ID   5S_DM       repbase;    DNA;    INV; 135 BP.
XX
AC   X01082;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster 5S DNA sequence.
XX
KW   5S_DM; DM5S; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-135
RA   Sharp S., Garcia A., Cooley L. and Soell G.D.;
RT   "Transcriptionally active and inactive gene repeats within the D.
RT   melanogaster 5S RNA gene cluster.";
RL   Nucleic Acids Res 12, 7617-7632 (1984).
XX
DR   GenBank; X01082; Positions      98     232.
XX
SQ   Sequence 135 BP; 29 A; 38 C; 36 G; 32 T; 0 other;
     gccaacgacc ataccacgct gaatacatcg gttctcgtcc gatcaccgaa attaagcagc        60
     gtcgggcgcg gttagtactt agatggggga ccgcttggga acaccgcgtg ttgttggcct       120
     cgtccacaac ttttt                                                        135
//
ID   AACOPIA1_I  repbase;    DNA;    INV; 4110 BP.
XX
AC   AF134899;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   AACOPIA1_I is an internal portion of AACOPIA1, a copia-like LTR
DE   retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; AACOPIA1;
KW   AACOPIA1_I; AACOPIA1_LTR; MOSCOPIA; endogenous retrovirus;
KW   internal portion.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4110
RA   Tu Z. and Hill J.J.;
RT   "MosquI, a novel family of mosquito retrotransposons distantly
RT   related to the Drosophila I factors, may consist of elements of
RT   more than one origin.";
RL   Mol. Biol. Evol 16(12), 1675-1686 (1999).
XX
RN   [2]
RP   3916-4110
RA   Tu Z.;
RT   "Mosqcopia, a novel family of LTR retrotransposons in Aedes
RT   aegypti are associated with genes and other transposable
RT   elements.";
RL   Unpublished.
XX
RN   [3]
RP   1-4110
RA   Tu Z. and Hill J.J.;
RT   "AACOPIA1_I.";
RL   Direct Submission to Genbank (16-MAR-1999)Department of
RL   Entomology, The University of Arizona, Forbes 410, Tucson, AZ
RL   85721, USA.
XX
DR   GenBank; AF134899; Positions    4186    8295.
XX
SQ   Sequence 4110 BP; 1108 A; 893 C; 1189 G; 920 T; 0 other;
     ggtgatgggc ccagcgcaag gcccccgcgg gatttgtgaa agtgaagaaa agttttggcc        60
     ggccgagctg agccgccatt gctggtgttc cgctttggaa gcgaagagtg gaaaagaaca       120
     tcgcgaaggc cccatcgtgc gggtgtgtta gtgagtttac cggccgagtg agaaaaagtg       180
     cacgagtgca aaaatggccg acgcgaaatt ttcgatcccg aaacttaacg ggacgaattg       240
     ggcaacgtgg aagttgcgag tggaaaactt gttggcccgt gacgatttat gggatgttgt       300
     ggtcgaggaa gttcccgacg agtttgaccg tgacgatgac tggaaaatcg cgaatcgcaa       360
     ggcgaaggcg acgctggtgt tactgttgga agacagtcag ctcgccatag tgaagaagtg       420
     tgtgttcgct cacgatgtgt ttggtgcgtt aaaggcgtac cacgagaaga gtacccgttc       480
     ggtgcgcgtg tccttgctca aaaagttatg tgcgatcaat ctttcggagc gcggtgactt       540
     agaacaacat ctgttcgaag ttgacgattt gtttgaccgt ctcgacgccg cgggcacaac       600
     tctggacgca gatacgaaaa tctgtttgtt gttgaggagt ctcccaccct cctttgacgg       660
     gctagtcaca gctcttgatt cgcggtcaca agatgacatt acgctcgaag tggttaagtc       720
     caaattgatg gacgaattcc agcgccggct ggaacgcgac ggtcatccgg tgaagaaaga       780
     aaaggcaatg aaaactgccg taacgaagac gggtgaaacg cgtgtgtgct tttattgcaa       840
     gaagccaggg cacttgcaac gcaactgccg caaacttctc gagacgaaga aagaagaaaa       900
     caacagctcg tcgtccggca cgaagccgaa gaaaagtgac agtgtaaaag cgaaagccgt       960
     acacagtgat acgagaggaa ttgctttcgt tgtgaatggt gaaaatgctc gatcctggat      1020
     tattgacagt ggtgccagtg cgcacatgac gtgcgataaa tcgtttttca ccacattcga      1080
     agaatcttgc ggagggtaca ttaccctcgc tgacggtaag aaaacgcaga ttctcggtga      1140
     gggtgccggt gtgctccatg gcatagatgg tgacgatgaa gtgatcagga tcgacataag      1200
     tggtgtaaag tacgtcccgg gactgtcgac gaacctaatt tccgttgaga aactagctca      1260
     gaagaagctt gatgtgagtt ttaatagtga tggttgccgt attatcgatc cgaaggggaa      1320
     cgtcgttgca acaggagttc gttgcggcgg cctgtatcat ttgcggcagg cagagtcttc      1380
     gctgcaagct gcaggtgggc aacatcacga gaactgccaa cacttgtggc accgtcgcct      1440
     cggccaccgc gattgggcgg ctacggaacg catcaacaaa gaggagttag caacgggaat      1500
     gaaggtaggt gattgcggtc ttagacttgt atgtgagtgc tgccttgaag gcaaagcggc      1560
     tagagctccg tttccgagca ttgtcgaaag gaagtcgacc aggattctcg atatcatcca      1620
     cactgatctc tgtgggccca tgaaaaccac cacgccgagt gggaatagat tcgtcatgca      1680
     cctcattgac gattacagtc gtttcacagt aacttacctg ttgaaacaca agtcggaggc      1740
     ggcccaaaat attatcgact ttgtgaagtg gaccgagaat ctttttggtc ggaagccctc      1800
     tgtaatccga tctgacggtg gaggggagtt tgataataag cttttgcggg atttctatcg      1860
     tgctaacgga ataaagccac agttcacgac accctatact cctcaatcca acggtgtagc      1920
     ggagaggaaa aacaggtcca tcaccgaaat ggcaacctgt atgcttttgg actctggact      1980
     taataagcgc ttctggggcg aagctgtttt gaccgctacg tacatacaaa accgtatacc      2040
     gtctagatca gtacctaaga ctccatttga gatgtggtgg ggacgaaagc cggaccttgg      2100
     ccacctaagg gtgttcggca gtccagcgta cgttcatgtc cccgacgtga aacgcagcaa      2160
     gatggatccg aaagcgaagc ggctcatttt cgttggttac tcaattgagc ataaaggtta      2220
     taggtttgtg gacactgaga ctgattgcat caccatcagc agggacgccc gtttcattga      2280
     gcaagagaat ggaacgtcgt ccgttgagat tccagcttcg gagaacggga caagtaagaa      2340
     gcaagcgaat ggtgagatca atccgaatcc gttcaaggag gagaccgaca ccgaggagat      2400
     tagtgaagaa gaagagttta gcaccccacg tgctgaatca agtggagcct cgggtccagt      2460
     ccgtagatcg gcacgggaga accgaacaat tccgaaacat ctagaggact atctgttgga      2520
     gtacgccgta ggaatagcgg catgcgcggt tgaagaaccg gataatcatc tggaagctct      2580
     cgaaagtgcg gagtggcgca ctgcgatgaa ggacgagatg gactcgcatc agcggaacgg      2640
     tacatgggag ctaatacatc tgccgccagg acggaaaccc gtcggttcca aatggatttt      2700
     taaagtcaag cggaaccagg aagaacaagt agtgaagttc aaggcaaggg tcgtagcaca      2760
     aggatacagt cagaaggatg gcatagactt tgaccaagtt tttgcaccag tcacccggca      2820
     agctacactt cgtctgttcc tcactatcgc cgccaagcag aagctcatcg ttcagcacct      2880
     ggatattagg actgcatacc tcaacggtgt gctcgaggag gaggtttata tgcggcagcc      2940
     tcccggtttt acagtcaagg gtaaggagga gtacgtctgc cggcttagga ggagcattta      3000
     tgggctccgt cagtcagccc gctgctggca taagaaactg aatgaagttc tcaccaagta      3060
     tggattcaag tcatcggcgg ccgaccagtg cctgtatacg aagaatacgg atggagtgaa      3120
     agtgtttttg atagtccacg ttgatgacat tctagtggcg tcagcagaag aagcgaatgt      3180
     gaagagggaa ttcgaaaacc taggccgaga gttcgagttg acatgtctgg gcgaaatccg      3240
     tcattttttg ggagtggaag tcttacgtga agatggcgtg ttcaagatca ggctgaagca      3300
     gtttatcgat aagctgatta tcaagcacgg aatggagaat gcgaaaacta cgagatcacc      3360
     aatggacatc ggttttttga aagacggcgc aaacagtgaa ccgtttgagg acgttaccct      3420
     gtatcgaagc ttagtcggag gaatgctgta cttgtcagtg gttgcgagac cggatattgc      3480
     agccagtaca gcgatattgg gaaggaagtt ttcggagcca agtcaagccg attggaccgc      3540
     tgcaaagcga ttactacgct acctgaaagc aactcgtcac tattttcttc gattgggcgg      3600
     tgctgcagaa gatccactgg ttggatacag tgatgccgat tgggcaggtg atcccgtcag      3660
     ccggcgatca acatcgggat tcgtgttctt gttcgctggt ggtacagttt cgtgggctag      3720
     tcgccgccaa acttgcgtaa cgctctcttc catggaagca gagtatgtcg cgctagccga      3780
     agcgtgccaa gagaccatct ggttgaggca gcttcttcgc gacttcggag agcctcagtt      3840
     acagccaact acgatgaaag aagacaacca gggctgtatt gccttcatta aaacggagag      3900
     gtcaagcaag cgatccaagc acattaacac caaggaacgt tttgtgcaag aactgtgtga      3960
     gaagaacgaa attgtgctcg agtattgtcc tacggagata atgatagctg atgtaatgac      4020
     aaaaccgttg ggaccacaga aacatggaga tttcgtcgtg aaactgggac tggaggatcc      4080
     gcagtgaagc aggtaaccgc tgaggaggag                                       4110
//
ID   AACOPIA1_LTR repbase;    DNA;    INV; 270 BP.
XX
AC   AF134899;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   AACOPIA1_LTR is a long terminal repeat from AACOPIA1, a
DE   copia-like LTR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; AACOPIA1;
KW   AACOPIA1_I; AACOPIA1_LTR; MOSCOPIA; endogenous retrovirus.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-270
RA   Tu Z. and Hill J.J.;
RT   "MosquI, a novel family of mosquito retrotransposons distantly
RT   related to the Drosophila I factors, may consist of elements of
RT   more than one origin.";
RL   Mol. Biol. Evol 16(12), 1675-1686 (1999).
XX
RN   [2]
RP   1-270
RA   Tu Z.;
RT   "Mosqcopia, a novel family of LTR retrotransposons in Aedes
RT   aegypti are associated with genes and other transposable
RT   elements.";
RL   Unpublished.
XX
RN   [3]
RP   1-270
RA   Tu Z. and Hill J.J.;
RT   "AACOPIA1_LTR.";
RL   Direct Submission to Genbank (16-MAR-1999)Department of
RL   Entomology, The University of Arizona, Forbes 410, Tucson, AZ
RL   85721, USA.
XX
DR   GenBank; AF134899; Positions    3916    4185.
XX
SQ   Sequence 270 BP; 63 A; 72 C; 49 G; 86 T; 0 other;
     tgtggagaat gcatcggtgt accccttcac tactgcacga atacccattc ccaccattct        60
     ggcaaccgtg cactctttcg tgtacgacag ctaggagaag agaaaaaaat gttttttttc       120
     agttcaaatc taacactcgc cgcgtgcata caaactttgt atttctttgc ttaataaaac       180
     catcgttaaa gttatttccg cgtgtgttct cgttattccg ctggttctcc cgaatccccc       240
     gatccgctgt gttgcctgtt tctgctaaca                                        270
//
ID   Aara5_AA    repbase;    DNA;    INV; 652 BP.
XX
AC   AJ006564;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Anopheles arabiensis Aara5 pao-like retrotransposon.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Aara5_AA;
KW   pao-like retrotransposon; reverse transcriptase.
XX
OS   Anopheles arabiensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Cook M.J., Martin J., Lewin A., Sinden E.R. and Tristem M.;
RT   "Systematic screening of Anopheles mosquito genomes yields
RT   evidence for a major clade of Pao-like retrotransposons.";
RL   Insect Mol. Biol 9(1), 109-117 (2000).
XX
DR   Genbank; AJ006564; Positions       1     652.
XX
SQ   Sequence 652 BP; 179 A; 161 C; 174 G; 138 T; 0 other;
     gagaaaccaa gctcaagggc ggccgctacg aaactggact cttatggcgt tatgatgatc        60
     ccgacctacc ctgtaacaag gctgcggcga tgaaacggta tgtatgccta aaacaaaaat       120
     taagtaaaga tcccgttcta gctgaagccg tgcaggccaa gatggaggag tacttagcta       180
     aaggctacat cagaaagctc gctgacaccg tttcgatcgc gcgccagaag aacgatggta       240
     cctccccata tttccggtaa ccaaccccaa caagccgggg aaaattcgca tggtcttcga       300
     tgcagcggct aaggtaggcg gggtaagcct gaactctcgt ctgcttcccg gtccggatat       360
     gcttgccgga ctgttagcgg tgctgctgaa attcagagag aatcgtgtag ctattgctgg       420
     agatatacga gagatgttcc atcaagtggc catcaaagaa acggatcaac ggagtcagat       480
     gatcctttgg gacagtggac gtcccggcac cggaccggca acttacgtcg tgaccgtaat       540
     gactttcggc gcagcgtgct cccccagtag cgctcaatat gttaagaact tgaacgcgga       600
     caggttttca gatgcatttc caagagcagc agaatgcatt aagcatgaac at               652
//
ID   AARA8_AG    repbase;    DNA;    INV; 4188 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Mosquito I clade non-LTR retrotransposon, partial sequence - a
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; AARA8_AG.
XX
NM   AARA8_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Cook M.J., Martin J., Lewin A., Sinden E.R. and Tristem M.;
RT   "Systematic screening of Anopheles mosquito genomes yields
RT   evidence for a major clade of Pao-like retrotransposons.";
RL   Insect Mol.Biol 9(1), 109-117 (2000).
XX
RN   [2]
RP   1-4188
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [3]
RP   1-4188
RA   Gentles A. and Jurka J.;
RT   "Anopheles putative non-LTR retrotransposon.";
RL   Direct Submission to Repbase Update (30-NOV-2004).
XX
DR   [3] (Consensus)
XX
CC   This sequence is ~98% identical to Ag-I-3 in [2].
XX
SQ   Sequence 4188 BP; 1371 A; 1046 C; 677 G; 1090 T; 4 other;
     ttcactgtaa actgtcgcct acctgcacta actgtggtac ccctgcgcat ggagagtgac        60
     cgtagatccc gtgtgcataa ctgcaaggac aaccacagca ccacgtctcg tacctgtccc       120
     cctacctcca agaagaacag gtcatcaata aagatcgaca acaactgttc ttacggtgag       180
     gcacgtaaag ctctgcttaa tgttaccaat ccacaaattc tagtcccatt caaaaccgca       240
     tcacatacgc acaacagaca cacacataga tgaaaaagac acccaaatta agaactcaaa       300
     aaaagaatga atctctagaa aaaatgataa ttttgcttac acaaacagta actaatctaa       360
     caacaaaaat cgaagatcag gataaaacta tgaaaagaat gtgcaagaat tttgaaaaga       420
     gtttagaaaa aaagaaaata gaatctcaaa tggaaattga agaggatgaa agtgaagaag       480
     aattagacga ttttagcacg gaagaaagca cggaagaaag cactgaagaa gaaactgaag       540
     aagataatga agacaaaaaa gtagaaaaag taaaacatgt aaaacaaaat gagtagagaa       600
     caaaataaca ccactaacaa acggaaacgt tccaccaaaa gacaccccct cctcggaaga       660
     ggaatcccaa ccccgaaaaa tcatccccat ctctctcatc ccaatccccc aaccctccca       720
     catccaatct tctctctgtc gcctctaaaa aaactctaga tctaacacga aatctgtaga       780
     ttaatttata atttcaatat taacaatatc cttctgatta taagcattaa cttttatcca       840
     tttttccttt actacataat tcaattcatc atatcaatct aataactatt catccatatt       900
     tgcattatcc tggaatatca gaagcatgaa ccaaaatata gaagaactaa aactactaat       960
     caatagacac gatccaacaa taatcaccct tcaagaagta atgcagttcc ctctctcctt      1020
     agctctcctc ttaatagata caattggtac actaacatac acccaaccat acctcatcat      1080
     agtgtagctg taggcatttt aaaacacata tcttcccgca gtagctgtag aaatttctct      1140
     cccgtgcaat gctccatagt atgtttaatc tttctcattc aatcaaccct tttacaataa      1200
     tttcgattca ctagtacttt cagcaaatta ataataattt aattgtttta ggggatttta      1260
     atgcccaaca taccacctgg ggtgctcgac ctcatgtaac agagggaaca gcattgcttg      1320
     tgtttttgaa acaattggtc tggaagtaat ttcaaaccaa tccgctcacg tatttctccc      1380
     ataaacggca aaggctccat acttgactac tgcgctgtgt catcttctat ggcacagcag      1440
     ttcacagtta cagtttctaa tgacactctg gtagtgatca ttttccactt ttaatccaca      1500
     gtagtttaaa tccccagcgg ccacttctcc gccccaggtg gaaatatgag gaggccaatt      1560
     gggcagcata tcaaagagaa ataatgttca atcttccact tgatgaaaat ccccctcttc      1620
     tcgctttact gcatgcattg aatacgccgc ttctcggagt attccccgta caactggaaa      1680
     acctggaaaa agatgtgaac catggtggaa cgcaacagtt gctgcagcta ttaaagctcg      1740
     cagagctgct ttgcgcaaat tccgccgagc tagcaaaaat ccggataatt ttttcacacc      1800
     catttttgct gaggaatatc gtacagccaa tcgacttgcc aaggaagcag ttcgtcttgc      1860
     caaaaagaat aactgggata atttcattaa tgaaattaat cctcagttat ctagcaagga      1920
     agtgtggagg cgagtcggtt gtttgaatgg taaaaatcaa caaagctcca caatagttct      1980
     caaaacccag gacactatca ttgcccctgc tgaagtacct gaagcctttg ccatccactt      2040
     ttctgatgtt tctgccacac acaattatcc gagtaatttt caaacccata aacttaacac      2100
     tgaatctgtt ccaatttctt tccctgatgc cactgaacat agatacaata gtcttttcac      2160
     aataactgaa ctccattggg cactaaggaa atgtaaaggt agatctgctg gtcccgataa      2220
     cataggatat cccttactgc aaaacctcct gtagaatcta aatccaccct tcttaacatt      2280
     tacaatagta tttggtcttc yggtaatatt cctaatgatt ggaaaagtag tttaactatc      2340
     cccataccca aacctaacaa acctaacmac aacgttgata gctaccgtcc aatctccctc      2400
     cttagctgca tgggtaaagt tttagaacgc atggttaatc gccgcctctc gcaagaatta      2460
     gaagacagaa acctgcttag ctctgaccaa cacgcttttc ggagcgggtt gggcacggaa      2520
     acatattttg ccaaattaga tgatactatt caaaaatcaa tagaccagga tcatcacata      2580
     gactttgcca tcatagatat ttccaaagct tttgatcgca cttggcgcca ttccattctt      2640
     tctcaactag ctttttgggg ctttggtggc cggctcacta atttcataga caattttttt      2700
     acagacagat catttagagt cctaatcggt aatagtgttt ctaatccata tcctctagaa      2760
     aacggtgtcc ctcagggcgc catcctttct cctacacttt tccttatcag tatagaatct      2820
     ctgttttgct ccattccata tgaaatcaaa ccttttgtct atgccgatga tatcattctg      2880
     gtctcttcat cgagatctgt tagcacgtct cgtcagcttc tccaaaaagg agttgacaag      2940
     ataaggcaat ggtctcggtg gacaggtcat gaaatatccc attccaaatc tcaaatcctc      3000
     catatctgca aaatgggctt tcatcgcaaa ctaccaatca aacttcacga ccacatcata      3060
     ccaaatgtaa actcagcgaa aatattaggt gttacatttg acacaaaact tactttcatt      3120
     ccccactcca accggataag aaaagaagca aaaaccagac tgaacctctt taggatgtta      3180
     ggagctggac aacatcgtgc atcacgtcaa acacttctgc agatcctcaa tagctggctg      3240
     cttcccaaaa ttctctaygg tattgagatt gtctctcgcc aacgagaaaa ctttgagaag      3300
     cgtattgctc ccacatacca tacagccatc cgcctttcaa ctggagcctt ctgtaccagt      3360
     ccaatccact ctctactttg tgagagcgga cttcttcctt ttgattacat tatcaccaac      3420
     agattaacag cagcagcagg acgcatccta gagaaggaca tcaaagccga atcatttatc      3480
     aacagagtca atgcacaatt tcataccctt accaacaacc agcttcccca tatcagcaag      3540
     cttaccggac gcggaggacg cccttggtat cgtcaaccgc ctacaataga ctggtcttta      3600
     aaagataaac tacgtgcagg aaattgcagc catatcgccg gccatcattt taccagtctc      3660
     atccaaagca aataccagaa tcaccatcat atctttaccg acggctctgt cctcaatgaa      3720
     tccgccggtt tcggtatttt ctcctccaac aacagttgtg ccatcaaact accagaccat      3780
     acctctatat tctcagctga agcaatagcc atgatagtcg ccgcgcaaga aggtatttgc      3840
     cttaataaac caaatattat tttcaccgac agtgccagtg ttctagccgc cctagaacac      3900
     ggtaacatcc gagatccgca catcyaacta ttagatcaac tagataactc cccggttata      3960
     acattctgct ggatacctgg tcactcgggt atcagcggaa acgagaaagc tgaccaactt      4020
     gcaaaccagg gtcggctccg tcctccagaa aacaacacaa ccatagcccg cagagacttc      4080
     aacaaatgga gcaaaacaat agttgacgaa aaatggaacc tcacctggca ccggaaacaa      4140
     aattctttct tcgaaccatc aaaccatcac aacagcctgg aaagacac                   4188
//
ID   Academ-10_LMi repbase;    DNA;    INV; 3718 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3718
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2951-2951 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(596..919,1085..1558,1542..1736,1715..1981,
FT                 1960..2148,2094..2336,2429..2785)
FT                 /product="Academ-10_LMi_1p"
FT                 /translation="MAVQNHIFAFLRKTVGFMRKLLPYKIKDDKIVYKKGP
FT                 IHFLHRINGFLTTDLYSHVKKQRLAAFCKSIRTVSTKTKMFLYVKFQYLRV
FT                 YSVLLRDAPLIFPLCLFCRNRDYLYSSDKGLRTSINASVRRGDGKREALNR
FT                 SLSVKLHVHCRKDYTRESSIKKRERQPSVSTSNTYLLFSPTKGILRSAEEL
FT                 AIKDKCSFCLDEINEEXFQKENKKPVQRRQKLTKVETVTCKDSIIAAAQKR
FT                 NDEWGKSVKKRLDNITDLVAADGVPLQMECHESCFVEFFREPTGGNKRPGR
FT                 PPDLEVGEVMQRIFNIIENSNECQFAVTDLIEHAGGWNWTRWWLELVVSET
FT                 MIIPISQDKFLGNNANKMQLISLLSKKIEQDGIKVRQAKDDADTLIVQTAI
FT                 EIISSNPTDQVVVVGEYVDLLVLLWHLIGFIVALTSPQKDIIFLKPGKENK
FT                 AQTLYPSQELXGNEDLQDHKLYCSFMPSADLTPHRQYSIILFLHAFSGSDT
FT                 TSSVFMKGKEKXMEILKKCKYLISAASVFKVPSASHNAIFEADCKWFMALY
FT                 RASVNEMSLXTLRHTVSVQLWMGVAKSPEEWGWRKSVNTLPPVTTLLPPAP
FT                 HCLLKLISCKCVKGCGSTCSCRKAAPQCSKICNFCRGVSCLNKCFTPSLQE
FT                 EDSETPTAEGSGVTSDQDPDDQGGCNSESGDDDC"
XX
SQ   Sequence 3718 BP; 1218 A; 666 C; 735 G; 1092 T; 7 other;
     tagtctaaga tccggcataa gaaatatata ccctcatctg ttatttaatt ttgatcaagt        60
     atatatggta gacaatgtgt agattgatat atcgctaata ggttgcctag ctaaatctgg       120
     tgccgatgat gttaaacaat aaatgtttca ttaaattttt tcgatcaact tcccccatct       180
     gttatttatg aaagtcaagc ttcagctgag agaatatacc ccaatgaact gaaaaaataa       240
     aggttgccta ctgtcacatg ttgccaacta tagggttgcc tagtatgaag aggtaagtaa       300
     gcgtagttaa tataccctca tatgttattt aatcgaatta catttcaaat gaaaggttat       360
     tttattccaa atccaactgt aataggttgc cttatcaaaa agtttgctaa atccatggtt       420
     gcctagattt aagatgttaa ctttttagtc cagtcaaatt aggctcaatt ttgacgttta       480
     gaggaaaaaa ttacgaataa gctggatttt tgcacagatg ttccttgtac ctttgtaaac       540
     aacatactaa aagtccccac cgattgggtt ggagcttcgt ccgccatatt gaaaaatggc       600
     ggtacagaat cacattttcg catttttaag gaaaacggtt ggatttatga gaaaattact       660
     tccgtacaaa attaaagacg acaaaattgt ctacaaaaaa ggtcccatac actttcttca       720
     taggattaac ggttttctca caactgacct gtattcacac gttaagaaac agcgcctcgc       780
     tgcattttgc aaatctattc gtacggtatc cacaaaaact aaaatgtttt tgtatgtcaa       840
     atttcaatat ttacgtgtat atagtgtctt gttgagagat gcaccattaa tttttcctct       900
     atgtctattt tgcaggaatt aaacgcagag tgatgatgag ctaagacatc atgacgattt       960
     taatgcactt tctaggtgct tcagtactga tcttttactg tgaaaatggt tgtgggtgaa      1020
     aaataacaat atttgaaatg gagaatcacg aaaagtgttt gatttgtgat ggactacttt      1080
     ctgaagggac tacttgtaca gttcagataa aggccttcgt acatcgataa atgccagtgt      1140
     gagacgtggt gatggaaaac gtgaagctct taatagatcg ttgagtgtga aactccacgt      1200
     acattgccgg aaagattata caagagagag tagtataaag aagcgtgaga gacaaccttc      1260
     cgttagtacg agcaacacat atctactctt ttcaccaacc aagggtatat tgagatctgc      1320
     tgaagaatta gctattaaag acaaatgttc gttttgcctg gatgaaataa acgaggaaam      1380
     atttcaaaag gagaacaaga aaccagtaca aagacgacag aaattaacaa aagtagaaac      1440
     tgtaacatgt aaagattcaa taattgcagc agctcaaaag aggaacgatg agtggggtaa      1500
     aagtgttaag aaacgtcttg ataacatcac tgacctagta gctgcagatg gagtgccatg      1560
     agagctgttt tgttgaattt tttagggaac caactggtgg aaacaaacgg ccaggtcgcc      1620
     ctcctgattt ggaagtaggc gaggtgatgc agagaatctt caatataatc gaaaacagta      1680
     atgagtgtca gtttgcagtt acagacttaa ttgaacacgc tggtggctgg aactggtagt      1740
     cagtgaaact atgatcatcc caattagtca ggacaagttc ttaggaaata atgcaaacaa      1800
     aatgcaactc atatccctgc tatctaaaaa aattgaacag gatgggatca aagtgagaca      1860
     agctaaggat gatgccgata ctttaatagt tcagacagca attgagataa taagttccaa      1920
     cccaactgat caagttgtag ttgtaggaga gtatgttgac ttattggttt tattgtggca      1980
     ttaacttcgc ctcagaaaga tattatcttc cttaaaccag gaaaagaaaa caaggcacaa      2040
     acattatacc catcacagga actgmaagga aatgaggacc tccaagacca taaattatat      2100
     tgttccttca tgccttcagc ggatctgaca ccacatcgtc agtattcatg aaaggaaaag      2160
     agaaaatsat ggaaatactg aagaaatgca aatatttaat atctgctgcg tcagtgttca      2220
     aggttcccag tgcatcacat aacgccatat ttgaggccga ctgtaaatgg tttatggctc      2280
     tgtatagggc ttctgtcaac gaaatgtctc ttaamacgtt gcgtcacacc gtttcgtagc      2340
     ctcagcgacc agaaataaag tgaacctctc atcacttccg ccaacggagg aggccgctag      2400
     gcaacactcc tacagagtgt accattaggt gcagttgtgg atgggtgttg caaagtcccc      2460
     tgaggagtgg gggtggagaa aatctgtcaa cacgttacct ccagtcacta ctctacttcc      2520
     acccgcccca cactgcctgc tgaaactgat aagctgcaaa tgtgtaaaag gatgtggatc      2580
     tacctgtagt tgtaggaagg ctgccccgca gtgctccaaa atatgcaact tctgtcgagg      2640
     tgtctcttgc ctcaacaaat gcttcacacc ttcacttcaa gaagaagata gtgaaacacc      2700
     tactgctgaa ggaagcggtg taacatcaga ccaggatcca gacgatcaag gaggttgcaa      2760
     tagtgagtca ggggacgatg actgctaaga gtgctgtgaa tatatgtata tatttatgta      2820
     tgtaatattg tgtaatatat gtttacttca tcaataaatg ttaaataaaa ttctgtgtgt      2880
     catatcatac tttttctgaa gctatttcac tgacacctgc agtcagaaat ggaattcgca      2940
     ttattatacg gtcagtatag acaaataagc atcgttttga aggtgaaccg ttaatcctat      3000
     gagaaaagta cataggacct tttttgtaga taatgttttc ctctttaatt tcgtactgaa      3060
     gcaattttct cataaatcca accgttttcc ttaaaaatgc gaaaatgtga ttcttgccgc      3120
     cattttccaa tatggcggat gaagctccag cccaatcggt ggggactttt agtatgttgt      3180
     ttacaaaggc ataaggatca tctgtgcaaa aatccagctt actcgtaatt ttttcctcta      3240
     aacgtcaaaa ttgagcctaa tttgactgga cwaaaagtta acatcttaaa tctaggcaac      3300
     catggattta gcaaackttt tgataaggca acctattaca gttggatttg gaataaaata      3360
     acctttcatt tgaaatgtaa ttcgattaaa taacatatga gggtatatta actacgctta      3420
     cttacctctt catactaggc aaccctatag wtggcaacag gtgacagtag gcaaccttta      3480
     ttttttcagt tcattggggt atattctctc agctgaagct tgactttcat aaataacaga      3540
     tgggggaagt tgatcgaaaa aatttaatga aacattttat tgtttaacat catcggcacc      3600
     agatttagct aggcaaccta ttagcgatat atcaatctat acattatcta ccatatatac      3660
     gtcattaaaa ttaaataaca gatgagggta tatatttctt ataccggatc tcggacta        3718
//
ID   Academ-11_LMi repbase;    DNA;    INV; 3805 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 19.11, Created)
DT   23-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3805
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2952-2952 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(723..1199,1031..1831,2079..2372,2426..2809)
FT                 /product="Academ-11_LMi_1p"
FT                 /translation="MAGSGLKELLASIYAENSVDKILNGXAYSRAVRAHML
FT                 TNLALAYLIFNDVQLTEIERAETERLLSDNDRSLLLSARVNRTVQIVSSKF
FT                 KNALENLEREGPTSKLWVQYYRMTVLMKRFIQAERMGDWELHLDTISKMLP
FT                 FFHSAGHFFTLKVLVYIYRTTLGAVLSNDCTYEEIHSGREDGGLGATLGYN
FT                 KQNAPFLSLSGPFFYAKSARLYLQDMSNLQHRMVPEEFTVFTRGDFTIRRS
FT                 DKFWSGLWTDLTIEQVLMRSMKSQGGLTHGRGISSSVLSRWTGGMVYMLNL
FT                 CEELERFWDISSVTSEQHIDMRPAQMIRDTADLEKLNNWFSIHPPFPSTDK
FT                 ILSISNGIVGGAEINCHLAQEKGIEGVKKITGSSFGKVTFKRKDKVVTLSQ
FT                 SRTPLKYTRSVSTLIHSPFFKGCVSQKSRTVNNVEWCLMDILKMEPSGVLK
FT                 RERLHRCTALSCNEIVFDSSTIMKMPQEKVLANDSNKRRLIHQLCSAFELE
FT                 GIETKRATEDADRDIVCTALDKSAPTRTNCPPPPSPGFELFLHAFSGCDTT
FT                 SSLFWQGKTKLWSVLQRNKYLIDLAAVFLLPDTSHETIAXVERSALSLCME
FT                 GTHPSTPYMVFDSACSSSQQPMRRWTWDICPRPKKLLPSIPTVHITKCKXG
FT                 WEW"
XX
SQ   Sequence 3805 BP; 1150 A; 774 C; 797 G; 1073 T; 11 other;
     taggccagtc aaatcgtaca aaaaaagggg ctaaaaacgc aaatctggcg ccccccctaa        60
     aaacgcaaat cgtgatgtag ttctaatttt ttgatatgtt gttaggacct gttagagtag       120
     tatgaaacca agtttgcagc ttcgaaaacc ctgtgcttcc caagttataa gtgaaaaact       180
     ccgaaatttt cggacttttt ttagattttg ccttctaacg cataaactat gagttttacg       240
     atgttagtag tttttaccat ttccaaagta catagaatat gtaacaattt aagcctaacc       300
     gcagcgttat acgtccaata gttttctaga tatgaagcgt caaaaatggg cttattttta       360
     ccaaaaatga aaattttaag ttttgctctg atttcgagct gaatattggc ataaccgctc       420
     atcctgcgag aatagacatg agaattgaag ttgtagtaaa ttttattagc tttaaaataa       480
     gcacaagatg aactctctag agcgagtagt tctcttcaaa ttgtacaaaa acggaaagtc       540
     aggaaactga aatttttgaa gaaatgagcc taaacactaa tgacaaattg tgggcattca       600
     gcgaaaggtt cgattgtatg tttacatgaa actcgtgtat tataaaaatt ccaatttaag       660
     taccatggtg gtgagttagg tggtttccat ctacttttct ttagggagcc attggtgcca       720
     cgatggcagg tagtggcctt aaagaattgc tcgcttcaat atacgccgag aacagtgtcg       780
     acaaaattct caatgggsat gcatactcga gggctgtgag agctcatatg ttgacaaatc       840
     ttgcgttggc ttatttgatt tttaatgatg ttcagctaac tgagatagag cgagcagaaa       900
     ctgagagatt gttaagtgat aatgacaggt cacttctcct ttctgccaga gtgaatagaa       960
     ctgtccagat tgttagcagc aaattcaaaa atgcgttgga aaacctggaa agagaaggcc      1020
     ctacctctaa actctgggtg cagtattatc gaatgactgt acttatgaag agattcattc      1080
     aggcagagag gatgggggat tgggagctac acttggatac aataagcaaa atgctccctt      1140
     tctttcactc agcgggccat ttttttacgc taaaagtgct cgtctatatt tacaggacat      1200
     gagtaaccta caacaccgaa tggtcccaga ggaatttact gttttcacta gaggagactt      1260
     cacgattcgc agatctgata aattttggtc agggctgtgg acagatttaa ctatcgaaca      1320
     ggttctaatg agatcaatga agagccaggg aggattaact catggccgtg gtatatccag      1380
     cagtgtgctt tcgcggtgga caggaggaat ggtgtacatg ttaaacctct gcgaagagct      1440
     ggaacgkttt tgggacattt cttctgtaac atcagaacaa cacattgaca tgaggccagc      1500
     acagatgata cgagacactg ctgacttgga aaaacttaat aactggttca gtatccatcc      1560
     tccatttcca tctacagaca aaatactatc catcagcaac ggaatcgtgg gaggtgctga      1620
     aataaattgc cacctagctc aggaaaaagg cattgaaggg gtcaagaaaa taactggcag      1680
     ctcgtttggc aaggtaactt tcaaaagaaa agacaaagtg gtaactttgt cgcaatcacg      1740
     aactccatta aagtacacaa gaagcgtgtc gacgttaatc cactcaccat ttttcaaagg      1800
     atgtgtatca caaaaaagtc ggacagtgaa ctgaaagagc atttaagttc gaactggccc      1860
     cttatccact ggcattgttc aacgaagagg ggatgcgtaa gggagcgaag tcaacttttt      1920
     atgcgctttc gcaccacttt cacaaaacat ttctcttgga accaggacat ttgtagtggt      1980
     cgatggggat accttctcca caaggctatc tggcacagaa acgactcgtg aagcatagtt      2040
     gctacctaca ttacctacac tttaaacaac tttggtagaa cgtcgagtgg tgtttgatgg      2100
     atatcctgaa gatggagccc tcaggagtac taaaacgcga acgattgcac cgctgcactg      2160
     ccctttcttg caatgagatc gtatttgact cttcaactat tatgaaaatg ccccaggaga      2220
     aagtgttagc caacgactca aacaaaagac gtctcattca ccaactgtgc tctgcatttg      2280
     aactcgaggg cattgaaact aagagagcaa cagaagacgc agaccgcgac attgtctgta      2340
     ctgccctcga taaaagcgct cctacgagaa catgatcgtg gttggggagg atgtggactt      2400
     acttctttct gtcgaggaga aatagaattg cccccccccc ccctcccccg gatttgaact      2460
     cttcctacat gcatttagcg gatgtgacac cacttcctcc cttttctggc aaggaaaaac      2520
     aaaattgtgg agcgttcttc agaggaacaa gtacctgatt gacctggccg ccgtgtttct      2580
     cttgccagat actagtcatg aaactatagc tgawgtcgag agaagtgcct tatcgctctg      2640
     tatggagggg acacatcctt cgacacccta catggtcttc gattccgcct gttcatcaag      2700
     tcagcagcca atgcgaaggt ggacctggga catttgcccc cgaccaaaga agctgcttcc      2760
     ttccattcct accgtacata tcaccaagtg caaamatggt tgggagtggt gaaggatgcc      2820
     acacaktggg gttggtcaaa gacctccatt ggtctattgc cagtaacaac attatgtgaa      2880
     ccagccccac caaaacttct cagatcgctg tcatgtaagt gcaagaaggg atgcatggga      2940
     tcatgcaact gccagagagc tgggcttcag tgctcagctt tgtgcactca ctgctctggt      3000
     accacttgct acacgtcact atgagtctga tctacgagga tgaagacggt tacaatgatc      3060
     ttccaccttc gaacgaacag ccaggaatga tacagcacgg agcctcctta tgtcctagac      3120
     acgctgtgaa caaccaggac cttctaagaa atcaaaaaat gagattttca gttattgaaa      3180
     tttatgtttt ttattacaca attgcattta aatgatattc taaagacagt gtgtacattt      3240
     ttatttcttt gcatgcctgc aatttgtcat tagtgtttag gcwcattcct ttaaaawttt      3300
     ctgtttactg acttttcgtt tttgtagcat ttgaagagaa ctactcactc tagagagttc      3360
     atcttgtgct tattttaaag ctaataaaat ttactacaac ttcawttcta atgwcttttc      3420
     tcgcaggatg agcggttatg ccaatattca gctcgaaatc agagcaaaac ttaaaatttt      3480
     cattttggta aaaataakcc catttttgat gcttcatatc tagaaaacta ttggacgtat      3540
     aacgctgcgg ttaggcttaa attgttacat attcaatgta ctttggaaat ggtaataact      3600
     attaacatgt aaaactcata gtttatgmgt tagaaggcaa aatctaaaaa atgtccgaaa      3660
     atttcgagtt tttcacttat aacttggaaa gcacagggtt ttcgaagctg caaacttggt      3720
     ttcacactgc tctaactggt cctaacaaca tatcaaaaaa ttagaactac atcacgattt      3780
     gcattttcaa tgtctgactg gccta                                            3805
//
ID   Academ-12_LMi repbase;    DNA;    INV; 3501 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3501
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2953-2953 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1046..1078,1060..2427)
FT                 /product="Academ-12_LMi_1p"
FT                 /translation="MCMHNVSCGNVCLVRKCVICDKLLEDGTQRSVVREKG
FT                 LKSFIQASKKRQDGKFLIFKRNTEIEVHEKCRKNYVTGKSIAAYLKRAQEN
FT                 PESKPLRSIIPEFAFKTHCFLCGEEVPLDYAKIQIKKPPSKRNLVYPVRKL
FT                 AVRENVLTLARNLNNEYGRSIVRRVEPVTDLVAADAQYHFLCMRTLHQAPP
FT                 TLHGVGRPPGGEVEDAMQAIYCFLENNDEECQFTMEELMEQIECDSRPHQS
FT                 TIRRHLLQKYGDDILITTSKPYVLCFKATGHKIINESWYRDIQRLPEKEEK
FT                 RAIIEAAAAIIVEDIRSQVYNVTEYPASERFLEETEDVIPETLRVFMDAVV
FT                 LSKKRGDLEKWKKKSAAIAHCIISAVRPASFLSPLLLQLISCKCKTDCHGR
FT                 CGCRRAGLFCTKLCQQCEGLCSNIDDTLNTEDEEDLDEPLAAPLSEAAEVK
FT                 EGIKSCNILQHYASLLINFSLS"
XX
SQ   Sequence 3501 BP; 1068 A; 696 C; 723 G; 1014 T; 0 other;
     tagtccagtc aattggtgct caaaacagcc tgtttcgtaa caaaattccg aaagtttttt        60
     tctcaacggt tctgtatgtt tttgggggcg ctgaattcga atttcaagtt tgctgccttg       120
     taggaggtcg gcttcacaac gaaaaactca aaaaacctca aaattttcgc acttttttca       180
     gtttcttgct tatatctcga aaactatgcg tttctcgaag atgttcattc tgagcaaaat       240
     taaagtagac aaaatttcct acaaaatgca ctactcatgt ttgattttct gacgagcagt       300
     ataggcgcta gaactcaatg aaaaagagca aatttttggc ccttctgcga aaacgtcaaa       360
     aacgcacaat tgcacgccct acaactcgag aaatatacat gttatcaaca aaatccctac       420
     accacgtgaa agtacattaa atttcctaca agggacgtct ataatattcc attttctcgt       480
     aatgggggga agcaccaaaa agaaaattac gagcaatgct ttctgcgccc tatagtgtaa       540
     cgccccctcc cacctgccta tctctcgccg gcgctatatt ttcgatgtgt tgcactgaaa       600
     agtgatgttt tgaatggatt aaagagaaag tatgtttaaa aaaatcatca aattatattt       660
     agaacatttt agttacatga cactgagcag aaaactgaat atgaaatcag catgtgttat       720
     gaaatgagtg agtgtcgagc ccaggattgg gttatcaaat gttgtaacaa aacctcctac       780
     accacgtgaa aatacattaa atgtccatca gctgagtcaa agtggtcgaa ccctgtcccc       840
     accccctaac gggacggtcc ttccattcct ttgttggcca catccctgct aataggttcc       900
     ccctccagac actttcgagc gtctagcagc ccatctgatc ttatcttgcg gtagtttagt       960
     caggtcagag ttgccaacgt gttgtggtcg aatctttaaa gctgcaatat ttttttttta      1020
     cttttctgtg tcaagttttt attgtatgtg catgcataat gtctcgtgcg gaaatgtgta      1080
     atttgtgaca aactgttaga agatgggaca cagaggagtg ttgtgagaga aaaaggtttg      1140
     aaatctttca ttcaagccag taagaagaga caggatggta agtttctaat atttaagagg      1200
     aacactgaaa ttgaggttca tgaaaaatgc aggaagaatt acgtgacagg aaagtctatt      1260
     gctgcttatt taaagagggc tcaagaaaat cctgaatcaa aaccgttacg ttcaattata      1320
     cctgagtttg cctttaaaac tcactgtttc ttatgtggag aggaggtgcc tctggactac      1380
     gccaagatac aaataaaaaa gcccccctca aaacgtaatt tggtataccc tgtgaggaaa      1440
     ttagccgtta gagaaaatgt gctcacactg gcgagaaact taaataatga atatgggcgc      1500
     agtatagtac gacgtgtaga gccagttact gatttggtag cagctgatgc gcagtaccat      1560
     ttcctgtgca tgagaactct acaccaggct ccaccgactc ttcatggagt tggcagaccc      1620
     cctggaggtg aggtggaaga tgctatgcaa gcaatttact gttttctaga aaacaacgac      1680
     gaggaatgtc aattcaccat ggaagaattg atggagcaga ttgaatgtga ttcccgtcca      1740
     catcagagca ctatcagaag acacctgctt cagaagtatg gcgacgacat tttaattaca      1800
     acaagcaaac cttacgtttt atgtttcaaa gccactggac acaaaatcat taatgaatcc      1860
     tggtatcgag atattcagag gctaccagag aaagaagaaa agcgtgccat aattgaagca      1920
     gctgctgcca taattgtgga agacataaga tcgcaagtat acaatgtgac tgaatacccc      1980
     gcttcagaaa ggtttctaga ggaaactgag gatgtcattc ctgagactct tcgagttttc      2040
     atggacgctg tggtgctgag caaaaagcga ggggatctag agaaatggaa gaaaaaatca      2100
     gcagccattg cacattgtat aattagtgct gtgcgacctg cgtcattcct ctcacctctt      2160
     cttctgcaac ttatatcttg caaatgcaag acggattgcc atggtcggtg tgggtgcagg      2220
     cgagcaggac ttttctgcac gaaactgtgc cagcaatgtg aaggattgtg ctcgaacatt      2280
     gacgacactt tgaatacaga agacgaagag gacttggacg agccacttgc agcaccactg      2340
     tctgaagcag ctgaggtgaa agaaggtatt aaatcatgta atattttgca gcattatgcg      2400
     tctttattaa tcaatttttc tctgtcataa tattaatcat tcaattacat ttttttcagt      2460
     tgaagatcaa ctactgactg ttcagcctgg actctgcaaa gcccctgata gtttacctgg      2520
     accttacgtt gctcgagatc ctttacctgg accttcacgt gaccaagaaa cattgcctgt      2580
     gccgaaaaca cccaaatgga gacgaataaa ataactgtgc atatgacatc agtacaggta      2640
     tttcttcata caagtatcgc tacacaactt atttgtcttt tgtaaccata ttgtaacact      2700
     aaaggcactc tttttttcca gatggaaaac ctataggaaa gagatgaccc aatcctgaac      2760
     tcgtcattca ctcatttcat gatacatgta cttcatgtta ctatgtaact tcagctttct      2820
     gttcaatggc atgtacctaa tgtgatctaa atataatttg ataatgtttt tttcaaacat      2880
     actttctctt taatccattc aaaacatcac ttttcagtgc aacacatcga aaatatagcg      2940
     ccggcgagag ataggcaggt gggagggggc gttacactat agggcgcaga aagcattgct      3000
     cgtaattttc tttttggtgc ttccccccat tacgagaaaa tggaatatta tagacgtccc      3060
     ttgtaggaaa tttaatgtac tttcacgtgg tgtagggatt ttgttgataa catgtatatt      3120
     tctcgagttg tagggcgtgc aagtgtgcgt ttttgacgtt ttcgcagaag ggccaaaaat      3180
     ttgctctttt tcattgagtt ctagcgccta tactgctcgt cagaaaatca aacatgagta      3240
     gtgcattttg taggaaattt tgtctacttt aattttgctc agaatgaaca tcttcgagaa      3300
     acgcatagtt ttcgagatat aagcaagaaa ctgaaaaaag tgcgaaaatt ttgaggtttt      3360
     ttgagttttt cgttgtgaag ccgacctcct gcgaggcagc aaacttgaaa ttcgaattca      3420
     gcgcccccaa aaacatacag aaccgttgag aaaaaaactt tcggaatttt gttacggaaa      3480
     aaccaccatt tgactgggct a                                                3501
//
ID   Academ-13_LMi repbase;    DNA;    INV; 3888 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3888
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2954-2954 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(980..1357,1344..1565,1589..3052)
FT                 /product="Academ-13_LMi_1p"
FT                 /translation="MLGLEKKISPEDYTRFALKGWFTIRRSDKFWSGKWSD
FT                 LMIEQTLMRSLKSTGGLSHGRGISDSTLSRWILTMPPVTTVTQQAEEFCGV
FT                 SLTTSEQHADAXMLEFSVTMQTFRNLLSGFNPMIFSCYSFPVTKFVMSIST
FT                 GIVGDDSINCHRAFQMGNSSMLALVGQTFDNIKFVRKKRVMSIQGFKSKVT
FT                 IHGEDVPVNPHFSRNLMNSLKNYSDMSWHPTPLSLFDASGMRKTPKSVLYD
FT                 LFTPLNDVNLEEAAFVIDGGFLLHRAVWKNDETFQLMLTKYVEYLKRHYSR
FT                 SVTSVVFDGYPEDVPTKSIKYAERLHQSKRHTTPEVIFTELMVVTMTQEQF
FT                 LSNDRNKARLISLLISRLEDEGFSVKQANEDADHLIVATALEVSQEHEKVV
FT                 VVGEDTDLLIMLNALATPSANIYFLKPGRGKTSSKVFGSSSFKLANNIRRP
FT                 LIFLHAISGCDTTSALFSQGKKKVVNLLVKNKCLLEDIKPFFEHDTQAEAI
FT                 VEAGLRFLTTLYGGRAGDTLDKLRFDLFSKAIVKSRFNLASLPPTSEAARQ
FT                 HCLRTYLQVQMWIGHQMDPLLWGWQVSEFGLGPVPTSKEPAPQSLLSTISC
FT                 KCNKGCAGSCGCRKAGIKCSLICVNCKGNSCTNSLQPDETDEPDVDEDLDC
FT                 IYEVTKITDFEEPSDGATDSEITDFEEPSGAMTVKRRRV"
XX
SQ   Sequence 3888 BP; 1197 A; 783 C; 779 G; 1127 T; 2 other;
     tagtccagta gggttaaacc taaaaattag acaaatcgga aataattgct acaaaaggtt        60
     ttattgtttt aatggcttca tttgtggccc aatatgacta tcctaggttt tcccctcggc       120
     ggagttgtgc ataagtggtg gggggcaaaa atgtacccga aaaaggggta ctttttcggt       180
     tttgtgatta tatctcgtaa atgactcaca atatcgaaaa catagtacaa ttaaaagttg       240
     tagggcatga aattctgcat tgaatgagac catccgcata ttttttggac cacccgtttc       300
     catactagtg ctcttcaaaa ctggaccaat tttacatgtt catgaaaaat tttcgtttta       360
     acctctggtt tttggtaata tcattgaaac taacccatct atcaataawg tggttcataa       420
     aaacgatata gaggaataaa ttctgcgttt gatgagacca aaagtgaaat ggaccacccg       480
     tttctgtacg gctaagtttg tactttcatt gctatgcatg taaggtactt cacatttaca       540
     aatctaggtc tctagatcag ttttatgcag agaactcaaa aataacatta tcatgagtaa       600
     agtttgaaca gtaatttaat tttttttttt caaagtcagg ggtaaattcc gtgacaagaa       660
     atttaaggtc aactttggca atcccttatt aaacggcaaa gcctttttac accttgttat       720
     tctgcctttg tgtatatgtt ctgcctggca agccagtgta ataatgacaa aactgtatct       780
     tttgtaattc ctaaggtaat ggtccagaaa gttacctcca aaaaatcaga acactacatt       840
     tgaccaaatt tggaggcaaa tatatttata taggtcacct ctgattttaa taaaatgcgc       900
     cgcctccgat gcgttaccct attttcatgc cagtggacat tttctgtacg ctaaatctgc       960
     gcagctgtat ttacaagaca tgttgggcct tgaaaagaaa atatcaccag aagactatac      1020
     acggtttgca ctcaaaggct ggtttactat cagaaggtct gataagtttt ggagtgggaa      1080
     atggtctgac ttgatgattg agcaaacact aatgcgctca ctgaaaagta ccggagggct      1140
     cagtcatggt cgcggcattt cagacagtac tctgagtaga tggattctga ccatgccacc      1200
     tgttactaca gtgacccagc aggctgaaga gttttgtggg gtatcactca ctacctcaga      1260
     gcaacatgct gatgcgakga tgctagagtt cagcgtgaca atgcagacct tcagaaattt      1320
     attgagtggt ttcaatccca tgatcttttc ctgttactaa atttgttatg tccatcagca      1380
     caggaatcgt cggagatgac tcaatcaact gtcacagagc ctttcaaatg ggaaattctt      1440
     caatgctcgc cctagttggt caaacctttg acaacatcaa gtttgtccga aagaaaagag      1500
     tgatgagtat acagggattt aaatctaagg tgaccattca tggggaggat gtaccagtga      1560
     acccctgaaa ccatattcca ccggatagca cttctcaaga aatctgatga acagcttaaa      1620
     gaattattct gatatgagct ggcaccctac tcctctctct ctgttcgatg catctggaat      1680
     gaggaagact cccaagtcag tgttatatga cttgttcaca ccactgaatg atgtaaacct      1740
     ggaagaagca gcatttgtca ttgatggtgg atttcttctc caccgggctg tatggaagaa      1800
     tgatgaaaca ttccagttaa tgctaaccaa atacgttgaa tatctaaaaa gacactacag      1860
     ccgaagtgtg acaagtgtgg tgttcgatgg ctacccagaa gacgtgccca ccaagagcat      1920
     caaatatgct gagcgcctcc accaaagcaa aagacacact actcctgagg tcatctttac      1980
     cgagttaatg gtggtgacta tgactcagga gcaattcctt tccaatgaca gaaataaagc      2040
     acgtctcatt agcttgctta tttcgaggct tgaagatgaa ggcttctcag taaagcaagc      2100
     taatgaagac gcagaccacc tgattgttgc cacagcgctt gaggtatcac aggaacatga      2160
     gaaggttgtg gtagttggtg aggatacgga ccttctcatc atgctcaatg ccctagccac      2220
     accatcagca aatatatatt tcttgaaacc tggaagagga aagacctcat caaaagtatt      2280
     tggttccagc agtttcaaac tggcaaacaa catcagaagg ccactcatat ttctccacgc      2340
     cataagtgga tgtgacacaa cttcagcact cttcagtcag ggcaagaaga aggtggtcaa      2400
     tctactggtc aaaaataaat gtcttctgga agatatcaaa cctttcttcg agcatgacac      2460
     tcaagctgaa gctattgtcg aagctggcct ccgattttta acaaccctct atggaggtag      2520
     ggcaggagac actttagaca aattgcgatt cgacctgttt tccaaagcga ttgtgaaatc      2580
     cagattcaac ctagcatccc taccaccaac gtcagaagca gcccgccagc attgcttgag      2640
     gacctactta caagtacaaa tgtggatagg acaccagatg gatccgctcc tctggggatg      2700
     gcaggtttca gagtttggtc ttggccccgt tcctacctcc aaggaaccag ctccacagtc      2760
     tcttctctca acaatttcct gcaaatgcaa caagggctgt gcaggtagtt gtgggtgtcg      2820
     gaaggctggt attaagtgct cattaatttg tgtcaactgc aaggggaact cgtgcactaa      2880
     ctccctccaa ccagatgaaa ctgacgaacc agatgttgac gaagacctgg actgtatata      2940
     tgaggtgacg aaaattactg acttcgagga gccgagtgac ggggcgacgg actcggaaat      3000
     tacagacttt gaggagccga gtggtgcaat gacagtcaaa cgtcgacgtg tgtgaaattt      3060
     gtgtacatac ctacttttac ccttttcatc tcataccttt atgtaaaatt ttgttattac      3120
     gaaatataat aaccactact taatttcaag aagtgtgtct ctcttcctgc ctccttcata      3180
     tcagttgaat ggatatcact atattatata tgaaaaactt ttttaatatt atttttcaaa      3240
     tattccaaaa ttttaatatt ttattctatt actatattaa aaagtacaag acaatgggtt      3300
     gctatagttc tgtatttaaa agagtgtaca taagaattac tgaagaacta catttgaaat      3360
     agtcttcatt gatgatgaga aatggtccaa ctttaatgag gagctgtaca caaatgggtg      3420
     gtccaataaa ttcacttttg gtttcatcga atgcagaatt tatctctcta tatctttttt      3480
     atggaccaca ttattgatag atgggttagt ttcaacgata ttaccaaaaa acagaggtta      3540
     aaacgaaaat ttttcatgaa catgtaaaat tggtccaatt ttgaagagca ctagtatgga      3600
     aacgggtggt ccaaaaaata tgcggatggt ctcattcaat gcagaatttc atgccctaca      3660
     acttttaatt gcactatgtt ttcgatattg tgagtcattt acgagatata atcacaaaac      3720
     cgaaaaaata ccccttttcg ggtacatttt tgccccccac cacttatgca caactccgcc      3780
     gagggggaaa acctaggata gtcatactag gacacaaacg aagccattaa aacaataaaa      3840
     ccttttgtag caattatttc cgatttgaat gctaattcta ctggacta                   3888
//
ID   Academ-1_AP repbase;    DNA;    INV; 6967 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.04, Created)
DT   30-APR-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   This family belongs to the Academ superfamily of DNA transposons.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-1_AP.
XX
NM   Academ-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6967
RA   Kapitonov V.V. and Jurka J.;
RT   "Academ - a novel superfamily of eukaryotic DNA transposons.";
RL   Repbase Reports 10(4), 643-643 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Academ is a novel superfamily of DNA transposons that populate
CC   genomes of metazoans, including cnidarians, insects, sea urchins,
CC   lancelet, and fish. The autonomous Academ transposons encode a
CC   ~1500-aa protein composed of a novel Academ transposase domain,
CC   which is not similar to transposases encoded by any other
CC   transposable elements reported previously, the XPG domain, and
CC   the putative Cys8 zinc finger. The XPG domain is structurally and
CC   functionally related to FEN-1; divalent metal ion-dependent exo-
CC   and endonuclease, and bacterial and bacteriophage 5'-3'
CC   exonucleases. The Cys8 zinc finger is a conserved set of eight
CC   cysteines:
CC   Cys-X-Cys-X3,4-Cys-X3,10-Cys-X-Cys-X6-Cys-X3-Cys-X1,2-Cys.
CC   Academ transposons generate 3-bp target site duplications and
CC   contain terminal inverted repeats whose length varies from 6 to
CC   530 bp. Usually, Academ transposons have the 5'-TAG and CTA-3'
CC   termini.
CC   Academ-1_AP is a young family. The consensus was derived from
CC   multiple alignment of several copies >95% identical to it. TIRs
CC   are 500 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           2190..6332
FT                 /product="Academ-1_AP"
FT                 /note="Contains the Academ TPase, XPG nuclease, and
FT                 Cys8 zinc finger."
FT                 /translation="MRSSQFAFDFKNCCFICGKDADEKKENKKRKELRLKI
FT                 SHVCTLGFEKNIIDVAKARGDEWAKAVQKRVILNTDLVAAEAKYHQNCLNK
FT                 FNLPVPREKKSGRPANEIVAAAMEEIFSFIENNEDSQFTLNELKEAVSDYL
FT                 PDNKTIKKKLEEKYGDRIIITTKKTGFTIISFRETHINILNQAWYEKKKID
FT                 PNDERRRLLNTCADILRQDIHTKIYETDFYPPSTSLFNDLDENIPETLIFF
FT                 VEKLLLKNNKGNLESKKRVCKTICHMIISALGPRSFRSPLQLGLAVYCYRQ
FT                 YASQRLVDILSSLGVCVSYKEALLYEASSLFHPQPLVSPPEDGCFVQYVCD
FT                 NADHNISSIDGLNTFHSMGMIKIISPYDKINDSQQIVRLSKIPTKIEMANV
FT                 SHIPLKLYNNHGVQGLKTITIKKLNFDQIKVTSIFRNSDVLWWYAKWQADD
FT                 VVGWSGFMEILTREMIHTKSRILFLPFINHSASNYNTIFTTLQYITNDGNK
FT                 DGHTTCVVTLDQPLYLKTREIIATLTGEPMFSNVFVRLGGFHLLMSYLGSI
FT                 GYIMAGSGLKEIMSIIFAPNSVDKILLGHAYSRAVRAHTLIQITLSQIIFK
FT                 EMSFNDEQKEQYKVHLDNFNEELFENIESSKVIEELKLLFEEKIVELKNRG
FT                 PTAKLWLQYFEMTALAKEFIRAERMGDWKMHLVCVKRMLPYFHAAGHYNYA
FT                 KSAHLYVQDMENLENTMDNTAFQKFTNNFFSIKRSNKYFCGTWSDMIIEQS
FT                 LMKSSKSKGGFTRGRSTNESVLNKWVDGLLTASNISEGLEHFCGLYFHSGE
FT                 QHVDASDARIKRDAKDVKRLLDWFNFHDPFPYTESIMSIATGVTGDEKINC
FT                 HVSWSVGMAGMDKKIGSTFGDVKFQRVDRVLSLLTVNSTVKINDTEIAVDP
FT                 LLLFQRIIVIKRTNEELRNYLEYELAPYPLSLFDEAGMRKTTKSLFYDNFE
FT                 KVKSPPDFQNATYVIDGGLLLRKVVWDMNRTYDDICGKYVDYVQNHFGSKA
FT                 IVVFDGYENIRNSVKAVEQLRRSSKSSSVDICFDKQMTVTVSQEKLLSNRK
FT                 NKTRLISMLTEKFEANNFPVKHAQDDADILIIETAIEQSENGTTVVVGEDI
FT                 DLLVILTARTPIDKEVFLLKPGKGMIEQNIYSSRSFNHQGNIKNDVLFLHA
FT                 FSGCDTTSALFHKGKTAALKLMKKRNDLQIAAGCFNNSNTSRETISLNGIK
FT                 FFLAVYGASVKETSINNHRYSCFTKSVGKGKSVKLNLLPPTFEAAQQHLLR
FT                 VYYQIQKWLGNELNPLDWGWVMRDNLLWPKTTTQPPAPDCLLHMIFCNCTK
FT                 GCGPLCGCRRLGLHCSAVCGNCQGLSCLNTEPVEDDQLEKQTMDDTENPEL
FT                 DETNPADFQQHIDDDEDE"
XX
SQ   Sequence 6967 BP; 2447 A; 1021 C; 1169 G; 2330 T; 0 other;
     tagtccactg aaattagttg aaaaaaaggc caaactgggg aataattcat acaaaaggta        60
     ttagtgtgtt tttaggtcta tttaagtgtc ctgaataact cctcaaaagt ccccttcaaa       120
     aaagtgtacg cataacagtt ggcaacactg caaagatgct caaaaacggt ttttcaagat       180
     tttctcagta actattgatt ttacaacaaa aatatgtcta tacaatctga aagaacaaat       240
     aattttacat aaaaaaagat ctatgacttt ttttgtcaga acagtattta tcatgataaa       300
     ttctaatcca attacagttg gcaccaatga aaagacgctc aaaaatggtt tttcgagatt       360
     ttctcgataa ctattgattt tacgacaaaa atacttataa taaaaatgaa agaaaaaata       420
     attttacata aaaaaggttt taaacatttt ttcatcagat caatatttat catgataaac       480
     gccaatcaaa ttatgtaata aataaacaaa tatgtatatt gtatacattt gaatattcag       540
     atatatttaa agattcgatg tactactatc taactgtatc taaccgtacg agactgtcga       600
     cgtcttatcg gtaatattgt tgtcggtcag tatcgatgag ataaatatag aactcattat       660
     attcgatatc ccccgtccca gccagcagtc taccatagtt ccttttcctt atctctaaac       720
     ttacagtcta caaagtctaa tagttgcgtg tttttgtgaa ttatccgact tgacgagtgt       780
     ctcacggcgt catattattt tcatatacgc cgcgtgtgcg cgtgtgtctt ttgctggaaa       840
     gtgcgtcagt cgtggttcag cgggatacag tggtctaaaa agtaacctaa ttaagtaagt       900
     atctaaatta catattattt attttattaa ctatctatat tacccatttg ttaattgatt       960
     taatacaact aaagccataa atattattta actatccaaa tgtatgtaac ttgaaccata      1020
     ttatctatca ccatgaacgt ttatttaatt taactttaag ctgtgattat aagcccattt      1080
     cagtttttat aattattctt tttgaatttc catatacatt ggaacctaag ctgtgtctga      1140
     tattgatatt cctaattgga ataattatat aacttttatg atattagaaa tttaatttca      1200
     atgtttctta ttgatacttt attattgata ctattttata taattattga tatcataacc      1260
     taaagattaa atatagaacg aggagacaag ataaattatt ataataaata atattaagat      1320
     ttaataaatt aggtatttaa tattgtatta aatacctacg tttatataaa tgtaagtcgt      1380
     attatagtac accagaattt gtatacttgt atctcctgtt aatatgaaat agtaaaacat      1440
     aatttcatac aatatactta aaaattatat atttaataag ttaaagatac ttaaaagaat      1500
     aaaatcactc ttggtgaatc tctgtataat atattatttc agaaattcat aatatatcca      1560
     ttaatcctac atttatgtaa aacgaatata aactaaataa atattctata tcaattttaa      1620
     atttaaatta aattttatta attcatggtt aatataaata aaaactaaaa aataatttaa      1680
     tgtaagctaa atttacttta cagaccactg tgagctatcg gttgcatttc tacaagatcg      1740
     gtgactataa tctatattat tattttgtca attgtacatt atcatatatt attgttataa      1800
     ttattgttag ttttggatgt atatcagtaa ttagtgtgcg cccatccatt ttattattta      1860
     gttaataatt attcgatttt ctctaaatcg actgtagact gtagaggact cgtgttacaa      1920
     tgaatgtaag tgacgctcag tgttttattt gtgatcaatc gcttgttgat ggatctactg      1980
     tcgaagttga gcgtggatta gataagttaa tcaatgctag tgttgaaaga ggtgatggga      2040
     aacatgaaca attgcaaaaa ttaagttcaa caaaagttca tgttcaatgc cgtaaagagt      2100
     atacgcgtcc atcgagtatc aacgcatata aaaaaaaaag atagaacgag gaagaagttg      2160
     cagctgcaac gagtcctttg aaaaagaaaa tgaggtcaag tcaattcgct tttgatttca      2220
     aaaactgttg ttttatttgt ggaaaagatg ctgacgagaa aaaggaaaat aagaaacgaa      2280
     aggaacttcg tttaaaaatt tctcatgtct gtactcttgg ttttgaaaaa aatatcattg      2340
     atgttgctaa agcaagagga gatgagtggg ccaaagctgt tcaaaaacgt gtaattttga      2400
     atacagattt agttgcagct gaagcaaaat atcaccaaaa ctgtttgaat aagtttaatc      2460
     taccagtacc tagggaaaaa aaatcgggtc gtcctgcaaa tgaaattgtt gctgcagcaa      2520
     tggaggaaat tttttctttt attgaaaata atgaagactc ccagtttaca ttgaatgagt      2580
     tgaaggaagc tgtgtctgac tatttacctg ataacaaaac tattaaaaaa aaacttgaag      2640
     agaagtatgg agacaggatc atcataacga ctaaaaaaac aggatttaca attatttctt      2700
     ttcgagaaac tcatatcaat attctaaatc aagcatggta cgaaaaaaaa aaaattgatc      2760
     ccaatgatga acgccgcagg cttcttaata catgtgcaga tattttacgc caagatatac      2820
     atactaaaat ctacgaaaca gatttttatc cacccagcac cagcttgttt aatgatctgg      2880
     atgaaaatat tccagaaacg ttgatatttt ttgttgaaaa acttctttta aaaaataata      2940
     aaggaaatct agagtcaaag aaaagggtgt gtaaaacgat ttgtcacatg attatatctg      3000
     cactcggtcc tcggtcattt cgatctcctc tgcagctcgg actggccgtt tattgttacc      3060
     gtcaatacgc gtcacaacgt ttggttgata ttttatcaag tctaggtgta tgtgtatcat      3120
     acaaagaagc attattgtac gaagcttcta gtttatttca tccccaacca cttgtttctc      3180
     caccagaaga tgggtgtttt gtgcagtatg tttgtgacaa tgcagaccac aatattagtt      3240
     ctattgacgg tttgaataca tttcattcta tgggcatgat aaaaataatt tctccttacg      3300
     acaagattaa tgatagtcaa caaatagtaa gattatcaaa aattccaact aaaattgaaa      3360
     tggctaatgt ttctcatatc cctcttaaat tgtataacaa tcatggtgta caaggactta      3420
     aaactataac cattaaaaaa ctgaattttg atcaaataaa agttacgtca atattccgga      3480
     attcagatgt attgtggtgg tacgcaaagt ggcaagctga cgatgtggtt ggctggagtg      3540
     gattcatgga gattttaaca agagaaatga tacacaccaa atcaaggatt ctttttctac      3600
     cgtttataaa tcattcagca agtaattaca acactatttt tacaacttta caatatatta      3660
     caaatgatgg gaacaaagat ggccatacaa catgtgtcgt aacgcttgac caaccacttt      3720
     atttgaaaac acgagaaatc attgcaacgt tgactgggga acctatgttt tctaacgtgt      3780
     tcgtcagact tggtggtttt catttactta tgtcatatct tggatcaata ggttatatca      3840
     tggctgggag tggcctaaaa gaaataatga gtattatttt tgctcctaat tccgtggaca      3900
     aaatattgtt aggtcatgct tactcaagag ctgtgagagc tcacacatta atccaaataa      3960
     ctctttctca aattattttc aaggaaatgt cattcaatga tgaacaaaaa gagcaatata      4020
     aagtccatct cgacaatttt aacgaagaat tatttgaaaa tattgaatct tcaaaggtca      4080
     ttgaagaatt gaaattgttg tttgaggaaa aaattgttga attaaagaac agaggtccaa      4140
     ctgctaaact gtggctacaa tactttgaaa tgacagcgct tgcaaaagaa tttatacgag      4200
     cggaaagaat gggagattgg aagatgcatt tagtttgtgt taaaagaatg cttccatatt      4260
     ttcatgcagc tgggcattat aattatgcaa aatcggcaca tttgtatgta caagatatgg      4320
     agaatttaga aaatacaatg gataatacag cttttcaaaa gtttactaac aactttttct      4380
     caataaaacg ttctaataaa tatttctgtg gaacttggag tgacatgatt atagagcaat      4440
     ctctcatgaa atcgtcaaaa tcaaagggtg gctttacacg tggccgaagt acaaatgaaa      4500
     gtgtattaaa taaatgggtt gatggattat tgaccgcaag caacattagc gaaggccttg      4560
     aacatttttg tggactttat tttcactctg gggagcagca tgttgatgca agtgatgctc      4620
     gcataaaaag agatgctaaa gatgttaaaa gattattaga ttggtttaat tttcatgatc      4680
     cttttcctta tacagaaagc atcatgtcaa ttgcaacagg agttactggt gatgaaaaaa      4740
     taaactgcca tgtatcttgg agtgttggga tggctggaat ggataaaaaa attggaagca      4800
     ctttcggcga tgttaaattc cagcgtgtag atagagtact ttcattatta actgtcaata      4860
     gtacggtaaa aattaatgat actgaaatag ctgttgatcc attattattg ttccaaagaa      4920
     ttattgtcat aaaaagaact aacgaagaac ttcgtaatta tttagagtat gagctggctc      4980
     catatccttt atcacttttc gatgaagctg gtatgcgtaa aactactaag tcactttttt      5040
     atgacaattt tgagaaagtt aaatctccac ctgattttca aaatgccact tatgtcatcg      5100
     atggtggact tctcctgcgt aaagttgtgt gggatatgaa tcgaacatat gatgacattt      5160
     gtggaaaata tgttgattac gtgcaaaatc actttggctc aaaggcaatt gttgtttttg      5220
     atggctatga aaatatcaga aacagcgtaa aagctgtaga acaacttcgt cggtcctcaa      5280
     aatcttcatc tgttgatatt tgttttgata agcaaatgac agttacagta agccaagaaa      5340
     aacttctttc caacagaaaa aataaaacta gattaatttc aatgctgaca gaaaagtttg      5400
     aggcaaataa ctttcctgtt aaacatgctc aagatgatgc tgatatttta ataattgaaa      5460
     cagcaataga gcaatctgag aatggtacaa cagttgttgt tggtgaagat atagatctcc      5520
     ttgttattct aactgctcgt acgcctattg acaaagaagt ttttctcctc aagccaggca      5580
     agggaatgat tgaacaaaat atttattcgt cacgaagttt taatcaccaa ggaaatatca      5640
     aaaatgatgt gttatttttg cacgcattct ctgggtgtga tactacatcg gctctttttc      5700
     ataaaggtaa aacagcagca ttgaaactca tgaaaaaacg caacgactta caaattgcag      5760
     ctggttgttt taataattct aatacttccc gtgaaaccat ttccttaaat ggaattaagt      5820
     ttttcctcgc agtttatggt gcatcagtta aggaaacttc tataaataac catcgttact      5880
     catgtttcac taagtcagtg ggaaaaggca aatcagtaaa attgaattta ttgccaccca      5940
     cttttgaagc agcacaacaa catctccttc gtgtatatta ccaaattcaa aaatggttgg      6000
     gcaatgaatt aaaccctcta gactggggat gggtaatgag agacaacctg ttatggccaa      6060
     aaactacaac tcaacctcct gcacctgatt gtcttttaca tatgattttt tgtaattgca      6120
     caaaaggttg tgggccattg tgcggttgtc gaagattagg tctgcattgt tcggcagttt      6180
     gcggaaattg ccaaggtcta tcttgtttaa atacagagcc agttgaagac gatcagttgg      6240
     aaaaacaaac tatggacgac actgaaaatc cagaattgga tgagactaat ccggcagatt      6300
     ttcaacagca tattgatgat gatgaagatg aatagacaaa ttaatgtata atggattaat      6360
     acaattttat cattggttta aaattttaaa tattacatca tgaaatagta tattatgaaa      6420
     taaataaata atatggtgat aaactgataa gtgaaataaa ctgttttttt ttttatttct      6480
     tacataattt gattggcgtt tatcatgata aatattgatc tgatgaaaaa atgtttaaaa      6540
     ctttttttat gtaaaattat tttttctttc atttttatta taagtatttt tgtcgtaaaa      6600
     tcaatagtta tcgagaaaat ctcgaaaaac catttttgag cgtcttttca ttggtgccaa      6660
     ctgtaattgg attagaattt atcatgataa atactgttct gacaaaaaaa gtcatagatc      6720
     tttttttatg taaaattatt tgttctttca gattgtatag atatattttt gttgtaaaat      6780
     caatagttac tgagaaaatc ttgaaaaacc gtttttgagc atttttgcag tgttgccaac      6840
     tgttatgcgt acactttttt gaaggggact tttgaggagt tattcaggac acttaaatag      6900
     acctaaaaac acacttatac cttttgtatg aattattccg tatcaaaatt ctaatttcag      6960
     tggacta                                                                6967
//
ID   Academ-1_BM repbase;    DNA;    INV; 5870 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   16-MAY-2011 (Rel. 16.05, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 5870 BP; 1518 A; 805 C; 825 G; 1404 T; 1318 other;
     tagtccggtc tatttaagcc taaaatcagg aggaaggtta cataaattcc cataaagctg        60
     aatattggca tagttgttca aaacatcatt ataaagaaaa tctcaaaagt cctcatcgtt       120
     ccgaggtgtg ctaaaaattt ggcacggggt caaaggtcaa aaaaatgagt ttttttgcga       180
     tttttagcga aacggtgagt tttttcgcaa aattacccca gtacaaaatt gtagatcacg       240
     aaattctcta caaaaaatat attaataatt tttttcctaa aagccaccat tttggagata       300
     taacgttccg aaaagttgga tcagtcgtaa tccctctatt ttgcacacgt acgccatata       360
     tgaaagtcac taaaggtgta atagaactaa aataagttcg ctattattta ttgtaacttg       420
     cttatgtaaa atataagtta aactacgaga atctcaggta taatgaannn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       600
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt tccgatgcta       960
     tatcgaaagc tgttgttgct cgaatcgaat ttgactatga tttagttgct gctgaagcaa      1020
     agtatcacca agaatgttat acttcttttt tgaaaccgac tactggtggt acagttggtc      1080
     gtcctaaaga tgaagcaaca gatctggcaa tgcaggaaat atttacatac attgagagta      1140
     gcaatgactg tcagtttact ttggctgagt taaaagatgt tagcaaaatt ttaactttag      1200
     ataacaggac tattaagctg cgacttaaac tgaaatatgg cgataaaatt attatcactg      1260
     aaaaaccggg agcgttaaca tttgtatgtt tgataaacag tcaccatgaa attttaaatc      1320
     aatcttggtc cgaaaataaa aaaattaata aacaagaaga acgattaaaa actctagaag      1380
     cagcagcatc tattattcga gaagatattc aatcctcggt atttgataat tcctactacc      1440
     ctccaccagg tcgaatgttt gaagatttaa ataatgacat cccacagtca ctgacatttt      1500
     ttttggagca aatgatctta aaaaataaac gatcaaattt cgatcattta aaactagtat      1560
     gcaccaatat ttgtcatagt atcatgactg ctattcgacc aagatcgttc aagtccaaat      1620
     tacagttagg tctttcagtt ttttttcatc ggaggttcgg gtctaagcgt cttatacaaa      1680
     ttttgtcgtc ttttggtttg tgtgcttctt ataatgatac attgatgtac gagtcagcag      1740
     cagtttttca tcctcttcct catgtcctac cacctgaaag tggcacactt attcaatacg      1800
     ttgcagataa tgctgatata aatgttaata cgctagatgg taacaattca ctccacataa      1860
     tgggtataat tcaaattgta actccaaagc actctgtttt actagnnnnn nnnnnnnnnn      1920
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1980
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2040
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2100
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc cattcatcca tcaaccagct agtaactata      2160
     atacggtcta tacgacttta ctttgtgcat tagagaacgc gaaacgttac ggccacactg      2220
     tatgcatcgt gactttcgac caacccttgt atgcgaaagc tcgagaaatt gtatcagccg      2280
     cacctgacgg ctctgaagta tcgaagatta ttgtcagact tggaggattt catctactca      2340
     tgtcttatct cggagcaatt ggttatatta tgcaaggtag cgggataaaa gaagtactct      2400
     cagaaatcta tgcaccaaag tcattagaaa aaatgctcaa tggtcatgct tacgcaagag      2460
     ctgttcgagc acatacacta ctccagctgg ctttagcaat tacaatatta aaaacaatag      2520
     atattaatga tatcatggga gcagatttaa tcataaatat tgaccatata ttagatagca      2580
     ctctttcata ttcagatatt gaaaatgata atgaagtatc aggtgcttta cttcataaat      2640
     ttaatatgaa attgaaagat tttgaggaac gaggaccaac agcgcaactt tggatacaat      2700
     attttaatat ggtttcactt gcaaaagaat ttttgagagc tgagcgtatg ggggactgga      2760
     aagctcattt aagttgtgta aaagaaatgt taccttattt ccactcgtca ggacattttc      2820
     catatgctaa atctgcacac ttgtatttac aagacatgat gcaattacag gactcgatgg      2880
     atcctgaagt ttacgaaaaa tttaccgaag gatttttcac cgtgagacgc tcagataaat      2940
     tgagttgtgg aacttctaca gacatggtta tcgaacagtc tatgatgaaa gccatgaaga      3000
     cagatggagg tattgctcga ggaagaagta caaaacaaag tgtaatcagt aaatgggttt      3060
     acagcatgca tgcaatgaac acagtttgtg agaaattaga agatcttgct aatgttagga      3120
     tggatacgac tgaacagcat gttgatgcca gtgattcacg tgtaaaaaaa gacgctaaag      3180
     acatacgaat gcttcttgag tggttctcga ttcatgatcc tttcccagag gttaacaaag      3240
     tcatctcgat tgcaagtggt gtcgttggtg ataatacaat taattgctat aaagcacgtg      3300
     aacttgggct tatctctatt gctaaaataa ctggactgac atttaaagat attaaactta      3360
     aacgcgctga caaagttgtt cctcttttag ctatgagtag caccgtaaaa gttcacgaag      3420
     aaaaagtacc tgttgaccca gtgttattat tccaacgtat gagtgttact gcggcttttc      3480
     aagatgaaat tgagaaatat ttcgagtatg aattagctcc ttatccgtta acattatttg      3540
     atgacattgg aatgcgcaag acccagaagt cggctattta cgattgtttt cagatnnnnn      3600
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      4020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      4080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      4140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnaat      4200
     caatcggaaa tatattcatc aaacagttta tccaattttc ctaaatgtca aaatcatgta      4260
     ttgtttctac acgcaataac tggctgcgat acgacatctg ctttttacag gagaggaaaa      4320
     acaacagttt tcaaaatgtt tgaaaaaaaa gatttactac aatgtgctga agtttttaaa      4380
     aatagtaatt caactcaaca acatgttatc accaacggag ttcaatttct tcttgctatg      4440
     tacggagccc ccaaaaaaac cacttgctta gataagttgc gatacacatc tttcgtgaaa      4500
     aatacgcgta ataaaaaaca agtcaactta gcttctcttc ctccaacctc agtagctgct      4560
     catcaacatc tgtttcgggt atattaccaa gttcaagtgt ggcttggtaa tcagctggac      4620
     cctaaagact ggggttggaa gttgatcgac aatacactag aattagtatc ctattagcat      4680
     gtctcttatt gtccatattg ttcaataaca ggaaatcctt gtacttagct taagtttaga      4740
     catcattata ttctgttatt acatccttta ttgtcaacat taagtagaat caggaaacct      4800
     ttgtacttag cctaagccta tatattgttg taatccaata aagataagca gttgagtttc      4860
     gctcttcaag ccgaacacac gcctccaaat cgctttttaa aaaccctctt gccaacgccc      4920
     acaacctaac tcgagacagt cttaatattg atagatttgt caaaaaatgt tcgttgtgtg      4980
     tttaatggga tgcacttaaa gaaaaaaaaa agcgtaaata ccattttcaa aatatccacc      5040
     tggtgccaga aaaatggcct taacgctcca tttttactcc cctgctgctt ataagtacgt      5100
     gcgtaaaatg ttcaacacat gcttaccaca ccctaatacg ttgtacgaat ggtatcagag      5160
     ggttgatgcg gatcccggat tttgtacaga aactttaaac aggttagaag caaaggcaaa      5220
     agaatttaag aaaaaaatat tatgcgccct tgttgccgat gaggtggcaa taaggagata      5280
     aaaaatatgg acgggcaagc gttatgannn nnnnnnnaca gaaatcttgg acagttatga      5340
     atcagacgac taacttttta ttttaagtat tttatttaat tacaccgccg ttgtttttgc      5400
     ccactataat atataatatt attttgcaat agttttaaaa catataaaat ctcagcagac      5460
     ccgtggaata ggcctactgg ggaaaccacg ttaaaaaaaa cgcgctttgt gtacctcata      5520
     ggtggcgtgg aaacgtgtgc aaaatagagg gattacgact gatccaactt ttcggaacgt      5580
     tatatctcca aaatggtggc ttttaggaaa aaaattattg atatattttt tgtagagaat      5640
     tttgtgatct acaattttgt actggggtaa ttttgcgaaa aaactcaccg tttcgctaaa      5700
     aatcgcaaaa aactcatttt ttgacctttg accccgtgcc aaatttttag cacacctcgg      5760
     aacgatgagg acttttgaga ttttctttat aatgatgttt tgaacaacta tgccaatatt      5820
     cagctttatg ggaatttatg taaacttgaa tgtgtaaata gaccggacta                 5870
//
ID   Academ-1_LMi repbase;    DNA;    INV; 3812 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3812
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2942-2942 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(657..1439,1494..1799,1712..2782)
FT                 /product="Academ-1_LMi_1p"
FT                 /translation="MLFVRAERTGDWGLHVEMVKNMIPFFHAAGHLAYAKC
FT                 AHLYIQQMSTLEDRLTPQEFQKFVTTGQFAIRRTDKMWAGNWSDMTIEQVL
FT                 MRSFKSSGGLTHGRGITSSTLNRWVQGMYACSELIQHFEKFCGIEVTSSDQ
FT                 HVQLRKSRQARDNIDSSKVVAWFASHSPLTNRSELISLSSGIIASEAINCD
FT                 DAVNVGKAAVGRIVGKTFTDVHLHRSDKVRTLAHMTSAVKINDDIVTPINT
FT                 MQLFFRVVVLRKLMRTSRNAENTQKSVLYDILDNSISSDKHLSPPQDCAYV
FT                 VDGGYLLRRVVWSQCLTYKELYGLYVNYVRKHFGNNCVVVFDGYSTPSTKS
FT                 EEHRRRQAKCQSLASTLQKIWLFHAQHKKRRAQTTSGKMSVTCIHFTENMM
FT                 CTVCQEKFLNNSGNKERFIVGLRSHLEFGNILTRQSQADADKLIVGTALEM
FT                 AKEKATMVVGTDVDLLVLLIALAPGNVPIYFQKSSVGKGPSRTYHITSLQE
FT                 ALGDLCQGMLFLHAVSGCDTTSSLFGQGKKTAFRLLQTQPNLRKITSIFNN
FT                 DNTNAQEVTEAGEQFLLALYGAPKGTTSLNSLRYQRFLKAVATRPITSQID
FT                 LARLPPTSAAAREHSKRVYLQVQQWRSKELLPTSWGWVSKNGSLQPVLTQE
FT                 PPAPDFILKLISCKCESGCERNCRCRSVGLQCSVLCGYCNGSGCSNSNIPD
FT                 FDEDDEPSVQECDEKDDSDV"
XX
SQ   Sequence 3812 BP; 1173 A; 680 C; 765 G; 1191 T; 3 other;
     tagtccagga cctttatgca ttgaatagga aaaaattagg ggagagatga aaccttttgc        60
     aatagtctca gtttgatggc ctagttaaca tactaaaagt ccccgaagct ccgggctgtg       120
     gaatcacggt tatgacgtca tcaatatggc cgacctaaga atttgtgctg taatttttga       180
     acggctataa attcccacag aattaacata aaaagtcctt tttgcaccaa attacagagg       240
     aaggggtgaa aaattattat gtagcagtat atcacgtata tataacattc cttctgagtt       300
     atattaatcg aaaaggagaa aatatcattt tttcaaacat tttttggagt ttctcgatga       360
     ataactgggt aattatggaa caaattgaca atttcttttc attaatcttg tagcgcattc       420
     ttagagcttt aaaataatac caatatgttt tcctaccatt aataataagg gagttatctg       480
     aatttgttta ccgaaaggtg taagtgttca ctagtcagac tcacgttctg caatacagtt       540
     ttcccacact ttctcaggag cagcttacgc tttactagaa tagtgacata atgtgagtgt       600
     gtagcaattg gagtgccaaa ttgtgkgtgc agtactatga acaagttagc ataataatgc       660
     tttttgtccg tgctgagcgc acaggtgatt ggggattgca tgtagaaatg gtgaaaaata       720
     tgattccttt tttccatgca gctggccacc ttgcatatgc aaagtgtgcg catttataca       780
     tacaacagat gtcaacactt gaagacaggc tgacaccaca agagttccaa aaatttgtca       840
     ccacaggaca gtttgcgatt agacgtaccg acaaaatgtg ggctggtaat tggagtgaca       900
     tgacgataga acaagtattg atgagatcgt tcaaatcatc tggtggcctg acacatggac       960
     gtgggataac gagtagtacc ctgaatcgat gggtgcaggg gatgtatgca tgttcagagc      1020
     tcattcagca ctttgagaaa ttttgtggta tagaagtaac ctcctctgac caacacgttc      1080
     agctaaggaa atcacgacaa gcacgtgata atatcgattc ttcaaaagtg gtggcgtggt      1140
     tcgcctcaca ttctccgctc acaaatcgtt ctgagctcat atcattgtca agtggtatta      1200
     tagcaagtga ggctattaac tgtgacgatg cagttaatgt cggaaaagct gcagtkggac      1260
     gaattgtagg gaaaacattc acggatgttc atttacatcg aagtgacaag gtgcggacat      1320
     tagcacacat gactagcgct gtcaagatca acgatgacat tgttacacct attaacacca      1380
     tgcagctatt cttcagagta gttgtgttgc gaaaactgat gaggacctcc agaaatgctt      1440
     aaaccatgaa ctgacaactc atcccttatc cttgtttgat gattattaca tgagaaaaca      1500
     cacaaaaatc cgtattgtat gatatattag ataacagtat atcaagtgac aagcatctct      1560
     cacctcctca agattgtgcc tatgttgtag atggtggata tttattgcga agagttgttt      1620
     ggtcacaatg tttgacttac aaagaattat atggactgta cgtaaattat gtgaggaaac      1680
     attttggtaa taactgcgtt gtcgtttttg atggttattc cacgcccagc acaaaaagcg      1740
     aagagcacag acgacgtcag gcaaaatgtc agtcacttgc atccacttta cagaaaatat      1800
     gatgtgcaca gtgtgccaag aaaaatttct gaacaattct ggaaataagg aacgatttat      1860
     tgttggttta agaagtcatc tggaatttgg taatattttg acgcggcaat cacaggctga      1920
     tgctgataaa ctgattgttg gaacagcact ggagatggca aaggagaagg caactatggt      1980
     ggttggtaca gatgtcgatt tactcgtcct tctaattgca cttgctcctg gtaacgtgcc      2040
     catttacttt cagaagtcgt ctgtgggaaa aggcccttca cggacttatc atattacatc      2100
     cctccaagaa gcacttggag atttatgtca aggtatgtta tttttgcatg ctgtatccgg      2160
     atgtgacacg acatcgtcct tgtttggcca agggaagaaa acagcattca gactcctcca      2220
     aacacagcct aatctacgga aaattacttc tattttcaat aatgacaaca caaatgctca      2280
     agaagtaact gaagcaggag agcagtttct gttagcattg tatggtgcac ctaaaggaac      2340
     gacgtcatta aatagtctta gatatcagcg tttcctaaaa gctgtggcaa cacgtccaat      2400
     cacctctcag atagatcttg ctcgacttcc tccaacatct gcggcagcaa gagagcattc      2460
     aaaacgtgtt tatcttcagg tgcagcagtg gaggagcaaa gagttgctac ccacttcatg      2520
     gggatgggtc tctaaaaatg gttctcttca gccagtttta actcaagaac ctcctgcccc      2580
     cgacttcatc ttaaagttaa tatcttgcaa gtgtgaatct ggatgtgaac gaaattgtcg      2640
     ttgtcgcagt gttggtttac agtgttctgt tttgtgtgga tattgcaatg gcagtgggtg      2700
     cagcaactca aatattcccg attttgatga ggatgatgaa ccttctgtgc aggagtgtga      2760
     tgagaaagat gattcagatg tttaagatgt gattcatatt tttaacagca aatttatgaa      2820
     gacattcagc tacttatatt gtaacaattt tattcgtgtg tggcactccg tattggcgtt      2880
     cagtgtgcaa tctgttcatt ttttgcacat atgtgttaat tattgctggt cagagtgcac      2940
     ccttattagt tgattcaatg acaaaataat attgttagta atggttcctt tttgacaaaa      3000
     taatttacgt ctcaccttta accaggcagt aaagctggta aatataaaca catatatgta      3060
     tatataaatg aatgaatcca tatcattcat gtaaatttkt aatacaaatc agcgctttgt      3120
     atatttagat atatattatt tatttttgta aaaataaatg ctgagatgtg tgcaatgttt      3180
     atagaaacag tcgtttcact atcttttgag aatattcaca tgtacttgca agtcttgaac      3240
     aaggttttaa gaaatatctc cttacaattc taacatgcgg tctgactagt gaataatcac      3300
     accttacagt aaataatttc agataactcc cttattatta atgataggaa aaacatacta      3360
     ctattgtttt aaatctctaa gaatgtgtta cataattaat tttaaaaaat catcatttcg      3420
     ttgcataatt acgtgcagtt attaatagag aaacttcaaa aaaaggttga aaaaaattat      3480
     atttttttcg tttttgttag tatagctcag aagaaatgtt atatatacat atgatattgc      3540
     tatataaacg tttttcaggt cttcctctgt aatttggcgc aaaaaggacc tttttatgtc      3600
     aatcctgtga gaatttatag ccgttctaag attactctac agtttcttag gccgccatat      3660
     tgatgacgtc ataaccgcga ttccacagcc cggagcttcg gggactttta gtatgttaac      3720
     taggccatca aactgagact attgcaagag gtttcatctc tcccctaatt ttttcctatt      3780
     caggcccttt tttgcataaa ggtcctggac ta                                    3812
//
ID   Academ-2N1_LMi repbase;    DNA;    INV; 2961 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 19.11, Created)
DT   16-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Academ-2N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2961
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2883-2883 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 2961 BP; 883 A; 588 C; 558 G; 932 T; 0 other;
     tagtccagtc aaatggtagt ttgaagtcga aaaatttggt gtaattgttt ttagtggttt        60
     attttatgtt ttttgggtgc tgaacacgaa tctgaagttt tccaacaaaa attccctcgg       120
     caaatatgag aaatcaacaa aaaatcacta aaaatcacat ttttttgcgg ttatcaactt       180
     ataactcata aagcaagcta tttacacgaa aagtggccga gtagtaaaat aaagaggaga       240
     aaattaccta caatttatgt ctgtaacatt tttctgtaag tcgtatggtt tccacaaaaa       300
     acagtggtaa aatatcagga aaatcagtca ttttttgaaa acagcaaaaa agaacattaa       360
     tatatagttt ttatttcatg aaattaaaca ttattgtaaa tccttataaa agagaccacc       420
     tattctaatg atgacattat caaattcggg atctccttgt tggcaagcta caataaatct       480
     tgcctttagg tatagaggct ggtcgaaggt gttcacagtt gcttgttgat tcattgattt       540
     gctctgttct atggatgcga ctaaagctgt atatattgta ttgtgatcag atggtggagc       600
     gtttataaat ggtagacaag caacataggt tgtatgaaag gggagactac ttgtgatttg       660
     ctccatgaag ccactccatc ctggaattcc aggcacatct ttccacttgc cataaagcca       720
     aagtagatct gataaagagg gtaatattga atcaggtgat acaaatagct gtttgagatc       780
     ctcaatgttg atattcttta acccaagaga acgtgtcttc tcaaaatgtt ttaaggaaac       840
     agctcccatc tcaccaatta gtggagctgg tattggtttc tttactcgga caattctttg       900
     atccggagca atggcatgga aggtattata tccatccaat gtacgtgtgt taaaatcagc       960
     gttgtcatga acaaattgat ggaaagctgt cggatctatt tgtagtggtg gcctcatgat      1020
     tgctgacact tcaagacgaa cagcttcgga ataagaggcg caaaatccca aggatgacac      1080
     aacatcaatc agttttcgtg atccatactt cttataaaag ctgatagccc aatttgtaac      1140
     ggggaaagga aagaagttgg cctgacagca ctaataacac tgtgtgaaat ggctaaaact      1200
     tttttttccc cttgtcagtg cttgttcgct tcttcttgag tatcagtctt tccaagaaaa      1260
     ctttgagaac ctccgggaca aggctttcat tttcgtccat gaaagagtct ggaggaggat      1320
     agtcgtccat agcatacggt attgatcgta tctcttcaag aattacatca gctgctgtct      1380
     caactaatcg aagacgttct tcccgttctg acgaacgtct ttccatgtac cacgcttcag      1440
     tcaaaatctt atggcctgta tttttgaaac atacgactgt attctgtttg atctttgata      1500
     cgataatatc ttccccatat ctatccaata aatgttgtat tacagttctt ctttcaggaa      1560
     ttaagttgcc ctctatctga gttattagct gatctaatga aaactgacat tcctcgtcat      1620
     tcctttccat aaaattgaaa atgtcattca tagccctctg aatctcttca gcataagggc      1680
     caacggtttt ctttttatca gccttggacc tactaatgta aagatttttt aaacatttat      1740
     catggtactt acagtcagca gccaccatgt ctgttatcgg ctggatcctg ttaataactg      1800
     ctgcaccgaa atcatctcca cgtagttgag cctgtttcat aactgtgtct ttcatctcaa      1860
     ttttcgtcac cagatgcacc aaattacgtt tatgaggagg cagtcgttgt tgtgaccttg      1920
     cgtaatcttc aggaatacct gttccacaca caaaacaatg tgttttccaa tggaaatagt      1980
     cagaggatga tcttaatttt cctgaagatg tgcttggttc agcagctttc ttcaagtagg      2040
     cagctatcat tctttcattt atgtaacttt tctggcatga aacatgtacg ctgacagatg      2100
     ttttacccgc taaaacagcc accttcctat catttctttt ttactagcat cacgtaaagt      2160
     ttctattcct ttttccttga ccactatcac tgcaccctca cctaaatctt tttcacaaat      2220
     aaaacactta tcactcgaca ttgcgcccga gttgttgcgc tatatctcaa cgaaaacatt      2280
     caaacatagc ttcacgtctt tgagagaaag ggaaataaca cgatcacggc agcgaacgta      2340
     cacaaactgg agaattgagg acagttcggt gtttcggcag gaagaccccc cttcgcctgt      2400
     cataaattta agggcagcgg ccgcaaaggt gggacggagg ggcgggccgc agccacaggt      2460
     agacggacag cgtgggcgcg cagctgagtg cacggtcaca aaggacaaaa agaagagctg      2520
     cttccatggt tcgcaaggta aacacgttga aaggcaagga actgctgatg aaataatcca      2580
     cccgaaaaaa catgcaattt ttttttctat tttccaaaat ttactgattt caccgctttt      2640
     tcaacgctgt tttacgtgga aaccatacga cgtacaaaaa aatgttacag acataaattg      2700
     tgggtaattt tctcctcttc attttattac tgggccactt tttgtgtaaa tagcttgctt      2760
     tgcaagttat aagctgaaaa ccactgacaa ttgtgatttt tagttgtttt ttgatgattt      2820
     ctcatatttg ccgatggaat ttttgttgga aaacttcaga ttcgtattca gcaccccaaa      2880
     aaacataaaa taagccacta aaaacaatta caccaaattt ttcgactttg agcccttttt      2940
     gtgcacgatt tgactggact a                                                2961
//
ID   Academ-2_LMi repbase;    DNA;    INV; 3026 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3026
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2943-2943 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           598..2259
FT                 /product="Academ-2_LMi_1p"
FT                 /translation="MGMKSIQCIVAGDFQRIKFKRSERVRPLAIMNSSIQI
FT                 QDRAVVINPTTLFQRMTIVKHSDEELREFLCYELSPYPLSLFDEHGMRKGT
FT                 KSGLYKAFSPTEQADLNGTKYVIDGGFLLHRVKWHHAQTYAEICDSYISYV
FT                 KSNYKSNVVVIFDGYPDEVCESTKGLERLRRAQRKQSATISFTETMMPTVS
FT                 QESFLANYKNKGRFIRMLMEKFHVAKIDSRQAVEDADTLIITTALNLAPAN
FT                 EYVTVVGEDIDLLVILMGLCSPDVKNVFFLKPGKGKVPPTLYNPHLAADRT
FT                 VSHHILFLHAMSGCDTTSALFNQGKLKFIKVLQKYNDLQTVIDVFYNPRAH
FT                 QDEIAEAGNMFLKKLYGKGHQTSLNDLRYRQYVSISYKSKTNIASLPPTEA
FT                 AARQHSLRVYFQVQQWLSSKITLDEQQRDPSEWGWKKKTRNGLVPVPTTLD
FT                 PAPDSILRHISCKCKNGCQRNCGCRKAGLHCSPICTSCEGLCNNVKPPEIS
FT                 TDVEDEEIEEEDKEQAEETHLHHVEGMSNLTICFVTILLEICSLVIDFSPT
FT                 SFIFQMK"
XX
SQ   Sequence 3026 BP; 958 A; 630 C; 595 G; 843 T; 0 other;
     tagtccagtc aatatgtatt tttaccagga aagttttggg gtagttttga tttcttcgat        60
     tccgtatgtt ttttggtgtg ctgaatccga atctgccatt tcccaacaaa atttcgtgac       120
     gcaacattga aaaaaagcaa aaattcgaaa aaatagcatt tttcggcggt tttctgctta       180
     taactcggaa actatcaact tttcacaaat tgcctcccag tacaaaattg aagtccataa       240
     aatttcctac agatttcact acttatgttt tgctgtcaga cgaggcgttc cggctcaagc       300
     gctaattgaa aattggcgta ttttggctgt ctccgctaaa atccactttt tccactcaag       360
     aataattcat tattaaaagc tgacattcag tgaatttttt attttattta ttctctcccg       420
     acctctttat atcgttttat aactgaccat ctggtttaaa tacctttcca gacaagctcc       480
     cacccacaat acgacaccct caatcgtcag aacaacactg acatgtgcaa aagcgcaaac       540
     tgagcacata agttctaatg tcggagatag acgataaact gccacttgtc caaagagatg       600
     ggcatgaaaa gtatacagtg cattgttgct ggtgatttcc aaagaataaa attcaaacga       660
     agcgaaagag tgcggcctct tgcaatcatg aacagctcca ttcagataca agacagggct       720
     gtagtcatca atccaactac actttttcag cgaatgacca tcgtgaaaca ttcagatgaa       780
     gagctgcgag aatttttgtg ttacgaactt agcccctacc ctctctctct tttcgatgag       840
     catgggatga ggaaaggaac caaatcgggc ttgtacaagg ctttttcacc gactgaacag       900
     gcagacttga atggtacaaa atatgtaatc gacggcgggt ttttgttaca tagggtcaaa       960
     tggcaccatg cccagacata tgcagaaatt tgcgacagtt atatatctta cgtgaagtca      1020
     aactacaaat caaatgtcgt tgtcattttc gatggttacc ctgacgaagt ttgtgaaagc      1080
     accaagggct tagaacgatt aagaagagcg caaagaaagc aatctgctac aatatcattt      1140
     acagaaacga tgatgcctac tgtttcgcag gagagtttcc ttgcaaatta caaaaacaag      1200
     ggacggttca tacgtatgtt aatggaaaaa tttcatgttg caaaaattga ttcacggcaa      1260
     gctgtggagg atgctgatac actaattatc acaacagccc ttaacttagc cccggcaaat      1320
     gaatacgtga cggtggtggg agaagatata gaccttttgg tgattttaat gggtctgtgt      1380
     agccctgacg taaagaatgt cttctttttg aaaccaggaa aaggaaaggt gcctccaacc      1440
     ctctacaatc ctcatcttgc cgctgacaga actgtatcac atcatatatt gttcctgcac      1500
     gcgatgagtg gttgtgacac tacttctgct ttgtttaacc aggggaaact taaatttata      1560
     aaagtcctgc agaagtacaa tgacttgcaa acagtcattg atgttttcta caaccctcgt      1620
     gcacatcagg atgagattgc cgaagcaggg aacatgtttc tcaagaaact gtacgggaaa      1680
     ggacatcaga ctagcctgaa cgatttgcga tacaggcaat acgtatctat ttcttacaaa      1740
     agtaaaacca acattgcctc actacccccc accgaagctg ctgcacgaca acattcactg      1800
     agagtttatt ttcaagtgca gcagtggtta tccagtaaaa ttactctcga cgaacaacaa      1860
     agagacccaa gcgagtgggg atggaaaaaa aaaacaagga atggtcttgt ccctgtgcca      1920
     acaactttgg accctgctcc ggactcgata ctccgacaca tttcttgtaa atgcaagaac      1980
     ggctgccaac gtaattgtgg atgcaggaaa gcgggcctcc actgctcccc catctgcaca      2040
     tcctgtgaag ggctgtgtaa taacgtcaaa cctccagaaa tcagcactga tgtagaagat      2100
     gaagagatag aagaagaaga caaagaacag gctgaagaaa cacacctgca ccatgtggaa      2160
     ggtatgtcaa atctcacaat ctgtttcgta acaattctcc ttgagatatg ttcactggtc      2220
     attgatttct cacccacctc cttcattttc cagatgaagt agcccgaaca ctggcgacag      2280
     aacaacctgc acctatgcca ggacccaccg ccttcgaaga acctcaggca ggaccctctt      2340
     ggaaacgaca gcggcatata taattgatgc acataataat gtattctgtg taatacaatg      2400
     taataatatg tataaaattt tcaaaatttt gttcggaatt tcaactttct gtgacaattt      2460
     gtacaatttc tgattttatt aataacttga acttcatgta atttcttttt taatttcgta      2520
     taactttaca tatatgatct aaagaaggtg tgcatagaga actgggagaa gcagtggata      2580
     ccagtctaca ttctatacga cttagaactt gtaggaattc actaaatgtc agcttttaat      2640
     aatgaattag acttcttgag tggaaaaagt ggattttagc ggagacagcc aaaatacgcc      2700
     aattttcaat tagcgcttga gccggaacgc ctcgtctgac agcaaaacat aaatagtgaa      2760
     atctgtagga aattttatgg acttcaattt tgtactggga ggcaatttgt gaaaagttga      2820
     tagtttccga gttataagca gaaaaccgcc gaaaaatgct attttttcga atttttgcat      2880
     tttttttcaa tgttgcgtca cgaaattttg ttgggaaatg ccagattcgg attcagcacc      2940
     ccaaaaaaca tacggaatcg aagaaatcaa aactacccca aaactttccg gctaggggcc      3000
     ctattgagca caagttgact ggacta                                           3026
//
ID   Academ-3_LMi repbase;    DNA;    INV; 5109 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5109
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2944-2944 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..2136
FT                 /product="Academ-3_LMi_1p"
FT                 /translation="MSANRAQMFCLKISTSASFYSVVRIFSTMDPEEGNCF
FT                 ICENPLQGSEVSEVKEKGLETFRKSSAKRKDNKKKLLEGLKTIVVHDVCRK
FT                 RYNNEKLISAFLRRGGDVESSHPRLRSTTTATFSFRNHCFLCAAEITAEFI
FT                 AKQKQTRLCERNIVYSVRKLSMKNTISQIARARNDDWGRAIVERLEQVNDL
FT                 VAADAQYHNSCMKKLYQRPTNEDIKKRGPCANEIDTAMQYIYSYLEQNSEE
FT                 CQFSLDELMTKIECDYHPHIKTVKAQLLKKYGDDILIAYTANKAPVVCFRN
FT                 TGYKLLTEAWYNEKTANKAEERRRIVKTAAAIVLEDIRSKVYETTYYPPSD
FT                 NFFQTVESDIPETLGVFLDHVILRNKRASLEKWKKKSISLAHCIITAARPK
FT                 SFVSAMQVGVAAFLYQKYGSRRLIDTLSSLGYCSSYTEAMLFEVSAIMRPP
FT                 LEIYSNAFSQFVFDNADFNTQTLDGHNTFHAMGGIQCITPRNAIAPDQNIQ
FT                 RLQQMPSLTIQKSYKNEVH"
FT   CDS           join(2600..2815,2794..3309,3138..4001,3958..4299)
FT                 /product="Academ-3_LMi_2p"
FT                 /translation="MTKNKGYLQLDSDKFWCGTWSDMTIEQSLMKTMKGLG
FT                 GLTHGRGIKDSVLSKWTLGMVFLHNVCEKLNNFATEVEQFCNVACSTSEQH
FT                 VEMTNSRINRDNGDVQKLTDWLCQHFPFPEVKELMSISTGIIGDEKINCHM
FT                 AEEIGSTGISNIIGGDFYNVKFKRNGRVKALGVMNTGIRIDDDIIPINPLL
FT                 IFQRMCIAKNLMRNLKISLHTNLRRFRYRFSITKACASALNLLYIRHLRNI
FT                 MEISLVNFSKNVHCKKSDEELENFLAYELAPFPLSLFNYEGMRKCVKSSLY
FT                 KAFEEYYGDINFGNSMYVIDGGYLLHRVVWNRGETFSSICNNYVAFVKSKY
FT                 TSNAIIVFDGYPEDAAERSTKYAERSRRSRKHASVDMLFDETMIPTVSQDK
FT                 FLGNDANKNRLIRMLKTKFEAANFVVKQATEDADTLIINTAISISSAFDSV
FT                 IVVGEDVDLLILLTALSPRSNIYILKPGKGTISQRIYSTESIIDKTVADNI
FT                 LFLHAFSGCDTTSALFNQGKMKCVNLLRKKKKNRFKNVSIYSEKKKKTDLN
FT                 ELVRAFKNXNSDPEIIAEAGERFVLALYGYSDVKSMSLNNYRYKCFTKSAF
FT                 RGKFNLASLPPTKAAARQHSFRTYHQVQRWYGVEKMQNDGDGKKARMG"
XX
SQ   Sequence 5109 BP; 1620 A; 989 C; 1084 G; 1415 T; 1 other;
     tagtccagtc atttggtgtc caaaaagggg gttacctgga aagttttgcg ggagttttga        60
     aaattggtat acttatagat tttgatgtgc tcttttcgaa ttttcacttt gccacctcgt       120
     atctttgccg ctcgcgccgc catattggaa aaatggcgcc caaaaacagt tttttgacga       180
     tatctccttt cccacgcatt ttacgatgaa aatagttatg agataaatta aactagagaa       240
     aatttcctac aatttatgtc ctaacctttt tttttaaaat gaatagtttc cgtgtacgag       300
     cgcagcaaag gctactaaac gaaaaatatt ttacttagcg gtgaaaacct agtctgctgt       360
     ggcctgcccg tggctacacg gcctgtctca ggtatagcgg gatttccctt cttgaccctg       420
     gggactttcg gaccccttcc acatacgagt gccgcaaagt ctacttgaaa aatattttac       480
     tgcgcggtga aaacccggcc tactgcggcc tacttgaggt tacacggtct gtcacaggta       540
     tagcgggatt tccttccttt accctgggga cgtttggatc ccttccacga aatgtctgcc       600
     aaccgagctc aaatgttctg cctgaaaatc agtacgagtg catcgttcta cagtgtcgtt       660
     cgcattttca gtaccatgga tcctgaggaa gggaactgtt ttatctgtga aaatccattg       720
     caaggaagtg aggtgagtga agtgaaggag aaagggttgg agacatttcg taagtcaagt       780
     gctaaaagaa aggacaacaa gaaaaaactc ttggagggac tgaaaacgat agtggttcac       840
     gatgtgtgtc gcaaacgcta caataatgag aaattaatct ctgcattttt gcgtagagga       900
     ggcgatgtcg aatcttctca tccacgactg cgatccacca ctaccgcgac attctcattc       960
     agaaatcatt gctttttgtg cgctgctgaa ataacagcag agtttatagc gaaacaaaaa      1020
     cagacgcgct tatgcgagcg taatattgtg tatagtgtgc gtaaattatc aatgaaaaac      1080
     accatttcac agattgctag agctcgtaat gatgattggg gtcgagcgat tgttgagcgt      1140
     ctcgagcaag taaatgattt ggtcgcagcc gatgcacagt atcacaactc gtgcatgaaa      1200
     aaattgtacc aaaggccaac gaatgaagac ataaaaaaaa gaggtccgtg tgcaaacgaa      1260
     atcgatactg caatgcagta tatttactct tatctcgaac agaattctga agagtgtcag      1320
     ttctctctag atgaacttat gaccaaaatt gaatgcgatt accacccaca cataaaaact      1380
     gtgaaggcac agctcctcaa aaaatacggt gacgatattt tgattgccta cactgccaat      1440
     aaggctcctg tggtttgctt ccgaaacaca gggtataaat tactgacgga agcctggtac      1500
     aacgaaaaaa ctgcaaacaa ggccgaagaa cgtcgacgaa ttgtaaagac agctgcagca      1560
     atcgttctag aggatattcg ctccaaggta tatgagacaa catattatcc tccatcagat      1620
     aatttttttc aaacagtaga gtccgatata cctgagactt taggggtttt cctggaccat      1680
     gtgatattga gaaacaaacg tgcgtctctt gagaaatgga agaaaaaaag tatttctctt      1740
     gctcactgca taattaccgc agcaaggccg aaatctttcg tgtcggcaat gcaagtcgga      1800
     gtagcagcat ttttgtatca aaagtatgga tctcggcgac taatagatac attgtcatct      1860
     ctcggatatt gctcctcgta caccgaagca atgctttttg aagtttcggc tataatgcgc      1920
     ccaccgttgg aaatctacag caatgcattt tcgcaatttg tttttgacaa cgcagatttc      1980
     aatacgcaga cattagatgg tcataatact tttcatgcca tgggcggtat ccagtgtata      2040
     acgcctagaa atgccattgc tccagatcaa aatattcaac gattacagca aatgccgtct      2100
     ttgaccattc agaagagtta taaaaatgaa gttcattgac ttattgtgct ataggaaaat      2160
     gggctaacac ctaactacct ggatggagtg tttatggaac aagtgacagt caacttccct      2220
     tcaaaacatt ttagatgctg ccttaattca ccaccaagta atctgcacaa ttttaacttt      2280
     ctgttacctt gcactacatc agcaactttt tcgtcacttt gcctgtattt caaagcaatt      2340
     gtatcctcat gatgaggact aaattgagta atgttgtata gctctggatt tttcgttcag      2400
     gatccatcga tatataatgg ctggaagatt gaaaagtttt cataccattt atgcatgaat      2460
     tcaattgaga aaattaggta agaggcatcc tttcaattgc taacatgcag tcaatggatt      2520
     ctgtcaaatt agtatttatg gtccttgtaa atggttacat ctgacccaaa aatccttctt      2580
     cagtttgtca cttttgatta tgacaaagaa taaaggatac ttacaattag attccgacaa      2640
     attttggtgt ggtacgtggt cagatatgac gattgagcaa tcattgatga agacaatgaa      2700
     aggcctaggc ggtctgactc atgggcgagg aatcaaggat agcgtgcttt ccaagtggac      2760
     tttaggaatg gtgttcctgc acaatgtttg tgagaagttg aacaattttg caacgtagct      2820
     tgctccactt ccgagcagca tgtcgaaatg acaaactcac ggattaatcg tgacaatggc      2880
     gacgtacaaa agctaacgga ttggttgtgc cagcattttc ctttcccaga agtaaaggaa      2940
     ctcatgtcaa taagcacagg aattattgga gatgagaaaa taaactgtca catggctgaa      3000
     gaaattggta gcactggaat ttcaaacatc atcggtggag atttctataa cgtaaaattc      3060
     aaacggaatg gtagagtgaa agcacttggt gttatgaata caggcatccg gatagatgac      3120
     gacattatac cgattaatcc cttgttaatt tttcaaagaa tgtgcattgc aaaaaatctg      3180
     atgaggaact tgaaaatttc cttgcatacg aacttgcgcc gtttccgtta tcgcttttca      3240
     attacgaagg catgcgcaag tgcgttaaat cttctctata taaggcattt gaggaatatt      3300
     atggagatat aaattttgga aactccatgt atgtcatcga cggaggatac ttattgcaca      3360
     gagtcgtttg gaatcgaggt gaaacgtttt catccatttg caataattat gttgcatttg      3420
     ttaaatccaa atatacatcc aatgccatca tcgtattcga tggatatccg gaagatgcag      3480
     cagaacgtag taccaaatat gcggagcgat cccgacgatc acggaaacat gcttcagtag      3540
     atatgctttt tgacgagaca atgatcccaa ctgtgtcgca agacaagttt ctgggcaacg      3600
     atgcaaacaa gaaccgcctc atcagaatgt tgaaaaccaa atttgaagct gcaaacttcg      3660
     tggttaagca agcaacggaa gatgcagata cgctaataat caacacggca atcagcattt      3720
     catctgcatt tgattccgta atagttgtcg gtgaagatgt agatcttctt attcttttga      3780
     cggctctatc cccgcgttca aacatatata ttctcaaacc aggaaaagga acaatttcgc      3840
     aacgaatata ttcaacagaa agtatcatag ataaaacagt cgcagataac atactattct      3900
     tgcatgcctt cagtggctgt gatacaacat cagcactctt caatcaagga aaaatgaaat      3960
     gtgtcaatct actccgaaaa aaaaaaaaaa acagatttaa atgagcttgt tcgggcattt      4020
     aaaaaccmaa atagcgaccc ggaaatcatt gctgaagctg gagaacgctt cgtccttgca      4080
     ttatatggtt acagtgacgt aaaaagtatg tcgttaaaca actatagata taaatgcttc      4140
     acaaaatcag cattcagagg taaatttaat cttgcatcgc tgccaccgac aaaagcagca      4200
     gcacgacaac attcatttcg aacctatcac caagttcagc ggtggtatgg agtggaaaaa      4260
     atgcagaacg atggggatgg aaaaaaagca agaatgggct aattgctgtc actacattcg      4320
     agcccccagc tccagagaaa ttattgaaac ttatttcttg caaatgcaga aagggatgtc      4380
     agggagcttg tggatgcaga aaggctggat taaaatgctc cgttatttgc gtgaattgca      4440
     gtggtacctg tcataattcc gaagttccac aacaggatag tgatgaagag gaagaaacgg      4500
     agactgttct tcagcaaacc tacgacgaaa tcgaggaaaa aggtgataac gtcgaagaag      4560
     agaaccctat tgcgggtagt gcgtaagaac tttgtatccg tgaaattttg ctggattatg      4620
     tacacgaaga actcgcagaa cttggtctgt cagggatagc gtggcgaaga agaatgcact      4680
     aaatttaatg atcagtgcat catttgtgga ctaggcctac tggggcccat taaaaaaaaa      4740
     aagcgccagt tactctacct catggtggtg tggaaatgag ttttttcgtc aatacgcgtg      4800
     ttgcagttta ctttgcggcg ctcttaatct gaaactattc atttaaaaaa aaaggttagg      4860
     acataaattg taggaaattt tctctagttt aatttatctc ataactattt tcatcgtaaa      4920
     atgcgtcgga aaggagatat cgtcaaaaaa ctgtttttgg gcgccatttt tccaatatgg      4980
     cggcgcgagc ggcaaagata cgaggtggca aagtgaaaat tcgaaaagag cacgtcaaaa      5040
     tctataagta taccaatttt caaaactccc gcaaaacttt ccaggtaaaa ctaccaaatg      5100
     actggacta                                                              5109
//
ID   Academ-4_LMi repbase;    DNA;    INV; 3005 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3005
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2945-2945 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(519..650,613..1431,1435..1764)
FT                 /product="Academ-4_LMi_1p"
FT                 /translation="MKLRRKDKVVTLASVSCSLKIKDKKFTIQPLTISTDL
FT                 HPQTIRCLFQRICILKQSDADLRNLFDYELAPFPMSLFTEEGMHKGRKSML
FT                 YEAFTPIEEPVDFGSRKCAVIDGGYLLHKVVWSKSTEATFELVCQNYVDFV
FT                 KKHFGSNAIVVFDGYPVDISYQSTKAIERYRRSLLHSSTKFLFSKTSVITI
FT                 SQAKFLSNDFNKKNLITLLMSEMEAKGIQVKQAMEDADVLLVETAISEANN
FT                 FDSVVITGEDIDLLVLLTALASSKNNIYFQKSGRGNTPSVLYSAHSCKFST
FT                 QDILFLHAVSGCDTTSAPFGIGRRRCKFMRKTWLSDVVGVFKDPDATTHQI
FT                 SEAGEKFLVKLYGGTIDADKLEDLRYRVFSSNVSVKANFQLARLPPTSDAA
FT                 KYHSFRTYLQVQRWLGSPQKLPSAWGWKLTKHG"
XX
SQ   Sequence 3005 BP; 917 A; 582 C; 616 G; 890 T; 0 other;
     tagtccaggc ggcaggtcgt aaaaaagggg ttacctggaa agtattccga acttaatgaa        60
     attttagtat gttgtgtgta ggtactctgt ggagtagaat ctgagttttc gacctcgagg       120
     accctgtgct aactttgcag gggccgaaaa acctcgaaat ttttggcctt ttttcactat       180
     ttcgcttata acttctaaac catgcgtttt tcgcgaaaca tacctctgaa caaagttgaa       240
     gagcataaaa tttcctacat atttcactgg tcaaaagtgt tttttgaccc actaatgact       300
     gagatacaga tgttcaaaaa tacagtaatt ttctaaaatt accaaaaata gctccaaaac       360
     tcaatttttt gccttatatc cagtagggat aaacctaaaa attagagaaa tggaaataat       420
     tgtacaaagt tttattgttt taatggctac gtttgtgccc aatagactat ccaggtttcc       480
     ccctggcgga gttgtgcata agtggaaatt tcgcagatat gaagttgagg cgtaaggata       540
     aggtggtaac tctagcatcc gtttcctgtt ctcttaaaat caaagacaag aagttcacaa       600
     tacagcctct gactatttca acggatttgc atcctcaaac aatcagatgc tgatctcagg       660
     aacttgttcg attacgaact agctcccttc ccgatgtcgc tcttcacaga ggaaggtatg       720
     cacaagggca ggaagtcaat gttgtatgag gcgtttactc caatagaaga accagtagac       780
     ttcggcagca gaaaatgcgc agttattgat ggtggatacc tactgcataa agttgtgtgg       840
     agcaaatcaa cagaagccac atttgaactg gtgtgccaaa attacgtgga ttttgttaaa       900
     aagcactttg ggagcaatgc cattgtggtt tttgacgggt atcctgttga cataagttac       960
     cagagcacca aagcaataga aagatatcga cggtctttgc tgcactcttc aacaaagttt      1020
     ttattttcca aaacatctgt tatcacaatt tcacaagcca aatttctttc caacgatttc      1080
     aataagaaaa acctcattac attgctgatg tctgaaatgg aagccaaggg aattcaggtc      1140
     aaacaggcaa tggaagatgc cgatgtcctg ttagtggaaa cggctatatc agaagctaac      1200
     aatttcgaca gtgtcgtcat aacaggagaa gacatcgatc ttttggtttt gctgacagca      1260
     ttagcttctt ctaaaaataa catttatttc cagaagagtg ggagaggtaa cactccgagt      1320
     gttttgtatt cggcccattc ctgtaaattc agcactcaag atattctctt cctccacgca      1380
     gtgagtgggt gtgacaccac ttcagcgccc ttcgggattg ggagaagaag gtaatgcaag      1440
     tttatgagaa aaacctggct ctcagacgta gttggtgtct ttaaagaccc tgatgcaaca      1500
     acacaccaaa tttctgaggc aggagagaag tttctggtga aactgtacgg tggaaccatc      1560
     gacgcagata aactggaaga tctgcggtat cgagttttct catccaatgt ttctgtaaaa      1620
     gcgaattttc aactggctag actgccacct acaagtgatg ctgccaagta ccactccttc      1680
     aggacatacc tgcaagtaca aagatggtta gggagcccac aaaaattacc gtcagcttgg      1740
     ggatggaaac tgaccaaaca tggttagtat tgttcatggt atttgtcatt ttttttaaaa      1800
     tttctaccat acctgtgtgc tgtttgtcga tagctctact ttccaatatt tttatactat      1860
     gttaaaataa cccttttttg attatacagg tgtgataccc attaccacaa ccatggatgc      1920
     tgctccagag cacctcctca acatcattcg gtgcaaatgc actacaggtt gtagcacggg      1980
     ggcctgcagc tgcagacaag ctggactcat gtgctctgcc atctgcaaga attgtgttgg      2040
     tactgcatgt gaaaatacac cagaagcaga cttcgatgaa gaagacactg acgctaaatg      2100
     cgaagaacag gaaaacttct tcgacgaaat tgtagcgcag gaggaagaaa acaatgacga      2160
     taccgacgac ggcgtgccat cagtgcccaa gaggtcaagg cacacagata cctgaagttc      2220
     atttttgagt gactgagttt cagtgtatta ggttaatcac attttattct tctgatgttt      2280
     tattgttagg ttaatcatgc ttcatgtaat cagattaatg tattaatcat agttactttc      2340
     tatatttcta tgtacccctt tgttgtatgt ttttgtacat aaatattctt cattactatt      2400
     tttaaccact acacagaatt ttccatgcta gccctttgaa atcggaagga cattctcatc      2460
     aggaatctgg tcagatttga ctataaagca gactctcatg tgagtcatgt aaagttatgg      2520
     cggactcatt cctgatcgtc gtatcagtga tagtgtatta tctcgatgga ttgtttctac      2580
     gtgtccaaat tcatgggcac caaacaaaag ttacacagaa atgtagacaa ataaaagtta      2640
     taaggcaaaa aattgagttt tggagctatt tttggtaatt ttagaaaatt actgtatttt      2700
     tgaacatctg tatctcagtc attagtgggt caaaaacact tttgaccagt gaaatatgta      2760
     ggaaatttta tgctcttcaa ctttgttccg aggtatgttt cgcgaaaacg catggtttag      2820
     aagttataag cgaaatagtg aaaaaaggcc aaaaatttcg aggtttttcg gcccctgcaa      2880
     agttagcaca gggtcctcga ggtcgaaaac tcagattcta ctccacagag tacctacaca      2940
     caacatacta aaatttcatt aagttcggaa tactttccag gtaaaagtac ctgactgctg      3000
     gacta                                                                  3005
//
ID   Academ-5_LMi repbase;    DNA;    INV; 3544 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3544
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2946-2946 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(676..1356,1296..1748,1660..2406)
FT                 /product="Academ-5_LMi_1p"
FT                 /translation="IVAECVLKPCKDKGGELITLSRKAVDKIIQCSEIRKD
FT                 GVKDKFLENESLQVHNKCRQXYTLRPKSPQHDKEPPSKIPRESFDFKNLCF
FT                 LCGRKCVDVSKCRNPAXEKWSSVQKLEPIESIRTEANNRHDKWGDEVTVRL
FT                 SQVIDLVSSDGRYHWHCYQTFRKPGSSQPEKGAATTKGGSSADAKREDAFE
FT                 KLCDYLEENDECQYAFEELQTMFLQLVPKLSHILTNIRITNYVPSTGPEVE
FT                 PYTDKHMKRKLIQRYGNSLNFTELPGKRSVICFSGATSNILTDNWYRNRNT
FT                 DDAQEELRVVKTAAAIIRREIKSRSYDYSQFPTIVEICRGGAELVPELLSV
FT                 LITEIIQPTSKRQTPEKIQWTKQITERKKLQYVTVYSLLLKDRHPRKFNGR
FT                 NKLLKGKNFNMSQYNQRCTSKSFLSPVQLGTGVSLHRKFGSKFLIDILCNL
FT                 GVCVPYKEVLKYERSVTSQESTRIENGYVQFVFDNADYNVHTVDGHNTFHV
FT                 MGGIACITPKTALQVEDNVLRKIITAQAVEKRGLFDLQTYRAPSTSGYSKI
FT                 VATNMASLKIKPLSYEHGRTLNLFWLSGTWLEGPEECKPGWSGCMEMLYAA
FT                 REFQTSAVVPLPFINLAPSNPSTIYTALL"
XX
SQ   Sequence 3544 BP; 1111 A; 680 C; 762 G; 985 T; 6 other;
     tagtacggtg caattagctc aaaaaacggc ctaacccaga catccaaagt aaaagtttcc        60
     ctccagccca aactgttcta tacagcccac atattgtttg gtaaaaagtt acaccatttt       120
     gagcgtcggg tttggggggg aggggaggga gaagttagaa aattagcagt tttttcagtt       180
     tttcttaaat atttagaaaa ctatgcggtt tagcgcgaaa gtgccaaata caaaaataat       240
     ctcattaaat tgcgaacaaa aattgttcag tacataatct tgctaaagtg aacggttaca       300
     gagttacgga gggtgaaaga gtagaaattt ttggattttt ttggaaaaaa tgaaattgta       360
     cagaaataac taaacagttt tattaaaaag taatattctc aacgattgta gtccgaaaga       420
     ggctaagagg cascacagag ggtcaaagca taaaatactg ggaacgagag ccggcttagt       480
     agaagcgcgg ccgagcgtag ggcctgcagc cgggcctgca ccctgcctgt catccactgt       540
     ctttccctca gtcgtagtgg gagacccgtt gagtgcgttt gtgagttatt tctattaaag       600
     ttctgctgtc agtttttaat cgttcgtctt tggaatactg kgcgaactat gtgataatca       660
     ctggtaggtg tgtgaattgt ggcggagtgt gtgctgaagc cttgtaagga caagggtggt       720
     gagctaatta ctctgagtag gaaggcggtg gacaaaataa ttcagtgcag tgaaattcgt       780
     aaagatggtg ttaaagacaa gttcctggag aatgaatcgc ttcaggtaca taataagtgt       840
     cgacaaastt atacgctacg tccaaagtca cctcaacatg acaaggaacc tccatcaaag       900
     attccccgtg aatcatttga ttttaaaaac ttatgttttc tttgtggtcg caagtgtgta       960
     gatgtatcta aatgcaggaa cccagctsaa gaaaagtgga gctcagtaca gaaacttgaa      1020
     ccgattgaaa gcatccgaac ggaagcaaat aacaggcacg acaagtgggg agatgaggta      1080
     actgtgaggc tctctcaggt catagacctc gtcagttctg atgggagata ccactggcac      1140
     tgttaccaga catttcgaaa gccaggatca tcacagcccg agaaaggagc ggcaacaacc      1200
     aaaggtgggt caagcgctga tgccaaaagg gaagacgctt ttgaaaagct gtgtgattat      1260
     ttggaagaaa atgatgaatg tcagtacgcw tttgaagaat tacaaactat gttccttcaa      1320
     ctggtcccga agttgagcca tatactgaca aacatatgaa aagaaaactt atccagcgct      1380
     atggtaatag cttgaatttt acagaattac cagggaaaag aagtgtgatt tgtttctcag      1440
     gagcaactag taatatttta acagacaact ggtatagaaa tcggaacact gatgacgctc      1500
     aggaggaact gagagtggtc aaaactgcag cagctattat tcgacgtgag ataaagtcsa      1560
     gaagctacga ctattctcag tttccaacaa ttgtagaaat ttgtagagga ggagctgaac      1620
     tggtacctga actcctcagt gtcttgataa ctgaaataat acagcctact tctaaaagac      1680
     agacacccga gaaaattcaa tggacgaaac aaattactga aaggaaaaaa cttcaatatg      1740
     tcacagtata atcagcgctg cacgtccaag tcatttttgt cccctgtcca acttggaacg      1800
     ggtgtttcat tgcacagaaa atttggctca aagttcctga tcgacatcct gtgcaatttg      1860
     ggtgtttgtg taccttacaa ggaagtttta aaatatgaga gatcggtcac ttcccaagag      1920
     agcacaagaa ttgagaacgg atacgtgcaa tttgttttcg ataatgcaga ctacaatgtc      1980
     cacactgtgg atggccataa cacgtttcat gtcatgggcg gaattgcttg cataacacct      2040
     aaaaccgccc ttcaggtaga ggacaatgta cttcgaaaga ttattactgc tcaagctgtt      2100
     gaaaaacgag gcctgtttga tttgcaaact tacagagccc caagtacatc tggctattcc      2160
     aaaatagttg ctacaaacat ggcttccctg aaaataaaac cactatcata tgaacatggc      2220
     cgaacactta atttgttttg gttgagtggt acctggttgg aaggcccaga agaatgtaaa      2280
     cctggttgga gtggctgcat ggaaatgttg tatgctgcga gagagttcca aacttccgct      2340
     gtagttcctc ttccattcat caacttggct ccttcaaatc cgtcaacaat ttatacagct      2400
     cttctttaag ctgccacaaa aggcaccagc aatggacaaa gcacaacaac ggtgactttg      2460
     atcagccttt gtacgccaag gctcgtgaaa tagtagcagc agcacctgat ggcagcccat      2520
     tgaagtcact cttcattcga ctaggagttt tcacttgtta atgtcccttt tgtcagcgat      2580
     tggatacatc atggcaggaa gtggcctgga ggagttgtac agtactgttt atgccaaaaa      2640
     cagcttcaac aaatgatgaa tgggaaagct tactccaggg tcattcgtgc cctcttcctt      2700
     gtcgaagagg cactcattac tgtatttttg aaaactagtg aaactctcat tagtgtggat      2760
     aaagatgagc ttaatttgtc tattcagctt taagcgggta atgcatcttc tgaagagatt      2820
     accagtcagc tgcagtgaat ttgaagagga ctgatatctc acatttattt aaagctattt      2880
     tctaaagaaa aacctccaaa agcttcagtt ttaatatatt acaattaaaa tgatatatat      2940
     cataattatt acacagataa tatttttata atttaaatta tttatgttgg aaagatattc      3000
     attcttaatg cggcatgttc aggtgggttt ctccgtccac aggtttatag gcctaggcct      3060
     gtggaagcct cttttccctt aaaaagagcg ccccttgaga aggtggtgag gtgtcgttcc      3120
     ttcaagggct tatcactaac aaccaccggc cacaaaacgc aatttgcctt tacaaaacgc      3180
     aatctgtatt aaaaaaaggt ttccttagtg attttccaga aaatctgaaa aaatgaaaaa      3240
     tttactttta caacctctgt aactctggaa ccgttcactt tagcaagatt acgcacggac      3300
     catttttgtt ggaatttaat gtagattatt ttttatggca cttttcgcgc taaaccgcat      3360
     agttctctaa atattaagaa aaactgaaaa actgctaatt tctaactttt cccccctccc      3420
     cccaaacccg acgctcaaaa tgtgtaactt tttaccaaac aatatgtgga cttatagaac      3480
     aatttggaac tggagggaaa cttttacttt ggatgtccgg gtttggtcta attgcaccgt      3540
     acta                                                                   3544
//
ID   Academ-6_LMi repbase;    DNA;    INV; 3600 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3600
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2947-2947 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(611..1081,1203..2459,2413..2730)
FT                 /product="Academ-6_LMi_1p"
FT                 /translation="MIINALYINRCNLCVSAYQYICESRYCCKNNESLSVC
FT                 GYWSAIKGLGLSFVARPSLRVVTQRVFCPPSQTSCLRGLPHYTQSALRNGR
FT                 IRICEERFKQKSSKSRSWWCFKYFLFTICRSYPRRMFVSGSSGSAWRGNSD
FT                 SEKTRNLDADKSESETWASAQPSSSRGERLRSASGSRRHIIGDFCFLCGEK
FT                 FSKEYFEKQIKLPKYLQDELHQVETLEVKESIVEKARQAGEWGQQILQRLS
FT                 CISELVAAEGKYHKHCYVKLHSLSRSTGAGGKRGRPEHPLLIEGMERIYAY
FT                 LAETREENQFSISDLIAENFTCDYKPAVASVQAHLKRRYGEKIIFAQVGPY
FT                 HSPVLMFTDIGQNILYEKWYNQRLSDPAEERLRVVKAAAEIILQDIRSQTF
FT                 DTTQYPPSDAFLKDAEASVPDSLQLLLEQIVLKNKRPSLEQWKKKCIGFAH
FT                 AIMAATRPKSFLSSIQISFGTYLYRKFGSKHLVELCHSMGISCTYTEAMRF
FT                 ESSAILRGEVTQLVDKGAFMXFVFDNADVNVNTIDGENTFHEMGGIMIMTP
FT                 HSSVHPDINIPRLKSVSAESIRFTHCHTHSLFLQSLSGSHTATHIKHSSIR
FT                 KKSGLSAISINEVKIAEDILPKSPDLLWLFGKATNMPGIPGWNGFMEQVTE
FT                 DLPYKRSKIVYLPFIHAPPTDYDTVLTSLLEAS"
XX
SQ   Sequence 3600 BP; 1100 A; 710 C; 750 G; 1039 T; 1 other;
     taggccagtc gtcaggtatg caaaaaaatg gccttaggtc caaaaaaatt gcaggaagct        60
     gaatttttgg tatgttgtta ggacatatta gagtagtatt aaaccaagtt tgcagcttcg       120
     aaatccttta gcttaacttt taagagccaa aaaacctcga aattttcgga cttttttctg       180
     gttttggctt ataactcgtg aagggtggtt ttttgacgaa aagtcactca cacctctatt       240
     aatgtagata aaatattcta aaatttaagc ccaaccgcag ctctgtaagt ccaatagttc       300
     ccgagatatt ggacttcaaa aattgactta tttctccaaa aagttcaaat ttccgatttt       360
     agtcatcttt cggctagaat attggctcta atgatcatcc cacggggaaa gtcatacaaa       420
     acaaagttat agagcagtta tttagcttta atctaagtac agaacgaagt ccataggccc       480
     aatagatttc tagttatcgt taaaaaacga aaagttggaa aaatcggagt attcaataaa       540
     ctgacccaga cgaattgcag tcctcttatc ctatatatgt taaagaaaaa ggaggaatta       600
     ctcattgacg atgattatta acgcattgta tataaatagg tgtaatttat gtgttagtgc       660
     ataccaatat atttgtgaaa gtaggtattg ctgtaaaaac aacgaaagcc tctccgtttg       720
     tgggtattgg tcagccatta agggactggg actttcgttc gtagcgaggc cctcactccg       780
     agtggtgacc cagcgggtgt tctgtcctcc ctcccaaact tcttgtctcc gaggtcttcc       840
     ccactacacc cagtctgccc ttagaaacgg ccgtattcgg atctgtgaag aacgtttcaa       900
     acaaaaatcg tctaaatctc gatcgtggtg gtgttttaag tactttcttt ttacaatatg       960
     tcggagctac ccccgtcgga tgtttgtttc ggggtcgtcg ggaagtgctt ggagagggaa      1020
     cagtgacagt gaaaaaacgc ggaatttaga cgctgataaa agtgagtcag aaacgtgggc      1080
     ttgaaaggaa catgaggttt ttgtgcagtt taaacgaagt gaccgtacat gacgcatgca      1140
     ggaagaggta cactgtggaa agtaatgtga aagcatctgt ccagcgagga ggagatgttt      1200
     gatctgctca accatcgtct tcgcgtgggg aaaggctgag aagtgcgtcg ggttcaaggc      1260
     gtcacatcat tggagatttt tgtttccttt gtggtgaaaa attctccaag gaatatttcg      1320
     agaagcagat aaaattgccc aaatatctac aggatgaact ccatcaagtg gaaacactgg      1380
     aagtgaaaga atcgattgtg gaaaaagcta gacaagctgg tgaatgggga caacagattc      1440
     ttcagcgtct ttcatgtata agtgaacttg ttgctgctga gggtaagtac cacaaacatt      1500
     gctacgtaaa attgcactcc ttgtcgcgat ctactggtgc aggaggtaaa cgagggcgtc      1560
     ctgaacatcc cctccttatc gaaggtatgg agcgtatata tgcatacctt gcagaaacaa      1620
     gagaggaaaa ccaattttcc ataagtgact tgattgcaga gaacttcaca tgtgattaca      1680
     aaccagcagt tgcaagtgtt caagctcatc taaaaaggcg atatggagaa aaaattattt      1740
     ttgcgcaggt tggtccgtat cacagcccag tcttgatgtt cacagacatt ggacaaaaca      1800
     ttctttatga aaagtggtac aatcaaagac ttagcgatcc tgctgaagag cggcttagag      1860
     ttgtcaaagc tgcagcagag attatcctgc aagacattcg ttcccaaaca tttgacacta      1920
     ctcaatatcc cccgtcagat gcctttttaa aagacgcaga ggcatcagtt cctgattctc      1980
     tgcaactgtt gcttgaacag attgtcctga aaaacaaacg tccttctctt gaacagtgga      2040
     aaaagaagtg cataggattt gctcatgcaa tcatggctgc aacgaggccc aaatctttcc      2100
     tatcctcaat tcaaataagc tttggaacct atttgtatag aaaatttgga tcaaagcacc      2160
     ttgttgaact ttgccacagt atgggaattt cttgtacata tacggaggct atgcgttttg      2220
     aaagttccgc tatcctccgt ggagaagtga cccaactagt tgacaaagga gcttttatgc      2280
     aktttgtgtt cgacaatgca gatgtgaacg ttaacacaat tgatggagaa aatacgttcc      2340
     atgaaatggg tggtataatg atcatgaccc ctcactcatc cgttcaccca gacataaaca      2400
     taccacgttt gaagtctgtt tctgcagagt ctatcaggtt cacacactgc cacacacatt      2460
     aaacattctt ctattagaaa gaaatctggc ttgtcagcca tttcaattaa cgaagtgaaa      2520
     atcgctgaag acattttgcc aaaatcccca gacctgctgt ggttgtttgg aaaagcaact      2580
     aacatgccag gcatcccagg atggaatgga ttcatggagc aagtgacaga agatcttcct      2640
     tacaaacgtt caaagattgt atatctccct tttatccatg ctcccccaac cgactacgac      2700
     actgttttaa catcactttt ggaagccagt taaagaacaa gcatttacgg tcaggaaaca      2760
     tgttttgtga cctacgacca accactgtac ttgaaagccc gagacattgt ggagagccac      2820
     cagcatcctc agctcgtcaa catagggtga ggcttggagg ttttcaccac ctcatgtcat      2880
     tcatgggggc cgtcggtgcc ataatggcag gaagtggact caaggaactt ctctgttcaa      2940
     tatttgctga aaacagtgtt gaaaaaatcc tatttatata caatgcgtta ataatcatcg      3000
     tcaatgagta attcctcctt tttctttaac atatatagga taagaggact gcaattcgtc      3060
     tgggtcagtt tattgaatac tccgattttt ccaacttttc gttttttaac gataactaga      3120
     aatctattgg gcctatggac ttcgttcagt acttagatta aagctaaata actgctctat      3180
     aactttgttt tgtatgactt tccccgtggg atgatcatta gagccaatat tctagccgaa      3240
     agatgactaa aatcgaaaat ttgaactttt tggagaaata agtcaatttt tgaagtccaa      3300
     tatctcggga actattggac ttacagagct gcggttgggc ttaaatttta gaatatttta      3360
     tctacattaa tagaggtgtg agtgactttt cgtcaaaaaa ccacccttca cgagttataa      3420
     gccaaaacca gaaaaaagtc cgaaaatttc gaggtttttt ggctcttaaa agttaagcta      3480
     aaggatttcg aagctgcaaa cttggtttaa tactactcta atatgtccta acaacatacc      3540
     aaaaattcag cttcctgcaa tttttttgga cctaagcata cctttttgac gactggccta      3600
//
ID   Academ-7_LMi repbase;    DNA;    INV; 3147 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3147
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2948-2948 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(795..1235,1189..1380,1316..1537,1541..1678,
FT                 1682..1897,1901..2194,2169..2372)
FT                 /product="Academ-7_LMi_1p"
FT                 /translation="MSSRSSVPNARERVNDGEAPRRTSKACHWLGGGMECS
FT                 HSLLTSVHFKSSPTAEKVCVSVLCVSFSRYFLFIYENVDCVVRAMATRCFV
FT                 CDETIDGPGVSTVTKKGILSLIKARIERGDSNGSSLEGLDILLIHTECRKN
FT                 YIRLQWLCFILNVEKITSGCNGYVRFLKTNCLGRGCTVVFNGYSDISERIK
FT                 AAEQSTISAQEVWGNECQSRNKQLNSRRYRLRRCGEMNVSLETKITVKQED
FT                 FLSKFNNKNQLINLLMMQLQKNGINGLQASGDADVDIVETAINRHNSSIAI
FT                 IGEDVDLAVLLTAKSPTDRNILLVEPGRGKVKTCLYSSQLHQELKMKDNAH
FT                 LLFLHAFTGCDTTSVAYCKSKVGFVKMHQKSKIIQHAAEIFANSSSSADSV
FT                 ETVGITSTLWYGAPATTESLIEFRYKSSIKAAGNMKPNLSTLPPAEGAVKQ
FT                 HAFRTYHQVRLWLGEEPKGGAPNWGWNGQLVPKLSELDAAPDEILKMIFLS
FT                 MHERMFFCRCTKGCDSGRCGCRKALLHCSVTCLNCKGNCNNGVGILIQDED
FT                 DDSDIETLPISLDDVSTTDEDE"
XX
SQ   Sequence 3147 BP; 973 A; 594 C; 660 G; 920 T; 0 other;
     tagtccagtc aatgaatgca ttctagagtg catggaatat gcgagaattt ttgacttcag        60
     gactttgtta gggatagtta ggaggtgaac atactaaaag tccccgcccc tggggggtga       120
     gctaaagcgg ggaggggggt ggaaaggtac cattttttgg ttttccgctt atatctcgaa       180
     aacggtcggc tttaggaaaa aattgttcca aataaaaatg aaagataatt gaatttgcta       240
     taaaattgtt tctatacata tacgtcgaat tcccaacggt tttcgagata tacgttattg       300
     aaaatcgaca atttcggaaa aaatcatctt tacctcacta attttgtcaa acatttactt       360
     ctagtgactc actcgatcgt ttcacagaaa atttgtctga aagaaagttg tagagcatta       420
     aatttccttc aatttgatat gcacatttgc taccttatct tcagccaatc agaagttaca       480
     tcatttataa gatgtgcgct cagtttcgat gtccctccat aaatgagtgt tttgaggggc       540
     tgtgacgttt ttaccttatg aaacgtgcta gcatggtaaa taacaacagt ttaacaatga       600
     caagaaggta cttgcaattg aaacagaaca cctttttata aatgtagctt ttctgataat       660
     attatgaatc atacaattaa agtatttaca agcactgaaa gtgattcagg atgaaaaaaa       720
     ttgcattcaa cgcaatatct tcgtttttct gaggcggagg agttgaggct catttattgt       780
     cgcctgcagt ggatatgtcg tcaaggtcgt cagtacctaa cgcccgggag agggttaacg       840
     atggggaagc cccacgacga acatcgaagg cctgtcactg gctggggggt ggaatggagt       900
     gttctcactc acttcttact tcagttcact tcaaaagttc gccaaccgca gagaaagttt       960
     gtgtgtcggt attgtgtgtc agcttttcga gatatttttt atttatttat gaaaatgttg      1020
     actgtgtagt gcgcgcaatg gctactcggt gttttgtatg tgatgaaaca atagatggac      1080
     caggtgtttc cacagtgaca aaaaaaggaa tactatcact catcaaagct agaatagaaa      1140
     ggggagatag caatggctca tctttagaag gtttggacat ccttctgatt catactgaat      1200
     gtcgaaaaaa ttacatcagg ttgcaatggt tatgttagat ttttgaagac caattgtctt      1260
     gggagaggtt gtacagtggt ttttaatggg tactctgaca tatcagagag gataaaagca      1320
     gctgaacagt cgacgatatc ggctcaggag gtgtggggaa atgaatgtca gtctagaaac      1380
     taaaattaca gtgaagcaag aggatttcct ctccaaattt aacaataaga atcagctgat      1440
     aaacctgttg atgatgcaac tacagaaaaa tggaataaat ggccttcaag cttcaggtga      1500
     tgctgacgtt gatattgtgg agacagctat caacagataa cataattcct cgattgccat      1560
     tattggagag gatgtcgact tagctgttct cttaacagca aaatctccaa ctgatcgtaa      1620
     cattctgctt gtagaaccag gaagaggaaa ggttaagacg tgtttatatt cttcacaata      1680
     gctgcatcag gagttgaaaa tgaaggacaa tgcccatttg ttattcttac atgcatttac      1740
     aggctgtgac acaacatccg tagcgtattg caagagtaaa gtggggtttg tcaaaatgca      1800
     ccagaagtcc aaaatcatac aacatgctgc tgagatattt gccaacagtt cttcttccgc      1860
     cgactccgtt gagacagtgg gaatcacgag tactctataa tggtatggag ctccagccac      1920
     cacagaatcc ctcatcgagt tccgctacaa atcatctata aaagcagctg ggaacatgaa      1980
     gcctaatctc tcaactctcc ctccagctga aggagctgtt aagcagcatg cattccgaac      2040
     ttaccaccaa gtacgccttt ggttaggaga ggaacctaaa ggtggagcgc cgaattgggg      2100
     ttggaatggc caactagttc cgaaactctc agagttagat gctgcccctg acgaaatctt      2160
     gaagatgatt tttttgtcga tgcacgaaag gatgtgacag tggcagatgt ggttgcagaa      2220
     aagcgttgtt acactgctct gttacatgcc tgaactgcaa gggcaactgc aacaacggag      2280
     tcggaatatt aattcaggat gaagatgacg acagtgacat cgagactcta ccaatctcgt      2340
     tggacgacgt ctccactact gacgaagatg aatgaacctt gaccattcct cctcagaaaa      2400
     acgaagatgt tgctttgaat gcacttattt ttcattctga atcactatca gtgtttctaa      2460
     aaactttcat tgtatgattc ataatattgt aataaaagct acaattatga aaagatttca      2520
     attgcaagta ccttcttgtc attgttaaac tgttgttatt taccatgcta gcacgtttca      2580
     taaggtaaaa acgttacagc ccctcaaaac actcatttat ggagggacat cgaaactgag      2640
     cgcacatctt ataaatgatg taacttctga ttggctgaag ataaggtagc aaatgtgcac      2700
     atcaaattga aggaaattta atgctctaca actttctttc agacaaattt tctgtgaaac      2760
     gatcgagtga gtcactagaa gtaaatgttt gacaaaatta gtgaggtaaa gatgattttt      2820
     tccgaaattg tcgattttca ataacgtata tctcgaaaac cgttgggaat tcgacgtata      2880
     tgtatagaaa caattttata gcaaattcaa ttatctttca tttttatttg gaacaatttt      2940
     ttcctaaagc cgaccgtttt cgagatataa gcggaaaacc aaaaaatggt acctttccac      3000
     cccctccccg ctttagctca ccccccaggg gcggggactt ttagtatgtt cacctcctaa      3060
     ctatccctaa caaagtcctg aagtcaaaaa ttctcgcata ttccatgcac tctacacccc      3120
     tattttgagc actcattgac tggacta                                          3147
//
ID   Academ-8_LMi repbase;    DNA;    INV; 2952 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2952
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2949-2949 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(901..936,897..1151,1109..1348,1501..1617,
FT                 1629..1937,1888..2109,2091..2219)
FT                 /product="Academ-8_LMi_1p"
FT                 /translation="MRKTTKATYMTKWHEENHESDIYDKMRPIDIDLDESN
FT                 VTYIIDGGFLLHRVIWSKDDTFTVVLDKYIKYLQTHYGSRMVVIFDGYSDT
FT                 VEILKQWNNRILGYSRNTKAMEQLRRILSESYEVALRKQRLCQSAKRNFYQ
FT                 IDLIKKKLIDLLVEKLKTVISLQNKPEMMLMFVNRNRYTYPRCKKHLLLHA
FT                 LSGCDTTLRCSERQKNFCKILEKLPDLKYFNKKIALRKRYLKWSTYLVGIY
FT                 NAPKSEDTQFVKSTKLNKPGNYQICHQQAAAHQHINRAYYQVQTWLGNYID
FT                 PRNGVGCCRMNIWSQYQQYYHLHQTSSTFGANTNNITTCTRRAPEYNSCNC
FT                 KNGCGSRCGCRKSGMQCSSACGQCRASLPQCHHTRTIDEESAYDPESWKVP
FT                 RILEGLETTIVDYEDDDNEMDVFERMKTTMMIKKMKIEPMYD"
XX
SQ   Sequence 2952 BP; 1015 A; 491 C; 532 G; 914 T; 0 other;
     tagtccagtc aaattagggt ttcacctcgg aatgagaggt aacaagctga atatttgcat        60
     gagcctttgt tttggcattc taaatgatgt gtcaaaagtc tcataaaatc tcgtgtccgc       120
     gtcttaagtt attaaaggtc aaaggtcacg aaaatcagtt tttcgcaaat atctcgcttc       180
     ctatgcgtta aatggtattt gcatctcaga taaaagttgt agagcatgaa attctctaca       240
     atttttgttt taaacatttt ttgtgcaatt catcgttttt tagatagagc gcggagagcg       300
     cacaggcaca gcgctcagac atataagacg taatacgagt cagctgcgaa tcacagtcaa       360
     tggtacgttg aataaaaaat tataattgta aataaaattt cattatttac gaattaatac       420
     caattttaat aatacttatt tcttcaatgt ctgaattcct actttaagtg tatttaaatt       480
     gtgagtgaga aattttgtac atattttgtt cttcgaacaa cacgttgacg cggacgagta       540
     aaaagagata ataagatgta gaaattgatg gttgttcata acccctttcc atcaaacagt       600
     tggtatcttt agctagtgga atcgtggaga tgaccaaata attgtcacag agcctatgaa       660
     attggattaa aatcaatggt taaataactg gttaacttta acgaatgaaa tttaaagtgg       720
     atagggtttt accccttcag ttttaacaaa tctgtcacga ttaacaattg taaagttgct       780
     gtagacccgt tactactctt ccagagaata gctgcaggca aaaagtttga aggtaatctt       840
     caagaatatc ttaaatacga actaagtccg tatccaacat ctttatttga taataatggc       900
     atgaggaaaa ccacgaaagc gacatatatg acaaaatgag acctatcgat atcgatcttg       960
     atgaaagtaa tgtaacatat attatcgatg gtggatttct tctgcatcgc gtcatatgga      1020
     gcaaagacga tactttcacc gttgttttag ataaatatat aaagtattta caaacacatt      1080
     atggctcaag aatggttgtt atatttgacg gatactcgga tacagtagaa atactaaagc      1140
     aatggaacaa ctaagaagaa ttctttcaga atcgtatgaa gttgctttga ggaaacaacg      1200
     attgtgccaa tcagccaaga gaaattttta tcaaatcgat ctaataaaaa aaaagctaat      1260
     tgacttgctt gttgagaaat taaaaactgt tatatcacta caaaacaagc cagagatgat      1320
     gctgatgttt gttaatcgaa acaggtattg agaatcagag caccagagga ctgccgtcat      1380
     cgtagaagat attgacttgc ttgtcatttt aattggacgt ctcaatgcat cacaaaattt      1440
     tctttaaaaa agttggtaaa ggcaatgtta aaaccaaata tactcctcca aaagttttga      1500
     acatatcccc gttgtaaaaa acacttactt ttgcacgcat tgagtggctg tgacacgact      1560
     ctgcgttgtt cagaaaggca aaaaaacttt tgtaaaatat tggagaaact tccagattga      1620
     tcagctagct caagtatttc aacaagaaaa ttgccctgcg caaacgttac ttaaaatgga      1680
     gtacgtatct tgttggaata tataacgctc caaaatctga agacacgcaa tttgttaaat      1740
     cgacaaaact taataaacct ggcaactatc aaatctgcca ccaacaggca gcagctcatc      1800
     aacatatcaa tcgtgcttac taccaagtac aaacgtggtt aggaaactat atagacccca      1860
     ggaatggggt tgggtgctgc agaatgaaca tttggagcca ataccaacaa tattaccacc      1920
     tgcaccagac gagctcctga atacaattct tgcaactgca aaaatggttg tggttcgcgc      1980
     tgcgggtgca ggaaatcggg gatgcaatgt tcttcagctt gtggccagtg tagggcaagc      2040
     ttgcctcaat gtcatcacac cagaacgatc gatgaagaaa gtgcatatga ccccgaatct      2100
     tggaaggttt agagacgacg atcgtcgatt acgaggatga tgataatgaa atggacgttt      2160
     tcgagcggat gaagacgacg atgatgatca agaagatgaa aattgagcct atgtatgatt      2220
     aataattaaa gtgaataaaa atcctcctca cgtttgaact tctaattgta ataaattaat      2280
     catacatgac taccaaataa agatttacat aaaacgtatt tcctcgtttt ttatttaata      2340
     tatttttgct tcaaatataa taagtcttaa ttatgttaat tttattcttt ctacatgaaa      2400
     cataattaag attattagaa tatataaaat atacttgaag tatttggctt cataacttta      2460
     taatttcatg aaataagtaa atattattaa acaatctttt tgatttatga ataatattat      2520
     gaaatattga acataattca taaagaatga aggtttgtta ttgtaattgt tgaatattta      2580
     ttaactttaa acaacctacc atgactggat tcgctgactc gattacgtct tatatgtctg      2640
     agcgctgtga cctgtgcctc tccgcgccta tctagaaacg atgaattgca gtttaaaaca      2700
     aaaattgtag agaatttcat gctctacaac ttttatcgag atgcaaatac catttaacgc      2760
     ataggaagcg agatatttgc gaaaaactga ttttcgtgac ctttgacctt taatatctta      2820
     agacgcggac acgagatttt atgagacttt tgacacatca tttagaatgc caaaacaaag      2880
     gtttatgcaa atattcagct tgttacctct cattccgagg ttgcgccttt tttcgcttat      2940
     ttgactggac ta                                                          2952
//
ID   Academ-9N1_LMi repbase;    DNA;    INV; 3039 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 19.11, Created)
DT   16-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Academ-9N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3039
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2884-2884 (2014).
XX
DR   [1] (Consensus)
XX
CC   >82% identical to consensus.
XX
SQ   Sequence 3039 BP; 895 A; 606 C; 641 G; 897 T; 0 other;
     tagtccagtc aacgaaggcc aaaaaatagc gaataggggg aaaaaatcgt gtagtcacaa        60
     atttttgtac agtggtaggg aagaccgtca tgaatgacat actaaaagtc ccgacctctg       120
     gggtgtgagc tcgagcgtgg gtgggcgttt aaaggtacac tttttatgtt tttcttaaat       180
     aactcaaaaa ctgttatctc tagtgaaaag tacaacagta caaaattaaa ctgcataaaa       240
     tttactacaa gaaagctcct cttcataatt tctctaggat caatattttg cgagatacgg       300
     gagaagcaaa attagcaaat tcttaaaaac cgaattttta tgctataaag ttaaaatgta       360
     aggtcgactg agtgaatgtc atgcagtctt aggggataca ttgtgcgctt gtggtgtggt       420
     ataagggaag gggagggggc tggacggctg agcgtgaggt ggcaggtagg cgactgaatg       480
     tggccgagcg cctccctctg ctgtgcgaac cccgcctgac aagcagaccc aacagcctga       540
     aagcatttct gtgtcagctt cagttctctc cagtgagtgt gcggaagatc tttatactgt       600
     ttgtgcttac ataataattt attttgagtt tattacgtga gtacttgttt ccagttagtg       660
     agtgattttc ttgtttaagg catctgtgaa caatggctga gaagtgttta gtttgtgaat       720
     gtgatgttgt cagtgacatt tgtaacactg gggaaaaagg aattagtgga ttggttcatg       780
     caagtaattt aagaaaagat gggaaagctc aaggttttct gaacaagaaa cacggtgttg       840
     ttcataagtc ttgcaggaaa gaatacacaa gagcacattc aattaaaaaa cttcagagcg       900
     ccactctttc agagcaacag ccttcaactt ctcgtgattc cccacatttg cgttcggctg       960
     aagtgaaatt tgtttttaaa tctgtttgtt ttgtgcggaa gctatagacg aagtgtttta      1020
     taacaaacaa aagaaaaagc ccattgattt gcgtcggaaa gtttacaatg ttcgatcctt      1080
     cacctacgac aattcaatta cgatctgtgc acaggagagg aaagatgagt gggggagaca      1140
     ccatctaaga cgtatccgtt cagtgatgga tctgcatgct gcagatactg tatatcatga      1200
     ggactgctgt aaaagttctt tataacctct ggacctacgt caagaaaaag agggcgtccg      1260
     ggatatttct gcagcaatgg aggagatatt taagcactca ggagagaatg agagataggt      1320
     atggggaccg aatagttttc agcacaattc agaaaagtgt tgtgtgcttt tgtagagcag      1380
     gtgaaaaagt tttgaatgat ttgtggtatt cttcagatgc aaagagaaca ggcagaggga      1440
     gaatgtaatg ctgacaataa tctggaaata ttgaatcaat ggcatacgac aattctgcat      1500
     ttccatcttg tgatgaattc gcacgggagc tgaagaattg gtaccttgtt ccctcgtgcg      1560
     ttcattgatt gcattgcagc gaaaaaaggg caaaacataa aattgaaaag aactgacatc      1620
     catatcacat gctctcattg ctgccattcg cctttatatg gggtgctctt cctgacactt      1680
     gttccaacaa ctcgtccacg gagaactggc agtcgtcatt tacttcgatg taattaaata      1740
     tctcctccat tgctgcagaa atatcttcat cttccggacg ccctcttttt cttgacgtag      1800
     gtccagaggt tataaagaac tttttacagc agtcctcatg atatacagta tctgcagcat      1860
     gcagatccat cactgaatgg atacgtctta gatggtgtct gcccccactc atctttcctc      1920
     tcctgtgcac agatcgtaat tgaattgttg taggtgaagg atcgaacatt gtaaactttc      1980
     cgacgcaaat caatgggctt tttcttttgt ttgttataaa acacttcgtc tatagcttcc      2040
     gcacaaaaca aacagattta aaaacaaatt ttacttcagc tgaacccaaa tgtggggaat      2100
     cacgagaagt tgaaggctgt tgctctgaaa gagtggcgct ctgaagcttt ttaattgaat      2160
     gtgctcttgt gtattctttc ctgcaagact tatgaacaac accgtgtttc ttgttcagaa      2220
     aaccttgagc tttcccatct tttcttaaat tacttgcatg aaccaatcca ctaattccct      2280
     tttccccagt gtcacaaatg tcactgacaa catcacattc acaaactaaa cacttctcag      2340
     ccattgttca cagatgcctt aaacaagaaa atcactcact aactggaaac aagtactcac      2400
     gtaataaact caaaataaat tattatgtag cacaaacaga taaagatctt ccgcacactc      2460
     actggagaga actgaagctg acacagaaat gctttcggct gttgggtctg cttgtcaggc      2520
     ggggttcgca cagcagaggg aggcgctcgg ccacattcca gtcgcctacc tgccacctca      2580
     cggccagccg tccagccctt ataccacatc acaagcgcac aatgtatccc ctaagcttta      2640
     gatgtcgata gacattttta ttcgatcgca aactacttca gtcgacctta cattttattt      2700
     atagcataaa aattcagttt ttaagaattt gctattttgc ttctcccgta tctcgcaaaa      2760
     tattgatcct agagaaatta tgaagaggag cttttttgta gtaaatttta tgcagtttaa      2820
     ttttgtactg ttgtactttt tcgctagaga taacggtttt cgagttattt aaggaaaact      2880
     aaaaatgtac ctttaaacgc cacccacgct cgagctcaca ccccagaggt cgggactttt      2940
     agtatgtcgt tcatgacggt cttccctacc actgtacaaa aatttgtgaa actacactta      3000
     ttttcccccc ctatttttcg gtcttcgttg actggacta                             3039
//
ID   Academ-9_LMi repbase;    DNA;    INV; 3117 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   05-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Academ-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3117
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2950-2950 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(700..1023,1005..1175,1308..1718,1649..2509)
FT                 /product="Academ-9_LMi_1p"
FT                 /translation="MLTHLESVDIPQNALYDDSCWKCLFSTNTLTLNGIQV
FT                 LVTNRTTQYISAHRLAPVGGKLIVGHTVRLLRLISGEGPFPHHENCSLFNL
FT                 QTAFSVQFSYVSNENNFTVEKQLYCGVSLVVPTAFIRYVCTSYFLFMLPFN
FT                 GLDRLTNQTFHVIITSSLVAVYMMVRTMAEKCLICECDVVSDLCNVGGKGI
FT                 RGLLNASYLRKDGKAEGFRNKTSGVVHASCRKEYTRGDSIKRFLRESLSEE
FT                 QPSTSAGVKRLRSAEAKFHFKTNCLFCAEAIDDEFLDKQKKKKKGGERFTV
FT                 FDPSVTIIQLTEEKKKRRRKVYSVRSFSYDNTIIVRAQERKDEWGDTIQRR
FT                 ICSVSDLHAADARYHEDCYKRFFIGSVPKSRQSGRPDDEEINASMEEIFNY
FT                 IEGNDDCQFTLDELLEQVSGTLPHIKTVKERLREKYGDTIVFSTIRTRKTV
FT                 VCFRSSGEKILNDAWYSSKCKDEQAERERIVKAAATIILEDVQSMAYDSSV
FT                 FPPCDKFCSEAEEMVPRSLQVFMDCISAKKRAKQKIQKKLASISHALIAAI
FT                 RPRSFISPILHAVAYCVTSYLRGVLWKGRYNLVKHPVVASAT"
XX
SQ   Sequence 3117 BP; 938 A; 592 C; 678 G; 909 T; 0 other;
     tagcccagtc aacgaagacc gaaaaatggc gattagggga aaaaattcgt gtagtcgcaa        60
     atttttgtac agtggtagcg gggagtgtca tgaacaacat actaaaaatc ctgacctgta       120
     gggtgtgagc gttggggtgg gggtgcgttt aaaggtcact ttttcacgtt tttcttaaat       180
     aactcgaaaa ccatggcttc tagtgaaaat atttcccagt acaaaattaa agtacgttaa       240
     atttcctaca gaaaaggtcc tattcatttt ttctctagga ccaatagttt tctcattaca       300
     aggggtgaaa aaatggcaat ttatgaaaac aatcttttaa tggtataaaa ttaatgttta       360
     ttgttaaatg aagtggatta agaccaaata ttaaaagcct atacctcatt taagtacagt       420
     agaacagtac tgagggataa attttgttct gaggatgtgc caggtggcag cgggagaggg       480
     tgggtttggg gggtgggggg ggggggtaga agatgaggga aagcatgacg ctggaatgat       540
     gtcaagcact tcccttattt gtgcttctgc aaaacgagga gcgagctagt gagtccccac       600
     tccatctacc ccattaggtc gcagaagcaa ctacagggtg tttcaccaag ttataccgac       660
     ccttccacag cacacctcgt aaataactgg tgacgcagta tgctgacaca cctggagagt       720
     gttgatattc cacaaaatgc gttgtacgat gacagttgtt ggaagtgttt attttccaca       780
     aatacattaa cactaaatgg aatacaggta ttagttacta atagaactac acagtacatc       840
     tctgcacatc gccttgcacc tgtaggtggg aaattgattg ttgggcatac tgtacgtttg       900
     ttgcggctta tttctgggga aggccccttc ccccaccatg agaactgctc gctcttcaac       960
     ttacagacag cattttctgt ccagttctct tatgtgagta atgaaaacaa ctttactgtg      1020
     gagtgagttt agtggttccc actgccttta taaggtatgt ttgtacctcg tactttttgt      1080
     ttatgctgcc atttaatggc ttagataggt taacgaatca aacgtttcat gtaataatta      1140
     cttcatcact tgttgcagtt tacatgatgg tgcgctaaga gcatgaaatg cgttactgat      1200
     aattaaatat tgcagcagag actgtcttat atttggaatt cattttatta agtgattact      1260
     tattttcagt aattaagagt gtctgtacat gaaatatgtt cctataaaca atggcggaaa      1320
     agtgtttgat ctgcgagtgt gatgttgtca gtgacctatg caatgttggt gggaaaggaa      1380
     tacgtggatt gctaaatgcc agttacttga gaaaagatgg gaaagctgaa ggtttcagga      1440
     acaaaacaag tggtgttgtt catgcatctt gcaggaaaga gtacaccaga ggtgactcaa      1500
     ttaaaagatt tttaagagaa tctctttcag aggaacagcc ttcaacgtcg gctggagtca      1560
     aacgattgcg ttcagctgaa gcgaaatttc attttaaaac taactgcctg ttttgtgcag      1620
     aagcaattga tgatgaattt cttgataaac agaagaaaaa aaaaaaaggc ggcgaaaggt      1680
     ttacagtgtt cgatccttca gttacgataa tacaattata gttcgtgcac aggagaggaa      1740
     ggatgaatgg ggagacacca tccaaagacg tatctgttct gttagtgatc tacacgctgc      1800
     agatgcaagg tatcacgagg attgctataa aagattcttt ataggctcag tgcctaaatc      1860
     tagacagagt ggacgccctg atgatgaaga aatcaatgcg tcaatggagg aaatattcaa      1920
     ttacatagag gggaatgatg actgccagtt caccttagac gagttgttgg agcaagtttc      1980
     tggaacattg cctcatataa agacagttaa ggagagactg agagaaaagt atggggacac      2040
     tattgttttt agtacaatcc gcaccaggaa aactgttgtg tgctttcgta gttcaggtga      2100
     aaaaatttta aatgacgctt ggtattcttc aaagtgcaaa gatgaacaag cagaacgaga      2160
     aagaattgta aaggcagctg ccactataat tttagaagat gttcagtcaa tggcgtatga      2220
     tagttctgtt tttccaccct gtgacaaatt ctgtagtgaa gctgaggaaa tggtacctcg      2280
     ttcactccaa gtcttcatgg actgcatatc ggcgaaaaaa agggcaaaac agaaaattca      2340
     aaagaagctg gcatctatat cccatgccct cattgctgcc attcgcccac gatcattcat      2400
     atcacctata ctacatgctg tcgcatactg cgtcaccagt tatttacgag gtgtgctgtg      2460
     gaagggtcgg tataacttgg tgaaacaccc tgtagttgct tctgcgacct aatggggtag      2520
     atggagtggg gactcactag ctcgctcctc gttttgcaga agcacaaata agggaagtgc      2580
     ttgacatcat tccagcgtca tgctttccct catcttctac ccccacctcc ccacccccca      2640
     aaacccgccc tctcccgctg ccacctggca catcctcaga acaaaattta tccctcagta      2700
     ctgttctact gtacttaaat gaggtatagg cttttaatat ttggtcttaa tccacttcat      2760
     ttaacaataa acattaattt tataccatta aaagattgtt ttcataaact gccatttttt      2820
     caccccttgt aatgagaaaa ctattggtcc tagagaaaaa atgaatagga ccttttctgt      2880
     aggaaattta acgtacttta attttgtact gggaaatatt ttcactagaa gccatggttt      2940
     tcgagttatt taagaaaaac gtgaaaaagt gacctttaaa cgcaccccca ccccaacgct      3000
     cacaccctac aggtcaggat ttttagtatg ttgttcatga cactccccgc taccactgta      3060
     caaaaatttg cgactacacg aattttttcc cctaattttc cttctttgac tgggcta         3117
//
ID   Academ-N1_LMi repbase;    DNA;    INV; 2967 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 19.11, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon, consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Nonautonomous;
KW   Academ-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2967
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2885-2885 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2967 BP; 893 A; 608 C; 605 G; 859 T; 2 other;
     agtccagtaa cctagtacat cgtaagttgc atcaaatggg ggtagtaggt ttcttttttt        60
     cttgtatggg atgtgactga gatgctagat ccaagttttc gacctcggca gacccccgga       120
     tcacttttga atatcccaaa aaccgctaaa ttttcgcact ttttcggttt ttttctcatt       180
     tttgccatga aggagamcgt tttcgacaaa cactgttcag tacattttta aactacatta       240
     aatttgctac aatttgagac caaaatgagc tcggaagaca caatagttcc tgagatacag       300
     ctttttaaat attgacaaat tttccagaat ttagaagttt atgctaattt tcatacgcaa       360
     ttatctttat atccacaata cccagtccga aatgaatcag caaagtaaac atttgtttat       420
     tttaatattt tgaaagggga ggacatgtag atagaggaat gactacacat aatgagatag       480
     gaagcgaatg atgatttatc tacacttgtt atacggaata tgatgagatt tttttaaaga       540
     aattcagtgc gttacaaaat cgttatgtcg taatgaagta gtatgaatga tgtttgtcgg       600
     aaaaactaaa atttcgggtg tgcagactgt ctcgtgtgcc ggagtcggcc tcaccmgaca       660
     gggcggtccc agcggcagta aaccagcggg caataaaaaa aagtctcctc ccccgtctac       720
     cctcctgtcc tcctgtccac cttttgcgtt cctttcaaaa ccgcatcctc tggtcagttg       780
     acagaagacg cctgaacggt aaagtgcggt tgattcagtt tttaatacgt gatgtgccgt       840
     tgacgttcga agttcccact atgtcggagc cggcgcgccg cgccgggcta gttgttgtag       900
     atggtggtca tctccttcac aaagtgatgt ggcccaagca ttcctcgtct gagttgttag       960
     ctgcatgata tatacatatc tcgacgcaca gtacggtcag aacaagctgt ggtgtttgat      1020
     ggttatccca cagagcctga ccaaacgagt gcaaaacgct ctgaacgtaa tcgccgatct      1080
     caaagacatt attctcctga gggctgttta ggaatcaaca actcctaaca ttcccgagaa      1140
     attttttgtc caatgacaaa aacaaattaa gattcatcca gctgttgaag ataaaatttg      1200
     aagccaaaaa cattgaggtt tttcaggtga agaagatgct gacacattaa tcatcaccac      1260
     aactatcaga aaggcctctg attttcaggt tgtgtttatt gtaggagagg acatagactt      1320
     gttagtcatc ctgactggtc tctggattcc cacgaaaggt accatatacc ttcagaagta      1380
     tggaagaggc aatacgccag atgtcttcta ctcaaccacc caacatttgc agagagtcac      1440
     ctgatccttt cactcatgcc ttcagtggct gtgattccac gtcgtgcctc tttggccagg      1500
     ggaaattgaa gttatttcag atactaatga aacatggaga ccttaaagag tcagctgcag      1560
     tttttttcta atccagcagc aacacctgct gaagtagtga agctggagag aaaatcctca      1620
     ttgagctgta cggtggggaa agatctagtc aaaccctgaa cgatttgcgc taccagcttt      1680
     tcacaagggc tgcagtcaat gccagtttca acttggccag acttcctccc acgcaagatg      1740
     ctgcaaagct gcattcgttt cgtacatacc accaggtgca gcactggctg ggtcacaaga      1800
     agaatccgat cgaatgggga tgggtttcta cagcccaaga cctttcccca aagatgatgc      1860
     cgagggaaat agctccctca aacctgctta ccatgatttc ttgcagttgc aagaagggat      1920
     gcagatatgc ttgcagctat aggaaagctg gtttgaagtg ttcagtcgtc tgtggaacct      1980
     gcaatggcca atcatgcgaa aatcttcctg aaattattgt ggacgtcgat ctcaacaccc      2040
     acgatttgga cgaactcgat gacgacgacg acgagatgga taggctgctc gaacaggtcg      2100
     aggaacaata tcaggtatac ttacaatcgt attgctattg aaagtgacct ttattcctat      2160
     taattaatac ctaccatatg ttattgatac cattatttcc gtcagttaat acttatcaac      2220
     atgtgtgttg tatttatatt aggacttttc gacaaggttt aaccttggga taatcgacaa      2280
     atacatattt acattctatt tcaggacgtc caagacgaaa attacactga aggatgcgga      2340
     ttggcagatt tatttggccc cggtccatcg aagagaagaa aatgtcttta attaacattc      2400
     cgtgtagaca ttcaattcat ttacactttt tatacaacct gatgtaatta tttgttcaat      2460
     aatttcttgt atacacttat ttcttcagtt tcacttgcct tgtgaacagc gaccttccac      2520
     cagtgaccca caaaatgaca aacgaataaa tatatacctc actgaatcat ttcagacaga      2580
     ttatagcaga tataaagacg acagcataaa atgaatatga atattagctt caatcttaaa      2640
     agttgtgaaa atttgccaat ttttgaaaag ctgtatctca ggaattattg tgtcttccga      2700
     gctcattttg gtctcaaatt gtatcaaatt taatgtagtt taaaaatgta ctgaacagtg      2760
     tttgtcgaaa atggtctcct tcagggcaaa aatgagaaaa aaccgaaaaa agcgaaaatt      2820
     tagcggtgtt tgggatttca aaagtgatcc gggtctcggg cttggatcta gcatctcagt      2880
     cacatcccat acaaggaaaa aaaaaagaaa aaaaaggaaa cactaccccc atttgatgca      2940
     acttacgatg tactaggtta ctggact                                          2967
//
ID   Academ-N1_RPr repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 20.10, Created)
DT   20-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Academ; DNA transposon; Transposable Element; Nonautonomous;
KW   Academ-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-928
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the genome of Rhodnius prolixus.";
RL   Repbase Reports 15(10), 3418-3418 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Satellite sequences and Helitrons
CC   are masked out.
XX
SQ   Sequence 928 BP; 315 A; 144 C; 139 G; 330 T; 0 other;
     tagcccagtc aaattaggat ttaacctcgg aatggaagat aataagctat aaacttgtat        60
     aaatctttgt tttggcattt tataagttgg ctcaaaagtc tcatagaatc tcgtgtacgc       120
     gtcaccggaa atcagtggtc aaaggtcacg aaaatcgttt ttttttatat cttgtttcct       180
     ttgctctaaa tgacatttaa agttattaca aaagttgtag agcataaaat tctctacaaa       240
     tttggttcta tgcaattttt catacaatca accgttcttg agatagagcg cgaagagtgg       300
     gaggcgctta gccgtatgta tagtaacgtt aggtcaactg tgtaattcag tacatagtac       360
     gttttataaa gttacaaaaa tattataatt attaagaaac cttagttact aactaattaa       420
     tgtattttaa tgtaatttta ctaaatatta ttaaacggat attttattta tgaataatat       480
     ctataaatat tacttattat tagttaataa ctaaggtttc ttaataatta taatattttt       540
     gtaactttat aaaacgtact atgtactgaa ttacacagtt gacctaacgt tactatacat       600
     acggctaagc gcctcccact cttcgcgctc tatctcaaga acggttgatt gtatgaaaaa       660
     ttgcatagaa ccaaatttgt agagaatttt atgctctaca acttttgtaa taactttaaa       720
     tgtcatttag agcaaaggaa acaagatatt tacaaaaaaa aagattttcg tgacctttga       780
     ccactgattt ccggtgacgc gtacacgaga ttctatgaga cttttgagcc aacttataaa       840
     atgccaaaac aaagatttat acaagtttat agcttattat cttccattcc gagatttacc       900
     ccttttttta cctaatttga ctgggcta                                          928
//
ID   ACCORD2_I   repbase;    DNA;    INV; 7212 BP.
XX
AC   AC008256;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   ACCORD2_I is an internal portion of ACCORD2 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag;
KW   Gypsy superfamily; integrase; internal portion; ACCORD2_LTR;
KW   ACCORD2_I.
XX
NM   ACCORD2_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7212
RA   Kapitonov V.V. and Jurka J.;
RT   "ACCORD2, a family of GYPSY-like endogenous retroviruses in
RT   Drosophila melanogaster.";
RL   Repbase Reports 2(8), 1-1 (2002).
XX
DR   Genbank; AC008256; Positions  166237  159026.
XX
CC   LTR of ACCORD2 is listed in Repbase Update as
CC   ACCORD2_LTR. ACCORD2 was active relatively recently since
CC   its internal portion is flanked by 98% identical
CC   LTRs. Regions encoding Gag, RT and INT proteins are slightly
CC   damaged by mutations.
XX
FH   Key           Location/Qualifiers
FT   CDS           2084..3295
FT                 /product="ACCORD2_I_1p"
FT                 /translation="MLGKKANISNTVRGRLGLRSESGLSEIREATEPKEKD
FT                 QSVQSEDNNPTNTMDSGNDTAAISPIVNSSRNTNLSLQQLLTLVHQLPTYE
FT                 GPPDNLDRFIDRVDQLLLLASSVDQTTGGKYLLGTIRDKIKGRADEALNVC
FT                 DVLLTWDDIKINLKRLYSSKKTEEMLVRELHNLPDGLSMGKLYYSAAKIRS
FT                 DLMSLAREADPSAHSLAVKRDQYDRFCLNTFLTGLKDPLSSAIRNQRPETI
FT                 EKAYEYGQIELNFHRSLNKHQDNRRRDNPFHRNHPYAKGQPTNSDYNNRYI
FT                 PRQQNYNNGNNARHVPRYDNNSNNNDSRFIQRQQNFNNNNNRRFTRQHNSH
FT                 NDSNGRQDRETLGRNPFHNNEQPDQTLSHQNRNKHNPSAPLCNINDDANFL
FT                 LEASGSQSAT"
FT   CDS           join(3516..4817,4821..6047,6008..6472,6476..6766)
FT                 /product="ACCORD2_I_2p"
FT                 /translation="ISNNSKKYPILSSYYFDFHSHFNGLLGMDILSSLNAK
FT                 INLAESILETPETAIPILTRANPVDTVYNLPQNTKMLLPLPVNLMEGDFIY
FT                 ETTNLDNQVSITGGLNTANAGSAYFEVCNNSDQIQTLYLEEPLQAEEFSSQ
FT                 THQYLNCMTAATDTERQDDQQLNILTEHLNSEEKQYILKLCKSFKRLFHNE
FT                 NNQLTFSNAIKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIK
FT                 NSHSPWSAPVWVVPKKSDNIGEKKWRLVIDFRKLNEKTVSDRYPIPNIADI
FT                 LDSIGKTMYFTTIDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMPFGLK
FT                 NAPATFQRVMDNVLGDLVGNVCLVYLDDIIVFSPSLQKHIADIKSVFTKLQ
FT                 NANLKIQPSKCSFLRKEIDFLGHIVTQEGVKPNPLKIQTIDFPCPKTTREI
FT                 KSFLGLLGYYRKFIKDFAKITKPITRQLKGKKFIIIDDEFRQAFETSKDLL
FT                 CNDPILIYPDFNKPFTLTTDASNYAIGSVLSQGPDTNDRPISFSSRTLSNT
FT                 EIRYSTIEKEMLAIIWSVRHFRLHLFGRRFKIVTDHKPLIWLENLKGQNPK
FT                 LLRWKTILAAYDYEVVYQKGSQNVVADALSRIEPNLNINEDPRIIPIVSQP
FT                 LNHFNCQIIFCTGSTTLREVETPFIHKVRHIITEPVHTFDSVTNTLQAIMK
FT                 PNKTVAIFAPDDIFKIIEESYNNYFFENDLYKIVRCNIWLTEITNPNDQEN
FT                 EIRAYHLNTNHRGIDETYNHLKRDIYFPHLKDTITKIIKNCDTCLTLKYDR
FT                 HPHRPLMQDPTAPEGPLAVVHIDIYFINILVTSQLSINSPSYTCNLTIIDK
FT                 FTKLAQAYPLSNRNSIKVADALLQFISHYGAPKKIIFDQGAEFSGSLFNDL
FT                 LTQFQITAHTTSFQQSTGNASVEGLHSTLTELYRIILNKRKEARLEREHVQ
FT                 ILAEAVATYNNAIHSSTSYTPFELFHGRTHIFNKTIIIDNHHDIKKLNEFR
FT                 KDIYPKGQEHLSATAERRLAKLNKDREKPVQVEPNDTIFRKENRRNKITPK
FT                 FSLHKVDRDKGVTFLTTKGQKLHKQKIRKRVKKTVAGT"
XX
SQ   Sequence 7212 BP; 2768 A; 1582 C; 1191 G; 1671 T; 0 other;
     ggcgcagccg gtcaacggac aagggattaa caatgcccac tacgcttaaa gaggtattga        60
     acatgtgacg gcagtggttg tggggatttt attagtgagt ggtgaaatag aaaggaattg       120
     gataaagcgt attgaaacat aataacgtgc aagtgcaagt aaaacaaagg aaacaaacga       180
     aatcaagttc aaattgcttc acaggcgacc gtatatgtgt acatcaaacg ctgataaggc       240
     accgggatcg cttgtgcggg acaatttaca acaattatac caacaagtta ctgtgtgtga       300
     tgaccgtata tgtgtacatc aatcgctgat aaggcaccgg gatcatccat acaccctaac       360
     tcataaaaat ggtaaattaa tcaacaaaaa aaaaaaataa ataaataaaa aaaaaaaaaa       420
     taaaagagga aaaatttttt ctgacatgtt aaactactgt gtatggttac catttgtgtg       480
     tcggagagcg cttggtgtgt gcgagagtat tggttgctct ttggttactt cataagaatg       540
     gtaatttcat caccatggta atattacatc agcctatatt cgcactgcga acggttgttg       600
     tgtctctata gttctgagaa caaccgtttg gcacggcgac agagcgacgt cgctgccgct       660
     gagtgttggt cgttgtgcac aacagaaaag agaatggtaa agaacgagat cagtcgaata       720
     ttagactacg ttgtgaccag aactcgctcc gcaaagaata aattttggac accgatcgcc       780
     tccgagacaa cgggacctcc tacacaagtg tttttaaaaa aaaaaaagaa ataaatataa       840
     taataaataa ataaatgtaa gttgtgtgat taacgaccga atatgtgcac atcaatcgct       900
     gataaggcac cgggatcgtt ttcacttaaa aatttaaatg aacacaaatt ttttttaaca       960
     aatacagaac tcgctgtgca ggaggtgaat ttgaacatca gtcgcctcca aggcaacgag      1020
     atctaattca cagtgggtta taaaaataaa tgtgagttgt gtgattaacg accgaatatg      1080
     tgtacaacaa tcgctgttaa ggcaccggta tcgttttcac ttatccattt acatgaaaaa      1140
     aaaataataa taataacaat cataataata ctaataaata aaaaaaaata gacaaaaaaa      1200
     agaaaaaaag gaagaataaa aaaaaaaatt tgcacagtga tacagtttcc ttcggcaaaa      1260
     tcaagtaagc atgtatgtgt ttgtgttgcg ccgcttgtat aaccctagcg acgtcgacgc      1320
     atcactgcac attggctgcc gccaaaagct gatgtcgctc cagagtgcga aagttaaaag      1380
     tatataacag aaagcatttc agaccctgta acgtatgtcc ctttgtaccc ctgtccggcc      1440
     gtatgaacct caattagatt tgcagacatt atgactccta cgcttcgcca gtatatacag      1500
     tatatacact acaaaaaaaa acactcaatt aaaaaaaaac ccactcaaaa aaaaaaatgc      1560
     atatatgtat agaaaaaaaa agaaaaaaaa aaaccaactt aacgcctact gttgtcacat      1620
     gttcacagac ctataaaaaa tacactctat tcaatagcta tttaaatcat gtattacagc      1680
     taaagtcgaa aacacgaaaa aaaaaactac aaaggtggat agaagcacag cagcactaca      1740
     agaacgacat atactaagca ccgggaaaca aggataagaa gaaactgcgt aacggacaca      1800
     cacatacagg ttttctttta ttttgaaaag aatacacaca tataatacac attcaaacag      1860
     atacatatac atagcatcac agaatataat acaatatatt actacattaa tatacaaacg      1920
     aaaacaaaac aagcctaaca cccaaaattt tccctaaaca aaaagatatt attaatatac      1980
     ctatttttac atattattac acatatcata actatacccc aatatataat tattcactat      2040
     tatttgcaaa aaaaaaatac agatttcttc ccaatacgtg taaatgttag gaaaaaaagc      2100
     caacattagt aatacagtta ggggcagact agggctaaga agcgaatctg gtctatctga      2160
     gataagggaa gcgacagaac ctaaagaaaa agaccagtcg gttcaatccg aagacaataa      2220
     tcccaccaac actatggatt ccggtaacga cacagcggca ataagtccta tcgttaattc      2280
     atcaagaaac acaaacctga gcctacaaca attactaacc cttgtacatc aactaccaac      2340
     ctacgaaggc ccacctgaca atcttgatag attcatagac agagtagatc agctcctttt      2400
     gttagcctca tcagtggacc aaacaacagg cggaaagtac ttacttggaa ctatccgtga      2460
     caaaattaaa ggcagggcag atgaagcact gaatgtctgc gatgtactcc ttacttggga      2520
     tgacatcaaa ataaacctca agcgactata ctctagcaag aaaacagaag aaatgcttgt      2580
     tagagagcta cacaaccttc cggacggact cagtatggga aaattgtatt actcagccgc      2640
     taaaataaga agcgatttaa tgtcactcgc tagagaagcc gaccctagtg cacactctct      2700
     cgcggtcaaa cgcgaccaat acgatagatt ctgcctaaat acattcctaa ctggattaaa      2760
     ggacccactt agttcagcca ttaggaatca aaggccagag acaatcgaga aagcatacga      2820
     gtacggtcag attgaattaa atttccatag aagcctgaac aaacaccaag ataaccgacg      2880
     acgcgacaac ccatttcaca ggaatcaccc atacgcaaaa ggacaaccaa ccaatagcga      2940
     ctacaacaat cgctacatac cacgacaaca gaactataat aatggcaaca acgctcgtca      3000
     tgtaccacga tatgataaca acagcaacaa caatgatagc cgctttatac agagacagca      3060
     aaattttaac aacaataata atagacgctt cacacgtcaa cataattccc ataacgatag      3120
     taatggtcga caagacagag aaaccctggg caggaacccc ttccacaata atgaacaacc      3180
     agatcagacc cttagtcacc agaacaggaa caagcataac ccaagcgctc ccctatgtaa      3240
     cattaacgat gatgcgaatt ttctactaga agcctcggga agccagtcgg ccacataagc      3300
     aagaagactc acggatcttc cttgccattt gttttcttat caccaaactc catggtgtca      3360
     aaccctctca aattcctaat agacactgga tctactcact ctttcataaa tccagcactt      3420
     attaacgaag agcacgacaa aaaaattaac ctcggatatc aatatccaca ctgttcttaa      3480
     taaattcaaa attcgggaat ataccgataa aataaatttc aaacaattcg aaaaaatacc      3540
     caattttaag ttcttattat tttgatttcc actcccactt caatggcctc ctaggcatgg      3600
     atatcctatc tagcctaaat gcaaaaataa accttgccga atccatacta gaaacaccag      3660
     aaaccgccat cccaatcctc acaagagcaa accctgtaga cacagtatat aacctgccac      3720
     aaaataccaa aatgctactt ccgctcccag taaacttaat ggagggagat tttatatatg      3780
     aaaccaccaa tttggataat caagtatcca taacaggcgg tttaaacacc gcaaacgcag      3840
     gatcagctta tttcgaggtc tgcaataact cagaccagat ccaaacactt tacctcgaag      3900
     aaccgttaca ggcagaagag ttctcttcgc aaacccacca atacttaaac tgcatgaccg      3960
     cggcaacaga tacagaacga caagacgacc aacaattaaa cattctgacg gaacacctca      4020
     acagcgaaga aaaacaatac atacttaaac tgtgcaagtc attcaaaaga cttttccaca      4080
     acgaaaacaa ccaactaacg ttctctaacg ccatcaaaca ctctatacca acaacagata      4140
     atataccgat tcacacaaaa tcataccgtt acccattcgt acataaagac gaagtccgaa      4200
     agcaaatttc aaaaatgctc gaacaaaaca tcataaaaaa cagccattcc ccctggagtg      4260
     cacccgtttg ggtcgtacct aagaaaagtg acaacatagg cgaaaaaaag tggcgcttgg      4320
     taatcgattt tcggaaatta aacgagaaga ctgtctctga tagataccct atcccaaaca      4380
     ttgcagatat actagacagc ataggaaaga ccatgtattt cacaacaatc gacttagcaa      4440
     gtggctttca ccaaattcaa atgaacccac gcgacgcgag caagacggca ttcaccgtcg      4500
     aaaatgggca ttacgagttc acgagaatgc ccttcggtct caagaacgcc cctgccacgt      4560
     tccaacgcgt tatggacaat gttttgggtg acctagtcgg taacgtctgt ctcgtctacc      4620
     tcgatgacat aatagtattc tccccctcac tccaaaaaca tatagcagat attaaatctg      4680
     ttttcacaaa actccaaaac gcaaacctaa aaatccaacc aagcaagtgt agcttcttaa      4740
     ggaaagaaat cgacttcctg ggacatatcg taacccagga aggagtcaaa ccaaacccac      4800
     ttaagattca aaccatctag gacttcccat gtccaaagac aaccagggaa attaaatcat      4860
     ttttaggact attagggtat tacaggaaat tcataaagga ctttgcgaaa ataactaaac      4920
     ccataacgag acagttaaaa gggaagaaat ttataataat agacgatgaa tttagacaag      4980
     cattcgaaac gtcgaaagat ctcctttgta atgatcctat actcatatac cctgatttca      5040
     ataaaccgtt cacgctgacc acagacgcaa gtaattatgc gataggctct gtgctgtcac      5100
     aaggtccaga tactaatgac agacccatat ctttctctag caggacacta tcgaacacgg      5160
     aaatccgcta ttctacgata gagaaagaga tgctagctat catttggtct gtacgtcact      5220
     tcagactaca cctctttggg cgtagattca aaatagtcac agaccataag ccattaatct      5280
     ggctagaaaa tctgaaaggt cagaatccaa aactacttcg atggaaaact atcctggccg      5340
     cttacgacta cgaagtcgta taccagaaag ggtcgcaaaa cgtagttgct gacgcactca      5400
     gcagaattga gccaaactta aacataaacg aagacccacg aattatacca atcgtttcgc      5460
     aaccactaaa tcacttcaat tgccaaataa tattctgtac cggatcaaca acgctaagag      5520
     aagtagaaac accatttatc cataaagtaa gacacataat cacagaaccc gtgcatactt      5580
     tcgactccgt tacaaacact cttcaagcaa tcatgaaacc gaataaaaca gtcgctatat      5640
     ttgcaccgga cgatattttc aaaataatag aagagtccta taataactat ttttttgaaa      5700
     atgatttata caaaattgtc cgctgcaata tatggctaac cgaaattacg aatcctaacg      5760
     atcaggaaaa cgaaattcgt gcgtaccact taaataccaa tcataggggg atagacgaaa      5820
     cgtataacca tttgaaaagg gacatttact tcccgcattt aaaagacact atcacaaaaa      5880
     ttataaaaaa ttgtgatacc tgcctaaccc taaaatacga tagacatccc catagaccat      5940
     tgatgcaaga cccaaccgcc ccagagggtc cattggcagt cgtacatata gacatatatt      6000
     tcattaatat acttgtaacc tcacaattat cgataaattc accaagctag cgcaagccta      6060
     ccccctaagc aatagaaatt caataaaggt cgccgatgcc ctattacaat tcataagtca      6120
     ctatggcgca ccaaagaaaa taattttcga ccagggcgcg gaattttcgg gcagtctatt      6180
     caacgacctc ttaactcaat tccaaataac agctcataca acttcatttc aacaatcaac      6240
     gggcaatgct tctgtcgagg gactgcactc caccttaacc gaactataca ggataatctt      6300
     gaacaaaaga aaggaagcac gcctagaacg cgagcacgtc caaatactcg cagaagcagt      6360
     agcaacatat aacaatgcaa tacactccag cacttcctat acccctttcg agctcttcca      6420
     cggaagaact cacatattca acaaaacaat aattatcgac aatcaccacg attaaattaa      6480
     aaaattaaac gaatttagaa aagacatata cccaaaagga caggaacatt taagcgcgac      6540
     cgcagaaaga agattggcta aattaaacaa ggacagagag aaaccagtac aagtcgagcc      6600
     taatgataca atatttagaa aagaaaaccg cagaaacaag ataacaccga aattttcact      6660
     acacaaagta gatagggaca aaggcgtcac tttcctaaca actaaaggtc aaaagttaca      6720
     caaacaaaaa attagaaaaa gagttaagaa aacagtggca ggaacataag aaagacaagc      6780
     actatttaat aaatatatta ttatcaaact aagtaacata aaaacccaca ttaacaagaa      6840
     agaacactta tttattataa agtaggaata gcttcaattt agacacttta attacgtaaa      6900
     taaagtagtc gatagccatt agccagtaaa ctaaacatta tccctaaact gttatatcat      6960
     aagaaacaaa taataatata agatagaaat taagtaaaca aaatgtaact ttagcattag      7020
     atgtaacgtt tatatacaca acactcatgt ttaacattaa gatacccatt aaaaaaaaaa      7080
     aaactgttaa attcaaaata cagtcggagt tcgtggcata taccaacaac acgccaccta      7140
     atcaccttgc tccgatccgg ccatttccca ttacggcctt ctcttcggac tggggggggg      7200
     ggggggggga gg                                                          7212
//
ID   ACCORD2_LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   ACCORD2_LTR is a long terminal repeat from the ACCORD2 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; ACCORD2_I;
KW   ACCORD2_LTR; Gypsy superfamily; Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-215
RA   Kapitonov V.V. and Jurka J.;
RT   "ACCORD2, a family of GYPSY-like endogenous retroviruses in
RT   Drosophila melanogaster.";
RL   Repbase Reports 2(8), 2-2 (2002).
XX
DR   [1] (Consensus)
XX
CC   ACCORD2_LTR is a long terminal repeat from ACCORD endogenous
CC   retrovirus; it flanks ACCORD2_I internal sequence.
CC   ACCORD2_LTR copies are ~98% identical to the consensus sequence.
XX
SQ   Sequence 215 BP; 63 A; 54 C; 36 G; 62 T; 0 other;
     agttaacata ccccctctct cggtctaccc agtactgcaa ctgagagccg agcgaaagtt        60
     caacgaagat cgccaatacg aactctgacg aagatatttg ggagatacat tatacatatt       120
     tgtaataaag aattcattat cattctcatt tcacacctca aactactcag tcgttttttt       180
     ggaagctttc ctccctcggc cacgggattg taact                                  215
//
ID   ACCORD_I    repbase;    DNA;    INV; 6288 BP.
XX
AC   .
XX
DT   09-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   ACCORD_I is an internal portion of ACCORD retrovirus-like element
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Transposable Element; gag; Retrovirus; pol;
KW   env-like; internal portion; ACCORD_I; ACCORD_LTR.
XX
NM   ACCORD_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6288
RA   Kapitonov V.V. and Jurka J.;
RT   "ACCORD_I.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [1] (Consensus)
XX
CC   LTR of ACCORD retrotransposon is listed in Repbase Update as
CC   ACCORD_LTR. ACCORD can be an active retrovirus since some of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   ACCORD has a target-site specificity: it generates
CC   duplication of the CGYG target-site upon its integration
CC   into the drosophila genome.
CC   ACCORD_I internal sequence encodes gag (position 994-2043),
CC   pol (position 1998-5537) and env-like (position 4477-6033)
CC   polyproteins. ACCORD_I nucleotide and protein sequences are most
CC   close to ZAM, the Gypsy-like retrovirus. There is ~65% nucleotide
CC   identity between both retroviruses; 45% identity between gag
CC   and 57% identity between pol polyproteins. Pol includes
CC   protease, reverse transcriptase and integarse(endonuclease)
CC   domains. Env polyprotein encoded by ACCORD and ZAM are 35%
CC   identical. ACCORD's env is ~200 aa shorter than env encoded
CC   by ZAM.
XX
FH   Key           Location/Qualifiers
FT   CDS           994..2043
FT                 /product="ACCORD_I_1p"
FT                 /translation="MPKRIPFNTQSKRRLGLRSGGSLPQIREQVEQSTNSN
FT                 NMDSGNASAPLSPTTSATSTVINTNLNPTDILAFIEQLPTFEGHPSNLDKF
FT                 ITSAEELLFLIRSVDKTPYGQLLLRAVRNKIVGKADDALTLCDTRLNWDDI
FT                 KTNLKRLYTSKRTEAMILREIQTLPNDLTMGKPFYSIIKMRNELITIAKDM
FT                 DTTGNALATKRTLYDDICLNAFIIGLKDPLRTIIRIRNPDTIEKAYEYGQM
FT                 EQSFFFQNSNRQVEGRRRDNPTDRGRPYPKNNQQEPKLSNNNGRNISHQQT
FT                 SHQQGGQSMRNQNTSHNYEKPTSTHQQYRINTNTNVNLCNINDDTNFPQRA
FT                 SEDQSDS"
FT   CDS           2082..5537
FT                 /product="ACCORD_I_2p"
FT                 /translation="MLSPTFVPSQPLKFLIDTGSTYSFINPALITEDNIKK
FT                 LNSSIAIHTVLNTFQITEFTDTIKFKQFKELSNQKFLLFNFHPHFNGLLGM
FT                 DLLSTLNAKINIADSILETPETAVPILTRPNPVDILHTVPSNSKVRLPLPV
FT                 NCMQGDFIYGTTDFDNQLSITGGLYTATAGIAYFEVCNSSDYNQTLYLEEP
FT                 LIAEELSLQHYGLLHCMSTMADTTQTDTQQELNIKTEHLNQEEKFNLINLC
FT                 KTFRKLFHYEESHLTFSNVVKHSIPTVDNVPIFTKSYRYPYVHKEEVRKQI
FT                 SEMLRQNIIKNSHSPWSAPVGIVPKKADTTGKEKWRLVIDFRKLNEKTISD
FT                 RYPIPNIADILDRIGGTKYFTTIDLASGFHQIEMNPQDANKIAFTVENGHY
FT                 EFTRMPFGLKNAPATFQRVMDNVLGDLIGNVCLVYLDDIIIFSPSLQKHIS
FT                 DIKLVFSKLLNANLKIQPAKCNFLRKEIDFLGHIVTQEGVKPNPNKIQAIK
FT                 DFPCPKTIREIKSFLGLLGYYRKFIKDFAKITKPITRQLKGKKSIVIDDEF
FT                 RKAVEISKNLLCNDPILIFPDFTKPFTLTTDASNYAIGSVLSQGPDTNDRP
FT                 ISFASRTLSDTEVRYSTIEKEMLAIIWSVSHFRPYLFGQKFKIVTDHKPLV
FT                 WLESFNGQNPKLLRWKTTLAAYDYEVVYKKGKQNVVADALSRIEPNLNINE
FT                 DPQKIPVVQQPLNHFNTQIVFHIGEKSSVQITTPFTYKTRQVISEPTYTFD
FT                 TISNILQSILKPNKMTAIFAPDQIFLLIEEAYNNYFSVNDSYKISRCKLFL
FT                 PEITETEDQKTRILTYHLKNNHRGIDETFQHLKRDIYFPRMKDIITQVIKD
FT                 CDICLTLKYDRQPHKPAMQSPPAPPGPLEVIHIDIYFVNGTYNLTVIDKFS
FT                 KFAQAYPLDNRNSIKIIAALSQFMSNFGIPKKLVFDQGTEFSGNLFNDFLA
FT                 QYDILQHTTSFQQSTGNSPVERLHSTLTELYRIVMNRRKELHLQCEHTEIL
FT                 SEVLTTYNNAIHSSTNHTPFELFHGRTHIFGKTITYDNHHDYLSKLNQFRQ
FT                 TLYPQIQQHLQNTTDKRLAKLNKDREPPILVEENNTIYRKENRRNKITPRF
FT                 SLHKVERDRGITLITTRGQKLHKQKIRKHIKRTVNTQSKSNTNT"
XX
SQ   Sequence 6288 BP; 2398 A; 1414 C; 943 G; 1533 T; 0 other;
     ggcgcagccg gactagaact aaaaggatta acaacgcctt tcacgttctt cgttccactt        60
     ctgtaaacgg gcaagtgagt gaacaagtgg cagaaaaaaa aaaacacaag tttgaggagc       120
     caagtgtaaa tatgtggttc tcaaaaaaaa gagaagaaaa ggaaaaaact tcacacaaac       180
     aagttcaaca gtgacataca gtataattac aaactattgt gaccgaatat gtgcacatca       240
     atcgctgaaa gggcaccggg atcacacata aaaaaaatgt ctttacattc aaagtgaccg       300
     aatatgtgca catcaatcgc tgaaagggca ccgggatcac ttatgacata cataaaaagt       360
     taacatcatt cagtgctatg gccaaatatg tgtacatcaa tcgctgatga gacaccggga       420
     ccatacataa ataagcaaaa caaataaatc tagttcaatg ttgtggccga atatgtgtac       480
     atcaatcgct gaaaaggcac cgggaccaca acattgaaag aaattaaaca ataaatcagt       540
     aataaaatca ctatgtgtgt caggttgaac ctttccttga aagccatata cttgttcgcg       600
     aatgctccca attgagaaac atttgtcaaa ttacaaatac actcaactta ctacttcgga       660
     ttgtgttact gccatgtgtt catttactta tacaaactga atataaattt tttatactta       720
     ctaatgtaca taatatatta cagtcaaaca ttggagccaa cacttactta gaaagaaaca       780
     aacggattca tattataaat acacactaca ttttaagatt atctatatat aagattacaa       840
     ttacttaatt acaccttatt atttaagcta aaacattaca ctaaacatat acacaacata       900
     taggtacacg tatacaaaag tatataagca caataacaca tataccatat ttttaagtac       960
     aacacacaga ctacacaaat caaaaacacc tacatgccaa agagaattcc gtttaatacc      1020
     caaagtaaaa gaagacttgg acttagaagt ggaggcagcc ttcctcaaat tagggaacaa      1080
     gtagaacaat ccaccaacag caacaacatg gactcgggaa acgcatcagc ccctttaagt      1140
     ccgactactt ccgctacttc cacagttatt aacaccaacc ttaacccaac cgacattttg      1200
     gcttttatcg aacaactccc cacttttgaa ggtcatccta gcaatctcga caagttcata      1260
     actagcgctg aggaactgct gttcctcatt agatcagtag acaagacccc ttatggacaa      1320
     ctacttctaa gggccgtccg caacaaaatc gtaggaaaag cagacgatgc cttgaccctt      1380
     tgcgacactc gattgaactg ggacgacatc aagactaatc tcaaacgact ctacaccagc      1440
     aagagaaccg aagcgatgat acttagggaa atacagaccc tcccaaatga ccttacaatg      1500
     ggaaaacctt tttacagtat aattaaaatg agaaacgaac ttataacaat agctaaagac      1560
     atggatacca cgggtaatgc actcgcaact aaacgtaccc tctacgatga tatatgtctc      1620
     aacgcattta tcatcggatt aaaggatcca ctaagaacaa tcataagaat taggaacccg      1680
     gacactatcg aaaaagctta cgaatacgga caaatggaac aaagtttttt cttccaaaac      1740
     tcaaacagac aagtagaggg ccgtcgccgt gacaatccaa cggacagagg acgcccatac      1800
     ccaaaaaata accaacaaga accgaaacta tcaaataata atggtcgcaa catttcgcac      1860
     caacaaacca gtcatcagca agggggacaa tcgatgagaa atcaaaacac atcccacaac      1920
     tacgaaaaac caacttcaac acaccaacaa tacagaatca atactaacac aaatgtaaat      1980
     ttgtgcaaca taaatgacga cacaaatttt ccgcaaagag cctcggaaga ccagtcggat      2040
     tcataactaa aaaagcccac gggtcatcat taccttatgt aatgctatcc ccaacatttg      2100
     tcccttcaca accacttaaa ttcctaatag acactgggtc cacttattca tttataaacc      2160
     cggccctcat tacagaagac aatataaaaa aacttaattc aagcatagcc attcatacag      2220
     tacttaatac attccaaatt acggaattca cagacactat taaatttaaa caattcaaag      2280
     aattgtcaaa tcagaagttt cttttgttca attttcatcc acacttcaat ggcctcttag      2340
     gcatggatct tctatccact ctgaatgcaa aaataaacat cgcggattcc attttggaaa      2400
     cacctgaaac cgcagttcca attttgacac gaccaaaccc tgtagacatt ttgcatactg      2460
     taccatcaaa tagcaaggta aggcttccac taccagtaaa ctgcatgcaa ggagacttta      2520
     tatacgggac cacagatttt gacaaccaac tatcaataac aggtggactg tatactgcaa      2580
     ccgcaggtat agcctatttc gaagtctgta acagttcaga ctacaaccaa acactttatt      2640
     tagaagaacc attaatagca gaagaactct ctttacaaca ctatggactt ttacactgca      2700
     tgtctacaat ggcggatact actcagacgg acacccaaca agaacttaat attaagacag      2760
     aacatttaaa ccaagaagaa aaatttaatc taatcaatct atgcaaaacc tttaggaaac      2820
     ttttccatta tgaagagagc catttgacct tttctaatgt cgttaaacac tccataccaa      2880
     cagtagacaa tgttccgata ttcactaaat cataccgtta cccatatgta cacaaagaag      2940
     aagttcgtaa acaaatatca gaaatgcttc gacaaaatat tattaaaaac agtcactctc      3000
     cttggagtgc acccgtaggg atcgtaccca aaaaagccga cactacaggc aaagaaaaat      3060
     ggcggttggt aatagatttt cgaaaattaa acgaaaaaac catctccgac cgttatccga      3120
     tacctaacat agcagacata ctggaccgaa taggtggaac aaaatacttc acaacaatag      3180
     acttggcaag tggattccat caaattgaga tgaatccaca agacgcgaac aaaatagctt      3240
     tcacagtcga aaatgggcat tacgaattca caagaatgcc cttcggtctg aagaacgcac      3300
     cagccacttt tcaacgtgtg atggacaacg ttctaggaga ccttataggt aatgtttgtc      3360
     tggtttacct agacgacatt attatattct caccctcact gcagaaacac attagcgaca      3420
     ttaaacttgt tttctctaag ctactgaatg cgaatctaaa aatccaacct gctaagtgta      3480
     acttcttaag gaaagaaatt gactttttgg gacacattgt tactcaggag ggagtcaagc      3540
     ccaacccaaa caaaatacaa gctattaaag actttccctg ccccaaaacc atcagggaaa      3600
     tcaagtcatt tttgggatta cttgggtact ataggaagtt tatcaaagat ttcgcaaaaa      3660
     taacaaaacc tataacaaga caattaaaag gaaaaaaatc aatagtaata gacgacgaat      3720
     ttaggaaagc agtcgaaatt tcaaagaatt tattatgcaa cgacccaata cttatattcc      3780
     ccgactttac aaaaccattc acgttgacga ccgacgcaag caactacgcc atagggtcag      3840
     tgctatcaca aggccccgat accaacgaca gacccatatc cttcgctagt agaacgctat      3900
     cagacacaga ggttcgatat tccaccatag aaaaagaaat gctagctatt atttggtcag      3960
     taagtcattt taggccatac ctttttggcc agaaatttaa aatagtcaca gatcacaaac      4020
     cattagtctg gttagaaagc tttaatggtc aaaaccctaa actacttcgg tggaaaacta      4080
     ccctagccgc atacgattac gaagtagtgt ataaaaaagg caaacaaaac gtggtcgctg      4140
     atgcgcttag tcgaatagaa ccaaatttaa acataaacga agacccacaa aaaatcccag      4200
     ttgtccaaca accattaaat catttcaata cacaaattgt gttccacatt ggggaaaagt      4260
     cttcagtaca aatcacaaca ccatttacgt acaaaacaag acaagtcatt tcagaaccta      4320
     catatacctt tgacactatt tctaacatct tgcaatcaat tcttaaacca aacaaaatga      4380
     ctgcaatatt tgccccagat caaatctttt tgctcataga ggaagcgtat aacaactact      4440
     tctcggtgaa cgactcatat aaaatctccc gttgcaaact gttcttaccc gaaataaccg      4500
     aaacggaaga ccaaaaaaca agaatactta cataccactt aaagaacaac cacagaggta      4560
     tcgacgaaac ctttcaacac ctaaaaagag atatttattt cccccgcatg aaagatatta      4620
     ttacgcaagt aataaaagac tgtgacattt gccttacact taaatacgac aggcaacccc      4680
     ataaaccagc tatgcaatca ccacctgccc caccaggacc tttagaggtg atccacatag      4740
     atatttactt cgtcaatggt acttataatc taactgtcat tgacaaattt tcaaagttcg      4800
     cacaagcata cccgcttgat aacagaaact ccataaaaat cattgccgcc ttgtctcagt      4860
     tcatgagcaa ctttggcata cccaaaaaac ttgttttcga tcagggaaca gaattttccg      4920
     gaaacctgtt taacgatttc cttgctcaat acgatatact ccaacatact acttcattcc      4980
     aacaatcgac tggtaattca cccgtcgaaa gacttcactc tacgttaaca gaattgtaca      5040
     gaatagttat gaaccgtcga aaagaattac acctacagtg cgaacatacc gaaatactta      5100
     gcgaagtatt aacaacctac aataacgcga tacattctag cacaaatcac acccctttcg      5160
     aactctttca cggcaggaca cacatatttg gaaaaaccat aacttatgac aatcatcatg      5220
     actacctctc aaaactaaat caattcagac aaacactata cccccaaata caacaacacc      5280
     tacaaaacac caccgataag agattggcta agttaaataa ggacagggaa ccgccaattc      5340
     tagttgagga aaataatact atatatagga aggaaaacag aagaaacaaa ataacaccta      5400
     gattttctct acacaaggta gaaagagaca gagggataac actaataact accagaggtc      5460
     agaaattaca taaacaaaaa attaggaaac acattaaaag aactgtgaac acccagtcca      5520
     aatcaaacac taacacttaa tgaattcaac taaacatgaa aatgtaacaa ttaaaagaca      5580
     aatttgataa acagacaggg acattattat caggatcata tataaaatag aacacgtaaa      5640
     taacaaacaa gtttcgatat agaaattttt cgaaaattac cagaaccaaa tttttaaaga      5700
     gcaataacgt ggccgaaagc ttacttgcta gtaagttagg cctcattttc aaatttatgt      5760
     ttaatacaca acaattagaa gacatacgaa ttttatttaa taagcaaaat ataaccatag      5820
     aattggatga acacattaac aacttttgta accatcctgt taaactctta cttgcaacac      5880
     caaactatta tttaaggtta aaaatccatt tttcaactag caaatgtatc atttcattca      5940
     aacaattccc ttacctatac attgttcata cttcattgtc tcccacgaca aacttaccat      6000
     cgagatacca ccaatggaac gaatagaaaa taacaaaaca ttgaaagtcc tatcactcga      6060
     aaaactgcac ctggaggcat tggcaacaac cgggaaaatg gactacataa ctcaacaata      6120
     ctttaccgct acgtaccttg cattgagcat agtactaata cttgtgatct gtctccgaac      6180
     ctgtaaaagg cagaaaacga tttttaccca gcaacccacc cacacacctc acgttgtcga      6240
     gtcggctatc ccttcgttat ggccatctct ccgcactagg gggggagg                   6288
//
ID   ACCORD_LTR  repbase;    DNA;    INV; 558 BP.
XX
AC   .
XX
DT   09-JUL-1999 (Rel. 4.06, Created)
DT   09-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   ACCORD_LTR is a long terminal repeat from the ACCORD retrovirus -
DE   a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; ACCORD_I;
KW   ACCORD_LTR; Gypsy superfamily; Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-558
RA   Kapitonov V.V. and Jurka J.;
RT   "ACCORD_LTR.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   [1] (Consensus)
XX
CC   ACCORD_LTR is a long terminal repeat from ACCORD endogenous
CC   retrovirus; it flanks ACCORD_I internal sequence.
XX
SQ   Sequence 558 BP; 176 A; 162 C; 98 G; 122 T; 0 other;
     agttaccatg cccagcatta acccccctca acaaccacct ccgcctatga agcccgcccg        60
     gtaggcgaca tcagcaaagt gccaacgctg tatatatata tattgatcac gagctaccat       120
     gccagcatag cctcgtcccc cgctacctga aactctgttg cacccgatga tgaaatcggc       180
     atgaacacac acacacacac atattcacac atactgcgtg gtggcgacgc tctcgacgtt       240
     gaaattaaca tgaacctaca cacacacata cacactgcgt aatcgcgacg tcctcgtcta       300
     gactcgctat ctagaactaa cgggatcaaa agcactgctg cttgcccgtg cgtatacatt       360
     aagaataaag ctttcatcat tcttgatctt gacaccaaac cgagcagttg atttatttaa       420
     agtggcaaat atatataacc tacatatatc ataagtacac aataaagtca ttattgactc       480
     ccatcacatc agcctgggca gcaactaact aagagtagag aaaggaggac ccccgatcca       540
     acggaggcac ccgtaact                                                     558
//
ID   Adg_Copia-70_AA-I repbase;    DNA;    INV; 4294 BP.
XX
AC   .
XX
DT   03-FEB-2016 (Rel. 21.03, Created)
DT   03-FEB-2016 (Rel. 21.03, Last updated, Version 1)
XX
DE   Copia-like element [Anopheles darlingi]. Gag-pol polyprotein.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Adg_Copia-70_AA-I.
XX
OS   Anopheles darlingi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; darlingi group.
XX
RN   [1]
RP   1-4294
RA   Elgion L.S. Loreto .;
RT   "The Genome of Anopheles darlingi, the main neotropical malaria
RT   vector.";
RL   Nucleic acids research 41(15), 7387-7400 (2013).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from a unique Copia-like element found
CC   in Anopheles darlingi genome with LTRs 99% similar to each other.
CC   .
CC   Pol polyprotein regions:
CC   252..332    ->DUF4219
CC   423..764    ->UBN2_2
CC   846..896    ->zf-CCHC
CC   1323..1520  ->GAG_pre-integrs
CC   1542..1910  ->rve_Integrase_Core_Domain
CC   2619..3359  ->RVT_2
CC   3909..3923  ->RNase_HI_RT_Ty1.
XX
FH   Key           Location/Qualifiers
FT   CDS           213..3941
FT                 /product="Adg_Copia-70_AA-I_1p"
FT                 /translation="KQKMDSVRVIVPRLSNDNYASWSFKVQMLLQREDVWH
FT                 AVEGGKPETVTTAWTKANTKAKAIIGLHIEDDQITLIRDCEDAKSAWEALK
FT                 KFHDNVSEVYLLKKLTSLTLAEGQSMEQHLSTFSELIQRIGASGESIPRKW
FT                 QVAMLLCSLPPSYDPLTTAIELTNINELTVESVKSKLLAEAEKRKERAGNI
FT                 ESENEKAMRSEVFRRNKKPAGVVCYNCNKPGHLKRNCRLLRNDEAKRVENN
FT                 NEKPAEECAFTISQEEATEWYVDSGASRHMTGNKEFFNQFSATNMGTVTLA
FT                 NGQKTRINGTGRGTLICTDSEGKPRSILLSDVLYVPKLTSGLISVRSLTRK
FT                 GMTVLFTGEQCRIKGENKEVIATASSGSLYKLHTTEKALKGLFQTHHEKCI
FT                 HSLHRRFGHRECGVIEKMCKESGLKVKDCRIKSKCEICLKSKMSRKPFPKK
FT                 SFSETSEILQLIHTDISGPFGCTVSGYKYYMCIIDDYSRMTFLYLLKHKSE
FT                 AEDKIREFVAFCKTQIGKTPRVIRSDNGGEYTGNQLKNFLKREGIVSQLTA
FT                 PYSPQQNGVAERKNRYIQEMVRCMLADAKMEKKFWGEAALTATYIQNRLPT
FT                 TATGMTPYERWYGQKPSYDHFRIFGCEAWVHIPKERRNKMNSKAERLRFVG
FT                 YSKEQKAYRFVNEDTSKIVISRDAVFKENFNHPSWNEDILKKNKMRNQDHD
FT                 IGETDDISDVDSCVSNESDAVSDDAFEDANGVFPSESEDLPSTTDRPTREN
FT                 RGKPPAYLDDYIVGIAKSEDIEPTSWQEAMKSSHHDEWKEAMDAEMFSHEK
FT                 NSTWEVTELPPDKKAIGCRWVFKLKKDELGNVVRFKARLVAQGFNQQYGVD
FT                 YDETFAPVTRFNTIRVFLTICGRDRLIAKHLDVATAYLHGDIKEEIYMRQP
FT                 PGYSLTGQGTKVCKLKRSIYGLKQAARCWNQKLCGVLESIGFKASVTDPCL
FT                 FMRIKDNSKMYLVTYVDDLLVACKNENEIDNVYTELKKHFEINMLGDVKNF
FT                 LGVQIIKNQDGILSLSMTRHIDELALKFGLEKAKVARTPMDSGYLKCTDRQ
FT                 DMFEDNNKYRSIVGSLMYIANCGRPDIAASASILGRKLECPSKTDWVAAKR
FT                 VVRYLIGTRDWCLRLGDGKARCVLEVYTDADWAGDHATRKSTTGYVLFYGG
FT                 GAVAWGSRRQNCVSLSSMEAEYVAITESCQETLWIRRLLRDLGEEQLGATF
FT                 IHEDNQGCISFAQSGKISKRSKHIETRNSLSVT"
XX
SQ   Sequence 4294 BP; 1454 A; 811 C; 1043 G; 986 T; 0 other;
     tgttaaataa caacgtttat ttaactcgcg tcaggcagca ctgccaaaac cggcagcact        60
     ggtcagtact tgttgtgtca agtcttaaca actgtgcggt cagtctttgc atagttctag       120
     aataaagacc gtgctctgta gagccaagtg ttttccgcgt ttgatttcga cctaaatatt       180
     aacaggttat gggcccagca gtgctaacgt gaaaacaaaa gatggattcg gtacgagtaa       240
     tagtgccaag gttgtcgaac gacaactacg catcgtggag tttcaaggta caaatgctct       300
     tgcagcgtga ggacgtgtgg catgcagtgg aaggcggtaa gccagagaca gttacaacag       360
     catggacaaa agcaaacacg aaggcgaaag ccataattgg tctgcatatt gaggatgacc       420
     aaatcacgct tatcagagat tgtgaagatg caaaaagtgc gtgggaagcc cttaaaaagt       480
     ttcatgataa cgtatcggag gtgtatttgt taaagaaatt aacatccctc acgctggcag       540
     aaggccagag catggaacag cacctgtcca ctttcagcga gttgattcaa agaatcggtg       600
     cctcgggcga atccattccc agaaagtggc aggtggcgat gcttctttgt tcacttcccc       660
     cctcgtacga cccgctcaca acggccatcg agctcacgaa tataaacgag ctaacagtgg       720
     agagcgtgaa gtcgaagttg ctggcagaag ccgaaaagag aaaagagagg gcgggaaaca       780
     tcgagagcga gaacgagaaa gcaatgagga gtgaagtttt tcgcagaaat aagaaaccgg       840
     cgggagtcgt ttgttataat tgtaacaagc cgggacacct gaagagaaat tgccgtctgc       900
     tgagaaatga tgaagcaaaa cgagtggaga acaacaacga aaagcccgca gaagagtgtg       960
     catttacaat aagccaggaa gaagctaccg aatggtacgt agatagtggg gcttcaaggc      1020
     atatgaccgg taacaaggaa tttttcaatc aattctcagc aacaaacatg ggcacagtga      1080
     cactcgcgaa cggccaaaag accagaatca atggaactgg tagaggcacc ctaatatgca      1140
     ccgacagcga aggaaaacca agatcgatcc ttctctctga tgtactttat gtaccgaaac      1200
     taacaagtgg actaatatcc gtaagatctc tcacgcgaaa aggaatgacc gtgctattta      1260
     caggtgaaca gtgcaggata aaaggagaaa ataaagaagt tatagccaca gctagtagtg      1320
     gaagtttata taaacttcat acaacagaaa aggcactcaa gggtttattt caaacacacc      1380
     acgaaaaatg tattcacagc ctgcacagga gattcggcca ccgagaatgt ggtgtaatag      1440
     aaaagatgtg taaagaaagt ggattaaagg taaaggactg cagaataaaa tcaaaatgcg      1500
     agatttgtct aaaaagtaaa atgtcaagaa aaccctttcc gaaaaagtcc ttttcagaga      1560
     ccagcgagat actgcagttg atccacaccg acatcagtgg accttttggc tgtacagtga      1620
     gtggatacaa gtactatatg tgcataatag acgattatag cagaatgacg ttcctatact      1680
     tgttaaaaca caaatcggaa gcagaggaca agattcgtga gttcgtagcc ttctgcaaaa      1740
     cgcaaattgg gaaaacacca cgagtgatac gttccgacaa tggaggagag tatacaggaa      1800
     atcagttgaa aaatttcctg aaacgcgaag gtattgtcag ccaactaaca gcaccatatt      1860
     cacctcaaca aaacggagtc gctgaaagga aaaatagata catacaagaa atggtgcggt      1920
     gtatgctagc agatgcaaaa atggaaaaga aattttgggg cgaagcggct ttaacagcta      1980
     cgtacataca aaaccgctta cccaccacag cgacgggaat gacgccttac gaaagatggt      2040
     atggacaaaa accatcttat gatcattttc gcatatttgg atgcgaggcg tgggtgcata      2100
     ttcccaaaga gaggcggaac aaaatgaatt ccaaagcaga acgcctaaga tttgttggat      2160
     actccaaaga acaaaaagca tatcgattcg tcaacgaaga tacaagtaaa attgtgatca      2220
     gccgcgatgc agttttcaaa gaaaacttta atcacccttc gtggaatgaa gacatcttga      2280
     agaagaacaa aatgcgaaat caagatcatg atatcggaga aaccgacgac atcagtgacg      2340
     ttgattcgtg tgtttcaaac gaatcagatg ctgtgagtga tgatgctttc gaagacgcaa      2400
     atggtgtttt tccttcggaa tctgaggatc taccatcaac cacagatcga ccaacacgag      2460
     aaaacagagg gaagccacca gcgtacttgg acgactatat agtcgggatt gccaagagcg      2520
     aagatataga accgacatcc tggcaagaag cgatgaagtc atcacatcat gacgaatgga      2580
     aagaggctat ggacgcagaa atgttttcac acgagaagaa cagcacatgg gaggtaaccg      2640
     agctacctcc tgacaagaaa gcgatcggat gcagatgggt cttcaaatta aagaaagatg      2700
     aactaggaaa tgtggtacgt tttaaggcca gattggtggc ccaaggtttc aatcaacaat      2760
     acggtgtgga ctatgatgaa actttcgcac cagtgacgcg tttcaacacc attcgtgtat      2820
     tcctgacgat atgtggaaga gaccgtttga tcgccaaaca ccttgatgtg gctacagcat      2880
     atctgcacgg ggacatcaaa gaagaaatct acatgcgtca acctcctgga tattcactga      2940
     ccggacaagg aactaaagta tgtaagttga aaagaagtat ctacggattg aaacaggcag      3000
     cgaggtgctg gaaccagaag ttatgtggtg ttctggaaag tattggattc aaggctagtg      3060
     taactgatcc atgtttgttc atgcgtatta aagataattc aaaaatgtat ctggtcacat      3120
     atgttgacga cttactagta gcatgtaaga atgaaaatga aatcgataac gtatatacag      3180
     aattgaagaa acactttgag ataaatatgt taggtgatgt taagaatttt ttaggagtac      3240
     aaatcatcaa aaaccaggac ggcattctta gtttgagtat gacacgtcat atagatgaac      3300
     ttgccttaaa gttcggttta gagaaggcaa aggtggcgcg tactcctatg gattcaggtt      3360
     acctcaaatg cacggatagg caagatatgt tcgaagacaa taacaaatac cgtagcatag      3420
     taggttcact tatgtacata gcaaattgtg gaagaccgga tatagcagca agcgcatcca      3480
     tactaggtag aaaacttgaa tgtccatcga aaacggattg ggtggcagcg aaaagagtag      3540
     tgcgttactt aatagggaca cgcgactggt gtttaagatt aggtgacggg aaggctcgat      3600
     gcgttttaga agtatatacg gatgctgatt gggcaggaga tcatgccacg agaaaatcta      3660
     caacaggcta cgtccttttt tatggaggag gagctgttgc gtggggtagt cgtcgacaaa      3720
     attgcgttag tctttcgtcg atggaggctg aatatgtagc tataaccgaa tcatgccagg      3780
     aaactttatg gatacgtaga ttactgaggg acttaggtga agaacagtta ggcgccactt      3840
     ttatacacga agataatcaa ggctgtataa gtttcgcgca atctggaaaa ataagcaagc      3900
     ggtccaagca catagagaca aggaattctt tgtccgtgac ttaatcgaca ggaaggaaat      3960
     tgaactaagg tactgtccta cggaggacat gatagcagac atattaacta aagccttagg      4020
     gaatataaaa cacaagaagt tctcattatc attaggacta acggatccag ttaattaaac      4080
     gttgaggagg agtgttaaat aacaacgttt atttaactcg cgtcaggcag cactgccaaa      4140
     accggcagca ctgccaaaac cggcagcact ggtcagtact tgttgtgtca agtcttaaca      4200
     actgcgcggt ctgtctttgc atagttctag aataaagacc gtgctctgta gagccaagtg      4260
     ttttccgcgt ttgatttcga cctaaatatt aaca                                  4294
//
ID   Adoxo       repbase;    DNA;    INV; 6982 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Adoxo.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6982
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-317, and
CC   6666-6982). ORF3 overlaps 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           880..1623
FT                 /product="Adoxo_1p"
FT                 /translation="MLCPGQYQERADDSSGDELIPSYLERTLEQSKKMNTE
FT                 QVARMEAKVQAVLEEQGRLFEERIASLTNQLSKARVSAPQIEIFQEIEIVS
FT                 GTRCDEPLDVAKSIPEFDGMIENYVSWRQAASAAYKVFEPYNGTSRHYQAV
FT                 AIIRNKVREPADAVLASFNTVLNFKAIIARLDFTYADKTPVHVIQQQLSTL
FT                 QQGNLPLIQYFDEVEKKLTLLTNKTLMTHDPVAAAILNEKFRNDALHVFVS
FT                 GLKKSLK"
FT   CDS           2362..5214
FT                 /product="Adoxo_2p"
FT                 /translation="MLESLTDIIGLDILKQVNAQIDLTNNVIKHDHGIEKI
FT                 EFTKCQQVNHIQINDADVPPAIRLTFDSMIKKMVKAFADVNESLPYNINTV
FT                 ATIPTDDEPVYSKLYPYPKGVSDFVNAEVKQLLANGIIRPSKSPYNNPIWV
FT                 VDKKSIDEAGHKQKRLVIDFRKLNHKTTDDKYPIPSISTILSNLGEAQYFT
FT                 TLDLKSGFHQIELVERDRKKTVFSVNNGKYEFCRLPFGLKNAPSIFQRAID
FT                 DVLREQIGRICYVYVDDVIIFSKTKEDHVRDIDWVLKNLRDAGIRVSQEKS
FT                 KFFKKSVEYLGFTVCRGGIQSSPDKIKAIKDFPPPKTLFALRSFLGLARYY
FT                 SCFIAGFANIARPLTDILKGENGKVSANYSRKVIIELSPEQYEAFDRLKNI
FT                 LASQDVMLSYPNYKKPFDLTTDASGYGLGAVLSQDGRPITMISRTLRGNEV
FT                 NFATNERELLAIVWALKNLRNYLYGVKNLNIYTDHQPLTFSVSDKNPNAKI
FT                 KRWKAFIDEHNANIIYKPGKENLVADALSRQNVNALEDSVDSDVATIHSEE
FT                 SLTYTIKATEKPVNCFRNQIILEEGTIPHQKTLILFKTKTRHILHFSDRST
FT                 LLQSIKDAVNADVVNAIHCELPILAFIQHGLIAAFPSTTFRFCKNLVTDIV
FT                 NPTEQREIATPEHNRAHRAAQENAKQILRDYFFPKMGHFTSEIAANCRICT
FT                 MSKHDRHPRKQEIGKTPIPSFAGEMLHIDVYSTAGKYFLTCIDKFSKFAVV
FT                 QPIRSRAIVDIKAPLLQLLNMFPKTKGIYCDNEKSLNSETIKSMLNNNFGI
FT                 VISNAPPLHSLSNGQVERFHGTLGDIARSYKLETQVEDTVENILLATIKYN
FT                 RSIHSVANERPIDIIHAASKDSTVQIKEKIASAQQKTLDQMNIKRVYKSYL
FT                 VGDRVWIKNNKRLGNKLSPLFTEGIVEADLGTTVLIKGRVVHKDNLK"
FT   CDS           5296..6864
FT                 /product="Adoxo_3p"
FT                 /translation="MTLTEATLRLNDYSHADYIPIVDGDVTIWDSYTYLGH
FT                 TTNLTSFETYIDETWKLIDKLPKDHMRQVLKTDVQHIATLITSLTVHHRQA
FT                 RSINMIGSALKAIAGTPDVDDWEQIKFKQNQLIESESRQIEINTKFQTRLN
FT                 DVSRAINNILKPDAEVEHFYATILAKNRMIITNLEDLILTVTLAKINLISP
FT                 LILDSIDIKELLNEQLTNISITDLLEVSHIKAFQNSELLYFLIKYPKPLLS
FT                 CKKIDILPVQHNNVILDLEEGNTVADCGTRTYAVRDCAATVSTTFCRRLQN
FT                 TSCAQQLVSGAVAHCATRPGHLAPVIVIGEGIAVINNATINVVDSTGHKQI
FT                 IAGTFLATYDDYVSLNDTRYVNHRGILKKKPAVSTSTVVNVTLFREHLSLP
FT                 FLHDLTMKNLRHIGDLRIGLSSRSYGGLALIALFLLLLGTWKLYQRRMRKK
FT                 KPEDAFQTSRGGVNTRKLKFADNAVTPDAVVTKLQPKPETRTRKLPDRPLQ
FT                 TLTQHSADFPAAAAASWSDGVGPKFQF"
XX
SQ   Sequence 6982 BP; 2359 A; 1600 C; 1389 G; 1634 T; 0 other;
     agttaacacg cgcaagctta agtttgctga caacgctgtt acgccggatg ccgtcgtgac        60
     aaagttgcag ccgaaaccag agactcgcac gcgtaagctg ccggaccgcc cgttgcagac       120
     gctgactcaa cattcagccg actttccagc ggcagcggcg gcttcgtggt ccgacggagt       180
     tggccctaaa ttccagtttt aattttgttc tccaattgtc aagtacaatg aataaaaaca       240
     aataaagtta ctttgccgag atataataaa taattcaaat taagatcctt tacttaaagt       300
     aaacggtctt gttaattggc gcccaaacgg aaaataaccc agttactcta ttatctaacc       360
     gaaataactc ttcgagctaa cgcaaagagt cccggtacgg ttcaataaag tgaataaata       420
     aatcaacaag tgaacagcta ctctattatc ttactgaaat aactcttcga gctaacgcaa       480
     agagttgcgg tacgaaaaaa aaaaaaacaa attttgtgaa aaaaaaaacc gcaaaaaaaa       540
     attagtgcaa aaatagtgca aaaaatacgc actcacaata cacgaaacca aaaaattaag       600
     acccccagcc aaaagagctg aacgaattaa atcaacaata cgagcggccg gcgggaaaca       660
     gcatatcgca gcggagttag aatttcatgt caaaaaaaat gtaagtgaga tgttcatttt       720
     tatttaaaat aaagtaaata aaatactcat tgctgtctag tgtgagattt cagtgtttat       780
     taaaacaaac ttaagtaaat ttctgcctgt tgcaatagag tgctgaagaa cctctataag       840
     cctaaacaaa aattaattcc gaaacgattt gaatctttta tgttgtgtcc ggggcaatac       900
     caagaaaggg cggacgacag tagtggcgac gaactaatac cctcatactt agagcggact       960
     ttagagcaat caaaaaaaat gaatactgaa caggttgccc ggatggaggc aaaggtgcag      1020
     gcagtccttg aggaacaagg ccgcttattt gaagagagaa tagcctcact gacaaaccag      1080
     cttagtaagg ctagagtttc tgcaccacag atagaaattt tccaagaaat tgaaatagtg      1140
     tcagggaccc gctgcgacga gcccttagat gtagcaaaat ccatccccga gtttgacgga      1200
     atgatagaaa actacgtttc gtggaggcaa gccgcttccg cagcctataa agtcttcgag      1260
     ccatacaacg gcacctcaag acactaccag gcagtagcta taatcagaaa caaagtaagg      1320
     gaaccagcag atgctgtgct ggcctcattc aacacagtgt tgaattttaa agccattatt      1380
     gctaggttag atttcacata cgcggacaag acaccggttc acgtaatcca acagcaacta      1440
     agcacgcttc agcagggcaa cttgccacta atacaatatt tcgacgaagt cgaaaaaaaa      1500
     ctcacactat tgacaaataa aacactaatg acgcacgacc ccgtcgcagc agctatatta      1560
     aacgaaaaat ttagaaacga cgcgcttcac gttttcgtct caggattaaa aaaatctttg      1620
     aagtaggcgg tcttcccggc gcaacccata gacctcccct cagccttagc tctagctcaa      1680
     gaggccgaat caagcaacga aagaggcatt ttcgcaacaa attttgcaaa acaccttgag      1740
     gaaaaacccc aaaaacaaaa ttcgcaagtc tcagaactgg cgtcagaacg cccaacaggc      1800
     aaaggaagaa aatcctcaaa acaggaatcc ctacttccaa aagaaccaaa aagatagaaa      1860
     tgaccagcaa aacccaaata gcacaaaaca gcgctttaac aaccaaaagt tccaggggcg      1920
     agtccccaag ccaatggagg tggatccctc ctcgcgctat aggcaacccg cacagggcta      1980
     caggaacaat cacatttacg tcgatcagtc catgaggacc caacaaaacc tgaatcatct      2040
     accccaagaa gatagtagcg gtgactacga gtcacggtca cagcatgaaa cgacacaggt      2100
     tgaggacgat ttgtccggag ccgaaagctg taatttttta gcggaagctc cctgcttccg      2160
     ttcataaaac gaacggttgc agggcgaatt atcagacttc tgatagacac aggggcctca      2220
     aaaaattata taaaacccct tcccgaactg gcacattggg tgtcagttga cagccctttt      2280
     caagtcaaat caattcatgg gcacactaag atcgagcaga aatgcctcat ccaccttttc      2340
     gatgtaaagt cctatttttt catgctagag tcacttactg acattattgg ccttgacatc      2400
     ttaaaacagg tcaatgctca aatagatctg acaaacaacg tcattaaaca tgaccatggg      2460
     atagaaaaaa tcgagttcac caaatgtcaa caggtgaacc atatccaaat taatgacgca      2520
     gatgtccctc ctgctatcag actcactttt gatagtatga taaaaaaaat ggtaaaggca      2580
     tttgcggacg ttaatgagtc cctaccgtac aacataaata cggttgccac cataccaacg      2640
     gatgacgaac cagtttactc aaaactgtat ccgtatccaa agggcgtgtc tgactttgtc      2700
     aatgcagaag ttaaacaact tctagcgaac ggcataatac gaccgtcaaa gtctccttac      2760
     aataacccga tatgggttgt cgacaaaaaa agcatcgacg aagcgggtca caaacaaaag      2820
     cgcctggtta ttgattttag gaaactaaat cataagacaa ccgacgacaa ataccctatc      2880
     ccatccattt cgactatatt gtcaaatttg ggagaggctc agtattttac tacgctggac      2940
     ctcaagtcag ggtttcacca gatcgaattg gttgaaagag acaggaaaaa gacagtgttc      3000
     tctgtcaaca acgggaagta cgagttttgt agactcccct tcgggctaaa aaatgcccca      3060
     agtatttttc aacgagccat tgatgatgtg cttcgcgaac aaattggtag gatatgttat      3120
     gtttacgtcg acgacgtaat aattttctcc aaaaccaaag aagaccacgt cagagacatt      3180
     gactgggtct tgaaaaacct tagggacgca ggcatacggg tgtctcaaga aaaatccaag      3240
     tttttcaaga aaagcgtgga atatttggga tttacagtgt gcagaggcgg gattcagtcc      3300
     tcgcccgata aaattaaggc tattaaggac tttcccccac caaaaacact attcgctctt      3360
     aggtcatttt taggtctagc acgctactat agctgcttca tagcgggctt tgccaacatc      3420
     gcaaggcccc taacagatat cttgaaaggc gaaaatggca aagtaagtgc caactactca      3480
     agaaaggtga taatcgagtt gtcaccagag caatatgaag ccttcgatag gctaaaaaac      3540
     atactggcct cccaagatgt aatgttgtcc tacccaaatt acaaaaagcc ttttgacctc      3600
     acaacagatg cgtctggcta cggactggga gcggtactgt ctcaagacgg ccgcccgata      3660
     acgatgatat cgcgaacact gcggggtaat gaggtaaatt ttgccacaaa tgagcgtgag      3720
     cttctcgcca tcgtatgggc acttaagaac ctcagaaatt acttgtatgg tgttaagaat      3780
     cttaacattt atacagacca ccagccatta accttttcgg tatcggacaa aaacccgaat      3840
     gcaaaaataa agcgttggaa agcctttatt gatgagcaca acgcgaacat aatttataag      3900
     cccggaaagg agaatttggt agcagacgcc ctgtctcgcc aaaatgtcaa tgcactagag      3960
     gactcagtgg actcggatgt cgccaccatc cacagcgaag aatccctcac gtataccatt      4020
     aaagccacag aaaagccggt gaactgtttc cggaaccaaa ttattttgga agaaggaaca      4080
     attccccatc agaagacgct tattttgttt aagacaaaaa ctcgtcacat actacatttc      4140
     tctgaccgca gcacattatt gcaaagcatt aaagatgcag taaacgctga cgtagtcaac      4200
     gcaattcatt gcgagctacc catactggct ttcatccaac acggattaat cgcggcattc      4260
     ccttccacca cctttagatt ttgcaagaac ttggtaacag atattgtaaa cccaacggaa      4320
     cagagggaaa ttgcgacacc agaacataat cgcgcgcaca gagcagcgca agaaaatgcg      4380
     aaacaaatac ttagggacta cttttttcca aaaatgggtc actttacctc agaaatagct      4440
     gcaaactgta gaatctgtac tatgagtaaa catgatcggc acccaagaaa acaggaaata      4500
     gggaaaaccc cgataccgtc gttcgccgga gaaatgttgc atatagatgt ttactctact      4560
     gccggtaaat attttctaac ctgcatcgat aagttttcca agtttgcagt agtacaacct      4620
     atacggtctc gtgcaattgt ggatataaaa gctccacttt tgcaactttt gaacatgttc      4680
     cccaaaacaa agggaattta ctgcgacaat gagaaatcct tgaactcaga aaccattaaa      4740
     tcaatgctca acaataactt tggcatcgtg atttcaaacg ccccaccctt gcatagtctc      4800
     tctaatggac aagtcgagcg gttccacggc actcttgggg atatagcacg ctcttataag      4860
     ttggaaacac aggtagagga cactgtcgaa aacattctcc ttgcaactat aaagtacaac      4920
     aggtcaatcc attcggtggc aaacgagaga cccatagaca taattcacgc agcctccaaa      4980
     gatagtacag tccagatcaa agaaaaaatc gcgtcagctc agcaaaagac acttgaccaa      5040
     atgaatataa aaagagtcta taagtcgtat ctggtaggcg atcgggtttg gataaaaaac      5100
     aataaacgat taggaaataa actatcaccc ctattcacag aaggcatagt ggaagcagac      5160
     ctaggtacga cggttcttat taaagggagg gtggtccata aggacaatct taaataggct      5220
     tttaacgttt ggaaaatcat ttttaactaa ttacattttt ttaggttata tcttttcagt      5280
     ttaataatag caaccatgac cttgaccgaa gcgacattga gactcaacga ctactcccac      5340
     gcggactaca tacctatagt tgacggagac gtaacaatct gggactcgta cacttacttg      5400
     ggacacacga cgaacctgac atctttcgaa acttacatcg acgagacatg gaaactaata      5460
     gacaaactac ccaaagatca tatgagacag gtattgaaaa cggacgtaca gcacatagcc      5520
     accttaataa cttccttgac cgttcatcac cgacaagcac gtagcattaa catgataggc      5580
     agtgccctta aggcaattgc aggaacccca gatgttgatg actgggaaca aataaaattc      5640
     aaacaaaatc agttaataga atccgaaagc aggcagatag agatcaacac taaattccaa      5700
     acaagactca atgacgtttc aagggccatc aataacattt tgaaaccaga tgcagaggtc      5760
     gaacattttt atgcaactat tttggcaaag aatagaatga taattactaa ccttgaggac      5820
     ttaatcctta ctgttacact cgcaaaaata aatttaatca gcccccttat actagacagc      5880
     atcgacatta aagaattatt aaatgaacaa ctcaccaata ttagtataac cgacctttta      5940
     gaggtctctc atataaaagc ttttcaaaat tctgaattat tgtactttct gatcaaatat      6000
     ccaaaacctc tgttaagctg taaaaaaata gatattcttc ctgtccagca taataacgta      6060
     atattagatc tagaagaggg taatacggtg gccgactgcg gaacaaggac ctacgctgta      6120
     cgtgactgcg ctgctactgt gagcaccact ttctgcagaa gactacaaaa tacttcatgc      6180
     gcgcagcaac tggtatctgg agccgtcgca cactgtgcca cacgccccgg tcacctggcg      6240
     cccgtgatag taatcggaga gggcattgca gtaataaaca acgcgaccat taatgtagtg      6300
     gacagcactg gacacaaaca gataatcgcg ggaaccttcc tcgcgactta cgacgattac      6360
     gtctcactga atgacacccg ttacgtgaac caccgaggca tcctgaagaa gaaacctgct      6420
     gtatccacgt caaccgtggt caacgtcacc ctttttagag aacatctgag cctcccattc      6480
     ctacatgacc ttaccatgaa gaatctccgc catatcgggg atcttagaat aggattatct      6540
     tcacgatcat atggcggctt ggcactcatc gccctattcc tactcctcct gggcacctgg      6600
     aaattgtacc agcgcagaat gagaaagaag aaacccgaag acgcgtttca aactagtagg      6660
     ggaggagtta acacgcgcaa gcttaagttt gctgacaacg ctgttacgcc ggatgccgtc      6720
     gtgacaaagt tgcagccgaa accagagact cgcacgcgta agctgccgga ccgccccttg      6780
     cagacgctga ctcaacattc agccgacttt ccagcggcag cggcggcttc gtggtccgac      6840
     ggagttggcc ctaaattcca gttttaattt tgttctccaa ttgtcaagta caatgaataa      6900
     aaacaaataa agttactttg ccgagatata ataaataaat caaattaaga tcctttactt      6960
     aaaataaacg gtcttgttaa tt                                               6982
//
ID   AeBuster1   repbase;    DNA;    INV; 2650 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A hAT DNA transposon family from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; AeBuster1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2650
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2650
RA   Kojima K.K. and Jurka J.;
RT   "hAT-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >99% identity, and is ~100% identical to the
CC   original sequence in [1]. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           493..2409
FT                 /product="AeBuster1_1p"
FT                 /note="transposase."
FT                 /translation="MDKWLLKKPKSEDLEAEKKNNADIVAGPSGGGTRRKL
FT                 EEELPSTSAKKKTRQYDSDYLQYGFMEDLKDKFPRPQCVICLEVLANESMR
FT                 PNKLIRHLETKHPEFKDKTLDFFTAKVKALNCSRDTIQAYTKVSDKAMVAS
FT                 YHLSLKIAKSGKAHTIGENLILPALKETVSIMFGPKFAQEIESIPLSNNTV
FT                 ARRIEDLSGWVENELVERIKASTHFSLQLDESTDVEGLSQLIVFVRYFWKE
FT                 DVHEEMLFCEPIMRGTSDEIFDKLNSYIKANGLYWENCIGVCTDGARAMCG
FT                 KNSGVVTRILKLSPNASWTHCSLHREALVAKTLCDDFKNVLTTTVKIVNFV
FT                 KTKPLQSRLFEKLCEDMGSNFTSLLLHTEVRWLSRGKVLTRVVELREELAT
FT                 FLEGKENFSTLLRDKDFSLKIAYLSDIFQKLNHLNTYLQGSTSMDIFDVHD
FT                 KIRGFMRKLDLWSRNLKNGNYDCFDSLQTLIVEKQFKPSSTIINGILGHLK
FT                 SLKEKFGEYFDGEMKKTEKNLWIVDPFNQNEASTNISTKADEELIDLSENS
FT                 TLKINYDRKNILRFWISVRHMYPCLYEEAVKFLLPFTTSYLCEAGFSEMVA
FT                 IKTKYRNKLRLSPSLRLKLTGIEIDVSQVIDNNRKQSHPSH"
XX
SQ   Sequence 2650 BP; 833 A; 480 C; 556 G; 781 T; 0 other;
     catagattcc caaactgtgg gtcgcgaccc cctggggggt cgcgagacag ttcctggtgg        60
     gtcgcgagaa aaaaaaaatc aagtttgatt tttcacctcc actttcaaac agttctgtac       120
     attttggcaa tcaatttata tattccaatt ccattacaca ccaattcatt cattctttat       180
     ttttcgagta atgtaattgt gtttgtacca tgtacaatct atcatcactg aactgcgacc       240
     gctttgtttt cataaaagtg tgtgtgaaag caagcagcgt tattgttgaa taccaacata       300
     ccaatctagt tcactgtgtg ctttctttca gtgcccatat tcattcattt tgcgttgata       360
     ccaacaggtg gcttcattga gtcagttaat tgttcggatt ttactttgtt tctaaacgaa       420
     aattaatcaa caagtaagtt ttatttacat cggaaatcag aatatgcgat tcattatttg       480
     ataatttcag atatggataa atggttgttg aagaagccca agagtgagga tttagaagca       540
     gaaaagaaaa acaatgccga catagtagca ggtccttcgg gtggcggaac gcgaagaaaa       600
     ttagaggaag agttgcccag taccagtgct aaaaagaaaa cgcgacaata cgattcagat       660
     tatttgcagt atggtttcat ggaggatctt aaagataaat ttccacggcc tcagtgtgtt       720
     atttgtcttg aagtgctggc aaatgaaagc atgcgtccga acaaattaat ccgtcacctc       780
     gaaactaagc acccagagtt taaggataaa actcttgatt tttttactgc aaaagtgaag       840
     gcgctcaatt gttccaggga tactattcaa gcatacacca aagtatccga taaagctatg       900
     gtggcatctt atcacttaag cttgaaaatt gcgaaatctg gtaaggctca cacaattggt       960
     gaaaatttga ttcttccggc gctcaaggaa acggtgtcaa tcatgttcgg tccaaaattc      1020
     gcacaagaga tagaatcaat tccgttgtca aacaacactg tcgcaaggcg tattgaagat      1080
     ttatctggtt gggttgagaa cgagctggtt gaaagaataa aggcaagtac acatttttca      1140
     ctacagttgg acgagtcgac agatgttgaa gggttatcgc agctgatcgt ttttgttcgg      1200
     tatttctgga aagaggatgt tcatgaagaa atgttgtttt gcgaaccgat aatgcgagga      1260
     acaagtgacg aaatatttga caagttgaac tcttacatca aggccaatgg actttattgg      1320
     gaaaattgca ttggagtttg cacagacggt gcacgtgcta tgtgcggcaa aaacagcggt      1380
     gttgttacta gaattctgaa gcttagcccc aacgcttctt ggactcactg tagtctgcat      1440
     cgggaagctt tagttgccaa gacactttgt gatgatttca agaatgtatt gacaaccacg      1500
     gtaaaaatag taaatttcgt taaaaccaag cctctccagt ctcgcttatt cgagaaactt      1560
     tgtgaagata tgggtagcaa tttcacttca ttgttgctgc ataccgaagt ccgatggcta      1620
     tcacgaggaa aagttcttac gagagtggtt gagcttcgtg aagagttggc tacatttttg      1680
     gagggaaaag aaaacttttc tacgctttta cgagataaag acttttctct gaaaatcgct      1740
     tatttgtcgg acattttcca aaagttgaac catctgaaca cttatctcca aggatccact      1800
     tcaatggata tattcgacgt tcacgacaaa attcgaggat ttatgcgaaa acttgatttg      1860
     tggtctcgca atttgaaaaa tggaaactac gattgtttcg attctctcca aacattaatc      1920
     gttgagaaac agttcaaacc atcatctacc attatcaatg gtattctggg ccacctgaaa      1980
     agtttgaaag aaaagtttgg tgagtatttc gacggagaaa tgaaaaaaac cgagaaaaat      2040
     ctgtggatag ttgacccttt caaccaaaac gaagccagta ccaatatatc tacaaaagca      2100
     gatgaagaat tgatcgactt gtcagaaaac agcacactca aaatcaatta tgatcggaaa      2160
     aacattctgc ggttctggat cagcgtgagg catatgtatc cttgcctata tgaagaagct      2220
     gtgaagttcc ttttgccctt tacaacttca tatttgtgtg aggcaggttt ctcagaaatg      2280
     gttgccatta aaacgaagta tagaaacaaa cttcgattat ctccatcgct acggttgaag      2340
     ttgacaggaa ttgagatcga cgtaagccag gtcatcgaca ataatcgcaa gcaaagccat      2400
     ccatcacact aatgcgcatc gaacaacatt tttagtgaga aaaagaaatc tcgtgtttta      2460
     ttactacaac ttgtataatt tgtttaatag catttatgtg gaaaataaac atttttattg      2520
     ttattcaaca gttgtttttg atatcgaatt aaagagtatt gcgtatatta tccattttga      2580
     ggaggggggt cgccaaaaat acatcactcg gctagggggg tcgcgcatcc gaaaagtttg      2640
     ggaacctatg                                                             2650
//
ID   AeBuster3   repbase;    DNA;    INV; 3019 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A hAT DNA transposon family from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; AeBuster3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3019
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3019
RA   Kojima K.K. and Jurka J.;
RT   "hAT-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 7
CC   sequences with >97% identity, and is ~100% identical to the
CC   original sequence in [1]. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1038..2813
FT                 /product="AeBuster3_1p"
FT                 /note="transposase."
FT                 /translation="MDKKRKYCEEYIKYGFTVLTINGIDKPQCVLCNIVLS
FT                 VEALKPSKLKRHLETKHPEHIQKDTAFFQRHETGLIRSRFGATGSIQQQNT
FT                 AVLQASYEAALEIAKNKKPHTIGETLIKPSMLKMVSLVLGEASAVKMRQVS
FT                 LSNSSVQRRIADMSEDVKIQILEEIKQSPLFAIQLDESTDVSSCAQLLVFV
FT                 KYVHLDNLKEEFLFCSDLETTTKSDDIMAKVKTFFDSNGLQWEKLCGVCTD
FT                 GAPAMLGSKSGFQKKIKELAPQAKGVHCMIHRYALASKTLPKDLQKVLDSV
FT                 IKIVNHIKSGALNTRLFKELCKEMNSDHETLLFHTAVRWLSKGNVLNRVFE
FT                 LKHEIKTFLETQGKTDLLGNFYETGWNKRLAYLADIFDQLNSLNLKLQGKQ
FT                 TNLILFQDSLQAFVAKIKNWRRKVKANNVAMFERLCSMLDEEAEEIETELK
FT                 TEIIAHLDSLDEQFERYFPELTQEEAALVRNPFSPSLDVASLPDRIQDEYL
FT                 DLRNDSSVRDLYNEKNLNQFWCTMYRSYPAVSLQALKILVPFASTYLCESG
FT                 FSCLLQIKTKARNRLNVEDDMRLALSDTQPRITKLVSQMQTQQSH"
XX
SQ   Sequence 3019 BP; 951 A; 595 C; 595 G; 878 T; 0 other;
     cagcgtttct caaccggtgg tccgcggacc cctggggggc cgcggagcct gatcaggggg        60
     tccgcgaagc cttttgacgc gaccattcct tttaagcaac aaattttccg caagatattt       120
     caaaaattga aaaaaaataa tttaaatgca cttataaatt tgatacaata ccatttttta       180
     acaatatttg caaaatttgc agtattctat ccaatattaa taagattttt gcaaaccaga       240
     aaaatttaaa atcgatggaa actttcaatt aagctttccg tcctcggctg gtcaacctta       300
     aaattaaaca gtcgttggtt aattaatgtc cgtgtcctct tcaattatta aatttcagac       360
     aaatgttcct ttctggcatg cataacatca ctcaaccaag gtgtcagtag gacgcgtgcg       420
     taaaaaccga attatgattc agacgacatg gatcaaaaga tttaactttc attcacgttg       480
     ggcttgccgt ttttccgttg ttgtcgcaat gccgtttcat tatgtttggg tcttaaccaa       540
     gcagtcatga ttgctatgaa tgaagatctt ttgttttgtt tatattctta aggtgaatta       600
     gcgcaagagc gtatttttcg acgcagcgtt ttttttttaa cttttcaatc atatctgttt       660
     gcaatacaat acatattaag ttttcaattt gcaaaaaaaa cacacatgct atttttgtgt       720
     caaacttcat tgataacatt tgaggtattc atgagatttt ggtaattgaa ccggcacagt       780
     ggctttgtcg taaatgctgt cccgtatccc cttaatgaag aaatgtcatt cacaaaactg       840
     gccggtcgag ctttgcatta ttcgttttcg ctctttgcaa aattcgtagt gaaattaacg       900
     tttgtaatca atttgcttcg ttgtatttta aacgtttgag ctcgagttcc acggtaattt       960
     tatcaattcg tgtgggtaaa acactttttg atgaattgga acagctacaa gtgttattta      1020
     ttacaggcgc cgcaaaaatg gataagaaaa gaaagtactg tgaagaatac atcaaatatg      1080
     gattcacggt tcttaccatc aatggaatcg acaagccaca atgtgtattg tgtaatatcg      1140
     tgttaagtgt tgaagcactg aaaccatcga aactgaaacg gcatttggag acgaaacatc      1200
     ccgagcacat tcaaaaggac acggcatttt ttcaacgcca tgaaaccggc cttatacgat      1260
     cgcgattcgg cgccacaggc agcattcaac aacaaaatac cgctgttctt caggcgtcat      1320
     atgaggcagc attggaaatt gcaaaaaaca aaaagccaca cacaattggc gaaactctga      1380
     tcaagcccag catgctgaaa atggtaagtt tggttcttgg cgaggcaagt gctgtcaaaa      1440
     tgcgacaagt atctttgtca aatagttctg tgcaaagacg aatagctgat atgtccgaag      1500
     acgttaaaat tcaaatcttg gaggaaatca agcagtcccc tttattcgca atccaactgg      1560
     atgaatctac ggatgtaagc tcatgcgcgc agctgttggt gttcgtaaaa tacgttcacc      1620
     ttgataattt gaaggaagag tttcttttct gcagtgattt ggaaactact accaaaagtg      1680
     atgacattat ggctaaggta aaaacctttt tcgattccaa tggtttgcag tgggagaaac      1740
     tttgcggggt ttgtactgat ggtgctccag ctatgcttgg atctaaatca gggttccaga      1800
     aaaaaattaa agaactcgct ccacaagcta aaggtgttca ttgcatgatt caccgatatg      1860
     cccttgccag caagacactg ccgaaggatt tgcaaaaagt gctggattcc gtaataaaaa      1920
     tcgtaaacca tatcaagtct ggagcattga acactcgttt attcaaagaa ctctgtaagg      1980
     aaatgaactc agatcacgaa actcttcttt tccatactgc tgttcgatgg ttgtcgaaag      2040
     gcaatgtcct taatcgtgtt ttcgaattaa aacacgagat caagacattc ctagaaacgc      2100
     agggaaaaac ggatcttctt ggtaacttct acgaaaccgg atggaacaag cgtctcgcct      2160
     atctggcaga catctttgat caactcaatt cattgaactt gaaactgcaa ggaaaacaaa      2220
     ccaatcttat ccttttccaa gacagcctgc aagcatttgt ggcaaaaatc aaaaactggc      2280
     gtcgaaaagt aaaggctaat aatgtcgcca tgtttgaaag actttgcagt atgcttgatg      2340
     aagaagctga agaaatagaa acggaactca aaacagaaat cattgctcat ctggattcac      2400
     tggacgagca attcgagcgc tatttccctg aattgacgca agaagaagct gctttagttc      2460
     gaaacccgtt ttctccttca ttggatgtgg caagccttcc tgatagaatt caggatgaat      2520
     acttggacct acgtaatgat tcctcggttc gtgatttgta caacgagaaa aacttgaatc      2580
     agttttggtg tactatgtac agatcgtacc ccgcagtctc cttgcaagct ctgaagattc      2640
     tcgttccatt tgcatcaacc tacctctgtg aaagcggatt ttcatgccta ctccaaatca      2700
     agacaaaagc cagaaataga ctgaatgttg aggacgacat gagattggcg ctgtcagata      2760
     cgcaacctcg gatcaccaaa ctagtatcac aaatgcaaac tcaacaatcg cactaaaaat      2820
     ggttcaatga tctcaaatgt aatattcctt gaattgaatt gatgtttaaa tatacgccta      2880
     ataaaaataa aacagagtaa taaatcaaac gtgtgctatg tacttttatt gaattctgtc      2940
     tctgaaaatt ttaggggtcc gcagcttaat tgaaaatacg tcaaggggtc cgcgatccca      3000
     aaaaggttga gaaccactg                                                   3019
//
ID   AeHerves2   repbase;    DNA;    INV; 2855 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A hAT DNA transposon family from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; AeHerves2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2855
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2855
RA   Kojima K.K. and Jurka J.;
RT   "hAT-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 3
CC   sequences with >98% identity, and is ~99% identical to the
CC   original sequence in [1]. 8-bp TSDs. 13-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           696..2615
FT                 /product="AeHerves2_1p"
FT                 /note="transposase."
FT                 /translation="MWLIFTRIMAGRGRVTSGIWYHFSKLENGKGKCRYCH
FT                 VLIAMASGSSANLKRHLKTKHPMVPVEIGDKNDTSNTASETVPSSSQKPIA
FT                 NIIQQTSTMNTEECARPFGDSNATEVKQPFAQKSMTNFVEIIKPLSVQKQR
FT                 SIDVQLLKTICKEYHPLSLVEGTEFKKFVNLLCPSYTLPSRKTLTYSLMPT
FT                 VYEDVLAKVKADLDTTLAVSITCDGWTSSNNEGYYAVTAHFFDKCVKLKSC
FT                 LLECSEFKDRHTGENIATWITRVLKSFGLESKVVAIVTDNAANMKSAASIL
FT                 KMNHLSCFAHTLNLLVQGAIASSIQSIVDKVKSIVQYFKKSSYALEKLHDM
FT                 QRKLDEAALKLKQDVPTRWNSTYDMLDRALKNKNSIISTLALLNNKLALNA
FT                 DDWKVIEASVEVLRIFNEVTVEISSEQNVSISKTLVLTQIMKRRVQKFVAD
FT                 DILPSEVVKLVKNLKDGLIKRFEMRSKNELISQAVILDPRFKKQGFDNEDD
FT                 YKSAYDALLSQIRDLQEVKSIGEECSGEADVSERTSKSSLWEEFDDSVSKI
FT                 QFKQDPDAVCSIELDKYIAEPILPRTNDPLIWWMERKCIYPNLFSIMQKRL
FT                 CIPGTSVPCERVFSKTGQICNEKRSRLKAKNVSKIVFIHQNL"
XX
SQ   Sequence 2855 BP; 918 A; 550 C; 593 G; 794 T; 0 other;
     tagagatggg caatccgttc gcgaactgtt caaaagaact agttcttcca agagaatgag        60
     tgaactatcg ttctttttga aggaacggta gttctccgct ctcccaaaaa caaacgagct       120
     gaatggttta aggaaccgtt ctcagataat ttggtgcgta tgaacgggtt ctagaaggat       180
     gaatgctagt agaataaact tcgtttcact cacattcgtc aacaagtttt cgaaaccgtt       240
     cttcgcttgc tctcacaaag agtacagcga agaacgatac ataaatagat cgaaatagag       300
     ctaatagcca tacgatcagc acacacacta caacgtaggt tgtcatgttt gtttggtgat       360
     tataatgtca aagcgaaata attttgtttt gaaaacgatg cactactaca aacaactgtt       420
     tgcaacctct attctgcctc tcactcgctc tcagagagat ttctgtattg aagagtgcac       480
     ctctctgttt acttttctcc catttcgact tttgacatcc ttcgaccgtg attcaataaa       540
     gttttctggt acaagttccc attgaaaaac ctgttatttt cataaataat ctgcgtattt       600
     cactgatcct gctgaatttc ccaatctttg agagtgggcc ctcgacaggt aggtggaaaa       660
     aacctatttt gagcgatgat ttgcttcaga ttaaaatgtg gcttattttc accagaatta       720
     tggctggccg tggcagagtt accagtggta tatggtatca tttcagcaag ctcgagaacg       780
     gaaaagggaa atgccgctat tgccatgtat taatagctat ggcctcggga tcaagcgcga       840
     acctaaaaag acatttgaaa accaagcatc cgatggttcc tgtggagata ggggacaaaa       900
     atgacacctc caacactgca tccgaaacgg ttccttcgtc gtcgcaaaag ccaatcgcga       960
     atatcattca gcaaacatcc acaatgaaca cggaagagtg tgcaaggcct tttggtgatt      1020
     cgaatgccac ggaagtgaag cagccatttg cccagaaatc aatgaccaac ttcgtagaga      1080
     tcatcaaacc tctttcggta cagaagcaac gttcgatcga tgtgcagttg cttaagacga      1140
     tttgtaagga ataccatccg ttatctctgg ttgaaggtac ggaattcaag aagttcgtga      1200
     atttgctttg tccgtcatac actctcccga gccggaaaac attgacgtac agtttaatgc      1260
     ctacagtgta cgaagatgtt cttgccaaag ttaaagccga tttggacacc acactagcag      1320
     tgagcatcac ttgcgatgga tggaccagta gcaataacga aggatattac gctgtcacag      1380
     cacacttttt tgacaaatgt gtgaaattga agtcatgtct tctggaatgc tctgaattta      1440
     aagacaggca cacaggtgag aatattgcaa cttggatcac gcgggttttg aagtcgttcg      1500
     gtttagaatc aaaagttgta gctatagtca cggataatgc ggcgaacatg aaatccgcag      1560
     cttcgatttt gaaaatgaac cacttgtctt gctttgctca cacacttaat ctgctggttc      1620
     agggtgcaat tgcgagctct attcaaagca tagtagacaa agtgaaaagt attgtacaat      1680
     acttcaaaaa aagttcatat gctctcgaaa agttgcatga tatgcaacgt aagttggatg      1740
     aagctgcatt aaaattaaag caagatgttc caacgcgttg gaactccacg tatgatatgc      1800
     tagatcgcgc tttaaagaat aaaaattcta taatttcaac tcttgcactt ctaaataata      1860
     agttggcttt gaacgctgac gactggaaag ttatcgaggc ttcggttgag gttctgagaa      1920
     ttttcaatga ggtcactgtg gaaatatctt ctgaacaaaa tgtttcaatt tcgaaaactc      1980
     tagttctaac tcagattatg aagcgacggg tccaaaagtt tgtagcagat gacatccttc      2040
     catcggaggt agttaaactt gtaaagaacc ttaaggacgg cttgatcaaa cggtttgaaa      2100
     tgagatctaa aaacgagttg atttctcaag cagtgatact tgatcctcgt tttaaaaagc      2160
     aaggattcga taatgaagat gattacaaat cagcgtatga tgcactatta agccagattc      2220
     gtgatctaca ggaagttaag tcaatcggcg aggaatgttc cggggaagct gatgtttcgg      2280
     agcgcacatc gaaatcgtca ctttgggaag agtttgatga ttctgtcagc aagatacaat      2340
     tcaaacaaga tcctgatgct gtctgtagta tcgagctgga caaatacatt gcagagccca      2400
     tcttacccag aaccaacgat ccgttgattt ggtggatgga gcgtaaatgc atttacccaa      2460
     accttttcag cattatgcag aagcggctgt gtattcctgg tacttccgtt ccgtgtgaac      2520
     gagttttctc caagacggga caaatttgca acgaaaaaag aagcaggttg aaagcaaaga      2580
     acgtttcaaa aattgtgttc atccatcaaa atctttgaac aagatgtatg aaaattataa      2640
     caatactggt tgaattctta ataaaaagca aatataaaac aaataaaact attattattt      2700
     taaaacgtta tatctgaaac aaaacagttt gaatatacaa aaaaaaaaaa gcaaaaatta      2760
     atcgaacgga agaacggttc aaatgaacta gttcttttcg aagaactgct cagctaagaa      2820
     cggttcaacg aaaagaactg ttttgcccat ctcta                                 2855
//
ID   AeTango2    repbase;    DNA;    INV; 1662 BP.
XX
AC   .
XX
DT   12-OCT-2010 (Rel. 15.10, Created)
DT   12-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Mariner/Tc1 DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Tc1_Ele2;
KW   AeTango2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1662
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1662
RA   Kojima K.K. and Jurka J.;
RT   "Mariner/Tc1-type DNA transposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (27-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~90% identical to consensus. This consensus
CC   is ~99% identical to the original sequence in [1]. TA TSDs.
CC   225-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           381..1388
FT                 /product="AeTango2_1p"
FT                 /translation="MGGGKISMQIRNLILRDAKRNLSQRKIAEKFGVSRGA
FT                 VQKIILKHQKFGSVADRTGRGSKRKSSARTDDLIIRQIKKDPRTTVRAIKE
FT                 RLDLTISERTIRRRMAERELKSYFAKKRPMISKVNKHKRLLFARNHINKPL
FT                 EFWKHVVWSDESKFELFNKKRRLRVWRKSDEGLQDRHLQPTMKHGGGNVMV
FT                 WGCFSWFGVGNLAQINGIMTAEGYIDILCENLEESMLKMGLENNNTFQQDN
FT                 DPKHTAKKTRAFFRSTRIKSMEWPPQSPDLNPIENLWAILDNKVDKTGVTN
FT                 KQAYFAALQKAWDDLDQQHLRNLVESMPKRLQLVIEAKGGHIEY"
XX
SQ   Sequence 1662 BP; 550 A; 315 C; 354 G; 443 T; 0 other;
     cagtgaccgg cacaaaaaaa gatccacccc aagcatatat cgaaatttgc acaaacttgt        60
     gatttttttt aaacttatca taatttcaat taatgtaaaa gtcacatata cctccaaact       120
     tcatttcaga ataataacat gattgatttt gttttcgaaa aataaaaaat aataagttta       180
     ctctttactt agtttttttt agtatgacag aaaaaaagat ccactaccgt aaaattaatt       240
     tttcgtgtaa tttacgttgg tgagcccccg gttttgacac ttcattgttt ttgtttgtcg       300
     acaacataaa ttgtagagct cttaagtcaa ctgcaagtgt tcaaaagaat tggttttgaa       360
     gctgtggaag ctgtggaaaa atgggcggag gcaaaatttc aatgcagatc cgaaacctta       420
     ttttgcgtga tgctaagcgc aacctatcac aacgaaaaat agcggagaag tttggagtga       480
     gccgtggcgc agtgcaaaag ataatactga agcaccaaaa gttcggaagt gttgctgatc       540
     gaacgggaag aggatcaaaa cgcaagagca gtgcgcgaac cgacgacctg atcatccggc       600
     aaatcaagaa agatccacgc acaaccgtgc gtgcgattaa ggaaaggcta gatttgacga       660
     tttccgaacg tactattcga cgacgcatgg cagaacggga attgaagagc tatttcgcta       720
     aaaagcgacc aatgatcagc aaggtcaaca aacataaacg actcctcttc gccagaaacc       780
     acatcaacaa gcccctggag ttctggaagc atgtcgtctg gtcagacgag tcaaagtttg       840
     agctcttcaa caagaaacgg cgactaagag tttggcggaa gagcgatgag gggctccagg       900
     atagacatct ccaaccaaca atgaagcatg gcggtggaaa cgttatggtt tggggctgtt       960
     tctcgtggtt tggcgtggga aacttggccc aaatcaacgg cattatgacg gcagaagggt      1020
     acatcgacat attgtgtgag aatctggagg aatcgatgct taaaatggga ctggagaata      1080
     ataacacctt ccagcaagac aacgacccca aacacacggc gaaaaaaaca cgagcattct      1140
     tccggtcaac ccgcatcaaa tccatggaat ggccacccca gagccccgat ttgaatccca      1200
     ttgaaaatct ctgggcaata cttgacaaca aggtggataa aactggtgtt acaaataaac      1260
     aggcgtattt tgcagccctg caaaaggctt gggacgattt agaccaacag cacctccgaa      1320
     acctcgtcga aagcatgcca aagcgtcttc agttggtgat tgaggccaaa ggaggtcata      1380
     ttgagtacta atgatttgtt ttgatttttt ttgttattgt tttgtgaaaa aacatgaagt      1440
     ggatcttttt ttctgtcata ctcaaaaacc taagtataaa gcgatatgat tttttaaatt      1500
     ttctttttaa taaaaatcaa tgatgtttct atgacaaaat gaagtttgga agtttacttt      1560
     tctgttacat aaactgaaat aaaaataagt ttcaaaaaaa tcacaagttt gaagcaattt      1620
     tcttataaac tgagagtgga tctttttttg tgccggtcac tg                         1662
//
ID   Ag-CR1-22   repbase;    DNA;    INV; 4007 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Ag-CR1-22.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4007
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4007
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..833
FT                 /product="Ag-CR1-22_1p"
FT                 /translation="KEIRTGLSQLNESQKRTPLSSHPPAKLRRVLPAKRLF
FT                 SELVSATNTSPAISLVAKRTTNINNNNINNNIAVPSLAEHNNINITNNITS
FT                 RQPIAIYGTDNDSPNLPTVQNRFVPKMWLHLANIAPGTSCEQVVESVKRRL
FT                 ATTDVIAFSLMGKNFDTTLARPMSFKVRIPAHLRETALSSSVWPSNLRVRE
FT                 FILRDNRPASSHPLACLTPMNAHETPLXSINAVPIDNIPKPAEQTINEKPN
FT                 SSSPSNVQPIVHNMEHSPIPADRTAQNNDVHHEHSS"
FT   CDS           837..3896
FT                 /product="Ag-CR1-22_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SLRTQEASASRYSHTNTSCNDHARTNTATHLKMFSVR
FT                 DIKNISHAKPTDTALKPCDIHFHYQNVRGLRTKLTEFGLNTLDAKYQIIIL
FT                 TETWLDNSIPSSLLFDPGYSVYRCDRSLSNSMHTRGGGALIACSSLLNTRE
FT                 LTLPRNSLEQVWVTVRLSSCTIFIGTVYIPPNRANDTDTLTSVIESVSAIV
FT                 NHAKTNDLIFLFGDFNFSAVSWSLAQQTFGHSSSFAHYVANSSSSVRSRFL
FT                 DEINASDLYQISCIKNSLNRQLDLVFANFIAATYCIDLHPCPTPLVSPDLY
FT                 HPAIDLTVRIPSTMPNPTLTQASRPRMNFYKTNFTRLDELITNFNSQFRIS
FT                 QFNSVDEALSIFIRFLLSSFDSCVPIITPKSGPAWSDRHLKKLKRAKEAAL
FT                 KKYTKYRSPVNKSILNETTRLYRSYNKIRYGGYLSRLEKNFIKRPKALWSF
FT                 RKKHNSTNVTPKSIYHNDRAGSTASDMCDIFACRFEEAYTISTTDDNIITN
FT                 ALINTPNDVIDLNLTNISQESVLNVLKAVKPKASPGPDGIPAIILSRCCES
FT                 IAPIFTKIFNFSLQQGEFPSIWKSSWIVPIFKKGDKEDAANYRGITSLSAG
FT                 AKVFEKVIQTSLLTASYHYISPQQHGFVPKRSTITNLVDFTSQCLRNMDSR
FT                 IQTDAVYMDLKAAFDSIDHNILLAKMNKLGLGRNLICWLESYLVNRSYAVS
FT                 FSRCHSRSFIASSGVPQGSNLGPLLFVLFINDLSYVVPAANHLMYADDIKI
FT                 YMTIKNDTDHSELQQYLLDFHQWCNRNRLSLCIEKCRVISFTRAREIKNTS
FT                 YTVNGLPIERTNTMKDLGVILDSKLSFDQQTEEVITRGNQLLGMLFRITRD
FT                 FKDPVCIKALYCGIIRPVLEYACVVWKPSTQRLSERMESIQRRLSRYATRL
FT                 LPWPPGSQLPPYESRLLLLGLQPLHIRRRTAQQLFVAGLLQNNIDCPSLLQ
FT                 QLNFYAPAVQLRSRPLLALNRSRTGYGSRDPLNSMIRVFNEVRHLFDFGTS
FT                 VQSFKNCLRSELLR"
XX
SQ   Sequence 4007 BP; 1212 A; 974 C; 714 G; 1104 T; 3 other;
     caaaagaaat tcgtactggt ctatcgcagc ttaatgaatc gcagaagaga acaccactga        60
     gcagtcaccc tcctgccaaa ttgcgcagag ttttaccagc gaagagatta ttctccgagt       120
     tggtcagtgc tacaaacact tcacctgcta tctcgcttgt cgccaaaaga acaacaaaca       180
     tcaataacaa caatatcaac aataacatag ccgtaccgtc actagctgag cacaacaata       240
     ttaacatcac aaataacatc acttctcgcc agccaattgc tatttatggc acggataacg       300
     attctccaaa ccttccaacc gttcaaaacc gctttgtacc caaaatgtgg cttcatttag       360
     ctaacattgc tcctggcact tcctgtgaac aagtcgtgga atctgtgaaa cgacggctgg       420
     ccacaaccga cgtcattgca tttagcttga tgggcaaaaa tttcgacact actttggcta       480
     gaccgatgtc gtttaaggtt cgcatcccgg ctcaccttcg tgaaactgcg ttatcgtcct       540
     cggtttggcc ttctaatcta cgtgtacgtg aatttatact acgtgataac cgcccagcmt       600
     catcccatcc tttggcttgt ctcacaccga tgaatgcaca tgaaacccca cttmaaagca       660
     tcaatgcagt gcctatcgat aatattccga aaccggcaga gcaaaccatc aatgaaaagc       720
     caaatagttc atcacctagt aatgtacaac caatagtgca caatatggag cattcaccta       780
     tcccagctga tcgtacggct caaaacaatg acgttcatca cgaacacagc tcatgaagct       840
     tacgcacaca agaagcatca gccagtcgct attcgcacac taacacttca tgtaatgacc       900
     acgcacgcac taacacagca actcacttga aaatgttttc agttcgcgat attaaaaaca       960
     tttcacatgc caaaccgact gacactgctt tgaaaccatg tgatatacat tttcactacc      1020
     aaaatgttag aggactacgt accaaactca cagaatttgg attgaacaca ttggacgcta      1080
     aatatcagat aataatactc accgaaacct ggcttgacaa ttcaattcca tcatcgctac      1140
     tgtttgaccc gggctattcg gtgtatagat gtgatcgtag cttgtctaat agtatgcata      1200
     ctcgtggtgg tggcgcactg atcgcatgct catccttatt gaacacccgt gaactcactc      1260
     tacctcgtaa ctcacttgag caagtgtggg ttaccgttcg cctatcatct tgcacgatat      1320
     tcatcgggac tgtttacatt cctcctaatc gagctaacga cacagatact cttacatctg      1380
     tgattgaaag tgtaagtgca atagtaaacc atgcaaaaac taatgatcta atatttttgt      1440
     ttggagattt taatttttcg gcagtatcgt ggtcactagc acaacaaaca tttggtcact      1500
     catcatcgtt cgcgcactat gtggcaaatt catcatcttc ggtcagatcc mggtttttgg      1560
     atgaaattaa cgctagcgat ctttatcaaa taagctgtat caaaaactcg cttaaccggc      1620
     agctcgactt agtattcgca aattttattg ccgcaactta ctgcatcgat ttgcacccct      1680
     gcccaacacc actagtctct cctgacctgt accatccagc catcgattta acggttcgaa      1740
     ttccaagcac aatgcctaat cctacactga cgcaagcaag tagacctagg atgaattttt      1800
     ataaaaccaa ttttactcgg cttgatgagc tcataactaa ttttaatagc cagttcagaa      1860
     ttagccagtt taattctgtc gatgaagctt tatcgatatt tatacgcttt cttttatcct      1920
     cgtttgattc gtgtgtacca attatcacac caaagagcgg ccctgcttgg tctgaccgcc      1980
     acctaaaaaa acttaaaaga gctaaggaag ctgcattaaa aaaatatacg aagtaccgat      2040
     cacctgttaa caaaagcata ttaaatgaaa caactcgctt gtaccgtagt tacaataaaa      2100
     tacgctacgg tggctacttg tctcggttgg agaagaattt tatcaaaagg cccaaagctc      2160
     tctggagttt tcgtaagaaa cacaatagta caaatgtgac acctaaatcg atttaccaca      2220
     atgaccgagc tggttcaact gcttcagata tgtgtgatat atttgcgtgt agattcgagg      2280
     aggcatacac aatctcaact actgacgaca atattatcac caacgcttta attaatactc      2340
     ctaatgatgt catcgacctt aatttaacta atatatcgca agaatctgtt ctaaatgtgc      2400
     tcaaagcagt caagcccaaa gctagtcccg gcccagatgg tattcctgcc atcattctca      2460
     gccgatgctg tgagtccatt gcgccgatct tcaccaaaat ttttaatttt tcgctgcaac      2520
     aaggagaatt cccctctatt tggaagagtt catggatagt ccccatattt aaaaaaggtg      2580
     acaaggaaga tgcagccaac tatagaggca taacatcact cagtgctgga gccaaagttt      2640
     ttgagaaagt gatccaaaca agtttactca cggcttcata tcactatatt agccctcaac      2700
     aacacggttt cgttccaaag cggtcgacga ttactaacct tgttgacttt acatcacaat      2760
     gtctccgtaa catggatagc aggattcaaa cagatgcagt ttatatggat ttaaaggctg      2820
     cttttgatag catcgatcac aacatccttt tagccaagat gaacaagttg ggacttgggc      2880
     gaaatttaat atgctggtta gaatcgtacc ttgtcaatcg atcgtatgct gtatctttct      2940
     cacggtgcca ttcaaggtct ttcattgcat catctggtgt gccacaaggt agcaacctgg      3000
     gtccactact gtttgtactg ttcatcaacg acctatcgta tgtagtacca gcagcgaatc      3060
     atttaatgta tgcagatgac attaaaatct acatgacgat aaaaaatgac acagaccact      3120
     ccgagctaca acaatacctt ctcgattttc accaatggtg caatcgaaac cgcctgagcc      3180
     tctgcattga aaaatgccga gtcatttcat tcacacgcgc acgagaaatt aagaatacca      3240
     gctacacagt taacggttta ccaatagaac gcactaatac tatgaaggat ctcggagtca      3300
     tacttgattc aaagctgtca tttgaccagc aaacagagga ggtgattacc cgaggtaatc      3360
     aattgcttgg catgttgttt cggataacaa gagatttcaa agacccagtc tgcatcaaag      3420
     cgttatactg tggtattatc cgcccggtac tcgaatacgc ctgtgtcgtc tggaagccct      3480
     caacccaaag actttctgag agaatggaat cgatacagcg tcgcttatcc cgatacgcaa      3540
     cacgcttgtt accttggcca cctggcagtc agttaccacc ttatgaatcg cgacttctgc      3600
     tcctcggact gcaaccgctc cacatccgac gccgtaccgc acaacaacta tttgtggctg      3660
     gtttactgca aaataacatc gactgtcctt ccctactcca gcagttaaac ttttacgcgc      3720
     ctgctgttca gcttcgctct cgtccgttac ttgccctgaa ccgtagtcga actggatatg      3780
     gatctagaga ccccctcaac tccatgatta gggtgtttaa cgaagttcgt catttgtttg      3840
     attttggaac ctcagtgcaa tcctttaaaa actgccttag aagcgaatta ttaagatgat      3900
     cttactactt attttaatct aatattagac ttaagaacat tcacacggat ccattgttat      3960
     ccattgaacg agtaataaac aaattaaaca aattaaacaa attaaac                    4007
//
ID   Ag-CR1-7    repbase;    DNA;    INV; 4332 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 3)
XX
DE   A CR1 clade non-LTR retrotransposon family from Anopheles
DE   gambiae.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Ag-CR1-7.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4332
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4332
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Direct Submission to Repbase Update (29-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           233..1228
FT                 /product="Ag-CR1-7_1p"
FT                 /translation="MADHCLTCARASSSEELTYTCDGFCKRWAHRSCLGVS
FT                 SAAVKDLIKEDSQILWLCHNCSENRRNGHSVMIAELTAALTDLKSQLSAEF
FT                 QTRMDAAAESLKRTMLSSLDQHADTRPASHTSTFTIQRKTSTSKAPVLSST
FT                 PATELSNPAKRRLMDRSPPSVVATSPLLNGTAPIATSAHATLLLPPETPKF
FT                 WLYLSRCRPTATILEVETFVKEQIGIEDVTVFKLVPLNRDVRTLTFSSFKV
FT                 GLSPDYKEKALLCSSWPIGTVFKEFTDRRNAPISTLSTNPLTTTTTAPTNT
FT                 HVPVTTNTDVSIHMETNNNITASTNNTAVSTSPPRSSQQQ"
FT   CDS           1135..4143
FT                 /product="Ag-CR1-7_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CIYSYGNKQQHYCLHQQHCSLDVTSSIITAAIATLLT
FT                 HSHSKSPLKFYYQNTRGLKTKLSDLRISLEVASYDVIILTETWLDDSIPSS
FT                 LFCDRKYTVYRCDRSSANSTCSRGGGVLIACSAKLLSLHIEVSQCSLELLW
FT                 IQIKLNGHSLFVGGVYLPPNLSSNTDTLDSFFNTITLIQSRMKDRDLFVLC
FT                 GDFNQPGLSWSQNEDYFAPLAVNPASSYFIDGLAEFNLRQLSGVVNIFRRQ
FT                 LDLVFVNELVTYSCSPVSCSIDPIVKLDHYHPPLEFVVNVPLPHNGNNVRD
FT                 NKSELNFRKMNLEKFREIITNSDWNFLEIRTDSPSTVDVAVEQFSNIVKAA
FT                 LPLCCPRSKPSSRLPWYDATLRSLKADRTRALKKLGSTPSEYNRRVFKYAA
FT                 SAFRIYNRASYRLYLGRLQCMLYRNPKLFWSYAKKRRNPSSLPTSMSLGSV
FT                 TTDNAADTCSLFAEHFANGLSRPESQPLTESEGIWPGLNSVAWAEGIVNVN
FT                 TVSEALKKLKPSFSPGPDGIPASVLKKSPFLFVPLLVKLFNLSLSSSSFPL
FT                 LWKRAWLVPIHKKGNPSVISNYRGISIQCAITKVFEHIIHTYVFKLTSSTI
FT                 IPQQHGFFPNRSTTTNLMSFTSFVSSQLESVKQVDTIYTDFKSAFDRIPHS
FT                 LLLNKISQLDVNNLFVSWLRSFLCDRSYSVKFNDMFSTPFSCSAGVPQGSV
FT                 LSPLLFIIFINDVRTTLPPECFLCYADDLKIFLPVSSPRDCISLQNILDRF
FT                 SSWCSSNSLTLCPDKCNVISFSRSQSPITYSYVLNSVQVNRVCVVKDLGVL
FT                 LDRGLTFSHHIDSVVNQARKTLGLLKKIACDFSDPMCLKTLFCSLVRSILE
FT                 YCSVVWSPTARTHVERIERVQRSFTRFAICKILGRLSSPIPPYEDRCRQLG
FT                 LELLENRRSHAQSSFIAALLLGNIDSPSLLSSIPFYAPNRVLRNRPPLVIP
FT                 SRRTAVGRNDPLLRAIRRFNCVYSMFDFNLPLSSFRSRIRTLHNPVLP"
XX
SQ   Sequence 4332 BP; 1077 A; 1098 C; 781 G; 1376 T; 0 other;
     tgaacattcc ttcgcttaca ctcacactga tagcacgtac tacatttcgc tccgctttat        60
     ttgcgttttg tgcacttatt ttcgcaaatc ccgatctggt tctatcattg cactgtgttc       120
     tgattatcag ttgtgcaagc ctcaataaac tgttcatata ctcaagtgct cgaagcctgt       180
     ataagtgata taaagtgtat actccttggc gcggtgagcc tgttgaatcg tcatggctga       240
     tcactgtttg acctgcgccc gtgcttcgtc atccgaggaa cttacttaca cttgcgacgg       300
     cttctgcaag cgatgggctc atcgttcgtg tcttggtgtg agtagtgccg cagtcaagga       360
     tctcatcaaa gaagattctc aaattctgtg gctttgccac aattgttcgg agaatcgccg       420
     caacggacac tcagtgatga ttgctgagct aacggcggca ctcaccgatc tcaaatctca       480
     gctgtcagct gagttccaaa cacgtatgga tgctgccgcg gaatcgctaa aacgcacgat       540
     gctatcctca ctcgatcaac acgcagatac tcgtcctgct tcacacactt ctacattcac       600
     cattcaacgc aagacatcga catccaaagc accagttctt tcgtcaacac cagccaccga       660
     acttagcaac ccggcaaaac gtcgtttaat ggaccgttct ccgccgtccg ttgtcgccac       720
     ctctccgctt ctaaatggca ccgcacccat cgccacttca gctcatgcca cattgctcct       780
     accaccagaa acgcctaaat tctggttgta cctgtcgcgc tgccgcccga cagccacaat       840
     cttagaagtg gagactttcg tcaaggagca aatcggcatc gaggatgtca ccgtttttaa       900
     gctggtgcca cttaaccgcg atgtccgcac tctgactttc tcttcgttta aagtcggttt       960
     gtcgccggat tataaggaga aagcattatt atgctcatcg tggccgatcg gaactgtctt      1020
     caaagagttc acggatcgta ggaatgctcc tatttctaca ttgtcgacaa atcccctgac      1080
     cactaccact acagcaccaa caaatacaca cgtacctgtc accacaaaca ctgatgtatc      1140
     tattcatatg gaaacaaaca acaacattac tgcctccacc aacaacactg cagtctcgac      1200
     gtcacctcct cgatcatcac agcagcaata gcaacactac ttacacactc gcactctaaa      1260
     tctccgttaa aattttacta tcaaaacact cgcggtctca aaaccaaact ttcggatctt      1320
     cgcatctctc tcgaagttgc gagctatgat gtcataatac taactgagac atggctggac      1380
     gattcgattc cttcatccct cttctgtgac cgaaagtata ccgtctatcg ttgtgatcgt      1440
     tcaagcgcta acagtacctg ctctcgcggc ggtggtgtac tcattgcctg ttccgctaag      1500
     ctcttgtcgc tgcacattga agtatcccaa tgctcgttag aacttttatg gattcaaatt      1560
     aaactgaacg gtcactcact ctttgttggt ggtgtgtatt tacctccaaa cctcagctcg      1620
     aatactgaca cgttagactc attcttcaat acaattacat taatacaatc tcgcatgaaa      1680
     gatagggatt tgtttgtctt atgcggtgat ttcaatcaac ctggactatc gtggtctcaa      1740
     aatgaggatt atttcgcacc gcttgccgtt aaccctgcct catcctactt tatagacgga      1800
     ttagctgaat tcaatctgcg tcaactttca ggggtcgtaa atatttttcg gaggcaacta      1860
     gatttagttt ttgttaatga gttagtgaca tattcatgtt caccagtttc ttgtagtatt      1920
     gaccctattg ttaaattaga tcattatcac ccacctctgg aattcgtagt aaatgttcct      1980
     ttaccgcata atggtaataa tgttagagat aacaaatctg agttgaattt tcggaaaatg      2040
     aacttagaaa aatttaggga aatcataacc aactctgatt ggaatttttt agaaattaga      2100
     accgattctc cctccactgt ggacgtagcg gtggagcaat ttagtaatat tgttaaggca      2160
     gctctccctt tatgttgtcc tcgttctaaa ccctcctctc gccttccttg gtatgatgct      2220
     acattgcggt cattaaaggc ggataggaca cgtgccctca aaaaactcgg ttcaactcct      2280
     tctgagtata atcgtagagt tttcaaatat gccgcttctg cttttcgtat ttataatcgg      2340
     gccagttata ggttgtatct tggaaggctt caatgcatgt tataccgtaa tcctaaactt      2400
     ttttggtctt atgccaagaa gcgtcgtaat ccctcttccc ttcctacttc catgtcgctc      2460
     ggttcggtca ctacggacaa tgctgctgac acctgttccc tattcgctga gcatttcgcc      2520
     aatggtctgt ctagaccgga gagtcaacct ttgacggagt ctgagggcat atggcctggt      2580
     ttaaactccg tcgcatgggc tgagggtatt gtcaatgtta atacagtctc tgaagctctt      2640
     aaaaaactta agccatcctt ctcccctgga ccggatggaa taccagcctc ggttttaaaa      2700
     aagtcacctt ttctattcgt ccctctattg gtaaaattgt ttaacctatc tttgtcctcg      2760
     tcttcattcc ctttattgtg gaagcgagca tggctagttc ccattcacaa aaaaggtaac      2820
     ccgtctgtca tttccaatta ccgtggcatc tcaatacaat gcgcaataac caaggtattt      2880
     gagcatatta tccataccta tgtgtttaaa ctcacctctt ctactattat ccctcagcaa      2940
     catggctttt ttcctaaccg ttctacaaca actaacctta tgtccttcac ctctttcgta      3000
     tcatcccagt tagagtcagt taaacaagtt gatactattt atactgactt caaatctgca      3060
     tttgatcgta ttcctcattc cttacttcta aataaaattt cacaacttga cgtcaataat      3120
     ctttttgtat cttggttacg ttcttttcta tgtgatcgtt cctacagtgt taaatttaat      3180
     gatatgtttt cgactccctt ttcatgtagt gcaggcgtac cgcaaggtag tgttctaagt      3240
     cctttgctgt tcataatttt tattaatgat gtccgtacca ccctccctcc tgagtgtttc      3300
     ctctgctacg cagacgacct caaaatcttt ctcccagttt cgtctcctag agattgcatt      3360
     tccctacaaa atattcttga tcgtttttcg tcttggtgtt ctagtaattc cctcacatta      3420
     tgtcctgata agtgtaacgt catttcgttt agtcgttcgc agtctccaat cacttactcg      3480
     tacgtcctaa attctgtaca agtcaatcgt gtttgtgtcg taaaagacct cggtgtcttg      3540
     cttgacagag gcctcacctt cagccaccac attgactcag ttgtcaatca ggcgcggaaa      3600
     acattgggtc tcctaaagaa aattgcgtgc gatttctccg acccaatgtg cctgaagact      3660
     ctgttctgct ctctggtcag atcgattttg gagtactgct cagtagtctg gtcccctaca      3720
     gctcgaaccc acgtggaacg tatcgagcgg gtgcagcgat cgttcaccag gtttgctata      3780
     tgtaaaatcc tgggtagatt gtcctccccc atacctcctt acgaggacag gtgtcggcag      3840
     cttggcctgg aactattgga aaaccgccgt tcccatgccc aatcctcctt tattgccgca      3900
     ttactccttg gtaatattga ttctccttcc cttctttctt ctatcccttt ctacgcccct      3960
     aaccgtgttc ttcgaaaccg ccctccccta gtgatccctt cccgccgaac tgcagtgggc      4020
     cgtaatgacc cccttcttcg tgcaattcgt cgatttaact gtgtatattc tatgtttgat      4080
     ttcaaccttc ccttatcctc tttccgatcc cgcatcagaa ccctccataa tcccgtgctg      4140
     ccttaatttt taatttttaa tttttaattt ttaaatttta gattctaatt ttctaaaaaa      4200
     aaattttttt ctcaaatttt tgataatttg tgttaatttt tgttaggtta ggaacatagg      4260
     taataagtat tatttaagca tttgtgtaac caaaaggtag acaaataaat atgaatatga      4320
     atatgaatat ga                                                          4332
//
ID   Ag-I-2      repbase;    DNA;    INV; 5557 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Ag-I-2.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5557
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-5557
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 4
CC   sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           308..1606
FT                 /product="Ag-I-2_1p"
FT                 /translation="MGGPGTAWGEYPTTPPNIRGRQAPIWMDGEDRLGELL
FT                 YLVLSPNEKSVLPKNPFIIEKSLTNHAGNIEPCKPIDKGSKYLVKTRSRAQ
FT                 FEKLQSLTKLIDGTSVNIIAHPYLNSVQCVIVCNSLEGLSDDDILSEMKEQ
FT                 KVVSVKRFLRKENGEIKPTNSFLLKIDAVQVPHEIRVGCLVVKTRTYYPRP
FT                 MICTQCLIIGHTKNRCNHETCCANCGEKEHGVCSSPIKCKNCSGSHVSLSR
FT                 SCPTYIDEQMIIKIKIDNSISYTEAKSVFENKRAHSVNERIQNAQQESVKD
FT                 QIIADLKKKVAQLEEKMDIFLKANDKLQKDNDKLKHMYLQTIKPKTNTNTT
FT                 SEPIDSSDNENTAPTRSHAHIVNLASNLNTQIDTDNGDNAYDKPIQKRKVD
FT                 SYSSTDEQHSDKTIPNTDENSSEFVKPKTTRRPKNRKTD"
FT   CDS           1738..5316
FT                 /product="Ag-I-2_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MNKNIDELKILINKHNPSFIALQETNHKPNTLHHSPL
FT                 NNYTWRFHNKPTLQHSVCLGVRKNISHTQLNISSDLPLIAISTKVPFDITI
FT                 VSAYFPNKMHPTNELSLYLTQTLNQINGPILLVGDLNASNTYWSNTRTNTR
FT                 GKILHNLFDLNNLQVIKNSSPTRISPSDGTGSCIDHCVVSSCSTEQFSLVV
FT                 EEDLHGSDHFPILIFDKHGDTRPKLRPRWKYNEADWSSYRFLIDRAIDGSA
FT                 LLSVDSFCSIILMAAELSIPRTSGKIPKKSVPWWNDSVEKAITARRKALRK
FT                 LRKASTISNNPNTSYLALKYQEANQIAKNEIEKAKKVSWEKFVTSIDPSLS
FT                 CKEVWSMVKNLTGNSQFSFPTLLNNNEPITSPSCIAEHFAQHFYEASATSK
FT                 YSATFIQRHKSKTISSISFVDTNNQSYNKPFSTEELIWALRKCRGNSAGID
FT                 DIGYPLLKQLPERALHCLLEIYNNIWRTGEIPNNWKTSLIVPIPKAEKDSL
FT                 SVDSYRPISLLCCMSKVLERLVNRRLIQELESRNLLSDKQHAYRIGRGTET
FT                 YFACLENVLTEAKNKNYHTDCAVVDLSKAFDRTWRPAILEQLKKWGFGGSL
FT                 PRFIKNFLTDRTCKVLIGSYTSNIKVLENGVPQGAILSPTLFLISMESLLQ
FT                 TIPTNIDTFIYADDIILITSDKSETKNRTKLQKALNKLHHWCCLTGHDLST
FT                 TKSKILHICNKSHKRTLKPIKIKYDIIPNARAVKILGVIIDSRLKFRQHLL
FT                 YVKKMIKSRLNILHMLGCGNKRSARRTLLTIFNSWFVPKLLYGIEFITMGD
FT                 ANFGCKLAPMYHSALKKITGAFITSPNTAVLCESGQLPLDHVVVLKIVNLA
FT                 GRLIEKGIEANSFVDRANKVLKQLTGHSMPNIARLTSCSTRPWYDKIPTID
FT                 WTLQKLSNHEQQIVQNYQMLIANKYKIYNKIYTDGSVYNSSAGCGITSPNA
FT                 RCSIKLPENTSIFSAEAIAIMIATEEATVNDRPNVIFTDSASVLKALEKGS
FT                 LRNPYIQTIESLSKDRSIEFCWIPGHKGIAGNEVADRLANEGRMIKDHVDG
FT                 TISRSDASLWWKGVINQSWQNIWNKSPITNLKKIKQTTAPWNDPLDHSDQR
FT                 VVTRLRIGHTRLTHTYKLKKESPLICPFCGCDTTVEHILINCFGYSAERQK
FT                 HRLGDHLDIVLSNNYKEIEKLLNFLKETNLYKQV"
XX
SQ   Sequence 5557 BP; 1996 A; 1151 C; 968 G; 1442 T; 0 other;
     cagttctgtg cgatactcgg agccgatcgg acgtgtttac gagagactct actgagggca        60
     atacacagtg ttatcagcta tcgttagttt gaagcaacga cctccgttgc tgtttttttt       120
     ttttgggtga gagaaagaga cactcacctg gaaactggaa gattgaagag tatagaattt       180
     ctctcgctta aacagcgctg cctctcgtgg cgcgcacaag caagtgctga aacaggtttt       240
     tttttctctt tctaattgat attgtaagta gaaacacttt atctaatttt tcaaacgatt       300
     taacaccatg ggaggaccag gcactgcctg gggggaatat cccacaactc caccgaatat       360
     tagaggtaga caagcaccta tatggatgga tggagaagat agactgggag aattattata       420
     ccttgttctg agtcccaacg agaagtctgt tttaccgaaa aatccattca taattgaaaa       480
     aagtctaacc aaccacgccg ggaatattga accctgcaag ccaatcgaca aaggttcgaa       540
     atatctggtg aagaccagaa gccgagctca atttgaaaag cttcaaagct taacaaaact       600
     catcgacggt accagtgtca atattatagc gcacccatac ttaaacagtg ttcagtgcgt       660
     tatcgtatgt aacagcttag aaggtctttc agacgatgat atcctatctg aaatgaagga       720
     acaaaaagta gtgtcagtga agcgtttttt gcgtaaggaa aatggtgaaa ttaaaccaac       780
     taactctttc cttttaaaaa tagacgctgt tcaagtccca catgaaatac gggtaggatg       840
     tttggttgta aaaacccgaa catattatcc tcgaccaatg atttgtacac aatgtctcat       900
     cataggccac actaaaaata gatgcaatca tgaaacttgt tgcgcaaatt gcggtgaaaa       960
     agaacacgga gtctgctctt ctcccatcaa atgcaaaaac tgttcgggta gccatgtttc      1020
     acttagtaga tcctgcccaa cgtacataga cgaacaaatg ataatcaaaa ttaaaatcga      1080
     caacagcatc tcttatacag aggccaaatc cgtctttgaa aacaaaagag cccattcggt      1140
     aaacgagaga atacaaaacg cacaacaaga atctgtgaaa gatcaaatta tagcggattt      1200
     gaaaaaaaaa gtagcccaac tcgaagaaaa aatggacatc tttttgaaag ctaatgacaa      1260
     actgcaaaaa gataatgaca agctcaaaca catgtatctg caaacaatca aaccaaaaac      1320
     taatactaac actacatccg aacccatcga cagctcagat aacgaaaata ctgcaccgac      1380
     gcgatcccac gcacacatcg taaaccttgc aagcaacctt aacacgcaga tagatactga      1440
     taacggagac aatgcctacg ataaaccgat acaaaaacgc aaagttgact catactcatc      1500
     cacagacgaa caacacagcg ataaaactat accgaatacg gacgaaaaca gctctgaatt      1560
     tgttaaaccg aaaacaacta gacgcccgaa aaatcgcaaa acggactaat ttgaaattta      1620
     tatctgatca gcctttgata ataatgattt gctatttctt catatgactt tcaattcgat      1680
     tcaaaaaata ataatataga tatttctcca tatattattt cttggaatat cagaggcatg      1740
     aacaaaaata ttgacgaact taaaatatta atcaacaaac ataatccctc ttttatcgct      1800
     cttcaagaaa caaaccataa gcctaatact ctacaccata gtccactgaa caattacacg      1860
     tggagatttc ataacaaacc aacacttcaa cacagcgtgt gtctaggtgt tagaaagaac      1920
     atttcgcaca cacagcttaa catctcatcc gaccttccac taatagctat ctctacaaaa      1980
     gtaccatttg atattaccat agtttctgca tacttcccta ataaaatgca ccccacaaac      2040
     gaactttctt tatacttaac acaaactctt aaccaaataa atggcccaat actacttgta      2100
     ggcgatttaa atgcttctaa cacgtattgg agtaatacac gaactaacac tagaggaaaa      2160
     attctccata acctttttga cctgaacaat ttacaagtaa taaaaaactc gtcacccact      2220
     cgcatatctc caagcgacgg cacaggatca tgcattgatc attgcgttgt gtcgtcttgt      2280
     tccactgaac aattcagctt ggtagtagag gaggatttgc acggtagtga tcacttcccc      2340
     atcctcattt ttgataagca tggggatacg cggccaaagt tgcgaccacg ttggaaatat      2400
     aatgaggctg attggtctag ttatcgtttc cttatcgaca gggctattga tgggtcagca      2460
     ctgctttcgg ttgatagttt ttgcagtatt attcttatgg cagcagaact aagcatccca      2520
     cgaacgtcag gcaaaattcc caaaaagtcg gtaccatggt ggaatgactc ggttgaaaaa      2580
     gcaataacag cacgaagaaa agctctacgg aaattgagga aagccagcac tatcagtaac      2640
     aacccgaata cttcatacct agctttgaag taccaagaag caaaccagat agccaaaaat      2700
     gaaatagaaa aagcaaaaaa agtaagttgg gaaaaattcg tcacaagcat tgacccatct      2760
     ctttcatgca aagaagtttg gagtatggtg aaaaatttga caggaaatag tcagttctca      2820
     tttccaacac tgttgaacaa caacgaacca atcacttctc catcctgcat tgcagaacat      2880
     tttgcacaac atttctatga ggcatctgca acttctaaat actcagctac cttcattcaa      2940
     cgccacaaat ctaaaactat atcatccata tcatttgttg atacaaataa tcaatcgtat      3000
     aacaaaccat tttccacaga agaactaatc tgggctttga gaaaatgtag aggaaactct      3060
     gcgggtatag acgatatcgg ctatccactc ctcaagcagc ttcctgagcg tgcattacac      3120
     tgccttctag aaatatataa caacatatgg aggacaggtg aaattccaaa taattggaaa      3180
     actagtctga tcgtcccaat tccaaaggca gaaaaagaca gcttaagtgt agacagttat      3240
     cgaccaatct ctttgctgtg ttgtatgagt aaagtcctgg aacgtttagt caatcgacga      3300
     ctaattcagg agctagagag cagaaatctg ttaagtgaca aacagcacgc ttacagaatc      3360
     ggccgtggta cagagactta ttttgcttgt ttagaaaacg ttctcactga ggctaaaaat      3420
     aaaaattatc acactgattg tgcagttgtt gacctatcaa aggccttcga tcgtacctgg      3480
     cgtccggcga tccttgagca attgaagaaa tggggatttg gaggaagttt accgcgcttt      3540
     ataaaaaatt tcctaacaga ccggacctgt aaagtactga ttggatcata tacctctaac      3600
     atcaaggttt tggagaacgg tgtccctcaa ggtgctatat tatcacctac gctttttcta      3660
     ataagcatgg agtctttatt acaaacgata cctactaata tagacacatt catttatgct      3720
     gatgacatta tactaattac ttcggacaaa tctgaaacaa aaaatagaac caaactacaa      3780
     aaagcactca ataaacttca tcattggtgc tgcttgacag gtcatgatct atcaacaaca      3840
     aaaagtaaaa ttctacatat atgcaataaa tcacacaaac gaacacttaa acctataaaa      3900
     attaaatacg atataattcc aaacgcaaga gcagtcaaaa ttttaggagt tatcattgac      3960
     tcaaggttaa aatttcgaca acaccttctc tacgttaaaa aaatgatcaa aagcagatta      4020
     aatattctgc atatgttagg ttgtggaaat aagagatcgg caagacgcac acttctcact      4080
     atttttaaca gttggtttgt tccaaaatta ttgtacggca ttgaattcat taccatgggc      4140
     gatgccaact ttggctgcaa gctagcccca atgtaccact ctgctctgaa aaaaattaca      4200
     ggtgctttta tcactagccc aaacaccgca gtactttgtg aaagtggaca attacctctc      4260
     gaccatgttg tagtccttaa aatagtaaac ctagctggca gactcattga aaaaggaatc      4320
     gaagcaaatt cttttgtaga tagagccaac aaggtgttaa aacaactaac aggtcacagc      4380
     atgcccaaca tagctagact cacaagctgt tcgactagac cttggtacga caaaatcccc      4440
     acaatcgact ggacattgca aaaactaagc aatcacgaac aacaaatagt acaaaactat      4500
     caaatgctca tcgccaacaa atataaaata tataacaaaa tttatactga tggctcggtc      4560
     tacaacagtt ctgcgggctg tggcataaca tcgccaaatg ctcgctgtag cattaagctt      4620
     ccggagaaca catcaatatt ctcagcagag gctattgcta ttatgatagc aactgaagaa      4680
     gcgaccgtaa atgacagacc taacgttatt ttcacagata gcgctagtgt tctgaaggca      4740
     ttagagaaag gatccttacg aaacccctac atacaaacta tcgaatcact atcaaaagac      4800
     aggtcaatcg aattctgttg gataccaggg cataaaggaa tcgcaggaaa cgaagtagct      4860
     gaccgtcttg cgaatgaagg taggatgatc aaagatcatg tagatggaac tatctctaga      4920
     agcgatgcat ccttgtggtg gaaaggggta ataaatcaga gctggcaaaa catttggaac      4980
     aaatcaccca ttaccaacct taaaaaaata aaacaaacca cggcaccttg gaacgatcca      5040
     ctagatcaca gtgatcaaag agtggtaaca aggttgagaa ttggacacac ccgacttaca      5100
     catacataca aactaaaaaa ggaatcaccg ttaatctgcc cattttgtgg gtgtgataca      5160
     acggtggaac acattttaat taattgtttt ggatattccg cagaaaggca gaaacacaga      5220
     cttggagatc atttggatat tgtactttcc aacaattaca aggaaattga aaaacttttg      5280
     aattttttaa aggaaaccaa tctctacaaa caagtatagc aaatatggat aaaaatattt      5340
     ataaaaacat aattgaaatg aaaaaagcac tagaattaac aaacattttc aactttcacc      5400
     agtaccataa taactcttgt aattttttct tctttttctt gaacttttaa tttattcttt      5460
     tttttgtatc tcaaatagta ttagcgattt ctgaatttta aattacgaga ggcgaatgct      5520
     aaaaagcctc gtaaaaaaat aaaacaacaa caacaac                               5557
//
ID   Ag-Jen-1    repbase;    DNA;    INV; 4320 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; Ag-Jen-1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4320
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4320
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 4
CC   sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           131..1300
FT                 /product="Ag-Jen-1_1p"
FT                 /translation="MRGRGRHKGKRLRPIPRNRNRSYDDSRVRSDRSENSY
FT                 ALLSECEDTPAKLQDAVPKTTTTKNSTSATVTNKVPPIVVKSSSVHFVHKC
FT                 VIEAGVVRYSTKQTNNGTNVQVTNTSDYRSVIKHLQNSNVAYHTYQLDEEK
FT                 STKIVLYGLHDLPTDEVMEILKEENLQPTSIKKLQIRQKRYDDQAVYLLHF
FT                 PAGTISMNLLRTIPALDHCVVKWSYFSKRAGPMQCKRCQLYGHGANNCNRV
FT                 ARCNKCADDHNSSVCPLTAGSSSSDGKVPEHKLKCANCGGNHTATFSGCPK
FT                 RPAANLPKEPKRTTSFNMEKNSFPALPQTKTIQGWKQLEQNPVKFVNFRQN
FT                 ETASGELFNSSEIIPIVGEVFQKLQKCKTKQDQITVIFEVVAKFCFP"
FT   CDS           1303..3984
FT                 /product="Ag-Jen-1_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDCPDNFNISYWNANGIANKKMDLIYYLSRYDIDAVL
FT                 IVETFLKPVHAFSIPNYIVYRVDRLSGPKGGVLIAIKCNFRHQLLKHNKLG
FT                 IIETLSVKVLTRLGEFTLIAAYHPGKNTNLVTFQQDIKKLSARNDNYFICG
FT                 DFNARHKSWNCVSTNAAGKLLFAEAQKGKFSIHFPDKPTYIPIDPTRNTST
FT                 LDLMLTKNLYTISKLRTITALTSDHLPVTFSIKHSSANFVSNKGIYNYKKA
FT                 DWNIFKNIINNSIDLTTIHPNDIINATQIDDMLHNLTSLITTAKQSAIPKA
FT                 IPGKYNIIIPDYIIALIKLRNKYRKKWQRHRRNITFRNYYHALKTEIEQQM
FT                 SLARNRAWSDTLKSINTQQNNTNNLFKFVKIVKNKQHTIQTLKLGNNIFLT
FT                 ATEKCNALKTHFENSHYLTYNTNSPMERKVTKNNRIFFARNQNHSLDPGYL
FT                 VKPKLLMNIIKNLKNKKSAGCDEINNTEIKMLPKKAVLYLKIIFDSCLKLG
FT                 YFPSQWKKAKIVAIPKPGKDHSNPGNYRPISLLSCIGKLFEKIIARNIRSH
FT                 TDINNIIPQSQFGFQPEKSTTHQIHRLKNYIIENRNRKRSTGLVLLDTEKA
FT                 FDSIWHDGLLYKLIQYNFPTYIIKIIQSFLSNRKSSVHIGHTKSNFFKPIA
FT                 GVPQGSILSPILFNIFISDIPSTNNCTNYLYADDLAIAATARSPSSIIKAL
FT                 NGTLKAYAKFCNRWKLKTNANKSEAIFFTRNTSLRKLPSNEVSFMQGNITW
FT                 KDQVKYLGVHLEKRMTFKTHIEKQLEKVDKLLKILYPFLNRKSKLNLQNKK
FT                 LVYTAYIRPILTYAAPAWISCAYSHRKKLQVRQNKILKMIMNLPPWHNTND
FT                 LHKRSNLVKMEEFIGNLNVNYANKCRQSSISIINQLVEQRI"
XX
SQ   Sequence 4320 BP; 1636 A; 850 C; 682 G; 1151 T; 1 other;
     ggcagtcgca atccagctcc gatcgagagc agacgtaaat ttgctgatct ctaatctgat        60
     aagcaatcga tagcgataga atcacaaaca aatactaaca agcagcaggt gtcccgttcc       120
     taccaacaag atgaggggga gaggaagaca caaaggtaaa aggttaagac caataccaag       180
     aaacagaaat cgttcatacg acgattcacg cgttagatcg gatcgttccg aaaacagcta       240
     cgcgctacta agcgagtgtg aagatacacc agcaaagctt caggacgctg tcccgaaaac       300
     cactactaca aaaaactcca ccagtgcgac ggtaacgaac aaagtgccac ctattgtcgt       360
     taaaagttcg tccgtacatt ttgtgcataa gtgtgtaata gaagcaggtg tagtgaggta       420
     cagcaccaaa cagacaaaca acgggaccaa tgttcaggtc actaacacaa gcgattaccg       480
     aagcgtgata aaacacctac aaaacagcaa tgttgcatat catacttatc aactagatga       540
     agaaaaatct acaaaaatcg ttttgtatgg cctacacgat ctcccaaccg atgaagtgat       600
     ggagatctta aaagaagaga atttgcaacc aaccagtata aaaaagttac agatcaggca       660
     aaaacgatac gatgatcaag cagtatacct actgcacttt ccggcgggta caatatccat       720
     gaatcttctc agaaccatcc ctgctctaga tcactgtgta gtgaaatgga gctatttttc       780
     gaaaagagcc ggaccgatgc agtgtaaacg ttgccaactg tacgggcacg gtgcgaataa       840
     ttgtaatcgc gtcgctagat gcaacaaatg tgctgacgat cataattcgt cagtgtgccc       900
     actcacagct gggtcatctt caagtgatgg caaagtgcca gagcacaaac tgaaatgcgc       960
     gaattgcggc ggtaaccata cagctacttt cagcggatgt cctaaacgtc ccgctgccaa      1020
     tctacctaaa gaaccgaaac gtacaacttc tttcaacatg gaaaaaaata gctttcctgc      1080
     tctaccacag acaaaaacaa ttcagggatg gaaacaactt gaacaaaacc cagtcaaatt      1140
     tgtaaatttc agacaaaatg aaaccgcgtc aggcgaactt tttaattctt cggaaataat      1200
     tccaattgta ggcgaagttt ttcagaagct acaaaagtgc aaaacaaagc aggatcaaat      1260
     aacagtgatc tttgaggtag ttgctaaatt ttgtttcccg tgatggattg cccagacaat      1320
     tttaatattt cctactggaa tgctaatggc attgccaaca aaaagatgga tttaatctac      1380
     tatttaagcc gatatgatat tgatgctgta ttgattgttg agacatttct gaaaccagtg      1440
     cacgcttttt ctattccgaa ttatatagta tatagagttg atagattatc gggaccaaaa      1500
     ggtggtgttc taatagcgat caaatgcaat tttagacacc aattgctaaa acataataaa      1560
     ctagggataa ttgaaacatt aagtgttaaa gtgctcacta gactaggaga atttacttta      1620
     atagcagcat atcacccagg taaaaatacc aacttagtta cctttcaaca agatatcaag      1680
     aaactttcag cgcgaaacga caactatttc atctgtggcg attttaatgc gcgacataaa      1740
     tcatggaatt gtgtctctac aaatgcagcc ggaaaactcc tttttgctga agcacaaaaa      1800
     ggtaaatttt ctatacattt cccagataaa ccaacataca ttcctatcga ccccacaaga      1860
     aatacttcaa cgttggactt aatgctaaca aaaaatctgt atacaatatc gaaattacga      1920
     actatcactg ctctcacttc ggatcatttg ccagttacat tcagtataaa acattcatca      1980
     gctaattttg tttccaacaa aggtatttat aattacaaaa aagcagactg gaatattttc      2040
     aaaaatatta taaataatag tatcgacttg accacaatac acccaaatga cataattaac      2100
     gctacacaaa tcgatgatat gctacataac ttaacctcac ttattacaac agctaaacaa      2160
     agtgccattc cgaaagcaat tcctggaaaa tataacatta tcattccaga ttacattatt      2220
     gctctaatta aactaagaaa taaatacagg aagaaatggc aaagacacag acgtaatatt      2280
     acctttcgga attattatca tgcacttaaa acagagatag agcagcaaat gtcactagcc      2340
     cgtaacagag cttggtctga tacattaaaa agtataaata cacaacaaaa taatacaaat      2400
     aacctattca aatttgtaaa aatagttaaa aacaagcaac atactattca aacgctaaag      2460
     ctaggaaaca acatcttcct aacagccact gaaaaatgta acgccctcaa aacacatttt      2520
     gaaaactctc attacttaac ttacaacaca aatagtccaa tggaaaggaa agttacaaaa      2580
     aacaatagaa ttttctttgc gagaaaccaa aatcactcct tggatccagg ttacttggtt      2640
     aaaccaaaat tactcatgaa cataatcaaa aatcttaaaa ataaaaaatc agcaggctgt      2700
     gacgaaatta acaacacaga gattaaaatg cttcctaaaa aggcagtact ctacctcaaa      2760
     ataatatttg atagttgtct taaactagga tactttcctt cacaatggaa aaaagcaaaa      2820
     atagtggcta ttccaaaacc cggaaaagat cattctaatc ctggaaacta cagaccaata      2880
     tcccttctga gttgcatagg taaacttttt gagaaaatta ttgcacgcaa tatacgttct      2940
     catacagaca ttaacaatat catcccacag tcacaatttg gttttcaacc cgaaaaatca      3000
     acaactcatc agatacatag actcaaaaat tatattatag aaaatcggaa tagaaaaaga      3060
     tctactggtt tagttttgtt agatactgaa aaagctttcg attccatttg gcatgacggc      3120
     ctgttatata aattaattca atataatttt cctacgtata ttataaaaat aattcagtcc      3180
     tttctcagca atcgaaaaag ttcagttcat attgggcaca ctaaatcaaa tttctttaaa      3240
     cccatagcgg gagtaccaca aggtagtata ttatcgccaa tactatttaa tatatttatt      3300
     tctgacattc cctctacaaa caactgtaca aattatctat atgcagacga cctagcaatc      3360
     gcggctacgg ccagaagtcc gagctcaata atcaaagcct taaatggcac attaaaagca      3420
     tacgccaagt tctgcaatag atggaagctt aaaacaaacg caaataaatc tgaggcaatc      3480
     ttcttcacga gaaacactag tttacgcaaa ttacctagta atgaagttag ctttatgcaa      3540
     ggaaacatta catggaaaga tcaagttaaa taccttggag tacatttaga aaaacgcatg      3600
     acatttaaaa cccacataga aaaacaatta gaaaaagtag acaaattact aaaaatttta      3660
     tatcctttcc taaataggaa atcaaaacta aatttgcaaa acaaaaaatt agtttacacg      3720
     gcttatatac gcccgattct gacgtacgca gcgccggcat ggattagttg tgcgtactct      3780
     catagaaaaa aacttcaagt tagacaaaac aaaatattaa aaatgatcat gaacttacca      3840
     ccttggcata acacaaacga tttacacaaa agaagtaatt tagtaaaaat ggaagaattt      3900
     ataggaaatt taaatgtaaa ttacgcaaac aaatgtcgcc agagctcaat tagcataatt      3960
     aatcaactag ttgaacaacg tatctaagca taaaatatga gtttataatt ttctgtacaa      4020
     agctctcctc ttctctatct agttaaggat taggtctagc aaatgtaggt taagatatag      4080
     gttagatata tatgtkttta ggttaagtct aaaattgcat gggttttttt ttgcactttt      4140
     cccatatact cagatttaaa atcagcaaac aacatatatt ctactcagct atgctataaa      4200
     aattcccgat tattgaggag agcacattgc gtacccaatg ttaaagaacg ttcgattcta      4260
     tatgtatttt tttttcttta tatccacaat aaacatctct actactacta ctactactca      4320
//
ID   Ag-Jen-11   repbase;    DNA;    INV; 4178 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; Ag-Jen-11.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4178
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4178
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 4
CC   sequences with >96% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..1277
FT                 /product="Ag-Jen-11_1p"
FT                 /translation="MGCSKKGSAPRDAVPSCSYITIPNVTTSNDYDILSED
FT                 EEAPSIIAASATAKQQKSKIPPITVTGTQVGDVHKKITSVGVVNYTTNCTY
FT                 KGIVVNTTTSKDFKLVVDVLKRHNNSFYTHQLPEEKTTKVVIFGLPEQDTE
FT                 YIKTVLAEVNIAPCVIKKLELKKKRYDDQCMYLLHFPRGSITLSELKQVRA
FT                 VDHHRVYFEYYSNKYGPMQCTNCQRYGHGSANCYLPPVCVKCADKHTSKTC
FT                 PLSQTTTCPDGKIAPAKLKCANCSEHHTANFSGCPARLRLKKVTPTPSRSR
FT                 EFTYNETSFPRLPNTPTRSTPSNHVNFSDLFHQQQTRSNNNLDFDLNEIGQ
FT                 IVKDVFSNLSKCSSKQDLIAVIVQISAKYCFPNLK"
FT   CDS           join(1228..2331,2420..3883)
FT                 /product="Ag-Jen-11_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SQLLFKYQQNIVFLTSNNVLKIIHWNANGISSKKDEF
FT                 FNYLLKKDIHIAAISETFLKNGTRFSHPNYHTYRLDRTQGEKGGVALVISK
FT                 AINHEVNSDYKLKVLEAIGITIKTQNSKVTIISIYNPGSNNDHSSFRKDIT
FT                 KLSKISNHFIICGDFNARHRFWNCSKANQMGKTLFEENQRGKFSIVHPEEH
FT                 THYPNDPNRRPSTIDLLLTNKPEKICNILTIQKFTSDHLPVYFEYNIGLIQ
FT                 NKHISGIPNYSEANWTLFKEILNNRLNTNNLNLQNINTSNQIDQMIKYFSK
FT                 LINYAHTKSVPFIIPDKFKITLPPNILQKIKHRNATRKQWQKDRNNTILKT
FT                 TYNTLKKRNNIRYKKLTKPELDRQPKANGKCYITNNEKCEILRDHFEKAYR
FT                 TTFPNQSPIEHHIQETNSRFFSYHQAQPSNNFDPINFIKPKHIKNIIYKLK
FT                 SKKSQGPDQINNHSLKQLPKKAIVYLAFILNACTKIHYFPLEWKIGKVIPI
FT                 PKLKKDHKDPKSYRPISLLSCLGKIFEKILHKKIIKHLNQHTIIPSYQYGF
FT                 QPGHSTTKQIDRLTTNIKTQRNIKKSTGFVMLDLEKAFDTVWHQGLLYKLI
FT                 SFNFPPNIIQLIQSFLSDRSCFVQITSSKSNDIHPPAGLPQGSVLSPVLFN
FT                 IFTSDLPKTKSVKKYCFADDFAMSSSDSNPKSIIKNLNNGIKKYVTFCKTW
FT                 KLKINEEKSEAIFFTRCTSAYKLPDRNLKISDWDIAWKDNVKYLGLFLDKR
FT                 LTFRKHIEEKVISGSRLIKXLYSFINKNSKLNLKNKLLLYKTVIRPTILYS
FT                 SKIWANCANVHINKLQVFQNKFLKRVLNLPPWHSTFDIHRITGFELVKNFV
FT                 RNT"
XX
SQ   Sequence 4178 BP; 1598 A; 865 C; 622 G; 1091 T; 2 other;
     gagttcttcg tcagtctccg acccgatcgg acgcatctaa tcgttatctg cgatcactga        60
     tatagaacac acacactagt aaaacagaca actacaacaa caaaatagcg aaggcgttaa       120
     aaaggctagc tcggcccata gccatgggct gcagcaagaa aggatcagca ccgagggacg       180
     ccgtgccttc gtgctcatac atcacgatac caaacgttac cacaagtaac gattacgaca       240
     ttcttagcga agatgaagaa gctccatcga taattgccgc atcggcaacg gcaaaacaac       300
     aaaaatcaaa aataccaccg atcacagtca ccggcacaca agtaggagat gtgcacaaaa       360
     aaatcacctc cgttggtgta gtgaactaca caactaactg cacatataaa ggtatagtgg       420
     ttaacactac cacatctaaa gattttaagc ttgtagtgga cgtgttgaag cgccacaaca       480
     attctttcta cacgcatcaa ctaccggaag aaaaaacaac gaaagtggta atctttgggt       540
     tacccgagca agatacagaa tacattaaaa ccgttcttgc tgaagtcaat atcgcaccat       600
     gtgtaatcaa aaaactcgaa ctcaagaaaa aacgctacga cgaccagtgt atgtatctcc       660
     tacacttccc tagagggtca ataacactga gcgagctgaa acaggttaga gcagtagatc       720
     atcaccgagt atactttgag tactactcta acaaatacgg tccaatgcag tgtacaaact       780
     gccagcgcta cggacatggt agcgcaaact gttatcttcc tccagtgtgc gtaaagtgtg       840
     ccgataaaca cacatccaaa acgtgtccac taagccaaac aacaacctgt ccagacggta       900
     aaatagctcc agccaaattg aagtgcgcaa attgcagtga acatcatacg gcaaatttct       960
     ccggctgccc agctaggcta cggcttaaaa aggtaacacc aacaccttct cgctccagag      1020
     aatttacgta caacgagaca tcgttccctc gtctccccaa cacaccaaca cgttccactc      1080
     cttcaaacca cgtgaatttc tctgacctgt tccaccaaca acaaacacgt tcaaacaata      1140
     atcttgactt tgacctcaac gagatagggc aaatcgttaa agatgtattt tcaaatctga      1200
     gcaaatgtag ctcaaaacaa gacctaatcg cagttattgt tcaaatatca gcaaaatatt      1260
     gttttcctaa cctcaaataa tgtacttaaa atcattcact ggaatgccaa cggtatttca      1320
     agcaaaaaag acgaattttt taactacctt ttgaaaaaag atatacacat cgcagccata      1380
     agtgagacat ttcttaagaa tggtacccgt ttttcgcacc ccaattatca tacttacaga      1440
     ctagacagaa ctcagggaga aaaaggtgga gtagctttag taatatctaa agctatcaac      1500
     cacgaagtaa atagtgacta caaattaaaa gtacttgaag caataggaat taccatcaag      1560
     acccaaaaca gtaaagtgac cattatttcc atctataatc caggttcaaa caatgatcac      1620
     agtagtttca ggaaggacat cacaaaacta agcaaaatat caaatcactt tattatctgt      1680
     ggtgatttta acgcacgtca ccgtttctgg aactgtagca aagcaaatca gatgggaaaa      1740
     acccttttcg aggaaaatca aagaggaaaa ttttctattg ttcatcctga agagcacacc      1800
     cattatccaa atgacccaaa tcgtcgcccc tcaaccatag atctactatt aactaacaaa      1860
     cccgaaaaaa tttgcaacat tcttaccata caaaaattta cctcagatca cttacctgtt      1920
     tattttgaat ataatattgg cctaatacaa aacaaacata tttctggaat accgaactac      1980
     tcagaagcaa actggacttt attcaaagaa attttaaata atcgcctcaa tacaaataat      2040
     ctaaatctcc aaaatattaa cacatcaaac caaatagatc aaatgataaa atatttctca      2100
     aaattaatta actacgccca cactaagtct gtcccattca taataccaga taaatttaaa      2160
     ataactctac cccctaatat acttcaaaaa attaaacatc gaaatgcaac aaggaagcaa      2220
     tggcagaaag atagaaataa cactatactt aaaacaactt ataacacatt aaaaaaaaga      2280
     aataatatta gatataaaaa acttacgaaa ccagagttgg acagacaacc ttgaaaaaat      2340
     taataacgac ccaagcaaat ctagactatg gaaatttgtt agaattataa aaggtaattc      2400
     ttcatttatt cctccctgaa aagctaatgg aaagtgttat attacaaata atgaaaaatg      2460
     tgaaattctg agagaccatt ttgaaaaagc ttacagaaca acgtttccaa atcagagccc      2520
     aattgaacat cacatccaag agacaaatag tagattcttt tcctaccatc aagcacaacc      2580
     cagcaacaac ttcgatccca taaactttat taaaccaaaa cacattaaaa acatcattta      2640
     taagttgaaa tcaaaaaaat ctcaagggcc agatcaaatc aataaccatt ccctaaaaca      2700
     gttgcctaaa aaagccatcg tatatttagc gtttatttta aacgcttgta ccaaaatcca      2760
     ttattttcct cttgaatgga aaattggcaa agtcatccca attccaaaac tcaaaaaaga      2820
     ccataaagac cctaaaagct atagaccaat aagtttactc agttgtttag gtaaaatttt      2880
     tgaaaaaatt ttacacaaaa aaattattaa gcatctcaat caacacacca tcataccttc      2940
     ttaccaatac ggttttcaac cagggcattc aactactaaa caaattgata gattaaccac      3000
     aaacatcaaa acacagcgaa atattaaaaa atccactggt tttgtgatgc tagatctaga      3060
     aaaagcgttt gatacggtat ggcaccaagg gcttttgtac aaactaattt ctttcaattt      3120
     tcctccgaac atcattcaac tgattcagtc atttttatcc gatagaagct gtttcgtgca      3180
     aataacctct tcgaaatcaa atgacattca cccacctgcc ggattacccc aaggcagcgt      3240
     gctgtcaccc gttcttttca acatatttac aagcgacttg cctaaaacaa aatctgtaaa      3300
     aaaatattgt tttgcagatg actttgccat gagtagttcg gattccaatc caaaatctat      3360
     tattaaaaac ctcaacaatg ggattaaaaa atatgtgaca ttttgtaaaa cttggaaatt      3420
     aaaaatcaac gaggaaaaat ctgaggcmat attttttaca cgttgcacta gcgcatataa      3480
     attaccagat cgtaatctaa aaataagtga ctgggatatt gcttggaaag acaatgtaaa      3540
     gtatttggga ttgtttttgg ataaaaggct caccttcagg aaacatatag aggaaaaagt      3600
     tataagtgga tcaagactta taaaaawttt gtatagcttc ataaacaaga attctaaatt      3660
     gaacttaaaa aacaaactgt tactttataa aaccgtaatt aggccaacaa ttctttactc      3720
     atctaaaata tgggcaaatt gtgcaaatgt tcatataaat aagttacaag tatttcagaa      3780
     taagttcttg aaaagagtgc taaaccttcc cccatggcat agcacatttg atatacatag      3840
     aattactggt tttgaactag taaaaaattt tgttcgtaac acataagttt tgtaatgcca      3900
     gtgaaggcac aattgtaaat agctagattg taatgtagat gtaaaaatag gagtaaggac      3960
     tagtacgtag gattatctta aggtaaaaca atcagagggt tttttttcta atttttcccg      4020
     atctacttca attcaggtaa agatgtacaa tccaaatacg caaagcgtta taacaatcag      4080
     gttattgagt agaggtcaat cgatcggaac caatgtataa ttcgtggaat attgttacaa      4140
     aacaaatcaa taaattactt acttacttac ttacttac                              4178
//
ID   Ag-Jock-1   repbase;    DNA;    INV; 4725 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; Ag-Jock-1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4725
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4725
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..1726
FT                 /product="Ag-Jock-1_1p"
FT                 /translation="MSKWRTVPYHAGPAVRKKRVKRTPDLLAEMRRRKREE
FT                 AQPESSTPASKKKGEIKITPATAGDVAVNAAMDGIDVPNTAEEENHRKEKI
FT                 PPIVVSGLNEEEYGSLCDATQSGAIKASFSFASGNTCRINAASRDDHDKVK
FT                 KLLENYTKEFYSHEFKADKPYQVVLKGLRFGSAEQVTVMLRDVKLQPSLVR
FT                 EVKIGEGRGLSSKLFVVSFPKGAISLEELQKITHINYTTVKWERFQPKHRD
FT                 VLQCLNCLNFGHGAKHCAMSPRCAKCAGNHRSKQCTKEMGDVHTCANCMGD
FT                 HSPYNRNCPSRKQYLQKRYSTQNAPRRLVPAPIPTRSSWAEPLPWVGQYRK
FT                 DSVCTCHGCPHGHQQQNQQLQQQQLQQKLQQQQQQQQQQNQQLQQQQLQQK
FT                 LQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQRQQQQQQQQ
FT                 QQQQQQQQQQSLQCKYQIASASCSYSIPRKTHRQPAQDKLDQLRSRLSDEE
FT                 DEEIKSQFGDIVRLWVEFKRLSKQCPRDQILMKMVEFITANF"
FT   CDS           1731..4373
FT                 /product="Ag-Jock-1_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIKCATWNACSVLPKRLELIDFLNHEKIDLLAVTETH
FT                 LKHNKTFFLPDHTVVRLDRPDQPKGGVLIAIRRTLAFKVLPLPNTHYIEAV
FT                 GIEMLSAEGNFHFYAAYCPRQVSDTSGTSRLLKRDLQLLTRASRRFIVAGD
FT                 LNARHQEWGNLRANRNGMILRELTQASACSVSFPFQPSFQNGNSYSTIDIF
FT                 ISNITDRLDVPSTITALSSDHLPVVMNIVCPGTHATRQQRNYREADWPRFE
FT                 RYITENISSAPPLLTIEDINTAITNVESCMKEAVDRFVPLIQVRHKVTELD
FT                 ADTKRLIASKNSLRRTYQRTRNRTYYSLYRQVAKIVDARMVEVRNRQFSDR
FT                 LKTLPKHSRPFWRLTKVLKDKRRPIPVLIDGGIPAFTPREKAVKLSVNFAQ
FT                 AHRLSESMTSTYESRVADSISSLVSEPIEATNIERISSGELLGTIKYLVGY
FT                 KAPGADGIFNIMLKHVGHSTVVLLTDVFNRCLELGYFPHLWKYAKVVPVLK
FT                 PGKDPSLGSSYRPISLLGALSKLFERTIYTRMMAHCESNNVISEVQFGFRK
FT                 HRSAAQQLQRVLDVVDSAKMRGKTTALALLDVEKAFDNVWHDGLIHKLRVQ
FT                 GFPLYIVRLVQSYLSGRSSAVYIGSEKSDPYENNAGVPQGSILGPLLYNCY
FT                 TADVPTLGANASLALYADDTAILYSAKPLRFIRAGLQRGLDSYVNFLKEWK
FT                 IVVNNTKTQALIFPYKVGMTASNIIAKVGSLKMENNIIPWASEARYLGVIL
FT                 DRRLTFKAHVGYIKTKTGHLFRMLYSLLKYNSGLSIENRLAIYGQIVLPSI
FT                 TYGSIAWGRCSRTNMQTIQVIQNRFLKTIMGLPNRYPTRALHSETGFVPIK
FT                 DKLSEIIECLKRKCRDSEVDIIRNLFSS"
XX
SQ   Sequence 4725 BP; 1448 A; 1068 C; 1070 G; 1139 T; 0 other;
     ttcgctgtcg ggacgttgac gtgatcggac gtgttttttg cgctctgtgc tcgtttgtga        60
     ccttgacgat taaagtgtgt ggtgtgttct gctcgcacca acacatgtgt aaatgagtaa       120
     gtggcgaact gtgccatatc atgccggccc cgcagttcga aagaaaagag tgaagcgtac       180
     gccggattta cttgctgaaa tgagaagaag aaaacgcgag gaggctcaac cggagtcatc       240
     gaccccggcc tcaaagaaaa aaggggaaat aaaaatcacg ccggcgacag ctggcgacgt       300
     agctgttaat gcagcgatgg atggtattga tgtaccaaat actgcggagg aagaaaacca       360
     ccgcaaagaa aaaatcccgc caattgttgt ctcgggatta aatgaggaag aatacggttc       420
     cctttgtgat gccactcagt caggtgccat taaagcctcc tttagtttcg cttctggaaa       480
     cacgtgtcgc ataaatgcgg catcaagaga tgaccatgat aaggtcaaaa agttacttga       540
     aaactacacg aaagaatttt attctcatga attcaaggct gataagcctt atcaggtagt       600
     cctgaaagga ctacgattcg gctcggctga gcaggttacc gtaatgttac gtgacgtgaa       660
     attacaacca tcgcttgtac gtgaagttaa aattggtgag ggccggggac tctcatcaaa       720
     actctttgtt gtctcctttc caaaaggagc aatcagccta gaggagttgc aaaaaataac       780
     ccatattaac tacaccaccg ttaaatggga acgattccaa ccgaaacaca gagatgtact       840
     acagtgtttg aactgcctaa actttggaca tggtgctaag cactgcgcaa tgtcaccgcg       900
     atgtgctaag tgtgcaggaa atcaccgctc aaagcagtgc acaaaagaga tgggagatgt       960
     acatacgtgt gcaaactgta tgggggacca tagcccctat aatcgaaact gcccctcgcg      1020
     taagcagtac ctgcagaagc gttactcaac acaaaatgct ccaagacgat tagtcccggc      1080
     gccaatacca actagatcat cgtgggcgga accattacct tgggttggac agtaccgtaa      1140
     agattctgtc tgcacttgcc acggttgtcc gcatggccat cagcaacaga accaacagct      1200
     tcagcagcag cagctgcaac agaaactaca gcagcagcag cagcagcagc agcaacagaa      1260
     ccaacagctt cagcagcagc agctgcaaca gaaactgcag cagcagcagc agcagcagca      1320
     gcagcagcag cagcagcagc agcagcagca gcagcagcaa cagcagcagc agcagcagca      1380
     gcagcagcag cagcagcagc agctgcagca gcagcagcag cggcagcagc agcagcagca      1440
     gcagcagcag cagcagcagc agcagcagca gcagcaaagc ctacagtgca aatatcagat      1500
     tgcatctgct agttgttcgt attcaattcc acgaaaaacc catcggcaac cagcccaaga      1560
     taagctggat cagctgcgat cccgtctttc cgatgaggaa gatgaagaaa taaaatcaca      1620
     gtttggtgac attgtccgct tatgggtgga attcaagcgc ttatcaaaac agtgcccgcg      1680
     tgatcagatt ctaatgaaaa tggtcgaatt tatcacagcc aacttttgag atgattaagt      1740
     gcgcaacgtg gaacgcttgc tccgtccttc caaaaaggct ggagttgatt gactttctga      1800
     atcatgaaaa aatcgacctg cttgctgtga ctgaaacgca cctaaagcat aacaaaacat      1860
     tttttctccc tgatcacact gtagttcgac tggaccgtcc tgatcagcca aaagggggag      1920
     ttctaattgc tatccgtcga actttagcgt tcaaagtact cccccttcct aacacccatt      1980
     acattgaagc tgtgggaatc gaaatgctca gtgctgaggg caactttcat ttttatgcgg      2040
     cttactgccc gagacaagta agcgacacta gtggtaccag caggctgttg aaacgcgatc      2100
     ttcaactgct cacccgggcc tcaagaagat tcattgtagc tggcgacctg aatgcccgtc      2160
     accaggagtg gggaaacctt cgcgccaata ggaatggaat gattctgaga gaactcacac      2220
     aagccagcgc atgctcagtg tcatttccat ttcagccttc gttccagaat ggcaattcct      2280
     actctacgat tgacatattc atctcgaata taacagatcg tcttgacgtc ccttccacca      2340
     tcacggcttt gtcatctgat cacttaccag tggttatgaa cattgtttgc ccggggacgc      2400
     atgccactag acagcagcga aattatcgag aagcagactg gccacgattt gagcggtata      2460
     taacggaaaa catcagttcg gcacctcctc ttctgaccat cgaagacatt aatacagcaa      2520
     tcactaatgt cgaaagctgt atgaaggaag cagtagatcg ttttgttccg ctgatccaag      2580
     tacgacataa ggtaactgaa ctcgacgcag atacaaaacg gcttattgcg tcaaaaaact      2640
     cgttgagacg gacataccaa aggacgagga acaggactta ctattcttta tacaggcagg      2700
     tagctaagat tgttgacgcc agaatggttg aagtaagaaa tagacagttt tcagatcgtt      2760
     taaaaacact tcctaaacac tctcggccct tctggcgtct aacgaaggtg ctcaaagata      2820
     agcgtcgacc gataccagtc ctaattgatg gtggaatccc tgcctttaca cctagggaaa      2880
     aagcagtgaa attgtcagtc aattttgctc aggcacatag attgagcgaa tccatgacta      2940
     gcacatatga gagtagggtt gctgacagca tcagttctct tgtttcagaa cctattgaag      3000
     cgacaaatat tgagcgtatc tccagcggag aactcctagg aaccattaag tatcttgttg      3060
     gctacaaagc accaggagcg gatggtatct ttaatattat gttgaaacac gtcggacaca      3120
     gcactgtcgt gttactgacc gacgtgttta acaggtgtct ggagctaggc tactttccac      3180
     acttgtggaa atatgcaaaa gtggttcctg ttttaaaacc tggtaaggac cctagcttag      3240
     gatcaagcta tcgtccgatt tcactccttg gtgccttaag taagttgttc gaaagaacaa      3300
     tttacactcg tatgatggct cactgtgaat cgaacaatgt catcagtgaa gttcagttcg      3360
     gttttagaaa acatcggtcg gcagcccagc agcttcagcg cgttttggac gttgtcgact      3420
     ctgccaaaat gcgtggaaaa accactgcct tggctcttct tgatgtggaa aaggcgtttg      3480
     ataacgtctg gcatgatggt cttatacata agctgagggt gcagggcttt cctctgtaca      3540
     ttgttaggct tgtacaaagc tacctaagtg gacggtcttc ggctgtctac attggatcag      3600
     agaaatctga cccatacgaa aacaatgctg gtgtgccgca ggggagtatt ctgggtcccc      3660
     tgttgtacaa ctgctacact gctgacgtcc ctacattggg ggcaaacgcg agcctggcac      3720
     tgtatgcaga cgacacagcc atcctgtact cggcaaaacc tctgagattc atacgagcag      3780
     gtctccaacg agggcttgac agttatgtga atttcctcaa agagtggaag attgtggtta      3840
     acaacaccaa aacccaagca ttaattttcc catataaggt tggaatgaca gcatccaaca      3900
     taatcgctaa agtgggcagt ttaaaaatgg aaaataacat cattccatgg gcttcagaag      3960
     ctcgctatct aggagtcatt ctggataggc gtctaacttt caaagctcac gtaggctata      4020
     taaaaaccaa aacaggccat ctttttcgaa tgctctactc cctcttaaaa tataattcag      4080
     gattatcgat agaaaacaga ttggccattt acggtcagat tgttttacca tcaataacgt      4140
     acggtagcat agcttgggga aggtgctctc gaacaaatat gcagactata caagtcatac      4200
     aaaacagatt cctgaaaacc attatgggac tgccaaatag atatcccacc agggcccttc      4260
     atagcgaaac aggttttgtt cctataaaag ataaattaag tgaaatcatt gagtgcctaa      4320
     agcgcaaatg tcgagactcg gaagttgaca taattaggaa tttatttagc agttaggaat      4380
     acgatgaaaa taccaatgaa ttagattaaa acaaaaatag attttaagtt agttaagtgc      4440
     cttgtaaata atcttctcct ttcccataaa attcggtaat attaagccga tagagaattg      4500
     atctcaagtc acaaggctca gaagccttgt aaattttttg cgaagtactg cttgttcttc      4560
     tgctccaagg aactataaag atacatctca tgtaacatgt acctagtgta agcgccaaaa      4620
     cggtaggaaa cctagcgagg attaaaaaac atcttgtctt tcaacaaatt tatatgaata      4680
     aatcataaca tctttttgtg cttaaaaaaa aaaaaaaaaa aaaaa                      4725
//
ID   Ag-Jock-12  repbase;    DNA;    INV; 4269 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Ag-Jock-12.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4269
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4269
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 12
CC   sequences with >96% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..1385
FT                 /product="Ag-Jock-12_1p"
FT                 /translation="MTKAKKKKREDTSPTVSDEGVNSAKHAPDKRAKIDGE
FT                 NTEEENEVEDNDGFVCVERRKGRTVSPPPSTAPSPAAGPHKLSQRLPPIVV
FT                 SNPRFQELQKMLAHIAKVEYQIVGVGTKVWTRNEEDYKAILTFLQTADCEF
FT                 YTHDLPRDRPFKVVVRGLPLSDEKDIRDALEAEKLQVDAVYRIKRRHEGNG
FT                 DSGSCLYLVHLKKGTITLAALKEIRALLSIRVHWEAFRGGRRGVTQCLRCM
FT                 GFGHGSRHCGMRQRCLNCAQNHNVADCTVVPPTVPKCANCDGNHKANDPEC
FT                 PQRARFQTIRQQATQRRPKTSAHGRNMVPPPPLSSYPPIGRNGSNAASAAL
FT                 AAPAAGVRAPVRDKTPAIVPRIPPGFQYSTALRMAGTDQTASQPNVSSEET
FT                 ALYDAATLMQIFSTMVERLNSCRSRREQVAVIGELIIRYGC"
FT   CDS           1378..4026
FT                 /product="Ag-Jock-12_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDAKLRIATWNACSVKAKKIPLLDFLQRRAIDVIMIS
FT                 ETFLRPEDNLSFANYHLIRLDRTTGHPGRGGGVAIIIRRGIIFRQLPHYRT
FT                 GIIEAIGIELQTSSGGIILVAAYCPVQCNRRNGLAAAFKRDLITITRSRSR
FT                 FIVGGDLNARHPAWNNNRRNMNGVALFEHAQEGHYAVHFPDTPTFPRSGST
FT                 IDFFLSNVDLDKPTTLDELISDHFPIVTEVVCSISKAPLVFRKNYHNVEWV
FT                 RFGRLVDNDVTDTNVRTVEDIDRAINEFDRAIKKAEAACVREYPVRGEYIE
FT                 LDPHTRALIVERNRLRRQYHNTGNVTCKSLAAAIARQISARLEVIRNENFG
FT                 HSMARMDTRAPAFWKVTKVLRKRPKPIPPLVNTVDNLMAVTPEAKSNALAK
FT                 QFASAHTLGANMPSPHEAEVAASLSLVDEAQSTVPPEGRVTTGRIRTALRR
FT                 LKNMKAPGFDGVLNILLKHLQERAICLISNIFHRCLELGYFPDAWKCARVV
FT                 PILKPGKDPTNPGSYRPISLLSSLGKLFERVILESLQETVETLDLIPEEQF
FT                 GFRPGHSTTHQLFRLKQLFEKNKREARSTVVAMLDVEKAFDNVWHGGLIHK
FT                 LVTFGIPMYLTKIISNYLQQRTFRVALGTTLSDVHLLPAGVPQGSLLGPLL
FT                 YILYTADIPALPCDGKIFLFADDTAIAVKGRSLTEVSRRAQRCLDTYIQYA
FT                 SSWKTRVNVAKSQVMIVPHRRKRSLIPTMHSRVEVNGVMVEWTNKVKYLGL
FT                 TLDSKMLSHGQVESILRQGQTLLMSLYPLISRRSRLSFVNKLAVFKQIIQP
FT                 AVLYGCQVWGTCARVHRQKIQVMLNKMLRMIANCDRYTRNSDLYDICEVAP
FT                 LDSYIQQQTTKLIEKCRDSTHRAVREIASI"
XX
SQ   Sequence 4269 BP; 1224 A; 1018 C; 1019 G; 1005 T; 3 other;
     gagttcgctt gtgaccatcg tcgcgtacag acgtgttctt gtatcgtgcg accaagtgaa        60
     tagcaaacga aaagcgtgcc atgacgaagg cgaagaagaa gaagagagaa gataccagcc       120
     caaccgtctc cgatgaaggc gttaattcgg cgaaacacgc gccggacaaa cgcgctaaaa       180
     ttgatggtga aaacactgaa gaagaaaatg aagtggaaga taacgatggt ttcgtctgtg       240
     tggagcgtag aaagggacgg actgtctccc caccaccttc aactgctcca tcaccagcag       300
     caggcccaca caagctgtct cagcggctac cacccatcgt agtgagcaac ccacgtttcc       360
     aagagttgca aaaaatgctt gcccacatcg caaaggttga gtaccaaatt gttggtgttg       420
     gcacaaaagt ttggacacga aatgaggaag actacaaggc cattctcacg ttcctgcaaa       480
     ctgccgattg tgagttttat actcatgatc tgccccgaga tcgtccgttc aaagtggtag       540
     tgcgagggct ccccctttcc gacgagaagg acattcgaga tgccctggaa gctgaaaagc       600
     tccaagtaga tgcagtctac cgcatcaaac ggcgtcatga gggaaacgga gatagtggaa       660
     gctgtctata cctcgtacat ctcaagaagg gtaccataac gctggctgcc ctaaaagaaa       720
     ttcgtgccct cctatctatc cgtgtccatt gggaggcatt ccgaggtgga cgacgaggtg       780
     tgacccaatg tttacggtgc atgggctttg gccacggctc gcggcactgc ggcatgcgtc       840
     aacgttgctt aaactgcgca caaaaccaca acgtcgcgga ttgcactgtg gtccccccga       900
     cagtaccgaa atgtgctaat tgtgatggaa atcacaaagc aaatgatccg gagtgccctc       960
     aaagggcgcg tttccaaacg atccggcaac aggcgacgca acgtcgtcct aaaacatcag      1020
     cgcacggaag gaacatggtg cccccaccac cactatcttc ctacccgccc atcggacgaa      1080
     atggttcgaa tgccgcctca gccgctctag cagcacccgc tgccggtgta cgtgctcctg      1140
     ttcgcgacaa gactccagca atcgttccca gaattcctcc gggttttcaa tattcgacag      1200
     cgcttagaat ggcaggaacg gaccaaactg cctctcagcc aaatgtatcg tccgaggaaa      1260
     cagcactata tgatgctgca actcttatgc agattttctc cacgatggtg gaacggctta      1320
     atagctgtcg ctcccgtcga gaacaagtcg ccgttatcgg agagctcata attcgctatg      1380
     gatgctaaac tccgaatagc aacatggaat gcctgttcgg tgaaagctaa gaaaatcccg      1440
     ttattggatt ttcttcaacg acgggctatc gacgttataa tgatatctga aacattcctc      1500
     cgccccgagg acaatctttc tttcgccaac tatcatctaa ttcgattgga tcgtacaact      1560
     ggacaccctg ggagaggagg aggagtggcc atcatcattc gccgtgggat catattccgg      1620
     caattgccgc attaccggac gggtatcatt gaggcgatcg gcatagaact acaaacatcg      1680
     agtggcggca ttatccttgt tgcggcgtac tgtccggtac agtgcaaccg cagaaatgga      1740
     cttgcagctg cattcaaaag agatctcatc accatcacga gatctagatc gagattcatt      1800
     gttggaggcg acttaaatgc acgtcacccg gcgtggaaca acaacagaag aaacatgaat      1860
     ggtgtggctc tcttcgagca tgcgcaagaa gggcactacg ctgttcattt ccctgatacg      1920
     ccaacgtttc cgaggagcgg gtctactatt gattttttcc tgtcaaacgt tgatcttgac      1980
     aaaccgacaa ctctagatga gttaatctca gaccattttc cgattgtgac agaggttgtt      2040
     tgctccatat ctaaagctcc tctcgtcttt cggaaaaatt accacaacgt tgaatgggtg      2100
     cgatttggta ggctagttga taacgacgtt acggacacaa acgtccgtac tgtggaagac      2160
     atagacaggg caattaatga atttgaccgt gccattaaaa aagcagaagc agcttgcgtt      2220
     agagaatatc ctgtacgagg tgagtacatt gagctagatc cccatacacg tgcgcttatc      2280
     gtggaacgta atcgacttag gcgccagtat cataacactg gaaatgtgac ctgtaaaagt      2340
     ttagctgcgg ctattgcaag gcaaatatcc gctcgtctgg aagtgattcg aaatgaaaat      2400
     ttcggacact ctatggcaag aatggacaca agggccccgg cattctggaa agtgaccaag      2460
     gtcttgagga aacggcctaa gcctatccct cccttagtca atactgttga caacctaatg      2520
     gcggttacac ctgaagccaa atcgaatgca cttgcaaagc aatttgccag tgcgcacacg      2580
     ctaggcgcaa atatgcctag cccacatgag gcagaagtag cagctagctt atccctagtc      2640
     gatgaggcgc agtccacggt acccccagaa ggtagagtaa caactgggcg gatcaggaca      2700
     gcgctgaggc ggctgaagaa catgaaggct ccggggttcg atggggtcct taacatccta      2760
     ctaaagcacc tccaagagag ggccatttgt ttgataagca atatctttca caggtgtctt      2820
     gagttgggct actttcctga tgcatggaag tgcgcaagag tagtgcccat tctcaaaccc      2880
     ggtaaagacc ccacgaatcc cggaagctat cgcccaatca gtctcctttc ctcgctagga      2940
     aagttgtttg aaagagtgat tcttgagtcc cttcaggaaa ctgtggagac acttgatctt      3000
     atccctgagg agcaatttgg cttccgtccc ggacactcta ctactcacca gctatttagg      3060
     ttaaaacaac ttttcgaaaa gaacaagaga gaggccaggt ccacggtagt cgcaatgtta      3120
     gatgtcgaaa aggcatttga caatgtctgg catggtggac ttatacacaa acttgtcacg      3180
     tttggcattc caatgtacct tacaaagata atttcaaact atctacaaca aaggacgttc      3240
     agggtagccc tgggtacgac gctctcagac gtacacttac ttccggccgg ggtgccacag      3300
     ggtagtctgc tgggtccact attgtacatc ctgtacactg cggatattcc ggcactacct      3360
     tgtgatggaa aaattttctt attcgcagat gacactgcca ttgcggtgaa gggtagatct      3420
     ctgacagagg tgagtcgtcg tgctcagcgc tgccttgata cttatataca atatgcttca      3480
     agctggaaaa cccgtgtcaa cgtggccaag agtcaggtca tgattgtccc acatcgacgc      3540
     aaacggtctt tgatcccaac tatgcacagc agggttgagg ttaacggcgt tatggtcgaa      3600
     tggactaaca aggtaaaata tttgggcctc acgttggata gtaagatgct ttcccacgga      3660
     caggttgaga gtatcttacg acagggtcaa actctcttaa tgagtttata cccactgata      3720
     tcgcgcaggt ccagactttc ctttgtgaac aaactagctg tctttaaaca aatcattcaa      3780
     ccagcggtac tctatggttg ccaggtttgg ggaacatgtg ccagggtaca tcgccaaaaa      3840
     atacaggtaa tgctgaacaa aatgctaaga atgatagcaa attgcgatcg atacactagg      3900
     aattcagatc tttatgacat atgcgaagta gctccactcg atagctacat acaacagcaa      3960
     acgacaaaac taattgaaaa atgcagagat tctacacaca gggcagtacg tgaaatcgcc      4020
     tctatttgaa tttttctttt aggtttaggg tagattaggt taagatagga taattaggtt      4080
     aaggtaaaac tctcagttct attaatagaa caagctwcta cagtgtatca aaatacagca      4140
     agaaagtgaa gccccaaaat aggacgwata agaaaaatam cctgtaaagc atacgtgctg      4200
     catcttgtaa aacttggaaa atcaactgta aaggaaatca aagtacaaat atacgtttaa      4260
     ctaactaac                                                              4269
//
ID   Ag-Jock-13  repbase;    DNA;    INV; 4443 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Ag-Jock-13.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4443
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4443
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           289..1521
FT                 /product="Ag-Jock-13_1p"
FT                 /translation="MEVENRSHDSVRVETTNTAVTPQTAASTSCPNTVIRS
FT                 ARIPPIVVNAPYHQLRAELAGIPGIVYQFAGAKVKLIISLVETRDRVLTLL
FT                 KANRKEFFTHELRSEKPFKAVIRGLPDLPEEDIITALREQSIEPLVVHKIS
FT                 KKHYEGHSRQACLYLVHFTKGTITLAALKCIRTVDSIRVSWEAHRSGKGRI
FT                 VQCHRCQAFGHGTRNCSMKKRCENCSEEHDSETCPTKAPEATKCANCNGSH
FT                 RSTDPDCPSRHNYNLSRQKTSTITHRQPKPSGQPPPALTNANFPPLKHLGL
FT                 PTPANAPNAYHNTAATTTAANTVPDVTTNPWLPRDRAVTESTTRATIMRTQ
FT                 PMNGSAMRAPSSHNFTAPADTLPGDEEGDFSIEEWVEILRIMTQRFRLCRN
FT                 RYEKFAVIAELAIRYGC"
FT   CDS           1514..4162
FT                 /product="Ag-Jock-13_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDAKLRIVTWNARSIAAKKIPLMEFLLRQKVDVALVS
FT                 ETHLRPDINFSLKGYHFLRLDRQGTTTRGGGVAIIVRSGINFNQISHLNTT
FT                 VIEALGIEVQLSIGLIKIIVAYCPMQCRRNDGKAAAFKNDLNIITRSHQRL
FT                 IVGGDLNARHQAWNNLRRNTNGELLFRHSETGQFTVDFPDSPTYISAGGTF
FT                 STLDLFLTNVKISKPETLDELTSDHFPVVTEVDCSVSAGSIRRRKDYQNVN
FT                 WQRFGRLVDNQIQSTEILSVPEVNIAIANLEIAVRSAEAACVKESMIRGEF
FT                 SDMDSHTLALIKERNRLRRIFQHTGDITAKRLASTIAKQISARVEIIRNEN
FT                 FGRSIQRMDTRAPAFWKVSRILKQRPKPVPPLTSLGQIQVTPSEKSNALAS
FT                 QFANAHSDGVNRASRNEAKVATTLIRLEDSVFTVPLQEKVTITDVRIAIGR
FT                 MKNMKAPGFDKIFNILIKHLQVKALCLITKVFNICFELGYFPSTWKCAKVV
FT                 PILKPGKDPTLPTSYRPISLLPSLGKLFERIILDRLQNWVSELNLIRPEQF
FT                 GFRQEHSTVHQLLRVKGCIEQNKTDSKSTAVALLDVEKAFDSVWHGGLLHK
FT                 LVDFGLPVYLVKIISSYLKHRTFRVALHSALSDPNPVPAGVPQGSLLAPLL
FT                 YILYTTDIPPLPCDGMLFLFADDTAIAVKGRNMIELKSRLQRCLDAFLRFA
FT                 ADWKIKINPSKTQAIVFPHRFKKTLTPPLSPGLLVNGTTVPWSPSVKYLGL
FT                 TIDYKMIFRGHVESILERGHLLLKCLYPLISRRSRLSQLNKLAVYKQIILP
FT                 VATYAAPVWSTCAETHLCRLQIMLNKLLRMITDTSRFTRNADLYTIAGVLP
FT                 FKEEIQNQSEKLYNRCSVSTFPLINSLVQA"
XX
SQ   Sequence 4443 BP; 1358 A; 1069 C; 903 G; 1113 T; 0 other;
     ccttcagagg tgagtacgtc gttatcagca gctgatgccc cagataaacg cctgaagcac        60
     tctcagctgg aagaatcatc tgaaaccgaa gagaacgaca tcggcgacga tgatttcatc       120
     gaggttcgct ctcgcagtag tggtcgatct agatcgaaca aaaaaacaac tctcgcaccg       180
     attgcagcac ccataccaag gggatcacag gaatctaaac ctgcttgtgc agacaagcat       240
     tcaaatgcct cgctctccaa agagagtatc tattcccttg agggagctat ggaagtagaa       300
     aatcgctcgc acgatagtgt tcgtgtcgaa acaaccaata cagcggtaac ccctcaaacc       360
     gctgcctcaa cctcatgccc caatacggtg atccgttctg cacgcatacc accgatcgtg       420
     gtcaacgcac catatcatca gctacgcgct gaacttgccg gtatacccgg tattgtctat       480
     caatttgctg gcgcaaaagt gaaactaata atcagccttg ttgaaactcg tgaccgagtt       540
     ttaacgttac ttaaggcaaa tcgaaaggag ttctttaccc atgaactacg ctcagagaaa       600
     cccttcaagg cagtaatccg tggtctcccg gatcttcccg aagaggatat tatcaccgct       660
     ttacgcgagc aatccattga acccttggtg gttcacaaaa tatccaaaaa acactacgag       720
     gggcatagca ggcaggcatg cctttacctt gttcatttca caaagggtac catcacactg       780
     gccgctctca agtgcatccg cacggttgac tccattcgtg tctcatggga ggcacatcgc       840
     agtggtaagg gccgtattgt tcaatgccat cgttgccaag ccttcggtca tggaacaaga       900
     aattgttcta tgaagaaacg atgtgaaaat tgctctgagg aacacgactc tgaaacgtgc       960
     cctaccaaag ctccagaggc tactaaatgt gcaaactgca acggtagcca ccgtagtact      1020
     gatcccgact gtccaagtcg acataactac aatctaagtc gtcaaaaaac ttcgaccatc      1080
     acccatagac aaccaaaacc ctctgggcaa cctccaccgg cattaactaa tgccaatttt      1140
     ccgcctctta agcatttggg tctgcctaca cctgccaatg cacccaacgc ctatcataat      1200
     acagctgcta ctacaacagc agcaaatact gtccctgacg ttactacaaa cccgtggcta      1260
     cccagagatc gggctgttac agaatccacc acacgtgcaa ccatcatgcg tacacaacca      1320
     atgaatggct ctgctatgcg tgcaccatca tcgcacaact ttactgctcc agctgatacg      1380
     ttaccaggag acgaagaagg cgacttcagt atagaggaat gggttgagat actacgaatt      1440
     atgacacaac gcttccgtct ttgccgaaat cgttatgaaa aattcgccgt tattgcggaa      1500
     ttagccattc gttatggatg ctaaactccg cattgttacg tggaatgcgc gatcaatcgc      1560
     tgctaagaaa atacccctga tggaattcct tcttcgacaa aaagtggacg ttgcacttgt      1620
     tagtgaaaca caccttagac cagatattaa tttctcctta aaaggatacc acttcctacg      1680
     actggaccgg caaggcacta ctaccagagg cggaggggtt gctatcatcg ttcgtagtgg      1740
     tataaatttc aaccaaatat cgcacctgaa caccacggtc attgaagctc tgggtataga      1800
     agtgcaacta tcaatcgggc taataaaaat catcgtagca tactgtccga tgcagtgcag      1860
     gcgcaacgat ggcaaagccg ccgcgtttaa aaatgatctc aacatcatca cccgttctca      1920
     ccaaaggctc atcgttggtg gggatctcaa tgcacgccat caagcatgga acaacctccg      1980
     acgtaataca aacggtgaat tactctttcg ccattcagag acaggacagt tcacagtcga      2040
     ttttccggat tctccaacct acatctcagc ggggggcact tttagcacgc tggatttatt      2100
     tttgactaat gtaaaaatca gtaaacctga aaccctggat gagcttactt ccgatcactt      2160
     tccggttgtg acagaggtag actgttccgt ctccgcgggt tccatccgtc gtcgtaaaga      2220
     ctaccaaaat gtaaactggc agcgcttcgg tcgcctggta gacaatcaaa ttcaatcgac      2280
     ggaaattctc tccgtgccag aagtaaacat agcgatcgca aatcttgaaa tagctgtcag      2340
     gtccgcggaa gcggcttgtg tcaaagaatc aatgatcagg ggtgagtttt cggacatgga      2400
     ttcccatact ttagcactga taaaagaaag aaatcgactc cggcgaattt ttcaacacac      2460
     aggtgatatc actgcaaagc gacttgcgtc gactatagct aaacaaatat ccgctcgggt      2520
     tgaaattata cgaaatgaaa attttggtcg ttccatccaa agaatggata ccagagctcc      2580
     agctttctgg aaagtgtcaa ggatactcaa acagaggcca aagcctgtcc cccctttgac      2640
     ctctcttggg caaatccaag ttactcctag cgaaaaaagt aatgctttag ccagccagtt      2700
     tgccaatgct cactcggatg gtgtaaacag ggcgagtcgc aacgaggcta aagtggctac      2760
     caccttaata cgattggaag attcagtttt tactgtacct ctacaagaga aagtgaccat      2820
     cactgacgta cggattgcta tcggtcgcat gaaaaatatg aaggctcccg ggtttgacaa      2880
     gatatttaac atccttatca aacatttaca ggtgaaggca ctgtgcctga tcacaaaggt      2940
     atttaacatt tgtttcgaac taggttactt ccctagcaca tggaagtgtg ccaaggttgt      3000
     gcctatactc aaacccggta aagaccccac gcttccgaca agttatcgtc caatcagctt      3060
     gctcccctcg ttgggtaagc tttttgagag gataattctt gaccgcctac agaactgggt      3120
     atctgagctt aatctcattc gaccggaaca atttggtttt cgacaagaac actcaacagt      3180
     tcatcaactt ttacgagtca agggttgcat cgaacaaaac aaaacagatt caaaatccac      3240
     agctgtagca ctgttagatg ttgaaaaagc attcgacagc gtttggcatg gtgggctttt      3300
     acacaagctg gttgattttg gtcttccagt ttatttagtt aaaattatta gcagctactt      3360
     aaaacacaga acattcagag tggccttgca ctctgcctta tctgatccaa atcctgtgcc      3420
     agcaggtgta ccacaaggga gccttcttgc tccgttactt tacatcttgt acactacgga      3480
     tatccctccc ctcccctgtg atggcatgct gtttctgttc gcagatgaca ctgccattgc      3540
     agtcaaaggt agaaacatga ttgaactaaa gagcaggttg caacgatgtc ttgatgcctt      3600
     cctgagattt gctgcagatt ggaagatcaa aatcaatcca tccaaaaccc aggcaattgt      3660
     atttccccat cgttttaaga aaacgctgac tccacctcta agcccggggc ttttagttaa      3720
     tgggacgact gtaccatggt cgccgtcggt aaagtatctg gggcttacga tagactacaa      3780
     gatgatcttc aggggacatg tcgaatccat cctagaaaga gggcatcttc ttttgaaatg      3840
     cctttatcca ctgatcagtc gtaggtctcg tttatcgcaa ttaaataaat tggcagttta      3900
     taaacagata atcctaccag ttgcaacata tgcagctcca gtatggagta catgtgcgga      3960
     aactcacctc tgtaggctac aaatcatgct taacaaattg ttacgtatga taaccgacac      4020
     aagccgcttc acaaggaatg cagatttata caccattgct ggtgttcttc ccttcaaaga      4080
     agaaatccaa aatcagtcgg aaaaactgta caatcgctgt tcggtctcga cttttccttt      4140
     aataaatagc ctcgtccagg catgataaat ctaatgtagg gtaagctaga atagattaca      4200
     tattaagata ttattgttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4260
     aaaaaaaaaa aaaaaaaaaa catctacgga ttcaaacgcc ctaccaatgt actgagtaga      4320
     acatattaat gcttagaagg caattgcaaa tcattttgta aaactgtttg ttggtcttaa      4380
     tggaaatcaa aaatttaagt ggtacacccc cgaaaaacat acaaataaat ttatatatat      4440
     ata                                                                    4443
//
ID   Ag-L1-5     repbase;    DNA;    INV; 4468 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; Ag-L1-5.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4468
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4468
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..1086
FT                 /product="Ag-L1-5_1p"
FT                 /translation="MSATGQSSIKLDFSHVPNKPTTNEVIDFITGKLGISM
FT                 IQVNRIHLRTSSVSCHVDIKEQSIALDIVEKNDGKHTIQCKGVEYPIPITM
FT                 DDGSTIVKIHDASAQVTNTHIKNHMQRYGDVICVTEGVWSDAFACAGIPNG
FT                 YRYVRMVIKKQIPSYIHINGETTLATHRGQQHTCRKCDHPVHHGMTCLSNR
FT                 KLNSQKTNLMDRLKSYADVTTSGIQQKQNTLNTTTTTNTIPVEQPPQPQPG
FT                 TSGLKFIPIKQTDAMTNDNSTVTETAVNLETNKGYRSRSPSVKRQAEKKLT
FT                 DFITVESKRWRTRYTKSAEDKITKGRRQSR"
FT   CDS           1159..4377
FT                 /product="Ag-L1-5_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANTTTHSNITEFKKSYRIGSINICNISNTTKTDALI
FT                 ATVKKLDLDIICMQEVNDSSLEIIQGYELITNIDERQRGTAIALKQDISFT
FT                 HVEKSLDGRIISLCFGRTKLINIYAPSGSQNRIQRERFFQQSLAYHLRHPV
FT                 ENIIIVGDFNCIIDKKDALGTSNYSPALRNAIDNLNLVDTWNLLKNDPEFT
FT                 YITSNSASRIDRIYISRNLKENLRSVDIHSVSFSDHRAYVIRLALPNNNQQ
FT                 IITRQKLWSYRKYITTQEIQNEFKENWIRWTRQKKHYGNWLTWWIKYAKPK
FT                 IKSFFLWKTKMHYKEYNQTHDRLQSRLNESYSKLVNNPDEKITINRLKAEM
FT                 LTLQRKLTQNFIKENNNYIAGEPMSTFHLFKRRKNRNFIKKLRLNNRTLEN
FT                 EKEILDAIQEQFKLLFSGNDNCLNSTPIIPRKIPEACVLNNDLTKEIETVE
FT                 IFHTIRTATKNRSPGLDGLPYEFYETFFDIIHKELNLIINEALDNDIPPEF
FT                 VEGIIVLIPKDNNTFEIENWRPITLLNADYKIFSRILKFRMKNILDTHNIL
FT                 TSSQKCGNGKNNIFQALLSIKDRIMNLKEKKIAGKLISFDMEKAFDRVDHT
FT                 YLYKTLTAIGFKENFITLIKKIYSVSTSRLYINGSLQEKLHIKRSVRQGDP
FT                 MAMHLFTLYIHPLLCKLENICNSQNDLVNCYADDISIITTDLNKIFNIKKA
FT                 FEEYETESGAKLNTNKSLAMDIGVVNNQNRINTEWIENREKIKILGILFTN
FT                 SFRLTMKLNWEATTHKFAQLVRQHRMRELNIQQRVILANTFLTSKLWYIGS
FT                 VMTISKYHLGRLTFYLGIFIWSNGGPRVKMQQLALNKAKGGLNLLIPELKL
FT                 KTLLINRHLIEKQHMPFTKSFLNQIENPPNIKDLPSFYPCLVPIRTELAYL
FT                 NDRYKNNPSAKEIYKKVTDSLPLPHIQSKTPSLHWNKIWRNINNNKMNSKQ
FT                 RSYYYLLVNEKIMTEEIKFKFGMKTNPNCEKCGNIEDLEHKFKDCKNIKNI
FT                 WILFTQIVKDELHIKPNFHELIKPDMNNIKKEKRAKIMSLFINYLIFIYKE
FT                 NFTNSIGKNQLKNIIC"
XX
SQ   Sequence 4468 BP; 1803 A; 808 C; 734 G; 1123 T; 0 other;
     tgtacagttc ggttctagag ctcgagcagt acagacgtag atgcagagtg ctcagcaaaa        60
     caaaaaaaaa actaaagaca agtgtgcgtt aaaaatacta gcgtgtggca gaccggcacc       120
     atgtcggcaa cgggacaatc cagcatcaag ttggactttt ctcatgtccc aaacaagcca       180
     acaactaatg aagtgattga cttcataacc gggaaacttg gaatttcgat gatacaggtg       240
     aacagaattc acctccggac gtcgtccgtt tcatgtcacg tagacatcaa ggagcaaagt       300
     attgccttgg acatcgtaga aaagaacgat ggcaaacaca ctattcagtg taaaggtgtg       360
     gaatatccca taccaattac tatggacgat gggtcaacga tcgtgaagat tcacgacgct       420
     tcagcgcaag ttacaaacac acacataaaa aaccacatgc agagatacgg agacgttatc       480
     tgcgttaccg aaggtgtgtg gagcgacgcc ttcgcatgtg ccggtattcc gaacggatat       540
     cgctacgtta ggatggtaat caagaaacaa ataccatctt atatccatat caacggtgaa       600
     acaactctcg ctacccatag aggacagcag cacacatgtc gcaaatgcga tcatcccgta       660
     caccacggaa tgacctgttt gagcaacaga aagctcaaca gccaaaaaac aaacctaatg       720
     gataggctaa aatcgtacgc agacgtaacg acgagtggga tccaacagaa acaaaataca       780
     ctaaatacaa caactacgac gaatacaatc ccagtggaac aaccaccaca acctcaaccg       840
     gggacatcgg gactgaaatt tataccaata aaacaaactg atgcaatgac gaacgataac       900
     agcaccgtca cagagacagc ggttaatttg gagaccaata aggggtacag gtcacgatcg       960
     ccttcggtga aaagacaagc tgaaaaaaaa ctgactgact ttataacggt agaatcgaaa      1020
     cgatggcgaa cgaggtatac gaaatcggct gaagacaaaa ttacaaaagg taggagacaa      1080
     tctcgataaa ttataattac taacacagct gaaaaaaaaa acgattcgac acatcgcaaa      1140
     gtaaaagata atttcgaaat ggccaacacc actacacatt caaacataac agaattcaaa      1200
     aaatcctatc gtataggaag tatcaatatc tgcaatatat ctaacacaac caaaacagac      1260
     gctcttatag ccacagtaaa aaagctagat ttagatataa tatgcatgca agaggtcaat      1320
     gattcgtcat tggaaataat tcaaggctat gaattaataa caaacataga tgaacgacaa      1380
     agagggactg caatagcttt gaagcaagac atttcattta cccatgtaga aaaaagttta      1440
     gacgggagaa ttatatccct atgctttggc agaacaaaac taattaatat ctacgcacca      1500
     tctggtagcc aaaacagaat acaaagagaa cgtttctttc aacagtcgtt agcatatcac      1560
     ttaagacatc ccgttgaaaa tataattatt gtaggagatt tcaactgcat tattgataaa      1620
     aaagatgcac ttggaacctc gaactatagc ccagcattac gtaatgcaat tgataatttg      1680
     aatttagtag atacttggaa tttgttaaaa aacgatccag aatttactta cattacttca      1740
     aactctgctt cacgtataga taggatctat atatcacgta atctaaaaga aaatctccgc      1800
     tcggttgaca ttcacagcgt ttcgtttagc gatcaccgtg cttatgtcat acgattagca      1860
     ctgccaaata ataatcaaca aataataaca aggcaaaagc tatggtcata taggaaatat      1920
     attacaacac aagaaattca aaacgaattc aaagaaaact ggataagatg gaccaggcaa      1980
     aaaaaacact atggaaactg gttaacatgg tggataaaat atgcaaaacc aaaaatcaaa      2040
     agttttttcc tatggaaaac taaaatgcat tacaaagaat ataatcaaac gcatgatagg      2100
     ttacaatcta gattaaatga atcatattcg aagcttgtaa ataatcctga tgaaaaaata      2160
     actataaatc gtttaaaagc tgaaatgctt acactacaaa ggaaactgac acaaaacttt      2220
     atcaaagaaa acaataacta cattgcagga gaaccaatgt ctacttttca tctatttaaa      2280
     cgaaggaaaa atcgtaattt cattaaaaaa ctccgtttaa ataatcgaac attagaaaac      2340
     gaaaaagaga tactcgacgc cattcaggaa caattcaagc tactcttttc aggcaacgat      2400
     aattgtttaa attcaactcc aattattccc agaaaaatac ctgaggcatg tgtgctcaat      2460
     aatgatctaa caaaagaaat tgaaactgta gaaatatttc ataccattcg aacagcaact      2520
     aaaaatcgta gtccaggatt agatggttta ccgtatgagt tctatgaaac attttttgat      2580
     attattcata aggaacttaa tcttataatc aatgaagctc ttgataatga tattccaccc      2640
     gaatttgttg aaggaataat tgttttaata ccaaaagata ataatacctt cgaaatcgaa      2700
     aattggaggc ctataacact gctcaacgca gattataaga tttttagtcg aattttgaaa      2760
     ttcagaatga aaaatatcct tgacacacac aatatcctaa catcttctca gaaatgtggc      2820
     aacggaaaaa acaatatctt tcaggcactt ctttcgatta aagatagaat tatgaacctc      2880
     aaggaaaaga aaatagcagg aaaactcatc tcttttgaca tggaaaaggc atttgatcga      2940
     gtcgaccata catatttgta taaaaccttg acggcaattg gatttaaaga aaactttata      3000
     acgctcatca aaaaaattta ctcagtatct acttcaagat tgtacataaa tggatccctc      3060
     caagaaaaac ttcatataaa aagatcggta aggcaaggag accccatggc aatgcattta      3120
     tttaccttgt atatacaccc gcttctatgc aaattagaaa acatatgcaa cagtcagaat      3180
     gatctagtca actgttatgc agatgacatt tctattatca caacggatct taataaaata      3240
     ttcaacataa aaaaagcatt cgaggaatac gaaactgagt caggagcaaa gcttaacaca      3300
     aacaaatccc tggcaatgga cataggagta gtcaataatc aaaatagaat caacacagaa      3360
     tggattgaaa acagagaaaa aatcaaaatc ttagggattc tattcacaaa ctcatttcgt      3420
     ttgacgatga aattgaattg ggaagcgaca acacataagt ttgctcaatt agtaagacag      3480
     cacagaatga gggagctcaa cattcagcaa cgggttatac tagccaatac tttcctaaca      3540
     tcgaaattgt ggtacattgg atcagttatg acaataagca aataccatct tgggaggctt      3600
     acattctatc tgggaatatt catatggtca aatggagggc caagagtaaa aatgcaacaa      3660
     cttgctctaa acaaagccaa gggaggtctt aacttgctaa taccagaact caaacttaaa      3720
     acattattga tcaaccgaca cctaattgaa aaacaacaca tgccatttac aaaaagcttc      3780
     ttgaatcaaa tagaaaatcc acctaacatt aaagatcttc catcattcta tccttgttta      3840
     gtgccaataa gaactgaact agcctattta aatgatagat ataaaaataa tccttcagca      3900
     aaagaaattt acaaaaaagt tacggattcg cttcctctac cacatattca atctaaaaca      3960
     ccatcactgc attggaacaa gatatggcgt aatattaata ataacaaaat gaattcaaaa      4020
     caacgaagct actattatct tttggtaaat gaaaaaatta tgacagaaga aattaaattt      4080
     aaattcggaa tgaaaacaaa cccgaactgt gagaaatgtg gaaatatcga agatctcgag      4140
     cataaattta aagattgtaa aaatattaaa aacatatgga tattgtttac acaaatagtg      4200
     aaggacgagt tgcatataaa accaaatttt catgaactta ttaaaccaga tatgaataat      4260
     ataaaaaaag aaaaaagagc taaaattatg tcattattta tcaattattt aatatttatt      4320
     tacaaagaga atttcaccaa tagcataggc aaaaatcaat tgaaaaacat aatatgttaa      4380
     acaagaatta ttatagattt aagctagcga ataagaattt tttgttataa gtgtgaataa      4440
     actgttcttt gttttataaa aaaaaaaa                                         4468
//
ID   Ag-Loner-1  repbase;    DNA;    INV; 6343 BP.
XX
AC   AAAB01008849;
XX
DT   22-JUL-2009 (Rel. 14.07, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Loner non-LTR retrotransposon, a fossilized genomic copy.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Loner;
KW   Ag-Loner-1.
XX
NM   Loner.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6343
RA   Biedler J. and Tu Z.;
RT   "Non-LTR retrotransposons in the African malaria mosquito,
RT   Anopheles gambiae: unprecedented diversity and evidence of recent
RT   activity.";
RL   Mol. Biol. Evol 20(11), 1811-1825 (2003).
XX
DR   Genbank; AAAB01008849; Positions 2639407 2633065.
XX
CC   ORF2 is corrupted by a frame shift.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..1777
FT                 /product="Ag-Loner-1_1p"
FT                 /note="ORF1."
FT                 /translation="MEAEPMDESDEGFITVKRKSSDPGQMAKKKVLHEPLA
FT                 STSRDDSAKANLKSRAKTYHASFNGAHNVFFMPRTKPLDVRSITASIYKKY
FT                 PGVLDVIRLHPKKLRVTAKDRVQANAIVADPDYTEDYRVYIPGGLVEVIGV
FT                 VDDFEYPLEDILQYGQGAFLYQSSPRVKVLEVKKLYASKMVDGKKVFRETS
FT                 SLRITFEGTVLPNTLYFEGLRVPIRRPFVTKVATCSKCSQIGHSEPYCTNS
FT                 VRCGKCKGPHSTAECKADTQKCFHCKQQWHEVSTCSVYRKTQAEHKKAVLF
FT                 NSKRSFADVLKKTSEVNPFDTLSLLEGNEPLPNLAPLTGVKRSITPRVSIK
FT                 GIRKNKTVPPKKAPRRHVDATQRQSQGPMPPRDVRTRPPSRNPPNPSNLAF
FT                 PSEPRSFSRQSLPSLTEILQSLLDSLSLPEPLSGLIPLAFPFLRGMVRQWL
FT                 SKWPCLSMMVRLDD"
XX
SQ   Sequence 6343 BP; 1717 A; 1499 C; 1456 G; 1671 T; 0 other;
     cattctgtcg ccaaccacga agcgaatcgg acgttatcga tacgcgctcc aggtggatga        60
     ttacggccaa agtcaagcca ctgaccccga ccatacacac cacgaagatt tgcgtacgct       120
     tggttgaacg tgaagcgatc tgtgcttgct gtgcgtaaaa gttgtacagt gttaagtgtg       180
     tgtagtgtgt ttaattgtct gtgcgttacc cgttagagag agttgagcgc atcgacgata       240
     caagtgcgta cggctcgcat ctcttgtgcg ctcgcatctc gtgcgctcgc atcttatcgt       300
     gtgcgctctc ctctcatttg tcccgtgctt ggtaagtgtt ccgctcttat cctgttatcc       360
     ttgttcccca tacagttaat tcgttggcta gggctctccc atggaggcgg agcccatgga       420
     tgaatccgat gaaggcttca ttacagtgaa gcgcaaaagt tctgacccag ggcagatggc       480
     caaaaaaaaa gtgttacatg aacctttggc ttcaacatcg cgagatgatt ctgctaaagc       540
     gaatttaaaa tcaagggcca aaacatatca tgcttctttt aacggggcac ataatgtttt       600
     ttttatgcct cgtaccaagc cgcttgacgt tagatcgatc acagcatcga tctacaaaaa       660
     atacccgggt gttttggacg tcatccgact gcatccaaag aagttgcgtg tcaccgcaaa       720
     ggaccgggtg caggccaatg caattgtggc cgatccggac tatacggagg attaccgggt       780
     ttatattccc ggtggattgg tggaagtcat cggtgtggta gatgactttg aatacccctt       840
     agaggatatc cttcaatacg gacaaggggc attcctttac caatcctcgc ctcgtgtcaa       900
     ggtcctcgaa gtgaaaaaac tgtacgcttc gaaaatggtt gacggaaaga aggtgttccg       960
     tgagacttcc tcactccgga tcactttcga gggtacagta ctgccgaaca cgctgtactt      1020
     cgagggtctg cgggtaccca tccgtcgacc ctttgttaca aaggtggcta cctgttctaa      1080
     atgcagccag attggacatt ccgagcctta ctgtaccaac tctgttaggt gcggtaagtg      1140
     caaaggaccg cattctacgg cagaatgcaa ggctgacacc caaaagtgct ttcattgcaa      1200
     acagcaatgg cacgaagtgt ctacttgctc agtgtaccgc aaaacgcagg ccgagcataa      1260
     aaaagccgtc ctttttaatt caaagaggtc attcgccgat gttttgaaga aaacctcaga      1320
     agtgaatccg ttcgatacac tctcacttct tgagggtaat gaaccgttgc ccaatctggc      1380
     ccctctaaca ggagtgaaaa gatcgattac accgagggtg tcaatcaaag ggatccggaa      1440
     aaacaaaact gttcccccta aaaaggcacc tcgacgtcac gttgatgcga cccaacgcca      1500
     atcccagggt cccatgcccc cacgtgatgt tcgtactcgt ccaccttccc gtaaccctcc      1560
     caatcctagc aatctggctt tccccagtga acccagatcc ttctccaggc aatccctccc      1620
     aagcctgaca gaaatcttac aatccctcct agactccctt tccctcccgg aacccctatc      1680
     cgggctaatc cctttggcat ttcctttcct aagaggaatg gtcaggcaat ggttatcaaa      1740
     atggccatgt ctcagtatga tggtccgctt ggatgattaa tgcctccaat gaccactata      1800
     ctacaatgga actgtagaag ttttttggga aaaattgact cttttaaagt attgataggg      1860
     caacacaatt gtaacgcatt tgccctaagc gaaacttggc tctcacccga caaaaatatt      1920
     accttcccgg gatataatat tattcgtcaa gatcgacatg atccagctag tgataggcgt      1980
     ggtgggggag tgttaattgg tattcgaagt agtcacagct tctacagaat acccctcccc      2040
     acacccgagg gaatcgaata cgtcgctata cagacaaaac taggggatct tgacgtttct      2100
     attgcttcaa tttatatccc accgggagcc aatctggacc caaagaagat caacaaggat      2160
     cttgaaaccc tagtaacggt actaccaaaa ccgtttttca tcctgggcga ctttaacgcc      2220
     catggatcag attggggttg tacgcatgac gataatcgtg caccaatcat tagggatatc      2280
     tgcgacacat acagtttgac gattttaaac tctggcgaag caactagggt gccctcacct      2340
     atggcacgac ccagcgcaat agacctatct ctttgttcat cgtctttagg gctggattct      2400
     atgtggaagg taatccaaga cccgcttggc agcgaccatc tgccaataaa gatctcgatt      2460
     atcaagagga gtcgcacagt cgatcaagtc cccgttaatt gtgacttaac gaggaacatc      2520
     gactggacga aatacggcaa ccaaatgacc gctttgctaa gccgcgtaga acccagtttc      2580
     tccgtaaatg aggagtacac aaatctcgtt atggcgataa acgagtgcgc cctcggtgcc      2640
     caaacgaggc cgccccccca ggcaaggatt tttaaaagac cacccactcc ttggtgggac      2700
     gcggattgta aagcggcatt ctcagcgaag cggaaggctt ttgccaggta tagagacacc      2760
     ggctccatgg atctatacat ccattataga ggcctggagc gtaggtgcaa aaacttgctt      2820
     aaagcaaaaa aaaaggtcat actggccgag gtatgtcaaa aacctcaagc cttccacttc      2880
     gctaacggag cttcagagca tggcgaaaag catgcgcaac agcaaagcaa caaacgagag      2940
     cgaaagggtt tctggggcat ggctagagcc atttgcacaa aaagtctgcc ctgatttcgc      3000
     tcaagcacca ccatttgaac agagtgctca tgggagtgat ccgcaaatgg attcaccgtt      3060
     cacaatggtt gagctatcgc ttgctctgta ctccagcaat aattcgtctc caggactgga      3120
     tcagattcgg aacaaattgc tccataatct gccagatctg gcgaggaaac ggctgttgag      3180
     attattcaac attatgttgg agcttaacac cgtcccgttg gagtggagag aggtgaaagt      3240
     agtcaccttg ttgaaacctg gcaaaccggc atcagactat aattcttatc gaccgatagc      3300
     aatgctatct tgcttgcgaa aactatttga gaaaatgatt ctttttagac tggacaattg      3360
     gcttgaatcc aaaggcctct tgtcaagtac ccaatttggc tttcgcaaag gcaagggtac      3420
     caacgattgc ttggcgctgc ttgtgtccga aatcgagatg gctcattctc gtaaagaaat      3480
     gatggcatct gtatttcttg acatcaaggg ggcttttgac tcagtatcag tcaatgttct      3540
     gtgtcaaaag ttatcatctg cgggcttaac cccaagactg aataacgtct tattcaacct      3600
     cctttcggaa aaggcaatga atttcgacaa tggccacatg aaaattcgga gagtcagtta      3660
     ctatggacta ccacaagggt cctgtttgag ccccttgttg tataattttt atgtgaacga      3720
     tattgatgca tgccttgcac ctggctgtaa cctaaggcaa ttggcggacg acggtgttgt      3780
     atcagtcgcc agcaacaaca tcgccgacct tcaaagtcct ttgcaaacca cacttaacaa      3840
     tttagaagtg tgggccacaa acctaggtat cgagttttct ccagagaaaa cggaaatgct      3900
     gatattctct ttcttttaca acactgagag taatagacgc ttgaatttgg ttgacccaaa      3960
     agtcgatatc tttttatatg gtaaaaagat atccattgcc agatcttttc gatacctagg      4020
     ggtttggttt gatagcaaaa atgtatggag gacacatatt gactatctgg tacagaaatg      4080
     tacaagaaga atcaattttc tcagaacgat taccggactc tggtggggtg cacatcccaa      4140
     agacgtcctt aacctatata agacaacgat actgtccgtc ttggagtatg gttgcatatg      4200
     cttccactgg gcagccaagt cgcatctaat ccgacttgag aggattcagt atcgttgtct      4260
     tagaatcgca ctaggtagca tgaagtcgac tcacaacatg tcactcgaag tgatgtccgg      4320
     agtgatgccg ctaaagcttc gttttgagct actatcgctt cgccttttcg tccgctctac      4380
     agtatcaaat cccttgataa tcgagaactt tgaaacactg caagagatag gttctaaatg      4440
     caaaatcatg aaggtctatc gtgattttgt ttctctacag gtgcacccta gtagttttca      4500
     aaacattagt agtgccagct taccagagtc ctacagttcc attttaagtg tagatacctc      4560
     gttgagggag gcaattaata ctatccctga taatcttcgc tggatgacaa ttcccaacat      4620
     ttttgtggaa agacatggcc aaccaaatgt aaaccatttt tacactgacg gatcctcatc      4680
     agagcagggc attggttttg gtgtatataa cacgtgtacc gaagcatatt ttaaattacg      4740
     ccaaccatgc tcagtttatg tagcggagct cgccgcaatc ttttatgcct tactgttgat      4800
     aagtgcatgc cctccggatc agtatgtaat tttttcagac agcctaagtg ctcttgaagc      4860
     attaaaatcc gtgaaggcta ttaagagccc agactatttt gtaaaagaaa ttctaaaagt      4920
     cctaagctcc ttgtttgaaa aatcgtttcg aatatccctg gtatggttgc ctgctcattg      4980
     cggcatctta ggaaacgaga aagcagacca tttggccaag aagggtgctt cggaagggtc      5040
     tttttacgat agacctatcc tccctcacga gttcttacga gccccacaag ctttctgcat      5100
     tgcacgctgg cagggcttgt gggacacgga tgaacttggg aggttcctgt actcgatctc      5160
     tcctagagtt tctttgaaac cttggttccg cgacatctct ggagagcgtg cattcattcg      5220
     aatgatgtct agacttaggt ctaatcattt cgcattgggc gcacatctcc agcgtatagg      5280
     acaggtcgac acaaaagcat gtggctgcgg ccttggattt cacgacatag accatcttct      5340
     atggtcttgc gtggaatacg aggctgcacg acccactttg ttggatgcag tcgaaaaact      5400
     gggaagatct cctggtgttc ccatccggga tatactagct gggtcagact ggagccttct      5460
     aaggatcatc tttgagttct gcagggctaa cggattaact gtgtaatatt cctataacag      5520
     agctattgtg gctggctgtg tattggttgg tcgttgtcgt tgtcatgcac tctcacgccg      5580
     atggcatgga tcgcggggtg ctatggaggg acttgctccc tcgtagcatc ttcgcggttt      5640
     ttggcagcgg ggtgcggtca tgtatcatcg tcgtgcggct tgctcttgca tggctggctg      5700
     aatgagttat gtatcccact cccactccat ctgttcgtct ttgtgctaca tgttgtaaat      5760
     cgctagtttg cttgtgatga atgactgtac gtatgaatga atgaatgaat gagcgtggtt      5820
     tgtatggatc ttgggtcagc tacagcttga gacagaaggt ctttgcatgg acgaagtcct      5880
     tgtaaagata aactcttcaa aaagagttcc gcgagagttc tcaaagcacc tcaactctgc      5940
     taccagaggc aagaatgcag aatgatgcaa actaaccatc ccaaagagcc ctggaatatg      6000
     gattggatta agacccctgc aatgcccacg gacaagagcg gactacttca acggacaaga      6060
     acgaaccaga agaattcgag caagccttgg gaaatttctt ttccacagga taatgacgaa      6120
     gcatatgatc tcgacctctg ccccctctta ttggaccact cgacaaggac aaggatcgga      6180
     ttttgacagc aacgtccgag cacacccggg atatggtgcc ctcctaaagc tgcgagaagg      6240
     aaatgtctcg caacagtcgt gcattaaaga ttaaactgaa tttatatgta ctctaatttt      6300
     aagcaatacg gcaaagccgt ccctactgaa taaaaaaaaa aaa                        6343
//
ID   Ag-Outcast-2 repbase;    DNA;    INV; 5347 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An Outcast clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Ag-Outcast-2.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5347
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-5347
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 3
CC   sequences with >95% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1445
FT                 /product="Ag-Outcast-2_1p"
FT                 /translation="MGVNDPGGGISLSNYYSGLGVDFQIGSAEEPRRKIKK
FT                 GTQLRKISEVNESEERFLVIEAEKEDKDLSRANPFLVKKTIDVIVGENNAN
FT                 ITRIRGGKLLVRVNSNKNAEKLKRLKKIGVGENETKIVVKEHPTLNTCKGV
FT                 IRCPDIEFLTENEIMEGLTEDKVTEVVILKRKVNDKVVNTRTAVITFNTTK
FT                 VPRKIDFGWYPLKVELYIPKPMRCGTCLKIGHTKKVCRREKVCAKCSENVH
FT                 IEECKDLKCVSCGGDHHTLDKQCPVFVDEMEIQKIKTVNKITYGEARKIRR
FT                 SQCPSIPRIFTNGQTYAQKTKITDNTENRSQTESNKKTYSKKIMIQNTTYT
FT                 ENNKNNENITENKTQENTQKENNTTEETVNTNNTEKPIHISETRISMNTPI
FT                 DVAQLDLEQILIQNENGELIPLQHEKKQ"
FT   CDS           1570..4845
FT                 /product="Ag-Outcast-2_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MNNLNILQANVQSFRKNKDEIEHIIKMEKINIACIQE
FT                 TWIKGKDNTKISGYNIITENREDGYGGSAIIIKKGMKFKQIKIGNRIKNIQ
FT                 IVAIEVIESSINIISIYMSPKTTIQEITEITQQINSIFNRRTVIMGDFNCH
FT                 HTFWGDKKIDNKGTKLIEEFDYTNFLILKNEKNTCISEDPNKRDTSIDLTI
FT                 ITQDLFTRIEKNIIEQHIGSSKHRIIKACIKEKTKKQQRTQLNKGKVIKNL
FT                 QNLKIDKISTINQITKKIETIIKQNITKVNYEPKSWWNKDIKTALKNRNTA
FT                 RKIYNNTKNIKDAIEYKKNEAVLKRKIKLSKKEFYKNSIEKINKNTTTKEL
FT                 WRLVKKLDGKEESIREENIIHNNEESARELLRKTYGKNEKIDIESINIPEF
FT                 INENKLIEEEEWEKILNKKKKSAPGVDKITYEMLKNIHPGTSKIIRDEINE
FT                 MWEKGKIKKELKRIKTIAIQKPNRDKTKVENYRFISLINTIMKVGNSAALK
FT                 KINKHCTINKILPDRSFGFRKNKSTQMCANYLLNWIQKKKKQKRKIGIIFA
FT                 DLENAYNNVKLKILIEELVKTNMNSQIITWISQFLKNRTIELECNKKIIKK
FT                 LVSDGLPQGDVMSPTLFNIYTRKIHSRINKIPKIRLIQYADDFAIVAADKN
FT                 ITLLNRTLQRGIIEFQRAISELKLEMNIKKTKMMIMGKTKQKVRLKINNIE
FT                 IENVTAYKYLGITIDKQLNFKKHIEDIKNKARDRLYVFKVLCGKNRGLGTD
FT                 KARNIYRATIRSILENASSITKNAKINTRKKISTIANTALRKISGCTKTTP
FT                 INSLHAINAEIPLEIRCKYIANKEMTKAYTVSPIIREQLLNAVRNNTNKKT
FT                 LTAQQQLFKENRSTIQNIAISKINDIEHNVSINTSIKNKIEEKKNRNNQVT
FT                 KQIVLENINEQMKKRNNIFTDGSKQQEKNGIGIYIQKGQENWYHSIKANND
FT                 ACIASIELTAIEIAMKMAEELKMERPTIYTDSLTSCDILKKAKDEEEIEET
FT                 IYNIIEIGNRLKAKIWWIPAHVGIHGNECADRLAKEGTISNITTENKIRLV
FT                 DAYERYKIEMIKKQKSGTRNNVKQRSKIPGISKKT"
XX
SQ   Sequence 5347 BP; 2680 A; 771 C; 899 G; 997 T; 0 other;
     gcacaaacca attgcatctt gaaggaacca cacgtgccat tttgagcaga cagtttacaa        60
     ggacagtgaa cccaaaagca caaaagatag aaacacgtgg agtgatattt tgtgaattgg       120
     acgaaataaa tcaaagaaat aagtgaaaaa ggacactaag catacgaagt accgaaacga       180
     tgggggtcaa cgaccccgga gggggaattt ccctctcaaa ctattatagt ggattaggag       240
     tagatttcca aataggatcc gcagaggaac ctagaaggaa aataaaaaaa gggacccaat       300
     tgaggaaaat aagtgaagtg aacgaatcgg aagaaagatt tttggtgata gaagcggaaa       360
     aagaagacaa agacttaagt cgtgcaaacc cattcttagt gaaaaagaca attgatgtga       420
     tagttggaga aaacaatgca aatattacga gaataagagg tggaaaacta ctagtgagag       480
     tgaactcaaa caaaaatgcg gaaaaactta aacgtctaaa aaaaataggg gtgggagaaa       540
     acgaaacaaa aattgtagtg aaagaacatc ccacactaaa tacgtgcaaa ggtgtaataa       600
     ggtgcccgga catcgaattc ctcaccgaaa acgaaatcat ggaaggcctc accgaggaca       660
     aagtgacgga agtagtaata ttaaaaagaa aagttaatga taaagtagta aacacacgca       720
     cggcagtaat tactttcaat acgaccaagg tgcctagaaa aatagatttc ggttggtatc       780
     cgttaaaagt agaactatac ataccgaagc caatgcgatg tggaacatgt ctaaaaatag       840
     gacacaccaa aaaagtgtgt agacgagaaa aagtatgcgc caaatgtagt gagaatgtac       900
     acattgagga gtgcaaggac ctgaaatgcg tatcttgtgg aggagatcac catacacttg       960
     acaaacaatg tccagtgttt gtggatgaga tggagataca aaaaataaaa acagtgaata      1020
     aaataacata cggagaggca agaaaaatac gcagatcaca atgcccgagt attccaagaa      1080
     tattcactaa cggacaaaca tacgctcaaa aaacaaaaat aacagataac acagaaaata      1140
     gaagccaaac agagagtaat aaaaaaacat attcaaaaaa aataatgatt caaaacacaa      1200
     catatacaga aaataacaaa aataatgaaa atataacaga aaacaaaaca caagaaaaca      1260
     cacaaaaaga aaataacaca acagaagaaa cagtaaacac taacaataca gaaaaaccca      1320
     ttcacatcag tgaaactaga atatcaatga acacgcccat agacgtggca caactagact      1380
     tagaacaaat tttaatacaa aatgaaaacg gtgaactaat cccactgcaa catgaaaaaa      1440
     aacaatagaa aaaagattaa acaaatgtaa aaagagcgaa aaaaaaacaa aatatagtat      1500
     aatatccctt ttctccataa aaaaaatata aaaaaaacaa tagtaaaaaa accaaaaata      1560
     atcaattaaa tgaacaactt aaatatctta caagcaaacg tacaaagctt taggaaaaac      1620
     aaagatgaaa tagaacacat aataaaaatg gagaaaatca acatagcatg catccaagaa      1680
     acatggataa aaggaaaaga taacacaaaa atatcaggat ataatattat tacagaaaac      1740
     agagaagatg gatatggcgg aagcgcaata atcataaaaa agggtatgaa atttaaacaa      1800
     ataaaaatag gaaataggat aaaaaacata caaatagtag caatagaggt aatagaaagt      1860
     agtataaata taatatcgat atacatgagc ccaaaaacaa ctatacaaga aataacagaa      1920
     ataacacaac aaatcaactc aatattcaac agaagaacag ttataatggg agattttaac      1980
     tgtcaccata cattttgggg agacaaaaaa atcgataata aaggaactaa attaatagaa      2040
     gaatttgatt atacaaactt cttaatttta aaaaatgaaa aaaacacatg catatcagaa      2100
     gatccaaaca agagagacac ttcaattgat ttgaccataa tcactcaaga tttatttact      2160
     aggatagaaa aaaatataat agaacaacat ataggaagca gcaaacacag gataataaaa      2220
     gcatgcataa aagaaaaaac gaagaaacaa caaagaacac aactaaataa gggaaaagta      2280
     attaaaaact tgcaaaacct taaaatagat aagatatcaa caattaacca aataacaaaa      2340
     aaaatagaaa caataattaa acaaaatata actaaggtta attatgagcc taagtcgtgg      2400
     tggaataaag atattaaaac ggcactaaaa aacagaaata cagcaagaaa aatatacaac      2460
     aatacaaaaa atataaaaga tgccatagag tacaaaaaaa atgaagcagt actaaaaaga      2520
     aaaataaaat tgagcaaaaa agaattctac aaaaactcaa tagaaaaaat aaataaaaac      2580
     accacgacta aggaactatg gaggctagtt aaaaagttag atggtaaaga agaaagtata      2640
     agagaagaaa atataatcca caacaacgaa gaatcggcga gagaacttct cagaaaaaca      2700
     tatggaaaaa atgaaaaaat agatattgaa tcaataaaca tacctgaatt cataaacgaa      2760
     aacaagctga tagaggaaga agagtgggaa aaaattctaa acaaaaagaa aaaatcagct      2820
     cccggagtag acaaaataac atacgaaatg ctaaaaaaca ttcacccagg aacatctaaa      2880
     attataaggg acgaaataaa cgagatgtgg gaaaaaggga aaataaaaaa agagctaaaa      2940
     agaataaaaa ccatagccat acaaaaacca aacagggaca aaacaaaggt agaaaattat      3000
     agattcatat cattaatcaa tacaatcatg aaggtaggca attcggcagc cctaaaaaaa      3060
     ataaataaac actgtacaat aaacaaaata ctaccagaca gatcttttgg gttcagaaaa      3120
     aataaatcaa cacaaatgtg cgctaactat ctactaaact ggatacaaaa aaagaaaaaa      3180
     caaaagagaa aaataggtat tatctttgca gatctcgaaa acgcatataa taacgtaaaa      3240
     ctaaaaatac tgatagaaga actcgtcaag acaaacatga atagccaaat aataacctgg      3300
     attagtcaat ttttgaaaaa taggaccata gaattagaat gtaataaaaa aataatcaaa      3360
     aaactagtca gtgatggact gccacagggt gacgtgatgt ccccaacatt atttaatatt      3420
     tatacaagaa aaatacatag taggataaac aaaataccaa agattagact aatacagtac      3480
     gcggatgatt ttgctatagt ggctgcagat aaaaatataa cactattaaa tagaacactc      3540
     caaagaggta taatagaatt ccaaagggca ataagcgaac taaaattaga aatgaacata      3600
     aaaaaaacaa aaatgatgat aatgggcaaa acaaaacaga aagtcagatt aaaaataaat      3660
     aacatagaaa tagaaaacgt aacggcatac aaatatctgg gaataacaat agacaaacaa      3720
     cttaacttca aaaaacatat tgaagatata aaaaataagg caagagacag attatatgtc      3780
     ttcaaagtgc tgtgtggaaa aaatcgagga ttaggaacag ataaagcaag gaatatatat      3840
     agagctacaa ttcgcagtat actcgagaac gcatcgtcga ttacaaaaaa tgcaaaaatc      3900
     aacaccagaa aaaaaataag tactatagcc aatacggcac taaggaaaat atcaggatgt      3960
     accaaaacaa ccccgattaa ttcgctgcat gccataaatg cagaaatccc actagagata      4020
     aggtgtaaat atatagcaaa caaagaaatg accaaagctt acacagttag ccccataata      4080
     agagaacaac tgttgaatgc agtacgaaac aacacaaaca agaaaacatt aacagcacaa      4140
     caacaattat ttaaagagaa cagaagtacc atacaaaaca tagccataag taaaataaac      4200
     gacatagaac ataacgtaag cataaatacc agcataaaaa acaagataga agagaagaaa      4260
     aataggaata accaagtaac aaaacaaata gtattagaga acataaatga acaaatgaaa      4320
     aaaagaaaca acatatttac agatgggagt aaacaacaag aaaaaaacgg aataggaata      4380
     tacatacaga aaggacaaga aaactggtat catagcatta aagcaaataa cgatgcttgc      4440
     atagcaagca tagaactgac agcaattgaa atagctatga aaatggcaga agaactaaag      4500
     atggagagac caacaatata cacggatagt ttaacaagct gtgatatcct gaaaaaagcc      4560
     aaagatgagg aagaaattga agaaacgata tacaatataa tagaaatagg aaatagatta      4620
     aaggcaaaaa tatggtggat acccgcacat gtaggaatac atggaaacga atgtgcggat      4680
     agattagcca aagaaggaac aatctcaaat ataacaacag aaaacaaaat aagattggta      4740
     gatgcgtacg aaagatacaa aatagaaatg ataaagaaac aaaaatctgg tacgaggaac      4800
     aatgtcaaac aaaggagcaa aattccaggc atttcaaaaa aaacttgaaa tgatccatgg      4860
     gaaaaagata ttgacataaa cccggaagaa gcgagaacaa taaacaaatt gttaacagga      4920
     cacgacctgt caccattttg gctggccaaa atgaaattag cagaatcagg attgtgccaa      4980
     atatgccaaa cacaaaatac agggcggcat atggttttta actgcaaaaa atacgaaaca      5040
     aatagaggag acataacatt tgatagatta aaagaaagat ggaaacaaaa atcaggatat      5100
     gaaattaaaa aaattaccaa attcatgaag gaaaatcaaa tagaaattta aaaaatacaa      5160
     aaaaaaatag catagaaaga caaaaatgaa gtcaagaaaa aaaaaacaga ataacaaaaa      5220
     aaaaaacaac caaatgacaa ctgtcaggtt aaaatataga gtgggtaaaa ccttgaatac      5280
     atttgaaacg tcaaatgtag gggaatacat cctcactcac cgaagaagaa gaagaagaag      5340
     aagaaga                                                                5347
//
ID   Ag-Outcast-5 repbase;    DNA;    INV; 4989 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An Outcast clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Ag-Outcast-5.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4989
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-4989
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 3
CC   sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..1037
FT                 /product="Ag-Outcast-5_1p"
FT                 /translation="MVTKDNTFKVDFNPMPQRPSPGYVIQFILEKIGVKKE
FT                 SLLKVQLMTTTAIAVVQIKESGEAIKIVDNHDGKHAVDYNGEKYFIPIKME
FT                 DNSTRVIIKNCTDQITNEEIKKAMMKFGEVKKVIDCVWEAPSPIAGIRDGN
FT                 REVTIVIDTPIPSFVSIKGEKAHVQYNGQQRTCKYCELNMHLGMTCLQYKK
FT                 TVTNNNEDEGTYANMVRKEGVKSSVQNRLQLERAVEGLNSGEKKQDNTLFK
FT                 KPVNTIKERRVYESVEEAPSTSKANAQKRTGIVDSHTTTETEDESCMETET
FT                 ELKKLKGRPKKTKTLTQETKQDNNTN"
FT   CDS           1067..4708
FT                 /product="Ag-Outcast-5_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MKIKMATINQKEISLLQTNITSLKRNKEELERMMNAN
FT                 KITIACITETWMKEEEVNKVNVSNYNLVTSNREDGYGGSAIYIRKNLAYKV
FT                 IKHDIKDKEVQITEIKLTREKINIVSVYMSPQLKINRFRENVSKLLHNRSG
FT                 NQKNIITGDLNCHHKIWGNPTNDSKGNFLLNELNDSNLCLLHNKEKTLIPT
FT                 DRSKRETAVDLTIISEDIIDKCQRTVTEHHMGATNHKTIITKINEIIQEHT
FT                 VTYTNKSKLFKEIEAIEVKETTTAYQVTKQIKKLIKSNKITSKKKPKIYWN
FT                 IETEKAWKNKNELRKIFNNDKSTENKINMNKGIAEFRTKKRLNKIKKFEDK
FT                 LEEVDFNRDPIKLYEFLQKMEGKFKSKTKAGNIIETDRKAAKIFLDKHFFK
FT                 NKKGNKKPYRNFKPNKDIIDIHKWNRLLKKKKNTAPGHDGVSYEILKKINE
FT                 KTRLVMVNEINEMWHKGIIKKHYKKMKIITFPKANQDKNDPLNYRGIALIP
FT                 AIIKMANSAVLEEMNRYWNINKVIPGTTFGFIKNRSINNCTNYITNRIGQN
FT                 KREGKATGIIFLDLTNAYDKVRTDILISKLEKYQTPKEIIRWIGAFLNNRT
FT                 IELNTEDTIINKLISDGLPQGDVLSPSLFNIYTKDIHDKINRLGIQIIQYA
FT                 DDFAIITQSHSHHILQTKMQEIMKQFSDITDELKLEINTEKTKFMIFDTKN
FT                 NNIKIRIKGKSIEKVNNYKYLGLWLDNKLTFKKQIDAMKTKTQKRLMTIKR
FT                 ICNYRNKLNPNKTIQIHRSFIRSNLEIGTASIRNAKKELLKQLDTIQNQSL
FT                 RKVTGCTKTTPIPSLMAIAAEIPLGIRAKYLASNEQAKEIAHSKIHRNLLC
FT                 DRNQNNNTRNNNNKHKTYYEKLYEENKNIINKMDNIVINDNTKRVSIISNA
FT                 PDNITKNQHTNKQILKRHYQQEIEFFRKTNTIIYTDGSRTDDGCGIGIYIK
FT                 PHNKNMYWSYKYKLKNNTPITSVELTAIDKALQIAVENNIINPILYTDSKA
FT                 ACSIIKREQYNNNIEESTYNIIKNSLKINAQIRWLPGHIDIEGNEKADALA
FT                 KKGVTADNIMENKLRKSDIKLMFQQRMIFETQEWYTTEIQHKGKKFAEYQK
FT                 EFKRDNWHKTININANEIKTMNRILTGHDFSKYWLKILKIEENDICDVCQV
FT                 QETGKHQIFHCTKYNNERQKYPNIQEDLFRKHWKNNDGKIIKEIIRFIQDT
FT                 KISL"
XX
SQ   Sequence 4989 BP; 2377 A; 763 C; 826 G; 1023 T; 0 other;
     cattccaagt tggtacgtca aacggacaac acagtttttc aaagcaaacg ttgaacgagt        60
     gatacaaaaa acgattttgc aaaatggtga cgaaggacaa taccttcaaa gtggatttca       120
     atccaatgcc acaaagaccg agtccgggct atgtgataca atttattttg gagaaaattg       180
     gagtaaaaaa ggagagtttg ctaaaggtgc aactgatgac gacaacggct attgcagtgg       240
     tgcaaataaa agaatcggga gaggccataa aaatagtgga taaccacgat ggcaaacacg       300
     cggtggacta caatggggag aaatatttca tacccataaa aatggaagat aactcgacaa       360
     gagtaataat aaaaaactgt acggatcaga taactaacga ggagattaaa aaagccatga       420
     tgaaatttgg agaagtaaag aaagtcattg actgtgtatg ggaagcgcca tccccgatag       480
     cgggaataag agatggtaac cgagaggtaa ccatcgtaat agatacacca ataccatcat       540
     tcgtatctat taaaggagaa aaggcgcatg tacaatacaa tggacagcag agaacatgta       600
     agtactgtga actcaacatg catttaggca tgacctgtct ccagtacaaa aaaacggtga       660
     cgaataacaa cgaggatgaa ggtacgtatg ccaatatggt acggaaggaa ggggtaaaga       720
     gttcggtaca gaatagacta cagttagaga gagcagtgga gggattgaac tcaggggaaa       780
     aaaaacaaga taacactttg ttcaaaaaac cggttaacac aataaaagag cgacgagtgt       840
     atgagagcgt agaagaagct cctagcacta gcaaagctaa tgctcagaag cgcacaggaa       900
     tagtggacag ccacactaca acagaaactg aggatgaaag ttgcatggaa acagaaaccg       960
     aattaaaaaa actaaaagga agacccaaaa aaacaaaaac tcttacacag gaaacaaaac      1020
     aagacaataa cacaaactaa taaactaaac aataaagaaa aattaaatga aaataaaaat      1080
     ggcgacgata aatcaaaagg aaattagcct attacagact aatataacaa gtttaaaacg      1140
     aaataaagaa gaattagaga ggatgatgaa cgcaaacaaa attactatcg cgtgcattac      1200
     cgaaacatgg atgaaagaag aggaagttaa taaagtaaac gtatcaaatt acaatttagt      1260
     taccagcaac agggaagatg gatatggagg atcagccata tacattagaa aaaatttagc      1320
     atacaaagtt atcaaacatg acataaaaga taaagaagtt caaattacag aaataaaatt      1380
     aaccagggaa aaaataaata tagtaagtgt atacatgtca cctcaattaa aaattaatag      1440
     attcagagaa aatgttagca aattactaca caacagatca ggaaatcaaa aaaatataat      1500
     aacaggagat ttaaactgtc atcacaaaat atgggggaac ccaacaaatg acagtaaagg      1560
     gaacttttta ttaaatgaat taaatgactc aaatttatgc ttattacaca acaaggaaaa      1620
     aacactaata cccaccgata gaagcaaaag agaaacagct gttgacctta ctatcatatc      1680
     agaagatata atagataagt gccaaagaac agttacagaa catcatatgg gtgcaacaaa      1740
     ccacaaaact ataataacaa aaataaatga aataatacag gaacacacag taacatacac      1800
     aaataaatca aaattgttca aagaaataga agcaatcgag gtaaaagaaa ccacgacagc      1860
     ataccaggta acaaaacaaa ttaaaaaatt aataaaatct aacaaaatca catcgaaaaa      1920
     aaaaccaaaa atatactgga atatagaaac agaaaaagca tggaaaaaca aaaatgaact      1980
     tagaaaaatt ttcaacaatg acaaaagcac ggaaaataaa atcaacatga ataaaggaat      2040
     agctgaattt agaacgaaaa aaagacttaa taaaataaaa aaatttgagg acaagctaga      2100
     ggaagtagat ttcaacagag atccaataaa actgtatgaa ttcttacaaa aaatggaagg      2160
     gaaattcaaa agtaaaacaa aagcaggaaa cataatagaa actgacagga aagcagcaaa      2220
     aattttctta gacaaacatt tttttaaaaa taaaaaagga aacaagaagc cttatagaaa      2280
     ctttaaacct aacaaagata tcatagatat acataaatgg aatcgcttat taaaaaagaa      2340
     aaaaaacaca gcaccaggtc acgatggagt atcatatgaa atactaaaga aaataaatga      2400
     aaaaacaaga cttgtaatgg ttaatgaaat aaatgaaatg tggcacaaag gaattataaa      2460
     aaaacattac aaaaaaatga aaataataac ttttccaaaa gcaaaccaag ataaaaacga      2520
     tccactgaat tatagaggta tagctcttat accagcgatt atcaaaatgg ccaatagtgc      2580
     agtgttggaa gaaatgaaca ggtattggaa tattaataaa gtaattccag gaacaacatt      2640
     cggatttatc aaaaacaggt cgataaacaa ttgcacaaat tacataacga atcgaatagg      2700
     tcaaaataaa agagaaggaa aagcaacagg gataattttc ttagacctaa cgaatgcata      2760
     tgataaagta cggacagata tacttatctc taaattagaa aaatatcaaa caccaaaaga      2820
     aattattaga tggataggag cttttttgaa caacagaact atagaattaa acacagaaga      2880
     tacaataatc aataaactaa tatcagacgg acttcctcaa ggagatgtgc tatcgccaag      2940
     cctatttaac atatatacta aagacataca tgacaaaata aataggttgg gaatacaaat      3000
     aattcaatat gcggatgatt ttgcaattat tacacaaagt catagtcatc acatactaca      3060
     aacaaaaatg caggagatca tgaaacagtt ttcagacata acagatgaat taaaactaga      3120
     aattaacaca gaaaaaacta aattcatgat ttttgatacg aaaaataata atataaaaat      3180
     aaggataaaa ggaaaatcaa tagagaaagt taataactac aaatacttag gattatggtt      3240
     agataataaa ctaacattca aaaaacaaat agatgctatg aaaacaaaaa cacaaaaaag      3300
     actaatgaca ataaaaagaa tttgtaatta tcgcaataaa ttaaatccta acaaaacaat      3360
     acaaattcac agaagtttta ttagaagcaa cttagaaata ggaacagcat caataagaaa      3420
     tgcaaaaaaa gaactactga aacagttaga tacaatacaa aatcaatctc taagaaaagt      3480
     tacaggatgt accaaaacaa ctcctatacc ctcactaatg gccatagcgg cagaaattcc      3540
     tttaggcata agagcaaaat acctcgcgag caatgagcaa gcaaaagaga ttgcacattc      3600
     aaaaattcac agaaatctac tatgtgacag aaaccaaaat aacaacacca gaaacaacaa      3660
     caacaagcac aaaacatatt acgaaaaatt gtatgaagaa aacaaaaata tcataaacaa      3720
     aatggataat atagtaataa atgataacac taaaagagta tcgataatat ccaatgcccc      3780
     ggataatata acgaaaaatc aacatacaaa caaacaaatc ctcaaaagac attaccaaca      3840
     agaaatagag ttttttagaa aaacaaacac aattatttac acggatggaa gcagaacaga      3900
     tgacggttgt ggtataggta tatacatcaa gccacacaac aaaaatatgt actggagtta      3960
     caaatataaa ttaaaaaaca acacacccat tacctcagta gaactgactg caatagataa      4020
     ggcactacaa atagcagtgg aaaacaacat aataaatcct atactatata cggacagtaa      4080
     agcggcttgc agcatcatca aaagggaaca atataacaac aatatagagg aaagtacata      4140
     caatattatt aaaaacagtt taaaaataaa tgcacaaatc agatggttac cgggacatat      4200
     cgatatcgaa ggtaatgaaa aggcggatgc cttagcaaaa aaaggagtga cggcagacaa      4260
     cattatggaa aacaaattaa gaaaaagtga catcaaactt atgtttcaac aaagaatgat      4320
     ttttgaaacg caggaatggt acacaacgga aatacaacat aaagggaaaa aattcgcaga      4380
     ataccagaaa gaattcaaaa gagataactg gcataaaacg ataaatatca atgcaaatga      4440
     aataaagact atgaatcgga tactaacagg acatgacttc tccaaatact ggctaaaaat      4500
     acttaaaata gaagaaaatg atatatgcga tgtttgccaa gtacaggaaa cgggcaaaca      4560
     ccaaatattt cactgtacaa aatacaacaa tgaaagacag aaatatccca acatccaaga      4620
     agacctattt cgcaaacact ggaaaaataa tgatggaaaa ataataaagg aaataattag      4680
     attcatacaa gacacaaaaa tctccctata atggaaaaaa accgcaagtt tgaacagcac      4740
     acaaaaacat agataacatg atcatatgaa ctttgaaaga caaatcataa acacaacata      4800
     gaaatgtcaa aaccatcatc aagtaaacaa cacaaataca acggtaccaa cattggagag      4860
     gtatatgact caggcagtcg aaaacctaag agcggtacgt ctttgaatgt ggctttatta      4920
     agcataggct ttataaaaca tagaagacta catcctgctc cacaaaagaa gaagaagaag      4980
     aagaagaaa                                                              4989
//
ID   Ag-Outcast-6 repbase;    DNA;    INV; 6411 BP.
XX
AC   .
XX
DT   21-JUL-2009 (Rel. 14.07, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Outcast is a non-LTR retrotransposon - consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Ag-Outcast-6.
XX
NM   Outcast.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6411
RA   Biedler J. and Tu Z.;
RT   "Non-LTR retrotransposons in the African malaria mosquito,
RT   Anopheles gambiae: unprecedented diversity and evidence of recent
RT   activity.";
RL   Mol. Biol. Evol 20(11), 1811-1825 (2003).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1633..5223
FT                 /product="Ag-Outcast-6_1p"
FT                 /translation="MEHLNILQTNIQSIRKNRDELTHILHDQKYHVACLQE
FT                 TWLKNEDKITIKGFNTIRTNREDGYGGSCILIKKGIKYKPIKLIDESDEIQ
FT                 ITTILIHSGNLIIISIYIAPNTTKQIIKDTLAKITHNTQNYTNIIIAGDFN
FT                 AHHTYWGDDRIDQKGNTIIEEIDNSNLIILKNNTYTYVPTDHNKRQTSIDL
FT                 TIISKKIHNVINKTILEKHIGASNHKIIKITIKKHSTEPIQHTIINMNKVI
FT                 TNIKHMKGKDIINIKHFTKKVYKIIQNSKQKINFTLKSWWNNEIKKALQDK
FT                 NIARQTFNSTKLIEHAIEFRKRTAIFKLKIKQAKEKQTERNMEKINKDTSS
FT                 KELWNLLGNISNINTTNKESNLIHNEETYAKEFMNLNFTNNKKSKFRTFFS
FT                 TNLPIDTELINSDIWKNILKQKKNTTPGLDKITYQMLRNINDESLTQIITD
FT                 GNKMWENGKINKELKQIKIIAIPKPKKNINDPNNYRPIALIPTITKVLNSA
FT                 VLLKLNKYIETKNILPEKSFGFRNKRTINQCINYFNNEINHNQRLNRISGA
FT                 IFIDLEKAYNNVSTKILVEQMIKSDIPPQIIKWTYSFLRNRTLIIESNKKT
FT                 YKMLVTDGLPQGDVMSPTLFNLYTKDIHKAINQTNTKNTIIQYADDFVILS
FT                 SGVNERELQNNLQNALNAFAIETEQLKFNINSNKTKFMIFGKSHHTIQLNI
FT                 HNNSIEHTNTYKYLGTVIDPKLNFHKHIELLRNKATNRLNFLKIISTQKNN
FT                 INPKNSLKIYRATIRNTMETGASYTLNSNKNKYKTMNSTINQALRKATGCT
FT                 KTTPINTLHAIAAEIPFNIRSRFIVRKELAKDLVYSPIIRQQLQIHKRTKY
FT                 KKKKKTIHETTYEKDNKILKQLYIAKNNDITTHIKINTKIKDTIETKTKTN
FT                 TQILKQITIENMNKYENNRPTIYTDGSIAGNKVGIGIYIKNKPQHYYYSYR
FT                 LKNFTSITTAELIAIEKALLLAQENNIDNPVIFTDSLTSCNILQKAMTENK
FT                 IEEICYNIIKTATNIKADIVWIPSHVGIDGNDRADELAKKGTLTNWFYKNK
FT                 IRYTDATQYYKKEMEEETKKWYTDLGRNKGKKFMQFQNVFKTELWHKQVNL
FT                 NGNEVKTINKILAGHDLSEFWLHKMKIVENGTCEKCLVPETGRHKIFECQK
FT                 YKRHKDISLDTLYEKWMETSGNTCKKIIEFIKENNITL"
XX
SQ   Sequence 6411 BP; 3004 A; 1161 C; 837 G; 1409 T; 0 other;
     gatgactcct acacaaaccg ttgcacagag cagatcaatc ctatcaatag tttaaaaaaa        60
     aaaaaaccct ttttcaaaca gaaccgataa atacccaatt ttggagtggc gaaaataaaa       120
     acagtttaaa aacaaagtgt tgtgttgttc ctcttttcaa agtatcctta ctaaaaaaaa       180
     atagatacat acatacagag tggaaaaaaa atcaagcaaa gtggtagaga ggggagagga       240
     agatgggggt catagacccg ggaggaaata agacattcgg gtcttatttc agcatcttgg       300
     gggaaacatc aaacaaaaac accaaaaaaa gaagaaaaat aagaggtgag cgtatcaatt       360
     taaatttcag tgaaacagtg aagaatgaag aggtgtttat ggtgttggag agtaaaactc       420
     ccggcaaaag tgtggcatgc tacaacccat ttttgttcgc aaaggcaact gaaatggcga       480
     ttggatgtag gccattacaa acgtccatgc ttagagacgg caaaatactg atgcgtgtta       540
     aaaatgaaac cgaagcaaaa aaactaaaaa atattaattt aaaacacggt gattgtgcca       600
     tcgaagtgga tgtttacgaa cacaaaactt taaatcaaag caagggaata atcagaagtg       660
     atgcgtgcag gtttttgagt gaagaagagc ttctagaagg tcttcaacct caaaatgtat       720
     cagaggtata cataatgaag agaaaaagcc aagatggtgt tctcagaaac acaagaaccg       780
     ccatcataac tttcaaatct acagtgcttc ccagaaacat agaaataggt tacttcaccg       840
     aaaaagtaga attatttatc ccaaatccaa tgcggtgcat gaaatgcatg ctctttgggc       900
     atacaaaaaa taattgcaat cgacaaaaaa tttgcgccaa atgtggagaa aactttcatg       960
     agaattgcac aaaccctcta aaatgcacac aatgcggtga aaaccactca tctttagaca      1020
     aagattgtcc agtatggaaa gacgaggtgg aaataaaaag aattcaaaca gaaaaaaaaa      1080
     taacaataaa agaagcaaga aaaattcgaa gggaaacagt gccagctatt cctagaattt      1140
     atataagaga aaaattttca tcaatagtga gaggcaatca aacgcctata atgaacgaaa      1200
     aacgaaaaat agacgaaaca agcgaaaata atagtaacac accaaaatca actgaaaata      1260
     caccaacaaa aattaacagc acaacaaata acaagtacct agataataac acagaaccca      1320
     aaaaaaatac gaatttaaca acaattacca atgatttaga aaaccacaca gaaaaggaaa      1380
     aacacacaga aatcgaaaac acagaaacac aaacgaatcc aaacgcaaca gatgaaagtg      1440
     ccaccaatat cacttactat agtgatactg aaatgtatct caatgagata gacattcaag      1500
     gaacaatcga aatagactac aaagaaacat cacagtaaaa attacaaaaa ttaaaataaa      1560
     aaccctactt atatagccca ttacacaaac aatcctaata atacttaaca ttttctctat      1620
     aaataattaa acatggaaca cctaaatata ctacaaacta acatacaaag catacggaaa      1680
     aatagggacg aactaacaca catactacat gatcaaaaat accatgtagc ttgcttgcag      1740
     gaaacatggc tcaaaaatga agataaaata acaattaaag gttttaacac aatacgaaca      1800
     aacagggaag atggatatgg aggaagctgc attctaatta aaaaaggaat taaatacaaa      1860
     ccaattaaat taatagacga aagtgatgaa attcaaataa caacaatact gatacactct      1920
     ggaaatctaa ttataatatc aatatatata gctccaaata ctaccaagca gataataaaa      1980
     gacaccttag caaaaataac acataacaca caaaattaca caaacataat aatagctggc      2040
     gattttaatg cacatcatac atactgggga gatgatagaa tcgatcaaaa aggaaacaca      2100
     ataatagaag aaatagacaa ttcaaacctc attatcctaa aaaataacac atacacttac      2160
     gtcccaacag atcacaacaa gagacagacg tccattgatt taacaattat atcgaaaaaa      2220
     atccataatg taatcaacaa aactatttta gaaaaacaca taggggcaag caaccacaaa      2280
     ataataaaaa taacaattaa aaaacactcc acagaaccga tacaacatac tataataaac      2340
     atgaataagg taataacaaa cattaaacat atgaaaggaa aagatataat aaacataaaa      2400
     catttcacaa agaaagtata caaaatcata caaaatagta aacaaaaaat caattttaca      2460
     ctaaaatcat ggtggaataa cgaaataaaa aaggccctgc aagacaaaaa tatagcaaga      2520
     caaacattca acagtacaaa acttattgaa catgccatag aattccgcaa aaggacagca      2580
     atcttcaaac ttaaaataaa acaagcaaaa gaaaaacaaa cggagagaaa catggaaaaa      2640
     ataaacaaag acacaagtag taaagaacta tggaatctgt taggaaatat tagcaacatc      2700
     aataccacca ataaagagtc aaacctaatt cacaatgaag agacctatgc taaggaattt      2760
     atgaatttaa atttcacaaa caataaaaaa tccaaattta gaactttttt cagtacaaat      2820
     ctaccgatag atacggaact tataaattca gatatatgga aaaacatact gaaacaaaaa      2880
     aaaaatacaa cacccggttt agacaaaatt acataccaaa tgctaagaaa cataaacgac      2940
     gaatcactaa cacaaatcat aacagacgga aacaaaatgt gggagaatgg taaaataaac      3000
     aaagaactaa aacaaattaa aataatagca attcctaaac caaagaaaaa tataaatgac      3060
     cccaacaact atagacctat agcacttata ccaacaataa ccaaagtcct aaactcagcg      3120
     gtattattaa aattaaataa atatattgaa accaaaaata tactcccgga aaaatccttt      3180
     ggattcagaa acaaaagaac cataaaccaa tgcattaact atttcaataa cgaaataaat      3240
     cacaaccaaa gactaaatag aataagtgga gcaatattca tagatttgga aaaagcatat      3300
     aataatgttt caacaaaaat cctcgtggaa caaatgataa aatcagacat cccacctcaa      3360
     attataaaat ggacctactc ctttcttaga aatagaactt taataataga aagcaataaa      3420
     aaaacataca aaatgttagt gacagatgga ctaccacaag gagatgttat gtcaccaaca      3480
     ctttttaact tatataccaa agatatacat aaagctataa accaaacaaa caccaaaaat      3540
     actataatac agtacgcgga tgatttcgtt attctcagca gtggagtaaa cgaaagagag      3600
     ctacaaaata acctacaaaa cgctttaaat gctttcgcaa tagaaacaga acaactaaaa      3660
     tttaacataa actcaaacaa aacaaaattt atgattttcg gaaaatcaca tcacaccata      3720
     caactcaaca tacacaataa tagcatagaa cacacaaaca catacaaata tctaggaaca      3780
     gtaatagatc caaaactcaa tttccacaaa cacatcgaac tactacgtaa caaggctaca      3840
     aacagactaa atttcttgaa aattataagc acgcaaaaaa ataacataaa ccccaaaaac      3900
     agcctaaaaa tataccgggc aacaatcaga aacactatgg aaacgggagc ttcatacact      3960
     ctcaatagca acaaaaacaa atacaaaaca atgaattcaa ctatcaacca ggcactaaga      4020
     aaagctacag gttgcaccaa aactaccccc ataaatactc tgcatgccat tgcagcagaa      4080
     atacctttca atatcagaag tagatttata gtacgtaagg aactagccaa agatttagtc      4140
     tactcaccaa tcattagaca acaactacaa atacataaaa gaacaaaata caaaaaaaag      4200
     aaaaaaacaa tacatgaaac aacgtacgaa aaagacaata aaattctaaa acaattatac      4260
     attgcaaaaa acaacgatat aaccacacac atcaaaataa atacaaaaat taaagacacg      4320
     atagaaacaa aaacaaaaac aaacactcaa atcctgaaac aaattaccat tgaaaacatg      4380
     aacaagtacg aaaataacag acccaccatc tacactgatg gaagcattgc cggaaataaa      4440
     gtaggtatag ggatatacat aaaaaacaaa ccacaacatt actactatag ctatagatta      4500
     aaaaatttca cctccataac caccgccgaa ctgatagcaa tcgaaaaggc cttactttta      4560
     gcacaagaaa acaatataga caacccagta attttcacag acagtctaac atcatgtaac      4620
     attctacaaa aagcaatgac agaaaacaaa atagaggaaa tctgttacaa tattataaaa      4680
     acagcaacaa atattaaagc agatattgta tggattccat cacatgtagg cattgatgga      4740
     aatgatagag cagatgaact ggcaaaaaaa ggcactttaa caaattggtt ctataagaac      4800
     aaaatcagat acacagacgc tacccaatat tacaaaaaag aaatggaaga ggaaacaaaa      4860
     aaatggtaca cagacctggg caggaataaa gggaaaaagt ttatgcaatt ccaaaatgtt      4920
     ttcaaaacag aactatggca caaacaggtt aacctgaacg gaaatgaagt aaaaacaatt      4980
     aacaaaatac tggcaggaca tgacctttcc gaattttggc ttcataaaat gaaaatagta      5040
     gaaaatggaa cctgtgagaa atgtctagtc ccagaaacag gacgacacaa aatttttgag      5100
     tgtcaaaaat ataaaagaca taaagacatc tccctagaca ctttgtacga aaaatggatg      5160
     gaaaccagtg gaaatacctg caaaaaaatt atagaattca taaaagaaaa caatattaca      5220
     ttatagtact tcatcacaca tatcttcaaa taaaaagaaa aattcaacaa ttttttttac      5280
     acatttccta tatcttcaaa actcacaaca tagaacctgc actcaacact ccagcaaaaa      5340
     tgatatagca ataggataag tacttactat ttatttatct atttattata tttattacat      5400
     ctattgcatt tattatattt attctattta ttatatttat tatatttatc atatttatgt      5460
     gttcaaagta tcaattttgt tcgtataatg aaacgttatt ccatgttttt ttttccttgt      5520
     tagtcaatta tttaaaacta tttattcaat catttctcag caccctattg atttatttat      5580
     ttatttatat actgtttttg gcatgactta tatatataca caaaaaatca cctaactgca      5640
     cattccaaat ccaaacacca caccacaaaa aaaataacaa taacaataat aaaatttaat      5700
     aaattcaata ataaatccga ttttacacgc atcagggggg cctcctaagt ttgggtactc      5760
     cgtttgttct tgcaaacatg agaaatccaa agacatccat ttccatcact agaggataga      5820
     aataagatgc caaaaggacc aactgaaagg gccttgtatc aaatcccccc cccccaaaaa      5880
     aaaaaaaaaa aatccaaaat aaaaaaaaaa ataaaaaaaa aaaaaaccct tttggaacct      5940
     tcacaaaaca agccatttca aaaataataa taataaaaat aaaaataaac aacccaatac      6000
     aagaacaaga accggtacaa aaaaaaaaaa aacaaaattc ctcatcctct cccaagaaat      6060
     aaaatatata tatatataca aacaccacaa aaaaaaaaga agaaaatcaa atccactaaa      6120
     ccacaagcga acttaaagat ggaacaacgc tagcttttga atacaaactg aaaaggaaac      6180
     acaaaccatc aaaaagaaaa aacgattggt gatatcacga aaaccaacac actgtgcatc      6240
     aatcagaaag atctcaacca caacatataa acatcaacga aacagcaata taaacatcaa      6300
     aggagaatgg atgatttccc ctccaaaaac tggtagtcaa acctctgatt gtaccttcaa      6360
     aaacggatgg tataggaggc ctcaacctac caaccctatt aagaagaaga a               6411
//
ID   Ag-R1-6     repbase;    DNA;    INV; 5931 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An R1 clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Ag-R1-6.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5931
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-5931
RA   Kojima K.K. and Jurka J.;
RT   "Non-sequence-specific R1 clade non-LTR retrotransposons from
RT   Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 10
CC   sequences with >93% identity. It is the most similar to R7
CC   elements but no sequence specificity is found.
XX
FH   Key           Location/Qualifiers
FT   CDS           533..1441
FT                 /product="Ag-R1-6_1p"
FT                 /translation="MELRSRPGPVECSLGARSKKPAMPTVACKESRQPLSF
FT                 RANTSSTARVTEASELRLQLDETRREKAELQALILQLQTQLESMRQQLVES
FT                 SERVDRQAKEAREDSLRRENFLREEVDRRAKEMREEARKDRELIAKMMQRQ
FT                 REQPNTQERQTRKQQDQQCQQQSSQPSSQQQKPHRQVVSNEVNEGASTSAG
FT                 IVEDPFTEVVKRGSRRWQEIRAERRQQQQHQQQLQTTSIAGGRLSVDDHQS
FT                 LHQKNLQQQRREQLNKEQHRPARKQPDKIFVAPAAGVTYFTLYQKVRLNPN
FT                 LPSAKAVLHVS"
FT   CDS           join(1450..3633,3542..5665)
FT                 /product="Ag-R1-6_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGEVTIPNIDMLATEADIRKALQIALEKEAILASINV
FT                 WEQRDGSLRARVKLPRSDANYLIDKRLIIDFSSCKVREAPKPSAESRRCFR
FT                 CLERGHMVRECQGTDRSSLCIRYGAADHKAANCTNDVKCLLCGGPHRIAAA
FT                 SCAVTSRPCLMDILQININKCRIAQDLALNTMRVEKADVLLLSELYAVPQN
FT                 NGNWVVDRDRSVAIVTSGVRYPIQRIRSVTVPGIVVADVNGITIVCCYVKP
FT                 NVSVRQFEEIMERIDILIRGHPRVLLAGDLNAWHTAWGSERTKPKGIALLQ
FT                 LVNDLGLEVLNIGTSHTFRGCGSARPSKIDVFFASPSICRPDLAANPATCW
FT                 RILSRYSYSDHFYIRYTVGEQPPREQQSGTARRQRTAVRLAGTRWNTRHFD
FT                 PTLFESALQSTRFEDRATHAKSLIESLTRACDETMLRVFPSQDHTGRPAYW
FT                 WTPAIEELVNECRIAEQQRLASPTDPDISALDRQARHALKTAIKASKKQFF
FT                 DRMLQALHDDETGQCIRKVLYRLQPSRTAQERDPVVLESVVSTLFPDHPPA
FT                 EWPTEDEHEVGNRVPLREVTDLXLQIIASGMQXRKAPGLDGVPNAALASAI
FT                 KNYPGSFRQVYQECLDRSCFPEQWKKQRLVLLLKPGKPPGDPSSFRPICLL
FT                 DNAGKTFERLLLDRLNEHLEDSDNPQLSEYQYGFRRGRSTLLAIQQVVNAG
FT                 RRAMSFGRTNNRDRRCLWGCRARRAQRVMRADEPCRSGAQTTVIGAASGVV
FT                 ALDVRNAFNTASWQCIAEALRDKGVPLQLRNILQDYFTDRELTYDTTDGPV
FT                 TRRVSAGCPQGSILGPTLWNVGYDGVLRLELPEGAQAVGXADXLAILAAGT
FT                 TPEHAAAIAEEAVERVHAWMRQHHLQLAPEKTECVMISSLRRGHPEIPIRV
FT                 CGIEIRSKQAIRYLGVMIYDHLLWRPHVTMAVEKANRVVKVVTNVMRNHSG
FT                 PRVAKRRLLAGVSEAIIRYGAPIWAEATDRQWCRRMLASVQRPLAQRVVCG
FT                 FRSMSYSVAVLMARLIPHHLLIKEDARCHQRYFADPEASRAVIRREERAVT
FT                 LEVWQREWDANASNPGASRYARWAHRLIPEVHSWMAQKRGEVGFHLAQILS
FT                 GHGFFREFLHVCGFAPSPECPECTGSVESVVHVLFHCPRFAEVRRDLLEMG
FT                 VDGSITEENLGQMLLKSSDSWIRIQEVACRITTVLQVRWREDEAALNTLAN
FT                 YTSAEATVNAEQMQDDPAAARRAARNRQARARRAQERVEQLGDVEXASAFR
FT                 QLYGPAASDATSSIPAAVPLLLEATATVDPTPVAAAVAVAEATTATSPAAE
FT                 AAPRVAAEVAPFSATTGMAPPSSSSSPNLSPRRRRQAQRQARAHMPPGRQQ
FT                 NGRAVPSAEELERRRQRQREMERARRQRQRRARDSQAVTIPFSPLPSDEMQ
FT                 ERRSTLTADEEAAISMXATSGR"
XX
SQ   Sequence 5931 BP; 1611 A; 1430 C; 1689 G; 1191 T; 10 other;
     gagtgggggt tcgacgggta gctaaaccaa ccaagtgtaa gcgggaatac gctccagaga        60
     tatttcggat aaacattatg aaacgtgtga aagggcgcgt tggaagagtg tttgttgcta       120
     aataagatgg aacactgtaa caaataagtg gagtttcttg ggaatacgct ggagaagtgt       180
     gagaaaagac gtataaaata agcgagcaat actgcgagtg gacgataata atgacaagtg       240
     acagcagggc cgtcccgttg aacattttat aatgcatgaa gcacgattta aatctaccct       300
     cgaatggaag tgttttccga ccaaaggcta acctcgtcca agcggtacca acgatctttc       360
     tgtgcatcgg gataaataag tgtggggcag tactgagttg aagtgaatta aaaaaaaaat       420
     aataataata atataaaaaa aggaaaaaga ataataatta ttattatatt acataaataa       480
     taataaaaat aaaaaaagct catcaggttc aatccaggtt accactaaca tcatggaact       540
     ccgatcccgt ccaggcccgg tagaatgcag tctcggggca aggtcaaaga agccggcaat       600
     gcctacagtg gcatgcaagg agtcacgaca gccactgtct ttccgagcta acaccagcag       660
     cacggcgcga gtaacagagg cgagcgagct gagactacag ctcgatgaga cgcgcaggga       720
     gaaagctgag ctgcaggctc tcatattgca gctccaaact caactggaat ccatgcgcca       780
     acagttggta gagagctcgg agcgtgtgga ccgacaggcc aaagaagcac gcgaagactc       840
     cttacgtcgc gagaactttc ttcgagagga agtagatcgg cgagcaaagg aaatgcgtga       900
     ggaagcaaga aaagatcgag aactcattgc caagatgatg cagcgccagc gcgagcagcc       960
     gaatacacaa gaacggcaaa cgcgaaagca gcaggatcag caatgtcagc aacaatcgtc      1020
     acagccatcg tcacaacaac aaaagccgca ccgccaggta gtgagcaacg aagtgaatga      1080
     aggagcatca acgtcggcag gtatagttga ggacccattt actgaggtgg ttaaacgagg      1140
     gtcgcgtcgc tggcaagaaa ttcgggcaga gcgccgacag caacagcagc accaacagca      1200
     attgcagaca acctcgattg cgggtggacg gctatcggtt gatgatcatc agtcactgca      1260
     tcaaaagaat ctgcagcagc agagacgcga gcagctcaac aaggagcagc atcgtccagc      1320
     ccgtaaacaa ccggataaaa tcttcgtggc gccggcagct ggagtgacgt actttaccct      1380
     gtaccagaag gttcggctaa atccgaatct gccgtcggcg aaagcggtac tgcacgtgtc      1440
     gtagcagata tgggggaagt cacaatacca aacattgaca tgctggctac ggaggcagat      1500
     atccgcaagg cacttcaaat tgccttggaa aaagaggcga tactggcctc aatcaatgtc      1560
     tgggagcagc gcgatggctc actacgagcg cgtgtgaaat tgcctcgtag tgacgccaac      1620
     tatctcatcg acaagcggct tataattgat ttttctagct gcaaggtgcg cgaagcaccg      1680
     aagccatctg ccgagtcgcg tcgatgcttt cgatgccttg aacgtggtca catggtccga      1740
     gaatgtcaag ggacggaccg atctagtctg tgtattcgct acggggcagc cgatcacaag      1800
     gcggcgaact gtaccaatga cgttaagtgc ctgttatgtg gcggcccgca tcgaattgcc      1860
     gccgcctcct gcgctgttac atcaaggccc tgtctaatgg atatcttgca gataaacatt      1920
     aataagtgca ggattgcgca ggaccttgcg ctaaatacga tgcgtgtaga gaaggcggac      1980
     gtattgcttt tgtcagagtt atatgcagtc cctcagaaca acggaaactg ggtggttgac      2040
     agggacaggt cggtggccat cgtgacgagt ggggtgcgct atccaataca acgtattcgc      2100
     agcgttacag ttcctggtat cgtcgtagcg gatgtgaacg ggataacaat tgtatgttgt      2160
     tatgtgaaac caaatgtcag tgtccggcag tttgaggaaa ttatggaaag gatagacata      2220
     cttatccgtg gccatccgag agtgctgttg gcaggtgact taaacgcctg gcacacagca      2280
     tgggggagtg aacgcactaa gccaaaaggc attgctcttt tacagctggt taatgatctg      2340
     ggacttgagg tactgaatat cgggacatcc cacacattcc ggggctgtgg atcagcacgg      2400
     cccagtaaga tagacgtatt ttttgccagt ccgtccatct gccgtccaga cctagctgca      2460
     aaccctgcaa cctgctggcg gatcctgtca cgatactcct attctgacca tttttacatc      2520
     cgctacacag ttggagaaca gccaccgagg gaacagcaat cagggacagc gagaagacaa      2580
     cgcacagcag tgcggttggc cgggacgcga tggaacacac gtcatttcga tcctacactc      2640
     ttcgagtcag cactgcagtc aacccggttt gaggaccggg ctacgcatgc taagagtctg      2700
     attgagtcac tgacaagagc ctgcgatgag acgatgttgc gcgtgttccc atcacaagac      2760
     cacaccggtc ggccagcgta ttggtggact ccggccattg aagagttggt gaacgagtgc      2820
     cgtatcgcag aacagcagcg attagcttca cccaccgacc ccgatatttc agcattggat      2880
     cgacaggctc gtcatgcgtt gaagactgcg attaaggcga gcaagaaaca gttctttgac      2940
     cgaatgcttc aagcgttgca tgatgatgag acgggacagt gcatccgtaa ggtcctgtat      3000
     cgcctacagc cctctcggac agcgcaagaa cgggatccgg tggtattgga gagcgttgta      3060
     tcgacgttgt ttccggatca tcctccagca gagtggccaa ctgaggacga acatgaagtw      3120
     ggcaacaggg tgccgcttcg tgaggtgact gatttgganc tgcagattat cgccagcggn      3180
     atgcaacnta ggaaagcccc tggtctcgat ggcgtgccga acgctgcatt ggcgtctgcc      3240
     attaagaact atccaggatc ctttcgacaa gtgtatcagg agtgcctaga caggtcatgc      3300
     ttcccngaac aatggaaaaa gcagcggctg gtactcctgc tcaagccggg caagccaccg      3360
     ggggatccat cgtccttccg cccgatctgc ctgctggaca acgcgggcaa aacgttcgaa      3420
     aggttgttgc tggatcgctt gaatgagcac ctggaagatt cagataatcc acaactgtct      3480
     gagtaccaat acggatttcg gcgtgggaga tcgacattgc tggcaatcca acaggtggta      3540
     aatgcgggca gacgagccat gtcgttcggg cgcacaaaca accgtgatcg gcgctgcctc      3600
     tggggttgtc gcgctcgacg tgcgcaacgc gtttaacacc gccagctggc aatgtattgc      3660
     tgaggccctc agggataaag gagttccctt gcaattgcgt aacattctgc aggattattt      3720
     cactgacagg gaactgacgt acgatacaac agatggtccc gtgacgcgtc gggtctcggc      3780
     cggctgtcca cagggatcta tattgggtcc tacgctttgg aacgtcggat acgacggcgt      3840
     gttacggttg gagcttcctg aaggtgcaca ggcagttggg wtcgcagacg awttggcaat      3900
     tttggcggca ggaaccacgc cagaacacgc ggcagcaatt gcagaggagg cagtagaaag      3960
     agtgcacgca tggatgcgac aacatcacct gcaattagca ccagaaaaga cggaatgcgt      4020
     catgatttcc agcctccgtc gagggcatcc agagatcccg ataagggttt gtggaattga      4080
     gatccgctcc aagcaggcga tacgctatct gggggtcatg atttatgacc accttctttg      4140
     gcgaccacac gtgacgatgg cagtggaaaa ggccaaccgc gttgtgaagg tcgtgaccaa      4200
     cgtaatgagg aaccacagcg ggccccgggt agctaagcgg agattgcttg ccggggtgtc      4260
     tgaagcgatt attcgctacg gtgcacccat ctgggctgag gccacggatc gccagtggtg      4320
     ccggcggatg ttggcaagcg tccagcgacc tctggcgcag cgagtcgtat gcggattcag      4380
     atccatgagc tacagcgtag ctgtactcat ggcaaggctc atccctcatc accttttgat      4440
     aaaggaagac gcgagatgcc accaacggta cttcgccgac ccggaagcaa gtcgtgctgt      4500
     catccgacgt gaggaacgcg cggtgacgtt ggaggtatgg caacgggagt gggatgcgaa      4560
     cgcatcgaat ccaggagcca gccgttacgc acgttgggca cacagattga tccccgaggt      4620
     gcattcatgg atggcacaga agcggggtga ggtgggcttt catcttgccc agatactctc      4680
     gggacacgga tttttccgag agtttctgca tgtatgcggc ttcgctccat ccccagaatg      4740
     cccggaatgc acaggctcgg ttgagtcagt ggttcacgtg ttgttccact gtccgaggtt      4800
     tgcagaggtt cggcgcgacc tactggagat gggagtggac ggttctataa cagaggagaa      4860
     cctcggacaa atgttgctga aaagttcaga ctcttggatc cgcattcagg aagtagcatg      4920
     ccgcatcacc acggtgctgc aagtgcgctg gagagaagat gaggcggcgc tgaatacgct      4980
     tgctaattac acatccgcag aggcgacagt caacgctgaa cagatgcagg acgacccggc      5040
     tgcagcccga cgagcggccc gtaaccgtca agcaagggcc cggagagcgc aggaacgcgt      5100
     ggagcagctt ggggacgtgg aattkgcgtc ggcgttcagg cagttgtacg gtccagcagc      5160
     cagcgatgcg acatcatcaa ttccggcagc agtgcctttg ctattggagg caacagcaac      5220
     agtagaccct acaccagtag cagcagccgt agcagtagca gaagcaacaa cagcaacatc      5280
     accggcagct gaggcagcac cacgagtagc agctgaggtt gcaccctttt cagcaaccac      5340
     cggaatggcg ccgccgtcat catcgtcatc accaaatctc tctcccagac gtcggagaca      5400
     agcgcagcgg caggccagag cacatatgcc ccccggcaga caacagaatg gtagagcagt      5460
     gccttctgca gaggagctgg agcgtcgtcg ccagcgacaa cgagaaatgg agagagcccg      5520
     acgacaacgg cagcggaggg cgagggacag tcaggccgtc acgatccctt tttcgccatt      5580
     accatcggac gaaatgcaag aaaggagatc tacactaaca gcagatgagg aagctgctat      5640
     cagcatgsag gcaacatcgg ggcgttaaac aatccgcagt atgtagggtg gcttagaaga      5700
     gctacggaag gacagtaagg tctcacgggg aaaaaaaatc gaaggaatac gacacagtat      5760
     cgtttttttt tgagttaaat taattaaatc actaataaag aaaggaaggt ccgtatggac      5820
     ggttaaacct ggtgggtaaa tccctaacgg gtaattccca ctgggaggcg caagcagttg      5880
     ggaacgaatg watattggaa ccaataaact gcttatttat atttaaaaaa a               5931
//
ID   AgaP12      repbase;    DNA;    INV; 5649 BP.
XX
AC   DQ301494;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP12 transposon P-like,
DE   complete sequence.
XX
KW   P; DNA transposon; Transposable Element; AgaP12.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5649
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-5649
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301494; Positions       1    5649.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(529..2334,2417..3244)
FT                 /product="AgaP12_1p"
FT                 /note="transposase."
FT                 /translation="MPVPCSVSLCGNNPRNVKKRALEISFHIFPNYDPLRH
FT                 AWVQFCNREENWEPSKRDVICSAHFQESDFQMPESGIVGGKVLRRTLFPNG
FT                 KFLLAYFPNDDTTNILCFCWLLAIPSIHSVLSSEIENREEVSSENFVPSTS
FT                 DTLLVSDVSNIPQNTSTAFLKENIKLREANKRLKATLSHIASENYQLKKKV
FT                 QDLEKELNSIKNSSIPPSDLIPKMKNMLKSTLTSNQVDLIIGEKKRVRWTK
FT                 EEISRALTLRYFGKKAYDYVKDDLKIYLPSPSTLQKYARTFKLREGILEDV
FT                 LVFMGNFVSSLSSRDAECILSFDEMKIKNVMEYDPSADEVIGPYNYIQVVM
FT                 ARALFKNWKQPIYIGFDKKMTKEILMNIIIKLDEKKINVAGIVSDNCSSNI
FT                 SCWRDLGAHDYTKPYFEHPITKKNIYVSPDAPHLLKLLRNWFIDHGFVFNG
FT                 TIVTAQPLRDLVEGRLGAEITPLFKLNTGHLELSSQERQNVRRAAELLSRT
FT                 TAVSLRRYMPKEKELADIIEMVDLWFSVSNSFHPNAKLHYKRSYTASEDQL
FT                 KALDDMFNFIANMIVVGKKNMQVFQKSILMQINSLKMLFVDMKAKHDINYL
FT                 STHKLNQDLLENFFSQLRQKGGTYDHPSPLNCIYRIRLMILGKSPSVLKSV
FT                 TDNENNKKNIEPDVFVTSADFENETDQLNEICVSQEHYVSATIFHEAEIVP
FT                 SLLDFDATDADDEFSATNFDSLFILNEQEKDGLEYIIGYIGRKFRDKYPYL
FT                 GQYTCNLTEDHCYSQPQSYVEHISAGGLYKPSASFLDQGLKMEEIFQRTHK
FT                 DGKLIQSKRIVNTLTDLLQTHFPDFPIEILKTFAKLRIIMRMRFFNIKKEE
FT                 IRRNKKRKTPMERQAAKKFRRIVN"
XX
SQ   Sequence 5649 BP; 1904 A; 916 C; 1065 G; 1764 T; 0 other;
     caaggtgtat atatttagaa ggttgagtta tttagagaaa tttgacattt ctcaacatga        60
     cacttctctt ccatggtcct cgcggggtag gaggaggtgg ggaagaacaa aacaaggaag       120
     ggggtgtggg tgttggtgtt gcgagcatta tttacgttca aagcttttgg ttccttcgtg       180
     cagttcggct ggtgtttatt tgatctctgt tggctttgaa ttgaaattgc taggaagtgt       240
     gttttcgttg gttatttttt agttatagtg gaatagaatt atcgctttat atcgttctta       300
     ggttttcgga taagtgataa tagctataac ttgcttagat gtgtagattc tttatgaacc       360
     gcatcaacag ttctttgaat taaatttttg ctcataattt gtttggattt ttgtgccttt       420
     tttccagtta ttttcaatta agttagttag gtttttagtc ttttaagatt tacgttaagt       480
     gtagttttat ttaatttcaa aagaacttaa aatttttcaa tttttatcat gcctgttccg       540
     tgttccgttt cattgtgtgg taacaatcca cgcaatgtaa agaaacgtgc attggaaatt       600
     tctttccaca tttttccaaa ctatgaccct cttcgacatg catgggttca gttttgtaac       660
     cgggaagaaa attgggaacc ttcgaaaagg gacgttattt gctcagcaca ctttcaagaa       720
     agcgattttc aaatgcctga gagcggtatt gttggaggta aagtgcttag aagaactctt       780
     tttcctaacg gtaagttttt attagcttat tttcctaatg atgatacaac taacatttta       840
     tgtttctgtt ggcttttagc gattccatca atacactctg tattatcatc tgaaatagag       900
     aatcgggaag aggtttcttc tgaaaatttt gttccttcaa cttccgacac tttattggta       960
     agtgatgttt cgaacatacc acaaaacacc agcacagcgt ttttaaaaga aaatataaaa      1020
     ctgcgagagg caaacaaaag gctaaaagcc acattgagcc acattgcttc tgaaaattat      1080
     cagctaaaaa aaaaagtaca ggacctagaa aaggaattaa attcaattaa aaatagtagt      1140
     atcccaccga gcgatctaat ccccaaaatg aagaacatgt tgaaatctac tctaacttca      1200
     aatcaagttg atttgataat aggggagaaa aagcgtgtta gatggacaaa ggaggaaatc      1260
     agccgtgctc tgacattgag gtattttgga aaaaaggcat acgattacgt aaaagatgat      1320
     ttaaaaatat atttaccatc accctccact ttgcaaaaat atgccagaac ctttaagttg      1380
     cgtgaaggta tcctagaaga cgttttagtt ttcatgggga attttgttag ttctttgagc      1440
     agtagggatg ccgaatgtat tcttagtttt gatgagatga agatcaaaaa cgtaatggaa      1500
     tatgatccgt cggcagatga ggttattggc ccatataatt atatacaggt agtaatggcc      1560
     agagccttgt tcaagaattg gaaacaacca atctatattg gttttgataa aaaaatgacg      1620
     aaagaaattc tcatgaatat tataattaaa ttggatgaga agaaaattaa cgttgctgga      1680
     attgtgagtg ataactgctc aagcaatatt agttgttgga gagacctcgg tgctcatgat      1740
     tatactaaac catacttcga gcacccaatt acaaaaaaaa atatttatgt atcgccagac      1800
     gcgccgcatt tgcttaaatt attgcgaaat tggtttattg atcatgggtt tgtatttaac      1860
     ggaacaattg tcactgcaca acctttgcgc gatctagtgg aaggcagatt aggagcggag      1920
     ataactcctc tttttaaatt aaacacagga catttggaac tatctagtca agaacgccaa      1980
     aatgtacgca gagcagcaga actgttgtct cgaactacag ctgtatcatt aagacgatat      2040
     atgccaaaag aaaaagagtt agctgacatt atagaaatgg tagatttatg gttcagtgta      2100
     tccaactcat tccatcccaa tgccaaattg cattacaaaa gatcgtatac tgctagtgaa      2160
     gaccaactaa aagctttaga tgacatgttt aattttatcg caaacatgat agttgtaggc      2220
     aaaaaaaata tgcaagtatt tcaaaaaagt atattaatgc agattaattc tttaaaaatg      2280
     ctgtttgtcg acatgaaagc aaagcacgat atcaactatt tatccacgca taaggtaaga      2340
     tcataaaaaa tatttaaata attacaccaa ccaatttaaa taatggtttt tatcgttttc      2400
     gttcgtatct tttcagctta atcaagacct gttagaaaac tttttttctc agttgagaca      2460
     aaaaggtggt acgtatgacc atccatctcc tttaaattgt atatacagaa tacgtctaat      2520
     gattctgggg aaatcgccaa gcgtattgaa atcggttaca gataatgaaa acaacaaaaa      2580
     aaatattgag cctgatgtat ttgtcacatc agctgatttt gaaaatgaaa cagaccagct      2640
     aaatgaaata tgcgttagtc aagaacacta cgtatcagct accatatttc atgaagctga      2700
     gattgttcct tcccttctgg attttgatgc gacagacgca gacgatgagt ttagcgcaac      2760
     aaattttgac tcactgttta ttttaaatga acaggagaag gatggccttg aatatataat      2820
     aggctatatt ggtcgaaaat ttagggataa atatccatat ttaggacaat atacgtgtaa      2880
     tttgacagag gaccattgct acagtcaacc acagtcttat gttgaacaca tatcggctgg      2940
     aggtttatac aagccatccg ctagcttcct tgaccaagga ttgaaaatgg aggaaatttt      3000
     tcaaagaact cacaaggatg gaaaactgat tcaaagtaaa cgaattgtaa atacacttac      3060
     agacctcctc caaacacatt tccctgattt cccaatagaa attctaaaaa catttgctaa      3120
     acttagaata atcatgagaa tgagattctt caatataaaa aaagaggaaa ttcgaaggaa      3180
     caaaaaaaga aagacaccaa tggaaagaca agcggctaaa aaatttagaa gaatagtgaa      3240
     ttagtcgttg tatgcattgc aaactgttgc tcattttatt tatttattta tttatttttg      3300
     ttcttgtaac tttgatttta gttttgttaa ctgttactta gttctgtttt ttgatattat      3360
     ttatgttaac ttattatttt gaatggcatc attcttgata gctttattgg aacaaactgt      3420
     gatattttat taatagatta caaaactcat taatttaaaa gatcctgtgc taaaatactg      3480
     tggtagtccc tagctggtgg agtaatcgga accggctgga gctgctggaa tctttacaaa      3540
     ctttctaaac tatttgatat agtgtgacct caaaacgtat caccgaagtt agtgtaatgc      3600
     cgttggcatt tatattttgg tattaagtat agacaaaata tagtattaag tgcaacttaa      3660
     tacagcacta aaaataataa caaaatttag agccggtctg aaggtatata cgatacacgc      3720
     gctggctcca aaaagcccgg acgtgtatga ctacaataca agtaagaaat ggctatctgg      3780
     ttgtgtcata cagtaatctg tgaagacttt ataagccaac atgacctcgc agagaagaaa      3840
     gaagagcaca ggcggaaata atgtcaaagt ctatatgtat agatatgtac agagtgcaga      3900
     gaaacatact atacaaactg aactatatca caccaaagac attacactaa cctaagtcac      3960
     acgtaaagat gtcgatctgt attattcatt ttagaatatt tgtaacgctg tcatcggctc      4020
     cgaacggttt atattattcc aacgtgttgg tagaatttcg ctaaccttcc aaagtagctt      4080
     tcgattgtgg tattataaca cgggtacgga ggtagttatc atttaaatat agtctattaa      4140
     aagtaaaatt tcatcaaact ggatattgct gtaggcggag taaaatgccg caagattctt      4200
     ataatgaact atatgcaacg aaaacgaaca aaataagtac aagctacctt tctagtctga      4260
     ccattgtgat atgatacatg ttaatcataa agtgctgaac ttgtagctat acattagatt      4320
     tcaaacgtag gatttattaa attcaaaaaa caggtattga cctgttttgt gaacgaactc      4380
     aaattgaaag gtaacaatac tacaaataaa ttattttttc gaatcagatc gaattccaaa      4440
     accaaatgtt tatgtctaca attcattact ttcacttctg agatataaat actgtaagta      4500
     tatgtttcgt ctttgtttgg gggtgatgaa gggttataaa aatatataat ggaaatttaa      4560
     actcacgtcg atcgggtgcg cggaataagc acaaatgcat tgatttcttt tgagaattat      4620
     atcatctcca attattcttt cctgaacgga agtttccgtt tacttctttt tgtactattt      4680
     ggctaccatt tgtgtgttta tgactattgc tttcggtcga tcgagtttgt gttctgatat      4740
     accattacat ccctctcatt atctgtatat actctacgct caagaaagaa tgtgtttctg      4800
     cgtataataa agcgtttttt tcactgcacg tttttatctg taaagaagta aagaaaaaac      4860
     ttgaaagaac aaataaaagg aactatctgt cgatttgagc gagatagaaa ccactcaccg      4920
     gaaggagatc actgttttca caccaccaac cgaaatatca caatgtagga taccaatctg      4980
     cagcgccact ggtcttcaat cactaccggg taaaaataca ttagcagtat aaaactgctt      5040
     ctacgtaacc atgcaatgac gataacaata ttggtggatg cttaagcttt aaccaggaaa      5100
     ttacataaaa cctttaaaga tgggaaatat atagttcatt tgtagaaaaa cagacgaaac      5160
     cgttggagag ctaaaagaga agaaagaacg actgatgaac tgaaatatta acacggaagc      5220
     tacttgcgga taatggcttt gtggctggaa aatcgttctg gtccttaagt tgggtcaaca      5280
     gatacgttcg gtggccaaat cgaactaggt agctgtagta gacgaaggtg cgagaccatg      5340
     agcagtttcg gaaactcttg cagcagctca agccgcaaag cggttttaac acaggctacg      5400
     tgataagctg gcgaaatttt aacctatttc aacggaaaat cgtcgttcat gtgattgatt      5460
     aggtcgaatg atggataaat aaaatcacaa gttaattaaa atgaactgaa ccgaaactat      5520
     tcatcggctg cttgtttctt cttgttttgg gcgaaccatg cgagcttgta aacaaatatt      5580
     gacaggtctc ccccacaatg gcgcccagaa aaagctataa aaatcaacct tctaaatata      5640
     tacaccttg                                                              5649
//
ID   AgaP12MITE205B repbase;    DNA;    INV; 206 BP.
XX
AC   DQ301487;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP12MITE205B P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP12MITE205B.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-206
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-206
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301487; Positions       1     206.
XX
SQ   Sequence 206 BP; 67 A; 38 C; 51 G; 50 T; 0 other;
     caaggtgtat ggatattagg aggtgaagtg cttcagagca aattgacatt tcacgacttg        60
     acataacaat actggaggct ccggtattat aatcggggag ggctagaggg gggtatagaa       120
     aattgtatgc gatttgacat aacaatactc aatgatggcg cccggaaaac gcgctaacaa       180
     ttcacctcct taataaacac accttg                                            206
//
ID   AgaP13MITE412 repbase;    DNA;    INV; 412 BP.
XX
AC   DQ301489;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP13MITE412 P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP13MITE412.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-412
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-412
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301489; Positions       1     412.
XX
SQ   Sequence 412 BP; 137 A; 78 C; 68 G; 129 T; 0 other;
     caaagtgtat gaatatcagg tggtctcaaa gcctgttttt catagcaaaa gttgaacgtc        60
     actttttgac agcatgggta aaaacatttc cccaaacaag ctttctgacg acttgcctta       120
     cacacaaaca atcttagaat cttcgttatt tgcactgaat tactttaaaa agcactcaaa       180
     atatatgtta ctgtaagcta aaccaaatct aaactaatta aaatccattt ttgtatgaaa       240
     atgatgccgt cgatgaggac accaatgtgt actacgtatg tgttgctaag aacaaagcga       300
     acggttccta tggaaattca cttcacccat tctgtcaaaa ggagattttt ttgatttcga       360
     aattagttgt caatttgtat gggacgagac cacctgatat tcatacactt tg               412
//
ID   AgaP13MITE592 repbase;    DNA;    INV; 592 BP.
XX
AC   DQ301490;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP13MITE592 P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP13MITE592.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-592
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-592
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301490; Positions       1     592.
XX
SQ   Sequence 592 BP; 173 A; 114 C; 109 G; 196 T; 0 other;
     caaagtgagt tgatatatca ggtgggcata tccagtgcaa tttgacgtct aaaaacgaaa        60
     gtaggaagaa aacctggttt gacagttaga ttcataacac actggatgct ttgatgattt       120
     ttctatggac tcactcctaa ctctatccaa acttttcaca attttactcg atatttgaga       180
     tcaatcggtg gtctgttgaa cagaaccaaa ggatatatgc gcaggcactc tgataaattc       240
     ctcactttca gtataacatc atattcggtt cggttggtac actgttcctt gcttgctggc       300
     agaaaggatt caataattgt tgcctatgta tcagatttgg ccaaaaaaat tgtttttttt       360
     tgaatcttta gccttcaaat cttcgtttta atccaagaac tggctaccac gtaggttttt       420
     ttggcttctt tcttcgtgct aagccagggt aaaaccacat acaatttcta cgagatttcg       480
     tttaaacttc aaggcatact agattttgtt atggaccaaa ccgtcaaatt gtgtgtcgat       540
     gtattggtga gaaagaacac cataagccca cctgatatat acactcactt tg               592
//
ID   AgaP15      repbase;    DNA;    INV; 5462 BP.
XX
AC   DQ301491;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP15 transposon P-like,
DE   complete sequence.
XX
KW   P; DNA transposon; Transposable Element; AgaP15.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5462
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-5462
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301491; Positions       1    5462.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(173..428,834..2353,2422..3267)
FT                 /product="AgaP15_1p"
FT                 /note="transposase."
FT                 /translation="MSCSCSVIYCNNGPSKAKKLGLNIKFHKFPPGGDLRT
FT                 KWIQFCGRESDWEPCNRAVICSLHFNEEDYQMLPRNSTETNPYRLYPHVVP
FT                 SKTGISTTERELGENEQNTDVCVEESRNENVTQIEPVNNVESPMIVVRSSD
FT                 LVDAGKSQESLQELRKANHVLKEKLNDCYKELNALKIENKTLKKELEKNKR
FT                 RSIEPVEFVAKIKNIFKGTLSSNQIDLIMKEKKRVQWTIEEISSALTLRYF
FT                 GKRAYRYIAIDLHYPLPALSTLQKYARKINLKQGVLVDVLVFIGNFSSGLP
FT                 RQDRECILSFDEMKVQRVLEYDQSTDEILGPHDYIQVVMARGLFRQWKQPV
FT                 FIGFDTKMTKEIMVDLIQKLNEKGVNVAAIVSDNCSANIGCWKQLGAHDYF
FT                 NPHFEHPITKKNVYIIPDAPHLLKLIRNWLIDHGFRYKDKNITIEPLRLLV
FT                 DSRLGSEYTPLFKLSSKHLNMSSHERQNVSLAAQLLSRTTATTLRRYSIND
FT                 DAKHLAEFIEKVDLWFSVSNSYSPKASLDYKKSFICSEDQVKALDDMFEMV
FT                 DNMRVIGKNNHQTFQKSILMQITSIKKIFGDMVQKHSIKYISTNKLNQDVL
FT                 ENFFSQLRQRGGVYDHPSPLACLYRIRNIILGKSPSVLLNQTHIATKDNDD
FT                 EQQIPETDSHTHRNDHRNEHFVSAIMYSRANIEPSLPDMNVVEKDTNLFYD
FT                 MNDNSSTDSSTITEFNEQEEDGFEYVVGFLGRKFKDNFPDLYLGCYTFEND
FT                 TEHSYSNPPSFVQHLSVGGLFQPSITFLDVCREMETIFLKTHKNGQFSNKK
FT                 SIVRILTNKISRKLPELPLEIVKAFSKQRIIIRMRYINLKNKEELNKRQAL
FT                 KRKAHDENRKGAKKMRKIVN"
XX
SQ   Sequence 5462 BP; 1853 A; 948 C; 1041 G; 1620 T; 0 other;
     caaggtggat ttaagaagat caggtggtgg aatatagagc attttgacgt tttgcgagtt        60
     gacgtaaggt ccccagattt ggggtttgtt tacgttgggg tttgtttaca tttgattttg       120
     cagttgttcc agttttcatc gcaggaagca ggaagttaaa agtgttttcg tcatgtcttg       180
     tagctgttca gtgatttatt gcaataatgg cccatctaag gccaaaaagc ttggattgaa       240
     tatcaaattt cataaatttc ctcccggcgg agatttaaga acaaagtgga tacagttttg       300
     cggacgcgaa tcggattggg aaccttgtaa ccgagctgtg atttgttcgc ttcattttaa       360
     tgaggaagat taccaaatgt tacctcgcaa ttctacagaa acaaaccctt atagacttta       420
     tccacatggt aggttcagag tagtaatagt agtaggttta gtttgattaa acaataaatg       480
     tactacacat attataattg acataacatt cgattcgcaa tgtgtttcct gtgtaatcga       540
     ttgtattact gttgtagagc tgagttaaaa tatgttcttt gtcggtagta aatgtatgtt       600
     ttggggaaaa agaactgaac aaaacgaaac atatggtttg gcctgttcaa aatagtaaat       660
     gttttatttg tagtctaaaa tgtaatcaac tttaacgaat ctggacggca cgaaggcgtc       720
     ggaggatacc gcaatgaaaa aaggacgttg attgttctat acaatttttt cattaattgt       780
     gataccgcta aaataacaaa aacatgtttg atttatttaa acttatattt cagtggttcc       840
     gtccaaaaca ggcatttcaa ctactgaaag agaattaggg gaaaatgaac aaaatacaga       900
     tgtttgtgtt gaagaaagta ggaatgaaaa tgttacccaa atagaaccag tgaataatgt       960
     agaaagtccc atgatagttg ttagatcgag cgatttagta gatgcaggaa aatcgcagga      1020
     atcattacag gagttgcgta aggcaaacca tgtactgaaa gaaaaactga acgattgtta      1080
     taaagaactc aatgcgttga aaatcgaaaa caaaacatta aagaaggagc ttgaaaaaaa      1140
     caaaagaagg agtatagaac cggtagagtt cgttgccaaa ataaaaaata ttttcaaagg      1200
     gactctttcc agcaatcaaa tagacctgat catgaaggaa aagaagcgtg tgcaatggac      1260
     aattgaagaa ataagctctg cactgacgtt gcgttatttc ggaaaacgag cctatcggta      1320
     catagcaata gacttacact atcccttgcc agctttatcc acacttcaaa aatatgccag      1380
     aaaaataaac ctcaagcaag gcgtattggt cgatgttctt gtttttattg gcaatttttc      1440
     aagtggattg cccagacaag atcgtgaatg tattctaagt tttgatgaaa tgaaggtgca      1500
     aagggtttta gaatatgatc aatcaacgga tgaaatttta ggaccacatg attatataca      1560
     agtggtaatg gccagaggct tatttagaca gtggaaacag cctgttttca tcggattcga      1620
     cacgaaaatg actaaagaaa taatggtaga tttaattcaa aaacttaacg agaaaggagt      1680
     aaatgtcgca gcgattgtta gtgataactg ttctgcgaat attggttgtt ggaaacagct      1740
     gggcgcccat gactatttca atccccattt cgagcatcca ataacgaaaa aaaatgttta      1800
     tataatacct gatgctccac atctcttaaa attaataaga aactggttga ttgatcatgg      1860
     tttcagatat aaagataaaa atattacgat tgaaccattg cgcctcttag tagattctag      1920
     gctaggatca gaatatactc cattatttaa actaagttct aaacacttga atatgtctag      1980
     tcacgaacgg cagaatgtaa gcttagcagc gcaattatta tcgaggacta cagcaacaac      2040
     tttaaggcgt tattcaatta acgatgatgc gaaacattta gctgagttta tagaaaaagt      2100
     agacctttgg tttagtgttt caaactcata ttcgccaaaa gctagtttgg attataagaa      2160
     atcctttatt tgttctgaag atcaggtgaa agcattagat gatatgtttg aaatggtcga      2220
     taacatgaga gtgataggta aaaataacca tcaaacattt caaaaatcaa tcctcatgca      2280
     aataacttca attaaaaaaa tattcggaga tatggtacag aagcattcaa tcaagtacat      2340
     ttcaacgaac aaggtaatat tatcgtcaaa aatgttaaat ggtatcaatg ttttactgtt      2400
     atatttattt ttctctttca gctaaaccaa gatgtattag aaaacttttt ttctcaatta      2460
     agacaacgtg ggggtgtcta tgaccatcct tcaccattgg cttgcctata tagaataaga      2520
     aatattatat taggcaagtc tccatccgtc ctattaaacc aaactcacat agcaaccaaa      2580
     gacaatgacg atgagcaaca gatacctgaa acagactcac atactcacag aaatgaccac      2640
     cgcaatgaac acttcgtgtc tgctatcatg tattcaagag caaatattga accatctttg      2700
     ccagacatga acgttgtaga aaaggataca aatttgtttt atgatatgaa tgataatagt      2760
     agtaccgata gcagcacaat aacagagttt aatgaacaag aggaagatgg atttgagtat      2820
     gttgttggat tccttggtag aaaatttaaa gataattttc cagatctata cttaggatgt      2880
     tatacatttg aaaacgatac cgagcatagt tattctaatc ctccttcttt tgttcagcat      2940
     ctgtctgttg gaggtttatt ccaaccatct ataacatttt tggatgtatg ccgtgaaatg      3000
     gaaaccattt ttttaaaaac gcataagaat ggacagtttt caaacaaaaa aagtatagta      3060
     agaatattaa ccaataagat aagtaggaaa ttgcctgaac tgccattaga aattgtaaaa      3120
     gccttctcaa aacagcgaat tattatacgt atgcgctaca ttaatttaaa aaataaagag      3180
     gagttaaaca aaaggcaggc attgaaaagg aaagcacacg atgagaatag aaagggagct      3240
     aaaaaaatga ggaaaattgt aaattagggt atttatgtta atcatatagt gcaatttgta      3300
     aataagcctg gcgttcgacc gaatttttat atcaaattta attatatcta ttgccaatta      3360
     aacatgtttt tcaaacgtaa taaaaatccc taaaacttaa tataaacgaa aaaaatccca      3420
     gtatgcgggt caaaaagttt gcaatatgga atatcaataa ttataatcaa agatatcgcc      3480
     aatctatgtt gagatttaac actcttttcc actaattttg ttcactacat tgtcaaattc      3540
     aatcaagtga aatgcaactg cactgattat aacatatgtt cttggacaaa cgacttaaac      3600
     gatcatagta ggatattaaa aaaaaaaaca ttttaaaata aatcaaccta gagtaaacac      3660
     aagcgaaaac ggctggacca agcgacaagc gaccctcaat gaacatatta tgtccgaaag      3720
     taaaacaata cgttcgatgc tacatgttcc taaacataaa cataatgctc tctattgtta      3780
     ttgaatattc taattaataa aattatacca aacatgttca acaattaatg gcaaaacata      3840
     ctgcccaaat gtaattgtta attgttagca atcaatttac caatattaaa tcaatcatac      3900
     tgagctggct tgaatatcat ccaagcctcg ttcacccggt taagatggcc tccacctcag      3960
     gttcgtagaa atggttatat aatgtccggt tccgcctgtc gtttctttct aactagtctt      4020
     tctagcaata ggtctgcgga tttatcttat tattttgtat gcttagtatg tcttggattg      4080
     gcttttagac gaccctgtgc cctagttatg ggtgtttcgg agcgcactaa cggctccgga      4140
     gccggctcca catccacggc ttcgcttcaa cggctcctga gccttaggtg aggagccggt      4200
     tccggagcta ttggtgacga gccagctccg gagccgttga agcggggccg ttggtgcaga      4260
     gccggctcag aaattgtttg gagccgacct gagccgtctc cgacttcgga gccgttttac      4320
     ccatcactac tgtgcacaat actccattgg ctccgctatc ctcattgatg cccttaatgc      4380
     tcttatcctt ggcactttga ttgtatgttc tattatgata ctaccgctat tctcatctgt      4440
     tttttttgca ttacatcagc gcaagtatac gatccaacac gctattagca acttcattcg      4500
     tcatttcata tctctctttt ggtcattttt tcatatcgag ggtagttgca caactacttg      4560
     ctcgaaatct tctggggccg aggggagccg tcggaatcgt cgaaaagttc cagccgtcca      4620
     gagtcggcac cggctatcgt tggttttata tagctggaat cgaagtcaga gtaggaatgt      4680
     ttggaagcgg ccgtgaatgc aattctggca acccattaca attccaaata cgtaatgtat      4740
     gaacatagtt cgcgaacatt tctcagggct acaatacact gttctaacct aaaaatacaa      4800
     aaaaaagctt gtagccgatc gcaaatctat cagtaaaaga ttcatttttc ttttcatctg      4860
     tgtgcgaagt tcattgcttt cccggatggg aaataatgtt gaagtgcagg agtagaatca      4920
     ggttacggaa gtatccgtcg ttttcactac agtatgcatg acgaaaacac agcctgtata      4980
     cgtatgaact atcctaaaaa atacagaaat ctagaggaga aatgcaaaaa gattattaga      5040
     tgataataat gtgctcatct atgaaatgaa atacggttag gaaatacagc gcttcaatgg      5100
     tgttttgttg aacaatgggg atgtccattt tgattgcagc cggcaactga aggtcatata      5160
     tcctacataa taaacaagaa tccattttga ttctggccga aaatgagcac tgtgccacaa      5220
     cagaacaaat gttaatgctt ttaaataaca cacataaaga caaatacata atatatatat      5280
     gtatatatat acgtaaaata atatgaacgc agctcgtgta tctatcactg tttatggacg      5340
     atgatttttg cagccggcac gagcgttgtt tacattcatg tgtaaaatga cataaggtct      5400
     ctccaagatg gcgaccccct aaaaccgcca atccaccacc tgatcttctt aaatccacct      5460
     tg                                                                     5462
//
ID   AgaP2-P12MITE326 repbase;    DNA;    INV; 326 BP.
XX
AC   DQ301482;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP2-P12MITE326 P MITE,
DE   complete sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP2-P12MITE326.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-326
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-326
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301482; Positions       1     326.
XX
SQ   Sequence 326 BP; 111 A; 63 C; 62 G; 90 T; 0 other;
     caaagtgggt agaaaggagg tgtcgtcata cagaacattt ggccatcaag gctttagaaa        60
     aaagcacaaa atcaggatcg acggcagttg tcaaatgcga cgaatgttgc tggtatacgg       120
     gtatgataaa tgaattgttt caatttaatt aatatttgta tagcactaaa aacatatatt       180
     ttgcatcaac actttataaa tcggcatttt caacgtgata ttccgcctgc tgcctgtaaa       240
     caaatatcga cggctgttgt caaactgaat ctcaaaatgg caacatgcca aacgctaaga       300
     agacacctcc tctatattcc accttg                                            326
//
ID   AgaP4MITE559 repbase;    DNA;    INV; 559 BP.
XX
AC   DQ301483;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP4MITE559 P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP4MITE559.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-559
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-559
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301483; Positions       1     559.
XX
SQ   Sequence 559 BP; 190 A; 82 C; 112 G; 175 T; 0 other;
     caaagtctat ataatacaga ggtcgagtcg tccagaacat ttgatcaaaa agcgtgggaa        60
     agttttgaca gctggatgaa aaagcttcaa tagtttcatc ttagcataca ttgaggtttt       120
     agttgttgta catgcagtgg tctgaaagca tttttggcca tttttacatc gtttgtttgt       180
     aatattgtac tttaaaaagt tgacgaatat taagaaaata tagaattata gtgaaattat       240
     caattacaac aagatcagtg cccgaaatta cgacgaaatc ttgtgcagct caagagggtc       300
     aaagctaaga ggccagattt ctgattgtgg tcatttttaa gtgatgaatt actgaaaaaa       360
     ctactccatg ccacgttcat gagaaagaaa tgtatagtta aactgagttt tgagcaaaaa       420
     atgcacaatt agccctaaaa agtgtatggt tgtttggaat cgttagtgaa cgctttttca       480
     tctaactgtc aaaaataagc tttcaaaatg gtggaccaaa atcgagctat gcatcgacct       540
     ctgtattata tggactttg                                                    559
//
ID   AgaP4MITE675 repbase;    DNA;    INV; 675 BP.
XX
AC   DQ301484;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP4MITE675 P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP4MITE675.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-675
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-675
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301484; Positions       1     675.
XX
SQ   Sequence 675 BP; 202 A; 120 C; 135 G; 218 T; 0 other;
     caaggtcctt gaaagagaac aggtcgaagc gtttagagta aaatgacaga aagccatggg        60
     aaaaattttg acagttaaag tgaacattgt ttatgtttag cgatggacgt tgctatggag       120
     cgaatggaag ttttgttcac cattttgcac tcatttcctt ttagaatatt ataagaaata       180
     gaatctaatt agaatattac atggctgatt gaatccatgg atctcattta tcattcgtcg       240
     ccgggttata agtaaaggac ggtatgcata ttgtatcagt gtgtgtcgat tggatgtttc       300
     attttactct cagtgtttca ttgaaagtaa ataggacttc tgttacctag ttggaacatg       360
     ttaaactttt cgttttccct gcaggaccgt tgaaaaccgt tggtttgtgg tcacggaatg       420
     gcaaacaatc aaaacgatta tcaacgtttc tgaacacaga gtagactgca attacgcctc       480
     cttaattctc caggagtgat tggccacaag aaatttaacc aatataatct tcctaatagt       540
     aaattcgtcc acttttccgc gttaactatt agccgtttgt ttgtaaacac tttttcatga       600
     aactgtcaaa agcgacctga aaatggcaac ctagcaacgg gctttgcatc gacctgttct       660
     ccttaataga tcttg                                                        675
//
ID   AgaP8       repbase;    DNA;    INV; 7508 BP.
XX
AC   DQ301497;
XX
DT   22-AUG-2006 (Rel. 13.08, Created)
DT   12-SEP-2008 (Rel. 13.10, Last updated, Version 2)
XX
DE   Anopheles gambiae str. PEST clone AgaP8 transposon P-like,
DE   complete sequence.
XX
KW   P; DNA transposon; Transposable Element; AgaP8.
XX
NM   AgaP8.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-7508
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-7508
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301497; Positions       1    7508.
XX
SQ   Sequence 7508 BP; 1988 A; 1499 C; 1429 G; 2011 T; 581 other;
     caaggttatt agactctata cagattatga caaaagccct ttttggccga tctccaataa        60
     aaaaatgaat gaaaaaattt tgacagacaa attggaaagg tttgtttaca atttgaacgg       120
     tttgtttaca atcagtttgc aatcggtcag tcgcaaagcc atcgttattt ccagagtgta       180
     tttcaacaac ctttatcgtt ttcaacatat tataattaat tatttattat gtcttcaaac       240
     tataagtgct ctgtagcctc ttgtaaaaac aataggtgca atgtgaagaa gatgggagct       300
     aaaatttact tccataaatt cccagagtgt ttagcaacga agcaaaaatg gattgtattt       360
     tgtggaaagg ataatcctta gatgccttct ccaaataatg ttgtatgctc ggaacatttt       420
     gtaccatctg attatcaatt aagaaacgtg caggaaatta agcaggggtc taactggtta       480
     aaacctcaag gtaagattct ataaattctg atgattattc tatttacgat ttttttaact       540
     ttttgttgtg tttacagcca ttccgtcagt tttatcgccg ttagaaaatg atagtgatat       600
     tgcattattg cactttgaca acaataccaa aaaccaaaac acaaacgaag ggagaatcgg       660
     ttgacccctg ccggaaggta agttgttacc aaattatgtg ttagtattac atactttcat       720
     ctatactaat atgcaaatca atataatttc agctggttct tcgttttgtg atgaacatat       780
     cattgaacaa agtgcaggca actttactat tgaaataaat gaaaaagatg tgtggttcaa       840
     gtgtaaagac tatgaagaga aaatatgtga tctagaatct aaacttaaat cagtagaaga       900
     caggaacgag cggttagctg atgtaaataa tcagctaagc gaaaaattga aaatatttta       960
     tggaaaagaa aaagctcata ttaagcaaat acaaacactt gaaaaagcaa ataacaaaat      1020
     taaggaagaa tggccacgaa acaaatttat agaaaatata aaagaggcac tgaaaggcat      1080
     tttatcaagc aaccaaattg atctcatttt agaaatcaag aaaacagtaa gatggtcaat      1140
     gcaagaactt tctgcagcat ttacattaaa atatttcagt caaagggctt acaaatatat      1200
     aattttttat ttaaaaattc ctctgccatc cataagaaca ttacaacgtt atgcaagcag      1260
     gattgacctt aaacaaggca ttctagatga tattttatca ttcattgggt cctttgctta      1320
     aacattgagt actatggata gagaatgtgt attgccgttc gatgagatga aggtgtctcg      1380
     tatattggaa tacgatccat cggcggatga agtggtaggt ccttttgact tttgacaaat      1440
     agtaatgatg cgcgggcttt ttaaacaatg gaaacaacct atttttattg cttttggcca      1500
     aaaaatcacc aaagatattt tgattgacat aataacaagg ttcagtgata agatgataaa      1560
     tgttgtagcg atagttagcg ataattgcca agcaaacata aaatgttgga aggagttagg      1620
     tgctagggat gacatcgaaa aaccatattt tttacatcct aaaacacaaa acaatgtata      1680
     tgtagtccca gatactccgc atcttctaaa attgttgaag aactggttat tggatcatgg      1740
     gtttgaacat aacggcaaac acatagaaac cagcaacctt ttacgtatgg tagctcaaag      1800
     aatggagtcc gaaatgactc ctttcccaac cgacaatttc aaatattttc gacgtcgggt      1860
     gtacgtcgtg tgaacgttca cccgacgtcg ggtagtcgtc gcagttaagt caatatacga      1920
     cgaagcgaaa ttttttgaaa cgaaaaacgc cacaattata gcagattttc tggagtattt      1980
     cgctcgtggt ttttgtctag gacaacggcc ataaaaaggt ggttcaaaaa gtcgataccc      2040
     tctctccccc tcactcttcc tctatgggta ccgtacgatc catctcgcta ttctcacatg      2100
     gtagcgggag tgatatcgct tatctgctgt cttctttatc cgttctccca gatcatattc      2160
     gttttgagtg acgttgcttc cccacctccc tcattcccac ctttcccttc cagcagttat      2220
     tggcgaatgc ttgaccttgc cttgtgtgct tgacttggtt tttttttttc cttcccgttt      2280
     ttttttggct gcttgatgca ttgcgcgttg gctagagccg tcgttcgaat ctggatttga      2340
     tcagcgtgca agttgtcgtg tggatgtatg aatagcttta ccgttgaagc tatttgccgg      2400
     gtcgatcgga tgcatgctgc gtacgggttt tatattgttt gttagtgcac ttagtgtcag      2460
     ttagttgcac ttgttaaaaa aatcaatcaa aagacgatca tcaatgcact agcacacaca      2520
     acatatcatg tgaagccaac caatgcttaa cattgtcaaa tattcaaatg agggatgatg      2580
     tctttgaaca catttttctc ttcatttttt tattgttttt attcaacaat gcacaattct      2640
     tccaattctc ccccccctct cctctccttc cttcccacac aatcgggaat acaggtaagg      2700
     atttaacaac catattgtac cgtctttttc ctaattaacg ggggctcctc tccggaagag      2760
     aaaaaggcac gtctcccctg cctctcgctc aatgctgtaa gcgagcaggg cccgcctcgg      2820
     cttaggtggc gcacgcttct ctcgctcgcg ttgcttagct tgcatcttct ctcgcttttt      2880
     ttggaaacgc atcatcgttg cggatggtgc tgcgcggcca tatcgctatc tagagggtgg      2940
     catagatagt tgtgttctag cccgtcgctg cactcgccat tgacgcagca tgcgtaaggg      3000
     acgtttatgc tgcatgcatt gtcgatagcg ccgcggctgc ggtcggggat tggctgtggc      3060
     gaccggcccc ccgggagcct taaatgccgg tggtgcagtc ggagccacgc gccaagctgc      3120
     tccacgtgtc cccgcattct atggatggct tagctggttt cgggccgccc gttatcgtgc      3180
     tacccgaaca caacataaca acatacccgt ccaaggttca agcccggtat ggtccagtta      3240
     gtaacccgga aaaccagtta gtaacaggta aagtcaactc gcacgaatta acaacatgct      3300
     cgttttcggt tcaatcctcg tatggactat ctctcgtagc aagggctaac tatccgaaat      3360
     ttctttccaa agtgtggctc gaaggaagaa catcgaccta caaaaaatgc atgttgctcc      3420
     cttcctgtat gtcctacccg ttcctgtatg ctcccttcag ctcgcttcgc acttgtccct      3480
     cattgtttag aacttatcgt cgctccggaa caatgcgcgc tgctgcacgc aacccacgcc      3540
     ttcatctttt catctcacct cttcgattat cacccttccc gctcctcctt ccgctcttgt      3600
     ttgccccctt tttccttact cccttccccc ttctttcctt tttattcgtg ttgctgttta      3660
     ataaggctag catagtttag gatgtaaatg taaactaaat gtaaaatgta aactgtattt      3720
     gccgtgctta aggcaaacaa tagtaaggtg cgggcagggg cggttcaacc agtacgcaat      3780
     ctaagcggcc gcgtggggcc ccgaggagag gaacccatcc ccccactcgg aagtaaaagt      3840
     gcttcgcaat ccttctctgg tttagaattc ctcatacaac ttctcgctcg acacatccga      3900
     atggtcaact ttcttgtgtc cggttagggc ctccactcgt gctaatacgc cactggatgc      3960
     gagttgacca accgggtcgg aaccatccgg atcatttggg aggtgcgatt gctttccaaa      4020
     tcactgctcc cacgagtcgg aatggtacct gccgaactac ctggcgcccc gccgactaca      4080
     tatcagcggt ccttggaacc acgtagtcga accacagccc gtggccaata agaccccaca      4140
     gctcccgtat aaattttatt cttcttcttt gacgtaacga acaatgctgt ggacagggct      4200
     aaaacttctt caccttacta aaatcaagct ataggatagt cggttcttgc tatcggggga      4260
     atggtccgga tgagaatcga tctcgtatgg cctcatagga tccggtctct tagtgatgat      4320
     gacgcagtgg atcatcaatg agtgacgatt aaaaacattc tgccgtttgg tttaaagggt      4380
     atacaatatg cggcatttta ttgttgctct tccgcataaa aagtttacca ccatgtgtcc      4440
     caaatttaca cacatcataa tactgtgttt gtggttgtgc taatcacaaa acgctttctg      4500
     tatagcgtgg cacataaacg tgcacgaggt ggtacatcat ttggtgtgcc agagccattg      4560
     cttctaacaa ttttccttta actaactaac ggatcatgag gatactgatc gttcgcagcc      4620
     aatgccacac acgggaaaaa caaggagaaa gagaattccc tcacgtggga gaaagagcag      4680
     caacaaccaa accgtagagc cgatgggatt gtgagaatgc gacgggagat catcgtctgt      4740
     gagcgagagt gaaacagaag tcagaaccat aaacttccca tccataatct gtgaccataa      4800
     tttgggtgtg tgtcttcgct ccatacaaat cgtcaaaaaa acattttcgc ttggtcggaa      4860
     atcgcggcga aaaccgcctt ttgcggatag ggtttgttca agcttacaat ggcacacatc      4920
     tatatgaccc cccaacagcg tcaaaatgtt cgtcgagctg cagaattgct gtctcgcact      4980
     accgctgtag cttttcgaac ttattaccct tacaatgaaa atgcaaaagt tttagctgat      5040
     tttattgaaa aggttgattt atggtttagt gtgtcaaatt cttgacgact aaacgacgag      5100
     cgagtgacga tcaaattggc gccttgagag atatgtttga aactgtatca actatgacca      5160
     taccaggaaa gtcaaatttg caagtattcc aacgatccat tataatgcaa atcacgtctt      5220
     tgcaaatggt ttttgcagat aggaaaaaaa aacagtcttt taggccgtcc acaaggacag      5280
     aggaggcgtg gtaggcccaa attgaggtgg caagatggcg tggaggcgtc cgccattaag      5340
     gccgggataa cggactggca gacgaaggcg cgagaccgtg agcggtttcg gacactcctg      5400
     aggcaggcca agaccgcaaa gcggttgtag cgccggataa gtaagtaagt aagaaaaaaa      5460
     aacatgatat acaattcatc tgcacacata aagtaatcaa tatttaagta tttagagttt      5520
     tgtatttaat aaagtttatt tttttatttt tcagctaaac caagacgtat tagagaattt      5580
     attttcgcaa ataaggcaaa tgggaggagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      5640
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      5700
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      5760
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      5820
     nnnnnnnnnn nnnnnnnnna cttttcgggt caacccgaac gactccgggt cgcttacgga      5880
     tggctccgac ccgataggtt cgggtcgacc cgcccatcac tattaacgat gcatttattt      5940
     tgaatggtta ctcgcaacat ttttataatt tagcttcatg caaatagtaa aattagctat      6000
     gttcaagtag actggaccaa gtgtaacaag acatcatgta ccgggtttct cttagcatgt      6060
     ttgatgtgag atgtgtaacc agaccaacca atcctcttgt tgtcctacaa aaaagaataa      6120
     aatattaatt ccataatcac aattgaatct gcacacacgc gcagagctcg catatcaaaa      6180
     tataatatca atcaacaatg tgaagttagt ggcggcttca acgataatcg gactagttac      6240
     cgcttaaggc acccggcacc ctaaatcctt tactgtgcga agcagcatat aacacttctt      6300
     ggtcgcttcg tatagcatgt ttatttcgtg cctcatgagc taagcgcgat tttttagcca      6360
     aatgattgaa accaacaagc atctgattga gcggtcagca cggttacatc aatacgtcta      6420
     gatgacggat tgacttgtaa acatagggtt gtaatgcaca cctgataccc acctgattcg      6480
     ccatcaagcg ctgaactggc cagagtcagt tatattatca gtcacctaat gctgagcgca      6540
     ccgtaggatc cactctctgg tctgcaaatc ggtccatcaa ccgacctgct gatgtcattg      6600
     tatgattagt ccatcgtccg atcagccggt tcactacccg cccggtccgg taaccatagt      6660
     ggctttccgc acttgctcct gcactcagtc gttgctcctc agataaccat gttatgttat      6720
     agaattgacg ttaatcgttc gatcgtgggc cattcattga aatcctacat tcactttgta      6780
     gaaccagcat acgcgtttga aaactttgcc cgctgcatta tttctcacag tcgccttagc      6840
     agctgattgt tgtgaaagaa gaattacggc aaagctgtaa ggatcgacca tataccgggt      6900
     ctctatgatt ggctatgctg agctaaaata taaaattatn nnnnnnnnnn nnnnnnnnnn      6960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ttatattaac tgtgggatat gttttagttt      7320
     attgaaaaag tacgcaaaag ttttgtcttc cgttaactta cctctgttgt tgatgctaag      7380
     catcaactga ttggcagcga ttttgacaga caaattgtaa gatattcaaa aagatattca      7440
     ccaagatatt caaaatggtg agctgttcaa gagctctgtc gtaacctgta tagagtctaa      7500
     taaccttg                                                               7508
//
ID   AgaP8MITE2450 repbase;    DNA;    INV; 2456 BP.
XX
AC   DQ301485;
XX
DT   22-AUG-2006 (Rel. 13.07, Created)
DT   31-JUL-2008 (Rel. 13.07, Last updated, Version 1)
XX
DE   Anopheles gambiae str. PEST clone AgaP8MITE2450 P MITE, complete
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   AgaP8MITE2450.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2456
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "P elements and MITE relatives in the whole genome sequence of
RT   Anopheles gambiae.";
RL   BMC Genomics 7(1), 214-214 (2006).
XX
RN   [2]
RP   1-2456
RA   Quesneville H., Nouaud D. and Anxolabehere D.;
RT   "Direct Submission.";
RL   Direct Submission to Genbank (30-NOV-2004)Dynamique du Genome et
RL   Evolution, Institut Jacques Monod - CNRS - Universites Paris 6
RL   Paris 7, 2 place Jussieu, Paris 75252, France.
XX
DR   EMBL/GenBank/DDBJ; DQ301485; Positions       1    2456.
XX
SQ   Sequence 2456 BP; 602 A; 628 C; 544 G; 682 T; 0 other;
     caaggttatt agactctata caggttacga cagagcgatt gagggggtta ccattttgta        60
     aaccttgttt acaatttgtc tgtcaaaatc gacgctggtc agctgatggt tgtaataaac       120
     aacataagta agattgcaga agctgaaact aacgcttcaa gttttcttca tcctaccacg       180
     ttccatcgtt agtagaatac gacttctttg ttggcctgtt caatgctgag taagttctgc       240
     tgatttgcca aggatatcat cccattgttt acccagtacc gtttgctctc caggtttgaa       300
     attgcagtca cagcttctgg ggacgagggt ttatgctgct agacggcatt gttcaaaagg       360
     gtgagaaatt atgaagtcct gaacgcgacc ctactgcgtt gggtgggaag cggcgaggct       420
     ccattccgat tcgccacaat cgtcgggttc aggttgatcg tctatgctgc tcctgttcta       480
     gttccggttc ataggaaacg aatgttcgtg ctgtcccggc tgcagtcttg ttccagtggg       540
     ggtcgaggat tcatgccgcc aacggcgggg gtccatttca tttatgctcg agtcaattac       600
     aacatcagag cgaaaaggat gtttgaagca tttgtgatgg gtaccacatc atcataggag       660
     acaaatcccc acatttgtgt gagacgagtg cattgcacgg cagacaaaag agtgtgttta       720
     aaggttggtc aagtaggtgc tctcggtagg ggtgcacggt gcggctggtg tgcggcccgt       780
     acagtatgag tatcaacatg tttattttct aatcattatt gttacaacgg gctcgttaaa       840
     cattaactca cttttacctc cttctcctac tccttggtca gcgatccaac aactcacgca       900
     cgttcttcca ttcacacact agtgaaaggc gggacaactg gaactcaccg ggtcggagca       960
     atccgaagca tcccggagtc gtgcaggtca acctgaaacg tacaaataga tgtagtaggt      1020
     gaaacgattt cgttagatac gagaaagcat aagcgattcc gacccattgg tgcagcgagt      1080
     acggatcgga tattgatctg acccaaactc gctgcaccaa cgggtcggag ccgcttatgc      1140
     tttcttacaa ctactaatca ttcgagtcaa ctcgaagtcc ttacttcctc gggtcggatt      1200
     tgtttccgac tccgcgttac cctattgcct ttttttcaac atacgttctt gttatattaa      1260
     tactatcatc gttatttttt acaaacattt aagccctcgt cccagtccta ccctgtgtcc      1320
     cgcgagggat cttggaaagg aattgttgtt tgctcataat gagcctctct ttcccctttc      1380
     acctatcacc gttagctgcc tatagctgcg acccactctg ccgcatttag cccattgcgg      1440
     ggctcctcaa cagacggtcg gtctgagctt ccctcaatta ctcggccgtc atcgtcttcc      1500
     tccgatgcaa tattcgggcc gttccttttc gtcgaacaat tgccccagca tgttcgttga      1560
     ccggtgtcgc tgtcggtaca gactcattct tacctgattc gcctcacgtc gggaagcggt      1620
     agatggtgac ggtggagggg aagaggaccg tccgccccgg agttcctctc tttcccgcgt      1680
     acgctgctct ctacgtctcg cataacgtcg ataattacga gcggcaacca cctccgctct      1740
     atgtgccgta atttcctcca gctcggcctc gcgctaagcc atgtcctcag ctgcgcgatt      1800
     ggccctttcc gcatcccagg aacgctgcaa ttccacagtt atttgtcgag cggcttcaca      1860
     gatacgactc caggtggctt ggtctcgcaa catatgctgc tgaaggttat ctggccgaac      1920
     cggatctgag ccaccctcgc caagcagctc ctgtcggaca ctagcaaaac ggggacactc      1980
     gaacatcaca tgttctgcat cctctggtac accgacacac cactggcagt ccgaggacga      2040
     cgtgaaaccc ttgatacata agtactccca gaaaaagcca tgtcccgaga gcacctgtgc      2100
     caaatggaag gacatgtctc catgtttccg tgcctgccag gttccaatgt tggccaacac      2160
     gcgatgagct catgtcttgg attctcactt actcgattct cccttgtcac aactgttaat      2220
     ttatcacaaa attagtaatt ataaaattac aaaataatta aataaagtaa aacttacaat      2280
     atttaacacc gaacactata ccattgcacg attgcaatcc agacaaattg taaacaaacc      2340
     agtcgaattg taaacaaacc attccaattt gtctgtcaaa attttcatta atttttttat      2400
     ttgaaatcgg ccaaaacggg cttttgtcgt aacctgtata gagtctaata accttg          2456
//
ID   AGM1        repbase;    DNA;    INV; 5983 BP.
XX
AC   AF060859;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   26-APR-2010 (Rel. 15.05, Last updated, Version 3)
XX
DE   Anopheles gambiae Moose LTR retrotransposon, complete sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; AGM1.
XX
NM   AGM1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5983
RA   Biessmann H., Walter F.M., Chuan S., Le D. and Yao G.J.;
RT   "AGM1.";
RL   Direct Submission to Genbank (29-JUL-1998)Developmental Biology
RL   Center, University of California, Irvine, CA 92697, USA.
XX
RN   [2]
RP   1-5983
RA   Biessmann H., Walter M.F., Le D., Chuan S. and Yao J.G.;
RT   "Moose, a new family of LTR-retrotransposons in the mosquito
RT   Anopheles gambiae.";
RL   Insect Mol Biol 8(2), 201-212 (1999).
XX
DR   GenBank; AF060859; Positions       1    5983.
XX
FH   Key           Location/Qualifiers
FT   CDS           836..1960
FT                 /product="AGM1_1p"
FT                 /note="ORF1."
FT                 /translation="MKLPVIQLPEFGGDFNDWLPFHDTFVSLIDKSDELSG
FT                 VQKLHYLKAALKGEAARLMSQFSLQMRITKCMANVGRPLWHKHLLKKRHIQ
FT                 AILRLPKIINSNLDLLRRTVDDFQRHTLVLEQLGEPIKHLSSFLVELLSEK
FT                 LDSASLAAREEAQADKSYTYSDMVEFLRKRVRLLETLANDTGETSKRQPRV
FT                 KVSVNTAAAAEKKVDMCVVCGKQGHTIVNCRRFNEFDAKKRHEVVRQHKLC
FT                 WNCLQGSHFVTSCTSRYGCQTCGKRHHTLLHAERSSSVIADDSVGSVSTMV
FT                 LANIPMQCNSTDRSSYSNVMLTTVVLFVVDANGTQHPVRALLDNGAQPNAI
FT                 SERLSQLLCLRVCVPMYPLQVWMERRLRRHVK"
FT   CDS           1960..5607
FT                 /product="AGM1_2p"
FT                 /note="ORF2."
FT                 /translation="MKVEIRSRFTQFALKLNFLVLSKVTANTPATSFSTSC
FT                 WKLPAGLALADPEFHQSGRVDMLIGASHFYTFLREGRLKLSEHGPLLVETV
FT                 FGWVVTGEVLREEAIIQQQAAQCHVMLSSENISDQLERFWKIEELHVSHFS
FT                 ADEQRCEAYYEQTVSRDETGRYIVKLPKHQQHSTMIGKSETTSLKRFAGLE
FT                 RKLFANSQLRQQYNEFMLEYIQLGHMVPVSPDNLDAATCCYLPHHPVFKET
FT                 SSTTKMRVVFDGSAPTSTGHSLNDALLVGPVIQDDLLSLIIRFRKFQVALV
FT                 PDLEKMYRQVLVHPEDRPLQRYGGAYELRTVTYGLAPSSFLATRTLQQLAE
FT                 DEGDAFPTAKDTLKKQLYMDDLIAGSNSVDGAIQLREELSALAQRGGFTFR
FT                 KWCSNSLAVLSDVPAEQLATKSSLRFDDKETISTLGICWEPEIDTFQFNIS
FT                 ITTKSERDTMRTILSMIAELYDPLGLISPVIITAKVLMQSLWRLKLSWDDT
FT                 VPEELQRNWIRFRAELPELKDFSIPRFAFAHQYRQAEIHCFTDASELAYGA
FT                 CIYIRSEAEDGSIHVNLLASKSRVAPLKALTIPRLELCGALLGARLHEKVM
FT                 AAMEIKFVAHRFWTDSTVVLDWLNAESKTWKTFVANRVAEIQAIRDAVWQH
FT                 VSGQENPADLISRGVLPHQLINNQLWKQGPQWLSERKENWPQQKERTGQIT
FT                 TDEIRSNVVLTTQIQEKNEIFTRYGSYQKLIDVVAYCFRFVHNARRLQSRI
FT                 SNSALTVKELADAKKRLVKLVQAEEFTNDLYKIHKGIPVARNSTLKLLNPF
FT                 IDNEGIIRVGGRLRNSDLNYNIKHQIVLPGFHPFTQLLIMDKHVKAMHGGI
FT                 SSTLNAVRDEIWPINGKRAVRKVIRNCFRCCRANPQPIIQPEGQLPAERVT
FT                 VNEVFSCTGLDYCGPLYLRPTHRKAAPNKCYICVFVCMSTKAVHLELVGDL
FT                 STNSFLMALDRFVYRRGKPKHIYSDNGTNFIGAKNELHQIYKMLFNDSADS
FT                 KIAKHLAKEEIQWHLIPPRAPNFGGLWEAAVKVAKTHLIRQLGSSRLSSEE
FT                 MTTVLVKIEGCMNSRPLVPLSEDPNDLTALTPAHFHITNNLKVILEPDLKE
FT                 VPMNRLGRYQLLHGYTQNFWIHWKQDYLKNLTVLHRSAKQSKQLSVGDIVI
FT                 LKDEQLPAVQWPLARVVEIHPGADGISRVATLRTASGIVKRAVSKICPLQC
FT                 SNQRMD"
XX
SQ   Sequence 5983 BP; 1808 A; 1152 C; 1427 G; 1596 T; 0 other;
     tcgttgctaa ccaaaaccat ccaacgaaaa acacattcaa attgttcgat ctcaaatgca        60
     tgcggttcta ccacagtgcc ggattatggc agctgacgtt ttgtcattct tgtgggtcta       120
     gggacgtacc gctgtgaaag gggaaccgcc tttttgtggc aattgtcacg agccgaagaa       180
     aagcgaagca cgcataaatg gtgtgtgaat aaagaagtga acttacttgc caacaaagaa       240
     caaccgactg attatttcgt gtaaaaaaaa agtaaaaata tcacaacgta gggactttca       300
     cggaacattt tggtgcaagt gaccaggata agtgcctgat tatcggtgtc aattgtggta       360
     atcataatta gtgcaaaagt tctcgcttgt tctttgctgt gtgcgtgtga gtgtgtgctt       420
     ggagctggct aggattttgt gtgcgtgtgc gcgtgtgcaa cgtattaaac agtgtgttta       480
     acgcaagtgt aacaatggcg acggcgcgag aagacaaaat tcgtggcaaa gagcaaaaaa       540
     gaaaaaacat tatagattcg atgcggcgaa tcgatttatt cgtacaaacg tacactgtgg       600
     acaagattca tgaggtgacc acaaggctcg agaggctcga gaaagtgtgg tatggttttg       660
     aagaagttca agaagagtta gacaagctaa cccttgaggg agacaacgct gaaaatgaaa       720
     agacgcgtgc agaaatggag gagctataca tgagtgttag atccaatcgc tacggctgaa       780
     gccatcgtct aatccaatag tcagcgacgt taaaccggta cccattgtgt cccaaatgaa       840
     attaccagta atacaattgc ctgagtttgg aggtgatttt aatgattggt taccatttca       900
     tgacacgttt gtgtccctga ttgataaatc agatgagctt tctggtgtgc aaaagctaca       960
     ttatttgaaa gctgcgctca aaggtgaggc agcacggcta atgagccaat tctcactaca      1020
     gatgagaatt acaaaatgca tggcaaatgt tggtagaccg ctatggcata aacatttgct      1080
     taagaaacgt catatccaag ccattttgag gctaccgaag attatcaata gcaatctaga      1140
     tttattgcga cgcactgtag atgatttcca gcgacacaca ttggtgttag aacaactcgg      1200
     tgaaccaata aaacatctta gctcattcct tgttgagctt cttagtgaga aattggatag      1260
     tgcttctctt gcggcgaggg aagaagcaca agcggataaa agttacacat acagtgacat      1320
     ggttgagttt ctgcgtaagc gtgtgcgttt gttggaaacg cttgctaacg atacgggtga      1380
     aacgagtaag cgacaaccgc gtgtaaaagt gagtgtgaac actgctgcag cggccgagaa      1440
     aaaagtggat atgtgtgttg tgtgtggaaa gcaggggcat acaatagtga attgtcggcg      1500
     tttcaatgaa ttcgatgcaa agaagcgcca cgaagttgtg aggcagcaca aattgtgttg      1560
     gaattgcttg cagggcagcc attttgtaac cagttgtacg tcaaggtatg ggtgtcaaac      1620
     gtgtggcaaa cggcatcata ccttgctgca tgctgaacga agtagtagtg taatagcaga      1680
     tgattcggtg ggttctgtta gtacgatggt gcttgctaat attccaatgc agtgcaactc      1740
     tactgaccga agctcatatt ctaatgttat gctgacaacg gtggtgttgt ttgtagttga      1800
     cgcaaatggt acgcaacatc cagtacgtgc gttgttggat aacggtgcgc agcccaatgc      1860
     gataagtgag cgattgagtc agcttttgtg cttgcgcgta tgcgtaccca tgtatccatt      1920
     acaggtgtgg atggaacgac gactcaggcg tcatgtgaaa tgaaggtgga aatccgttcc      1980
     agatttacgc aatttgctct gaaactaaat ttcttggttt tgagcaaggt aacagcaaac      2040
     actccagcca catctttctc cacatcatgt tggaaattac ctgctgggtt ggcgctcgca      2100
     gacccagaat tccatcagtc tggacgagtg gatatgctaa tcggtgcatc gcatttctac      2160
     acgtttctga gggaaggccg gctcaaactt agtgaacatg gtccattgtt agttgaaaca      2220
     gtgttcggtt gggtggtaac aggtgaagtg ctccgagaag aagctataat tcagcaacaa      2280
     gcagctcagt gtcatgttat gttatcgtcg gaaaacatta gcgatcaact tgagcggttt      2340
     tggaagatcg aagagctgca tgtttcgcat ttctcggcgg atgagcagag atgcgaagct      2400
     tattatgagc aaacggtatc acgagacgaa acaggcagat atatcgtgaa actgcctaaa      2460
     catcagcaac attctaccat gattggaaaa tcagaaacga catcacttaa gaggtttgct      2520
     ggattagaac gtaagttatt tgctaactca caacttcgtc agcagtacaa tgagtttatg      2580
     ttggagtaca tacaactcgg tcatatggtt cctgtgtcgc ctgacaacct ggatgcagca      2640
     acctgctgct accttccaca tcaccctgtg tttaaggaga caagttccac gactaaaatg      2700
     agagtggtat ttgatgggtc agcaccaact agcacaggac actctctgaa tgatgcgcta      2760
     ttggttggac cagtcatcca agatgatctt ttgagcttaa taatccgttt tcgtaaattt      2820
     caggtcgcgc tagttccgga cttggaaaaa atgtatcgtc aggtacttgt gcatccggag      2880
     gatcgaccgt tacagagata tggtggggcg tatgagttgc ggacagtaac atacggtttg      2940
     gctccttcat ctttcttagc tacaagaaca cttcagcagt tggctgaaga tgagggtgac      3000
     gcgtttccta ctgccaagga tacgctgaaa aaacaactgt acatggatga ccttattgct      3060
     gggtcaaata gtgttgatgg agctatacag ctacgtgagg aattgagtgc actggcgcag      3120
     agaggcggtt ttacttttcg aaaatggtgt tcgaattcat tagccgtttt atctgacgtt      3180
     cccgctgaac aattggcaac aaaatcatcg ttaaggttcg acgacaagga gacaattagt      3240
     acgcttggta tatgttggga accagaaatt gatacgttcc agttcaacat ttctattact      3300
     acgaaatcag agagagacac catgcgtacg atactatcaa tgattgctga actgtatgat      3360
     ccattgggat tgatttcacc tgtaattatt acagccaaag ttttgatgca atcgctctgg      3420
     cgtttgaagt tgagttggga tgatacggtg cctgaggaac ttcaaaggaa ttggattaga      3480
     tttcgagcag aattaccaga acttaaagat tttagtatcc ctagattcgc tttcgctcat      3540
     caatatcggc aagcagaaat acattgtttc acagacgcgt cagagcttgc atatggcgcg      3600
     tgcatctata ttcggtctga agctgaggat ggaagcattc atgttaattt gctagcatca      3660
     aaatcgagag tggctccact gaaggcattg acgattccta gacttgaact ttgcggtgca      3720
     ttattaggag ctcgattgca tgagaaggta atggctgcaa tggagattaa gttcgttgct      3780
     catcgatttt ggaccgattc taccgtggtg ctagattggc taaatgctga atcaaagact      3840
     tggaaaacat tcgtagcaaa ccgagttgct gagatccaag caattcgaga tgctgtttgg      3900
     caacatgtat ctggacaaga aaatccagct gaccttattt cacgcggagt tttaccgcat      3960
     cagctcatca acaatcaatt gtggaaacaa ggtccacaat ggttatcaga gagaaaggag      4020
     aattggcccc aacaaaaaga gagaacaggt caaattacaa cagacgaaat aagatcgaat      4080
     gtcgttttaa caacgcaaat acaagaaaaa aatgaaatat ttacaagata tgggtcatac      4140
     cagaagctaa tcgacgtggt tgcatattgt tttcgttttg ttcataatgc tcgtcgtctg      4200
     caatcaagaa taagcaatag tgcattgacg gtaaaggaac ttgctgatgc taaaaagcga      4260
     cttgtaaaac ttgtgcaagc tgaagaattt accaacgatc tttataaaat ccacaagggg      4320
     attcctgttg ctcgaaattc aacgttgaag cttttaaacc cgtttataga taatgaagga      4380
     ataatccgcg taggtggccg gctcagaaat tctgatttga attataatat taagcatcaa      4440
     atagttcttc ctggattcca tccatttact caactcctca tcatggacaa acatgtaaaa      4500
     gcaatgcatg gaggaatatc atcaactctt aacgcagtta gagatgagat ttggccaatc      4560
     aatggaaaaa gagctgtacg taaggtcata cgaaattgtt ttcgatgttg cagagcaaat      4620
     ccacaaccta taattcaacc tgaagggcaa ctaccagcag aacgtgttac agttaacgag      4680
     gtgttcagtt gtacgggtct agattattgt ggacctttgt atttgaggcc aacacaccgc      4740
     aaggccgcac caaataagtg ctacatttgt gtatttgtct gcatgagtac gaaagcagta      4800
     catttggaat tagtcggaga tttgagcaca aattcgtttc tgatggcact tgatcgcttt      4860
     gtttatcggc ggggtaaacc aaagcacatt tattcagaca atggtaccaa ttttattggt      4920
     gccaaaaatg aacttcatca gatctacaaa atgctgttca acgattctgc agatagcaaa      4980
     atagcaaaac atttggcaaa agaagagata caatggcatt tgataccccc acgcgcccca      5040
     aatttcggag gcctttggga agcggcggtg aaggtagcca aaacccattt gattcgtcaa      5100
     ctaggatcat cgcgtttatc atcggaggaa atgactactg ttttagtaaa aatagaaggt      5160
     tgcatgaact cgcgaccatt agttccgctt tctgaagatc ccaatgattt gacggcatta      5220
     actccagcgc actttcacat tacaaacaat ttgaaggtta ttctcgaacc tgacttgaaa      5280
     gaggtgccta tgaatcgtct gggaagatac caactccttc acgggtacac gcaaaacttc      5340
     tggatacact ggaaacagga ttatctgaaa aatcttactg ttttgcatcg gtcagctaag      5400
     caatctaagc aattatctgt cggagatata gttattctga aggatgagca gcttccagca      5460
     gttcaatggc cattggcacg tgtcgtcgaa atacaccctg gagctgatgg aatttcccga      5520
     gttgcaacac ttcgtacggc atccggtatt gtgaagcgag cagtatctaa aatctgtccg      5580
     ttacaatgca gtaatcaaag aatggattga aaactgagtg tttcaaggtg gccggtatgt      5640
     tcgatctcaa atgacctgcg gttctaccac agtgccggat tatggcagct gacgttttgt      5700
     cattcttgtg ggtctaggga gctaccgctg tgaaagggga accgcctttt tgtggcactt      5760
     gtcacgagcc gaagaaaagc gacgacgcat aaatggtgtg tgaataaaga agtgaactta      5820
     cttgccaaca aagaacaacc gactgattat ttcgtgtaaa aaaaaagtaa aaatatcaca      5880
     acgtagggac tttcacggaa cacaaattaa ccagcaatca aatcaggtga gacagaaaac      5940
     ctaccatgca ataaatgctt agcacacaca aaccgtagac agg                        5983
//
ID   Agoriino    repbase;    DNA;    INV; 8152 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Agoriino.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-8152
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-474, and
CC   7679-8152). ORF4 overlaps the 3'-LTR; There is a mutation
CC   creating a frame-shift between ORF3 and ORF4, which correspond in
CC   fact both to the env gene, the transmembrane domain being in
CC   ORF4.
XX
FH   Key           Location/Qualifiers
FT   CDS           1594..2604
FT                 /product="Agoriino_1p"
FT                 /translation="MSKKIVEKTRQGLGSSKSAGPTTRASSQIVEQVAGNM
FT                 DSGNVSHSISPTVSGVSTISTTLSPNDILSFIKELPTFDGQPSQLDKFITN
FT                 VEEIIMLIRGTDQTPYGLLLLRAIRNKVIGKADESLTLAGTSLVWDDIKEG
FT                 LKRLYGSKKSEAILLREIQSLPDNLSLGQLFSTITKIRGQLVSSVQGGNHA
FT                 TTVMEAKKQLYNEVALNSFMVALREPLRTIIRLKNPTTIEQAYECCQVEQT
FT                 FYYQGKRDRSYAERGNQGSRTNPYNNQNQRQINNRFSSGQKQYNNNGKNFE
FT                 QRNNPFKSSNVPSASLNNIETEQSEVGNQTTTNFQARASPNQPGS"
FT   CDS           2544..6101
FT                 /product="Agoriino_2p"
FT                 /translation="GRKSDNDKFSGKSLPKPTGFINGQTHGAGLPFILLHT
FT                 NDHTPLRFLLDTGSTNSFVDPLLVQPKNIQALSSPITIKTALDKHTITERT
FT                 AWKMPQEFNRTGIINLLLFKFHPFFNGLFGMDILSQLEAKIDLSKRKLFTT
FT                 DANLDIIIINNTTSNIFTIEGHTKTIIPLPVQTRQGDIICKAVAIEKDLII
FT                 SDGIYRAENGISNFEVSNYADTDRLVYVEQPIESIPYKEEEVIELHTITSD
FT                 TYTLQNTPEESQKFRFEHLNLEEKKAISKLCREFSDIFYKENEPLTFTSLV
FT                 KHNIPLTDKNPIFIKPYRYAFALRQEIKKQVNELLKQDVIRSSHSPWSAPV
FT                 WVVQKKADATGQKKWRLVTDFRKLNEKTVSDKYPIPNINDILDQLGKTKYF
FT                 SNLDLASGYHQVEMSPEDIPKTAFTVEGGHFEYVRMPFGLKNAPATFQRVM
FT                 DSVLKDLVGKICLVYLDDIIIFSPSLQEHISNLKAVFQRLREANFKVQLNK
FT                 SEFLRKEVEFLGHVVTQEGVKPNPNKIQIIKDFPCPHNRKTIKSFLGVLGY
FT                 YRKFIRDFARITKPMTKQLKGKKPVQINAEFLEAFEVCKTLLTNDPILKYP
FT                 EFDKPFILTTDASNFAIGAVLSQGSLNNDKPTCYASRTLSDAEVNYSTIEK
FT                 EMLAIIWAVKYFRPYLYGNKFTIVTDHKPLTWLMNFKEPSSKILRWRIQLM
FT                 EYDFDIIYKKGSQNVIADALSRIDHEVHTSEVVAKDTATNTITNIQIPITE
FT                 KPINDFNLQIVLQRGQTTEQKIIIPFKNKLRKYFRETTFTKENVERILKAT
FT                 LKPKKIYAIFTTEDIFKIVQEVFAQNFPQDKTFTLVRSLELLPEEKDKAKQ
FT                 EEIINKDHQNRNHRGIDESYLHLKREIYFPNMKSIIGNVIKNCEICLRLKY
FT                 DRQPPKIPYQTPEIPSAPLEIVHMDIYTISGKYNLTLIDKFSKFAWAYVVT
FT                 NRNSICIIKAFKNFVELFGIPKKLVYDQGPEFAGEVFKKFCCQYNIQLHVT
FT                 SFQQSSSNSPVERLHSTLTEIYRIITDSRKAEQLPCEHEEVLSETMLTYNN
FT                 AIHSSTKLTPYELFHGKTHTFSNSVKFNGEQDYLNQLNIFREKLYPKVKRK
FT                 LEEIVYKRTMKLNENRTDEIEIEEGDKIFRKENRRNKITPRFTIHKVLRVH
FT                 GPTFKTSRGQKIHKSKIRRTTKKQEDN"
FT   CDS           6101..7429
FT                 /product="Agoriino_3p"
FT                 /translation="LNVSAFSLFFFRFVLVSAQFISIQDINESTNPIAKIE
FT                 LGECLIIQTYKNIKHIIDLQEYESCVEQFSSTLNLIQQDETLIDAAYILEG
FT                 KIAQLREKIEILTPSGKQKRGLVNGLGSIVKSITGNMDANDGQEIEEKIDT
FT                 LKEKEAFNNEIQIRFQDVAKSINQEQAMISRFLETSQNKIFKELSKEQDQI
FT                 NKLQYINRIIYNIDRLVNHLNDLSESIIMAKIKIIPKLILDPKEITKIEEI
FT                 IRKQNITIKSKQEIYKLIKLNTYNTQDKIIFEIMIPIFKKQNYKIARIIPL
FT                 PLNKTFFIIAPKFIAYNDYKIVHLSNKCQQTANKSICDIENIETRPTNELY
FT                 IQNLLKNNHSNCDMQNTGMVTDIFEPEKGYIFIFNAKETKVKTPEGNETCI
FT                 NGSAIITYGNVTVEVNGLDYDNTIESILEHPEIIMPPTRGFQETTRWKH"
FT   CDS           7345..7881
FT                 /product="Agoriino_4p"
FT                 /translation="QHYRKYIRTSRDNYATYKRISRNNTVETLTLQRLHLE
FT                 AIDIHKRVIIASNTTTQHTSILYMIVAVLSIATIIVWKARRPVTIFTPSPE
FT                 HHVPMVALDIPSLWPSLQSGGGEELPTHRYHAYTLHRNPLDRSKFTNNVIE
FT                 PGNIVANKRMSQLQTHPLRSYISKNTMSSIGQLAGCKIIM"
XX
SQ   Sequence 8152 BP; 3274 A; 1431 C; 1405 G; 2042 T; 0 other;
     agttaccgac ccatcggtac cacgcctaca ctctccaccg aaaccccctc gatcgttcca        60
     aattcactaa caatgttatt gaaccgggaa acattgtagc taataagcga atgtcgcaac       120
     tgcagacaca tccgcttaga agctacatca gcaagaatac tatgtcaagc attggacagt       180
     tggccggctg caaaattata atgtaaacaa actgagctag ctaagatata tataaggcaa       240
     agacattttt cagaattcaa tctcaattta ctctttattc aacgttgcta acgaacggac       300
     gtgtactgtc cagacatatt ttgtatactt aaaaatataa atatcacaaa cgaaataaag       360
     tactgtattt actgaagaac acaaatggaa atttgactag agaagcgata catcatcgac       420
     gtcacctggg ccacgattga ctgaaccaag aggactccca ctctgatggt gactggcgca       480
     gccggaaaac ggaatgaact tacacaagat tatatttaag attatgcagt gagtagagtg       540
     cagtggaaaa taaattaaaa gaaacatgta gcaaatatac acagcttaaa actataaacc       600
     agtgatcggg tcaaaacaaa aaaaaaaaaa agggcctaaa tataactaaa acatacaaat       660
     aagagcacat atcacaaaaa tacacacaca caaaacacat aagcaaaatt aaactataca       720
     catataaata accaacagta tatgccgcaa atataaacag tgacgtggtg gcgaagtcaa       780
     acgctgacga cgaaactaca ttgtatgtat ttaatggcaa caaaaaaaaa aaagtactga       840
     caaagaaaaa ttcagttgct atagtcgagt ggaggatagc aaagatcaat cgctgatatt       900
     gctatactta tacattcgct tcaacaagac atcaaacgat gatgtcactg ttgttgtaaa       960
     atagctgcac aaaagaatac cacacaattt taaacacatt agtgccgtag tgaaagagtg      1020
     aagtgtagta atgatcaaac gctgatactt acttacaaac tcacgacaac agggtatcaa      1080
     acgctgagac tactgttgtt gtcacatagc acggcaagaa taaatatata aactattggc      1140
     aagtacgtat tatgtattca aaagtagcaa tatctatcgc tgatattaga ctacaaagaa      1200
     tgctgattcg atcgcaatag aagtatacat acatacatgc attcaaagtt aatgtggcac      1260
     gatcgctgac atacagagct atactcataa attcaaaact aagaaagttt cttttaattt      1320
     acaaaaaact gctgcacagc aaaagataca tatatctata aacaaacata tactaaagta      1380
     tcttacatta cagagagaac accacaaaca ctcactaaca tatacagtat aaacaaaaaa      1440
     ttattattat tacacatata acattgttaa aaacaacaca aaatattgca cacaatttgt      1500
     aacgcacatc tatcttatat aaatattcta agaacacaat atttgaaaga aaagagaata      1560
     ttaggattcg acttggaaat agcttgcgtc tagatgtcaa agaagattgt agaaaaaact      1620
     agacagggac taggctcaag taaatccgca ggcccaacta ctagagcgag tagtcagatt      1680
     gttgaacagg tagcaggtaa tatggattct ggcaacgttt ctcattcgat ctcaccaacg      1740
     gtgagtggag taagcactat atcaacgaca ttgagcccta atgatatatt atcattcatt      1800
     aaggaattgc caacgtttga tggccagccg agtcagttgg ataaattcat cactaatgtc      1860
     gaggaaataa taatgcttat taggggcacc gatcaaactc cctatggatt attacttctt      1920
     cgggctataa gaaataaagt tataggaaaa gcagatgaaa gtttgaccct agccggtacc      1980
     tcactagtgt gggatgatat taaagaggga ctcaaaagat tgtatggcag taagaagtca      2040
     gaagcgattc tccttaggga aattcaatca ctcccagata atctgtcact tggtcagcta      2100
     ttctcgacaa ttaccaaaat tagagggcag ctcgtatcat cggtacaagg aggaaatcac      2160
     gcgaccactg taatggaagc gaagaaacaa ctttataacg aggttgctct gaactcattc      2220
     atggtcgctc taagagaacc ccttagaacg attataagac taaaaaaccc tacaactata      2280
     gaacaggcct acgaatgttg tcaggtagaa caaacctttt attaccaagg aaagagagat      2340
     agaagttatg cagagcgagg caatcaaggt agtcgtacga atccgtacaa taatcaaaat      2400
     cagagacaga ttaacaatag attcagtagc ggacagaaac aatataataa taatggcaaa      2460
     aattttgaac agaggaataa cccttttaag agcagcaacg ttccctcagc tagtttgaat      2520
     aatatagaaa cggaacaaag tgaggtagga aatcagacaa cgacaaattt tcaggcaaga      2580
     gcctccccaa accaaccggg ttcataaatg gtcaaacaca tggggcgggt ttacctttca      2640
     tactattaca tacaaatgac cacaccccat taagattttt gttggataca ggttctacta      2700
     attcttttgt tgatccgtta cttgtccaac ctaaaaacat acaggctcta agttcaccaa      2760
     ttactataaa aacggcctta gacaaacata caataacaga aagaacggca tggaagatgc      2820
     cgcaagaatt taacaggaca gggattataa acttactatt atttaaattt cacccattct      2880
     ttaatggtct ttttggtatg gacatattat cacagttaga ggcaaaaatt gatctaagta      2940
     aacgtaaact gtttacgact gatgcaaatc ttgacattat aattataaat aatactacat      3000
     caaacatatt tacaatagag ggacatacta aaacaataat accactgccg gtacaaacga      3060
     gacagggaga tataatatgc aaagcagtag ccattgaaaa ggatttaatt atatcagacg      3120
     ggatatatag ggccgaaaac ggcatcagta atttcgaggt gtccaactac gcagatactg      3180
     atcgactagt atatgtcgaa caaccaatag aatcaatacc ctataaagaa gaagaagtta      3240
     tcgaattaca tacaattact tctgatacat atacactgca gaatactccc gaagaatcac      3300
     aaaagtttag attcgaacat ttaaatctag aagaaaagaa agcgatttca aaattatgca      3360
     gggaattttc ggacatattt tataaagaaa acgaaccatt aacatttact agtttagtaa      3420
     aacataatat tccgttaaca gacaaaaatc cgatttttat taaaccatat agatatgcat      3480
     ttgcattaag gcaggaaatt aagaaacaag taaacgaact actgaaacaa gatgtaatta      3540
     gatcaagtca ctcaccgtgg agtgctccag tatgggtagt acaaaagaaa gcagacgcta      3600
     caggacagaa gaaatggaga ctagttacag actttaggaa acttaacgag aagacagttt      3660
     cggataagta cccaataccg aatattaatg atatattaga ccagctaggg aaaaccaagt      3720
     atttttctaa ccttgacttg gctagtggat atcatcaggt agaaatgagt cctgaagaca      3780
     taccaaaaac agcattcaca gtagaaggcg gtcattttga gtatgttaga atgccgttcg      3840
     gtctaaaaaa cgcaccagca acttttcaaa gagtaatgga cagcgtactg aaagacttgg      3900
     ttggtaaaat atgtctagtg tatctggatg atatcattat attttcacca tccctgcaag      3960
     agcatatatc aaatttaaaa gcagtgttcc aaagacttag agaagcaaat tttaaagtac      4020
     aattgaataa gtccgagttt ttaaggaaag aagtggagtt tttaggacac gtggtcacac      4080
     aggagggggt aaaacctaat ccgaataaaa ttcagattat aaaagatttt ccatgcccac      4140
     ataacagaaa gacgataaaa tcatttttag gagtactagg atattacaga aagtttattc      4200
     gagacttcgc ccgaataacg aagccaatga ctaaacaatt gaaagggaaa aaaccagtac      4260
     aaatcaatgc agaatttcta gaagcatttg aagtatgtaa aacattactg actaacgacc      4320
     caattttgaa atatccggaa ttcgataaac cttttatttt aacaaccgac gctagtaatt      4380
     ttgctatcgg agcagtatta tcccagggct ctttaaacaa tgacaaacct acttgctacg      4440
     cgagtagaac actctcggac gcagaagtaa attactcaac aattgaaaaa gagatgttag      4500
     ccataatttg ggcggttaaa tattttcgac cgtatcttta tgggaacaaa ttcacaattg      4560
     tcacagatca taagccgcta acgtggttaa tgaattttaa ggagccaagt tcaaaaatat      4620
     taaggtggag aatacaatta atggaatacg atttcgacat aatatataaa aaaggctcac      4680
     agaacgttat agcggatgcg cttagtagaa ttgatcatga ggtacacaca agcgaagtag      4740
     tagcaaagga caccgcaacg aatacaataa ctaatataca gatacctata acagaaaaac      4800
     cgataaatga ttttaattta caaatagtat tgcagagagg acagacaacg gaacagaaaa      4860
     taataatacc tttcaaaaat aaactaagaa aatactttag ggaaacaaca tttacaaaag      4920
     agaatgtaga acgcatatta aaagcaacac ttaaaccaaa aaagatttat gcaattttta      4980
     caacagagga tatttttaaa atagtacaag aagtatttgc acaaaatttc ccacaagata      5040
     aaactttcac acttgttagg tcacttgagc tgctgccaga agaaaaggat aaagctaagc      5100
     aggaagaaat aattaataaa gaccaccaaa atagaaatca taggggtata gatgaatcct      5160
     atttacattt aaaaagagaa atatattttc ctaatatgaa aagcataata ggcaacgtta      5220
     ttaagaactg tgaaatatgc cttaggctaa aatatgatag acagccgcca aaaataccct      5280
     atcaaactcc ggaaattcca agtgctccgc ttgaaatagt acatatggat atatatacaa      5340
     tcagtgggaa gtataactta acgctaatag ataaattttc aaaatttgct tgggcctatg      5400
     tagtaactaa tagaaattcg atatgcatta taaaagcttt taaaaatttt gtggaattat      5460
     ttggaattcc taaaaaactg gtatatgacc aaggtccgga atttgcgggg gaagtattca      5520
     aaaagttttg ttgccaatac aatatccaat tacatgtcac ctcgtttcaa cagtcgtcta      5580
     gtaactcacc tgtagagaga ttacattcaa cactcacaga aatttataga ataatcactg      5640
     atagcagaaa agcagaacaa ttaccatgtg aacatgaaga agtactatca gaaaccatgt      5700
     taacatataa taacgctata cactctagta ccaagttgac accctatgaa cttttccatg      5760
     gtaaaaccca cacttttagt aactcagtga aatttaatgg agagcaggat tatttaaatc      5820
     agttaaatat atttcgagaa aagttatacc caaaagtaaa acgtaagtta gaagagatag      5880
     tatacaagag aactatgaaa ttaaatgaga atagaacgga tgaaatagaa atagaggaag      5940
     gagacaagat ctttagaaaa gaaaatagaa gaaataagat tacacctcgt ttcacaatcc      6000
     ataaagtgtt aagggtacat ggacctacat ttaaaacaag cagaggccaa aagatacaca      6060
     agtctaaaat cagaaggact acaaagaaac aagaagataa ctaaatgtct cggccttttc      6120
     tctttttttt tttagattcg tgctagtttc ggcacaattc atatcgatcc aagatattaa      6180
     tgagtccact aatcccatcg ccaaaataga actaggagaa tgcttaataa tccaaactta      6240
     taaaaatatt aaacatataa tagatctaca ggaatatgaa agctgtgtag aacaatttag      6300
     tagtacacta aatttgatac agcaagatga aacgctcatt gatgcagctt atatcctaga      6360
     gggtaagata gcccaattgc gggaaaagat agaaatacta acaccctcgg gaaaacaaaa      6420
     acggggttta gtgaacggat taggaagtat cgtaaaatca ataaccggta atatggacgc      6480
     caatgatggc caagagatag aagaaaaaat agacacatta aaagaaaaag aagcatttaa      6540
     caatgagata caaataagat tccaagatgt agcaaaaagc attaaccaag agcaagctat      6600
     gataagtcga tttttagaaa catctcaaaa taaaattttt aaagaactat cgaaagaaca      6660
     ggaccaaatt aataaattac aatacattaa tagaataata tataatatag atcggcttgt      6720
     aaatcattta aatgatctat cagaaagtat aataatggct aaaataaaaa taatacctaa      6780
     gctaatacta gatccaaaag agatcacaaa aattgaagag atcataagaa aacaaaatat      6840
     tactatcaaa tcaaaacaag agatatacaa attaattaaa ttaaatacat ataatacaca      6900
     agataaaata atatttgaaa ttatgatacc tatattcaaa aaacaaaatt ataaaattgc      6960
     tagaattata ccattaccgc tcaacaaaac attttttata atagcgccta agtttatagc      7020
     atataatgat tataaaattg tacacctttc gaacaaatgc caacaaactg ccaacaaatc      7080
     catttgcgat atagaaaaca ttgaaacacg accaacaaac gaattatata tccagaattt      7140
     actaaagaat aatcacagta attgtgacat gcagaatact ggcatggtca cagatatatt      7200
     tgaaccagaa aagggataca tcttcatctt taatgcgaag gaaactaaag taaaaacacc      7260
     agaaggcaat gagacctgta taaacggatc ggcgataata acttatggaa atgttacagt      7320
     agaagtaaat ggactggact atgacaacac tatagaaagt atattagaac atccagagat      7380
     aattatgcca cctacaagag gatttcaaga aacaacacgg tggaaacact gacactgcaa      7440
     agattacatc tagaagcaat agacatacat aagagggtaa tcatcgcaag taacacaaca      7500
     acacagcaca cgtccatcct ttatatgata gtggcagtac tatccatagc aacaatcatt      7560
     gtctggaaag caagaaggcc tgtcacaatc tttacaccaa gtccagaaca tcatgtaccc      7620
     atggtcgcgc tggatatacc gtcactatgg ccatcgcttc aatctggggg gggggaggag      7680
     ttaccgaccc atcggtacca cgcctacact ctccaccgaa accccctcga tcgttccaaa      7740
     ttcactaaca atgttattga accgggaaac attgtagcta ataagcgaat gtcgcaactg      7800
     cagacacatc cgcttagaag ctacatcagc aagaatacta tgtcaagcat tggacagttg      7860
     gccggctgca aaattataat gtaaacaaac tgagctagct aagatatata taaggcaaag      7920
     acatttttca gaattcaatc tcaatttact ctttattcaa cgttgctaac gaacggacgt      7980
     gtactgtcca gacatatttt gtatacttaa aaatataaat atcacaaacg aaataaagta      8040
     ctgtatttac tgaagaacac aaaaggaaat ttgactagag aagcgataca tcatcgacgt      8100
     cacctgggcc acgattgact gaaccaagag gactcccact ctgatggtga ct              8152
//
ID   ALA_DM      repbase;    DNA;    INV; 52 BP.
XX
AC   X57622;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster ALA-D DNA repeat region.
XX
KW   ALAD; ALA_DM; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-52
RA   Hickey A.D.;
RT   "ALA_DM.";
RL   Direct Submission to Genbank (13-FEB-1991)D.A. Hickey, University
RL   of Ottawa, Dept. of Biology, 30 George Glinski, Ottawa Ontario,
RL   K1N 6N5, Canada.
XX
RN   [2]
RP   1-52
RA   Magoulas C. and Hickey A.D.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X57622; Positions     334     385.
XX
SQ   Sequence 52 BP; 15 A; 21 C; 12 G; 4 T; 0 other;
     acagtcgcca cagcagcagc aacagccgcc gccctatgaa tcgcccaagg ac                52
//
ID   AlKe1_AL    repbase;    DNA;    INV; 183 BP.
XX
AC   Y11729;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Acricotopus lucens DNA for tandem repeat sequence AlKe1.
XX
KW   AlKe1_AL; tandem repeat.
XX
OS   Acricotopus lucens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Acricotopus.
XX
RN   [1]
RA   Staiber W., Wech I. and Preiss A.;
RT   "Isolation and chromosomal localization of a germ line-specific
RT   highly repetitive DNA family in Acricotopus lucidus (Diptera,
RT   Chironomidae).";
RL   Chromosoma 106(5), 267-275 (1997).
XX
DR   Genbank; Y11729; Positions       1     183.
XX
SQ   Sequence 183 BP; 59 A; 30 C; 33 G; 61 T; 0 other;
     aacataatgt gaaaaataca caaaatggca ctttttggaa aaattctcat tgtgacccct        60
     atgaagatat atcagattgg tgtttgatat actcagttat atatcaatcg atgcgtcttg       120
     gcaccagcaa caatttgata ccattttgag cgctctagga cgtttgtgat agaatttatt       180
     gtc                                                                     183
//
ID   AlKe6_AL    repbase;    DNA;    INV; 175 BP.
XX
AC   Y11730;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Acricotopus lucens DNA for tandem repeat sequence AlKe6.
XX
KW   AlKe6_AL; tandem repeat.
XX
OS   Acricotopus lucens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Acricotopus.
XX
RN   [1]
RA   Staiber W., Wech I. and Preiss A.;
RT   "Isolation and chromosomal localization of a germ line-specific
RT   highly repetitive DNA family in Acricotopus lucidus (Diptera,
RT   Chironomidae).";
RL   Chromosoma 106(5), 267-275 (1997).
XX
DR   Genbank; Y11730; Positions       1     175.
XX
SQ   Sequence 175 BP; 68 A; 29 C; 22 G; 56 T; 0 other;
     aacataatgt gaaaatacac aaaaaaaagt tgattttttc tataatttga actttacaac        60
     aaataagtac aaactaaaat tcatcaaatc atatatcaat cgatgcgtct tggtaccagc       120
     aacaatttca taccattttg agcgctctag gacgtttgtg atagaattta ttgcc            175
//
ID   AMARI       repbase;    DNA;    INV; 897 BP.
XX
AC   .
XX
DT   31-OCT-2005 (Rel. 10.11, Created)
DT   31-OCT-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from Apis mellifera (a consensus).
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   Interspersed repeat; AMARI.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   1-897
RA   Jurka J.;
RT   "AMARI: Mariner-type DNA transposon from honeybee.";
RL   Repbase Reports 5(11), 341-341 (2005).
XX
DR   [1] (Consensus)
XX
CC   Present in multiple copies >90% similar to consensus. The
CC   consensus sequence was derived from Genome Assembly Amel 3.0
CC   available from BCM-HGSC.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..809
FT                 /product="AMARI_1p"
FT                 /translation="KWSVIRYNNVEWIINHEKVDAGFSSKIILSDEAHFHL
FT                 DGFVNRQNCRVWGSEKPRVISEKQMHPQRVTVWCGFWAGGIIGPYFFENEA
FT                 GQAATVNGARYRDTITRFFLPKLDDIDVADMWFQQDDATCHTANETIQLPH
FT                 ETFPGRVLSRFGDQNWPPRSCDLTPLDFFLWGYLKSKVYVDNPTTTRALQE
FT                 EIKRCIDEIQPQLCRKVMKNLDERVRMCPMCYSINNPILCTL"
XX
SQ   Sequence 897 BP; 271 A; 175 C; 196 G; 255 T; 0 other;
     taaagggtgt cccaaaatta acgcaagatt tgaatttgcc gccatttttg catcaagttg        60
     ttggcaagcc tgaaaaaaga acagtttgac agctgagagt ttagggttag taaaaatgga       120
     gcgttatacg atacaacaac gtggaatgga ttattaatca tgaaaaagtg gatgctggtt       180
     tttccagcaa aataatccta agcgacgaag cacattttca cctcgatggc tttgttaatc       240
     gccaaaattg ccgtgtttgg ggttcggaga agccacgtgt gattagcgaa aaacaaatgc       300
     acccacaacg tgtcactgtt tggtgcggat tttgggcagg aggcatcatc ggaccatact       360
     tttttgagaa cgaggctggt caagcagcaa ctgttaatgg tgctcgatat cgcgacacga       420
     taacacggtt ctttctgccg aaattggatg atattgatgt ggccgatatg tggtttcaac       480
     aagacgatgc cacgtgccat acagccaatg aaacgattca attaccgcac gagacatttc       540
     ctggtcgtgt actctctcgt ttcggtgatc agaattggcc ccctagatcg tgcgatttaa       600
     cgccattaga tttcttctta tggggttatt tgaagtcaaa ggtctatgtc gacaatccca       660
     caaccacacg tgcattacaa gaggaaatta aacgctgcat cgacgaaatt cagccacaat       720
     tatgcagaaa ggtgatgaaa aatttggacg aaagggtgcg tatgtgcccg atgtgttatt       780
     ccataaataa ccctatccta tgtactttat gattcgctta aaaaataaat atctaaagac       840
     taaaaactct cttttatatt taattcaaat cttgcgttaa ttttgggaca cccttta          897
//
ID   AMPLICON_AA repbase;    DNA;    INV; 2680 BP.
XX
AC   AF065437;
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-MAR-2009 (Rel. 14.04, Last updated, Version 2)
XX
DE   Aedes albopictus type I dihydrofolate reductase amplicon repeat
DE   region.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element;
KW   type I dihydrofolate reductase; amplicon repeat region;
KW   AMPLICON_AA.
XX
NM   AMPLICON_AA.
XX
OS   Aedes albopictus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Wang H.Z. and Fallon M.A.;
RT   "Similarities to a LINE element shared by Anopheline and Culicine
RT   mosquitos map to the distal end of dihydrofolate reductase
RT   amplicons in Aedes albopictus mosquito cells.";
RL   Insect Biochem. Mol. Biol 28(8), 613-623 (1998).
XX
DR   Genbank; AF065437; Positions       1    2680.
XX
SQ   Sequence 2680 BP; 791 A; 515 C; 669 G; 704 T; 1 other;
     gaattcgaat atcggtgtcg gataaggggg agctctaggg gtccatcaga ctaccagagt        60
     acagtactgt cggtgaggaa aaaacggtag aaaatggttt tctccgaaga gagttttttt       120
     tttaatctat acgagatgct cgaggaggac ctgcaagcac tcggagtttt cgagcgacgc       180
     gtgctaagta cggtcttcgg cggtgtgcag gaaaacggtg tgtggcggag aaggatgaac       240
     cacgagctca ctgcacttta cggcgaaccc agcatccaga aggtggccaa agccggaagg       300
     atacggtggg cagggcatgt cgaaagaatg ccggacaaca accctgcaaa gctggtgttt       360
     gcaactgatc cggttggcac aagaaggcgt ggagcgcaga gagcacgatg ggtggaccag       420
     gtggagcgtg acttggcgag catcgggcgc gaccgacgat ggagagcggc agtcacgaac       480
     cgtgttatta tggagaaata ttgttgattc agttttatct tgaatttgat gtaatactaa       540
     ataaatgaat gaatgaatga cgagataccc aaattcggaa gtcaggcact ctatacacat       600
     ctgtgagctt ccgcgtgtga aagagtgctt gttcagtgag aatttcaata gtggatttat       660
     tgatttcgaa aagaatcatt atttccaaat gactcgtgcg atagcggggg gtttcaaaga       720
     ttgtgtatgt ttgaatgccg ctgctaaagt agttcgggtt cggaaacggt gctgaaattc       780
     gtttcgagag tgtaggaatg tgctgtctat ttcgcgtttt cacgtagaac ggtcaatggc       840
     gctacgcctt ccagtagttt ttcattgtta agttcctatg actgcagttt tgtttcgtgt       900
     tttttcacgt atgtggctat taaactacca ccatgccatc agtgattcgc gagggactag       960
     agaatcaccc cgtgtggctc aacactcgta attccgtggg agctaaagtg acgagtgttc      1020
     aaatgatgac tgactgcaag cgcaacggtg gcgggacgaa aaggaagcct gactgcacaa      1080
     tgaagacgtt gccttggcga tggcagcgct accttggatt ggaaggattc cggtgagaat      1140
     gttccgatta cttttattac aacaaaatga actaaatacg cgccagtttc aaagattttt      1200
     tttgaatcag gaagtgtgtt tgcattacca ttatccaaat gataacggta atgtacacat      1260
     gcggggctta ttgtaagtga aagtgacttc tgaatggacg tgtctctcca gccattctga      1320
     aatgggtctc tgaatctgca atagagctat caccttctaa ctcccggact aaagcttttt      1380
     gcaaaagcat caaaatgata ttgcagaaaa ctttcttcca taataccact gccggacagt      1440
     gggggttagt tggatcacac acacacacac aggcactcta tacacatctg tacgcgaatc      1500
     gaatgcataa ttccaaaagt taggtatctc gcaaagattt taagaaaaaa aataattttc      1560
     ggtggagggc agtcctaaac gacgacgccg agagcactgt caagtatgtg gtacgaagtc      1620
     aacagaacta gcgatacgac taggaatgta gagcaatttt tgaagtgaag gactaatgga      1680
     atgtgaggaa atagaatgtg ctgtgccgtt ctcgaaataa cacgtaagtt ctaccagaag      1740
     ctcaacgcat tccgcaaaag cttggtgcca caagccgaaa tctgccagaa taagaacagg      1800
     agcctcttga tgtaaaaaat gaggtgattg atatgtggaa gcagcactcc gacgagcacc      1860
     tgaacggcga anagaatgta gaatgtaggt gtcaaaaagc agacaaaaat gctacacaat      1920
     gggatgagct gggcctagca gtcggggtat gatcttcacg taatccgacc aatttgtctg      1980
     ttttgtggat ggcatggata taattgctag aacatttaga acggtggctg aactgtacac      2040
     ccgcttgaaa tgtgaagcaa aagtcgcagt gtggtggcga atgccgtttt caataaacat      2100
     ggaagttcta cccggagatc aacgcgcccc gctatggctt catgccgcga gctaagctgt      2160
     acagggataa ttgacggatg tacgcgagac gattgaaaga tggaagcagt acttcgacga      2220
     gcacctgcca ccgtatatta ttgattgcaa aagaacgtgg gtgattgcgt tacaatggac      2280
     agatgtttgt cattcgctag gtgttgcaga aatgccgcat ttataatgtg tccatgcgtc      2340
     acctgttcat cgtgcatttg tttttttttt ttgtataagt tttaaaactc tcacccctac      2400
     ttgatcacta atttgaatcc taaaaatatg tttctataaa tgtgaagaaa caggttgata      2460
     cccgattctt ggtttgcacg ggtcgttttc tttaagctct caactcatat ttaactaatt      2520
     gacaattttt gtacaaaaaa tcaagtcaat aggttcaaca ttgactaagt tgtagcagaa      2580
     aaatgacacc tgaaaaaatc acgatctcca aataaaaaat cttattagta tccagtctct      2640
     tataccaact gactgaaagg acggaacgac actggaatca                            2680
//
ID   ANM4        repbase;    DNA;    INV; 1885 BP.
XX
AC   AF126012;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Antheraea mylitta mariner transposon Anm4.2 transposase
DE   pseudogene, complete sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ANM4.
XX
OS   Antheraea mylitta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Saturniidae; Saturniinae; Saturniini;
OC   Antheraea.
XX
RN   [1]
RP   1-1885
RA   Nagaraju J., Prasad D.M. and Nurminsky I.D.;
RT   "Cloning and characterization of mariner-like elements from
RT   silkmoths.";
RL   Unpublished.
XX
RN   [2]
RP   1-1885
RA   Nagaraju J.;
RT   "ANM4.";
RL   Direct Submission to Genbank (03-FEB-1999)Centre for DNA
RL   Fingerprinting and Diagnostics, CCMB Campus, Uppal Road,
RL   Hyderabad, Andhra Pradesh 500007, India.
XX
DR   GenBank; AF126012; Positions       1    1885.
XX
SQ   Sequence 1885 BP; 582 A; 396 C; 372 G; 535 T; 0 other;
     atccccggga aattctcgat caccacggcc atagactgca ccacaatacc gagaagagtc        60
     gcaggtgcgt tggcagcttg ttttagtggg aagggtgagg gagaagagga agaagggata       120
     aggagggata taggtttcca gcgtggcgtt aaaaatgtaa agaaaattct ttatttttca       180
     taacataata ataagtcttt acctatgaaa ttgccgttct gcagtactgg cctctcaaat       240
     caaaataatt tttgtttggc taacaattct aaattcaaat taattttatt ttaaaaacat       300
     ggaattcttt tttccaaaat tagtcatttg tttattgatt actgttacat tttcatcgca       360
     ttttcaatct tttttgtcgt catggatacg ttaaaaattc gaataattat ggaatatgag       420
     taccgtcgtg gcagcaacgc ggcacaagag gcacgcaaca tgtcattgac gtttacggag       480
     ctaacactac aaaccaacgc acaacttgtt attggtttgc tcgctttccg ttttgggaat       540
     ttcgacctga aaaatgaacc tcggggtcgt ccgaagacta tggtcgacaa tgacgaatta       600
     aaggcgattg tggaagctga tgatacacaa tctacggcta aattagcagc agctttcgac       660
     gttagcgtca aaacaatatt ggtctatttg cgtgaaattg gcaagggtaa aaaagcttta       720
     caggatgggt gctccacgaa cttcaatgat tcgccagcgc gaagtacgcg tcgagacgtg       780
     ccttgcacta ctcaacagac acacaaatga aggaattttg aaccgcattg ttacctgcga       840
     tgaaaaatgg actctgtttg ataactgcaa gcactcagca agttggttgg atcctgttca       900
     gcacctaaat aatgccctaa acgagaactt actcctagaa atctgatggt cactgtttgg       960
     tggtgtagcg ccggtgtgat tcatcacagc ttcttaccaa acgtggtgag cattactgct      1020
     gatatgtact gtgaagaact gaacccaatg atggagaagc tggcacgtct ccaaccagca      1080
     ttggtctaaa ggtctctccg ctgttcttgc aagacaacgc acgacctcat actgcacagc      1140
     agacggtgtc taaattgcaa gaactggggt tggaagttct ccgtcatccg cccttactca      1200
     cctacagaat actacttttt ccagaatttg gacaactcct tggcgggaaa atgaattcaa      1260
     tacccgagag gcagacaaaa tgcctttgaa agaatttgtt gcctcccgtt cagctgattt      1320
     ctttaagaag gacatcaata aactgccact gcgttggcga agatgcattg attgcttagg      1380
     tgatttcttc gattaataca aaaaaaatta catgaataaa attcgtttaa atttttcata      1440
     tacaacggca atttcataga taaagaccta tagataatgt tacatgaaac gcaatatgtt      1500
     tactaatata ccaaattatg cttatgtgta gtaaaagtaa aaacaataaa tattatgtaa      1560
     caacatatta atttagattt ttacatatcc ccattccccc attatgtatc ttttcaactg      1620
     ttttccattt tttttttatt gtagcacggc aaaattactg cactatgcct gatgataagc      1680
     acagtgcaat ccaaatataa tagccgacca cccgattccc cacactatcc atcgcccggt      1740
     cgtccactat ccccccgggg ctgggaaaaa cccggaaatt gccaggggga atttccccaa      1800
     aaaccacaac cccccaaaaa aaaaaaaaac ccctttttgg ggttttcccc aatacattgg      1860
     tggttgcaac catcaggctg ttgaa                                            1885
//
ID   ARS406_DM   repbase;    DNA;    INV; 353 BP.
XX
AC   J01069;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 406.
XX
KW   ARS406; ARS406_DM; Origin of replication; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-353
RA   Selick H. and Kauffman S.;
RT   "Direct submission.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
DR   GenBank; J01069; Positions       1     353.
XX
SQ   Sequence 353 BP; 133 A; 54 C; 60 G; 106 T; 0 other;
     ctcagtgaag tatgacatta tatattctga caaatatttt taatgttgcg gcaaaataaa        60
     tgattatttg aagacctaaa tgtggaaaaa cagattctgc caaaatgttg atatttacaa       120
     acgaaatttt cgttataact tggctaaaaa tggtcacata gatgtaagaa taactgtttt       180
     gagcagccac aagcaattta tactatatta catatttatt tattattaaa tacgtacatt       240
     tcaacacttt ttataaaaaa tacaggagga aaaaaagcgc ggcaaagtcg aaaatggagt       300
     gaccgcacac tcggcttggc gaaggacttc tcccaggcgt acatcttaat aag              353
//
ID   AY1_DH      repbase;    DNA;    INV; 690 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   21-JUN-2001 (Rel. 6.05, Last updated, Version 3)
XX
DE   D.hydei y chromosome-specific ay1 repetitive sequence.
XX
KW   AY1 repetitive sequence; AY1_DH.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RA   Vogt P. and Henning W.;
RT   "Molecular structure of the lampbrush loops nooses of the Y
RT   chromosome of Drosophila hydei.";
RL   Chromosoma 94, 449-458 (1986).
XX
RN   [2]
RP   1-690
RA   Jurka J.;
RL   Direct Submission to Repbase Update (JUN-2001).
XX
DR   [2] (Consensus)
XX
CC   This repeat may be a Gypsy-related non-autonomous fragment.
XX
SQ   Sequence 690 BP; 228 A; 144 C; 132 G; 180 T; 6 other;
     ccaaanaatt gtccgttgat nctagtgtca gatgtgaaat gccattcgac attataaaag        60
     cagtcctgaa ctagaagcaa agttcgtcga ccaacaaaca cttctcttga ctacccaaaa       120
     tgccgaaatt gcggattttt tcgctgaaat agtaagccga caaccgttta gcgagctgtc       180
     atgtacctga tgctgggtaa aggaatgcaa ccggtagatg tagaattttt gcagaattaa       240
     aggaaatcta ranttcctca aaagttctcg gactacctgg aagaggcaac acacatatac       300
     aggcatataa tctgtccngt cagtcactaa gacaaactgc gagagatatt cagtatactt       360
     taaaattaac attggcaaat taattctaga gaccccgtag ttatatgtat cccaaagaat       420
     ttccgttgat cctagtgtca gatgtgaaat gccattcgac attataaaag cagtccttaa       480
     ctngaagcaa agttcgccga ccacgaaaca cttctcccga ctacccaaaa agcctaaatt       540
     gcgaattttg attctgaaat agtaagcagg cagccgctta gcgagctgtc atttacgatg       600
     agatatccaa cgtatttgcg ttgtacctag tgtcagatgt gaaatcccat tggacattat       660
     aaaagcagtc ctgaactaga agcaaagttc                                        690
//
ID   BACSAT      repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   02-AUG-1999 (Rel. 4.07, Created)
DT   02-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Bacillus satellite DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; BACSAT.
XX
OS   Bacillus lynceorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Phasmatodea; Verophasmatodea;
OC   Areolatae; Bacilloidea; Bacillidae; Bacillinae; Bacillini;
OC   Bacillus.
XX
RN   [1]
RA   Mantovani B.;
RT   "Satellite sequence turnover in parthenogenetic systems: the
RT   apomictic triploid hybrid Bacillus lynceorum.";
RL   Mol. Biol. Evol 15(10), 1288-1297 (1998).
XX
RN   [2]
RP   1-316
RA   Jurka J.;
RT   "BACSAT.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 316 BP; 84 A; 39 C; 41 G; 152 T; 0 other;
     agatctgtat ttgttgattt atttcatttc catttgtatc gattcagctt attttggtta        60
     ttttacatta atatgatcaa gtagattcca tttccactca tttcacttat atccttttat       120
     ttatagtgtt ataattcatg catttaaaca ggttaattcg gttctttaaa taacacttat       180
     ttcattataa atgggttatt ttgatgcatt atattgattt ttaacttcat tttatttgtt       240
     ttaacatatt tgggtagaaa tcatttcatt tctattgtaa caagtgtttt tgtttggcga       300
     atcaggtttc cgaatg                                                       316
//
ID   Bag320_BR   repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Bacillus rossius rossius satellite Bag320 sequence.
XX
KW   SAT; Satellite; Simple Repeat; Bag320_BR; satellite sequence.
XX
OS   Bacillus rossius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Phasmatodea; Verophasmatodea;
OC   Areolatae; Bacilloidea; Bacillidae; Bacillinae; Bacillini;
OC   Bacillus.
XX
RN   [1]
RA   Cesari M., Luchetti A., Passamonti M., Scali V. and Mantovani B.;
RT   "Polymerase chain reaction amplification of the Bag320 satellite
RT   family reveals the ancestral library and past gene conversion
RT   events in Bacillus rossius (Insecta Phasmatodea).";
RL   Gene 312, 289-295 (2003).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 243 BP; 69 A; 31 C; 30 G; 113 T; 0 other;
     ttcggttatt tcacaatttt ttgttcaaga agattacttt tccacacatt tcagtccatt        60
     tctatgattt atttcgttac aatccattca tttaatcgtt gaaatttggt tctatttaaa       120
     taagattata tcgttataaa tgggtttttt gatacctttg caagtaatta tatcaaactt       180
     catttttttt atttaagtaa atttgggtgc aagatgattt atttctattg tatccagaga       240
     ttt                                                                     243
//
ID   Baggins-1_NVi repbase;    DNA;    INV; 5066 BP.
XX
AC   .
XX
DT   15-FEB-2009 (Rel. 14.02, Created)
DT   23-JUL-2010 (Rel. 15.08, Last updated, Version 2)
XX
DE   Non-ltr retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   Baggins-1_NVi.
XX
NM   Baggins-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5066
RA   Jurka J.;
RT   "LINE retrotransposons from the parasitic wasp Nasonia
RT   vitripennis.";
RL   Repbase Reports 9(2), 483-483 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1255..4944
FT                 /product="Baggins-1_NVi_1p"
FT                 /translation="MRVAVLSNKMADRGQRNSVNNMNGAGSVPDTTIEFTQ
FT                 INLHHCKSASAVLARRMAGVRTGICLIQEPWIHNGKIAGLNGIGTLISGSP
FT                 VSTRTCLIVKGLQVETVPKYCSRDLCTARVSYKGTEGERKVIMIAAAYFPY
FT                 EEACPPEEMVALIRECEAEGTKLIMGCDANAHHTCWGSTDCNSRGESLLEF
FT                 LAATNMDFLNTGSRPTFRNAVREEVIDITLASRNVWSEVMDWRVSEEVSMS
FT                 DHQHIVFRLGGQSTLDQLIRNPRKTNWVGYREELKAKISCFPVTYGTAEDI
FT                 DHCSRILRDIIISSYENNCELRLKRPSKGAPWWNKSLEKRRKKVRRLYNRS
FT                 KHTKSDKDKRAYRAEQKEYKKEIEKAGVEGWKRYCKSRSTLSDTARLCSVL
FT                 QHPKKPLTDSIRLVTGDWAKNGQEALXGLMETHFPDFREGARSEAVQLMAR
FT                 GEDWRLAKRVTDKARIRWAIGTFEPYKAAGPDGIFPALLQQGMDVLVPALE
FT                 KLYRACLALGYVPEEWGQARVAFLPKPGKTQHAVAKDFRPISMTSFLLKTL
FT                 ERLVDRYIEESSLVEAPLHSKQHAYQTGKSVDTALVDAVSFIQKGMKNRGL
FT                 VLVAFLDIEGAFNYTTGEAISAGMEEHAIPATVARWISVMLRTRTIVAAWG
FT                 AYSCKGVVRKGCPQGGVLSPTLWCLVVDSLLCILNEAGINAQAYADDIVIL
FT                 IRGDDEDVLAGLMQFALGLVEKWCNKVKLGVNPNKVSVMLCTNRYKTKPME
FT                 GLQLHGVPLKLVKEVKYLGVTLDARLNWGKHIKDKCEKAIGTFWACRRAFG
FT                 NTWGLEPDKVRWLYDAIIKPRLTHGALVWGHKCELKTHTGALDRVQRLVMG
FT                 GITGSMRTTPTVAMERLLELPPLGKVIRANACRTFCRIAESTNCSDFKDAA
FT                 LLEQVMPLMEERGCDRMAERIYFSKPFSIIIPEREEWKTGSHELLENSVVW
FT                 FTDGSKNENGVGAGAWEKGDTQEIVCSLDHYATVFQAEIRAITEAAKWLLE
FT                 RGTGQRTVSFCSDSRAALMALDSISISSKEVLRCRQALESLAEHNAVRLVW
FT                 VPGHSGVVGNEKADRLAGRGADGIRARRCAVAVPTCEVNRAIKDWLNSQLS
FT                 DKWTNANGLRQARALMGSSPPEEWLRTIRGLSRNRLRLAVGWLTGHWRVGY
FT                 HLWNLRLRDSGSCRWCEYETETTSHLLCECPAFAGTRQRVWGVPMLGLEEL
FT                 RLKSLASICRVAEAINKGL*"
XX
SQ   Sequence 5066 BP; 1399 A; 1136 C; 1589 G; 937 T; 5 other;
     gcacgtatgt ccaccagggt cactcgaggg ggactgactg cgtcgatctg agggtaccgt        60
     aggaaaacta ggttgtctgg cgctcctagg ccgtcggata gtacaggggc ccgggtcagc       120
     ctaaccagca tgacctggct gccctatcag ccgacgaaaa atcccgcctg acctaacagt       180
     gccggttggt gaccggatag ggccatgttg ggttgggcgg ggggccctgc tgaggccaca       240
     ggtgtcgggg ttggcttctc cgcggtgggt ggcttctggg gggcgtactg gtccgggatg       300
     cgggggcggg gcttggtcca cacacactaa cacacccgta taacatacaa aataaaatgg       360
     aaaagaataa aacgcaggaa acggttgcaa aagtgccagc aacaaaggag ctccccagct       420
     caaaccaagt cctcacggac ggtattctga aagaccgggc ggctgtcgtc aagacggcaa       480
     ataccggtgc aagttcccag gagagtcacc gggcggctgc ggggtccgcc ccagcggcaa       540
     ataccggtgc ctcctcggga actgaaaata gtaaggtaaa gaaaagaaac aggcacgcta       600
     ataggaagct agcctcgggg gcgaagctaa ggacgaagcg tctggaggac gctcctgggg       660
     ggtctcaggt tgggaccctt gcgggcgcga ccaaaagaca gcactccgac agctccaccc       720
     cgagggagct taaaaagagg tccgttgggg acgctccaaa gagctacagg acttaaggtg       780
     gccatcgttc cggtcaagta cccggaagag cgccttgacg aggaccaggg aaagaaggcc       840
     ttggaggggg agattgatga cgccccggac ggaggctatt ttccaagttt cttggacaat       900
     tggttccaga ggggtgcaca gatctggtta cttacactaa atggtgtggg aggacccaac       960
     tcaaggctat tgggagacct ccagacgatg atcccggagt gcatactccg gaggtcgtgg      1020
     tgaagcgctt gaaaaggcag aaggtggrag ggraaaaaag gaggagacgg cattcgggtg      1080
     tgctggaaag gactgaggtc gaggcactga aggcccttga cttcagacct ttctgtggag      1140
     gcggcagggc acatgtcgtc ccgttcaagg aaaagacaga ggaagagccg ggacagacgg      1200
     aagtagaggt tatggaggtc gatcccggcc ttaataaggt aaacatagag gtagatgcgg      1260
     gtagcggtgc tctcgaacaa gatggctgat cgggggcaac gcaacagcgt gaacaatatg      1320
     aatggggccg gatctgtacc ggacaccacc atagagttca cgcagattaa tctgcaccat      1380
     tgcaagagcg cctcggccgt tctggctaga cgtatggcgg gggtgcgtac aggtatttgc      1440
     ctaatccaag aaccttggat tcacaacggc aaaatcgcag gcttaaacgg aataggtaca      1500
     ctgatcagcg gcagtcccgt ctcgactaga acgtgcctta ttgttaaggg gcttcaggta      1560
     gagacggtgc caaagtactg ctcaagggat ctatgtacgg ctagggtaag ctacaagggt      1620
     accgaaggtg agcggaaagt cattatgatt gccgcagcat actttcctta tgaggaagcg      1680
     tgcccaccag aggaaatggt cgcattaatt agagaatgcg aagccgaagg caccaagctt      1740
     ataatgggtt gtgacgcaaa cgcacatcac acatgttggg gcagcacaga ctgcaattct      1800
     agaggagaaa gtctattgga gttcttagca gcaacgaaca tggactttct caatacgggc      1860
     agcagaccca cgttccgaaa cgccgtaagg gaggaggtca tagacatcac cctggcctcc      1920
     aggaacgtgt ggtccgaggt tatggactgg agagtgtcgg aagaagtctc catgtcggat      1980
     caccaacaca tcgtgttcag acttggcgga caaagtacgc tcgatcagct cataaggaac      2040
     cctaggaaaa caaactgggt aggatacaga gaagaactta aggctaagat cagttgcttc      2100
     cctgtcacat acgggacggc ggaggacatc gatcactgca gtaggatcct aagggacata      2160
     ataataagtt cttacgagaa caattgtgaa cttaggctga agaggccatc gaagggcgct      2220
     ccctggtgga ataagtcact ggagaaacgc agaaagaaag taaggcggct atacaaccgg      2280
     tccaagcaca cgaagagtga caaggacaaa cgggcgtata gagcggagca aaaggaatat      2340
     aagaaggaga tcgaaaaggc cggggtggag ggttggaagc gatactgcaa aagccgaagc      2400
     acgttatcag acacggccag gctgtgcagt gtcctgcaac acccgaagaa gccactgaca      2460
     gactcgatca gattagtaac aggggactgg gcaaagaatg gacaggaggc cctaragggc      2520
     ctgatggaaa cccactttcc agacttcagg gaaggggcga ggtcagaggc cgttcagctg      2580
     atggcccgcg gagaggactg gagactggcg aaacgggtaa cagacaaggc aaggataagg      2640
     tgggctatag ggacgttcga gccctacaag gcggcaggtc cggacggcat tttcccggct      2700
     ctgctgcagc agggcatgga cgtattagtc ccagccttgg agaaattgta ccgagcctgt      2760
     ctggcactag gatatgtgcc ggaagaatgg gggcaggcga gggtggcttt cctgcccaaa      2820
     ccaggtaaga cacaacacgc ggtcgcaaag gacttcaggc caatcagcat gacctcgttt      2880
     ttactcaaaa ccctggaaag gctggttgac agatatatcg aggagtcatc actagtagaa      2940
     gcgccgctgc acagcaagca gcatgcctac cagacaggaa agtcagtgga cacagcgttg      3000
     gtggacgcgg ttagcttcat tcaaaagggc atgaaaaaca ggggtttggt attggtggct      3060
     ttcctagaca tcgagggggc tttcaattac acgaccggcg aggcgatttc agcaggtatg      3120
     gaggagcacg caataccagc aactgtcgcc aggtggatca gcgttatgct gaggaccagg      3180
     acgatagtgg ctgcctgggg agcgtactct tgcaaaggag tggtgaggaa gggatgccca      3240
     caaggagggg tgctgtcacc gacactatgg tgcctggtgg tggacagctt gctctgcatc      3300
     ctgaacgagg ctggtataaa cgcacaggca tatgcagacg acatcgtcat cctgattagg      3360
     ggggacgacg aggacgtgct agcaggtcta atgcagttcg cactgggcct ggtggagaaa      3420
     tggtgtaata aagtaaaact gggggttaac cccaacaaag tcagtgtcat gctgtgtacg      3480
     aacaggtata aaaccaagcc gatggaaggg cttcaactcc atggagttcc cctgaaattg      3540
     gtaaaggagg tcaaatacct gggagtcacg ctcgacgcca gactcaactg ggggaaacat      3600
     atcaaagata aatgcgagaa agcgataggc actttctggg cctgcaggag ggcttttggc      3660
     aatacctggg gtctagaacc ggataaagtg agatggctat atgatgcaat cataaaacca      3720
     agactcactc atggggcact ggtatggggc cacaaatgtg agttgaaaac tcacacaggg      3780
     gcactagaca gggtgcaaag attggttatg ggaggaatca cgggatccat gcgaacgaca      3840
     cctacggtcg ctatggaaag actgttggaa ctccctccac taggcaaggt aataagggca      3900
     aatgcgtgca ggacgttctg cagaatagcg gaatcaacga actgttcgga tttcaaggat      3960
     gcggcacttc tggaacaagt aatgccgcta atggaagaaa gaggttgtga cagaatggcg      4020
     gaaagaattt atttctctaa gccgttctcg atcataatcc cagaaaggga agaatggaag      4080
     acgggttcac acgaactcct cgaaaacagt gtggtgtggt ttaccgatgg ctcaaaaaat      4140
     gagaacggtg taggagcagg tgcctgggaa aagggggaca cacaagaaat tgtgtgctcg      4200
     ctcgaccact atgctacggt tttccaggca gaaatcaggg ccattacaga agctgctaaa      4260
     tggctgttgg agagaggcac aggacaaaga actgtaagct tctgctcgga tagcagggca      4320
     gctctcatgg cgctagacag tatcagtatc tcctcaaaag aggtactaag gtgcagacag      4380
     gcgctggaat cactggcaga acacaacgcg gtgagactgg tgtgggtacc aggacactcc      4440
     ggcgtggtgg gtaacgaaaa ggcggacagg ttagcgggta ggggcgcgga cggcattcga      4500
     gcaagaaggt gcgcagtcgc tgtcccaacc tgcgaggtta atagagcaat taaagactgg      4560
     ctcaactcgc aactgagcga caaatggacc aatgccaatg ggctaagaca ggctagggct      4620
     ctgatgggca gcagcccacc tgaggagtgg ctgcggacca ttaggggcct aagcaggaat      4680
     aggttgaggc tggccgttgg ctggctgacg ggacattgga gggtaggata ccacctgtgg      4740
     aacctgagac taagggactc cgggagctgc aggtggtgcg agtatgaaac ggagaccacc      4800
     tcccacctgc tgtgtgaatg cccagctttt gcagggacaa gacagagggt gtggggggtt      4860
     cccatgttgg ggttagagga gctaaggtta aaaagcttgg catcaatttg ccgagttgcc      4920
     gaagctataa acaagggttt ataaagtaat tacttatggt acaggaggca cagcacaatg      4980
     ggcttcgcct gagtgctcga ccggcacgtc cccgtgcagg ggccgccgca gttcacctcc      5040
     rcccaacgtg actawgacta tgacta                                           5066
//
ID   Baggins-2_NVi repbase;    DNA;    INV; 3705 BP.
XX
AC   .
XX
DT   15-FEB-2009 (Rel. 14.02, Created)
DT   23-JUL-2010 (Rel. 15.08, Last updated, Version 2)
XX
DE   Non-ltr retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   Baggins-2_NVi.
XX
NM   Baggins-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3705
RA   Jurka J.;
RT   "LINE retrotransposons from the parasitic wasp Nasonia
RT   vitripennis.";
RL   Repbase Reports 9(2), 484-484 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..3614
FT                 /product="Baggins-2_NVi_1p"
FT                 /translation="MPNTRTLASRGEIRGLGGAGRIFRDPTCSVPRACILV
FT                 KGFDALLLPARCSRDLTAIKIRLPVGEGSEREVVVASGYFPYDSQEEPPPR
FT                 EVQDLVEYCRQRSIPLILGCDANAHHIVWGSSDTNGRGDALLQYLVTTSLC
FT                 IMNRGREPTFYNSVRSEVIDLTLCTVGMEGWVGSWRVSNEPSLSDHRYIQF
FT                 EWKERCSETRAFRNPRKTDWAFFRENLRNELQSFKPSFGTTDELDHWAFEL
FT                 GEIVNISFQRSCPWTIPRGTWGTPWWNRELEDLRRETRRTLNRAKNTRNSI
FT                 DWRIHREAQRLYKNRINAVRIKGWRDYCEDIERYPDAARLLRILAKNPEVW
FT                 LEAIRLPTGEYATSEEECLKLLLEANFPGFRLSHEMGDESSGRNRQQRAAW
FT                 DLAAKVVTPEKVKWAIRNFQPFKAPGIDGIYPAFLQEGLEELVGPLVKLFR
FT                 ASVALAHVPEIWKTAKVVFIPKTGKPSHTTVKDYRPISLNSFVFKTLERLV
FT                 DRFIQDDILTVFPLHPNQHAYRAGFSTETALHSAVWRIEEQLERGEVMVGV
FT                 FLDIEGAFNCTSIEAVVKEAGLHGMPGPLIKWLQGMLTRRTVISSLGTVTV
FT                 SGEVSKGCAQGGVVSPTIWCLVANGPLEALNGWGCYAQAYADDFLILIKGS
FT                 EIGAAMDAMQLALRKVERWCCSTGLSVNPDKVEMVIFSRKYKLDAYRAPKL
FT                 SGVALQVKDSAKYLGIVLDKKSTWEKHLTAQCDKFLVALWTCRRAFGSTWG
FT                 LSPRIILWLYRAVLVPRLAYAALVWWPRAELAGARAAPEKLRGQVLRGATG
FT                 AYRTTPTKALGILVKVEPLHLTIIGMAAKAAHRLNAYGQWTQGTRHTRLPG
FT                 GVGLLPEFSIKTDMMIPRYFFGRRYGVVIPTREEWKARRDSLPGTGDVWYT
FT                 DGSRAETGTGSGYYCRRDGRGTFFSLGRYATVFQTEIYAILTCAQRNIELG
FT                 ARDRIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLWV
FT                 PGHTGIRGNEIADRLAALGAKHPPIGPEPYTGAARCLLAGEIRDWVEREHT
FT                 KEWQGTQGCRQAKAVMGQDTNVGWTKCIAGGSRNNSRLLTQIVTGHIRLRY
FT                 HGLKMGKEATGVCRWCEGAEETPTHVLTVCPKFAQLRHQCLGELFPTYEEI
FT                 RALDAGAILTFWRRAGLPA*"
XX
SQ   Sequence 3705 BP; 957 A; 870 C; 1122 G; 754 T; 2 other;
     acacagataa acttgcatca tagcaaaggc gcctcggccg cactggtcag gcgcatggct        60
     aagatgcaca caggcatatg cctaatacaa gaaccttggc tagtcgcggg gagatcaggg       120
     gtctgggggg agctggccgg atctttagag accccacgtg cagcgttccc agggcgtgca       180
     tacttgttaa aggttttgat gccctgctgc tgccggctcg gtgcagcagg gaccttacgg       240
     caataaagat cagacttcct gtgggagagg gctctgagag ggaggtggtg gtggcctctg       300
     gctacttccc atacgactct caggaagagc ccccaccaag ggaggtacaa gatcttgtcg       360
     aatactgcag acaacgaagc atccctctta tactgggatg cgacgctaat gctcaccaca       420
     tagtctgggg cagttcggat actaacggca ggggcgacgc actgctgcag tatctggtaa       480
     cgacgagtct gtgtattatg aacaggggca gagaacctac cttctacaat tcggttagaa       540
     gcgaggtgat cgacctaacc ctgtgtacag ttggaatgga ggggtgggtg ggcagctggc       600
     gggtatctaa cgaaccttca ctgtccgacc acagatacat ccaattcgaa tggaaggaac       660
     gatgctcgga aacaagggcc tttagaaatc ccaggaaaac tgactgggcg ttctttaggg       720
     aaaaccttag raacgagctt caatccttca aaccaagctt tggaacaacg gatgagcttg       780
     atcactgggc atttgagcta ggtgagatag tgaacatctc tttccagaga agctgtccct       840
     ggaccatccc aaggggaaca tggggtaccc catggtggaa ccgggagcta gaggatctgc       900
     gacgwgaaac gaggaggacc cttaacaggg ccaagaatac tcgcaatagt atcgattggc       960
     ggattcacag agaagcccag aggctatata aaaaccgcat caacgcggtg agaatcaaag      1020
     gatggaggga ctactgcgag gatatcgaga gatatcctga cgcggccaga ctcctccgga      1080
     tactcgcgaa aaatcctgag gtatggcttg aagcaatcag actgcctaca ggagaatacg      1140
     caacctcgga agaggagtgt ttaaaactac ttctggaagc caactttccg ggctttcggc      1200
     tctcccatga gatgggggat gagagctcgg gtaggaatag gcagcagagg gcggcatggg      1260
     atctggcggc gaaggtcgtc acaccggaaa aggtcaagtg ggccataagg aactttcaac      1320
     ccttcaaggc gccgggcatc gacggaatct acccggcatt ccttcaagag gggctggagg      1380
     aactggttgg ccccttggta aagctcttca gagcaagtgt agctttggct catgtacctg      1440
     aaatatggaa aacggccaag gttgtgttta ttcctaagac agggaagcca agtcacacca      1500
     ccgtcaagga ttacagacct ataagtctta actcctttgt gtttaagaca ctagaaagat      1560
     tggtggatag atttattcaa gacgatatcc taaccgtgtt tcctcttcac cctaaccagc      1620
     atgcgtacag ggcgggattc tctacagaga ctgccttaca ctcggcggtt tggcgcattg      1680
     aggagcagct ggaaaggggg gaggtaatgg tgggagtatt tctagacata gagggagcgt      1740
     ttaactgcac ctctattgaa gcagttgtca aagaggcagg actgcatggg atgcccggac      1800
     cattaataaa atggcttcag ggcatgctta cccgcaggac tgtgatctcg agtctcggaa      1860
     ccgtaacggt ctccggcgag gtcagtaagg gatgcgcgca gggcggagtg gtgtcgccca      1920
     ccatttggtg cctggtggca aatgggccgc tggaagcgct gaatgggtgg ggctgctatg      1980
     ctcaagccta tgcggacgat ttcctgatac tgataaaagg aagcgaaatt ggcgcagcca      2040
     tggacgccat gcagcttgca ttaaggaaag tggagagatg gtgctgctcg acgggacttt      2100
     cggttaaccc ggataaagtc gagatggtga tcttctcccg caagtacaag ttagatgcct      2160
     acagagcgcc caaactctct ggagtcgccc tacaggtaaa ggactcagct aagtacctcg      2220
     gcattgttct ggataaaaag tcgacctggg agaagcatct cacggcccag tgcgataaat      2280
     tcctggtggc tctctggaca tgtcgtaggg catttggcag tacatgggga ctaagtcccc      2340
     ggattatact gtggctatac agggctgttc tggtacctcg tctggcctac gccgcgttgg      2400
     tctggtggcc aagggcggag ctggcgggtg ctagggcagc accggagaaa ctcaggggac      2460
     aggtgctgag gggggcgaca ggggcctata ggaccacgcc taccaaggca cttggaatcc      2520
     ttgtgaaggt ggaaccactc catcttacta tcattgggat ggctgctaag gcagcgcaca      2580
     gactcaatgc gtacggacaa tggacacaag gcacgaggca cacccggctc ccgggtgggg      2640
     tgggtctctt gccggaattt tccattaaaa ctgatatgat gatcccgcgc tacttctttg      2700
     gaagaagata cggggtcgtc ataccgacaa gagaagaatg gaaggcccgc agggacagtc      2760
     taccaggaac gggggacgtc tggtacacag atggctctag ggcagagact ggcactggtt      2820
     cggggtacta ctgccgaagg gatggaaggg gaaccttctt ttccctgggg cggtatgcta      2880
     cggtcttcca gaccgagata tacgctatac tgacctgcgc tcagaggaac attgaactcg      2940
     gcgcaaggga tagaattatc accatttgtt cagacagtca ggcggcactt agagcactta      3000
     tggctcatag gacgacctcc agactggtct gggaatgcaa agtggttgta aatcagctga      3060
     ccgctcacaa caacaaggtc aggctgcttt gggtcccagg gcacaccggg atcaggggta      3120
     acgaaatagc agatagactt gcagctttgg gagctaaaca ccccccaatc gggccggagc      3180
     cctacacagg tgccgcaagg tgcctgctag cgggcgaaat ccgggactgg gttgagaggg      3240
     agcatactaa ggaatggcaa ggaactcaag gatgcagaca agccaaagcg gtaatgggac      3300
     aggacaccaa tgtcggctgg accaagtgca tcgcaggagg cagcagaaat aactcccgac      3360
     tcctgacaca gatagtgacc gggcacatcc gcttaaggta ccacggtctg aagatgggga      3420
     aggaggctac gggtgtatgc aggtggtgcg agggggcgga agaaacgcca acccatgtgc      3480
     tgactgtttg cccaaaattt gcgcagctca gacatcagtg cttgggggag cttttcccca      3540
     cgtacgaaga gattagggca ctcgacgcgg gagccatact gaccttctgg agaagggcag      3600
     gcttacctgc gtaggggatg tcatgacgaa gggtggtaca atgggtttac agcctaagtg      3660
     ccagggatct cggaggtccc cccttcatag taataataat aataa                      3705
//
ID   Baggins-3_NVi repbase;    DNA;    INV; 4961 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   23-JUL-2010 (Rel. 15.08, Last updated, Version 2)
XX
DE   Non-ltr retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   Baggins-3_NVi.
XX
NM   Baggins-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4961
RA   Bao W. and Jurka J.;
RT   "LINE retrotransposons from the parasitic wasp Nasonia
RT   vitripennis.";
RL   Repbase Reports 9(7), 1414-1414 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(623..985,910..1230,1220..1540,1555..2406,
FT                 2256..3458,3340..4863)
FT                 /product="Baggins-3_NVi_1p"
FT                 /translation="MNSESITNRKEEKMAPQEXGDPAKGMLPQRPLIPPSQ
FT                 TQGGVVDAPSDIAAEGVVTPPALEPAKKQRKRDCGALRKRKAREHARAAAS
FT                 STEPTTSDTLVTGQKRRQGTNKPRPLFPVTTRKHSGYGPEEATRDEQTPPS
FT                 VPRNNKKVKGPSEGANPNVGGSKQMRAQAGGGVLTDAQRANPLTIVLVLED
FT                 YPDSPITPELFQEFRGAVRKELDLQPQNSTPPSVRRGRGGGVNPRSQQSRG
FT                 EGVDGQQACHSGLTLGRQAQNWGGGAELLQQRIKVVARFPGPAERPATILE
FT                 KLEGYNPSLKTKAWRVVESKVGEEREAGAGDRQLLVLTIPRGXRAPSSLPI
FT                 SQINLHHCKDASDILLRNMTVAHTCIALIQEPWVVKGAIRGLGNLVCFRNP
FT                 KEQRPRACIVAKGINALPLLNLTTGDLMAVQTELEDVERIVIASAYLPFDN
FT                 TDNFPKAVQMPGVSNCSTTVGDTPTFRNAIREEVIDLTLSSTKIAHLISEW
FT                 RVSDEPSLSDHSLITYLVGNPSEEQPKWVRNPRKTNWEGYKKDVEEAMREI
FT                 PLDIQDSTSRRDIYRKSAKEANRRTAGETSARKSKREKRQPGCTRSWRGIP
FT                 RLSWARLSSRMNITPLQRRRRSXNSWRNFCEKIQKGKETARMYKILARNPE
FT                 AVLGTLKLPNEHYATTKEETLNLLVQTHFPSFVGAGTGDLSGGGSGQGRRP
FT                 TYAELSENRLLAGRIVTPERVMWAIRSFEPFKSPGPDSIFPALLQKAEDVI
FT                 IGPLTRMARTSITLGLVPTGWQGTKVVFIPKPGRNGYTSPKDFRPISLTSF
FT                 VLKTVERMVDRYIREKVLGDKGLHKEQHAYRAGRSTETALFRAVSTINKQL
FT                 EAKGYAIGALLDIEGAFNHTSREVIKRAMNRLVIPSTIAGWIDHMLGNRNL
FT                 EASKGSTTLKGTVGSGCPQGGVLSPLIWCLVVDELLTELNNTGCTAIGYAD
FT                 DILIIARGPFLDLLMGVMQGTLTLVNKWCNKAGLSVNXXXDAGLHQKIQME
FT                 KGMQLDPWGAETASTSGATRPGYLSIXXKMLVCTRRYKWKRECNLTLGGQK
FT                 LPLKSQVKYLGVILDSKLSWKKHLEYVIGKVTANLWQIRRVIGRNWGLSPE
FT                 ALRWMYEAVLKPRLTYGSAVWWTRTALSTSNILLEQLRSQIVRSISGAIRS
FT                 TPTAALGMLLDVEPLRVTLAAAAAQALHRITNSLGEGNMQELPQLPKGLDE
FT                 KGTLRMNPDAMNKAFLFDKKYRVSIPSRGEWDDERINIPNDGDLWYTDGSK
FT                 RKDAAGAGVYQRQSGKGTILPLGRHATVLQAELTAIMWAAQAALAESTRPR
FT                 IYICSDSKSALQALNNFTTKSRLVWDCFQTLNRLALKARVTLLWVPGHYGV
FT                 KGNMIADDLAKLGAKSSLIGPEPAVGLCQSLIKGEIRQWAENETNQIWSQI
FT                 ATCGKTKAFVTTGNAKNWSRVILGLKRAKTKLLVEILTGHGSLNAHRHAMG
FT                 LSRDLFCRFCCTEEDTPEHLLCNCPAIAEKRWRHLGAPLLETEEVQAKHAP
FT                 GIFSFWETIGA*"
XX
SQ   Sequence 4961 BP; 1336 A; 1268 C; 1440 G; 911 T; 6 other;
     ggtattgttc actattatct acggtcggct ccctccaccg gggtcgccac cttgtcgagt        60
     gcccgctttt tagggcctgg tgtgggggct cgtccggcga gtcgtcgcgg ttgtctcgac       120
     tccggtgtcg ggagcgcgac gccccgaact cgggtcggtg gggtgacggg ggaccgagac       180
     caatcggcca accttctccc cggcgcgtaa ctgaggtgcg tcctggcgtg gcggcgaaat       240
     tgggctgatg cgggattccg cctctcgggc tcaagagtag cctccccggc aggatccccg       300
     taaaaagggc actgctgtcg ggcctctccc ctgaccgggg tcggacctcg gggttccccg       360
     agggcgacct gtggactggc cggaggctaa gggcagcccc ccattgcgtt cgggaggagg       420
     cgcaatgggt attttatcca acccctaatc ccaaggtgtg agccatcgtg ctgaggggac       480
     tagttgaccg ctggggtact agtcggtcac aaacgatgcc tcggagaaac cgggcgaaat       540
     ctccgagtat ctagccttac cgtcgcatgc ggggctctgt gacggcggac cgtttatttc       600
     cctagctact cgtgggatca aaatgaattc tgaatcaatt acaaatagaa aggaggagaa       660
     gatggctcct caggaggycg gcgaccctgc aaagggaatg ctgccccaga ggccgttgat       720
     accaccttcg cagacccagg gaggggtggt ggacgcacct tcggacattg cggccgaagg       780
     ggttgtgacc ccacctgccc tggaacctgc taaaaagcag agaaagagag actgcggcgc       840
     tttaaggaag aggaaggccc gcgagcatgc tcgcgcggct gcttcatcca ctgagcccac       900
     gacctctgac actctggtta cgggccagaa gaggcgacaa gggacgaaca aaccccgccc       960
     tctgttcccc gtaacaacaa gaaagtaaaa ggaccgtccg agggagcaaa ccccaacgtc      1020
     ggtgggtcta agcaaatgag ggcgcaagct ggagggggcg ttctcacgga cgcccaaaga      1080
     gcgaacccgc tcactatcgt gttggtgctg gaggactacc ccgatagtcc gatcaccccg      1140
     gagttgttcc aagagttccg gggtgcggtc aggaaggagt tggacctcca gccacaaaat      1200
     tcgacgcctc cttctgtaag gagggggcgt taatcctcgt agccagcaat ccagaggcga      1260
     aggagtggat ggccaacaag cttgccactc tggacttacc ctggggcgcc aggctcaaaa      1320
     ttgggggggg ggggcagagc tactccaaca aaggatcaag gtcgtcgcca ggtttcctgg      1380
     tccggcagag aggccggcga cgattctgga gaagttggag ggctataacc cctccctaaa      1440
     gacgaaagcg tggagggtcg tcgaatccaa ggtcggggag gagagggagg ccggcgcggg      1500
     agacagacag ctcctggtgc tgaccatccc ccgagggaak tgatggaaac ataaagggct      1560
     ccatcatccc tccctatctc tcagattaac ttgcatcact gtaaagacgc ctcagatatc      1620
     ctacttagga atatgacagt ggcgcacaca tgcatagcac tcatccagga accttgggta      1680
     gtgaagggtg ccataagggg gctaggtaat ttagtctgtt tcaggaaccc gaaggagcaa      1740
     agaccaaggg cctgcatagt agccaagggc atcaacgcgc tgccactgct gaaccttacc      1800
     acaggggacc tcatggcagt tcaaacagag ttggaggacg tagaacggat cgtcatagct      1860
     tccgcctacc taccgttcga taatacagac aactttccaa aggcggttca aatgccaggg      1920
     gtgtcaaact gctcgactac cgttggtgac acgcctacgt tcaggaacgc aatcagggag      1980
     gaggtgatag acctaactct gtcgtccacc aagatagcgc atctgatcag cgaatggcga      2040
     gtgagtgacg aaccatcgtt atcggaccac tctctgatca catacttggt cggtaaccct      2100
     agcgaggaac aacccaaatg ggtaaggaac cccaggaaaa cgaactggga aggatataag      2160
     aaggacgtgg aagaagctat gcgcgaaata ccactcgaca tccaggatag cacatcacgg      2220
     agagatatat accggaaaag cgccaaagaa gctaatcgtm gaacagctgg agaaacttct      2280
     gcgagaaaat ccaaaaggga aaagagacag ccaggatgta caagatcctg gcgaggaatc      2340
     ccgaggctgt cctgggcacg cttaagctcc cgaatgaaca ttacgccact acaaaggagg      2400
     agacgctaaa tctcctcgta caaacgcatt ttcccagctt cgtgggggcg gggacgggcg      2460
     acctgtcggg cgggggatct ggtcagggcc gcagaccgac gtacgccgag ttgagcgaaa      2520
     atcgactgct ggccggacgg atcgtcacgc ctgagagggt gatgtgggct ataagatctt      2580
     tcgagccatt taagtcaccg ggacctgata gtatttttcc ggccctgctt caaaaagcgg      2640
     aggacgttat cattggccca ctgacacgaa tggcgagaac aagcatcacg ctcggcttgg      2700
     tccccacggg gtggcaggga accaaggtag tattcatccc gaaaccaggg agaaatggat      2760
     acacatcccc gaaagacttt cggccaatca gcctgacctc ctttgtactt aagaccgttg      2820
     aacgaatggt cgatagatac attcgagaga aggttttggg cgacaagggg ctacacaaag      2880
     agcaacacgc ctacagagca gggagatcca cggagacagc actctttagg gcagtatcca      2940
     cgatcaataa acagctggag gccaaaggat atgccatagg cgcactattg gatatcgaag      3000
     gggcattcaa ccacacatcg cgagaggtga tcaaaagggc catgaacagg ctcgtgatcc      3060
     cctctacaat agcgggatgg attgaccaca tgttgggaaa tcgcaattta gaagcgagca      3120
     agggcagcac gacacttaaa ggtacggtgg ggtctggatg ccctcaaggc ggcgtccttt      3180
     caccactaat atggtgcctg gtggtggatg agctgctgac cgaattgaac aacacaggct      3240
     gcacggcaat aggatacgca gacgacatcc taatcattgc acgcggccct ttccttgacc      3300
     tcctgatggg agtcatgcaa ggtaccctaa cgttagtaaa caagtggtgc aacaaggccg      3360
     ggttatctgt caatcyagsc waagatgctg gtctgcacca gaagatacaa atggaaaagg      3420
     gaatgcaact tgacccttgg ggggcagaaa ctgcctctta agagtcaagt caaataccta      3480
     ggagtcatcc tagacagtaa gctgtcctgg aagaaacacc tggaatatgt gataggcaag      3540
     gtcacggcca acctgtggca aattagaagg gtcataggga gaaactgggg cctgtcacca      3600
     gaagccttga gatggatgta tgaggctgta ctcaaaccca gactgacgta cggttcggca      3660
     gtgtggtgga cgagaacggc cctctccacc tcaaacatcc tcctcgaaca actaaggagc      3720
     caaattgtga ggagcatctc aggtgctatc agatcaacac caacagcggc actgggaatg      3780
     ctgcttgatg tagaaccact aagggtgaca ctggctgcag cggctgcgca agccctgcac      3840
     aggatcacca actcgcttgg ggaaggcaat atgcaggagc taccacagct cccaaaagga      3900
     ttggacgaaa agggaactct gcggatgaac ccggacgcca tgaacaaagc cttcctgttt      3960
     gacaagaaat atagagtaag catcccatcc agaggagaat gggatgacga aagaataaac      4020
     atcccgaatg atggagacct gtggtataca gatggatcca aaaggaagga tgctgcagga      4080
     gcgggggtgt accaacgaca gagcggcaaa ggaacaatct tgccgctagg tcgacacgcc      4140
     accgtactac aagcggagct gacagcgatc atgtgggcgg cgcaagcggc actagctgag      4200
     agcacgcgcc cgcggatcta tatctgctcc gacagcaaaa gtgctctcca agcactaaac      4260
     aactttacca ccaaatctag gctggtatgg gactgttttc agaccctaaa cagactagca      4320
     ctcaaggcca gggtcacact actatgggtc ccggggcact acggtgtcaa gggaaacatg      4380
     atagcagatg acctggcaaa gttaggcgca aagagcagcc taatagggcc agagccggct      4440
     gtcggactct gccaaagtct gatcaagggg gagatcaggc aatgggcgga gaatgagaca      4500
     aaccaaatct ggagtcaaat cgccacgtgt ggcaaaacca aagcctttgt gacgactggc      4560
     aatgcgaaaa actggtccag agtaatcctt ggacttaaaa gagcaaaaac caagctgctt      4620
     gtggagatcc ttacaggaca cggcagcctg aatgctcata gacatgcaat gggactaagt      4680
     agggacctat tctgtagatt ctgctgcacg gaggaggaca cccccgagca ccttctgtgt      4740
     aactgccccg ctatagcgga aaagaggtgg cgccacctag gtgcccctct cttagaaacg      4800
     gaagaggttc aggccaagca cgcccccgga attttttcat tctgggagac gattggcgct      4860
     tgaaatagcg actgaactaa tcttgaggga cgccaaggga ttacccatgc gtccagtggt      4920
     ctgaataagc ccgactcgta tacaataata ataataataa t                          4961
//
ID   BAGGINS1    repbase;    DNA;    INV; 5453 BP.
XX
AC   .
XX
DT   26-JUL-2000 (Rel. 5.06, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   BAGGINS1 is a non_LTR retrotransposon - a consensus sequence.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   LOA superfamily; BAGGINS1.
XX
NM   BAGGINS1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5453
RA   Kapitonov V.V. and Jurka J.;
RT   "BAGGINS1.";
RL   Direct Submission to Repbase Update (30-APR-2000).
XX
DR   [1] (Consensus)
XX
CC   BAGGINS1 belongs to the LOA clade of non-LTR retrotransposons.
CC   It has two ORFs. ORF1 encodes a protein of unknown function
CC   similar
CC   to a protein encoded by LOA.
CC   ORF2 encodes the reverse transcriptase and RNaseH domains.
CC   ORF2 includes the Ribonuclease H domain:
CC   GKDIAILSDSQAAIKALSKAKITSKLVNEVRTALDKLGAVNKLTIRWVPGHNNIPGNELADNLARKG
CC   There are ~100 copies of BAGGINS1 fixed in the genome; they are
CC   ~95% identical to the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           398..1768
FT                 /product="BAGGINS1_1p"
FT                 /translation="MNNRPKNIKIPQALTAGNVARQFEDRLLDGERPTSVV
FT                 TPKNAPNRSVPTAQARPVAGGKNRAATPSHSTVVQAGQAGRAKNPLPQLGQ
FT                 PGARDDPNRKGLSGARTKWYLRYLQQGKSPAEALSLAKTPQPLEQRPNSAS
FT                 KRANSTLTPPTETPKRQKVEKSRPLTAPFDGPSTSRAAKATEVRKPSYAAV
FT                 TGAIKVAVVPEGYPKVVLSSENLSQLEDALLEEIVLSGWDSPIKFGGIHFR
FT                 VGHLIVDCRNATTAEWLQLAVPSLSKWSGVSLEVKMGDDLPSSHNITIFCP
FT                 RTGDKTTKWIMELIKKQNDLDTENWRLISRKNEGGGSLLSLGIDDNSCAKI
FT                 ISSDHKLSFRFGDISVCGLKKAKAIKAGTRRVETPRNPPVSAEKEKPNKLS
FT                 ESSEDLADDEDLDATVIEMGDQTPISSQELGMELDLLSKEEAVPADGDLGI
FT                 SRSATPTMEPII"
FT   CDS           1771..5382
FT                 /product="BAGGINS1_2p"
FT                 /translation="MVGSTGIAQVNIHRAKAASAVLARMFTKQHLGLALVQ
FT                 EPWYNQGIKGLYVKNAKVIWDQRASSPRACILACRSINYYILTEFLTRDCV
FT                 PIVVEDVGAAKKTVVASAYFAGDEACPPPEITALAEHCKRMHSPIIIGCDA
FT                 NAHHVIWGSSDVNQRGESLLEFILNNNLEILNVGNVPTFVTRVRSEVLDIT
FT                 LSSRSVASHISDWHVSPEESMSDHRIIRFNIGLNLECSERKRNPRNTNWEG
FT                 FNASLLRDPVTRVTGKLRTTLELEAAVEDINSCLTNAFRENCSLGRAKRDK
FT                 DAPWWNDQLEKLRKATRRLFNKAKREGNWDAYRNKLTMYNHEIRKAKRRNY
FT                 RTFCEAIVNTCEGARLHRAISKGVPESNQALRKEDNSYTIGSKEKLELLLA
FT                 THFPGSTLQTDGNTPVTAQSRPRATDWAKAKSIVTTERLRWAIGTFQPYKS
FT                 PGPDGIQPILLQRALSQLAVPIRKILISSLALGHIPTAWSIAKVVFIPKAG
FT                 KKDITDPKSFRPISLTSFLLKTLEKLVDVSIRSTLLVEHPLQRTQHAYRAG
FT                 RSTDTALYHLKSLIEDSLTHKEVALCAFLDIQGAFDNTSHEAVNASLARRG
FT                 LDATTSRWIKSLLASRRAMATIGGQSSTVSTTRGCPQGGVLSPLLWSLLVD
FT                 ELLDRLTRRGILCQGYADDIVIIARGKYEETLCDIIQLGLNMTSEWCKEVG
FT                 LSLNPSKTVIVPFTNRYKLQRMKAITLSECRIEVSKEVKYLGITLDSKLSF
FT                 KTHVDNTIDKCTRALFTCRNIAGKSWGTSPRIIRWLYLMVVRPILTYGAIA
FT                 WGDRARLSTTKVKLHKLQRMACVCMTGAMRTCPTAALEVLMEVTPLHIVIE
FT                 MKRKATLIRIEGAGNDCNLTSKDAESLKRDIPLLMQPRDEMPAEHRFAQNF
FT                 STHLSNKNSWTSLGKVHPTKPQTIKWYTDGSLTDEGSGLGVVGPRLKYHES
FT                 MGRYTSIFQAEVCAIGRCAEFNLQRNYRGKDIAILSDSQAAIKALSKAKIT
FT                 SKLVNEVRTALDKLGAVNKLTIRWVPGHNNIPGNELADNLARKGAENPLIG
FT                 PEPFCGVGHHRVLGLLKSIEEEKRLSFWEHLPGLRQSKILLREYNHKRFKT
FT                 LMTHGKNTVRILTGLLTGHCRLHSHLHKIGIADSELCRFCCMEEESSAHII
FT                 CDCMALSIRRNRLLGMYVVPRETIAALNPNKILAFIQCIGLQGDL"
XX
SQ   Sequence 5453 BP; 1576 A; 1325 C; 1418 G; 1134 T; 0 other;
     ggccgccacg ccagtaggta tcacaagggg atcaacgcgc caccaacggt ggtacgcgcc        60
     gtaattgtga cacactactg gaagtgcaac tacactctcc acgcgagggc ggctggaaac       120
     aggctcttag ttaggtcatg tctctgctaa gagtgctggc taatcgtagt tgggctggag       180
     ctggtaactc tcaaaaattt ccacatctcc gggccggact aaggtgtcat tcgacccgtg       240
     ccgagagtct gccaggctgg gggcccggga aacaactagc ccagtcgcta acggagagtc       300
     cgggcaagtg gcgtccgccc ggtctggtta gccttacccg ggtactgcgg atctctgccc       360
     gggtggaccg tttatttctc tgcaactcgt gggaaccatg aacaatagac ccaaaaatat       420
     taaaataccg caggccttga ctgcgggaaa tgtcgcaaga cagtttgagg accgtctcct       480
     tgacggagag cggcctactt cggtggtaac accaaaaaat gctcctaatc ggagtgtgcc       540
     aacggcacaa gcacgcccag ttgcgggagg gaagaatcgg gcagccacac cgagtcactc       600
     gactgtggtc caagccggcc aagcgggacg ggctaaaaac ccattaccgc aacttggtca       660
     gcctggggcc cgggatgacc ctaaccgtaa ggggctgagc ggggccagaa cgaagtggta       720
     tcttcgttac cttcagcagg gcaagtcacc cgcagaagct ttgtctctgg ccaagacacc       780
     gcagccgcta gagcaaaggc ccaactctgc ttcgaagcgg gcaaactcca ccctgacgcc       840
     tccgacggaa acgcctaaga ggcagaaggt ggagaagagc aggccactga ctgctccttt       900
     cgatggccca agtacctcaa gggctgcaaa ggcaactgag gtacgcaagc catcatatgc       960
     ggccgtaact ggggccatta aagttgcggt cgtaccagag gggtacccca aagtcgtcct      1020
     cagcagtgag aacctctcac agctcgagga cgcactactg gaagagatag tcctctccgg      1080
     ttgggattct ccaattaagt ttggaggaat ccacttcagg gtgggtcacc tgatagtgga      1140
     ttgccgcaac gcaaccactg ctgagtggct gcaattagca gtccccagcc tcagtaagtg      1200
     gagcggtgtc tccctggagg taaagatggg cgacgacttg ccatcgtcac acaacatcac      1260
     catcttctgc cccaggacag gagacaagac aacaaagtgg atcatggaat tgatcaaaaa      1320
     acaaaatgac ttggacactg agaactggcg tcttatatca aggaagaatg agggtggtgg      1380
     ctcgctcctc agccttggca ttgatgacaa ctcatgtgcc aagattattt ctagcgacca      1440
     caagctgagc ttcaggtttg gagacatctc agtttgtggt ctaaagaagg ccaaggcgat      1500
     caaagccggc acaagacggg tcgagactcc tcgaaatcca ccagtctccg cggagaagga      1560
     gaagcccaat aagctctccg aatccagcga ggatctggcg gatgatgagg atctcgatgc      1620
     gaccgtcatc gagatggggg atcagacccc gatatcctct caggagctag gcatggaact      1680
     agacctgctg agtaaggaag aagcggtacc ggcggatggt gatctgggca tctccagatc      1740
     agcaacgccg acgatggagc cgatcatcta atggtcggga gtacagggat agctcaggtg      1800
     aacatccatc gcgccaaggc ggcctcggcc gtgctggcaa ggatgttcac caagcaacat      1860
     cttgggctag ccctggtaca ggaaccctgg tataaccagg gaataaaagg actgtacgtg      1920
     aagaacgcca aggtaatttg ggatcaacgg gcttctagcc ctagagcctg tatcctggca      1980
     tgtagaagta ttaattatta tatacttaca gaatttctca cgcgggactg tgtaccgatc      2040
     gtggtagaag atgtgggagc agccaagaag actgtggtgg catcggcata ctttgccggt      2100
     gacgaggcgt gcccaccgcc cgaaatcact gcactggctg aacactgtaa gaggatgcac      2160
     tcacccatca tcattggatg tgatgcaaat gcacatcacg tgatatgggg cagcagcgac      2220
     gtgaaccaaa gaggtgagtc actcttagaa tttatcttga ataacaatct agaaatccta      2280
     aatgtcggca atgttccgac atttgttact agggtaagat ctgaggttct ggacattaca      2340
     ctttccagca gatcagtggc ttcgcatata agcgactggc acgtatctcc tgaggagtca      2400
     atgtcagatc acagaattat tcgttttaac atagggctaa atctagaatg tagcgagcgt      2460
     aagcgcaatc ccaggaatac gaactgggaa gggttcaatg cctccttact gcgagatcca      2520
     gttactaggg taaccgggaa actccgtacc actctagaac tggaggccgc cgtagaagat      2580
     attaactcgt gtcttactaa cgcgttcaga gaaaactgct cccttggccg agccaagagg      2640
     gataaagatg ctccatggtg gaacgaccaa ttggagaagt tacggaaagc gaccaggcgt      2700
     ctctttaaca aagcaaaaag agaagggaac tgggatgcct accggaataa actgaccatg      2760
     tataaccatg agatcaggaa agccaaacga aggaattata gaaccttctg tgaggcaata      2820
     gtaaacacat gtgaaggcgc tagacttcac agagcaatct ccaaaggagt gccagaatca      2880
     aatcaggcac tacgaaagga ggataactcc tatactatag gaagtaagga gaaacttgag      2940
     ctactactgg caactcactt tccgggaagc acgcttcaaa cggatgggaa taccccggta      3000
     acggcacaaa gtagaccgcg tgctactgat tgggccaaag caaaatcaat agtaacaacg      3060
     gagagattaa gatgggcaat tggtacattc cagccctaca aatctcctgg tccagatggc      3120
     attcagccaa tcctgcttca acgagcgcta agtcagctcg cagtaccgat caggaaaata      3180
     ctgatcagca gcctagcttt aggacacata cctactgcct ggagtatagc aaaagtggtc      3240
     ttcattccga aagctggaaa gaaagacatc actgatccga agtcgttcag acccatcagc      3300
     ttgacatcgt ttttgctaaa aacgttggaa aagctagtgg atgtcagcat tagaagcact      3360
     ctgcttgtgg agcatccgct ccaacggacg cagcatgcct acagggcggg cagatcaact      3420
     gatactgccc tatatcacct gaaaagcctt attgaggatt cactgactca taaggaagtg      3480
     gcgttatgtg ccttcttaga catacagggt gctttcgaca atacctccca tgaggctgtc      3540
     aacgcatccc tggcaagaag aggactagat gcgacaacca gcagatggat caaatcacta      3600
     ctggcatcta ggcgagccat ggccactata ggaggacagt cgtccacagt atctaccaca      3660
     aggggttgcc cccaaggggg tgtcctctcg cctctcctgt ggagcttgct ggtagacgag      3720
     ttgctggaca gactgacccg caggggtata ctttgccaag gctatgctga cgatattgtc      3780
     attatagcta gaggtaaata tgaggaaaca ctctgcgata tcattcaact gggcctcaat      3840
     atgaccagcg aatggtgcaa ggaagtaggc ctgagcctaa atcctagcaa aactgttatt      3900
     gttcctttca caaataggta caagctacag agaatgaagg caataaccct gtcagaatgt      3960
     cgcatagagg tcagcaaaga agttaagtat cttgggataa cccttgactc caaacttagc      4020
     ttcaaaactc atgtcgataa cacaattgat aagtgcacca gagcactttt cacgtgtaga      4080
     aacattgctg gtaagtcgtg gggaacctca ccacgcataa taagatggct gtacctcatg      4140
     gtagtcagac ccatactaac ctatggggca atagcctggg gtgatagagc acgccttagc      4200
     accactaagg tgaaactcca taagctgcag agaatggcct gcgtatgcat gacaggagca      4260
     atgcgtacct gtcccactgc agccctagaa gtactaatgg aggtgacgcc gcttcatatc      4320
     gtcattgaaa tgaaacggaa agccacccta ataagaattg agggagcagg aaatgactgc      4380
     aacctcacaa gtaaggatgc tgaaagccta aaaagggata tccctttgct aatgcaacca      4440
     agggatgaga tgccagctga gcataggttc gctcagaact tcagcactca tctcagtaat      4500
     aaaaacagtt ggacatccct ggggaaagta caccctacga aaccacaaac aataaagtgg      4560
     tatacagacg gatccctcac cgacgaggga agtgggctgg gggttgtagg ccccaggttg      4620
     aaataccacg aatcaatggg cagatacacc agcatttttc aagctgaagt ctgtgctatt      4680
     ggacgctgtg cggagtttaa tctgcaaagg aactatcgtg gcaaggacat tgctatactg      4740
     tctgatagtc aagcagccat aaaggcgctc agcaaagcta agataacatc taagctagta      4800
     aatgaagtga ggacagccct agacaaacta ggagctgtca acaaactcac aataaggtgg      4860
     gtcccgggac acaacaacat cccgggaaat gagctagcgg acaacctagc caggaaaggg      4920
     gcagagaacc ctctaattgg gcccgaaccc ttctgtggtg ttggtcacca cagagtactg      4980
     ggcttactta agtcaataga ggaagaaaaa cgtctgtcct tctgggaaca cctaccagga      5040
     cttaggcagt ctaagattct cctccgtgaa tataaccata aaaggttcaa gaccttaatg      5100
     acacacggga aaaacaccgt gcgcattttg actggccttc ttacggggca ttgccgactt      5160
     cacagccatt tgcacaagat tggcattgca gacagtgaac tctgtcgctt ctgctgcatg      5220
     gaggaggaga gctctgcaca tattatatgt gactgcatgg cgctttccat caggaggaac      5280
     agactcctgg gcatgtatgt agtcccacgg gaaacaattg cagccctgaa ccccaataaa      5340
     attctggcat ttatacagtg cattggactt cagggggatc tttgagtcat gaaggggtag      5400
     tacaatagat ccgactgggt cgcagtacac atacaaaccc acttaataat aat             5453
//
ID   BARI1       repbase;    DNA;    INV; 1750 BP.
XX
AC   Y13853;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Drosophila erecta clone Er1 inactive Bari-1 family transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; BARI1; DEBARI1;
KW   pseudogene; Repeat region; transposase; transposon.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1750
RA   Caizzi R.;
RT   "BARI1.";
RL   Direct Submission to Genbank (14-JUN-1997)Caizzi R., Institute of
RL   Genetics, University of Bari, Via G. Amendola 165/A 70126 BARI
RL   ITALY.
XX
RN   [2]
RP   1-1750
RA   Moschetti R., Caggese C., Barsanti P. and Caizzi R.;
RT   "Intra- and interspecies variation among Bari-1 elements of the
RT   melanogaster species group.";
RL   Genetics 150(1), 239-250 (1998).
XX
DR   GenBank; Y13853; Positions       1    1750.
XX
SQ   Sequence 1750 BP; 601 A; 299 C; 335 G; 515 T; 0 other;
     aagcttaagt ctaagggact ggaggatatg tcactatata tacagaggtg gtcaaaagta        60
     tttacacaac gtgctttttt tttcaattgt caactttgat cgcttatgct gctgcttttg       120
     tactcagaaa cgaacttaac ggtatttgtc gtgcttctac atctatacag aagcagagca       180
     acgaaagaag tggaaaataa ctgttctagg gctaaaatag aagcattgaa ctgatgcttg       240
     tctgttgtca gaagtcattt acacacaatt tttacacgtc aaaattattt acacagtgca       300
     aattgaagtt agtctttgat ttgcattgtt atgtgaagtt ctagttgatt taatttgtaa       360
     aatggcaaaa acaaaggagc tatcagttga gcatcgagcc gagattgtca ctaaatttaa       420
     ggctggtact tctgcatcta aattagctaa gttgtacaaa atatcagcta aaactgtgta       480
     caatttagtt aaaaaaagga cacactggca aatttggaaa ataaaaagag tactggccga       540
     aaacttgcat tgaacccaag agactgcaga cacattagag gagttgtact aattaatccc       600
     accataagta ccgttaaaat tgctgcagct tcgaaaaatt taattggaaa acatattatt       660
     agcgatagta cacgttgcag aatgaaggaa gttgacatca acacctatgt tgttcgtgca       720
     gtagttgata ttaccccaag aaacaaggaa aaacgtctcg catttgcctt ggagtataag       780
     gagaagcctc tcgagttctg gtttgatgtt ttatggactg atgaagttgc gtttcagttt       840
     cagggatcat ttagcaagca atttatgcat ctcccaaaac aactaaaggg taatgccgtc       900
     cagccaatca atcggtttgg tggtggcacg gttatgttca ggggctgttt aagctactat       960
     ggatttggag acatggtacc gatagagggt acactaaatc aaacaggata cctccatatc      1020
     ttaaatgagc acgcattaac ctcaggaaat agactgttct ccacgaatga ctggatcttg      1080
     cagcaggaca atgttccatg ccacaagggc cgagtaccaa ccaagttctt gaaagacata      1140
     aatcaggccg cacaaagccc cgatctgaac attatcgaaa atgtctgggc ttatgttaag      1200
     agtcagaaga catttgaaag agatgcccag cgcgatgaaa ctatagccta aattacagaa      1260
     atttggtcca aacttggtcc ggtcaatacc agcaaagctc caagcagtca ttgatgccaa      1320
     aggcggagta actagatatt agttggctta acataatacc atattaaaat aatataaaat      1380
     atttcgttta aattcaataa aaaacgcaaa atcaattaaa atagctgtgt gtaaataatt      1440
     ttgacgtgta aaaattgtgt gtaaatactt ctgacaacag acaagcatca gttcaatgct      1500
     tctattttta gcccatgaac agttattttt tccacttctt ctttcttttg cttctgtata      1560
     gatgtagaag cacgacaaat accgttatgt tcgtttctga gtacaaaagc ggcagcaata      1620
     agcgatcaaa gttgacaatt gaaaaaaaaa cacgttgtgt aaataatttt gaccacctct      1680
     gtataaatat atctttaagt atatttataa ggaatatatt taattataat aatataatta      1740
     tatagtatac                                                             1750
//
ID   BARI_DM     repbase;    DNA;    INV; 1726 BP.
XX
AC   .
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   D.melanogaster Bari-1 mobile element DNA.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposon;
KW   Mobile genetic element; DMBARI1; BARI_DM.
XX
NM   BARI_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1726
RA   Caizzi R.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (22-JUL-1992). R. Caizzi,
RL   Nodo Nazionale Italiana, (Area di ricerca CNR-Bari), Via Amendola
RL   165/a, 70126 Bari, ITALY.
XX
RN   [2]
RP   1-1726
RA   Caizzi R., Caggese C. and Pimpinelli S.;
RT   "Bari-1, a new transposon-like family in Drosophila melanogaster
RT   with a unique heterochromatic organization.";
RL   Genetics 133(2), 335-345 (1993).
XX
DR   [2] (Consensus)
XX
CC   repeat_unit 1..28
CC   /rpt_type=TERMINAL INVERTED REPEAT
CC   CDS 379..1398
CC   /gene="ORF"
CC   /codon_start=1
CC   repeat_unit 1701..1728
CC   /rpt_type=TERMINAL INVERTED REPEAT.
XX
FH   Key           Location/Qualifiers
FT   CDS           378..1394
FT                 /product="BARI_DM_1p"
FT                 /translation="MPKTKELTVEARAGIVARFKAGTPAAKIAEIYQISRR
FT                 TVYYLIKKFDTVGTLKNKKRSGRKPVLDQRQCRQILGVVAKNPSASPVKIA
FT                 LESKNTIGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEY
FT                 VKKPLDFWFNILWTDESAFQYQGSYSKHFMHLKNNQKHLAAQPTNRFGGGT
FT                 VMFWGCLSYYGFGDLVPIEGTLNQNGYLLILNNHAFTSGNRLFPTTEWILQ
FT                 QDNAPCHKGRIPTKFLNDLNLAVLPWPPQSPDLNIIENVWAFIKNQRTIDK
FT                 NRKREGAIIEIAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY"
XX
SQ   Sequence 1726 BP; 595 A; 291 C; 332 G; 508 T; 0 other;
     cagtcatggt caaaattatt ttcacaaagt gcatttttgt gcatgggtca caaacagttg        60
     cttgtgcagc aagtgggggg aggtgaaatg caaaaaaact tttgcttttg caaattcaaa       120
     cctatgcaga gtcagatgaa agaagaattg aaaaaataac tgttcctatg cgcaaggaag       180
     aggcaaatga agagatcttt atcagttgtc agaagtattt gcacacggtt tcgtcgcatc       240
     acaattattt tcacaacgca atttcttctt cagtgattgg tttagagtga caagtgccgg       300
     tttgtttgct taaatacatt taaattattg aataaaaatt agatttaatc attttcctat       360
     tacagttatt aaataaaatg cccaaaacaa aagagttaac agttgaggcc cgggctggta       420
     ttgttgctag gtttaaagcc ggtacacctg cggccaaaat agctgaaata tatcaaattt       480
     cgcgtagaac tgtctactac ttaataaaaa agtttgatac agttggcaca ttaaaaaata       540
     aaaaaagatc aggccgaaaa cctgtgctgg accaaaggca atgcaggcaa atacttggag       600
     ttgtggcgaa gaatcctagt gccagtccgg taaaaattgc cttagaatca aaaaatacaa       660
     ttggcaaaca agttagtagt tctacaattc gtcgcaggct aaaagaagct gattttaaga       720
     catacgttgt tcgcaaaacg attgagatca caccaaccaa caaaacaaaa cgtcttcgat       780
     ttgcgttgga atatgttaag aagcctcttg acttttggtt taatatttta tggactgatg       840
     agtctgcatt tcagtaccag gggtcataca gcaagcattt tatgcatttg aaaaataatc       900
     aaaagcattt ggcagcccag ccaaccaata gatttggtgg gggcacagtc atgttttggg       960
     gatgtctttc ctattatgga ttcggagact tggtaccgat agaaggaact ttaaatcaga      1020
     acggatacct tcttatctta aacaaccatg cttttacgtc tggaaataga ctttttccaa      1080
     ctactgaatg gattcttcag caggacaatg ctccatgcca taagggtagg ataccaacaa      1140
     aatttttaaa cgaccttaat ctggcggttc ttccgtggcc cccccaaagc ccagacctta      1200
     atatcattga aaacgtttgg gcttttatta aaaaccaacg aactattgat aaaaatagaa      1260
     aacgagaggg agccatcatt gaaatagcgg agatttggtc caaattgaca ttagaatttg      1320
     cacaaacttt ggtaaggtca ataccaaaaa gacttcaagc agttattgat gccaaaggtg      1380
     gtgttacaaa atattagtat tgtatttata taaaataaag aaattcttat gttgaaatta      1440
     gatgttaagc tgaaatttac taaattaagt tgagtgaaaa tacttttgaa gcgcaataaa      1500
     catgtgaaaa tactattgac aacttgcatg catattttct tttgctttaa gctttgtact      1560
     atgaaccgtt atctttcgta tttcttttcg actaccttct gcatagatca agctaagcga      1620
     taagaactat ttcaggcaaa tcggacaaca acaagaagaa atataacaaa aagaagttga      1680
     agtttgcaaa tattgtgcgt tgtgaaaata cttttgacca cctctg                     1726
//
ID   BATUMI_I    repbase;    DNA;    INV; 7675 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 4)
XX
DE   BATUMI_I is an internal portion of BATUMI endogenous retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   internal portion; polyprotein; BATUMI_LTR; BATUMI_I.
XX
NM   BATUMI_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7675
RA   Tulin V.A.;
RT   "BATUMI_I.";
RL   Direct Submission to Genbank (12-AUG-1998)Tulin A.V., Department
RL   of Molecular Genetics of Anymals, Institute of Molecular Genetics
RL   RAS, 46 Kurchatov sq., Moscow 123182, RUSSIA.
XX
RN   [2]
RP   1-7675
RA   Tulin V.A. and Kogan L.G.;
RT   "New retrotransposon of Drosophila melanogaster.";
RL   Unpublished.
XX
RN   [3]
RP   1-7675
RA   Bao W.;
RT   "Sequence purified.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
CC   BATUMI_I's ORF encodes 1571 aa-long polyprotein (position 1469-
CC   6184) and it's flanked by identical long terminal repeats
CC   (BATUMI_LTR).
CC   [3]: sampled sequence, one inserted solo-LTR is removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           1469..6181
FT                 /product="BATUMI_I_1p"
FT                 /translation="MPIGDDKKKLSADKPRSIFSPQGPKSPRIPSISVKTP
FT                 AQISDDCATPSKATVQRTAKNMAASDLALAKFISVSDAQANLRLRSTLRNP
FT                 QLQPSRCLASVATKSEAYGTRLKRIRPLLRVPCVSRRAAASGMPILRASYS
FT                 YCYSVYERCVAQLVDKIEQGHFSVHPKRTLRPRPTFPLAVGCLHAIQEFSQ
FT                 VTIFAGRFPDLLHAIYINNPRLTPFEKLFHLNAKTSGDAHAIVSISPLTKR
FT                 GFSSAWENLIERFENKRLLVNSQLKILFNVQSIPQESGAALKVMQSTVQGC
FT                 LTALELSGINTENWDCLLEYLCSSKLPKITLSLWEQSLHKKADIPTWGELN
FT                 TFLTERHRTLEAIDDVRPSVPSQSHSKAMNSSGPSRDGKLASDLCNKENHP
FT                 VRVCRVFSKWSVDDRSAYIKRKQLCLNYFAKGHQLRECKDRQSFTWWPASH
FT                 VVAPKQPLFQQFKPFKSCKPNFRYSGQFRSKRASRCSKLFCHGSRAILLGS
FT                 AIINSSHLGTNFKARALIDSGSEATFITEPLFNLIRLPFQVVQAQVSGLNQ
FT                 TVAAQFKNAAVSPSDLRLGRVAVGDDGLCPPSTSRKSAFLPNSAKFLRDLP
FT                 DFPLADPKFYESAPIDVLIRSPHPASVLLSGAKTNICGSLLGQETIFRWVL
FT                 TGPVSASAQSRIPLFRHRSPTRTIIHWTNSSQNLGRWRIYQQSCKRIRFHV
FT                 RERVGKCLRRHQCGKYVVTLPFRDPEHIGCGLGHSRSWALAQFLKNEQRLK
FT                 KDEALKARYDSVIQEYLDLKHMRQVLPTHDCNAYYMPHHAVLKPESVTTKL
FT                 RVVFNASSPSSNGTSLNDILHAGPVLQSDLTVQILKWRDFRYVFSADIQKM
FT                 YRQIWVDPKHTPFQRILFRNNRGEIRDFELKTVTFGVNCAPLLAIRVLQQL
FT                 AADEELSHPKASNVIRNFMYVDDVLAGADSTEEAQLMVHELRDALNSSSSR
FT                 QRWLSKRPLQRQVLSQIAKLFDPAGWLAPFIVRAKIFMQEIWLQELGWDEN
FT                 VPNDLFQRWLNFLQSYSVFEQIRIPRWLSFHPDFKVEHHGFCDASQKAYGA
FT                 AIYVRGEVGSAIMVQLLTAKTRVAPVKTVSLPRLELCGALLLSEMAAAIIP
FT                 QMPTINSKLYCWTDSTIVLAWLSKPACQWTTFVANRETKIAQATKTENWSH
FT                 VQSEHNPADLASRGVSLQDLADSQLWWHGPTWLQNPRNQWPTQVNAPVTDL
FT                 EKRALKVHLAKAPSEELLARFSKLEKALRVLAYVYRFIQRCRKQTSPSDVH
FT                 LLATEIAAAERFLISNTQRREFPVEYHCLSEKRPVPSSSAILSMNPFLDPQ
FT                 GLIRACGRVAASESPQYNERHPVILPYNCLLSRLLAKFTHRTTLHGGNQLM
FT                 VRLIRSKYWIPRIKNLMKAVVNSCKVCVIHKRRLQSQLMGVLPKERASFSR
FT                 PFTVSAWITPVRDIKNYTGRACVITKGYVLVFVCFSTKAIHLEPTSDLTTE
FT                 KFLAAFSRFVSRRGCPRQVQSDNGKTFVGAATLLSRDFLQAVKESVTNAYI
FT                 HQEMQWQLFSGGTQYGRPLGSRRKKLQDAILQMHGHTKIHVRRTLHALGKN
FT                 RSVP"
FT   CDS           join(6517..6768,6772..7095,7099..7674)
FT                 /product="BATUMI_I_2p"
FT                 /translation="MLVSEAIGASMLVMRTARKRFSALSFRNLAHVRRGWI
FT                 TAADSASVGFNTSGTSALHGTTCVRFVDEEPCARSRMSKGDRKRNEKRMIS
FT                 DSELQLRTRGETYYCGDSELRRQKHLFCHWTFNNSTCSTDVYYTTLPSAPG
FT                 KTDSILPSRHSLEGKLSSLMTTMSSMASPTGANPASSFGLVPTFPPAQSAN
FT                 SAEFTATTTGIDDARPITLVAAATPQREHPSHSAGQDGDRDEDLQTAALID
FT                 PCSPMSCIDASLASAFKLSMTNVGDEKVCTTTIRSRIDANTKLEVVLKIEP
FT                 RVRIRTPVRALSDTVVSKYRDIMLADDGFHRPATVSMVLGADIYPKVIQSG
FT                 FLTFDEGMPVAQKTVFGWIVSGACSLPRWLCCNPSDCKGGG"
XX
SQ   Sequence 7675 BP; 2051 A; 1985 C; 1685 G; 1954 T; 0 other;
     ttttggtcct tcgagccgga tcacctggat tttcaagttt gtccaccagc gaacaaatta        60
     taagataagt acgaaatttc cattcctttt aattgccggt ctgcagcaaa aggttcgaaa       120
     atccaatttc gttcaatttg ctgtaagatt tattgtcaaa tctaacggat ttctccgaca       180
     aaaggcaatt aaagaaaagt acttatccaa tctcacgggc gccgcatatt actcgccgtt       240
     ctccgttctc ctttcaccct cattcgtgaa aatttctaaa gtccaaatgg gcgaatatat       300
     ttaaatatta atccagtgcg ataatgcaaa attccaaatg tgaaaaagtg aataatttgt       360
     gccaagttca gtgaaacttt ctaagtccaa agctctgcca aaattggcaa aaattctgtt       420
     ctcgtttcac tgtgtcaaag cgaagccaaa cttcttttcg caacacattt ttgctttaac       480
     tccgcagtcc acttaatacc atttgctttg ctatcgaaga ataccacaac gaaacaaaca       540
     acaccatacc ctctggccat tcaaataaca tattaattaa catttccgca gttccatatc       600
     tcttacatca acatatacct actccatact cttgcatata ttcacatctt acacaatata       660
     tcctcaccat atattacata tattacatca acatataata tccacatata ttaccgacat       720
     acattgcgca tattatcagc attcctttaa cgtataccaa agtttaaatt cgatcccgtc       780
     ggcaaatcca accacaaata aaatttattc caagtgccga cgcggaaagg cgttttcttt       840
     tccatcaatt ttttccgtaa atttccaaat taatttccga gcaataaatt aaaagcggtt       900
     ttttcttttt ttttaacaaa taacttattg ttgaaaacat ttattaaatt attaaaaatt       960
     atataaataa tacgaccgcc aaatacaagt cgttcacccg acaaatattt tttcctgtat      1020
     tgcttggata ttaatttgtg tttgttttag aagtacttac aacgcggaga aaagactcca      1080
     aatccaccat tccattttct ccgtttccag ttataaacaa aaaaataaat aaaattttct      1140
     tccttctaat aaacatttta ttttaccgtg ttcacattcc aagtgttcca accgtaaata      1200
     aggtggacct aattaccata aatcacaggt catttataca attcgctgtt cactccgagt      1260
     cacctgtcca attagtctaa actacggcgt ttccacttcg caaattcaac accactttct      1320
     cacccattac atcctatacg gtccttttcc gctgctttat accgttcacg gcaggaagct      1380
     taaatttatt aagtggaatc tgtctacttt ttcaaaagtg tgaccgggct ccaaaaacgc      1440
     ttcccttcca tttcgtattt cttcgattat gcccatcggg gacgataaga agaaattgtc      1500
     cgctgacaaa cccaggtcta ttttttcacc acaagggccc aagagtccaa gaatcccaag      1560
     catttcggtg aaaacgcctg cgcagatttc cgacgactgt gccactccat ccaaagccac      1620
     agtacagcgc acagctaaaa atatggctgc ttccgatcta gcgctagcca aattcatttc      1680
     ggtttctgac gctcaagcga atttgaggct cagatcaaca ctccggaatc cgcagctcca      1740
     accgtcacga tgcttagcgt ccgtcgcgac caagtccgaa gcctatggga caaggttgaa      1800
     aagaattcga cctctgctca gagtgccttg tgtcagcagg cgagcggcag caagcggcat      1860
     gcctattctc agggctagtt acagttattg ctattcagtc tatgaaaggt gtgttgccca      1920
     gctcgttgat aaaatcgagc aggggcactt ctcagtccat cccaagcgaa cgctgcggcc      1980
     caggcctaca tttcctctgg ctgtcggttg cctccatgcg atacaggagt tttcgcaggt      2040
     gactatcttc gctggccgct ttccggatct tttacacgcc atttatatta ataatccacg      2100
     gctgactccg ttcgaaaagt tattccactt aaatgccaaa acaagtggcg acgcgcatgc      2160
     catagtttcg atttcgcctc tcaccaaacg agggttttcc tctgcgtggg aaaacctaat      2220
     agagcgtttc gaaaataaac gattgttggt aaacagtcaa ttgaaaatac tgtttaatgt      2280
     gcagtcgata ccacaggaat ctggggcggc cttgaaggta atgcaaagta ctgttcaagg      2340
     ttgcttgact gccttagaac tgtcaggcat caacactgag aactgggact gcctgctgga      2400
     atatctgtgt tcatccaagc tcccgaagat aactctctcc ttatgggagc agtctctaca      2460
     taagaaagcc gacatcccga catggggaga actgaacacc ttcctcacag aacgtcatcg      2520
     aaccctagag gccatcgatg atgtgagacc gtccgtacca agtcagtcgc actccaaagc      2580
     gatgaactca agtgggccct ctagagatgg caagctggcg tccgacttgt gcaacaagga      2640
     aaaccatcct gtccgtgtat gtcgcgtttt ctccaaatgg tcggttgacg accggtcagc      2700
     ctacattaaa cggaagcagt tatgcttaaa ctactttgca aagggacatc agcttcgtga      2760
     gtgcaaagat cgacaaagtt ttacttggtg gccggcatca cacgttgttg caccgaaaca      2820
     acctcttttc cagcaattca agcccttcaa atcctgcaag cccaatttcc gctactcagg      2880
     ccaatttcgt tccaaacgag caagccggtg ttcaaaatta ttttgccacg gctcaagagc      2940
     tatccttctt ggcagtgcca taatcaatag ttcccatctt ggcactaact ttaaggcacg      3000
     cgccctgatc gactccggat cagaggcgac attcataacc gagccactgt tcaatctaat      3060
     tagattgcca ttccaggtgg ttcaagccca agtctcgggc ttaaaccaaa cagtagctgc      3120
     tcagttcaag aacgctgcag tttcaccatc cgatctccga ctaggccgcg ttgcagttgg      3180
     agacgacggc ctatgtcctc cctcaactag ccggaaatct gccttcctac ccaattccgc      3240
     aaaatttctt cgggatcttc ccgattttcc actggcggat ccaaaattct atgagagcgc      3300
     cccaatagat gtacttatcc ggagcccaca tcctgcttcg gtgcttctga gtggagcaaa      3360
     aaccaacatc tgtggctctc tcttggggca agagaccatt ttccgctggg tactaactgg      3420
     gccagtgtca gcctcagccc aaagcaggat tcctcttttt cgacacagat ctcccacgcg      3480
     tacgataatt cactggacaa actcctcaca aaatttgggg aggtggagga tataccaaca      3540
     aagttgcaaa agaatccgat tccatgtgcg agaacgggtt ggtaaatgct tacgacgaca      3600
     ccagtgcggc aaatatgtcg ttactctgcc ttttcgcgac ccagaacata tcggttgcgg      3660
     gctagggcat tctaggtctt gggcgttggc tcagttcttg aagaatgagc agcgtctaaa      3720
     aaaagatgag gccttgaaag cgagatacga ttcggtgatc caggaatatc tcgacttaaa      3780
     gcacatgcga caagttctgc ctacccatga ttgcaacgcc tattatatgc cacatcacgc      3840
     cgtcttaaaa ccggagagtg taactactaa actccgtgta gtattcaatg cctccagccc      3900
     ttcatcgaat ggtaccagtt taaatgatat ccttcatgct ggccctgtct tgcagtccga      3960
     cttgacagtg caaattctga agtggcgcga tttccgatac gtgttcagtg ccgatattca      4020
     aaaaatgtat cggcagatct gggtagatcc gaaacacact ccattccagc gaatactttt      4080
     ccgtaacaat agaggggaaa tcagagattt cgaattgaaa acagtaacct ttggagtcaa      4140
     ttgcgcgccc ttgctggcga tccgagtact gcagcagcta gcagctgacg aagaactcag      4200
     ccatccaaaa gctagcaatg tcattcgaaa tttcatgtat gtggatgatg ttttagccgg      4260
     agcggactct acggaagaag ctcagctcat ggtgcacgag ctccgagacg ctctgaattc      4320
     ttcttcgtcc cgccagagat ggctatcgaa acgtccttta caacgccaag tcctgtccca      4380
     aattgccaaa ttgttcgacc ctgcaggctg gttagcaccg tttatcgttc gagctaaaat      4440
     tttcatgcag gagatttggc tacaggagct tgggtgggac gaaaacgttc caaatgacct      4500
     ttttcagcga tggcttaatt ttctccaaag ttattcggtt ttcgagcaga tacgcattcc      4560
     acgctggcta tcgtttcatc cagatttcaa ggtcgagcat catggctttt gcgatgcatc      4620
     gcaaaaggct tatggcgccg caatatatgt ccgcggagaa gtgggcagcg ccattatggt      4680
     gcaactccta accgccaaaa cccgggtagc accagtcaaa acggtttcgc tcccaagact      4740
     cgagctctgc ggagcgttat tgctttccga aatggctgca gccatcattc cgcagatgcc      4800
     tacgattaac tccaaacttt actgttggac ggactccacc atagtgcttg catggttaag      4860
     caagccagca tgccagtgga ccacatttgt agccaatagg gagacgaaga tcgcccaggc      4920
     cacaaaaaca gagaattggt ctcatgttca atctgagcat aatccagcag acctggcaag      4980
     tagaggagtt tccctccaag atctagccga tagccagtta tggtggcacg gaccgacttg      5040
     gttgcaaaat ccacgcaacc aatggcctac tcaggtcaac gctccggtga ccgacctgga      5100
     gaagcgtgct ctaaaagtcc atctcgcgaa agctccttct gaagagttgt tggcacgttt      5160
     ctccaagcta gagaaagctc tacgagtcct tgcctatgtt tatcgcttca ttcagcggtg      5220
     caggaagcag acatctccat ctgatgttca tctactggcc actgaaatcg ccgccgccga      5280
     gcggttccta atttcgaaca ctcaacgcag agaattccct gtggaatatc actgcctaag      5340
     tgaaaagcgt ccagtgccaa gttcaagtgc catcctaagc atgaacccgt ttctagatcc      5400
     gcaaggactg atcagggcat gcggccgtgt ggcggcttcc gaaagccctc aatacaatga      5460
     acgccatcca gtgattcttc cgtataactg cctgctttct cgcctccttg cgaagttcac      5520
     gcatcgcaca actctccatg gtggtaacca gttaatggtg cgcctcatcc ggtcgaaata      5580
     ctggattccg agaatcaaga acctgatgaa agcagtggta aattcgtgca aagtatgtgt      5640
     gatccacaaa aggcggttgc aaagccaact gatgggtgtc ctgcccaaag aaagagcatc      5700
     gttctcccga ccattcacgg tatcggcatg gattacgccg gtccgcgata taaagaacta      5760
     tacgggaaga gcatgtgtta ttacaaaggg gtatgtgtta gtttttgttt gtttctccac      5820
     caaggccatc cacttagagc ctacatctga cttaacgacc gagaagtttc ttgccgcttt      5880
     ctctcgtttt gtatccagga gagggtgtcc acgtcaagtc cagtcagaca atggcaaaac      5940
     ctttgttggc gctgccaccc tgctttcccg cgatttcctt caagccgtaa aagagtcggt      6000
     gacgaatgcc tatattcatc aagagatgca atggcaatta ttctccgggg gcacccaata      6060
     tgggaggcct ttgggaagca ggcgtaaaaa gcttcaagac gctattttac aaatgcacgg      6120
     ccacacgaaa atacacgttc gaagaactct ccacgctctt ggcaaaaata gaagcgtgcc      6180
     ttaactccag gccgctctct cctatgtctg aagatccgac agacttgctg gctctgacgc      6240
     cagggcattt ccttgtcggg ggacccctta tgtccacggt ggaacccgaa gtaaaggggg      6300
     aaacgaaatc ccttcttaat cggtggcagc atttgaaggc tctccatcag cagttccgtg      6360
     tgcgatggaa agaagagtac ctcaaagaac tccacaagcg ttctaaatgg caggtcccgt      6420
     gaacttcgag ctaaaatact cgtgcatgtg gagcagcgtg tggtgggatc ggtcgcactt      6480
     cttgcaacga tcaccgcttc ggcagtctcc cgtggaatgc tcgtgagcga ggcaattggc      6540
     gctagtatgt tggtaatgag gactgctcgc aaacgctttt cagcgctgag ctttaggaac      6600
     ctcgcgcacg tccgaagagg atggattacc gcggcagact cggcatcggt aggatttaat      6660
     acctcgggta cgtctgctct ccacggcacg acctgcgtgc gttttgttga cgaggagcca      6720
     tgtgcgcgta gtcgaatgtc gaaaggagat cgaaaacgaa atgaaaaata acggatgatt      6780
     agtgatagtg aactacaact aaggacgaga ggagagacct attattgtgg agattcggaa      6840
     ctccgtcggc aaaagcacct tttttgccac tggacgttta ataactccac gtgcagtacg      6900
     gatgtttact acacgacgtt gccgtcagct cctgggaaaa cagactcaat tctgccgagc      6960
     cgccactcat tagagggcaa gttgtcgtcc ttgatgacga ccatgtcatc gatggcgtcg      7020
     ccaaccggcg ccaaccctgc aagcagcttc ggcctcgtcc caacgttccc gccggcacaa      7080
     tccgccaact cagcgtagga gttcaccgcc acgacgaccg gaatcgacga cgccaggccc      7140
     atcactctcg tcgccgctgc aacgccacag cgtgaacatc cttcccacag cgctggtcaa      7200
     gatggagacc gggacgaaga ccttcagacc gcagcactca tcgatccgtg cagccccatg      7260
     agctgcatcg acgcttcgtt ggcgtcagcc tttaagcttt cgatgaccaa tgttggcgac      7320
     gagaaggtct gcacgacgac gattcgctcc aggatcgacg cgaacacgaa gctcgaggtc      7380
     gtgctcaaga tcgagcccag ggtgcggatc cgtacacctg tccgggcatt gagcgacacc      7440
     gtagtgtcca agtacaggga catcatgctg gcggatgacg ggttccatcg gcctgctacc      7500
     gtatccatgg tcttaggagc agacatttat cctaaggtta tccaatccgg attcctgacc      7560
     ttcgacgagg gaatgccggt cgctcaaaag accgtgtttg ggtggatcgt gtccggtgcc      7620
     tgcagcttgc ctagatggct atgttgcaac cccagtgatt gcaagggggg cggaa           7675
//
ID   BATUMI_LTR  repbase;    DNA;    INV; 272 BP.
XX
AC   AJ010298;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   05-MAR-2011 (Rel. 4.06, Last updated, Version 2)
XX
DE   BATUMI_LTR is a long terminal repeat from BATUMI endogenous
DE   retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   BATUMI_LTR; BATUMI_I.
XX
NM   BATUMI_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-272
RA   Tulin V.A.;
RT   "BATUMI_LTR.";
RL   Direct Submission to Genbank (12-AUG-1998)Tulin A.V., Department
RL   of Molecular Genetics of Anymals, Institute of Molecular Genetics
RL   RAS, 46 Kurchatov sq., Moscow 123182, RUSSIA.
XX
RN   [2]
RP   1-272
RA   Tulin V.A. and Kogan L.G.;
RT   "New retrotransposon of Drosophila melanogaster.";
RL   Unpublished.
XX
DR   GenBank; AJ010298; Positions       1     272.
XX
SQ   Sequence 272 BP; 64 A; 88 C; 48 G; 72 T; 0 other;
     tgttcaagtt acgctcaccc gctgtcaccc gctgtcaccc gctctccgct ccctcttacg        60
     ctctcccgct cttcacctca gagtctccaa ggagtcctcg ggcttgggat agcctaacta       120
     attagaataa gcatcagtgt aaaaactaac cacgctgaat aaacatacgc ccggtcgccg       180
     cgcaattacg aaaagtctag tgtttgcttt ccttcgagtg tttcttttca gcatatttga       240
     attcaggaca gccatccccc tacatcccaa ca                                     272
//
ID   BEL-1-I_NVi repbase;    DNA;    INV; 5568 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: internal portion -
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5568
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 742-742 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(389..3166,3028..5346)
FT                 /product="BEL-1-I_NVi_1p"
FT                 /translation="MAPPLRKLVASQARRLTEIRGLRSRLLAKPPASLNKN
FT                 ILQARVDALKEVWDEARRTHSEIVARDDAEADAYVTEDNFGDLQGAYEEAL
FT                 DEFLTLLSQFEVADQSTLPGGLLNSTASDAGFTKLPKINLPSFSGNYEDWA
FT                 SFRDNFRNMVHDLPRISDATRLQYLKMCLTGSAADLVKEIPTTNANYASTW
FT                 KALELRYHNPRLIITRYLTAFMALPHLKKESGDELRFFIDEATRIVRALEN
FT                 LKMPIDQWDVWFVFLLSERLDPESRSRWESLLSEKERKKIESGAGVGQEVT
FT                 ESSYTPATFHEFIEFLETRAQTLGVLAPDRRGEKRSAAPLKSIHPRKVFHA
FT                 NSSQCPLCAGPHALMRCSQYKEKKPQDRQKEVKRLRLCFNCLGHHRANSCS
FT                 SSGRCSECKQKHHSSLHDPSRSSQGSSSTAPKKDQGNSGSGSAVVLHAANS
FT                 LVSSRKILLATARVLVVGPKNKGTYVRALLDQGSEASFVSEAIVQLLELPK
FT                 RRTHVPLSGLGASAAGTARSIVPLTLRSAVDPGFQVETEMLVLXKLTSLLP
FT                 SYEVSEKLAREQFSGVTLADPEFAISKKIDMILGADLYGQLLRSGVKKSST
FT                 SQLVAQNTVLGWIVSGPMDSGMTRRAAGAATQAPVQAFHCAPQDDLENLLQ
FT                 RFWTLEEFLSPSFKMKPEDERCERIFQDTHRRDAQGRYVVKLPLKPDLPSV
FT                 GAETRRMALGSLSNLHRRFSRDSRIANSYREFMEMYEKLGHMTRVPPSEVH
FT                 KADAWYLPHHPVVQMLLLIWKLRVVFDASRRTKDGHSLNAFLLTGPPLQSD
FT                 LSLILLNWRRYRFVFTADIIKMFRQIQVEPEHQDYQRIVWSPDAASEPVDF
FT                 RLTTVTYGTACAPYLAIRTLSQLVKDEGHRFPLGARCLESSWTSGLRTIRS
FT                 CFQIQHSRYRRSRSVKMSRSRLRSSVSSRGSLSRIELDKWAANHQELLPDS
FT                 AQQVSEKQIGEDESVKALGVHWVPSQDNFKFNAVNLENVAAAYTKRSVLSN
FT                 IARLFDPLGWLAPVTVMAKILMQDMWILKCDWDSPLPAEIRERWYDYCKGL
FT                 SALPSLSIERWLGGTANCSYQIHGFSDASSRAYAAVVYLRIDEGNGRFRVS
FT                 LLAAKSKVAPVKTVSIPNLELCGAALLVKLILHVTKLEFLRGLPIFAWSDS
FT                 QIVLTWLRKHPCHWKTFVANRVSLIQTELPSATWAHVPTKENPADLATRGV
FT                 QPGELANCALWWQGPAWLSLSPTEWPRPADPVRVNHARPRSEESEILTRFS
FT                 SLTRLVRVVAFCRRALDRIRIRGTPAESASSPFLTTAELSAARVAVIRLAQ
FT                 AGAFAEEIKLLRSGKRLPKGNRLSXLNPFLGEEDGLLRVGGRLAHSGLSFD
FT                 RKHPPILPQNSALSLLFVRHAHHQCLHGGPTLTSSILMPQVWILGRNRIVK
FT                 STIRACVPCQRVKPHSAQQLMGELPADRVTSSRAFSHSGLDYAGPFQIRMS
FT                 KGRGNRSFKGYIALFVCFATRAIHLELVGDLTSASFICAYRRFVGRRGICQ
FT                 NLYSDNGTNFQGADKELRSMFQRASDFYKKVGAVLANDGTSWTFIPPSAPH
FT                 YGGLWEAGVKSVKHHLKRVVGEHTLTFEEFSTVLVEIEACLNSRPLGALSA
FT                 DVNDLRALTPSHFLNEGVSVLLPEADCPKLPENRLSRFQLLQRIRNNFWKR
FT                 WSTEYLLHLQEREKWRDPSENFAVGQLVW*"
XX
SQ   Sequence 5568 BP; 1168 A; 1301 C; 1553 G; 1542 T; 4 other;
     tggtgccccg ggtgaggagt gagtgattgt ttgggttttt aaaatcaata atttcaaagc        60
     gaacttgtaa gcgagcgagt cgctgccggc gtcggtcggc agttcgcgga agcggccatt       120
     gtcggcgagc gggctacggc ctcgtgcgtt attttcgcgt ttcagcttcg cgccgtagac       180
     ttgcggcgta aacacagcga ttctgggaat cgagtcgtga gtagcacact catacagcgc       240
     attctcaatt attatttcga atttcactct cattgttgca tttgataatt cctctcgagt       300
     tcgtttgtcg attatatttc ggtgttttct tttcttgttc gaaatttgat tttgtcctct       360
     cgtttgcgta tttcaaggcc agtctaccat ggctccaccg ctgaggaagt tggtagcttc       420
     gcaggcaaga cgcttgacgg aaatcagggg cttgcgtagt cgtttgctcg ctaagccccc       480
     tgcgtcgctc aacaaaaaca tcctccaggc tcgagtcgac gctttgaagg aggtctggga       540
     tgaggctcgg aggactcact cggagatcgt cgccagagat gacgctgagg cggatgcgta       600
     cgtcaccgaa gataacttcg gggatctcca gggggcttat gaggaggctc tcgatgaatt       660
     tttgacgttg ctgtcgcagt ttgaggtcgc tgatcagtca acacttcctg gcggattgct       720
     gaattctact gcgtcagatg ctgggttcac gaaacttccc aaaattaacc ttccttcgtt       780
     ttcaggcaac tacgaggatt gggcgagttt tagggataat tttaggaaca tggtgcatga       840
     tttgcctcgg atttctgatg ctactcggtt acagtacttg aaaatgtgct tgaccggtag       900
     cgcggctgat ttagtgaagg aaattccaac tactaacgct aactatgcaa gcacatggaa       960
     ggcgttggag cttcgttacc ataatccgag gctcatcatc accaggtact tgacggcttt      1020
     tatggctctt cctcatctta agaaggaatc aggtgatgag ttacgctttt tcattgatga      1080
     ggctacgcgt atcgttcgtg ctctggagaa tttgaagatg ccgatagacc agtgggatgt      1140
     atggttcgtt tttctcttgt ctgagcgctt agatccggag tctcgtagtc gatgggagtc      1200
     cttgcttagc gagaaggagc gaaagaagat cgagtcagga gcaggcgtag ggcaggaggt      1260
     cactgagtcg tcgtacactc cggcgacatt ccacgagttt atcgaattcc ttgaaactcg      1320
     agctcaaact cttggcgtgc tggctcctga tcgacgtggc gagaaacgat cggctgctcc      1380
     gcttaaatcg attcatcctc gtaaggtgtt ccacgcgaac tcttcgcagt gtcctctctg      1440
     tgctggtcca cacgcgctga tgcgatgctc tcagtacaag gagaagaagc cccaggatcg      1500
     ccagaaggag gttaagcggc tccggctctg tttcaactgt ctgggacatc atcgagcgaa      1560
     ttcttgttcc tcttcgggtc gttgttcgga atgtaaacaa aagcatcatt cctctcttca      1620
     tgatccgagt aggagcagtc aaggatcatc gtctactgcg ccgaagaagg accaagggaa      1680
     ctccggtagc ggctcagcgg tggttttgca tgctgctaat tccttggtgt cttcgaggaa      1740
     gattcttctt gctactgcgc gtgtgttagt ggtaggccct aagaacaagg gcacgtatgt      1800
     acgggcgctt ttagatcaag gctcagaagc gtcgtttgtg tccgaagcca ttgtgcagtt      1860
     acttgaactg cctaagcgac gtacacacgt gccactgtct ggcctgggag ctagtgcagc      1920
     tggcactgct cggtcgatcg ttccactcac tcttcgttca gcggtagatc caggattcca      1980
     ggttgaaact gagatgctag ttctcyctaa gcttacgtcg cttcttcctt cttatgaagt      2040
     cagtgagaag ttggcgagag agcagttttc aggcgtcact ttagctgatc cggagtttgc      2100
     gatctcaaag aagatcgaca tgattttggg tgctgatctt tatggtcagt tgcttcgctc      2160
     tggggttaaa aaatcctcaa cttcgcagct tgtcgctcag aacaccgtcc ttggttggat      2220
     cgtttccggg ccgatggayt cagggatgac acggcgggcg gcaggtgctg ctacccaagc      2280
     tccagttcag gcgtttcact gcgctcctca ggatgacttg gagaatttgt tgcagcggtt      2340
     ttggactctc gaggagtttt tgtcgccatc ttttaagatg aagccggagg atgagagatg      2400
     cgagagaatc ttccaggaca ctcatcgtag ggacgcacag gggcggtacg tggtgaagct      2460
     gccgttgaag cctgatcttc cgtcagtggg agcagaaact cgacgtatgg ctcttggttc      2520
     tctctcgaat ttgcatcgtc gtttttcacg tgattcgagg attgccaatt cgtatcgcga      2580
     attcatggag atgtacgaga agttagggca catgacgcgc gttccaccgt cggaagtcca      2640
     caaggctgac gcctggtatc tgcctcacca cccagtcgtg caaatgcttc tgttgatatg      2700
     gaagttgaga gttgtgttcg atgcttctcg gcgtacgaag gacgggcact cgctcaatgc      2760
     ttttttgttg acaggacctc cattgcagag tgacctctct ttgattcttt taaattggcg      2820
     taggtatcgc ttcgtattta ctgccgatat aatcaagatg tttcggcaga ttcaggtgga      2880
     accagagcat caggactatc agaggatcgt ctggtcaccc gatgcagcat ctgaaccagt      2940
     tgattttcgt ctgactacgg tcacctatgg gacggcttgt gctccttatt tagcgattcg      3000
     cactctgtct cagttagtta aggatgaagg tcatcggttt cctctcgggg ctcgttgtct      3060
     agaatcgagt tggacaagtg ggctgcgaac catcaggagc tgcttccaga ttcagcacag      3120
     caggtatcgg agaagcagat cggtgaagat gagtcggtca aggctttagg cgttcactgg      3180
     gttccatcgc aggataattt caagttcaac gctgttaacc tcgagaacgt ggctgcagct      3240
     tatacgaaaa ggtctgtcct ctcgaacatc gctcgtttat tcgacccgtt aggttggctc      3300
     gctccagtca cggtcatggc gaagattttg atgcaggata tgtggattct gaagtgcgat      3360
     tgggattcac ccttaccagc tgagattcgt gagcgctggt atgattattg caagggttta      3420
     tccgcattgc catctttgtc catcgagcgt tggttaggtg gtacggcgaa ttgctcttac      3480
     cagatccatg ggttttcgga tgcttcttct cgagcgtatg ctgctgtggt gtatctgcga      3540
     atcgacgagg gtaatggacg ttttcgggtt tcgttattag cggctaagtc aaaggtagct      3600
     ccggtgaaaa cggtgagcat tcccaatttg gagttgtgtg gtgcagctct tctggtcaag      3660
     ctcatcctgc acgtgacaaa gctggagttt ctgcgagggt taccaatatt cgcttggtcc      3720
     gatagtcaga tcgtgcttac gtggcttcgt aagcatccgt gtcactggaa gaccttcgta      3780
     gctaatcgag tttcgttgat ccaaactgag ttgccgtcgg caacgtgggc tcacgttccg      3840
     acaaaggaga atccggctga cttggcgacg cgaggagttc agccgggaga gttggctaac      3900
     tgtgctcttt ggtggcaggg cccggcgtgg ctatcactgt ctccaactga gtggcctcgg      3960
     cctgctgacc cggttcgagt taatcacgct cgtccaagat ccgaggaatc cgagattctg      4020
     actcgatttt cgtctttgac taggcttgtt cgggttgtag cgttttgcag acgtgctctc      4080
     gatcgaattc ggatcagagg aacgccggca gagagcgctt cgtctccttt tctgaccact      4140
     gctgagcttt ctgcagctcg ggtggcagtc attcgtctgg ctcaagcagg ggcgtttgct      4200
     gaggaaatta agttgttgag atcgggaaag agactgccga agggcaatcg gctcagcawt      4260
     ttaaacccat ttttgggcga ggaagatgga ctcttgcgtg taggaggtcg attggctcac      4320
     tccggtctct ctttcgatcg aaaacaccct ccgatcttgc cgcaaaattc tgctcttagt      4380
     ttgttgtttg tccgacacgc tcaccatcag tgccttcacg gcggtcccac cttgacgtcg      4440
     agcattctaa tgcctcaggt ttggattctg ggtagaaatc ggattgtaaa atcgacgatt      4500
     cgcgcatgcg tgccttgtca gcgggttaag cctcactcgg ctcaacaact catgggtgag      4560
     cttcctgctg atagagtgac aagtagtagg gctttctctc attctggact cgattacgcg      4620
     ggtcccttcc aaattcggat gtcaaagggt cgtggaaatc gttccttcaa gggctacatc      4680
     gcgttgttcg tatgtttcgc tactcgtgct atccatctgg agcttgttgg tgacctgact      4740
     tcagcgtcgt ttatctgtgc gtatcgtagg tttgtgggac gtcgaggcat ttgccaaaat      4800
     ctttacagcg acaacggcac caacttccaa ggagcagata aggagctaag gagtatgttc      4860
     cagcgtgcct cagacttcta caagaaggtt ggcgctgtcc ttgccaacga tggaaccagc      4920
     tggacgttca ttccccctag tgcgcctcat tacggtggtt tgtgggaagc aggtgtcaag      4980
     tcggtgaagc atcacttgaa gagagttgtt ggcgagcaca ctctcacttt cgaggagttt      5040
     tctacagttc tggtagagat cgaggcctgt ctcaactctc gtccactagg tgccttgagt      5100
     gctgacgtca acgatctacg ggcgctcact ccctctcatt ttctcaatga aggagtctcg      5160
     gtcttacttc cggaagctga ttgtccaaag ttgccagaaa atcgtttgtc cagattccag      5220
     ctgcttcagc gcattcgaaa caacttctgg aagcgttggt ccacggagta tttgcttcat      5280
     ttacaagagc gagagaagtg gagggatcct agcgagaact ttgcggtagg tcagctcgtc      5340
     tggtgaagga tgatcggtat cctccatcaa aatggccatt gggcagggtc cttgaggtgc      5400
     accctggccc agatggtttg gtgcgagtcg ttaccatcaa gacggctact tcttctctcc      5460
     gacgacatgt tgctcggctc tgccctctag cgttggacga gaaggtgaag aagggctctg      5520
     tgaacgcgst tagggtctga ttcgtctgtc ggacgaaggc gggcggaa                   5568
//
ID   BEL-1-LTR_NVi repbase;    DNA;    INV; 969 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: long terminal
DE   repeat - consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-969
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 743-743 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 969 BP; 181 A; 229 C; 245 G; 313 T; 1 other;
     tgttcgggtt atgtaagagc gggaagggga attttgaatt tcgcgccgta gcgcggcgag        60
     cgctgcagcg agagcggtcg agcgcatgcg cgcgctgatg tgggcctctc ccgtttgcgc       120
     gggctccggc gcgcgggagc acgtgcagtt cagttctgac agctcctctc gagtagtcag       180
     ttgacattgc gcttttgtac ttgcgattgc aaaagcctct ttgtaaattg cgtgcgaata       240
     gagtcgtcat catcgtcctt ttcaggacga tcgacactct ttattgtatc accgtgcgtt       300
     gcgtagtgtg tgtgcatttt gcgtgcggtg tgcggattgt gtgagttctt cgagtgttgg       360
     gatttcggcc acgtgcgagc ttcctcgccg tgtcgatctc cacccggcga ttgctaccta       420
     cgcggcaggg ctgaaaaggc ctgcccgtgg tccaggattg gttccctcga gacgtcgagg       480
     cgtcctgcga ccgaggaagg tgcatcccac caacgtgcgg ccagggcttt acgtcgcgcc       540
     gtccacgtct cgttctgcga ataaggtagg agagctctcc agcgtgcgaa aggtacctcg       600
     cggcgatagg attaagytac ttgcgtttct ttctctgttg ttgtctatag tagagtctct       660
     cttagttttt gtataagcgt acattgtaat tgcgtttctc tctttttgtt tagtctatcc       720
     tagagtcact tttctttgta taatttcctt atttctaaaa taaagctata ggcttgtccc       780
     ggcttttctc tctactccgt gagagttttt acgccgaggc aagtcgtctc tttttctccc       840
     gcgaaattca ttgtgttttg cgttgattta ttcacccaaa cttccctcac tcattccacc       900
     attttaattt aatatatata tatatatata tatatatata tataatttga actcattagc       960
     ttttgttca                                                               969
//
ID   BEL-100_AA-I repbase;    DNA;    INV; 5875 BP.
XX
AC   supercont1.40;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-100_AA_;
KW   BEL-100_AA-LTR; BEL-100_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5875
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.40; Positions 1565389 1559515.
XX
CC   Positions [4571-5143] - Integrase core
CC   'ATTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           263..5569
FT                 /product="BEL-100_AA-I_1p"
FT                 /translation="MSTERRIKSLKMRLKSLTASLSLITNFVDEFDEDTQS
FT                 DEVPVRLESLIKLWTDYSTAQSELESIDENSLDAHIKERTTMESSYYRIKG
FT                 FLLAHNKSPLNQSLSTPTHSEAQVPMSTSQVRLPDVKLPIFDGKLDNWLVF
FT                 HDLYISLVHSSTCLSNIQKFYYLRSSLSHSALQLIQSIPISADNYSVAWNL
FT                 LLKHFQNPARLKQAYVDALFDFTALKRESAAELHNLVERFEANVKVLHQLG
FT                 ERTEHWDILLTRMLSTRLDATTRRDWEEYSSSQQTVKFKDLTEFIQRRVTV
FT                 LQSIQSKVVDTPPFAQVKKPIQRSVSSHGATQVSPRKCLVCSDHHPLYLCG
FT                 NFSKLSAEDKEKEIRRHQLCRNCLRKGHQSRDCSSSTNCRKCRGRHHTLLC
FT                 SSDSSSSSTPKPFATQQSKPIVSSEVTETPISSASATVVDSVSCASTGQQQ
FT                 RTVLLATAMIILVDDNGVEHIGRALLDSGSECCFITERFSQRMKVQRKKIH
FT                 LPISGIGQSSTHAKQQISCIIRSRVGAYSTAVDLLVLPRVTIDLPATSVNT
FT                 STWSFPPGIQLADPSFDSTNPVDIILGAEIFFELFRIPGRIYLGEHLPVLV
FT                 NSVFGWVVSGKSNVGTSGPPVVANIATVADIHRLMERFWKIEEDISPTTYS
FT                 VEEQACEEYFSRTVSRTSEGRYIVRLPFKENVLERLSDNRSTAVRRLHLLQ
FT                 ARLIRNPDLHVQYKAFIDEYNNLGHMQRTHEYEESTVKRFYLPHHAVLRED
FT                 SPTTKLRVVFDASCKTSAGPSLNDALMVGPTVQEDIRSIIMRARKHQVMIV
FT                 ADVKMMYRQVLVDPRDTSVQLIVWKSSPDQPMETYELKTVTYGTASAPFLA
FT                 TRVLIQLADDEGRNYPLAAPVIKKDFYVDDLFSGGENTAEVIELRNQLEAL
FT                 LAKGGFELRKWASNNEAVLDGIPTENRAIKESVELNRDQIIKTLGLHWEPA
FT                 TDCLRYNLETLNSSTQPLTKRLVLSLIARLYDPLGLVGPVVTTAKVFMQDL
FT                 WTLKDDTGEPWSWDRVLPINYQTRWTNYQTLLPNLNNLRISRCILLPEPET
FT                 IQIHIFADASQLAYGACAYIRSTNTAGLVKVSLLSSKSRVAPLKRLSIPRL
FT                 ELCGALLAAELYEKIKLSLQLNAKCYFWLDSTVVLCWLNASPSTWNTFVAN
FT                 RTSKIQLATSNCSWHHIAGLENPADCLSRGLTPEIIVDFDLWWNGPQWLRQ
FT                 HQHLWPTNHATLEQPSEAVEEARRPYLASPSSKPNPSFIDEIVGKYSNVQR
FT                 LIRVVAYCHRFLQNCRSPRSERATSSPLNVEELLQAEHIIIRLVQQQAFEE
FT                 EWKQLKLNQPVSSKSRLKWFYPFVSSDNLIRVGGRLGNAIQPYDAKHQILL
FT                 PRAHQFSLLLVRNYHERHLHAAPQLLLSLLRQRYWVIGARSLAKHVVHNCV
FT                 VCFRARPRMLEQFMADLPASRTIASRPFSITGVDYWGPIHLKPIHRRAAPG
FT                 KAYVAVFICFSTKAVHLELVSDLSTAKFIQSLRRFVARRGLCTELHSDNGR
FT                 NFVGAANELKQLVNSKDYQNAVAQECNKNQIRWHFNPPKASNFGGLWEAAI
FT                 HSAQKHFVRVLGKNTLSHDDMETLLCQIESCLNSRPLVALSDDPSDFEPLT
FT                 PGHFLTGSALKAVPDADYTEIAVNRLSRWHHVQKLYQQLWKRWHLEYLSTL
FT                 QPRSKWLSPPVQIKENQLVIVRDENSPPMHWPTARIVQTHPGSDGIVRVVT
FT                 LQTPTGHFVRPVNKLCFLPISSSVDQQVQTQIQESPSASAQDYQKKHPN"
XX
SQ   Sequence 5875 BP; 1564 A; 1554 C; 1265 G; 1492 T; 0 other;
     tctggtcctt cgaaccggat tacgtcgaaa ctccgtaatt ccggcagtcc tgtggtcgtg        60
     agtcgccatc agccatccgc catcattccc gctggaaggt tccagaacaa tcgataacca       120
     tcattggtgc tgctctactg cattcataat acaaggcaat tgtattgcct atagcaggta       180
     attatctgtc caacttccct ctttcctgct ttgtgcgtgc tacgcttgtt cgtttgtccc       240
     caggacttca tctggtgctg tgatgtccac cgaacgtcgc atcaagtcgc tcaaaatgcg       300
     actgaagagc ctgacagcat ctctcagcct catcaccaac tttgttgacg aattcgacga       360
     agacacgcaa tccgatgaag tacctgttcg cctggaaagc cttatcaagc tatggacaga       420
     ctatagcact gcacaaagtg aactagagtc gatcgatgaa aattccctgg atgcccacat       480
     caaagagcgg acgactatgg aatcgtccta ctatcggatc aagggcttcc tactagccca       540
     caataaatca cccttgaatc aaagcctttc aactccaact cattcagagg cgcaagtccc       600
     tatgtccaca tcgcaggtgc gattgccgga cgtcaagctt cccatatttg atggaaaatt       660
     ggataattgg ctcgtgtttc acgatttgta catatcattg gttcattcat cgacttgtct       720
     ctccaatatc caaaagtttt attacttacg gtcgtcgctt tcgcattcag cgcttcagct       780
     catccaatcg attccgataa gtgccgataa ctactcagtg gcgtggaatt tgctcttaaa       840
     gcactttcaa aacccagcta gactaaaaca agcgtacgtc gatgcactct tcgactttac       900
     ggccctgaag cgcgaatcag cagctgaact acacaacttg gtggaacgtt tcgaggcgaa       960
     tgttaaggtt ctgcaccagc ttggtgagcg tacggaacat tgggatattt tgctcactcg      1020
     tatgctcagc actcgcctag atgcaactac acgaagagat tgggaggagt attcgtcttc      1080
     ccaacaaact gttaaattca aggacttgac tgaattcatt cagcgtcgag tcacagtgct      1140
     tcaatccatc caatcaaagg tcgtcgatac accgccattt gcccaggtaa agaagccaat      1200
     ccagcgttcc gtttcgagcc acggagccac acaggttagc cctcgaaaat gcctcgtctg      1260
     ctcggatcat catcctctgt atttatgtgg gaatttctcg aagctatccg ccgaggacaa      1320
     agagaaagag attcgtcgac atcaactgtg tagaaactgc ttgaggaaag gtcatcaatc      1380
     aagagattgc tcatcttcta ccaactgccg taaatgtcga ggccggcatc atacgttact      1440
     ctgctccagc gactcatcat cttcatccac accgaaacct ttcgccaccc aacagtcaaa      1500
     gcccatcgtc tcttctgaag tcactgaaac tccgattagt tctgcttccg ctacagtagt      1560
     tgactctgtt agttgtgctt ccactggtca gcaacagaga accgttcttc tggctacagc      1620
     aatgatcatc cttgttgacg acaatggtgt cgaacacatt gggcgagctc tccttgattc      1680
     gggaagcgag tgctgtttta ttacagaacg cttctcgcag cgcatgaagg ttcagcggaa      1740
     gaaaatccac ctgccgatca gcggcatcgg tcaatcgtct acgcacgcta agcagcaaat      1800
     atcctgcatc atacgttctc gcgtcggtgc gtactccacc gcagttgatt tacttgttct      1860
     tcccagagtc accatcgacc tacctgctac gtccgtcaac acttcaacgt ggagtttccc      1920
     acctgggatt cagttggcgg atccatcttt cgacagcacc aacccagttg acatcattct      1980
     tggcgctgaa atctttttcg aactgtttcg tataccgggt cgaatctatc ttggtgagca      2040
     ccttccagta ttggtgaatt cagtttttgg atgggtggtc tctgggaagt caaacgtcgg      2100
     cacctccgga cctccagtag ttgccaatat cgccaccgtt gctgacatcc atcgacttat      2160
     ggaaaggttt tggaagatcg aagaagatat ttcacccacc acgtactccg tagaagagca      2220
     agcttgtgaa gaatatttca gccgtaccgt ttcgcgtacc tcagaaggaa ggtacatagt      2280
     ccgcctgcca tttaaggaaa atgtcctcga gcgacttagc gacaaccgta gcactgctgt      2340
     tcgtcgacta catcttttac aagcacgttt gatacgcaat ccagatcttc acgttcaata      2400
     caaggcgttc atcgacgagt acaacaacct tggacacatg cagcgcactc acgaatatga      2460
     agaatcaaca gttaagcgtt tttaccttcc gcatcatgca gtgctccgcg aggatagccc      2520
     tactacgaag ctaagggttg tcttcgatgc gtcgtgtaaa acttctgcgg ggccatcctt      2580
     gaatgacgcg ctcatggtag gaccaaccgt acaagaggac atccgatcaa taatcatgcg      2640
     tgctcggaag catcaagtta tgatcgtggc cgacgttaaa atgatgtacc gccaagtact      2700
     cgttgaccca cgcgacactt cagttcaact tattgtatgg aaatcatcgc cagaccagcc      2760
     tatggagaca tacgaattga aaacggtaac ttacggtacc gctagtgcac catttcttgc      2820
     aactagagta ctgatccagc ttgccgatga cgaaggccgt aactatcccc tagctgctcc      2880
     tgtgattaag aaggattttt atgtggacga tctgttttct ggcggagaaa acacagctga      2940
     agtgatcgaa cttcgaaacc agttagaggc tcttttagca aagggtggat ttgaactacg      3000
     aaagtgggca tcgaataacg aagctgtact cgatgggatt cccactgaaa atcgtgccat      3060
     taaggaatct gtggaattga accgtgacca gattatcaaa acgcttggtc tccattggga      3120
     acccgctacg gattgccttc gctacaacct agagacactg aactcatcca cccaaccact      3180
     cacaaaacgg cttgtcctct ctctaattgc ccgtctatat gacccgctag gcttggtagg      3240
     acccgtcgta acaacagcca aagtgtttat gcaagactta tggaccttga aagatgacac      3300
     tggggaacca tggagctggg atcgagttct accgattaac tatcagacgc gatggaccaa      3360
     ctaccaaact ctactaccaa atctcaacaa cctccgcatt agtcgttgca ttcttctacc      3420
     ggaacctgaa actattcaga ttcacatctt tgccgacgct tcacagctcg cctatggtgc      3480
     ctgcgcctac atcaggtcca ccaacactgc tggattagtc aaggtttcgc tactttcttc      3540
     caagtcgcgg gttgcacctc tcaagcgtct aagcatccca cgcctcgagc tgtgtggggc      3600
     acttttggct gctgaactgt acgagaagat caaattgtcc ctgcaactca acgcaaaatg      3660
     ttacttctgg ctcgatagca ccgtcgtact ctgctggctc aacgcatcgc catctacatg      3720
     gaacacattt gtagcgaatc gaacatccaa gattcagctt gccacctcaa actgctcgtg      3780
     gcaccatatt gctggtttgg aaaaccctgc tgactgtctg tcacgtggtc ttactccgga      3840
     aatcatcgtc gactttgacc tctggtggaa cggacctcaa tggctacgac aacatcaaca      3900
     tctttggcca acaaatcatg caacactcga gcaaccgtcg gaagccgttg aagaagctcg      3960
     ccggccatat ttggcgtcac catcgtcgaa acccaatcct tcgtttattg acgaaattgt      4020
     cggaaaatat tcaaatgtcc agcggctaat tcgagtggtc gcctattgtc atcgttttct      4080
     tcaaaactgc cgaagcccca gaagtgaaag agccacatct tcacccctga atgtcgaaga      4140
     actattgcaa gcagaacata tcatcatccg attggtgcaa caacaagcct tcgaagaaga      4200
     atggaagcag ttaaaactca atcaaccagt gtcgtcaaaa tcacgattga aatggtttta      4260
     cccatttgta tcatccgata acttgattcg agtcggtggc agattgggaa acgctatcca      4320
     accatatgat gccaagcacc aaatcctgtt accacgagca catcagtttt ctctcctctt      4380
     agtacgaaat tatcacgaac gtcatctgca tgcagcccca cagttactcc taagcctact      4440
     tcgacaacgc tactgggtca taggggccag aagtttggct aaacacgttg tccacaattg      4500
     cgtcgtctgc tttagggccc gtcctcgaat gcttgaacag tttatggctg atctaccggc      4560
     atcacgtacc attgcgagtc gaccgttttc cataacaggg gtagattact gggggcctat      4620
     ccatttgaaa cccatacatc gccgtgcagc acctgggaag gcttacgtcg ccgtctttat      4680
     atgctttagc actaaagcgg tgcatttaga gttggtatcc gatctaagca cagccaaatt      4740
     tatccaatct ttacgtcgct tcgtggctcg ccgaggactt tgcaccgaac tgcacagtga      4800
     taacggaaga aactttgtcg gagctgctaa tgagttgaaa caactagtga acagcaaaga      4860
     ttaccaaaac gctgtagctc aggagtgcaa caaaaatcaa attcgatggc attttaatcc      4920
     tccaaaggcg tctaacttcg gcggtctgtg ggaggccgct atccattccg cccaaaagca      4980
     tttcgtccgt gttcttggaa aaaacactct ttctcacgac gatatggaga ccctcttgtg      5040
     tcaaattgag tcctgtttga attcgcggcc gctcgttgcc ttgagtgacg acccatcgga      5100
     tttcgaaccg ttgacacccg ggcatttcct gactggatcg gcactgaagg cagttcctga      5160
     tgctgattat actgagattg ccgtcaatcg actctcgagg tggcatcacg ttcaaaaact      5220
     gtaccagcag ctgtggaaaa ggtggcactt ggagtatctt tctaccctgc aaccaagatc      5280
     caaatggctt tctcctcctg tccaaatcaa ggaaaaccag ctcgtaatcg tccgtgatga      5340
     gaacagtcca ccaatgcatt ggccaacagc acggattgtt caaacacatc ctggatccga      5400
     cggcatcgta agggtagtga cgctccaaac accaactggc cacttcgttc gtccggtaaa      5460
     caaattatgc tttctgccaa tctcatcatc ggtcgaccaa caagtacaaa ctcaaataca      5520
     ggaatcacca tccgcttcag cacaggatta ccagaagaag catccaaatt gaattttccg      5580
     ggcctgttgt aaacagggat caggtgagca cctgtccttt ccatttaatt ttacgtgaac      5640
     ccgctaccgg gtctaatgtt ttgcagaaaa tcatccgttt gacgtctcaa atcaaaacaa      5700
     cgaagttcat cgatcacgca gcaagagtga caacccatca tcgagaatcg tcatcatcat      5760
     catcgacaga gctgtaagaa accaaggtgt ataaactagt aggtgagcta atctactcaa      5820
     gttgtggaga tatgcagcga cctagtcagc aaccgtgttc ctgaaggggc cagca           5875
//
ID   BEL-100_AA-LTR repbase;    DNA;    INV; 474 BP.
XX
AC   supercont1.40;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-100_AA_;
KW   BEL-100_AA-I; BEL-100_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-474
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.40; Positions 1559514 1559041.
XX
SQ   Sequence 474 BP; 141 A; 97 C; 102 G; 134 T; 0 other;
     tgttcgtgta accacgaaaa gagaaataaa attaattcgt gcgccatcta tctgtgagca        60
     aatgcatcat aaacggttcg tcgatttcga taatgaccca aaaggagaaa gaaggcgatg       120
     tagcatggct gcacaccttc ttccggctaa ccttgctata taaggaactt cgtgacatgt       180
     gtcatcctct tttttttggt tcaacatcca aacgtcatcg agtggacatc aacaacggaa       240
     tttatatacg aagtgaaagt ttagtcattt gaatttattg aaatagagta aattaagaaa       300
     aataaagttc gtttttgtta agttaacgcg tgtgagtcag tgaattactt accgtggccg       360
     cctgccgtct gagaaacctg gaagaaggtc agtgttactt acctgggtct ggaccgtccg       420
     aaacctactc cggcataagc tgaactccgc tgttactcgc tgtgccattc gaca             474
//
ID   BEL-101_AA-I repbase;    DNA;    INV; 2594 BP.
XX
AC   supercont1.335;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-101_AA_;
KW   BEL-101_AA-LTR; BEL-101_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2594
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.335; Positions 1038439 1041032.
XX
CC   'CGCTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..1693
FT                 /product="BEL-101_AA-I_1p"
FT                 /translation="MSDVGEMMITACSACGTTSEVDERMIGCDNCNRWFHT
FT                 RCVGITAASEKECKWFCPATECQQQYSEYLKKVEKQERKKKNKTNKALGVD
FT                 SDRSSIKSARSVSNPGSELEKRLKELEKEQQAKEREIEIEMILLEKRMEME
FT                 RALKEKRMRLENAIRAKQREDERELLEKALSDEKNHMAELKKMRDSFEAKM
FT                 SSVQKEMNQLQMKGKGSQQKEKVLRTPLRNPSKTVPRQLKNKKRKEKLAQY
FT                 RCEEELDDSEGDSEDEEEEEDSNSEEEESEEKSEEDSSEEEEEEQMKKSKN
FT                 AKKEVANGLGRQRSVPTKMQMAARNGVTKKLPVFTGRPEEWPLFIGSYEAS
FT                 TEACGFTDIENLVRLQESLKGQALESVRGQLLFPKCVPKVVSKLRQLYGRP
FT                 EQLLQCHLEKVHQLEPPKADKLATFIPFGTAVEQLCEHLEAAGLKQHLVNP
FT                 LLLQDLVDKLPSSDKREWVRYKKRKRTVTLRTFTNFLSDIVAEACEANVSI
FT                 EFKPEGNSGSSGFEKGRFHERGAVYNHSATEAVINEPATMMSARMRAKCAS
FT                 ARTIA"
XX
SQ   Sequence 2594 BP; 804 A; 480 C; 795 G; 515 T; 0 other;
     ttctcaaaaa taaatatcgg acgtaacctc aaaagcgatg tcggatgttg gagagatgat        60
     gatcacggcc tgcagcgcct gcggaacaac ttccgaagtg gacgaacgga tgattgggtg       120
     cgacaactgc aaccgctggt tccatacgcg gtgtgttggc attacggcgg catcggagaa       180
     ggagtgcaaa tggttctgtc cggccaccga gtgtcagcag cagtacagtg agtacttaaa       240
     gaaagtagag aagcaggaaa ggaagaagaa gaataagacg aataaagcgt taggggttga       300
     ttccgatagg tccagtatta agtcagctag gtcagtcagc aatcccggtt ccgagttgga       360
     aaagcgcttg aaagagttag aaaaggaaca gcaagcgaaa gaaagggaaa tagagattga       420
     aatgatcctg ttagagaagc gaatggagat ggaaagggct ttgaaggaga aaaggatgag       480
     gttggagaac gccatcaggg caaaacagcg agaagatgag agagagcttc tggaaaaggc       540
     tttgtcggat gagaagaacc acatggcgga gttgaagaag atgcgtgact cgtttgaagc       600
     gaaaatgagt agtgtgcaga aagaaatgaa tcagctacaa atgaagggaa aaggaagtca       660
     gcagaaggaa aaggttttga gaacgcctct caggaacccg agcaaaacgg tgccgaggca       720
     gctgaagaat aagaaaagga aagagaagct ggcgcagtat cgttgcgagg aagaattgga       780
     cgatagtgag ggagactccg aggacgaaga agaagaagaa gactccaact cggaggaaga       840
     agaatcagaa gaaaaaagtg aagaagatag ttcggaggaa gaagaagaag agcagatgaa       900
     gaaaagcaag aacgcgaaga aagaggtcgc aaacgggctg gggcggcagc gcagcgtgcc       960
     gacaaagatg cagatggcag cgaggaatgg agtaacgaag aagttaccgg tattcaccgg      1020
     cagaccggag gagtggccgc tgtttatcgg ttcgtacgag gcatccactg aggcgtgcgg      1080
     atttacggac atcgaaaatt tagtgcgtct tcaggaaagc ttgaaaggac aagcgttgga      1140
     aagcgttcga gggcagctac tatttccgaa atgcgttccg aaagtggtta gcaaacttcg      1200
     gcagctatat ggacgtccag agcaactgct tcagtgtcat ctggagaaag tgcaccagct      1260
     agagccgccg aaagcagaca agttggcgac cttcattcct ttcgggacag cggttgagca      1320
     gctctgcgag cacttggagg cagcaggttt aaagcaacat ctagtgaatc cattgttgtt      1380
     acaggacctc gtagataagc tgccgtctag cgataagcgc gaatgggtac gatataagaa      1440
     gagaaaaagg acagttacgc ttcgtacatt caccaatttt ttgtcagata tcgttgccga      1500
     agcctgcgaa gctaacgtgt ccatcgagtt taaaccggaa gggaattcag gtagctccgg      1560
     tttcgagaaa gggaggtttc atgagcgagg tgctgtttac aaccacagcg caacagaggc      1620
     agtcataaat gagccggcaa caatgatgtc agcaagaatg cgtgcaaagt gtgcaagcgc      1680
     acggaccatc gcctgagatt ttgccaggat ttcaggagca tgacaccggt agatcgcgtg      1740
     aacttcgtgc gaaaatggaa gctgtgcggc atgtgcctaa atgatcacgg caatgcagag      1800
     tgcaacttca ggatgcggtg tacgataggc gggtgcatgg aaaggcataa gcctttgctg      1860
     catgtcggat ccggattagt cgtgatgaac gctcacatcc gattgaacag caatattaaa      1920
     taccgaatga ttccagtaaa gctgtcgttt cgtgacaaat ccgtaaccac gttagcgttt      1980
     ttagatgagg gagcatcggt cacaatgatc gagaaggaac tggctgatga gttggaagct      2040
     gagggcattc cgcagaagct cgaaatcagg tggactggag atgttgcccg tgtcgaggag      2100
     gactcgaagc gaataagtct gaagatatcg ggactgggag gagcgcatca gctgctgatg      2160
     aatgaggtgt gcaccgttgg agagttggcg ttgcctgagc aatcgctaga tgctcacgag      2220
     atggcagagc gatacgacca ccttcgggac ataccggtta catcgtataa taaaggccgc      2280
     ccaaggattc ttatcggatt gaataatctt catacgatgg cgccaatcga tgccaggtta      2340
     ggcggatcaa gagaaccgat agcggtcaaa tcaccgttgg gatggacaat atacggtccg      2400
     agtaatatag ttgaatcgtc caatgctcat gttgttggtt agtttgggca agatagccgg      2460
     actttcgtta atgaagcata tgcgaagtag tagtgttctg gcgaaaggta gtcaaccgat      2520
     ataagaggaa aaagtgactg gtaggtaatt ccggagtaac cggtgaacgg ctaccggagt      2580
     tacgggctgg ggag                                                        2594
//
ID   BEL-101_AA-LTR repbase;    DNA;    INV; 504 BP.
XX
AC   supercont1.335;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-101_AA_;
KW   BEL-101_AA-I; BEL-101_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-504
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.335; Positions 1037935 1038438.
XX
SQ   Sequence 504 BP; 177 A; 69 C; 122 G; 136 T; 0 other;
     tgttgacggc gccgagctct accccaagct caggaataag agtgagaagt gagaagggtc        60
     accgagacaa gtgatacgcg cgaccggtca actgtggtgg aaggtcgttg atgatgatgt       120
     gttgtcaaac gaaaagtaca aaacataaac aaaaacaaac tcggaagata gttgatgtgg       180
     agtttgagca aatcaataag tttttctgtg tgaggcaaat taattagttt tctgtgtgaa       240
     tatatcacga aaaagaagta ggtgagatcg gtaattatcc gaaacgattt attcgtaagt       300
     aattataatt tatgtataac aggaaggact tgtaatcgaa atcagtaccg catcgttgta       360
     agagggaaag agagtgaact atttattgta agtttgaaat caattagggt ggactatgta       420
     attaaaataa aatattttca gtttgagctg agcgtaaaac gactgctacg aaaaggaagt       480
     tttcatctcg atcgattccg aaca                                              504
//
ID   BEL-102_AA-I repbase;    DNA;    INV; 6294 BP.
XX
AC   AAGE02018809;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-102_AA_;
KW   BEL-102_AA-LTR; BEL-102_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6294
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018809; Positions    7282   13575.
XX
CC   Positions [5352-5909] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4923..6293
FT                 /product="BEL-102_AA-I_3p"
FT                 /translation="MVQLEAYPNEYELLLKNQDVPLSQQMKIKKSSALYSK
FT                 SPIIGEGNLIRMKRRTGEVDWIPNDMRFPVILPKSSCVTFLLIDWYHRKFK
FT                 HANGETVVNEAMQKYAVSALRVLVRTVSTRCNWCRVYKAKPQTPPMGPLPA
FT                 VRITPYVRPFSFVGLDYFGPLTVKIGRSNAKRWVALFTCLTVRAIHLEVTM
FT                 SLSTESCKLAIRRFIARRGAPSEIYSDQGTNFQGASRELHEQIYAINSSLA
FT                 GTFTNTTTQWKFNPPYAPHMGGAWERLVRSVKAALNATSVSKNPDEETLMT
FT                 VMVEIESMVNTRPLTYMALENSEQEALTPNHFLLLSSSGVNQPSALPVDPK
FT                 TVLRSNWNLVRAMLDRFWARWIQEYLPVISKQTKWFDEIRTLRVGDLVIVV
FT                 QNDIRTRGKVIRVYPGKDGRVRKADVQTSTGIIQRPVTLLAVLNVQVPGNG
FT                 IAEGTSCNTGGG"
FT   CDS           join(337..3225,3229..4212)
FT                 /product="BEL-102_AA-I_1p"
FT                 /translation="MQRLAEEKELRARLLVEKEKQDKDMHDMAMRLEKERR
FT                 EKAISDLMTLEKEFIDKKYQLLQARLEEDDDGISHRSHRSVRHGVDKVQEW
FT                 MNAQPAVTLSSNSGGVGPTGLTSTASNVFHPPSSSTVNKNACSQPAGIAEE
FT                 ISCATSFGPTFKDLISPVTTSYPGLPVETLTSTPSNVPSVPLQQSTPRSSA
FT                 ANVLGTVSLLPTSIHPSASMPGTNTLHRSFYPNTTTISVSNRPNVVENVSH
FT                 ALGGQGNVGTVIGSIYNRIPWASQPGGEMPVSRVSVPAPINPSWLEGLPAR
FT                 PSVPASGPMCSSFPQSGYPSAPPGIPSITQSSLSLPSMVSSGVGGGIYNLS
FT                 SQQYPGISVTSYQTPIFSVPQQPSIPMQQSFGPNSQQLAARHVVPKELPSF
FT                 AGNPAEWPLFWSSYDTSTQMCGYTDAENLMRLQRSLKGEARKAVSCFLLHL
FT                 SNVPEVMNTLHSLYGRPEAIIHTLLNEVRATPPPKPEKLETLINFGLAVRN
FT                 LCVHLVSTRQDMHLSNPILLQELVEKLPANIKLDWALYKQRVLVADLRAFA
FT                 DYMNVLVTAASSVTTIVEPAFQKAERQKVKTKAFVNPHSTVDSRPPWQSKE
FT                 VPSSDVSKPDIKEDRPCVVCKTSGHKPKDCDMFKQKDLADRWKIASEVHLC
FT                 KRCLYPHGRWPCKASTCGVDGCQQRHHRLLHPGEPQVGGNRTAMNYNTGTV
FT                 AVHKQLRSQILFCIIPVLLHANGKSIRTFAFLDSGSDSTLIENSIVKQLGI
FT                 VGQPAPLCIQWTNGVKRTEDMAQQVQLLISGLDSTKRFALNDVHTVRSLDL
FT                 PRQSLKFDVLQRDFPHLRGLPVKSYDDASPGILIGLDNTKVKNTLKLREGK
FT                 PDEPVAAKTRIGWVVFGRNRGSGENSSHRLLHLCKQSSDEVLHDLVKNFFS
FT                 IEGTGVSSTNALDSADVRRARNILEETTERTSSGRFQTGLLWKYDHFQFPD
FT                 SRRTAERRVCLEKRLQKSPELYDNVKQQIAEYQRKGYAHIATDKELEETDP
FT                 KRVWYLPLGVVIHPKKPGKVRVVWDAASTVQGVSLNSVLLKGPDLLTSLPV
FT                 VLSRFRQRQVAISGDIREMFHQVLIRPEDRHAQRFLWRDSPLLPMQVFVMN
FT                 VATFGSCCSPCSLQYIKNLNADEQADEFPKAAEAVKKSHYVDDYLDSVDTV
FT                 DEAIQLAEKVKAIHAKEGFEIRHWMSNSTEVIQRIGECSEDTDKIFVMDKC
FT                 SSIERVLGMTWQPKEDVFSFSLQLRENLQSLITDDAVPTKRKALSLVMSVF
FT                 DPLGLVAVILVHGKVLLQDIWRSTYICGRQ"
XX
SQ   Sequence 6294 BP; 1774 A; 1450 C; 1576 G; 1494 T; 0 other;
     aacttcaaga atataaacat tctaacctct catctgccga cggtcgggat aagctccaga        60
     aaatatgacg acattaccgt ctgagaccgt gaccaatgtc ggagaggcga cagagcatag       120
     aaattgccgc gtttgcaaca gacggagtag accgcacagc cagatggtcc agtgcaacgg       180
     ctgtaggcac tggtatcatt tcagatgcgc cgcggttggg gatagtattg ccaacgaggg       240
     cagagtatat ctttgcggtt tctgttcaac atcacctggc tcgtaatagc acaatcgaca       300
     acggcaagcg cacgagaggc caagttgagg ctcgaaatgc aacgcctagc cgaagagaag       360
     gagctacggg ctagattgct ggtggagaag gaaaagcaag ataaggacat gcacgatatg       420
     gcgatgcgac tggaaaaaga acgaagagag aaagcgattt ctgacttgat gacgttagaa       480
     aaggagttta tcgacaaaaa ataccaactg ctgcaagccc gattagaaga agacgacgat       540
     ggaataagcc acagaagtca ccgtagtgtc cgccatggag tggacaaggt ccaagagtgg       600
     atgaatgcac agccagccgt gaccctgagt tccaattctg gaggagtagg ccccactgga       660
     ctcacatcta cagcatccaa cgtatttcat ccaccctcat catcaacggt aaacaaaaac       720
     gcttgcagtc aacctgcggg aattgctgaa gaaatctcct gcgctacgtc ctttggtcca       780
     acattcaagg acctaatttc gcctgtgacg acgtcctacc cagggctgcc agtggaaacg       840
     ctaacatcaa ctccaagcaa cgtcccatca gttccattgc aacaatccac accgaggagt       900
     tcagcagcaa atgtgctagg gaccgtttcg ttattgccta cctcgataca tccatcagca       960
     agcatgccag gtacaaacac tctccaccgt tcgttttatc caaacacgac aacaatatca      1020
     gtaagtaatc gaccgaatgt tgttgaaaat gtaagccatg ctttgggcgg acagggtaat      1080
     gttggaacag ttatagggtc tatttacaat cgaataccgt gggcaagtca acctggcggt      1140
     gaaatgcctg ttagtagagt tagtgttccc gcaccgatca acccttcgtg gttagaaggt      1200
     ttaccggcgc gcccctctgt accggcaagc ggccctatgt gctcttcgtt tccgcaaagt      1260
     ggttatccct cagcaccacc aggtattccg agtattacgc agagtagcct ttctctaccg      1320
     tccatggtat catctggtgt gggtgggggg atatataact tgtcctctca acaatatccc      1380
     ggcataagtg taaccagtta tcaaactcca attttctcgg tgccgcaaca acccagcata      1440
     ccaatgcagc agtcctttgg ccctaattct cagcaattgg ccgctcgtca tgtagtgcca      1500
     aaggaactcc cttcgttcgc gggaaatcca gcagagtggc ctctcttttg gagcagttat      1560
     gatacatcta cacaaatgtg cggatacacc gatgcggaaa acttgatgcg gctacagcgt      1620
     agtctgaagg gcgaggctag gaaagccgta agctgcttcc tgctgcatct atcgaatgtg      1680
     cctgaagtga tgaacacatt gcattcgtta tatggtcgtc ccgaggctat aatacacaca      1740
     ctactaaacg aagtacgagc cactccaccg ccaaaaccag agaagctgga gaccctgatc      1800
     aattttggac tggcagttag gaacctttgt gtgcacctcg tgagtacaag acaagatatg      1860
     catttatcga atccgattct attgcaagag cttgttgaaa aattacctgc aaacatcaag      1920
     ctggattggg cgctctacaa acaacgtgtc ctggtagcag atcttcgcgc tttcgctgac      1980
     tacatgaacg tgttggtcac agcggctagc agcgtcacga ccatcgttga acctgcgttt      2040
     caaaaggctg aacgacaaaa ggtgaagaca aaggcatttg taaatcccca ttcgacggta      2100
     gattcacgac cgccatggca gagtaaagaa gtaccaagct cagatgtgag caaaccggac      2160
     atcaaagagg atcgaccatg tgtagtgtgc aaaacatctg ggcacaagcc gaaggattgt      2220
     gatatgttca agcaaaaaga tctagctgat cgttggaaga tcgcatctga agttcacctt      2280
     tgcaagaggt gtttgtatcc acatggacgt tggccatgca aagcttcaac atgtggtgta      2340
     gacggatgtc agcagcgcca tcatcgcctt cttcatcctg gcgaaccaca agtagggggt      2400
     aatagaactg cgatgaacta caacacgggc acagtagctg ttcataaaca attacgtagt      2460
     cagatactgt tctgcataat tcctgttttg ttacacgcta atgggaaatc aattcgaacc      2520
     ttcgcctttt tggatagcgg ttcagattcc accctgatcg agaactcgat agtgaagcag      2580
     ctaggcatag tgggccaacc ggctccgctg tgcatacaat ggactaatgg agtgaagcgt      2640
     actgaagata tggcgcaaca agttcaactc ttgatttctg gattggattc gacgaagcgt      2700
     ttcgcactga atgatgtaca caccgtaagg agtctagatt tgcctcgaca atccttgaaa      2760
     ttcgacgtgc tccagagaga ttttcctcac cttcgcggac ttcccgtgaa gagctatgac      2820
     gacgcatccc ctgggatttt gattgggcta gataacacga aggttaaaaa cactctaaag      2880
     cttagagaag gtaaacctga tgagccagta gcagcaaaga cacggattgg ttgggttgta      2940
     ttcggacgta accgaggctc aggagaaaat tcttctcatc gacttcttca cttgtgtaaa      3000
     cagtccagtg atgaggtgct tcacgattta gtgaaaaatt tcttcagtat tgagggcacg      3060
     ggggtatcat caacaaacgc tcttgattct gccgacgtcc ggcgcgctcg aaacatcctt      3120
     gaagaaacta cagaacgcac ctctagcggt cgattccaga cggggctctt atggaaatat      3180
     gaccattttc aattcccaga cagtagacga acagcggagc gccgttaagt ctgtctagaa      3240
     aagcggctgc agaaatcacc agagttgtat gataacgtga agcaacaaat tgctgaatat      3300
     cagcgcaaag gttatgcgca catagcaacg gacaaggaac tagaagaaac agacccaaag      3360
     cgagtttggt atttgccttt aggggtcgtc atccacccaa agaaaccggg aaaggtgcgt      3420
     gtagtctggg atgcggcctc aacggtacaa ggtgtctcac tgaattctgt tctgctgaaa      3480
     ggacctgacc tactcacctc attacccgtg gtgctaagtc gattccgtca gagacaagtg      3540
     gccatcagtg gagatatacg ggagatgttc caccaggttt tgatacgacc ggaagatcgt      3600
     catgcacagc gtttcctctg gcgggacagc ccattgctcc cgatgcaagt attcgtcatg      3660
     aatgtagcta cttttggatc ttgttgctct ccgtgttctt tgcaatacat taaaaatttg      3720
     aacgcggacg agcaggcaga cgagtttcca aaggcagccg aggcggtgaa gaaaagccat      3780
     tacgtcgatg attatttgga tagcgtggat acggttgacg aagcaataca gttggcggaa      3840
     aaagtaaaag cgatacacgc taaggaaggg ttcgaaattc ggcactggat gtcaaattca      3900
     actgaggtaa tccagcgaat tggcgaatgt agcgaggaca cagacaaaat attcgtgatg      3960
     gacaagtgca gcagtataga acgtgttttg ggaatgacgt ggcagccaaa ggaggatgtt      4020
     ttctcgttct ctctccagtt gcgtgaaaat cttcaatctc tcataaccga cgatgcagta      4080
     ccgacgaaac gaaaagcttt aagtctggtg atgagcgtct tcgacccgtt gggattggtg      4140
     gcagtgatcc tcgttcacgg aaaggtgttg cttcaggaca tatggcgctc tacatatatt      4200
     tgtggacgcc agtgaaaccg cttatgcagc ctgcgcgtac ttccgtttag tggatcgtgg      4260
     ggtcactcga tgttgtctag tgtcggcgaa atcaaaagtc gctccactca aaccgatgtc      4320
     tattccacga cttgaactcc aagctgcggt tatgggagca cgccttatga aaacagtcgt      4380
     taccaatcac acgcttaaaa tttgtcgcaa agtgctcgct taaaatttgt cgctggagcg      4440
     actccacaac agtgctttcg tggctgagat cagatccacg gcgccacacg cagttcgtgg      4500
     gattcaggat cggggagatt ttggaagcta ctgacatcga agattggaga tgggtcccaa      4560
     caaaatgtaa tgtcgctgac gaagctacca aatggaacgc agggcctaat attgagccaa      4620
     acggtcgctg gtttaaagga cccaattttc tatataaaga cgaagactgc tggcctcgac      4680
     gtgaacctcc gttgcaagag tcttcagaag aattacgatc ggtgcacgta caaacccatg      4740
     tcgtgatcaa acaggtgatc gagttcaagc gtatttcaaa atgggaacgt gtaatacgta      4800
     ctgtcgcttt tgttcgtcgt ttctacgaga actgtcagaa gaagacgaaa ggtgaacgtt      4860
     catatctcac actatctttg agtcgcgaag aattgaagaa tgcggagttc actgtgttga      4920
     gaatggtgca actggaagct tatccgaacg aatatgagct attactaaag aaccaagatg      4980
     tcccactgag tcaacagatg aagatcaaga agagtagtgc tctttatagt aagtctccga      5040
     taattggtga gggtaatctt atccgaatga aacggcgtac tggagaagtt gactggattc      5100
     ccaatgacat gcgatttcca gtgatcctac cgaaatcgag ctgcgtgacc tttctactaa      5160
     tcgactggta tcatcgtaaa ttcaagcatg ccaacggaga aactgtagtg aacgaggcta      5220
     tgcaaaagta cgctgtctcc gcacttagag ttctagtaag aactgtaagc acacgctgca      5280
     actggtgccg agtgtataag gcgaaacctc aaacaccacc gatgggcccc ttaccagctg      5340
     tacgcattac tccttacgtc cgtccatttt cctttgttgg gttggactac tttggtccgc      5400
     taactgtgaa gattggtcgc agcaatgcaa aacgatgggt tgcactcttt acgtgcttga      5460
     cggttcgtgc tatccatttg gaagtaacca tgagcctctc cactgagtcc tgcaaattgg      5520
     caattcggag gttcatagcg cgtagaggag ctccgtcaga aatttattcc gaccagggca      5580
     caaactttca aggagcgagt cgagaacttc atgaacagat ctacgctatt aatagctctc      5640
     tggctggcac tttcactaat actacgacac agtggaagtt caaccctccc tatgcaccgc      5700
     atatgggagg agcttgggaa aggctcgtgc gatctgtaaa ggcggctctg aacgctacat      5760
     cagtgagcaa aaatccggac gaagaaactt tgatgacggt aatggtggag atagagagta      5820
     tggtgaatac tcgcccttta acctacatgg cgctggagaa ttcggagcag gaggcgctaa      5880
     ctccgaatca ttttttactc ttgagttctt ccggtgtgaa tcaaccatca gcgctcccag      5940
     tagacccgaa aacggtgctg cgttcaaact ggaacttagt ccgtgcaatg ttagatcggt      6000
     tttgggcacg atggatccag gaatacctac ccgtaatctc caagcaaacc aaatggtttg      6060
     atgaaatcag aaccctgcga gtcggtgatc tagtaatcgt tgtgcagaac gacatccgga      6120
     caagagggaa ggtgatccga gtttatcctg ggaaagatgg aagagtacgg aaggcggatg      6180
     ttcaaacctc taccggcata attcaacggc cagtgaccct gctagctgtt ctgaacgtac      6240
     aagtgccagg taatggtata gcagaaggaa cttcgtgcaa tacgggtggg ggca            6294
//
ID   BEL-102_AA-LTR repbase;    DNA;    INV; 482 BP.
XX
AC   AAGE02018809;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-102_AA_;
KW   BEL-102_AA-I; BEL-102_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-482
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018809; Positions    6800    7281.
XX
SQ   Sequence 482 BP; 197 A; 79 C; 75 G; 131 T; 0 other;
     tgttggcaac acggaatcag ccttttcaac agggatcaac actggtgaag tgacagacaa        60
     ctacaatgac acaaggagga tgaaatgaaa cgtcaaaaaa ggtacacaaa ctgaagacat       120
     caaacattgc acgtgaagaa gctaattgaa gtaaaaatta taaagttaat agattattat       180
     ttgaattcga ttacatttaa caaattatta cacgaaattg taagtaaaat aaatgaattt       240
     gacacaacac atatgtaaca cttaaaatat gatttatagc ttaatagtaa tctacacaca       300
     attgttactg tacgacggag aacatttgca cacgtgaaag acttatattg taagtaaaca       360
     aactattaaa tctaatttaa tcgctaatga aatgctaata tattttagct tgaagcttac       420
     tcaactaccc acataaccga gtttgctata ggaaagtccg aatcgtatcc gctccagtaa       480
     ca                                                                      482
//
ID   BEL-103_AA-I repbase;    DNA;    INV; 7258 BP.
XX
AC   supercont1.294;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-103_AA_;
KW   BEL-103_AA-LTR; BEL-103_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.294; Positions  168511  175768.
XX
CC   Positions [5200-5790] - Integrase core
CC   'AACTG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           864..2651
FT                 /product="BEL-103_AA-I_2p"
FT                 /translation="MNSDQVKMASELKELKRQIRQLQNTFDGVRRFVGRFK
FT                 KEKHYAHIDTRLEMLEAAMTKFYAIRRKIEEVMEEIDESSVAESKESPEER
FT                 TARLEILSERRCQESSDVIQETEDVYCELRSLLSSLKGEPTSTTSSANPEA
FT                 AAQHVVKPTSTVKLPELRLANFGGRLLEWVTFRDQFQSLIHRNYQLSDMDK
FT                 FSYLRSSLVGEALQEVGALEMTSANYSIAWDLLQKRYENKKLIVKAHLDAL
FT                 FAVEPMKRESYEALNHLISEYDRNLQMMGKIGEETANWSTILVHMVCCRLD
FT                 PATLRHWESHHCSKDVPKYDDLMEFLRNQCSVLQSIAPEKSTDTDVRKART
FT                 SVSHPSTQFSNNRCHFCGEAQHSAFRCQRFLKMKVPERYEKVKKCGLCLNC
FT                 FSPSHLVRLCTKGVCRHCQRKHHTLLHLGSSEGGAAATATQIGSSVPQEQT
FT                 RTQRANNHQTQPHAQNQTAPSQNTGPNTRSFPIASTSTHPLPTTDRTPSQH
FT                 TNSLPVSIHTPSRQVLLSTALVRITDQYGNVQLARALLDSCSEYCFITRSL
FT                 CQKLKLGGSPNHLSIVGIGGSSTKSTRMVNATVMPRSLKISPYPIARFA"
FT   CDS           3010..6159
FT                 /product="BEL-103_AA-I_1p"
FT                 /translation="MCKEIFERTTTRDETGRFVVTLPKKESVIQKLGDSKA
FT                 NAFKRFYGLERRFAANTALKEAYFEFINEYRSMGHMEEVSEEEEPAYFLPH
FT                 HAVLKPDSTTTKLRVVFDASCRTSTGVSLNDGLMCILWRPSPDDSIKAYKL
FT                 TTVTYGTSSAPYLATKCLQRLGSVGEATHPAAAKVIKKDFYVDDALTGTDD
FT                 LEEGKALVSELIDLMSSAGFILRKWSSNSAELLGNVPIDLRDERSSFELDS
FT                 STSAVNTLGLIWEPAADIFRFTVPKLELDTPITKRIVLSESAKIFDPLGLI
FT                 GPVVVQAKIFLQTLWKQKCNWDDLLPDELQSSWIEFRRNLLALDTLTVPRW
FT                 VSFAKDLVTVELHGFSDASNVAYGACFYLRCITVDGTITAKLVTAKSRVAP
FT                 LEDLKRKKKVLSTPRLELSAALLLSHLYEKVCSSIKIPFQSFFWTDSTIVK
FT                 YWLASPPSRWQVFVANRVSEIQHITSNGVWNHVAGADNPADIISRGMIPAQ
FT                 LKYETMWFEGPLWLRQDRSMWPSNSSVTPDVEHSLLEERSSVALPARAKPP
FT                 NELFLLRSSFTELVRIVAYIRRFLHNATPNNRTHKRSGQIKLQELNESTEA
FT                 LVRLAQADSFPEEVAALSRAREVKSSSKILMLHPILVDETLRVGGRLANAP
FT                 ISESRKHPMILHHRHPFTKLVLRHYHLAHFHAGQQLLIASVREKFWPTNAR
FT                 DLARTVCHECVTCFRNKPTVHEQLMADLPSVRVNPAAVFLKVGVDLCGPFY
FT                 TKYPVRRSAAVKCFVAIFVCLATKAVHMEVVADLSTQAFLAAFKRFVAVRG
FT                 KPQVVMCDNATNFVGANRELEELRLQFLDQQFQHTVVRTVEDEGIQFEFIP
FT                 ARSPNFGGLWEAAVKSFKGHFRKIVGNQQLSYDELHTIVQQVAAILNSRPL
FT                 TPLSNDPNDYVALTPGHFLVGRPLTAVPEPDLQEIPENRLSVWQRSQDFVQ
FT                 RLWRKWKTHYLSDLHNRTKWTRKRDNIKVGTMVLVKEDNLPPQRWKLGRVA
FT                 EIYTGSDGNVRVVEVRTKDGLFKRAISKICVLPIKDNAPIEEEY"
XX
SQ   Sequence 7258 BP; 1924 A; 1767 C; 1762 G; 1805 T; 0 other;
     ttttggtcct tcgagccgga tttacgaccg gtggaccgtt ggatttggag aaatccgtga        60
     agatcggaca gtgaaccgtg tcgaacgaca atagtgtggt gggactatag tggcgtcggt       120
     accggccata gtgtatagtg gtttggcttg gcgtgggtac ccgccatcga caaaagccac       180
     agtgaagaaa ggccatagtg agtgaaattg aaattggcgc ggcttgagga gccgccatcg       240
     aagaaagcct gaagaaccga aaccggccat cgtaattcag cggtcccttt cggcgcggga       300
     aggagcagtg accggtcgat gaccctgcat caagtggata gcatcagcca atctccagca       360
     accaaggatc gcggaacgag aatcaaccag gcaaagggaa gtagcgtgag tagttgagat       420
     ctgtggtggc atcatgcatg agatgcccac cgaaatattt gtgggtcgtt ttgaataaaa       480
     cgaatgtgag atgaaattca aatcaatcat ctttcaattg catgcgatca ttttcctgga       540
     atgtggttct tgtgtcctct tgattgacgg tcttggtttc tgctggcgtt tttctggctt       600
     gttgttcgct cggttggatc ccctgctgca gtcaatttcg ttcgaattta tctctgtcac       660
     ccgtgggacg tcgaggaatc gcgaatcggt gaatcacggc aatttggtgc tattaatgag       720
     tggaagtgac taaatgtgta cgctttgaag ctattgatag gttgaatcaa tcgctctgtg       780
     actttttcga actttagtgc gtgattggtt caatttaatc tttgcaattt gaactgatat       840
     taagtgagag ttgacaattg acgatgaaca gtgatcaagt gaaaatggcc agtgaattaa       900
     aagagctgaa acgacaaata cgtcagctgc agaatacctt tgacggtgtt aggcgtttcg       960
     tcggtaggtt caagaaggag aaacattatg cgcatatcga taccaggttg gagatgttgg      1020
     aggcggccat gacgaaattc tatgcgatcc gtagaaaaat cgaagaggtg atggaagaaa      1080
     tcgatgaatc aagcgttgcg gaatccaagg aaagccccga ggaaagaacc gcccggttag      1140
     agatactgtc ggagcggcgt tgtcaagaat cttcagatgt gattcaggaa actgaggacg      1200
     tctattgcga gttgcgatcc ttgttgtcat ctctcaaggg cgaaccaaca tctacaacat      1260
     catctgcgaa ccctgaagct gctgcgcaac atgttgttaa gccaacgtca actgtgaagc      1320
     tgccagaact tcgattggct aattttggag gacgcctact agaatgggtt acgtttcgtg      1380
     atcagtttca gagcttgatc catcgcaact atcagttgtc ggatatggat aaattcagtt      1440
     atcttcggtc atctttagtg ggtgaagcat tgcaggaagt tggggcacta gagatgacgt      1500
     cagcgaatta ttcgattgcc tgggatctac tacagaagcg ctacgagaac aaaaagctta      1560
     ttgtcaaggc acatctggat gctctcttcg ctgtagaacc catgaagcgt gaaagctatg      1620
     aagcactgaa tcatctcatc agcgaatacg accgcaacct tcagatgatg ggaaagattg      1680
     gagaggagac tgccaattgg agcacgatat tggtacatat ggtgtgttgc agacttgatc      1740
     ctgctacact tcgccactgg gaatcgcacc attgttccaa agatgtcccc aagtacgacg      1800
     atttgatgga atttctgcgg aaccaatgct cagttctcca gtctatcgct ccagaaaaat      1860
     ccaccgacac tgacgtgagg aaggcgagga cttctgtgag tcatccgtcg acacagtttt      1920
     ccaacaatcg atgtcacttc tgtggtgaag ctcagcattc agcgtttagg tgccagcgat      1980
     tcctgaaaat gaaggtgcct gaacgttacg agaaggttaa gaaatgtgga ttgtgtttga      2040
     actgcttttc tccatcgcat cttgttcggc tctgcacaaa gggtgtctgc cggcactgtc      2100
     agcggaaaca tcacactctg ctgcatctag gatcttcaga aggtggagca gctgctacag      2160
     caacgcagat cggttcctcc gtcccacaag aacagactcg aacacaaaga gcgaataacc      2220
     atcaaacaca gccacacgcc caaaaccaaa cagcaccaag tcaaaacact ggaccaaaca      2280
     caagatcatt cccaatcgca agcacaagca cacacccact acccaccaca gatcgtactc      2340
     cctctcaaca cacaaactca ctgcctgtca gcattcatac gccatctcgt caagtactgt      2400
     tgtccaccgc cttggtgcgt ataacggatc agtatgggaa cgtacagctt gccagagcac      2460
     tgctagactc gtgctccgaa tactgcttca ttactcgaag cttgtgccaa aagctcaagc      2520
     tgggaggttc tcccaaccat ttgtccatcg tcggtattgg aggatcgtct acgaaatcaa      2580
     caagaatggt gaacgcaacc gttatgccac ggtcactcaa aatatcgcct tatccaattg      2640
     cacgttttgc ctaagctgac atcagatttg ccgaccgaat ttgtgaatgt acaacaacta      2700
     gcgattccag agcatcttac tctagcggat cccacatttt ttgagccggg atcgatagat      2760
     ctgatcatcg gcgccgaata ttattacgat ttgctggcag aggggaaggt taagctggta      2820
     gacgatggac ccactctgca agaaactgtt ttcggctggg tcgtctctgg acgcgtacct      2880
     ggatcttctt cggttgttca acgatccatt tcgtatcctt gtgttgcacc cgatctgaac      2940
     gacctgctta ccaagttttg ggaactcgaa tcctgccact ctgggggaac gttgtcagta      3000
     gaagagtcaa tgtgtaaaga aatcttcgag cgaactacca cgcgtgacga aactggtaga      3060
     ttcgtagtta cgctaccgaa aaaagaatct gtcatccaga aactggggga ttccaaggcc      3120
     aacgctttca aacgattcta tggactggag cgtcggtttg cagcaaacac cgccttgaaa      3180
     gaggcatatt tcgagttcat caacgaatat agatcgatgg gccatatgga agaagtgtca      3240
     gaagaagagg agcctgccta ctttttgcca catcacgcag tgctaaagcc tgatagcacc      3300
     acgacgaaac ttcgggtcgt ttttgacgcc tcgtgccgca cgtcgacagg cgtgtctttg      3360
     aacgatggat tgatgtgcat cctttggaga ccatcgcccg acgactccat taaggcgtac      3420
     aagttaacca cggttaccta cggaactagt tctgcaccct atctcgcaac aaagtgcctt      3480
     caacgtttag gaagtgtagg tgaagcaacg catcctgctg cagcgaaagt gatcaagaaa      3540
     gacttttacg tagatgatgc gttgacaggg actgacgatt tggaagaagg aaaggcttta      3600
     gtatcggagc tgatcgacct gatgagctca gctggtttca tcttgaggaa atggagttcc      3660
     aacagcgctg aactacttgg taatgttccg atagatcttc gagacgagcg tagttccttt      3720
     gagttggact cgtcaacatc tgccgtgaat acccttggtt tgatttggga accagctgct      3780
     gatatctttc gtttcactgt tcccaagctg gagttggata cacctatcac caaaagaatc      3840
     gtcttatccg aatcggcaaa gattttcgat ccgttgggac taattggtcc ggtagtcgta      3900
     caggccaaaa tctttcttca aacgctatgg aagcagaaat gcaactggga cgatttatta      3960
     ccggacgagt tacagagctc ttggatcgaa tttcggcgaa atctcctggc cttagacact      4020
     ctcactgtcc ctcgctgggt ctctttcgcc aaggatctag tcacagtaga gttacacgga      4080
     ttttcggacg cttctaacgt tgcctatggt gcctgctttt atcttcgctg tattacggtt      4140
     gacggtacca taactgccaa gctcgtcact gccaaatcca gagtcgcgcc tctggaggat      4200
     ttgaagcgaa agaaaaaggt tttatcaacg cctcggctcg aactttccgc agcgctcttg      4260
     ttgagccact tgtatgaaaa ggtatgcagc agtatcaaaa ttccatttca atcgttcttt      4320
     tggaccgact ccacaatcgt gaagtactgg ttagcttctc caccatcccg ttggcaagtg      4380
     ttcgtcgcaa accgtgtctc ggaaattcag catataacca gcaacggcgt ttggaaccat      4440
     gtggccggag cggacaatcc agcggacata atatcgcgcg gaatgatacc cgcacagctg      4500
     aaatacgaaa ctatgtggtt tgaaggtcca ctgtggctac gacaagaccg ctcaatgtgg      4560
     cctagcaatt cgtctgtaac accggacgtt gagcattcac ttctcgagga gcgatcttcg      4620
     gttgcgctac cagctcgcgc aaagcctcca aacgaactat ttctcttgcg ttcatcgttc      4680
     accgaactcg tgcgaatcgt agcatacatt cgtagattcc tccataacgc aactccgaac      4740
     aaccgcaccc acaagcgttc gggacagata aagcttcaag agctgaatga gtcaaccgaa      4800
     gctctagttc ggctagctca agcggacagt tttcccgagg aagttgcagc actttctcgt      4860
     gcgcgggagg tgaagtcttc gtctaagatt ctcatgctac atccaatcct cgttgatgaa      4920
     acgcttcgcg ttggcggccg gcttgctaac gcgccaattt cggaaagtcg caagcaccca      4980
     atgattttac atcaccgtca tccgttcacc aaactcgttt tgcgacacta tcacctcgca      5040
     cacttccatg ctggtcaaca gcttctaata gcctcggtca gagagaagtt ctggccaacc      5100
     aatgcacgtg atttggcccg cactgtgtgt cacgagtgtg taacgtgctt ccgtaacaag      5160
     cctaccgttc acgaacaact aatggccgat ctgccgtcgg ttcgagtaaa ccctgcagcc      5220
     gtatttttga aggttggtgt agatctttgt ggaccattct acaccaaata tccagtccgg      5280
     cgtagcgcag cggtgaaatg ctttgtagcg atttttgttt gtctggcaac gaaggccgta      5340
     cacatggaag ttgtggcgga tctgtcgacc caagccttct tggctgcttt caaacgattt      5400
     gtcgcagtta gaggaaaacc acaggtggta atgtgcgaca atgccaccaa ttttgtaggc      5460
     gccaacagag aattggaaga gttgcgtctc cagtttctcg atcaacaatt ccaacacact      5520
     gtagttcgta cagttgaaga tgaaggcatc cagttcgagt tcataccggc tcgttctcca      5580
     aacttcggtg gactctggga ggcggcggtt aagtcgttta aaggtcattt tcgcaagatc      5640
     gttggaaatc agcaactcag ctacgatgag ctacatacaa ttgttcagca ggtggccgca      5700
     atattgaatt cgcgcccact aaccccgctt agcaacgacc caaacgatta tgttgcttta      5760
     accccaggac acttcctcgt tggaagaccg ttgactgcgg ttcctgaacc tgatcttcaa      5820
     gagatacccg aaaatcgttt gtcagtctgg cagcgatcgc aagattttgt gcaaagactc      5880
     tggcggaaat ggaaaaccca ttatctgtcg gatttgcaca atagaaccaa atggactagg      5940
     aagcgcgata acatcaaggt tggcacaatg gtgttggtga aggaggacaa cctgcctccg      6000
     caaaggtgga aactggggcg agtagcagaa atttacaccg ggtcggacgg aaacgtccga      6060
     gtggtagagg tccgcaccaa ggacgggctc ttcaaacgag ccatctccaa aatctgcgtt      6120
     cttccaatca aggataacgc gcccatagaa gaagagtact agactcttcc atcgatggtg      6180
     cttcggcacc gcgggggtct tcacattgag ggcctccgct ttccagttaa gtatgtgttt      6240
     cattgaataa ttcaaaaagc tcaagaaatg ttcatccccc atagccaccc gtcggtccct      6300
     tcggggacgc ccgtcatcag aagacatcgc gctgctatct ggtccatccg tcaatcacgc      6360
     tttagttcac catgtagtcg ttgagcatgc cctatccatg atgtccatat cgtccgtcct      6420
     gctattgaaa tttcgttgtg acgtcaatct atatcaccaa tgcattaacc actctcactg      6480
     aaaggtcatt agcgcatcta ccatcatcaa ccatccagct gaggaattgg taccatatct      6540
     cagcatcgct gcaaacgcca tcgacaagtc gtccacaggg cctgatcaac ccgatcggag      6600
     ggctaatgtc ttcgtcggtg cagcatcgtt catcgcaaca tagaaccgta gtagaccttt      6660
     tcaatccgtt tggagcgacg taccgaccgt cgtcatcggt gcctggggta cctgcggagg      6720
     ccaggaggcc tccgctccag gcaagttctg ttttagttca taaattcaag gtaaaaagca      6780
     ccagttcatt tctagcgtcg attgatgtca gcataccaca ccggaggacg taggacagca      6840
     tcagcgaagc cacccactag aagagaggtt ccattcgacc ccaacaaggg cacggacagc      6900
     gtcgaaacaa tccatcaaca tcaagtcgtc atcccagtcc aagcagaatc caatatcgtc      6960
     gtcgtcatca ccattgtagt ccatctcaag cccctatcag caatcatcgt ctacatctac      7020
     agtccttcga gcgtcgagca atatcagcta tccagcgatc aacaagcagg tcatcgctct      7080
     ccggctgaac tcgtcggaca gaatagtgct agtatataag aacatctaag tcaaaacaaa      7140
     taatgcaaaa tactaggtgg cagtagcatt cgaagtcggt taggtagagt tacagagtcg      7200
     gtcgaaatag tatgcccagg atttgattga aatccctatg ctttcaaggt ggccggta        7258
//
ID   BEL-103_AA-LTR repbase;    DNA;    INV; 405 BP.
XX
AC   supercont1.294;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-103_AA_;
KW   BEL-103_AA-I; BEL-103_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-405
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.294; Positions  168106  168510.
XX
SQ   Sequence 405 BP; 115 A; 107 C; 77 G; 106 T; 0 other;
     tgttcagaat tagatcaaac agcaatactg gcaacccaaa catgttccac acgatcggag        60
     ctatatcact ctcgctcatc cttatcatta ttatcattac catctcacat ttcctatcag       120
     cataggtagc tcatataccg gtgagaccga atcgaccgcg atcggttata ttcgcgcgta       180
     tactcactac actgacccta gagtatcgtt ctatatactc agggcagtca gttagctctc       240
     gatcgcgcgc gcatgagcat cgcaataaag ttcacttcaa accgaaccta acgagtctca       300
     ataaagtttt tcgatcacca agtttaacgc gtgtgtagtt ctgtgcaaga aacgaattcc       360
     gcagtgtccg aactagggtc gtctccaacg gtaccggtag gaaca                       405
//
ID   BEL-104_AA-I repbase;    DNA;    INV; 6772 BP.
XX
AC   supercont1.298;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-104_AA_;
KW   BEL-104_AA-LTR; BEL-104_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6772
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.298; Positions 1135927 1129156.
XX
CC   Positions [5497-6081] - Integrase core
CC   'GTATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1105..6441
FT                 /product="BEL-104_AA-I_1p"
FT                 /translation="MPVKEEKQLAVSMHQRKCLIKMLDALERFIRDYDHDR
FT                 DSYQLCVRIDSLDKLNTDFADCQSAVERYDDPEALDVHIDERVVFEQRYCK
FT                 AKGFLLAKRNADANQSALNESVLAPQHHPNFHLRLPKIEMPKFNGDFSRWI
FT                 SFRDTFTSMVHVNGGIPAVAKLQYLLQSLEGSAKKPFESVDIEADNYATTW
FT                 DALLKRYDNRKYLKKQLFKALYDLPAIKQECATRLHGLVDDYQRHVRALSK
FT                 LGEPVDHWDLPLIYLLCYKLDPATLRAWEEKTSQKDDVKYDELVEFLYQRV
FT                 RILNSVGSESHHPASSKVAGYPQKSFKQKVSANAATASPPTYPCPLSCSDS
FT                 HSLRTCPVFLGKTVSQRRELVSQKRLCWNCLSFGHQSKKCGSKYSCRTCRE
FT                 KHHSLLHDTAPVKVSATPAIQANPSELSVSSKLAVSAAPLVQQPLPSTSQQ
FT                 ASGSRQVSMAVQTTCTMTLLETVVLNIVDDHGNTHKARALLDSASMSNFIS
FT                 KPLAKSLYSRRSTVDVSVAGIGSSTQKIRSAITATIESGDRTISMKLQFLV
FT                 LKQPSSELPTTPIDISAWKFPNVKLADPQFSTPGCVDLVIGSETYWELHTG
FT                 RKISLGKGLPWVVETPFGWAVSGPASRSATCIPRFCYLSTADDRLESALRK
FT                 FWDMETIPLAPVRSTEESRCEELYAATTTRNATGRYVVRLPRTEDPEKVLG
FT                 ESRSIADRRFLSLERRLERDPATKDSYNRFMEEYLQLGHMNKIQEPVDDSI
FT                 PHCYIPHHVVFKQSSTTTKVRVVFDASCKTSSGYSLNDTLLVGPVVQQDLY
FT                 SIYLRFRTQIVAVVADVEKMYRQVLHHPEDLPFLRIRHRSSPSDPITTYEL
FT                 QTVTYGTASAPYLATKTLQQIANDQAELYPAAVDPVVEDFYVDDLLSGAPD
FT                 VDSAATLRQQVTAMLGSAGFTLKKWASNVQEVLQDVPPEDLAIQPLHDLQD
FT                 EQTISTLGLLWDPKADNLRFKVEIPLPAAVLTKRKVMSYIAQIFDPLGLVG
FT                 PVIAKAKLFMQRLWALKQDGVSCEWDSPLPEKLQHEWKQFHTTLPMLAEVR
FT                 VPRLVLSPGGDSIQLHFFADASSVAYGACCFVRTVSADGIQVRLLTSKSKV
FT                 APLSTHHSIARLELCAAHLATQLFKKIEASLKINSIAYFWSDSSTVLQWLR
FT                 SSPTRWKTFVANRVSKIQNTTCIDHWRHIAGSDNPADDISRGLNPTDILGC
FT                 FRWWQGPAWLALAPDCWPKTIIDQENSSAVSEEGRKNSIVALTAVQISFCT
FT                 DLFSRYSRYNKLRRVVAFCSRYLHRLKERAQQRQTRSHIATLGGSIRSKSP
FT                 SVPPLTTAELQHAEHLLCRLAQRETFAEEISDLSNGERVAKSSALKWLKPY
FT                 VDEDGTLRVGGRLRNAALSVDNKHPIVLSAKHPLSALLASSYHVSLLHAGP
FT                 QLLLATLRQKFWILGGRNLVKSVFHQCHTCFRSKPTLVQQSTADLPVSRVS
FT                 PTRPFSVCGVDYCGPFYVKSAVRNRGPIKVYVAIFVCFSTKAVHIELVSDL
FT                 STPAFLAALRRLVARRGRIVELHSDNATTFKGASHVLNRVYRMLKIEAADR
FT                 QQIFDWCSGNEIVWKFIPPRAPHFGGLWEAAVKSAKTHLLKVVGNVNVTYE
FT                 DLLTLLAQVEMCLNSRPLTPIPEDPTDLDVLTPGHFLVGSNLQAVPEPNWK
FT                 ETAENRLDHWDLTQKRLQQIWSRWYPEYLQQLQSRASKGCNPPVTIEVGAI
FT                 VIIKEDNVPPANWPLGKIVKLHPGKDGVVRVVTLKTASAKEVVSPVARIAL
FT                 LPSPRSSK"
XX
SQ   Sequence 6772 BP; 1613 A; 1823 C; 1683 G; 1653 T; 0 other;
     tttggtcctt cgaaccggat cgaaggcaat tcagaccgag aagtgattcc gcggaaaaag        60
     tgatcgaaag caatcagacc aaacgcgcgc gttggtcatc ggtggtggct gccattcaat       120
     ttggcaattt ctattgcttt gtgcgaacaa acagtgcgag tgcgctggga ggttttacca       180
     aggcgggtaa acctcgtggg tgtgtggaga acagcaatcg attgcaatca gtgcactttc       240
     ggtgactgct ttgtgcgtgg tgatagtatc acagcgggta ctattaggca gccgtgggag       300
     ataattaatt atcgcaaacg attttgcgac ggtacattgg gtgaacgata gtgactatcg       360
     gttctagtgc ttcgatcgcg ggtgaaagaa agcaaacttt cgtagcattt tctgccgtcg       420
     gcaaacgttt cgcgtgagtg ttgtgcgaag aacaattttg cgcttgagag tgcactaagg       480
     cgagtgttac tccattgtag tgaagaagat cggacattgc cctggccatt gtgaacgtcc       540
     gtggccattg tgtggaaggt gattcaaccc gtttcgccat catcgccatc ttcaacgctt       600
     gctagcgtgg cttggggacg cgactcggcg ccatcgcttc ggtgccattg ggtccatttg       660
     gcgcaaatcc atccagcctt tggaaagcat ccgatcccta ggattgctcc cggtgagtcc       720
     gttccaaact ttattgcatg tggctagcag tagccgtgac ttagtacgta agaaagtggg       780
     tagctttttt catttgctat tgtggcttgg tggttaagac ggccgcgaat cgagtggaaa       840
     tccgttcgcg ccctcgattt gcgataccgc gtagaagtgg gttcgttcgc gacgggaagg       900
     agagatcgat tcgattatta aacgatccac ttccgtcgat ttcaaacgtc gcgcagggtt       960
     tttacaccgc gacgggaagg agcaatatcg atcgattgtg tatcaccctc gccggttcgg      1020
     tttcgtgtag aaacggttag tttcgcgacg ggaaggattt ttgcgttcga ttaaaactac      1080
     cgtttccgtt cgatttcgtt cgcgatgcct gtcaaagagg agaagcagct ggcagtgagc      1140
     atgcatcaac gcaaatgctt gatcaaaatg ctggatgcgc tggagcggtt tatccgtgat      1200
     tacgatcatg atcgcgacag ttatcaattg tgtgtgcgga ttgattccct ggataagctg      1260
     aacacagatt tcgcggattg tcagtcagcg gtggagagat acgacgaccc agaagcgctg      1320
     gatgtacaca ttgatgaacg tgtggtgttc gagcaacgtt actgcaaggc aaagggtttt      1380
     cttcttgcga agcgcaatgc agatgccaac cagtcggcgc tcaatgaatc agtgctagct      1440
     cctcaacacc atccgaattt ccacctccgc ctacccaaaa tcgaaatgcc gaagttcaac      1500
     ggcgattttt cacgctggat ctcattccgg gatacattta cgtcaatggt ccacgtgaac      1560
     ggtggcattc ctgccgtcgc caagctccaa tatcttcttc aatctctcga gggtagtgcc      1620
     aagaaaccct tcgaatcggt ggatatcgag gctgacaact acgcaacgac atgggatgcg      1680
     ctgctgaaaa ggtacgacaa tcgcaagtac ctcaagaagc agctcttcaa ggctctttac      1740
     gatctgccag caatcaagca ggagtgtgca acgcggcttc acggtttggt cgacgattac      1800
     caacgtcatg ttcgcgccct atccaaactg ggcgaaccgg tggaccattg ggatttgccg      1860
     ctcatctatc tgctctgcta caagttggat ccagctacac tgcgcgcgtg ggaggagaaa      1920
     accagccaaa aggacgacgt taaatacgat gagctggtcg aatttctgta tcagcgcgta      1980
     cggattctca attcagtggg atcagagagt catcatccag cctcgtcgaa ggtggccggc      2040
     tatccacaga agagtttcaa gcaaaaggtg tcagccaacg cagcaactgc ttcgcctcca      2100
     acctatccgt gtccgctttc ctgttcggac agccattcgc tccggacttg tccggtattt      2160
     ctcgggaaaa ccgttagcca acgccgagaa ttggtttccc aaaaacgact gtgttggaac      2220
     tgccttagtt tcggtcatca atccaagaag tgtggttcca aatattcgtg tcgtacgtgc      2280
     cgcgagaagc accattcgct tctacacgat accgctccag taaaggtttc cgctacacca      2340
     gccatccaag caaatccatc tgaattatcc gtgtcatcaa agctcgctgt ttcagcggct      2400
     ccattggttc aacaaccgct accatctacg tctcaacaag cttctggttc ccgtcaggtc      2460
     agcatggcag tccaaaccac ctgcaccatg actcttctgg aaacggttgt tctcaacatc      2520
     gtcgatgacc acggtaacac gcacaaggcc cgagctctcc tcgattcggc atcgatgtcg      2580
     aattttattt cgaaaccatt ggcaaagagt ctctacagcc gtcggtctac agtggatgtg      2640
     tccgtcgcag gcatcggatc atctacacag aagattagga gtgccattac tgcaaccatc      2700
     gagtcgggag atcgaacgat ctcgatgaaa ctgcaattct tggtactgaa gcagccatcg      2760
     tcggagctgc caacaacgcc gatagacatt tcggcgtgga aatttcctaa tgtcaagtta      2820
     gcagatcccc agtttagtac tcccggatgt gttgatctag ttatcggtag tgaaacatac      2880
     tgggaattac atacaggacg gaagatttct ctgggcaaag gtcttccgtg ggtagtcgaa      2940
     actccatttg gttgggcggt ctctggtccc gcttctcgct cggctacctg cattccacgg      3000
     ttctgctacc tttctactgc cgatgatcga ctggaatccg ctctacgcaa attctgggac      3060
     atggaaacca ttccattggc tccagttcga tccaccgaag aaagccgttg tgaagagctg      3120
     tacgctgcaa cgacgacacg caatgcaact ggacgatacg tcgtccgcct gccgcggact      3180
     gaagaccctg aaaaggtttt gggtgaatcc agatcaatag ccgatcgtcg ttttttgagc      3240
     ctggaacgcc gacttgaaag agatcctgca accaaggact catacaatcg gttcatggaa      3300
     gagtacctcc aactcgggca catgaataag atacaagagc ctgtggatga tagtattcca      3360
     cactgctaca ttcctcatca cgtcgttttc aagcaatcca gcacgactac gaaggtccgg      3420
     gtagtctttg acgcgtcatg caagacctcg tccggctatt cgttgaacga cacgcttctc      3480
     gttggacctg tcgtccagca agacctctac tccatctacc tgaggttccg gacgcaaatc      3540
     gtcgctgttg tagcagacgt cgaaaaaatg tacaggcaag tgttgcacca tcccgaagat      3600
     cttccattcc tccgtattcg tcatcgcagc agtccgtccg atcccatcac tacgtacgag      3660
     ctacagaccg tcacgtacgg tacagcgagt gcgccgtact tagccaccaa aacccttcag      3720
     caaatcgcca atgatcaagc agaattgtat cctgctgctg tcgacccagt tgtagaagat      3780
     ttctacgtcg acgatctact gtccggcgca ccggacgtcg actctgctgc aactctccga      3840
     cagcaagtca ccgctatgct cggctccgcc ggttttaccc tcaaaaagtg ggcgtctaac      3900
     gttcaggaag tattgcagga tgtaccgccg gaagatctgg ccatccagcc tcttcacgac      3960
     ttacaggatg agcagacaat ctccacgctc ggtcttctat gggatccgaa ggccgataat      4020
     ctccgattta aggtagaaat acctctccct gctgccgttc ttaccaagcg gaaagtgatg      4080
     tcatacatcg ctcagatttt cgaccctctg ggcttggtag gtccagtcat tgcaaaggca      4140
     aagttgttta tgcagcgcct gtgggcgttg aagcaggacg gtgtttcctg cgagtgggat      4200
     tcgccattgc cagagaaact tcaacacgag tggaagcaat tccatactac attacccatg      4260
     ctcgctgaag ttcgagttcc tcgtttggtg ctctctcccg gcggtgacag tattcagctt      4320
     catttcttcg ccgacgcgtc atccgttgcg tacggagcct gttgctttgt ccgtacagtt      4380
     tcggcggatg gaattcaagt tcgcctgttg acgtcaaagt caaaggtagc cccactgtct      4440
     acacaccatt ccatcgccag actagaactc tgcgccgcgc atttggcaac gcaactcttc      4500
     aagaagattg aagcatcctt gaaaatcaac tccatcgcct atttttggtc agactccagt      4560
     accgtgctac agtggctgcg ctcatcacca acccgttgga agacattcgt cgctaatcgg      4620
     gtgtctaaga tccagaacac tacgtgcatc gaccactgga ggcatatcgc tggctccgat      4680
     aatcctgctg atgacatttc ccgcggtctc aacccaacag acatcctagg ttgtttccgc      4740
     tggtggcaag gccccgcttg gttagctctg gctccggatt gctggccgaa gaccatcatc      4800
     gaccaagaaa attcttccgc cgtgtccgaa gaaggacgca aaaattcaat tgtggcgttg      4860
     actgccgtcc agattagttt ttgtactgat ttgttttctc gatactcccg ctacaacaag      4920
     ttacgccgag tggtggcatt ctgcagtcgt tatctacatc gtttgaagga gcgcgcacag      4980
     cagcgccaga ccaggtcgca catcgctaca ttgggcggta gcatccgatc aaaatcacca      5040
     tcagtcccac cacttacaac cgccgagctc caacacgctg aacatctact ctgccgttta      5100
     gcacagcgtg aaacatttgc tgaggagata tcagacttat cgaatggcga acgtgtcgcc      5160
     aagtcgtcag cactcaagtg gctgaaaccg tacgtcgatg aagacggcac tcttcgcgtc      5220
     ggcggccgtc tgcgtaacgc cgcactatcc gtcgacaata agcacccaat cgttctgtcc      5280
     gccaaacatc cgctgtctgc tctgctggct agcagttacc acgtaagcct actgcacgca      5340
     gggccccaac tcctgctagc cactctccgc cagaagttct ggatccttgg cggcagaaat      5400
     cttgttaagt ccgtcttcca ccaatgccac acttgtttcc gatccaagcc cactctagtc      5460
     cagcagagca cagccgatct gccggtctcg cgagtttcgc cgacgcgtcc gttttccgtg      5520
     tgcggggtcg actactgtgg accattctat gtgaagtcag cagttcgaaa tcgtggtcca      5580
     ataaaagtct atgtggccat attcgtctgc ttctcaacca aggctgtcca cattgagcta      5640
     gtaagcgact tgtcaactcc tgcgttccta gcagcactcc gtcgtctcgt cgcccgccgt      5700
     ggaaggatcg tcgaactcca ttccgacaac gccactacct tcaaaggtgc ttcacatgtg      5760
     ctcaatagag tctatcgcat gctgaagatt gaagccgccg atcgtcagca aatcttcgac      5820
     tggtgttccg gaaacgagat agtgtggaaa ttcattccac ctagggcacc acattttgga      5880
     ggcctctggg aggccgccgt caagtcggcg aaaacgcatc tgctgaaggt cgtcggcaac      5940
     gtcaatgtaa cctacgagga tctgttgacc ttgttggcgc aagtcgagat gtgcctcaac      6000
     tctcggcctc tgacgccgat acctgaggat cccaccgatt tggacgtcct aacgccagga      6060
     cacttccttg tcggaagtaa tcttcaagcg gttcccgagc caaattggaa ggagaccgct      6120
     gaaaaccgac tggatcactg ggatttaacc cagaaacgtc tgcagcagat ctggtcccgt      6180
     tggtatcccg agtacctgca acaacttcaa tctcgtgcat ctaaaggttg caacccgccg      6240
     gtcaccatcg aggtcggcgc catcgtcatc attaaggagg acaacgttcc cccagcaaac      6300
     tggccgctgg gaaaaattgt gaagctccat cccgggaaag acggtgtcgt ccgtgtggtg      6360
     accctcaaga cagcgagcgc caaagaagtg gtgagtcccg tggcccgcat tgcacttctt      6420
     ccgtcgccga gatcttccaa atagaaacca ggtagagcaa cccttattgg gagaacttgc      6480
     tcgatgctca cctgcgtttc tgcaaaggta gttgcaggtc caatacctta cagtttcccc      6540
     gttagatcta cctggtcttt ttctttgttc ccggtcgacg atgatgaacc tccaaccgac      6600
     gttactggca ttcgaggcat gaacgaactg aagtcccgtg tcaacgcagt gaagtctccg      6660
     tcaacggcaa cgagaagtac tcagccgaac ttcagagaga aggccgagta aacgtgcaaa      6720
     cgttgttact ttgtaaattt gttgaaacat ccatgtttca aggtggccgg aa              6772
//
ID   BEL-104_AA-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   supercont1.298;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-104_AA_;
KW   BEL-104_AA-I; BEL-104_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-478
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.298; Positions 1129155 1128678.
XX
SQ   Sequence 478 BP; 134 A; 97 C; 112 G; 135 T; 0 other;
     tgttggagat ggtcattaat tgtatatagt tttttatcaa tgaatttatt atttccaaat        60
     gacaccaaca atttcctcat ctcaacttga ccacttagtg agagtgagcg gtgaccgaac       120
     acactaggta gccgatggtc actcagcaac gctgtaggca ggagaatata cagcaaattg       180
     taaatagaga tcagtagcaa aatacacgtt gaactgcaca gtacctacgg tcggtcgttc       240
     ccaattggtc ttatcgatga caaaatcgac taagtgttga gctaaaatcc caactttaac       300
     tttcggcgcg tgtgtgattg gttgcgttct atagagaacg gcaaagtccc cccgtaaaag       360
     ggacttgtga aaattttgtg gttggtggca cttgtactcc gtgttagtgt ttctcggtgc       420
     tagtccagga ctagcgaagc aagtccttcg agactcggca aggcgagtat cgtcatca         478
//
ID   BEL-105_AA-I repbase;    DNA;    INV; 5677 BP.
XX
AC   supercont1.4;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-105_AA_;
KW   BEL-105_AA-LTR; BEL-105_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5677
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.4; Positions 2092295 2097971.
XX
CC   Positions [4564-5157] - Integrase core
CC   'AATTA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1296..2654
FT                 /product="BEL-105_AA-I_2p"
FT                 /translation="MSSILQDVCPPAPRAGIPKAPMLELSRSGHQGRSCTS
FT                 KFSYRSCHQRHHTLLHENPSTNVSAAPAVVSGQPSQQLRPATSTTIVESSG
FT                 SANPNSQVSLSVQSCQSTVLLETVNLLVVDQNGAEHTARALLDSGSMCSFI
FT                 TKKLANILNLRRTKVDVAVSGIGDSSKQIKRKLTATIKSKMLSYTTTLEFL
FT                 ILKRPTVCLPTTPIDVTSWKFPNVPLADPHFHVPADIDLVVGGEVYHELHT
FT                 GSKISFDGGQPVFVETLFGWTISGKVPTKSPEVPRVCHLTTVDRHLEQALQ
FT                 KFWELEAVEQCSKFTAEENVCEELYSTTTTRESSGRYVVSLPLTRDPLVTL
FT                 GESRSIAERHFLSLERRLARDPTTKEAYCRFMEEYEHLKHMVKLVDPVDES
FT                 QPHCYLPHQTGIQRIQHNDQGPRCLRRFVQNFFWILRKRPTAGWARRSRRS
FT                 TVDPPPLP"
FT   CDS           2470..5343
FT                 /product="BEL-105_AA-I_1p"
FT                 /translation="MNPSHTATCRTKPVFKESSTTTKVRVVFDASCKTSSG
FT                 FSVNDLQLVGPVVQEDLLSIHLRFRSHQIALVADVEKMYRQILVHPSFRRY
FT                 QLILCRPDPSLPIATYELQTVTYGMASAPFLATRTVVKIAEDSTERYPAAA
FT                 PKAKKDFYVDDCLTGAEDVESAIRVRQEMSDMLSSAGLPLKKWASNSPEAL
FT                 ANVPAEDLALAPYYGLQDAQSVSTLGLIWEPRSDMMSFKVQLPLPAPVLRK
FT                 RRIMSYIAQIFDPLGLVGPVIVVAKLFMQRLWALKTEKGDPYEWDRPLPAH
FT                 LQKEWKTFHGMLDAIATLRIPRCVCLANPTSLQFHFFCDASQKAYGACCYV
FT                 RTESAGAVRIRLLTSKSKVAPLAHPKIIARLELCGAVLASNLYKKVIQSIL
FT                 KSAQVYLWTDSAIVLHWLDSSPARWKTFVANRVAHIQETTASCHWNHVSGT
FT                 CNPADPLSRGVDPINIQKHSLWWNGPEWLSLPPSEWPISELPSLDPSWISE
FT                 ARIHVAMVVTVDSEFSNQLFSRYSNFSMLRRCIAYWMRYFRVLKAASKNST
FT                 IEPFETLTTTDFHEADVTLCRLAQRASFPNEMSSLLSGERFPISSPLKWLK
FT                 PKLSKVGVIRVGGRLGRAVVSEDVKHPIVLSSKHPLSSLLAKYYHEMLLHA
FT                 GPQLMLATIRQKFWIIGGQNLVRRTYHQCLKCFRSKPILVQQSIADLPRSR
FT                 VTPTRAFAVCGVDYCGPVYIKSPVRNQAPTKAYIAIFVCFATRAVHIELVS
FT                 DLSTPAFLAALRRFVARRGRMREIHSDNGTAFKGAANELRRIYEMLKSNEA
FT                 DRKQILDWCAQNEIVWRFIPPRAPHFGGLWEAAVKSAKNHLLREIGTVNVA
FT                 YEDMCALLTQVEMCLNSRPLVPIPTEPSDLEVLRPGHFLIGESFQAVPEDN
FT                 LCDVPDNRLTHFQLTQKRFQRIWSRWIPEYLQQLQSRATKCKNPVTITPGC
FT                 RRD"
XX
SQ   Sequence 5677 BP; 1403 A; 1666 C; 1345 G; 1263 T; 0 other;
     tttggtcctt cgagccggct cgaaggttcc cccgaccaga aggacaggct cggtgagtac        60
     accatttcat tttcttcccg cgcggctggc aatcaattat tacgacctgt taaggtcaat       120
     ggtttgctgc tggctttgtt cttataccct agccaagcca aacgaaagtc cagcaaggca       180
     aacaaagtct atactcaagc cagtaacaaa gcgcgcgcgc gcaaatagca cagtaggccc       240
     cacaaaggga gcagaaattt caacaccttg ctttggcgga gcaacgctgc tggttgtacg       300
     tgattccgtg gaagccttct tcaagaagta cgacgatcag cgagacatct accagatccc       360
     aattcgcctt gaagccctgg accgcgtcta caaggaattc caagagctgc agacggaaat       420
     tgaaaagtac gacaccgccg agaatttcga cgaccaccta gaagaacgag cagctttcga       480
     gtcgagattc tgcagcgcca agggatttct attgatgaag cgtttcactg atccagccca       540
     ggcactgaac acgtcaacaa caaaccacca aaatgcactt tcgaccggtt ttcacctacg       600
     actaccgaag atcgaccttc caaagttcga tggagatgct tctcgatggc tttccttccg       660
     tgatacgttc acctcgatgg tgcattccaa tgcggacatt cctacagtag cgaaactaca       720
     gtacctccta agatccctag aaggagaagc gcacaagcca ttcgagtcga tcgatataga       780
     agcggacaac tatgggtcga catgggacgc gctgctaaag cgctatgaca accgcgttac       840
     ctaaagcgcc acctcttccg agcattatat gatctcccac cgctgaagga agagtcccca       900
     caagagctgc acgatctggt tgacgattac cagaggcacg ttaaggctct ggcgaagctg       960
     aatgaaccag tcgaatactg ggacaccccg ttgatcaacc tgctgagcta caagctggat      1020
     cccacaaccc ttcgagcctg ggaggagaag acgagcaaag tcgacgacat cacctacaac      1080
     gagttgatcg atttcttgta ctagcgggtc cgaatgttga ggtccgtagt caccgatctg      1140
     cagcagcgtt ccaatcaacc cggtcaaacc aaggtgaccg gtgccgctca attccagaaa      1200
     aggccgtaca aaatggtttc caattccgcc acgatcgaat ccaaatccta cgctccgagt      1260
     tgtatagcct gtccagagag ccacttccta ttccaatgtc cagcattctc caagatgtct      1320
     gtccgccagc gccgagagct ggtatcccaa aagcgcctat gctggaactt tcccgttctg      1380
     gacaccaagg cagaagttgt acgtccaagt tcagttaccg aagctgccat caaagacacc      1440
     acaccctttt gcacgagaac ccatccacga atgtttccgc cgctcccgcc gtcgtatctg      1500
     gccaaccatc ccaacaactg cgcccagcaa cctcgacgac catcgtcgaa tcctccggat      1560
     cagcgaatcc gaactcccaa gttagtttgt cggtacagtc gtgccaatcc accgtcctgc      1620
     tggaaacggt taatctcctt gttgtggacc agaacggcgc ggagcatacc gctcgtgcgc      1680
     tgctagattc gggatcgatg tgcagcttca ttaccaagaa actagcgaat atcctcaacc      1740
     tccgtcgtac gaaggtagac gtcgccgtgt ctggtatcgg tgattcctcc aagcagatca      1800
     aacgcaagtt gactgccact atcaagtcca agatgctttc gtacactacc acgctagagt      1860
     tcctcatcct aaagagacca actgtctgcc tgccaaccac tccgatcgac gttacctcgt      1920
     ggaagtttcc caacgttccc cttgctgatc cccacttcca cgttcctgcc gacatcgacc      1980
     tagttgtcgg aggagaagta taccacgaac tgcacaccgg cagtaagata tcgtttgacg      2040
     gaggacagcc tgtcttcgtc gaaaccctgt tcggatggac tatctcaggg aaagtaccaa      2100
     ccaaatcacc cgaagtccct cgagtttgcc atctcactac cgtcgatcgc cacctggaac      2160
     aagccctaca gaagttctgg gagctagaag ccgttgaaca gtgctccaag tttaccgccg      2220
     aagaaaacgt gtgcgaagaa ttgtattcca ctaccaccac tcgcgaatcg tcgggtcgtt      2280
     acgtcgtttc cttaccactc acccgcgatc cgctcgtcac tctcggtgaa tctcgatcaa      2340
     tcgccgaacg ccacttcctg agcctcgaaa gaagacttgc gcgtgatcca accaccaagg      2400
     aggcctactg tcgctttatg gaagaatacg aacacctgaa gcacatggtg aaactcgtgg      2460
     atccagtaga tgaatcccag ccacactgct acctgccgca ccaaaccggt attcaaagaa      2520
     tccagcacaa cgaccaaggt ccgcgttgtc ttcgacgctt cgtgcaaaac ttcttctgga      2580
     ttctccgtaa acgacctaca gctggttggg cccgtcgttc aagaagatct actgtcgatc      2640
     cacctccgct tccgtagtca ccagattgcc ctcgtagccg atgtcgagaa gatgtatcga      2700
     caaatcctgg tgcatccctc tttccgtcgg taccaactca tcctctgtcg tcctgatcca      2760
     agtttgccca ttgctacgta cgagctgcaa acggttacat atgggatggc ttccgcaccg      2820
     ttcctagcga cacgcacggt cgtaaaaatt gcggaagatt caactgaaag gtatccagca      2880
     gctgcgccga aagccaagaa ggacttctac gtggatgatt gcctcactgg ggctgaagat      2940
     gttgagtccg caatccgcgt acgccaggag atgtctgata tgttatcatc agcgggacta      3000
     ccgctgaaaa agtgggcgtc aaactcgcct gaagcccttg ccaacgttcc agccgaagat      3060
     ttggcacttg cgccgtatta tggtctccaa gatgcacagt cggtgtcaac cctcgggctt      3120
     atttgggaac ccaggtccga catgatgtcg tttaaggttc aactgccact accggcaccc      3180
     gttctcagga aaaggaggat catgtcatac atagcgcaaa ttttcgatcc acttggcctg      3240
     gtgggaccgg tcatagtcgt cgccaagttg ttcatgcagc gtttgtgggc gttgaagacc      3300
     gagaaaggag atccatacga gtgggaccgt ccgcttccag cacatctgca aaaagagtgg      3360
     aaaacgttcc acgggatgct cgacgccatc gccaccctcc gaattccacg ctgcgtatgc      3420
     ttggccaatc caacctcgct ccagttccat tttttctgcg acgcctctca gaaggcgtat      3480
     ggagcatgct gttatgtgcg gacagaatcc gctggagcag tgcgtatccg actgctgacg      3540
     tccaaatcca aggttgcacc gttggcccat ccgaaaatca tcgctcgtct ggagttgtgt      3600
     ggtgcagttc tggcgtccaa tctttacaaa aaggtaatcc aatccatcct gaagtcggct      3660
     caagtgtacc tgtggactga ttcggccatt gtcctgcact ggttggactc gtcgcctgcc      3720
     cgatggaaaa ctttcgtggc caatcgggta gctcacatcc aagaaactac cgcatcctgt      3780
     cattggaacc atgtttccgg gacttgcaat ccagctgatc ccctttcccg tggcgttgat      3840
     ccgatcaata tccagaaaca ttcgctgtgg tggaacggac cagaatggtt atccctgcca      3900
     ccatctgagt ggcctataag tgaactgcca tcactcgatc cctcctggat ttcggaagcc      3960
     agaatacatg ttgctatggt agttaccgtc gactccgagt tctccaatca actgttcagc      4020
     cgatactcca acttcagcat gcttcgtcgt tgcatcgcat actggatgcg atattttcgt      4080
     gtcctaaagg cagcctctaa gaattccacg atcgaaccgt tcgagaccct aacaacaacc      4140
     gatttccacg aagcagacgt taccctttgc cgcctagctc agcgtgcgtc gttcccgaac      4200
     gaaatgtcca gcctactttc cggagaacgc ttccctatat cgtcgccgct gaagtggctg      4260
     aagccgaagc tcagcaaagt aggtgttatc cgtgtcggtg ggagactcgg cagggctgtc      4320
     gtatccgaag atgttaaaca cccaattgtc ctctcatcca agcatccgtt atcctctctg      4380
     ctggccaagt actaccacga aatgctgctc cacgctggtc cccagctcat gctcgccacc      4440
     attcgccaga aattctggat catcggtggc caaaacctcg tccgccgtac gtaccatcaa      4500
     tgcctcaagt gcttccgcag caaacccatc ttggtgcagc agagcatcgc cgatttgcca      4560
     cggtcaaggg tcacgccgac cagagcgttc gccgtgtgcg gggtcgatta ctgcggtccc      4620
     gtctacatca agtctccggt gcgcaaccag gctccaacta aagcatacat cgccatattt      4680
     gtgtgcttcg ctacccgtgc cgtccacatc gagctcgttt ccgacttgtc cacgccggct      4740
     ttcctagccg ccctccgccg tttcgtcgcc cgccgtggaa ggatgcgaga aatccatagc      4800
     gacaacggca ctgctttcaa gggtgcagcc aacgagctga gaaggatcta cgagatgctg      4860
     aagtccaacg aagccgatcg gaagcagata ctcgactggt gtgcgcagaa cgagatcgtc      4920
     tggcggttta tacctccccg tgccccacac tttggtggac tgtgggaagc agccgtcaag      4980
     tccgccaaga accatctatt gcgtgaaatc ggcaccgtca acgttgccta tgaggacatg      5040
     tgcgctctgc tgacccaagt ggagatgtgc ctgaattcca gacccctggt tcccatccca      5100
     accgaacctt cagacctgga agtcctcagg ccaggacact tcttgattgg ggaaagtttt      5160
     caagccgttc cggaagataa cctctgtgac gttccggaca accgccttac ccacttccag      5220
     ttgacccaga agcgcttcca gcgaatttgg tcccggtgga taccggaata tctacagcag      5280
     ctccaatcgc gagctacgaa atgcaagaac cctgtcacca tcactccagg ctgtcgtcgt      5340
     gattaaggac gaaaatcttc cgccgatcca atggccgctc ggaaagatca tcaaggtgca      5400
     tccgggaaag gacggagtag tacgtgtcgt cactctgaag accgcaacat ccgaggctgt      5460
     cgttcgaccc gtcgccaaga tcgcgctgct accagtaccg gacaaccaag ttccgcaatc      5520
     caacgattga agctggtaga gcacgccgaa atttgctcga tgccttcgtg gaaacctagc      5580
     agacgacaac gaatccatcg acgattagtg ttgaactagc caagcaagtt caaggtggcc      5640
     ggaatgatga gaattgaatt gaaattgaac taaatta                               5677
//
ID   BEL-105_AA-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   supercont1.4;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-105_AA_;
KW   BEL-105_AA-I; BEL-105_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-502
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.4; Positions 2091793 2092294.
XX
SQ   Sequence 502 BP; 150 A; 90 C; 121 G; 141 T; 0 other;
     tgaatttgta tcgtataccc tattttgaga agaaaagaga gtaagtgatt acgagagtag        60
     tgcgcgtttc gattaatgtc cacatgtctg cgataaatgg tttatagaca gagtgaagcg       120
     aatcgtgtat ataggagagt aaggtcagtt cgagctagac cgtcggagtg ataaccttcg       180
     taggttactt tgtgattgat tcggtcgttt cgcgtgtgaa ggaaagatta attgccaagt       240
     gaaatagccc ttttctaata agtgtccaaa agtgtaacga atctaaattg gctaacggca       300
     acaacttgaa ccagtacaag tgaccaaacc ctgaaccgaa tagcattgtc agaccagtgg       360
     cctgtaattc caatgaggat ttgctaagtg cggacgacaa tatccagttt cttgtttggt       420
     acactcatcg cagttatttg tctgggccgt ttatcactaa acggtggaaa ttccttcgac       480
     gaagaacggg taagccctaa ca                                                502
//
ID   BEL-106_AA-I repbase;    DNA;    INV; 6118 BP.
XX
AC   supercont1.254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-106_AA_;
KW   BEL-106_AA-LTR; BEL-106_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6118
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.254; Positions  391405  385288.
XX
CC   Positions [5009-5611] - Integrase core
CC   'ACAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(638..1924,1928..6118)
FT                 /product="BEL-106_AA-I_1p"
FT                 /translation="MTREEDLAEVVETTKNQLCSLESSLKRMASEAKKLKD
FT                 PSLIHVKTTISLLDSVYEQASNVLLKLEGFEGPQQQQRREPLMAIYLNAKV
FT                 TLEELAQALRPAPTAGSPNGLLDQTIQQSASRADHLPRIDLPRFNGSPTEW
FT                 LAFKSRFEKRIATIGEDADKFAFLTKCLEHFEPAKNSIEALENSGATFVEA
FT                 WAKLETRFYKKRIAYEGYFSKLLKLKKSTTPNAKAIMALIDAVDTTVHAAK
FT                 QIQNDRNPNLDCVANGLLVSLVKARLDEGTLSRMEDKMDLQTVYTWTEFKG
FT                 ELEKHANQLACLNMSEVKSASTKVMGALTQTKNYPENKKSHPCDICAKDGH
FT                 KIWSCPEFATIKPRKRQEVAKQKRLCFNCLQKGHGVSNCRSTYTCRTCQGK
FT                 HHSMLHEEKDSTATPPLQQVNAVSNSAPSSSNSQNLAEGYVFLATAMVKIT
FT                 SPNGTFQPVRCLLDSGSQLEAIAESTFKRLGVPHFNEKTIVSGIGGMLQLN
FT                 SKTKVVLIAKSTNYTMEVELVILPKLLMDQPTQCINLQDVDIPANILLADP
FT                 HFNVKGPIELLLGARVFYQVMEGEQKRIGRGPTFQNSKFGWLACGLVATGG
FT                 TNACSGPIFQESAMGWIAQEPSNHVSPASIALSINREPSSSAYPEDELAKL
FT                 IEKFWKLEEAADLVHQPAALCNNEAEAHFRNTVKTNADGRYVVRIPLRGEP
FT                 SSLGESYSQAYRRFTSLERRLERSPQTYHEYRKFMEEYKSLGHMKPISNED
FT                 FNKVKFFIPHSCVIKPDSTSTKLRVVFDASAKTSSGVSLNDIQVIGPTIQK
FT                 ELFDQLIEFKTHDKVLMGDITKMYRQVQVAEEDTWLQCILWRNQSCEPIEA
FT                 FRLTTVTYGEAASSFLACRALHAAGEDYREIDPEIADLIQKSFYVDNLMIG
FT                 AASTEELQRMKKGIQDALLRHGFPLRKWASNDASTLEGTPPEDLEPLIQMG
FT                 DQEVIKTLGVAWNPLHDTFQFISNGKETGSLKTLTKRQMVSKILRLYDPIG
FT                 LVQPVIVTAKIQMQQLWKHRLNWDDEIPSDVIKEWKEFESSLAELQRIEFP
FT                 RMTIPSKTIVLDLHGFSDASGKAYGCVIYLHAIDLQGNESTNLLCSKSRVA
FT                 PLKYEEPPRSATSSTKATIPRLELQAALLLSELSARIKGILGKRITSEHYY
FT                 SDSQVTLSWIKSPPSRWDTFIRNRVMKIHQLTNPNHWEYVPTKENPADMVS
FT                 RGISVKKLIQSELNFWLYGPEYIKKRETYPRNKYRYDSTAEIEQRRAPTAL
FT                 LIAAKGKDCADLIANYPHHNSYFKTVRHFAWLSRAINNLKGINANTGMNHK
FT                 RSGPLTKIELDQGLQLIIKTMQTTIYPNEMGELNRNGTIPAKGAFEHIKVK
FT                 VERGILHIAGRLQNANMPNSEKNPMLVPKSHPFARVIIKNIHEMRFHAGTN
FT                 IVMSEFRLQFWMRDLRRTVQGVIRHCVSCARARPRRLQQEMGQLPAPRVNQ
FT                 SAAFSHTGVDLCGPFEVLLNQRSKCKIIAYACIFVCFTTKAVHLEVVEDQS
FT                 ASAFISALLRFTSMRGVPEVIYSDNGRNFVGASRELNRLRKAYNNQNFQNK
FT                 IIDTAAKSGIHFSFIPPRSPNFGGLWESNIKVAKRLFSAAARGAQLNIMEL
FT                 QTLFYQVAAIMNSRPLTAVYAGTEAPTPLTPGHFLIARPMQAIPMPTQPEN
FT                 TVNLTTRWKRVQHQTEQFWRRWHTEYLHQLRNYAKWTKRHENVKVGQIVLI
FT                 GDDNIPVARWPMGIITQVHPGEDGIVRVAVVRTSTGTYKRNVRTLAPLPIE
FT                 EEHESTHNQESHSVIDKDVTITQRETSEFEDEPPPQAPQMIWDGRLRARPK
FT                 GGRK"
XX
SQ   Sequence 6118 BP; 1959 A; 1469 C; 1420 G; 1270 T; 0 other;
     tttttggtga ccccgacgtg atcctcgact cgcgcgcgga tcgaggatcg ccgcataagt        60
     gtaataaaaa ctaatcaaat caccgcaccc gagcggtggt tagtgcatag tgacgaatcg       120
     aaacaccccc cgtgcgggat ggaaagtgca aaaaattgaa cgaacacccg ccagcggcgg       180
     caagtggcaa ctctaagccg ccacctgtgt gccgcgaaaa aaaaaaaaaa aaattgaacc       240
     accgtctgca aacggtgcct agtgtacaaa ttgaatcacc cgggagttgg ggcgagtgaa       300
     taaatctaac cagttagtgt gggaaaagtg ctaaagttga acaccgattg acggtgacgg       360
     aacggtctgt gcaaatgacc cgaaatagtg aaatttaaac accgttcgat acggtcaaag       420
     tgattcgcgt gttgctctga gtgatgtcgt ggaaattcaa tcaaggccac ccgctcgtgg       480
     ccaccgcgta gtgccccctg agtggaaaac gaaaatagtg atcgcaggtt cctcccgcgt       540
     ggagaaccac gaacaaaaag gtgatcgccg cccgcgtgcg gtaactgcgg tttgctccat       600
     tagtgagagg caatcataaa ttgtcatacc atccaaaatg acaagagaag aagaccttgc       660
     tgaggtggtt gagaccacca agaatcagct gtgttccctg gaaagcagtt tgaaaagaat       720
     ggccagcgag gccaaaaaat tgaaggatcc ttcattgatt cacgtaaaaa caactatctc       780
     attactggat agtgtgtacg agcaggcgtc aaacgttctg ctaaagttgg agggctttga       840
     aggccctcaa cagcaacagc gtagggagcc actaatggca atctacctca acgcgaaggt       900
     aacgctggag gagctggcgc aagcactgag gccagctccc acagctggtt caccaaatgg       960
     actactggat cagacgatcc agcagtctgc aagccgagct gatcatctgc cccgaataga      1020
     cctgccacgg ttcaacggtt cgccaacaga atggttggca ttcaagagca gattcgagaa      1080
     gcgaatcgca acgattggag aggatgcgga caaattcgca ttcctcacca aatgcctgga      1140
     gcatttcgag cctgcaaaga actcgatcga agcgctcgag aactccggcg ccaccttcgt      1200
     cgaagcgtgg gcgaagctgg aaaccagatt ttataagaag agaatagctt atgagggtta      1260
     tttctcaaaa ttactcaaac tcaaaaagag cacgacgcca aatgccaaag ccatcatggc      1320
     gttaatagac gcggtggaca ccacggttca cgccgccaaa caaatccaaa acgaccgaaa      1380
     tccaaatttg gattgtgtgg ctaacggatt actcgtaagc ctcgttaaag cccgactaga      1440
     tgaaggcacg ctctctagaa tggaagacaa gatggacctg caaacagtct acacctggac      1500
     cgaattcaaa ggagaattgg aaaaacacgc aaaccaattg gcatgtctaa acatgagcga      1560
     ggtcaaatca gcctccacaa aggtaatggg tgcactaacc caaacaaaaa attatccaga      1620
     aaataaaaaa tcgcacccat gcgatatttg cgccaaggat ggacacaaaa tctggtcatg      1680
     tcctgaattc gccacgatca aaccccgaaa acgtcaagaa gtagcaaagc agaaacgact      1740
     ctgcttcaac tgccttcaga aaggacacgg agtgtccaac tgtagatcga cttacacatg      1800
     tcgaacttgc cagggaaaac atcactcgat gcttcatgag gaaaaagatt caaccgccac      1860
     tccccctctc cagcaagtga atgcagtctc aaactcagca ccatcctcat ctaacagtca      1920
     aaattgacta gcagagggct atgtgttctt ggccactgca atggtcaaga ttacttcgcc      1980
     caacggaacc ttccaacccg tccgatgcct attggactct ggaagtcaac tagaagctat      2040
     agcagagagt actttcaaac gactgggagt gcctcatttc aacgaaaaaa ctattgtcag      2100
     cggaatagga ggtatgttgc aacttaattc taaaacaaag gtggtactaa tagcaaaaag      2160
     taccaattac actatggagg tagagttggt catccttcct aaattgttaa tggaccaacc      2220
     tacacaatgc attaatcttc aggatgtgga tattccagcc aacattttgt tggctgaccc      2280
     acacttcaat gtgaaaggcc ccatcgagct gctattaggt gcacgggtat tttaccaagt      2340
     gatggaggga gaacaaaagc gaattggaag gggcccaacc ttccaaaact ctaaatttgg      2400
     gtggctggca tgcggactag ttgcaacagg aggcacgaac gcctgcagtg gtccaatatt      2460
     ccaagaatca gcgatggggt ggatcgcaca agaaccatcc aaccatgtta gtccagccag      2520
     catagcattg tcaataaatc gcgaaccaag tagttcagcg tatccggagg atgaattggc      2580
     aaaattaatc gaaaaatttt ggaagctgga ggaggccgca gacctggtgc accaaccagc      2640
     ggccctgtgc aacaatgaag cggaagctca tttccgcaac acagtgaaaa cgaacgccga      2700
     cggcaggtac gtcgttcgta tcccgctacg gggggagcca tcctctctag gggaatccta      2760
     ctctcaagct tatcgccgtt ttacgtctct cgagcggaga ctagaacgca gcccgcaaac      2820
     gtaccatgaa taccggaaat ttatggaaga atacaagagt ttggggcata tgaaacccat      2880
     cagcaatgaa gatttcaaca aggtgaagtt ctttattcct cactcctgtg taattaagcc      2940
     tgactcaaca tccaccaaat taagggtggt gtttgatgcc agcgctaaaa cgtcaagtgg      3000
     agtatcccta aacgacatcc aagtcatagg acccactatt cagaaggaac tgttcgacca      3060
     gctgatcgaa ttcaaaacgc acgacaaagt gctgatggga gatataacaa aaatgtaccg      3120
     tcaagtacaa gtagctgagg aggacacttg gctacaatgt attctctggc gaaaccaatc      3180
     atgtgaacca attgaagcgt tcagactgac aacggtcaca tatggggaag ctgcttcctc      3240
     gtttctggct tgccgagccc tacacgcagc tggtgaagat tatagggaaa ttgatcccga      3300
     aatcgctgat ctcatacaaa aatcgtttta cgtcgacaat ttaatgatcg gagcagcatc      3360
     aactgaggaa ctgcaacgaa tgaaaaaagg gatacaagat gcccttcttc gacacggatt      3420
     cccattgagg aaatgggcat ccaacgacgc ttccaccctg gaaggaacgc cacctgagga      3480
     cctcgaaccc ttgatccaaa tgggagatca agaagtgata aagacactag gggtagcatg      3540
     gaaccccttg catgacactt tccaattcat tagcaacgga aaagaaacgg gttcacttaa      3600
     aaccctgacg aaacgacaga tggtgtcaaa aattctgcgt ctttacgacc caataggctt      3660
     agtgcagcca gtaatcgtga cggccaaaat acaaatgcag caactctgga aacatcgctt      3720
     aaattgggac gatgaaatcc cgagtgacgt aattaaagaa tggaaggagt tcgaatcgtc      3780
     gttggcagaa ctacaaagaa tcgaattccc gagaatgaca atacccagca aaactatcgt      3840
     attagatttg cacggtttca gcgacgcctc aggcaaagca tatggatgcg taatatattt      3900
     gcatgccatc gatctgcaag ggaatgaaag cacaaattta ttgtgctcta aatcgcgagt      3960
     agctccacta aaatacgaag aaccacccag aagtgcgact tcgtcaacaa aagccacgat      4020
     accgcgcttg gaattgcaag cggccttact gctaagcgaa ttgagcgcta gaataaaagg      4080
     cattctagga aagaggataa cctctgaaca ctactacagt gactcccaag ttactctcag      4140
     ctggataaag tcgcctccgt cccgctggga cacctttatc cgaaatcgag tcatgaagat      4200
     tcaccagtta acaaacccaa atcactggga atacgtgccc acaaaggaaa atcccgctga      4260
     tatggtgtct aggggaattt ccgtaaagaa gctgatccaa tcagaactca acttctggct      4320
     atacggtcca gagtacatca agaaacgaga gacttatcca agaaataagt acagatatga      4380
     ttcaacagca gaaatagagc aacgtagagc gccaacagca ttactgatag cagctaaagg      4440
     caaagattgc gctgacctca tagctaacta cccgcaccac aattcgtatt tcaaaacagt      4500
     gagacatttc gcatggttga gtcgagccat caacaatcta aaaggaataa atgccaatac      4560
     gggcatgaat cacaagaggt caggccctct gactaaaatc gaactcgatc aaggcttgca      4620
     actcataatc aaaacgatgc aaaccactat ttacccgaat gaaatgggag aattaaacag      4680
     gaatggaacg atacctgcta aaggagcatt cgagcatatc aaagtcaagg tggaacgtgg      4740
     catactgcac attgcaggca ggctccaaaa tgctaacatg ccaaattcag agaaaaaccc      4800
     aatgttggtg ccaaagtcac acccattcgc acgagtaatt atcaagaata ttcacgaaat      4860
     gcgattccac gccggaacaa atatcgttat gagtgagttt cgattacaat tttggatgag      4920
     agatcttcgg cgcacagtgc aaggcgtcat acggcattgc gtctcatgtg cgcgagcgcg      4980
     gccaagaagg ctacaacaag aaatggggca actgccagcc ccaagagtca atcaatcagc      5040
     agcgttctct cacaccggag tggacttatg tggtccgttc gaagtattgc taaaccaacg      5100
     atcaaaatgc aagatcatcg catacgcttg catttttgtc tgcttcacta ctaaggcagt      5160
     gcacctagaa gtagtcgagg atcagtctgc atcagccttt atctcggctt tactcagatt      5220
     cacttcaatg cgaggagttc cagaggtcat atactccgat aatggacgga acttcgtagg      5280
     tgccagtagg gagctcaatc gcctacgaaa ggcttacaac aaccaaaact ttcaaaacaa      5340
     aattatcgac actgcagcga agagtgggat tcacttctca ttcattcccc cacgaagccc      5400
     aaactttgga gggctgtggg aatccaacat aaaggtagca aagagattgt tcagtgcagc      5460
     agctagagga gctcaactga atataatgga gcttcaaaca ctattttatc aggtggccgc      5520
     gattatgaat tcacgaccat tgaccgcagt atacgcagga acagaagctc caacaccatt      5580
     gacgccaggg cactttttga tcgcaaggcc catgcaggcc atacccatgc ccactcaacc      5640
     tgaaaatact gtcaacctca caacgaggtg gaaacgtgtg cagcatcaga cagaacaatt      5700
     ttggagaagg tggcacacag aatatcttca tcaacttcgc aattatgcaa aatggacgaa      5760
     acgacacgag aacgttaaag ttggccagat agtgctgatt ggcgatgaca acattcccgt      5820
     ggcgcgctgg cccatgggaa ttatcacaca agttcatccc ggcgaggatg gaatagttcg      5880
     cgtggcagtg gttcgaacct ctactggcac gtacaaacgc aacgttcgca cattggcgcc      5940
     tctaccaata gaagaggagc acgaatccac acacaaccag gagagtcaca gcgtcatcga      6000
     taaagacgtt acaattactc agcgagaaac ttcagagttc gaagatgaac ccccaccgca      6060
     agcaccacaa atgatttggg acggtcgcct acgcgctcgt cccaaagggg ggagaaaa        6118
//
ID   BEL-106_AA-LTR repbase;    DNA;    INV; 787 BP.
XX
AC   supercont1.254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-106_AA_;
KW   BEL-106_AA-I; BEL-106_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-787
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.254; Positions  385287  384501.
XX
SQ   Sequence 787 BP; 222 A; 223 C; 189 G; 153 T; 0 other;
     tggaagtagc caaactttca tccgggctaa accttggagc ccggcccaaa ttcaaaccaa        60
     aatctacttc tgatgtgtga cattgtcaca caaaaaacat acgaatgcag caccagcata       120
     aaatgtgctg ccaacggtcg caatcgtcgc gacaaagtcc atagcagtca gcaacatata       180
     tccggctggc cagcggtcac gaccgcgagg gtctaacgtg catcgatgtt cccgctgcat       240
     cagcaatgcc atacgctgcc catcaactat aaactgggca gcaaccaccc aagtcgcccc       300
     gagaaggaag acatcgttcg acatcgcaac acacctatcg caagaaattg gagatgtggc       360
     cattctcgga aagcagcccc gaagtcacgg tggagaacaa tatctccacc catacagtgg       420
     cagggtatac gatcgatgcc ctgttcatca tcgccgtgat catcaccgtc atcgtctggc       480
     gttggcggca aaacatgcgg cgcatccggt cgttggaggc agcgaccagg cgcagccaac       540
     tcaacgttta agcgggcgtc acccgacgcc gcttacgcag caatttaggt gctccaaccg       600
     gagcacatca aagttggtgc acccggcacc aaaggacgag cgaaagggaa gagtgcacac       660
     ggcactactg tgtacaacat aatcaaactc tgtaagattc tgaaatatat ttcgtcagtc       720
     tataagcgag cgcgaacggg tacagtcttt tttcttgaaa gaacggtccc cggtttgtgc       780
     accatca                                                                 787
//
ID   BEL-107_AA-I repbase;    DNA;    INV; 5245 BP.
XX
AC   AAGE02022366;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-107_AA_;
KW   BEL-107_AA-LTR; BEL-107_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022366; Positions  145940  140696.
XX
CC   'AAGTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           85..1689
FT                 /product="BEL-107_AA-I_1p"
FT                 /translation="MSSTPAKDPEKRLEIYSTPVGGRQQQKKKMAEESQAI
FT                 VLQRGAVKGKITRIRNVLFRYEQDGTIPDEFLLRTQLKTIDAAYDEFNLFQ
FT                 NKIYAILPSSAEEQEQKYIEFEDLYNDVRTRVCRLLGDVKREVNHQPQEGI
FT                 QEAPAPQPVRVQTTPSLHTPLPTFDGKPENWFKFKAIFMDVMNKHVGESDA
FT                 TKLYHLDKCLVGEASGTIDPQTINDGNFAAAMEHLTVRYEDKRKIVDIHVN
FT                 GVLNLKAMTCESGKQLRELVDECKRHVDALNFYEFEMDGLSDIMVVSILAS
FT                 KLDLETRKLWEGSIDHGDIPKYAEMIKFLTTRSQVLERIEPTSKPRKSNVT
FT                 SAAKIPPLKTLSLAASVDCRCNFCEQAHLNHQCSDYLKLNPKERYEKAKQA
FT                 GVCYNCLRKGHVTARCSSTRSCKACNKRHHSTLHMNPTPAGVVEQTATTVP
FT                 AAQSIDDSTKPTTTNTINASCTVYQQRALLCTALVNILDDSGKAQPCRVLL
FT                 DCRSLELYLRSTSIFLRGRYHLAYTSPILISIVHSAWTC"
FT   CDS           1996..4746
FT                 /product="BEL-107_AA-I_2p"
FT                 /translation="MLPFRDNVNQLGDSKQHAQQRFSYLEKKLSKNAELKA
FT                 AYCAFMEEYKQLGHCREIDPSEEEAGGFYLPHHAIQKPSSSTTKLRTVFDA
FT                 SAQSSSGLSLNDTLMVGQVVGPTIQDSLIDIALRFRTYAYVFTADISKMYR
FT                 MILVHADHTKYQRVFWRADPTEPLKTLELLTVTYGTASAPYLATRTLKQLA
FT                 QDEGHAHPRAAEILENDFYIDDVLSGADTLEELMLTRTDLEELLLNGGFEL
FT                 HKWCSNSAEFLGTIPEERREKRMSYEQDGVNDLIKTLGILWNPTSDQLLFR
FT                 ISPTDQTHPVSKRYILSEIAKSFDPLGLQAPVCVTAKLILRQLWRKNVSWD
FT                 EEVSQDIAESWNKFRGGLQALMNLQIERRVIAPKRIALELHAFSDASQDAY
FT                 GTCVYVRSILADNTVEVHLLISKSHLAPRATIPRLELCGFRLMSRLVVKVV
FT                 SALKVKFNRMVLYSDSTITLGWLSKSPSQLNTYVANRVAHIQELTPSSSYD
FT                 YKYVRTNANPADLVSRGLYPEALIENRFWWHGPEFLQNDSHDDEIMEEMTE
FT                 LPEVKVAALVTNNDYELEYNRIFMKFSSFRKLQRVIAYVIRFSNKTRNRAT
FT                 DGDHERYPTVSELRSSLLAIVRMTQQQRLRNDIQEIQKKQGTTDKYTGRLR
FT                 SLNPWIDSSGILRVNGRIKHANVAYDQRCPVILPSNHHVTDILIQATHLEN
FT                 LHIGLNGTLSVLRQRFWILNGRNVIRKQLQKCVRCFRVNPPETKLFMGDLP
FT                 RCRVTQALPFARTGVDFAGPIWVRKGHPRKPVYCKAYVALFVCMVTKCIHI
FT                 ELVSNLTTDAFIAALHRFVARRGIPVHMYSDNATNFAGSSSELHELYQLLH
FT                 QQLTKECIQGFCLPKEISWLHPSSFATRRRIVGSRRQVGEIPNQAHGWRHE
FT                 VNGRRMEHTINAD"
XX
SQ   Sequence 5245 BP; 1491 A; 1245 C; 1280 G; 1229 T; 0 other;
     ttttttggtc ctacatcgcc ggataatcga aaagtctcgg tcgcaattat cgataaagga        60
     cccgtcggtc gaatggacgc gtaaatgtca tcaacccccg cgaaagatcc ggaaaaaaga       120
     ttggaaattt acagcacgcc agtgggagga cgccagcagc agaaaaagaa aatggcggaa       180
     gaatcccagg cgattgtgct tcagcgcggc gccgttaaag gaaaaatcac tcgaatcaga       240
     aatgttttgt tccgatacga gcaagatggc acaataccgg atgaattcct gttgcgaacc       300
     cagttgaaga cgattgatgc tgcttacgac gaattcaacc tgttccagaa caaaatttac       360
     gcgattttgc ccagtagtgc agaggagcag gagcagaaat acatcgagtt tgaggacctg       420
     tacaacgatg ttcgaacgag ggtgtgccga ctgctgggtg acgtgaaacg agaggtgaat       480
     catcaaccgc aagagggtat ccaggaggca ccggcaccgc aaccagttcg agtacaaacg       540
     accccttcgc tccatacacc gttgcctaca ttcgacggga agccagaaaa ctggttcaaa       600
     ttcaaggcca tattcatgga tgttatgaat aagcacgtcg gagagtcaga tgctacgaag       660
     ctctatcacc tagacaagtg tttggtaggt gaagcttccg gaacgatcga tccacaaacg       720
     ataaacgacg gcaactttgc tgctgcgatg gagcatctga cagtacgcta cgaagataaa       780
     aggaagattg ttgacatcca cgtcaacggt gtacttaacc tcaaagcaat gacgtgcgaa       840
     agtggcaaac aacttcgtga actagtggat gaatgcaagc gacatgttga cgcactcaat       900
     ttctacgaat ttgaaatgga tggactatcg gacatcatgg tcgtcagtat tctggcgtcg       960
     aagcttgatc tggaaactag gaagctctgg gaaggcagca tcgatcacgg tgacatccca      1020
     aagtatgcag aaatgataaa gttcctgaca acacgaagtc aagttttgga gcgaatcgag      1080
     ccaacaagca agccaaggaa gtccaacgtc acttctgcag cgaagatccc tccattgaag      1140
     acattgtccc tggcggcatc ggttgactgt cggtgcaact tttgtgagca agctcatttg      1200
     aatcatcagt gcagcgatta tctgaaacta aacccaaagg aacgctacga aaaggcaaag      1260
     caagctggag tctgttacaa ctgcttgagg aaaggacacg tcactgcacg ctgttcttct      1320
     acgagatcgt gcaaggcctg caataaacga caccattcta ctctccacat gaatcccacg      1380
     ccggcgggtg tcgttgagca gacagctact acggtgccag cggcacaatc aattgacgac      1440
     tccacgaagc ctactacgac aaatacgatc aatgcttcct gcacagtcta ccagcaacgg      1500
     gctctgttat gcacagcact tgtgaacatt ctcgacgata gcggtaaggc gcagccatgt      1560
     cgcgttctac tagattgcag atcactggaa ttatacctgc gaagcacatc gatatttcta      1620
     cgtggccgat accatctggc ctacacctcg ccgatcctga tttccatcgt ccacagcgcg      1680
     tggacatgtt gataggagtc gggcactttt tcggtctcct gaaatctggt aagatgaagc      1740
     ttgctgagag cctgccgttt ttacaggaga caacgtttgg atgggtcgtc ggcggcatgg      1800
     ctgactacaa gttggaagta cgaagtgaat cactgcaaca ttgcggtcaa tgagggaaat      1860
     ttgaatgaac tcgttgaacg gttctgggag tccgaggcgg tgtctaccgc ttccagtctg      1920
     tcatcggaag aagcagcatg cgaacagttc tacgagcaga ctcacagtcg cgatgcaagc      1980
     ggccgctaca ccgtaatgtt acctttccgt gacaatgtga atcaactcgg cgattcgaag      2040
     cagcacgctc aacagcgatt ctcctacttg gagaaaaagc tgtcaaaaaa tgctgagcta      2100
     aaggcggcct actgtgcatt tatggaggaa tacaagcagc ttgggcactg ccgagaaatc      2160
     gatccgtctg aagaagaagc tggtgggttc tacttgcccc atcacgctat acaaaagcca      2220
     agttcatcta ccaccaagtt acggaccgtt tttgatgctt cggcacaatc gagttcaggg      2280
     ctctccttga atgatacttt gatggttggc caagtggttg gccctactat acaagattcg      2340
     ctcatcgata ttgctcttcg ttttcgaaca tatgcttatg tgttcacggc tgacatttct      2400
     aaaatgtacc gaatgatatt ggtgcacgct gaccacacca agtatcaacg cgtgttttgg      2460
     agggcagatc ccacagaacc actgaagaca ctcgagcttt tgactgtcac ttacgggaca      2520
     gcttcagcgc catatctagc tacccgcaca ttaaagcagt tagcccagga tgaaggccat      2580
     gctcaccctc gcgcagcaga aatactcgaa aacgattttt acatcgacga cgttctttcg      2640
     ggagctgata ccctggagga attgatgctg actcgtactg atttggagga actacttttg      2700
     aatggaggtt tcgagctaca caagtggtgc tccaattcag ccgaattcct tggcaccata      2760
     ccagaagaac gacgagagaa gcgaatgtca tatgagcagg acggcgttaa cgacctcatc      2820
     aagaccctcg gtatattatg gaaccctaca agcgatcaac tactatttcg catttctccc      2880
     actgaccaaa cgcatccggt ttcgaaacgc tacattttat cagaaattgc gaagtcgttt      2940
     gaccctctag gtctgcaagc accggtttgt gtcactgcta aactcatact gcgtcagctg      3000
     tggagaaaga atgtttcgtg ggatgaagag gtaagccagg acatagcaga aagctggaac      3060
     aagtttcgtg gtggtttaca agccctgatg aacctacaaa tcgaacgccg agtcatcgca      3120
     cccaaacgaa tcgctctaga gttgcacgca ttttcagacg cctctcaaga tgcttatggt      3180
     acatgtgtct atgtacgtag tattttggcg gacaatacag tggaggttca tctgctaatt      3240
     agcaaatcgc acttggcgcc gagagctaca atcccgagac tggaactgtg tggttttcgt      3300
     ttgatgtcaa gactagtggt caaggtcgtc tcagcgctca aggtgaaatt caatcgcatg      3360
     gtgttgtact cggattcgac tatcacttta gggtggttat caaagtcacc aagccaactc      3420
     aacacgtacg tagccaatcg agtggcgcat atacaagaat taacgccaag ttcatcctat      3480
     gattacaagt acgtacggac taacgctaac ccggcagatc tggtttcgcg aggactctac      3540
     cctgaagctc tgattgaaaa tcgattttgg tggcacggcc cagagtttct gcagaatgac      3600
     tctcacgatg atgaaataat ggaagaaatg actgaactgc ctgaggtcaa ggttgctgca      3660
     ttagtgacca ataacgacta tgagctggaa tacaacagaa tattcatgaa attcagttca      3720
     tttcgcaaat tgcaacgtgt gattgcttac gtgattcggt tttcgaataa gacaaggaac      3780
     cgagccactg acggagacca cgaaagatac ccaactgtga gcgagttacg ttcttcgttg      3840
     ctggctatcg ttcgcatgac tcaacaacaa cgactgcgaa acgatattca agaaattcaa      3900
     aagaagcagg gtactaccga caagtacact ggaagactac gaagcctcaa tccgtggatc      3960
     gacagcagcg gtatacttcg agtaaatgga cgaatcaaac atgcgaatgt ggcatatgat      4020
     caacggtgtc cggtaatatt gccgtccaac catcatgtca cagacatatt gatacaagct      4080
     acccacctgg aaaacttgca cattggacta aatggaactc tttcggtctt gcgacagcga      4140
     ttttggattc tgaatggccg aaatgtgatc cgtaagcaac tacagaaatg cgtgcgatgc      4200
     ttcagagtga atcctccgga gacaaagctt ttcatgggag acctacctcg ttgcagagtt      4260
     acacaagctc ttcccttcgc acgtacgggt gttgattttg ccgggccaat ctgggtacgc      4320
     aaaggccatc cacgcaaacc agtgtactgt aaggcatatg tagcattgtt tgtgtgcatg      4380
     gtcactaaat gcattcatat cgagcttgtg tcaaacctga cgacagacgc attcatagcc      4440
     gcattgcacc gatttgttgc acgccgcggc attccggtgc atatgtacag tgataatgcg      4500
     accaactttg ctggatcaag ctcggagctc cacgagttgt atcaactatt gcatcagcag      4560
     ctgacgaagg agtgtattca aggtttttgt cttcccaaag aaataagttg gcttcatccc      4620
     tcctcgttcg ccacacgtag gaggattgtg ggaagcaggc gtcaagtcgg cgaaatacct      4680
     aatcaagcgc acggctggag acacgaagtt aacggaagaa gaatggaaca cactattaac      4740
     gcagattgaa ggcatcctca attcgcgccc tttggtaccc cagacggcag accctgatga      4800
     ctacagtgtt attacacctg gacatttgtt gattggtcgt ccaatcacag cgattcccga      4860
     accagcatac gaccaactca agcatggaac cctctccaga tggcaacaca ttcagaaaat      4920
     gcgcgctgat ttctggaagc gttggtcagc gttttatctg tccgagttgc aacaacgccg      4980
     taaatggtcc aaacaacaca ccgagatcaa aattggggat ttggttctgc ttaaagagga      5040
     caacatccct ccacttcaat ggcgacttga cagagtggta catacccacc caggacagga      5100
     tggagtaaca cgtgtagtaa tggtgaagac atcagcagga gtgttcaaac gttcgaccgc      5160
     caacattgct gtactcccgc tggacgatgt ggtagttaag acggaagctg attgaatttc      5220
     ctggaaatcc aatggcgggg gagaa                                            5245
//
ID   BEL-107_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   AAGE02022366;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-107_AA_;
KW   BEL-107_AA-I; BEL-107_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022366; Positions  140695  140491.
XX
SQ   Sequence 205 BP; 53 A; 38 C; 39 G; 75 T; 0 other;
     tgtttggacg tattgattat aattcgaaga ttgatatttt gttcagtgtg tttgcgcttt        60
     caattttctt tttcttttta gcacacacac acattttctg taacagtcag tactagagag       120
     acggaacacg aataaagacg ttgttgaatt acagtccgcg cgttttcact cgtctctaaa       180
     gcaaagcgac tttttcggtt gcaca                                             205
//
ID   BEL-108_AA-I repbase;    DNA;    INV; 5898 BP.
XX
AC   AAGE02018277;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-108_AA_;
KW   BEL-108_AA-LTR; BEL-108_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5898
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018277; Positions   71062   76959.
XX
CC   Positions [5054-5515] - Integrase core
CC   'CCACC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(377..2383,2387..5050)
FT                 /product="BEL-108_AA-I_1p"
FT                 /translation="MLPWLRSETKTPTTVAHQPTNIESENTPRTPKTVVNK
FT                 FTNILPEPSDIVPSPTPTPIAEQKEAKKKKQEMKRMEEQLKGLVNQRVAVH
FT                 GKLARVRAALWDSDDQPNPNTKNIHFLQLHQKTVESCYHECNAIQNQIYVL
FT                 PLSEDRLAEHTESYVDFEALYNNVSIQLGMLMQAASIAEMSHAHAQGPPNS
FT                 AMPPVLPAQPYLPPLQVPLPTFDGSAEKWYSFKAMFTTIMDRYQQEEPALK
FT                 LFHLQKSLVGKAAGVIDQDLVNNNDYDAVWRVLAQRFEDRRVIVDKHVENL
FT                 FNLPKVGQENAENLRRMIDTCTKNVEALKHLNLPLNGLGEQMVINLIAGKM
FT                 DKKLRVAWEGRQKKNVLSTYDAMLEFLQEQCRIYEKLDTTMKPLTESAKYK
FT                 TVAKGHTLVSSETKNEKIEPKCPMCKANHELWKCDAFKNKSVGEKYELLKK
FT                 YGSCFNCLGRGHRTAACSSKQSCRECGKRHHTTLHVEESSRKASSSGITTK
FT                 SSEPSSTLVATPDVNQTTNTTAGSSTTLCASAENSEKQTLLSTAVVLVDGL
FT                 SSAAYPCRVLLDSASQMNFITERFANLLSMRTVPADVTVSGLNGNKTRISR
FT                 SLRTTIRSRHTDFATELDLLVTPRITGDLPVKSFDVSEWPIPIDKLLADPT
FT                 FNQRGRVDMLIGGILLESSSWPTPAWAKPSGSKEYEAGVDRWRSNRLRCGS
FT                 SRAHFCQTAEDEPLIELLKSFYKVEACDGIRLSHTADDEMCLDHFRRTHQR
FT                 TEEGRYVVQHPFNERKQELGDSRQMALKRFLNLERKLDNQPELKEQYSQFI
FT                 RDYEQLGHMRVVQEQPNEEPGSVYYLPHNCVLRPSSTTTKLRVVFDGSARS
FT                 STGVSINDVLMTGPTIQNDLIAILLRFRGFKYVFTLDIPKMFRQVGVHQQD
FT                 TKYQRIFWRYDKNDPLTVRELQTVTYGLGPSPFQATMALKQAAADHKEEFP
FT                 EAAKVIEKGTYMDDILTGADTLGGACQLQREVTGLLAKGCFGAHKWCANHA
FT                 DIVQAVPEELRGNSFMITDDNSNAVVKTLGVTWNPVEDWFSVSVPDYVDSE
FT                 GITRRKLLSQLAKIFDPLGFFGPVITTAKLILREVAELEIDWDDPVPSDVG
FT                 SKWRSFRNEMIVLKEVRMPRWISWNGLLKLELHGFADASDLAYGACLYARA
FT                 VFPDGSFQMRLISSKSHILPKKKGRKKLITTPRAELLAALLLAKLVTKLLD
FT                 ATELKFESTVVWSDSKIVLGWIRKPPHLLHTFVSNRVSEIQTLTPNCSWKY
FT                 IPTDENPADLISRGEQPRKLAESKMWWTGPPSFNCAVVEVVDEPMIPDEEL
FT                 PEMRSGAGVVLAITASIGRMPIFDRVSNFMKIVRYSAYFVRFAKYIMSRKR
FT                 VVKKGPLSADEIREATLLVVRLIQRETFQQEISALMDGEDVKHRLNGLRAF
FT                 LDPKDNILRVGGRIKRAFIPYNSRHQMLLPAKHPTTEALVRYLHLENLHIG
FT                 QKGLLAVVRQRYWPLNVKSTIRKVIRDCIPCFKANPLKTTQLMGDLSSYRI
FT                 QPAPTFSNTGVDYAGPFLIKSSTTARKPQLTKAYVSLFVCL"
XX
SQ   Sequence 5898 BP; 1623 A; 1404 C; 1542 G; 1329 T; 0 other;
     aagtggtcct tctagaaccg gatacgggaa aatcagtaac gatcgacgtg gttctcgtga        60
     aagttccgcg ataccgaaag aaaattcgag catcggttcg tgctgctgcc ggacgggtgc       120
     agctttgctc gtggcggtcg ctacaagtag aagaaaagtg aaggaatact cttcggagga       180
     ttcgtaatct ggtccgttcc aagacggata cgacgtcacg gcgttccgaa gcggaaaaac       240
     gaaaaaataa gtgctaaaag tgaaagttcc atcggctagg ctcaagcggt gtgctttttt       300
     tgcaaatggc ggatggcatc gaacaattat cggtgcgtga gtgcgattga aaaattgtgc       360
     gcgatcgaga cggaagatgt taccgtggct tagatcggaa acgaaaacgc caacgacggt       420
     cgcgcatcag ccaacgaaca ttgaatcgga aaatacaccg agaactccga agaccgtagt       480
     gaataaattc acgaacattt tgcctgagcc atcggacatt gtgccgtcgc ctacgcctac       540
     gccgattgct gaacaaaaag aagcaaagaa gaagaaacaa gaaatgaaaa ggatggagga       600
     gcagctcaag ggattggtca atcagagagt ggcggttcac gggaagctgg cccgtgttag       660
     agcagctttg tgggacagtg acgatcagcc gaatccgaac actaaaaaca ttcatttcct       720
     ccaactccat cagaaaacgg tggagagctg ttatcacgag tgcaatgcca tccagaacca       780
     gatctacgtg ctgccgctct ctgaagaccg tctagctgag cacaccgaga gctacgttga       840
     tttcgaggcg ttgtacaaca acgtttccat ccaattgggc atgctgatgc aggcggcgtc       900
     gatagccgag atgtcacatg ctcatgctca aggaccaccc aattctgcca tgccacctgt       960
     tttgccagca cagccctacc ttccaccgct ccaagtgcct ctaccgacct tcgatgggtc      1020
     agcagagaag tggtattcat tcaaggcgat gtttaccacg ataatggatc gataccagca      1080
     ggaggaaccg gcgctaaaac tgtttcacct gcagaaaagc ctcgtaggga aagcagctgg      1140
     cgtaatcgac caagatttgg tcaataataa tgactacgac gccgtatgga gggtgctcgc      1200
     ccagcggttt gaggacagac gagtcatagt cgacaaacac gtcgaaaatc tgttcaactt      1260
     accaaaggtt ggccaggaga acgcagagaa tttgcggaga atgattgaca cctgtaccaa      1320
     gaatgtggag gccttaaagc acctgaatct gccattgaat ggactcggag agcagatggt      1380
     aatcaatctc attgccggaa aaatggataa aaagcttcga gtggcttggg aaggtcggca      1440
     aaagaagaat gtgctttcaa catatgatgc gatgctggag ttcctgcaag agcagtgtcg      1500
     tatctacgag aagctcgaca caaccatgaa gccgttgacg gagagtgcta aatacaaaac      1560
     ggtggcaaaa ggccatacgt tagtgtcaag tgaaactaaa aatgagaaaa tcgaacctaa      1620
     gtgtccaatg tgcaaggcaa accatgaact ctggaagtgt gacgccttta aaaacaaaag      1680
     tgtcggtgag aagtacgaat tgctaaaaaa gtatggatcc tgtttcaact gcttgggaag      1740
     aggccaccga accgctgcgt gttcttcgaa gcagtcctgt cgcgagtgtg gcaagcgaca      1800
     ccacactacg ctccacgtcg aggagtcatc cagaaaggcc tctagcagtg gcatcactac      1860
     gaagtcatca gaaccttcat cgactctagt tgcgacacca gatgtgaacc agacgaccaa      1920
     tactacagca gggtcatcga caaccttgtg tgcaagtgct gagaattccg agaagcaaac      1980
     tttgctttcg actgccgttg tcttggtcga cggcttgagt agcgctgcat atccatgccg      2040
     agtgcttcta gactccgctt cccagatgaa tttcatcacg gagcgattcg cgaaccttct      2100
     ctcaatgaga acggtacctg ctgacgtcac agttagcggt ctgaacggca ataaaactcg      2160
     gattagccgt tcgttacgta cgacaatcag atctcgtcat acagatttcg caaccgagct      2220
     agatctgctg gtgacgcctc gaataactgg tgatctaccg gttaaatcat ttgacgtttc      2280
     ggagtggccc atcccaatcg acaagttgtt ggccgacccg acgttcaacc aacgaggtcg      2340
     tgtcgatatg cttatcggcg gaattctttt ggaatcttct agttgatggc caacaccagc      2400
     ttgggccaaa ccttccggct ctaaagaata cgaagctggg gtggatcgct ggaggagtaa      2460
     tcgcttgcga tgcggcagta gtcgcgcgca cttctgccag accgctgagg acgaaccact      2520
     catcgaactg cttaagagct tctacaaggt ggaagcatgc gacgggattc gcctttccca      2580
     tacggcggat gacgagatgt gcctggatca tttccggcga acacaccaac gaacagaaga      2640
     aggaagatac gttgtgcaac accccttcaa cgaacgcaag caagaactgg gagactcacg      2700
     tcagatggcg ttgaagcgct ttctgaatct ggaaaggaag ctggacaatc aaccggaatt      2760
     aaaggagcaa tattcgcagt tcatccgaga ctacgaacag ctcggacaca tgcgagtagt      2820
     acaggaacag ccaaacgagg aacctggatc ggtctactat ttacctcaca actgcgttct      2880
     gcgccccagc agtacgacga ccaagctgag agtcgtcttt gatggatccg ccagaagttc      2940
     cacaggcgta tcgattaacg atgtccttat gactggacct actatccaga acgatctaat      3000
     tgcgatcctg ctccgtttcc gagggtttaa gtacgtcttt acgctggata ttccgaagat      3060
     gtttcgccag gttggggttc atcaacagga caccaagtac caacgcatct tctggaggta      3120
     cgataaaaac gatccgctga cagtccgaga gttgcagacg gttacatacg gcctgggacc      3180
     ttcgccgttc caagcaacca tggcactcaa gcaagctgct gctgatcaca aggaagagtt      3240
     cccggaagcc gcaaaagtca tcgaaaaggg aacatatatg gacgacatcc tgacgggagc      3300
     tgatactctt ggtggagcat gccagctcca acgagaggta acaggtttgc tagcaaaggg      3360
     ctgctttggc gctcataaat ggtgtgccaa ccatgctgac atcgtgcaag ctgttcccga      3420
     agaacttcga ggaaactctt tcatgataac cgatgacaat tcgaatgcag tcgtgaagac      3480
     tttgggcgtc acttggaacc cggttgagga ttggttttct gtgtcggttc cggactatgt      3540
     cgactccgag ggaataactc gcagaaagct tctgagtcaa ctagccaaaa tatttgaccc      3600
     tctgggattc tttggaccag tgattacaac cgcgaagctg attttgcgtg aagttgctga      3660
     gttggagatt gattgggacg acccagttcc atccgatgtt ggctctaagt ggcggagttt      3720
     ccgaaacgaa atgatagtcc taaaggaagt gcggatgcca cgatggattt catggaacgg      3780
     tctgctcaag cttgaactgc atggatttgc tgacgcctcc gacttggcgt acggggcatg      3840
     tctttatgct cgggccgtct ttcctgatgg ttcattccag atgcgactga tttccagcaa      3900
     gagtcacatt ctaccgaaga agaaagggag aaagaaactc atcaccactc ctcgcgctga      3960
     actgctagcg gctttattgc tcgccaagct ggtaacgaag ctgctggatg ctacagaact      4020
     aaaatttgaa tcgacagttg tttggagtga ctcgaaaatc gtactggggt ggattcgaaa      4080
     acctcctcac ctgctacata cttttgtttc gaatcgggta agtgaaatcc aaacactaac      4140
     tccgaattgc agctggaaat atattcctac ggatgagaac ccggcggatc taatctcccg      4200
     gggtgaacag ccgaggaaac ttgccgaatc caagatgtgg tggactggtc caccttcatt      4260
     caattgcgct gtcgtcgagg tagtggatga acctatgatt ccggatgaag aactgccgga      4320
     aatgcgatct ggtgctggcg tagtactagc tataactgct tcaattggac gaatgccgat      4380
     ttttgacagg gtgagcaatt ttatgaagat tgtgcgctac tcggcctact tcgttcgctt      4440
     tgccaaatac atcatgtcta gaaaaagggt ggtgaagaaa ggtccgctat ctgccgacga      4500
     aattcgtgaa gcgacgctcc tggtagtacg gctgattcaa cgcgaaacgt tccaacagga      4560
     aattagcgct ctgatggacg gcgaggacgt taagcatcgg ctcaacggat tacgagcgtt      4620
     cttggatccg aaagataata ttctaagagt tggagggcgc atcaagcgag ccttcatacc      4680
     gtataatagt cgtcatcaga tgctgctgcc agcgaagcac ccaactactg aggcactcgt      4740
     ccggtatttg catttggaaa acctgcacat cgggcaaaaa ggattactcg cagtcgtacg      4800
     ccaacgatac tggccattga atgtgaaaag tacaattcgt aaggtaattc gagactgcat      4860
     accgtgcttc aaagccaacc ccttaaagac gacacagttg atgggcgatc tgtcgtcgta      4920
     tcgcattcag ccagctccta ccttctcgaa caccggtgtg gactatgctg gtcctttttt      4980
     gattaaatct tcgactacag ctcgcaaacc ccaacttacg aaggcctacg ttagcttgtt      5040
     cgtgtgtctg tagacccgtg ccatacatct ggaactagtt tccgatctga cgacggacgc      5100
     gtttctcgcg gctttgaggc gtttcgtcag caggcgtggg tgtccgaaat cgatgcactc      5160
     tgacaatgca acaaactttg ttggggctaa atcagagttg catgaactat ggctgatgtt      5220
     ccagaaccaa cgtgctaccg caagaatcac aacctactgc accaacaagg gaatcgactg      5280
     gaccttcata ccgccgcgaa gtccacactt tggcggtata tgggaggccg gtgtgaaaca      5340
     ggtaaagcat cacctcaagc ggattgtcgg cgaccggaag ctatcctacg aagaactgta      5400
     taccacgttg acgcaaattg aagctgtgct aaactctagg cccttggcgc caagctcgga      5460
     tgagcctagt gactacacag ctattacgcc tgctcacttc ctgatcgctc gagagatgca      5520
     agccgtaccc gaaccgagct acttgcatat gaaagagaac agactatcgc gatggcagtt      5580
     ggtgcagacc atgctgcagc gcttctggaa aaggtggaca gcggaatatc tgccagaact      5640
     tcagaataga tccaagtggt tgaaaacgaa ggaaatcaaa gagggttcac tggtgttgct      5700
     tgtggaccag aacatgccgc cgctacaatg gccactagga agaatcctga aaacgcaccc      5760
     tggaagtgac ggcgttgtgc gcgtcgtaac ggtgagaaca gcaaatggag cagagttcaa      5820
     gcgtgctgtg acggaggtct gtttgctgcc gtttgatcag gaagagtgtt gaaatccaga      5880
     tttcaacgcg ggggatga                                                    5898
//
ID   BEL-108_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   AAGE02018277;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-108_AA_;
KW   BEL-108_AA-I; BEL-108_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018277; Positions   70829   71061.
XX
SQ   Sequence 233 BP; 65 A; 59 C; 39 G; 70 T; 0 other;
     tgttcgccta cttgcgcatc cctaccacac accgtacgtg aacaacccta aaaagacaaa        60
     cacacacaca cattattgct tttttgattt ttctgttttt ttttttgcga aataaagacc       120
     agttgagttc tatagtcaag agtatcaaga cgcgttgttg cttggctacg gaaagaattt       180
     tcccgtcgtt atccgacccc ccaaatttac agtccgctcg atctgaagga aca              233
//
ID   BEL-109_AA-I repbase;    DNA;    INV; 5448 BP.
XX
AC   supercont1.257;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-109_AA_;
KW   BEL-109_AA-LTR; BEL-109_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5448
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.257; Positions  450600  456047.
XX
CC   'TACTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1175..4771
FT                 /product="BEL-109_AA-I_2p"
FT                 /translation="MSFKPFPKPQPRGALTYVATNAPFCDVCSNQQHNTYQ
FT                 CGKLLHMNPEARFALVNRIGLCVNCLKRHPEENCRSGMCRKCNLPHHTLLH
FT                 SAISPASIQAFDASVPASNSPGQPFQSLISALDSPANLDASNVLLATAAIN
FT                 VIDSRNRPRTCRAVLDSASQMSFITERCCNELGIRTRSACMDLEGISSVPT
FT                 RAHKCAEIVIASHCSDFRAVVSCIVLEKITNTLPCKPAHIGNWIIPESINL
FT                 ADPLFYRPGNIDVLLGSEIFFQLLQPGQLSLGANGTAPILQNTKLGWVVAG
FT                 RYDNVNPIPNSPVSTCLLISIDDELSKQLRRFWELEEYAALSKHLSEEELL
FT                 CEQHFCQYTNRDESGKFVVRLPFSQHPRNLGNSLQIAERRLYHIERKLERH
FT                 PRLKAEYHAFMREYLDLGHMSAVDNVTTHGLSVYLPHHCVVKETSSTTKCR
FT                 VVFDASAKTTSGLSLNDVFMCGPTIQDSLINILIRFRMPPIVLVGDVKQMY
FT                 RMIWVHEDDRDCLKILWRWNKEEAIKEYRLNTVTFGTKCASFLATRCVQQL
FT                 MESHRVQYPVAVEKVEKGIYVDDVLTGAETEEEARTLREQLTEMFKDGGFH
FT                 LRKWASNCPAVLEGVPEADLEVKINIEESESNVVKALGMQWQPCSEEFHFS
FT                 YQPNQILQPTKHMILSQIASLFDPLGLLAPVIVKAKLVMQRMWELKVAWDA
FT                 NPPGELTNEWLNFWQSFSLLNSFQIPRHVINVKNWSRLYMHGYCDASNVAM
FT                 GACVYIRAVNDKGDTSSHLLCAKSKLAPIGNGKTTIPRLELCAAVILARLI
FT                 TNVRSALSTTSFYEVRAFSDSKVVLAWLAAGASRWKTFVANRITEICSHLP
FT                 AINWFHVPTQDNPADLISRGAFPEHIKTNVFWWFGPEWDPSTSETSALVCA
FT                 FNTNEQRQIEREHRTTAVALAVVHENRFLDGLMSRYYPKLKLLLRITARLL
FT                 RVGHPEFRSTHRLSPDEINYAQRIFVRHTQQQHFCKDISRLQRGLPVERSS
FT                 SLHQLHPFLDEYGLVRVGGRLQQSDLSYDNKHPILLPTHSIFTSFVLLDEH
FT                 HEKLHCGPQLLLAASRKQYWIIRGCSAARKVYRDCVTCSRIKPVPLTQQMG
FT                 QLPADRLKPLPPFTITGVDYAGPVSIIGRKCRAAVPSKGYIALFVCLGTRT
FT                 AVDMGYLAKCTPTMLQIFERQQRSYANFISKLAPPSTVMK"
XX
SQ   Sequence 5448 BP; 1490 A; 1267 C; 1273 G; 1418 T; 0 other;
     tatggtcctt cgagccggat cgcgaaaata tcgtcgcgag ccgaaatatc taatatatat        60
     catcagtgcc cacgaattga caccgtcgca gtcgtgctcc tgtcaatcgg cgaaggtgat       120
     atttataaga agtgtgtgat ccagagaaaa gacttcgaac aataagtgcg cgaaatccat       180
     aacaatggat aaacttatcc gcgaacgaaa gtcactagag ccgcgtttga aacgaatcgc       240
     cgagactgcg gtcaaaatca agcctttaga agctgaagaa gtggatgtcc aaattgagtt       300
     ggatgcattg cgtgaagttt gggcttctta tgcaacgttg tacaaacgga ttatcagtgc       360
     atgtgaaaat gatgttgagt acgatgaggc cgttagccat caagcaaaat tctaagagca       420
     ctacagtacc gcgaaaaatc ggcttttgaa aactttgaaa gccatcaaag ggcgggaaga       480
     cagtacggtt gttcagcagg cgtctcatga cgtcatcaag caactcgctg atcaacaggc       540
     agaattttta cgaataatgt ctgcaaacat gacctcgtca gcaaacaata gcgctaccgc       600
     atctccgcta tcggacctga agctacctcg aatgaatttg ccaatcttta gtggtaacta       660
     cctcgagtgg cagtctttct tcgacttgtt tgagagtttg gtggatgcaa atccttcatt       720
     gaaggacagt caaaaactct attttttgaa gacaaatctc gatggtgaag ctgcgtcgtt       780
     aatctcccat ctcaaaatcg aagacgctaa ttatcaaacc gctttggaca aactcaaatc       840
     aagatacgac aagccgagag aaatcgctaa caaacacatt cagcgatttt taactcagca       900
     aacgttgacg tcagcatcag caaatggtct acgatcgtta cacgacgtat cggatgaagt       960
     tatccgagcg ctccaagcca tgaatcgaga ggatcgtgat acgtggctac tattcatcct      1020
     ctcagaaaag gtggatcctg ataccaaaca attatggtgc cagaagattt cagaaatgta      1080
     ggattctgac atcaccttgc aatgtttcct caaatttatc gaatcgagaa gcttcgcgct      1140
     tcaatcatct caacctgcta gaccaagaac cggtatgtcg ttcaagccgt ttcccaaacc      1200
     tcagcctaga ggggcattga cttacgtcgc cacgaacgct ccgttttgcg acgtttgttc      1260
     aaatcaacaa cataacacct atcagtgtgg aaagctcctt cacatgaacc ctgaagctcg      1320
     atttgccctg gtcaacagga taggtttgtg tgtaaattgt ctcaaaaggc atccggaaga      1380
     aaattgccga tcaggtatgt gtagaaaatg taacttaccg caccacacgt tactacattc      1440
     tgccatatca ccagcgagca tacaagcctt cgatgcgtct gtgccagctt ctaatagtcc      1500
     aggacagcca tttcagtcct tgatttcggc gctggactct cctgccaacc tcgatgcgtc      1560
     caatgttctc ctcgctacgg ctgctatcaa cgttatcgac agtcgcaacc gaccacgcac      1620
     ttgtcgtgcc gttttagaca gtgcctcaca aatgagtttc attacagaga gatgttgtaa      1680
     cgaactcggc atccgaacgc gatcggcatg tatggatctc gaaggcatat catctgtacc      1740
     aactcgagca cacaagtgcg ccgaaatcgt tattgcttcc cattgttcag actttcgagc      1800
     ggtggtatct tgtatagtat tagagaaaat tactaacacg cttccctgca agccagcaca      1860
     tattggcaat tggataattc ccgaatccat caatcttgct gatccgctct tctaccgccc      1920
     tggaaacatc gatgttctac taggtagtga aattttcttt caactactac aaccgggtca      1980
     actctctctc ggtgccaacg gtaccgcacc aatacttcaa aacaccaagc ttggttgggt      2040
     tgttgcgggt cgatatgata atgtgaatcc aataccgaat tcccctgtgt caacatgtct      2100
     gttgatatct attgatgatg aactatccaa gcaattacgt agattttggg aactggaaga      2160
     gtatgcagcg ctgtccaaac atctctcgga agaagagctg ctctgtgagc agcatttttg      2220
     tcagtatacc aatcgtgacg aatcaggtaa attcgtggtt aggctccctt tctcacagca      2280
     tccgagaaac ctcgggaact cactacaaat tgctgagcgg agattgtacc atattgagcg      2340
     aaaactcgaa cgacatccac ggttgaaagc tgagtaccac gcgttcatgc gtgaatacct      2400
     cgatctcgga cacatgtctg ccgtagataa tgtcacaaca cacggccttt cggtatacct      2460
     accacaccac tgcgtggtta aagaaacaag ctccaccact aagtgccgtg ttgtcttcga      2520
     tgcttcggcg aaaacaacta gcgggctatc attgaatgac gttttcatgt gtggaccaac      2580
     tattcaggat tcgttgatca acattttaat acgattccgc atgccaccga tcgtccttgt      2640
     aggcgacgtc aaacagatgt atcgtatgat ttgggttcac gaagatgatc gtgactgcct      2700
     gaagatttta tggcgatgga ataaggagga ggctataaag gaataccgat tgaacaccgt      2760
     cacattcggc acgaaatgcg catccttttt ggctaccagg tgtgtgcagc aattgatgga      2820
     gtctcacaga gtgcaatatc cagtggccgt cgaaaaggtg gaaaaaggaa tctacgtgga      2880
     cgatgttttg accggtgctg agactgaaga ggaagcaagg actttgaggg aacagttgac      2940
     agagatgttc aaggacggtg gatttcattt gaggaagtgg gcttccaact gcccagcggt      3000
     tttggaagga gttcctgagg cagatttgga agtgaaaatt aatattgaag aaagtgaaag      3060
     caacgtggtg aaggctctcg gaatgcaatg gcagccgtgc agtgaagagt tccacttttc      3120
     gtaccagcca aaccagatcc ttcagcccac aaagcacatg atcctgtcac aaattgccag      3180
     cctttttgat ccactaggct tgctcgctcc ggtcatcgtg aaggcaaagt tagtgatgca      3240
     gcgcatgtgg gagctgaagg tggcctggga tgcaaatcct cctggtgagt taaccaatga      3300
     gtggttgaat ttttggcaaa gtttctcgct tttgaattct ttccagatcc ctcgccatgt      3360
     gatcaacgtg aagaactggt ctcgtctcta catgcacggc tactgcgatg cttccaatgt      3420
     ggcgatgggc gcgtgtgtgt acattcgcgc cgtcaacgac aaaggcgata cctcatcaca      3480
     cctgctgtgt gccaaatcga aattggcccc cattggcaac ggtaaaacaa ctataccccg      3540
     attggaatta tgcgctgcgg tcattctggc acgattgata acaaatgttc ggtcggctct      3600
     ctccacgaca agtttctacg aggtgcgggc tttctctgac tccaaagttg ttctggcttg      3660
     gcttgctgct ggtgcttcaa ggtggaaaac atttgtcgca aatcgcatta ccgagatatg      3720
     ttcacacttg cccgctataa actggtttca cgttcccact caggataacc cggccgattt      3780
     gatctcgcga ggagcatttc cagaacatat aaaaacaaat gttttttggt ggtttggacc      3840
     agaatgggat ccgagcacaa gcgaaacatc tgctttagta tgcgctttca acaccaatga      3900
     acaacggcaa attgaaagag agcaccgtac gacggccgta gctttggcag ttgtgcatga      3960
     aaatcgcttc ttggatggtc tgatgtcgcg atactatccc aaactcaaac tactattgcg      4020
     gatcacagca cgattgcttc gtgttggtca tcctgagttt cgtagcactc accgcctctc      4080
     tccagatgaa atcaactacg ctcagcgaat cttcgtgcga catacacaac aacaacattt      4140
     ctgcaaagat atcagccgtc tacagcgtgg tctccctgtc gaacgaagca gttcacttca      4200
     ccagctccat ccatttttgg atgaatacgg tctcgtcagg gtgggcggtc gactacagca      4260
     gtcagatttg agttatgata acaagcatcc gattttgtta cccacacact caattttcac      4320
     gtcctttgtt ctgttggatg agcatcacga aaagctacat tgtggacctc agttgttgct      4380
     tgcggcttca agaaagcagt attggattat acgcggttgc agtgcggcac gtaaggtgta      4440
     tcgtgattgt gttacgtgca gcagaatcaa accagtgcca ctaacccaac agatgggtca      4500
     actaccagct gatcgtttga agcctcttcc accatttacg attactggcg tagattatgc      4560
     cggtccagtg agcatcattg gtcgaaaatg tcgggctgcg gttccatcga agggttatat      4620
     cgctctgttt gtgtgcctag gaactcgaac tgctgtagat atggggtacc tagcaaaatg      4680
     tactccgaca atgcttcaaa ttttcgagcg tcagcaaaga tcttacgcga actttatcag      4740
     caaattagca ccaccgagca cagtaatgaa gtaagcgatt atttggccga taaaggagtg      4800
     gagtggttgt ttattccggc tcgatcaccg catcaaggag gattgtggga ggcagctatt      4860
     aaggttgcta aaagattgtt aagtcggatt ggagataatt acaagtacac tttcgaggaa      4920
     ctaagtacga ttttatcgca agttgctgcg tgcatgaaca cacgtccgat ttcagcaatc      4980
     tctattgacc caacggatcc gcaacccttg actcctgccc attttttaat tggacgtcct      5040
     cttgatgctt tgccagaaat caaccatctt gatctgcatg ttggctcact gtccaggtgg      5100
     gcttacgtgc aacgtgtttc acaggacttc agatcgagat ggcagaccga atatgtggga      5160
     ggacttcaaa ggtccttgaa atggaatagt gtatctccga atctcaaaca aggcgacttc      5220
     gtgcttcttg tagatgacag ccagaaatgc caccaatggc caatccgacg tatattggaa      5280
     ctgttccctg gatcggatgg actagtaaga gtggtttcgg ttaaaacatc gaagggaata      5340
     tttcgccggg acatcaggaa acttcgtcga tgtcccttgg acagcgatga gtacgttgca      5400
     ggcaggaatg ggactgaaat tactgcccgt aatttggtgg gcggatta                   5448
//
ID   BEL-109_AA-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   supercont1.257;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-109_AA_;
KW   BEL-109_AA-I; BEL-109_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.257; Positions  450295  450599.
XX
SQ   Sequence 305 BP; 86 A; 79 C; 54 G; 86 T; 0 other;
     tgttcgagcg agaataggga gccaccctat cagcttcgat ccaaagtgat ctaaacgtag        60
     tcgccgatat gaaggtgagc tctgatacca aaaacggcag aatctctctc tctctccctg       120
     attctctatt ttatttgaat acatgtccaa ccttataaaa gcctatacaa agaactaaga       180
     ataaccagta tcaattgaat tagcaacaag cgcgttttat tctaatcgtt ctcggaaagt       240
     ttcccgttcg cctcctgttg agcatccgcc tcgttaaggt cttccttttg gaccccgcac       300
     caaca                                                                   305
//
ID   BEL-10B_AnFu-I repbase;    DNA;    INV; 3928 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-10B_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3928
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 754-754 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It has an internal deletion around
CC   its RNH-coding region.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..3910
FT                 /product="BEL-10B_AnFu-I_1p"
FT                 /note="PHD-fingers, DUF1759, retropepsin, reverse
FT                 transcriptase (partial), integrase (partial), and
FT                 DUF5641."
FT                 /translation="METSTMENQQPCTICNAVTTDKMVACDACNDWFHLGC
FT                 VNEDETVFNREWLCRVCKPNPNEESIAASPAVGSQPATMKEISRLFEEIKA
FT                 CMEKCNAPQSSSSIDETCDACNQSSRGVMVKCDECARKIHLTCIENDETTH
FT                 GRGWKCSKCASQPVPIQSSTIVTIMERLSAMERKMETNRSRVEPRAAYGFP
FT                 HPCSTVYDHTHFTNEGELTRSQASARKVVSGKLPIFSGDPDEWDMFFASFE
FT                 ESTRLCGYSDGENMQRLREALKGHALKAVKRRLYYGDNLPEVLETLKTMYG
FT                 RPELVIGTLLDKIRHAPLPKMEKLETLVEYGLEVEEICATVRKSGVENTYD
FT                 GPLLEELVARLPAVLRLNWGMHCETLPSTTLAQFAQWMTKVRNGALRVSPR
FT                 STLREEKRVLKHVNVHSQNQTTTQPRQKVVVTSPAQAESSQGGSRKCACDE
FT                 ECNRLTECDAFLRMSAENRWKYVTEHHVCKCCLRRHQSQCRLQQSCGKVGC
FT                 SKKHHTLLHSYHSEERAGKYETNNSHFSETDREVLLRYVPVTLRGPGQEVN
FT                 VIALLDEGSSVSLMEHALAKKLGISGKPKPLSLSWTGGQQRDEPESIEVSI
FT                 NISGIGEQDRQFEVPAIRTVRNLGLPTQSLDMDQFGEKYHHLSQLPIPSFD
FT                 AAAPRILLGIDNYHLTRPLKTVEGYIDEPVATKTRLGWVVSGRCDVNRHVP
FT                 GRPEIISSHRARLRDCRDTEVRSDNALKGQLSLEEPRGVSHEVIRSKDDEQ
FT                 ALELLSNKTKLTGGRYTTGLLWQYDDTVLPKGRSLALKRMECLEQKMNRDK
FT                 NRRDVMNTKMKEGYVRLLNPVEKLSNYSQAWVLQRFRERRIVIAANISEMY
FT                 HQVCINDEDLQSQRFLGKWSNEQAEPDDYITLRMTFGASFSPRCALYVKNV
FT                 NRNRFREQYPEAAECITNYLTLEPSSTPNKVLGMWWGVLFTCLTVLAIHIK
FT                 TVPSLSTSSCIIAIRNFIAHRGTPVEILSDRGTEFVGASSDLREALKEVNM
FT                 NEMIETMALPDTKWSFNPPAAPHFGGAWQRLVQTVKQTLRNIEFTRQPTDA
FT                 ILNSWLIEVEHIVNARPLTDVPVDSEEDAPITPNHFLLGSSAGVKPFVTLD
FT                 DSPDTIRNNWKTSQIYANMFWRKWVAAYLPTLTRRTRWYQPREPLKEGDVV
FT                 LIIDENLPRGCWPKGRIIRAIQSKDGAVRRVHVRLATGKTCERPAVKVAAI
FT                 DIDQRGSVSTS"
XX
SQ   Sequence 3928 BP; 1130 A; 944 C; 1030 G; 824 T; 0 other;
     ttttaaaaaa tttaactcaa tttacccagt tcggtagcct tcttgtgtcc ttacgagtgg        60
     aagctatttg ccacacatac gatagaagta cggacaattt cattcttgag gaaagtcgga       120
     agaaattaca atcgcgtttt ctgtgcgtag tgtgcgttgc tggttaccgc gattcgagtg       180
     attataagat tcctgaggaa attcggaaca tttactaatc gcggaacgct cgtgaaaacg       240
     gacaaaaatg gagacttcaa cgatggagaa ccaacagcct tgcacgatct gtaatgctgt       300
     tacgaccgat aaaatggtcg cgtgcgacgc ttgcaacgac tggttccacc tcgggtgcgt       360
     aaacgaggat gaaaccgtgt ttaatcgcga gtggctgtgc agggtttgta aaccaaaccc       420
     aaacgaggaa agtatagcag cgtccccagc ggttggaagc cagccagcca cgatgaagga       480
     gatcagccgg ctgttcgaag agatcaaggc gtgcatggaa aagtgtaacg ccccgcagag       540
     cagcagttcg atcgacgaaa cgtgcgacgc gtgcaaccaa tccagcaggg gtgtgatggt       600
     gaaatgtgat gagtgtgctc ggaagatcca tctaacgtgc atcgaaaacg acgaaaccac       660
     gcatggaaga ggatggaagt gctccaagtg cgcgtctcag ccggtgccca ttcagtctag       720
     tacgatcgtc accataatgg agagactgtc ggccatggaa cgaaagatgg agacgaaccg       780
     cagcagagtt gaaccacgtg cggcgtatgg atttccgcac ccttgttcta ccgtgtacga       840
     ccacactcac ttcaccaacg aaggagagct gacgcggagc caggcttccg caagaaaggt       900
     agtaagtggt aagctgccta tcttttcagg tgatcccgat gaatgggata tgtttttcgc       960
     atcatttgag gaatcaaccc ggctttgcgg ctatagtgat ggggaaaata tgcaacgctt      1020
     gcgagaagcg ttgaaaggcc acgcgttgaa ggccgtgaag cgccgtctct actacggaga      1080
     caacctgcct gaggttctcg agacgctgaa aacaatgtac ggtcgaccag agctcgttat      1140
     cggcacgctt ctcgataaaa tccgccatgc accgttacct aaaatggaga agctagagac      1200
     tctagttgaa tatgggctcg aagtagagga aatctgtgca acagtcagga aaagtggcgt      1260
     ggaaaacacg tatgatggtc ctctgctcga ggaattggta gctcgcctcc cagcggtact      1320
     tcgtctgaac tggggtatgc actgcgaaac ccttccgagc accactctgg cacagtttgc      1380
     gcaatggatg acgaaggtga gaaacggagc gttaagagta agtcctagat ccactttgcg      1440
     tgaggagaag cgggtcctga aacacgtcaa cgttcactcg caaaatcaaa caacgactca      1500
     gcctcgacag aaagttgtgg tgacgagtcc agctcaagct gaatcgagcc aaggcggttc      1560
     gagaaaatgt gcgtgcgatg aagagtgcaa ccgtctgacc gaatgtgatg cattcctgcg      1620
     catgagtgca gagaatcgct ggaagtacgt cacagagcat cacgtgtgta agtgctgcct      1680
     acgacgacat caaagccagt gccgactaca acaatcctgc ggaaaggtcg gatgctcgaa      1740
     aaagcaccac acactactcc acagctacca cagcgaagaa cgggctggca agtacgaaac      1800
     gaacaattct catttttcag aaacggatcg cgaggtgttg ctccgatacg ttcctgttac      1860
     gctacgaggc cccggccaag aggtgaacgt gatcgcgctg ctagatgaag gatcgtcggt      1920
     tagcctgatg gaacacgccc tagccaagaa gctcggcata agcggcaagc cgaaacctct      1980
     ttcccttagc tggaccggag gccagcaacg cgacgagccg gagtccattg aggtcagcat      2040
     caacatttcg ggcattggag aacaagaccg tcagtttgag gtcccagcaa ttcgcacggt      2100
     ccgtaattta gggttgccta ctcagagcct tgatatggat cagtttgggg aaaaatatca      2160
     ccatctgtct cagttgccaa taccatcgtt tgatgctgca gcaccacgga ttttattagg      2220
     tatagataac tatcatctaa cccgtcctct taaaaccgta gaaggctata tcgatgaacc      2280
     ggtcgccaca aaaacgcgcc tcggatgggt ggtatccgga cgatgtgacg taaacagaca      2340
     tgttccaggg agacccgaaa tcatatcatc gcaccgagcg cggcttcgtg actgccgtga      2400
     taccgaggta agaagcgata acgctttaaa gggccagctt tccctagaag aacctcgggg      2460
     tgtatctcac gaggtcatcc ggtccaaaga cgatgaacaa gccttggaac tgctaagcaa      2520
     caaaacaaaa ctaacggggg gtagatacac tacggggtta ttatggcaat atgacgacac      2580
     agttcttcca aaaggccgat ccctagcatt gaagagaatg gaatgcctcg agcagaagat      2640
     gaatagggac aaaaatcgcc gtgacgtcat gaataccaaa atgaaggagg gctacgtccg      2700
     cttgctaaac cctgtagaaa agctttcgaa ctattcacag gcatgggtcc tgcaacgttt      2760
     tcgtgaacga agaattgtga tcgcagcaaa catctctgag atgtatcacc aggtctgtat      2820
     caatgacgaa gaccttcaaa gccaacgatt tcttggcaaa tggagtaacg agcaagccga      2880
     accggatgac tacattacgc ttcgaatgac cttcggagca tccttttcgc caagatgtgc      2940
     tctatacgtg aagaacgtca acaggaatcg attcagagaa caatacccgg aagcagcgga      3000
     atgcataaca aattacctca ccttggagcc cagttcaaca ccaaataagg ttctaggcat      3060
     gtggtgggga gtactgttta cctgcctcac ggtgctcgcg atacacatca aaacagtccc      3120
     ctcattgtcg accagttcgt gcatcatagc gatacgaaac ttcattgctc atcgcggaac      3180
     gccagtcgaa atcttgtctg atagagggac tgaatttgtc ggtgcaagta gtgatcttcg      3240
     agaggcccta aaagaggtaa acatgaatga gatgatcgaa acgatggcct taccggacac      3300
     aaaatggagc ttcaatccgc cagcggcacc gcatttcggg ggggcttggc aacgactagt      3360
     ccagacggta aaacaaactc tacgcaatat cgagtttacg aggcaaccga cggacgctat      3420
     attgaacagc tggctgatcg aagtcgagca catcgtgaac gctcgtccgt tgacggatgt      3480
     gccagttgat agtgaggaag atgccccaat aacacctaat cactttcttt tagggtcgtc      3540
     ggctggagta aaacccttcg ttacacttga cgactcacca gatacgatac gcaacaattg      3600
     gaaaacgtcg caaatctacg ccaacatgtt ttggcgaaaa tgggtagcag cctaccttcc      3660
     tacccttacc cgaaggacga ggtggtacca gccacgtgaa ccactgaaag aaggagacgt      3720
     agtcctgatc atcgacgaaa atctgccacg aggttgttgg cccaaaggtc ggataatccg      3780
     cgcgatacaa tccaaagacg gagcagttcg gcgagtacat gtgcgtttgg caaccggaaa      3840
     aacatgcgaa cgaccggctg ttaaagtagc agctatcgac atcgaccaac gaggaagtgt      3900
     ttcaacaagc tgaaacactg ggggccag                                         3928
//
ID   BEL-10B_AnFu-LTR repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10B_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-343
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 756-756 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs. The consensus is ~94%
CC   identical to that of BEL-10_AnFu-LTR.
XX
SQ   Sequence 343 BP; 106 A; 68 C; 90 G; 79 T; 0 other;
     tgttgacaaa agcaacgtcg atgacgattg acaggagggt gacagccgtg cgcgtgaaac        60
     gagcccgatt taccaaaccc gagtgcgcct gccggtatgc actcaggaag atgagtgcta       120
     tgtcgatgac cgacaggcga aggcgatgac cgaggcgatg agcgggcgcg aacgaaaata       180
     gcagtttgta gcaaagaaac aaccgacaga agaacacgtt aaatttttta attttctgct       240
     tctgctctta tctcaaaaca atttgtaaaa gtagtaatag gaagaatatt aaaaagcgcg       300
     aattcgtagt cggattattt gttgccctgt tgcgtttgca aca                         343
//
ID   BEL-10_AA-I repbase;    DNA;    INV; 2938 BP.
XX
AC   supercont1.13;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_AA_;
KW   BEL-10_AA-LTR; BEL-10_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2938
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.13; Positions 1060869 1063806.
XX
CC   'ACAG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..2849
FT                 /product="BEL-10_AA-I_1p"
FT                 /translation="MQQDRTPKSRSVAEAAAEAAKSNKREAVFHDQTAEWK
FT                 FSDDPITLKELSSLCRQRDQVSLKLVRVRRALGTAHHQINQSLLRTYLKNA
FT                 DDAYTEFSTVHSKIIAIIPDEAFRQEEKQYIAFEERYRQIRTTIDELMLAS
FT                 EVEPARVPDPKPQVIIQQQPLKAPIPTFDGSYANWPKFKAIFQDLMANSPD
FT                 SDAIKLYHLDKALVGEAAGALDAKVIREGNYQQAWAILTNRYENKRIIVET
FT                 HIRDLFDIKRMSSGSSKELRRLLDECIRHVESLKYLNQEFSGVSDLFLVYI
FT                 VTSAMDNATRMAWEATQRKGELPQYSQTISFLEARHQMLENCENAFQSSSQ
FT                 YFSDPSLKPSQSCTKTSNICTATTERPKKYICDFCRGPHRNFQCYILASLP
FT                 FDRRMDKVRKTGACFNCLRKGHSFRECSSSKACQKCQKRHHTQLHREKMSQ
FT                 DPNPNFSDPARPDHTQDRVSRQAHVEENSNNSLTCNHADCCKIVFMPTAVV
FT                 DVLDTKGQSHRCRVLLDSGSQVNLISSDLANRLGVSRQPTKVPLRGINDIK
FT                 SMVQETVVVNFRSRITNYRASVEFLITPTVTSSIPSAGTDASTWRFPSGVC
FT                 LADPDFHKPNKIDLLLGIELFFELLQRGHIKIDEDYPELRETQLGWVVTGV
FT                 LKNRSVIEEIQNSFTTYVHHSSRPRRRREQFEENTNIDPEPIHYNMYMRHD
FT                 DRPVAVLTTSQTVMRQDDKKSISSIVSDPPSPIENHRIYPTSSAQRIGIDV
FT                 PSSDSVVHQREIPSSMPLNYRVNRGEYVPYGTSVPNHCRSSMKNNDTHSIV
FT                 TEAHDELTLSMT"
XX
SQ   Sequence 2938 BP; 839 A; 764 C; 678 G; 657 T; 0 other;
     acatagtggt ccttcgagcc ggatccagcg ccgctcaccg taggaaagta ttcgacacat        60
     ccgctcgtcg tgacgagata atccgacacg ttagcgtggc tttagccagg acgtgtatta       120
     cagagaggtc tactaatcac catcgccgtc cgacacgtct tcgtggtacc tataccggga       180
     cgtgtattag tgaaggaatt gttcacatcg tcactcgcta cgaatcccaa actgttctga       240
     accacaacga ataacaccag gaggaatcgc ccaccgatta tccgacctga aattcaaccc       300
     gacgaagtag tgtgaagcca aatcgagtcc gacgcttctt tctccaggaa tcactgttat       360
     cgtttcgact caacagttac ccgctaattg aggatcgctt cggagccatg cagcaagatc       420
     gtacgccgaa gtccagatca gttgctgagg ccgcagctga agccgctaaa tcgaataaac       480
     gagaagccgt tttccatgac caaactgccg aatggaaatt ttccgatgac cccattacac       540
     tcaaggagct gtcgtcactt tgccgccaga gagaccaggt gagccttaag ctagtacgag       600
     tccgaagggc acttggtacc gcccatcacc aaatcaacca gtcgctattg aggacatatt       660
     tgaagaacgc cgatgatgcc tacaccgaat tcagcaccgt acatagcaag ataattgcaa       720
     tcattcccga tgaggctttt cgacaggaag aaaagcagta cattgcattt gaggagcgtt       780
     accgtcagat ccggacaacc attgatgagc taatgcttgc cagcgaagtg gagcctgcca       840
     gagttcctga cccaaagcca caagtcataa ttcaacagca accattgaag gctccgatcc       900
     ccaccttcga tgggtcctac gccaactggc cgaagttcaa ggccatattt caggacttga       960
     tggccaactc gccagattcg gatgccatca agttatacca tctcgacaag gcacttgttg      1020
     gtgaagctgc aggagctctg gatgcgaagg tgatccgcga gggaaattac cagcaagcat      1080
     gggctattct cacgaaccgc tatgagaaca agcgaatcat cgtagagacg cacatccgcg      1140
     atctgtttga tattaagcga atgtcatcag ggtcgtccaa ggagttgcga cgcttactcg      1200
     acgaatgtat ccgccacgta gagagcctga agtatctcaa ccaggagttt tcaggtgttt      1260
     ccgacctgtt tctcgtctac atcgtgacgt ccgctatgga taacgctact aggatggctt      1320
     gggaagcaac ccagaggaaa ggcgaactac cccagtattc gcaaaccatt tcgttccttg      1380
     aagcgcgaca ccaaatgttg gagaactgtg aaaacgcttt ccagtctagc tcacagtatt      1440
     tttccgaccc gagtttgaag ccttcccaat cgtgtacaaa aacttccaat atttgcaccg      1500
     ctacaaccga acgacccaag aagtatatct gtgatttctg ccgaggacct caccgcaact      1560
     tccagtgtta tatactagca tcgctgcctt ttgaccgaag gatggacaag gtaaggaaga      1620
     ctggagcatg cttcaactgt ctccgaaaag gacactcgtt cagagagtgc tcatcttcaa      1680
     aagcgtgtca gaaatgtcaa aagcgacatc acacccaatt gcatagggaa aagatgagcc      1740
     aagatccgaa ccccaacttt tccgatccag ctcgaccaga tcacacacaa gaccgagtat      1800
     ccagacaggc ccatgtagaa gagaactcga acaattcact gacctgcaat cacgccgact      1860
     gctgtaagat tgtatttatg ccaaccgctg ttgtagatgt gcttgatacg aaaggccaat      1920
     cgcaccgatg ccgtgttctg ctggatagtg gctcacaagt gaaccttatt tcgagcgatc      1980
     tggctaaccg attgggagtc tcaaggcaac ccacaaaagt tccgctacga ggcatcaacg      2040
     acatcaagag catggttcag gagacggttg tagtgaattt ccgatccaga atcaccaact      2100
     atcgtgcaag cgtggaattt ttgataacgc caaccgtaac cagcagtatt ccgtcagcag      2160
     gaactgatgc ttcgacttgg aggttcccat ctggtgtttg tcttgctgat ccagacttcc      2220
     acaaaccgaa caaaatcgac ctgctgctgg gtatagagtt gttcttcgag ttactgcaac      2280
     gaggacatat caagatcgac gaggactatc ccgagttacg agaaacccaa ctaggatggg      2340
     tggttaccgg agttttgaaa aacagatccg tcatcgagga aatccaaaat tctttcacca      2400
     cttatgtaca ccattccagc cgaccacgta gacgccgtga gcagtttgaa gaaaacacga      2460
     atatcgatcc ggaaccgatt cactacaaca tgtacatgag acatgatgac cgaccagtag      2520
     ccgtgctaac aacatcgcag accgtcatgc gccaagacga caagaagagc atctcatcca      2580
     tcgtttccga tccaccaagt cccatagaga atcatcgaat atatccgacg agttcagcac      2640
     aacgaatagg tattgacgtt ccttcatccg attcagttgt tcaccaaaga gaaataccgt      2700
     ccagcatgcc tttgaactat cgtgtcaacc ggggggagta tgttccgtat ggaacgagtg      2760
     tcccaaatca ctgccgcagt agcatgaaaa acaacgacac acattctatc gtcactgaag      2820
     cacacgatga actcaccctc tcaatgacgt aggcagtgtg ggtcgaatca ggggctgcaa      2880
     ttgggtgagt tcatcgtgtg cttcagtgac gatagaatgt gagtgtgagt gccaacag        2938
//
ID   BEL-10_AA-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   supercont1.13;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_AA_;
KW   BEL-10_AA-I; BEL-10_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-371
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.13; Positions 1060498 1060868.
XX
SQ   Sequence 371 BP; 95 A; 87 C; 97 G; 92 T; 0 other;
     tgagtgtccc acaatcagcg tcatcgttat cgtggcactc attgcatggt tcatccggga        60
     gctcatcgta cagtggcagt gacggtagca gcacacgaat cgcgacgctt ccacgcgctt       120
     ctagaagctt ccgcgtgttt ctagattgcg agcgcggtgc tatatatacg cgagccgtat       180
     gcgtagcaga ctcagtatta ttttaaccgc cgcgtgatta tgatcgacag tgaaagtgaa       240
     gtgtaatagt aaagtagtga agtagtgaag tgaataaagt gcagtgttta gtaaaccagt       300
     ggtatcgaat tctttcatcc gaaatacagt ccaccccgac ccgaccggag ttggccacgg       360
     ttaacgcgcc a                                                            371
//
ID   BEL-10_AnFu-I repbase;    DNA;    INV; 5785 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5785
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 760-760 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..5767
FT                 /product="BEL-10_AnFu-I_1p"
FT                 /note="PHD-finger, DUF1759, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and DUF5641."
FT                 /translation="METSTMENQQPCTICNAVTTDKMVACDACNDWFHLGC
FT                 VNEDETVFNREWLCRVCKPNPNEESIAASPAVGSQPATMKEISRLFEEIKA
FT                 CMEKCNAPQSSSSIDETCDACNQSSRGVMVKCDECARKIHLTCIENDETTH
FT                 GRGWKCSKCASQPVPIQSSTIVTIMERLSAMERKMETNRSRVEPRAAYGFP
FT                 HPCSTVYDHTHFTSEGELTRSQASARKVVSGKLPIFSGDPDEWDMFFASFE
FT                 ESTRLCGYSDGENMQRLREALKGHALKAVKRRLYYGDNLPEVLETLKTMYG
FT                 RPELVIGTLLDKIRHAPLPKMEKLETLVEYGLEVEEICATVRKSGVENTYD
FT                 GPLLEELVARLPAVLRLNWGMHCETLPSITLAQFAQWMTKVRNGALRVSPR
FT                 STLREEKRVLKHVNVHSQNPTTTQPRQKVVVTSPAQAESSQGGSRKCACDE
FT                 ECNRLTECDAFLRMSAENRWKYVTEHHVCKCCLRRHQSQCRLQQSCGKVGC
FT                 SKKHHTLLHSYHNEERSSKYETNNSHSADTHREVLLRYVPVTLRAPGQEVN
FT                 VIALLDEGSSVSLMEHALAKKLGISGKPKPLCLSWTGGQHRDEPESIEVSI
FT                 NISGIREQDRQFEVPAIRTVRSLGLPTQSLDMDQFGGKYQHLSQLPIPSFE
FT                 TAAPRILLGMDNYHLTRPLKTVEGYIDEPVATKTRLGWVVSGRCDGQRHIP
FT                 RRPEVISSHRARLCDCRDIEVRIDNALKGSFSLEEPRGVFHEVIRSKEDER
FT                 ALELLRKKTKLTEGRYTTGLLWHYDDTALPKNRSLALKRMECLERKMNRDK
FT                 KLRDVMNTKMKEYVAKGYIRLLTPAEKLSNHPRAWYLPIFPVFNPNKPNKV
FT                 RIVWDAAATFRGHSLNSALSTGPDLLAPLSSVLQRFRERRIAIAADISEMY
FT                 HQVCINDEDLQSQRFLWKWSNEQAEPDEYIMLRMTFGASCSPSCAQYVKNV
FT                 NANRFREQYPEAAKCITNDHYVDDMLASVEDVEEAIKLAQDVTFIHSQGGF
FT                 PLHNWMSNSTQVLQAVDSSTQHQKDLTLEPSSTPNKVLGMWWDSQSDTFCF
FT                 KTPASVHTFLDSKTVPTKRQLLSLLMSIYDPLGLIAGFLFFLKIILQEVWR
FT                 AGIDWDQTIPPAQYEKWRSWSKCLPELEGISIPRCYRRQIELDNNNLQLHI
FT                 FVDAGIDGFAAVAYFRYEQKGNIEVALVGGKTRVAPLKYVSVPRLELQAAV
FT                 LGTRLAHAVKKAHRQEVRSTWFWTDSKDVICWLRSDHRRYSTFVAHRVGEI
FT                 LEETDVNEWHWISTHFNVADEATKWSKLNTHITASQWFAGPAFLSSSEDSW
FT                 NTESVPVSTTEEERKIVNTHVASCVIIDFERFSRWKRLLRSVGYVGRFLHN
FT                 SRRPLARQTGPLTARELQLAERIIIKEVQRNTYPEEYRLLTDQTTITASKK
FT                 LPRNSPLVKRSPYMDPDGLLRVRGRIDACSQVGHDTKRPIILPKAGKVTDL
FT                 IVDDYHRRYRHQNHQTVINEVRQKYDVPALRMACHRVRTNCQFCRVRKAAV
FT                 CEPMMGDLPVSRLSPFSRPFSYTGIDYFGPFIVVDGRKTQKRWGVLFTCLT
FT                 VRAIHIETVPSLSTSSCILAIRNFIARRGTPVEILSDRGTNFVGASRELRE
FT                 ALKEVNVNEMIETMGLPDTKWSFNPPAAPHFGGAWERLVRTVKQTLRNIEF
FT                 TRQPTDAILNSWLIEVEHIVNARPLTDVPVDSEEDAPITPNHFLLGSSAGV
FT                 KPFVTLDDSPDTIRNNWKTSQIYANMFWRKWVAAYLPTLTRRTRWYQPREP
FT                 LKEGDVVLIIDENLPRGCWPKGRIIRAIQSKDGAVRRVHVRLATGKTCERP
FT                 AVKVAAIDIDQRGSVSTS"
XX
SQ   Sequence 5785 BP; 1663 A; 1399 C; 1476 G; 1247 T; 0 other;
     ttttaaaaaa tttaacacaa tttacccagt tcggtagcct tcttgtgtcc ttacgagtgg        60
     aagctatttg ccacacatac gatagaagta cggacaattt cattcttgag gaaagtcgga       120
     agaaattaca atcgcgtttt ctgtgcgtag tgtgcgttgc tggttaccgc gattcgagtg       180
     attataagat tcctgaggaa attcggaaca tttactaatc gcggaacgct cgtgaaaacg       240
     gacaaaaatg gagacttcaa cgatggagaa ccaacagcct tgcacgatct gtaatgctgt       300
     tacgaccgat aaaatggtcg cgtgcgacgc ttgcaacgac tggttccacc tcgggtgcgt       360
     aaacgaggat gaaaccgtgt ttaatcgcga gtggctgtgc agggtttgta aaccaaaccc       420
     aaacgaggaa agtatagcag cgtccccggc ggttggaagc cagccagcca cgatgaagga       480
     gatcagccgg ctgttcgaag agatcaaggc gtgcatggaa aagtgtaacg ccccgcagag       540
     cagcagttcg atcgacgaaa cgtgcgacgc gtgcaaccaa tccagcaggg gtgtgatggt       600
     gaaatgtgat gagtgtgcac ggaagatcca tctaacgtgc atcgaaaacg acgaaaccac       660
     gcatggaaga ggatggaagt gctccaagtg cgcgtctcaa ccggtgccca ttcagtctag       720
     tacgatcgtc actataatgg agagactgtc ggccatggaa cgaaagatgg agacgaaccg       780
     cagtagagtt gaaccacggg cggcgtatgg atttccgcac ccttgttcta ccgtgtacga       840
     ccacactcac ttcaccagcg aaggagagct gacgcggagc caggcttccg caagaaaggt       900
     agtaagtggt aagctgccta tattttcagg tgatcccgat gaatgggata tgtttttcgc       960
     atcatttgag gaatcaaccc ggctttgcgg ctatagtgat ggggaaaata tgcaacgctt      1020
     gcgagaagcg ttgaaaggcc acgcgttgaa ggccgtgaag cgccgtctct actacggaga      1080
     caacctgcct gaggttctcg agacgctgaa aacaatgtac ggtcgaccag agctcgttat      1140
     cggcacgctt ctcgataaaa tccgccatgc accgttacct aaaatggaga agctagaaac      1200
     tctagttgaa tatgggctcg aagtagagga aatctgtgca acagtcagga aaagtggcgt      1260
     ggaaaacacg tatgatggtc ctctgctcga ggaattagta gctcgcctcc cagcggtact      1320
     tcgtctgaac tggggtatgc actgcgaaac ccttccgagc atcactctgg cacagtttgc      1380
     gcaatggatg acgaaggtga gaaacggagc gttaagagta agtcctagat ccactttgcg      1440
     cgaggaaaag cgggtcctga aacacgtcaa cgttcactcg caaaatccaa caacgactca      1500
     gcctcgacag aaggttgtgg tgacgagtcc agctcaagct gaatcgagcc aaggtggttc      1560
     gagaaaatgt gcgtgcgatg aagagtgcaa ccgtctgact gaatgtgatg cattcctgcg      1620
     catgagtgca gagaatcgct ggaagtacgt cacagagcat cacgtgtgta agtgctgcct      1680
     acgacgacat caaagccagt gccgactaca gcaatcctgc ggaaaggtag gatgctcgaa      1740
     aaaacaccac acacttctcc acagctacca caacgaagaa cggagttcca agtacgagac      1800
     gaataattct cattctgcag acacgcatcg tgaggtgtta ctccgatacg ttcctgttac      1860
     gctacgagcc cctggccaag aagtgaacgt gatcgcgctg ttagatgaag gatcgtcggt      1920
     gagcctgatg gaacacgccc tagccaagaa gctcggcata agcggtaagc cgaaacctct      1980
     ttgccttagc tggaccggag gccagcaccg cgacgagccg gagtcgattg aggtcagcat      2040
     caacatttcg ggcattcgag aacaagatcg tcagtttgag gtcccagcaa ttcgcactgt      2100
     ccgtagttta gggttgccta ctcagagcct tgatatggac cagtttgggg gaaaatatca      2160
     gcatctgtcc cagttgccaa taccatcgtt cgaaactgct gcaccacgga ttttattagg      2220
     tatggataac taccatctaa cccgtcctct taaaaccgta gaaggctaca tcgatgaacc      2280
     tgtcgccacg aaaacgcgcc tcgggtgggt ggtatccgga cgatgcgacg gacagagaca      2340
     cattccaagg agacccgaag tcatatcatc gcaccgagcg cggctttgtg attgccgtga      2400
     tatcgaggta agaatcgata atgctttaaa gggcagcttt tctttagaag aacctcgggg      2460
     tgtattccac gaggtcatcc ggtccaaaga agatgaacga gccttggaac tgctaaggaa      2520
     gaaaacaaag ctaacggagg gtagatacac tacggggcta ttatggcact atgacgacac      2580
     agctcttcca aaaaaccgat ccctagcatt gaaaagaatg gaatgcctcg agcggaagat      2640
     gaatagggac aaaaaactca gagacgtcat gaatacaaag atgaaggaat atgtagcaaa      2700
     gggctacatc cgcctgctaa cccctgcaga gaagctttcg aaccatccac gggcatggta      2760
     tctacccata ttccctgtgt tcaatccgaa caagccaaat aaagttcgta tcgtgtggga      2820
     cgcggctgcc acgtttcggg gacattcgtt aaactcagca ctctccacgg ggccagacct      2880
     tctcgctcct ctgtctagtg tcctgcaacg ttttcgggaa cgaagaatag cgatcgcagc      2940
     ggatatctct gagatgtatc accaggtctg tatcaacgac gaagaccttc aaagccaacg      3000
     ctttctttgg aaatggagta acgagcaagc cgaaccggat gagtacatta tgctgcgaat      3060
     gacattcgga gcatcctgct cgccaagctg tgctcaatat gtgaagaacg tcaacgcgaa      3120
     tcgattcaga gaacaatacc ccgaagcagc gaaatgcata acaaatgacc actacgtcga      3180
     tgatatgttg gccagtgtgg aagatgtgga agaggccatc aaattggcgc aagacgttac      3240
     cttcattcac tcgcaaggag gattccctct ccataattgg atgtccaact cgacgcaagt      3300
     actccaagct gtcgacagca gtacgcaaca ccaaaaagac ctcactttag agcccagttc      3360
     aacaccaaat aaggttctag gcatgtggtg ggactcgcaa agtgatacct tttgcttcaa      3420
     aaccccggca tcggtacata ccttcctaga tagtaagaca gtgcccacca agcgtcaact      3480
     actaagcttg cttatgtcga tatacgaccc gttaggacta attgcgggtt tcttgttttt      3540
     cctcaaaata atcttgcaag aagtttggag agcaggaata gattgggacc aaacgattcc      3600
     accggctcag tatgaaaagt ggagaagttg gtctaaatgt ttaccggaac tcgaaggcat      3660
     ttcaatccca cgatgctatc ggcgacaaat cgaactcgac aataataatc tacagcttca      3720
     tatttttgta gatgcaggga ttgatggatt cgccgcagtc gcctacttcc gttacgaaca      3780
     aaagggaaac atcgaggtcg ccctcgtcgg tggaaaaaca agagtggcgc ctcttaagta      3840
     cgtgtcagtc ccgagattag agcttcaagc cgccgtattg ggcactcgct tagcacatgc      3900
     cgtaaagaaa gcccatcgtc aggaggttag aagtacgtgg ttctggaccg actcaaaaga      3960
     tgtaatctgc tggctgcgat ccgaccatag aagatacagt accttcgtgg cacatcgagt      4020
     aggagaaatc ttagaagaga ccgacgtgaa tgagtggcac tggatatcaa ctcatttcaa      4080
     cgtagccgac gaagctacta agtggtccaa gctcaacaca cacataacgg caagccagtg      4140
     gtttgctgga ccagcgttct tatcttcctc agaagacagc tggaataccg agtcagttcc      4200
     ggtatcaact actgaagagg aacgaaaaat tgtcaacact cacgttgcca gctgtgtaat      4260
     aatcgatttc gaacgtttct cccgatggaa gcgtttgtta agatcggttg gttatgtagg      4320
     ccgttttctc cataacagtc gacgaccgtt ggcccggcaa actggaccat taacagctcg      4380
     agaactgcaa ctagccgaac gaatcataat caaagaagtg cagcgcaaca cgtaccctga      4440
     ggaatatcgc ttgctcacag accagaccac catcaccgct tcaaagaaac tgcctcgcaa      4500
     cagccctctg gtgaaacgca gtccgtatat ggacccggat ggattgttac gagtcagggg      4560
     aagaatcgac gcatgcagtc aagtaggtca cgataccaaa cgacccatca tcctaccgaa      4620
     ggctggaaaa gtcaccgatc ttatcgtgga cgattatcac cgacggtaca ggcatcaaaa      4680
     tcaccagaca gtcatcaatg aggtacgaca aaaatatgac gttcctgctt taagaatggc      4740
     ctgtcatagg gtgagaacca attgccaatt ttgtagagtg aggaaagccg ccgtatgcga      4800
     acccatgatg ggagatctac cagtctctcg attatccccc ttctcacgcc cgtttagcta      4860
     caccggaatc gactattttg ggccattcat cgtagtagat ggacgcaaga cacaaaagcg      4920
     gtggggagta ttgtttacct gcctcacggt gcgcgcgata cacatcgaaa cagttccctc      4980
     attgtcgacc agttcgtgca tcctagcgat acgaaacttc atcgctcgtc gcggaacgcc      5040
     agtcgaaatc ttgtcagata gagggactaa ttttgtcggt gcaagtcgtg aacttcgaga      5100
     ggccctaaaa gaggtaaacg tgaatgagat gatcgaaacg atgggcttac cggacacaaa      5160
     atggagcttc aatccgccag cggcaccgca tttcgggggg gcatgggagc gactagttcg      5220
     gacggtaaaa caaactctac gcaatatcga gtttacgagg caaccgacgg acgctatatt      5280
     gaacagctgg ctgatcgaag tcgagcacat cgtgaacgct cgtccgttga cggatgtgcc      5340
     agttgatagt gaggaagatg ccccaataac acctaatcac tttcttttag ggtcgtcggc      5400
     tggagtaaaa cccttcgtta cacttgacga ctcaccagat acgatacgca acaattggaa      5460
     aacgtcgcaa atctacgcca acatgttttg gcgaaaatgg gtagcagcct accttcctac      5520
     ccttacccga aggacgaggt ggtaccagcc acgtgaacca ctgaaagaag gagacgtagt      5580
     cctgatcatc gacgaaaatc tgccacgagg ttgttggccc aaaggtcgga taatccgcgc      5640
     gatacaatcc aaagacggag cagttcggcg agtacatgtg cgtttggcaa ccggaaaaac      5700
     atgcgaacga ccggctgtta aagtagcagc tatcgacatc gaccaacgag gaagtgtttc      5760
     aacaagctga aacactgggg gccag                                            5785
//
ID   BEL-10_AnFu-LTR repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-346
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 759-759 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 346 BP; 103 A; 69 C; 88 G; 86 T; 0 other;
     tgttgacaaa agcaacgtcg atgacgattg acaggaggat gacagccgtg cgcgtgaaac        60
     gagcccgagt taccaaaccc gagtgcgcct gccggtatgc actcaggaag atgagtgcta       120
     tgtcgatgac cgacgggcga aggcgatgac cgaggcgatg agcgggcgcg aacgacaaat       180
     cgtcttttgt agcgaaaaaa catccgacag aggaagacgt taaatttttt aatttttttt       240
     ttttctgctt ctgctttaaa acaatttgta aaagtaataa aaggaacaat attaaaaagc       300
     gcgaactcct attcggatta tttgttgccc tgttgcgttt gcaaca                      346
//
ID   BEL-10_CQ-I repbase;    DNA;    INV; 4394 BP.
XX
AC   AAWU01000654;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_CQ_;
KW   BEL-10_CQ-LTR; BEL-10_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4394
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 173-173 (2011).
XX
DR   GenBank; AAWU01000654; Positions   77405   73012.
XX
CC   'ATACT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..2155
FT                 /product="BEL-10_CQ-I_1p"
FT                 /translation="MESITAKRNSLFAKVKRELETAERVKTQNPSLSEVRE
FT                 RLVRLEAQGNSFFDVQDQFEDGTSATTLENLVSVFDYRKEFEDRYYAAKAI
FT                 YAALDEGSGASDRSFAEPANNLKTAVAALLETQRALLSNQAAHAAQLNQIQ
FT                 QGNQPPVGQPAQAQPDPFINVRLPPINIPKYAGVRKEWLSFKDLFVSTIHS
FT                 KESLRPSQKLQYLKSLLEGDAASQISSFGISDDNYPLAWDKLLRKYDQKKY
FT                 TVFALVKEFLDQPVVSDATAGNLQKLVTTSDEVVRQLDVLGEQYQSRDPWL
FT                 IQLLLEKIDEETQALWAQKLVTLENPSLTDFLKFLEDRCDAIETCSSFTRK
FT                 CTLSGAGAKKEIRKQPAKPAEKKVQSYVATPQPCPKCSKEHLLFLCEAFKA
FT                 SSVADRRELVQKSRLCFNCLRTSHTAKTCSSKHTCKTDGCNQRHHTLLCQH
FT                 GGRQAATAGLPGQQIAAMPVQQPAMEAQPTVPSFKAEVTSDPAVKITVLPT
FT                 ALVKLRGKNGVFHTARAMIDSCSGASLISEACMTRLGISRSNARFPVTGVA
FT                 GTQAGITRGMALLEIAPRFSDEVVMKTQAYVLEVLAPPTPCQSFKPKQLEL
FT                 LRGLQLADPEYYKAGPVDVILGAELFLPILQAGQVTDEDGLPVAQKSSLGW
FT                 LVAGKFGGETVLQTNLVSFTVQLDVNIDQTLRKFLGNRRSACGQGTHCRRE
FT                 ARC"
FT   CDS           2064..4394
FT                 /product="BEL-10_CQ-I_2p"
FT                 /translation="MSTSTRRCASFWETEEVPAVKVLTADEKRAVDIFNTT
FT                 TRRNDEGRFVVRLPFDDSKPALGDSLGAALRRLHAMERKFLSNPPFKQAYR
FT                 DFMSEYQQLGHMELIPQSEVDKHPSECFYLPHHAVQKEDSSTTKLRVVFDG
FT                 SCRTSSGVSLNDRLLIGPNNNEDLYDVYCRFRTYPVVFVSDIEKMYRQVRV
FT                 DKQDTDFQRIVWRDDPDQPVQHYRLTTVTYGTSSAAYLATESLRQAARDNA
FT                 EKHPVAADRILKGFYVDDLMSGADTVEEAQELAGQITTILGEAGFVLRKWS
FT                 SNAPELLENIADSRQGPVPVEFTNVTASVKALGIHWSPTSDWFEFKVNLDI
FT                 NSPNTKRQLLSDASRLFDPFGWLAPVIVKIKIIFQLLWLYDLLWDDPLPPL
FT                 PEADWNTIKQTLHLLERIRVPRRIPAFNGKLQLLGFSDASESAYSAVVYGR
FT                 SADRNGKIHIVLICAKTKVAPIQQICVPKLELNGSWLLAALMKRVSLALCH
FT                 LELQHFAFTDSAIVLEWLSAHPRKWKTFVANRTSAILDFLPRSMWHHVSSK
FT                 DNPADCASRGISPLELLNHPLWWDSPYWAHSEQSFLEHCAAPAPKAPPLEE
FT                 RQIRTFCLEIGSPRSNFTLERYLLDRFSSLRRCTRTLATIRRFLFNLARPK
FT                 VERLTGPLTPAELKVAGLQLVRLAQHEAFAKEIACLRKSTEVSNKSKLRPL
FT                 FPFIDLDETLRVGGRLQNADIPYDMRHPPILPQQHTWITMASCGPSRCAEE
FT                 QRSTRDRSKSWFYYRLVEATASRWGG"
XX
SQ   Sequence 4394 BP; 1028 A; 1342 C; 1220 G; 804 T; 0 other;
     tttatggtcc ttcgcgaacc gaatagtaga accgtgcgat ttcccgatgg aatcgatcac        60
     cgcgaaacgg aattctctct ttgcgaaagt gaaacgcgaa ctcgaaaccg cggaacgagt       120
     gaagacgcaa aacccctcac tctctgaggt ccgggagcgt ctggtgcgcc tcgaggcgca       180
     ggggaacagt ttcttcgacg tccaagacca gttcgaggac ggaacctcag cgaccacctt       240
     ggaaaaccta gtctcggtct tcgactaccg gaaggagttt gaagatcggt actatgcagc       300
     gaaggcgatc tacgctgccc tcgacgaagg ttccggcgcc agcgatcgat cgttcgctga       360
     gccggcgaac aacctgaaaa ctgcggtagc ggcgctgttg gaaacgcaac gagcgctcct       420
     gtccaaccaa gcggcccacg cagcccagct gaaccagatt cagcagggaa accaacctcc       480
     agtaggacaa ccagctcaag cgcaaccgga tcccttcatc aacgtccggc ttcctccaat       540
     caacatcccg aagtacgcgg gagtccggaa agaatggctt tcgttcaagg acctgttcgt       600
     cagcaccatc cacagcaagg agtcgctgcg gccgtcacag aagctgcagt acttgaagtc       660
     gctgctggag ggagacgcag catcccaaat cagctcattc ggcatctcgg atgacaacta       720
     cccgctggcg tgggacaagc tgctgaggaa gtacgatcag aagaagtaca ccgtgttcgc       780
     gcttgtgaag gagttcctgg accaacctgt cgtgtcagac gcaaccgctg gcaacctcca       840
     gaagctggtc acgacctcgg acgaggtagt tcggcagctc gacgtcttgg gcgagcagta       900
     ccagtcacgg gacccctggc tgatccagct cctcctggag aagattgacg aggagacgca       960
     ggcgctctgg gcgcaaaaac tcgtcacctt ggagaacccg agcctcacgg acttcctgaa      1020
     gttccttgag gaccggtgcg acgccatcga aacctgctca tcattcacac gaaagtgcac      1080
     cttgagtgga gcgggggcga agaaggagat acgaaagcag ccggccaagc cagctgagaa      1140
     gaaggtgcag agctacgtcg caacaccgca gccctgccca aagtgttcca aagagcactt      1200
     gctgttcctg tgcgaagcgt tcaaggcgtc cagcgtcgcc gaccgtcggg agttggtgca      1260
     gaagtccaga ctttgcttca actgcctgag gacgtcgcac acggcaaaaa cctgttcttc      1320
     gaagcacacc tgcaagactg atggatgcaa ccagcgtcat catacgctcc tctgtcaaca      1380
     cggcggcaga caggcagcta ccgcagggct tccgggacaa cagatagcag cgatgccggt      1440
     ccagcaaccg gccatggaag ctcaacccac ggttccgagt ttcaaggcgg aggtcaccag      1500
     tgatccagct gtcaagatca ccgttcttcc cactgcgctc gtcaagctgc gcggtaagaa      1560
     tggtgtcttc cacactgcta gggcgatgat agactcgtgc tctggcgcgt cgctgataag      1620
     cgaggcctgc atgacgcgac tcgggatcag ccggagcaac gcgcggtttc ctgtaaccgg      1680
     agttgccggg acacaagcag gaatcacccg gggaatggcg ctgctggaga ttgcaccccg      1740
     tttcagcgac gaagtggtga tgaagacgca ggcgtacgtg ctcgaagtgt tggctccccc      1800
     cacaccgtgt caaagcttca agcccaagca attggaacta ctccgagggc tccagctagc      1860
     cgatccggag tactacaaag cgggaccggt agacgtcatc ctaggcgccg agctgttcct      1920
     gccgattcta caagcgggcc aggttacaga cgaggacggt ctacccgtgg cccagaagtc      1980
     gtcgctcggc tggctcgtcg ccggcaagtt cggcggtgaa acagtgctgc aaacaaatct      2040
     ggtgtccttc acggtgcagc tggatgtcaa catcgaccag acgctgcgca agtttttggg      2100
     aaaccgaaga agtgcctgcg gtcaaggtac tcactgccga cgagaagcgc gctgttgaca      2160
     tcttcaacac aaccaccagg cgcaacgacg agggccgatt cgtggttcgg ctccccttcg      2220
     acgactccaa gccggcattg ggcgactcgc tcggtgcggc actgagaagg ctgcacgcga      2280
     tggagcggaa gttcctctcg aatccgccgt tcaagcaagc ctaccgtgac ttcatgtccg      2340
     agtaccagca actgggacac atggagctca tcccgcaatc cgaagtcgac aagcacccca      2400
     gcgagtgctt ctatttgcct caccacgcag tccagaagga ggacagttca acaacgaagt      2460
     tgcgtgtcgt cttcgatggc tcgtgcagaa ccagttctgg cgtgtcgttg aacgaccggt      2520
     tgctgattgg tccaaacaac aacgaagacc tgtacgacgt ctactgtcgc ttccgcacct      2580
     accccgtggt cttcgtgagc gacatcgaga agatgtacag gcaagtacgg gtggacaagc      2640
     aggacacgga cttccagcgg atcgtctggc gcgatgatcc cgaccaaccg gtgcaacact      2700
     accgtctgac gacggtgacg tacggcactt caagcgcagc ctacttagcg accgagtctc      2760
     tccgacaagc ggcccgagac aacgctgaga agcaccccgt agcagctgac aggatcctca      2820
     aagggttcta cgtggacgac ctgatgtccg gcgccgacac ggtcgaagaa gctcaagagc      2880
     tagctggcca gatcacaacc atcctgggcg aagctggatt cgtcctccga aagtggtcct      2940
     ccaacgcacc cgagctgctg gagaacatcg cagacagccg gcagggacca gtccctgttg      3000
     agttcacgaa cgtgacagcg tcggtcaaag cacttggaat tcactggtct ccaactagtg      3060
     actggttcga gttcaaggtc aacctggaca tcaacagccc gaacacgaag cgtcaactcc      3120
     tctccgacgc atccaggcta ttcgacccgt tcggatggct cgctccagtg atcgtcaaga      3180
     tcaaaatcat cttccaactg ctgtggctgt acgacttgct gtgggacgac ccgctgccac      3240
     cccttcccga agcagattgg aacaccatca agcaaacgct tcatctgctg gagcggattc      3300
     gcgtgccccg ccgaattcca gccttcaacg gcaagttgca gctgctcgga ttctcggacg      3360
     cctcggagtc ggcgtactct gcggttgtct acggccggtc tgcggaccgc aacgggaaaa      3420
     tccacatcgt gctgatttgc gctaaaacca aggttgcgcc aattcagcag atctgcgtcc      3480
     caaagctcga actcaacggt tcctggctgc tggccgccct gatgaagcga gtctccctcg      3540
     ctttgtgcca cctcgagctg caacactttg ccttcacgga ctcggcaatc gtactggaat      3600
     ggttgtcggc acacccccgc aagtggaaga ctttcgtcgc caatcgaacg tcagcgatcc      3660
     tggacttcct gcccaggagc atgtggcacc atgtgtcatc gaaggacaac ccggccgact      3720
     gtgcgtcgcg agggatctcg ccgctcgagc tgctcaacca tccgctgtgg tgggactccc      3780
     cctactgggc ccacagcgag cagtcgttct tggaacactg cgcagcacca gcaccgaagg      3840
     caccacccct cgaagaacga caaattcgca cattctgtct ggagattggc tccccgcgta      3900
     gcaacttcac actagagcgc taccttctcg atcgattctc ctcgctacgc cgctgcactc      3960
     ggacgctggc gacgatccga cggttcctgt tcaacctggc acgaccgaag gtggagcgct      4020
     taaccggacc gctgacaccg gcggaactca aggtagctgg tctacaactc gtacgactag      4080
     cacaacacga agcatttgcg aaggagattg cctgcctgcg caaatcgacc gaggtatcca      4140
     acaaaagcaa gctgcgcccg ctctttccgt tcatcgacct ggacgaaaca cttcgtgtcg      4200
     gaggaagact gcagaacgcc gacatcccct acgacatgag acacccgccc atcctgccgc      4260
     aacagcacac ctggatcaca atggcatcgt gcggtccgtc acgctgcgca gaggaacaac      4320
     ggagtaccag agaccgatcc aaaagttggt tctactaccg actggttgag gctactgcct      4380
     caaggtgggg agga                                                        4394
//
ID   BEL-10_CQ-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   AAWU01000654;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_CQ_;
KW   BEL-10_CQ-I; BEL-10_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-236
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 174-174 (2011).
XX
DR   GenBank; AAWU01000654; Positions   73011   72776.
XX
SQ   Sequence 236 BP; 72 A; 63 C; 41 G; 60 T; 0 other;
     tgtttgggta gaacccacgc agtgtgtaga cttttgatta aaccccctta accgtgtaca        60
     gtccacttcc caacacaaca tcacacacac actgacacag caaagggccc agtaaatgtc       120
     acttccccaa ataaacttcc gttaggagcg atcattctcg aacgagcaga ataaaaagca       180
     acacgttttg ttagagttcg tcgcgacttt tatttatttc gtttcgaccg caaaca           236
//
ID   BEL-10_DAn-I repbase;    DNA;    INV; 5349 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DAn_;
KW   BEL-10_DAn-LTR; BEL-10_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5349
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4362-4970] - Integrase core
CC   'AAGGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..5348
FT                 /product="BEL-10_DAn-I_1p"
FT                 /translation="MESGAEATASAASSRERMLRRRAEVTCQEMEVLHRKV
FT                 KAAMQTEDSTILTLESMEKRLRDRFTTLQEELEELNYSEIGSDLYWRFSQL
FT                 ATDVHVDIQVEVAKRSMRVAAHSTLLDATNGAGISNAPYRPAPSLPPLPMP
FT                 TFSGGYAEWPDFCALFRTTIDSHPHLTNMEKLRWLISCLRDSALETVRALE
FT                 ITDANYEVALDLLRNRFSNRRLIFQSHINEILQLRTVEPGSVATLRELSDR
FT                 FNGHMRALMSSGTSAEIQGCLLIQIIFQKLDPATKAKWEDSLAGNTDDSLP
FT                 TWESMARFLEQRCRTLETVDLALAPHLSANQAGRRRPFNNRSCMLLNAPPA
FT                 SCALCGNLAHAVPSCPRFLALSVEERYDEVRRLALCFVCLKSDHLARGCSS
FT                 SRCPTCHRRHHALLHPCERLASATSVPASGSNPANVAGVATSQAPPANALI
FT                 AQDRRAEIVFLPTANILVRGRSGAFLPCRALLDSGSQVHLITSRLASQLQL
FT                 HRSKCSVAVTGLGDAEFITDRASVNVCLKSRLSTYSVYIEAIVASHIIERQ
FT                 PGLNLDVSNWKVPANVVLADPDFHRAQRVDLLIGASLFFDLLSVGQIQLGD
FT                 GLPLLQKTRFGWVVSGGGCTPGNPRLAASCKMISADSATSFDDRLDYLLRQ
FT                 FWEVDACTAPIVQATKEELDCEAHFVMHHVRLESGAYSVRLPIKHSVDLLG
FT                 ESYAQALRRFHSLERKLDRHPNLRTQYSSFIKEYLDLGHMSLVPQELRGKC
FT                 QYFLPHHCVLKEESSTTKLRVVFDGSAATASGYSLNDVLMSGPVIQPKLFH
FT                 TLLRFRSHLVALTGDICKMYRCVRVFPDDSLLQCILWRDSIHDDVKVFKLD
FT                 TVTYGTKPASFLSIRSMHQLAKDEGAGFPVGSRVVLQDFYVDDLISGAPTK
FT                 TEALEIIAQTSSLLSKGQFQLRKWCSNIPEVLEGVPESDRESYLKFDDGSP
FT                 FTKTLGLAWDPSADLLLFSFEALQPTAKPTRRSILSSVARFYDPMGLVGPV
FT                 VTRAKILLQKLCRENLSWDESLPQSLLSEWLQFCSSFDQIQRIKFPRLVIP
FT                 CQERLEVHGFCDASLDAYGACVYVLSGSDCRLLCSKSRVAPIKTQTIPKLE
FT                 LCGAELLARLMAEVADLGTYKGDYYCWCDSLVALSWIQDEPARFNVFVSNR
FT                 VSSIQELTKAMKWLYVPTAVNPADLLSRGSLPTELLNSQLWSQGPPFLRGS
FT                 KDDWPIAVVAEKAAIELRARTLLATAPPRDIAALSKFANSFPSLQRVFAYV
FT                 FKFCRRIRHEGISVQDLKGGTHLLLRAVQLAEFKEEISLLKSRRLVPPSNP
FT                 LASLAPFVDNDGLLRVDGRLRNSALDFDGRHPIILPRGHPVTSAIVTHFHE
FT                 KNLHSGPRALVAKIRSQYWPIGGRKTVSRVVNKCVRCFRAKPRLLEHVMAD
FT                 LPTERVAGFQCFDVSGVDFCGPFFYKAETRNKGPIKCYVSVFICFSTKAIH
FT                 LELVKDLSTASFLSALQRFICTRRKPRQIWSDNATNFVGAKNELMELKQRF
FT                 LSQEHQASLHDFCLSESIEWRFIPPRSPHFGGLWEAAVKTAKHHLYRAVGP
FT                 AVLGFEELRTLLCRIASIINSRPLVSISENPADLDVLTPAHFLNGGPPSTF
FT                 IEPDLTALNFNRLDGWQRVSFLQQVFWARWKEEYLTLLQQRSKWRTPGPVI
FT                 AVGDIVLVKDENLPPMKWPLARILELVPGRDGVHRVAVLKTAVGVTKRAVS
FT                 RLCLLPVKDSVEDSAFNGGR"
XX
SQ   Sequence 5349 BP; 1148 A; 1372 C; 1372 G; 1457 T; 0 other;
     ttttggtgac cccgacgtga tatcatccgt tcaattaacg cgatcagcat taaaagtgcc        60
     actgaaacac ctttgtttgt tttgttgtcg cattttaatt taattggcat cttaattgga       120
     ataattcaat ggaatctgga gctgaagcca ctgcatctgc tgcgtcaagc cgtgaaagga       180
     tgctgcggag acgcgcagag gtaacatgcc aggaaatgga ggtactgcat cggaaggtca       240
     aggctgcgat gcaaactgaa gattcaacca ttctgaccct cgagtctatg gagaagcgtc       300
     tgcgcgaccg tttcaccacg ctgcaggagg aattggagga gctaaattac agcgagatcg       360
     ggagcgattt atattggcga ttctctcagc tggctacaga cgtgcacgtt gacatccagg       420
     tggaggtggc caagcgttct atgcgggttg ctgctcactc tacgctgtta gatgctacca       480
     atggtgctgg gatttcaaac gctccatata ggcctgctcc ctcattgccc ccgttgccaa       540
     tgccaacatt tagcggcggc tatgctgagt ggccggattt ctgcgcccta tttaggacaa       600
     caattgacag ccacccgcac ttgaccaaca tggagaagct caggtggctc atttcctgcc       660
     tgcgggactc agccctggag actgtgaggg cgcttgagat taccgacgcg aactatgagg       720
     ttgccctcga ccttttgcgc aaccgtttca gcaaccgtcg cttaatcttc cagtctcaca       780
     tcaacgagat cttgcagtta aggacggttg agccaggatc cgttgctact cttcgagaat       840
     tatccgaccg atttaatgga catatgcggg cccttatgag ttccgggacg tcggctgaaa       900
     ttcaagggtg cctcctcatc cagatcatct ttcaaaagct ggaccctgcc acaaaggcca       960
     aatgggaaga ctcgctggca ggaaacactg atgatagcct gccaacttgg gaatctatgg      1020
     ctcggtttct ggagcaaagg tgccgtaccc tggagacggt ggatttggcc ttagctccgc      1080
     atttgtcagc gaatcaagcg ggccgtcgta ggccatttaa caaccgatcc tgcatgctcc      1140
     tgaatgctcc gcctgcttcg tgtgccctgt gcggcaacct ggcacacgct gtgccttctt      1200
     gcccaaggtt tctcgccttg tcagttgagg aacgatacga tgaggttcga cgtcttgccc      1260
     tctgctttgt gtgcctcaag tctgatcatt tagcccgcgg atgctcatcc tcccgctgcc      1320
     caacttgcca tcgccgacac catgcgctat tgcatccttg cgagcgttta gccagcgcca      1380
     cttccgttcc tgcttctgga tcgaatccgg ccaatgtagc aggggttgcg acctctcagg      1440
     ctcctcctgc taatgctctt attgcacagg atcgcagggc tgaaatagtg ttcttgccca      1500
     ccgccaacat tctcgtccgt ggcagatcag gagcctttct tccttgtcga gcgctacttg      1560
     actccggctc ccaagttcat ctcatcacat cccggctggc cagccaactt cagcttcatc      1620
     ggtccaaatg ctctgtagca gtgactggcc ttggagacgc tgagtttatt acggatcggg      1680
     catcggttaa cgtttgcctg aagtctcgcc tatccacgta ttccgtttac attgaggcaa      1740
     ttgtggcgtc tcacatcata gagcgtcaac ctggcctgaa cttagatgtg tccaattgga      1800
     aggttcccgc caatgtggtg ctagctgacc cggacttcca cagagctcag cgtgtggatc      1860
     tgctgattgg agcaagcctg ttttttgatc tgctctcagt cgggcaaatc cagctaggag      1920
     acggtctgcc tctgttacag aagacacgtt ttggatgggt agtttctgga ggaggttgca      1980
     ccccgggaaa ccctcgcttg gccgcatcat gtaagatgat ttctgctgac tcagcaacct      2040
     cgtttgacga tcgcctcgat tatcttctcc gccaattctg ggaagtggat gcctgcactg      2100
     cgcctatcgt tcaggccact aaggaggagc tcgattgcga ggcccacttc gtcatgcacc      2160
     acgtccgcct tgaatcaggt gcctattccg ttcgcctgcc aatcaagcac agtgtggatc      2220
     tgttagggga atcctacgca caggctttgc ggcggttcca ttcacttgag cgcaagctgg      2280
     atcgtcatcc gaatttaagg acccaatatt cgtctttcat caaggaatac ttggatctgg      2340
     gtcacatgtc tctggtgccg caggaattgc gaggtaagtg ccagtatttc cttccccacc      2400
     actgcgtcct gaaggaagaa agttccacca ctaagctgag agttgtgttc gatggttcgg      2460
     ctgctacggc ttccggctat tccctcaatg atgtcctgat gtccggcccc gtgattcagc      2520
     ctaagctttt tcatacattg cttcggtttc ggtcccacct tgtagctttg actggggaca      2580
     tttgcaagat gtaccgctgc gtaagggtct ttccggatga tagtttgctg cagtgcatcc      2640
     tctggagaga ttctatccac gatgacgtga aggtttttaa gctcgacacc gtgacgtatg      2700
     gcacaaagcc agcgtctttt ttatctattc gctcaatgca ccagctggct aaggatgaag      2760
     gtgccggttt tcccgttggc tctcgtgttg tcctccagga tttttatgtg gacgacctta      2820
     tatctggtgc cccaacgaag actgaagcgc ttgagataat agctcagaca tcgagcctgt      2880
     tgagcaaggg tcagtttcaa ttaaggaaat ggtgctccaa catcccagag gttttggaag      2940
     gcgtgcccga aagtgataga gagtcttact tgaaatttga cgatggcagt ccgttcacaa      3000
     agactcttgg attagcatgg gatccttcag ctgacctgct gcttttttcc tttgaagctc      3060
     ttcagcccac cgccaaaccc accaggagat ctatactatc ttccgtcgct cggttttatg      3120
     acccaatggg cttggtaggt cctgtagtca ccagggcaaa gatcctgttg cagaagctgt      3180
     gccgagaaaa tttgtcatgg gatgaaagcc ttcctcaatc ccttctctcc gagtggttac      3240
     agttctgttc cagttttgac caaattcagc gaattaagtt tcctcggtta gtcattccct      3300
     gtcaagaaag gctggaggtc cacggatttt gcgacgctag tttagatgcg tatggagcgt      3360
     gcgtgtatgt attgtcaggt tctgattgtc ggctgttatg ctcaaagagt cgagtggcac      3420
     ccattaaaac tcagacaata ccgaagctag agttatgtgg agctgagttg ctagcaagac      3480
     taatggctga agttgctgat cttgggacat ataaaggaga ttattattgt tggtgtgact      3540
     ccttggttgc cctatcctgg attcaagatg aacctgctcg atttaacgtg tttgtttcta      3600
     atcgcgtttc ttccattcag gagctcacca aggcaatgaa atggctttat gttcctactg      3660
     ccgtcaaccc agccgatcta ctgtccagag gttctcttcc cactgagcta ttaaactccc      3720
     agctttggtc ccaaggccct ccatttcttc gtggttccaa ggatgattgg cccattgctg      3780
     ttgtggccga aaaggcagcc atcgaacttc gcgccaggac tttattggct acggctccac      3840
     ccagggatat cgccgcattg tcaaagtttg ccaactcgtt tccctcccta cagagagtgt      3900
     tcgcctacgt cttcaagttt tgccgccgca tccgtcacga aggaatttct gttcaggatc      3960
     tcaaaggagg aacccatcta ctgttgcgcg ccgtccagct tgccgagttt aaggaagaga      4020
     taagcttact aaagtcacgc agattggttc cgccctcaaa ccctctggcc tcgcttgctc      4080
     cctttgtgga taatgatggt ttgcttcgtg ttgacgggcg attgcggaac tctgcgttgg      4140
     attttgacgg acgtcatccg atcatccttc ccagaggcca tcccgtcact tcggccatag      4200
     tgactcactt tcacgagaag aacctgcatt ctggtcctcg ggcactagtg gcgaaaatcc      4260
     gttctcaata ctggcccatt ggggggagga agaccgtttc aagggttgtg aacaaatgcg      4320
     tacgttgttt tcgcgcaaag cctcgtctac tggagcatgt tatggccgat cttccgaccg      4380
     agagagttgc aggattccaa tgttttgatg tcagtggtgt ggatttttgc ggaccgtttt      4440
     tctacaaggc agagactcgg aataagggcc ctattaaatg ttatgtaagc gtattcatct      4500
     gcttcagtac gaaggcaatc catttggagt tagttaagga cctttccacc gcttcgtttc      4560
     tgagcgccct ccaacggttt atttgtacgc gacgtaaacc cagacagata tggtcggata      4620
     atgccaccaa ctttgtgggt gccaagaatg agcttatgga gttgaagcaa agattcctca      4680
     gccaggagca ccaggcttct ctgcacgatt tttgcctgtc tgagtctatc gagtggcgat      4740
     ttattcctcc acgctctcct cattttggtg gactatggga agcagcagtg aaaacggcta      4800
     agcaccatct ttatcgtgca gttggtcccg cagttcttgg ctttgaagaa ttaaggactt      4860
     tgttgtgccg catcgcctca attattaatt ctcggcccct tgtgtcgatt tcagagaatc      4920
     ctgcggatct agatgtcctg acgccggctc attttttaaa tggcggaccg ccttcaacat      4980
     tcatcgagcc ggaccttact gcgctaaact ttaatcggct ggatgggtgg cagagagtct      5040
     ccttcctgca gcaggttttc tgggctcgtt ggaaggagga gtaccttacg ctgttgcagc      5100
     agcgttccaa atggcgcacc cctggccctg taattgctgt tggagacata gtcctggtga      5160
     aggatgaaaa tctaccccca atgaagtggc ctctggccag gatactggag ctggttcctg      5220
     ggcgtgacgg agtgcaccgt gtggccgttc tcaaaacagc ggtgggagtg actaagcgtg      5280
     cggtgtcacg gctgtgtctg ctgcctgtca aggattcggt tgaagattca gccttcaacg      5340
     gggggagga                                                              5349
//
ID   BEL-10_DAn-LTR repbase;    DNA;    INV; 384 BP.
XX
AC   AAPP01019745;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DAn_;
KW   BEL-10_DAn-LTR; BEL-10_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-384
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019745; Positions   20270   20653.
XX
SQ   Sequence 384 BP; 98 A; 67 C; 95 G; 124 T; 0 other;
     tgttgagcca agcagacaag ggcgaagctg ctaaataagt cacatatgtt ataaatctga        60
     gtagcagcgg cgggttatcg gcagttctgg tttttgttta catctccccg ttcgcatgcg       120
     ctttgctggt atttgtagcg catgcgcttt ggggagcttt tttggagagc tgctgcacac       180
     cagcaaatcg tgcatttgtg tgcgttcgta ttgctaagtt cgtattgcta agcttgggta       240
     cttgtattat tgtattgatt ggaacagctg caagttgggt tagagttgaa ccctcgagaa       300
     ataaaaatat tgaaattgcc ttgaaaattg aactgtggaa tttaattcgt ttggccgcta       360
     ttaaaaacca ttaatagctc aaca                                              384
//
ID   BEL-10_DAzt-I repbase;    DNA;    INV; 7887 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7887
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 804-804 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           758..7804
FT                 /product="BEL-10_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and Baculovirus F
FT                 protein."
FT                 /translation="MLSEYTIKLLEAQVAVANEIKSIEAGILTSDVICRLR
FT                 ELKIVVTANNSKLMGCGVVDHDYFNKKQYQQILKNIDDIERSYVEVKSAET
FT                 INVQVETGTLKRDLEPKVDQSLEEVVEDFGRLEDYLKSHLEQAQKELDQAG
FT                 WCECQIRKDRMEYLRKKLRKNVTEYYKNYESNFKFDDEVADLEFEFQCLLR
FT                 AINTRMQDITNEKSSVSKEAGIKKENEDFPVLPKAEVPTFSGLDKEWDGFS
FT                 QLFSEIIHNRDGLSTSLKFTYLKMAIKGEARSMVAHLLTGPVENYNAAWEL
FT                 LTKRYENKRKIFSDQLNRLLDLPILDNDSAKQIKMFSDSINEAIHLIKLKS
FT                 QLTEEVDVIFAHIILKKFNKDALQLYESHIKKTKEIQRLPDVMEFLEQRYT
FT                 SLYSSQEEEKKPLKKGVPYNSSIKESCPLCKMAGHTIMQCYRFKRMSPIER
FT                 GQTIQKHRLCNRCCRHEMYKKCSSEMFCGICKKPHHTMLHIPYEKRENVNT
FT                 CLTKKQAFLATAIIKVRAVNGGYENLRALIDCGSQCTIISEEAAQALKLAR
FT                 KRVNTEVSGVSSTDSCTSKYKVNLSVQTRDVGKKPLNIEAIILPKLMKALP
FT                 IKSFNIDKTKWQNYVLADPNFNKPSRVDIVIGVDLYAHVVKDGVVKIDGLL
FT                 GQNTEFGWIISGCTKSKGDNLIVATTIEVGDLERFWEVESDSSDEEEDVCE
FT                 KHFLATTKREETGRYVVKIPFKKDKDLGDSKAQAMARFYNLEKKLSKNEKL
FT                 KENYIKFMHEYINLGHMVESKKEGKYYLPHQGVIRDSSLTTKLRVVFDASA
FT                 KTTNNKSLNDVMWVGPRVQKDIFDIIVKWRKWPYVVSADIEKMYRQIKVDE
FT                 EDQHYLHIIWREAPNEKLKEYKLTTVTYGTASAPYLATRVLVAIADNCKNE
FT                 AIKEIIKNDFYMDDLMTGADSILDAKKHVKEVTEEFDKVGFNLRKWITNIP
FT                 EIVEGVKDNEENKVLTIEENESVKTLGLKWEPVRDEFRFNFHYGPVKKTNK
FT                 RIVLSTLAKMYDPLGWLSPVTIVGKLFMQKLWLSDKNWDEELSDQDTREWN
FT                 AFKENLTALESIRIPRWLNSQHANPMQIHGFADASEKAYAAVVYAKVDGAS
FT                 IIIASKSKVNPKKNRKTIPKLELCAAHLLAKLMERIKIAVGSEAESYAWSD
FT                 STITLAWIKNGDNKDKFIRRRTDEIRKVKEIKWRHVKSEDNPADVASRGIS
FT                 AEKLKDFEIWWKGPQWLVKSREDWPKEEIEEKRVVGTTFIIDKANIIKELL
FT                 HKYSCMHKLERVIAYVLRFIQIKTKNTKFSPHLTVNEIKIAKILVLKKQQA
FT                 FQFSAEIASLINKKEIETKSKILGLNPFLDKDGLLRVGGRLQNSNAEFEVK
FT                 HPLILNKCHLTSLIINDAHKETLHGGINLMRNYIQRKYWIFGLKNCLKQKL
FT                 KECVTCARYRQNTAEQIMGSLPKHRATMSHPFTNTGVDFAGPYQIRCSRNR
FT                 GQKSYKGYIAVFVCMATKAIHLEVVSDLTSDAFLAALRRFFSRRGKCAKIF
FT                 SDNGTNFVGASRKLDEEYQRALKDNIKVIPILEREQIEWHFIPPAGPHFGG
FT                 IWEAGVKSVKYHLKRVIGDNNLTYEEMATLLCQIEAVLNSRPLYTATNDID
FT                 DLDVLTPGHFIIGRPIYGPIETISDERIGNLDRWKLIQKMKREFWIKWKND
FT                 YLHTLQQRNKWKKGMQNIKKGQIVLIKDENCHPARWPLGKIEEIHKGRDDR
FT                 VRVVTIKHQDGSIKRPITKICPLAGIESEENDSEKPPIETRSSRGTPRIPK
FT                 LGLMAVMLTLMLFCQASSANIAARRTEKWSIEKMNSSTSIYLEPLGDVEII
FT                 ASSWDLIVYYNMDPYFQMIRKGKELVGKMRVVCGKLYTFEEQCNNVLDNTD
FT                 RQIADLEENNKLFMAQDNKRQKRAPFEFMGSLYHILFGIMDAEDRETLEGN
FT                 MKNLLENQHNLDDLIKRQTSVVESTVNILKRTTEEINVNFKSMSTRVENIT
FT                 EALKESYYVYKESINFFMVTKQLSSMIDECDKIQAGVISLLIDINHGRLNP
FT                 NILKPIQLKAEITKIKDSLLETLVLPGKRTGTELKEIYSLLTAKGIFVDNK
FT                 LILNVKIPLFGRHPSHLFRIIPMPVEHERELIKVDLSSRYLVYNFEIDSYH
FT                 SMTEATLNKCQKWQTNKRVCEGNWPWSSANDNACEIAPFKPNSHSTCVYKK
FT                 MPETGSFWVELEKKGSWLFKVPVNTNARIQCINSNQEIIDLPQQGILTIMN
FT                 GCTVRTDDKILIPHHSIHSEDYKTISSSYISNINKIPKIVWNPISVPLINH
FT                 TNEIHKLQNELTMLKESHHELKGLKFHHVSGHAALIIGIIIMLILIIYTIR
FT                 RIKVARRLQAIALPYSL"
XX
SQ   Sequence 7887 BP; 3050 A; 1230 C; 1607 G; 2000 T; 0 other;
     ttttggtcct tcgagactct ccggtgtttc ccccctgtgg taagagcacg gagttaaacc        60
     agctccttaa agactgcaga agtgtctagt acacctacag ctaaaggtag cgaaaataaa       120
     aaaaaactcg agttttccct cctgaagtaa gaagaccgag tataatatta atgaaacaaa       180
     agtttcaata aataagcaaa aatacatgct atacaggcag tatttttgta atagatatca       240
     acaaaatatc tatagtgcgt gaaaaattta cgcggcggtg gcgtattcga ggccgaaaca       300
     tcgaataaaa aaataaaaat ttcccaacat cgaaaaagtg tgaaaagtga aggccagcaa       360
     gaaataaaaa aagcggccca ataaaaaaaa aaaatttctg acaaaaactg aagatataaa       420
     agttggtgtg tgttcaaaaa aaaaaaaccc ccacgacaac tgatcgttgg agcaaatatc       480
     attgcctaaa gaaaagcaaa agtgcagttc tcatccgatc agcaaaatta agcagcatca       540
     acggcagtgg caatacagtg ttatcaacag cagcagctat cagccgccac aacaacagca       600
     acaacggcgg aagacatcag cagcagtaac agctatcagc cgcgacatca acagcaataa       660
     cggcggaaga catcagcagc agtaacagca acaccaacag cagcagcagc atcagataag       720
     tcagaaattt aagtttttat taaataatta gcacaagatg ttgtcggaat acacgataaa       780
     gctactagag gctcaagtcg cagtagcaaa tgaaataaaa tcgattgaag ctggtatatt       840
     gaccagcgac gtaatctgta ggctaagaga gctcaaaata gttgttacag caaataattc       900
     aaaattaatg ggctgtggag tagtcgatca tgactacttc aataaaaagc agtaccaaca       960
     aattttaaaa aatatagacg acatagaaag aagctatgtc gaagtaaagt ctgcagaaac      1020
     tataaatgtg caggtggaga ctggaacatt gaagagagac ttggagccaa aagttgacca      1080
     aagtctagaa gaagtagttg aggatttcgg cagattagaa gactatttga aatctcattt      1140
     agaacaagct caaaaggagt tagatcaggc tggctggtgc gagtgccaaa taaggaaaga      1200
     taggatggaa taccttagga aaaaactccg taaaaatgtt acggagtatt ataaaaatta      1260
     tgagtcaaac ttcaaattcg acgatgaggt cgccgatttg gagtttgaat ttcagtgctt      1320
     gttaagagcc ataaacacga ggatgcaaga tattactaat gaaaaaagta gcgtcagtaa      1380
     agaggcagga attaagaaag aaaatgaaga ttttccagtt cttccaaagg cagaagtacc      1440
     cacattctca ggattagata aagagtggga cggtttttca caattattta gtgagattat      1500
     acataataga gatggtctga gtacatctct aaaatttaca tatttaaaaa tggctataaa      1560
     aggtgaagca aggagtatgg ttgctcacct attgacaggt ccagtcgaaa attataatgc      1620
     cgcttgggaa ttgctgacca agcggtatga aaataagcga aaaatatttt cggatcagct      1680
     gaatcgtttg ctggatttac caatactaga caacgattca gcaaaacaaa ttaagatgtt      1740
     ttcggactca ataaatgagg cgattcatct tatcaaatta aagtcacaat tgacagaaga      1800
     agttgatgtg atatttgcgc acattatatt gaaaaaattc aataaagatg cattacaatt      1860
     atatgaaagt catataaaaa aaactaaaga gattcaaaga ttacccgatg taatggaatt      1920
     tctagaacaa cggtacactt ctctttactc atcgcaggag gaagagaaga agccgttgaa      1980
     aaaaggagtg ccatataata gcagtattaa agaaagttgt ccgctttgta aaatggcagg      2040
     ccatacaata atgcaatgct ataggtttaa gagaatgagt ccgatagaaa gaggccagac      2100
     tatacaaaaa caccgcctat gcaatagatg ctgtaggcat gagatgtata agaaatgctc      2160
     atcggaaatg ttttgtggga tttgtaaaaa accccatcat acgatgctac atattcccta      2220
     cgaaaaaagg gaaaatgtta atacttgttt gacaaaaaaa caagcgttct tagccacggc      2280
     aattattaaa gtaagagctg taaatggtgg ctatgaaaat cttagagcgt taattgattg      2340
     tggttcgcaa tgtaccatta tttcagagga agcagcgcaa gcattaaaat tagcgcgaaa      2400
     aagagtcaac accgaggtta gtggagtgtc atctacagac tcttgcactt ctaaatacaa      2460
     agttaattta tctgtgcaaa ctcgggatgt tggtaaaaaa cctctaaata ttgaagcaat      2520
     aattctccca aaactaatga aagctttgcc tataaagtcg ttcaatatag acaaaacaaa      2580
     atggcaaaac tatgtgttgg ctgaccctaa ctttaataaa ccaagtaggg tagatatagt      2640
     tattggagta gatctgtacg cccatgtggt aaaagacgga gtagtaaaaa tagatggact      2700
     acttggtcag aatactgaat tcggatggat tatatccggt tgcaccaaat caaagggcga      2760
     taacttgatt gtggcaacaa caatcgaagt aggggactta gagcggttct gggaagtaga      2820
     aagcgacagt tctgatgagg aagaagatgt ttgcgagaag cacttcttgg caaccacaaa      2880
     aagagaggaa actggaagat atgtggtaaa aataccattt aaaaaagata aggatctcgg      2940
     agattcaaaa gcacaagcta tggcgcgatt ttataattta gaaaagaaac tcagcaaaaa      3000
     tgaaaaatta aaagaaaatt atataaaatt catgcatgaa tatatcaatt taggacatat      3060
     ggtagagtca aaaaaagagg gaaaatatta tttgccccat caaggagtca taagagattc      3120
     cagtctaacg acaaaactca gagtggtttt tgatgcatca gcaaaaacca caaacaacaa      3180
     aagtctaaat gatgtcatgt gggttggacc aagagtccaa aaagacatct ttgatattat      3240
     agtgaaatgg cgaaagtggc catatgtagt atctgcggac attgaaaaaa tgtaccggca      3300
     aattaaagtt gatgaagaag atcaacatta tttacatata atctggagag aggctccaaa      3360
     cgaaaaatta aaagaatata aacttacaac cgttacgtac ggtacagctt cagcacccta      3420
     cttagcgact agagtgcttg ttgcaatagc tgataattgc aaaaatgaag caattaaaga      3480
     aatcataaaa aatgattttt atatggacga cctaatgaca ggtgccgatt ccatattaga      3540
     tgccaaaaaa catgtaaagg aagttaccga ggagtttgat aaggttgggt ttaacttaag      3600
     aaagtggata acaaatatcc cagagattgt tgagggcgtt aaagataatg aagaaaataa      3660
     ggtattaacc attgaggaga atgaatccgt caaaacatta ggacttaaat gggagccagt      3720
     tagagacgag tttaggttca atttccatta tggacctgtt aagaaaacta acaagagaat      3780
     agttctatcc accttagcta aaatgtacga ccccttaggc tggttgtctc cagttacaat      3840
     tgtcgggaaa ttatttatgc aaaaactttg gctatcagac aaaaattggg atgaagaact      3900
     atcagatcag gatactcgtg aatggaatgc ctttaaagaa aatttaacgg cgctagagag      3960
     cattcggata ccaagatggc ttaattctca gcatgctaat ccgatgcaaa ttcatgggtt      4020
     tgccgatgca tccgaaaaag cttatgctgc cgtagtgtat gccaaggtag atggtgcttc      4080
     aattataata gccagcaaaa gcaaggttaa tccgaaaaag aatcggaaaa ccattcccaa      4140
     gttagaactt tgtgcggctc atcttctagc gaaattgatg gaacgaataa aaatagcggt      4200
     tggaagtgag gcagaaagtt acgcttggag tgattctacg atcactctag cttggataaa      4260
     aaacggagac aataaagaca agtttattag acgtcgaacg gacgaaatta ggaaagttaa      4320
     agaaattaaa tggagacatg tcaagtctga agacaatcca gcagatgtag cgtcaagggg      4380
     aattagtgca gagaagctga aagattttga aatttggtgg aagggtcctc aatggttggt      4440
     aaaatctagg gaagattggc caaaagagga aattgaagaa aaaagagttg ttggcacaac      4500
     gtttataatc gataaagcta acataattaa agagttattg cataaatact cgtgtatgca      4560
     taaactagag agagtcattg catatgtatt aaggtttatt caaatcaaaa ccaaaaatac      4620
     aaaattttca ccacatttga cggtcaatga aattaagatc gctaaaatat tagtattgaa      4680
     aaaacaacaa gcttttcaat tcagtgcgga aatagctagc ctaattaata aaaaagaaat      4740
     agaaacaaaa agtaagatat taggcttgaa tccattttta gataaagatg gattactgcg      4800
     agttggaggt agattacaaa actccaacgc agaatttgag gttaagcacc cattgatttt      4860
     aaataaatgt cacttgacgt ccttaattat caatgatgca cataaagaaa cattgcacgg      4920
     tggaattaat ctgatgcgga attatatcca gcgaaagtat tggatatttg ggcttaaaaa      4980
     ctgtttgaag caaaagctta aagagtgtgt tacctgcgct aggtacaggc agaatacagc      5040
     agaacaaatt atgggaagcc tgccgaaaca tagagcaact atgtcgcacc cttttacaaa      5100
     tacaggggta gactttgccg gaccttacca aatccggtgc tctagaaacc gtgggcaaaa      5160
     atcgtataag ggatatattg ccgtatttgt gtgcatggcg acaaaagcta ttcatttgga      5220
     agtcgtcagt gatctaactt cagacgcctt tctagctgca cttagaagat ttttttcaag      5280
     aagaggaaaa tgtgcaaaaa tcttttccga taatggaacc aattttgttg gagcttcgcg      5340
     aaaattagac gaagaatatc agagagccct taaggacaat ataaaagtga ttccaatatt      5400
     agaaagagaa caaatagagt ggcactttat ccccccggca ggacctcact ttggaggtat      5460
     ttgggaagct ggggtaaaat cggtaaaata tcacttgaaa agagtgattg gggataataa      5520
     tttaacctat gaggaaatgg caaccctctt atgtcaaatt gaagctgtac taaattcacg      5580
     accgttgtat acagctacaa atgatattga cgatttggat gtattaacac caggtcattt      5640
     tattattgga aggccaatat atggccccat agaaacaata tcagatgaaa gaattggaaa      5700
     tctagataga tggaaattaa ttcaaaaaat gaagagagaa ttttggatta aatggaaaaa      5760
     tgattattta cacactctgc aacaaagaaa taaatggaaa aaaggaatgc agaatattaa      5820
     aaaaggacag atagtattaa taaaagatga aaactgtcat ccagctagat ggcctctggg      5880
     gaagatagaa gaaatacata aaggtaggga cgatagagtc agagtagtca ctattaaaca      5940
     tcaagacggg tcaatcaaac gacctattac taaaatttgt ccattagctg gaattgagtc      6000
     tgaagaaaat gattcagaaa agcctccaat agaaaccaga agtagtcgcg gcacacctcg      6060
     aataccaaag ctaggtctca tggcagtaat gttaacgctt atgttatttt gccaagcatc      6120
     aagtgcaaac atagctgcca gaagaacaga gaagtggtca attgaaaaaa tgaacagttc      6180
     cacgtcaata tatttggaac cgttggggga cgtggaaata atagcctcat cttgggatct      6240
     aattgtctat tataatatgg acccatattt tcaaatgata agaaagggga aagaattagt      6300
     tgggaaaatg agagttgtgt gcggtaaact ctacaccttt gaagaacaat gcaataatgt      6360
     tttagataac actgacagac aaattgcaga tctagaggaa aataataaat tgtttatggc      6420
     tcaggacaac aaaagacaga aacgagcacc atttgagttt atggggtcac tttatcatat      6480
     attattcgga ataatggacg ccgaagatag agaaactttg gaaggaaata tgaaaaatct      6540
     attagaaaac caacataatc tagacgattt aattaaaaga caaacgtcag tggtagagtc      6600
     aacagtaaat attctcaaaa gaactactga ggaaataaat gtcaacttta aaagtatgag      6660
     caccagagta gagaacataa cggaggcttt aaaagaaagt tattatgtat acaaagaatc      6720
     tattaacttc tttatggtaa caaagcaact aagttcaatg attgacgagt gcgataaaat      6780
     ccaagcagga gtaataagtc tcttgataga tattaatcat ggtagactaa atccaaatat      6840
     tttaaaaccg atacaactaa aagcagaaat tacaaaaata aaggatagtt tattagaaac      6900
     actagttctt ccaggaaaaa gaacagggac ggaattgaag gaaatttaca gcctattaac      6960
     cgcaaaagga attttcgtag ataacaagtt aatcttaaat gtgaagatcc cactgtttgg      7020
     tagacaccca tcccatttgt ttaggattat tccaatgcca gtggagcatg aaagggagtt      7080
     gatcaaggta gatttaagct ctaggtactt agtatacaat ttcgaaattg attcctatca      7140
     ttcgatgact gaagctactt tgaacaaatg ccaaaaatgg caaacgaata aaagagtatg      7200
     tgaaggtaat tggccttgga gtagcgccaa tgataatgct tgtgagatag ccccgtttaa      7260
     acccaatagt cattcaactt gtgtctataa aaaaatgcca gagacagggt cattttgggt      7320
     cgaattagaa aagaaaggta gttggctctt caaagttcca gtaaacacta atgccagaat      7380
     tcaatgcatt aattcaaatc aagaaataat tgatctacct caacaaggaa ttttaacaat      7440
     aatgaatggt tgcactgtgc gaacagatga taaaatatta attcctcatc acagtattca      7500
     ttcagaagac tataagacaa tttcatcctc ttatataagt aatataaata aaataccgaa      7560
     aattgtttgg aatccaatat ctgtaccgtt aattaaccat acgaatgaaa ttcataaatt      7620
     acaaaacgaa ttaacaatgt taaaagaaag tcatcatgaa ttaaaaggac ttaagttcca      7680
     ccatgtgtct ggacatgctg ctttgattat cggaataata attatgttaa tattaataat      7740
     atataccata agaagaatta aggtagctcg aagactgcaa gcaatagcac ttccctattc      7800
     attgtaatat accttaagat aatcatcgac aaaaaaaaaa atgtacaaat aaaaactaag      7860
     ccatgccact tttggccctt tgcagaa                                          7887
//
ID   BEL-10_DAzt-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-404
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 789-789 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 404 BP; 152 A; 78 C; 66 G; 108 T; 0 other;
     tgttcaaaca tgaacacatt attgtactta aagaatacac attcacggag ataaatacaa        60
     aaccaatcga ttctaagtaa aaaacataca taaagtataa aatttatgac tgttagggta       120
     cgatctgtca actcataagc aagacacgac accccaaagt caagtgcagt aagcacttaa       180
     gaccctaatt tagtctaaaa ttactgatgc ttgcatgcat tcagttggtc actcacagca       240
     gcgttgcagc cgatccgtgg gtctagcgat aagaatagaa tacaaaattg tccccatcct       300
     acattgtaaa agtatatata aggcacgacg ttgaagaaat aaaaccagat tgaatttaca       360
     actcatctcg caagtgttta gatttttctt gtaaggtcta aaca                        404
//
ID   BEL-10_DBp-I repbase;    DNA;    INV; 3645 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3645
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 642-642 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(678..1214,1190..1660,1664..2881)
FT                 /product="BEL-10_DBp-I_1p"
FT                 /note="DUF1759 and protease."
FT                 /translation="MSTKDKIPIIEDQVRLTRQIDALLAKNSYSEEDREAL
FT                 KNLEQKAFTNHNHLVQLGPVEHDYFLKNHFESMLSNIKSASDKIKKYIGQD
FT                 ELFLRLEGAIKNLEDYLEXTYVEIQERKNETFPIRIKKLRMFLSKIDTVSD
FT                 LXNIEGLNNKYMSKIIELKDDVEIHIELMDNKIQEKTLTRNPRENVNKVEG
FT                 GSPRMDELPSLPKIEVPNFSGNSKDWDHFYELFKELVHSRTDLSPSLKLSY
FT                 LKSALKGEARNVVSHLLLGSGNNYDAAWELLIKRYENNRKIFSDQLNRLIE
FT                 LPKINLDSYRHLKNTIDSINESIYMMRLKANLTEESDCIFAHIIKKLNIEA
FT                 LQQYEGQVKKSSEIQNLKDVTEFLDQRLSSLPSVENEVLTKNINTSDQTCP
FT                 MCQMPGHQLVHCYKFKALSPQERRDVVKKWNWCHLCLKHSSNIKCTSELVC
FT                 SYCQNNHHSMIHVNKAIVNTCVTSEQVLLATAYVQIKGQDGEFKKFRALID
FT                 NGSQSTLISKKAAQKLKLPKIKSPTQISGVSPNGSCVSNHKLKLTFKKNSK
FT                 YSKEFSTNAIIIPSLKQTLPTNNVNVNKFDWKGYYLADPNFDKPGQIDLII
FT                 GADLYPQIIMPKIVKRGLLLGQKTIFGWIVSGRTRSNSIKKSIISTALVNT
FT                 IQDWRIERGKYVEPSIQKYKGKKEFKNEKEFEVVRPKYKICNLSWCPLGKH
FT                 KIFQEERDKNNSKKFQFRNFKWLYNLPNSCMKELDRKIIYFQ"
XX
SQ   Sequence 3645 BP; 1493 A; 596 C; 588 G; 944 T; 24 other;
     tttaaaaacc gtagtcccct gttgtttccc cccaagaggt aaggaacaca gggtataaaa        60
     taatataaat gccaatgagc ataaagaaaa aatttttttc gaaaagtgtg tgtttatccc       120
     ggaacaactc cggaataaaa aattatataa aaattatata tatttgtgtt ggcgtatccg       180
     aggccctaca tcggaaaaat taaaagttac aaaaaaaaaa ttgtttatat aaagtgtata       240
     aactttgtac acagtgagtg tggaaaaaat aaaacccaaa aaacccccaa gcaacatccg       300
     ccaaaataat aacaacaaac atacaccaaa aataaacaaa ccaacaccaa caaccgttaa       360
     agttaaaaag ctaaaaaaaa aacatccaca aaaattaaac caaaaaacgt ccacaaaaaa       420
     catacaaaaa caatagtaac acaacaatag taacggcgac atcgagaaag gcaacmcatc       480
     aggagcagca gcggcaacag caacaacatc aggagcagca gcggcagcgg caacaacatc       540
     aggagcagca gcggcaacgg caacacaaca tcagcagcaa taattagaaa atagtcctcg       600
     gcaagtttcg tttttatttt ctatatataa cacttgaatt kwgttttaga acttaattta       660
     atttaaaawa atatataatg tcgactaagg ataaaattcc aattattgaa gaccaggtgc       720
     gcctcacccg gcaaatagat gcgcttctcg caaaaaattc atattcagaa gaggacaggg       780
     aggcattaaa aaatttggag caaaaagcct ttacgaacca taatcatttg gttcaactcg       840
     gtcctgtaga gcatgactat ttcttaaaaa atcacttcga aagcatgcta tcaaatatta       900
     agtccgccag cgacaaaatt aaaaaatata ttggccagga tgagcttttt ttgaggcttg       960
     agggggctat aaagaacctc gaggattacc tcgagawaac ttacgtggag attcaggaaa      1020
     ggaaaaatga aacctttcct ataagaatta aaaaattaag aatgtttctt agtaaaatcg      1080
     atacagtgtc cgatttamta aatattgaag ggctcaataa taaatatatg agcaaaatta      1140
     tagagctcaa agatgatgtt gaaatacaca tcgagctaat ggataataaa atccaagaga      1200
     aaacgttaac aaggtagaag gtggtagccc tagaatggac gaactaccta gcctaccaaa      1260
     aattgaggtc cccaatttct ctggaaattc caaagattgg gaccattttt atgagttatt      1320
     taaggagctg gttcattcaa gaacggattt aagtccatcc ttgaagctaa gctaccttaa      1380
     aagtgctcta aaaggggaag cacgaaatgt ggtttcccat ttattgcttg gctcaggcaa      1440
     taattacgat gctgcctggg aattactcat caagcgatat gagaataata ggaaaatatt      1500
     ctcagatcag cttaatcgcc tcattgagct tccaaaaata aatttggact catataggca      1560
     ccttaaaaat acaattgatt caatcaatga atcaatttat atgatgcgcc taaaagcaaa      1620
     tctgacagaa gaatcagatt gcatttttgc gcatattatt taaaaaaaat taaatattga      1680
     ggctctacaa cagtatgagg gccaagttaa aaaatcaagt gagattcaaa atttaaagga      1740
     tgtcacagag tttttagacc aacggcttag ttcgttgcca tcagtggaaa atgaggtcct      1800
     aacaaaaaat attaacacaa gtgaccaaac atgcccgatg tgccaaatgc ccgggcatca      1860
     attagttcat tgctacaaat ttaaagcatt aagtccacag gaaagaaggg acgttgttaa      1920
     aaaatggaac tggtgccacc tatgtttaaa gcacagttca aacatcaaat gtacaagcga      1980
     gctagtgtgc tcgtattgtc aaaataatca ccatagcatg atccacgtaa ataaggcaat      2040
     agtgaatacg tgcgtgacct ctgaacaagt gttgttggcc accgcttatg ttcaaataaa      2100
     aggtcaagat ggtgaattta aaaaattcag agctttgatt gacaatgggt cacaaagtac      2160
     tttaatttct aaaaaggcag ctcaaaaatt aaaattgcck aaaataaaat ctcccacaca      2220
     aataagtgga gtatcaccaa atggttcctg tgtttcaaat cacaaactaa aattgacatt      2280
     caagaaaaat agtaaatatt caaaagaatt tagcacaaat gcaattatta taccaagttt      2340
     aaaacaaact cttcccacaa ataatgtaaa tgtaaataaa tttgattgga aaggctatta      2400
     tttagccgat cccaatttcg ataaacctgg ccaaattgat ctaataattg gtgcagattt      2460
     atatccacaa attattatgc cgaaaatagt aaaaagaggt ttacttctcg gacaaaaaac      2520
     gattttcgga tggatcgtgt caggtcgcac aagatctaat tccattaaaa agtcgattat      2580
     ttctacagcc ttggtaaata caatccaaga ttggaggata gaaagaggaa aatatgtgga      2640
     accttcgata caaaaataca agggtaaaaa agagtttaaa aatgaaaaag aatttgaagt      2700
     tgtccgacca aaatacaaaa tctgtaattt atcgtggtgt cctttgggga aacataaaat      2760
     atttcaggaa gaaagggaca aaaataatag taaaaaattt caattccgta atttcaaatg      2820
     gttatacaat ttacctaatt catgtatgaa ggagttagat agaaaaatta tctattttca      2880
     atagtagaaa caaaaagaaa aatagccaac acgaaataga taaaaatcaa accaaaccga      2940
     aatagcaaaa tcaatttgaa aggggaattc taaaattagc ttgaagtcct ctaaaacctt      3000
     ttgaaaatag ctcacctggc caaacaaaca gaagatataa aagcatagaa ttttgaatta      3060
     aaaaaatgtc gattttcatc atttgtcagg tcatagctcc ttatttttgt aataataatc      3120
     attactgtat tgattatatc ctatttaaga aaactaaagt caaaaagaca attgttgaat      3180
     atagcattac catccccaat gccaagtatt aaaaaagaat aaaamkaaaa wtamamwaaa      3240
     aawaagaagw aagtttgtaa aaaacaagaa cctaatttct gtatcctttt gtagaaggtg      3300
     attacaaaaa ttaaaatgaa tataaaaatt acagtccact aaaatcgaag aaaacatwaa      3360
     tatttcaaat tacatttwga atacacacta aaatataaca aaggmacttt tktggcccct      3420
     cgcaggatgt tcaagcatwa ggttgaacat gaaattaaat atttggaaaa ttgcaattsa      3480
     aaataaaata watatasagt ccactacatt ttgttatcga mcaattataa taattttcta      3540
     gtaccgagga aatagaattc ataaatgtga aaacaaaaat acacatatac ataaataaaa      3600
     tgttaatcta aaacaacaca cacctttttg tggccctttc cagaa                      3645
//
ID   BEL-10_DBp-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-322
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 643-643 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 322 BP; 104 A; 58 C; 59 G; 90 T; 11 other;
     tgttcaagca ttgaacacta ttttatatam aaattcgwaa gwtagagttt caagggatcg        60
     gacccatgaa atawgagaca aacakcatgg tctaaaamcg atcccctgca gcctatcata       120
     aataacacaa acataagcgc atccgcttat cgcacttgag maagggtcgc atagcwtgtc       180
     aacgtgcggt gcgttgataa gtagttttaa atagktttaa gattttcatg tatcttactt       240
     ataagagaac tktacmgaat aaaatcagtt ttgaaacgga actcattgga gtacgacctt       300
     tattttgggg ctcctcttaa ca                                                322
//
ID   BEL-10_DEl-I repbase;    DNA;    INV; 7829 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   02-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DEl-I.
XX
NM   BEL-10_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7829
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 440-440 (2012).
XX
RN   [2]
RP   1-7829
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1327..2652
FT                 /product="BEL-10_DEl-I_1p"
FT                 /translation="GQFPDPYSSMPIGDKKNLKTTPRVSLERPRSASPRVS
FT                 QGKQEPKALISNAKSDSSLNAPVVPQIKVTRSSVKMAQRDAVLDKFISISD
FT                 RLSTFEARINVSGASDPSVHTCQVRRDQIKALWDRVENEYEVCSDAILAGG
FT                 GEAHAMLELLQAKYEHCYEVYESCTAKLSEQIERVKTQTANANSNTLPIPF
FT                 SSGCRLPPCDTEVFEGDYLKWPTFRDLFTAVYVNNPRLTAVEKLFHLNAKT
FT                 SGEAKAIVSKSPLTNEGFDSAWEALRDRFENKRLLVNSQLKLLFNLGSVNP
FT                 ESGQALKDLQSTIQGCLIALAHSNISTENWDCLLVFLCASRLPKLTLSLWE
FT                 QSLSSKSDIPTWDEMNTFLSERYRTLEAIEDMKPSHSNHSTAKSQPVPRKL
FT                 NSFEAKVVTKPKNCDLCSKESHPVRLCQRFLQMSVDARTIYIKKNSFA"
FT   CDS           2538..6755
FT                 /product="BEL-10_DEl-I_2p"
FT                 /translation="TKELRPVLKRESSSALMPAFSPDVCGCANNLHQKKQL
FT                 CLNCFARGHQLRDCTSTHSCFTCRARHHTLLHKGNPISRGSTSASSSSASP
FT                 QNPAVQGAATGLENPPSVQNYFATGARAVLLGTAIIDICHLGTNYRARALI
FT                 DSGSEATFISERLFNLIKLPFRLIQAQVSGLNQTVSAQATKLCHFSIRAPN
FT                 KPGLQLETTAYVLPELAGMLPSYPIPRDALVDLPAIPLADPTFLESSQIDV
FT                 LIGADILPSVLLSGTRTNICGSLLGQETIFGWVLTGPVSNASVQKRVAAFT
FT                 TQITETSDRVLEKLLTKFWEVENIPTKRVKESDSYCESNFLQTTTRDASGK
FT                 YVVTLPFREPENFGSKLGHSRSIALAQLLRNENRLKRDFPLKEQYDSVIQE
FT                 YLDLGHMREVPPSYDTPNYYLPHHAVIKPESTTTKLRVVFNASSPSANGTS
FT                 LNDILHAGPVLQSDLTIQILKWRYFQYVFSADITKMYRQIWVDPKHTPFQR
FT                 ILFRNKEGEVSDFELKTVTFGVNCAPFLALRVLQQLADDVETEFPKATNII
FT                 RHFMYVDDVLAGANCIQEARLAISELCHAFNLAGFPLRKWTANQNSILEDI
FT                 PNEHLLHDDFRDLNSESTTKTLGVRWNATSDEFYFVPPLVSIESTYTKREV
FT                 LSQIAKLFDPAGWLSPFIVRSKIFMQEIWLQQLGWDENIPTEMNQRWQEFL
FT                 RSYSELKQIRIPRWVGFQPEVKVEHHGFCDASQKAYGAAIYLRVEVGHNIM
FT                 THLLTAKTRVAPVKTVSLPRLELCGALLLSEMIAAILPNMPISNSDIFCWT
FT                 DSTIVLAWLNKPACQWATFVANRVTKITQVTSAEHWAHVRSEHNSADLASR
FT                 GVSLRDLVHSQLWWKGPDWLQQPKGQWPTQGLATPVTDLEQRAVKVNFAKA
FT                 LSDDFLERFSKLDKALRVLAYVLRFTQRCRKMPRGPADRPTKEEVREAERA
FT                 LILYAQREEYTQELKFLNDKCPIPVSSPIANLFPFLDQHGLLRACGRITAS
FT                 TALQYDERHPIILPYNCRLSRLLVLFSHQISLHGGNQLVVRLIRSKYWIPK
FT                 LKNLVKAVLNSCKVCTIYKKRLQTQLMGDLPTDRVSFSRPFTYTGIDYAGP
FT                 FEIKNYTGRACLITKGYVCVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVA
FT                 RRGCPQRVHSDNGKTFVGAATLLSRDFMQAIKESVTDAYSHQGLLWRFIPP
FT                 GAPHMGGLWEAGVKSFKTLFYKSTSSRKYTFEELSTLLAKVEACLNSRPLS
FT                 PMSENPSDLLALTPGHFLIGGPLLSTAEPEIKGDAKSIINRWQHLKALHQQ
FT                 FSARWKEEYLKELHKRNKWQNPSKDIQVDDMVVVKEDNMPSNDWRLGRVVS
FT                 VFPGADSRVRVVEIRTARGIIKRPVHKLVLLPMEAKAASVLPK"
FT   CDS           6852..7769
FT                 /product="BEL-10_DEl-I_3p"
FT                 /translation="MAPRPRSAQTLDDRRSRGTRSYRCRVCRGIHPLRKCN
FT                 RFLRLSTEKRLRAVIINKYCANCLAHQHSEEVCRSGDTCKKCGQDHHTLLH
FT                 MRESSSSRRQSISPVRPSVTASRPSASGSRSRGPTPSSRNRSRHSDQAEAP
FT                 TAAPSVASLLQHRSVQIIPTAIVVLDTGTNKYETGALIDPCSPVSTIDRSL
FT                 AAAFRLPTTSVGDETVCSATIRSRTGTFKIDVVLKVSPNFSTRTPIRALAD
FT                 DVRARFNDIRLADEQFHRPATISLVLGSDVYRDVIQPGFLNLDEGLPVAQS
FT                 TVFGWIVSGSCRQS"
XX
SQ   Sequence 7829 BP; 2176 A; 1941 C; 1685 G; 2025 T; 2 other;
     tttttggtcc ttcgagccgg atcgatctgc gatttccagc ggcaccggtg gattttcttc        60
     aatttcaaga ataaaaagat aagtacgatt ttactatttc caaccgatcg ccattttgcg       120
     actccacggt tttctttttt tccatttcca ttttttatgt acatattcac atacgtacat       180
     tccaaaatat attcacatac gtacattcca gaaacatatt tacatacgta cattccagaa       240
     acatatttac atacgtacat ttccgaaaac atattcacta cgtacattcc agaaaattat       300
     tcacatacgt acataattta aaataataat tttacatatc cacatttgca tattcgtgaa       360
     acatatacat atacgaaaat aaaatacaat acagtccaca accccccaac aaacatttcc       420
     agcaaacatc ccagccatcc cagtttatgt gtgttaamaa ataaacgcaa agtgatcaca       480
     catatttcaa attaatttta tctttgtcaa gtatttgttt acataaacaa cattaaacaa       540
     gtgtatgtga gaaataacca gacatatcaa gagggctacg cacgacacga cggagcagca       600
     aataaattta ataacgaaat actccagctc cacctgcgtt tttttttgta aagttatttc       660
     cttatacata tatacatata tatccaaagc ttgagcaacc aawtccactt gggacagtgg       720
     aaatattcaa caggtttatt gttacattcc attcattccg tcaaagcttg agcgaccaaa       780
     tccacttggg acagtggaaa tattcaacag ggttattgtt acattccatt cattccgtca       840
     catataaaac gccatatatt ggcatatatt aatattattg attattattt ataaacatca       900
     gtgcgccatt ccatacaaaa aataataata aataactcaa gcaataataa acaactcaag       960
     taacctgagg gcaaacaaag cataattaaa caataaatac gatattatat atataaataa      1020
     tacaccttaa aaattgtttt gttgtgttcc aactaacatt gtttattaat ttttccctat      1080
     cgagttacca agtagtcatt ggcaaatccc acagcagcgt gactattctg gatatataca      1140
     atttatattt ttgatatatt tcctatatgc tttgttccaa aaaattgcca ttcattccat      1200
     tccataaatt ccaggttttt atttactgct tattaaacca attcatatta aaataatttt      1260
     ggcatcaaga tcaatacgag tccattgatt ttaatataaa attgattctt attttactgc      1320
     gaataggggc aatttcctga tccttattct agcatgccca taggggataa gaaaaatttg      1380
     aagacaaccc cgcgggtaag cttagagcga ccacgatcag cgtcccctcg tgtgtctcag      1440
     ggtaaacaag aacccaaagc gttgatttcc aacgcaaaaa gcgacagctc cttaaacgct      1500
     cctgtagttc cacaaataaa agtcacgcga tccagcgtaa agatggccca acgcgacgca      1560
     gttttagaca aatttatttc gatctctgac cgtctgagca catttgaagc cagaataaac      1620
     gtttcagggg cttcagatcc ttcggtccac acgtgccaag ttcgacgtga tcaaatcaag      1680
     gcattatggg acagggtaga gaacgagtac gaagtatgtt cagacgcaat tcttgcgggg      1740
     ggcggggagg cgcatgcaat gttagaactt ctgcaagcca aatatgagca ttgctatgaa      1800
     gtttacgaat cctgtaccgc gaaactcagt gaacaaattg agcgagtgaa aactcaaacg      1860
     gccaacgcca attccaacac cctgcccatt ccgttttcgt ccggttgccg actaccgcca      1920
     tgcgacactg aggttttcga aggagactat ttgaaatggc caacatttag ggatcttttt      1980
     accgcagttt atgtcaacaa tcctaggttg acagcggtcg aaaaactttt ccatctcaac      2040
     gctaaaacta gcggcgaggc taaggcaatc gtatccaaat cccctcttac aaatgagggt      2100
     ttcgattcag cttgggaagc acttcgagac cgtttcgaaa ataagagact gctagtaaat      2160
     agccaactca aactgctttt taatttgggt tccgtaaatc ccgaatctgg ccaggcactg      2220
     aaagacctac agagcacaat ccaagggtgt ttgatagcgc tggctcattc caacatttcc      2280
     acagagaact gggactgtct cctggtattc ctgtgcgcca gtagattgcc gaaactgacc      2340
     ctttccttat gggagcagtc cctttcatcc aagtccgaca ttccgacctg ggatgaaatg      2400
     aacacgtttc ttagcgaacg ataccgaacg ctagaggcga ttgaggatat gaaacccagc      2460
     cacagcaatc actctaccgc taagagtcaa cccgttccca ggaagctcaa ctctttcgaa      2520
     gccaaggtag ttactaaacc aaagaattgc gacctgtgct caaaagagag tcatccagtg      2580
     cgcttatgcc agcgttttct ccagatgtct gtggatgcgc gaacaatcta catcaaaaaa      2640
     aacagctttg cctaaattgc ttcgcaagag gacaccagct acgtgactgt actagcactc      2700
     acagctgttt cacatgccga gctcggcatc atacactgtt gcataaaggc aaccccattt      2760
     cccgtgggtc aacttccgca agtagttcgt ctgcaagccc tcaaaatcca gcggtgcaag      2820
     gggccgccac cggtctagaa aatccgccca gtgtgcagaa ctatttcgca accggtgcta      2880
     gagcggtttt gctaggcacg gccattattg atatatgcca cttgggaacg aactacaggg      2940
     ctcgtgctct aatagactcg ggttctgagg caacgtttat ttcggaacgc ctgttcaatc      3000
     tgattaagct gccattccgc cttatccaag cccaagtttc gggcttaaat caaaccgttt      3060
     ccgctcaggc gaccaagctc tgccattttt ctattcgagc ccctaataag ccaggccttc      3120
     agctagaaac cacagcttac gtcttgcccg aactggctgg aatgcttccg tcgtacccaa      3180
     ttccacgaga tgcgctggtt gatttaccgg ccatccccct ggcagatcca acatttttag      3240
     agagttccca gatagatgtt ctgatcggag ccgacatttt accgtccgtg ttgctgagcg      3300
     gcacgcgcac caacatttgc ggctctctgc taggacagga gactattttc ggctgggtgc      3360
     ttaccggccc agtgtccaat gcatcagtcc aaaagcgggt agcagctttc acgacccaga      3420
     taaccgaaac aagtgacagg gtcttagaaa aacttctcac taagttttgg gaggtggaga      3480
     atataccaac aaagagggta aaggaatccg attcctattg cgagagcaat tttctccaaa      3540
     ccaccactag agacgcaagc gggaaatacg tggtaacgtt accgtttcgc gaacccgaaa      3600
     atttcggatc caaattgggg cactcgcgat ccattgccct agctcagctt cttaggaacg      3660
     aaaaccgttt aaaaagagac tttccactaa aagagcaata tgactcagtc attcaagagt      3720
     atttggatct gggtcacatg agagaagttc ccccgtctta cgatactcca aactattatc      3780
     ttccacacca tgctgtgatc aaacccgaga gcaccaccac caaactacgc gtggtattca      3840
     atgcttctag cccttcagca aatgggacaa gcttgaacga tattcttcat gctggtccag      3900
     tcctacaatc tgatttaacc attcagatct tgaagtggcg ttatttccag tacgtgttca      3960
     gtgcagacat tacaaaaatg taccgtcaaa tctgggtcga tcccaagcac acgccgttcc      4020
     aaagaatttt attccgaaac aaagaaggag aagtaagcga tttcgaacta aaaaccgtca      4080
     cctttggtgt caactgtgca ccgtttctgg cacttcgcgt actccaacaa ttggcagacg      4140
     acgtagaaac ggagtttcct aaagcaacca atattattcg gcattttatg tacgtagacg      4200
     atgttctggc aggggccaat tgcatacaag aggctcgact tgctatcagc gagctttgcc      4260
     acgcttttaa ccttgccggg ttcccgttga gaaagtggac agcgaatcag aatagcatac      4320
     tcgaagatat ccctaacgag cacctactcc acgatgactt tcgcgatctc aattccgaaa      4380
     gcactaccaa aacacttggg gttcggtgga atgcgacctc ggacgagttc tattttgttc      4440
     caccgctagt ttcgattgaa tctacgtata cgaagagaga ggttctttcc cagatcgcga      4500
     aactttttga ccccgcggga tggctgtccc cgtttattgt ccgctcaaaa atctttatgc      4560
     aagaaatttg gttgcaacag ttgggctggg atgaaaatat ccccacagaa atgaatcaaa      4620
     gatggcaaga gtttttgcgc agctattccg agctcaagca aatccgtatt cctaggtggg      4680
     ttgggttcca gccagaggtg aaggtcgagc atcatgggtt ttgtgatgcg tcgcagaagg      4740
     catatggggc cgcaatatac ttgcgggttg aagtaggaca taatattatg acacatctgc      4800
     ttaccgccaa gacccgagtc gcacctgtta aaacggtgtc ccttccacgg ctcgagctgt      4860
     gtggggcctt gttgttgtca gaaatgatcg cagctatcct tccgaatatg ccaatttcca      4920
     attccgacat tttctgctgg actgattcca ccatcgtcct cgcatggttg aacaaaccgg      4980
     catgccaatg ggccacgttt gtagccaacc gagtgaccaa gattactcag gtgacgagcg      5040
     ctgagcattg ggcgcatgtg cgatctgagc acaattccgc ggacctagcc agccgaggag      5100
     tttcgctgcg ggatctggtt catagccaac tctggtggaa aggaccggac tggttacaac      5160
     agccaaaagg ccagtggcca acacaggggc ttgcgactcc agttacagac ttagagcagc      5220
     gtgctgtgaa ggtcaatttc gcaaaggccc tatccgacga ttttctggaa cgattctcca      5280
     aattggacaa ggctctgcgg gtccttgcgt acgtgttacg gttcactcaa cgctgccgca      5340
     agatgccgag gggcccagct gaccggccta caaaggagga ggtccgagaa gctgaaagag      5400
     cccttattct atatgctcaa cgtgaggaat atacccaaga gcttaaattc ctaaacgata      5460
     agtgtccaat tccagtgtcc agcccgatag ccaacctgtt tccattccta gaccagcacg      5520
     gcctgttaag agcatgtggt cgcattactg cctcaacagc acttcagtat gacgagcgcc      5580
     atcctattat actgccatat aactgtaggc tttctcgtct gctcgtcctt ttttcacacc      5640
     agatttccct gcatggcggc aaccaactag tggtacgcct cattcgatcg aagtattgga      5700
     ttcctaaact caagaatctg gtaaaagctg tgctaaactc ctgtaaggtg tgtactattt      5760
     acaagaagag attacagacg caattaatgg gcgatcttcc gaccgatcga gtttcctttt      5820
     ccaggccttt tacatatact ggcattgatt atgcaggccc atttgaaata aaaaactata      5880
     caggcagagc atgcctcatt accaagggat atgtttgcgt gtttgtatgc ttctccacaa      5940
     aggcgatcca tttagagcct acttccgacc tcacaaccga gaagttcctc gcagcctttg      6000
     cccgattcgt agcgaggagg ggttgtcctc agcgggttca ttcggataat ggcaaaacct      6060
     ttgtgggggc agcgactcta ctttcgcgtg attttatgca agcgatcaag gagtctgtga      6120
     ctgatgccta tagccatcag ggacttttgt ggcgtttcat tccaccagga gctccacata      6180
     tgggaggact atgggaggct ggagtgaaaa gctttaaaac acttttctac aagtcgacgt      6240
     caagtcggaa gtatacgttt gaagagctct ctacccttct tgccaaagtt gaagcgtgcc      6300
     ttaattccag gccactgtct cccatgtccg aaaatccttc tgatttgttg gcgttaacgc      6360
     caggccactt tctgattggg ggtccgttgc tttccacagc tgaacccgaa attaagggcg      6420
     atgctaagtc gattataaat cgctggcaac atttaaaggc cctgcatcag cagttcagtg      6480
     cgcgatggaa agaggaatat ttaaaggaac tgcacaagcg caataagtgg cagaatccgt      6540
     ccaaagatat acaagtcgat gatatggtgg tcgtcaaaga agacaatatg ccatcaaacg      6600
     actggcggct cggcagagtt gtatctgtct ttccaggggc cgatagtaga gttcgcgtag      6660
     tagaaatccg taccgctcga ggaattatta aacgtcccgt ccataagcta gtacttcttc      6720
     ctatggaggc caaggcagcc tcagtacttc caaaatagtg ccttctgtcc tcatgctcca      6780
     aaattcgttc acgattgaca ctaaatgtac ttatcattta tttttttttt atatattaaa      6840
     gcattaaaac catggctcca cgacctcgca gcgcccaaac tctggacgac agacgttccc      6900
     gaggtactcg atcctaccgc tgccgagtct gtcggggaat ccatccgcta cggaaatgca      6960
     acaggtttct gaggctcagt actgagaagc ggctacgcgc cgttatcatt aacaaatact      7020
     gcgctaattg cctggcacat cagcactccg aagaagtatg tcgcagcgga gacacgtgca      7080
     aaaaatgtgg gcaggaccac cacacgttgc tccatatgcg cgagtcttcc agttcgcgac      7140
     gccagtcaat ttctccagtg cgaccttcgg taactgcatc acgaccatca gcttccggct      7200
     cacgctctcg gggtccaaca cccagctcgc ggaatcgttc ccggcattcc gaccaggccg      7260
     aagcgccaac tgcagctcca tctgtggcgt ctctgttgca gcatcggagt gtgcaaatca      7320
     tcccgacggc catcgtggtt ctcgacacag gaaccaataa atacgagacg ggtgccctga      7380
     tcgacccgtg ctccccggtg agcaccattg atagatcgct cgctgcggcg ttccggctcc      7440
     ccacgacaag cgtcggagac gagacggtct gttcggcgac gataaggtca cgaacaggca      7500
     ccttcaaaat cgacgtggtg ctcaaggtca gccccaactt ctccactcgc actccaatcc      7560
     gtgcactagc cgacgatgtt cgcgctaggt ttaatgatat ccgtcttgct gatgaacagt      7620
     ttcatcgccc ggcgacgata tccctggtgt tgggctctga cgtctatcgt gatgtcatcc      7680
     aacccgggtt cctaaatctg gatgaggggc tgcctgtcgc acaaagcact gtgttcggct      7740
     ggattgtctc gggatcctgt agacaatctt aaggcgccag acgtgtggaa aacttggttg      7800
     ctacgtttgc cgtcgcaagg gggggagaa                                        7829
//
ID   BEL-10_DEl-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   02-JUL-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-300
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7075-7075 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 300 BP; 91 A; 77 C; 58 G; 73 T; 1 other;
     tgtccgcgcc aaggaggggc cactgtcgaw attattcgtt aacagtcgag agcagttatg        60
     tccagatgaa ctctcatctc gctctcggtc tgttaacagt ctccaccccc gctctcctag       120
     cattagattt aagtagagtt aaggagttct aatttcgaag ccacaaagtg aagttgtgca       180
     agttaagtga aataagttat atgaaataaa aatcacattt aaaaaaaaag aacccagcga       240
     gtcgccattt ccaccagcat cctccacggg cagaaatccg ccaacccccc cagcttttca       300
//
ID   BEL-10_DMo-I repbase;    DNA;    INV; 8222 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-8222
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2968-2968 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1959..4355
FT                 /product="BEL-10_DMo-I_1p"
FT                 /translation="MSDRSSRAQLSVPASRLIKRSASASPIPSGKPQTTST
FT                 FKRSPVVTRSSPKPAVSVNMSLSDFIAAADRLIKFEARIDGPGDSNATHAA
FT                 QLRAFEIRRDRVKALWDDAEQQYKVCARALSQGASSGEVEAMEAKFDNCYS
FT                 VYERCTTHLGVQIDALSVSSTPPAPMSAPFASSGGCRLPPVDTEVFHGDYL
FT                 RWPTFRDLFTAIYIQNPRLTPVEKLFHLNSKTAGDANALVAECPLTNDGFA
FT                 SAWDALCDRYENKRLLVNSQLKILLNLPKVTKESGAALRELHGNIHRCVTA
FT                 IEQAQISTENWDCILVFLCTSKLPEHTRSLWEHSLTRKSDIPAWKDVSLFI
FT                 SEHARALEAMEGDRSLPKVPGSDPKSTVSNSHKKVHAFESQVHSKSKKCDL
FT                 CAKENHPVRLCPRFIQMSLAARETYIKRRQLCLNCFAQGHQLRDCTSIHNC
FT                 AKCKGRHNTLLHREGSTATSSSSGAAVTPGTSEVPRNVQSYFTADTPGVLL
FT                 GTAVIDVCHLGVTYPARALIDSGSEATFISERLFRLMKLPFRSVQTQVSGL
FT                 GHSVAAKSTKLCDFHIGTPLKPRLRIEASALVIPRLSGNLPSYPIPQQLLN
FT                 NLPDIPLADPLFFKSAQIDVLLGADILPSIVQGGFHPNLCGSLMGQETIFG
FT                 WILTGPVTKKPQESISAFTTRVTVLHDEKLDHLITKFWEVENLPKVASEPD
FT                 XACEDNFVRTTRRDKSGSYVVTRPFKNPDHPDLGHSRSIALGQFLKNESRL
FT                 SKNPTLKAEYEAILQEYLDLGHMRPVHHHQSEGGVQCIVPIFQWEEPE"
FT   CDS           4282..7233
FT                 /product="BEL-10_DMo-I_2p"
FT                 /translation="GQCTTTKVRVVFNASCPSSNGKSLNDILHPGPVLQSD
FT                 LTMQILKWQYYRYVFNADITKMYRQIRVDPKHTPFQRILFRKPDGNIGDFE
FT                 LSTVTFGVNCAPFLALRVLKQLANDVRSRLPLASKVISECMYVDDVLAGAH
FT                 SKEKVIATIAELIEALESAGFPLRKWTSNSMDCLKAIPKSHRLCEDFLELE
FT                 DSSTAKTLGLRWQAQADLFLFSPPDIPLQESYTKRSVLSQIAKLFDPAGWL
FT                 APFVIRAKIFMQALWLRGLDWDQPLPGDLLTQWQEFILSFSSLRDIRVPRW
FT                 VHFQPRATIQFHGFCDASERAYGAAVYLRVELGNQIFVNLLSAKTRVAPIK
FT                 SLSIPRLELCGAVLLTDLCSVLLPASPAVSFQSFYWTDSTIVLAWLNKPAC
FT                 NWTTFVANRISKITELTNPGDWHHVSSEHNPADLASRGAHPQELLSNPLWF
FT                 HGPDWLRLSQSHWPLVPALSLETALEQKAAKSHAATLTPPTEFTSRFSELH
FT                 RALRVTAWMFRFINRCRRSAPPPSQELSADELHFIQSRFISLCQKRVYAKE
FT                 ISCLRAQQQLPASSPLRNLNPFLDSKGILRACGRIRTSASLSYDERHPIIL
FT                 PSSCSFTKLLVRFTHRISLHGGNQLIVRLIRSQFWIPKLKVLIKSVINSCK
FT                 SCVVYRKRLQTQMMGDLPADRTTFTRPFTVVGVDFAGPFDVKNYAGRACLI
FT                 TKGYVCVFVCFSTKAIHLEATSDLTTEKFLAAFSRLVARRGCPQKIYSDNG
FT                 KTFVGAAKTLSRDFVESLRSEVLAKHSLHSLSWHFNPPSAPHMGGLWESGV
FT                 KSFKALFYKSTATTKYTFEELSTLLARIEACLNSRPIAPMSEDSTDLQALT
FT                 PGHFLVGGPLITITEPRITQDAMSILNRWQRLKALHQQFCFRWKEEYLKEL
FT                 HKRNKWQFAQRDLKVGDMVIVKDDNVAINEWRLGRVHLTHPGDDGKVRVAD
FT                 ILTSRGIVRRPVHKLVILPTDDNTPVMSN"
FT   CDS           7295..8176
FT                 /product="BEL-10_DMo-I_3p"
FT                 /translation="MPSAVQSVETPGINSFRCRVCRGVHALRKCRRFLGLP
FT                 AEKRLRAVLINKYCANCLAHQHSGQSCRSKAKCKTCGQSHHTLLHLPGARR
FT                 RQRRRPAAAPISGPTSSALAGTPTPQKGSRKGRRHQAASRSTREVTPPLST
FT                 LMQHKAVSILPTAIIILQTGVKDFDVRALIDPCSPTTRIHASLARAMGLSA
FT                 TSVGPGEVCTATICSKTSDFNIDAILQLDPQLNCRTPIRPIEHAANPAGIT
FT                 LADGNWAQPSTVSVVLGADVYPHVILPGIVPSTDGRPMAQNTVFGWVLSGS
FT                 CL"
XX
SQ   Sequence 8222 BP; 2076 A; 2205 C; 1696 G; 2243 T; 2 other;
     tttggtcctt cgagccggat atcatcaaca catccaccag cgattcttgg gagttctgag        60
     ataagtaatt gattgctttt cgtttcactg caacttgcat aggtcagtgc ataccggcat       120
     ttgttatacg acatttccgc catatatatt tgtatatata catatttgta ctttgtgcaa       180
     gttgcatccc actaatatat atattcttat atattagaca caaatctgaa tatatatatt       240
     cttatatatt caggtacgtg aagtccatag ccatacatac atacatatat gtatgtatgc       300
     actaaccttc aagtccgttg catattcaca tattccgaat ctttccgttt tgctaagaca       360
     taatacacaa tatcctttgt gtcttgtcgc agctcaacca taacattcaa tccaatcata       420
     tagtccgatt gcacatattt aattgcgatt tcactgcaat atatgtacgt acatacaagg       480
     ctcccattgc atatacatac acatatatat atgcacacct gtttgtacat tccgcaccat       540
     atatacatat attaaaataa ataaagataa aacagaaaaa acatatcctt gtcgttttat       600
     tataatttat tttaaatctt tatatttata tatttatata catatattta tatttgcatg       660
     ttaactctta tacgtgtgtg tgtgctaatt gtgtctccgc tttgctctgc catccacata       720
     taaaaataag gtagtaaaga tatgtacata catatatcca tatgaatgta caaatagagc       780
     agcaacacaa ttaacacata attaattaac ttattaacaa aacacattca gatttataac       840
     acttgcaaaa aaataataaa tatattccat ttgttgttct gtgtgcaaat gctagtgatc       900
     gtacttagaa aagttttcac ataaataccg ataacaagat tcatcgccag ccgccacaat       960
     tccgtggcga tactttgttt ctttagagat cgcagcgcgc aactattgtt tgcgagccga      1020
     tagttcttga tagcacgaat attcggtgat taattactac tttattgatt tttatttttt      1080
     gttttttttg tttcttttca cttccttgtt tatttattta aaaataagca cagctaataa      1140
     acttaattta ttctcgagct taatttattc taattagctc aagcaaaata ttctttttgc      1200
     ttattttcaa tttcaaatca agctaaatcc aacttaattt atcctaatta agttgattaa      1260
     ccttttcttc gaacttaatt tattctaatt aagtaactcg agcttaattt attctaatta      1320
     gctcaagcaa agtattcttt ttgcttattt tcgatttcaa atcaagctaa atccaactta      1380
     atttatccta attaagttga ttaacctttt cttcmaactt aatttattct aattaagtaa      1440
     ctcgagctta atttattcta attagctcaa gcaaaatatt ctttttgctt attttcaatt      1500
     tcaaatcaag ctaaatccaa cttaatttat cctaattaag ttgattaacc ttttcttcca      1560
     acttaattta ttctaattaa gtaactcgag cttaatttat tctaattagc tcaagcaaaa      1620
     tattcttttt gcttattttc aatttcaaat caagctaaat ccaacttaat ttatcctaat      1680
     taagttgatt aaccttttct tccaacttaa tttattctaa ttaagtaact cgaacttaac      1740
     ttattctaat taattcaacc aacttgatca ttcttgtgtt ttatttattt gctcaagcag      1800
     atttaggtga cccgcaattt attctgaatt gcttacagtt tctttgaatc atttggcgtc      1860
     caggccaatt ctgttgattt cattgagatt tttcatcctc gttcgctcgt aaacttctct      1920
     ctagttggga gttctgtcaa ccaatcctcc gcacctccat gtccgatcgt tctagccgag      1980
     cgcagttgag tgtacctgct tcccgtctaa tcaagcgcag tgcttccgca tctcccattc      2040
     cgtccgggaa accacagacc accagcactt tcaagcgcag tccggtcgtt acacggtcca      2100
     gtccgaagcc agcagtatca gtcaatatgt ctctgtccga tttcatcgct gctgcggata      2160
     ggctcataaa attcgaagcc cgcatcgacg gtcccggaga ttctaacgcc actcatgcgg      2220
     ctcagctccg ggccttcgag atccgccgag accgtgtcaa ggcattatgg gatgatgctg      2280
     agcagcagta taaggtctgt gccagagcat tgagccaagg ggcgagcagt ggcgaagttg      2340
     aagccatgga ggccaagttc gacaactgtt actctgtcta cgagcggtgt acgacccatc      2400
     tgggtgtaca gatcgatgca ctttccgtat cgagtacacc gcccgctcct atgtccgctc      2460
     ctttcgcctc gtctggaggc tgtcgtctac cacccgttga tacggaagtg ttccatggcg      2520
     actacttgcg ctggccaaca ttccgtgatc tttttactgc catttatatt cagaatccgc      2580
     gcctaactcc ggtggaaaag ttattccacc tcaactcaaa gacagcaggt gatgcaaatg      2640
     ccttagtcgc cgagtgcccg ctcacgaatg acggctttgc atcagcttgg gacgccttgt      2700
     gtgaccggta cgagaacaag cgactgttag tgaacagcca gcttaagatc cttctcaacc      2760
     tccccaaagt caccaaggaa tcaggcgcgg ctctcagaga attgcatggc aacattcatc      2820
     ggtgtgtcac tgccatcgag caagcccaaa tctctacgga gaactgggat tgtatccttg      2880
     tgttcttgtg cacttccaag ttacctgaac acactcgatc tctctgggag cattctttaa      2940
     cacgaaaatc agacatccca gcctggaaag acgtaagtct cttcattagc gagcatgctc      3000
     gcgcgcttga ggctatggaa ggtgataggt ctctcccgaa agtcccaggt tcagacccga      3060
     aatccacggt cagcaactct cacaaaaaag tccatgcctt cgagtcacaa gtccactcca      3120
     aatccaaaaa gtgcgatttg tgtgctaaag agaaccatcc ggttcgtctg tgtcctcgct      3180
     tcatccaaat gtctttggca gcgcgcgaga catacataaa gcgaaggcaa ctttgcctga      3240
     actgctttgc tcaaggtcac caactgcgcg actgcactag catacacaat tgcgccaagt      3300
     gcaaggggag gcacaataca ctgcttcacc gtgaaggctc cacagcaacc agctcctcgt      3360
     ccggagccgc tgtgactcca ggtacgtccg aagtacctcg taatgtgcag tcgtatttca      3420
     cggccgatac tccaggggtc ctgctgggta cggccgtaat tgatgtatgt cacttggggg      3480
     tcacatatcc agccagggct ttaattgact cggggtccga agcgacgttc atttccgaac      3540
     gattattccg tctgatgaag ctacctttcc gatccgtgca aacgcaggtg tccggtctag      3600
     gccactctgt ggcagcaaaa tcaacgaagc tttgtgactt ccacatcggc actccactga      3660
     aacctcgact tcgaattgag gcctcagcct tggtcatccc acgactctcc ggcaatctgc      3720
     catcgtaccc cattccgcaa cagctcttaa acaatctgcc cgacatccca ttagctgatc      3780
     cactcttctt caagagcgct caaattgacg ttcttttagg cgcggatatc cttccgtcga      3840
     tcgttcaggg gggcttccac cccaacctct gcggatcact aatgggccaa gagacaatct      3900
     ttggctggat tcttacgggt ccagtcacta agaagcctca agagtcgatt tccgctttca      3960
     cgactagggt taccgttctc cacgatgaaa aactcgacca cctcatcact aaattttggg      4020
     aggtggagaa tctccccaag gtagccagtg agccggacwc tgcgtgtgag gataattttg      4080
     tccgaaccac acggagagac aagtctggct cctacgtcgt gactcgcccg ttcaaaaatc      4140
     cggatcaccc tgacttaggt cattcgcgat ccatcgctct ggggcagttt ctcaaaaatg      4200
     agagcaggtt gtccaagaat ccgacactca aggccgaata cgaagctatc ctgcaagagt      4260
     atctcgactt gggtcatatg aggccagtgc accaccacca aagtgagggt ggtgttcaat      4320
     gcatcgtgcc catcttccaa tgggaagagc ctgaatgata ttcttcatcc aggcccggtc      4380
     cttcagtccg acctcacgat gcaaatcctc aaatggcaat actatcgata cgtgttcaat      4440
     gccgacatca ctaaaatgta tcgccaaatt cgtgttgatc caaaacacac ccccttccaa      4500
     cggatccttt tccgtaagcc agacggcaac atcggggact tcgagctaag caccgtcact      4560
     tttggagtaa actgtgctcc cttcctggct ttgagagttc tcaaacagct cgcaaatgac      4620
     gtgagatccc gtttgcctct cgccagcaag gtcatctccg agtgcatgta cgtcgatgac      4680
     gtacttgcag gagcacactc caaagaaaag gtgatcgcaa ccatcgccga actcatagaa      4740
     gctctggaga gtgcggggtt tcccttaagg aagtggacat ccaattccat ggattgtttg      4800
     aaggctatcc caaagagtca tcggctgtgc gaggacttct tagagctaga agattccagc      4860
     acagcaaaga ccctaggcct acgttggcaa gcgcaagccg atcttttcct tttttcgccc      4920
     cctgacattc ctctccagga gtcctacaca aaaaggtcgg tcctttcaca gatcgccaag      4980
     ttgttcgacc ccgcagggtg gctggcaccc tttgtcatcc gtgcaaaaat atttatgcaa      5040
     gcgctctggc tacgcggttt agattgggac caacctctgc ctggtgatct cctcacccaa      5100
     tggcaagagt ttatcctcag cttctccagc cttcgggata ttcgtgtgcc tcgatgggta      5160
     cacttccaac ctcgagccac tatccaattt catgggtttt gtgacgcatc tgagcgtgct      5220
     tacggagcgg ctgtctatct ccgtgtagaa cttggcaacc agatcttcgt caatctgctc      5280
     tccgccaaaa cgagagtcgc tccgatcaaa tccctttcta taccccgctt ggagctttgc      5340
     ggtgctgtcc ttctgaccga cttatgctca gtactgctcc cggcatcccc ggcagtcagt      5400
     tttcagtcct tttactggac cgattcgact attgtcttag cctggctaaa caagcctgct      5460
     tgcaattgga caaccttcgt cgcaaatcgg atcagtaaaa taactgagct caccaatcct      5520
     ggtgactggc atcatgtcag ctcagaacat aatcctgcgg acctagctag caggggagct      5580
     cacccacaag agcttctctc aaatccgcta tggttccatg gcccagattg gcttcgactt      5640
     tcccagtctc actggccact cgttcccgct cttagcttgg agactgctct ggagcaaaaa      5700
     gcagctaaaa gtcatgctgc caccttgact cctccaactg agttcacaag caggttttca      5760
     gaacttcatc gagccctccg tgtcaccgct tggatgtttc gtttcatcaa ccggtgcagg      5820
     agatccgccc cccctccgtc gcaagagctc agtgctgatg aattgcactt tattcagtcc      5880
     aggttcatct ccttgtgcca aaagagagtt tacgcaaagg agatcagttg tttacgtgca      5940
     cagcaacaac ttccggcctc aagtccactc cgcaatctta atcctttcct ggatagtaaa      6000
     ggtatcctga gagcatgcgg acgcataagg acatccgcct ccttaagcta cgacgaacgc      6060
     caccccatca tcctcccttc ctcgtgctct ttcacaaagc tgctggtccg tttcacccat      6120
     cgcatatcct tgcatggcgg gaaccaacta attgtgagac tcatccgttc acaattctgg      6180
     atccctaagc tgaaggtcct catcaaatcg gtgataaact catgcaagtc ctgcgtagtt      6240
     tatcgtaagc gtctccaaac gcaaatgatg ggcgacctgc cagctgatcg cacaaccttc      6300
     accaggccct tcaccgtcgt aggcgtcgac tttgcaggcc ccttcgatgt gaagaattac      6360
     gccggacgtg cctgcctcat tacaaagggg tacgtctgcg tgtttgtgtg ttttagcacc      6420
     aaggctatcc atctcgaggc cacgtccgac ttaaccaccg aaaaattctt agcggcgttc      6480
     tcccgcttgg tggctcggcg tggatgtccg cagaagattt actccgacaa cgggaaaacg      6540
     tttgtcggag ccgcaaagac tttatcgcga gactttgtgg aatcactccg atccgaggtg      6600
     cttgcaaagc actctctcca tagcctatcc tggcatttca atccaccgag cgcaccacac      6660
     atgggcggct tgtgggaatc aggggtgaag agtttcaagg ccctattcta taaatccact      6720
     gccacgacga aatatacttt cgaggagctt tcgaccctct tggcaagaat agaagcctgc      6780
     ctcaactcga gaccgatagc acccatgtcc gaggattcca ccgatctaca agcccttact      6840
     ccaggacact tcctagtcgg tgggcctctt ataaccatta ctgagcccag aattacgcaa      6900
     gatgcgatgt ctatcctgaa tcgctggcag cgacttaagg ctcttcacca acaattttgt      6960
     ttccgttgga aagaagagta tcttaaggag ctgcacaaac gtaataaatg gcaattcgca      7020
     caacgtgact tgaaggtcgg cgacatggtc atcgtgaaag acgacaatgt cgccatcaac      7080
     gagtggcggc tcggccgtgt ccacctcacg cacccaggag atgatgggaa ggtccgagtg      7140
     gcggacattc tcacctcccg gggcatcgtc cgtagacccg tccataagtt ggtcatccta      7200
     ccaacggacg ataatacccc tgtgatgtcc aactaaccct gtatgtgcat ctaattccat      7260
     cacttaccac ccggcacatc tctccttttc agctatgcca tcagctgttc aatccgtgga      7320
     gacacctggc atcaactcct tccgatgccg cgtgtgtaga ggggtccacg ctctgcggaa      7380
     gtgcaggcgt ttcctgggcc ttccggccga aaaacgtctt cgcgcagtac ttatcaacaa      7440
     atactgcgcg aattgtctgg cacaccagca ctccgggcaa tcctgccgca gcaaggccaa      7500
     atgcaagacg tgtggccaga gccatcacac tctgctgcat ctgcccggag ctcgtcgccg      7560
     acagcgacgt cgtcccgctg cagcccctat cagcgggccc acctcctccg ccctcgccgg      7620
     gacacctacg ccacaaaagg gatcccgcaa aggacgacgc caccaggcag catccaggtc      7680
     cacgagggaa gttacgccgc cgctgagcac gctgatgcag cacaaggccg ttagcatcct      7740
     gcccacggca attatcatct tgcaaacggg tgttaaggat ttcgatgtga gggcgttgat      7800
     cgatccgtgt agccctacta ctcggatcca tgcttcattg gcaagggcca tgggtctttc      7860
     cgccactagc gtgggtccgg gagaggtttg cacagcgacc atctgttcga aaacatctga      7920
     tttcaatatt gatgctatcc tgcaattaga cccgcagctc aattgccgga cgccaattcg      7980
     gccgatcgag cacgcagcca atccggctgg gattacgctc gccgacggca attgggctca      8040
     acccagtacg gtgtctgttg tgctgggggc tgacgtgtat cctcacgtca tccttccagg      8100
     aatcgtcccc agcactgacg gtcgtcccat ggcccagaac accgtcttcg ggtgggtcct      8160
     ttcaggttcc tgcctgtaac cctacaccgg tatatattgc aatccttgca agggggggag      8220
     ta                                                                     8222
//
ID   BEL-10_DMo-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-268
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2954-2954 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 268 BP; 71 A; 77 C; 34 G; 86 T; 0 other;
     tgttaatgcc agatcccatt aacaggattg ctcctccccc acagagcccg attatgctat        60
     taacagcttt ctgttaatag cataaccgct tgctctcagt acttggccct ccgccaagta       120
     ctactccttc tactattact accttttttt acactgattc cttgtgcaac tacttgaata       180
     tccaacatcg ccattttgcg cgtgtcgaat aaaatagttt ttaaaatcac cactacgtgt       240
     ccttatttca agactccaca ctacaaca                                          268
//
ID   BEL-10_DSer-I repbase;    DNA;    INV; 5629 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5629
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2019-2019 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           380..5626
FT                 /product="BEL-10_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAENDSVTACPSGANSDFDFYKAKADSVFRQLVALND
FT                 FFGSEEASHFDEADLQVRLELIEKMQDNFDKSQTAVERLNLLELASDVRAK
FT                 FLNIYCAVKSKISRELAKLRRVSVINSTALPNFNIEQASTSRAGVRATRLP
FT                 EFKLPRFGGAYMDWPDFYAMYTTVIGNNEDLTNLEKFQHLRSCLDGPALDT
FT                 IRSLEPTEANYEKAVDLLTARFDNKLLHFQGHIRSIFRLSSVVKGSARSLR
FT                 QLSDGINSHLRALNTMATTQEIADGMLISLVSSKLDQHTQEKWEEGLPTNK
FT                 LLKWTDMAAFLEKRCRMMENIENAMVTHTPSNQVGKTINKNVQNACTASSY
FT                 TSLCILCDSKDHFISKCPQFIALSPTLRYKEAKRLHLCLNCLRKGHSLQQC
FT                 KAGNCRHCRSKHHTLLHLESNPASSPSQPTSTSAPQNSASLISASPNSPPP
FT                 KASVDHQSDYVLLATAIIYVRNRSGIMVPCRALLDSASQINFITSRLAHQL
FT                 QLSTRRSNTCISGIGESSLMADKAVDIIVQSRNKGYRTSFAAIMTSTITNY
FT                 QPHFDLNSSEWNIPSNLFLADPLFHKSQRIDILIGAGIFFDLLCVGQIRLA
FT                 DHLPSLQKTRLGWVVSGGISSPAHKHSSLPALSVEHDVQLEPESLPDLVKR
FT                 FWEIDSYCGSSSAPTDEDALCENLFAQSYSRLESGQYSVRLPAKTSLDMLG
FT                 DSYHRASQRFKSLESKLARNPNLKAQYIAFIKEYIDLGHMSLSCKQSALPQ
FT                 YYLPHHCVHKLDSSTTKLRVVFDGSAKSSSGYSLNELLFAGPSIQPKIFST
FT                 LVRFRFFKVALCGDICKMYRCVRVSEPDNLLQCILWRDSPSEEIKIYTLDT
FT                 VTYGTKPAAFLAIRAMQQLSYDEEKDFPVAAKIVRRDFYVDDLISGGDSIE
FT                 EVVYIRQQVKSLLAKGLFPIRKWCSNEPAALEGELEADREKMLKFSDGTDV
FT                 AKTLGLYWDTSSDNLLFGFSGNVADKPATKRSILSAVAKFYDPLGLIAPII
FT                 TRLKIFLQILWKDKLDWDETLPQSLHSLWLEHSAQISAVSHLKFPRFIMQS
FT                 DSSLEIHGFCDASLAAYGACIYVRSEAGGTYSSHLLCSKSRVSPLKTITIP
FT                 KLELCAALLLSELIHNIANAISQPCTYHCWSDSTIVLSWIRQAPSDFNIFV
FT                 SNRIAQIQERTKDMAWHHISTHYNPADILSRGCTPLELLDSTLWREGPPFL
FT                 RTDEACWPPHTPTLVDVPERRRLALVLTQSQDISYGCKFQNCFGKLQRVFG
FT                 YIHRFLMLKAKDEPRRRGPLTVDDIKGGTHLLIKGIQLINFAEEYKALQSE
FT                 RQISSKSKLYSLHPICDESGLIRVGGRLQNSLLDYDAKHPILLPKDHPVTS
FT                 AIIAHYHLKFLHSGPQSLLAALRQRFWPIGGRKIVAATINKCIRCFRLKPK
FT                 LAEHIMAPLPSNRVQPSRPFVTVGIDFCGPFYSKSEVRNRPPVKCYIAIFV
FT                 CFATKACHLELVEDLSAASFIAALKRFISLRGKPGTIWSDNATNFVGAKNE
FT                 LLELRQLFLADPQNSDLQQAFVSIGIKWQFIPPRSPHFGGLWEAAVKSAKY
FT                 HFHRVVGNTILSFNELRTLVYEISAMLNSRPLCPISENPNDLDVLTPGHFL
FT                 IGSSFATIEEPDITHLSIDRLSRWQRVCQIQQIIWRKWSTSYLSLLQERGK
FT                 WRASRPNILPHSIVVLKEDNIPPLQWRLGRVESIIHGADGVARVAVIRTAT
FT                 GLIKRAVGKIAVLPLETTSSGSVPHPAGG"
XX
SQ   Sequence 5629 BP; 1447 A; 1412 C; 1234 G; 1536 T; 0 other;
     tttggtgacc ccgacgtgat cgcgtaaaaa atcgttttcg ttaaaataaa aggtgaaaag        60
     tgctttatat aatagttcgt atgctcacac aatacaattg catatcgttg catcgctatt       120
     gaactttatc ggtacattcg agtacatagc atctctttat atatttgtgc actagcatat       180
     agttgcagcc cttttatata cttttcgtgc aaattgtgtt tgtgctgttg gttttggtgg       240
     tccgatagaa ccgttagctc gcggtcagtg aacgccaagc ttggctccgc tattctttcg       300
     ttctctattc tctgcgtttg gtacagctgc atcggtcgca agcccaaggt gacatttgaa       360
     tactcttttt gaaaataaaa tggcagagaa tgattcggtt actgcgtgcc catccggggc       420
     caatagtgat tttgactttt ataaagccaa agcggactcg gtttttcgac agctagtggc       480
     tttaaatgac tttttcggtt cagaagaggc gtctcatttt gatgaggccg accttcaagt       540
     caggcttgag cttattgaaa aaatgcaaga taattttgat aagtctcaaa cagctgtcga       600
     aaggctcaat ctactagagc tggctagtga tgtgcgtgca aaatttctaa acatttattg       660
     tgcggtgaaa tccaaaatat ctcgcgaact agcaaaactc cgccgagtgt cagtgataaa       720
     ttcgactgca ctcccaaatt tcaacatcga gcaggcttca acctccaggg ctggtgtccg       780
     ggccactagg ctgcctgagt ttaagctgcc acgatttgga ggcgcttata tggactggcc       840
     agatttctac gctatgtaca ctacagtcat cggcaacaac gaggacctga ccaatttgga       900
     aaaattccag catctacgct cctgtttgga tggccccgcg ttagacacaa ttcgctcgct       960
     ggagccaaca gaggccaatt atgagaaggc agtcgaccta ttgactgcta ggtttgataa      1020
     caaacttttg cattttcagg ggcacatacg atctattttc aggctttcta gtgtggtgaa      1080
     agggtcggca aggagtttgc ggcaattgag cgacggcatc aactctcatc tgcgagccct      1140
     taacacaatg gcaaccaccc aggagattgc ggatggaatg ctcatatccc tggtgtcctc      1200
     caaactggat cagcataccc aggagaagtg ggaagaggga ttgcctacca ataagctgct      1260
     aaaatggacg gatatggctg cctttttgga gaagagatgt cggatgatgg aaaacattga      1320
     aaatgctatg gtaacccaca cacctagcaa ccaggtggga aaaactataa ataaaaatgt      1380
     ccaaaacgct tgcaccgcat catcctacac ctcattatgt attttgtgtg attctaagga      1440
     tcactttatt tcgaaatgtc cacaatttat tgccttgagt cccacattac gctacaaaga      1500
     agcaaaaagg ctacatcttt gcctaaattg cctgcgtaaa ggccacagcc tgcagcagtg      1560
     caaagctggg aactgcaggc attgtcgctc taagcatcat acattgctac atttggagtc      1620
     aaatcctgct tcatcaccct cgcagcccac atccacttct gctcctcaaa atagtgcctc      1680
     gctcatttct gcttcgccaa attcaccccc acctaaagcc tcggtagatc atcaatctga      1740
     ttatgtgctt cttgccactg ccatcatata tgtccgaaat cgttccggca taatggtgcc      1800
     ctgcagagcc ttgctcgact ctgcatcgca aattaatttc attacttctc gactcgctca      1860
     tcaattgcaa ctgtcaactc gtcgctcaaa tacatgcatc tcaggtatag gagagtcttc      1920
     actcatggct gataaggcgg tagatattat tgtacaatct cgcaacaaag gttaccgaac      1980
     atcattcgct gcaataatga ctagcaccat cacaaattat cagccgcatt tcgacctaaa      2040
     ctcttccgaa tggaacatcc ccagcaattt attcctcgcc gatccgctct ttcataaaag      2100
     tcaaaggatt gacattctta taggagctgg aatcttcttc gacctgcttt gcgttgggca      2160
     gatacggctg gccgatcacc ttccctcctt gcaaaaaact agattgggtt gggtagtatc      2220
     cggtggcata tcttcgccgg cccataaaca ctcttctctt cccgcattgt cagttgagca      2280
     cgatgtacaa ttggaacctg aatcgttgcc ggaccttgtc aaacggtttt gggaaattga      2340
     cagctattgt ggatcgtcat ctgctccaac tgatgaggat gccttgtgcg agaatttatt      2400
     tgctcaatct tattctcggc ttgagtcagg ccaatattca gttcgattgc ccgcaaagac      2460
     tagtctcgat atgctaggag attcatacca tcgtgcttcg cagcgattca aatcattgga      2520
     atccaaattg gctagaaatc ctaatctcaa ggctcaatat attgccttta taaaggagta      2580
     tatcgattta ggccatatgt cgctctcttg caagcagtca gctttgccgc aatattattt      2640
     gccccaccac tgcgttcaca aattggacag ctcgactacc aagctcaggg tagtcttcga      2700
     tggttctgcc aagtcttcgt ctggatactc tttaaacgag ttgctctttg ctggtccctc      2760
     cattcagcct aaaatcttca gcactttggt tcggttcaga ttctttaaag tggcactatg      2820
     cggcgacatc tgcaaaatgt atcgctgtgt gcgtgtctcc gaacctgata atctgctcca      2880
     atgcatcctc tggcgtgata gtccaagcga agaaattaaa atatacaccc tggacaccgt      2940
     cacttatggc actaagcctg ctgcattcct agcaattcgt gctatgcagc agctctccta      3000
     tgatgaggag aaggattttc ctgtggcagc caagatcgtg cgtagggact tttatgttga      3060
     cgaccttatt tctggaggcg actcgatcga agaggtcgtt tatatccggc agcaggttaa      3120
     atcgttactt gcaaaaggcc tatttccaat tcgtaaatgg tgctccaatg agccggcagc      3180
     gcttgaagga gaacttgagg ctgatcgcga gaaaatgctc aaattcagtg atgggactga      3240
     cgtcgccaaa acacttggcc tatactggga tacaagttcc gataatttgc tttttggatt      3300
     ctctggaaat gtagcagaca agccagctac caagcggtct attttatcag ccgtagccaa      3360
     attctacgat cccctaggtc ttatagcgcc cattataacc aggctcaaaa tattcctgca      3420
     aatcctgtgg aaagataagc tcgactggga tgagactttg ccacaatctt tgcattcctt      3480
     atggttggaa cactccgcgc aaatctcggc agtcagccat ttaaaatttc ctcgcttcat      3540
     catgcaatct gactcatctt tggaaattca tggattttgt gatgcaagct tggcggcata      3600
     tggtgcctgt atttatgtgc gctccgaagc agggggcacc tactcatcac atttgctttg      3660
     ctccaagtct agagtctcgc cgcttaaaac aataaccata cccaaacttg aattatgcgc      3720
     agctctattg ctatccgaac tcatccacaa catcgctaat gccatttctc agccttgcac      3780
     atatcattgt tggtctgact caacaattgt gctctcttgg attcgccagg ccccatcaga      3840
     ctttaacatt tttgtctcca acagaatcgc gcagattcaa gaaaggacca aggatatggc      3900
     ttggcatcat atatcgaccc actacaaccc ggctgacata ttatccagag gatgtactcc      3960
     gctcgaactt ttggattcga cgctgtggcg tgagggccca ccattcctgc ggacagacga      4020
     agcttgctgg ccgcctcata cgcctactct agtagatgtg cctgaacgcc gccgcctcgc      4080
     gctggtgctg acgcaaagcc aggatatttc gtatggctgc aagtttcaaa attgttttgg      4140
     aaagctgcag cgagtctttg gctacataca tcggttccta atgctaaaag ccaaggatga      4200
     gccacgacgg cgaggacctc ttacagtaga cgacatcaag ggaggcacgc atctgctcat      4260
     caagggaatc cagctcatca actttgctga ggagtataag gccctgcaat ccgaaaggca      4320
     gatttcctca aaaagcaagc tgtactcgct gcatccaatc tgcgatgaat cgggacttat      4380
     tcgagttggc ggtcggctgc agaattcatt attggattat gatgcaaaac acccaatttt      4440
     gcttcccaag gatcatccag tcacgtcagc aatcatagct cactatcatt tgaaatttct      4500
     tcactcaggc ccgcagagct tattggcggc cttacggcaa aggttttggc caattggtgg      4560
     tcgaaaaata gtcgccgcca ctatcaacaa atgcattcgc tgctttcgat taaagcccaa      4620
     attagctgag cacatcatgg cccccttgcc atccaaccgc gtgcagccaa gtcgaccatt      4680
     tgtcacagtg ggaatcgatt tctgtggtcc tttctactcc aagtctgaag tcagaaaccg      4740
     gccacccgtc aaatgctata tcgcaatatt tgtttgcttc gccactaaag cctgccattt      4800
     ggagctggtg gaggatttgt ctgcggcttc attcatcgct gccctcaagc gcttcataag      4860
     cctaaggggc aagcctggca caatatggtc cgataacgct acaaacttcg ttggagccaa      4920
     aaacgagctg ctggaactga ggcaactgtt tctcgccgac cctcaaaaca gcgatcttca      4980
     gcaggccttc gtttccatcg ggatcaaatg gcaatttatt ccccctcgtt cgcctcattt      5040
     cggcggccta tgggaggctg ccgtcaaatc tgcaaaatat cattttcatc gggtcgttgg      5100
     caacactatt ctctcattca atgagcttcg cactttagtt tatgaaattt cagcgatgct      5160
     taactctcga ccgctctgtc caatttcaga aaaccctaac gatttggatg tccttacacc      5220
     tggtcacttt ttgattgggt cttctttcgc cacaatcgag gagcccgaca tcacgcacct      5280
     cagcatcgat cggctgagcc gctggcaacg agtttgccaa attcagcaaa tcatctggcg      5340
     gaagtggagt accagctacc tctcgctttt acaagagcgt gggaaatggc gtgcatcaag      5400
     gcccaacatc ctaccgcata gcattgtggt gctcaaggag gacaacatcc ctccgcttca      5460
     atggcgtctt ggcagagtgg agagcattat ccatggagct gacggtgtgg cccgtgtcgc      5520
     tgtcattcgg acagccactg gcctaataaa aagggctgtt ggcaaaatag ctgttctacc      5580
     cctggaaacc acctcatctg gcagcgtgcc gcatccagcg gggggagca                  5629
//
ID   BEL-10_DSer-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-322
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2016-2016 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 322 BP; 112 A; 81 C; 44 G; 84 T; 1 other;
     tgtcgggagc agaagcagca gatttaatat taaatgtttt aaatcattat ttgtaaacaa        60
     gcgatcagct gcggcagaag ctttccacct cataagccgg catgaaagct cttccgccgc       120
     agctcttctg tttggtttat ctattctctc gwttcattcg ctcacttacg ttgaaactaa       180
     aaacacacaa aaactttgta accaaaccac acacaagcac acacaaatta aaacataact       240
     aattttacgc caacacaaaa caaacccctc gctaaatcaa ttcgcttaat aggtggcata       300
     aattaatgcc ctcctcaaaa ca                                                322
//
ID   BEL-10_DTa-I repbase;    DNA;    INV; 5774 BP.
XX
AC   AFFI01004542;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DTa_;
KW   BEL-10_DTa-LTR; BEL-10_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5774
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01004542; Positions   45903   51676.
XX
CC   Positions [4809-5390] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2343..5741
FT                 /product="BEL-10_DTa-I_1p"
FT                 /translation="MHTHSCAKGKRSRSQRQLAALLGNRRTEHRTSSTHRG
FT                 RRSLRKPLQFSCDSSCLRTRSGMFTIQALPDALGTSMETAKSRFLQLEKRL
FT                 ERNPLLRDMYSQFMSEYLSLNHMQIRDHVDLTQPHYFIPHHGVLRPDSSTT
FT                 KLRVVFDASATTSSNMSLNDIVMVGPTIQQTLLLTLLSFRIHRHALSADIS
FT                 KMYRQFMVHPDDRKFQLIFWRSSSEQPLKIYQLNTVTYGMACAPFLAIRSL
FT                 QFIAQRKQEQYPVGASVLLEDMYVDDLLTGADSIEELQQKVFEVNTILEDA
FT                 GLALAKWNASHLIETNTEFHIKPNGDNVTKALGMSWKPLSDVFCFRYALPS
FT                 GGEITKRRVISILARLYDLLGLLSPVVVRCKIFAQQLWLQGFGWDDTLPSN
FT                 LKVDWHRIESDLQNVNQVEIPRFVNSSPHQLGQIHGFSDASEHAYGCCIYL
FT                 RTKIDGKFISRLIISKSKVAPTKALSLPRLELCGASLLCNVWHKIKHKFTN
FT                 LINSTIFWTDSQIVLHWINLHSSQLKCFIANRVSRIQEQSVDVTWRHVPGK
FT                 SNPADIVSRGCAASELSDTIWFSGPEFLRLDPEFWPQSPPDCEFDDLYLEK
FT                 RKAVSFACSSIQSTDDKPKIADDPHLGSVMLEIVNRTGSYRRILRIVAYVL
FT                 RVFNRVPANRKFSVQDAMAIAPTELNQAFTHIVAAIQNASFSKEISQLAKN
FT                 QEIKDKTIRGFSPYLSQVEVGTYTLTVLRVGGRLTRAPIPIDARYPMLLPK
FT                 DHDFTWKFVNHLHRTNMHAGAKALVGLLRLHIWVANAKKLASSVVRQCVHC
FT                 YHYKPRLANQIMGSLPSDRLQTVRPFTVTGVDLCGPFLTSYRIRSKVPYKT
FT                 YLAIYVCFSSKAVHIELLSDLSTNTFILSLKRFVSRRGSPCRIYCDNATNF
FT                 TGASVQLNRFKQELFSQQTKQDLETFSNDTGVEFCFIPPRAPHFGGLWEAA
FT                 VKSMKNLLIKCMSDSGMTYEELQTIAIEAEAILNSRPIAGHSEDPNDGEAL
FT                 TPGHLLTGSSLKALPEPAVDDSKLSYLTRFQRIAYTKRRLWDLWRRDYLHT
FT                 LQMRAKWTSPIANLEPGQIVLIHEDNSPPQHWLTGRIINSISGEDNKVRVV
FT                 NVQTAKGVIRRPICKIAPLPIQYGS"
XX
SQ   Sequence 5774 BP; 1648 A; 1507 C; 1226 G; 1393 T; 0 other;
     ttttggcgac cgtgacagga ctcacgttct gtatcaagtt caatttcaag ttcaattcgc        60
     atacttcggc gaactcgttt ggaaaaggtc aaccgtagat ttgatcagtc ggatcaacac       120
     acagcgtttg tggcgagata tcgttcgcgc atctactacc cggtacctaa ttcgtgacat       180
     ttcttcgtga caatataatc gtcatcgccg aaagtaatca aatcatagtg ccaccaattt       240
     cgtgttcctc ctcgcaccat ttcgatctgt ccgagcggca gaatcattaa ccaaaaggaa       300
     ctaaaattgg agcatcgtcg catcgattac ataaccacag ttatgtaacc gtctcataac       360
     ccacacattc gtagtggaac ctaatcattt ggttctctct ttgatctaca ttcttcttct       420
     ggcaacactg ttcactggaa agcggaattc caagtactga cttatcgata cttccaacaa       480
     acggtcacac tcagcaaggg cttttggaaa cacatcacta gtggaaagcg gtacttggaa       540
     aataattacg acgcaataag atggccaagc cggaagaacg tttagctact cttttacaag       600
     gaaagagcag cctacttctg gccatgaaga acctcaagaa ccatgtggaa gctgataatc       660
     ggatgactgc cgcagaattg gattgccgag cgcaggtgct agacgctcat ttcaggcaag       720
     cgtctcaaat tcaatccaac attgagcgtc tagacccaga aacaaagaga gagagatcct       780
     cgatgagttt ttcatctcaa ccaaggcagc catcctcagc agctcctcca aacttaaacg       840
     cgaaagaata gacgacacca gttttctaaa ttctacttct tcccagtcac atcacactcg       900
     attgccttca ttaaaattgc ccaaattcga tggaaaatac agcgagtaca gccgatttat       960
     gactgcattt acgcacttgg tggacgatga cgtcacaatt aacccagtcg acaagttcaa      1020
     ttatctcctt agttgcttgt ccgacaccgc cttgagtgtt gtgtcgtctt ttcaagtttc      1080
     ggaagacaat tatcccaaag ccatgaatcg cctcaaggag cgatacgaca agaaggtact      1140
     catctttctg gagcacatat ctagcttgtg cgccctaccc atcatggaac ccgcagacgc      1200
     aaattcactg cgtggtatct tggacaccgt ttctgcactg cgcgggtcat tgctatcact      1260
     cggctcagaa actgatattc tcaacgcaat tctaatccac aacgttctcc tgaaggtgga      1320
     ttcagatgct cgccaggcct acaatcgatc tcaagattat gacacgttgc catccttggg      1380
     acaactgtta taaaacgcta agccgacaca gcgaattcct ggactgcagc gcgccctgca      1440
     tcaataagga gcggctgcta gagaagcgcc aggagaaacc aaccgacaaa cgccacggca      1500
     acctacgtaa ggcatttgtc gccgcccaga acacctgtct aaaatgcaaa tcaacggatc      1560
     acaacatcgg taaatgtcca tcatttgctg cactcaccgt ggatgagcgg ttcaacatcg      1620
     caaagcaact atccttgtgc ataaattgcc tcggaaaggg gcacatggca ggcaagtgca      1680
     gttccaaatt taaatgccgc gtatgccgcg gactgcacca cacttgtttg caccgataca      1740
     cacaggtcat cacagcatca cagccaatgg atgacatttc tcaagcggat cactgcacaa      1800
     cgcacgcagt atcccttcta gccagacagt ccaaacgtgc tctcattcca actgcagtga      1860
     ttcttatcaa agacaattgt gggtcctatc aacacgcacg agctctcctc gactccggat      1920
     cggagatcaa cttcatcacc gaagaattgg caaagcggct ccaactgacc cgtgttcggc      1980
     aacaatatga catctgtggc attgcagatg cacgtgcaaa aatgaaattc tcagtcacca      2040
     catcagtaaa gtcaagaatc ggacacgggg aatggttgct cgaattcgcc ataaccaaat      2100
     ccatcactca aagccagccg gaaagcattg tcgaaaccaa cggatggaag cttccggtcg      2160
     gaatcgaact ggccgatcct tcttctacaa accaagcaag atcgacattt taatcagcat      2220
     ccaggaattc tttggtcttt tgggagacgg aaaaatctct ctgggtccaa atctacccta      2280
     tctgcaaaag tcctcacttg ggtggctgct tggcggcaga attgacgagc ctagaagtgt      2340
     aaatgcacac gcattcatgt gcaaaaggaa agcgttcgcg atctcaacgt caacttgcag      2400
     cgcttttggg aaatagaaga actgagcaca gaacgtcaag cactcacaga ggaagaagaa      2460
     gcctgcgaaa accacttcaa ttctcatgtg acagttcttg cctccggacg cgttcaggta      2520
     tgtttaccat tcaagcactc cctgacgctc tgggcacatc aatggagaca gccaaatctc      2580
     gatttttaca actggagaag cgcctagagc gcaacccttt gctacgggat atgtacagcc      2640
     aattcatgag cgaatatctc tcgctcaatc acatgcagat tagagatcat gttgatctca      2700
     cccagccaca ctactttatt ccccaccatg gagttctacg cccggacagc tccaccacga      2760
     agctacgtgt agtattcgac gcgtcagcta caacatcgag caacatgtcg ctcaatgata      2820
     ttgttatggt cggcccaacc atccaacaga cgctcttact aacactcctc tcatttcgca      2880
     ttcacagaca cgctctcagt gcagacatct ctaaaatgta ccgacaattt atggtacacc      2940
     ccgacgatcg caagtttcaa cttatatttt ggaggtcttc aagtgagcag ccgctgaaaa      3000
     tctatcagct caatacggtg acctatggaa tggcatgcgc accattctta gcaatacgga      3060
     gtcttcagtt catcgcccaa cgaaaacagg agcagtatcc tgttggcgcc tccgtactcc      3120
     tcgaagacat gtacgtcgac gatctgctga caggggcaga ttccatcgaa gagctgcagc      3180
     agaaggtctt cgaagttaac acgattctcg aagacgcagg gttggcactt gcaaaatgga      3240
     acgcaagtca tctcattgaa acaaatacgg agtttcatat caagcctaac ggagacaatg      3300
     tgacgaaggc cctcggcatg tcttggaagc ccctatcgga cgtattttgt tttcgatatg      3360
     cgttgccatc gggcggagag attaccaaac gacgcgtaat ttcaatcctg gctcgtctct      3420
     acgacttact tggcttgctc agcccagtgg tcgttcgctg taaaatcttc gctcaacaac      3480
     tctggctgca aggatttgga tgggacgaca ctctcccatc taacctcaag gtggactggc      3540
     atcgaattga gtcggatctc cagaacgtca accaagtcga aatacctcga tttgtaaatt      3600
     cgtcaccaca tcagctagga caaatccatg ggttctcaga tgcatcagag catgcatatg      3660
     gctgttgcat ttatttgcgc acaaaaatcg acggcaagtt tatatcacgc ttgataattt      3720
     caaagtcaaa ggtagcgcca accaaggcac tctcgctacc gagattggag ttatgtggag      3780
     caagtctgct ctgcaacgta tggcacaaaa ttaagcacaa gttcacaaac ttaatcaatt      3840
     cgacaatctt ttggactgat tcgcaaattg tgcttcattg gataaatcta cattcatcac      3900
     agctcaaatg ctttattgcc aatagagtat ccagaattca agaacaatcg gttgatgtaa      3960
     cttggcgaca tgtaccagga aagagcaacc cagcagacat cgtctcacgc ggatgcgcag      4020
     cttcggaatt atcggacaca atttggttct ctggccctga attcctcaga ttagatccgg      4080
     agttctggcc acaatcacct ccagattgtg aatttgatga tctctacttg gagaagcgga      4140
     aggcagtctc attcgcatgc agcagcattc aatctacaga tgacaaacca aagatagcgg      4200
     atgatccaca tctcggaagc gtcatgctag aaattgtcaa tcgcactggg tcctatcgac      4260
     gtattctcag aatagtagcg tacgtccttc gtgtattcaa cagagttcca gccaacagga      4320
     aattctcagt tcaagacgca atggccatcg cacccacaga actaaatcag gcattcacac      4380
     acatcgttgc tgcaattcaa aatgcttcgt tctcaaagga aatctcacag cttgccaaaa      4440
     atcaggaaat caaggacaaa acaattcgag gattctcgcc ttacttgtca caggtagaag      4500
     taggaaccta cacactcacc gttctacgag taggaggtcg actaactaga gccccaattc      4560
     ctatcgacgc gagatatcct atgctcctcc caaaggacca tgatttcacc tggaagtttg      4620
     tcaatcactt gcataggact aacatgcatg ctggagccaa agcgcttgtg ggactacttc      4680
     gtctacacat ttgggtggct aacgccaaaa aactagcatc atctgtagtc aggcagtgcg      4740
     tccactgcta ccattacaag cccagacttg cgaaccaaat catgggttcg cttccttctg      4800
     accgactgca gaccgtcaga ccattcactg taactggagt agatctgtgt ggaccgttct      4860
     taacatccta tcgcatacgc agcaaggtgc catataagac ttatttggcg atctatgttt      4920
     gcttctcatc aaaggcggtc cacatagagc tgctctcaga cctttcaact aatacattta      4980
     ttctttcgtt gaagcgcttt gtttctcgtc ggggcagtcc ctgtcgcata tattgtgata      5040
     acgcgacaaa tttcactgga gccagcgtcc aactcaaccg cttcaagcaa gaactcttta      5100
     gtcagcaaac taagcaggat ctggaaacct tcagcaacga cactggagtt gaattctgct      5160
     ttattccgcc aagagctcca catttcggtg gactctggga ggcggcggtt aaatctatga      5220
     agaacctact tatcaaatgt atgtcggaca gcgggatgac atacgaggaa ctgcagacga      5280
     tcgctataga ggccgaagcc atcctaaatt ctcggccaat tgctggtcat tcagaggatc      5340
     ccaatgacgg ggaagctctc acccctggtc acctcctcac tggttcgtcc ctcaaggcac      5400
     tcccggaacc agcagtggat gacagcaagt tatcgtatct aacacgattc caacgcatag      5460
     catacacaaa aagacgcctc tgggacctat ggcggcggga ttacctgcac acgcttcaga      5520
     tgcgagcaaa atggacttct ccaattgcaa acctcgaacc tggtcagatt gttctcatac      5580
     atgaggacaa tagccctccc cagcactggc taactggacg cattatcaac tcgatcagtg      5640
     gagaggacaa caaagttcgt gtggtcaatg ttcaaacggc caaaggagtt atacgacgac      5700
     caatctgcaa gatcgcacct ctgccgatcc aatatggttc ttgaaaggtt gtacaccttt      5760
     caacgggcgg agta                                                        5774
//
ID   BEL-10_DTa-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   AFFI01004542;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DTa_;
KW   BEL-10_DTa-I; BEL-10_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-303
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01004542; Positions   45600   45902.
XX
SQ   Sequence 303 BP; 87 A; 63 C; 47 G; 106 T; 0 other;
     tgtttggacc ttgtattata ttcgagttta atgaatttta ttgtatgaaa ttatttcttt        60
     gcttggaacc tattcctata ctatttactc taccaacatt cttgttaaca ttacctattc       120
     gcaacatgta cctattgtaa acattaccga ttcgcaacat gtatatctta atttgtagaa       180
     tttggagacc ttaaccttcg gcccgaagtt aagggcttcc cgatcaataa acgacttgaa       240
     atcagaccag caaactaact gcacgcgttt tggtttcacc ctagattcgc tagggaacgt       300
     aca                                                                     303
//
ID   BEL-10_DWil-I repbase;    DNA;    INV; 8838 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DWil_;
KW   BEL-10_DWil-LTR; BEL-10_DWil-I.
XX
NM   BEL-10_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-8838
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2308..7788
FT                 /product="BEL-10_DWil-I_1p"
FT                 /translation="MSTSPSKDEKAAENTAAPSKSSIAAPGQRQRSTSPTT
FT                 PPSRAFQTLSSPLTLKSAPSSTTFQQATSEPRRASQKEVKSLVPLPQILVT
FT                 APRVTRSETKRVLAASTMALKKFGSICDKLSQFEVDNHVTSLSEVSVFTLQ
FT                 VRRDRVQALWEKVEQEYEKCEALIDGKDDNSEDLAIQAKYDKCYQVYERCT
FT                 ARLNELIHERSAPTPPNRHAPTSAPAERGCRLPPIDTEVFTGDYLKWPTFR
FT                 DLFTAIYISDSRISPVEKLYHLLAKTRGEANLIVAKFPLTNDGFETAWNAL
FT                 KQRFENKRLIVNSQFRALLDLPQISHESGKALQDHQNALQASIRAFEHCGL
FT                 PVTTWGGMFVFFCSIKLPKNTLSLWEQSLGDKTAIPEWQMMDDFLTERFRT
FT                 LEAVENTTAMAISVPTSKPPRNPIPATRKANTFEAKVTTKPKSCDLCMKEN
FT                 HPVRRCPRFLQMTVPERVAYIKKKSLCLNCFARGHQVKDCPSQHNCFTCKG
FT                 RHNTLLHKDARPENNPTSVPAQPSSHNIVRTYFTSEARSSRDKLLGTAIVD
FT                 FWHKGTTYASRALLDPASEANFISERMFRLMKLPFQTVRAEVTGINGKVNR
FT                 TLKVCHISIRSSHGPPVQIEIEAFVLSQVADDLPSCTIAQATLEGMPNIPL
FT                 ADPSFRLKAKIDLLLGIDVIPAVTLSGIQTEVCGSLMAQETRFGWVISGPL
FT                 QGVPVSSCAAFTTRVAVSREEGLETLLTRFWEVEDLPGKPVEDSDSVCEVN
FT                 FQKTTRRDVAGRYTVSLPFRDPTNINLGHSRPGALAQFLKNESRLLKNIPA
FT                 KTEYDAVIQEYLDLGHMRQVPFDGTNNNFYLPHHAVFKPDSTTTKVRVVFN
FT                 ASSKSTNGVSLNDILYPGPVLQSDLTTQILKWRFFRVVFNADITKMYRQIM
FT                 VDPIHTPFQRILFRNKEGQLGDYELNTVTFGINCAPFLAIRVLQQLASDVQ
FT                 SKFPLASDIIKSYMYVDDVLAGAHNETTAIAMVNELQDALGSAGFPLRKWT
FT                 SNVKSVLSCIPKSHLLNADFLDIEEASTAKTLGIRWKATTDEFYFVISPQD
FT                 VKSAYTKREVLGQIAKLFDPAGWLAPFVIQAKVFMQELWLQELGWDDQLPS
FT                 ELHHRWQDFTKSYSFLDQIRIPRWVLHDPNSDIQFHCFCDASQRAYGAAIY
FT                 VRVSNDQGISCCLLAAKSRVAPVKTVSLPRLELCGATLLAELAAAVLPQLP
FT                 VDNAEAFYWSDSTVVLSWLNKPPCTWTTFVANRVAKIVTATNDAPWNHVRS
FT                 EDNPADLPSRGLSAQELVHKDLWWHGPPWLREPQESWQRATPLPLDTALEK
FT                 RVVKVHVAIAKPANEILSRFSNLARALRVIAYVIRFGRRCRKLPNDYSGEV
FT                 TSSEINQVLQALIRVTQRDYFPTEHRCLQQKKSLPTSSTILNLNPFIDASG
FT                 VIRACGRVQQAAALSYDERNPILLPVVSPLSRLLVLFTHQISLHGGSQLVV
FT                 RLIRQRYWIPRLRNLVKSVVNSCKVCVIYKRRLQSQLMGTLPAQRTTFARP
FT                 FTTTGIDFAGPFDIKSFTGRACRISKGYVCVFVCFSTKAIHLEATSDLSTE
FT                 AFLAAFARFVSRRGCPQQVQSDNGKNFVGASRVLEKDFLNSTQQKILSHYS
FT                 HQNLSWHFIPPGAPHMGGLWEAGVKSFKTLFYKATSNQRYTFEEFSTLLAK
FT                 VEACLNSRPISPMSEDPTDSLALTPGHFLVGGPLLSVTEPEIKDQVPSIIN
FT                 RWQRLKAVSQHFCTRWKDEYLKELHKRNKWRFPSKNLEVGDLVVLKDDNLP
FT                 FNEWRLGRIHQTHPGSDGNVRVVELLTARGIVKRPVAKLIFLPPEERIQTH
FT                 YVKLQ"
FT   CDS           7935..8798
FT                 /product="BEL-10_DWil-I_2p"
FT                 /translation="MAPRPRSVQASKEERRCSRGTESFRCRVCRGIHPLKR
FT                 CRRFLRLNVEKRMRAVLANKYCANCLAHQHSGGSCLSGDKCRICEEDHHTL
FT                 LHFHEQPRRRTPSSVVRRVTPESSRRRVAPTPASDPKLTLTTLLQHRNPHL
FT                 MPTAMVRIETEGKTFDVKALVDPCSAVSSMATSLATAFKLTAVNIGAEKAV
FT                 AAVIRSPISEGWRLEAILKVVDGLCCRTPSAPVDPQIAKKFEGIVLADETF
FT                 YRPSSVSLVLGADVITEVMLEGSLPGVGGRPIAMRTVFGWTLSGACH"
XX
SQ   Sequence 8838 BP; 2400 A; 2188 C; 1929 G; 2321 T; 0 other;
     tttggtcctt cgagccggat actaagatcc tctcgaacca ctagcatcgg tggaatttca        60
     tccatatttc aagctaagta atttttttgc aaattatagg tatatgagta catgtacatg       120
     cctccagcat ccgtacccat actcacatac atataattgt tgccattgat tctcctaatc       180
     caagtaaaaa ttactttcgc gcaaattttt cctcctcaaa ggagagaaaa ttttggtccc       240
     caaattttca tacatatata tgtgtccagt acataaggcg ccatattggt tcgcccactt       300
     caagtttttt cctcgcactt tggcatatat aggccaagta tataaggcgc catattttat       360
     ttgcctattt ccaatatata ttttttcgca atttcaaaaa aatattaaca catatgtatg       420
     tatgcagtga atcaaaccta cgaaaaaagt gatctcctac atataagata tatatgtata       480
     tgcaagcaga gtgtgtgaat gtgacaaaaa ttacaaacat atccagtgct acattaaatc       540
     caaaaataaa ggttttgtgc aaatacagtc cactcctggg aaaagtgtgc gcgcagtgaa       600
     aggtggtttt caacgaagag aagaaaattt tcaatacaaa taataaagat ttttaaaaaa       660
     aaaaaaacga aagtgaacca ccctctcaca tataaaagcc acacttagac atttctggtg       720
     accagacacc ctataaagtt gggggcatat cggttagaca cagcaaaaga aatcatatta       780
     aaaaaaaaaa aaaaaaaaaa acattaattt atataaagaa atccgatcca ttcacacctc       840
     tgcatatcgc cattccatat tttcatattt aaaaaaaaag aaaaaagaga aaaagaaatt       900
     tttaaataca tatatatata ctccaacatt ttacatatcc atacacatac atatatatac       960
     atatttttcc atacataaaa ttttacatat atatatacat atccatacac atacatatat      1020
     atacatattt ttccatacat aaaattttac atatatatat tcatatccat atacatatac      1080
     atattttttc catacataaa attttacata ttgattccca tatacatatc catacataca      1140
     tacattccac aaaatttcta attttttcgc acacaaatat atttttccac caccgcgaac      1200
     aaatcccgct atcccttgca gcctatatac atacatacat acgagcatac ataagtaccg      1260
     cttaactgca gtataccagc acagctgcaa gctcatgtgc caaagaccgg cacaaagcaa      1320
     acgaccaaaa gtagctgtgc tgtataccct aggttggcag gcactttgtg gggtatatag      1380
     gttgaagggt cacgttgagg aaaaaatcga ataatattta attggtaaaa atttgtgttc      1440
     cgcgtttttg tttattctat tcccacgcgt tccaagtcgt attttttgga gttatatttc      1500
     aattccaaaa tattcccacg tgctccaagt cgtatttttg gagttacatt tcaagtccaa      1560
     aatattccca cgtattccaa gtcgtatttt tggagttaca tttcaagtcc aaaatattcc      1620
     cacgtgttcc aagtcgtatt tttggagtta tatttcaatt ccaaagtatt cccacgtatt      1680
     ccaagtcgta tttttggagt tacatttcaa gtccaaaata ttcccacgtg ttccaagtcg      1740
     tatttttttg gagttatatt tcaattccaa agtattccca cgtgttccaa gtcgtatctt      1800
     tggagttaga ttccaattcc aaagtgtttc caagcgtttc aagtcgtatc tttggttcta      1860
     ttgcaattcc aaagtattcc cacacgttcc aagtcgcatc tttggagtta tattgcaatt      1920
     ccaaagtatt cccacacgtt ccaagtcgta tctttggagt tagattccaa ttacaaagtg      1980
     tttccaagcg tttcaagtct tatctttggt tcgatttcaa ttccaaagtg tttccacccg      2040
     ctccaagtcg catctttgta gttatatttg aattccaagg tgttccaagc cgttcctagg      2100
     gttttttggc agtgttccaa gtcattccaa acgtaccagc tcgttttctg gttttttttt      2160
     caatctattt caaggcgttt caaagccgtt cttcaagtgg tttggtagtg ttccagtttt      2220
     tcccaaacgt tccagttcgt ctttttggct aattttcaag ccgtgccaag ccagctcacc      2280
     actttataac cgccactctc tggggttatg agcacgagcc cgtcaaaaga cgagaaagca      2340
     gctgagaaca ctgcagcccc gagcaaatcc tcaattgctg ctccaggtca gcgccagagg      2400
     agtaccagcc ctactactcc tccttcccga gcatttcaga ccctctctag tccactaact      2460
     ctcaagtccg caccatcgag cacgaccttt cagcaagcca cgtcagagcc acgacgagca      2520
     agccaaaaag aggtcaaatc attggtacca cttccacaga ttttggtaac cgccccaaga      2580
     gtcactcggt ccgagaccaa aagggtttta gctgcttcca ccatggcttt gaagaagttt      2640
     ggttccattt gcgataaact aagtcagttt gaagtcgaca accacgtcac gtcactgtcc      2700
     gaggtcagcg tatttacgct ccaagtccgt cgtgatcgag ttcaagcgtt gtgggagaag      2760
     gtcgagcagg aatatgagaa atgcgaggca ctcatagatg gtaaagacga taactctgaa      2820
     gatttagcca tccaagctaa atatgacaaa tgctatcaag tttacgagcg atgcacggct      2880
     cgattaaacg agcttatcca tgaaaggtct gctccgactc ctccgaaccg tcatgcgcct      2940
     acctctgcac cagcagaacg aggctgtcga ttgccaccca ttgacacaga agtctttacg      3000
     ggagattatt taaaatggcc cacgttccgt gacttgttta cagccatcta cataagcgat      3060
     tcgcgaattt cccctgttga aaagctgtac catctcctag cgaaaacgag gggtgaagcc      3120
     aacctcattg tagcaaaatt cccgcttaca aatgatggtt ttgaaacggc atggaatgca      3180
     cttaaacagc gtttcgaaaa taagcgactt atcgtgaaca gccaattccg agcacttctt      3240
     gacctgcctc aaatttccca tgagtccgga aaagcattac aggatcatca gaatgctctg      3300
     caggcatcca ttcgcgcttt tgagcactgt ggcctgccag taaccacttg gggaggcatg      3360
     ttcgtatttt tctgttccat caaattgcca aagaataccc tttcattatg ggagcaatct      3420
     ctgggagaca agactgccat tccagagtgg caaatgatgg acgatttcct cactgagcgg      3480
     ttccgtacgc tcgaagcggt ggaaaataca actgcaatgg ctatttcggt tcccacatcg      3540
     aaacctccac gaaatccgat tccagccacc cgaaaggcta atacatttga agccaaggtg      3600
     accaccaaac caaaatcctg tgatctctgt atgaaggaga atcacccggt gcgtcgatgt      3660
     ccccgcttcc ttcagatgac ggtgccagag agggtggcat acataaagaa aaagtccctt      3720
     tgtctgaact gtttcgcaag aggacatcaa gtaaaagatt gtccgagtca gcacaattgc      3780
     ttcacgtgca aggggcgtca caatacgctc ttgcacaagg acgcccgacc ggagaataat      3840
     ccaacgtcgg tcccagctca gcccagttcg cacaatattg tccggactta ctttacctct      3900
     gaggcaaggt cctcacgaga taagttgcta ggtacagcga tcgtggactt ttggcacaag      3960
     ggcactactt atgcttcacg ggcgctatta gacccggctt ctgaagccaa tttcatatcc      4020
     gaaagaatgt tccgactcat gaagttacca ttccaaactg tcagggccga agtgacaggc      4080
     attaacggaa aggtcaatag aaccttgaag gtctgtcaca taagcattcg gtcatcgcat      4140
     ggacctccag tccagatcga gatagaagcg tttgtcttgt cccaagttgc tgatgatttg      4200
     ccgtcatgta cgatagccca agccacactg gaaggaatgc ccaatattcc tctagccgac      4260
     ccctccttca gattaaaggc aaagatcgat ctactccttg gcattgatgt aataccagcg      4320
     gtgactcttt ccggcatcca gaccgaagtg tgcggatctt taatggctca agagacgaga      4380
     ttcggttggg tcatttcagg cccgttgcaa ggggtccccg tcagttcatg tgccgcgttc      4440
     accacgaggg tcgcagttag cagagaggag ggacttgaaa ctcttctcac aaggttttgg      4500
     gaggtggagg atctaccggg caaaccggta gaagattctg actctgtttg cgaggtcaat      4560
     ttccagaaga ccacaagaag agatgttgcg gggagatata cggtctcact tccgtttcga      4620
     gatccaacca acatcaacct tggtcattcc agaccagggg cattggctca gttcctaaaa      4680
     aacgaaagcc gactccttaa aaatattccg gcaaaaactg agtatgacgc cgtcatccaa      4740
     gaatatttgg acttgggcca catgcgtcag gttccatttg acggcactaa taacaatttt      4800
     tatttgccac accatgcggt tttcaagccc gacagcacca caacaaaggt acgggtagtt      4860
     tttaacgcct ctagcaagtc caccaacgga gtaagtctca acgacatact ttaccctggt      4920
     ccggtacttc agtccgatct cactactcag attctcaagt ggcgtttttt ccgagtagtt      4980
     ttcaatgccg acatcacaaa aatgtaccgc caaattatgg tcgatccaat ccacacgcca      5040
     tttcagagga tcctgttccg aaataaagag gggcaacttg gtgattacga gctgaatacc      5100
     gtcacgtttg gcattaactg tgctccgttc ttagccatcc gagtacttca gcaactcgca      5160
     agtgatgtac aatccaaatt tcctttggct agcgatatta tcaagtccta tatgtatgtc      5220
     gatgatgtcc tggcaggggc tcataatgaa acaacggcaa tcgcaatggt caatgaactt      5280
     caagacgctc ttggttcagc tggctttccc ttgcgcaagt ggacatcgaa tgtgaagagc      5340
     gtgctcagtt gtattccaaa gagtcattta ctgaatgctg atttcctcga catcgaagag      5400
     gccagcacag cgaaaacact gggaatccga tggaaagcga ctacggatga gttttatttt      5460
     gtcatctcac cccaagatgt caagtcagct tatactaagc gagaagtcct cgggcagatc      5520
     gccaagctat tcgatcccgc tggctggctg gctccctttg tgattcaagc caaggtgttt      5580
     atgcaagagc tctggttaca agagctaggg tgggatgatc aattgcccag tgaactccat      5640
     cacaggtggc aggattttac aaagagctac tccttccttg accagatccg aattccacga      5700
     tgggttcttc atgacccaaa ttccgacatc caattccatt gtttttgcga tgcgtcacag      5760
     cgggcttatg gtgccgcaat ttacgtgcgc gttagcaatg accaaggcat atcatgctgc      5820
     cttcttgcag cgaaatctag agtcgccccg gttaaaacgg tttcattgcc ccgccttgaa      5880
     ttatgcggag ctacactttt agcggaactg gcagctgcag ttcttccgca acttccagtt      5940
     gataatgcgg aggcttttta ttggtcagat tccaccgtcg tactgtcgtg gttaaataag      6000
     ccaccctgca catggacaac gtttgtcgca aatcgggtag caaagattgt gacggcaaca      6060
     aatgacgccc catggaatca cgttcgttca gaggacaacc cagcagatct ccctagccgc      6120
     ggcctgagtg cgcaggaatt ggtacacaag gatttgtggt ggcacggccc accatggcta      6180
     cgggaaccac aagagtcctg gcagcgagcg acaccactcc cactagacac tgccttggag      6240
     aagcgggtag tgaaggtcca cgtcgcgatc gctaagccag ccaacgagat attatctcgt      6300
     ttttccaatc tggcacgtgc cttacgagtg atagcatatg tgatccgttt cggcagaagg      6360
     tgtcgtaaac tgccaaacga ttactccggg gaggtgacct ctagcgagat caatcaagta      6420
     ctccaggcgt tgatccgagt cactcagcgt gattactttc cgacggaaca tcggtgtcta      6480
     cagcagaaga aatctctgcc cacgtctagc accattctca atttgaatcc tttcattgac      6540
     gcatcaggtg tgatccgagc atgtgggcgc gtgcaacaag cagcggccct tagttacgat      6600
     gagcgtaacc ccattctgtt gccagtagta agtccgttgt cccggctgtt ggtgcttttc      6660
     acgcatcaga tctctctcca tgggggcagc caactggtag tccgtctcat ccgacagaga      6720
     tactggattc caagactgcg gaatctagta aaatcggtgg tcaattcatg caaagtctgt      6780
     gtgatttata aaagaaggct gcaatcacag ctaatgggca cccttccggc ccagcgaact      6840
     actttcgcac gtcctttcac gaccaccggt atagattttg caggtccttt cgacatcaag      6900
     agtttcaccg gccgcgcttg ccgcatatca aagggatatg tgtgtgtctt tgtttgcttt      6960
     tccaccaaag ccattcacct tgaggcaact tcggatttga gtaccgaagc atttctggca      7020
     gcattcgctc gctttgtatc gaggcgaggg tgtccccagc aagtgcagtc cgacaacggg      7080
     aaaaacttcg taggtgcatc cagagtgctt gaaaaagatt tcctaaattc tacccagcag      7140
     aaaatattat cccactacag ccatcagaat ctgtcctggc atttcatccc tcccggggca      7200
     ccacacatgg gagggttgtg ggaggctgga gttaagagtt ttaaaactct gttctacaag      7260
     gccacttcca accaaaggta tacttttgaa gagttctcta cgctgctggc taaggtagag      7320
     gcgtgtttga actcgcggcc gatttctcct atgtctgaag accccaccga ctctttagct      7380
     ttgaccccag gccatttcct agttggcggt ccattgctat ccgtgacgga acctgaaatc      7440
     aaggatcagg taccgtctat cattaaccgg tggcagcgtc tgaaggccgt gagtcagcat      7500
     ttctgcaccc gatggaaaga cgagtatctg aaggagctac ataagcgcaa taagtggcga      7560
     ttcccttcta aaaatcttga agtgggcgat ctggtggtac tcaaagacga caatcttcca      7620
     tttaatgaat ggcgtctcgg gcgaatccac cagacacacc ctggcagtga cggcaatgtc      7680
     cgcgtcgtcg aactgcttac cgctcgcggt attgtgaagc gtcccgtcgc aaagttgatc      7740
     tttcttcctc cagaagaaag aattcaaacc cattacgtaa aactacagta gcgtccagca      7800
     cttggtcctt cctcccaagg aagaagggcc gagctgccag tagtaatatg tgttttatcg      7860
     tcctacatta atccgctttc ttcattattt gtcccggcag cttcctgata ttcgtcaacc      7920
     tagatcccgt ttccatggct ccgagaccgc gttcagtaca ggcatcgaaa gaggagcgca      7980
     gatgttcgcg aggaactgag tccttccgtt gccgagtctg tcgcggaatc catcctctga      8040
     agcgatgccg tcgcttcctg cggctgaacg tggagaagag gatgagggca gtgctggcga      8100
     ataagtactg cgccaattgc ctggcccacc aacattccgg aggaagctgc ttaagcggtg      8160
     ataagtgccg aatctgtgag gaggatcacc acacgctgct tcacttccat gaacagccac      8220
     gtcgacgcac tccaagctcc gtcgtacgcc gagtcacccc cgagtcctcc agacgaaggg      8280
     tcgcgccaac gccagcctcc gatccgaaac tgaccttgac cacactgctg cagcaccgca      8340
     atccgcatct gatgcccacg gcgatggtgc gcattgagac ggagggaaaa accttcgacg      8400
     tgaaggccct ggtggaccct tgttctgcgg tatcgtcgat ggcgacgtca ttggccacgg      8460
     ccttcaagtt gacagccgtc aatatagggg cagagaaagc ggtggcagca gtgatccggt      8520
     ccccaatcag tgaaggatgg cgattggagg cgatcctgaa ggtggtcgat ggcttgtgct      8580
     gccgcactcc aagcgctccg gtggacccac agatcgccaa aaagtttgag ggcatcgtcc      8640
     tggcggatga gacgttctac cgaccgtcgt cagtgtctct ggtcctgggc gcggatgtga      8700
     tcacggaggt catgctagaa gggagtctac ctggggttgg cgggcggccg attgcgatgc      8760
     gcacagtttt tggctggacc ctgtccggag cgtgccatta aactgcctgg gtcttgcact      8820
     cctgcaaggg ggggagca                                                    8838
//
ID   BEL-10_DWil-LTR repbase;    DNA;    INV; 294 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_DWil_;
KW   BEL-10_DWil-LTR; BEL-10_DWil-I.
XX
NM   BEL-10_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-294
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 294 BP; 85 A; 77 C; 61 G; 71 T; 0 other;
     tgtttatgcc caaccgggca acacaagggt taaaggaggc ggaagctttc acctcgcgcc        60
     gctctcccga tggtgcccat cgctctcccc acgaaagaac tccccacact tcgctccaag       120
     cggggcttgg tgccctgctc ttaattaagc tagttttagt gtcaaactta caagtgaata       180
     aaaaagaaca ttgaagtgag attgctgcag tgcccaattt cttgaaggaa gacattttaa       240
     ggaaaaaatt catttagctg cctacttagg aaattcaacc cccctacgaa taca             294
//
ID   BEL-10_FoCa-I repbase;    DNA;    INV; 5337 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5337
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2601-2601 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..992
FT                 /product="BEL-10_FoCa-I_1p"
FT                 /note="DUF1759,."
FT                 /translation="MAPYKEIEKARKERERAQHTIEWLEKKLADHPTNPIT
FT                 VGKVDNYLQTVARNQATVEETFERIVINCDPIDLTPHKDEYEQLMDRVMEL
FT                 SSQFQIIKVSLAPTTPTPTASTGAAPRVDIRLPKLTLPTFDGKIEEWTSFR
FT                 DMFSTAIHTNAHLSNTQKLAYLKTQLKGEAARLIQSLVISDANYDIAWKQL
FT                 GDRYQNDRQLLFAILKRLINQAPIVSPTSTTLRSLVDVSGECIRSLEILGQ
FT                 PVQQWDSILLFTLYQKLDAHSKELYEQSLKDSSVPPLQGLFEFQGARSGWP
FT                 QRSYSNYQAI"
FT   CDS           898..5301
FT                 /product="BEL-10_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KIAASLPCRDYSSSRALEAAGPKEVTQIIKPFDKQQQ
FT                 APKKNHVHHAQNPSPSSEPCKICAQESHAPFKCSKFLAMEVPDRIEVVQKL
FT                 NLCYNCLRGSHAVHKCTTTSSCKQCGRRHHSLIHRAKPTGQNAPTTGNNPS
FT                 LTHHAQTFNTIGQTLLATAIVHVRDVEGVQQQVRVLLDGGSDTHIISRKCI
FT                 RRLGIRYNKKQALVTGLSEVPVGTTQGIVDLEFSPHFNSSLIIGAKDTCVM
FT                 HTVTTHLPLHPCNANLSHLNSLELADETWHNPGEIDMLLGASLFYGLIRGD
FT                 KITGATGEPFALNSDLGWLVVGEVESTKNNNHAFHVQLSKNDEAPTRVEVS
FT                 NADLDHRLTTFWELETLPEAVPLTEEEHTCVEHFRSTHSQRDDGKFVVHLP
FT                 FKSYPPNLGESRDMAIQRLKQLERRLARQPEVSQEYHAFMKEYQELGHMEE
FT                 VPQNEVMSSNNYYIPHHYVLKEESTTTKLRVVFDASARTTNGKSLNDCLLV
FT                 GPTIQEPLFNILLRFRTHPVAFTADIAKMYRQILIRKLDTDYQRIVWRESP
FT                 EHPIKDYRLLTVTYGTGPAPYLATAVVDQHAQNHADEFPLAAVVARRDLYM
FT                 DDCMSGAETVKEALLLQQQLLDLMKCGGFELRKWSSTHPEVTDALPESLRE
FT                 TKSVLSVELGHTIKALGIYWHPSTDQFFFKIDNLTSTEKKVLTKRCILSDI
FT                 AKIFDPIGWLAPVVVTAKIMMQQLWKLELGWDDPVPEEIERSWIHYKSQLK
FT                 QIESIRIPRCIKPSPTSDCQLALLGFSDASEKAYSAVVYLASYSSFSPPSI
FT                 AIVTSKTRVAPVKTVSLPRLELCAAELLAKLMEKVQQALHLRYQHISGWTD
FT                 SSTTYDWIQGSPSRWHRFVANRVTKIQTRILPSQWGHVSGIDNPADCASRG
FT                 IDPSTLSAFMLWWKGPSWLNNGIPSLVVPIHRDSTIDMEERKELVVNKVQV
FT                 HPFSIILQNSSNFSKLLRMTAWMYRFSRNIQSRISTRKLCSQVSGPLHPEE
FT                 INNAMEYWVRLTQHQYFPSDIQTLSNSDNPHVGVKSQILALNPFLDSSGLV
FT                 RVGGRISKSSLAFDQRHPILLPRKSHLTTLLIRYEHERNFHAGPQLLLSII
FT                 QAKYWIIRGRDAIRHQIRQCVPCTKQRATTMQQLMADLPKFRVTPARVFTK
FT                 CGVDYAGPFLLKPMLPRSKTTVKSYMCLFVCCVTRAVHLELVSSLSTEAFI
FT                 ASLRRFIARRGRPSDIYSDCGTNFVGANRELRELTARFANSSHNQEVSNQL
FT                 ANEGIQWHYNAPGSPHHGGIWEAGVKSVKYHLIRTFGTTRLNFEEMSTTFI
FT                 QIEALLNSRPITQESSDPSDLSALTPGHFLIGAPLTAAPDSDLSHLNAGRL
FT                 NRWQLIQQLYQSFWRRWSSEYLTRXQQRPKWMKEHKDIAIGXLVTIKDENM
FT                 PPMRWRLGRVVELHPGTDGHTRIVTLKTKDGTLKRPIVKLCLLPVQGEDSN
FT                 NDS"
XX
SQ   Sequence 5337 BP; 1566 A; 1445 C; 1108 G; 1216 T; 2 other;
     tttttggtct ctatcgaacc ggattacagt gaattcaaac tctaaaaagt gcgtgaaaag        60
     tgatttgagt acgtttcgaa atagacatgg ctccatacaa agaaattgag aaggcacgaa       120
     aagaacgaga aagagctcaa cacaccattg aatggctcga gaagaagctg gccgatcatc       180
     ctactaatcc aataaccgtt ggtaaagttg acaattattt gcaaaccgtc gcccggaatc       240
     aagcaacagt tgaagaaaca ttcgagagaa ttgtcatcaa ttgcgaccct atcgacctta       300
     cgccccacaa ggatgagtac gaacagctaa tggacagagt gatggagttg agcagccaat       360
     tccaaatcat caaggtttca ttggctccaa ccacgcccac acctacggca agcacaggag       420
     cagctccgcg agtggacatc cggttgccaa aactaacact tcccactttc gacgggaaga       480
     tagaagaatg gacatcgttc cgcgacatgt tcagtacagc aattcacacc aacgcacacc       540
     tatcaaatac tcagaaactt gcatatctga agacccaact gaaaggagaa gcagcgagac       600
     tcatccaatc attggtcatc agcgacgcca attatgatat cgcctggaaa cagctaggag       660
     accggtatca gaacgatcgt cagttactct ttgctatttt aaagcgactc atcaatcagg       720
     ccccaatcgt aagccccaca tcgactactc ttcgttccct tgttgacgtt agcggcgagt       780
     gcatcaggtc actggagatc ctgggacaac ccgtacaaca atgggattca atcctgctat       840
     tcactctcta ccagaaattg gacgcacact ccaaggaact gtacgagcag agtctgaaag       900
     atagcagcgt ccctcccctg cagggattat tcgagttcca gggcgctaga agcggctggc       960
     cccaaagaag ttactcaaat tatcaagcca tttgataagc aacagcaagc tcccaagaaa      1020
     aatcatgtgc atcatgccca aaatccatca ccatcgtcag aaccatgcaa gatttgtgca      1080
     caagaatctc acgccccttt caaatgcagc aagtttttgg ccatggaagt tccagatcgc      1140
     atcgaggtag tccagaaact gaatctttgc tacaattgtc tccgaggtag ccacgccgta      1200
     cataagtgca ccacgacttc atcctgtaag cagtgtgggc gcagacatca ttccctcatc      1260
     cacagagcca aaccgactgg tcaaaacgcc cccacaaccg gcaacaatcc gtcactcaca      1320
     catcatgctc aaacattcaa cacaattggc cagactctcc ttgcaactgc aattgttcac      1380
     gttcgagatg ttgaaggagt tcagcaacaa gtacgtgtcc ttctggatgg cggctctgat      1440
     acgcatatca ttagccgaaa atgcatcaga cgcctgggga tacgctacaa caaaaagcaa      1500
     gcattggtta ccgggctatc tgaggtaccg gtaggcacaa cccaaggcat cgtggacttg      1560
     gaattcagcc ctcacttcaa ctcatcgctc atcattggag caaaggatac gtgtgtcatg      1620
     cacacggtca caactcatct tcctcttcat ccatgcaacg caaatctaag tcatctcaac      1680
     tcgctcgaat tagcagatga gacctggcac aaccctggag agatcgacat gctgctagga      1740
     gcatctctct tctatggcct gatccgtggt gacaaaatca ctggagcaac aggagaaccc      1800
     ttcgccctca attccgacct aggatggctg gtggtgggtg aggtagagag cacaaaaaac      1860
     aataatcatg catttcatgt tcaactaagt aaaaatgatg aagcaccaac aagagtagag      1920
     gtatcaaatg ctgatttgga ccatcgtctt accacttttt gggaacttga gacgttacca      1980
     gaagccgtac cacttacaga agaagagcat acttgtgtgg agcacttccg ctcaactcat      2040
     tcgcagagag atgatgggaa attcgttgtt catcttcctt ttaagtccta tccacccaac      2100
     ctcggcgaat cacgcgacat ggcaatccaa cgactgaaac aattagagcg acgccttgcc      2160
     cgacaaccag aagtcagtca agagtaccac gcttttatga aggagtacca ggaacttggt      2220
     cacatggaag aagttcctca aaatgaagta atgtccagca acaattacta catccctcac      2280
     cattacgtat tgaaggagga aagtacaact accaaacttc gggttgtatt cgacgcctct      2340
     gctcgcacca cgaacggcaa gtctctcaac gattgcttat tggttggtcc cactatccaa      2400
     gaaccgctgt tcaacattct gctacgattt cgcacacatc ctgtcgcctt cactgcagac      2460
     attgcaaaga tgtatcgcca gattttaata agaaaattgg acaccgacta ccagcgcatc      2520
     gtgtggagag aaagccctga acatcccatc aaggactatc gcctacttac cgttacttac      2580
     ggcaccggtc ctgcccccta cttagccact gctgtcgtcg accaacacgc ccagaaccat      2640
     gctgacgaat ttcctcttgc agccgtagta gcccgacgtg acttatacat ggacgattgt      2700
     atgagcggag ccgaaacggt aaaagaagca ttacttcttc aacaacaact cctcgacctc      2760
     atgaaatgtg gaggattcga actacgtaaa tggtcatcca cccaccccga agtcactgac      2820
     gctttaccag aatcgctacg tgaaacaaag tcagtattgt ccgtggaact tggtcacacc      2880
     atcaaagcac tggggatata ctggcacccg tcgactgatc aattcttctt caagattgat      2940
     aacctcacga gcacagagaa gaaagttctt acaaaacgct gcatactctc agacatcgcc      3000
     aagattttcg accctatcgg ctggttggct cccgttgtcg tcacagctaa aatcatgatg      3060
     caacagttat ggaaattgga gctaggatgg gatgatccag taccagaaga gattgaacgg      3120
     agttggatcc actacaagtc gcaactaaaa caaattgaat caattcgaat tccacgctgt      3180
     atcaaacctt caccaacttc cgactgccag ctcgcccttc taggattttc agacgcatcc      3240
     gaaaaggcct actctgcggt ggtgtacttg gctagctact catcgttctc tcctccaagc      3300
     atcgccatcg tcacgtcgaa aacacgcgtc gcccccgtca aaaccgtgtc actaccacgt      3360
     ttagagctct gcgctgcgga acttcttgcc aaactcatgg agaaagttca gcaggctctc      3420
     catcttcgat accaacacat tagtggctgg actgattcct ccacgaccta cgactggatc      3480
     caagggtcac catcaaggtg gcaccgattt gtggctaaca gagtcaccaa aatccaaacc      3540
     agaatacttc cttcgcaatg gggacacgtt tctggcatcg acaatccagc agactgcgca      3600
     tcgagaggaa tcgacccttc tacgctttcc gccttcatgt tgtggtggaa gggccccagt      3660
     tggctcaaca atggtattcc ttctctggtc gtgccgatcc atcgcgattc aaccatcgac      3720
     atggaggaga gaaaggaact cgtcgtcaac aaagtccaag tacacccctt ctctataatc      3780
     ctacaaaatt catccaactt ttccaaacta ctgcgaatga ctgcttggat gtaccgtttc      3840
     tcaagaaata tccaatcacg catttcaact cgaaaattgt gcagccaagt cagtggaccc      3900
     ctacatcccg aagagatcaa caatgccatg gaatattggg tgcgtctcac acaacatcaa      3960
     tatttcccct ctgacattca aaccctcagt aattctgata accctcatgt gggagtaaaa      4020
     agccaaatcc tcgcattgaa tccctttctc gattcgtctg gtctcgttcg agtgggagga      4080
     agaattagca aatcatccct tgcttttgac caacgccacc ccatactgct gccgaggaag      4140
     agtcatctta ctaccctact catccggtat gaacacgaga gaaactttca tgcaggacca      4200
     caactcttgc tgtcaattat ccaagcaaaa tactggataa ttcgtggacg agatgctatt      4260
     cgccaccaaa ttcgccaatg tgtaccatgc acaaaacaga gagctacaac aatgcaacaa      4320
     ctcatggctg acctaccaaa gtttcgagtg accccagcca gagtattcac caaatgtgga      4380
     gtggattacg ccggcccgtt tttgctaaag ccaatgttac cacgtagcaa gacaaccgtc      4440
     aagtcctaca tgtgcctatt cgtctgctgt gtgactcgag ctgttcactt ggaactcgtc      4500
     agcagcttgt cgacagaggc cttcatcgca tcattacgac gattcatcgc acgaagggga      4560
     cggccttctg acatctactc agactgcgga acaaattttg ttggtgccaa tcgcgaactc      4620
     cgagaattga cagctcgctt tgccaattca tctcacaacc aagaagtatc aaaccagcta      4680
     gcaaatgaag ggattcagtg gcactacaac gcccctggaa gtccacatca cggaggaatc      4740
     tgggaagctg gagtcaagtc ggtaaagtac catctcatcc gaacttttgg cacaacccga      4800
     ctcaactttg aagagatgag taccacattt atccaaatag aagctctact gaattcccga      4860
     cccataactc aagaatcgag tgacccaagt gacctgtctg ctctaactcc aggccacttc      4920
     ctgattggag ccccactcac cgctgcgccc gattccgacc tcagccatct taacgccggt      4980
     cgactcaacc gctggcaact catccaacaa ttgtaccagt cattctggcg gaggtggtca      5040
     tccgagtacc tcactcgcmt tcaacaacgc cccaagtgga tgaaagaaca caaagacatt      5100
     gcaattggak atttagtcac aatcaaggac gaaaatatgc cccccatgcg ctggcgccta      5160
     ggacgtgtag tcgaactgca tccaggaacc gatggtcaca ccagaattgt tacactaaaa      5220
     accaaggatg gaactttaaa acgaccaatt gtgaaattgt gtttactgcc agttcaaggt      5280
     gaagattcaa ataatgactc ttagtgttga aatggtgcca cttcaaggtc cggggaa         5337
//
ID   BEL-10_FoCa-LTR repbase;    DNA;    INV; 563 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-563
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2560-2560 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 563 BP; 175 A; 128 C; 54 G; 206 T; 0 other;
     tgatcggttt cataagttat tattttacat ttactgtcca cccaattcgt ttgcatccaa        60
     ggacattacg agattttata accatttgta atcttattct caagttcagt cttttcctga       120
     ttctttgacc tgatgtacat gtcgccgtct caattataca aatattttat cttacttaat       180
     atgtacttct caattttacc ttttctaatt gtatgaaagg acaaaatacc gatatgataa       240
     cataatgtgt ctccttactt cttatcaaat tatcctaatt caattaacct tcaaaatgta       300
     atttaaccaa tgctcaacca atattctttg ccactcttct caagcttacc ttacgagcca       360
     catcagccca attcatttta agttctaacc atttttatgt atgacaaggc ttgttttttt       420
     tttttaaact gaagtaaaac acattgagca aaattaactt aacaagctgt ccgagaactc       480
     ttaatttcct aaaaagtctg tccttctcaa aaccacgcca tcatcatcac aaaatcttcc       540
     atcctcaaat cacacccaca tca                                               563
//
ID   BEL-10_LH-I repbase;    DNA;    INV; 5857 BP.
XX
AC   ADOQ01004162;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_LH_;
KW   BEL-10_LH-LTR; BEL-10_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5857
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004162; Positions   12050    6194.
XX
CC   Positions [4712-5263] - Integrase core
CC   'CTAGT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           866..5413
FT                 /product="BEL-10_LH-I_1p"
FT                 /translation="MFDSMVIRESGLSNVQKFYYLKSSLTGTALSLIKNLP
FT                 ITDANFESAWKLINDHYQDVQVLTFSLIVRLLKFKPVNGDNPAALEALVNQ
FT                 TREILVSLENLNQLSWDSILVVMTLMRLEPTMRKSWEESIGKREMFPKYEE
FT                 LEQFLNGKIHALNVASIKSGVTCLNDNARTKNIRSKNGVDSKVTSHVANTD
FT                 TSVCHLYSATHHISKCAKFKAMSASERLVSARAVHLCFNCLTKGHFPPSCK
FT                 GKSGCDKCKKRHHKMLHEAFSPRPSDPELRHSNALTSVSNVDSANSSNLTS
FT                 CHSGVAKSKTLGPVLIATAWVFVRTTEGRELPFRAVIDSGSECSLLSEAAA
FT                 QALRVQRHACSVSISGTGATVSGIVKHSTRVELRSRTNSEVVVVIEPLILS
FT                 RLSNYVPRRVVKATEWTGVGQLTLADPDPCSDKPIDLILGADCYDEIILQD
FT                 RVKFPGEPYAIHSRFGWVLRGPVDDGPINILSSHTTISSLHVTPNTDLTRA
FT                 IERFWEVEEIPTSKQLSAEDKYCEELFVATTNRDASGRYNVALPFKEDIPI
FT                 NIGDSHKNSLRMYETLERRLRKDRQLSVEYNNFLSDYLRLGHMSPYTPADL
FT                 EEQRCFIPHHPVLKPSSTSTKVRVVFNASARTGNGRSLNDCLLIGPKLQAD
FT                 LCAILLRWRWPRYVCAADIAKMFRQIRVHYDHTRFQLILWRKSEKDVVTPY
FT                 RLRTVTYGTASAPFLALRVLRQLAEDEKHRFPLAAENVVFNSYVDDIFFSA
FT                 SEIEDCREIREQMIGLTNAGGFPLHKWSSNCPDLISDLSETVRDPAQDIDF
FT                 KEDDQLKILGIYWAPLEDAFSFRIASEIPTHLTKRTFLSHISRIYDPLGWL
FT                 SPVIITGKILIQQLWLSGIGWDTTLPSDLNDRCQSFCNGLTTLATISIPRW
FT                 VNTRRDSSIEIHGFADASQAAYAAVIYLRIIYTHKVYVFLLTSKSKVAPLK
FT                 TVLVPRLELCAAELLSRLIVWTTTALNVEQVPVYAWTDSTVTLAWINKPPT
FT                 TWKVFVANRVSLIQTQYPKANWRHVPTQDNPADLASHGVSPTQLIESPLWW
FT                 YGPSWLSGELETWPSVGASDSLPTSDLEARSVIIHVTNVSEWELSTRYSEW
FT                 SKLLKVTALILRFVKLTKRQLPRTKLLYTTQLMTEAKTFWIKSMQSSLYTT
FT                 ELNLLRAGKRLPRSSSLLPLGPFIDDDGVIRMGGRLMHAPLTFAQKHPIIL
FT                 SQTPLTRIIVRDAHLRSLHGGTSLTLRLLREEYWILRAKIIVRSIIGQCVI
FT                 CSRHRANLSKQKMAHLPEIRINVARPFMKVGIDYAGPLPVRAFAGRGHQSR
FT                 KAYMALFVCLITRAVHIELVTDLSSAAFIAAFRRFCSRRGIPAIVLSDNGT
FT                 NFRGAQTELYRMFYAGMCDGAVESSMASLGIEWHFIPASAPHFGGIWEAGV
FT                 KSVKHHLKRIVGVHTLTIAELETLLCQVEACLNSRPIAGLSNSPDDLSYLT
FT                 SGHFLTGAPLLALPDASLLERPESRLSRYQLIQQMRDRFWHVWRLDFLNSL
FT                 "
XX
SQ   Sequence 5857 BP; 1458 A; 1367 C; 1403 G; 1629 T; 0 other;
     tggtccttcg agccggatat aatacgtgcg tcgttgaaat ttaaagtgca tattctatag        60
     agtgcacgtg ctgcaaatcg gattatcacc cttattcatg cgcattcgtg ccataaaacg       120
     cgatagactg ccacgtggtc cttctctacg tgtctttgaa atcgcgccca gaagtgattg       180
     atcgtgattg tggcgaacag acacctgaac agtgaaatac agtgacacga tcggagtgat       240
     agtttgactc catttattgc gacggttcaa gtccatcgct tacgtgactc gcccgtcatt       300
     ctattgtgat agtttatcac acggttaaat aattctttga agaattattt ctttctcctg       360
     ccgtgcattg acagttggtc gatacataat gcctggagat accctcaaag tgccgacggc       420
     gactcaaggg aggacccgta cacgctctca aggcagtgtc acagcgttac tcgtcacaca       480
     gcgtgatcaa atacgctccg tgatccgtac ttgcaattcg gccgcgaagc tcacggccac       540
     gtcagcctcc atgacggtct caacgaagct ccaaacattg atgcatctgt gggatgagtg       600
     ccgatgtact cataaggagc tgctagaata ttcgacggag actgacgtcc ttgcgtatct       660
     tcaaagctcg gagtacggtg acgtggaaga ccgagttctt gacgcgacgg acacgctcac       720
     cgctttgcag agccatcaac cttcgacatc ttcctcgggg agtgacgctg ccaccgcatc       780
     tttgactttg aggttcacca atctcgtgcg cattccactg ccgacattca acggagatca       840
     gaaggaatga gctcatttcc gagatatgtt tgactcgatg gtcattcgtg agtctggatt       900
     gtctaatgta cagaagtttt attatttaaa gagtagtctg accggtacgg cattgtcgtt       960
     aattaagaat ttacccatta ccgatgcgaa tttcgaatcg gcttggaaat taataaatga      1020
     tcactatcaa gatgtgcaag ttttgacatt ttctcttatc gtacgtttat tgaaatttaa      1080
     gccagtaaac ggcgataatc ctgccgcatt agaagctcta gttaatcaaa ctcgcgagat      1140
     acttgtttcc ctcgaaaact taaatcaatt gtcgtgggat tcaatattag ttgttatgac      1200
     gcttatgcgt ctagaaccga cgatgcgaaa gagttgggaa gagagcattg gtaaacggga      1260
     aatgtttccg aaatacgagg aacttgagca atttctgaac ggtaaaatac acgctttgaa      1320
     tgtggcctcg attaaaagcg gagtcacatg ccttaacgac aatgccagaa cgaaaaatat      1380
     taggagtaag aacggtgttg actctaaggt tacatcgcac gttgcgaata ctgatacttc      1440
     agtttgtcat ttgtattcag ctactcatca catatcgaag tgcgcgaaat tcaaggcaat      1500
     gtctgcaagc gaacgtttag tttccgccag agcggtacat ttgtgtttta attgtctcac      1560
     taaaggacat tttccgccga gctgtaaagg caaatcgggt tgcgataagt gtaagaagcg      1620
     gcatcataaa atgcttcatg aagcattctc gccgcgccca tcagatcccg agttacgaca      1680
     cagtaacgca cttacttccg tttcgaatgt cgattccgcg aattcatcta atttaacttc      1740
     gtgtcattcg ggagtcgcca agtcaaaaac tttagggccg gtgttgattg cgaccgcgtg      1800
     ggtgttcgtg cgcacgactg aaggtcggga actgccattc cgcgcagtta tagactcggg      1860
     ctccgagtgt tcgttgctat ccgaagcagc tgctcaagca ttacgcgttc aacgacatgc      1920
     atgttctgtt tcaatttcgg gtaccggcgc caccgtttcc gggattgtga agcactccac      1980
     acgcgttgag ttacggtcgc gaacgaattc tgaagtggtc gtcgtgatcg agcctcttat      2040
     tttgtcacgg ctctctaatt atgttccgcg acgagttgtt aaggccactg agtggaccgg      2100
     cgtcggccaa ctgacattgg ctgaccccga cccctgcagt gacaaaccga tcgatttgat      2160
     tctcggtgcg gattgttatg acgagataat acttcaagat cgggtgaagt ttcccggaga      2220
     accgtacgct attcattcac gattcgggtg ggtgctgcgc ggcccggtgg acgacggtcc      2280
     gattaatatc ttgtcgtcac atacgactat ttcttcgtta cacgttacgc ctaataccga      2340
     tctgactcga gcaatcgaac gcttttggga agttgaggag attcctacat cgaaacagtt      2400
     atccgctgag gataaatatt gcgaggaact cttcgtcgcg accactaatc gtgatgcgtc      2460
     cggaagatat aatgttgcgt taccctttaa ggaggatatc ccaattaata ttggggattc      2520
     tcacaaaaat tcgctccgca tgtatgaaac tttggagcgt cgcttaagga aggatcgaca      2580
     gttatctgtt gagtacaata atttcttatc cgactattta agattggggc atatgagccc      2640
     atatacaccc gcggacctcg aggaacagag atgctttatc ccgcatcatc ctgtattaaa      2700
     accgagtagc acttcgacga aggtgagagt cgtattcaac gcgtctgcgc gcactggcaa      2760
     tgggcggtct ctcaatgatt gtctccttat tggaccaaag ttgcaagctg atctttgtgc      2820
     catattatta cgttggcgct ggccccggta tgtgtgtgcc gccgacattg cgaaaatgtt      2880
     tcgacaaatt cgcgtgcact atgatcatac gcgttttcaa ttaattctct ggaggaaatc      2940
     ggagaaagat gtggttactc cttatcggtt acggacggtg acttatggca ccgcttctgc      3000
     gccttttctg gcactgcgcg tcttgcgaca gttagcagag gacgagaagc atcgcttccc      3060
     tctggctgcc gagaacgtcg tcttcaattc gtatgttgac gatatatttt ttagcgcgtc      3120
     ggagattgaa gattgtcgcg agattcgaga gcaaatgatc ggactgacca acgcgggcgg      3180
     gttccctcta cacaaatgga gttccaattg tccggattta atctccgatc tatccgaaac      3240
     agttcgcgac cctgcacaag acatagattt taaagaggat gatcaactga aaatccttgg      3300
     catttattgg gcaccacttg aggatgcctt tagctttcgt attgcttcag agattccgac      3360
     tcatttaact aaacgcacct ttctctcgca tatatcgaga atttatgatc cattaggttg      3420
     gctgtcgcct gtcatcatca ccggtaagat cctcattcaa cagctatggc tgtctgggat      3480
     cgggtgggac acgacccttc cttcggactt gaatgatcga tgtcaatctt tttgcaacgg      3540
     actcactacg cttgctacta ttagtattcc gcgctgggtg aatacccgaa gggactcaag      3600
     tatcgagatt cacggtttcg cggatgcgtc ccaggccgct tacgctgccg tgatttatct      3660
     cagaataatc tatactcaca aagtttatgt atttttgtta acaagtaaga gcaaggttgc      3720
     tcctttgaaa acggtcttgg ttccacgttt ggaactctgc gccgccgagc tcttatcgcg      3780
     actcattgtt tggacaacta cagcgctgaa tgtggagcaa gttcccgtct acgcctggac      3840
     ggattccacg gtcacattgg cttggattaa taagcctccg actacgtgga aggttttcgt      3900
     agcgaatcgg gtgtctctca ttcaaacgca atatcctaaa gccaattggc gacacgttcc      3960
     tacgcaggac aatcctgcgg atctagcgtc tcacggagtc tctccgactc aattaataga      4020
     aagtccacta tggtggtatg ggccctcatg gctctccggt gagctcgaaa cttggccctc      4080
     tgttggcgct tctgatagcc tgccgacttc tgatcttgag gctcggtcag tcattattca      4140
     tgtcaccaac gtatcagagt gggaactatc cactcgttac tctgaatgga gcaaactact      4200
     caaggtgacc gcgctgatct tacgcttcgt gaagctgaca aaacgacagc ttccccgtac      4260
     gaagctatta tataccacgc agttgatgac ggaggccaag accttttgga tcaaatctat      4320
     gcaatcgtct ttatatacga cagaactcaa tttattgcga gccgggaaaa gattaccgcg      4380
     gtcgagttcg ttattaccat taggtccgtt cattgatgat gacggagtta ttcgtatggg      4440
     aggcagattg atgcacgctc cattgacatt cgctcagaag catccgataa tccttagcca      4500
     gacaccgcta acgcgcataa tagtgcgtga tgcacacttg cgctctctac atgggggaac      4560
     gtcgttgaca ttacgtctac tccgggagga gtattggata ctacgagcaa aaataattgt      4620
     tcgatcgatt attggtcagt gtgtcatctg ctctcgacat cgggcaaact tgagcaagca      4680
     gaaaatggct catttgcctg agatacgaat taatgtggcg cgtccgttta tgaaagtcgg      4740
     gatagattat gccggacctt tgccagtgcg cgccttcgcc ggacgtggtc atcaatcccg      4800
     taaagcctat atggcccttt tcgtatgctt gatcacccgt gcggtgcata tagaactcgt      4860
     taccgatttg tcttccgctg cattcatcgc cgcttttcga cgattttgtt cgcgccgtgg      4920
     gattcctgcg atagtattaa gcgataatgg aactaacttc cgtggcgcgc aaacggaatt      4980
     gtaccgtatg ttttacgctg gtatgtgcga tggtgccgta gaatcgtcta tggcctcgtt      5040
     aggcatagaa tggcacttca ttccagcctc agctccgcac tttggcggca tttgggaggc      5100
     tggagtaaag tcggtgaaac accacttgaa gcggatagtt ggcgtccaca cacttaccat      5160
     tgccgaacta gagacactgt tgtgtcaggt ggaggcctgc ttgaattcgc gaccaatcgc      5220
     tggactctcg aattcacccg acgatctatc ttatttgaca tccggtcact tcctgaccgg      5280
     cgctccactt ctagcgttgc ctgatgcttc gctcttggag cgtccggaat cgagattgtc      5340
     cagatatcag ctcattcagc agatgcgcga cagattttgg catgtttggc gactggattt      5400
     cctaaactca ttataaaagc gtaataagtg gcacaatcag tgcgcgaata tgagaatggg      5460
     tgacattgtc atcattaaga acgacaacgc gccgccctct cgatgggaat taggtcgtat      5520
     aactcaatgc ttcccaggtg aagatgggtt gatacgcgtt tgcgaagtga agactgctac      5580
     ctccaccttt cgtcgaccta tacacaaact gtgtcttctt ccgatcgctg atcgagacga      5640
     agaggatcac aatttgtagt tccgttttct tggtattata ccttacggcg ggcggcgatc      5700
     aacgcccacc aatatgagta tattatgtct ctagattaag attagagtaa ttaagaaaag      5760
     tatgtaattt agtatcttat ctagttaaac tgatgtaaat aataattagt ttagtatact      5820
     tgtttatgtc gcttattaat aagcgaggcg agcggta                               5857
//
ID   BEL-10_LH-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   ADOQ01004162;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_LH_;
KW   BEL-10_LH-I; BEL-10_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-462
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004162; Positions    6193    5732.
XX
SQ   Sequence 462 BP; 97 A; 108 C; 112 G; 145 T; 0 other;
     tgttcgtgcg aatatgatat gttcgtgcga atatgatata gagcgtgcga atcgatatgc        60
     gcgcgccatc tctgatgatc gaggcgtggc tcggagcgat tattaatcgc gatcacactt       120
     gatttccgtt ttaaatcatc atggatccgg aaggtcgtag cgacacttcc gaatgagagc       180
     gctcttctct tccgcacgcc gtgctgagtc gacgtatttt tcacgtatcg tgtcgatatc       240
     agtttcgtgt ccgttgtaat tctgttccgt ctaatgtgtg tttactcgtg ccgagagtat       300
     acgaatgtac ttgactgtgc ggaataaaca tctggactgt cacgaggagc gagttattca       360
     tttctcagcc tcgtctattg tcgccgtgca atccaccatt tttctgaccg cgtgctccgg       420
     tatttaccgc gctctccttt atatttacga gtgacgagaa ca                          462
//
ID   BEL-10_MoPha-I repbase;    DNA;    INV; 5708 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5708
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1127-1127 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           420..5600
FT                 /product="BEL-10_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTELRKLKYSRGALKATLTRAITFLESENAQHAFLSQ
FT                 LRERKNKIVQTWDQFNDIQSSIESIEEVDDAAVRIEFEESYFGIVSRFDQL
FT                 IIDREAAVAQETGANHPQVADQRDQEYHCRLPKINPPKFAGGYDEWYPFRD
FT                 TFLSMVHNVRAIPDIQKFLYLRGALVGKAAEIIESLEVSAANYHEAWQMLT
FT                 MRYDKKRLIIQKHIQAIXGLPVLTKENHTALRELCDSILKHVRALKAIGRP
FT                 TDQWGDLLVYLITSKLDTVTNKAWEDSLVEVEYPTLKALMEFLDRRCNTLE
FT                 IIQKKAQPSSAISNTDKQRPQKVSSNVATHKRECPICHGEHFTFACESLSR
FT                 MSIPDRIVAVKGSRLCINCLRSGHRAKDCTSGGCKKCSKKHNTLLHIETSV
FT                 NSQETSQGDSKSPTTTTTDDKKLTLTSLSSSNADCDDFKKHAWLSTAIIKI
FT                 LNRDNKKVTCRALLDAGSQSNFITRSLAQRLGLELQNVNVPVVGVNQVTSH
FT                 VRDMVKVSIYSRLYDYQRNLDCLVLRQITDRIPSSHADDYNINIPANLRLA
FT                 DPNFYIPGGIDLLLGADVFWNILCVGQIKATSLHPVLQKTLFGWILGGTIA
FT                 TKAHASTNSGGATMCNLITNQELDQSLSKFWEGEQCSERPNLTHEEKLCEE
FT                 HFAKTTRRSMNGQFIVRLPFRENMIEQLGESKATVQKRFYALERRLQRDSD
FT                 LKMKYTQFLKEYIELGHMEKVKDSVVAEPGYYLPHHPVFKDASQTTKCRVV
FT                 FDASCKTSTGVSLNDTLMVGPVLQPELLDIILRFRTWQFVVTADVEKMYRQ
FT                 VLVEKAQRSYQRILWREDPFEDLAVYQLNTVTYGTASASYLATRALQEIAH
FT                 IKQKEYPTGSSTILSDFYVDDLVTGADCLDQLSNICKEVICVLAQAGFNLR
FT                 KWASNAPALLMELPKSSSDSIAILNKDDRLSTLGLQWHSNNDMLHYEVKEQ
FT                 FSKSVTKRIILANIARLFDPLGLLGPVIVTAKILIQRLWQLKIEWDETVPL
FT                 DIQTKWRSYEAQLPALNGFSIPRKVVGSAQPRSVELHGFCDASTEAYGACV
FT                 YVKTSVHDHHEVHLLCAKSRVAPAKSTTLPRLELCAAHLLAQLTKRIRDII
FT                 PVKIDKTYYWSDSMIALAWIRSDSRRWSVFVSNRVGQIQESTDPHSWNHVK
FT                 TKDNPADAISRGVTPLQLIQSQLWWNGPAWLTLDRNHWEVDSTTSLSVKDL
FT                 PEIRKTALITTKPFEEWSIFHTISSLQRLRRVAAYILRFINNMRTSKENRN
FT                 VGFLTATELNSAILRLAKIIQGYSFSAEIKALQNQKAIPHDSKLLGLSPFM
FT                 DSGGIIRVGGRLSHSYLPYQTKHPIVLPTRHPFTKMLIIHEHQRLLHAGPQ
FT                 ATLASLRQRFWPISGRSAVRHVTRSCLRCFRTSPKASPLIMANLPPSRVSL
FT                 SRPFLHCGIDYAGPFMIRDSKKRNSKSSKAYIAVFVCMACKAIHLELVMDL
FT                 STEAFLNAFKRFISRRGKPTDLYTDNGTNFVGASRELKELRQVVFKELQQK
FT                 TVLDFLAQEEIRWHFNPPLAPHFGGIWEAAVKAMKTHLKRIAGNALLNYDE
FT                 METLLTQIEAVLNSRPIVPLSADPNDNASLTPAHFLIGDSLTAPVEPTLLD
FT                 VKENRLSRWQRVTQMRQHFWKRWSNDYLNELQQRTKWKTGGPSLKPGQLVI
FT                 VREDATPPLCWPLARVKEVHPSSDGVVRSATIQTSKGLYKRPATRLCPLPF
FT                 DNEDSGN"
XX
SQ   Sequence 5708 BP; 1726 A; 1305 C; 1233 G; 1443 T; 1 other;
     tggtccttcg agccggatat tctaccggat aacgagattg gaaatacgca acagcgatcg        60
     gcacagcgtg acaacatggc cgcgccataa cacatcgaga ataatcattt tgggtgcata       120
     atcagcacaa ggaatacttt cgtcgtgcga aggatcgcag gattgtcgta cggaaatcag       180
     caaaatcgca tctctcgaca gcagacagag agaatttgtt tgttcggcat cgccaagcgt       240
     ctgtagtacg catacacgca gccgtgacac acacacacag tgtcagataa cacaacgact       300
     gaatcgcgtc attacgattc cggtgcaagc actcgcacca cacaggtcag tctccaatca       360
     cattttcttt tgtgttgttt tttcgctctt aacctctgtt ccagcactgc cttattaaaa       420
     tgacagaatt aagaaaactt aagtattcgc gtggagcatt gaaagccacg ttgacgcggg       480
     cgattacatt cttagagtca gaaaatgctc agcatgcctt tctgtcacaa ctgcgcgaac       540
     gcaaaaataa aatcgtgcaa acatgggatc aattcaacga tattcaaagc tcaatcgaat       600
     caattgaaga agttgacgac gctgcagtac gaatagaatt tgaagaatca tactttggca       660
     ttgtctcgag atttgaccaa ttaataatcg atcgtgaagc cgctgttgca caagagacag       720
     gggcgaatca cccacaagta gcagatcaac gtgatcaaga atatcattgt cgcttgccaa       780
     aaattaatcc tccgaaattt gcaggtggat atgacgaatg gtatccgttc cgtgacacgt       840
     tcttgtctat ggtacacaac gtccgagcta tcccggacat ccagaagttt ctatacttac       900
     gaggagcatt agtaggcaaa gctgcggaaa ttatagagtc tctcgaggta tctgcggcca       960
     attatcatga agcctggcaa atgctcacaa tgcgctacga caagaaacga ttgataattc      1020
     aaaagcacat ccaagctatt twcgggttac ctgttcttac aaaagaaaat cacacagcat      1080
     tacgagagct ctgcgatagc attttgaagc acgtgcgggc gttaaaggca ataggacgtc      1140
     cgaccgacca atggggagac ctacttgttt atttgatcac gagtaagctt gatacggtca      1200
     ctaacaaagc atgggaggac agcctcgtcg aagtggagta tccgactctg aaagcattaa      1260
     tggaatttct agatcgacgt tgtaatacac tagaaatcat tcaaaagaaa gctcagccaa      1320
     gtagtgccat ctctaataca gataaacaac gacctcaaaa ggtatcatca aacgtagcga      1380
     ctcacaagag agagtgccct atttgccatg gtgaacattt cacatttgcg tgcgaatctt      1440
     tatcgaggat gtcaatacct gatcgcattg ttgcggtaaa aggcagcaga ttatgcataa      1500
     attgtctaag atcgggacat cgagccaaag attgtacttc tggaggatgc aagaagtgca      1560
     gcaagaagca taacacacta ttacatatcg aaacgtcagt taattcacaa gagacgtcgc      1620
     aaggggattc gaaatcgccc acgacaacta caacagacga caagaagtta actctcacat      1680
     ccctttcttc gagcaacgct gattgcgatg acttcaaaaa acatgcctgg ctatccacag      1740
     ccatcatcaa gatattgaat cgtgacaata agaaggtaac atgtagagcc ctactagacg      1800
     ccggctctca atcgaacttc ataacgaggt ccttagcgca acgattagga ctcgaacttc      1860
     aaaatgtaaa tgttccagtc gtaggtgtca atcaagtaac cagtcatgtt cgagacatgg      1920
     tcaaggtatc catttattca agactctacg attatcaaag aaatcttgat tgtctggttt      1980
     tgagacaaat aactgatcgg attccctcat ctcacgctga tgattacaac attaacattc      2040
     cggcaaattt gcgtcttgcc gatccgaatt tctacatccc aggaggaatc gatctacttt      2100
     tgggagctga tgttttttgg aacattttat gcgtcggaca aattaaagct acatcattgc      2160
     atcctgtttt gcaaaagact ttattcggat ggatcctagg tggaacaatt gcaacaaagg      2220
     cacatgcgag taccaacagc ggcggcgcaa caatgtgcaa cttgattacg aatcaggaac      2280
     ttgaccaaag tctttccaaa ttctgggaag gcgaacaatg cagcgagcgt cctaatctca      2340
     cacatgagga gaagctttgc gaagaacact ttgccaaaac gactcgcagg agtatgaatg      2400
     gccaattcat cgtgcgactg cccttcaggg agaacatgat cgaacagctt ggagaatcta      2460
     aagcaacagt gcaaaagcga ttttacgcat tagaacgaag actacaaagg gactccgatt      2520
     tgaagatgaa atacacacag tttctcaagg aatatataga actcgggcac atggaaaagg      2580
     tcaaagattc tgtggtggca gagcccgggt attatctgcc ccatcatcct gtgtttaaag      2640
     atgcgagcca gaccacgaaa tgcagggttg tcttcgatgc ttcttgtaag acatccacag      2700
     gtgtctcttt aaatgataca cttatggttg gtccggtact gcaaccggaa ttattggaca      2760
     tcatattaag atttcgcact tggcaattcg tcgtgaccgc cgacgtggaa aaaatgtaca      2820
     gacaagtact ggtcgaaaag gcacaaagaa gctatcaacg cattttatgg agagaggatc      2880
     ccttcgaaga tcttgccgtt tatcaactaa acactgtcac gtatggaaca gcctcagcct      2940
     cctacttggc aactcgggcg ttgcaagaaa ttgctcacat aaaacaaaag gaatatccaa      3000
     caggatcatc cacaatatta tcagattttt acgttgatga tctcgtgacg ggcgcagact      3060
     gtctggatca attatctaat atttgcaagg aagtaatatg tgtattagca caggcgggct      3120
     tcaatttgag gaagtgggcg tcaaacgctc cggcgttact aatggaactt ccgaaatcgt      3180
     catcagattc aattgcaatt ctaaacaagg atgacagact atcaactctt ggactacaat      3240
     ggcattccaa caatgacatg ctacattacg aagtaaagga acaattctcg aagtctgtca      3300
     ccaagcgaat catactggca aacatagcac gtttatttga tcctctggga ttactcggcc      3360
     cagttatcgt aacggcaaaa attttgatac aacgcctttg gcagcttaaa attgaatggg      3420
     atgaaacagt accccttgat attcaaacga agtggcgttc ttacgaggct caattgcccg      3480
     ctttaaatgg atttagcatt ccacggaaag ttgttggaag cgcgcaaccg cgctcagtag      3540
     aattacatgg cttttgtgac gccagcacag aagcatatgg cgcctgcgtt tacgttaaaa      3600
     cgagtgtaca cgatcatcac gaagttcact tgctgtgtgc aaaatcacgg gtggcaccgg      3660
     ccaaaagtac aaccttgccc agactggaat tgtgtgcagc gcatttgctg gctcaactaa      3720
     caaaaagaat aagggacatt attcccgtga aaattgataa aacttattat tggtctgact      3780
     ccatgatcgc actagcatgg attcgctctg actcaagacg atggagtgtc tttgtatcaa      3840
     atcgtgtggg acagattcaa gagtcaaccg atccacattc ttggaatcat gtaaaaacta      3900
     aagataaccc agcggatgct atttctagag gcgttacgcc actgcagcta attcagtctc      3960
     agctttggtg gaatgggcct gcatggctta ctctcgaccg caatcattgg gaagttgatt      4020
     ctacaacgtc attatcagtg aaggatcttc cagaaattcg caagactgcc ctgatcacca      4080
     ctaagccttt tgaagaatgg agcatttttc acacgatctc ctctttgcag cgcttgcgtc      4140
     gagtcgcagc ttatatacta cgattcatca acaatatgag aacttctaag gaaaacagaa      4200
     atgtcggctt cttgacagct actgagctga acagtgcaat actacgtctt gccaaaataa      4260
     ttcaaggata ttccttttca gctgagatca aggctctaca aaatcaaaag gcaatacctc      4320
     acgacagcaa gttgcttggg ctttcacctt tcatggactc tggtggcatc ataagggtgg      4380
     gaggaagact atcgcattcg tatcttcctt accaaacaaa gcatcccatc gttttgccaa      4440
     caagacatcc tttcactaaa atgctcatta ttcacgagca tcaaagatta cttcatgcgg      4500
     ggccacaggc aacactggct tcactacgac aacgcttctg gccaatctca ggaagaagcg      4560
     ctgtcagaca tgttactcgt agctgtttga gatgttttcg gacttcacct aaagcaagcc      4620
     cgttaatcat ggcaaatctt ccaccttcga gagtctcact gtctcgccca tttttgcatt      4680
     gtggcattga ttatgccggg ccgttcatga tcagggactc aaagaagcgt aactccaaga      4740
     gttcaaaggc atacatagct gtatttgtat gcatggcttg caaagccata cacctcgagt      4800
     tagtgatgga cctatcaacc gaagcattcc tgaacgcttt caagagattc atatctagaa      4860
     gaggcaaacc aacggatctt tacacagaca acggaaccaa ctttgttggt gcatccaggg      4920
     aactgaagga attgcgtcaa gtcgtcttca aggaacttca gcagaagaca gttctggatt      4980
     tcttagcgca agaagaaata aggtggcatt tcaatccccc tttggcgccc cactttggag      5040
     gcatttggga ggccgccgtt aaggccatga aaactcacct aaaaagaatc gccggaaacg      5100
     cattgctaaa ctatgacgag atggaaacgt tgcttacaca aatagaggca gtgctcaact      5160
     cccgtcctat tgtgccctta tcagctgatc ctaacgacaa cgcatctctc actcccgcac      5220
     attttcttat tggagacagc cttactgctc cagtggagcc tactttatta gacgtcaagg      5280
     aaaaccgcct ctcaaggtgg caacgagtta ctcaaatgcg gcaacacttt tggaagaggt      5340
     ggtcgaatga ctatcttaac gaacttcagc agcgtacgaa gtggaaaact ggaggtccct      5400
     ctttgaagcc aggtcaattg gtaatcgtac gagaagacgc cacccctcca ctgtgttggc      5460
     cattagcacg tgttaaggaa gtacacccaa gttctgatgg cgtcgtgcgc tctgctacga      5520
     tccaaaccag caagggcctc tacaaaaggc cagcgacacg tttatgccct ctacccttcg      5580
     ataatgagga ttcgggcaac tgacaatcca ttcggatttg tatttacttt attattccaa      5640
     ttaattatag cgtttcatat ttttctttca ttttttattg aaaattacta tttccaaggc      5700
     ggccggcc                                                               5708
//
ID   BEL-10_MoPha-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-340
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1076-1076 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 340 BP; 96 A; 74 C; 70 G; 98 T; 2 other;
     tgttcattat tctttaaacg gttcattatt ttcggtmatt gtctacaaaa gaggaaatta        60
     tggttgtgct tttaattcac acgcctgtgt ccctttkggc cttaccgact cgcgatctac       120
     gtggttccct gacgctctcg ataggtgcgc cggaagcggg acacgggcgc cacgcgaaag       180
     gagggacaat gaacgaaacc agtctcgcct cagtcatgtc ggcgatagtt cctagactat       240
     tttaataaat aaagatttat tcatgagtga ttccaaacaa caataaaaaa gtgtttttat       300
     taaaaacgaa ccagccctat cattgttcac gtcatgaaca                             340
//
ID   BEL-10_SI-I repbase;    DNA;    INV; 6668 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SI_;
KW   BEL-10_SI-LTR; BEL-10_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-6668
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 419-419 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [5184-5729] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           889..5238
FT                 /product="BEL-10_SI-I_1p"
FT                 /translation="MPLERAEIDETLARQKRDLELIANFQANTSKQKAAKD
FT                 MTLSDYQTRDRLLEDYWKNFQSRDYALFPHAEELKGRTYFKENLYESGLSA
FT                 YMSAKSWLTERIAARTMPVLSGGPACRSGSIVSTSTSQLERVKLPKFDGTQ
FT                 RDWQSFKSKFQSLVLNDPSITAVIKFQHLLNSLEGEAGGKLKGLEVTGENF
FT                 TTAWESLCSRYDNIFLRFSTHFNALLALPSSAKETSAHLSGLLNTTNESIN
FT                 AFKSLKLPVEHWDMVFIQCIESKLAPATRMDWAKQVETLQDGSFPKFELFK
FT                 KFLEDRIQTLDRVEAVTQASADSKGKSSNGQQGSSGKQPKGKSTAVHTTVS
FT                 SSSKSNSSKSSDPGSCAHCQGPHFISRCKGFAALSQGKRKHLAVNKGLCTN
FT                 CLSNRHKVDECKSQGRCLVCAGLHHTRLHQDGQHSGSTTQHLSESSGETTT
FT                 HVTSSSPQILSESCGTEQLLTTAVVTLQSETGVSLTARVLLDSCAEQCIVS
FT                 EYVVQALNLKRKPAHVIVNGTGGTPNAVAQSRVGLILKSQRDANFSLKFSA
FT                 LVLKKVSNLVPKRRVKPQERWSHLDGLHLADPHYGAPSRVDCILSSAVFGA
FT                 AMLPGVRKAVNPLEAPIAHETVFGWVLMGSAEPNNDLSERTSVHHVSVDHE
FT                 LTKAVARFWETEEVPRVHQLAPSDQDCWDQFKKTTFRNREGRYVVRLPFSE
FT                 TPQFSGIDTTARACMMRLERRFAKQPDVASAYSAFMREYIDLGHMEVVPES
FT                 EVATNQAYYLPHHPVFKRDRGKIRVVFNGSQKDAVGVSLNSRLHAGPKLQE
FT                 DLLVVLLRWCFFRYAFTCDVVKMFRQMLIHRQDLDWQRIFWRFSPETPLLS
FT                 YRLLTVTYGTASAPFHANACLLDLAEAEAHRFPLGSKLLRKNRYVDDFLAG
FT                 GDTPEKAAAARTELVGILSSSGMAVDKWAANHADLLGTAEPLHHRRLTASD
FT                 AVSTLGLKWLPHTDVFNFEVRLPPSPPAVTKRAILSQIATLFDPVGWVCPV
FT                 VIRAKLLLQCLWLQGADWDARVTGRLAQSWLTYRTELTDLEAIDIPRWLGT
FT                 SETMEWHLHGFCDASERAFAATLYVVVPAASHSRLLMAKSKVAPLKAVSLP
FT                 KLELCGASLLARLIAGTLPQLEAQPAQIHCWCDSQVVLSWLQSHPSKWKAY
FT                 VANRVSEISTSLPTAVWRHVKSAQNPADLATRGCTPRQLQESGIWWSGPEW
FT                 LTRPQTEWPSKTVLEATELESRGRVNVWLTRSDLPLSDWLRKFSSFDRMCA
FT                 ILAYVHRWRLNSKLAKPDRRRGFLSSQELAFGSSTLLRLVQMEAFSEEFRS
FT                 LASRGEVRSGSPLRRLLPFVDTHGLIRVGGRLQNSFLSESEKHPVILPKDH
FT                 HVTALLIRKAHISTLHGGYRLVHSYLLQRYWILRANTSIRRIVRSCVRCAR
FT                 HNAITLEQQMARCRPSELNRRYHLRTLESTSPATSG"
XX
SQ   Sequence 6668 BP; 1415 A; 1893 C; 1805 G; 1555 T; 0 other;
     caatttttgg tccttcgagc cggataccaa cggcgttgga atcggagcaa ggacgagcga        60
     taggccggca actcgccacg cggttttgtg agccatcttg gatgccggca cggttctccg       120
     gcgaacattc cgtgcatcct gtgaactctt cgtctttggc gcgtcgcgtg tgtgtgtgcg       180
     cggactcgca agtgcacggt acgtcaggct gttgactggg agcgaggaca tagccgtgcg       240
     gagcaccagg agtcggtctc caggctttct acactcgctc acgccgtgtt gccgtgcgtg       300
     cttgcacgcg ccgtggagca ggacattgag aagaaagcgg tgcgcaaaaa cctcgagtcg       360
     taaacgagct cggggcaacc ggaggaccaa cggcggaacg tggacatcgt ccccgagcac       420
     accccccccc cgcaagcaac gtaagtttgg taagagggga gcggcgcggt gagggacgat       480
     accggcatct acgcttcacg catctacacg cctcgcgcac gtgtctcgct cgctcggagc       540
     acggtgcgaa atcggttgct ctctctctct ccactggcgt tccagcgtgc agcgctctcg       600
     ctcgcacgcc cgcgaacgtg catgctacag cgtgctccgt attggacgct cgctcgcatt       660
     taacgtctca tctccttgcg cgatccgcgg atattcgtgc gacatttgct gactcgtgca       720
     tattcgtgca catttgctga ctttttccgt cgactcgcat tatttgttcg cgaccggact       780
     ctcgtttact ttctttccgc gacggtgctg aaacaatacg cgccttaaat tttattcgcg       840
     ccgttatttg gcgcaaattt aattttgaaa cgcgctgtct tctgcatcat gccgttggag       900
     cgtgcggaaa ttgacgagac cttggcgcgt cagaagcgtg acctcgagct gatcgcgaac       960
     tttcaggcaa atacctctaa acagaaggca gcgaaggaca tgacgctaag cgattatcaa      1020
     acgcgagatc gtctccttga agattattgg aaaaacttcc agtcaagaga ttatgcgctc      1080
     tttcctcatg ccgaggaact caagggtcgc acatatttta aggagaacct ctacgagtca      1140
     gggttgtcgg cctatatgtc ggcgaagtcg tggctaaccg agcgcattgc cgcgagaacg      1200
     atgcctgtgc taagcggtgg acctgcgtgc agatctggtt caatcgtttc gacctcgact      1260
     tcccaactcg aacgcgtcaa gctcccgaaa ttcgacggga ctcagaggga ttggcagagc      1320
     ttcaagagca aatttcaatc gctcgtcttg aacgatccga gcataaccgc ggtcattaaa      1380
     tttcagcatc ttctcaactc cctagaagga gaggctggag gcaagctcaa gggactggag      1440
     gtcaccggag agaattttac tactgcttgg gagtcgctct gcagtcgata cgacaacatt      1500
     tttcttaggt tttccactca cttcaatgcg ttgctcgcgc tgccttcgtc ggctaaggag      1560
     acaagcgcgc atttgagtgg ccttctcaat acgactaacg aaagcataaa cgccttcaag      1620
     tcactgaagc ttcctgttga acactgggat atggtgttca ttcaatgcat cgagtccaag      1680
     ttagctcctg caacacgcat ggactgggcg aagcaggttg aaacccttca ggacggttcc      1740
     ttcccgaagt ttgaactttt caagaagttt cttgaagacc ggatccagac cttggacaga      1800
     gtcgaggccg taactcaggc atcagcagat tccaagggca aatcttctaa cggtcagcag      1860
     ggaagctcgg gcaagcaacc aaaggggaag agcaccgctg ttcacacgac agtttcctcc      1920
     tcttcaaaat cgaacagttc gaagtcctcg gaccctggtt cctgtgcgca ctgtcaagga      1980
     ccacatttca tcagcaggtg caagggcttt gccgctcttt cgcagggcaa acgaaagcac      2040
     cttgctgtca acaaaggtct ttgcacgaat tgcctcagca accgtcacaa ggtcgacgag      2100
     tgcaaatctc aagggcggtg tctcgtgtgc gctgggttgc accacacgcg acttcaccaa      2160
     gacggacagc attccggatc tacaacgcaa catctctccg aatcctcagg ggaaaccacc      2220
     acgcatgtta catccagctc tcctcagatt cttagtgagt cctgcggcac tgagcaactt      2280
     ctaacgacgg ccgtagtcac cttgcaatct gagactgggg tgtctctgac tgcgcgcgtg      2340
     ctcctggatt cctgcgcaga gcaatgcatc gtttcggaat acgttgtcca ggcgctcaac      2400
     ttgaagcgca aacccgctca cgtcattgtc aatggcacgg gcggcactcc aaatgccgtt      2460
     gctcagagtc gagtcggact cattctgaaa tcgcaacgag acgctaattt ttcacttaag      2520
     ttctcagctc tggtgttgaa gaaggtctcc aatctggtgc ccaaacggcg ggtcaagcct      2580
     caggagaggt ggagccatct tgacggcctt cacctagccg accctcacta cggagcgccc      2640
     agcagagtgg actgcatcct cagctcggca gtctttggcg ccgctatgct acctggagtg      2700
     cggaaggctg tcaatcctct tgaggctccg atagcgcacg agaccgtctt cggttgggtc      2760
     ctcatgggca gcgcagaacc gaacaacgat ctcagcgaaa ggacttccgt gcaccacgtc      2820
     tccgtcgacc atgagcttac taaagccgtg gccaggttct gggagacaga ggaggtcccg      2880
     cgtgtgcatc agctggcgcc gagcgaccag gactgttggg accaattcaa gaagacgacc      2940
     ttccgcaaca gagagggccg ctacgttgta cggctgccct tctccgaaac ccctcaattt      3000
     tctggcatcg acacgacggc gcgggcctgc atgatgcgtc tcgaacgtcg atttgccaaa      3060
     caacccgacg tcgcatccgc atactctgcc ttcatgcgcg agtacatcga cctcggccat      3120
     atggaggtgg ttccggagag cgaggtggca acaaaccagg cctattatct gccacatcac      3180
     cccgttttca aaagggaccg tggcaaaatt cgagtcgttt ttaacggctc tcagaaagac      3240
     gcggtgggcg tctcacttaa ttccaggctc cacgctggtc ctaagttgca ggaggatctg      3300
     ttggtcgtgc tgttgagatg gtgcttcttc cggtatgcgt tcacctgcga cgtggtgaaa      3360
     atgtttcgcc agatgttaat acaccggcag gatttggact ggcagcgcat cttctggagg      3420
     ttctcacccg agacgccgtt gctttcgtac cgcctgctca cggtgacata tggtaccgcc      3480
     tctgcaccgt ttcacgccaa cgcctgtcta ttggacctcg ccgaagcgga ggcgcatcgc      3540
     ttcccactcg ggtccaagct gctccgaaaa aatcgctatg tggacgattt tttggcgggg      3600
     ggagacacac ccgagaaagc ggcagctgct aggacggaac ttgttggcat cctatcctcc      3660
     tcgggaatgg cggtggacaa gtgggctgcc aatcacgccg accttctcgg tacagctgag      3720
     ccgctgcatc acaggaggct cacagcaagc gacgcagtct cgaccttggg cctgaagtgg      3780
     ctgcctcaca cggacgtctt caactttgag gtgcggcttc cgccgtcacc tcctgcagta      3840
     acaaagcgcg caattttgtc tcaaattgcc acgctgttcg acccggtggg ctgggtgtgt      3900
     ccagtggtca tacgggcgaa gctgcttctc cagtgcctgt ggcttcaagg tgcagactgg      3960
     gacgctcgag tcacaggtcg acttgcacag tcctggctta cataccggac ggagctgacg      4020
     gatctggagg ccatagacat tccacgctgg ctgggtacca gtgagaccat ggagtggcat      4080
     ctccacggct tctgcgacgc ttctgagcgt gcgttcgcag ccaccctcta cgtcgtggta      4140
     ccagcagcat ctcactctcg actgttgatg gccaaatcta aggtggcgcc tctgaaggct      4200
     gtgagccttc ccaaactcga gctatgtggg gcttctcttc ttgcgcggct gatcgctggc      4260
     actctgccgc aactagaagc tcaaccggcg caaatacatt gctggtgcga ctcgcaagta      4320
     gtcctgtctt ggctacagtc gcatccatca aagtggaagg catacgtggc gaacagggtc      4380
     agcgagattt ccacctcgct gcccactgct gtttggcgcc acgtcaaatc tgctcagaac      4440
     cccgcggacc tggctacgag gggatgtacc ccgcgacagc tgcaggaatc cgggatctgg      4500
     tggagcgggc ctgagtggct gactcggcca cagaccgaat ggccctccaa aactgtactc      4560
     gaggccacgg aactggagtc gcgcggtcga gttaacgtct ggctgactcg atccgacctt      4620
     ccactttccg actggctgcg gaaattttcg tcctttgaca ggatgtgcgc gattcttgcg      4680
     tacgttcacc gctggcgact caactcgaag ctggcgaaac ctgatcgccg caggggcttt      4740
     ctgtcctcgc aggaactggc cttcggatca tcgacacttc tcaggctggt gcagatggag      4800
     gcgttctcag aagaattccg gagcctggcc tcgagagggg aggttcgatc tggcagcccc      4860
     cttcgtagac ttctgccatt tgtcgacact cacgggttga tccgcgtcgg tggcagactg      4920
     caaaactcct tcctctcgga atccgagaaa catcctgtca ttctccccaa ggaccatcac      4980
     gtcaccgctc tccttattcg caaggctcac atctctactc tccatggggg ttacagacta      5040
     gtacatagct atctgttgca gaggtattgg atcctgcgcg ccaacacgtc gatccgacgc      5100
     atcgtgcgga gctgcgtcag gtgcgcgcgt cacaacgcca tcaccctcga gcagcagatg      5160
     gcccgctgcc ggccatccga gctaaaccgg cgctaccatt tgcgcactct ggagtcgact      5220
     tcgccggcta cttctgggtg aaggcttcac ccgggcgagg tcaaaagaca tcgaaagggt      5280
     acgtggcggt gtttgtgtgc cttgtagtca aggccatcca tttggagctg gtctctgact      5340
     tgaccaccga cgcattctta gcggcatacc gtcgctttac cgcccggcgt ggtctctgtc      5400
     gggtcatcta caccgacaac ggtaccacct tcaagggcag cgaggccgaa ctgcataggc      5460
     tcttctcgga gacctccgcc atcggtcaag ctgtagcggc tgccgtggcg tcggatggag      5520
     tggagtggcg atacatcccc cctcgagctc caaactttgg gggcatctgg gagtctaacg      5580
     tgaagtcgat gaaacgtcat ctttatagag tcattggcga ctctaagctc acatacgagc      5640
     aactgtcgac cgtgctggct agcatagagg cctgcctaat tctcggccga tcagcgcgct      5700
     tagctcggat cctaacgatg cctcagccct gacacctggt cacttcatca tcggaaggcc      5760
     tctggttgct cccccggaac ctttcacgga gatcgatcag gcagggcaac cctgctccgg      5820
     ctggcatttg cttcggctga tgaggagtca cttttggcgg cgctggcggt cggactacct      5880
     ggctcagctg caacagcggg ccaaatggct taagccaaac cggcagcttc aggtgggaga      5940
     cttggtcctg ttcaaggaca agctggctcc tccgacaaag tggccactgg ccagggtggt      6000
     gcaacttcat cctgggaagg atgggctgac gagggtcgcc accatccgct catcgacgtc      6060
     ggagttggtg cgacccgtca acagactcat tctgctgccg gtacacgaac agacactcgt      6120
     taagttttct caatttgagt cctccatggc gggcggcgcc cagtaggaga gctgtatcag      6180
     gactcaagat atgtgaactc tcttgtgtat agtgactgct taacttaagt ttagtctacc      6240
     aaagataccc gcaattcttc tgaattgcca ctgagtgttt aatctctagg tgttgcgggt      6300
     gcctaattca tcttgtaaca tatactcgtt ccattagttt aattcaattt ctgcttagtc      6360
     atgcgttctg gtctcattag ttacgaactc tttcaattta ttcaagtagt gtttaagaaa      6420
     ttgtaatttt aaggccctct tcacagccat ctcatgttgc tgaatcgtga tattgaccct      6480
     gttaaccttt aacttaaatc tgtgaatttt tgggtgtgtt tacctccgac aagttgggtt      6540
     acagtattat cctccaccct gtaatctcgt ttgtgtctac cgcgacatgt atgttaggct      6600
     gtgaccgcac caagttattc tatcgttcga tcgctcgaac ctgacacttt gagcgatggc      6660
     gggcggaa                                                               6668
//
ID   BEL-10_SI-LTR repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SI_;
KW   BEL-10_SI-I; BEL-10_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-405
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 420-420 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 405 BP; 83 A; 125 C; 99 G; 98 T; 0 other;
     tgtttgcgcg gaattgtcgc cgcgaacggg cactcctaaa taatgctcga gctccgcatg        60
     cgagcattac gaatgctcgt aggggggcct cgacagtagc gaatttgaga cccttatctc       120
     catctcgcgg aacgtcgcaa gattcggcgg tcgcgttccc gagcctcgcg ccttttcccc       180
     cccctgatcg gctcctcggt cagcgatttt ccgagcgcga gcctcagctt actgtacgac       240
     ttcgagagag aaacacctgt gcgaaagtcg aataaagtgt ccgctcttgt taatcgcgtg       300
     cgcgttatac cacccggctc tgctactcct cgtcctctcg caacttaact taatttaaac       360
     taaactattt gggaacgcct tcctgcatcg ggaagtgcgc cacca                       405
//
ID   BEL-10_SiCu-I repbase;    DNA;    INV; 5733 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5733
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4977-4977 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..5702
FT                 /product="BEL-10_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MEDIHEGGASEGGGPEEGQRRSSRPNLGQRPDWFGER
FT                 VEDFPSNLLSSTHVTSTGTTMRRTTFVAPPGSIFKKKAEDDAQSVSSVASS
FT                 KVVDMLDDEIKKMESKLTSKVERLSWLKEMRETALKEAQGSQAGDLSEEEE
FT                 EDTGNAVPDPLFGGAQSAIVGSTAGKHYWPTPQQEVQLPIWKRTAVTRPRD
FT                 PPPPPPSTPLTGWRHPEVFDEKPPERRAQVAAAERRAPVADAGGRRVRDLG
FT                 MSTRGAPSQPQPSLQTGGAQGGLADALAQALVTALQSQNQTTERFVARQSQ
FT                 GSTLPIFSGNPLDWPIFVHHYGQSTRDCGFSAAQNMGRLERALKGEARRHV
FT                 RALMIVPNNADAVMERLEQRFGRPEYIVQALVEIARKTPTPKMDKLSSIMD
FT                 YAGAINNLVTTIETLEIPAYLDNPQLLQELVDKLPDGMKLQWGMKSLRIRQ
FT                 PNLQDLANWIDKIAEAASKVTVPKLNLRDKKEENVYAAAESREGTSSPQKA
FT                 CPVCQKEGHAIWSCDEFKAMDLDKKRSLVQKKNLCFRCLKTGHSVKACRSK
FT                 WTCRVDGCSRRHHTLLHGDAPKSKDKESADKPVDVNATVNTTTGTGAILRI
FT                 ICVKLRGPGGEATVNALLDEGSTVTLMCGQVAEKLGLRGPVDPLRIKWTDG
FT                 TLQNETSSRKVSCWISPLEENTKFKLKGIRTVSNLKLPAQRTDLDKIAKMW
FT                 SHLQEVKMKYLPGKQPLILIGQPHIHLTVAREIRENKMSEPLLTKTLLGWV
FT                 LHGPVTGGGAAGEHATLSCVHETDDDIIHNLVKESFALDSIGVSPVVNARS
FT                 RDDIAAEKKMEAVTRRVGDRWETGLLWRKEPVVLPPSYDVAYRRFLGIKRK
FT                 LAKCPELKEEYTAKIQHHLSSGYARKLSRDEVCVQSNVQWYLPHFDTTHPN
FT                 KPRKIRIVFDAASRANGVSLNDFLLTGPDLLNSLPGILLKFRQRRVAFSGD
FT                 IAEMFHQIRIRKEDCPAQRFLFQEEEAEKPEVFQLEVMMFGAVCSPYCAQY
FT                 IRNRNAKEFEEEFPAAAAAIVHRHYMDDYLDSMDNEEEAIELAKQVAEVHR
FT                 RGGFSIGKWISNSPRFLEALGADTGQVTKSLSEWSDIPTERALGLHWIPGE
FT                 DSFTFRVNLERAGEGIATGREIPTKRNVLRLVMLVWDPLGFLGHYLVKARI
FT                 LLQEIWKTKIGWDDEVPSSIFQRWKSWVMDLTKLPAVRIPRCYSSQASKCG
FT                 SNNQLHIFADSSEKAGCCVAYLRVQDEEGNVEVAFVMSKCKVAPVKPVSIP
FT                 RLELIAALMASRLGKWIQSQLDLQIHDVVYWTDSMTVLKWIRSEARRFQTF
FT                 VAARVGEIQENSDVQQWRWVPTKENPADDGTRDGKCDLGADSRWWHGPGFL
FT                 KFPHDEWPRENPGKIEDLEELEIRKEFVAVHVELPKFQLPEVSRFSSFIRL
FT                 VRSTAYVLKFLEWVRSKKMLESSLLPIRNAEIILIRRSQWESYPEEMQTLT
FT                 DGREIVKSSPLYQLSPVLDHDGVLRMRSRLTGADTEDLRMPLILHPKNQLT
FT                 VLLIQYYHRKCLHQGEDTVRNEMRQRYWIPHLRSAIRKVVRECTLCKLKKA
FT                 KALPPMMGGIPDYRIQPQPRPFTIVGMDYFGPMEVTIGRRHEKRYGVLFTC
FT                 MNTRAVHLEIAHSLTTDSCIMAIRRMVARRGEPQQLHSDNGTNLRGADKEL
FT                 RQALKHLEQDKMKAELSVKSIDWHFIPPSSAHMGGTWERLVRSVKTALSAI
FT                 LKTRAPREEVLETVFAEAEAVVNSRPLTDVPVDPDSPEALTPFHFLIGSSS
FT                 PAQPPGVFVEKDVNLRKQWRQAQALADMFWKRWKREYIPTLQRRHKWHGQT
FT                 PPLETGDMVIVLDESLRRNHWPLGVITQVYPGEDGIVRVADVKTSTGMYRR
FT                 PVVKLGKLDLKTAGSQD"
XX
SQ   Sequence 5733 BP; 1607 A; 1322 C; 1641 G; 1163 T; 0 other;
     tatttggtcc ttcgagccgg attacccacg ctatggagga tatccacgaa ggaggggcat        60
     cggagggagg tggtccagaa gagggtcagc gccggagcag tcgtccgaac ctgggacaac       120
     gaccagattg gttcggagag cgagtagaag actttccatc aaacctgtta tccagcaccc       180
     atgtgacaag tacggggaca acaatgagga ggacaacatt tgtcgcgccg ccagggtcaa       240
     tattcaagaa gaaggcggag gacgacgccc agtcagtttc ctcagttgcc agctcaaaag       300
     tcgtggacat gctggatgac gagatcaaga agatggagag caagctcaca agcaaagtgg       360
     agcgactcag ctggctcaaa gaaatgagag agacagcgct caaagaagct caagggagcc       420
     aagctggaga cctgtcagaa gaggaggagg aggatacggg taacgcagtt cccgatcctt       480
     tgtttggcgg agcccaaagt gcaattgtcg gtagcactgc gggaaagcat tattggccaa       540
     ctcctcaaca agaagtccag ctgccgatct ggaagaggac agctgtaaca agacccaggg       600
     acccaccgcc gccgccacca tccacgccgt taacaggatg gaggcacccg gaggtgtttg       660
     atgagaagcc accggaaaga agagctcaag tagcggctgc agagagaaga gctccagtcg       720
     ctgacgcagg gggaagacga gttcgagatc ttggaatgag cacaagagga gctccttccc       780
     aaccccaacc atcactgcaa acaggagggg cacaaggagg tctagcggac gcgttggctc       840
     aggctcttgt aacggctctc cagtcacaaa accaaacgac tgagaggttt gtggcccgcc       900
     aaagccaggg aagcacttta ccaatcttct ctgggaatcc acttgactgg ccaattttcg       960
     tccatcatta tggccagtca actcgtgatt gtggattctc tgctgcccag aacatgggta      1020
     gactggagag ggcactgaag ggggaagcca gaagacatgt gcgggcactg atgatagtgc      1080
     caaacaacgc agatgcagtg atggagcgac tggagcagcg atttggaagg ccagaatata      1140
     ttgtccaggc gctggtggaa atagcgagaa aaacaccaac gccgaaaatg gacaagcttt      1200
     ccagtatcat ggactacgct ggagccataa ataatttggt gaccaccatc gagacgctgg      1260
     agattccagc gtatttagac aacccgcagc ttctccaaga actcgtggat aagctgccag      1320
     acgggatgaa gctccagtgg gggatgaagt cgttgaggat aaggcaaccg aatctccagg      1380
     atcttgccaa ttggattgac aagatcgctg aggcagcaag taaagtcacg gtcccaaagc      1440
     tgaatttgcg ggacaagaag gaggaaaatg tttacgctgc tgccgagtcc agagaaggaa      1500
     cttcatcccc acaaaaggcg tgccctgttt gtcagaagga gggtcacgca atctggagct      1560
     gtgacgagtt caaggcaatg gatttggaca agaaacgaag tcttgtccag aagaagaacc      1620
     tgtgtttccg gtgcctcaaa acgggacaca gcgtcaaggc gtgcagatct aagtggacct      1680
     gtcgtgtgga tggatgttcc agacgccacc acactctcct ccatggtgac gctcctaagt      1740
     caaaggacaa ggagtcagct gacaagcctg tggatgtgaa tgccactgtc aacacaacca      1800
     cagggaccgg agccattctt cgcataattt gcgttaaatt gaggggacct ggaggagaag      1860
     caaccgtaaa tgcattgctt gatgaaggat ccaccgtgac gctgatgtgt ggacaagtgg      1920
     cagagaagct agggctccga ggtccagtgg atcccctccg aattaagtgg acggatggta      1980
     cactccagaa cgagacaagc tccagaaaag tcagctgctg gataagtccc ttggaggaga      2040
     acacgaagtt caagctgaaa ggcatccgaa cggtgagcaa cctgaaatta cctgctcagc      2100
     gtacggactt ggacaagata gccaagatgt ggagtcacct ccaggaagta aaaatgaagt      2160
     accttcctgg aaaacagccg ctcattctaa ttggacaacc acacatccac ttgacggttg      2220
     ccagagaaat acgggagaac aagatgagtg agccgttgct gacaaaaact cttttggggt      2280
     gggtgctcca tggaccggtg actggaggag gtgctgctgg agaacatgcc acgttgtctt      2340
     gtgtgcatga gacggacgac gacattatcc ataacttggt taaggaatcc tttgcgttgg      2400
     attcaattgg agtgagcccg gtggtgaacg cccgttcgcg tgatgacatt gccgcagaaa      2460
     agaaaatgga ggcagtcaca cgtcgtgtag gggatcgctg ggagactgga cttctctgga      2520
     gaaaggagcc agtagtcttg ccaccaagtt atgatgtcgc ctaccgtaga ttcctgggaa      2580
     tcaaaagaaa attggcaaag tgtccagagc tgaaggaaga gtacaccgcc aaaatccagc      2640
     atcatctctc cagtggttat gccaggaagt tgtccaggga tgaggtgtgt gtacaaagta      2700
     acgtccagtg gtacttgcca cactttgaca ccacccatcc caacaagccg aggaagattc      2760
     gcatcgtctt tgatgcagca agcagggcaa acggagtcag tctaaacgat tttctattga      2820
     ctggcccgga cttgctcaat tcacttccgg ggattcttct caagttcaga cagagaagag      2880
     tggctttttc gggggacata gcggagatgt tccaccagat tcgcatccgg aaggaggatt      2940
     gcccagcgca gaggttcctg ttccaagaag aagaagccga gaaacctgaa gttttccagc      3000
     tcgaagtcat gatgtttggg gcagtctgct caccgtactg cgcccaatac atccggaaca      3060
     ggaacgcaaa agaatttgag gaggagtttc cagccgctgc tgccgccata gtccaccgtc      3120
     actacatgga cgattaccta gattctatgg acaatgaaga agaggcaatc gagttggcga      3180
     agcaagttgc agaagtccac agaagaggcg gattttcaat tggaaaatgg atttccaatt      3240
     ctccaagatt cctggaggcg ctgggtgcag acactggaca agtgaccaaa agtctttcgg      3300
     agtggtcaga catcccaacc gagagggcac tcggcttaca ttggattcct ggagaagact      3360
     ccttcacgtt cagagtcaat ttggaacgtg ctggagaagg aatcgccact ggaagagaaa      3420
     ttccaaccaa acgaaacgtg ttgcggttgg tgatgctggt gtgggaccct cttggattcc      3480
     ttggccatta cttagtcaag gccagaatac ttctccagga aatctggaaa acgaagatag      3540
     gatgggatga cgaggtgcct tccagcatat tccagcgatg gaagtcgtgg gtcatggatc      3600
     tgacaaaatt gccagctgtc agaatcccta ggtgctattc cagccaagca agcaaatgtg      3660
     ggagcaacaa ccagctccac attttcgcag actccagcga aaaagcagga tgttgcgtag      3720
     catacctccg tgtccaggat gaagagggga atgtggaagt agccttcgtc atgtcaaaat      3780
     gcaaggtggc accagttaaa ccagtcagca tcccacgact ggaactcatt gctgcactga      3840
     tggcctcgag acttggaaaa tggattcagt ctcagttgga cctccagata cacgatgtag      3900
     tttactggac ggactccatg acggtactca aatggatccg ctcagaggcc aggcgattcc      3960
     agacttttgt ggcagcccgt gttggagaaa tccaagagaa ttcggatgta caacagtgga      4020
     gatgggtgcc aactaaagag aatccagctg acgacggaac tcgagacgga aaatgcgacc      4080
     tgggcgcaga tagtcgctgg tggcatgggc caggattctt aaagtttcct catgatgaat      4140
     ggcccagaga aaatcctgga aagattgaag atttggagga actggaaata agaaaggagt      4200
     tcgttgctgt ccatgtagag ctgcctaagt tccagttgcc agaagtctcc aggttctcca      4260
     gtttcattcg gctggtgagg tcaacggctt acgttctcaa gtttttggag tgggtccgga      4320
     gtaagaaaat gctggagtca agtctgctac ctatcagaaa cgcagaaatt attctgatta      4380
     ggagaagcca gtgggagtca tatcccgaag agatgcagac cttgactgac ggacgagaaa      4440
     ttgtgaagtc cagcccactc taccagttgt caccagtcct ggaccatgat ggagtgctga      4500
     gaatgagaag tcgtttgacc ggtgcggata cggaggacct gagaatgcca ctgattctgc      4560
     atcccaagaa tcagttgact gttctgttga ttcagtacta tcacagaaaa tgtctgcacc      4620
     agggggaaga cacggtccgg aacgagatga ggcagcggta ctggattcct catttaagga      4680
     gcgccattcg gaaggtcgtt cgggagtgca cattgtgcaa gctgaagaag gcgaaggcgc      4740
     tgccaccaat gatgggagga attcctgact accgtatcca gccgcagcca agaccattca      4800
     caatagtcgg gatggactat tttgggccga tggaggtgac cattgggcga aggcacgaga      4860
     agcggtacgg cgttctgttc acatgtatga acaccagggc ggtccacctg gagatagcgc      4920
     acagccttac aacggacagt tgtattatgg caataaggag gatggtcgct cggcgtggag      4980
     agccacaaca actccacagc gacaacggta ccaacctgag gggcgcagac aaagagctga      5040
     ggcaggcatt aaaacatctg gagcaagata agatgaaggc cgagctatcc gtcaagtcta      5100
     ttgactggca cttcatccct ccatcctcag ctcatatggg tggaacctgg gagcgactcg      5160
     tgagaagtgt caagaccgcc ttgtccgcaa ttttaaagac aagagccccg agggaagaag      5220
     tactggaaac agtattcgct gaagcagaag cggtcgttaa tagccgcccg ctgacggatg      5280
     ttcctgtgga tccggattct ccagaggccc tcacaccctt ccacttcctg attggaagct      5340
     caagtccagc tcagccgcca ggtgttttcg tagaaaaaga cgttaatcta cggaagcaat      5400
     ggaggcaagc acaagcgtta gcggacatgt tttggaagcg gtggaagcgc gagtacatcc      5460
     caactctcca gcggaggcat aagtggcatg gacaaactcc gccattggag actggagaca      5520
     tggtcattgt cctggacgag agcctgagga ggaatcattg gccactgggt gtcattaccc      5580
     aagtctatcc tggagaagat ggcattgttc gagtggcgga tgtcaagacc tccactggaa      5640
     tgtaccggag accagttgtc aagctcggga aacttgacct gaagaccgca ggaagccaag      5700
     attaggattt actgtgtaaa tcagggggaa gta                                   5733
//
ID   BEL-10_SiCu-LTR repbase;    DNA;    INV; 785 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-785
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5007-5007 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 785 BP; 220 A; 127 C; 143 G; 294 T; 1 other;
     tgttcctgcg gatgcttata taaaggaatt taaataatat tttcttttgc tatttttgta        60
     aatttgttca atttgaattt agtatcgaat actatttgta aattaaggaa tttttctttg       120
     ttgctttctt ttctccgtaa ttctgttaaa tgttaatatt tccaagaaag caaataattg       180
     ttaatttcct gtktttgtac atattatgta gaaactactt ccggaggaaa gctcattttg       240
     ttaatttatc ttgattcgtg aaatttcatg aagaagttcg agctaatttt ctttgttttg       300
     ttaatttgta tgttctattt ttagaacgaa tgtcaatctt gctgacattc gccccggaag       360
     tagctcaggt ataaaaggcg acgtcaaatt gtaaaagtta tcttattaag tcttgggaag       420
     tcgtccaagc acaaacagcc atacggtctt ctctggaaac agtctagacc aggaagtaac       480
     ttgtaaagta accacaagta acttattagt aaaataaagt cagagttttc ctttccttaa       540
     attatcttgg aaccattatt ggggctttat ttttggcata cgccttccta gaaatccttc       600
     cccagtgggg atatttctgg aagattcatt tgagttcctg gaattagtca tcttgcttat       660
     ttataggcgg aaatattcca gacgagtggt acctttgtac ctggtccttc gcatgtttta       720
     aagcattgag accgtgttcc cgatccattt tggaaccttt tgaaatcgtc gaaagggcgg       780
     gaaca                                                                   785
//
ID   BEL-10_SpEx-I repbase;    DNA;    INV; 5825 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5825
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6948-6948 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           627..5786
FT                 /product="BEL-10_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSDAKVKELIKRRGSFKAKLTHFSNFLKFLPDTKLDK
FT                 FQTAELQSRLSLMQMLYKEYDVLQTELEMLSENADDMYAEREQFEAQFHAQ
FT                 VARAQTILVPVRASSPALEPAISTEGLQHRGPDCRHDFVRLPKIDLPHFDG
FT                 DYQRWLEFRDTYISLIHVNSSIQNINKFHYLRAALKGSASLIIKSIDFKAD
FT                 NYDLAWQLLIERYDNEKILINNHVQALFNFEHIKQESCSQLRNMIDVTNKN
FT                 IRALLTLGQSCEHGSLGETLTIYIMSEKLDRATRREWEEYKNNLDSFPTLK
FT                 EYIKFLSNRADFLDSLNYNRNTTYSNNANTKYTNDNNKSKIYHTITKPKPN
FT                 YNKDDIKCPACSQNHFLFSCQTFRNLDIESRLQKAVENNVCLNCLRPGHTA
FT                 KRCSLSHCKYCKVKHNTLLHKDSSTEQQARHNVALSTNVALPYSDTNNFTI
FT                 LLSTALAKVSDINGELHTVRLLLDNGSTSNFVTRELCEKLGLVTYSTNSTV
FT                 SGINGQVSSTSESCNIILQSCYGSYQARVSCYILPKITQSLPSSYVDKRYI
FT                 TIPPGIQLADPTYNIPAAIDILVGAEVFWDVLGSNTINLGNKQPKLQSSKL
FT                 GWLISGYVSQLRVRSQPSVCHFLSREESDQLTRFWELDTVSSASCLSAEEQ
FT                 ACEKLFSETTRRDTNGQFVVTIPLKDSPECLGDSYAMAKRRFLSLERRFER
FT                 DSTFKSRYLAFVQEYIDLHHMTEYSKPIHSETHYFLPHHGVVRESSTTTKL
FT                 RVVFDASASSTSGKSFNDIQMVGPTVQEDLLSILLRYRQHKYVITGDIEKM
FT                 YRAILVEPSQRPLQQIVFRSNSSDPLKTYALNTVTYGTASAPYLATKCLVS
FT                 LADQCSNLEVSQSIRRDFYVDDFLSGADSIEAVIRVCRGVVNALESAGFHL
FT                 RKWQSNNPEILKSVTNINTYNSDKKLILSDTCHKTLGLYWNCNTDKLFYLI
FT                 DVKPTTKITKRNILSLISQVFDPLGLVGPCIVQVKLILQQLWILKCNWDDE
FT                 VPPEIKSQFLEFIQSLSALNSLYIPRWVSCNHASSLELHTFTDASERAYGA
FT                 CIYVRTITVDGAVCVRLLASKNRVAPIKPTTIPRLELCGALLGTRLFLKVR
FT                 KSLTLKFNYCYFWCDSTIVLGWLKTLPSRLDQFVRNRVSEIQEATKGQTWS
FT                 YVPSRSNPADLASRGVKADCISSSTLWWSGPDFINHSEIQFPTLQNENTHL
FT                 LPELTLHTTADINNITNVNLISSLIHNKSSFTLLIRVVAYIKRFINNCKKP
FT                 NNKQSSYLTVSELKSSQNLLLHISQQEMFPEEYTCLKSNQPLHKKNRLISL
FT                 SPFIDSDNLIRVGGRLNNSHYSYDVKHPILLCSKHHITKLIFEKEHILLFH
FT                 AGPQLLLAHIRLSYWPLAGRNLAKHIVRKCIRCTRIKAQPVQIVMGDLPQD
FT                 RTHLEYPFLKTGLDYAGPVLIANRRGRGCQLLKSYICVFVCFAVRAVHLEL
FT                 VSDLTKEAFLAAFSRFISRRGKPQRVYSDNGTTFVGAFNELSRFFEVSSKD
FT                 IESDLANKGIEFKFIPAYSPHFGGIWEAAVKSTKHLLRRVMSLTHLTYEEL
FT                 STCLIQIEAILNSRPLTPLSSDPSDLSYLSPSHFLIGRPLTSVPRPLLTDA
FT                 NIQRLQRFDRVEKLRQHFWQRFSHEYVSLLQQKTKWQTAGQDLKTGTMVLV
FT                 RDANLPPLLWLLGRVVAVKTGSDGHCRVADVRTKKGIITRAYNNICPLPVS
FT                 "
XX
SQ   Sequence 5825 BP; 1741 A; 1264 C; 1078 G; 1742 T; 0 other;
     ttggtccttc gaattaagaa agtcgccgtc ttattaagct gcgcacgcct tctgtggact        60
     ttggactggc cgtccgaacg cgtggtcgct tgcaacgtgg aagacacatc aagaccagtc       120
     tacccagaga gtcaatattc tgagtgagtc cgttccatta tccttatttc ctgtgctttt       180
     atctttttcc attccaagga tttaattagt gctatacgga tcgaacatgg attgatctct       240
     tcatagttat agcttattta gtacatactt agctaaagca tatgtaatta ataatcattc       300
     atcatcacaa atcaatattt actatttaat ttaaaaatca tattgcatcg aacaatcttc       360
     gctataaagt acctatggac atttcttttg ttcgcttatc gcacgcttga acatctggtt       420
     gcttaacctt gaaaaacaac tttaatactt tatacaaact ggttttattg attccttatt       480
     agctaaatca gcttttattt atcttcgtca actattgacg tattctagta caggtacttg       540
     taacttgctt acgttcttat ttctttgcct tttttttgta attccaatct tttgcttcaa       600
     cttatacagt tttcttgtta ctcagtatgt ccgatgcaaa ggttaaggag ctgataaaga       660
     ggcgtggcag cttcaaagca aagcttacac attttagtaa ctttttaaaa tttctgcctg       720
     acacgaaatt agacaaattt caaacagcag agctacaaag ccgtcttagc ctaatgcaaa       780
     tgctttataa ggagtatgac gtattacaga ccgagctgga aatgttgtcg gagaacgcgg       840
     acgacatgta tgccgaaagg gagcagtttg aggcgcaatt ccatgcgcag gtggcgcgcg       900
     cgcaaaccat tctggttcct gtgcgtgcgt cttcgcctgc actcgagcct gctatttcca       960
     ctgaaggtct tcagcaccgc ggacctgact gcaggcatga ctttgttcgt ctgcctaaga      1020
     tagacttgcc tcatttcgac ggggactatc agcgctggct cgaatttaga gatacgtata      1080
     tttccctaat tcatgttaat tctagcatac agaatataaa caaattccac tatttacgtg      1140
     cagccctaaa aggtagtgca tctttaatta taaaaagcat tgattttaaa gctgataatt      1200
     acgatttggc atggcaattg ttaatcgaaa gatacgataa tgaaaaaata cttataaata      1260
     atcacgtgca ggcattattt aattttgaac atataaaaca agaatcttgt agccaattac      1320
     gtaatatgat tgatgtaact aataaaaaca tacgtgcttt gttaacatta ggacagtctt      1380
     gcgagcatgg gagtcttgga gaaaccctta caatttatat tatgtctgaa aaacttgaca      1440
     gagccacacg cagggaatgg gaggaatata aaaataattt agattcattt ccaactttaa      1500
     aggaatatat taaattttta agtaacagag ctgacttttt ggattcctta aattacaaca      1560
     gaaacacaac atattcaaat aatgcaaaca ctaaatatac taacgacaac aataaatcaa      1620
     aaatatatca tacaataaca aaacctaaac ctaattataa taaggacgac attaaatgtc      1680
     cagcatgctc tcaaaatcac tttttattta gctgtcaaac attcagaaac ttagatattg      1740
     aatcaagatt acaaaaagca gtagaaaaca atgtttgttt aaattgcctt cgacctggtc      1800
     atacagcgaa gcgttgcagt ttatcacatt gcaaatattg caaagtgaaa cacaataccc      1860
     ttttacacaa agattcatct acagaacaac aggcaagaca caatgttgca ttatcaacta      1920
     atgttgcttt accctactca gatactaaca actttacaat tttactatcc acagccttgg      1980
     caaaggtgtc cgatatcaat ggtgaacttc atactgtcag gctcctgttg gacaacggca      2040
     gcacctcaaa cttcgtgacc cgagagctct gtgagaaact tggcctggta acgtacagca      2100
     ctaactccac tgtctcaggt attaacggtc aagtttctag tacttcagaa agctgcaata      2160
     ttattttgca atcttgttac ggtagttatc aggcgagggt aagctgttac attctaccaa      2220
     agataacgca atcgctgcca agttcttacg tcgataaaag atatattacc ataccgccag      2280
     gcattcaact agcagatccc acttataata ttcccgctgc tattgacatc ctcgttggcg      2340
     ctgaggtatt ttgggacgtc ctaggttcca atactataaa tttaggcaat aaacaaccta      2400
     aattacaatc ttccaaactt ggttggctta tttcgggcta cgttagtcag cttcgtgttc      2460
     gttcacaacc atctgtttgc cacttccttt cacgtgagga gtctgaccag ctgactcgct      2520
     tctgggaact tgatactgtg tcgtctgcta gctgcctctc tgcagaagaa caagcttgtg      2580
     aaaagctctt ttctgaaacc acacgtaggg ataccaatgg ccaattcgtg gtcactatac      2640
     ctttaaagga ctcgcccgag tgcttaggtg actcttatgc gatggccaag cgtcgtttcc      2700
     tttccctaga gcgtagattc gagcgcgact cgacttttaa aagcagatac ttagcattcg      2760
     tgcaagaata tatagatctt catcatatga cagaatactc aaaaccaatt cattcagaaa      2820
     ctcattactt tttgcctcat cacggggtcg tacgggagtc aagtactacg acaaagcttc      2880
     gtgtcgtctt tgatgcttct gcctccagta cctcgggcaa gtcttttaat gatattcaga      2940
     tggtgggtcc aaccgtacag gaagatctac tatccatact cttaagatac aggcaacaca      3000
     agtatgtcat cacgggcgac atagaaaaaa tgtatcgagc tattttagtc gaaccatctc      3060
     aacgcccgtt gcaacaaatt gttttcagat caaattcatc agacccttta aaaacgtatg      3120
     cacttaatac cgtgacgtat ggtacagcat cagccccata cttggctact aaatgtcttg      3180
     tgtcactcgc agatcaatgt tcaaatctag aagttagtca gtccatcaga cgcgattttt      3240
     atgtcgatga ttttcttagt ggcgcggatt caatcgaagc agttatacgt gtatgtcgag      3300
     gagtggtcaa tgctcttgaa tccgctggct ttcatcttag gaaatggcaa tcaaataatc      3360
     ccgaaatatt aaaatccgtc acaaacatca acacatacaa cagtgataaa aaattaatct      3420
     taagtgatac ttgccacaag acacttgggt tatattggaa ctgcaataca gacaaattat      3480
     tttatctgat cgatgtaaaa ccaactacaa aaatcacaaa gcgtaatatt ttatctttaa      3540
     tcagccaagt gtttgatcct ctaggtctag ttggaccatg catagtccag gtcaaactta      3600
     tattacagca gctttggata cttaaatgta actgggatga tgaagttcct ccagaaataa      3660
     aatcacaatt ccttgaattt atacaatcac tttcagcact taactctctt tacattcctc      3720
     gctgggtgtc gtgtaatcat gcttcatcat tagaattaca tacgttcaca gacgcctccg      3780
     agcgtgctta tggtgcatgt atctacgtaa gaacgataac agtcgatgga gcagtttgcg      3840
     ttcgcctgtt agcttcaaag aaccgggttg ccccgataaa acccacaact atacccagat      3900
     tagagttgtg tggtgctttg ttgggtacaa gactttttct gaaggtacgt aaatcactca      3960
     ctctaaaatt taattattgt tatttttggt gcgattcaac aatcgttcta ggatggctga      4020
     aaacattgcc aagtcgcctc gaccaatttg ttcgcaatag agtgagtgaa atccaagaag      4080
     ctacgaaagg ccagacatgg agttatgtgc cttctaggag caatcccgcc gacctcgctt      4140
     ctcggggggt gaaggctgat tgcatcagct cgtccactct ctggtggtcg ggtcctgatt      4200
     ttattaatca tagtgagatt caatttccta ctttacaaaa tgaaaatacg catttattac      4260
     cagaattaac tttacacaca acagctgaca taaataacat aactaacgtg aacctaattt      4320
     ccagtttaat tcataacaaa tcttcattta cgttattgat cagagtagta gcctatataa      4380
     aaagatttat aaataattgt aaaaaaccga ataataaaca atcatcttac ctaacagtat      4440
     cagagttgaa atcatcacaa aatcttttat tacatatttc ccagcaggaa atgttccctg      4500
     aggaatatac gtgtcttaaa tctaatcagc ccttacataa aaagaatcga ttaataagtc      4560
     tttctccatt tattgattca gacaatctaa tacgcgttgg tggacgtctt aacaattctc      4620
     attacagcta cgatgttaaa catcccatac tattatgtag caaacatcat ataacaaaac      4680
     ttatatttga aaaagaacat attttactgt ttcatgcagg gcctcaatta ctgttagctc      4740
     acataagatt gtcttactgg cctctggcag gcaggaactt agccaaacat atagtgcgta      4800
     agtgcattcg ttgcactcga atcaaggctc agcctgtaca gattgtcatg ggcgacctgc      4860
     cacaggatag aacccatctc gagtatcctt tcttaaagac agggcttgac tatgccgggc      4920
     cagtgctgat agccaatcgt aggggtagag gatgtcaatt acttaaatct tatatttgtg      4980
     tgtttgtgtg ttttgcagtc agagccgttc acttggagct ggtttcggac ctgaccaagg      5040
     aggctttcct tgcggccttc agccgattca ttagccgtcg tgggaagcct cagcgcgtgt      5100
     actccgacaa cggcacaaca tttgtgggag ctttcaatga gctgtcacgt ttctttgagg      5160
     tttcatccaa agatatagag tcagatcttg caaacaaagg catagaattc aaatttatac      5220
     cagcctacag cccccatttc ggtggcattt gggaggcagc agtaaaatcc acaaaacatt      5280
     tacttcgtag agtcatgagc ttaactcacc ttacttatga ggagctctct acttgtttga      5340
     ttcagataga ggctatatta aattccagac ccttaactcc tttatcctct gatccttctg      5400
     atctatctta tctttctcct tcacatttcc ttatcggacg cccactcact tcagtccctc      5460
     gtccattatt gaccgacgcg aacatccagc gactgcagcg tttcgatcgc gttgagaaac      5520
     tgcggcaaca tttttggcag cgcttttctc atgagtatgt gtctctcctg cagcagaaaa      5580
     ccaaatggca gacagctggc caagacctga agactggcac catggtttta gtgagggacg      5640
     ccaatctccc tcctcttctc tggctgctgg gcagagtagt cgctgttaaa actggctcgg      5700
     acggacattg tcgagtcgct gacgtccgca cgaagaaagg catcatcaca cgtgcctaca      5760
     acaacatttg tcctctcccg gtgtcgtaac atcaacttga agccttctct tcaacccggg      5820
     gagta                                                                  5825
//
ID   BEL-10_SpEx-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-228
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6918-6918 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 228 BP; 57 A; 70 C; 43 G; 58 T; 0 other;
     tgttcctgac gtcacatcgg gctcaccatc atacgtcgtg gtccgcgacc gctgcgatcg        60
     gcggtcattc attcactcgc tcgcttgctc gcccgacact acaccgtgcg cacataacgg       120
     ctgactacaa tcagtaccta tatattaaat acagtctatt tcgcatatat cgaagtcttt       180
     tattagtcaa gaccaccagc aacacacctg gagcttggca ttcaaaca                    228
//
ID   BEL-10_TrNi-I repbase;    DNA;    INV; 5964 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5964
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1057-1057 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..5729
FT                 /product="BEL-10_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEAFSDLQEDIRAIMLKAKSNFKKSPKERLSVAYVET
FT                 RLDNLEQQWRLFSDTHTKIISQVKRSDLYSSNYHKNAIYDDVEELYVDYKT
FT                 ELKEMLTKLSSNNQSVVVSSGNSGTRFKLPEIKIPMFSGKYTEWQTFRDLF
FT                 LGLVHENKALDDAQRFYYLRGHLTGEAEQLLRNIKMSSDCYEIAWKKLDDM
FT                 YNNKRFLANGILKRMLSQKNLVSESAYEIKKIISTTSDCLEAIKNLGVDVS
FT                 SWDLIVIHIISSKLDKETRRAWELKVASDSSDELPTFEEFSQYLYSRFRGL
FT                 EQLDKEIIGNNKQPRHPQPKGTHSFHVVKEKGLLSCTFCSADHKINYCPKF
FT                 RKESNEARRMFALENNLCFVCLLNNHSAKNCKNTLKCQVCRHRHHSLLHPS
FT                 GASGSNIGEDGSTIHEELSSVASTSAKDEIKNCNAVVTAQAEGSSKPMVSC
FT                 LSTGTSRKTVLLTTALIKAESKDGSYRVVRALLDQGSQGSFVTESTVQYLG
FT                 LDKTPSKQVVIGVGGDKSATAKSSVTLTLRSRIDPSVVIKVNAFVLKSVST
FT                 VLPAAKVARVEWVDLTDDDLADPEYYRPNKIDVLLGAEVYSQVIQEGIKKN
FT                 ITGSLLAQNTKLGWILSGTFDVDQTINSSHITVMHSSLVEDDMLKKIYELE
FT                 AEPPRKKMLTEEENKCVKLFAATTERDSNGRYIVRLPLRNVDPACAVGETR
FT                 SIAEKRFKGLEVKFKKNEKLKEEYGKVIKEYLQLNHMTKVPEVDYNNEKAI
FT                 YLPHHAVVREDKETSKVRVVFDASCKGSKGMSLNDNMLVGPTLQADLRHTI
FT                 MRWRTHRICLVADIVKMYRQVLVHKKDTILQRILWRDDPEKEINKYQLKTV
FT                 TFVTASTPFLAVRGLQQLSYDECCAEPGMSKIILEDFYMDDVMTGAENIED
FT                 CFKIYTKLKEILIKGGFPLQKWKSNSQKLLNKIMDRKGTTEELKIKIDSIT
FT                 KILGLTWNSNEDVFQYTVEFRALAAPVTKRKVISEISRLFEPLGWLAPSIV
FT                 QAKIFIQKLWLAGKEWDQAIPHKLLYEWLTYHNSLTSLMNIRIPRWMHHED
FT                 KNTITELHGFSDASKMAYAAVVYLRVVDKEGNVHISLVTAKTKVAPIKQVS
FT                 IPRLELCGAVLLAKLMAEVGEVLGVQKLDWHAWTDSEVVLAWLSSHPSRWK
FT                 TFVANRVSDILSILDTHHWSHVSTKHNPADCASRGVSSVELQSMTIWWRGP
FT                 DFLRQQVLEYKKXKHLMTRLEEVKVNSCTLDVTFWNRFSTLQRMIRVVAYI
FT                 RRFLKVNRQSMRSNHLTKQELDEALEVCIRKSQEEGLSNTLEELRKNEMCE
FT                 KGSLKSLNIFLDSKGIIRVGGRLEMAQLNYDRIHPILIPKESFLTNLLIAE
FT                 AHAKTMHGGPQMMLTYLRAKYWILGVKLLVKKFVRACVKCIRYNSKVRTQL
FT                 MGQLPSARVTPSKPFLCSGVDYAGPINIRVSKGRGNKSYKGYIALFVCMST
FT                 RAVHLEAVSELSTKGFLAAFKRFVARRGRCAELYSDNATNFVGAARELANN
FT                 GTECHFIPPHAPNFGGLWEAGIKSTKHHLKRVIGNSTLTYEEMATVLAQIE
FT                 ACLNSRPLSYVEDQDKMSVLTPGHFLLGESPVVPPDASYESTTNITNLXRW
FT                 QLCQKMMRDFWRRWSHDYLHQFLQRYRWSYKTPEPSLGSIVLVKEDNMPPG
FT                 KWLLGRIVQKHPGTDGITRVVTIRTQSATMKRPTSKLCILPVVV"
XX
SQ   Sequence 5964 BP; 1910 A; 988 C; 1406 G; 1657 T; 3 other;
     tggtccttcg agccggattg gtcgcgagtg ttttttggta gtctccggtg gtggaagaga        60
     ctaccacccc tagcgtcatt actggacagt ggattgctgt ccagagcagc ctcttcagtg       120
     gaccccagga gagagggccc aggagctgaa ggtggaaccg gtgcagcagc cgggagtcag       180
     gcgtggtgca gccgactcgt gagcagcagc agccggagga aggcgcaagg gaggtgcagt       240
     ggcagtgcaa caagcagcgg gcgcggtgcc ggcagggggc gccacttata tggtggtgta       300
     ttgtgatagt gaataatatt ggtttgaagt aaagccgtga gtactttaaa ttattcatta       360
     tcgcgaagaa gaagtcaaca ataaatagaa aattgtaact tggaaatttt gaacttgtaa       420
     tatcgcagtt agcagtaatt caggacttgt aatagtttta agttagaagt agttcgacgg       480
     ggaacttatg cccgatttcg gtctgaattc taagacttgt aaaatttcaa aataatttta       540
     atttgttttc ttgtatttca aataattgtt tacatttttt acttaataaa atggaagctt       600
     ttagcgatct gcaagaagac attagagcta taatgttaaa agctaagtct aattttaaga       660
     aatcgccaaa agagcgatta tcggttgctt atgtagagac taggcttgat aacttagagc       720
     aacaatggag attattctcg gacactcata ctaaaattat aagtcaagtc aaaagatcag       780
     atttgtatag ttcgaactac cacaagaatg caatatatga cgatgtagaa gagttgtatg       840
     tagattataa gactgaatta aaagagatgt taactaaatt aagttcgaat aaccaaagtg       900
     ttgtggtatc aagtggaaat tcaggtacac gatttaagtt gcctgaaata aaaatcccga       960
     tgttctctgg gaaatatacg gagtggcaga cttttaggga cttgttttta gggcttgtac      1020
     atgaaaacaa ggccctagat gatgcccaaa ggttttatta tcttcgagga catctgacag      1080
     gagaggctga gcagctattg cgaaatatta aaatgtcatc tgattgttat gaaattgcct      1140
     ggaaaaagtt ggacgatatg tacaataata aacggttttt agccaatggc attttaaaac      1200
     gtatgcttag ccaaaagaat ttagtttcgg aatcggctta tgaaataaaa aaaataataa      1260
     gtactacgtc agactgttta gaggcaataa aaaatctagg tgtggatgtg tcttcatggg      1320
     atctgattgt tattcatata attagttcaa aattagataa ggagactaga agggcgtggg      1380
     aattgaaggt ggcctcggac tcaagtgacg agctaccaac atttgaagaa ttttcacaat      1440
     atttgtatag tcgctttagg ggtttggaac agttagacaa ggaaattatt gggaataata      1500
     aacagccaag acatccacaa ccaaaaggga cgcattcatt tcatgtagta aaagaaaaag      1560
     gcctgttatc atgtacattt tgctcagctg atcataagat taattattgt ccgaaatttc      1620
     gtaaagaatc gaatgaagcg cgacgtatgt ttgcgctaga aaataacttg tgtttcgttt      1680
     gtttactcaa caaccactct gcaaaaaatt gtaaaaacac tctcaagtgc caggtgtgta      1740
     gacaccgcca ccattctttg ctgcacccaa gcggtgcatc tgggtccaat attggtgaag      1800
     atgggagtac gattcacgag gaattatcat cagtcgcttc aacgtcggcg aaggatgaga      1860
     ttaaaaattg taatgctgta gtgaccgcgc aagcggaggg atcgagcaag ccaatggtat      1920
     cgtgtctttc gacagggact agccgtaaaa cggttttatt aactaccgct ttgatcaaag      1980
     cggagtcgaa agacggttca tatagggtgg ttagggcttt actcgatcaa ggatcacaag      2040
     gttcgtttgt gacagaatct acagtccagt atttgggatt agataaaaca ccttcaaagc      2100
     aagttgtgat aggtgtaggt ggggacaaga gtgctacggc caagtccagt gtgactctca      2160
     cattgaggtc tagaatagac cccagtgtcg tcattaaggt taatgcattc gtcctgaagt      2220
     cggtctcaac tgttctccca gctgcaaagg tagccagggt agaatgggta gatttgactg      2280
     atgatgactt ggctgatcca gaatattaca ggcctaataa aattgatgtt ttattaggtg      2340
     ctgaagtcta cagccaggtc atccaggagg gtattaaaaa gaatataact gggtcattat      2400
     tagctcagaa tactaaatta gggtggatat tgtcaggtac ctttgacgtc gaccagacaa      2460
     taaattcatc acacattacc gttatgcatt caagtcttgt agaagatgac atgcttaaaa      2520
     aaatatatga actggaagca gaacctccta gaaagaaaat gcttacggag gaagaaaata      2580
     aatgcgtgaa gttatttgca gctacgacgg aacgcgacag taatggtaga tacattgtaa      2640
     gactaccatt gcgtaatgtg gacccggctt gtgcggttgg tgagaccagg agcattgctg      2700
     aaaaaagatt caaaggtttg gaagtaaaat ttaagaaaaa cgaaaaactt aaagaagaat      2760
     atgggaaagt aataaaagag tatttacagt taaatcacat gacaaaagta ccagaagtag      2820
     attataataa tgaaaaagca atctacttac ctcaccacgc cgttgtccgg gaggataaag      2880
     aaacatcaaa ggttcgcgtc gtattcgatg cctcctgcaa aggatcgaag ggaatgtcac      2940
     tgaatgacaa catgttagtc ggccctactt tgcaggcaga tcttcgccat acgattatgc      3000
     gatggagaac acatcgcata tgccttgtag cagacattgt gaaaatgtat cgtcaagttc      3060
     tggtacacaa gaaggataca atactacaac gtattctctg gcgagatgat cctgaaaaag      3120
     aaattaataa atatcaattg aaaactgtta cctttgttac tgcgtcgact ccatttctgg      3180
     ctgtacgggg tcttcaacag ctttcttacg atgaatgttg tgctgaacct ggaatgtcta      3240
     agataatttt agaagacttc tacatggatg atgtaatgac aggagctgaa aatatagaag      3300
     actgtttcaa gatatacact aaactaaagg aaatattaat aaaaggaggt tttccattac      3360
     aaaaatggaa gagtaacagt caaaaactat taaataaaat tatggataga aaaggaacca      3420
     cagaggaatt aaaaataaaa atagacagta ttaccaaaat cttgggactt acctggaact      3480
     cgaacgaaga tgtctttcag tacactgtgg aatttcgagc gctggcagca cctgtaacaa      3540
     aaagaaaggt tatttcggag atttcgagat tgtttgaacc cttaggttgg ttggcaccta      3600
     gtatcgttca agctaagata tttattcaaa aattgtggct agcaggaaag gaatgggatc      3660
     aagcaattcc acataagtta ttatatgaat ggttgactta ccataatagt ttaacttcct      3720
     tgatgaatat taggattccg cgatggatgc accatgaaga taaaaacacg attaccgaat      3780
     tacatggttt ttctgatgcc tcaaaaatgg cgtacgccgc ggtggtttat ttgagggttg      3840
     tggacaaaga agggaatgtt catatttctt tagtaacagc aaaaacgaag gttgcaccca      3900
     ttaaacaagt gtccattcct cgactagaac tttgtggggc tgttcttcta gccaaattga      3960
     tggctgaagt aggagaagta ttgggtgtcc aaaagcttga ctggcacgca tggacagaca      4020
     gtgaagtagt gctagcttgg ctcagcagcc accctagtcg ttggaaaacg ttcgtggcta      4080
     accgtgtttc tgatatttta agtattttgg acacacatca ctggtctcat gtgtcaacaa      4140
     aacacaatcc cgcagattgt gcatctcgcg gcgtttcatc kgttgaactc cagtccatga      4200
     cgatatggtg gcgaggcccg gatttcttaa gacagcaagt attagagtat aaaaaascaa      4260
     aacacctaat gactcgatta gaagaagtta aggttaattc gtgtacgttg gatgtgactt      4320
     tttggaatcg attttcaaca ctgcaaagaa tgattcgtgt agtagcttat attcgtaggt      4380
     ttttaaaggt aaacagacag agtatgaggt caaatcatct gactaaacaa gaattagatg      4440
     aagcattaga agtctgtata aggaaaagtc aagaagaagg attaagtaac acattagaag      4500
     agttaagaaa gaatgagatg tgtgagaaag gaagtcttaa gtcgttaaac atatttcttg      4560
     attcgaaagg aattataaga gttggaggac ggttggaaat ggcgcaactg aattatgacc      4620
     ggattcatcc cattttgata ccgaaggagt cttttttgac gaatctttta attgccgagg      4680
     cgcatgcgaa aactatgcat ggtggacctc aaatgatgtt gacgtatttg cgagccaagt      4740
     attggatatt aggagttaaa ctattggtta aaaaatttgt aagggcttgt gttaaatgta      4800
     ttcgatataa ctcaaaggtt agaacgcaac taatgggaca gttgccttca gcacgagtca      4860
     cccctagcaa accgtttctc tgcagcggag tagactacgc tggacctata aacataagag      4920
     tatccaaagg tcgaggtaat aaatcctaca aggggtacat cgccttattt gtgtgcatgt      4980
     ccactagagc ggtgcatttg gaggcagtta gtgagctaag cacaaagggt ttcctagctg      5040
     cgttcaagag atttgtggca agacgtggca ggtgcgctga actatacagt gataatgcca      5100
     caaattttgt gggagcagca cgtgagcttg cgaataatgg tacggagtgt cactttattc      5160
     ctcctcatgc acctaatttc ggtggcttat gggaggcagg tataaagtcc actaagcatc      5220
     atctaaaaag agtcattggc aattctacgt taacgtacga ggaaatggca acggtgttgg      5280
     ctcaaattga ggcatgcctc aattcaaggc cattgtccta cgtagaagat caggacaaga      5340
     tgtcagtttt gacacctggt catttcttgt taggggagtc accagttgtg ccgccagatg      5400
     caagttacga gagcacaacg aatattacca atttgaakcg gtggcaactc tgtcagaaga      5460
     tgatgcggga cttctggaga aggtggtcgc acgactatct tcaccaattc ttacagcgat      5520
     atagatggtc ttacaaaact ccggaaccct ctttgggtag tatagtatta gtaaaggagg      5580
     ataatatgcc tccaggaaag tggttgttag gtaggattgt tcaaaaacat cctgggacag      5640
     acggtattac tcgtgtagtc acaatccgta ctcaatcagc aaccatgaag agacctacat      5700
     ctaaactatg cattttgccg gtagtagttt agttataagc gctgataaat gtcataaagt      5760
     gccattttta gttattttat ttagcatgga ttaagtttat ttgctgtcaa ggaattggaa      5820
     gtttgagtaa aacttattta ttttttgttg tttatggaaa tataatttgt ttgttagtta      5880
     ttctacatca gcttcaatta aaatttattg agcacggtgg gcggtgtaga aggacattga      5940
     gcaatatgtc cttggtgggc ggta                                             5964
//
ID   BEL-10_TrNi-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-10_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-270
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1045-1045 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 270 BP; 74 A; 40 C; 50 G; 106 T; 0 other;
     tgttcaacgt tgtatacgaa gccgtagcgc gatcaattgc atttttaaat atatttcaac        60
     attcattgta aaaaggtttg acccaagcct ccatagatgg cgttgggatc gatttagatc       120
     gcgctatggt ttcgttacat gtaaaactat atatattttt gtaaattttt atttttttgt       180
     gaatcgtcag tattactata tgtcattata agttcgttaa tagtgagtgt ggtgttatta       240
     ttcgttcacc tggaccctgg aatttataca                                        270
//
ID   BEL-110_AA-I repbase;    DNA;    INV; 5533 BP.
XX
AC   AAGE02021062;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-110_AA_;
KW   BEL-110_AA-LTR; BEL-110_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5533
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021062; Positions   59821   54289.
XX
CC   Positions [4560-5144] - Integrase core
CC   'ATATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..5531
FT                 /product="BEL-110_AA-I_1p"
FT                 /translation="MKRTPHKQSKMASDSEDVENDLSTFVQLRGMAQGNIT
FT                 RIKTILNQAQAEQVELPLAQVKVYIKKVETSYGEYHHFHQQIVAILPSNKR
FT                 EEQNEKFLHFETLHEEVSTMLETLLEILTAPLAMQPGHPTVNQPPLVIQQS
FT                 LPRTIPTFDGRYENWERFKIMFRDAVDRTNEAPRIKLYHLEKALVGDAAGI
FT                 IDVKTISDGNYDHAWEILEERFEDKRRMIDIHIAGLLGAKKLSKEDYGELR
FT                 SLVESMSSHVENLKFLEQEFTGVSELIVVHLIARALDPTTKKLWESTIKRG
FT                 ELPSYDNTVRFLKDRVSILERCHDTCEEAKSMRATGKPATKKPLLPKANAA
FT                 TTSPSMDQRCSICDESHVTYKCSVFNSLNVSDRLSKVKEKNVCFNCLRSGH
FT                 SVKSCSSKKSCTKCNKRHHTLLHFENSENSSKLLTENSAAKCTASKSTTPV
FT                 EVPELSKSAASNMKQESQPAMTSAHSSNPVSPASQVVLLTALVNVMDHQQQ
FT                 PRVCKALLDCGSQVSFISQSLVSALGIEVEEVSVPITGIGSVRSTIRQKCT
FT                 LNVHSRCSDFTFTLNCLVSPKITGHVPSVKINLENWELPLGLSLADPSFHE
FT                 PSQIDLLIGMDWFYDIMKPGCLKLNDYLPSLHDSKLGWLVGGKLLDSSSNS
FT                 ALNSYSVRLDPVEELMQKFWEVEGVSSEVVLSSEEEQCETQFAATYRRDNS
FT                 GRFIVQLPLRDIASQLSDSRNMALRRFYMLESKLERHADLRAQYDAFMDEY
FT                 EALGHCQEICERDDSPGLLKWYLPHHAVLRPSNSTTKCRVVFDASAKVSGL
FT                 SLNDVMMTGSNVQSDLLSIILRFRKHRYVMSADVAKMYRQIIVDPAFTPLQ
FT                 RIFWRKSPQDRLRVLELTTVTYGTAAAPFLATRALLQLARDERERFPLASK
FT                 VVEKNIYIDDALFGSDDFQETCELRDQLIGLLQCGGMHLHKWSSNTSRLLL
FT                 SIPCEDRDSCVSFSDSGLNEIIKTLGLMWNPSTDEFLFRTTSRERIKKPTK
FT                 RQVLSEIAKIYDPLGLISPVVVLAKIVMQKLWISKLNWDDQLDEGLMNEWE
FT                 KFLTSLPTSEQIRIPRQILSSKAAYYELHGFADASQKAYGACVYVRSIFSD
FT                 GTASMQLVSAKSKIAPISPLTIPRKELLAALLLTRLVSKVDAALEMNFNSI
FT                 VLWSDSQVVLAWLRKPLGNLQVFVRHRVAEITSNNGYIWKYVRTEQNPADT
FT                 VSRGQSAKELIDNKQWWNGPQFLCIVDYQEGTLEFLRDSEIPELRVEVASL
FT                 PVMNYEEFPVLEKFTSFRKCQRIVAYMLRFISNSRRKNDDRVVARYLTIPE
FT                 LRVASNLIVGAIQHQEFAKEIECVRAGEPNHRLNNLKPFLDKDLLRVGGRL
FT                 GQSQLPFGVKHQLILPNKNPLVHGLILEIHRENHHAGCSMVQYLLRQHFWL
FT                 INARSTIRRVLKGCVTCFRTNPTIIDQQMGNLPSYRITPAPVFERIGLDFA
FT                 GPIYIKQSVRKAIPVKGYICVFICMVTKAMHLEAVEDLSTDSFIAAFQRFV
FT                 SRRGYPKEVFSDNGTNFIGARSALRELYQLFKEETTQKRIFEYCQAKQIEW
FT                 KTIPPNAPHFGGLWEAGVKSCKSVLKRVYQNTSLTLSGLSTLLCQIEAILN
FT                 SRPLYSQSNDPTEPEALTPGHFIINRPLLAIPEPSVVGIPTNRLSHWQHIQ
FT                 QLREHFWKRWSREYLSELQVRAKWTKQKVNVQPGIVVLLKDDNLPPQCWNL
FT                 GRVVKVYPGADNLVRVVDVQTKFGTYKRPIHKLAPLPIIDNDHVAKTSTFC
FT                 LGE"
XX
SQ   Sequence 5533 BP; 1570 A; 1210 C; 1332 G; 1421 T; 0 other;
     tggaatttgg tccttcgaac cggatgctca agtttgagtg tccgaatgtg ttagtgattg        60
     gtggttggat tggatgagtg gtggtggaga caaacacgga gaagtttgaa aagtaaaaca       120
     agagactgag actacaagtg aaacaagaaa ctgaaactta aagtgaaaaa gttatgtgaa       180
     aaaactgaaa aactataagt gaagtgaaaa tgaagcgtac accgcataag cagtctaaaa       240
     tggccagtga tagtgaagac gtggaaaacg acctgagcac ttttgtacag ctacgtggta       300
     tggcacaagg taacatcacg cgcatcaaaa ccatcttgaa ccaagcccaa gcggaacaag       360
     ttgagcttcc tctagctcag gtcaaggtct acatcaagaa agtggaaact tcctacggcg       420
     agtatcatca tttccatcag caaatagtgg caattctccc atcgaacaaa cgagaagagc       480
     agaatgagaa gtttttgcat tttgaaacgt tgcacgaaga ggtttccacc atgctagaga       540
     cccttctcga gattctcacc gcacctctcg cgatgcaacc gggacatcca acagtgaacc       600
     aaccaccgtt ggttattcag cagtcgcttc cgcgtaccat ccccaccttt gacggtaggt       660
     acgagaattg ggaacgcttc aagataatgt tccgcgatgc agtcgatcgc accaacgaag       720
     cccctcgaat caaattgtat catcttgaga aggctctcgt gggtgatgct gcgggaatca       780
     tagatgtaaa gacgatcagt gatggaaact acgaccacgc ctgggaaata ttggaggaga       840
     gatttgagga caagcggaga atgatcgaca ttcatatcgc tggtctgctg ggtgcgaaga       900
     agctatctaa ggaggactac ggtgagttga gatccttggt cgagtccatg agcagtcacg       960
     tggaaaattt gaagtttctt gagcaagagt tcactggcgt ttcggaactc atcgtcgttc      1020
     atctgatcgc ccgtgctttg gatccaacta cgaagaaact gtgggagtcg acaattaaac      1080
     gaggagagct tcccagttac gacaacaccg taaggttcct gaaggatcgc gtctcaattc      1140
     tggagagatg ccacgataca tgcgaagaag ccaagtctat gcgtgcaaca ggcaaaccag      1200
     caacgaagaa gccattgctt cccaaggcaa acgcagctac aacctctccg tctatggatc      1260
     agcggtgcag catatgtgat gaaagccatg tgacgtacaa gtgctcggtg ttcaacagtt      1320
     taaatgtgag tgaccgactg tctaaggtca aagagaagaa tgtttgcttc aactgcctga      1380
     gaagtgggca tagtgtgaag agctgttcgt cgaaaaagtc gtgtacaaag tgcaacaaaa      1440
     ggcatcacac attactccat tttgagaata gtgaaaattc ctcgaagcta ttaaccgaaa      1500
     atagtgcagc aaagtgtacg gcatcgaagt caaccacacc agttgaagta cccgaactaa      1560
     gcaaatctgc agcatcgaac atgaaacagg agagccagcc agcaatgaca tccgcgcatt      1620
     ccagcaaccc ggtgagtcca gcgagtcagg tggtgttgct cactgccctt gtcaacgtaa      1680
     tggaccatca acaacagcct cgtgtgtgca aagccctgct agactgcgga tcacaggtga      1740
     gttttatctc ccaatcattg gtgagtgctc tcggtattga ggtagaagag gttagtgtcc      1800
     cgataacagg cataggtagt gtaaggtcga caatcaggca aaaatgtacc ttgaacgtcc      1860
     actctagatg cagtgatttc acctttacac tgaattgttt ggtctcgcca aaaattactg      1920
     gtcatgttcc gtcggtcaag ataaatttgg aaaattggga gcttccacta ggtctctcac      1980
     tggctgatcc ttccttccat gagcctagcc aaattgatct gctcattgga atggattggt      2040
     tctatgatat tatgaaacca gggtgtttga aattgaacga ttatctccct agccttcatg      2100
     actccaaact tggttggcta gtcggtggaa agttgttgga ttcttcttcc aattctgctc      2160
     tgaattctta ttccgttcga ctcgaccctg tcgaagagct gatgcagaaa ttctgggagg      2220
     tagaaggtgt gtcgtctgag gtggttctgt ctagtgagga agagcagtgt gaaacgcagt      2280
     ttgcagcaac ctaccgtcga gacaatagcg gtcgtttcat cgttcaactt ccattgaggg      2340
     acatcgcttc gcaactatca gactctcgta acatggcctt gcgaagattt tatatgcttg      2400
     agtcgaaact tgaacgtcat gcggatttga gagcccagta tgacgccttt atggacgagt      2460
     atgaagccct tggacattgc caggaaatat gtgaacgtga tgattctcct ggtttgctga      2520
     agtggtatct tcctcatcat gccgtcctcc gcccttcgaa ctctacaaca aaatgtcgtg      2580
     tagtattcga cgcatctgca aaggtttccg ggttgtcact caacgatgtc atgatgaccg      2640
     gctccaacgt gcagagtgat ttgttgtcca ttatcttacg atttcgaaaa catcgatatg      2700
     ttatgagcgc agatgtagcc aaaatgtatc gccagattat cgtggatcct gctttcactc      2760
     cattacaacg gattttctgg aggaagtcac cccaagatcg actgcgtgta cttgaactaa      2820
     cgactgtaac ctatggtacg gcagcagccc cctttttggc tacgcgagct ctgctgcaac      2880
     ttgcacgaga tgaacgagaa agatttccgc tcgcttccaa ggtagtcgag aaaaatatct      2940
     atattgatga tgctcttttc ggttccgatg atttccaaga gacctgtgaa cttcgagatc      3000
     agttgatagg attactgcag tgcggtggaa tgcaccttca caaatggtcg tccaatacta      3060
     gtcggctatt gttatcgata ccatgcgaag atcgtgatag ctgcgtatca ttcagtgaca      3120
     gtggtctcaa tgaaattatc aaaacattgg gattgatgtg gaatccttcc acggatgagt      3180
     tcttgtttcg cacaacgtct cgagaaagga ttaaaaaacc caccaagcgt caggtcctgt      3240
     ctgaaatagc aaaaatatac gatccactcg gcctgatttc tccggtggta gtgctggcta      3300
     aaatagtcat gcagaagttg tggattagta agctgaactg ggatgatcag ttagacgaag      3360
     gcttgatgaa cgaatgggag aaatttctaa catctctgcc gacttcagaa caaattcgca      3420
     ttccacgtca gatattatca agcaaggcag cgtattatga gctccatgga tttgcggacg      3480
     cctcacagaa ggcgtatgga gcctgtgtgt acgttcgttc aatattctcc gatggcacag      3540
     catccatgca actggtcagt gctaaatcaa aaattgcacc aatttctcct ctgacgatcc      3600
     cgagaaagga gttgctagca gcccttctgc tgacgagatt ggttagtaag gtagacgcgg      3660
     cgttagagat gaacttcaat tctattgttc tctggtccga cagtcaagtt gtattggcat      3720
     ggttgcgtaa gcctcttggc aatttacaag tttttgtccg ccacagagtt gcagagataa      3780
     catccaacaa tggatacatt tggaaatatg tgcgaacgga acaaaaccca gcagacaccg      3840
     tgtcacgggg ccagtctgcc aaggaattga ttgacaacaa acaatggtgg aatggtcctc      3900
     agtttctgtg tatcgttgac taccaggagg gaacgctaga gtttctgcgt gattctgaaa      3960
     tccctgagtt gagagtcgag gtagcctccc taccggtgat gaattacgaa gagttccctg      4020
     tattggaaaa gtttacatca ttccggaaat gccaacggat agtagcttac atgcttcgct      4080
     tcatttcgaa cagccgaaga aagaatgacg accgagttgt ggctcgatac ctcactattc      4140
     ccgaactaag agtcgcatca aacttgattg ttggagccat tcagcatcag gagttcgcca      4200
     aggaaatcga atgcgtaaga gcaggtgaac ccaatcatcg cttgaacaat ttgaaacctt      4260
     tcctcgacaa ggatttgttg cgagttggag gtaggctagg ccaatcccag cttccattcg      4320
     gagtaaaaca tcagttgata ttgcctaaca agaatcctct cgttcacgga ttgattcttg      4380
     aaattcaccg agagaatcac catgctggat gttccatggt gcagtacctt ctgcgacaac      4440
     atttttggtt aatcaacgcg agatcgacaa ttcgaagggt gttgaaaggc tgcgttactt      4500
     gtttcaggac aaatcccacc atcattgatc agcagatggg aaatcttccc tcgtatcgga      4560
     ttaccccagc accagttttc gagagaattg ggcttgattt tgcgggacca atttatatta      4620
     agcagtcagt gcgaaaggcg attccggtga agggatacat ttgtgttttt atatgtatgg      4680
     taaccaaggc catgcatttg gaagccgtgg aggatttgtc aaccgattcg ttcatagccg      4740
     cttttcaacg atttgtgtcc agacgagggt accctaagga agtcttttct gataatggga      4800
     ccaatttcat cggagcaagg tcagcattgc gagaactgta tcagctgttc aaggaagaga      4860
     ccacccagaa aaggattttt gagtattgtc aagcgaagca gatcgaatgg aaaacgattc      4920
     ccccaaacgc gcctcacttt ggagggcttt gggaggctgg agtgaaaagc tgcaaatccg      4980
     tactcaaaag agtttatcag aacacctcac taacactttc cggtctttcc accctgttgt      5040
     gccagataga agctatccta aattcgagac cattgtattc ccaatcaaat gacccgacag      5100
     aaccagaagc tttgacccct ggtcatttta taatcaaccg tcctctcttg gcgattcccg      5160
     aaccgtctgt tgtgggtatt ccgaccaatc gtttgtctca ctggcagcac atacagcaac      5220
     ttcgagaaca cttctggaaa cgatggtcga gagagtatct ttctgaattg caagtgcgtg      5280
     ctaaatggac caaacagaag gttaacgttc aaccgggaat tgttgttctg ttaaaagatg      5340
     acaatttgcc accacaatgc tggaatttgg gacgagtagt aaaggtttat ccaggtgccg      5400
     ataacctggt aagagtggta gacgttcaaa cgaaatttgg tacatataaa agacctatac      5460
     acaaacttgc acctttgcca ataatagaca acgaccatgt tgccaaaact tccacttttt      5520
     gcctggggga gaa                                                         5533
//
ID   BEL-110_AA-LTR repbase;    DNA;    INV; 754 BP.
XX
AC   AAGE02021062;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-110_AA_;
KW   BEL-110_AA-I; BEL-110_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-754
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021062; Positions   54288   53535.
XX
SQ   Sequence 754 BP; 210 A; 188 C; 195 G; 161 T; 0 other;
     tgttcagttc gacaatagtc gacccgaaac tgaagcagcg gcgtctagca gtggcagcgg        60
     tatgcacaac gagagctccg cccatccaac cgatgacaac gacaacgatg acgatccgac       120
     accgaatcat ggtgctataa aagcaagggc cgaactgcgc aacaaggtca gtttttgttc       180
     acccgtcagc gtgacaacaa tcgagcgtga agtcccgagc cgtcatccag ccgaagccga       240
     gttggcgaac cgtgatcgtc gcgagtaaat cgaactcgac tgccaacgcg agtgattcgg       300
     ttacaaaacc gaatgcgtgt gtgtcgcaac gattagttgc acgcgagccg ccttacagtg       360
     caaatcggaa agtagccgtc tgccggctga agaataagtt gaagaagaaa gtagtttgtc       420
     aagagagaag aatgaataca gtagtgtaaa ttaagtcttc tttcgtgttt gatttccgac       480
     caccccacat ccagtgccca tccaccaaat agttttgagt tgatttggaa aaaatattca       540
     ctcgagtcgc taagaaaaaa aattcacata tggagttact ggttgctgct agctagaggg       600
     ttagtccagc tgaaccggat cgcggcttca tgaggcgaag cccagccagc gtcggaagga       660
     acatagagtc cttcacccat cccgctcggt tgtttgaggg aacgcgagcc acttagttct       720
     gccagtgcag tgcagtccat tgccgtccgg taca                                   754
//
ID   BEL-111_AA-I repbase;    DNA;    INV; 5685 BP.
XX
AC   supercont1.78;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-111_AA_;
KW   BEL-111_AA-LTR; BEL-111_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5685
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.78; Positions 2573857 2579541.
XX
CC   'TTATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(290..3430,3434..5653)
FT                 /product="BEL-111_AA-I_1p"
FT                 /translation="MWRKLLYPEEASYQSPVRNHPEKKMSDEELKLLVHKR
FT                 GLVKSKVTRIRNSLRAAEENPETISAPQLRVFARSLENHYREFNEVHDALI
FT                 SACAANQRDSQERKYEEFEVLYNETSLVIESLKDAKTPEPVAAVFQQGGVQ
FT                 PQVVHQQTLKAPLPTFDGKYEHWPRFKAMFQDIMGRSPDCDAVKLYHLEKS
FT                 LVDAAAGVIDSQTIQDNNYAQAWAILEQRYENKRLIVDLHIRGLLNLKHMT
FT                 RKSSKELRQLLDECCRHVENLKFLGQELEGVSELFVVNVLTAALDKETREF
FT                 WESKQDHGELPTYDETIECLKNRCLVLERCEAVHPPPLTTKFSSGFQKSSI
FT                 QKVANAVTSSDSVICEFCSGQHPNFKCSAFRNMTVAQRLMKVKEEKVCFNC
FT                 LRKGHRSNTCLSEKTCSKCSQKHNTLLHFDDPGLPEPELQSTPPVSVNVAN
FT                 ASTDPEPVPTTSALVSHVSSTRKSRSSSKEVLLLTALVSLIDDSGRVHPCR
FT                 ALLDCASQVCLISSDMVQKLGKRPRSTNTEVVGVTGRKCASQEVVVSVASK
FT                 VGEYKVDIPCLVMPQVSGTIPTRKIEIKKWQLPANVELADPEFYKPKQVDL
FT                 LIGNEFFFSLLKSGQMKISDDLPLLQETVFGWVIAGPVDVPQQNVVFSHVV
FT                 TEENSSDLLQKFWALEEVIESSSSTTEEQQVESHFVNTHRRDETGRFVVRL
FT                 PFRETVGELIDNRALALKRFFLLERRLQRYPEIKQQYQDFITEYEALGHCC
FT                 EVSEAADPTGVQRYYLPHHAVLKLTSSSTKLRVVFDATARSSGPSLNDVLK
FT                 VGPTIQNDLFTILLQFRRHRFAFSADITKMYRQVVVDQRDTRFQRIFWRKQ
FT                 PTDPIRVLELNTVTYGTASAPFLATRSLVQLAKDEQADFPAAAEVVCEHFY
FT                 IDDALTGANTITEAVCLREDLKKMLARGGFDIRKWCSNSDAVLENVPEEEK
FT                 EKLVKIDDYENTVRTLGLLWDPKNDHFRFIVPSDEDTLQPVTKRFVLSRIS
FT                 RLFDPLGFVSPVVLLAKLFMQSLWVQKLEWDEKIPGDLLAHLKFSNSLKFL
FT                 NEIKIPRCVVPQDCEGFELHGFADASSSAYGACLYLRTVDKNGDINCNLLT
FT                 SKSRVAPLSEMTIPRKELCAALLLSRLLDKVLSALKLPISKIILWSDSQIV
FT                 LSWLKKAPTRLEVFVRNRVAEINRNTQQCLWQYVRSSENPADVVSRGQFPE
FT                 VLDKNALWWFGPEFLRNMHYEPAVVEEIPDSDTPEMKSEVIVNLATIEQLP
FT                 VFTSYGSFRKLQRIVALVLRFINNTRMKDVAKRHLSRSISVAEMRASLVTI
FT                 VRVIQHTELPDEVISQHAAESSKKLARLCPVLDEVNGVLRVGGRLEKSALP
FT                 FDAKHQMILPDHHPVTKLLIRSLHEENMHAGPSNLLAILRQKFWLLRARST
FT                 IRGVIRSCVSCFRASPRRVEQLMGNLPDFRVNPAMPFEYTGVDYAGPIMVK
FT                 EGKYRPKMIKGYIAVFVCLVTKNVHLELVSSLTTEAFLAALDRFVNHHGLV
FT                 KRILSDNATNFTGASNELHALYLQFRDEAIVSKISDFLLPREVEWHFIPPR
FT                 APNFAGLMEAGVKSVKTHLKRTLQNATLNFEEFATVLTHIQAILNSRPLYA
FT                 LSDDPTEPMPITPAHLQLGRPLNSIPKPTYLNTKENRLSRWEYLTLLRDHF
FT                 WKRWSREYLVTLQSRGKWIKPSNNIVPGMIVLVIEDNLPPLTWKYGKVVKT
FT                 YPGEDSLVRVVDVKTVSGTFKRSISKLAPLPIKDNDDLQQGDSSTNGVDSA
FT                 LDLNSVSLGGTSALDV"
XX
SQ   Sequence 5685 BP; 1537 A; 1279 C; 1364 G; 1505 T; 0 other;
     ttttggtccc atcgaaccgg accgtcggcc attttggaac aaacgtgcta tcgaagtgaa        60
     aaatacctat ccagtggaaa gaaaaacgca ttttaaaatg gatccaattg gaatgcaaaa       120
     acattgaaaa gagacctttc cgaaagagtg gatacaagtg ccaagctgta ttgcgaataa       180
     tgcaaagtga aagttcccgg tgaatttcgt cgcgaattta ttgtttccga aataattttc       240
     cgtatggata tcgatcccgt cgttatcctg ttccagtttc gtacgggtaa tgtggcgtaa       300
     gttgctgtac ccggaagaag ccagctacca aagtccagtg agaaatcatc ctgaaaagaa       360
     aatgtcggac gaagaattga aactgcttgt tcataagcgt ggattagtga aatcaaaagt       420
     gacccgcatc agaaattcat tgagagcagc cgaagaaaat cccgaaacaa taagtgcccc       480
     ccagcttcga gtttttgcta gaagcctgga gaatcattat cgcgaattca atgaagttca       540
     cgatgcgtta attagtgcct gtgctgcgaa ccagagggat tcgcaggaga gaaaatacga       600
     agaattcgaa gtgttgtaca acgaaacgag cctggttatc gaatcactga aagatgccaa       660
     gacaccagaa cctgttgccg ccgtctttca gcaaggaggt gtgcagcccc aagtcgtcca       720
     ccaacaaaca ctcaaggctc cactcccgac attcgacgga aagtacgagc attggcctcg       780
     tttcaaggca atgttccagg atattatggg ccggtcccca gactgtgacg ctgtaaagct       840
     ttaccatttg gaaaagtctt tagtcgatgc tgctgctgga gtaattgact cccaaactat       900
     ccaagacaac aattatgctc aggcgtgggc aatccttgaa caacgttacg agaacaaacg       960
     tctcatagta gatttgcaca ttcggggtct actcaatctc aaacatatga cccgaaagtc      1020
     atccaaagag ctacgccagt tattggatga gtgttgtcgg cacgtcgaga accttaaatt      1080
     tctgggacag gagcttgaag gagtgtcaga gttgttcgtc gtcaacgttc ttactgccgc      1140
     attggataag gaaacccggg agttttggga atcaaaacaa gaccatggag agctgccaac      1200
     ttatgacgaa actattgagt gtttgaaaaa tcggtgtctt gttctggaga gatgcgaggc      1260
     ggttcatcct cctccactga cgacgaagtt ttcatcagga tttcagaagt catctattca      1320
     aaaggtggct aacgctgtca cgtcgtccga tagtgtgatc tgtgagtttt gcagtggaca      1380
     gcatcccaat ttcaagtgtt ctgcattccg caacatgacg gttgctcagc gcctaatgaa      1440
     agtgaaggag gaaaaggttt gttttaattg cctccgaaag gggcaccgaa gcaacacctg      1500
     cttgtcggag aaaacgtgct caaaatgttc acaaaagcac aacaccttgt tgcattttga      1560
     tgatcctggt ctgccagaac cagagttaca atccacacct ccagtaagcg tcaacgttgc      1620
     gaacgcatca acggatcccg aaccggtgcc tactactagc gcattggtaa gtcacgtatc      1680
     cagtactcga aaatcccgtt catcatcgaa ggaggttctg ctgctgaccg ctctggtgag      1740
     cctcattgac gatagtggcc gtgtccatcc ttgccgtgca ttgctggact gtgcatcgca      1800
     agtgtgtctg atctccagcg acatggtcca gaaacttgga aaacggccga ggtctactaa      1860
     cacggaggta gtaggcgtaa caggtagaaa gtgtgccagc caagaagttg tcgtttctgt      1920
     tgcctccaag gtcggtgagt acaaggtcga cattccgtgc cttgtcatgc ctcaggtgag      1980
     tggtacgatt cctaccagaa agattgaaat caagaagtgg caactaccag ccaacgtgga      2040
     gttggcagac ccggaattct acaaaccgaa acaagtagat ctccttatcg gcaacgagtt      2100
     tttcttttcc cttcttaaat ccggtcaaat gaaaatttcc gatgatttgc cgttgctcca      2160
     agaaactgtc tttgggtggg ttattgctgg gccagtagac gttccgcagc aaaatgttgt      2220
     attttcccat gttgttaccg aggagaactc atccgatcta cttcaaaaat tttgggcttt      2280
     ggaagaggtc atcgaatcgt catcatccac gaccgaagaa caacaagttg aaagtcactt      2340
     tgtgaatacc caccgtcgag acgaaacagg ccgttttgtc gtccggctac cattccgtga      2400
     gacagttggt gagcttattg ataaccgtgc cttggcgttg aagcggtttt ttctgcttga      2460
     acgtagattg cagcgttatc cggaaataaa gcagcagtac caagatttca tcacggaata      2520
     tgaagctctc ggccattgtt gtgaagtgtc agaggcagcc gatccaactg gagttcaacg      2580
     gtactacctg ccacaccatg cggttttgaa attaactagc tccagcacca agcttcgagt      2640
     ggtattcgat gccactgcgc gatcatctgg gccgtcattg aacgatgtcc tgaaagtcgg      2700
     tcctactatt caaaacgatc tgtttactat cctcttgcaa tttcgtcggc atcgctttgc      2760
     cttctccgcc gacatcacaa aaatgtatag gcaagttgtg gtagatcaac gtgatacccg      2820
     tttccaacgc atattctgga ggaagcagcc taccgatccc atacgtgttc tggaactcaa      2880
     caccgttacc tatggtactg catcggctcc attcttggct acaaggtcac tggtgcagct      2940
     tgccaaagat gaacaagccg attttcctgc ggctgccgag gtcgtttgtg agcattttta      3000
     cattgacgat gcgctcaccg gggcaaatac tatcacagag gctgtttgtt tgagagaaga      3060
     cctgaagaaa atgctcgcca gagggggatt cgacatccga aagtggtgtt ctaattccga      3120
     tgcggttttg gaaaacgttc ctgaggagga gaaggaaaag ctcgttaaaa tcgacgacta      3180
     cgaaaacact gttcgcacgc tcggattact gtgggatcct aaaaatgatc atttccggtt      3240
     tatcgttccg tccgacgaag acacactgca acctgtcacc aagagatttg tcttatctcg      3300
     tatatcaaga ttgttcgatc cacttggttt tgtttcacca gttgttctgc tagcgaagtt      3360
     gttcatgcag tcgctttggg ttcaaaaatt ggagtgggat gaaaaaatac caggtgatct      3420
     gcttgcccat tgattgaaat tcagtaattc cttgaagttc cttaacgaaa tcaaaattcc      3480
     gagatgtgtt gttcctcaag actgtgaggg gttcgaactc catggatttg cagacgcttc      3540
     gtcatcggcg tacggggcat gtttgtattt aaggactgtg gacaaaaacg gcgatataaa      3600
     ctgtaatctt ctgaccagta agtcgcgggt tgctccgctc tcagaaatga ccatacctcg      3660
     taaagaattg tgtgctgcac tcctgttgtc acgtttattg gataaagttt tgtccgcctt      3720
     gaagcttcct atttccaaga ttattctgtg gtcagacagc cagatcgtgc tttcgtggtt      3780
     gaagaaggca ccaacgcgtt tggaagtttt tgtgcgcaac cgcgtagcgg aaatcaaccg      3840
     aaacacacag cagtgtttgt ggcagtatgt gcgatcttcc gaaaacccgg ctgatgtcgt      3900
     ttcacgcgga cagtttcctg aggttctgga caaaaatgca ttatggtggt ttggaccaga      3960
     atttctgcgg aacatgcatt atgaaccagc agttgttgaa gagattcctg atagcgatac      4020
     acctgagatg aaatctgaag tgattgtcaa cttggcaacg attgagcagc tacccgtttt      4080
     tacatcctat ggttcatttc gaaaactcca acgaatcgtt gcattggttc tacgctttat      4140
     taataatacc aggatgaagg atgtggcaaa acgccaccta tcacgttcaa tatcggttgc      4200
     tgaaatgaga gcatcattag ttacgattgt tcgcgttatc cagcataccg agctacctga      4260
     tgaggttatc agtcagcatg cggcagaatc ttccaaaaaa cttgcccgtc tatgtccagt      4320
     attggatgaa gtgaatggcg tgctcagagt agggggacgt ctggaaaaat ctgctctacc      4380
     attcgatgcg aagcaccaaa tgatccttcc agatcaccac ccggttacga agttgttaat      4440
     tcgatcattg cacgaagaaa acatgcatgc cggtccatcc aacctgttgg ctatacttcg      4500
     gcaaaagttt tggttgttga gggccaggtc taccattcga ggagtcatca gatcatgcgt      4560
     ttcctgtttc agggctagcc ctcgaagggt ggaacagttg atgggtaacc ttcctgactt      4620
     tcgggtgaat cctgccatgc catttgaata cactggagtt gactacgcag gacctataat      4680
     ggtaaaggaa ggaaaatatc gaccgaaaat gattaagggt tatatagcag tcttcgtgtg      4740
     tttggtcacc aagaacgtgc acttggagtt agtgtccagt ctcaccaccg aagcgttcct      4800
     tgctgcgctt gaccgtttcg ttaatcatca tgggttggtg aagagaatcc tgtcagataa      4860
     tgcaacaaat ttcaccgggg cttccaacga gttgcacgca ttgtatctgc agtttcgaga      4920
     tgaagctatt gtgtccaaaa tcagcgactt cctgctccca cgagaagttg aatggcattt      4980
     cataccacca cgagctccca atttcgctgg tttaatggaa gctggtgtaa aaagtgtgaa      5040
     aacgcatctt aagcgtacgt tgcagaatgc tacactcaat tttgaggaat tcgccaccgt      5100
     gctgacgcac atacaagcca ttttgaattc tcgtcctctg tatgctctct cagatgatcc      5160
     taccgagcct atgccgataa caccagctca tcttcaacta ggcagaccac tgaattcgat      5220
     tccgaagcca acgtacttga acaccaagga gaacagactg tcgcgatggg agtacttgac      5280
     gcttctgcgg gaccatttct ggaagagatg gtccagagaa tatcttgtca cacttcaaag      5340
     ccgtggaaaa tggatcaaac cttccaataa tatagtacct ggaatgatag ttctggtgat      5400
     tgaggacaat ctaccgccac ttacctggaa gtatggaaag gttgtgaaga cgtatcccgg      5460
     agaggactcg ttagtcagag tggtcgacgt aaaaacggtt tctggaactt tcaaacgatc      5520
     catcagtaag ttggcccctc ttcctataaa ggataacgac gatcttcagc agggtgattc      5580
     ttccacaaat ggtgttgatt ctgctttgga tttgaattca gtttcgctgg gcggtacgtc      5640
     tgctcttgat gtttgaagtc ttctgttctt caacgcgggg gagaa                      5685
//
ID   BEL-111_AA-LTR repbase;    DNA;    INV; 370 BP.
XX
AC   supercont1.78;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-111_AA_;
KW   BEL-111_AA-I; BEL-111_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-370
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.78; Positions 2573487 2573856.
XX
SQ   Sequence 370 BP; 94 A; 72 C; 90 G; 114 T; 0 other;
     tgttcagtct tcgctgagtt gacagctttt atagctgatt tttttgagtg tgttactccg        60
     actactgcga ttgcgtttta tgctacccct ggcaacacag caagtagtgc taccaccttt       120
     gtagaaaaat aatgatttcc cgcgcgatgc ggaaggagag ttgcgtacga ttattgtaac       180
     gcgataggtc gccgagtgaa gtggcgaagt ttttgttaag ttttcttttt aaataaaaca       240
     agtgttaaag tgatcgaaac gtgtttttct ttccaccgga agaaacgaaa aagtgtccgt       300
     agtgaatcca gtccgccggt gaagtgtcca cctcgaacta tttgtgttgg catccgtcgg       360
     atgagcaaca                                                              370
//
ID   BEL-112_AA-I repbase;    DNA;    INV; 5935 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   31-DEC-2018 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-112_AA_;
KW   BEL-112_AA-LTR; BEL-112_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5935
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-5935
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (31-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 100% similar to each other.
CC   [3]: a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..5932
FT                 /product="BEL-112_AA-I_1p"
FT                 /translation="MDSTVGDCMKCNKSNKICDMVQCDTCQLWAHYSCVGV
FT                 TETIKDSDWSCDKCSNELQIPRIPRKISSKKGSSKSKSDGGSTKSSLQDGT
FT                 SGLNDALRKLEAEQCAREKALEEEMTLREKRLEMERILQEKRRQKEKAFRE
FT                 KQLQQDRELKERQLKEEQEMLEKQLEEEAKFVSERKKLHERFEDAKKFLAE
FT                 SLSNAEGATGAAKLKGDNELSFDKKVQFWLKQQNQGRSNATPKLAGSVAES
FT                 EEYEDPVEEETSKNEDHLDGCDAEDFGSAHEERQAFDRIVRNSRTHGPGET
FT                 VPSCYSRQPQQTVKLSQEQLAARQAVSKNLPVFKGEAEKWPMFISCFEYTT
FT                 KACGFSNLDNLKRLQDCLQGDALEAVRSRLVLPESVPDVINDLRRIFGRPE
FT                 KLLKTLLTKVRNAQAPRADRLETFMQFGITVKQLCDHLEAAKLADHLNNPM
FT                 LVQELVEKLPSSYKMDWVRFKRGRIGSPLRIFTDFMNDIVADASEVSEFST
FT                 LFLGDCRETSQSSKGKPKRKEFMHVHNTSSNKPDLPVPFKSTKPCFVCKRT
FT                 DHKLRFCDDFKKFSIADRLKVVDQHKLCALCLNNHGTSRCSFKIRCNISGC
FT                 RGDHHPLLHHAEGSVQLMDIACNTHGALNRGIIFRMIPVTLYFENYALDVL
FT                 AFLDEGSSSTLVENAVAHELNARGFAEPLVVTWTGNVKRLETKSKRISLMI
FT                 SARGSDDKLPLKDVRTVAELKLPKQSLQYERVADRYPHLKNIPVESYELEE
FT                 PRIILGLDNLSVFAPLESRSGSPGEPIGVKSKLGWTIYGPQSCEAVVSEIR
FT                 VNFHSFEPMSNQQLHDAMRTQFLLDEPSLVSVMESAEDARARRIMQETTKR
FT                 VGHRFETGLLWRQDERRFPDSYPMAVSRLKALERKLEQDSELRTKVHQLIS
FT                 DYLAKGYAHKATADELADMENGNAWYIPLNVVLNPRKPGKIRLVWDARAAV
FT                 NGISLNTELLTGPDLLVPLQSIISKFRERRVAFGGDIQEMYHQFRIREADK
FT                 KFQSFLFRRDPSSPPEVYMMDVGTFGATCSPCSAQFIKNMNAVQFEHEFPA
FT                 ASAAVIKKHYVDDYYDSVDTEDEAIKLASEVKLIHSRGGFHIRNWVSNSPQ
FT                 FLEAMGEQPTQSAVHFHQEKESLTERVLGIVWNTEDDVFSFSTVTRPEHQA
FT                 MLHGDSRPSKRIVLSMVMSMFDPLGLLTPFTVYGRILMQDLWRTGCGWDEP
FT                 IDDESFEKWIRWTKVLPTVEALRIPRSYFQQASSTDIEDLQLHILTDASKG
FT                 AYGCAAYFRAIVNGKIQCALVTSRVKVSPLKPMSVPRLELQAAVLGARLAA
FT                 AVRSNHSFNIVQQFFWTDSTTVLSWITSDLRRYKEFVGLRIGEILTLTKLC
FT                 EWRWVPTKLNVADQLTKWARDPELKSDSEWFTGPKFLHQNESLWPKQKKSS
FT                 GTQEELKVHLLVHDIQLAEPVIDVHRISKWTILVRTVATVFRFVSNCRKKI
FT                 SGLPIETLRATDKQAEFIKPVNFSVQQTPLKQIEYEKAERILIKLAQAEVF
FT                 GNEVKVLMRNANVAVADRLQIEKSSFLYKLTPLVDENGILRMESRVERAEF
FT                 LSFDLRFPIVLPKEHAVTTKIVQYYHERFGHGYRETVKNELRQRFFVQAVS
FT                 SVITSVTKNCMWCRINKTRPQIPRMAALPVQRLTPFLRPFSFVGVDYLGPF
FT                 IVTVGRRSEKRWIVLFTCLVVRSVHLEVAHTLTTQSCLMAIRRFICRRGPP
FT                 TEIFSDNGTNLRGASKEIVDKVRCIGAACADEFTSARMKWNFNPPASPHMG
FT                 GVWERLVRSVKDVLAAISDKSRLTDEVLQTSIVEAEDIINSRPLLYVSQET
FT                 DNAEALSPNHFLRGSSPNETLFVAPPVHPVEALRDCYKRSQKLAEEMWNRW
FT                 LKEYVPSIGQRRKWFREVKNLKAGDLVYVVDGDKRKCWVRGVVEEPIPSED
FT                 GRVRQAVIRTNSGVLKRAVAKLALMEISDGDAAPGTISGPGSRAG"
XX
SQ   Sequence 5935 BP; 1732 A; 1280 C; 1520 G; 1403 T; 0 other;
     caaatcaaag aatttgcctc aaaagatgga ctcgacagta ggggattgca tgaaatgcaa        60
     taaatccaac aaaatatgtg acatggtgca gtgtgatact tgccaattgt gggcgcacta       120
     ctcatgcgtt ggagttacgg aaacaatcaa agactcggat tggagctgtg acaagtgtag       180
     caacgagctg cagattccaa gaataccgag aaagatatcg agcaagaagg ggagctcgaa       240
     gtcgaagagc gatggaggat caaccaagtc ttctctccag gatgggacct cggggctaaa       300
     cgatgcgctg cgtaagctag aagccgaaca atgtgcaagg gagaaagcct tagaggagga       360
     gatgactctt cgagagaaac gactcgaaat ggaacgaatt cttcaggaaa agcgtcgaca       420
     gaaggaaaag gcatttcgcg aaaagcagct tcagcaggac agagagctga aagagcgcca       480
     gttgaaggaa gaacaagaga tgttggagaa gcaactggaa gaagaagcta aatttgtcag       540
     cgagcgcaaa aagctgcacg agcgattcga agatgcaaaa aagttcttag ctgagagtct       600
     ttcgaacgca gaaggtgcta ctggagctgc gaagctgaag ggcgataacg agttgtcatt       660
     cgataagaag gttcaattct ggctgaagca gcagaatcag ggccgaagta atgcaacgcc       720
     gaaactagcc ggctcggttg cggaaagcga agagtacgag gatcctgtcg aggaagaaac       780
     atcaaaaaac gaagatcatc tggatggatg cgatgcagag gattttggat ctgctcatga       840
     agaacgtcag gcgtttgata gaatcgtacg aaattcaagg actcacgggc cgggggaaac       900
     tgtgccatcg tgctacagcc ggcaaccaca acagaccgtg aaactctctc aagaacagct       960
     agcagcaagg caagctgtgt caaaaaatct gcctgtcttc aaaggcgaag cagaaaagtg      1020
     gccaatgttc attagttgtt ttgaatacac cactaaagcc tgcggtttct ccaacttgga      1080
     taatctgaaa cgcctccaag attgtcttca aggtgatgct ctcgaagctg tcaggagccg      1140
     gttggtcctg ccggagtcag taccggatgt gataaatgac cttcgtcgta tttttggaag      1200
     acctgagaaa cttttgaaga cgctgctcac gaaagtccga aatgcccaag cgccacgagc      1260
     ggaccgcttg gaaactttta tgcagtttgg aataactgtg aagcagttgt gtgatcacct      1320
     agaggcagct aaattagcag atcaccttaa caatcctatg cttgtccaag agttggtgga      1380
     gaagttaccg tccagctaca aaatggactg ggttcgtttt aagcgtggca gaataggttc      1440
     tcctctgagg atatttaccg acttcatgaa tgacatcgtg gcagatgcgt ctgaagtgtc      1500
     agagttctcg acactctttc tgggcgactg tcgtgagaca tcgcaatcca gtaaaggaaa      1560
     accgaagcga aaagagttta tgcacgtgca taatacatct tccaataaac ctgaccttcc      1620
     ggttccattt aaaagtacca agccctgctt cgtttgcaaa aggacggatc acaagttgcg      1680
     cttctgtgac gatttcaaaa agttcagcat tgcggacaga ctcaaagtcg tggatcaaca      1740
     taagctctgc gctttgtgtc tcaacaacca cggcacaagt cgctgcagtt tcaaaattcg      1800
     ctgcaatata agtggatgtc gaggagacca tcatccccta ctacatcatg cagaaggatc      1860
     cgtgcagctc atggacattg catgcaatac gcatggtgcg ctgaatcgcg gcataatctt      1920
     tcgaatgatt cccgtcaccc tgtatttcga gaactatgcg ttggatgttt tagcattctt      1980
     ggatgaagga tcgtcatcta ctctcgttga aaatgctgtg gctcatgagt tgaatgccag      2040
     aggcttcgcg gaaccgttgg tagttacatg gacaggtaac gtgaaaaggc tcgaaactaa      2100
     gtccaaaaga atcagcctaa tgatttctgc acgtgggtca gacgacaagt taccattgaa      2160
     agatgttcgt actgttgccg agctaaaact accaaaacag agccttcaat acgaaagagt      2220
     ggccgaccga tacccacatc tgaaaaacat ccccgttgag agttacgaac tcgaagaacc      2280
     gaggatcatt ctcggattgg acaacctaag cgtatttgct cctctcgaat cacgatctgg      2340
     atcacctgga gaaccaattg gtgtgaaatc taaactaggg tggacaattt acggccctca      2400
     atcgtgtgaa gccgtagtat ctgaaattag agtaaacttc cattcgtttg agccaatgag      2460
     taatcagcaa cttcatgatg ctatgcgcac tcagtttctt ttagacgaac cctctttagt      2520
     ttctgtgatg gaatcagccg aagatgcgcg agctcgtaga atcatgcagg agacgacaaa      2580
     acgagttggt catcggtttg aaaccggatt actatggcgc caagatgaac ggagattccc      2640
     tgatagctat cccatggcag tatcccggtt gaaggcattg gagaggaaat tggaacaaga      2700
     ttcggagctc cgtactaagg tccatcaact aatatcagat taccttgcaa aaggatatgc      2760
     gcataaggcc actgcagacg aactggcaga tatggaaaat gggaacgcct ggtacattcc      2820
     tttgaacgta gttctcaacc ctcgaaaacc aggtaaaatt cgtctagtat gggacgcacg      2880
     agcggccgtt aatgggatat cgcttaacac ggagctacta accgggcctg atttgctggt      2940
     tccactacag tccatcataa gcaagtttcg cgaacgaagg gtggcgtttg gaggagacat      3000
     ccaagagatg taccaccagt ttcgtatacg ggaagctgac aagaagtttc aaagttttct      3060
     tttccgtcgg gatccgtcca gccctcctga agtctatatg atggacgtcg gaacatttgg      3120
     ggcgacgtgt tctccgtgtt ccgcccagtt catcaaaaac atgaatgcag tgcagttcga      3180
     gcatgaattt ccagctgcct cagcagcagt aatcaagaaa cactatgtag atgattacta      3240
     cgacagtgta gacactgagg acgaagcaat caaattagcc tctgaggtca agctgattca      3300
     ttctcgtgga gggttccaca tcaggaattg ggtatccaat tctccccaat tcctggaagc      3360
     gatgggagag cagccaacac agtctgctgt acactttcac caagaaaagg agtcgttgac      3420
     agaacgcgtc ctaggaatag tttggaatac agaagacgat gttttttctt tctccactgt      3480
     gactcgtccc gaacaccaag ctatgctaca tggtgacagt agaccatcaa aaaggattgt      3540
     tctgagcatg gtaatgtcaa tgtttgatcc tctcggacta ctaacaccat tcacggtata      3600
     tggacggatt ctgatgcaag atttgtggag aaccggctgt ggatgggacg agcccatcga      3660
     tgacgagtct tttgagaagt ggattcgatg gacgaaagtt ctgcctactg ttgaagcgct      3720
     tcgaataccc cgcagttact tccaacaagc aagctctact gacatcgaag atctccaact      3780
     acacatcctt acagacgcca gtaaaggcgc atatgggtgt gcggcatact ttcgggcaat      3840
     cgtcaacgga aaaatacaat gtgctttggt gacgagccgt gtaaaagtat cccctctgaa      3900
     acctatgtcc gtaccacgac tcgaactgca agctgcagta ttgggagcaa gattggcggc      3960
     agcagtgcgg agtaaccatt cgttcaacat agtgcagcag ttcttctgga cagattccac      4020
     taccgttctg tcttggatca cttctgactt gcgaagatac aaagagttcg ttggattacg      4080
     gataggagag attctcaccc tcactaagct gtgtgagtgg cgttgggttc ccacaaagtt      4140
     aaacgtggcg gaccagttga caaagtgggc ccgagatcca gaattgaagt cagacagcga      4200
     atggtttacg gggccaaagt tcctccacca aaacgagagc ctctggccga aacagaaaaa      4260
     atcgagtggt acacaggaag aattgaaagt tcatttgctt gttcatgata tacaactagc      4320
     cgaaccagtt atcgatgtac atcgcatctc aaaatggacc attttggtac gtactgtggc      4380
     taccgtcttc agattcgttt ctaactgtcg caagaagata agtgggttac caatcgaaac      4440
     cttgagagct acggataagc aagcagaatt catcaaacct gttaactttt ctgtacaaca      4500
     aactcctttg aagcagatag agtatgagaa agccgaacgt attcttatca aattggcaca      4560
     agctgaggta tttggaaacg aggtgaaggt acttatgaga aatgcgaatg tagctgtggc      4620
     ggacaggctg cagatcgaga aatcaagctt tttatacaaa ctaacgcccc tagttgatga      4680
     gaatgggatt ctacgtatgg aaagtcgtgt ggagcgcgca gaattcttat cgtttgacct      4740
     tcgtttcccg atagtgttgc caaaggaaca tgcagttacg acaaaaatcg ttcaatacta      4800
     ccatgaacga tttggtcatg gatatcgaga aacggtgaag aatgagctgc ggcaaaggtt      4860
     ctttgtgcag gcagtaagtt ctgtgattac cagcgttacg aaaaactgta tgtggtgcag      4920
     gatcaacaaa actcgtccac agattcctag aatggcagca ttaccggtgc aaagattaac      4980
     tccattcctg agacccttca gttttgtggg cgtggactat cttggacctt tcattgtcac      5040
     cgttggccgt cgaagtgaaa agaggtggat tgttttattc acatgcttgg tggtcaggtc      5100
     agttcaccta gaagtagcgc atacgcttac tacgcaatct tgtctcatgg cgattcgccg      5160
     ttttatttgt cgacgtggtc caccaacaga aatattctca gataatggga ccaatctacg      5220
     gggcgcaagt aaggaaatag tggataaggt tcgctgtatc ggtgcggcat gcgctgatga      5280
     gttcacgtca gctcgaatga agtggaattt caatccgcct gcctctcccc atatgggggg      5340
     agtttgggaa agactcgtga ggtccgtgaa agatgtacta gcagcgatta gtgacaaaag      5400
     ccgcctcacc gatgaagttc ttcaaacatc gatcgtcgaa gctgaggaca taataaattc      5460
     tcggccactt ttgtatgtca gccaggaaac ggacaatgcg gaagcgctca gtccgaatca      5520
     ctttctccgc ggcagttcac cgaacgaaac actttttgta gcacccccgg tacacccagt      5580
     agaggctcta agagattgct acaaacgttc acaaaaacta gccgaagaga tgtggaatag      5640
     gtggctaaag gaatatgtac catcgattgg ccaacggagg aaatggttta gagaggtcaa      5700
     gaatttaaaa gctggtgatc tggtttatgt cgttgacgga gacaagcgga agtgttgggt      5760
     gcgcggcgtt gtggaggagc ccataccttc ggaagacggg agagtacgac aagctgtgat      5820
     tcgcaccaac agtggagtac tgaaaagggc cgtagcgaag ctagcgctca tggagattag      5880
     tgatggtgac gctgctccgg gaacgatatc cggaccaggt tcacgggccg gggta           5935
//
ID   BEL-112_AA-LTR repbase;    DNA;    INV; 703 BP.
XX
AC   AAGE02020778;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-112_AA_;
KW   BEL-112_AA-I; BEL-112_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-703
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020778; Positions  122208  122910.
XX
SQ   Sequence 703 BP; 252 A; 131 C; 122 G; 198 T; 0 other;
     tgttccgatc aacaccactg ggctcatcac gatatccctg ccggagtgtg cagagtcggt        60
     gcgcacgtac aatacagcga gactggcaac tcaggacagt ataagtaacg tagttgtaag       120
     atccagaaca aaacaaacca aaataattat tcataaaacg tggaggtgtg ctatattgaa       180
     atcattaaaa tttactctat tttgttgcaa aatacactgc aaaaatttcc aataagcttg       240
     aacatttact gaagaagtaa gttttattga attgggtaaa tatttatcct caaactaact       300
     taaagttcaa taattaggca cggaacgata actcaggtta ggcttgcagc aattgcacca       360
     aaggctattg caaactccag aaaattaaag taagttctta cacatttcct atcaactacc       420
     tgaaatccta atactagata catttgcttg aaactattta caaattcctt attctactat       480
     gtacaattta atcgtgaact atatggagta ggagatcgaa cattgccagt gttaacctag       540
     cgaggcccat ttgcaagagg ctgacggatt gaaaaccaaa ttgtgagtag taaaatctta       600
     actgtcaatt gaaatttact aaatacatac catattctag ctttgatcag ctgtaaaaga       660
     agacggtgat tccaaagact ggttcctaga ataaatccga aca                         703
//
ID   BEL-113_AA-I repbase;    DNA;    INV; 5543 BP.
XX
AC   supercont1.256;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-113_AA_;
KW   BEL-113_AA-LTR; BEL-113_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5543
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.256; Positions  868714  863172.
XX
CC   'TATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..5511
FT                 /product="BEL-113_AA-I_1p"
FT                 /translation="MSTPSKTIAEQKSQQKAKQDNARMEEQLKTLSHQRGA
FT                 VKGKLTRVRSAIEHSEDDPNPNIMNLHFLRLHQKTVEQSYREYNEFQNMIH
FT                 ALPLSEERRAEQEAKYVEFETMYANLAIRLSMLIEAATNQMEKKEVVVAAT
FT                 SSSMTPGSTLSYLPPLQAPLPTFDGSYERWFSFKSMFTTIMNRYTHEDPAI
FT                 KLYHLRNSLVGPVAGIIDQDIVNNNDYNAAWQFLTDRFEDRRLIIDKHIEC
FT                 LFNLPKITKDSSANLRKLLDVSSKNIEALKNLDLPLQGLGEQMVINIISSR
FT                 MDKATRVAWEIRQKPGILPSYKDTMEFLQEQCKVTEKIETNMKVESVKPKA
FT                 VTKAHTLINTSELKYDTKSELKCAVCKNAHELWKCESFKKMNVSEKYNTLK
FT                 KTGCCFNCLQKGHRTNGCTSSHSCRECGKRHHTSLHANEVSSSRSPDSITA
FT                 VNQNAVHEEARVSRKESEVSTQVDPPRSGTGTTLSVSVGSQTKQTLLSTAI
FT                 VNVRASNSAVYPCRVLLDSASTEHFVTERFANLVCMKKEPVDYTVSGLNGT
FT                 NTRIRRMVRITIESCVENFSAELQFLVAPKITGDLPERSFNASEWSIPADV
FT                 KLADPEFNRRGRIDMLVGAEIFWNIVKTGQLKLGSNQPVLTDTKFGWVAGG
FT                 VVSSDAPVIARSFCQTALEDLSELLRSFYKLEACDRIHLPNKVVDDICLEH
FT                 FRDTYQRDQQGRYFVRHPFNDRKNELGDSREMATKRFLSLERRLDRQPDIK
FT                 LQYASFMREYESLGHMRAIAVDENEEPGSAYYIPHHCVVKPSSTSTKLRVV
FT                 FDGSATSSSGVAINDALMSGPNIQNDLFSILLNYRGYRYVFTVDVIKMFRQ
FT                 VGVLPPDTAFQRIVWRYDRNEPLMVYELLTVTYGLASSAFQATMALRQVSE
FT                 DHQHEYPQAARVIKKSTYMDDVIGGAHRIQDACALQKEVSELLQKGCFGTH
FT                 KWCANRPEILQHVEKEFHGTDFELGDTSSNIIKTLGVVWNPREDWFSFSVV
FT                 PGNPEATTKRKILSEVAKIYDLLGLVGPVITAAKLILREVSVLQVDWDDPV
FT                 PQSIIHKWRCFREELTCLNNLRVPRWISTGDTVSVQLHGFSDASDEAYGAC
FT                 IYTRVVQNDGSVTIRLVCSKSRILPKKMNKCKPITTPRAELLGAVLLSRLL
FT                 EKTIAAIDIDFESVILWTDSQIVYSWIRKPPGMLQLYVSNRVSEIQRITGA
FT                 YTWRYVPSHENPADVISRGEFPRKLIDNEMWWSGPPMLKAATIEEVQLEPL
FT                 EENLPEMRTGVSLAVTSSLRRLMMFDRVNDYDKMLRSMAYFVRFARYLTSK
FT                 MQTIISGPLTVPELRTALLVIVRCVQKETFHHEIRIIAEGGQSKHRLCGLK
FT                 PFIDLQDGILRVGGRIKRALVPYDSRHQMLLPAGHPFSMAVVRSMHRSNLH
FT                 IGQKSLLAMVRQRFWPLRVKSTIRKVIASCITCFRANPLKTSQLMGDLPSY
FT                 RVQPAPTFAFTGVDFAGPFMIKSSTAGRRPLVTKAYVSLFVCMLTRAIHVE
FT                 LVSDLTTNAFLAALRRFTSRRGLPCKMFSDNATNFVGAQNEVEELARLFED
FT                 QQQAKKITDFCTTQGIEWTFIPPRSPHFGGIWEAGVKQVKHHLTRIVGGYK
FT                 LSYEELYTTLTQIEAVLNSRPLVPSSDDPCDFTAVTPAHFLIGREMQAISE
FT                 PSYLNLKMSTLSRWQLVQTIFQHFWRRWTAEYLPELQNRSKWTKTINITEG
FT                 ALVLMIDQGAPPFQWPLGRVTELHPGKDGVTRVVTVRTSKGEYKRAITEVC
FT                 LLPLDGQ"
XX
SQ   Sequence 5543 BP; 1535 A; 1271 C; 1397 G; 1340 T; 0 other;
     ttggtccttc aggccgaata aatagaaaag tagtggaaaa acgtcgacgc gagtgttttt        60
     tccgcgaaaa atcgttgatt tcgagcattc accagatttg ctggtcgggt gcagcgacgc       120
     gccacgaaaa ttgcaaatgg ccgtcgttcg agaatagtga agtgatcgtg tcgtgtcatg       180
     tcaacaccat cgaaaacgat cgccgaacag aaatcccagc aaaaggcgaa acaggataac       240
     gccagaatgg aagaacagct gaagactctc tctcatcaga gaggggcagt gaagggcaaa       300
     cttacacgtg tgagaagtgc cattgaacat agtgaagatg acccgaaccc gaacattatg       360
     aatttgcatt tccttcggtt gcatcagaaa acagtcgaac agtcgtatcg cgaatacaat       420
     gagttccaaa acatgattca tgccctgccc ctctctgagg agcgacgagc cgaacaggaa       480
     gcgaaatacg tcgaattcga gacgatgtat gcgaatttgg cgatccggtt gagtatgctg       540
     atagaagcgg caactaatca gatggagaag aaagaagttg tcgtagcagc aacatcgtcg       600
     tcgatgacac ccggatcaac tctttcctac cttccgccat tgcaagcgcc gttgccgacc       660
     ttcgacgggt cgtatgaacg atggttttcg tttaaatcca tgtttactac catcatgaat       720
     cgatatacac acgaagaccc ggccattaaa ctttaccatc tgcgtaattc attagttggg       780
     ccggtagcag gaatcattga ccaggacatt gtaaacaaca atgattacaa tgctgcctgg       840
     caattcctga ctgatagatt cgaagacagg aggcttatca ttgacaagca catcgagtgt       900
     ttgttcaatt tgccgaagat cactaaggac agttcggcaa atcttcgaaa gttgctcgac       960
     gtgagcagca aaaacatcga agccttgaag aatcttgacc tcccgctgca aggcctcggc      1020
     gagcaaatgg ttatcaacat catctcatcg cggatggaca aagcaacaag agtcgcgtgg      1080
     gagatacggc agaaaccggg aatcctgccc agctacaagg atacgatgga gttcctgcaa      1140
     gaacagtgta aagtgactga aaagattgaa acgaacatga aagtggaaag tgtgaaaccg      1200
     aaagcggtga caaaagctca tacgctgata aatacaagtg aactgaaata tgatacgaaa      1260
     agtgaactaa agtgtgctgt atgcaaaaat gctcatgaac tatggaaatg cgaaagcttt      1320
     aagaagatga acgtgagtga aaaatacaac acgctgaaga aaacaggatg ctgctttaac      1380
     tgcctgcaaa aaggccaccg cacgaacgga tgcacttcgt cgcatagttg ccgggagtgt      1440
     ggcaagcgtc accatacatc acttcatgcc aacgaagttt ctagctccag atcacccgat      1500
     tcgattaccg ctgtcaatca gaatgccgtc cacgaagaag caagagtctc tcgcaaggaa      1560
     tctgaagtta gcacccaagt cgatcctcct cgatccggca ctggcacaac cctcagcgtt      1620
     agtgttggaa gtcaaacgaa gcaaacattg ctctccactg caatcgtgaa cgtgcgcgct      1680
     tccaactctg ctgtttaccc ctgccgggtg ctgttggatt ccgcgtcaac agaacacttc      1740
     gttactgaac gtttcgctaa cttggtttgc atgaagaaag aacccgtaga ctacacggtc      1800
     agtggtctca acgggacgaa cacgaggatc cgtcgcatgg ttcgcattac aatcgaatcc      1860
     tgcgtcgaaa atttctccgc tgagctacaa tttcttgtag cgccgaagat tactggtgac      1920
     cttccagaga gatcattcaa tgcatcagag tggtctattc cagctgacgt caagctagct      1980
     gacccggagt tcaatcggcg aggacgcatc gacatgctcg ttggtgccga aatattctgg      2040
     aacatcgtga aaactggcca attgaagctt ggatcgaacc agccagtgct tactgacacc      2100
     aagtttggtt gggttgctgg tggtgtagtt tcgtccgatg cgccagtaat tgctcgatca      2160
     ttctgccaaa ccgctcttga agacttgagc gaacttcttc gaagcttcta caaactagag      2220
     gcctgtgatc ggatccacct tccgaacaag gtagtggatg atatttgctt ggagcatttt      2280
     cgtgacactt accagagaga tcagcaagga aggtacttcg tacgccatcc gttcaacgac      2340
     aggaaaaacg agcttggtga ttcccgagaa atggcgacga aacgattcct gtcattggag      2400
     cgacggctcg ataggcaacc agatatcaaa ctacagtatg ccagctttat gcgagagtac      2460
     gagtcccttg ggcatatgag agccattgcg gttgacgaga atgaagagcc aggttccgct      2520
     tactacatac cacatcactg tgtagtaaaa ccttccagta cgtcgacaaa attgagggtc      2580
     gttttcgacg gctctgcaac gtcctcatca ggagtggcaa tcaacgatgc gctgatgtca      2640
     ggaccgaaca tacagaacga tttgttttcg attttgctga actaccgtgg ctacaggtac      2700
     gtgttcacag tagacgtcat caaaatgttt cgacaagttg gtgtccttcc cccggacaca      2760
     gcgtttcaaa gaatagtttg gcgctacgat cggaacgagc ctctaatggt gtatgagctt      2820
     ttgacggtca cctatggtct ggcatcgtct gcattccaag ctaccatggc actccgccag      2880
     gtttccgaag atcatcaaca cgaataccct caagcggcaa gggtaataaa aaagagcact      2940
     tatatggacg acgttattgg aggtgcgcat agaatccagg atgcgtgcgc tctgcaaaaa      3000
     gaagtaagcg aattattgca gaaaggttgc tttggaacgc acaaatggtg tgccaatcga      3060
     ccggaaatat tgcaacatgt cgagaaggag ttccatggca ctgatttcga actgggcgat      3120
     acaagctcga atatcatcaa aactttgggc gtcgtttgga atcctcgtga agattggttt      3180
     tcgttctctg ttgttcctgg caacccggaa gctacaacga aaagaaaaat tctcagcgaa      3240
     gttgcgaaaa tatacgattt gcttggtttg gttggtccag taataaccgc agccaaattg      3300
     attctacggg aggtcagtgt tctccaagtg gattgggatg accccgtccc acagagtatc      3360
     atccacaaat ggcggtgctt tcgtgaagaa ttgacgtgcc tgaacaacct tcgtgtgccc      3420
     agatggattt cgacaggtga tacagtatca gtccagttgc atggcttttc cgacgcctca      3480
     gacgaagctt atggggcatg tatctatact cgtgtcgtac aaaatgatgg ctctgttact      3540
     atccgactag tctgcagcaa atccagaatc cttccgaaga aaatgaacaa gtgcaagccg      3600
     atcactactc ctcgcgccga gttgttaggt gctgtccttc tgtcaaggct actcgaaaag      3660
     acgattgctg cgatcgatat tgattttgaa tcagtgatcc tgtggaccga ctcgcagatc      3720
     gtctacagtt ggattaggaa accacctgga atgctgcaac tgtatgtctc caaccgtgtg      3780
     agcgaaatcc aacgaattac tggcgcgtat acttggcgat acgttcccag ccacgagaat      3840
     ccagctgacg tgatttcacg tggtgaattt cctcggaagc tgatagacaa cgagatgtgg      3900
     tggagcggtc cacccatgct taaggcggca acgattgaag aagtacagct cgaaccgttg      3960
     gaagaaaact tgcccgagat gagaactggt gtttcgctgg cagttacttc ttcattacgc      4020
     agattgatga tgtttgacag agtgaacgat tatgacaaaa tgcttcgatc aatggcctac      4080
     ttcgttcggt ttgccaggta ccttaccagc aagatgcaga cgattatcag cgggccatta      4140
     actgttccgg aattaagaac tgcgctgttg gtgatagtgc ggtgcgtgca gaaggagacg      4200
     tttcatcatg agatacgaat tattgctgaa ggaggccaat cgaaacaccg tttgtgtggc      4260
     ttgaaaccgt tcatcgattt gcaagatggt atcctgcgcg tgggcggtag aatcaaacgt      4320
     gctttggtac cctacgatag tcgacatcag atgcttttgc ctgctggaca tccgttttcg      4380
     atggcagttg tgagaagtat gcatcggtca aatttgcaca ttggacagaa gagtcttctt      4440
     gcgatggttc gtcaaaggtt ttggccgttg agagtgaagt caactatacg caaggttata      4500
     gctagctgca tcacctgctt tagagcgaat ccactgaaga catctcagct tatgggagac      4560
     ttaccttcat accgagtcca accagcgccg acgtttgcct ttaccggtgt ggattttgcc      4620
     ggtcccttta tgattaaatc gtcaacagca ggtcgaaggc cgttagtcac gaaggcctat      4680
     gtcagtctgt ttgtctgcat gctgactcgt gcaattcatg tggaacttgt atctgacttg      4740
     acaacgaatg ctttcttggc tgcgctgcga cggttcacaa gtcgtcgagg gctgccatgt      4800
     aagatgtttt ccgacaatgc cacaaatttt gtcggggcac agaatgaggt tgaagagcta      4860
     gcgcgtcttt tcgaagatca acagcaagcg aagaagataa cggatttttg cacgactcaa      4920
     ggaatcgagt ggaccttcat accacctcgg agcccccatt tcggtggcat atgggaggcc      4980
     ggggttaaac aagtgaaaca ccatctgaca aggattgttg gtggttataa gctgtcgtac      5040
     gaggaactct acactacgtt gacccaaatt gaagcggtat taaactcccg accattggta      5100
     ccgtcctctg atgatccctg tgactttact gcggttacac ctgcacactt cctgataggg      5160
     cgggagatgc aggctatcag tgagccatcc tacttgaatc tgaagatgag cacactttcg      5220
     cgatggcaat tagttcagac catcttccaa cacttctggc gaagatggac agccgagtac      5280
     ttacctgaat tacagaacag gtcaaagtgg acgaagacca ttaacatcac tgaaggagct      5340
     ttggtgctga tgatcgacca aggtgcgcct cctttccagt ggccgctcgg ccgggtaacc      5400
     gaattacatc cggggaagga cggagtaaca cgtgtcgtca ccgtaaggac ttcgaagggt      5460
     gaatataagc gggctataac ggaggtatgt ctgttgcctc tagatggcca gtaacattga      5520
     aacaggtttc aaggccggga gga                                              5543
//
ID   BEL-113_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   supercont1.256;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-113_AA_;
KW   BEL-113_AA-I; BEL-113_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.256; Positions  863171  862977.
XX
SQ   Sequence 195 BP; 64 A; 38 C; 35 G; 58 T; 0 other;
     tgttacgcga gaaattgcta ctgcagaatc caactttaac aggaagaccg gaagataaac        60
     ctttcacata cacacatgta tctttcatga ataaagttaa agtaattgtt gaactcatta       120
     gaatcggacg cgttttattt tcgatttcga gtttccttaa aaatatacag tccgctcggc       180
     ttatcggaag gcaca                                                        195
//
ID   BEL-114_AA-I repbase;    DNA;    INV; 4235 BP.
XX
AC   AAGE02020048;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-114_AA_;
KW   BEL-114_AA-LTR; BEL-114_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020048; Positions  115278  119512.
XX
CC   'AGATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           863..2875
FT                 /product="BEL-114_AA-I_1p"
FT                 /translation="MPIEHTPKKQPVDPEELKMLIHQRGQIKGKVTKINRS
FT                 VEEAEDDPTKLSISLLKVFSKKLEMHYNEYISIHREVIAAIPPSKIEEQDE
FT                 KLDEFDQLHTETLERIEQLMESFTKPVDAQHQANADGSAPQVIVQQQPLRA
FT                 PIPTFDGNTENWPKFKAMFEDLVGRSRDSDAIKLHHLDKALVGDAADLINA
FT                 KMIQDNDFRQVWKQITDQFENPRVIVDTHIDGLIQLKPAAKGSLKDLVSLT
FT                 KACDRHVAGLEYQGLVIDKLSGLIITKLVVNCLDNHTRQLWERTQKHGELP
FT                 DYNQTMLFLKNECQILDRCNNSRVAGSTKEPSTKSSNPKPSLKSHISTSVN
FT                 GSNNCLICGEDHRHFECSKFHALNMSERIAKVKELKICFNCLRPGHRVADC
FT                 ASKKTCSTCRKKHHSLLHEESFAKAQPESKPQVHKPAPPKTDSSMVASTSG
FT                 SGSTAVPEQQLPVSSTCSCNHSQSLKTVMLLTAVVMLESNGELIPCRVLLD
FT                 SGSQVNFLAERMADRLKVPREAMSVPITGVGGSKMYAREKLSVTVQSTYSA
FT                 FTSSVECLVVPKVTGIIPGTKIDVSSWPIPTGFHLADPEFNVPKGIDMLIG
FT                 ASKFFSLLKSGQLHLADGLPELQETHFGWAFSGEISDVDSNELLSHAASLA
FT                 SLDIPIIHSREVENFPDSTSLT"
FT   CDS           2886..3899
FT                 /product="BEL-114_AA-I_2p"
FT                 /translation="MYQCVKSSQQTHQHLPSGRFSIHLPYRQELSDLQWHL
FT                 SKNLDFKPQCTKFIDESDALIHSCEDNALEDKYQSTGPPVKSLNDGYRVGK
FT                 PVESELFSGLRFRKHSVLVTADIEERYRQNLVVTLHPKCHCILSGCNLSWL
FT                 QFRNASAQVSEVTILRYDFSTSTIAVKIHRCADFSAYGAVICVRIILSDSS
FT                 DRLHILCRNSRVPFKRLLAARFPSKFNDSYVQRFIEACSLKSSTLQIRFIN
FT                 LEVIIKVVQYEIQRVQNEKEYKRIVDLNPLCLVGVLKVIERLKPSPLLFNS
FT                 KYPYISPKHPIVYRDYPIEEVHEGSENLLVALPWIFYPFTVVPKHN"
XX
SQ   Sequence 4235 BP; 1213 A; 948 C; 915 G; 1159 T; 0 other;
     tggtccttcg agccggatcg ccaccaacga acgccggatg gtagcctttg gtctggatgc        60
     ttggagaaca gtgtcgaaaa gtgagaagtg aatacgaaaa gtacagtccg cgaaaagttt       120
     gagtgaaaat ccgtcgttgt cggttgagaa gaaattcagc cggtgtgttg ttcgcgtcat       180
     cgtcggctgt attctgccga gccgattgca agctgaaaca tccagccaac ccgtgacatc       240
     attactgcaa acttccggta gcaaaacgtg aaaaagttgt gaagaagaaa aacttccgtg       300
     atgagtaagt aagccgaact gcaagtgtga aaaactcgac taacgttaca gcagccggcg       360
     agtgttatgg aaaatactag aacagtgaac attctgggtt gatagtccac catttcctag       420
     ttttgaaaaa gccagttgtt ttttgtgata cgttgtgcct caccgtgctc tagttagtga       480
     tctgtactgc ccccgtttcc gaatcaaagt tcagtaaacg cagccagaaa actttacgat       540
     tttgaatcaa tgtttagtga acacagccag caaagtactg tacaaggagc tacggtgagt       600
     ttatccaagc cttagtttga aaagtccgcc attttgttga taaactagtc gttatccccg       660
     tcgatatccc tgtcgttccc cgttgtcctc cgcattcgtc ttcttattca tcgtcgttcc       720
     ccgttgtcca ctgctgtgaa aagtttgtgc gactggagta tccacgtcgt ttgtgccgga       780
     agagagtatt tgtgctaccg gaagtgagaa ttttggaaga aagtgttgtg aaagactaaa       840
     aagactaaag tgaagtgtaa aaatgcctat cgaacataca ccaaagaagc agcccgtgga       900
     tccggaagaa ctgaaaatgt tgatccacca aagagggcaa atcaaaggca aagtgacaaa       960
     aataaacaga agtgtagaag aagcagaaga tgatccaaca aaattgagca tatcattgct      1020
     aaaagtgttt tccaaaaagc tcgaaatgca ttacaacgag tacatttcga tacatcgcga      1080
     agtgattgca gccattccgc cgtcgaagat agaagagcaa gacgagaagc tggatgaatt      1140
     cgatcagctt cacaccgaaa ctctcgaacg aattgaacaa ctgatggagt cgttcaccaa      1200
     acctgttgat gcacaacacc aagccaatgc tgacggatca gcacctcaag tcatcgtgca      1260
     gcaacaaccc ctgagagcac caatcccaac cttcgacggc aatacggaga attggcctaa      1320
     gtttaaggcc atgtttgaag acttagtcgg acgcagccgc gattccgatg ccatcaagct      1380
     gcaccacctg gacaaagcct tggttggtga tgcagctgac ttgatcaacg ccaaaatgat      1440
     ccaggataat gatttccgac aagtttggaa acaaatcacc gatcagttcg agaatccaag      1500
     ggtcatcgtg gacacccaca tcgatggtct catccaactg aagccagcag cgaaaggaag      1560
     ccttaaggat cttgtgtcgc tgaccaaggc ctgcgatcgc catgtcgcag gattggagta      1620
     tcagggtctg gtcatcgaca aattatccgg actcatcatc acgaagctcg tcgtcaactg      1680
     cctagacaac cacactcggc agctttggga gagaacgcag aaacacggtg agttacctga      1740
     ctataatcaa actatgctat ttttgaaaaa cgaatgccaa attcttgatc gttgtaataa      1800
     ttctcgtgtc gcgggttcaa ctaaggagcc aagcaccaaa tcatctaacc ccaaaccatc      1860
     cctcaaatct catatttcca catctgtaaa tggttcaaat aattgtttaa tttgtgggga      1920
     ggatcaccgc cattttgaat gttcaaaatt tcacgctttg aatatgtcgg aacgtattgc      1980
     caaggttaag gagttgaaaa tttgtttcaa ttgccttcga ccgggtcacc gagttgctga      2040
     ctgtgcctcc aagaaaactt gttcaacctg tcgtaaaaag caccattccc tgctacatga      2100
     agagtctttt gcaaaagctc aaccggaatc gaaacctcaa gttcataaac ccgcacctcc      2160
     gaagacagat tcctccatgg tagcttccac ttctggttcc ggtagtaccg ccgtccctga      2220
     gcaacaacta cctgtgagtt ccacgtgttc ttgtaaccat tctcagagtt tgaaaactgt      2280
     gatgttgctg acagctgttg taatgcttga gagtaatggt gaattgattc cttgccgtgt      2340
     acttctggat agcggttccc aagttaattt cctcgccgag cgaatggctg accgattgaa      2400
     agttcctcga gaagccatga gtgtccctat tacaggagtc gggggttcaa agatgtacgc      2460
     tagagaaaag ttatcggtta cagtacagtc aacatattcc gctttcacct caagtgtcga      2520
     gtgtttagta gttccgaaag taactggaat catcccaggg acgaagatcg acgtttcttc      2580
     ttggccgatc cccactggat tccaccttgc agatcctgag tttaatgttc ccaaaggtat      2640
     cgatatgttg attggtgcct ctaagttttt cagtctactt aagtcagggc agcttcacct      2700
     agctgatggt ctaccggagc ttcaagaaac ccactttggt tgggctttct ccggtgagat      2760
     tagtgatgtt gacagcaatg agttgctgtc tcatgcagct tcactcgctt ctttggatat      2820
     acccataatc cattcacggg aagtggaaaa tttccctgac tcaacttcgt tgacttgacg      2880
     tatcaatgta tcaatgtgta aagtcgtccc agcaaactca ccaacatttg ccttctggtc      2940
     gattctcaat ccacctaccc tatcgacaag agttgtctga cttgcagtgg cacctcagta      3000
     aaaatctgga ttttaagcca caatgtacca aattcattga cgaatctgat gcattgattc      3060
     acagttgtga ggacaatgct cttgaagaca aatatcaatc gactggtccg cctgtaaagt      3120
     ctctgaatga tggttatcgc gtagggaagc ctgtcgaaag cgagttgttc agcggccttc      3180
     gttttcgtaa acactctgtg ctagtcactg ccgatattga ggaaaggtat cggcagaatc      3240
     ttgttgtaac tctccacccc aaatgccatt gcatactatc tggatgtaat ctatcgtggt      3300
     tgcaattccg caacgcgtca gcgcaagtta gtgaggttac tattctacgt tatgattttt      3360
     caacctcgac aattgctgtg aaaatccacc gttgcgcaga cttctctgct tacggtgcag      3420
     tgatttgcgt tcgtattatt ctttccgata gttcagatcg tctccacatt ctttgtagaa      3480
     attcgagagt acccttcaaa aggctcctgg ctgccagatt cccatctaaa ttcaatgatt      3540
     cgtacgtgca acgattcata gaagcttgca gtctgaagag ttcaaccctt caaattcgat      3600
     ttatcaacct agaggtcatc attaaagtcg tccagtatga aatccagcga gtccaaaatg      3660
     aaaaagaata taaacgtatt gtagacctaa atcccttgtg tctcgttgga gttctcaaag      3720
     tcatagagag gcttaaacca tcccctttgt tgttcaattc caaatatccg tatatttcac      3780
     cgaaacatcc tattgtgtat cgcgattatc cgattgaaga agtccatgaa ggttcagaaa      3840
     atctgcttgt cgcattgcct tggatattct acccattcac cgtcgttcct aaacacaatt      3900
     gagaaggttt tcaattgaac tgtcttaatc attggcaatg tgttcaatgt ttgcgtgatg      3960
     attttttcat taaatggcct cgtttttgtt tgcaaacagt atacccttcc aataaaaatc      4020
     gtattgaatt acaccaagta taattgttta gcatgagagt aaataaaata ccagtactta      4080
     tgtggaaatt tgaaacaata aataaccaaa cctatcctgg gaacagataa tttggtgtat      4140
     accgtcgagt gcaggtagtt tattagcgta taattgcatt aatatggcaa gtttgattga      4200
     acagtcagag aattcatctc agcccggcgg gagta                                 4235
//
ID   BEL-114_AA-LTR repbase;    DNA;    INV; 646 BP.
XX
AC   AAGE02020048;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-114_AA_;
KW   BEL-114_AA-I; BEL-114_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-646
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020048; Positions  114632  115277.
XX
SQ   Sequence 646 BP; 185 A; 167 C; 125 G; 169 T; 0 other;
     tgttggcgcc aacgccaaat tagcgtctca ttccgttaac gaaaatgcca cattacaaat        60
     tttgttattt ccattcatcc cgaccgctcg cgcaaggtac agttgtgtaa ttttcattca       120
     aacctactga accacaccac cgctttgcaa agaaaatcaa accaccacgg cgcagcttga       180
     aaaatatcaa taataagctc cgcctttcag ctggaagaag gtaatcgtat gttgccatct       240
     ccactcttct tattatataa gacgcatagc agtaagagaa atcatcagtt ttcgtttgta       300
     tctcaaagag tgaacaccaa taaataagtt aaggaaaagt tcctgttctt ttttgcatcc       360
     cggccaaagc agtcctcctg agcaaaaatc caatacggcg atccatcctg agacgaagca       420
     tacattccac ttgagaagac ttccgcctgc gaagctgtgt agcattcacc gatttggctt       480
     gagtggttcc cccccgctgt cctttttagg acaattgagt tgctaagaac cacaagatag       540
     ccaccatccg ctcttgcgag agcactttga gagaaattta gagctgcaca gtttcgaggt       600
     cggacagttc cgattttccc actggagccg ggctagcgct ccaaca                      646
//
ID   BEL-115_AA-I repbase;    DNA;    INV; 6655 BP.
XX
AC   supercont1.79;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-115_AA_;
KW   BEL-115_AA-LTR; BEL-115_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6655
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.79; Positions 1250122 1256776.
XX
CC   'CTTAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1272..2861
FT                 /product="BEL-115_AA-I_2p"
FT                 /translation="MSLASYKVLVAKLSDVQQTFNDIWSYVDDLPEDAPIS
FT                 QMTVRLERLDDLWEKFSEYLIEIKTHAVHDIEKNPYTKERKDFSDRYYHAK
FT                 AFLLDAIKLKQESVELNTSARFLNTSGGGNLDHVRLPQIKLQTFSGNIEEW
FT                 LSFRDLFSSVIHCKADLPEVEKLYYLKGCLQGEPKNLIDSLQITSANYKVA
FT                 WDLLQKRYDNSKHLKKLQVQALFKLPSLTKESSSDLHTLVDGFERIVQTLD
FT                 NVVLPGDYKDLLLVNILSARLDPVTRRGWEEFSSTKQQDTVVELTEYLQRR
FT                 IRMLESLPGKQSESKNSAQFHQPGKFKTSSVKTSFNTVQTSGASCVACSAN
FT                 HQLFQCSVFQRMPQLEREAVLRNHSLCRNCFKSGHHAKDCQSKFSCRYCKK
FT                 RHHSLVCFRPDKDNSSKSVVAPKPTRSNNSRDEQDSTETATPGSSTTGNST
FT                 SQVSNMAATDAVVAHGSAQYSKVLLATAIVIVEDNSGHRYPARALLDSGSE
FT                 SNFVTERLSQRLRVTRGKIDGMDRPWNRPSKDQR"
FT   CDS           3232..6045
FT                 /product="BEL-115_AA-I_1p"
FT                 /translation="MARFWSCEEVGSAENYSPREARCEQHFVHTVQRGEDG
FT                 RYTIALPTDEDVLERIGESREIAVRRLQATERRLAKNADLRTQYCAFMAEY
FT                 FQLGHMSKVENVPGSVKRCYLPHHPVVKEASTTTKVRVVFNASSETSTRVT
FT                 LNDALLVGPIIQDDLRSIIMRSRTKQVMLVADVEKMFRQILVREEDRPLQS
FT                 ILWRSSPEEEISTYELNTVTYGTKPAPFLATRVLKQLSDDEEGRFPLAAKA
FT                 VREDTYMDDVITGSNDVDEAVQLRVQLQELMNAGGFRLRKWASNYPEALDG
FT                 VGTEDLAIPITEISLDPDPAVKTLGLTWMPRTDTLRFQFTIPALEDVEPLT
FT                 KRKVLSTIATLFDPLGLIGAAITSFKVFMQQLWTLESEDGRRLDWNQPLPH
FT                 TVGETWRNYHRQLPILNEIRINRCVMVPQTERIDLHCFSDASEKAYGGCVY
FT                 VRSEDSSGNVLVRLVASKSRVVPLSCQTIPRLELCGALLTAELFEKVNQAI
FT                 RLPADVHFWTDSTCVLDWLVATPSTWSPYVGNRCAKIQRLTEGWQWRHVPG
FT                 VQNPADLISRGITPQNISGNRFWWHGPDWLLGSPEGWPHSTVSSNAEEVEK
FT                 EKRRTVTVVTATTAPEFVEEYVAKFSSYSEMIRTAAIWQRLMKLLRKPKAE
FT                 RRGGFLSSDELKDAEYTILRQVQKVALADEWRALSEGVPVSLKSSLRWFHP
FT                 YISADGLIRLGGRLRHSAESEDFKHPIVLPKGHRLTRLLVEQYHGRLLHAG
FT                 PQLLLSTIRLKYWPLDGRSIVRQVVHRCHKCFRAKPSPVKQFMGELPAERV
FT                 TISRPFSRTGVDFFGPVYVRPGPRRNAVKAYGAIFICLATKAVHIELVSDL
FT                 STDRFIQALRRFVARRGKCADIFSDNGTNFVGARNRLQELLRLLKDVGVGT
FT                 LALQVVPISVAFGRQRFVPRSTTCRESSETHQYP"
XX
SQ   Sequence 6655 BP; 1703 A; 1596 C; 1733 G; 1623 T; 0 other;
     catggtcctt cgaaccggat agtgctgaac tggagtggtc acggatttga gcgtgtagga        60
     tttccgccat cgcggtttca cgttacgacg ctttgttacc gcgctgtaat agcgaatcgc       120
     catcctttcc gtatatgaaa aggagtttcg tgacaaaaga agaataggct cttggcgcgt       180
     acccaagcca agccaagcct ggacgccgcc ctgttggttt cctgtactaa agattcggga       240
     cggtgactgc tagcatcgga cttggaaggc aacactaagt ttgctccgcc tgtgggtttt       300
     ccaggtaatt aattagacac ttagtgtatg tcttgtcgga gctaggcatt tccctttgct       360
     aacaccggtt ttattcattc acactgtcat cgctattacg gagccatcat cactctacgg       420
     ggatcgtcgt tccgcttaac cagataggaa gctctggagt tgtggatact tggtatacga       480
     ttatcagccc ggattggaat cggcgctggt gctgatcgat tcatcggatt actactcatc       540
     gcctgcacga ccgacgggtg gactcaagca aggaggcagc aacgtggagc gttatccagg       600
     ttagtgaaca tttagtgtat gtccgccgaa gcgtgggcgt ttggatactc cacaatttta       660
     aataaaattt atcctccttg gcttgcgaca tctacaccca cacatccctg ctatatacta       720
     cggattattg aggctatata aactataatt gaacgttttt tggatacgtt cggcatcatt       780
     tggcacgggc attggtacac cgttgttttc tccgggtgag ttgcacggta tatgtcccgt       840
     cgaagcaatt ttttggatac tatagttaat ttccctccct ttcacgcgac ttgatgaaat       900
     tgaacaagat ttgatccaca tctggctacg ctttgctacc aaagttggac gattttaccc       960
     tattgctgca cccgtgacgc tgttcacttg gttaggtgag tcgaacagta tatgtgcagc      1020
     cgaagttaaa tttttggata ctaccgccac gattctctcc tctattcaca ccaatccacg      1080
     agattccgaa caatcgacgt tgttgtcaca acattgtgtg gccgaatacc gccgactgcg      1140
     tagggtgtcc tgtatcactc tcataggtta gttagagcac gatatatgtc ctagcgaagc      1200
     taggcaatta cgcagtatac tacaccatca ttttcatccg ttcaacaacc gattgatttc      1260
     gccgagtcat catgtcgctg gcatcgtaca aggtcctggt ggcgaagctg agcgatgttc      1320
     aacaaacctt caacgatatt tggagctacg ttgacgatct gccggaggat gcgcccatca      1380
     gccaaatgac agttcgtttg gaaagactgg acgacctgtg ggagaagttt tccgagtatc      1440
     tcatcgaaat caaaactcat gccgtccacg acatcgagaa gaatccgtac acaaaggaga      1500
     ggaaggactt cagcgatcgc tactaccatg cgaaagcgtt tctactggat gcgatcaagc      1560
     tgaagcagga atcagtggag ttgaacacgt cggctaggtt cctaaatacg tccggtggtg      1620
     ggaatcttga tcatgtcagg ttgccacaga tcaagcttca aacttttagt ggaaacattg      1680
     aggagtggct cagtttccgc gaccttttct cctcggtcat ccactgcaag gcggatctcc      1740
     ctgaggtaga aaagctctac tacctcaagg gatgcctcca aggagaaccg aaaaatttga      1800
     tcgactctct ccaaatcact agcgccaatt acaaggtcgc ttgggatctt ctacagaaga      1860
     gatacgacaa cagtaaacac ttgaaaaagc tccaggtgca agcacttttc aagcttccta      1920
     gcttgaccaa agaatcctca tcggatctgc acactctcgt ggatggtttc gagaggatcg      1980
     tgcagacctt agataacgtc gtcctgcctg gtgattacaa ggacctattg ttggtcaaca      2040
     ttctctctgc gcgattggat cctgtgacac gtagaggatg ggaggagttt tcttctacaa      2100
     aacaacagga tacggttgtt gaactcaccg aatatctcca gcgacgcatc cgtatgctgg      2160
     aatcgctgcc agggaagcaa tcggagtcca agaactcagc tcagttccac caacccggga      2220
     agttcaagac atcttcggtc aagacgagct tcaacaccgt ccaaacatcc ggagcaagtt      2280
     gtgttgcctg cagtgccaat caccagctgt ttcagtgcag tgtattccaa aggatgccgc      2340
     aattggaaag ggaggcagtt ctcagaaatc attctctctg tagaaactgt ttcaagtccg      2400
     gtcaccacgc taaggattgc cagtcgaagt tctcttgccg gtattgcaag aagcgtcatc      2460
     attcgctggt gtgcttcagg cctgacaagg acaattcttc gaagtcggta gtggcaccga      2520
     agccgacgag gtccaacaat tcgagggatg aacaggattc tacggagacg gctaccccag      2580
     gttccagcac tacgggtaat tctacatcgc aagtatccaa catggcggcc accgatgccg      2640
     tggtggctca cggatcagcc cagtattcca aggtactgct ggcgacggct atcgtgattg      2700
     tcgaggacaa cagtggacat cgctatccag cacgcgctct gttggactca gggtcagaga      2760
     gcaatttcgt tacggagagg ctcagccagc ggttaagggt aacccgcggg aagatagatg      2820
     gaatggatcg gccatggaat cggccaagca aggaccaacg ttaggcagca gatcgaaacc      2880
     accattcgat cacgtatttc ggattactcc cgacggatga actttctcgt tctaccgaag      2940
     gtgacagtca atctacctac aactacgatc aacgtttcaa gctggaggct accagatggc      3000
     atcgaattgg ctgatccatc gttcaatgtg tccgtggcga tagatatggt tctgggaatc      3060
     gaatcattct tcgatttctt caggaatgga cggcagattt cgttaggaga gcgactgcca      3120
     gcactcaacg aatctgtatt cggttgggtg gtttgcggtg gagtatcggt tcccaatcag      3180
     tcggtgaaca ttagctgcaa cgtgtcggct tgagaaggtc tagaggagtt gatggcccga      3240
     ttttggtcct gcgaggaggt cgggtcggct gaaaactatt cgccacgaga agcgcgttgc      3300
     gagcagcact ttgttcatac cgtacaaagg ggggaggatg gccgttacac tatcgctcta      3360
     ccgactgacg aagacgtttt ggagcggatt ggtgaatcaa gagagatcgc agttcgacgt      3420
     cttcaggcta cggagcgtag attggcgaaa aacgcagatc ttcgtacgca atactgcgcc      3480
     ttcatggcgg agtactttca gcttgggcat atgagcaagg tcgagaatgt cccaggttcg      3540
     gtgaaacgct gctatctgcc acaccatcca gtagtgaagg aagccagtac taccaccaag      3600
     gttcgcgttg tattcaacgc ttcgagtgaa acgtccacaa gggtgacgtt gaacgatgcg      3660
     ctactggtcg gaccgatcat tcaagatgat ctgcgatcaa tcatcatgcg gagccgaacg      3720
     aaacaggtga tgcttgtcgc ggacgttgag aaaatgttcc gccaaatcct ggttcgtgaa      3780
     gaagatagac cgctgcaatc gattctgtgg aggtcatcac cggaggagga aatcagcacg      3840
     tacgagctga acaccgtcac ctacggaact aaaccggcac cctttttggc gactagggtc      3900
     ctgaagcagc tctcggatga tgaggaagga agatttccgc tggcggctaa ggcagtccgg      3960
     gaagatacat acatggacga tgtgattact ggttcgaacg acgtggatga agctgtgcag      4020
     ttgagggtac agctgcagga acttatgaat gccggaggat tcaggcttcg taaatgggct      4080
     tccaattatc cagaggcgtt ggatggagtt ggaacggagg atttagccat tcctatcacg      4140
     gagatcagtc tagacccaga cccggcggta aaaactcttg gattgacttg gatgccgaga      4200
     accgacactc tgcgattcca attcacgatt ccagcattag aagacgtaga acccttgacc      4260
     aagcgtaagg ttctatcgac catcgccact cttttcgacc cactaggcct cataggagct      4320
     gcaatcacat cattcaaggt gtttatgcag caattgtgga ccctagaaag cgaggatgga      4380
     aggcgattgg attggaatca accattacct cacacggtgg gtgagacatg gcgaaattat      4440
     caccgacaac taccgattct caacgagatc aggatcaaca ggtgcgttat ggttccacag      4500
     actgaacgaa ttgaccttca ctgcttttcg gacgcctcgg agaaggcgta cggtggatgc      4560
     gtttacgtac ggagtgagga ttcaagcgga aacgttctgg ttcgtctggt cgcgtctaaa      4620
     tcaagagttg tacccttgag ttgccagaca attcccagat tggagctatg tggagcactt      4680
     ttaactgcgg agctgttcga aaaggtcaac caagcaatca gactaccagc agatgtacat      4740
     ttctggacgg attccacgtg cgtcttagac tggttagtag ccactccatc tacttggagt      4800
     ccgtacgtcg gaaatagatg cgcgaaaatt caacggttga cggagggttg gcaatggcgg      4860
     catgttccag gagttcagaa tcccgctgat ctgatctcac gaggaattac accgcagaat      4920
     atctcaggga atcgtttctg gtggcacggg ccggactggc tgttaggaag tccagaagga      4980
     tggccacact caacagtttc atcgaacgcc gaggaggtgg aaaaggaaaa gcgccgaact      5040
     gtaacagtag tcacagcgac aaccgctccg gaatttgtag aggagtatgt tgcgaagttt      5100
     tcatcgtatt cggagatgat tcggactgct gcaatctggc aacgattgat gaagctcctc      5160
     aggaaaccca aggcggagag aagaggtgga tttctctcat cggatgaact taaagatgcg      5220
     gaatatacca tccttcggca agttcagaag gtagccctcg ccgatgaatg gcgggccttg      5280
     tcagaaggag taccagtgtc actaaaatcg tcactacgct ggttccatcc ttacatttcc      5340
     gcagatggtt taattcgtct cggtggccga ttgagacatt cggcagaatc tgaggacttc      5400
     aaacacccaa ttgttcttcc aaaggggcat cggctgactc ggcttctcgt tgagcaatac      5460
     catggaagac tacttcatgc tggacctcag ctgctattga gcaccattcg gctgaaatac      5520
     tggccattag atggaagaag catcgtccgc caggttgttc atcgttgcca caagtgcttc      5580
     agagccaaac cgtctccagt gaagcagttc atgggtgagc tgccggctga gcgagtcacg      5640
     atatcgcgcc cattttcccg gacaggcgta gattttttcg gaccagttta cgttaggcca      5700
     ggtcctagac gtaacgcggt gaaagcgtac ggagccattt ttatatgtct tgcgacaaag      5760
     gctgtccaca tagagctggt ctccgactta tcgacggatc ggttcatcca ggcgttacga      5820
     cggttcgtag caaggcgagg aaagtgtgcc gatatatttt cggacaacgg caccaacttt      5880
     gtgggtgccc ggaaccggtt gcaagagctg ctgcgtttgt tgaaggacgt tggcgttggc      5940
     actttagccc tccaagtggt ccccatttcg gtggcctttg ggaggcagcg gttcgttcca      6000
     cgaagtacca cctgcagaga gtcatcggag acacaccaat atccatagag gacatggtta      6060
     cgctgttggt ccaggtggaa ggatgcctca actctagacc aatcattcca ctctcaaccg      6120
     atcctagtga tttatagcct ctcacgccgg gccattttct aatcggttcg tcaatacagg      6180
     ctctcccaga aaccgacgta accgatgttc agttgaaccg actaaaccaa atagagctgg      6240
     tgcaacggaa ggtccaggat ttttggaagc gttggagaca ggaatacctg agccaacttc      6300
     aaggacgaaa caaacgctgg cgaccgccag ttagtattga agttggaaaa ctggtagtaa      6360
     tctgcgacga caacctgccg cccatgcgtt ggaagttggg cagaatcgag gaaacgcacc      6420
     ccggagctga tggcgtagta cgcgttgtta cgttgaggac cgcttccgga aatctaaaac      6480
     gaccggtgga gaaaatctgc ctcttgccgg aaccaatcct cgagcacgaa ttctactcca      6540
     aatcccaaaa ctaaaatcca tttcccaatc caaaatccat ctcccgtcct agccgaagag      6600
     gagttttttt tttctttctt ttcagaaatt catggaattt cagggtgggt gagaa           6655
//
ID   BEL-115_AA-LTR repbase;    DNA;    INV; 807 BP.
XX
AC   supercont1.79;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-115_AA_;
KW   BEL-115_AA-I; BEL-115_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-807
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.79; Positions 1249315 1250121.
XX
SQ   Sequence 807 BP; 189 A; 172 C; 218 G; 228 T; 0 other;
     tgtttgggcg catcgccccc tagacacgcc agtggaagtt tctgctgttt tgctcatcca        60
     gacagctcgc ccaaaaccca gacggtattg ttcaaccgat ggagtagtcg acggaaggac       120
     aataggtcgt cgcagtccat gctatgccta gacggctacg gatggattga tggacagacg       180
     actcttatct ccatcatgcc catgcgattg ttgctgctgt ccttgtccag cgtattgcga       240
     tgcggagaac atttatccga ggcttggatg cggcgatgat agacaaccaa cgatggctgg       300
     ggtgctctcg cactgaccaa gccgatcgtt gtttctctca gtggatgacg tcactgatat       360
     cgatcatcag agcacggtgg atggatggct tgctctgatg atgatatcaa acgcatccac       420
     ttctcagttc cactttagct acacggcgcg atcggtcgct tatttaaatt gcatacccgt       480
     gaatacagtt aggtttatta cgtagaatat agtaagtagt gatgagtgag aactattggt       540
     tttatttgaa cggtacgaac tgaaattccc gcgttcgctc ggattggctc agggtgtctg       600
     tggttctgct gcgactaaat tgaaggtgat ttgggggcta aaaagagtgt cgtattgtgg       660
     acgatttact ggaatttagt ggaattgtac gattgagtgt cggtgattgc gccaatttgt       720
     gaccagaatt ttactgtcgg ctactggagc ctaatcgaaa tcaaggactt ttcggctatt       780
     aatcgaaggt gggttccgga tccgaca                                           807
//
ID   BEL-116_AA-I repbase;    DNA;    INV; 6337 BP.
XX
AC   AAGE02029143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-116_AA_;
KW   BEL-116_AA-LTR; BEL-116_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6337
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029143; Positions   15761   22097.
XX
CC   Positions [5197-5778] - Integrase core
CC   'AGTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           817..6207
FT                 /product="BEL-116_AA-I_1p"
FT                 /translation="MEGGSSNSAAGNARMREQLTTRRTTLLAQLNRAEQFV
FT                 AKYDAGRDELEVPLRMENLDVLWASLEEVQAALEDLETSSEGKTANLEVRA
FT                 SFEPKLFRIKANLKAKLPPPIIPQASRPDNPSRVPSTLSSLKLPTISLPEF
FT                 DGDYRQWLTFHDTFQALIHDNDELPVIQKFHYLRAALKGEAAQLIESIAIS
FT                 AANYPLAWDSLISRYSNEYLLKKRHLQDLMDVPRMKKETAAALHSTLDEFQ
FT                 RHIKILKQLGEPTDAWSTLLEHLLCSRLHDDTIKAWEDHAASVDDQSYSCL
FT                 VEFLEKRVRVLESISANHHGVQSTSASQPSGPNFRKPFFKMASHSVTENSF
FT                 PKCHACDNRHLLVKCPRFMSMAVAEKLRLVNSKRLCVNCFRQDHFARDCSS
FT                 NYTCRVCRKRHHSLLHLGFASGSNSTNPDPPSNQSHGNSSAAVASTSSQIS
FT                 DHRRVQSNPAITKSNDVQKSNVARDAAPTAFLLTVVLKIVDVYGKEHYARA
FT                 LLDSGSQPNLITDRLAQLLRLKRQRSNVQVQGIGEQPEYSNVSVTTEVRSR
FT                 KGDFARNVTFLVLKKLTSSLPSCSVSVDHWKLPKDLFLADPGFNHSSDVDL
FT                 ILGSQYFFDCFPTAARIQLSDTLPILVDSEFGWIVAGGTYLVPPSMEAVCC
FT                 KTVTVSVDPLEECMEKFWKIEELPTRSTYSVEEKACEDHYVSTVSRTEEGR
FT                 YVVRYPKRENFITLIGESKSTALRRFALLERRFFKNPELRESYESFMKEYL
FT                 ALDHMRPVQEEKDATLSYYLPHHPVIKEESTTTKTRVVFDGSSKTSSGYSL
FT                 NDALCVGPVVQDDLLTLVIRFRKYPVALVADIAKMYRQVLIHPEDAPLQRI
FT                 VWGSSPSQPPSSFELQTVTYGLAPSSFLATRTLQQLAVDEGHAYPLGKPAL
FT                 QKSFYVDDFIGGAESVPEAIQLREELTDLLAKGGFPIRKWTSNKLEVLQGL
FT                 DADCIGTQSSVRFDPDETVKTLGICWEFERDQFRFHYHVSQNIIRATKRSI
FT                 LSAISQLFDPLGLVAPIVVRGKMLMQELWLTACAWDDDVPDPLKQKWESFH
FT                 HQLPKLSEFRIPRYAFQQDSLVQLHTFADASEAAYGACTYARSVDSEGRVR
FT                 IQLLAAKTRVAPLKRLSLPKLELCAAVIAAQLHVHITKALEMNIACSFFWS
FT                 DSTVTLQWLKSPPNTWKTFVANRVSEIQTTTHGARWNHVAGSQNPADLLSR
FT                 GMIVEDFLERALWTTGPDWLSRSEDDWPISKQIDSAEANSERKPAISAVAR
FT                 ADSKYNPLFSRYSQFSRLTRIVAYCMRFVENARSKSRTRPVAFIGPNPSLS
FT                 LTVEQLSHARNKLIVLAQADSFQEEIKDLEQNRPLKRQSSIRLLHPFLDQK
FT                 GVLRVGGRLRLAQRSYDFKHPALIPSFHPLAKLIASYFHTKLIHGGGRLTL
FT                 AAMREEYWPVHGRRLVRSVIRNCIRCARANPVPVRQQIGQLPAARVTPSRP
FT                 FAVTGVDYAGPVYLKAIHKRASPTKAYICLFVCFTTKAVHLELVSDLSTPA
FT                 FLTALRRFVARRGRPSHIHSDNGKNFIGAKNELHQLYRMLANHKEVEKIQR
FT                 VCAEDQITWHLNPPKAPHFGGLWEAAVKVAKSQLYRQLGHSHLSFEDMSTI
FT                 LAEIEGAMNSRPLVPMTEDPDDCSAITPAHFLIGTSMHAIPDPDVSEINMT
FT                 RLAHHQRLQHLFQQFWHHWRTEYLQELQRDTTRCQSNNEIRPGRLVVLVDE
FT                 FQHPTRWPLARIEAVFPGADGLVRVVKLRTSKGIFTRPTTKICLLPTEAVN
FT                 AEGTQQFNEIRDEDQPAENNEGIQKV"
XX
SQ   Sequence 6337 BP; 1632 A; 1658 C; 1461 G; 1586 T; 0 other;
     ttttctggtg ccgtgaccag gatcgtgggc tgcaccattg ttattctttc gacccagcta        60
     gtgagagctg tgacctagca gccatcatgt tacaaaaccc acgctacccc tagtgaaaat       120
     cgccattgca gttgaagata gacgccgtcc ttgcatgggt attgtgcaga tgccatttgc       180
     atgtcgctat tatcaccatt gttcctgatc cacgttgctg cgattgaaat atttcaaggc       240
     ctatttgata taggtacaag gtaatgtacc tctccaacgt ttccaagcgc atctttaggt       300
     gcttttagat gtgtttttcc ttttgcatga tttcttctgc atcggtgctg ctagcgtgat       360
     ataccatcta gacgatcact cccaatacga aaccatcctc gccgaccatt cacacccgtc       420
     ggcatacatt tgattcgtta agctgctggc cgtagttacc tgctacatgg tggcggccat       480
     tcggaaacac atcgacgaac cattcccgtt tttgaagaca cctgcatgct atagctgagt       540
     atatttgcat gccatctcag cgatcatccg cactcattct ggaataaatc accccaactt       600
     ccctacactg gacccgtgtg aggctccaaa tctgttcctg cgctcctgat tttgattata       660
     caaggctcga atagccttgg caaaggttag tacctgtcca agttgcctat ttgtctccat       720
     ccaggtctac ctggtctcta tttgccaggc actttccgac ttccttgtcg atactgagca       780
     ccgtcaacag catcgagtgt cgatccatcg agcaagatgg agggtggcag ttccaactcg       840
     gccgcaggca acgcacggat gcgagagcag ctcaccaccc ggaggacgac attgttggcg       900
     cagctaaacc gtgcggagca gtttgtcgcc aaatatgatg ccggacggga tgagctcgag       960
     gtaccactac ggatggaaaa tctggacgtt ctgtgggcat cgctcgagga ggtgcaagct      1020
     gcccttgaag acctggagac aagcagtgag ggtaagaccg ccaaccttga agtccgtgct      1080
     tcgtttgaac cgaagctttt ccgaattaaa gccaatctaa aagccaaatt gcctccgcca      1140
     atcattccac aagccagccg ccctgataac ccctctcgcg taccctccac cttgtctagt      1200
     ttgaagttgc ctaccatttc gctcccagag tttgacggtg attaccgtca gtggctaacg      1260
     tttcacgaca cgtttcaagc cctcattcac gacaacgacg agttgcccgt gatacaaaag      1320
     tttcactact tgcgcgctgc gctgaaaggt gaagctgcgc aactgatcga atcaattgcg      1380
     atcagtgctg caaattatcc tctagcatgg gactcattaa taagccggta ttctaacgaa      1440
     tatttattga aaaagcgaca tctacaggac ctgatggacg ttccacgaat gaagaaagag      1500
     actgcagcgg cgttgcactc caccttggat gaattccagc gacacatcaa gatccttaag      1560
     caactgggcg agccaacgga tgcgtggagt acattgttgg agcacctgct gtgttcaaga      1620
     cttcatgatg acaccattaa ggcctgggag gaccatgcag catccgtcga cgaccagagc      1680
     tactcctgtt tggtcgagtt tctggagaaa cgggttcgag tgctcgaatc gatttccgcc      1740
     aaccatcatg gtgttcaatc tacttccgct tcccagccga gcggaccgaa tttccgcaaa      1800
     cctttcttca agatggcatc ccactccgta acggaaaatt cgtttcccaa gtgccatgct      1860
     tgtgacaacc gtcatctctt agtgaaatgt cctcggttca tgtcaatggc cgtcgccgag      1920
     aagctgcgtc tcgtgaattc caagcgcctt tgtgtaaatt gcttccgcca agatcacttc      1980
     gcccgtgatt gctcatcgaa ttacacatgt cgagtgtgta gaaagcgtca ccattccctc      2040
     ctgcatttgg ggtttgccag tggatccaat tcaactaatc cagatcctcc ctccaaccaa      2100
     tcccatggta actccagtgc tgcagtagct tccaccagct cgcagatcag cgatcaccgc      2160
     cgagtacagt ccaatccagc aatcacaaaa tcgaatgacg tccaaaagag caatgttgcc      2220
     cgtgatgccg ctcccaccgc gttcctgctt acagtagtcc tgaagatcgt tgatgtatac      2280
     ggaaaggaac actatgctcg tgctcttctc gacagtggtt cccaaccgaa tttgattacg      2340
     gatcggttgg ctcagctact gagactaaaa cgacagaggt ccaacgtgca ggtgcaagga      2400
     attggggaac agccagaata ctccaacgtg tccgtaacca ccgaagttcg ttcgaggaag      2460
     ggtgactttg ctcgaaatgt tacgtttttg gttctcaaaa agttgacttc cagtcttcca      2520
     agttgttccg tgtcggtgga ccattggaaa cttccaaagg atttgttctt ggcagatccg      2580
     ggcttcaacc attccagtga tgtagatttg attctaggat cgcaatattt cttcgattgc      2640
     ttccctacgg cagctagaat ccagctgtcg gacactctcc cgatattagt tgacagcgaa      2700
     tttggttgga tcgtagcagg cggtacctat cttgttcctc catccatgga agcagtgtgt      2760
     tgcaaaacag ttacggtttc agtggatccc ctcgaagaat gcatggagaa attctggaaa      2820
     atcgaagagc tgcccaccag atccacatat tccgtagagg agaaggcatg cgaggaccac      2880
     tacgtatcaa cagtttcccg aaccgaggaa ggacgttatg tggtgcgtta cccaaagcgc      2940
     gagaacttta tcaccttgat cggggaatcc aaatccacgg ctcttagacg ttttgcactg      3000
     cttgagcgac gctttttcaa aaatccggaa ttgagggaaa gttacgaatc cttcatgaag      3060
     gaatatttag ccctggacca catgcgccca gttcaggaag agaaggacgc cacgctctct      3120
     tattaccttc ctcatcatcc ggtcataaaa gaggagagca ccaccaccaa gacacgcgtc      3180
     gtcttcgatg gatccagcaa aacctcatct ggttactcct tgaatgatgc gttgtgcgta      3240
     ggtccagtag tccaggacga tctgctaact ctggtgatcc gttttcgaaa atatcctgtg      3300
     gctcttgtgg cggacattgc gaaaatgtat cgtcaggtgc ttattcatcc cgaagatgca      3360
     ccactccaaa gaattgtttg gggatccagt ccttcgcaac ctccatctag ttttgagctg      3420
     cagacggtaa cttatggcct cgccccttca tccttcctag ccacccgcac cctgcagcaa      3480
     ctcgcagtcg atgaaggcca tgcttatcca ctcggcaaac ctgctctcca aaaatccttc      3540
     tatgtcgacg attttatagg cggagccgaa tctgttccgg aagctatcca gttacgtgag      3600
     gagctgacag acctgctagc gaaaggagga tttccaattc gtaagtggac gtccaataaa      3660
     ttagaagttc tgcagggact tgacgccgat tgcattggca ctcaatctag tgtccggttt      3720
     gatccagatg agaccgttaa aacattgggc atttgttggg aattcgagcg agatcaattt      3780
     cgattccatt accacgtgag ccagaatata attcgagcaa ctaaaagatc catcctttcc      3840
     gcaatttctc aactatttga cccgttagga cttgtggctc caatcgtcgt gcggggtaaa      3900
     atgttaatgc aggagctgtg gttaactgcc tgtgcctggg acgacgatgt tccggatcct      3960
     ctgaagcaga aatgggagag cttccatcac caacttccga agctatcaga atttcgaatt      4020
     ccacgctacg ccttccagca agattccctt gtgcagcttc acaccttcgc ggatgcatca      4080
     gaagccgcct acggagcttg tacttatgca cggtctgtgg actcagaagg aagggtgaga      4140
     atccagctgt tagctgcaaa aacccgggta gcacccctca aaaggttgtc actacccaaa      4200
     cttgaactat gtgccgcagt tattgcagct caactccacg tccacatcac caaagcgctg      4260
     gaaatgaata tagcgtgctc atttttttgg tctgattcca cggttacgct ccaatggctg      4320
     aaatcccctc caaacacgtg gaagacattt gtagcaaaca gagtgtccga aatccagacg      4380
     acaacccacg gagctcgatg gaaccacgta gctggctcac agaaccctgc tgacttactc      4440
     tctcgtggaa tgattgttga agacttcttg gaacgtgcgc tttggacaac aggaccagat      4500
     tggctatccc gctccgaaga tgattggcca atttccaagc agatcgactc cgccgaagca      4560
     aatagtgaac gcaagccagc aatatccgca gtagctcgtg ctgattcaaa atataatccg      4620
     ctattttccc gctattcgca gttctctcga ttgacccgca tagtagcata ctgcatgcga      4680
     tttgtagaaa acgctcgatc gaagtcccga acacgtcctg tcgcttttat tggtcccaat      4740
     cctagcctat cgctaaccgt tgagcaactt tcgcatgcta gaaacaaatt aattgttctc      4800
     gcccaggcag attctttcca agaagagata aaagatctgg agcaaaatcg tccactgaaa      4860
     aggcaatctt ctatacgtct tctgcatcca ttcctagacc aaaaaggtgt gttgagggta      4920
     ggggggcggc ttagattggc acaacgttcc tacgatttca aacacccagc cttgattccc      4980
     agtttccatc cccttgctaa actcatagca agctatttcc acacgaaatt gattcacggt      5040
     ggcggccgat taacactggc agcaatgcga gaagaatatt ggccagttca tggtagacga      5100
     ctggtgcgga gcgtcattcg caactgcatt aggtgtgccc gagcaaatcc cgtcccggtt      5160
     cgtcagcaga ttggccaact tccagctgcc cgagtcaccc caagtagacc cttcgccgtg      5220
     acaggggtag actacgctgg gcccgtttat ttgaaagcca tacacaaacg agcgtcgcca      5280
     acgaaagcgt atatatgtct gttcgtttgt ttcacaacga aggcagttca tttagagctg      5340
     gtgagcgatc tttcgacacc cgctttcctc actgctcttc gtcgcttcgt tgcacgtcgt      5400
     ggccgaccat cccacataca ttcagacaac ggcaaaaact ttatcggagc gaagaatgaa      5460
     ctgcaccagc tgtaccggat gttggctaac cacaaggagg tcgaaaaaat ccagcgagtc      5520
     tgcgccgaag atcaaatcac ctggcatctg aacccgccca aagccccaca ctttggcggg      5580
     ctctgggagg ctgccgtgaa ggtagcaaaa tcgcagttat accgtcaatt gggacattcg      5640
     cacctgtcat ttgaggacat gtccacaata ctggcggaaa tagagggagc catgaattcc      5700
     cgcccactcg taccgatgac tgaggatcct gacgactgtt ctgccataac gccagcgcat      5760
     tttcttatcg ggacgagtat gcatgcgata cccgatccag acgtcagcga aatcaacatg      5820
     actcgtctgg cacaccacca acgattgcag cacttattcc aacagttttg gcatcattgg      5880
     agaacggagt atctccaaga actccaacgg gataccacta ggtgtcagtc caacaacgag      5940
     atacgccctg gcagactggt tgtgctggtt gacgagttcc aacaccctac tcgttggcca      6000
     cttgctcgca tagaagctgt ttttcctgga gctgatggtt tagttcgtgt agtcaagttg      6060
     cgaacatcga agggcatctt tacacgacca actacaaaaa tatgcctttt acctacagaa      6120
     gcagtcaacg cagaaggcac acaacaattc aacgaaatac gagatgaaga tcagccggcc      6180
     gaaaacaacg aaggcatcca aaaggtttaa atgagagaaa tttgtaacgt agtgtgtaag      6240
     caattatgaa aaatgaattc gtttgtaata gtttgtagcg ttagtattag ctgaagttat      6300
     ttgatttgaa atttgttaat ttcaaaggtg gcggcga                               6337
//
ID   BEL-116_AA-LTR repbase;    DNA;    INV; 382 BP.
XX
AC   AAGE02029143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-116_AA_;
KW   BEL-116_AA-I; BEL-116_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-382
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029143; Positions   15379   15760.
XX
SQ   Sequence 382 BP; 98 A; 94 C; 75 G; 115 T; 0 other;
     tgttctgttt caccgaaatt atctcttata gataagggtc cgatacccct tatcgagtgg        60
     agagtttctc atactctctc tcagcacacg ataggagatc gggtgatcaa catcccgatt       120
     gtccactcag tttttagttt agcgctagcc accggtgaag gcaaacgtcg gcaaataaaa       180
     attacttttc gcactgtata cctcttgttc gacctcaata aaagtttaat aacttacgcg       240
     agtgttacaa tagtgcttcg tagtgaaagt tatatcactt ccgactgctg cttagattta       300
     tggaccagct tgtaccacca tcaccttgct tctggtgatt tgcctgattc cggacctagg       360
     tgagccacga cctgcccaaa ca                                                382
//
ID   BEL-117_AA-I repbase;    DNA;    INV; 5511 BP.
XX
AC   supercont1.311;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-117_AA_;
KW   BEL-117_AA-LTR; BEL-117_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5511
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.311; Positions  488463  482953.
XX
CC   Positions [4472-5065] - Integrase core
CC   'GATAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           576..1640
FT                 /product="BEL-117_AA-I_3p"
FT                 /translation="MADARTKQQLINRRTTLIASLGRTEQFVENYAAERDQ
FT                 GQVKLRLDNLDTVWMGLEDVQTQLEDLETTNEGMAQNLYYRSHNETRYFAI
FT                 KAALQSYLPIVPSSVSAIPQSAVSGLSSIKLPTITLPEFDGDYNQWLTFHD
FT                 TFVALIHSNPEVHDTQKFHYLRAALKAEAAQLVESIGISSANYTIAWQTLV
FT                 SRYANDYLLKKRHLQALLDCPRMKKESASALHSLVDEYERHTKTLRQLGEP
FT                 IDSWSTMLEHLLCLRLDDGTLKAWEDFATTAETPDYRCLIEFLQRRLRVLE
FT                 SMSVNHQAQPASNSQPPAFRRPPFYKTVSHAAAEAVPRKCYSCDQQHPLFQ
FT                 CPQFDKMSSPIA"
FT   CDS           3767..5422
FT                 /product="BEL-117_AA-I_2p"
FT                 /translation="MTVDAFLGSNLWHHGPEWLTLSEEDWPVGAQQQKAPE
FT                 DILERRETVAAVQNKQDVNPIFCTSSSYSRLIRVTAYCFRFIKACLRQTSS
FT                 GPAGKAAFVTVDEMEMIRTKLVRLAQADVFEEEIRYLGKGKAVPKRSHLRL
FT                 LSPFIDSEGIVRVGGRLRLAEQPYLTKHPILLPSSHPFTRKIAHHFHLKLL
FT                 HGGGRVTLAAIRQEYWPIQGRRLVNSVLRTCFRCARASHTPTKQQTGQLPL
FT                 DRITPITGIDYAGPVYMKPIHKRASPTKAYISVFVCFATKAVHLELVSDLS
FT                 TPAFLTALRRFIARRGCPLHIHSDNGKNFQGAQNELHQLYELMQKEKSSGK
FT                 IATYCSSQWIQWHMAPPKAPHFGGLWEAAVKIAKKHMHRQLGNAMLSFEDM
FT                 STVLAQIEAAMNSRPLTPLNEDPNDLAVLTPAHFLIGTTMTALPDVDVSNI
FT                 DISRLDHYQRLQHRAQQFWHQWKTEYLQELQKENRHNALNTAIQPGRMVVV
FT                 VDEFLAPVKWPLARIINTIPGPDGLIRVVDLKTCKGIIRRPVMKICLLPLD
FT                 ETIDI"
FT   CDS           2239..3315
FT                 /product="BEL-117_AA-I_1p"
FT                 /translation="MVRLPRHPDFDHMLGESKQAALRRFHHLENRLNKEPA
FT                 LKEEYHSFMLEYLTLGHMRLVPPSNLESHQSYYLPHHAVVKEASTTTKVRV
FT                 VYDGSAKTTTGHSLNDALLVGPIIQDELLTLIIRFRKYPIALVAEIAKMYR
FT                 QVLLHHEDVPLVRILWRFNSSEPISVYELLTVTYGLSPSSFLATRTLQQLA
FT                 ADEGESYPLGGPALKKGFYVDDYIGGAETEEEAICLRNELDDLLEKGGFQL
FT                 RKWASNNPTVLEGLEPSRIGTQRALKLGNEESIKTLGVSWEPRTDQLRFDS
FT                 MQVTTRERSTKRSILSAVSKHFNPLGLTAPVIIRAKMLLQELWLQPCGRRS
FT                 KRHYSSEMGHLLRRTS"
XX
SQ   Sequence 5511 BP; 1484 A; 1479 C; 1166 G; 1382 T; 0 other;
     tattttggtg ccgtgaccag gatcaggttt cctcccagat tttccgccat cacaatacgg        60
     actgcgacgc tattcccgcc atagttctgt accattgtgt gccccatcgg cattcataag       120
     atcgccatct tccccgggtc cttattgtga ctctccgcca tcgagaatta ataggattaa       180
     tacaaggcct agtaccgcta ggcacacggt acgtagaatt ccaagttgtg caggaagtct       240
     cgcgggtgtg tttagatttt tttcgatttt ctcccgattc cgtgataccg cttcaaccga       300
     cccgtttatc cggatacgct acacgctatt gaggtacccc accggcttat attagccacc       360
     aattccggcc gaagtaacca ccactgaatc ctgccgtgct ctgtgtctcc gaatcatcgt       420
     tttaaccgcc agttccagga gttttggaat agatatacaa ggctcaatac tagccttgag       480
     aaggttagta ccgctccaac ttctctaccc tatttgtccg gctctaccgg gtctttcttt       540
     gtgtcatccc atctagagca tatatccaag tcaagatggc ggatgcacgg acgaagcaac       600
     aactcatcaa ccggcggacc acgctcattg cttcgttggg cagaacggag cagttcgttg       660
     agaactacgc tgctgaacga gatcaaggtc aggtgaaact gcgtctcgat aatttggata       720
     ccgtgtggat gggactggag gatgtacaaa cccagctaga agacctcgaa acgaccaacg       780
     aaggtatggc tcaaaacctt tattaccgat cccacaacga aacccgctat ttcgcaataa       840
     aagctgctct ccaatcgtac ctccccattg taccttcttc cgtaagcgca atccctcagt       900
     ctgctgtctc tggcctctcg agtatcaagt tgccgaccat tactctgccg gaattcgatg       960
     gtgattacaa ccagtggctg accttccacg atacgttcgt ggccctgatt cattctaacc      1020
     ccgaagtgca cgacactcag aaattccatt atcttcgcgc ggcgctcaag gcagaagccg      1080
     ctcaactagt agaatccatt ggtatcagct ccgccaatta cacaatcgcc tggcaaactc      1140
     ttgtttctag atacgccaac gactatctcc tgaaaaaacg ccacttgcaa gctctactcg      1200
     attgcccccg catgaaaaaa gaatccgcct ccgctttgca ttctcttgtc gatgagtatg      1260
     agcgtcacac caaaacccta cgccagcttg gagagcctat cgattcttgg agcactatgc      1320
     tcgagcatct actatgcctt cgccttgacg acggtacact taaagcatgg gaagacttcg      1380
     caacgactgc cgaaacaccc gattaccgat gtctaattga gtttcttcag cgtcgccttc      1440
     gtgtgttaga atcgatgtct gttaatcatc aagcacagcc agcatctaat tcgcaaccac      1500
     ccgcttttcg ccgcccaccg ttctacaaaa ccgtttctca tgccgccgca gaagccgttc      1560
     ctcgaaaatg ctattcatgc gatcagcaac atccactgtt ccaatgccct cagttcgata      1620
     aaatgtcctc gccgatcgcc taaatctggt gaacaacaat cgcctttgcc ataactgctt      1680
     ttgccaaaat catattgctc gcaactgcca gtgaaaatta tcttgccgat tttgtagaaa      1740
     acgtcaccat tcattactcc accctggata ccacccaacc gatgctgtgc agcatccctc      1800
     tacatcgcgc ataacaacat caacatcgaa gcccaccgaa aagcgagata ccataacgtc      1860
     aaaccagcga acaccaacat ctacctacgc tgtcaccgcc caatcgagca acccatcaca      1920
     acaatccaat gcgaatgttt tgctgtctac ggtcgtctta attgtttacg actctgatgg      1980
     atcggcgcac cctgctcgag caacaatcct gtccttattg ataccatttt tggctggata      2040
     gtcaccggta ggaaccaaaa tgcatacgaa actctcccag tagcttgcaa tattaccctt      2100
     gccgatcccc tccacaaagc ccttgaacgt ttctggagca ttgaggaaat agatggtaat      2160
     cgcaaatatt ctttggaaga acaacagtgt gaaactcact tcactgctaa tgtttcccga      2220
     actccagaag gccggtatat ggttcgcttg ccccgtcatc cagactttga ccatatgctg      2280
     ggagaatcaa aacaagccgc acttcgtcgc ttccaccatc tcgaaaatcg tctcaacaag      2340
     gaacccgccc tgaaagaaga gtaccactct tttatgctgg agtatctaac cctaggtcat      2400
     atgaggctgg ttcctccgtc caatctcgaa tctcaccagt cttattacct acctcatcat      2460
     gccgttgtaa aagaggccag tacgaccaca aaggttcgag tagtatacga cggatccgcc      2520
     aaaacaacta ctggtcattc cctaaatgat gccctgctcg taggaccaat catccaagat      2580
     gaattactca cccttatcat ccgttttcgg aaatacccaa tagcccttgt cgcggaaatt      2640
     gctaaaatgt accgccaagt tttgctacac catgaagatg ttccactagt tcgaatcctg      2700
     tggcgcttca attctagcga acccatttcc gtttatgagc tcctaacggt aacctatgga      2760
     ttgagtccat catcgttcct tgctactcgt accctccagc aacttgctgc cgatgaaggg      2820
     gaatcatacc cactaggtgg tcccgcattg aagaaaggtt tttatgtgga tgattatata      2880
     gggggagcag agacagagga ggaagcgatt tgcctacgaa acgagttaga tgacctgcta      2940
     gaaaaaggag gatttcagct aagaaagtgg gcgtcaaaca acccaacagt actagaaggc      3000
     cttgaaccat cacggattgg aacccaacgc gcattgaaat taggtaacga agaatccatc      3060
     aagacccttg gagtcagttg ggaacccagg accgatcaac tgagattcga ttccatgcaa      3120
     gttaccacta gagagcgatc aacgaaacga tccattctgt cggctgtatc aaaacacttc      3180
     aacccgctcg gtcttacagc acctgtcatc attcgagcaa agatgttgtt gcaggagctt      3240
     tggttgcaac cctgtggacg acgaagtaag cgacactatt caagcgaaat gggacaccta      3300
     ctgcgccgaa cttcctaagc tttcaacatt ccgggttggt cgatacgcat ttttgccgaa      3360
     ttctacgatt catttgcaca ccttcgcaga tgcatcccag catacatacg gcgcatgcat      3420
     ttatgctcgt tccactaatg tcgaaggtaa aatacacgtt cagctgattg cttcgaagtc      3480
     gaaagtagcc ccgcttaaac gattgtccat tcctcggctg gaactcttgg cagctgttct      3540
     tgcagtgaga ctgcatcaaa aggttctcct ggcactggat attcctatct cagcctccta      3600
     tttctggtca gattcaaccg ttgttctcga atggttgcgt gcacccccat acacttggca      3660
     cactttcgtt gcgaatcgcg tttccgaagt ccaaaccact gttcctgaat cgcgttggca      3720
     tcacgtcgct ggaaagcaaa atcctgcgga tctcgtatca agggggatga cagttgatgc      3780
     ttttcttgga agcaatcttt ggcaccatgg acctgagtgg ttgacacttt ccgaggaaga      3840
     ttggcctgtt ggagcgcagc agcagaaggc acctgaggac atcctagaac ggcgagaaac      3900
     ggtggcggct gttcaaaaca aacaagatgt taacccaata ttttgcacgt cctcctccta      3960
     cagcagattg attcgtgtga cagcatattg ttttcgtttc atcaaagcct gtcttcgaca      4020
     aacgtcaagt ggccctgcag gaaaggcagc attcgtcacc gtggatgaaa tggaaatgat      4080
     tcgcacaaaa ttagttagac tggcccaagc agatgttttt gaggaagaaa taaggtactt      4140
     ggggaaaggt aaagcggttc ctaagcggtc acacttacgc cttctaagcc cattcatcga      4200
     ttctgaaggt attgttagag ttggaggtag attgcgctta gctgagcagc cttacttgac      4260
     caaacatccc atcctcctac ccagttccca tccatttaca cggaaaattg cccatcattt      4320
     ccatctgaaa ttgttgcacg gtggcggccg cgtgacatta gcagcaattc ggcaggaata      4380
     ctggcctatc caaggacgcc gtttggtcaa tagcgttttg agaacctgtt ttcgttgcgc      4440
     tcgtgcttca catacaccca ccaaacagca aacaggacaa ctaccattag atcgaattac      4500
     tccgatcacc ggaattgatt atgccggacc ggtctacatg aagccaatac acaagcgagc      4560
     ttcaccaact aaggcctaca taagtgtttt tgtatgcttc gctaccaagg ccgtgcatct      4620
     agaactcgtg agcgacctct ctaccccagc attcctcact gccctgcgga gattcatagc      4680
     tcgtcgcggt tgccctctac acatccattc cgataacggg aaaaattttc agggtgccca      4740
     aaatgaactt caccaattat acgaattgat gcagaaagag aagtcgtccg gaaaaatagc      4800
     cacctactgt tcaagccaat ggattcagtg gcatatggcg ccacctaaag ccccacattt      4860
     tggtggattg tgggaggcag cagttaaaat agctaaaaaa cacatgcatc gacaacttgg      4920
     caacgcaatg ctctcgttcg aggacatgtc tactgtgttg gcacaaattg aggcagcaat      4980
     gaattcccgg ccgttaactc cactaaacga ggatccaaac gacttggctg tgctcactcc      5040
     agcacacttc cttattggca ctacaatgac cgcactccca gatgtcgacg tcagcaatat      5100
     agatatcagc cgattggacc actatcagcg tctccagcat agagcccagc aattttggca      5160
     tcagtggaag acagaatact tgcaggaact ccagaaggaa aatcggcaca acgcactaaa      5220
     cactgcaatc caacccggaa gaatggtcgt cgttgttgat gaatttctgg ctccggtgaa      5280
     atggccgctc gcaagaatca tcaataccat acccggacca gatggactca tccgtgtcgt      5340
     cgatctgaaa acctgcaaag gaatcatccg tcgtcctgtt atgaaaattt gtctgttgcc      5400
     gttagatgaa accatagata tatagaatgt aaacattttg atttgtttat gcttgaattg      5460
     ttatgacagg agttaggcaa agtgaaattg aataatttca ggtggcggct a               5511
//
ID   BEL-117_AA-LTR repbase;    DNA;    INV; 348 BP.
XX
AC   supercont1.311;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-117_AA_;
KW   BEL-117_AA-I; BEL-117_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-348
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.311; Positions  482952  482605.
XX
SQ   Sequence 348 BP; 118 A; 72 C; 65 G; 93 T; 0 other;
     tgacagttct caaactgatc atgacccaaa cacaggcagt gctgtcagtc ataagcctta        60
     tgctacaaac ttgcatgcaa gtgcagcatt aaaattcaat tgcgcaatac atatgttata       120
     cacaacatag gataaataga cgatgaattt gtaataaagt cagttagtaa aagttcaacc       180
     tccgaagaat aaagttcatt acaataagaa gtgtttctaa atcaaacata agttttaata       240
     gactctggtg atcttgagtg cccaagcctt gcctaagtgg agtagtgcat tgtgtcctat       300
     tgtgaaccca gagtgtgtcc cgccggaaat cacgatcctg ccccaaca                    348
//
ID   BEL-118_AA-I repbase;    DNA;    INV; 2776 BP.
XX
AC   supercont1.120;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-118_AA_;
KW   BEL-118_AA-LTR; BEL-118_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2776
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.120; Positions 1281625 1284400.
XX
CC   'ATGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..2776
FT                 /product="BEL-118_AA-I_1p"
FT                 /translation="MSQGRSPKTKSASKAAAEAVKQKQNRDAEQHNWEITA
FT                 DAETLKELSSLSRQRDQVNLKLARVHRALATAQNQLSLPQLKTFLKRVDDA
FT                 YAEFSVVHTKLVAIIPNEAFRQQEEIYIAFEERYDYARTAIEELILDHEPN
FT                 TIKTPTTQPQVIVQQQPLKAPIPTFDGSYANWPKFKAIFQDLMANSGDSDA
FT                 IKLYHLDKALVGNAAGVLDAKVISEGNYQQAWAILTERYENKRIIVETHIR
FT                 GLFDINKMASGSCKELRRLHDECSRHVESLKYLEQEFSGVSDLFLVHIVTS
FT                 AMDQPTRMAWEATQKKGELPTYAQTISFLQTRCQMLENCEIAFPKSSSPLQ
FT                 QRSNPKGQASTKPANVKVYAAGTEPRKKDSCDFCQGPHRNYQCDTISNMPF
FT                 EKRMEKVRASGVCFNCLRKGHSARDCSSTKTCQKCQKRHHTQLHNEEVELE
FT                 PKPSVSLTAQEPKPVTPQRMVFASASTRDSPIMPLFCNYADSSKTVFLLTA
FT                 IVHTLDENDQPYPCRVLLDSGSQVNFVTADLANRLGSTKRRVNIPIRGIND
FT                 VKTVSYDKVTIKFRSRVSDYETQVQCLVTPNVTGIIPAAKIDVSSWSIPFG
FT                 VQLADPEFYKPEKIDMLLGAELFLQLLRPGYIKLNDDFPELRETTLGWVVA
FT                 GVFREKPVASKTQHSLVASIDDTEEIPQQSNIDEVANPNPLPKQICKQCEK
FT                 WKQRRKIRSECDNPNQRNLPPQDAIFRPSSLPYTLRVSDASLKTTAASNPL
FT                 NEPSCTANCEQGSRRTTGFRPVLNVLKNTLRTSRDQKVGRMTREYAEPGKV
FT                 ARSLDAHSNGPIYRRGSIPTKNNESRSPKKPVETSCQPGGV"
XX
SQ   Sequence 2776 BP; 790 A; 773 C; 665 G; 548 T; 0 other;
     tagtggtcct tcgaaccgga tccagtgccg ccccaccgcc gttggaaagg attacgcacc        60
     accgctaccc gacacgtttg tgtggcgctc cagccagaac gtgtaccgcc caaggatttg       120
     atcagtcact accgtcgccg ccgcttgtga attgctgcat accgaccaca taccgcctag       180
     ggagtactct gcaccgccgt tccgacccga cactcgctgc tggtgattct tccgaccaaa       240
     attcgacatg tcgcaaggac gctcaccgaa gaccaagtcg gcttctaagg cagcagctga       300
     agccgtcaag cagaaacaga atagagacgc cgagcaacac aactgggaaa tcactgccga       360
     tgccgaaacg ctgaaagaac tatcatcgct gtcccgccaa cgtgaccaag tgaacctgaa       420
     gcttgcgcgt gtgcacaggg cacttgccac cgctcagaac cagctcagcc tgccccagtt       480
     gaagacgttc ctgaaaagag tggacgatgc gtacgccgag ttcagcgtcg tgcacaccaa       540
     gctggttgcc ataatcccaa atgaggcctt tcgacagcag gaggagatct acatcgcttt       600
     tgaggaacga tacgactacg ctcgcacggc catagaagaa cttattctgg atcacgaacc       660
     gaacaccatc aagactccaa cgacgcaacc gcaagtgata gtgcaacagc aaccattgaa       720
     ggctccaatc cctaccttcg atgggtctta cgccaactgg ccgaaattca aggccatctt       780
     ccaggacttg atggccaact caggagattc ggacgccatc aagttgtacc atctcgacaa       840
     ggcacttgtt ggtaacgcgg ctggagtttt agatgcgaaa gtgatcagcg aagggaacta       900
     ccagcaagca tgggccatcc tcaccgaaag gtacgaaaac aagaggatca tcgtggagac       960
     gcacattcgt ggcctatttg atatcaacaa aatggcttct ggttcgtgca aggagcttcg      1020
     acggcttcac gacgaatgta gccgtcatgt cgagagcctg aaatatctcg agcaggagtt      1080
     ctccggtgtt tccgacctct ttctggttca cattgtgacg tctgcgatgg atcagccaac      1140
     gaggatggca tgggaggcaa cacaaaagaa aggcgagcta ccaacgtatg cccagacaat      1200
     ctcatttctt cagacaaggt gccagatgct ggagaattgt gaaattgcgt tcccgaaatc      1260
     ctcctccccg cttcaacaga gatcgaatcc caagggtcaa gcatcaacga agccagccaa      1320
     cgtgaaggtc tatgctgctg gaactgaacc aaggaagaag gatagctgcg atttctgcca      1380
     aggtccgcat cgcaactatc aatgcgacac aatcagtaac atgccgttcg agaaaaggat      1440
     ggagaaggta cgagcatctg gagtctgttt caactgtctc cgtaagggac acagcgccag      1500
     agactgctca tcaacgaaaa cgtgtcaaaa gtgtcagaag cgacaccata cacagctcca      1560
     caacgaggaa gtagagcttg agccaaaacc cagtgtgtcc cttacagcac aggaacctaa      1620
     gcctgtgact ccccaaagaa tggtattcgc ttcggcttcc accagagact ctccgatcat      1680
     gccgctcttt tgcaactacg ctgactcttc gaagactgtg ttcttgctaa ccgctattgt      1740
     ccacacctta gatgagaacg accaaccgta tccctgccgt gtgctcctgg acagtggctc      1800
     acaggtaaac ttcgtcacag ctgatcttgc gaaccgtctt ggaagtacga aacgacgagt      1860
     taatatcccg atcagaggaa tcaacgatgt gaaaaccgtc tcatacgaca aagtgacgat      1920
     caaattccga tcccgtgtgt ccgactacga aacccaggtg caatgcctcg ttacaccgaa      1980
     cgtgaccgga atcattccag cagcgaaaat cgacgtctca tcttggagca tcccctttgg      2040
     tgttcaactc gctgatccag agttctacaa gccagagaag atcgacatgc ttctcggtgc      2100
     agaattattc ttgcagctgc tacgacctgg ttacatcaaa ctcaacgacg attttccaga      2160
     gcttcgcgaa accactctag gatgggtggt agccggagtg ttccgagaga aacccgttgc      2220
     cagcaagact cagcattcgt tagtcgcatc gatagacgac accgaggaga ttccacaaca      2280
     atcgaacatc gatgaggtag caaatccaaa cccgttaccc aagcagatat gtaagcaatg      2340
     cgaaaagtgg aaacaacgcc gaaaaatacg aagcgaatgc gacaacccga atcaacgaaa      2400
     ccttcctccg caagacgcca tcttccgacc ttcaagtttg ccctacacac ttcgggtatc      2460
     cgatgctagc ctgaagacaa ccgccgctag caatccgctc aacgagccat catgtactgc      2520
     caattgcgaa caaggatcga ggagaacgac aggatttcgc cctgtattga acgtgctgaa      2580
     aaatacacta cgaacatcgc gcgaccagaa ggtaggacgc atgacacgag agtatgctga      2640
     accaggcaaa gtagcacgct cactcgatgc gcattcgaat ggacctatct atcgacgagg      2700
     aagcattccg accaagaaca acgagtcacg atcaccgaag aaacctgttg aaacttcgtg      2760
     tcaaccgggg ggagta                                                      2776
//
ID   BEL-118_AA-LTR repbase;    DNA;    INV; 580 BP.
XX
AC   supercont1.120;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-118_AA_;
KW   BEL-118_AA-I; BEL-118_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-580
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.120; Positions 1281045 1281624.
XX
SQ   Sequence 580 BP; 168 A; 149 C; 137 G; 126 T; 0 other;
     tgttccgtac ggaacgtgcg gaaaaagcgc aaacgacaat tcgtttacac acccaatccg        60
     aatgtagcga aacactcacc gaatagagcc cccagcgtga cccagcctag ctacgtcact       120
     gagatcgcga gttacttcga ttgatgtaag ttccacccgt gagtgcccgt gagtgattcc       180
     cgccatcatt gtcatcgtca tcgaggtact cactggcact caccacaaca gtaacgaaac       240
     gatgagtgca gacgcgtcgc gaatgttcca cgcgcgtctg gaacacgtgt ccggctagag       300
     cgcgaacttt ctagaacgtg tacgcgctag tataaatacg tgaccatctc acccgtacga       360
     tcagtattgt tttaaccctc gcgcgcgtat aatcgagtaa aagtaaaagt gaattaacag       420
     tgcaagtaaa gtgtaaatag ttaagtgcag agtgaataaa gtgaagtagt atagtgtagt       480
     gattgaaaag tgtggtgtat cctttcatcc gaaatcccga cccacgatat acagtccacc       540
     ccgacccgac cggagttggc cacggtgaac agcgccaaca                             580
//
ID   BEL-119_AA-I repbase;    DNA;    INV; 6042 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-119_AA_;
KW   BEL-119_AA-LTR; BEL-119_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6042
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions 1249929 1243888.
XX
CC   Positions [5104-5661] - Integrase core
CC   'CGGTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..1597
FT                 /product="BEL-119_AA-I_2p"
FT                 /translation="MRAAHDCGACDAPNSADVGMVACDGCGVWYHYACAKV
FT                 SPGVQHRSWRCSKCPPEPIPGTTGAKKKTNKKQPASLTVLVAPSEIHKSSD
FT                 ASQRKTSEKSKNSDKSKTLVVPILAEGDNTTPKKHPEIPAVDKSAHGEMRS
FT                 SKSSTSTARARAQLALQRLEDERRLEEQKLKEERARLEEERIRLEKERQLK
FT                 EQEHAIKAKELAMQEKYLRDKFELEERIADDGSSSKSSVLSRKDRTSAWLK
FT                 SQHDLSKRGDNSVTQYSGWPNLVADLAASDRFQRSVDLKVDQCELEPRQTP
FT                 EVAPNYQILGDNVQNEPVGNHFRSARHPATINAGLSQSSCEDRAAVGLNPR
FT                 SHGAGPNSDQILARQIWPKKLPVFSGDPEEWPIFVHSFETANNACGFTDVE
FT                 NIIRLRECLRGPARDAVVTKLMFPQSVNAIMETLRRLYGRPELLVKNLLAK
FT                 VHRIETPKPERLESLINFGLTVQQLCDHLEAANLSGHLSNPTLLGELVEKL
FT                 PASIKLEWARFKRAYSEPPSNTLERLWES"
FT   CDS           1588..6042
FT                 /product="BEL-119_AA-I_1p"
FT                 /translation="MGELVYDASEVTSPIQPKTAVVKADKDKPKEKGHVYS
FT                 HEDAAEVQNRGEERRPCPICGKTDHRVRNCERFQQLGLEGRLKAVDRCNLC
FT                 EVCLFDHGQWRCRSRIRCNVGNCRDRHHPLLHRSGHGPAQEQRQRQFRASE
FT                 CNTHERPQRSVLFRIIPVTLFNGNRKCETFAFLDEGSSLTLIESSLARQLG
FT                 ATGVSEPLELRWTSSVKRNENSSKRVDFEISGKGQPQRYILKNAHTVGELN
FT                 LPSQSLTINELSERFPHLRNLSVSSYTEAVPRILLGLENLSLFAPLDCCIG
FT                 RPGEPIAVKSLLGWSVYGPDGNAPPKSGFVNVHECNCDADRELNDLVRQQF
FT                 ILEDSVIATVPSPESVEEKRAREILASTTKFVEGRYETALLWKADEIDLPD
FT                 SLPMAMKRMKSFEAQLAKDSSLRESVNQQIVDYIRKGYVHKATEEELREIN
FT                 RRQVWYLPLGLVTHPMKQKKRLVWDGKAQVNGISLNSQLLKGPDLLVSLPS
FT                 VICKFREKRVGFGGDIREMFLQLRMRTEDKFFQCFLFRFDSRHPPEVFIAD
FT                 VAMFGATCSPCVAQHVLRENADKWADEFPLAAAAIKDKTYMDDYYDSADTP
FT                 EEASELATQVRTIHARGGFEMRNWVSNSEEVLEKLGENSSMEPRLLQTSPE
FT                 EKWERVLGMLWHPESDTLTFSTELGEQLIPYVSGKQRPTKRIALKIIMSLF
FT                 DPLGLLAPYLIHGRTLIQDLWRSGVQWDEKMRDEEYEKWTRWVELLPSISE
FT                 LNIPRCYFGEAYPPCYQTLQCHVFTDASESGYGCAVYFRSADNTGRLQCSL
FT                 IMAKSKVAPLKHLSIPRLELEAAVLGARMLNTVLSNHSLQPRKVYLWTDSS
FT                 TVLAWIHSDHRRYKQFVAHRIGEILSLTQSECWRWVPSKHNVANCLTKWVR
FT                 DTEPDSNGRWFRGPAFLYLSEDLWPQQRTKVNPTEELRSTYLLTHISLPSQ
FT                 LIDIGRFSKWSVLLRTVACIYRFISNCRLRLAGRPIETILATQNLAKLSKG
FT                 PVTACAVPLKQEEFLQAERFLWRMVQGEHYPDEVRILLKNRDQPIEKWIAI
FT                 ERTSPLYAFSPFADEFGIIRMEGRTADAVHANFDAKYPIILPKDSEITRRL
FT                 LDHYHRQYGHANKETVVNEVRQRFQISRLRAAVDNVFRDCQSCKVNKCKPL
FT                 PPRMAPLPEQRLTPYVRPFSYVGIDYMGPLEVTVGRRKEKRYVAVFTCMVI
FT                 RAVHLEVSYDLSSESCIMSIRRFIRRRGSPVQIFSDNGTNFVGANRELQKQ
FT                 IQRIDLECAGTFTDARTKWSFNTPSAPHMGGVWERMVRSVKEAMATLDDGR
FT                 KLTDEILWTTLIEVEGMINSRPLTYMPQEPENPEALTPNHFILGHSSGAHE
FT                 PLEPPEDLGQTLRSSFMRSQHLANIAWERWSKEYFPAINRRMKWLDEARSL
FT                 KVGDVVYITEGKRRSWIKGIIDEVIPGKDGRVRQAIVRTASGKLKRPVIKL
FT                 AVMELGESTVDPPLDSRGGG"
XX
SQ   Sequence 6042 BP; 1659 A; 1392 C; 1627 G; 1364 T; 0 other;
     atctcaaaga tttaagacca ggatgcgagc tgcccatgac tgcggggcct gcgatgcgcc        60
     gaactccgct gacgtaggta tggtggcatg cgacggatgt ggtgtttggt accactatgc       120
     ttgtgccaaa gtgtcgccgg gagtccaaca ccgatcgtgg agatgcagta agtgcccacc       180
     tgaaccgatt ccggggacca ccggagcaaa gaagaaaaca aataaaaaac agccggcgag       240
     cttgactgtc ctcgttgcac cgagtgagat acacaagtcg agcgatgcca gccagagaaa       300
     gacctcggag aagtcgaaga actccgacaa atccaagacc ttggttgttc ccattcttgc       360
     ggagggtgac aatactactc cgaagaaaca ccctgagatt cctgcggtgg acaaatcggc       420
     ccatggggag atgcgatctt ccaaatccag cacttcgacc gccagagctc gagcgcaatt       480
     agcattgcag cgattagaag acgagcgacg attggaggag cagaagttga aggaagagcg       540
     agcgcgattg gaagaagaac gaattcgtct agagaaggag aggcagttaa aggagcaaga       600
     gcatgcgatc aaggccaagg agttagcgat gcaggagaaa tacctgcgag acaaatttga       660
     gctggaggaa cgaatagcgg acgacggaag cagcagtaag tccagcgtac taagtcgaaa       720
     ggatagaact agtgcttggc tgaaaagtca gcatgacctg agcaagagag gagacaacag       780
     cgtcacacag tattcggggt ggcctaattt agtagcggat ttggcagcat cggatcgttt       840
     tcaacgtagc gtcgatttga aagtcgatca atgcgagtta gagccgcgcc aaacccccga       900
     agtggctcct aactatcaaa tcctcggcga taatgtccag aatgaaccag tcggaaacca       960
     ctttcgaagt gcgcgacatc cggctaccat taacgctggt ttgtcgcaat cttcatgtga      1020
     ggatcgtgcg gcagtcggtt tgaatccacg ttcgcacggc gcggggccaa atagcgacca      1080
     gatattggcc aggcaaatct ggccgaaaaa gcttcccgtc ttttcgggcg accctgagga      1140
     gtggccgata ttcgtccata gcttcgagac agcgaataat gcgtgcggtt ttacggacgt      1200
     ggaaaatatt atccgcttga gggagtgctt gcgaggtcca gcgcgagatg ccgtcgttac      1260
     gaaattgatg tttccccaga gcgtgaatgc gatcatggaa acgttgcggc gattgtatgg      1320
     tagaccagaa cttttagtga agaatctact ggctaaagtc caccgaatag agactcccaa      1380
     accggaacgt ttggaatcgt taataaactt cggtttaacg gttcaacagt tgtgtgatca      1440
     cctagaagcc gccaatttga gcggccatct gtcaaaccct acgttacttg gcgagttagt      1500
     ggagaaacta ccagcttcaa taaaactcga gtgggcgaga ttcaagcgag cgtattccga      1560
     accaccctca aacactttgg agcgtttatg ggagagctag tgtatgatgc cagcgaagtt      1620
     acttctccaa tccagccgaa gaccgctgtt gtgaaagccg ataaggacaa gccgaaagag      1680
     aagggacacg tctattccca cgaagatgca gctgaagtac agaaccgagg agaagaacgg      1740
     cgaccttgtc cgatatgcgg taaaaccgac catcgtgtac gaaactgtga acgatttcag      1800
     caattgggtc tagaaggtcg tcttaaagcc gtcgatcgat gtaacttgtg cgaagtctgt      1860
     ttattcgacc atggtcaatg gagatgccgt tcgaggatcc gatgcaacgt cggaaactgt      1920
     cgcgatcgcc atcacccact gcttcaccgt tcagggcacg gtccagcgca agaacagcgt      1980
     cagcgtcaat ttcgtgcctc ggaatgcaac actcatgagc ggccacagag atcggttctg      2040
     ttcaggatca tcccggtaac gttgtttaat gggaaccgaa aatgcgaaac tttcgccttt      2100
     ctagacgaag gttcatcttt gacgctcatc gaatcaagtc tagcacggca gcttggagca      2160
     actggcgttt cagaaccgtt ggagttgaga tggacgtcga gcgtgaagag aaacgagaac      2220
     agttcaaaac gtgttgattt cgaaatttct ggaaaaggac agccccagcg atacatattg      2280
     aaaaacgcgc acactgttgg agaactaaat ctcccgagtc agagcttgac catcaacgaa      2340
     ctatccgaga gatttccgca ccttcgaaac ctctctgttt cgtcatacac cgaggccgtg      2400
     cccaggattc ttctaggatt agaaaatctt agtctgttcg cgccgttgga ttgttgcatt      2460
     ggcagaccag gagaaccgat cgcagtaaaa tcgctcctag ggtggtccgt gtatggtccg      2520
     gatgggaatg caccacctaa aagcggattt gtaaatgtgc acgagtgtaa ctgtgatgca      2580
     gacagagaac tgaacgatct agttcggcag cagttcatcc tggaggacag tgtgatcgca      2640
     acggtgccct cgcctgagtc ggtcgaagag aaacgcgccc gcgaaatttt agcgagcacc      2700
     actaagtttg tcgaagggag atatgaaacc gctctgcttt ggaaagctga cgaaattgat      2760
     ctacctgata gcctccctat ggcgatgaag cggatgaaaa gttttgaagc tcaattagcg      2820
     aaggattcaa gtcttcgaga aagcgtgaac cagcaaatcg tcgactacat acggaaaggc      2880
     tacgttcaca aggcaacaga agaagagctg agagagatca acagaaggca agtctggtac      2940
     ctcccgttgg gcctggttac gcatccgatg aagcagaaaa agaggctcgt gtgggacgga      3000
     aaggcacaag taaatggaat ctccttaaat tctcaacttc taaaaggccc tgacttgctt      3060
     gtgtcgcttc cgtcagtgat ctgcaaattt cgtgagaagc gcgtaggatt cggaggggat      3120
     atccgcgaaa tgtttttgca gcttcggatg agaactgagg acaaattctt ccaatgcttc      3180
     ctgtttcgct ttgactcacg gcaccctccg gaagtcttta ttgcagacgt agcaatgttc      3240
     ggcgccacat gctcgccatg cgtcgcgcag catgtactac gagaaaacgc cgataagtgg      3300
     gccgacgaat ttccactggc tgcggcggcg ataaaagata aaacttatat ggatgactat      3360
     tacgatagcg ccgacactcc agaagaagcg tcagagttgg caacgcaagt tagaaccatc      3420
     cacgcccgtg gagggtttga aatgaggaat tgggtgagca acagtgagga agtgttggaa      3480
     aaacttgggg aaaactcgtc catggaacct cgtttactgc agacaagccc ggaggaaaaa      3540
     tgggaacgag tcttgggaat gttgtggcat ccggaatcag acacactgac gttttcaaca      3600
     gaacttggag aacagctgat cccctacgtg tctggaaaac agcgcccgac aaagcgaatc      3660
     gctctcaaaa tcatcatgag cctgtttgac cctttagggc ttctagcacc gtatcttatc      3720
     cacgggcgca ctttaatcca ggatctgtgg agaagcggtg tgcaatggga tgaaaaaatg      3780
     agagatgaag aatacgaaaa atggacgcgt tgggtggagt tgctgcctag cataagcgag      3840
     ctcaacattc cacgatgcta tttcggcgaa gcataccctc cttgctatca aacgttacaa      3900
     tgccacgttt tcaccgatgc tagcgagagt gggtacgggt gtgcagtgta tttccgcagt      3960
     gctgataata ctggacgctt gcaatgctcg ctgattatgg caaaaagtaa ggtcgctcct      4020
     ctaaagcatc tatcgatacc tcggttggaa ttggaagcgg ccgtacttgg agcaagaatg      4080
     ttaaacaccg ttttgtcgaa tcactctctt caacctcgca aggtgtacct atggacagat      4140
     tcttcgactg ttctcgcttg gatccattca gaccacaggc gttacaaaca atttgtagcc      4200
     catcgtatcg gggaaattct ctctctgacg caatcggaat gctggcgatg ggtaccgtct      4260
     aaacacaacg tagctaactg tttaacgaag tgggtacgtg atacggagcc ggattcgaac      4320
     gggaggtggt tccgtggtcc agcgtttttg tacctttctg aggacctgtg gccacagcaa      4380
     cgaaccaagg tgaatcctac tgaggaattg cgatcgactt acctgctcac tcacatttcg      4440
     ctgcccagtc aactgataga catcggcaga ttttcgaagt ggagtgtact gttgcgcact      4500
     gtggcgtgca tttatcgctt tatcagtaac tgccgattac gcctagctgg acgaccaata      4560
     gaaacgattc ttgcaacgca aaacttagcc aaattatcga aggggccagt gacagcgtgc      4620
     gctgtgccat tgaagcagga agagtttcta caagctgaaa ggtttctctg gagaatggtg      4680
     cagggagaac actaccctga tgaagttcga atactgctga agaatcggga tcagcctatt      4740
     gagaagtgga tagctatcga gaggactagc ccactgtacg cattttcacc ctttgccgac      4800
     gaatttggaa tcattcggat ggaaggaagg accgccgatg ctgtacatgc taatttcgac      4860
     gcaaaatatc ctatcatcct tccaaaagat agcgaaatca cacgacgtct tctagatcac      4920
     taccatcgtc aatatggtca tgcaaataaa gaaaccgtcg taaacgaagt tcgtcaacgg      4980
     tttcagattt cacgtcttcg ggcggctgtt gacaatgttt ttcgtgactg tcaatcttgt      5040
     aaagtgaaca aatgcaagcc tcttcctcct cgaatggctc cgctacctga gcaacgtctg      5100
     accccgtatg ttcgcccttt cagctacgtc ggcatagatt acatgggccc actggaggta      5160
     actgttggtc ggcgcaaaga gaaaagatac gtcgcagtat ttacgtgcat ggttattcga      5220
     gctgtgcact tagaagtctc gtacgatttg tctagtgaat cgtgcatcat gtcgatccgg      5280
     aggttcatac gcaggcgcgg atctccagtt caaatcttct ccgacaacgg gactaatttt      5340
     gttggtgcca atcgagagct ccagaagcag atacagcgaa tcgatttgga gtgtgccggc      5400
     acatttaccg acgctcggac gaaatggtct ttcaacaccc cctccgcacc acacatgggc      5460
     ggagtgtggg agcgcatggt gcgtagcgtt aaagaggcca tggctacgtt ggacgatggg      5520
     aggaaactta ccgacgaaat tctgtggact acgttgatag aagtggaggg aatgatcaat      5580
     tctcgaccac ttacctacat gccgcaagaa ccagaaaatc cagaagcgtt aacgcccaat      5640
     cattttattc tggggcattc atctggtgct catgaaccgt tggaaccacc ggaagatctg      5700
     ggccagactc ttcgaagcag ttttatgcgc tctcaacatt tagcgaacat cgcttgggag      5760
     cgatggtcta aggaatactt tccagccatc aaccgaagaa tgaagtggct ggatgaagcg      5820
     aggtcgttga aggtcggaga cgtagtttac attacggaag gcaaaaggag gtcgtggatt      5880
     aagggcatca tagatgaagt cattcccggt aaggacggta gagtgcggca agcgatcgta      5940
     cgtacggcat ccggtaagtt gaagcggccg gtaattaagt tggcagtaat ggagctgggt      6000
     gaatctacgg tagatcctcc cctcgattca cggggcgggg ga                         6042
//
ID   BEL-119_AA-LTR repbase;    DNA;    INV; 629 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-119_AA_;
KW   BEL-119_AA-I; BEL-119_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-629
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions 1243887 1243259.
XX
SQ   Sequence 629 BP; 196 A; 125 C; 120 G; 188 T; 0 other;
     tgttctggca acacggatgg cactcgtcag cgcggggtgc agaatcctac tcgtcgcaca        60
     gaagactgcg aagccaacaa tgaattgcca tagtacaata gctgttgtta aaagccacga       120
     tgtgctagcg tgaaaaacct taagttagat acaaattact atttttctaa tcagttaatc       180
     taattaagtg aatttgatcc atttaaattt gtttagtaca aagagtggag cttatgtgaa       240
     ttggattctc agcttttctg tgtaacaggt aaagataagg ctcacatatg ctaacaggct       300
     atatctcatt tctaattatg ccattctaat atgtagagtt cattcagcgt ctcgttaaga       360
     gtaccaccgt gcgcataaaa ttcatgctac taggtatgtt aaaaccctga ttcgttgaat       420
     tatagttata attagttacc ggtactctca ggcggcggca acaagcgctt tcagccccaa       480
     cttcccgaag agaaacgcat tggtataggc aagactaaat gtacatgatg ttacatgact       540
     ttttcaacag caattataat aaaattatat ttttagcttt gagctgcaca cataaactgc       600
     tgctagaaga cccttcgcct atccgaaca                                         629
//
ID   BEL-11B_DAzt-I repbase;    DNA;    INV; 7728 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAzt-I;
KW   BEL-11B_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7728
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 788-788 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. The consensus is ~93% identical to
CC   that of BEL-11_DAzt-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           1275..6602
FT                 /product="BEL-11B_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPTDPAEDKPELLSVPVSLHRRSNSDPSQAVDPQAPI
FT                 TRSVGQTLKLRSMSYLTTFISVTDRLTQFESKFASNSEVSMHTLKVRQEQI
FT                 RSLWDKVEQEFERCSKALSESAGHSNDSDTVTLHAKYDYCYAAYERCASSL
FT                 SEQIESLTVPRALPNVAQQPRGCRVPPVDTEVFAGDYLKWPTFRDIFTAVY
FT                 INHPGLTQVEKLFHLNAKTSGDAKAIVSKSPLTNDGFASAWQALVSRFENK
FT                 RLLVNSQLRILFNVQPISHESGTALKDLQSTIQGCLSALALSNISTENWDC
FT                 LLVFMCSSKLPKITLSLWEQSLQSKVDIPTWKELNTFLLERYRTLEAIEDV
FT                 RPHVVPPLAVKATRREPPSNRLNSFEAKVTAKIQTCRLCAKENHPFRTCPK
FT                 FLRMSVHERSDTIKQHKLCLNCFARGHNLRDCTSTHNCHTCKGRHHTLLHR
FT                 PTNTQAGDPGIVLDTSVNVQSTPLPQPTVQNYFSESTHSVLLGTAIIHVCS
FT                 LGNKYTARALVDSGSEATFISERLFKLIRPQYQSVDAQVSGLNGTIAAQPQ
FT                 RLCHFHIGSPTQPRVQIETSGFVLPKLAGNLPSYTIPQSALEDLPDLQLAD
FT                 PEFYKSSQIDVLLGADILPSILLKGSCTNICGTLLGQETIFGWTITGPVSN
FT                 TGAKAISSFTTRISVNEEVRLEKLLTKFWEVEDIPVKLVKESDAACEKLFR
FT                 QTITRNERGRYVVTLPFKNPESIDLGHSRSIALAQLLRNENRLNKDSSLKE
FT                 QYDKVLQEYSDLGHMRPVPSTNGPNNFYLPHHAVYKPESTTTKLRVVFNAS
FT                 SPSSNGKSLNDVLHPGPVLQSDLTTQILKWRVFRYAFNADINKMYRQILVA
FT                 PQHAPYQRILFRDPTGDVCDYELNTVTFGVNCAPFLAIRVLRQLAQDVRSE
FT                 FPLASDILANYMYVDDVLAGAHTQAQAISAIKELRQALNSAGFPLRKWTAN
FT                 QKGVLLDIPVDHRLRADFLELEESSIAKTLGIRWQASADEFFFVSPELITQ
FT                 ASCTKRNVLSQIAKLFDPAGWLAPFVIQAKMFMQEIWLRDIGWDDVLPSDL
FT                 SQTWENFLQSFPAVQAIHIPRWLHVCPAAKVQIHGFCDASQRAYGAAIYIR
FT                 VEQSQGTFCNLLTAKTRVAPVKTVSLPRLELCGALLLAELSSAILPQMPFD
FT                 TSQVSFWTDSTIVLAWLSRPACDWTTFVGNRVAKIARCSSNVRWSHVRSED
FT                 NPADLASRGLGPKDLSTNEMWWHGPAWLRCPPSEWPCPLAISPETDLERRT
FT                 IKVHHASNSVTDILSRFSDFGRALRVLAYVRRFAQRCRREAIHPDKSPSRD
FT                 ELAAALQAVTIVTQKIHYANEHQCLATKRPLLASSSLRTLNPFVDTNGVIR
FT                 ACGRVQASASMSYNERHPIILPPACPLVRLLVRFTHHIALHSGNQVVVRLL
FT                 RATYWIPRLRHVVRAVIHSCKVCVIQRKRLQTQLMGDLPSTRVTFSRPFTY
FT                 TGVDFAGPFDVKSFTGRACRLTKGYVCVFVCFTTKAIHLEATSDLSADTFL
FT                 AAFARFVARRGCPHEVHSDNGRNFLGASRALAQDLLETVKARTSEVYSQQG
FT                 LAWRFIPPGAPHMGGLWEAGVKSFKALFQRSMCTYKYTLEEFSTFLSKIEA
FT                 CLNSRPISPMSEDPTDPLALSPGHFLVGGPLLSVAEPEIRESASSILNRWQ
FT                 HLKALNQQFCSRWKTEYLRELHKRNKWQHPTRDLKNGDLVVIKEDNLPPQE
FT                 WRLGRVQKTYPGADNKVRVIDLLTARGLIKRPIAKVVLLPMDSAIHSTYAS
FT                 VDTGP"
FT   CDS           6714..7667
FT                 /product="BEL-11B_DAzt-I_2p"
FT                 /translation="MAPRQYRRSRSQEQAEEGRRTRGTMSYRCRVCRGVHP
FT                 LRKCGRFLRLSAEKRLRAALINKYCANCLAHEHSGRDCRSGDRCKHCRGNH
FT                 HTLLHTPSSDRRRPAPSAPSARAPAPSAPSARAPAPSAPSARAPSPTTSSA
FT                 RAPPPTTPSACSTRPPTLATLLQHRNPPVLPTATVKIDNGVTVYETRALID
FT                 PCRPVSVINASLARAFKLQTVVIGEEEACTAVIRSPISNDFKLEVVIQVDP
FT                 KLHLRTPAAAIDGGLRNRFRHLTLADDRFDHPAIVALILGADVYGDVVREG
FT                 MLASTEGLPVAQHTVFGWTLSGAYRT"
XX
SQ   Sequence 7728 BP; 1926 A; 2266 C; 1758 G; 1778 T; 0 other;
     tttggtcctt cgagccggat cctcgctctg attttctttg agaagatcac ggatacgcat        60
     ccccccaatc cgctcgcccc agcaatcatc gttggaattc cgcaatccaa aggagaaaaa       120
     agcccagata agtaatatac tcctgatact actgcacatt gcaactcctt ggcaactcct       180
     gtgcaaatat ctttatttat ccctggtgct ttctcctccg aacactccgt tcaaatatat       240
     gattttttcc tatcgtccga tccatatcca gccgccatat ctgcactttt gcatacacac       300
     atatgtatgt acgcaaacct gtccgcacat aggcttatac ataaggcgcc atattgtgga       360
     aataaatatc cgaatatttt ccggtgcata tagtttccca gtcctcccaa taaaaagtgc       420
     aagttattgt ttatattcta tatattgtta agcatttatt ggtgaattcc agtacttgta       480
     tatatgtaca tgcacatgac catgcatgcc ggcacttgag cgtacataca cttgtacaga       540
     catacataca ttgttgctga catatgcacg gcatatttta caaaagactt tcaacatata       600
     caagactaat taaacagagt ttccgccacc aaatataaaa gctaacataa catataccta       660
     atccaaaatc tctgcacatg cccacagtca ctagtgtatt caaaaataaa gtgccacacg       720
     aagttacata tttacataca ctttatttac acattcaaga acacggcacc cagagcaatc       780
     gtaccacaac tccaatcgag tacgcattgc cgacatctaa taataacaaa tcacaacata       840
     gacacgaatc tctattttaa tttattttat taaacacaaa aataaaacac aaaatctcca       900
     attatttgtt ttatatacgc ccacacatac atacatatta cacatcgata tcgatatcac       960
     cgcactagca gaaaaatact aaaagaacat tttaaacggt cccaccgttt agcatcacat      1020
     ctgcatccgc atccaatatc acatcattca taaactagta ttttttctga gacgacaatt      1080
     aaacgatttc ttattattac aattttgaaa gcaatattgg ttgtttggtc cgctgcgctt      1140
     atattcgata attattaata tttatttatt atctggttgg gccattccac tgttccgaac      1200
     tgtcctgtta ccattggtgt accggtccta agaatatttt ttgcaaatct tttgtggctg      1260
     cctaagatcc tagcatgcca acggaccctg ccgaggataa accagagctc ctttcggtcc      1320
     cagtcagtct ccatagaaga tcaaattccg atcccagtca agccgttgat ccacaagcgc      1380
     ccattactag gtcagtcggt cagaccctca aactaagaag tatgtcttat ctaactactt      1440
     tcatttcggt gaccgatcgt ctcactcagt ttgagtccaa gttcgcctcc aattccgaag      1500
     tgtcaatgca cacgctcaag gtccgacaag agcagattcg gagcttgtgg gacaaggtcg      1560
     aacaagaatt cgagcgctgt tccaaagcgc tctctgaatc tgcgggccac agcaatgatt      1620
     cagatacggt cacccttcat gctaaatacg attactgcta cgcggcatac gaacggtgtg      1680
     catcctcgct aagcgagcag atcgagagcc ttacggttcc aagagcactt ccaaatgttg      1740
     cccagcagcc aagaggctgc agggtaccac ctgttgacac cgaagtcttt gccggagact      1800
     atttgaaatg gcccacgttc cgggacatct tcacagcggt gtacatcaac catccaggtc      1860
     tgacccaagt agagaagctt tttcatttga acgcaaagac gagtggcgat gccaaggcta      1920
     ttgtgtccaa gtccccgctt accaacgatg gttttgcgtc agcatggcaa gcactcgtca      1980
     gcaggttcga aaataaaaga ctgctagtaa acagccaact ccgaatcctc tttaatgtgc      2040
     aacccatctc tcacgagtcg ggaaccgcat taaaggattt acagagcacc atccaagggt      2100
     gcctatcggc tctggcgcta tccaatatct ccactgagaa ttgggattgt ctcctagtat      2160
     tcatgtgttc ctccaagctt ccaaagatca cactatccct gtgggagcaa tccctccaaa      2220
     gtaaggtgga tattccgact tggaaggaac taaatacatt cctactggag cggtatcgaa      2280
     ctctagaggc aatcgaagat gtaaggcccc atgtagttcc accgctggcg gttaaggcaa      2340
     ccagacggga acctccatcc aaccgactga actcctttga ggccaaggtc acggccaaga      2400
     ttcagacttg ccgactttgc gccaaggaga accatccatt ccgaacatgt ccgaagttct      2460
     tacgaatgtc tgtccatgaa cgatccgaca caattaagca gcacaaattg tgtttaaatt      2520
     gctttgccag aggtcacaac ctgagggact gcactagcac gcataattgc catacctgca      2580
     agggtcgtca ccacactctt cttcatcgtc cgacgaatac ccaagcaggt gatcctggaa      2640
     tagttttgga tacctccgtc aacgtacagt ccactcctct tccacaacca acggtccaaa      2700
     actatttctc ggaaagcacc catagcgtcc tcctcggcac ggcaataata catgtatgtt      2760
     ctttagggaa caaatataca gcgcgtgcat tggttgactc tgggtcggaa gcaactttca      2820
     tttccgaaag gttgttcaaa ttgatacgac cccagtatca gtcggttgac gctcaagtct      2880
     cagggctcaa tggaaccatt gcagcccaac ctcagcgact atgccatttc catattggct      2940
     ctcctactca gccgagggtc caaatagaga cttcggggtt cgttcttcca aagctggcag      3000
     gaaatctgcc ctcctataca attccacaaa gtgctttgga agatcttccc gatctgcaac      3060
     tggcagatcc ggaattttat aagagttccc agatagacgt cctactggga gccgacatcc      3120
     ttccatccat cctgctaaag gggtcctgta ccaacatctg tggtaccctt ttaggacagg      3180
     aaacgatttt tggctggacc atcacgggtc ccgtctccaa cactggggcc aaggccatat      3240
     catctttcac cacccgaatc tcggtcaacg aagaagtgag attggaaaaa cttctcacaa      3300
     aattttggga ggtggaggat atcccagtta aactggttaa agagtccgac gcagcttgtg      3360
     agaagttgtt tcggcagacg atcacgagga acgaaagggg cagatatgtg gtcacccttc      3420
     cattcaagaa tcctgaatcc attgaccttg gtcattcaag atctatcgca ctagctcagc      3480
     tcctacgtaa tgagaatcgc ttaaataagg actcatccct gaaagagcag tacgataagg      3540
     tccttcagga gtactcggac cttggtcaca tgagaccagt tccttctaca aacggtccaa      3600
     ataattttta cctccctcat catgcggtct acaaacctga aagtaccacc acaaagcttc      3660
     gcgttgtatt taacgcctcc agtccgtcct caaacggcaa aagcctcaac gacgtcctac      3720
     atccgggacc cgttctccaa tcggatctga ctacgcagat cttaaagtgg cgtgttttcc      3780
     gatacgcatt caatgccgac atcaataaga tgtatcgcca gattctggtg gcgccccaac      3840
     atgccccgta tcagcgcatc ctcttccgcg atcctacagg agatgtgtgc gactatgagc      3900
     tcaacacggt cactttcgga gtgaactgcg cgccgttcct cgccattcgg gtcctacgac      3960
     agctcgcaca agatgtacgc tccgaatttc cactggccag tgacattctg gccaattata      4020
     tgtacgtaga tgacgtactt gctggtgcgc acactcaggc tcaggcaatc tccgccatca      4080
     aagagctacg acaagccctc aactctgcag ggtttcccct ccgaaagtgg accgccaacc      4140
     agaagggcgt tctgctcgat attccagtcg accaccgact acgagctgac ttcctagagc      4200
     tcgaagagag cagcattgcg aagaccttgg ggatccgatg gcaagccagt gccgacgagt      4260
     tctttttcgt ctcccccgaa ctaatcactc aggcgtcctg cacgaagcgc aatgttctgt      4320
     cccaaattgc gaagctgttc gatccagcag gttggcttgc cccctttgtc attcaagcga      4380
     agatgttcat gcaggaaatt tggttgagag atataggttg ggatgacgtc ctcccgagcg      4440
     acctatctca aacatgggag aattttctgc agagttttcc ggccgttcag gcgatccaca      4500
     tacccaggtg gttacacgtc tgcccggcag ccaaggtgca gattcatgga ttctgcgatg      4560
     cgtcccagcg cgcctatggg gcggcgatct acatccgagt agagcagtcc cagggtacct      4620
     tctgcaacct tttgaccgct aaaacccgcg tagcacccgt gaagacggtc tccctacccc      4680
     gactcgagct gtgcggggcg ctccttctgg cagaactctc ctctgccatc cttccacaga      4740
     tgccgttcga caccagccaa gtatcgtttt ggaccgactc taccattgtg ttggcctggc      4800
     tgagcaggcc ggcgtgcgac tggaccacgt ttgtgggaaa tcgagtcgcc aaaatagcgc      4860
     ggtgcagctc caacgtgcga tggagccatg tccgatccga ggacaatccg gcagacctgg      4920
     caagccgagg tctaggaccc aaagacctca gcacaaacga aatgtggtgg cacggcccgg      4980
     cctggttgcg atgtcctcca tctgaatggc cttgtcctct ggccatatcc cctgagacgg      5040
     acctggagag acgaaccatc aaggtgcacc acgccagcaa cagcgtcact gacatcctca      5100
     gccggttctc cgacttcggg cgcgctctac gcgtgcttgc ctacgtaagg cgtttcgctc      5160
     aacgatgcag aagggaagcg atccatcccg ataagagtcc aagcagggat gagctagctg      5220
     ccgcactgca agccgtcacc atcgtgacgc aaaaaatcca ctatgccaac gagcatcagt      5280
     gcctcgctac gaagcggcct ctcctggcct cgagttccct acggactctc aatccgttcg      5340
     ttgacacgaa cggcgtcatc cgagcatgtg gccgagtcca agcctcggct tcgatgtcgt      5400
     acaacgagcg gcatccgatc atattgccac ccgcatgccc tctggttcgc ttgctggtcc      5460
     ggttcactca ccacatagcc ctccatagtg ggaaccaggt ggtcgtccgc cttctccgcg      5520
     ctacgtactg gatccctcga ctacgtcacg tagtgagagc agtgatccac tcgtgcaagg      5580
     tttgcgtcat ccaacgcaaa cgcctccaga cccaactaat gggcgacctt ccgtcgacac      5640
     gtgtaacctt ttcccgaccg ttcacgtaca ccggagtcga tttcgccggg cccttcgacg      5700
     tcaagagttt caccggacgc gcttgccgat taaccaaggg ttatgtgtgc gtgttcgtgt      5760
     gcttcaccac caaggcgatc cacttggaag ccacctccga cctgtccgcc gacactttcc      5820
     tcgctgcgtt cgctcgtttt gtcgcgaggc gagggtgccc ccatgaagtc cactccgaca      5880
     atggcaggaa cttcttaggc gcttccagag ctttggccca ggacctactg gagacagtca      5940
     aggctcggac atctgaggtg tacagccagc agggcctggc gtggcgattc atccctccgg      6000
     gagcgccaca tatgggtggc ctgtgggagg caggcgtcaa gagcttcaag gctctgttcc      6060
     aaaggtcgat gtgtacctac aaatacacat tggaagaatt ctcgaccttc ctctccaaga      6120
     ttgaagcctg cctcaactcg cgccccatct cccctatgtc tgaggatccg acggacccac      6180
     tggctctcag tccgggtcac ttcctggtcg gcggtccgtt actatccgtg gcggagccag      6240
     agatcaggga gagtgcctcc tctatcctca accgctggca acatctcaag gctctgaacc      6300
     agcagttttg ctcacgctgg aagacagagt accttcgaga gctgcataag cggaacaagt      6360
     ggcagcatcc aacgagagac ctcaaaaatg gagacctcgt cgttatcaaa gaggataacc      6420
     taccaccgca agaatggcgg ctgggtcggg tgcagaaaac ctatcccggc gccgataaca      6480
     aggtccgcgt gatagacctt ctcacagccc gcggccttat caaaaggcca atcgcgaagg      6540
     tggtcttact gcccatggac tccgcgatcc actccaccta cgccagtgtg gacactggcc      6600
     cttaagaagc tgtcttccgt cccttaggct taagtcatta gttccatacg gcttgtagtt      6660
     acagttacaa ctccagtaat tcatttcacc atttccgcag cccaacaacc actatggcac      6720
     cccgtcagta ccgacgctct cgcagtcagg agcaagccga agaaggcaga cgtacccgag      6780
     gtaccatgtc ctaccgctgc cgagtctgcc gaggcgtcca tcctctgcgg aagtgcgggc      6840
     ggttcctgcg gctaagcgct gaaaagcgtc tgcgggcggc gctcatcaac aagtactgcg      6900
     ccaactgcct ggcccacgaa cactcaggac gcgattgtcg cagcggggac cgctgcaagc      6960
     actgccgtgg caaccaccac accctgctcc atacgccgag ctcggaccgc cgtcgccccg      7020
     ctccatccgc gccgtccgca cgagcacccg ctccatccgc gccgtccgca cgagcacccg      7080
     ctccatccgc gccgtccgca cgagcaccct ctccgacaac gtcgtccgca cgagctccac      7140
     ctccgacaac gccgtccgcc tgctccaccc gacctccaac tctggccaca ctgctgcagc      7200
     accgcaaccc gccggtccta ccgacggcca ccgtcaaaat cgacaatggc gtaacggtct      7260
     acgagaccag ggcgctgatc gacccctgcc ggcctgtgtc ggtaatcaac gcgtcgctgg      7320
     ccagggcgtt caagctccag acggtggtaa tcggggagga agaagcctgc accgcagtga      7380
     tccggtcgcc tatctccaac gattttaagt tggaagttgt gatccaagtg gaccccaagc      7440
     tgcacctgcg aactcctgcg gcagccatcg atggaggact ccgaaaccga ttcaggcacc      7500
     tcaccctggc ggacgacagg ttcgaccatc ctgccatcgt tgcgctcatc ctgggagctg      7560
     acgtctacgg ggatgtcgtc cgagaaggga tgctagcaag cacggaagga ctccctgtgg      7620
     cgcagcacac cgtgttcggg tggacactgt caggcgccta ccggacctga aaatggaccc      7680
     ccttatatcg tgccactctg gttgcatgat cctgcaaggg gggcggga                   7728
//
ID   BEL-11B_DAzt-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAzt-LTR;
KW   BEL-11B_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-195
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 785-785 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs. The consensus is ~93%
CC   identical to that of BEL-11_DAzt-LTR.
XX
SQ   Sequence 195 BP; 68 A; 50 C; 35 G; 42 T; 0 other;
     tgtttaggcc tagaagtagg caacgatatg gagcaccgat acacaaccca ccactccttg        60
     gcaacatctc gctagaaata atataggtgc taagaacatt gctgtaaaca cccagggtaa       120
     tagaaaatat agtgcgaacg aagcaatacg tcttttttat tctgcaaccc aggaaaacca       180
     accccctcca catca                                                        195
//
ID   BEL-11N1_AnFu-I repbase;    DNA;    INV; 2733 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-11N1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-2733
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 657-657 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           262..2730
FT                 /product="BEL-11N1_AnFu-I_1p"
FT                 /note="PHD zinc finger and DUF1759."
FT                 /translation="MSVEQVLDMQNTSEELSCRVCAQPGGDKCILCDACRQ
FT                 AYHFECVGVDDSVVNREWFCQVCIAKTTEARSSSPIEPRQQDQAMKEISRL
FT                 FEEMKACMEQRSDTPRQSRSVRVCYSCNGPETSEMIACQKCDRQTHYICLP
FT                 VGFSRAERNTWLCAFCKLKKMESTNTIDVVLARLEAMEQKMEGQAMASVPR
FT                 ASYGIPPASSTAWGQSSTEGAHELTRIQRSARQAVTGKLPPFSGNPEEWAM
FT                 FIASYEETTRLCGYTDGENILRLQLALKGKALKAVQCRLRHAENLPEVMET
FT                 LKAMYGRPEIVINTLLEQVQRMPLPKTDNLETLVDYGIAVEEICATVRSSC
FT                 SESRFDGPLLQELVGRLPGIVKLMWGMHIREKPAPTLADFGKWMRDTKDAA
FT                 LLVTPPSTKRDDKKLTKQVNVHTAVRHTYPSTATCACDDRCRQLDCCEKFL
FT                 HMTAAERWKHVRTSHFCSGCLRRHRNECRDNRTCGKNGCTQKHHPLLHDNT
FT                 ANPEAENSKYATNLSHFTTSQPDVLLRYVPVTLHGRGKSIDTVALLDEGST
FT                 VTLMEHRMMKELGLEGSTKPLCLRGTGGQVREETDSMQTNLYISGRRASDH
FT                 RYEISSVHTVRSLGLPPQSVSAEKLGEKYSHLSALPIPSFDSAVPRILIGI
FT                 DNYHLTRPLRTVEGPSNEPVATKTRLGWVVSGCCRLQDHGTSFGRANQELR
FT                 QSLKEVNVNKIAEQVNLTGTKWTSNPLAAPHLGEAWESRLIEVEPIINRDP
FT                 LTDVPVDREEDDRLMPNHCLVESSSGAKPAAEYDADHVQLASGKVLERPVV
FT                 KLAVIDFGQIRSDSTDENTAG"
XX
SQ   Sequence 2733 BP; 737 A; 673 C; 747 G; 576 T; 0 other;
     ttttaaaaaa atcactttct taataagctc ggtaaaacct cgctattacg cgataacgtg        60
     tgcgcttgcc ctgagaaatt cgggtttacg tgtatgtgat tgtgtgaaac aatcttgagg       120
     caatcggatt gcgcgagttt aatcgagact tttacaaact ataaaatcct gagtaattcg       180
     gattcgcact agtgtcaacc gtcgcgtcgc gtcttgagaa attcggattt gcgtcgaagg       240
     agttctgagg taaatcggac tatgtcggtg gaacaagtgt tagatatgca gaatacaagt       300
     gaggaactgt cgtgtcgtgt gtgcgcgcag ccgggaggtg acaaatgcat tttgtgtgat       360
     gcgtgcaggc aagcgtacca ctttgagtgc gttggcgtag acgattcagt ggttaaccgc       420
     gaatggtttt gtcaagtgtg tatcgcaaag accacggaag ccagatcatc atctccgatc       480
     gaaccacgac agcaggacca agccatgaaa gagattagcc gtctctttga ggagatgaag       540
     gcgtgcatgg agcagagaag tgatacgccg agacagtctc gttccgttcg ggtttgctac       600
     tcgtgcaacg gacccgagac cagtgaaatg atcgcctgcc aaaaatgcga tcgtcaaacc       660
     cattatattt gtctgccagt gggattttct agagcagagc gcaacacgtg gctatgcgct       720
     ttctgcaaac taaaaaagat ggaatcgacg aacaccatcg acgtggttct ggccaggctg       780
     gaagcaatgg agcagaaaat ggagggacaa gcgatggcgt cggttccacg tgcctcctat       840
     ggaataccgc ctgcttcctc tacagcatgg ggacaatcat cgacggaagg agcccatgag       900
     ctgacccgga tccaacgctc cgctaggcaa gcggttaccg gtaagcttcc gccgttttcc       960
     gggaatccag aagagtgggc gatgtttatc gccagctacg aggaaactac ccgtctttgt      1020
     ggctacaccg acggtgaaaa tatcctgcgc cttcagctgg cactgaaggg aaaggcgcta      1080
     aaggcagtgc agtgtcgttt acggcatgct gaaaacttgc cggaagtaat ggaaacgctg      1140
     aaggcgatgt acggacggcc ggaaattgta ataaacacgc tgttggagca ggtccaacgc      1200
     atgccgctac cgaaaacgga caacctggag acgctagtgg actatggcat agcagtggaa      1260
     gagatctgtg ccaccgtccg ctcgagctgc tcggaaagtc gttttgacgg accgctcctg      1320
     caagagcttg ttggaagact gcctggaatt gtgaagctga tgtggggcat gcatatccgg      1380
     gaaaaaccgg ccccaacgct agcggacttc ggcaagtgga tgcgtgacac aaaggatgct      1440
     gcgctgctag tgaccccacc atctaccaaa cgagatgata aaaagctcac gaagcaggtg      1500
     aacgtccaca ccgctgtacg tcacacctac ccctcgacag cgacctgtgc ctgcgacgat      1560
     cgatgccgac agctggactg ctgtgaaaag tttcttcata tgacagctgc tgaacgatgg      1620
     aaacacgtac ggacgagtca cttctgcagt gggtgcctaa gacgtcatcg aaatgagtgc      1680
     cgagacaaca gaacgtgtgg gaaaaatggt tgcacgcaga agcatcatcc cttgttgcac      1740
     gacaatacgg ctaatccaga agctgaaaat agcaagtatg caactaacct ctcacacttt      1800
     accacttcac agccagacgt tttactgcgg tacgtgcctg tgacgttaca cgggcggggc      1860
     aaaagtattg atacggtagc gctgctcgac gaaggctcta ccgtcaccct aatggagcat      1920
     cgcatgatga aggagttagg gttagagggt tccaccaaac ccctctgtct cagagggacc      1980
     ggtggacaag tccgcgaaga aaccgattca atgcaaacga atctctacat ttccggaagg      2040
     cgagcaagcg atcatcggta cgagatatcc tccgtgcaca ccgttcgttc ccttgggctc      2100
     cctccacagt ctgttagtgc ggaaaaactt ggcgagaagt acagccacct aagcgcgctt      2160
     ccgattccat ctttcgactc ggctgtcccg cgcattctga ttggtatcga caactaccac      2220
     ctcacacgac cactcagaac cgttgaagga ccgtcaaatg aaccagttgc cactaagacc      2280
     cggctcggat gggtggtgtc aggatgctgc cgcttacaag atcatggtac gagcttcggc      2340
     agagcaaacc aagagctgcg tcagtcccta aaagaagtga acgtcaacaa gattgcagag      2400
     caggtcaatc ttaccggaac gaagtggaca tccaaccctc tcgcagcacc acacctcggg      2460
     gaagcgtggg aaagcaggtt gatcgaagtg gaaccaataa tcaaccgtga cccgctgact      2520
     gacgtaccag ttgatcgtga ggaagatgac cggctgatgc cgaatcactg tttggtggaa      2580
     tcgtcatcag gggcaaagcc agccgcggaa tacgacgcag atcacgtgca actagcatcc      2640
     ggcaaagtat tggaaaggcc tgtcgtcaaa ttagctgtca tcgatttcgg acaaataagg      2700
     agtgattcca cggatgaaaa cactgcgggg gag                                   2733
//
ID   BEL-11_AA-I repbase;    DNA;    INV; 5258 BP.
XX
AC   supercont1.187;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_AA_;
KW   BEL-11_AA-LTR; BEL-11_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.187; Positions  553140  558397.
XX
CC   Positions [4308-4856] - Integrase core
CC   'ATGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..1479
FT                 /product="BEL-11_AA-I_1p"
FT                 /translation="MEGKMVDRTPSPRSHTPRNCQSCDRPDHAEEEMVQCS
FT                 ICKLWEHFGCAGVDEQVRQHDVKYICKRCEAKQGTSENLIPQLPTDGTRLS
FT                 KGAKAASRAGSKRGKKVPDPPKSTTSSMRVALLEEQLKLVEEELRLKEQEL
FT                 LEQDEMKQRQLKEEERQLEEKRKIAEEERNIRERKLKEELALKIKQQQIRR
FT                 ESLEKRQQIIRQQAEMSSRGGSIPDVGERVGNWLDSQAKGSEGGQKMTCDD
FT                 SQSIDSNLGDVSNEPVVIQPHAAELMGTPKTTRPQHIDSRAQEVSPFNNRL
FT                 TQVQIAARHVLGKDLPIFSGNPEEWPVFISNFEQSTATCGYSDAENLVRLQ
FT                 RCLKGQALESVRSRLLLPASVPHVIKTLRMLYGRPELIIRSLMNKIHQVPP
FT                 PRHDRLETLIHFGLSVQNLVDHLKAASQHNHLSNPALMHELVEKLPGSMRL
FT                 DWAIYKNKNQPATLETFGDFMSGLVDAASEVSFEVSTCTG"
FT   CDS           1962..5258
FT                 /product="BEL-11_AA-I_2p"
FT                 /translation="MDLVMKRDYFGKPTILNFLTATHALKEDQNLSLEGLE
FT                 RRLEREPDLKKRVHEQILDYERKGYAHKATLAELTSVDVDRVWYLPLGVVI
FT                 NPRKPDKIRLIWDAAAKVGNTSFNSRLLKGPDLLSPLPRVLYKFRQHPVAV
FT                 CGDIMEMFHQIRIRSPDCQSQRFLFREHSSDSPQVYVMDVATFGSTCSPAS
FT                 AQFIKNLNADEFASEYPRAAVAIKFHHYVDDYLDSFESVTEAVTVVNEVKL
FT                 VHSKGGFTLRRFLSNEAEVLQKIGEFSEQAPKNLDLERGGKSESVLGIKWM
FT                 PFEDLFMYAFGFRGDLQYILNEGHIPTKREIARVVMSFFDPLGFIAFFLVH
FT                 GKAILQDTWVKGTEWDQKIPEDLNERWRQWSGLFHQLNQLHIPRCYFRSSF
FT                 PKNLDALQLHLFVDASEAAYAGVVYFRLESEKGVQVSLVGAKVKVAPLKTL
FT                 SIPRLELKAAVLGIRLQEAIQSQHTFPISRRFCWSDSGTVLSWIRSQDHRR
FT                 YHKFVAVRVGEILSSTESSEWRWVPSKLNVADLATKWGNGPQLNMDSPWFQ
FT                 GPNFLREDKENWPIQQKIDSTEVELRPVRCHFSHFTPIMDFTRFNGWIKLH
FT                 RVTAYVLRFVENILRKKKGQQLELGVLTSNELRCAEETLWKGAQGEAFPDE
FT                 VAVLTKSKGPPEKRHSIVQKSSVIYTKWPFLDERGVLRSRGRIGAAPHAPT
FT                 EAKFPVILPKDHLITFYIVDWFHRRYRHANRETIFNEIRQRFDIPTLRRLL
FT                 DKVASKCAWCRITKALPKPPAMAPLPEMRLKSFIRPFTYTGLDYFGPVLVK
FT                 VGRSHAKRWVALFTCLTIRAIHMEVVHSLSTESCIMAVQRFVSRRGIPTEF
FT                 WTDNATTFQGTSNEIKATKQALAQKFTTTQTTWKFIPPASPHMGGAWERLV
FT                 RSVKQTIGTVLDESRKPDDETLETVLLEAEAMINSRPLTFIPLESADEEAL
FT                 TPNHFLLGNSSGTKFLPTGPIDNSSTLRSSWKLARFITDEFWRRWIKEYLP
FT                 VITRRCKWFQETKDLEVGDLVLIVGGAARNQWIRGRIEEVFPGTDGRIRQA
FT                 LVRTSMGILRRPAVKLAVLDVEEKCKPGSIASEPDQGLRAGV"
XX
SQ   Sequence 5258 BP; 1460 A; 1273 C; 1310 G; 1215 T; 0 other;
     ttctttaaga tttttgttcg ggttatggaa ggtaagatgg tagatcgcac cccttccccg        60
     cgatctcata ctcctcgtaa ttgccaatca tgcgaccgcc ccgatcatgc cgaagaagag       120
     atggtccaat gcagcatatg taagctttgg gaacacttcg gatgtgccgg tgtggatgag       180
     caggtgagac agcacgatgt gaaatacatc tgcaagcggt gtgaagcgaa acaaggaaca       240
     tccgaaaacc taattcccca acttccgacg gatgggacac gtttgtcaaa gggagcgaaa       300
     gcagcgtcaa gagcggggtc aaagaggggg aaaaaggtac ccgatccacc gaaaagtacc       360
     acatctagta tgcgcgtggc tctcctagag gaacagttga agttagttga ggaagagctg       420
     cggctaaagg aacaggagct tcttgagcaa gacgagatga agcaacggca actgaaagaa       480
     gaagaacgtc agctagaaga aaaaagaaaa attgcggaag aggagcgtaa tattcgcgag       540
     cgcaagctta aggaagagtt ggcactgaaa ataaaacagc agcagatacg aagagaatcc       600
     ttagaaaagc ggcagcaaat catccgtcag caagcagaaa tgagcagcag aggtggttca       660
     atcccagatg ttggcgagag agtgggaaac tggctggatt cccaagctaa aggatcggag       720
     gggggtcaaa aaatgacctg cgatgacagt caatctatcg actcaaacct cggagacgtc       780
     tctaatgagc cagtagtgat ccagccccat gccgcggaac ttatggggac accaaagaca       840
     acacgacccc aacatattga ttctcgagct caagaagttt ctccattcaa caatcgtctc       900
     acacaagtgc agattgcggc acgacacgtc ctggggaaag acctgccgat attcagcgga       960
     aacccagagg agtggcctgt cttcataagc aattttgagc aatcaacggc cacctgcggg      1020
     tattcggatg cggaaaatct agttcgcctc cagcgatgct tgaagggtca agcattggaa      1080
     tcggtaagaa gtcgcctact tctacccgca agtgtacccc acgtcattaa gacgcttcgc      1140
     atgctttatg gtaggccaga gctcattatt cgatcgctga tgaataaaat ccatcaagtt      1200
     ccacccccca ggcacgaccg gttggaaaca ctgatccatt tcggcctctc cgtacaaaac      1260
     ctagtggacc acctcaaggc agctagtcag cacaaccatt tgtcgaatcc agctttaatg      1320
     catgagctag tagaaaaact accaggatct atgcgactag actgggccat ctataaaaac      1380
     aagaatcagc cagcgactct cgaaaccttt ggagatttca tgtctgggct cgtagacgcg      1440
     gccagcgagg tatcctttga agtctcaacg tgtacaggtt aacattgctg gcaaggactg      1500
     tgacactcaa tataaactcg ttgacgcccg tacagtcagt cggctggtac tgccgtcaca      1560
     aaccctgcag tatggagttc tggcacaacg cttccctcat ctacgaggtc ttcccctaca      1620
     agactacgaa ctagttcaac ccaaacttct gatagggctc gataatctga gattgtgcgt      1680
     tccactgaag ctgcgggaag gaaggccatc agaaccgata ggcgcaaaat gtcgactggg      1740
     atggagcatt tacggatgca ttcctggtca atcgtcccag aaggcgatcg tcaatctaca      1800
     tgtagctgca gtttgtgacc cagaccgaga gctgaacgaa cagttgcgtg attttttcac      1860
     cctagagtgt gctggtgttt cgggttcacg cgaggcacct gaatcatgtg acgaaaggcg      1920
     tgctagagag ttgctgacga gcacaacacg gcgtgtttca catggacttg gttatgaaac      1980
     gggactactt tggaaaaccg acaatcctca atttcctgac agctacccac gccctcaaag      2040
     aggaccagaa cttgagtctc gaaggactgg agcgaaggct cgagagagaa ccagacttaa      2100
     agaaaagagt tcatgagcag atcttggatt atgagcgcaa gggatacgca cacaaagcca      2160
     ccttagctga attgacgtcc gttgatgtcg atcgggtatg gtaccttcct ctcggtgttg      2220
     ttatcaatcc tcgaaagcct gacaagatac ggttgatctg ggacgctgca gccaaggtgg      2280
     ggaatacctc cttcaactca aggttattga aaggacccga tctactttct ccccttccaa      2340
     gagttctcta caagttccgt caacatccgg tggccgtctg tggagatata atggagatgt      2400
     ttcaccagat aagaattcga tctcctgatt gccaatctca acggttcctc tttcgcgagc      2460
     actcgtcgga ttcgcctcaa gtgtacgtaa tggatgtggc cacattcggc tctacttgtt      2520
     cacctgcatc ggcacagttt atcaaaaatc tcaacgccga cgagtttgca agtgagtatc      2580
     cgcgagccgc tgttgctatc aagtttcatc actacgtaga cgattactta gacagctttg      2640
     agtcggttac tgaggctgtt acggtggtga acgaagtcaa gctggttcac tccaagggtg      2700
     gctttactct gcgacgattc ctgtccaatg aagctgaggt tctacaaaaa attggagaat      2760
     ttagcgaaca agctcccaaa aatcttgatc tggaacgtgg aggaaaatca gaatcggtcc      2820
     ttgggataaa gtggatgccg tttgaggatc tgttcatgta tgcctttgga ttcaggggcg      2880
     atctccaata catacttaac gaaggacaca ttcccaccaa gcgagagatt gcacgagtgg      2940
     tcatgagctt ctttgatcca cttggcttta tcgccttttt tcttgtgcat ggcaaagcta      3000
     tccttcaaga tacttgggtg aaggggaccg aatgggacca aaaaatacca gaagacctga      3060
     acgaaagatg gcgacaatgg tcaggtctat tccatcaact gaaccaactt cacataccaa      3120
     gatgttactt ccggtcttca ttccccaaga acctcgacgc acttcaactt catttattcg      3180
     tagatgccag cgaagcagcg tatgccggcg tggtttattt ccgcttggaa tcagagaagg      3240
     gcgtgcaggt gtctctggtc ggggcgaagg tcaaggtagc cccccttaag actctttcaa      3300
     ttccaagact cgagttgaaa gctgccgttc ttggaattcg tctacaggaa gcaatccaaa      3360
     gtcaacacac cttcccgata agtcgtcgtt tctgttggag tgactctgga accgtactct      3420
     catggattcg ttctcaagat cacaggcgct atcacaaatt cgttgccgtt cgtgtgggcg      3480
     aaattctgtc ttccacagaa tcgagcgaat ggaggtgggt cccatccaaa ctaaacgtcg      3540
     cggacctcgc aacgaagtgg ggcaacggcc ctcagctcaa tatggatagt ccgtggtttc      3600
     aagggccgaa tttcctacgt gaagacaagg agaattggcc aatacagcaa aagatcgatt      3660
     caacagaagt agagttgaga cccgttcgat gccacttctc acactttact cctattatgg      3720
     acttcactcg tttcaacggt tggattaaac tacatcgtgt gactgcatat gtgttacgtt      3780
     ttgtagaaaa tatactacga aagaaaaagg gtcaacagtt agagcttggc gtactcacta      3840
     gcaacgaact tcggtgcgcc gaagaaacac tgtggaaagg tgcccagggt gaagcgtttc      3900
     cagacgaggt ggctgtcctt accaaatcaa agggtccacc cgaaaaacgt cacagcatcg      3960
     tacagaagtc cagtgttata tacacaaagt ggcctttcct cgatgaaaga ggagttctac      4020
     gaagccgtgg cagaatcggt gctgcacccc acgcaccgac cgaagctaag ttccctgtca      4080
     ttcttccaaa ggatcattta atcacctttt atattgtaga ctggttccat cgccgttacc      4140
     gccacgccaa cagagagacc atcttcaacg aaattcgcca acgatttgac ataccaacgc      4200
     taagacgact tttggataaa gtagctagca aatgtgcttg gtgccgcatt acgaaggcct      4260
     taccaaaacc acccgctatg gccccgctcc cggaaatgcg cttaaaatct ttcattcgcc      4320
     cctttacata tactggtttg gattacttcg ggccagtact tgtcaaggtt ggcagaagcc      4380
     atgccaagcg ttgggtggca ctttttacct gcctcaccat cagggccatc catatggagg      4440
     tagtgcattc attgagcaca gaatcgtgca ttatggccgt acagcgattt gtatcccggc      4500
     gtggtattcc cacggagttt tggaccgaca atgcgacaac cttccaaggt accagtaatg      4560
     aaattaaagc aacaaagcaa gcgctagctc aaaaatttac caccactcaa acaacgtgga      4620
     agttcattcc accagcatca cctcacatgg gcggagcttg ggagagactc gtccgttccg      4680
     tcaaacagac aatcggaact gttttggacg aatctcgcaa accggacgat gagaccctag      4740
     aaacggtctt attagaggct gaagccatga tcaattctcg gcctcttact ttcattccgc      4800
     tagagtcggc agacgaagaa gccctcacgc caaaccactt cttgttgggc aactcatctg      4860
     gcacgaaatt ccttcccaca gggccgatag acaactcatc aaccctaaga agcagctgga      4920
     aactggccag gttcatcacc gacgagtttt ggcgtagatg gataaaagaa tatctcccgg      4980
     ttatcacccg taggtgcaaa tggtttcagg agacgaagga cttggaagtt ggagatttgg      5040
     tcttgattgt tggtggtgcg gctaggaacc agtggatcag agggcgtatc gaagaagtgt      5100
     ttcctggaac agatggacga attcgccagg cattggtacg gacctcgatg gggatcctgc      5160
     gaagaccagc cgtgaagctg gctgttttgg acgtcgagga gaagtgcaaa cctggttcca      5220
     ttgcttcaga gcctgaccaa ggtttacggg cgggggta                              5258
//
ID   BEL-11_AA-LTR repbase;    DNA;    INV; 509 BP.
XX
AC   supercont1.187;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_AA_;
KW   BEL-11_AA-I; BEL-11_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-509
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.187; Positions  552631  553139.
XX
SQ   Sequence 509 BP; 159 A; 102 C; 94 G; 154 T; 0 other;
     tgtgccgacg ggacccctcg tcgcagcaac gctgtcaatc gcggcgcttc gttcatcgat        60
     acgtctactg acagtgacgt tctatgagga atgtcatgct gatcgggctg tcactgaatg       120
     atattcaaaa ctactttgtc atcctgaaag aagatacggc agtgccacaa atttattgaa       180
     tttctatttc taatccttat cactaaagtc gaagctgaat ttaattgaat tgtataaaac       240
     tgttgcttaa tagtaagtag tacggctaaa tctttggttt gtttaaaatc tcaaaagtaa       300
     ttatttaggc acaggaaatc tcaccgagaa atctttgcga cccacacctt ctaaatctaa       360
     tcggttaacc aaaaatgtaa gtcgaatttg agtccctaaa atggattgta accactgatg       420
     caaataaata tttcttttta gcttaaagct aacgtacaac aaattctgcg tctgctataa       480
     ggagttggta gtccgaagtt aacccaaca                                         509
//
ID   BEL-11_AnFu-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-341
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 697-697 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 341 BP; 103 A; 70 C; 94 G; 74 T; 0 other;
     tgttacgaat gtaaacagtc cgaccgagat agatacaaaa catctcaggg cttgcgctgt        60
     ttctccatag agggcggtaa tctcgcctag aggatcccga aggagcccga aacagcgttg       120
     gagcgatgac cgggagatgg gttgacgacc ggcgctagcg aggataaaag tgtgcgtcga       180
     agcgtgatac gcactttttc gatcagaacg cgcatcagaa gcacagtgat ttttttaacc       240
     gctcgctaca caagtgacaa ataaatcgcg ttaaaagaaa ttgtgccgtg ttaattgata       300
     aaagtcgtgg aaagaaaggt gtctgttgcg aagacgcaac a                           341
//
ID   BEL-11_CQ-I repbase;    DNA;    INV; 5946 BP.
XX
AC   AAWU01008510;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_CQ_;
KW   BEL-11_CQ-LTR; BEL-11_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5946
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 175-175 (2011).
XX
DR   GenBank; AAWU01008510; Positions  114966  120911.
XX
CC   'GGGGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..5916
FT                 /product="BEL-11_CQ-I_1p"
FT                 /translation="MFLRSGRVKKVLFPSPSTPTGVLSAPLSICEQKEAAE
FT                 RRRREREMAESIDALDQCCQAAKAKVSRIRKAILDAKQDHKKFAYNALKLY
FT                 AKQVDAAYDEYNSFTNRIYLVDPKKKQEFETKFIDFEELYEFVRIALSEMM
FT                 QQYEDAEKAAAEVAAFEREKQLLALKFRNDTVAVTNVPANPVPYQIPPSLL
FT                 LQQTPLPTFDGRYDQWHKFKARFCDIVDRCTTDSPATKLHYLDKALVGDAQ
FT                 GVIDEQTLNDNNYEGAWRILIERYENIPMVVHGHVTKLLNLKPMARESSLE
FT                 LRRLLDDCTKRVESLEFHKLKMDKMAEAIVITLLTSKLDPSTRRSWEASCD
FT                 YGKLPVFKDTVAFLRKHSHVLERCEQSSTVTKPKVAALRTQTPTVTSKAHS
FT                 VTVSKTNEGCAVCGATHSVEACGAFKKLIVEERYSKAKQFGLCFLCLNRGH
FT                 RTNTCKKTDLCTACKKKHHALLHPDEKKLDTPEAGRRSAEEQETSSSCPKP
FT                 PLTAAKCSIPNERTKSLQTKQVLLATAVVLAYDSSGAAHKCRVLLDSGAMA
FT                 NFMSTRMAELLRLRKESANVPIDGVNGMKTVVKYKVSAKVVSRTTSFETTL
FT                 EYLIVPRVTGALPAMKIDPKGWHIPESMLLADPKFYEPARVDMLVGAELFF
FT                 DVLREGKLKLAPNLPLLQESQLGWLVSGPVAETADIGTVKVCHIGALDDPE
FT                 EQLTELLRRFWTIDELGGDASPKPEDTCELNFLETHRRTNDGRYVVKLPFR
FT                 ENVGELGESRQQAMRRFVALERRLEKYPVMKQMYVDFINEYLALGHCRVVT
FT                 SAEPTNADAYYLPHHCVIKPDSSTTKLRVVFDASAKSSTDLSLNDVMEIGP
FT                 TVQDSLFNILLRFRLHKFVFTADVPKMYRQVIVDEAHRKYQRILWRDNAGQ
FT                 PIKELELNTVTYGTAAAPFLATRAIVQLARDEQKDFPVASKVVEECFYVDD
FT                 VLTGADSLPEAKELQRDLIALLERGGFQLHKWCANDESLLEDIPVDAQEQQ
FT                 FNLDDCNASGVVKALGILWDPVGDEFMYHVQPFNGCSEVPTKQMVLSEMSK
FT                 LFDPHGLLAPTILIAKLLMQQLWQANVGWKDPIPQEQLRTWNRFRSELSCL
FT                 NSLRINRRITVDDAVDVELHGYADASKVAYGCSIYLKSFKRDGTTEMQLIC
FT                 GKSRVAPMKELQRNEKQDATPDEQTIPRLELCAALLLAEILEKVRETLAIP
FT                 IEKVKLWSDSKIVLCWLKRMKPGTPVFVQNRVKKILKLFPAHMWHYISTLH
FT                 NPADLVSRGVFPAELIHCDGWWFGPVEHAEPWQQNCEAELEPEEHGEPLQV
FT                 VAAVLPNEPKKQLDPYDVILEQSDYRRLQRVFAHLTRFIFNCRSKQNKVAR
FT                 RTGRLGGRDFGEAQRAMVSVVQQFVYKDEIDCIQKNRAVKGKLRNLNPIYD
FT                 KDDKLLRVGGRIRNSDLPKDQKHPMILPENNHFTEILVKALHKEHLHVGLN
FT                 GLLAVIRRRFWPVNAKRTIHRVLKGCVDCFRVNPTDVQQYMGDLPSCRVTA
FT                 SQPFARTGMDYAGPFYVKVGRMRSKVKVYVCLFVCMAIKAVHLELVGSLTT
FT                 EGFLAALQRFVNRRGTPSELYSDNGTNFRGGNRELSELVELLRSQILQKKV
FT                 DAFCQPRGITWNFNPPKAPHQGGIWEANVKCMKSHLCKTLTESYLTFEELN
FT                 TLLIQVEGILNSRPLVQLTDDPFDYEALSPGHFLVGRELTAVAEPLYDDWK
FT                 ESSLSRYQLVQKRMQHFWKRWSSEYVTGLQKRGKWYKEPALLRKGMLVLLK
FT                 EDNVPPKTWKLGRIIETHPGKDGIVRVITVRTGNGVYKRPTTQIAVLPIDD
FT                 NRVPAESQE"
XX
SQ   Sequence 5946 BP; 1528 A; 1455 C; 1769 G; 1194 T; 0 other;
     tttggtccac gtcgagccgg atgtgggatc agtggaattg aaggacagtt tctcggttcg        60
     tgcgcgagtc gggaaagaat cgacgtgttc cgcgacggtt gcgacggtcg tggcgcgaga       120
     ttccgcttgc acgcgctgca gcggatagtg gttccggaga ctgcggttac cggacgggag       180
     tttctgcgcg gtcgagtccg accgaaagaa gattccgggt gcttgcgagt gccggggaag       240
     tgaaggtcgg tgtgcagaaa cgtgaaagag gctggacggg cgaaaagtga aagtggaggt       300
     ctaacctcaa aataggaaga gccggaactt gcgagttcct gaaaagtgga aagacctcgc       360
     tggaagattc cgatacggat tgaagcgaga aaaaagtgag aaaaagaagt gcgatttcgg       420
     gtgatgtttt tacgctctgg gcgcgtaaag aaagtgctgt tcccttcacc ttcgacgcca       480
     acgggtgtgc tgagtgcgcc gcttagtatt tgtgagcaga aagaagcggc ggaaagaaga       540
     agaagggagc gagaaatggc cgaaagcatc gatgcgttgg accagtgctg ccaggcagcc       600
     aaggcaaaag tgagtcgtat tcggaaggcg attttggatg caaaacagga ccacaaaaag       660
     tttgcgtaca atgctctcaa attgtatgcg aagcaagtcg acgcggccta cgatgagtac       720
     aacagcttca cgaatcgcat ctacctcgtc gatccaaaga agaagcaaga atttgagacg       780
     aagttcatcg acttcgagga actctacgag tttgtccgga tcgctctgag cgagatgatg       840
     cagcagtacg aggacgccga aaaggctgcg gccgaggtgg ctgcctttga gagggagaaa       900
     caactgctcg cgctgaagtt ccgcaacgat actgtcgcag ttactaacgt cccagcgaac       960
     cctgttccgt accaaattcc accttcgttg ctgttgcagc agacgccttt gccgaccttt      1020
     gacggtcggt acgaccagtg gcacaagttc aaagcaaggt tttgcgacat tgtggatcgg      1080
     tgcacgacgg attctccagc gacaaaactc cattatctgg acaaggcgtt ggtcggagat      1140
     gcacagggag tgattgacga gcaaaccctc aacgacaata actacgaggg cgcctggaga      1200
     attctaatcg agcggtacga gaacatccca atggtggtcc atggtcacgt cacgaagctt      1260
     ctgaacctga agccgatggc tagggagtca tcgctggaac tacggaggct gctggacgac      1320
     tgcacgaagc gtgtggaatc cctagagttc cacaaactaa agatggacaa gatggctgag      1380
     gccatcgtga tcacgctgct gacctcgaag ctggacccga gtacccgacg cagctgggag      1440
     gcatcgtgtg actacggaaa gcttccggtg ttcaaggaca cggtggcatt tttgcgaaag      1500
     cactcacacg tgttggagcg gtgtgagcaa agcagtacgg tgacaaaacc caaagtggcg      1560
     gcactgagga cccagactcc aaccgtcaca agtaaggcgc actcggtgac ggtctcgaag      1620
     acgaatgaag gttgtgccgt gtgcggagct actcactcag tcgaagcttg tggcgcattc      1680
     aaaaagctga tcgtcgaaga acgatactcg aaggcaaagc agtttggatt gtgcttccta      1740
     tgcctgaatc gtggccatcg caccaacact tgcaagaaga ccgatctgtg cacagcttgc      1800
     aagaagaagc accacgcgct gctgcatcct gacgagaaga aactcgatac gcccgaagca      1860
     ggacggcgat cggcggagga gcaggagacg agttccagtt gcccgaaacc accgctgacg      1920
     gcggcgaagt gttcgatccc gaacgaacga acgaagagtc tgcagacgaa gcaggtgttg      1980
     ctggcgacgg cagttgtgtt ggcgtacgac tccagtggcg ccgcgcacaa gtgtcgagtg      2040
     ctactcgact ccggagcgat ggcgaacttc atgtcaacac ggatggcgga actgctgcga      2100
     ctgcgaaagg agagtgctaa cgtcccgata gacggagtga acgggatgaa gaccgtagtg      2160
     aagtacaaag tgagtgctaa agtggtatcc agaacaacca gtttcgagac gacgttggag      2220
     tacttgattg tcccccgagt gaccggcgct ttaccagcga tgaagatcga tccgaagggc      2280
     tggcacattc ccgagtcgat gctgctggcc gaccccaagt tctacgagcc agcgcgggtc      2340
     gatatgctcg tcggcgccga gctatttttt gacgtgctcc gagaaggtaa actaaaactg      2400
     gcccccaatc tacctctgct tcaagaaagc caactcggtt ggcttgtctc tggacctgtg      2460
     gccgaaactg cggatatcgg cactgtgaag gtgtgtcaca ttggggcact ggacgatcct      2520
     gaggagcaac tgaccgaact gctgcggcgg ttctggacca tcgacgagct cggaggtgac      2580
     gcgtcaccta agccagaaga cacgtgtgag ttgaacttcc tggaaactca ccgcagaacg      2640
     aacgatggtc gctacgtggt gaaattgccg ttccgcgaga acgttgggga gctcggggaa      2700
     tcccgacagc aagcgatgcg gcggttcgtg gcgctagagc gccgcttgga gaaatacccg      2760
     gtgatgaaac aaatgtacgt cgacttcatc aacgagtatc tggcactggg tcactgccga      2820
     gtggtgacaa gtgccgagcc aacgaacgca gacgcctact accttccgca ccattgcgtg      2880
     atcaagccgg acagctccac aacaaaattg cgagtggtat ttgacgcctc agcgaagagc      2940
     agcacagatt tgtcgttgaa cgatgtgatg gagatcggac ccacggtgca ggactcgttg      3000
     ttcaacattc tcttgagatt tcgcttgcac aagttcgtgt tcaccgccga tgtcccgaaa      3060
     atgtaccggc aggtaatagt cgacgaagct caccggaagt atcaacggat cctgtggagg      3120
     gacaacgctg gtcagccgat caaggaattg gagttgaaca cagtcactta cgggacagca      3180
     gcagcaccgt tcttggcgac tcgagcgatt gtacagctgg cacgagatga gcagaaagat      3240
     tttccggttg cgagcaaggt cgtcgaggag tgcttctacg ttgatgatgt gctaactggg      3300
     gctgactcac ttccggaagc aaaggagctt caaagagatt tgatcgcgct gttggagaga      3360
     ggagggtttc agctccataa atggtgtgct aacgacgaat cgctgcttga ggatatccca      3420
     gttgacgctc aagagcaaca gttcaacctc gacgattgca acgccagcgg cgttgtaaaa      3480
     gcgctcggaa tcttgtggga tccagtcgga gatgaattta tgtaccacgt tcaacccttc      3540
     aacggctgct ctgaagttcc gacgaagcaa atggttttgt ctgaaatgtc aaaacttttc      3600
     gatccccacg gcctgcttgc accaaccatt ctgatcgcga aactcctgat gcagcaactt      3660
     tggcaagcga atgtgggatg gaaggacccg attccgcagg agcagcttcg aacctggaac      3720
     cgatttcgat ctgagctaag ctgcctgaac tcgctgcgga tcaatcggcg aatcactgtt      3780
     gacgatgcgg ttgatgtgga gctgcacggg tacgccgacg cgtccaaggt ggcgtacggg      3840
     tgctcgatat acctgaaaag cttcaagcga gacggaacga cggagatgca gctgatctgc      3900
     gggaagtcgc gtgtcgcgcc aatgaaggag ctgcagcgga acgagaagca ggatgcaacg      3960
     cctgacgagc agacgattcc gcggcttgag ctgtgtgctg cgttgttgct agccgaaatc      4020
     cttgaaaaag tgcgcgaaac cttagcaata cctatcgaaa aggttaagct ctggtccgac      4080
     tcgaagatag tgctgtgttg gttgaaacga atgaagcctg gtacgccagt gttcgtgcaa      4140
     aatcgtgtga agaagatcct gaagctgttt cctgctcaca tgtggcacta catctcgacg      4200
     ctgcacaacc ctgcggattt ggtgtcgcgt ggggtctttc cggcagaatt gatccactgc      4260
     gatggttggt ggttcggtcc cgttgagcac gctgaaccgt ggcagcagaa ctgcgaagcg      4320
     gaattggaac cggaagaaca cggggaacct ctccaggttg tcgctgcagt tctacccaac      4380
     gagccgaaga aacagctgga cccatacgac gtgattttgg aacaaagcga ctatcgcaga      4440
     ctgcagcgtg tttttgcgca cttgactcgc ttcatcttca actgccgatc gaagcagaac      4500
     aaggttgcgc gtagaacggg acgacttggc ggccgagact tcggtgaggc gcaacgagca      4560
     atggtgagtg ttgtgcagca atttgtctac aaggatgaga tcgattgcat tcagaagaac      4620
     cgtgccgtca agggaaagct gcgaaacctg aacccgatat acgacaaaga cgacaagctg      4680
     ctccgtgtcg gtggtcgtat aagaaattcg gatctgccca aggaccagaa acacccaatg      4740
     atcctgccgg aaaacaatca cttcacggag atccttgtca aagctctgca taaggaacat      4800
     ctccacgttg gactcaacgg actgcttgcg gtcatccgac gacggttctg gccagtaaac      4860
     gctaaacgaa ccatccaccg ggtcctgaaa gggtgcgtag actgcttccg ggtgaaccca      4920
     acggacgtcc agcagtacat gggtgacctg ccgagctgcc gagtgaccgc ttcccaaccg      4980
     tttgccagga ctggaatgga ttatgccggg ccgttctacg tcaaagtggg acgtatgaga      5040
     tcgaaggtga aggtgtacgt gtgtcttttt gtatgcatgg caatcaaggc cgtacaccta      5100
     gagttggtgg gctccctgac gacggaagga ttcctggcag ctctacagcg atttgtgaac      5160
     cgacgaggga cgccgtccga actatattct gataacggaa caaactttcg aggaggaaat      5220
     cgagagctgt cagaattagt cgagttgctg cgatcccaga ttctgcagaa gaaggtggat      5280
     gcattttgcc agccgagggg aatcacctgg aactttaacc cccccaaggc accccaccaa      5340
     ggaggcattt gggaagcgaa cgtgaaatgc atgaagtcgc acctgtgcaa gaccttgact      5400
     gagagctacc tgacctttga agaactgaac accctgctca tccaggtaga aggaatcctc      5460
     aactcaaggc cccttgtgca gctgacggac gacccctttg actacgaagc actgagtccc      5520
     ggccattttt tggttggacg agaattgacc gcagtggcgg agccactgta cgatgattgg      5580
     aaggagtcga gtttgtcccg ataccaactg gttcagaaac gtatgcagca cttttggaag      5640
     cgatggtcaa gcgaatacgt cactggactg cagaagcggg gcaaatggta caaggaacct      5700
     gcgctacttc ggaagggaat gctagtgctc ttgaaggaag acaacgtgcc accgaagact      5760
     tggaagctag gccgcatcat cgaaacacat ccagggaagg acgggatcgt acgtgtgatc      5820
     acggtgcgaa caggcaacgg agtctacaag cggccgacga cgcagattgc ggttctaccc      5880
     atagacgaca acagagttcc agcagagtcc caggagtagt gaggccttgc cccaccgggg      5940
     ggagga                                                                 5946
//
ID   BEL-11_CQ-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   AAWU01008510;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_CQ_;
KW   BEL-11_CQ-I; BEL-11_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 176-176 (2011).
XX
DR   GenBank; AAWU01008510; Positions  114731  114965.
XX
SQ   Sequence 235 BP; 77 A; 47 C; 48 G; 63 T; 0 other;
     tgtttcgcgc aaaataacct aagagtgtaa gaaacgttgt agcgttctaa atttgacagc        60
     tagtctctag aattttcttg tcgccactgg cggaaatagt taacgaagag gaggagaaga       120
     agaaatacaa gtaaaaagct actcgcgcgg taaagacgtg ttttttattc cgcaataaat       180
     ctagttttca atacagtcca cgcgttccct tttccactga ccaatccgaa gaaca            235
//
ID   BEL-11_DAn-I repbase;    DNA;    INV; 2056 BP.
XX
AC   AAPP01019540;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAn_;
KW   BEL-11_DAn-LTR; BEL-11_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2056
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019540; Positions  436139  434084.
XX
CC   'GTATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..2055
FT                 /product="BEL-11_DAn-I_1p"
FT                 /translation="MESGSEIIGAAAANRERMLRRRAEVACQEMEALHHKV
FT                 KAAARTEDSSIMALESVEKRLRERFTALQEELEELNFSEIGSDLYWRFSQL
FT                 ATDVEVEIQLEVAKRSIRIAAHSTLLDGASVSPMPNKQAPSLPPLPMPTFS
FT                 GGYAEWPDFCALFKTTIDSHPHLTKMEKLRWLISCLRESALDTVRALEIND
FT                 ANYDVALDLLRNRFSNRRLIFQSHINEILQLRVVEPGSVTTLRELSDRFNG
FT                 HMRALMSSGSAAEIQGCLLIQIILQKLDPATRAKWEDTLAGSNDSIPSWES
FT                 MARFLEQRCRTLECVEFSLAASPPANQVGRGRSWNNRSSCMVINARPALCA
FT                 LCGISEHELPSCSKFSALTIEERYDEVRRLARCFVCLEDGHLARGCSASRC
FT                 STCNHRHNILLHPRGQISPARVSRPIGAVTVAHPSRSINPVMNKDRNAELV
FT                 LLPTANVLVRGRSGAFLPCRVLLDSGSQVHLISSRLANELQLGRSKCSTTV
FT                 AGFGGAGFDTDGASVNVCLKSRLSTYSVEIEAVVASHITDYQPSQDIDASH
FT                 WKIPGNLDLADPNFYKTQRVDLLIGASLFFDLLSAGQIQLGHGLPIAQNTR
FT                 FGWVISGRGELSRDVSSLYARKDNPRNTHWNDVTAAPSNSVIEGPPFNGGR
FT                 "
XX
SQ   Sequence 2056 BP; 450 A; 515 C; 558 G; 533 T; 0 other;
     ttggtgaccc cgacgtgatt tcatcccggt ttattattgt tatcagcatt aaaagtgcca        60
     agaaaacgcc cttgttgttg ttgctacaag ttgcatttta attgaagaat ggagtctgga       120
     tctgagatta ttggagctgc tgccgcaaac cgggaaagga tgctgcggag aagagcagag       180
     gtggcctgcc aagaaatgga ggcgctgcat cataaggtga aggctgcggc gcggactgag       240
     gattcttcca ttatggcgct ggagtcggtg gagaagcgtt tgcgtgagcg gttcaccgcg       300
     cttcaagaag agttggagga gcttaatttt agcgagatcg ggagtgatct gtattggaga       360
     ttctcgcagc tggcgactga tgtggaagtg gaaattcagt tggaggttgc caagcgctcc       420
     attagaatcg ctgcccactc cacacttctc gacggtgcca gtgtatcgcc aatgccaaac       480
     aagcaagccc cctccttgcc accgttgccg atgccaacat tcagcggcgg ctatgccgag       540
     tggccggatt tctgcgccct ttttaagacc acgatcgaca gccatcctca cctaacgaaa       600
     atggaaaagc tccggtggct catttcatgc ctgcgcgagt cagccttgga tacggtgaga       660
     gctctggaaa ttaatgacgc gaactacgat gtggcccttg acctattgcg caatcgtttt       720
     agtaatcggc gtttaatatt tcagtctcac attaatgaga tcctgcagct tcgtgtggtc       780
     gagccaggat ctgttactac tttgcgggag ctatcggatc ggttcaatgg gcatatgcgg       840
     gctcttatga gttccggatc agctgccgag atccaaggat gtttgcttat ccagattatc       900
     ctgcagaagt tggacccagc cacaagggcc aagtgggaag acactctcgc cggaagcaac       960
     gacagcattc cgtcttggga gtccatggca cgattcttgg agcaaaggtg ccggactctt      1020
     gaatgcgtcg agttttcttt ggcggcgtct cccccagcta accaagtggg ccgaggtaga      1080
     tcttggaata accgatcttc gtgcatggtt attaacgccc gtcctgctct atgcgccctg      1140
     tgtggcattt cggagcacga gcttccttct tgttcaaaat ttagtgcttt gacaattgag      1200
     gaacggtacg acgaagtgcg gcgtctggct cgatgttttg tttgtctgga ggatggccat      1260
     ctcgctcgtg gatgctcagc ttcccgctgc tcgacgtgca atcaccgtca taatattttg      1320
     ttgcaccctc gcgggcagat ttcacccgca cgagtctccc gtcccatcgg tgccgttact      1380
     gttgcgcacc catcccgctc aatcaaccct gttatgaaca aggatcgcaa tgctgagcta      1440
     gtgctcctgc caacagccaa tgtactcgtt cgtggtcgat ctggagcctt cttgccttgc      1500
     cgagttttat tggattccgg ctcacaagtg cacctcatct cgtcgcggct ggcgaatgaa      1560
     cttcagcttg gccgttccaa atgctccact acggtggcag gtttcggcgg cgctgggttt      1620
     gatacggatg gagcatccgt caatgtgtgc ttgaagtccc gccttagcac gtactcagtg      1680
     gaaattgagg ctgttgtagc ttcacatata acggactatc aacctagcca ggacatagat      1740
     gcttcgcact ggaagattcc tggcaatttg gatctagctg accctaactt ctacaaaacg      1800
     cagcgagtgg acctgttgat tggagccagc ttattctttg acctattgtc ggctggtcaa      1860
     atccaattag gtcacgggct tcccattgcc cagaatacgc gatttggctg ggtgatttct      1920
     ggacgcggtg aactatcacg ggatgtgtcg tcgctctatg ctaggaaaga caacccaagg      1980
     aatacccact ggaatgatgt gactgctgcc ccttccaaca gtgttattga aggcccaccc      2040
     ttcaatgggg ggagga                                                      2056
//
ID   BEL-11_DAn-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   AAPP01019540;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAn_;
KW   BEL-11_DAn-LTR; BEL-11_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-322
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019540; Positions  434083  433762.
XX
SQ   Sequence 322 BP; 75 A; 59 C; 73 G; 115 T; 0 other;
     tgttgggcca agcagccacc aaaaggtgca tttaaaataa tcataaaatg ctaagctgca        60
     gctgttgtta tcagcatgtt ttcgtctctg ttttgtctcc cagtttcgca tgcgctttat       120
     tgttatttgt agcgtatgcg ctttggggag ctttggttga gcttctgcgc aagctcttag       180
     gtttttatga cttgtaattc ggcattgttt tggaccggtc gcggaatttg ttttggggtt       240
     aaattgaccc ataataaatt gatttgtaaa attgaacctg gtctattaat tcggccgcta       300
     tcaaaacgct gatagctcaa ca                                                322
//
ID   BEL-11_DAzt-I repbase;    DNA;    INV; 7681 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7681
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 756-756 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1297..6591
FT                 /product="BEL-11_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPIDPAKNKPKLLSDPSQAVDPRSPVTRSVGQTLKIK
FT                 GMASLTAFISVTDRLTQFESKFVSNAEVSLHTLKVRQDQIRSLWDKVEQEF
FT                 ERCSKALAESADRSGETDTVTLHAKYDHCYAAYERCASMLSEQIENLTVPR
FT                 ALPNVAQQPRGCRVPPVDTEVFAGDYLKWPTFRDIFTAVYINHPGLTQVEK
FT                 LFHLNAKTSGDAKAIVSKSPLTNDGFASAWQALVSRFENKRLLVNSQLRIL
FT                 FNVQPISHESGTALKDLQSTIQGCLSALELSNISTENWDCLLVFMCSSKLP
FT                 KITLSLWEQSLQSKVDIPTWKELNTFLLERYRTLEAIEDVRPHVVPPLAVK
FT                 ATRREPPSNRLNSFEAKVTAKIQTCRLCAKENHPFRTCPKFLRMSVHERSD
FT                 TIKQHKLCLNCFARGHNLRDCTSAHNCHTCKGRHHTLLHRPTNTQAGDPGV
FT                 VLDSSVNIQSTPLPQPTVQNYFSESTHSVLLGTAIIHVCSLGNKYTARALV
FT                 DSGSEATFISERLFKLIRPQYQSVDAQVSGLNGTIAAQPQRLCQFHIGSPI
FT                 KPRIQIETSGFVLPKLAGNLPSYTIPQSALEDLPDLQLADPEFYKSSQIDI
FT                 LLGADILPSILLKGSCTNICGTLLGQETIFGWTITGPVSNTGAKAISSFAT
FT                 RITLNEEVRLEKLLTKFWEVEDIPVKLVKESDAACERLFQQTLTRNERGRY
FT                 VVTLPFKNPDSIDLGHSRSIALAQLLRNENRLKKDSSLKEQYDKVLQEYSD
FT                 LGHMRPVPSTNGPNNFYLPHHAVHKPESTTTKLRVVFNASSPSSNGKSLND
FT                 VLHPGPVLQSDLTTQILKWRVFRYVFNADINKMYRQILVAPQHAPYQRILF
FT                 RDPAGDVRDYELNTVTFGVNCAPYLAIRVLRQLAQDVRSEFPLASDILANY
FT                 MYVDDVLAGAHTQAQAVSAITELRQALKSAGFPLRKWTANQKGVLRDIPVD
FT                 HRLRADFLELEESSIAKTLGIRWQASADEFFFVSPELVTQASCTKRNVLSQ
FT                 IAKLFDPAGWLAPFVIQAKMFMQEIWLREIGWDDVLPSDLSQTWENFLQSF
FT                 PAVQAIHIPRWLHVCPAAKVQIHGFCDASQRAYGAAIYIRVEQPQGTFCNL
FT                 LTAKTRVAPVKTVSLPRLELCGAVLLAELSSAILPQMPFDTSQVSFWTDST
FT                 IVLAWLNRPACDWTTFVGNRVAKIARCSPNVRWSHVRSEDNPADLASRGLG
FT                 PKDLSTNDMWWHGPAWLRCPPSEWPCPLAISPETDLERRTIKVHHASSSAT
FT                 DILSRFSDLGRALRVLAYVRRFARRCRRESIHPDKNPSRDELAAALQAVTI
FT                 VTQKIHYANEHQCLATKRPLLASSSLRSLNPFVDRNGAIRACGRVQASASM
FT                 SYNERHPIILPPACTLVRLLVRFTHHIALHSGNQVVVRLLRATYWIPRLRH
FT                 VVRAVIHSCKVCVIQRKRLQTQLMGDLPSTRVTFSRPFTYTGVDFAGPFDV
FT                 KSFTGRACRLTKGYVCVFVCFTTKAIHLEATSDLSTDTFLAAFARFVARRG
FT                 CPHEVHSDNGRNFVGASRALAQDLLETVKARTSEVYSQQGLAWRFIPPGAP
FT                 HMGGLWEAGVKSFKALFQRSMCTYKYTLEEFSTFLSKIEACLNSRPISPMS
FT                 EDPTDPLALSPGHFLVGGPLLSVAEPEIRESASSILNRWQHLKALNQQFCS
FT                 RWKTEYLRELHKRNKWQHPTRDLEIGDLVVIKEDNTPPQEWRLGRVQKTYP
FT                 GADDKVRVIDLLTARGLIKRPIAKVVLLPMDSAIHSCYASVYAGP"
FT   CDS           6696..7619
FT                 /product="BEL-11_DAzt-I_2p"
FT                 /translation="MAPRQSRRSRSQEQAEEGRRTRGTTSYRCRVCRGVHP
FT                 LRKCGRFLRLSAEKRLRAALINKYCANCLAHEHSGRDCRSGDRCKHCRGNH
FT                 HTLLHTPNSDRRRPAPAAPSARAPAPSTPSVRAPAPSTPSERAPPPTTSSA
FT                 CSTRPPTLATLLQHRNPPVLPTATVKIDNGVTVYETRALIDPCRPVSVINA
FT                 SLARAFKLQTVAIGKEEACTAVIRSPITSDFKLEVVLQVDPKLHLRTPAAA
FT                 IDPGLRKRVRHLTLADDRFDHPAIVALILGADVYGDVVREGMLASTEGLPV
FT                 AQHTVFGWTLSGAYRT"
XX
SQ   Sequence 7681 BP; 1897 A; 2278 C; 1758 G; 1748 T; 0 other;
     ttggtccttc gagccggatc ctcgctctga ttttaagatc acggatactc ttccccccaa        60
     tccgctcgcc ccagcaatca tcgttggaat tccgcaatcc aaaggagaaa aagcccagat       120
     aagtaatata cactcctgat atactactgc acattgccaa gtggcaactc ctgtgcaaat       180
     atctgtattt atccttggtg ctttcccctc cgaacactcc gttcaaatat ataatttgtt       240
     tcctacagtc cgatccatat ccagccgcca tatctgcact tttgtataca tatgtatgca       300
     aacctgtccg cacataggct tgtacataag gcgccatatt gtggaaacat atgtccaaat       360
     atttttcaat gaatatccaa atactttcca atacatataa tttcccaatc ctcccaataa       420
     aaagttcagg ttattgttga tattcgttcc tttgttaatc atttattggt gaattcttgt       480
     acttatatat gtacatgaac atgcatgccg gcacttgagc gtacatacac ttgtacagac       540
     atacatacat acattgttgc tgacatatgc acggcacatt ttacaagaaa cttccaacat       600
     atataagact aattaaacag agttcacgcc accaaatata acagataaca caacatatac       660
     ctcaaccaaa atttctgcac atgcccacag tcacaagtgt attcaaaaat ataaagtgtc       720
     acacgaatct atttacatac actttattta cacatccaaa aacacggcgg tcaaagcaat       780
     cgtaccacaa ctccaatcac gtacgcattg cctgcattta ataataaaac accacaacat       840
     aaacacgaat cactatatta atttatttta ttaaacataa aaaataaaac acaaaatctc       900
     caattacttg tttattatac acccatacat acatactcat tacatatcga tatcgatacc       960
     accgcactag cagaaaaata ctcaaagaat attctagacg gtcccaccgt ctagcatcac      1020
     atctgcatcc gcatccaata tcacatcaca tctgcatccg catctactag cacatcattc      1080
     ataaactagt attttttctt ggcctagcta ttgttattat tagaatataa aaagcaatac      1140
     ttgttttgtg gtccgtgccg cttatattaa ataattatta atatttatct attatttggt      1200
     cggtccattc cactgttccg aactgtcctg ttcccactgg tttatcggtc ccaagaatat      1260
     tttccgcgag tcttcgtggc tgcctaagat cctagcatgc caatagaccc tgcaaaaaat      1320
     aaacctaagc tcctttccga tccaagtcaa gccgttgatc cgcgttcacc cgttactaga      1380
     tcagtcggtc agacccttaa aataaaaggt atggcttcgc ttactgcttt catttcggtg      1440
     accgatcgcc tcactcagtt tgagtccaaa tttgtctcca atgccgaagt gtcactgcac      1500
     acgctcaagg tccgacagga tcagattcgg agcttgtggg acaaggtcga acaagagttc      1560
     gagcgctgtt ccaaggcgct cgctgagtct gcggaccgga gcggcgaaac agacacggtc      1620
     acccttcacg ccaagtatga ccactgctac gcggcatacg aacggtgtgc gtccatgcta      1680
     agcgagcaga tcgagaacct tacagttcca cgggcgcttc caaatgtggc acagcagcca      1740
     agaggctgcc gggtaccacc tgttgacacc gaagtctttg ccggagacta tttgaaatgg      1800
     cccacgttcc gggacatctt caccgcggtg tacatcaacc atcctggcct gacccaagtg      1860
     gagaagctct tccatttaaa tgcaaagacg agtggcgatg ccaaagctat tgtctccaag      1920
     tccccgctta ccaacgatgg gtttgcgtcc gcatggcaag ccctcgtcag cagattcgaa      1980
     aataaacgac tgctagtaaa cagccaactc cgaatcctct ttaatgtgca acccatctct      2040
     catgagtcgg ggactgcatt aaaagattta cagagcacca tccaagggtg cctatcggct      2100
     ctggagctat ccaatatctc cactgagaat tgggattgtc tcctcgtgtt catgtgttcc      2160
     tccaaacttc caaagatcac cctatcccta tgggagcaat cgctccaaag taaggttgat      2220
     attccgactt ggaaggaact aaacacgttc ctactggagc ggtatcgaac tctagaggca      2280
     atcgaggatg taaggccaca tgtagttcca ccgctggcgg ttaaggcaac cagacgggaa      2340
     cctccatcca accgactgaa ctcctttgag gccaaggtca cggccaagat tcagacttgc      2400
     cgactttgcg ccaaggagaa ccatccattt cgaacatgcc cgaaattcct gcgaatgtcc      2460
     gtccatgagc gatccgacac catcaaacaa cataaattgt gtttaaattg ctttgccaga      2520
     ggtcataacc tgagggactg cactagcgcg cataattgcc acacctgcaa gggtcgtcac      2580
     cacactctcc tacatcgtcc gacgaatacc caagcgggtg atcctggagt agttttggat      2640
     tcctccgtca atatacagtc cactcctctc ccacaaccaa cggtccaaaa ctatttctcg      2700
     gaaagcacgc atagcgtcct cctcggcacg gcaataatcc atgtatgttc cttagggaac      2760
     aaatatacag cgcgtgcatt ggttgactct gggtcggaag caaccttcat ttccgaacgg      2820
     ctgttcaaat tgatacgacc ccagtatcag tcggttgacg ctcaagtctc agggctcaat      2880
     ggaaccattg cagcccagcc tcagcgacta tgccagttcc atattggctc tcctattaag      2940
     ccgaggatcc aaatagagac ttcgggtttc gttcttccaa agctggcagg aaatctgccc      3000
     tcctatacaa ttccacaaag tgctttggaa gatcttcccg atctgcaact ggcagatccg      3060
     gaattctaca agagttccca gatagatatc ctactgggag ccgacatcct tccctccatt      3120
     ctgctaaagg ggtcctgtac caatatctgt ggtacccttt taggacagga aacgatcttt      3180
     ggctggacca tcacgggtcc cgtttccaac actggcgcca aggccatatc atctttcgcc      3240
     actcgcatca cgctcaacga ggaagtgaga ttggaaaaac ttctcacaaa gttttgggag      3300
     gtggaggata tcccagttaa actggttaaa gagtccgacg cagcttgtga gaggttgttt      3360
     cagcagacgc tcacaaggaa cgagaggggc agatatgtgg tcacccttcc tttcaagaat      3420
     cctgattcca ttgaccttgg tcattcaaga tctatcgcac tagctcagct cctacgtaat      3480
     gagaatcgct tgaaaaagga ctcatccctg aaagagcagt acgataaggt ccttcaagag      3540
     tactcggacc ttggccacat gagaccagtt ccgtccacaa acggcccaaa caatttttat      3600
     ctccctcatc atgcggtcca taagccagag agtaccacca caaagcttcg cgttgtgttt      3660
     aacgcctcca gtccgtcctc aaacggcaaa agcctcaacg acgtcctaca tccgggaccc      3720
     gttctccaat cggatctgac tacgcagatc ttaaagtggc gcgttttccg atacgtgttc      3780
     aatgctgaca tcaataagat gtatcgccag attctggtgg cgcctcaaca tgccccgtat      3840
     cagcgcatcc tcttccgcga tcctgccgga gatgtgcgtg actatgagct caatacggtc      3900
     actttcggag tcaactgcgc gccgtacctc gccattcggg tcctacgaca gctcgcacaa      3960
     gatgtgcgct ccgaatttcc actggccagt gacattctgg ccaattatat gtacgtagat      4020
     gacgtattgg cgggtgcgca cactcaggct caggcagtct ccgccattac agagctacga      4080
     caagccctca aatcagcagg gtttcccctc cgaaagtgga ccgccaacca gaagggcgtt      4140
     ctgcgcgaca ttccagtcga ccaccgatta cgagctgact tcctagagct cgaagagagc      4200
     agcattgcga agaccttggg gatccgatgg caagccagtg ccgacgagtt ctttttcgtc      4260
     tcccccgaat tagtcactca ggcgtcctgc acgaagcgca atgttctgtc ccaaattgcg      4320
     aagctattcg atccagcagg atggcttgcc cccttcgtca ttcaagcgaa gatgttcatg      4380
     caggaaattt ggttgagaga aataggttgg gatgacgtcc tcccgagcga cctatctcaa      4440
     acatgggaga atttcctgca gagctttccg gccgttcagg cgatccacat acccaggtgg      4500
     ttacacgtct gcccggcagc caaggtgcag attcatggat tctgcgatgc gtcccagcgc      4560
     gcctatgggg cagcgatcta catccgagta gagcagcccc agggtacatt ctgcaacctc      4620
     ctgaccgcta aaacccgcgt agcacccgtg aagacggtct ccctaccccg actcgagctg      4680
     tgcggggcgg tccttctggc agaactctcc tctgccatcc ttccacagat gccgttcgac      4740
     accagccagg tatcgttttg gaccgactcc accattgtgt tggcctggct gaacaggccg      4800
     gcgtgcgact ggaccacgtt tgtgggaaat cgagtcgcca aaatagcgcg gtgcagcccc      4860
     aacgtacgat ggagccatgt ccgatccgag gacaatccgg cagacctggc cagccgaggt      4920
     ctaggaccca aggacctcag cacaaacgac atgtggtggc acggccctgc ctggttgcga      4980
     tgtcctccat ccgagtggcc ttgtcctctg gccatatccc ctgagacgga cctggagaga      5040
     cgaaccatca aggtacacca cgccagcagc agcgccactg acatcctcag ccgcttctcc      5100
     gatctcgggc gcgctctacg cgtgcttgcc tacgtaaggc ggttcgctcg acgatgcaga      5160
     agggagtcga tccatcccga taagaatccc agcagggatg agctagctgc cgcactgcaa      5220
     gccgtcacca tcgtgacgca aaaaatccac tatgccaacg agcatcagtg cctcgctacg      5280
     aagcggcctc tcctggcctc gagttcccta cggtctctca atccgttcgt tgaccgaaac      5340
     ggtgccatcc gagcatgtgg ccgagtccaa gcctcggctt cgatgtcgta caacgagcgg      5400
     catccgatca ttctgccacc cgcatgcact ttggttcgct tgctagtccg gttcacgcac      5460
     cacatagccc tccatagtgg gaaccaggtg gtcgtccgcc ttctccgcgc tacgtattgg      5520
     atccctcgac tacgtcacgt agtgagggca gtgatccact cgtgcaaggt gtgcgtcatc      5580
     caacgcaaac gactccagac ccaactaatg ggcgaccttc cgtccacacg tgtaaccttt      5640
     tcccgaccgt tcacgtacac cggagtcgat ttcgccgggc ctttcgacgt caaaagtttc      5700
     actggacgcg cgtgccgatt aaccaagggt tatgtgtgcg tgttcgtgtg cttcaccacc      5760
     aaggcgatcc acttggaagc cacctccgac ctgtccaccg acaccttcct cgctgcgttt      5820
     gctcgttttg tcgcgaggcg aggctgcccc catgaagtcc actccgacaa tggcaggaac      5880
     tttgtaggtg cttccagagc cttggcccag gaccttctgg agacagtcaa ggctcggaca      5940
     tctgaagtgt acagccagca gggcctagcg tggcgattta tccctccggg agcgccacat      6000
     atgggtggcc tgtgggaggc aggcgtcaag agtttcaagg ctctgttcca aaggtcgatg      6060
     tgtacctaca aatacacatt ggaagagttt tcgacattcc tctccaagat tgaggcctgc      6120
     ctcaactcac gccccatctc ccctatgtct gaggatccaa cggacccact ggctctcagt      6180
     ccgggtcact tcctggtcgg cggcccgtta ctgtccgtag cggagccaga gatcagggag      6240
     agtgcctcct ctatcctcaa ccgctggcaa catctcaagg ctctgaacca acagttttgc      6300
     tcacgctgga agacagagta ccttcgagag ctgcataagc ggaacaagtg gcagcatcca      6360
     acgagagacc tcgaaattgg agacctcgtc gttatcaaag aagataacac accaccgcaa      6420
     gaatggcggc tgggtcgggt gcagaaaacc tatcccggcg ccgatgacaa ggtccgcgtg      6480
     atagacctcc tcacagcccg cggccttatc aaaaggccaa tcgcgaaggt ggtcctactt      6540
     cccatggact ccgcgattca ctcctgctac gccagtgtgt acgctggccc ttaagaagct      6600
     gtcttccgtc ccttaggctt aagtctttag ttccgtacag ttacagttac aactccagta      6660
     atccatttca ccatttccgc agcccaacaa ccactatggc accccgtcag tcgcgacgct      6720
     ctcgcagtca ggagcaagcc gaagaaggca gacgtacccg aggtaccacg tcctaccgct      6780
     gccgagtctg ccgaggcgtc catcctctgc ggaagtgcgg gcggttcctg cggctaagcg      6840
     ctgaaaagcg tttgcgggcg gcgctaatca acaaatactg cgccaactgc ctggcccacg      6900
     agcattctgg gcgcgattgt cgcagcgggg accgctgcaa gcactgccgt ggcaaccacc      6960
     acacgctgct ccatacgccg aactcggacc ggcgtcgccc cgctccagcc gcgccgtccg      7020
     cacgagcacc agctccatca acgccgtccg tacgagcacc agctccatca acgccgtccg      7080
     aacgagctcc acctccgaca acgtcgtccg cctgctccac ccgacctcca actctggcca      7140
     cactgctgca gcaccgcaac ccgccggtcc tcccgacggc caccgtcaaa atcgacaatg      7200
     gcgtcacggt ctacgagacc agggcgctga tcgacccctg ccggcccgtg tcggtaatca      7260
     acgcgtcgct ggccagggcg ttcaagctcc agacggtggc aatcgggaag gaagaagcct      7320
     gcaccgcagt gatccggtcg cccattacca gtgatttcaa gttggaggtc gtgctccaag      7380
     tggaccccaa gctgcacctg cgcactcctg cggcagccat cgatccagga ctccgaaagc      7440
     gagtcaggca cctcaccctg gcggacgaca ggttcgacca tcctgccatc gttgcgctca      7500
     tcctgggagc tgacgtctac ggggacgtcg tccgcgaggg gatgctcgcg agcacggaag      7560
     gactccccgt ggcgcagcac accgtattcg gatggaccct ttctggcgcc taccggacgt      7620
     gaagatggac cccccttgta tcgcgccaat ttggttgcat gatcctgcaa ggggggcggg      7680
     a                                                                      7681
//
ID   BEL-11_DAzt-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-208
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 779-779 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 208 BP; 68 A; 47 C; 45 G; 48 T; 0 other;
     tgtttaagcc tagaagtagg cagcgatccg gggcgacaaa cccaccactc cttggcaaca        60
     tcttgctaga gataagttag gtgctaagaa catttctgta aatatgcatg gcaattgaaa       120
     atatagtgcg aatcgaagta gacgcgacaa tacgtttttt ttgttgataa cgaagtccac       180
     gccaggaaaa ccaaccccct ccagaaca                                          208
//
ID   BEL-11_DBp-I repbase;    DNA;    INV; 5901 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5901
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 644-644 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           988..2385
FT                 /product="BEL-11_DBp-I_1p"
FT                 /note="DUF1759 and retropepsin."
FT                 /translation="MSLLNAFTLAEESPPATAISAAPTRARLPSLALPKFS
FT                 GNYSEFKNFMSLFETLVDKDVNIPVIEKFNHLISCLSGEALGTIKAFQVTE
FT                 SNYDKAIASLKRVYDNECLIFANQISKLFSLPKVSQPSASSLRGLIDTVSS
FT                 IYGSLLSIGDDTKIANSMIIHLVLSRVDPVTREKWEESLDYEELPLWSDFE
FT                 KILNRRYQHLSAEETGKPKQEKTGFGKQHNRSSLACSASNKQACSYCNAQD
FT                 HSLAQCSPFARLAVMQRFEFVKSASLCLNCLRKGHTVAKCKSTRCQICARS
FT                 HHKLLHRFTVTENNLALPPPNEHPPPALHLDGPSTSHALHASSLERVLLAT
FT                 SIVSVRTKNGEHILARALLDSGSQMNFITEELAQRLQIRREESCINLLGIG
FT                 QANSQVKKKIHTVVKSTINGSEFPFDFWILRTISGYHPDQSVNVKDWDLPK
FT                 NLPLADPYFLQTSADRHVNWS"
FT   CDS           2372..5869
FT                 /product="BEL-11_DBp-I_2p"
FT                 /note="reverse transcriptase, peptidase_A17 and
FT                 integrase."
FT                 /translation="MLIGAESFFELLSVGQIKQGPNHPILQKTLLGWIVSG
FT                 KYKANTSTPQQPVSSLNCQEELLESIDGNLKKFWSLEEVPTSKKLLSPEQE
FT                 LCEEHYQKNTVVLPSGRFEVRLPFKSDPSVLGNSFEVAKRRFLSLERRLSR
FT                 DPNLKKMYVEFMEEYESLGHMSPTSNDVLATPHYVIPHQCVLRPQSTSTKL
FT                 RVVFDASCKTSTHKCLNDLLMVGPTIQEELYSILLRFRLNRFALIADIKKM
FT                 YRQVMVNEADRRYQLIVWRKDPSESLKLCKLNTVTYGTAPAPFLAIRCLKR
FT                 LSESVKNTFPRAAEVIGSDFYVDDMLTGAGCIEELKTIKSEVTQVLQNAGF
FT                 ELSKWFSNSPEVTASESTVKPITLSDSELTKALGIAWVPKEDVFKFEIDAS
FT                 VMGQRATKRNILSVTSKLFDPLGLLSPILIKGKILLQELWLNKLDWDESIP
FT                 LHLETAWNKIQIALSQLEDISIPRFVFTEPMSPIQIHAFSDASMRAYGACV
FT                 YIRCESAEGIKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLCRKIKPLI
FT                 KVPIERSVFWSDSEVTLHWIRSHPSSLSTFVSNRVAEIQEWSDDSTWRHVP
FT                 TKQNPADIVSRGGDVKETVESIWFTGPSFLKEPEDKWPTSPRFDLSPELLQ
FT                 MEAKKNAVGLTAIVSTSDLLEVIEGYSSHLKLLRVFVYMFRFIRKSKKLVV
FT                 NSDIVPSPVEYNEAFKKIVEIVQEHEYQDEIEKIRKNLSVSPSLQKLNPFL
FT                 HESSEAGLTFSLLRVGGRLANAPISYDAKFPVLLTKRSQFVQSYVRYLHES
FT                 NFHVGPRALVSLLRQRIWIVNAQEVCSQTVRSCIRCFKCKPRLMTQIMGDL
FT                 PLDRIRALRPFSICGVDFCGPIDTTLKIRGRPPYKSYIALFVCFASKAVHL
FT                 EVVSDLSTDSFLLAFQRFVGRRGCPQIVHCDNATNFVGASRHFADLRRRIE
FT                 DEVDAVTQYASKNGCVFAFIPPRAPHMGGLWEAGVKSAKHLLLRAVGNARL
FT                 TAEELQTVLVGVEAVLNSRPLGALSQDPSDGEALTPGHLLTGGPLIAPPAP
FT                 RTPDQQGLTCLRRWRLVSSIKQMFWQRWSREYVLGLQARSKWQNKEDDIRT
FT                 GELVLIAEDHQPPQQWLTGRVGATHAGADGRVRVAVVRTSSGAEYRRAVHK
FT                 LARLPVG"
XX
SQ   Sequence 5901 BP; 1671 A; 1295 C; 1367 G; 1567 T; 1 other;
     ttttggcgcc cccgggtgga ctgcagtgcg aaatatctaa aaaataaaca taagtaaaag        60
     tgacagtgac actgtgttat tacacacaaa ctaaaattca aagagctgct cgcgacgcgt       120
     ccgtgaagtg caaaataaaa aacaaaattc accgcgtcgt gaaaccgcct caagmcgaat       180
     ccaggatcat caccgcagga tcatcgccac caggaaacca tctacctcca tgccgtgcac       240
     ctgcattgac tgcacaagga aagtggcagc gggattaaag gatcccaagg cagaaccgca       300
     ggtatttgtg caaaaaattg aaagttgaga aaagacaaat taaatcttcg tcttgtgctg       360
     gaatattgca ccctcctttc aattcttggc gcatacgtac ttgaaattag tagagctaaa       420
     aatttgatag tttagttaaa ataattaaca aactgccaaa ataatttgga tacaattata       480
     tgcagtgtaa aatttttttt cgctccaacc gttgtccgct gctatatatg taagtatgta       540
     tatgcattag tttggcgcat tttattttac cggaacgcca agtgacgcgc taccctataa       600
     ttgttgggta tacacctttt tcggtgtcat tggcaaccaa ctattttttt ggatactcag       660
     tgcctcgact atcaacatta ttcgactatc aattaattat taattatttc atctttttcg       720
     ccatattaat taattatttt ttcgttttcg ccagatatta aattaaatat ctttttcgtt       780
     tgttttcgtt tttgaattta atttattaat taaataatta gtaagtcagt tcctttagtg       840
     aagaccgagc tagagtgcag gcttcaggtt ttaaatgaga caatatttaa ggcaaatgag       900
     ttgcaagacc agatcgagca attagatgag gaagatgaat ttggagccga gttggaagaa       960
     ttagagataa caactaaggc aagggtgatg tcattattaa atgccttcac gttagctgaa      1020
     gagtccccac cagctactgc aatttctgca gccccaactc gagctcgact tcccagtttg      1080
     gcattgccaa aattcagtgg aaactattcg gagtttaaaa atttcatgag tctctttgag      1140
     acattagtag acaaggatgt gaacattcct gttatcgaga aatttaacca tttaatttct      1200
     tgcctctctg gtgaagcctt aggaactatc aaggcattcc aagtcaccga gagtaattat      1260
     gacaaagcta ttgctagtct gaaaagagtt tacgataacg aatgtctcat ctttgcgaac      1320
     caaataagca aattattcag ccttccgaaa gtttcccagc cgtctgcgtc gtcgttgaga      1380
     ggtctcatcg acacagtgtc atcgatctat gggtcactat tatccatagg agatgacact      1440
     aaaattgcaa actcaatgat cattcactta gttttgagta gagtagatcc agtgaccaga      1500
     gaaaaatggg aagagtcact ggattatgag gaattgccgc tgtggtccga tttcgaaaaa      1560
     atattaaatc gtaggtacca gcacctgtcc gctgaagaga ctggcaagcc aaaacaggag      1620
     aaaactgggt tcgggaagca gcacaatagg agttcgttgg cttgctccgc ttccaataaa      1680
     caagcttgca gttattgcaa cgcacaagac catagtcttg cccagtgtag tccgttcgct      1740
     cgccttgctg taatgcaacg gtttgagttt gtcaagtcag cctcattatg tttaaattgt      1800
     ctgcgaaaag gtcacacggt tgcgaagtgt aaatcgacta ggtgtcaaat ttgtgcaaga      1860
     tcgcaccaca aacttctgca ccgatttact gtgaccgaaa ataacttggc gttaccacca      1920
     ccaaatgaac atcctcctcc agcgctacat cttgatggcc cttctacgtc acatgctttg      1980
     catgcgtcat ctctagaaag ggttttgtta gcgacgtcga tcgtaagcgt tagaactaaa      2040
     aatggcgagc acatattggc ccgagcatta cttgactctg ggtcacaaat gaacttcatt      2100
     actgaagaac ttgctcaacg cttacagatc cgtagggagg aatcgtgtat caacttgctt      2160
     ggaattggtc aagctaattc ccaggttaag aaaaagatac acactgtggt gaagtcaaca      2220
     attaatggta gtgagtttcc gttcgacttt tggattttga gaactatctc gggttatcac      2280
     cctgaccagt cagtgaacgt gaaagattgg gacctaccaa agaacttgcc gttagcagac      2340
     ccatattttc tacaaacctc agcggataga catgttaatt ggagctgagt catttttcga      2400
     actgttgtcc gttggccaaa taaaacaagg gccaaaccat cccatcctcc aaaaaactct      2460
     ccttggatgg atagtatcgg gaaaatataa ggcaaatacc tcaactcctc aacagcctgt      2520
     ctctagcctg aattgccaag aagaattact cgagtcgata gatggcaatt tgaaaaaatt      2580
     ctggtcgttg gaagaagtac caacttccaa aaagcttttg tcacctgaac aagagttatg      2640
     tgaggaacat tatcagaaaa atacagttgt actgccttca ggtcgatttg aagtcaggct      2700
     tccatttaaa tcggatccaa gcgttttggg aaactcgttc gaggtagcca aacgccgttt      2760
     tttgtcgctc gagagaagat tatctcgaga tccgaattta aagaaaatgt atgtggaatt      2820
     tatggaagaa tacgaatcct taggtcatat gtcccctaca agcaatgatg ttcttgctac      2880
     tccacactac gtcatacccc atcagtgtgt cttacggcct caaagcacat cgaccaaatt      2940
     acgagtcgtg tttgatgcgt cttgtaagac atcaacacat aagtgcctta acgatctgtt      3000
     gatggttggt cctaccatcc aggaagagtt gtattcaatt cttcttaggt tccggctgaa      3060
     cagattcgct ctgatagccg acataaaaaa gatgtatcgc caagtaatgg taaatgaagc      3120
     cgataggcga taccagttga tagtgtggag gaaagaccca tcagagtcct tgaaactgtg      3180
     caagctcaac accgttacat atggcactgc gccagcccca ttcctggcca taaggtgttt      3240
     gaagaggttg agtgaatctg tgaaaaatac attccctcga gctgccgaag ttattgggtc      3300
     cgacttttac gtcgacgaca tgttaacggg tgctggttgc attgaggagc taaagacaat      3360
     taagtctgaa gtaactcagg ttcttcaaaa cgctgggttt gaattgagca agtggttttc      3420
     aaactcgcct gaagttactg catccgagag cacggttaag ccaataacac tttcggactc      3480
     agaactgact aaagcattag gaatcgcttg ggttcctaaa gaagatgtat ttaaatttga      3540
     aattgatgct tcagtcatgg gtcaaagggc gaccaagcgg aacatccttt cggtgacatc      3600
     gaagttgttt gacccccttg gcctattaag ccctatactt ataaaaggaa agatcctatt      3660
     gcaggaactt tggctaaata agctagattg ggatgagtca attccactgc acttagaaac      3720
     agcgtggaac aaaatacaaa ttgccttgtc gcaattagag gacatctcaa ttccgagatt      3780
     cgtgtttacc gagccgatgt caccgattca aattcatgcc ttttctgacg catcgatgag      3840
     agcctatgga gcctgcgtct atattcgttg cgaatctgca gaaggtatta aagtttcatt      3900
     gttgacggca aagtccaaag tagcgccgct caagacaaag acgctccccc gtcttgagtt      3960
     atgtgccgct caccttctcg cagatctctg ccgcaagata aagcctctaa taaaagttcc      4020
     gatcgaacga agtgtatttt ggtcggattc agaagtaact cttcattgga ttcgttccca      4080
     tccatcgtcg ttgtcaacgt tcgtatcgaa tagagtagct gaaattcaag agtggtcaga      4140
     tgatagcacg tggcggcatg taccaactaa acagaacccg gcagatatag tgtccagagg      4200
     tggagacgta aaggagactg tagaatcgat ctggtttaca ggtccatcgt ttttaaagga      4260
     accggaagat aagtggccga cgagcccccg gtttgatctg tcaccagaac ttctacagat      4320
     ggaagcgaaa aagaatgcgg tcggattaac cgcaatcgta tctacctcag atttattgga      4380
     agtgatagaa ggttattcct ctcacctaaa actgctgcga gtgttcgttt atatgttccg      4440
     ctttataagg aaatcgaaga aattagtagt gaattctgat attgttccct cacctgtcga      4500
     atataatgaa gcctttaaga aaatagtcga aatagtccaa gagcacgagt atcaagatga      4560
     aatagaaaag atccggaaaa atttaagtgt tagccctagt ctacaaaagc taaatccctt      4620
     tctacacgaa tcatcagagg ctgggcttac cttttcgttg ttgcgggttg gggggcgact      4680
     agctaatgct cctatatcgt acgatgccaa gtttccagta ttgttgacaa aacgctctca      4740
     atttgttcag agctacgtcc gatacttgca cgagtcgaat tttcatgtgg gtccacgagc      4800
     acttgtgagt cttttgcgac agcgcatatg gatcgtaaat gcgcaggaag tctgcagtca      4860
     gacagtacgg tcatgcatac gctgctttaa atgcaagcct cgtctgatga ctcaaatcat      4920
     gggtgattta cccttagata gaattcgtgc tctccgccca ttctccatat gtggtgttga      4980
     tttttgtggc cctattgata cgacattgaa aattcgtggt aggccaccct ataagtccta      5040
     cattgcctta tttgtttgtt ttgcgtccaa ggcagttcat ttagaagtag tttccgacct      5100
     ttcaactgat tcctttttgt tggcttttca aaggttcgtt gggcgccgag gatgtccgca      5160
     gatcgtgcac tgcgacaacg cgacgaactt cgtcggagcg agtcgccact tcgcagacct      5220
     tcgtcggaga atcgaggacg aggtcgacgc ggtcacgcaa tacgcatcaa aaaacggatg      5280
     cgtatttgcg ttcataccgc cgcgggctcc gcacatgggc ggactatggg aggcaggtgt      5340
     gaagtctgca aaacacctac tcctacgagc ggtagggaac gccaggctga ccgcggagga      5400
     gctgcagacc gtcctcgttg gagtcgaggc cgtcctgaac tcacgacccc tgggggctct      5460
     gagtcaggac ccaagcgacg gcgaggcgct tactcccggg cacctgttga caggcgggcc      5520
     gctcatcgcc ccaccagcac cgcggacccc ggaccagcag ggtctaacgt gcttgcggcg      5580
     atggcggctt gtctcgtcaa tcaagcaaat gttttggcag cgatggtccc gggagtacgt      5640
     cttgggccta caggcgcggt cgaagtggca gaacaaggag gacgacatcc ggacgggcga      5700
     gctggtcctg atcgcagagg atcaccagcc gccacaacag tggctcacgg gacgagtagg      5760
     agcaacacac gccggcgcgg acggaagggt cagggtcgcc gtcgtccgaa ctagctctgg      5820
     agcggaatac aggagagcgg tccacaagct ggcgcggctg ccagttggtt gaagcctgat      5880
     ggaggccttc aacggggccg g                                                5901
//
ID   BEL-11_DBp-LTR repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-334
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 645-645 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 334 BP; 93 A; 46 C; 64 G; 131 T; 0 other;
     tgttaattga tttgttattt attgaagttg tcgaaaattt gaattatagt ttatagctga        60
     attgtatttg ttagttgtta gtctgtaaat ttactctaag atagcttagg gcggagcggg       120
     agcgaaagct catattcgct cttgtgcgaa ttcgccccgc ttcgccgcaa tagataagtt       180
     aggcttaaga ttagagaaaa atacattcga aattataacg ttgatgaggc acgaccattt       240
     ttttcgtttc gttttttcgc atttttttaa atattaagca gccacctttt ttttgttttt       300
     ttataagtgt gagataaact aatctcgtta aaca                                   334
//
ID   BEL-11_DEl-I repbase;    DNA;    INV; 7860 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   24-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DEl-I;
KW   BEL-11_DEl-LTR.
XX
NM   BEL-11_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7860
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 441-441 (2012).
XX
RN   [2]
RP   1-7860
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           851..7858
FT                 /product="BEL-11_DEl-I_1p"
FT                 /translation="MLSETIIKLLEAQASLTKEIRVIEAGQLTSESISKLD
FT                 SLKARFVANHGSLLKCGVVDHDYFNKKWFEEICKVIETLKSKFSNLKVGSE
FT                 TKTVNAAGSDPNKLAEVFDQNVEQLNKYLKESIKELNRASREDCLLRANKI
FT                 EFLWNRTSNKIKEFLKRYENNISFDETVEELEFDVKNVLEILDERIKSSDV
FT                 TIGSNNGVLVRDRVDDLPLLPKIQVPTFSGEGKEWDLFSELFKEIIHNRDD
FT                 LSSSLKFNYLKTALKGEARSMVAHLLTGSAENYTAAWELLTKRYENKRKIF
FT                 SDQLNRLIELPILDNDSAKQIKWFIDSINESIHLIRTKANLNEDVDVIFAH
FT                 IIIRKFNREALQLYETHIKKTKEIQLLSDVMEFLEQRVSSLSSALNDEKKV
FT                 FKKVVNTTVKESCLLCKMVGHFVTNCYKFRGMSPIERGEFIRKQRLCNRCF
FT                 KHSVFKKCNSEYLCSICKKPHHTMLHVSTEKREKVNTCVTKEQAFLATALI
FT                 KVKSNKGGYENLRALIDSGSQCTIISEEAAQILNLSRKQTITEVSGVSCSD
FT                 TCTSKHKVNLTIKMRDDTKNPLNIEAIILPKLMKALPIKTLDVDKSKWTKY
FT                 TLADPHFNKPSRVDIIIGVDLYPYIVKDGVVKIDGLLGQNTEFGWIISGCT
FT                 KSKGTELIVATTIEVGDLERFWEMENDYNDIEEEICERHFLETTKIDKNGR
FT                 YVVKIPFKNEKELGDSKAQAIARFYNLERKLNKNIKLKESYIKFMHEYIDL
FT                 GHMIETKKEGKYYLPHQGVVRESSLTTKLRVVFDASAKTTNNKSLNDIMWV
FT                 GPRVQKDIFDIIVKWRKWPFVLSADIEKMYRQINMDEEDQDYLHIIWRDSP
FT                 NKKLKNYKLTTVTYGTASAPYLATRVLAEISNKCENMSIKDIIKNDFYMDD
FT                 LMTGANSIQEAKXHVEYITIELEKVGFNLRKWISNVSEIVEALESKEENKI
FT                 LEIQENESIKTLGLQWEPVKDEFKFNFNSEPCTKINKRVVLSTLAKIYDPL
FT                 GWLSPVTIIGKLFMQQLWLTEQKWDQNLSDSDANKWKSFKENLTFLESIRI
FT                 PRWVKSXDKMPVQIHGFSDASDKAYAAVVYAKVGTSSMIIASKSKVNPKKN
FT                 RKTIPKLELCAAHLLSKLIDRVRTAIGSQTKAYGWSDSTITLAWIKNGNNK
FT                 DKFIRRRTDEIRKIKEIEWRHVRSEENPADVASRGVTPEKLLECKIWWNGP
FT                 QWLAKSEKYWPIEDEADSIIVSTTLIEKPRHFILSLIERYSCMRKLERVIA
FT                 YILRFIDMKLKNKSFPAYLTVNEIKLARVFIIKTQQEIQFSSEIICLKLRK
FT                 DIEIKSKILGLNPFLDKDGLLRVGGRLQNSSAEFHTKHPIILDKCHLTSLI
FT                 IKDSHRETLHGGINLMRNYIQRKFWIFGLRNSLKQYLGQCVKCARYRQITA
FT                 EQIMGNLPKHRVTMAHPFLNTGVDYAGPYQIRCSKNRGQKSYKGYIAVFVC
FT                 MATKAIHLEVVSDLTSDAFLAALRRFFSRRGKCAKIFSDNGTNFVGASRKL
FT                 NEDLQKVLNENTKIIPVLENEQIEWHFIPPSGPHFGGIWEAGVKSVKYHLK
FT                 RIIGDNNLTYEEMATLLCQIEAVLNSRPLYTANTDIDDLEVLTPGHFLIGR
FT                 PTIGPIETISEEKLGNLDRWKLIQKMKREFWNKWKNDYLNTLQQRNKWKIG
FT                 LQNINKGQIVLLKDENCHPARWPLGRVEEVHKGKDDRVRIVKVKLQDGSIL
FT                 RPITKVCPLTGIQAEESESPSLLKQTRGTRNSPRIHKLGVMAIMLFLLLVC
FT                 QVSNASLPAQGQQKWSIEKFKNTTSIYLDPMGNVEVIASSWDLIVYYNMDP
FT                 YFDMIKRGKILNEKMRVVCGKLHGFEDQCYTVLDNTQRQITDLEENNKLFM
FT                 TQDRKRLKRAPFEFMGSLYHILFGVMDAEDRENLESNMKNLLENQENTSDL
FT                 VKKQTSVVESTLNILKRTTDEVNSNFRSMNTRIENITQVLKESYYVYKESI
FT                 NFFMVTKQLGSLIEECEKIQAGVINLLIDINHGRLNPNILKPMQLKSEIAR
FT                 IKDALLETLVLPGKRTGTEIKEIYTLLTAKGIFVDNKLILNVKIPLFGRHP
FT                 SHLFRVIPMPVKTENDLIIADLNSKYLVYNFEIDSYHLMTEATLNKCQKWK
FT                 TNNVICEGNWPWSSVSDNTCEITPFKPNSHSKCVYKKMTQESSYWVELQKK
FT                 GSWIFKVSEPTKARIQCNNFPQELIDLPEQGILTIVSGCTIRTDDKILIAH
FT                 HSIKSENYEPIAISYVNNISKIPSIVWNPLTLPAINYNEEINKLKDELKEI
FT                 KENHYEIKGLNFHHISGHAALIIGLIIMAVLILYIIRRSNVSRRMQAIVLP
FT                 GPWQ"
XX
SQ   Sequence 7860 BP; 3070 A; 1196 C; 1482 G; 2106 T; 6 other;
     ttttggtcct tcgaggcact ctgtagtttt cccccaccag tggtaagaga ctcagagttt        60
     ttaaaccagc accttaaagt ctgatttgtt gcgagcgcac gatcagctaa aggtaacatt       120
     ttggtccttc gaggcactct gtagttttcc cccaccagtg gtaagagact cagagttttt       180
     aaaccagcac cttaaagtct gatttgttgc gagcgcacga tcagctaaag gttgcaaaaa       240
     taaataaaaa taaataaaat aaaaatataa aaattcacaa gtttaaatct tgttaaaaaa       300
     ctaaaagtta ataagccaaa cgggcacaaa attctgaaaa attacacggg tgtgttmcgc       360
     gacgtgggcg ttaccaaggc cagaacattg gtaaattgtt aaaaaaaaaa ataaaaaggt       420
     gttcggttat acgggaacag aaaaggacga actcaatagc tcgaacctta agtggttaga       480
     acaaaaataa ataaattaaa caaccaacaa caacccagtc aaaccaagac atcgaagcaa       540
     cagccaaatt tcgccaacca acawcaagta acaaccaaat aaaccacatc gcaccaacaa       600
     cccagtctca gcaaccaaga catcgaagca acagccaaat ttcgccaacc aacgacaagt       660
     aacaaccaaa aaggacatcg aagcagcaac aaggacatcg aagcggcaac aacccagtca       720
     aaacaacgac atcgaagcaa cagtcatcga agcagcagat aagttaactt ttaaaatatt       780
     ttttgtaaca gaacaaataa gaagtagatt ataagtattt aaagtcctaa ataccaaatt       840
     aaaaaaaaaa atgttgtccg aaaccattat aaagctgctt gaagcacagg caagcttaac       900
     taaagaaatt agagtaattg aagcaggtca attaacaagc gaaagtattt caaaattaga       960
     tagcctcaaa gctagatttg ttgcgaatca tggatcctta ttaaaatgtg gagtagtcga      1020
     tcatgactat ttcaacaaaa aatggtttga agagatttgt aaagttattg aaaccctaaa      1080
     aagtaaattt tcaaatttaa aagttggttc tgaaaccaaa acagtaaatg cagcagggag      1140
     tgacccaaac aaattggcag aggtgttcga ccaaaatgtc gaacaactaa acaagtattt      1200
     aaaggaatcc attaaggagc tcaatagggc tagccgtgaa gactgcctac taagagctaa      1260
     taaaatagaa tttttatgga atagaacaag caataaaata aaggagttct taaaaagata      1320
     tgaaaacaac atatctttcg acgaaacagt cgaagaacta gaatttgacg ttaaaaacgt      1380
     gttagaaatc ctagacgaaa ggataaaatc ttccgatgtg acaataggaa gtaataatgg      1440
     ggtgttggta agggatagag ttgatgacct tcccctatta ccaaaaatac aagttcccac      1500
     cttttctgga gaaggaaaag agtgggacct attttctgaa ttatttaaag aaataattca      1560
     taatagagat gatctgagct catctctaaa atttaattat ttgaaaaccg ctcttaaagg      1620
     cgaagcaagg agtatggttg ctcacttgct aacaggttct gctgaaaatt atactgccgc      1680
     ttgggaacta ttaaccaagc ggtatgaaaa taagagaaaa atattctcag atcagctgaa      1740
     tcgtttgatc gagttgccca ttctagacaa cgattcagca aaacagatta aatggtttat      1800
     tgattcaata aatgaatcaa ttcatttaat cagaacaaaa gcgaatttaa atgaggatgt      1860
     tgatgtgatt ttcgcacaca ttatcatccg aaaattcaac agagaggcgc ttcaattata      1920
     cgaaacgcat ataaaaaaaa ccaaggaaat tcaattacta agcgatgtaa tggaattttt      1980
     agagcaacgt gtgagttctc ttagctcagc actaaatgat gaaaagaaag tttttaaaaa      2040
     agtggtaaat accactgtta aggaaagttg tctactttgt aaaatggttg gacactttgt      2100
     aacaaattgt tataagttta ggggaatgag tccgatagaa agaggggagt ttattagaaa      2160
     acagcgcttg tgcaacagat gttttaagca ttctgttttc aagaagtgta actcggaata      2220
     tttatgctca atttgcaaaa aaccacatca caccatgctc catgtttcaa ctgaaaaaag      2280
     agaaaaagta aacacctgtg ttactaagga acaagcattt ctagctaccg cattgattaa      2340
     agtaaaatca aataaaggtg gctatgaaaa cctaagggca ttaattgata gtggatcgca      2400
     atgcaccatt atttcagaag aagctgcaca aatattaaat ttatctcgta aacaaactat      2460
     caccgaggtt agtggagtgt cctgttcaga cacttgtact tcaaagcaca aagttaattt      2520
     aactataaaa atgcgcgacg atacaaaaaa ccccctgaat attgaagcta tcattcttcc      2580
     gaaactaatg aaggctttac cgatcaaaac tttagatgtt gacaagtcaa agtggacaaa      2640
     atatacgttg gcggaccctc actttaataa accaagtagg gtagatatta ttataggagt      2700
     ggatttatat ccatatattg taaaagatgg agtagttaaa atagacggac tactagggca      2760
     gaatactgaa ttcggatgga ttatatccgg ttgtacmaaa tctaaaggta cagaattaat      2820
     tgtggctact actatagaag taggagattt agagaggttt tgggaaatgg aaaatgatta      2880
     taatgacatt gaggaagaaa tttgtgaaag acatttctta gagaccacta aaatagataa      2940
     aaatgggaga tatgtggtca aaattccatt taaaaatgaa aaagaattag gagactccaa      3000
     agcgcaagca atagcgcgat tttataattt agaaagaaaa ctaaataaaa atattaaact      3060
     taaagaaagt tatataaaat tcatgcatga atatattgac ttgggacata tgatagagac      3120
     caagaaagaa ggaaaatatt atttacccca tcaaggtgtt gtaagggaat ctagccttac      3180
     aacaaaatta agggtagttt tcgatgcctc agcgaaaact acaaacaaca aaagtctaaa      3240
     tgacattatg tgggttggac caagagtcca aaaagatatc tttgatatca tcgtcaaatg      3300
     gcgtaaatgg ccatttgtat tatcggcgga cattgaaaaa atgtaccggc aaataaatat      3360
     ggatgaagaa gatcaagatt atttgcacat tatttggaga gactctccaa ataaaaaact      3420
     aaaaaattac aaactaacaa cggttactta cggtacagca tcagcaccct atttagctac      3480
     aagagtgctt gctgaaattt caaataaatg cgaaaatatg tcaataaagg atataattaa      3540
     aaatgatttt tatatggatg accttatgac aggtgctaat tccatacagg aagccaaaca      3600
     mcacgtggaa tatataacca ttgaattaga aaaagtaggc tttaatctaa gaaaatggat      3660
     ttccaatgtc tcagaaatag ttgaggctct ggaaagcaaa gaagaaaata aaatattaga      3720
     gattcaagaa aatgaatcca taaaaacact gggtcttcaa tgggaacctg ttaaagatga      3780
     atttaaattc aattttaaca gtgagccctg tactaaaatt aataagcgag tagtgttatc      3840
     aacacttgca aaaatttatg accccttagg ctggttatct ccagtgacaa taattggaaa      3900
     attatttatg caacagcttt ggttaacaga gcaaaaatgg gatcagaact tgtcagattc      3960
     agatgccaat aaatggaaaa gctttaaaga aaatttaaca tttcttgaaa gtataagaat      4020
     tccaaggtgg gtgaaatccm aagataaaat gccagttcaa attcatggat tttctgatgc      4080
     gtccgataaa gcatacgcag ctgtagtata tgctaaggtg ggaacctctt cgatgattat      4140
     agctagcaaa agcaaagtta atccgaagaa aaatcgaaaa accattccta aactagaact      4200
     ttgtgctgca catctcctct cgaaattaat agatagagtt aggacagcaa ttggaagtca      4260
     aacgaaggca tatggttgga gtgattcaac aatcacactt gcatggatta aaaatgggaa      4320
     taataaagac aaatttattc gacgacgaac tgacgaaata aggaaaatta aggagatcga      4380
     gtggagacat gttcgatcag aagaaaaccc agcagacgta gcatcaaggg gtgtaacacc      4440
     ggaaaaatta ttagaatgta aaatttggtg gaacggacca caatggttag ccaagtcgga      4500
     aaaatactgg ccaatagaag atgaagcaga tagtattatt gtcagtacta ccttaataga      4560
     gaaaccaaga cactttatac tatcactaat agaaaggtac tcctgtatgc gtaaactgga      4620
     aagggttatt gcatatattc taagatttat tgatatgaaa ttaaaaaata aatcatttcc      4680
     agcatatctg acagtaaatg aaataaagtt agcaagggta tttataataa aaacacaaca      4740
     agaaattcag tttagttcgg agataatttg cttaaaactt agaaaagata ttgaaattaa      4800
     aagcaaaata ttaggattga atccattttt ggataaagac ggactattaa gagtaggagg      4860
     tagattacag aactccagcg ccgaatttca tacaaaacat ccgataattc tagataagtg      4920
     tcatttaact tcattaatta tcaaagattc acatagagaa acattacacg gcggaattaa      4980
     tttgatgcga aattatattc aaagaaaatt ttggatattc ggattaagga acagcttaaa      5040
     gcaatactta gggcagtgtg tcaaatgtgc aagatataga caaattacgg cagaacaaat      5100
     tatgggaaat ttaccaaagc atagagttac tatggcccac ccgtttttaa atactggggt      5160
     agactatgct ggcccatatc agataagatg ctcaaagaat cgaggccaaa aatcctataa      5220
     aggttatatt gctgtgtttg tttgcatggc aacgaaggct atccatttag aagttgttag      5280
     tgatttgact tcagatgcct ttttagctgc gctgaggaga ttcttttcca gaagaggaaa      5340
     atgtgcaaaa atattttctg ataatggaac aaattttgta ggtgcctcta ggaaattgaa      5400
     tgaagattta cagaaagtac ttaatgaaaa tactaaaatt attcccgtgt tagagaacga      5460
     acaaattgaa tggcatttta tacccccgtc aggacctcat tttggaggta tatgggaggc      5520
     cggagtgaaa tcggtaaaat atcaccttaa aagaataata ggggataata atctaactta      5580
     tgaagagatg gccactctct tatgccaaat tgaagctgta ttaaattcta gaccccttta      5640
     tacagccaat actgacattg acgatttaga agttttaaca ccaggtcatt ttctgatagg      5700
     aaggcccact ataggaccta ttgaaaccat ttccgaagaa aaacttggaa atttggatag      5760
     atggaagttg atccaaaaaa tgaaacggga attttggaat aaatggaaga atgactattt      5820
     aaacacwctt caacagagaa ataaatggaa aataggattg caaaatatta acaaaggtca      5880
     aattgtatta ttaaaagatg aaaattgtca ccctgctaga tggcccttgg gaagagtaga      5940
     agaggtacat aaaggaaaag acgatcgagt cagaatagtg aaagtaaaac ttcaagacgg      6000
     ttcaatttta agaccgatta caaaagtttg ccctttaact ggaattcagg ccgaagaaag      6060
     tgaatcacct agtcttttga aacagacaag ggggactcga aatagcccta gaatccataa      6120
     acttggagta atggcaataa tgttattcct attgttagtt tgccaagtgt ctaatgcaag      6180
     tttacctgca caagggcaac aaaaatggtc aattgaaaaa ttcaaaaaca ctacgtcaat      6240
     ttatttagat ccaatgggga acgtcgaagt catagcatca tcttgggatc taattgtgta      6300
     ttataacatg gatccgtatt ttgatatgat aaaaagggga aagattttga atgaaaaaat      6360
     gagagtggtg tgtggtaaac ttcatggatt tgaagatcaa tgttatactg tccttgataa      6420
     cactcaacga caaattacag atttggaaga aaataataaa ctttttatga cccaagatag      6480
     gaagagatta aagcgagctc catttgagtt tatgggctct ctgtatcaca tactgtttgg      6540
     tgtaatggac gctgaagata gggaaaacct agagagcaac atgaaaaacc tcttagagaa      6600
     tcaagaaaat acgtcagatt tagtaaaaaa gcaaacttct gttgttgagt cgacattaaa      6660
     tatccttaaa agaacaacgg atgaagtcaa ctcaaatttt agaagcatga atacgagaat      6720
     agaaaatata acacaggttt tgaaagaaag ttattatgtt tataaagagt caattaattt      6780
     ctttatggta actaagcagt taggttcttt aattgaggaa tgcgaaaaga ttcaagcagg      6840
     agtaattaac ctacttatag atattaacca tggtagatta aatccaaata tattgaagcc      6900
     tatgcaactg aaatccgaaa tagctcggat aaaggatgca ttactagaaa cattagtact      6960
     accaggtaaa agaactggaa cggaaataaa ggaaatttac acgttattaa cggctaaagg      7020
     aatttttgta gataataaat taattttaaa tgtaaaaatc cctttatttg gtcgacaccc      7080
     ttcccatttg tttagggtaa ttccaatgcc agtaaaaacc gagaatgatc taattattgc      7140
     agatttaaat tcaaaatatt tagtttacaa ttttgaaatt gattcctatc acttaatgac      7200
     agaagctact ttaaataagt gtcaaaaatg gaaaactaat aatgttatat gtgaaggtaa      7260
     ctggccttgg agtagcgtaa gtgacaatac gtgcgagata actcccttta aaccaaatag      7320
     tcattctaaa tgtgtttata aaaaaatgac tcaggaaagt tcttactggg ttgagttaca      7380
     aaagaaaggt agttggatat tcaaggtttc agaaccaaca aaggctagga tacaatgtaa      7440
     taattttcca caagagttaa ttgatctgcc ggagcaagga attctaacta tagtatctgg      7500
     ctgcactata agaactgatg acaaaatatt aatagctcat catagtatta agtcagaaaa      7560
     ttatgagcct atagcaattt cttatgtaaa taacataagt aagattccaa gtattgtttg      7620
     gaatccgtta acattaccgg ccatcaatta taatgaggaa ataaacaaat taaaggacga      7680
     attaaaagaa ataaaagaaa atcattacga aataaaagga ctgaattttc atcatatttc      7740
     aggccacgct gccttaatca taggactaat aattatggca gttttaatcc tatatataat      7800
     aagaagaagt aatgtatcaa ggcgcatgca agcaatagtt cttcctggcc cttggcagaa      7860
//
ID   BEL-11_DEl-LTR repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.06, Created)
DT   24-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DEl-LTR;
KW   BEL-11_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-571
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3107-3107 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 571 BP; 187 A; 110 C; 112 G; 162 T; 0 other;
     tgttcaaaca tgaacacgtc taaatataag tatgaacata taagctgaac ggagcagcca        60
     cttgacctcc tgtgagcggt cacagaatgt tttagttaca agtgctatca gggtagttgt       120
     gatctccctt atcgcacttt agaatgtttt cacagtttag ggataaacaa gtcactccgt       180
     gggttattag aaataagata atgacttcaa atataagatt ttatgagttc tgtgcatgtc       240
     acttgtcaat ggagccagag ccataaatta cgatctgtta cttaaaatcc aagggaacat       300
     ttgtttgcac ttgtaatctg tacgtgcagg ccacttgagc ctctaaatat tatcacttga       360
     aatgtttccc acactacaca aaggacttgg gcgggggtca aaatatagct ctcccgctca       420
     gggcaaaaca gatgcggtct ctgcgtaggc catagataag aatagaatac gaaacacacc       480
     aatgttactt gctaagaaac gtattgaaat aaaaacagtt tgaaatgata actcaacaaa       540
     tgtagacgtc tttcattaga tcgctcttac a                                      571
//
ID   BEL-11_DSer-I repbase;    DNA;    INV; 5889 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5889
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1977-1977 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..5733
FT                 /product="BEL-11_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MKSDSEAPTLEQLANLQANRYQSLKSVLQNFKKDSPS
FT                 RKTRIYLKKRLEQVEEIRNAFRETDSVIVNLEGFAGSSYAGKSFLSEFEER
FT                 YMDAYCAIAEDLDKLGSEIPAPPPPTGGGADPEVRLNMPQMAVPKFSGECV
FT                 SWPGYYDAFMSLIHNNNNLSNVQRLHFLKESLPPGRDNDIRQMQLMESNYA
FT                 VAWGMMIKRYNNPRLVFSHHMNAIYALPRLQRDSTELIRSMLSTVNVCLAA
FT                 FRRVQALDGESQHWLAHYVASKLPKETHNAWEHHQGSGAAVPTYKELESFL
FT                 NDRLIIMDAIENRSSSYDSNIGPGSTDPSKRVRVHNAQERLGRANSACYHC
FT                 GGDHILRRCTAFLALDCYQRKDIVSRAKLCINCLSKSHALPRCTSNKSCQV
FT                 CGQRHHTLLHFPVMAQPARPSTPHLSAPTATENISQQSRRSSSSQNPSASY
FT                 RCHSATSPNVSSRSVLLATARITVRNPVNGLQAIINALIDQGSEATIVSEH
FT                 VVQSLHLTRASTRASIFGVGPGVGRRCKYKVNFEIGSIINPTFSLEVDSAY
FT                 VLPSVTSCLPSLSFTPQRWDHIRGLSLADPHYSRSKRVDLILGVDMLAQIM
FT                 LPDTRIGLPGEPLAQNTHFGWILSGRAEGVRESTQLRCHRVLLDTEAWLKR
FT                 FCEVESVPERPSLSEGDLWCEAFFQKTYVRRGDGRYIVRLPFKTYRDPAMV
FT                 LGRSQQMALNRFLQLERRLSSSPDRWSKYVDEIEEYFALEQIAPAVGSESS
FT                 SVKNTSTNMHVTSCVLPHHAVFKKEPQSAKQRIVFDASSRTSNGRSLNDIL
FT                 WTGPTLQNDMSAVILNWRKYRFVFTADIQKMYRCIDVHPEDAQYQRILWRA
FT                 ADGSIHVYALSTLTFGTASAPFTAIRVIQQLAKDERRSFPKAEEVLMHEIY
FT                 VDDILSGGHSIEETEDKRTQVAGAIKSARMELRKWSSNEASILLSIPLEHQ
FT                 CSQTPLNWDTTDPIKALGMYWLPNKDCFKFRINFEIPDSLTKRMILSSIAR
FT                 LFDPLGLIAPVIISGKLILKDVTMAKKTHADGTMATLDWDDEVPNALAERW
FT                 QAFRDGLLRIGDISIQRWIHYSPGAIVSAQLHAFCDGSSTSYAAATYLRLQ
FT                 HQDGTCYASLLAAKSKVTPTKPLTIPRTELSGAVLAVKLVKWLTAARWIND
FT                 LPIQTFYWTDATILLHWLHGDVNRWKTFVANRVAFILDHSAPSQWGHVGTS
FT                 ENPADCATRGLSPGELAGYGLWWRGPEWLTRCQGDWPSTEVGQADMNDAAL
FT                 EAKTDKVRVHHTVPLPSLIERFSSFTQAVRVVAYVFRFKSNTAGKGERRTG
FT                 PLGIEELDHALFAIVRIVQGESFASELTAVKNSKRLPSRSKLSSLSPILVE
FT                 GILRVRGRLRHSGLSHERRHPIIIPSSHHFTQLVIRYSHILTLHGGAQLTL
FT                 AHTRQRFWILTGRQAVRSIVRKCVRCFRARPITSAQLMGDLPIHRVNPPSR
FT                 PFLATGVDYTGAIELKAARLRGTAGYKGYIAVFICLATKAVHLEAVTGLTT
FT                 EHFLLALGRFTGRRGIVQHLYSDNGTNFVGADNLMKAFYGKLQEDYEKLIA
FT                 PKLASQRTTWHFNPPQSPNFGGLWEANVKSVKHHLKRVIGDRRLTYEELST
FT                 VLISIEACLNSRPLCPLTADADDLEVLTPAHFLIGDSMLAPPEYRPQSKSF
FT                 VEQFLVQQSMIRHFWKAWSRDWLANLQQRPKWCQETEGIQLHDLVIIKDDR
FT                 FPPSQWLLGRVVELHPGTDALVRVVTLKTKQGHLKRSVSKLCPLPIRS"
XX
SQ   Sequence 5889 BP; 1440 A; 1469 C; 1601 G; 1373 T; 6 other;
     tggtggccca tgaggggaac ctgcaagtta aaacgttaaa gttggcaatt tggtgtgtaa        60
     atagatttcg ttagatcgcg gccgcgttaa gtttgcaagt cggctcggca aattgcctga       120
     aaagaggaaa gcgatacata gkcgcaacaa cggcggtttt cggaattgtc gagacgattt       180
     tcttctgcgc ttattcccgg cctctcgaaa cacgggaaaa aggaaacgac gatacataga       240
     cgccgcagct gcaggtcacg gaactttcga gacgcttctt cttggttttc gctgcttctg       300
     gagggtggaa tcttgtgtgt aaacggagta agtggacaag ttgcgtgcga gacaagaatt       360
     taccgaattt tcaaattaca tgatttttgg gttggtgagt tgcgctaagt ttgttttacg       420
     ttcggcakca tgaaatctga ttcggaggct ccgactttgg agcagttagc aaatttgcag       480
     gcaaatcgtt accaatctct caaatcggtc ttgcagaatt ttaagaagga ttcgccatcg       540
     aggaaaacaa gaatttatct aaagaagcgt ctggaacaag tggaagaaat taggaacgcg       600
     tttcgggaga cggattccgt gatcgtgaat ctagaagggt ttgcgggctc aagctatgcc       660
     gggaaaagtt tcctgtcgga attcgaggag cgctatatgg acgcctattg cgccatcgcg       720
     gaggacttgg acaaacttgg atccgagatt ccggcaccgc cgcccccaac aggtgggggc       780
     gccgacccgg aagtgcgact gaacatgcca cagatggcag ttcccaagtt ctccggtgag       840
     tgtgtgagct ggccaggata ttatgacgcc ttcatgagcc tcatacacaa caacaacaat       900
     ttgagtaatg ttcaacggtt acactttctc aaagagtcgt tgccaccagg gcgcgataat       960
     gacatccgac aaatgcagct catggagtca aactacgccg tggcgtgggg aatgatgatt      1020
     aaaaggtata ataatcctcg tctcgtcttt tctcaccaca tgaacgctat ctacgctttg      1080
     cccaggttgc aaagagatag tacmgaatta ataagatcga tgttaagcac ggtcaatgtt      1140
     tgcctggctg cattccgccg cgttcaagcc ttggacgggg aatcgcagca ctggttggcg      1200
     cattacgtag catcgaagct gcccaaggag acccataacg cttgggagca tcatcaagga      1260
     agcggcgccg ccgttccgac ctacaaggaa ttggaatcat ttttgaatga tcggctgatc      1320
     ataatggatg cgattgagaa ccgaagctcg tcgtacgact ccaatattgg cccaggatcc      1380
     accgacccka gcaaacgagt gcgagtgcat aatgcacagg agcgcttagg acgggcgaat      1440
     agcgcctgct accactgtgg gggcgaccat attctgcgtc gttgcacagc ctttctggcc      1500
     ttggactgct atcagagaaa ggatatagtg agcagagcga aattatgtat taattgtttg      1560
     agcaagtcac atgcgctgcc gcgctgcacc agcaacaaga gctgccaagt atgtgggcag      1620
     cgccatcaca ccctgttgca cttcccagta atggctcagc cggcccggcc ttcaacgccg      1680
     catcttagtg cacccacagc cacggagaac atatctcagc agagccggcg gtcaagttcg      1740
     agtcaaaacc caagcgcatc ttacagatgc cattcggcaa cgtcgccgaa tgtttcttcg      1800
     aggagcgtac ttctcgccac tgctcgtatc accgtgcgaa atccggtcaa cgggctgcaa      1860
     gccatcatta acgctctcat cgatcaagga tccgaggcaa ctatagtatc tgagcacgtc      1920
     gtacagtccc tgcatctgac gcgggccagt acccgagcgt ccatttttgg ggtcggcccc      1980
     ggggttggtc gtcgttgcaa gtataaggtc aatttcgaaa tcggcagtat tattaaccca      2040
     actttttctt tagaggtcga ttcagcatac gttctccctt cggttacttc ctgcctgccg      2100
     agtcttagct tcacgccaca gcgttgggat catattcgag ggctctcgtt ggcagatcct      2160
     cactactccc ggtcgaagcg agtcgacctc attctaggag tggacatgtt ggcgcaaata      2220
     atgttgccag acaccaggat cggactgccc ggcgagccct tagctcagaa tacgcacttc      2280
     ggatggattc tctctggacg tgcagaaggc gtgagggaat caacccagtt gcgctgtcat      2340
     cgagtgcttt tggacaccga ggcatggctg aagcgcttct gtgaggtaga gtcagtccca      2400
     gaacgccctt cgttatcgga gggggacctc tggtgcgagg ccttctttca gaagacttac      2460
     gtacgtcgag gggatggccg ctatatagtg cggttgccct ttaaaaccta tcgggaccca      2520
     gccatggtcc taggaagatc tcagcaaatg gcgcttaatc ggttcctaca attggaaaga      2580
     cgcctgtcca gcagtccaga ccggtggagc aaatatgtgg atgagatcga ggaatacttc      2640
     gcgctcgagc aaatagcgcc ggctgtgggc agtgaaagta gttcagtaaa gaatacttcc      2700
     actaatatgc atgtaacctc ttgtgtactc ccacatcacg ctgtcttcaa gaaggagcct      2760
     cagtcggcaa aacagcgaat cgtcttcgac gcctcctcaa ggacaagcaa cggaaggtcg      2820
     ttaaacgata ttctgtggac cgggcctaca ctgcaaaacg acatgtcggc agtcatactc      2880
     aattggcgga aatatcgttt cgttttcacg gcggatatac aaaaaatgta tcgctgcatt      2940
     gatgtgcacc cggaagacgc ccaatatcag cggattttat ggagggcggc ggatggatcg      3000
     atccacgttt atgcattgtc gacgctaacg ttcggaacgg cttctgcgcc cttcacggcc      3060
     atcagggtca ttcaacagct agcgaaggat gaacggcgtt catttcctaa agcggaagag      3120
     gtgttgatgc atgagatata cgtggacgac attctttccg gaggacattc gatagaagag      3180
     acggaagaca agaggaccca ggtggcgggg gcgataaaat ccgcgcgcat ggagttgcgg      3240
     aaatggtcca gcaatgaagc gagtatcctg ctctctattc cgttggagca tcagtgcagt      3300
     cagacaccwt taaactggga caccacggat cctatcaagg cgctaggaat gtattggctt      3360
     ccaaataagg actgtttcaa atttcggatc aattttgaga taccggatag cttaaccaaa      3420
     aggatgattc tgtcaagcat agcaaggctg tttgacccgc tgggwctcat cgcgccggtc      3480
     atcatctcgg gaaagttaat actgaaggac gtaactatgg cgaagaaaac gcatgcagac      3540
     ggaaccatgg caactctgga ttgggacgac gaggttccta atgcgcttgc ggaacggtgg      3600
     caagcgtttc gggacggctt gctaaggatc ggcgatatta gtatacagcg gtggattcat      3660
     tattctcctg gagccatagt ttcggctcag cttcacgcgt tttgtgacgg gtcgtcgaca      3720
     tcctatgcag ctgcgactta tttaaggctc cagcaccaag atggaacgtg ctacgcctct      3780
     ttgttggccg caaagtcaaa ggttactcct accaaaccct tgaccatacc taggacggag      3840
     ctgagtggtg ccgtactggc cgtcaagttg gtgaaatggt taaccgcggc caggtggata      3900
     aatgacctcc caatccagac cttttactgg acggatgcta caattcttct gcattggcta      3960
     cacggggacg tcaatagatg gaagactttc gtcgctaaca gggtcgcctt tattctggat      4020
     cattctgcgc catcgcaatg ggggcatgta gggactagcg agaacccagc agactgtgcg      4080
     acaagagggc tatctccggg tgagctagcg ggctacggct tgtggtggcg aggcccggag      4140
     tggcttacac gctgtcaagg tgactggccc tcgacggagg tcggtcaggc cgacatgaat      4200
     gatgccgcct tagaggcgaa gacggataaa gttcgcgttc accacacagt cccgctgcca      4260
     tcgttgattg agagattttc gagtttcacc caggccgtga gagtcgtagc gtacgtattt      4320
     cggttcaagt ccaatactgc cggaaaagga gagaggcgca ccggtcccct aggcatcgaa      4380
     gagctcgacc atgctctatt cgctatcgtg cgcatcgtcc aaggggagtc tttcgcatcg      4440
     gagctgaccg cagtaaaaaa ttctaaacgg ctgccctcca gaagtaagct ctcgagcttg      4500
     tcaccgatct tagtagaggg catactgcga gtaaggggga gattgcgcca ttctggtctg      4560
     tcgcacgagc gtcgccatcc aataatcatt ccaagctctc atcattttac acaactagta      4620
     atacgctatt cgcatatctt gactctgcac ggaggtgcgc agctaactct ggcgcacact      4680
     cgccaacggt tctggatact gacaggaagg caggcggtgc gatcgattgt acggaaatgt      4740
     gtgaggtgct ttcgggcccg gccaatcacg tcggcacagc ttatgggaga tttgccgata      4800
     cacagagtga acccccctag tcggccattc ctggcgactg gagtcgatta cacaggcgct      4860
     atagagctga aggcagcgcg gttgcgagga actgccggtt acaaaggata catcgccgtt      4920
     ttcatttgcc ttgcaacaaa ggcagtgcat ctagaagcgg tgacaggcct caccacggag      4980
     cattttctgc tagctctggg aaggtttacc ggtcggcgag ggatcgttca acatctctac      5040
     agtgacaacg gaaccaactt tgtcggcgcg gacaatctga tgaaggcatt ctacggtaag      5100
     cttcaggagg actatgagaa gctcatagcc cccaagctcg cttcgcagcg aaccacctgg      5160
     cactttaatc ctccgcagtc gcccaatttt ggcgggctgt gggaggctaa tgtgaagtcg      5220
     gtgaaacatc atctcaagag ggtcattggg gatcggaggc tcacctatga ggagttgtca      5280
     acggtgctca taagcataga ggcgtgcctc aactcccgac cgctctgccc tctcacagct      5340
     gatgcagatg atctcgaggt gctcacaccg gcgcactttt tgattgggga ctccatgctg      5400
     gcgcctccgg aatatcgacc tcagtccaag tccttcgtgg agcagtttct agtccagcaa      5460
     tccatgataa ggcatttctg gaaggcttgg agtcgagact ggctagccaa tctgcagcag      5520
     agacccaagt ggtgtcagga gactgagggc attcagctcc acgaccttgt catcatcaag      5580
     gatgaccgat ttccgccgtc gcaatggcta ctggggcgcg tcgtggagtt gcacccaggg      5640
     actgacgcgt tggtccgggt tgtaacgctc aaaaccaagc aaggccattt aaaacggtca      5700
     gtgtcaaaac tttgtccact gccgatacgt tcttagagct ctcactttgc gcacctcaac      5760
     cataatgaat tgtttcttgc gcacgtttct tgtctcattt ctccatacta gattctaccc      5820
     cgcctaccac cgtgcaggat ctggacaagc ggagatgttt catgcttagt ctagcattgg      5880
     cgggcggca                                                              5889
//
ID   BEL-11_DSer-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-291
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2017-2017 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 291 BP; 75 A; 61 C; 77 G; 78 T; 0 other;
     tgtttggttt ggtcgcttgt cccattgtgc gggagagcgg cgttcggctg gtcgctcgct        60
     cggtgttgga tagtgcatac gagagagatg gaatgagagg agaagaacag tctgcatttg       120
     cgaacgacga ggaacgcacg ccgccgatct aacgccgtac tattaacaca cacacgcctg       180
     tatatagaat ggtaaattaa atattgaatt tattcgttgt gtttgatctt gcctggggaa       240
     cccctcttac aatgacctct tgctaataat acaaggggac acaactattc a                291
//
ID   BEL-11_DTa-I repbase;    DNA;    INV; 6469 BP.
XX
AC   AFFI01007631;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DTa_;
KW   BEL-11_DTa-LTR; BEL-11_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6469
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007631; Positions  120567  127035.
XX
CC   Positions [5538-6098] - Integrase core
CC   'CTTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..2521
FT                 /product="BEL-11_DTa-I_1p"
FT                 /translation="MNLRSKKKLGFDSSEMAGTSTPTPNSRDQSEDEMDSD
FT                 KDQTILDLKEKVPENDMFRNMMDMMKSIKDAQTELTARVNSLRDGQANQVI
FT                 LMENRLMTMCKSEIRSACEIMEENTKRTLARVDAHNHGAIGSALVSGSVGD
FT                 PHNLGAHGGANTHGATGSADNIDVNGGAFVSGACAGAHNLGPTGGAHNQGS
FT                 TGSADNLGVHGDACTHGATKSALVPGSVGDPHNLGATGGANNPGAYAGAHN
FT                 LGTHGSANNLGPNGGAHNHGATGGADNLGAHGGAYTRSATGGALVHGSVGD
FT                 PHNLGVRGGANTHGVTGDACTHGAIGGALVSGSVGDSHNLGAHGGANTHGA
FT                 TGGADNLGAHGGANTHGATGGADNLGAYGGANTHGATGGADNLGAHGGANT
FT                 QGATGGADNLGAHGGAYTHGTIGSVHSLGAVAGANGGANAFNEEAFGRGPT
FT                 GGCHGSVITGEAFGRGPTGGCHGSVITGEAFGRQTRNVGMYGSDNVNGVNW
FT                 NGIGDINSNMVEQQHSRNIHPRKLIDLPEFNGNPESWPVFSTMFWESSNAY
FT                 GYTNLENLLRLQKSLKGVAREEVKGLLINPANVRYIIERLQFTYGRPEMLI
FT                 NSQMNMVNQITPVTENNLEKIVLFASKVDNLVIFLKSANATQHLQNPALIE
FT                 SLVGKMPLSKRVQWIEHSSQIQLYPNLDHFSNWLSTMARSIARATVSAPVN
FT                 TKQTKNEQKGPLKSILHSSKNETKVNKMECYQCQGEHYLYTCEHYLKADIP
FT                 EKWKMIKDLRLCFGCLRRGHTLQACKYKRECKKNGCKKNHHTSLHSEDPQK
FT                 GRESRAQRSYD"
FT   CDS           2577..6446
FT                 /product="BEL-11_DTa-I_3p"
FT                 /translation="MLGPNNKIIQTYAFLDEGSSASLINEKLADSLGVLEP
FT                 KRKLTLNWIENHAKEFLSMECNLRIRAYGADKKWMRIVGNSVPTLDLPLQS
FT                 VDVDKLTEKYALLRNLPINGFTNAEPMMLIGINNCHLIANIKSVYLDTNLI
FT                 AAKTPLGWLIYGSADDQKKGSPRVSVVLHACSKKDSNEQEIHDMIADYFTT
FT                 ENFGVKIPKKPLESAGISRARDILKNTSRKLNGCYETGLLWKEDVFKFPDS
FT                 YKMALQRLQGIENKMHGLGKMAEYDNAIMDFINKGYAVKMSDQEAALVGPR
FT                 TWYLPHFGVININKPKKMRLVFDAAATINGISLNTMLLKGPDENPPLTTIL
FT                 FKFRQGKVAVCADIKEMFLQVQVRKEDQDSLRFLWRHGNRDAQIDTYRMTV
FT                 LIFGAACSPSCAQYIKNINAENAEIYREQVIDAIQTKHYVDDFVASFESED
FT                 DALQISREVKRVHKLGKFELRGFVSNSKIIQQSLNNTEENELVAPTVQLDS
FT                 DTTDKILGMCWDSRSDKFVFDLKLNRVDKEIVKGLKCPTKRQLLSLVMSVY
FT                 DPFGMLADLMIHGKILIQDVWRSGIHWNDLIPDNLFSKFKLWVLELEKAKQ
FT                 FELSRCYLPEFLSAKDNIELHIFVDASEQAFATVAYWRISCGGDTKLVFVA
FT                 GKTRCAPLKMLSIPRLELQAAVLGTRMRKTILDNHDVIVNGTTLWSDSRPV
FT                 ISWIRSDHRQFKPFVAHRVSEILETTSETDWSWVPTHLNTADKATKSTKSP
FT                 KYVTGSEWISGPEFLLAEKDSWPTMDFSFSSDDGTERRKTTMTVQTTQFID
FT                 ISRFSNYLRLKRMMGWCLRFVNNCQKRIQEKEKGELSAHELFLAELKLCKL
FT                 VQNQVYADEVAELQRSQSVAKSSSIYSLSPNLNAHGVLVVAGRLDYAIDIP
FT                 ISQRQPIILPSRNIFTELIVKWYHEAYHHQNDETIVNEVRRTFWITNIRKA
FT                 VTRAKSLCQHCKNFKAKPITPLMGQLPKERVTPYQRPFSFVGLDYFGPVFV
FT                 TIGRRQEKRWVALFTCLTVRAMHLELAADLSTDACILCIRNFVNRRGIPVT
FT                 IKSDMGTNFVGADNELKKIKDLFDWDYIKSEMSNKAIDWQFNCPSNPSSGG
FT                 CWERLVRSTKRVLSVTLKEKAPHVETLRSLLIEAENIVNSRPLTHLPVNID
FT                 DPEPLTPNHFLLGTTNSTQTPGDANNFCHRKQYRIAQQLKDHFWSRWIKEY
FT                 LPTLTRRTKWHSRTKPISVGDVVIICEDNQPRGSWKKGIIISTIPAKDGHI
FT                 RLAEVETSSGILKRPVSKLAVLDVLGKTP"
FT   CDS           456..1640
FT                 /product="BEL-11_DTa-I_2p"
FT                 /translation="MALLEAHLFLDLLGILTILALMEALILMAPLEAQTIL
FT                 TLMEAHLFLAHVQAHTILAPLEVHTIKALLEAQTILAFMETLVLMALLKAH
FT                 LFLDQLEILTILALLEAQTILAHMQAHTILALMAAQTILALMEVHTIMALL
FT                 EAQTILALMEALILVVLLEAHLFMDQLEIHTILAFVEALILMALLETLVLM
FT                 ALLEAHLFLDLLGILTILALMEALILMALLEAQTILALMEALILMALLEAQ
FT                 TILALMEALILMALLEAQTILALMEALILRALLEAQTILALMEALILMELL
FT                 DQCIVWALLLALMEARTHLTKKHLVEALLEDVMVLSLLEKHLVEALLEDVM
FT                 VLSLLEKHSVVKLEMSVCTGLIMLMGLTGMVLVTLIVTWLNNSTPEIYIQE
FT                 N"
XX
SQ   Sequence 6469 BP; 2039 A; 1259 C; 1510 G; 1661 T; 0 other;
     tctttattaa atttgtaata gtagaccgtc aaagtgcgca gttagaattg cgaaatatta        60
     gcaattctgg tgaaattcag taatgaattt gcgcagcaag aaaaaattgg gatttgattc       120
     gagcgaaatg gctggtactt ctacaccgac gccaaacagt cgagatcagt cagaagacga       180
     gatggattcc gacaaggatc agacaatcct ggatctaaaa gagaaggttc cggaaaatga       240
     catgtttcgg aatatgatgg atatgatgaa aagcataaaa gatgctcaaa cagaattaac       300
     tgcacgagtt aatagcctaa gagatggtca agcaaatcaa gttattctta tggagaaccg       360
     attgatgacg atgtgcaaaa gtgaaatcag atcggcttgt gaaattatgg aagaaaatac       420
     aaagcgtaca ttagctcgtg tagacgcgca caatcatggc gctattggaa gcgcacttgt       480
     ttctggatct gttggggatc ctcacaatct tggcgctcat ggaggcgcta atactcatgg       540
     cgccactgga agcgcagaca atattgacgt taatggaggc gcatttgttt ctggcgcatg       600
     tgcaggcgca cacaatcttg gccccactgg aggtgcacac aatcaaggct ctactggaag       660
     cgcagacaat cttggcgttc atggagacgc ttgtactcat ggcgctacta aaagcgcact       720
     tgttcctgga tcagttggag atcctcacaa tcttggcgct actggaggcg caaacaatcc       780
     tggcgcatat gcaggcgcac acaatcttgg cactcatggc agcgcaaaca atcttggccc       840
     taatggaggt gcacacaatc atggcgctac tggaggcgca gacaatcttg gcgctcatgg       900
     aggcgcttat actcgtagtg ctactggagg cgcacttgtt catggatcag ttggagatcc       960
     acacaatctt ggcgttcgtg gaggcgctaa tactcatggc gttactggag acgcttgtac      1020
     tcatggcgct attggaggcg cacttgtttc tggatctgtt ggggattctc acaatcttgg      1080
     cgctcatgga ggcgctaata ctcatggcgc tactggaggc gcagacaatc ttggcgctca      1140
     tggaggcgct aatactcatg gcgctactgg aggcgcagac aatcttggcg cttatggagg      1200
     cgctaatact catggcgcta ctggaggcgc agacaatctt ggcgctcatg gaggcgctaa      1260
     tactcagggc gctactggag gcgcagacaa tcttggcgct catggaggcg cttatactca      1320
     tggaactatt ggatcagtgc atagtctggg cgctgttgct ggcgctaatg gaggcgcgaa      1380
     cgcatttaac gaagaagcat ttggtcgagg ccctactgga ggatgtcatg gttctgtcat      1440
     tactggagaa gcatttggtc gaggccctac tggaggatgt catggttctg tcattactgg      1500
     agaagcattc ggtcgtcaaa ctagaaatgt cggtatgtac gggtctgata atgttaatgg      1560
     ggttaactgg aatggtattg gtgacattaa tagtaacatg gttgaacaac agcactcccg      1620
     aaatatacat ccaagaaaac tgatagattt accagaattc aatggaaatc cagaatcatg      1680
     gcctgtgttc tcaactatgt tttgggaatc atcgaacgca tatgggtata caaacttgga      1740
     gaacctttta cgattgcaga aaagtctaaa gggagtggct agagaagagg ttaagggtct      1800
     attaattaat ccggctaatg taaggtacat tatagagcgg cttcagttta catatggaag      1860
     gccagaaatg ttaattaaca gtcagatgaa tatggttaac caaataacgc cggtaacaga      1920
     gaataactta gaaaagatag tcttatttgc atctaaggtt gacaatttag ttatattttt      1980
     aaaatcagcc aatgccactc aacatttaca aaatccagcc ctgatagaga gcctggtagg      2040
     taaaatgcca ctcagtaagc gggttcaatg gatcgagcat tcatcgcaaa ttcagcttta      2100
     tccaaattta gatcacttca gcaattggct gagcactatg gcaagaagca ttgcaagggc      2160
     aaccgtatca gcaccggtaa ataccaaaca gacgaagaat gagcaaaagg gtccgttgaa      2220
     atcaatttta cattcttcca agaatgaaac taaagtgaac aagatggagt gctatcaatg      2280
     tcagggtgaa cattatctgt atacctgtga acactattta aaagctgata ttccagaaaa      2340
     gtggaagatg ataaaggatc ttcgtttatg ttttggttgt cttcggcgtg gacacactct      2400
     gcaagcttgc aagtataagc gggagtgtaa gaagaacgga tgcaagaaaa accaccatac      2460
     gtctttacat tcagaagatc ctcaaaaagg aagagaaagt cgagcccaaa gaagctacga      2520
     ttaacacaat caagccagca actccacaat tgttgttcaa ggttttggcc gttgaaatgt      2580
     tggggccaaa taataaaatc atacagacgt acgcattttt agatgaaggt tcgtctgctt      2640
     cattaataaa tgagaaatta gcagatagtc tgggcgtact tgagccaaaa agaaagttaa      2700
     ctttaaactg gatagaaaat catgcaaagg agtttttgtc gatggaatgc aaccttcgta      2760
     taagagcata tggagctgat aaaaaatgga tgcgtattgt tggaaactca gttccaactt      2820
     tagatctacc tttgcagtca gtggatgtcg ataagctcac tgagaagtat gcactgctga      2880
     gaaacttacc aattaacgga tttacaaatg cagaacctat gatgttaata ggaattaaca      2940
     actgtcactt aatagcaaac ataaaaagtg tatatctaga tacaaaccta atcgcagcca      3000
     agacaccgtt gggttggctt atttatggtt cagccgatga ccaaaagaaa ggatcaccac      3060
     gagtatctgt agttttacac gcatgctcca aaaaagatag caatgaacaa gagatccatg      3120
     acatgattgc agattacttt acaacggaaa acttcggtgt aaaaatacca aaaaagccct      3180
     tggaatctgc cggtatatcc agagccaggg atatattaaa aaacacgtct aggaaactaa      3240
     atggctgtta tgaaactgga cttctttgga aagaggatgt gttcaaattt ccggacagtt      3300
     acaaaatggc tctgcaaagg ctgcagggca tagaaaacaa aatgcacgga cttggaaaaa      3360
     tggcggaata tgataacgcc attatggatt tcataaataa aggatatgca gttaaaatgt      3420
     cggatcaaga agccgctctc gttggaccgc gtacgtggta cttaccccat tttggtgtaa      3480
     ttaatataaa caagccaaaa aagatgagat tggtatttga tgcagcggct acgatcaacg      3540
     gcatttccct gaataccatg cttttaaaag gacctgatga aaaccctcca ttgacgacga      3600
     tcctttttaa attccggcaa ggcaaggtag cagtatgtgc tgatataaag gaaatgtttt      3660
     tgcaagtgca agtccgtaag gaagatcagg attcgttgag atttctttgg agacatggca      3720
     atcgcgatgc tcagattgat acatacagga tgacagtcct tatatttgga gcagcatgct      3780
     cgccatcatg tgctcaatat ataaaaaata ttaacgccga aaacgctgag atttacaggg      3840
     aacaagtaat tgatgccatt caaacgaagc attacgtgga tgacttcgta gctagtttcg      3900
     agtctgaaga tgatgccctc caaatcagcc gggaagtcaa gagggtccat aagttgggaa      3960
     agtttgagct cagaggtttc gtttccaact caaagataat tcagcagtcc cttaacaaca      4020
     cggaggaaaa cgagttggta gcaccgactg tccaactaga cagcgacacg acagacaaga      4080
     ttttaggaat gtgctgggat agtcggtctg acaagttcgt atttgatctt aagctaaacc      4140
     gagtggataa agaaattgtt aaaggactga agtgccccac taaacgccaa ctgctgagtt      4200
     tggttatgtc tgtatatgat ccctttggta tgttagcaga tctaatgata catggcaaaa      4260
     tcttgataca agatgtttgg agatctggaa tacattggaa cgacttgata ccggacaatt      4320
     tgttttccaa gtttaagctt tgggtacttg aattggaaaa ggcaaaacag tttgagttaa      4380
     gtaggtgcta tctgccagaa tttttgtcag ctaaagataa catagagctc catatttttg      4440
     ttgatgcgag cgaacaggcc tttgcaactg tagcatactg gcgcatatct tgtggcggag      4500
     atacaaaatt agtctttgtt gctggtaaga ccagatgcgc accgttaaaa atgttatcaa      4560
     ttcccaggct tgagttgcaa gcagcagtgt tgggtacgcg tatgagaaag acaatcttag      4620
     ataatcatga tgtcatagta aatggaacaa cactgtggtc agactcccga cctgtcatct      4680
     cttggattcg gtcagatcat cgacagttta aaccatttgt tgctcatcgg gttagcgaaa      4740
     ttcttgaaac gacatctgaa accgattgga gctgggtgcc aacgcactta aacacagcag      4800
     acaaggcaac aaaatccacc aagagtccaa aatacgtcac cggaagcgaa tggataagcg      4860
     gtccagagtt tttgcttgct gaaaaagatt cttggcctac gatggacttc agcttttcgt      4920
     cagatgatgg cacagagagg cgtaaaacta ccatgactgt tcaaactacc cagtttatag      4980
     atatcagccg attctcgaat tatcttcgat tgaaacgcat gatgggatgg tgcttgaggt      5040
     tcgtaaacaa ttgtcaaaaa cggattcaag aaaaggagaa aggagaatta tctgcccatg      5100
     aattattcct cgcggaatta aaattgtgca agctggtaca aaatcaagta tacgcagatg      5160
     aggtggctga gttacaaaga tctcaatctg tagccaagag cagttccatt tatagccttt      5220
     ctccgaatct aaatgctcat ggagttttag tggttgcggg aagattggat tatgccatcg      5280
     acattccaat atctcaacgc cagccaataa tattgccgtc cagaaatatc ttcaccgaac      5340
     ttatcgttaa atggtatcat gaggcatacc atcaccaaaa tgacgagacc attgtaaacg      5400
     aagtaagacg cacgttctgg atcacaaata taagaaaagc ggttactcgg gcaaaatctc      5460
     tttgtcaaca ttgtaagaat ttcaaagcca aaccaatcac tcctttaatg ggtcaactgc      5520
     ccaaagagag agtgacaccg tatcaacgac cgttctcctt tgtaggacta gactacttcg      5580
     gcccagtttt cgtcaccatt ggaaggcgac aagaaaaaag atgggttgca ctctttacgt      5640
     gtttgaccgt aagagccatg catttggagc tggctgccga tttgtccacc gacgcatgca      5700
     ttttgtgcat acgaaacttc gtaaatagaa gaggtatccc tgtaactata aaatcagaca      5760
     tgggaacaaa tttcgttggt gccgataatg agctaaaaaa gatcaaagat ctctttgact      5820
     gggattatat caaatcagaa atgtcaaata aagcaattga ttggcagttc aattgccctt      5880
     caaatcccag ttcaggcgga tgctgggaac gcttggtgag atcaaccaaa cgtgttctga      5940
     gtgtaacgct taaggagaaa gctccccacg ttgaaacgct aaggagtttg ctaattgaag      6000
     ctgaaaatat agtaaatagc cgtcctttga ctcatcttcc cgttaacata gatgatccgg      6060
     aacctttaac gcctaatcat tttttgcttg ggacaactaa ttcaacccaa accccagggg      6120
     acgccaacaa cttttgccat cgcaagcaat accgaattgc tcaacaatta aaagatcact      6180
     tttggagtcg atggataaaa gaatacttgc cgactttgac tagacgaaca aaatggcatt      6240
     cccgaaccaa gccgatctcc gttggagatg tcgttattat ttgcgaggat aatcaaccta      6300
     gaggaagttg gaaaaaagga atcatcataa gcacaattcc agctaaagac ggccacatca      6360
     gattggcaga agtcgagaca tcctcaggga ttctcaagcg tccagtatca aagctagcag      6420
     ttttggatgt attgggtaaa actccatagt tgttttacgg tgggtggga                  6469
//
ID   BEL-11_DTa-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   AFFI01007631;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DTa_;
KW   BEL-11_DTa-I; BEL-11_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-280
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007631; Positions  120287  120566.
XX
SQ   Sequence 280 BP; 84 A; 56 C; 46 G; 94 T; 0 other;
     tgttgctagt tcattaaaat ccatataaat ttatcgccat tcacccttta acgtatcagc        60
     ccgctttcga tatttatgcc ttatcacgag atcgcgtcgc ccatcaccga gttgcagttt       120
     gtgtaaagaa gacggcgcga caacacaatt taataaatgt aacttcattt ctgtttaaaa       180
     cttgcgatta gactttacaa tttgttctaa aataaactaa aagcatagtt taaatgaatg       240
     ttctatttgg tgttgtcttt tgccacacgg agtggcaaca                             280
//
ID   BEL-11_DWil-I repbase;    DNA;    INV; 5682 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DWil_;
KW   BEL-11_DWil-LTR; BEL-11_DWil-I.
XX
NM   BEL-11_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5682
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..5667
FT                 /product="BEL-11_DWil-I_1p"
FT                 /translation="MWSWPKVVEKKLEALKSQELRDVHFAIYTKFVRDNFV
FT                 KRELRKFKGLPYDSKKRLEHIDCISKELGANALQRVCQFLEISPQEGIDCT
FT                 EMASKIYDAISYETSGKSSGNVIQASNANQSENQFENMNQLEVLRGIEAID
FT                 VENVELQDEISKKEILMLGVKRQLSKAQTGGASADVIEEHEYEIQQLSLEV
FT                 KVLNARAEALVSKKHTLNTTVALIRSSTSSQKSVMSDGDHPTNESLSISNG
FT                 DNNIQSTVITMLARQSLGNKNLEFDGSSHLAWRHFKTQFIKSGSECQYSGE
FT                 EDVYRLDKSLKGAARKKVDILLMSAKEPSKILAILDNIYGAPENVAFELMA
FT                 KAQEIKYVKEIGDFHEFNCSVQNINSALEFVQCKFIDTQKLLATLIERLDE
FT                 SFLREWGSFLTARKLRAAECNFEIFAEWTQEQSRLYHDICFYKKIITINNV
FT                 DNEAQKKFGSQIQSQKVTQTRSTSKCFICDEDKHSLDKCSKFRKAEVKKRW
FT                 DYASTSNACFTCLKFHKGQCNNREQCKIDNCERYHHRLLHKAKQPHLQSLP
FT                 QAISGCIQEVQEAAILKMLPVILRGPTGEKEILAFLDDGSTTTMLDINVAR
FT                 EVGIIGKPEPYCFGWTEGISRYDETSEIADIAITGDSKIQKLQNVRLIKDL
FT                 NLPTQRIDYEAIQKEFPYTKMAKLNSIRNVQPHLLIGQRHATLLTTQTILN
FT                 VDPKGPIMAKTKLGWVIHGPIKAKVREADFVCCHIEDEHLGDMLKNQFSIE
FT                 GFGVCKPATDKTKSTEEKLAISKISSSIIRVNGQYQVNLPWKSDMVELPDS
FT                 RQMAEQRLKCLERKLNRNSELARAYQKEVEKLLKNGYAKIVTNVNLVKSPK
FT                 LWFLPHFAVINPKKPGKVRVVFDAAAICNGTSLNENLLTGPDWLSSIVGVL
FT                 IRFRLNTIAFAADIKEMFNQVKIAKEDAVSQCFLWRNMNTQIPPTVYQMTS
FT                 MIFGATSSPFIAQFVKNHNAAIHKNEAPEAAQAIIENHYVDDYLDSKATVR
FT                 EAVEIIHAVIKIHAAGHFQIRNFICNNHDVLQGIPEDLRGPLTRIRLGEKG
FT                 DISQKVLGMIWDAQKDIFIFSTTTMHSISEDILNGTRMPTKRKVLAAVNSI
FT                 YDPLGMVTPVTIKGRILMRSIWELGIGWDDVIKGDPVKKWQEWLNDLKRLH
FT                 DVSIPRCYSQYLSIATKVELHVFCDASSKAYAAAAYIRVSYKDAEAATKYD
FT                 VMLIASRARVSPLKHVTIPKLETLAAVMGCRLAETIENEMHLKFDKRFFWT
FT                 DSLTVISWINSNERLQVFVANRISEICEKSKRAEWNWVPTMENIADIITRD
FT                 SPIKVATDRWQQGPAFLGLDKKMWPQPKLKAPTEPGLMMLVHQDDHPFKIL
FT                 ENRISKFTKLVRATAWVKRFIENVKAKRCKMELRRGDIVVEEYNWSLSKWY
FT                 LHVQAECFHNDIIYAKTGKITGGLRLTKYCLSMSEDEILRINSRIIRAEGV
FT                 VATSPIVLDGDQVFTKLMVQHFHNEVQHTGIQVVVHKFKSQYWMPKMNTKI
FT                 KRIINECMWCRRRKAKPVKAQMGILPKERFSTFQKPFTSVGMDYFGPFYTK
FT                 DGRGSSGRYNKCLRKRYGVLFTCLTSRAIHAEIAHSLTTDSCILAIRRMMA
FT                 RRGEIKTLWSDNGTNLRGASRELTEALEEIDIQAARGELTQKGIEWKFIPA
FT                 NSPNFGGCWERLIGCFKRTLEAVLSVESNPTDEVLQTLFCEAEHLVNSRPY
FT                 ILESDDPDDGLGLCPNDIIIQQSGSIEAPCKINGSSEKKTWRMTQMLVEAF
FT                 WRRFIKEYIPSLVNRSKWEKNCDNLKEGELVVVKCMTPRGEWPIGIVLKTH
FT                 PGEDGIVRVADIKTTKNTYRRPVRNLCRLGLESRDIKDRAEDLVQH"
XX
SQ   Sequence 5682 BP; 1997 A; 1088 C; 1244 G; 1353 T; 0 other;
     taaaattggt ccttcgagcc ggatcattaa cgcgcataat acagtccaca atagttaata        60
     aaaatgtgga gttggcctaa agtggtagaa aagaaattgg aggcgttgaa gtcgcaagaa       120
     ttgcgcgatg ttcatttcgc catatataca aaatttgtta gagataattt cgtaaagcgc       180
     gaactacgaa aattcaaggg tttaccttac gattccaaaa agaggctgga acacatcgac       240
     tgcatctcga aagagctggg cgcaaacgct ttgcaacgag tatgccaatt cctagaaatt       300
     tcgccgcaag aagggataga ctgtaccgag atggcctcaa aaatttatga cgccatttcg       360
     tacgaaactt ctggcaaatc aagcgggaac gtcatacaag catcaaacgc gaaccagtcc       420
     gagaaccagt ttgaaaacat gaaccagttg gaagtattaa ggggaataga agccatcgat       480
     gtagaaaacg tggaacttca agacgaaatc tcaaaaaagg aaatattgat gcttggtgta       540
     aaaagacagc taagcaaagc ccaaactggg ggcgcttctg ctgacgtcat cgaagagcat       600
     gaatatgaaa tacaacagct gtcattagag gtgaaagttc tgaatgcacg cgcggaagct       660
     ttggtgagca aaaaacatac tttgaacact actgtagcac tgattcgttc gtctacctcc       720
     tcccaaaaat ctgtcatgtc tgatggagac cacccgacaa atgaatcgct atcgatctcc       780
     aacggcgaca acaacataca aagcactgta atcaccatgt tagccagaca aagcttaggc       840
     aataaaaatc tggaatttga cggttcctct catttggctt ggcgacattt taagacgcag       900
     ttcataaaat cggggagcga gtgtcagtat tctggagaag aggatgtata tcgtctcgat       960
     aagtcactga aaggggcagc gcgtaagaag gttgacattt tgttaatgtc ggccaaggag      1020
     ccatcgaaaa ttctagccat tttggacaac atatacggag ctccagaaaa tgtggcgttc      1080
     gaactgatgg caaaagcaca ggaaataaaa tatgtaaagg aaattggaga ttttcacgag      1140
     ttcaactgct ctgttcaaaa tatcaattca gcgctggagt ttgtacaatg caagttcatc      1200
     gatacacaaa agttgcttgc aaccctaatt gagcggctag atgaaagttt tcttcgagaa      1260
     tggggatcat ttttaaccgc tcgaaaatta agagctgcag aatgtaattt tgaaatattt      1320
     gctgaatgga cgcaggagca gtcgagattg tatcatgata tatgttttta taagaagata      1380
     attacaatca ataacgtaga taatgaagca caaaagaagt tcggatcaca aattcaatca      1440
     caaaaggtta cacaaactcg ctcaaccagc aagtgtttta tttgtgatga ggacaagcat      1500
     tcccttgata aatgtagtaa attcagaaaa gcagaagtga agaaacggtg ggattacgca      1560
     agcacaagta acgcctgctt cacatgtcta aaatttcata agggtcaatg caataatcgt      1620
     gagcaatgca agatcgacaa ctgtgaacga tatcatcatc gcttactaca taaggcaaaa      1680
     cagcctcatc tacaatcctt gccgcaagct attagcggat gcattcaaga agtccaagaa      1740
     gcagcaattc ttaaaatgtt accagttata ttacgtggtc caactggtga aaaagaaatt      1800
     ctggcttttc tcgacgatgg gagcacaaca acaatgttgg atattaatgt agcacgtgag      1860
     gtcggaataa ttgggaaacc tgaaccgtat tgctttggat ggactgaagg aatctctaga      1920
     tatgatgaaa cttcagaaat cgcagatatt gctattactg gcgatagcaa aattcagaag      1980
     cttcaaaatg tacgtcttat caaggatttg aatttaccaa ctcaacgaat cgattacgaa      2040
     gctatacaga aagaatttcc atatacaaaa atggcaaaat tgaactcgat tcggaatgtt      2100
     cagcctcatc tcctcattgg acaacgacat gcaacactcc ttacaactca aaccatacta      2160
     aatgtagatc caaagggtcc gattatggca aaaaccaagc tcggatgggt catacacggt      2220
     ccgataaaag caaaagtaag agaagcagac tttgtatgct gccacatcga ggatgaacat      2280
     ctgggcgata tgcttaaaaa ccaatttagc atagaaggat ttggtgtctg taaaccagca      2340
     acggacaaaa ctaaatcaac agaagaaaaa ttggctatta gcaagatatc ctcatctata      2400
     ataagagtaa atggacaata tcaggtaaac ttaccctgga aaagcgacat ggtggaactc      2460
     cccgatagtc gccaaatggc agaacaaaga ctaaaatgtt tagaaagaaa gctgaacaga      2520
     aacagcgaac tagcgcgagc ataccaaaag gaagtggaga agctactcaa gaatggttat      2580
     gcaaaaatag tcactaatgt caacttggtt aagtccccaa aactgtggtt cctgccacat      2640
     tttgcagtaa ttaatcccaa gaaaccggga aaagttcgag tagtgttcga cgcagcagct      2700
     atttgtaatg gcacttcctt aaacgaaaat ctactaactg ggccggattg gctttcatca      2760
     atcgtaggcg tgctaataag atttagatta aacacaatag cctttgctgc agatattaaa      2820
     gaaatgttca accaggtaaa aatcgccaag gaagatgcag tctcacaatg ctttttatgg      2880
     agaaatatga atacccaaat accaccaaca gtctaccaga tgacgtcaat gatattcgga      2940
     gcaacctcct caccatttat agcacaattt gtaaaaaacc acaatgcagc gatacataaa      3000
     aatgaggcac cagaagcagc tcaagccatc attgaaaacc attacgtcga cgactatctg      3060
     gattcaaaag caacagttcg cgaagctgtt gagataattc atgcagtaat taaaatacac      3120
     gcagcgggac attttcaaat tcgaaatttt atttgtaaca atcatgatgt cttacaggga      3180
     atacccgaag atctacgtgg tccgttaaca cggattcgat tgggcgaaaa aggagacata      3240
     tctcaaaagg ttctcggcat gatttgggac gcacaaaaag acatatttat tttctcaaca      3300
     actacaatgc acagcataag cgaggatata ctgaatggaa caaggatgcc tacaaaaaga      3360
     aaggtgcttg cagcagtcaa ctcaatatat gatcccttgg gaatggtgac tccagtaaca      3420
     ataaaaggtc ggatcttgat gcgtagtatt tgggaacttg gcattggatg ggatgatgtg      3480
     attaaaggcg accctgtcaa aaagtggcaa gagtggttaa acgatctgaa aagactacat      3540
     gatgttagta taccaagatg ttactcccaa tatttatcta ttgctacgaa agtcgaacta      3600
     cacgtttttt gcgacgctag cagtaaagca tacgctgcag cagcatatat tcgagtaagt      3660
     tacaaggatg cagaagccgc aacaaaatat gacgtcatgc ttatagcatc tcgggctcga      3720
     gtttcacctt tgaaacatgt taccattcca aaacttgaaa cattggcagc tgtgatggga      3780
     tgtagactgg cggaaactat tgaaaacgaa atgcatctaa aatttgataa aaggtttttc      3840
     tggacagact ccctaacagt gatttcatgg ataaacagta acgaaaggct gcaagttttc      3900
     gtagccaaca gaataagcga aatatgcgaa aagtccaaga gggcagaatg gaactgggtt      3960
     ccaaccatgg aaaacattgc tgacatcata acaagagatt cgccaataaa agttgccaca      4020
     gacagatggc aacaaggtcc agcctttctt ggtctggata aaaagatgtg gccacagcca      4080
     aaattaaagg caccaaccga accagggctt atgatgctgg ttcaccaaga tgaccaccca      4140
     tttaaaatac tggaaaatag aatttcgaag ttcacaaaac tggtaagagc cacagcatgg      4200
     gtcaaaagat ttatagaaaa tgtgaaagcg aaacgttgta agatggaact ccgtcggggc      4260
     gatatcgtcg tggaggagta taattggtct ctatcaaaat ggtatctcca tgtccaagcg      4320
     gaatgctttc acaatgacat aatctatgct aagactggca agatcacagg gggtttacgc      4380
     ctcactaaat attgtctttc tatgagtgaa gatgaaattc tacgtataaa cagccgaata      4440
     atacgtgcag aaggcgtcgt cgcgacaagt cctattgtgt tggatggaga tcaagtattc      4500
     acaaagttga tggtacaaca ttttcacaac gaagtgcagc ataccggaat acaagtcgtc      4560
     gtacataaat tcaagtcgca atattggatg ccgaagatga ataccaagat caaaagaatt      4620
     atcaacgaat gtatgtggtg tagacgacgc aaagccaaac cggttaaagc gcaaatgggt      4680
     atattaccca aggagaggtt ctctacattt caaaaaccat tcacatccgt tggcatggat      4740
     tatttcggcc cgttctatac gaaagatggt cggggctcca gcggcagata caataaatgt      4800
     ctgcgaaagc gatatggcgt tctctttaca tgcttaacat ctagagcaat acatgcggaa      4860
     atcgcacact ctttgactac agactcgtgc attttggcaa tccgtcgaat gatggcaagg      4920
     cgaggcgaaa ttaaaacatt atggtccgat aatggtacta atcttagagg cgcttcaaga      4980
     gaactaacag aagctctaga ggaaatagat atacaagcag cgcgcggaga actaacacaa      5040
     aagggaatcg aatggaaatt tataccagca aactcaccaa attttggagg ttgctgggaa      5100
     aggctaattg gatgctttaa aagaacatta gaggccgtac tatccgtcga aagtaatccc      5160
     actgacgaag tgctgcaaac tctcttttgt gaagcggaac atttggtaaa tagtcgaccg      5220
     tatattctcg aatcggatga tccagatgac ggcttaggat tatgccccaa tgatataatc      5280
     atacaacaaa gtggatctat tgaagcacca tgcaaaatta acggatccag tgaaaagaag      5340
     acatggagga tgacgcaaat gttagtggaa gcattctgga gacgattcat taaggaatat      5400
     atcccaagtt tagttaaccg atcgaaatgg gaaaagaatt gcgacaacct gaaagagggt      5460
     gaactcgtcg tagtaaaatg catgacacca agaggtgaat ggccaattgg aatagtactc      5520
     aaaacacacc caggagaaga tggaattgtg agagtagcag acataaaaac aaccaaaaac      5580
     acttatcgtc ggccagtaag aaacctatgc agattaggac tggaatcccg cgacataaag      5640
     gatcgtgctg aagacttggt tcaacactag ggggcggaaa ta                         5682
//
ID   BEL-11_DWil-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DWil_;
KW   BEL-11_DWil-LTR; BEL-11_DWil-I.
XX
NM   BEL-11_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-225
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 225 BP; 101 A; 36 C; 26 G; 62 T; 0 other;
     tgtcgcagaa aatactactt tatttatatt taagctatat taccgaaaaa taccattacc        60
     gttcatgaat ctagtatata agtcaattat catttttgtt gtaaaaagag atggtcactc       120
     tatataaaaa acgatggcga agaaaaacgt gcctaaaaga ataaaacaat aaagctctct       180
     aaaaaatata taataataaa aaaaaccacg gccaattcca caaca                       225
//
ID   BEL-11_FoCa-I repbase;    DNA;    INV; 5611 BP.
XX
AC   .
XX
DT   03-DEC-2019 (Rel. 24.12, Created)
DT   03-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5611
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2591-2591 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..5573
FT                 /product="BEL-11_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAPSALDKAESDRESVSDTLDYVELELTDHATTPLGE
FT                 RSVINQINILKTAQIDIMETHKKIISISPPDMKPHQVEYMRLLRKTDRLLS
FT                 AFTGIRMSFPNSSTSIPIPIPGTPVQPSSVDIRLPRLELPTFDGTLNDWVS
FT                 FRDLFVTAVHDNKSLSKSQKLTYLKSQVRGEASRQISSMIITDGNYDIAWN
FT                 SLHDRYQNDREILFAILRRFMNQPVVQQQSSSSIRQLVDVSQECIRSLDVL
FT                 KLPTDQWDALLLFIILSKMDSTSKELWEQSLKDSSIPKLKSLFDFLEQRAR
FT                 ALAASGTEATPSKTYNKKSGNGNNQSNHRPLVHHTNSPSHSSSPCKACNNE
FT                 SHYLYKCEVFLSWSPQQRIDFVRRNGLCYNCLKDNHRVTECNNKFGCKTCS
FT                 SKHHTLLHKPVANRPVNPQPQQHNPTAASVPAPARVNFTSIPQPVANEFDT
FT                 LLATALVQVADRHGQYHTFRVLADNGSNTNYITDSCIKRIGAPLRRCHTSA
FT                 TGLGGAYVANATGITQFTVSSHLDSTVTHFISRCLVTSKITEKLPTSYFDH
FT                 TKWSHLQGLQLADPLYYKPLDVDMLLGAEFFFAILECGKISGPPNSPVAIK
FT                 TSFGWLIGGGSSDIPLIQPRVNATLAQSLSSTTTTIGCDPTDENLDATLRK
FT                 FWEMDSEPSHRLPTQEETTIESHFKSTYTRDHAGRFTVQLPFKSPRPKLGS
FT                 SLNIAMKRLLLLERRLHSNPDARKQYVDFMKEYESLGHMQEVHPMDSDPSL
FT                 VCYVPHHFVLNESSSTTKFRVVFDASAKTSSGVSLNEGLMVGPNIQDSLVD
FT                 ILSRFRLHKIAFTADIKKMYRQIRVTPEDSNLQRILWRDDPSKPXKHYNLQ
FT                 TVTYGTASAPYLATRVLEETAVVSQQQLPRAAEVAGRDFYVDDLISGEPTV
FT                 PEAFQTQQELLSLTKDAGFELCKWXSNSQDVLDALPPEMRETSSLLSFDQD
FT                 SSIKTLGICWNPKTDQFLFRISPQEPTTTPMTKRSILSQIARLFDPVGWLA
FT                 PIIINAKILMQSLWKLKHGWDEPLPLEIQHQWTTLRSDMEGLSKLTINRFF
FT                 MQGTDLICPSLNRAFHSTTKFCLAGFCDASQKAYAAAVYLCVYDGPSSSSS
FT                 LITSKSRVAPVKTVSLPRLELCGAELLAELLMSVKSALRIPIHSISAWTDS
FT                 TVALAWINSPPSRWKTFVANRVTKIQERVPPTMWSHVRGEENPADCPSRGI
FT                 TCDELINHELWWHGPPWLRNQIPTPTTHHSQDSSEAIAEEKQATSLHTIVK
FT                 TDQLLLDRYSSFPKLLRVTAYVFRFIKNLKGHKYTPSPLFTGGLRAISDTT
FT                 NLSPLIAPTEVTYSPLSPDEINCAKLYWIRLVQQQEFPREIHALQAGQPVN
FT                 SKSKIVSFCPFLDSDGVLKVGGRLNHSDLPASQKHPILLTSHNPITHLLIN
FT                 HEHIINFHAGPQLLMSTLQRQYWILRLKDAVRRQIGKCVTCTKLRAKTMQQ
FT                 LMGNLPSFRVIPARAFLKTGIDYAGPFLLRPIQSRSKTTIKAYLAVFVCCT
FT                 TRALHLEVVSSLSTDAFLAALRRFISRRGRPTDLYSDCGTNFVGANHEMKD
FT                 FLKLVMSRPHNQAISDHLSKDGIDWHFNPPASPHFGGLWEAGXKSVKFHLR
FT                 RVMGTQRLTFEEMTTITSQIESILNSRPLTPEXNNPDDYNALTPGHFLIGA
FT                 PLNSIPEPTLEDIKISRLSRWQLLQQMVQSFWKRWSNEYLTRLQQRPKWMS
FT                 KSPNISIGAMVVIKDETQPPLKWKLGRIESLHPGPDAIVRVVTVRTSTGIF
FT                 KRPIVKLCLLPIDNSTPTPTIPSTPT"
XX
SQ   Sequence 5611 BP; 1547 A; 1599 C; 1092 G; 1368 T; 5 other;
     ttttttggtc tcgcgaaccg gattcaagat cctcatcgta agtgtgctta tagtgaactc        60
     taaccttatc agtgctttga atttgtaaag cccattctcg tgtggactgc tggacggacg       120
     ttcggaatcg gccagagctc atcagcagca ggcgcggatt gaacgccagc agtaacagag       180
     acatggcacc ctcagcgctc gataaggccg aaagcgaccg cgaaagcgtc agtgatacct       240
     tagactatgt ggaacttgag ctgactgatc atgcaaccac gcccctcggt gaaagatcgg       300
     tgattaatca aatcaacatc ctaaaaactg ctcaaatcga cattatggaa acacacaaga       360
     aaatcatatc aatttcgccc cctgacatga aaccccatca agtagagtat atgagactct       420
     tacgtaaaac agatcgactt ctctcagcat tcactggaat acggatgagt tttccaaata       480
     gctcaacctc aatcccaatt ccgattccag ggacacccgt tcagccctca tccgtggaca       540
     tccggctccc acgccttgag ctcccaacat ttgacgggac actgaacgat tgggtatcat       600
     tccgcgattt atttgtcact gctgttcatg acaataaatc gctcagtaag tctcaaaagt       660
     taacttactt aaagtcgcaa gtcaggggtg aagcatcacg acaaatttca agcatgataa       720
     taactgatgg caattatgat attgcgtgga attctcttca tgacaggtac cagaatgacc       780
     gggagatttt attcgcaatt ctccgcagat tcatgaacca gccagtagtt caacaacaat       840
     catcatcatc cattcgccaa cttgttgatg tatcacagga atgcatcaga tccctggacg       900
     tcctaaaact ccccacagat caatgggacg ccctactctt attcatcatt ttatcaaaaa       960
     tggattcgac atccaaggag ttgtgggagc agtcgttgaa ggacagctcc atccctaaac      1020
     tcaaatctct cttcgacttc ctcgagcagc gcgcccgagc cctcgccgca agtggtacgg      1080
     aagccacacc cagtaagacc tacaacaaaa agtctggaaa tggtaacaat caaagcaatc      1140
     atcgacccct tgttcatcat accaattctc catctcattc ttcttcccca tgcaaggctt      1200
     gtaataatga atcgcattat ctttacaagt gtgaagtctt cctgtcctgg tcaccccaac      1260
     agcgaatcga cttcgtccgg aggaacggtc tttgctacaa ttgcctcaaa gacaatcatc      1320
     gcgtcaccga gtgcaacaac aagtttggat gcaagacatg cagctcaaag catcacaccc      1380
     tcctccataa accagtagca aatcgacccg tcaaccccca accacagcag cataacccca      1440
     cggcagcatc ggtcccagcc ccagcccgtg tcaacttcac atcgattccc cagccagttg      1500
     caaacgagtt tgatactctg ctggctaccg cattggttca agtagctgat cgccatggtc      1560
     agtaccacac atttcgagta cttgccgaca acggaagtaa cacaaattac atcacggact      1620
     cctgcatcaa acggatcgga gctccattga gacgttgcca cacctccgcc actgggttgg      1680
     gaggagcata cgtcgcgaac gccacaggaa tcacgcagtt cactgtgagt tcacatcttg      1740
     attcaaccgt aactcatttc atctccaggt gtctcgtcac gagcaaaatc acagaaaaat      1800
     tgccaacttc gtatttcgat cacaccaagt ggtctcatct gcaagggttg caactagccg      1860
     accccctcta ctacaaacct ttagatgtgg acatgctctt aggcgctgaa ttcttcttcg      1920
     ctattttgga gtgcggaaaa ataagtggac cacccaacag ccctgtcgct atcaaaacca      1980
     gcttcggttg gttgattggt ggtggttcat ccgacatccc actcatccag cccagagtta      2040
     atgccacact cgctcaatct ttatcctcga caacaacaac aattggctgt gatcccactg      2100
     acgagaacct agacgccaca ctacgcaagt tttgggaaat ggacagtgag ccatctcatc      2160
     gactcccaac ccaagaagaa actacaattg aatcccactt caaatctaca tatacccgcg      2220
     accatgcagg tagatttacg gttcagctcc ctttcaagtc accacgaccc aagctcggct      2280
     catcactcaa cattgcaatg aagagacttc ttttgcttga acggagactt cattcaaatc      2340
     cagatgcacg caagcagtat gtggatttca tgaaggagta tgaatcactc ggccatatgc      2400
     aggaagtcca ccccatggat tccgacccca gcctggtctg ctatgtgcca caccactttg      2460
     ttttgaacga gtccagctcc acaaccaagt ttcgtgtggt ttttgacgcc tccgcgaaaa      2520
     cctcatccgg tgtctctctg aatgaaggat taatggttgg tccaaatatt caggattcac      2580
     ttgtcgatat tctctctcgt ttcagactcc ataagattgc attcacggct gacattaaga      2640
     agatgtaccg acaaataaga gtgacccctg aggactcgaa tttgcaaagg atcttatggc      2700
     gagacgaccc atccaaaccg ktgaagcatt acaaccttca aacggtaacc tacggcacag      2760
     cttcagcccc gtatttggct acccgtgtgc tggaggaaac agcagtcgtc agtcagcaac      2820
     aactccctcg agccgcggaa gtcgcaggca gggattttta tgtagacgat ttgatttctg      2880
     gcgaacccac cgtcccagaa gcattccaaa ctcaacaaga actactcagc ctcacaaagg      2940
     atgcaggttt tgagttgtgc aagtggtmat ccaattccca agatgttttg gatgcacttc      3000
     ccccagagat gagagaaaca agttccctcc tctcattcga ccaagattcc agcatcaaaa      3060
     ctttaggaat ttgttggaac ccgaagacag atcagtttct tttccgcatt agccctcaag      3120
     agcccaccac tacaccaatg accaagagaa gcatcttgtc ccaaatcgct cgtctcttcg      3180
     accccgtagg ctggttggcc cccatcatca tcaacgcaaa aatccttatg cagtccttgt      3240
     ggaagttaaa gcatggttgg gatgaaccac ttccactaga aattcaacat caatggacaa      3300
     ctcttcgttc agatatggaa ggtttgtcta aactcacaat caatcgattt tttatgcaag      3360
     gaactgacct aatctgtccc agtcttaatc gcgcttttca ttctacaaca aaattctgcc      3420
     ttgctggttt ttgtgatgcg tcacaaaaag cctacgccgc tgctgtctac ctctgtgtat      3480
     acgacggtcc atccagttca tcgtccctca tcacttcaaa atcgcgtgtg gctcctgtca      3540
     agacggtgtc acttccgcgt ttggagctct gtggagctga acttttggct gaactcctga      3600
     tgtcagtcaa atctgccctc agaattccca tccattccat ctctgcctgg actgattcga      3660
     cagtggcact agcatggatc aattccccac catcaagatg gaagaccttt gtcgccaatc      3720
     gggtcaccaa gatccaggag agggtccctc ccaccatgtg gagtcacgtt agaggagaag      3780
     aaaatcctgc tgattgccca tccagaggaa tcacatgcga tgagcttatc aatcacgagc      3840
     tttggtggca tgggccaccc tggctgagga atcaaattcc aacccccaca actcatcatt      3900
     cacaagactc atcagaagca attgcagagg agaagcaagc aacttcactc cacaccattg      3960
     tcaaaactga tcaattgcta cttgaccggt attcatcatt tccaaagcta cttcgagtaa      4020
     ctgcctatgt atttcgattc atcaagaatc tcaaaggtca caaatacacc ccgtctccat      4080
     tattcaccgg cggactccgt gccattagtg acaccacgaa ccttagtcct ctcatcgcac      4140
     ccactgaagt tacttactct cctctcagcc cagatgagat caattgcgcc aagctatatt      4200
     ggataaggct cgttcaacaa caagaatttc ccagggagat tcatgccctc caagccgggc      4260
     aacctgtaaa ctctaaaagc aaaattgttt cgttctgtcc tttcctagat tctgacggtg      4320
     tgctgaaagt tggaggccga ctcaaccatt cggatcttcc ggcaagccag aagcatccaa      4380
     ttctcctcac atcccacaat ccaattactc atcttctcat caaccatgaa cacattatca      4440
     atttccatgc gggtccccag cttttaatgt ccactctgca gcgacaatac tggatcctgc      4500
     gactgaagga tgccgtccga cgtcaaattg gaaaatgtgt gacctgcacc aaactcagag      4560
     caaaaaccat gcaacaattg atgggaaatt tgccctcatt ccgtgttatc cctgccagag      4620
     catttctcaa aaccggtatc gactacgccg gcccattcct ccttcgaccc attcagtccc      4680
     gcagcaagac aacaatcaag gcatatttgg ctgtcttcgt ttgttgtacc actcgagccc      4740
     tacatcttga agtggtcagc agcctctcca ccgacgcttt ccttgctgca cttcgaagat      4800
     tcatctcccg cagaggccga cccacggacc tttacagtga ctgcggcaca aactttgtcg      4860
     gtgcaaatca cgagatgaag gattttctca aactggtcat gtctcgcccc cacaaccaag      4920
     ccatatccga ccatttatcc aaggatggga ttgattggca tttcaatccc ccagcttccc      4980
     cccactttgg cggactctgg gaagccggag kcaaatccgt aaagttccat ctccgtcgcg      5040
     tcatgggaac tcaacgactt acgttcgaag aaatgaccac gatcacatcc caaatcgaat      5100
     caatcttgaa ctcgcgccca ttgaccccag aaascaataa tcccgatgat tacaacgctt      5160
     tgaccccagg acacttcttg attggagccc cacttaactc tatccccgaa cccacacttg      5220
     aagatatcaa gatctcccgc ttatcacgct ggcaacttct ccagcaaatg gtccaatcat      5280
     tttggaagag gtggtccaat gagtacctca ctcgtcttca gcaacgtcca aaatggatgt      5340
     ccaaatcccc caacatttca atcggtgcca tggtggttat caaagatgaa acacaaccac      5400
     cgctgaaatg gaaactwgga cggatcgaat ctcttcatcc tggtcccgac gccatcgtcc      5460
     gtgtagtaac agtccgcaca tcaacaggca tattcaaacg cccaattgtg aagctgtgtc      5520
     tgctccccat cgacaactcc actccaacgc ctaccatccc gtcaactcct acttaatttt      5580
     tgttgaaaac agtttttcaa ggcgcccgga a                                     5611
//
ID   BEL-11_FoCa-LTR repbase;    DNA;    INV; 535 BP.
XX
AC   .
XX
DT   03-DEC-2019 (Rel. 24.12, Created)
DT   03-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-535
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2561-2561 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 535 BP; 129 A; 137 C; 64 G; 205 T; 0 other;
     tgtttgagtt catttgcttt atgtaatttt atgattatga ccatattctt atttatcatt        60
     cattgtgtat gtaattcaga ttttgactgt agttgaccat tttctcaact ttgccagcca       120
     atgcgctcag tttaatttgc ctatctatca gcagttcaat tctcttttcc agtccaaatc       180
     attcactctg ctcaagttta tttttacttt tgtccttttt gtaatattcc attaccttga       240
     gcagtctcct ataaaaggag gtcatttctc cctcctcgct gtcattctct ttttgtacgt       300
     accttgacca cgtcactttg tcactcaagt ccacaagtct caatttcgcc ccaatttgta       360
     catcaatata tttttaactg aagtaaatgt gactattttg attgtgataa cttgtgctca       420
     tcatcacgac tgattctcat ctccaacact catccaccac tcattcatcc cctgcttcca       480
     cggtcaccta cggcaacatt tccatccaac gagttcattc acacaaatcc ccaca            535
//
ID   BEL-11_LH-I repbase;    DNA;    INV; 5802 BP.
XX
AC   ADOQ01017742;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_LH_;
KW   BEL-11_LH-LTR; BEL-11_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5802
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017742; Positions    8263    2462.
XX
CC   Positions [4692-5270] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           471..5624
FT                 /product="BEL-11_LH-I_1p"
FT                 /translation="MEIALKKQMTTAGFIERFWDNLVKVGKDKMTRSFLSA
FT                 RLDLLERYWSTFYDAHYALMDFERVDASDYMKRDLYSTTEELYINMKARIT
FT                 SYIPPAKSTESKDDSSAVMRQIQLPKINLPTFSGDQLEWEGFRDLFKSLVH
FT                 NVDGLGATQKLQYLKASLTGEAAAVVANIEVSSEGYSSAWEELESRYDNRR
FT                 VLLATHMRVLLSVTPAAKSSATEINRLISVVNQASRSFRAMGRPVEQWDDW
FT                 FVHILVEKLDSATRLQWESSRKSSSDFPTYEELKEFLLTRSRALDAAAPRL
FT                 STQTTSSKSKRNGRRDDVSSHATSTNSDEKGSPCPLCKERHPLRACPRFKG
FT                 YSVEQRREQVRKRKACFNCLGQGHTAGACPSSFRCRQCNERHHTFLHMAGN
FT                 DTTSSQETPRAAAESTAHSERPSSSEETGQVAALSSSTSGTVLLATALVRL
FT                 IGESGKALTVRALLDSASEASFVSERVAQQLRLPRRRVNVTVSGLQGVTTG
FT                 QATHAVTLMVGADRSPSLRIAIPRALVLSRLTTLTPGSRVARHDWPHLKGL
FT                 ELADPEFDKPAAVDAVLGADVYGMLFDGGVKRGPPGQPTAHLTVFGWVLMG
FT                 PLTRADSNSIATHHTILPPDLQEDLRRFWELEEVSTEPIQTPEESYCERLF
FT                 AETHTRDEGGRYIVRLPRRENPPTGLGASRRGAQRMLLSTERRLERMPSLK
FT                 SKYAEFMCSYLSLGHMESVPSGEKEACSSYYMPHHAVVKPTDPDGRIRVVF
FT                 NASFRTTTGVSLNDVLLPGPKLQADLWLVLTRWRLHQFAFTTDIVKMFRQI
FT                 CVHRDDMDLQRILWRANPAAEVHDFRLSTVTYGTASAPYLAIRVLLQLARD
FT                 EESRFPRGAAAIRSNTYVDDVLAGASSLEDALEVKSQVVGLLKAGGFELSK
FT                 WAGSHAALCPEGDKTERLFSTADTVGTLGVHWAPATDQLTLRAIPTLHSIG
FT                 NPTKRTVLSDVARLFDPAGWAAPVLIGAKIFLQELWMAGLDWDQPLPPTLQ
FT                 DRWLRLASALPELDRLSIPRWTGVTDADGRTNLQLHGFSDASERAYAAVIY
FT                 LRGTGPNGAHTTSLLVAKTKVAPVKPVSIPRLELCGALLTARLLQRTATGL
FT                 GLTSEHLYAWTDARVVLAWLRAHPSRWKPFVANRVAAVQGIVPADRWRHIP
FT                 TAENPADAATRGISPSELSSLRLWWKGPPWLAGPTESWPKEARNDVESNEE
FT                 RRLHAATVGRGENEENELLVRFSSLAKLIRVSAFCLRVLRRGARTRTTHLS
FT                 AQELDDCRLRWIRIVQRQDFAGELEALTREAPLPRKSPLRALRPFLGLDGL
FT                 IRIGGRLENAPLNYDEKHPIILAKGSHLSLLMVRDAHHRTLHGGPQLTRSV
FT                 LARRYWVIHANTLIRAVIHRCVRCARFRTTAAQQQMGQLPADRVRAVRPFL
FT                 SAGVDYAGPIQLRTSKGRGHKSYKGYICLFVCMATKAVHLEAVSDLSTTTF
FT                 LAAFRRFVARRGRCAHLTSDNGTNFRGADRELREMFGAASKFHQECKELLA
FT                 SDGTEWGFIPPSAPHFGGLWEAGVKSAKHHLRRVLGEQTPTYEELSTLLCQ
FT                 IEACLNSRPLCPLSADPTDFVALTPGHFLIGEAPINVPEPSTLRIPPGQIT
FT                 IRSRLITNMRDHFWHRWSQEYLQHLQQLGKWRERTANIQPGALVLLRDNLL
FT                 PPAKWALGRVRAVHPGADGLVRVVTVDTAIATLKRPIAKICPLPGSSDS"
XX
SQ   Sequence 5802 BP; 1209 A; 1700 C; 1727 G; 1166 T; 0 other;
     ttgctggtcc ttcgagccgg attgcgtgca cgacgcccac acggtaagcg atcttatctc        60
     gttctagact ttgtgtgtaa ttatattgct agacattaga cattgctaga caatttattt       120
     ttatttttat taacaattat tagagttagt gacattcgcg acagtgacgc tttgattagt       180
     gaaataagtg aaagtgcggg agtgaccacg cgatcgaaac aatagtgccg ttccgcgccc       240
     ccgcgcgcgt ttcgcctacg gttcgaccgc ccgtcgctcg gattctcgcg ctagtgacgt       300
     cccgcgttcc gcgcccatct tgcctatcgg ctcgggcgat ccgtcgctcc gcacacgccg       360
     cgttcacgtg ttcgcgaccg cgatcagctg agcgtatctt cgcggaattt cacgtgcggt       420
     tgtcgcgctt tgtctcacgc tcgcttttcc gtcgcgtata aatctccacg atggagatcg       480
     cgctgaaaaa acaaatgacc acggccggct ttatcgaacg gttttgggat aacctcgtta       540
     aagtcgggaa agataaaatg actcgatcgt ttctctcggc gcgcctcgat ttattagaac       600
     gatactggtc gaccttttac gacgctcatt acgcgctcat ggattttgaa agggtggacg       660
     cgtccgacta tatgaaacgg gacctttatt ctacgaccga ggaactttat ataaatatga       720
     aggctcgcat tacctcgtac attccaccgg ccaaatccac ggagtcaaaa gatgactcga       780
     gtgcggtaat gaggcaaatc caattgccga aaataaatct gccgactttt agcggcgatc       840
     aattggaatg ggagggtttt cgcgacctat tcaaatcgtt ggttcataac gtggacgggc       900
     tcggcgcgac gcagaaactc cagtatctga aggcaagcct caccggggag gctgcggccg       960
     tcgtggcgaa tatcgaggtg tcctcggaag gatactcgtc ggcgtgggaa gagctggagt      1020
     cgagatacga caaccgacgg gtgctactcg cgacgcacat gcgagttctc ctctcggtta      1080
     cgccagcggc gaaatcatcc gcgacagaga tcaatcgcct gattagtgtc gtgaatcagg      1140
     catcgcgctc cttccgggcg atgggacgcc cggtggaaca atgggacgac tggttcgtcc      1200
     acattctagt ggagaagctc gattccgcta cccgcctcca atgggagtct tcgcgcaaat      1260
     cgagcagtga ctttccaacg tatgaggagc tcaaggagtt tctcctcacg cggtcgcgcg      1320
     cgttggacgc cgccgcgccg cgactttcga cgcagacgac ctcgagcaaa tcaaagcgga      1380
     atgggcgacg agacgacgtc tcgtcacacg caacctccac gaacagcgac gaaaagggat      1440
     cgccgtgtcc gctgtgcaag gaacggcatc ctttgcgggc gtgcccgcgc tttaagggat      1500
     attcggtgga acagcgccga gagcaggtgc gtaagcggaa agcatgcttt aactgcctgg      1560
     gacagggtca cacagcagga gcctgtccat cctcattccg ctgccgccaa tgcaacgaga      1620
     ggcatcacac gttccttcac atggcgggga acgatacgac atcttcgcag gagactcctc      1680
     gagctgcagc agaatccact gcgcactcgg agaggccttc gtcctcggag gagactggac      1740
     aggttgcagc gctgtccagc tccacctccg gcacagttct cctcgcgacg gcgcttgttc      1800
     gcctcatcgg agagtcgggg aaagccctga ccgtacgagc gctactggac tcagcatcag      1860
     aggcgtcttt cgtctcggag cgcgtggctc agcagctgag actgccgaga cgtcgagtca      1920
     acgtcacggt ctcaggcctg caaggcgtca ccaccggcca ggcgactcat gcggtgacct      1980
     tgatggttgg agccgaccgg tcgccatctc tgcggatagc aattccgagg gcattggtgc      2040
     tgtccagact caccacgctg acaccaggaa gtcgcgttgc gaggcacgat tggcctcatc      2100
     ttaagggtct ggaattggct gatccagagt ttgataagcc tgcagcggtt gacgccgtgc      2160
     tgggagccga cgtatacggc atgttgttcg acggcggcgt gaagcgcggc cccccaggac      2220
     agccaaccgc tcacttgact gtcttcgggt gggtgctgat gggcccactc accagggcag      2280
     attcaaacag catcgccacc catcacacca tactaccacc ggatcttcaa gaagatcttc      2340
     gccggttttg ggagctggag gaggtgtcaa cggagccgat ccaaaccccc gaggagtcat      2400
     actgcgagcg actcttcgca gagacacaca cacgcgatga gggaggccgc tatatcgtgc      2460
     gacttcctcg acgggagaac ccgccgacgg gacttggagc ctctcgtcgg ggggctcaac      2520
     ggatgctgct cagcacggag cgtcggctcg agcggatgcc gtcgctcaag tcaaagtacg      2580
     cagagtttat gtgttcttat ctgtcgttag ggcacatgga gtcggtgccc agcggggaga      2640
     aggaagcctg tagctcttac tatatgccgc atcacgcagt agtaaagccg acggatcctg      2700
     acgggaggat cagggtggtt ttcaacgcct cgttccggac cacgactggc gtttccttga      2760
     acgacgtgct gctcccaggt ccaaaactgc aggcggatct ctggctcgtt ctcacccgct      2820
     ggcgcctgca tcagttcgcg ttcacgacgg acatcgtgaa gatgtttcgt cagatttgcg      2880
     tccaccgaga cgacatggat ctacagcgga tcttatggcg ggcgaaccca gctgcggagg      2940
     tacacgactt tcgcctctct accgtcactt acggtacggc gtctgcgccg tacctcgcga      3000
     ttcgcgttct gttacagctg gcgcgagatg aagaatcacg tttccctcga ggggcagccg      3060
     ctatcagatc caacacgtac gtcgacgacg tactcgcggg agcgagctct ttggaggacg      3120
     cgctcgaggt caagagccag gtggtgggcc tcctcaaggc gggcggcttt gagctaagca      3180
     aatgggccgg atcacacgcc gctctttgcc ccgagggaga caagactgag cgccttttct      3240
     caacggcgga caccgtcggc actctcggcg tgcactgggc cccagccacc gaccagctca      3300
     cactgagagc aattccgacg ctacactcga tcggaaaccc gaccaagcga accgtgctct      3360
     cagacgttgc gaggctattc gacccggcgg gttgggctgc tcctgttcta ataggggcaa      3420
     agatcttttt gcaagagctc tggatggccg gcctggattg ggaccaaccg cttccgccga      3480
     cgctgcaaga tcgctggctg cgactagcgt ctgccttacc ggaattggac cggttgagta      3540
     ttccccggtg gacgggagtc acggacgcgg acggccgtac gaacttacag ctgcacgggt      3600
     tctccgatgc gtcggagaga gcttacgcag ccgtgatata tttgaggggc actgggccga      3660
     atggcgctca tacaacgagc ctacttgtcg ccaagaccaa agtcgcaccg gtgaagccgg      3720
     tgtcgattcc acgactggag ctgtgtgggg ccctgctcac cgcgcgacta ttacaacgga      3780
     cggccacggg actcggactc acaagcgagc atctttatgc ctggactgat gccagggtag      3840
     ttctggcatg gttgcgggct cacccctccc gctggaagcc gttcgtggcc aaccgagtgg      3900
     ccgctgtcca ggggatcgtg ccggccgatc gctggcgcca cattcctacg gcggagaatc      3960
     cggcagatgc tgccactaga ggcatctcgc ccagcgaact ctccagtctt cgactatggt      4020
     ggaagggccc cccttggctg gcgggtccaa ccgagtcttg gccgaaggag gcgcgtaacg      4080
     acgtcgagag caacgaggag cgccgcttgc acgcagccac ggtgggacgc ggcgagaacg      4140
     aagaaaacga acttctcgta agattctcct ctctcgctaa actaatacgc gttagcgcgt      4200
     tctgtcttag ggtcctcaga cgaggggcgc ggacgagaac gactcacctc tcagcccagg      4260
     aactggacga ttgccgccta cgatggattc ggatcgtgca gcggcaggac ttcgcgggcg      4320
     agctcgaggc cctcactcgc gaagcccctt taccgaggaa gtcaccgttg cgggcactgc      4380
     ggccattcct cggactggat gggttgatac ggataggcgg acgactggag aacgcgccgc      4440
     tgaattacga cgagaagcac ccgatcatcc tggcgaaggg gagtcatctc tcgcttttga      4500
     tggtgcgtga cgcgcaccac cgtacgctcc atggggggcc tcaactgacg cggagcgtct      4560
     tggcccgtcg gtattgggtg attcacgcca acacgctcat tcgcgccgta atccaccgtt      4620
     gcgtgcgatg cgcgcgcttc cgaaccacag cggcacagca acagatggga cagctgccgg      4680
     ccgatcgtgt gcgggctgtg cgcccgttct tgtccgcagg agtggactat gccgggccaa      4740
     tccagctacg cacctcgaag ggacgagggc acaagtccta caagggctac atatgcctat      4800
     tcgtttgtat ggccactaag gccgtacact tagaagcggt ttccgatctt tcaacgacaa      4860
     cctttttagc tgctttcagg cgattcgtgg caagacgagg tcgctgcgcg catctgacga      4920
     gcgacaacgg gacgaatttc cggggtgcgg accgggaact ccgcgagatg ttcggtgccg      4980
     cctcgaaatt ccaccaggag tgcaaggagt tgctggcgtc cgacggcacc gagtggggct      5040
     tcatcccacc ttcggctcca cactttggcg ggctatggga ggctggggtc aagtccgcaa      5100
     agcaccacct ccgacgcgtc ctcggggagc agaccccgac ttacgaggag ctttccacac      5160
     tcctctgcca aattgaggca tgcctcaatt cgaggccgct ctgtccgctg agcgcggacc      5220
     ccacggactt tgtggctctg acgcccggtc acttcctcat cggggaggct ccgatcaatg      5280
     taccggagcc ctccacgttg aggatccccc cgggacagat aacgatcaga tcacgactga      5340
     tcactaatat gcgtgatcat ttttggcaca ggtggtcgca ggagtacctg cagcacctcc      5400
     aacaattggg caagtggagg gaacgcacgg ccaacatcca acccggcgcc ctcgtgctgc      5460
     tgcgagacaa ccttctgcca cctgccaaat gggcgctcgg acgggtgcga gcggtacatc      5520
     cgggagctga tggactggtc cgcgtggtga ccgtcgacac ggccatcgcc acgttgaagc      5580
     ggccgatcgc gaagatctgt ccgctacccg ggtcatcgga ctcatagagt caaccaggcg      5640
     agcgaatcac ggcgggcggc cgccctacat ctccaccctg tttcgtcgct aggacgaggc      5700
     gggcggtatg ttggagagcg agcgaaaatc cgcgagatat cggcggccga attacgaagg      5760
     tcgcgcgatc gaaacatgtt ttcgatcccg atatcgaaaa ca                         5802
//
ID   BEL-11_LH-LTR repbase;    DNA;    INV; 394 BP.
XX
AC   ADOQ01017742;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_LH_;
KW   BEL-11_LH-I; BEL-11_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-394
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017742; Positions    2461    2068.
XX
SQ   Sequence 394 BP; 79 A; 100 C; 107 G; 108 T; 0 other;
     tgctattgtc accgcgccga ctcagcgttt ttccctttat ttagtattgt catattcggc        60
     agcgcgggcg tccttccctt gcttgcaggg tggatcgagg agctcggggc aaggggaagg       120
     aggccccgcg cgtatcgttt tcgcgcgctt cagagtgagt gtgcgatctg agcttctatc       180
     gatcgtcaca cgagcgagcg acggcttttc ggggccgaat tacgtgtctg tatttcggct       240
     catttgtacc tgagtgaact cagtcttatt tatcgaacaa ttaaatacgt tgtgagtgaa       300
     gtaaactgtg tgaagcgtcg tctcgatttc caatccacat cactctccgt ctccaaccgc       360
     aacgagcgag ttttcgaccg gcgagacgag aaca                                   394
//
ID   BEL-11_MoPha-I repbase;    DNA;    INV; 6051 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6051
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1137-1137 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           626..5788
FT                 /product="BEL-11_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MANDDVNTLKRRRATILGSCTRIRNFVEAAESVTPSV
FT                 AAQXEERKIKLENHWTEYDIVQTKLEMHDESEANHRVTFEDAFYSLSAKIR
FT                 EMLNISTRGTAMVAPASLDANQAQESDRIKLPKLDIPKFSGKYDEWFSFYD
FT                 TFKSTVHENKSLSNVQKLRYLKSALLDSALKLINSLEISDINYEVAWNLLQ
FT                 ERYCNQRVIVQDHISAILDLATMKRENVIELRQIADGATTHIQALQALKRP
FT                 TSEWDDILIIILSRKLDARTLRDWRLSLKGSELPTLKQFLGFITHRCQTLE
FT                 TASRPDVNSPKNENTQSQSNTKRQSSCTATIKSKCGFCNGEHLIYYCQNFL
FT                 ALPVSQRVLEIRKRKLCTNCLRSIDHSSNKCPSSNCRVCKAKHNTLLHLAT
FT                 AETKEKEKRDRATESGAETSPTSSSAAVVTHSTHSLDGKCVMLSTAVVYAY
FT                 DSKGSRKSCRVLLDSGSQANFISKRFSDALGLPTNSIDISISGVNKTVTRS
FT                 SKSTTVCLQSRTNAFSISSDCIITDQVTNKLPAFTMKRSAFEIPQNLRLAD
FT                 PQFHISSEIDILIGAEHFWDLLCVGQIRASPTHPTLQKTRFGWILAGRLSG
FT                 SPTSGQRIQSFHATVTNTQLRDQLSLFWQIEDVAENPNNHTIEEAQCEQHF
FT                 LQNLSRTPQGRFVVKLPCKEPGFDKLGESRDVALKRLYSLERRFRRDPELK
FT                 IQYSQFLNEYLALGHMMQIDEQSDDNSKSFYLPHHCVFKPTLGSNKIRVVF
FT                 DASSKSSTGTSLNEVLMVGPTVQQDLVSILLRFRIFRYVLAADIIKMYRQI
FT                 KVHPSQTRYQRILWRDDPNSDVKVYELVTVTYGTSSASYLATRCLKWLAER
FT                 YSSKYPSGSTSVGRDFYVDDLLTGADTIDQAKIIRDEVINLLRLGGFELSK
FT                 WASNCPDLLTDLSNQNNNVIIIDKDSESSLLGVHWNQTKDTLLFSYKNSDT
FT                 HDTVSKRTILSEVARLFDPLGLLGPVIVLTKLILQELWQLGSHWDESVPQH
FT                 LHSRWSELKSQLATINQLSIPRCVKFXTDPLSIQLHGFCDASQRAYGACVY
FT                 VRTQFKKNEYRTELLTSKSRVAPLKAVSLPRLELSAALLLARLIKKIGASF
FT                 DLTNLQTFLWSDSTIVLNWISSPSRQWSVFVANRVGEIQGITDPERWRHVK
FT                 SSDNPADILSRGLNPRELASSSIWWHGPTFLQQSDELWPNSEFVRTTKNHP
FT                 EQRQCHAATAVFENNIVDELLNRHSTLNKACRILSYCLRFSKPYRKFASTN
FT                 FISHQETQSALCIMCKVVQAQAFAEEHRALCKGNVINSSSSILSLSPFIGK
FT                 DGLIRVGGRLDNSDLNFDIRHPILLPRNHILTKRIIEQEHLRNAHAGTQAT
FT                 MAAVRQRFWPISMRSITRKIIKNCVTCFKTNPIYSEAIMGSLPAGRVTVSK
FT                 PFSHCGVDYAGPFLLRESKRRNARSHKAYLAIFVCFATKGVHLELVSDLTS
FT                 DTFIGALKRFVSRKGKPSCMYSDNGTTFVGAQRQLKEFFDFLSNEQTQTSV
FT                 QFFLRDQGTSWKFIPPNSPHFGGLWEAAVKSAKLHLHRIVGRSPLTFEELQ
FT                 TIFCEIEAILNSRPITPLSADPNDLAYLTPGHFLVGTALNSFPYENLIDIN
FT                 ENRLVRWQQIEQMRQHFWHRWSREYLHTLQERSKWKINKGEQLKLNQMVLL
FT                 QVQGLAPLQWLLGRVEEIHPGADNVVRTATIRTARGLYTRPLSKIAILPLD
FT                 S"
XX
SQ   Sequence 6051 BP; 1706 A; 1483 C; 1273 G; 1587 T; 2 other;
     tatggtcctt cgagccggat gcgccttttt catcacggca cgccgtgacg atcgacgcca        60
     tagaggagga tcgagagaca agcattacag taatatctgc gcggcaagga ggcgtgcggt       120
     cgggatttta caaagacata cgacttccca cgacgctttc ccttgtccga acgaacgagc       180
     cgatactcgg caacgtgccc atcgtcgagc gcttcagcat tgccacggcg acattcctca       240
     actactacaa gggcatcgat agactgcggc gacgcgtcta acatacaagg acggcaggtg       300
     attccctgca atattcctgt cgtcaagcgc acgagccgat ccacgacaac gtgcccgtca       360
     tcgagcgctt cagcagttcc agatcgacct tcctcatcta cgaggacatc aatcgacttc       420
     ggcgacgctc ttcgtcttcg acagcatcga gtgattctta cgaactcccc caccccctcc       480
     ttcttcgaag gcatcaggcg attcctgcga cgcttccgcc ttcgggcttg cgagcgtaga       540
     atcgagagcg aggtaaggtt aactcttcaa cggtcgttgc caaccatctt tgtttatcgc       600
     gtgaattcgc ctctatttat tcgccatggc taacgacgat gtaaacacac tcaaaaggcg       660
     tcgcgcaaca atattaggat catgtacgag gatacgcaat tttgtagaag cggccgaatc       720
     cgttacaccg tccgtagcgg ctcaattwga ggaacgtaag attaaattgg agaatcattg       780
     gaccgaatat gacatcgtac aaactaaatt agagatgcat gacgaatccg aagcaaatca       840
     ccgcgtcacc tttgaagacg cgttctattc cttgtcggcc aaaattcgcg aaatgctcaa       900
     tatttcgaca cgcggtacgg ccatggtcgc gccggcatcg ttagatgcga accaagcgca       960
     ggaatccgat agaataaaat tgccgaagtt agacattcct aaattttccg gaaaatatga      1020
     cgaatggttt tcgttctacg ataccttcaa atcaacggtg catgagaaca aatctctcag      1080
     taacgttcaa aaattgcgtt atctaaagag cgctcttctt gacagcgcgc tcaagctaat      1140
     aaattcctta gaaatttccg acataaatta cgaggtggcg tggaacttat tacaagagcg      1200
     ttattgtaac caacgtgtga tcgttcagga tcacataagc gcgatcttag atttagcaac      1260
     tatgaaaaga gaaaatgtta tcgaactgcg acaaatcgca gatggcgcaa cgacacacat      1320
     tcaggccctt caggctctaa agcgtcctac atctgaatgg gatgatatat taattataat      1380
     tttaagtcgc aaacttgacg cgcgcactct ccgcgattgg cgattgtcgc taaagggttc      1440
     tgaactgccc accttaaaac agtttctcgg ctttataaca catcgatgtc aaactctcga      1500
     gacggctagc agaccggatg tcaattctcc caaaaatgaa aatacgcagt cacaatccaa      1560
     cacgaaacgt cagtcttcgt gtactgcgac gattaaatct aaatgcggtt tttgtaatgg      1620
     agagcatctc atatattatt gtcaaaattt tttagcattg cccgtctccc aaagagtttt      1680
     agaaattcgt aagcgcaaac tgtgcaccaa ttgtctaaga tccattgatc attcttcaaa      1740
     taaatgccca tcaagcaatt gcagagtttg caaggcgaaa cacaatacat tgcttcatct      1800
     tgcaactgcc gaaacaaagg aaaaggaaaa acgcgatcgc gctaccgaaa gcggcgccga      1860
     aacgagcccg accagctctt cggctgccgt agtcacgcac tccacacatt ctcttgatgg      1920
     caaatgcgtt atgctctcta ctgccgtcgt ttatgcatat gatagcaagg gctctcgcaa      1980
     atcttgtcgc gtcttactgg acagcggttc tcaagccaat ttcatatcaa aaaggttctc      2040
     agatgcactc ggacttccaa caaattcaat cgacatctcg atctcgggtg taaacaaaac      2100
     agtcacgaga tcgtctaaat ccacaacagt atgtttacag tcacgtacca atgccttcag      2160
     catttcgagc gattgtataa tcacagatca agtaacgaat aaacttcccg cctttaccat      2220
     gaaaagaagt gcatttgaga taccgcaaaa tttgagattg gctgatccgc agttccacat      2280
     ctcatcagaa atcgacatat taataggcgc ggaacacttc tgggacttgc tctgtgtcgg      2340
     tcaaattagg gcctccccaa cacatccgac gttacaaaaa acgcgattcg ggtggatctt      2400
     agccggacga ctgagcggct caccgacttc cggacaacgc atacaatcat ttcacgcgac      2460
     cgtgaccaac acgcaattac gcgatcaatt atcgcttttc tggcaaatcg aggacgttgc      2520
     tgaaaatcca aataatcata cgattgagga ggctcagtgt gaacaacact ttttgcaaaa      2580
     cttatctcga actccgcagg gtagatttgt cgttaagctt ccgtgtaagg aaccaggatt      2640
     tgacaaactc ggagagtcaa gggacgttgc cctgaaaagg ctgtatagct tagaaaggcg      2700
     ttttagacgc gatcccgaat taaaaattca atactctcaa ttcttaaatg aatatttggc      2760
     attaggccac atgatgcaaa ttgacgaaca atccgatgat aattcgaaat ccttctactt      2820
     acctcatcat tgcgtcttca agcctactct gggttccaac aaaattagag tggtcttcga      2880
     cgcttcgagc aaaagctcta ctggcacctc tctgaatgaa gtactaatgg tgggtccaac      2940
     cgttcaacag gatctagtat ctatattact ccgattccgc atttttcgtt atgttctcgc      3000
     ggcggatatc attaaaatgt atcggcagat aaaggtgcac ccctcgcaaa cgcgctacca      3060
     acgcattctt tggcgggacg atccgaattc cgacgtcaag gtttacgaac tcgttacggt      3120
     tacatacggc acgtcttccg cttcttattt ggccactcgg tgtctcaaat ggctagccga      3180
     acgatactca agcaaatatc cgagtggctc tacatccgtg ggacgcgatt tttatgtaga      3240
     tgatctgctc acgggagccg atacaattga tcaagccaaa ataattcgcg atgaggtcat      3300
     taatttattg cgcttgggag ggttcgagct cagcaaatgg gcatccaatt gccctgactt      3360
     gttgacggac cttagcaatc aaaataacaa tgttattata atcgacaagg actcagaatc      3420
     atctcttttg ggggttcatt ggaatcagac taaagacaca ctcctttttt cttacaaaaa      3480
     tagcgacact catgatacag tttccaaacg aacaattcta tctgaggtgg ctcgattgtt      3540
     cgacccgcta ggcctattag gcccggtaat tgttttgacc aaactaatct tacaagaact      3600
     ctggcaattg ggctctcact gggatgagtc ggttccgcaa cacctccatt cgcgctggtc      3660
     ggaactcaaa tcacaattgg ctactatcaa tcagctctcc attccgcgct gcgttaaatt      3720
     castactgat ccgctatcca tacagcttca tggcttttgt gatgcaagtc agcgggcgta      3780
     tggagcgtgc gtctatgtgc gtacgcaatt caaaaaaaat gaatatcgta ccgaattgtt      3840
     gacttctaag tctcgcgttg caccgctcaa ggctgtatct ctgccgcgcc ttgaactctc      3900
     ggcagcattg ttgctagcgc gactaatcaa gaaaatcggc gcgtcatttg acctgaccaa      3960
     cttgcaaaca tttttatggt cagactctac aatcgtcctg aactggatat cctcaccgtc      4020
     gcgacaatgg tccgttttcg tagctaatcg agtgggcgaa atccaaggca ttacggatcc      4080
     agaacgttgg cgtcacgtca aatcttcgga caatcctgcc gacattttat ctcgtggact      4140
     caatccgcgt gaactagcaa gttcatcaat atggtggcac ggtcccacct ttttacaaca      4200
     aagcgacgag ctctggccta acagtgaatt cgttcgcaca acaaaaaacc acccggaaca      4260
     aaggcaatgc catgcggcca ccgccgtttt cgaaaataac atcgtagatg agttgcttaa      4320
     tagacactca actctcaaca aagcatgtcg cattctatca tattgcttaa ggttctctaa      4380
     gccttatcgc aaatttgcat cgaccaattt catatctcac caagaaactc aatcagctct      4440
     gtgcatcatg tgcaaggtag tacaagctca ggcgttcgca gaggaacata gggcgctatg      4500
     caagggcaac gttattaatt cttcaagcag cattttgtcc ctctctccat tcataggtaa      4560
     agatggatta attcgagtgg gcggaaggct agacaattca gatttgaatt ttgacatccg      4620
     ccatccgatt ttactaccgc gcaatcacat attaaccaaa cgtataatag agcaggagca      4680
     tctgcgcaat gcacacgctg gcacacaagc caccatggcg gcagtgagac aacggttctg      4740
     gccaatctcg atgcgatcaa ttacgcgaaa aattatcaaa aattgtgtaa cttgtttcaa      4800
     aacaaatcct atttattcgg aggccataat gggttcacta cccgcaggtc gcgtgaccgt      4860
     ttcaaaaccg ttctcccact gtggggtgga ctatgccggt ccctttctgc tacgcgaatc      4920
     gaaacgacgc aatgcccgta gtcataaggc ctatctggcc attttcgtgt gcttcgcgac      4980
     aaagggagtg cacttagaac tcgttagcga ccttaccagc gataccttta ttggcgcact      5040
     caaacgattt gtgtcgcgta aaggaaaacc gagttgtatg tattccgaca acggaaccac      5100
     cttcgtcgga gctcaaaggc aattaaagga attttttgat tttctaagca atgaacaaac      5160
     tcaaactagt gttcaattct ttttacgcga ccagggaact tcctggaaat ttatacctcc      5220
     caactctccg cacttcggcg gtttgtggga ggcagcagta aaatctgcaa aattacattt      5280
     acatcgaata gtcggaagat cgcctttgac cttcgaagag ttacagacaa tattttgtga      5340
     aatagaggcg attctgaatt cgcgtccgat tacgccacta agcgctgatc ctaacgactt      5400
     agcctattta actccgggtc atttcttggt tggcaccgcc ctgaacagtt ttccttacga      5460
     aaatctaatc gatattaatg aaaacagatt agtgcgttgg cagcaaatcg agcaaatgcg      5520
     gcaacatttt tggcacagat ggagccgaga gtacctacat actctccaag aacgttcaaa      5580
     atggaaaatt aataagggcg agcagttaaa gctcaatcaa atggtactat tgcaagtaca      5640
     gggcctcgca ccactccagt ggctactagg ccgagttgaa gaaattcatc cgggcgccga      5700
     caatgttgtc cgtaccgcta ctatccgtac agcaaggggt ttatatacta gacccctgtc      5760
     aaaaattgct attttgccac tagattcatg acatgttatt taatatccaa ctgtatttta      5820
     gcctacttaa gcgtcgactg tatattttta tattgagtca gttatccgtc ttgtaacctc      5880
     gacattcaga agattttctc atttgttacc ccttttaagc agattttatt gtatttccgc      5940
     attctgtgct ttaagttttt accttcgtaa ttgaattcgt ttgttttaga tgctacataa      6000
     acagctacgt tcatgcgttt tgaaagtgaa tcctttcaac gggggcggca t               6051
//
ID   BEL-11_MoPha-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-376
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1077-1077 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 376 BP; 85 A; 110 C; 81 G; 100 T; 0 other;
     tgtaggatat ttccgcctgc gccttttctc tcgaaatcat tccatcggga gctcgttcgc        60
     gtccgcgacc ggtcgttcac gctcgtgtta ccatgcgact tcgctaccgg tcgttcgttt       120
     tcggcggtct tcgtttccgc tcggggtctc gcgcttccat tgcagcagat cgtgagcggc       180
     cctcgccatg ctcactttac ataaccacaa aaacgcgtcg atcagtcgga atcatttttc       240
     ttttgtgtat ttctacctcc tcaataaagt acaaaataag aagactctaa atttcttcga       300
     acacaccttc ccgagaaatc acgccgggaa attcagtgtg tggggcacaa gcccgaaacg       360
     gccaaaagcc aaaaca                                                       376
//
ID   BEL-11_SI-I repbase;    DNA;    INV; 5319 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 19.02, Created)
DT   21-OCT-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SI_;
KW   BEL-11_SI-LTR; BEL-11_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5319
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 421-421 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4335-4913] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           783..2462
FT                 /product="BEL-11_SI-I_2p"
FT                 /translation="MKNGSAGELRRLYLGATGTIDNLECIGRPITNCEDLF
FT                 VHSVVDRLEPSSRLDWEELLRDRTDPPSYAELKLFLEQRLRVLEAVQPPKP
FT                 ESSVTKAASGDAKATRVHHVKGQEQKRSRCPLCKAEHFLMQCEAYRKKTPP
FT                 ERMQYVQEGSLCRNCLGSHRASECPSKRSCAVCGERHHSSLHDASREVALA
FT                 STSHHAGRPAHEPATALLATARIRVIDRFGGEHAARALVDPGAETSLITEA
FT                 LAQRLRLPRSRAAHAIFGVCEVQTAVSRGKVKLAFTSRLGGPTVTIKALVV
FT                 PRLTIYTSDGSGSAGDWPHLRGLELADPDYLANDPIEVLFGVGACAAILRD
FT                 GLRRGGPNQPIGQRTILGWIISGDLTDEDKDGPPRTSSLQCSVGDDLALSV
FT                 RRFWEQEELPSATTIPLTPDEQAAEDHFVKTHRRLQDGRYVVSLPLIEPLP
FT                 DFSSSRTTALRVLTHVERRLNRDATMRTMYAEFLRQYEDLRHMSLADPSPD
FT                 RLASRTCYLPHHGVLRAASASTKLRVVFNGSSSLASGGSLNEQSPSGTKPA
FT                 ASPSRRSPPVACA"
FT   CDS           2392..3927
FT                 /product="BEL-11_SI-I_1p"
FT                 /translation="MSSLLPGPNLLPALADVLLRWRAHKYVIASDIEKMFR
FT                 QIQVHQADRDLQRILWRHNRTDDVREYQLNTVTYGLACAPFLAMRTLRQLA
FT                 DDEESAYPLGAATLRRDVYMDDVLTGAATYKEAKEIQRQLARICSAGGFPL
FT                 KKWSANDAALLEEIPPADRLTSTSSLSWLPLESHPTLGLQWHPTSDHFTFS
FT                 FSEVSEAVPTKRSVLSQTARMFDPLGWLAPAVVRAKIHIQTTWLQGLGWDD
FT                 PLADADATAWKAFQSELHLLRRIRVPRWLRCSSDHVQLELHGFADASERAY
FT                 AAVAYLCVRSAEERTSSIIMAKTRVAPLKQVSLPRLELAGAALLARLVSHV
FT                 RSALSLQSVPVFLWSDSTVALSWIQGHPSRWTTYVANRVAEIQRTVPGAHW
FT                 RHVPGCDNPADCASRGVRPGELVAHPLWWSGPDWLTKEMTEWPPSAFPADQ
FT                 ELPEVRIRSHHVEVDPEEPAWVTRFSGLNRLIRVAAWCRRWLGGVRSAVGG
FT                 GGRPSTWTSWRLLACP"
FT   CDS           4308..5285
FT                 /product="BEL-11_SI-I_3p"
FT                 /translation="MADLPRPRVVPSRPFLHAGVDYAGPVMLRTSRGRGHK
FT                 AYKAFVAVFVCLSSRAVHLEVVSDYSSEAFLAALKRFTSRRGLCHTLYSDC
FT                 GTNFVGADRQLRDLFADSTVEGRRVADGLSNQGIRWRFNPPAAPHFGGLWE
FT                 AAVKSMKHHLRRVLGETTLTFEEMTTLLAQVEACMNSRPLQALSDDPEDLA
FT                 ALTPGHFLVGSAINAVPEPSLRDEPAGRLGRWQLVQRMRDQLWDRWSQEYL
FT                 HALSHRPKWWTTNSDIEVGRLCLLRSEINPPTKWPLARVISVRPGDDGRVR
FT                 VVTVRTATSELTRPVAKLVLLPVSSSGDCEAGTN"
XX
SQ   Sequence 5319 BP; 978 A; 1608 C; 1654 G; 1078 T; 1 other;
     ttctggtcct tcgagccgga tcattccgcc ggcgcgtgca gtgcatcagt gacactcgtg        60
     gtgactccgt tcctcagtgc ctttcggagt gtaactacct gtgaactata gactgaaaag       120
     atgagcatgg attttgagag tgccgttcga ctgcaagtcg aactgcgtgg ccgtatagcc       180
     aacacggcgg agaacatgcg aaagctcggt gccgcgaaca ttacggtcga cgtgatcgag       240
     aaccgcctcc agttgctcga caaaaactgg gagaggttcg aggccaggca cgcagaatta       300
     catagtaagt actgggatga tcacgaggac agcgattatt ttcgcgacgg ttacgcggcc       360
     gaaaccgagg aagtttattt gtcgcaacgc accgcgctta ccacgttacg acgctcgctc       420
     gtcgggaaca ccgcgggagc ggaaccgcga ccgcccgcga acgagcctcc gcgctacctt       480
     catacgctcc tcgcgcgacc ttgcccaaga ttaccgtgcc gcacttctcg ggcaagttcg       540
     aggattggcc atcatttcgc gacctttttc gctcgatcat cgggaacgat cggcatcttt       600
     ccgacgtcga gaagctgcac tatttgcgga cgtgcttaga gaaggaggcc gcctcgctca       660
     ttaaaccgct gcctatcgta ggcgaaaact accaacgcgc ttggactcgg cttcaggagt       720
     actacgagaa caagcgcctg ttagttcgct cgtgtttcgc gaatttttcc tcactcggca       780
     agatgaagaa cggttcggcg ggtgagttgc gaaggctcta tctgggagcc accggaacga       840
     ttgacaacct cgagtgcatc ggccgaccaa taactaattg cgaggacctt tttgttcact       900
     ccgtggtcga tcgactcgag ccgagttcgc gtctcgattg ggaggaactg ctccgggatc       960
     gtacggatcc gccgtcgtac gcagagttaa aattatttct sgagcagcgg ttgcgagtgc      1020
     tggaggcagt gcaaccgcca aagccagaga gcagcgtgac gaaggccgct tctggcgacg      1080
     cgaaggcgac acgcgttcac cacgtgaagg gccaagagca gaagcggagc cgttgcccac      1140
     tgtgtaaagc cgagcatttc ctgatgcaat gcgaggcgta ccggaagaag actcctccag      1200
     agcgcatgca gtacgtgcag gaggggagcc tttgtcgcaa ttgcctcggg tcgcatcggg      1260
     cgagcgaatg tccatcaaag agatcgtgcg cggtgtgcgg ggagcgtcat cattcctcgc      1320
     tgcacgatgc ctcccgcgaa gtcgcgctcg cgagcacgtc gcatcacgcc ggccggccgg      1380
     cgcacgagcc ggcgaccgcg ctgctggcta cagctcgtat ccgcgtgatc gaccgcttcg      1440
     gaggggaaca tgcggctcgc gcgctcgtcg atcctggcgc agaaacctct ctcatcaccg      1500
     aggccttggc gcagcgatta agattgccgc gctctcgtgc tgctcacgcg atcttcggtg      1560
     tttgcgaagt acagaccgct gtttcgcggg gaaaggtaaa gctcgccttt acctcgcgcc      1620
     tgggcggacc aacggtgacg atcaaggcgc tcgtggtgcc tcgcctcacc atctacacca      1680
     gcgacggcag tggcagcgcc ggcgactggc cccatctgcg cggactggag ttggccgacc      1740
     ctgactacct agccaatgat cccattgagg tgctgttcgg cgtcggcgcc tgtgctgcta      1800
     ttctccgcga cggtctccga cgtggaggtc cgaaccagcc tataggacaa aggactattt      1860
     taggttggat aatatcgggt gacctcacgg acgaggacaa ggacgggcct cctcgcacga      1920
     gctcgctgca gtgctccgtg ggagacgacc tggcactaag cgtgcgccgt ttctgggagc      1980
     aggaggagct tccgtccgca acgaccattc cacttacccc cgatgagcag gcggcggagg      2040
     accacttcgt caagactcat cgtcgcttgc aggatgggcg gtacgttgtg agccttccgc      2100
     tgattgagcc tctgccggac ttctcgagct ctcgcaccac ggcgcttcgc gtcttaacgc      2160
     acgtcgagag gcgactcaac cgcgacgcga ccatgaggac gatgtacgcc gagttcctgc      2220
     gacagtacga ggatctgcga cacatgtcac tcgctgatcc ctcgcctgat cgcctcgcca      2280
     gtcgaacgtg ctatctccct catcatggcg tgctgcgtgc tgcgagcgcc tccaccaaat      2340
     tgagagtcgt ctttaacggc tcttctagcc tcgcttccgg tgggtcccta aatgagcagt      2400
     ctccttccgg gaccaaacct gctgccagcc ctagcagacg ttctcctccg gtggcgtgcg      2460
     cataagtacg tcatagcctc ggacatcgag aagatgttca ggcagatcca ggttcatcag      2520
     gccgatcgtg acctgcagcg tattctctgg cgtcacaaca ggaccgacga cgtcagagaa      2580
     tatcagctca acacggtcac ctacggtctc gcctgcgctc cgttcttggc catgaggact      2640
     ctcaggcagt tggccgatga cgaggagagc gcttatcccc tcggagcggc gaccctacgg      2700
     cgggacgtct acatggatga cgtcctcacc ggcgccgcca catacaagga agcgaaagag      2760
     atccaacggc agctggcacg catctgctcg gcgggcggat tccccctgaa gaagtggtcg      2820
     gcgaacgatg ccgcccttct ggaggaaatc ccgccagccg accggctgac atcaacctcc      2880
     tctctttcgt ggctacctct cgaaagccat cctactctcg ggttgcaatg gcacccgact      2940
     tcagatcact ttaccttctc atttagtgaa gtttcagaag cagttcccac gaagcgctcc      3000
     gttctttctc agaccgcccg aatgtttgat ccgcttggat ggctggctcc cgccgtggtc      3060
     agagccaaga ttcatatcca gacaacgtgg cttcagggtc ttggctggga cgacccgttg      3120
     gctgacgcag acgccactgc ttggaaggcg tttcagtccg agctccacct gctgcggcgg      3180
     attcgcgttc cgaggtggtt gcggtgctcc tccgatcatg tccagctgga gctccacggg      3240
     tttgcggacg cttccgagcg ggcgtacgcg gcggtcgcct atctttgcgt gcggtctgct      3300
     gaggagagaa ccagctcaat tatcatggcc aagactagag tggcgcctct aaagcaagtc      3360
     tcgctgcctc gtctggagct tgccggtgct gctctgctgg cgcgcctggt ctcgcatgta      3420
     cggtccgcgc tgagtctgca gagcgtgccg gtcttcctct ggtccgactc taccgtggcc      3480
     ttgagttgga tccagggaca cccgtctcgc tggacgacgt acgtggccaa tcgcgtggcg      3540
     gagatccagc gaacggtccc gggggctcat tggcggcatg tgccgggctg cgacaatccg      3600
     gccgactgcg cttccagggg agtgcggccg ggcgagctcg tggctcaccc gctgtggtgg      3660
     tcgggccctg actggctgac gaaggagatg actgagtggc ctccctccgc cttccctgcg      3720
     gaccaggagc tgcccgaggt gcgcattcgg tcccatcacg tggaggtcga tcctgaggag      3780
     ccggcctggg tgacccgatt ctccgggctg aatcggctga tccgcgtcgc tgcctggtgc      3840
     cgacggtggc tgggcggcgt tcggtcggct gttgggggtg gagggcgtcc ctcaacgtgg      3900
     acgagctgga ggctgctcgc ctgtccttga tacggctgac gcagtcggtc tggtgggaaa      3960
     ggcggctggg cgcggtcagg cgtggtcagg cgctgccgag gagaagctct ctggtcaagc      4020
     tgagcccgtt cctggacgat cagggcattc tgcgagtggg cggacgattg aggcactcgc      4080
     tgttgtcata cgacgagaag catcccgtga ttctaccgag gagggctcat ctgacgcggc      4140
     tcgtcatcga ggactgccac cgcgcagcgt tgcacggtgg aactcaggcg accttgggcc      4200
     tgatccgaca gcggtactgg atccctgggg ggagagcggc agttaaggcc gccatccacc      4260
     gttgtctgcc ctgtgtgcga tggcgggcgg caacgccgac gcagagaatg gccgatctcc      4320
     cgcggcctcg cgtagttcca tctcgaccct tcctacacgc aggggtcgac tacgcggggc      4380
     cagtcatgct gcggacaagc cgggggcggg ggcataaggc gtacaaggcc ttcgtggccg      4440
     tgttcgtctg cctgagctct cgcgccgttc atctggaagt cgtttccgac tactcgtcag      4500
     aggcgttcct cgcggccttg aaacgcttca cttctcgtcg aggactgtgc cataccctgt      4560
     attctgactg cggtactaat tttgtaggtg ccgatcgtca attgcgcgac ctcttcgcag      4620
     acagcaccgt ggagggtagg cgagtagcgg acggcttgag caaccaggga atacggtggc      4680
     gctttaatcc acctgcggcg cctcactttg gtggtctctg ggaggctgcc gtcaaatcta      4740
     tgaagcacca cctccggcgg gtgctgggtg agaccactct caccttcgag gagatgacga      4800
     cgcttctcgc gcaggtggag gcctgcatga attcgaggcc gttgcaggcc ctctcggatg      4860
     acccggagga cttagccgct ctcaccccgg gccacttcct cgtgggatcg gccatcaacg      4920
     ccgtgccgga gccatcctta cgggacgaac ccgctggccg cctcggccgg tggcaactag      4980
     tgcagcgtat gcgggatcag ctgtgggata ggtggtcgca agagtacctc cacgctctca      5040
     gccatcgacc aaagtggtgg acgaccaact ccgacatcga agtgggtcgc ctgtgcctac      5100
     tgaggagcga gatcaaccct ccgaccaagt ggcctcttgc gcgggtcatt agcgtgcgtc      5160
     caggcgacga tgggcgagtc cgcgtcgtaa cagtgcgtac ggcgacttcc gagctgactc      5220
     gtcctgtcgc taagctggtg ctcctaccgg tgtcgtcgtc cggcgattgc gaggccggta      5280
     ccaattagtc gttgaccgca tcaacgacgg cgggcggaa                             5319
//
ID   BEL-11_SI-LTR repbase;    DNA;    INV; 553 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 19.02, Created)
DT   21-OCT-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SI_;
KW   BEL-11_SI-I; BEL-11_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-553
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 422-422 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 553 BP; 129 A; 136 C; 150 G; 138 T; 0 other;
     tgttgcggaa cgccgcaatt ttcagcttct ttccgaatta ttgattccaa agccaagaat        60
     gttgcgaagc gctgaaatta ttatttttcg atttcaggcg atcaattctt ggctttggag       120
     tcaacatgtt gttgtttgcc gatcggagcg gagcggtgag ctcggtctgg cgtccgcgtg       180
     atcgcgcgcg tggtcgcgcg atgcgcgctg tagccgacca attgacgttc gatacgcgac       240
     gatctcgcgt attcgaacgg ctaagcccgg cacgacttgt tccctgagaa accgcgaaaa       300
     gtttcacgtg agaccctcgg gaacggatcg tgtcgcaggc tatataggct cccgcaaacg       360
     gcgggagcgc gccttttcgt agtcgaattc cgaggagtaa gcgtatcgtg gtaatagaaa       420
     gcgaatatct cagtgcgaaa taaaagttat atttttcaaa cgctacaagc gcattcacag       480
     aaatttaacg ggcatctcca tcccgccaag ttgcatcggt gctagttcgc gtaccagtgc       540
     cgtgcagcga aca                                                          553
//
ID   BEL-11_SiCu-I repbase;    DNA;    INV; 5864 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5864
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4985-4985 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..5863
FT                 /product="BEL-11_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADKQWSVEELKSEIEMTKGLINLTSEMKSLAFAKLD
FT                 PSFLTGAMTPERQHQQKKASADCAIADRVIGSETEKLLKLEMELEKLTLQQ
FT                 NCDKTTPSVSSGSCEGAKIKKELEYKQLLLTLQNQHEEEREKLEFELAIAA
FT                 SKPETEELKQEIQELKVRLDFLDKSYQRKRRNMEEAGKLDMELLQVNDDDN
FT                 EQQLDEEEEKRLQNFQFPTNANNNVNGSGNSPLSALPPTATPAIAVDKEAM
FT                 MLQLMQSQMTLINKTGRSYGDKKLPEFSGDPKDWSAFKAAYDRTNNKFRFE
FT                 DDENLARLQQALKGEARSAVEHLMANVRNVPKIMLTLEKRFGRAEFVIDYL
FT                 AEKVKACPKPDLTKPKTIVDFGTAVENLVTNVYAYDELDLLSSKHLVAEMV
FT                 EKLPGQLKDKWYSFLYQDTSRRADLRTFYEWMEEPLGVALLQLKPSMPSQN
FT                 NDKSEERSSNRSRRNFGSINMTEGEERSSKSCQVCNGKGHAMDTCWQLKKK
FT                 TVDERWKLAKEARVCFSCLKDSHTTMNCPEKKTCGKDGCQRSHHRLLHSNQ
FT                 RSDKPSPLTKDGVVKQQQSTVDGSQSDGTGSAGCVQGTDGPLPIVPVRVKG
FT                 PDGVRVIHAMIDSGATRTLITESLADDLGLKGPSEEYRYRTMSGEIVSNTK
FT                 SKRVSLAVSGRYRNAKLFPLTDVVTVERIGVAPYSIDVEKAKLNWPHLRRY
FT                 KGSSLTKVVPDLVIGGDHGYLTMHRDLLYSTPDKPVAMRTVLGWILLGKLK
FT                 EAGQIGTGCHVGGLQLDATLDQLIEESFRLNDYAARDYDTVSPSILDKKAL
FT                 HIMEATTRQREDGRWETGLLWKNHRRLPPSSYDDAFSRLLITERKMGKDAE
FT                 FATTYRQKMEEYIAKDYIRKLPAEEIAVLKEKVFYIPHFGVTNPNKPGKLR
FT                 LVFDCAAKVKGECLNDFLLTGPDLIRPLTGILWNFRRHPIVICGDIEDMFH
FT                 RVFIMEPDRIAQRFLWRDGDNSKEPDVYEMKVMLFGATCSPSCAAFVKNKN
FT                 AELFHDQYPQAVAAIKDDMYVDDNLTGAATVTEAIKLRRDITEINAKGGFC
FT                 IKKWISNSQEVMESIPEDLRLASCPSLTGRGIGETERVLGLYWDPTEDVFT
FT                 FRLNFNKVKPDVLAGRRPTKREMCSLIMSLFDPLGFLGCYKIKGMILFQST
FT                 WRSGVGWDDEIAEDVYEDWKNWIQKLPLLETVKIPRCYSLSLGKATTQLHV
FT                 LVDASAEATSAVCYLRMEVNGRVEVSFVASKVHVAPNKKTTIPRMELCAAL
FT                 AGSKLATRVQKDLNVSISQRFFHSDSSTVLSWIKSEAGRYKEYVANRITRI
FT                 QELTDPSEWRWVSTAENVADDATRLRSKLDLSSDCRWLRGPGFLLLSEEKW
FT                 PQRRQEEDEEGTIGACVGAESVCEAATVFGGRAVEVVPETSRFSKYYRLLR
FT                 AAATVVAASKMFLWKIGKGSSSSSWTKGATKGSWESRISPDDFQVAENLLV
FT                 RAAQEDSKLDLFGHANRKLKLVRDQYGVFRVAGRIPDDGVISEAVRRPALL
FT                 PARNQLVDLLVDSEHVKNGHCGRNTVYNSLRQKFWILDGRHAVRRSWTRCM
FT                 KCRLLRAKPVPPEMGVLPKCRVAAGSPPFTYTGTDLFGPIEVTVGRRHEKR
FT                 WGLLMTCMVTRGVHLEVISGLSLDETMMGLCRFIDTRGLPCHFYSDNGTNY
FT                 QAAAKELAKTEKFHGSTWHFIPPASPHMGGAWETMVKQVKRVLAKILEEKF
FT                 PKDQALLTALKAIENILNSRPLSYVSGDAGDLEALTPNHFLRGIGIASGGR
FT                 SGEAVVRGSESVSGDICGDKERWGKQWEKAQLLAQKFWDRWSKEVLPNLLR
FT                 RDKWNVMSEPVAVGDVVIILDDQKPRSEWKKALVSRVFPGADKEVRVAEVI
FT                 VRSWKTKTVSTYRRAVTKLCRTGLRCSDLGTHGVQIRGPE"
XX
SQ   Sequence 5864 BP; 1667 A; 1350 C; 1586 G; 1261 T; 0 other;
     ttgtgccgaa acccgggaaa ctcttcggaa cctgttcgaa aaggacaaca acgttaattt        60
     taaaaaaccg taaaaagttt aattgtgcct ttatttatct catctgtgaa gtattcgtga       120
     catcatggca gacaagcagt ggtccgtgga ggagctgaag agcgagatcg agatgacaaa       180
     aggcctgatc aacctaacta gtgaaatgaa gagcttggcg tttgccaagt tggatccgtc       240
     attccttacc ggtgcgatga cgcctgaacg ccaacaccaa cagaagaaag catcagcgga       300
     ctgtgccata gcggatcgtg tcatcggatc ggaaacagag aaactgttga aactggaaat       360
     ggagctcgag aagctgacac tgcagcagaa ctgtgacaag accaccccct ccgtctcctc       420
     tggaagctgt gaaggtgcca aaattaaaaa ggagctcgaa tataagcaac ttttgcttac       480
     cctccaaaac caacacgaag aagagaggga aaagctggaa tttgagctgg ccattgcagc       540
     ttccaagcca gaaactgaag agctcaagca ggagatccaa gaactgaagg tcaggttgga       600
     ttttctggac aaatcctacc aaaggaaaag gaggaacatg gaggaggcgg ggaaactgga       660
     tatggagctt ctacaagtta atgatgacga caacgagcag cagcttgacg aagaagaaga       720
     aaagcggttg cagaatttcc agttccctac aaacgccaac aacaatgtca acggcagtgg       780
     aaacagtcct ctatctgctt taccaccgac agcaacgcca gccatcgccg tcgataaaga       840
     agcaatgatg cttcagctaa tgcagtctca gatgaccctc atcaacaaaa ctggacgatc       900
     ctacggggat aaaaaattgc ctgaattttc tggagacccg aaggactgga gcgcatttaa       960
     agcagcctac gaccgaacca acaacaaatt ccggttcgag gatgatgaga acctagcaag      1020
     actacaacaa gcattgaaag gagaagcaag gtcagcggtt gagcatctta tggcaaatgt      1080
     gagaaacgtc cccaaaataa tgctgactct ggaaaagcgc tttggacgag cagaatttgt      1140
     gattgattac cttgccgaga aggtaaaagc ctgccccaaa cctgacctta ccaaaccaaa      1200
     gacaattgtg gattttggaa ctgctgttga gaacctcgta acaaatgtct acgcttacga      1260
     tgagctggac ctgctttcta gcaagcacct tgtcgccgaa atggtcgaaa aattgcctgg      1320
     tcaactaaag gataagtggt acagcttcct gtatcaagac accagcagaa gagcagacct      1380
     ccggaccttt tacgagtgga tggaggagcc tttgggtgtg gcactacttc aactcaagcc      1440
     atcaatgcca tctcaaaaca atgacaagtc agaagagagg agtagcaatc gctccaggag      1500
     gaactttgga tcaatcaaca tgacggaagg tgaagaacgc tccagtaaat cctgccaagt      1560
     ttgtaatggc aaaggtcacg ccatggacac ctgctggcag cttaagaaga aaacagtgga      1620
     cgaacgctgg aaattggcca aagaagcaag agtttgtttt tcctgcctga aagacagcca      1680
     cacgaccatg aactgccctg agaagaagac ctgtggaaaa gatggatgtc agcgaagtca      1740
     tcatcgcctc cttcactcca atcagcgaag tgacaagccg tcaccattaa caaaagacgg      1800
     agtagtaaag caacaacagt caacagtgga tggaagtcaa agcgatggaa ccggatcagc      1860
     tggatgtgtt caagggacgg acggtcccct tccaatcgtt cccgtccgtg tcaagggacc      1920
     tgacggagtg agagtcattc acgccatgat tgactccgga gcaacgcgca ctctcatcac      1980
     ggagtcatta gctgatgacc ttggactgaa agggccttca gaagagtacc gctaccgcac      2040
     catgtcgggc gagatagtgt ccaacaccaa gtcgaagcgt gttagccttg ccgtttcagg      2100
     acgctatcgc aacgccaagt tgtttccatt gacggatgtc gtgactgtgg agaggattgg      2160
     agtagcgcca tactccattg atgtggaaaa ggccaagctg aattggccac atctccgccg      2220
     ctataaaggg tcatcattga cgaaagtggt tcctgatctg gtaattggag gagaccatgg      2280
     ttatctaacc atgcaccgtg acctgctgta ttcaacacca gacaagccag ttgctatgag      2340
     gaccgtcctt ggatggattt tgctgggaaa attgaaagaa gcaggacaaa tcggaaccgg      2400
     atgtcacgtc ggtgggctgc agcttgatgc cactctggac cagctgattg aagagtcatt      2460
     tcgcctaaat gactacgcag cgagagacta tgacacggtt tctccctcca ttctcgacaa      2520
     gaaagctcta catattatgg aggcaactac acggcaacgg gaagatggaa gatgggagac      2580
     tggactcttg tggaagaacc accgccgcct tcctcccagc agttacgatg acgccttttc      2640
     tagactgctc atcaccgaga ggaagatggg aaaagacgct gaatttgcca cgacgtaccg      2700
     ccagaagatg gaggagtaca tagccaagga ctacatccgg aagttgccag cggaggaaat      2760
     tgcggttctg aaagaaaaag tcttttacat tccccatttt ggggtcacca acccgaacaa      2820
     gcctggaaaa ctacgccttg ttttcgactg tgctgctaag gtgaaaggag aatgcctcaa      2880
     cgacttcctc ctcaccggac ccgatctcat tcggccttta acggggattt tgtggaactt      2940
     tagacgccac ccaattgtga tctgtggaga catagaggat atgtttcaca gagtcttcat      3000
     catggaaccc gacaggatag cgcaaagatt tctctggaga gacggtgaca acagcaagga      3060
     gcccgacgtg tatgagatga aggtgatgct gttcggagca acttgctccc cttcctgtgc      3120
     cgcgttcgtg aaaaataaaa acgcagaact gttccatgac cagtaccctc aagcagtagc      3180
     tgccattaag gacgacatgt atgttgacga caatttgacg ggtgcagcaa ctgtcacaga      3240
     agccattaaa ttgagacgag acatcaccga aatcaacgct aagggaggat tctgcatcaa      3300
     aaagtggatt tcgaacagtc aggaggtaat ggagagcatt ccggaggact tacgactagc      3360
     ttcctgccca tctttgactg gaagaggaat tggcgagacg gaaagagttc tagggctata      3420
     ctgggatccc acggaagacg tgttcacctt ccgcttgaat ttcaacaaag tcaagcctga      3480
     tgtccttgcc ggacggagac ctacaaaacg agaaatgtgt agtctcatca tgtcactttt      3540
     tgaccctctc ggatttcttg gctgctacaa gatcaaagga atgatcttat tccagtcaac      3600
     ctggcgttct ggagttggat gggacgacga gatagcagag gacgtctatg aggactggaa      3660
     aaattggatc cagaaactgc cactcctgga gactgtaaag attccaagat gttacagcct      3720
     ttccctgggc aaagcaacaa cccagctgca tgtcctggtg gacgcttctg ccgaggcaac      3780
     atcagctgtt tgctatttgc ggatggaggt gaatggtcga gtcgaggttt cattcgtggc      3840
     ctccaaagtt cacgttgcgc caaacaagaa gacgacaatt ccgaggatgg aactctgtgc      3900
     agccttagca gggagcaagc tggctactag agtgcagaag gatttgaatg tctccatctc      3960
     acagcggttt ttccacagtg attcatcaac cgtgcttagt tggatcaagt ctgaggctgg      4020
     acgctacaag gaatatgtag ccaatcgaat caccaggatt caagagttga cggaccccag      4080
     tgagtggaga tgggtgagca cggccgaaaa cgtagcggac gatgccacac gcttgaggag      4140
     caaactggac ttgagcagcg attgtcggtg gttacggggg ccgggttttc tgctgttgag      4200
     tgaagaaaaa tggccacaac gacgacaaga agaagacgaa gaagggacga taggtgcctg      4260
     tgtcggagca gagagcgtct gtgaagccgc caccgtcttt ggaggacgag cagttgaagt      4320
     tgtaccggag actagccgtt tctcaaaata ttatcgcctt ttgagagccg ccgccaccgt      4380
     tgttgccgca tcaaaaatgt tcctgtggaa aattggaaaa ggatcgtcat catcatcatg      4440
     gaccaaagga gcgacgaaag gctcttggga atccagaatc tcgccagatg attttcaagt      4500
     cgctgaaaac ttgcttgttc gtgctgccca agaagacagc aagctggatt tgtttggaca      4560
     tgctaaccgg aagttgaagc tcgtccgtga ccaatatggc gtctttcgag tggcaggaag      4620
     aattccggat gatggtgtta tttcggaagc agtgagaaga ccagctctac ttccagccag      4680
     gaatcaactt gtggatttgc tcgtggacag cgagcacgta aaaaatggac actgtgggag      4740
     gaatacagtg tacaattcgc tgcgccaaaa gttctggatc ctggacggac gacacgctgt      4800
     gaggaggagc tggacacgct gcatgaaatg ccgcctcctc agagccaaac cggtgccacc      4860
     ggaaatggga gtcttgccaa aatgtcgagt tgcagccggg agcccaccgt tcacctacac      4920
     cggaactgac ttgtttgggc caatcgaggt tacagtggga agacgacacg agaagcgctg      4980
     gggcctgctg atgacctgta tggtgacacg aggagtgcat ttggaggtca tctctggtct      5040
     cagtttggat gagaccatga tgggattgtg tcggtttatt gacactcgcg gactaccttg      5100
     tcacttttat agtgacaacg gtactaatta ccaagcagca gcaaaggaac tcgccaagac      5160
     ggagaagttc catggctcta cgtggcattt tatcccacca gcttcaccgc acatgggagg      5220
     agcctgggag accatggtca agcaagtgaa gcgggtgctg gccaagatac tggaagaaaa      5280
     gttccccaag gatcaagcac ttctaactgc cctgaaggcc attgagaaca ttctcaattc      5340
     tcgtccgttg tcgtacgtgt ctggcgatgc tggtgacctt gaagccctca caccaaacca      5400
     tttcctccgt ggaattggca ttgcctctgg aggacgttct ggagaagctg tggtgcgagg      5460
     atccgagtcg gtttccggag acatctgtgg ggacaaggag cgctggggaa agcaatggga      5520
     gaaggcgcaa ctgttggcgc agaaattctg ggatcgatgg agtaaggagg tactgccaaa      5580
     cctcctccga agagacaagt ggaacgtgat gtccgagcct gtcgccgttg gagacgtcgt      5640
     catcattctt gatgatcaga agccgaggag cgagtggaag aaggcgctgg tctcaagggt      5700
     ctttcctgga gctgacaagg aggtgagggt cgcagaagtc atcgtcaggt cgtggaagac      5760
     caagactgtt tccacgtacc gtcgcgccgt gactaagtta tgccgaactg gtcttcgttg      5820
     tagtgatttg ggcactcacg gtgtccaaat cagggggccg gaaa                       5864
//
ID   BEL-11_SiCu-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-597
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5008-5008 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 597 BP; 189 A; 108 C; 131 G; 169 T; 0 other;
     tggaaggaat ttgtggggca acgcaagaca gcgttgctcc aacttgcagt aagaaaaccg        60
     ggacgagacg aactggcggc ggtgcggtct gattgcatgc aaacgggaag aagacggagg       120
     aggaggcagc gagaacaacg agtcagtagt caacagtcag ccaagagaca agaagaacgg       180
     cagcagcaga ataataattt ttttaattat tgtaattaat cttttcttgc caatattaca       240
     ggcgttagcc taatagttac ttaatcatta gtcttgtcca ttggcgttag ccaaataata       300
     atattcagtc taatttgtca tttttgtcgt ttgttaattg tcatttttgt gtggttgttt       360
     tttgttaata aatgaccata agtaattaat taattaaaac tcctttcgtc ttctgtagtc       420
     ggttattgtg ctcaagtaga agcacgaaca gtagttcagc cagcatcagt aaatagggcg       480
     ttgataggga aaatttaatt actaattaca ccaaaagtgc acgccacctc cctcgaacat       540
     tttaaccgaa gtacgagcat ctaacaaaag ggcctagata gttcgaaaac cttccca          597
//
ID   BEL-11_SpEx-I repbase;    DNA;    INV; 6214 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6214
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6892-6892 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           866..6178
FT                 /product="BEL-11_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSEERELVKKRGSFKGRLTAFISYLDVSCDKQLTSCE
FT                 VKELQLRMGRIESLYEQYDEVQLRLECMVEDVKTQFSERAEFESQYYKALS
FT                 RSQELLSKYTNDDKESVSSDKCTRISQRKPVKLPTIQLPKFDGCYSHWLEF
FT                 RDTFTSLIHCNDDIDQVNKFHYLRASLEGSAAVVIHAIEFSASNYDIAWKL
FT                 VCERYDNKRLLIHNHVSSLFNINAISKESSVALKGLIDQLNKNLRALISLG
FT                 EPVKYWDTLLIYLVTRKLDNVTYREWEQHKGRLDKETIITFDAFMQFLRDR
FT                 AVLLETLDLKFNTINSTQNKPSSHSNKIKSTSMVVSQNSPSSSTDINKLCP
FT                 HCKGDHVLSSCSQFLALSIDARLKLIPNYKVCYNCFHTGHFANRCRKPGCK
FT                 VCKRRHNTLIHSENKGASTSRDNNVAHSSTPHSIRTSSPTDAVARTNVTAN
FT                 NLTLAADVVGSSCGERKQHCGGVLLSTALIKLCDQYDRQHIVRALLDSGST
FT                 SCFMTEHLCKRLNLDACQVNGSVYGINNVSSRVGKMCHIKMTSLDNSYSSK
FT                 FYCFVLPSLTGVVPCREVDISDLNIPGDICLADPTFYKPSEVDILIGADLF
FT                 WDLVGSQTIRLGVGKPVLCQTVLGWIVSGPVTYRNGSKSADIVCNFTQSDS
FT                 SSVDNFNKIHTDLVKFWNLEEVNSQSSNYLPEEKLCEEHFVKNTTRLDSGH
FT                 FCVRIPLKQSPSVLGESFQRASKCLSSLERRLKSKPEFSKLYCDFMSEYEA
FT                 LGHMTETRHCDSPNGYFIPHHGVLRESSTTTKLRVVFNASCVTSSGVSFND
FT                 LQMVGPTVQDDLLSILLRFRQHQFVLSADVAKMYRCILVHPSDRYLQQILW
FT                 RDSDSGPVKVFKLNTVTYGTASAPFLATRCLKQVGIDYRNXAIKTSASAVG
FT                 EYSNKKNRIAEIIIHDFYVDDLLTGADDIHELEFIRAEVTNALASACMPLR
FT                 KWRSNVPELVHGDSQSSLDLDVGSNKPNKLLGLDWFATSDELGFSSSPLPS
FT                 KDFITKRDILXAIARIFDPLGLISPCVVTMKIFLQRMWSDKLSWDEPLTPA
FT                 LHSSWNTLVKTLPLINSFRVPRPVICRFNTMLELHVFTDASERAYGACVYV
FT                 RSVNNEGEYMVRLLVAKSRVAPIKPTTIPRLELCGAVVGARLCEKVVSSLR
FT                 VNISHVYCWTDSTVVLGWLKMLSSKLQPFVRNRVAEVLDKTGHCTWRHIPT
FT                 DKNPADLLSRGMDISVLQATDLWWSGPSFLKLPQSHWPSQHQSLELDQLPE
FT                 TRPSVSLRADVTSHINYNFIDFSRYSSYLRLIRSVAYVLRFVQLCRKVKLP
FT                 TKFLSHAELQNALNIIIIASQMESLPEYRLLINNQKLPSKSSLIKFNVFID
FT                 ENKIMRVGGRLGNSTFPFNKKHPIILQSTHKFTKLLFEYEHVKLMHAGPQL
FT                 LLASIRESYWPIGGRSLAKGCYRKCLRCSRLSGKTLTPLMGNLPQQRILPG
FT                 GHPFECTGVDYAGPIMAVSRQGRGCRLVKVYIAIFVCFTTKAIHLELVSDL
FT                 TSDKFLLALFRFISRRGKPNDIYSDNGTTFVGACNELSSFLKANCDSLGEQ
FT                 LANKGIKFNFIPAYTPHFGGLWEAGVKSTKFHLRRVLGNCHLTFEELNTTL
FT                 VQIEAILNSRPLTPLSSDPADCTPLTPGHFLIGRPLTSLPQKDLQDYSTSS
FT                 LRRFQRVEQLRQHFWSRWSKEYVSELQQRMKWRSCKDTLKLGTMVVIKEDH
FT                 LPPLKWRLGRIVAIHPGSDGIARVADIKTSAGVIRRAFNRICPLPVENASG
FT                 "
XX
SQ   Sequence 6214 BP; 1753 A; 1200 C; 1320 G; 1938 T; 3 other;
     taatttggtc ccaccgagcc ggatatatct ggattattga agaacgcaat aattatcgag        60
     gaaattgagg attattgtgg attttaccaa agaaggcgat acgacggtca aatgtggtag       120
     cgtgaacaag ggactttaac ttaaaacggt gttaagaata tttaaacata ataattaata       180
     tcacccaaca ctcaatcagg tagtatatta atataattaa ggattaaacc aggttagtgt       240
     tgtttatttt cttaaacatt cttattatta gttaacttaa ccatttgcat tgtgaatagt       300
     aatttttgct agttatcaaa attatacgta tcctaattaa agatacagta gtatatagtg       360
     tatatatagt caatacatac tacatttata atttgtactg ctgcattata gcttattagc       420
     tatataagta ttattcacat cgttaattta gtgcgaaggt agattgttaa ctcgttgtta       480
     agttaatgtt aaagtgtgtc cttgaaacat tagtgaccgt atgtgtattc aattaattat       540
     taatttagtt ttagcctctt aaattattga cgattaggta ttatttttct ttgttataag       600
     tatattgtgg aatctgtact gaaataaaag gcaaccattc aaatcatcat ttatatttac       660
     gtaatttaca gtactgttgt tgactattta cattgttata cataaaaact atttacaatt       720
     ggtacataaa aactatttac aattatttta cattaaaaca ttgtttctgt catataggta       780
     cagacttatc tttaaaattg tattgtaaaa ataaatctaa gtacttcttc aacaaattcc       840
     aggtcgattg cactcggttc ccaatatgtc cgaagaaaga gaactagtta agaagcgagg       900
     aagctttaag ggtcgtttga ctgcctttat cagttacctt gatgtatctt gtgataagca       960
     gttaactagt tgtgaggtaa aggagttgca attgcgtatg ggaagaatcg aaagtttgta      1020
     tgagcagtac gatgaggttc agttgcgact agaatgcatg gtagaagacg tcaaaacaca      1080
     attttctgag cgtgccgagt ttgaatctca atattacaag gcattatcta gatcgcagga      1140
     attgttaagt aagtacacta atgatgacaa ggagtccgta agtagtgata aatgtactcg      1200
     gattagtcaa cgtaagcctg ttaagttgcc cactatacag ctaccgaagt tcgatgggtg      1260
     ctatagtcat tggctagagt ttcgtgacac ttttactagc ctcattcact gtaatgatga      1320
     catcgaccag gtaaataaat tccactattt gcgagcgtcg ctggagggat ctgctgctgt      1380
     tgtgatccat gccattgagt tctccgcaag caattacgat atagcttgga agcttgtttg      1440
     tgagcgttac gataataaac gtttattaat acataatcat gtctcatcct tatttaatat      1500
     aaacgccatt tctaaggaat cttccgttgc gttaaaagga ttgattgatc aactcaataa      1560
     aaatcttcgt gctttaatat ctttaggtga gcctgtgaag tattgggaca ctttgttaat      1620
     atacttagtc actcgtaagt tagacaatgt gacgtatcgc gagtgggagc agcacaaagg      1680
     tcggttggat aaggaaacca tcataacatt tgatgcattc atgcagtttc ttcgtgatcg      1740
     cgctgtgttg ttagaaactt tagatttaaa gtttaatact attaactcca ctcaaaataa      1800
     acctagttcc cattctaata aaataaaatc tacgagcatg gtagtatcac agaattctcc      1860
     tagttcaagc actgatatta ataaattatg tccgcactgt aaaggcgatc acgttttgtc      1920
     tagctgctcg cagtttcttg cactcagtat agacgcccgt ctcaagttaa tacccaatta      1980
     taaggtgtgc tacaactgtt ttcatacagg tcactttgct aatcgttgta ggaagccggg      2040
     atgcaaggtt tgtaagcgcc gacataatac gttgatacat tccgagaaca aaggtgcttc      2100
     aacgtcgcgc gataacaacg tagcacacag tagcacgcct cattccataa gaacgtcatc      2160
     gcccactgac gccgtggctc gcactaatgt gactgctaat aatttaactt tagccgcgga      2220
     cgtcgtcggt tcatcttgtg gcgagcgtaa acaacactgt ggtggtgttt tattgtctac      2280
     cgctcttatc aagttatgtg atcaatatga tcgtcagcac atagtgcgag ccctgcttga      2340
     tagtggtagc acttcatgtt tcatgacaga acatttatgt aaacggctta atctagatgc      2400
     ctgccaggta aatggatcgg tttacggcat aaataatgta agctcgcgcg taggtaaaat      2460
     gtgtcatatt aaaatgacgt cattagacaa tagttatagt tctaagtttt attgtttcgt      2520
     tttgccatct ttaacgggtg tagtgccgtg tcgcgaagtc gacatttctg atttgaacat      2580
     tccaggcgat atttgtttag ccgaccccac tttttataaa ccttcagaag tcgatatttt      2640
     aatcggtgct gatctcttct gggacttggt cggttcgcaa acaattaggc taggtgtagg      2700
     taagccagta ttatgtcaga cagtattagg ctggatagtt tctggtcctg ttacctatcg      2760
     caacggtagt aagtcagctg acatagtttg caattttacc caatccgatt cctctagcgt      2820
     tgataatttt aataaaattc acacagattt agttaaattt tggaatctgg aagaggtaaa      2880
     ctcacaatcc tccaattatt tacccgagga aaaattatgt gaggagcatt tcgttaagaa      2940
     tacgacacgt ttagatagcg gtcatttttg tgttcgtatt cctttaaaac aaagtccttc      3000
     tgttttgggt gagtcattcc aaagagcttc gaaatgtttg tccagtttgg aacgcagact      3060
     gaagtcgaag cctgagttca gtaagctata ttgcgacttc atgtctgagt acgaggcatt      3120
     aggacatatg actgagacta ggcattgtga cagtcccaat ggatatttta taccacacca      3180
     tggggtactg cgtgaaagta gcactacgac taagttacgc gtagttttta atgctagttg      3240
     tgttacttcc tcaggagttt cttttaatga tctacagatg gtaggtccga cggtgcagga      3300
     cgatttgtta tctatacttc ttcggtttcg gcaacatcag tttgttttat cggccgacgt      3360
     cgcgaagatg tatagatgta tactcgtcca cccatctgat agatacctgc agcaaattct      3420
     ctggcgtgat agtgactctg gtcctgttaa ggttttcaag ctcaataccg tgacatatgg      3480
     tacagctagt gcaccatttc tcgccacgcg ttgtctgaaa caggttggaa tagactatcg      3540
     aaacgmtgcc attaaaacmt ctgccagtgc tgtaggtgaa tactccaata aaaaaaatag      3600
     gatagctgaa atcatcatcc atgattttta cgttgacgac ctattgactg gagctgatga      3660
     tattcatgag cttgagttta tacgcgcaga ggtcaccaat gcactcgcgt cagcttgcat      3720
     gccgcttaga aagtggaggt ccaacgtacc tgaattagtt cacggggatt ctcagtcgtc      3780
     attagattta gatgtaggtt ctaataaacc taacaaattg ttaggactcg actggtttgc      3840
     tacctccgat gagttaggat tttcaagttc tccactaccc tctaaggatt ttataactaa      3900
     gcgcgacata cttkctgcca ttgcacgcat ctttgatccc ctagggctaa tatctccttg      3960
     cgtagtcacc atgaaaatat ttttacagag aatgtggtca gataaactat catgggatga      4020
     gccattaact cctgcattac attccagttg gaacacgttg gtgaagacat taccacttat      4080
     caatagtttc cgtgttccac gacctgttat ttgtcgcttt aatacgatgc tagaactgca      4140
     tgtattcact gacgcatctg aacgtgcgta tggtgcgtgc gtatatgtac gcagcgtcaa      4200
     taatgagggc gaatacatgg tgcgtctgct agtcgctaaa agtcgagtgg cgccgattaa      4260
     gccaaccact attccaagat tggaattatg tggtgctgtt gtcggagctc gtttgtgtga      4320
     gaaagtcgtg agctcactgc gtgtaaatat cagtcacgtc tattgctgga ccgattccac      4380
     cgttgtgttg ggatggttga agatgttgtc ttctaagctt cagccattcg tacgcaatcg      4440
     cgttgctgaa gtcttagaca agacggggca ctgtacttgg cgacacatcc cgaccgacaa      4500
     gaaccctgca gacctactat ctcgtggcat ggatattagt gttctacaag caacggactt      4560
     gtggtggagt ggtcccagct tcttgaagct tccgcagtct cactggcctt ctcagcacca      4620
     atcattagag ttagatcagc tgcctgaaac tcgacctagc gtatcattac gtgctgacgt      4680
     tactagtcat attaattata attttataga ttttagtcgg tattctagtt atttaaggct      4740
     tatccgtagc gtagcgtacg ttttaagatt tgtacaatta tgtagaaagg ttaagctacc      4800
     tactaaattt ctatcgcacg cggagttgca gaatgcatta aatattatta taattgcaag      4860
     ccaaatggaa tccttacctg aataccgatt gcttattaac aatcaaaagt tgccttcaaa      4920
     aagctcccta attaaattta atgtatttat tgatgaaaac aaaataatgc gtgttggagg      4980
     tcgcttaggc aattctacat ttccatttaa taaaaaacat cctattattt tacagtccac      5040
     tcacaaattc acgaagttat tatttgaata tgaacatgtt aagttgatgc atgcaggccc      5100
     acagttgcta ttggcttcca taagagagtc ctattggcct attggcggac gaagcttagc      5160
     aaaaggttgt tatcgtaagt gcttgcggtg ttcacgtttg tcgggtaaaa ccctcacacc      5220
     tttgatgggc aatttgccgc agcagcgcat ccttccaggt ggccatccat ttgagtgcac      5280
     tggtgtggac tatgccggtc ctatcatggc tgttagtagg caaggtcgcg gatgtaggct      5340
     agtaaaagtg tatatagcaa tctttgtgtg ttttaccacc aaggctattc atttggagct      5400
     ggtgagtgac ttgactagtg acaagttttt gctagcatta tttcggttca tctcgcgaag      5460
     ggggaaaccc aacgacatct actcagataa cggtactacc ttcgtcggtg catgcaacga      5520
     actttcgagt tttctcaagg ctaattgtga ttccctaggc gaacaactgg ctaacaaagg      5580
     gatcaagttt aattttattc ctgcgtatac acctcatttc ggcggacttt gggaagcggg      5640
     tgttaagtcg acaaaatttc accttaggcg agtgttggga aattgtcacc taacttttga      5700
     agaacttaac accactctag ttcagattga ggcaatatta aattcacgcc cactgacacc      5760
     gttatcgtcc gatccagcag attgcacccc attgaccccg ggtcattttc tcattggccg      5820
     gcctctcact tcacttcccc agaaagatct ccaggattac tccacatctt ctttgagacg      5880
     cttccaacgt gttgagcagc tgcggcagca tttttggtct cgttggagca aggagtatgt      5940
     gtctgagctg caacagagaa tgaagtggcg cagttgcaag gatacgctca agctgggtac      6000
     catggtggtc atcaaggagg atcacttacc gcctcttaaa tggagattgg ggagaatcgt      6060
     cgccattcat ccagggtctg atggaatcgc tagagtagca gacatcaaga catctgctgg      6120
     ggtgatacga agagccttca acagaatctg tccactgccc gttgagaatg catctggttg      6180
     aaagtgcatc agcacctttc aacgtccggg ggca                                  6214
//
ID   BEL-11_SpEx-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-205
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6919-6919 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 205 BP; 52 A; 44 C; 36 G; 70 T; 3 other;
     tgttcgagcg cagcgcctgc actcttatta ggagcaactc aacgcgtcct tacaattagg        60
     tgtcatcagt ttaactgtwt atgtatcatt gtccttgact tttgaaagtc attccgccac       120
     aatmmttgta cgtgtcaaga ggcattatat attattgaat acacatttat tgagtttcct       180
     ttggaatccc tgaaattcct gcaca                                             205
//
ID   BEL-11_TrNi-I repbase;    DNA;    INV; 5904 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5904
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1018-1018 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           743..5878
FT                 /product="BEL-11_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADILIRRRGSMKAKLTNFSKYLSVLESNDELSDLQV
FT                 LDLESRLSKFEKLYGEFDTLQTEIELLSDNPDDAHADRFKFEEMYHNLIAT
FT                 ARKVITTEQGQRRQEQTSAGSVSGSEVTGGTRNFIRLPKIDLPRFDGSYQC
FT                 WLEYRDTFLSLIHNNNNIDNISKFHYLRASLKGQAGEIIKNIDFKQENYSI
FT                 AWKLLCERYDNSRLLINNHVKALFNAEPIVSETSAALRRLVDVTNKNIRAL
FT                 TLLNEPTRDTLIIYLMSSKLDATTSRDWEEHRSTLGNSPTLLQFSTFMNNK
FT                 ADLLETLEENNKFDNIQPPNSVKSKSFIITSQKQETKGIEKDKNKIICPLC
FT                 SQTHYLYSCVEFKKLTIEDRVQKAKEFKVCLNCLRGGHIEKRCRFTRCKYC
FT                 KNRHNTLLHLDQPETQVQDPMPSVSSSNVSFSADIQPTSQIHVLLSTAMVR
FT                 VVNNKGKRCNARILLDSGSTANFITEKLSRSLGLSRVGTSSRVTGINSLTS
FT                 NSTHSCNLTIESTYEHYQFNITCFILPEITRRLPASYINTENIPIPSGLFL
FT                 ADPSFNTPSDIDILLGAELFWDVIQANHISLGKNLPKLCESKLGWLISGTV
FT                 PASQHKQTHVCNFSSTTSPDLNKFWELDTISPKHCLSVEERACEESFKLNT
FT                 IRGSNGQFIVTMPLKEDPSVLGDSYAAAKRRFLSLEKRFQRDPIYKSMYTD
FT                 FMNEYETLGHMTEDTNLPANNKNVSYFMPHHGVLRESSKTTKLRTVFDASA
FT                 KSSSGLSLNDIQFVGPTVQNDLLSILMRFRQHKYVISGDIEKMYRAVELNP
FT                 SQRSLQRILFRKGPSEPIKSYTLNTVTYGTASAPYLATKCLVSLAEDTDNQ
FT                 QVKSSIQRDFYVDDLLCGTDTLEGAIELCQNIKSILNSANFNLRKFQSNSA
FT                 LILKKIVDVNDDTCLDLDLSNNCTSKTLGLLWNCKLDILSFSINIDTHKTT
FT                 KRNILSVISQIFDPLGLIGPCVVEAKIIMQKLWVNKCDWDDKVPQDIADQW
FT                 SKFVEALKHLNSLNIPRWVICENCKINEIHIFTDSSEKAYGACVYIRSIDS
FT                 SNAVTVRLLASKNRVAPVKPTTMPRLELCGALVGARLCTKVKESLTISVSR
FT                 CVFWCDSTIVLSWLSAPSTQLKPFVRHRVNEIQETTLGSLWNYVPTRDNPA
FT                 DLVSRGVKADHISDSSLWWAGPSFLLQDESLWPKPPNDIAKQDLPELTCYV
FT                 TQSNNSDIQHQTLIQKLIHKYSDFNRLQRVVAYIKRYIYNLKNKNSKLVGW
FT                 LSNQEIQSSLKCILLNAQLEIFPDEYSTLKLGKSLLHKNRLISLSPFLDSD
FT                 GIIRVGGRLNNSPYDYNVKHPILLCSKHHITKILFQAVHKRLLHAGPQLLL
FT                 ANIRQNYWPLGGRNLSRFTVQKCVVCFRYKAQNVQPIMGQLPSSRSNLEFP
FT                 FLNSSVDYAGPILIADRKGRGCKLVKSYICIFVCLAIKAVHLELVTDLTKE
FT                 AYVAALKRFIARRGKPRSILSDNGTTFVGSDNQLRAFLQNSNLSYDVAQEG
FT                 IEFNFVPAYSPHFNGVAEAAVRSTKHHLKRLLTLTHFTYEEMATCLTQIEA
FT                 ILNSRPLTPCSPDPLDFCALTPSHFLIGRSLTSVPHPQMTDSGNISRLERF
FT                 QRVEYIKQHFWKRFNTEYIYLLQQKTKWSTTTGDIKVGSLVLVKDKALPPL
FT                 CWLLGRVVQTYPGSDGVARVAELKTKKGTLRRAFNNICPLPLS"
XX
SQ   Sequence 5904 BP; 1821 A; 1206 C; 1177 G; 1700 T; 0 other;
     ttggtccttc caccggtaaa gaagaagcgt tgcaataact tcaagtaata agcggcggag        60
     ccataaccac gtgcgcgtct attgtgtcgt ggcatcattt cgtcgagcga agattgaaca       120
     actctccact catcactgca aacacgtgcg ccgatctatt gcgccgtggc attatcattg       180
     tcggtgacga gtgaaatctt gaaaattgaa cgagcctcca gtgaagacac gtgcgctgat       240
     acatcgcggc gtggcatcat tcctggcaca acacaacccg tgaagatctg aagagaggac       300
     acaacgtgcc gccgctctgg ggccgctgca tcgctgctcg agatagtctg taaaaacacg       360
     gacgtgttgt gagttcgttc cattttttcc ttcattcaca ccttgcatta attgcacttt       420
     tcctttaaat ttaattcatc cattttccct ctatttgtgt tggcacaagc tattcatttt       480
     gcacgtgcta tatgcattac ttcgctttgc taagcgtggg gcggtcgcca ttttgagtac       540
     acagtttttc acgaaattgg ttgtattcag tgcttatttt tcaacgaata tcgcatgtgg       600
     gacagataac ggctagctag cacgcatgca attagctgtt aaaccgcata atctaggtgt       660
     gtgagcgttg gtgcctattt ttcattgccg atttacattc cgatattatt aagtacttta       720
     ttgttcgttt ttctattgca cgatggctga tatactcata agaaggcgtg gttcgatgaa       780
     ggcgaagctc actaatttca gtaaatatct cagtgttctc gaaagtaatg atgagttgtc       840
     tgacttgcaa gtgcttgacc ttgaaagtcg acttagcaaa tttgaaaaac tatatggtga       900
     attcgataca ttgcagaccg agattgagct gttatccgat aatccagacg acgctcatgc       960
     tgatcgcttc aaatttgaag aaatgtacca taacttgatt gccacggcgc ggaaagtcat      1020
     cactactgag caggggcaac gacggcagga gcagacttct gcaggttccg tatcaggctc      1080
     cgaggtgaca ggtgggacga gaaattttat acgtttgcct aaaattgacc ttccccgttt      1140
     tgatggcagc tatcagtgtt ggttagaata tagggacact tttctctcat taatacacaa      1200
     caacaacaac attgacaata ttagtaaatt tcattacctg cgcgcttcat taaagggaca      1260
     agccggtgaa ataataaaaa atatagactt caaacaggaa aattatagta tagcatggaa      1320
     attattatgt gagcggtatg acaacagtcg gttattaata aataatcatg tcaaggcact      1380
     atttaatgca gagcctattg tcagtgagac cagtgctgcc ttacgccgcc tggttgatgt      1440
     cacaaataag aacattcgag cattgacttt attgaatgag ccgactaggg acaccctaat      1500
     tatctatctt atgtcatcaa aattagatgc tactaccagc agggactggg aagaacaccg      1560
     cagcacttta ggcaattcac caacattgct tcaattttcc acatttatga ataataaggc      1620
     tgatttactt gaaactctag aagaaaataa taaatttgat aacatacaac cacctaacag      1680
     tgttaaatct aaaagtttta taataacctc acagaagcaa gaaaccaaag gtattgaaaa      1740
     agacaaaaac aaaattattt gcccgctgtg ttctcaaact cattatcttt attcatgtgt      1800
     agaatttaag aagttaacaa ttgaagatcg agtacagaaa gcaaaagagt ttaaagtatg      1860
     tttgaattgc ttacggggtg gccatataga aaagcgttgt agattcacac gttgtaaata      1920
     ctgtaaaaac cgtcataata ccttgttaca tttagatcaa cctgagactc aagttcagga      1980
     tcccatgcct agtgtctcct ctagcaatgt gtcattctca gcagatatac agcctacttc      2040
     tcagatacat gttttacttt ccacagctat ggtgagagtg gtgaacaata aaggaaaaag      2100
     gtgcaatgct agaattcttc tagacagtgg gagtacagcc aacttcatca ctgagaagtt      2160
     gagcaggagc cttggattgt ctcgagttgg tacttcctcc agggtaacag gtattaatag      2220
     tttgaccagt aacagtacac attcttgcaa cctcactatt gaatctacat atgaacatta      2280
     tcagtttaat ataacttgtt tcattctacc tgagataact aggagattac cagcgtccta      2340
     tataaatact gaaaacattc ctattccttc agggttattt ttagcggatc catcgtttaa      2400
     taccccatca gacattgata ttcttttagg agctgagcta ttttgggatg tcattcaggc      2460
     taatcacatc agtttaggaa aaaatttacc aaagttgtgt gagagtaaac tagggtggtt      2520
     aatctcaggt actgtacctg ctagccagca taaacaaaca catgtttgta atttttctag      2580
     tactactagt cctgatttga ataagttttg ggaacttgat acaatttcac ccaagcattg      2640
     tctttctgta gaggaacgtg cttgtgaaga gagttttaaa ttaaatacta tccggggttc      2700
     aaatggtcag tttattgtta ccatgccact taaagaagat cctagcgttc taggcgactc      2760
     atacgctgct gctaaacgta gatttttatc tttagaaaaa cgctttcaac gtgatccaat      2820
     ttataaaagt atgtatactg attttatgaa tgaatatgaa acattaggtc acatgactga      2880
     agatacaaat ttaccagcca ataacaaaaa tgtaagttat ttcatgccac atcatggggt      2940
     tttacgggaa tccagtaaaa ctactaagtt gcgaacagtt tttgatgcat cagcaaagtc      3000
     aagctcaggt ttatcactaa atgacatcca atttgtaggt cccactgtac agaacgatct      3060
     tctctcaatc ttaatgagat ttaggcaaca taaatatgta atctcagggg atatcgaaaa      3120
     aatgtataga gcggtagaat taaatcccag tcaacgatca ttacaacgaa ttctatttag      3180
     gaaaggcccc tcagagccta tcaaatcgta cacattaaac acagtcacat atggaacggc      3240
     gtcagcgcca tatcttgcaa ccaagtgcct tgtgagtctc gcagaggaca cagacaatca      3300
     gcaggtcaag agtagtattc aacgggattt ttatgtagac gatcttttat gcggaacaga      3360
     tacattagag ggcgctatag agctttgcca gaacataaaa tccatattaa attcagctaa      3420
     ttttaatcta aggaaatttc agtcaaatag tgctcttatt ctaaaaaaga tagtagatgt      3480
     aaacgatgat acttgccttg atttagattt gtccaataat tgcacatcaa agactttagg      3540
     tttattatgg aattgcaaac tagatatttt atcattttct attaatattg acactcacaa      3600
     aacaacaaaa agaaacatat tatctgttat tagccaaatt tttgacccat tggggttaat      3660
     aggtccatgt gttgttgaag caaaaattat aatgcaaaaa ttgtgggtca ataaatgtga      3720
     ctgggatgat aaggttcctc aggacatagc agatcagtgg tcaaaatttg tagaagcatt      3780
     aaagcattta aattctttga atattcctag atgggtcata tgtgagaact gtaaaattaa      3840
     tgagatacac atatttacag atagcagtga aaaggcatat ggtgcatgcg tctatatacg      3900
     cagtattgat agtagtaatg cagtaacggt acgcctacta gcttctaaaa atcgggtagc      3960
     ccctgtcaag ccaacaacaa tgcccaggtt agaactatgt ggagcattgg tgggtgcaag      4020
     attgtgtaca aaggtcaaag aatcactcac tatatctgtt agcagatgtg ttttttggtg      4080
     tgattcaaca attgttttga gctggttgtc cgcaccatcg acacaactca agccttttgt      4140
     caggcatcgt gtcaatgaaa tacaggaaac caccctcgga tccttatgga actatgtgcc      4200
     aacacgagac aatcccgcgg atctagtttc tcgaggggtg aaggctgacc atatcagcga      4260
     ctccagtcta tggtgggcag gcccttcatt tttattacaa gatgaaagcc tgtggccaaa      4320
     gcctcccaac gacattgcaa aacaagactt gcctgaacta acttgctatg taactcagtc      4380
     caacaatagt gacattcaac atcaaacctt aattcaaaaa ttaattcaca aatattcaga      4440
     cttcaaccgt ttgcaaagag ttgtggccta cattaaaagg tacatttata atttaaaaaa      4500
     taaaaatagc aagttagtag ggtggctgtc gaatcaggaa attcaatctt ctttgaaatg      4560
     tattctgctt aacgcacaac ttgaaatatt tccagatgaa tattctactt taaaattagg      4620
     aaaatccctg ctccacaaaa accgtctcat atcattgtca ccttttttag actctgatgg      4680
     catcattcga gttggaggca ggttaaataa ttccccttac gattacaacg tgaaacatcc      4740
     tatactcctg tgcagtaagc atcatataac taaaatctta tttcaagctg ttcacaaaag      4800
     gctgttacac gccgggcctc agttgctctt ggcaaacatt aggcaaaact attggccttt      4860
     ggggggaaga aatttgtcta ggtttaccgt tcaaaaatgc gttgtgtgtt ttagatataa      4920
     ggctcaaaat gtacagccaa taatgggtca acttccaagt tcacgaagta atcttgaatt      4980
     tccattctta aattcaagtg ttgactatgc cgggccaata ctgatagctg accggaaggg      5040
     aaggggatgc aaacttgtaa agtcttacat atgtatcttt gtctgcctag ccattaaggc      5100
     tgttcacctg gagcttgtca cggaccttac caaggaggca tacgtggccg ccttaaaaag      5160
     attcattgcg cgccgtggca agcctcgcag cattttgtct gataacggaa caacctttgt      5220
     cggttctgat aaccaacttc gtgctttctt gcagaattca aacctttcct atgacgtcgc      5280
     gcaagaagga attgaattca actttgtgcc ggcctactct cctcatttca acggcgtagc      5340
     tgaagccgcc gtgcgatcca cgaaacacca tttaaagaga ttactcactc tcactcactt      5400
     cacatatgaa gaaatggcta cttgtctcac ccaaatagag gcaattctca attcccgacc      5460
     acttactccc tgctctcctg atccacttga tttttgtgcc ctaacacctt cccacttttt      5520
     aattggaaga tcactcacgt ccgttccgca tccacagatg actgacagcg gaaacatcag      5580
     tcgactcgag cgattccaaa gggtggaata cataaagcag cacttttgga aaaggtttaa      5640
     cactgagtat atttatctgc tgcagcaaaa aactaagtgg tcgacgacaa cgggagacat      5700
     caaggtgggc agcctcgtcc tggtaaagga taaggcgctc ccacctctct gctggctact      5760
     gggtcgcgtc gtacaaacgt acccggggtc cgacggtgtt gcaagagttg cagagttaaa      5820
     aactaagaag gggacacttc ggcgagcctt caacaacatc tgcccgctgc cactctcttg      5880
     aagactcctt caacccgggg agca                                             5904
//
ID   BEL-11_TrNi-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-244
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1046-1046 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 244 BP; 62 A; 68 C; 54 G; 60 T; 0 other;
     tgttcacgcg cgaacgcacc cataagaaac acggggggag cggggcgcgg aggacggaac        60
     gctgcgcgcc gacgccattg cgaccgccga ccagaccttg ttcaactcgc aagcgagcga       120
     gcgcattccg cccttcttta ttacatttcc gtttgtgtgt cagttctttt ttattgtttt       180
     tctatacaaa ttatacaaat taatccaaaa tacagtccac cattattgaa gagcacccct       240
     aaca                                                                    244
//
ID   BEL-120_AA-I repbase;    DNA;    INV; 5727 BP.
XX
AC   AAGE02025227;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-120_AA_;
KW   BEL-120_AA-LTR; BEL-120_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5727
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025227; Positions   35175   40901.
XX
CC   Positions [4750-5331] - Integrase core
CC   'ACTTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..5709
FT                 /product="BEL-120_AA-I_1p"
FT                 /translation="MLEHTPVKSKQDKMAELKTLVHLRGQAKAKVTRIRKA
FT                 IEEVIEGGVVQFTIAQLKVYSRNLETHFQEYLNLHHQITALLPPEKLDDND
FT                 ATYLQFETHHTETAMLVEGLISSATPQPNPPPHVLQPDAGMMQPQIVVQQQ
FT                 PLPVPIPSFDGKPENWPRFQQVFSDIMNRSRDSNAVKLHHLERALAGGSAA
FT                 KLIDPKTLSDGNFAHAWELLLDVYEDERKAVDSHIHGLLGLKRMNKESSKQ
FT                 MRELLNEVTRHVEGLKLLEQDLEGVSERFVVVILSDAFDPETRKQWEATIP
FT                 HKEIPTYEDTIKFLKERCSLLERCEASHPKLSSTKESNPKSTPKPQPAKSF
FT                 AMATPVANSEATCEICSASHPNFKCDRFVSLTVPQRRVKVRDLNLCFNCLR
FT                 KGHLALKCSSSKSCQECQGRHHTLLHEPKIPKPDPKPIDIPKSKPESAQVV
FT                 VSSEVPPPVESVSPPVTSNPVHKVPRSDGTLLLTAMVDVLDSHGNSHPCRA
FT                 FLDCGSQPHLVSRSLVECLGIDQEPVHVEVFGATGKRSVLDRKATLSFRSR
FT                 CSNYQSKIECLVTDVVTGPLPGRRIDTQSWNIPSGLLLADPNFHTPGEVQL
FT                 LIGMKLFFHLMLPGQLMLGSQLPILKETRLGWVVAGGAEDVDENQHCYTAS
FT                 LRPLTECMEKFWSVESVESIDAVSKEEQDCEQLFSSTTVRNPNGTYTVHLP
FT                 LKESVSELGNNHSLALKRFHILENRFAKNADLKQAYVDFINEYKSLSHCQP
FT                 IAESDDAPDKLVHYLPHHAVLKPSSSTTRLRVVFDASARSTGPSLNDVLKI
FT                 GPTVQDDLFSIILRFRKHRYAITADISKMYRRIRVDESHSGLQRIFWRENP
FT                 NDPLQILELSTVTYGTASAPYLATRTLLQLARDESQRFPIASKVVEEDVYV
FT                 DDVVTGADTVEQAVNLRSDLTNLFNSGGFPVHKWCASDATILDTVPEEDRE
FT                 KFIELESSDVNRVIKTLGLLWDPEQDIFRFHCELKFEPLSMPTKRIVLSEI
FT                 ARLFDPLGLVAPVIVLAKEIMQRLWKNKVGWDDPLDEDTLKSWLEFRNSLK
FT                 HIDMIKIPRFVGLEGVEYVEVHGFADASSRAYGAVVYLRVVAANGIKISLL
FT                 CSKSRIAPLSPLTIPKMELCAALLLSRLIPKSISALKIDFQRVCLWSDSSI
FT                 VLAWLKKSANQLEVFVRNRVTEINTATEGYEWSYIRSEENPADVVSRGQMP
FT                 QNLASNCLWWNGPSFLKSRQYEVANPDAIPDSELPCLVVTLPVVCATVVLE
FT                 DVPFLEAFGSFRKLQRVVGYALRFVNNCKSSHADRILSKTLTVPELRKSMI
FT                 VIIGLVQRIEMSDEISLVSSKKPSRRLAALDPMLVDGLLRVGGRLENSRLP
FT                 YEARHQIILPNKSPVCDLLIRDMHLENLHLGPSGLLSLLRQRFWLINAKST
FT                 IRKVLRKCVTCFRSRPRCLQPMMGRLPETRVVPSAPFSRTGVDFAGPVFVK
FT                 VGLRKSVRVKAYICIFVCLATKAIHLELVSDLSSAAFVAALQRFVSRRGLV
FT                 EEIHSDHGTNFVGAKSDLHDLYFLFRDDQTKGKIDEFCCAREIVWKFIPPR
FT                 SPNFGGLWEAGVKSTKTHLRKVLSNACLTFEEFYTVLTQIEAVLNSRPLFA
FT                 NSLDTHEPSALTPGHFLIGRELVAIPEPTLEDIPANHLTRWKYLQSLREHF
FT                 WRRWSNEYLNTLQARSKWFKGSQNVIPGLIVLVKEDNLPPQSWKLGKIMKV
FT                 YPGKDLIVRVVDVKTATGVYRRPVSRLAPLPIEENDDALASADPQ"
XX
SQ   Sequence 5727 BP; 1448 A; 1400 C; 1386 G; 1493 T; 0 other;
     ttgtttggtc ccgattcgaa ccggatagca gcatcggtgg cattccaagc gcagctggaa        60
     ggatatttag taagctctgg tggaggaaaa cgaaattgct ccgcgattat ccctccccgt       120
     acggcctcac tcgcgttccg gaagtacagt tcgcgcgaag tgaaaaaagt gaaacaggtc       180
     cgaacaagtt cggtgaaaat tgtagtgtgt gtgtgagccc atcgagggct gtgaatcctg       240
     tccgaacaag tttcggaaaa gacagttcag ttgtgttgtg agcccgacgt gggctgaaaa       300
     atcctgtccg aacaagtttc ggaaaagact ttagtgtgtg tgtgaaaaag gacagttcca       360
     gtagtgtgtg tgcccaaccg ggacgaagaa aaagtgctaa aacgtgtgtc gataatgcta       420
     gaacacaccc ccgtgaaaag caagcaggac aaaatggccg agctgaagac gctcgtccat       480
     ctccgtggcc aagccaaggc caaagtgacc cggatccgga aagccatcga ggaagttatt       540
     gaaggcggcg tcgtgcagtt caccattgcc cagctgaaag tgtactcgag gaatttggag       600
     acccatttcc aagagtacct caacttgcac caccaaatca cagctttact gccaccggaa       660
     aagctggatg acaatgatgc cacctacctt cagttcgaga cccaccacac ggaaaccgcc       720
     atgttggtgg aaggcctaat ttcgtccgct accccgcaac ccaacccacc accgcatgtg       780
     ctccaacccg atgcaggtat gatgcaacca cagattgttg tccaacagca accacttccg       840
     gttcctattc cgtcatttga tgggaagccg gaaaattggc cacgattcca gcaagtgttt       900
     tccgacatca tgaatcgatc cagggactcc aatgctgtga agctacacca tcttgagcgg       960
     gcactagcgg gtggttccgc cgcgaaacta atcgacccga agacgctcag cgacggaaat      1020
     ttcgcccacg cttgggagct attgcttgac gtgtacgaag acgaacgaaa ggcagtagac      1080
     tctcacatcc atggcttgct gggtttgaag cggatgaata aggagagctc caagcagatg      1140
     agggagcttt tgaacgaggt aacccgccac gtcgaaggat tgaagctgtt ggagcaggat      1200
     ttggaaggcg tatccgagag gtttgtcgtc gtcatcctgt ccgatgcatt cgaccccgag      1260
     acgaggaagc agtgggaagc tacaattccc cataaggaaa tcccaacgta tgaagacacc      1320
     atcaagtttt tgaaggagcg atgttctttg ttggaacgtt gcgaagccag ccacccgaag      1380
     ttgtcgtcca ccaaggaatc caaccccaag tccaccccga aaccccaacc ggcgaagtcg      1440
     ttcgctatgg ctacacccgt agctaatagt gaggcgacct gtgagatctg tagtgcgagt      1500
     catcccaact tcaagtgcga caggtttgtt tccctaacgg taccccaaag gagagttaag      1560
     gtaagagatc ttaatctttg ctttaactgt ttgaggaagg gccaccttgc cttaaaatgc      1620
     tcttccagca aatcttgcca ggagtgtcaa ggaagacacc ataccctact gcatgagccc      1680
     aaaattccaa aacccgatcc aaaacctatt gacattccaa aatccaaacc agaatctgcc      1740
     caagttgtcg ttagttccga agttccacct ccagtggaaa gtgtttcgcc tcctgttacg      1800
     tctaatcctg tccataaggt tcctcggtcg gatggcacac ttttgcttac ggccatggtt      1860
     gacgtcctag acagccatgg aaattcccat ccttgccgtg cattcctcga ctgtggttcc      1920
     caaccacatt tggtttcccg ttcattagta gaatgtttgg gaatcgacca ggaacctgtc      1980
     cacgttgaag tgtttggagc aactggtaaa agatcggtgc tcgataggaa ggcgacactt      2040
     tcattccgct cccgttgttc gaattaccaa tccaaaatcg aatgtttagt caccgatgtg      2100
     gtgactggtc ccctccctgg tcgaaggata gatacccagt cttggaacat tccctcaggt      2160
     ttgttgcttg ccgatccaaa cttccatact cctggagaag ttcagctttt gattggaatg      2220
     aagcttttct tccatttaat gttgcccggt cagttgatgc ttggtagtca gctgccaatc      2280
     ctaaaggaaa ctcgtttggg atgggttgtg gccggtggtg ccgaggatgt tgatgagaat      2340
     cagcattgct atacagccag tttgcgaccg ctcacggaat gtatggagaa gttttggtct      2400
     gttgagtcgg ttgagtccat tgacgccgtg tctaaggaag agcaagattg tgaacagctt      2460
     ttcagttcca ctaccgttcg aaatcctaat ggtacttaca ctgtccatct tccgttgaag      2520
     gaatccgtaa gcgaactggg aaataaccat tcattggctt tgaaacgatt ccacattctc      2580
     gaaaatcgct ttgccaagaa tgctgacttg aaacaagcgt acgtcgattt cataaacgaa      2640
     tacaaatcgt tgtcccattg ccagcctata gctgaatctg atgatgcccc tgacaagctc      2700
     gttcactatt tgcctcacca cgcggttttg aaaccaagca gttccactac ccgattaaga      2760
     gttgtcttcg atgcctcggc tcgatcaact ggtccatctc tgaacgatgt tctaaagatc      2820
     ggtcctaccg tccaggacga tctgttttcg ataatcctcc gattccgaaa gcatcggtat      2880
     gccataacag ctgacatctc caaaatgtac agaagaatcc gggttgatga aagtcattct      2940
     ggtcttcaaa gaattttttg gagggaaaac cccaatgatc cactccagat tcttgagttg      3000
     agtaccgtca cttatgggac agccagtgct ccatatttgg ccacccgaac acttttgcag      3060
     ttagcccgtg atgaatccca gcgttttcca atagcgtcca aggtagtaga agaggatgtc      3120
     tatgtggatg acgtggtgac gggagctgat actgttgagc aggccgtcaa tctccgttca      3180
     gatttgacaa atctgttcaa ctctggcgga ttcccagtcc ataaatggtg tgcgagtgat      3240
     gcaaccattc tcgacactgt tccagaggaa gaccgcgaga agtttataga acttgaaagc      3300
     tcagatgtca acagagttat caaaaccctg ggcctactat gggatccaga gcaagatata      3360
     tttcgttttc attgtgagct gaaattcgaa ccattgtcca tgccaaccaa acgtatcgtc      3420
     ctttccgaga tagcccggtt gtttgatcct ttgggactag tcgctccggt gatagttttg      3480
     gccaaggaga ttatgcaacg tttgtggaag aataaggttg gatgggacga tcctttggat      3540
     gaggatactt tgaagtcttg gcttgaattt cggaattctt tgaagcatat tgacatgatc      3600
     aaaattccgc gcttcgttgg gctggaaggt gtcgagtacg ttgaagtaca tggttttgcc      3660
     gacgcttcca gtcgtgccta cggagctgtg gtctacctga gagttgttgc tgccaacggc      3720
     atcaagatct cattgctctg tagtaaatca agaatcgccc cgctaagtcc tttgacaatt      3780
     ccaaaaatgg aattgtgtgc cgccctgttg ctatcaaggt tgattcccaa gtccatctcc      3840
     gctttgaaaa tagacttcca acgcgtctgt ttgtggtccg atagtagcat tgttctcgca      3900
     tggctcaaga aatctgccaa ccagcttgag gtctttgtcc gcaaccgtgt gacggagatt      3960
     aataccgcta ccgaaggcta tgagtggtcc tacatccggt cggaagaaaa cccagctgat      4020
     gtcgtgtcca gaggccaaat gccacaaaac cttgcgagca attgtctgtg gtggaacgga      4080
     ccatcttttt tgaaatcgcg ccagtatgaa gtagcgaatc ccgatgcgat cccagattct      4140
     gaactaccct gtctagttgt gactctgcca gttgtctgtg ctaccgttgt tttggaggac      4200
     gttccctttc ttgaagcttt cggatctttc cgtaagctgc agcgagtagt cggatatgct      4260
     ttgcgctttg tgaacaactg caaatccagc catgcagatc gcatactttc caaaactctg      4320
     actgttcccg aactgcgtaa gtcgatgatt gtcatcatcg gactggttca acgtattgaa      4380
     atgtcggatg aaattagcct ggtatcatcc aagaaaccca gtcgtcgttt ggctgcgcta      4440
     gacccaatgt tggttgatgg cttactaaga gtaggtggta gattggagaa ttctcgtctg      4500
     ccttacgaag cgcggcatca aatcatactt ccgaataaga gtccagtttg tgacttgctg      4560
     attcgagaca tgcacctgga aaaccttcac cttggtcctt ctggattatt gtccttgctt      4620
     cgtcagaggt tctggttgat caacgccaaa tcaaccattc ggaaggtttt gagaaagtgt      4680
     gtgacttgtt tccgcagtcg tcctcgttgt ctgcagccca tgatgggccg tttacccgag      4740
     actcgcgttg ttccttccgc tccattctct cgtaccggcg tggactttgc cggtccggtt      4800
     ttcgtaaagg ttggcctccg aaagtccgtg agagtgaagg cctacatatg tatttttgtt      4860
     tgccttgcca caaaggcaat ccatttagaa ttagtttctg atctgtcatc tgcagcattt      4920
     gtcgctgctc tgcaaaggtt tgtgagccgt cggggtctcg tggaagaaat ccattccgac      4980
     cacggcacaa actttgttgg agctaaatcc gatctccacg atctctattt cttgttccgc      5040
     gacgatcaga ctaagggaaa gatcgatgag ttttgttgcg cacgagaaat cgtctggaaa      5100
     ttcattccac ctcgatctcc caactttggg ggattgtggg aggctggggt gaagagtaca      5160
     aaaacccacc tacggaaagt cttgtcgaat gcttgcctca catttgagga gttctacact      5220
     gttctcacac aaatcgaagc agtgttaaac tcgcgtcccc tcttcgctaa ctctttggat      5280
     acccacgaac cctctgcctt aacgcctggt catttcctta tcggcagaga attggtcgct      5340
     attcctgagc ccacgcttga agatatccct gcaaaccatt tgactcgatg gaaatacttg      5400
     caatctctcc gtgaacactt ttggagacga tggtcaaacg aatacctcaa cactctacaa      5460
     gcccgctcta agtggttcaa gggatcccaa aatgtaattc ctggattgat cgttctggtt      5520
     aaggaagaca atcttccacc gcagtcatgg aaattgggca agatcatgaa ggtttatcct      5580
     ggcaaggatt tgatagttag ggtagtagat gtaaaaactg caaccggggt ataccgacgt      5640
     ccagtttccc gactcgcacc acttccaata gaagaaaacg atgacgcact cgcatctgca      5700
     gatccacagt gaatcccggc gggtgta                                          5727
//
ID   BEL-120_AA-LTR repbase;    DNA;    INV; 946 BP.
XX
AC   AAGE02025227;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-120_AA_;
KW   BEL-120_AA-I; BEL-120_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-946
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025227; Positions   34229   35174.
XX
SQ   Sequence 946 BP; 233 A; 251 C; 181 G; 281 T; 0 other;
     tgttcggttc aaaaccgaag tttagtttta agtaattttt gtttgatttg ttttccacca        60
     ttttgtttga attcagccct aaaatccatt acctttatat aaacccaaaa tcattgcctc       120
     tcttcccaac tccccgtgtc aattagtcat ttgcgccttt tccccaatat ccacaaaagt       180
     caataccttt cccccattcc cgaaacaaaa ggtaataaat gttagtttgt aagtcaacca       240
     gtccaaaagt cagccagaat gacagtattt cccatcgcag caaccctctc ccatccagct       300
     ttgtagtttt tgttcttttt gttgtttttg tttcgccctt tgacgtttcc atggagatgg       360
     gaggagctag ttagaatttt tcaattgtca cgatgccaag attataggta taaaagtaaa       420
     caattttgcg caaagcgcat cagtattttt gtaaccgttg gagagtgaac accaagaata       480
     aatcgccgat tgaattagaa accagcagtt tttcctttca ccgaagagca tccagtcccg       540
     tcctccactg ccagtcgagc cgatcgctgc tgctgccaaa accgaagacc agatacagtc       600
     caccgttcgt cgctggcaat tgatttgtcc gttcgttcct gtccacaaat tgatcccacc       660
     cgaggtagtc gattgtggac acggttcgtt tgcacgcgga aaaccaattg tctagcagca       720
     ttcgagttcc gccgcttctg gaacagcaac aagggttcca tagtagcgtt tgtcccctcg       780
     attcgatcca cagtcagacc tttccggtaa tctgctgtgg acaccgtttc gactgcacac       840
     ggacaaccta ctagccctgg cctgttgttg ttagccagtc gctggaatcg attgcgcacc       900
     cgccaggatc ccgttccctc cagtttgcca ctttgtgcat cgcaca                      946
//
ID   BEL-121_AA-I repbase;    DNA;    INV; 6508 BP.
XX
AC   supercont1.19;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-121_AA_;
KW   BEL-121_AA-LTR; BEL-121_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6508
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.19; Positions 1561038 1554531.
XX
CC   Positions [5568-6125] - Integrase core
CC   'CCTGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..3373
FT                 /product="BEL-121_AA-I_2p"
FT                 /translation="MAAARYNCTCGEPIVGEEKMAQCSECVRPIHPACAMI
FT                 GRSIGGDRVVCARCYRRDPPPPPSTTRRSTSSSTRAKLLLDLQRLEEEKCL
FT                 QEKAAEEKVRREREYLAKKYELMQAELLEQSTASSRRSVSSIEKVQHWLLD
FT                 KPTDNVESGIGQSEIPAGVSSRTGTVYKPIPTVPTTVAAVSTPKSGQHAQL
FT                 SFGLNPSQPLSQDASQCQFSGTMGEQQVAHAPPENQTQNPLDWSLTWEFPE
FT                 EPMPIPKRRIAVDLEEIQRKFCGVQLRPPNSSQHPVSRPPLVSDPVQREAQ
FT                 HNVIHGIPTQQHETPATSPVSASGAGQVQAVLQPITTQYQQTSGLESAPTG
FT                 QESSAKITLVSQTCSNINPIQIRPLQSNVTFDVPKLSSFISHTPFPLTEPC
FT                 KPPQISQNNAFTFNPAHRSTPHVRPATAPSVRFADFPPVSSSSLPLSTGVQ
FT                 TVQSNTVPIASSVAANSDPVVPNVFPQAFLPFDSTSAPAPVHQPWISSPTS
FT                 QQLAARHIVPKELPFFSGDPVEWPLFLSCFQNTTQLCGFSHGENLMRLQRS
FT                 LKGNALEAVRSLLLEPSSVPMILSTLQTLYGRPDLVINSLLQKVRSTPAPK
FT                 PDKLESLISFGLACQNLCGHLRAAGQQAHFSNPALLQELVSKLPANIKLDW
FT                 ALFKQKCPAVDLGTFGDYMAQLVVAASDVAPYQPTEEARSSSGKVKGKEKL
FT                 YLNTHASGNTVDNVGRRNPPSNPGGKQNQPKPCPICGKQGHKVRDCDDFKK
FT                 CNLEERWKRIQEHYLCRRCLIAHGKFPCKATSCGMEGCEERHHKLLHPGKP
FT                 QSIVPAIQPTATETVNVHTALKVSTLFRIVPVTLYGTDRSVHTFAFLDEGS
FT                 SSTLLDVRIARELGLKGEVHPLYLQWTSDVERCEDNSQLIRLEISGRGAKK
FT                 RYVVAAAHTVEKLSLPQQSLPFDQLAQQFPHLRGLPIRGYCNAIPTILIGL
FT                 DNTRLKIPLKVQEGKVGQPAAAKTRLGWTVYGPIPGECSSTQKCQLHLYKE
FT                 ARNPDDVLHDLVKEFFSMEHVGVAVAPLLEGSDEMRSRKILEETTSRLPSG
FT                 RFQTGLLWRYDRINFPDSKPMAESRLKSLEGRLWRKPELFENLKQQR"
FT   CDS           3649..5424
FT                 /product="BEL-121_AA-I_1p"
FT                 /translation="MFHQFQIRPEDRQAQRFLFRSDPSKAPDIYVMDVATF
FT                 GVTCSPSAAQFIKNKNAKEFESEFPEAAAAIVHNHYVDDYLDSRDTVDEAA
FT                 DMALQVRTVHAKAGFHIRNWMSNSREVLLRVGDSAEGSAKNFKTHAATVSE
FT                 RVLGMSWFPESDEFRFRGFFREQIIPLLHGDVVPTKRQLLQVVMSIFDPLG
FT                 LVSLIVVHGKILVQKSWRANIGWDDKIDEDLLKLWRRWTELLGQLDTVRIP
FT                 RCYFPGYLPESYESLQLHIFVDASEEAYVATAFFRIVDQSQVRCALVASKT
FT                 KVAPLKLLSIPRLELQAALLGARLAKSVAENHTLRIKQRFFWGDSSTVLSW
FT                 LRSDHRRYRQFVAYRVSEILDTSKVDEWHYVPSHLNVADDATKWKERLQIS
FT                 NSHRWFCGPDFLYEPQNLWPKQEAQSTSTTEELRPIHVHCEVRKEQVVQFC
FT                 RFSKWERCLRSVAYVHRFIDQLKRKRNKEESDVTAILTREELQRAEQTIIK
FT                 LAQFEVFGDEVVTMQNNQSLPVDQQQRLESSSKLYKLSPFLDNQGVVRMEG
FT                 RIDGFSDVEGRTSNTPLCYRRTTTLPSSSLTRTIDGTNIPTEKQQ"
FT   CDS           5433..6506
FT                 /product="BEL-121_AA-I_3p"
FT                 /translation="MRQKYHLSEMRAAFRKIGKSCMWCKIYKATPAVPRMA
FT                 PLPEARVTPRIRPFSFVGVDYFGPLLVVQGRREVKRWIALFTCLTIRAIHL
FT                 EVVTSLSTECCKMALRRFIARRGAPSEIYSDRGTNFVGVSGELSKQVRAIN
FT                 QELASTFTNTVTQWRFNPPAAPHMGGSWERMVRSVKCALASLSVERKPSEE
FT                 VLVTLLVEAESMVNSRPLTYMPLQTSEHPALTPNCFLMLSTSGVNQLSTQL
FT                 VDDRQALHTSWFLCQRLLDQFWTRWVKEYLPTITRRTKWFVDTRPVSAGDL
FT                 VVIVDDRVRNGWIRGQVLRVFPGRDGRCRSANVQTATGVLRRPVAKLAVLD
FT                 IGGNAREDTEQYGSG"
XX
SQ   Sequence 6508 BP; 1673 A; 1694 C; 1682 G; 1459 T; 0 other;
     aatcttttag atttttaacc gcgaccgttt tcaacgacgc cacgaggagc cacaaagtgc        60
     gatggcggcg gccagataca attgtacgtg cggcgaaccg atcgtcggtg aagagaagat       120
     ggctcagtgt agtgagtgcg tacgtcccat tcatcccgcg tgtgcaatga tcggtcgatc       180
     tatcggtggc gatcgcgtcg tgtgtgcgcg ttgttatcgg cgagaccctc cacctccccc       240
     ttcgactaca aggcggtcga caagttcttc tactcgagcc aagctgttgc tcgatttaca       300
     acggctcgaa gaagaaaagt gcttgcagga aaaggctgcc gaagaaaaag tgagacgtga       360
     aagggaatat ctcgcgaaga aatatgagct catgcaggct gagctgctag agcaaagtac       420
     agcaagcagt cgtcgatcgg tgtccagcat cgagaaggtt cagcattggc ttctggacaa       480
     gcccaccgac aacgtagagt ccggcatcgg gcaaagtgaa atccccgccg gtgtatcgtc       540
     tcggacaggc acggtctaca agccgatccc gacagtacca acgacagtcg ctgcagtttc       600
     aactcctaag tcagggcagc atgcgcagct ttcttttggg ctcaatccga gccagccact       660
     cagccaagat gcgtctcagt gtcagttctc gggcacgatg ggtgagcaac aagtcgccca       720
     cgctccacca gaaaatcaaa cgcaaaaccc gttggattgg agtttgactt gggaattccc       780
     tgaggaaccg atgcccattc caaagcgacg aatcgccgtg gacttggagg agatccagcg       840
     aaagttctgt ggagtacagt tacgtccacc taattcaagc cagcatcctg taagtcgtcc       900
     gccactggtc agtgatccgg tacaacgtga agcccagcat aatgtcatcc acgggattcc       960
     cacacagcag catgaaacgc cggccacaag cccagtgtcg gccagtggcg ccggacaagt      1020
     ccaagcggtg ttgcagccca tcacaaccca gtaccagcag acatccggcc tcgaatcagc      1080
     accaactgga caggagtcgt cggcgaaaat tactttggtg agtcaaacgt gctctaatat      1140
     taatccgata caaattagac cattacaaag caatgtgaca tttgacgtac caaaattgtc      1200
     gtcatttatt tctcacactc ccttcccctt gaccgaacca tgtaaacccc cccaaatcag      1260
     ccaaaacaat gcgtttacct tcaatccagc acatagaagc actcctcatg tccgccccgc      1320
     gactgccccc tccgtgcgat ttgctgactt tccgcccgtt tcgtcgtcca gtttgccatt      1380
     gtctactgga gtgcaaacag ttcaaagcaa tacggtgcct atagcgtcgt cggttgctgc      1440
     caacagtgat ccagtggtgc ccaacgtgtt tccacaagcg tttcttcctt tcgactctac      1500
     ctctgcacct gcgccagtcc atcaaccatg gataagttct ccgacatctc aacagctcgc      1560
     tgctaggcac atcgttccca aggagcttcc tttcttttcg ggcgatcccg ttgaatggcc      1620
     gctgttcctg agttgtttcc agaacaccac ccaattatgt gggttttccc atggagagaa      1680
     cttgatgcgt ctgcaacgga gccttaaagg aaacgccctg gaagcagtga gaagtttact      1740
     tctggagcca tcatcggttc ctatgatcct ctcaacactt cagacgctgt acgggcgtcc      1800
     cgatctggtc atcaactctc tactgcagaa ggtacgttct actccagccc caaaaccgga      1860
     caagttggag tctctgatat cgttcgggct agcctgccaa aacctttgcg gtcatctgcg      1920
     cgcagctgga caacaggctc acttctcgaa tccggcattg ctgcaggagc tagtcagcaa      1980
     attaccagcg aacatcaaac tggattgggc gcttttcaaa caaaagtgtc cagcggttga      2040
     cctcggcaca tttggtgatt acatggcgca actggtggta gctgcaagtg acgtcgctcc      2100
     ctatcaaccg actgaagaag ctcgttctag ttcgggaaaa gtaaagggaa aggagaagct      2160
     gtatttgaac acccacgcat ctggcaatac ggtggacaac gttggtagac ggaatcctcc      2220
     aagcaatcct ggaggtaagc agaaccaacc aaaaccgtgc ccaatttgtg gaaaacaagg      2280
     acataaggtg cgagactgcg acgatttcaa aaagtgcaat ctggaggaac gttggaagcg      2340
     tattcaagag cattacctgt gtagacggtg cctgatagca cacggaaagt tcccgtgcaa      2400
     agcaacatcg tgcggaatgg aaggatgtga agagcgacac cacaagctat tgcatcctgg      2460
     caagccacag tcgatagttc cagcaataca gcccacagcg accgaaactg ttaacgttca      2520
     caccgctctg aaggtatcca cgctctttcg tatagtacca gtgacgctgt acggtaccga      2580
     tagatccgtc cacacgtttg cgtttttgga tgaagggtcc tcgtctacat tgctcgacgt      2640
     ccgtatcgcc agggagttgg ggttgaaagg tgaagtccac ccgctttact tgcaatggac      2700
     cagtgatgtt gaacgttgtg aggacaattc tcagctaatt cgactcgaaa tctcgggtcg      2760
     tggagccaag aaacggtacg tcgttgcagc agctcacacc gtggaaaaac tgtctcttcc      2820
     tcaacaaagt ttgccgttcg atcaactcgc tcaacagttt ccgcacctcc gtggtctacc      2880
     cattcgagga tactgcaacg ccattccaac aatcctgata ggtttggaca acacgcgcct      2940
     gaagattccc ctcaaggtcc aggaaggcaa agtcggtcaa ccagcagcgg cgaaaacaag      3000
     gctgggttgg acggtatacg gccccattcc tggtgaatgt tcctctactc agaagtgtca      3060
     gcttcatctg tacaaagaag ctcgaaaccc tgatgatgtg ttgcacgacc tagtgaagga      3120
     gtttttctcg atggagcatg ttggcgtcgc tgtagcacct ttgctggaag gttccgacga      3180
     aatgcgatcc agaaagattc tcgaagaaac gacttcacgg ctgccatccg gacgattcca      3240
     gacagggctg ctttggagat atgatcgcat caactttcca gacagtaagc cgatggcaga      3300
     gagtcggctc aaatcgctgg agggtcgttt gtggcgcaaa cctgaactgt tcgagaacct      3360
     gaagcagcag agataatcga gtacgtggaa aaagggtacg cgcacaaaat tacacaggag      3420
     gagattgtca gctcggatcc ccagaaagtg tggtatcttc cattgggagt agttgttcat      3480
     cccaaaaagc ctgggaaagt tcgcatagtt tgggatgcag cagcgaccgt ccaaggccaa      3540
     tcccttaatt ccgccttgct tccgggacca gatctgttgt cctccctccc gtcggtgctc      3600
     tccaaatacc gtcaacgcca ggtggcgatc tgtggcgata taagggagat gtttcaccag      3660
     ttccagatca gacccgagga tcgacaggca caacggttcc tgtttagaag tgacccttca      3720
     aaagcacctg acatctacgt gatggacgtg gccacttttg gtgtaacttg ttctccctct      3780
     gctgcgcagt tcatcaaaaa taaaaatgcc aaggagtttg agtccgaatt tcccgaggcc      3840
     gccgcagcaa tcgtccacaa tcactatgtg gacgactatt tggatagtcg ggataccgtt      3900
     gatgaagcag cagacatggc gctgcaagtg agaacggtcc atgctaaggc cggatttcac      3960
     attcggaact ggatgtccaa ctccagagag gtgcttttac gggtcgggga ttcagctgaa      4020
     ggatctgcga agaacttcaa aacgcatgca gctacagttt cggaacgtgt actcgggatg      4080
     agctggtttc cagaatcaga cgagtttaga ttccgtgggt ttttccgcga acaaataata      4140
     cccctgcttc acggagatgt tgtcccaaca aaacgtcagc ttctccaagt ggtcatgagt      4200
     atttttgatc cactaggtct ggtgtcgctt atcgtggttc acggaaaaat cctcgttcaa      4260
     aaatcgtggc gagcaaacat cgggtgggac gataaaatcg acgaagatct actcaaactg      4320
     tggcgtcggt ggacagaact actggggcag ctcgacacag ttcgcatacc acggtgctac      4380
     ttcccagggt accttccgga aagctacgaa tctttgcagc tacatatttt tgtagatgcg      4440
     agcgaagagg cgtacgtggc aaccgccttc ttcaggatcg ttgaccagtc ccaagttcgc      4500
     tgcgctctgg tagcttcaaa gaccaaagtt gccccactga aattactatc gattccccgt      4560
     cttgagctcc aggctgcgtt actaggagcc agattggcga agtccgtggc ggaaaaccac      4620
     acactgcgaa tcaaacaacg cttcttctgg ggtgattcct ccactgtcct ttcttggcta      4680
     cgctcggacc atcgaagata tcgacagttt gtagcgtacc gcgtatcgga gatcttggac      4740
     acttcgaagg tcgacgaatg gcactacgtt ccctcgcacc taaacgtggc agatgacgcc      4800
     actaagtgga aagaacgact ccagatcagc aacagtcatc gctggttctg tggaccagac      4860
     ttcctatacg agcctcagaa cctttggcca aaacaggagg cgcaatctac ctcaactacg      4920
     gaggaactga gaccaatcca cgtacattgt gaagtccgga aagaacaagt ggtacagttc      4980
     tgtcgctttt ctaagtggga gcgttgtcta cgatcagtcg cctatgttca ccgattcatt      5040
     gaccagctga agcggaagcg gaataaagaa gaatccgatg taactgccat ccttactcga      5100
     gaagaacttc agcgagcgga gcagacgatc atcaagctgg cacagtttga agtttttgga      5160
     gatgaggtgg tgacgatgca gaacaaccag tctctaccag tggatcaaca gcagcgcctc      5220
     gaaagttcaa gcaaactgta taaactgtct ccatttttgg acaaccaagg cgtagttcga      5280
     atggaaggac gaatcgatgg gttctctgat gtcgaaggta ggacttcaaa taccccactg      5340
     tgctaccgaa ggaccactac gttacccagc tcatcattga ctcgtaccat cgacggtaca      5400
     aacattccaa cggagaaaca gcagtgaatg aaatgcggca gaaataccac ttgtcggaga      5460
     tgagagcagc atttcggaag atcggcaaat cttgcatgtg gtgcaagatc tacaaggcga      5520
     cacccgcagt tcctagaatg gcaccactac cggaggcaag agtcactccc cgcatcaggc      5580
     cgttcagctt cgttggagtg gattacttcg gcccgctgtt ggtcgtccaa ggtcgtcgtg      5640
     aagtgaagcg atggatcgca ctctttacct gtctgacaat cagggcgatc catctcgaag      5700
     tcgtcaccag tttgtcgacg gagtgctgca agatggcatt acgacgattc atagcacgga      5760
     ggggggcacc ttcggagatc tacagtgatc gggggacaaa ctttgttgga gtcagcggcg      5820
     aattaagtaa gcaagtaaga gcaatcaacc aagagctggc atcgacattc actaatacgg      5880
     tcactcaatg gcgcttcaat cctccagctg caccacatat gggggggtct tgggagcgca      5940
     tggttcggtc ggtgaagtgt gcattggctt cgctatcggt cgagcgcaaa cctagcgagg      6000
     aagtcttggt cacgttgctg gtggaagctg agtcgatggt gaattcgagg ccgttgacct      6060
     acatgccgct ccagacttcg gagcacccgg cacttactcc gaactgcttc ctcatgctga      6120
     gtactagcgg ggtgaaccag ctttcaaccc aacttgtgga cgatagacag gctctacaca      6180
     ccagctggtt cctgtgccag cgcttgctgg accaattctg gacgcgctgg gtgaaggagt      6240
     atctgcccac tatcaccaga cgaaccaaat ggttcgtaga caccagaccg gtctctgccg      6300
     gtgatctggt ggtcatcgtg gatgatagag tccgcaacgg atggataagg ggacaagttc      6360
     tacgcgtgtt ccctggacga gatggcagat gtcgcagtgc aaacgtacag acagcaactg      6420
     gtgtactacg gcgaccggtg gcaaaactag ccgtcctaga tattggtggt aatgctcgag      6480
     aggacacgga gcaatacggg tcggggaa                                         6508
//
ID   BEL-121_AA-LTR repbase;    DNA;    INV; 460 BP.
XX
AC   supercont1.19;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-121_AA_;
KW   BEL-121_AA-I; BEL-121_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-460
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.19; Positions 1554530 1554071.
XX
SQ   Sequence 460 BP; 175 A; 93 C; 72 G; 120 T; 0 other;
     tgttcaggac ggcgcccgat cgtccgaata atttctcacc gtgtacctgc tgccaactgt        60
     gagaaactaa gaaaaaactc catcgatgac ttcgcagccg atcgtttgaa aaacacaaaa       120
     cagtaagaaa cagatagcct actagacaca cacgagaaac acagtttgag acggtcagtg       180
     aataacagtg aaataattta cagattgttg gacaggattc acacaaaaaa gggactaaaa       240
     atgtaagcta aacattaaat ttgttattct acttatatct aaatcatgca aactatgaac       300
     taaattgtaa aatttcctat tcatgcaaaa ttgaacttat gaactatttt tatgcttaaa       360
     actaatgaaa ttaataaatt ttgcagctaa aagcaactcc acaacccaaa atacgagttc       420
     gctctttgga ttgtccgaaa atccatcacc tgtcgcaaca                             460
//
ID   BEL-122_AA-I repbase;    DNA;    INV; 6209 BP.
XX
AC   AAGE02028819;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-122_AA_;
KW   BEL-122_AA-LTR; BEL-122_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028819; Positions   15666    9458.
XX
CC   Positions [4911-5492] - Integrase core
CC   'CAGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(495..4178,4182..5936)
FT                 /product="BEL-122_AA-I_1p"
FT                 /translation="MTLRELTKAERGYFDSLHNVESFVANFDPQRDQSRIA
FT                 SRLEYLETLFKEFRDNRAKVEARQEQDLAASRSGEAVKEVQLTKDMIASNR
FT                 KTRLDFENRYFDVKDFLVSQRINTTAVASSSSSHSSPPGQIPTSRIHLPVF
FT                 KIPSFDGSVKDWLSFRDAFQNTIGKDITLSPLDKFNYLLSVLTKEARTLVE
FT                 SIEVTANNFDVAWQMLEQRFENKKMISRALMNSFLDSEPIKRESYDALVNL
FT                 IDSYERNLLQLRKIGLPTQGWSHLLAHILYTRLDAETQRHWERAHNSREVP
FT                 TYEDLLKFLRDHLATLQPLSLSKPRPTEFRPDQKAQKSKISSTLTTTAAPK
FT                 NVCPHCQKPFHSPFKCNSFINMNPSQRLESVKKAGLCLNCLSSSHLVRACP
FT                 SSACRVCGQRHHTMLHLRPSNNGSSQGQEYSQPQPNKPTLPQGQPQIAPAS
FT                 NNSSTSQSKAFATTPSTSFESSASSHPSVALPASAPSNSSIVLLSTAVVKI
FT                 EDQKGNVQFARALLDCCSERNLLSESLAQKLDLRRQHDPLSLQGVGPSAAT
FT                 SKQSTMATIRSRCTDYVVDLKFHILSEFKPVLPSNRLQTDRWKIPPFVQLA
FT                 DPRFFDPNRIDIVIGAEVYYRLLLEGFVDLGPELPHLKETVFGWIVSGKCD
FT                 ALETSRSAVTLVCCNADLERQLARFWEIESCHADESLSVEERKCETHFTET
FT                 TTRDPSGRFMVSLPKKLDVLENLGESRSIAIRRFMSLERQLHSNPQLMEEY
FT                 EAFAQEYVQLGHMAPINPSNTVLLPSEKIYYMPHHCIVRPDSATTKLRVVF
FT                 DASCATDSGVSLNDALMVGPVVQDDLFSILLRFRIPRFVIVADLQKMYRQV
FT                 LVYPSDRSLQRIVFRSSPVEPIQTYELRTVTYGTASAPYLATRCLQQLASD
FT                 GESTHPKAAKVLSKSFYIDDLLSGVESEEERIELCRQLIDLLRSAGFKLHK
FT                 WASNSPNILRNIPAELREDRSLLELDSSSSPVKTLGLLWQPTEDAFRFKIP
FT                 CWSQEGPITKRLVLSESARLFDPLGLLGPIVLRSKLFMQELWKAKVSWDLP
FT                 LSESQQQFWIDFRSDLNVLDEFSVPRWAASAKEPVQAELHGFSDASESAYG
FT                 ACIYLRMVSNGESVSVHLITAKSRVAPKGTEKLDQLIRLPRLELCGALLLS
FT                 HLFEKVESSLQIQASPFFWTDSTIVVHWLAASPSRWKKFVGNRVAEIQQIT
FT                 ASGTWRHVPGIENPADLIRGMQANELVEHSLWWQGPIWLQQPNRFWPDPVR
FT                 TADDHFEREQLQEKQTVALPAVAQSSIFSLKSSLTSLVRLVAYMQRFCNNA
FT                 KKHNPETRSSGALSTVELDEALVRLVKLAQQESFAQDLHSIRTTGQVKSSS
FT                 KLKALSPVIIDGVLRTRGRLNNAGISFAQKQPMILDNKHPFTLLVVRYYHL
FT                 NRLHAGPTLHTAVIRSKFWPLRLRDLVRKVTHECINCFRNRPTLSEQLMAD
FT                 LPPVRVSPTLPFLNSGVDFCGPFYLRPHSRKAAPLKVFVAVFVCLSTKAIH
FT                 LELVGNLSSESFIASLKRFAARRGVPKTIYCDNGTNFVGAQRALNEFLQLF
FT                 RSQQSRLDITRQCSEEGIQFSFIPPRSPHFGGIWEAAVKSLKTHLRRTLAN
FT                 ALVTAEQFHTLLTQIEALLNSRPLTQLSNSPEDLDVLTPGHFLVHRPLTAI
FT                 PEPSYEELPSNRLSQWQQIQKYLRRLWKRWSTEYLSGLQQRTRWTRARDNI
FT                 RIGTMVLIREDNLPPQKWRFGRVVEVFPGNDGLIRVVSIKTKDGIYKRVVT
FT                 RVCVLPIPDNQPGHDGAAFQTFQVPATQATSDGRGPEGPLTS"
XX
SQ   Sequence 6209 BP; 1546 A; 1653 C; 1457 G; 1553 T; 0 other;
     ttaatggtcc ttcgaggagc cggatttgtg aattttcagt agccaccacg tggcatacaa        60
     agtgatctat tgtgttcagt gataatagca catacagcaa ccagcgtgtt gctttgttct       120
     cccttggtcc atcggcgtcg tttgcgtagc gacgagtgcg gattcgatcg agctatcgaa       180
     tcatcttctg cggacccgtt tcgaaccaag gcacggttca tttgccggac acgaagcact       240
     atcggcgtca cgggacgcgc ttctccccct tctttctgtc tgcggcaaag cggcgtggct       300
     tggattggcg aacaatagct ggtagcgtga ctacaaaaga ctgaggtacg aaaatacact       360
     gtgcatgcga gtttcatttt agtttgtaag gaaattgttt gcgatttacg gattttttgg       420
     gcaattgacc tggctttgtt tttgggattt gagagggttt gcgatttgga tcaatacgaa       480
     taagattcgt cagcatgaca ttgcgcgaat taaccaaagc cgagcgtggg tacttcgatt       540
     ccctacacaa tgtggaatca tttgtggcta acttcgaccc gcagcgcgat caatcaagaa       600
     tcgcttcgcg cctggagtat ttggaaacgc ttttcaaaga gttccgcgat aatcgggcta       660
     aagtggaagc acggcaggag caagatttgg cagcatcgcg ctcgggagag gcagtgaagg       720
     aagtgcagct gacgaaagac atgattgcgt cgaatcggaa gacacggttg gattttgaaa       780
     atcgttattt cgatgtgaaa gattttttgg tttcgcaacg catcaacacg acagctgtag       840
     cgtcgtcctc ctcctcccac tcctctccgc ccggccaaat tcctacatcc cgcattcacc       900
     tcccggtttt caaaatccct tcctttgacg gtagtgtgaa agactggtta agctttcgcg       960
     atgctttcca gaatacgatc ggcaaggaca tcacgctgtc gccgctcgac aaatttaatt      1020
     accttctctc ggtgctcacc aaggaagcta gaactttggt tgagtcaatc gaagttacag      1080
     ccaacaactt cgatgttgcg tggcaaatgc tcgaacaacg gttcgagaat aagaaaatga      1140
     tctctcgcgc gctaatgaac agttttctgg actctgagcc gattaagcgg gaatcgtacg      1200
     acgctctagt caatctcatc gattcgtacg agcgcaatct gcttcagcta aggaaaatcg      1260
     gattacccac ccaaggttgg tcccacttgt tggcccacat actctacaca cgtctcgatg      1320
     ccgaaacaca acggcactgg gagcgggcac acaactctcg agaagtacca acctacgagg      1380
     acttgctgaa gtttcttcgt gaccatttgg caacactgca accgttgtca ctctcgaagc      1440
     ctcgtccaac agagttccgt ccagaccaga aggcgcagaa gtccaagatt agttcgacac      1500
     tcacaacaac tgccgcgcct aagaatgttt gtccacactg tcaaaaacct ttccattctc      1560
     ctttcaaatg caactccttc atcaacatga atccctccca aaggcttgaa tcggtcaaaa      1620
     aagctggttt gtgtctaaat tgtctttcct cttctcattt ggtacgggct tgtcctagct      1680
     cagcttgtcg tgtttgcggc caaaggcatc atacgatgct gcatctgcgc ccttctaaca      1740
     atggatccag ccaaggacaa gagtattcgc aaccgcaacc caataaaccc actctcccac      1800
     aaggtcagcc ccaaatcgca ccagcttcaa acaattcctc tacctcgcaa tcgaaagcat      1860
     tcgccaccac cccgtctacc tcgttcgagt cttccgcctc cagccatccg tcagtcgctc      1920
     ttcctgctag cgcaccgtca aatagtagca tcgttctcct ctcaactgct gtcgtcaaga      1980
     tagaagatca aaaaggaaac gttcagttcg cgagggcact tctagactgc tgctccgaac      2040
     gcaacttact cagcgaaagc ttggcgcaaa aactggatct tcgccggcag cacgatcccc      2100
     tttctctgca aggcgttggg cctagtgctg caacatcgaa gcaatcgacg atggcaacca      2160
     tccgttcacg ctgtacggat tacgtagtcg atctcaaatt ccatatactg tcggaattca      2220
     aacccgtctt gccatcaaac cgtttgcaga cagatcgttg gaaaattcca ccattcgttc      2280
     aactcgccga tcctcgcttc tttgatccca atcggatcga cattgtcatt ggagctgagg      2340
     tttactatcg cctactacta gaaggatttg ttgatcttgg accagaactt ccccatctaa      2400
     aagaaaccgt ttttgggtgg atagtttccg gtaaatgcga cgcgttggag acaagtcgtt      2460
     ccgccgtcac tctcgtctgc tgcaacgcag atttggaaag gcagcttgct cgcttctggg      2520
     agatcgagtc ttgtcacgcg gacgagtccc tctcagtgga agaacggaaa tgcgaaaccc      2580
     actttaccga aactacaact cgagatcctt caggacggtt tatggtttcg ctaccaaaga      2640
     aactcgatgt tctcgagaac cttggagagt ctcgaagcat tgccattcgt cgtttcatgt      2700
     cgcttgaacg tcaacttcac tcgaatcccc agctgatgga agaatacgaa gcgttcgcgc      2760
     aagagtatgt tcaactaggg catatggcac cgatcaaccc tagcaataca gtcttgctgc      2820
     ctagcgagaa aatttactac atgccgcatc attgtatcgt tcgtccggac agcgccacga      2880
     cgaaacttcg cgttgtattt gacgcctcat gcgccaccga ttctggtgtc tcattaaacg      2940
     acgctctaat ggtgggcccc gtcgttcaag acgatctgtt tagtattctc ctgcgcttca      3000
     gaatccctcg tttcgtcatt gttgctgatc tgcagaaaat gtaccgacag gttttggtgt      3060
     atccctcgga tcgctcactc cagcgcatag tttttcgttc ctcaccagtt gaaccgatcc      3120
     aaacctacga gttgcggacg gttacttatg gtactgcatc ggcaccgtac cttgcgaccc      3180
     gttgcctcca gcaactggca tccgacggtg aatcaactca tcccaaagcc gccaaggtgc      3240
     tgtcgaaaag tttctacatc gacgatctgc tttctggggt agagtctgaa gaagaaagaa      3300
     tcgaattgtg caggcagttg atcgatctcc tacggtcggc tggattcaaa ctgcataaat      3360
     gggcgtcaaa cagccccaac atactccgaa atattcctgc tgagcttcga gaagatcgca      3420
     gtcttctaga actcgattcg tcgtcgtccc cggttaaaac cttgggcttg ctatggcaac      3480
     caaccgaaga cgcttttcgc ttcaaaatcc cttgttggtc gcaagagggt cccatcacca      3540
     aaaggttggt gctttccgaa tcggctcgct tgttcgatcc actgggccta ttggggccaa      3600
     tcgttcttcg ctccaagctc ttcatgcagg agctgtggaa agcgaaagtt tcctgggatc      3660
     ttccattgag tgaatcacaa cagcagtttt ggatagattt ccgaagcgac ctcaatgtcc      3720
     ttgacgaatt ctccgtccca cggtgggcgg catctgcaaa ggaacccgtg caagctgaac      3780
     tccatggctt cagcgatgcg tccgaaagcg cgtacggcgc atgcatttat cttcgcatgg      3840
     tttcaaatgg tgaaagcgtc tctgtgcact taattactgc aaagtctaga gtggcgccta      3900
     agggaaccga aaaattggac cagctcatac ggttgccgcg tctcgagctc tgtggagctc      3960
     ttctcttgag ccacctattc gagaaggtgg aaagcagttt acaaatccaa gcaagtccat      4020
     tcttttggac tgattctacg attgtcgtgc actggttagc ggcatcaccg tcccgctgga      4080
     agaaatttgt tggaaatcga gtagcagaaa tccagcagat cacagcttct ggtacatgga      4140
     gacacgtacc gggcattgag aaccccgcag accttatcta gcggggaatg caagcgaatg      4200
     agcttgtaga acactcgctg tggtggcagg gacccatttg gctacaacag ccgaatagat      4260
     tttggcccga ccctgttaga acagcggatg atcatttcga acgagagcaa cttcaagaga      4320
     aacaaactgt tgcccttcct gcagttgctc aaagcagcat attttctttg aagtcgtcac      4380
     taacgagttt ggttcgtctg gtcgcctata tgcaaagatt ctgcaacaat gcgaaaaagc      4440
     acaacccgga aactagaagc agcggagccc tatcgacagt tgaacttgat gaagcgttag      4500
     tgagactggt aaagctcgcc cagcaagaat cgtttgcgca agatctgcac tcgattcgca      4560
     ccaccggcca agtgaagtct tcatccaaac tgaaagcttt gtcgcccgtg attatcgatg      4620
     gcgttcttcg tacaagaggt cgcctcaaca acgcaggcat atcgtttgct caaaagcagc      4680
     caatgattct ggataacaag cacccattca cccttctggt tgtgcggtac tatcacctga      4740
     atcggctgca tgcgggccct acacttcaca ccgccgtcat tcggtcaaaa ttttggcctc      4800
     tccgactacg agatctagtg cgcaaggtca cccacgaatg cattaattgt ttccgcaacc      4860
     gaccaacctt gagcgagcaa ttgatggcgg acctaccacc cgttcgagtg tcaccgacac      4920
     tgccattctt gaactccgga gtagacttct gcggtccttt ctacctccga ccacattcaa      4980
     gaaaggctgc gccactgaag gtgttcgtag cagtttttgt ttgtctctca accaaggcaa      5040
     ttcacctgga attggtaggc aatttatcat ccgagtcgtt catcgcttca ttgaagagat      5100
     tcgctgcgcg tcgaggtgtt ccaaagacca tatattgcga caacggcacc aattttgtag      5160
     gtgctcaacg agcgctaaat gaattcctgc aactgttccg atctcaacag agccgattgg      5220
     acatcactcg acaatgctcc gaagagggca tacaattttc ctttatacca cccagatcac      5280
     cacacttcgg tggcatctgg gaagccgcgg tcaagtcgct aaaaacgcac cttcgccgca      5340
     cactggccaa cgccttggtc accgccgagc aatttcacac gttgcttacg caaatcgagg      5400
     cactgctcaa ctctcggccg ctgacgcagc tgagtaactc tccggaggac ttggacgtcc      5460
     tcacgccagg tcatttctta gtgcatagac ctttgaccgc aatccccgag ccctcctacg      5520
     aggagctacc cagtaaccgg ctttcacagt ggcagcaaat ccaaaaatat ctccgtcgtc      5580
     tttggaagcg ctggtcaaca gagtatctgt cgggactaca gcaacgaacc cgttggacgc      5640
     gagcacgcga caacatccgt atcggcacga tggtgttgat ccgtgaagat aatctgccgc      5700
     cgcagaagtg gcgtttcggc cgcgttgttg aagtatttcc cggcaacgat gggctcatcc      5760
     gagtcgtcag catcaaaact aaggacggca tctacaagag ggtagtcact agagtctgcg      5820
     tcctgcctat cccggacaac caaccgggcc acgatggggc agcgttccag acgttccagg      5880
     tgccagcaac acaagcgacg tcggatggga ggggacctga aggtcccctc acaagttaag      5940
     tatccctata tttttgctgg attttgtctg ccccgaccta aagtctaccg ttttgacagg      6000
     tttcctggag tttggcaact caaccgtagg tcgacgtgcg agttccgatc gaggaaccaa      6060
     caaccgttgg tcaaggagtc gtagtcaaat attgcagctg agttaaattt ttgaattgta      6120
     ttttgatcat acttcattaa tacgttagta agttaagtat tcacagttag gtagtaagat      6180
     tgaaatccag atttcaatgg tgggcggta                                        6209
//
ID   BEL-122_AA-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   AAGE02028819;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-122_AA_;
KW   BEL-122_AA-I; BEL-122_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-371
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028819; Positions    9457    9087.
XX
SQ   Sequence 371 BP; 111 A; 95 C; 64 G; 101 T; 0 other;
     tgttagggca caggccgtta tatttgtaat taccctaatg tatggaactc agacactcaa        60
     tctcaatcaa cttcatatca tataaagcgg agaagagtaa cgtagatttt aagctctttc       120
     tgtctaacac ttaactctca ctaccgatca ccagtatcgg cagttagaat acctatcagt       180
     tgaataaaac cgttcaaaca gtgtacatgt gatcctctat cgctcgcaag aatcgtccga       240
     gtaccctcag ttcagtgtaa acctcctacc actattaatt cgtcgcgatt tcgttttcgg       300
     tgctaaaacc acatcctaag gtcactttac gccgcgagtg aaccacgaat ccggagaacc       360
     agctccgaac a                                                            371
//
ID   BEL-123_AA-I repbase;    DNA;    INV; 5559 BP.
XX
AC   AAGE02026663;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-123_AA_;
KW   BEL-123_AA-LTR; BEL-123_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5559
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026663; Positions    6411     853.
XX
CC   Positions [4595-5176] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..5557
FT                 /product="BEL-123_AA-I_1p"
FT                 /translation="MAAERKASILSFQRTLQALKQRANKILTFVASFKDGD
FT                 DPLQLEIRRTGLEDMRESFFETETKLYGLIKDDEVSAVELAAEEYYDLLGE
FT                 ITYQIAAKLKPLSNPSEAKPHLDTSVSQKPFPDSSIKLPDITLPRFSGHYE
FT                 EWIYFRSQFNLLIRRNESLNDQQRLHYLRSCLTGEAAGIETPEESFSSLWK
FT                 ALETRYENRRWLVDRHLAEIFQLKSIPCESSTALRDLVNVVQKNLRALSSL
FT                 KLNLDTLSESMVVHIVASKLDKQTHKDFQSQIVGTNLVKWQEMVEFLQNRC
FT                 RILENLEQDNKLASRVVSKSVGTKQFPKVFVSSKEDDSKRRFACFHCSGGH
FT                 YINECRSFLAKSPSQRFQRVKELRLCVNCFSNRHVVADCKSSSCKDCGQRH
FT                 NTLLHFEPKASSNLSGRPKINQNTRSDNGGNESAPEPGPSRVELCAVTEVV
FT                 DVIESTNMVETIVPEPDAFRTPSSLSSTRATKRVQLITATDQALLHTAIVN
FT                 VRGEDGELQECRAVLDSCAMSTFMTSACVQKLRLKAFPSDVSVVGFGGAGR
FT                 KIAEAVVAHVSSKCSYFDSISEFLVTPNITTKLPLRPFKYSHWNIPEWIDL
FT                 ADPNFNQPARVEILFGILDWDKMMLSRSYKLADSLPTLRQTVFGWVAGGPV
FT                 MERSSYPIVQALPITNEQLDDQLSKFWELEAYGQERIYCSDEQKAEEHFSS
FT                 THYRDESGRYVLALPFKDTDVKLGDSKHMAHRRFLLLEKRLEKDEHLYSEY
FT                 RKFMQEYLDMEHMEKVGTFSPVEQSTEECYFIPHHAIQRPDSSTTKVRVVF
FT                 DASAKSSNGVSLNDLLLVGPTLQPHLVNILLAFRVHKVVATTDVSKMFRQI
FT                 SIREEDRRFLHILWRSSPEEEISVYRLTTVTYGTACAPFQATRTLLQICDD
FT                 EAEKFPLAAQFGKKSVYVDDALFGAETVEEVQKMRKQFEAMLATAGLELHK
FT                 WCSNREEVLADLPTEKLEQKVLFSEEGRTKTLGLTWQPTQDIFSFQIPSAA
FT                 FSEGVPSKRKVLSDISKLFDPLGFAGPVVMTGKLLMQELWKQKQSWDGALD
FT                 AKQEKLWYEYRRQLQEMETIKISRCVLPLSNTISVDLLGFSDASEKGYGAC
FT                 LYLRSRNIQGQISIRLLCSKSHVAPLKANRATIPRLELCGAVLLAQLVDQV
FT                 IRSLPVDIDQIKLWSDSTIALSWINTCPSKLDVFVANRVTKILRITKPTNW
FT                 YHVSGHENPADLVSRGIMPNELESARLWWRGPLFLKDPETTWYKNVNLITE
FT                 DELPELTTITTRPVVTERFQLFDNSSKYNTMVRVVARIKRLFQNRKRGPDH
FT                 QFRGEYTMQELRLAKLTLVRLVQKEAYPEVFDQLQNQVTTRNNSLIPLSPF
FT                 VDNHGILRVGGRLSKSSCSYDQKHQMILPSSHPFTEAVIRSVHTSNMHVGA
FT                 QTTLNAIRREYWIVRGKSAVKRVIRGCVRCFKTSARPIHQYMGDLPSCRLE
FT                 AEYPFYRVGIDLCGPIPIKQRNKRSTVEYKGWIVLFVCLETKAIHLEIVSE
FT                 LSTGAFMAAFDRFISRRGKPATVWTDNGTNFVGTSNVLKEWKEFFESSETQ
FT                 EGIQQASDSEIEWCFNPPEAPHFGGIWEANIRQTKSLLIKYTAGATLCFEE
FT                 LSTVLARIEAVLNSRPITSLSDDPEDFEPLTPGHFLIFRPLTAIPRPEVSL
FT                 GSKHPRSRFEHINHIVKHFWDRWSSEYLSSLQQRYKWHKKVEVKQGQLVLI
FT                 KKDNLPIQKWLLGRIVELFPGTDGVTRVVNVKTKNGILRRSVSKLCFLPVD
FT                 PEQTVGRDVFQRGE"
XX
SQ   Sequence 5559 BP; 1540 A; 1331 C; 1320 G; 1368 T; 0 other;
     ttaaaaaggt ccttcgaacc ggatctggct gaggcggcat ccgtcggaaa aggagagcta        60
     aggtaggtgg atcgttttga gccagagcaa gcgcgttgaa tatatcatcc gaatagaatc       120
     gtgtgccatt ttgtgctact gaccttgaat gcgatagcgt cgtttctttt gtctttaata       180
     cacaaccaat tgctatttca aaatggctgc tgagcgaaaa gcttccattt tgtcgttcca       240
     aagaacgctt caagcactga aacaacgtgc taacaaaatt ttgacctttg ttgcctcctt       300
     caaggacggt gacgacccac tgcaacttga aattcgcaga actggtttag aagacatgcg       360
     tgaatccttt ttcgaaaccg agaccaaatt gtacggttta attaaagatg atgaagtttc       420
     ggcagttgaa ttagctgcag aagaatatta tgacctcttg ggggaaatca cgtatcagat       480
     cgctgcaaaa ttgaaacctc tctcgaaccc ctcagaagca aagcctcatc tcgatacaag       540
     cgtttcccaa aagcccttcc ctgattcgtc catcaaacta ccggatatta cgttgccacg       600
     tttcagtggc cattatgaag agtggattta tttccgaagc cagtttaacc tcttgatccg       660
     ccgaaatgaa tccctcaacg atcaacaacg attgcactat ctgcggtctt gtctcaccgg       720
     tgaagctgcg ggaatcgaaa ctccggaaga atcgttttcg tctctatgga aggcgttgga       780
     aacaaggtac gagaatcgcc gctggttggt agaccgccat cttgccgaaa tctttcaatt       840
     aaagtccatc ccatgtgaat cttctaccgc tctgcgtgat ctggtgaacg tcgtacagaa       900
     aaatcttcga gccttgtcct ccttgaaact gaatctcgac acgctttcgg aatcaatggt       960
     agtccacatc gtcgcttcca aactcgacaa gcagacccac aaagacttcc aatctcaaat      1020
     tgtcggtacc aatcttgtca aatggcaaga aatggttgag tttctgcaaa atcggtgccg      1080
     catattagaa aatctggaac aggacaataa attagcttct cgtgtggtca gtaaatctgt      1140
     gggcaccaaa cagtttccga aggtttttgt cagctcaaag gaggatgatt cgaaaaggag      1200
     gtttgcttgt ttccattgtt ctggtggcca ttacatcaac gagtgtcgtt ctttccttgc      1260
     aaagtctcca tcgcaacgtt tccaacgagt aaaagagctt cgattgtgtg tcaattgttt      1320
     tagcaaccgc catgttgttg ctgattgcaa gagtagctcg tgtaaggatt gcggtcaacg      1380
     acacaatacc cttctccatt ttgaaccgaa agcgtcgtcc aacctgagcg gcagaccaaa      1440
     gatcaaccag aatacgagat ccgataacgg aggtaatgaa tcggcgccag aacctggacc      1500
     aagccgtgtc gaactgtgtg cggtaacgga agtcgtcgat gtgatcgagt ccaccaatat      1560
     ggtcgaaaca attgtgcctg agccagatgc gtttcgtacc ccaagcagct tgagttcgac      1620
     tagggcgacg aaaagagttc aattaattac cgctactgat caagcgcttc tgcatacagc      1680
     gatcgtgaat gttcgtggtg aggatggtga attgcaagag tgcagggctg tgctggattc      1740
     ctgtgcgatg tctacgttca tgacaagtgc ttgtgttcaa aaactacgtc tcaaggcttt      1800
     tccatctgat gtttctgtgg ttggttttgg aggtgcaggt cggaaaattg ctgaggctgt      1860
     cgtcgcacat gtgagttcga aatgctccta cttcgattcc atctcggagt tcctagtaac      1920
     accaaacatt acgaccaagc tgccattgag acctttcaaa tactcgcatt ggaatattcc      1980
     ggagtggatc gatctcgcag atccaaactt caaccaacct gctcgtgtgg aaattctctt      2040
     cgggattctg gattgggaca aaatgatgct aagtcgaagc tataaattgg cagacagtct      2100
     gcccaccctt cgacaaacag tttttggttg ggtagctgga ggcccagtca tggaaagaag      2160
     ttcctacccc atcgtgcaag cgctcccgat aacgaatgaa cagctggacg atcaactttc      2220
     caagttttgg gagctagaag cctacggaca agagcgaatc tactgtagcg atgaacagaa      2280
     ggctgaagaa catttctcct cgactcatta tcgagacgaa tctggtcgtt acgtcctcgc      2340
     tttgccgttc aaggacactg atgttaaact tggcgattcc aagcacatgg ctcatcgaag      2400
     gtttcttctt ctcgaaaaaa gactggaaaa agacgagcac ttatactccg agtaccgcaa      2460
     atttatgcag gagtatctcg acatggaaca catggagaag gtgggaacgt ttagtcccgt      2520
     cgaacaatcc accgaagaat gctatttcat cccccaccat gcgatacaac ggccagatag      2580
     tagtactaca aaggttcgtg tagtttttga cgcgtccgca aagagcagca atggagtgtc      2640
     tttgaacgat ctgctgctag tgggaccgac actacagccg catctggtca acattttgct      2700
     cgctttccgt gtacacaagg ttgtcgcaac cactgacgtt tcgaaaatgt ttcgacaaat      2760
     cagtattcga gaagaagatc gtcgtttttt gcacattttg tggaggtcca gtcccgagga      2820
     agaaatcagc gtctatcgac tcaccactgt gacgtatggt acagcttgcg ctccttttca      2880
     agccacccgc acgctgctcc aaatttgcga tgacgaagcc gaaaaattcc ctctggcggc      2940
     acagtttggg aagaaatccg tctacgtaga tgatgcattg ttcggtgcag aaacggtcga      3000
     agaagtccag aaaatgcgga aacaattcga agccatgttg gctacagctg gccttgaact      3060
     gcacaaatgg tgttcgaatc gagaagaagt tttggcggat ctacctaccg aaaaactgga      3120
     gcagaaagtt ttgttcagcg aagaaggtcg tacgaaaacc cttgggttaa cttggcaacc      3180
     cactcaagac atctttagct tccaaattcc atcggcagcg tttagtgaag gagtcccctc      3240
     aaagcggaag gtattatcgg acatatccaa gttgttcgac ccgctaggct tcgccggacc      3300
     ggtagtgatg acagggaagt tgctgatgca agagttatgg aagcagaaac aatcttggga      3360
     tggagcacta gacgctaagc aagaaaaact gtggtacgag tatcgacgtc aactacaaga      3420
     aatggaaacc atcaagatca gtcgttgtgt gttacctctg tcgaatacga taagtgtcga      3480
     tcttttgggc ttcagtgatg catccgaaaa gggctatggg gcttgcttgt atctaaggtc      3540
     acgaaatatt caaggtcaaa tttcaattcg gttgttgtgt tcaaaatcgc atgtagcacc      3600
     tctcaaggca aaccgtgcca cgattccgcg cttagaactt tgcggagccg tattgctcgc      3660
     tcaattagtc gaccaagtta tacgatccct accagttgac atcgatcaaa tcaaactttg      3720
     gagcgattca acaattgctc tcagctggat taacacctgt cccagcaaac ttgacgtttt      3780
     tgttgccaat cgggtcacca aaatattgcg gatcacaaag ccaacgaact ggtatcacgt      3840
     cagtggtcac gaaaatcccg ccgacttagt atcgcgcggt atcatgccaa acgaactcga      3900
     atccgcaagg ctctggtggc gaggtcctct gttcctgaaa gatcccgaaa caacctggta      3960
     caagaacgtt aatttgatca ccgaagacga acttcccgag cttactacga tcactacaag      4020
     gcctgtggtg acagaaaggt tccagttgtt tgacaacagc agcaaataca acaccatggt      4080
     tcgagttgtt gctcggatca agcgcctgtt ccagaatcgt aagagaggtc ctgatcacca      4140
     gtttcgaggg gagtacacca tgcaggagct tcggctagcc aagctgacac tagtgcgtct      4200
     cgtccagaag gaagcttacc cggaagtatt cgaccaattg cagaatcagg taacgacaag      4260
     gaacaattcg ctcatcccgc tctccccctt cgtagacaac catggcatcc tcagggtcgg      4320
     tggacgccta tcgaagtcat cctgctccta tgaccaaaaa caccagatga tccttccttc      4380
     aagtcaccct ttcaccgagg cagtcatccg ttcagtgcat acgtccaaca tgcacgtggg      4440
     cgcccaaaca actctgaacg ccattcgaag ggagtactgg attgtccgtg gaaaaagcgc      4500
     cgtgaaaagg gtcatccgag gatgcgtccg atgcttcaaa accagcgctc gcccgattca      4560
     tcaatacatg ggagatttgc catcttgccg tctcgaagca gaatatccgt tctatcgggt      4620
     tggcatcgat ttgtgtggac caattcccat caaacaacga aacaaacgat cgaccgtgga      4680
     gtacaagggc tggatcgtac tctttgtctg tctagaaacc aaagcgatcc acctcgaaat      4740
     cgtcagcgag ctatcaaccg gcgcattcat ggcagcattt gaccgattca tcagtcggcg      4800
     aggcaaacca gcgactgtgt ggaccgataa cggtaccaac tttgtcggta catcgaacgt      4860
     tctgaaggaa tggaaggagt tcttcgagag cagcgaaact caggaaggca tccaacaagc      4920
     aagtgactcc gaaatcgagt ggtgtttcaa ccctccagag gcaccacatt tcggaggaat      4980
     ctgggaggcg aacattcgac agaccaagtc cctgctaatc aagtacactg ctggagcaac      5040
     tctgtgtttc gaggaattat cgacagtatt ggctcgtatc gaagccgtgc taaactcaag      5100
     acccataact tcgctgtcag acgatccaga agatttcgag ccattgacac cgggtcactt      5160
     tttgatcttt agacctctaa ccgcaattcc ccgaccggag gtcagtcttg gttccaaaca      5220
     tccaaggtca cgtttcgagc atatcaacca catcgtcaaa cacttttggg accgatggag      5280
     ctcggaatat ttatcgtcgc tgcagcaaag atacaagtgg cacaagaagg tcgaagtaaa      5340
     gcaaggacaa ctggtgctta tcaagaagga caacttgcca attcaaaaat ggttgcttgg      5400
     tcgcattgtt gaactgttcc caggtaccga tggagtaaca agagtggtca acgtgaaaac      5460
     gaaaaatggt atattgcgaa gatctgtttc gaagttatgc ttcctcccag tcgaccccga      5520
     gcaaacagtt ggaagagacg tcttccaacg gggggagga                             5559
//
ID   BEL-123_AA-LTR repbase;    DNA;    INV; 732 BP.
XX
AC   AAGE02026663;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-123_AA_;
KW   BEL-123_AA-I; BEL-123_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-732
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026663; Positions     852     121.
XX
SQ   Sequence 732 BP; 221 A; 151 C; 168 G; 192 T; 0 other;
     tgttcaatgc aacggtagca acaatcagtg agtctaccct aacaacagtc acgagcgtcg        60
     aggtatataa tcgtacaccg cagtaacgaa cgcaagagta tcgaccgtca tcagcatcat       120
     cgccgtcatc gtattcgtgt ttcgaacacc cgtcggcagt catcgagcgt cggatgtgat       180
     cgagctagct agcgttatat gtatacgaag acgaaaccgg ttaaaagtaa atacttatgt       240
     actttgtctc tcatacttga cacaagcaat gctttgtgaa tccccatgta taaatttgtg       300
     cgcacaaaac caaatacatg atcagtttag tatagttcgt cgtggaatca actgcgtttt       360
     attttccgtc cgagtcgaaa gaagtttctt gtcggtcgct gagtgaattc tagtttcgag       420
     aacagtgaag tgcccaattg gcctaatttt cctagttttg gagaaattgt gtatcgaact       480
     ttggacattg tgacgaactt tagtgcgatt agaaactccc gtgagcacga tcgagtgctc       540
     tggagatttc tggaagaaat tagtgtcgga acaaaggaac aagaacaaaa ttagtgtcga       600
     aacaaaagaa caaggactgt gacgaatcag tacgaaagtt taataaagtg aatcgcctac       660
     ttggccagtg tgaatcagtg caaataggcc ccaccacttt cgaggagccg gacagtgacg       720
     acgtcttgta ca                                                           732
//
ID   BEL-124_AA-I repbase;    DNA;    INV; 6364 BP.
XX
AC   supercont1.251;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-124_AA_;
KW   BEL-124_AA-LTR; BEL-124_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6364
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.251; Positions 1417270 1410907.
XX
CC   Positions [5359-5976] - Integrase core
CC   'ACTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..6330
FT                 /product="BEL-124_AA-I_1p"
FT                 /translation="MPSRGCIRSGVKGDKGARKKSDEGGAVGGQSAGDDEI
FT                 PEVLVVDETLEGYSCKTCREADTKEMVQCDKCDKWFHFSCVGVSGDIADKS
FT                 WSCTNCVTATWIQRTKAALENVTKRDDDNLDRKSTKSQPIGSIATSTRANL
FT                 VIPSEVHNTASLDRNLVNSMHKPPTEVASGQTNPDQQKQQSDRANRIADVS
FT                 AVDAAKALSEISFSSSQKSAVSRAKLRLMRLQEERDFQQQQEERRKIAEEK
FT                 AAQEHRTYLEEKYRILEEALSEKGSRRSEGGSKSCSDASSRVSEWIQRARQ
FT                 VQQIQPEVDVIRSLQFPIGSSTEPTHASGRFGQQRIRFEPSAQTGLGSHAE
FT                 TGQRINQAFHSAAETITATGQPSQSRLSNHFRQEVLQTNPVGNPFASSTRP
FT                 PFNSTTFDGQVLAPPACSTGVNQQNLPSGVRASQRSFQEESQDEFQLSRSQ
FT                 VAARQAVPRDLPTFSGNPEEWPVFLSMFNRTTTMCGFTEEENLVRLQKSLK
FT                 GKAYEAVKSRLMFPGNVSGILATLRMLFGQPEVIVQSLIEKVSSLPAIRED
FT                 KLDSLVDFAVHVQNFCATVDACGLQEYMYNVTLLHQLVSKLPPSLKLNWAQ
FT                 YRLTMAAVNLATFSSWIYALAEAASIVSFPPSVQPEKPRNEIRGSKKGNGY
FT                 LNAHSETPSSEENIETSPKELSTLKPVPAKQVCPICNGSCKSADKCKRFVD
FT                 LSREARWAAIREFSLCRTCLRMHKGNCNGKPCGKNGCTYRHHELLHNDSKD
FT                 KPQKTAAAVATGNESEPTALPCSNLSGCNTHRSVASTVLFRYLPVVLYGKT
FT                 TVVRTHAFLDEGSELTLLDQEIADILELEGAERPLCLRWTGGTERCEPNSQ
FT                 AYNLQISGAKEGSKRFDLNDVRTVKDLKLPQQTMDMVKFGKEYPHLRDLPI
FT                 DSYRDIRPRILIGTKHAHLGLVLKSREGEFGQPIAVKSRLGWTICGGQGAD
FT                 RGDNLHHYSFHICPCNTEADENLHQAMKDYFSLDSLGVTKPCKPMLSIEDQ
FT                 RAMTLLQSLTHRRDDRYESGLLWRYDDSCLPDSRSMALRRLQCLRKRMERE
FT                 PDLRTTLQTKIEEYLAKGYIRLLSEEEINEKVPRRWYLPVFPVTNPNKPGK
FT                 IRIVWDAAASAHGTSLNSALLKGPDLLCSLLTILLQFRERRIGLTGDIREM
FT                 FHQVLIRAEDQFCQCFYWLNQNGETQVYVMQVMTFGACCSPTTAQFVKNTN
FT                 ADRFVNEYPSAHQAITKSHYVDDMLVSLDTEEQAIQLAKDVRHVHKQGGFE
FT                 IRNWISNSIVVLAALQETDTDEKCLDLSSELATEKVLGMWWNTTDDIFIYK
FT                 VGWNRYDPALLGGERRPTKREVLRVLMTIFDPLGLISHFLSYLKILLQQIW
FT                 RSGVQWDEEIDDDAYDKWLTWLKVLPCVEQVRIPRCYNSKYLMSEADEVQL
FT                 HTMVDASENGTAAVCYLRFIREASVSCSIVAAKCRVAPLKFTSIPRLELEA
FT                 AVVGARLSRSVQESLTFRIHRKLYWSDSRDVLCWINSDHRRYSQYVGHRIS
FT                 EILETSEAQEWRWVPGKKNPADDATKWNSLPELSSEDRWFKGADFLWRPEA
FT                 DWPTMHSRHDSTDTELRPSLLAHHAPPEPVICVNNFSTWERLRKVVAYVHR
FT                 FFNNCRHKRRGKTTETGPFSVKQLLIADTFLIQLCQREAYPDEIAVLQNTP
FT                 QRPETTKTIPKTSALYQLTPWLDGNGIMRMRTRIAACHYASDDAKNPIILP
FT                 HKHHITHLIVAHYHRKYHHQNHETVINEIRQKFRIPRIRVCYQQVRRDCQQ
FT                 CKNQRAAPNPPFMADLPPARLAAFSRPFTHVGIDYFGPVEVTVGRRVEKRW
FT                 ILLATCLTIRAIHLEVVHSLNTSSCIMAFRNFMARRGTPQKVYSDRGTNFV
FT                 GANKVLKEVNEVMNEREFMNEFGKSAIEWVFNPPLTPHMGGSWERLIRTVK
FT                 NNLAVVCLSARPSDEVLRNLLTEIENTVNSRPLSHVPIDDDSAPALTPNHF
FT                 LLGSSNGSKPLTDIDDSSAALRQNWLTSQILANQFWKRWVTDYLPEITRRS
FT                 KWFQRPQPIAVGDIVVIADPKLPRNCWPTGKIIAAKVSRDGQVRSATVRTS
FT                 SGIYDRPATKLAVLDVRCDGE"
XX
SQ   Sequence 6364 BP; 1765 A; 1636 C; 1593 G; 1370 T; 0 other;
     tcatataatt ttcgtttaac gaacaaacta agcaagatgc ctagtcgcgg ttgcattaga        60
     tcgggtgtga agggagataa aggcgcgcgc aaaaagtctg atgaaggtgg tgcggtcggt       120
     ggtcaaagtg ctggtgatga tgagattcca gaggtgttag ttgtggatga aactttggaa       180
     ggatattcgt gtaagacgtg cagagaagcg gacaccaagg agatggtgca gtgtgataaa       240
     tgcgacaaat ggttccattt ctcatgtgtg ggcgtttctg gagacattgc cgacaagagc       300
     tggagttgta ctaactgcgt tacagcgaca tggatccagc gaactaaggc agctctggaa       360
     aacgtaacta agcgggatga tgacaaccta gatcgcaagt caactaaaag ccagcccatc       420
     ggaagcatcg ctacgagtac acgtgccaac ctagtgattc cttcagaagt tcacaacact       480
     gcctccctgg atcgaaatct tgtcaacagt atgcataaac ctccaacaga agtggctagc       540
     ggtcaaacta atcccgacca gcagaagcag cagagtgaca gagctaatcg aattgcagat       600
     gtttcggctg tggatgctgc taaagcactg tcagaaattt cattttcttc gtcgcagaag       660
     tcagcggtga gccgcgcaaa gctgcgactg atgcgactac aagaggaaag ggatttccag       720
     cagcagcaag aagagcgtcg taaaattgcc gaagaaaaag cagcacaaga gcatcgaacg       780
     tatttggaag agaagtaccg tatactggaa gaggcgttga gcgagaaagg atcacggagg       840
     agtgaaggag gatcaaagag ctgcagtgat gcgtcaagcc gagtgagcga atggatacag       900
     cgggccaggc aagtacagca gatccagcca gaagtggatg ttattcgtag tctacaattc       960
     cccataggca gtagcacgga gcctacccac gctagcggtc gcttcggaca gcaacgaatt      1020
     cgcttcgaac caagtgcaca aactggtctc ggcagccatg cagaaactgg ccaacgcatc      1080
     aatcaagctt ttcactcagc tgcagaaacg atcacagcta caggacagcc atcgcagtcc      1140
     agattgtcca atcattttcg tcaggaagtg ctgcaaacga atcccgtcgg caatccattt      1200
     gcatcgtcaa ctaggcctcc attcaattcc actacctttg atggacaggt cctagccccg      1260
     ccggcttgtt ctaccggtgt taaccaacag aatcttccaa gcggtgtccg cgcatcccaa      1320
     agatcgtttc aagaggagtc tcaggatgaa ttccagcttt ccaggtcaca agtggcggcc      1380
     agacaagcag tcccgaggga tttgccaaca ttttccggaa atccggaaga atggcctgta      1440
     tttctgtcaa tgttcaatcg tacgaccacg atgtgcgggt tcaccgagga ggagaaccta      1500
     gttcggctgc aaaagagcct gaaaggcaag gcttatgaag cagtcaagag ccgtctgatg      1560
     ttccccggaa acgtttcagg cattctggct accttgagaa tgctgtttgg gcaacccgaa      1620
     gtcatcgtac agtcgctaat cgaaaaagtc agctctttac cagctattag agaagataag      1680
     ttggattcgc tagttgattt cgccgtacac gtgcaaaact tctgtgccac cgtagacgcg      1740
     tgtggattgc aggagtacat gtacaacgtc acgttgctcc atcagctggt cagcaagttg      1800
     ccaccatcgc tgaaacttaa ttgggcacaa taccgtctaa cgatggctgc cgtcaacctg      1860
     gcaaccttca gtagctggat ctatgccttg gcagaagctg caagtatcgt cagctttcca      1920
     ccgtcggttc aaccagaaaa gccccgcaat gagattcgcg gctccaagaa aggaaatggg      1980
     tatctcaatg cccattcaga gacaccgtcg tccgaggaga acatagaaac ttcgccaaaa      2040
     gaactctcga ccttaaagcc agtaccagcg aaacaagtct gtccaatttg taacggcagc      2100
     tgcaagtccg ccgataagtg taagcgcttt gtggacctat ccagagaagc gcgatgggct      2160
     gcaataagag agttcagcct atgccgtacc tgtctgcgga tgcacaaggg aaactgcaat      2220
     ggcaagccct gcggtaagaa tgggtgtacc taccggcatc atgagttgct gcacaacgat      2280
     tcgaaggata aacctcaaaa aaccgcagca gcagtcgcaa ccggaaacga aagtgagcca      2340
     actgctttac cctgttccaa cctatccgga tgcaatactc atcggtctgt tgccagtaca      2400
     gtgctgttcc gctaccttcc agtcgtattg tacggtaaga cgacagtagt tcgcacgcac      2460
     gccttcttgg acgagggctc agagctcacc ctgcttgatc aagagattgc tgatatatta      2520
     gagttggagg gtgccgaaag accactatgc ctacggtgga cgggaggaac tgaacgctgt      2580
     gaaccgaatt cccaagctta caatctacaa atctctggag ccaaggaagg cagtaagcgg      2640
     ttcgatctca acgatgtgcg aacggtgaag gacctaaagt taccgcaaca aacgatggac      2700
     atggtcaaat tcggcaagga atatccacat ctccgagatt taccaatcga ttcctaccga      2760
     gatatacggc cgcgtatact tatcggaacc aaacacgcac atcttggcct cgtcttaaaa      2820
     agccgagaag gagagtttgg gcagccgatt gcagtcaagt caaggctggg atggaccatc      2880
     tgtggagggc aaggtgctga tcgtggagat aatttgcacc attacagctt ccacatatgt      2940
     ccgtgtaata ccgaagcaga cgaaaatctt caccaggcaa tgaaggacta cttctctctc      3000
     gatagccttg gagttactaa accgtgcaaa ccgatgctat caatcgaaga tcaacgggcc      3060
     atgacgttgc tacaatcgct tactcaccgc cgggatgatc gatatgaatc cggcttactc      3120
     tggcgatatg acgactcctg tctaccggat agtcggtcca tggcgctgcg gcgattgcaa      3180
     tgcctgagaa aacggatgga aagagaaccg gatctgcgaa cgactttgca aacaaagatc      3240
     gaggaatacc tagcaaaagg ctacatcaga ctgctcagtg aggaagaaat taatgaaaag      3300
     gtgcctcgtc ggtggtatct acccgttttc cccgtaacca atccaaacaa acctggaaag      3360
     attcgtatag tatgggacgc agcggccagc gcccacggca cttcgttgaa ttcggctctc      3420
     ctcaaaggac cagacctatt gtgctctctt ctcacaattc tactccagtt tcgggaacgt      3480
     cgcatcggac tgaccggtga catccgtgaa atgtttcacc aggtattgat tcgtgcagaa      3540
     gatcagtttt gccagtgttt ctactggctc aaccaaaatg gagaaaccca agtgtacgtc      3600
     atgcaggtga tgacattcgg agcatgctgt tcaccgacca ctgcacagtt cgtgaagaac      3660
     accaatgctg atcgattcgt gaacgaatat ccatcagccc atcaagccat tacaaagtcc      3720
     cactacgtgg acgatatgct tgtgagtctg gacactgaag agcaagccat ccagctggcc      3780
     aaagacgtta ggcacgtcca caagcagggc ggtttcgaga ttcggaactg gatcagcaac      3840
     tcgatagtgg ttctggcggc gctgcaagaa actgacaccg acgaaaaatg cctcgatttg      3900
     tcttccgaac tggccacaga aaaggttcta ggcatgtggt ggaatacgac cgacgacatc      3960
     ttcatctata aagtgggatg gaatcgctac gatccagctc tgttgggagg tgaacgtagg      4020
     ccaacaaagc gggaagttct tcgcgtcctg atgaccatat tcgatcctct aggactaatc      4080
     tctcacttct tgtcatatct gaagatactg ctgcagcaaa tctggcggtc aggagtacag      4140
     tgggatgaag aaatcgacga cgacgcatac gacaaatggc ttacatggct gaaggtgctt      4200
     ccatgcgtcg aacaagtaag gataccaaga tgctacaact ccaagtacct tatgagcgaa      4260
     gccgatgaag tacagctgca cacgatggta gatgcaagcg aaaacggcac ggccgccgtt      4320
     tgctatctcc gctttatccg cgaagcatcc gtttcctgtt ccattgtcgc ggctaaatgc      4380
     cgagttgctc cgcttaagtt cacttcgatc ccacgactag aacttgaagc tgccgtagtt      4440
     ggcgcccggc tatctcgctc cgttcaagag tctctaacct ttaggataca tcgaaagctg      4500
     tactggtctg attccagaga tgttctctgt tggatcaact ctgaccaccg acgctacagc      4560
     caatacgtcg gtcataggat cagcgaaatt cttgaaacat ccgaggcaca agaatggcga      4620
     tgggttccag gaaagaaaaa tccagccgac gacgctacga agtggaacag tctaccagag      4680
     ttgtcatctg aggacaggtg gttcaaaggt gctgactttc tttggcgccc agaggcggac      4740
     tggccgacaa tgcacagccg ccatgattcg accgacaccg aactacgtcc gtcgctttta      4800
     gcacaccacg ctcctccgga accagtgatt tgcgtcaaca acttctcgac ttgggagaga      4860
     ttgcgcaagg ttgtcgcata cgtccaccgt ttcttcaata actgccgtca caaacgccga      4920
     ggaaaaacga cagagacagg tcccttttcg gtcaaacaac ttctcattgc cgatactttc      4980
     ctgattcaac tctgtcaacg ggaagcttat cccgacgaaa tagcagtgct tcaaaataca      5040
     ccccaacgtc ccgaaactac gaagaccata cctaaaacca gtgccctata ccagctcaca      5100
     ccgtggctag acggtaatgg gatcatgcgc atgcgaaccc gtattgctgc atgtcactac      5160
     gcctctgatg acgccaaaaa cccaatcatc cttccgcaca aacatcacat cacccacctg      5220
     atcgttgcac actatcaccg caaatatcac catcaaaacc acgagactgt gattaatgaa      5280
     atcaggcaga aattccgcat ccctcgcata cgtgtgtgct accaacaagt gcgtagggac      5340
     tgccagcagt gcaagaacca gcgagcagct ccaaatccac cattcatggc tgatcttcca      5400
     cccgcccgcc tcgcagcctt ttcacgaccg ttcacgcacg tcggaatcga ctacttcggt      5460
     ccagtcgaag tcaccgtcgg cagaagagta gagaaacgat ggatactgct tgctacatgt      5520
     ctcactatca gagcgattca cttggaggtc gttcactccc tcaacacgag ctcctgcatt      5580
     atggccttcc gaaacttcat ggcccgtcgt ggtacgcccc aaaaagtcta cagcgaccgt      5640
     ggaacaaact ttgtgggtgc aaataaagta ctcaaggagg ttaacgaagt gatgaatgag      5700
     cgcgaattca tgaatgaatt cgggaagtct gcaatcgaat gggtcttcaa tccgcctctc      5760
     acaccgcaca tgggtggtag ttgggagcgg ctgatccgaa ccgtgaaaaa caacctggca      5820
     gtggtgtgtt tgtcagcgag gccatcggac gaagtactcc ggaatttgct gactgagatc      5880
     gagaacaccg tgaactcccg ccccttatct cacgtgccaa tagatgacga ttcggcacca      5940
     gcgctgaccc cgaaccactt tctgctcggc tcgtccaacg gctcgaagcc gctaaccgac      6000
     atcgacgaca gtagtgcagc actcagacag aactggctta cgtcccaaat cctggcaaac      6060
     cagttttgga aacgctgggt aacggactac ctcccagaaa ttacccgaag aagcaagtgg      6120
     tttcaacgtc cgcagcctat cgccgtcgga gatatcgttg tcatcgccga ccctaagctg      6180
     ccacgtaatt gttggccgac gggaaagatc atcgcggcaa aagtaagtag agacggacag      6240
     gttcggtccg caacagtgag gacgtcaagt ggaatctatg atcgcccagc aacgaagttg      6300
     gcagttctgg acgtacggtg cgacggtgag taagccaatc tacagttggc gtacccgggg      6360
     ggac                                                                   6364
//
ID   BEL-124_AA-LTR repbase;    DNA;    INV; 827 BP.
XX
AC   supercont1.251;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-124_AA_;
KW   BEL-124_AA-I; BEL-124_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-827
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.251; Positions 1410906 1410080.
XX
SQ   Sequence 827 BP; 262 A; 167 C; 155 G; 243 T; 0 other;
     tgttattcga caagaataac gcaccttcct ttggtcattt tgacctgcta tccccaatga        60
     tcaacggtga gtgcgatagc agtgcactcg attgagatca attttctgca tgcaaatgag       120
     tgttggcggg tagatcaaaa cagaaaacga aatcagcata gttcaatagt gctacatatt       180
     tacctcctag tttgatagta gcgttttgaa gtgagtacat ttaattgcaa gtacattgaa       240
     ttagtgatag ctttgtttcg agtgtcggta agctggacct gtatataata gagcgattgt       300
     agaactaaaa ccccgtcttc aattaggctc ccatcacctc caccacctac agtgtagcag       360
     catacgtgct aagccattac tccatagtga aaacggtgag aaagtggtag aatctattcc       420
     agagtaaatt ttaaacaaat tacatgctat ccagatccat ctgcttgctc ctgtgaacat       480
     agaagcctac cctacatagt ttgtgcccac tgcgaatatt actgaggata ctaaacgtaa       540
     gttgaactct atctactgta atacatatac acatagaaac atagacgtat catgctgcaa       600
     tcagtgtcag gggttcgcaa gaccacactc acagaccact ttatacagta ttgaattgca       660
     tgaaattaga ttacgagtcg attaagaatc tgtgaattaa ataagtcctc aatgtccttt       720
     ataggaaaat tatattctcc catacatcca aggattacgt gcgtttgaat tcatttccgt       780
     gacggagaat cataattttg gaatttccgt tgaaccaaag ttcaaca                     827
//
ID   BEL-125_AA-I repbase;    DNA;    INV; 5426 BP.
XX
AC   AAGE02023612;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-125_AA_;
KW   BEL-125_AA-LTR; BEL-125_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5426
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023612; Positions  266021  260596.
XX
CC   Positions [4450-5055] - Integrase core
CC   'CACAT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..1096
FT                 /product="BEL-125_AA-I_2p"
FT                 /translation="MEKLIGRRNAQLVQVKWQFAAAEKLHERNASQGEVLD
FT                 RLEQLRELARKFRDTQSEIEENQPDPEAIASVHDFREEFNSHFYRAKDLLE
FT                 QYISNDGDDGDGSSGSVRGSTGSYRSVAGSSRDLRDAVQMPLETQRAMLLN
FT                 QSSGGRNVNNVDPAGGEQVSNHAPFANVRLPAINVPTFDGDRKHWRSFKDI
FT                 FIQTIHARGDLRDSLKMQYLISYLSGDAKRLVNSFPISDANYKEAWAALTN
FT                 FYDKKKYTVFALVREFVEQPAIANATADNLRKLVTTSDEVVRQLNALGEEY
FT                 NTRDPWLIHLLLEKLDKDTRSLWAQKIIDVENPSFEEFLKFLDNRTDALET
FT                 CTASGNPCV"
FT   CDS           3376..5397
FT                 /product="BEL-125_AA-I_1p"
FT                 /translation="MAYGAVVYSRAMDDAGNIFVNLVAAKTRVAPIKQVSL
FT                 PRLELNAAVLLAELMQRVTQALSHITVEHWAWTDNTIVLQWLSSHPRKWKT
FT                 YVANRTSAILDFLPRDRWDHVSSQDNPADCASRGLSPGEFVSFDLWFNGPE
FT                 WLHLDEEFWKTEPQESIVDEDRLEARKLKALHTSPVNIRSSYVVEMELLNR
FT                 RSSYGLVVRALAHVNRFLQAVRSYRLEATLTPSEIDSAKMQLARAAQFDVY
FT                 KQEIEILAKGKELPTKNKLSSLHPFLDDNGTMRVGGRLQSSPYSFNVKHPI
FT                 ILPRDHRLSELLLRELHLQNLHAGPTLLTATVNQQYWIVGLQTAVRRIVRG
FT                 CVRRVRLKGQTANQLMGNLPVPRVMATRAFTHVGVDYAGPFKIHAMCVRGI
FT                 KATKGYLAVFVCMATKAVHLEAASDLSSNVFIAALKRFIGRRGYPNEIWSD
FT                 NGTNFVGTDRWLQEIQQSLKNNGKAVDHFLNNQGIKWVFNPPSAPHRGGIW
FT                 EAAVKSAKKHIVAVLGSEPLTFEEFSTILSQVEACLNSRPLCALSSNPDSY
FT                 EALTPGHFLVGHPLNLIPEPGVRHIPSNRLDRWQTLQKYNEEIWKRWREEY
FT                 VATLQPRTKWRTTEDNVKVNQLVLVKNENVPPAQWELARIVKLHPDASGIV
FT                 RTVTLRRGQTEYQRPVQKVCVLVSD"
XX
SQ   Sequence 5426 BP; 1422 A; 1319 C; 1451 G; 1234 T; 0 other;
     gtttttggtc cttcttcgtc ggattacgtc gcgaaccggt atggaaaagt tgatcggtcg        60
     aagaaacgca cagctagtgc aagtgaaatg gcagtttgct gcagccgaaa aactccacga       120
     gcgaaacgct tcgcaggggg aagttttgga tcggctcgag cagcttagag agctcgccag       180
     gaagttccgt gacacgcaaa gcgagattga ggaaaatcaa cccgacccgg aggcaatcgc       240
     ctcagtgcat gacttccggg aggaattcaa ttcgcacttc tatcgtgcaa aggatttact       300
     cgagcagtac atttccaatg acggcgacga tggagatggc agcagcggct ctgtcagagg       360
     ttccaccggg agctacagat cggtggccgg ttccagccgt gatcttcggg atgccgtgca       420
     gatgccactg gagacccaac gagcgatgtt gctgaatcag tcgtcgggcg gaagaaacgt       480
     aaacaatgtt gatcctgcag gaggagaaca ggtgtcgaac catgcacctt ttgcgaatgt       540
     gcgtctgcct gcaatcaacg tgccaacatt cgatggcgat cgaaagcatt ggagatcctt       600
     caaggatatt ttcatccaaa cgatccacgc aagaggcgat ttgcgggatt cgttaaaaat       660
     gcaatacctg atttcgtatc tgagcggcga tgcgaagcgt ctggtgaatt cattcccaat       720
     atcggatgcc aactacaagg aggcgtgggc agccttaaca aacttctatg ataagaagaa       780
     atacacggtc ttcgctctcg ttcgggaatt tgtcgagcaa ccggcgattg ctaatgctac       840
     tgcggacaat ctgcgcaagt tggtcactac ctcggacgaa gtagttcgcc aactgaacgc       900
     actgggagag gagtataata cgcgagatcc gtggttgatc cacctgttac tggagaagct       960
     tgataaggac acacggtcct tgtgggcaca aaagatcatc gatgtcgaga atccttcctt      1020
     cgaggagttt ttaaagtttc tggataatcg caccgacgct cttgaaacct gcacggcgtc      1080
     tggaaatccg tgcgtctgag gtgtcgacag atgggcagcg caaggatact gggaagaaga      1140
     tgcatgctga gaagaagatg caatcgttgc acacggctgc ggtgatacaa aagtgcgcga      1200
     aatgctctag tgagcatccg attcatttgt gtgaagactt taagaagatg gacttacagt      1260
     gcaaacgcga acttgtacaa aaggcgaaat tgtgctacaa ctgtctgcgg tcgtcgcatt      1320
     cagtgaaaaa ctgtgcttcg aagtcggtgt gtcgcactgt gggttgcaaa cagcgccatc      1380
     atacgctgtt gtgcgcaaag gcggaaaatt cgagtgacca gcgagacgaa caaggagagc      1440
     cgaaagagca agtgcaacct ttgcaaggtt ctggagaagt agtcaactct ctggtagttc      1500
     aagttccaaa cccactgaag gaaacgttcg tactaccgac tgcgctcatc aacgtgaaag      1560
     cggtgaacgg aggattcctg aagtttcgtg cattgattga ttccggctcc ggtgcttcac      1620
     tgatcaccga agcctgtgtg aacaaactcg gtattccacg tacaagcggc aaggtagcgg      1680
     ttttccggac tggcgcagca gtctgccgtg acaactcgag gactcgtgaa gcttgtgatt      1740
     gcaaatcggt gcagcgataa cgtgattctg cggaccaacg cgttcgttat gggcaagctt      1800
     acttcaacac ttcctgcgca gtgcattgtg cccaattcca agctgcttga gaagtagatt      1860
     caagagtcgt tagcggatcc ggcatacaac cagccaggtc caatcgacat aattttgggt      1920
     tcggatgtct ttcttgccat actgcaacca gggcaagtca aggacgaatt cggtatccca      1980
     atcgcccaga acacgatctt cggctggatc gtatctggca atcaatcgat ctacacagca      2040
     ggggttccca acaatttctc catcatcaac ctacacgcag aggtggatgt caatcgtaca      2100
     ttgcgccaat tctgggaaca agaggaagtg ccgaaatctc agcagcttac accagcggac      2160
     caggctgcgg ttgagtgttt tcggtccacg accacacgtg acgattcggg acgcttcatg      2220
     ttcgattgcc tttcgacgat tcgaagtcag cgctaggcga atcaatcgca ccaactatca      2280
     aacggttgag gtccatggag aaacgcttcg aacgtgattc aagctttcgt cgacaatact      2340
     cggacttcat cgcagaatac ctgacactgg gtcacatgga ggaggtacct gcggatgaga      2400
     taagcgtgga agttgacaaa tgcttctacc tagcccacca tgcagtgatt aaagcagaca      2460
     gttcaacaac taaactgagg gtagtttttg atgcctcgag tgcatcggga tcaggtgtct      2520
     ctctcaacga ccggctctta tccggaccaa acgtgaatca agatttattc gatgttcatt      2580
     tgcgtttccg gtcgaacgag gttgtattcg ctgcagatgc agaaaagatg ttccgccaag      2640
     tgttggttca tccactagac cgagactacc aacgaattgt atggcgtaac gaccccagcg      2700
     aacccatcaa gcattttcgt ctctgtaccg tcacatacag tacgaagcca gcgccgtttc      2760
     tggcaattga agccatgcgc gaggcagcca gaagctatga aacagtgtat ccagtagctg      2820
     ccgcgaggat agtgctcgac atgtacgtcg atgacttcat gtctggcgcg aagaacatcg      2880
     atgaggcaaa gaagttgaaa gaccaggtgt gcgagatcct aaagtccgcg ggattcaact      2940
     tacgcaagtg gacgactaat cgaccatagc tgctgggtga cagtgagtac tcggagcaaa      3000
     taccaatgga gatgaagcta gaggagcagc cggatgctgt caaggctttt ggcatacatt      3060
     gactacccaa ggacgacgtt ttttccttca aggtcagcct atcggcggac agtgttaaca      3120
     ctaaacgaca actgctctcg gattcatcac ggctcttcga tccgtacggg tggctgtctc      3180
     cggttatcgt gaagataaaa attctctttc aacaactgtg aaatttgctg ggataatccg      3240
     ttgcctgcaa cagtggaggt accatggaag gacatcaagg aaagtctccg atttttggaa      3300
     cagattcgta taccacgcta catcgtaaac ttcaacggga aggtgcagtt gcacggattt      3360
     tcagacgcat ccgaaatggc ctacggtgcg gtggtataca gtcgagcaat ggacgacgcg      3420
     ggaaacattt tcgtaaatct cgttgctgct aagactagag tcgctccaat caagcaggtt      3480
     tcgcttccac gcttggagct gaatgctgca gttctactgg cagaactcat gcaacgagtt      3540
     actcaagcac tctctcacat cactgtggaa cactgggcat ggacggacaa cactatcgta      3600
     ctgcagtggc tgtcttcgca tccgcgcaag tggaagacgt acgtagctaa ccgtacttct      3660
     gccattcttg attttctacc tcgtgaccgc tgggaccacg tgagcagcca agacaacccg      3720
     gctgattgtg cgtctcgagg tctttcgcca ggtgagtttg tatcgttcga tctctggttc      3780
     aacggaccgg agtggcttca tttggatgaa gaattttgga agactgagcc ccaagagtca      3840
     atcgtcgatg aagatcgtct cgaagcacgc aaactaaagg ctttacacac cagtccggtt      3900
     aacatcagaa gcagttacgt cgtcgagatg gaattgctta atcgacgttc aagttacggt      3960
     ttggtagtgc gcgcactagc gcacgtgaat cgttttctac aagctgtaag aagctatcgc      4020
     ctggaagcaa cgctaacgcc aagtgaaatt gactcagcga aaatgcagtt ggcaagagct      4080
     gcacaattcg acgtgtacaa gcaagagatc gagatactcg ccaagggaaa ggagttgccg      4140
     accaagaata aattgtcatc actacacccc ttcttggacg acaacgggac aatgcgcgtg      4200
     ggtggtcgtc tacagagctc accctactcg ttcaacgtga agcatcccat aatacttcca      4260
     cgtgaccatc ggttgtcgga actacttcta cgagaacttc accttcagaa cctacatgca      4320
     ggtccaacgc tattgacagc aacagtgaac cagcaatatt ggattgttgg actgcagacc      4380
     gcagttcgac gaatagttcg tggatgcgtt cgacgcgtga ggctgaaggg gcaaaccgcc      4440
     aatcagctca tgggcaacct accagtacct cgtgttatgg caacgcgcgc attcactcac      4500
     gtcggcgtgg attacgctgg cccattcaag atacacgcaa tgtgcgtcag gggaatcaag      4560
     gctaccaagg gatatttggc cgtgtttgtg tgcatggcca ccaaggcggt gcatttagag      4620
     gccgccagtg acctctcaag taacgtgttc atcgccgcac tcaagcgatt catcggaagg      4680
     cgcggctacc ccaacgaaat ctggtccgac aacggtacca attttgttgg tacggatcgt      4740
     tggcttcaag agatccagca atcactgaag aacaacggca aggcggtcga ccactttctc      4800
     aacaatcaag gcatcaagtg ggtttttaac cctccatcgg cgccgcaccg tggcgggatt      4860
     tgggaagcgg ccgtaaagag cgccaagaag cacatcgtcg ctgttcttgg ctccgaaccg      4920
     cttacatttg aggaattttc gacgattttg tcccaagtgg aggcctgcct gaactccagg      4980
     cccctctgcg cgctctctag caatccggac agttacgagg ccttaacgcc gggacatttt      5040
     ctggtgggac atccactgaa ccttatcccg gaaccaggtg ttcggcatat cccatccaac      5100
     cggctagata gatggcaaac gctgcaaaag tacaacgaag agatatggaa gcgatggcgt      5160
     gaagagtatg tggctacact acagccgcgt acgaagtggc gaactacgga agataatgtg      5220
     aaggtgaacc aactagtgtt ggtgaaaaac gagaacgttc cgccggctca atgggagttg      5280
     gcacgcatcg tcaagctaca tccggatgct tcgggtattg tcaggactgt gaccttgcga      5340
     cggggtcaga cggaatatca gcgtcctgtg cagaaggtct gcgttttggt atcggattga      5400
     ggcacgtggc ctcaaggtgg ggagga                                           5426
//
ID   BEL-125_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   AAGE02023612;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-125_AA_;
KW   BEL-125_AA-I; BEL-125_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023612; Positions  260595  260367.
XX
SQ   Sequence 229 BP; 64 A; 59 C; 38 G; 68 T; 0 other;
     tgttccggtg cgacttccca atgctacaca tcacacacga cagcgcaaat accttgcgca        60
     aacgtcacca ccggacggtt attttttgtt tattctctct ccctacaaat cacaacctaa       120
     caacaagaga agaaaaaaag ttattaataa aagtttgatt ttttcggagt aaacacgcgg       180
     ttttttcctc ttctccgggt tccgtcggga tttatcgtct atccgtaca                   229
//
ID   BEL-126_AA-I repbase;    DNA;    INV; 5335 BP.
XX
AC   AAGE02017920;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-126_AA_;
KW   BEL-126_AA-LTR; BEL-126_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5335
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017920; Positions    7688   13022.
XX
CC   'CTGAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           939..5335
FT                 /product="BEL-126_AA-I_1p"
FT                 /translation="MQTSSNTIRNRWTKSDGFINVHSDGDYNKPEVNEPTV
FT                 HGYSSTESPECFVCRSNCQSVAKCKRFIELTLDAKRDVVRETKLCRKCLRK
FT                 HNGSCRQQKPCGIRGCTFLHHPLLHNEKPHTVNEHVGTSTDGIHSCNIHMT
FT                 QTNEILFRIVPVLIHGPSKVIRTYAFIDDGSELTLMEQSLADELGARGPKS
FT                 SLCLKWTGGTNRVEDESQRVDVQISGLGIESKQHQMINVQTIQELQLRPQT
FT                 MVLSELQERFAYLKGLPVESYTNACPRILIGLDNAFLGHVLKSREGKPHEP
FT                 IATKTQLGWIIYGSCYQRKRSSNYVNVHTIKLCECNSGTDENLHQAMKQYF
FT                 ALDSLGILNPDRIIRSSEEQRAVELLEKHTTPKAGRYESGLLWKYDNVRLP
FT                 NSKDMAYKRWLCLDRRMNRDIQFAEIVQHKMADYVSNGYVRKLTPAELEVS
FT                 QNREWYLPVFPVINPNKPGKIRLVWDAAASVYGTSLNSLLLKGPDLLTSLL
FT                 TVLVQFREFRIGICGDIREMYLQILLKQEVRLRFFWKDNKHDLHPQVFEML
FT                 VLPFGVSCAPSIAQHVKNVNAKRFEHEHPTAVRAIVDQHYVDDMLASVETE
FT                 EEAVSLVNDVKRIHAAAGFEMRNWISNCSTIMEALDEPRTEVKNLNLAEAG
FT                 VTEKVLGLWWNTTTDCFTFKVSSRYDPELISGMRKPTKREVLRTLMMIFDP
FT                 LGLIGHLLMFLKVVLQEIWRTSVSWDDPIEEAQFERWLQWLKVLPEVETVE
FT                 VPRCYRSTVSLESSTEVQMHIFVDASENGFAAVVYLRFQQGDIIETALVGS
FT                 KTRVAPLKFLSIPRSELQACVIGARFANTLQKSLTVKVNRKFFWTDSSDVI
FT                 SWLNCDHRRYSQFVAFRVSEILDTTEVHEWRWIRTQSNVADEGTKWKRIPD
FT                 MKKTGRWFTGPAFLKKPICEWPIEVAAPKATSEELRPHLLVHVVIPDPIID
FT                 PRNFSQWNPLVRQVAYVFRFICNIRTSHPEQRATGLLTKSELARAERFLYR
FT                 FAQCSSYADEIAVLSTKRVTNECTMSIPKSSSIYQLCPFLDEHDVMRMRGR
FT                 TAACPYIDKEAINPIILPRDNQVTKLIVDHYHRMYHHQNHTTVLNELRQRY
FT                 VISRLKATLNKIRRDCQQCKNDRVRPLAPIMSDLPLARLAAFSRPFTHMGV
FT                 DYFGPLLVSTGRRSEKRWVLLATCLTTRAIHLQIVHSMTTNSCIMAIRNVM
FT                 ARRGTPAVIYSDRGTNFQGACSELETAMANLDNDKLAKEFTTSRTSWKFIP
FT                 PASPHMGGAWERLVRTVKQNLDRIKPSESMSYEVLENMLTEVENIINSRPL
FT                 TSIPIDSDLSPVLTPNHFLLGSSNGMRSCVPLDDRPTTLRSSSQYSQVLAN
FT                 RFWKLWLQDYLPSITRRTKWFSESQPIKVNDIVIIVDPKYARNCWPKGRVI
FT                 GVKKSTDGQVRSATVQTSSGIYERPTVKLAVLDVGVETNAHLEDQERIPGG
FT                 A"
XX
SQ   Sequence 5335 BP; 1616 A; 1168 C; 1234 G; 1317 T; 0 other;
     tcttacaaaa ttcttgtaac ggtcaactaa gcattaaacc acaactaccg tcatgagtac        60
     caccagcaaa caatcaggaa agggaacgga aaatgagact actgatgcag ctgtagttac       120
     cggaatcaac cgccttacta tcgtggatat agcgaaaagc ggagcgatgg atgcagagaa       180
     tcaggtaact ggcgcaaaat gcgcagcagc tgaagtgctt acaaaaacga acctaaattc       240
     cgagatcaat gaagctagcg ataacactaa agcggtacta gttacgggaa ccaaaccgaa       300
     gcatgtgctt ccaagtgctt tggcaacgac cgatcaagag cagctactgg caggtccagc       360
     cagtgcgagg aatatgtctg tcttcttaac cgcagccagt tggcggcacg gcaggtcgtg       420
     cctaaagact tgccagagtt taatggaaat tctgaagact ggccgttgtt ttattcgact       480
     tataattcgt caacgcatat gtgtggttat tccagtgaag agaacatgct tcgtttgcga       540
     aaatgcctga aaggcaaagc attagaagcc gtaagatgtc gacttctcca tccatctaac       600
     gtcggcggag taatgtcgac gctgaaaatg ctgtatggta gacccgaagc tattgtgaac       660
     gcatcgataa agaaaattag agcattacca tcaccgcaag tggaaaaact ggactccttg       720
     atcaatttcg ctttaactat tgagaatctg gtggcaacta tcgaagcatg tggagtccaa       780
     gattttgtat ataatgcttc tttaaagttc gaacttatcg atcggctccc cccagcattg       840
     aaattagatt gggcgaagca ctccaggaat aatccagccc caaaccttac agatttagtg       900
     cctggttata tgctatcgca gaagatgcta gtaccgtaat gcaaacgtcc agtaacacga       960
     tcaggaatcg ctggacaaag agtgatggat ttataaacgt tcattccgat ggtgactaca      1020
     acaaaccaga agtgaatgaa ccaactgtgc acggatattc ctcgactgaa tcgccggaat      1080
     gtttcgtttg tagaagcaac tgccaatcag tagccaaatg caaacggttc atagagctta      1140
     cattggatgc taagagggac gtagtaagag aaacaaagct atgccgaaaa tgcttacgca      1200
     agcataacgg atcatgtcgt cagcaaaaac catgtggtat taggggctgt acttttctcc      1260
     atcatccgtt attacacaac gagaagccgc ataccgttaa cgaacacgtc ggaacatcca      1320
     cagatggtat tcatagctgc aacattcaca tgacccaaac caatgagata ctattccgaa      1380
     ttgtgccggt tttgatccat ggtccttcga aggtaatacg aacctacgcg ttcattgatg      1440
     acggttcaga attgactcta atggaacaaa gtttagcgga tgaattagga gcacggggtc      1500
     caaaatcgtc gctatgtctt aaatggacag gaggaaccaa cagggtggaa gacgagtctc      1560
     aaagggttga cgtgcaaata tctggactag gaattgagtc caaacaacac caaatgataa      1620
     atgtgcaaac tattcaggag ttacaactgc gtccacaaac tatggtactt tctgagctac      1680
     aagaaagatt cgcttacctt aaaggattgc ctgtagaatc atacactaat gcctgtcccc      1740
     gaatactaat tgggttagac aacgcattcc tcgggcatgt gctgaaaagt cgcgaaggaa      1800
     agccacacga gccaatcgcc actaaaacgc aacttggatg gataatctac ggcagttgtt      1860
     atcaacggaa acggagttcg aattacgtaa atgttcatac tataaagtta tgtgagtgca      1920
     attcaggaac cgatgaaaac ctgcatcaag caatgaaaca atattttgcc ctcgatagtc      1980
     taggtatctt aaacccagac aggattattc gatcgtcaga agaacagcgg gccgtagaac      2040
     ttttggaaaa gcatacaact ccaaaggcag ggcgatatga atcggggcta ctttggaagt      2100
     atgacaatgt acgtctccca aacagtaaag acatggcata caagcgatgg ctatgtctcg      2160
     atagacgtat gaatcgggac atacagtttg cggaaatcgt ccagcacaaa atggcggatt      2220
     atgtgtctaa cggatacgtg cgaaaattga caccggcgga actcgaagta agtcagaatc      2280
     gagagtggta cttacccgtc tttccagtca ttaatccaaa caagccgggc aagataaggc      2340
     tggtatggga tgcggcagcc agcgtatatg gaacatctct caattccctt ttattgaagg      2400
     gtccagatct tctaacgtcg ctcctgacgg tactcgtcca gttccgtgaa ttccgcattg      2460
     ggatatgcgg agacattcga gaaatgtatt tgcagatatt gcttaaacaa gaggtacgat      2520
     tacgtttttt ctggaaagac aataagcacg atctacatcc acaagtgttc gaaatgttgg      2580
     tcttgccatt tggagtctcc tgtgctccga gtatagcaca acatgtgaag aatgtaaacg      2640
     ccaagcgatt cgaacatgaa caccctactg cagttcgggc tatcgttgat caacactacg      2700
     ttgatgatat gctcgcaagt gtcgaaacag aggaagaagc cgtgagttta gtaaacgatg      2760
     tgaaacgaat tcatgcagca gccggtttcg aaatgcggaa ttggatttcg aactgttcaa      2820
     ctattatgga agcgttagac gaaccaagaa cagaagtgaa gaacctcaac ttggctgaag      2880
     caggcgtcac cgaaaaagtc cttgggttat ggtggaatac aaccaccgac tgtttcacct      2940
     tcaaagtatc ttcgcgatac gatcctgaat tgatatcagg gatgcggaag ccaaccaaac      3000
     gagaggtttt gcgaacccta atgatgattt ttgacccttt aggtctcata ggacaccttc      3060
     tgatgttcct gaaggtagtt ctacaagaaa tatggagaac atctgtctcc tgggatgatc      3120
     ctattgagga agctcaattt gagaggtggc tgcagtggtt gaaggttctg ccagaggtag      3180
     aaacagtgga agttccacga tgctatagat caacggtatc gttggaaagt tctaccgagg      3240
     tacaaatgca tatattcgtt gatgcgagtg aaaatgggtt tgcagccgtc gtatacctta      3300
     ggtttcaaca gggtgatata atcgaaactg cattggttgg atctaaaaca agagttgctc      3360
     cactgaaatt cttatcgata ccacgttctg aacttcaagc ttgcgtcatc ggagcccgat      3420
     tcgccaatac tttacagaaa tctcttactg taaaggtcaa tagaaaattt ttctggacag      3480
     actccagtga tgtcattagt tggctcaatt gtgaccatcg ccgatacagc cagtttgtgg      3540
     cgttccgagt cagcgagatt ctcgatacca ccgaagttca cgaatggaga tggatacgga      3600
     cgcaatcaaa tgtagcagat gaagggacaa agtggaaacg aattcctgac atgaaaaaaa      3660
     cgggcaggtg gttcacaggc cctgcatttt tgaagaaacc aatttgtgaa tggccaatag      3720
     aagtcgcagc tcctaaagca accagtgaag aacttcgccc acacttgctc gtccatgtag      3780
     taattccgga ccctattatc gacccacgaa acttttctca gtggaaccca ttagtacgcc      3840
     aagttgctta cgtgtttcgc tttatttgca acatcagaac ttctcaccct gagcagcgag      3900
     ctaccgggtt gctaacgaaa tccgagttag ctcgtgcgga aagatttttg taccgttttg      3960
     cacaatgcag ttcatatgcg gatgaaatcg cagtgctttc aaccaagcgc gttacgaatg      4020
     aatgtacaat gtcaattccg aaaagcagtt ctatttatca gctttgtccc ttccttgatg      4080
     aacatgatgt catgcggatg aggggcagaa cggctgcttg tccgtatatt gataaggaag      4140
     ctattaaccc aatcattctc ccaagagata atcaagtcac caaactgata gtggatcatt      4200
     atcatcgcat gtatcaccac cagaaccata ccactgttct caacgaattg cggcagcgat      4260
     acgtcatatc acgcttgaaa gcaactctga acaagattcg ccgagattgc caacagtgta      4320
     aaaatgatcg tgtacgtcca cttgcaccca taatgagtga cttaccttta gcccgccttg      4380
     ctgccttttc ccgaccattt acgcatatgg gagtagacta ctttgggcct ttattagtga      4440
     gtacagggcg cagatctgaa aaacgctggg ttcttctagc cacctgtctg actacgcgtg      4500
     ccattcattt acaaattgta cactccatga ctactaattc atgtataatg gccatcagaa      4560
     acgttatggc cagaagaggt acgcctgctg ttatatacag tgacagaggt acaaactttc      4620
     aaggagcttg cagcgaactg gaaacggcaa tggcgaactt ggataatgat aaattggcaa      4680
     aggagttcac cacatcgcga acatcctgga agtttatccc tcccgcgtca cctcatatgg      4740
     gtggagcgtg ggagcgcctg gtgagaacag ttaaacaaaa cctcgacagg attaaaccta      4800
     gcgaaagcat gtcttacgaa gtcctcgaga acatgctaac tgaagtagag aatattatca      4860
     attctcggcc tttaacttca attcctattg acagtgatct gtccccggtg ttaacaccca      4920
     accattttct gttgggatca agcaatggaa tgagatcatg cgtcccatta gacgatcgac      4980
     caacaacact gagatctagt tcgcagtact ctcaagtatt ggcgaaccgt ttctggaagc      5040
     tttggctaca ggactacctt ccatctatta ctcgccgcac aaaatggttt tccgagtctc      5100
     aaccgataaa agtcaacgat attgttataa tagtggatcc aaagtacgcc aggaactgct      5160
     ggcctaaggg ccgggtaatt ggtgtcaaga agagtacaga tggacaagtt cggagtgcta      5220
     cagtgcagac atccagcggt atatacgaac ggccaacagt taagctcgcc gtgcttgacg      5280
     taggcgttga aacgaatgct catctggaag accaggagcg cattccggga ggcgc           5335
//
ID   BEL-126_AA-LTR repbase;    DNA;    INV; 839 BP.
XX
AC   AAGE02017920;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-126_AA_;
KW   BEL-126_AA-I; BEL-126_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-839
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017920; Positions    6849    7687.
XX
SQ   Sequence 839 BP; 321 A; 133 C; 133 G; 252 T; 0 other;
     tgttagtccc gctacgtcta tagttcgtcg agctccacat tccccaacat cgaccacgcc        60
     tgatgagctc tagaaggatt gtttcgtctg cgagaaacgt catgcatggt agatgagaac       120
     aagagaaatc taaagcgaga acaaattgaa gtgactgtga tgacatgcaa atcgtcctta       180
     aagctattgt agcgtaaaat ttctaaattg agaacaagtg aattatttac aactatcttg       240
     attaccttaa atgatattaa agactaagtg aaattattaa gctacttata agtacatgca       300
     agtaacttaa acaactaaag gctaaagcaa tatccctatc aatgttaatt ttctttacag       360
     tatcgataat gaattattag tatagtaaca tgcataaaat tgaattcgca tccattaatc       420
     aaaaacaatt ataaataagg gtgagatgaa caaattaatg aattaatgac aagtactgaa       480
     aatgattcaa tttgatactt ctaccttaac agaaaacaaa aactacatat gctgaactat       540
     tgaattggat atctaaattt aacataataa gccagataaa aggtgagcag ataaattatt       600
     tcgtgcatat tagatatatg aagtcaactc ttgttacagg acgaattata tgtctataga       660
     cagaaaatgt catatttgga cggttgagcg gtaacgaatt actacaagta agagtaacat       720
     tatttaaagg atcatcacac actaaaatta tactgtttca taggaatttt gtaatttatc       780
     atccgtatta cccatcaata aattgacaga attgacgatt cgtttattac cgcccaaca        839
//
ID   BEL-127_AA-I repbase;    DNA;    INV; 5849 BP.
XX
AC   supercont1.130;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-127_AA_;
KW   BEL-127_AA-LTR; BEL-127_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5849
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.130; Positions  368850  374698.
XX
CC   'CAGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           793..3216
FT                 /product="BEL-127_AA-I_1p"
FT                 /translation="MKTRRIDDCDDPIDAGKKNQSSKQSPVCSRLGMERNS
FT                 VSSIRSHVDSVSQDGLGRRQVGPTKAQLAARKGLTFKLPKFSGKPAQWPLF
FT                 YAAYNASNDACGYMNHENMMRLQEALEGDALELVSGQLLLPESVPRVIEKL
FT                 RRHYGRPEQLLESLLEKVKRLDPPKPDSLRSFVPFGNTVEQLCGHLEAADL
FT                 RQHLVNPLLIKSLVAKLPDREKREWVHYQRGRGEATLRTLTDFLMNIVADA
FT                 CEANVDVEFKPSHQPRGGSHSEKLRVKEKGRLYAHAEVSSPAVNASEEKLL
FT                 RPCQKCRRTDHRLRHCAEFKKLRYTERLKLATREKLCHVCLNEHDGKCRFK
FT                 IRCNIGECREFHNPLMHPVGNVVGINAHIRTNCTVMFRIVPVQLHCGGKST
FT                 TVLAFLDEGANVTLMEKALADRLDAVGGDQVRLTVKWTGNISRTEESRRMN
FT                 LWATGTTAGANNKMMLYNVHTIGKLMLPRQKLDYEELAAQHSHMRGLPIES
FT                 YDGRPQLLIGANNIYSFAPMEAKVGTPMEPIAVRTNLGWTVYGPRQSTTVA
FT                 TGGFFGYHQQVTNEDLHELLKSHYALEESVVVIPQETAEEKRAREILERTT
FT                 KRVGDRFETGLLWKTEDPRFPDSYLMALRRMKQLEKRLEKNPVLHQNVCKQ
FT                 INEYQQKGYAHLATAEELANTPSDQAWYLPINVVLNPKKPEKVRLIWDAAA
FT                 TVLGVSLNSQLLKGPDMLVPLVKVLSGFREWRIAFGGDLKEMFHQLKIREE
FT                 DKQKQRFIFRKNPADPPSTGTQKSSPHNIPKRLRPSRTDITSMTTLIALTQ
FT                 WKRRLP"
FT   CDS           2982..5333
FT                 /product="BEL-127_AA-I_2p"
FT                 /translation="MEDCIRWRPEGNVSPAEDSRRRQAEATFHLSEKPGGS
FT                 TKHRNAEEFATQYPEASAAITHRHYVDDYFDSVDTVEEAVTLAQDVRSVHQ
FT                 KAGFEIRNWVSNSPEVLLKLGEEKPATSVHFGRDKQTSKEIVLGVIWDPEM
FT                 DQFSFSTKHREDLIPYLYEGQRPTKRLVASCVMGFFDPLGLLSPFTIHGKI
FT                 IIQHLWRSNCDWDQEINSNSWELWKRWTSLLPEVEAIRIPRCYLGCAKSAE
FT                 VDALEVHIFTDASEHGFGCVAYLRAVIRGEVHCSLMMSRAKVAPIKRQSIP
FT                 RLELMGAVLGARMNQTVLSTHSYQINRTVFWTDSRTVCSWLNSDQHRYKQF
FT                 VAFRVGEIQELTKVADWRWIPTKLNIADVLTKWGQGPPLQSEGEWFNGPSF
FT                 LYQPPEMWPTQESTVEETEEEARGVVLFHEVIDVQPISRWTKLLRVTANVI
FT                 RFIANCRRKREGEPIVVTRATAKQRQLMGSTAVKYASVTAPVGQEELQQAE
FT                 TILWRQAQWDSFPDEMSALTGNLKRAPDTPMETVKKSSQIYKSSPVLDDEG
FT                 VLRMEGRLANSEESSFDKKHPIILSRFHEVTQRLIQHYHETFGHANSETVF
FT                 NEMRQRFQIPKLRPAIQQVVRKCVWCKVNKCRPRSPRMAPLPVERITPHLR
FT                 PFSSVGVDYLGPVEVTVGRRREKRWVAVFTCLAVRAVHLEVVHSLTTESCR
FT                 MAITRFQSKFGKPEQIFSDNATCFRGASNEMVRMEKINQECAEVVSSSSTV
FT                 WNFIPPGTPHMECGNAWCGRWKRRCVRLTTEGN"
XX
SQ   Sequence 5849 BP; 1582 A; 1434 C; 1741 G; 1092 T; 0 other;
     atctcaaaaa gaagtgacgc aaaccaagtg tccctgtgag aagccggacc tgccccaaga        60
     tgccttccga tgctgaatcc gtgaaggatc aaaccctcct ggatctcacg ggaactccgt       120
     gtgggatatg cggtccgtcg acatgcgacg aagcgatgat cggttgcgat ggatgccccg       180
     gttggttcca cgttcgctgc gtgggcctta cggaaggtaa gctgcctaaa aagtggtact       240
     gcaaaagcga agcctgtcaa gagaaggctc aggagtacca gaagcagaag gacagcaaaa       300
     agccgacgcg caaccggaag caaaccaacg agtcggaaag ttccaacgtg tccaacgtcg       360
     gaacgaaggt gcgcgcactc gaggatcggc aaaagcagca gttggcagag ctggaggcgg       420
     ccatgcagct gaaaaggaag gaaaaggagt tccagcgcgc gctcgagagg aagaaaatgg       480
     aaatggaaga ggagatgcgt gctgaggagg aggaggagca aaaggcttgg caagcggaaa       540
     tgctccagcg taaaagggag catattcaga ggatggaagc caatcgaaaa tcattcgaga       600
     tgcagatggc ggatatggac aagaagttgg aagagctttc ggtcccccat gtgccacaat       660
     cggggtcaaa gctcgtcggc agcggtacgc aagcaggaga accttccgga aaaatcaaca       720
     aaaacgtgtt gaagctgacg aaggccaacc taaaaagact ggcggaggat accgacgagg       780
     acaccgacga agatgaagac aaggaggata gatgactgcg acgatcctat cgacgcgggt       840
     aagaagaatc agtcgagtaa gcagagtccg gtttgctcga ggctgggaat ggagaggaat       900
     tcagtttcat cgattaggag tcacgtcgac agtgtgagcc aagacgggct ggggcgtcgg       960
     caagtagggc cgacaaaggc gcagctggct gcgagaaagg gcctgacatt caagctcccc      1020
     aagttctcgg gcaagccagc acagtggccc ctgttttatg cggcctacaa cgcgtctaac      1080
     gatgcgtgtg gttatatgaa ccacgagaac atgatgcgac tgcaggaggc gctggaagga      1140
     gatgccctgg agttggtatc aggccagctt ctcctcccgg agtcggtccc gcgggtgatc      1200
     gaaaagctac gacggcatta cggacggccg gagcagttgc tggagagtct attggagaag      1260
     gttaaacgtt tggatccccc aaagccggac agtctaagga gttttgttcc atttggaaat      1320
     acggtggagc aactctgtgg tcatttggag gccgctgacc tgagacaaca tctcgtcaac      1380
     ccactactca tcaaatcgct ggtcgctaaa ctcccagacc gtgagaagcg agagtgggtc      1440
     cattaccaga gaggtcgcgg tgaagcaacg ttgaggacac tgacggattt ccttatgaac      1500
     attgtggcag atgcctgcga agccaacgtt gacgtggagt tcaagccatc gcatcagcca      1560
     agaggaggtt cccattccga gaagctaaga gtgaaggaga aaggtaggct ttatgcccac      1620
     gccgaagtca gcagtccggc cgtcaacgcg agtgaggaga agttgctgag gccctgccaa      1680
     aaatgccgac gaacagatca tcgcctgcgg cattgcgcgg aattcaagaa gctgcggtat      1740
     acggaaaggt tgaaattggc aactcgcgaa aaattgtgtc acgtctgcct caacgagcac      1800
     gacgggaaat gccggttcaa gatccggtgt aacatcggcg aatgcaggga gttccacaat      1860
     cctctaatgc acccagttgg aaacgtcgtt ggaataaatg cgcacattcg gacaaactgc      1920
     acggtcatgt tccggatcgt tccagtccag ctgcactgcg gagggaaatc aaccactgtg      1980
     ctggcgttcc tggacgaagg cgccaacgtc acgttgatgg agaaagcgct cgctgatcgc      2040
     cttgacgcag taggaggaga tcaagtgcgg cttacagtca agtggaccgg aaatatttcc      2100
     agaacggagg aatcccggag aatgaacctg tgggcgacag gcacgacggc cggtgccaac      2160
     aacaagatga tgctgtacaa tgtccacacg atcggaaaac tgatgctgcc gcgccagaaa      2220
     ctggactatg aggagcttgc agcacagcac agtcatatga gaggattgcc aatcgagtcc      2280
     tacgatggaa ggcctcaatt gctcattggg gcgaataaca tttattcctt cgctccgatg      2340
     gaggcaaagg tgggcacgcc gatggagcca atcgccgttc gaaccaacct tgggtggacg      2400
     gtttatggac cacgacaatc aaccactgtg gcgaccggtg gctttttcgg ttaccaccaa      2460
     caagttacca acgaggacct gcacgagctg ctcaaaagcc actacgcgct ggaagagtcg      2520
     gtggtagtaa ttccacaaga aacggcggag gagaaacggg cccgtgaaat attggagcgc      2580
     accaccaaac gtgtcggcga ccgcttcgaa accgggttgc tgtggaagac agaagaccca      2640
     cggtttccgg acagctatct catggccctg cgaaggatga agcagctgga gaagcggcta      2700
     gaaaagaatc cggtgctgca ccaaaatgtc tgtaagcaga tcaacgagta tcagcagaaa      2760
     gggtacgctc atcttgccac cgctgaggaa ctggccaata caccatccga ccaggcctgg      2820
     taccttccga tcaacgtcgt cctaaatccg aagaagcccg aaaaggttcg tctcatctgg      2880
     gatgcggctg cgacggtcct aggggtctcc ttaaactccc agctgctaaa aggaccggac      2940
     atgctcgttc cactggtcaa agttctctcc ggctttcgcg aatggaggat tgcattcggt      3000
     ggagacctga aggaaatgtt tcaccagctg aagattcgcg aagaagacaa gcagaagcaa      3060
     cgtttcatct ttcggaaaaa cccggcggat ccaccaagca ccggaacgca gaagagttcg      3120
     ccacacaata tcccgaagcg tctgcggcca tcacgcaccg acattacgtc gatgactact      3180
     ttgatagcgt tgacacagtg gaagaggcgg ttaccctagc ccaggacgtg cgatcagttc      3240
     accagaaggc tggcttcgag atccggaact gggtatccaa ttcaccggaa gttctcctaa      3300
     aactgggaga ggaaaaacca gctacgtcgg ttcatttcgg ccgggataag cagacatcga      3360
     aggagatagt tctcggagtg atatgggacc cggagatgga ccagttctca ttctcaacga      3420
     aacaccggga agatttgata ccgtacctgt atgaaggaca acggccgacg aaaagactcg      3480
     tcgcaagctg cgtgatggga ttcttcgacc cgctcggact gttgtcaccg ttcaccatcc      3540
     acgggaaaat catcatccaa catctgtggc gatccaactg cgactgggat caagaaatca      3600
     attccaattc ctgggagctg tggaagcggt ggacaagctt attgccggag gttgaggcca      3660
     tccggatacc ccgctgctat ctcggctgcg ccaagtctgc agaagtcgac gcgctggaag      3720
     tacacatctt taccgatgcc agcgaacatg gattcggttg cgttgcatat ctgcgagcgg      3780
     tcatcagagg ggaggtccac tgcagcctaa tgatgtcacg ggcaaaggtg gcaccgataa      3840
     aacgtcagtc gattccacgt ctggagctga tgggtgctgt tctgggagcg cggatgaatc      3900
     aaacagtcct gagcacgcac tcctaccaga tcaaccgcac cgtcttttgg acagattccc      3960
     gcactgtgtg cagctggctc aattccgatc aacaccggta caagcaattc gttgcattcc      4020
     gggtcggtga gatccaagag ctgacgaaag tagcggactg gcgatggatt ccgaccaaac      4080
     tcaacattgc tgatgtgctg acgaagtggg gacaaggccc gccattacaa agcgagggtg      4140
     agtggttcaa cgggccgtct ttcttatacc agccgccaga aatgtggcca actcaagaat      4200
     cgacggtcga agaaacagaa gaagaagcga gaggtgttgt actgttccac gaggtcatcg      4260
     acgtccaacc aatttcacgc tggacaaaac tactgcgggt gacggccaac gtaatacgct      4320
     tcatcgccaa ctgccggcga aagagggaag gagagcctat agtggtcaca cgagccacgg      4380
     ctaagcagcg ccagttgatg ggatcgacgg cagtgaagta tgcgtcggtg acagcaccag      4440
     tcggccaaga agagctccag caggcggaaa caattctttg gcgtcaggca cagtgggaca      4500
     gttttccgga cgaaatgagt gcgctcactg gcaacttgaa gcgtgcgccg gatacaccga      4560
     tggagacggt caagaagagt agtcaaatct acaaaagttc accggttctg gacgacgaag      4620
     gagtcctgcg catggaggga aggctggcca actccgagga aagttccttc gacaagaagc      4680
     acccgataat tctgtcgcgg ttccacgaag taactcagag actgatccag cactaccacg      4740
     aaacgtttgg gcacgctaat tctgagaccg tgttcaacga gatgcgacag cgtttccaga      4800
     ttccaaagtt gcgcccagcg atacagcagg tggtaagaaa gtgcgtgtgg tgcaaggtca      4860
     acaagtgtcg tccacgatca ccgagaatgg ctccacttcc agttgagcga atcactcctc      4920
     atcttcggcc gttcagttcg gtaggtgtgg attaccttgg tccggtggaa gttacggttg      4980
     ggcggcgtag ggagaagcgc tgggtagcag ttttcacctg tctggcggtg cgggcggtgc      5040
     acctagaagt cgtgcacagt ctcacgaccg aatcatgccg aatggccatc actcgtttcc      5100
     agagcaaatt cggcaagcca gaacagatct tctccgacaa cgcgacatgc ttccggggag      5160
     cgagcaacga gatggtcagg atggagaaaa taaatcaaga gtgtgcggag gtcgtcagca      5220
     gttccagcac cgtctggaat ttcattccac ccggtacccc acacatggag tgtgggaacg      5280
     catggtgcgg tcggtggaag aggcgatgcg tgcgtttgac gacggaagga aattgaccga      5340
     cgagatcctg gtgacaacac tagccaaagc tgccgacatg atcaacacac gtcctctgac      5400
     gtacctgccg caggagtcgg gcgaaagtga agcgctgacc ccgaatcatt tcctacgggg      5460
     aacggtgtct ggcacagatc tgaaggtgga cgaaggatcg acgaataccg cagaatcatt      5520
     gcggatcata tacaaacgct cgcagttcct cgccgatcga atgtgggaga gatggagtaa      5580
     ggagtacctt ccgacgataa atcaacggtc gaaatggttc aacgagcaga agccgctgat      5640
     agagggcgac ttggtattcg tggtcgacgg aaagaaccgg aagtcctgga aaagaggtgt      5700
     agttgaggcg gtgatcaagg gctcggatgg aagaattcga caagtggacg tgagaacagc      5760
     cgatggtaag gtgctaagac gaggcgtggt caacctagcg gcgctggaga tcaggtaaat      5820
     ccgggaattc cggatgttac gggctgggg                                        5849
//
ID   BEL-127_AA-LTR repbase;    DNA;    INV; 740 BP.
XX
AC   supercont1.130;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-127_AA_;
KW   BEL-127_AA-I; BEL-127_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-740
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.130; Positions  368110  368849.
XX
SQ   Sequence 740 BP; 264 A; 106 C; 179 G; 191 T; 0 other;
     tgttgcgacg ccgcttggac acccctactt acggagcata agtggaacat gacagttcgc        60
     aacgcggtgg tagtggttag cgtaagagca taaaaaacag gttcgaagta gtagtaggca       120
     gcaggagtaa ataaaagcaa aagtgtagcg ggagaaatat agtgaattaa cgccattgca       180
     aattaaagtc ggttgtttga gaattttatt gcgaaataca tattattccg gtagttaatt       240
     agcgatcaac aggtcaaaat cggtgtgtaa agtgccttct gggaagtccg taagtgtacc       300
     tgaaaaggaa gaaaagaaaa taagtgcgaa aatctaggag aaaataatat ttgatttgct       360
     tgttatttac ttacctgtag atcgggattg ctacaaacta tttcaatagg aaatcgtagt       420
     taatctaaca gtccggtgga ttagaacgta agtagacctg aaatggaaag aagagagaag       480
     cattaattgg aaaattacaa cttaggcgaa gatcacacga ccaaaacagc tgattgaaga       540
     tagggtagtt ggaccttagt tcgacacctg caaagtggaa gagtaaaagg gagtctagag       600
     taaaaggaaa ccacttcttg tgagtagcaa ttatttggtc ttaataatgt aatttatata       660
     agaataaata aatttgcagt ttgagcatcg ccgaaaacaa cttggctgct gaggaaaatt       720
     ttggtttcca ctcgggaaca                                                   740
//
ID   BEL-128_AA-I repbase;    DNA;    INV; 3265 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-128_AA_;
KW   BEL-128_AA-LTR; BEL-128_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3265
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions 3322077 3325341.
XX
CC   'GGCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           501..2531
FT                 /product="BEL-128_AA-I_1p"
FT                 /translation="MAEEAKTIDEWQQKKQNVVDSVALLEYYVTNFDKEES
FT                 RKEQVEAWAEKLERFYDDFHRMAVKIEALSSEEDPIDLKGERQKFDSRYYG
FT                 LRAFYLKQMAKATSTSSSNLTQPGMSMNIRLPEINLPKFSGRLEEWCVFRD
FT                 SFQSAVGSRSDIGPVEKLHYLKGLIQGEAARILDPIKVSEQGYKDAWRALK
FT                 LRFENKRQLIKCHIKTLFDTPAMCEESSDELLALADRFEQQISVLKSLGEP
FT                 ADKWSSLLVYLLTIRLDPCTLREWENYCTRLDTDNIASVLGGIASTSSTIA
FT                 DDSTSMPSYVQMVNFLQNYSRVLHAVSSATFDTSLRQYTKSPTKSAGYLLA
FT                 SPPNKASNPIPDSSSPSKPERHCEKCGQNHFLFHCPEFQNLDVSRRTELVR
FT                 QGNMCMNCLRSSSHIAQTCSGTSCRVCSRKHHTLLHTDASDIMPTSNTQSA
FT                 DSTCYVAFEQVRPSTEPSKFVSQHLIQQPSTSTASVNPYFGVHDTSGNLQC
FT                 DLVSQSQAAITGTVFLPTALVNIRNSRGRTITACCLLDCASQRDYVSAGLC
FT                 DKLQLPQVQLPLPITVSGIGNTTTLVEHEAKVTVFSRMSPISVESSMLILP
FT                 SITTKLPHCSVNVHQWSIPHHVNLADPTFAVTSNVDMILGAAHFFHVLRDG
FT                 RIHLGNDLPLLQNTEFGWVVSGEYAGES"
XX
SQ   Sequence 3265 BP; 838 A; 880 C; 772 G; 775 T; 0 other;
     taatttggtc cttcgaaccg gatattggac cgccggtgtt gtgaaaagtg tccaccgaag        60
     gcctagaaga ggcaaaaaat cacgctactg atgcgagatc atcgtagcaa ccgagaaaca       120
     aggtgcaaag tttgactttg ccgctgtgaa gaaccagtaa aagtgcgcgg aaactgattc       180
     acgatagcgt ttcgacctca agaaccgcca tcacgatgtc gttagtgaac taacagaagt       240
     acgatttccc cagaaaatcc cccattttgc cttttaccgc gagtgaaatt gaacgaaaag       300
     tcaatctttc gtccccgtcg ttcaactccc gacggctgtt agtgtgtggt tatcttctgc       360
     tgctgaatgc acagtgggct aaagtggtga agtgggtgaa cgaaattcga acaagataaa       420
     gttttgcaaa tcaacaacat tttgattgtg agacattttt ttggtttttt ggcggtggaa       480
     aagtgtgttc ggaaagaaca atggcggaag aagcgaagac cattgatgag tggcagcaga       540
     agaagcagaa cgtagtggac tccgtggctt tgttggagta ctacgtgacg aacttcgaca       600
     aggaagagtc ccgcaaggag caggtagagg cttgggctga gaagcttgaa cgtttctacg       660
     atgacttcca tcgtatggct gtcaaaatcg aagccttgtc atctgaggag gaccctatcg       720
     atttaaaagg tgagcgacag aaatttgaca gtagatatta tggcttgcgc gcattctacc       780
     tgaagcaaat ggcgaaggcc accagtacct cttcttccaa tcttacccaa cccggcatgt       840
     caatgaatat tcggcttccc gagatcaatc tcccgaaatt cagcggccgt ttggaggagt       900
     ggtgtgtctt ccgcgattca tttcaatctg ctgtcggttc ccggagcgat atcgggcctg       960
     tcgagaagct gcactacctc aaaggactta ttcaagggga agcggcaagg attcttgacc      1020
     ctataaaagt cagcgagcag ggctacaagg acgcatggcg ggcactcaag ttgcgcttcg      1080
     agaataagcg gcagctcatc aagtgccaca tcaagacgct cttcgatact ccagcaatgt      1140
     gtgaggaatc gtccgatgag ctcctggcgc tggccgatcg cttcgaacag caaatctccg      1200
     tgctgaagag tttgggtgaa ccagccgaca agtggagttc gttactggtc tacctactga      1260
     cgattcgcct cgatccttgt acactccgag aatgggagaa ctactgcacc aggctcgata      1320
     ccgacaacat agcttcggtt ctgggaggaa tcgcttcaac atcgagcacc atagctgatg      1380
     attcgacttc catgccgtcg tacgtacaga tggtgaactt cctccagaac tattcgcgtg      1440
     tcttgcatgc tgtctcctca gccacgttcg atacttctct tcgtcaatac accaagtccc      1500
     cgacaaaatc agcaggatat ctcctagcat cgccgccgaa caaggcatct aacccgatac      1560
     cagacagttc cagtcccagt aagccggaaa ggcattgtga aaagtgtggt cagaatcact      1620
     tcctgtttca ctgtccagag ttccagaacc tagacgtcag ccgccggacc gaactggtaa      1680
     ggcaaggaaa catgtgcatg aattgtttgc gctcctcttc ccatatcgcc caaacatgct      1740
     cgggcacaag ctgccgagtc tgctctcgaa aacaccacac gctgcttcac acggatgcca      1800
     gcgatatcat gcccacttct aacactcagt ctgctgattc gacttgttac gtcgcctttg      1860
     aacaagtccg accaagtacg gagccatcga agttcgtttc tcagcatcta attcagcaac      1920
     cgtcaacttc tactgcttcc gttaatcctt atttcggtgt tcatgacact tccgggaatc      1980
     tccagtgcga tctggtctcg caatcccaag ccgcgatcac tggaaccgtc tttcttccaa      2040
     ctgcgctcgt gaacatccgg aatagtagag gccgtaccat caccgcttgt tgtttgctgg      2100
     attgtgcgtc ccaacgagac tacgtgtctg ccggactgtg cgacaagcta caactgccac      2160
     aagttcaact accactacca atcactgtca gcggaattgg caacactacc acgcttgtcg      2220
     agcatgaagc taaagtgacc gttttctcac ggatgtcgcc aatatccgtg gaaagttcga      2280
     tgctgatcct cccgtcgatt accacgaagc tgccacattg ttccgtcaac gttcatcagt      2340
     ggtcgatacc acatcacgtt aacctcgctg atccaacctt cgctgtcacc agtaacgtcg      2400
     acatgatcct gggagctgcc catttcttcc atgttcttcg tgacggacgg attcatctcg      2460
     gcaacgatct gcccttgctc cagaacactg aattcggatg ggtggtctcc ggagaatatg      2520
     ctggagaatc atgaaaattc cagtagccgt tgtatcaaaa atccaggcac cctcggagaa      2580
     cctaccgaga atgctcctct ctggtcgagc ggaccgtcat gtcttgacga attggaccac      2640
     tcgaggctac ccaagcacgt tccagccaaa tcaaacgctt ttgaaaactc caaagacagc      2700
     tcgatcgtcc tgccattaac tgagaaggtt tatcacgaaa ttaatcttca gttcctgcac      2760
     ccccagcttg tgaacgacga actcctcgtg acgagagagc accatgttga tcccggcttg      2820
     ccgctgtcat gctcttcggc agaaatgtcg gtctcttggc ggccggaatc tggtacagca      2880
     gagcgtttac cgttgcataa ttcccgtcca cgcaaaacca ccaacacttc tccggtgcga      2940
     gtcacccaag tgcagccttt cgaatccgtt ggcaccgttc ttgccaccaa ggttgttcac      3000
     caagatattc aacgccagcc tcaggcaatt caacagtcac aggagaagaa tcgcgcgcat      3060
     ttactgcgac gcgacaagca gcacagatgt tccgcttttc cagcaatgat ccgttaccat      3120
     ccatggaaat cccggagctg gaaagtggcc tgtgccagct gcgccaaacg tgaacccaac      3180
     gcctattcta gctgacgacc tctgtccgaa gaagttcctc cgccgatgat aaggaaaaat      3240
     cacgaaattt cattggcggc cggaa                                            3265
//
ID   BEL-128_AA-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-128_AA_;
KW   BEL-128_AA-I; BEL-128_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-399
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions 3321678 3322076.
XX
SQ   Sequence 399 BP; 129 A; 79 C; 87 G; 104 T; 0 other;
     tgtttaaaac cctcatgaaa agggaatgaa atttccaaca tattatttgt aatatcatac        60
     accgcaccca gtgtgcaacc ccactgtgca aagtcaaaca cgcagctgtc aaacagcgca       120
     gcatagaaac ttgtaaatag tagcataaga gaaataaatc agttgaaatc gtcacttcgc       180
     cgcgtttgca cacacaattt gttgctttcg gtttttgtgg tgtccgaatg gtaaccgcgg       240
     gttgataaat cgattcttat cgtcccgttt gtgctgtgta gtgtggtggg aaaacatttc       300
     cccaagaaat tgagccaaga agtgcaaaga aaggccaatt ccagtgagag gaacaaaatc       360
     ctcatacgtt agtaagaaga gtggttaagt gcttgaaca                              399
//
ID   BEL-129_AA-I repbase;    DNA;    INV; 6146 BP.
XX
AC   supercont1.127;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-129_AA_;
KW   BEL-129_AA-LTR; BEL-129_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.127; Positions 1984632 1990777.
XX
CC   Positions [5173-5745] - Integrase core
CC   'AGTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..6144
FT                 /product="BEL-129_AA-I_1p"
FT                 /translation="MMHSETNPSSDRNCTRCSKSDSAENMVGCDLCDAWVH
FT                 FGCAGVTASIENHSWKCDKCKEKILEDTTQRSVSSRTSSVSSKASQRVQLR
FT                 LQMLEEQRQLRLKVLEEEEAARKKRAAEEEAARRKRAQEEAEFIRQKYELL
FT                 MDETPSDLETYGHDGKEQNMGENIEKWLDVGRGLVGPVTSPPPAVEGRQTQ
FT                 QEIMPPSSVPSQPRPDTFGQTQVNAAPTSTSTPQAYRNSVLIPIEASASGF
FT                 APETMTSINQSQMHQSRSAVEGLNTGLRTSFGAEIPKAATVSFNPQISYVA
FT                 NPAADVQPTWMNNYNTTPIVSITQPIITCQSDFIGQQYPTYTAANPTSGPG
FT                 APVGSMFVPGLAPHSHDGSQWYNWNQRQPAVSQTNRFGVTNSYNQPGPSAV
FT                 QIAARQVMSRDLPKFTGDPEGWPMFRSAFYNTTQACGYSHAENLSRLQRSL
FT                 DGPALVSVKSRLLLPESVPQVMDTLEKLYGRPEILIHSLLKKLRDVPAPKT
FT                 ENLRSIIDFGLAVQNLVDHMTIAKLTEHLCNPMLLHELVEKLPAFWKMQWS
FT                 SFKQTRPEVNLATFSSFMSVLVSTASDVTLPDLSTPVSTKIEKGVRNKSKL
FT                 FVHSDTIQSSREAPKEKREEPAMKTCTFCTNASHEIASCSQFKALDIDARW
FT                 KAMRLKGLCRICLVPHRRWPCRSGKVCEIDGCRLRHHALLHSHLPPVTQSS
FT                 AATQGNVAHQNHHLVLPCTLFRYLPIVIENNGRKVHTFAFLDDGSSSTLLE
FT                 AGIAAELGVEGPTDSLFLTWTGNVSREEKQSQRVSIVVSGRGLKNQFKLNN
FT                 VRTVQRLKLPSQNLQYERLIQAYPHLKGLPIQSYSNAVPGMIVGVEHARLL
FT                 STLKIREGRETDPIAAKTRLGWCVFGKQAGGEDSVQQLSFHGELRDENRHL
FT                 HELMKQFFGIEEASVTIKPEAEEDTRALQILQETTQRVSKGFECGLLWKFK
FT                 KFSFPDSFPMAVKRAVALERKLAKNPVLKGKVSELIASYEEKGYAHRITED
FT                 ELQTTQRSKVWYLPLGFVQNPKKPEKVRLIWDAAARVEGVSFNDMLLKGPD
FT                 MLVSLFAVLLRFRQKNVAICGDIREMFHQISIRSPDNQAQRFLYKPSPDRP
FT                 PQIYVMDVATFGATCSPCQAQYVKNQNANDLADRYPTAAEAIIKAHYVDDY
FT                 LDSTDTVDEAVQLLSDVKYVHSQGGFEIRNFCSNSTEVLRRMGQTKSPDYK
FT                 SMNLDQTNDVERVLGMVWRPIADVFSFDISIRPDILKLLDESIVPTKREVL
FT                 RTVMSLFDPLGLLAHYIIQGKILMQDIWRSGTDWDEPITENLRGQWYRWSQ
FT                 LLWKLNTVQVPRCFFSGVSKEALNRLQIHVFVDASDTAYSCVAYLRIVESG
FT                 APRCSLVAAKTKVAPLKPLSIPRLELQAAMIGSRLINSLCTSLNLQIKQRF
FT                 LWVDSSTVLAWLRSDSRRYHPFVAFRIGEILSLTTVNEWHKIRSKRNVADE
FT                 ATKWGSGPQFDPESRWYKGPSFLWESEEDWPAEEQHSVTTVDLRASFLHVH
FT                 VVKELIIDVDRFSTWERLVRTIAYVQRAAKNFRRKTATGILTNNEWRAAEN
FT                 LLWKQVQMQNYPDEYTVLHNNKLNTDKEPMFLSKDSPLHTQSPFLDDDGVI
FT                 RMNSRISAAPTTPYEAKFPILLPKGQRVITLLVDSYHRRFLHGNNETVFNE
FT                 MRQQFRIPHLRSVIKQVARVCQRCRIKKAVPLPPMMAPLPQQRLTPFVKPF
FT                 SHTGVDYFGPVLVKQGRSLVKRWIVLFTCLTIRAVHLEVAYSLSTQSCVMA
FT                 IRRFIARRGSPETFYSDNGTNFIGANRLLIQQLRTVHESCAVTFTNAKTSW
FT                 RFNPPLAPHMGGPWERMVRSVKSAMAEIADYHKHPSDEVLETVILEAESVI
FT                 NSRPLTYVPLDSEEGDALTPNHFLLYGTKGVQQPSRTLTDQMSNLRDSHTL
FT                 AQNMVDRFWQRWVSEYLPDLTRRTKWHQPTRPLQPGDVVLVVDESRRNGWT
FT                 KGRVIDVQKAKDGQVRSAVVRTVQGVIKRPAVKLALLEVAGTEGIPKESQG
FT                 ASELHGRG"
XX
SQ   Sequence 6146 BP; 1789 A; 1371 C; 1517 G; 1469 T; 0 other;
     aactttaaga tttcaacggt tggattgtgg catctaaatt aaatgatgca ctctgagact        60
     aatccgagca gtgatcgaaa ctgcacccga tgtagtaaat cggactcggc ggagaatatg       120
     gtaggttgcg acctgtgtga tgcgtgggtg cattttggat gtgcaggtgt aactgcctct       180
     atcgaaaatc acagctggaa atgtgataag tgtaaggaga agattttgga agacaccacc       240
     caaagatcag tatcttcgag gaccagttcg gtaagcagta aggcctctca acgtgttcaa       300
     ttacgactgc aaatgttgga agagcaaaga cagctgcgac tgaaagtttt agaagaggaa       360
     gaagcagctc ggaagaaaag agccgctgaa gaggaagccg cccgtaggaa acgggctcaa       420
     gaggaagctg agtttattcg ccagaagtac gagctattga tggatgaaac accatccgat       480
     cttgagactt acggacatga cggaaaagag caaaatatgg gtgaaaacat tgagaaatgg       540
     ttggatgtgg gtcgtggttt agtaggacca gttacgtcac caccgccagc ggtagaaggt       600
     aggcagactc agcaagaaat aatgcctcct tcatcagtgc ctagtcaacc tagaccagac       660
     actttcggtc aaactcaagt aaacgcggca ccgacttcta cgtctacccc tcaagcctat       720
     aggaattccg ttttgatccc catcgaagcg tcagcgtccg gattcgcgcc agaaacgatg       780
     acgtcgatca atcaaagtca gatgcatcag tctagatcag cagtagaagg attaaatacg       840
     ggattacgta cgtcgttcgg tgcggaaata ccgaaagcag caacagtttc gttcaatcca       900
     caaatttcat acgttgccaa tccggcggct gatgtgcaac caacgtggat gaacaattac       960
     aatactactc ccatagttag tattacgcaa ccaataatta catgtcagtc agacttcatc      1020
     ggccaacaat atccgaccta tacagcagct aatccaacga gtggcccagg ggcacctgtg      1080
     ggaagtatgt ttgtacctgg tctggctcca cacagccatg acggttcaca gtggtacaat      1140
     tggaatcaac gacaaccggc agtttcacaa acaaataggt ttggagttac aaattcatat      1200
     aatcaaccag ggccctctgc tgtgcagata gcagcacgac aagtcatgtc tcgtgattta      1260
     ccaaaattca ctggagatcc agagggatgg cctatgttcc gaagcgcctt ttacaataca      1320
     acacaagctt gtggttattc gcatgcagag aatttgtcta gattacagcg cagtttggat      1380
     ggtcctgctt tggtatctgt aaaaagccga cttcttctac cggaatcagt accgcaggta      1440
     atggatacat tggaaaaact gtatggtaga ccggagattc tcatccactc tctgttaaaa      1500
     aaattgcgcg atgttccagc accgaaaacc gagaatctga gaagtataat cgatttcggt      1560
     ttagcagtac aaaacctggt agatcatatg acgattgcaa agctgacaga gcatttgtgt      1620
     aaccccatgc tcctccatga gcttgtagag aagcttcctg ccttttggaa aatgcagtgg      1680
     tcgagtttca aacagactag acctgaggtc aacttggcga ccttcagctc gtttatgtca      1740
     gtcctggtca gtaccgcctc cgacgttact cttccagacc tgtctacacc ggtctcaacg      1800
     aaaattgaaa agggagtccg caacaaatca aagctgtttg tgcattcgga tacgatacag      1860
     tcgtcaagag aagctcctaa agagaaaagg gaggaacctg caatgaaaac atgtacgttt      1920
     tgtacaaatg cgtcacacga aatagcaagt tgcagccagt tcaaagcgtt agatattgat      1980
     gcgcgctgga aggcgatgcg actgaaggga ctatgcagaa tctgccttgt tccacaccgt      2040
     agatggccat gccgttcggg aaaagtatgt gaaattgatg gatgtcgtct gcgccaccat      2100
     gcactattgc attctcattt gcctcctgtg acccaaagca gtgctgctac gcaaggaaat      2160
     gtggcccacc agaaccacca tctagtactg ccatgtacac tttttcggta cttgccaata      2220
     gtaatcgaaa ataacggaag gaaggttcac acctttgcgt tcttagacga tggatcatca      2280
     tcaacgttac ttgaagctgg aatcgctgct gaattaggag ttgaaggacc aacagactca      2340
     ctgttcttga cgtggacggg aaacgtctct cgtgaggaga agcaatcaca acgtgtctcg      2400
     atcgtcgttt caggacgtgg tctaaaaaat cagttcaagt tgaacaatgt gagaaccgtc      2460
     cagaggttga aactaccaag tcagaatcta cagtatgaga gactaattca ggcataccct      2520
     cacctcaagg gtctgccaat ccagagttac tccaacgctg ttcctggaat gattgtagga      2580
     gtcgaacatg cccgtttact gtcaacgttg aagattcgtg aaggcaggga gacggaccca      2640
     atagccgcga aaactcgtct tgggtggtgc gtatttggta agcaggcagg aggagaagac      2700
     tctgttcaac aactgagctt tcacggagag ctgagggatg agaaccgcca tcttcatgaa      2760
     ctaatgaaac aattcttcgg aattgaagag gcaagcgtga cgatcaagcc tgaagcagag      2820
     gaggacacac gggccttaca aatattgcag gaaacgacgc aaagagtcag taaaggtttc      2880
     gagtgcggtc tgctctggaa attcaaaaag ttcagttttc ctgatagttt tccaatggct      2940
     gttaagcgcg cagtggccct ggagagaaag ctggcaaaaa atccggttct caaaggaaag      3000
     gtgtcggaac taattgcatc atatgaagag aagggttatg ctcatcggat cactgaggac      3060
     gagcttcaaa caacacaacg cagtaaagta tggtacttgc ctctcggatt cgtacagaat      3120
     cctaaaaagc cggagaaggt ccgcttgatt tgggacgctg ctgctcgggt tgagggtgtc      3180
     tctttcaacg atatgctctt gaaaggaccg gatatgctgg tatccctgtt tgcagtgttg      3240
     ctacgatttc gtcagaaaaa cgtcgccatt tgtggcgata tcagagaaat gtttcaccag      3300
     atatccattc gcagtcccga caatcaagcg caacgtttcc tttacaaacc ttctccagat      3360
     agacccccgc aaatctacgt tatggatgtg gcaacgtttg gcgccacctg ctcaccttgt      3420
     caagcgcagt acgttaaaaa tcagaacgct aacgacttag cggaccgata tccaactgca      3480
     gcagaagcaa taataaaggc tcattatgta gacgactacc tagatagtac ggatactgta      3540
     gatgaggcgg tacagttgtt gtctgatgtg aaatacgttc attcccaagg agggttcgaa      3600
     attagaaatt tctgctctaa ttcgacagag gttcttcgac gaatgggtca aacaaaaagt      3660
     cccgactaca aatcgatgaa tctagatcaa actaacgacg tagaacgagt tcttggaatg      3720
     gtctggagac cgatcgcgga tgtgttttcg tttgatattt ccatcagacc ggacatcctg      3780
     aaactcctgg atgagtcaat cgtacccacc aagcgagaag ttctacgaac ggttatgtcc      3840
     ttattcgatc cgttaggttt gttggcgcat tacataatcc aaggaaaaat cctcatgcag      3900
     gatatctgga ggtcaggaac agactgggat gaaccgataa cggaaaatct gcgaggacag      3960
     tggtacagat ggagtcagct gttgtggaag ctcaatacag tccaggtccc acgatgtttc      4020
     ttcagtggag tgagcaagga agcactgaat agattgcaga tacatgtgtt cgtcgatgct      4080
     agtgatactg cgtattcgtg tgttgcctat ttgcgtattg ttgaaagcgg tgcacctcga      4140
     tgttctctgg tcgccgccaa aactaaagtg gcaccactaa agcccctttc gataccgcga      4200
     ctggaactac aggcagctat gattggtagt cggctaatca acagtctttg tacatcactc      4260
     aatcttcaaa ttaagcagcg tttcttgtgg gtggatagtt cgacagtact ggcatggttg      4320
     cggtccgaca gtcgccgtta tcaccctttc gtagcattta gaattggaga aattctaagc      4380
     ctgaccaccg ttaatgagtg gcataagatc cggtccaaaa ggaatgtcgc cgatgaagca      4440
     acgaagtggg ggtcaggacc acagttcgat cctgagagtc ggtggtacaa aggcccatcg      4500
     tttttgtggg agtctgaaga ggattggcca gccgaagaac aacattcagt aaccacagtc      4560
     gacttacgag cttccttcct acacgtacat gtggtaaagg agttaatcat cgacgtcgat      4620
     agattctcta catgggaaag attggtaaga acgatagctt atgtacaaag agcagcgaag      4680
     aactttcgtc gaaagacagc aacagggatt ctgaccaata acgaatggcg tgctgcagaa      4740
     aatctactgt ggaaacaagt acagatgcag aattacccgg acgagtatac tgttttgcat      4800
     aacaataagc taaatacgga taaagaacca atgttcttaa gcaaagatag tcctctccat      4860
     acgcagtcac ctttccttga tgacgacggc gttattagaa tgaatagcag aataagcgct      4920
     gctcccacca ccccttatga agctaagttt cctattctct taccaaaagg tcaacgggta      4980
     attacactcc tcgtcgacag ctaccatcgc cggttcttac acggaaacaa tgagacagtt      5040
     ttcaatgaga tgcgtcaaca gttcaggatt cctcatctgc gttcggtgat caagcaagta      5100
     gcacgggttt gtcaacggtg ccgcattaaa aaggcagttc cactaccacc gatgatggcg      5160
     ccactgccac aacaacgact tactccattc gtcaagccgt tttcacatac gggtgtggac      5220
     tattttggac ccgttctggt gaaacaagga aggagtttag tgaaacgctg gattgtattg      5280
     ttcacctgcc tcactatcag agcagtccat ctggaagttg catatagcct ctctactcag      5340
     tcgtgtgtga tggccatacg ccgtttcatc gcccgccgag gttcaccgga aacgttttat      5400
     tcggacaacg gcactaattt tattggagcg aatcggttac taattcagca attgcggact      5460
     gtacacgaaa gttgtgcagt cacatttaca aatgcgaaga cgagctggcg gttcaatcca      5520
     cctctggctc ctcatatggg gggaccatgg gagagaatgg tgcggtcagt caaatcagcc      5580
     atggcggaga tagcagacta ccacaaacat cccagtgacg aagtactcga aaccgtaatt      5640
     ttggaagcag agtcggtcat caattctaga cctttaacat atgtcccctt ggattcggaa      5700
     gaaggggatg cactaactcc gaatcacttt cttttgtatg gaacaaaggg tgtacagcaa      5760
     ccttctcgca cactaaccga tcagatgagt aatctcagag atagtcacac attggcgcaa      5820
     aacatggtgg atcggttctg gcagagatgg gtgtctgaat acttaccaga tctaaccaga      5880
     cggacaaagt ggcatcaacc aacaagacct ctgcaacctg gagacgtcgt cttagtggtg      5940
     gatgaaagcc gccggaacgg gtggactaaa ggcagagtca tcgatgttca gaaggcgaaa      6000
     gacggccaag tacgtagtgc ggtggttcga accgtacaag gagtcatcaa acgccctgca      6060
     gtaaaactcg cgcttcttga ggtggctggt acagagggca tacccaagga gtctcaagga      6120
     gcttcggaac tacacggaag ggggga                                           6146
//
ID   BEL-129_AA-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   supercont1.127;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-129_AA_;
KW   BEL-129_AA-I; BEL-129_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.127; Positions 1983984 1984631.
XX
SQ   Sequence 648 BP; 207 A; 108 C; 136 G; 197 T; 0 other;
     tgttgtgaga acccctgcgc tctcactatg accataaaac gtgagtcccg aatgctccac        60
     gagccgtcag tctgacatcg atatcaggaa tataacgatg catgatcgta aaacgtcaga       120
     tggagcatga aatgggaacg tgtttatgct gcggccgtag ataacaataa ccatagcaga       180
     gagaagtaga gaattgttcg attttggagt tacttaatag actattcagt gaaactgtaa       240
     gttaatatta ctaatttgta ccatgcattt ctaatagtat tatttacagt atcagattca       300
     gtgttattga gagtgaattc gccaagttgc agtcagttag taaactagct cgattagtga       360
     tgtaagtcag tttgaaattg gaggtttcaa tgaagtttaa ttagaaatta atataaaata       420
     ttttttgtat agctcaagtc tgcttcccag taagatacgc acagttattc gcggaggttc       480
     tggacaggtt tggttaaatc gcactgaaat gtaagaattt gaatttatga aaatgagccc       540
     acgaccacta aagaattatt tcaataaatt tcagcttaaa gctgctgctg ccagtaacgt       600
     agttgctacg agaggtgata tttccatcca gaactttctg tccgaaca                    648
//
ID   BEL-12_AA-I repbase;    DNA;    INV; 5648 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_AA_;
KW   BEL-12_AA-LTR; BEL-12_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions 1029555 1035202.
XX
CC   Positions [4698-5255] - Integrase core
CC   'GAAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3363..5615
FT                 /product="BEL-12_AA-I_4p"
FT                 /translation="MLLSRPRKDLDTGAMEVENRVGSADTNTLEEYMDALD
FT                 ESVQKFGRNTCPRCYFPQHAHNEMVDLQLHIFVDASEEAYSCVAYFRAEFV
FT                 GGVEIALIGGKAKVAPLKALSIPRLELMAAVIGVRLLKTIRTAHSLSINKI
FT                 VLWSDSKTVLSWINSDHRRYRQFVACRIGEILSKSDAAQWRWVPTKENPAD
FT                 MATKWGKGPNFSPDSHWFKGPKFLRSPESYWPTETKPTDEMTTEEMRVCLV
FT                 HTENLKITVIDWNRFSSWTRLLRSIAFVVRFCQNLRRKVKKKPLTDGILTQ
FT                 KELEQSELTIFRMLQNEEYPDETAILLEGRKKNSLVRFERTSKIRKLSPFM
FT                 DDAGLIRSDSRISVACFVSYDTRFPIILPKESVITRLLLEWYHRRFLHANK
FT                 ETIVNEVRQRFHIPAMRALVRKIAKMCQLCKIRKAVPEVPRMAPLPAARLK
FT                 PFERPFSYVGIDYFGPISVRVNRSTMKRWIALFTCLTTRAVHLEVAHSLST
FT                 ESCKQAIRRFIGRRGAPVEIRSDRGTNFIGASNDLQKEMMDVDRQLAETFT
FT                 NTQTRWVFNPPAAPHMGGAWERLVRSVKVSMAAIKTTEIPKEEALVTFIVE
FT                 AESVVNSRPLTFMPLETEQQEALTPNHFLLMSSTGVVQQPKSSMDPKVVCR
FT                 GDWELCRSMVDQFWRRWIREFLPTISRRTKWFTDVKPIEVGDLVIVVEEKI
FT                 RNGWIRGRIVKLKEGLDGRVRAAVVQTATGLMERPVSKIARLDIDGDKAAS
FT                 "
FT   CDS           join(44..1621,1625..2704)
FT                 /product="BEL-12_AA-I_2p"
FT                 /translation="MSARNRKVGTGKSAQWQACVDVDTERMVCCCHCKSWW
FT                 HFECVGVNDSIATSDRTFTCPKCQRPPLQIPGSTKTSSVGKSNSKPGSLIS
FT                 GRTRSSVRARRAQLELEKLEAQKALALKRLELEGKKLQLEAEVLEESFRLR
FT                 DEIEREGGSHKASVFSQQSSRSKVEEWQKRQEEILCSTIVTPAQITSVDSL
FT                 QKGTMANVEVSQGGETQPAKHLLDRAFQGISLEDSLSDGPLGGIIGRTSDV
FT                 VAQSTTISKLGLPPASYKVPGVSSNNQVSLGFVYSQSALNRPSNEFNIPVS
FT                 TNPSFPPVQSQITGYAEHPLASNTRVFPVVVSSKSDRRIDECSRSLEVETN
FT                 QAVGENPIQPREEQPSHGRREHSTRCPDPQMLSNPGMNVVDYAAPSLYQQG
FT                 GGPSPQQIAARQVISKELPIFTGDPEDWPLFISSFTNTTRACGYSEAENLA
FT                 RLQRCLKGNALEAVRSRLLLPVAVPHVIATLETLYGRPELLIHSLLQKIRG
FT                 VPVPKQDRLDTLIGYGMAVQNLSDHLEAGGLAHLNNPMLLFELVDKLPASM
FT                 KLDWSLYKQRCVEVNIRTFSQYMATLVRAATDVTLHYNPKQQVHQQQQVQR
FT                 GTKSGKDRDFCGAHSTEEALKTPTREDTLTKGTEAKVERMIPACLLCKDPD
FT                 HRVKNCSVFAKKTLDERWKLTGLLGLCRICLGKHGKRTCRIQKKCEVDGFA
FT                 LKDVRTVHKLDLPRQTLRYEQLAQSFPYLNGLPVKGYENALPQILIGNDNA
FT                 HVTATLKMREGNAGEPIAAKTRLGWTVYGLQNESIDSAHSFHICECKDGPA
FT                 LHDLVKNFFCLENLGVEAVSFPESDDVQRAKQILQTTTKRVGQRFETGLLW
FT                 KFDSFEFPNSYPMAVRRKFVFFVMRQLKWMAFR"
XX
SQ   Sequence 5648 BP; 1616 A; 1201 C; 1507 G; 1324 T; 0 other;
     aaatctaaaa gattgtggtc cgctttattg agcttcattt ccaatgagtg ccagaaacag        60
     aaaagtagga accggcaaga gcgcgcagtg gcaggcgtgt gtagatgtcg ataccgagag       120
     gatggtgtgc tgctgccatt gtaagtcgtg gtggcacttc gagtgcgttg gagtgaacga       180
     cagtatcgct acatcggatc gaacattcac ctgtccgaag tgtcagaggc caccattaca       240
     aataccaggg agtacaaaaa cgtcgagcgt tggtaagtcc aatagtaagc cgggtagtct       300
     aatatccgga aggaccagat ccagcgttag agctagacgg gctcagctgg aattggagaa       360
     actggaggcg caaaaagctc tagccctaaa acgtttagag ttggagggaa agaagttgca       420
     gttggaggca gaagtcctgg aagagtcttt ccggctgcgt gatgaaattg agagagaggg       480
     tggtagccat aaagcgagcg tgttttcaca gcagagctca cgtagcaagg tagaagaatg       540
     gcagaaaagg caggaggaga ttctgtgttc gacaatcgtg acccccgcgc aaattacctc       600
     ggtagatagt cttcagaagg gaaccatggc gaatgtagaa gttagtcagg gcggcgaaac       660
     gcagccggct aaacatctcc tagatagggc atttcaaggt atttccctgg aagacagctt       720
     aagcgatggt cctttaggcg gtataatcgg tagaacgtca gatgtcgtag cacagtcaac       780
     tactataagt aagttaggac ttccaccagc tagctataag gtaccaggcg tgagcagtaa       840
     caatcaagtt tcgctcggat ttgtgtattc acagtctgct cttaatcgac cctctaatga       900
     attcaatatt ccggtgtcaa caaatccttc atttcccccc gttcaatccc aaataaccgg       960
     gtatgctgag catccgcttg cgagcaatac tcgagtcttt cctgtggtgg tgagttcaaa      1020
     aagtgataga agaatcgatg agtgtagcag atcgctagaa gtggaaacaa atcaagcagt      1080
     aggtgaaaat ccaatccagc ctcgagagga acaaccgtcg catgggcgca gagaacactc      1140
     cacccgatgt ccagatcctc aaatgctgtc gaatccaggg atgaatgtag tagactatgc      1200
     tgccccgagc ctttatcagc aaggcggggg accaagccca cagcagattg ccgcccggca      1260
     agtaatttca aaggaattgc ccattttcac cggagaccca gaagactggc cgctattcat      1320
     cagctcgttt acgaacacaa cacgagcatg tgggtattca gaagcagaga atttggccag      1380
     gcttcaacga tgtttaaagg ggaatgcact agaggcagtg cgtagtcgat tgcttcttcc      1440
     agtagcggtt cctcatgtta tagctacact tgagacgctg tatgggagac cggagctgtt      1500
     gatacactcg ctactgcaga aaattcgtgg agttccagtg ccgaagcaag atcgtcttga      1560
     tactttgatc gggtatggca tggcggtaca gaatcttagc gatcatctag aagctggagg      1620
     ataattggct catctcaaca atccaatgct gctttttgag ttggtggata agttgccagc      1680
     tagcatgaag ttagactggt ccctgtacaa gcaacggtgt gtggaagtga acattagaac      1740
     gttttcacag tacatggcga ccttggtacg agcagcaacg gatgtaaccc ttcactacaa      1800
     tccgaagcag caagtacatc aacagcaaca ggttcagcga ggaacaaaaa gcggtaaaga      1860
     cagggatttt tgtggagctc actctacaga ggaggcactg aaaacaccaa cacgagagga      1920
     cactctaacc aaggggaccg aagccaaagt tgagcgaatg attccagctt gtctgctctg      1980
     caaggatcca gatcatcgag tgaagaactg ttctgtgttc gccaaaaaga cattggacga      2040
     gcgttggaag ctgacaggac tactagggtt gtgtcgtatc tgcttaggca aacacggaaa      2100
     acgtacttgt aggatccaga aaaagtgtga ggtcgacgga ttcgctttga aagatgtgcg      2160
     cactgtgcat aaattggatt tgccaagaca aacacttcga tacgagcagt tggcgcagtc      2220
     attcccgtat ttgaacggtc taccagttaa gggatacgaa aacgcgcttc cccagattct      2280
     catcggcaac gataatgctc atgtcacagc gacgttgaaa atgcgtgagg gaaatgctgg      2340
     agaacctatc gctgccaaaa cacgactcgg ctggacagtg tacggattgc agaacgaaag      2400
     catcgatagt gctcacagtt tccacatatg cgagtgcaag gatggaccag cgctgcacga      2460
     tctagtaaag aattttttct gcctagaaaa cttgggtgtc gaagccgtat cgtttccgga      2520
     gtcagacgat gtgcagcgag ctaagcaaat acttcaaacc accacgaagc gtgtaggtca      2580
     gcggtttgag accggacttt tgtggaagtt cgattccttt gagtttccga atagttatcc      2640
     gatggcagtc cgacgaaaat tcgtattttt tgtgatgcgg cagctaaagt ggatggcgtt      2700
     tcgatgaata caatgctgct gaagggacca gatctcttga acactctgtt aggggtttta      2760
     tttggatttc gggagaagcg gatagcgatt tgtgccgatc tcatggagat gtttcatcaa      2820
     attcaaattc gacctgcgga tcgacatgcc cagcgcctgt tatggcggga gaacccctca      2880
     caggaaccgg atgtctatct gatggatgtc gcaacgttcg gagccacctg ttccccgtgt      2940
     tctgcccagt tcgttaagaa caaaaatgcc gaagaacatg catctgaata tccagaagcc      3000
     gcggaagcta ttgttcggaa gcattatgtt gacgattatc ttgacagcgc agatacggtt      3060
     gaggaagcag tgaaaatagc atcggaagtt agacacgttc actcgctagg agggttccat      3120
     ttacagaact ggttatcgaa ttcaaaggaa gtcctggcac gagtcgggga ggaccaactg      3180
     gtatacgaga agagtttaca gttagacaaa agcgactcga cagagagaat ccttggtatg      3240
     ttctggaaac cagaagaaga cgtgttcgtc ttttcgtcga cgctggtgct tgatacggat      3300
     catcctacaa agcgacaagc tttacgagtt gtcatgagcc ccttcgatcc agctggcacg      3360
     ctatgcttct ttctcgtcca cggaaagatc ttgatacagg agctatggag gtcgaaaatc      3420
     gagtgggatc agcagatacc aatacacttg aagagtatat ggacgcgttg gacgaatctg      3480
     ttcaaaagtt tggacgaaat acgtgtcccc gttgctattt cccgcaacat gcacacaacg      3540
     aaatggttga tctacagttg catatatttg tcgacgcaag cgaagaagcc tactcatgtg      3600
     tagcatactt tcgtgcggag ttcgttggtg gagtagagat agctttgata ggaggaaaag      3660
     cgaaagtggc tccattaaaa gcgctgtcca ttccccgatt agagctgatg gcggctgtga      3720
     taggagttcg attgctaaaa accattcgca ccgcacactc attgagtatt aacaagattg      3780
     tactgtggag cgactctaaa acagttcttt cgtggatcaa ttcggaccat cgaaggtatc      3840
     ggcagttcgt cgcatgtcgt attggagaga ttttgtctaa gtcggacgcc gcgcagtggc      3900
     gatgggtacc aacaaaggaa aacccggctg atatggcgac aaagtgggga aaggggccca      3960
     acttttcacc cgacagccat tggtttaagg ggccgaaatt cctgcgatct ccagaaagct      4020
     actggccaac tgaaacgaaa ccaacagatg agatgacgac cgaggaaatg cgagtttgtt      4080
     tagtacacac agaaaacctc aaaataactg tgattgactg gaaccgtttt tcgagttgga      4140
     cacgattgct gcggtcgata gcgtttgttg ttcgattctg ccagaatctg cgaagaaagg      4200
     taaagaagaa gccgttaacc gacggaatac tgacacaaaa ggaattggaa cagtccgagc      4260
     tgacgatttt tcgaatgttg caaaacgaag agtatcctga cgaaacagcg atccttttgg      4320
     aagggcgaaa gaagaattcc ctcgtgcgtt ttgagcgtac cagtaaaatt cgtaagctgt      4380
     cacctttcat ggacgatgct ggattgatca gatcggattc cagaatttct gtcgcatgtt      4440
     ttgtgtcgta cgataccaga ttccctatca ttcttccaaa ggagagtgtg attacccgat      4500
     tacttctgga atggtaccac cgaaggtttc ttcatgcgaa caaagagact atagtcaatg      4560
     aagtgaggca gcggttccat ataccagcca tgagggcatt agtgcgcaaa atagcaaaga      4620
     tgtgtcagct gtgtaaaata aggaaggcgg tcccagaagt tcctcgaatg gcgcccctcc      4680
     ctgcagcaag attaaaacca ttcgagcgcc cgttctcata cgtggggatt gactattttg      4740
     gacccatttc agttcgggtt aaccgcagta cgatgaaacg atggatcgca ctattcacct      4800
     gccttactac tcgtgcagta catctggagg ttgcgcactc attatccaca gaatcttgca      4860
     agcaagctat ccgtagattt atcggacgca gaggcgctcc agtggaaatt cgcagcgata      4920
     gagggacgaa ctttattggg gcaagcaacg atttgcaaaa agagatgatg gacgttgacc      4980
     gacaacttgc cgaaacattc actaatacgc aaacgcgatg ggtgttcaac cctccagctg      5040
     cgcctcacat gggaggcgca tgggaacgtt tggttaggtc cgtcaaagta tctatggcgg      5100
     ctataaaaac gacagaaata ccgaaggaag aagcgttagt gacatttata gtagaagcgg      5160
     aaagcgtggt taattcaagg cctctaacat tcatgccttt ggagacggag cagcaggaag      5220
     cgctgactcc aaaccacttc cttctgatga gctccacggg cgtggtgcaa caaccaaaat      5280
     cgtctatgga tccaaaagta gtgtgtagag gagactggga actgtgcagg tctatggtag      5340
     atcagttttg gagaaggtgg atacgagagt ttcttccaac catatcccgt cgaactaaat      5400
     ggttcacgga tgtgaagcca attgaagttg gagacttggt gatcgtagta gaggaaaaaa      5460
     tacggaacgg atggattcga ggaagaattg taaagctcaa agaaggacta gatggaagag      5520
     tacgtgctgc tgtggttcaa actgcaaccg gacttatgga gcgaccggtg agcaagatag      5580
     cgcgattgga tattgatggc gataaagctg cttcgtagat gttcaaccag ccttacgggt      5640
     cggggaag                                                               5648
//
ID   BEL-12_AA-LTR repbase;    DNA;    INV; 625 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_AA_;
KW   BEL-12_AA-I; BEL-12_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-625
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions 1028930 1029554.
XX
SQ   Sequence 625 BP; 214 A; 103 C; 131 G; 177 T; 0 other;
     tgttgcggtg catcgcgctg aactcagttg gcaacacggg tatcactata ttatcgatag        60
     ggccaggagg aactaatagc tacctgaaga acaatagggt tgttttgacg cgatgattca       120
     ttgtacggta tttgctacat aaagttaagc tacaaaagaa gatttgattg gattaaagct       180
     aaattaacga agtaaagaat tcagataaat aaaatttgtt gaactgattg tgcatctgaa       240
     tcgtaagtag gcattattat cattaagaca taagttctct tattccgcta ttattcagta       300
     ggagacagct ggataaactt ggtgttcgcc ttgaagcgat actattgctc ctgagtaggt       360
     tagccatagc gtaagtaaac cgataaatcg tgtaagaatg catgattgaa atctattgaa       420
     actttcatat acagaaatta taagtcggca ctctaagaag accattcgga ctgactaaga       480
     aaagcttgga gattagggag accaatgtaa gatatttgga atgaacaatt tataaaatgc       540
     gctaattaat atatcagctt ttagcatatc tgcactacaa accgacggtg tacgtggctc       600
     aaaagacccc gaaagctcct caaca                                             625
//
ID   BEL-12_AnFu-I repbase;    DNA;    INV; 5291 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 664-664 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..5271
FT                 /product="BEL-12_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAEQRRVKMLSKQRISIEQSVDAIHSFVIHFQDDSSS
FT                 NEITVRLDTLEKLWEKFLKVQDDLEILDEDLFEDHLKKRTEMETKYYKAKG
FT                 FLEMKVKETSKEASKDNLAPCHLTEMMARVKLPDLKLPVFDGKQLNWLRFH
FT                 DLFQSMIHTSTTLSDTQKFYYLRSSLSETALQLIQSVPITGNNYNTAWNIL
FT                 LDHYNNADQLKQSYVEALFKPFVLKRESASDLRKLVDSFEANVKVLKQLGE
FT                 PTEHWDTLLIHLLSQQLDPTSLRDWKEAASSIPNMKYADLIKFIQRRITVL
FT                 DSLTPHGNNEAPKRATQRAVNIMAATNETRGCAFCSENHPIHTCSKFLKCS
FT                 WSDKENIIREKSLCRNCLRTGHRSQSCRSSSNCRSCGKRHHTTLCLKSQPN
FT                 LSRGQSTMIPQLNQRNEIDPSSNEEHTSIQSITCTSLGQSQRTVLLATASI
FT                 ILIDEKGMQHTARALLDSGSGTCLITNRLAQRMYCRREPISIRITGVGTTT
FT                 TFAKQKLQATLRSRLNNYSANIEMIILPTLTGNLPSTSVNVMSLNIPSNIQ
FT                 LADPAFDRPDQIDVIIGAEIFFDVLQFQHTIRLGNNLPILTNSQLGWIISG
FT                 PTPAESMQYSHSIVVNHCKTTIDDIQSQMETFWKVEEDPAASVLSIEERKC
FT                 EDHYTSNVSRSSTGRYVVRLPVNKEKLSRVVDNRNMAIRRLSYLLARFKRE
FT                 PELQQQYASFIEEYVQLGHMKRIHESEYNNTSVQHYYLPHHAVMRSDSTTT
FT                 KLRVVFDASSKTSSGVSLNDALLVGPTVQEDIRSIIIRARMHKVMVVADIK
FT                 MMYRQVLVDSRDTPLQLIVWKPNPDQPLETYELKTVTYGTASAPFLATRTL
FT                 IQLANDEGTSYPLAATILKRDFYVDDLFSGGANASEVSELVRQLIALLGKG
FT                 GLQLRKWASNNETVLQQVPTEHRAIDTSIEFSSDHVIKTLGLHWEPKSDTL
FT                 RYNIDLQLGLPNEQLTRRTLLSLIARIYDPLGLVGPVITTAKIFMQKLWTL
FT                 RNVDGTAVNWDQELPADIQQLWNSFAMSLPKINELRISRCVITTNPTSIQL
FT                 HIFADASQVAYGTCAYIRSIDSHGTIKVALLASKSRVAPLKTLSIPRLELC
FT                 GAVLAAELYVKLRASIHLPMECYFWLDSTVALHWLKAPPQKWNVFVGNRVS
FT                 KIQNATQETMWNHVAGIENPADCISRGLSATELLEYDLWWNGPAWLTSCQT
FT                 DWPVSSSLSEGLNEAMAEIRSSSDHTTILCCSSKEPTFIDQLISKFSRYSR
FT                 LLRVIAYCLRMNCKLRTTSEYKPFNTIVQSHELKEAEHRILRAVQQNSFAK
FT                 ELLQLQRDGHVSSSSRLKWFHPFISPEKLIRVGGRLSNTQQPYDCKHQVLL
FT                 PASHPLATLIVREYHEKHLHAAPQLLLNLLRQRYWIIGARSLAKRVVHNCI
FT                 TCARARPKLVEQLMSDLPSTRTTPSRPFSIVGVDFWGPINLAPIHRRAAPG
FT                 RAFVAVFVCFSTKATHLELVTDLSSAKFLQAFRRFVSRRGLCQHVYSDNGR
FT                 NFVGASNELRALLSSDSFKGDLLQECTSQGVQWHFNPPRASHFGGLWEAAI
FT                 HSAQKHFIRVLGKTTLHADDMETLLCQIEACLNSRPLIAMSDDPSDFEPLT
FT                 PGHFLIGSCLKSAPDADYDDIPMNRLKRWHLTQQIYQQLWKRWTAEYLSTL
FT                 QPRSKWFKQPVTIKEGQLVMLRDQATKPMEWPLARIVKTHPGADGIVRVVT
FT                 LQTKTGQYIRPVSKISILPVPVMESEQ"
XX
SQ   Sequence 5291 BP; 1594 A; 1240 C; 1095 G; 1362 T; 0 other;
     ttttggtcct tcgacaccag atctgtaatc atggcagagc aacgcagagt gaaaatgcta        60
     agcaagcaac gcataagcat cgaacaatcc gtcgacgcta ttcattcttt tgtcatacac       120
     ttccaggacg attccagcag caacgaaata acagttcgtt tagatacact tgagaagctg       180
     tgggagaaat tccttaaagt gcaggacgac ttggaaattt tggatgaaga cctgtttgaa       240
     gatcatctga agaagcgtac ggagatggaa accaaatatt acaaggcgaa gggtttctta       300
     gaaatgaagg ttaaagaaac atcgaaggaa gcctcgaaag ataacctagc accgtgtcac       360
     ttaacagaaa tgatggctcg agtgaaactg cctgatctaa aacttcctgt gttcgatgga       420
     aagcagttaa attggcttag atttcatgat ctatttcagt ccatgatcca tacgtcaaca       480
     acactctctg atacacagaa gttttattat ctgcgatctt cgttaagcga aactgccctg       540
     caattaattc agagcgtgcc tatcacaggc aataactaca acactgcttg gaatatcctc       600
     ctcgaccatt acaacaatgc ggaccaattg aagcaaagtt atgtagaggc actgttcaaa       660
     ccgttcgtac tcaaacgaga atcagcgtct gacctccgca agctcgtgga tagcttcgag       720
     gcaaatgtaa aggttctgaa gcaattggga gagcccactg agcattggga cacgttgctt       780
     atccatctac tttctcagca attggaccct acttcactac gtgattggaa agaagctgca       840
     tcatcgatcc ctaacatgaa gtatgcagat cttatcaaat tcatacaacg aagaatcaca       900
     gtgcttgatt ctctcacgcc acatggcaac aatgaagctc caaagcgagc tacacaacga       960
     gctgtcaaca taatggcggc aaccaacgaa acgagaggat gtgctttttg ctctgaaaac      1020
     catccaatac acacgtgcag caaattcttg aaatgttcct ggtctgataa ggaaaacata      1080
     attcgtgaaa aatcactttg ccgtaactgt ttacggactg gccatcgatc ccaaagctgc      1140
     agatcatcga gtaactgtcg tagctgcggt aaacgtcacc acaccacact gtgcctcaaa      1200
     tcacaaccga atctatcgag agggcagtct acaatgatac cacagctaaa ccaacgtaat      1260
     gaaatcgatc cttcaagtaa tgaagaacac acatccattc aatcgatcac ctgtacatct      1320
     ttgggacaaa gccaacgaac agtattgctg gcaactgctt cgatcatcct gattgacgag      1380
     aaaggtatgc aacacacagc acgagctctg ctcgattctg gaagtggaac ctgccttatt      1440
     acaaaccgat tagcccaacg catgtactgt cgtcgagaac cgatttcgat acgcattact      1500
     ggcgttggca ccacaacaac ctttgcgaag cagaaactac aagccacatt acgttctcga      1560
     ttgaacaact attcagcaaa catagagatg attatattgc ctacgctcac cggcaacctt      1620
     ccttcgacgt cggtaaatgt aatgtcattg aatattccat ccaacattca gctggctgat      1680
     cctgcattcg accgtccgga tcaaattgat gtaatcatcg gtgccgaaat cttcttcgac      1740
     gtgcttcagt tccagcacac catacgactt gggaataatc ttccaatatt gacaaattca      1800
     cagctgggat ggatcatttc tggaccaaca cctgctgaat caatgcagta ttcccattcc      1860
     atcgtcgtta atcattgcaa aacaacaata gacgatattc aatcccaaat ggaaacattt      1920
     tggaaggtag aagaggatcc ggctgctagt gttttatcaa tcgaagaaag gaaatgcgaa      1980
     gatcactaca ccagtaatgt ttcgcgaagc tctactggcc ggtacgtggt gcgtcttcca      2040
     gtgaacaaag agaaactcag tagagttgtc gataatcgaa atatggcaat tcgtcgattg      2100
     tcatatctgc ttgctcgttt taaacgtgaa cctgaactgc aacagcagta cgcatctttt      2160
     atagaggaat atgtccaact agggcacatg aaacgcattc atgaatcaga atacaacaac      2220
     acatctgttc aacactatta tctgccgcat catgcagtta tgcgttcaga ctcaacaacg      2280
     accaaacttc gagttgtatt cgatgcctct agcaaaactt caagcggcgt atccttgaat      2340
     gacgcgcttt tggtaggccc tacagttcaa gaagatataa gatcgatcat catacgagca      2400
     agaatgcata aggtaatggt agtggcagat atcaaaatga tgtatcgaca agtgcttgtt      2460
     gattcaagag acacaccttt gcaactaatc gtgtggaaac ctaatccaga tcaaccttta      2520
     gaaacttacg aattgaagac cgtcacatat ggaacagcta gtgctccttt tcttgccact      2580
     agaacattaa ttcaacttgc caacgatgaa ggaacatcct atcctctagc agctaccatt      2640
     cttaagagag acttctacgt ggatgacctt ttctctggtg gggcaaatgc ttcggaagta      2700
     tctgaattgg ttcgtcaact tattgcgctg ctgggaaaag gaggtctgca gttgagaaaa      2760
     tgggcttcca acaacgaaac tgttttacag caagtaccaa cggaacatcg tgctatagac      2820
     acttcgatag agttcagcag tgatcatgtc atcaaaactt tgggtttaca ttgggaacct      2880
     aaatctgata ctttgcggta caacatcgat ctccagctag gtttaccaaa tgaacaactc      2940
     accagaagaa cattgctttc attaatcgct cgcatttatg atccactagg tttagtagga      3000
     ccagtcataa caacggccaa aatattcatg caaaagttgt ggacacttcg taatgtcgat      3060
     ggcacggcag tcaactggga tcaagaactc cctgcagaca tccaacaact ttggaattct      3120
     tttgcgatgt cgttaccgaa gataaacgag ttgcggattt cgcgatgtgt aatcacaaca      3180
     aacccaacat cgattcaact tcatatcttt gcagatgcgt cgcaggtcgc ttatggaaca      3240
     tgcgcttaca tacgatcgat agattcacac ggaacaatca aggtagctct tctagcttca      3300
     aagtcgcgag ttgcaccact caaaacacta agtatcccaa gacttgagct gtgtggagcc      3360
     gtgttggctg ctgaattgta cgtcaaactg cgagcatcta ttcatctacc gatggaatgc      3420
     tacttctggc ttgatagcac tgtcgcatta cattggttga aagcaccacc gcaaaaatgg      3480
     aatgtgttcg tcggcaacag agtttctaaa attcagaatg ctactcagga aaccatgtgg      3540
     aatcacgtag ccggcatcga aaatcctgca gattgtatct cccgagggtt atcagcaacc      3600
     gaacttctag aatatgattt atggtggaat ggacctgcgt ggttaacatc atgccagaca      3660
     gattggccag tatcaagctc cttgtcagaa ggacttaacg aagcaatggc agagatccgt      3720
     tcatcatctg atcacactac aattctttgt tgctcatcta aggaaccaac gttcattgat      3780
     caactaattt caaaattctc gagatattca cgtcttttac gagtgattgc atactgtctt      3840
     cgaatgaact gtaaactgag aaccacctca gaatataaac catttaacac aattgttcaa      3900
     tcccacgaac tgaaggaagc tgaacatcga atactacgcg ccgttcaaca aaattctttt      3960
     gcgaaagaat tattacaact tcagagagac ggacacgtat cttcaagctc tagattgaaa      4020
     tggtttcatc cgtttatatc tcccgaaaag ctcatccgtg ttggaggcag actttcaaac      4080
     actcaacaac cttacgactg caagcatcag gttttattac cagcatctca tcctttggct      4140
     accctcatcg ttcgtgaata ccacgagaaa catcttcatg cagcaccgca gttgttattg      4200
     aatctactcc gacaacggta ttggatcatc ggggccagat ccctggccaa acgagtggta      4260
     cataactgta tcacatgcgc acgagctcgt cctaaactcg tggaacaact gatgtcagat      4320
     ctaccatcta cacgtacaac gccaagtcgt cccttttcca tagtcggtgt tgatttctgg      4380
     ggacctataa acctcgctcc aattcatcga cgtgcagctc ctggcagggc attcgttgct      4440
     gtttttgtat gcttcagcac aaaagcaact catctggaat tggtcaccga tcttagttct      4500
     gctaaattcc tgcaagcatt ccgtcgattc gtgtcgcggc gcggactgtg ccagcatgtt      4560
     tacagcgaca acgggcgtaa ttttgttgga gcctctaatg aattgcgagc attgttgtcc      4620
     agcgattctt ttaaaggaga cttgttgcag gaatgtacgt cgcaaggagt gcagtggcac      4680
     ttcaatcctc caagagcttc gcattttggt gggttgtggg aagcggcaat acattcagcg      4740
     cagaaacact tcattcgggt gctaggcaaa acgacactcc atgctgatga catggaaact      4800
     cttttgtgtc agatagaagc gtgcctaaat tctcggccac tcatagcaat gagcgacgac      4860
     cccagtgatt tcgaaccact gacgccagga cactttctca tcggttcttg cttgaaatcc      4920
     gcacctgatg cagattacga cgacatccca atgaatcgtc tcaaacgttg gcatttgacc      4980
     caacaaattt atcagcagtt gtggaaaagg tggacagctg agtatctttc aactttacaa      5040
     ccgcgttcga aatggtttaa gcaacctgtg acaatcaaag aaggtcaact agtaatgtta      5100
     cgtgaccaag ctactaaacc catggaatgg cctttagctc ggattgtaaa gactcatccc      5160
     ggtgctgatg gtattgtgag agtcgtaacg ctacaaacca aaactggaca atacatacgt      5220
     ccagtctcaa agatcagcat cctaccagtg ccagttatgg agtcagaaca gtagttctga      5280
     cggggccagt g                                                           5291
//
ID   BEL-12_AnFu-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 716-716 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 78 A; 48 C; 55 G; 36 T; 0 other;
     tgttcgtgca atccacgaat gtgtcagcca ggcgattccc cgtgtgttgc tactctacct        60
     ttcaaccgga gaagagtgac agcagcacac gggaagaaga gtgacagcag cgcacgggaa       120
     aaaagaggaa gtagtgaaaa ccgcgtggaa cgagaagcag gaaattccaa acctacaaaa       180
     ctgaaaaata aagaaattat ccactgagca ttcgaca                                217
//
ID   BEL-12_CQ-I repbase;    DNA;    INV; 8206 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-MAR-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_CQ_;
KW   BEL-12_CQ-LTR; BEL-12_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8206
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 177-177 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [7080-7661] - Integrase core
CC   'CTGCC' target site duplication
CC   LTRs are 97% similar to each other.
CC   The sequence 3067-4808 is an insertion of solo LTR (masked by x).
XX
FH   Key           Location/Qualifiers
FT   CDS           798..1901
FT                 /product="BEL-12_CQ-I_1p"
FT                 /translation="MDATLKATLQARRVSLLAALGRAESFQAEYDHERDQM
FT                 EVQLRLAHVEEASAKLEDIQQQLEDDETDEAGKAVHEGIRANFETRLFKIK
FT                 GFLLSKQRLIPQPRNPSPPQASSTLSGIKLPTITLPEFDGDYQKWLAFHDL
FT                 FVALIHNNPDLPDVQKFHYLRGVVVGKAAGYIDTYDINAANYQIAWDTLVE
FT                 RYNNEYLLKKRHLQALFELPPMEHETASSLHSLVDEFQRHIKILDQLKEPT
FT                 ASWSTVLEHLLCTRLHVDTINLWEDHASTLSNPDFQSLIEFLQRRMRVLES
FT                 ISVNNNHSSSNAATSSHQSPRTKKRSSQRLSSYASTASSGSTADCAACGLA
FT                 HPLYKCHKFGQLSVSERQRIVSSKQ"
FT   CDS           2010..3098
FT                 /product="BEL-12_CQ-I_2p"
FT                 /translation="MLITRQEPTAVQRHPHKRAVIWKCPLRSSQPSNCYNC
FT                 LGAHQVRNCSSKRSCRHCQQRHHSLLHAGHADNSPRTNSGAAAPTQASGHL
FT                 EVSASVVSAKQEVVTPTEVVPQVEVSVPLQQPKENVFLLTVLVKIVDSLGM
FT                 EHVARALLDSASQPNLITDRMAKILRLKRAPASVVIQGAGQMSTPVRHSVS
FT                 TEVRSRKNDFSCGINFLVMDKLTAELPSQNISTSGWNIPVELFLADPTFNE
FT                 RQPIDMVLGAKHFYSFFPGAARIHLDGSLPILVDSVFGWIVTGSASQAPST
FT                 PTETAHSYSVLAMMSLEESMERFWKTEELTINDKLSVEERDCESLFQSTTT
FT                 RTPEGRYVVLLIIGVHRVAK"
FT   CDS           5529..8087
FT                 /product="BEL-12_CQ-I_3p"
FT                 /translation="MRKWTSNRLEVLRGLTQDQIGTQSSLQFGPNEMVKAL
FT                 GIGWEPEADVLRFDSQINQSKGPPTKQFILSTIARLYDPLGHIAPVVVTAK
FT                 IIMQECWQLKCDWNDPVPDNIRIKWEKFFKELPEIRSYRIDRYALQPDSTY
FT                 QLHTFCDASKDAYGACCYIRCEDRHGNVRVTFLASKSRVAPLRGLNVPRLE
FT                 ANAAVLGVHLHFRVKQALKIKISDSYFWTDSAVVLQWIQANPNTWKTYVAN
FT                 RVAEIQFYTRGCHWNHVPTKDNPADLVSRGMTVPNFLNCETWKNATSWICS
FT                 NPRDWPRTNPPSVPADIMEARVVAAVTEKPPQVHPWFLRWHSYRRLVHSIG
FT                 FVLRFIDNTRQKARTTRTSDTPVPRALTVEQFAKAKTVLTRLAQQDSFSAE
FT                 LKELENGKPVSKQSNIYKMSPFIDAERVLRVGGRLKLSQLPFQAKHPALLP
FT                 GSHPFARILAEFYHQKLFHGGGRLLLTAMREEFWPIGGRILARSVVRNCFR
FT                 CVRLNPELVQQQIGQLPAQRIIPSRPFSVVGVDYAGPLYLKPIHKRAAPAK
FT                 AYICLFVCFATKAVHIELVGDLSTPAFLAALRRFIGRRGVPSHIHSDNGKN
FT                 FEGAKNELARLYTMLTHDAEQEKIHEFCTAEGITWHLTPPKAPHFGGLWES
FT                 AVKVAKKHLFRQLGPSRLSFEDMCTVLTQIESHMNSRPLLPLSEDPNDLAA
FT                 LTPAHFLIGTSMHALPDPDLRHIPVNRLDHYQHLQLHAQQFWAHWRREYLQ
FT                 ELLRDTKGYQRNDEIQPGRLVIVVDELQGPLRWPLARIEAVHPGPDGIVRV
FT                 VSLRTASGGIITRPAVKICLLPVPQSPEAPHTTPQPGQLPTDAVFPEEEKH
FT                 "
XX
SQ   Sequence 8206 BP; 1480 A; 1992 C; 1638 G; 1354 T; 1742 other;
     tatttggtgc cgtgaccagg atttctggcc aacctttccg tggagtgcac cgccattttg        60
     gacgccgagg atctgacgcg ggccgacgcc attgctgttg cggcttgctg cttgattata       120
     caaggcctaa tttaattagg cagcaggtaa ttagctgtcc taattccctg cgtctccccc       180
     gcgggtgccc tttagatctt cttccttctt ttcacgctgt tctgcaactt ccggactgac       240
     ggaatcggcg actgctgcct ctaccgttgg agcacatcgc acaggccttg ctagtgcctc       300
     tcaaaccttc gacgttcgct gccgaccggc tcgtggtgtt ccccaggcca tcctgcgcca       360
     ttttggaagc cacgcggtcg cgcccgcact cctggctcgc tgatcgacga ggatcatcga       420
     ccatcgtcat cggcggccat cttgtaacgc tgtatacgac cacgccacac ctgctggctc       480
     ttcgaaaccg gttgtacgga cgattccctg cctccccggg atcctcaacc ggctgcaacc       540
     gcgtcacgcc cgatctgcga ccgcttcact gctgctgaac ggtgccacga gccgggtttt       600
     ggtgatcgcg cacagcacgg acaagctgct tgttcccatg gctgttttct tgaactttca       660
     aggcattttc ttgccttgga taggtgagta cctttccaag tcgctactcg tctgcgtccg       720
     ggtctaccgt ggtctttttt cgcagatctt gctcgccact tttgcgtcag ttgttgctgt       780
     cgggcggcat ttccaccatg gacgcgacgc tgaaggcgac gctgcaggct cgcagagtgt       840
     cgttgctggc ggcgctgggt cgggcagaga gctttcaagc ggagtacgac cacgaacggg       900
     accagatgga ggtgcagctg aggctggccc acgtcgagga agcgagcgcc aagctcgagg       960
     acattcagca gcagttggag gacgacgaaa ccgatgaagc gggtaaggct gtacacgagg      1020
     gaatacgggc taattttgaa acgcgcctgt tcaaaataaa aggcttcctt ctgtccaaac      1080
     aacgtcttat tcctcaacca cgcaatccct cccccccgca agcatcctcc actctctctg      1140
     gcattaagct tccgacgatt acgcttcctg aatttgacgg ggattatcag aaatggttgg      1200
     cttttcacga tctgtttgtg gcgctcatcc acaacaatcc cgaccttccc gacgtccaga      1260
     agtttcatta tttgagggga gttgtcgttg ggaaggcagc cggctacatc gacacgtacg      1320
     acatcaatgc ggccaactac caaatcgctt gggacactct tgtggagcgc tacaacaacg      1380
     agtacctgct gaaaaaacgt catctacaag ccctcttcga actgccaccg atggaacacg      1440
     agaccgcatc cagcctccac tcgctggtcg acgagttcca gaggcacatc aagattctgg      1500
     accagctcaa agaaccaacc gcttcttgga gcaccgttct cgagcacttg ctgtgcacac      1560
     gattgcacgt cgacaccatc aatctctggg aggatcacgc ttcgacgctc tccaatccgg      1620
     acttccagag cctgatcgag ttcttgcagc gccgaatgag ggttctggaa tctatttcgg      1680
     taaacaacaa tcattcttcg tccaatgcgg ctactagctc gcatcagtcg ccccgcacga      1740
     agaaacggag ctcgcagcgc ctttcgtcgt acgcctccac agctagttca ggatctaccg      1800
     cggactgtgc agcgtgtgga ctcgcacatc ccctctacaa gtgccacaag ttcggtcagc      1860
     tttctgtctc ggagcgtcag cgaattgtga gcagcaaaca gtgaccgctt gctacaactg      1920
     cttgggggca caccaagtga ggaattgttc gtccaagcgc tcctgcaggc actgtcaaca      1980
     gcggcatcat tcgctccttc acgcgggaca tgctgataac tcgccaagaa ccaacagcgg      2040
     tgcagcggca cccacacaag cgagcggtca tttggaagtg tccgcttcgg tcgtctcagc      2100
     caagcaactg ctacaactgc ttgggggcac accaagtgag gaattgttcg tccaagcgct      2160
     cctgcaggca ctgtcaacag cggcatcatt cgctccttca cgcgggacat gctgataact      2220
     cgccaagaac caacagcggt gcagcggcac ccacacaagc gagcggtcat ttggaagtgt      2280
     ccgcttcggt cgtctcagcc aagcaagagg tcgttacgcc caccgaggtc gttccccagg      2340
     tcgaagtcag cgttccactt cagcagccca aggagaacgt gttcctgctt actgtattgg      2400
     tcaagatcgt cgattcgctg ggaatggaac acgtggcccg cgcactactg gacagcgcct      2460
     cccagcccaa tctcatcacc gatcgcatgg cgaaaattct gcgcctcaag cgagcccctg      2520
     cgagcgtggt gatccaaggc gcaggccaga tgtcgacacc tgttcggcat tccgtctcca      2580
     ccgaagtgcg gtcaagaaag aacgatttct cctgcggtat caactttctg gtcatggaca      2640
     aactgacagc ggaactacca agccagaaca tctcgacatc gggttggaac attccagtgg      2700
     aactcttcct cgctgatccc actttcaacg aacggcaacc gatcgacatg gttctcggag      2760
     caaagcattt ttattctttc ttccctggcg cagctcgtat ccacctcgat ggttcacttc      2820
     cgattcttgt agacagcgtc ttcggctgga ttgtcaccgg ttccgccagc caagccccgt      2880
     ccacaccaac cgaaaccgca cactcgtact cagtactcgc gatgatgtca ctagaggaaa      2940
     gcatggagcg attttggaaa acggaggaac tcacaatcaa cgacaagctt tccgtcgagg      3000
     agcgagactg cgagtccttg ttccagtcga cgacaacgcg tacgccggag ggtcgctacg      3060
     tggtacxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3120
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3180
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3240
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3300
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3360
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3420
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3480
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3540
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3600
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3660
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3720
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3780
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3840
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3900
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3960
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4020
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4080
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4140
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4200
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4260
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4320
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4380
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4440
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4500
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4560
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4620
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4680
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4740
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4800
     xxxxxxxxgt acgttacccc cgcaaaccag gtttcgaaaa cttgctgggt gactccaaga      4860
     ccgcagcacg acgaccaagg ttccgactgc ttgagcgacg gctcgagcga gacgcacagc      4920
     tcaaggagga ctaccacaag ttcatgcggg agtatgtcga gctgggccat atgcagctgg      4980
     ctgaacctga tgagaaggac aagacgccat cttgctacct accccaccac cccgtcttta      5040
     aggactccag cacgacgacc aaggttcggg ttgtcttcga cggttcagca gcgacttcta      5100
     cgggattgtc gctcaaccaa gcactctgcg tcggacctgt agttcaagag gaccttctct      5160
     cgctcctgct ccgtttccgg aactaccctg tagccctcgt agcggacgca gccaaaatgt      5220
     accggcaggt tctcgtccac ccagaggaca gaaggctgca gcgcatcttc tgacggttct      5280
     cgccagactc acccatccaa acgtacgaat tacagaccgt cacgtacggc ctagcacctt      5340
     ccgcgtacct agccacccgt tcccttcagc aactcgctca ggacgagggt cacgagtacc      5400
     cgttgggcgg cccagcgctc gaaagcaact tctacgtaga tgacttcatt ggtggcgctg      5460
     acacggtcga ggacgccata cgcttgcgga aggagcttac ggaactgctg gccaagggag      5520
     gcttcgagat gcggaagtgg acatcaaacc gtctcgaggt actgcgagga ctgacccaag      5580
     accaaatcgg cacgcagtcg agtctgcagt ttggtccgaa cgagatggta aaggcactgg      5640
     ggattggatg ggagcccgag gccgacgttc tgcgattcga ctcgcaaatc aaccagagca      5700
     agggacctcc cacgaagcag ttcatcctct caacaatcgc tcgactctac gatcctctag      5760
     gtcacatcgc acccgtagtt gtcaccgcca agatcatcat gcaggaatgc tggcagctga      5820
     agtgtgactg gaacgacccg gtgccggaca acattcggat caagtgggag aaattcttca      5880
     aggaacttcc agaaatccgg tcctaccgga tcgaccgcta cgcactccag cctgactcca      5940
     cttaccaact gcacacattc tgcgacgcgt ctaaggacgc ctacggagct tgttgctaca      6000
     tccgctgtga agaccgacac ggcaatgtac gagtcacgtt cttagcatca aaatctcggg      6060
     tcgccccgct cagaggactg aacgtccctc gcttggaagc aaacgctgct gtgctcggag      6120
     tccaccttca cttccgggtc aagcaggcac tcaagatcaa gatctcggac tcgtacttct      6180
     ggacggactc agctgtcgta ctgcagtgga tccaagcaaa cccgaacacc tggaagacgt      6240
     acgtagcaaa ccgtgtcgct gagatccagt tctacacgcg cggctgccat tggaatcacg      6300
     tgccgaccaa ggacaatccg gcggacctgg tgtcccgcgg gatgacggtg ccgaacttct      6360
     tgaactgcga gacctggaag aatgcaacaa gttggatatg ctcaaaccca cgagactggc      6420
     cgaggaccaa cccaccaagc gttccggcgg acatcatgga agctcgcgta gtcgccgccg      6480
     tgacagagaa gccgccgcaa gttcacccct ggttcctgcg ctggcactcg tacagacggc      6540
     tggtccactc gatcggattc gtcctccgat tcatcgacaa caccaggcag aaagcgagaa      6600
     cgaccagaac gagcgacaca cctgtgccgc gtgccctcac tgtggagcag tttgccaaag      6660
     ccaaaacggt gctaactcga ctagcacagc aggactcctt cagcgccgaa ctgaaggaac      6720
     tcgaaaacgg gaagccagtg tcaaaacagt ccaacatcta caaaatgagc ccattcatcg      6780
     atgcagagag agtgttgaga gtggggggtc gactaaagct ttcccaactg cccttccaag      6840
     ccaaacaccc agccttactc cctggttccc atcctttcgc tcgcatcctc gccgaattct      6900
     accaccaaaa acttttccac ggcggcgggc gcctactact gaccgccatg cgcgaggaat      6960
     tctggcccat cggtggtcgc attcttgcca gaagcgtggt gcgcaattgc ttccgttgcg      7020
     ttagactgaa tcccgaactg gttcagcagc agatcggcca acttccggct caacggatca      7080
     tccctagtcg cccatttagc gtcgtcggcg tggactacgc aggtccactg tacctgaagc      7140
     cgatacacaa acgtgctgca ccggccaagg cctacatttg cctctttgtg tgcttcgcga      7200
     cgaaggccgt tcacattgaa cttgttggag atctctccac ccccgcattc cttgccgcgc      7260
     tgcgcaggtt catcgggcga cgcggagtgc catctcacat tcactccgac aatggcaaga      7320
     actttgaagg cgccaagaac gaacttgccc ggctgtacac aatgctcacc cacgacgccg      7380
     aacaggagaa aatccacgaa ttctgcacag ccgaagggat cacctggcat ctcactcccc      7440
     caaaagcgcc ccacttcgga ggattatggg aatctgccgt aaaggtcgcc aagaagcacc      7500
     tgttccggca gcttggtccg tcaagattgt cgttcgagga catgtgcacc gtgctcacac      7560
     aaatcgaatc ccacatgaac tcccgaccac ttcttccact gagtgaagac ccgaacgacc      7620
     tcgccgctct aacgccggcc catttcctaa tcggaacatc gatgcacgcc ctgcccgacc      7680
     cagatctgcg ccacattcca gtcaaccgcc tagaccacta tcagcatctc cagctccacg      7740
     cccaacaatt ttgggcccac tggcgacgcg aatacctcca ggagctgctg agggacacca      7800
     agggttacca gcggaacgac gaaatccaac ccggtagact cgtgatcgtc gtcgacgaac      7860
     tgcaaggacc actccgctgg ccacttgccc ggatcgaagc cgttcatcct ggaccagacg      7920
     gcatcgtacg agttgtgtcg ctgcgaacgg ccagcggtgg aatcatcacc agaccagctg      7980
     ttaaaatctg cttgcttccc gtgccgcagt ctcctgaggc tccacacacc acaccgcaac      8040
     cgggtcagct gcctacagat gcagtgtttc ctgaagaaga aaaacattaa acttagttaa      8100
     tttatttagc acacgaagtg catcggctca acttccccta tagttagaat cttattttgc      8160
     tttatttaca tttttttttg aattagtcat tcaaggcggc gggcga                     8206
//
ID   BEL-12_CQ-LTR repbase;    DNA;    INV; 504 BP.
XX
AC   AAWU01032924;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_CQ_;
KW   BEL-12_CQ-I; BEL-12_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-504
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 178-178 (2011).
XX
DR   Genome; AAWU01032924; Positions   36102   35599.
XX
SQ   Sequence 504 BP; 93 A; 154 C; 106 G; 151 T; 0 other;
     tgttgcgtca gccagtcttt cttaaaaagt tctttatatt ttgcagttag caccgtcgac        60
     agctggtgct gaccggcatt attatttttc gccccacaat tctggcaccg ctgcgctgtc       120
     agaggcaagc cacccaaatg tgtctcgtca ctctcgtcgt cattccaaat ccaacctctt       180
     ttgaagacag aagtgctgaa aataaaaagg aagattaaaa ttagtttgtt tcgctaaata       240
     aagtgcgttg ttacttacct tcgcgtgttc tacttacctg ctgttgccac tgctctgctc       300
     ctgctgccgc tgctctgctc ctgctgcacc tgctgctcct gttgcacctg ctgctgcctg       360
     tacctgctgc tgcgcttgca cctgctgctg ctcttgcacc tgctgctgct cctgctggac       420
     cacctgcttc cgccgccgtt gctctaatct gatcctcccg cacaaaacac aacgtagggt       480
     cccggttggt gagttgccac tcca                                              504
//
ID   BEL-12_DAn-I repbase;    DNA;    INV; 2054 BP.
XX
AC   AAPP01015960;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   06-MAR-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DAn_;
KW   BEL-12_DAn-LTR; BEL-12_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2054
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAPP01015960; Positions    2534     481.
XX
CC   'GTAGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..2032
FT                 /product="BEL-12_DAn-I_1p"
FT                 /translation="MESGAETIGAAAANRERMLRRRAEVTCQEMEALHHKV
FT                 KAAARTEDCTIMALESVEKRLRERFTALQEELEELNFSEIGSDLYWRFSQL
FT                 ATDVEVEIQVEVAKRSMRIAVHSTLLDGASVSPMPYKPAPSLPPLPMPTFS
FT                 GGYADWPDFCALFRTTIDSHPHLTKMEKLRWLISCLRDSALETVRALEITD
FT                 ANYDVALDLLRNRFSNRRLIFQAHINEILQLRVVEPGSVATLRELSDRFNG
FT                 HMRALMSSGTSAEIQGCLLIQILFQKLDPATKAKWEDSLAGSTDDSLPAWE
FT                 SMARFLEQRCRTLESVDFSLAYSPVNQVGRGRSSNNRSSCMVINASPVLCA
FT                 LCGVSAHELPACPKFSALPIEERYDEVRRLARCFVCLEDGHLARGCSASRC
FT                 STCNHRHHILLHPRGQVSPARVPRPIGAVAGANPSRSINPVMNQDRNAELV
FT                 LLPTANVLVRGRSGDFLPCRALLDSGSQVHLISSRLANELQLGRSKCSTTV
FT                 AGFGGAGFETDGASVNVCLKSRLSTYSVEIEAVVASHITDYQPSQDIDASG
FT                 WKIPGNMDLADPNFHKTQRVDLLIGAGLFFDLLSAGQIQLGHGLPIAQNTR
FT                 FGWVFSGHGGLSRDVSALCGREDNPWNNLCNNVTAAPSDIVIEG"
XX
SQ   Sequence 2054 BP; 449 A; 535 C; 564 G; 506 T; 0 other;
     tttggtgacc ccgacgtgat ctcatcccgg ttgattattg tgatcaacat taaaagtgcc        60
     aagaaaacgc ccttgttgtt gttacaagtt gcattttaat caaataatgg agtctggagc       120
     tgagactatt ggagctgctg ccgcgaaccg ggaaaggatg ctgcggagaa gagcagaggt       180
     cacctgccag gagatggagg cgctgcatca taaagtgaag gctgcggcgc ggactgagga       240
     ttgtactatt atggcgctgg agtcagtgga gaagcgtttg cgtgagcggt tcaccgcgct       300
     tcaagaagaa ttggaggagc ttaattttag cgagatcggg agtgatttgt attggagatt       360
     ctcgcagctg gcgactgatg tggaagtgga aattcaggtg gaggttgcca agcgctccat       420
     gagaatcgct gtccactcca cacttctcga cggtgccagt gtatcgccaa tgccatacaa       480
     accagccccc tccttgccac cgttgccgat gccaacattc agcggcggct atgccgattg       540
     gccggatttc tgcgccctat ttaggacaac catcgacagt cacccgcact tgaccaagat       600
     ggagaagctc aggtggctca tttcctgcct gcgggactca gccctggaga ctgtgagggc       660
     gctagagatt accgacgcta actatgatgt tgcccttgac cttttgcgca accgtttcag       720
     caaccgtcgg ttaatcttcc aggctcacat caacgagatc ctgcagctaa gggtggttga       780
     gccgggatcc gttgctactc ttcgggagtt atccgaccga ttcaatggac atatgcgggc       840
     cctcatgagt tccgggacgt cggccgaaat tcaagggtgc ctcctcatcc agatcctctt       900
     ccaaaagctg gaccccgcta caaaggccaa atgggaagac tctctggcag gaagcactga       960
     tgacagcctt ccagcttggg agtctatggc acgattctta gagcaaaggt gccggactct      1020
     cgaaagcgtt gacttttctt tggcgtattc accagttaac caagtaggcc gaggtagatc      1080
     gtccaataac cgatcctcgt gcatggttat taacgccagt cctgttctat gcgccctgtg      1140
     tggtgtttcg gcgcacgagc ttccagcttg tccaaagttc agtgctttgc caattgagga      1200
     acgatacgac gaagtgcggc gtctggctcg ctgttttgtt tgtctggagg atggccatct      1260
     cgctcgcgga tgctcagctt cccgctgctc gacgtgcaat caccgtcatc atattctgtt      1320
     gcaccctcgc gggcaggttt cacccgcacg agttccacgt cccatcggtg cagttgctgg      1380
     tgcgaaccca tcccgctcaa tcaaccctgt tatgaaccag gatcgcaatg ctgagctagt      1440
     gctcctgcca acagcaaatg tactcgttcg tggtcgatct ggagacttcc tgccttgccg      1500
     agcgttactg gattccggtt cacaagtaca tctcatctcg tcgcggctgg cgaatgaact      1560
     tcagcttggc cgctccaaat gctccacaac ggtggccggt ttcggcggcg ctggatttga      1620
     aacagatgga gcatcggtta atgtgtgctt gaagtcccgc cttagcacat attcagtgga      1680
     aattgaggct gttgtggctt cacatataac ggactatcag cccagccagg acatagatgc      1740
     ttcgggctgg aagattcctg gtaatatgga cctagctgac cccaacttcc acaaaacgca      1800
     gcgagtggac ctgctgattg gagccggctt attctttgac ctgttgtcgg ctggccaaat      1860
     ccagttaggt cacgggctcc caattgctca gaacactcga tttggctggg tgttttctgg      1920
     ccacggtgga ctatcacggg atgtgtcggc gctctgtggt agggaggaca acccatggaa      1980
     caacctctgc aataatgtga ctgctgcccc ttccgacatt gttattgaag gctaaccctt      2040
     caatgggggg agga                                                        2054
//
ID   BEL-12_DAn-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   AAPP01015960;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DAn_;
KW   BEL-12_DAn-LTR; BEL-12_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-318
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAPP01015960; Positions     480     163.
XX
SQ   Sequence 318 BP; 81 A; 52 C; 69 G; 116 T; 0 other;
     tgttgggcca agcagccacc aaagaattca tctaaaataa ttataatatg ctaagctgca        60
     gctgttgtta tcagcatgtt tcgtctctgt tttgtcccca gtttcgcatg cgttttattg       120
     gcatttgtag cgtatgcgct ttggggagct ttagttgagc ttctgcgcaa gctcttgttt       180
     tggcgtttgt tgtgatttgg agtttattgg agccgcttgt attagggtta aattgagccc       240
     aaaataaata tattgaaact ataatttgaa acgcgtatag ttattcggtt gctattaaaa       300
     actattaata gctcaaca                                                     318
//
ID   BEL-12_DAzt-I repbase;    DNA;    INV; 3970 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-12_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-3970
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 775-775 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1055..3967
FT                 /product="BEL-12_DAzt-I_1p"
FT                 /note="DUF1759, and retropepsin."
FT                 /translation="MPTGDEDSKKLLPVPAPGTRRPRSVSAPGTPTSVTKP
FT                 IKLPATPKPSSSSAAKSKSVLFPSPVTLKVPVLPPTSPISSRRASPMSHTA
FT                 FSAARAKLVAAIGRLTSLKDRFTASGTSTPSSAVAQVRRDRLQSMWAKVDA
FT                 EFEACSVASADENSDTQLEIQAMYDTCYDDFERCLDDLTVPSASPVVRPSS
FT                 QPDSHGGCRLPPCDIEVFSGDYVRWPTFRDLFTAIYIQNPRLSPVEKLYYL
FT                 ATKTSGDPKAIVEKSPLTNDGFEAAWDALRDRYENRRLLVTNQIHLLLSLS
FT                 HIGSDSSRALKELQSTIQGVLTALAHSKVSTENWDSLLVTICASKLPRLTR
FT                 ALWEESITNKKEMPSWKEMDSFLSQRYLTLEAIEGHPSNPHSSKGDPNPPP
FT                 TKNNPFRSQGSPVPRRVYSFETKVNPQRRTCDLCATEHHPIRDCPRFLHMT
FT                 VDARSSYIKQKQLCLNCFARGHQIRECQSAHNCVTCGERHHTLLHRGNPSS
FT                 SEPTSTSIQHPSSSESLSNVQAYFASGTSAVLLSTAMINICHLGTNFRARA
FT                 LIDSGSEATFITERLVSMIKLPFQPIQAQVSGINHTVSAQSKKLCNFSIRS
FT                 PTKSGLQLNVTAYVIPEVAANIPSHPISQILLRDLPSLPWADPTFFESSPI
FT                 DVLXGADLLPSVLLSGLQTNICGSLLGQETVFGWVLSGPVSNTAVQRAPQV
FT                 ASFSSQVSRVPIQGVGDAGSRVYKSNPLPAFSAELLGRSPTVDRRDDNHCR
FT                 GDQNSVLSSSPNLNLDHCHHVTISNAQGGPLSRYNFSTNASSTPSSHPRFP
FT                 PPALGPRSRADRIIESRRACGLNSYRCRLCPGVHPLRTCHHFLRLSPMKRL
FT                 RAVLINKYCANCLAHQHSGGDCRSGGLCRECGKNHHTLLHIPASRRATCSA
FT                 SASSSPSPASRAERRPPRPASQPFGGIAAASPLASASQHPGTPPPTGDSRL
FT                 SYRTVNYPLQSCKGGG"
XX
SQ   Sequence 3970 BP; 929 A; 1188 C; 870 G; 982 T; 1 other;
     ttggtccttc gagccggatc ttcaccaaca aggagaagcg caccccagca agcttaggcg        60
     gatcgctcta ccaagataag tacatatgac ccatccaaca ccagcataag tgccgtgatc       120
     ttgttttttt tttcgtccaa gtccaagcgg ctattctgtc cgttctccga tcttccgctc       180
     ctcctaacta cgtacatcag tacacatcag atttaactgc atattcttcc agctgcatat       240
     atatatatcc taatacgccc ttaagcgcgc ctacatccat tttacatata tttaattgca       300
     tattcttgct cgcatattcg tatatctatc tacctctact caactgcatg ttattgcccg       360
     cctttatcca tacccgcata catagctaca catatattgg ctgcatattc ttgcgtcgat       420
     atatatgtat atatatatat atatatatat atatatatat atatgtatat gtactaatcc       480
     gcaattaaac gcaccgcaca tacatacata tatcccaacc gcatatcctt gcgcatcata       540
     tatatatata tccgaaatat atatacataa aactgcatat tcttgcaaaa atacatccac       600
     acctccccgc acctacatcc atacatacaa gcagcaatag cggtgcccgc ttttgctcgt       660
     ttttgcgttc gcctctccac cgttgcgcgc gttgttttcg ttgggagaga agattatcgg       720
     tgccgctctt gcgcataacg gagcgccaag tgacgcgcta ccctgtattt tgagggtgta       780
     ctgttttcag tggtggcttg cccagtgacg cgctacccta ctttcggcgg gtatattgtt       840
     tttgggtgtc acttgccacc gactcccaat attactgccc gattcgacat aatataccga       900
     agcgcctccg acttgccgat acatctaata aatccaaatc caaacaaaat ccaagtgcca       960
     tcaaaacaaa ggggtttgct ggatccgttc tccgtgtcta tccgcccgac gctttcgctt      1020
     ccgtttcgtt gttctcagcg ggtgaggtca gaacatgccc actggtgacg aggacagcaa      1080
     aaaacttttg ccagtgcccg ctccaggtac taggagacca cgcagtgttt ccgccccagg      1140
     aacacctacc tcggtgacta aaccgataaa gttacccgct acgcctaagc cgagttcgag      1200
     ttccgcggca aagagcaaat cggtcctgtt cccttcacca gtcacgctaa aggtgccagt      1260
     tcttccacct accagcccca tcagctctcg acgcgcttcc ccaatgtctc acacagcatt      1320
     cagcgccgca cgtgcgaaat tggtagcagc catcggcagg ctgaccagtt taaaagatcg      1380
     gtttaccgct tccggtacca gcacgccatc ctccgctgtc gctcaggtcc gtagagaccg      1440
     gttacagagc atgtgggcaa aggtggatgc ggaattcgag gcctgttccg tagcatcggc      1500
     tgacgagaat tctgacaccc aactcgaaat ccaagccatg tacgacacat gttacgacga      1560
     ctttgaacgg tgcctagacg accttacggt cccatcggcc agcccagtag tccgtccttc      1620
     ttcccagccg gactcccacg gcggctgtcg actgccaccc tgtgacatag aagttttctc      1680
     tggggattac gtccgttggc ctaccttccg ggatctgttt accgcgatct acatccaaaa      1740
     tcccaggctg tctccggtgg agaagctgta ctacctcgcc actaagacca gtggcgatcc      1800
     aaaggccatc gttgagaaat ccccgctgac caacgacggc tttgaggcgg catgggatgc      1860
     ccttcgtgat cgatatgaga accgacggct tctggtgacc aaccagattc accttctcct      1920
     ctctttgtct cacatcggat ccgattcgag tcgtgctctg aaagagctcc aaagtacgat      1980
     ccagggggtt ctaaccgcac tcgcccactc caaggtctcc actgaaaatt gggatagctt      2040
     gctcgtgacc atttgcgctt caaagttgcc gagattaacc cgcgccttgt gggaagagtc      2100
     cataaccaac aaaaaggaaa tgccgtcatg gaaggagatg gactccttcc tcagtcagcg      2160
     gtatctgacg ctagaggcga tcgagggcca cccttccaat ccacatagtt cgaaaggcga      2220
     tccgaatccg ccacctacta aaaataaccc attccggtcc caagggagtc ctgttcctag      2280
     gagggtttac tcgtttgaga caaaagtgaa tccgcagagg aggacatgtg atctctgcgc      2340
     cacagagcat catccaatcc gtgattgtcc tcgcttcctc cacatgaccg ttgatgctcg      2400
     ttccagctac attaaacaga aacagctatg cctgaactgc ttcgcacgag gacatcagat      2460
     ccgagaatgc caaagcgccc acaactgcgt cacttgtggg gaacggcacc acacgttgct      2520
     gcaccgtggc aacccaagtt ccagcgagcc gacttccaca tccatacaac atccgagttc      2580
     ttccgaatcc ttgtctaacg ttcaggctta tttcgcttcc ggaacaagtg cggttctttt      2640
     gagcacggcc atgattaata tttgccatct ggggaccaat tttcgcgctc gcgctttgat      2700
     cgactctggc tccgaggcca cgttcattac ggaacgtcta gtcagcatga tcaaactgcc      2760
     attccaaccc atccaggcac aggtctccgg catcaatcat actgtatccg ctcagtcgaa      2820
     gaagctctgc aatttttcca tccgctctcc gactaagtcg ggtttacaac taaacgttac      2880
     agcttacgtt attccggagg tagcagcgaa tattccctcg catccgatct ctcaaatttt      2940
     gctgagagac ttgcctagcc ttccgtgggc ggatcctaca ttttttgaaa gctcaccaat      3000
     cgatgtcctg wttggagctg accttctacc atccgtactg ttaagcggct tacagacgaa      3060
     catatgtggc tctctcctcg ggcaagaaac agttttcggt tgggtgctct ctgggccagt      3120
     gtctaatacg gccgttcaga gagccccaca agttgcatcc ttttcgagtc aggtgtctag      3180
     agtacctatc caaggggtag gagacgcggg ctctcgagtc tacaaaagca atccccttcc      3240
     ggccttctcc gcagaattgc taggacggtc tcctacggtt gaccgacggg acgataatca      3300
     ctgtcggggc gatcagaact ccgtgctaag ttcaagcccg aacttgaact tagatcattg      3360
     tcaccacgtg acaatttcca atgcccaagg tgggccttta tcccgttaca actttagtac      3420
     taatgcttcg tcgacacctt catctcatcc tagatttccg cctccagcct tgggcccacg      3480
     ttcccgcgcc gaccgtatca ttgagagccg acgcgcttgc ggcctgaact cctaccggtg      3540
     ccgactctgc ccaggagtgc atccgctacg gacctgccac cacttcctcc ggttgagccc      3600
     tatgaagagg ctccgagccg tacttataaa taagtattgc gcaaactgcc tggctcatca      3660
     gcattccggc ggtgactgtc gcagtggtgg gctgtgcagg gagtgtggca agaatcacca      3720
     cacgctcctt cacatacccg cgtctcgtcg tgcaacctgc tcagcctcag catcttcgtc      3780
     gccatctcct gcgtcccgag ctgaacgccg cccaccgcgc cccgccagcc agcctttcgg      3840
     aggaattgca gcagcgtcgc ccttggcttc agcatcccag catccaggga caccaccgcc      3900
     aaccggagac tcccgtctat cctaccggac cgtcaattat cctttgcaat cctgcaaggg      3960
     ggggggagga                                                             3970
//
ID   BEL-12_DAzt-LTR repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-354
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 780-780 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 354 BP; 89 A; 105 C; 75 G; 85 T; 0 other;
     tgttgagagc agcagcaaac ttttcgcatc cactgtggag ggctctccgc gcccgactcg        60
     ctctcgcgcg ctcgtgcaca cggcactcag gaaagctgcc tcgaagcctg ggcggccact       120
     agcttgagcg ggcgttttag ttacgctctc acccccgtta cgatcggtca acgaaagttt       180
     ctcgcccatt acatacatat tctcgcccat tacatacgat ttctcgccca tacccctgag       240
     aatttgtgaa ctatacataa tatacattaa gaaataaacg aaagtgaaca aagtgaaacg       300
     tgcgagtttt catttaacgg ctgtgctacc tcgctgatcc gccccctaca aaca             354
//
ID   BEL-12_DBp-I repbase;    DNA;    INV; 6121 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6121
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 646-646 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ORFs are broken.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1081..2169
FT                 /product="BEL-12_DBp-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MNEIDDDDNNDIRTREWVDGAQRRLKFDNENISENEI
FT                 TNHYQIGTFMARQTIKQDLPSFSGDPLEWPIFYAEFENSTKTCNFTNYENL
FT                 SRLRKALVGRAKECVQSLLVLPDNVDSIIDILQERYGDPSYIIRLLLDKIK
FT                 QLPVVRDDKFEKLFAFYDIINNLIHTLLNVGDVDQLRNPLIFAEILDKLPV
FT                 PQRIAFIKHYQKLKPSEPKIIVFQSWLGETIKAATVLGFGQNLNKSKDCTL
FT                 TVSGIRNGTDKSKNKGFCNYCKLSDHYVTTCFKFKDLHIDKRWEHVSKNGL
FT                 CISCLGKNHLLKDCKRKRQCNINNCRYNHNSLLHKDNFENIKTNKSDDGDQ
FT                 SVSNNLEKNCNVNFSAAKFC"
FT   CDS           2329..3870
FT                 /product="BEL-12_DBp-I_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MKFMNKIISKVVSVRIKGIGMNTKTHMMRRVRTVSNL
FT                 NLPQQTLSIDHMTDNFKFLKNFTHCSYNQAQPRILIGQDNWSLIVSRKLKY
FT                 ESFSGPVASNTLLGWVVHGLTQPERLLAETNHTFHVNEYFPEKDDLDELHN
FT                 LVKSYWSIENEFATQKDFPMSVDDKRCMNIVNNTLKRVGNRFECGLFWKND
FT                 SIQLPESYKNAFSRLLSCEKKIDKIPEYGQKYNEVMQSYISKGYLKKLNPT
FT                 EAKYETKLTYYLPHFGVQNINKPEKLRIVFDAASKSHNYCLNDFLLPGPDL
FT                 YTQLSSVLMNFRKNKIAFVGDIKEMFLQIQVPEKDRQAQRILWRGNKRHDP
FT                 PDVYEIQVLFFGAKCSPSIAQQVRNHNANEFKEKYPKACKDILLNHYMDDY
FT                 LGGADDIDSAVQLIKDVSFVHKQGGFQMCNWISNSVEVLNQIDPLNCHNKA
FT                 QASPKMKTLTEERVLGLIWNYENDTFTYNLQFTKSHNEIVNTSRRPTKREV
FT                 LKITMSIFDPLGFCQTFL"
XX
SQ   Sequence 6121 BP; 2172 A; 1125 C; 1141 G; 1662 T; 21 other;
     ttggcgatta tctcagagtc gtttttttsc aaaagtggmc ttcgccgtga ccacgattca        60
     cacmgaaact atttgatcga tcttcttcaa ttttttktwa aattaktcgt aatgatwggc       120
     tgccgagttc gtgaacgatt cagttttttt tgmgtccatt tttgatttcg cwgataaaga       180
     atwtttttaa tawaatttwt aggaccgaag acatcaatcc tttggwgmga tgctcactkt       240
     atagcaggaa aaaccaaata ttcttgaaac taaccgttcg cgaactgggt ataatattak       300
     aatagtacaa aaaatcgagc gaagcgtcaa cagcggtatg gacaaaaatc caaagtcaaa       360
     aacctgcgtg ttattttcgg tcgttcgatc cggacactaa tatataacta caggtaaacc       420
     ccaacaatgg tccttcgatg tcaactgaac agcaaatgga tcgtgaaata gatttcgcta       480
     ttggcccaga ctacctacac actcacaaaa agacgactta agttgtgtgt gttagtaaat       540
     tcgmggaata actgcgcaaa aactgcgacg ccaaaaaaat aatttcacca cgatctctgt       600
     gacggtagaa taagacgcgg acagcattat ggcaccaaca ggatcaaaaa agaaattaca       660
     aggaaaaamc caacaaaagg ataaaagcac acaacaaaaa actgaagacg acagggttat       720
     cgacacaccc agacccgaac catcggagca agaagtaacc atcatggaaa atcgcaacaa       780
     aaaaatggtt gcgtctacac cggcgattct aggcacaccc aatccatcca gacagttctg       840
     tgaaggcccc gcaggtcaca tatctccgaa ggaagccaat cctcccgcag ctcaaccaag       900
     gttcaacgac ttcaggtaca gcttgagtac ttgaaaaagc agcagaaact tcgagatcag       960
     ctggcacgac aggaacagga gcgagctcgt cttgagttta aacaggaaca attggagctc      1020
     gagcaaaaat tacaactggc acaattggga tcagacgccg gtagcagaat tggagacaac      1080
     atgaacgaaa ttgatgacga cgacaacaat gatatccgta cgcgtgagtg ggttgatggt      1140
     gctcaacgta gacttaagtt tgataacgaa aatatttctg agaacgaaat tactaaccat      1200
     taccaaatcg gaacgttcat ggccagacag actattaaac aagatcttcc atcattttct      1260
     ggggacccat tagagtggcc catattctat gctgaatttg aaaatagtac aaaaacttgt      1320
     aattttacta attatgaaaa cttaagtaga cttagaaagg ctctagtagg acgtgctaaa      1380
     gaatgcgttc agtcactatt ggttttacca gataatgtcg actcaattat cgatatccta      1440
     caagagcgct atggggatcc atcttacata ataagattgc ttcttgacaa gattaaacaa      1500
     ctaccagtag ttagggacga caaattcgaa aagctttttg cattctacga cataatcaac      1560
     aatcttattc acactttgtt aaatgtagga gatgtggatc aattaagaaa cccattaatt      1620
     tttgcagaaa ttttagacaa actacccgta cctcaacgta tcgccttcat caaacattat      1680
     caaaagctaa aaccttctga gccaaaaata attgtatttc aatcatggct gggcgagaca      1740
     atcaaagctg ccacagtttt aggatttggc cagaatctca acaagtcgaa agactgcaca      1800
     ctgacagttt caggtattcg aaatggcacg gacaaaagca aaaacaaagg attttgtaat      1860
     tactgcaagc tgagcgatca ttatgttaca acttgtttca aatttaaaga tttacatatc      1920
     gacaagcgct gggagcatgt ttctaaaaat ggcttatgta tctcttgcct cggtaaaaat      1980
     catttactaa aagactgtaa acgtaaaagg caatgcaata ttaacaattg tagatacaat      2040
     cataacagcc ttttgcacaa agacaatttt gaaaacataa aaacaaacaa gtctgacgat      2100
     ggtgatcaat cagtttccaa caacttagaa aaaaactgta acgtaaactt tagtgcagca      2160
     aagttttgtt aaaagtggta catgtcaccc ttataggacc aaataatact attgacacat      2220
     atgctctcct tgatgaggcg tcaaccatat cattgattga cgagaacttg gctaacaatt      2280
     taggtcttga aggtccaacc aaaccattga aaatgcaatg gactaacaat gaagtttatg      2340
     aacaagataa tctctaaagt agttagcgta cgcattaaag gtattggcat gaatactaag      2400
     acacacatga tgagaagagt aagaactgtt tcsaatctta atttgccaca acaaacttta      2460
     agcatagacc acatgacaga caactttaag tttttaaaga attttacaca ttgctcttac      2520
     aatcaggcac agccaagaat tctaatagga caagataact ggtctcttat agtgtcccgc      2580
     aaactaaagt acgaatcctt tagcggccca gttgctagca acacattgtt aggttgggtc      2640
     gtacatggct taacacaacc tgaaagactt cttgccgaga ccaaccatac ctttcacgta      2700
     aatgaatatt ttcccgaaaa ggacgatcta gatgaactac ataacctggt taagtcttac      2760
     tggtcaattg aaaacgaatt tgcaactcaa aaagattttc ctatgtctgt agacgacaaa      2820
     agatgcatga atattgttaa caacacctta aaacgagttg gcaatagatt cgaatgcgga      2880
     cttttttgga aaaatgatag cattcagctt ccggaaagct ataagaacgc tttctctagg      2940
     ctactgtcat gtgagaagaa aattgacaaa attcctgagt atggtcaaaa atataatgaa      3000
     gtcatgcagt cttatatttc gaaagggtat ttaaaaaagt taaatcccac agaagctaaa      3060
     tacgaaacaa aactaaccta ttatctgccc catttcggtg tgcaaaatat caataaaccc      3120
     gaaaaattga gaatagtatt cgatgccgct tctaaaagcc ataactactg cttgaatgat      3180
     ttcttattac ccggacccga tctttatact caactatctt cagttctcat gaactttaga      3240
     aaaaataaaa tagcctttgt aggagatata aaagaaatgt ttttacaaat tcaagtacca      3300
     gaaaaagaca gacaagctca aagaatttta tggagaggga ataaaagaca tgaccctccg      3360
     gacgtttatg aaattcaagt tttatttttt ggagcaaaat gcagtccgag tatcgcacaa      3420
     caagttagaa atcacaacgc aaatgagttt aaggaaaagt atccgaaagc ctgtaaagac      3480
     atattattaa atcattatat ggacgactac ttaggcggag ctgatgacat agacagcgcc      3540
     gttcaactga ttaaagacgt atcatttgtt cacaaacaag gcggattcca gatgtgtaac      3600
     tggatatcaa attcagtaga ggttctcaac caaatagatc cactcaattg tcacaacaaa      3660
     gctcaggctt cgcccaaaat gaaaacacta acagaagaac gtgtcttggg gttaatttgg      3720
     aattacgaaa acgacacatt tacctataat ctacaattta ctaaatcaca taatgaaata      3780
     gtaaacacat cccgacgacc aactaagcgt gaggtcctga agattacaat gtctatcttc      3840
     gacccattag gtttttgtca aaccttctta taacaaataa gatactttta caagccatat      3900
     gggatagtgg tattggctgg gacgacgaaa taatagacga gcattttgtg atttggaaaa      3960
     gctctgcgaa tcattccaaa aaatcaaaaa ctttgcaata ccaagactta tgacaaaatt      4020
     acctttaaat gattgtgaca ttcagctaca tatattctct gagcctccga atatgcatac      4080
     gcggcatgtg catacattcg ttttaaaaga gatcggtcca tcgattgtat gttaataaca      4140
     gccaagtcaa gagttgctcc ccttaagcct atgtcaatcc caaggctgga attacaggat      4200
     gccttgctag gagctagaat gagcaaatca ctattggaat cgttacaatt acccataagt      4260
     aaagtttatt tatggacgga ctctcaaatt gttctgtact ggttaaagtc tagcagcaaa      4320
     cgatttaaaa cctttgtagc tcagcgttta ggggaaatac aagaaacaac taatgtcggc      4380
     aactggagat acgttccttc taaaacaaat cctgcggatg aagcaacgaa gttcacaaag      4440
     gtagacttta atgcaaacaa tttatggata aaagggccgg aattcctgta caaagatatt      4500
     gtcgagtggc caaaaagtaa aataacctca gaagacgact ccaacgaata tgtaaatgct      4560
     atgactgaag caaaacatga accgattcta cctgatgtga acagattttc tagttggacg      4620
     aggtatttac gaacaacagc ttggttacta cgatttgtga acaatgtcaa aggtaataaa      4680
     gaacatcgag cttgtggcga attacagcaa aggaattgaa taatgccgaa gacgtaattt      4740
     acaaaaagat acaatctgat tcctttcaag ctgaaattca aagtgtacaa aaaggaaaag      4800
     ctatagggaa ttcaagtcgt ctaaaatcat tgccactgca tttatccact gatggattgc      4860
     ttagattgaa aggtagattg gataatttaa atgatgatga gtatgacatg aacgctaaaa      4920
     atccgattct attgagtaat gaccacccaa taactacact tctaatctat tctatcatca      4980
     aaaaaactgt cacatttgta ccgaaaccgt cgtttccaat ttgcgaatga aatactggat      5040
     aataaaatgt agaaattcgg tcaagaaaat aattcgtaat tgccaatttt gtaaaaatag      5100
     gcgtgccaaa ccacagactg ctcaatagga caacttccaa aatgtagaat tgaaccaacc      5160
     gaaagagctt ttttaaaaat tggtttagat tattttggtc ccatcgaggt gttggtaagc      5220
     aggagtcatg taaaacgata tggggtaatt tttacttgta tggccacccg ggctgttcat      5280
     ctagaaatag cagaggactt gtcttgcaac gcatttatgc atgtctttcg tcagttcggt      5340
     tgccgtcgtg gttttccaat agaattatat tcagacaatg gaaccaattt taaacgagca      5400
     agtaaggatc ttaaattgat tatagataat tggtcaaaaa acgaaatgac tcaattcttg      5460
     tcmcagaaaa attgcacatg gacattcaac ccccctttgt cgcctcatat gggaggagca      5520
     tgggaaagat taattcaatc agttaagaaa tatttatgtt tttacttagg aacgatttcc      5580
     aaaggaacat acccttaaaa cattattttg cgaaattgaa ttcatgatga atagtcgtcc      5640
     tcttttgttt gtgtcttctg atttaccgga ttctgaatta attacgccaa atgacttgtt      5700
     gatcggaccg aactatagag aatctttcca ctgtgatgta tcggatggag acatgaaatt      5760
     gttaaacatg tggagggcct ctcaaagact ggctgatatt ttttgggtta agtggagaaa      5820
     agaatataga acatttctat tgtgcagccg caagtgggtt aagaaatttg ataatttgaa      5880
     agaaggtgat attgtgctgg tcatggatcc agatttacca agaaatgttt ggcctaaagg      5940
     cattattgtt aaaacttatc caaaagataa ttttgttcga atcgtagatg ttaagataaa      6000
     agacaacatt tataaaagac ctatcgttaa gttaattaaa ttagacgtta agaaaacttt      6060
     gtaaaactaa gtaagtattg ccaaattgaa ttatcttacm aggcaatact tgggaggaga      6120
     a                                                                      6121
//
ID   BEL-12_DBp-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-263
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 647-647 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 263 BP; 118 A; 34 C; 38 G; 71 T; 2 other;
     tgttatatta atattactat ttcttattat ttgaatttaa aaagatgaca acgggaagag        60
     acagtgcttm aaaaatacct aacwgttaag ttccaaaaga ttaattaaaa aataaaaatg       120
     ctaatactaa aaataagtta tacataagta cgtgtaaaaa taaagagaag cataaacagc       180
     gtaatggata aaaaatccaa agtcagaaac ctgcgtggta tggatccgga ttttaatata       240
     taactacagg taaaccccca aca                                               263
//
ID   BEL-12_DEl-I repbase;    DNA;    INV; 5446 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5446
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 442-442 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(786..1145,1466..5140)
FT                 /product="BEL-12_DEl-I_1p"
FT                 /note="reverse transcriptase, and peptidase A17."
FT                 /translation="NTCTAVWREHDVATYQYGSNQRSAISAPNTSSRLPPF
FT                 NGNPDEWPTFISAFENSTSVAGFSNVENMLRLQRCLKGKAYDLVRDKLLSP
FT                 TMVPEVISTLKTFFGRPDQILDRLSTKQGEYPTSTRYSSENTPCFKCQSTQ
FT                 HQVAQCEGFCNLPYEEKQLIVRDNRLCFKCLKVHGRRCFSTRPCGIGGCES
FT                 RHHPLLHKGSQTNNVVASHQAKSPDGEQYFRIVPIKVHCSNVIIDTFAFLD
FT                 EGSSVTLIDEAFFKRFNLRGTLDPICMQWTNQTTRMERNSVRFNIRISGAD
FT                 DQKSYWLNNVHTVKNLGLPRQTVNVSELTAKYPHLNGIPLKSYSSAEPMLL
FT                 IGTNNWKLAVPRKLREGKWNDPIASKCILGWGLQGSGNAKTAFSMHHCQCN
FT                 WEEIDKTVKESFNVDSVTPRTLRSIDDEKALQILDSTCTKVDGHYQVGLLR
FT                 RHTNPVLPESYNSAMKRLDCLKSKISREPDLYDKIELQINNLLEKGYAVEM
FT                 SSAEMTIEHERVWYLPIFITHNPNKPEKVRLVWDAAAKSHGKSLNDFMITG
FT                 PDLLHPLTEVLMAFRVGKIAVCGDIAEMFHQIRIQEADSHAQRFIWFNKET
FT                 RAPRIFVMKAMTFGISCAPCIAHYVRDKNAKEYKLKSPRAFEAITEAHYVD
FT                 DYIDSLADETEAIKVSLEVRDIHAAGGFNIRNWASNSPEVLKHLLGDSITL
FT                 QPAKELGDAEKVLGMFWEPKTDMFKYFFKFTRMKRNILSEEAMPTKREALQ
FT                 VLMSIFDPLGFLSCFTIGLKILLQEIWRTGIGWDDVLPAPQLLFWEKWKGL
FT                 LSQAATVQVPRHYSPLLHIADFTELHTFVDASEFGYAAVCYFRIGKGDDIT
FT                 ISLVAAKSKVAPLKPLSIPRMELLAALTGARLSQKVRNTRNIKADEHIYWT
FT                 DSRTVISWLTMDPRNFYAFVMHRVGEIMETTNASQWHWVPTKLNVADMATK
FT                 FTSKPNPEEWVNGPHFLRQSRDQWPKQPDVCTFPNVKCDEIRRTVLVMRRT
FT                 SVKAIPLNVECFSDWKRLYRATATFLLYVGILQARCKAEKIARHLSIEQLT
FT                 SAKNILFRKAQQDGFKTELDTLQSSQNITKPSALIGFNVYIDDAGITRTQG
FT                 RADSINQNRDQIVLPKHNHITHLVVKDFHEKNHHMLHEGTINLIRSMYFIP
FT                 QLRIVYKSVRKSCQICKNNSAIPEPPQMASLPPARIASFERPFTYTGVDFF
FT                 GPILVTVGRHKEKRWGVIFTCLTLRAVHIEIAYSLDTSSRVMCLTNFMSRR
FT                 GTPKEIFSDNGTNFRATEKIVKEELKNIDFGKLVIKYDQIRWRFTEVTTAK
FT                 DGQVRSATIKTQHGIMVRPATKIAVLDVLPKSK"
XX
SQ   Sequence 5446 BP; 1741 A; 1237 C; 1161 G; 1303 T; 4 other;
     tatataagaa aggtacagtt ccgcactagc aaagggaaaa gacacagcgc agttgtactc        60
     gtatacatac aaaattccga tataccgtat actgtatgtg tatgcgaatt ttaactgcgt       120
     agataagagc aagacagttc cgcagaaaag aatttttgaa cacatgacgc cgtctagatg       180
     tgtatcgttt tcgtgataaa actaactgaa acaaactgac cactaaagct gtgagtaggg       240
     gcatagcttg cgaaagtaaa tacatttccc ccaacaggtc aaagaaaaga tcaattgtga       300
     aatcaattac aagaatacga aaatgttcaa tcgcgattac gataatgccm tatgtggcgt       360
     ttgcaaaaac cgcgacatta tttgggtgca atgtgaaact tgcaagactt ggtaccattt       420
     tgcttgcgtg cgcgaggaaa gtgacgataa ccttaaaggc tgggcctgcc ctacttgcga       480
     gcaaattaca tccaacaacg ctattaaaga tgtagacacc accagtaagg taccgcaagg       540
     tgcagccgca cagggcctag aagttagctc agtagctcct aaaaacaatt aaaaggctat       600
     ccggatccga tgcagatcgt ggaaaacaac ttgcagcaaa tcaacgtagc tgaggttgag       660
     atcgacaaaa cgagtttgaa ttattcaaag gccccaatca tcaacacatc cactaatgtt       720
     cttatgttac agatgttaga ggaaaagcgg gaagctgatc aaaaatatat ccagcaaaag       780
     tatgaaatac ttgcacagca gtgtggcgcg aacatgacgt tgccacmtac caatatgggt       840
     ccaaccagcg ctcagctatc agcgcgccaa atacttccag cagattacca ccctttaacg       900
     gaaatccaga cgagtggccm acctttataa gcgcttttga gaacagcacc tctgtggctg       960
     gcttctcgaa tgtggagaac atgttacgcc tccaaagatg tcttaaagga aaggcgtacg      1020
     acctagtgag agacaagctt ttgtcgccaa caatggtccc cgaggtcata agcacattaa      1080
     agacgttttt cggccgccct gatcaaattt tggatcgcct atcgacaaag caaggagaat      1140
     atccgtaaac aaggacaggc tggactcctg atctggcagt tcgcaacatc tgcgctacga      1200
     tggaagcatg caaactcgac gctcgcatca acaaccctat acttgtaaag gagttagttg      1260
     acaagctccc aaatcaatat aaattgactt gggcaatgca cccaaaagac ggatccattg      1320
     gaaacgtaaa ggcttttagt gattggttat acaagatcgc cgaagcagcc tccaccgtgg      1380
     tttcaacgcc gtactcaaaa ccaaataacg tacacactca caccagctac aacaccggac      1440
     ggccacaaca caccgaatcg gatgaacctc cacacgctac agctctgaga acacgccttg      1500
     cttcaaatgc caaagtacac agcatcaagt cgcacagtgt gaagggtttt gtaatctccc      1560
     ctatgaggaa aagcagctaa ttgttcgtga caatcgactg tgctttaagt gccttaaagt      1620
     ccacggaaga agatgcttct caactaggcc gtgtgggatc ggaggatgtg aatcaagaca      1680
     tcatcctctg ctccataaag gtagccagac taacaatgtc gttgcatctc accaagccaa      1740
     gtcccctgac ggagagcaat attttcgaat tgtgcccata aaagttcatt gcagcaatgt      1800
     tatcattgac actttcgcct ttttagacga gggatcttcg gtgacactca tagacgaagc      1860
     attcttcaag cgctttaact tacgcggcac tcttgaccca atatgtatgc agtggactaa      1920
     tcaaaccacc agaatggaaa ggaactctgt gcgctttaat attcgaatct caggagcaga      1980
     cgaccaaaaa tcatactggc taaataacgt tcacacagtc aaaaatttgg gcctaccaag      2040
     acaaactgtc aacgtaagtg agttaaccgc caaatacccg cacctaaatg gaataccctt      2100
     aaagtcttat tcaagtgctg aaccaatgct tctgattgga acaaataatt ggaagcttgc      2160
     tgttcctcga aaattacgag aaggaaagtg gaacgatccc attgcgtcga agtgtatact      2220
     cggttgggga ctacaaggct ccggcaacgc caagaccgca ttctctatgc accactgtca      2280
     atgtaattgg gaagaaatcg ataaaaccgt taaagagagc tttaatgttg actctgttac      2340
     tccaaggact cttcgttcca tcgatgacga aaaggcccta caaatattag atagtacttg      2400
     cacaaaagtt gatggccact atcaagttgg tctcctacgg cgtcacacca accccgtttt      2460
     accagaaagc tataatagcg cgatgaaaag attggactgt ctgaaatcaa aaatatcccg      2520
     ggaacctgac ttgtatgaca agattgagct acagatcaac aatttactcg agaagggtta      2580
     cgcagtcgag atgtctagcg ccgaaatgac tatagagcat gagcgcgttt ggtaccttcc      2640
     gatatttatc actcacaacc caaataaacc agaaaaggtt aggcttgtat gggatgcagc      2700
     agctaaatct cacggaaagt cactgaacga tttcatgatc acgggtcccg accttttgca      2760
     tcccctcact gaagttttaa tggcgttccg ggttggaaaa atagcagttt gcggtgacat      2820
     tgcggaaatg ttccaccaaa ttcgtatcca ggaagcagat tcgcacgctc agcgatttat      2880
     atggtttaac aaagaaaccm gagctccaag gatatttgta atgaaagcaa tgacttttgg      2940
     catatcctgc gctccatgca ttgctcatta cgtgcgagat aagaacgcga aggagtataa      3000
     actgaagagt ccccgagcct ttgaagctat tactgaagca cactatgtcg acgactacat      3060
     agacagtctg gccgacgaaa cagaagcaat caaggtttct ttagaggttc gggacataca      3120
     cgccgcagga ggcttcaata taaggaattg ggcatctaac tcccccgaag ttctgaagca      3180
     tttgctgggc gactcgatta ccctacaacc ggcaaaggag ctcggagatg cagagaaagt      3240
     ccttggtatg ttttgggaac cgaaaactga catgtttaaa tattttttca aatttacacg      3300
     aatgaaaaga aacatccttt ccgaagaagc gatgccaacc aaacgagagg ccctacaagt      3360
     gttgatgtct atatttgacc cattgggatt cttatcctgt ttcaccatag gcctaaaaat      3420
     tctgctacaa gaaatttggc gcacaggaat aggatgggac gacgtcttac cggcacctca      3480
     gcttttattt tgggaaaaat ggaagggctt gctttcccaa gccgcaacag ttcaggtccc      3540
     acgacattac tcgccattac tccatatcgc agacttcacc gaactacaca cctttgtgga      3600
     tgccagcgag ttcggatatg cagccgtctg ctattttcga ataggaaaag gagatgacat      3660
     cactatatca ttggtcgcag caaaaagcaa agtggcacct cttaagccgc tttccatacc      3720
     ccgaatggaa ctactcgccg ctttgactgg cgcgcgctta tctcagaaag tccgtaacac      3780
     acgtaacata aaggccgatg aacacatata ttggacggac tcaaggactg ttatttcatg      3840
     gctgacaatg gatccgcgaa atttttacgc ctttgtcatg caccgtgttg gagaaatcat      3900
     ggagactacg aatgccagtc aatggcattg ggttccaacg aagctaaatg tagcagatat      3960
     ggccacgaaa ttcacatcca agcccaatcc tgaagaatgg gtaaatgggc cacactttct      4020
     ccgacagtca agggaccaat ggcccaaaca acccgatgta tgcacctttc caaatgttaa      4080
     atgtgacgag atccgaagaa ctgtattggt aatgagaagg accagcgtaa aagcgatacc      4140
     gttaaacgtt gagtgttttt cggattggaa gcgcttgtac agggcaaccg ctactttctt      4200
     attatacgta ggaattcttc aagctagatg caaagctgaa aaaatagcaa gacacctttc      4260
     gattgagcaa ctaacgtcgg caaaaaacat tcttttcagg aaagcgcagc aggatggctt      4320
     caaaacagaa cttgacaccc ttcaatcaag ccaaaacata acaaaaccaa gcgcgttaat      4380
     cggcttcaac gtatacattg atgatgcggg aataacgcgt actcaagggc gggcggattc      4440
     tataaatcaa aacagggacc agatcgtact gccaaagcat aatcacatca cacatcttgt      4500
     agtaaaggac tttcacgaga aaaaccacca tatgcttcac gagggcacca ttaatctgat      4560
     acgaagtatg tactttatcc ctcagttgcg aatcgtatac aaatcggttc gaaaatcgtg      4620
     tcaaatatgc aagaataatt ctgcaatccc ggaaccaccg cagatggcgt cactccctcc      4680
     agccagaatc gctagtttcg aaaggccatt tacatacact ggagtggatt tttttgggcc      4740
     tatactggta actgtaggcc gacataagga gaagcgctgg ggcgttattt ttacatgcct      4800
     cactctacgt gccgtccata tagaaatagc ctatagcctt gacactagct cacgtgtaat      4860
     gtgcctaact aactttatgt cccgccgcgg gacaccaaag gaaatatttt cggacaatgg      4920
     cacaaatttt agagcaacag agaagatcgt caaggaggag ctaaagaaca ttgacttcgg      4980
     gaaacttgtc ataaaatacg accagatcag atggcgcttc acagaagtaa ccacagctaa      5040
     agatggtcag gtccgatctg ctacaataaa aactcaacat ggaattatgg tccggccagc      5100
     aacaaaaata gctgtactag acgttttacc gaaatcaaag taaacccttg tagctgttta      5160
     cgtagggggg aatgttaccg ccccagtaca gcaatttgaa atttaattct tattatttct      5220
     tttctacaaa attatcgatg gaaagaacga tacattttaa catcaatcga tgtgcatcca      5280
     ggaagagagg caactatcga aaaccaattg cagcacgagc ctcgagaaga gaagaagatt      5340
     ttttaaagct ctttataatc cagaatatat tttaaatata aataaattaa ccatcgtttc      5400
     aactaaaatg ctgttagaag cttcgtttta atggccggct gtaaca                     5446
//
ID   BEL-12_DTa-I repbase;    DNA;    INV; 5661 BP.
XX
AC   AFFI01003720;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DTa_;
KW   BEL-12_DTa-LTR; BEL-12_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5661
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003720; Positions   21735   16075.
XX
CC   Positions [4717-5298] - Integrase core
CC   'GTCAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..1736
FT                 /product="BEL-12_DTa-I_3p"
FT                 /translation="MVPNPSPLDEAKRQRANVKRNISRIKSIIDDHVEEEL
FT                 LNRSAAELQCRLGIMESYFRQALTIQSKIEPLDSTDNGRVDIEDTYITTKL
FT                 AIKQLLGEDLSSTVLESSTTAPPQSKRPRLPLPTFDGTHTEYKNFITSFTQ
FT                 LTAHENLSAIEKFNHLLNCLRGPALEAVKAFPVTSKNFPKALDKLKARYDK
FT                 PALIFMETITSIFKLQPVSSSNAHQLRSLIDNASALFSSLSSLGSDEQISQ
FT                 SMLICLIMDKCDQQTRNKWNESLDYSSLPSWNQCVNVLERHCQYLVSSGNS
FT                 SNQSRKAFQSKPNWSASNNAHNSSFALTKAMCILCSSSGHRLLACDQFRKL
FT                 DSQQRLEVVKRMACASTALAKAIRCRIARRKIAAEAAISRIIRYCTTTALC
FT                 RLSLHNHRLVRLNRSQLRMLIRNHSLADQLPILNHISAEHQLMIVR"
FT   CDS           1424..3715
FT                 /product="BEL-12_DTa-I_2p"
FT                 /translation="MRPVSEIGFTATSRSGKKNGLCVNCLGKGHKVSNCPS
FT                 KNRCRSCHQPHHTLLHHHSSLQAESPQPSTSSSQPIAATYAHSQPQPGGSV
FT                 AYSQPHFSGAPTYDSSLTHPIGAATHAHAQSVAKEGSQVILATAMVLVQDS
FT                 LGSYRLGRAHLDSCSQVNFMTEAFAQKLRLPRDKHSIQIRSIGVSHTHIKH
FT                 RTSTTIKSRLSPFELSLDLCITPTIAYQPDTHIDISTWNLPPNMPLADDQF
FT                 HLSRSVDMLLCAEAFFDILAVGQVKLGSHLPTLQKTLFGWVVAGSHRSTQS
FT                 RESYAYLAQSLSAIDTKLTRLWEVETIAASAKRLKPEHQLCEEHFKQTARL
FT                 EENGRIVVKLPFMDSPNQLGSSFDVARRRILSVERRLLRSPETYTQYRMFM
FT                 NEYEQMGHMSLVTNPDLSVPHYYIPHHCVMKPTSESTKLRVVFDASCKTSN
FT                 QLSLNDILLCGPTIQDDLFLLLLRFRLVRYALTADIAKMYRQVNVDINDRK
FT                 FQYILWRDFPGEQLRTYQLNTVTYGMASAPYLAVRSLHHLADFHGAEYPIG
FT                 ATAIRTSFYVDDLLTGADDLPTLRVVKDQVTKILECGQFPLTKWHSNHAEF
FT                 VESHTNKDLNPITDGVTSALGVQFDQTSDTLLFAFTPKNVPTTTTKRTILS
FT                 VASALYDPLGFLSPLIIVAKIILQELWLAKLSWDESVPQHLHIAWTKCLQS
FT                 FRSCSTFNFRFLAIAYRLSTNQFSFTDFVTLQFGHMAAPFTCVPNASMEPS
FT                 LSDSSQLNPEWLL"
XX
SQ   Sequence 5661 BP; 1542 A; 1481 C; 1201 G; 1437 T; 0 other;
     ttttggcgcc caacgtgggg cacgtgtgtt agttaaattg tttaaataaa ttaataatta        60
     cttatttaaa cgtgcaaaaa accttgcctt aatcgctcat tccgtctgca cacagctgca       120
     cacacacacg cataccaacg caagtgcagt ccagtgtcgc taaccaacgg gactattctt       180
     cgtcttcgct ttgcgctcgc tattcttgat ctactctcga ctcagaattg gaaacggaac       240
     gtttcgtttt ctgcattgct ttcgattctc gatctttctg tgcaccggtg agccgcttgc       300
     ccttacattt gtcgtaaatt aacggcaagt cgtcgcgcta caccgtcgca gaagttttct       360
     gtcgtttcgc acgcatcagc tttaacctca aaaaagttga ctgcactgaa aaaatcatgg       420
     taccgaatcc aagccctctt gacgaggcca agcgtcaaag agcaaatgtt aaaagaaaca       480
     tttcgcgaat taaatcgatt attgatgatc atgttgagga ggagttgctc aaccgctctg       540
     ccgctgaact ccaatgtcgt ctgggaatta tggagtccta ctttagacag gcactaacca       600
     ttcaatccaa aattgaaccg ttggattcaa ccgacaacgg gcgcgttgac atcgaggata       660
     cgtacattac aactaaattg gctatcaaac aactcctcgg cgaagatcta agcagcacag       720
     tgttggagtc cagtaccaca gcaccaccgc agtcgaaacg tccacgactg ccgctgccca       780
     cctttgatgg tactcacacg gagtacaaaa acttcatcac gtcgtttacg cagctcactg       840
     ctcacgagaa tttgtcagcc atcgaaaagt ttaaccacct tctcaactgt ctgaggggcc       900
     cagcactgga agcagtaaag gcgttcccag tcaccagtaa gaactttcca aaggccctgg       960
     ataagttaaa ggctcgatat gacaagccag cgctaatatt tatggaaaca ataacatcaa      1020
     tctttaaatt gcagcctgta agctcgtcaa atgcacatca attacgcagc ctcatcgata      1080
     atgcatccgc cttgttcagc tcactgtcgt cgcttggctc ggatgaacaa atctcgcagt      1140
     caatgctaat ttgcttgatc atggacaagt gcgatcagca aactcggaac aaatggaacg      1200
     aatcgctaga ctactcgtcg ttgccatcct ggaatcagtg cgtcaatgta cttgaacggc      1260
     actgtcagta cttagtgtcc agcggaaatt cctcgaatca atctcggaag gctttccagt      1320
     cgaagccaaa ttggtctgca tctaacaacg cccataactc ttcatttgca ctcaccaaag      1380
     ccatgtgtat tttgtgctcc agcagcggac acagactcct ggcatgcgac cagtttcgga      1440
     aattggattc acagcaacgt ctagaagtgg taaaaagaat ggcctgtgcg tcaactgcct      1500
     tggcaaaggc cataaggtgt cgaattgccc gtcgaaaaat cgctgccgaa gctgccatca      1560
     gccgcatcat acgctactgc accaccacag ctctctgcag gctgagtctc cacaaccatc      1620
     gactagttcg tctcaaccga tcgcagctac gtatgctcat tcgcaaccac agcctggcgg      1680
     atcagttgcc tattctcaac cacatttcag cggagcacca acttatgata gttcgctgac      1740
     gcatcctatc ggagctgcaa cccatgctca cgcgcaatct gttgcaaagg aaggatcaca      1800
     agttatttta gccacagcaa tggtgctagt tcaggactca cttggttcct accgactcgg      1860
     gagagcacat cttgactcgt gctcccaggt caatttcatg accgaggctt ttgctcaaaa      1920
     actgaggttg ccgcgggaca agcatagcat tcaaattcga agcattggcg tctcgcatac      1980
     acacataaag catcgcacat caacgacaat aaagtctcga ctttcgccct tcgaattatc      2040
     tctcgacctc tgtataacgc ctaccatcgc atatcaaccg gatacacata ttgatatttc      2100
     gacctggaat cttccgccca atatgccgtt agcggatgat caatttcatc tttcccggag      2160
     cgttgacatg ctgctatgcg cagaggcatt cttcgatatt ctcgcagtgg gccaagtcaa      2220
     actcggatcc catttgccga ctcttcaaaa gacgctattc ggatgggtag tcgcaggaag      2280
     ccatcgttca actcaatcaa gggagtccta tgcctatcta gctcaaagcc tatccgccat      2340
     cgacacaaag ttaacgcgtc tgtgggaggt ggaaacaatt gcagcatcag ctaagcgact      2400
     caagcccgaa caccaattgt gtgaggagca ctttaagcag acagcgcgtt tagaggaaaa      2460
     tggaaggatc gttgtgaagt tgccatttat ggactctccc aatcagcttg gtagctcctt      2520
     tgatgtagct cgtcgaagaa tcctcagcgt cgaacggcga cttctccgtt caccggaaac      2580
     ctacacccaa tataggatgt tcatgaacga gtacgaacaa atgggccaca tgtcgctcgt      2640
     aacaaatcct gacttatcgg tcccgcacta ctacatccct catcattgtg tgatgaagcc      2700
     aacgagtgag tccacaaaac tacgagtggt cttcgatgcg tcatgtaaga cgtcgaatca      2760
     actctcattg aatgatatct tactgtgcgg cccaactata caagatgatc tgtttctgct      2820
     tctgctacgt tttcgactag tacgctatgc cctaaccgcc gacatagcga aaatgtacag      2880
     gcaagtaaat gttgacataa acgaccgcaa atttcagtac attctctggc gagactttcc      2940
     aggtgaacaa ctacgtacat atcagctcaa cacggttaca tacggaatgg cttccgctcc      3000
     atacctcgct gtacgaagtc tacatcattt agcagatttt catggcgccg aataccccat      3060
     tggtgctacg gctataagga cttcatttta cgtcgacgat ttactaaccg gagcagatga      3120
     cctaccgact ttgcgagtcg tgaaggatca agtcaccaaa atactagaat gcggtcagtt      3180
     tccgctcact aaatggcact caaaccacgc ggaatttgtc gagagtcaca cgaacaagga      3240
     tctcaaccca atcacagacg gcgtgaccag tgcactggga gtacagtttg atcagacgtc      3300
     agacacatta ctatttgcgt tcactcccaa aaacgtgccc acaacaacca caaagcgtac      3360
     aatactttct gtcgcttccg ctctatacga cccacttgga tttctgtcgc cgcttattat      3420
     cgtcgccaag atcattctac aggaactttg gctcgcaaaa ctgagttggg atgaatccgt      3480
     accgcaacac ttgcatatcg cttggacaaa atgtctgcaa tccttcagaa gttgttcaac      3540
     tttcaacttt cggttcctcg ctattgccta caggctcagt accaatcaat tcagcttcac      3600
     ggattttgtg acgcttcaat tcgggcatat ggctgctcca tttacctgcg taccgaatgc      3660
     atcgatggaa ccatcgctgt ccgactcctc acagctaaat ccagagtggc tcctgtgaaa      3720
     cgaaagtctc tcccgaaatt ggaattgtgc ggagcgcatt tactggcgca gttgtatgca      3780
     aaggttcacc cactacttat ggacaagccg catacagcgt acttttggtc agactcccaa      3840
     attgttttac attggctaca ggaacactct gttacactat cgacgttcgt gggaaatcga      3900
     gtatctgaaa tccaagattc aacttcgaat ggagagtgga gatatgtacc aacattgttc      3960
     aacccagctg acattgtgtc caggggagca actacgcctg aactccgagc ctcaatatgg      4020
     ttttctggtc cctcgtttct attgcaacat atgtcaaact ggcccacgtc tcccagtcac      4080
     aagaatcttg acatggaact agtcaattcg gagaagcgaa aaagcacatt cacagccatt      4140
     gtgagttcta accatcttct tgaaaaattg gaaaccataa gttcgtacac tcgctgccta      4200
     cgcgtagtgg catggatgtt ccgtttttat cgactcacga gcaagaagga caaaccgcag      4260
     gcgggtaggt tgacaccaga agaactacga cacgcatccg attgcataat atggaatctc      4320
     caacatcaag cctttccgat ggaatttcaa cgtttgcaaa aatcttgacc gctaaacgga      4380
     caattaaagt acctcaatcc attcatcgaa ttatcgtcaa ggttccagct catcagagtc      4440
     ggtggcaggc tcgaaaacgc caatatccca gaaagtgaga aacatccgat ccttttgccc      4500
     aaaaagtcgc acatttcatg gatttatgta cggcatcttt atattcgcaa ctttcacgct      4560
     ggaccaaagg cgttggtggc gctcactcgt ttggaatgtt ggatcgtcaa cgtcagagac      4620
     ttagcaaggc gcgtcgtccg atcctgcgtt tcttgtgttc gctacaagcc gaaactgcaa      4680
     gagcaattaa tgggatcact acctgctgag cgactgctgc cgcaacaacc cttttccaag      4740
     tgtggcatag atttttgcgg tccaatcaac acttattttc gcatacgtgg aaagggtcct      4800
     gtaaagtcct acctggcagt cttcatctgc atggcatcaa aggctgtaca tatagaagtc      4860
     gtgtcagaac tatcgactag tgcatttctc gctgctctca agcgaatgat tgctcgacgc      4920
     gcattgccat cagacatcta ctgtgacaat gctaccaact ttacaggcgc tgctaatcat      4980
     ctccacgaac tgaagaaatt tatgttcgac cgagccacgc aagatgtcat ttattcattt      5040
     tgttcctctg actttattaa ctttcatttt attcctccta gggcaccaca tttcggcggc      5100
     ctttgggaag cggcggtgaa aagcgcaaag ggattgctca acagaacact tatgaataca      5160
     cggctgacat tcgaagagct caccacagtg gcggctgaag ttgaggccat tcttaattca      5220
     cgcccgctca caccattatc ttctgatccg agtgattatg gagcaattac tccgggtcac      5280
     ctattaattg gaaaatcgct gcgcgcttta ccagagcgcc aaattttgat gtcgtgacag      5340
     ccatcaaaca agagttctgg cgccgctggt catcagaata catcaacgaa ctgcgagccc      5400
     gcaccaaatg gtctcagtct acaacaaaca tcaacgttgg atctttggtc atcatacacg      5460
     atgataatcg ccctccacaa cattggaaat tcggccgtat cgaagccgtg gtagcgggca      5520
     aggatgggct ggttcgagtt gctcatcttc gaactcctac tggctactgt tctaggccag      5580
     ttcacaagct ggcattgatt ccaacatctg acctgaagga ctaagaagtg ttgaaagcag      5640
     atcctttcaa gggtgccggg a                                                5661
//
ID   BEL-12_DTa-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   AFFI01003720;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DTa_;
KW   BEL-12_DTa-I; BEL-12_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-244
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003720; Positions   16074   15831.
XX
SQ   Sequence 244 BP; 71 A; 52 C; 43 G; 78 T; 0 other;
     tgttcggtca aactgcgttt ttccctgtat atttttatct gtatgaatct gtatgaattc        60
     cagagtctgt gcactctgtt atctagtatg ttaactcaac tatgttaact caactgaagc       120
     tgtcaataaa gtagtacgaa aaagagtgcg aaccggagaa catcttttac tagcaagtct       180
     accaattttc acactgccca gatcctagtt tcatgtcgcc acaaaaacgc ttgtggatgc       240
     aaca                                                                    244
//
ID   BEL-12_DWil-I repbase;    DNA;    INV; 5929 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DWil_;
KW   BEL-12_DWil-LTR; BEL-12_DWil-I.
XX
NM   BEL-12_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5929
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5929
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           570..5927
FT                 /product="BEL-12_DWil-I_1p"
FT                 /translation="MTTRHSPIRRSPRLNALEALQEPDAAIDLPVDTGENA
FT                 TDEAPTANMNIESSIVAGIPEAVGADEHQETVCSAQPSGFQEARLRARIAE
FT                 LERQLQMVTRPATRAEGPPSLITDTMPATHRLESDRPINGLQPPLINTRPE
FT                 LPSTIGTMPLISPNTVGGWMTRKIPELPEFSGLPEDWPIFYCAFTETNSVY
FT                 GCTDLENNQRLVKALKGDARETVKSLLIHPRNVNAVINQLRFRYGRPEQLV
FT                 RSQLQSVRDVQPIQEHNLAKIIPFATRVSNLAAFLQSINESQHLANPTLLD
FT                 ELTSKLPLDKRVDWARRAASIKPYPTVIDFSVWLEELASVICTIVDSDHRE
FT                 GKRRILYTKFEEETRVEQHGQPCPNCYGSHDITECAEFRLASPTARWRLVK
FT                 KYRLCFLCLSPGHVVRKCTTKSRCHIGECGRAHHNLLHDFESNYRQASMSK
FT                 AGHGSPTRPQPVLNNGKQPSPEPRSQQPTQQMNLSCVDTKTTQLLFRILPV
FT                 TLYGPNRRVETYALLDEASSVTMIDEVLLKDLGLNGERSQLAVKWFKNMTT
FT                 QEPTKRINLHISGHDKNKKYELKNVHAVDGLDLPMQTLNQDYLQVINPQSR
FT                 FPVEAYTNAVPRILIGLDHKYLVVPSSTWETSNRGPYVAVTRLGWDVSGTF
FT                 HKHQHTSAPKPCLFAATDTDEVHKMVSEYFELENLGVKPTPPAPSDDDIRA
FT                 QSILNETTVELLGRYQTGLIWKRDNVNLPSSYKMALNRLETVERKMERDKQ
FT                 FAQEYKGMINDYISKGYARRVEREEDTAVGSGKIWYLPHFAVTNPNKPGKI
FT                 RLVFDAAAKVGNVSLNSELLKGPQHYRPLLSVLFHFREGAVAVTGDIKEMF
FT                 HQIYVQPQDRRSQRFLWRDGDRQREADVYEMQVMTFGAACSPSAAHHVMTL
FT                 NAMRHQQVDPRAVKAITDYHYVDDYVDSFATEDEAISVSARVRDIHKTGGF
FT                 ELRRFQSNSPKVVESLGQEGTTNPVGWAEAEEKILGLYWQPATDEFRFNVK
FT                 YQRIKDDVPTKRQFLSLIMSTFDPMGFLSCFTITGKLLLREIWRRNVLWDE
FT                 PLPKELNSAFQKWRHQLEGVGLFRCPRHYFGSEMVKSIQLHVFTDASESAY
FT                 AAVAYWRATYQNGDVQVSFVCGKTKCAPMRTMSVPRLELQAAVLGTRLMNA
FT                 VKSGHCMETEDAILWTDAKTVLRWICSTHRRYKQFVGNRVTEILESTDASQ
FT                 WRWVPTADNVADEATRPQGQVDFSQKSRWMCGPKFLQQPQDLWPQSTTDLT
FT                 DIEVAADVEESPCEFALVVANDEFIQFQRFSEYNRLLRTMTWVLRFVCRCR
FT                 RQQHEHGKYGLTAAECAEAELVLVRVAQREAFPDELHRLYANRPVQPTSEL
FT                 KGLLPYLDDLAILRASGRIDAALCLPYGARRPIILTHRHPLTDLIVRHYHV
FT                 RMKHQNVNATITEIRMKFWITKVRRVLQRVIRNCGVCKLQRATPTPPLMGP
FT                 LPEDRLKPGGWPFEYTGLDYFGPLLVTVGRRQEKRWVALFTCLRTRAIHLE
FT                 LAHDLSTDSCILAMRNFMCRRGPVTKLRSDNGKNFIGADREAKRFTDVFEA
FT                 DKIQDELATRCVEWIFNCPLNPAEGGVWERMVRCVKRVLAHTVKDVAPKEH
FT                 VLQSLLIEAENIVNSRPLTHMPISVDQEAPLTPNDLLKGTSNIPDTPAESE
FT                 ELPKPCETRKQWRMARLLRDRFWKRWVHEYLPTLVRREKWCARTQPIRKDD
FT                 VVYICDPATPRREWSKGIVEEVYTGADGIPRRAAVRVADGNRVHRVIRPVS
FT                 RLAVLDVMQSLHGGG"
XX
SQ   Sequence 5929 BP; 1679 A; 1397 C; 1566 G; 1287 T; 0 other;
     tcttttattc gcagtcctat tagatggtct ttacaacgtc gcaactggcg acgaaaccaa        60
     gaataaccac agtgggttat atgtgcagtc ctattggatg gactattgag cgtcgcaacc       120
     ggcgacgaaa ctaagaataa ccacagtggg ttatatgtgc agtcctattg gatggactat       180
     tgagcgtcgc aaccggcgac gaaaccaaga ataaccacag tgggttatat gtgcagtcct       240
     attggatgga ctattgagcg tcgcaaccgg cgacgaaact aagaataacc acagtgggtt       300
     atatgtgcag tcctattgga tggactattg agcgtcgcaa ccggcgacga aactaagaat       360
     aaccacagtg ggttatatgt gcagtcctat tggatggact attgagcgtc gcaactggcg       420
     acggaattaa gaatcaccac agtgagtgat aaagctgcag tcctagcgaa ggaacgagtc       480
     aacgtcgaac gcggtgacat acatacattg ctgaagtcac cagtggtatc accaaagtgg       540
     gtgatactcg tgtcagaaag ggcaccacca tgacaaccag acattcccca atccggagga       600
     gtccccggct gaatgcactc gaggcgctac aagaaccaga tgccgcaatc gacttgcccg       660
     tagacaccgg agagaatgca actgatgagg cgcctaccgc aaatatgaat attgagtcca       720
     gcatagtggc tggaataccc gaagctgtcg gcgctgacga gcatcaggag accgtgtgca       780
     gcgcacaacc tagcggattc caagaagcaa gactgcgtgc gagaattgcc gagttggaaa       840
     ggcaattgca aatggtaaca aggccggcga cacgtgcgga gggtccgcca tctttaatta       900
     cagatacaat gccagcaacg cataggttag aatcagatcg tccgattaat ggactacagc       960
     caccactaat aaacactcgc cctgagctgc catcgacaat tggaacaatg cccctgatct      1020
     caccaaacac ggttggtgga tggatgacta gaaaaatccc ggaactgcca gagttttcgg      1080
     gactaccaga agattggcca atattctact gcgcgtttac tgaaacaaat agtgtatatg      1140
     gatgcacgga cttggagaat aatcagcgtc tggttaaagc tcttaagggc gatgcccgtg      1200
     aaactgttaa atctctgctt atccatccca gaaatgtgaa cgcagtcata aatcaactaa      1260
     gattccgtta tgggcgtccg gagcagctcg tacgcagtca gcttcaaagc gtgcgtgatg      1320
     ttcaaccgat acaagagcac aatttagcaa agattattcc attcgctacg cgcgtgagta      1380
     acctggctgc gtttttacaa tctatcaacg agagccagca cctggctaat ccaaccctgt      1440
     tagatgaact aacctcgaaa ttgccgctgg acaagagagt ggactgggct agacgcgccg      1500
     catctataaa gccctacccg actgtcatcg actttagcgt ctggttagaa gaactagcta      1560
     gcgtaatatg cactatcgtg gactccgacc acagggaagg caaacgacga atactgtaca      1620
     cgaagtttga agaggagacg cgcgtcgagc aacatggcca accctgtcca aactgttacg      1680
     ggtcacacga tataaccgaa tgtgcggagt ttcgtcttgc ttcaccgact gcgagatgga      1740
     gacttgtcaa gaagtaccgt ctatgtttct tgtgcttgag tcccgggcac gtagttcgaa      1800
     agtgtaccac caagtccaga tgccatatag gtgaatgcgg gcgagcccac cataacctcc      1860
     tacatgattt cgagtctaat tacaggcagg cttcaatgtc aaaggctgga catggaagcc      1920
     ccacgaggcc tcaaccagta ctcaacaatg gcaagcagcc ctcaccggaa ccaagaagcc      1980
     aacagccaac tcaacagatg aacttaagtt gtgttgacac taagacaacg caactattgt      2040
     ttcggatcct gccagtgacg ctttatgggc cgaaccgtcg agtagagacg tacgcactgc      2100
     ttgacgaagc atcatcggta accatgatcg atgaagtgct actcaaggat ttgggcctta      2160
     atggagaacg cagtcaactt gcagtcaaat ggttcaaaaa tatgacaacc caagagccaa      2220
     caaagaggat aaacttacac attagtggac atgataaaaa caagaagtac gaattgaaga      2280
     atgtgcatgc agtggatggg ttagatctgc cgatgcagac cttgaatcag gactacctcc      2340
     aagtaatcaa tccgcaatca cgtttccctg ttgaggcata tactaacgcc gtgcctagga      2400
     tcctaatagg cctggatcac aagtaccttg tcgtgccatc cagcacctgg gaaacctcca      2460
     ataggggacc gtacgtggcc gttactaggt taggatggga tgtttctggg acgttccaca      2520
     agcatcaaca tacatctgcg ccaaagccat gcctatttgc agcaacggac accgatgaag      2580
     ttcataagat ggtcagcgaa tactttgaac tggagaacct gggggtgaag ccaactccac      2640
     cagccccttc agatgacgac atacgggcac aaagtatttt gaacgagacg acggtagaat      2700
     tactcgggcg gtaccagacg ggattaatct ggaaacgcga caacgtaaat ctaccttcca      2760
     gttataaaat ggcgttaaat aggttggaaa ctgttgaaag aaaaatggaa agagataaac      2820
     agtttgccca agagtataaa ggaatgataa acgattacat aagtaaagga tacgctcgac      2880
     gtgtagagcg agaagaagac actgcagtcg gcagcggcaa aatatggtat ttgccgcatt      2940
     tcgcagtgac gaacccgaat aagccaggga aaattcggct agtctttgac gcggctgcca      3000
     aagtgggcaa cgtgtcactg aattcagagc tattaaaggg accacagcac tataggccgc      3060
     ttctttctgt tctattccat ttcagagaag gagctgttgc ggtcaccgga gacatcaaag      3120
     aaatgttcca ccagatctat gtacagcccc aggaccgacg ttctcaacgg ttcctgtggc      3180
     gggatggaga tagacaacga gaagctgatg tgtacgagat gcaggtgatg acctttggag      3240
     ctgcctgttc tccaagtgcc gcacatcatg tcatgacgct aaatgcgatg cgtcaccaac      3300
     aagtagaccc acgagcggtc aaagctatta cagactatca ttatgtggac gattatgtgg      3360
     acagtttcgc cactgaggac gaagctatat cagtctctgc cagggtcaga gacatacaca      3420
     agactggagg atttgagcta cgccgatttc aatccaactc acctaaggtt gtggagtcct      3480
     tgggtcaaga aggaaccacc aacccagttg ggtgggctga agcagaggag aaaattcttg      3540
     gattgtattg gcagccagcg accgatgaat ttaggtttaa cgtgaagtac cagaggatca      3600
     aggacgatgt gcctaccaag aggcaattcc tcagtctaat catgtcaacg ttcgacccga      3660
     tggggttcct gagttgtttc accattaccg gcaagttatt attacgcgag atttggagaa      3720
     ggaatgtttt atgggatgaa ccgttgccaa aagaactcaa cagcgccttc cagaaatggc      3780
     gccatcagct agaaggagtg ggtctgttcc gatgcccgcg tcactacttt ggatcagaaa      3840
     tggtgaagtc aatacaatta catgtcttca ctgacgccag tgagtcggcg tacgcggctg      3900
     tggcctactg gagggccacc taccaaaatg gggatgtaca agtgagtttc gtttgtggta      3960
     aaacgaaatg cgctccgatg agaaccatgt cagttccacg actggagctg caggcagcgg      4020
     tgctcggtac acgcttgatg aacgctgtga agagtggaca ctgcatggag acggaagatg      4080
     ccattttatg gacagatgcc aaaacggtgc tgcgttggat atgcagcact catagacgtt      4140
     ataagcagtt cgtcggtaac agagtcacag aaatcttaga atccacagat gcttcccagt      4200
     ggagatgggt ccctaccgcg gacaacgtgg cggatgaagc gacgaggcca caagggcaag      4260
     ttgactttag ccagaaatcg cgatggatgt gcgggcctaa attcctacag cagccgcaag      4320
     atttgtggcc ccaatcaact accgatctga cagacatcga ggttgcagcc gacgtcgaag      4380
     agtcaccgtg tgagtttgcc ttggttgttg ctaacgacga atttatacaa tttcagagat      4440
     tctcggagta caaccgactg ttgaggacta tgacttgggt tctccgattc gtgtgtcggt      4500
     gccgtcgtca gcagcacgaa catggaaaat atggattgac tgcagccgaa tgtgcggaag      4560
     ccgaactcgt cttggttcgt gttgctcaaa gggaagcgtt cccagacgag ttgcatcgcc      4620
     tatatgcaaa cagaccagtc cagccgacga gtgagctgaa gggactgcta ccctaccttg      4680
     acgacttagc gattctacgc gcatctggga gaatcgatgc ggccctgtgt ttaccgtatg      4740
     gggcgagaag gcccatcatt ctcacgcata ggcacccact gacggatttg atcgttcgtc      4800
     actaccatgt aaggatgaaa catcagaatg taaacgcaac tatcaccgag atccgcatga      4860
     agttctggat aacgaaagtg cgccgggtac tgcagcgggt tatccggaac tgtggtgtgt      4920
     gcaaactcca gcgtgcaacc ccaaccccac ctttaatggg tccgttgcct gaagatcgcc      4980
     taaaaccggg tggatggcca tttgagtaca ctggtttaga ctatttcgga ccactacttg      5040
     tgacggtggg tcgacgccaa gagaagaggt gggtggctct attcacctgt ttaagaacta      5100
     gagcaattca cctggagcta gcccacgatt tgtcaacaga ctcctgcata cttgcgatga      5160
     ggaattttat gtgccgccga ggaccagtaa caaagctgcg tagtgacaat gggaagaatt      5220
     tcatcggcgc agacagggaa gccaaacggt ttaccgacgt ttttgaagca gacaagatcc      5280
     aggacgagct tgctacccgt tgtgtggagt ggatttttaa ctgccctctc aaccccgcgg      5340
     agggaggagt ctgggagagg atggtccgat gcgtaaaacg ggtattggct catacagtaa      5400
     aggatgtggc cccgaaggaa cacgtattgc aaagcttgct cattgaggcc gagaacattg      5460
     tgaactcaag gccgctaacc catatgccaa tttcagtcga tcaagaggca cctttgacgc      5520
     ccaacgacct actgaagggg acgtccaaca ttcctgatac acccgcggag agtgaagagt      5580
     tgcctaaacc gtgtgaaacc aggaagcaat ggcgcatggc acgactactg agggaccggt      5640
     tctggaagcg gtgggttcat gaatacctac cgacccttgt gcgtcgcgag aaatggtgcg      5700
     cgcgcaccca gccaatcaga aaggatgatg tcgtctacat ctgtgaccct gcaacaccac      5760
     gacgagaatg gagcaagggt atagtcgagg aggtatacac cggagcagat gggatacctc      5820
     ggcgagcagc tgtaagagtc gccgatggaa atagggttca cagggtaata cgtcccgtct      5880
     ccagactagc ggtcctagat gtgatgcagt cgcttcacgg gggcgggga                  5929
//
ID   BEL-12_DWil-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   scaffold_181136;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_DWil_;
KW   BEL-12_DWil-I; BEL-12_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-353
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181136; Positions 1748944 1749296.
XX
SQ   Sequence 353 BP; 104 A; 58 C; 83 G; 108 T; 0 other;
     tgtcgcggga cgggaattga tcaccgaata attagcagcg gggtgacagt caccgtctag        60
     ctatagctgt tagtatctag tattttatat ttaagttttt tggcgcttga tgaatatggc       120
     catactgtga aatatgaaat tcaagtttag cttccgcatg ttctttctct cttgttgtgt       180
     aagccgagaa ggacacactg cggtaagaat aggtcctaaa tgtacttgca catatctctt       240
     aatattaatc tttacagaat aaaacatcca atgagttaga tttgaacgag atgcgtttga       300
     atttaaacag cggttgttaa aggcaacggt cggcagaggt agagagagcg aca              353
//
ID   BEL-12_LH-I repbase;    DNA;    INV; 5954 BP.
XX
AC   ADOQ01018085;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_LH_;
KW   BEL-12_LH-LTR; BEL-12_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5954
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01018085; Positions    2152    8105.
XX
CC   Positions [4956-5375] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1743..2297,2301..5375)
FT                 /product="BEL-12_LH-I_1p"
FT                 /translation="MSIPERINAIKKRDLCLNCMRATEHRANDCKSGECKK
FT                 CGKRHNTLLHLTAPTTEQNTSPREEKPVAATISTDKKIALASSSSLSSSSH
FT                 DNSKRHVWLSTAVVKILNHHNKWSTCRVLLDSGSQSHFITEALVKRLGLTL
FT                 HNISVPIVEINQAISQIQNKVKVSFASRLYEYQRSVECLVLRQITDIPMTQ
FT                 GDDCNIVTPSNLRLADPSFHIPENIDLLLGAEIFWEILCVGQMKATLSHPV
FT                 LQKTLFGWILGGATTALPRSYQEDRIVCNVITNQDLHEDLTKFWEIEHCCN
FT                 RPILTREEKLCEEHFMKAVRRNIDGRFIVKLPFKEDMIELLGQSKSTAQRR
FT                 FCSLERRLQGNLKLKNQYVQFIREYIQLGHKEAIEDSELTEPGYYLPHHLV
FT                 IKDTSLTTKLRVVFDASCKTSTGYSLNDVLMVGPVLQLDILDIILRFRLWQ
FT                 FVMTADVEKMYRQVWIDDSQRRYQRILWRENPQQDIHTYQLKTVTYGTSSA
FT                 SYLATRALQQIAHLKQDKLPKGASVILSDFYVDDLVTGSNCIQQANIIRDE
FT                 VIIILSEAGFNLRKWASNVPALLLSLSTSSLSDSIVILDKDESVSTLGLQW
FT                 HSVNDVLQYNVKHRTPAEIITKRTILSSISQIFDPLGLLGPITVTAKIFMQ
FT                 HLWQLKIGWDETVPLDVQTRWRAYESQLCALNGLKIPRKVIEEAHSLSLEL
FT                 HGFCDASMEAYGACVYVRTSYKNFHRAHLLCAKSRVAPARSVTLPRLELCA
FT                 AQLLAQLMQRIRKAIPTKFDGIYYWSDSTITLGWIQTNSKRWSVFVANRVG
FT                 QIQELSDSTSWNHVKTTENPANIISRGISPTQLLQAQLWWKGPPWLSLDRN
FT                 KWEIESTEVSSHENLPEARKTALIAKNFTKEWSIFYTISSMRRLQRITAYI
FT                 LRFIDNSRKPRENRNAGSLTAKKMKRATLRLARIVQSYSFFTEIKALHNQQ
FT                 AIPRNSKLLGLAPFLDHDGIIRVRGRLACSKLPYAAKHPIVLPSKHNFTKK
FT                 LIEYEHERLLHAGSQMTLASLRQRFWPISGRSAVRQVTRACIKCFKTAPSP
FT                 NQVIMANLPTPRVSQSRPFMHCDINYAGPFMIRDSKKRNSKSSKTYAAVFV
FT                 CLSCKAVHIELVFDLSTEAFLNAFKRFISRRGKPSDIYTDNGTNFVGAARE
FT                 LKELRQHVVKDIQQERLSKVCAQEGISWHFNPPQAPHFGGIWEAAVKNAVK
FT                 "
XX
SQ   Sequence 5954 BP; 1927 A; 1298 C; 1237 G; 1492 T; 0 other;
     gtcgagtctc agtttttcct tatatattat tatatagttc ttgttcgtac acatacgaca        60
     aacgtgaaca cacgtgacac gagtcaataa aatccaataa aaaaaggtaa taagcgaacc       120
     agtgcacatt gtattttcat tacacacaaa acagtgacaa acattggtcc ttcgagccgg       180
     attatttgtt aacgaacgaa gatattcggt agaaaacacg cataattgtg ctcacaagac       240
     aaacagaagt gcatttttcg atcacgaaga aagaaaatct gttcagccta cactcacaag       300
     gatcactagg actggtgaaa acattcccga acgccaagcg tcggacatat tgtgactgta       360
     gaacattgca agacgccaag cgtcggacat attgtgactg tagaacattg caagacgcca       420
     agcgtcggac atattgtgag tgaaacgtgg caagacgcca agcgtcggcc atattgcgaa       480
     aaccacgttg caagacgcca agcgtcgagc acattgtgat tgcaaacatt gcaaaatacc       540
     aagcgtcaat catactacaa gggcaataca ttgcaaggat ccagtcggaa gtgattgagc       600
     gagcgacatt tgagacgttt cctacacaag catttggagg ttaaaggtaa gtccccaatc       660
     attttctatc tcatttcctc ttctatccta cacagcaaat tacctcaaca caatggcaga       720
     gttgaaaaaa cttaaacaaa cacgtggtgt attaaaatca acgctgacac gagcgatcac       780
     gtttctcgat tctgaaaacg ctcagcaagt aattttgcca caattgcgag agcgcaagga       840
     caaaatttct gagacatggg aactattcaa cgatatacaa gcgcaaatcg aagagaaaga       900
     agaaaatgtc aacggttcgg aggagagaga ggaattcgag aacgcttact tcgacatagt       960
     atcaagattt gagcaattat taattgaacg cgaattcgtt gcagcacggg ggccaggtgt      1020
     ggctcaactt caacgcacag gaagtcaaac tcaggcaagt aatttacgat taccaaaaat      1080
     cgagcttcca acatttgctg gtaattacga agagtggtac acgtttatga cacatttaaa      1140
     tctctaatac atgacgttga aaatatttct agcatccaaa aatttcatta tctacgatca      1200
     gcacttcgag gtgaagcagc aacagtaata caatcccttg aagtgtccac agctaattac      1260
     gaggaagcat ggcaaatgct gacggcccgg tacgataaca aaaggctgac aattcaaaaa      1320
     cacatcaagg caattttcga atacccgcaa tcacgaagga aaatcacgca gcattacgat      1380
     ccctctgcga cggaatctta aaacatgtac gcgcactaaa ggctttagga cgattgaccg      1440
     agcagtgggg agatttgctt gtttacttaa ctacaagtaa acttgacgcg atcaccaaca      1500
     gagagtggga gaacagtctt accacaacag aatatccaac gttacagaat ctcataaatt      1560
     ttctagaacg acgctgtcat acattagaaa ttgttcaaaa aagagctcaa ccagttaaca      1620
     cattttccaa tacggataag cagcgacatc aaaggacatc atcgcaaatc gcaacacgag      1680
     gaaacaagtg tcctgtttgt caaggcaaac attttgtatt tgcatgtgat tcactcttga      1740
     aaatgtcgat acctgagcgc atcaacgcaa ttaagaagag ggatctgtgc ctgaattgta      1800
     tgagagcgac ggaacatcgc gcaaatgact gcaaatcagg tgaatgtaag aaatgcggca      1860
     aaaggcacaa tacattgctg catctcacag caccgacaac tgaacagaat acttcaccaa      1920
     gggaagagaa acctgttgca gctactattt caactgacaa gaagatagct ctcgcatcgt      1980
     cttcatcttt gagctcttca tctcatgaca attccaagag acatgtctgg ctgtccacgg      2040
     ccgttgtaaa aattttgaat caccacaata aatggtcaac gtgcagagtt ttattagatt      2100
     ccggatccca atcgcatttt ataacagagg cactagtcaa gaggctggga ctcacgttgc      2160
     acaacatcag cgttcccatt gtagaaatca accaagcaat tagccaaatc caaaacaagg      2220
     taaaagtatc atttgcttcc agattatatg aatatcaaag gagcgtcgag tgtctggtgt      2280
     tgcgacagat aacagattga attccaatga ctcaaggaga cgattgcaat attgtcactc      2340
     catcgaattt acgtcttgcc gatccaagtt ttcatattcc agagaatata gatttacttc      2400
     taggagccga aatattctgg gagattttgt gtgtcggcca gatgaaagcc accttgtctc      2460
     atccggttct gcaaaaaaca ttgtttggat ggattctagg tggagcaacc acagctttgc      2520
     cacgatcgta ccaggaggat cgcattgtgt gcaacgttat tacaaaccaa gatctccatg      2580
     aggatctaac gaaattttgg gaaattgagc attgttgcaa tcgtcctatt ctcacgcgcg      2640
     aagaaaaact ttgcgaagaa cacttcatga aggcagttcg caggaacatt gatggtcgat      2700
     tcatagtaaa acttcctttc aaagaagaca tgattgaatt acttggacaa tcaaaatcaa      2760
     cagcgcaaag gcgattttgc tcattggaac gaaggttgca aggaaacctg aaattaaaaa      2820
     atcaatatgt acaatttatt agagaatata tacaacttgg gcacaaggag gcgattgaag      2880
     actctgagtt gacggagcca ggatattatt tgccgcatca tctagtcatt aaggacacga      2940
     gtttgactac aaaattacgt gtagtttttg atgcctcatg caaaacgtcc acaggatatt      3000
     cactaaacga cgttctcatg gtgggaccag tactacaatt ggacattctg gacatcatct      3060
     taagatttcg tctctggcaa tttgtcatga cagcagacgt tgaaaaaatg tatagacaag      3120
     tgtggatcga cgattcgcaa agacgatatc agcgcatatt gtggagagaa aatccgcaac      3180
     aagatattca tacttatcag cttaaaaccg tcacttatgg aacatcttct gcttcatatt      3240
     tagccactcg agcgttacaa caaatcgcac atttaaaaca ggataagctt ccaaaaggag      3300
     cttcggtgat tttgtcagac ttctacgttg atgacctcgt gacgggttca aactgcattc      3360
     agcaggcaaa cattattcga gatgaggtga taatcatatt atcagaggca ggattcaacc      3420
     tacgaaagtg ggcctcaaac gtaccagcac tattacttag cttatcaaca tcatcattat      3480
     cagattccat tgtaatactt gacaaggatg aaagtgtgtc cactcttgga ttacagtggc      3540
     attccgtcaa cgacgttttg cagtacaatg taaaacatag gacgccggcc gagataatca      3600
     cgaaaagaac gatactatca agcatatctc aaattttcga cccactcgga ttgctcgggc      3660
     caatcacagt aacggccaag attttcatgc aacatctttg gcaacttaaa ataggatggg      3720
     atgaaacggt tcctctcgat gttcaaacga gatggcgtgc atacgaatca caattatgtg      3780
     ccttaaacgg actcaagata ccgcggaagg ttatagaaga agcgcactca ctctcacttg      3840
     agcttcatgg attttgcgac gccagcatgg aagcctacgg tgcgtgcgtc tatgttagaa      3900
     cgagttacaa gaattttcac agagctcatc ttttatgcgc aaaatctcga gtcgcaccag      3960
     cgagaagcgt aaccttgcct aggttagaat tgtgtgcagc tcaattactc gcccaattaa      4020
     tgcagcgcat tagaaaagca attcctacaa aatttgatgg aatctattat tggtcagatt      4080
     caacaattac gcttgggtgg attcaaacga attcaaaacg atggagcgtc tttgtggcca      4140
     atcgtgtggg tcaaattcaa gaattgagcg actcaacttc ttggaatcat gttaaaacaa      4200
     cggagaatcc agccaacata atctcccgag gaatttcacc gacacagtta cttcaagcgc      4260
     aactttggtg gaagggaccg ccgtggctta gtcttgatcg caacaaatgg gaaatagaat      4320
     ccacagaagt ttcgtcacat gagaatcttc cagaagcgcg caagactgca ttaattgcca      4380
     agaattttac taaagaatgg agtatctttt acacgatctc atcgatgaga cgtttgcaaa      4440
     gaatcaccgc gtacatatta cgatttatcg acaattcaag aaaaccgaga gaaaatcgta      4500
     acgccggctc gttgacagca aagaaaatga agcgcgctac tctgcgactc gccagaatcg      4560
     tccagagtta ttccttcttt actgaaatca aggccttgca taatcagcaa gcaattcctc      4620
     gcaacagcaa actactcgga ttggcacctt tccttgatca cgatggcatt atcagggtta      4680
     gaggaagatt ggcatgctct aaactcccat atgcggcgaa gcacccaatt gtattaccgt      4740
     caaaacataa cttcacgaag aagttgatcg agtatgagca tgaaaggcta ctacacgctg      4800
     gatctcaaat gacgttagct tcactacgac aacgtttctg gccaatatct ggcaggagcg      4860
     ctgttagaca ggttactcga gcctgcataa aatgttttaa gacagctccc agccccaatc      4920
     aagtaattat ggccaatctt ccaactccaa gagtttcgca atctcggccg ttcatgcatt      4980
     gtgatatcaa ctacgctggg ccatttatga ttcgagactc taaaaaacgc aactccaaga      5040
     gttcaaagac ttatgctgcc gtatttgtat gcttgtcctg taaggccgta cacattgaat      5100
     tagttttcga cctatcgaca gaagccttct tgaatgcttt caagagattt atttccagac      5160
     gaggaaaacc atccgatatc tatacggaca acgggacaaa tttcgtcggc gcggccagag      5220
     aactgaagga attaagacaa cacgttgtca aggacattca gcaagaaaga ttatctaaag      5280
     tttgcgctca agaaggaata tcctggcact ttaatccgcc tcaagctccc cattttggtg      5340
     gcatatggga ggctgcggta aaaaatgcgg taaaatgaaa tttcatctca aaagagtggc      5400
     aagagtcgca ctgttaaact gtgacgagat ggaaacgcta ctcgcacaaa tagaagctgt      5460
     acttaaccct cgtcctctca ttccattaac attcgatcct aacgataact cctatcttac      5520
     tcccgctcat tttttgattg gggatagcct tactgcacca gttgaaccga ccttgctaga      5580
     catcgaaata aatcgtctct caaggtggca acgagtcaaa acaacttcaa catttttgga      5640
     aaaaatggtc taatgagtat ttaaattagc ttcagcaacg caccaaatgg aaatttggag      5700
     ccatctcgct gaaaccagga cagttggtga tcatacaaga ggacaacacc ccaccgctat      5760
     gttggccgtt ggctcgtatc gaggaggtgc atccaggcac tgatggaatc gtccgcgccg      5820
     ccactgtcag gacgaacaag ggaacataca agaggccagc cactcgcttg tgtcctctcc      5880
     cattggattc ggaagaaatc cgcgattaat tttttatctt tattgaaaat ttatattttt      5940
     caaggcggcc ggca                                                        5954
//
ID   BEL-12_LH-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   ADOQ01018085;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_LH_;
KW   BEL-12_LH-I; BEL-12_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-194
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01018085; Positions    1958    2151.
XX
SQ   Sequence 194 BP; 51 A; 28 C; 37 G; 78 T; 0 other;
     tgtttgatat taattctaaa tttacgtttg gtgctggtcg cgtagcatta agcaaactgt        60
     atgtaaaatt attttatatt gagtctattg agttatcaaa tttaatctaa ctagttgtta       120
     aggctgccat ctattgcatc gcaattaaat gtattatcgc cgtcttttgt tttttggcgc       180
     tcgagcagag gtca                                                         194
//
ID   BEL-12_MoPha-I repbase;    DNA;    INV; 5427 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5427
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1138-1138 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..5311
FT                 /product="BEL-12_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAAAGLIRSQRALHGRISRTVDNLKKLGQANITTGAV
FT                 EARLAGLEKYWSTFESQHETLLREHWDALSEDDYVTGDLISVVEETYYVNK
FT                 GILNDFAAQAARSGEASTSSTTTVTVSEGTSHRTTLPRIQLPQFSGKYSEW
FT                 NSFRDLFLSIMRQDASTSSVEKLHYLKTCLKGEAALLIRNVPTTAENFERA
FT                 WNTLVRRFENKRLLVRSFLSEFLALHRIKGESASELSNLYNRVRSTVDSLE
FT                 SIGRPVTSSEDFFVHSIVELLDPHSRREWENSINDSTDPPSYIELQRFIER
FT                 RLQTLEALQPSKSETGGTKTGSTAARQSRTLHTRQQEVKRGRCSMCRQDHF
FT                 TMACDTYKSKTAVERKKLVEAKDLCVNCLGRHKVSECASTKRCASCNEQHH
FT                 STLHDAFRESEAALTTVQHARHPPERPLTRLLATARVRVADRFGYLHVFRA
FT                 LIDQGSESCLVTEALVQRLQLPRTRASVAIYGVGGVQTGSARGLVTLQVSP
FT                 LGKGPTLSVPALVFPQLSIYEGTVEASTKTWNHLRGLELADPEFLATDPVD
FT                 LLLGVDFIALTLLEGVRRGGPQEPVAQQTTFGWMLFGPTGQAEPACRVAAN
FT                 TCRVEEDLTALVRNFWKQEELLSTTPPLSQEDRQCEEMFRLTHTRTEEGRY
FT                 VVRLPTKEPLPDFTATRISALRVLKSMERRFAREERFHHLYRDFLTQYREL
FT                 GHMSRVVQEEGTNRVINYLPHHGVMREASTTTKLRVVFNGSTPTPAGRTLN
FT                 QCLMTGPNLLPPLPEIILRWRQHRYVLATDVEKMFRQIVVHPDDRDLQRIL
FT                 WRDVATDDIAEYRLDTVTYGLACAPYLAMRTLHQLADDERERYPRGAAVLE
FT                 RDVYMDDVLTGAATLEEALELRRQLTDLCTAGGFPLRKWSANDFSLLDGVP
FT                 ADHRMKRELRDWHTQEAHSALGLQWHPRTDDFSFSTQQISIAGFTKRSVLS
FT                 LTARLFDPLGWLAPTVVSAKIAFQSTWLLQLGWDDTLDEDSAKFWQRFRDE
FT                 LPQLETIRVPRWIGVLNTSLEVELHGFADASERAYASVVYLRSPEEGSWRV
FT                 TLLAAKTKVAPIKPVTLPRLELCAAALLARLISQQRRALGLERAPLHCWSD
FT                 STVTLGWIQGHPSRWKTYVANRVAEIQTTAPDALWHHIPGQENPADCASRG
FT                 LLPGDLVKHELWWRGPAWLWLGTSAWPLKTGCLDTTELPDARTRAHAAVTT
FT                 TLTDEEPAELLRFSSLNRLLRVTAWCRRWLRFRGGRSSVDRTVEPCLTMDE
FT                 LDESRLQWIRRVQTQTFRKDLEALRQSQSPRPSTSLIKLNPITDSRGLLRV
FT                 GGRLKHSLLDPEERHPIILPADSHFTLLIVEDCHRRSLHGGVQLTLSLLRQ
FT                 RYWVLRGRALTKRVIHRCVRCVRWRAAPAPQQMGDLPQERVRPFRPFLNTG
FT                 IDYAGPVQLRTTKGRGHRSYKAYVAVFVCLSTRAVHLEVVSDYTTEAFLAA
FT                 LRRFVSRRGLCRTLWSDRGTTFVGADARLRELFSEYGSERRRLNDVLTAEG
FT                 IRWRFNPPSAPHFGGIWEAAVKSFKHHLRRVLGNATLTFEEMTTLLAQIEA
FT                 CLNSRPLQSLSDDPEDLTALTPGHFLVGDVPIVVPEPSLTDVPVNRLTRWQ
FT                 LVQSMRDHFWARWAQEYLHSLTQRPKWLKKESRYEVGRLCLIRQENSAPAH
FT                 WPLARIIRVHPGRDGLIRVVAVRTVAIENGRVVRKDFTRPITKIILLPVSH
FT                 AEEIDKEDAAQGDTPPTENA"
XX
SQ   Sequence 5427 BP; 1160 A; 1568 C; 1516 G; 1183 T; 0 other;
     ttttttggtc cttcgagccg gatactttac gtaagtgaag tgcgtgccac aagtgagtgc        60
     tgtgatcaag agaaattcgg agagcattga aatggcagcc gcaggattga tccgaagcca       120
     gcgagcgtta cacgggcgta tctcgcgcac cgtggataat ctgaagaaac tcggccaggc       180
     gaatatcacg acgggagccg tcgaagctcg tttggcaggg ttggagaagt actggtcgac       240
     ctttgagagc cagcacgaaa cactcctacg agaacactgg gatgccctta gtgaggacga       300
     ttacgtaacc ggagatctca tctcggtagt cgaggagacg tattacgtca acaagggcat       360
     cctgaacgat ttcgccgctc aggcagcgcg ctccggagaa gcgagcacct catcgacgac       420
     cacggttacc gtcagcgagg gaacctcgca caggacgacc ttaccgcgta tccagctacc       480
     gcagttctcc ggaaaatata gtgagtggaa ctcctttcga gacctcttcc tctcgatcat       540
     gagacaggat gcctcgacct catcggtgga gaaacttcac tatcttaaga cgtgcctcaa       600
     gggtgaggct gcattactca ttcgcaacgt gccgacgacg gcggagaact tcgagcgcgc       660
     ttggaacact ctggtacgac gatttgaaaa caagcggcta ctggtacgtt cttttctaag       720
     cgagtttctc gcgctgcatc gaataaaggg tgagtcagcc tcagaactga gtaatctgta       780
     caatcgcgtt cgaagcacgg tggattcgct cgagagtatc ggacgaccgg tcaccagttc       840
     ggaagatttc tttgtgcatt ccattgttga attgctcgac ccgcattcgc gacgcgagtg       900
     ggaaaattct ataaacgact cgaccgaccc accgtcatac atcgagctgc agcggttcat       960
     cgaacgccgg ctgcagactc tcgaggcgtt gcaaccttca aaatcggaaa ccggcggtac      1020
     caagacgggt tcgaccgcag cccgtcaatc gcgaacgctg catacgcggc agcaagaagt      1080
     taaacgcggc cgctgttcca tgtgtcgtca ggatcatttt acgatggcct gcgacacgta      1140
     taagtccaag accgccgtcg aacggaagaa actcgtcgaa gcgaaagatc tgtgcgtcaa      1200
     ttgcctcggc cggcacaagg tcagcgagtg cgcctcgacg aaacgctgcg cttcctgtaa      1260
     cgagcaacat cattcgacgt tgcatgacgc tttccgcgag agtgaggctg cactcacaac      1320
     tgtacaacac gcgcgtcatc cgcccgaaag accgcttacg cggctccttg ctaccgcgcg      1380
     cgtccgcgtt gccgatcgat tcggctacct tcacgttttc cgcgcgctca ttgaccaggg      1440
     ctccgagtca tgtctcgtta cggaggcgct agttcaacgt ttgcaactgc cgcgaactcg      1500
     ggcttccgta gccatatacg gagtcggcgg agttcaaacg ggaagcgctc gaggtctcgt      1560
     cacactgcaa gtctccccgc tgggaaaggg gcccacgctg tccgttcctg cgttggtttt      1620
     ccctcagctc agcatctacg agggaactgt ggaagcaagt accaaaacct ggaatcattt      1680
     gcgcggtctg gagcttgcgg atccggaatt cttggcgacc gatcccgtcg acctcttgct      1740
     gggagtggac ttcattgccc ttactcttct cgaaggagtg cgtagagggg gaccccaaga      1800
     gcctgtggcg cagcaaacga ccttcggttg gatgttgttc gggcctaccg gccaagctga      1860
     gcccgcgtgc cgcgttgccg ccaatacttg ccgggtggag gaggatctga ccgctcttgt      1920
     tcgcaacttt tggaaacaag aagagcttct ctctactacg cctccgcttt cccaagaaga      1980
     ccgtcagtgc gaggagatgt ttcgcctgac tcacactcgc acggaggaag gacgctatgt      2040
     tgtccgactt cccaccaagg aaccgctacc ggacttcacc gctacgcgca tttcggcctt      2100
     gcgcgtgctt aagagcatgg agagacggtt cgcccgagaa gaacgtttcc accatctcta      2160
     ccgagacttc ttgacgcaat accgagagct gggtcacatg tcccgcgttg tccaggagga      2220
     gggaacaaac cgagttataa attatcttcc tcatcacgga gtcatgagag aggcgagtac      2280
     gacaacgaaa ctacgcgtcg tattcaatgg ctcaaccccc actcctgctg gtcgcacgct      2340
     taaccagtgc ttaatgaccg gtccgaatct attgccaccg ctgccggaaa ttattctacg      2400
     ctggcggcaa caccgctacg tcctagccac ggacgtagaa aagatgtttc ggcagatcgt      2460
     cgttcatccg gacgaccgcg atctgcagcg catcctctgg cgtgatgtgg cgacggacga      2520
     catcgctgag taccgtctcg atactgttac gtacggcctc gcctgcgctc cctacctggc      2580
     catgcgcacc ttacaccagc tggccgacga cgaacgcgaa cgttaccccc gcggagctgc      2640
     cgtcttggaa cgagacgtct acatggacga tgtgctcacc ggcgccgcta cccttgagga      2700
     ggccttggaa ctccgtcgcc agctgaccga tctttgcacg gcgggcggct tcccgctacg      2760
     aaaatggtcg gccaatgact tttcgctgtt ggacggtgtg ccagctgacc accggatgaa      2820
     acgggagctc cgcgattggc atactcagga ggctcactcc gcccttggtt tacaatggca      2880
     tccaagaacc gatgactttt cgttctcgac ccagcagatc tccatagcag gattcaccaa      2940
     gcgctccgtg ttgtcgctca ctgcccggtt gttcgacccc ctcggatggc tggccccgac      3000
     ggtggtgagt gccaaaatcg ccttccagag cacctggctg ctgcagttgg gctgggatga      3060
     cactttggac gaggactccg cgaaattttg gcagcgattc cgagacgagc tgccgcagtt      3120
     ggagacgatt cgagtgccac gctggatcgg cgttctcaat accagtctag aggtggagtt      3180
     acacggtttc gccgacgctt ccgagcgagc ctacgcctct gtcgtctacc tgcgatcccc      3240
     ggaggagggg tcgtggaggg ttacacttct tgcagccaag acgaaggtcg ccccaattaa      3300
     accggtcacg ctacctcgtc tcgagctttg tgctgcagct ctcctggcgc gactcatttc      3360
     ccagcagaga agagcgcttg gtcttgagcg agcccctctt cattgctggt cggactccac      3420
     ggtgacgttg ggttggatcc aaggacatcc gtctcgctgg aagacctacg tcgccaaccg      3480
     agtagctgaa atacagacca cagctccgga cgcgctgtgg catcacatcc caggtcagga      3540
     aaatccagcg gattgcgcat ccagaggtct actacccggt gatcttgtga agcatgaact      3600
     ctggtggcga ggacctgctt ggctgtggct cgggacatcg gcctggcctt taaagaccgg      3660
     atgtttggac acgaccgagc tacctgatgc gcggactcgt gctcatgctg ccgtcacaac      3720
     cacactgact gacgaggagc cagccgaact cctgcgattc tcgtcactca atcgactact      3780
     gcgcgtgacc gcctggtgcc gacgttggct gcgatttcgt ggtggacgtt cctccgtgga      3840
     cagaaccgtc gagccctgtt taacgatgga cgaactagac gagtcgcggc tgcaatggat      3900
     ccggagagtg cagactcaga cattccggaa ggacctggag gcgcttcgac agagccagtc      3960
     tccgcggcct tcgacctcct taattaaatt aaatccaatt acagattctc gcggccttct      4020
     tagagtggga ggtcgtctga aacatagcct gttagatcct gaggaacgtc atccgatcat      4080
     tctgccagcc gactcgcact tcactctgct gatcgtcgaa gactgccatc gaagatcctt      4140
     acacggcgga gtgcagctga ccctgagttt gttgcgtcag cgttattggg ttctgcgagg      4200
     tcgcgccctg acgaaacgtg taattcaccg ttgcgtgaga tgcgtgcgtt ggagggcggc      4260
     accggctcca caacagatgg gtgaccttcc tcaagagcgg gtgagaccct ttcgtccatt      4320
     cctcaacacc ggcatcgact acgctggacc tgtacaattg cgaacaacca aggggcgagg      4380
     tcatcgttcg tacaaggcgt acgtcgcggt gtttgtgtgc ctgagcacac gcgccgttca      4440
     tctggaggtc gtgtcggact atacgacgga agcctttcta gccgccttac gacgattcgt      4500
     ctcccgacgc ggcttatgcc gtaccttgtg gagcgaccgc ggcaccacct ttgtcggagc      4560
     agatgcccgc ttgcgcgagc ttttttcaga atatggatct gaacgacggc gacttaacga      4620
     cgtcctcacg gcggagggaa tccgatggcg gttcaacccg ccgtcagctc cacatttcgg      4680
     cggcatctgg gaagctgccg ttaaatcttt caagcatcat ctgcggcgcg tcctggggaa      4740
     tgcgacttta acattcgagg agatgacgac cctgctggcg cagatcgaag cctgtcttaa      4800
     ctcacgacct ctgcagtctc tctccgacga tccagaggat ctcaccgctc tgacgcccgg      4860
     acacttcctg gtgggagatg tccccattgt agtgccggaa ccatcgctca ccgacgttcc      4920
     agtgaatcgt ctcacccggt ggcagcttgt gcagagtatg cgggaccact tctgggcacg      4980
     ctgggcccag gaatacctcc attcgctcac tcagcgaccg aaatggctga agaaggagtc      5040
     cagatatgaa gtcggacggc tgtgtctcat ccgacaggag aatagcgccc cggctcactg      5100
     gccactggcc agaattattc gagtgcatcc tggccgggat ggactgatcc gcgttgtcgc      5160
     ggtgcggact gtcgcgatcg agaatggccg ggtcgttcgt aaggacttca cgcggcctat      5220
     tacgaaaatc attcttctgc cagtcagtca tgccgaagag attgataagg aggacgccgc      5280
     gcaaggggat acgcccccca cagaaaacgc ttaattgatt ttttcttgtt tttgtttttt      5340
     cttattatcg tctccgggtt tagttagttt tgaaatctat tcgctgaagc cgagcattcg      5400
     ccagaaatcc tgccgaggcg ggcggaa                                          5427
//
ID   BEL-12_MoPha-LTR repbase;    DNA;    INV; 488 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-488
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1078-1078 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 488 BP; 117 A; 118 C; 95 G; 158 T; 0 other;
     tgttcagaat cggaattaat gctcggattc ggaattattg tgcacggggc tttaatcagc        60
     agtggccgtg accccacata ggaatttgtt ttaaaggtct ggaaatcata cattgcctaa       120
     taaggaaatg tttaaagtac gcgcattgag ttacccggca acggaaagat gctccgagct       180
     tcattcatta ccacctcgtt tcttttgtct atcattcgcg tcgttttttt cttattctgc       240
     cgtaagaatc tatcacgtcc gcatcgtgac cgcttcgctc ttcgcgaccg tattgttcta       300
     tcgcgaccat ctcgttcttc gcgaccgctt cgcttctcgc gaaattcaat ctcgcggcat       360
     aagagtttaa tttgttaatt gatatttgca ataaataatt gttaaaaaga aaagagacta       420
     gagccaattt tcccctcgtt cgttcgtatt tttcggtcct tctcacacgc gctcatacct       480
     cgcgcaca                                                                488
//
ID   BEL-12_SI-I repbase;    DNA;    INV; 5587 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SI_;
KW   BEL-12_SI-LTR; BEL-12_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5587
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 423-423 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4538-5116] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1634
FT                 /product="BEL-12_SI-I_2p"
FT                 /translation="MAEFESTVLQQNDIFYRINRTVENLKKRGKDNLTRQH
FT                 LDATLELLDSKWKKFADAHSVLLGKRTKELDSHKYFQDDLYDQCETAYIDV
FT                 KAEVLRMRDRAASPCALNTSLGSDTSRPVSSTARSLPKITLPKFSGDYQSW
FT                 TSFRDLFQSMVGSNDDIPAVEKFHHLKSSLTGDAARHIANVPVTADNFGPA
FT                 WDALVARYENKRAIVSAHLDKFFAIAPIARKSVSDLKGLVSTVKEALGGLG
FT                 ALGAPIDSWDFILVHFITRRLDPETREAWELRQGTATDPATFRELDDFLDG
FT                 RIRALEVIAPGNSSKTVKAAKTLATKPASRVNAANAYSLKCSFCDGSHFIA
FT                 SCNEFAAKPTEDRREFVVSKRLCANCLGNHRLTECKSAKRCRLCGGHHHTL
FT                 IHRASATSSAAMQPGQSAASEASSSAAALAVATGSGAISLHASGCRLDAPA
FT                 MTLLPTARVRSLEPLRTGN"
FT   CDS           2440..4101
FT                 /product="BEL-12_SI-I_1p"
FT                 /translation="MVKTSPADTHSDASFFLPHHGVLRPGSSSSKLRVVFN
FT                 GSAPSSSGVSLNECLHVGPKLQQDLADVLLRWRRYNFVFLADVEKMYRQIE
FT                 VHPNDRHFQRILWSRDGPPQEYQLCTVTYGLSCAPYLALRVLSQLAADDGP
FT                 RFPLAAPVLQSEMYVDDVLSGADTLSLAQSKAEQLNNLLMAGGFRLHKWVS
FT                 NDPAVLAKVEDARIESTAPRAFSLDALPRALGLAWNPRDDFFVFQLNLPRA
FT                 SNTLTKRVVLSRVAQLFDPLGWIAPIIVVAKIFLQGLWKLQVPWDQPLPAP
FT                 WAQRWLDFEAELNAISSISLSRWLGIHPSASMEIHGFSDASNAALGAVLYL
FT                 RCITIEGQTTVSLITGKSKVAPLKRPTIPRLELSAALLLSRLLSRVRTTLQ
FT                 LSSTPAHLWTDSSVVLAWLQGHPSRWKDFVANRVVAIHDLAPDASWHHVSG
FT                 TDNPADCASRGLSPRELLTHRLWWDGPPWLSSHLASWNTAAPPPDGTVDLE
FT                 ERPARPCHASVARPGALWELVFRYSKFMRLIRITAWLFRAAARFRRRLPDS
FT                 DALALTP"
XX
SQ   Sequence 5587 BP; 1034 A; 1814 C; 1455 G; 1280 T; 4 other;
     ttttctggtc cttcgagccg gattcgcgag tgagatcgat cgcgtattcg cgcgcggccg        60
     tatcagtgac tcctatctcg ccgccgctca gacactcgcg agttcgcgcc tatcttctga       120
     ctctcaaact cgacgggaat ctctctcatc tcgtgtgact gaccaatttc ggactgagtg       180
     atctccgtga attgtgactc cgmgtgctag ccgactgttc gattccgctc cacgcaagcg       240
     tcatggccga gttcgagtcc accgtcctgc aacagaacga tatcttctat cgaatcaacc       300
     gcacggtgga gaacctcaaa aaacggggga aggacaacct gactcggcag catctagacg       360
     ccacgctcga gcttctcgat tccaaatgga agaagttcgc tgacgctcat tctgttcttc       420
     tcggtaagcg aacgaaagag ctcgattcgc acaagtattt tcaagacgac ttgtatgatc       480
     agtgcgagac cgcctacatc gacgtcaaag cggaagtgct tcggatgcgc gatcgcgcgg       540
     cttcgccgtg tgcgttaaat acttctctcg gcagtgacac ttctcgccct gtctctagca       600
     ccgcgcgatc tctcccgaaa atcacgcttc cgaaattctc gggcgattac cagtcgtgga       660
     cgtcatttcg cgatctcttt caatccatgg tcggctccaa cgacgacatc cctgcggtgg       720
     aaaaattcca tcacctcaag agcagcctca ccggggatgc cgctcggcat atcgcgaacg       780
     tcccggttac cgccgataat ttcggtccag cgtgggatgc tctcgtagct cggtacgaga       840
     acaaacgtgc tatcgttagc gctcatttgg acaagttttt cgctatcgcc ccaatcgcgc       900
     gcaaatcggt cagtgattta aaaggcttgg tatctaccgt taaagaagct ctcggtgggc       960
     tcggagctct cggcgcgcct atcgattcgt gggatttcat cttggttcac tttattactc      1020
     gtcgactcga tcccgagacg cgcgaggcgt gggagctgcg tcagggtaca gccacggatc      1080
     cggcaacgtt ccgcgagctc gacgactttc tggatgggcg cattcgcgct ctagaggtga      1140
     tcgctcccgg gaattccagc aagactgtca aggccgcaaa aacgctcgca acgaagcccg      1200
     cctcgcgcgt taacgccgcc aacgcttact cgctcaagtg ctccttctgt gacggttctc      1260
     acttcatcgc ctcctgtaac gaattcgctg ccaaaccgac ggaggaccga cgcgagttcg      1320
     ttgtatcaaa acgcttgtgc gcgaactgcc tcggcaatca ccggttaacc gaatgcaagt      1380
     ccgctaagcg atgtcggctc tgcggtgggc atcatcatac tctcattcat cgcgcgtccg      1440
     cgacctcgag tgctgcaatg cagcccggtc aaagtgccgc gagcgaggcc tcatcctccg      1500
     ctgcggcgct cgctgtcgcc acgggctcgg gcgctatctc gcttcacgcg tccggttgtc      1560
     gcctggatgc gcccgcgatg acgttgctgc ccaccgctcg cgtccgcagt cttgagccgc      1620
     tccggacagg caattgaagc gcgcgctctt cttgatctcg gcgcggagct cagtcttgtc      1680
     cgtgaatcgt tcgcgcaact cctgcggtgt cctcgtcatc gcgcgagtat tcctctactc      1740
     ggagtcggat cgttaccatc gtacaccacg cgtggcgcac tcgctctccg attgcagtcc      1800
     tgcgtcgatc ccacgtttga gttcgacgct gccgcttacg ttgtgcctcg cgtgatgagc      1860
     cgggcgccag gagaggaggt ggacccgact gcatggagcc atctgggcaa tctgcctctg      1920
     gccgatccaa cctggtataa gcctggaccg gtggacctga tccttggctc ggacgtcctc      1980
     ggccatctat tcggcgaaac cttccgtcgt ggtactccgc gacaacccgt cgcgcagcat      2040
     tccaagctcg gctgggtaat atacggcccg tctggcgtgg tgccgaacct gtctacgccc      2100
     actgcatcgc cgtcgcacgg cattagcaat tgcccagacc gtgagctcga gactctactt      2160
     cgccaattct ggacgcagga ggaagtcgca cccgcgtccc aatccgcact cacggaggat      2220
     gaagctcaat gcgaggcgca ttttcgtgac acccaccggc gctctscatc aggccgatac      2280
     attgtccgcc taccgtttaa aacctctgtc tcatctctcg gtagctctcg ctcgcgcgcg      2340
     gagcgtgctc tccgccgact gcaacagcgc ttcgcgtcca atcaagaact cgcgcaactc      2400
     tacgccgact ttctccagga atacgagact ctcggccata tggttaagac gtcgccagca      2460
     gacacgcatt ctgacgcgtc gttcttcttg ccgcatcacg gggtgctgcg acccggcagt      2520
     tcatcgtcca aattgcgcgt cgttttcaac ggctcagcac cttcctcgtc cggggtctcc      2580
     ctcaacgaat gcctgcacgt cggcccaaag ctccaacagg atctcgccga tgtcttgctc      2640
     cgctggcgtc ggtacaactt cgtgtttctc gccgacgtgg aaaagatgta ccgacagatc      2700
     gaggtccatc caaacgaccg ccattttcag cggatactct ggagcagaga cgggccaccg      2760
     caggagtatc aattgtgtac ggtgacctat gggttgtcgt gcgctccgta cctcgccctg      2820
     cgcgtattgt cgcagctcgc cgccgatgac ggccctcgat ttccactggc tgccccagtt      2880
     ctccaaagcg agatgtacgt cgacgacgtc ctgtccggag cggatacgct atctctcgcg      2940
     caatccaagg ctgaacagtt gaacaatctg ctcatggcgg gcggctttcg ccttcacaaa      3000
     tgggtgtcaa acgatcccgc cgtccttgcc aaagtcgagg atgctcgcat tgagtctact      3060
     gcaccaagag cgttctcgct cgacgcattg ccccgggctc tcggtctcgc ctggaaccct      3120
     cgtgatgact tctttgtctt tcagttgaac ttgccgcggg cgtccaacac gttgactaag      3180
     cgagtggtgc tctcacgagt cgcccaactg tttgatcctc tagggtggat cgctcccatc      3240
     atcgtcgtgg cgaagatctt tctccaaggt ctgtggaagc ttcaagtgcc gtgggaccag      3300
     ccacttcctg caccgtgggc tcaacgatgg ctggacttcg aggcggaact aaatgccatc      3360
     tcgtctatct ctctctctcg ctggctcggc atccatccat ccgcctccat ggaaatccac      3420
     gggttctcgg atgcttcgaa cgcagccctc ggagctgtgc tctaccttcg atgtatcacg      3480
     atcgaaggtc aaacaacggt gtcactgatc accggaaaaa gtaaggtcgc tccgctcaag      3540
     cgtccgacga taccgcgcct cgaactttct gcagccttgc ttttgtctcg ccttctgtct      3600
     cgagtccgca cgactcttca actctcgagc acgccggcgc atctttggac cgattccagc      3660
     gtggtcctgg catggctgca aggccacccc tccagatgga aggacttcgt ggcgaacaga      3720
     gtcgtcgcca ttcacgatct cgctcctgac gcttcctggc atcacgtcag cgggacagac      3780
     aaccccgcgg actgtgcctc gcggggcctc tctcctcgag agctcctaac gcatcgactc      3840
     tggtgggatg gcccaccttg gctttcctct caccttgcgt cctggaacac cgcagctccg      3900
     cctccggatg gtacagtcga tttggaggag cgaccggctc gaccgtgcca tgccagtgta      3960
     gctcgaccgg gcgctctctg ggagctcgtc ttccgctatt ccaaattcat gcgcttgatc      4020
     cgtatcactg cctggctgtt tcgggctgcc gctcgatttc gacgacgcct tccagactcc      4080
     gacgccctcg cgctcacacc gcmggaaata gcagccgccg aaaagttttg ggtgctgcac      4140
     attcaaaggg cacatttcgc agctgaactt gccacctctc tctcaaggct ccgcgcttcc      4200
     tcgctcacat ccgttcctgc gccttactcc attcctcgat cctgaaggca tcctccggct      4260
     tggcgggcgg cttcagaatt ctcagctcga tcccgacgct aagcatccca tcctcttgcc      4320
     gcgcgattcg ttcctctcgc acctcataat cgaggagacc cacagccgca cactacatgg      4380
     gggcgtccaa ctcgtcctcg ccactctgag gcgtaaattt tggatcctcg gcggtcgagc      4440
     tcccatcagc aaggtcattc ggcgttgcgt ccgatgtgct cgttatcggg ccgccgccgc      4500
     ggaggaactt atgggtcaac ttcctccttc ccgagttact ccttcacggc cctttaccaa      4560
     cgccggggtg gactacgccg gaccgttcct gctgaaatcg tggcccggtc gctgtgctcg      4620
     tcgctacaag gccttcctgg tcctttttgt ttgcatggcc acctccgccg tgcatttaga      4680
     gctcgccacc gactattcaa cagctggatt cctggccgcc ttcaagagat tctgctctcg      4740
     tcgtgggatc tgtgccacac tagcaagcga ctgtggcacc aacctcgttg gggcggatgc      4800
     ggaattgcga cggatgttct cctccgcctc caaagatgtg ggcgaactgg ctaacctctt      4860
     agcctccgac ggcactcggt ggmttttcaa ccctcccgcc gcgccgcatt tcggcggcaa      4920
     gtgggaggcg gccgtcaaat cgaccaagtt ccacctgaag cgagttatcg gtgacactct      4980
     cctcacctac gaggagttca ccaccgttct cgttcaaatc gaggccgtgc tcaactctcg      5040
     ccccatctgt ccaatgtctg aggacccatc ggacatcgac gcgctcacgc ccgctcattt      5100
     tttgacgggt gacccgctta cgctagttcc agaaccatcg ctaacggacg tcccgctcgg      5160
     tcgactctcc cggtggcaac aggttcgact tatggtcgaa cgattttggc agcgttggtc      5220
     caccgaatac cttcaacggc tgcaagacgt cgctaaatgg caacattcct cccgacagat      5280
     caaggtggga tcccttgtcc tgattaggga cgagcgttat ccacctgcca agtggccact      5340
     cggacgggtc cttgagacgc acgctggcgc cgatggactc atccgcgtcg tgaccgtgcg      5400
     cacggccact tcgatcttca agcgacccat tgcaaaactc tgcccgttac ccataccgac      5460
     cgaagcttcc agcgatgttt aaacgcgctt cgagcttgcc attgtctctg ccgcaggacg      5520
     agctactcat tcattcatgt atcgtgctta gtttcggtgt cttgtcagac cccgaggcgg      5580
     gcggaaa                                                                5587
//
ID   BEL-12_SI-LTR repbase;    DNA;    INV; 413 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SI_;
KW   BEL-12_SI-I; BEL-12_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-413
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 424-424 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 413 BP; 88 A; 120 C; 77 G; 127 T; 1 other;
     tgttcagagc aaaatcggtc ttttmtcaat ttcagcatgc attattattt agaatattga        60
     ctcggagcat tcctgcctgc cgcgttgctt cacgaaaaca tcacgcgcaa atacgctcat       120
     gttcgcgtga tctgctccga acagagccaa tcagcgggtt ccgcgcgccg ctgcctgccg       180
     ccaaaatcgc ggatcctcgc tgctcgcatt ccggagcgcg ccagtctatc gctattcggc       240
     gtgcagacaa tcactcgctc tcgctcagtg taaaagttct tatctctcgc atctcattac       300
     gctgttgtaa attcgcaatt taataaagtc agtgctttac ctctctctcg tcattccgtg       360
     ttttctttct ctcatccctt tcttgctaag attatctcag acttctctaa aca              413
//
ID   BEL-12_SiCu-I repbase;    DNA;    INV; 5955 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5955
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4986-4986 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           170..5929
FT                 /product="BEL-12_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MEDDQRVFKQEGEGQDQLDQDEEQDFDGVRRSRRPNL
FT                 GIPPNLFGEWFHGTPATSSQQQPGSSATQPSPLELWRISQPKFHSTSIWSP
FT                 GGAGVTSQVKAKEEEDQQSAASHATSVSDILEQMQANDKEMDDVRKLEEFV
FT                 LQKAENLSLQNSLLRKQLKEEQEREERRRMEDVASYTSGSDRYDETTKSWV
FT                 PKIGAAVTLGGLKPTPKPRTQIWKAPSKEPVGPHVPETPKRKEQREEQTKK
FT                 VAQFTPPPTPKPRRVNFEERRAPGGRPPQALPMAEAPTGMDALANAIVQAL
FT                 QSQNQQTERFVARQSSASTLPTFTGNPLDWPLFAHHFRQSTEDCGFSPSQN
FT                 MARLEKALKGEARRTVRSLMIVPTNTEAVMERLEQRFGRAEYVIGALIDIA
FT                 KKTPTPKESKLSSFLDFSNAIQNLVTTVETLQVPAYRENPQLLTELVDKLP
FT                 DSFKIQWGMHRIRLGTTGASLLDFAEWISEIAEAASVVTVPKLSWKDKKEE
FT                 SSFAAEEVKSQSSSPPAAKPCPSCKKEGHGLPACESFKKMDLKAKWDFVKK
FT                 SNVCFRCLRPGHSIRNCKSKSSCRVDGCDRRHHTLLHGSPPASDSPEKSKD
FT                 KETDEKGKKMEEINATMDSFCGATLLRIVVVTLFGPAGKLTVNALLDEGST
FT                 VTLISSKVADELGIAGEVDPLRIKWTDGRTQEDKSSKKVECWIGPVDEKQR
FT                 YKLKRVRTVKNLSLPAQRTDLREIVKQYPHLQKTKLKVLPGERPVILLGQP
FT                 HIHLTVAREVIEKDEESPIITNTKLGWVLHGPARGEAADESSFLCHHETDD
FT                 DILHNLVKESFALESIGIKSSVSTRSKEDIAAEEKMKLLTRRIPDGSRWET
FT                 GLLWRMDNPQLPYSRDVAHRRLLSIERKLRKKPLIAQQYRDKIGHYLERGY
FT                 ARKLTREELQVPSKVEWYLPHFDTQHPNKPGKIRIVFDAASRAKGVSLNDY
FT                 LLTGPDLLVSLPGILVKLRQRKIAVGGDIGEMFHQIQIRKEDCPAQRFLWR
FT                 DKDDEEPSTYQLEVMMFGAVCSPYCAQFVKNLNAMEFQEDHPQAVKAIIHH
FT                 HYMDDWLQSFDTEDEAIALTRAVTEVHRRGGFQIGKWTSNSKSLLKVLGVD
FT                 TEASSTKDLAEWSEVPTERALGLHWIPGEDMFTFRVNLARAGIGVATGEVI
FT                 PTKRMVLRLVMLVWDPLGFLGHFLVKARILLQDLWKTKIGWDDQITSNQFK
FT                 KWKSWVSELPKLADVRIRRCYSSAASSSKDVTLHIFADSSEAASCSVAYIR
FT                 VVRPDDRVEVTLVMSKTRVAPVKPCSVPRLELTAALMASRLGKFLLSELDI
FT                 KIHGVFYWTDSMTVLRWIRSEARKFQQFVAVRVGEIQENTEISQWRWVPSX
FT                 ENPADDATRDGKADLRQESRWWNGPDFLKLXPEEFPVERVREKDVELDVLP
FT                 DLRREFVAVTVEAKEFGLPEVARFSKYLKLIRSTAYVLRFLEIVLKKDCTS
FT                 FLQTKRAELLQFRKSQWESFPQEMQQLTNGDSVYRNSRLFQLSPVLDHEGV
FT                 LRMKSRLSSSSKEGIRLPVILHPKAELTKLLLRFYHECHLHAGEDLVRNEV
FT                 RQRFWIPQLRSAVRKVIRECTVCRKRRANPLPPIMGAIPDFKIQPQPRPFF
FT                 NCGMDYFGPMEVTVGRRREKRYGVLFTCMNTRAVHLEVAASLTTDSCIMAI
FT                 RRLIARRGQPSQVFSDNGTNLRGAEKELRKALEELEAERMTGEMEAKGIHW
FT                 HFIPPTTPHMGGSWERLVRSVKKALSVILKCRAPKEEVLQTAFAEAEATVN
FT                 SRPLVDVPVDPESPEALTPFHFLIGTSSTQSVPGDFDPTRINLDKQWRQTQ
FT                 ALADMFWRRWVREYLPTLQRRAKWHKQHPSVEAGDIVIVLDESLKRNSWPL
FT                 GLVTQTFPGKDGVSRVAEIKTSSGIYRRPVVKLAKLDIKAAESKIKD"
XX
SQ   Sequence 5955 BP; 1648 A; 1366 C; 1700 G; 1239 T; 2 other;
     aagtggtcct tcgaggtttt tccttgacgc tccgtggact acagtcgata tttgaggacc        60
     agagtggtcc ttcgagataa ttccctgacg ctccgtggga atacagtcaa ttgagggcca       120
     tagtctttcc atttcctagg cgttccgcgg aaattcccgg tcagtcagga tggaggacga       180
     tcagagagtc ttcaaacaag aaggagaagg tcaagatcaa ttggatcaag acgaagagca       240
     agactttgat ggagtccgtc gtagcaggcg cccgaatcta gggattcctc caaacctttt       300
     cggggaatgg tttcatggaa ctccagctac ctcaagccag caacaaccag gaagtagcgc       360
     aacacaaccc tcaccacttg aattgtggag aatttctcaa cctaagtttc acagcacgtc       420
     aatttggtcg ccgggaggag cgggagtcac ctcacaagtc aaagctaagg aagaggaaga       480
     ccaacaatcc gctgcctccc atgcgacgtc tgtgtctgat attctggagc agatgcaggc       540
     gaatgacaag gagatggacg atgtgagaaa attggaggag tttgtgctac aaaaggcaga       600
     gaatctttct ctgcaaaact cgttgctgcg caagcagttg aaggaggagc aggagaggga       660
     agaaaggcgg aggatggagg atgttgccag ttacacctct gggagcgacc gctatgacga       720
     gacgacaaaa tcgtgggttc cgaaaatagg agctgctgtt acgctcgggg gtttgaagcc       780
     aacgccaaaa cccagaacac aaatatggaa ggcgccgtca aaggagccag tgggtcctca       840
     tgttcctgaa actccgaaga ggaaggagca gagggaggag cagacgaaga aagttgccca       900
     gttcacaccg ccgcctacgc caaaaccaag gagggtgaat tttgaagagc gacgtgcacc       960
     agggggaaga ccgccacaag cgttacctat ggcggaagca ccgactggga tggatgcact      1020
     cgccaatgcc attgtccagg ccctccagag ccaaaaccaa cagacagaga ggtttgttgc      1080
     gaggcagagt tcagctagta ctctgcctac cttcaccgga aatccactcg attggccgtt      1140
     gtttgcccac cattttaggc aatcaacgga ggattgcggt ttctcgccat cgcaaaatat      1200
     ggcgagactg gagaaggcac tgaagggaga agcaaggcga acggttcggt cactcatgat      1260
     cgtaccgacc aacacggagg cggttatgga aaggctggag caacggtttg ggagagcaga      1320
     atatgtcatt ggtgctctca ttgacattgc caagaagact ccgacaccga aggagagcaa      1380
     gctgtcatca tttctggact tctcaaacgc catccagaat ttggtgacaa cggtggagac      1440
     acttcaggtt cctgcttatc gagagaatcc gcagctgcta acggagctgg ttgacaaatt      1500
     gccagactct ttcaagatcc agtggggaat gcacaggata aggcttggca ccactggagc      1560
     aagtttattg gacttcgcag aatggatttc ggagatcgca gaagcagcta gtgtcgtaac      1620
     ggtcccgaaa ttatcctgga aggataagaa ggaagagagc agcttcgcgg cggaggaggt      1680
     gaagtcccag tcatcctcac caccggcggc taaaccgtgt ccatcatgca aaaaagaggg      1740
     tcacgggttg ccggcatgtg agagctttaa gaaaatggat ctcaaagcca agtgggactt      1800
     tgtgaagaaa agcaacgttt gcttcaggtg cctccggcct ggacattcca tcaggaactg      1860
     caagtcgaag tctagctgcc gggtggatgg atgtgacaga cgccaccaca cgttactcca      1920
     tgggtcaccg ccagccagtg atagccctga gaagtccaaa gacaaagaga cggacgaaaa      1980
     ggggaagaaa atggaggaga taaacgcgac gatggactcg ttttgtggag ccacgttgct      2040
     gcggattgtg gtcgtaacgc tatttggacc tgccggaaag ctgacggtga acgcgctgct      2100
     agatgagggt tcaaccgtta cccttatctc ctccaaggtg gcggatgaac ttggaattgc      2160
     tggagaagtg gatccgctcc gtattaagtg gacggacggc agaacgcagg aagataagtc      2220
     ttccaagaag gtggagtgtt ggattggacc agttgacgaa aagcagaggt acaagctgaa      2280
     gagggtgcgt accgtgaaga atctctctct cccggctcag agaacggacc tgagggaaat      2340
     tgtgaagcaa tatcctcatc tccagaagac aaagctaaag gtccttcctg gagagcgtcc      2400
     agtgattctt cttggccagc cacacatcca cctgacggta gcaagggagg tgattgaaaa      2460
     ggacgaagaa tcgcctatca tcaccaacac gaaacttggt tgggtcctgc acgggcctgc      2520
     acggggggaa gcagcagatg aatcatcttt tctgtgtcat cacgaaactg acgatgacat      2580
     tctccacaat ctggtcaagg agtcctttgc tctggagagc attggaatca agtcaagcgt      2640
     gtccactcgt tcaaaagagg acattgctgc agaagaaaag atgaagctgc ttacccgaag      2700
     aattccagat ggaagccgct gggagactgg acttttgtgg aggatggaca atccgcaact      2760
     tccgtacagc cgagatgtcg ctcaccgccg cctcttgagc attgagagga agctgcgcaa      2820
     aaaaccgcta attgcgcagc aatacagaga caagattggc cattacctgg aaaggggata      2880
     cgcaagaaag ctgactcggg aggaactgca agtaccaagt aaagtcgaat ggtaccttcc      2940
     tcattttgac acccaacatc caaacaaacc ggggaagatc cggatagttt ttgatgcagc      3000
     cagccgagcc aaaggagtca gtctcaatga ctacctgctg actggtccag atctgttggt      3060
     gtcccttcca ggcattttgg tcaagctgcg gcagcggaag attgcggtcg gtggtgacat      3120
     tggggagatg ttccaccaaa tacaaatacg gaaagaagat tgtccagccc agcgcttcct      3180
     ctggagagac aaggatgatg aggagccttc aacctaccag ttggaggtaa tgatgttcgg      3240
     ggcagtatgc tccccatact gcgcccaatt tgtgaagaac ctcaacgcca tggagttcca      3300
     ggaagaccac ccgcaagcag taaaagccat catccaccat cactacatgg atgattggct      3360
     ccagtctttt gatacggagg atgaagcaat agccttgacc agagcagtaa cggaagtaca      3420
     cagacgtgga ggcttccaaa ttggaaaatg gacaagcaac tccaagtcct tgctgaaggt      3480
     ccttggagtg gacacagagg cttcatccac aaaagacttg gcggagtggt cggaggtccc      3540
     aacggagagg gcgcttggac tccactggat tcctggagaa gatatgttta cttttcgagt      3600
     aaacctggcg cgtgctggaa ttggggttgc cactggagaa gtaattccca ccaagagaat      3660
     ggtcctacgt ctcgtgatgc tggtgtggga cccactggga ttccttggtc atttcctcgt      3720
     caaggccagg atattgctgc aggacctttg gaagactaaa attggctggg acgatcaaat      3780
     cacttccaat cagttcaaaa agtggaagtc atgggtctct gaactaccaa aactggctga      3840
     cgttaggatc agaagatgct attccagcgc agcgagctcc agcaaagacg tcacgcttca      3900
     catttttgcc gacagcagtg aagccgccag ctgttccgtg gcgtacattc gtgttgtgag      3960
     accagacgac agggtggagg tcacgcttgt gatgtccaaa acacgtgtgg ctccagtcaa      4020
     gccatgctca gtaccaaggc tggagctcac cgcggctctg atggcgtcaa gattgggaaa      4080
     gttcctgtta tctgagctgg acataaaaat acatggagta ttttactgga cggactccat      4140
     gacggtgctg cgatggatac gttctgaagc ccggaagttc cagcagtttg tggcggtgcg      4200
     agtgggtgaa atccaagaaa atacggagat ttcacaatgg agatgggtgc cgtcckcaga      4260
     gaatcccgcc gatgacgcga caagagatgg caaggcagac ctcaggcagg agtcacgatg      4320
     gtggaatggg ccagatttcc tcaagctgaa mccggaggaa tttccagttg aacgagtccg      4380
     agagaaagat gtggaactcg acgtgctgcc tgacctgagg agagaatttg tcgctgtcac      4440
     ggtggaggca aaggaatttg ggcttccaga agttgcaaga ttctccaaat acttaaagct      4500
     gatacgaagt acggcttatg tattaaggtt cctggagatc gtgctcaaga aagattgtac      4560
     gagtttcctg cagacgaaaa gggcggagct gctgcaattc cggaaaagcc agtgggagtc      4620
     atttccacag gagatgcagc agttgactaa tggggattcg gtgtacagaa acagccggct      4680
     cttccagtta tctccagtac ttgatcatga aggtgtgcta aggatgaagt ctcgtttgtc      4740
     atcctccagt aaagaaggaa tacgtcttcc agtcatcctt catcccaaag cagaactgac      4800
     caaattactg cttcggtttt atcatgaatg ccaccttcat gctggagagg acttggtcag      4860
     aaacgaagta cgccagcgtt tctggatccc tcaattaaga agtgcagtca ggaaagtgat      4920
     tcgggagtgc accgtctgca ggaagaggag ggctaaccca ctgccaccaa ttatgggagc      4980
     cattccagat ttcaagatcc agcctcagcc ccggccattc tttaattgtg gaatggacta      5040
     tttcggcccg atggaagtca cggttgggag aagacgagag aaacgctatg gggtcctgtt      5100
     cacttgcatg aacacaagag cggtccacct ggaggtagct gccagcctga caactgacag      5160
     ctgcataatg gcaattagaa gactgatcgc tcggagaggc caaccgtcac aagtcttcag      5220
     tgacaacggg accaacctgc gtggggccga gaaagagtta agaaaagcgc tggaggaact      5280
     ggaggcggag cggatgacag gagaaatgga agcaaaagga atccattggc acttcattcc      5340
     tccgacaacg ccacatatgg ggggaagctg ggagcggctg gtgaggtcag tcaagaaagc      5400
     gctctctgtc atcttgaagt gcagagctcc aaaagaagaa gtcctccaga ctgcatttgc      5460
     agaagcggaa gctactgtca acagcaggcc gcttgttgat gttccagtgg acccggagtc      5520
     tccagaggcg ctgacgccat ttcatttcct tattggaacc tcaagtacgc agtcggttcc      5580
     aggggatttt gatccaaccc gcattaattt ggacaagcag tggaggcaga cgcaagcatt      5640
     ggcagatatg ttctggagac gctgggtacg tgagtacctt cccactttgc agcgcagggc      5700
     aaagtggcat aagcagcatc catctgttga agcgggggac atcgtcatcg ttctggacga      5760
     gagcctgaaa aggaatagct ggccactggg acttgtaacg cagacatttc caggaaagga      5820
     tggcgtgtcc agggttgcgg aaatcaagac gagttccggc atttatagaa gacccgtggt      5880
     caagttggcg aagctggaca tcaaggcagc agaaagcaag attaaggatt gactgtcatc      5940
     aatcaggggg aagaa                                                       5955
//
ID   BEL-12_SiCu-LTR repbase;    DNA;    INV; 659 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-659
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5009-5009 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 659 BP; 181 A; 112 C; 110 G; 256 T; 0 other;
     tgttgctgcc aaattattca aatagtagtt taattttgtt tcgagtattg atttgttaaa        60
     tttgttcaat actaaattta aatcttggag tttttctttc actgctttct tttctccatg       120
     aaatgtaaat gtatttccgg taagaaagca ggattttatg ttatttgttt aattttccgt       180
     cttcatgaaa tttcatgaag aagttcgagt taatttcttt tgtatcatat tcttaaaatc       240
     tatttttaga acgattgtaa ctttaaaccg gaagcttaaa atatttttct gacattcctc       300
     ccggaagtcg ctctagtata aatagcggga ggaaactctg ttaatcatct tattcggtct       360
     tggacagcca gtcctaacag atctcttctt ttggcagtca gcctcaagaa accagttata       420
     cggtcatcac tggaaacagt tttgaccaag agttaacttg tgccgtcacc tgcaagttat       480
     ctattaataa agttctaagt atcaaagtac aattgtcgtt ttcgctttgg tatttattta       540
     ttggggattg cattactttg tctacagtaa gcatattcca tcattcatct ttttgttgcc       600
     cagtttttga taacgtccta tttacacgga cttttaactg agctacgaag ggggcaaca        659
//
ID   BEL-12_SpEx-I repbase;    DNA;    INV; 5567 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5567
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6881-6881 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..5526
FT                 /product="BEL-12_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTKKRQSLTPFESEELTINTVKDLVKKRGIIKSKFSL
FT                 FVKYVSSFENTDLNNAQRTELQIRLQKAEALLANFSEIQDEIDLIVSDSQL
FT                 EVELVERESFEDRYYTTVTSAKCLLSQDDSSPKSLSSKSSTYIKLPTIKLP
FT                 SFDGSYDQWLEFKDTYLSLIHASKDIDEIQKFHYLRSALTGNALQVIKSLE
FT                 FTAGNYCIAWDLLENRYNNSRLLMHNHLKALFAMQPINKESSAQIRKLIDN
FT                 ILRNLRALKILGEPTDSWDSIVIFFAASKLDASTEREWENYQGNLINNEAQ
FT                 GSSFSQKIKLDDFLKFLKNRADMLEMIRVSSNKPVDNNHKKALSNQVNNST
FT                 HSYVATQINKNYSNKTSKSSNRSRVCNLCNANHALYSCSKFLNLSVRDKSK
FT                 FVDEKKLCRNCLRVGHTEMNCWFGPCKQCNLKHNSLLHCDNKVSNDSLQAA
FT                 PREEPAVGSSQTAMLHSVAVKKRDNNSCISLTVQPVLLSTALVEVADCNNK
FT                 YHTIRALLDSGSQQCFVAESLCRTLNTKMLQSTVQVTGVGHCITQSTQSCE
FT                 IKLRSKVHNYKRSLKCLVLPQITAQLPSLNVNINFNIPDNVTLADPNFYSP
FT                 YEIQLLIGADLFWELLNEGLIRLPTGPCLQNTKLGWIISGPVQTKSLRINQ
FT                 IQCNFTQTLNVQLKKFWELEEITMPINNYSKDERACENLFSSTTLRDDKGR
FT                 FSVRIPLCESADSLGDTFTLAENRFRSLERKLARNPEYKKMYSAFLKEYLD
FT                 LGHMTRIHTYSFPTYFLPHHGVFRESSSTTKLRVVFDASAKSTSGKSLNDI
FT                 QLTGPILQNDIFSILLRFRRHRYIACADVEKMFRQVLIQPDQRNLQCILWR
FT                 ENPSDPLAIYQLNTVTYGTASAPYLSMRCIRQLADECNDDVISQVIKEDIY
FT                 VDDLITGHDDKNMLKFICDGVFRALSSGCFTLRKWVFNYDTSNINTINSSS
FT                 KEMSFGENCQNKTLGLGWFSASDDLHFITKLEDSNGTGITKRSILSIVSQI
FT                 YDPLGLLAPTVIIAKIILQKLWLCKIDWDDPIPQDIELSWKQFLTKLNNLH
FT                 TIRVPRYIMSDLSDNNKQVELHIFCDASQSAYGACAYIRAYIYNSSVNALS
FT                 IRLLCAKGKVAPIKPVSIPRLELCGALLGARLYNKIIKGIKINFSNVYLWS
FT                 DSTTVLGWLNITPSSLKPFVQNRVVEINELTEGCSWLHINGKQNPADLLSR
FT                 GVTIDTLQASDLWWHGPTCLREPNSKWEKGLTSVCRNIDFNELPELKSTTV
FT                 VMKCQVNTDLRLFDRFSSLNRLKRTMAYVLRFITNTRIKLKSNRALGTLSV
FT                 EELNNSMVVLSRLSQKESFPEEYKCLKNNLPIKSNRNLNGLNLFLDEYGLI
FT                 RVGGRIKNSLDFSFDKKHPVVLSSKHNFTLLLFRHEHFRLLHAGPQLLLST
FT                 LRENWWPIGGRQLARKITRKCVICTRIKGKTINAQMGNLPVERLESKFPFY
FT                 RCGVDYAGPLFILSRRGRGAKLEKCYICLFICFSTKAIHLELVTDLTTEAY
FT                 LLALKRFISRRGKPIEIFSDNGKNFVGAPKEFSTFLNNNSNSIINYTANEN
FT                 IKFSFIPPYAPHFGGLWEAGVKSCKHHLRRVVGNAHLTFEEFYTVLTLIES
FT                 ILNSRPLCALSSDPADALPLTPAHFLIGRPLTAAASDDLTATPTLRLSRYA
FT                 RVEQLRQHFWQRWTKEYITELQTRTKWKHKNQEIKPNTLVLIKEDNLPPLR
FT                 WRLGRVTSTFTGNDGISRVADVKTATGVIRRAYTKLCPLSTDGDDDDVCEA
FT                 S"
XX
SQ   Sequence 5567 BP; 1790 A; 1046 C; 1097 G; 1634 T; 0 other;
     tatggtcctt cgaagccgga tgtcatcagg aaaatcgtca ttgaagatca gcgcaattca        60
     aagtaaccat tgggaaagat aaggacgtct aggaagagaa gaaggagtga gagaacagaa       120
     gaaggtgggc gcggcatact cgccattcgt tgaaaaaacg gttacttttc aaactgtgag       180
     tactttcctt tgtctttcat agctaccgaa atgacgaaaa aacggcaatc ccttactcct       240
     tttgagtctg aagagcttac aattaacacg gttaaagatt tagttaaaaa gcgaggtata       300
     attaaaagta aattttcttt atttgttaaa tatgttagtt ctttcgaaaa tactgattta       360
     aataatgctc aacgaacaga attacaaatt cgtttgcaaa aagcggaagc attgttagcg       420
     aatttttcgg aaattcagga tgaaatagat cttattgtgt cagatagtca attggaggta       480
     gaattggtag aaagagaatc ctttgaagat cgatattata ctacagtgac tagtgccaaa       540
     tgtctgttaa gtcaagacga ctcttcacca aaatcattat cttctaaatc ttcaacttat       600
     ataaaactac ctacaattaa gctaccctct tttgatggct cgtatgatca gtggctagaa       660
     tttaaagaca catatttatc gcttattcat gcttctaaag atattgatga aatacaaaaa       720
     ttccattatt tgcgttctgc tctcactggt aatgccttgc aagtaattaa atcgctagag       780
     tttactgccg gaaattattg tattgcttgg gacttgcttg aaaatcgcta taacaatagt       840
     cgtctgctga tgcataacca tttaaaagcc ttgtttgcta tgcagccgat aaataaagag       900
     tcctctgctc aaataaggaa attaattgat aatattctga gaaatcttag agcgttaaaa       960
     atcttaggtg aacctacaga ctcctgggat tccattgtaa ttttctttgc ggcgtcaaag      1020
     ttagatgcgt ccacagaaag agaatgggag aattaccagg ggaatttaat caataacgaa      1080
     gcgcagggtt cttctttttc tcaaaaaata aaactagatg attttcttaa atttcttaaa      1140
     aatcgggcag acatgcttga aatgataagg gtatctagca ataaaccagt cgacaataat      1200
     cataaaaaag cgctttcgaa tcaagtcaat aatagcacgc acagttatgt tgctacacaa      1260
     ataaataaaa attatagtaa taaaacatca aaatcttcaa accggtctcg cgtttgtaac      1320
     ttgtgtaatg ctaatcacgc gctttattca tgtagcaagt tcttaaactt atcggtacgc      1380
     gataaatcaa aatttgtaga tgaaaagaaa ctttgccgca attgtttgcg ggtcggccat      1440
     actgaaatga actgttggtt tggaccctgt aaacaatgca acttaaaaca taactcatta      1500
     cttcattgtg ataataaagt gtccaatgac tcattgcaag cggcgccgcg agaggagcct      1560
     gctgtaggca gttctcagac cgcgatgctg cattcagtag cggttaaaaa acgagacaat      1620
     aacagctgta tctctttaac agtgcagcct gtcttgttat ccacagcgtt agtggaggtt      1680
     gccgactgca ataataaata ccacactatc cgcgcattac tcgatagtgg tagtcagcaa      1740
     tgtttcgtag ctgagtcttt atgcagaacg ttaaatacta aaatgttaca gtccactgtt      1800
     caagtcacag gtgtaggaca ttgcattaca cagtccacac aatcctgtga aattaaattg      1860
     aggtccaaag ttcacaatta taaaagaagt ttaaaatgtt tagttttgcc tcaaattacc      1920
     gcacagttac cctcactaaa cgtaaatatt aattttaaca tacccgataa tgtaacacta      1980
     gctgatccaa acttttattc gccttacgaa attcagcttc tcatcggtgc agacttattc      2040
     tgggaattgt taaatgaagg acttattaga ttacctactg gaccctgtct ccagaataca      2100
     aaactcgggt ggattatatc cggtccagtt caaacaaaga gtttgcgtat taatcaaatt      2160
     cagtgtaatt ttacacaaac acttaatgtg cagcttaaaa agttctggga gttagaagaa      2220
     atcacaatgc ccatcaataa ttattctaaa gacgaacgtg catgtgaaaa tttattttct      2280
     agtactacgt tacgcgatga taagggtcgg ttttctgtgc gcattccatt gtgcgagtca      2340
     gctgattcat taggagacac atttacgtta gcggagaacc ggttccgatc gcttgaacgt      2400
     aaactggccc gcaatcctga gtataaaaaa atgtattccg cgtttttgaa agaatattta      2460
     gacctgggtc atatgactcg catacataca tattcttttc caacttattt tttgccgcat      2520
     catggggtgt ttagggaaag tagtagtacc actaagctac gagtagtttt tgacgcgagt      2580
     gccaaatcta ctagtggcaa atctttaaac gatatccaat taacaggtcc tatattacaa      2640
     aatgatatat tttcaatctt attacgattt cggcgacacc gatacattgc ttgtgccgat      2700
     gtcgagaaaa tgtttaggca ggtactaata cagcctgacc aacgtaactt gcagtgtatt      2760
     ttgtggagag aaaacccttc agatccgctt gctatatatc agctcaacac ggtgacgtat      2820
     ggcactgcgt ccgcgccgta tctaagcatg cgttgcatta gacagcttgc tgacgaatgt      2880
     aacgatgacg tcatctcgca agttatcaaa gaagatattt acgtagacga tcttattacg      2940
     ggtcatgatg ataagaatat gttaaaattt atatgtgacg gtgtttttag agctttaagt      3000
     tcaggatgtt ttacattgcg taagtgggta tttaattatg atacttcaaa tataaataca      3060
     ataaatagtt cctcaaagga aatgtcattt ggagaaaact gtcaaaataa aacgttaggg      3120
     ttaggttggt ttagcgcgag cgatgaccta catttcataa caaaacttga agatagtaat      3180
     ggtactggca taactaaaag aagtatcttg tcaatagttt cacaaattta cgatccatta      3240
     ggtttattag caccgacagt cattattgca aaaattatat tacaaaaatt atggttgtgt      3300
     aaaattgatt gggacgatcc tattccacaa gatattgaac taagctggaa acaattcctt      3360
     actaaattaa ataatttaca tactatacgg gtccctcgtt atattatgag tgacttaagc      3420
     gataataaca aacaagttga gcttcatata ttttgcgacg cctcacagag cgcgtacggt      3480
     gcatgcgcat acatacgcgc ttatatatat aacagctcgg tcaatgcgtt atctatccgt      3540
     ctattgtgtg cgaaaggcaa agtagctccg ataaaaccgg ttagtattcc gcgcctcgag      3600
     ttgtgtggtg ccttgttggg tgcaagatta tacaataaaa taattaaggg aattaaaatt      3660
     aattttagca atgtttatct atggtcggac tcaacaacag tgttagggtg gttgaacata      3720
     acaccgagtt ctttaaaacc gtttgttcag aatagggtcg ttgaaattaa tgagcttact      3780
     gagggttgtt cttggttgca tataaatggt aaacaaaatc cagcagattt gctttcgcgc      3840
     ggtgttacta tagatacact acaagcatcc gatctgtggt ggcatggacc aacttgttta      3900
     cgtgaaccca actcgaagtg ggaaaaaggt ctcacgtcag tctgtcgtaa cattgatttc      3960
     aacgaacttc cagagcttaa atcaaccact gttgtcatga agtgtcaagt taacaccgac      4020
     ttaagattat ttgataggtt ttcttcttta aatcgtttaa aacgcacaat ggcgtatgtt      4080
     ttgcgattta ttacaaatac gcgaattaaa ttaaaatcaa atcgagctct tggaacgtta      4140
     tcagttgagg aactaaacaa ttcaatggtg gtgttatcta gactgtcaca aaaagaatct      4200
     ttcccggagg aatataagtg tttaaaaaat aatttaccaa taaaatccaa ccgtaactta      4260
     aacggtctga atttattctt agatgaatac gggcttataa gagtaggcgg tagaattaaa      4320
     aactcccttg atttctcttt tgataagaaa catccagtgg tattgtctag taaacataat      4380
     ttcacattat tactatttag acacgagcac ttccgtttat tgcacgccgg tcctcaacta      4440
     ttactgtcca ctttacgaga aaattggtgg ccgataggtg gtaggcagtt agctaggaag      4500
     ataactcgta aatgtgttat ctgtacccgc ataaagggca aaacaataaa tgctcagatg      4560
     ggcaacttac cagtggagag attagaatcg aaatttccat tctatcgttg tggcgtggac      4620
     tacgccggac cactgttcat actaagccgt agaggaagag gagctaaatt agaaaaatgt      4680
     tatatttgtt tgtttatatg tttttcaaca aaggccattc atctggaact agtcactgat      4740
     cttactacag aagcctactt actcgcttta aaaagattca tatcgagacg tggtaagcct      4800
     atagagattt tctccgataa tgggaaaaac tttgtaggag ccccaaagga atttagtaca      4860
     ttccttaata ataactcgaa ttctattatc aattacacag ctaatgaaaa tattaagttc      4920
     tcattcattc cgccgtacgc acctcatttc ggtggtttgt gggaggcagg ggtaaagtct      4980
     tgcaaacacc atctccgtcg agtggtgggt aatgcacatt taaccttcga agagttctat      5040
     acagtattaa cattgattga atccatactg aattcacgtc ctctatgcgc cttgtcatct      5100
     gatcccgccg acgcactgcc actgacgcca gcacatttcc tcatcggacg tccacttaca      5160
     gcggcagcct ctgatgacct gacagctaca cctacactta gactgtcacg ttacgcgaga      5220
     gtggagcaac tgagacagca tttctggcag agatggacca aagaatatat taccgaactc      5280
     caaacgagaa ctaaatggaa acataagaat caagaaatca aacctaatac cctcgttctc      5340
     atcaaagaag acaatttgcc accgcttaga tggcgcctcg gcagagtcac cagcaccttc      5400
     actgggaacg acggcatctc aagagtcgca gacgtcaaaa cagcgacggg ggtaatcaga      5460
     cgagcttaca caaagttatg ccccttatca accgacggtg atgatgacga tgtctgtgaa      5520
     gcttcgtaaa acttcattgg aagcgggtgc ttccaaggcg ggggcta                    5567
//
ID   BEL-12_SpEx-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6920-6920 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 300 BP; 101 A; 68 C; 60 G; 71 T; 0 other;
     tgttcacgcg cctatatact gcgtgagtca catacatgat gggcgaacgc ggggaagaca        60
     agcacgcggg cggcggggag tatgggtgca ccgcgcgaca ccccacgacc gaccacggca       120
     ctgcatcgaa agcgcgtcgc tagctagacg tattacctaa tttaacttta tttaatattg       180
     taaagaaatt taataaaatt aaatgtattt aatcctacaa caaagaaaaa ctaataattg       240
     aagagtcctt gtcgaagttt cttaccctat aaatcttaca caatcaaaca ttaaccaaca       300
//
ID   BEL-12_TrNi-I repbase;    DNA;    INV; 5519 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5519
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1019-1019 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..5411
FT                 /product="BEL-12_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MANSVEQLLNVLEDTAMLLAKTQLNLKKCPKQRLTKG
FT                 YIEARIKNIEEYWSTYKSAHVELVKCVPKPKRQDIPYFVNEEYFVQEDLYT
FT                 CLLADLNDLLSGLSNTTSLPVSMQAARNNSVSMDIQVKLPRIQLPTFSGIY
FT                 DEWPAYQDLYTSLVHDNPTLSKVQKLHYLKSSLTGEALSLLKHVQVTEDNY
FT                 NDAFAMLKARFGNKRIIANSILKRLFTQKKITSQTASNIKAILDTTTECLN
FT                 ALTNLKLSTSSLDPLAHSLIVFLVVHKLDPETHREWEEVAYDATNDELPKW
FT                 DALSKFLQSKFRTLELITSASKEKPSSRGKEYAVHVSTSSTSKPRCCVMCE
FT                 KDHTLCHCEEFIKLSPAERCEYLKQNKLCYNCLAPGHSAYKCRLRMFCRKC
FT                 HKRHHTLTHQSIPMTSPNQPDNMNQQDKFETHQDSAKPNETNVTISSHVAA
FT                 NLSTALLATALVPVRKPETGQVTVLRALIDHGSQATFMSERAAQLLRVRRT
FT                 PINGTITGVGSTKTNVKHAAEIELLSRHDACFNLKVKTYIMSTRLTTELPS
FT                 QTISINTWPHLQGLALADPSFNKSGRVDLLLGVDVCAQIMKGEVIKGPPGT
FT                 PCAQNTTLGWILFGNVEYNLPEREIIVMHLNIDLNDMLKRMWEQDPYDQRQ
FT                 PTAEERRCEEIYAITTTRNKDGRYIVTLPKKSNVLLSKDGNTRAIALKRLY
FT                 QLEQRFKNNPKLKSDYVTVMKEYQANYMETVPEEEITNPSVYLPHHAVIKE
FT                 GRETTKLRTVFNASQKGTNNTSLNDELMVGPQLQDDMRSLIMRWRMKKVCF
FT                 VADIQKMYLQILVKKEDRDLQRILWRNDDQEPVRDYRLTRVTFGTASAPYL
FT                 AVKTLHQIAKDEGQKYPEASEIIRRDYYMDDMMSGKDNVQDALKVAKEIDT
FT                 ILKKGGFQLKKWCSNDINFLKEFEESERSSHVKLDLSLDGITRALGLQWNM
FT                 GNDRFQYSLNLPGTSNITTKRTILADLQRLFDPLGWLAPSILPAKLLIQRL
FT                 WLQGISWDEEVEETIATEWNNLRESFRLYLPCIEIDRWLHTTETNNNNISI
FT                 HGFCDASTKAYAAVAYLRVRTPTGSVKTSIIAAKTKVAPTKSQSLPRLELS
FT                 GAVLLAGLLKRIKEAMNIPTCQIFAWTDSTIVLSWLFGDPARWNTYVRNRV
FT                 IEILDNIGNHNWYHVKSSENPADAASRGTSLSDLKSDELWWRGPVWLREGE
FT                 IQYSRPNMMMTDLEKREIILVNLTLDTGKSIIRKFEDCDTLQELLTVVVYC
FT                 KRFLKGRKLEIKDLPLNTEELDDALKTCLRIAQKNDFEDEIQNLKSKTQIK
FT                 GKSKLTNLNPYLDDVGLLRVGGRLRHSDLSEDSKHPIILDRHNGLTNLLVT
FT                 DAHRQTLHGGVQIMLCFLRTKYWILKAKTLVKAKIRKCLICAKLNATAKSQ
FT                 QMGDLPRVRVTPAKPFWNTGVDFAGPYPVLMSRGRGAKTHKAYIAVFVCMS
FT                 TKAIHLELVGDLTSDTFIAAFRRFVARRGRCAQIWSDQGRNFVGANRQLVA
FT                 DWTEAKLQFEGSIAETLAKDGTKWHFIPAYSPHMGGLWEAGVKAMKHHLKR
FT                 IMTHNMTYEEMSTLLCQIEACLNSRPLTMIDDTDKDRLQPLTPGHFLVGET
FT                 PITVPTPNLRDVPMSHLSRWQHQQRLLTDFWHRWQQEYLTTLQQRSKWHHK
FT                 VKELDLGHIVLIRSDNLPPGKWMMGRIVEKHPGADGVTRVYSVKSGDSVVQ
FT                 RSFNKLCYLPIDTEC"
XX
SQ   Sequence 5519 BP; 1899 A; 1143 C; 1147 G; 1330 T; 0 other;
     tatggtccaa acgagccgga tatcttcgtg cgacttacga cgttcaagca ccgaacgcaa        60
     aacaagaggc aatcgaacgt cgaacaattt tcgaaaaaaa aagaatttag tgaaaaaata       120
     caatttaaat taaataaata taaaattggt gtaataagtt ttaaaacgtt ctgcttttaa       180
     cgaaaagaag gcgtattgca acaaatatgg caaattcagt ggaacaattg ttaaatgtgt       240
     tagaagatac ggctatgtta ttagcaaaaa cccaattaaa tctcaagaaa tgtccgaaac       300
     aacgcttaac aaagggatac atcgaagctc gtattaagaa cattgaagaa tattggtcta       360
     cgtataaaag cgcacatgtg gaactagtga aatgtgttcc taaaccaaaa cgacaggaca       420
     ttccatactt tgttaatgaa gaatactttg tgcaggaaga cttatatact tgtttactag       480
     ccgatctgaa tgacttattg agtggtttat caaacaccac gtcgttgccc gtttctatgc       540
     aagctgcccg taacaacagt gtttctatgg atatacaagt caaattaccg agaattcaac       600
     taccaacttt ctcaggtatt tacgatgagt ggcccgctta tcaggatctt tatacatcat       660
     tagttcatga caatccaaca ttgagtaaag tacaaaagtt acattatttg aaaagtagtc       720
     taacgggaga agccctgtcg ctattgaagc acgtgcaagt taccgaggat aactacaacg       780
     acgcatttgc tatgctaaag gcacgttttg gtaacaaacg cattattgcc aactcaatat       840
     tgaaacgatt gtttacacaa aagaagataa cctcgcaaac ggctagtaac atcaaagcga       900
     tattggatac gacgactgaa tgtctgaacg cactgacaaa cctaaaactg tcaaccagct       960
     cactggatcc actcgcacac tctctcattg tatttttagt cgttcataaa ttggatccag      1020
     agacgcatcg tgaatgggaa gaagttgcgt atgatgccac taacgacgag ttacctaaat      1080
     gggacgcatt gagcaagttt ctacagtcaa agttccgcac gctcgagctt attacatctg      1140
     caagtaaaga aaagccttca tctagaggaa aagaatacgc tgtgcacgtg tctacgtcaa      1200
     gtacatcaaa accgagatgc tgcgttatgt gtgaaaagga tcacacgtta tgccattgtg      1260
     aggagttcat aaaactgagt ccagcagaga gatgtgagta cctaaaacaa aacaaactat      1320
     gctacaattg tctggcccca ggacattccg catacaaatg tcgcctgcgg atgttctgcc      1380
     gaaaatgtca caaacgtcat cacacgctca cgcatcaatc aataccaatg acgtcaccaa      1440
     atcaaccaga caacatgaat caacaagaca agtttgaaac ccatcaagat tctgcaaaac      1500
     caaatgaaac caacgttacc atttcatcgc atgtcgctgc taatttgtct actgcattgc      1560
     tggccacagc tcttgtacca gtacgaaaac ctgagacggg acaagtgaca gtgcttcgtg      1620
     ctttgattga ccacggctcc caagcaacgt tcatgagcga aagagcggcc cagctgttaa      1680
     gagtgagaag aacgcctatc aacggcacca tcactggcgt cggctcaacc aaaacaaatg      1740
     tcaaacatgc tgcagaaatc gaactactat ccagacacga cgcttgtttc aacctcaaag      1800
     taaaaacata cattatgtcg acgagactca ctactgaatt gccgtcacaa accatctcca      1860
     tcaacacctg gccgcatctg cagggacttg cactcgccga tccaagtttc aataaatcag      1920
     ggcgagtaga tttattactg ggtgttgacg tatgtgccca aatcatgaag ggtgaagtta      1980
     tcaagggccc cccaggaaca ccatgtgctc aaaacactac tctgggttgg atcctatttg      2040
     ggaacgtaga gtacaaccta ccagaaagag agattatcgt tatgcacctc aacattgatc      2100
     taaatgatat gctgaaacga atgtgggaac aagacccata tgaccaaaga caacccactg      2160
     ctgaggaacg aaggtgcgaa gagatctatg cgatcacaac cacgagaaat aaagacggaa      2220
     ggtacatagt aaccttacca aagaaatcca acgtgctatt atctaaagat ggaaatacaa      2280
     gagcaatagc cttaaagaga ttataccaat tagaacaaag attcaagaat aacccaaaac      2340
     ttaaaagtga ctatgttaca gtcatgaaag aataccaagc aaattacatg gaaacagtac      2400
     cagaagaaga aatcaccaat ccgtcggtat acttacctca tcacgccgtg attaaagaag      2460
     gaagggagac aaccaaatta agaactgttt ttaacgcatc tcaaaaagga acaaataata      2520
     catccctcaa tgacgaactg atggttggac cacagttaca agatgacatg agaagtctga      2580
     tcatgcgatg gcgcatgaag aaggtttgtt tcgtagctga tatacaaaaa atgtacctgc      2640
     agatccttgt caagaaagaa gaccgagatc tgcaacgaat tctgtggagg aacgatgatc      2700
     aagaacctgt cagggactac cgtcttacca gagtcacctt tggaactgct tctgctccat      2760
     acctggcagt aaagactttg catcaaatag ccaaagatga aggacagaag taccctgaag      2820
     cttcggaaat aataagacgc gactattaca tggatgacat gatgtcagga aaagacaatg      2880
     tacaagacgc attgaaggtg gccaaggaaa tagacaccat actcaagaaa ggcgggttcc      2940
     aattaaaaaa atggtgttcg aatgatatta attttcttaa agagttcgaa gaatccgaaa      3000
     gaagctctca tgtgaagcta gacttaagct tagatggtat aacacgagct ctgggattac      3060
     aatggaacat gggtaatgac cgttttcagt acagcctcaa cttacctggt acgtcaaaca      3120
     ttactacaaa gagaacaatt ctagccgatc tacaaagatt atttgatcca ctaggctggc      3180
     tggctccatc tattttgcca gcaaaactcc taattcaaag attatggctt caaggaatat      3240
     catgggatga agaagtagag gaaaccatag ccacggaatg gaataattta cgagaatcat      3300
     ttcgtctata cttaccttgt atcgagatag atagatggct acacactact gaaactaaca      3360
     acaataacat cagtattcac ggcttctgtg atgcgtccac gaaagcttat gctgcagtag      3420
     cctatctaag agtacggaca cccacgggta gcgtaaagac ctcaataatc gctgctaaaa      3480
     ccaaagtagc accgactaaa tcacaatcct tacctcgtct agaactgagt ggtgctgtac      3540
     tgcttgccgg actcttaaag cgcataaagg aagctatgaa tataccaacc tgtcagatat      3600
     tcgcttggac cgactccact attgtacttt cctggctatt cggtgaccct gctagatgga      3660
     atacgtatgt tagaaacaga gtaattgaaa tactagacaa catcggaaat cacaattggt      3720
     atcacgtcaa atcatcagaa aatccagctg atgccgcttc tcgaggaaca tctctgtcag      3780
     atctaaagag tgacgaacta tggtggagag gcccagtctg gctaagagaa ggggaaatac      3840
     aatacagcag accaaatatg atgatgacag acctggaaaa aagggaaata atattagtaa      3900
     acctaacttt ggacactgga aaaagtataa ttagaaaatt tgaagattgt gatacattac      3960
     aagagctact cacggtagta gtgtactgca aaagattctt aaaaggaagg aaattagaaa      4020
     tcaaagactt acctttaaac acggaagaac tagatgatgc gttgaaaact tgtttaagaa      4080
     tagcacagaa gaatgacttt gaagacgaaa tacaaaatct gaaatcaaaa acacaaatta      4140
     aaggaaaaag taaattaacc aatttaaatc cttaccttga tgatgttggc ctcctcaggg      4200
     tgggcggaag actgcgtcac tctgatctaa gtgaagatag taaacatccg attattcttg      4260
     atcgccataa tggtcttacc aatctcctcg tcaccgatgc tcaccgtcaa acgctgcacg      4320
     gcggagtgca aataatgctc tgcttcttaa gaactaaata ctggattctg aaagcaaaga      4380
     cattagttaa agcaaagatc agaaaatgtc taatttgtgc taaactgaac gctacagcaa      4440
     agtcacagca aatgggagat ttacctagag ttcgggtaac accggcgaag cctttctgga      4500
     ataccggcgt tgactttgca ggcccatatc cagtcttgat gtcgagaggc aggggagcaa      4560
     aaacacacaa ggcgtacatc gctgtctttg tctgtatgtc gacaaaggcg attcatctcg      4620
     aattggtggg agatctcaca tcagatacct tcatcgcagc tttccgaaga tttgtagcaa      4680
     gacggggaag atgcgctcag atatggagcg accaaggccg caatttcgtc ggagcaaaca      4740
     ggcagctggt cgcagattgg actgaagcca agttacaatt cgaaggttca atcgctgaga      4800
     cgctagctaa agatggcaca aagtggcact ttatcccagc ctatagtcct cacatgggcg      4860
     gactatggga ggctggtgtg aaagcgatga aacatcatct aaaacgaatc atgacccaca      4920
     atatgaccta cgaagagatg agcacgttgt tgtgtcagat tgaggcgtgt ctcaactcac      4980
     gaccgttaac tatgatagat gatacagaca aggatcgcct gcaaccacta acacctggtc      5040
     acttccttgt cggtgaaaca ccaataactg taccgacacc aaacctccga gatgtcccga      5100
     tgagtcattt atcaagatgg cagcatcaac aaagattatt aactgacttc tggcacagat      5160
     ggcaacaaga atatctgaca acattgcaac aacgttccaa atggcaccat aaagtcaagg      5220
     agctggactt aggacacatt gttctaataa ggtcagataa tctacctccg ggtaaatgga      5280
     tgatgggccg tattgttgag aaacacccgg gtgctgacgg tgtcactcgg gtatactcag      5340
     taaaaagtgg tgatagtgta gtgcagaggt catttaataa gttgtgttac ttaccaatag      5400
     acacggaatg ttgatttaat tttgtattta ataactattc atagtattaa gttttaattt      5460
     cttttatatc tgaaatagga acatttttga aagggctata taccctttgg tgggcggta       5519
//
ID   BEL-12_TrNi-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-12_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-193
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1047-1047 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 193 BP; 69 A; 30 C; 27 G; 67 T; 0 other;
     tgttgtgtta gaacctatgt tgtgttaaaa ctccttttta tgtatataac ctgcatggtg        60
     tcattataat attaaatata aattcttaaa tgtcagtagt aagtcagtag caaataaaac       120
     agtattgagg aatcacgtct ttctattacc atcgaactcc tacaagcaaa tctgaacttt       180
     aaaatctaga aca                                                          193
//
ID   BEL-130_AA-I repbase;    DNA;    INV; 6169 BP.
XX
AC   supercont1.259;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-130_AA_;
KW   BEL-130_AA-LTR; BEL-130_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6169
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.259; Positions 1321591 1327759.
XX
CC   Positions [5196-5753] - Integrase core
CC   'CTTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..6167
FT                 /product="BEL-130_AA-I_1p"
FT                 /translation="MPETDRFDCQMCDLANNIDDMVQCEGCSKWSHYGCVG
FT                 FDDGKKEEHWKCHKCANSSSIGEAHGNSSAQVSGGQQQINVPLRGGDSISE
FT                 LARLNLELLEERKAFLMKEIEMQQAAQLEQRKLQLEKEAWKVRYDIVNARS
FT                 DATNGEGNTGGLGDWITRLNQVAVSQNQQISAPASTVTVPTTISGTRPLHQ
FT                 ATGGMLSAMQTTTSLFGCDLGHVSQPAPSGISTQANLQTSHQATSTHPMGQ
FT                 ATSFMHDFQPGGEANRPGSSTPITTANWVNPVMGPTSSTQCLPQSISSVGQ
FT                 FASYPMQSGYVSQPYQVTSSISNYVPVGQVACSQYANCSVGPVYPQINTIN
FT                 AHSSYAPFPLPMSLPNSNPHISQAPSAAQNVSTSHIDQSAPTSRQLAARHV
FT                 MPKELPLFSGNPEEWPMFYSAFNTSTEACGYSNVENLGRLQRCLKGGALEA
FT                 VRSRLLLPTSVPQVMQTLQMLYGRPEQIIYALLQKVREVPAPKADNLCTIV
FT                 AFGMAVQNFCEHLEAAGQVLHLSNPVLLQELVDKLPANLKLEWVTFKRQFL
FT                 AVDLRVFSRYMANLVSAAAEVTLTLDPRGAKPKKDEKQKGFVNAHATSTGA
FT                 ASPEKPKGQYAKAASSIACLICGDQEHRVKECEVFKKMDRDDRWKAIHNHF
FT                 LCRICLGKHGRKPCRSSARCNVQGCQLRHHPLLHSDSERPPTAVKPTPQGN
FT                 ETVPRRNPTEGVNAHHTQSSTLFRMIPVRLFSKGRSVETLAFIDEGSSVTL
FT                 LEKSIADALQAEGTEMRLCLTWTSNISREEEGSHQVEVDISSIGGGKRYPL
FT                 KDVRTVESLALPVQTLRYKELADRFEHLRKLPVTDFESRAPGLLIGAKNTH
FT                 ITATQQLREGREGEPIAAKTRLGWAIYGSMPNGSNIASCNLHICGCDFDKT
FT                 LHELVKQYFTVENVGVSVDRSPDSDENKRARALLEKTTRRIEGGFETGLLW
FT                 RQDIVEFPDNYAMAVRRLRCLERRFNTNPALFEKVQRQIEQYQKKGYIHEA
FT                 AEDELAATDPRRLWYLPVGIVQNPKKPNKIRIVWDAAATVDGISLNSMLLK
FT                 GPDLVQPLPEVLCGFRERKIAVVGDIMEMFHQLKIRRDDRYSQLFLWPSES
FT                 GKTPRTFVIDVATFGSTSSPCSAQFVKNLNATEHAVEYPRAAEAIVRRHYV
FT                 DDYLDSFDSEDEACQVVEEVKLVHQRGGFTIRNWLSNSATVLQRVGETDAG
FT                 TIKIVSDGGSQIERVLGMQWKAAEDVLVFSSEVDVETVVPTKRGILRCVMS
FT                 QFDPLGLLSHFLIHGRVIIQDIWRTKAGWDDTVDEQILERWRSWTAKFKEL
FT                 EEVRVPRAYFPGVRASDIKDLQLHVFVDGSETAYACVAYFRATIHGEFRCA
FT                 LVGGKAKVAPLKTLSIPRLELQAALIGCRLMKTLCHSHSLPISKRVFWTDS
FT                 KTVLSWIHSDHRRYRQFVACRIGEILSKSDPIEWRYVPSKVNVADDGTKWT
FT                 SQGASGPNLKADSRWFKGPEFLWKHEESWPLQAQPEATNVEARPCHVHLTT
FT                 ENRELFLEWNRFSKFERLRRTVAYIYRFVDNCRRKKMKHPLQNSHVTHEEL
FT                 TKAENALWRLVQADTFPEEVSQLQKAKKGLKLKVNRASPIYKLSPFIDECG
FT                 VVRMDTRISGAIFLPFDTKFPIILPKGHRLTRMVVEWYHRYYLHANNETVI
FT                 NEVRQRFHVPCLRALVRNLSRSCVQCRISKAKPLCPREAPLPEARLSPYIR
FT                 PFSFVGLDYFGPIQVKVGRSLVKRWVALFTCLTIRAVHLEVVHSLSTEACK
FT                 MAIRRFIVRRGSPLEIRSDNGTNFQGASHELQQQIRDMNQQLSAVFTNAAT
FT                 KWVFNPPSAPHMGGSWERLVRSIKVAFSALTTSRNPDDETLLTLMIEAEGI
FT                 VNSRPLTNVPLETDTQAALTPNHFLLLSSQGVTQPPMTIPERPESLRTNWR
FT                 LTTNLVNQFWNRWVREYLPTIAGRTKWHEDAKEPNVGDLAVIVDPSVRNGW
FT                 LRGRILSVVKGRDGRCRQVLVKTSGGVLRRPVTKVAILDIKAANNDEGQGN
FT                 AVPSEALDVHYGSG"
XX
SQ   Sequence 6169 BP; 1640 A; 1554 C; 1681 G; 1294 T; 0 other;
     caaactcaaa gatttgttga gaaccacgtc ggaacgggat atacaggatg ccggagaccg        60
     atcgcttcga ctgccagatg tgcgatctgg ccaacaacat cgacgacatg gtgcagtgcg       120
     aagggtgcag caagtggtca cactacggct gcgtcggctt cgatgatggc aagaaggagg       180
     aacactggaa gtgccataaa tgtgccaact cttcgtctat cggcgaagcc cacggaaact       240
     ccagtgctca agtcagtggc ggacagcagc agataaacgt tcctctccgg ggaggggact       300
     cgatcagtga gctcgctcga cttaacctcg aattgctaga ggaacggaag gcctttctga       360
     tgaaggagat cgagatgcag caagcggccc agctggaaca gcgaaaactg cagttggaga       420
     aggaggcatg gaaggtacgc tacgacattg taaacgcaag gagtgatgca accaatggtg       480
     aagggaacac cggtggtctt ggagactgga ttactcgatt gaaccaggtc gctgtcagcc       540
     agaatcagca aatttctgcg ccggccagta cggtgacggt tccgactacg atttccggga       600
     caaggccgct gcatcaagcc actggaggaa tgctatcagc catgcaaaca accacgtcgc       660
     tcttcggctg cgacttaggt cacgtttccc agccagctcc cagtggtatt tcgacacaag       720
     caaacctgca aacaagccat caagctacaa gcactcatcc gatgggacaa gctaccagtt       780
     tcatgcacga tttccagcct ggaggagaag caaaccgtcc gggatcgtcg acaccgatca       840
     ccacagcgaa ttgggtcaat cctgtgatgg gtcccaccag ctctacccag tgtctgccac       900
     agtcgatcag ctcagtcgga cagtttgcca gctacccgat gcaatcgggt tacgtaagcc       960
     aaccatacca ggtaacaagt agcataagca attacgtacc agtaggtcag gtagcttgtt      1020
     cgcagtatgc aaactgtagc gtagggccag tctatccgca aatcaataca ataaatgcac      1080
     actcgtccta cgctcccttc cccctcccga tgagccttcc caattccaac ccacacattt      1140
     ctcaagcacc atccgctgct caaaatgttt ccacgtcgca tatcgatcaa tcagcaccta      1200
     cttctcgtca actcgcggcg cgccacgtta tgccgaaaga actaccgttg ttcagtggca      1260
     atccggaaga gtggcccatg ttttacagtg cgtttaacac ctccacggaa gcatgcggct      1320
     acagcaatgt ggaaaatctc ggaagactcc agcgttgctt gaagggcggt gctttggaag      1380
     cagttcgcag ccggttgctg ttacctacgt ccgtgccgca agtgatgcag acgctgcaga      1440
     tgctgtatgg acgaccggag caaattattt acgcgctgct ccagaaggtg cgagaagttc      1500
     cggccccgaa ggcggataat ttgtgtacga tagtggcctt tggtatggca gtgcagaatt      1560
     tctgtgagca tttagaggcc gcaggacaag tgctacacct atcaaacccg gtgctactcc      1620
     aagagcttgt ggataagctc ccagcgaact tgaagctcga gtgggtaacg ttcaagcgcc      1680
     agtttttggc cgtagatctc cgtgtgttta gtcggtacat ggcgaatctg gtgtcggcag      1740
     cagctgaagt caccctcacg ttggacccga ggggggcaaa gccgaagaag gacgagaagc      1800
     aaaaggggtt cgtcaacgcc cacgctactt caaccggtgc agcttcgcct gagaagccaa      1860
     aaggacagta tgcaaaggca gcttcatcga ttgcatgttt gatctgtggg gatcaggagc      1920
     atcgagtgaa ggagtgcgaa gtcttcaaga agatggatcg cgacgatcgt tggaaagcca      1980
     ttcacaatca ttttctttgc cggatctgcc taggaaagca tggaaggaag ccgtgtcgat      2040
     cgtcagcgcg ttgtaatgtg caagggtgcc aacttcgtca tcatccgctc ctgcacagcg      2100
     attcggaacg tccgccaacc gcagtcaagc cgacaccaca aggaaatgag acagtgccac      2160
     gaagaaatcc caccgaaggc gtgaacgctc atcacaccca gagctctacg cttttccgca      2220
     tgataccagt gcgactcttc agtaagggac gaagcgtaga aaccctagcg ttcatcgatg      2280
     aaggctcatc cgtaacgctc cttgaaaaga gcatagccga tgctctacag gccgaaggaa      2340
     cggaaatgcg tctttgcctg acctggacga gcaatatcag tcgcgaagaa gaaggttcac      2400
     atcaggtgga ggtggatatt tctagcatcg gaggcggtaa aagatatccg ctcaaagacg      2460
     tcagaaccgt agaatctctg gcattaccgg ttcaaacact gcgctacaaa gagctcgctg      2520
     atcgttttga gcatctacgg aagttgccgg tcacggattt cgaatccaga gctcctggat      2580
     tactaattgg agcaaagaat acccatatca ccgccactca acaactacga gaaggacgag      2640
     aaggagagcc tatagcggcg aagactcgtc tcggatgggc aatctacgga tcaatgccga      2700
     atgggtcgaa catcgcgagt tgtaacttgc acatctgtgg ttgcgacttc gacaaaacac      2760
     tgcacgaact agtgaagcaa tacttcacgg tggaaaatgt aggagtttcg gtggatcgga      2820
     gtcctgattc ggacgaaaac aagcgggcca gagcattact cgagaagacg actagacgaa      2880
     tcgaaggcgg tttcgagacc gggttgctgt ggcgccaaga catcgtggag tttcccgata      2940
     actatgctat ggcagtgaga aggctacggt gtctggaaag gcgcttcaac acgaatccag      3000
     ccctattcga gaaagtacaa cgtcagatag agcagtacca aaagaaaggg tacatccacg      3060
     aggccgcgga ggatgagttg gccgccaccg acccaagaag attgtggtac ctcccagtcg      3120
     gaatagtaca aaacccgaag aagccaaaca agatccgaat cgtgtgggat gcggcagcaa      3180
     cagtagacgg catttccttg aacagcatgc tgcttaaagg tccggattta gtgcaaccac      3240
     tcccggaagt gctctgtgga tttcgggaac ggaagatcgc cgtagtgggg gacatcatgg      3300
     aaatgttcca tcagctcaag atccgacggg atgaccgata cagccaacta tttctttggc      3360
     caagtgaaag cgggaaaact ccaaggacct ttgtaatcga cgtagcgacg ttcggctcaa      3420
     caagctcacc atgttcggcg cagtttgtaa agaacctgaa tgcgaccgaa cacgcagtgg      3480
     agtacccaag ggcagcggag gcaatcgtgc gtcgacacta tgtcgacgat tacctggata      3540
     gctttgacag cgaggatgaa gcatgtcagg tggtagagga ggtcaaactg gtgcaccagc      3600
     gaggcggatt cactattcgc aactggctct caaactcggc tacagttctg caacgggtcg      3660
     gggaaaccga tgccggtacg ataaagatcg tgagcgatgg tggttctcaa atagagcgcg      3720
     tgctgggcat gcagtggaag gcagccgagg atgttctcgt attctccagt gaggtcgacg      3780
     ttgaaacagt agttcccacc aaaagaggca tcctgcgatg tgtaatgagc cagttcgatc      3840
     cgttgggact tctttcgcac ttcctgatcc atggccgagt tattatccag gacatctggc      3900
     gtacgaaagc tggttgggac gatacggtag acgagcagat tctggagcga tggcgttcat      3960
     ggaccgcgaa attcaaagag ctggaagaag tgcgagtacc gcgcgcctat tttccgggtg      4020
     tgagggcatc cgacattaag gacctgcaac tccacgtctt cgtcgatggt agcgagactg      4080
     cctatgcgtg cgtcgcctat ttcagggcaa ctattcacgg agagtttcgc tgcgcactcg      4140
     tcggagggaa agcaaaagta gcaccgctga aaacgctctc cattccacgg ttggagcttc      4200
     aggcggcgtt aataggctgt aggctaatga aaacactctg ccatagccac agtctaccga      4260
     tatcgaaacg agtattttgg accgattcga aaacagtcct ctcttggatt cactccgatc      4320
     atcggcgcta tcggcaattc gttgcctgta ggataggcga aattctctct aaatccgatc      4380
     caatagaatg gcgctatgtt ccgtcgaaag ttaatgtggc cgatgatgga acaaagtgga      4440
     ctagccaagg ggctagtggc ccgaacctga aagccgacag ccgttggttc aaagggccgg      4500
     agttcctatg gaaacatgaa gaatcctggc cacttcaggc tcaaccagaa gccacaaacg      4560
     tcgaggctag gccctgccat gttcacctta caacagagaa cagggaactg tttctcgaat      4620
     ggaatcgttt ctcgaagttt gaaaggctta gaagaaccgt cgcctacatc taccggttcg      4680
     tagataactg tagacgaaaa aagatgaaac atccgctaca gaattcgcat gttacccacg      4740
     aagagctaac caaagccgag aatgcgctct ggcggctggt acaagcagat acgtttccgg      4800
     aagaggtgtc tcaactccag aaggcgaaga aagggctgaa gttaaaagtt aatcgagcta      4860
     gcccaatcta caagttgtcg ccgttcattg acgagtgcgg cgtggtgcgg atggacacaa      4920
     gaatttccgg agcaatcttc ctgccgttcg acacgaagtt tcctataatc ctccctaaag      4980
     gacatcgtct gactaggatg gttgtcgagt ggtatcatcg atactaccta cacgctaata      5040
     acgaaaccgt tatcaacgag gttcgtcagc ggttccacgt tccctgcctc cgtgcgctgg      5100
     tacggaacct gtcaagatcc tgcgttcaat gtaggatttc caaggctaaa ccattgtgtc      5160
     ctcgcgaagc acctctacct gaggcgcgct tgagcccgta tattcgacct ttcagctttg      5220
     tcgggctgga ctacttcggt cctattcagg tcaaggtcgg acgttcgctg gtgaaacgtt      5280
     gggtcgcact atttacatgc ctcaccattc gggccgttca cctcgaggta gtgcattccc      5340
     tatccactga ggcgtgtaaa atggccatac ggcgatttat cgtacgtcga ggatcaccat      5400
     tggagatcag gagcgacaat ggaaccaatt tccaaggagc cagtcacgag ttacagcagc      5460
     agattagaga catgaatcaa caactttccg ccgtcttcac caacgcagcc acgaagtggg      5520
     tttttaaccc accgtcagcc cctcacatgg gtggctcatg ggagcgacta gtcaggtcta      5580
     taaaggtcgc gttctctgcc ttgacgacta gcagaaatcc ggacgacgag acactgctta      5640
     cgctgatgat tgaggcggaa gggatagtga actctagacc actaacgaat gtaccactgg      5700
     agacagatac ccaggcagcc ttgactccaa atcatttttt actcctgagc tcgcagggag      5760
     tcacacaacc tccaatgacc atcccagaac gcccagagtc cctcaggact aactggcggc      5820
     tgacgacgaa cctggtaaac caattttgga atcgatgggt acgggaatat ctgccaacta      5880
     ttgctggtcg tacgaagtgg catgaagatg cgaaggagcc gaatgttgga gacttggcgg      5940
     tcatcgtgga cccgtcggtc cgaaacggat ggctgcgtgg gcgtattctc tcagttgtaa      6000
     aaggacgaga cgggcgatgc aggcaagtcc tagtgaagac atcaggagga gtactgcggc      6060
     gtccggtgac gaaggttgcc atcctggata tcaaggcagc aaacaacgat gaaggtcagg      6120
     gtaacgcagt accatcggaa gcgctggacg tgcattacgg gtcggggga                  6169
//
ID   BEL-130_AA-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   supercont1.259;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-130_AA_;
KW   BEL-130_AA-I; BEL-130_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-398
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.259; Positions 1321193 1321590.
XX
SQ   Sequence 398 BP; 138 A; 91 C; 58 G; 111 T; 0 other;
     tgttggggtc aaccctacgc cactggcttt atagcgcaca agcctaaata tcgaaacgaa        60
     cacctttcat tatgacagct gtcaatccct gaagtgttga cgtaatatcc gtttatcctt       120
     cctcaaacca ttctttattc agtataaaaa aggcagagtc agaactacca gtgaattaaa       180
     agtaattaaa gctaaatatc agaattatta aagaccgtca tcctgtttat taacaccgag       240
     attaagacaa ggagaccaaa tgtaagtcta cttactttat tgaattcttt cgcctaaaac       300
     ttataattat ccccttaata aatagctttg agctcgccta accccaaaga cagcgtgctt       360
     catagaactc cgaaaataca tccgaaaacg ttccaaca                               398
//
ID   BEL-131_AA-I repbase;    DNA;    INV; 5993 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-131_AA_;
KW   BEL-131_AA-LTR; BEL-131_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5993
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions  802251  808243.
XX
CC   'GGGGA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..5992
FT                 /product="BEL-131_AA-I_1p"
FT                 /translation="MPADDLTMTACGMCQTTSDVDEGMVGCDSCNRWFHYR
FT                 CVGVNENVAEAKNWFCSESSCQEYAKKLTKRQEPKTGKQRKKATSGNESDK
FT                 SSVTPLDQKLKALEKERKAKEREMEEERILKEKRMEMDRFLKEREMEMQEE
FT                 LREKEMQQERELLEVALERKRNYLARVKAMRESYQVQMESIQQELIDGSNQ
FT                 LKRPNELCPNGVQSIKPVQEQKTAVVSKSDHPKSSSELYSQTPVRSSAIKG
FT                 KISRFAMVPAVGSKSKSFDEDAEEKNPDELEDKVQGSENEEDDEEESSDDE
FT                 DEQDTEDDEQSEVEQEKAVKKDNQTRGKTTAPLAPHGRGPTKAQLSARNGI
FT                 TRKLPVFSGKPEEWPLFIGSYNASNAACGFSDVENLVRLQECLKGPALESV
FT                 RSQLLLPQSVTKVINKLRQLFGRPEQLLHHHLDKIRKLDCPKPDKLSTYIP
FT                 FGNAVEQLCDHLEAAELTQHLVNPLLVQDLVDKLPAQDKRDWVRYKQKKKH
FT                 VTLRTFTDFVSKIVAEACEANVNMEFKITQGPSGPLHRMPREKGAVFNHSL
FT                 SSDMQSKPKDQMKLKPCKICQRTDHRLRFCEDFKCLSPSERIKLVEQWKLC
FT                 KVCLNDHGKAQCKFQIRCKVDGCTARHHTLLHPAGRPLAINTHMSCGEAIL
FT                 FRMIPVMLHCGEHIVETLAFLDEGASVTLVEKTLADKLGVQGTKNPLTITW
FT                 TADIKRTEKDSRQMNLWISTKDTEGKILLRTVQTVPELMLPQQSLNAPSLM
FT                 QKYKFLRNLPVESYYDKRPGILIGINNVHAIAPIESRLGSIGEPIAVRSKL
FT                 GWTIYGPSRRTTCAQEEFVGCHNVISNQELHEVLKSHYALEESVAAVAKES
FT                 KDDQRARKILHETTMRVGDRFETGLLWKTDNPEFPDSLPMALRRLKHLEHR
FT                 LEKMPELYDNVRLQMIQYEQKGYAHRATAEELSEAESSGSWYLPINVVLNP
FT                 KKPGKVRLVWDAAATVNGVSLNTQLLTGPDMLAALPSVINRFREHPVAFGG
FT                 DIREMYHQIMIRKADKKVQMFLFRNSSRDKPIVYIMDVATFGSKCSPCQAQ
FT                 YIKNRNALEFATQYPEAAEAIIDKHYVDDYFDSTDTVEEAVRRAKEVKLVH
FT                 SKGGFEIRNWVSNSEEVLHNLGWKKTDKAVHFNQDKQTGMERVLGIIWDPK
FT                 EDVFSFSTDHREDLKPYLRGEKTPTKRIVLSSVMGLFDPLGLLTTFTIHGR
FT                 ILIQNLWRTGCDWDERIDSASELEWRRWIGCLPDVEQVRIPRAYFGGWKST
FT                 EIETLQLHVFTDASLQAYGSAAYLRATVGDEVRSALVMARAKVAPLKRQSV
FT                 PRLELMGAVLGARLLRSVMTNHTLPIQKCYLWTDSQTVLSWLRSDQHNYKQ
FT                 FVAFRVGEIQELTSLADWRKIPSRFNVADLLTKWGNGPDLQAGGPWFSGPK
FT                 FLQQNEEYWPAESLPEANIAEERRALVMVHGTLSAEPVIPVESFSRWTRLL
FT                 RVTATVVRFISNCRRKMAKLPILGTEASDKHRQLIKAKLNVLKRPLLQAEL
FT                 HSAECILWKQAQREGYAEEVRMLKKGEERELGQPVVHLQRSSALYKLTPFL
FT                 DEKGVMRMGGRMQNSLSATYDEMYPIILPKEHEITNKLLQDFHERFGHGNR
FT                 ETVFHEVRQKFKIPKLRSRIALVMKNCVWCKVHRCKPTVPLMAPLPVQRIT
FT                 PGLRPFSAVGLDYLGPVDVSIGRRTEKRWICLFTCLAVRAIHLEIVESLTT
FT                 QSCLMAIRRFICKRGAPDEFFSDNGTNFRGAYNELKKIVEKINNECAEGIM
FT                 NAKIKWNFNPPATPHMGGIWERLVRSVKEALKVLTDGRKLTDEILRTALAE
FT                 TEDIVNSRPLTYMPDYAEESALTPNHFLRGTVKESDTMLQYQADLGGALRD
FT                 SYKRSQYLAEEIWKRWCKEYLPTINQRTKWYTEQRPVSIGDLVFVVDGTNR
FT                 KSWIRGIVECVYVGSDGRIRQADVRTSKGVFRRAIANLAIMEVRDGKSGTS
FT                 EQEVPELRAGD"
XX
SQ   Sequence 5993 BP; 1875 A; 1213 C; 1551 G; 1354 T; 0 other;
     aactcaaaaa atttactcgg ataacctcaa aacgatgcct gctgacgact taaccatgac        60
     tgcctgcgga atgtgccaaa cgacttcaga tgtagatgaa ggaatggtgg gatgtgattc       120
     ctgtaaccgg tggttccatt accggtgcgt aggagtaaat gaaaatgtgg cagaggcgaa       180
     gaactggttt tgctccgaat ccagctgcca agagtacgct aagaagttga caaaaagaca       240
     ggaacctaaa actggaaagc aacgaaagaa ggctacgtcg ggtaatgagt ctgataagtc       300
     cagtgtgacg ccgctggatc aaaaactaaa ggctcttgag aaggaacgaa aagcgaagga       360
     aagagaaatg gaagaagagc gaatcctgaa agaaaagagg atggaaatgg atcgttttct       420
     caaggaaagg gagatggaaa tgcaagagga gcttcgggaa aaggaaatgc agcaggaaag       480
     ggagttattg gaggtcgcct tagaaaggaa gcggaactac ctagcaagag tgaaggctat       540
     gcgagagtcc tatcaagttc aaatggagag tatccagcag gaacttattg atggtagcaa       600
     tcaactcaag cgacctaacg agttgtgccc aaatggtgtt cagtccatca agccggtgca       660
     ggagcaaaag actgcagtcg tctcaaaatc cgaccatcca aagtcttcca gtgaattata       720
     ttcgcagaca ccggttcgaa gttctgcaat taaagggaaa atcagcaggt tcgccatggt       780
     tcctgcggtc ggctcgaaaa gtaaatcatt cgacgaagac gccgaagaaa aaaaccccga       840
     cgagttggaa gataaagttc agggtagcga aaatgaagaa gatgacgaag aagaatcgtc       900
     tgacgatgaa gatgagcagg atacggaaga cgatgagcaa tccgaagtgg agcaggaaaa       960
     ggctgtgaaa aaagacaacc agacgagagg gaagactacc gcgccattag ctccccacgg      1020
     gcgggggcca acaaaagcac agctgtcggc acgcaacgga atcactagaa aacttcctgt      1080
     tttctcggga aaacccgagg aatggccatt atttattgga agctataatg cctctaatgc      1140
     agcctgcggt tttagtgatg tagagaactt ggttcgcctc caagagtgct tgaaaggccc      1200
     tgcattagaa agcgtcagaa gccaactgct actgccacaa tcagttacca aggtgattaa      1260
     caagctccgt caactttttg ggcgacccga gcaattgcta caccaccatc tagacaagat      1320
     caggaagctg gattgtccca agccagataa actctctacc tacataccat ttggtaatgc      1380
     cgttgaacag ctgtgtgacc atttggaggc cgcggagttg acacagcatc tagtaaatcc      1440
     actcttagtt caagatttgg tggataaact tccagcgcag gataaacgag attgggtccg      1500
     ctacaagcag aagaagaagc acgtgacgtt gagaacattc accgattttg tatcgaagat      1560
     agtagcagaa gcatgcgaag caaatgttaa tatggaattc aaaatcaccc agggtccgtc      1620
     cggaccactg catcgtatgc cacgagaaaa gggtgcagtg tttaatcaca gcttgtcttc      1680
     agatatgcaa tcgaagccaa aagatcaaat gaaactgaaa ccttgcaaaa tttgtcaacg      1740
     cacagatcat cgtcttcgct tctgtgaaga ttttaagtgc ttgtctccat cagaacgcat      1800
     aaagctggtt gaacagtgga agctttgtaa agtctgcttg aatgatcatg gcaaagccca      1860
     atgcaagttc cagatccgtt gcaaagtaga cggatgcact gcccgtcatc acactttgct      1920
     gcaccctgct ggtagaccgc tagcgattaa cacacacatg tcatgtggcg aggcgatctt      1980
     atttcggatg attccagtga tgctgcactg cggtgaacac atagtggaaa ctcttgcgtt      2040
     cctggacgaa ggagcctccg ttacactcgt tgaaaaaaca ctagctgaca agctcggtgt      2100
     acaaggaact aagaatccac ttacgatcac ctggactgcc gacatcaagc gcacggagaa      2160
     agactctcgc caaatgaatt tgtggatctc cacaaaagat acggagggaa agattttgct      2220
     acgaaccgtg caaacagttc cagagttgat gctgccacag caatccttga atgcaccgtc      2280
     attgatgcaa aagtacaagt tcctgagaaa cttaccagtc gagtcatatt acgacaagcg      2340
     tccagggatt ttgatcggca taaacaacgt acatgcgatt gcgccgatag aatccaggtt      2400
     ggggtcaatt ggagaaccta ttgcagtgcg ctccaagtta ggatggacca tatatggacc      2460
     aagcaggagg acaacatgtg cgcaagaaga gtttgttggt tgccataatg ttattagcaa      2520
     tcaagaacta cacgaggtcc tgaaatcaca ctatgcactt gaggaatccg ttgcagcagt      2580
     agcgaaggaa tccaaagacg accaaagagc cagaaagatc ctccatgaaa ctacaatgcg      2640
     agtcggcgat agatttgaga ccgggttgct gtggaaaacg gacaacccag aatttccaga      2700
     cagtctaccg atggcactgc gacggttgaa acatttggaa catcggttgg agaaaatgcc      2760
     cgaattatat gataacgttc gattgcaaat gattcagtat gagcaaaagg gatatgcaca      2820
     tcgtgctaca gcggaagaac tatcggaggc tgaatcgtct ggttcttggt acctgccaat      2880
     caatgtggtc ctcaatccga agaaacccgg aaaggtacgc ctggtctggg acgcagcagc      2940
     cacggttaac ggagtttcac taaacaccca gttgttaacc ggtcctgata tgctcgcggc      3000
     cttaccttcc gtgataaatc gttttcggga acatccagtg gcatttggag gggacattcg      3060
     tgagatgtac caccaaatta tgatccgcaa agctgacaag aaggtacaaa tgtttctatt      3120
     ccgtaattca agtcgggata agccaatagt ctacattatg gatgtagcca cttttggttc      3180
     caagtgctcc ccatgtcaag cacaatacat aaagaataga aatgctctcg aatttgcaac      3240
     tcaatatccg gaggcggcag aagcaattat cgacaagcat tatgtggacg actatttcga      3300
     cagcactgac actgtcgaag aagctgtacg gcgagcgaaa gaagtaaagt tggtgcattc      3360
     gaagggaggt tttgagattc gaaattgggt ttctaactca gaagaagtcc ttcataactt      3420
     aggctggaag aagacagaca aagctgtcca cttcaaccaa gataagcaga ctggaatgga      3480
     acgagtgctt ggaatcatat gggatcccaa ggaagatgtc ttttcatttt cgacagatca      3540
     tcgagaagat ttaaaaccgt atttgcgggg agaaaaaaca ccaaccaaaa gaattgtgct      3600
     aagcagtgtc atgggattgt ttgacccact gggtctattg acaacgttta ctattcatgg      3660
     tcgcatactg atccagaatt tatggcgaac gggatgtgac tgggatgagc ggattgattc      3720
     agcaagcgag ttggaatgga gaaggtggat cggatgttta cccgacgtag aacaagtccg      3780
     aattcctcgg gcatactttg gaggatggaa atcaactgaa attgaaacac tacagctaca      3840
     tgtgtttact gatgctagcc tgcaagccta tggaagtgca gcgtatcttc gagctacagt      3900
     tggagacgaa gttcgtagtg cactagtaat ggcgagagcg aaagtggccc cattaaagcg      3960
     gcaatcagtt cctcgtttgg agcttatggg agcagtactc ggagcgagac tgttacggtc      4020
     agttatgacg aatcacacgc tgccaattca aaaatgctat ttgtggacgg actcccagac      4080
     tgtactcagt tggctacgct cggatcagca caactataaa caattcgtgg cgttccgagt      4140
     aggagagata caagagctga caagtttggc tgactggcga aaaattccat caaggttcaa      4200
     cgttgcggac ctgttaacca agtggggaaa tggaccagat ctccaggccg gtggaccatg      4260
     gttcagcgga ccgaagttcc ttcaacaaaa cgaagaatac tggccagccg aatcactgcc      4320
     tgaagcaaat atcgcggaag agaggagagc gttagtaatg gttcatggaa cactgtctgc      4380
     agaaccagta attcctgtag aatcgttttc aagatggacc agacttctca gagtaacggc      4440
     aaccgtcgtt cgcttcataa gcaattgtcg gagaaagatg gctaaactac caatactagg      4500
     aacggaggca tcggataaac atcgtcaact aatcaaagca aagctaaatg ttttgaagcg      4560
     gcctttgtta caagcagagc tgcacagcgc agaatgtatt ttgtggaagc aagcacaacg      4620
     tgaaggttat gctgaggaag taagaatgct gaaaaaaggc gaggaacgtg aattgggaca      4680
     accagttgta catctgcagc gatcgagtgc gttatacaaa ctcacaccgt ttttggatga      4740
     gaaaggagtg atgcgcatgg gaggtaggat gcagaattcg ttatcggcga cgtatgatga      4800
     aatgtaccca ataatattac caaaagagca cgaaattaca aataagttgc tgcaggattt      4860
     ccatgaaagg tttggacatg gtaacagaga aacggtattt cacgaagttc gccaaaaatt      4920
     caaaatacca aaattgagat caaggattgc tctagttatg aagaattgtg tttggtgtaa      4980
     agtacatcgc tgtaaaccga cggttccact aatggctcca ttgcctgttc aaaggattac      5040
     accaggtttg agaccgttca gcgcagttgg tctggactac cttgggccag tggacgtatc      5100
     aattggtaga cgaacggaga aaaggtggat ctgtttgttc acttgtcttg cggtgcgagc      5160
     aatccatctg gaaatcgtgg aaagtctaac aacacagtcg tgtttaatgg cgattcgcag      5220
     atttatctgc aaacgtggtg ctccagatga gttcttttcc gataatggaa cgaattttag      5280
     aggggcttac aacgagttga agaaaattgt agaaaaaatc aacaatgaat gtgctgaagg      5340
     aatcatgaac gcaaaaatca aatggaactt taatccaccg gctacgcccc acatgggcgg      5400
     tatatgggaa aggctagtgc ggtctgtcaa agaagcccta aaagtactga ctgacggaag      5460
     aaaattgacg gatgagattt tgaggacagc gttggcggaa acagaagata ttgtcaattc      5520
     gaggccttta acgtacatgc cggattatgc ggaagaaagt gcgcttactc ccaaccactt      5580
     cttacgtggc acggtcaagg agtcggacac gatgttgcag taccaggcag acttgggcgg      5640
     agcattgagg gattcgtaca aacgttccca atatctagcg gaagaaattt ggaagcgatg      5700
     gtgtaaggaa tatcttccaa ctataaatca acggacaaaa tggtacactg aacagaggcc      5760
     ggtgagtatt ggtgatctgg ttttcgttgt agatggaacc aaccggaagt cgtggattcg      5820
     aggaattgta gaatgcgtgt atgttgggtc tgatggtaga atacgacaag cagatgtccg      5880
     cacttctaaa ggtgttttta ggcgagcgat tgcaaatctg gctattatgg aagttcgtga      5940
     cggtaaatcc ggaacatcgg aacaggaagt accggagtta cgggcagggg atg             5993
//
ID   BEL-131_AA-LTR repbase;    DNA;    INV; 626 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-131_AA_;
KW   BEL-131_AA-I; BEL-131_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-626
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions  801625  802250.
XX
SQ   Sequence 626 BP; 237 A; 87 C; 115 G; 187 T; 0 other;
     tgtcaacacc actgggatga cgagaatgcg ccagtctaca aatcggatta gagataagat        60
     aatgggaaaa caaaaacaaa acctagattg aatgtgaatt gtgctatatg aaactattgg       120
     aaattgttga atttgagacg aaaattattg aattaaaaac taaaatttgg tggtaatcta       180
     cgggcattta ttaagtaagt tgttgttcat gaatttgaag gctaaagtta taaaatacat       240
     actcaaatga tggtttatgc ttaggtgaac tacgacgtgg ttacgactac tatttttgat       300
     aaaaactatc tactaaagtt tggcaactgc aagataaaac cgtttgtaag ttagcaaaaa       360
     attcaaagtg agtactctag aactaaaatt ataaatgaat atactaaaac atcaatttac       420
     taggctaatg ttaaaccgtt ttctgcgcaa aattggatcc gttcagcgaa attgttccac       480
     gaggctagca gtgaaactaa atttgtaagt cacagataaa aagttatgta aattcgtatg       540
     acaaatgtaa ttattgattt cagtttgagc tgctctaaat agactgctac agaaaataag       600
     tgccgtttct gcatacaatc cgaaca                                            626
//
ID   BEL-132_AA-I repbase;    DNA;    INV; 6461 BP.
XX
AC   supercont1.254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-132_AA_;
KW   BEL-132_AA-LTR; BEL-132_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6461
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.254; Positions 1001151  994691.
XX
CC   'CTAGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..6216
FT                 /product="BEL-132_AA-I_1p"
FT                 /translation="MPRTTRVALKANAEMPQPTCEKCKNPYHVAEMVACER
FT                 CHRWYHCTCVEVAVGFNGRWTCKGCIFTVTLSDASISGKSGSTSRSTRVQL
FT                 QLMRLEEEKKAHEKLIQEQLAAKAALDKKYLDEKYVLLIAEAEDEEAGSRR
FT                 SHRSRKSRDSHVQEWIQGLDEAAKGHPELINVDDIFPPVSLSTGMPMPSGG
FT                 MLYKYTGAVRKIVSDPLLNDRTTVGDKPPPSRPAIKWVADNVGIEGIGSAV
FT                 PIRSSTPIRSIGTVQSAISTQPLYIQPVLSQPVYTQSVFPQPTQAASILPK
FT                 LVPRTPLPTFLFPEPISKPPPRVSFPPVSEPPLPPSSGRPPVDMNIESFSS
FT                 NSTQQQANGPRSVVSTSSQPPPVQSSQEPPVRTTEQQSNVPLSSTQASFHH
FT                 PPFQQACTQSHPLRSMTKNHYDEQSQPPSVLRASISYTPSPPLRLPNPEEL
FT                 VPQSSVHQPILPNQSLPHQAEPYITQQQQMPNQQAMWGQFQQLSARQVVPR
FT                 ELPSFTGNPDEWPLFVSSFRNSTAMCGYSHAENLMRLQRCLKGRALEAVRS
FT                 NLLLPSSVPKIMETLETLFGSPERLVQSLLNKVRSVPTPKAERLETLVNFG
FT                 LVVQNLVGHLQAANQLAHLTNPTLLQELVDKLPLHLRLDWALFKRNAGPVD
FT                 LGTFCAYMSVITSAASDVAHFTDLEGSRACGSEKQRKEKAFINAHVSPESR
FT                 KPEQQVKKVDNKERPCYVCKSVQHRIKDCNKFKSLTVGDRLKAVETHQLCA
FT                 SCLVPHGKWSCKSTRICGVGDCDKKHHPALHPSHTAVTKPESAGVKSKSDV
FT                 VVNIHHPMQAATIFRIIPVILYGKEAKISTFAFLDEGSSSTLIDREVADQL
FT                 NLGGESQSLCLTWTGKVSRTEDSRLVGLRISGGESNERFHLDGVSTVRQLD
FT                 LPVQTLQYGELSRRYPHLAGLPVKDYAGAVPRILIGLDNIKLSLPLKVREG
FT                 RINGPVAAKTRLGWTIFGSAGTAKIDSLSPVLHICKSSDESNLHELVKSYF
FT                 ATENLGVSVTSGPEAEEDRRAKEILQQTTVKRPDGHFETGLLWRNDVVELP
FT                 SSYNMAERRLICLERKLRKHPDLRASLEQQISEYQSKGYAHKATPQELEES
FT                 DPHRTWYLPLGVVTNPRKPGKVRIIWDAAAKVNGVSLNDMLLKGPDLLRSL
FT                 PAVLCRFRQRQVAIAGDIREMYHQLKIRKEDRQAQRFLYRSDPLKKPEVFV
FT                 MDVATFGSTCSPCSANFVKNYNAEEWKEELPEAAEAVVENHYVDDYLDSRD
FT                 TEEEMIKLASKVRRVQDAAGFELRNWRSNSEKVLQTLGEGATDSIKDFSFD
FT                 KESQVERVLGMAWLPEEDVFVYSVKLPDHTGTVTKRSILRFVMSFFDPLGL
FT                 ISNLLVHGKVIIQDLWRAKVGWDEDIPEEVFEDWKRWIEQLSQLSGTRIPR
FT                 CYFPGYEPDSFKSLQLHVFADASETAYACVAYFRIIDRGQPRCALIASKAK
FT                 VAPLKPLSIPKLELQAAIIGSRLAKSIAEYHTIPVSRRFFWCDSTNVISWI
FT                 NSDARRYRQYVAVRIGEILEDAEPEEWRWLSTKINVADEATKWGKGPNIHP
FT                 DSRWVTGPEFLYRPENEWVQRREPLPNTEEELRTVYFHRIALIQPFIKYDR
FT                 FSKWERMLRSTAYVYSFKNRLREHAKPDAAKTGVKMKQEDLVQAERTLWRL
FT                 AQAEEYADEIAVLQKAKETSGAEQLELEKSSTIRSLSPFLDEFGVVRMQGR
FT                 TEASPLASYDSKFPVILPKKHRVTELLVDWYHRRFGHHNSETVVNEIRQRY
FT                 HISSLRTVVRRVAKKYQWCIVYKSRPVVPRMAPLPEVRVTPFVRPFSLVGI
FT                 DYFGPYAIKIGRSQVKRWVALFTCLVIRAVHLEVVTSLSTESCKLALRRFI
FT                 ARRGAPTKIYTDHGTNFVGASRELATQLAAMHKELAETFTDTNTRMYFIPP
FT                 SSPHMGGAWERMVSAVKVAMTSINNSRTPSEEVLQTVLCDAESMVNSRPLT
FT                 YVPLETSDQEALTPNHFILLSSSGVKQPEKAPATEGEALRNGWNLCRYVLD
FT                 QFWARWIREYLPDLTRRTK"
XX
SQ   Sequence 6461 BP; 1703 A; 1557 C; 1787 G; 1414 T; 0 other;
     ttctctaaag aactctactc gaagtgagga agagttgccg aaggtggata gtagattgcg        60
     gaggtcagtt agaagaggac gatgcccaga actacgcgtg ttgcgttgaa agccaatgca       120
     gagatgccac agcccacttg tgagaagtgt aaaaacccct atcacgtagc agagatggta       180
     gcttgcgaac gatgtcatcg ttggtaccat tgtacgtgtg tggaggtggc tgtggggttc       240
     aacggaaggt ggacgtgtaa ggggtgtatc ttcacggtga ccctaagcga tgcttcgata       300
     tccggcaaga gcggcagcac ctctcgatcg acacgggttc agctgcagct gatgcggcta       360
     gaggaggaaa agaaggccca tgagaaacta atccaagagc agttggcagc gaaagccgcc       420
     ctggacaaga agtacctcga cgaaaagtat gtgctgctca tcgctgaagc agaggatgaa       480
     gaggcgggaa gtcgtcgaag tcatcgcagt cgaaagagtc gagatagcca tgttcaggag       540
     tggattcagg gactcgacga agctgctaaa ggccacccag aactgataaa cgtcgacgac       600
     atttttccac cggtttccct tagcaccgga atgcccatgc ctagcggagg aatgctgtat       660
     aagtatacag gtgctgtgag gaaaatcgta tcagatccac tactgaacga tagaacgacc       720
     gttggagaca aaccacctcc atcgagacct gctatcaagt gggtggcaga caacgttgga       780
     atagagggta ttggttcagc agttccaatt agatcatcga ctccaattag atcgattgga       840
     acggtacaaa gcgcgattag cactcaaccg ctgtacatac agccagtgtt atcacaaccc       900
     gtgtatacac aatcggtatt tccacaaccc acacaagcag cttctatact accgaagcta       960
     gtaccacgaa ctcctctacc aacattcctg ttcccggaac caatctcaaa accaccacca      1020
     cgtgtttcat tcccgcctgt gagcgagcca ccgttaccac cttcaagtgg tagaccgcct      1080
     gtggatatga atatcgaatc attttcatcg aattcaacac aacaacaagc aaatggtcct      1140
     cgtagtgtgg tgtcgacgtc gtcgcagcct ccaccagtgc agtcgtcgca agagcctccg      1200
     gtacgcacaa ccgaacagca atcgaatgtg ccactatcat caacgcaggc gtcgttccac      1260
     catccaccgt ttcaacaggc gtgcacacag tcgcacccac tgagatcgat gacgaaaaat      1320
     cattatgatg agcaatcgca gcctccatct gtgttgcgtg catcaatatc ttacaccccc      1380
     tcgcctccac tgcgtcttcc caacccggag gagctagtac cccaatcatc ggtacatcag      1440
     ccaatattac caaatcaatc gctaccgcat caggcggagc catatatcac ccagcagcag      1500
     cagatgccaa atcagcaggc gatgtgggga caattccagc agttgtccgc cagacaggtc      1560
     gtgcctaggg agcttccaag tttcactggg aatcccgatg aatggccact ttttgtaagc      1620
     agttttcgga attctactgc tatgtgtggc tattcgcacg cagagaattt gatgagactg      1680
     caaagatgcc taaaaggcag agcgttagaa gctgttcgga gcaaccttct gctaccttct      1740
     tcggtcccga aaattatgga gactttagag acattgttcg ggagcccaga gcgattggtc      1800
     cagtcgctgc tcaacaaggt acgcagtgta cccactccaa aagcggaacg gctcgaaacc      1860
     ctcgtgaatt tcggcctcgt cgttcagaac ctagttgggc atctgcaggc cgcgaatcag      1920
     ctagcccact tgactaatcc tacccttctg caagagttag tggataagct gccactacat      1980
     ctccggttgg actgggcgtt gttcaagagg aatgcggggc cggtggactt gggaacgttc      2040
     tgcgcctata tgagtgtcat tacatcggcc gcaagtgatg tggcacattt cacggacttg      2100
     gaaggatcca gagcatgcgg aagcgagaag cagcgtaaag agaaggcgtt catcaatgca      2160
     cacgtgtccc cggagtcgag aaagcccgag cagcaggtaa aaaaggtgga caacaaggag      2220
     cgaccatgct atgtttgcaa aagcgtgcag caccggatca aggactgcaa caaatttaaa      2280
     tcgttaacgg tgggggatcg tctgaaagcc gtcgaaacac accagttgtg tgcgagttgc      2340
     ttggtgcctc atgggaaatg gtcttgcaag tcaacgcgca tctgtggggt cggagattgc      2400
     gacaagaagc atcatccagc tctacatcca agtcatacag ccgtcactaa gccggaaagc      2460
     gctggtgtga agtcgaaatc ggacgtcgtc gtcaacattc accatccaat gcaagctgct      2520
     acgatattcc gtataatccc ggtgattttg tacggcaagg aagcaaaaat atccacgttt      2580
     gccttccttg acgaaggttc atcgtcgaca ctcattgacc gagaggtggc agaccaactg      2640
     aacctaggag gagaatcgca gtcgctgtgc ttgacttgga cggggaaggt atcccgtacc      2700
     gaagactcca ggctagtggg tctcaggatt tcaggtggag aaagtaacga acgtttccat      2760
     ttggacggtg taagcactgt gcggcaactg gatcttcccg tacagacact acagtatggg      2820
     gaactgtccc gtcgttatcc acatttggcc ggactgccgg tgaaggatta cgcgggagct      2880
     gtgccacgaa tcctaattgg gctggacaac atcaagctgt cgttgcctct caaggtacgt      2940
     gaaggaagga ttaacggtcc ggtggccgcg aaaacaagac tcggatggac gatcttcgga      3000
     agcgccggta cagcgaaaat agactcattg tctccagttc tgcacatctg caagagctcc      3060
     gatgaaagta atctacacga gctggtcaag agttactttg caacggagaa cctcggcgtg      3120
     tccgtgactt ctgggccaga ggcagaagaa gatcgacgag cgaaggagat tctacagcaa      3180
     acgactgtta agcgtcccga cggtcacttt gagaccggat tgctgtggcg gaacgatgtt      3240
     gtagaacttc cgtcaagcta caatatggcc gagcgacgtt taatatgcct cgagcgaaag      3300
     ctgcggaagc atccggattt acgggcaagt ttagaacagc agatttccga gtatcagagt      3360
     aaaggctatg ctcataaagc aacaccgcag gagctggaag aaagcgaccc tcaccgaact      3420
     tggtaccttc ctctcggagt ggtcaccaac ccacgcaagc ccggaaaggt tcgtatcata      3480
     tgggacgcag cggccaaggt gaatggagtg tcgctgaacg acatgctgtt gaagggaccg      3540
     gaccttctta ggtcgctgcc agcagtattg tgccgctttc gtcaacgtca ggtggcaatc      3600
     gcaggtgaca ttcgcgagat gtatcaccag ctgaagataa ggaaggaaga tcgacaggcc      3660
     cagcggtttt tgtaccgtag tgacccattg aaaaagcctg aagtcttcgt catggatgtg      3720
     gctacgtttg ggtcgacttg ctcaccctgt tcggcgaatt tcgtaaagaa ttataacgca      3780
     gaggagtgga aagaagagct tccagaggca gcggaggcgg tagtagaaaa ccactacgtg      3840
     gatgactacc tagatagtcg cgatacggag gaggaaatga taaaactagc ttcgaaagtg      3900
     cgaagggtgc aagatgcggc aggtttcgag ctgcgcaatt ggcggtcaaa ctcggagaag      3960
     gtattgcaga ctctggggga aggtgctacg gattcgataa aggatttcag cttcgacaag      4020
     gaaagccagg tggagcgtgt tcttggaatg gcatggttac cggaagaaga cgtttttgta      4080
     tattcggtaa agctaccgga ccacaccggc accgtcacga agcgaagtat tctgcggttc      4140
     gtcatgagct ttttcgatcc gcttggacta atttcgaacc tgctcgtcca cggcaaggtg      4200
     attatacaag acctttggag ggctaaagtt ggatgggacg aggatatccc agaagaagtg      4260
     ttcgaagatt ggaaacggtg gatcgagcag ctctctcagt taagcggcac tcgaattcca      4320
     cgctgctatt ttcccggata cgagccggac agctttaaat cgttgcagct ccatgtattc      4380
     gcggatgcaa gtgaaactgc ctacgcttgt gtcgcctatt tccggatcat tgatcgtggt      4440
     cagccacgat gtgctttgat agcctcgaaa gccaaagtcg ctccgctgaa gccgttgtcg      4500
     atccctaaat tggaactgca ggcggcgatt attggaagtc gattagcaaa gtcgattgct      4560
     gagtaccaca caattcccgt gagtcgcagg tttttctggt gcgactctac aaacgtgatt      4620
     tcctggatca actcggacgc caggaggtat cgccagtatg tagcggtacg catcggagag      4680
     atccttgaag atgcagaacc agaagaatgg cgttggttat ccaccaaaat taacgtggcg      4740
     gacgaggcca cgaaatgggg aaagggcccc aatattcacc cggacagtcg ttgggttacc      4800
     ggaccggaat tcctataccg gccggagaat gagtgggtac agcggagaga gcctttgccg      4860
     aacactgaag aagaactgcg taccgtttac ttccatcgaa ttgcactgat tcagccattc      4920
     atcaagtatg accgattctc gaagtgggaa cgaatgctcc gatctactgc gtacgtgtac      4980
     tctttcaaga accgtctacg ggagcatgct aaaccagatg ctgctaagac tggagtaaag      5040
     atgaagcagg aggacctagt gcaggctgag agaacgttgt ggcgactcgc tcaagcagag      5100
     gagtacgccg atgaaattgc ggtcctgcag aaagcgaagg aaacttcggg agcagagcag      5160
     cttgaattgg agaaaagcag cacaattaga agtctgtcgc cattcctgga tgaatttgga      5220
     gtggtgcgca tgcaaggtcg gacggaagca tctccgttgg cttcctacga ttcgaaattt      5280
     cccgttatct tgccgaagaa acaccgtgta accgaacttc tggtggattg gtaccaccga      5340
     cgatttggtc atcataacag cgaaactgtg gttaacgaaa ttcgtcagcg ataccacatt      5400
     tcatctctac ggacggtggt gcgaagagtg gcgaagaagt accagtggtg tattgtgtat      5460
     aagtctcgtc cggtggtacc aaggatggca cctcttccag aagttcgcgt aactccattc      5520
     gtccggccat tctcgctggt cggcatcgac tattttgggc catacgctat caagatcggc      5580
     cgcagtcaag tgaagcggtg ggtggcactc ttcacgtgcc tagtcataag agcagttcac      5640
     ttggaggtcg tcacatcgct ctctacagaa tcgtgtaagt tggccctgcg gcgattcatc      5700
     gcgcgccggg gtgcaccgac gaagatctac acggatcatg gaaccaattt tgttggtgcc      5760
     agccgggagt tggccactca gctggctgcg atgcataaag agttggcgga gaccttcacg      5820
     gataccaaca cgcgaatgta cttcattccg ccgtcctccc cgcacatggg cggtgcgtgg      5880
     gaaaggatgg taagtgcggt taaagtagca atgacgtcga tcaacaattc ccgtacgcca      5940
     tcagaagaag ttttgcagac agttctgtgt gatgcggagt cgatggtcaa ctccagacca      6000
     ttgacgtacg tgccgttgga gacatcggac caagaggcct tgactccaaa tcatttcatc      6060
     ttactcagtt ctagtggagt caagcagccg gagaaagctc cggccacgga aggtgaggct      6120
     ctaaggaacg gatggaacct gtgtcgctac gttcttgatc agttttgggc aaggtggatc      6180
     cgggaatatc ttccggacct gactcggcgt accaagtgac atggagaggt gaaacccatc      6240
     gaggaaggag atgtagtttt catcgttggt gaagcaaatc ggaaccaatg gatccgaggc      6300
     agagttctaa aggtcctccc cggaaaggat ggtcgcatac ggttagtaga cgtacaaact      6360
     acagcagggg ttctacgccg tcccgtggcg aagatcgccg tgctcgacgt gcttccggct      6420
     ggtaatcctg ctggatcgga gcagaattac ggaaaggggg a                          6461
//
ID   BEL-132_AA-LTR repbase;    DNA;    INV; 700 BP.
XX
AC   supercont1.254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-132_AA_;
KW   BEL-132_AA-I; BEL-132_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-700
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.254; Positions  994690  993991.
XX
SQ   Sequence 700 BP; 250 A; 112 C; 143 G; 195 T; 0 other;
     tgttgcggaa agcgttacga ccgttgcagc tgcgggagaa attctccgca gggatgctag        60
     cagggacgga tctaacagtc gagctaggtt cattggtatg ggtgaagaag atgacagacg       120
     tcattaatgg aatatttgga aaaagtgaaa tgtgattaga tgccagggag tttctgatta       180
     gaatgaggca gttattattg aaatctacgt ctaaaataaa acatcagttc gaaacatgaa       240
     ttgatgaata ttgtgagtta acatgcaaat aatttaacat acaatgaatt tacttaaaat       300
     tatacatgcg aatcaaaact tataggttag agacaataac aacttacaac tatctttggt       360
     gaattagcat aaatttgatc ctaaaacaat tgattacgaa cataaacagt gagtagaact       420
     tatttcacaa acatatactt atgactaaga cgtaaattaa cgaaaactag gtcgacagac       480
     tacacaagac actactggac ggctacaagg acgttgagga cgtagaccgt acacaagaga       540
     gtcacagagt tgtgagtaat tatagggtaa atgtattgaa tttgaacaac attataatta       600
     aatttaactt ttagctttag agccttttcc cctactgaat aaatggattt gctacaaaaa       660
     tctgtgacct gttccttttg cgtcctgcgc cgcgccaaca                             700
//
ID   BEL-133_AA-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   AAGE02019812;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-133_AA_;
KW   BEL-133_AA-I; BEL-133_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-378
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019812; Positions   42958   43335.
XX
SQ   Sequence 378 BP; 144 A; 67 C; 67 G; 100 T; 0 other;
     tgttctgaac gacgagaaat cagcaccccg gtgcgacagg gtcacacgat ccacacgcag        60
     gagaaatccg tagtgtatga tatcgacagc acacatgtat gcgcaccaat ccgtcatgca       120
     taataaatag aattaaattt gtttctacct agtacatgca gacacaagaa gtaaaatttg       180
     cttacggcta gaacacaaaa cattgaattg cttaaatata tccttaaatt agtaaaagtt       240
     gaacttaaaa ctagtgtaaa attgttggac agtggacaag tttgctatta aggactagaa       300
     atgtaagtaa aactgatttt ccatgcaaaa taagataata attcatctct aataaattgc       360
     agctaaaaag ctgattca                                                     378
//
ID   BEL-134_AA-LTR repbase;    DNA;    INV; 650 BP.
XX
AC   AAGE02019323;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-134_AA_;
KW   BEL-134_AA-I; BEL-134_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-650
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019323; Positions   67036   67685.
XX
SQ   Sequence 650 BP; 233 A; 110 C; 125 G; 182 T; 0 other;
     tgttgggaac ccctggaagg gcaacaatgc caaacgtcaa ccttaacttg aagagatagt        60
     caatagaata tgacagctat agaaattgtt tagatgacta gcgagaagct acaaaggaat       120
     taaattgtgg attagttaag cgaattgaag attaaagtga attaactatt attcggtggc       180
     agtctactca gcctctgctg acattacagt ttacatcaag taagaaacta ttgttctaaa       240
     tgattgcttt atataaatgt ataaaactat gtaggttggg taaaccacaa cgtgagagaa       300
     ccagttggga gttaaattta gattcgctaa tacggaccaa cgtagaccgt gaagccaaaa       360
     atactattgt aaagctaagg aagcgattga acttcgtaag tcaatattta cattaacaca       420
     aattattact aaagcttcca tttacaaaca gtcttggcac agttattaag gttagacccg       480
     agttgagagt ttataacaga agcgggcaag tacgctacgg aaacaactat tgtaagttaa       540
     caatgtaaca ctttttaaaa taccaattat atcacgagaa tacatttcag ctttgatcgg       600
     cttatcacca accagtcgat tcaaggacgt ttctttgcct gatccgaaca                  650
//
ID   BEL-135_AA-LTR repbase;    DNA;    INV; 556 BP.
XX
AC   supercont1.4;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-135_AA_;
KW   BEL-135_AA-I; BEL-135_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-556
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.4; Positions 3158251 3158806.
XX
SQ   Sequence 556 BP; 204 A; 94 C; 89 G; 169 T; 0 other;
     tgttgcggcg ccgcctggca acgctgcaca actgctggaa tctgaaccat tatctactca        60
     caccaagcaa tatgataatg tcaaaccggc gatcgccttt gacgacggag aagtagatga       120
     caacaaaccg tgataaaaag tctaactctg aaacgtggag atctaaagct atttaaatta       180
     aagtatatta taaatatctg aaagctgaat tcattaaaat agttaatgct agtgatttat       240
     ttcctttctt acgctactgt gaattaatta atgctaaagg tgaatcgtaa gaccttaatt       300
     aaagtttgta accctaaata acctaaaatt gatccctaac aggtcaatat aatcgtattg       360
     ccggaataat tgaaattgat actcacctaa aaaagaattg tcataaattt gtaagtttaa       420
     taggagaaat ttatcgagct aagaatgagt aaatgagctt atataatttc agtatacgtt       480
     acatcctctg ataccgttac cgtttataat taccttaaat ataacaagct tacactaaat       540
     tgtaagtatg attaca                                                       556
//
ID   BEL-136_AA-I repbase;    DNA;    INV; 7344 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.01, Created)
DT   11-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-136_;
KW   BEL-136_AA-I; BEL-136_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7344
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7344
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 110-110 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           769..6174
FT                 /product="BEL-136_AA-I_1p"
FT                 /translation="MPIPELRQLVKQERHAWISLENIEEFLSTYQEDRDKS
FT                 AVNLRMKKLDDVYDKYCELRVNIEVLTDDLDIGQDPENAADGETSAQAAMA
FT                 EARRRENEEIFKEFENKYFRLKQALLSKISESTEVVADRKDEAQTYQSSRT
FT                 RYPELKLPTFSGRLAEWMNFRDNFRSLIHDNNQLSAIDKFNYLRTSLKDDA
FT                 LCEINQIQVTAANYALAWGILESKFENHKLIAQEHLKALFTVAPMKCESFQ
FT                 GLNHLLMTFKINLQQLEKLGEDPAQWSTLLAFMLSQKLDDDTLRLWETHHS
FT                 SKNIPSYTSMVNFLENHCSILQSTSARRMCDFKKPSKNPIVHAAVSNKNCV
FT                 VCNSGPHNVEQCSSFGKMKIVDRKVLARKLGLCLNCLRSGHFVADCSRSSC
FT                 GKCGQRHHNLLHPYYSPANQGQNVNQPSSQKHTKGPQAANSNSQQSNQAQN
FT                 RSNSQQPQTTPTPSTSSQNACSPPPTNSSTVHHTATPSQTHHHSNTAILST
FT                 AIVKLGDHHGNTVLARALLDNGSQVCLMTENLSQRLNFRRVRENLSVDGVG
FT                 GCHSVAKQAVLAIVLSCNSSYVSGEVKFLVLPKITSNLPQQHIDTSAWNLP
FT                 SGICLADPAFNEPGSIDVILGVAVFYELLLTEQLKLSSSGPILHNTELGWI
FT                 VAGELPETSVVSYSAVASSSVTTEEIFDELARFWELEACHTKNCLSIEESA
FT                 CETFFEETTTRDPDGKYRVQLPKKKHVLERLGCSKTIAKKRYLSMEKRLDA
FT                 NLELKAMYTAFMHEYLQMGHMKEVLTEKEEHGQEYYIPHHAVLKPDSTTTK
FT                 LRVVFDASCPTDSGVSLNDVLMVGPVVQDDLRSILMRFRLFRYAVVGDAEK
FT                 MYRMIWQHPSDQLLHKIYWRDSAQEQLRTYQLTTVTYGTSSAPYLATRCLN
FT                 KCAEDGVDRYPAAAAVVKKSFYVDDMLAGFHTIEEGKQVCKDVRELLKGSG
FT                 FNLRKWNTNTPEVLSEIPSDLRDDRVVLELDEKATVKTLGLTWEPATDTLR
FT                 IRVPSWRPEGPVTHRVVLSEIARLFDPYGLVGPVIVQGKLFLQELWQAKYS
FT                 WDELLSDDLRTRWLEFRRNLSDLDAISVPRWIAFGRDVISCEFHGFSDASD
FT                 KAYGATIYLRCVSRDGEIAVNLVMAKSKVAPLEDLSKRKKKQSTPRLELSA
FT                 ALLLAHLYESVASSLEIAAAAFFWTDSTIVKCWISSHPSRWQAFVGNRVSE
FT                 IQHATKGGVWNHVPGIENPADIISRGATPSQISNNSLWWSGPEWLKKDIGY
FT                 WPKNMSVPDQQFDSVVLEERPLVSAVLQALPPSDVFMLRSSLLTLVRLTAW
FT                 IRRFSFNCQPRNRRRRMSGLLSAKEHDSALLALVQLAQSECFPLDLSDIAA
FT                 KNEVRPSSKLHSLHPVMIDGLLCVGGRLGNAPVSRSRRHPMILDSHHPLTK
FT                 LILIDYHHRLLHGGPQLMIACVRERFWPLCVRNLARKVMHECVKCFKAKPL
FT                 AHEQLMGDLPLERVSPAPAFQRVGVDYCGPFELRPATRKGAPIKCYVCLFV
FT                 CLVCKAVHIEIVMDLTSEAFLAALRRFVARRGRPDIILCDNATNFVGARRE
FT                 LNELHRLFQRQQFQERVSSDAVRDLIEFKFIPARSPNFGGLWEAAVKSLKG
FT                 HMRRVIGNRMLKFDEFYTVVTQIEACLNSRPLTPLSNDPRDLDVLTPGHFL
FT                 IQRPLTAVTEPSLSEIPEGRLSRWQRVQSYSQLIWKRWSTDYLSTLQSRNK
FT                 WTRQRTNLGVGTMVLLKEDNIPPLKWKLGRITEVHPGPDGNTRVVTVRTKD
FT                 GSFRRAISKICILPLQDNQQNVEERPNAVQQ"
XX
SQ   Sequence 7344 BP; 1978 A; 1604 C; 1828 G; 1933 T; 1 other;
     tatttggtcc ttcgagccgg attggccagc tagtgaagaa agtgctttcg gtaacagtgc        60
     gcgtcgcttg ggtttgatac ggttatcgac ccgatackga gcacaataga ccagtgcggt       120
     ctgattgttc gccattgctc atattgctga tcgcagcaaa gtggttctac gctgtctgcg       180
     tggagatacg caggagaaag tgaaacgatt tcattgcggt tggtgctgat tgttgctgct       240
     gtgcttggtg ctgattgttg ctgttgcggc tggtgctgat tgttgctgtt ggacggtgtt       300
     tggatatacg cacgcgtgat cgcagtgggg actcgtggag gatcgagaac gatctggttc       360
     gtctgctgtg gacatcacca tcgttaccca aacccaggac ggctggagtc aataacagga       420
     agtcagataa gtacagtgtg cgtgagattg tgtggttgag gtggtttagt ctggcttcat       480
     tcctcttacc agctatacca aagctctacg agcggtagag aaaatttagg cactaattga       540
     atattaaatg catgcgatat tgtacacgtc agtagcatcc tgtggagaag ttgtttgtga       600
     ttctccggtt tgaaaattta ttgcgctttg agattgctta ctttcactca gaatttacca       660
     tttggtagta tatttggtct gtcaacagtc aatcgttcgg tcgcttgagg tcccgggagt       720
     gatttgtagt tgtggtgatt cacagtgcgt gaaaattaat caacaacgat gccgatacca       780
     gaactgaggc aactggtgaa gcaggagcga catgcgtgga tatctttgga gaatatcgag       840
     gagtttctgt cgacgtacca ggaagatcgg gataaaagtg cagtgaattt acgaatgaag       900
     aagttagacg acgtgtatga caaatactgt gaattacgag tgaacattga agtgctgacc       960
     gatgatctgg atattggtca agacccggag aatgctgctg atggggaaac ttcggcgcaa      1020
     gctgccatgg ctgaggctcg ccggagagaa aatgaagaga ttttcaaaga atttgaaaat      1080
     aaatattttc ggctgaagca ggcgcttctt tcgaagatca gtgaatctac ggaggttgtt      1140
     gcggaccgaa aagatgaagc ccaaacttac cagtcatcac ggacgagata tcctgaattg      1200
     aagttaccaa cgttttcagg aaggctggca gaatggatga actttcggga caacttcaga      1260
     tcactgatac acgataacaa ccaactcagt gcgatagata agtttaatta tctgcgcaca      1320
     tcgctgaaag atgatgctct ttgtgagatc aaccaaattc aagttactgc tgctaactat      1380
     gcacttgcct ggggcatact ggagtcaaaa tttgaaaacc ataagctcat cgcccaggaa      1440
     catttgaagg cattgttcac tgtggctccc atgaagtgtg agagcttcca aggtctcaat      1500
     catttattga tgacattcaa aatcaacctt cagcaattag agaaattggg tgaggatcct      1560
     gcgcagtgga gtacgctgct agctttcatg ctttcccaga agctagatga cgatacactt      1620
     cgtttatggg aaacacacca tagttcgaag aatattccat catatacatc gatggtgaac      1680
     tttctggaga accattgctc gattctacaa tcgacgtcgg cgcgaaggat gtgtgatttc      1740
     aagaaacctt cgaagaaccc aattgttcat gctgcagtgt caaacaaaaa ttgcgtggta      1800
     tgcaatagcg gcccacataa cgtggaacag tgctccagtt ttggaaaaat gaagatcgtc      1860
     gatagaaagg tgcttgcgcg aaaacttgga ctgtgcctaa attgcttacg atctggtcat      1920
     ttcgttgcgg attgctcgag gtcatcgtgt ggtaaatgtg gacagcggca tcacaatctg      1980
     ctgcatcctt actatagtcc tgcgaaccag gggcagaatg tgaatcagcc ctcctcccag      2040
     aagcacacta aaggacctca agccgcgaac tctaattctc agcaatccaa tcaagctcaa      2100
     aaccggagca attctcaaca accacagact acaccaactc caagtacatc ttcgcaaaat      2160
     gcatgctcac cacctcccac caattcttct actgtacacc acactgctac accttcccaa      2220
     acacaccacc attcaaacac tgccatatta tccactgcta tcgtgaagct cggtgatcat      2280
     catgggaata ccgtgcttgc acgcgcattg ttagacaacg gatctcaggt ctgtctcatg      2340
     actgagaatc tctctcaacg gttgaatttc cgaagagttc gggaaaattt gtcggtggat      2400
     ggagttggtg gttgccattc tgttgctaaa caagctgtat tagcaatagt tttgtcgtgt      2460
     aattcgtcgt acgtgtccgg tgaagtcaag ttcctggtac taccgaagat tacatcaaat      2520
     ctgccgcagc aacacatcga tacttcggcg tggaatctgc cttcaggaat ttgtcttgcg      2580
     gatccagcct tcaacgaacc aggatccatt gatgtgattc ttggagtagc tgtcttctac      2640
     gagttgttgc tgactgaaca gttgaaactt tctagctcag gtccgattct acataacacg      2700
     gagttagggt ggattgtcgc tggagagttg cctgaaacat ctgtcgtcag ctacagcgca      2760
     gtagcttcat cgtctgtgac tacagaagaa attttcgacg aacttgcaag gttttgggag      2820
     ttggaagctt gccacacaaa gaattgcctt tccatcgagg agtctgcctg tgaaaccttc      2880
     ttcgaggaga caaccactag agatccagat ggaaaatatc gggtgcagtt accgaagaag      2940
     aagcacgtgt tggagagact agggtgttcc aagactatag caaagaaacg ctatttgtct      3000
     atggagaagc ggcttgatgc caaccttgag ttaaaggcca tgtatacggc gtttatgcat      3060
     gagtatcttc aaatgggcca tatgaaagag gtgctcacgg aaaaggaaga acatggtcag      3120
     gaatactaca ttccacatca tgctgtcctg aaaccagaca gcaccactac gaaacttaga      3180
     gttgttttcg atgcatcctg tccaacggat tctggtgttt ctttaaatga tgtgctgatg      3240
     gtgggacctg ttgtccagga cgacctacgg agcatcttga tgcggtttcg tctgttcaga      3300
     tacgccgttg taggagatgc agagaaaatg taccgaatga tttggcagca tccatcggat      3360
     cagcttctac acaagatata ctggagggat tctgctcagg agcagttacg aacataccag      3420
     ctcaccactg taacatacgg tacatcatct gcgccatatc ttgccactag atgtttaaac      3480
     aaatgtgccg aggatggagt ggatcgctat ccagcggctg cagcagtggt caagaagagt      3540
     ttttatgtag atgacatgtt ggctggtttc cacacaattg aagaaggaaa acaagtatgt      3600
     aaagatgttc gggagctact gaaaggatca ggcttcaatc tcaggaagtg gaataccaac      3660
     acaccggaag ttttgtcaga aattccttct gatctacgag atgaccgcgt agttcttgaa      3720
     ttggatgaaa aggctacagt gaagacattg ggtctcacgt gggagccagc tacggatacg      3780
     ttgcggatca gagttcctag ttggagacct gaaggtcctg ttacccatcg tgttgtgctg      3840
     tcggaaatag cacgcctctt cgatccttac ggtctagttg gaccagtgat agtccaagga      3900
     aaacttttcc tacaagagct ttggcaagcg aaatactcgt gggatgagtt actaagtgat      3960
     gatcttcgca caaggtggct agaatttaga aggaatctca gtgatttgga tgcaatttct      4020
     gtgcctagat ggattgcatt tggacgggat gtgatatcgt gtgaatttca cggattcagc      4080
     gacgctagcg acaaggctta cggagcaacc atctaccttc gatgtgttag tagagatgga      4140
     gaaatagcag tcaatctggt gatggcgaag tcaaaggttg cacctctaga agacctcagc      4200
     aaaaggaaga agaagcaatc cacgcctcgt ctggagttgt ctgcagcgct actgttagcc      4260
     catctgtatg agtccgttgc tagcagccta gaaattgcag ccgcagcatt cttttggacc      4320
     gattcgacca ttgtgaaatg ttggatctcc tcgcatccgt caaggtggca agccttcgta      4380
     ggaaaccgtg tatctgagat acaacacgcc acgaagggtg gagtgtggaa tcacgtgcca      4440
     ggaattgaaa atccagctga tataatatca agaggagcaa cgccatcaca aatttcaaac      4500
     aattctctct ggtggagtgg accagaatgg ttaaaaaagg acatcggata ctggccaaaa      4560
     aatatgtcag tgccagatca acaattcgat tcagtggtcc tggaggaaag accactggtt      4620
     tctgcagttc ttcaagcgtt gcctcctagt gacgtgttta tgcttcggtc gtctctgtta      4680
     actctggttc gtctgaccgc ttggattcgt cgcttttcct tcaattgtca accgaggaat      4740
     agacgacgga gaatgtctgg attactatca gcaaaagagc atgactcagc cttgctggcc      4800
     ttggtacagc tggcccaatc ggaatgtttt ccgttggatt tgtcagatat tgcagctaag      4860
     aatgaagtaa gaccatcgtc gaagctgcac agtctgcatc ctgttatgat cgatggttta      4920
     ctctgcgtag gcgggcggct cggaaacgct ccggtgtcac gaagccgtag gcatcccatg      4980
     attttggata gccatcatcc acttacgaag cttatcttga tcgattatca ccatagatta      5040
     ctgcatggag gaccgcaact aatgatagct tgcgttcgag agagattctg gccgctttgc      5100
     gttagaaacc tggccaggaa ggtcatgcat gagtgcgtga agtgctttaa agccaagcca      5160
     cttgctcatg aacaactaat gggagatctg ccgttggaaa gagtatctcc agcacctgcc      5220
     tttcaacgtg taggcgttga ttattgtggc ccttttgagc tgcgaccggc cactcgaaaa      5280
     ggagcaccta taaaatgcta tgtgtgcctg tttgtatgct tggtctgcaa agcagtacat      5340
     atagaaatcg tgatggatct cacaagcgaa gcatttcttg ctgcgctcag gcgattcgta      5400
     gctaggcgtg ggaggcctga tataatacta tgcgacaacg ctacaaattt tgtcggtgct      5460
     cgaagagagt tgaatgagtt gcatcgattg ttccaacgtc aacagttcca ggaacgtgtg      5520
     tcatccgacg cagttcgaga cttgatcgaa ttcaagttta tacctgccag gtcacccaat      5580
     tttggcggtc tttgggaggc cgcagttaaa tcgctgaaag ggcatatgcg gagagtgatt      5640
     ggaaatagga tgctgaagtt tgatgaattc tacaccgttg ttacgcagat tgaagcatgc      5700
     ctcaactcaa gaccacttac tccgttgagc aatgatccgc gtgacttgga cgttctaact      5760
     ccagggcact tcctcattca acgtccactt actgcggtaa ctgaacccag tctcagcgag      5820
     ataccagaag gaagacttag tagatggcag cgtgtccaaa gttacagtca gctgatttgg      5880
     aagcgatggt ctacagacta cctgtcgacc ctgcagagtc gaaacaagtg gacacggcaa      5940
     agaaccaacc taggtgtcgg aacaatggta ctcttgaaag aggataatat tccaccgctc      6000
     aagtggaagc ttggaagaat tacggaagtt catcctggtc cagacgggaa cacgagggtt      6060
     gtcaccgtac gtacgaagga tggctcattt cgccgagcca tttcgaagat ctgcattctt      6120
     cccttgcaag ataaccaaca aaacgtcgag gagaggccaa atgcagttca acaataagta      6180
     ttattgcccc cattggggca ctttggcagc ttgcgggata ttttcgccgc ttttcgccag      6240
     ggggctatcc ccaagttatg tatttcatct ttttgtaatc ggaaacgaac tgatcggctt      6300
     tcctttgaca gttctccacg gtacgattcc tgagcatcct tttcgtctgt cagcaaagtg      6360
     ttcaacgccc ccattggggg caaccattgg ctttcgtagc gtatagctac acctgccgag      6420
     ggggccgaca cctgagttac gttaaacaaa attgaatttc tacttcggat ccaatgcgtt      6480
     gttattcttt agcagatctg gatccaccac agcatcgtaa ttcatcgctt ctggtgatca      6540
     atggagatcc aatcagctaa gtacggcccc atatggggca atattggcgc tttacgacaa      6600
     tccacgtcgt tcatgccagg ggccacaatt gaagttacgt ttagttttaa tcagaatcat      6660
     ttcggaagcc aatcgatttc cctctcatca ggatcaattt ctcaactcta accatcgtcg      6720
     tccagcaact cctcctacgg atcaaaatca ggaaatacag ctaagtatgg ccccaatagg      6780
     ggcacaattg gcagcaaacg gcacattctt gccgtattcg ccaggggccg ccctaaaagt      6840
     tatgtttttc aaccctcaat ggttgttcgg agcccaatcg gtctttctat tcgacagaat      6900
     tcctctacgg tgtcttcaaa tccagtgcgc cagccacatc gccgttgttt atctgccccc      6960
     ataggggcac actttggcaa ggtcggagat ttcatccgct atcgccgggg ggcgcaagat      7020
     aagttatgtc cttccaactt acaactactt tggaatcaag ccgtttcatt cttcgacagc      7080
     gtatggtgga aaatctagcg acaggaagca ctgtagagca acagcgtgca ttggagacct      7140
     gacggcataa tcggaagaca tcgaacgagt ttcgcgaatc agtttgacga acgggcaaga      7200
     acggtctaca catagttcaa taaggatatc agatcgagag ttacaagaaa tttgagtaga      7260
     agttgggttt gggaaagatg ttctattctt gaattgttat aataagtttg atatttgaat      7320
     tgagtgaact caaggcgggc ggta                                             7344
//
ID   BEL-136_AA-LTR repbase;    DNA;    INV; 385 BP.
XX
AC   supercont1.101;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-136_AA_;
KW   BEL-136_AA-I; BEL-136_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-385
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.101; Positions 1669143 1668759.
XX
SQ   Sequence 385 BP; 109 A; 79 C; 77 G; 120 T; 0 other;
     tgttagatat aagtttgatt ataattttgt acaccactgt aataacttag attggttagt        60
     tgagtgacca tacataggtt tcacacaacc cgtatcgcta ctcgagagag gtagatacga       120
     agattcgctc tccccgcttc gatagattag aagcaagtta gttataaatc gaccgtcgag       180
     ataatcggtt acgatctgtg gatcgtgcgt cccttttgat acgtagaaat acagtccata       240
     caatcaactc tagtttctaa ttaattaccg ttgtaattaa taaattctac atagtgaccg       300
     tatcaccagt attcgtcgcg tgtgcaatcc gaaactctat ctttcgcggg tgttttcgct       360
     gaagtgcgaa ccgggagttc ccaca                                             385
//
ID   BEL-137_AA-LTR repbase;    DNA;    INV; 757 BP.
XX
AC   supercont1.286;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-137_AA_;
KW   BEL-137_AA-I; BEL-137_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-757
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.286; Positions 1185903 1185147.
XX
SQ   Sequence 757 BP; 274 A; 109 C; 179 G; 195 T; 0 other;
     tgttgcgacg cgttttggac cagcctaaga aatgaaccgg tctagtcgcg agcataaccg        60
     caacatgaca gttggcaaag ttgtagtggt aggcgaagga gagagatggc gaacaaacct       120
     gtcgatgtgt agatagtaaa gggtgaaggt aaataaaaac ataagggcca taagtaaata       180
     gaggaatttc gccatttcga aactagataa aaagtttatc gttcagtgag tggagtttat       240
     ttgcttaaaa tataaaatat ccgggtggta aatagtgcgg acgctggaaa tcaacggtta       300
     gagtttgaac agggaatccg tgagtacaac ctgaaaaaag aaaagatgaa aattagtgag       360
     aaattaaatg taaactactt acctgcaggc ttggtaaaac caaaaattgt cgacgaaaac       420
     ccgtgctaag actgtagttc tgcaattata taaactgtaa gtagaattga aatcagtgga       480
     ttgagaaaat tagcaatatt atagttttac gtgtgatgtt attcaacagc aaaaacacca       540
     tttgaaatcc ggtgaaactt agggtagttg gaccatagtt ggacaccaat accacggatc       600
     ggaagaaatc gaacggcaag acggaaccaa tttattgtga gtaggcgtag attagatcag       660
     ttgaaaataa ttaattgaaa tttaataaat tatagtttga gcattgctga aaaccagtca       720
     gctgcttctg gaaaattttg gtttcccttc gggaaca                                757
//
ID   BEL-138_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   supercont1.251;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-138_AA_;
KW   BEL-138_AA-I; BEL-138_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.251; Positions  110448  110185.
XX
SQ   Sequence 264 BP; 81 A; 49 C; 50 G; 84 T; 0 other;
     tgcaacagta agtagtagct attctctgtg ttattctttg gctacataga ctttgtacat        60
     tcaactttat agatttgcca agttcgcaaa atcacgatat tttggattgt tggggcagcg       120
     taacaactag ggtgaccaat gtaagatttg tatggtatga tttaaatgaa gtaaactaat       180
     gaaatacata gcttacagct ctgaattaca acccaaaccg tggtgtttcg tgctcgctaa       240
     gatctccaaa agtttccccc aaca                                              264
//
ID   BEL-139_AA-LTR repbase;    DNA;    INV; 483 BP.
XX
AC   supercont1.251;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-139_AA_;
KW   BEL-139_AA-I; BEL-139_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-483
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.251; Positions  620527  620045.
XX
SQ   Sequence 483 BP; 145 A; 104 C; 117 G; 117 T; 0 other;
     tgttgacgaa caaggtatct gccctgaacg aacgcagcca agcaagggaa tctgtcggac        60
     aaggcgagat ccgtattgat cactcaagcg gtcactcaga ttacccatac ccatatgagc       120
     attggactgg acagaatgta gcggagagat cgagagaagt cagttgtcca ctaccactgc       180
     tcgcgatcgg tcatcggagg gcgaacctcc gcacgaattt ccgttttagt gtttttatgt       240
     tacgaataaa tgttaattta agtttaataa agtgtaatca gtaaatgccg agaaaatata       300
     gtgtgatttt gtgtaacctg tgttgtgtaa cctgctcttg aagaagaaac ccacttggaa       360
     cgttgccatc gacgaaatcc tccccaagta atttggatga cgacgattcc taccagcaag       420
     acgaaggtca tctgaagggc agccaagcca gacgagagga cgatttttga aggtatccca       480
     aca                                                                     483
//
ID   BEL-13_AA-I repbase;    DNA;    INV; 5782 BP.
XX
AC   AAGE02023429;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_AA_;
KW   BEL-13_AA-LTR; BEL-13_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5782
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023429; Positions    7225    1444.
XX
CC   Positions [4739-5347] - Integrase core
CC   'AAGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1307..5698
FT                 /product="BEL-13_AA-I_1p"
FT                 /translation="MEAQPTYTMMVEFLQKRARVLENISINRPQHSSSKPT
FT                 SQIPAQKKHNLPRLSSNAATEAPTKSFPTCPACEKQKHSLFDCSVFNGLDA
FT                 KGRMKVVTDKKLCSNCFRSDHFARNCRSKYNCKHCSRRHHSMIHPGPSEMD
FT                 KPTPSAEIGPSSVVTAVAATPIPEVVSTAKSPNTSVLLTTVVLIVVDVYGQ
FT                 EHIARALLDTGSQPNAISERLCQLLHLPRKIVNVPIAGVDSTLTNAKHEVL
FT                 AEIRSRVADFSESLEFLVLRKVTSDTPAASFSTTRWSIPENFPLADPDFNT
FT                 SRRVDMIIGAAHFYSFLRDGRFRLPEQGPLLVESVFGWIVAGKFEISGESV
FT                 RQPAVTCHVATVTSLSEQLERFWRIEELQCQNYSVDEQHCENFYRETVSRD
FT                 PTGRYVVRMPKHPEHDQMVGASKPSAIRRLKWLEQRLLKDANVRTQYHDFL
FT                 REYATLGHMYPVQEDEDDSLKACYLPHHPIIKESSTTTKVRVVFDGFAKTS
FT                 SGYSLNDSLLVGPVVQDELLNLVIRFRTFPIALVADIEKMYRQVSMNPADR
FT                 PLQRILWRFDTSQPIQTYELSTVTYGLAPSSFLATRTLLQLVDDEGTSFPK
FT                 ASTAIKKNVYVDDLISGDKSIEETIQLREELTSLLQKGGFRFRKWCSNSLP
FT                 VLAGLPPDLLGTQSLLKFDPEESIKTLGILWEPEADVFRFDVSVIVKEGPP
FT                 TKRTILSAIAQLYDPLGIISPVVVQAKILMQHLWLIALDWDDIVTPDLQRK
FT                 WAEFCKQLPGLANFRIERFAFAPGFHVAELHCFADSSVVAYGACIYVRSQA
FT                 ADGHVQVSLLASKSKVAPLKPLSIPRLELCAALLAARLFEKIVGSLEMKFS
FT                 ESFFWSDSTIVLQWMKSPPRTWKTFVANRIGEIQTATAGSHWQHVSGKENP
FT                 ADMISRGVSVEELMISELWKYGPTWLREDKSTWPSQHIPESKFTVEELELK
FT                 KNVILATQTLSPDSLFTRFSSYRTLLNVTGFILRFCHNSRSKEQRNSSRVL
FT                 SVSELQKAKFALVKLVQAEAFPDDLRRLKKGFTVSNKSSLSLLSPFLDTEE
FT                 LIRVGGRLQLADASYDVKHQIVIPGFHPFTRLLLQHYHRKYVHGGIAMTLS
FT                 VVRDEFWPLNGRKAVRSSIRNCYECSKTNPQPIQQPIGQLPIARVTANEAF
FT                 LCTGVDYCGPVFLKPVHRKAAARKCYICVFICLSTKAVHLELVSDLSTAAF
FT                 LMALDRFMWRRNKPHHLYSDNGTNFIGAKNALHKVYQMLQPGPDNERISKR
FT                 LSEDGIQWHLIPPRAPNFGGLWEAAVKVAKTHLVRQLGSSLLSFEELTTVL
FT                 IKIEGCMNSRPLVPLSTDPNDLGALTPAHFLVRNMIRPLPEADVRNTPLNR
FT                 LTQYEKLQKYSQNFWYRWRNEYLKQLNQQYCSNPKRYQINVGDIIILKDES
FT                 LAPARWPLARVIDTHPGPDGVTRVVTLRTPSGTLKRPVSRICPLECATES"
XX
SQ   Sequence 5782 BP; 1424 A; 1568 C; 1346 G; 1444 T; 0 other;
     tttggtgccg tgaccaggat tcctggtttt cccgtccccg acacacacgt gctgtgtata        60
     acctcaacat ccctgctgtt agagctattg atcgcgatca tagggtgatt gccgccgatt       120
     tgatccatac aaagcctcct gagattggag gtaccaggtg agtacctttc caatcaattc       180
     actgccgttg ttgcggtact gctgggtctt ttttcgaccg ttttagttcg tcctcgggat       240
     caacccgcat cttcattcga agtacgtgcc tacctgcacc cgaaattcaa ttccgttctc       300
     atccgaagct ccatcaaacg attgccgctg atcatttata ttgcatttca tacaaggcct       360
     cctgaaattg gaggtaccag gcgagtacca ttccaattac gctaccctcc gttttgcggt       420
     acttcctgtg tcctttctgc ccgttttagc actgcagttt tcggagtgag ctgctaccat       480
     ggcggatgat aagcgacgca aggcgaaaga gttgaagctg aagcacgcca tcgagtcgct       540
     caatcgcctg gacaagtttc tcgaaggcta cgttcccgat cagcaccaac atgaaattgt       600
     tcatcgcatg gaccgtctag aaaaggtttg gagcgcctac gaaacgattc aagaagagta       660
     cgaggaaatg gacgacgccg aggaatttat tcagaagaat ctggaattac gtggaagggt       720
     cgaagaggtt tacttccgtg taaaagccgg attagtttcg aagatgccgg ttcctattgc       780
     ctccgttgct tctgcctctg cggtacccac tgttgtgcct gctggtccat cgactctcgc       840
     caatgtgaag ctgccgacga tttccctgcc agaattcgac ggagacttca ataactggct       900
     cacgttccac gatacgttcg tgtcgatgat ccattcgtcg acgtagatct cccacgtcca       960
     gaaatttcac tatcttcgag cggccttgaa gggtgaggct gccaccctga tccagtcgat      1020
     cacgattacg gcgcaaaatt actccgtcgc ttggactact cttgtcaatc gctactctaa      1080
     caaggctatt ctccggaaga agcacattag agccttgctg aagcatccga agattgcgaa      1140
     caacaatgtt gacgccctgc atcggattgt ggatgagttc caacgccata ccaaggtcct      1200
     cgaacaacta ggcgagcccg tcgaccagtt tagctccatc ttaatcgaat tgctggagga      1260
     caagttggac gacgcttctc tcactgcttg ggaggaattc atcgcgatgg aagctcagcc      1320
     aacttacacc atgatggtcg aatttctgca gaagcgagcc cgtgttttgg aaaatatttc      1380
     gatcaaccgt cctcaacatt catcttccaa gccaaccagc caaatccccg cccagaagaa      1440
     gcacaacttg ccgcgattga gctcgaatgc cgccacggaa gccccaacga agtccttccc      1500
     aacgtgtcct gcttgcgaga agcagaaaca ctcgcttttc gattgctccg tgttcaatgg      1560
     actggacgcg aaagggcgta tgaaggtggt aacagacaag aagctctgca gtaactgttt      1620
     ccgcagtgac cactttgctc gcaattgtcg ttccaagtac aactgcaagc actgctcgag      1680
     acgacatcat tcgatgatcc acccaggacc gtctgaaatg gataagccca cccccagcgc      1740
     tgaaattgga ccttccagtg tagtaaccgc agttgctgct accccgatac cggaagttgt      1800
     ttcaactgcc aagtcgccca acaccagcgt gctcttgaca acagttgtgc tcatcgtcgt      1860
     cgacgtttac ggccaagaac acatcgcccg tgccttgctg gacacgggat cccagccaaa      1920
     cgcaatcagc gagcgattgt gccagttact ccatcttcct cgcaaaattg tcaatgtccc      1980
     gatagcaggc gtcgatagca cacttacgaa cgcaaagcat gaagtcttag ctgaaatacg      2040
     ttcccgagtg gcggacttta gtgaatcctt ggagtttctg gtactgcgca aagtaaccag      2100
     tgacacaccc gcagcgtcgt tctccaccac ccgatggagc attcccgaaa acttccctct      2160
     cgccgatccc gacttcaaca cttctagaag agttgacatg attatcggag ctgctcactt      2220
     ttattcgttc ctcagagatg gacgattccg tttgcccgaa caaggtccgt tgcttgttga      2280
     aagcgtattc ggctggattg tagccggaaa gttcgaaata tcaggagaat cagtcaggca      2340
     gcccgccgta acttgtcatg tggcgacagt tacatcgtta tctgagcagc tagagcgatt      2400
     ttggcgcatc gaggaacttc aatgccagaa ttactccgta gatgagcagc attgcgagaa      2460
     cttttatcgc gaaacagttt ctcgtgaccc gaccggtcga tacgtcgttc ggatgcccaa      2520
     gcaccctgag cacgatcaaa tggtaggagc atcgaaaccg tctgctattc gcaggctgaa      2580
     gtggctggag cagagattat tgaaagatgc caacgtgagg acccaatatc acgattttct      2640
     cagggagtat gccacactgg gccacatgta tcctgtccag gaagatgagg atgacagtct      2700
     gaaagcctgt tatcttccac accaccctat catcaaagag tcgagcacca cgacgaaggt      2760
     gagagtagtg ttcgacgggt ttgcaaagac cagctctggt tactcgctta acgattccct      2820
     acttgttgga ccagtggtgc aggacgaact cctcaatctc gttatccgtt ttcgaacatt      2880
     cccgatagcg ctggtggcgg atattgagaa gatgtaccgc caagtctcga tgaatccagc      2940
     tgatcgccca cttcagagaa tactgtggcg ttttgatacg tcacaaccca tccagaccta      3000
     tgagttgagc acggtaacct atggccttgc cccctcttca tttctcgcca cccgcacgct      3060
     cctacagctc gtagatgacg aaggcacctc attcccgaaa gcgagcacgg ccataaagaa      3120
     gaacgtgtat gtagacgatc tcatttctgg ggacaagagt atcgaggaaa ccatccaact      3180
     tcgtgaggaa ttgaccagcc ttctacagaa gggtggattt cgtttccgca agtggtgttc      3240
     aaattctctt ccagtactcg ctggtcttcc tcccgattta cttgggacgc aatcattact      3300
     gaagttcgat cccgaagaga gcatcaaaac cctcggaata ctatgggaac ccgaggctga      3360
     tgtctttcgt ttcgacgttt ccgtcatcgt gaaagaagga cctccgacca aacgcaccat      3420
     tctctccgcc atagctcagc tttacgaccc tcttggaata atatctcccg tcgtcgtaca      3480
     ggcgaaaatt ctaatgcagc acctctggtt aattgctttg gattgggacg atatagtcac      3540
     acccgatctt cagcgcaagt gggccgaatt ctgcaaacaa ctgcccggcc ttgccaactt      3600
     tcgcatcgaa cgattcgcat ttgccccagg tttccacgtc gcggagttgc attgctttgc      3660
     cgattcttct gtagtcgcat acggcgcatg catatacgta cgctcccagg ccgccgatgg      3720
     acacgttcaa gtgagtctcc tggcctcgaa atccaaagtg gcccctctga aaccacttag      3780
     tatcccacgt cttgagctgt gcgcggcact ccttgccgct cgcttatttg aaaagatcgt      3840
     tggctccctt gaaatgaaat tctccgaaag ttttttctgg tctgactcga caatcgtcct      3900
     tcagtggatg aaatccccgc cgcgaacttg gaaaacgttt gtagcgaata ggatcggtga      3960
     aatccaaact gcgaccgctg gttcgcactg gcagcatgtt tctgggaaag aaaaccctgc      4020
     agacatgatt tctcgtggag tttccgtcga agaactaatg atcagtgaac tgtggaagta      4080
     cggccccaca tggttgcgtg aggataagtc aacgtggccg tcgcaacaca tccccgaaag      4140
     taaattcaca gtagaagagc tggaactcaa gaaaaatgtg attctagcca cccaaactct      4200
     tagtcctgat tcactgttca cgaggttctc atcgtacagg actcttctga acgtaactgg      4260
     attcattctc cgtttttgtc acaattctcg tagtaaggag cagcgaaatt ctagccgagt      4320
     gctctctgtg tcggaactcc aaaaggcaaa atttgcgttg gtgaaactcg tccaagctga      4380
     agcgtttcct gacgatcttc gtcgtttgaa gaaaggattc actgtatcaa ataaatcgtc      4440
     tctcagcttg ttaagcccat tcttggacac tgaagaactg atccgtgttg gtggccggtt      4500
     gcaattagcg gacgcttcct atgacgtcaa gcaccagatc gtgattcccg gatttcatcc      4560
     cttcacccgg cttcttctcc agcattatca tcgcaaatac gtccatggtg gaatcgcgat      4620
     gactctttcg gttgtccgcg atgagttctg gccattgaac ggccggaaag ctgtccgaag      4680
     ttctatacgg aattgctacg agtgcagcaa aacgaaccct caaccaattc agcagccaat      4740
     cggccaactg ccgatcgcca gagttacagc aaatgaagcc tttctctgta ccggagttga      4800
     ttactgcggt cctgtctttc tcaagcccgt tcatcgcaaa gctgctgcac gaaagtgcta      4860
     catctgtgtc ttcatctgcc tgagtacgaa ggcagttcac ctcgagctcg tcagtgattt      4920
     gagcaccgct gcttttctga tggctctcga ccggttcatg tggagaagga acaagcctca      4980
     tcatctgtac tcagataacg gtactaattt catcggggcg aagaatgccc tgcacaaggt      5040
     gtaccagatg cttcagcctg gaccggataa cgaacgaatc agcaagcgtc tctccgaaga      5100
     tggcattcag tggcacctga tccccccacg tgcccccaac tttggtggcc tatgggaggc      5160
     tgctgtcaag gttgccaaga cgcacctcgt tcgtcagctc ggatcatctc tgctctcctt      5220
     cgaagaattg acgacagtac tcatcaaaat cgaaggttgc atgaactctc gtcctttggt      5280
     gccgctctca actgacccga atgatttggg ggctcttact cctgcacatt tcctcgtgcg      5340
     gaatatgatc cgccctcttc ctgaagccga cgtgcggaac acacccctga atcgcctgac      5400
     ccagtacgaa aagctccaga aatattccca gaacttctgg tacagatggc gcaacgaata      5460
     cttgaaacaa ttgaaccaac agtactgctc caaccctaag cgttaccaaa tcaacgtcgg      5520
     agacatcatt atcctcaagg atgagtccct tgcaccagca cgctggcctc tggcccgcgt      5580
     tattgatacg catcctggcc ctgacggtgt aacccgagtt gtcacgcttc gtacaccctc      5640
     tggaaccctg aagagacctg tgtcaaggat ctgcccattg gaatgtgcaa cagaatcata      5700
     agctaagtat ttgtagttta aacataaagg tataattttt ccatactttg tttgaaaatt      5760
     gcttttcaaa ggtggccggt aa                                               5782
//
ID   BEL-13_AA-LTR repbase;    DNA;    INV; 543 BP.
XX
AC   AAGE02023429;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_AA_;
KW   BEL-13_AA-I; BEL-13_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-543
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023429; Positions    1443     901.
XX
SQ   Sequence 543 BP; 133 A; 131 C; 106 G; 173 T; 0 other;
     tgattaggtt tacattactt ttctcaattt agcatttagc cgtcccgcta caaatgagac        60
     gcactgttac ccactcaatc gaattatcca tctcttttct gttatttgcc cagtttgagt       120
     gcgatacatg catacgtata gataacgacc gccctgttca tgttcttttc aatttgctaa       180
     atacagtatc agaaaagtga aagtgcgtac aagtcgttct tactaacagt cccgaaaaag       240
     ttgacttttg cactgattta ttgttcggtt gctcggttta aatctgcccg ctggttgata       300
     gaagtgtggt caattagaat ctgtgccggt tagagaggat ttcgacctta aatcaatagt       360
     gctacactga gttacgtgtt cggaagcctc ccacgttctt tcaccagttg ccgattccac       420
     gttgtgctgc tattttcccg ctgaagttgt tgcccgtcca taccgccgtc gattcatctg       480
     taactaggaa tttacagaga acccgtcccc aaagcttgcc ggtcagtagc ccatcaacca       540
     tca                                                                     543
//
ID   BEL-13_AnFu-I repbase;    DNA;    INV; 5312 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5312
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 665-665 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..5282
FT                 /product="BEL-13_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MVDEKTLKKAYTKRRNAVEALHRQKGFVVSITTTNTK
FT                 EALNRLDLLERAYEKFESIQDEIDGLEENDDMTNENCDLRAVLEQLYAETK
FT                 TALQAAVTCVSGSVVKAETNTSAQRIKLPTISLPSFSGNPSEWLSFHDTYV
FT                 SLIHDSDGITPVQKFHYLRAALKGEAAIVIQTLAITADNYDLAWKTVVNRY
FT                 SNKVLLRKRHVRSLFAIKKASNATSAEIRRVSDEFALNIKVLEQLGEPIND
FT                 NSSILIEMLIRKLDDDSISSWEESLEPEKQPTYSELLAFLHKRIHQLESIA
FT                 IDHLPANAEHSRKSIKMRVNANVAAFDQHSKCPVCSEDHLVYQCMRFNGYD
FT                 SKKRSEIVSMHKLCRLCLKVGHESRQCSLKLKCRICSKRHNTLVHDVQLQG
FT                 DNHPASSSSVVSGNPASSSAASATSRMTIANISSNNSISRHAHSLLSTVLV
FT                 FVADANGMEYPVRALLDNGAQPNAISERLCQQLRLPRQRANVIITGVDEVP
FT                 TKASSEVTASFRSRSGMYSTSLSFLVLRKVTANTPARSYDIGSWTIPVNIS
FT                 LADPDFNHSNRIDMILGASHFYTFLKEGRIRLSNGPMLVETVFGWVVTGEL
FT                 SQYDLLSDDMDVRCNVATISVEDQIKKFWEIEEVSYPKALPDDEVERYYQE
FT                 STSRDEAGRYMVRLPKHADIESMIGNSKSAATRRFLLLERRLSKDELMKQQ
FT                 YHAFMHEYISLNHMSPLTSNATQDNKISYYLPHHAVIKEASSTTKLRVVFD
FT                 GTAKTSTGHSLNDALLVGPVVQDDLLSLILRFRKFPVAVVADIEKMYRQVL
FT                 IHPADRSLQRILWRFDETQPILEYELATVTYGLTPSSFLATRTMLQLVEDE
FT                 GCKYPLASSAIRNNLYMDDLIAGADSIDQAIRMRDELNEMMSKAGFRFRKW
FT                 ASNELAVLADLPSELLATRSSIRFDEKESINTLGIAWELKSDVFRFNIGAL
FT                 KRQDKWVKRSILSNIAKLYDPLGLVSPVVVQAKILMQELWLSSVGWDEELP
FT                 EQVCLKWAQFCNQLPNLEQFSIPRFAFHSNFVRVELHYFADASNVAYGTCV
FT                 YARSEHENGSVQICLLASKSRVAPLKPLTIPRLELCAALLSARLHERVSNA
FT                 LDMQIDSIHFWSDSTIAIQWIQAPARTWKTFVSNRVAEIQELTHGYEWRHV
FT                 AGKQNPADLISRGVPADQLVKSKLWINGPEWLATSKSSWPETHLPSETTVA
FT                 ELKVHNATVLSSQVLPPDRIFQASSSFTKLLRIVSYIMRFYNNAKVKPELR
FT                 SCNRNLSVDELQESKWILAKLVQNEVFKEELNCLRKNQPIPKSSSLRLLAP
FT                 FIDEKGLLRVGGRLKRSSVPYGVKHPIVLPGFHPFTRLLLKHHHLRLIHGG
FT                 ISVTLSSARDEFWPLQGKRAVRSVIRGCFRCNRANPTPIQQPEGQLPSVRV
FT                 TASSTFVSTGLDYCGPLFLRPVHRKAAPRKCYICVFVCMATKAVHLELVSD
FT                 LSTMSFLMALDRFVSRRNKPAHIYSDNGTNFVGANNSLHSIYEMLQKDEGK
FT                 ICSHLADQSIQWHFIPPRSPNFGGLWEASVKVAKRQLVRQLGSAMLSEEEM
FT                 VTVLVKIEACMNSRPLMALSEDPNDLSALTPSHFLFQEAFTPLPEPDMLTV
FT                 PFNRLGHYQLLQRHSQEFWQRWRNEYLKTLNSQHYPTGKVHQLKVGDMVIM
FT                 KDEQVPVARWPLARVHELHPGEDGIVRVVTLRTANGLVKRAVNKLRYLECS
FT                 REI"
XX
SQ   Sequence 5312 BP; 1452 A; 1171 C; 1279 G; 1410 T; 0 other;
     ttggtgctaa gtgaccagga ttaaccattg ttaattaatc gctgccacaa tctatcatcg        60
     cgcgtttctt ttgtgtggta ttgatagtat atgtgtgtgt taagcggaac aaaatggttg       120
     acgaaaaaac gctgaaaaaa gcctatacaa agcgtcgcaa cgcggtagaa gcgcttcatc       180
     ggcagaaagg attcgtggta tctattacca cgactaatac aaaggaagcg ctcaacaggc       240
     ttgatcttct tgagagagcg tatgaaaagt tcgaatctat ccaggatgaa atcgacggac       300
     tagaagagaa cgacgatatg accaacgaga attgcgattt gcgagcggtt ctggagcagt       360
     tgtatgcgga aacaaaaact gcactgcaag ccgccgtaac atgcgtgagt ggaagtgtcg       420
     tcaaggctga aacaaataca tcggcgcagc gtattaagct gccaacgatt tcgctgccat       480
     cttttagtgg caatccatcg gaatggcttt cttttcacga tacctatgta tcactcatac       540
     atgattccga tggcattacg ccggtgcaaa aattccatta cctacgagcg gcactgaaag       600
     gcgaagcagc gatcgttatt caaacgctgg ctatcacagc ggataattac gatttggctt       660
     ggaaaaccgt ggtaaaccgc tattccaaca aagtgctact acgaaagcga catgtaaggt       720
     cattgttcgc tataaagaaa gcatcaaacg caaccagtgc agaaattcga cgggtatcgg       780
     atgagtttgc gttgaacata aaggttctgg aacaactcgg tgagccgatc aatgacaata       840
     gttccatcct catcgagatg cttattcgga agcttgatga cgattcaatc agttcctggg       900
     aagaatcact agagccagag aagcagccaa cttactcaga gctattggca tttttgcaca       960
     agcggatcca ccagttggaa agtattgcca ttgatcattt gcctgctaat gcagaacact      1020
     cccggaagag tattaaaatg cgtgtaaacg ccaatgtggc cgcatttgat cagcatagta      1080
     aatgcccagt ttgttctgag gatcatttgg tgtatcagtg tatgcgtttc aatggctatg      1140
     attccaagaa gcgatctgag attgtatcca tgcacaaatt gtgtagacta tgtttgaagg      1200
     ttggccatga atcgcgtcaa tgcagtctta aattgaaatg caggatatgt tccaagcggc      1260
     acaacacatt ggttcatgac gtgcagcttc agggcgataa ccatccagca tcatcaagca      1320
     gtgtagtatc cggcaatcca gcatccagca gtgcagcatc agccaccagc agaatgacca      1380
     tcgcaaatat aagctcaaat aattcgattt ctcggcatgc tcattctttg ctctctaccg      1440
     ttttagtttt tgtcgctgat gccaatggta tggagtatcc agttcgcgct ttactggaca      1500
     atggagcgca gcccaacgct attagtgaaa ggctctgcca gcagctcaga ttgcccagac      1560
     agcgggctaa tgtcatcatc acaggggtgg acgaggtacc aactaaggca tccagtgagg      1620
     ttacagccag ctttcgatcg cgtagcggca tgtattcgac gtcgctcagc ttccttgttt      1680
     tgcgaaaggt gacggctaac actccagcaa ggtcctatga catcggtagc tggacgattc      1740
     cagttaacat atctctagcc gacccagatt tcaaccactc aaacagaatc gatatgatct      1800
     taggcgcttc gcatttttac acctttttga aggaaggtcg tattcgtttg agcaacggtc      1860
     ccatgttagt ggaaacagtc ttcggatggg tggtaactgg cgaactttct caatatgact      1920
     tgctgagtga tgatatggat gttcgatgca acgtggctac gatctcagtg gaggatcaaa      1980
     ttaagaagtt ttgggaaata gaagaagtaa gctaccccaa agctttaccg gatgatgaag      2040
     ttgagcgtta ttaccaggaa tcaacttctc gtgatgaagc ggggcgctac atggttcgat      2100
     tgccaaaaca cgcggacata gaaagcatga ttggtaattc aaagtctgca gctaccagac      2160
     gttttctgct gttagaaaga aggctgtcga aggatgaatt aatgaagcag caataccatg      2220
     ctttcatgca tgagtacata tctttgaatc acatgagtcc gttaacctca aatgccaccc      2280
     aagacaacaa aatttcgtac tacttgccac atcatgccgt gataaaggag gctagctcaa      2340
     cgactaaact acgcgttgtc ttcgacggaa ctgctaaaac tagtactgga cattcgttga      2400
     atgatgcatt acttgtgggc cctgtggtgc aggatgattt gctttcgctg atcttacggt      2460
     tccgtaaatt tccagtagct gtggttgccg acattgagaa aatgtatagg caggtactga      2520
     tacatccggc ggatcgctcg ctccagcgga ttctgtggag atttgatgag actcagccta      2580
     tactggagta tgagttggct actgttacgt acggacttac accttcctcg tttctcgcca      2640
     caagaacaat gcttcagctt gttgaggacg aaggttgtaa gtatccatta gcaagcagcg      2700
     caatccgcaa caatctgtat atggatgatt taatagcagg cgcagacagc attgatcaag      2760
     ccatacgaat gcgtgacgaa ttaaatgaga tgatgagcaa ggcaggattc cgatttcgga      2820
     aatgggcgtc taacgagctt gccgtattag cggatcttcc ttcagagttg ctcgccacta      2880
     gatcgtccat tagatttgat gaaaaggaaa gcattaacac gttaggcatc gcctgggaac      2940
     tgaagtcaga tgttttccgt tttaacattg gagctttgaa gcgtcaggat aaatgggtaa      3000
     agcgttccat cctgtcaaac atcgcaaaac tctacgaccc gttgggacta gtgtcaccgg      3060
     ttgttgttca agctaaaatc ctcatgcagg agttgtggct gtcatctgtt ggatgggatg      3120
     aagagctacc tgaacaagta tgcctaaagt gggctcagtt ttgtaaccag ctgcctaacc      3180
     tcgaacaatt cagcataccc cgttttgctt ttcatagtaa cttcgtccgt gtagaactgc      3240
     attattttgc tgatgcttcg aatgttgcat acggcacttg tgtctacgct cgatccgagc      3300
     atgaaaatgg aagtgttcag atctgcttgc tggcatcaaa atccagggtt gccccattga      3360
     agccgttaac tattcctagg ctggagttat gcgcggcgct actttctgcg cgtctacacg      3420
     agagagtgtc taatgctttg gatatgcaga tcgacagcat ccatttttgg tcggattcaa      3480
     caatcgccat tcagtggata caagctccag ctcgtacttg gaaaacgttt gtttcaaatc      3540
     gagttgcaga aatacaggaa ctcacacacg gatatgaatg gagacacgtt gcgggtaaac      3600
     agaatccagc cgaccttata tcacgtggtg ttcctgcaga tcagctagtg aaaagcaagc      3660
     tttggataaa tggaccggaa tggctagcta cctcaaaatc ttcctggcca gaaactcatc      3720
     ttcctagtga aaccacagtt gctgaattaa aagtccacaa tgctacggtt ttgtcctccc      3780
     aagtactgcc tccagatcgc atatttcaag cctcatcttc gtttactaag ttgcttcgca      3840
     tcgtgagcta cataatgaga ttctacaata atgctaaggt taagccagaa ttgcgaagct      3900
     gcaaccggaa tttatccgtc gatgagttgc aggaatcaaa gtggatttta gcgaagcttg      3960
     tccagaatga agtatttaag gaagagctga attgcttgcg caaaaatcaa cccataccta      4020
     aatcatcatc tcttcgtttg ctagcaccat tcatcgatga aaagggtctg ctacgtgttg      4080
     gtggaagatt gaaacgttcg agcgtcccat acggcgtcaa gcatcctatt gtgcttccgg      4140
     gttttcatcc ctttactcga cttttgttga aacaccatca tctgagactg atccacggtg      4200
     gaatatcagt gacactttct tcggctcgtg acgagttttg gcctttacaa gggaaacgtg      4260
     cggtccggag tgtcattcga ggttgtttcc gctgcaatcg agcaaaccca acgccaatcc      4320
     agcagcctga aggtcagcta ccctcggtac gagtaactgc aagcagtaca tttgtatcta      4380
     ctggattgga ttattgcggt ccgttgtttc tgagaccggt gcatcgtaag gcggctcctc      4440
     gaaagtgcta catctgcgtg ttcgtatgta tggccactaa ggcagtgcac ctcgaattgg      4500
     tgtcggatct gagcacgatg tctttcctta tggctctcga tcgatttgtc tccaggagaa      4560
     ataagccggc acacatttat tcggataatg gtaccaattt tgtcggcgct aacaactcgc      4620
     tgcatagtat ttatgagatg ttgcaaaagg acgaaggcaa gatttgcagc catctggcag      4680
     atcagagcat tcagtggcat ttcatacccc cacggtcgcc gaactttgga ggattatggg      4740
     aggcctcagt taaggtcgcc aaaaggcagt tggttcgaca gcttggatcc gctatgctat      4800
     cggaggaaga aatggtcacc gttctcgtta aaatcgaggc ctgcatgaat tcacgtccgt      4860
     taatggcatt atcggaagat cccaacgacc tttccgcgtt aactccatct cattttcttt      4920
     ttcaagaagc tttcactccc ctccctgagc cggatatgtt gaccgtacca ttcaaccgtt      4980
     tgggtcacta ccagcttctt cagagacatt cgcaagaatt ttggcagaga tggcgcaacg      5040
     agtatttgaa gactttgaac agtcagcatt atcctactgg gaaggtgcac cagttgaaag      5100
     tgggagatat ggtgatcatg aaggacgagc aggtacctgt ggcacgctgg ccgttagctc      5160
     gcgttcatga gctgcatcct ggagaagacg gaatcgttcg agttgtgaca ttgcgtacag      5220
     ccaacgggct tgtgaaacga gctgttaaca aattgcgata tttagaatgt tcacgagaaa      5280
     tttgaaaaca tagttgttca aaggggccgg ga                                    5312
//
ID   BEL-13_AnFu-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-219
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 717-717 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 219 BP; 80 A; 38 C; 39 G; 62 T; 0 other;
     tgtttggcac cgaaatgtca aaacaaaatg agccaacctg gttctataaa ggttctgaca        60
     ggaaaaaaag tcggatattg actgtagtga agtcagtcgt tttttgttcc ccggtagatt       120
     acccacgttt tttgtaatct cctccaacgt tataaaataa aacacaacgt agggcaaaaa       180
     cagttattat taattaataa agatattcgg aacaaaaca                              219
//
ID   BEL-13_CQ-I repbase;    DNA;    INV; 6213 BP.
XX
AC   AAWU01008684;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_CQ_;
KW   BEL-13_CQ-LTR; BEL-13_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6213
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 179-179 (2011).
XX
DR   GenBank; AAWU01008684; Positions    9222    3010.
XX
CC   Positions [5263-5820] - Integrase core
CC   'GTTAGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..6213
FT                 /product="BEL-13_CQ-I_1p"
FT                 /translation="MDCMLCNFPNTDRMVSCCVCGSWMHYECVGVNDSIAA
FT                 HSRSFYCPPCQRPTPRPQPPVEEPGKKHDGKAKSSKAGSKAGSKAGSKASS
FT                 VQSGVGARTRLAQLKIQKLEEQKKLALQRLELESKQRDAEMAAKKQVQEAE
FT                 LAALKLQVETEALEETFRLLEELEIGDDDDDGRSVASEQSSRSKVTRWQQN
FT                 QEVMSSTLMRPTKTSAGTGQRAGNPTTSGTVAGQVGQPAGGNRTVLDRALD
FT                 GISLNDTVAQSTLGGFIGRVSETVVSKHATQKPFAPGTHNAESSPSPIKSS
FT                 PTPANGKPQTPTSLIQSLLSRQPVLNSEVSAGSGQGNGQQMNPGGQSQTQS
FT                 GPQQSAGGTTQTHTGTGGGQTTGRRPQSFTKLPGFQEPPRADANQVDRNED
FT                 TPDYYGPTPQQLAARQVISKELPVFTGNPEDWPLFISAYVNTTNACGFSDA
FT                 ENLARLQKYVRGYAYERVQGRLLHPAGVPHAMATLEMLFGRPEMLIHSLLQ
FT                 KVHDAPAPKPDRLETYIDFGLAVQLLCDHLEAGGHEAHLNNPMLLFELVEK
FT                 LPANAKLDWSLYKERCSQVNLTTFACYMSALVKAASDVTLSYGSKQQQQQA
FT                 RVAKLDKSSKDKNFCGAHSSEDVSRTPVKEVTEKKAAPACFVCKDPKHRVK
FT                 DCAEFGKKTLEERRRIVDEYRLCGNCLGVHGKKPCRSSDKCDIDGCQQQHH
FT                 ALLHYKQKSGGTESKRAEQKREKNEPKVSGANAITNHHYAGKTALFRIIPV
FT                 ELHGNNRTVSAFAFLDDGSSRTMVDEEIAKELGVEGEVLPLCLQWTANVKR
FT                 TESESQRIALEISGSEDEARFALNDVRTVKKLDLPRQSLRYAELAKTFPHL
FT                 QGLPVKDYADAAPRILIGNDNAHVTAMLKVREGQPGEPIAARSRLGWTVYG
FT                 KQDHTAGRVHSFHVCECQDDQSLHDLVKEFFSVESLGVEATAGPESDEVQR
FT                 ANKILQETTKRVGQRFETGLLWKYDCFEFPDSYPMAKRRLQCLERRIQKDP
FT                 VIGESVVRQLSEYQEKGYIHKATPAELEEADPRRTWYLPLGVALNPKKPSK
FT                 VRIFCDAAAKVDGVSLNTMLLKGPDLLKTLLHVLFGFREKRVALCADIKEM
FT                 FHQVKIRKEDRHAQRLLWRDDSTKEPEVYLMDVATFGATCSPCSTQFVKNR
FT                 NAEEHSHDYPEAAEAIIRKHYVDDYLDSADSVEEATKLALEVKHVHSLGGF
FT                 DLRNWLSNSKEVLARVGENDPALEKCMQLDKNDPMERVLGMYWKPDEDVFT
FT                 FTMTLTFDADLPTKRQALRIVMSLFDPAGLLCFFIIHGKILIQEVWRAKTE
FT                 WDQKIPDKLKERWMRWIAMFKHLSEVRIPRCYFSKYSIADIVSLQLHVFCD
FT                 ASEEAYSCVAYFRAVYFDGTIQVALIGGKAKVAPLKALSIPRLELNGAVIG
FT                 VRLRKSITNGHSLKIDKTVMWTDSRTVLAWINSDHRNYRQFVACRVGEILS
FT                 KSDAAEWRHCPGKLNPADLATKWGPRGPSFSPDYPWYGRFFILSQEIEWPM
FT                 DVNPTEETTEEELRACLVHSEAVTKLTIDWQRFSDWTRLLRAVAYALRYKQ
FT                 NFVENYRKQPLTKGLLTQEELLVAETTIFRTVQSEAYPDEVATLSVARGKR
FT                 TPRRQVELERTSLIRKLSPFMDEAGVIRSDSRISEATFASHDTRFPIILPK
FT                 GHQVTNVLLFWYHRKFLHSNGETVVNEVRQRFFVSMLRTEVRKIPKKCPLC
FT                 KLKRAMEGKTLAIPRMAPLPAARLQAFERPFSCTGIDYFGPIAVRVNRSTP
FT                 KRWIALFTCLTTRAVHLEVVHTLTTESCKQAIRRFIGRRGAPAEIRTDRGT
FT                 NFVGANNELRLEMNKLDGQLAETFTNTNTRWVFNPPAAPHMGGAWERLVRS
FT                 VKTALAAMYTSRVPNEETLATLLVEAESIVNSRPLTFIPLQSEQQEALTPN
FT                 HFLLLSSRGVVQPPKTSIEPRLACRGDWQLCQAMLDQFWRRWIREYLPTIA
FT                 RRTKWLEEAMPIEVGDLVIVVEEKIRNGWIRGRVVEVCPGRDGRVRDAVVQ
FT                 TADGFLRRPVAKLARLDLNGCKTEPEVSDQLNGSGN"
XX
SQ   Sequence 6213 BP; 1516 A; 1570 C; 1991 G; 1136 T; 0 other;
     aatctaaaag atcgtccgat aggaaggatg gactgcatgc tgtgcaattt tccaaacacg        60
     gaccggatgg tgagctgctg tgtctgcggg tcgtggatgc actacgagtg cgtcggggtc       120
     aacgatagca tcgcggcgca tagtcggtcg ttctactgcc ctccatgcca gaggcccaca       180
     ccaagacccc agccaccagt ggaagaaccc ggcaagaaac acgatggcaa ggccaagagt       240
     tccaaggcgg ggtcgaaagc gggatcgaag gcgggttcca aggcaagttc ggtgcagtcc       300
     ggcgtcggtg cgcgaaccag attagctcag ctgaagatcc aaaagctgga ggagcagaaa       360
     aagctagcgc tacaacgcct ggagctggag agcaagcagc gagacgcgga gatggctgcc       420
     aagaagcagg tgcaggaagc ggagctagcg gcgttgaagc tacaggtcga aacggaggcg       480
     cttgaagaga cgttccgact gctcgaggag ttggaaatcg gagatgacga cgatgatggc       540
     cgaagcgtgg cttcggaaca aagttcgcgc agcaaggtga cgaggtggca gcagaatcag       600
     gaggtaatga gctcgacgct gatgagacca acgaagactt cagctggaac tggtcaacga       660
     gcggggaacc cgacgacatc tggaacagtc gctggtcagg tgggacaacc ggccggtgga       720
     aaccgaaccg ttttagatag ggcgttagac gggatttccc tgaacgacac agtagcgcag       780
     tctacgttag gaggttttat tgggagagtc tcagagactg tagtttcaaa gcatgccact       840
     caaaagccat ttgcaccggg cacacataac gcggaatctt ctccaagtcc aattaagtct       900
     tctccgactc ccgcgaacgg gaaaccccaa acccccacta gtctgatcca gagtcttctg       960
     tcaagacaac cagtgttgaa ttcggaagtg agtgcgggta gtggtcaagg gaacggtcag      1020
     cagatgaatc ctggagggca atcgcaaact caatcgggtc cgcagcagtc agcaggagga      1080
     actacgcaga cgcacactgg gacgggagga gggcagacaa ctgggaggcg accgcagtcg      1140
     tttacgaagc ttccgggttt tcaagaaccg ccacgggcag atgcaaacca ggtggaccgc      1200
     aacgaggaca caccggacta ctacggacca actccgcaac agctcgcagc caggcaggtg      1260
     atctcgaagg agctgcccgt gttcacggga aatccggagg actggccgct gttcataagc      1320
     gcatatgtca acacgacgaa cgcgtgcggg ttttcggatg cagagaattt ggccaggttg      1380
     cagaagtatg ttcgaggtta cgcgtacgaa agggtgcaag gacgcctgct tcacccggcg      1440
     ggagtgccgc acgctatggc aacgttggag atgctttttg gaaggccgga gatgctgatt      1500
     cactcgttgc tgcagaaggt gcacgatgcg ccagcgccaa agccggaccg gctcgagacc      1560
     tacatcgatt tcgggttggc ggttcagctg ctctgcgatc atctggaagc tggaggacac      1620
     gaggcacacc tgaacaaccc gatgctgctg ttcgagctgg tggagaagct gcctgcgaac      1680
     gcgaagctgg attggtcgct gtacaaggag cgttgcagcc aggtgaacct gacgacgttt      1740
     gcgtgctaca tgtcagcgtt ggtgaaggca gcctcggacg taacgcttag ctatgggtcc      1800
     aagcagcaac aacagcaggc gcgggttgcg aaactggaca agagcagcaa ggacaagaac      1860
     ttctgcggcg cgcactcctc cgaagacgtg tcacggacgc cagtcaagga ggttacggag      1920
     aagaaagcgg cgccggcgtg cttcgtctgc aaggacccca aacaccgcgt gaaggattgc      1980
     gccgagttcg ggaagaagac gctggaagaa cgtcggagga tagtcgacga atacagactg      2040
     tgtggcaatt gtctaggtgt tcacgggaag aagccgtgtc gaagcagcga caaatgcgac      2100
     attgacgggt gccaacagca gcatcatgct ctgctgcact ataagcagaa gtcgggaggc      2160
     acggagtcga agcgcgctga gcagaagcgg gagaagaacg aaccgaaggt gtcaggagcg      2220
     aacgcgatta ccaaccacca ctacgccggg aagacggcgc tgttccgaat catcccagta      2280
     gagctgcacg ggaacaaccg tacggtgtca gctttcgcat tcttggatga cggatcgtcg      2340
     aggacgatgg tggacgagga gatcgccaag gagctcggcg tcgaagggga ggtgcttccg      2400
     ctgtgtttgc agtggacggc gaacgtgaag cgcaccgaat cggagtctca gcggatcgcg      2460
     ttggagattt ccggtagcga agacgaggcc aggtttgcgc ttaacgacgt gcggacggtg      2520
     aagaagctgg atttgccacg acagtcgttg cggtacgcag agctggcaaa gacgttccca      2580
     catctgcaag gcctgccggt gaaggactac gccgacgctg ctccacgcat tctcattggg      2640
     aatgacaacg ctcacgtcac ggcgatgctg aaggtccgag aaggacagcc tggagaaccg      2700
     attgcggcgc gatcccgact cgggtggaca gtgtacggca agcaggacca tactgctgga      2760
     cgcgtacaca gttttcacgt gtgcgaatgc caggacgacc aatcgctgca cgatctggtg      2820
     aaggagttct tctcggttga aagtttgggt gtggaagcga cagcaggtcc ggaatctgat      2880
     gaagtccaga gagcgaacaa gatcctgcaa gaaacgacga agcgggtcgg ccagcgattc      2940
     gaaacggggc tgctgtggaa gtacgactgc tttgagtttc ccgacagcta tcctatggcg      3000
     aagcgtcgac tgcagtgctt ggaacgacga atccagaagg atccggtgat tggcgagagt      3060
     gttgtgaggc agctgtccga gtaccaggaa aaggggtaca tccacaaggc caccccggca      3120
     gaactggagg aagctgaccc tcggcgcaca tggtacctac cgctaggtgt cgcgctgaac      3180
     ccgaagaaac cgtcgaaggt ccgcattttt tgcgatgctg ccgccaaagt ggacggagtc      3240
     tcgctgaaca cgatgctgct caaaggcccg gatcttttga agacccttct gcacgtgctg      3300
     ttcggtttcc gggagaagcg agtggcactt tgcgccgata tcaaggagat gtttcaccag      3360
     gtcaagattc ggaaggaaga ccgacacgct caacgtttgc tgtggcgtga cgactcaacg      3420
     aaggaaccag aagtctactt gatggacgtc gcgacgttcg gggccacatg ctcgccatgc      3480
     tcgacccaat tcgtcaagaa caggaacgca gaggagcact cgcacgacta ccccgaagcg      3540
     gcagaagcca tcatccgaaa gcactacgtg gacgactatc tggacagtgc cgattcggtg      3600
     gaagaggcga cgaagctggc gttggaagtg aagcacgtac actctctagg cggcttcgat      3660
     ctacggaact ggctgtccaa ctccaaggag gttctcgcac gggtcgggga gaacgatcct      3720
     gctctcgaga agtgcatgca gttggacaag aacgacccga tggagcgagt gctgggaatg      3780
     tactggaagc cggacgaaga cgtcttcacc ttcacgatga cgctaacgtt cgatgccgat      3840
     cttcctacga aacggcaagc gctgcggatc gtaatgtcgc tctttgaccc ggctggcctg      3900
     ctttgcttct tcatcatcca cggcaaaatc ctgatccaag aggtgtggcg agcgaagacc      3960
     gagtgggacc agaagattcc ggacaagctg aaggagcgct ggatgcggtg gattgctatg      4020
     ttcaagcatc tgagcgaggt gcgcattccc cgctgctact tctcaaagta ctcgatcgct      4080
     gacattgtgt cgctccagct gcacgttttc tgtgacgcca gcgaggaagc ctactcgtgc      4140
     gtagcgtact ttcgcgcggt gtactttgac gggacgattc aagtagcgct gatcggggga      4200
     aaagctaaag tggctccact caaggcattg tctatacccc gattggaact gaacggtgcg      4260
     gttatcggag tacggttgcg gaagtcgatc acgaatggcc acagcctgaa gattgacaag      4320
     accgtgatgt ggaccgactc gagaacggtg ctggcctgga tcaactcgga ccatcggaac      4380
     taccggcagt tcgtggcgtg tcgggtaggt gagatcctgt cgaagtcgga cgcagcggag      4440
     tggcgccact gtcctggaaa actgaatcca gcggacctgg ccacgaagtg gggcccgagg      4500
     ggtccaagtt tctcgccgga ttacccgtgg tacggacgtt tcttcatcct gtcgcaggaa      4560
     atcgagtggc ccatggacgt gaatcccaca gaggagacga cggaggaaga gttgcgtgcc      4620
     tgtctggtcc acagcgaagc ggtgactaag ctgacaatcg actggcaacg cttctctgac      4680
     tggacgcggc tgctgcgggc ggtggcgtac gctctccgtt acaagcagaa cttcgtagag      4740
     aactaccgga agcaaccgct aacgaaggga ctgctaacgc aggaggaact gttggtggcg      4800
     gagacgacga tcttccggac agtgcagagt gaagcgtatc cagacgaggt ggccaccttg      4860
     tccgtagcgc gcggaaagcg gacgccgaga cgtcaggtgg agctggagcg aaccagtctg      4920
     atccggaagc tgtcgccgtt catggacgaa gcgggagtga ttcggtcgga ttctcggatt      4980
     tccgaagcta cgtttgcgtc gcacgacact cggtttccga ttatcctacc gaaaggccat      5040
     caggtgacga acgtgctgct gttttggtac catcggaagt ttcttcactc caacggcgaa      5100
     acggtcgtga acgaagtgag acagcgattt ttcgtatcca tgctgcgtac ggaggtgcga      5160
     aaaattccaa agaagtgtcc actgtgcaag ctgaagcgag cgatggaagg gaaaactttg      5220
     gctatcccac gcatggcccc actccctgca gcgaggctgc aggccttcga gcggccgttc      5280
     tcctgcactg gtatagatta cttcggaccg atcgccgtac gagtaaatcg cagcacgcca      5340
     aagaggtgga tcgcattgtt cacgtgcctc actacgcgtg ccgtgcatct cgaggtggtg      5400
     cacacgctga caaccgagtc ctgcaagcaa gcaattcggc ggttcattgg acgcaggggc      5460
     gcgccggcgg agatacggac cgaccgagga acgaacttcg taggagcgaa caacgagctg      5520
     cgactggaga tgaacaagct ggacggtcaa ctggcggaaa cgttcaccaa caccaacacg      5580
     cgatgggttt tcaacccgcc agctgcgccc cacatgggag gcgcttggga gcggctagtg      5640
     aggtcagtga agacggcgtt ggcagcgatg tacacctcca gggtaccaaa cgaggagact      5700
     ttggcgactc tgctggtgga agcagagagc atcgtcaact caaggccgct tacgttcatc      5760
     ccattgcagt cggaacagca agaggctttg acgccaaacc actttctact actgagctca      5820
     cgcggagtgg ttcagccccc gaagacgtcg atagaaccaa ggctggcatg cagaggagat      5880
     tggcagcttt gccaagcgat gctggatcag ttctggcggc gttggatccg cgagtatctc      5940
     ccgacgattg ctcgcagaac gaagtggctg gaggaggcaa tgccgatcga ggtaggcgat      6000
     ttggtaatag tggtggagga gaagatacgg aatggctgga taagaggacg ggtcgtggag      6060
     gtctgcccag gacgagatgg gagagtacga gatgcggtgg tgcagacagc ggacggtttc      6120
     ctgcgacgac cagtggcaaa gttggcacgc ttggacttga atgggtgtaa gactgaaccg      6180
     gaagtttcgg accagcttaa cgggtcgggg aac                                   6213
//
ID   BEL-13_CQ-LTR repbase;    DNA;    INV; 673 BP.
XX
AC   AAWU01008684;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_CQ_;
KW   BEL-13_CQ-I; BEL-13_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-673
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 180-180 (2011).
XX
DR   GenBank; AAWU01008684; Positions    3009    2337.
XX
SQ   Sequence 673 BP; 220 A; 127 C; 153 G; 173 T; 0 other;
     tgttccgacg cggcgcaaga aatgtcatca ccgaaaaccc cccggcgtga tcatatttgc        60
     aacactgcgg cggccaacag cgctcaggcg gacagggaca gaaccagatc ccaaacagtc       120
     ggtgacgtcg ttgctacgaa acgtcaaagc gaatgattgg taaaaagttt gttaaccaac       180
     gaaaacgaaa gtggtgcgaa aagttcggaa agtggaattt gtgcgattaa gggagaaaaa       240
     cgtctgcatt tagttgattt ttattctttt gtgcaactac actcgtgagt aggtgttgga       300
     gagataactt atctaaaact aatcctaact taatctaatc aggaagatcg caggggaact       360
     gctctcctca tctgctgctg taaaaagggg ccttaatttg taggttatct gtgcgtgagt       420
     agaaagaaac ataaattagt tggaataatt aaattagcta aaaaatactt accttcgata       480
     gttgcccgca cgtccggcga taagtgtcat tgggagttga attcggagtt aaactagggt       540
     gaccgatgta agtaaaaatc tactgaaata ttgtatttag aaactgacat gaaattatag       600
     cttttagcaa tacttacact gcaatcaact gtgtttaaat cgctgaaaag aagcccgaaa       660
     actcgtccca aca                                                          673
//
ID   BEL-13_DAn-I repbase;    DNA;    INV; 5514 BP.
XX
AC   AAPP01018779;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DAn_;
KW   BEL-13_DAn-LTR; BEL-13_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5514
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018779; Positions  116102  121615.
XX
CC   Positions [4577-5131] - Integrase core
CC   'GTCAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..5479
FT                 /product="BEL-13_DAn-I_1p"
FT                 /translation="MHADASEHARQLEWSMNIEVCQICGNKNETASENWVQ
FT                 CDVCGRWYHFECAGVEDDIESKDWSCDFCLAGCSHIAPYGSMQRSPVQPQT
FT                 REDAMATPEPHDKALAVDTLIDMAGSGENTHAQEGNPERNRNQLLLKMLEE
FT                 KRQSEAKFIEEKYKLLMQMNPTDVPEAGMVRATDSPTSSQIAARQAIPKDL
FT                 PTFSGDPEEWPLFISTFEHSTTAAGYTNVENMLRLQKSLKGKARELIRDKL
FT                 LLPNLVPDVISTLKMFFGRPEHILEKMVEKVRRLAPPKDRLEALIEYALAV
FT                 RNVCAIMEACDLKAHLNNPMLVKELVDKLPNQHKLNWAMQPRDDRIAAVKA
FT                 FSDWLYKIAEAASSVVAPSFYKSGAVNTHNSRATQGQARSNASQTEAAQQQ
FT                 VQSGCVACGDISHRPPQCQVFLNLDTQHRWQIITSSKACFCCLKVHRNRCR
FT                 TGNCGINGCTRRHHELLHTEQGSTQNLVSTHQDDNYGSQFFRIIPVKLRNG
FT                 SRMIEIYAFLDEGSSVTLVDASVFQRLGIQGQAAPMCLQWTAETTRIESES
FT                 VKASVQISETNSDRFYWLNNVQTVQNLALPKQTVEMKELRSRFQHLRDLPL
FT                 ESYSAQPTLLIGSNNWKLAVPRRIREGKWNEPIASKCMLGWTIQGSTNPQR
FT                 SIVMHHCDCDWQELHDDIKNHYSLETLVPRKLYSAEDKLAVKILETTCQEK
FT                 SGKYEVGFPWRGGIDKLPESRGNALKRLTCIKKKVSQEPDMYDKIDAQVRN
FT                 LLDKGYAVKLSKEETCRENSRTWYLPIFIARNPNKPSKLRLVWDAAAKSHG
FT                 CALNDYLLKGPDCLNPLIEVLLAFRVNKIAICGDIAEMFHRINIREEDMHA
FT                 QRFLWYDRSSDKVETYVMRAMTFGISCAPFIAHFVRDKNAEAHQEDFPLAL
FT                 NAIQKAHYVDDYIDSMRNEQEAIQTTRQVIEVHRRGGFEIRNWSSNSKEVL
FT                 KSLQSNGNVGSQEPVDFCSTEKILGMSWDPHKDVFKFLCRFARLKRDVLAE
FT                 NIVPTKREVLQVLMSIFDPLGFLSCHTIGLKILLQRIWRLNIDWDQELPEK
FT                 ILEDWRLWKTLLGQIRIFEVPRCFSPDTSDPRQTELHTFVDASEYAYSAVC
FT                 YLRVAMDAKVDVSLVIAKSKVAPLKPLSIPRMELQAAVMGARLAHKVMSTR
FT                 NLRIDNATYWSDSKTVLQWLTMDPRNFHQFVMHRVAEILETTQVEQWRWVP
FT                 SKLNVADGATKITDQTQQKTWITGPGFLKAESSHWPTSTKQESIIDTSEIR
FT                 KHVMTTCARSVVMFNAHHFSSWRRMYRAVAIIFLFVDRLRAKCAKQDMPTA
FT                 TTMDHVRKAKILLYKQSQAIAFAEELKVLSVGATLRKGNRLVGLNAYVDND
FT                 GVLRTRGRLNSIDIAEDAIILAPGCRITNLIVRSFHEKYHHLAHETAINDI
FT                 KASFYISRLRVLYKSVRSTCQRCKVDSAAPRPPQMAPIPRARIGSFQRPFT
FT                 YTGVDYFGPLLVNVGRRKEKRWVALFTCLTLRAVHFEIAYSLDTSSCIMCL
FT                 SNFMALRGTPKEIFSDNGTNFRATEKAVREELKKIEHDKITIKFDGIKWRF
FT                 NPPGAPHMGGAWERLVRTTKGILKNICPSYSFNDEGLRNALMEAQFIINSR
FT                 PLTFVSLDTEDDAALTPNHLLLGSANGYKPLPKEGMNLQRRWIETQRFGDR
FT                 FWQRWIKEYAPVLTRRTKWFEKVPPITIGSIVVIVDELLPRNLWLKGRVID
FT                 TMKAKDGQVRRVTIKTQHGILERPATKIAVLDVGLEDGN"
XX
SQ   Sequence 5514 BP; 1667 A; 1305 C; 1416 G; 1126 T; 0 other;
     tttctaaaaa acttcgagtt ccaaaaaact tcgttaccta cggatcaaag cgtcggattc        60
     ccagcagata acagctaggt cgagctgatc acgtcgatta caggaacgaa aggacttttg       120
     cggatcaagg cagaggtaaa ggcgtggctg ccctagaaag aaaagctagg taagcacgca       180
     gatcgaacga agaagcacac gtatgcatgc agacgcgtca gaacacgcac gccagttaga       240
     gtggagcatg aacatagaag tgtgccaaat ttgtgggaac aagaacgaga cagcgtcaga       300
     gaattgggtt cagtgtgacg tttgcggaag gtggtaccat tttgagtgtg ccggcgtaga       360
     ggacgacatt gagagcaagg actggagttg cgatttctgc ctagcgggtt gcagccacat       420
     agcaccgtac ggcagtatgc aaagatcacc ggtacagcct caaacacgcg aagacgcaat       480
     ggccaccccc gaaccgcacg acaaagcgct agctgtcgat actctaatcg atatggccgg       540
     cagcggagag aacacacacg cgcaggaagg aaatccggaa aggaatagga accaattgct       600
     tttaaagatg ctagaggaga aaaggcaatc ggaggcaaag tttatagaag aaaagtataa       660
     acttctcatg cagatgaatc ccactgatgt accggaagcc gggatggttc gagctacaga       720
     ttcaccaacg agcagtcaaa tagcggcccg gcaagctata ccaaaagatc ttccaacatt       780
     cagtggagat ccggaggagt ggccgttatt tatcagcacg ttcgaacaca gcaccacagc       840
     agctggatac accaacgtgg aaaacatgct acgtctgcaa aagtcgctta aaggaaaggc       900
     tcgtgaactg attagggata aacttctact tccgaaccta gttccagatg tcatcagcac       960
     tctgaagatg ttcttcggca gaccagagca tatcctagaa aaaatggtgg aaaaggtgcg      1020
     aagactggca ccacccaaag acagattgga ggcgttaata gagtacgcgc tagcagttcg      1080
     caacgtctgt gcgattatgg aggcatgcga tctgaaggca catcttaaca atccaatgct      1140
     ggttaaggag ctcgtagata agcttcccaa ccaacacaag ctaaattggg caatgcaacc      1200
     tcgcgatgat aggatagcag cagttaaagc attcagcgat tggttgtaca agatcgcaga      1260
     ggcagcatct tcagtagtgg cgccatcgtt ttacaaatca ggcgcagtta acactcacaa      1320
     cagtcgcgca acgcaaggac aagcacgatc gaacgcaagc caaacggaag cagctcagca      1380
     gcaagttcaa tcggggtgcg tggcgtgcgg cgacatcagt caccgcccac cacaatgtca      1440
     ggtgttcttg aacctcgaca cgcagcacag gtggcagata atcacatcga gtaaagcatg      1500
     tttctgctgc ctcaaagtac atcgcaatag atgccgaacc ggaaactgtg gaattaacgg      1560
     atgtacaagg cggcaccatg agctacttca cacggaacaa ggcagtacac aaaatctcgt      1620
     gagtacgcat caagacgaca actacggaag tcaattcttt cgcatcattc cagttaagct      1680
     acgcaatggc agcaggatga tcgaaatcta tgcattccta gacgaaggat catccgtgac      1740
     tttagtagac gcatctgtat tccaaagatt aggaatacaa ggccaagctg cgccaatgtg      1800
     tttacagtgg accgcagaaa caactcgaat tgagagcgaa tccgtaaaag catcagtcca      1860
     aatctctgaa accaattccg atagatttta ttggttgaac aacgtccaga ccgttcagaa      1920
     cctagcactg ccaaaacaga cagtcgagat gaaagaacta cgtagcagat tccagcatct      1980
     gagagactta ccgctagagt cctattctgc ccagccgaca ttgctaatcg ggtcgaataa      2040
     ttggaagcta gcagtccctc gcaggatccg agaagggaaa tggaacgaac cgatagcatc      2100
     gaagtgtatg ctaggatgga ccatccaagg atcgacgaac ccccaacgat ctattgtcat      2160
     gcatcactgc gactgcgatt ggcaggagct tcatgacgat atcaagaacc attacagcct      2220
     tgagacgctc gtaccacgta agctatattc agccgaagat aagctagcag tcaaaatatt      2280
     agagaccacc tgccaagaga agtcaggaaa atacgaagtc ggttttccgt ggcgtggtgg      2340
     catcgacaaa ctgccagaga gccgcggtaa cgctctgaaa cgccttacct gcataaagaa      2400
     aaaggtatct caggaacctg atatgtacga caagattgac gcccaagtca ggaaccttct      2460
     agacaaagga tacgcggtta agctatccaa ggaggaaacc tgccgtgaga acagccgtac      2520
     gtggtatctg ccgatattca tagcgcgaaa tccaaataag ccgagtaagc taagactggt      2580
     atgggatgca gccgcgaagt cacacggatg tgcactgaat gactacttac ttaagggacc      2640
     agattgcctg aacccactca tagaggtctt actagccttt cgtgtcaaca agattgcgat      2700
     ttgcggagac attgcggaaa tgtttcacag gatcaacatc cgtgaggagg atatgcacgc      2760
     gcaacgattc ttgtggtatg acagaagcag cgataaagta gaaacctatg ttatgcgggc      2820
     tatgactttt gggatcagtt gcgcaccatt catcgctcac ttcgttcgag ataaaaatgc      2880
     agaagcccat caagaagatt tcccattggc cttaaacgcc atccaaaagg cgcactacgt      2940
     cgacgactac atcgatagca tgaggaacga acaggaggcc atccagacca ccagacaagt      3000
     catagaggtt catcgaagag gcggattcga gatccgaaac tggtcttcta attcaaaaga      3060
     agtccttaag agcttgcaaa gcaatggcaa tgttggtagc caagaacctg tggatttttg      3120
     ttcgactgaa aagatacttg gtatgtcctg ggacccacat aaggatgtgt ttaagtttct      3180
     ctgcagattt gcaaggctga aacgcgacgt cctggcagaa aacatagtcc cgaccaagcg      3240
     agaagttctg caagtcctta tgtcgatctt cgatccatta ggattcttgt cgtgccacac      3300
     gattgggctg aaaatacttc tccagcgtat atggcggcta aatatcgact gggatcagga      3360
     gctgcccgag aagattctgg aagactggcg cctttggaaa actcttttag ggcaaatcag      3420
     gattttcgag gtgccgagat gcttctcccc agacacatca gatccccgcc aaacggagct      3480
     ccatacattc gtcgacgcca gcgagtatgc gtattctgct gtctgctact tgcgtgtagc      3540
     aatggatgcc aaagtcgacg tctctttggt gatagcgaag tcgaaggtgg cacctttaaa      3600
     accactctcg attccgcgta tggagctgca ggcagcagtt atgggagcac gcttagccca      3660
     caaggtgatg agcacgcgca acctgcggat cgacaacgcc acatactggt cagattcaaa      3720
     gacagtactg cagtggctga ctatggaccc ccgtaacttt catcagttcg tgatgcacag      3780
     agtcgccgaa atcctggaaa caacgcaagt cgagcaatgg cggtgggtac cctcgaagct      3840
     gaacgtagca gacggagcta caaagatcac cgaccaaacc cagcagaaga cgtggataac      3900
     ggggccaggg ttcctaaaag ctgaatccag ccattggcca acatcgacaa agcaggagag      3960
     catcatcgat acttcagaaa tacggaagca tgtgatgaca acgtgcgcga gatcagtggt      4020
     tatgttcaat gcgcaccatt tctcgagctg gcggcggatg tatagagcag tagcgataat      4080
     attcctgttc gtcgatcggt tacgagcgaa atgcgccaag caagacatgc caacagccac      4140
     gacgatggac catgtgagga aagcgaaaat actactttat aagcaatccc aagccatcgc      4200
     cttcgccgaa gagttgaaag tgctatccgt gggagcgacg ctgcgcaaag gaaacagatt      4260
     ggtcggattg aacgcatatg tagacaacga tggagtactg cggactagag gcagactgaa      4320
     ctcaattgac atagctgaag acgcaattat actagctcca ggatgccgga taactaacct      4380
     aatagtgagg agctttcacg agaagtacca tcatcttgct cacgagactg caataaacga      4440
     catcaaggct tcgttttaca tcagccgcct ccgagtgttg tataaatccg tgcggagtac      4500
     atgccaacga tgcaaggttg acagtgcagc tcccagacca ccccagatgg caccgattcc      4560
     gagagcgaga ataggaagct tccagagacc gtttacttac acaggcgtcg attattttgg      4620
     cccgttattg gtgaacgtcg gcaggcgcaa agagaagaga tgggtagctc tgttcacctg      4680
     cctcacgttg cgcgcggtgc atttcgagat cgcctatagt ctggacacaa gttcatgcat      4740
     catgtgcctc tccaatttta tggcacttcg agggactccg aaggaaatat tctcagacaa      4800
     tggtacgaac ttcagagcca cggaaaaagc cgtgcgagaa gagctgaaaa agatcgagca      4860
     cgataagatc accattaagt tcgatggcat aaagtggcga ttcaacccac caggagcacc      4920
     acacatgggc ggagcatggg agagactcgt ccgtacaaca aaaggaattt tgaaaaacat      4980
     ttgcccaagt tactccttca acgacgaggg cctgagaaac gccttgatgg aggcgcaatt      5040
     tatcatcaac tcgcgaccgc tcacgttcgt aagtctggac actgaggatg acgccgctct      5100
     gaccccgaac cacctactgt tggggtcagc gaatggatac aagccactgc caaaagaagg      5160
     gatgaatctg cagcgtagat ggatcgagac tcagcgcttc ggggaccgtt tttggcagcg      5220
     atggattaaa gagtatgcgc ccgtattaac caggcgcacc aaatggttcg agaaggtacc      5280
     tcccataacc attgggagca tcgtagtcat cgtagatgag cttctaccca ggaacttgtg      5340
     gctaaaggga cgagtgatcg acacaatgaa ggccaaggat ggacaagttc gacgagtaac      5400
     tataaagacc cagcacggca ttttggaaag accagcaacg aagatagcgg ttttggacgt      5460
     cggcttggag gatggtaact gaccacgaac cgggatcaat tacgggggag ggaa            5514
//
ID   BEL-13_DAn-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   AAPP01018779;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DAn_;
KW   BEL-13_DAn-LTR; BEL-13_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-286
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018779; Positions  115816  116101.
XX
SQ   Sequence 286 BP; 99 A; 43 C; 65 G; 79 T; 0 other;
     tgttgccgcc gtaacagaat tttgatttaa atttgaattg tttagaataa gcacacatat        60
     gtaaacttat cgataggttt agtaacggcc aaaagaagga aaagcgtcgg ccatcgctat       120
     tagaaagaag aagagaaata cggtgaagtt aacgtgtgga taaaacacga agttttttag       180
     cgcgcttttc acatttttgt ggcacgcata tggactaata aagattatta ttaagaaatt       240
     gtgtgtttgc taaagaaacg tggggccaca cgtcccggag acaaca                      286
//
ID   BEL-13_DAzt-I repbase;    DNA;    INV; 5721 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5721
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 776-776 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..5692
FT                 /product="BEL-13_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTLEDLKRQRSNIKRNIARIKSVVEGKTEKPICNDE
FT                 LRYRLSILETYFKKVLSVQADIEDLNPNDEGRADLEDTYIAIKLSIKDKLG
FT                 GDLNTSMVAPDYHPPPVRSSLPRLSLPTFDGTYANYKNFINSFEQLVVRES
FT                 GLSNIEKFNYLLGCLKGPALDTIQAFQITSENYPKALEKLKNRYDNPTLIF
FT                 LEGIDALFALQPIEKANCQQLRSLFDKASAIFSSLESIGKPEDIAQSMLIY
FT                 IVMDKCDQMTQKKWKESLDYQKLPTWLSCTQLVERHCQFLHSSGASSGTPS
FT                 QRKAEGNKSNRHANQQINSSFAITNPSCSLCSSSGHKIANCAQFKAMNSNQ
FT                 RFDHVKRLGLCINCLGNGHRVAQCPSTHRCRTCNRNHHSTLHHSQPQQPLQ
FT                 SSAGQSSNPEPTRQPSQPSWQTADISSYQAASHSHMDIAAEDQILLATAMV
FT                 LVKDASGEYKLGRALLDSCSQVNFVTEAFAQKLRLRRERHHLGIRSIGDTL
FT                 TNLKARTTTSIKSRTSGYQLTLQFGITSHIAYQPDSEIDISNWNLPANTPL
FT                 ADESFYMTRRIDLLLGTEAFYGALSVGQIRIGPNLPTLQKTLFGWVVAGRY
FT                 QRQRNGQPPLCLATAEESIDENLQQLWKVDSIVVRPETILPNHHRCEEHYR
FT                 VTTHKDASGRIVVRLPFQEDPGCLGSSVDTARSRFVAIERRLSRLPDIRLQ
FT                 YTSFMQEYESLGHMSLVSNPNLEEPHYYIPHHFVLKPTSTSTKLRVVFDAS
FT                 CRTSSQRSLNDLLLVGPTIQDELYLQLLRFRXYRFGITADVTKMYRQVLVG
FT                 EEDRKFQYILWRASPDADLQTYQLNTVTYGTASAPFLATRSLHFLAEECKD
FT                 EWPLGAAAVKTAFYVDDLLCGADDIDTLLKLKKEITSTLACGHFPLCKWHS
FT                 NHPGVMEDESTKEINISENSISSTLGVTWHQQSDAFRFTFTPKEVYPSTTK
FT                 RTILSTASSLFDPIGLLSPLVIVSKIILQELWLLKLDWDESVPQNLSCAWS
FT                 TCLDSLNSLSSLAVSRFCLQPDARSIQIHGFCDASIRAYGCCLYVRTENSL
FT                 GQVSVKLFTSKSRVAPVKKQSLPKLELCGAHLLAQLYSKIKAIFTKHTITT
FT                 YFWSDSQLVLHWLKQHSVTLSTFVGNRVSDIQTLTSDGSWRYVPTHQNPAD
FT                 LLSRGCNVNELIQSTWFSGPSFLLEDSLNWPTTGQRQDVDMDVVNSEKRKS
FT                 IFTAVQETNYILKIVGNISSYSHSLRLIAWMIRFIRICRKQATFTTTSPTP
FT                 DELRFASHCLIWNIQQIHFAADIRLLQKQTYLKSSLKFLTPFLDNVNGFEL
FT                 IKVGGRLEHSTLPDGQKHPLLLPSQSQFVWSYVRHLHLRNYHAGPKALVAL
FT                 IRLEYWIVNARDLARRVVRSCVHCVRYRPKLLQQLMGSLPPTRLSPARPFE
FT                 RCGIDFCGPINTYLRIRGKGPTKSYIAVFVCLITKAVHIEVVSDLSTKAFL
FT                 NALKRMGGRRKLPADIFCDNATNFVGASNQLQELKRFLFSKETQDEIYKYC
FT                 ASDFINFHFIPPRAPHFGGLWEAAVKSAKGLLNRTLASTRFTFEELSTVVV
FT                 EIEAILNSRPLSPLSSDPNDCSALTAGHFLVGDSLRSLPERSLEHIKLTNL
FT                 DRYDMIAAVKQRFWKQWSADYVNELRSRTKWTAPSTNLTEGTMVIIHEDNL
FT                 PPLRWKLGRVQSTVLGKDGRVRVVHLRTANGTCCRPIHKLAILPVV"
XX
SQ   Sequence 5721 BP; 1497 A; 1418 C; 1274 G; 1530 T; 2 other;
     ttttggcgcc caacgtgggg cacgtgtgtt aattcttagt gaacaattaa aatactcgca        60
     tttatgtaca atccctacta acacttttcg tcggtacata atttgcaaat acaacaactg       120
     cagtgttcgt ttagctttgc agctgccgtc gcaattgccg aaaacccatt acctatagtc       180
     tcgattgcgg ggtcatcacc ctcgctttgc tctcgcggtt ctcggttaat tttatcgttc       240
     gcttgtcacc cacaacgcaa gcaacggcgc ttgctttcct ttgcggctac ctgctcttgt       300
     ccagagatca acgagttatc tattggaatt ccaccgcttc ttttcgtttc gctttcgttg       360
     ccgctgtcgg aattgtcgct gactctctct cccttggaac aactgcactc agttttttgc       420
     ttcgccttcg cctccaccgt gggatttgtg ctttggctac tgctggctgg tttcgttcgt       480
     tgctgcctgc atttgttatt gttggaacct agaagtctgt gtgcgtgcaa ttacactaca       540
     caacaaaatg acgacgcttg aagatttgaa acgccaacgg agcaacataa aacgaaacat       600
     agctcgaatc aaatctgtgg ttgaagggaa gacggaaaag ccgatttgca atgacgagct       660
     tcggtatcgt ttgagcattt tggaaaccta tttcaagaag gttctaagtg tccaggctga       720
     catcgaagac cttaacccaa atgatgaagg acgggcagac ttggaggaca catatatagc       780
     aataaagcta tccataaagg acaaactggg aggtgactta aacaccagta tggttgcgcc       840
     tgactatcac ccaccgccag tgagatcatc gttaccaaga ttgtcgttgc ccacctttga       900
     cggaacgtat gccaactaca aaaactttat caattcgttt gaacagcttg tcgtgcgtga       960
     gtctggattg tccaatattg agaagttcaa ttacttgcta ggctgcctaa aggggccggc      1020
     gttagacacc attcaggcat tccagatcac aagcgagaac tatccgaagg ccctagaaaa      1080
     acttaaaaac cggtacgata atcccactct tatattttta gaaggtatcg atgctttgtt      1140
     tgcactacaa ccgattgaga aggcaaactg tcagcagctt cgcagtctgt ttgataaggc      1200
     gtctgcgata tttagctcat tggagtccat cggcaaaccg gaggatatcg ctcagtcaat      1260
     gctgatctac attgtcatgg acaagtgtga tcagatgacc cagaagaagt ggaaggaatc      1320
     attggattac caaaagttac cgacctggct atcatgcaca cagcttgtgg aacgccactg      1380
     tcagttcctc cattcgtctg gagcctcatc tggtactccg tcgcaacgaa aggctgaagg      1440
     caataagtca aatcgtcacg ctaatcagca gataaactcg tcgtttgcca ttactaatcc      1500
     gtcttgttca ctttgttcca gttctggcca taagatcgct aactgtgcgc agtttaaggc      1560
     aatgaacagc aaccaacggt tcgaccacgt gaaacgcctc ggtctctgca tcaactgtct      1620
     cgggaacggc catagagtgg cgcaatgtcc atcgactcat cgttgccgaa catgtaatcg      1680
     gaatcatcac tcgacgttgc atcactcgca gccgcaacag ccactccaat catcagcagg      1740
     acagtcctca aatccggaac cgacaaggca accgtcgcag ccctcttggc aaacagctga      1800
     tatttcgtcg tatcaagctg cgtcacattc gcatatggac atcgctgcag aagaccaaat      1860
     tttgttggca acagccatgg tattggtaaa ggatgcatca ggtgaataca aactcggtag      1920
     agcgttgctt gattcatgtt cccaggttaa tttcgtaacg gaagcctttg cgcaaaaact      1980
     tcgtcttcgc cgtgagaggc accacctcgg aattcgtagc ataggagaca cccttacgaa      2040
     tttgaaggcc cgtacgacga cctccatcaa gtcacgtacg tctggctacc agctcaccct      2100
     ccagtttgga attacatccc atattgcata ccagccagat agcgaaatcg acatatcgaa      2160
     ctggaacctg cctgccaata ctccattggc cgatgaatcg ttttacatga ccaggcgaat      2220
     tgatcttctg ctgggaactg aagccttcta tggagcacta tctgttggac agattcgcat      2280
     tggtccgaac cttcccactc tgcaaaagac gctgtttggt tgggttgttg ctgggaggta      2340
     ccagcgccaa cgtaacggac agccaccatt gtgcttggcc acggcagagg aatcgatcga      2400
     tgaaaacctg cagcaactat ggaaagttga ctctattgtc gtccgacctg agacaattct      2460
     tccaaatcat catcgctgtg aggaacacta cagggttaca actcataagg atgccagtgg      2520
     ccgaattgtc gttcgcttgc catttcaaga agacccagga tgccttggaa gttctgtaga      2580
     tacagctcga agtcgattcg ttgccattga gagacggctc tctcgtctac cggacattcg      2640
     attgcagtac acatcattca tgcaggagta tgaaagtctc ggccatatgt ccctcgtatc      2700
     gaatcctaac ttggaagaac ctcactacta tatacctcat catttcgttc tcaaaccaac      2760
     cagtacctcg acgaagctca gagtcgtctt tgacgcgtct tgccgtacgt catctcaacg      2820
     gtctcttaac gacttactct tggttggccc taccatccaa gatgagttgt atttgcaatt      2880
     gctgcgtttt cgawtgtata ggtttggcat cactgctgac gtcactaaaa tgtacagaca      2940
     ggtacttgtc ggtgaggagg atcgaaagtt ccagtacatt ctgtggcgag cgtccccaga      3000
     tgctgacctt caaacctacc aactcaatac cgtaacatat gggactgcgt ctgcgccgtt      3060
     tcttgcaact cgtagtttgc atttcttagc tgaggagtgt aaggatgaat ggcccttagg      3120
     agccgcagca gttaaaactg cgttttatgt tgacgatcta ttgtgtgggg ctgatgacat      3180
     agacacactt cttaaactga aaaaagaaat tacgtcgact ctagcttgtg gtcattttcc      3240
     attatgcaaa tggcattcaa atcatccagg tgtaatggaa gatgaatcga ctaaggaaat      3300
     aaacatttca gaaaactcca ttagtagcac actcggcgtg acttggcatc aacaaagtga      3360
     tgcatttagg ttcactttca cacccaagga agtctaccct tctaccacaa aacggacaat      3420
     tttgtccact gcgtcatcgc tattcgatcc catcggtctg ctgtcaccat tggtcattgt      3480
     ctcgaagatc attctccagg agttgtggct tttgaaactc gactgggacg agtctgttcc      3540
     acaaaatcta agctgcgcat ggagcacttg tttagattca ttgaactcac tgtcgtcact      3600
     agcggtatct cgtttttgtt tgcagcccga cgcgaggagt attcaaatac acggattttg      3660
     cgacgcatcg attcgggcat atggctgctg tctttatgtg cgtactgaga attcgcttgg      3720
     acaggtctca gtgaaattgt tcacgtccaa gtccagagta gcacctgtga agaagcagtc      3780
     tctcccgaag ctggaactat gcggcgcaca tttacttgct caactgtaca gcaaaatcaa      3840
     ggccatcttc acaaaacaca ccatcacgac ttatttttgg agcgactcac agcttgtatt      3900
     gcattggttg aaacaacact cagtcacttt atcgaccttt gttggaaaca gagtgtccga      3960
     tattcagact ttgacttcgg atggaagctg gcgctacgtg ccaacacacc aaaacccggc      4020
     tgatcttctg tcgcgaggct gcaacgtgaa cgagttgatc caatctacat ggttttcagg      4080
     tccttcattt ctactcgagg attcgcttaa ctggcccacc acagggcaac gacaagatgt      4140
     tgacatggac gtagtcaact cggagaagcg aaaaagtatt ttcactgccg tacaggagac      4200
     aaactacatc ctcaagattg ttggtaacat cagttcatat tcacatagcc ttcgtctgat      4260
     tgcttggatg ataagattca tacggatatg taggaaacaa gctacgttta ccacaacctc      4320
     gccaacacct gatgaacttc gttttgcttc ccattgcctt atttggaata ttcaacaaat      4380
     ccattttgca gctgatattc gcttacttca gaagcagact tatttaaaga gtagcttaaa      4440
     gtttcttact ccctttctag ataatgtgaa cggatttgaa ctcatcaaag taggcggacg      4500
     actagaacac tcaaccctac cagatggcca aaaacatccg ttgcttctgc ctagccagtc      4560
     tcaatttgtt tggagctatg ttcgccattt gcatcttcga aattatcacg ctggacctaa      4620
     agcgttagtc gcactcattc gcttggagta ttggattgtc aacgccagag acttggcacg      4680
     tcgagttgtc cgctcatgtg tacactgcgt tcgctacaga ccaaagttgc tgcaacaact      4740
     catgggctca ttaccaccta ctcgactttc tcctgctcga ccctttgaac gctgtggaat      4800
     tgacttttgt ggacccatca atacgtatct acgcattcga ggaaagggsc ctactaaatc      4860
     ttacatagcc gtgttcgtgt gcctcatcac caaggccgtt cacatcgaag tagtctcgga      4920
     cttgtcaacg aaggcgttct taaacgcgtt aaaacggatg ggaggtcgtc gcaagctgcc      4980
     ggcagacata ttctgtgaca atgctactaa ttttgtaggg gcatcgaatc aactgcagga      5040
     actgaaaagg tttttgttct cgaaggagac acaggatgaa atttataaat attgcgcatc      5100
     cgattttatt aatttccact ttattccccc cagagcacct catttcggag gactttggga      5160
     agcggcagtc aagagtgcca agggactgct caatcgtacg ttggctagca ccagattcac      5220
     ctttgaagag ctgagcactg tcgtcgtcga aatagaagca atcctcaact cacgaccact      5280
     gtcaccactt tcttcagacc caaacgactg tagtgctctc acggctggtc atttcttggt      5340
     tggtgactca ttacgctcac tacctgagcg atctctggaa cacatcaagc tgacaaattt      5400
     ggatcgctac gacatgattg cagccgtcaa acaacgtttt tggaagcaat ggtcggctga      5460
     ttacgtcaac gagttgcgat cgcggacgaa gtggacagca ccatcaacga acctcaccga      5520
     gggtacgatg gtcatcatcc atgaggacaa tctgccccca ctacgctgga agttaggccg      5580
     agtgcagtct actgtgcttg ggaaggatgg tcgtgtacga gtggtgcacc tccggacagc      5640
     aaatggaaca tgttgccgtc caatacacaa actggcaatt cttccggttg tttgaaagca      5700
     gtcctttcaa cggggccggg a                                                5721
//
ID   BEL-13_DAzt-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-280
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 781-781 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 280 BP; 83 A; 73 C; 41 G; 83 T; 0 other;
     tgttcggtca aacttcgtcc acccaaacta gccaaacacc tctcgtagcc agagcgtacg        60
     ctcataattg tacgctctca ctattctcgc ctatgctcgg tgctcatgca ctgagatccg       120
     aataaagcag tcgtcgactg atactcaaca gcatctcatc gtctggttgt ggttaattat       180
     ttcttctaat tcgatttgtt aattcactta ctttgaagct aacacacccc cacaattaaa       240
     caaataaata ttaataagaa aaacgcttct tgttcaaaca                             280
//
ID   BEL-13_DEl-I repbase;    DNA;    INV; 7716 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7716
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 443-443 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(926..1195,1044..1340,1217..2395,2301..3164,
FT                 3080..5155,5107..6180,6048..6656,6660..7427)
FT                 /product="BEL-13_DEl-I_1p"
FT                 /note="DUF1750, retropepsin, reverse
FT                 transcriptase, peptidase A17 and integrase."
FT                 /translation="IEPSNTGPISRVPIFAVLFFEFVKHSNKFRYLNRFIQ
FT                 KLIKTPNRVPAPRVPRPGLLVLYDSTYPTIHIFCSKYILQAHIHFTSAAQL
FT                 PSLKHRTAFRLHVFRVQVFWYYMIQPTQLYTYFVPNIFSKHISILHRQHNF
FT                 LVDALFPLSLRHALSSASIHDHRLVPSVYFFYSYARLLCQSVKVRNQRFSS
FT                 SARIIQRQHSRPSARPIRVLFLLLREVIMPIGEGEESKVQLIVPTAGTSHR
FT                 VRAHKAESSKTLSPSIKISRPSRTTSEKSVSSLKSVTLPKTRSTAKMAQAD
FT                 ADIALAKFVTLTDRVSQFEARVNTPADQLPSVHTNKVRLEQIRALWDKVER
FT                 EFETCSAVLSVLKCKDTITVMQSKYDYCYSVFERCAATLSETIESASVQQL
FT                 SQPSTPAPRPSGCRVPPIDCEIFSGDCVHWPTFRDLFFAIYVQNPGLSGVE
FT                 KLFHLNSKTSGEAKSIVALSPLTNEGFESAWRNLQNRFENKRLLVNSQLKI
FT                 LFNLPSVSQECGKSLKHLESTVQGCLTALEIAEVDTTKWDRLLVFLCSSRL
FT                 PKLTLSLWEQSLLQPSEIPGWNDFKVFFTRSSSNPRCLCGSSLSFNHPRFQ
FT                 GGMISRFFLQGRHRTLEAIEEFKPTVAAQSRGPRAESGPRIIHNFENRVTV
FT                 NPQSCRLCSRENHPIRMCPQFQNMPVADREQYIKQQKLCLNCFARTHMLRD
FT                 CTSTHNCYTCKGRHNTLLHRGGPQQLQSAPVPDLQPPLQSASIPDHQQSIQ
FT                 STXSNVQTYLAVNTQGVLLSTALIEICHSGIRYSARALVDSGSEATFISER
FT                 LFNLIKLPYESIQAQVAGVNQTVAAQPRKRCQFNIGSQHRPHIQLEASAYV
FT                 LPHLAGNLPSYTIPEGSATYTTRSLRICVTTFSWKSPILYDTRRFLRDLPN
FT                 LQLADPNFYQSSQIDVLIGADLLPSIILGGFQSNVCGTLLGQETIFGWILC
FT                 GPIAKNPTNRIASFSTRLSVTEAKLDSILTKFXEVEDVPVKLVEESSSVCE
FT                 NNFQQTTKRDEKGRYVVSLPFKEPSNINLGHSRPIALAQFLRNEARLNKNA
FT                 TLKEQYDSVIQEYLDLGHMHLVSPNDGSNNFYLPHHAVFKPDSTTTKVRVV
FT                 FNASNPSSNGYSLNDILHTGPVLQSDLTTQILKWRFFKYVFNADITKMYRQ
FT                 ILVHSDHTRFQRILFRDKEGKLSDYELNTVTFGVNCAPFLAIRVLQQLAQD
FT                 VLDQYPLASDIISRFMYVDDVLAGNHTQQSAVLAIKELRLALESAGFPLRK
FT                 WTSNEKGLLQGIPKDHLISSDFLELEEASMAKTLGIRWQATSDSFFFLPRE
FT                 ISLQTDYTKREVLSQIAKLFDPAGWLSPFIIRAKIFMQEIWLRELSWDQPL
FT                 PTDLVTRWHDFLKGYPALKEIRIPRWVRFHPAAKLQYHGFCDASQSAYGAA
FT                 IFVRVETTDGCFITLLSSKTRVAPVKSISIPRLELCGAVLLSELAAAVLSE
FT                 MPPTHYDTFYWTDSTIVLAWLSKPACTWTTFVANRVARVDQLTNREQWFHV
FT                 KSEDNPADLASRGVSAQELKDSDLWWRGPEWLVHNQEQRPLNVTSLVVGSQ
FT                 PGATATQCNIAIAPPATDILERFSAFERALRVLAYVFRFARRCRKQHVDVK
FT                 AELSATELSDVQERLIVLTQQSEFATESKALSNKLRFPVSSSISNLNPFLD
FT                 SHGVLRASGRLRASEMLSYDEKHPIIIPARCIFAKLLVLFTHRISLHGGNQ
FT                 LVIRLIRSKYWIPKLRNLVKETIHSCRVCTIHKRKLQTQLMGDLPSARSTF
FT                 SRPFTHTGIDFAGPFDIKSYVGRGCKVTKGYVCVFVCFSTRAIHLEATSDL
FT                 TTEKFLAAFSRFSARRGCPHHIHSDNGKTFVGASTSLSKDFIEATRALILS
FT                 KYSLQNVTWHFNPPGAPHMGGYGRQVSKASRHTSTSRRLSGNTHSRNSPKC
FT                 DLALQPARRTSYGGLWEAGVKSFKTHFYKQTAVGKYTFEELTTLLAKIEAC
FT                 LNSRPISPMSEDPTDLVALSPGHFLVGGPLLSVTEPEIKETPISIINRWQR
FT                 LKALHQQFCFRWKEEYLKELHKRTKWQSPMRDVQTGDMVVIKEENLPPNEW
FT                 RLGRIQRVHPGADGLTRVADVNTTRGVIRRPIAKMIRLPMEATDSKLFLLF
FT                 TPPRFIHCQTFLLVLSSCRPLVSVLMHVTVICIIHNTLPLFLSIPTHRVFT
FT                 MAPTSNQHAYRCRVCRGVHALRKCQRFLRLPALKRLRAVLINRYCANCLAH
FT                 EHSGQTCRSKAKCRVCGGRHHTLLHIQEPPVAAPARQQQQQRMSPTMSSRS
FT                 APSDPATGPSCASILQRTSVSILPTASVLVGSNVKWFDARALVDPCCPVSR
FT                 IHVSLAKALNLSVTRVGDKRVCTTEIRSKSSSMGRQLVMLVDDQMQS"
XX
SQ   Sequence 7716 BP; 2085 A; 2009 C; 1660 G; 1959 T; 3 other;
     atatatacct agtcgtcttt tttgccgata ctaattttcg agcataaatt tgtaaaatat        60
     acatcatctt cattcgcacc ttcacacaca tacaagcttt acattttccc gtcggcgctc       120
     acaattaata aaaatcatcc aacgttttat tattattttt tatgtgaaca tttgtgttgt       180
     gcagaaagaa acagggggct tatgcacata ccaaatatca catccacata cacacatacg       240
     taattccaaa attatccaat tttactatta tttttcagtg aatatttgtg ttgtgcagaa       300
     agaaacaggg ggcttatgca cataccaaat atcacatcca catacacacg tattattcta       360
     acatcacaat attttacaca tccgaatatt ttaacatcaa aacataacat aacatccgaa       420
     tattttgaca tcaaaacaat aacaacccgg cttacgcatc tcgctgcgcc aacaggcaat       480
     tataaaagtg gaaaccgcac ttgtcggacg ggcgagttag agggcggcac caacaaacga       540
     tcgcggcatc ccgaaaaaca gaaccctata attataaagg gttatttgtt gttatttagt       600
     agctttgtac tatatcattt ataacaacat tcatttctac atacgtacat attgtattag       660
     tgtgagtgaa attacgcagg gttgcatatc gccttttaga ataagtcagc caattaaggt       720
     gaaccgcgtt tgcaaacaac ccgaagctcg ataaaccttt tccaccttaa aaataacgac       780
     gaaattaatt attcgaggtg tgccacccag aaataaacag cgttccgatt tcacgcgttc       840
     cgcatccatt tctgctgttt gttgtttggt gttattaaaa attacaacag atttaagtat       900
     ttcgaagtgt tccacccaaa aataaattga accatcaaac accggtccga tttcacgcgt       960
     tcccattttt gctgttttgt tttttgaatt tgttaaacat agcaacaaat ttaggtattt      1020
     aaatcggttc atccaaaaac taattaaaac accgaaccgc gttccggctc cacgtgttcc      1080
     gcgtccaggt cttctggtat tatatgattc aacctaccca actatacaca tattttgttc      1140
     caaatatatt ctccaagcac atatccattt tacatcggca gcacaacttc ctagttgatg      1200
     ccttatttcc acttagtctt cggcacgcat tatccagcgc cagcattcac gaccatcggc      1260
     tcgtcccatc cgtgtacttt ttttactcct acgcgaggtt attatgccaa tcggtgaagg      1320
     tgaggaatca aaggttcagt tgatcgtccc aacagctggc acctcacacc gagtcagagc      1380
     ccacaaggca gaatccagta aaactttaag tccctctatt aagatcagcc gtccatccag      1440
     gacaacaagc gagaagtccg tatcttctct aaaatccgta actctgccaa aaacgagatc      1500
     aactgcaaaa atggctcagg ctgacgctga catagctttg gcaaaattcg tgactttaac      1560
     cgacagagta agtcaattcg aagccagagt caacacccca gctgaccaac ttccgtccgt      1620
     tcacacaaat aaggtccgac ttgagcagat acgggctctc tgggacaagg tggagagaga      1680
     gttcgagacg tgctctgcgg tcctctctgt attaaagtgt aaagacacga ttacagtcat      1740
     gcaatctaag tatgattact gttactcggt cttcgaacga tgcgctgcaa cattaagcga      1800
     aacgattgaa agcgctagcg ttcaacagct tagtcagcct tccacaccgg cgcctcgtcc      1860
     tagtgggtgc cgcgttcccc caatagactg cgaaattttt agtggcgact gtgttcattg      1920
     gccgactttc cgagaccttt ttttcgccat ctatgtccag aatcctgggc tttcgggcgt      1980
     cgaaaagctg ttccatctca actcgaaaac gagtggtgaa gcaaagtcca tcgttgcgct      2040
     atctccttta accaacgaag ggtttgaatc agcatggagg aacctgcaga atcgttttga      2100
     aaacaagcga ctgctcgtca acagccagct taagattctg ttcaatcttc cctctgtttc      2160
     ccaagaatgt gggaaatcct taaagcacct ggagagcaca gtccaagggt gtttgacagc      2220
     cttggaaatc gccgaggtag acaccaccaa atgggatcgt ctgctcgtct ttctgtgctc      2280
     ctcgaggctg ccgaaattga cgctgtcttt gtgggagcag tctctccttc aaccatccga      2340
     gattccaggg tggaatgatt tcaaggtttt ttttacaagg tcgtcatcga acccttgagg      2400
     caattgaaga attcaaacct acggtggcgg ctcaatccag aggcccacga gctgaaagcg      2460
     ggccgcggat tatccacaac tttgaaaata gggtcacagt aaatccacaa tcgtgtagac      2520
     tttgttcaag ggaaaaccat cctatccgta tgtgtcccca gttccaaaat atgcccgtcg      2580
     cggatcggga acagtatata aaacagcaaa aactctgttt gaactgtttt gcaagaaccc      2640
     acatgttgag agactgcaca agtactcaca actgctacac ttgcaaaggt cgccataaca      2700
     ctctcctgca tcgtggcggc ccccaacaac tccagtcagc acccgtacct gacctccaac      2760
     caccattaca gtcagcatcc atacctgacc accagcaaag tatacagtcc actcmatcga      2820
     acgtccaaac gtatctcgcc gtgaacacgc aaggggtcct cctgagcacg gcgctcatag      2880
     agatctgcca ctcgggcata aggtactctg cacgcgcttt agttgactca ggatcagaag      2940
     caacttttat atcggaacgg ttattcaacc taattaagct cccctatgaa tccatccaag      3000
     ctcaagttgc gggagtaaac caaactgttg ctgctcagcc tcgcaagcgc tgtcagttca      3060
     acataggctc ccaacatagg ccacatatac aactcgaagc ctccgcatat gtgttaccac      3120
     atttagctgg aaatctccca tcctatacga tacccgaagg ttcttaaggg acctgcccaa      3180
     cctccaacta gcagatccga atttctacca gagttcgcag attgacgtgc tcataggcgc      3240
     tgatctactt ccatcgatta ttctaggcgg cttccagtca aatgtttgcg gaacactcct      3300
     tggccaagag accatattcg ggtggattct ttgcggccca atcgcgaaga atcccactaa      3360
     cagaatagct tccttctcga cacgattgtc tgtcactgag gctaaactag acagcatcct      3420
     caccaaattt tgsgaggtgg aggatgttcc agtgaagctg gttgaggaat ccagctcggt      3480
     gtgtgagaac aacttccagc agaccactaa aagggatgag aaagggaggt atgtggtttc      3540
     cttgcccttt aaggagccta gcaatataaa cctgggacat tcaaggccta tcgcattggc      3600
     gcaattcctt agaaacgagg cacggctaaa caaaaacgcc accttaaaag agcagtacga      3660
     ctcagtcatc caggagtatt tagatttagg tcatatgcat ctggtctctc caaacgacgg      3720
     ctccaacaac ttttatttgc cacaccacgc ggttttcaaa ccagacagca ccacgacaaa      3780
     ggttcgcgtc gtgtttaacg cctccaatcc atcgtcaaac gggtacagtc ttaatgatat      3840
     ccttcataca ggtccggtac tgcaatctga tttgaccacc cagatcctca aatggcgctt      3900
     ctttaagtac gtcttcaacg cmgacatcac caagatgtac cggcaaattc tcgttcattc      3960
     cgatcatacg cgcttccaaa gaatcctgtt ccgcgataaa gaagggaagc tctccgacta      4020
     tgagcttaac acggtgacct ttggcgttaa ttgtgcgccc tttctggcca ttcgcgtgct      4080
     tcaacagcta gctcaggatg tacttgacca atatccttta gcaagtgaca taatttccag      4140
     attcatgtat gtcgacgacg ttctagctgg caaccacacg cagcagtccg ctgttctagc      4200
     catcaaagaa ctccggttgg ccctcgagag tgcagggttt ccactgcgaa agtggacctc      4260
     aaacgagaag ggactcttgc aaggtatccc aaaagaccac ttgatcagtt ctgacttcct      4320
     tgagttggaa gaggccagta tggcaaaaac cctaggaatc cgttggcaag cgacgtctga      4380
     tagtttcttt ttcctgccga gggaaatttc tcttcaaaca gactacacca aacgagaggt      4440
     tttatcccag atagctaaac tatttgatcc agcaggatgg ttatcgcctt tcatcatccg      4500
     ggccaagatt ttcatgcaag aaatttggct gcgggaatta agttgggacc agcctctccc      4560
     gactgatctc gtcacaaggt ggcatgattt tcttaaaggg tatccagccc tgaaagagat      4620
     tcgcattcca agatgggtgc gatttcatcc agcagcgaaa ttgcagtacc acgggttttg      4680
     cgatgcatcg cagagcgcct atggtgctgc catttttgtc cgtgtcgaaa cgactgacgg      4740
     ctgcttcata accctgcttt catccaagac ccgagttgct ccagtaaagt ccatttccat      4800
     accgcgcttg gaactctgtg gcgcagtgct tctctctgaa ctagctgcag cagttctctc      4860
     cgagatgcct cctactcact acgacacatt ttattggacg gactctacga tagtgcttgc      4920
     atggttaagc aaaccagcat gcacctggac tacattcgtt gccaacagag ttgcgagagt      4980
     tgatcaactc accaatagag aacagtggtt tcatgtgaaa tcggaagata acccggctga      5040
     tctggcaagc agaggcgtct cagcccaaga gcttaaggac agcgaccttt ggtggcgcgg      5100
     gcctgagtgg ttggttcaca accaggagca acggccactc aatgtaacat cgctatagcg      5160
     cctccggcaa ctgacatttt agagaggttt tcagcgtttg aaagggcgct acgtgttctc      5220
     gcttacgtgt tccggtttgc aagaaggtgt cgcaagcaac atgtcgacgt gaaggcagaa      5280
     ctctctgcaa cagagttgtc tgacgtccaa gagcggctaa ttgtgctcac tcagcaaagt      5340
     gaatttgcaa cagaaagcaa ggccttgagc aacaagctac gatttccagt ctcaagcagc      5400
     atctccaatt taaacccctt tctcgacagt cacggtgtct taagagcaag cggacgttta      5460
     cgagcgtctg agatgctaag ttatgatgag aaacatccaa tcatcattcc agcaaggtgt      5520
     atttttgcaa aacttcttgt cctttttacc catcgcatat ccttacatgg gggtaatcag      5580
     ttggtgatcc gactgattcg ttccaagtat tggattccta agctgaggaa tcttgtaaag      5640
     gaaaccattc actcttgtcg agtgtgcacc atccacaaaa ggaagctgca gactcagctg      5700
     atgggagatt tgccctctgc gagatccaca ttttccaggc ctttcactca cacgggcatt      5760
     gatttcgcgg gaccatttga cattaaaagc tatgtcggtc gaggttgcaa ggtaacaaag      5820
     gggtatgttt gcgtttttgt atgctttagt acccgagcta tccatctaga agctacgtca      5880
     gacttaacca ctgagaagtt tctggcagcc ttctcgcgct tctccgcccg acgtggctgt      5940
     ccacaccaca tacactctga caacggcaaa acgttcgttg gagcctcaac gtccttatcc      6000
     aaggatttca ttgaagccac gagggcattg atactttcca agtatagtct ccaaaatgtg      6060
     acctggcact tcaacccgcc cggcgcacct catatggggg gctatgggag gcaggtgtca      6120
     aaagcttcaa gacacacttc tacaagcaga cggctgtcgg gaaatacaca ttcgaggaac      6180
     taactaccct cctagcaaaa attgaggcct gtttaaactc gaggcctatt tctccaatgt      6240
     ccgaagaccc cactgacctt gtagctctca gccccgggca cttcttagtg ggtgggccgc      6300
     tcctctccgt gaccgagccc gagattaaag aaacccccat ttccattatt aaccggtggc      6360
     agcggctaaa ggccctacat cagcagtttt gctttcgatg gaaggaagag tatttgaagg      6420
     agctccacaa aagaactaaa tggcaatccc caatgcgaga cgttcagacg ggggatatgg      6480
     tggtgatcaa ggaagaaaac ctaccaccaa acgagtggcg tcttgggcgg atccaacgtg      6540
     tgcatccagg cgcagatggc ttgacccgag tggcagatgt caacaccaca cggggcgtca      6600
     tccgacgacc aatcgcgaag atgatccgtc tcccgatgga ggccactgat tccaagtgac      6660
     tcttcctttt gttcacgcct cccagattta tccactgtca gacgttctta ctagtcctaa      6720
     gttcatgtcg tcctctggtg tctgtcctta tgcatgtcac agtcatctgc atcatccata      6780
     acacattacc tttgttttta tctattccca cacacagagt gtttacgatg gcgccaacca      6840
     gcaaccaaca cgcttacagg tgccgcgttt gcagaggagt tcacgccttg agaaaatgcc      6900
     aacggtttct ccgtcttccg gcccttaagc gactccgcgc tgtccttatt aatcggtatt      6960
     gcgccaactg ccttgctcac gagcattcgg gccaaacctg ccgaagtaag gccaagtgcc      7020
     gcgtctgcgg tggaaggcat cacaccctct tgcacatcca agagccccca gtcgccgcgc      7080
     cagcacgaca acagcagcag cagaggatgt cgccgacaat gtcgtcacgc tcagcgccca      7140
     gtgaccctgc tacaggccca tcgtgcgctt ctatcctgca gcgcacgagt gtgagcatcc      7200
     ttccaacggc gtcggttttg gtcggttcca atgtaaaatg gtttgacgct cgagctttgg      7260
     tggatccatg ctgccccgtg agtcgcatcc acgtatcttt ggcaaaggct ctcaaccttt      7320
     ccgtcacacg cgtgggcgat aaacgagttt gcaccaccga aatccgctcg aagtcgtcaa      7380
     gcatgggccg acaactggtg atgctggttg atgaccagat gcagagctga acgccggcca      7440
     agcccttgac caaaggtccg agatggcttc agaaatgttc atgtcgagcc aggcttggtg      7500
     caacatcgct gtcttgtcat tactgttgcc caagcgggtt aaacctctct ccatataggt      7560
     atggccctta gacctcacgc tatatttttg tacagcaata agaaaagtaa agtgcacgaa      7620
     gcaacaagtg aaatttaaca ccgaacccaa agttttttat tttacacttg gaaagactca      7680
     gcacggcaac gacccgcacc aaaagttgga attgaa                                7716
//
ID   BEL-13_DP-I repbase;    DNA;    INV; 5493 BP.
XX
AC   super_2;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DP_;
KW   BEL-13_DP-LTR; BEL-13_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5493
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1481-1481 (2012).
XX
DR   Genome; super_2; Positions  267258  261766.
XX
CC   'GGTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           258..3170
FT                 /product="BEL-13_DP-I_2p"
FT                 /translation="MDESNDVPENRVSFYKLKALSIYNKAVSLRETILNDE
FT                 NNPISEDALSVHLKFLEKISDSFNVTHSNLEELDVSEIGSDLSNNFEDLAM
FT                 EIEVRIRSALRRTTQNMPHHSTIRPELNVTASGNVRSRYHIPDIKLPTFRG
FT                 GYTEWADFYSMFSTVIDQEPFLSKIEKFQHLRSCLDGPALEAVRSLEVSES
FT                 NYDIALDILNNRFNNKRLIFQAHVAEILRHEKVEDGSTTKLRTLSDKLHSH
FT                 MRALRSMGTMEEIAGCIIVHSTYKYLDSDTRTKWEELSPPNVIPTWDHFSA
FT                 FLERRCQAMETMDQAMSIQIHSSQVGKHKRITHSKHSLVATNTIVLECVFC
FT                 DNKGHNIYSCTRFGNLSPSLRLREARKLRVCFNCLKKGHRNTSCSSGSCRT
FT                 CGEKHHTLLHINNPLPTSVNTEPANATTSPIQTDLCPGPNLSSSLVAASSP
FT                 CSPPAQNLSSDVVLLATTVIMIKSRVGDLLPCRALLDSGSQINLITSRFAQ
FT                 RLQLKRAKGSVSVSGIGADSAFHTEGSVNLVIQSRTSDYFTSLTALVAPRI
FT                 TGNQPASSFDVSKWEMPSNISLADPHFNKSQRIDVLIGASLFYDILCVGQI
FT                 KLERGLPIIQKTRLGWVVTGGGQYSRSSVLLAASSSTELSQTPTVGLDELV
FT                 RRFWEVENCHGPATEATKEEIACEEHFKKHCGRLPSGEYCVQLPLKLSDSL
FT                 LGDSYQQAYRRFLNLERKLVRKPLLKAQYAAFIKEYVDLNHMSPVKSDALK
FT                 QCKFFLPHHCVLREDKTTTKLRVVFDGSACTSTGYSLNDILMSGPTIQPKL
FT                 VTTLLRFRTFRIALTGDICKMYRCVRVSPQDSFLQCILWRDSPLEELRTFK
FT                 LDTVTYGTKPAAFLAVRSMHQLAADESSSYPIGSEVVLRDFYVDDLLTGGD
FT                 TTNEVLEIIRQVSGLLAKGNFKIRKWCSNDTYVLDQTPHEDRETFVKFTDG
FT                 SDVTKTLGLAWESHFG"
FT   CDS           3400..5493
FT                 /product="BEL-13_DP-I_1p"
FT                 /translation="MQQISFPRLSFLRSSNLEMHGFCDASMSAYGACIYAV
FT                 SQGDNGVKANLLSSRSRVAPLKTITIPKLELCGAALLAQLMHEVSLMNFKC
FT                 SYYCWCDSTVVLAWIKNQPSNFNVFVANRLSVIQELTSGMSWLHVPTDLNP
FT                 ADMLSRGSLPAELINSQLWKYGPTYLTASKDQWPSTPALPEPVLEARKTIL
FT                 ITNCASRYLVEESKFVNSFPKMQRIFAYVCKFIHRRKSGITVEDLRLGTEL
FT                 LIRLTQQSRLSTEIRALETRKDIKASSSIASLSPFLDDCGLLRVGGRLKNS
FT                 TLDFEARHPIILPKNHSITSALIRHLHEKHLHAGPQSLLAIIRQTYWPIGG
FT                 RKTVAHVIQKCVRCFRVKPRTLEQIMADLPVDRVSESRAFLVTGVDYCGPF
FT                 LYKSEVRNRPPLKCYMSIFICFSTKAVHIELVKDLTTAAFLSALRRFICTR
FT                 GRPIRIWSDNATNFVGARNELAELKSLFLSDSHQEAVHQAFLNDCIDWRFI
FT                 PPRSPHFGGLWEASVKLAKHHLRRALGSSLLGFDELRTLACNICAIINSRP
FT                 LFPLSENPADLDVLTPSHFLVGSPITTFLEPDLVHLNVDRLDRWQKVTQLQ
FT                 QIFWSRWRQSYLTSLQERTKWRTRNPELHVNDVVLVKDENFPPLKWPLARI
FT                 LELIPGADGVSRVALIRMATGVSRRALAKLCLLPLRDEVKGMDPSTGGV"
XX
SQ   Sequence 5493 BP; 1477 A; 1306 C; 1190 G; 1520 T; 0 other;
     tttggtgacc ccgacgtgat cgtcagtaac aatttggaaa taaacaatta taaacagtga        60
     aaattatccg ctaaacataa ctgttcgaac gcgaagcggt tagttcccat ttcgtcgcgc       120
     gcttgcttac aagcactaat acagctacgt gcattagcgg cttcgggttc gctgcacttg       180
     cgcttgcata ccaaaaaaaa tcaaatggtt ggttcttcta ttcttctttg tgctttgctc       240
     gctgctgcct gtcgaaaatg gatgagtcta atgacgtgcc ggaaaacagg gtgtcttttt       300
     acaaactaaa ggcactctca atatacaaca aagccgtttc acttcgagag acgatattga       360
     atgatgaaaa caacccaatc agtgaagatg cgctaagtgt tcatttaaaa ttcttggaaa       420
     aaatatccga ctcatttaat gttactcatt ctaatttaga agagcttgat gtaagcgaaa       480
     ttggcagcga cttaagcaac aattttgagg atttggcgat ggaaatcgaa gttcgtattc       540
     gctcagcact ccgcaggact acccagaaca tgccgcatca ctcaacgata cgacccgagc       600
     tcaacgttac tgcctccgga aatgtacggt cacgatatca tattcctgac attaaacttc       660
     ccactttccg tggaggttat actgagtggg cagactttta ctcgatgttt agcacagtaa       720
     tagatcagga gccctttcta tcaaagattg agaagttcca gcacctgcgc tcatgtttgg       780
     atggacctgc cctggaggct gttcgctctt tggaagtatc ggagagcaat tatgatattg       840
     cattggacat tttaaacaat cgtttcaata ataaacgttt aatctttcag gcacacgtcg       900
     ctgagattct gaggcatgag aaggttgaag atgggtcaac tacaaagcta cgtactttat       960
     cggacaagct tcattctcac atgagagcgc ttagatcgat gggtaccatg gaggaaatag      1020
     ctggatgcat catcgttcac tccacataca agtatctcga ctctgatacc aggaccaaat      1080
     gggaggagct gtcaccccct aacgtcatac caacatggga ccatttttcg gcttttttgg      1140
     agaggagatg tcaagccatg gagaccatgg atcaagctat gtcgattcaa atccatagca      1200
     gtcaggttgg aaaacataaa cgaatcactc attcaaaaca cagtcttgtt gctacaaata      1260
     caatcgtatt ggaatgcgtg ttctgtgata ataaagggca taacatttac agctgcactc      1320
     gctttggaaa cctttcgcca tctttgcgtc ttagagaggc aaggaagctt agagtttgct      1380
     tcaactgttt gaagaaggga catcggaata cctcctgcag ttcaggctct tgtcgcacat      1440
     gcggtgaaaa gcatcatacc cttttacata tcaacaatcc gctgcctacg tcagttaaca      1500
     cggaacctgc aaacgctact acgtctccta ttcagacaga cttatgccca ggccccaatc      1560
     tttcaagttc tcttgttgcc gcttcatcac catgctcgcc tcctgctcag aatcttagct      1620
     cagacgtagt gcttctagcc acgacagtca ttatgataaa gagtcgagtt ggtgatcttc      1680
     ttccttgccg ggctcttctg gattcaggct ctcagattaa tttaataacc tctcgctttg      1740
     ctcagaggct tcagctgaaa cgagccaaag ggtcggtatc agtatcgggt atcggcgctg      1800
     attctgcatt tcacacggaa ggttcagtta atttggtcat tcaatccagg acttccgatt      1860
     acttcacgag tctcacagct ctcgttgctc cacgtattac aggaaaccag cctgcttctt      1920
     catttgatgt atccaaatgg gaaatgccat ccaatatcag ccttgctgac ccacacttta      1980
     acaaatctca gcgcatcgat gtacttattg gagccagctt attttacgac attttatgcg      2040
     ttggacagat caaattggaa aggggacttc ctataataca aaaaacccgt ctcggctggg      2100
     ttgtcacagg tggaggtcag tactcccgca gctcagtgct cctagctgcc tctagttcga      2160
     cggaattgag tcaaacgcct accgttggtt tggatgagct agtgcgaagg ttctgggaag      2220
     tggaaaactg ccacggtccc gctacagaag caacaaagga ggaaattgct tgcgaggaac      2280
     atttcaaaaa acattgcggt cggcttccaa gtggcgaata ttgcgttcaa ttgcctttaa      2340
     agctgagtga cagtcttctt ggagattctt atcaacaagc ctatcgcaga tttctcaatc      2400
     tagagcgcaa gttggttcgc aaaccgcttc tcaaggccca atacgccgca tttataaagg      2460
     aatacgtcga tttgaatcac atgtcccctg tcaaaagtga cgcacttaaa caatgcaaat      2520
     tttttcttcc tcatcactgc gtcttaagag aagacaaaac caccacaaaa ctccgagtag      2580
     ttttcgacgg atccgcttgt acatctacag gatattccct caacgatata ttgatgtcag      2640
     gcccaacaat tcagccaaag ttagttacga ctcttcttcg atttcgtacc tttcgtatag      2700
     cattgactgg tgacatttgt aaaatgtata gatgcgtccg tgtctcgccc caagatagtt      2760
     ttctgcagtg catactgtgg cgtgactcac ccctcgagga gctaaggaca ttcaagctgg      2820
     ataccgtgac ctatggaacg aaaccagcag catttctggc cgtccgttct atgcaccaac      2880
     tagcggcaga cgagagttcg tcatatccaa ttggctctga agttgtgctg cgggactttt      2940
     acgtggatga tttgctaacg gggggagata ctacaaatga ggtgctggaa ataattcgcc      3000
     aggtgtcagg actattagcc aaaggaaatt tcaagatcag aaaatggtgt tccaacgata      3060
     catatgtact cgatcaaaca ccccatgaag atagggaaac atttgttaaa tttactgatg      3120
     gcagcgatgt aaccaagacg ctaggtttag catgggaatc ccacttcgga tgagctatta      3180
     ttttcattct gtcccaatca agtcccttcg aaaccaacta agcgagttgt attgtcaact      3240
     attgcacgat tttatgatcc actcggactt atagggccag ttattactaa agcaaaaata      3300
     tttctacagc agctgtggaa agaaaagctt cattgggatg aaagtctgcc agtctcctta      3360
     cgcacaactt ggatcaactt tattcagcag tttgactcta tgcaacaaat ttctttcccg      3420
     cgcctatctt tccttcgaag cagcaacctt gaaatgcatg gattttgtga tgccagcatg      3480
     agtgcttatg gagcttgcat ctacgctgtt tcgcaaggcg acaatggagt caaggcaaat      3540
     cttctatctt ccagatctcg tgtagcgcca ctgaagacta tcacaatacc caagttggaa      3600
     ttatgtggtg cagcgctact cgctcagctt atgcatgaag tgtctttgat gaacttcaag      3660
     tgctcttatt attgctggtg tgactccaca gtcgttttgg cttggatcaa aaatcaacca      3720
     tccaacttca atgtatttgt cgctaataga ctttctgtta ttcaggaact cacatctgga      3780
     atgtcttggc tgcacgtgcc aactgatcta aaccctgccg atatgctttc tcgaggatca      3840
     ttaccagctg agctcatcaa ttctcaactt tggaagtatg gacctacata cttgacagcc      3900
     agtaaggatc aatggccaag tacacctgct cttccagagc cggttttgga ggcacgaaaa      3960
     accatactaa ttacaaactg cgcgtcaaga tatttggtgg aagaatcaaa gtttgtaaat      4020
     tccttcccca aaatgcaacg aatttttgcg tatgtatgca aattcattca tcgacgaaag      4080
     tctggaataa ctgtggagga cttgcgtttg ggaaccgaac tgcttattcg tcttactcaa      4140
     caatctcgtc tatccactga aataagagcc ctggaaacgc gaaaggacat caaggcttca      4200
     agctcgatcg cctctctttc gccattttta gatgattgcg gtttgcttcg agttggaggg      4260
     cgtcttaaaa actctacctt ggactttgaa gcacggcatc ccataatatt gcccaagaat      4320
     cattccatca cttctgctct gatacggcac ttacacgaaa agcaccttca cgctggaccc      4380
     cagtcgctat tagccatcat tcgtcaaacg tactggccaa tcggtggccg aaagaccgta      4440
     gcacacgtaa tccaaaagtg tgtcagatgc tttagagtga agcctcgaac tctcgagcaa      4500
     ataatggcag atcttccggt ggacagagtc agcgaatctc gtgcattttt agttaccggc      4560
     gtggactatt gcggtccgtt cctgtataaa tcagaagttc gaaaccggcc cccactaaag      4620
     tgctacatga gcatttttat atgcttctcc accaaggcgg ttcacatcga gcttgtgaag      4680
     gatcttacaa cagctgcgtt cctctctgct cttcgccgtt tcatttgcac ccgtggaaga      4740
     ccgattcgta tttggtcaga taatgccaca aattttgttg gagcgcggaa cgaactggcg      4800
     gaacttaagt cgctattcct aagcgacagt catcaagaag ccgtgcatca agcttttctc      4860
     aacgattgca ttgattggcg tttcattcct cctagatcgc cacattttgg aggattgtgg      4920
     gaggcgtcag tcaagcttgc taagcatcat cttcgacgtg ccctcggatc ctcgcttctt      4980
     ggatttgatg agctgcgcac tctcgcgtgc aatatctgtg caatcattaa ttcaaggcca      5040
     ttgtttcctc tttcagagaa ccctgcagat ctcgatgtac tcacgcccag ccattttcta      5100
     gttggctccc ctatcacaac cttcttggag cctgacttgg ttcatttaaa cgtcgatcgc      5160
     ttggaccgtt ggcagaaggt cacacagctt cagcaaatct tttggtctcg ctggcgccaa      5220
     tcgtatttaa ccagtcttca agaaagaacg aagtggcgca cccggaatcc tgagcttcac      5280
     gtcaatgatg tcgttcttgt taaggacgag aacttccctc ctctgaagtg gcctctagcg      5340
     agaatcctcg agctcatccc aggagctgac ggcgtatctc gagtcgcctt gatcaggatg      5400
     gctacaggtg ttagccgaag agcacttgca aaactatgtc tattgcctct acgagatgag      5460
     gtgaaaggca tggatccttc cacgggggga gta                                   5493
//
ID   BEL-13_DP-LTR repbase;    DNA;    INV; 476 BP.
XX
AC   super_2;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DP_;
KW   BEL-13_DP-I; BEL-13_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-476
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1482-1482 (2012).
XX
DR   Genome; super_2; Positions  261765  261290.
XX
SQ   Sequence 476 BP; 124 A; 113 C; 74 G; 165 T; 0 other;
     tgttcgggcg aagcccgagt gtaaatttta taccattgtt ttattgccta tcaattcact        60
     ttcttttcta ttttggtcat tatactaaac taacgtaacg taagcgtagc tttatctatg       120
     ctcgctcagc aacatgctct catttaatca tctattctta tctatgctcg ctcttgttat       180
     cttttctttc ctatgccgtc gctaagccgt cagcagctgc gcctgctcta acagttaccg       240
     cttgatatag ttggagaaca gacccttttt gtccccaatc tattactttg gctcgagatc       300
     ggctcgcttg cctcatccaa gtgtgtcact ctaatactat tgtaaaaggc tctggcatct       360
     tcggccaccc tcaacacaca aaatacctat aataaaattt ataacgtttt cggaaattaa       420
     taatttgtga aattattgaa caatcatagt cagcgaaaaa gctcgttgtc tcaaca           476
//
ID   BEL-13_DTa-I repbase;    DNA;    INV; 5845 BP.
XX
AC   AFFI01004963;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DTa_;
KW   BEL-13_DTa-LTR; BEL-13_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5845
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01004963; Positions     333    6177.
XX
CC   Positions [4945-5412] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           244..4902
FT                 /product="BEL-13_DTa-I_1p"
FT                 /translation="MHHSPRRSNRLNEEQGTPVSTSAGQTPGSSGAGSKPA
FT                 KKKVVATTAPLIPSQTTAITVTASQPGSVVTTVGGTASGQFRPPPVLDLLE
FT                 RIAALEKELENVRARNNFSAGDSINVGEGGVGNAASGPPPSLFEPPSLTSS
FT                 NGIPHNGVGTSSTAHVAPPSWSGPALIASSSHHPPYCATSTAQAAHGFAPL
FT                 GVSIQNIMTPTSIAGSYACMTPNGNYMPRKLPDLPVFGGQPEDWPIFYCAF
FT                 TETTQAYNCTDLENNQRLLKALKDEARETVKSLLIHPRNVSAVVEQLRFRY
FT                 GRPEQLIRSQLSGIREVAPISEHNLAKIVPFATRVSNLTAFLQSAKADQHL
FT                 GNPTLMEDLVAKLPTSKRVEWARHAATITPFPTIVHFSAWLTEYANVVCTI
FT                 VDVEGKEPRRRLLHASIDHDQGDQQGRPRSCPICGGQHAVRDCREFIGASP
FT                 PDRWRYVRRHRLCFTCLQSGHMTRSCNSHGECQFNGCRQRHHSMLHQADSQ
FT                 RRRSPQQGSDRRYNEGNQQSAVSRRTQNGGTPQPAETPVERNLSCVDAEGG
FT                 RLLFRILPVTLYGAGRRVDTYALLDEGSSVTMIDDELRRDLGVQGERRQLN
FT                 IQWFGGRATRQPTNVVSLQISGLGKQVRHALRSVYSVPDLSLPMQTLHRRD
FT                 VQGVHKDARLPMRPYSNVVPKLLIGLDHGHLGLPLRTRRFARQGPYAAATE
FT                 LGWVVFGPVSGQSISPSPMSCLLTVPTDDTVQRMVEDYFDIENFGVKLAPP
FT                 VAGSDDVRAQRILEDTTVKVGPRYQTGLLWKDDHIVLPPSYDMAYKRLVNV
FT                 EKKMKRNGQFAQAYSRIIKDYVSKGYARRLEPNEVAVESDRLWYLPHFGVE
FT                 NPNKPGKIRLVFDAAAKAKGTSLNSALDKGPQHFKPLPAVLFHFREGAVGV
FT                 CGDIKEMFHQVLIRPEDRLSQRFLWRDGNDNRDPDVYEMNVMTFGAACSPS
FT                 AAHYVKTVNAKQFEHSDPRAVKAIIDCHYVDDYVDSFATESEAISVSTRVK
FT                 EIHANAGFELCQFLSSSPVVETALGPPGHVRCVGWGESEQKILGMYWQAAT
FT                 DCFKFNVKYHRTPSSVVNGERVPTKREFLSLVMSTFDPLGFLCCLMITAKL
FT                 LLREIWRQKVQWDEPLPDEINKAIVNWRKEMDAVGQFRCPRHYFGRGLVRG
FT                 IELHVFVDASQSAFAAVAYWRVSYEDDDVLVSFVCAKTKCAPMRTMSIPRL
FT                 ELQAAVLGTRLMDAVRLEHSVAINDIVLWSDSKTVLRWIGSTHRRYKQFVG
FT                 NRVAEILESTKVTQWRWVPTADNAADDATRSQCHVDLSQQSRWLSGPAFLR
FT                 QPAGSWPQPESGIERDLDINDVEEVSSEFALVAANDFCISFQRFSSYTRLL
FT                 RTTAWVLRFTRRCRRQRSEPEEYGITAAECDAAENLLVRQAQREAFPDEMR
FT                 ATEDCKAVANGSDIRGLMPYIDERGVLRAYGRVDAALCMPYSARRPIILSH
FT                 RHSLTEMIVYHFHDKMKHQNVDATIAEIRMRFWVTKLRRVLRKVTSACNVC
FT                 KLQRARPVPPMMGSLPEDRLEANGWPFKNTGLDYLGH"
XX
SQ   Sequence 5845 BP; 1455 A; 1411 C; 1784 G; 1195 T; 0 other;
     gcgacatggt cttttattcg cagtcctaga agtcgactgc aagacgcgga cagcgtaagg        60
     cgcgtgcagc gcagagacac gcggacagcg tagacacgcg ggcagcgtaa ggcgcaggca       120
     gcgcagagag agacgtgggc accgtcggaa cgcgtacagc gtaaggcgca ggcagcgcag       180
     agaaagacgc gggcagcgtc ggaacgcgga cagcgttagg atttgtttaa gttcctgggc       240
     aggatgcatc attcccccag acgaagtaac cggttgaacg aggagcaggg cactcctgta       300
     tcaactagtg cgggtcagac acccgggagc agtggcgcgg gaagtaagcc ggctaagaag       360
     aaggtagtag ctactacggc gccgctgatt cctagccaaa ccactgcgat caccgtgaca       420
     gcctcccagc ctgggagtgt tgttaccacg gttggaggca ccgcatcagg acagttccgg       480
     ccacctccag tgttggatct cttggagaga atcgcagcgt tggagaagga gctggaaaac       540
     gtaagagctc gcaacaactt tagtgctggc gattcaataa acgtcggcga aggcggcgtg       600
     ggtaacgccg cgtcagggcc gccgccatct ttgttcgaac cgccatcttt gacgagcagt       660
     aacgggatcc cacataacgg ggtcggtacg agcagtacgg cacatgtggc gccgccatct       720
     tggagcgggc cagcactgat agcaagtagc agtcatcacc ccccatactg tgcaacaagt       780
     acggcgcagg cagcgcatgg gtttgcaccg ctgggtgtga gcatccagaa catcatgacg       840
     ccgacgtcaa tagctggatc ttacgcctgt atgacgccga atgggaacta catgccacgc       900
     aagcttcctg atctgccagt atttggtggt cagccagagg actggccgat cttctattgt       960
     gcgtttaccg agacaactca agcgtacaac tgcacggatt tggagaacaa ccaacgcttg      1020
     ctgaaggcgc tgaaggatga ggcacgtgag accgtcaagt ctctcctgat ccatccaagg      1080
     aatgtcagcg ctgtggtaga gcagctgcgc tttaggtatg gccgaccgga gcaacttatt      1140
     cgcagccagc tgagtggtat tcgagaggtc gcccccattt cggagcacaa cctggcgaag      1200
     attgtaccct tcgcaacccg tgtgagtaac ctcacagcct tcttgcagtc agcgaaggca      1260
     gatcagcatt tggggaatcc aacactaatg gaagaccttg tggccaagct ccctaccagc      1320
     aagcgtgtgg agtgggcaag gcatgctgcg acgattacac ccttcccaac cattgtgcat      1380
     ttcagtgctt ggttgacgga gtacgcgaat gtagtgtgta ctatcgtgga cgtcgaaggg      1440
     aaagaaccga ggcgtcgatt gctgcacgca agcatcgacc atgaccaagg cgatcaacag      1500
     ggtcgcccca gaagttgtcc aatttgtgga ggacaacatg cagtcaggga ctgcagagaa      1560
     ttcattggag cttcgccgcc ggacaggtgg agatatgtga gaaggcatcg attatgcttt      1620
     acttgcctac aaagtggtca catgactaga tcctgcaact cgcatggtga gtgtcaattt      1680
     aatggatgcc ggcagaggca tcacagcatg ctgcatcagg cggacagcca acgcagaaga      1740
     tcgccgcaac aaggcagcga tagaaggtac aacgagggaa accagcagtc agcagtttcc      1800
     aggcgtaccc agaacggagg aactccgcag ccagcggaga ctcccgtaga gaggaattta      1860
     agctgtgtcg acgcagaagg aggccgtcta ctgttccgta tattaccagt cacactgtac      1920
     ggggctggtc gacgagtgga tacgtacgca ctcctggatg agggatcgtc cgtaacgatg      1980
     atcgacgacg agctacggag agaccttggg gttcaaggtg agcgccgaca acttaatata      2040
     cagtggtttg gaggtagagc aaccagacag cctaccaacg tcgtgagtct gcaaatcagt      2100
     ggattgggca agcaagttcg ccatgcgttg cgaagcgtgt attccgttcc ggatctgagc      2160
     ttgccgatgc agaccctaca ccgacgagat gttcaaggcg tgcataagga cgcacgactg      2220
     ccgatgagac cctacagcaa cgtggtgcca aagttgctga ttgggcttga tcacggacac      2280
     ttgggattgc cactacgaac gcgacggttt gccagacagg gaccgtatgc ggccgcaacc      2340
     gagctgggct gggttgtctt tgggcccgta agtggacaat caatttcgcc atcaccgatg      2400
     tcctgccttt taaccgtgcc aacagatgac acagttcaga ggatggtgga ggactacttc      2460
     gatattgaga actttggtgt gaagctcgcg ccaccagtcg caggcagcga tgatgtgcgg      2520
     gcacaaagga tactcgaaga cacgacggtg aaagtgggcc cacgttacca gacaggttta      2580
     ctatggaagg acgaccacat tgtgctgcca ccaagctatg acatggcgta caagcggttg      2640
     gtcaatgtcg agaagaagat gaagcggaac ggtcagttcg cgcaggccta cagcaggatc      2700
     atcaaggatt acgtgtctaa aggatacgct cgacgattgg agcccaacga ggtcgcggta      2760
     gaaagcgaca ggctatggta tttgcctcac tttggagtcg aaaacccgaa taagccaggc      2820
     aagattcgat tggttttcga cgctgcggcc aaggctaaag gaacatcgct aaactcggcg      2880
     ctggacaagg gaccgcaaca tttcaaaccg ttgccagccg tactctttca ctttagagaa      2940
     ggagccgtcg gagtttgtgg ggacatcaag gaaatgttcc accaagttct gatccgaccc      3000
     gaggatagac tatcccaacg cttcctgtgg agagatggca acgacaacag ggatcctgat      3060
     gtctacgaga tgaacgtgat gaccttcgga gcagcctgct cgccaagtgc tgcgcattac      3120
     gtgaagactg tgaatgccaa acagtttgag cattcggatc cgagagcagt caaggccatc      3180
     atcgattgtc attatgtgga tgactatgtg gacagctttg ctaccgagag cgaagccatc      3240
     agcgtatcta cccgagtgaa ggagatacat gcgaacgctg gattcgagtt atgccagttt      3300
     ttatccagtt cacccgttgt ggagacagca ttgggtccac caggacacgt gaggtgcgtc      3360
     ggatggggtg agtctgaaca gaaaattctg ggaatgtatt ggcaggcagc cacggattgc      3420
     ttcaagttta acgtgaagta tcatcgaact ccgagcagcg tagtaaacgg agaacgagtc      3480
     cctaccaaga gggagttttt gagcttggtt atgtctacgt ttgatcctct gggatttctt      3540
     tgctgtctca tgataacagc caagttgctg ttgcgagaga tctggaggca gaaagtgcag      3600
     tgggatgaac cactaccgga tgagatcaac aaagccattg tgaattggcg taaagagatg      3660
     gacgccgtgg gacagttccg atgtcctcgc cattattttg ggcgcggact tgtacgggga      3720
     atagagttgc acgtcttcgt ggatgcgagc caatcagcct tcgcggcagt ggcctactgg      3780
     agggtctctt atgaggacga tgacgtgcta gtgagctttg tatgtgccaa aacaaagtgc      3840
     gctccgatgc gaacaatgtc aatcccacgg ctggagctgc aggcagcagt tcttggaaca      3900
     agactgatgg acgctgtcag gctggaacac agcgtggcca tcaatgatat tgtgctatgg      3960
     tcggactcca agacggtgct tcgatggatc ggcagcacac atcgccgtta caaacagttt      4020
     gtcggtaatc gtgtggccga aatcttggag tcgacgaagg taacccaatg gagatgggtg      4080
     ccaacagccg acaatgcggc ggatgatgca acgcgttcgc aatgccacgt ggacctcagt      4140
     cagcagtcac gatggctaag cggaccggcg tttttgaggc agccagcggg tagctggcca      4200
     cagcctgaat ctggaattga acgagatctg gatataaacg acgtcgagga agtctcaagt      4260
     gagtttgcgc tggtcgccgc aaacgacttt tgtatttcat ttcagagatt ctcgagctac      4320
     actcggctac tcaggaccac agcctgggtc ttaaggttta cgcgccggtg tcgtagacaa      4380
     agaagcgagc ccgaggaata cggaattacc gcagcagagt gtgatgcggc ggagaacctg      4440
     ttggtcagac aggcgcaacg agaggcattt cccgatgaga tgcgggcgac agaggattgc      4500
     aaggccgtcg ccaatggaag cgacattcga gggctgatgc cctacataga tgaacgcggc      4560
     gttctacgag cctacggtag agtggatgcc gcactgtgca tgccgtacag tgcgaggagg      4620
     ccaataatcc tgtcacatcg acacagtctt acggagatga ttgtgtacca ttttcacgac      4680
     aagatgaagc atcagaatgt ggatgcgacg attgctgaga tccggatgag attctgggtc      4740
     acgaagctga ggcgagtcct acggaaggtg acctcagcat gtaacgtgtg taagttacaa      4800
     cgagcgcggc cggtgccgcc gatgatggga tccctcccgg aggatcgctt ggaggccaac      4860
     ggatggccgt ttaagaacac tggactggat tatttgggcc attaatggta actgtggctc      4920
     gacacaagga gaagcgatgg gtagcctgtt cacgtgcttg acgaccaggc gatacatctg      4980
     gagttggcgc atgacctgtc gacggattcc tgcataattg cgatcaggaa tttcgtctgc      5040
     cgtagagggc cagtgtacaa gctgcgcagt gataacggca agaacttcgt gggagctgac      5100
     agggaagccc gacgatttgg tgatgtgttc gagccggaaa gaattcaagg agagctctct      5160
     ggcagaggca tcgagtgggt ttttaactgc ccaataaacc catctgaagg aggagtctgg      5220
     gagcgaatgg tgcagtgcgt caagagggtc ctgcgccaca cactgaaaga ggtggcgccg      5280
     cgggatcacg tactggagag tttcctgatc gaggcggaga acatagtcaa ttcgcgtccg      5340
     ctcacccact tgccggtgga tgcggaccag gaggcgcctc tgacgccaaa tgatctactc      5400
     agaggagtag ccaacttgcc agacacgcct ggcggagacg tggagctgcc caaggagtgc      5460
     gctacacgga agcaatggag gatagcccgg ctactgaggg accgtttctg gaagaggtgg      5520
     gtcttggagt acctgcctac acttgtgcgc cgcgagaagt ggtgccggag gacggagccg      5580
     attcgccagg gtgacatggt cttcgtttgc gatccagcct tgccccgaag agagtggtgc      5640
     aagggaatca tcgaggaggt ctatcatgga gtggatggag tcatcagacg cgctagagta      5700
     cgcgtgagcg acaacggcct atctaggatt atgatgcgtc ccgtctccaa acttgcagtt      5760
     ttggatttga gtgaagcggt tcttcacggg gtcggggatg tcgacggacg atagttcatc      5820
     cgataggtct taagattatg accgc                                            5845
//
ID   BEL-13_DTa-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   AFFI01004963;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DTa_;
KW   BEL-13_DTa-I; BEL-13_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-237
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01004963; Positions      96     332.
XX
SQ   Sequence 237 BP; 62 A; 43 C; 66 G; 66 T; 0 other;
     tgaacggtca tatttgagcg gccatgtttg gcgctatgat tttaagcttc cgcattgatt        60
     gtcgcgtggt gaattaagga ggacatactg cggtaagatt agtgaacaga attgtggtag       120
     gttatgttct aagtgaatat ttccagaata aaacggcttt acaacggcag tcagcctgaa       180
     gtaacctttc tactcgcggg gtggaaatcg gccgttaaag gcaactccgt ggggcca          237
//
ID   BEL-13_DWil-I repbase;    DNA;    INV; 5296 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   04-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DWil_;
KW   BEL-13_DWil-LTR; BEL-13_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5296
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1791-1791 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4349-4927] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..5293
FT                 /product="BEL-13_DWil-I_1p"
FT                 /translation="MEKLKATRTKLKSSLTRLLTLSENPPENCTADVVDTM
FT                 MTRLDNVWKEFDRSTDDMFEFQESQGYVDPMGDYGDYEMKYLTAQLHLKEL
FT                 GKLVNPVKATKVVDSSEGVNEVVSQILHKQMELQREFYESMTVSGAACSAL
FT                 GGQVQLPKLHIKPFGGDYLEWPAFKDLYESTIHNRVNLDKAQKFQYLKSFL
FT                 CDEAASLINHLPLTGAAYETAWAGLMERYDRPRHVVNSLLDNFRRLPSTRV
FT                 TDVSVLRKIADGASEVVRGLDALGQTNRDCWVIYFLLDKIDAESQCKWVSY
FT                 SREGTSPTIKDFLRFLGERCDEFELSRCEQVAQSNVKKYTRILISTDSRGC
FT                 LKCESKEHNVYNCDQFLALSVERRYSFAKEKRLCFSCLRPDHGISRCESKY
FT                 RCKHCQDKHHTLLHRQVEEKSINPTAAMIAETKQVKEVQSIESQSYLARSA
FT                 VNQQPRGKPRSVLPTALVLALNSKGSYTTCRVLFDSGSELSYISEHCMRSL
FT                 GLLRSPSRILVSGISSIKADTTRGVSAVHLKSRFSKHTLDITAHVLGKITT
FT                 LLPKDEVDPAVLKVFDGLELADLPETSAKHVDILLGSDYVWSAFTGEKVLD
FT                 KHGNIIAISTIFGWVVTSIAAKQGSNTASLLSTIEINTSLQRFWELEELSG
FT                 SLPPTADDLKVENHFRSTHFRDSNGRYSVELPFKNSDVKFADTLQGATSRF
FT                 YSVERRLQKDKRLKEEYTKFMREYIALGHMRILDESEKTSAPKEHMFYMPH
FT                 HPVIGTKLRIVFDGSYKDKSGRSLNDELLVGPSIQRNLMDVCLRFRLYKFV
FT                 FCADIIKTFRQIWISENHRNYQRIVWRENPTEELQHYQLCTVTYGTACAPF
FT                 LAVRVLEQLAIDLKHKYPTAAKILLEDFYVDDVLTGANTEDQLIRNKDELI
FT                 QLLGRAQLELGKWVSNTHGIGPLEEAAATSVTGDASSVKVLGIHWEPKSDI
FT                 FTYGIRLSECTESSKRQVLSDVSRIFDPLGLLAPVIVQFKILFQELWLLNL
FT                 DWDSPLPTKLADRWRKYREDINNIRQLKIRRHIGYVGKRIELHAFSDASIK
FT                 AYAAVVYSRIVNQDGSIEVSLIAAKTRVAPLKQQSLPRLELCGALLLSRLI
FT                 ASIKLAWKDLESTVYAWCDSTIVLAWLNHLPASLKTFIGNRTAEILEVIPR
FT                 DSWRHVNTKQNPADCASRGMLAEDLLPFTLWWKGPDWLAETHLNLGNEDDI
FT                 QISNLISDDEYRKELKATVLVTLAETMNESSPLEELIGRVSSWPRLVRIVA
FT                 YILRFIRHMKNPQEKSDTFAVTCDEYKAARNLCLQQAQDERHKERKALRNE
FT                 GCVPKGSKLCTLTPILDDSGLLRVGGRLNNSELSYSAKHPLILPRKHRISH
FT                 LILEHEHQHNLHPGVSALFVIVRQRFWIMGARNLIRKVTHNCIKCFRQRAY
FT                 TSNQLMAALPAVRVRQAFPFENTGCDYAGPIMMKTHKGRTARKEKGYICLF
FT                 VCMATSALHLELATDLSTDTFLAALRRFISRRGKCVTMFSDNGRNFVGAKR
FT                 SLNEMEQLVQSQLHNNKIAEALSIEGINWKFIPPHAPHWGGKWESAVRSVK
FT                 LHLHRVIGHAVLTFEQMHTLLTQVEAVINSRPLCATSDTDVGYLSPAHMLI
FT                 GRPYTTVPDGDLDQVPANRLDYWQQSQAMLQGFWKRWHLEYLTSLQQRPKW
FT                 LMKSANPKPDDLVLVKDSHTPPASWILARIIETIPGPDGLVRALKLKTATG
FT                 EMTRPITKVAPLPVSETLFQGPA"
XX
SQ   Sequence 5296 BP; 1550 A; 1160 C; 1254 G; 1331 T; 1 other;
     taaatttggt ccttcgagcc ggatttggat tctgttggga taagcaattc tactcaagtt        60
     taagatggaa aaactaaagg caacacgcac caagttaaag tccagcctca cgcggctgct       120
     nacactttcg gagaatccgc ctgagaactg cacagcggat gtggtggata ctatgatgac       180
     cagactcgac aacgtgtgga aggagtttga tcggtccact gatgatatgt ttgaatttca       240
     agaatcgcaa gggtacgtcg accccatggg tgactacgga gattatgaga tgaagtactt       300
     aactgcacaa ctgcacttaa aggaactcgg aaaattggtt aacccagtaa aagcaactaa       360
     ggtcgtggac tccagtgagg gagtcaacga agtagtgtcg cagatactac acaagcagat       420
     ggaacttcaa cgggagtttt atgaaagcat gacagtaagt ggagctgcct gttcggcgtt       480
     agggggacag gtccagctgc ccaaattaca catcaagcct tttggtggcg actacctgga       540
     gtggccagcc tttaaggatt tatacgagag taccattcac aacagggtga atctggataa       600
     agctcagaag tttcaatatc tcaagtcttt tctctgtgat gaggctgcaa gtttaataaa       660
     tcatttgccg ttaacaggag cggcgtacga gacggcttgg gcaggcctaa tggaacgtta       720
     tgatcgacct cgtcatgtcg ttaactcgct tttggataat tttagacgtc taccatcaac       780
     aagggtgaca gatgtatccg ttctacgaaa gattgccgat ggggcgagtg aagttgtacg       840
     tggcctagat gcacttggcc aaactaatcg cgactgctgg gtgatctatt ttctactgga       900
     taaaattgat gcagagtctc aatgcaaatg ggtgtcctac agccgtgagg ggacatctcc       960
     aaccattaag gattttctta gatttctcgg agaacgttgc gatgagttcg aattaagccg      1020
     ctgcgaacaa gtcgcacaat caaacgttaa gaaatatact cggatactga tttccacaga      1080
     ctcaagaggg tgtcttaaat gtgagtctaa ggagcataac gtatacaact gtgaccagtt      1140
     cttggccctc tccgtggaga ggcgttactc atttgctaag gagaaacgtt tgtgtttcag      1200
     ttgtctaagg cctgaccatg gtatttcaag atgtgaatcc aagtatagat gcaaacattg      1260
     tcaggacaaa caccacacgc tgttacatcg ccaagtcgaa gaaaagagca ttaatcccac      1320
     agcagccatg attgccgaaa ctaagcaagt aaaggaagtc caatctatag aatcacagag      1380
     ttatttagca cgttctgcgg taaatcaaca gccgcgagga aaaccaagga gtgtattgcc      1440
     cacagctcta gttttggcat taaattcaaa gggatcatac accacttgtc gtgttctctt      1500
     tgatagtgga tcagaactat catacatatc ggagcattgc atgcgatcac tgggcctctt      1560
     acgctcacca tctcgaatac ttgtctcagg aatttcgtca atcaaggccg atactacaag      1620
     aggggtcagc gcagtacatt tgaaatcaag gttctcgaag catacactag atattacagc      1680
     tcatgtctta ggtaagataa ccactctatt gccaaaggat gaagtcgacc cggccgtttt      1740
     gaaagttttc gatgggttag aactggctga tctaccggaa accagcgcta agcatgtgga      1800
     cattttgttg ggtagcgact acgtgtggtc cgcattcaca ggagagaagg tattagataa      1860
     gcatggaaac ataattgcaa tatccacaat attcgggtgg gtggtcacct caattgcagc      1920
     taaacaagga tcaaatacag catctctgtt atcaacgatc gaaataaata catcgctcca      1980
     aaggttttgg gaattggaag aattaagtgg cagtttgccg ccgactgctg atgatttaaa      2040
     ggtcgagaat cattttcgct ctacacactt tcgtgactca aatgggaggt atagtgttga      2100
     gcttccattt aagaactcgg atgttaagtt tgcagatact cttcagggag caacatcacg      2160
     attttattca gtagaacgtc gacttcagaa agataaaagg ttaaaggaag agtacaccaa      2220
     gttcatgcgc gaatacatcg ctttgggaca catgcgcatc cttgatgagt cagagaagac      2280
     gagtgcacct aaagaacaca tgttctatat gcctcaccat ccggttattg gtacgaaatt      2340
     gagaattgta tttgatggat cttataaaga taagagtggc agatcactaa acgatgagtt      2400
     actagtgggc ccaagtattc agcgtaacct aatggatgtg tgtttacgct ttcgacttta      2460
     taagtttgtt ttttgcgcag acatcattaa aacgtttagg caaatatgga tttctgaaaa      2520
     tcaccgaaat tatcaacgaa ttgtatggag agaaaaccca actgaagagc tgcaacatta      2580
     ccagctttgt actgtaactt atggaacagc ctgtgcaccg tttttagctg tacgtgtgtt      2640
     agaacaactt gccatcgatc taaagcataa atatccaaca gctgccaaga ttctattgga      2700
     agatttctac gtggacgatg tcctgaccgg agcaaacacg gaagatcaac ttatacgtaa      2760
     caaggatgaa cttattcaac tattaggtcg cgcacagctg gagcttggga aatgggtatc      2820
     caatacccac ggaatcggcc ctttagaaga agcagcagcg acaagtgtga ctggagatgc      2880
     ctcctccgtc aaggtattag gaatacattg ggaaccaaag tctgacatct tcacatatgg      2940
     tataaggttg agcgaatgca cagaaagttc aaaaagacaa gtattatcag acgtatcacg      3000
     catatttgac ccgcttggtc tactggcgcc ggtcattgtt caattcaaga tccttttcca      3060
     agagctctgg cttcttaatc tagattggga ttcaccgctt ccaactaagc tggcagaccg      3120
     atggcgtaag tatcgcgaag acattaacaa cataaggcag ttaaagatac ggcgtcatat      3180
     tgggtatgtc ggcaaacgaa tagagttaca cgccttctca gacgcctcaa taaaagcata      3240
     cgcagcagtc gtatactctc ggatcgtgaa ccaggatggc agcatagagg tttcactgat      3300
     cgcggcgaaa acacgggtcg ctccacttaa gcagcaatcg ctccctcgtt tggaattatg      3360
     tggcgcactt ctgctaagtc ggctgatcgc atcaattaaa ttagcttgga aggatctaga      3420
     aagcaccgta tatgcttggt gtgattcgac aattgtgttg gcatggctga accacttgcc      3480
     agctagtttg aagacgttca ttggcaatcg tactgccgaa atattggaag taataccaag      3540
     ggactcgtgg cgccatgtta ataccaagca gaaccccgca gactgcgctt ctagaggaat      3600
     gctggctgag gacttactcc cgtttactct ctggtggaag ggtcccgact ggctggctga      3660
     gacacatctt aacttaggta acgaagatga tatacaaatc tctaacttaa tttcagatga      3720
     cgagtaccga aaagagttga aggctacagt attagttact ctcgcggaaa ccatgaacga      3780
     gtcatctccc ctcgaagaac tcattggtcg tgtttcttcc tggcctagac ttgtgcgcat      3840
     tgtggcatac attttacgat tcatccgaca catgaaaaac ccccaagaaa agtcagacac      3900
     tttcgccgta acctgcgacg agtacaaggc agccaggaac ctatgtttgc agcaagctca      3960
     agacgaacgg cataaagaac gaaaagcgct acgaaatgaa ggatgcgtac caaaaggctc      4020
     taagctgtgt accctgacgc cgattctaga tgacagtggg cttctacgtg taggaggtcg      4080
     cctcaataat tcagagttat catattcagc caagcatccg ctcatcttgc cgaggaagca      4140
     tcgcatatct cacctgattt tggaacacga gcatcaacat aatctacacc caggagtttc      4200
     ggccctcttt gtcatagttc gtcaacgttt ctggataatg ggagccagaa atctgattcg      4260
     taaagttact cacaactgta taaagtgctt cagacagcga gcatatacca gcaaccaact      4320
     gatggccgca ctaccggcag tgagagttcg gcaagcattt ccgttcgaaa atacaggctg      4380
     tgattatgct ggcccaatca tgatgaagac acataaagga aggaccgctc gaaaggaaaa      4440
     gggatacata tgtctcttcg tatgcatggc aacctcagct ttacacttgg agctggcaac      4500
     agaccttagc actgatacat ttttggctgc tcttagacgt ttcatttcac ggcgaggcaa      4560
     atgtgtgacg atgttcagcg acaatggacg aaatttcgtg ggagccaaaa gaagtcttaa      4620
     cgaaatggaa caattagttc aatcccagct gcacaataac aagatagcag aggcgttatc      4680
     gatcgaaggc atcaactgga agttcatacc gccacatgcg cctcactggg gaggcaaatg      4740
     ggaatcggct gtgcgctctg tgaagcttca tttacaccga gtaatcggcc acgccgttct      4800
     tacattcgaa caaatgcata cgttgttaac acaggtggaa gcggtgatca actcaaggcc      4860
     tctttgtgcc acttccgata cagacgttgg atatctttcg cccgctcaca tgctgatcgg      4920
     tcgtccttac accacagtgc cagatggaga tttggaccaa gtgccggcaa accgattgga      4980
     ttactggcag caatctcagg ccatgttgca aggcttttgg aaaaggtggc atcttgagta      5040
     ccttacgtcg ttgcagcaaa ggccaaaatg gttaatgaaa tcggcaaacc cgaagcctga      5100
     tgatctcgta ctagtaaagg attctcatac tcctccggct tcatggatcc tggcccgcat      5160
     tatcgagacg attcctggcc cagacggtct agtacgagca cttaagttaa agacagctac      5220
     aggagagatg acccgtccca taaccaaggt ggctcccctg ccagtttcag aaacattgtt      5280
     tcagggcccg gcggta                                                      5296
//
ID   BEL-13_DWil-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   04-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_DWil_;
KW   BEL-13_DWil-I; BEL-13_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-256
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1792-1792 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 256 BP; 88 A; 37 C; 47 G; 84 T; 0 other;
     tgttgaggaa cggatgctga actcttaaac ttaaatttat ttgaatgtaa acgatctttg        60
     tattttatta tttttaactt taagtcgcat ggtcacaccg ttttggctga tgcaatagca       120
     agcgtgtggt gaaaacgaga aatgtatgtt gagttagtta attgcttatt ggtcaacaga       180
     gaccaacaca tggaataaaa cgcaaaccta ttttattata caaaacgaac cagcaaagtt       240
     aatttatgaa tcatca                                                       256
//
ID   BEL-13_LH-I repbase;    DNA;    INV; 5455 BP.
XX
AC   ADOQ01005553;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_LH_;
KW   BEL-13_LH-LTR; BEL-13_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5455
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005553; Positions     570    6024.
XX
CC   Positions [4307-4891] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3713..5236
FT                 /product="BEL-13_LH-I_1p"
FT                 /translation="MSEIPELKKNICLITNDGGSTILNKYSSYLKLLRIVA
FT                 YCLRVLPTNKYTGSLIAEEINRAEIRVLKILQNTRFYDEIKKLADKVSINK
FT                 GRLANLNPFLDENGLIRVGGRLQKSELSFGQKHPILLPNRHSLTDNIIRKI
FT                 HERHYHAGIQTTLYILRQKFWILDGRNQVRKVVRICVRCFRFNPNTVKYKM
FT                 GNLPVARVRGTPPFTNTGIDFCGPFFIKERKYRNRTRIKVYVCVFICMSIK
FT                 AIHIEVVSDLSSGGFLAALRRFTARRGLPEHIYSDNGSNFVGANNQLKEIY
FT                 VLLNSEDHKERINKYSSEHRITWHFIPPLAPHFGGLWESSVKLFKHHLKRV
FT                 IGDSLFTFEELNTFTTEVEGILNSRPITAISSDPNDMLVLSPAHFLIGKPI
FT                 TTLPEVDMSSVPDNRLSNWQHISKVRQDFWKRWNLEYLNELQVRNKWTKDG
FT                 PKLTNGTVVLVKEKNSPCTQWTLGRIEKVIPDEDGVIRTAIIKTAFGEIKR
FT                 AAKSLCPLPVEQ"
FT   CDS           join(135..1376,1380..3425)
FT                 /product="BEL-13_LH-I_2p"
FT                 /translation="MADRIKILVQKRTSLKSQITGLSNILDKGNTDDVALR
FT                 LRIKRLTELYHAFEEYNDELTVLDSNEIHQTEFINIQERFYSLAARVESNL
FT                 SASEADSDRQSVVNRADNVEITTSSRKRRIKLPEAALPTFDGKYECWLSFK
FT                 NAFHNMIGSQIDLSDIDKLHYLKSALIGEAANKARIFEIDGINYSNAWDIL
FT                 ERSYEVKRVLISRHLSLILNMPVLEKESSNGLSKLADDTQQHVAALSTLGV
FT                 AVGPEMIVHILESKLPKITLEKWETTLERDEFPKPDQMYEFLYKTTVCASK
FT                 RERAKTTEIEKNKIEPPSKRKRYCSSNQAFVLNVSRNCVICKVKKHPLYLC
FT                 EKFKQLPVHKRVETVKNANICYNCLRSHRGSPCKFSSCTICQKRHNTLIHQ
FT                 DNYEKVGKSSETRPEPKQTNLAEPIGNRTNSVATLHTFAPQLLTSALVNIR
FT                 DCKGKLVKCRALLDTCATANFISESIIKHLNFHVSEHLLPIGAINGMNTVS
FT                 KGIVQITIQSIHDDFCKELTCLTIPTIADLIPTEIFPRNSIKIPSNIRLAD
FT                 PDFYLPRSVDLLIGSGATLSLFAVGQTNVSHKGQDIYIQKTRLGWVVAGGA
FT                 SSKPQTKFATCHLTSLEDLLLKFWTIEEVAVVKPKSEEEIECEAHFMKTVS
FT                 RDSSGRYTVRLPFRNTNHRLGESRTIALKRLTSLEKKLNANTKMKTDYHKV
FT                 LEEYLKLRHMSRIEDTNDTGYYMPHHAVLKETSNTTKVRVVFDASAKTNNG
FT                 TSLNEMLFAGPTIQNNLVSHLLRFRTYRYVITADIEKMFRQVWLHEDDRRY
FT                 QRILWRRNDVIESYQINTLAFGVSSSPFLAIRTVQKLADDECDTYPRAAEI
FT                 LKKHLYVDDLLTGAETIEEVREIREEIIALLSRGGFTIRQWASNDERVIND
FT                 LESKALHANFALNGNHTLKTLGVKWSTHDDKLHYMTHPINTTERVTKRNIL
FT                 SEIAKIYDPLGLLGPVILYVKKLMQDVWRCGLHWDESVPQNIYTEWLEFTR
FT                 QWVSMERISFERKIFTEKHNDIQLHGFCDASNVGYGACIYVRSNRHSGNTI
FT                 VRLLCAKSRVAPLKTVTIPRLELCGALLLARLYKEVNEA"
XX
SQ   Sequence 5455 BP; 1850 A; 1002 C; 1141 G; 1462 T; 0 other;
     ttttggtgcc tcctgtgagg tcggtgaacg gccctggttt gcgatagcga gagctcgaga        60
     taaagaggaa aacaacgtac atcggattaa gttaagtaat ctgaatctaa caatttggtc       120
     acaattacat aataatggca gacagaatta agattcttgt acaaaaacgg acgtctttaa       180
     agtcccaaat cactggttta agtaatatcc tcgacaaagg taatacggat gacgtcgcat       240
     taagattacg aataaagcgt ttaacagaat tatatcacgc gttcgaagaa tataacgatg       300
     aacttacggt attagattca aacgagatac atcaaactga gttcataaac atacaagaac       360
     gtttttattc cttagctgca agagtcgaga gtaacttaag tgcgtcggaa gcggattccg       420
     ataggcaaag cgtcgtaaat agggccgata atgtagagat aacgacgtcg agtagaaaaa       480
     gacgaatcaa attaccagag gcggctttac cgacctttga tggtaaatat gagtgttggt       540
     tatcatttaa aaatgcattt cataatatga taggctcgca aatagacttg tcagacatag       600
     acaaactaca ttatttaaaa tcggcgttaa taggggaagc tgccaacaag gcacgaattt       660
     ttgagatcga cgggataaat tattcaaatg cttgggatat tctagagcgt tcgtatgaag       720
     taaaacgcgt attgatttca agacatcttt cattaatttt aaatatgcct gtgttagaaa       780
     aagaaagttc gaacggtttg tctaagctcg cggacgatac acaacaacac gtcgcggcgt       840
     taagcacgct aggcgttgct gtaggaccgg aaatgatcgt tcatatcttg gaaagcaaat       900
     tacccaagat tactttagag aaatgggaga cgactctcga aagagatgaa tttccaaaac       960
     cggatcaaat gtacgagttt ttgtataaaa caaccgtttg cgcgtcgaaa cgcgaaagag      1020
     caaaaacgac ggagatagag aaaaataaga tagaaccacc tagcaagaga aaacgatatt      1080
     gctcttcaaa tcaagcgttc gttttaaacg tgtctcgtaa ttgcgtgata tgtaaggtta      1140
     aaaaacatcc actctattta tgcgagaaat ttaaacaatt acccgtacat aaacgtgtcg      1200
     aaacagtaaa aaacgcaaac atctgttata attgtttacg atcgcataga ggtagtcctt      1260
     gcaagttctc tagttgcacc atttgccaaa agcgacacaa tacgcttata caccaagaca      1320
     attatgagaa agtcggtaaa tccagtgaaa ctagacccga gcctaaacaa acaaattgac      1380
     tagcagaacc gatcggtaac agaacaaata gtgtagcgac gttacatact ttcgcaccac      1440
     agctgttgac aagcgcatta gtaaatattc gtgattgtaa aggcaagctg gttaaatgcc      1500
     gtgcgttatt agacacgtgt gctaccgcaa attttatttc cgaatccatc ataaagcatt      1560
     taaactttca tgtatccgaa catttgttac cgatcggtgc tattaacggt atgaacaccg      1620
     tatcgaaagg catagtgcag atcaccatac aatcaataca cgacgatttc tgtaaagaac      1680
     taacgtgttt aacgataccg accatagcgg atttaatacc aacagagatt ttcccgcgca      1740
     attctataaa aataccttct aatatcagat tagcagatcc agatttttat ttaccacgtt      1800
     ccgttgactt attaataggt tcgggtgcga cattatcatt atttgcagtc ggtcagacca      1860
     atgtatcaca taagggacaa gatatatata tacaaaaaac gcgattgggt tgggtggttg      1920
     ctggaggagc gtcatcaaaa ccacaaacaa aattcgcgac atgtcattta acgtcactgg      1980
     aagatttatt acttaaattt tggacaattg aggaggttgc ggttgttaag ccaaaatcgg      2040
     aggaggaaat cgaatgcgaa gcgcatttta tgaaaacggt ttctcgagac agtagtggac      2100
     gttacaccgt tcgtttacca tttcgcaata caaatcatcg tttaggagaa tcgcgaacga      2160
     tcgcgcttaa acgattaaca tctttagaga aaaagcttaa cgcgaatacg aaaatgaaga      2220
     cggattatca taaagtgtta gaagaatatt tgaaattgag acatatgtct cggatagagg      2280
     atacaaatga taccggttat tatatgccac atcacgcggt acttaaagag acgagtaata      2340
     ccactaaagt gcgagtagtt tttgacgcgt cagctaaaac aaataacgga acatctctca      2400
     atgaaatgtt gtttgcaggt cctactattc aaaataattt agtatcacat ttacttcgat      2460
     tccgcacata cagatacgta attacagcag acatcgaaaa gatgttccgg caggtgtggt      2520
     tacatgagga tgaccgacgg tatcaacgta ttctctggcg tagaaatgac gtaatagaga      2580
     gttatcaaat caacacgctc gcttttggtg tttcttcttc accatttctt gcaatccgca      2640
     ctgtgcaaaa actcgcagat gacgaatgcg acacttatcc tagagcggcc gaaatactta      2700
     aaaaacatct atacgtagat gatttattga cgggagctga gacaatcgag gaagttcgcg      2760
     agataaggga agaaataatt gcattattat ccagaggtgg ttttactatc agacaatggg      2820
     catctaatga tgaacgtgta atcaatgatc tagagtccaa agcattacat gcaaacttcg      2880
     cgttaaacgg taatcatact ctaaaaacat taggcgtaaa gtggagcaca catgatgaca      2940
     aattacatta tatgactcat ccgattaata caactgagcg agtgacaaaa cggaacattt      3000
     tatcagaaat agcaaagatt tacgacccat taggtttgtt aggtccggtc attctatatg      3060
     ttaaaaaatt aatgcaagac gtgtggcggt gtggtttgca ttgggacgaa tcagttccgc      3120
     aaaatatata cacggaatgg ttagaattca cgagacaatg ggtgtcgatg gagcggatct      3180
     cctttgaaag aaaaatattt accgaaaaac acaatgatat tcaattgcac ggtttttgcg      3240
     acgctagtaa tgtgggttat ggtgcgtgta tatacgtccg ttcgaacaga cattccggaa      3300
     atacgattgt cagattatta tgcgctaaat cacgagttgc gccattaaaa acggttacca      3360
     taccgcgact cgagctttgt ggagcattat tgctagcacg tctatataag gaagtaaacg      3420
     aagcgtaagg cattgtaccc gatcgagtga tattttggtg tgattcgaca attgtgttac      3480
     actggttaaa aacgtctcca catttactta aaacttacgt agcaaatcgt gtagtgaaca      3540
     tacgagaaat taccgatctg atagagtgga gacacgttaa gtcagaggat aatccagcgg      3600
     atgcaattcg agaggtcaat tgcttcgtgt tttcctgaga aatcagacgt ggtatacggg      3660
     acctttctgg ttaaaggatg aggaagttaa atggcccaac gaaattgcac aaatgagtga      3720
     gatacccgaa ttaaagaaaa acatttgttt gataactaac gacggtggtt ccacaattct      3780
     aaataaatac tcgtcttatt tgaaattatt aagaatcgtg gcgtattgtc ttcgcgtttt      3840
     acccacaaac aaatatactg gatcgttgat cgcggaagaa ataaatagag cggagatacg      3900
     agtattaaag attcttcaaa acacacgatt ttatgacgaa ataaagaaat tagcagataa      3960
     ggtctcgata aataaaggta gattggcaaa tttaaatccg tttttagacg aaaatggctt      4020
     aatacgcgtg ggaggccgat tacaaaagtc agagctgtcg ttcggtcaaa aacatccgat      4080
     actacttcca aatcggcatt ctttgacaga caatataatt cgcaagattc atgaaaggca      4140
     ttatcacgca ggtatccaaa ccacgttata catattacgt cagaaatttt ggatattaga      4200
     tggtcgaaat caggtgagaa aggttgtacg catatgcgtg cgctgtttcc gattcaatcc      4260
     taacacggtt aaatataaaa tgggaaatct tccagtggcg cgcgtacgcg gaactccacc      4320
     atttactaac acaggcatag atttttgcgg cccgtttttt atcaaggaaa ggaaataccg      4380
     caatcgaacg cgaattaaag tatacgtatg cgtttttata tgtatgtcga taaaggcaat      4440
     acacatcgaa gtcgtaagcg acttatcatc cggaggcttt ttagcggcgt tgcgtagatt      4500
     tactgcgaga cggggtttac cggaacatat ttattcagac aacggatcca attttgtagg      4560
     agctaataac cagttgaagg aaatatatgt tctgcttaat tcagaggatc acaaagaacg      4620
     gattaacaaa tattcaagcg agcatagaat tacgtggcat tttataccac ctttagcccc      4680
     ccatttcggc ggactatggg agtcttcggt aaagctattc aaacaccatc ttaaacgagt      4740
     tattggagac tctttattta catttgaaga attgaacacg tttactaccg aagtcgaggg      4800
     tatcttaaat tctaggccaa ttactgctat ttcatctgac cctaacgaca tgttagtatt      4860
     gtctcctgca cattttttga tcggcaaacc aataacaaca ctaccagagg tagatatgtc      4920
     atctgttcca gacaaccggc tgtctaattg gcagcatata tcaaaggtac gacaagactt      4980
     ctggaaacgc tggaatcttg agtacctgaa cgagctacaa gtacgaaata aatggactaa      5040
     agacggaccg aaattaacta atggtaccgt cgtgctcgta aaggaaaaaa attcaccatg      5100
     cacgcagtgg acgctgggca gaattgagaa agtaattcca gatgaagacg gagtaattcg      5160
     aaccgctatc atcaagactg cattcggcga aataaaaaga gctgcgaagt ctctatgtcc      5220
     attgccagta gagcaatgat catgcgatac atgttataat acaattgtac actttattat      5280
     aagatgcgtt gtacattgta acacgatgcg taattatgcg ttcagtaact ccatgaacaa      5340
     tagttgttcg gtaccctccc aacgggggga gtatgttatg tagagttaca agtcgtgcac      5400
     gacacacaca cacacacaca catatatata atatacacat aaaaatatat atata           5455
//
ID   BEL-13_LH-LTR repbase;    DNA;    INV; 550 BP.
XX
AC   ADOQ01005553;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_LH_;
KW   BEL-13_LH-I; BEL-13_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-550
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005553; Positions      20     569.
XX
SQ   Sequence 550 BP; 162 A; 115 C; 128 G; 145 T; 0 other;
     tggtcgagcg aagtcgacgc atgcacacgt acatgcacgc tatagagtgt gccgaaaact        60
     atgttattct ttcgcgtgat tggacgcgcg gtttcatgag atcgaggaga ccaatcataa       120
     atcatctcga tcatggcagc tcagagatcg accgagatat tcattcaagt cttggtttcc       180
     gaacggtata gacgcatttt tctataaaag gttttcagtt acagtacgtg tgcatagaca       240
     gtcgcgattc agaataaaaa acattcctag gcgtcatcgc gatcgtttcg accagacgat       300
     acgtatgcgt tctcggccgc gactcaggac gaaaagttcc tcaggcgttg tcgcggtcgc       360
     ccaatttgac tcaggacgaa aagttcctca ggcgttgtcg tgggtaatat aggactttcg       420
     agtcctcata atcgaaatct tttccgtacg tgattgtttg taaaaatata tgaaacaaga       480
     acaaataaac tatatacaaa cgaaaagaca gtgtaggtgt tagtgatacc ttcactgaaa       540
     ggacgataca                                                              550
//
ID   BEL-13_MoPha-I repbase;    DNA;    INV; 5899 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5899
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1139-1139 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           603..5774
FT                 /product="BEL-13_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSAEQDPASLKRQRAVVKGSCTRISTYVQGISVATPS
FT                 VAAQLEERKIKLNEYWSQYNEIQSQLESIDENEINDRGTFEEAFFSLSAKI
FT                 RELLNPVLALRAPPSSPSTSNASNRSEGPFNVRLPKLNLPSFSGKYDEWFP
FT                 FFDSFKSVIHSNTSISNIQKLQYLKSSLSGDASNVIHSLEISELNYDVAWR
FT                 LLRERYDNKRVIIHTHIEAIMELPSMTRENLIELRRIADGVNRHMRALNAL
FT                 KRPTSQWDDLLVYIVSSKLDATTLREWQASLXGMEPPTFKQLNDFIIHQCQ
FT                 MLEATSKASDVSSKDAHKRPQSNAKRQTSCVATVKAKCNFCKGEHAMYHCK
FT                 DFLALPVSRRISEVRNRKICTNCLRFPSHALDQCTSGGCRVCKAKHNTLLH
FT                 AGESTPKTHDSNGDNTDAPRTPNSSSTVSAHASTSHGEEYTMLSTALVNAF
FT                 DRNGSTKPCRVLLDSGSQANFITMEYARIIGVPPRPLNTSISGINNTNSQA
FT                 TQAVKVRIQSRVNSYSITIDCVVTDQITGKLPTLSMQRSSYNIPRNLKLAD
FT                 PHFNVSAKVDLLIGAEFFWELLCVGQIKASTEHPTLQKTHFGWILAGRRDI
FT                 VSSPPRNIHSFAATISNVQLHDQIKRFCEIEDITNVTSHNADEAYCEQHYL
FT                 TNVSQNAQGRYVVKLPIKDAAMTKLGESRQIALKRLQGLERRLARSPQLRA
FT                 QYSQFMAEYLTLGHMRRVDITANEDIRAFYLPHHCVFKTSEPSSKIRVVFD
FT                 ASCKSTTGVSLNDTLRVGPVVQQDLTSIVMRFRTFKFVLTADIIKMYRQVL
FT                 VHPSQTPLQRILWRDDPAADVVTYELVTVTYGTTPASFLVTRSLKHLAEQH
FT                 SAIYPVGASCVQRDFYVDDMLTGGNTLQEVETIRDETIQLLRLGCFELSKW
FT                 ASNNKELLTPVTSQVEESVVINKEANACILGVQWNPTSDTFHFSYEPDKAY
FT                 DTVSKRVMLSEVSKLFDPLGLLGPTIVIAKLILQDLWRSNVDWDESVPQAV
FT                 YTRWSTFKNQLIELNQLTIPRRVKFSANNRMIQVHGFCDASQYAYGACIYV
FT                 RTKLKNGDYQCELLGSKSRVAPLKTISLPRLELSAALLLTRLLERVRASIN
FT                 LTNVKIYLWSDSTIALNWIASASRKFSVFVSNRIGEIQRATEPEDWRHVPS
FT                 AQNPADLLSRGLNPRELVNATTWWKGPAFLQQSECQWPVNKLPRLGNDIPE
FT                 LQKIYVNVAIVDVSIINEILDKYSNLDKVCRIISYCIRFARRSSRATTLFI
FT                 THEEMSSALHRLCKIVQQHSFPDDYKTLSNAEAISXSSKILSLTPFMDHSG
FT                 LIRVGGRLRNSNLPHDTCHPILLPRDHELTKRIISKEHVRSMHAGTQATMA
FT                 AVRQRFWPLSLRSTTRRIVLRCVRCFRVKPVLSEALMGSLPSSRVTISRPF
FT                 ARCGVDYAGPLILREGKRRNARNHKAYVAVFVCFTVKAVHLELVGDLTSDA
FT                 FLAAFKRFISRRGRPSHVWSDNGTSFVGAXNQLKDFYGLLNDDTVQDKVKT
FT                 FSRDQQISWSFIPPSSPHHGGLWEAAVKSAKYHMHRIIGKAHLTYEEMQTT
FT                 LCEVEAILNSRPITALSADPNDLAYLTPGHFLIGTPMNSFPTPDLTDLSEN
FT                 RLVRWQRVEQLRQHFWRRWSLEYLHSLQTRSKWKATKGNQLQRGQLVLVKQ
FT                 QDLHPLNWLLGRVHEIHIGSDGIVRTADVKTTKGLLTRPLTKLAILPVETT
FT                 DDSL"
XX
SQ   Sequence 5899 BP; 1625 A; 1522 C; 1344 G; 1401 T; 7 other;
     ttgttggtcc ttcgagccgg ataccaatcc ggatcttcgc aagggggcam ggaaggtcag        60
     gcaatcagcc acgtctccac gacaaggcgc agccagcaaa cggcgtgtag cagcaaggga       120
     cagcccgatc ataacctaca agcgttcaat cgccgcgtgg tgactcccgc ccggatcggc       180
     gcagcctcgc atcgtcgggg acgaatcttg gtgcatccac taagccctca gcatcagatt       240
     aaaggtcaga caataaccac gctcccagcg gcgagataca ttcagcgaac ggcgagtagc       300
     agcaagggac cgcccgatca taacctacaa gckttcaatc gccgcgtggc gactctcgcc       360
     cggatcgtcg cagcctcgca ccatcgggga cggatctcgg cttcaagcag aacttcgtca       420
     cggaattgaa ggacggcaag gacctactga gggacttttc cgcacgacca catccgagga       480
     cgacagcact ccgcctgcat cggaaatctt cggcgcscaa tttcggtaag ggtaactgtt       540
     cacttcgggg tgccaagtcg tctcgtaata tctcacgcst tcgaacaggg tcgtcattcg       600
     caatgtccgc agagcaggat ccggcctcgc taaaacgaca gcgtgcggtc gtaaaggggt       660
     cgtgcacgcg tataagcact tacgtccaag gtatttcggt agcaacgcct tccgtcgcgg       720
     ctcaactcga agagcgcaaa attaaattaa acgagtactg gtcgcagtac aatgaaatac       780
     agtctcaact cgagtcgata gacgagaacg aaatcaacga ccgcggtact ttcgaggagg       840
     ccttcttctc actatccgct aagattcgcg aacttctcaa tcccgtactt gcgttacgcg       900
     ccccgccgag ctcaccgtct acctcgaacg cgtccaatcg atctgagggt ccattcaacg       960
     tacgactgcc taaattaaat cttccatctt tttctggcaa gtacgatgaa tggtttccct      1020
     tttttgactc attcaagtcg gtcatacatt caaacacgtc tatcagcaac atacaaaaac      1080
     tgcaatattt aaaatcctcc ttatcaggtg atgcgagtaa cgtaatacat tcattagaaa      1140
     tttcggaatt gaactatgac gtagcctgga gattattgag ggagcgttat gacaacaaac      1200
     gtgtcataat ccacacacac attgaggcga tcatggagtt gccgtctatg acaagggaaa      1260
     atttaattga attacggcgt attgcagatg gagtcaacag acatatgcga gctcttaacg      1320
     cgctcaaacg ccctacatct cagtgggacg acctgcttgt ttacattgta agttcaaaac      1380
     tggacgcaac cacactgcga gaatggcaag cctcattagm cggaatggaa cctcctacct      1440
     tcaagcagct caatgatttc atcattcatc aatgccagat gctcgaggcc acgagtaagg      1500
     ctagcgacgt ctcatccaag gacgctcaca agcggccgca atccaacgcg aagcgccaaa      1560
     cttcatgtgt cgccaccgtc aaggcaaaat gcaatttttg caagggcgaa cacgccatgt      1620
     accattgcaa ggattttttg gcgctgccgg tttcccgaag gatttcagag gttcgtaatc      1680
     gtaaaatctg taccaattgc ctacgatttc cgagtcacgc cttagaccaa tgcacatctg      1740
     gaggttgcag agtgtgcaag gcaaagcata atacgttact acatgcagga gagagcacgc      1800
     caaagaccca cgacagcaac ggcgataaca ctgatgcacc caggacgcca aactcctcat      1860
     caaccgtgtc agcacacgcg tcaaccagcc acggtgaaga gtacacgatg ctatccacgg      1920
     cgctggtcaa tgccttcgac cgcaacggat ctacgaagcc atgccgcgtt ttattggact      1980
     ctggttctca agctaatttc atcaccatgg aatatgcacg aatcattgga gtgcctccac      2040
     gcccgctaaa tacatcaatt tctggcataa ataatacaaa ttcgcaggct actcaagcgg      2100
     tcaaggtaag gattcaatcc cgagtgaatt cttattcaat cacaattgac tgcgttgtca      2160
     cggatcaaat aactggtaaa ctaccgacgc tctctatgca acgaagctca tacaacatac      2220
     ctcgtaacct caagttagcc gacccacatt tcaacgtctc agccaaggtc gacttgctca      2280
     tcggagccga gttcttctgg gagttgcttt gcgtgggaca aatcaaggcc tccacggagc      2340
     acccgacgtt acagaaaacg cacttcgggt ggattctggc agggcgccgg gacatcgtgt      2400
     cgtcacctcc gcgaaatata cattcattcg cagcaactat atcgaacgtt caattacatg      2460
     atcaaataaa acgcttctgc gaaatagagg acatcaccaa cgttactagc cataacgcag      2520
     atgaagcata ttgtgaacag cactatctaa caaatgtatc acaaaatgca caaggaagat      2580
     acgtggtcaa actcccgatc aaggacgcag cgatgacgaa attaggagaa tctcgacaga      2640
     ttgctttaaa acgcctacaa ggcttggaac ggcggcttgc ccgcagccct caattaaggg      2700
     ctcaatactc gcaattcatg gcagaatatc taacgctcgg tcacatgagg cgagtggata      2760
     ttactgcaaa cgaagatata agagcattct acttgcctca ccattgtgtt ttcaaaacct      2820
     cggagccttc ctcgaagatc agagtcgtgt ttgacgcctc ctgcaagagc actactggag      2880
     tatctctaaa cgacacgttg agagttggtc cggtcgtaca acaggattta acgtcaatcg      2940
     tgatgcgttt tcgtacgttt aaatttgtac tgaccgccga cataattaag atgtacaggc      3000
     aggtgttggt gcatccgtct caaactccac ttcaaagaat cttgtggcgc gacgaccctg      3060
     ccgcagacgt agtaacctac gaactagtca ccgtcaccta tggtacaacg ccggcatcat      3120
     ttctcgtcac aagatccttg aaacatctgg cagagcaaca ttcagcgatc taccccgtcg      3180
     gagcgtcatg cgtccagcgt gatttttacg tcgacgacat gctcacagga ggtaacactc      3240
     ttcaagaagt agaaacaata cgcgacgaaa cgatacagct cctgaggcta ggatgtttcg      3300
     aacttagcaa gtgggcttca aataacaagg aattactaac tcctgtaact agtcaggtcg      3360
     aggagtcggt cgttattaac aaggaagcga acgcttgtat tttgggcgtc caatggaatc      3420
     ccacctccga cacctttcac ttctcatatg agcctgacaa ggcttacgat acggtctcca      3480
     agcgcgtaat gctgtcagaa gtgtcaaaat tgtttgatcc gttgggtctc cttggaccaa      3540
     ccatcgtgat tgccaaatta atccttcaag atctttggcg ttcaaatgtc gattgggatg      3600
     agtctgtccc acaggccgta tacactcgtt ggtccacatt caaaaaccag ctgatcgaat      3660
     taaatcaatt gacaatcccc agacgcgtga aatttagtgc aaacaatagg atgatacaag      3720
     tgcatggctt ctgtgatgcc agtcaatatg cgtacggagc ctgcatttac gtccgaacga      3780
     aactcaagaa cggtgactat caatgcgagt tacttggctc aaaatcaagg gtcgcccctc      3840
     tgaagacaat ttcactaccc cggctagagc tatcagccgc cttgctactg acccggctgc      3900
     ttgaaagggt cagagcgtca atcaacttaa caaacgtcaa aatatatctt tggtcagatt      3960
     cgaccatagc cctcaattgg atcgcatcag cctcccgcaa attttcggtg ttcgtgtcaa      4020
     accgcatagg agaaatacaa cgagcgactg aacccgagga ttggcggcac gtgccgtcgg      4080
     cccagaatcc cgcagatcta ttgtcgcgag gtttaaaccc acgtgaatta gtcaacgcta      4140
     ccacgtggtg gaaggggcca gccttcttgc aacagagcga gtgtcaatgg cctgtcaaca      4200
     agcttccacg tcttggaaac gacatcccgg agcttcagaa aatttatgtc aatgttgcca      4260
     tcgtagatgt cagcataatc aacgaaatcc tcgacaaata ctcgaatttg gacaaggttt      4320
     gccgcatcat atcatactgc attaggttcg ccagacgatc atcaagggct acgacattgt      4380
     tcatcactca tgaagaaatg tcttctgcat tgcatcgctt gtgtaagatc gtccaacagc      4440
     attcctttcc agacgattac aaaaccttaa gcaatgctga agccatcagt asatccagca      4500
     aaattttatc gctaacacca ttcatggatc actccggatt aattcgagta ggaggtaggt      4560
     tgagaaactc aaatttacca catgacacct gccatccgat tctattacct cgtgatcacg      4620
     aattgacgaa gcgtatcatc tcaaaggaac atgtacgcag catgcacgcc ggcactcaag      4680
     ccaccatggc cgccgtccga cagcgttttt ggccactttc actacggtca acaacacgaa      4740
     gaattgtcct aagatgcgtc agatgcttcc gagtcaagcc ggtgctctct gaggccttaa      4800
     tgggatccct tccctccagt cgcgtcacta tttcgaggcc gttcgcacgg tgtggtgttg      4860
     attatgccgg ccccttaatc ttacgagaag gaaagcgtcg aaacgcgcgt aatcataagg      4920
     catacgttgc cgtttttgta tgtttcacgg tcaaggccgt gcacttagaa cttgtcggtg      4980
     atcttacgtc ggatgcgttc ttagccgcgt tcaagcgttt catatcgcgc agggggagac      5040
     cctctcacgt atggtccgat aacggaacct catttgtcgg cgctmaaaac caattaaagg      5100
     atttttatgg cttacttaat gacgacactg ttcaggataa ggttaaaaca ttttcacgcg      5160
     atcagcaaat ctcgtggagc tttatacctc ccagttcccc gcatcacgga ggattgtggg      5220
     aggccgcggt aaagtccgct aaatatcata tgcatagaat cataggcaag gctcacttga      5280
     catatgaaga gatgcaaacc acgttgtgtg aagtagaagc aattctcaac tcgcggccca      5340
     tcacagcgtt gagcgcggac ccaaacgact tggcgtattt gacccccggt cattttttga      5400
     ttggcactcc gatgaatagt ttccctactc ccgatttaac cgacctaagc gaaaaccgcc      5460
     tggtacgttg gcagcgcgta gaacagctaa gacagcattt ttggcgtcgg tggagcttag      5520
     agtacctcca ctccttacaa acgcgttcaa agtggaaggc tacgaagggg aatcaattgc      5580
     aacgcggtca actcgtgctg gtcaagcagc aggatttaca tcctttgaat tggttattgg      5640
     gtcgtgttca tgaaatccat atcggatctg atggaatcgt tcgcacggcg gatgttaaaa      5700
     ctacgaaggg acttcttact agacctttga ccaaacttgc gatattaccc gtagaaacta      5760
     ctgacgatag tctttaaggt taccttttag tcagagtggt agattagtat ttaagttata      5820
     accattttgt taatcttcat tcattattcg cagcgttaca ttatatatta aaaggcaagc      5880
     ctttcaaggg gggcggcgt                                                   5899
//
ID   BEL-13_MoPha-LTR repbase;    DNA;    INV; 410 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-410
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1079-1079 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 410 BP; 100 A; 110 C; 85 G; 114 T; 1 other;
     tgtatcgttt atctctctaa atttgtatga gcgccagcac accaagatgt caactgttaa        60
     ctcgaatttc tgtcataccg acatgtgcgc ttccgcgacg cgtgacgcgc tttcttggta       120
     ttactgcgcc aggaaggaac tacttccgct ttccttcttc tggcgcgcgc gtttgctttt       180
     tcgggccata ttgttcacca cgctcgtcgt tgttacacac tcaagtagac acgatcgcat       240
     atttcagtca caactgtaag cctccggcct cccgaagagt aaaataaagt gtttgctatk       300
     atatcaaatc gagagaagtg tatattctcg cccgcattgt catcgaagca ataattccgc       360
     tgacgcatgc gacaggcacg agcctgcaaa cgtacatccg aaacgttaca                  410
//
ID   BEL-13_SI-I repbase;    DNA;    INV; 5628 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SI_;
KW   BEL-13_SI-LTR; BEL-13_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5628
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 425-425 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4661-5236] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           647..5587
FT                 /product="BEL-13_SI-I_1p"
FT                 /translation="MSSRASPRAPPPPNPGISGEASLMNSTTATTSATKLS
FT                 RIELPEFSGDRLRWTHFRDMFETLVINNSSLNNVTRLHYLMSKLKGDAALL
FT                 LRNFKISEDNFEPAWKALTDEFANTRLIINSHLQSIVDLPIVKAETASALR
FT                 NLRDVTRSAIEALSNLGRPVDKWDDLLIFILTKKLPSRTRQEWQMELGDSY
FT                 EPSTFDAFLKFISKRIRGLDDDNPTNTNDTVAGRSCNSKAKIHTANQSSAQ
FT                 DSRKCPACSEKHLLFRCNKFVPLDVDQRFALAKKLRCCMNCLRPGRSTSAC
FT                 TNPQKCFKCDKAHHTYLHRDVKNNESTSCGENKPVAPGAANQESVGPSVHT
FT                 ASACLSKSPTVLLATAWVNLRTRENRVVRVRALLDQGATHTFITETLAQSL
FT                 HTSRQRTTLPVSCFGAQYSGTAKAMIRLSLESCMTPGISLPIKAYVFNRIT
FT                 SYSTSKRSPASDWPHLHGLNLADPDLADRTPIQLLIGAELYGSLLRDGLRQ
FT                 GPFGSPTAQLTIFRWIVSGPTDDNDSDATVCVASTDNEYTDLNRILVRFWE
FT                 TEDVPATSSLTSDEEECESHFRSTHAREESGRYIVRLPFKQSPPPIGDSSY
FT                 IASRLYDKLERRLSRDTTLAGSYGAFLREYLDLGHMELVTGPEPQRDGVVY
FT                 LPHHPVMKSENLTTKLRVVFNASCATSNGTSLNDHLHIGPKLQTDLTSILI
FT                 RWRQHKYVYLADIEKMFRQILVQHEDSEYQRISWRPSPQDSIQSYRLRTVT
FT                 YGTAPAPYLAIRVLHQLGEDEGHRFPLARPILQNATYVDDILFGAGEIDTA
FT                 NAMRLQLVNMLAAGGFSLRKWASNAAELLEDLPSKDRAINMDYSLDEDSSI
FT                 KVLGIAWAPQDDAFSFRISLPPPSAATKRLILATIARIFDPLGWATPVVII
FT                 AKTLTQELWIRTCDWDEPLPTDLNERWETYRGSLQSLDKVRIPRWTGLSKH
FT                 VNHIELHGFSDASIKAISAVVYMRITYSRDVKVTLIAAKSKVAPIKTLPIP
FT                 RLELSGAVLLVRLLRYVVDAMQSPNIAIHCWTDSTIVLEWLKKHPSTWATF
FT                 VANRVSKIQTELPSATWHHVPTNSNPADIASRGVTPAELASCRLWWSGPDW
FT                 LEQAPNLWPMRTSKDTGEDTRGVCSEIRKAAVLHISDWPKPLALDDLPHRL
FT                 SSWTRLLRVTAYVFRFIARPRLKRSGDARTDSHITATEVAAARNFWCKQAQ
FT                 LSFVSEYKALRQRQPIASRSPLLRLTPFLDENGTIRLGGRLKNSHLTFSER
FT                 HPIILPRHRISELIIEYAHKQTLHGGPQLTLRYIRQNYWILGARNLVKSTI
FT                 HRCVPCTRQRALTTTQLMGNLPTSRVTPSRPFLHTGVDYAGPFAVLLKRGR
FT                 GHSSHKAYVSIFVRLSTRAIHLELVSDLSTGAFLAAFKRFVSRRGIPSDVY
FT                 SDNGTNFQGADRELATTFRNITGNPDFGSLLASDGTSWHFIPPAAPHFGGI
FT                 WEAGVKSMKHHLRRIVGKHTLSIEEFGTLLCQIEACLNSRPISAMTSDPED
FT                 FATLTPGHFLIGAPLLTVPEASVIDLNENRLSRYQRVRAMLEHFWIAWSRD
FT                 YLHTLQQRSKWMRSLPDAKPGDLVLLRNDLLPPSKWALARITSTQPGDDGH
FT                 VRIVHLKTKDSAFVRPISQICRLPVGQGN"
XX
SQ   Sequence 5628 BP; 1382 A; 1542 C; 1349 G; 1354 T; 1 other;
     tttaatggtc cttcgagccg gatcgcgggt ggacatcaaa gggattcgtg aactttctca        60
     gtgcgtatca acgactatta accctttacg tggacatcgc atacgttttc ggcatatatc       120
     gtgtttcgtg tgtttatcta aggagaacag taatccgttt atcgcgaggc aacgcgcttg       180
     agggccgagc cgagtgacct cgaaatacca taacgcgcat tccatcggct cgtgtcgtgc       240
     aggtgtcttc tgcgggcagc tgaattcctc ttttctttcc tttccctctt cttacctttg       300
     ttaccgtcgc aagcgacccg tatactcggt gaacaatact tgtgcgaatt tagtgaactt       360
     agtgcagtat ggcaacgctt aaagagttgc tcaagcaacg agacgctcaa attggacaga       420
     ttgctcgtgc ggtgacgaac ctgaagaaga tcggagccaa cgattacacc gtctacaagg       480
     tgaaacatcg agtctttgga aaagcagtgg gagaaggttc ggctcgtcaa tgtacaactc       540
     attcaaaagg cgtccgaaga agaaagaggc caactagcat acttcacgca ggacgagttt       600
     cttcaagccg aggaagagta tctcgaggct tcggactaca tggccgatgt catcgagagc       660
     ctctccgcga gccccccctc cccccaatcc ggggatttca ggtgaagcca gccttatgaa       720
     ctcgaccact gcgacaactt ccgctacgaa gctcagccgt atcgagctcc ccgaattttc       780
     cggtgaccgt ttacgttgga cccatttccg cgacatgttt gaaactctcg tgattaataa       840
     ttcgtcactg aataatgtca cgcgcttaca ttatttgatg tctaaactga agggcgatgc       900
     agccttatta ttgcgaaact ttaaaatttc cgaagataac ttcgagcccg catggaaggc       960
     gttaacggac gaattcgcga atacgcgttt aatcattaat tcacacttgc aatcaatcgt      1020
     tgacttaccg attgtgaagg ccgaaacagc cagcgcactt cgaaatttac gtgacgtaac      1080
     gcgatcagcg atcgaggcgt tgtcgaatct tgggcgtcct gtcgacaaat gggacgatct      1140
     tttgattttt attcttacaa agaaactgcc ctctcgcact cgtcaggagt ggcaaatgga      1200
     gttgggggac tcctacgaac catcaacatt cgacgcgttt ctaaagttta tttccaagcg      1260
     aattagaggt ctcgatgatg ataatccaac aaatacgaac gataccgtag ccggaaggtc      1320
     gtgcaattcg aaggcaaaga ttcataccgc gaatcaatca tccgcacaag actctcgtaa      1380
     gtgccccgct tgttccgaaa agcacctcct atttcgatgc aataaattcg tccccttgga      1440
     cgtcgatcaa cgcttcgccc tagcgaaaaa attaaggtgt tgcatgaatt gcttgcgacc      1500
     cggtcgttcc accagtgcgt gtacaaatcc acaaaaatgc ttcaagtgcg ataaggcgca      1560
     ccatacgtac ttgcaccgcg atgtcaaaaa taacgagagt acgtcgtgtg gcgagaataa      1620
     acccgtcgct ccgggtgctg cgaatcaaga aagcgtcggt ccatccgtac ataccgcgtc      1680
     agcatgcttg tcgaagagtc ccaccgtgct tctcgctacc gcgtgggtaa atttgcgtac      1740
     tcgtgaaaac cgagtagtac gggtacgcgc gcttctagat cagggggcca ctcatacgtt      1800
     cattacggag acgctggctc aatcgctgca tacgtcacgt caacggacga ctctgcccgt      1860
     gtcgtgtttt ggcgcccaat actccggcac ggcaaaggcg atgatacgac tctcgctcga      1920
     gtcgtgtatg acgcccggca tatctctgcc gatcaaggcg tatgtgttca atcggataac      1980
     ttcgtacagt acctccaaac gcagtcctgc ttctgattgg ccacatctac acggactcaa      2040
     tctcgccgat cctgatctcg cggatcgaac cccaatacaa ctgttaattg gagcggaatt      2100
     atacggctct ctattgcgag atggtcttcg gcaaggtccg ttcggtagtc ccacggcaca      2160
     attgacgatc tttagatgga tcgtctctgg ccctactgac gataacgatt ccgatgcgac      2220
     ggtttgcgtt gcgtcaaccg ataatgagta tacggaccta aaccgaatcc tcgtgcgatt      2280
     ctgggagacc gaggacgttc ccgcgacatc aagcctcacc tcggacgagg aagaatgcga      2340
     gagtcatttt cgttcgacgc acgcgaggga ggaaagcgga cgatacatcg ttcgcctccc      2400
     atttaagcag tctcctccgc ctataggaga ctcgagttat atagcgtccc gcctgtacga      2460
     caaactagaa agacgactat cgcgcgatac tacgctcgct ggatcatacg gagccttcct      2520
     tcgagaatac cttgacctag gacacatgga actggtcacc ggaccagaac cgcaacgcga      2580
     cggagtagtc tatctaccgc atcatcccgt gatgaaaagc gaaaatttaa ctacaaaatt      2640
     aagagtcgta tttaacgcgt cgtgcgctac ctcaaacggg acgtccctca acgatcacct      2700
     acacattgga cccaagctcc aaaccgatct gacgtctata ctaatcaggt ggcgacaaca      2760
     caaatacgtg tatcttgccg acattgagaa gatgtttcga cagatactgg tacaacatga      2820
     agattctgaa taccagagaa tttcgtggcg accatctcca caggattcaa tccaatcata      2880
     tcgcctacgc accgtcacat atggcaccgc tcccgcgcca taccttgcga tacgggtatt      2940
     acaccagctt ggcgaggatg aaggtcatcg atttcctctc gctcgtccca ttttgcaaaa      3000
     tgcgacctac gtcgatgaca ttttatttgg tgctggggag attgatacgg ccaatgcgat      3060
     gagactacag ctagtcaaca tgctcgcggc gggcggattc agtctccgaa aatgggcgtc      3120
     taacgctgcc gagttgcttg aggatttacc ttcaaaggat cgagctatta atatggatta      3180
     ttcgttggat gaggatagca gcatcaaggt tctcggcata gcatgggcac ctcaagacga      3240
     cgccttctcc ttccgtattt cgctcccgcc cccgtcggca gctactaagc gcttaattct      3300
     agcaacgatc gccagaattt ttgaccccct tgggtgggct accccggtag tcattattgc      3360
     taaaacccta acgcaagaat tatggattag gacatgcgac tgggatgagc cgcttcccac      3420
     agacctcaac gaacggtggg aaacctatcg cggctcactt cagtctctcg acaaggttcg      3480
     gattccacgc tggaccggac tatctaaaca cgtcaatcac atcgagctcc acggtttttc      3540
     tgacgcatcg attaaggcta taagtgccgt ggtgtacatg aggatcacct attcgaggga      3600
     tgtcaaggtc acgctcatcg ccgccaagtc taaggtggcg ccaataaaaa ctctgcctat      3660
     cccgcgacta gagttaagcg gcgcagtatt attggttcga ttgctgcgat acgttgtcga      3720
     cgcgatgcag tccccgaata ttgcaatcca ttgctggaca gattcgacaa tcgtactcga      3780
     gtggctcaaa aaacatccct ccacgtgggc tacgttcgta gctaatcggg tgtcgaaaat      3840
     tcaaaccgag ctaccttctg ccacntggca ccatgtaccg accaattcga atccagcgga      3900
     tattgcctcg cgtggcgtca ctcccgcgga gttggcatct tgcaggctct ggtggtctgg      3960
     accggattgg ttagaacagg ctccgaattt atggcccatg cggacttcca aggataccgg      4020
     cgaagatacc cgcggcgtct gctccgaaat ccgcaaggcc gcggttctcc acatcagcga      4080
     ctggccaaaa ccgcttgctc tggacgacct tccacatcga ctgtcatcgt ggacgcgtct      4140
     tcttagagtg accgcatatg tctttcggtt catagcacga cctcgtctga aacgatccgg      4200
     tgatgcacga accgattctc acatcaccgc cactgaagtg gctgccgccc ggaacttctg      4260
     gtgtaagcag gctcaactca gttttgtctc ggaatataag gccctccgac aaagacagcc      4320
     tatagcatct cgaagtccat tactgagatt gacgccgttc ctggacgaaa atggcacgat      4380
     ccggcttggc gggcggctta aaaactcaca tctcacattc tctgagcgac acccgatcat      4440
     cttgcctcgc catcgtatca gcgagctgat catagagtac gcccataaac aaacgctcca      4500
     cgggggcccg caattgactc ttcgatacat tcggcagaat tactggattt taggagcaag      4560
     aaatcttgtc aagtcgacta tccaccgctg tgtcccgtgc actcgccaac gagcgttaac      4620
     tacgactcag cttatgggaa acctgcctac ttctcgcgtc acgccatctc gcccgttcct      4680
     gcacacgggc gtggattatg cagggccatt tgccgtctta ttgaagagag gaagagggca      4740
     ctcctcacac aaggcttacg tgtctatatt cgttcgtctc tcgacgcgcg ccatacactt      4800
     ggagcttgtc tccgacttat ccacgggagc cttcctcgct gcattcaaac gcttcgtctc      4860
     gcgtcgcgga attccaagcg acgtatatag cgataacggg actaactttc aaggcgcgga      4920
     cagggagctg gcaactacat tccggaacat aaccggaaac ccagactttg gttcgcttct      4980
     ggcttccgat gggacttcgt ggcattttat tccgcccgct gccccccact tcgggggtat      5040
     ttgggaggcc ggcgtgaaga gcatgaagca tcatttacga cgcatcgtgg gcaagcacac      5100
     attatcaatt gaagaattcg gcactctcct ctgtcaaatt gaagcctgtc tgaattctcg      5160
     accgatatca gccatgacaa gcgatccaga ggactttgcg acgctaactc ccgggcattt      5220
     cctcattgga gcgccactcc tcaccgtccc cgaggcatcg gtgatagact tgaacgaaaa      5280
     tcgcctttcc cgctatcaac gagttcgcgc gatgctcgag catttttgga ttgcctggtc      5340
     ccgagactat ttacacacct tacagcaacg ttccaagtgg atgcgctctc tcccggatgc      5400
     taaacctgga gatctcgtac ttttgcgtaa cgacttatta ccgccctcca aatgggctct      5460
     cgcgcgcatt acctctactc agcccggtga cgatggacat gtccgcattg ttcatttaaa      5520
     aacaaaggat tccgccttcg tgagacctat atcacaaatc tgtcgtctcc cggtaggtca      5580
     gggtaattga ttatgtgtcg taccgttccg gatacgaggc gggcggta                   5628
//
ID   BEL-13_SI-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SI_;
KW   BEL-13_SI-I; BEL-13_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-439
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 426-426 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 439 BP; 116 A; 101 C; 95 G; 126 T; 1 other;
     tgttacggtt cgtatgtcag aaacacacat attcaagcaa cgttacggcc ttcgcatttt        60
     cgaggatcat gaatcgatct cgtgatctat cgtttccttc ggtgcgtgcg tcgttcttgc       120
     cgcttcgctg cgaaagcttg tgttaccgtc cgaaaagtca gtccgtatat agatcgtcta       180
     gcgtacggat gtaatcgttc gcagtctcac ccgagtgtgt gtcgaataga atgctcccgt       240
     gagctaacta tatagaaagt taagacattg taaacgattg tgaaatatac agtaaagttg       300
     ttcaattttg gccagttaaa tagtgcatca ttactgtttc accccccctt ntatcatttc       360
     acgagtccat ccataacgct cgctccggca caaaaaaaaa caacttgagt ggagcgacag       420
     aatcggaggt gtcgctaca                                                    439
//
ID   BEL-13_SiCu-I repbase;    DNA;    INV; 5928 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5928
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4987-4987 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..5911
FT                 /product="BEL-13_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MDGEGENGVVNVSQGASQIHDGDHDEGQQQQQNVRRS
FT                 SRPNLGHPPDRYGNWTETTPGSSTGQRAGAVSLPLEITRTPRPIFHSTPKD
FT                 SESKSHGGIGITPKAASIVGGDDNQSVASHASSVAELQKEIEVDEEELKKL
FT                 EERVLLKAENLSLKHTLLKMQRDLEKMEWSSWGEGHTQSYSGGDAASAVGL
FT                 GEEAAGGGGGXSRPSPRPRNLWKPAPTTNEDRHVPAGGGAGAKVASANVDQ
FT                 KVPVGGGAAARVGPANVDQHVPAGGGPGTRAPPVPRPRRVQIQPEGSQPPP
FT                 PPPXGVDALAGAILTALQSQNQQTERFVARQSSSSALPRFDGNPLDWPLFA
FT                 HHFRQSTADCGFSPTQNMSRLEKALRGEARRTVRSLMIIPTNTEAVMERLE
FT                 QRYGRPEYIIGALIDIAKKTPTPKESKLSTFLDFSNAIQNLVTTVETLQVP
FT                 AYRDNPQLMQELVEKLPDSFKIQWGLQKVRLGSAGANLLDFSDWVAEIAEA
FT                 ASVVSIPKFSWKERRDESSLTTEELPKMEPEAGGKQKSCVACQKEAHGLGA
FT                 CENFKKMTLADKWEFIKKNNCCFRCLRGGHSLKNCKSKWSCRVEGCTRRHH
FT                 TLLHGNPPSSSTGGKGQGSEDKKDGKVDELNATLVNSGGSTILRIAVVKLF
FT                 GPQGAKIVNALLDEGSTVTLLSADVAEELGLSGVVDPLRIKWTDGRSQTDN
FT                 SSRKVECSIGPYGGKQAFKLKNVRTVKNLVLPAQRTDLRDIVKQHPHLQTK
FT                 IVKVIPGERPLILLGQQHIHLTVAREVVEDDSDSPMLTKTMLGWVIHGPSK
FT                 GEQGEESTFLCHAETDDDILHNLVKESFALEAIGIRAAVSKRSKEDEAAED
FT                 KMAKMTHRVGNGTRWETGLLWRDEDVELPPSRDVAMRRLESIERKLRRDPE
FT                 LAKQYRGKISHYLEMGYARKLDKEELSLPSKVEWYLPHFNTTHPNKPGKIR
FT                 IVFDAASRARGVSLNDYLLTGPDLLVSLPGVLVKMRQRRIAIGGDIGEMFH
FT                 QVKIRPKDCPAQRFLWREHEDDVEPSTYQLEVMMFGSVCSPYCAQYTKNKN
FT                 AMEFQPDFPKAVEAIVKYHYMDDWLQSLDTEDEAIQLAKEVTEIHRRGGFI
FT                 IGKWSSNSDVVLRELGVDAKGTPTKDLAEWSEIPTERALGLHWIPGEDKFT
FT                 FRVNLERAGKGVATGEVIPTKRMVLRLVMLVWDPLGFLGHYLIKARILLQD
FT                 LWKAKLGWDDALTESQFKRWKQWIADLQKLSEVRIPRCYSSSASSSRQVSL
FT                 HIFADSSEAASCAIAYLRVVKEDGNVDVTMVMSKTRVAPVKPCSVPRLELT
FT                 AALIASRMGKFLLAELDIKIHEVLYWTDSMTVLRWINAEARRFQQFVAVRV
FT                 GEIQENTEQAQWRWIPSAENPADDGTRDGKADLGENSRWWNGPSFLKLDPS
FT                 EFPKIANGKEEGEELELRKEFVAVAVEAQHPYLPDEERFSTFLKLVRATAY
FT                 LLKFIGILKKEEPSQFLQTKKAESLLFRRSQWEMYPLEMQMLTRGDDLPRS
FT                 SRLFQLSPVLDKLGVLRMNSRLVSAKEEGIRMPVILHPKCRLTKLLLEHYH
FT                 RIFCHAGEDLVRNEVRQKFWIPNLRSAIRKVIRECLVCRKKRAQAQPPVMG
FT                 ALPDIRIQPQPRPFHICGMDYFGPMDVAVGRRHEKRYGVLFTCMNTRAVHL
FT                 EIAASLTTDSCIMAIRRMIARRGEPAQIFSDNGTNLRGAEKELRLALEELD
FT                 GERMTGELEAKGIEWHFIPPSAAHMGGSWERLVRSVKTAMATILKCRSPRE
FT                 EILQTVFAEAEATVNSRPLVDVPVDPESPEALTPFHFLIGTSSVKAAPGQF
FT                 EAERIGLEKQWRQAQALADLFWRRWVREYLPTLQRRAKWHQQRPSVEAGDM
FT                 VVVLDPSLRRNTWPLGLVTRTFPGKDGVVRVVEVKTSSGVYRRPVVKLGKL
FT                 DIKAATQEKGLTA"
XX
SQ   Sequence 5928 BP; 1630 A; 1351 C; 1718 G; 1223 T; 6 other;
     aagtggtcct tcgaggtatt tccttgacgc tccgtggtct acagttcaat catttggaga        60
     ccaataggtc agttgattga agccctcgag ccggacgaga atggacggtg aaggggaaaa       120
     cggcgttgtg aacgtcagtc agggagccag tcagatccat gatggggatc atgacgaggg       180
     tcaacagcag cagcaaaatg tccgtcggag cagccgacca aatctkggcc acccacccga       240
     cagatatgga aactggaccg aaaccactcc aggatcctcc acggggcagc gagcgggagc       300
     cgtttcgctg ccattagaaa ttaccagaac tcctcggcca atatttcaca gtactccaaa       360
     ggactcggaa agcaagtcgc atggaggcat cggtatcacc cctaaagctg ccagcattgt       420
     aggaggggat gataaccaat ctgtcgcctc acatgcatca tcggttgccg agctccagaa       480
     ggaaatagag gttgatgagg aggagttgaa gaaactggag gagcgtgtgc ttctgaaggc       540
     agaaaatctt tctctgaagc acacgttatt aaaaatgcag cgggatctgg agaaaatgga       600
     gtggtcaagc tggggtgaag gacacaccca atcctattca ggaggagacg ctgcatcagc       660
     tgtcggactt ggagaagaag ctgctggggg aggaggagga caktctaggc catcgccaag       720
     gccgagaaat ttgtggaagc cggctccaac taccaatgag gatcgacacg ttcccgctgg       780
     aggtggagct ggtgcaaaag tagcatctgc caatgtggac caaaaagttc ccgttggagg       840
     aggagcagct gcaagagtag gacctgccaa tgtggatcaa catgttcccg ctggaggtgg       900
     acctggtaca agagcaccac ctgtacccag gccaaggagg gtacagattc aacctgaggg       960
     gagtcaaccg ccgccgccac cgccgwctgg agtggacgcc cttgctggag ctattttgac      1020
     agcccttcag agccaaaatc agcaaactga aaggtttgta gcccggcaaa gctcatcgag      1080
     tgccttgcca agatttgatg gcaacccgtt ggactggccg ttattcgctc atcattttag      1140
     gcagtcaacg gcagattgtg gattttcacc aacccagaac atgtccaggt tggagaaggc      1200
     tctgaggggg gaagcaagga ggacggtgcg atcgctaatg atcattccaa ctaacacgga      1260
     ggcggtgatg gagcggctgg agcagcggta cggcagaccg gagtatatca ttggcgcatt      1320
     aatcgacatt gccaaaaaga cgccaactcc gaaggaaagt aaattgtcga ctttcctgga      1380
     cttctccaac gcaattcaga atctggtgac gacggtggaa accctccaag ttccggccta      1440
     cagggacaac ccgcagctca tgcaggaact ggtagagaag ctaccagatt ccttcaaaat      1500
     ccaatgggga cttcagaagg tcagactggg gtccgcagga gccaatttgc tggacttctc      1560
     ggattgggtg gccgagattg ctgaagcagc cagtgtggtt tccattccaa agttttcttg      1620
     gaaggaacgg agggacgaga gcagcctgac cacggaggag ttaccgaaaa tggaaccgga      1680
     agcaggaggg aaacagaaat catgtgtagc ttgccagaag gaagcgcacg gtcttggagc      1740
     atgtgaaaac ttcaagaaga tgaccctggc cgataaatgg gaatttatca aaaagaataa      1800
     ctgctgcttc cgttgcctcc gtggtggtca ctccctcaaa aattgcaaat caaaatggag      1860
     ctgccgggtg gaaggatgta ctcgtcgtca tcacacgctc ctgcatggga atcctccaag      1920
     ctccagtaca ggaggaaaag gccaagggtc agaagacaag aaggatggca aggtagacga      1980
     gctaaacgct accttagtca attctggggg aagtacaatt ctcagaattg ccgttgtcaa      2040
     gctgttcggt ccacaaggtg caaaaattgt taatgcgctt ttggacgagg gatccaccgt      2100
     aactctactc tcagctgatg tagctgaaga acttggactg tctggcgtgg tggaccctct      2160
     gaggattaag tggaccgatg gaagaagcca gacagacaac tcatcccgca aagtggaatg      2220
     cagtattgga ccgtacgggg ggaagcaggc attcaagtta aagaatgtac gtacggtcaa      2280
     gaatctcgtc ttgccagccc aaaggacaga cctgagggat atagtgaagc agcatccgca      2340
     tctccaaacc aaaattgtta aggttatacc tggagagcgg ccattgattt tactgggaca      2400
     gcagcacatt cacctcaccg tcgctaggga ggtggtggag gatgacagcg attcgcccat      2460
     gctgacgaag acaatgcttg gctgggtgat ccatggacct tcaaagggcg aacagggaga      2520
     agaatccacg ttcctgtgtc atgctgaaac agatgacgac atccttcata atttggtgaa      2580
     ggagtcattc gccttggaag ccattggaat cagagctgct gtctccaaaa ggagtaaaga      2640
     agatgaagct gcagaggata aaatggcaaa gatgacccac cgtgttggaa atgggactcg      2700
     gtgggagacg ggattgttat ggcgggatga ggacgtggag ctgcctccaa gccgtgatgt      2760
     cgccatgcgc cgcttggaga gcatcgaaag aaaattaagg agggaccctg aacttgcgaa      2820
     gcagtacagg gggaagatta gccactacct ggaaatgggt tacgccagga agctggacaa      2880
     ggaggagtta tcgcttccta gcaaagttga gtggtaccta ccccacttca acaccacgca      2940
     tccgaataag cctggaaaaa ttcggatcgt gtttgacgct gccagccgtg cgagaggagt      3000
     tagcttaaac gactatttgc taaccggacc tgatttgctc gtatcactcc ctggcgtgct      3060
     ggtgaaaatg cgtcaaagga ggatagcgat tggtggcgac attggagaga tgtttcacca      3120
     ggttaagatt cgtccgaagg attgtccagc gcaacggttt ctttggaggg aacatgaaga      3180
     cgatgtggag ccctcgacct accaactgga ggtcatgatg tttgggtcag tgtgctctcc      3240
     ctactgtgcc caatacacca aaaacaagaa tgccatggag ttccagccag acttcccgaa      3300
     agcagtggag gccatcgtca aataccacta tatggacgat tggctgcagt cgctggacac      3360
     tgaggacgaa gcaattcaat tggcgaaaga agtcactgaa atccataggc gsggtggctt      3420
     catcattggg aaatggtcca gcaactcaga cgtggtactg agggaactcg gggtagacgc      3480
     taaaggaact ccaaccaaag atctcgctga atggtcggaa attccaaccg agagggcact      3540
     ggggcttcat tggataccgg gggaagataa attcacgttc cgggtgaatt tggagcgagc      3600
     aggaaaagga gtagctactg gagaggtcat ccccacaaaa aggatggtgc ttcgccttgt      3660
     gatgttggtt tgggatccgc ttggcttttt gggacactac ctcatcaaag ccagaatcct      3720
     gttgcaggac ctgtggaagg cgaagttagg atgggatgac gctctcacag agtcccagtt      3780
     caaaagatgg aagcaatgga tagccgactt acagaagttg tctgaagttc gcattccaag      3840
     atgctactcc tcctctgcaa gttccagccg ccaagtctcg ctccacatct ttgcagacag      3900
     tagtgaagcc gccagttgtg ccattgccta tcttcgtgtc gtaaaagaag atggcaatgt      3960
     tgacgttacc atggtgatgt caaaaaccag agttgctcca gtgaagccgt gttctgtgcc      4020
     caggctcgag ttgactgcag ccctcattgc ctcaaggatg gggaaatttc tcttggcgga      4080
     gctggatatc aagatccatg aagtcttgta ctggacagac tccatgacag tcttgcggtg      4140
     gatcaacgca gaagcaagac gattccagca gtttgtggca gtcagagtgg gcgagatcca      4200
     ggagaacacg gaacaggcgc agtggaggtg gataccatca gcagaaaacc cagctgatga      4260
     cggtaccaga gacggaaaag cagaccttgg ggagaactct cgctggtgga atggaccgag      4320
     ctttctcaaa ctggaccctt ccgaattccc aaaaatcgct aatgggaagg aggaagggga      4380
     ggagctcgaa ttgcggaaag aatttgttgc tgtagccgtt gaagcacagc acccatatct      4440
     accagacgaa gaaaggttct ctacattcct caaattggta cgagccactg cgtacctact      4500
     gaaatttatt gggatactga aaaaagaaga gccgtcccag ttcctgcaga ctaagaaggc      4560
     cgagtcgctg ctgtttcgga ggagccagtg ggaaatgtac ccactggaga tgcaaatgct      4620
     gacaagagga gatgaccttc caagaagtag ccgcctgttc cagttgtcac ctgttctgga      4680
     caaactggga gttctgagaa tgaactcgcg ccttgtgtct gccaaggagg aggggatacg      4740
     gatgcctgtc atactacatc cgaaatgcag gctgacgaag ctacttctgg aacactacca      4800
     ccgcatcttt tgtcatgctg gcgaggactt agtacgaaac gaagtccgac aaaaattctg      4860
     gattcccaac ctgagaagcg ccatcaggaa ggtcataagg gaatgcctgg tctgtaggaa      4920
     gaagagagct caagcccagc cgccggtgat gggtgccttg ccagacatta ggatccagcc      4980
     gcagcctcgc ccatttcaca tctgtggaat ggactacttt gggccaatgg acgttgcagt      5040
     kgggagaaga cacgaaaagc gatacggtgt cctctttacg tgtatgaata cacgtgcagt      5100
     ccatttggag atagctgcca gcctcaccac ggatagctgc atcatggcaa ttcgtaggat      5160
     gattgccaga agaggtgaac ctgcccaaat ctttagtgat aacgggacaa acctgcgwgg      5220
     ggctgaaaaa gaactgcggc tggcgctgga ggaactggat ggcgaaagga tgactggcga      5280
     attggaggcc aaaggaattg aatggcactt cattcctccc tcagcagctc atatgggggg      5340
     aagctgggaa cgtcttgtga gatcggtcaa gacagccatg gccaccatcc tgaaatgcag      5400
     atcaccaagg gaggagattt tgcagaccgt ctttgctgaa gcggaggcta ccgtcaatag      5460
     tcggccgttg gtggacgttc cagttgatcc agaatctcca gaggccctaa ctccgttcca      5520
     cttcctcatt ggaacgtcga gtgtaaaagc agcgccaggc caatttgaag cagaaagaat      5580
     tggtctggag aagcaatgga gacaggcgca ggctctagca gatctctttt ggaggcgatg      5640
     ggtacgagag tacctcccca ctttgcagcg cagggcaaag tggcatcaac aacggccatc      5700
     tgtggaagct ggagacatgg ttgtggtgct ggatccaagt ttaaggagga atacttggcc      5760
     attgggactg gtgactcgga catttcctgg caaagatggg gttgtccgag tcgtggaggt      5820
     gaagaccagt tccggagttt accgaagacc tgtggtcaag ctcggaaaac tggacatcaa      5880
     agcagcaacg caagagaaag gattaactgc gtgaatcagg gggaagaa                   5928
//
ID   BEL-13_SiCu-LTR repbase;    DNA;    INV; 671 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-671
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5010-5010 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 671 BP; 183 A; 114 C; 115 G; 258 T; 1 other;
     tgttgctgcg gattagttaa attatattga tagttcaata gttttcattt cgatgtattc        60
     atttgcctaa aatattgaat acttaatgta aattatggag tttttctttc ctactttctt       120
     ttctccaaat tatgtatagt atttccggta agaaagtaga ggtttttgta atttgtttaa       180
     tttttctctc tttatgaaaa ttcatgaaga agttcgagtt agtttctttg ttttaaaatt       240
     tcatgaaatc tatttttaga acgattgtaa cttttcaccg gaagttagaa atattaagtt       300
     aacattcctc ccggaagtcg tcgcagtata aatagcggga ggaaactcta gtwatcattt       360
     attcttgttt ggacagccag tcctacaaca tcactcttct ttggcactca gcctaagaaa       420
     tagctatacg gtcatttctg gaaacagttt gaccaagagg taacttgtgc cgtcacctgc       480
     aagttttcct agttaataaa tcaatcgttc tataactttg tcttctttac attgttattt       540
     atttgggagg ctggattctt ttgcctacag gaattccagt ctcagcataa acacactctt       600
     ttgttgccca gttggcaaac gtcctattta cacggactta tcatttttct gggttatcga       660
     agggggcaac a                                                            671
//
ID   BEL-13_SpEx-I repbase;    DNA;    INV; 5858 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5858
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6893-6893 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           580..5826
FT                 /product="BEL-13_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADTLKTLLRKRSALKSKLTIYSNFINLVKSSAHISE
FT                 MQRLDLQERFNKFDSLHSQFDELQTEIELLADDAETAFVEREEFDRQFFNL
FT                 VALTRSLLGSSVNGAGSEAGFKDADSGAHVSNSFVRLPKIDLPHFDGNYQC
FT                 WLEFRDTFTSLIHSNNSISNINKFHYLRASLQGTAASLIKNIEFSSEHYKI
FT                 AWDLLCERYNNEYLLVANHLQALFFDVNPINKESSVSIRNLVDVINKNIRA
FT                 LTNLKRPTQHWDDIIIFVMVKRLDLITSREWEEYRNNNIVGYPTTTQFCSF
FT                 LNRKADWLESVESNFQNSNIVALNSNTNLNKHNNSSLKPKNSNKSNNNSHK
FT                 NNNKCPLCSQAHTLYKCESFRSLSIENRIQKAKDLTACLNCLRIGHSANHC
FT                 KFSNCRYCKLKHNTLLHLEASETKPLSNPLPSALLSVSPTTSDVALSADSM
FT                 QLATSSHVFLSTALVNVTSATGKKYTARLLLDNGSTANFVTQSLAEKLGLS
FT                 QRGMSTKVTGINNHVSTSTQSCHLSIESLCCAFTVDIDCHVLPEITKVLPS
FT                 SFVNIKHLSFPSGLTLADPNFNVPSAVDILVGAEVFWNVIGSNTIDLGKNL
FT                 PKLCETKFGWLVSGSISHQSSYLSSASTHFCHHSSVTPDLTQFWELDQVSS
FT                 KHSLSLEERMCEQHFVETTVRKSDGAFVVKMPLKEDPSSLGHSYVHARNRF
FT                 LSLERRFKHDPSFHSKYNDFLREYERLGHMTLDTGCTPSPENSITKYFIPH
FT                 HGVIRDSSTTTKLRVVFDASAPTSTGVSLNDIQMVGPVVQDDLFSILTRFR
FT                 QHRYVVSGDVEKMYRSIELSPDQRSLQKIIFRFDPSEPFRSYTLNTVTYGT
FT                 ASAPYLATKCLVSLADNIEDNRVKSAIRRDFYVDDYLSGGSTISDTVDVTK
FT                 AVRSVLSSAKFNLRKWRSNNVEILKQINSEVYDNDTNNTLKFSEHGLNPAQ
FT                 SKTLGLNWVCDSDSLTYTINITSANKVTKRHILSVISQIFDPLGLVGPCVV
FT                 EAKILMQRLWLNKYDWDDAVSLEVRDVWSLFESTITALNHLKIPRWVLHEG
FT                 SIAHEVHVFTDASEKAYGACVYIRSCNSVGATGVQLLVSRNRVAPIKPTTI
FT                 PRLELCGALLGARLCTRVQESLTIPISKCRFWCDSTIVLGWLSTPSNQLKP
FT                 FVRNRVNEIQESTCGHTWSYVPSKDNPADLVSRGLRADIIKETPLWWSGPS
FT                 FLLRNESEWPIMPNTEKHDLPEVVTHLNINSNNNSYNVHHTDVTSHSSFIH
FT                 NLLLKYSSLTKIQRIFTYIQRFIYNLKHKNNKLCGNLSLLELENSLTAIIK
FT                 FSQQQMFPEDYQLLKTKQKLPRKSRLLPLTPFIDNYGLIRVGGRLDNSPYD
FT                 FNVRHPILLCSKHILTKLIFQMQHLKLAHAGPQLLLSHIRQSYWPLGGRSL
FT                 SRFIVSKCLKCYRHKAQNVQPVMGQLPSSRTNFEFPFLNSYVDYAGPVLIA
FT                 DRKGRGCKLTKAYMCIFVCSAVKAVHLELVTDLTTEAYMAALNRFVARRGK
FT                 PRSITSDNGTNFVGASNEMTKFLNASNVASKMAQEGIEFIFTPAYSPHFNS
FT                 LAEAAVKSCKHHLKRLLSLTHFTFEELSTCLTHIEAVLNSRPLTPLSSDPN
FT                 DYSALTPSHFLIGRPLLSVPCSQVTDANITSLDRWKRIQYIRQHFWGRFHN
FT                 EYTSLLQAKSKWFHSRGELKPGSLVLIKDKTTPPLLWSLGRVTKTYPGVDG
FT                 VTRVAELKTRRGTIRRAFNCICPLPIEDS"
XX
SQ   Sequence 5858 BP; 1651 A; 1274 C; 1164 G; 1769 T; 0 other;
     gttttggtcc ttcgatataa ttaacgccag tcgtgtcgtt aaaaattcgt cgatttcaca        60
     tcattttttc aacgatcaac ggtcatcgcc ggtgccgcgt ggaacttcaa cgtggccatc       120
     gaacacaaag aagacgaaga agtcgtcccc gtgcagcgtg cttcgcctta taaggagctg       180
     aagtcatttt ctgggagtat aactacttat ttgagtgagc cgttccaatt tagttaattt       240
     tttccgattt ttttcttagt gaataatcgt cttttcctgt ttatttcgtt gagcaagtac       300
     atttccccct ttacaagtgc tttattgcta atagtgcttt aacgtagtgt ttatttcgac       360
     gcttcttcat atttgcatag tttgtagcaa catttgtgcg cgcacgccac tcaggtgtta       420
     acgtaacctt gacctatctc agttattaaa accggtccct tttgtttgcg cgcagctgtt       480
     ttttctataa gaagctcatt agtggtattt atcgccttac tgcatttaat tttaataaaa       540
     cccgttttct tttttttgct ttgttaattg cacttcaaaa tggcggacac tttaaagact       600
     ttgcttagaa aacgtagtgc attaaaatca aagcttacga tttacagcaa ctttataaat       660
     ttagttaaaa gtagtgcaca tatatctgag atgcagcgat tagacctgca ggaacgtttt       720
     aataagttcg attccttaca tagtcaattt gatgaattgc agacagaaat cgaattgctt       780
     gccgatgatg ctgagactgc gttcgtggag cgtgaggagt ttgaccgcca gttcttcaat       840
     ctggtggcac tcacgcgcag cctgctcggc tcttcggtca acggagctgg ttcagaggcg       900
     ggcttcaaag atgctgactc aggtgcacat gtttccaata gctttgttcg tttgccaaaa       960
     attgatttgc ctcactttga cgggaactac caatgctggc tcgagttccg ggacacgttt      1020
     acgtcattga ttcacagtaa caatagtata agtaacataa ataaatttca ttacttgcgt      1080
     gcttctttac aaggaactgc agcctcttta attaaaaata tagaatttag tagtgaacat      1140
     tataagattg cttgggactt gttgtgcgag cggtacaaca atgagtacct gcttgtggcc      1200
     aatcatttgc aagctttatt ctttgatgta aacccaataa ataaggaatc tagtgtttct      1260
     attagaaatc ttgttgatgt aataaacaaa aatattcggg cactaacaaa cttaaaaagg      1320
     cccactcagc attgggatga catcatcatt tttgtcatgg tcaaaaggct agatttaatc      1380
     acaagccgtg aatgggagga atataggaat aacaacatag taggttatcc aacaactact      1440
     caattttgtt cctttctaaa caggaaagca gactggttgg aatctgtgga aagtaatttt      1500
     cagaatagta atattgttgc cttgaatagt aacactaatt taaataaaca taataatagt      1560
     tcattaaaac ctaaaaactc aaataaatca aataataact ctcacaaaaa taataataaa      1620
     tgtccacttt gctcccaagc acatactttg tataaatgtg aatcttttag aagcctatct      1680
     atagaaaatc gcatacaaaa ggcaaaagac ttaactgctt gtcttaactg cttacgcatt      1740
     gggcattctg ctaatcactg taagttttca aattgcagat actgcaaact taagcacaat      1800
     acgcttttgc atttagaagc tagtgaaacc aaacctcttt ctaatcctct gccttctgca      1860
     ctgctttctg tatcgccaac tacttcagat gttgcgcttt cagctgattc tatgcagctt      1920
     gctacttctt cgcatgtttt cctgtccaca gctttggtga acgtgaccag tgcgacgggt      1980
     aagaagtaca ctgcgcgcct actgctggac aacggcagta cggcgaactt tgtcacgcag      2040
     agcttagcgg agaaactggg tttgtcacaa cgcggtatga gcaccaaggt aacgggtatt      2100
     aataatcatg tatccaccag tacacagtct tgtcacctct ctatagagtc tttatgctgt      2160
     gcctttactg tagacatcga ttgccacgtt ctacctgaga ttacaaaggt cctaccatct      2220
     tcgtttgtga atattaaaca tttatccttt ccttcaggcc ttacattggc agacccgaac      2280
     tttaacgttc cgtcggctgt cgacattcta gtaggggctg aagtattttg gaatgtcata      2340
     gggtcaaaca cgatagactt aggaaaaaat ctacctaaat tgtgcgaaac taaatttgga      2400
     tggcttgtat ctggtagtat ttcgcatcaa tctagttatc tttcctctgc ttctactcac      2460
     ttttgccatc attccagcgt cactcccgac ttaacccaat tttgggagct tgaccaagtc      2520
     tcatcaaaac attcgctctc ccttgaagag agaatgtgtg aacaacattt tgtagaaacc      2580
     accgtccgta aaagtgatgg cgcgtttgtt gttaaaatgc ctttgaagga agatccaagc      2640
     tctctaggac attcttacgt acatgctagg aatcgttttc tttccctaga gcggcgattt      2700
     aagcatgatc cttccttcca cagtaaatat aacgatttct tgcgagagta cgagcgctta      2760
     ggtcatatga cattagacac gggctgtact ccttcacctg aaaattccat aacaaaatat      2820
     ttcattccac atcatggagt cattagggat tctagcacca ccaccaaact acgcgtagtc      2880
     ttcgacgcat cagcccctac aagtacggga gtgtcgctta atgacattca gatggtcggt      2940
     ccggtagtgc aagacgatct gttttctatt ttgacacgtt ttcgtcagca taggtatgtg      3000
     gtctcaggtg acgtggaaaa gatgtacaga agtatcgagc tcagtccaga ccaacgctct      3060
     cttcaaaaaa ttatttttcg ttttgatcca tcagaacctt ttagatccta cacgctaaat      3120
     acagtgacgt acggtactgc gtctgctccc tatttagcca ccaaatgttt ggtaagtttg      3180
     gccgataaca ttgaggataa tcgggtaaag agtgccatac ggcgcgattt ctacgtcgac      3240
     gattatttaa gtggggggag caccatatct gacactgtag atgtaacaaa agcagtaaga      3300
     tcagttcttt catcggctaa atttaattta cgcaaatggc gatcaaataa cgtagaaatt      3360
     ttaaaacaaa ttaattcaga ggtatatgac aatgatacta ataacactct taaattttct      3420
     gagcatggtc tcaacccagc tcaatctaaa acccttggtc ttaattgggt ttgtgactct      3480
     gattcactca cttacacaat aaatataacg tctgctaata aagtcactaa acgtcacatc      3540
     ctctctgtta tcagtcagat tttcgatcca ctgggcctcg taggtccgtg cgttgtcgag      3600
     gcgaaaatac taatgcagcg tctttggctg aataaatacg actgggatga tgcagtatcg      3660
     ctcgaggtaa gggacgtttg gtctttgttt gagagcacaa taacggcgtt aaatcattta      3720
     aagattcctc gttgggtttt gcatgaaggc tctattgcac acgaagtaca tgtttttacc      3780
     gacgcgtccg aaaaggcata tggcgcttgt gtgtacattc ggtcatgtaa tagtgttgga      3840
     gctacaggtg tacaacttct agtttccaga aaccgtgttg cgcccattaa acctactacc      3900
     atcccgaggc ttgagctttg tggagcattg ttgggtgcaa ggctgtgtac tagggttcag      3960
     gaatctctca ccatccccat ttccaagtgt agattctggt gtgactccac tatagttttg      4020
     ggttggctct ctactccttc taatcagtta aaaccttttg ttagaaatag agtaaatgag      4080
     atacaagaga gcacatgtgg tcatacctgg agctacgtac cgtcgaagga caacccggct      4140
     gatcttgttt ctcgtggtct ccgggccgat attataaagg aaacacctct gtggtggtcc      4200
     ggaccttctt ttttattacg taatgaaagt gaatggccca taatgccaaa cactgagaag      4260
     catgatttgc cggaagtagt gactcatttg aatattaata gtaacaataa ttcatataat      4320
     gttcatcaca ctgacgtcac ctctcattca tctttcattc ataacttgct attaaagtac      4380
     tctagcctaa ctaaaattca aagaatattt acatatatac aaaggtttat ttacaattta      4440
     aaacacaaaa acaataagtt gtgtggcaat ctttcattgt tagaactaga aaattcatta      4500
     actgcaatta ttaaattctc acagcaacaa atgttccctg aagactatca acttttaaaa      4560
     actaaacaaa aattgccacg caaaagtaga ttacttcctt tgacgccttt cattgataat      4620
     tacggactta ttcgcgtagg cgggaggctt gataactccc cctatgactt caacgtgagg      4680
     caccccattc ttttatgtag taagcacatt cttaccaaac ttatttttca aatgcaacat      4740
     ttaaagcttg ctcatgctgg tccacagctg ttactgtcgc acattcgaca atcttattgg      4800
     ccgctaggtg gtagaagctt gtctagattt attgtgagta aatgtcttaa atgttacagg      4860
     cataaggctc aaaatgtgca gcctgttatg ggtcaactac catcatctag aactaatttt      4920
     gagtttcctt tcttaaattc ttatgttgac tatgccgggc cagtattgat tgccgaccgc      4980
     aagggacgtg gttgcaaact aacaaaggcc tacatgtgca tctttgtttg ttcggcagta      5040
     aaagcagtac atttggagct cgtcacagac ctcaccacgg aggcttacat ggccgcacta      5100
     aatcgtttcg tggcgcgtcg aggcaagccc cgaagcatca cgtccgataa cgggactaac      5160
     ttcgtaggcg cgtctaatga aatgaccaaa tttcttaacg catcaaatgt tgcatcgaaa      5220
     atggcgcagg aaggaatcga atttatcttt acgcctgcat acagtcctca tttcaattca      5280
     ctcgctgaag ctgctgttaa atcttgtaag caccatctga aaagattgct tagtcttaca      5340
     cacttcactt ttgaggaact gtcgacttgt ctcactcaca tagaggcagt gttgaattca      5400
     cgccctctta cacctctctc ttctgaccct aacgattatt cagcactcac accatctcat      5460
     ttcctaattg gacgaccact cttatctgta ccatgctctc aggtgacaga tgccaacatc      5520
     acgagcctgg atcgctggaa gaggatccag tacatcagac aacacttttg gggacgcttc      5580
     cataatgagt acacttctct gctgcaggcc aaatcaaagt ggtttcattc cagaggcgaa      5640
     ttgaaaccag ggtccttggt cctgatcaag gacaagacga cgccaccgct gctctggtcc      5700
     ctgggtcggg tcactaagac ctatcccggc gtcgacggag tcacgcgggt ggctgaactg      5760
     aagacgagga ggggcaccat tcgtcgtgcc ttcaactgca tctgcccgct cccgatcgaa      5820
     gactcttgaa gaacgagcat ccttcaaccc ggggagta                              5858
//
ID   BEL-13_SpEx-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-240
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6921-6921 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 240 BP; 45 A; 68 C; 68 G; 59 T; 0 other;
     tgtcggcgca cctcatcgag caacagcgat ggcgaccgaa gggagtgctg cggaggccgg        60
     ggcgggggga gccccggctg gcgagcccgc ggccgcgctt ccttcacttc tctctgcgac       120
     gcgcttgacc acgggcactt acttgttttc atgtgttgac cattgttaat ttaacggcat       180
     taaagcctat gttatacagt ccactagctt tatttataaa gtcccgttag ggctcctaca       240
//
ID   BEL-13_TrNi-I repbase;    DNA;    INV; 6049 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6049
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1020-1020 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           765..6026
FT                 /product="BEL-13_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MASEGSDKPASKSSLRELLAKRSSIKGQITKFKNYLD
FT                 KVCSLKEISTIELAELDLKLNKFQGLSARFDNIQSEIEVINSSSIDSELDE
FT                 RERIEHDFVQYIAIAKTELQKYTIDDDSKRRQSIMIHADSDHQNISFRLPK
FT                 IQISKFDGSYFRWLEFRDTYVSLVHKNDRIQDIHKFHYLVSYLEGDAARII
FT                 CNLEISSANYKEAWNLVCERYDNERILIDYHLDSLFNVHQLTRESDKSLRY
FT                 LVDNITKNLRALNSLGLSTDNPACDYMVIFLLSAKLDNRTTQKWQEFRNTL
FT                 GKIPNLDQFKKFLIDRANVLESLIRNKSLNNYNNSTKQTQSSNPSTSNNKF
FT                 INKSNRFQNTNSFASPSTSQASNNTSKVYLCVVCNGNHRIYNCPDFQSKSI
FT                 AERIACVSKYKLCKNCLRQGHPASECSMGSCRQCNQRHNSLLHDPSVSAHC
FT                 TSGTTDDSNIETVAAFSRQKNHHVLLSTAIVEVYNSINNKSEKVRALLDSG
FT                 SQSSFITKALQQKLGLKCNTINPLNVIGIGNNKCDKIIESCNTYLKSIQGT
FT                 YQMNLSCYILHQLTGDIPKVPVDIHDLKIPKGIVLADPKFNEPAPVDMLIG
FT                 ADVFWDILVGEQRSLGPNNPKLQNSKLGWIVAGPINSEKFIHNTQCNHATI
FT                 SNNELHDMLTRFWEIESLPQRRILSPNEIACENHFLKNTFRLSNGRFCVRL
FT                 PLKESPNCLGDSYNQAKKRLLNLEKRFRKNPTLKSQYVEFIREYSELGHLS
FT                 ESPISIPNPSYFLGHHAVFKEDSESTKIRVVFDGSAPTASGYSLNDILMIG
FT                 PNLQNSLFSILVRARQYKYILTGDIAKMYRQIAVAQEDCNLQLILWREDES
FT                 HPIQTLRLGTVTYGTASASYLSTKCLWQVGEECDDELIKTIIQNDFLVDDV
FT                 ITGSDSESQLKYIQKALTTTLNSACFPLRKFKTNLPELFHNIVEINTKDKL
FT                 TLSESSSTLGLGWDPENDTFHIPVKINSINSNDLITKRFITSQSFKIFDPL
FT                 GLISPCIIQAKILIQRLWRKDIDWDQPVPDDLKENWYEISKNLPLLAELHI
FT                 SRKVICDSPKFIELHSFCDASQVAYGACIYMRSLNENNEVTVRLLCSKSKV
FT                 APVKPTTIPRLELCAALLAANLCKSVTDSLRLTPSKITHWCDSNVVLCWIN
FT                 NDPSKLKTFVANRTSEILDLTDRKSWRYVPTDANPADLISRGVNACQLHDN
FT                 TMWWQGPSYLYSDESQWPILNPNKSSDLLEIKAHYINLPESSFDFKDFSNF
FT                 TKLQRVFAYVLRFLHNSKQSNKHNKLSGFLTANELNNAFNFICRVVQKQSF
FT                 SSEYKILLANKILSSKSKLLSLSPFFDSTAQLIRVGGRLDNSNYSFNKKHP
FT                 VLLDSSHYVTKLYFIREHLKHLHAGPQLLLATVRDSVWPINGRKLARRVVN
FT                 QCFTCVRVRGQTLNPKMGNLPAHRISIDYPFKSVGVDYAGPFFILNRKGRG
FT                 AKLSKCYLCLFICLRFKCVHLEPVSDLTKESFIMTLRRFVARRGLPAEICS
FT                 DNGRNFVAAAKEISHFLKNNSQSLSEFATGEGIKFSFIPAYSPHFGGIWEA
FT                 GVKAAKYHIKRVMGNTHLTFEELCTLFAQVEAVLNSRPLCPMSSSPDDFLS
FT                 LSPGHFLIGRPLNALPTPALDDCKATHLQRYARLEQIRRDFWNRWRREYIS
FT                 ELQLRTKWKSNTTRLNIGDLVLLHEENVPPLSWRLGRVVQLFPGPDGIPRV
FT                 ADVRTSRGQLRRSLIRLCPLPTSDCLSSDFKVEA"
XX
SQ   Sequence 6049 BP; 1893 A; 1215 C; 1087 G; 1853 T; 1 other;
     agattttggc gaccgtgaca ggacgatttc aagaatctgc agagttggaa atatcatcac        60
     gggtgtcgtc atactcggtg atacaaaatt caacagaaat cgaagatttt ggtgttggag       120
     gctatccttg ccttcctggt caacgaatca gccaaagatc gtgccggaaa gccgatattc       180
     ttcagcttca gcgtcaagtt aagtgccatc ctttgttccg ttatttcatc caaattccac       240
     aatttccaaa ttccataccc ataaatccat tcttaattac ctatattcca gtgaataacc       300
     tctatttgtg ctattttctt tagtttatac aagttttggt gcaaaagtaa acttcggtaa       360
     acgtgctacc gtataccgtg cacaacaaaa atatatttta ttttcgttat ttcccaaagt       420
     ttcgagcatt tatatgctaa tctacgtatt cataggttaa cagccaacag tggacaataa       480
     tttaattggt ttttccgtca tatttagatc gatttgccga aagtttcaga aatcactctg       540
     tgagaacaag tggggtccaa agtccatcac tgccagttcg tgtgttggga gaagtgtttc       600
     cagccgagac cggcttccca gtggttttcg ccgagaggag gaacgtgaga atacataagc       660
     tttattcctt ttcttaacta gttgaacttt gtcgataccg aaacatttca taagattgca       720
     gtgttccata ttttaaagtt atatacacag atttattgtt caaaatggca agcgaaggta       780
     gtgataagcc tgcttcaaag tcatccttaa gagaattgct tgcaaaacgc agttctatca       840
     aaggacaaat caccaaattc aaaaattact tggacaaagt ttgtagtttg aaagagatat       900
     ccacaataga acttgcggaa ttagatttaa aattaaataa atttcaagga ttatcggcaa       960
     ggtttgacaa tatacagagc gagattgagg ttattaattc ttcaagtatt gactcagaac      1020
     ttgatgagag ggaacgcatc gagcatgatt ttgttcaata cattgctata gctaagactg      1080
     agctacaaaa atacacaata gatgatgata gtaagcgtcg tcaatctatc atgatccacg      1140
     cggactctga tcatcaaaac attagtttcc gtttaccaaa aattcaaatt tcgaaatttg      1200
     acggttctta tttccgttgg ttggagttta gagacacata cgtcagtctg gttcacaaaa      1260
     atgatcgcat tcaagacata cacaagtttc attacctagt gtcatatcta gagggtgatg      1320
     ctgctcgtat tatatgtaac cttgagattt cttcggctaa ttataaagag gcttggaatc      1380
     tggtttgcga gcgatatgat aatgaaagaa ttcttatcga ttatcatcta gattccttat      1440
     ttaatgtgca tcagctgacg cgtgagtcag acaagtcact gcgttactta gtagataata      1500
     tcactaaaaa tctaagagct ttaaatagtt taggcctaag cacagacaat cctgcctgtg      1560
     attatatggt cattttcctg ttatcagcta aattggataa tcgtaccacg caaaagtggc      1620
     aagaattccg caatacttta ggtaaaatac caaacttaga ccaattcaaa aaatttctta      1680
     ttgaccgagc taatgtcctt gaatctctta tccgtaacaa atcattaaat aattataata      1740
     atagcactaa acaaacacaa tcatcaaatc catctacttc caacaataaa tttattaata      1800
     aatcaaatcg ttttcaaaat actaattcat ttgcctctcc aagtacttca caagcaagta      1860
     acaatacttc taaagtttat ctttgtgtcg tatgcaatgg aaatcacaga atttacaatt      1920
     gtccagattt tcaatctaaa tctattgcag aaagaattgc atgtgtgtct aaatataaat      1980
     tgtgcaagaa ctgtttgcga caaggtcatc ctgcttctga gtgctccatg gggtcgtgta      2040
     ggcaatgtaa ccaaaggcat aattctcttc tccatgatcc tagtgtgtct gctcactgta      2100
     caagtggcac caccgatgat agtaacattg agactgtcgc agcgttctca cgacaaaaga      2160
     atcatcatgt actcttatct actgcaatag tagaagttta taattcaata aataacaaat      2220
     cagaaaaggt ccgggctttg ctggatagcg gcagccaatc ttctttcatc accaaagctc      2280
     tgcaacaaaa attgggctta aaatgtaata caataaatcc attaaatgtt attggaatag      2340
     gtaataataa gtgtgataaa ataatagaaa gttgtaatac ttaccttaaa tcaatccaag      2400
     gtacttacca aatgaatttg tcttgctaca ttcttcatca actcaccggt gacattccaa      2460
     aggtcccagt tgatattcat gacctgaaaa ttccaaaagg tatcgtatta gccgatccta      2520
     agttcaatga acctgctccc gttgatatgc tcatcggagc agatgtgttc tgggatatct      2580
     tagttggcga gcagcgctct ctaggtccca acaatccaaa attacaaaat tcaaaattgg      2640
     gctggattgt agctggtcca attaattctg aaaaattcat acataatact caatgcaatc      2700
     atgcaactat ttcaaacaac gagctacacg atatgctcac tagattctgg gaaatcgaga      2760
     gtcttcccca aagaagaatt ctcagcccca atgaaattgc ttgtgaaaac cattttctaa      2820
     aaaacacatt ccgtttgagc aatggcaggt tttgcgtcag gttaccacta aaggaatccc      2880
     caaactgtct cggtgactca tacaatcagg caaaaaaacg tcttcttaat cttgaaaaaa      2940
     gatttaggaa aaatcctaca ttaaagtcac aatacgtaga attcattcgt gaatattcag      3000
     aattaggtca tctttcagaa tcacctattt caattccaaa tccttcatat tttctaggtc      3060
     accatgctgt cttcaaggaa gacagtgagt ccactaaaat cagagtggtc ttcgacggct      3120
     ccgctcccac tgcctctgga tactctctga atgatattct catgatagga cctaatttac      3180
     aaaattctct tttttccatt ttggttagag cgcgtcaata caagtacatt cttactgggg      3240
     acatagccaa aatgtacaga caaattgctg tggcccagga ggattgtaac cttcaattaa      3300
     tattatggag agaagacgag tctcatccta tccaaactct gagactaggt actgttactt      3360
     acggtactgc aagtgccagt taccttagca caaaatgtct ttggcaggtg ggagaagagt      3420
     gcgatgatga attaataaaa acaataattc aaaatgactt tctagtcgat gacgtgatca      3480
     ccggctcaga tagcgaaagt caactaaaat atattcaaaa ggccttaact actactctaa      3540
     attcagcttg tttcccattg cgaaaattca aaactaactt acctgaatta tttcataata      3600
     tcgtcgaaat taatacaaaa gataaactta ccttaagtga gtcttccagt actctcggcc      3660
     tcggctggga tcctgaaaat gacacattcc atatacctgt aaaaataaat tctataaatt      3720
     caaatgattt aattactaag agattcataa cttcacaatc ttttaaaatt tttgatccac      3780
     ttggcttgat aagtccgtgc ataattcaag caaaaatact catacaaagg ttgtggcgca      3840
     aggacattga ctgggatcag cctgtgcctg atgatttaaa ggaaaattgg tatgaaattt      3900
     ctaaaaactt acctttgctg gcagaacttc atatttcacg taaggttatc tgtgattcac      3960
     caaaattcat tgagcttcac tcattctgtg acgcttcaca agtcgcgtac ggggcttgta      4020
     tctacatgag atcgctgaat gaaaataacg aggtaacagt aaggcttcta tgctcaaaat      4080
     ctaaggtggc tccagtgaaa ccaaccacaa tacctcgcct cgagctgtgt gcagcgttat      4140
     tggcagcaaa cttatgtaaa tccgttaccg atagcttaag actaactcct tcaaaaatta      4200
     cacattggtg cgattctaat gtcgttcttt gctggatcaa caacgatcca agcaaactaa      4260
     aaacttttgt tgcaaataga acttctgaaa ttctagatct tactgatcga aagtcatggc      4320
     gttatgttcc tactgacgca aatcctgcgg atttaatttc acgtggtgta aatgcttgcc      4380
     agctccacga taataccatg tggtggcaag gtccatctta tttgtatagt gatgagtcgc      4440
     aatggcctat attaaaccca aacaaatcta gtgatttact tgaaattaaa gctcattata      4500
     ttaatttacc tgagtcttct ttcgatttta aagatttttc aaattttact aaattacagc      4560
     gagtatttgc atatgtttta agatttttac ataattccaa acaatcaaat aagcacaata      4620
     aattatctgg atttttaaca gcaaatgaat taaataatgc ctttaacttt atttgtcgag      4680
     tcgtgcaaaa acaatctttt tcttctgaat ataaaatatt gcttgccaat aaaatattgt      4740
     cctcaaaatc taaattatta agtttatctc cattttttga ctccactgct caattgatta      4800
     gggttggtgg gagattagat aattctaatt attcgttcaa taaaaaacat ccagtactgt      4860
     tagattcttc tcactatgtg acaaaacttt attttatacg cgaacatctt aaacatttgc      4920
     atgctggtcc acagctactg ctagcaactg ttagagattc tgtttggcct attaatggca      4980
     ggaaacttgc taggcgcgtt gtcaatcaat gctttacctg tgtgcgtgtt cggggtcaaa      5040
     ccttaaatcc taaaatgggt aatttacctg ctcatcgaat ttcaattgac tatccattta      5100
     aatcagttgg tgttgattat gccggtccat ttttcatcct aaatagaaaa ggacgtggtg      5160
     ctaaattatc aaaatgttat ttgtgtttgt ttatttgttt gcggtttaaa tgcgttcact      5220
     tagaaccagt cagtgacttg accaaagaat cttttataat gacactccgt cgctttgttg      5280
     cacgtcgcgg tctaccagcg gagatttgtt ccgacaatgg acgaaatttc gttgccgctg      5340
     cgaaagaaat tagtcatttc ctaaaaaaca actctcaatc tctctctgag ttcgcgactg      5400
     gggaagggat aaagttttcg tttataccag cttacagtcc tcattttggt ggaatctggg      5460
     aggctggtgt caaggctgct aaataccata ttaaaagagt aatgggaaat actcatctca      5520
     cattcgagga actttgtact ttgttcgcac aagtagaggc agtgttaaat agccgtccct      5580
     tgtgcccaat gtcgtcatcc cctgacgatt tcctttcctt atccccaggg catttcttga      5640
     ttggcagacc actcaatgct ctgccaactc cagcactcga cgactgcaag gctacccacc      5700
     tacaacgtta cgcccgcctt gagcaaataa gacgggattt ctggaaccga tggaggcgag      5760
     aatatatatc cgaacttcaa ctacgcacta aatggaagtc caacaccaca aggctaaaca      5820
     ttggggatct tgttcttctg catgaagaaa acgtgccacc cctaagctgg cgtctcgggc      5880
     gtgtggtaca actgttccct ggaccagacg gcattcckcg tgtggcagac gtccgcactt      5940
     caaggggcca gttgcgacgc tctctcattc gactgtgtcc tctgcctact tcggattgtc      6000
     tatcttctga tttcaaggtt gaagcctaga ccttcaacgg gggaggata                  6049
//
ID   BEL-13_TrNi-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-13_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-234
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1048-1048 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 234 BP; 72 A; 38 C; 32 G; 92 T; 0 other;
     tgtttacgcc taaaactttt ttattagcaa agcgactata aacatgttga ttctcttact        60
     tttttacttt tgataaatgt ttctatctgt gtgggtagat tttttcttct aaaaaatata       120
     cgattccaac taagacagct ctgctgcttg taatttgtta aagtttccta attatacaaa       180
     atacgaagat attcagagtt ttacttaaga agctccaagt cttgtgccta aaca             234
//
ID   BEL-140_AA-I repbase;    DNA;    INV; 7241 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-140_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7241
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 633-633 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           716..6133
FT                 /product="BEL-140_AA-I_1p"
FT                 /translation="MTDDLRSLIKREKRIRNSLDSVASFVRDYQEKRDKDE
FT                 VEVRLQLLESAFNEFHEVHEKIDVVLDEADEDQEEDPEESGRERQERLKRS
FT                 SKKREDESAAVFKDVENCYCKAKAALLKWHKLSSANSGSSVPAAQPIQSRV
FT                 KLPEIRLPTFSGKLQEWVSYRDAFQSLIHQNRELTDMDKFTYLRSSLSGEA
FT                 LQEVCSIELSAANYSVAWDALEERYHNRKLIVKSYLDAIFGIEAMRRESYE
FT                 SLSQLISEFEKNLQMLQKMDQNTEGWSTMLVYMVCSRLDSTTLRFWEASHN
FT                 SKEVPTYRNLITFLKNHCAVLQSVGSSKPPTVEMKRPKMSVSHPSTTGGRC
FT                 CFCSEPFHPAFLCKRFQKMKIAERYDAVRKNGLCMNCLSSGHLARSCSKGF
FT                 CRQCGRKHHTLLHAEANSANKSSVPPTNKKPPSELQPQTQQAQSGTPTHQT
FT                 ASTTNHNEPSTSLSIVQTHSHYTNPQLVTDQSNTLQNTVSLPSHTKTSSPQ
FT                 ILLSTAMVRICNDDGRTMLARALLDSCSQYCFVTSDFCRRMNLKEFPNYLT
FT                 VKGIGGSSNVSNKAVSGLVRPRFASISNFEEEMRFNVLSHMTIPLPCEGFD
FT                 ISQWNLPDHVVLADPDFYQTSDIDIIIGAEYYLDLLQEGRFRLSDEGPTFQ
FT                 NTVFGWIVSGCVTDSGTTVPVTSTTLCSTADLQEQLTRFWELESCRHTSTY
FT                 SVEESTCEEIFRQTTVRDSDGRFVVTLPRKQDIIERLGDSRKSAERRFASL
FT                 ERRFAANPQLKELYLEFMAEYESMGHMERVSEEELAGSLCYYLPHHAVLKP
FT                 DSTTTKLRVVFDASCKTTSGISLNDGMMVGPVVQDDLVSIHARFRLHRIGI
FT                 VADVAKMYRMINMCPRDQKLQLILWRKSPEVPIQIYQLTTVTYGTASAPFL
FT                 ATRCLVQLAKDGESTHPTAAKIVRKDFYVDDMITGVDNPEEGKQLIEEMTS
FT                 LTDSAGFTLRKWNSNCEAVLSDLQPHLRDERTVLEMDSPPPTATVKTLGLV
FT                 WCPNSDDFNFTVPKWSSTSIVTKRIVISDASKLFDPLGLVGPVVVEAKIFI
FT                 QTLWKLQVSWDEPLPENLQTFWLEYRRNLSSLESICIPRWVGYSESCTSFE
FT                 WHGFCDASDSAYGACLYLRSTSHDGIVRVQLMMSKSRVAPLEDLKKKKRKL
FT                 STPRLELSSALLLSHLYEKVNQATQLAIPSFFWTDSNIVKFWIASTPSRWQ
FT                 TFVANRVSEIQHLTRGGVWNHVAGIENPADVLSRGISAAQLEYQSLWFNGP
FT                 VWLHQGRNFWPEDSAVTVEQLDPASLEERKTVALPLQAIPPSEIFSLRSSL
FT                 SSLVRLVAWIRRFRHNAQRTNQNSKKTGFISSQEYDDALLQLVRLSQLECF
FT                 PQEIASLSREDQVKDSSRISALNPKLRDGILRVGGRLQNAAVSENRKHPMI
FT                 IDHRHPLAPMIIQHYHLKMLHSGQQVVIASTRERFWILNIRKLVRKVLHEC
FT                 VTCFRTRPRCQEQLMAELPPERVNPAPPFLKVGVDYCGPFLVSYPHRRSPP
FT                 VKCFVAVFVCLVVKAVHVELVSDLTTEAFLAALKRFTARRGRPALIMCDNA
FT                 KNFVGAKRELRQLLNLFEQQQFQNAVACNAAAEQIEFKFIPARSPNFGGLW
FT                 EAAVKSFKITFKKIIGTRTLLYDEMQTVLTQVEAVLNSRPLTPISNDPGDF
FT                 EALTPGHFLVQRPLTAIAEPDLENIPANRLSVWQKAQDYTQKLWKKWTTLY
FT                 LSDLHNRTKWTRQRDNIAVGTMVLLMDERLPPLKWSLGRVTEVFRGSDDNI
FT                 RVVDVRTSNGVFRRAISKICVLPIRDNATSSNEGA"
XX
SQ   Sequence 7241 BP; 1865 A; 1807 C; 1860 G; 1708 T; 1 other;
     taattggtcc ttcgagccgg atcatacgcg gtgtcgatca gtttcgcgcg aatttgtgaa        60
     ccgacggcgg ttgaaagggc acttttattg ccagaacaat tagtgtggtg cagtgaagaa       120
     taaaatcctc gccattgctc tggggcagtg aaatattcga tggtggatgg tgaatgtttt       180
     tgctgcttgg cgaaaggatc cccaacttgg ttacttgggt cgagacgacg agtagattcc       240
     caagacggaa cggttatctg cggagtgtga cttcgattag ttggacgaaa ggacatcggc       300
     ggattgcagt acacagggaa gtacaaaatt gcatgtgtaa tctgtggcga attgcatgac       360
     gagagccact gtgggttgag tagccattgc gctggccatt gatagaaata aatttaaaat       420
     ttgcatgcga cgttgtgtat ttggctttat ttagtggaat tggtccctgt ggtctggatt       480
     tgctgtctct aatttactcg gattattcgt tagtcgaatt cccctccgct gttgttgtca       540
     tccttgggtg gttcgttcgt ctcgcggcgc gtggaacgtt gagtcgattc gcagtcagca       600
     gtgcagtttt acagtgtggc agtgaatagt gcggtgaaag tggacagtgc aaacgaactc       660
     ctcagtgctg tgaacattaa cttttaacag tgactttagt gtacggtagt gaatcatgac       720
     ggacgattta cgcagtttaa tcaaacgtga gaagcgcata cggaacagtt tggactctgt       780
     ggcttcgttt gtgcgtgact accaagaaaa gcgtgataaa gatgaggtgg aagttcgttt       840
     gcagctgtta gaaagtgcat ttaacgaatt tcatgaagtg cacgagaaga tcgacgtggt       900
     gctggatgaa gccgacgaag accaggaaga agaccccgag gagtcgggaa gagagcgtca       960
     agaacggctg aagcgttcat cgaagaagcg tgaagatgaa agtgcggccg ttttcaagga      1020
     tgtggagaac tgctactgca aggccaaagc tgcgttgttg aagtggcaca aattgagttc      1080
     tgcaaactct ggatcatcgg ttccagctgc acagccgatt caatcgaggg tgaagctacc      1140
     ggagataagg ctcccaacat tcagcggcaa actgcaagaa tgggtctcgt accgtgatgc      1200
     gttccaaagc ctcattcatc agaatcgtga gctcacggat atggacaaat ttacgtacct      1260
     ccgatcgtcg ctgtctggag aagcactcca agaggtttgt tccatcgagc tttccgctgc      1320
     caactactca gtcgcctggg acgcactgga agagcggtat cataaccgaa agttgatagt      1380
     gaaatcgtat ctcgatgcga tcttcggtat tgaagctatg cgacgggaga gttacgaatc      1440
     gctgagccag ctcatcagcg aattcgagaa aaacctgcag atgttgcaga agatggacca      1500
     gaataccgaa ggctggagta cgatgctggt ttacatggta tgttcgaggc tcgatagcac      1560
     cacactgcga ttttgggagg cgtcgcataa ttcgaaggaa gtaccaacct atcgaaactt      1620
     aattaccttc ctgaagaatc actgcgccgt tctccaatcc gttggctcaa gcaaaccccc      1680
     cactgtcgag atgaagagac caaagatgag cgtgagtcat ccgtcgacca caggtggtcg      1740
     ttgctgcttt tgttccgaac cgttccatcc agcgtttctg tgcaaaaggt tccagaagat      1800
     gaagatagcc gagcgatatg atgctgtgag gaagaacgga ttgtgcatga actgtctgtc      1860
     atcgggtcac ttggcgagga gctgcagtaa gggattctgc cgtcaatgtg gaagaaaaca      1920
     ccatactctg cttcatgccg aagcaaacag tgctaataaa tcctccgttc caccgacgaa      1980
     taagaaaccc ccaagtgaac ttcaaccgca aacacaacaa gcacaatcgg gaacaccaac      2040
     acaccagaca gcatccacca caaaccataa cgaaccttcc acttcattat caattgtcca      2100
     aacacattcg cattacacca acccacagct cgtcacagat caatcgaaca cattgcaaaa      2160
     cactgtatcc ctcccatcgc acacgaaaac ttcttcgcca caaattctcc tatcaactgc      2220
     catggtgcgg atatgtaatg atgacgggcg tacgatgctg gccagagcgc ttttagattc      2280
     atgctcgcag tattgcttcg tcacatccga tttttgtcgt cgaatgaacc tcaaggagtt      2340
     cccgaattat ctcacggtca agggaatcgg aggatcatca aatgtctcca acaaggcagt      2400
     tagcggcttg gtcaggccgc gcttcgcgag catctctaac ttcgaggaag aaatgcggtt      2460
     caacgtccta tcgcatatga cgattccact cccatgtgaa ggtttcgaca tcagccagtg      2520
     gaatctgcca gatcacgtcg tgctagcgga tccagatttc taccaaacgt cggacatcga      2580
     tatcatcatc ggtgctgaat actacctcga cctgctgcaa gagggaagat tccgactaag      2640
     cgacgaaggg cctaccttcc agaatacggt gtttgggtgg attgtgtcag gctgcgttac      2700
     tgattctgga acaaccgtac cagtgacttc cacaacgttg tgttctacag cagatctcca      2760
     agagcagctc acgcgatttt gggagcttga aagctgccgc catacgagca cgtactcagt      2820
     ggaagaatcc acatgtgaag aaatcttccg gcaaactact gtccgggaca gtgacggccg      2880
     tttcgtggtg acgttgccaa ggaagcaaga catcattgag cgattgggag attccagaaa      2940
     gagcgcagaa aggaggtttg cgagcctgga aaggcgattc gctgcaaatc cgcagctgaa      3000
     ggaactgtat ttggagttca tggcggaata cgagtcgatg ggtcacatgg agagagtaag      3060
     cgaagaggag ttggctggat cgttgtgtta ttacttgccg catcacgccg tattgaaacc      3120
     ggacagtact actacaaagc tgcgcgtagt gtttgacgct tcgtgcaaaa ccacgtccgg      3180
     catttcgctc aacgacggaa tgatggtcgg gcctgtagtt caagacgacc tcgtttcgat      3240
     tcacgctcga tttcgcttgc accggatcgg cattgtggcc gatgtagcaa aaatgtatcg      3300
     gatgatcaac atgtgccctc gagaccagaa gttgcagctg attttgtgga ggaagtcccc      3360
     ggaagtgccg atccagatct accagttgac gaccgttaca tacggtaccg cgtcggctcc      3420
     gtttctcgca acgcgctgct tggtgcagct ggccaaggac ggagaatcaa ctcatccgac      3480
     cgcagcaaag attgtacgga aggatttcta cgtcgacgat atgattactg gagtcgacaa      3540
     ccccgaagaa ggcaagcaac tgattgaaga gatgaccagt ctgaccgatt cggctggatt      3600
     cactttacgt aagtggaact ccaactgcga agcagtactc agcgatctgc aaccgcatct      3660
     gcgtgatgag cgaacggttc tcgaaatgga ttcgccacca ccaactgcca ccgtgaagac      3720
     attgggcctc gtctggtgtc cgaattccga tgacttcaac ttcaccgttc ccaagtggag      3780
     tagtacgtcg atcgtcacga agcgtatcgt aatttccgat gcgtccaagc tattcgaccc      3840
     gttgggtttg gtgggtcctg tagtcgtcga agccaagatt ttcattcaga ccttgtggaa      3900
     actgcaagtg agctgggacg agcctcttcc agaaaatctt caaacgtttt ggttggagta      3960
     ccggaggaat ctcagttcgc tggaatccat ctgcattcca cgatgggtcg gttattccga      4020
     gagttgcact tcgttcgaat ggcatggatt ttgcgacgct tcggacagtg cttacggtgc      4080
     atgcttgtat ctccgaagta cctcccacga cggcatcgtc cgtgtccagc taatgatgtc      4140
     aaaatcgaga gttgcgccgc tggaagactt gaagaagaag aaacgcaagc tgtccactcc      4200
     tcgtctcgaa ctgtcgtccg ctctactgct cagtcacctg tacgagaagg tcaatcaggc      4260
     cactcagttg gcaattccgt cgtttttctg gaccgattcc aacatcgtaa agttttggat      4320
     tgcgtccaca ccgtcacgat ggcagacttt cgtcgcgaat agggtgtccg agatccagca      4380
     cctaacaagg ggtggcgtct ggaatcatgt tgcaggaatc gagaacccgg ccgacgttct      4440
     ttctcggggt atatcagctg cccagcttga ataccaatcc ctctggttta acggaccagt      4500
     ttggctgcat caaggtcgga acttctggcc tgaggattct gcagttaccg tggagcaact      4560
     tgacccagca tcgttagaag aacgtaaaac ggtagccttg ccgctacaag caattcctcc      4620
     tagcgaaatc ttttcgctac gctcgtcact gtcgtcactt gttcgtcttg tagcttggat      4680
     tcgccgattc cgccataacg cccagagaac caaccagaac tccaagaaga ctgggtttat      4740
     cagttcgcaa gagtacgacg acgcactgct acagttggtg cggctgtctc aactggaatg      4800
     cttcccgcag gagatagcaa gcttgtcccg ggaggatcag gtgaaagatt cttccagaat      4860
     atcggcatta aatcccaagc tcagagatgg aatactccgc gttggcggcc ggctgcagaa      4920
     cgcagcagtt tcggaaaacc ggaagcatcc aatgatcatc gaccaccgtc atcccctcgc      4980
     tccgatgata atccagcact accatctgaa gatgcttcat tccgggcagc aagtggtcat      5040
     cgctagcacc agagaacgat tctggatttt gaacatccgg aagcttgtgc gaaaggtcct      5100
     tcacgaatgt gtcacctgtt tccgaacgag accaagatgc caggaacagc taatggcaga      5160
     gctgccgccg gaaagagtaa atccggcacc gccattcctc aaggttggag tggattattg      5220
     tggaccattc ctggtctcct atcctcatcg tcgcagccct ccagtgaaat gctttgtagc      5280
     tgtatttgtg tgtctagtgg tcaaagccgt ccatgtcgag ctagtcagcg atcttaccac      5340
     tgaggcattc ctggcagccc tgaagcgctt caccgcccgt cgaggtcgcc cagcgttgat      5400
     aatgtgcgac aacgccaaga atttcgtcgg agccaaacgg gaacttcgac aattgttgaa      5460
     cctattcgag caacagcagt tccagaacgc cgtcgcctgc aacgccgcag ctgagcagat      5520
     tgagtttaaa ttcatccctg ccagatcgcc aaactttggt ggcctttggg aagcagcagt      5580
     gaagagcttc aagatcacct tcaagaagat tattggaacg cgaactttgc tgtacgacga      5640
     aatgcagacg gtactcacgc aggttgaggc ggtgttgaat tccagaccgc tcactccaat      5700
     cagcaacgat ccaggagact ttgaagcgct cacacctggg cactttttag ttcaacgacc      5760
     attaaccgct atcgccgaac ctgatttgga aaacatcccg gccaatcgtc tctccgtctg      5820
     gcagaaggcg caagattaca cgcagaagct gtggaagaag tggactacac tgtacctttc      5880
     cgacttgcac aaccggacga agtggacaag gcaacgtgac aacatcgccg ttggaacaat      5940
     ggttttgttg atggacgagc ggcttccgcc gttgaaatgg agcctcggcc gtgttactga      6000
     ggtttttcgt ggatcggacg ataacatccg agtggtagac gtgcgcacca gcaatggggt      6060
     ctttcgaaga gcaatttcga agatttgcgt gctcccgatc agggacaacg caacgtcgtc      6120
     aaacgaaggg gcataactcg cctccaccgg tggtgcttcg gcatccgcgg aggtccacgt      6180
     ggcctccgca ttccagtaag tttttgtatt tttcaatcat tcaaaaaagt aaccgaagtm      6240
     tcatacccca tagccgctgt tctacccggt cccgggtctc cgggacactc cgccgtccga      6300
     agtcaaccat cgttcgtcca agatctcgtt tctaagtccc acgtttcgag gtatatgcat      6360
     gttggtgaag gtagctgtga tcgtcatcaa gtcctgtgaa gtccgtccaa gcataggagc      6420
     tccccaagca gaggagtttt cgttttgttt ctgggtccat cgactcaacc taccaccgta      6480
     cgctaatccc gtttcgtctc gtcgaggtac cacctgacaa tcctcccatg gtccagcaat      6540
     tcatagcgtc agtcggagtt tggccaactc aaggattggc actgtggcaa ccggatcgtg      6600
     aacaccatag aagcggtaag agctcaccgc aaccgtcagg atattctcgg cattcgatgt      6660
     gatacgtaca gcatccgttt tatcatccgt tgggtcatcg tcatcgccgc tggtagcggc      6720
     tgcggaggcc tcatgggcct ccgttccagg caagtcattg taaagttctt aaatccagtt      6780
     gaaaaagcac cctctcattt gtagcaacgt gtgatgcccc taccccaccg tcgtcgggga      6840
     cgaccgcagg acacccttga agagtacgcg ccgtcgatcg atgtccatcg tccgtgtaag      6900
     gaaggaatcg agcgaaatcc gaacatcaat ccgtcaacaa caaccatccc gtcaacgtca      6960
     tcaaccaagt cgctgattca gcagaaatcc gaagaagttc tccgagcaac caccaagatt      7020
     ccgtgccagc aaccagaagg aagatcgctc acaaaccgtg tagcgattcg tcaagaacct      7080
     ccaaaccaac gcactacaaa caatcgagag cagcaagagt cagaagaaga gaagaacagt      7140
     gaattcgatt aggaataatg aattagaacc gtaatttaat caaattagtt agtttgcaac      7200
     gagtagattt tgaaatccgt aggtttcaag gcggccggct a                          7241
//
ID   BEL-140_AA-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   supercont1.258;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-140_AA_;
KW   BEL-140_AA-I; BEL-140_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.258; Positions  965353  965704.
XX
SQ   Sequence 352 BP; 95 A; 87 C; 71 G; 99 T; 0 other;
     tgtgtacgcc aataattaat gcatttatgt tgcgagtgcc accctagcgc gtggtcactc        60
     attctctgtt gtgatccacc actattgcaa acagcagata taggcattga taccgatcgc       120
     ttcccgatcg ttatcgctct aaccacctct acggggtaga gatagcagaa actgaaatac       180
     cccaacagtt agaaatatat ccccgccgcg atcggtactc tacgccgtaa taaattacgt       240
     tgtgtatttt tcccgacgaa ataaagtgta gttttgtgca ttcgataaaa cccgtgtttt       300
     cgaaagtgat tatatcaccg cggaccttcc ggacgttcta tgtgcgcaaa ca               352
//
ID   BEL-141_AA-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   supercont1.294;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-141_AA_;
KW   BEL-141_AA-I; BEL-141_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-376
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.294; Positions  536314  536689.
XX
SQ   Sequence 376 BP; 100 A; 79 C; 92 G; 105 T; 0 other;
     tggtcaagca ggacagaaag ggttaaaagt gagtgaccaa acacgttcca cactatccgt        60
     accattggtt atcttgctcc atcgcattag aactcttggc ccgtttcgct tcacgagacg       120
     agtaggtatg agcgtgtgat agtgtgcgaa gggtatttgt cccaatcgct ctcgatcggt       180
     ggccagccag ctgtgggatt tttatgtata atcagagcag tcagaagtaa atataccgtc       240
     gcggagacaa caagttgttg tccgtttaat ttacaataat aaaagtgtac tttctgttcg       300
     cgcaatagag tgtacttttt cagtgaaaac cgccgcgagt ttttaatgtg tccgaaaccc       360
     tgttgacgcg cgaaca                                                       376
//
ID   BEL-142_AA-I repbase;    DNA;    INV; 5215 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.02, Created)
DT   13-DEC-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-142_;
KW   BEL-142_AA-I; BEL-142_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5215
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5215
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 5215 BP; 1517 A; 1215 C; 1244 G; 1239 T; 0 other;
     tttttatggt ccttcgagcc ggatccaacg tcgaagttgc ttgaaagaag tgattcggta        60
     caaacatacc aactgtgaac aaaccttcgg cgggaagaat accacaaaaa acgccatttg       120
     tgacgctgaa gagcccactt gatgggacaa aagagtgaag tgatcttacg ttacaatggt       180
     gaccaaatgg cgccgtgaag aaagccgttt tgggaaagaa gaaggcaaaa aaagggttta       240
     acacatacat gcaacacggt gaacataaac ggtgtgtcga acggtgatat tttttataag       300
     aagaaggata tattaattaa acaaaaaaag tgagtggaag ctaatttggc aagtcctaaa       360
     acagtgaaaa gggaagttca taaaggattc cgaagaaaat tcgactgaca tcggctgcag       420
     caaaggtggt ggagctgctg gtggacaagc gccagcgaga atagggtgaa tacgaggcat       480
     caacttattt gcggagaaac aggtgggtga aatcgtgctc catttttgat taatccccct       540
     acaagtacaa ccagtccttc cgttgcactt ctcgttgtgg tatactcaat tgttcacctt       600
     gataccaaat cattcccgac ccaaaaggtc cttgaaattc ccgaatatga gtgatcaaga       660
     acaagcaatt gcgaagctcc agcaacgcat ggccggtctg ctggaatccg tgggtcttct       720
     ggattcaggt tcgcaatgcc attttatctc ctacaatctt gtacagaagt tgtgccttcc       780
     tcgaaaaaga actccatacc cgattcaagt atctggaatt ggccaagcgt cagcgaaggt       840
     aacccatttt gttatagccg aaatctcctc cctccactct gatttcagag ttaaaataag       900
     aatgttcgtt ctgccaagtg tcaccgcaaa acttccgagc cacgacattg attcttctgg       960
     atggccaatg cctgagcatg tatgtctagc ggatccaaca ttctgcaaat caaacaccgt      1020
     ggatttaatc attggagcag aatatttctt ccaaatactg cagtacggac ggatcaaact      1080
     cgggaacgat cgtccacttc tccaaaatac gcagcttggg tgggtcgtgt ccggaggatg      1140
     tagtgaagcc atcaacagtc acgcagtgtg taatctgcag cagacgagtt cacttgaaga      1200
     gttggtgcat cggttttggc agcttgagac gtgccatgat ctacgtggtt ggtcagcaga      1260
     agaacgtgct tgcgagcaat ttttcattgc caacacagtg cggaattcca acggtcgtta      1320
     cgtagtgaag cttccctgcc ggaaggaatt gatcgatcag ttgaaggaca atcggtacaa      1380
     cgcagagcgc cgattctatt cactggaaca caagctggaa ttgaacccag agttgaaggc      1440
     acagtaccac gaatttattc gcgagtatga atcactcgga cacatgcgag aagtaacaga      1500
     agccgaatta tccgtcaagc cacaatactt tctgcctcat cacgccgtcc tgaagccgga      1560
     gagcaccacg acgaagttga gaactgtatt cgatgcttca tgtaaatcga aatccggcct      1620
     ctcattgaac gacgtcctcc ttgctgggcc aacagttcaa gatacactcg ttgccatagt      1680
     tttccgattc cggatgcacg ctttcgtcgc cgttgcagac atttcgaaaa tgtaccggca      1740
     aattctcgtc gatgatggag atcagccgtt acaacgaatc ctgtttcgct tctctaccga      1800
     agagccaatt aaggtgtacc agttgttgac ggttacgtat gggacaaatt gtgcaccatt      1860
     tttagcaact cgtgtgttac aaaagcttgc ggatgatgaa gaaaagcgtt ttccagaagc      1920
     cgctccaatc gtccgtaaat ctttctacgt agatgatatg cttacaggca gtagcagtgt      1980
     gcaaaggcta agaagaatta ttgaacaagt caacggtatg gttgaatcag ccggcttttc      2040
     acttcgaaaa tgggcttcta actgtcatga agctttggtt gacataccag tggaatatca      2100
     cgagaaatcg accacgctcg atctggacaa cgacagttca gtaacaacgc ttggattacg      2160
     atgggatacg ctgaaagatg aacttcgatt caaacaacca aagtggacac attcggacaa      2220
     cattactaag cggctagtgc tttctcggct agccagtctg ttcgatccac tcggactaat      2280
     aggtccagcc atcgtgaaag cgaagatatt catgcaagcg ctgtggaagc atcaagtaga      2340
     ctgggacact ccactcccat ctgcattaca gttggagtgg cacgaatatc aactgcaaat      2400
     tatcaacatt aaccaggtta gtgtacctcg atacgtcctt ccattgcaaa aggttgtact      2460
     gtgcgaactt cacggtttca gcgatgcttc cgaatcagcg tacggcgcat gcttgtatat      2520
     tcgaagcata acagcggatg gtttttgtac agtacgacta atctcagcta aatctcgagt      2580
     cgccccgata gataacaaat ccattccacg tttggaacta tgcgcagctc ttctgcttgc      2640
     tcatctgttg gagaagttcc ttgaaagcgt tgaaatcagg gctaccgtgt atttatggag      2700
     tgattcaacc attgtcttga gttggttgtc tgccaatccg tcatcgtgga agacatttgt      2760
     ggctaaccgt gtcgccgaaa ttcaggaact aacacctcaa gccatttgga atcatgtacc      2820
     tagtgaagat aatcccgctg acattatctc ccgtggtttg gatctcgaaa cattatccaa      2880
     atcgtctctc tggtggaacg gtccaagctg gttagccact gtggatgaag aatggccgaa      2940
     gaagtccaac gttccgaagt cagtcgatga tccggagtat gaagcaagga aaactgttgc      3000
     acttcctagt atatcaaaag aaactgatga agacgtagtg tccagatttt cgacgctaag      3060
     gcgtctactt aatttcgctg ccaggggact acgattcgcc ttgaattgcc ggtctgctcc      3120
     aaatctgcgc cgaactggct caataaccat cgaagaaaag aatgaagcct tgatgaagtt      3180
     ggtgaaacgc gtccaagaag aatccttcca acgagagttt gctgcacttc ggcaaaataa      3240
     accaattcct cgttcatcaa agctccgttt cctgaagccg agggtggttg atggtcttat      3300
     ccgtgtcggc ggacgattgc atcatgcaga gattgccatc gatgcaaaac atcctcttgt      3360
     tctgccaggc aagcatcacc tcacttactt aattgccttg gcggagcatc ataaaacatt      3420
     acatggagga ccgcagctgc ttctatcaac aattcgtcaa cgattctggc cgcttggtgg      3480
     tcgtgatatg gtgcgtcgac ttgtccactc gtgcgtcact tgtacaagag cgaatcctca      3540
     agttttgcat caactaatgg gagacctgcc gcatgatcga ataaccggca acttcgtgtt      3600
     cggaaatgtt ggaattgatt tcgccggccc gatgtatctg aaatcaggag cacgtttcac      3660
     tcagccggtg aaagggtata ttgccatctt cgtttgttta gctacaaagg ctgcacacct      3720
     tgaactggta atgagtttga ccacatccgc attcctggca gctttgaaaa ggttcatttc      3780
     acgtcgtgga agacctgcga acatctattg cgacaacgct aagaattttc gaggagcaag      3840
     cacacagctg gaaagcctac gcaagctgtt catctcacag aatcacaaga aggaaatcaa      3900
     tagcttttgt gaaccgaaca gcattcattt tcacttcatc ccaccaagat caccatcgtt      3960
     tgggggcttg tgggaagcgt gcgttaagtc tacaaaattt catttacgcc gcatcgttgg      4020
     aaaagctcag ttgaataagg aacagttcga gacagtcctc gccgaggttg aagcgtgtct      4080
     caattcccgg ccaataacac cattgtccac ggacccatcg gatctacaag cgctcacgcc      4140
     gggtcatttc atcattggcc gaccgttaaa tgctatgccc gaacctgacc tgacagcagc      4200
     tccaccaaac cgcctcaccg cctggcaaca tgtacagcag atagcgcagc atttctggaa      4260
     gcgttggtac agcgaatacc tgacttccct tcagcaaaca tatcgatggt ccgaagcaac      4320
     ccgaaatctg gccgtcggat cgatcattgt tttgaaggaa gaaaaccagc caccattgtc      4380
     gtggccgctg gcacgagtta tcgacgtgca ccctggagca gatggattgg tacgtgtggc      4440
     gacagttcga acagcgacag gaacgttcaa gcgagcagtc tctaagattt gcttgctacc      4500
     agtggaagta gacccaaata cagttgaaac tccagcaacc gcgtcgcgca tcatggcggc      4560
     cggctcgtca acaggcgacg ggcaaacaac atcatcttcg tcaaggcaga aattggcagc      4620
     gacaaaacga actcagcttg aacatcaagc gagaaccaat caaccaattg tccaactggt      4680
     tgacattcgt caacagcagc agtagcagaa ggtggttcca gcgacaaggc gatgtcacgt      4740
     ccacccgggg ctgaggcctc gggtcacagc taagtatctc gtttccaatt tcacaatcgt      4800
     caatttagct aggtctaata gagttggaat tgcagatcac caaaacggac gttggcaacg      4860
     ctggaatcaa ccgaatacga acgaagaagc acccatttat caaccacgaa gtgacataca      4920
     gcgtttgaga caagaagaga tacgaaaaac aatcagaagc atagagaaga gacacggtag      4980
     gcgagtttag aatcagcggc ggaaaattga atcgacccag tgagagcagc aacgaggcag      5040
     aacccaatga agcagagatg tgacaagcaa cgaagaagag acaacgaata gcgtagcgta      5100
     gatgcaaggg agaaacagca aaggaagagg caaagtgcat aggcagtgaa aagcaattaa      5160
     gtaacagcat taacggatta gcagtaggag aggttaaaaa ttcaggcggc cggta           5215
//
ID   BEL-142_AA-LTR repbase;    DNA;    INV; 553 BP.
XX
AC   supercont1.305;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-142_AA_;
KW   BEL-142_AA-I; BEL-142_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-553
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.305; Positions 1021894 1021342.
XX
SQ   Sequence 553 BP; 224 A; 75 C; 119 G; 135 T; 0 other;
     tgtttagcac gtaagcaaaa taaaaggaat acatttctta gattgaattt tgaatcaccc        60
     taaccgtccc aaaatcaagc gcccagttcc aaatgaaacg gtatggggcg caacatacga       120
     agagacagat gtaaacaaaa tgtaaaagag atcaataaaa gttatgagcg tagagagaat       180
     caataggtac atgtatagga agatacaaca caggttagca cagctggttt tgggtgaaag       240
     tgaaagtttg ttgacaagtt agttaagaat gcgaaacagc tcagagcagc tcgttgcaat       300
     accggtcgcg caagttaaat aaaattacca tcgtagatcc aaaagttaaa cgtgtagtgt       360
     taacaaattt attttaaaca acattatgaa taataaaaga aagtttagaa taaaaggaaa       420
     gtgttaaagg tgttataaaa ataaagaagg aaggtagagg aaagtgtgac cagtgaaaac       480
     aaaagaataa gtgaattgta ttaccggttc cgacgttgga cccggaattt ataactgatg       540
     aatttcatgt aca                                                          553
//
ID   BEL-143_AA-I repbase;    DNA;    INV; 6840 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.01, Created)
DT   15-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-143_;
KW   BEL-143_AA-I; BEL-143_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6840
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6840
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 236-236 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(792..4367,4371..6806)
FT                 /product="BEL-143_AA-I_1p"
FT                 /translation="MVQCDKCDGWCHFSCVGVSEDIADKSWSCTNCVTATW
FT                 VQRTKAAFENGTKRDDGNLDRKSTRSQPIGSIATSTRANLVIPSEVYQTDS
FT                 PDRNPVNSAHKPSTKAVKGQAKTDQRKQQWNTDNRPADLSVVDAARALSEV
FT                 SISSSQKSAVSRTKLRLMRLQEERDFQQQQEERRKIAEEKAAEEHRKYLDE
FT                 KYMLLEEALSEKGSRRSERGSQSRSDASSRVSEWVQRASQVQIEPEVNVVC
FT                 RNNLQLPINSTGPTYDNGRFGLQRIRFEPSAQTGLGNVEIVQRFNQPFHSA
FT                 AATIATTGQSSQTRLPNHFRQGVLPTNPVSNPFASSTRPPFNSTTFDGQVL
FT                 PPPACSTGVHQPNLQSGIHASQGTFQEESQDEFQISRSQVAARQAVPRDLP
FT                 TFSGNPEEWPIFLSMFNRTTTMCGFTEEENLVRLQKSLKGKAYEAVKSRLM
FT                 FPGNVPGILSTLRMLFGQPEVIVQSLIGKVSSLPAIREDKLDSLVDFAVHV
FT                 QNFCAAVDACGLQEYMYNVTLLHQLVSKLPPSLKLNWAQYRLTMPTANLAI
FT                 FSGWIYALAEAASVVTFPSSVPPEQSRNVARSSKKGNVYLNAHSETPSSED
FT                 SIDTSPKEPSSSKLLPNKQVCPICKGSCKSADKCKRFVDLSRESRWAAIRE
FT                 FALCRTCLRMHKGNCNAKPCGKNGCTYRHHELLHNDSKDNTQSTEAAVSTG
FT                 NENKSTASPCSNSSGCNIHRSAASSVLFRYLPVVLYGKTTVVRTYAFLDEG
FT                 SELSLLDQEIANALELDGSERPLCLRWTGGTERCEPNSQVYNLQIAGAKEG
FT                 SKRFDLNDVRTVKDLKLPRQSLDMVKFGKEYPYLRDLPIDSYREIRPRILI
FT                 GTKHAHLGLVLKSREGEFGQPIAVKSRLGWTICGGQGTDRGASLHHYSFHI
FT                 CPCNTEADENLHQAMKNYFALDSLGVTKSDKSMLSMEDQRAMMLLQTLTHH
FT                 QDNRYESGLLWRYDDARLPDSRSMALRRFQCLKKRMEKEPELQATLQAKIE
FT                 EYLAKGYIRLLSEEEINEKVPRRWYLPVFPVTNPNKPGKVRIVWDAAASAH
FT                 GTSLNSALLKGPDLLCSLLTILLQFRERRIGLTGDIREMFHQVLIRAEDQL
FT                 FQCFYCINQNGGTQVYAMQVMTFGACCSPTTAQFVKNTNADRFANDYPAAH
FT                 QAITKSHYVDDMLVSLYTEEQAIQLAKDVRHVHKGGFEIRNWISNSRMVLA
FT                 ALQGADTDEKCLDLFSELATEKVLGMWWNTIEDVFTYKVGWNRYDPALLGG
FT                 TRRPTKREVLRVLMTIFDPLGLISHFLSYLKILLQQIWRSGIQWDEEVDDD
FT                 AYNKRLTWLKVLPRVEQVKIPRCYNSKYLISESDEVQLHTMVDASENGMAA
FT                 VCYLRLIRDGSVSCSIVAAKSRVAPLKFTSIPRLELEAAVVGARLSHSVQE
FT                 SLSFKIFRKLYWTDSRDVLCWINSDHRRYSQYVGHRISEILEISEAQEWRW
FT                 VPGKQNPADDATKWSSLPELSSQDRWFNGADFLWRSEADWPTTLSRQDSTD
FT                 NELRPSLLAHHVSPEPVLCVNNFSTWERLLKVVAYVQRFINNCRHKHQATK
FT                 TETGPFSAKQLLTAEICLVRLCQRESYPDEMIVLQNTLQRPDTTMTIPKSS
FT                 ALYQLTPWLDGNGIMRMRTRIAACHYATDDAKNPIILPQKHHTTRLIVAHY
FT                 HRKYHHHNHETVINEIRQKFHIPRLRVCYQQVRRNCQQCKNRHAAPNPPFM
FT                 ADLPPARLAAYSQPFTHVGIDYFGPIEVTVGRRVEKRWVLLATCLTTRAIH
FT                 LEVTHSLNTSSCIMALRNFMARRGTPKKIYSDRGTNFVGANRELMEINEAM
FT                 NEREFMKEFGKAGIDWIFNPPLTPHMGGSWERLIRTVKNNLAVVCLSARPS
FT                 DEVFRNLLTEIENTVNSRPLLHVPIDDDSAPALTPNHFLLGSSNGSKPLTD
FT                 IDDSGAALRQNWLTSQILANQFWKRWVTDYLPEITRRRKIIATKSGANRQV
FT                 RSATVRTSSGVYERPATKLAVLDVRCDGE"
XX
SQ   Sequence 6840 BP; 1912 A; 1739 C; 1653 G; 1536 T; 0 other;
     gttaaatatc cctaaaaaac cattcaaccc ggtaagctaa gcgtagattg aaataactgg        60
     gaatgtgcac tgaatgattc aattaataca atttaggttg caccttcagt tatcgctatc       120
     ctgttacccg tagcaccaac aatagattat cgccgtattg aagtcgaatc cgaccgtgaa       180
     tcctgatcac tcccatatcc accgggttta ggcctagaga agcatatcgc agttgagaaa       240
     caaaagaaat actaaacgta agtgaatact agtttgtttt tataatgcac actcatatct       300
     atagacagct atataaaccg agccacaatt cgtcacttat gttgactggg gttcccataa       360
     ccattttgaa gtagcactta gtagatcatg aaattgctca tttaaatgga acttccttaa       420
     tatgataagc aaatttacgc attccaagta attaatttaa gctgaattcg tcttatagga       480
     aaattatatc cttctcacaa ccacggatca tctgtctttt attcattccg aggcgaagga       540
     taataatttc ggaaacgtcg ttggaccgaa ggccaacaaa atataatttt cgtttatttt       600
     cacgaattga gcgtgatgcc tagtcgcggt tgtatcagat caggtgcgaa aggtgacaaa       660
     ggcgcgtgca aaatgttagg tgaaggtgcg gtcggtggtc aaagttgcgg tgaggtacca       720
     gatgtgttgg ttgtggatga accttggaag gatatacgtg taagacgtgc agaggagcgg       780
     actccaagga gatggtgcag tgtgataagt gcgacggatg gtgtcatttc tcctgcgtgg       840
     gtgtttctga agacattgcc gacaagagct ggagttgtac taactgcgtt actgcgacat       900
     gggtccagcg aactaaggca gctttcgaaa acggaaccaa gcgggatgat ggcaacctag       960
     atcgcaaatc aactagaagc cagccaatcg ggagcatcgc tacgagtacg cgcgccaacc      1020
     tggtgattcc ttcagaagtt tatcaaactg actccccgga tcgaaatccc gtcaacagtg      1080
     cacacaaacc ttcaacaaaa gcggtgaaag gccaagcgaa gacagatcag cggaaacagc      1140
     agtggaacac ggataatcga cccgcagatc tttctgttgt cgatgccgca agagcattat      1200
     cagaagtttc aatttcttcg tcgcagaaat cagcagtgag ccgcactaag ttacggctga      1260
     tgcgactaca ggaggaaagg gatttccagc agcagcaaga agagcgtcga aaaatcgccg      1320
     aagagaaagc agcggaagag catcggaaat atctggatga gaaatacatg ttgcttgaag      1380
     aggcgttgag cgagaaagga tcacgaagga gcgaaagagg atcgcagagc cgcagtgatg      1440
     cgtcaagccg agtgagcgaa tgggttcaga gagccagtca ggtgcagatc gaaccagaag      1500
     tgaatgttgt ttgcaggaat aatctacaac tccccataaa cagcacgggg cctacctacg      1560
     ataatggtcg gttcggactg caacgaattc gtttcgaacc cagtgcccaa actggtctcg      1620
     gcaatgtaga aattgttcaa cgattcaatc aaccgtttca ctcagcagca gcaacgatcg      1680
     caactacagg acagtcatcg cagaccagat tgcccaacca cttccgtcaa ggagtgctac      1740
     caacgaatcc cgtcagcaat ccattcgcat cgtcaactag gcctccattc aattccacta      1800
     cctttgatgg acaggtccta ccccctccgg cttgttctac cggagttcac caaccaaatc      1860
     ttcaaagtgg cattcacgca tcccaaggaa catttcaaga ggagtctcag gatgaattcc      1920
     agatttcccg gtcgcaggtg gctgccagac aagcagttcc gagggatcta ccaacgttct      1980
     ccggaaatcc ggaagaatgg cctatatttc tgtcgatgtt caatcgtacg actaccatgt      2040
     gtgggttcac cgaggaagag aacctagttc ggctgcagaa aagtctaaaa ggcaaggcct      2100
     atgaagcagt taagagtcgt ctgatgttcc ccggaaacgt cccaggcatt ttgtctaccc      2160
     tgagaatgtt gtttgggcaa ccagaagtca tcgtacagtc gctgatagga aaagtcagct      2220
     ctctaccagc cattagggaa gacaaactgg attctctggt tgattttgct gtacacgttc      2280
     aaaacttctg tgccgccgta gacgcgtgtg gattgcagga gtacatgtac aacgttacgt      2340
     tgctccatca gctggtcagc aagttgccac catcgctcaa actcaattgg gcgcaatatc      2400
     gtctaacgat gcctaccgcc aacttggcga tcttcagtgg ctggatatac gccttggcag      2460
     aagctgcaag tgtcgtcacc tttccgtcgt cggtgccacc tgaacaatct cggaatgtag      2520
     ctcgtagctc caagaaagga aatgtgtacc tcaatgccca ttcagagaca ccgtcgtctg      2580
     aggatagcat agatacttcg ccaaaggaac cctcgtcctc aaaactcttg ccgaataaac      2640
     aggtctgccc aatttgtaaa ggcagttgca agtccgccga caaatgtaag cgcttcgtag      2700
     acctctccag agaatcgcgg tgggctgcaa taagagagtt cgccctgtgc cgtacctgtc      2760
     tgcggatgca caagggaaac tgcaacgcca agccctgtgg taaaaatgga tgtacctatc      2820
     gacatcatga gttgctacac aatgattcga aggacaatac tcagagcaca gaagcagcag      2880
     tgtcaaccgg aaacgagaat aagtcaactg cttcaccctg ctccaattca tccggatgca      2940
     acatacatag gtcagctgcc agttcagtac tattccgcta cctccctgtc gttttgtacg      3000
     gtaagacgac cgtagttcgc acgtacgcct tcttggacga gggctccgag ctctcgcttc      3060
     ttgatcaaga gattgctaat gcattagagc tggacggttc cgaacgacct ctatgcctga      3120
     gatggaccgg aggaactgaa cgttgtgaac cgaattctca agtttacaat ctccaaatcg      3180
     ctggagccaa ggaaggaagc aagcgcttcg atcttaatga tgtgcgaacg gtaaaggacc      3240
     taaaactacc gcgacaatcg ttggacatgg tcaaatttgg caaagaatac ccatatctcc      3300
     gggatttgcc gatcgattcc taccgggaaa tacggccacg tatactgatc ggaaccaaac      3360
     acgcccatct tggcctcgtc ctgaaaagtc gagaaggaga gtttgggcag ccaatcgcag      3420
     tcaagtcaag gctgggatgg accatctgtg gaggacaagg cactgatcgc ggagcaagtc      3480
     tacaccatta cagcttccac atatgtccgt gtaataccga agcagacgag aatcttcacc      3540
     aggcgatgaa gaactacttc gccctggaca gcctcggagt tactaaatcg gacaaatcaa      3600
     tgttatccat ggaagatcaa cgagccatga tgttactcca gacacttact caccaccaag      3660
     ataatcggta tgaatctggc ttactgtggc gatatgatga cgctcgtcta ccggatagtc      3720
     gatccatggc gctgcgacga ttccaatgtc tgaaaaagcg gatggaaaag gaaccggagc      3780
     tgcaggcgac tttgcaagcc aaaatcgagg agtacctagc aaaaggctac atcagattgc      3840
     tcagtgagga agaaatcaat gagaaagtgc ctcgccggtg gtatcttccg gtttttcccg      3900
     ttaccaatcc aaacaaacct ggaaaggtac gtatagtgtg ggacgcagcg gccagtgccc      3960
     atggtacttc gctgaattcg gctcttctca aaggaccaga tttactgtgc tccctcctca      4020
     ccattctact ccagttccga gaacgtcgta tcggactcac cggtgacatc cgtgaaatgt      4080
     ttcaccaggt gttgattcgt gcagaagacc agctcttcca atgtttctac tgcataaacc      4140
     aaaatggagg aacccaagtg tacgctatgc aggtgatgac cttcggagca tgctgctcac      4200
     cgaccactgc gcagttcgtg aagaacacaa atgctgatcg attcgcaaac gattacccag      4260
     cggcgcatca agccataact aagtcacact acgtggacga tatgcttgtc agtctgtaca      4320
     ctgaagagca agccatccag ctggccaagg acgtcaggca cgtccactag aaaggcggct      4380
     tcgagattcg gaactggatc agcaactcga gaatggttct ggcagcgcta caaggagcag      4440
     atactgacga gaaatgcctt gatctgttct ccgaactggc cacggaaaag gttctaggca      4500
     tgtggtggaa tacgatcgaa gacgtcttca cctacaaagt gggatggaat cgttacgatc      4560
     cagctttgtt gggaggtaca cgtaggccaa ccaagcggga agttcttcgc gtcctgatga      4620
     ccatcttcga tccgttaggg ctaatctccc acttcttatc ttatctaaaa attctgctgc      4680
     agcaaatctg gcgatccggt atacagtggg atgaagaagt cgatgacgac gcctacaata      4740
     aacggcttac ctggctgaag gtgcttccac gcgtcgaaca agtgaagatt ccacgatgtt      4800
     acaactccaa gtacctcata agcgaatccg acgaagtgca gctgcacaca atggtagatg      4860
     caagcgaaaa cggcatggcc gccgtttgtt atcttcgttt gatccgcgac ggatctgttt      4920
     cttgttccat tgtcgcagcc aaaagccgag ttgccccgct caagttcact tcgataccac      4980
     gactagaact tgaggccgcc gtagtgggcg cccggttatc tcactccgtt caagagtctc      5040
     tgtccttcaa gatctttcgg aaactgtact ggactgattc cagagatgtt ctctgctgga      5100
     tcaattcgga ccaccggcgc tacagtcaat acgtcggcca tagaatcagc gaaattcttg      5160
     aaatatccga ggcgcaggaa tggcgatggg tcccgggcaa gcaaaatcca gccgacgacg      5220
     ctaccaagtg gagcagctta ccagaattgt catctcagga caggtggttc aacggtgcag      5280
     acttcctttg gcgctctgaa gcagactggc cgacaacgct cagccgtcaa gattcgaccg      5340
     acaatgaact acgtccgtcg cttctagcgc atcatgtttc tccggaacca gtgctttgcg      5400
     tcaacaactt ctcgacttgg gagcgattgc tcaaggttgt cgcatacgtc caacggttca      5460
     tcaataactg ccgtcacaag caccaagcaa caaagacgga aactggtccc ttttcggcaa      5520
     aacaacttct cacggccgaa atctgcctgg ttcgactctg tcaacgggaa tcgtatcccg      5580
     atgaaatgat agtgcttcaa aatacactcc agcgtcccga caccacgatg actataccaa      5640
     aatccagcgc cctataccag ctcacaccgt ggctagacgg taatggaatt atgcgcatgc      5700
     gaacccgtat tgctgcatgt cactacgcca ctgatgacgc caagaaccca atcattctcc      5760
     cgcagaaaca tcacaccacc cgtctgatcg ttgcacacta ccaccgcaaa tatcatcacc      5820
     acaatcacga aacggttatc aatgaaatcc gacagaaatt tcacattccc cgcttgcgag      5880
     tttgttacca gcaagtgcgt agaaactgcc agcagtgcaa aaaccggcac gcagctccaa      5940
     atccaccatt catggccgac cttccacctg cccgccttgc agcctactca cagccgttca      6000
     cgcacgttgg aatcgattac tttggtccga tcgaagtcac cgtcggcagg agagtagaga      6060
     agcgatgggt gctccttgct acatgcctca caactcgcgc aatccactta gaggtcacac      6120
     actctcttaa cacgagctcc tgcattatgg ctctccgaaa cttcatggct cgtcgtggta      6180
     cacccaagaa gatctacagt gaccgtggca caaactttgt aggggcaaat agagagctga      6240
     tggagattaa cgaagccatg aacgaacgcg aatttatgaa ggagttcggg aaggccggca      6300
     tagactggat cttcaatcca cctctcacac cgcacatggg tggtagctgg gagaggttga      6360
     tccgaacagt gaaaaacaac ctagcagtag tgtgtttatc agcaaggcca tcggacgaag      6420
     tgttccggaa tctgctgact gagatcgaga acaccgtgaa ttcgcggccc ttattacatg      6480
     tcccgataga cgacgattcg gcaccagcgc tgacaccgaa ccactttctg ctcggctcgt      6540
     ccaatggctc gaagccgtta accgacatcg acgacagcgg cgcagctctt aggcagaact      6600
     ggcttacgtc ccaaatcctg gcaaatcagt tttggaaacg ctgggttacg gactaccttc      6660
     cagaaatcac ccgcagaaga aagatcatcg cgaccaaatc gggtgcaaac agacaggtcc      6720
     ggtccgctac agtgcggaca tccagtggag tctatgagcg cccagcgact aagttagcag      6780
     ttctggatgt aaggtgcgac ggtgagtaag ccaacttaca gttggcgtac ccggcgggac      6840
//
ID   BEL-143_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   15-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-143_AA_;
KW   BEL-143_AA-I; BEL-143_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-243
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequenced updated to consensus.
XX
SQ   Sequence 243 BP; 81 A; 43 C; 54 G; 65 T; 0 other;
     tgttattcga cacgaattgc gcacttttca tcactacctt gatacgccgc tgctatcggt        60
     gagttgtact aactgatctc acaatcgacc agccggtgag tatgtagatg gtgatgagaa       120
     taaacaatcc caaagcagac cagaattaag agaggaagaa gggataaatg agagagtaga       180
     agtctgtgaa cgatactttg gttaagccaa caatttgata gcattattta tccatttaga       240
     ata                                                                     243
//
ID   BEL-144_AA-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   AAGE02017327;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-144_AA_;
KW   BEL-144_AA-I; BEL-144_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-276
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017327; Positions   31218   31493.
XX
SQ   Sequence 276 BP; 90 A; 69 C; 41 G; 76 T; 0 other;
     tgttaagaat aagcaaaaat tatgaaccac cctaatgtaa aacagtatct attgtctctc        60
     ttatcaccta tccatctgat agcgtgagcg aaaccatacc aataggatct ctctcgtgtc       120
     ctccatctgg tcctgagcgt attgtataac tagtatagaa tagccagtcc agtcagtcga       180
     ataaaaaccg tcaaacgaag aacagtgttt ctcatcgcta accaaaccct aattctcata       240
     tccgataccg agccaatcta gttcacattt cgtaca                                 276
//
ID   BEL-145_AA-I repbase;    DNA;    INV; 6798 BP.
XX
AC   AAGE02022721;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-145_AA_;
KW   BEL-145_AA-LTR; BEL-145_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6798
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022721; Positions    8924   15721.
XX
CC   Positions [5771-6349] - Integrase core
CC   'GTAGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1415..6703
FT                 /product="BEL-145_AA-I_1p"
FT                 /translation="MPPKTIASTKKELSLRVLQTRLNSSLAMFDEILKFSQ
FT                 SMNEDTTAIQVSIRVDKLEELWETVNEAIIEVESHEDYADDDEDCSKVRAK
FT                 FIERYFTVKTSLLEKAKEVEEVASNQSRILDSSQSQSTLDHVRLPQIKLQS
FT                 FSGNIDEWLSFRDLYTSLIHWKTDLPDVEKFHYLKGCLTGEAKALIDPLAI
FT                 TKANYLVAWDTLTKRYNDSKLLKRRQVQALFKLPMLTRESASELQSLLEGF
FT                 ERIIQNLDQLVQPQDYKDLLLLDIIGSRLDPVTRRGWEEYSASREQDSIKD
FT                 LTEFLQKRIRVLGSLPSRNADLKGDSAAITKKKFFGPRTSHSAVQASGGRC
FT                 VACSESHPLYQCSSFQRLTVSARDKLLRNHSLCRNCFRRGHQASDCSSRFV
FT                 CRNCKAKHHTMVCFHSDKGDGAKSNSSSNSTQADSSNVTLERNAHPTTSTT
FT                 TDSVSSNTAFQRSLSVLLATAVVLVEDETGNSFPARALLDSGSECNFMTEN
FT                 LCQRLKIQRRRSDISVLGIGQANTRVKHKVTATIKSRVSEFSRNMEFLILP
FT                 RVTADLPTTSIQTACWEIPGGVELADPAFFNSKAVDMVLGIQYFFAFFKTG
FT                 KEIELGKGLPLLTESVFGWVVSGLVNADRPGSTISCNMAVTDNLEEILSRF
FT                 WACEEIEFPNNNSPVEAKCEEHYSCTVQRGVDGRYTVSLPKDDTVRAQLGS
FT                 SRDIALRRLQGIERRLLREPILRDQYEKFMEEYLELGHMRRVDVPTSANRC
FT                 YLPHHPVVKESSTTTKVRVVFDASCKTSSGVSLNDVLLVGPVIQDDLRAII
FT                 LRARTKQILIVADVEKMFRQIWIDQKDLVLQNILWRKDFNERAETYELCTV
FT                 TYGTKPAPYLATRTLQQLAVDEQQRFPMAARAILEDVYMDDVLTGEDDTEA
FT                 AKQLQVQLEEMMESGGFHLRKWASNSASVLEGIANENLAVAKEDGVQLDPD
FT                 PAVKTLGLYWFPETDVFKFQFKIAKIGPVENLSKRKLLSMIATLFDPLGLI
FT                 GAVIVTAKIFMQRLWCWVDEDGKKLDWDRPVDANECEKWIELHQQIPILNE
FT                 ISIPRCIVLPGATNVQIHFFSDASKAAYGVCAYVRSTDNCGRSYVALLTSK
FT                 SKVSPLKTQTIPRLELCGALLAAQLKEKVFNALKIDARAFFWVDSTCVLQW
FT                 LKAIPATWNTFVANRVAKIQRSTENCEWNHVQGVENPADLISRGLLPQEML
FT                 ENQLWWEGPPWLKREREFWPNQSTGGAPDEATEEVVEEVRRSRAHCVTTET
FT                 ETFGRNYVKKFSTFTDMICRTAYILRFIKMLEKSKENCKFPSFLTTEERAK
FT                 AELAIIRCIQREEFDGEWAALSKNDAVARSSPLRWFNPILSKDNVIRVGGR
FT                 LGHSQETENTKHPIVIPASHPLTRLLFQHYHQKLLHAGPQLLLATMRQRYW
FT                 PLGGRNIARKVVHDCIRCFRTKPNTVEQFMGELPPSRVTVARPFSRTGVDY
FT                 FGPVYFRPGPRRTAVKAYVALFVCMCTKAVHLELVTDLSTDRFLQAFRRFI
FT                 ARRGRCTDVYSDNGTNFVGARNQLEQLFELLRSNDHRQKMVTECAKECITW
FT                 HFNPPSAPHFGGLWEAAVRSAKGHLLKVLGELVVPFEDLCTLLVQVESCMN
FT                 SRPLTPMSDDPSDLEPLTPGHFLIGAPLEQLPDHDYTDFPVNRLHMCQLIQ
FT                 QKLQIFWKRWRMEYLTQLQGRMKRWKPAIPISVGKLVVIKEDNTPPLRWKM
FT                 ARIQEVHPGADGVVRVVTLKTASGLLKRAVEKICLLPPSSQPV"
XX
SQ   Sequence 6798 BP; 1923 A; 1480 C; 1609 G; 1786 T; 0 other;
     tttggtcctt cgaaccggat gactgaagga aggtcgtcca aaaatcaccg gtttgcctat        60
     cgatccaccc aaggataacc gccattggag gcacagttgg gatcgcctat tcacgccatc       120
     acaaagccag tcgtcttttg gctcaatatt cgcccgatca accgccatct cgatcatctt       180
     cgcatcttcg aacaatcgcc atcgttgaag acaccaaggc tgcgggcagt aacacactgt       240
     aatacgtaaa aaagcacttt agaacttctt gctggattcg gtaccgatta atggtcccat       300
     aggtgggtac acattagtat tatgtccagc cgaagctagg atcaacaact attgctaaca       360
     ctacatgcat tccatctatg aacacttcgc cattcatcac tgcaccattc aacatttcca       420
     ccaacactcg agggagcact agaatccgat atccattgga gatcttcgaa ggcaacgttt       480
     aaccactggg tagtaaaccc tggttcatcc aggtaaatat tcacggatat atgtccagcc       540
     gtctctagga tcttcggata atcttcacca ccaattattt cgatttcata ctgctccaat       600
     tcgacgagta aaccaaaaca aactacggaa tacgttcatc acgattagca gtattacacc       660
     taccactact atcgatgtga gaaagatcgc catctcgtta cgtcatcatc tgcccaattg       720
     atcatcgatg tgaatcgatc cctttcgtca tcactatctc cattgagcat tacccggacg       780
     cgaatccact gcatcattgc atcactggtc atcagttgca gaatttagtt gcacaggtta       840
     gttagaacaa acacttttcg cactaattag tatatggcca gccgatgctg ggaatctacg       900
     gaaactacat gtggcacttt tgacttttct ttgaacactg atacgtggtg atgtatgcgt       960
     gggatgatcg atatcaatat ttgattttgt ggaacgtgtt ttcgaggggc cgatcggagc      1020
     attctctgca cgttctacgt attgaggagg aacagtagtg attaccgtga ctagccggca      1080
     ctctgttttt tggaacacca gtaccacgaa tttgtctctc aggtcagttt aagacagtat      1140
     atgccctgcc gaggcttcgg actccgatgt atactacatg aatgtttttt cttcatgcaa      1200
     tcccatggta ctggaaacct attgaacgag attttcccaa tataaatttg aatcaaccgt      1260
     caattggaag ttgtgcatac ctgtagagag gaggagttca tcttttgtga aggtcagtaa      1320
     gctctacagt gtatgtcttg ccgaagcaag taggaaatac ggaatattac aactactttt      1380
     ctttcaactt tcctgggacg aatcttgccg tacgatgccg ccgaagacaa tcgcctcaac      1440
     gaagaaggag ctgtcactcc gagtgttaca aactcgactc aactcatcat tggcaatgtt      1500
     tgatgagatt ctaaaatttt ctcaatcgat gaatgaggat accacagcca ttcaggtgtc      1560
     aattagggtt gataagttgg aagagttatg ggaaactgtt aatgaggcta ttattgaggt      1620
     agaatcgcat gaagattacg cagatgatga tgaagattgt tctaaggtta gggcaaaatt      1680
     tatagagcga tattttacgg tgaaaacgtc attgttggag aaggccaagg aagtggaaga      1740
     agtcgcttcg aatcaatccc gtattttgga ttcatcacaa tcgcagtcca cgctggatca      1800
     tgtccgcctc ccacaaatca aacttcaaag tttcagtggt aacattgacg agtggttgag      1860
     ttttcgggat ctatacacat cgttgatcca ctggaaaacc gacctccccg atgtcgagaa      1920
     gtttcattat cttaagggat gtctcaccgg cgaagcaaag gcgttgatag atccacttgc      1980
     tattactaaa gcaaactatc tagtagcgtg ggacacatta acgaaacgtt acaatgatag      2040
     taagctcttg aaacgtcgcc aagtccaagc ccttttcaag ttgccaatgc tgacaaggga      2100
     gtcagcgtcg gagcttcagt ccttactgga aggatttgaa aggatcattc aaaacctgga      2160
     tcaacttgtg cagcctcaag attacaagga tctgctgtta cttgacatca tagggtcgcg      2220
     ccttgatcca gtcacacgac gaggatggga agagtattca gcttcaaggg aacaggattc      2280
     gattaaggac ctcacggaat ttcttcaaaa gcggattcga gtattgggct cgctaccatc      2340
     caggaatgct gatcttaagg gagattcagc agctattacc aagaagaagt tctttggtcc      2400
     acgaacaagt catagcgcag tacaagcatc tggtggacga tgcgtggctt gttcagaatc      2460
     ccatccgcta taccaatgtt catccttcca acgtctaacg gtgtccgctc gagataagct      2520
     tcttcgtaat cattcgttat gccgcaactg tttccgacga ggacatcagg cttctgactg      2580
     ttcttctcgt ttcgtttgcc gaaattgtaa agcgaagcac cataccatgg tttgtttcca      2640
     ctcggacaag ggcgatggcg ccaagagtaa ctcttcatca aattctacgc aagctgattc      2700
     gagtaatgtg acattggaac gaaatgcgca cccaactact tctacaacta cagattcggt      2760
     ctcctcaaat actgcctttc aacgttcttt gtcagtactg ttagctacgg cggtagtttt      2820
     ggtagaagac gaaacaggta acagtttccc tgctcgggct ttgctagatt ctgggtccga      2880
     atgcaatttt atgacagaga atttgtgtca acggttaaaa atccaacgaa ggcgttcgga      2940
     tatatctgtc ctggggatag gacaagcaaa tacgcgagtc aaacataagg ttacggcaac      3000
     catcaaatca agggtgtcag aattttctcg gaatatggag ttcctcattt tgccaagggt      3060
     tacagcagat ctacccacca caagtatcca aacggcttgc tgggagattc ccggaggcgt      3120
     ggaattagcg gatccagcat ttttcaattc caaggcggtg gatatggttc taggaatcca      3180
     gtatttcttt gcgtttttca agaccggcaa ggaaattgag ttagggaaag gactcccatt      3240
     gttgacagag tcggtattcg gctgggtggt atccggtttg gtgaatgctg atcgtcctgg      3300
     gtcaacaatt tcctgtaaca tggcggttac agataacctg gaagaaatat tatctcgctt      3360
     ttgggcctgc gaagaaatcg agtttcccaa caacaactca ccggtagaag caaagtgcga      3420
     ggagcactat agctgcacgg ttcaacgcgg tgttgatggc cggtatacag tctctcttcc      3480
     gaaggatgat acggttcggg cgcagttggg ttcatcaagg gatattgccc ttcggcgtct      3540
     ccaaggaata gaacgaagat tacttcgaga accaatatta cgagatcagt acgagaaatt      3600
     tatggaggaa tatttggagc tagggcatat gcgcagggtg gatgtgccca catcggcgaa      3660
     caggtgctat ttacctcacc atcccgttgt aaaggagagt agtacaacaa ccaaagtcag      3720
     ggtagtattc gacgcttcgt gtaagacgag ttcgggagta tcgcttaacg atgtgttact      3780
     ggttgggcca gtgatccaag atgatttacg cgccataatt ctgcgggctc gaaccaaaca      3840
     gatcctcatc gtggcagatg tggaaaaaat gtttcgccaa atttggatag accagaagga      3900
     tctggttttg caaaacatct tgtggaggaa ggatttcaac gaacgcgccg aaacgtacga      3960
     actttgcacg gttacgtacg gtacgaaacc cgctccgtat ttagcgactc gaacattaca      4020
     gcagctggcg gtagatgagc aacaacgatt tcctatggca gcaagagcaa tcctggaaga      4080
     cgtatatatg gatgatgttc tgacaggtga ggatgatacc gaagcggcaa aacaattaca      4140
     agttcaactt gaagaaatga tggaaagcgg aggatttcat ttgaggaaat gggcctcgaa      4200
     ttcagcatca gttctggaag gaatcgcaaa cgaaaatctt gcggtagcga aagaggatgg      4260
     tgttcagttg gatccagatc cggctgtgaa gaccttaggg ttatactggt ttcccgaaac      4320
     ggacgtgttc aaattccaat tcaagattgc aaagatcggc ccggtcgaaa atttgtcaaa      4380
     acggaaactt ttgtcgatga tagccactct gtttgaccct cttggcttga taggcgcagt      4440
     cattgtcact gctaaaatct ttatgcagcg tttgtggtgt tgggtcgatg aagatggaaa      4500
     gaagctggat tgggatcgac ctgttgacgc caatgaatgt gagaagtgga tagagctaca      4560
     tcaacaaatt ccaattctta acgaaatcag cataccacgg tgtattgtac ttccaggagc      4620
     aacaaatgtt caaattcatt tcttctctga cgcatccaag gctgcgtatg gagtttgtgc      4680
     ttatgttcgt agcacagata actgcggaag aagctacgtc gcattattaa cttcgaaatc      4740
     caaggtttcc ccattgaaaa cgcaaacaat tccgcggctg gagctttgtg gagcgttgtt      4800
     agcagcacaa ctgaaagaga aggtatttaa cgcgctaaaa atagatgcaa gggcattctt      4860
     ttgggtagat tccacctgcg ttcttcaatg gttgaaggca atcccggcta cttggaacac      4920
     ctttgtagct aatcgtgtgg caaaaattca gcgttcaacg gaaaattgtg aatggaacca      4980
     tgttcaaggc gttgaaaacc cagcagacct tatttcgagg ggattgttac cgcaagaaat      5040
     gttggaaaac caactttggt gggaaggtcc accgtggctc aagcgggaaa gagaattctg      5100
     gccgaatcaa tctacaggag gtgcaccaga tgaagcaacc gaagaagtag ttgaagaagt      5160
     tcgtagatct cgtgcacatt gtgttacaac tgaaacagaa acatttggaa gaaattatgt      5220
     gaagaaattt tccactttca ccgatatgat ttgccgaaca gcgtacatac ttcgtttcat      5280
     aaaaatgttg gaaaaatcga aggagaactg caaatttccc agttttctaa caacagaaga      5340
     gcgtgccaag gcggaattgg cgattatacg ctgtattcaa cgtgaggagt tcgacggaga      5400
     atgggcggcc ctgagcaaaa atgatgctgt agcaagaagc tcaccacttc gttggttcaa      5460
     tccaatactt tcgaaggata acgtgattcg agttggtggc agattaggac attcccagga      5520
     aaccgaaaac actaaacatc ctattgtgat acctgcatct catccactga caagactact      5580
     tttccaacat tatcaccaaa aacttctgca tgccggaccg cagcttctac tagcaaccat      5640
     gagacagcgg tattggcctt taggtggaag aaatatagca cgaaaggtcg tgcatgactg      5700
     catacggtgt tttaggacta aaccaaatac agtcgagcag tttatgggag agctaccacc      5760
     ttctcgagta acagtagccc gaccattttc caggacagga gtggattatt ttggccctgt      5820
     atacttccga ccaggcccac gtcgtacagc tgtgaaggcg tacgtggcct tatttgtttg      5880
     tatgtgtacg aaggcagttc atttggaact tgtgaccgac ctatcgacag atcgctttct      5940
     gcaagcattc aggagattta tagccaggcg aggacgttgc acggatgtgt attccgataa      6000
     cgggaccaat tttgtaggtg cccgaaatca actggaacag ctattcgaac ttcttcgtag      6060
     caacgatcat cgtcaaaaaa tggtaacgga gtgtgccaaa gaatgtatta cttggcattt      6120
     taaccctcct agtgcaccac atttcggtgg gctctgggag gctgcagtgc gttctgcaaa      6180
     gggacacctt ttgaaggttt taggtgagct cgtcgttcca tttgaggatc tctgcactct      6240
     cctagtccaa gtagagtcct gtatgaattc cagaccgcta acacctatgt cagacgaccc      6300
     atctgatctg gaaccactca ctcctgggca tttccttatc ggtgctccac tagagcaatt      6360
     accggaccac gactataccg attttccggt gaatagattg cacatgtgcc agttgatcca      6420
     gcaaaaactg cagatattct ggaagcgctg gagaatggag taccttactc aactgcaagg      6480
     tcggatgaaa cgttggaagc ctgcaatacc gatttcagtg ggaaaactgg tagtgattaa      6540
     ggaagacaat acgccaccac ttcggtggaa gatggcaaga attcaggaag tacatccggg      6600
     ggcagacggt gtagttagag ttgttaccct gaagaccgct tcaggattgt tgaaacgcgc      6660
     ggtagagaaa atttgccttc ttcccccatc gtctcaacct gtttaagcca tgaatcgatc      6720
     aaaacccacc accaatttag tgttcgaaga ggtcattctt tattttcaga aattccggaa      6780
     tttcaggttg ggggagta                                                    6798
//
ID   BEL-145_AA-LTR repbase;    DNA;    INV; 515 BP.
XX
AC   AAGE02022721;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-145_AA_;
KW   BEL-145_AA-I; BEL-145_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-515
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022721; Positions    8409    8923.
XX
SQ   Sequence 515 BP; 180 A; 89 C; 113 G; 133 T; 0 other;
     tgtacagttg taataatcac cagaaatctg atcggatgac cccttgatca tcgctgtgga        60
     acctattttt tgaccacagt atatcagatc atgggaaccc aatactatgt tcgatctcta       120
     atacagtggc caatgtgtac gaaacgtgta ggaagagaag aaaaaatgca cttttgaaga       180
     ggtcaaggga cggagaaata gaatttaagt tagtcataag atgccaatcg cttagagccg       240
     ttcggtcatg ggaccaaatt gtaactagaa ttagtgtaat aaatgttgaa tgttagtgta       300
     aagtaaattg aatgtttaac gtgtaataaa gtgttatgta attgtaaata aagtgtgtat       360
     ggaataaagt gtatagtgtc ttcaataaaa actttggaac cttgactcac ccgagcaagc       420
     aagacagccc aatacttggc ctaatcccga ggaaggagcc tcccgaatcg cctgaaatcc       480
     acccaaggta aaggaaccag taacaaggtg caaca                                  515
//
ID   BEL-146_AA-LTR repbase;    DNA;    INV; 883 BP.
XX
AC   AAGE02027562;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-146_AA_;
KW   BEL-146_AA-I; BEL-146_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-883
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027562; Positions     284    1166.
XX
SQ   Sequence 883 BP; 350 A; 144 C; 150 G; 239 T; 0 other;
     tgtcgcaaca ttcattgcgt cgcacctaca catccaatcg ccgttctcca gacttctgtt        60
     gaagtgaatt gtctctatag cgaagcggcg ctgcgcgtca accttaaagt cagaatgaca       120
     gttagggaag atgtcagaaa gaaaggagcg taaaagaaga cagatttgga agtcagacag       180
     ataacaagca ggcaaagtgt ggtctagtga gtgttggaaa tttaatacgt tccaaattta       240
     ttagtctact taaaattaaa acaaattagt aatgaattag taaaagttaa tttgtttaat       300
     atgaagaaag gtgttaaata gagcaaaaat tacaaaatta gtacggatgt tagtataggt       360
     tagttcatgc aaatacagta attagtgcgt gctcttaaaa ctaatggaat cttaattgaa       420
     actagatcta cagctactat tagaaacgag tcagaaacgt aaacaaagtt aacacacaga       480
     caaagaaaca taaaaacagg taaaatattg aaatattgtg aaattaactt aacctaacct       540
     aaaattacac cttatagcat tcctatcacc gatctaagaa ctaaacgttg gaacacgtag       600
     aaacgggaca ctaaacgtaa gtcaatcttt ctttttaaaa atgccccaga ttataccaac       660
     aaatactatt gacaataatc acatgaaatc aagagaaaca aaatgtacaa aatgacacct       720
     aaattcctaa aactactatg tacaacacaa attacataaa aattatgatt gtctctcgtt       780
     aatagggatt ttttaacgtt gtcgatcgcg ttgaatcgca acttgaataa aacgtttaag       840
     aaatcggaaa actgtctgtc aagtttcgtt gaaaattgca aca                         883
//
ID   BEL-147_AA-LTR repbase;    DNA;    INV; 531 BP.
XX
AC   AAGE02019780;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-147_AA_;
KW   BEL-147_AA-I; BEL-147_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-531
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019780; Positions    1602    1072.
XX
SQ   Sequence 531 BP; 184 A; 100 C; 97 G; 150 T; 0 other;
     tgtgccgaca agacccctcg tttcgacaac cttaacaatc acagcgctac gttgatcgat        60
     gacagcgtag atgatgagtg atatcgggag agaaatgaca ggcgattagt ggatagaaga       120
     agaaaaaacc cttcgtcatc ttgtgcctgt gactaggaga ttatcatcca agtgaattat       180
     agtgaactag aatctttatt aatagtaaaa cactatttcg agaaaattag cgtgaattat       240
     atctaatgat agactgtaag taacactata tacctttgct gcaaatcgaa aaattatgtt       300
     taatgaacga tatgtctaaa tcaggattgt tcggttgata ctgtatctac cacataattc       360
     aaacacgacc cattcttgaa attgatagcg gtaaccaaat ttgtaagtaa attcacctta       420
     tttagaaaac ctaacatgca gaaacctaat aaaatgaatt cattgtagct tgaagctaaa       480
     cccacctaat cctgtgtttg ctgtcgagag ttggtgcacc ctaaccccac a                531
//
ID   BEL-148_AA-I repbase;    DNA;    INV; 6022 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-148_AA-LTR;
KW   BEL-148_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6022
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6022
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2151-2151 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..6019
FT                 /product="BEL-148_AA-I_1p"
FT                 /translation="MDSNIDPKNNHNCGKCNRSDSANNMVGCDLCDNWAHF
FT                 DCAGVSDSIADPERSWKCEVCLAQLHAQQLSRKSKSTSSSNRSGNSQRQRL
FT                 QLQLLEEERKLRLKHQEEEDAARKKAAEEEELVRKKRMEEEQRYLKEKFEL
FT                 LMAETDGSMDGSSSTSRKSDPNSRTSSQKVRDWLSRERNANQLSGGAPPNP
FT                 TTSGVQGSIVPESADKSAPRKVVAVDFPPELTKPTTAASKGGAHNVGAGQV
FT                 PPSSSTPQFSREHVSPSEALGQRTSISRIPMDISEFVPARNRAANPMTYGE
FT                 QEINAHSTSANFRDAVDPQRLAYEQQNTNFPAQSYYNTGHPSKQRGFVLDT
FT                 VDNTTVGPTPTQIAARQVMSRDLPMFSGDPEDWPMFFSAFQNSTVACGYSD
FT                 AENLARLQRCLDGTAMAAVKSRLLLPASVPYIISTLQRLFGRPEILIHSLL
FT                 NKLRDVPAPKAENLRSVIEFGLAVQDLVDHMQLARLNEHLCNPMLLHELVE
FT                 KLPAIYKMQWSAYKRASQIVNLATFGNFMSDLVNTASDVTLPDLSVSSSKS
FT                 TRPTSQRHKSKLFVHTEEAPQDEPEMHQTLEDNKKRCSYCSSIDHEIHRCM
FT                 RFKDLNVDTRWKVMRKNGLCRICLIPHRRWPCRSGKECGVNGCRLRHHALL
FT                 HILDDDIPRDHIEAGPSVSRNNQIVHHNVHHVLPTVLFRYLPVLIEGSNGK
FT                 SVHTFAFLDDGSSSTLMEEGIANKLGVDGPSDPLWLSWTSNVSREEKGSKR
FT                 VSVMISGREMGNRFQLNDVRTVQSLRLPQQTLQYDVLKDAYPHLRGLPVQS
FT                 YSKAVPGIIIGMEHARLLTTLKVREGSCDDLVAAKTRLGWCVYGKQSCCDV
FT                 SVGHLNHHSILSNRELHEQMKGFFAIEEAAITVKLESDDDRRAKQIMESTT
FT                 QRIGRAFETGLLWKHEEVCFPDSYKMAEKRLIQLEKRLSKNPELREKVDAQ
FT                 IAEYEQKGYAHRLTDEEKQSSDYKRVWYLPLNVVQNPKKPEKIRLIWDAAA
FT                 RSGGVSFNDMLLKGPDLLTSLVAVLVRFRQRNIAICGDIREMFHQIAIRDL
FT                 DKQAQRFLWRRSSDCSPECFVMDVATFGATCSPSSAQFIKNKNAEEFAEQY
FT                 PAAANAIIKSHYVDDYLDSVDTVEEAVQLWNDVRYVHAQGGFEMRNLISNS
FT                 SEVMQHVGETGNTTVKSMNLDETQDNERVLGMVWKPKLDVFTFDTTLRPGI
FT                 VELLTRHAAPTKRQVLSTVMSFFDPLGLIAHFVIQGKVLMQDIWRSGTEWD
FT                 EPIADSLHDKWIKWSQHMKEMAAVRVPRCFFSGADHIAMKGMQIHVFVDAS
FT                 PEAYACVAYLRIVDNGVPRCALLAAKSKVAPLKPVSIPRLELQAALIGSRL
FT                 ADTFCGYLSIPVKQRFFWLDSTTVLAWLRSDSRRYHPFVAFRVGEILSLTA
FT                 VNEWRHLPSKFNVADDATKWGSGPSFNPECRWYSGPSFLSKPEEYWPVLVD
FT                 HIVPVTEELRIVHLQHHKVSQPLIDAARFSKWQKILRTAAYVLRAIKKFKR
FT                 QQISAWISSEEYRNAENLLWRQVQMQSYPEEYETLYHNREHPDQPKQLNKS
FT                 SCLVPQSPYLDGEGVIRMDSRIKAAPNTTFNMTHPIILAKNHRITYLLVDS
FT                 FHSKFLHGNSETVLNEVRQRFSIPKLRGLVKRVSRDCQRCRIHKTTPQPPK
FT                 MAPLPTERLSSFIRPFTNTGVDYFGPITVKQGRNNVKRWVVLFTCLSVRAV
FT                 HLEIAHSLTSQSCVMAIRRFVARRGAPETIWSDNGTNFVGANNILKEQLLK
FT                 INESCAATFTNARTSWRFNPPYAPHMGGAWERLVRSVKTAMITINEHIHRP
FT                 SDEVLETVILEAEAIVNSRPLTYVPLDSSSDEALTPNHFLLYGTQGVNQPP
FT                 IPLKDTHAPLRDSWNMAKNIVDEFWRRWIREYLPELTRRTKWYQPVKPLEV
FT                 GDLVIIIDEAKRNGWTRGKILDVKTGKDGQVRKATVLTSNGVQTRAAVNLA
FT                 LLDVGQTSEYKSGDLGATREG"
XX
SQ   Sequence 6022 BP; 1757 A; 1393 C; 1483 G; 1389 T; 0 other;
     aactttaaag gtttactcca tcacgcacgg aatggattcc aacatcgatc cgaaaaacaa        60
     ccacaattgc ggtaaatgta atcgatccga ctctgccaac aacatggtcg ggtgtgattt       120
     atgcgataat tgggctcact tcgactgtgc cggagtgtcc gattctattg cggatccgga       180
     aagaagctgg aaatgcgaag tctgcctggc ccaacttcac gcccagcagt tatcgcgtaa       240
     atccaaatca acaagttcgt caaaccgaag cggaaactct caacgtcaac gtttgcaact       300
     tcagctgcta gaagaagaac ggaagctgcg tctgaagcac caagaagaag aagatgctgc       360
     aaggaagaaa gctgctgaag aagaagagct ggtgcgtaaa aagcgaatgg aagaggaaca       420
     acgatactta aaggaaaagt tcgagctctt gatggcagaa acggatggta gcatggacgg       480
     ttcgagcagt acaagtcgga agagcgatcc taacagtagg actagtagtc agaaggtaag       540
     agattggctg agccgggaac ggaacgcaaa tcagctttcc ggaggtgccc ctcctaatcc       600
     gaccacatct ggtgtccaag gatcgatcgt tcctgagtct gctgataaga gtgcaccacg       660
     gaaggtagtc gcagtagact ttccacccga attgaccaaa cccactacag cagcttcgaa       720
     aggcggagcc cataacgttg gggcagggca agtgccgccg agttcttcca cccctcagtt       780
     ttctcgagag catgtcagtc catcagaagc tctggggcaa cgtacatcga tttcgcgtat       840
     tccaatggat atatcggagt ttgttccggc aagaaacaga gcagccaatc cgatgactta       900
     cggagaacag gagattaatg cccactctac cagtgccaac tttagagacg cagtagatcc       960
     tcagaggttg gcatatgaac aacaaaatac gaattttcca gctcaatcgt actataacac      1020
     tggacatccg tccaagcaac gaggattcgt actggatacg gttgacaaca caacggtcgg      1080
     tccaacacca acgcagatcg cagcacgcca agtaatgtcg agagacctcc cgatgttttc      1140
     cggagatcct gaggactggc caatgttctt cagtgcattc cagaattcaa cagtggcatg      1200
     tggatactcc gatgcggaaa atttggcaag gctgcaacgt tgcctcgacg gcacggctat      1260
     ggcggcggtc aaaagtcgcc ttctgctacc agcctcagtc ccttacatta tcagcacatt      1320
     acaaaggcta ttcgggaggc cagaaatatt gattcattct ctcctaaaca agctacgaga      1380
     tgtccctgca cctaaggcag aaaatctccg atccgtgatt gaattcggat tagctgttca      1440
     agatcttgtg gatcacatgc aactcgctag gctaaacgaa cacctttgta atccgatgtt      1500
     gctgcacgaa ctagttgaaa aactaccagc gatctataag atgcaatggt cggcttacaa      1560
     gcgagcgagt cagattgtga atctggcaac tttcggcaac ttcatgtcgg acttggtgaa      1620
     cactgcatcc gacgtaacat taccagacct ttcggtctca tcatcaaagt cgacaaggcc      1680
     aacgagtcag cgccataagt cgaaactgtt cgtacacact gaagaagcgc cacaggatga      1740
     accagagatg caccaaacac tagaagacaa caagaaaaga tgttcgtact gctccagcat      1800
     agatcacgaa attcatcgtt gtatgcggtt caaggatttg aacgttgaca cacgatggaa      1860
     ggtaatgcga aagaacggtt tgtgcagaat ctgtttaata ccgcatcgaa ggtggccttg      1920
     ccgatctggg aaagaatgtg gcgtcaacgg atgtcgctta cgtcatcacg ctcttctaca      1980
     cattttggat gacgatatcc ctagagatca cattgaagca ggtcctagcg tctcgagaaa      2040
     taaccaaata gttcaccata acgtgcatca cgttctgccg actgttctat ttcgttatct      2100
     accagtcttg atagagggtt cgaatgggaa gtcagtccat acgtttgcat ttttggatga      2160
     tggttcgtcc tcgaccctta tggaggaggg aatagctaac aaactcggag tagatggccc      2220
     atctgatccg ctttggctca gctggacaag caatgttagt cgagaggaga aaggctcgaa      2280
     acgtgtatca gtaatgattt ctggacgtga gatggggaat cgcttccagc tgaacgatgt      2340
     ccgaactgtt caaagtcttc gtctcccaca gcagacgtta caatacgatg ttctgaaaga      2400
     cgcatatcct catcttcgag gattgccagt acagagctac tcaaaggcgg tccctgggat      2460
     catcatcgga atggaacacg cacggctgct gactaccctg aaagttagag agggcagttg      2520
     tgatgatcta gtagcagcga aaacgagatt aggctggtgt gtatatggca aacagtcctg      2580
     ttgcgatgta tctgtaggac atctgaatca tcattccatt ctctcaaatc gggaactcca      2640
     cgagcaaatg aaagggttct ttgcaatcga agaagcagct ataacagtga agctggaatc      2700
     agatgacgat agacgagcga agcaaattat ggagagtact acacaaagaa taggtagagc      2760
     gtttgagaca ggacttctat ggaagcacga ggaagtttgc ttcccagaca gttacaagat      2820
     ggcggagaaa cggttaatac aactggaaaa gcgactttct aaaaacccag aactcaggga      2880
     aaaggttgat gctcaaattg cagaatatga acagaaaggc tatgcgcatc gactgaccga      2940
     cgaggaaaaa caatcatccg actacaaacg agtttggtac ttgcccctaa atgtggtcca      3000
     aaatcccaaa aaaccggaaa agattcgttt gatctgggac gcagcggctc gatctggcgg      3060
     agtctcgttc aatgacatgc tacttaaagg gcctgatcta ctgacatctc tggtagctgt      3120
     tctcgtcagg ttcagacaaa ggaacatcgc catctgtgga gacataaggg agatgttcca      3180
     ccagatagcc atacgggatc tcgacaaaca agctcaacga tttctctgga gaagatcatc      3240
     cgattgctca ccagaatgtt tcgtgatgga cgtggcaacg ttcggagcaa cttgttctcc      3300
     aagctctgcc caatttatta agaacaagaa tgccgaagag tttgcagaac agtacccagc      3360
     agcagcaaat gccataatta agagtcacta tgtcgatgac tacctggata gcgtcgatac      3420
     agtcgaggag gcagttcaac tttggaatga cgtgcggtac gttcacgcac aaggaggatt      3480
     tgagatgcga aatcttatca gcaattcctc tgaggtaatg caacacgtgg gagagaccgg      3540
     taatacaaca gtcaagtcta tgaatctgga tgaaacgcag gataatgaac gagtcctcgg      3600
     aatggtatgg aaaccaaaac tagacgtgtt cactttcgat acaacattaa gacctggaat      3660
     tgtggaattg cttacgcggc atgctgctcc aacaaaacgt caagtgctga gtaccgtgat      3720
     gtcctttttt gacccgcttg gattgatcgc gcattttgtg atacaaggaa aagtcctaat      3780
     gcaagatatc tggcgatcag gaaccgaatg ggatgagccg atagcagaca gcttgcatga      3840
     taaatggatc aaatggagtc aacacatgaa ggaaatggcg gccgttcgag tacctcgatg      3900
     tttcttcagt ggtgcagacc atatagcaat gaagggcatg caaattcacg tttttgtcga      3960
     cgctagtcca gaagcatacg catgcgtagc gtatttgaga atcgtcgata atggagtccc      4020
     acgttgcgcc ctgctggctg cgaagtctaa agtggcccct ctgaaaccgg tctccatccc      4080
     taggcttgaa ttacaagcgg cgctgatcgg gagtcgttta gcagatacct tctgtggcta      4140
     tttaagtatt cccgttaagc aacgattctt ctggctcgac tcaacgacgg tactagcttg      4200
     gttacgctca gacagtcgcc gctaccatcc atttgtggcc tttcgagttg gagagatctt      4260
     aagcctcaca gcagtgaacg agtggcgaca tctaccatcc aagttcaacg tagccgatga      4320
     tgctacgaaa tggggatctg ggccaagctt caacccggaa tgtcggtggt acagcggacc      4380
     gtcattctta agtaaaccgg aggaatactg gccggtgctt gtcgaccaca tagtacctgt      4440
     aaccgaagag ctacgcatcg ttcacctcca gcatcacaaa gttagtcaac cattgattga      4500
     tgccgcccgc ttttctaagt ggcaaaagat tcttcgtaca gctgcttacg tattgagagc      4560
     aatcaagaag ttcaaacgac aacaaatatc tgcgtggatt tccagcgagg aatatcgtaa      4620
     cgcagagaac ttattgtggc gtcaggtaca aatgcagagc tacccagaag aatatgaaac      4680
     attgtaccat aatagggaac acccggatca accaaagcag ctcaacaagt caagctgcct      4740
     ggtaccacaa tcaccgtatc ttgatggtga aggagttatt agaatggata gccggattaa      4800
     agctgccccc aatactacct tcaatatgac ccaccctatc attttggcga agaatcatcg      4860
     tataacgtat ctccttgttg atagctttca ctctaaattc ctgcacggga acagtgaaac      4920
     agtattgaac gaggtacggc aacgattctc catcccaaag ttacgaggcc tggtgaagcg      4980
     tgtgtccagg gactgtcaaa ggtgtcgtat acataaaaca accccccaac ctcctaaaat      5040
     ggcccctctg ccgacggaaa gattatcatc gttcatccgt ccgtttacaa acaccggtgt      5100
     cgactacttt ggtccaataa cagtgaaaca gggccgcaat aacgtgaaac ggtgggtggt      5160
     gctgttcacc tgcctttccg taagggcagt ccacctggaa atcgcacata gccttacctc      5220
     tcagtcttgt gtgatggcca ttcgtagatt tgttgctcgc aggggcgcgc ctgagactat      5280
     ttggtcggac aatggcacta atttcgttgg ggctaacaat attctgaaag agcaacttct      5340
     gaaaatcaat gagtcctgtg cagcgacatt caccaatgcc agaactagct ggcgttttaa      5400
     tcctccctac gctcctcaca tgggcggtgc gtgggagcgg ttagtgaggt cggtcaaaac      5460
     ggctatgatc accatcaacg agcatattca tcgcccaagc gatgaggtat tggagactgt      5520
     aatactggaa gcggaagcaa tagtaaactc ccgaccgtta acctacgtac cattagattc      5580
     ttccagtgac gaagcactaa cacccaatca tttcctttta tatggcaccc agggtgtcaa      5640
     tcaacctccg atacctttga aagatactca cgcacctctc agagacagct ggaatatggc      5700
     taagaacatt gtagatgagt tttggaggag atggatacgc gagtatcttc cagagttgac      5760
     aagacggacc aagtggtatc aacctgtgaa gccacttgaa gttggggact tagtcataat      5820
     tatcgacgaa gccaagcgta acggttggac cagaggaaag atcttggatg ttaaaacagg      5880
     gaaggatggt caagtacgta aagctacggt gctgacatca aacggggtgc agacacgtgc      5940
     cgctgtgaac ctagcattac tggatgtggg gcagacatca gaatacaaat ctggtgatct      6000
     cggagctaca cgggaggggg at                                               6022
//
ID   BEL-148_AA-LTR repbase;    DNA;    INV; 617 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-JUL-2020 (Rel. 25.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-148_AA_;
KW   BEL-148_AA-I; BEL-148_AA-LTR.
XX
NM   BEL-148_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-617
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-617
RA   Bao W.;
RT   "Sequence updated with consensus.";
RL   Direct Submission to Repbase Update (16-JUL-2020).
XX
DR   [3] (Consensus)
XX
CC   consensus.
XX
SQ   Sequence 617 BP; 201 A; 111 C; 135 G; 170 T; 0 other;
     tgtcgtcgga cccactgtgc gaccgattct gggtagtgtg agtaccgaga tctggcaaac        60
     tgacgtctat cgtctgtcag cgacgtatga ataggagcat agccatatgt catatggagc       120
     atagatcgtt caaaacgtgt tatgagctag gaagatattt ggacaactaa agtgaattct       180
     attataaatt atactacaag tggcaaatta gagtttgggg agcatttctc ggccgacagg       240
     tttgacaata agctaaaatg taattatact acaactaaat gtaacatatt tagcagttgg       300
     agcgatacac ggctagctat acggattact ggactaaacc tgatccgact agtacgtaat       360
     tggaactgtg agtagatctg aaattacata aggcctcaat tgacatcgtt gttattatag       420
     tatagatcgg ttggagtcag cactacgtta ggaagttcac cagaattgta ggaacaaacg       480
     taaacgtaag atgaactact atataaagaa ccattagaga taatccatcg cttaaaataa       540
     actttcagct ttaaagctgc gctgactaca ggctactaaa aaggcgtttg cattctcctg       600
     gtagtgactt cccaaca                                                      617
//
ID   BEL-14_AA-I repbase;    DNA;    INV; 5467 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5467
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 867-867 (2011).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           46..5430
FT                 /product="BEL-14_AA-I_1p"
FT                 /translation="MEELIVKRNSLFQKVKWELETAKKVLARNPPICEVRE
FT                 RVDRLHRLGDAFFAVQGEIEDCTTDLEAIASVFNYRAEFEERYYQAKAMYI
FT                 QMDDGSVLGDDMKDESGSTLQNAVVALLEAQRVLMSNQAVVSTQTNALTAQ
FT                 LEDARLQPPGSRVPVAEPNLDQLLNVRLPPINIPTFNGNRKEWRSFKDLFA
FT                 STIHNKQTLRDSQKLQYLLSYLEGEAKSLVSSFAITDANYMQVWNKLLERY
FT                 DQNKYTVFSLVKEFLEQPVVSSANPSSLRKLVSTSDEVIRQLSAMGAQYET
FT                 RDPWLIHLLLEKLDKESRSQWAAKLVDLQDPTFQQFLKFLENRCDALETCS
FT                 SFTRTSTTITEAMKRETRKDQARPMEKRLQSFYVESQQCPKCSSEHQIYQC
FT                 ESFKASSVADRRELVQKSRLCFNCLRPSHCVKNCSSKTSCKNSGCNQRHHT
FT                 LLCQQGDSQAANPVQKPIIQSACSSPASELPEQEVHSTDELSTFKTDVSSE
FT                 LPTKVAVLPTALIKIRDKDGSFQLARAMIDSCSGASLISEACMTRLGLSRS
FT                 NARFPVTGVAGSAAGTTKGVVKLEISSRFNDEVILTTEAYVLDVLTAPIPS
FT                 QTIDVKRMKFLEAIQLADPVFWKTGKIDVILGVELFLPMLRIGQVTDDNGL
FT                 PIAQNSVLGWLVAGRFEGGTGIQALCASLNVDSNVNIDKSLRMFWETEEIP
FT                 SQNVLTADETRAVEIFKTTYHRDETGRFVVRLPFDETKPVLGESLNTAIKR
FT                 LRAMERQFLLNPTLKQQYEDFMMEYLRLGHMELVPESEIAKPPNECFYLPH
FT                 HAVHKADSLTTKLRVVFDGSCSSSSGVSLNDRLLVGPNNTENLLDVLCRFR
FT                 TYPIVFVSDIEKMYRQVRVSEDQADFLRVVYRKNPEEPVQHYRLLTVTYGT
FT                 SCAAYLATESLRQAARDSATKYPVAADRILKGFYVDDLMSGANTVDEARTL
FT                 VNEISTILNGAGFALRKWSSNVPELIEDITDSQQGPIPIQFTSELDSVKAL
FT                 GIRWSPREDSFDFNVSLDVTSRNTKRQLLSDASRLFDPFGWLSPCIVKIKI
FT                 LFQQLWLHDLTWDDPLPSAIEEEWVSIKNNLQALEQLRIPRWVANHKGGMQ
FT                 LIGFSDASESAYAAVVYGRSVDSNGKVHITLIAAKTKVAPIQQVTLPRLEL
FT                 NAAVLLTALVKKISSALNHLKLEVNAWTDSTVVLEWLSSHPRKWKTYVANR
FT                 TATILEVLPRSSWHHIPSIENPADCASRGVTPHELLEHPLWWTGPPWLHNE
FT                 TEFLEHLTTDVSNTSQQVSIIHTEVSQKNVIRSSSSFTIEQYLLHRYSSIR
FT                 FVSRILAVITRFIDNLKAARIKHNRKTGPITPAELQASTLWMVRCAQHDMF
FT                 AKELECLWSGTLLPRKSKLRPLHPFIDAEGTLRVGGRLQNADLPYEMKHPA
FT                 ILPGNHRCTTLIIHDAHLSNLHAGPTLLVATLNQRYWILRCHTAVRQVTQN
FT                 CLQCCRMRAKTATQLMGSLPAVRTMPVRAFVHVGVDYAGPITVKSGNPRKP
FT                 LLTKGYIVVFVCLSTKAIHLEAASNLSTATFIEALKRFIARRGLCTEIWSD
FT                 NGTNFVGADRQMQDFFQSTEFETQANRFSSNVGIKWTFIPPSAPHMGGLWE
FT                 AAVKSAKLHLYKVLSRGPHTYEDLCTILAQIEACLNSRPLCAISNSPDDYN
FT                 VLTPGHFIIGQPMNLLPESSVPSVPINRLDSWKMRQKQVEEIWQRWRNEYV
FT                 SSLQPRTKWQNTKDNLQVNRLVLVQNESTPPAHWELARVVAVHPDRHGMVR
FT                 IVTLRRGSSEYQRPIQRLVPLPSA"
XX
SQ   Sequence 5467 BP; 1509 A; 1315 C; 1275 G; 1368 T; 0 other;
     tttatggtcc ttcgcgatcc gggtagaaaa agtaaccggt agaccatgga agaactcatt        60
     gtgaaacgta attcactctt tcaaaaggtg aaatgggagc tcgaaaccgc aaagaaagtg       120
     ctagctcgca atccgccgat ttgtgaggtt agggagcgcg tcgatcggct tcatcgactc       180
     ggagatgcct tttttgcggt tcaaggtgaa attgaagact gcactacgga tttggaagcc       240
     atcgcttcgg tatttaacta ccgtgccgag tttgaggaga gatattacca ggcaaaagca       300
     atgtacattc aaatggatga tggatctgtg ctgggcgacg atatgaagga cgaatcaggc       360
     agcaccctac aaaatgcagt ggttgctctg ctggaagcac aacgtgtact tatgtccaat       420
     caagctgtag tttcaacgca aacgaatgcg ttaactgccc agcttgaaga cgctcggcta       480
     cagccacctg gtagccgagt tccggttgca gaaccaaact tggaccaact gttgaacgtt       540
     cgtctccctc ctatcaatat tccaacattc aacggaaatc gtaaagagtg gcgatcattc       600
     aaggatcttt ttgctagtac aatccacaac aagcagacat tacgggattc gcagaagctc       660
     cagtatttgc tctcttacct tgagggcgag gcaaaaagtt tagttagctc cttcgcgatc       720
     accgacgcta attatatgca agtttggaac aagcttcttg aacgatacga ccagaacaaa       780
     tacaccgtat tttcgttggt gaaggagttc ctagagcaac cagtcgtatc atctgcgaac       840
     ccgagctctc ttcggaagct ggtatcgaca tcggacgaag ttataaggca gttgagtgca       900
     atgggtgccc aatatgaaac gcgtgaccct tggctcatac atctactctt ggaaaaactt       960
     gacaaggagt cccgttccca atgggcagca aaactcgtgg atttgcagga tccaacattc      1020
     cagcaattct tgaaattcct tgaaaaccgt tgtgatgctt tggaaacttg ctcttcgttc      1080
     acgcgaacca gcacaacgat cacggaagcc atgaaaaggg aaacacggaa ggatcaagct      1140
     aggccgatgg agaaaagatt gcaaagcttc tacgtagaat cccagcagtg tccgaaatgc      1200
     tcttcggaac atcagatata ccagtgtgag tcgttcaagg cctctagcgt cgctgaccgt      1260
     agggagttag tgcagaagtc tagactgtgc ttcaactgcc tcaggccatc acactgcgtg      1320
     aaaaattgtt cgtcgaaaac atcgtgcaaa aacagtggat gcaaccagcg gcatcatacg      1380
     ctcctctgtc aacagggtga cagccaggca gcgaatccag tgcagaaacc gataatccaa      1440
     tcggcctgca gttctccggc ctcagagctg ccggaacagg aggttcactc tacggatgag      1500
     ctgtcaacct tcaagacgga tgtgtcgtca gaactgccta ccaaagtcgc ggtattacca      1560
     acggcactga tcaaaattcg cgacaaagat ggttcgtttc agctcgcaag agccatgata      1620
     gattcctgct ctggggcgtc actaatcagc gaagcttgca tgacgcgcct tggactttca      1680
     agaagcaacg ccagatttcc cgtcactggt gtggcaggat ccgcagcagg tactaccaaa      1740
     ggtgtggtaa aactggaaat atcgtcccga ttcaacgacg aagtgatctt aacaacagag      1800
     gcatacgttc ttgatgtact gactgctccg attcctagcc agactatcga cgtgaagcga      1860
     atgaagtttc tggaagcaat ccagttggct gatccggtgt tttggaaaac aggaaaaatc      1920
     gacgttatcc tcggggttga actctttcta ccaatgcttc gtatcggtca agtaaccgac      1980
     gataatggat tgccaatcgc acaaaactca gtgcttggtt ggctggtagc tggacgattc      2040
     gaaggtggaa ctggcattca agctctatgt gcgtccttaa acgtcgattc aaatgtcaac      2100
     attgataaat cgctacgaat gttttgggag actgaagaaa ttccttctca aaatgttctt      2160
     actgcagatg aaacacgagc cgtggaaatt ttcaagacta cttaccatcg cgatgaaact      2220
     ggtcgatttg tcgttcgact accattcgac gaaacgaagc ccgtgctagg agagtcgctt      2280
     aatacggcga tcaagagatt acgtgccatg gaacgacaat ttctattgaa cccaacgctg      2340
     aagcaacaat atgaagattt catgatggaa tatctacgtt tgggtcacat ggaactcgtt      2400
     ccagaatccg agatagcaaa acctcccaac gaatgttttt atctgccaca ccacgctgta      2460
     cacaaggcgg acagcttaac gaccaaattg cgcgtcgttt tcgatggttc ctgtagtagc      2520
     tcatccggtg tatcactcaa cgatcgtttg ctcgtcggtc cgaacaacac cgagaaccta      2580
     ctcgatgttt tgtgtcgctt ccgcacatac ccgatagtgt tcgtaagtga tattgaaaag      2640
     atgtataggc aagttcgcgt atccgaagat caggctgact tcctcagagt tgtgtatagg      2700
     aagaaccccg aagaacctgt tcagcactat cgtctgttaa ctgttaccta tggaacttcg      2760
     tgtgccgcat accttgcgac ggaatcactt cgacaagccg cccgagacag tgctacgaaa      2820
     tacccggttg ccgcagatcg aatcctaaaa ggtttttacg tagatgattt gatgtccgga      2880
     gcaaatactg tggacgaagc tcgaacttta gtcaacgaga tttcaactat cctcaacggt      2940
     gctggatttg cccttagaaa gtggtcgtcg aatgttcctg agctcattga agacatcact      3000
     gatagccagc aaggtccaat ccctatacaa ttcacgagtg aactggattc agttaaagct      3060
     ttgggaatac gatggtcgcc gagagaagat tcgtttgact tcaacgtttc actcgatgtc      3120
     acaagtcgca acaccaaacg tcagcttctt tcagacgctt caaggctgtt cgatcccttt      3180
     gggtggctat ctccgtgtat cgtcaagatc aaaatcctct ttcagcagct ctggttgcat      3240
     gatctgactt gggatgaccc actaccatca gccattgaag aagagtgggt gagtatcaag      3300
     aataatcttc aagctttgga gcaattacgc attccacgtt gggttgcgaa tcacaaaggg      3360
     ggaatgcagt taatcggatt ctcagatgca tcggagtcag cctacgctgc agttgtctat      3420
     ggtcgatctg ttgattcgaa tggtaaagta catattacac tcattgccgc caagaccaag      3480
     gtggcgccga ttcagcaagt tacgcttcct cgacttgaat tgaatgctgc tgtgcttcta      3540
     acggcgctgg taaagaaaat atctagtgcg ctcaatcacc tcaaactaga agttaacgct      3600
     tggacagatt ctacagtggt tttggaatgg ctgtcatcgc accctcgaaa gtggaaaacc      3660
     tacgttgcta ataggactgc tactattctg gaagtacttc caagaagttc atggcatcac      3720
     attccatcca tcgaaaaccc agcagactgc gcatctagag gagtgacacc acatgaactt      3780
     ttggaacacc ctctttggtg gactgggccc ccgtggcttc ataacgaaac tgaattcctt      3840
     gagcatttga ctactgatgt ctctaataca agtcaacaag tttcgataat tcacactgaa      3900
     gtctcgcaga aaaacgtcat tagatcgtca tcgtctttca ccatcgaaca atatcttctg      3960
     caccgctatt catcaattcg attcgtcagc cgaattctcg ctgtcatcac tcgcttcatt      4020
     gataatttga aagctgcacg tatcaagcac aatcgcaaga ccggaccaat taccccggca      4080
     gagctgcaag catcaacttt gtggatggtt cgctgcgcac aacacgacat gtttgctaag      4140
     gaactggaat gcctttggag tggaactctt ctacctcgaa aaagcaaact tcgcccgttg      4200
     catcctttca ttgatgctga aggaacactt cgagttggag gaagacttca aaacgccgat      4260
     ttgccgtacg aaatgaaaca tccagcaatt ttacctggta atcaccgttg cacaacactt      4320
     atcattcacg atgcgcattt gtccaaccta catgctgggc caacgttgtt ggtagcaact      4380
     ctcaatcaac gctattggat tttgcgatgc cacactgcag tccgtcaagt aacacagaac      4440
     tgcctacaat gctgtagaat gagagcaaag actgcaactc agctcatggg aagcttgcca      4500
     gctgttcgca ctatgcctgt gcgagctttc gtccacgttg gagttgatta tgctggtcct      4560
     atcaccgtaa aaagtggaaa tccacggaaa ccgctactaa ccaagggcta tatagtggtt      4620
     tttgtgtgcc tgtccactaa ggccattcac cttgaggcgg ccagcaatct atcaacagct      4680
     acgttcattg aagcgctcaa gaggttcatc gcccgccgtg gactatgtac tgagatttgg      4740
     tccgacaatg gaacaaattt tgtcggtgct gatcgtcaaa tgcaggattt tttccaatct      4800
     acagaatttg aaacacaagc caaccgtttt tcatccaacg ttggtatcaa gtggacattc      4860
     ataccacctt ctgcacccca tatgggtggt ttatgggagg ctgcggttaa gagcgcaaaa      4920
     ctgcatctat acaaagtgct cagccgtgga ccacacacgt acgaggactt gtgtaccata      4980
     ctggctcaga ttgaggcatg ccttaattca aggccattgt gtgctatctc caactcacca      5040
     gacgactata atgttctgac gccagggcat ttcatcatcg ggcagccaat gaacttgttg      5100
     ccagaatcat ctgttccgag tgttcccata aatcgtcttg actcttggaa aatgcgccag      5160
     aagcaggttg aagaaatatg gcagcgttgg aggaatgaat atgtgtcatc cctacaacca      5220
     cgcacaaagt ggcagaatac gaaggacaat ttgcaagtca acaggcttgt tctagtgcaa      5280
     aacgaaagca ctccaccagc tcactgggag ctcgcacgtg tagttgcagt ccaccctgat      5340
     cgtcacggca tggtgaggat tgtgacacta cgtagaggat catcggagta tcagcgaccg      5400
     attcaaagac tcgtgccact gccgtctgcg taggtcattt gaggcattcg cctcaaggcg      5460
     gggactt                                                                5467
//
ID   BEL-14_AA-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-184
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 868-868 (2011).
XX
DR   [2] (Consensus)
XX
CC   LTRs identical to each other.
XX
SQ   Sequence 184 BP; 55 A; 37 C; 26 G; 66 T; 0 other;
     tgttcagaat aaaaatttat tgctgtgtat tagctacttc ctaaccctca cgcaatttga        60
     gtttatacgc ttcttttgtt tgctttgtta gttatataaa taaacagaaa cgttcggtcg       120
     ctacagtaca tcgcgattct tatttcgacc aaaattccga aatatacgct acaattcgca       180
     atca                                                                    184
//
ID   BEL-14_AnFu-I repbase;    DNA;    INV; 6157 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6157
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 666-666 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           647..5926
FT                 /product="BEL-14_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPTTDQPTGSTASTGDKVVVQPAPITDRQFRRLKRIY
FT                 SDCLRSIDQFKEFVDDYNAERHSVQVQVQLEQLEDVRSEFISARRQLLHED
FT                 DCDEDALVEEYKQFNKTFIEVKGFLKSNLHPEAIMMPAASSTILQTSTYRP
FT                 KVRLPEINLPSFDGDVTKWLTFKDRFTSMVHEVVELSDVTKLQYLLTALKG
FT                 DAATLYDHTQLIAENYDITWKSLHERYDDSKRIKREHFKALYQLEPMNGSS
FT                 VEELSRLVNETKRLVRGMERTSEPVKHWDTPLTSLVIYKFDPKTLLAWEQH
FT                 SADQEADSYKELMIFCEKQIKILNSCTMRNKTSIDTKPAKTVSGVRNQIPR
FT                 SKKDNATSLACSVQTTNPSVIVCPVCKADHVLSKCSSFSTMDRSQRQEQVK
FT                 EHRLCFNCLRSGHSIRFCRSHSRCEHCKRRHHSLLCDKNASAVSETQVVPI
FT                 SATLQDGSKQERKMIWLSTAQVLVSNWNGEPVPARALLDMGAQSNFITERL
FT                 AQQLKLRKTRVQKPLFGVGTVALTSSSTVTTTVKSVNSSHAATLEFLVLTS
FT                 VTADFPPRSIDVQQWNIPSGFVLADPGFNKREKIDLLLGAEIFAELLEQGQ
FT                 LSLAPNLPRLLKTKLGWIVSGKMITNPEDTNQYDLACCSVMEERFNNSMDR
FT                 LVSLENLPEERIPSEDDIACMKHYEETTRRSRDGRYIVTLPKLPQFSTLLG
FT                 ESREIALRRFLAIERRMRREKELNDAYKEFMQEYISLGHMSCIGTYSEFEG
FT                 KSSEVAYYLPHHAVWKAGSSTTRCRVVFDASCKTSSGRSLNDVLITGPQIQ
FT                 ENIICIQLRFRMKKIAVVADVAKMYRQVLVDDNDKALQRILWRDHSGEQLR
FT                 VYELKTVTYGTACAPFLAVRTLQRIFEDHGSKYPKALACKRDFYVDDLLSG
FT                 ADSVQEAREMADQLNKLMNEGQFCLRKWASNHHGALIGIPSEQHATGSQLE
FT                 LATEQDSISTLGLVWTPSKDTLKVQVRVPSEVEVKTKTHVLSCIARLYDPL
FT                 GFLDPVKMRAKLIMQTIWALKDAEGKPWSWDKELPKPISQEWSSFVTQLKL
FT                 LEDVKIPRLAVSNSAEQYQLHIFCDASEKGYGACCYVRSLAATGTVVVHLL
FT                 ISKSKVAPLSQRMTIARLELCGALLGSRLYSVVKEALVTDVSCYMWTDSLT
FT                 TWHWIQSPHSRWKTFVANRTAKIQALTRGVEWRHVPGKENPSDLASRGCDP
FT                 EEFLQQSALWWSGPGWLSQSEDQWPEPPVGKLTIVEEQRATTLLVMSEKEE
FT                 SFSDRIFSRYSTYAKLRRVIAYCLRYIAALRKQNHQGESTALTSEELRHAE
FT                 DAICRIAQRDSFAEELKTLGTGKNIATTSLLKGCNVTVDDKGILRVQTRIG
FT                 NAKLSEDVKYPIVIAKRHALAKLLAEHYHAELLHAGPQLMITTIRQRFWIM
FT                 GARSVVRRAYHQCIRCFKSKPKLIIQPMAPLPTTRVNKARPFAISGVDYCG
FT                 PVMIKAHHRRAAPTKAFIAVFVCFVTRAVHLELVSDLSTAAFLAALRRFVS
FT                 RRGAVSEINSDNGTNFKGAANELQRLHELLQSSNHKEAITNWTAERGIKWK
FT                 FIPPRAPHFGGLWEAAVRSMKYHLIRVLGTAAASYEDLTTLLTEIEACLNS
FT                 RPLTELSADSTDLEALTPGHFLTGSHLKYISEIDLKDIPENRLNHWRVMQQ
FT                 RLQHFWSRWQREYLQQLRARTKWHNPAVPIKPGMLVILHEDNMPPMKWPLA
FT                 RITEVHPGKDGVVRVVTLRTAQASNVKRPVVKLSILPTEN"
XX
SQ   Sequence 6157 BP; 1865 A; 1194 C; 1547 G; 1551 T; 0 other;
     ttggtccttc gaaccggatc gctggattag ggacagggct tacagttgaa aatatatcat        60
     tgccaacagt tagaagtgat tacactgtgg gataataagt gaattcttat taaccatact       120
     ttctgcgcac ttgtaagagt actagtgatg cgtcggtata cgcattcgtg tgcagcaaag       180
     gaactttgaa cgtgtaaaag gttcatttct taaagtggtt gtgctgcgtg tgaaacatta       240
     atacgagagc gagcgatctc taacccgatg atcactgata agtgattgga cgtattagtg       300
     tgaagcgaag tgaattgatt cgcagacact tttggcgatt tgtgaggtca acggcatcgt       360
     ggttgattgg ctcagactgt gcgcgtcagg tgcaatgtgt gtgtaacgtt tacgcgtagt       420
     gcgtgttgag actgtataga aacgatactg ccatatcagt gcagccattt cggtatcgta       480
     gaagcgcgtc acatggttac agtgtgggta ataagtttat gcgtactttc aatacccgaa       540
     ttaaatccat cgtttatcgg agacaaacta gtggctttaa gctcattata agttctggtg       600
     attaaaggaa cgatagtgtc ggaccggaat aatttaattc accaatatgc ctaccacgga       660
     ccagccgact ggttccacag cgtccactgg ggataaggta gtggttcaac ctgcccccat       720
     aacggatcga cagtttcgca ggttgaagag aatttacagt gactgtttgc gtagtatcga       780
     tcaatttaaa gaatttgtgg atgattacaa tgcagaaagg cacagcgtgc aagtacaagt       840
     gcaattggag cagctggagg acgtgagaag cgagttcatt agtgcgcgaa gacaattact       900
     gcatgaagac gattgtgatg aagatgcctt agtggaggaa tataaacaat ttaataaaac       960
     ctttatcgaa gtaaagggat ttcttaagag taacttgcat ccggaagcta taatgatgcc      1020
     agcagctagt agcacaatat tgcaaacatc tacgtatcgc cctaaagtac ggctaccgga      1080
     aataaatttg ccttcgttcg atggtgacgt cacaaaatgg ctaaccttta aggaccgttt      1140
     cacatccatg gttcatgagg tggttgaact ttcagacgta accaagctgc aatatttgtt      1200
     aacagccttg aagggagacg cagctacttt atacgatcac actcaactca tagctgagaa      1260
     ttacgatatt acgtggaaat cattacacga acgctatgat gattccaagc gtataaaaag      1320
     ggaacatttt aaggcattat atcagttgga accaatgaat ggatcgtcgg tcgaagaatt      1380
     atcgcgttta gtgaacgaga caaagagatt agtgagaggc atggaacgaa caagtgaacc      1440
     ggtaaagcat tgggacacac cgttaacgtc gctcgtgatt tataagtttg atcctaaaac      1500
     gcttctagca tgggagcaac actcggctga ccaagaagct gattcgtata aggaattaat      1560
     gattttttgt gagaagcaaa tcaagatcct taatagttgt actatgcgaa acaaaacgtc      1620
     aattgatact aaaccagcaa aaacagtcag tggtgtgcga aatcaaattc ctcggtcgaa      1680
     gaaagacaat gcaacatcgt tagcgtgttc cgttcaaacg acgaacccat cagtaattgt      1740
     gtgcccggtg tgcaaggctg atcatgtgtt atcaaagtgt agttcctttt caactatgga      1800
     ccgttcgcag cgacaagaac aggttaagga acataggctg tgttttaact gtctgaggag      1860
     tggtcacagt attaggtttt gtcgatcgca ttcgaggtgt gaacattgta aaagaagaca      1920
     ccattcgtta ctgtgtgata agaatgcatc tgctgtcagt gaaacgcaag tcgtccccat      1980
     tagtgcaaca ttacaggacg gcagtaagca ggaaaggaaa atgatttggt tatctacggc      2040
     acaagtgttg gtgtcgaact ggaatggtga acctgtgccg gcgcgagcgt tattggatat      2100
     gggcgctcaa tctaacttca taaccgaacg tttagctcaa cagttaaagt tgcggaagac      2160
     gcgagtacag aaacctctgt ttggagtagg aacggtggcc ttgacctcaa gcagtacagt      2220
     tacaactacg gtcaaatcag taaactcctc acatgcggcc acattagagt tcctcgtgct      2280
     aacaagtgtc accgcagact ttcctccaag gtcaatagat gtacagcaat ggaacatacc      2340
     atcagggttt gtattggctg atccaggttt taataaacgt gagaagattg atctactcct      2400
     tggtgcagag atatttgctg agctgttgga gcaaggacaa ctaagtttag cgccgaacct      2460
     tccaaggtta ttgaaaacca agcttgggtg gattgtaagt ggaaaaatga ttacgaaccc      2520
     cgaagacacg aaccaatatg atcttgcctg ctgtagcgtg atggaagaac gctttaacaa      2580
     ctcgatggat cgtctcgtat cgctcgaaaa tttgccagaa gaaaggattc cgtcagaaga      2640
     tgacatcgca tgtatgaaac attatgagga gacaactcgg cgtagtagag atggcaggta      2700
     cattgtaact cttcctaaat taccacagtt ttcaacattg cttggtgagt cacgggagat      2760
     tgccttgaga cggtttttgg caatagagcg aagaatgaga agagaaaagg aacttaacga      2820
     tgcttataag gagttcatgc aggaatatat aagcttgggc catatgtcct gtataggcac      2880
     atactcggag ttcgagggga agagttcgga ggtggcatat tatcttccac atcacgctgt      2940
     gtggaaggct ggaagttcaa cgacgagatg cagggtagtc ttcgatgcat cttgcaagac      3000
     gagctcaggg cgatcgctga acgatgtcct gatcaccgga cctcagatac aagaaaacat      3060
     catatgcata cagttgaggt tccggatgaa gaagattgct gtggtggcgg atgtggcgaa      3120
     aatgtaccgg caggtgctag tagatgacaa cgataaggca ttgcagagaa tcctgtggag      3180
     agatcattct ggagaacagc taagagtgta cgagcttaaa accgtgacgt atggcacagc      3240
     atgtgcacct ttcctagctg tacgtacgct acagcgtatt tttgaagacc acggaagcaa      3300
     gtacccaaag gcgttagcat gcaaaaggga tttttacgtt gatgatttgt tgtcaggtgc      3360
     agattccgtt caagaggctc gagaaatggc ggatcagtta aataagttaa tgaacgaagg      3420
     tcagttctgc ttacggaaat gggcatcaaa tcatcatgga gcgttaatcg gtattcccag      3480
     tgagcagcat gcaaccggca gtcagttaga acttgccact gaacaagact caatttcaac      3540
     actaggattg gtttggactc caagcaaaga tactttaaag gtccaggtac gggtaccaag      3600
     cgaagtagaa gtcaaaacaa aaacacatgt tttatcatgt atcgctcgat tgtatgatcc      3660
     gttgggattc ttggacccgg tcaagatgag agcgaagctc attatgcaga cgatatgggc      3720
     attgaaagat gcggaaggaa aaccttggag ttgggataag gagctgccaa aaccaataag      3780
     tcaagaatgg tcatcatttg ttacccaact gaagctgtta gaagatgtga aaataccacg      3840
     attagcagta tccaattccg ccgagcaata tcagttgcac atattctgcg atgcatccga      3900
     aaagggatac ggtgcgtgct gttatgttcg tagtctggca gcgacaggaa cagttgtggt      3960
     tcatctatta atttcgaagt ctaaagtagc acctttatcg cagagaatga ccattgctag      4020
     acttgaattg tgtggagcat tacttggaag tagattgtat agtgtggtga aggaggcgtt      4080
     ggtaaccgat gtgtcttgct acatgtggac tgattctctc acgacatggc attggattca      4140
     atcgccacac tctcgttgga aaacttttgt tgccaacagg actgcaaaga ttcaggcgtt      4200
     aaccagaggg gtagagtgga gacatgttcc tggtaaggaa aatccaagcg atttggcatc      4260
     gagaggatgt gatccggaag aattcttgca gcagagtgca ctatggtggt cggggcctgg      4320
     ttggctttcc caatctgaag atcagtggcc agaacctcct gtgggtaaac tgacaattgt      4380
     agaggaacag cgtgcaacca cgctgttagt aatgtccgag aaagaagaga gtttctcaga      4440
     tcgaatattt tcgcgatatt caacatacgc gaaattgaga agagtgattg catattgctt      4500
     gcgttacatt gctgctttgc ggaaacaaaa tcatcaaggg gaatcaacag cgctgacgtc      4560
     tgaagagcta aggcatgcag aagacgcaat ttgtcgtatc gctcaacgag atagtttcgc      4620
     cgaagaactg aagacactag gtacgggaaa gaacatagct acaacatcgt tgctgaaagg      4680
     atgcaatgtt acagtagacg acaagggtat cctgagagtg cagacccgta ttggaaatgc      4740
     aaagctttca gaagacgtta agtatccaat agtaatcgcc aaacgtcatg cgttagcgaa      4800
     actgttagcc gaacattatc atgccgaatt attgcacgct ggaccacaat taatgataac      4860
     gaccatcaga cagcgatttt ggatcatggg agcaagatca gtagtgaggc gagcttacca      4920
     tcaatgtata aggtgcttca agtccaaacc gaagttaatt atacaaccca tggctcctct      4980
     tccgactaca cgtgtgaata aggcgcgacc tttcgcgata tcaggagttg attattgcgg      5040
     accggtaatg ataaaggcac atcaccgacg agcagcacca accaaggcgt tcatagcagt      5100
     gttcgtatgc tttgttacac gtgccgtgca tctagagtta gtttctgact taagtactgc      5160
     agcgttttta gcggctctta gaagatttgt ttcacggcga ggagcagtat cagagatcaa      5220
     ctctgacaac ggaacaaact tcaagggtgc cgcgaatgaa cttcagcggc tgcatgagtt      5280
     actccagtcg tcaaaccata aggaggcaat caccaactgg acggcggaaa gaggaataaa      5340
     atggaagttc atccctccac gagccccgca ctttggaggc ttgtgggaag cagctgtacg      5400
     ttccatgaaa tatcatctaa tcagagtcct gggtacagct gcggcaagct acgaagacct      5460
     gacaacactg ctgacggaaa ttgaggcgtg cctcaattca cgcccactca ctgagttatc      5520
     tgcggattcg actgatttag aagcccttac tccaggtcat tttctaaccg gttctcattt      5580
     gaaatatatt tcagaaattg acttgaagga cataccagaa aatcgattga atcattggcg      5640
     tgtgatgcaa caaaggcttc agcacttctg gtcgcggtgg cagcgcgagt acttgcaaca      5700
     gctaagagca aggacaaaat ggcacaaccc cgctgttccg atcaagcctg gaatgcttgt      5760
     aatactccat gaagacaaca tgcctccgat gaagtggccg ctagcacgca taactgaagt      5820
     acatccaggc aaggatggag tcgtcagagt ggtcacgttg cgcactgcac aagcgtcgaa      5880
     cgtaaagcgt cctgtggtta aattaagcat attaccaacg gaaaattagg gggtaaaggg      5940
     cagatagcag gaactagagc gtctcgtaag aggaatctga gtgaatttaa aatatcggaa      6000
     agggaattag gttgcagtaa aatatgaaat tgattactta ctttaagtta caactcggaa      6060
     tactagttgt tataacgccg ttacgaaata atgaattgaa ctcaagatta agtaaaatta      6120
     ccacttaagt aaaataacgg attttaggtg gtcggaa                               6157
//
ID   BEL-14_AnFu-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-176
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 718-718 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 176 BP; 72 A; 30 C; 32 G; 42 T; 0 other;
     tgttggatgt ttacatttat actaagttat gggagatgct ataatgaact ttgaattaac        60
     gaataacaaa gaagaactag aataagaaca aaatttagag agaataaacc agtccgagta       120
     gagcaatcat tgaaaccaca cgcgtcccta acaagcaccc tttagagcta cgaaca           176
//
ID   BEL-14_CQ-I repbase;    DNA;    INV; 6744 BP.
XX
AC   AAWU01030126;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_CQ_;
KW   BEL-14_CQ-LTR; BEL-14_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6744
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 181-181 (2011).
XX
DR   Genome; AAWU01030126; Positions   18807   25550.
XX
CC   Positions [5687-6265] - Integrase core
CC   'GTTGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1369..5316
FT                 /product="BEL-14_CQ-I_1p"
FT                 /translation="MPPKIVPSTSKATLKQLQTKLKSLQSSFNIIEKFKNE
FT                 FKEDTTANEITVRLERFDELWERIVECSSEVECHDGYVAVEGDPFTVERLK
FT                 FEQTYFEVKSFLLDKIKDMQDGSTLDQTTRTADSSFHAVQDHVRLPQIKLR
FT                 TFDGNIDEWFSFRDLYSSLIHWKQELPEVEKFHYLKGCLEGEARSLIEPIK
FT                 ITTRNYQVAWDLLLKRYNNSKLLKRRQVQALFKLPVLTKESVTDLHRTLDS
FT                 FQRTVQSLDQIVQPADYRNLLLVEILSSRLDPYTRRGWEEYTSTQENGTLV
FT                 NLTDFIQRRISVLESLPPKLSTGTSESKQESSQGLRKKPFSVHVSNNAVQS
FT                 TTQKCQACSESHYLHTCPTFTKMPISNRESLIRSHSLCRNCLRSGHLAKKC
FT                 QSKYSCWKCKGRHHTMLCFHAEGAATQNQTGKRVSSDGSGPSTAKPTETSS
FT                 NSATTDSVSSNAATGQSSSILLATAVVLVEDNEGNTVTARALLDSGSECNF
FT                 IAERLYQRLNVSMQKVDVSVVGIGQAAMKSKRRIQAVVKSRTSPYNQEMSF
FT                 LVLPKVTVNLPTVSINTTNWRIPDNVELADPTFFHSRVVDLVLGIQHFFNF
FT                 FQTGKAIPLGNELPRLTDSVFGWVVSGEVSSPCSLTQITCNMAISDSMEEL
FT                 MSRFWSCEEVGTGNIYSPEETRCEDQYARSVSRAANGRYTVGLPKNEQTWA
FT                 QLGESRTMATRRLLGLERRLAQDAALRKQYQDFMMEYLELGHMKKVEAGPA
FT                 NDSPRCFLPHHPVVREESTTTKVRVVFDASAKTSTGLSLNDVLLVGPTIQP
FT                 DLRDIVLRSRMRQVMVVSDVEKMFRQIDMAPEDSPYQSILYRFNPEEEIAT
FT                 YELTTVTYGTKPAPFLATRTLKQLAQDEQQRFPLAAQALETDVYMDDVISG
FT                 ADDVATATELRAQLDSLLGSGGFKLRKWASNEPSVLRGVARENLALPDEID
FT                 WDQEASVNTLGLKWLPKTDCFRFKFKNPAVTPGQPLTKQLILSIIATLFDP
FT                 LGLLGASLVLLKMFMQKLWTLQRVDGTRYDWKDPLPPTVGEEWRKLSQHLG
FT                 VLNNIRIPRCTVIKGAVDIQIHCYTDASEKAYGACVYIRSKNVERKLARRL
FT                 LTSKSKVAPLKQQPLPRLELNGSDLGADLVEWVIRVLGKRFPVFYWTDSTC
FT                 VLLWLKKPPSYWQTYVGNRVARIQRITEELGAVWNHIPGVSNPADLISRGV
FT                 PPEELEGNEMWEEGPDWDDEEPSSWPAQPDLSGEEAPERRRVVVACVATVE
FT                 FIDILLSRFSSYISLIRAVALARRFSEANVWIRHTEGAEGSGRSHRPISSK
FT                 NHIC"
FT   CDS           5465..6661
FT                 /product="BEL-14_CQ-I_2p"
FT                 /translation="MVLPAKHRFTELLFKYYHVLLLHGGPTLVLTSVQYWP
FT                 LGGKDLVRLVIHKCKKCYLAKPTSIQQQMGNLPKARVTVSRPFSQTGVDYF
FT                 GPVYVKAGRGRQPTKAYVALFVCMATKAVHMELVTDLSTECFLQALRRFIS
FT                 RRNRPTDIYSDNGTNFVGAKNVLEQLLKQLKDVSHHEKIARVCELEGIRWH
FT                 FNPPSAPHFGGLWEAAVRSAKHHLLRVLGENSASFEDYNTLLTQVEACMNS
FT                 RPLTALSNDPTDLEPLTPGHFLTGASLQALPEPDYSHIPGNRLNRWQMVQQ
FT                 QTQNFWKRWRSEYLTQLQSRTKNWQHPKKVEVGKLVVIVDNNQPPMRWKMG
FT                 RIHELHPGEDGVVRVVTVKTATNLLQRPVAKLCILPSQEEDEEESSAQPEA
FT                 TAVEE"
XX
SQ   Sequence 6744 BP; 1739 A; 1672 C; 1760 G; 1573 T; 0 other;
     ttagtggtcc ttcgaaccgg atcaacgttc cacggtacca ggaggatcta tctggtgtcg        60
     gacaaaggga ctaggatcgc gttggtcgct ggaggacaaa ggaaatcatc gcttcgccgc       120
     catcgcggat tcaaacaata ccgtctgtac gtcatcatcg ggctattgtc cacggacgcc       180
     atcgcgggca tcattggcgc caacagcacg cggtcacaca cgcacccgcg aggaaggact       240
     tcgccattgg ttcatcgctg gacatcaccg aacaaccgga gttgttcact tccgttcagg       300
     taaagtagaa ctgcacaggt gtatgtctat gccgaagcct tctacagcca taaactaaca       360
     cacgcacttc gactaccact ctctacgatc cggacggtcg actaccgtcg caaacttcca       420
     tctactgcca tcgggttgga gcacccggcg gaatcgggtg aactcgccgt ttcgagctga       480
     tttcacgagc ggtcgcggaa cggaagacaa cgcatgaggg acaggacgag ttcccggagc       540
     gttcactgcc tgtaacgcat gagggacagg acgggttccc ggagcgttca ctgcctgcac       600
     cacgaggctg gccattgact acggccattg aggatcaccg cacgctgatc tacgacttcg       660
     acttgacatc agtagatgag gcagtttgtc caggtaaaaa cttaaaaata gatatgtctt       720
     gtcgaagtta agactttttg tatgctgcac ctaaaaataa acttcacttc tcgacgaatc       780
     tgcgttggta ctacttcttg gcgagcaatc cctgtactca atcaattgag ggtcgtttca       840
     tctggctggt tgcttcggat ttggtgacgt gtctggttgt ccaggtaaag cacacgtata       900
     tgtctaccga agccaaccat ttcgatacta catccgcact ttctctcgtt acgttcttct       960
     gctgaaatac actcgctttg gagactgact gacgttcttg gcaaggttca aactcgattt      1020
     ctgcaacgtg gactctgggg gtggcacacc tgttagaccc acaggtaaag ctagaagtat      1080
     atgtctaccg aagcttcata ctgtggtact acataagttt ccctctgtcg atgtttgccg      1140
     cactacttgg ttgattggct ggagagatca ttacgcccac gcacgcacgt acacacattt      1200
     gtggatcatt tcgttgttgg agaggactgt actggatatt caactcgagc cggccagcac      1260
     tgctgttagt tgtctaggta aagctacagt atatgtccgg tcgaagttgg acgtttttgg      1320
     aatactacac cgtacattct cttctcgtta ctatcatcaa caacaacaat gccgccgaag      1380
     atcgtgccat cgacctccaa ggctaccctt aaacaacttc aaaccaaact gaagagtctg      1440
     cagagctcgt tcaacatcat cgaaaagttc aagaatgagt ttaaggagga caccactgcc      1500
     aacgagatca ctgtccggct tgagcggttc gatgaattgt gggagcgaat tgttgaatgt      1560
     tcttctgaag tggaatgcca tgacggttat gttgcggtgg aaggtgatcc attcacagtt      1620
     gaaaggttga aatttgagca gacctatttc gaggtcaagt cgtttttgct tgataaaatc      1680
     aaggacatgc aagatgggtc tacactagat caaacaactc gaactgctga ttcttcgttt      1740
     cacgctgttc aagaccacgt tcgcctaccg caaatcaagc ttcgcacttt cgacgggaac      1800
     atcgatgaat ggttcagctt cagggatctc tattcatctc ttattcactg gaagcaggaa      1860
     ctacctgagg tggagaaatt ccactatctc aagggatgtt tggagggaga agcgcgatca      1920
     ctaatcgagc caatcaagat caccacacgg aactaccaag ttgcttggga cttgttgctg      1980
     aagcggtaca acaacagcaa gctgctgaag aggagacagg ttcaagctct tttcaagcta      2040
     cctgttctca ccaaggaatc ggttacggac ttgcacagga cgctcgacag ctttcagagg      2100
     acggtgcaat ctctggatca gattgtccaa cctgcggact atcggaactt gctgctggtc      2160
     gagattctga gctctcgttt ggatccttac accagaaggg gttgggagga gtacacttca      2220
     acgcaggaga atggcacgct ggtcaatttg acggatttta tccagcgtcg catttcggtt      2280
     ctggaatcac ttccaccgaa attatccact ggaacttcag agagtaaaca agaatcatcc      2340
     caaggactca ggaagaagcc gttttcagta cacgtgagca acaacgcggt acagtcgaca      2400
     acacaaaagt gtcaggcgtg ttcggagtcg cactatcttc acacgtgtcc gacctttacg      2460
     aaaatgccga taagcaacag agagtcactg attcgaagcc actcgctctg tcggaactgc      2520
     ttgcgaagcg gacatctcgc caagaaatgt caatccaagt attcctgctg gaaatgtaag      2580
     ggacgtcatc atacgatgct gtgcttccat gcggagggag ctgccacgca gaatcagacg      2640
     ggaaaacggg tctcgtctga tgggagcggt ccgtcgaccg ctaagcctac tgaaacttct      2700
     tcaaactcgg cgactacgga ctcggtgtca tccaacgcgg ctaccggtca gtcgtctagc      2760
     atcctcctcg cgactgcggt tgtacttgtc gaggacaacg agggcaacac cgtcaccgca      2820
     cgcgcgctgc tggactctgg ttctgaatgc aattttattg cggaacgact ttatcaacgg      2880
     ttgaacgtgt ctatgcaaaa ggttgacgtt tcggtcgttg gcattggaca agcggccatg      2940
     aagtccaagc ggagaataca agctgtcgta aagtctcgga catctcccta caatcaggag      3000
     atgagttttc tggtattacc gaaggttact gtgaacctac ccacagtttc catcaacact      3060
     acgaactgga gaattccgga caatgttgaa ctcgctgatc cgacgttctt ccattcacgg      3120
     gttgtggatc tggtactcgg cattcaacat ttcttcaact tcttccaaac gggaaaggcg      3180
     attccgttgg gcaacgaatt gccgcgactc accgactcgg tattcggttg ggttgtttct      3240
     ggagaagtgt cgtcaccatg tagcttgacg caaatcactt gcaacatggc gatatcggac      3300
     agcatggagg agctgatgtc cagattttgg tcctgcgagg aagtaggaac tggtaatatc      3360
     tactccccag aggaaacgcg ctgtgaggac cagtatgcac gctcggttag ccgcgcagcg      3420
     aacggacggt acactgttgg acttcctaaa aacgaacaaa cctgggctca attgggagag      3480
     tccagaacga tggccaccag gcgtcttcta ggcctggaac gaagacttgc tcaggacgca      3540
     gcacttcgta agcaatacca agacttcatg atggagtatc tggagcttgg tcacatgaag      3600
     aaggtggagg cggggccagc gaacgactcc ccgcggtgct tcctaccgca ccatccagta      3660
     gtaagagaag aaagtactac cacgaaggtg agagtagtct tcgacgcgtc ggccaaaacg      3720
     tcgaccgggc tctctctcaa cgatgttcta cttgttggac cgaccattca accagatctt      3780
     cgagacattg tgctacggag tagaatgcgg caggtgatgg ttgtatcgga tgtggaaaag      3840
     atgttccgcc agatagacat ggcgccggag gattcacctt accagagcat tttgtaccgc      3900
     ttcaaccctg aggaggaaat cgcgacgtac gaacttacga cggtgacgta cggtacaaaa      3960
     ccggcaccgt ttctcgccac tcgtacacta aagcagctag ctcaggacga gcagcaacgg      4020
     tttccactag cagctcaagc attggaaacg gacgtctaca tggacgatgt catttctgga      4080
     gcagatgacg tcgcaaccgc taccgaattg agggcacaac tggacagttt gctgggttcg      4140
     ggaggtttca agctacggaa gtgggcgtcc aacgagccat cggtactacg tggggtagca      4200
     cgggagaatc tagcacttcc tgacgagatc gattgggatc aagaggcgtc agtcaacact      4260
     ttgggtctta aatggctgcc caaaactgat tgcttcaggt tcaagttcaa aaatccagcg      4320
     gtgacgccgg gacaacctct aactaagcag ctgattttgt ccatcatcgc aaccttgttt      4380
     gatcccttgg gactcctggg cgcatctctg gttctgctga agatgttcat gcaaaaactg      4440
     tggacgttgc agcgagtgga tggcactcgg tacgattgga aggatccatt gcctcctacg      4500
     gtgggtgagg aatggcggaa gctaagtcaa catctaggcg tactcaacaa catccggatt      4560
     ccgagatgta cggtaatcaa gggagcagtc gacatccaaa ttcactgcta cacggatgcc      4620
     tcggagaagg cgtacggggc atgtgtctat attcggtcca agaatgtaga gcggaagcta      4680
     gcaaggcggc tactaacatc caaatcaaaa gtcgcacctc tcaaacaaca acctctacct      4740
     cgcctggagc tcaatggatc ggatctgggt gcagatttgg tagagtgggt cattcgagtc      4800
     ttgggcaaac ggtttccagt tttttactgg acggactcga cttgcgttct tctttggctc      4860
     aagaaaccac caagctactg gcagacctac gtcggaaaca gggttgctag aattcaacgg      4920
     attacggagg aacttggtgc tgtttggaac cacataccag gtgtcagcaa cccagctgat      4980
     ctcatctcac gtggtgttcc accggaagaa ctagaaggta atgagatgtg ggaggaaggt      5040
     cctgattggg acgatgagga gccaagcagt tggccagcgc agcctgatct gtcaggagag      5100
     gaagcaccag aaaggcgacg tgtcgtggtg gcatgcgttg caacagtcga gttcatcgac      5160
     attctgctct caagattctc ctcttacatc tcactaattc gagctgtggc cctggcgcga      5220
     cggttcagcg aagcaaacgt atggatacgt cacactgaag gagctgaggg aagcggaagg      5280
     agtcatcgtc cgattagttc aaagaaccac atttgctgag gaaatcgaag atctgttagc      5340
     tgagaaatca gtctctgctc attcacgttt acgctggttc aacccacaca tcgacgaagc      5400
     tggtgtgctt cgagttggag gacgtttgca acactcgaag gaaccgccgg ggaggaaaca      5460
     ccctatggtt ctcccggcaa agcacaggtt tacagaactt cttttcaaat actaccacgt      5520
     gttactgctg cacggtgggc ccacactcgt gctcacatca gttcagtatt ggccattagg      5580
     tggcaaggac cttgtgcgac tggtcattca taaatgcaag aaatgttacc tagcaaaacc      5640
     aacttctatt cagcagcaga tgggaaatct gcccaaggcg agggtgacag tgtcacgacc      5700
     tttctctcaa accggagtgg actattttgg tccggtgtac gtgaaggctg gtcgagggcg      5760
     tcaaccaacg aaggcgtacg tggcactctt cgtgtgcatg gctacaaagg cagtgcacat      5820
     ggaacttgtc accgatctgt ctacggaatg ctttctacaa gcacttcgta gattcatttc      5880
     tcggcgaaac cgtccaactg atatctacag tgacaacggt acaaatttcg tcggggctaa      5940
     aaatgtactg gagcaactgt tgaagcagct gaaggatgtc tcacatcacg agaagatcgc      6000
     aagggtttgc gaactcgaag gcatccgttg gcactttaac ccacccagtg caccacattt      6060
     tggaggcctg tgggaggcag cggtgcggtc ggccaagcat cacctcctgc gagttctcgg      6120
     cgagaattca gcatcgtttg aggactacaa cacactactg acgcaggttg aagcctgcat      6180
     gaattcaagg ccgcttactg cactctccaa cgatcctaca gacctcgaac cacttacacc      6240
     tggtcatttt ctgaccgggg catcgctgca agccttgccg gaacctgatt acagtcacat      6300
     ccctgggaat cgactgaaca ggtggcagat ggtacagcag caaacgcaga acttctggaa      6360
     acgctggcga tcggagtacc ttacgcaact acagagcaga acgaagaact ggcagcatcc      6420
     taagaaagtg gaggtgggca agctggtcgt catcgttgac aacaaccaac ccccaatgcg      6480
     gtggaaaatg ggtcgtatcc atgagctgca tcctggtgaa gatggtgttg tgcgcgtcgt      6540
     gacggtcaaa acagcaacaa atctccttca acgtccagtt gccaaacttt gcatcctgcc      6600
     atcccaagaa gaagacgaag aagaatcttc agctcagcca gaagcaacag cggttgagga      6660
     gtagtgtcca atcagtcgag cgtcgagagg gtttctgttt ctttattttc agaagtgttc      6720
     gagcaacttc agggtgggtg cgga                                             6744
//
ID   BEL-14_CQ-LTR repbase;    DNA;    INV; 562 BP.
XX
AC   AAWU01030126;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_CQ_;
KW   BEL-14_CQ-I; BEL-14_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-562
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 182-182 (2011).
XX
DR   Genome; AAWU01030126; Positions   18245   18806.
XX
SQ   Sequence 562 BP; 139 A; 147 C; 150 G; 126 T; 0 other;
     tgtctgagtg cgacgaagca cgcagccact gaccaggggt cagtcgattg gagccattag        60
     ccgaggttac ttcccatctc ttctaatcac cttggcaacg ggagcgacca ttgggagcga       120
     ctgggagcga ctgagagcga tctgcgaacg atcgagaggg cgatcgagac tacgagcgag       180
     caactgatcg gagctgtagt tcagttccgc gccgaccata cccgcagtcg ggcctcaaag       240
     ggaggacccc cgttcaattt ctatttgtac ctagttataa gaagaaatat agatgttaat       300
     gtagtctagt gtaataaaaa agtgtttttt gtacaaagtt gtgcgtttaa tttatttaac       360
     cgggttgaaa ctgagcccat cggtgctcct gctggccgcg catcggccga acctgtttcc       420
     tgcccaatcc ggccacacac ggcggaatta tcgaggtttt tcacccggcc gaggaatcac       480
     caacgcacta aacgtccgcc atcgccgcca acggcgatcc actctgcgct atcgaagaag       540
     gtgagtttgg aggaccacta ca                                                562
//
ID   BEL-14_DAn-I repbase;    DNA;    INV; 6322 BP.
XX
AC   AAPP01019522;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DAn_;
KW   BEL-14_DAn-LTR; BEL-14_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6322
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019522; Positions  210467  204146.
XX
CC   Positions [5368-5943] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1135..6297
FT                 /product="BEL-14_DAn-I_1p"
FT                 /translation="MESTKQKLNSTTLIDLKKRLNVKVKSIRRLEERLEDG
FT                 SLPLNKTELECRLQVLDEAISKANELQDQIEQIDEMDDFGAELEELGITTK
FT                 ARIMSLCNALNSAEDSRSATAISAAPTRARLPSLALPKFSGNYSDFKNFIS
FT                 LFETLVDKDVNIPVIEKFNHLISCLSGEALGTVKAFQVTESNYAKAIASLK
FT                 RVYDNECLIFANQIRQLFSLPKISQPSASSLRGLIDTVSSIYGSLLSIGDD
FT                 TKIANSMIIHLVLSRVDPVTKQKWEESLDYEELPLWSDFEKILNRRYQHLS
FT                 AEETGKPKQERTGFGKQLNRTSLACSSTNAKPACSYCNANNHFLAQCSPFA
FT                 RLAVMQRFEFVKSASLCLNCLRKGHTVANCKSTRCQICSRSHHKLLHRFTV
FT                 TENSLALPPPTQNPPPELTNDGPSTSHALHASSVERVLLATSIVSVRTKNG
FT                 EHILARALLDSGSQMNFITEDLAQRLQIRREESCINLLGIGQTNSQVKKKI
FT                 HTVVKSRVNGSEFPFDFWVLKTISGYHPDQSVNVKDWTLPKNLPLADPYFY
FT                 KPQRIDMLIGAESFFELLSVGQIKQGPNHPILQKTLLGWIVSGKYLANSST
FT                 PPQPVSSLNCQEEVLESIDKNLKKFWSLEEVPSSKKMLSPEQELCEEHYRK
FT                 TTRILPSGRFEVKLPFKSDPSVLGNSFEIAKRRFLSLERRLSRDPNLKKMY
FT                 LEFMEEYESLGHMSPASNDVLASPHYVIPHQCVLRPQSTTTKLRVVFDASC
FT                 KTSTQKCLNELLMVGPTIQEELYSTLLRFRLNKFALVADIKKMYRQVMVNE
FT                 ADRRYQLIVWRKDPSESLKLCKLNTVTYGTAPAPFLAIRCLKRLSESAKNT
FT                 FPRAAKVIGSDFYVDDMLTGAGCVEELKTIKSEVTQVLQNAGFELSKWFSN
FT                 SPEVTASESTVKPITLSDSELTKTLGIVWVPKDDVFKFEIDMSVMGQRATK
FT                 RNILSVTSKLFDPLGLLSPILIKGKILLQELWLNKLDWDESIPLHLETAWN
FT                 KIQLALSQLEEISIPRFVMSEPMSPIEIHAFSDASMRAYGACVYIRCKSAE
FT                 GSKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLCRKIKPLIKAPIERSV
FT                 YWSDSEVCLHWIRSHPSSLSTFVSNRVAEIQEWSEDSTWRHVPTKQNPADI
FT                 VSRGGDVKETIESIWFTGPSFLTEPEDKWPTSPRFDPSPEILQMEAKKSAV
FT                 GLTAMVSTSYLLEVIEGFSSHLKLLRVFVYMVRFIKKCKKLVVPSDNVPSP
FT                 VEYRDAFNKIVQIVQEHEYQEEIKNVRKNLVVSPSLQKLSPFVHETSQAGL
FT                 TFSLLRVGGRLANAPISYDAKFPVLLTKRSQFVQSYVRYLHESNFHVGPRA
FT                 LVSLLRQRVWIVNAQEVCSQIVRSCIRCFKCKPHLMTQIMGDLPLDRVRAL
FT                 RPFSICGVDFCGPIETTLKIRGRPPYKSYIALFVCFSSKAVHLEVVSDLST
FT                 DSFLLAFQRFVGRRGCPQTVHCDNATNFVGASRHFAALRHQIESEADELRQ
FT                 YASKKGCVFAFIPPRAPHMGGLWEAGVKSAKNLLLRAVGSAKLTAEELQTV
FT                 LVGVEAVLNSRPLGALSQDPSDGEALTPGHLLTGGPLIAPPAPRTPDQQGL
FT                 TCLRRWRLVSSIKQMFWQRWSREYVLGLQARSQWQREQEDARKGDLVLVAE
FT                 DDQPPQQWITARVVETHAGADGRVRVADVRTSRGALFRRAVHKLARLPIVE
FT                 A"
XX
SQ   Sequence 6322 BP; 1856 A; 1338 C; 1412 G; 1716 T; 0 other;
     ttttggcgcc cccgggtgga ctgtagtaaa taattaaata taaaagcaac aaaaaatagt        60
     gacagtgaca cataaaatat atataacaat atatataaca tatatatatt ccaaacaaaa       120
     agagttgctc gcgacggttg tgccagtgaa ttcaaaacac aaattgaaga attctccgcg       180
     tcgcgaaaca aacttctaca tagctgctac tggaaggatt cgtcgtcccc atgcactgca       240
     cctgcatcaa ttgtgaaagg aaagtggccg caggattaaa gggtccgaaa gcagaaaccc       300
     aggtatttgt gcaaaaaatt gaaagttgag ataagacaaa ttaaaatccg tcttgtgctg       360
     gaatattgca ccctcctttc aattcttggc gcatacgtac gtagaaaaaa tagtagagca       420
     aaaataaata acaacatata taaaaattct aaaattttaa ttataaatat atgtgctaac       480
     ctaaatgtac tgcctgtgga tgaaataaaa aagagaatat tgatattatt tgcaatcact       540
     gtcgccccct acccctcgtt ctcgaattta caaatcttcc aaataaataa taaagtgcag       600
     ccaaaaatta ttttaattat ttcagataaa ataaaggtgc ttatatattt ggtttacata       660
     catacaaata gatgcagcga taatattctc gttttcgttt cccaccgtta tccgctgctg       720
     tatgtatgta tgtatatgca ctttttggcg cgtatagttt accggtctgc caagtgacgc       780
     gctcccctac aatttggtca agcatattgg tttcggtgtc attggcgacc aactattttt       840
     ttggatactc tgtgcctcga ctatcaataa ttcgttatca attaattaat caatttagat       900
     ttggttaaat ttaataaatt atttattata tttaaataag attaattaat tattttcgtt       960
     ttcgcatttt cttgttgttg aattaaattc aataaatttt taaataaatt ttagaaaaat      1020
     ttaataaatt tttaatatta atattttaaa attaataaaa aattttaaat aaattattaa      1080
     atcttaaatt tgcatcgttt tcgtttttgt attgaaaaaa caaatttttt taaaatggaa      1140
     agtactaaac aaaaacttaa ttccacgact cttattgact taaaaaaaag attaaatgtc      1200
     aaagttaaaa gcattcgccg gttggaggaa cgtttggaag atggatcact tcctctaaac      1260
     aaaaccgagc tagaatgcag gcttcaggtt ttagatgagg caatttctaa agcaaatgag      1320
     ttgcaagacc agatcgagca aatcgatgaa atggatgatt tcggagccga gttggaagaa      1380
     ttaggaataa ctacgaaggc aaggattatg tccttatgta atgccttgaa ttcagctgaa      1440
     gactcccgtt cagctactgc aatttctgca gccccaactc gagctcgact tcctagtttg      1500
     gcattgccaa aattcagtgg aaattattcg gatttcaaaa atttcataag tcttttcgag      1560
     acattagttg acaaagatgt gaacattcca gttatcgaga aatttaatca tttaatttct      1620
     tgcctctctg gtgaagcctt aggaactgtc aaggcattcc aggtcaccga gagtaattac      1680
     gccaaagcta tcgctagttt aaaaagagtt tatgataacg aatgtctcat ctttgcgaac      1740
     caaatacgtc aactgttcag ccttccgaaa atttcccagc cgtctgcgtc gtccttgagg      1800
     ggtctcatcg acactgtatc atcaatttat ggatcactat tatccatagg agatgatact      1860
     aaaattgcaa actcaatgat tattcattta gttttgagta gagtggatcc agtgaccaag      1920
     caaaaatggg aagagtcact ggattatgag gaattgccgc tgtggtccga tttcgaaaaa      1980
     atactaaatc gtagatacca gcatctgtcc gctgaagaga ctggcaaacc aaaacaagaa      2040
     agaactgggt tcggcaagca actaaataga acttcgttgg cttgttcttc taccaacgcc      2100
     aaaccagctt gcagttattg taacgcgaac aaccattttt tggcccagtg tagtccgttc      2160
     gctcgccttg ctgtaatgca aaggtttgag tttgttaagt cagcctccct atgtttgaat      2220
     tgtctgcgaa aaggtcacac ggtagcgaat tgtaaatcga ccaggtgcca aatctgttca      2280
     agatcgcacc ataaacttct gcaccgattt acagtgaccg aaaatagctt agcattacca      2340
     ccacccacac aaaatcctcc tccagagtta acgaatgatg gcccttctac ttcacatgct      2400
     ttgcatgcgt cgtctgtaga aagggttttg ttagcaacgt cgatcgtaag cgttcgcaca      2460
     aaaaatggtg agcacatctt ggcccgagca ttacttgact cagggtcaca aatgaatttt      2520
     attacagaag atcttgctca acgcttacag atccgtaggg aggaatcgtg catcaacttg      2580
     cttggaattg gtcaaactaa ttcacaagtt aagaaaaaga tacacaccgt ggtgaagtcg      2640
     agagtcaatg gtagcgagtt tccgttcgac ttttgggttt tgaaaaccat ttcaggctat      2700
     caccctgatc agtcagtgaa cgtaaaagat tggaccctac caaagaactt gccgttagca      2760
     gacccatatt tctacaaacc tcagcggata gatatgctaa ttggagctga gtcatttttc      2820
     gaattgttgt ccgttggcca aataaaacaa ggtccgaacc atcccatcct tcaaaaaact      2880
     ctccttgggt ggatagtgtc gggaaaatat ctggcaaatt cctcaactcc tccacagcca      2940
     gtctctagtc tgaattgcca agaggaagta ttagagtcaa tagacaaaaa cttgaaaaaa      3000
     ttctggtcgt tggaagaagt tccttcttct aaaaagatgt tgtcgccaga acaagagcta      3060
     tgtgaggaac attatcggaa gactacaaga atactgcctt caggtcgatt tgaagttaaa      3120
     cttccattta agtcggatcc aagcgttttg ggcaattcat tcgagatagc caaacgccga      3180
     ttcctgtcgc tcgagagaag attatctcga gatccgaact taaagaaaat gtatttggaa      3240
     tttatggaag aatacgaatc cctaggccat atgtcccctg caagcaatga cgttcttgct      3300
     tctccacact acgtcatacc ccaccagtgt gtcttgcggc cgcaaagtac aacgaccaaa      3360
     cttagagtcg ttttcgatgc gtcctgcaag acatccacac aaaagtgttt aaatgagttg      3420
     ttgatggtgg gtccaacaat tcaggaagag ctttactcaa ctcttcttag atttcggcta      3480
     aacaaattcg ctctggtagc cgacataaaa aagatgtatc gtcaagtgat ggtaaatgaa      3540
     gcagatcgac gataccagtt gatagtgtgg agaaaagacc cgtctgagtc cttgaaattg      3600
     tgcaagctca acaccgttac gtatggcact gcaccagccc cattcctggc cataaggtgt      3660
     ttgaagaggt tgagtgaatc cgcgaaaaat acattccctc gagctgctaa agttattggg      3720
     tctgactttt acgtcgacga catgttaacg ggtgctggtt gcgtggagga gctaaagaca      3780
     attaagtctg aagtaactca ggttcttcaa aacgctgggt ttgaattgag caagtggttt      3840
     tcaaactcgc ctgaagttac tgcatccgag agcacggtta agccaataac actttcggac      3900
     tcagagctga caaaaacatt aggaatcgtt tgggttccta aagatgatgt atttaaattc      3960
     gaaattgata tgtcagtcat gggtcaaagg gcgactaagc ggaatattct ttcggtgacg      4020
     tcaaagcttt tcgaccctct tggcttatta agcccgatcc ttattaaagg aaagatcctg      4080
     ttacaggaac tttggctcaa taagctagat tgggatgagt ccattccact gcacttggaa      4140
     accgcatgga acaagattca gcttgccttg tcacagttag aagagatctc aataccgaga      4200
     tttgtgatga gtgagccaat gtcaccaatt gaaattcatg ccttttctga cgcatcgatg      4260
     agagcctatg gagcctgcgt ctatatccgt tgcaaatctg cagaaggtag taaagtctca      4320
     ttgttgacag caaagtcgaa agtagcgccg ctcaagacaa agacgctccc ccgtcttgag      4380
     ttatgtgccg ctcaccttct cgcggacctc tgtcgcaaaa taaaacctct tatcaaagca      4440
     ccgatcgaac gaagtgtata ttggtcagat tcggaagttt gtcttcattg gattcgttcc      4500
     catccatcgt cgttgtcaac gttcgtatca aatagagttg ctgagattca agagtggtca      4560
     gaggatagca cgtggcggca tgtaccaact aaacagaacc cggcagatat tgtgtcaaga      4620
     ggtggagacg taaaggaaac gatagaatca atttggttca caggtccatc gtttttaacg      4680
     gagccggaag ataagtggcc aacgagccct cggtttgatc cgtcaccaga gattttgcag      4740
     atggaagcaa agaagagtgc ggtcggactg actgcaatgg tctctacctc atatttgttg      4800
     gaagtgatag aaggattttc ctctcactta aaactgctgc gagtgttcgt ttacatggtc      4860
     cgctttataa agaaatgtaa aaaattagta gttccttctg ataatgtacc ttcccctgtc      4920
     gaatatcgag acgcgtttaa taaaattgtc cagatagtcc aagagcacga gtaccaagag      4980
     gaaattaaaa atgttagaaa aaatcttgtt gttagcccaa gcctacagaa gctaagtccg      5040
     tttgttcatg aaacctctca ggctgggctt accttttcgt tgttgcgggt cggggggcga      5100
     ctagctaatg ctcctatttc gtacgatgcc aagtttccag tattgttgac gaagcgctct      5160
     caatttgttc agagctacgt ccgatacttg cacgagtcga attttcatgt gggtccacga      5220
     gcactagtga gtctcttgcg acagcgcgtt tggatagtaa acgcgcagga agtctgcagt      5280
     cagatagtgc ggtcatgcat acgatgtttt aaatgcaagc ctcatctgat gactcaaatc      5340
     atgggagatt tacccctaga tcgagttcgt gctctccgcc cattttccat atgtggcgtg      5400
     gatttctgtg gccctattga gacgaccttg aaaattcgtg gtaggccacc atacaagtcc      5460
     tacattgccc tgtttgtttg tttttcgtct aaagcagtac atttagaagt agtttccgat      5520
     ctgtcaactg attcctttct attggctttt caaaggttcg ttgggcgccg aggatgtccg      5580
     cagaccgtgc actgcgacaa cgcgacgaac ttcgtcggag cgagtcgcca cttcgcggca      5640
     ctgcggcacc agatcgagag cgaagcggac gagctgcggc aatacgcatc aaaaaaagga      5700
     tgcgtatttg cgttcatacc gccgcgggct ccgcacatgg gcggactatg ggaggcaggt      5760
     gtgaagtctg caaagaacct actcctacga gcggtgggca gcgcgaagtt gaccgcagag      5820
     gagctgcaga ccgtcctcgt tggagtcgag gccgtcctga actcgaggcc cctgggcgcc      5880
     ctcagtcagg acccaagcga cggcgaggcg ctgactcccg ggcacctgtt gacaggcggg      5940
     ccgctcatcg ccccaccagc accgcggacc ccggaccagc agggtctaac gtgcttgcgg      6000
     cgatggcggc ttgtctcgtc aatcaagcaa atgttttggc agcgttggtc ccgggagtac      6060
     gtcttgggcc tacaggcgcg gtcgcagtgg cagcgggagc aggaggacgc caggaagggc      6120
     gatctggtcc tggtcgccga ggacgaccag ccgccccagc agtggatcac cgccagggtc      6180
     gtcgagactc acgccggcgc ggacggaagg gtcagggtcg ccgacgtcag gacgagtaga      6240
     ggagcattgt ttcggagagc agtccataag ctggcaaggc tgccaatagt tgaagcctaa      6300
     ggaaggcctt caacggggcc gg                                               6322
//
ID   BEL-14_DAn-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   AAPP01019522;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DAn_;
KW   BEL-14_DAn-LTR; BEL-14_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-309
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019522; Positions  204145  203837.
XX
SQ   Sequence 309 BP; 86 A; 53 C; 63 G; 107 T; 0 other;
     tgtataatta gatgtagata ataagtggaa ttgtatgaag tatatagtta gtttagtata        60
     agttagttta gggcggagcg ggagcgcaag tgaagctctc acttgcgctc tcccatgaat       120
     tcgccccgct tcgccgcact agataagcta ggcttaaggt tttgttaata tgaatataac       180
     cgaatttata acgtcgaaga gtgcacgcat ttttgttttc ggtcgttttt ttcgcatttt       240
     aattattact acagccacca attttttcct ttcgtttttc gcgacgagat aaaataatct       300
     cgataaaca                                                               309
//
ID   BEL-14_DAzt-I repbase;    DNA;    INV; 7680 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7680
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 777-777 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1308..6656
FT                 /product="BEL-14_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSDREAENLLTVPGSLPLSPSVEEAPSASEHGYSKG
FT                 RKSPVSRTTRTVTQKISESKKMALDDFIAASDRLNKFEAKISAPSSAEVSL
FT                 FTLKIRLEEVKTLWDKVRVECENCTKALNQAEPDGETIQSMSAKYDHCYAV
FT                 YERCASALQERIENGTNPAPVSVPNFQQRGCRLPPLETEVFSGDYLKWPTF
FT                 RDLFTAIYVNNPNLSQVEKLYHLSHKTRGEAKAIVEKAPLTNEGFESAWTA
FT                 LKERFENKRTLVNSQLKLLFGFPPIQKESGAALKGLQSAVQGCLTALEHSD
FT                 VSIDNRFADGVLVFLVSSKLPQITLSLWEQSLPSKSEIPTWSAMNKFLGER
FT                 HLSLEAIEDAGTSMFLLSRSERKETSSKKVNSFEAKVSVKTRTCTLCSKEP
FT                 HPVRQCPRFLKMTAYDRSNYIKQQKLCMNCFARGHQIKDCTSQHNCFTCKG
FT                 RHHTLLHRGHPPPEPSPSVPSNPNPNPSPIIQSTSSSNVQNYYTASTQGVL
FT                 LGTAVINICHLGTSYKARALIDSGSEATFISERLFRIIKLPFNPVQVQVSG
FT                 LNQAIAARPQKICHFQIGSPAKPRIHIETSAFVLPNVAGTLPSYPISRDIL
FT                 KDLPNIPLADPSFHKSSQIDVLLGADILPSILLGGSLPNICGSLLGQETIF
FT                 GWILTGPVADSTRTSISSFATRINVSSEQRLEKLLTKFWEVEDLPAKLVEE
FT                 SSESVCEDNFMRTTRRDPKGRYMVSLPFRNPEGINLGHSRSIALAQFLKNE
FT                 GRLNRNGPLKEQYDRVLQEYLDLGHMRQVAPSNDSDNFYLPHHAVQKPDST
FT                 TTKLRVVFNASSPSSNGKSLNDILYPGPVLQSDLTIQILKWRFYQYVFNAD
FT                 ITKMYRQITLDPSHTRFQRILFRNVNGELCDYELTTVTFGVNCAPFLAIRV
FT                 LKELAKDVLKQFPLASQIISNSMYVDDVLAGAHTIRDAITAIKELRAALEG
FT                 AGFPLRKWTSNAKQVLVEIPKEHLLCADFLEMEDASSAKTLGIRWQADSDN
FT                 FLFKPSEVTLRSSYTKREVLSQISKLFDPAGWLAPFIVRAKIFMQEIWLKE
FT                 LEWDDSLPTDLLKRWQEFLLSYPALHDISIPRWVQYHPRVNLQFHGFCDAS
FT                 QRAFGAAIYVRVESEQQVSVHLLSAKTRVAPVKTVSLPRLELCGAVLLAEL
FT                 SSSLLPQLSLDSYQCFYWTDSTIVLAWLNKPPCRWTTFVANRVTKITQSVS
FT                 KGTWSHVRSEHNPADLASRGVSSRELASSNLWWHGPDWLTLARDQWPIQAE
FT                 SPHTTELEQRTVKCNVSKSSPESSIVDRFSEFGKAIRVLAYVFRFLQRCRK
FT                 PDTQFPVELSSRELSEAQERMIILTQRAEYAKEVQRLLNKQPLSASSCINN
FT                 LNPFLDQKGVIRACGRVRTSESLSYDEKHPIILPYASGFTHLLVRFTHRIS
FT                 MHGGNQLVIRLIRSKYWIPKLRVLVKATINSCRVCVVHRRKLQAQLMGDLP
FT                 RERTTFSRPFTRTGVDFAGPFDIKTYSGRACRITKGYVCVFVCFSTRAIHL
FT                 EATSDLTTETFLAAFNRFVARRGCPQQMVSDNGKTFVGAAKALSHDFLVAT
FT                 RTRIIAAYPQQHLTWRFNPPSAPHMGGLWEAGVKSFKTLFYKSTSTYKYTF
FT                 EELSTLLSKIEACLNSRPISPMSEDPTDLLALSPGHFLVGGPLISIEEPEI
FT                 REDAGSIINRWQRLKAQNQQFCLRWKEEYLKELHKRHKWQLPTRNLQAGDM
FT                 VVVKEDNLPLNEWRLGRIERTYPGSDGMVRVVDVLTVRGTIKRPVAKLILL
FT                 PIDNSVHVQVSN"
FT   CDS           6688..7602
FT                 /product="BEL-14_DAzt-I_2p"
FT                 /note="retropepsin."
FT                 /translation="MIQSLIFTFFLFPSMTPSQRPVNRSHPRGTNSFRCRV
FT                 CRGVHALRKCQRFLQLKVEKRLRAVLINKYCHNCLAHQHSGRSCRSGDTCR
FT                 VCGQNHHTLLHMGGKNRSSRPKPRSLPSRASSPASRASSPPARSTSRSAAP
FT                 STTLASLLQSRSTCILPTAWVVIDTGHKTFEVGALIDPCSPTSRINASLAT
FT                 AFGLSVTRVGAEGACTAFIQSKNRSDVRLEVVLSVQPQLLIRTPERHVGDH
FT                 VKDHFANMVLADDNFHRPSTVSLVLGADLYHQIILPGVIPSTEGFPMAQNT
FT                 VFGWTLSGTCSTA"
XX
SQ   Sequence 7680 BP; 2107 A; 2037 C; 1653 G; 1883 T; 0 other;
     ttggtccttc gagccggatt tctaattgga tttttagaac ctctaaaatc acggatatca        60
     tccccccatc cactcgcccc agcttgttcc tgagaaactg ccagctaagt acctattcca       120
     attaaagtac gaaatctttt tggtaaaggc tctgtgtgtg aattgtgtaa aacaaaaacc       180
     aaaaaaaaaa gaaaagtgca agtgaaaagt agaaagggcg aagagggaaa gaaagaacgc       240
     cattttttcc atttgcatat gcatatgtac atgagagaac tctccaatat ttctccctcc       300
     aaaaaaaatc tccaagtgca gtgaacctcc aatatacata tgcatgtaca aaaattctcc       360
     aagtcgttcc cctccacgcc tacactcgaa cttcgaaccg agtgcatcaa accgatctca       420
     tcgagcctcg aacttcgaac atagtgacat ccatacatat ctacatacat acctccgctt       480
     ttttttaatc caaattcaca aagtttttcc catccaaaaa gtcgcacaat ttacatttaa       540
     aaacagagcc ttcccaaaca agaaaaattt aaaatttacg ttcattcctt tgtgcaatcc       600
     ataattcata ttacatatcc atatacataa atacatacat acactgtagt taatgtttgc       660
     acttgtcttt ccctactaac acaaaagagt gatatccaaa agtgttaaac tattaatacg       720
     catatacata cgaacacata tccgtacata tttatttcat aaactccata acgagcgcgt       780
     ccaacgcatt cctaagcata tatacgtcca tactgacata catatgtaca tacacgacag       840
     tacgaacata tgagtgcagc tgttgcgtgt tcctctttgt gcattggcgt gtgataccca       900
     gcatagagcg ggtatatgct atttttgaaa aagttcggca cgtcgaacat tttttgcaat       960
     attaatatct acctaatttg tttgaagtag tgaattgaac attactgcgc attccattcc      1020
     cgcattccaa cgatatagaa aataaagaaa taacataaca aaaaaaattc cgatacgata      1080
     ttattattta tattcacata tttttttttc ctggttgcta aattctacaa ggtaaccact      1140
     ccatctgtac gtgttccatt ccaccattcc aagattttct agtattcaat acatacttat      1200
     tccgggtgtg caaagcaaac cttatagatt gtggctggcc ccgtttgaat tctccattat      1260
     aattccatcg ttcctctact gcattcaccg cgtttaacca gactattatg tcaagtgatc      1320
     gcgaggcaga gaatcttctc acagttccag gctcattacc tctatcaccc tccgtagaag      1380
     aagccccttc ggcttcggaa cacgggtatt ccaaaggacg aaaaagtcct gtttcacgta      1440
     ccactcgtac cgttacacaa aagatctccg agtcaaaaaa aatggctttg gatgatttta      1500
     tagctgcatc cgaccgtctc aataaattcg aggcaaaaat cagcgctcca tcctccgcag      1560
     aggtctcgct cttcacgctc aaaattcgcc tggaagaggt aaagacctta tgggacaaag      1620
     tgcgagtgga atgtgagaac tgcaccaagg ctctcaatca ggctgaacct gatggtgaga      1680
     cgatccaatc catgagcgca aaatacgatc actgctatgc agtgtatgaa agatgcgcgt      1740
     ccgctctgca ggagcgaatc gagaacggaa cgaacccagc tccggtatca gtaccgaatt      1800
     tccagcaacg aggttgcagg ctcccacccc ttgaaaccga ggtgttttcc ggagattatc      1860
     taaaatggcc cactttccgg gacctattca ctgcaatcta cgtaaacaat ccgaatttat      1920
     cgcaggtgga aaagctgtat cacctaagcc acaagactcg cggggaagca aaggctatcg      1980
     tagaaaaggc tccgctcaca aatgaggggt ttgaatccgc atggaccgcc ctcaaagagc      2040
     gtttcgagaa caaacgaacg ctggtcaata gccagctgaa gctccttttc ggtttccccc      2100
     ctattcaaaa agagtccgga gctgctctta aaggtctcca gagtgcggtc caaggatgcc      2160
     taacggccct tgaacactcc gacgtctcca ttgataaccg cttcgcggac ggcgtgctgg      2220
     tgttcctagt ctcctctaag ttgcctcaga taaccttatc gctgtgggaa caatctctcc      2280
     ccagcaaaag cgaaattccg acgtggtcag caatgaacaa attccttggt gagcgacatc      2340
     tctccctcga agcgattgag gatgcaggta cctccatgtt tttgctttcc agatctgaaa      2400
     ggaaagaaac ctcttccaag aaggttaatt cctttgaggc aaaggtcagc gtcaaaacgc      2460
     gaacatgcac cctttgctca aaggaacctc atcccgtgcg tcaatgtcca cgctttttaa      2520
     aaatgactgc ttatgatagg tccaactaca taaagcagca aaagttatgt atgaactgtt      2580
     ttgcgagggg gcaccaaatt aaagactgca ccagtcagca taactgcttc acgtgcaagg      2640
     ggcgccacca cacacttctg caccgtggtc acccccctcc agagccctct ccatcagttc      2700
     cctcgaatcc aaatccaaat ccaagtccaa taatacagtc cacttcatcc tctaatgtcc      2760
     aaaactacta cacagcaagc acacagggtg ttctgctagg cacggctgtt ataaatatat      2820
     gccatttggg cactagctat aaagcacgtg cattgatcga ttctgggtcg gaagcaacgt      2880
     tcatctcaga acgcttgttc agaatcatca aacttccttt caatccagtt caagtgcaag      2940
     tatcgggctt gaaccaagcg atagctgcaa gacctcagaa gatatgccac ttccaaatag      3000
     gctccccagc aaagccgaga atacacatag aaacctcagc ctttgttctt ccaaatgtgg      3060
     caggcacctt accctcctat ccaatttctc gagatattct aaaggacctg ccaaatattc      3120
     ctctggctga cccttctttc cataagagct cgcagataga tgtactttta ggtgcagata      3180
     tccttccgtc cattttacta ggcggctccc tccccaatat ttgtggatca ctacttggcc      3240
     aggagaccat ctttggatgg attctcactg gacctgtagc cgattcgact cgcacctcaa      3300
     tctcctcctt tgcgacaagg ataaacgtca gctccgagca gcgtttagaa aaacttctaa      3360
     caaagttttg ggaggtggag gatcttccag ccaagctggt agaagagtct tctgagtctg      3420
     tctgtgaaga caatttcatg cgaaccaccc gtagagatcc aaaaggcaga tatatggtat      3480
     ccttaccttt tcggaatcct gaaggcatca acctaggtca ttcaagatca atcgcactgg      3540
     ctcaattcct taaaaacgaa ggtcgcttaa atcgaaacgg tccattaaaa gagcagtatg      3600
     atcgcgtcct ccaggagtac ttggacttag gtcatatgcg acaagtagct ccaagtaatg      3660
     attccgataa tttctatctg ccccatcatg ctgttcaaaa accggacagc accactacaa      3720
     agctacgggt agtttttaat gcctccagtc catcctcaaa tggcaagagt ctgaacgaca      3780
     ttctctatcc aggaccggtt cttcaatcag acctgacgat tcagattctg aaatggcggt      3840
     tctaccaata tgtctttaat gcggacatca caaaaatgta tcggcaaatt accctcgatc      3900
     cttcacacac aagattccaa aggattcttt tcagaaacgt aaatggcgag ctctgtgatt      3960
     atgagcttac cactgttacg tttggggtaa attgcgctcc attcttggcc attcgtgtgc      4020
     taaaagaact tgcgaaagat gtcctaaagc aattcccatt ggcaagtcaa atcatatcca      4080
     attcaatgta tgttgacgat gtacttgctg gggctcacac aatacgggat gcaattacag      4140
     cgataaagga acttcgtgct gctctagagg gtgcggggtt tcctttaagg aaatggactt      4200
     ccaatgcgaa gcaagtcctg gttgagattc cgaaggagca cttactatgt gccgatttcc      4260
     ttgaaatgga ggacgctagt tcagcaaaga cgttgggtat ccgatggcaa gcggatagtg      4320
     ataactttct ttttaaacca tccgaggtaa ccttaaggtc ctcttacact aaaagggaag      4380
     tcctctccca aatctctaaa ctattcgatc cagcaggatg gctcgctcca ttcatagtcc      4440
     gagcgaaaat atttatgcaa gaaatctggc ttaaagagct agagtgggat gactctttgc      4500
     ccacagacct cctgaagaga tggcaggaat ttctccttag ctatcctgct ctccatgata      4560
     ttagtattcc aagatgggtg cagtatcacc ccagagtaaa tttgcagttc cacggctttt      4620
     gtgatgcatc ccagcgcgct ttcggtgcag ccatttacgt tcgtgtagaa agtgaacagc      4680
     aggtctctgt ccatctactc tcggcaaaga ccagagtcgc tccggtgaag accgtgtcct      4740
     taccacgttt ggaattatgc ggggcggttc tccttgctga actatcctcg tctctccttc      4800
     cacaactgtc ccttgatagc taccaatgct tttattggac agactccacc atcgtgttag      4860
     cgtggctaaa caagccacca tgcagatgga cgacatttgt cgctaaccga gtgactaaga      4920
     tcacacagtc cgtcagcaag ggaacatggt ctcacgtcag atcggagcac aaccctgctg      4980
     atctggctag cagaggggtt tcatcccgag aattggctag cagcaatctg tggtggcatg      5040
     ggccggactg gctaacattg gcaagggacc aatggccaat ccaagcagaa tctccgcaca      5100
     ccacagagtt ggagcaacgc acagtgaagt gcaacgtatc caagtcttca ccggaatcca      5160
     gtatcgtaga ccgcttctcc gaattcggga aggctattcg agtcttagcc tacgtttttc      5220
     gttttctcca aaggtgtcgg aaacctgaca ctcaatttcc agtcgagctc agtagccgtg      5280
     aactatccga ggcgcaagag cgtatgatca tccttactca acgcgctgag tacgcaaaag      5340
     aggttcagcg tttgctaaat aagcaaccac tttcagcgtc cagctgcatc aacaacttga      5400
     acccatttct ggaccaaaaa ggggtcatcc gagcatgcgg tcgtgtgagg acatccgagt      5460
     ccctaagtta tgacgaaaaa cacccgatca ttctccccta cgcaagcggg ttcacacatc      5520
     tacttgtacg gttcactcat cggatctcaa tgcatggtgg aaaccagctt gtgattcggc      5580
     tcatccgatc caaatactgg atcccgaagc tccgggtcct agtcaaagcg actatcaatt      5640
     cctgtcgagt gtgtgtagtc catcgacgca agttgcaagc ccagctcatg ggagacttgc      5700
     ccagggagag gaccacgttc tctcgtccat tcactcgaac gggggtcgac tttgcgggac      5760
     cattcgacat caagacctac agcgggcgag cttgccgcat cacaaaggga tatgtctgtg      5820
     tcttcgtgtg tttcagcacg agggcgatcc atctggaagc aacctcagac ctcacgaccg      5880
     aaacgttcct cgcagctttc aatcggttcg tggcgaggcg ggggtgccct cagcaaatgg      5940
     tttctgacaa tggaaagacg tttgtgggag ccgcaaaggc cctgtcccat gatttcctgg      6000
     tcgctacaag aacccgcatt atcgccgcat atcctcaaca acatctaacg tggcgtttca      6060
     atcctccaag cgcacctcac atggggggac tgtgggaagc gggagtgaaa agcttcaaga      6120
     cgcttttcta caagtccacg tcgacataca aatacacatt cgaagaattg tcgaccctcc      6180
     tctccaaaat cgaagcatgc ctgaactcgc ggccaatttc gcctatgtca gaagatccca      6240
     ctgacctgct agccctcagt ccaggccact tcctggttgg cggcccactg atttccattg      6300
     aggaacccga aatccgagag gacgcagggt caatcatcaa cagatggcag cgccttaagg      6360
     ctcaaaacca gcagttctgt ttgcgttgga aagaagaata ccttaaggag ttacacaaaa      6420
     ggcacaagtg gcaactccca acgcgaaacc tccaagcagg cgatatggtt gtcgtcaagg      6480
     aagacaacct accattaaat gaatggcgcc taggaagaat cgagcgcact tatcccggta      6540
     gcgatggcat ggtccgcgtg gtggacgttt tgacggtccg tggcaccatt aagcggccag      6600
     tcgcaaagct cattcttctt cctatagaca attctgtcca cgtccaagtg tccaactaac      6660
     ccatatgttc cttgtcgttc ggtgcatatg atccaatcac taatattcac gttctttctc      6720
     tttccaagta tgacacccag ccaacgtcca gtcaaccgca gccatccgcg gggaaccaac      6780
     agcttccgct gtcgggtctg ccgcggagtc cacgcattgc ggaaatgcca gcgtttcctg      6840
     cagctcaagg tggagaagcg actacgggca gtactaataa ataagtactg ccacaactgc      6900
     ctggcgcacc aacattccgg acgctcgtgc cgaagcggag acacatgtcg ggtatgcggg      6960
     cagaaccatc atacccttct ccacatggga ggaaagaacc gatcctcacg cccgaagccc      7020
     cgctcgctac catccagggc atcctcgcca gcatccaggg catcctcgcc accagcgaga      7080
     tcgacgtccc gatccgctgc tccctcgacg acgctggcat cgctcctgca gtccagaagc      7140
     acttgcattc ttccgacggc atgggtcgtg atcgacacag gccacaaaac cttcgaggtg      7200
     ggtgcactca tcgatccgtg cagcccaacc agtcgcatca acgcatcatt ggcaacggcc      7260
     ttcgggcttt ccgtcactcg cgttggtgcg gaaggcgcct gtaccgcctt catccaatcg      7320
     aagaacagga gcgatgtcag actggaggtt gtgctgagcg tgcagcctca gctcctgata      7380
     aggaccccag aacgacacgt gggcgaccat gtgaaggatc acttcgccaa catggtcttg      7440
     gcggacgaca atttccatcg gccgagcacc gtgtcattgg tgctgggggc agacttgtac      7500
     caccaaatca ttctgccagg agtgatcccc agcaccgaag gcttcccaat ggcgcagaac      7560
     acggtgttcg ggtggaccct ctcgggcaca tgcagtactg cataaatgca accggcattc      7620
     tctcccccct ttccggggca ctccacattt tgttgcaatt atattgcaag ggggggagga      7680
//
ID   BEL-14_DAzt-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-296
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 782-782 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 296 BP; 96 A; 84 C; 54 G; 62 T; 0 other;
     tgttcacgcc gaaaagcatg caccatgcgc ccaccaatcc tccaaccaac ggcaacatca        60
     actacaccaa aagcttatga gcaatgttgc agggcggcaa agcgggatgt tagttttaag       120
     cttcttgtgt ataagttagt tattgaaata aagtgaaaga gaccacacgc aattttgcta       180
     tttttttcgt cggcctacac ccgaccgatc acctgttaaa cgaagaagcc gaccccccac       240
     atatccacca cggacaaaac aaatcaaaca actggcagga gctcccccta caatca           296
//
ID   BEL-14_DEl-I repbase;    DNA;    INV; 6059 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6059
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 444-444 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(224..922,895..1140,1044..1406,1486..1716,
FT                 1614..1850,1823..2212,2143..2475,2432..3244,
FT                 3187..3555,3489..4028,3965..4819,4785..5030,
FT                 4865..5221,5151..5720,5627..5983)
FT                 /product="BEL-14_DEl-I_1p"
FT                 /note="DUF1759, reverse transcriptase, peptidase
FT                 A17 and integrase."
FT                 /translation="MPDGAGNQLAKEGKKDDSAGPSGNLRSNVKGTRDIAM
FT                 MEFIATSDRLSRYEAHIFTPSAIEPTSFTLKVRLDQIQSLWERVEKEFDLR
FT                 SRLVIQEGGGSSPSLQSKYDNCYSVYERCASKLSEQIAQISAXTALSRPNP
FT                 GPDFSSKGCNLPPCDTEVFDGDYLRWPTFRDPLTAIYVDNSLTKVEKXFHL
FT                 NAKTSGKAKAVVAKSPLTNDGFESAWGALVERFETNDFSSTASDKRLLVNS
FT                 QLKILFNLSXIGIESGSALKEVQTAIQGCLLALEHSEVSASNWDREAVFLC
FT                 SSKLPKIILPLWEQSLARKSEIPLGPRGGLSLLIQATKNHSPTMGAVISQK
FT                 VRDSIRTLLVTIIAMPGSSNYARRLPQYSHFCXLCLQSARSPFRHSHCPCV
FT                 SFRRKLPSPSPDDSGSEGTFISEGLANVLNSILNREDKSYRPYDCTSLATV
FT                 GWKSSTNTTDRSTLRELPNIQLADPLFFQPSQIDLLIGADILPSYFPQVLN
FT                 LTCVARYWAKKRFSGGFFVNRCGYSSVVLPSGSKPNLCGSLLGQETIFGWI
FT                 LTGPISLAKGKSVFSFTTKVPYNLSLLWRHCSQSFERWRISQVRLEVEDLP
FT                 GQVVKESDSFCEQNFVQTTSRSAEGKYVVSYPKAERVSLGHSRSFALAQFL
FT                 RNEYRLKKDAVLKNIYDSVIKKYLDLGHMKQVSSNTDSTNFYLPHHAVFKP
FT                 ESATTKVRVFSMLRVRRQMGTVARECHYKGTCLFNASSPSSNGNSLNDILY
FT                 PGPILQSDLTLQILKWRIFQFVFNADITKMYRQIGVTPSHTPFQRILFRND
FT                 QGDIADYELQTVTFGVNCAPFWPYAPYSSYPIVLLFGLTHPTAAIHDVEAQ
FT                 YPRASDIISNYMYVDDVLAGAHTKSEAILAISELRSALSSAGFPLRKWTSN
FT                 ERDLLKSLPKEHLLSVDFLEIEEVSTTKTLGVRWNATADEFYFVATQVELK
FT                 SKFSKREILSQIARLFDPAGWLSPFIIQAKILMQDIWLAKIGWDDFLPADL
FT                 LQRWHDFLRSHNFLQKVRVPRWIQFQPGAKVQVHGFCDASQKAFGAAIYVR
FT                 VQRGGIISSELLTAKTKVAPVKTVSLPRLELCGAVLLAELWAAARMAARAL
FT                 WSCSSGRTLGRSKNGLSKNAVSETDLEKKAARCHFACPIWDILDRFSDFNR
FT                 MLRVMAFVQRFINRCRRFRSTYPPDLGAHEISNVQRILIIQTQRNEYQEEY
FT                 NFFDPRKNFLPQVVSSIVSRGIQLLRSKKKLPTSSCILNLNPFLDSDGVIR
FT                 SCGRLTASDPLSYDESHPILLPYYCRMAELLVRFTHRISLHGGNQLILRLI
FT                 RTKFWIPKLRNLIKKVTTACKVCLIHRKKVQSQLMGRLPKSRSTFSRPFTH
FT                 TGLDFAGPFEVKSYTGRACRITKGYVCVLVCLSTKAYIWKLLQIGICLCPR
FT                 VSLYESIHLEATSDLTTEKFLGAFSRFASRRGCPLHLYSDNGKTFVGAEKV
FT                 LNKDFLETLKAKVTSTFNHQSLSWHFNPPGAPHMGGLWEAGVKSFKTHFYK
FT                 TAGNFKYTFEELSTLLCRIEACLNSRPISAMSDDPTDLLALTPGHFLTGGP
FT                 LLAVAEPPVTGEASSILNRWQRVKALSQLFSRRWKTEYLQEFHKRSKWQIP
FT                 TKNLTEGDLVVVKEDNTPLCDWRLGRIQKVYPGSDNNVRVVDIRTTRGLLK
FT                 RPISKVVFLPVDNNVQSLCVQCQTTTCRVYVFNVNNFIFASTNPIFFPFSL
FT                 QYFFFATFFRVIRQCRPTEASNQRKADVLEELNRSDAESVQGYILYGLALG
FT                 SYGSSVLFFRYFFSRHPTMPSHRSVQSTESRCSRGTKSFRCRVCTGIHPLR
FT                 TCPRFLRLNAERRMRAVLINKYCPNCLAHQHSEGACEASAVAKCVAVITTL
FT                 CSTLSHEEPTSTFPNSASSCSPHSAPLYRMKNRRQRSPTPPQAAEMPRLST
FT                 VLAHTSTAILPTANLRFDVGSKKFDVRVMVDACSGVSRIDNSLAEAMNLPI
FT                 LGVGSERVCKASLIPINAETPRMEVVFSVEDQLRMRTPARELSDTVRTQFA
FT                 NIVLADPNFYRPTGISVVLGADVYPNLIQPGLLPSPSGRLVAQNTVLGWML
FT                 SGTCAQSDPAWVITESEWASGGAEHCARMDAIRYLCTIILVSEDFLLQFEV
FT                 YCKAGGMSTPDLVFSTFSFSQLSINLSFSVRSDLVSSWTMIVTFYIQVLYA
FT                 SCKSVRTNLLKTLRXIKNRRIVL"
XX
SQ   Sequence 6059 BP; 1621 A; 1466 C; 1312 G; 1651 T; 9 other;
     acatatattt tctaatattt gggtttctag caagttgcca gtgagaacaa cgcttttttg        60
     ccgtgtacgc ctttacagtg gaattaattg ttttcaaaat agtgcgttcc cacttccact       120
     tcttggttcc ttacttccat aaactccagc atctacttct atttatcttt actaacatta       180
     aaactcaagt ttcatttgcg taaataaaaa gcaaacacca gacatgccag acggtgccgg       240
     aaatcaacta gccaaagaag gaaagaaaga tgatagtgca gggccttctg gcaatctaag       300
     atccaacgta aagggcactc gagacatagc aatgatggaa tttattgcca caagcgatcg       360
     attaagcaga tatgaggcac acatttttac accgtcagct atcgaaccaa cctcgtttac       420
     tttaaaggtc cgtctcgacc aaattcaatc cctatgggaa agggtagaga aggaatttga       480
     tttgcgttcc aggttggtca ttcaagaagg cggcggcagc agtccgtcgt tgcaaagcaa       540
     atacgacaat tgctactccg tttacgagag atgtgcatcg aaattgagtg agcaaatcgc       600
     tcaaatttcc gcttstacag cactgtcacg gcccaatccg gggcctgatt ttagttccaa       660
     aggctgtaat cttccaccat gcgatacaga ggtgtttgac ggtgattatt tgcgttggcc       720
     aacattccgt gacccgttaa cagctattta cgtcgacaac tccttgacta aagttgaaaa       780
     attmtttcac ttgaatgcta agaccagtgg taaagccaaa gccgttgtcg ccaaatctcc       840
     gcttactaat gatggtttcg aatccgcatg gggggcgctt gtggaacgct ttgagacaaa       900
     cgacttctcg tcaacagcca gttaaagatc ctttttaatc tgtcaasaat aggtatcgaa       960
     tcagggtcag ctttaaagga agtccaaacc gccattcaag ggtgtttgtt ggcgctagag      1020
     cactccgaag tttctgcttc taattgggac cgcgaggcgg tctttctttg ctcatccaag      1080
     ctaccaaaaa tcattctccc actatgggag cagtcattag ccagaaagtc cgagattcca      1140
     taaggacact cctagtaacc ataatagcta tgccaggatc aagcaactat gcaagaaggc      1200
     taccccaata cagccacttc tgtcsacttt gtttacaatc agcgaggagt ccttttaggc      1260
     acagccattg tccatgtgtg tcatttagga gaaaacttcc cagcccgagc cctgatgatt      1320
     caggttcaga aggcaccttt atttcggaag gtcttgctaa tgtattaaat tccattttaa      1380
     accgtgagga caaaagttat aggccttaac caagccagtt ctggagtctc aaaagctatg      1440
     ccatttccag attggcaacc ctgccaaacc aatgcttaaa gttgatacga ctgcactagt      1500
     cttgccacag ttggctggaa atcttcgacg aacacaactg atcgcagtac tctcagagag      1560
     ctaccaaata ttcagttagc tgaccctcta tttttccagc cttcgcaaat tgatttgtta      1620
     ataggtgcgg atattcttcc gtcgtacttc cctcaggttc taaacctaac ctgtgtggct      1680
     cgctactggg ccaagaaacg attttcgggt ggattttgac cggcccaatt tctttagcca      1740
     aaggaaaaag tgttttttcc ttcacaacaa aggtgccata caatctgagc ctactatgga      1800
     gacattgctc acaaagtttt gagaggtgga ggatctccca ggtcaggttg tgaaagaatc      1860
     cgatagtttt tgtgaacaaa atttcgtcca gacgacttcc agatcagcag aggggaaata      1920
     tgtagtatcc taccctaaag cggaacgtgt gagtctgggg cactcaaggt ctttcgccct      1980
     cgcacagttt ctacggaacg aataccgttt aaaaaaagat gctgttttga aaaacattta      2040
     tgactcagta atcaaaaaat acttggatct tggccatatg aagcaggtct cctcaaacac      2100
     ggacagtacc aatttttatt taccccacca cgcggttttt aagcccgaga gtgccactac      2160
     aaaggtacgt gtcttttcaa tgcttcgagt ccgtcgtcaa atgggaacag tctaaacgac      2220
     attctgtatc caggtccaat actacaatct gatctgaccc ttcaaatcct taagtggcgt      2280
     atatttcaat tcgtattcaa cgccgatatt acaaaaatgt accgccaaat cggagtaacc      2340
     ccctcacaca ctccgtttca aagaatcctc tttcgaaatg atcaagggga tatcgctgat      2400
     tacgaacttc agacggtcac ttttggagta aattgtgctc ctttttggcc ttacgcaccc      2460
     tacagcagct atccatgacg tcgaagcaca gtatccccgt gcttctgaca ttatttctaa      2520
     ttatatgtat gtcgatgatg tgcttgcagg agcacacaca aagtccgaag ccattttagc      2580
     catttcggaa ttacgatcag cgctcagttc agctggtttc ccccttcgta aatggacatc      2640
     caatgagaga gaccttctca aatctctccc caaagagcat ctgctctcgg tcgactttct      2700
     cgagattgag gaagtcagca ctacaaaaac gctgggagtg cgatggaatg caacggcaga      2760
     tgagttttat ttcgttgcga ctcaagtaga gttaaaatcg aagttttcaa aacgagaaat      2820
     cctgtcccag attgctagac ttttcgatcc agccggctgg ctatcaccat ttataatcca      2880
     agcaaaaata ttgatgcagg acatttggct agcgaaaatt ggttgggacg attttcttcc      2940
     cgcagattta cttcaaaggt ggcacgattt ccttcgcagc cacaacttcc tgcagaaagt      3000
     gcgcgttccg cgctggatac aatttcaacc cggcgcaaag gtccaagttc atgggttttg      3060
     cgatgcttcc caaaaggcat tcggggcggc gatatatgtt cgagttcaac gcggcggtat      3120
     catttcctct gagcttctga cagctaaaac taaggttgcg ccagtgaaaa cagtgtctct      3180
     gcctaggctc gagctttgtg gagctgttct tctggcagaa ctttgggccg cagcaagaat      3240
     ggcctaagca agaacgcagt ttctgaaact gatcttgaga aaaaggcggc gcgttgccac      3300
     ttcgcatgtc cgatatggga cattcttgat agattctccg atttcaaccg catgttaagg      3360
     gttatggcgt tcgtgcagcg tttcataaat cgatgtcgac gttttcgcag cacctatccg      3420
     ccagatttgg gcgcacatga aatatccaat gtccaacgaa tcctaatcat tcagacccaa      3480
     cgaaatgagt atcaagagga atacaacttc ttcgatccaa gaaaaaactt cctacctcaa      3540
     gttgtatcct caatctgaat ccgtttcttg attccgatgg cgtcatccga tcatgtggtc      3600
     gtttgacggc atctgacccg ctgtcatacg acgagagtca tccgattctt ttgccatatt      3660
     actgccgaat ggctgagctt ttggtccgtt ttacacaccg tatttctctt cacggtggta      3720
     accaactcat tttgcgtctc attcgaacga agttctggat tccaaaactt aggaacctta      3780
     ttaagaaggt gacgaccgca tgcaaagttt gccttattca tcgaaagaag gtgcagtcac      3840
     aattgatggg aaggctgcca aaatccagaa gcacattctc acggcccttt acgcacactg      3900
     gccttgactt cgctgggcca ttcgaagtga agagttacac tggccgagcc tgccgcatca      3960
     ctaagggata tgtctgtgtc ctcgtgtgtc tctctacgaa agcatacatt tggaagctac      4020
     ttcagatttg acaactgaga aatttcttgg tgcgttctcc agattcgcgt caaggcgagg      4080
     ctgccctctt cacctttact ccgataatgg aaagaccttt gtcggagctg aaaaggtatt      4140
     gaacaaagac ttccttgaaa ccctgaaggc aaaggtcact tcgaccttta accatcaaag      4200
     cctgtcctgg catttcaatc cccccggtgc gcctcatatg ggaggtttgt gggaagcggg      4260
     agttaagagt ttcaaaaccc atttctacaa gacggcggga aattttaaat acacgtttga      4320
     agagttatcc actctsttgt gtcgcatcga agcgtgtctc aattcgagac ctatatcagc      4380
     aatgtctgat gatccgactg atctccttgc gctcactcct gggcatttcc taacaggtgg      4440
     accattacta gcggtcgccg aaccacctgt gaccggcgaa gccagttcta ttctgaacag      4500
     atggcagcga gttaaggctc tgagccaact gttttcgagg agatggaaaa cagaatatct      4560
     ccaagagttc cacaaaagga gcaaatggca gattccaaca aaaaacttga cagaaggtga      4620
     cttggtcgtt gttaaggaag acaacacgcc attatgtgac tggagacttg gtcgcattca      4680
     gaaggtctat cctggctctg ataacaacgt tcgcgtagtg gatattcgca ctactcgcgg      4740
     actccttaaa agacctatta gtaaagtggt gttcctcccc gtagacaaca acgtgcagag      4800
     tctatgtgtt caatgtcaat aactttattt tcgcatccac taatccaatc ttttttcctt      4860
     ttagtcttca gtactttttt ttcgctactt tttttcgcgt catccgacaa tgccgtccca      4920
     ccgaagcgtc caatcaacgg aaagcagatg ttctcgagga actaaatcgt tccgatgccg      4980
     agtctgtaca gggatacatc ctctacggac ttgccctcgg ttcctacggt tgaatgcgga      5040
     gcgtcgtatg cgggcagtct tgatcaataa atactgtccc aattgcctgg cacatcaaca      5100
     ttcagagggg gcgtgtgaag caagtgccgt tgccaagtgt gtggcagtga tcaccacact      5160
     ctgctccact ttatcgcatg aagaaccgac gtcaacgttc cccaactccg cctcaagctg      5220
     ctgaaatgcc tcggctttca accgttctcg cgcacacctc gacagctatc ctgcccacgg      5280
     cgaatttacg tttcgacgta ggctcaaaga aatttgatgt cagagtcatg gtggacgcct      5340
     gttcaggcgt cagccgaatt gacaattcgt tggccgaagc catgaatctc ccaatcctgg      5400
     gagttggaag cgagcgcgtc tgcaaagctt cccttatccc tatcaatgcc gagacgccta      5460
     ggatggaagt ggttttcagc gtggaagacc agctgcggat gcgtactcct gcgagggaat      5520
     tgtccgacac agttcggaca caatttgcca acatcgtcct ggctgatcca aatttctaca      5580
     ggccaacagg aatctccgtg gttctgggtg cagacgtcta ccctaatctg atccagcctg      5640
     ggttattacc gagtccgagt gggcgtctgg tggcgcagaa cactgtgcta ggatggatgc      5700
     tatccggtac ctgtgcacaa taatactagt cagtgaagac tttcttttgc aattcgaagt      5760
     atattgcaag gcgggcggaa tgtctacgcc tgatctagtt tttagtactt tctctttctc      5820
     ccaactatcg ataaatttaa gcttttcggt aagatcggat ctggtctcat catggaccat      5880
     gatcgtcact ttttatatac aggttttata cgcttcttgt aaaagcgtac gcacgaatct      5940
     tctgaaaacc ctacgamaaa taaaaaaccg gagaattgtc ctatagtacc ctcaacgcat      6000
     tcttttcttc attttgtgca ttttktcacc akccamggaa acctactgca ccaatacat       6059
//
ID   BEL-14_DP-I repbase;    DNA;    INV; 5617 BP.
XX
AC   super_59;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DP_;
KW   BEL-14_DP-LTR; BEL-14_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5617
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1483-1483 (2012).
XX
DR   Genome; super_59; Positions  316531  310915.
XX
CC   'ATGTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1330
FT                 /product="BEL-14_DP-I_2p"
FT                 /translation="MTSEQNRVSFLKLKSTELCEKMKRLATAWQNESLDCD
FT                 YYMLVVKQEQIEKLIGKFETFHGELEELDRSEIHSGLCDIFESSSLKAAIM
FT                 REMAKSSGRMPFHSTLAGGNTTVDFAGSQFLPHRRQVPSLPPIQLPTFSGA
FT                 YANWTDFYSMFATIIDSHPDLKNIEKLQHLRSCLRDSALETVRSLEISDGN
FT                 YAVALDLLENRFNNRRLVFQAHINEILALQAVEPGSVVMLRELSDKFNSHM
FT                 RALQGLGTTEQIAGCIIVQELLRKLDPASQEKWEERFNEPAFANLIPSSAM
FT                 QIMGDDGLFYGKLCVEQSGGQK"
FT   CDS           1876..3885
FT                 /product="BEL-14_DP-I_1p"
FT                 /translation="MKSSTAVSGIGDSRFVTDGFSVNVSLHSRSSDYSTLI
FT                 TAIVASSITDRQPSFGIDTQNWNIPSNIPLADPEFYKPQRVDLLIGASLFF
FT                 ELLCVCQVKLLPGLPSIQKTRLGWVVSGSCSRLKGSSLMVSRARAVATEDN
FT                 SPEDRLEVLLRRFWEVENCIEPIIKSTKEELDCEAHFVQHFRRLHKGDYCV
FT                 RLPAKYNLDLHGESYNQALRRFLTLERKLDRRPDVKSQYAAFIKEYLDLGH
FT                 MSQVPTQSISNCRYFLPHHCVIKEDSSTTKLRVVFDGSASTSSGYSLNDVL
FT                 MAGPVIQPKRFHILARFRSYAVAITGDICKMYRCVRVSTEDSNLQCILWRN
FT                 SREEDLRVFQLDTVTYGTKPASYLSVRAMHQLAIDEQMAFPVGAVIHRRDF
FT                 YVDDLISGASSQEEAIRIREQTTGILSRGQFRLRKWCSNVPAVLDGVPEED
FT                 KETFLKFDDGSHVTKSLGLAWDPVSDLLLFSFSALQSSLNSCRRSVLSSIA
FT                 RFYDPLGLAGPVITKSKIFLQRLCQEKLSWDESLPVALNTEWQEICTSFGQ
FT                 IRRLEFPRLVLLPDSTLEIHGFFDASIEAYGACIYVVSKGQHFSSHLLCAK
FT                 SRVAPLKTLTVPKLELCGAELLARLISEIAGMNVFKGRCYCWCDSAVALSG
FT                 FGTSRQDLIFLLQIECQRFRK"
FT   CDS           3885..4910
FT                 /product="BEL-14_DP-I_3p"
FT                 /translation="MTEKMEWRYVPTALNPADILSRGAHPTDLNESPLWAH
FT                 GPSFLCGSSDDWPPTVLPDKPALELRRKALLVKSPYMDMDIIADSKYANSF
FT                 ASLQRVFGYIHKFCNRIRRPGLTVSDIEHGTQVLLRLVQRTQLWEDMKSLR
FT                 ARGAVSSSSSTASLSPFMDQLGLLRVDGRLKNSSLDFHGRHPIILPSSHPL
FT                 TLAIISHFHERNLHAGPRALLGLIRSQYWPIGGRKTVNKAVNKCVRCFRLK
FT                 PRVLEHIMADLPKERLDGSHAFEITGVDFCGPFFYKPEARNKAPIKCYVCV
FT                 FIFFPTKAIHLELIKDLSTVAFLHGLKRFICTRRKPRKNLVRQRNQFCRR"
XX
SQ   Sequence 5617 BP; 1342 A; 1340 C; 1382 G; 1553 T; 0 other;
     tttggggacc ccgatgtgat tgtgcaataa ataatccatc agtgcaatca caaactaata        60
     tagcattcaa agatctaaac taattgccat ctcaaccagt gtcatcgacc acataagtta       120
     tccatacata tatacaccgg cctcccctgc atattcggta gtgcacgtag ctgttggctt       180
     gcgcttctct tttcggtcat cttcccgcaa gaaacgtttc ttacaccggt cgcctttgta       240
     tatacagttc gtacatagct gttcgcttgc tgggctcggt tcttgtcgtc tattgctcgt       300
     gttatttttt gcgatcatct tcccttagag acgttggtct ttctgctaac gctgccgcta       360
     ccatggaagt tagtgctgct aaattccaat gaccagtgag caaaacaggg tgtctttttt       420
     gaagcttaag tcaacggaat tatgcgagaa aatgaaaagg ttagctaccg cttggcagaa       480
     tgagtcgttg gactgtgact actacatgct cgtggtaaag caagagcaaa tcgagaagtt       540
     gatcggcaaa tttgagacgt ttcacggcga gcttgaggaa ttggatcgaa gcgaaattca       600
     cagtggtttg tgtgacattt ttgagtcaag ctcgctgaag gcggcgatta tgagggaaat       660
     ggctaagagt agcggccgca tgccgtttca ttctaccttg gctggaggaa acactacggt       720
     tgattttgcc ggctcgcaat ttctacctca ccgtagacaa gtaccatccc tgcctcctat       780
     acaattgccg acgtttagcg gcgcgtatgc gaactggacg gacttttatt caatgtttgc       840
     caccatcatc gacagccatc cggacttaaa aaacatagaa aagctccagc atttgcgttc       900
     ctgtctgcgg gattcggcat tggagactgt tcggtcgctg gaaatctcag atggcaatta       960
     tgctgtggca ttagatttgt tggaaaacag attcaataat cggcgattgg tttttcaggc      1020
     acacatcaat gagatcttgg cgcttcaggc tgtggaacct gggtcagtgg tcatgcttcg      1080
     ggagctttca gacaaattca attcacatat gcgcgcgctc cagggtttgg gcaccactga      1140
     gcagatcgca ggatgcatca tcgtgcagga gcttctccga aaactggatc cagcgagcca      1200
     agagaagtgg gaggaacgat tcaacgagcc cgcattcgcc aacttaattc cgtcgtcagc      1260
     gatgcagatc atgggagacg atggactttt ctatggcaag ctatgcgttg agcaatcagg      1320
     tgggcagaag tagaaagcat aataattcta ggtccacatt ggttacaacg aaccaaaccg      1380
     tagcacgctg cgcgctgtgc aacgatggtg ttcacgaggt ccaacactgt cagaagttta      1440
     aagcgctgtc ccccacaaat cgacataaag aagccaagcg gctctcgtta tgtataaatt      1500
     gtctcagaac agggcatcga ttacttcagt gcacctcgag caactgtcgt acctgcgggg      1560
     gtagacacca taccctcctt cattttggta gccctgaaga taccgcagtc caagggaaat      1620
     cagcgccgta tactccatct tagtctgcct gagtctacgc cgtctgagca taccactgag      1680
     ccctctactt cagcggctac ctcgtctgcc cttattgccc aagatctcag taatggtgtt      1740
     gttctacttg ccacggccac ggtcttagtc aaaaatcgtt ccggagtttt agttccctgc      1800
     cgagcgttgc tggattccgg ctcccagttg catctaataa cttctcgttt cgcgaattag      1860
     cttcagcttc gaaaaatgaa atcatcgact gcagtctcgg gaataggcga ctctaggttc      1920
     gtcacggatg gattttcggt caacgttagc ctgcactctc gctcatcgga ttactcaact      1980
     ctcatcactg ccattgtagc ctctagcata accgatcgac agccaagctt tggaattgac      2040
     actcaaaact ggaacattcc atctaacata ccactagctg atccggagtt ttataagccg      2100
     cagcgcgtcg atctgctaat tggcgcaagt ctgtttttcg agctcctgtg tgtttgtcag      2160
     gtcaagctac tgccaggatt gccttcaatt cagaaaacgc gcttgggatg ggtcgtgtct      2220
     ggaagttgtt cgcgtttaaa aggttcctcg ttgatggtct ctcgcgctcg ggccgtagct      2280
     actgaggata atagtccaga ggatcggctt gaggtgcttc ttcggaggtt ttgggaggta      2340
     gaaaattgca tcgaaccaat aataaagtct accaaagaag agctagattg tgaagcacac      2400
     tttgtgcagc atttccgtcg actacataaa ggcgattatt gtgttcggct gccagcaaaa      2460
     tataatttgg atctccatgg agaatcttac aatcaagcgc ttcgtagatt cctgaccctt      2520
     gagaggaagt tagatcgtcg ccctgatgtt aaatctcagt atgcagcatt tataaaggag      2580
     taccttgatt taggccatat gtctcaggtt cctacccagt caatcagcaa ctgccgatat      2640
     tttttgcctc accattgcgt cataaaggaa gatagttcta cgaccaagct tcgcgtcgtt      2700
     tttgatggat ccgcttcaac ctcatctgga tattccctga acgacgtttt aatggctggt      2760
     cccgtaatcc aacccaaacg gtttcatatt cttgctcgat ttcggtcata cgccgttgcg      2820
     attacgggag atatctgtaa gatgtatcgt tgtgtaagag tctcgaccga ggatagcaac      2880
     ttgcagtgta ttctgtggag aaactcaagg gaagaagact tgcgtgtgtt tcaattggac      2940
     accgttactt atgggacgaa gcctgcctcc tatctatctg tgcgagcgat gcatcagttg      3000
     gcaatagacg agcagatggc gtttccagtt ggagctgtaa tccatcgccg tgacttctac      3060
     gtggatgact tgatatctgg agccagctcg caggaggagg ctatccggat tcgggagcaa      3120
     actactggaa ttttgtctag aggtcagttc agattgagga aatggtgttc gaacgtccct      3180
     gctgtgctgg atggagttcc ggaagaggac aaggaaacat ttttgaagtt cgacgatggc      3240
     agtcatgtta ctaaaagttt aggacttgcg tgggatccgg tttctgatct actattattt      3300
     tcgttctcgg cccttcaatc ttctttgaat tcctgcaggc gctctgtttt gtcatccata      3360
     gcgcgattct acgatcctct cggactagct ggtcccgtaa ttactaaatc caaaatcttt      3420
     ctccagcgtt tgtgccaaga gaagttgtcc tgggatgaaa gccttccagt cgcactgaac      3480
     accgagtggc aggaaatatg caccagtttt ggtcagattc gtcgacttga atttcctcgg      3540
     cttgtgctcc ttccagactc tacgctggaa attcacggat ttttcgatgc cagcatcgag      3600
     gcttatggtg catgcattta tgtcgtgtcc aagggtcagc atttcagcag tcacttactt      3660
     tgtgccaaat ctcgtgtggc tcctttgaag acacttacag taccaaagtt ggagctttgt      3720
     ggagcggagt tgctggctag gctcatatct gagatagctg gaatgaatgt attcaaggga      3780
     aggtgttact gttggtgtga ttctgccgtt gcgctctctg gattcgggac gagccgtcaa      3840
     gatttaatat ttttgttgca aatagagtgt caacgattca ggaaatgacc gaaaaaatgg      3900
     aatggcgcta tgttcccaca gctttaaacc cagccgacat tctgtctcga ggggctcatc      3960
     cgactgatct gaatgagtca cctctttggg ctcatggtcc ttcatttctt tgcggctcct      4020
     cagatgactg gccacccact gtgctacctg ataagccagc ccttgaactt cgtcggaagg      4080
     ctcttctggt caaatcgccc tacatggaca tggacattat tgctgattcc aagtatgcga      4140
     attcatttgc ttctttgcaa cgcgttttcg gatacattca caagttttgc aaccgaattc      4200
     ggcgccccgg actcacggtc tcagacattg aacatggaac ccaggtattg ctacgactag      4260
     tccagcgtac tcagctatgg gaggacatga agtcactgcg ggcaagggga gcagtctcct      4320
     catcgagctc aaccgcatcg ttatcgccat tcatggatca gttgggactt ctcagggtag      4380
     atggtcgact gaaaaactct tcgttggatt ttcatggccg tcatccaatc atcttgccca      4440
     gcagccatcc actgactctt gcaataatct cccattttca tgagcggaat ctgcacgctg      4500
     gtcctcgagc tttgcttgga ctaattcgat cccaatattg gcctattggg gggaggaaga      4560
     cggtaaacaa ggcagtaaac aagtgcgtaa gatgctttcg actgaagccc agggtattgg      4620
     agcatattat ggcggatctt ccaaaggagc ggctcgatgg ttctcatgcc tttgagatca      4680
     caggcgtgga cttctgtggg ccgtttttct acaaaccgga ggcacgcaac aaggctccaa      4740
     tcaagtgcta cgtctgcgtc ttcatttttt tccctaccaa ggctattcat ctggagctta      4800
     taaaggactt atccacagtt gcttttctac atggactaaa gcgcttcata tgtactagac      4860
     gaaagccgcg gaaaaatttg gtcagacaac gtaaccaatt ttgtcggcgc taagaatgag      4920
     ctgatggaat taaagcgcct ggtcctcagc gatgaccatc agaaggcgct gctggatttt      4980
     tgcttggtcg aggttataga ctggcatttc attcctccgc gctcccctca ttttggtggt      5040
     ctatgggagg ctgcagtgaa gacggccaag taccacttct accgtgcgat aggcaactcg      5100
     gttcttggat ttgacgagct gcggacgctg ttgtgccaca tcacggcagt gattaattca      5160
     agacctttag tttcaatttc agagagccct gccgatctag atgttctaac tccagcgcat      5220
     ttcttgaatg gtggccctcc tgcttcgttc gctgaacctg acgttacgct gctaaacttc      5280
     gatcgcctgg acggctggca gcgcgtttcg tacctgcagc agcttttttg gtcccggtgg      5340
     aaggaggaat acataacatc actgcagcag cgctcaaagt ggcccactgc gaagcctagt      5400
     ttagctgtcg cagatttggt tcttgtcaag gatgagaatc ttcctcccat gaagtggcca      5460
     ctggcgagag tggtcgagct tttgcctgga cgagatggcg tttcccgagt tgctgtgctg      5520
     aagacgtcac ctggaatcac caagcgcgcc gtcaacaagc tgtgcctgct gccccttaaa      5580
     gatgctgttg aaagtcaggc ttccaacggg gggagta                               5617
//
ID   BEL-14_DP-LTR repbase;    DNA;    INV; 473 BP.
XX
AC   super_59;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DP_;
KW   BEL-14_DP-I; BEL-14_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-473
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1484-1484 (2012).
XX
DR   Genome; super_59; Positions  310914  310442.
XX
SQ   Sequence 473 BP; 119 A; 122 C; 94 G; 138 T; 0 other;
     tgtcgggtca agcagcttaa atattttaaa ttattgccag tggtgcggcc caaaggaaat        60
     gcattttggt gttgtcgttt ccaatgcccc cactgcaaag atcatttgct accgcatatg       120
     cgcatgcagc ggaattcttt cgtctcctta tgtcgcaatc tctcggactc ggcttaacag       180
     cgtccccgag cagctctaac gctctcgggc tatcatacgc tctcgctcgc gtctaagctt       240
     gctgcatagg gcccggcaat ttggcccgtc agcccttgca tgggcagtct tgagctaatc       300
     gtcgcagcta ttagattaac atcctcgcat caatcgttcg cccaatcatt gccatatgta       360
     catacgcgat aagttggttt acatatgcaa ataaattgtg aattataaac agcctctcga       420
     ctttcattaa cttcaaattg caacagttat taaaaacgct taatagctta aca              473
//
ID   BEL-14_DTa-I repbase;    DNA;    INV; 6552 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DTa_;
KW   BEL-14_DTa-LTR; BEL-14_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6552
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1589-1589 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [5596-6171] - Integrase core
CC   'CTTGTT' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2132..3892
FT                 /product="BEL-14_DTa-I_2p"
FT                 /translation="MGKVDAGTKRKWEEQLDYTSLPLWSECESALNKRYQH
FT                 MVAEEACKPKIVQQSQAYPKKNGNRSFSFVAAIDDPEVCVFCNSAEHQVGN
FT                 CTAFAALTVQQRFDFAKKAPLCINCLRKGHTVKRCKSKRCRVCKSSHHTLL
FT                 HIYSPSNLALPAPPQPTLLQNTPSTSHVMHATASDKVILATAIVSVQTKSG
FT                 ELVLARALLDSGSQVNFVTDELAQRLQIKREDVCLSLRGIGGTNAQATKKI
FT                 HTIVKSRVGSSQLSSEFYILKNISGYHPDQTVNTSGWRVPENIQLADPFFF
FT                 KPQKIDMLIGADSFFELLSVGQIKQGPEFPILQKTVLGWIVSGRCASEKIR
FT                 NTEKLVHLSCQEEVLESIDTTLQKFWSVEDLPPKAKVHTPEQQLCEQHFEK
FT                 NTQRLSSGRFSVRLPFKSDPNTLGSSYEVAKRRFLSLERRLSKDPSLKKMY
FT                 LEFMEEYEAMGHMSSTNNKIPDSPHYFIPHQCVLRPQSTSTKLRVVFDASS
FT                 RTSTQVALNDILMVGPTIQEELYSTLLRFRLHKFALAADVKKMYRQVMVDE
FT                 ADRNFQLIVWRRDPSESLKIFKLNTVTYGLRQPPIWRFGV"
FT   CDS           3895..6519
FT                 /product="BEL-14_DTa-I_1p"
FT                 /translation="MRLGEIAQDSCPKAAKVIQNDFYVDDLLTGARSVEDL
FT                 LSLRDEVSQVLQEAGFELAKWFSNCPELSASESAVMPLTADSDVTKTLGVV
FT                 WLPGKDYFQFRLDDSFLDLRATKRNILSVTARLFDPLGLLCPLVTRAKMLL
FT                 QELWLRKLDWDESLPMQLQTSWEAFKGTLLQLPKIKVSRFVHTDAKVPAEI
FT                 HGFADASMRAYGACIYVRTSTAEGLKVSLLTAKSKVAPLKTKTLPRLELCA
FT                 AHLLADLYNRVRPLLNFPITKVFLWTDSEITLHWIKTHPSSLSVFVSNRVA
FT                 EIQEWSEKAIWRHVPTKVNPADIVSRGCDVEELTASIWFAGPSFLLDAEKD
FT                 WPVNRHFEVPADVVSMELRKSALALVVIPEPNCVLQKIESFSSHIRLLRVF
FT                 VWVFRFIQRCKKVSQPFEKSITPRELNFAFEKIVEVIQSHEFSDDIGKIRK
FT                 NKPVATNIQKLSPFLQEKKLDWCSSTLLRVGGRLLNAPIPYEAKFPLLLSK
FT                 GSQFVKAYVSYLHVTNCHAGPRALVSLLREKIWLVNAQEVCRRTVRSCIRC
FT                 FRCKPQLLTQIMGNLPSDRLRALRPFNICGVDFCGPFNTTYRIRGKPPYKS
FT                 YVALFVCFASKAVHLELVSDLTTDAFLLAFQRFVSRRGIPEKVWCDNATNF
FT                 VGADRHMREFRARLEEQGGGIATFASRRGCEFAFIPPRAPHFGGLWEAGVK
FT                 SAKHLFLRTVGEDILTAEELGTLLTSVEAVLNSRPLGAISTDPNDGEALSP
FT                 GHLLIGGPLLAPPSAALPDQVSPTCLRRWRSVSCLRHRFWQRWSREYVSSL
FT                 QAKNKWHQEVPNVAVGALVVVAEDNLPPQQWMIGRIVAVHVGADGKVRVAD
FT                 VKTKDTTYRRAVHRLAVLPVAC"
XX
SQ   Sequence 6552 BP; 1740 A; 1502 C; 1568 G; 1741 T; 1 other;
     tggtgacccc gacgtgatta gcagtggaac tcgagttgtt attttttttg gtgaaacaaa        60
     caaattaatc aaataaatcg cgccggcccc ctttttttta aacattaaag tgatttgttg       120
     ctgccgattt aattcgtcgt tgctgccgcc aaataaaatt gttgccgcca aataaattgt       180
     tggaagtttg gaagctgcag tttcttcgat ttccattgcc gctgctgttc tcaatcgccg       240
     ttagctggac cagtgtagtt gttgttgccg ctgctaatcc gctgttcctg cctacgttaa       300
     ttcgtcgttg ctgccgctgg aaaattttga ccgctgcagt tttcaatcgc cgttaagtgg       360
     gccagtgaaa ttgttgttgc cgctgcttgt cgccagttgc tgcctacgtt atttcgtcgt       420
     gctgccgctg gaaaattttg gccgttatcg ccaaattcac cgctttaatc ccctacgcac       480
     aggaaggaag gcatatggat tcgaagaggg aagttaccga cggatgtgaa tcgtcccacc       540
     aggtatagag tgctaaaagt tgaaagttaa tctgtggcgt tttgtaaatt gtgttttggc       600
     ccatctttca actttttgca ttcgtgtgaa aaattcggta gatagcgagc attctaacca       660
     agaaataaat aaaacttgca tgcactaacg attataattc tgataaattc catacaaata       720
     tacatatttc gaattataaa tacataagtg aatcgctttg gaccaaaatc aaataaatat       780
     ttgtcggcat cctggttgtt caaagaataa aattccccca tttctcgtcg tagtgaacac       840
     caattatagc tttgcaaaaa ttaaaagggt aaaagttggg aagtgtgaaa atttctaatt       900
     cgagaattaa attcccggca aattttcggc cgcgcatttt cctcaaattt ccctcgcttt       960
     tcgccatttc ccgcgctttt aggcgtcagg tttatatatt cgttgccctt agttatcggt      1020
     cagtgcatca ttctccgtta gcattgcgtt gagcaccgcc acccgtacac aatacacaca      1080
     cacgcacaga cagcgcagcc cgttctttcg agttctcttt cgtcgttttc gttttcgatc      1140
     gctggaacgg tgcaagcgtt gccgctgcct aaacgcttgt tcgttttttg gtgtttgagc      1200
     ttggcgtgtg ctcccctaca cgacgtgcgc tcggcatatt ataattattg aattattata      1260
     ataaattagg attccttaaa ttaattcccc ctcccctgct gcgttcagct tattctctcg      1320
     ttggtgtatt taaaaaaaac taaaataaat taaattataa actcttcgat accaaaaaaa      1380
     aaaaaccaaa atcagaaagt aacaacaagg acatcgaagg gttgaaaaac caacgagatg      1440
     gatatatgaa gagtatagag cgaacgcaaa gatatttaaa tgagggtcga ttctccttaa      1500
     atacggttga gttagaatgt cgattagaaa tcctaaatac gcacattgaa aatgcttcgc      1560
     ttatacagaa taaaattgaa gcgaaagatg gagatgatgw gtaccgcgaa gagttagaag      1620
     agactgcgat aatagcaaaa tcgttgctaa tttccctaat cgcggaaaca aagcttaaga      1680
     gcgttgacaa ttccgctccg ccggcaacgc gcacacccca atgccgtttg ccgagcgtcg      1740
     ctcttccaac ctttagcgga aaacattccg aatttaaaaa ttttataagc cttttcgaaa      1800
     cttttgttga caaagatgac acgctgcacg atatcgaaaa atttaaccat ctaatatcgt      1860
     gtttggctgg agacgcgcta ggaacagtca gggcattcca agttacagcg aataattacc      1920
     caaaagccct ggctagccta aggcgggtgt acgataatga ttgtttaatt tttttgacaa      1980
     tatatcgaca ctgtttaatc tgccaaagat ttcccagcca tcagctacag ccttgagaaa      2040
     cctgatcgac acagtcacag cgctgtacga ttctcttttg tccattgggg atgacaaacg      2100
     tattacgaat gccatcctca tccatctagt aatgggcaaa gtcgatgcag gaactaaaag      2160
     aaaatgggaa gaacagttag attatacttc gcttcctctt tggagcgagt gtgagtcggc      2220
     cctgaacaag cgctatcagc atatggttgc cgaagaagcg tgtaagccaa aaattgttca      2280
     gcagagccag gcttatccta agaagaatgg aaataggagt ttttcgtttg ttgctgccat      2340
     agacgacccc gaagtatgtg tgttttgcaa ctcagcagaa catcaagtag gaaattgcac      2400
     tgcttttgct gccctaacag ttcagcaaag attcgatttt gcaaaaaagg ctcctttatg      2460
     cattaactgc ctccgaaagg gccacacggt aaaaagatgc aaatcgaaaa gatgcagggt      2520
     gtgtaagtcc tcacaccaca cattgctgca catttactcg ccatcaaatc tcgcgttgcc      2580
     agctcctcct cagcccacgc tcttgcagaa tactccatcc acttcgcatg ttatgcatgc      2640
     gactgcatcg gataaagtta ttcttgccac agccatcgtg agcgtccaaa caaaaagtgg      2700
     cgaattagtt ttggctcgag cgttgctcga ttctggttca caagtaaatt ttgtgaccga      2760
     tgagctcgct cagagacttc agattaagag agaggacgtg tgtttgagct tgcggggcat      2820
     tggtggaact aatgctcaag caaccaagaa aattcacacg atagttaagt cgcgagtggg      2880
     tagcagtcaa ttgtcgtccg aattttacat actaaaaaat atttctggtt atcatccgga      2940
     tcaaacggtg aacaccagcg gctggagggt gcctgaaaat attcaattgg cagatccatt      3000
     cttcttcaag ccccaaaaaa tagatatgct tataggcgca gactcgttct ttgaactatt      3060
     gtcagtcggc cagataaagc aagggcctga gtttcccatt ttgcaaaaaa cagttctcgg      3120
     ctggatagtg tcagggagat gtgcctcaga aaaaataaga aatacggaaa agttggtaca      3180
     tctcagctgc caggaggaag tgttggagtc aatcgacaca accctgcaga aattttggtc      3240
     tgtggaggac ttgccgccca aggccaaggt ccatactcct gagcagcaac tttgtgagca      3300
     acactttgag aaaaatactc aaagattgtc gtccgggaga ttttcggttc gtctgccgtt      3360
     caaatctgac ccaaacactc ttggttcatc atatgaagtt gcgaaacgta gatttttgtc      3420
     gcttgaaaga agattatcca aagatccttc tttaaaaaag atgtatctgg aattcatgga      3480
     agaatatgaa gcgatgggcc atatgtcttc cactaacaat aaaatcccag acagtccgca      3540
     ctatttcatt ccgcaccaat gcgtgctgcg acctcaaagc acctcgacaa agttgagagt      3600
     ggtattcgac gcctcgagcc gtacatcgac gcaggtcgcg ttgaatgaca tcttgatggt      3660
     tggccccacc attcaagagg agctgtattc gaccctgctt cggttcagac tgcacaagtt      3720
     tgcgcttgca gcagacgtaa aaaagatgta tcgtcaagta atggttgacg aagctgaccg      3780
     aaactttcag ctcatagtgt ggagacgaga tccatctgag tctctaaaaa tcttcaagct      3840
     gaacaccgtg acttatggac ttcgccagcc ccctatctgg cgattcggtg tttaatgcgg      3900
     cttggagaga tcgcgcagga ttcgtgtcca aaagccgcca aggtcattca gaatgacttt      3960
     tatgttgacg atttgttgac tggcgccaga agcgttgagg acctgctaag ccttcgagac      4020
     gaagtttctc aggtattgca agaggcagga tttgaattgg caaagtggtt ttctaactgc      4080
     ccagagttat ccgcatctga aagcgctgtc atgccgctaa cggcagactc agacgtaact      4140
     aagacccttg gcgtggtttg gttgccgggt aaagattact ttcaatttcg gttggatgac      4200
     tctttcctgg atcttcgtgc gacaaaacga aacatactgt cggtgactgc ccgacttttc      4260
     gatccgcttg gcctgttgtg ccctctagtg actagggcaa aaatgttgtt gcaggaactg      4320
     tggcttcgaa agttagactg ggacgagtcg ctgccgatgc aactgcagac atcttgggaa      4380
     gcttttaagg gaacgctgtt gcaactgccc aagatcaagg tatcgcgatt cgttcataca      4440
     gacgccaaag tcccggcaga aatacatggt ttcgctgacg cttccatgcg agcatatgga      4500
     gcgtgcatct acgttcgcac tagtaccgct gaaggtttaa aagtatcttt attgacagca      4560
     aaatccaaag tagctcccct caagacgaaa actttgcccc gccttgagtt gtgcgcagct      4620
     caccttcttg cggatcttta taatcgtgta agaccattgc ttaattttcc gatcacaaag      4680
     gtgttcctat ggacggactc ggagatcact ctgcattgga ttaaaacgca tccgtcgtcg      4740
     ttgtcggttt tcgtctcaaa ccgagttgca gagatccaag agtggtcgga aaaagcaatt      4800
     tggcgacatg tccccacgaa agtaaaccca gcggacatcg tgtcacgggg atgtgacgtt      4860
     gaggaactca cagcttccat ttggttcgct gggccgtcgt ttttgctcga tgcagaaaaa      4920
     gattggcctg tgaatcgaca cttcgaagta cctgctgatg tcgtgtcgat ggaattacgc      4980
     aaatcagctt tggcgcttgt ggttatccca gagcctaatt gtgtgcttca gaaaatagaa      5040
     tccttttcgt cgcacataag gcttctaagg gttttcgtgt gggtctttcg gtttattcaa      5100
     aggtgcaaaa aagtgtcgca gccttttgaa aaaagtatta ctccaagaga actgaatttt      5160
     gcgttcgaga aaatagtgga agtgatccaa tctcacgagt tcagtgacga cataggcaaa      5220
     attcggaaaa ataaaccggt agcaacgaat attcaaaaac taagcccttt tctccaggag      5280
     aaaaaactag attggtgttc ctcgacattg ctgcgagttg ggggtcggtt attgaatgct      5340
     cctatcccgt acgaagccaa attcccgttg ttgttgtcga aaggctcaca gtttgttaaa      5400
     gcctacgtgt cctacctgca cgtcacaaat tgtcatgctg gccctcgagc tcttgtaagt      5460
     ctgttgcgag aaaagatatg gttggttaat gcgcaggaag tttgccgcag aacagttcgg      5520
     tcttgcattc gttgctttcg gtgcaagcct caactcttga cgcaaatcat ggggaacttg      5580
     ccatcagaca gacttcgagc tctccgcccc tttaatatct gtggtgttga tttttgtggc      5640
     ccatttaaca caacgtatcg tatccgtggt aagccgccgt acaaatcata cgtggcattg      5700
     tttgtatgtt ttgcgtccaa agcggtccac ttagagttag tgtccgacct caccactgat      5760
     gcgtttttgt tggcattcca aaggttcgtg agtcgacgcg ggattccgga gaaggtgtgg      5820
     tgcgacaacg cgacgaactt cgtcggagcc gatcgccaca tgagagagtt ccgggcccgt      5880
     ctggaggagc aggggggcgg tatcgcaaca ttcgcatcaa gaagaggatg cgagtttgcg      5940
     ttcataccgc ccagagcacc tcacttcggc ggactttggg aggcaggtgt gaagtctgca      6000
     aagcacctgt tccttcggac ggtcggcgaa gacatcctga ccgcggagga gctcggaact      6060
     ctcctcacca gcgtggaggc cgttctcaac tccaggcccc tcggagcgat cagcacggat      6120
     cccaacgacg gcgaagcact aagcccaggc catctcctga tcggcgggcc cctactagct      6180
     ccaccctcag cagcgctccc ggaccaagtc agcccaacct gcttgcgacg atggcgcagt      6240
     gtctcgtgtc tcaggcacag gttttggcag cgatggtccc gggagtacgt ctcgagcctc      6300
     caggcgaaaa acaagtggca ccaggaggtt ccaaacgtcg ccgtgggagc tctcgtcgtc      6360
     gtcgccgagg acaatcttcc gccgcagcag tggatgatcg gtcggatcgt ggcggtgcac      6420
     gtcggcgctg acggcaaggt ccgagtggcg gacgtgaaaa cgaaggatac gacgtatcgg      6480
     cgagcggtcc ataggctggc ggtgctgcct gtggcgtgct gaagacggtg gtccttcaga      6540
     gggggcggtg tt                                                          6552
//
ID   BEL-14_DTa-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DTa_;
KW   BEL-14_DTa-I; BEL-14_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-272
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1590-1590 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 272 BP; 78 A; 56 C; 51 G; 87 T; 0 other;
     tgcgcacttt gcgcttttat aatgaaattt gttgaatagt gtaaggcggg agcgggagcg        60
     caataaagct ttaatcgcgc tcgcgaattc gccccgtctc tcgccccttt cgttaagtta       120
     ggcttaagcg tttatatatt gaaattaaag agtcagttgt catatgaatc tcattgcgca       180
     aactcccttt cgtcgtcgcc aaaaataaaa tatcaaattt ccctgcaatc acaagttttc       240
     gcgttgtaat acaaaatagt attaaatttt ca                                     272
//
ID   BEL-14_DWil-I repbase;    DNA;    INV; 5460 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   04-NOV-2011 (Rel. 16.11, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DWil_;
KW   BEL-14_DWil-LTR; BEL-14_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5460
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..5457
FT                 /product="BEL-14_DWil-I_1p"
FT                 /note="DUF1759, DUF1758, reverse transcriptase,
FT                 peptidase and integrase."
FT                 /translation="MEELKALVGRRSRLKASITRILDWSERTQTTSTTEVA
FT                 ARMDQLQSVWKEFNGIGDSIALLEDVDGYVDPEVDHVTYEEKYLKAYSLLL
FT                 GKKRLVQQQASLSGDGNGAMGLHAYNDDIVHLLQQQQQLFEQLAANQSSSN
FT                 LSMPARNEMAASGSTSGNNTTAFVHGGELPKIQIKRFAGLYTEWPAFQDIY
FT                 ESTIHNKRELTNTQKFHHLKTLLVDDAANLVRHLAITDTAYNTAWERLKER
FT                 YNRPRHIVNSFLEKFMGLPTTNKIDVSILRKVSDGTNEIVRGLDAINQTGR
FT                 DCWIQYLVLEKLDADTRRRWIERSMGNEAPTLEEFFKFLDDRCEELELSKR
FT                 EIAFGGKTPAQITHTKRVTHSMVAVQAGSCTKCQATDHKLYGCQQFMDLTL
FT                 AERRMFIREKALCYNCLKSGHMVKNCPSSFSCKYCKGKHHSLIHDPGNSMA
FT                 LRNLQQGKRENQRSPNASHHDLSTTSLVAHNGSAPATVCSQSSAKLKTGKG
FT                 LNRSILPTATVYVQKVNGDYITCRILLDTGSELSYVSERCIQALGLPRSAS
FT                 SILVTGISSVQADTTRGSSTLQIKSRYSNNHLTVQAHVLGKITSTLERQNI
FT                 DASALDVFSDLQLADSEFTTSAPIDVLLGGEHVWSTITGKKLYDNTGKLIA
FT                 ISSIFGWVISSITMPQANNAFALTSYIDVNASLQRFWELEDISSTTKLEPD
FT                 DEQVEKHFLATHTRDEKGKYIVELPFKVTNPEFGDTLQGALNRFQSVERRL
FT                 QQDANLRAKYVNFMREYFDLGHMRELPPDEVNNXQRFYLPHHPVLGRKLRV
FT                 VFDGSFCDTKGKSLNDYLFTGPSIQRDLFAVCLRFRMYKFVFSADIVKMFR
FT                 QIWVNNKHRDFQRIVWRERPSDPIKHYQLCTVTYGTSCAPFLAVRVLEQLA
FT                 TDHQQEFPNAAKILQEDFYVDDVLTGSNSEEELIQNRKELIQLMSCANLEL
FT                 GKWVSNTPRIPTEGTDSTQSSPVKVLGLYWQPGLDTLSYNVGLKGNVDCTK
FT                 RQVLSDVSRIFDPLGLLAPIVVQFKILFQQLWLLDLGWDDKLPKQLADNWL
FT                 KWRADLDMLQHIQIPRLVVNDTDNIELHGFSDASTKAYAAVVYSRVINKDG
FT                 SISTSIMAAKSRVAPLKQQSLPRLELCAALLLSQLIRSIKAALRHQKVTVF
FT                 AWCDSTIVLYWLSYAPSRLKTFVGNRTSEILDTIPRHYWRHVDSKSNPADC
FT                 ASRGLMAADLKDFQLWWNGPSWIRDADQFMVRLNNSQVCLNISEKNIEKEV
FT                 KSNCLTALVEATPDHPLDHLVQRVSSWLTLVHTVGYVLRFLRRTKGPFGDK
FT                 GSNCLTFEEITAARIVCLRHAQTCFQDDYQLLLANKPLRSRSQLAKLSPMI
FT                 DKDGLLRVGGRLHHSQLSTEAKHPVLLPKSHRITKLILEYEHRVNLHPGVS
FT                 SLFVMVRQRFWIFGARNLIRKVTHDCLACFRQRHHTSQQRMADLPSIRVTQ
FT                 ALPFVNTGCDYAGPILLKDGKGRKPRIGKGYICLFVCLVTSAIHLELVTDL
FT                 STDSFLAALRRFVSLRGKCNKIYSDNGTNFIGAKRSLDEMQKLLASQPHIE
FT                 KVRNTLANDGIQWVFIPPHAPHWGGKWESAVRCVKLHIRRVIGKSTLTYEQ
FT                 MRTLLAQVSAVVNSRPLCYNSDTDVNYLSPAHFLIGRPLTTIPEADLGHIP
FT                 VGRLGYWQSIQSMMQGFWKQWHQEYLTTLQQRPKWTTTTPNIAVGDVVLVK
FT                 ESNTPPAHWHLALVLEAYPGKDQLVRAVRLKTSSGELTRPITKVAVLPRSE
FT                 TVFQGGP"
XX
SQ   Sequence 5460 BP; 1569 A; 1249 C; 1266 G; 1373 T; 3 other;
     tactttggtc attcgagccg aataagggaa tcggttttcg atcgaataaa gtgcttttcg        60
     ttcgaatttc tttggatcta ttggaaagtt tggtgggtta ttactctgga atagttctgt       120
     acaatggaag aactaaaggc attggtgggt cgacggagcc gactcaaggc cagcataaca       180
     agaattctgg attggtcgga acgaacccaa actacatcaa ctactgaggt agccgctcgg       240
     atggatcaac tccagtccgt gtggaaggaa tttaatggaa tcggggattc catagccctt       300
     ctggaagatg tggacggcta tgtggatcca gaggtcgatc acgtgaccta cgaagagaag       360
     tacttgaagg catattcttt acttctggga aaaaaacggt tagttcagca acaagcatca       420
     ttgtctggcg acggcaatgg cgccatgggt ctgcacgcat ataacgacga catcgttcat       480
     ttgctgcaac aacaacaaca actctttgaa cagttagctg caaaccagag cagttcaaac       540
     ttgtcgatgc ccgctcgcaa tgagatggct gcttcgggtt cgacttcggg aaacaacacg       600
     acggcattcg tgcatggcgg cgaattgcca aaaattcaaa taaaacggtt cgctggactc       660
     tacacagagt ggccagcttt tcaggatatc tatgagagca cgatacacaa taaaagggag       720
     ttaaccaaca ctcaaaagtt tcatcactta aaaacactgc tcgtcgatga tgctgccaac       780
     ttggtgcggc acctggcgat aactgacacg gcttacaaca ctgcttggga acgcttaaag       840
     gaaagataca ataggccacg ccatattgtg aactcatttt tggagaaatt tatgggtcta       900
     ccaacgacaa acaaaattga tgtgtccatc ttacgcaagg tatcagatgg cacaaatgag       960
     attgttcgcg gtctggatgc gatcaatcaa acaggacggg actgctggat acaatatctg      1020
     gtattggaaa agcttgacgc tgatacacgg cgcaggtgga ttgagcgcag catgggcaac      1080
     gaggcgccca cactggagga attcttcaag ttcttagatg atcgttgtga ggaattagag      1140
     ctcagcaaac gggagattgc gtttggaggc aaaacgccgg cgcaaatcac acacacaaaa      1200
     cgggtcacac attcgatggt tgcagttcaa gctggcagct gcaccaaatg tcaggcgacg      1260
     gatcataagt tgtatggctg tcaacaattc atggatttaa cacttgcaga acgtcgtatg      1320
     ttcatcaggg aaaaggcttt atgttataat tgcctgaaat cagggcatat ggtcaaaaac      1380
     tgtccatcat cattctcatg caaatattgt aaaggtaagc accattctct gatccatgat      1440
     ccaggtaact caatggcttt aaggaacttg caacaaggaa aaagggagaa tcagcgtagt      1500
     ccaaacgctt ctcatcacga tttgtctaca acaagtctag tggctcataa tgggagtgca      1560
     ccagcaacgg tttgttcaca aagctctgcg aaattgaaaa caggaaaagg tttaaatcga      1620
     agcatattgc ctactgcaac ggtttatgtt caaaaggtaa atggagacta cattacatgt      1680
     cgtatcttac tagatactgg gtcggaactt tcatatgtat cagaacgatg catacaagca      1740
     cttggattgc cacggtcggc atcatccatt ttggtcacag gaatctcttc ggttcaggct      1800
     gacaccacaa ggggaagcag cacgcttcag ataaagtcaa ggtattcaaa caatcactta      1860
     acggtacagg ctcatgttct tggcaaaatc acatcaacac tggaaaggca aaacattgac      1920
     gcatcggcac ttgatgtctt tagcgatctt caactcgctg actcggaatt caccacaagc      1980
     gctccaattg acgttctttt gggcggtgaa cacgtttggt ctacaatcac agggaaaaag      2040
     ttgtatgaca atacgggcaa actcattgca atatcatcga ttttcggatg ggtcatcagc      2100
     tctataacga tgccccaagc taacaacgct ttcgctttga catcatacat tgatgttaac      2160
     gcttcgctcc agaggttttg ggagctagag gacatcagtt ccacaaccaa attggaacct      2220
     gatgatgagc aggtggagaa acactttctc gctacgcaca ctcgagatga aaaggggaag      2280
     tacatcgtgg aacttccatt caaggtcact aatcctgaat ttggggatac tctacaagga      2340
     gctcttaatc gtttccaatc ggtggaacga cgtttacaac aagatgcaaa tctaagagca      2400
     aaatatgtca actttatgag ggaatacttc gatttggggc atatgcgcga actgccacca      2460
     gatgaagtca ataatgmmca acggttttat ctaccacatc acccggtttt gggtcggaaa      2520
     ctgagagtag ttttcgacgg atcattttgc gacaccaaag gcaaatcact aaacgattat      2580
     ctctttacag ggcctagcat tcaacgcgat ctatttgctg tctgcttgcg ctttcggatg      2640
     tataaatttg tattctcagc cgacatagtc aagatgtttc ggcagatttg ggtgaacaac      2700
     aaacaccgcg acttccagag aattgtctgg agagaaaggc catcggatcc aatcaaacac      2760
     tatcaactat gcaccgtcac ttatggcacc tcatgtgcac cattcctggc tgttagggta      2820
     ttagagcaac tggctactga tcatcagcag gaattcccga atgctgcaaa aatcttacaa      2880
     gaggattttt atgtcgacga tgtgctcact gggtcaaaca gtgaggagga actgatacaa      2940
     aatcgaaagg aacttattca acttatgtcc tgtgctaatt tggagcttgg gaaatgggta      3000
     tcaaacacac ctcgcatacc aacagaagga actgattcta cacaatcatc tccagtgaag      3060
     gttcttggac tttactggca acctggtctt gatacattgt cttataatgt tggtctaaaa      3120
     ggaaatgtcg attgtacaaa acgacaagtt ttatcggatg tctcacggat ctttgatcca      3180
     cttgggcttt tggcaccaat tgtggtccaa ttcaaaatac tctttcaaca attatggctt      3240
     ctcgatttgg gatgggatga caaactccct aagcaactag cggacaattg gctcaaatgg      3300
     cgagcagatt tggatatgct acaacacatt caaatacccc ggttggttgt caacgacacc      3360
     gacaacattg aattgcatgg attctccgat gcatctacga aggcatacgc tgctgtagtg      3420
     tacagcagag taatcaacaa ggatggctcg atttctacat cgattatggc tgcgaagtct      3480
     agggtggctc cgctaaagca gcaatctctg ccccgcctag agctttgcgc ggcacttctc      3540
     ctaagtcaac tcatacgttc gataaaggcg gcacttcgac atcaaaaggt cacggttttt      3600
     gcatggtgcg attccacaat cgtactctat tggctatcat acgcaccctc tcgactaaag      3660
     acatttgttg ggaacmgaac ttcggaaatt ctggacacca ttccaaggca ttattggcgt      3720
     catgtggact ccaaatcaaa tccagctgat tgcgcatcca gaggtctcat ggctgcagac      3780
     ctaaaggact ttcagttatg gtggaatggc ccgtcatgga tacgtgacgc ggatcagttt      3840
     atggtaaggt taaacaactc acaagtctgt ttgaatattt cagaaaagaa catagaaaag      3900
     gaagtcaaaa gcaattgtct gactgcatta gtagaggcaa ctcctgatca tccacttgat      3960
     catcttgttc aacgagtatc ttcatggttg acgctcgttc acacggttgg ctatgtccta      4020
     cgctttctac ggcgcactaa gggtccattt ggggacaagg gctcaaactg tcttacgttt      4080
     gaggaaatca ccgcggcacg cattgtatgc ttgcgccacg cgcaaacctg ctttcaggat      4140
     gactatcaat tgctactcgc aaataaacca ttgcgaagtc gatctcagct ggctaaactc      4200
     tcgccaatga tcgacaagga cggactactc agggttggag gacgcttgca ccactcgcaa      4260
     ttgtccacag aggcgaaaca tccagttttg ctaccgaaat ctcatcgcat caccaagctg      4320
     atacttgaat acgaacacag ggtcaacctg caccctggcg tctcatcact ctttgttatg      4380
     gtacgtcaaa gattctggat atttggcgca aggaacttga taaggaaagt cacacacgac      4440
     tgtttggctt gttttcgaca gcggcatcat acatcacaac aaaggatggc tgatctaccc      4500
     agcattcgtg tcactcaggc acttccattt gtaaacactg gatgtgacta tgctggtcca      4560
     atccttctta aggatggaaa ggggcgcaaa ccgcgcattg gtaagggcta catatgccta      4620
     tttgtttgtc tggtcacatc ggcaatccat ctggaacttg taacggactt gagcaccgac      4680
     tcattcttgg ccgcgctaag acgtttcgtc tctttgcgtg gcaagtgcaa caaaatctat      4740
     agcgacaacg gaacgaattt cattggagct aaacgctctc ttgatgaaat gcagaagctg      4800
     ctggcatctc aaccacacat cgaaaaggtt aggaacactc tggcgaatga tggcattcaa      4860
     tgggtattca ttccaccaca tgctcctcat tggggaggaa aatgggaatc tgcagtcaga      4920
     tgcgtaaagc tgcatattcg ccgagtcatt gggaaatcta ctctcaccta cgagcagatg      4980
     cgaactctac ttgcacaagt cagtgcagtg gtcaactcac gacccttgtg ctacaactcg      5040
     gacacagatg tcaattattt gtcgccagca catttcttga tcggcaggcc tctcacaacc      5100
     ataccagagg cagacttagg ccacatcccc gtgggccgac ttgggtactg gcaaagtatc      5160
     caatctatga tgcaaggctt ctggaagcaa tggcaccagg agtatcttac cacattgcaa      5220
     cagcgtccaa agtggaccac tacaacacca aatatagcag tcggagatgt ggtgcttgta      5280
     aaggaatcga acaccccacc agctcactgg catctggcgc tggttctcga agcctaccca      5340
     ggcaaggatc aattggttcg agcggtcaga ctcaagacct cttcgggaga attaactcgg      5400
     ccaatcacca aggttgcggt attgccccgt tcagaaactg tgtttcaggg cgggccggga      5460
//
ID   BEL-14_DWil-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_DWil_;
KW   BEL-14_DWil-I; BEL-14_DWil-LTR.
XX
NM   BEL-15_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-223
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 223 BP; 71 A; 43 C; 44 G; 65 T; 0 other;
     tgttcaggaa cggattgcgt ttatcgataa gtcagatgta gttgtaagaa tcgacacata        60
     cataagcatt gtacacacac acatatttgt gcgctgctgc gacagcgctt tttctcgttt       120
     ggtttagtaa taaattggca ctcaactgat tcagtagcga agaaatacaa agtgaagtta       180
     tccaacttaa tttcaaggta cagtccactg ctagaccaaa tca                         223
//
ID   BEL-14_LH-I repbase;    DNA;    INV; 5459 BP.
XX
AC   ADOQ01006108;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_LH_;
KW   BEL-14_LH-LTR; BEL-14_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5459
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01006108; Positions   28492   33950.
XX
CC   Positions [4326-4910] - Integrase core
CC   'AATAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..1905
FT                 /product="BEL-14_LH-I_1p"
FT                 /translation="MDTSTSFEQLLSLQTQKMGFVSRALANYKKLGQAKMT
FT                 PAVTRQRLVTLKEAFTTCQELDSRIVLLADDEDRASHAYFTKNSLLECEDC
FT                 YHEAADYMAEVLESYESRTPPATSSQNVSGFRDVLRTASHLPRINLPTFDG
FT                 SIDKWESFRDKFQSMIHNDHSLSNVDRLHYLCSCVKGDASDALDHLAVTNH
FT                 NFDIAWKILVSRYDNTRRLVTTHLQSLLNLPLLTTETAHDLRQLRDQTNKA
FT                 IQALRNLNRPVEHWDDLLVLLVAQKLDKYSRKAWELKLGDTVGYPRYNELD
FT                 QFLESRIRALEAIAPPPKEKPSATSKGKTLAAHTASTVSFACPWCKANHLL
FT                 YQCSTFLKQTPSQRFDFIKQQKRCLNCFSSKHSVKDCSNSRVCRQCNKRHH
FT                 TLLHFDNSTQPDKTESPPAISKIVNEVTSHLLSKTVAPNSNILLATARVRV
FT                 YSPVGRFTTVRALLDQGSVSTFITESLAQRLRLPKLNRSIFVTGISEMQSV
FT                 VRHAAHITITPANYDEPAYSTTALILRSLTKYLPNRISTMCTWNHVDGLQL
FT                 ADSDPMSTDPIDMIIGADLFGMLVLDGVTKGSEMEPTAQNTTLGWIYFRSN
FT                 RIVFDQLFDF"
FT   CDS           1799..3799
FT                 /product="BEL-14_LH-I_2p"
FT                 /translation="MVLRKVPKWSLPRKIPLSVGFISGPIASSSTNCSISE
FT                 IAHHGVVLEALDLDLRRFWETEEVPQPQRHSPDERKCEEHFLATHSRTPQG
FT                 RYIVRLPFKTGPPISLGESRFIAESNLYRLEQRFRRNPSIASEYHDFLAEY
FT                 ENLGHMIKSPPTEIVHTDQSYYIPHHAVLRDSSATTRLRVVFNASCRTTNG
FT                 TSLNDNMFIGPKLQRDLAAVIMQWRQHRYVFTADIAKMYRQILVDFRDTDY
FT                 QRILWRSSPSEPVRDYRLLTVTYGTAAAPYLALRVLDQLAEDNGAQFPLAV
FT                 PVLRHQTYVDDCAFGADDRILARQTRDQLIALLAKGGFRLRKWASNSTDLL
FT                 SDLDPADHGLATHKVLQDDEHLKVLGVIWNPKLDAFQLRVSLPSLPGKTKR
FT                 TVLSTIAKFFDPMGWATPVIIGAKIFMQRLWSLQCQWDDEIPCEHFDYWAN
FT                 YHHQLPCLEALSIPRWTTHGSHTLHSALHGFSDASTMAFAAVVYLRVVNVD
FT                 GSITISLLIAKSKVAPLKTISVPRLELSAALLLARLVNYARSALQLPSIEC
FT                 HCWTDSTITLAWLRQSPSRWKTFVANRVSIVQSLLPGIYWRHVPTQDNPAD
FT                 CASRGLAPDALANYNLWWAGPSWLCQSPESWPTFDLSIPSDTTLEQRSQPP
FT                 IHSLHSTPRWNLASRYSS"
XX
SQ   Sequence 5459 BP; 1362 A; 1508 C; 1143 G; 1446 T; 0 other;
     ttccggtcct tcgagccgga tcgtcgccaa ggagaattac tggccttccg aacactcaaa        60
     ttccgaatca cgatcgtcga tatggacacc tcgacatctt tcgagcagct tttgtctcta       120
     caaacccaga agatgggttt cgtatcccgg gcgctcgcca attacaagaa gctggggcaa       180
     gccaaaatga cacctgcggt aacgcgtcaa cgtctcgtca ccttgaagga agcctttacc       240
     acttgccagg agctcgacag tcgaatcgtg cttcttgcgg acgatgaaga cagagcatcg       300
     catgcctact ttacgaagaa ttcgcttctg gaatgtgagg actgctacca cgaggctgcc       360
     gactacatgg cggaggtatt agagagctac gaatcccgca cccctcccgc tacttcatca       420
     caaaacgtaa gtggctttcg tgatgtactc cgaaccgcgt cgcatcttcc gaggatcaac       480
     ctaccaacct tcgacgggag catcgacaaa tgggaaagtt ttcgcgataa attccaatcg       540
     atgattcaca acgatcatag tttgtcaaat gtcgatcgct tacattattt atgctcatgt       600
     gtaaaagggg atgcgagtga cgcgcttgac cacctcgcgg taaccaatca taatttcgat       660
     atcgcgtgga aaattctggt ctctcgttac gacaacacac gtcgtctcgt taccacacat       720
     ttacaatcgc tgttgaattt gccgttgctc acaacagaaa ccgctcatga ccttcgtcag       780
     cttcgcgacc aaaccaacaa agcgatacaa gcgcttagga atctcaaccg tcctgtcgaa       840
     cattgggatg atttgcttgt tttgctcgtt gcacaaaaac ttgacaaata ctcgcgtaag       900
     gcttgggaac tcaagctcgg tgatactgta ggatatccgc gttataatga actcgatcaa       960
     tttctcgagt ctcgaattcg cgcgctcgag gcgattgcac cacctccaaa agaaaagcca      1020
     tccgctacct ctaaaggaaa aactctcgcg gcgcataccg cgtctaccgt ttcgttcgca      1080
     tgtccgtggt gcaaagccaa tcacttatta taccaatgtt ctacattttt aaaacaaaca      1140
     ccctcccaac gtttcgattt tattaaacag caaaaacgat gtttaaactg ctttagtagt      1200
     aagcattctg tcaaagattg ttcaaattct cgcgtatgcc gccagtgtaa taaacgtcat      1260
     cacacgttgt tacatttcga taactcgact cagccggata aaactgagtc accaccggcg      1320
     ataagcaaaa ttgtaaacga agtcacgtcg catttactat cgaaaaccgt cgcgccgaat      1380
     tctaatattc tgctcgcgac tgcccgtgtg agagtctact cgcctgttgg acgttttacg      1440
     actgtacgcg cacttttgga tcaaggctcc gtttctacgt ttattaccga atcgctcgcg      1500
     caacgtttac gactcccaaa attaaatcgt tcgattttcg tcaccggcat cagcgagatg      1560
     caatccgttg tccggcatgc tgcccacatt accattacgc cggcgaatta cgacgaaccc      1620
     gcttattcaa cgaccgcgct cattcttcga tcgttgacaa aatatctgcc gaatcgaata      1680
     agcactatgt gcacgtggaa ccatgtcgac ggactccaat tagctgatag tgaccccatg      1740
     agtaccgacc cgattgatat gataatcgga gcggacttat tcggcatgct tgttctcgat      1800
     ggtgttacga aaggttccga aatggagcct accgcgcaaa ataccactct cggttggatt      1860
     tatttcaggt ccaatcgcat cgtcttcgac caattgttcg atttctgaga tcgcgcatca      1920
     cggagttgtc cttgaagcgt tagatctcga ccttcgtcgt ttctgggaga ctgaagaagt      1980
     ccctcagccc caacgccaca gccctgacga gcgaaagtgt gaagagcact tcctcgctac      2040
     ccattcccgc actcctcaag gacgctacat tgttagatta ccgtttaaaa ccggaccacc      2100
     aatctcgtta ggagaatctc gtttcattgc cgaatcgaac ctctaccgcc tagagcaacg      2160
     tttcagacgc aacccatcta tcgcttccga atatcacgac tttctcgcgg agtacgaaaa      2220
     cctcggtcat atgattaaaa gtccaccgac agaaattgtt catacggatc aaagttatta      2280
     tataccgcac cacgctgtct tacgtgacag cagtgcaacc actcggctgc gggttgtttt      2340
     taacgcctcc tgccgtacca ctaacggaac ctcgctaaac gataacatgt ttatcggacc      2400
     taaacttcaa agggatttgg ccgctgtcat aatgcagtgg cgccaacatc gttacgtatt      2460
     taccgccgat atcgctaaaa tgtatcggca aatattagtt gacttccgcg atactgatta      2520
     tcagcgcatt ctatggcgct cttctcccag tgaacctgtt cgcgactacc gtcttctcac      2580
     tgtgacgtac ggcactgccg ccgctccata tctcgctctt cgagtgctcg accaactcgc      2640
     tgaagataac ggtgcccaat ttccattagc cgtcccggtt ctccgtcatc agacatacgt      2700
     cgatgattgc gcgttcggag ccgatgatcg catccttgca cggcaaacgc gcgaccaatt      2760
     aatcgcgctt ctcgctaaag gaggctttcg tctgcgaaaa tgggcaagta attccacaga      2820
     tctcttgtca gacctcgatc ctgccgatca tggactagcc actcacaaag tccttcaaga      2880
     cgatgagcac cttaaagtat taggagtcat ttggaatccg aagctcgatg cgtttcaact      2940
     tcgcgtatct ctcccgtctt tgccgggaaa aaccaaaaga actgttctct cgactatcgc      3000
     taagtttttc gatccgatgg gatgggctac tcccgtcatc atcggtgcga aaatattcat      3060
     gcaacgattg tggtcgctcc aatgtcagtg ggacgatgaa attccatgtg aacatttcga      3120
     ctactgggca aattatcacc accaattacc gtgtctcgag gctctcagta ttccgcgctg      3180
     gacgacgcat ggatcccata ctctgcacag cgcacttcat ggcttttccg atgcctcaac      3240
     tatggccttt gcagcagttg tttaccttcg cgttgttaat gtcgatggct caattaccat      3300
     ctctcttctc atcgcaaaat cgaaagtggc acctcttaaa acgatcagcg ttccccgatt      3360
     ggaattgtca gctgcgcttc ttctcgctcg gttagttaat tatgcgcgtt ctgctcttca      3420
     acttccgagc atcgaatgtc actgttggac cgactcaacg atcacactcg cttggctgag      3480
     gcagtctccg tctcgatgga aaactttcgt tgccaatcgc gtttcgatcg ttcagtcctt      3540
     gcttcctgga atttattggc gtcatgtccc aactcaggac aatcctgccg attgcgcttc      3600
     tcgcggtcta gctcccgatg ctctcgcaaa ttataattta tggtgggcag gcccttcatg      3660
     gctttgtcaa tctccagagt cttggccgac tttcgatctc tcgataccat ctgataccac      3720
     ccttgaacag cgttctcaac cacctattca ctccttacat tcgacccctc gttggaatct      3780
     cgcatcacgt tattcctcgt agcctcgatt gctccgaatt accgcttacc tttaccgttt      3840
     tcttaatcga ctccgatcct ctaaaagcgc ctcgcctaca ccagcgagtc tgcttcccga      3900
     agagattcag aaagccaaac attactggct ccaggttatg cagtcagaga tgtttcctat      3960
     tgaaatctcg actttacaac ggcaacttcc gttaccaaaa accagttcct tatctgcact      4020
     caatccttat tttgacgctg acagacttct tcgtatcaga ggacggctcc gtcatgcatg      4080
     ccttccagaa gcgacaaaaa atccgctcgt attacgagca cacccattgt taattcttat      4140
     tattcagcat catcatctaa gaacgttaca tgctggtcct caattaacgc tcgcttcatt      4200
     acgtaatgaa ttttggatta tccgatctcg cgctaccgtc cgtgccgttc tgtatcagtg      4260
     cgtacaatgc actcgtgagc gcgctaaaaa acctgtcgaa ctcatgggcg atctaccgga      4320
     cgcgagagtt aaccgtgccg ctcgcgcatt tatacatacc ggcgttgatt acgctggacc      4380
     aatcgctgtc cgaaccgcgt cccggccgag gacacaaatc gcaaaaggct tatattacgt      4440
     tgttcgtatg cctgacgacc aaggctatac acttagaact tgtttccgat tatagttcgc      4500
     cgacctttat tgcggcgtac cagcgatttg tctcccgccg aggactaccg cagtccatgt      4560
     actcagacaa tggaacaaca tttcatggcg ctaaccgaga attgtccgaa gctcacgcaa      4620
     aagcaattcg cgatccaagt tttcgaaatc ggctcgctac cgatggaacc gcgtggcagt      4680
     tcctaccccc agccgcaccc catttcggcg gactgtggga ggccggtgtt cggagcgtga      4740
     aacaccacat aaagcgttgc ataggcctcc acacattaac ctttgaagaa atgaccacac      4800
     ttctttgccg cattgaagct tgcctaaatt cccgtccgat agctcccgtt tccgataatc      4860
     ctgatgatta tcacgcgtta acgcctggtc atttcttgat cggtacccct cttatcgctc      4920
     ccgccgaacc aagcgtgctc gatttaaaac gagaatcgat tgtcgcgttg gcaaaatgat      4980
     tcaaacgtct gacggaagag ttttggcggt catggtcaaa gcgattactt gcactccctt      5040
     caaacaaacg ccccaaaaaa tggcgcgtta tacagcgact ggctaaagtc ggccaaatag      5100
     tcctagtgcg caatccctta gccccgccaa gccaatggga acttggacga attatcgctt      5160
     gttatccggg agatgatggc ctgacgcgag ttgtcacggt caaaacttct cgttccgaat      5220
     ataaacgtcc gatcgtgaaa ctatgcttct tacctgtcgc gattaatacc gaagaattaa      5280
     aagattccgt catggcgggc ggaatctcgt ctttataagc gataccataa cgttctttgt      5340
     tagtgaaatc tcaaccggat accgatattc attgtacagc gtttatttca ttatgtattc      5400
     tatcgttgtc aaaaccattt ctaactcctt tcgaatgtat acattcgagg cgggcggta       5459
//
ID   BEL-14_LH-LTR repbase;    DNA;    INV; 366 BP.
XX
AC   ADOQ01006108;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_LH_;
KW   BEL-14_LH-I; BEL-14_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-366
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01006108; Positions   28126   28491.
XX
SQ   Sequence 366 BP; 103 A; 89 C; 74 G; 100 T; 0 other;
     tgttcaggaa taagtataat tttaaagtat atctcgtcaa attcgctgtt gatattctcg        60
     ttcgaaatct cactcattat tttgtcaaca cagaacgata cgcggcggtc gcgcgacgcg       120
     gatcgccggc gcgattcccc taaatgagcg ctccgcgcat tcgctctctt tccgcgagtg       180
     agtaggcttc cagacaccaa tcgatacaga tcgaaatact gttcgcctcg cttataacac       240
     cttacgtata actgtgactc ggataataaa gatttaattt aacgaataca agagggattc       300
     ttccgaaaat taccgccttg gtgtgcgagc ctttgataca aggttttacc aacgcaaacc       360
     gaaaca                                                                  366
//
ID   BEL-14_MoPha-I repbase;    DNA;    INV; 5586 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5586
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1140-1140 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..5280
FT                 /product="BEL-14_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAVRASAVDPSTSLEAELMLETQTELLGRIARTEENL
FT                 KRLGTSRLTKGTVESRLQTLESNWSKFQKNHDIIRAKFRQTLAEHEYFRSN
FT                 RLAAAEDMVVEQRGVLLDMLESLRTRGDDRSGHPSAVPSDGGSRRKPPHIE
FT                 LPHFSGHIEDWPAFRDLFGSILAQHPALTDVERLHYLKTRVQGEAEERIRN
FT                 LPTIGPNFQRAWAILEERYENKRVLVRSCLSAFTATPKMKGESVADLKRLV
FT                 HCMLRTAGNLESIGRKTAYDNDFFVHTVIEMLDARSRREWEDDASNSREPP
FT                 TYEDLREFLERRLRTVEALSSAKGEAGATTPAKPTTGSSRAVRSNLAQNQQ
FT                 RKGRCPACQKDHYVLQCSDFQKKTPAQRKEFVEGHQLCINCLGRHPLSECQ
FT                 SKKSCLACSARHHTTIHDAYSKASPPGDTTASSHHVQQHEERAAAVLLATA
FT                 RVRVTDRYGDQHTARALIDPGSELSLISETLSQRLRLPRLPASVSVYGVGG
FT                 QRTGATRGRVSLEMSSSTSTFTLRVSALVLPRISAYGTRVAATPDDWPHLR
FT                 DLSLADPDFRAGDPIDILLGADVYSTIIEDGLRKGGPRAPIAQRTALGWIL
FT                 SGVVDASALVATVSVHQCHLGDADLTELVRQFWHQEELPGGLPLLTAEEQQ
FT                 CEDFYATSHTRQPDGRYMVRLPVAPELPPLSGTRRAAERLIRCMEGRFRSD
FT                 PELRQLYHTFMGEYEQLSHMVACPPLDDASRRLCYLPHHGVLKGIPTARKI
FT                 RVVFNGSSRLPTGDSLNAYLSVGPNLLPALADVLLRWRQFRFVLAADVEKM
FT                 YRQILVHPEDRDLQRILWRSGASRDVQEYQLCTVTYGLACAPFLAIRTLRQ
FT                 LATDEETRFPHAAVALRRDTYMDDIMTGADTLAEAQSLRDELVGLCSAGGF
FT                 PLRKWAANSEKVLLGVPPDHRQIKDLRAWEADADHSALGLLWHPRRDYFSF
FT                 RVQPLATELVTKRSVLSQTARLFDPMGWLAPVVIAAKIIIQTLWLQHLEWD
FT                 QPVAPTEERSWRLILEELPLLEQLRVPRWLSTVRAGADLEIHGFADASERA
FT                 YAAAVYLRTPLAAGGRRVLLLQAKTKVAPVQPVSLPRLELCAATLLAKLTA
FT                 HVTEVMGLRGAPLYLWSDSTVTLAWIQGHPSRWKTFVANRVAEIQRVLPEG
FT                 RWRHVAGCENPADCASRGLTPRELLSHSLWWTGPTWLSQDGPGPINQPPMV
FT                 ESPPEERTRTHLTTASTEESEILRAFSRLSRLLRVTAWCARWLVACRKRPP
FT                 APTAGLAPLELEEAQQRWIRVVQAVWFSEERRALIRGAGVPNRSALARLSP
FT                 FVDDQGIIRVGGRLKHAILSPDERHPVILPRGSHLTALVIRAYHLETMHGG
FT                 VQLTLGLVRQRFWIPGGRQEVRRHIHRCVTCVRWRAASPHPLMGQLPPSRV
FT                 TVSRPFTHTGVDYAGPILVRTAPGRGHKAHKAFMAIFVCFSSRAVHLELVS
FT                 DYSTEAFLAAFYRFVSRRGLCRTLHSDRGTNFVGADAQLRALFRAAVTENP
FT                 SLVDALATKGVEWKFNPPAAPHFGGLWEAAVKSVKHHLRRVIGEATLTFEE
FT                 LSTVLSQIEACLNSRPLQALRDDPEDLEALTPGHILTGAALKVVPAPSLAS
FT                 EPSNRLTRWRCLQKMRDDFWRRWSAEYLHALAVRPKWCRPEPNPLVGDLCL
FT                 LRGEALPPCRWPLARIVGVHPGDDGMVRVVTVRTATTTLKRPVVKIVPLPR
FT                 HDCDVVQQDEDTASQPGPSTE"
XX
SQ   Sequence 5586 BP; 1013 A; 1837 C; 1686 G; 1050 T; 0 other;
     ttctggtcct tcgagccgga tcgcgtgtga acgtccatct gtgcgtgatc ctatccaatg        60
     gccgtgcgcg cttccgccgt tgaccccagc acgagtctgg aggccgaatt gatgctggag       120
     acacaaaccg agctgctggg gcgcatcgcc cgtaccgagg agaacctgaa aagattggga       180
     acgtcaaggc tcacaaaagg tacagtggaa tctcgccttc aaacccttga gtcgaactgg       240
     tcgaagttcc aaaagaacca cgacataatt cgcgccaagt tccgacaaac ccttgcggaa       300
     catgagtact tccgatccaa tcgcctcgct gccgccgaag atatggtcgt cgagcagcgc       360
     ggagtcctcc tggacatgct cgagtctctc cgtacacgtg gggacgatcg gtcgggccac       420
     ccctccgccg taccgtcgga cggcgggtcc cggcggaagc ctccgcacat cgagcttccg       480
     catttctccg gtcacatcga agattggccg gccttccgag acctgttcgg ctccatactg       540
     gctcagcatc cggcattgac cgacgtggaa cgcctgcatt acctaaaaac cagagtgcag       600
     ggtgaagcgg aggaacgtat ccgaaatttg cctaccatcg gtccgaactt ccagcgagcg       660
     tgggctatcc tcgaggaacg atacgaaaac aagcgcgtcc tagtgcgctc gtgcctttcc       720
     gccttcaccg cgaccccgaa gatgaagggc gagtccgtgg cagacttaaa gcgcctggtc       780
     cactgcatgc tgcgaaccgc gggaaatttg gagagcatcg gccggaaaac cgcgtacgac       840
     aacgacttct tcgtgcacac tgtaatcgag atgctggatg ctaggtcccg ccgagagtgg       900
     gaggatgacg cgagcaattc ccgggaacca ccgacatacg aggacctccg cgagttcctc       960
     gagcgccgcc tgcgaacggt ggaggcgctc agttccgcga agggcgaggc tggagccacg      1020
     acacccgcca agccgacgac cgggtcctct cgagcggttc gctcgaacct ggcgcagaac      1080
     caacaaagga agggccgctg tcctgcgtgc cagaaggacc attacgtctt gcagtgcagc      1140
     gacttccaga agaagacgcc cgcccagagg aaagagtttg tggagggcca ccagttgtgc      1200
     atcaactgtc tgggtcggca ccccttgtcg gagtgccagt cgaagaagtc atgcttggcg      1260
     tgcagcgcgc gacaccacac taccatccac gacgcatact ccaaggccag ccctccgggt      1320
     gacaccaccg cgtcgtctca ccacgtacaa caacatgagg agagagcagc tgcagtcttg      1380
     ctggccacag cccgtgtcag ggtgaccgac aggtacggcg atcaacacac tgcccgcgcg      1440
     ctgatcgacc ctgggtccga gctctcactc atcagcgaga ccctctcgca aaggctacgt      1500
     ctcccacgcc tgccagcctc ggtctccgta tacggtgttg gcggccagcg gaccggagcc      1560
     acccgcggac gcgtcagcct ggaaatgagc tcatccacct ctacctttac tttgcgcgtc      1620
     tcggccctcg ttcttccgcg tatctcggcg tatggaactc gcgtcgcggc gaccccggat      1680
     gactggcccc atcttcgcga cttgagtcta gccgaccccg acttccgcgc tggcgatcca      1740
     atcgacatcc tcctgggcgc cgacgtatac tccaccatta tcgaggacgg tctgcgcaag      1800
     ggcggccccc gagctccgat tgcccagcgc accgccctgg gctggatcct ttccggtgtg      1860
     gtcgacgcct ccgcgctcgt cgctaccgtg tcggttcacc agtgccactt gggcgacgct      1920
     gaccttaccg agctcgtgcg gcaattttgg catcaggagg agcttcccgg tgggctgcca      1980
     cttctcacgg cggaggagca gcagtgcgag gacttttacg ccacctctca cacccgccag      2040
     cctgacggtc ggtacatggt gcgcctcccg gtggcccccg agttgccccc gctgagcggg      2100
     acccgtcgcg ccgccgagcg cctgatccgc tgcatggagg gccgcttccg gagcgacccc      2160
     gaactgcgcc aactctacca caccttcatg ggtgaatatg agcagttgag ccatatggtg      2220
     gcgtgcccgc cactggacga cgcgtcgagg agactctgct acctgcctca ccacggtgtc      2280
     ctcaagggga tcccgactgc gaggaagatt cgagtggtct tcaatggctc ctcccgcttg      2340
     ccgacaggcg actccctcaa cgcctacctc tccgttggtc cgaacctcct gccggcactg      2400
     gccgacgtgc tattgagatg gcgccagttc cggtttgtgc tggctgccga tgtggagaaa      2460
     atgtaccgcc agatcctggt gcatcctgag gaccgagacc tgcaaaggat tttatggcga      2520
     tcaggcgcct cccgggatgt gcaagaatat caactgtgca ccgttactta cggtctggcg      2580
     tgcgcgccct ttctcgccat ccggacgctc cgacagctgg ccaccgacga ggagacgcgc      2640
     ttcccgcacg ccgctgtcgc gctccggcgc gacacttaca tggacgacat catgacggga      2700
     gcggacactc ttgccgaggc gcaatccttg agagacgagc tggtgggact ctgcagcgcc      2760
     gggggtttcc ccctccgcaa gtgggcggct aactctgaaa aggtcttgct gggcgttccc      2820
     cccgaccatc gccaaattaa ggacctccgc gcctgggaag ccgacgctga ccattcggcc      2880
     ttggggctgt tgtggcatcc gcgacgggac tatttcagct tccgggttca acctttggca      2940
     acggagctcg tgaccaagcg ctccgtgcta tcgcagactg cccggctgtt cgaccccatg      3000
     ggatggctgg cgccagtggt aatcgcggcc aagatcatca tccagacgct gtggctgcaa      3060
     cacctcgagt gggaccaacc ggtggcgccg acggaggagc ggtcgtggcg gctcatcctg      3120
     gaggagttgc ccctgctgga gcagctgcgc gtgccgcgtt ggctgtccac cgtccgtgcc      3180
     ggcgcggacc tggagatcca cggtttcgcc gacgcctcgg aaagagccta cgctgcggcg      3240
     gtgtatcttc gaacgccgct cgcggcgggc ggtcggcgcg ttcttttgtt gcaggctaaa      3300
     accaaggtgg cccccgtgca gccggtgtca ctcccccgtc tcgagctgtg cgcggcgacg      3360
     ctcctggcca agctgacggc gcacgtgacg gaagtcatgg gacttcgcgg cgccccactc      3420
     tatctgtggt ccgattccac ggtgactttg gcctggatcc agggacaccc ctcccggtgg      3480
     aagaccttcg tcgccaaccg cgtagccgag atccagcggg tccttccgga gggtcggtgg      3540
     cgacacgtgg ccggatgcga gaaccctgcg gattgtgcct cccggggtct aactccccgg      3600
     gaactcctct cgcattcact gtggtggacc ggaccgactt ggctctccca ggacggtccg      3660
     ggtccgatta accagccgcc gatggtggag tcgccgccgg aggaaaggac caggacccac      3720
     ctgacgaccg cctcgaccga ggagtctgag atactgcgcg ccttctcccg actgtcgcga      3780
     ctgctgcggg tgaccgcgtg gtgcgctcgc tggctggtcg catgccgcaa gcgacctcct      3840
     gcgcccactg ccgggctcgc cccgttggag cttgaggagg cgcaacagcg ttggatccgg      3900
     gtcgtgcagg cggtctggtt ctccgaggaa cggcgtgccc tgatcagggg agcgggggtg      3960
     ccgaaccgca gcgctctcgc ccgactgagc ccctttgtgg acgaccaggg catcattagg      4020
     gttggcgggc ggctcaaaca tgccatcttg agcccggacg agcgtcaccc ggtgatccta      4080
     cctagagggt cgcacctgac tgctctcgtc attcgcgcct accacctgga gaccatgcac      4140
     ggcggggtcc agctcaccct gggcctggtt cggcaacgtt tctggatccc tggaggccga      4200
     caggaggtca ggcgccacat ccaccgttgc gtgacttgcg tgcgatggcg ggcggcttca      4260
     ccgcacccct tgatggggca gctcccccct tcgcgcgtca ccgtctctcg accgttcacg      4320
     catacggggg tggactacgc gggacccatc ctggtccgca ctgcgccggg ccgtggacac      4380
     aaagctcaca aggcctttat ggctatcttt gtgtgctttt cctcgcgagc cgtgcatctt      4440
     gagctggtct cggattactc caccgaggcc ttcttggcgg ccttctaccg cttcgtttct      4500
     cgtagagggt tgtgccgaac cttgcacagc gatcgaggca ccaattttgt aggagccgac      4560
     gcccagctgc gagccttatt cagagccgcc gtcacggaaa acccgagcct cgtggacgcc      4620
     ctggcaacca agggcgtgga gtggaagttc aacccccctg ctgctcctca ctttgggggc      4680
     ctgtgggagg ccgccgtaaa atcggttaag catcacctca gacgcgttat aggagaagct      4740
     acgcttacct tcgaagagct gagcactgtc ctgtcccaga tcgaagcctg tctaaactct      4800
     cgcccgttac aggcactccg cgatgatcct gaggacttgg aggccttgac tcctggccat      4860
     atcttaacgg gagccgcgct caaggttgtg ccggcgccct cactggcctc ggagccgtcc      4920
     aatcgtctca cccgatggcg atgcctacaa aaaatgcgag acgatttctg gcgcagatgg      4980
     tcggccgaat acttacacgc gctcgccgtg cgacccaagt ggtgccggcc ggagccaaat      5040
     cctctcgtgg gcgatctgtg tctgctccga ggagaggccc tcccaccatg ccgatggccg      5100
     ttggcacgca tcgtcggggt ccatccgggt gacgacggga tggtgagggt ggtcacagtg      5160
     cgtacggcca ccacaacact caagcgaccg gtggtcaaga tcgtgccgtt gccgcgtcac      5220
     gattgcgacg tcgtacaaca ggatgaggat accgcgagtc agcccggacc ttcgaccgag      5280
     tagctcgcga ctcgccactt acctgcacct cggacggcgg gcggcacatc cccgggctcg      5340
     accgtagtaa agggaccatt ggagctcact tcactgccac tacacacgcg accatgcgcg      5400
     atcatgtttt cattcgcgcc cacgtgttgt gctggaagct ttaaggctag ctcagcgtcg      5460
     acgatccgcg attcgcgacg tactaccgcg ttcataaacc ccccgcgtcc tgcggtccgc      5520
     ggtcgggcca atcacggttc agcattaagc gtctatcgtt agcactccct aacgaggcgg      5580
     gcggca                                                                 5586
//
ID   BEL-14_MoPha-LTR repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-616
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1080-1080 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 616 BP; 119 A; 181 C; 153 G; 163 T; 0 other;
     tgttccgtat caacggaatc cttattaaca accgcgcacg catctggaac gtgacggcgg        60
     tggatctctc gatcgctttg ttttcgcgag cgcgtccgtt gacaccggag tttcggtcgg       120
     cgcccgaagg gcagccgcat ttgataacaa cattgcctta tatgggcatt ttttgggcaa       180
     cgaaaactat cttgcattgg tggtggcgac agcgaaccaa tcacgactga catcccaaag       240
     accgttgtca tctcctcggg cgatagcggg cacttttcgc gccctgccgc cagaatctgc       300
     cgagtcggta ccgcgaacgg gtcgctgtcg ccactaattt tccgtacgtc tcgcgccttt       360
     ttctctctcc gcgctacgcc gcgcaatctc agcgcccgcg attttccggc gctcgccttc       420
     tgcgcgttcc gcgtctagcg ggcaccgcga cgcgctcgtt agtttaatgg tgtgtatccg       480
     gcaactggtt atatgtatat atttttttgt tgtgtgaaac tctttatcat taaagtaaag       540
     tgcaagtgaa ctcagtctga gtcattttcc cgccattccg ccaacctcgc tacagcgaat       600
     cccacggtcg cgaaca                                                       616
//
ID   BEL-14_SI-I repbase;    DNA;    INV; 5649 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SI_;
KW   BEL-14_SI-LTR; BEL-14_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5649
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 427-427 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4361-4939] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..1415
FT                 /product="BEL-14_SI-I_3p"
FT                 /translation="MANPWEDLVQAQHDLFGLLSQSYENMRKSGEANITLG
FT                 LLEARLQTLESYWGKFVTRHEQLLMEYGDDLEDHEYLTDDLMLKADISFHV
FT                 QKGKYLDDMRTMRGPGHAVFAAPVAAPAATSAAAVAAAAPTIAAAAPVVAR
FT                 LPRISILQFSGQYEVWPAFCDLFSSLVISNQSATLVEKLHYLKTSLKGEAE
FT                 QVTRQLSTTEANFERTWRALKEHYENKRLLVRSYISRLLSLLKMKGESAAD
FT                 LRKIYHCVQTTVGSLEGIGRPLTRSDDLCVQLITGLLDSVSRRKWETQLSS
FT                 TAEPSSLDELLVFINQRMRTLESLTTSKSEARRRLLQVPLVKNRPYRCVRK
FT                 EASEAAAFFAIRTTTYGSANRISARRLSSGSSSRVPMNCVSTASASTSLPI
FT                 VRRKNRACRAMSVITQPCTTHTPLSRL"
FT   CDS           2670..3662
FT                 /product="BEL-14_SI-I_4p"
FT                 /translation="MRTLLQLADDEAENYPLGARALRGEVYMNDILTGAST
FT                 LEEACELQRQLTGLCMAGGFPLRKWSANDAAILADVPAEHRMQRDLRDWRP
FT                 HETQGTLGLRWHPATDEFSFAVPEATLTDVTKRSVLSFTTRLFDPLGWLDP
FT                 VVVRAKIAFQATWLLGLAWDDPLDEAAARQWHAYAEELPRLEYIRVPRWLD
FT                 VAWPANAAEIHGFADASERAYAAVLYIRTSVGDSWRTNLVAAKTKVAPLKT
FT                 VSLPRLELCAAALLAKLTSHVCSALSLDRLRIHLWSDSTVALGWIRGHPTR
FT                 WKTFVANRVADIQTRVPDALWHHVPGLETAPLVVCPPES"
FT   CDS           3521..5311
FT                 /product="BEL-14_SI-I_2p"
FT                 /translation="MDTRSPDQMEDLRSQPRGRYSNQGPGRSVAPRAWARD
FT                 CASRGLSPRELVEYSLWWQGPPWLRMAPSTWPCDAAMPDEDGWPEAKLSIH
FT                 AARTAPGLVEEPDELRRFLSLRRLLRVTAWCRRWLLRGPADGPEVTVNELE
FT                 EARLIWIRQVQAGYYRGDLRALQQHQPLPSSSSLLRLYPFLDSQGLLRVGD
FT                 RIKHSLLAYDKQHPVILPGDSHLTRLVVETSHRCSLHGGVQMTLGAIRQRY
FT                 WIPCGRAVVKLWLRRCVTCVRWWAAIPQQLMGSLPRDRVTPARPFFNTGVD
FT                 YAGPIQLRTSRGRGQRSYKAYIAVFVCLTTQAVHLEAVSDYTADAFLAALR
FT                 RFVSRRGLCHTIRSDCGTNFVGADAQLRAFFTEGSQELRRIVGRLATEQIQ
FT                 WRFNPPSAPHFGGIWEAAVKSLKHHLRRVLGDSTLTFEEMSTLLAQVEACL
FT                 NSRPLQALSDDPEDLSALTPGHFLVGGPLTALPEPSLTELPVNRLTRWQLL
FT                 QQMRDHFWERWSREYLHSLVHRPKWLKGVADYRVGRLCLIRSETTPPTRWP
FT                 LARIVQVHPGEDGLIRVVTVRTAASTFTRPIVKIVLLPVCDNEENGKPLD"
XX
SQ   Sequence 5649 BP; 1086 A; 1655 C; 1657 G; 1250 T; 1 other;
     gtctctcgag tttcaagtct gagcgcgaac acttgctggt ccttcgagcc ggatttccgg        60
     gttgccggtg ccggattttt tgagtgagtg ctgtgacgtg actgtgatat tcgttgacta       120
     tcgttcagtg agcttacctc cgcaagataa aaatggctaa tccttgggaa gacctcgtgc       180
     aagctcagca tgacctgttc ggtcttctct cgcaatccta cgaaaacatg aggaagtctg       240
     gagaagccaa cataacgctc gggctactgg aagcccgcct ccagaccttg gagagttatt       300
     ggggcaagtt cgtcactcga catgagcagc tactcatgga gtacggagac gaccttgagg       360
     accacgagta cttgacggac gaccttatgc tcaaggccga tatatccttc cacgtacaga       420
     agggcaagta ccttgacgat atgcgcacga tgcgcggtcc gggccatgcg gtattcgccg       480
     ctcccgtcgc agctcccgct gccacgtctg ctgccgccgt cgcggccgct gctccaacca       540
     tcgcggcagc ggctcccgtc gttgcgaggt tgcctcgcat ttcaatacta cagttctccg       600
     gtcagtacga agtctggcca gccttttgtg accttttttc ttcgctggtt attagcaatc       660
     aatccgccac gctggttgag aagctccatt acttgaaaac cagcctgaag ggagaggctg       720
     agcaagttac tcgccagcta tctacgactg aagccaactt cgagcgtacc tggcgagcat       780
     tgaaggagca ttacgagaac aagaggctcc tggtgaggtc atacatctca cgacttctgt       840
     cactacttaa gatgaagggt gagtcggccg ctgatctccg caaaatatat cattgcgtac       900
     agacaaccgt cgggtcttta gaggggatcg gtcgcccctt gacgcgtagt gatgaccttt       960
     gcgtgcaatt aattacgggc ctcctcgatt cggtgtcacg gcggaaatgg gaaacgcaac      1020
     ttagtagtac ggcggaaccg tcgtccctag acgagttgct cgtgttcatc aatcagagga      1080
     tgcggactct cgagtcgctg actacctcga agagtgaggc tcgacgaaga cttcttcaag      1140
     tgcccctcgt caaaaacaga ccttacaggt gcgtacgcaa agaagccagc gaggccgctg      1200
     ctttctttgc aatcaggacc actacgtacg gcagtgcgaa tcgtatctca gcaagacggc      1260
     tgtcgagcgg aagcagttcg cgggttccaa tgaattgtgt gtcaactgcc tcagcaagca      1320
     caagcttgcc gattgtccgt cgaaaaaacc gtgcctgtcg tgcaatgagc gtcatcactc      1380
     aaccttgcac gacgcatact ccgctgtcgc ggttgtaaat actcatcttg cgagattgaa      1440
     gaaaaaggcc caaatggcca tgctgctgca aacagctcgc gtccgagtga aggatcgctg      1500
     cggtgtcgac cacgtcgtgc gagcactggt cgacacggga gcggagatgt cgttggtgac      1560
     ggagtcactg gctcaacgac tgcgattgcc gcgctcgcga tcggccttcg ccgtcttcgg      1620
     ggtctgtggg aagaagtccg gggtatcgcg cagtctcgtc gaactgcagg tatcgccttg      1680
     agagggcggt ccgtcgttgc tggtctctgc gttaattctt ccgcgaataa cgttgtacga      1740
     gagcgtcttc cgggcggacc agagcgcctg gtcacacttg aacggtatca ccctcgccga      1800
     cccggagttt ttagagttag acccggtgga catccttcta ggagttgatg tttacagcac      1860
     catcatccaa acgggagcaa ggctgggcga gcgtggccag cctgctgcac aacttacggc      1920
     gctgggttgg ttagtctccg gaccagtcgg tccagcaggg tcttccgacc gcacactgtc      1980
     cctgcaatgc aggatcgaga aggacctttc cagtctggtg aggaacttct ggcagctgga      2040
     tgacctgccc acaggtcctg cgcccctcat tccctccgag caagagtgtg aggatctcta      2100
     ccgacgttca cataaccgac agtcggatgg ccgttacgtc gtgcggctgc cagtggttgc      2160
     ccctctgtcc gacctggcag ccaccaagca tgccgcttcc cgtgctctga cgggcacgga      2220
     gaagcaattg gcacgagacg accgactgcg tcaaatgtat ttggacttca tgaggcagta      2280
     tgaagactta ggccacatga cgccggtgca aactgaccga gatgccgggg atcgtgtgag      2340
     ctacctgcct caccacgggg tcctgcggga ggccagttcc actacgaagc tgcgtgtggt      2400
     cttcaatggt tctacgacgg tcctgtccgg cgattctctc aaccggagct ttctggtggg      2460
     ccagaacctg ctgcctccac tcgccgacgt tctcctgagg tggcggcttc ctcgctacgt      2520
     ccttgccaca gacatagaaa aaatgtaccg gctgatcctg gtccaccctg aggaccggga      2580
     tcttcagcgc atcctgtggc gataccatcc ccaggacgag atgatggagt atcgcctaaa      2640
     caccgttggc gtgcgctcca ttcttggcga tgcgcactct tctccagctg gccgacgacg      2700
     aggctgagaa ctacccccta ggagctcgag cacttcgtgg ggaagtttac atgaacgata      2760
     tcttaaccgg cgcctctacc ttggaggagg cgtgcgagct gcaacggcag ctgactggat      2820
     tgtgcatggc gggcggcttt cccctacgca agtggtcggc aaacgatgca gctatcttag      2880
     ctgacgttcc tgcggagcac cggatgcagc gggaccttcg ggattggcga ccacacgaaa      2940
     cgcaagggac tctgggtctg cggtggcatc cagccactga tgagttctcc ttcgccgttc      3000
     cggaggccac gttgactgac gtcaccaaga gatcggtgct ctcatttacc acacgcctct      3060
     ttgatcccct cggttggctg gatcctgtgg tggtgagagc aaaaatcgcc tttcaggcta      3120
     cctggctgct gggattagcg tgggacgacc cgctggacga agctgccgct cgacagtggc      3180
     atgcctacgc ggaggagctt cctcggctcg aatatatccg agttcctcgc tggttggacg      3240
     tcgcatggcc ggccaatgct gcggaaatcc atggctttgc cgacgcttct gagcgtgcct      3300
     acgcggcggt gctatacata aggaccagcg tcggcgactc ttggcggacg aatctggtgg      3360
     cggccaagac caaggtcgct cctctgaaaa cggtttcgct gcctcggttg gagctgtgcg      3420
     ccgccgctct cctggctaag ctcacctctc atgtttgttc cgcgctcagc ctggatcggc      3480
     ttcggatcca cctgtggtcg gactccacgg ttgccttggg atggatacgc ggtcacccga      3540
     ccagatggaa gaccttcgta gccaaccgcg tggccgatat tcaaaccagg gtcccggacg      3600
     ctctgtggca ccacgtgcct gggctcgaga ctgcgcctct cgtggtttgt ccccccgaga      3660
     gctagtggag tattctctct ggtggcaggg gccgccgtgg ctccggatgg ctccttcgac      3720
     atggccctgc gatgctgcca tgcccgacga ggatggctgg ccggaggcaa agctatcgat      3780
     ccatgctgcc agaactgcgc ccggtctcgt ggaggaacct gacgagctcc gacgattctt      3840
     gtcactccgt cggctgctgc gtgtgaccgc ctggtgtcgt agatggcttc tccgcggacc      3900
     tgccgacggg cccgaggtga cggtgaacga actggaggag gccaggctga tctggatccg      3960
     gcaagtccag gctggatatt acaggggcga cttacgagct cttcagcaac accaacctct      4020
     accctcttcc agttcacttt tacgattata tccattttta gattctcaag gccttttgcg      4080
     cgtgggtgac cgaattaagc actctctcct ggcgtacgat aagcaacatc cggtcattct      4140
     cccaggcgat tctcacctga cacgtctggt agtggagact agccaccgct gttctctgca      4200
     cggcggggtc cagatgactc ttggagcgat ccgacagcgc tactggatcc cgtgcggaag      4260
     agccgttgtc aagctgtggt tgcgtcgttg cgttacctgc gtgcggtggt gggcggccat      4320
     tccgcagcag ctgatgggga gtctgccgcg ggatcgagtc actcccgcgc ggcctttctt      4380
     caacacgggc gtggactacg ccgggcccat tcagctgcgg actagtaggg gacgtggcca      4440
     gcgctcgtac aaggcatata tcgccgtgtt tgtttgcctg actactcaag cggtccatct      4500
     cgaggcggtg tcggactaca ccgccgacgc gttcctggcc gctttgcggc ggtttgtatc      4560
     gcgtcgcggt ctttgtcaca cgatccgaag tgactgcggg acgaacttcg tcggcgccga      4620
     cgcccagttg cgggccttct tcaccgaggg cagccaggag ctgcgccgga tcgtcggtcg      4680
     actggcgacg gagcagattc agtggaggtt caatcctccc tcggcaccgc acttcggcgg      4740
     tatttgggag gccgcggtga aatcactgaa gcaccacctg cggcgagtcc tgggtgactc      4800
     caccttgacc ttcgaggaga tgagcaccct cctcgctcag gtggaagctt gcctaaattc      4860
     tcgcccgctc caggcgttgt ccgacgatcc cgaggacttg tcggccttga ctcccggcca      4920
     cttcctggtg gggggaccgc tgacggcctt gcctgagcca tcactgacag agctgcctgt      4980
     caaccgtctg actcgctggc agctcctnca gcagatgcgc gatcacttct gggagcgctg      5040
     gtcccgcgag tacctgcact ctctcgtcca tcgacctaag tggctaaagg gagtggccga      5100
     ctaccgcgtg ggacgcctgt gcctcatccg gagcgagacc acgccgccta cgcgctggcc      5160
     gctcgcgcgc atcgtccaag ttcatcccgg tgaggatgga ctaattcgcg tggtcaccgt      5220
     ccggacagcg gcgtcgacat tcacgcgtcc gatcgtcaag atcgtcctgc tgccagtttg      5280
     cgacaacgag gagaatggga agccgcttga ctaacggttc aggcgcctcc cccgcggtgc      5340
     atgaatcggc gattgcacct gtctaggata ccagcgcatt aagtgttaca tagactataa      5400
     tagagtttag ctccttcctt tgttaacgcc tctattcttt atacgcgact cgccatgact      5460
     accgcgtgta tgtgagtgag atttatcgct ttcctataca taaaacttca gcgattcgcg      5520
     ctgtccgctg cgccttgcga gctcctcgtc agggagattg tagtgccttg cgggtaaccg      5580
     gcgcggaggg accccaaggc tcgacctggg catgtcgccc gaaaaatgat tcgggcgagg      5640
     cgggcggga                                                              5649
//
ID   BEL-14_SI-LTR repbase;    DNA;    INV; 650 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SI_;
KW   BEL-14_SI-I; BEL-14_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-650
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 428-428 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 650 BP; 128 A; 170 C; 210 G; 138 T; 4 other;
     tgttcgggat ggcgcgagag acggggacgg ggtgcgaggc gttgtctctt ttcccgattt        60
     cgcgggagac cgacgttcgc gagngggaag cgaaggccgg ccgtcgttag gcgatgacac       120
     ggccgcgagc gcgaacatgc gctcgngcgt ggcaaacggc gagcgggagc gtgcgctcgg       180
     gccgtgctgg attgccagcn aacgtagcga caaatattga cgccttcggn attcggcgat       240
     ccttccggaa agactccgga gagaaaccgg aatgtcgtcg acgatctctc gttttcccgc       300
     cggaatcttt ccggaaggat cgccgtcttt ataaagcgac gagacgcgag acgcggtcgc       360
     ggtcgcaatc cgagaatctc gagagcagat agtacgcgaa agttagagcg cgtgaacttt       420
     gaaacggctc gcttcccttg tcggactttg atcgggttag taccgcattg gaaaggcgtc       480
     gatgcgtgcg tgagcattgt gtccgttcag agtgcggtgg gctagttaca gtccgagcgc       540
     ggcaatctcc gggttaagaa gagaacacat tcgcgtcgac tcatgctttc tctttgtcgg       600
     gcagtcgcct aaaccgtctc cgtctcaata cttcgtttcg ccgtctcaca                  650
//
ID   BEL-14_SiCu-I repbase;    DNA;    INV; 5900 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5900
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4988-4988 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..5871
FT                 /product="BEL-14_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MDTGEKDEKQQDLRRSSRINLGKSPSRFGNPLGPSSS
FT                 FFTSTTIKAADGTPMKRTTMAVPLSAVVKKNTEDGKSITSHGSGQSLVDLL
FT                 DEEIAKLEKTVNSKVDLLQSLVKMRDEQKEAVQAEIEADQKLSDYEDDDAG
FT                 AEEIRLAMEYLKADPIFSEDEEEGREEKEQFHGKYTPPSAINVGTRGHYFE
FT                 TPLNPGQGRRSSMRPRDPPPPPPKFGGAVKKEKADPTEAGEAKKKSVGMFA
FT                 GNWNPSHDEKGGFPEERHEAASGGGKSFGGSSSTYGGKTGAGSRRRPLPPQ
FT                 PSTSVDDLAGALINALQLQNRRTEQFVARQSSSSSLPQFSGNPLEWPLFYH
FT                 HFNQSTQDCGFSPQQNMARLEKALRGEARSTVRSLMIVPTNTQAVMQRLEQ
FT                 RFGRPEIVIQSLVEIARKTPSLKEGKLSSILDYSNAVNNLVTTVETLQEPS
FT                 YLENPQLLQELVDKLPDVFKIQWGMTAVKNRGRGNLKKFAEWIDTMSDAAS
FT                 MVTVPKVSFRESKREENLHAAAEEPPSRPPRTCHCCGKEGHNVMDCDQFRK
FT                 KTLQERRDLVKEKNLCFRCMRSGHSVKICRSKVTCNRDGCGRRHHSLLHDP
FT                 EQGSKKEAKEEKIKDLNATMESLSSSTLLRILCVTLYGPAGKLTVNALLDE
FT                 GSTVTLMSADVAKKLGLSGGVDPLRIKWTNGTSQEDNSSRKVDCFIGPVGA
FT                 KEKFKMKRIRTVRNLTLPNQRTDLEDVIKKYPHLQKTKFKYLPGEKPVILI
FT                 GQPHIKFTVARQVIEDDDDSPILTHTKLGWVMHGPSREDGGDEATFSCIHE
FT                 SDDDILHNLVKESFALESLGVAPLAAARSREDKLAEDKMKQVTRKVDGRWE
FT                 TGLLWRKEPVVLPSSRAVAEKRLRSIERKLARNDDIRQQYHDRIHHYLEKG
FT                 YARKLTTEELAAKSDVEWFLPHFDTRHPNKPAKIRIVFDAASRSNGVSLND
FT                 YLLTGPDLLVSLPGILVKFRQKKIAISGDITEMFHQVRIRKEDCPAQRFLW
FT                 REGGEEEASVFQLEVMMFGSVCSPYCAQYAKNANAIEYQMEFPEAAEAITK
FT                 FHYMDDWLQSVDTEQEAIKLVRDVTEVHRRGGMEIGKWISNSKKLLEDVKG
FT                 NTEPSQTKDLAEWSEVQTERALGLHWIPEEDCFTFRVNLKRAGEGIATGEK
FT                 IPTKREVLRLIMLVWDPLGFIGHYLVKAKILMQEVWKSKIGWDDEIPSSML
FT                 KKWTKWIRQLPQLAGIRIPRCYSPICGTAKNVSLHIFSDSSEAAGCCLSYL
FT                 RVSDENDEVTVSFIMSRSRVAPVKPCSIPRLELNAALLASRMGKFILSELE
FT                 IKVHKVYYWTDSMTVLRWIRSEARRFNTFVAGRVGELQENSEVXQWNWVPT
FT                 AENPADDGTREGKXDLSPXSRWWNGPEFLVKEADCWPVETSQVKFEVDEDL
FT                 ELRKQFVAVVVEVPKFSLPDLGRFSKFPRIVRATAWILKFIQLKLKKSAGP
FT                 LDTDKAKLLLFRRSQWESWPDEMQLLSDGRGVPKSSPLFTLSPVLDEKGVL
FT                 RMKSRLTGADENLKFPIILHPKNGLTLLLIRHHHEKFGHAGEDLIRNELRQ
FT                 TCWIPNLRAAVRKVNRACIICRKKRIQPQPPEMGALPDFRVQPQPRAFWIC
FT                 GMDYFGPMEVTIGRRHEKRYGVLFTCMNTRAVHLEIAHSLTTDSCIMAIRR
FT                 MISRRGQPCQMFSDNGTNLRGAEKELRKALTELDQDTLKSECSSKGIMWNF
FT                 IPPAAAHMGGSWERLVRSVKTALSVILRSRAPKEEVLETVFAEAEAIVNSR
FT                 PLTDVPVDVESPEALTPFHFLIGTSSTSRPPGKFEEKEICLRKQWRIAQAL
FT                 SDQFWKRWVREYLPTLQRRAKWHGSRPSLAVGDIVVVLDESLKRNTWPLGV
FT                 IIHVFPGNDGVVRVAEVKTATGIYRRPVTKLGKLDVRKAEPQD"
XX
SQ   Sequence 5900 BP; 1690 A; 1337 C; 1653 G; 1215 T; 5 other;
     taattggtcc ttcgagtcac tcaacccgac gtggggacac agttaggacc tgaagaggtc        60
     acttgaggtc atcagcctgc tgtgaaggac aagacgtcac ttttctgaag cctggaatcc       120
     agaatggaca cgggggaaaa ggacgagaaa cagcaggacc tgcgtcgtag cagccgaatc       180
     aatcttggga agtcaccaag ccgctttgga aatccgttgg gaccttccag cagttttttc       240
     acaagcacaa ccattaaagc cgccgatggg acgcccatga agaggaccac catggctgtt       300
     cctctgtcag ctgttgttaa gaaaaataca gaggacggca aatcaattac ctctcatggg       360
     tctggtcaat ccctggtgga cttgcttgac gaagaaattg ccaaactgga aaaaacggtc       420
     aactccaagg tggacctgtt gcagtcgctt gtgaaaatga gggacgagca aaaggaagct       480
     gtgcaggcgg agatagaggc agaccagaaa ttgtcggact atgaagacga cgacgcagga       540
     gccgaagaga ttcggctggc gatggagtat ctgaaagctg atcccatttt ttcagaagac       600
     gaagaggaag gccgggaaga gaaggagcag tttcacggga agtatacccc accaagcgca       660
     attaacgttg gcactcgggg tcactacttc gaaaccccac tcaacccggg tcaaggaagg       720
     aggtcttcaa tgaggccaag agatccaccg ccgcctccac cgaagtttgg aggagcggtg       780
     aagaaagaaa aggctgatcc cacagaagcg ggtgaagcaa aaaagaagtc agttggcatg       840
     ttcgctggaa actggaatcc ttcacatgac gagaaaggag gatttccaga agaacgccat       900
     gaagccgcct ctggaggagg aaagtccttt ggaggtagca gcagcacata tggtgggaaa       960
     actggcgcgg gatcaagaag acgacccctc cctccgcagc caagtactag tgtcgatgac      1020
     ctggcaggag cactgatcaa tgccctgcaa ctccagaaca gaagaacaga acagtttgtt      1080
     gctcgtcaaa gttccagcag ttccctaccg cagttctcgg ggaacccgct ggaatggcca      1140
     ctgttctacc accactttaa ccagtcgaca caggattgtg gtttcagccc gcagcagaac      1200
     atggcgagac tggagaaggc gttacggggg gaagccagaa gtactgtacg atctctgatg      1260
     atcgtaccca ccaacactca agcagtaatg cagcgcctgg agcagcgttt tggacgcccg      1320
     gaaatcgtga ttcaatcgct ggtggagata gcaaggaaaa ccccatccct gaaggagggg      1380
     aagctatcat ccatacttga ttattcaaac gctgtgaata atctcgtgac gactgtggag      1440
     acgctccagg aacccagcta cctggaaaat cctcaattac tccaggagct ggtggacaag      1500
     ctgcctgacg tgttcaagat ccaatggggc atgacggcgg tgaagaacag aggtcgtgga      1560
     aacttgaaga aatttgcgga gtggatcgac accatgtctg acgcagccag catggttacc      1620
     gttccgaagg tcagcttccg tgagtcaaag cgggaggaaa atctacatgc tgcagcggag      1680
     gagcctccaa gcagaccacc acgtacctgc cactgttgcg gaaaagaggg tcacaatgtc      1740
     atggactgtg accagttccg gaaaaagaca ctccaagaga gacgggacct tgtgaaggag      1800
     aagaatcttt gcttcagatg tatgcggtcg ggtcacagcg tcaaaatctg tagatccaag      1860
     gtcacctgca acagagacgg atgtggaagg aggcaccatt ctttactcca cgatcctgag      1920
     caggggtcca agaaagaagc aaaggaggag aagatcaagg atctgaatgc caccatggaa      1980
     tccttgtcca gttccacgtt attacgcatt ttatgtgtaa cgttgtatgg tccagcaggc      2040
     aagttaactg tcaatgcctt gctggacgaa ggctccaccg tcactctgat gtcggctgat      2100
     gtggccaaga aactgggact gtctggaggt gtggatccac tacgcatcaa gtggaccaat      2160
     ggtacttcgc aagaagacaa ttcctccagg aaagtggact gcttcattgg accggtaggt      2220
     gcaaaagaaa aatttaaaat gaagaggata aggaccgtgc gcaatcttac gctgccaaac      2280
     cagaggaccg acctggagga cgtcatcaaa aagtatccgc atctccagaa gactaagttc      2340
     aagtacttgc ctggagagaa gcccgtaatc ctcatcggtc agccacacat taaattcact      2400
     gtggcgagac aagttataga agacgatgac gactccccca tcctaaccca cacaaaatta      2460
     ggatgggtaa tgcacggtcc tagcagagaa gacggaggcg atgaagcaac gttctcctgc      2520
     attcatgaga gcgacgatga tatcctccac aacctggtga aggagtcatt tgcacttgag      2580
     agtctggggg tggcaccttt ggcggcagca agatctcgag aagataaact ggcagaagac      2640
     aagatgaagc aggttaccag aaaagttgat gggcgctggg agaccggttt gctgtggaga      2700
     aaggagcctg tggtcctgcc aagtagccga gctgttgctg agaagaggct gaggagcata      2760
     gagagaaagc ttgccagaaa tgatgatatc cgacagcagt atcatgacag gattcatcat      2820
     tatctggaga agggctatgc tcggaagctg accacagaag aattggcagc gaagtcggat      2880
     gtggaatggt tcctgccaca tttcgacacc agacatccca acaagccggc caaaatccga      2940
     attgtgtttg atgctgccag ccgctcaaat ggagtaagtc tgaatgacta cttgctcact      3000
     ggacctgact tgttggtgtc gctgcctgga atcctggtca agttccggca gaagaagata      3060
     gccatcagtg gagacattac agaaatgttt caccaagtgc ggattcgcaa agaagactgt      3120
     ccagctcaga ggttcctgtg gcgagaagga ggagaagaag aggcatccgt gttccagtta      3180
     gaagtcatga tgttcggctc tgtgtgttct ccatactgtg ctcaatatgc aaaaaacgct      3240
     aacgcaattg agtatcagat ggagttccca gaagccgccg aagccattac caaattccat      3300
     tatatggacg actggctcca atctgtggac accgaacaag aagccatcaa acttgttcgt      3360
     gatgtcactg aagtacacag acgtggagga atggaaattg gcaagtggat ttccaattcc      3420
     aagaagttgc tggaagatgt caaggggaac acggagccaa gtcagaccaa agatctggcg      3480
     gagtggtctg aagtgcaaac agaacgagcc ctgggtttgc actggatacc ggaagaagac      3540
     tgcttcacct tccgggtgaa cctcaaaaga gctggagaag gaattgccac tggagagaag      3600
     ataccgacaa aacgagaagt tttgaggctc atcatgctgg tctgggatcc gttggggttt      3660
     atcgggcact acctggtcaa agcaaaaatc ttgatgcagg aggtctggaa gtccaaaatt      3720
     ggatgggacg acgagatacc ttcatccatg ctgaagaagt ggacaaaatg gatccggcag      3780
     ctaccccaac tggcaggcat aaggattccc agatgctact ctcctatctg tggaacagca      3840
     aaaaatgtgt cgctgcatat tttctcagac agcagtgaag ccgccggatg ctgcctgagc      3900
     tatttacggg tatctgatga aaatgacgaa gtcactgtgt cattcatcat gtccagatcc      3960
     agggtcgctc cagtgaaacc atgctccatt ccaagactgg agctgaacgc agcactactc      4020
     gcctccagga tgggaaaatt catcctctcg gagctggaga tcaaagtaca caaagtgtac      4080
     tactggacag attccatgac ggtgctgcgc tggatcmgga gtgaagcaag aaggttcaac      4140
     acgtttgtcg ctggaagggt tggtgaactc caggaaaatt ccgaagtcas tcaatggaat      4200
     tgggttccaa ccgcagaaaa tccagctgac gatggcacga gggaaggcaa gastgacctg      4260
     agcccagakt cacggtggtg gaatggacct gaatttttgg tgaaagaagc tgattgctgg      4320
     cctgtggaga cttctcaagt caaatttgaa gtcgacgagg accttgagct gcgtaagcaa      4380
     tttgtcgcag tcgttgttga ggtgccgaag tttagcttgc ctgacctggg aagattctca      4440
     aaatttccca ggattgtacg tgccacagct tggatactga aatttatcca gctgaagtta      4500
     aagaagagcg caggmcctct cgacacagac aaagcgaagc ttttgctgtt ccggaggagt      4560
     cagtgggaat catggccaga tgagatgcag ctcctgtccg atggaagggg agttccgaag      4620
     tccagcccgt tatttactct ttctccagta ctggatgaga aaggtgtgct gaggatgaag      4680
     tccaggttga ccggggctga tgagaattta aagtttccaa taattctcca tccgaaaaat      4740
     ggactgacgt tgctgctaat cagacaccac catgaaaaat ttggccatgc tggagaggat      4800
     ctcattcgaa atgagctgag gcagacgtgc tggataccta acctgagagc tgctgtaagg      4860
     aaggtcaacc gggcatgcat aatatgcaga aagaaaagga tccagccaca acctccagag      4920
     atgggtgcac tgccagactt ccgtgtccag ccacaaccca gagcattttg gatttgtggc      4980
     atggattatt tcgggcccat ggaagtaacg attgggagac ggcatgagaa gcggtacggg      5040
     gttctattta cctgcatgaa cacccgggca gtgcatctgg agattgctca ctctcttaca      5100
     acggacagtt gtataatggc cataagaagg atgataagca gacggggcca gccatgtcaa      5160
     atgttcagtg acaacggcac caacctgagg ggggcagaaa aggaacttcg caaagcattg      5220
     acggagctgg accaagatac gctgaagtca gaatgttcca gcaaaggaat aatgtggaac      5280
     ttcattcccc ctgctgcagc tcatatgggg ggaagttggg aaagactggt gcgctccgta      5340
     aaaactgcgc tatcagtcat cctcaggtcc agagctccaa aggaagaagt cctggagacc      5400
     gtctttgcag aagcggaggc gatcgtcaat agtcgtcctc tcactgatgt tcctgtggac      5460
     gtggagtcac cagaagctct gactccattc catttcctca ttggaacgtc cagtaccagc      5520
     cggccacctg gaaaatttga agagaaggag atctgcttgc gaaagcaatg gaggatagcc      5580
     caagcgttaa gcgaccaatt ctggaaacgc tgggttcgag agtacctgcc aaccctccag      5640
     agaagagcaa agtggcacgg aagcagaccg tcattggcag tgggcgacat tgttgtggta      5700
     ctggacgaaa gcctgaagcg gaacacgtgg ccattggggg tcatcattca tgtttttcca      5760
     gggaatgatg gcgtggtccg agtagcagag gtcaagacgg cgacaggtat ttaccgaaga      5820
     ccagtgacga agctcgggaa gctggacgtt cggaaggcag aaccgcaaga ttaagttgtg      5880
     gtcacaacgg ggggaagtta                                                  5900
//
ID   BEL-14_SiCu-LTR repbase;    DNA;    INV; 664 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-664
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5011-5011 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 664 BP; 190 A; 106 C; 114 G; 253 T; 1 other;
     tgttctgccc atttgcgtat aatatttcga taagaatatt tcgaacttat gtattataat        60
     attttgttaa aatatggagt ttttctttgt tgctttcttt tctccataat atgataatta       120
     attttctttt ccaagaaagc aatgattgtt taaaatatcc tatttgtaca tattatgtaa       180
     acctacttcc ggggaaatag gaagtaacta attagttaaa tgttgcttat ctcttcatga       240
     aagtttatga agaaatttct tttgtctcta gaatatccaa ttctattttt agaacgattg       300
     ttaaattttt cgacattcgm cccggaagtc agagaggtat aaatagcgag ctcactctgt       360
     aagattcatt ctcatttcag ttttacggtc tgaactggaa acagctcaga ctaagaagtg       420
     gcttgtgccg tcaactgcaa gtcacttgtt tgattaataa agtcatagtc gctagttcct       480
     attaacttag gtatttttgg gctttatttt tcataaattg catcccggac gttattcccg       540
     ttaagaaatt gacattggga ttccggaagt tatctcagat gagaatctgg tccttcatac       600
     ttttatgttc tcagagttta acgacgctaa cggtttttct ctgagctatc gaaaggtgag       660
     aaca                                                                    664
//
ID   BEL-14_SpEx-I repbase;    DNA;    INV; 5672 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5672
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6894-6894 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5670
FT                 /product="BEL-14_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MPTTRGGSVRSKTTGESSTSSDWSMNTPSDSTSTSAT
FT                 STLSRSTLTKRTPPPSVRSHRSPVLQPDTVGEESTQGKDAQSDPLTSATSK
FT                 QSEATETARQEEDSSTPQGENQNIAVVARRNIRSTPTSREESLQQPHRSAK
FT                 PTRDVDAQSDRSLRKKRAEAQAKMTLALRNLEVAEARSRLAQAELDLIAAD
FT                 SEEEDGAGQEIYEQTREVEKWIIHTAAGTAPDKERIPAETEEKKSDIQELA
FT                 QVILKLADKSRDLTTPKHLELPHFNGACEEWLAFKRSYEDMADSFNNTQNL
FT                 ARLRRAIQGKAREAVHSLLFTAEDPREVIKGLEARFGRPGALALAELEKLK
FT                 NLPKVNENPSEICVFASKVKNAVATIKALKKPQYLSSPETMKVITDKMPPS
FT                 MKFRWFSYHRSRRNEDLQELALIEEFLEIEADMCGDFAPLDATVEQKKTIR
FT                 KSVHAVQQESEEKQKTCPNCQEEHHLSDCKAFKEANINEKWEIVKRAKICF
FT                 KCLRFRHSRINCRAPVCKKCKRWHHTILHSDKPPVPVEKKVNLEENPSEKV
FT                 ASIHKSKGEEKAYLKIVPVDLYGPKGQARVLALLDEGSTVTLLDASIAEQI
FT                 GAEGRQENLTIETVGGKIVTKSGSQKIELKIKGAHRRDKKTIAARTIDDLR
FT                 LSEQSISEATLRNCQHLKGIKEQLLYTSEKPKLLIGQDNWGLIVTRKLKKG
FT                 KPSDPVASLTNLGWVLHGCDTGANAIVNFVNHCEESTAENIEDIVRLHFQL
FT                 ESIGIQDRLPKNDSDRKALEILDKNTRRLASGQFEAGLLWKTEDETLPNNY
FT                 SQAYRRLIGIEKKLDKDKEIRESYEKQIQKLLDQGYAEKAPPTANEGRTFY
FT                 LPHFAVVHPVKRKPRIVFDAAAKFEGKSLNDALLSGPDLLQSLLGVLLRFR
FT                 EGPIAIMADIQDMFLRVKVKDDDRDSLRFLWRGRKRTGKPEEYRMSSIIFG
FT                 AASSPATAIYVMNKNAEDFITAYPEAVKAIKRNHYMDDYLQSFSSAAEAKK
FT                 ISKEVKEIHAKASFHLKGWASNDSSVLNEVEDMNKEDCVELTKEEKTLGLR
FT                 WLVKEDALAFNVGLRKTPKDLLEGKRIPTKREVTSAVMSTFDPMGFATPVL
FT                 IQGKKLIQNIWRTKIDWDDEINENQNEAWRQYLAEVSALTRMKIPRCFSPN
FT                 TRKGQLHTFTDASEEAYAAVVYWRTVEPDGRIHISMISGKARVAPTKPVSI
FT                 PRLELQAALLGSRLAATLEEEMDLEVTKKTYWTDSSTVLQWIKSEPRKFKT
FT                 FVANRLAEIEEKSRPDDWRWVPTKENPADDATRGTPLEFDYNSRWFQGPKF
FT                 LREPEEEWPFRNFKQGGTMPEEKNKQKVMATKVEEENLIDLERFSGWKRLL
FT                 RTTARVVAFACLLLKKTHRATNVAVRRKEDSWRPQKKTQKPTQVAVTPRQE
FT                 KKRLYVPLEKEHLKKAELLLIRQSQNDSFASEIRNLKAGKPRLDNSSRLKR
FT                 IDVYIDDDGIIKLRSRTMKFRGEERRKMNPIILDGNQKIARLIIQHYHQKF
FT                 LHANTATVMNEIRQKYWILGLRATLKAISYNCQWCKMRKKLPEIPPMGDLP
FT                 EERLQHHQFPFSCAAVDYFGPMQVTIGRRTEKRWGALFTCLTTRAIHLELV
FT                 PSLSTSSMIMALRRMAARRGTPKVIFSDNGTNFVGANKELEEAAEQRGIKW
FT                 KFIPPGTPNMGGAWERLVRTVKTALAAVLNERTPPEEVLHTLMTEVEHIVN
FT                 SRPLTPVSMDPDDEESLTPNHFLLGRSCGAMTPGEFSETDLIGKANWRTSQ
FT                 RLADHFWKRWIREYLPLLMQRKIDGRATSDPKEGDVVMIVDATLPRNSWPR
FT                 GEVIKTYPGPDGRTRVLDVRTSGGVLRRPTRKIIVLVPGASSRPQEDVLRT
FT                 AGE"
XX
SQ   Sequence 5672 BP; 1941 A; 1273 C; 1390 G; 1068 T; 0 other;
     aatggtcctt cgagccggat cgggattaat agtttgaaga agatgcctac tacaagagga        60
     ggttctgtgc gttcgaaaac tacaggagaa agttctacgt catcagattg gagtatgaat       120
     acgccgagtg attctacaag tacgtcggcc acgtccacct tgagtcggtc aacactgaca       180
     aaacggacgc cgccgcccag tgtacgatca caccgatcgc ccgtactcca accagatact       240
     gttggagaag aatcaacaca ggggaaagat gctcagtctg atcccctgac tagcgccacc       300
     agcaagcaaa gcgaagccac agaaactgcg agacaagaag aagactcttc cacgccgcag       360
     ggcgaaaacc aaaacatcgc cgtagtggcc cgacggaata taaggagcac gcccacgtca       420
     agggaagaaa gccttcagca acctcatcgt tcagcgaagc caacccgtga cgtagacgcg       480
     caatccgacc gctccttgcg aaagaagagg gctgaagccc aggccaaaat gacgctagca       540
     ctaagaaatc tagaagtagc cgaagcgcga tccaggctag ctcaagcaga gctagacctc       600
     atcgccgcag attccgagga agaggatggc gctggccaag aaatatacga gcaaactcga       660
     gaagttgaaa aatggatcat ccatacagca gccggtacag cacccgataa ggaacgaata       720
     ccggctgaaa ctgaagaaaa gaagagtgac atccaggagt tggctcaagt aatactcaag       780
     ctcgccgaca agtcacgtga tcttacaacg cctaagcacc ttgagctccc gcactttaat       840
     ggggcctgtg aagaatggtt agcattcaaa agatcatatg aagacatggc tgactccttc       900
     aacaacaccc agaatctggc gcgccttaga agagcaatcc agggaaaagc cagggaggcg       960
     gttcacagcc ttctgttcac tgctgaagac ccgcgtgaag tcatcaaagg cctagaagct      1020
     agattcggac gtcctggagc cctggcattg gctgaattag agaaactaaa aaatttaccg      1080
     aaggtcaatg aaaacccaag tgaaatttgt gtattcgcaa gcaaagtcaa gaatgctgtt      1140
     gctacgatca aagccttaaa gaaacctcag tatctcagtt cacctgaaac catgaaggta      1200
     ataacagaca agatgccacc gtccatgaaa ttcagatggt tctcatacca cagaagccga      1260
     agaaatgaag acctgcaaga gttagcactt atagaagagt tcctagaaat agaagcagac      1320
     atgtgcggag acttcgctcc actcgacgca acagtggaac aaaagaagac gataagaaaa      1380
     tccgtacatg ctgttcaaca agaatcagaa gaaaaacaga agacatgccc aaactgtcaa      1440
     gaagaacacc acttgtcaga ttgcaaagca ttcaaagagg ccaacataaa cgaaaaatgg      1500
     gaaatagtga aaagagccaa gatctgtttc aagtgtcttc gcttcaggca ctcaagaatc      1560
     aactgtagag ctccagtatg caagaagtgt aaaagatggc atcacactat attacattcc      1620
     gacaaaccac cggtaccagt tgagaagaaa gtaaacctag aagaaaatcc ttcagagaaa      1680
     gtcgcctcga tccacaagtc caaaggggaa gaaaaggcat acctgaagat tgtcccagta      1740
     gacctttacg gacctaaggg ccaagctcgc gtgctggcat tgctggacga aggatcaact      1800
     gtcaccctct tggacgcttc aatagccgaa cagatcggag cggaaggacg tcaggagaac      1860
     cttacgattg aaacagtggg tggaaaaatt gtgacgaaga gtggttcaca aaagattgaa      1920
     ctgaagataa agggggctca tagaagggac aagaagacca tagcagccag gaccatcgat      1980
     gacctaaggc tgtcagagca aagcataagc gaagctacct tgagaaactg tcagcacttg      2040
     aaaggtataa aagaacagct tctttatacc agtgaaaagc ctaagctgtt gattggccaa      2100
     gataactggg gactcatagt aacaagaaag ttgaagaaag gcaaaccaag tgaccccgtg      2160
     gcctccctta ctaacttagg atgggtacta cacgggtgcg acaccggagc caacgccata      2220
     gtgaacttcg tcaatcactg tgaagaatct acggctgaaa acatagagga tatcgtccga      2280
     cttcacttcc agctggaatc cattggcatt caagaccgac taccaaagaa tgacagcgac      2340
     agaaaggcat tagagatcct tgacaaaaat acaagaagac tagcaagtgg tcaattcgaa      2400
     gcgggccttc tgtggaagac agaagatgag actctaccca acaattactc acaagcatac      2460
     agacgcttga ttggcattga aaagaagtta gacaaagaca aagaaatcag agagtcatac      2520
     gagaagcaaa tccaaaaatt acttgaccaa ggatacgcag agaaggctcc gccaactgca      2580
     aacgaaggaa ggacattcta cttaccccac tttgctgtag tgcatccagt caaaaggaag      2640
     ccaagaatcg ttttcgatgc agcagcaaag tttgaaggga aaagcctcaa cgacgcacta      2700
     ctttcgggtc cagacttgct gcagtcatta cttggggtac ttctacgttt cagagaaggt      2760
     ccaatagcta tcatggccga cattcaggac atgttcctcc gcgtaaaagt aaaggacgac      2820
     gatcgagaca gcctaaggtt tctgtggcgt ggaagaaaaa gaacagggaa gcctgaagag      2880
     tacagaatgt cgtcaattat ctttggagca gcatcgtcac cagccaccgc tatatacgtg      2940
     atgaacaaga atgcagaaga ctttataacc gcgtatcctg aagcagtaaa ggccattaaa      3000
     aggaaccatt atatggatga ctatcttcag agcttctcat cggccgccga agcgaagaag      3060
     atatcaaaag aagtgaaaga aattcatgct aaggcgagtt ttcacctcaa aggttgggcc      3120
     agcaatgatt caagcgtctt aaacgaggta gaagatatga ataaagaaga ctgcgtagaa      3180
     ctgactaagg aagaaaagac cttggggcta cgatggctag tgaaagaaga cgcattagct      3240
     tttaatgttg ggctgcgaaa aacaccaaaa gacctacttg aaggaaaaag aattccgaca      3300
     aagagagagg tgacgagcgc cgtaatgtca acattcgatc caatgggatt cgctactcca      3360
     gttttgatac aaggaaagaa actaattcaa aacatctggc gtactaaaat cgattgggac      3420
     gatgagatca acgaaaacca aaacgaagct tggcggcaat acttggcaga ggtgtcggcg      3480
     ttaacaagaa tgaaaattcc tagatgcttt tcacccaaca ccagaaaggg acaattgcat      3540
     acattcactg atgcaagcga agaggcctac gcagcggtag tgtactggag aacggttgaa      3600
     cctgacggaa gaatccatat ttccatgatc tccgggaaag cacgagtagc acccacaaag      3660
     ccagtatcga tcccaagatt ggaattacaa gcggccttac tcggcagcag attagcagcc      3720
     acattagaag aagagatgga cctcgaggtg acaaagaaaa cctactggac agattccagc      3780
     acggtgctac agtggatcaa gtcagaaccg cggaaattca aaaccttcgt tgctaaccga      3840
     ctagctgaga tcgaggaaaa gtccagacca gatgactgga gatgggtacc aaccaaagag      3900
     aacccagcag acgatgccac aaggggaacc ccgcttgaat tcgactacaa ctcgagatgg      3960
     tttcaagggc caaagtttct tcgtgaacca gaagaagaat ggccattccg gaatttcaag      4020
     caaggaggaa ccatgccaga agaaaagaac aagcagaagg tgatggcaac aaaggttgaa      4080
     gaagaaaact taattgatct tgagaggttt tccggatgga aacggctgtt gcgtaccacg      4140
     gctagagtgg ttgctttcgc atgtctccta ttgaagaaga cacatagagc gaccaacgtc      4200
     gccgtccgcc ggaaagaaga ctcctggaga cctcaaaaga aaactcagaa accgacgcaa      4260
     gttgccgtta ccccacggca agaaaagaag cggttgtacg tacccttgga aaaagaacat      4320
     ctgaagaagg ccgaattgtt gttaatcaga caaagtcaga acgacagctt tgcgtcagaa      4380
     ataagaaatc tgaaagcagg aaaaccaaga ttggacaatt ccagtcggct taagaggatc      4440
     gacgtctaca tagacgacga cggaataatt aaactaagaa gtagaaccat gaagtttcgc      4500
     ggtgaagaaa gaagaaagat gaatcctatt attttggatg gtaatcagaa aattgcccgc      4560
     ctcatcattc aacattatca ccagaagttt cttcatgcaa atacggccac agtcatgaac      4620
     gaaatccgac agaagtattg gatcttgggt ctacgagcaa cgttgaaagc aatctcatac      4680
     aattgtcaat ggtgcaagat gaggaagaaa ctgccagaaa taccgccaat gggagaccta      4740
     ccggaggaac gattacaaca ccatcaattc ccattctcgt gcgcagcagt agattacttc      4800
     gggccaatgc aagtaaccat cggaagaaga actgaaaagc gctggggagc actattcact      4860
     tgcctcacca ccagagctat acatctagag ctagtgcctt ctctcagtac cagctcaatg      4920
     atcatggcac ttcgacgaat ggcggctaga agggggacac cgaaggttat cttcagcgac      4980
     aacgggacta attttgtagg agcaaataag gagctagaag aagccgcaga acaaagggga      5040
     atcaagtgga agttcattcc tccgggaacc ccaaacatgg gaggagcatg ggaaagacta      5100
     gtaagaacag tcaaaactgc actagcggca gtcttgaatg aaagaacacc accagaagag      5160
     gtgcttcaca cgttaatgac tgaggtcgaa cacatagtaa actcaagacc tctcacccca      5220
     gtcagtatgg atccagacga tgaagaaagt ttgacaccga atcacttcct gttgggaaga      5280
     tcatgtggag caatgacacc tggagaattc agcgagacag acttgatagg gaaagccaat      5340
     tggagaactt cccagaggct ggcagatcat ttttggaaga gatggatcag agaatattta      5400
     ccccttctga tgcagaggaa aatcgacggc cgagccacca gcgatcctaa agaaggcgac      5460
     gtcgtcatga tagtcgacgc aacactgcca cgaaattcat ggccccgtgg agaagtcatc      5520
     aaaacgtatc caggaccaga tggaagaacg agagtgctag acgtgcgcac atcgggagga      5580
     gtactccgac ggccgacgag aaaaatcatc gttttggttc ctggggcgtc atcgcgtcca      5640
     caagaagacg tgctacgcac cgcgggggag aa                                    5672
//
ID   BEL-14_SpEx-LTR repbase;    DNA;    INV; 745 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-745
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6922-6922 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 745 BP; 284 A; 117 C; 133 G; 211 T; 0 other;
     tgttagcgat gaccccaaat tagagtaaga tgcccttaaa taattaattt aagcgttgaa        60
     aatgaatgtt aaattatcaa atgattagta ataattaacg taagtaattc acgtaagata       120
     ttatgaatat aattaataat agaaaaatat taatgtgata ttgtataaat taaaagaaaa       180
     gaatttgtaa ttacatgtaa cataaccgca gccagagggc gccacttgta cgatggtcgc       240
     aaaagcttaa gtaccacgaa gctttaccgt agcgagaaca tgtaatagtt ttttacgatt       300
     ttaaagcaga aaaatgttta ttttatgtta gttttaagtg taaaatgtta gaataagtta       360
     ttattaatgt taaaataata tttatcacct tgtaaaggat gcccaaatac ggaaaactga       420
     aaaataagat ttccccatac aaactagaca gtttctaagt gtaaaaaacc taaaacgctc       480
     tgattggctg ccgccaaaag gatagtgccg tgtgcaaact ccgagcgttc tgattggctg       540
     aaggtctcta taaaagaagg cagttttcct tggttgggca ttctgaatcc agcagtacta       600
     cgaaaaggaa tataaaagaa gaacttaagg aaaataaaag aagaacttta caatcaagga       660
     agtgtttatt ctgaacgccg acacctcttg ccaagctact cccgccagcg caaaataaat       720
     tcgttctaca gcctcagctg caaca                                             745
//
ID   BEL-14_TrNi-I repbase;    DNA;    INV; 3677 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-3677
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1021-1021 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..2897
FT                 /product="BEL-14_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase (partial)."
FT                 /translation="MSLQSHVKVQDDIYVRLSRAKINFKKSPKDRITLQYL
FT                 ETRLESIEELWAQFTLTHTQIVKDFDHKELSSSPYTVNEVYFNTEDLYLDL
FT                 RCELKIALSKIKNSNVSSAMGSSNNNSPNKSMTIKLPRITIPTFSGKYTEW
FT                 PTFRDLFMSAIHKNSTIDNVQKLHYLKSYLTGEAEQLLRHIPISESNYERC
FT                 WAQLETRYNNRKYLSHCILVRLLSQKNIVQESASALKELMDTTSDCLNALV
FT                 NLGIDVTSWDIIIIHIITLKLDPESRKDWELKVTSNIDSDELPTFGQLKDF
FT                 LTGRYRALEFLGNKSSKNIVTKERVFHTAANTANACPVCNSTEHKIRNCKQ
FT                 FVNKDVDSRRTFVQDHNLCFNCLGYNHSARWCKCTASCQICKRRHHSLLHL
FT                 KGEWESAGDKGDSSTQAHSATVEEESQNDVVACFSKGGVRSQVLLATALVR
FT                 AVCKNGGMSTIRALLDQGSQASFVTERTVQSLGLHKKAVKGSITGIGGHNK
FT                 LSLNSVVEVKIQSRINSSFELVVKAYVLKSITSLLPGGEISYLDWTQVSDM
FT                 ELADPRYNKPDKVDMLLGAEIYSQVLQNGFKRAPDGSTIAQATSLGWILSG
FT                 TVASASQQTSNITVMHAQLGNDEILKKFWEIDKEPNRIRKQRLTEEEARCE
FT                 ETFMATSTNKEKCAEVMKESLQLGHMRERTKSEEQNEHAVYLPHHAVVRND
FT                 KDTTKVRVVFDASCKGKNGVALNDDLMIGPRLQPDLRNLLIGWRIAPVFGS
FT                 AIDAASGVR"
XX
SQ   Sequence 3677 BP; 1218 A; 606 C; 825 G; 1028 T; 0 other;
     tggtccttcg agccggatag aagcgttgta aatatcacgc ttctcggatt tttgggtatc        60
     agcggcacag aaaccagtgg tgggtcgcca ctgaagtgct accagtgacg ccaacagaag       120
     gcgccaccgc agttcaagca agttctgcgg gcaccggagc tgaagattgg tggaagtggc       180
     atcccagcag ctgcgcacca aaccgagagc ggagcgctcc ctggcgggcg ttgggtacaa       240
     ctactacaca tcggcagcaa gcaagctgca agcgacgtcg taaggaagtg agtgatagtg       300
     caagaataac gtaagtactt tgagactatt tcgtgtgaag caaaagtgaa ctttattgcc       360
     tagaagatta taacttagaa aaattcttgg acttagaata attgtaatgt gtgcatgtta       420
     gacttagtta gatttaagcc aaattccgtt cagacgggga acctatgccc gattttctat       480
     agattcataa ggttcaaaca cttagaaaat ttttgatatt tatatggact tgtaaaattt       540
     cttaaaaaaa atagttggta tttacattgt attgtaacct tttttggaaa gcgttggcaa       600
     ttataaaaaa aatcaaaatg tctttgcaat cacatgtcaa agtgcaagat gacatttacg       660
     tccgattgtc aagagctaaa attaatttta agaaatcgcc aaaggatagg attactttac       720
     aatatttaga aaccagatta gagagtattg aggaattatg ggcacaattc actttaacac       780
     atacacaaat tgtcaaggat tttgatcata aggagttatc atcttcacct tacactgtca       840
     acgaagtcta ttttaacacg gaagatttgt atttagattt aagatgcgag ttaaagatcg       900
     cattaagtaa aataaaaaat agcaatgttt cttcagctat ggggtcttca aataataatt       960
     ctccgaacaa aagtatgact attaagttac ctagaataac aattccaact ttttccggaa      1020
     aatatactga atggcccaca ttccgcgatt tgtttatgtc agcaatccac aaaaatagca      1080
     ctattgataa tgtacaaaaa ttgcattact taaagagtta tttgactggg gaagccgagc      1140
     aactccttcg tcatatacca atttcggaat ctaattatga aagatgctgg gctcagttgg      1200
     agactagata taacaataga aaatatttat cacattgtat tttagtaaga ttgcttagtc      1260
     aaaaaaatat tgtacaagag tcagctagtg ctttaaaaga attaatggat acaacatcag      1320
     attgtttaaa tgcgttagtg aatttgggta ttgatgttac ttcctgggat attatcataa      1380
     tacacataat aacattaaaa ctagatcctg agagcagaaa ggattgggaa ctaaaagtga      1440
     caagcaatat agattcagac gagctgccta catttggaca gctcaaagat tttttaactg      1500
     gccgttatag ggctcttgag tttttaggta ataagtcaag taaaaatatt gttactaagg      1560
     aaagggtatt tcacacagcg gccaatacag ccaatgcatg tccggtttgc aacagcactg      1620
     agcataaaat aagaaattgt aagcaatttg ttaataagga tgtggatagt cggcgtacgt      1680
     ttgttcagga tcacaattta tgttttaatt gtttgggata caaccactct gctagatggt      1740
     gtaaatgtac agcctcgtgt caaatctgta agcgaagaca tcactctttg ttgcacctta      1800
     aaggtgagtg ggagtctgct ggcgataagg gagattcatc aacgcaagca cattctgcca      1860
     cagtcgaaga ggaatctcaa aatgatgtcg tagcttgttt ctcaaaaggt ggcgtgcgta      1920
     gtcaagttct gctagccact gcgttagtga gagctgtttg caaaaacgga ggtatgtcta      1980
     ctatcagagc gctgttggat caaggctcac aagcgtcttt cgttacggag cgtactgtgc      2040
     agagtttagg attacataag aaagcagtta aggggtcgat tactggcata ggtggtcata      2100
     acaaattaag tttaaattcg gttgttgagg tcaaaattca atctaggatt aattcatcat      2160
     ttgaacttgt agtcaaagca tatgttctca aatctataac gtctttacta ccgggtgggg      2220
     aaatatcata tttagattgg actcaagtta gtgatatgga actagcggat cctagatata      2280
     acaaaccaga taaagtcgat atgttgttag gggcagaaat ttacagtcag gttttgcaga      2340
     atgggtttaa aagagcacct gatggtagca caatagctca ggctacttca ttgggatgga      2400
     ttttatcggg tacagtagcc tctgcttctc agcaaacatc aaatattacc gtgatgcacg      2460
     cgcaactcgg gaatgacgaa atcctgaaaa agttctggga aatagacaag gaaccaaatc      2520
     gcatcaggaa acagagactc accgaagaag aggctagatg tgaagaaaca tttatggcta      2580
     catctactaa caaggaaaaa tgcgcagaag ttatgaagga gagtttgcaa ctgggacaca      2640
     tgagggaacg aactaaatca gaagagcaaa atgagcatgc tgtgtactta cctcaccacg      2700
     cggttgtacg taatgacaaa gacacaacca aggttcgggt cgtttttgat gcttcctgca      2760
     agggaaagaa tggagtagct ctcaacgacg acctaatgat tggacctagg ctgcaaccag      2820
     atttgcgaaa tctgttgatt ggttggagaa tcgcacccgt ttttggcagt gcgatcgatg      2880
     cagcaagtgg cgtacgatga tggagtcaaa tatccactcg cagctgaaag agttcttaaa      2940
     gatgattatg tgaatgatct aatgactggt tgtgacacta caaaagaagg catgcaaatc      3000
     tataatcaat tgaacgagtt aatagcaaag gcaggattca ctgtacaaaa agggttaagc      3060
     agcagcagtg aagtactgga gaaaatgatc gggaaaaaat actcgttcaa ggggcaagat      3120
     gaagcggaaa aggtaatcaa cataaaacaa gatgaaatat ttaaaaattt ggtacttacc      3180
     tggaaccgaa cctgtgacac cttccaatat tctgttcagc tacctgcgct gcaagaaact      3240
     gtaaagaaga aaaaattgtg ggtttctgga attggatggg atgaggaagt ttcatatgaa      3300
     aaaaataata agaatggttt acttaccgac atcagctaaa ttttattacg agtttacagt      3360
     tcctcgatga agacggttac acttgaagca cagtgaaaag cagatttagc atccggggtt      3420
     agacaatctt acacgagtag ttacaattcg cagtaagggt tctatgctca aaaggccaac      3480
     atccaagctg tgtgtcctgc ctattacctg aggttatttt aaattaggat aggttaagca      3540
     tagttgttag aattgtatca ttggtttgta gaatttatta ttgtaaggtt gttttgtgtt      3600
     tagtattgta aggaattttt ggtttgaata actttggaag gacataatgt ttcacaaaat      3660
     gtccttggtg ggcggaa                                                     3677
//
ID   BEL-14_TrNi-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-14_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-263
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1049-1049 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 263 BP; 75 A; 48 C; 48 G; 92 T; 0 other;
     tgtttaaccg caaatgtgtc aaaatatcaa aagtaaggtt cagtttgttc caccattttc        60
     cacaagatgt cactgtgctt tgagaccgct tttctgaatg gcggtgttaa aattttccgt       120
     gtatattata agagagtcga ggatttttat tttttttggt atcattttat gtaatattcg       180
     gattaaagta ttttggtaac cacgaccagg tgctttaatc aaatcaaccc ccagcttaac       240
     cctccgatac cgagggttaa aca                                               263
//
ID   BEL-150_AA-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   supercont1.243;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-150_AA_;
KW   BEL-150_AA-I; BEL-150_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-595
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.243; Positions 1094676 1095270.
XX
SQ   Sequence 595 BP; 218 A; 97 C; 119 G; 161 T; 0 other;
     tgaagatagt gaactatttt gaatttaatt ctaactctta aaacttaata ctattatcaa        60
     tgagctaaaa cttacagcta ggaataaata ggttaaaact taaactgtta tacactccgc       120
     gaaacacaac acatgaaata tctatataag tacacatgca gctactgata acactgataa       180
     aattattaca caacacaaca cagagataga gcacaaatga tcatatgtgt aggtaataag       240
     ccgaacctac aggtagcttg tatggctagg aaagcatttg tacgagttag tagccaacag       300
     attgtcgggc aataaagtac ggtttcaacc tgtaacgcaa atcaaataaa ttagtctagt       360
     tcaaataaat tcgtagttcc atcctaagtt cggagtttca gtgcatgtaa ggagaaaaaa       420
     ggaagtgcct gcaaatatct atcaattgag ttttgaagaa ttcgttcggt atttggtgcg       480
     gttgacagat ttctcctacg ctaaataaat tgaagggcgt tagagcaacg atagaagttt       540
     tggtgaagtt gggaaaggct gaatccaacc agcgaaccga ggagtgctgt gaaca            595
//
ID   BEL-151_AA-I repbase;    DNA;    INV; 6237 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.01, Created)
DT   05-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-151_;
KW   BEL-151_AA-I; BEL-151_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6237
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6237
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 83-83 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6237 BP; 1691 A; 1502 C; 1651 G; 1393 T; 0 other;
     aaaagcttta agaactgctt tgatcagcaa gaagaggcga agtatgcctg aaacggatct        60
     gtacgactgc aaactatgcc ggaggtcgaa taacgttgat gatatggtct tctgtgcggt       120
     atgtcaagaa tggtatcatt accagtgcgt gggagttaca tcagcggtag caaacgaaag       180
     ctggatgtgt gcacgatgcg cggctctacc gtcgtccaca cgaattggtg agctttttgg       240
     aaatgatccg gtactcccgg ccaccatcgc taccgtatcg ttagtagggg ccaccgaatc       300
     atcggcgatc gtaggttcaa cctcttccga ggtatcacct gcggcgagtg ctgcactacc       360
     gctagtggca actgcagtat ctccagctgt gacgtcgatt gcagctagtc tgatgccacc       420
     cgcagttgct ggaccatccg gttggataac tacaacgacc ccggctgtaa gtgcaactaa       480
     ctatggccaa tccctattga cggagcaggc acgagcgagt ttacaatggg tgcaggaaca       540
     tcgagcattc ctcgagcggc aaatggaaga gagccacaag aaggaattag agaggaagaa       600
     ggccatgttg gggcaactcg cgaataatgc catgcaaggc gttattactg gagtgacatc       660
     gaatagcatc aatgagcagt ccgctgcagt tggaaccagt agcgtaggag gctggctggg       720
     aaggatgatc ggcgagatgg aaaatctgtc gctcacacca gcgtgcacgg agacaagggt       780
     gacagcacca gtaatatccg tacacaacaa caactccaca ccgacaactg cgggttctgc       840
     tagccgaagc gtgttcgatc catctttctc atcacttctc cttggagtgc ctagtagtat       900
     gtcgagagct cccacagact cattttctgc atgccagtac actactatgc catctacccc       960
     tctatatgga tactcacaac cgagccgaga ccagttccaa caaatcagcg tgtttccaat      1020
     tagcaccccg gtttcctcta ttagtctgag gaatgctaat ttgacgaacg tagtcaccgc      1080
     ctgcccaaca gttcccaccg catcgattcc accgcaggtg ccggtttatg gagggttacc      1140
     agcaaattca agcataccca gaacggatcc gattcccgtt cccccacaag gttctttggg      1200
     tagccatcct ttggttaacg cagctcaagc tcttccgttg ccacaagcgt caccttttcc      1260
     aacgtttcct acgcagcagc aattgttagc gcgacaagtc atgccgagag atcttccact      1320
     gtttcggggc gacccggaag attggccgct attttttagt gcatatacta attcaacagc      1380
     cgcatgtgga tacaccaacg tggagaattt ggcacggctt caacgtgcgc tacagggtaa      1440
     ggcattcgat gcagtaaaaa gccgtttgct tcttccagcg tgcgtcccac aagtcatttc      1500
     cacgttgtac atgctgtacg ggaggccaga gttgatcatc cagacattgc tggacaaagt      1560
     tcgggaaact cccgcaccaa gggcagacag gctggaaacg ttgatcacct ttggtatggc      1620
     ggtgcaaaat ctgtgcgacc acatcgaggc aacggggcaa gtagcgcacc tgtgcaaccc      1680
     tgttttactg cgagagttag tcgacaaaat tcctgcgcaa caacgtctaa actgggcgtt      1740
     atacaaacaa cagttcgctg gggttgatct tcgcacattt gctggtttta tgtcgatgtt      1800
     ggtatcagcc gcctcggacg tcacagtcac aacggattct aagcaatcac gcttgggacg      1860
     aggagagcgt ggcagagata aaaactttct caatgctcat gctgccagcg aaccagcctc      1920
     aaatctagtg agtcaagacg gggagataaa gaaagtagaa gtcaaggagg tactgtgcct      1980
     ggcatgcaat gggcgtaatc acaaagtgaa agattgtgca acgttcaaaa agtgggagcc      2040
     ggacagtcgc tggaagacga ttcaagatca tcatctttgt cgcacatgct tagggaagca      2100
     cgggcgccgt ccttgtaagc tgcaagctgt ttgtggtgtt gatgggtgtc agcaacgtca      2160
     ccatcagtta ctgcactccg gcagtcagaa acgtcctgcc ccaatgagag aagggcaaaa      2220
     aactgtgaag cagaacgata accctgctga agggctaaat gcacaccatg ctaccaagaa      2280
     atcgacatta tttcgcatcc ttcccgtgaa gctgttttgg aaaggtaaaa ctgtagaaac      2340
     ctttgcgttt ttggatgacg gctcggacat gactttggtc gagcaatcga ttgcagaacg      2400
     attaggcatc gatgacggcg aaccactccc actttgctta acgtggacca gcaatgtaac      2460
     tcgccaggaa cccaagtccc aacgaattcg tctagaaatc tccggagcca gcaaaagtga      2520
     acggttcact ttaaacgata caagaacagt ttctagcctc aatcttccga agcaaacgtt      2580
     gaagtacgct gaattagctc ggcaatacaa ttaccttcgt ggtcttccag taaccagcta      2640
     tgaatcagca actccaggca ttttgattgg ctcgaacaat gccagtctta ctgcgacgct      2700
     atgtctgcgc gaaggtcagc taggggaccc cttagccagt aagactcgac tcggttggtc      2760
     gatctacgga tatacagcgg atggagagaa ggtcaacaac ttcacgctgc acgtgtgcga      2820
     gtgtcgacga gaatgccaag caggccaaga tcttcacgat ctcgtcaagc agtatttcac      2880
     gctcgagagc atcggcgttt cggcggacaa ggcaccagaa tcggaggagg acaagcgtgc      2940
     tcgtcagatt ttagaggaca ccacgaagcg catttcaaac aagtttgaga ccgggctgct      3000
     gtggcgccat gaccatgtgg aatttcctaa tagttttccc atggcaatgc gtcgtctgga      3060
     atgtttcgag cggaggatga aaaaggatcc agatctgcgt acaagcgtac agcaactgat      3120
     gggcgaatat gtggaaaaca attatataca cgaggtgacg caagatgaaa aggagtcgat      3180
     agatcctcgg agggtgtggt acttgccgtt gggcgccgta agaaacccga agaagccggg      3240
     caaaactagg ctcgtttggg atgctgcggc aaaagtggga ggagtgtctt tcaactcgat      3300
     gcttctcaaa gggcccgact tactaacacc tttggctttg gtgctatgta gatttcgcga      3360
     acgaccggtg gcagtttgcg gggacctgaa gcaaatgttt caccagttca gaattcgcca      3420
     acaagatgca cacagtcagc ggttcctgta ccgagaacac ccctcgcaac ccgtaaaaat      3480
     gttcgttatg gacgtcggta cctttggggc cacatgctct ccctgtcagg cccaatatat      3540
     taaaaaccgc aacgcgaagg aacacgaaac agaatttccc gaagcagcaa aggcaatcgt      3600
     agaaaaacac tatgtcgatg attaccttga cagtttcgac acagaagcgg aagcaatcaa      3660
     ggttgctctt gaagttaaag aagttcatgc tcgtggaggg tttgagatcc ggaattggca      3720
     ctctaactcg gacgcccttc tgcgacgggt cggggagccc agaggaatcc agtcgaaagt      3780
     catcagtatc gatttagagg gcgatgcgga acgagttttg ggcctcctat ggttgccgga      3840
     ggaagatgta atcgcatttg ccactgacca gcagtttgac ggtattatac cgacgaagcg      3900
     aaatatccta cgttgtgtca tgagcctgtt tgactcacaa ggtatattgt cgcatataac      3960
     aatacaggga cggatgatca ttcaggatac gtggcgaaaa cagacgcaat gggacgacga      4020
     agtcgatgaa tcagttcgta tacgctggct tcgatggacg gagctgttta agaaggtcgg      4080
     acagatgaga ctacacagag cctactttcc aggattcacc gctgcagata ttggttcagt      4140
     agagctgcat attttcacgg atgcaagtga ggaagcttac gcttgcacag cttacttccg      4200
     ggtcattata atggggaagg tatatgttac gctggtgatg gctaaggcga aagttgcacc      4260
     gttgaaatct ttatcagtac ctcgtctgga gttgatgggg gcactactgg gagcaaggct      4320
     ggccaaagcg gtgaaggaat atcatactct tccgatatgc cgtcgagtaa tgtggacaga      4380
     ctctaaaaca acgctggcgt gggttaaatc gcagcattgc cggtaccgac agttcgtggc      4440
     ttttcgagtg ggagaaattc taagcaagac agaagccacc gagtggagat acgtcccaac      4500
     acaacataac ccagctgacg atgcaactaa atggggcaag ggacccagca cggatgtaac      4560
     gtctcgctgg ttccaaggac ccgacttcct ctatcagccg gaaataaagt ggccggaaca      4620
     aagatcgaca cagacgctcg aaacagatga agaattgaga ccctgcatgg tacatcgtca      4680
     gaaaacattc gaggatgtct acaatatctg taaattttct aagtgggaac gtttgcttag      4740
     aacagccgca tacgttcacc gctacatcga gaacagcaag cggaaatgga gaaaagggtt      4800
     gctgatcatg gggcatctac agcaggaaga gttgcaaaat gcagagaata gcctgtggcg      4860
     tacagtgcag ttatcagcgt acccagatga agtcgctgtg ctgaaacaaa gaaacggaaa      4920
     cccgaagaag gctatcgata agactagtcc agtctacaag ctgtcgccgt tcttagacga      4980
     atacggcgtg atgcgggtag acagtcgcat cggagcagtt ccgtacgtta catatgactt      5040
     taagtttccg atcatcctgc cgagacatca ccatctcact aaactagtcg ttgactggta      5100
     tcaccgccga tatcttcacg ctaatcatgc gacggtgcag aatgaggttc accaacgctt      5160
     ccatgtctct aatcttcgct ccgttgtacg acaagttaca aaagaatgtc aggcctgcaa      5220
     gatctccaaa acagtaccaa ccacgccgaa gatggctcct cttcccgagt cacgtctagc      5280
     ggcaaaagaa agaccgttct cccacgtcgg gctggattat ttcggaccca tacaggtccg      5340
     tatcgggcgt agctgtgtca aacgatgggt agcgttgttc acgtgcctca ctgtgagagc      5400
     agtgcacttg gaagtcgccc attcgttatc tacggaatca tgtaagatgg cagtacgtcg      5460
     gtttgtggcg cgtcgtggat cacctgtcga aattcgctcc gataatggga ccaattttca      5520
     gggggctagt cgtgagttgc gtgatcaaat cgcgacgatt ggtcaaggcc tggctgaaac      5580
     gttcaccaac tcgaatacaa gatgggtctt caacccaccc tctgcaccgc actttggtgg      5640
     ctcatgggag cgattagtaa ggtccgtcaa ggtggcactt ggttcactat gtggcgatcg      5700
     aaacccggac gatgaaacgc tgctgacagt ccttgctgag gccgagtcca taattaactc      5760
     tcgaccgtta accagcattc ctcttgaaag cgttagccag gaggcgttaa cgccaaatca      5820
     ttttatcctg ctaagctcaa acggagtcgt ccaacctcct acgaagctag cggaattaac      5880
     aggcgcaacg cggacaaact gggacctggc taggaagctc gttgatcagt tctggcgacg      5940
     atggatcgca gaatatcttc cgacgattgc aagaagaagt aaatggctcg aagaagctga      6000
     gaagctcaaa gtagacgatt tggtgctgat cgtggatgaa ggccgacgta acggatggac      6060
     gagggggcgg atagcagcga taattccagg aagtgatggt cgaattcgcc aagccatggt      6120
     tcagaccaca ggagggttgt tccggcgccc agtgaccaag ttggcagtgc tccaggtgca      6180
     aggccatggt aacgcagaaa caacggaaga accggaattg cgtcacgggt cggggac         6237
//
ID   BEL-151_AA-LTR repbase;    DNA;    INV; 653 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   05-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-151_AA_;
KW   BEL-151_AA-I; BEL-151_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-653
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-653
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: >99% identical to the consensus.
XX
SQ   Sequence 653 BP; 214 A; 125 C; 120 G; 194 T; 0 other;
     tgttgccacc actggcagca ctgatttgaa ttgaatggat acgcgatacc cctcgacgag        60
     actatgcacg caacgggtga tatgaaccga tgcgtaagaa acgtcaggga gaccaacgaa       120
     cgtcaaaacc cacatacatt tcgcaagtca tagtagatgc taagaataat gtgaattctt       180
     tcttcctaat tattgaaaat tactagttat atcaaagtat ttagattgtg ccagttattc       240
     cctgaatttg ttacggtatt ttgcgctata agtatgatat gcagtacgat agacagtaaa       300
     atcctgaaac taagaaaaat ttgttctagt ataggttatt aagagcacta cgtctcagat       360
     attgtcctca gatccgattt ctgaaatacc cattgtgctt tggctgtaag ttacttctga       420
     tttaacaatt tgatctaagc aaactgaatt aaatactcca atagggatcc tctagttacg       480
     catcgaaatc aagtttgttg gggatcaatc gaattaaggc gaccagttgt aagtaaacat       540
     gaatttattg cctgcgagtt aaacttataa ataaacactt tacagcttaa agaattctgc       600
     actgaaaacc atcgtgcttc tctgttaaga ggtcccgaaa aatctcccca aca              653
//
ID   BEL-152_AA-I repbase;    DNA;    INV; 7451 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-152_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7451
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7451
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
DR   [2] (Consensus)
XX
CC   A rebuilt sampled sequence. Flanking LTRs are 97% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           770..6106
FT                 /product="BEL-152_AA-I_1p"
FT                 /translation="MYSKMTSNLRGLQKRERQLFNTLDGTERFLMNYNPEK
FT                 QAQVRMQVLDAAYSEFFEVRQKIDLLLDELAVDEEPDVKAEETQQAKNLET
FT                 LSNFEDRYFIAKVEILKLLEKNAVQVPVEAGAAAQVATFPRVKLPEIKLPT
FT                 FSGKVRDWITFRDSFLSLIDSNTQLMEMDKFSYLRSSLSGEALQEISSVEL
FT                 SAANYAVAWQALQLRCENKKLIVKAHIDALFAVEGLKKESYDGLNHLIREF
FT                 EKNLQMLDKNGEKTANWSTILVHMVCSRLDPATLRNWETHQNSKNVPTYQN
FT                 LIAFLRNHCEVLQSVAPPTSSYGDQHQRSSKPTVCQTIVRSSGRCIFCNES
FT                 WHSAFQCAKFQRMKVAERNEVVARARLCRNCLKPGHLARTCERGECRHCHQ
FT                 KHHSMLHGGEMRSSVPHSQSIPPVQSQQLQQPQSSSATTNQHTHNTNTATS
FT                 ANSQYMHTRSTTEQTPTSSQNLVSLPVIPTQNILLYTALVKIHNRYGKPII
FT                 ARALLDSCSQHCLMAKSFSNKMSFRESPSYLSVQGIGPSQSVSSKSVTALV
FT                 CPRSTTVSEYAEEMQFHVLPKLTVSLPITAVDSSRWNLPKHMILADPRFHE
FT                 PGPIGAEYYMDLLCDERLKVTIDCPTLQRTVFGWIVSGRVPGNSVQSPVSL
FT                 AHVCSTAEIQDQLTKFWELETCRIISTHSTEETACEEIFDKTTVRDEDGRF
FT                 VVALPKKEHLISQLGESRSVAIRSFMGMERRFAANPQLKEEYVKFIREFED
FT                 LGHMEEITGHPPEDKEYNLPHHAVLKPDSTTTKLRVVFDASCRTSSGVSLN
FT                 EALMIGPVVQDDIQDISLRFRLHRYALVGDVAKMYRMILHHKDDRRFLKFV
FT                 WRNQTSEPIRTYQLKTVTYGTASAPYLATKCLQRLSEEGEAAYPVAAKVVR
FT                 KSFYVDDMLSGADNIEEGKVLIQQMISLLQSAGFTLRKWNSNSSELLEIVP
FT                 EDLRDGRTILELESGHATVKTLGLMWETDSDQFKFSTPEWNSSPVISKRSV
FT                 LSDISRLFDPLGLVGPVVVQAKLFIQDLWKNQSGWDDPLDNSLQEQWQEYK
FT                 RNLTSLDTLTIPRWVGYSRNVVAVEYHGFCDASNKAYGACIYLRSISETGG
FT                 VSVHLLSAKSRVAPLHNPKKVEKTENIPRLELSSALLLAHLYEKVRNALNL
FT                 DARSFFWTDSMIVKCWLSSSPSRWKQFVSNRVSEIQHITMGGVWNHVPGIE
FT                 NPADIISRGMTAAQLQYEKSWFHGPCWLQLEQKHWPNDRGVEEDEIRKEVL
FT                 EEKSVTVALPTATPSEVFSWKSSLTDLVRIVVFIDRFRSNARQENRNNRRV
FT                 GAITSQEMDGALKKLVRISQKESFPQEIAELTRKREVPESSKITRLHPELN
FT                 DGIICVGGRLKHAEISASRKHPYVIDHRHPFARLIVVHYHRKHLHAGQQLL
FT                 IAAMRELFWITSVRNLVRSVLHECVPCFRVRPKVHEQLMADLPPERVTPCL
FT                 PFLRVGVDYCGPFSVRYPQRRAQPVKCFVAIYVCLVTKAVHLELAADLSTQ
FT                 GFLTTLKRFMARRGKPQIIMCDNAKNFVGARREIAEVHNLVKSKDFQSCVV
FT                 QRAAEDQIDFKFIPARSPNFRGLWESAVKSFKTLLKRSIGVQVLTYDEMQT
FT                 MIVQIEAVLNSRPLTPLSNDPDDFEALTPGHFLIQRPLTALPEPDLDGVPE
FT                 NRISTLQRIEQIMQRLWQKWSTQYLSDLHNRTKWTKRRDNITVGTMVVLKE
FT                 DNLPPLKWPLARVTEIHAGADGNIRVVTVQTKDGNYRRAISKICILPIRDN
FT                 LSTPDEEN"
XX
SQ   Sequence 7451 BP; 1973 A; 1841 C; 1864 G; 1773 T; 0 other;
     tttggtcctt cgagccggat cagacggtta actttcggac tcggaacatt gactctggac        60
     tgtgaagtga accgcgaaaa tctgccgaaa cggcaaacag tgtgtgcact tttctcccca       120
     cggtggcttg cgctgaagag caattgtggg tcgcagaaag tgccaaagtg cgtgaagaaa       180
     tcacttaata aatcgtgcca aaaaattggt ttgtgattgt gcgttgccgt gatattctcc       240
     gtggccatct tccccctggg gatattgtta gaaaagcgtc attgagcgtt aattcccgcg       300
     ccgccgtggg tagcgccatc gttttttcac catcgccatc gagccaacgg taggacccaa       360
     cgataggacg gctgattgga gaaggacagg gaagtactgt gcatgatttt gcgacaaaat       420
     gcatgtggct aaatataaaa taaatgcgtg atttgcatgc gagtttttca ttattggcaa       480
     gtagccctgt gtctgtctaa aaatttggtg gtctgattgg gttcgttgaa ttttcggctc       540
     atttaaatta tttttggttg tttcccttcg ctgctatcac ctgttgggtt gcaagtcatt       600
     ccgctgttgt ttcgcggttt cgagtcagtg gaacgtcgag ttgatcggga gtgaaagtgc       660
     attagtgaat ttggtggcag tgtttgaatt cgaacaggat cgaataagat cgatgctgat       720
     cacagtggag tgaagtggat agattttttg ccatactgtg aaagtgctga tgtactccaa       780
     gatgacgagc aatttgcgcg gtctacagaa acgggaacgg caactattca acacgctgga       840
     tggcacagag cggttcttga tgaactacaa tccggagaaa caggcccaag ttcggatgca       900
     ggttctagat gcggcgtaca gtgagttctt tgaagtgcgc cagaaaatcg accttcttct       960
     ggatgagctc gcagtggatg aagaaccaga cgtgaaggca gaagaaactc aacaggcgaa      1020
     gaatttggag acgctgagca actttgaaga tcgttacttc atcgccaagg tggaaatcct      1080
     gaagttgttg gagaagaatg cggttcaagt gccagtggaa gccggggcag ctgctcaggt      1140
     tgcgacattt ccgagggtga agttaccgga aatcaaactg ccaactttca gtgggaaggt      1200
     tcgtgactgg atcactttcc gggacagttt cctgagcctg atcgacagca acacccagct      1260
     gatggaaatg gacaaattca gttatctgcg gtcgtcccta tctggtgaag cgttacagga      1320
     gatcagttcg gtggaactct ccgctgcaaa ttacgccgta gcgtggcagg cactgcaatt      1380
     gcgctgcgaa aacaagaagc tgatcgtgaa agcccacatt gacgctctct tcgccgtgga      1440
     aggactaaaa aaggagagct atgacggact caaccacttg atacgtgagt ttgagaagaa      1500
     tctccaaatg ctcgacaaaa atggcgagaa aacggcaaac tggagtacta ttctggtgca      1560
     tatggtgtgc agtcgattag atcctgccac tttgcggaac tgggagacgc accaaaactc      1620
     caaaaatgtc ccgacttacc agaatctcat cgcctttctt cggaaccact gtgaagttct      1680
     tcaatcggta gctccgccga cgtccagcta tggagatcag caccaacgat cgtctaagcc      1740
     gaccgtttgc caaactattg tcaggtcttc cggcagatgc attttctgca acgagtcctg      1800
     gcattctgct tttcagtgtg cgaagttcca gaggatgaag gtagctgaac ggaacgaagt      1860
     agttgcaaga gcgcggttgt gtcggaattg cctcaaaccc ggacatttag ctaggacatg      1920
     cgagcgagga gaatgccgac attgtcacca aaagcaccac tccatgttgc atggtggaga      1980
     aatgcgatcc tccgttccac actcgcagtc aataccgccg gtgcaatccc aacagctaca      2040
     acagccacaa tccagttcag cgacaacaaa ccaacataca cataacacca acacagctac      2100
     ctctgccaac tcgcagtaca tgcacacacg atcaaccaca gaacaaactc caacctcaag      2160
     tcaaaatctc gtttcactgc ctgtaattcc cacacaaaac atactcctgt atacggcact      2220
     tgtcaagatc cacaatcgct atggcaagcc tattatagca cgagcgttgc tggactcttg      2280
     ttcccagcat tgcttaatgg ccaagagctt ctcgaacaag atgagcttcc gagaaagtcc      2340
     ttcgtatctg tcggtccagg gaatcggacc ctcgcagtcg gtgtcctcga agtcagttac      2400
     agcgttggtt tgtccacgat ccactactgt ttcggagtac gcagaggaga tgcagttcca      2460
     tgtattgccg aagctgactg tttcgctacc aattaccgct gtcgattcat caagatggaa      2520
     cttgcccaaa catatgattc tggcggatcc acgtttccat gagccgggcc caatcggagc      2580
     cgagtactat atggacctgc tttgcgacga gcgacttaag gtgacgatag attgtccaac      2640
     tcttcagaga acagtgtttg ggtggatagt ttccggccgt gttccgggaa attcagtgca      2700
     gagtccagtt tccctagccc acgtgtgctc cacagctgaa atccaggacc agctaactaa      2760
     attctgggag ctagagacct gcagaatcat cagcacccat tcaacggagg agacagcttg      2820
     tgaagagatc ttcgacaaga ctacggttcg ggatgaagat ggacgatttg ttgttgctct      2880
     cccgaagaaa gaacacctta tcagccaact cggtgaatca agatcagtcg ctattcgaag      2940
     cttcatgggg atggaacgtc gatttgcagc gaaccctcag ttgaaggagg agtatgtaaa      3000
     gttcattcga gaattcgaag atctgggaca tatggaggag attactggcc atccaccgga      3060
     agacaaggag tataacctgc cacaccacgc ggttctgaaa cctgacagca caactactaa      3120
     gctgcgagta gtgtttgatg cgtcctgccg tacatcaagt ggagtttcac tcaacgaagc      3180
     tttgatgatt ggaccggtag tccaagacga catccaggat atctcacttc gttttcgtct      3240
     gcatcgttac gcgcttgttg gtgacgttgc aaaaatgtat cggatgatcc tgcatcacaa      3300
     agatgatcga cgtttcctga agttcgtgtg gagaaatcag acaagtgaac cgatccgtac      3360
     gtaccagcta aaaacggtca cgtatggtac agcgtctgcg ccatatctgg ccacaaaatg      3420
     tttgcaacgt ttgtcggaag aaggagaagc agcatacccc gtagccgcca aggtcgtcag      3480
     gaaaagcttt tacgtggatg atatgctctc cggtgcagac aatatcgagg aaggaaaggt      3540
     tctgatccaa cagatgatat cgctgcttca atccgctgga ttcacactac ggaagtggaa      3600
     ttccaactcc agtgaacttt tagaaatcgt accagaagat ttgagagatg gtcgaacgat      3660
     tttggagctg gaatctggac atgctaccgt caaaacgttg ggtctgatgt gggagaccga      3720
     ttcggaccaa ttcaagttca gtaccccgga gtggaactct tcgcctgtca tttccaagcg      3780
     gtctgtgctg tcggacatct cccgtctttt cgatccactc ggccttgtag gtcctgtggt      3840
     tgtgcaagca aaactcttta ttcaagacct gtggaaaaat caaagcggat gggatgaccc      3900
     cctagataac agtctccaag agcagtggca ggaatacaag cggaatctca ccagtctcga      3960
     taccctgacg attcctcgtt gggtcggcta cagtaggaat gtcgtcgcag ttgagtatca      4020
     tggattctgc gacgcgtcca acaaggccta cggcgcttgt atctacctgc gttctatctc      4080
     ggaaacgggt ggagtttcgg tgcatctact gtcggctaaa tcccgagtag ctccactaca      4140
     caacccgaaa aaagtggaga agaccgaaaa cattcctcgg ctagaactat cgtcggcctt      4200
     gttactcgcg catctgtacg aaaaggtcag aaatgctctg aacctagatg ctcgatcgtt      4260
     tttctggacc gactctatga ttgtgaagtg ctggctatca tcgtcacctt ctaggtggaa      4320
     gcagtttgtc tccaaccgag tttctgagat ccaacacatc acgatggggg gagtttggaa      4380
     tcacgtccct ggaattgaga acccagcaga cattatatca cgaggcatga ccgcagcaca      4440
     gctgcagtat gagaaatctt ggttccacgg tccgtgctgg ctacagctag aacagaaaca      4500
     ctggccgaac gatcgaggtg tggaggaaga cgaaattcga aaggaagttc tggaagaaaa      4560
     aagcgtaacg gttgcgcttc ccactgctac ccctagcgaa gtctttagct ggaaatcttc      4620
     gttgacggat ctcgttcgga tcgtcgtgtt catcgaccgg ttccgctcga acgcgagaca      4680
     ggaaaaccgg aacaatcgac gagttggtgc aattacgtcg caggagatgg acggtgcgct      4740
     gaagaagtta gttcgcattt cccagaagga gagtttcccg caggaaatcg ccgagctgac      4800
     tagaaaacga gaagttccag aatcgtcgaa gataacgcgg ctacatccag agctgaatga      4860
     tggcataatt tgcgttggcg gccggctcaa gcacgccgaa atatcagcaa gtcgcaagca      4920
     tccgtacgtt atcgatcacc gacacccgtt cgccagactc atcgtagtgc actaccaccg      4980
     gaagcatctt catgcgggac agcaacttct gatcgccgca atgagagagc tattttggat      5040
     cacgagtgtc cggaacctag tccgctctgt gctgcacgaa tgcgttccgt gttttcgagt      5100
     gcgtcctaaa gtccatgagc agctaatggc agatctacct ccggaacgag tcactccctg      5160
     ccttcccttc ctgcgtgttg gagttgacta ctgcggaccg ttctcagtta ggtacccaca      5220
     acgtcgtgcg caaccggtaa aatgtttcgt cgcaatctat gtttgcttgg tgacaaaggc      5280
     agttcactta gaactggcag cggatctgtc aactcaagga ttcctgacaa cactcaagcg      5340
     tttcatggct cgtcgaggca agccgcagat catcatgtgc gacaatgcga aaaacttcgt      5400
     tggcgcgaga cgagagatcg ccgaagttca taatctcgtt aagtcgaagg attttcagag      5460
     ctgcgtcgtc caacgtgccg cagaagacca gatcgacttc aagttcatcc ccgcacgatc      5520
     gccgaatttc agagggttgt gggaatcggc ggttaaatcc ttcaagacgt tgctgaagcg      5580
     gagcatcgga gtgcaagtgc tcacgtacga tgaaatgcag acgatgatcg tgcaaataga      5640
     ggccgtactt aattccagac cgctaacacc cctcagcaac gatccagacg atttcgaagc      5700
     gttgacaccc ggacacttcc tcattcaacg acctctaaca gcgttacccg aacctgacct      5760
     ggatggagtt ccagaaaatc gaatttcgac gttgcaacgg attgagcaga tcatgcagcg      5820
     tttgtggcag aagtggtcta cccagtatct gtcagacctg cataaccgaa cgaagtggac      5880
     aaaacggaga gacaacatca ctgttggaac aatggtggtt ctcaaagagg acaaccttcc      5940
     tccactgaag tggccactag cgcgtgtgac cgaaattcat gctggcgcag atgggaatat      6000
     tcgtgtcgtg actgtccaaa ccaaggacgg taattatcgc agagcaattt ccaaaatttg      6060
     cattctaccg atccgagaca acctttcaac accagacgag gagaactagg actcctccaa      6120
     cggcgggggc caaccggcct ccgcatacca gttaagttat gtattgttta aacttgcaaa      6180
     aagttaatcc aaattctttt tcgcagtcac gaccccccat ttcccctctc agcacgaaac      6240
     gctgaatctc gagttgtctc tgagcctatg aggtaatctg ttttgtccgg tggtggttcc      6300
     ttgttgcatg agcaatcaat tcctgttcct gtctggcttt tctggaagcc acagtggcgc      6360
     ctagcgcccg cactgcgcgg cagtgctctg tcagtacatc gtactcattc cagttctgtt      6420
     tgaacttctc gaggtactct ccgcaataac tgcaatacgg ggaaggagtg tacaatccaa      6480
     cccctggccc aagtagtagt cgtcaacgag cttggccagt tcgtccatcg attacaacat      6540
     cgttcagcca ttcggagcag tgaaggagaa agtctaccgt cggaatgtaa tcgtttgcgg      6600
     aagttcatcg acgccagagg gcgtccgcgg aggccacgag ggcctccgtt ccaggcaagt      6660
     tgttttttgt aacataaatt caatctaatt agcacccgct catctgattc cagagaagcc      6720
     accaccagtc gaacatctgt tcgaccgttc cgtcagcctt agccgcagag gcagctgaaa      6780
     cctccgatcg ttcgattccg tcagtcagtc cggccacaaa ggcaactgaa aatttgcacc      6840
     caatcgaacc actccgtcag tcgtgccgca gagggaactg aaatctccgt tctatcgaag      6900
     cacattgtca gccctgccgc cgaggcagct gaaatcatca tccgcagaaa ataccatccg      6960
     tttgtcatgc tacaaaacca ccgttcagca tctccgtgtc atcaacatcg tttgaagcat      7020
     cgtcgaagta ctggacagcc ctgacagaca gactattgag gaaattatca ttaggcagcc      7080
     aaaaaggtct gccaggtaag ttgttccggt tttatactgc acttctccac gatactatat      7140
     ctccgatttt caccatcccg aggaaaaccg ttaccgatga aatacgctac gagccaacta      7200
     ccaccagcag cagcatccaa gtcagctgat cgatgtaggt catggtcagc ccgtcccagc      7260
     atcagcggca gcacaatagc agcccagatg accgaaccca gtcatccagt cggtcgactg      7320
     cagaacaata tgttacttaa aagtgtgtta ttttcatatc tagtatataa gtcagtagta      7380
     gtttagcaga aaagtcgata gctagaggca ggttgtgatt gaaattgggg catttcaagg      7440
     cggccggcaa a                                                           7451
//
ID   BEL-152_AA-LTR repbase;    DNA;    INV; 406 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   24-JUL-2020 (Rel. 25.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-152_AA_;
KW   BEL-152_AA-I; BEL-152_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-406
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-406
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JUL-2020).
XX
DR   [3] (Consensus)
XX
CC   [3] Replaced by a consensus of full-length LTR sequence. ~97%
CC   identical to the consensus.
XX
SQ   Sequence 406 BP; 111 A; 89 C; 89 G; 117 T; 0 other;
     tgttgaagcc aaaatcaatc agccactaca gcccgaccga agggaatagt gaatgaccaa        60
     atgcgatcca caactactgt aggtagggtg atctttttct gctacacgca tttggtcagt       120
     ccgtcccact tgttcatgtt cgtttttgtg atatctatat gtatgtacat tcccttgcga       180
     tcgcttctcg atcgccagcc agccagcaat cagctggcag ttgaaaataa accgtcgcga       240
     tctgcacatc gccgttcggc cgtataagac ggcaataaat tactgtttgt gttcgcgtga       300
     aataaagtgt agttctgttc ttcgtttaaa taaactgttt aagtgtttaa atgtaaaaac       360
     ggattattag tgcagtgtcc gaaagaccgt aaagtgcgcg cgaaca                      406
//
ID   BEL-154_AA-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   supercont1.336;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-154_AA_;
KW   BEL-154_AA-I; BEL-154_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-314
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.336; Positions  984605  984918.
XX
SQ   Sequence 314 BP; 92 A; 75 C; 64 G; 83 T; 0 other;
     tgtctacgac caacaaaacc tacttatccc tcattactct actggtgcaa tggctagcgc        60
     aagtcggcag atattatata attaccacaa caataagttt attaatctcg ctaccgtggt       120
     cggaaataat aggcttccag cgccagagat attgccatcg tctggatgta ggaccacagc       180
     actatcacta tcactcgata gatcgatagt cgatcgatta acggcgataa gagagtgaga       240
     tcctcactct tttagcaggc agatctaccc atctattttg agtgaagaaa ccagtcgatt       300
     ttgggtcgcc ggca                                                         314
//
ID   BEL-155_AA-I repbase;    DNA;    INV; 5958 BP.
XX
AC   AAGE02018864;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-155_AA_;
KW   BEL-155_AA-LTR; BEL-155_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5958
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018864; Positions   20387   14430.
XX
CC   'GTACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2105..3826,3830..5446)
FT                 /product="BEL-155_AA-I_1p"
FT                 /translation="MKIDMIVVPQLIDDQPSIHLEARDVQMPANVELTDPT
FT                 FYKRRCVEIILGARVLFQILGPRQMRCDGGPNLQESALGWLVGGLASLRTP
FT                 RTATMAIATVSADEQTVPDDEENAYEHLDTLFKRFWALEEVTSAEATSTSN
FT                 KVNKCEEHFLQTTTIGADGKYVVRLPFKDTLVNLGNSYEHAKRRLFSLERR
FT                 LARTPELYDQYREFLNEYLDLKHMEVVDSKDFSRIGYFIPHSCVIKPDSTS
FT                 TKLRVVFDASAKSSNGYSLNDLQLSEPAAQRDLFELLLDFRRHDKVVTADI
FT                 AKMYRQVNVHEQDSWLQCILWRDNPSHKIQAYRLKTVTYGEAAASFLACRV
FT                 LHQVGEEIRPQQPNISKIIQQCFYVDNLMMGGDSAEVLLNQRKAVEAALIK
FT                 RGFPLRKWASNDPSIISDVATEDLEKEIHVGDHDIIKTLGVAWPPQNDSFR
FT                 FLVDDRNSSRTTMTKRQLASEVLRLYDPLGIMQPIIITAKILLQGMWKTRL
FT                 KWEDHIPDETLHEWQQLKKTLPKLAELEFPRQAIPSNATDLELHGFSDAST
FT                 RAYGGAIYAFATDSNGNKTMNLLCAKAVVPLKDLKVTSEKDTSTEPTDDIT
FT                 LPRKELIGAKLLAELMNRVISIIPQHIDKVHYWCDSQVVLAWIHSEEQHKE
FT                 VYVRNRVKIIQGLTNKRNWNYIPTDQNPADTISRGISVRKLLTTKRQLWLH
FT                 GTTYVLAAPPNEHMPALKQTPIYVAVTTHATDIDLEDYVQRYKYSNSLPKT
FT                 RRHFALVRRAMNNFMVRSETLKNKRIHLKNATGPLTTEELDSGMRLIIRNM
FT                 QATCLKDELLNIRAGGQHNKQGPLQHLNPIIDDGLIRVTGRLNLADLTENQ
FT                 RNPILIPREHPFSRIMIEHFHKANNHAGLEFVLAEFQRNYWMRGLRKTAQA
FT                 VLQKCILCVRARPRRFEQQMGQLPRPRVNPSTAFTHTGVDLCGPFQVLPSQ
FT                 RAKTRLTVYACLFVCFSTKAVHIEVVENQSTAAFIAAMIRFVSLRGRPEVV
FT                 YSDNGRIFVGASRELTELRKIYNNEVFQNEIVGIAAEQGINFSFIPPRSPN
FT                 FGGLWEANIKVAKKLFTAAARGASFNILEIQTVFYQIAAIMNSRPLTSVLS
FT                 NVGAP"
XX
SQ   Sequence 5958 BP; 1850 A; 1415 C; 1390 G; 1303 T; 0 other;
     ttggtgaccc cgacgtgata agattcttat cactcctaaa tcgcgttcgt gtgaacaaga        60
     gaaaagtgtt ccatgtcttg ccggcggtgt caaaattgaa cggccattta gtgctaaccc       120
     aagtgacttt ccgagtagaa agaaatcaac aacccaactg ccgacggtgt caaaattgaa       180
     tggcgtctag tgcaactcaa gtgattttcc gaaagaaaag tgatcaataa atcaaccatc       240
     gacggtggca aagtgcaacc caagtgactt tccgagggaa aagtaattaa taaatcaatc       300
     gccgacggtg gcaaaggtga acggtgttct atcgcaaacc caagggactg tttgagtgga       360
     aagtgatcaa taaatcatcc gccgacgggg gttgagttga gcggtaatca aacgtaaatc       420
     taagtgacct ctcgcgcaga agtgacaaag aaaccaagaa attagctgcc gacggcggca       480
     aggtgtaggg aaattaagtg aaaaccgtag tgagcacctg cgggcatcaa tcatgaaatc       540
     agagtgcctg gttaacttgc cgaagcgaaa tcccaaatta ttgtgtcctg catcgtgatt       600
     ttacaagtga ctgaaatcta gtaagtaact gactaaagtg gtccaccatg gacgaagaag       660
     aactaaatga ggtaaaaaat cagcttgctg ctctagagag cggtatcaag aaaatgaaca       720
     ccgatctaga caaaataact tcagcaaacc ggcccagtcg gtcggaagcg aagactaaag       780
     actaaagtgc acgtaaccgc gaagtgcaag ctcgacaacc tgcagcagga gctggagcct       840
     gtagatcgca cagcccctaa tatgatggag caaacattta tgcaagctcc aaaccgagca       900
     gatcacttac cacgaatcga attacctcga tttaacggtt ctccaaccga gtggttagcc       960
     tttaaggctc ggttcgagaa gaggattgcg acaatcggtg acgacgccga taaatacgca      1020
     ttcctctcaa agtgcctaga gcactttgag cccgcccgca actcaattga tgcccttgag      1080
     aatgcagggt cgagtttcgc agaagcttgg gcaaagcttg aaactcgttt ttacaagaaa      1140
     cgaatagcct acgaaggcca tttcgtcaaa ctcataaagt tcaaaaaaat taattcgccc      1200
     aacgcaaagg ccatcttggc actgatcgac gccgtggata cgacggtcca cgcagcgcaa      1260
     caaatagaaa acgaagtagg acaagatttg gactgcgtgg cgaatggcct gttagtaagc      1320
     ctggctaagg ctcgattgga cggggaaaca gcgtccaaaa tcgaagaacg catggacatt      1380
     caccgcgttt atacatgggt gtaattcaag gaagaattgg agaaaagggc taaccaacta      1440
     gcatgtcact ccgatttcga ggagcataaa cctcgaaatg tcaaaacggt agcggccgca      1500
     tccgtcgctc agccacagag aaataacaac gaaggtaaat catcaaaagg tctacaggat      1560
     aagcctcaac aacaatcctg ttttatgtgt ggggaaaaag gacaccccat ttggttctgt      1620
     gtccgattta aggagctctc tcctgcacag aggtgggata aaacaattaa gtcccgccgg      1680
     tgtttcaatt gtatttccag ggggcattcc taccaaaaat gcccctcttc taaacgatgt      1740
     catgaatgtg gtgagccgca tcacacgctg ctgcataggg aagacaacgc cacggagaag      1800
     aaacctgttg ctgattccgt ggtccaggct tcaacaagca gtaaccagtg actgaaggag      1860
     gaatacgttt tcttagcaac tgctgagcta aacgtcaaag gtgcttctaa ttggtaccaa      1920
     acttctaatt ggcacctgcc tgttggattc tggaagtcaa atcgaatcga ttactgaaga      1980
     ggccgcccaa accctggggc taccttactc ccggagcaac ttacagatca atggaattgg      2040
     tggaagagtc aacgcttcaa ggcggattac gaccaccata tcatcgcgat gcggtaagtt      2100
     tactatgaaa attgatatga tagttgtacc acagctgatt gatgaccaac cgagcattca      2160
     tctcgaagct agggatgtgc aaatgccagc aaatgttgag ctgaccgacc cgacatttta      2220
     caaacggcga tgcgtcgaaa taatacttgg tgccagagtg ttattccaaa tattgggccc      2280
     caggcaaatg agatgcgatg gaggtccgaa cctgcaagaa tctgcgctag gatggctagt      2340
     aggtgggctc gcttctctgc gcacaccaag gacggccacc atggccattg ccactgtttc      2400
     cgctgacgag caaacagttc cagatgatga ggagaatgcc tacgagcact tggacactct      2460
     cttcaagcga ttttgggcct tagaagaggt aacgtctgcg gaagcgacat ctacttccaa      2520
     caaggtcaac aagtgtgagg agcactttct gcagacaacg acgatagggg cagatggaaa      2580
     atacgtcgta cgtctcccat ttaaggatac gcttgttaac ctaggcaatt cctatgaaca      2640
     cgcaaagaga cgcttgttct cactagaaag gaggctcgca aggacacctg aattatacga      2700
     ccagtataga gaattcctga acgagtacct ggacctaaag catatggaag tcgtagactc      2760
     caaggacttc agtagaatcg gctatttcat accgcactct tgcgtaatca aacctgattc      2820
     aacttctacc aaattgcgcg tcgtcttcga tgccagcgcc aagtcatcca acggatactc      2880
     cttgaatgac ttgcaattaa gcgaaccagc agctcaaaga gaccttttcg agctacttct      2940
     agactttcgc cgccatgaca aggtagttac ggcggacatt gcaaaaatgt accgtcaagt      3000
     aaatgtccac gaacaagatt cgtggcttca atgcatcctc tggcgagata acccatcgca      3060
     taaaattcaa gcctaccgtc tgaaaacggt cacttatggc gaggcggccg catcattcct      3120
     agcatgccgc gtcttacatc aagtagggga agaaatccgg ccccaacagc caaacatttc      3180
     gaaaataatt cagcaatgtt tctacgtgga taatctaatg atggggggag attcagcgga      3240
     agtcctacta aatcaacgta aggctgtgga agctgcacta atcaaacgag gattcccctt      3300
     acggaaatgg gcatccaacg atcctagcat catatcagac gttgcaacag aggatctaga      3360
     aaaggaaatc cacgtaggag accatgatat catcaagaca ctaggagtgg catggcctcc      3420
     acaaaacgac tcattccggt ttctggtaga cgatcggaat tccagcagga caactatgac      3480
     caaaaggcaa cttgcctcgg aagtacttcg gctatacgat ccactgggga ttatgcagcc      3540
     catcatcata acggcgaaaa ttctactgca aggaatgtgg aagactcgac ttaagtggga      3600
     agaccacata ccggacgaaa cactgcatga atggcagcag ctgaagaaaa ctctgcccaa      3660
     actggctgaa ttggagtttc cacgccaggc aattccgagt aacgcaacag atctggaatt      3720
     gcatggattt tcagacgcgt caacccgcgc ctacggaggc gcgatctacg cattcgcaac      3780
     ggattcaaat ggaaataaga caatgaatct gctctgtgcc aaagcatgag ttgtaccctt      3840
     aaaggacttg aaagtgacat ctgaaaagga cactagtacg gagccgacag atgatattac      3900
     tcttccgcga aaggagctga ttggtgccaa actgctagcg gaattgatga accgagtgat      3960
     cagcattatc cctcaacaca ttgacaaggt tcactattgg tgcgattcac aagtggtgct      4020
     agcttggata cattcggaag agcagcacaa ggaagtgtac gtacgaaatc gagtgaaaat      4080
     cattcaagga ttgacaaaca aaagaaactg gaactacatt cctactgatc aaaatccagc      4140
     cgacaccata tctcgaggta tttcagtgag gaagctactc actacgaaaa ggcagctgtg      4200
     gcttcatggc accacatatg tattagcagc acctccaaat gaacatatgc cagccctcaa      4260
     acaaacgcca atttacgtag cagtaaccac tcatgctact gacattgact tggaagacta      4320
     cgtacagaga tacaaatatt ccaactcgct acccaaaact agaaggcatt tcgctcttgt      4380
     acgacgagcg atgaacaact ttatggtccg atccgaaact ttgaaaaaca agcgaattca      4440
     cttgaaaaac gcgaccggtc ctctaacgac cgaagaatta gactcaggaa tgcgcctgat      4500
     aatcagaaac atgcaagcca catgtttaaa ggacgaattg ttgaacatcc gcgcaggtgg      4560
     tcaacacaac aagcaaggac cattacagca cctcaatccc atcattgacg atggattgat      4620
     tcgagtgact ggtaggctca atctagccga tttgaccgaa aaccagagaa atccgatact      4680
     aattccgagg gaacacccct tctccagaat aatgatagag cattttcaca aggcgaataa      4740
     tcatgccgga ttggaattcg ttctagctga attccaacgc aactactgga tgcgaggact      4800
     taggaaaacg gctcaagccg tcctccagaa atgcatactt tgcgtacgag caaggccacg      4860
     tagatttgaa caacaaatgg gtcaattacc acgacctagg gtaaacccat ccacagcttt      4920
     tacacatact ggagtggatc tgtgtggccc cttccaagtt ctgccctctc aaagagcgaa      4980
     aacgagactt accgtctacg cctgcctttt tgtatgcttc tcaacaaaag ctgtacatat      5040
     tgaagtggtg gaaaaccagt ccaccgcagc attcattgcc gctatgattc gctttgtatc      5100
     attacgtggt agacccgaag tggtctactc cgataacggc cgtatcttcg tgggagcaag      5160
     ccgtgaacta actgaactaa ggaagatcta caacaacgag gtatttcaaa acgaaatcgt      5220
     agggatagcg gctgaacagg gaataaactt ttccttcatc ccacccagaa gcccaaactt      5280
     tggagggctc tgggaggcaa atataaaggt ggccaagaag ctctttaccg cagccgcgcg      5340
     cggtgcaagc ttcaacatac tcgaaataca aacggtattt taccagatag cggcgataat      5400
     gaactcccgg ccgcttacat cggtattgtc caacgtggga gccccttaac ccttgactcc      5460
     gggacatttt ttgataggta gagctatgac agctgtacct ataccaatga gtcacttgga      5520
     agaaggcagt ctgcccatgc gctggaggcg cattcatacc caaaccgcac atttttggcg      5580
     taagtggcaa catgagtatc tgcaacactt gcgctgctta tccaagtgga ccaagaaaca      5640
     acctaatgta caaccaggcc agatagtcct gataggagat gacaacaatc cggtagctaa      5700
     atggcctatg ggaattgtga tccatacaca aagaggaccc gatggaattg tacgtgtagc      5760
     cacagttcgc gtcggatcga acgtatacaa acgaaacgtt aggctgctgg cacctctgcc      5820
     tatcgaagtg tcagcaatca atcactgcgc aaacgaggtc agctcagaaa atgtacaaga      5880
     aaacaactat gattcatcct ccctcactgc tgtcaggaat tcttggagcg acagacttcg      5940
     ctccaagggg ggagaaaa                                                    5958
//
ID   BEL-155_AA-LTR repbase;    DNA;    INV; 651 BP.
XX
AC   AAGE02018864;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-155_AA_;
KW   BEL-155_AA-I; BEL-155_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-651
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018864; Positions   14429   13779.
XX
SQ   Sequence 651 BP; 191 A; 159 C; 159 G; 142 T; 0 other;
     tggtgtgcca aaaacattgg ccaccagtgt agcgatcgaa cgatcgccat caaccgatga        60
     agcaagcgaa aaacatccgg tcggtcggtg gtccgaagtt gcatcagcct gaccgatgga       120
     ctccacaccg acatactgta acatcagcag tttccacgcg ctgccttttc aactataaac       180
     gaggcagcaa caatgtaagt cgcagtagca acagaaattt cgacgaagca ccgcacgtaa       240
     taggagacat gtggccgttc tcaaatgaca acccagaagt caccgtggag aataacatct       300
     ccacgcacac gatggttggg tacaccattg ataccctctt cgtagtcatc atcatcatca       360
     tcgtcattgc ctggcgatgg cggaaaaatg cgcgccgact caaggcggtg gagagtgcag       420
     caaaacggct gcatcatcaa aatcccgtac aactcaaact ctgtagataa aatgaaataa       480
     atgaataagt tagtctcaac tcagaattca agcgtgtcgc gtcgtttcta gtatcacggt       540
     cttgtgatcg agctaggtgg ggctagttcg agactaatta atttcgatta acgatcgttc       600
     ggtggaagcc ctagcgggag cggggccaat cgaaggttgt ttgctagaac a                651
//
ID   BEL-156_AA-I repbase;    DNA;    INV; 6614 BP.
XX
AC   AAGE02017627;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-156_AA_;
KW   BEL-156_AA-LTR; BEL-156_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6614
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017627; Positions    7225     612.
XX
CC   Positions [4341-4922] - Integrase core
CC   'GGGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..3528
FT                 /product="BEL-156_AA-I_1p"
FT                 /translation="MSKLVKNPNGHCKLCTNKDSMDNMVECDDCDRWYHLS
FT                 CAKLDRSPTAEESWICEHCADIQRKWYKQGAAAIEKKIATQKQTENKSPNS
FT                 NEQILQELTNAITSAFKQVKVEPEERTPVNQANDWTIYLKRQALISLPKFN
FT                 GSSKEWPKFEKIFNDTTQEGNFSPLENLNRLQQSLEGIAARCVSQLMMDAG
FT                 NIPQIMERLKLNFGRPEIIYNELVTELSKIRKENRMAVVDISEALGNLVSN
FT                 LELINFQDYLRDPRLVNETVQKLPYNLQVKWAEERQANGPVATLKELYTFL
FT                 TPHAKISRIMQNAATPAPRKTINIHHDIRQQDRQHDNHSRGPQCGNCSGHR
FT                 ITDCQLFRDMDTKKRNEVVRTNKLCIGCLSPFHFFKNCNRSRRCGLNGCNK
FT                 NHHSWLHDKQETRKPPTVPPTEKKDNDQKPLTTTTQNDEKLVGHHRIKRSK
FT                 ILYQIIPVTLKNGSKSVDTYAFLDAGSSATLVDRSIVDTLELEGRNDPLHL
FT                 TWTQDISKDEDNSMNVELQISGSSKKLYTIKNVRTTKNLQLPRQTVDFEKL
FT                 KQKFSYFKDLPITSFTNERPMILIGIEHSHLLIPLERRMRKWNEPIAVKSK
FT                 LGWFLFGNISASVQHEYAMIHHEEEMTKLMKSYFSTEDFGVKISENSLKSE
FT                 EEKRVVNIMEKTVKYTDGRYEVGLLWKDDDIKFPESYGNAYKRLIMMEKKL
FT                 EKDPQLKEWALKTFKEYQTKGYLRKLTSEEVKKTTERTYYLPHFVVVNKNK
FT                 AKPRLVFDAAAKIADKSFNSELLSGPDINEPIHGVALRFRENRIAVSGDIQ
FT                 EMFHQTRITAADQDSQQILWRDCNTDKPAEVYVLQVMSFGATCSPFCAQYV
FT                 KNKNAENFAEMYPEAAVAVKKQHFVDDYLDSFSNSEDAKKITNQVIEIHQH
FT                 AGYYIRNFLSNDKELMKAIPQDRRHKLFTKPMEDKDSHAEKVLGIYWNTEN
FT                 DCLSYLIKWNIYGEKLLQNMLPTKREVLAYIMSIYDPMGLISNLSIHGKIL
FT                 MQELHKATLNWDDEIPNHLHDHWNTWVTTIKEAENLEIPRCLTNGTVDEVE
FT                 LHTFVDASDKAFAAAVYCKSTNSNGTYITLVAGKARVAPIKGLSIPRLELQ
FT                 AAILGTRLTNQIRKDLRLKVSKITYWSDSQTVLSWIKR"
FT   CDS           3516..6026
FT                 /product="BEL-156_AA-I_2p"
FT                 /translation="MDKKIDIKFQPFVAHRIGEILDSTAMDQWRWVPSEHN
FT                 PADAATKLNGNKNIWLNGPEFLKTEEVNWPNKSKEQIHVFVIETNKKTGND
FT                 YDEFRLVQENKYDKWWRLVNSVCIIKKFVEWKEDRNNFTKDVTLDTRNAAE
FT                 NIIYKKAQWQGFPEEMEDLHLKGSVSIKSHIRCLKPYLDEFGVMRSNGRLE
FT                 KATNLSKNLKFPVILPQKNVITKMIVRSTHQRYLHQGENAIIAALQQKYWI
FT                 INIRAVVRNEKKCCQKCIIDSAKPEAPMMAALPDFRIKPYVHPFTHCGVDY
FT                 FGPFEVVVKRSTEKRWGVIFTCMSSRAVHIEMAEKLDTDSFIVCLRTFQNR
FT                 RGKITHIYSDNGTNFVGVNNIMAQLVSDINTRMGRSEAAKMEIKWTFNPPA
FT                 APHFGGVWERLIRIIKSALQVLLKSWGERTPRCETLRAAFVQAEFFLNARP
FT                 LTHIPVDNIDDEVLTPFHALIGCSGEYVPPYFTEVNNFQEQCKQVQHAGQQ
FT                 FWNRWKNEYIPTLAKRNKWTNKIEPIKVDDIVIITDDEATPNTWLKGRVIK
FT                 VHTASDGQVRSVEIKTKNGVKKRPSVKVAALDVSGSREKEMDKKFQQSINR
FT                 KRETILHFSDNSSSKSTLDRSFPNWGKRRTIDEEEAKAIRDKTPQNKRVKI
FT                 NSSNSLGKIMLATTTLLSIANAINIKPIEEDGLIFDHEGTCLLKRGSWKTN
FT                 IYTGISPAQDINFIDHVHQNLTIALKEMERQTKDQTIHQLATSIGHQCDDA
FT                 IQEIQQITRKRRSKGIFGFLKDIFFGGDDIDEAVEAMRIQEDNKIHHVSET
FT                 VQKQSELMRKPDCVAASLQHMKNRNYQANIPNSSN"
XX
SQ   Sequence 6614 BP; 2463 A; 1237 C; 1321 G; 1593 T; 0 other;
     tttggtggct ccagagagga aggtataaga gttagccatt ttttaacgaa taagattcgc        60
     atacggattt actcgtattt acgtatcaaa atgtcgaagc tggtaaagaa cccaaacggg       120
     cactgtaagt tgtgcaccaa caaggacagt atggacaaca tggtggaatg tgacgattgt       180
     gatcgctggt atcacctctc ctgcgccaaa ctggatcgat cacctacggc agaggaatcc       240
     tggatatgcg agcactgtgc cgatatccaa aggaaatggt ataagcaagg cgctgctgcc       300
     atcgagaaga aaattgccac tcaaaaacaa accgagaaca agagccccaa ttccaacgag       360
     caaatcctac aagaattgac caatgcaatc accagtgcat tcaaacaggt caaagtagaa       420
     ccagaagaac gcactccagt caaccaggcc aatgattgga ccatttattt gaaaagacag       480
     gctttgataa gcctgcctaa gtttaatggt tcatcaaagg aatggcctaa gttcgaaaaa       540
     atctttaatg ataccaccca ggaaggaaat ttcagcccat tggaaaattt aaatagactc       600
     caacagtcgc ttgaaggaat tgcagcaaga tgcgtaagcc aattaatgat ggatgctggg       660
     aatatcccac aaataatgga gcgattaaag ctgaattttg gacgtccgga aataatctac       720
     aacgaacttg tgacagagtt gtccaagatt cgaaaggaga accgaatggc tgtggtggat       780
     atttcagagg cactcggtaa tctggttagc aacctggagc taatcaattt tcaagattac       840
     ctacgagacc ccagactcgt caatgaaacg gttcaaaagt taccgtataa tctccaagta       900
     aagtgggccg aagaaaggca agcaaatggc ccagtcgcaa cattaaagga gttatacaca       960
     ttcctaactc cacatgcaaa gataagtcgc ataatgcaga atgccgcaac tccagcccca      1020
     cgaaagacga ttaatataca tcatgatata cgtcaacaag accgtcaaca tgataatcac      1080
     tcaagaggtc cacaatgtgg aaattgctca ggtcatagga ttactgactg ccaattattc      1140
     agagacatgg atactaaaaa gcgcaatgaa gttgtgagaa caaataagct gtgcatagga      1200
     tgtctcagcc catttcactt cttcaagaat tgtaatcgtt cacgcaggtg tggtttaaat      1260
     ggttgcaata aaaatcatca ttcgtggctc cacgataaac aagagaccag gaagccacct      1320
     actgtgccac ccaccgagaa aaaggataat gatcaaaagc cactaacgac gactactcaa      1380
     aatgatgaaa aattagttgg tcatcatcga attaaacgca gcaaaattct ttaccaaata      1440
     attcctgtga ccctaaagaa tggatcaaaa tctgtggata cgtatgcttt tctcgacgca      1500
     ggatcgtctg ccacattagt cgatagaagc atcgtcgata ctttggaatt ggaaggaaga      1560
     aatgatcctc tacatctcac gtggactcaa gatataagta aagatgagga taatagtatg      1620
     aacgtggaac ttcaaataag tggatcatca aaaaagttgt atactatcaa gaacgtaaga      1680
     acgacgaaga acttgcagtt gccaagacaa acagttgatt tcgaaaaatt gaagcaaaaa      1740
     ttttcttatt ttaaagattt gccaatcaca agttttacaa acgagcgtcc aatgattctt      1800
     attgggattg aacacagtca tctgttgatt cctttagaaa gacgaatgag gaaatggaac      1860
     gaaccgattg ctgtcaagtc taaattagga tggttcttgt ttggcaatat atctgcatcc      1920
     gttcagcacg agtatgcaat gatacaccac gaagaagaaa tgacaaaact aatgaaatca      1980
     tatttttcaa ccgaagattt tggagttaag atatctgaga attctctaaa atccgaagag      2040
     gaaaaacgag ttgtcaacat catggaaaaa accgttaaat acactgatgg cagatacgag      2100
     gttggtttgc tgtggaaaga tgacgatata aaattcccag aaagctacgg caacgcgtac      2160
     aagcgtttga taatgatgga gaaaaaactg gagaaggatc ctcagcttaa agagtgggcg      2220
     ttgaaaacat tcaaagaata tcaaacgaag ggatatctac gaaaactaac atctgaagag      2280
     gtaaaaaaga caacagaacg tacttactat ctaccgcact tcgtagttgt caacaaaaat      2340
     aaggcgaaac cacgattagt tttcgatgca gcagcaaaaa tcgctgacaa atctttcaat      2400
     tcagagctac tgtcaggacc tgatatcaat gagccgatac acggagtagc attgcgtttt      2460
     cgagaaaaca ggatagcagt tagcggtgat atacaggaga tgtttcacca aacaaggata      2520
     accgcagcgg atcaagattc tcaacaaatt ttatggagag actgcaacac tgataaacct      2580
     gcggaagtgt atgtgctgca agtaatgtca tttggagcaa cgtgttctcc attctgcgct      2640
     caatatgtga agaacaaaaa tgctgaaaat ttcgcggaaa tgtatccaga agctgctgtt      2700
     gctgtgaaaa aacaacactt tgtagatgac tatttagaca gtttctcaaa ctcggaagac      2760
     gccaagaaga ttactaatca agtaatcgaa atccatcaac atgcaggcta ttatattcgg      2820
     aatttcttat cgaatgacaa ggagctaatg aaggccatac ctcaagatag acgccataaa      2880
     ctatttacta aaccaatgga ggataaagac tcacatgctg agaaggttct tggtatctat      2940
     tggaacacag aaaatgactg cctgtcgtac ctgataaagt ggaatatcta tggagaaaaa      3000
     ctacttcaga atatgttacc aaccaagaga gaggtgttag catacataat gagcatctac      3060
     gacccgatgg gactaatttc taacctatca attcacggaa aaatattaat gcaggagtta      3120
     cataaagcca ctttgaattg ggatgatgag attccaaacc acctgcatga tcactggaac      3180
     acgtgggtca caacgattaa agaagctgaa aacttagaaa ttccaaggtg cttaacaaat      3240
     ggaactgttg acgaggtgga actgcatacc tttgtagacg catccgataa agcatttgca      3300
     gcagcagtct attgcaaaag cacaaattcc aacggaacat acataacact tgtagccgga      3360
     aaagccagag tcgctccaat caaaggatta tctataccac gacttgaact tcaagcagct      3420
     atcctaggaa cgaggctaac gaatcaaata cgaaaagact tacgtctcaa ggtatcaaag      3480
     ataacttact ggtcagactc acaaactgtc ttgtcatgga taaaaagata gatataaagt      3540
     tccaaccatt cgttgcacac agaataggcg agattctgga ctccacagcg atggatcaat      3600
     ggaggtgggt accatcagag cacaatccag ctgatgctgc aacaaagtta aatggaaaca      3660
     agaacatatg gttaaatggc ccagaattcc taaaaactga agaagttaac tggccaaata      3720
     aatctaaaga acagatacat gtttttgtga tagaaaccaa taaaaaaacg ggcaacgatt      3780
     atgacgaatt tcgattggtc caagaaaata aatatgataa gtggtggaga ctggttaaca      3840
     gtgtctgtat tatcaagaag ttcgtcgaat ggaaagagga cagaaacaat ttcacgaaag      3900
     atgttacttt agacaccaga aacgcagctg aaaacataat atataagaaa gcccaatggc      3960
     aaggattccc ggaagaaatg gaagatttac atctcaaagg ctctgtcagt ataaaaagtc      4020
     atattagatg tcttaagccg tatttggatg aatttggtgt tatgcgatct aatggaagac      4080
     tggaaaaagc gacgaatttg tcaaaaaatc tcaagtttcc agtgattctg ccccagaaaa      4140
     acgtcatcac caaaatgata gtaagatcaa cacatcaacg ttacctacat caaggagaaa      4200
     atgccataat tgctgctcta caacaaaaat attggataat aaacatacga gcagtagtga      4260
     gaaacgagaa aaaatgctgc caaaaatgta taatcgactc tgcaaaaccc gaagcaccaa      4320
     tgatggctgc tttgcctgat ttcagaatta aaccgtacgt tcacccattc acacattgtg      4380
     gagttgatta cttcggtcca ttcgaggtag tagttaagag atcaaccgaa aagcggtggg      4440
     gagtaatatt cacttgcatg tcatcaagag ctgtacatat cgaaatggcg gaaaaattgg      4500
     atacagattc attcattgtt tgccttagaa ctttccaaaa tcgacgtgga aagattactc      4560
     acatatacag tgataatgga acaaactttg ttggagtaaa caatataatg gctcaattgg      4620
     tgtccgacat aaacacaaga atgggcagaa gtgaagcagc aaaaatggaa ataaaatgga      4680
     catttaatcc cccggctgca ccacatttcg gaggagtatg ggaaagactg attaggatca      4740
     tcaaatcagc tctacaagtt ttattaaaat cttggggtga aagaacaccc aggtgcgaaa      4800
     cattaagagc agcgtttgta caagccgaat tcttccttaa cgcaagacct ttaacacaca      4860
     tccctgtgga taacattgat gatgaggtat taactccgtt ccacgcatta ataggttgtt      4920
     caggagaata tgttccacca tattttactg aagtcaacaa ttttcaagaa cagtgtaaac      4980
     aagttcaaca tgctggacaa cagttttgga atcgctggaa gaatgaatac attccaacac      5040
     tcgcaaaaag gaacaaatgg acaaacaaaa tagagccaat taaggtcgat gacatcgtga      5100
     ttataactga cgatgaagca actccaaata catggttgaa aggacgagtc attaaagttc      5160
     acactgcatc agatggtcaa gttcgatcag tcgaaatcaa aacaaagaat ggagttaaga      5220
     aaaggccatc ggtaaaggta gcagccttag atgtatccgg ttcaagggag aaagaaatgg      5280
     ataagaaatt tcaacaatcc atcaatagaa aaagggaaac gattctacat ttctcagaca      5340
     actcttccag caaatcaact ttagatagat cattcccaaa ctggggaaaa cgcagaacta      5400
     tcgatgaaga ggaagctaaa gctatacgag ataaaacacc tcaaaacaaa cgagttaaaa      5460
     tcaattcatc caactcgtta ggaaaaatca tgctagccac aacaacattg ctatcgattg      5520
     ctaatgctat caacatcaag ccaatagagg aagatggtct tatttttgat catgaaggaa      5580
     cgtgtcttct gaaaagaggc tcctggaaaa caaacatata caccggtata tctccagcac      5640
     aggacatcaa ttttattgac cacgtccatc agaatttaac aatcgcgtta aaagagatgg      5700
     aaaggcagac gaaggatcaa acaattcatc agctggcgac atcaattggg catcaatgcg      5760
     atgatgcaat ccaagaaatt caacaaatca cccgtaaacg cagaagcaag ggaatattcg      5820
     gattccttaa agacatattc ttcggaggag acgacatcga cgaagcagta gaagcgatga      5880
     ggattcagga agataacaaa attcatcatg tttcggaaac tgtacaaaag caatctgaat      5940
     taatgcgaaa acctgattgt gtagccgcat cattacagca catgaagaac agaaattatc      6000
     aagcaaatat tccaaactca tcaaactagc aaaggttaat actgtattat attatacaaa      6060
     taatcccaag gagatggtaa tacattgtga caaaacagtt atatctccac catatgaagc      6120
     tgctatagta actatggatc cagattgtaa gattaaatca aattcaagaa caatttatgc      6180
     ttatttgaga aacgaatcca ggaaaacgct taccttcttc caacctagag ctacaatcaa      6240
     tttgaataaa aatattaaaa cattgcaaga cattaagaaa gagaaaaaga aactagatac      6300
     tggttacgaa tacatcgata atatagaaga accaattaat gatagttcaa catttcacta      6360
     ctacaatcct tactcttgga tagcagttat aataatattg attgccatta ttatattatg      6420
     tatcttcata tatttcaagt acattagatg taatgatcca gtagttcaac cgagctttca      6480
     aatgaatgaa atttcaagta tacctgtaaa tcgaagaagt aaaatatcag atagacaaac      6540
     tattcaagaa gagcagattt aaataatata caattaattt gtaaatcaat ggaatcgatt      6600
     tatgagggtg ggaa                                                        6614
//
ID   BEL-156_AA-LTR repbase;    DNA;    INV; 592 BP.
XX
AC   AAGE02017627;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-156_AA_;
KW   BEL-156_AA-I; BEL-156_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-592
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017627; Positions     611      20.
XX
SQ   Sequence 592 BP; 195 A; 122 C; 107 G; 168 T; 0 other;
     tgttgcagac gctgcaataa acgattttag aaataacaga catataggaa aatccattgc        60
     aacagaaaaa ccctttgttc agaaaaacgt agcgattgta aaatcattag atgaaaagaa       120
     tttctacccc ttaatgagcg tggccaaaat ccccgagcaa taaaatcatc cctcaaatca       180
     ggtaacgcac gcatctcggt tttaaacaaa agagcaatta tctattccat gcgcaagggt       240
     agaataataa aacatagaca gtagccgaga agggcgccgc gaccaaaagg gccaaccgtt       300
     ttttgtgctc aggtaatcgt aggtaaattt agtcgtaagt aatttcttgt atatatatct       360
     catacatttt tgaaaatata tgtcattcat agtttagcga tcacacgccg tagtttttat       420
     tcgttgtctt tctcgacaat accttggtcg aactcacatc cgaacgcttt gttttcagta       480
     ctgttttaga attttggaat agcttctcga atgagtggaa ggactagcca aagatcaagc       540
     tttacttgaa atcattgcca tattctcaga ccctttaacc ccggagccca ca               592
//
ID   BEL-157_AA-I repbase;    DNA;    INV; 6378 BP.
XX
AC   AAGE02018937;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-157_AA_;
KW   BEL-157_AA-LTR; BEL-157_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6378
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018937; Positions   24700   18323.
XX
CC   Positions [5425-6009] - Integrase core
CC   'GTATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1151..2911
FT                 /product="BEL-157_AA-I_2p"
FT                 /translation="MERKLENLCDRLELIMEKMLRIKEALNQDAANNVHFL
FT                 NLQLQTIQKSYEEYDSVYNEAVSLVAKDKKGEWKNDYLNFETLHAELYVTA
FT                 QTRIADLQRGESNRALTLNANASEFSPRPQVVHSVPHLQVPLPTFDGKLEN
FT                 WHSFKCMFQTVMGRYPNESPAIKLYHLKNSLIGNAAGKIDQEVINNNDYES
FT                 AWRLLEDAYEDERLIIDTHIDALLDLPKLTRENGDEMRKLVETCTKHVDAL
FT                 KNQDLPVEGLSEMILINVISKRLDRESRKLWESSLNRGDLPSFDDLIDFLK
FT                 ERSRVLQKLTSYAHINQPQTTAKSGQLASTTKAKQTKMFVQTNKEACPCCS
FT                 NPHIIYKCADFKKLSVAERFDKVKRMGLCFNCLRPGHRTVDCSSDQHCKAC
FT                 AKHHHSLLHNERSEDPKKKVKATQPKNQVEAEKKEELSPAAEQRTVSCCTQ
FT                 TRAAPKQIFLSTAKIVVFGSGNTTTTCRALLDCCSESNIITERLAKKLNMQ
FT                 LLVINPLISICGLNGMETTANKVVQTKVSSRDGEFSAILDFIVTPSITELP
FT                 TGKVETQSWPLPAGIELADPAFNVPDDVDVIIGAERTTMF"
FT   CDS           3112..6378
FT                 /product="BEL-157_AA-I_1p"
FT                 /translation="MTATERAVEQHFAETHTRNINSRYVVRLPFNDLKSQL
FT                 GDSYENAKRRFGRLMVSLAKNPSKQEAYKQFMKEYETLGHMQEVSDNPEHG
FT                 YFIPHHAVYKDSSSTTKVRVVFDASAASSTGVSLNDTQLIGPTVQSDLVTI
FT                 MLRFCTHQVVLTADVPKMYRQVQIHPDDRVYQRIVWLNDSNEMTTFELKTV
FT                 TYGCSSAPYLATKALTQLATDEADAFPLAARVVKEDSYVDDFITGGKSAAD
FT                 VKETYSQLTNMLSRGGFGVHKFCSNSAEVLQLIPPELQEKQVDFEMSEINN
FT                 TIKTLGLIWNPSYDYFVFNVPLPAYNEARPTKRIVLSEISKLFDPLGFLGP
FT                 VVTTAKLIMQELWRLKLDWNDELPDDQMQLWLAFREQLVAVRQVRKKRCVI
FT                 PGNTVKIELLGYCDASKRAYGAVLYVRSELNDGTINIQLVCSKSRVAPLKP
FT                 TTIPRLELCGALVLAQLVQKTIESLKVKFDSVTLYSDSMICLSWLKKSPAL
FT                 LNEFVCNRVATIVELTQNYKWDYVKSENNPADVLSRGLYPEQLIEEELWWR
FT                 AAPEQWQHGEIEDEAVPVLADDELPELRSSKCVLATTVTKSCNNWIRVSNF
FT                 NRLQRAWAYVWRFVEITRTKKRNPVSNPITASELSRAAQTIFKIVQQEAFK
FT                 EEFKYLQSTDKKRNDLSSLAPFVDDKGLLRVGGRLKYSNIPYEGKHQLLLP
FT                 ERHPVVELLVRYFHEKNLHVGQNALISIIRQQYWPIKVKTTVKRITSRCFR
FT                 CYKHKPQQLNQFMGQLPSYRVTPAPVFASTGVDFAGPFILRESGKKPKFVK
FT                 AYAAVFVCMAVKAVHLELCTDLRSETFLAALQRFTSRRGIPSDLFSDNATT
FT                 FTGAANELAELRELFRSQLHKDKLAEFCTTKGITWHFIPPRSPHFGGIWEA
FT                 GVKAMKHMLKRVVGETRLTYEEMTTFLSEAEAIMNSRPMCPLSDDPNDFQA
FT                 LTPFHFLIGRSGQAIPEPSYDQEKIGRLSRWQHVQYMRDHFWKRWSADYLH
FT                 TLQTRQKWKDGVLDIKVGALVLLREENVPPQQWKLGRITATHPGEDKVVRV
FT                 VTVRTASSEYKRAVTRICLFPDVESIDPTGGV"
XX
SQ   Sequence 6378 BP; 1851 A; 1377 C; 1655 G; 1495 T; 0 other;
     tttttggtcc tatcgtgacc cggatatgga cagtttttgc ggttcccgga tggtttgatc        60
     ggtttcgttt gtgatcgcga tcgcgagtgc aagaaagtgg tgaatttgca ccaagtgcaa       120
     aaaattgcgc cgccattgtt gtaaaatcga tgcggcggtg tgcaagcaga aacgtgttcg       180
     aaggagcgcg atgcttctag aagcacgata aacagtgaaa aagtgaaatg atccgcatgg       240
     tttgcggatg atcgccaggc ggtcattgag tgtacggttc ccggtttggc gttccgcccc       300
     ggtcggaact tacgtttcgg cacgtttgcc gaagtgaggt tatgaaagtg ttacacacat       360
     agggtgtgct agtgaaatgc ttctgaaaga agcattggtg tgagtgtggt ttcccaccag       420
     agtggtgaga ccacgtacat caacagcagc actaagctga caagaacaag tgtactgtgg       480
     actgattgct gtgtgcatag ggcatgctag caaaagaaaa cgaagcgcaa ggcttcagaa       540
     gaaaagtttt tagttgtgta tgtgggcact gtaccccagt ggtatggtga agaatggtgg       600
     tttcacgcat aggacgtgct gacagtaatg ttcgaagcac aaagcttctg gtgaaagtgt       660
     agttgtgtgc gccggagctg tctgcgtgtt gtggccgtac agaagcgtag gtgtgttgaa       720
     ttgctgcaca catagggtgt tgccagcaac agcaaagaaa gcacgaagct tcaggaaaag       780
     tgtggttatg tgcaaacttg aattgctaaa gtaatagtgc gaagattaca aaagaacaaa       840
     cgacagccag tgtactcgaa aaaagaaaaa aaaacgaatg ataaatgagt gaacaaaaaa       900
     agaattcaaa tgaagattat cgcgtaactc caagagtaac aagaagtgtt gtggcaagaa       960
     gaaacctatt ggcagcttta acgggatcga gcgctcgtga ggacgctgct aatactgtgg      1020
     aagaagaaaa tcagtgtaat ttggtggact caagtgttcg tacacagggc ttaaatccct      1080
     tgcaaaggcc actagagctc agtgttgcat atcaaaaaga gctagatcga gtgaaaaaga      1140
     gcaacgagaa atggagcgca aattggagaa tttgtgcgat cgtttggagc tcatcatgga      1200
     gaaaatgctt cgcatcaaag aggcattgaa ccaagacgct gcgaataatg tacacttctt      1260
     aaatctgcag ctgcaaacaa ttcagaagtc gtatgaagag tacgactcag tgtacaacga      1320
     agcggtaagt ctcgtcgcca aggataaaaa aggtgagtgg aaaaatgatt acctcaattt      1380
     tgaaaccctt cacgccgagc tgtacgtaac ggcgcagaca aggattgcag acctgcaacg      1440
     gggtgaatca aatcgagctt tgacgctaaa cgctaatgcg tcagagtttt ctccacgacc      1500
     tcaggtggta cacagtgtcc ctcacctcca agtgccgcta ccgacatttg acggaaaatt      1560
     ggagaactgg cactccttca aatgtatgtt tcaaaccgta atgggtcggt atccaaatga      1620
     gtcgccagcg atcaaattat accaccttaa aaattcccta atcggcaacg ctgcaggtaa      1680
     gattgatcaa gaggtgataa acaataatga ctacgagtca gcatggcgtt tactggagga      1740
     tgcttatgaa gatgaacgat tgattatcga tactcatatc gatgcgttgc ttgatctgcc      1800
     gaagttgacc agggaaaacg gcgacgagat gcgtaagctt gttgaaacgt gtacaaaaca      1860
     tgttgatgcg ctaaagaatc aagatcttcc agtagagggc ctgtcggaaa tgattcttat      1920
     caacgttatc agtaagcgac tggacagaga gagcaggaag ctgtgggagt catcattgaa      1980
     tcgcggtgat ttgccttcat ttgacgattt gattgacttt ctcaaagagc gtagccgtgt      2040
     tctccagaag ttgacgagtt acgcccatat taatcaaccg caaacgacgg caaaatctgg      2100
     tcaactggct tccacgacga aagccaagca aacgaagatg tttgttcaaa cgaataaaga      2160
     agcatgtcct tgttgctcca acccccacat catctacaag tgcgcagatt tcaagaagct      2220
     ttctgtagca gagcgtttcg ataaggtcaa gcgtatgggc ctgtgcttca actgcctgcg      2280
     tccagggcat cgcacagtgg actgctcatc ggatcagcat tgcaaggcct gcgctaagca      2340
     tcaccacagc ctcctccaca acgagcgctc agaagatccc aagaagaaag ttaaggctac      2400
     tcagccgaag aatcaagtgg aagcagagaa gaaggaagag ttatcgcctg cagcagagca      2460
     gcgcacagtc agctgctgta cacaaacgcg agcagctccg aagcagattt ttctgtctac      2520
     agcaaagatc gtagtgtttg gttccggtaa tacaacaaca acctgtagag cgttactgga      2580
     ttgctgctcc gagtccaaca tcatcacgga aagattggcc aagaagttga acatgcagct      2640
     tttggtgatc aacccgctga tttctatctg cggtctaaat ggaatggaga caacagccaa      2700
     caaggtcgtt caaacgaagg tgtcatctcg agatggtgaa ttttctgcaa ttctggactt      2760
     catagttacg ccgtccatca ccgagttgcc aacaggtaag gtagaaactc aaagctggcc      2820
     actccctgct ggcatagagc tggcagaccc ggcattcaac gtgccggacg atgtagatgt      2880
     gattatcggt gctgagcgta ctacgatgtt ctgaagaaag ggcgtctcaa gattggagcc      2940
     gacttcccga ttctcgctga aacagtattc gggtgggtcg taagtggtcc tgcaaaatct      3000
     cagcaacagg ctagccagaa acgaatatgt cagctgaaca ccacccacga agatgtcaat      3060
     cgcaccctct ccaagttctg ggaattggag acgggatgct tcgtcagtaa gatgactgca      3120
     acagagcgtg ctgtagagca gcactttgca gagacacaca cacgcaacat caatagtagg      3180
     tacgtggtca gactgccgtt caacgatctg aagagtcaac tgggcgactc atacgagaac      3240
     gcaaaacgtc gatttggaag gctgatggtc agtcttgcca aaaatccaag caaacaagag      3300
     gcctataagc aattcatgaa ggaatatgag accctcggcc atatgcagga ggtaagcgac      3360
     aacccggaac atggatactt cataccgcat cacgcggtct ataaggactc gagctcgact      3420
     acgaaagtgc gagtagtgtt cgatgcttct gcggcgtctt ctacaggagt atccctcaac      3480
     gacactcagc taatagggcc cacagttcag agtgatttag tcactatcat gctacgattc      3540
     tgtacgcacc aggttgtttt gacagcggat gtacctaaga tgtacaggca ggtacaaata      3600
     caccctgatg atagagtgta ccagcgaatt gtgtggttaa acgactcgaa cgaaatgact      3660
     accttcgaat taaaaacagt cacatacggc tgttcaagcg ctccctacct ggcaactaag      3720
     gcattgacac aactggctac ggacgaagct gacgcctttc cattggcagc tcgtgttgtc      3780
     aaggaggata gttacgtaga cgatttcatc actggtggca aatcagctgc agatgttaag      3840
     gagacctact cgcagttgac caacatgttg agccgcggtg gatttggcgt gcataaattt      3900
     tgctcaaaca gcgcagaagt tctacagtta atcccaccag agttgcagga aaagcaggta      3960
     gacttcgaga tgtccgagat caataacacc atcaagacat taggactgat ttggaatcca      4020
     agctatgact acttcgtgtt caacgtgcca ctcccggcgt acaatgaagc tagaccaacg      4080
     aaaaggattg tgctttcgga aatcagcaag ctttttgatc cgttgggatt cctgggaccg      4140
     gtggtgacaa ctgcgaagct gataatgcaa gagttgtggc gtttgaagct agattggaac      4200
     gatgagttgc cagatgatca gatgcagctg tggctagctt tccgtgaaca gttggttgca      4260
     gtacgacaag taaggaagaa aaggtgtgtc attcccggaa atactgtgaa gatcgagtta      4320
     cttggatatt gcgatgcctc gaaacgtgca tatggtgcgg ttttgtacgt tcgaagcgaa      4380
     ctcaacgatg gcactatcaa catacaacta gtgtgtagca aatctcgagt tgcacctcta      4440
     aagccgacca ctatacctag acttgaattg tgtggcgcac tagtgttggc acagttggtg      4500
     cagaagacga ttgaatcctt gaaggtgaag ttcgacagtg taacgctata ttccgattca      4560
     atgatttgtt tgagttggct aaaaaagtca ccagcgctgt tgaatgagtt tgtgtgcaat      4620
     cgagtggcta ccatcgtcga actaactcag aactacaaat gggactacgt taaatccgag      4680
     aacaatcctg cggatgtgct gtctcgggga ttgtatccag agcagttgat cgaagaagaa      4740
     ctttggtgga gagccgcacc cgagcaatgg cagcatggag aaatagaaga tgaagccgtt      4800
     cctgtattgg cagatgatga gctaccggag ctgcgaagtt cgaaatgtgt gcttgcaaca      4860
     accgtgacaa aatcgtgtaa caactggatt cgagtcagca acttcaaccg attgcaacgt      4920
     gcctgggcat atgtttggag atttgttgaa ataacccgta cgaagaagag aaaccctgtc      4980
     agcaatccca tcacagctag cgaattgtcc agggctgctc aaactatctt caagatcgtt      5040
     caacaggaag catttaagga ggaatttaag tacttgcagt ccacagacaa aaagcggaac      5100
     gacctttcaa gcctggcacc cttcgttgac gacaaaggcc tccttcgagt tggtggacga      5160
     ctgaagtatt caaatattcc atacgagggc aaacaccagt tgctgcttcc ggaacgacat      5220
     ccggtagtcg agctgctggt ccgctatttt catgagaaga accttcacgt tggacagaac      5280
     gcattgattt cgatcattcg gcagcaatac tggccgatca aggtgaagac aactgtcaag      5340
     cgaatcacca gccgatgttt tagatgttac aagcacaagc cccagcagtt gaaccaattc      5400
     atgggtcagc taccaagtta ccgcgttaca cctgcgccag tctttgcttc gaccggtgta      5460
     gattttgctg gaccattcat tctcagggag agcggaaaga aaccgaaatt cgtaaaagcg      5520
     tacgcagctg tattcgtgtg tatggctgta aaggcagtac atttagagct atgcacagat      5580
     ttgcggtcag agacgttctt ggcagcgtta caaaggttta ccagtcggcg tggcatccca      5640
     tctgaccttt tctcggataa tgctactacg tttaccgggg ctgctaatga gctagctgaa      5700
     ctacgtgagc ttttccggag tcaactgcac aaagacaagt tagccgagtt ctgtaccaca      5760
     aagggcatca cttggcattt cattccgcca cgaagtcccc acttcggcgg tatttgggag      5820
     gccggagtca aggcaatgaa gcacatgctg aagagagttg ttggagagac gagattgacg      5880
     tatgaagaga tgacgacgtt tctgtccgaa gcggaagcaa tcatgaattc gcgtccaatg      5940
     tgccccttat cagacgaccc caatgatttc caggctttaa ctccatttca tttcctaatc      6000
     gggcgtagtg gtcaagcgat tccggagcct tcgtatgacc aggagaagat tggtaggttg      6060
     tcaagatggc agcatgtgca gtacatgaga gatcattttt ggaagaggtg gtccgcggac      6120
     tatcttcata cgctgcaaac acgccaaaaa tggaaagacg gtgtattgga catcaaagta      6180
     ggagcattag tgttactgcg agaagaaaac gttccacccc agcagtggaa gttgggccgc      6240
     atcactgcta cacatccagg cgaggataag gtggtgagag tggtcaccgt cagaacagcg      6300
     agcagcgagt ataaacgggc agtgactaga atctgtctgt ttccagatgt tgaatctatc      6360
     gacccaacgg ggggtgta                                                    6378
//
ID   BEL-157_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   AAGE02018937;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-157_AA_;
KW   BEL-157_AA-I; BEL-157_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018937; Positions   18322   18116.
XX
SQ   Sequence 207 BP; 70 A; 45 C; 36 G; 56 T; 0 other;
     tgattgcgta gaaataaaaa tacagtccat ttggtttcag tgtagagaaa tacattaaca        60
     gaatttgcgt tacctttcat atcaagaaac cttgtcagat gaatcagtag taaaataaat       120
     cttgtaccga gcagacgcgt ccgactttag ttctttccga ccatcaagta tcgcaagtcc       180
     gaaccacgtg aaaattcccc ccgaaca                                           207
//
ID   BEL-158_AA-I repbase;    DNA;    INV; 2323 BP.
XX
AC   supercont1.323;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-158_AA_;
KW   BEL-158_AA-LTR; BEL-158_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2323
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.323; Positions  433387  431065.
XX
CC   'ATAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1986
FT                 /product="BEL-158_AA-I_1p"
FT                 /translation="MKHLWQATSATVADQSLISVGIQQRTHSAFPKVILKE
FT                 QNLIVNTNERSDMEPDEHQFQSSASLTPLPSFSKERIVAVEVNPNTNTGLA
FT                 KGDANISHRSYRITNQRVQIVAMLINYHAPSMWLRERVDSSIMSTQKTSQP
FT                 MEGEMNEYHIANSESKCVRILLDPDTGQLTETIRVSIFTQWRTKFVNLTLY
FT                 CSTKLDGQGTRIYSAVNFETTISNKAKWKEIKPQIFKPCDVAQPLIVIPQS
FT                 IIDIALHVLHYNTDAGLQSQTKLFCNLMCLLTDIYQRFEFYQLSSLKSDSV
FT                 NIQHQRFPRRFAQKADRSRLSTRKRAYSRMRDHGERVSFHDHEWKSICQQR
FT                 LENRRENVRTDRKRSWTTMDKVHLEVNSTLSLVDISSKTIQQEELRNILCI
FT                 KLTCKNWSYPNCNTKMPMPNWTCGAMPRYRAVRPIRKRDTNVASLSNVAHA
FT                 VHARKPAMVRLASLSTIPMRSDEVVSWVPIVGVQTTLMISEAISCQTLSSK
FT                 WTWLNVTVLRILWVTLANKSGDEINCKMKPDSMDSNHGLDLTNSRQFSVIL
FT                 V"
XX
SQ   Sequence 2323 BP; 745 A; 487 C; 524 G; 567 T; 0 other;
     aactttaaaa ctttcgtggt tatggactgt acaccgacat cagcgggagg ctgcgtcatc        60
     caatcgcgcc ccgaatcaca tcgtcttcct atatcccgaa gcaaaacatc tcgtattgcc       120
     ctacgactgc agcaactgga tgaaatgcgc gcaattgagc tgcgccagat agaagctgag       180
     aaacgggcac ttgtattaga gcataatgcc atgcaagcaa aatacactct tctgctagaa       240
     caaagcaaga aaaaatctcc tcttcacaat agaggtgatg taaacaaacc ttcaactgac       300
     cctagttcag tacaaaccga aaaacgagag tgagtgaaac caatgaaaca tttgtggcag       360
     gcgacatcgg caacagtagc cgatcaatcc ctaatatctg tcgggattca gcagcggact       420
     cacagcgcgt ttcccaaagt cattctaaaa gagcagaacc taatcgtcaa caccaatgaa       480
     agatcggaca tggaaccgga tgaacatcaa ttccaatcct ctgcgtcact tacgccgtta       540
     ccaagcttct ccaaggagcg tattgtggca gtcgaagtaa atccgaatac gaatactgga       600
     ttggcaaaag gagatgccaa catttctcat cgatcgtatc gtatcaccaa ccagcgggta       660
     cagatagtcg caatgctgat caattatcat gcgccttcaa tgtggctacg tgagcgcgta       720
     gattcatcta taatgagtac gcagaagaca tcccagccta tggaaggaga aatgaacgag       780
     taccatatag caaatagcga gagcaaatgt gttcgtattc ttttagatcc ggacactggc       840
     cagctgactg agactatccg agtttccatt ttcacgcagt ggagaacgaa attcgtcaat       900
     ttaacgttat attgttcgac caaacttgac gggcaaggta cacgtattta ctcggcggta       960
     aatttcgaaa ctacaatcag taacaaagca aagtggaagg aaattaagcc tcaaatcttc      1020
     aaaccgtgtg atgtcgctca gcctctcatc gttattcctc agtcgattat cgacattgcg      1080
     ttgcacgttc tccactacaa cacagatgca ggacttcaat cgcaaacaaa gttgttttgc      1140
     aacttaatgt gcctgttgac ggatatctat cagcgtttcg aattctatca actatcgtca      1200
     ttgaagtcag atagtgtcaa tattcaacat caacgattcc ctaggagatt tgcacaaaaa      1260
     gcggatcgtt cacgattgtc caccagaaag cgagcgtatt cgcgaatgcg tgatcatggc      1320
     gaacgagtat cgtttcatga ccacgagtgg aagtccatct gccaacagag attggagaat      1380
     cgaagggaga atgtgcggac cgacaggaaa cgaagttgga ctacaatgga taaggttcac      1440
     ctcgaagtga acagcactct ttcattggtt gacatctcgt caaaaacaat tcaacaagag      1500
     gagctgcgaa atatactctg cattaaattg acctgcaaga actggagcta tccaaattgc      1560
     aacactaaaa tgccgatgcc caattggacg tgtggagcga tgcctcgcta tagggctgtg      1620
     agaccgatca ggaaaagaga caccaatgtg gcaagtttat caaatgtagc gcacgctgtt      1680
     catgcgcgta aaccagcgat ggtcaggttg gcgagtttgt caactatccc aatgcgttct      1740
     gacgaagttg tttcgtgggt acccatagtg ggtgtccaaa ctactttgat gataagcgaa      1800
     gcaataagtt gccaaacttt gagctcgaaa tggacttggc tcaatgtaac agttttgcgc      1860
     atactttggg tgacacttgc taataaatca ggagacgaaa ttaattgcaa aatgaagccc      1920
     gatagtatgg acagcaacca cggattggat ttgaccaatt cacgtcagtt ttcagtgata      1980
     ctggtctgaa agattattaa aaatttgaaa cgtggcgtct ccggtggttt aggaagtgtt      2040
     aacagagaaa atcgtaaaaa tcgttgtaac cactttaacc atggctctaa tgatatagga      2100
     acaggctagt taggaggatt tcaggtgtta agtcagaaat gaacattaaa ttagagacta      2160
     gtatcaaatt tgtaaacgaa ggtcgaaaag atggtcagcg aatgtgaaat ggatcacaat      2220
     tcagttcgaa taggaagaaa gtataacatt gcggtaactt tgaaaatatt taaaaagaaa      2280
     aatggtaaaa ctgatccgat ggtcagtctt acggggggga gta                        2323
//
ID   BEL-158_AA-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   supercont1.323;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-158_AA_;
KW   BEL-158_AA-I; BEL-158_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-456
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.323; Positions  431064  430609.
XX
SQ   Sequence 456 BP; 168 A; 84 C; 76 G; 128 T; 0 other;
     tgttgccgct gggtacactg cttacgctca cattatagct acaatcggac aatgacagta        60
     gctgacaata gtcagctgga tcgaagatat gcagacagtt cagataggag aaaacattgt       120
     tcttcctaca atagaataat tttatctaaa gtgaatttaa taacacaatt caattcatag       180
     ttcttcttaa atctaatcgg cgaaagtgag ttaaaattca tgcatcttaa atagtacaat       240
     taaaaactaa agtattcaca gatcattgtt gcgagaggag atatggtagg aatcataaca       300
     aggattcacc gaaagtgtaa gaaacactat aatatgaact atatatgtgc taataaaaat       360
     ctcattgcag tttaaagctg caccaaacag aaaaacaact tttcttcgtg ttgctcacaa       420
     cccggtaatc aaatcctacg tatttcgccg ccaaca                                 456
//
ID   BEL-159B_AA-I repbase;    DNA;    INV; 6297 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 24.01, Created)
DT   07-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-159B_;
KW   BEL-159B_AA-I; BEL-159B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6297
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6297
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 75-75 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..4382
FT                 /product="BEL-159B_AA-I_1p"
FT                 /translation="MNSARTCGKCRADGWVNHMVGCDMCDIWLHRDCADLT
FT                 SETLDPNKSWRCDRCLHDEATEVASNRTHRTTRTSSSIRAQRAELALKLLE
FT                 EEQELIKRNREKEDEFRRKEQEIQKKRAEEDAKLLKQKHELLQSLEEENGS
FT                 VRSVMSSKASRKKVESWLGTAPGSAEKPHASGDAAHSGIPIVTTGAATISN
FT                 QKTSFDALFNTNATKDVNRPRSTSTPQKHLSTPSVIPYATVPLSNLPIQVT
FT                 TSSSVSKWAGYYPGANVNTSSALPTILESQSNATNVTQTNVSFGSPGVTPS
FT                 APFASKLSDRQLPPIYTAGSHKPSSESMSFGQIVSVNSGSQFGRVSNVVTT
FT                 HSLSKSGMSCSGQWNRPWMTPAVTTTPVSVPSLGVCEQPEAGWRMTTSSNS
FT                 VFPATTGNSDSQRIDGSHCIVPPSGQQLDTSFQQAPSGVQIAARQVMPKEL
FT                 PSFSGDPQDWPLFSSSFYNSSTACGFTDAENLARLQRCLKGHALESVKSRL
FT                 LMPQSVPHVMETLRMLYGRPEILIHSLLQKLRSIPSPKNENLQSIITYGLA
FT                 VRNLVDHMHIANLEDHLRNPMLVHELVEKLPPQMRMQWSWYKRSISDVNLA
FT                 TFGEFMSEMVKTATDVTMPLDSTIQQTKPINMGREKQKLYVHAEADEGHSA
FT                 EATVNLQNSLREAEIVKRLCAYCSDETHEVARCHQFKALDLDGRWKAIRSK
FT                 GLCRTCLIPHRKWPCRSGKECGVDGCRFRHHALLHSRIATDSATGTCSNDN
FT                 VVRQNFHSVTKFSLFRYIPVTLEGNGKKVDTFAFLDDGSESTLLESGLAAE
FT                 LNINGSEEPLWLGWTGDISREEKGSQRISVAISGTGLKGQYRLDNVRTVQT
FT                 LKLQSQSFQYNELQKIYPHLRGLPLRSYSDAVPRMIIGIEHAQLLTSLKVR
FT                 EGGANDPVAAKTRLGWCVYGKQIDGNSTVTRLHVHSEEVGNRELHEQMKQY
FT                 FSIEEAAVATPLESEEDRRARGILEKTTRRIDGGFETGLLWKYDRPSFPNS
FT                 YPLAVRRMQSLEKKLSKEPALQERVNELIAEYEVKGYAHRITQAEVQSTNL
FT                 DRVWYLPLGIVRNPKKPEKIRLIWDAAARVNGVSFNDMLLTGPDMLTSLFA
FT                 VLLRFRQRAVAVCGDIQEMFHQVRIITQDKQSQRFIYREHPDQAPQVFIMD
FT                 VATFGAKCSPCSAQHVKNTNAKDFASLFPKAAEAIVNAHYVDDYLDSVDTI
FT                 DEAVQLVEEVKYVHAQGGFHIRNFSSNSPELLQRLGQTKPIEEKSMILDNV
FT                 MDTERVLGMMWKPAEDVFTFDINLKDDLAKLLLEGTAPTKRQVLRIVMSLF
FT                 DPCGFIAHFIIHGKILIQHIWRSGTDWDDSIADGLLGLWHHWTRLLQQLIE
FT                 VKVPRCFFGNTGSKLHDGIQLHVFVDASELAYACVAYLRIVKNKKVAAYSL
FT                 RQRRKLRLSSRSLSHVWSCKLD"
FT   CDS           4262..6295
FT                 /product="BEL-159B_AA-I_2p"
FT                 /translation="MCSISADCQEQEGGCVFVASKTKVAPLKPLSIPRLEL
FT                 QAGLIGCRLMDNICTALDLPLEGRYLWTDSRTCLSWIRSDSRRYHPYIGFR
FT                 VGEILNVSVVDEWHYVPSKQNVADDATKWGCGPSFSPSSRWYTGPNFLYLT
FT                 ENEWPEQPRKEMTTDEELRVVFHHHRKMPQTLIDVNRFSNWNRILRATAFV
FT                 IRSSKLFKKERHFGPLTSEELLQAENLLWRQVQNETFPDEYCILEFNKVNH
FT                 GMEQKRIEKGSPLYDQSPFMDDAGVIRMNSRIKAAPTVSFGMKYPIILPKD
FT                 HPLTTLLVDSYHRRFKHQNRETVLNEIRQQFRIPKLRSLIQRVAKNCQHCK
FT                 VRKTVPIPPMMAALPKVRLTPHIRPFCYTGVDYFGPLLVKQGRSLVKRWVA
FT                 LFTCLTTRAIHLEIVHSLSTQSCIMAIRRFGARRGFPTDFYSDNGTCFQGA
FT                 SNLLTKQIEAIHEGCAVTFTNARTTWHFNPPSAPHMGGSWERMVRSVKEAM
FT                 RAISEHPRHPSDEVLETVVLEAEAIVNSRPLTYVPLDNAEQEALTPNHFLL
FT                 YGSSGIVQPRSSLSDEGVVLRDSWKLVQHLADEFWRRWVREYLPTLTRRTK
FT                 WFETVKPLEPGDLVIVVDDNKRNGWLRGRITEVMRGKDGQVRSAMVRTADG
FT                 IMKRPAVKLAPLDVRDDQMQGTPELHGRG"
XX
SQ   Sequence 6297 BP; 1799 A; 1418 C; 1566 G; 1514 T; 0 other;
     aactttaaag attcagtcat tgaatctatc actgcgcagt aagcagtagg aagttctgcg        60
     aagtaagcag caacatgaat tccgctcgga cttgcggaaa atgtcgcgca gatggctggg       120
     tgaatcatat ggttggatgt gatatgtgcg acatctggct tcatcgggat tgtgcagatc       180
     ttacgagcga gacccttgat cccaacaaaa gctggcgttg tgatcgatgc ctacatgacg       240
     aggcgacgga agtggccagc aaccgcacgc accgtactac aagaacgtca agcagcatcc       300
     gagctcaacg ggctgagtta gctttaaagc ttcttgagga ggaacaagag ctgatcaaga       360
     ggaatcgtga aaaggaggac gagtttcgca gaaaggaaca agaaatacag aagaagagag       420
     cagaggaaga tgccaagctg ctgaaacaga aacatgaact tctgcagtcc ttggaggagg       480
     aaaacggaag cgttagaagc gttatgagca gtaaagcaag tcggaagaag gtcgagtcat       540
     ggcttggaac tgctcctggc tctgctgaga aaccgcatgc ctctggtgat gctgctcatt       600
     ctggaatccc aatcgtgaca acaggggctg ctacgatatc aaaccagaaa actagtttcg       660
     atgctttgtt caacacgaat gctacgaagg acgtcaacag gcccagatcg acgtcaacac       720
     cccaaaaaca cttaagtact ccttcagtta ttccttatgc aacagtccct ctatcgaact       780
     taccaattca agtgaccacc agttcatctg tttcaaagtg ggctgggtac tatcctgggg       840
     caaatgttaa cacatcgtcc gcacttccga cgattcttga atcccaatcg aatgcgacga       900
     atgtcactca aacaaatgta tcatttggaa gtccaggtgt tacaccatcg gctccatttg       960
     cttccaaatt aagcgatagg caattacctc cgatatatac tgctggttct cacaaaccat      1020
     cttccgaaag catgtctttc gggcaaatag tatctgtcaa ttccggatca caattcggac      1080
     gtgtgtcaaa cgtagttaca acgcattcgc tatctaagtc gggtatgtcg tgttcgggac      1140
     agtggaatcg accttggatg acgccagctg ttactaccac acctgtatcg gttccatcat      1200
     tgggtgtttg tgaacaacca gaagctggtt ggcgaatgac tactagttcg aattcagtgt      1260
     ttccagcaac aaccggaaat agtgattctc agcgaatcga tggttcacat tgtatagtgc      1320
     ctccttctgg acaacagctt gatacgtcct tccagcaagc accttcaggt gttcaaatag      1380
     cggcacgaca ggtaatgcca aaagagttgc cgtcattctc cggtgaccca caagactggc      1440
     cgttattttc cagttcgttt tacaactctt cgacagcctg tgggttcaca gacgcggaaa      1500
     atctagcccg tttacagcgt tgcttgaagg gacatgcgct agaatccgta aagagtcgtt      1560
     tactaatgcc ccagtcagta ccacacgtga tggagacttt acggatgtta tatggacgac      1620
     cagaaatcct aattcactct ctactgcaga agttgcgaag tattccttca cccaaaaatg      1680
     agaacttgca atcaatcatc acctacggtt tggcggtgcg taacctggtt gaccacatgc      1740
     atattgcaaa tctggaagac catttgcgca accctatgct ggtgcatgaa ctagtggaga      1800
     agcttccacc gcaaatgcga atgcagtggt cctggtacaa gcgttcaatt tcggatgtca      1860
     acctggcgac tttcggagaa tttatgtcgg agatggtgaa gacagcaaca gacgtaacga      1920
     tgccattgga ttcgacgata cagcagacta aacccattaa catgggacgt gaaaagcaaa      1980
     agttgtatgt tcacgcagaa gctgatgaag gtcattcagc ggaagcgaca gtgaacttac      2040
     agaattcttt gagagaagcg gaaatcgtga agagactttg tgcttactgt tccgatgaaa      2100
     ctcacgaagt tgctcgatgc catcaattca aggctttaga ccttgatggc agatggaagg      2160
     cgatcagatc aaaaggactt tgcagaactt gtttgattcc acatcggaag tggccgtgcc      2220
     gatctggtaa ggagtgtgga gtagacggtt gtcgattccg ccaccatgcg ttgttgcatt      2280
     cacgaatagc tactgattca gccactggta catgttctaa tgacaacgtc gtgcgacaaa      2340
     atttccattc tgtgacgaaa ttttctctat ttcgttatat cccagttacg ttggaaggaa      2400
     atggaaagaa agttgacacg tttgcgtttt tggacgatgg aagtgaatcc acattattgg      2460
     aatccggact tgcagcagag ttgaatatca acggttctga ggaacctctc tggctgggct      2520
     ggaccggaga tatatctcga gaagagaagg gctctcagcg aatctctgta gccatctcag      2580
     gaaccggatt aaaaggtcaa taccgattgg ataatgtgcg tacggtacag acactaaagc      2640
     ttcaaagtca gtcgttccag tataacgagc tccaaaaaat ctacccacac ctgcgaggac      2700
     tcccattgcg cagctattca gacgcggttc caaggatgat catcggcatc gagcatgcac      2760
     aattgctcac ttccctgaag gttcgagaag gcggtgcaaa tgatccagta gcagcaaaaa      2820
     cgcggctggg ctggtgcgtg tacgggaagc agatcgatgg aaacagcaca gttacccggc      2880
     ttcatgttca ctctgaggaa gttggtaacc gagaattaca cgagcaaatg aaacaatact      2940
     ttagcatcga agaggccgcg gtagctaccc cactggagtc agaggaagat agacgagctc      3000
     gcggtatact tgaaaaaaca actcgtcgaa tagacggagg ttttgagacc ggacttctgt      3060
     ggaaatatga tcggccatca tttcccaata gctatccact tgctgtacgc agaatgcagt      3120
     cattggagaa gaaactttca aaggaacctg cacttcaaga acgagttaat gaactaatag      3180
     ccgaatatga agtgaaagga tacgcccatc gaattacaca agcggaagtt cagtcgacaa      3240
     atttggaccg tgtgtggtac ctgccgcttg gtatcgtgag aaatcccaag aaaccagaga      3300
     agattcgtct aatttgggat gctgcggcgc gagtaaacgg tgtttcattc aacgacatgc      3360
     tcttgacagg gcccgacatg ttgacgtcat tatttgccgt cctactaagg tttcgtcaga      3420
     gggccgttgc cgtgtgtgga gacatccagg aaatgttcca ccaagtacgg atcatcaccc      3480
     aagataagca gtcccagcgg tttatttatc gtgaacatcc agatcaggca ccacaggtct      3540
     tcatcatgga tgtggcgaca tttggtgcaa agtgctcgcc atgctccgcg cagcacgtca      3600
     agaacacgaa cgcgaaggat ttcgcatcgc tttttccgaa ggctgccgaa gctattgtta      3660
     atgcacatta tgttgatgac tacttagata gcgtcgatac gatcgacgaa gcagttcaac      3720
     tagtggaaga agtgaaatac gtacacgccc aaggtggatt ccacatccga aacttctcat      3780
     ccaactctcc tgagctgcta caacgtttag gtcaaaccaa gccaattgaa gagaaatcca      3840
     tgatactcga caacgtcatg gatacggagc gggtgctagg tatgatgtgg aagcccgctg      3900
     aggacgtttt tactttcgac attaatttga aggatgatct tgcaaagcta ctattagaag      3960
     gaactgctcc cactaaacgg caggtgttga gaatcgtcat gtcgctgttt gacccatgcg      4020
     gattcattgc tcacttcata attcatggca agattctcat acagcacatc tggagatctg      4080
     gcactgattg ggatgatagt attgcggatg gtctactcgg cttatggcac cactggactc      4140
     gacttctaca acaattgatc gaagtgaagg ttcctcgctg tttcttcggc aatacaggta      4200
     gtaagctaca tgatggaata cagcttcacg tctttgtcga tgcaagcgag ctagcttacg      4260
     catgtgtagc atatctgcgg attgtcaaga acaagaaggt ggctgcgtat tcgttgcgtc      4320
     aaagacgaaa gttgcgcctc tcaagccgct ctctatccca cgtctggagc tgcaagctgg      4380
     attaataggg tgccgactga tggacaatat atgcacagcc ctagatctcc cgttggaagg      4440
     gcggtacctg tggacggatt caagaacatg cctctcgtgg attcgttcag atagccggcg      4500
     ctatcatcca tacataggct tcagggttgg tgaaattttg aatgtatctg tagtagatga      4560
     atggcattat gttccatcga aacaaaatgt ggccgacgat gcaactaaat ggggatgtgg      4620
     acctagcttc agcccaagta gtcgctggta taccggacca aattttctgt acttgacgga      4680
     aaacgaatgg cccgagcaac cacggaaaga aatgacaacc gatgaggagc tacgcgtagt      4740
     gtttcatcac catcgaaaaa tgccacaaac attgatcgac gtgaacaggt tctcgaattg      4800
     gaaccgtatt ttacgagcaa cagctttcgt gatcagatcc tctaaactgt tcaagaagga      4860
     acgtcatttt ggaccgctaa ccagcgaaga actactacag gcagaaaatt tattgtggcg      4920
     acaagtgcag aatgaaacat tccctgacga atactgcata ctggagttca acaaggtcaa      4980
     ccacggaatg gaacagaaac gaattgagaa aggtagcccg ctgtatgatc agtccccgtt      5040
     catggatgat gcaggtgtga tacgaatgaa tagtaggata aaggctgcac ctaccgtttc      5100
     attcggaatg aaatatccca tcatattgcc gaaggatcac cctctaacaa ctctacttgt      5160
     tgacagttac caccgtagat tcaaacatca gaaccgtgaa acggtgttga acgaaattcg      5220
     acagcagttc cgaataccga aattgcgttc cttgatacaa cgtgttgcca agaattgtca      5280
     acactgcaag gttaggaaga cagtgccgat accaccaatg atggcagcgc ttccgaaggt      5340
     caggctaaca cctcacatta gaccgttctg ctataccggt gttgactact tcggaccact      5400
     tctagtgaaa caaggtcgta gcttggtcaa acgctgggtg gcgctcttta catgtctcac      5460
     aacacgggcg atacatttag aaatagtgca tagtctctcc acgcagtcct gtattatggc      5520
     aattcgaaga ttcggcgcac gaagaggatt tccaaccgac ttctattccg acaatgggac      5580
     ctgttttcaa ggagctagca atttgctgac gaagcagatt gaagccattc atgaaggttg      5640
     tgctgtaaca tttaccaatg cgagaacgac ttggcacttt aacccaccat ctgcacccca      5700
     catgggaggt tcctgggaac ggatggtgcg ttcggttaag gaggcgatga gagccatttc      5760
     agaacatcct cgtcatccaa gcgacgaggt tctagaaact gtggtgctgg aagcggaagc      5820
     gattgtcaac tcaagacctt tgacatacgt accactagac aatgccgaac aagaagcctt      5880
     aacgccgaac cactttttgc tgtacggctc aagcggtata gtgcagccaa ggtcatcact      5940
     atcggatgaa ggagttgttc tgcgagatag ctggaaattg gtgcagcatc tagccgacga      6000
     gttctggaga cgttgggttc gtgaatactt accgacgttg acaaggcgaa ccaagtggtt      6060
     cgaaacggtt aaacctttgg aacctggaga tttggtgatt gtagtcgacg acaacaagcg      6120
     aaatgggtgg ctacgaggac gtattactga ggtcatgcga ggtaaggatg gtcaagtccg      6180
     aagtgcaatg gttagaactg cagatggtat aatgaagcga ccagcagtga aactggctcc      6240
     actagatgtt cgcgatgatc agatgcaggg taccccggaa ttacacggaa gggggga         6297
//
ID   BEL-159B_AA-LTR repbase;    DNA;    INV; 739 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 24.01, Created)
DT   07-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-159B_AA-I;
KW   BEL-159B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-739
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-739
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 62-62 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 739 BP; 226 A; 149 C; 149 G; 207 T; 8 other;
     tgttaaaaac cgccagtctt ccaacactgc agakgacggg gtgaattccg tatgctccct        60
     gtawccgtca tcatgacaag ggagttgaca gaacgtcaga acaaggtgtg aagacaaacg       120
     wtgtgaaaka ttggtcgatt cattgttcac tgttaaccgc attgtaaaac cgtgttaaac       180
     accaatttgc cwatagtagg ccaaatatta ttatcgcctg gacagcgttt ctccgaggag       240
     tagattatcc cttcctgtcg aaccacgagt tagttacacg agatcgaccc agggagcacc       300
     gtccaaggcc tttaattgcc gaccaagtcg ggctgaggtg ttcacaggcg agaaggtgat       360
     caacctttga accgtgagtt atttaattga atattcccta atttgtaacc taaaaaggtg       420
     aattgaaaac cctaattgwa cttatattta aagagcctac ttaaaatgtt acctagaact       480
     wtatacatgc tcwttttcca atacctaata ctaaactaca tgcatttgcc aggtgaggtg       540
     aatttcgttg cctatttgaa ttgttggcga gtcgaggttt ctaagataag gctgtagaac       600
     actgaatgtg agttatatga ggattatata tgtattaaaa tgacctaatg aaatctcaat       660
     aaattacagc tttaaagctg cttctgtaaa ggactgctaa cagaagtgtt tctactcaaa       720
     cccgttcgac tccacaaca                                                    739
//
ID   BEL-159_AA-I repbase;    DNA;    INV; 6150 BP.
XX
AC   supercont1.186;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-159_AA_;
KW   BEL-159_AA-LTR; BEL-159_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6150
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.186; Positions  538062  544211.
XX
CC   Positions [5204-5764] - Integrase core
CC   'GGTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..4754
FT                 /product="BEL-159_AA-I_2p"
FT                 /translation="MNSARTCGKCRIDGWVNHMVGCDMCDMWLHRECADVT
FT                 SETLDPNKSWRCERCLHDEATEVASHRTHRTTRTSSSIRAQRAELALKLLE
FT                 EEQELIKRNREKEDEFRRREQEIQKKRAEEDAKLLKQKHELLQSLEDENGS
FT                 VRSVMSSKASRKKVESWLGTAPGSVPAGIAEKPQASVDIDQSGIQKVITAS
FT                 APISNLFDTNATMEVNRPKSTSTSQKHLSTPSVIPYTTVPLSNLPLQGTSS
FT                 SSVSKWVGYYPGANVHTSSALPTIFESQSNATNVAQTNVSFGSPGITPTAP
FT                 FASKLGDSQLPPVYTAGSHKPSSESMSLGQIVSVNSGSQFGRVSNIVTTHS
FT                 GVSCSGQWNRPWTTSAVTTTPVSGPSFGISGQSGPGCPGFPATIGNSDAQR
FT                 IDGSHCTVPPCGQQFDTSFQQAPSGVQIAARQVMPKDLPSFTGDPQDWPLF
FT                 SSSFYNSSAACGFSDAENLARLQRCLKGHALESVKSRLLMPQSVPHVMETL
FT                 RMLYGRPEILIHSLLQKLRSIPSPKNENLQSIITYGLAVRNLVDHMHIANL
FT                 EDHLRNPMLVHELVEKLPPQMRMQWSWYKRSICYVNLATFGEFMSELVKTA
FT                 TDVTIPSDSTIQQTKSINTGREKQKLYVHAEANEGQSAEAAVNLQNSLREA
FT                 EIVKRLCAYCSDENHEVARCPQFKALDMDGRWKAIRSKGLCRTCLIPHRKW
FT                 PCRSGKECGIDGCRFRHHALLHSRIATEPASEQVVRQNFHSVTKFSLFRYI
FT                 PVTLEGNGKKVDTFAFLDDGSESTLMESGLAAELNISGSSEPLWLGWTGDI
FT                 SREEKGSQRISVAIAETGLKGQYRLDNVRTVQTLKLQSQSFQYSELQKIYP
FT                 HLRGLPLRNYSNAVPRMIIGIEHAQMLTSLKVREGGANDPVAAKTRLGWCV
FT                 YGKQIDGNSTVTRLHVHSEEIGNRELHEQMKQYFSIEEVAVATPLESEEDR
FT                 RARGILEKTTRRIYGGFETGLLWKYDRPSFPNSYPLAVCRMHSLEKKLSKE
FT                 PALQERVNELIAEYEAKGYAHRITQAEIQSTNSDRVWYLPLGIVRNPKKSE
FT                 KIRLIWDAAARVNGVSFNDMLLKGPDMLTSLFAVLLRFRQRPVAVCGDIQE
FT                 MFHQVRIITQDKQYQRFIYREHRDQAPQVFIMDVATFGATCSPCSAQHVKN
FT                 TNARDFASLFPKAAEAIVNAHYVDEYLDSVDTIDEAVQLVEEVRYVHAQGG
FT                 FHIRNFSSNSPELLQRLGQTKQIEKKSMVLDDIIDTERVLGMMWKPAEDVF
FT                 TFDVNLKDDLAKLLLEGITPTKRQVLRVVMSLFDPCGFIAHFIIHGKILIQ
FT                 HIWRSGTDWDEGITDGLLGLWHHWTRLLQQLIQVKVPRCFFGNTSSKLHSG
FT                 IQLHVFVDASELAYACVAYLRIVKNKKVCCVFVASKTKVAPLKPLSIPRLE
FT                 LQAGLIGCRLMENICTALDLPLERRYLWTDSRTCLSWIRSDSRRYHPYIGF
FT                 RVGEILNVSVVDEWHYVPSKQNVADDATKWGCGPSFSPNSRWYTGPNFLYL
FT                 TEEEWPEQPLKEMTTDEELRVVFHHHREVRQTYCTGNSFLDKSR"
FT   CDS           4895..6148
FT                 /product="BEL-159_AA-I_1p"
FT                 /translation="MDEAGVIRMNSRINAAPTISFEMKYPIILPKDHPLTT
FT                 LLIDSYHRRFKHQNRETVLNEIQQQFRIPKLRPLIQRVAKNCQYCKVRKAM
FT                 PRPPMMAPLPKVRLTPHIRPFCYTGVDYFGPLLVKQGRSLVKRWVALFTCL
FT                 TTRAIHLEIVHSLSTQSCIMAIRRFGARRGFPTDFYSDNGTCFRGASNLLT
FT                 KQIEAIHEGCALTFTNTRTTWHFNPPSAPHMGGSWERMVRSVKEAMGAISE
FT                 HSRHPSDEVLETVVLEAEAIVNSRPLTYVPLDNAEQEALTPNHFLLYGSSG
FT                 IVQPRSSLSDEGVVLRDSWKLVQYLVDEFWRRWVREYLPTLTRRTKWFETV
FT                 KPLEPGDLVIVIDESKRNGWLRGRIIEVMRGKDGQVRSAMVSTADGIMKRP
FT                 AVKLALLDVHDDPTQGTPELHGRG"
XX
SQ   Sequence 6150 BP; 1789 A; 1385 C; 1528 G; 1448 T; 0 other;
     aactttaaag attcactgat tgaatctatc actgcgcagt aagcagtagg aagttctgcg        60
     aagtaagcag caacatgaat tccgctcgga cttgcggaaa atgtcgcata gatggctggg       120
     tgaaccatat ggttggatgt gacatgtgcg acatgtggct tcaccgggaa tgtgcagacg       180
     ttacgagcga aaccctcgat cccaacaaaa gctggcgctg tgagcggtgc ctacatgacg       240
     aggcgacgga agtggccagc catcgcacgc accgcactac aagaacatca agcagcatcc       300
     gtgctcaacg ggctgagttg gctttaaagc tccttgagga ggaacaagag ctgatcaaga       360
     ggaatcgtga gaaagaggat gagtttcgcc gaagggaaca agaaatacag aagaagagag       420
     cagaggaaga cgccaagcta ctgaaacaga aacatgaact tctgcagtct ttggaggacg       480
     aaaatggaag cgttagaagc gttatgagca gtaaggcaag tcggaagaag gtagagtcgt       540
     ggcttgggac tgctcctggc tctgtaccag ccggaatagc cgagaaaccg caagcgtctg       600
     ttgatattga tcaatctgga atccaaaagg tgataacagc gtctgctccg atatcgaacc       660
     tgttcgacac aaatgctacg atggaagtca acaggcccaa atcgacgtca acatcccaaa       720
     aacacttaag tactccttca gttattcctt atacaacagt ccctctatcg aacttaccac       780
     tccaagggac cagcagttca tcagtttcaa agtgggttgg gtactatcct ggggcaaatg       840
     ttcacacatc gtccgcactt ccgacgattt ttgaatccca atcaaatgcg acaaacgtcg       900
     ctcaaacaaa cgtatccttt ggaagtccag gtattactcc aacggctcca tttgcttcca       960
     aattaggcga tagtcaattg cctccggtgt atactgccgg ttctcacaaa ccatcttccg      1020
     aaagtatgtc cttgggacaa atagtatctg tcaattccgg atcacaattc ggacgtgtat      1080
     caaatatagt tacaacgcat tcgggggttt cgtgttctgg gcagtggaat cgaccttgga      1140
     cgacgtcagc tgttactacc acacctgtat cgggtccgtc atttggtatt tctggacaat      1200
     ctggacccgg ctgtccaggg tttccagcaa caataggaaa tagtgatgct cagcggatcg      1260
     atggttcaca ttgtacagta cctccttgtg gacaacagtt tgatacgtct ttccagcaag      1320
     caccgtcagg cgttcaaata gcggcacgac aggtaatgcc aaaagatcta ccgtcgttca      1380
     ctggtgaccc acaagactgg ccgttatttt ccagttcatt ttacaactct tcggcagcgt      1440
     gtgggttctc agacgcggaa aatctagccc gattacaacg ttgcttgaag ggacatgcgc      1500
     tagaatccgt aaagagtcgt ctactaatgc cccagtccgt accgcacgtg atggagactt      1560
     tgcggatgtt atacggacga ccagaaatct tgatacactc actactgcag aagttgcgaa      1620
     gcattccttc acctaaaaat gaaaacttgc aatcaattat cacctacggt ttggcggtgc      1680
     gtaaccttgt cgaccacatg cacattgcaa atttggaaga tcacttgcgc aacccaatgc      1740
     tggtgcatga actagtggag aaacttccac cgcaaatgcg aatgcaatgg tcctggtaca      1800
     agcgctcaat ttgctatgtc aacctggcga ctttcggaga atttatgtca gagttggtaa      1860
     agacagcgac agacgtaacg attccatcgg attcgacgat acaacagact aaatccatta      1920
     atacggggcg tgaaaagcaa aagttgtatg ttcacgcaga agctaacgaa ggtcaatcag      1980
     cggaagcggc agtaaactta cagaactctt tgagagaagc ggaaatcgtg aaaagactat      2040
     gtgcttactg ttccgatgaa aatcacgaag ttgctcgatg ccctcaattc aaggctttag      2100
     acatggatgg cagatggaag gcgattagat caaaaggact ctgcagaact tgtttaattc      2160
     cacatcgaaa gtggccgtgt cgatctggta aggagtgcgg aatagacggt tgtcgattcc      2220
     gccaccatgc gttgctgcat tcgcggatag ctacggagcc agccagtgaa caagtcgtac      2280
     gacaaaattt ccattctgtg acgaaattct ctctatttcg ttatatccca gttacgctgg      2340
     aagggaatgg aaagaaagtt gacacgtttg cgtttttgga cgatggcagt gaatccacgc      2400
     taatggaatc cggacttgca gcagagttga atattagcgg ttcttcggaa cctctctggc      2460
     tgggctggac aggggatata tctcgagaag agaagggttc tcagcggata tctgtggcca      2520
     tcgcagaaac cggattaaaa ggccaatacc gattggacaa tgtgcgtacg gtacagacac      2580
     taaagctaca aagtcagtca ttccaatata gtgagctcca gaaaatctac ccacacttac      2640
     gaggactccc attgcgcaac tattcaaacg cggtaccgag aatgatcatc ggcatcgagc      2700
     atgcacaaat gcttacttcc ctgaaggttc gagaaggcgg tgcaaatgat ccagttgcag      2760
     caaaaacgcg gctgggctgg tgcgtgtacg ggaaacagat cgatggaaac agcacggtta      2820
     cccgacttca tgttcactcc gaggaaattg gtaaccgaga actacatgaa caaatgaaac      2880
     aatatttcag catcgaagaa gtcgcagtgg caaccccgct ggagtcagag gaagatagac      2940
     gagctcgagg tatacttgaa aaaacaactc gtagaatcta cggaggtttt gagaccggtc      3000
     ttttgtggaa atatgatcga ccatcgtttc caaatagcta tccacttgct gtatgcagaa      3060
     tgcattcgtt ggagaagaag ctttcaaagg aacctgcgct tcaagaacga gttaatgaac      3120
     tgatagccga gtatgaagcg aaaggatacg ctcatcgaat tacacaagcg gaaattcagt      3180
     cgacaaattc ggaccgcgtg tggtatctgc cgctcggcat cgtgaggaat cccaagaaat      3240
     ccgaaaaaat tcgcctaatt tgggatgctg cggcgcgagt gaacggtgtt tcattcaacg      3300
     acatgctcct aaaagggcca gacatgttga cgtcactgtt cgccgttcta ctaaggtttc      3360
     gtcagaggcc agttgctgtg tgtggagata tccaggaaat gttccaccaa gtacggataa      3420
     tcacacaaga caagcagtat cagaggttta tttatcgcga acatcgcgat caggcaccac      3480
     aggtattcat catggatgtg gcaacatttg gtgcaacgtg ctcgccatgc tccgcgcagc      3540
     atgtcaagaa tacgaacgcg agggatttcg catcactttt cccgaaggct gccgaagcta      3600
     ttgttaatgc acattatgtc gatgagtact tagacagcgt cgatacgatc gacgaagcag      3660
     ttcaactagt agaagaagtg agatacgtac acgcccaagg tggatttcac atccgaaact      3720
     tctcatccaa ctctcctgag ctgctacaac gtttaggcca aaccaagcaa atagagaaga      3780
     aatccatggt actggatgac atcatagata cggagcgggt gctagggatg atgtggaagc      3840
     ctgctgagga cgtttttact ttcgacgtta acttgaagga tgatcttgca aagctgctat      3900
     tggaaggaat aacgcctact aaacggcagg tgttgagagt cgttatgtcg ctgtttgacc      3960
     catgcggatt catcgcccac ttcataatcc atggcaagat tctcatacag cacatctgga      4020
     gatctggcac tgattgggat gagggtatta cggacggttt actcggctta tggcaccatt      4080
     ggactcggct cctgcaacaa ttgatccaag tgaaggttcc tcgctgtttt ttcggcaaca      4140
     caagtagtaa actacatagt ggaatacagc ttcacgtctt tgtcgatgca agcgaactag      4200
     cttacgcatg tgttgcgtat ctgcggattg ttaaaaacaa gaaagtgtgc tgtgtattcg      4260
     ttgcgtcaaa gacgaaagtt gcgcctctca agccgctctc tattccacgt ctggagctgc      4320
     aagctggatt aatagggtgc cgactaatgg aaaatatatg tacagcccta gatctcccgt      4380
     tggaaaggcg atacctgtgg acggattcaa gaacatgtct ctcgtggatt cgttcggata      4440
     gccggcgcta tcacccatac ataggtttca gggtcggtga aattttgaat gtctctgtag      4500
     tagatgaatg gcattatgtc ccgtcgaagc aaaatgtggc cgatgatgca acaaaatggg      4560
     gatgtggacc tagcttcagc ccaaacagtc gctggtatac cggaccaaac tttctatact      4620
     tgacggaaga agaatggccc gagcaaccac tgaaagaaat gacaaccgat gaggagttac      4680
     gcgtagtatt tcatcaccat cgagaagttc ggcaaacata ctgtacgggc aacagctttc      4740
     ttgataagag ccgttaaact gttcaaaaag gaccaccaat ctggaccgct gaccagcgaa      4800
     gaactactgc atactagagt tcaacaaggt taaccacagg aaggaacaga aacaaattga      4860
     gaagaatagc ccgttgtatg atcagtctcc gttcatggat gaggcaggtg taatacgaat      4920
     gaatagtagg ataaacgctg cacctaccat atcattcgaa atgaagtatc ccatcatatt      4980
     gccgaaagat catcctctaa caacccttct tatcgacagt taccaccgta gattcaaaca      5040
     tcagaaccgt gaaacggtgt tgaacgaaat tcaacagcag ttccgaatac caaaattacg      5100
     tcccttaata caacgtgttg ccaagaactg tcaatactgc aaggttagga aggcaatgcc      5160
     aagaccacca atgatggcac cacttccaaa ggttagacta acacctcaca ttagaccatt      5220
     ttgctatacc ggtgttgact acttcggacc acttctagtg aaacaaggtc gtagcttggt      5280
     caaacgctgg gtggcactct ttacatgtct cacaacacgg gcaatacatt tggaaatagt      5340
     gcacagtctc tccacacagt cctgtattat ggctattaga agattcggag cacgaagagg      5400
     atttccaacc gacttctatt ccgataatgg gacctgtttc cgaggagcca gcaatttgtt      5460
     gacgaagcag atcgaagcca ttcatgaagg ttgtgcatta acgtttacca atacgagaac      5520
     gacttggcac ttcaacccac catctgcacc ccacatggga ggttcctggg aacggatggt      5580
     gcgttcggta aaggaggcga tgggagctat ttcagaacat tctcgtcatc caagcgacga      5640
     ggttctagaa actgtggtgc tggaagcgga agcgattgtc aactcaagac ctttgacgta      5700
     cgtaccactg gacaatgccg aacaagaagc cttaacgccg aaccactttt tgctgtacgg      5760
     ctccagcggt atagtgcagc cgaggtcatc actatcggac gaaggcgttg ttctgcgaga      5820
     tagttggaaa ttggtgcagt atctagtgga cgagttttgg agacgctggg ttcgtgaata      5880
     tttaccgacg ttgacaaggc gaaccaagtg gttcgaaacg gttaaacctt tggaacctgg      5940
     agatttggta attgtaatcg acgaaagcaa gcgaaatggg tggctacgag gacgtattat      6000
     cgaggtcatg cgaggtaagg acggtcaagt ccgaagtgca atggttagca cggcagatgg      6060
     gataatgaag cgaccggcag taaaacttgc tctgctagat gttcacgatg atccgacgca      6120
     gggtaccccg gaattacacg gaagggggaa                                       6150
//
ID   BEL-159_AA-LTR repbase;    DNA;    INV; 696 BP.
XX
AC   supercont1.186;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-159_AA_;
KW   BEL-159_AA-I; BEL-159_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-696
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.186; Positions  537366  538061.
XX
SQ   Sequence 696 BP; 220 A; 148 C; 131 G; 197 T; 0 other;
     tgttaaaaac agccagtctt ccaacactgc agatgacgga gtgaattccg tatgctccct        60
     gtaaccgtct cgttaaccaa acgtcagaat gaggggaata aacaaaatgt gccaaatatc       120
     ggtcaattca ttgttcatcg ttggaccgca ttcgagtgac cattgtacga tcgtgttcaa       180
     cgccgatttg ccaatagtag gccagaaaat tatcatcacc tggacagcgt ccttccaaat       240
     cccgaacgag ctacacgaga tcgacccagg aagctccgcc cagttcctcg aatttgccga       300
     cgaagtcgga ctgataagtt cacaggcaag aaggtgtcca accttcttag atttgaaata       360
     cgcgaagttc tgacccgtga gttgtgaatc taaattacct aatctctaac ctaaattttg       420
     aattccaaat taaaattata tacatgcact tattctaatg ctcaatattg aactacatat       480
     attcgtcagg cgaggtgaat tacgattatt atttgagatt gttggcgagt cgtggtttca       540
     acgattaggc agtagaacac tgaatgtaag ttaatgaatt atgtttgtat taaaataatt       600
     taactaaatc tccaataaat tacagcttta aagctgcttc tgtaaagaac tgctaacaga       660
     agtgtttctg ctctaaaacc gttcgactcc acaaca                                 696
//
ID   BEL-15_AA-I repbase;    DNA;    INV; 5368 BP.
XX
AC   supercont1.135;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_AA_;
KW   BEL-15_AA-LTR; BEL-15_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.135; Positions 1111928 1117295.
XX
CC   'TATGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..5341
FT                 /product="BEL-15_AA-I_1p"
FT                 /translation="MDKSELEKLWAKREVMFAKAKWELSVAETLRTRNPTY
FT                 EEVQERKDKLTELAGNFDALQTSIEESTSNLQDVASVFNYRLQFDEVYFKA
FT                 KGLYTAFLEDNQDRMSNYSAGTGESVNDLRDAIRALVETQQALIMHQIQPS
FT                 AAPAAGQVSNKDHHLNVKLPQLNIPVFKGERKNWYSFNDLFVSTIHSRTDL
FT                 KDSLKMQYLLSYLDGEAKKMVSSFPISDANYSEAWETLVTHYNKKKYTVFA
FT                 LVREFIDQPSTTTVTGLKKLVATSDDVIRQLKALGNEFESRDPWLIHLLLE
FT                 KVDRETRSLWAQKIIDIDSPSFAEFLEFLQKRCDALETCTAFTKRPSGDIV
FT                 KKEYTKAHGGEKVQAFHANASPSSCAKCSKDHPIYHCDRFKEMEVAARREL
FT                 AQTSKLCFNCLRPSHSAKKCPSKSVCRSPDCKQRHHTLLCTQEARQADKKP
FT                 EQDQSNQESGLESTLASVNVNSAQTVDENREFTLLPTVVVQVEGSDGKFHN
FT                 VRGLVDSGSQVSLITEACVKRLGLRRSNAKLEVTGVNAEVVGKTAGKVTLV
FT                 LSSRYEDATKLTTQAYILGKLTATLPCQRFSVSNMPYLEGLQLADPQFNKP
FT                 GTMDIILGADLFLSILQSGQVKDHNGIPVAQRSVFGWMVAGRLPKQECIHT
FT                 YHSIINLHQEVDIDRTLRLFWEDQELHNPKQLTKDEQRVVEAFNSTLTRSQ
FT                 EGRFIVRLPMDDSKLKLGNSLIAATRRLRCMERRFDSDNDFKQRYMSFMQE
FT                 YQELGHMRIVPPSEIDADCSKSYYLPHHGVIKEDSVTTKLRVVFDGSSTTT
FT                 TGASLNDILLEAPNINADLFDVLLRFRSYPVVFLADIEKMYRQVLVHPDDT
FT                 DYMRIVWRDSPDKPIQHFRLLTVTYGLKNSGFLAMAALHKAAEAFEERYPK
FT                 AAERIIKHTYVDDLTSGADSAEEAIEIIKQINEILGEAGFTLRKWSSNSPE
FT                 VLDSLSDTISSAMPIQFPDERNTVKALGTHWLPTEDMFTFKVTMPTDGPNT
FT                 KHQLLSDSAKLFDPFGWFAPVIVRVKILYQKCWLYDLNWHDKLPPTIEEAW
FT                 VEVKESLHLLERVKLPRWSANYNGRIELHGFSDASEEAYSAVVYLRSVESN
FT                 NEVHVTLLAAKTKVAPVHQISIPRLELNAAELLAKLMKQVAAPLERFQIDQ
FT                 YAWTDSTIVLQWLSGHPRKWNTYIANRTSSILDTLPRKHWAHVASKENPAD
FT                 CASRGVSPLELVNHPLWWTGPSWLSDDSSTWNRDVPDEAYDQETLEVRKRY
FT                 QSLNVTVSLPATIYVVESEILERRSDLSAACWQLARVRRFVNNLRCSLTGE
FT                 NKVSGSILPSELREARMQFVRLAQQESYEGEVKALVRGEEIPAKSSIASLY
FT                 PFLDGTGTLRVGGRLQHSVYSFDVKHPIIVPKHHRLTKLLVEEIHVNNFHA
FT                 GPTLMTATINQRYWIQGCQTVIKQVIRRCLMCCRQKAQTAKQLMGSLPAAR
FT                 VTACRPFAHVGVDYAGPISVRCSNTRGARCMKGYIVVFICLSSKAVHLEVA
FT                 GDLTTDTFLGAFKRMIARRGYCNEVWSDNGTNLVGADRQLQEIYEVVTKHV
FT                 KQGEHFFTNLGIRWRFIPPASPHQGGIWEAAVKSAKELLRPILGNEKLTHE
FT                 ELSTVLCQVEACLNSRPLCPMSSNPDSLEALTPGHFLVGQPLNLLPEPDVT
FT                 HLKMNQLDRWQKVQRYTEEFWQRWRDEYIATLQPRGKWKTKQENLKPGNLV
FT                 LVKNDNSPPSAWELARIVAVHPDQQGLVRNVTLRRGKSEYQRSVQKLCPLP
FT                 D"
XX
SQ   Sequence 5368 BP; 1437 A; 1361 C; 1407 G; 1163 T; 0 other;
     ttttggtcct tcgcgtccgg gtattatgga caaaagtgag ctcgagaagt tgtgggcgaa        60
     aagggaggtt atgttcgcaa aagcgaaatg ggagttgtcc gtcgcagaaa cccttcgcac       120
     ccggaatccc acatacgagg aggtgcagga gcggaaggac aagctcacag aacttgctgg       180
     taacttcgac gcacttcaga cctcgatcga agagagcacc agcaacttgc aagacgtcgc       240
     gtcggtgttc aactatcggc tgcagttcga cgaggtgtat ttcaaggcca aagggttgta       300
     cacggcgttc ctggaggata atcaggaccg gatgtccaac tacagtgccg gaaccggaga       360
     atcggtcaat gacctgcggg atgcaatcag agcgctcgtc gaaacgcagc aagctttgat       420
     catgcatcaa attcaaccca gtgcagcacc cgctgccgga caggtgtcga ataaggacca       480
     ccatctgaac gtgaagctgc ctcagctcaa cattccagtg tttaaaggag agcgcaagaa       540
     ctggtactcc ttcaacgacc tgttcgtgag taccatccac agcaggacgg acctaaagga       600
     ttcgctgaag atgcagtact tactgtcgta tttggatggc gaagcgaaga agatggtcag       660
     ttcgtttccc atcagtgacg ccaactatag tgaagcctgg gaaacactcg tgacgcatta       720
     caacaagaag aagtatacgg tgtttgccct ggtccgagaa ttcatcgatc aaccttccac       780
     gacaactgta accggcctca agaagctggt ggccacatcc gacgatgtta tacgtcagct       840
     caaggctctc gggaacgagt ttgaatcgag ggatccgtgg ctcatccact tactgctgga       900
     gaaggttgac agagaaaccc gatcattgtg ggcgcagaaa attatcgata tcgacagtcc       960
     gtcgttcgct gaatttttgg agtttctgca gaagcgttgc gatgcactcg aaacgtgcac      1020
     agcgttcaca aaacggccca gtggagacat cgtgaaaaag gagtacacga aggcacacgg      1080
     tggtgaaaaa gtgcaagcct tccatgccaa cgcatcaccg tcatcgtgcg cgaagtgctc      1140
     gaaggatcac ccgatctatc actgtgatcg gttcaaggaa atggaggtcg cggcgcgcag      1200
     agagttggca caaacgtcca aactgtgttt caactgtttg cgcccctccc actcagcgaa      1260
     gaaatgcccg tcgaagtccg tatgccgttc tccagattgc aagcaacgtc accacacctt      1320
     gttgtgcaca caggaagcaa gacaggcgga caagaagccg gaacaggatc aatccaacca      1380
     agaatccggt ctggaatcaa cattggcgtc ggtgaacgtc aactcagcgc aaacggtgga      1440
     tgaaaatcgt gaatttaccc tactaccaac ggtggtggta caagtcgaag gaagtgatgg      1500
     caaatttcac aacgttcgag gactagtgga cagcggttcg caggtgtcgc tcataacgga      1560
     ggcgtgcgta aagcgtcttg ggttgagacg tagcaacgcc aaactggagg tcacaggtgt      1620
     gaacgcagag gtcgtcggta aaaccgccgg caaggttaca cttgtgttgt catcgcgcta      1680
     cgaggatgca acaaagctaa caactcaagc ctacattttg ggaaagctga cggcaacctt      1740
     gccgtgtcag cgcttcagcg tgtccaacat gccatacttg gaaggattgc agctggccga      1800
     tccgcagttt aacaagcctg gaactatgga catcattctc ggggccgatc tcttcttgtc      1860
     gattctacaa tcagggcagg tcaaggatca caacggaatt cctgtggcac agcgttccgt      1920
     cttcggatgg atggttgcag gaaggctgcc gaaacaagaa tgtatccaca cctaccattc      1980
     gatcatcaat ctgcaccagg aggttgacat cgatcgtacg ctgcggttgt tttgggaaga      2040
     tcaggagcta cacaatccca agcaactcac caaggatgaa caaagggtgg ttgaagcatt      2100
     caactccact ctaacacgtt cacaggaagg tcgcttcatt gtccgtttgc caatggatga      2160
     ctcgaagctc aaactgggaa actcgttgat cgccgctacc agacgactaa ggtgcatgga      2220
     acgcagattc gacagcgaca acgatttcaa gcaacgctac atgtcgttca tgcaggaata      2280
     ccaggaatta ggccacatga ggattgtgcc cccatcggag atcgacgcag actgctccaa      2340
     gtcgtattat ctgccgcacc atggcgtcat taaagaggac agcgtcacta ccaaactcag      2400
     ggtagtattt gatggctcat caactaccac gaccggagcg tcactcaacg acatactgct      2460
     ggaagcgccg aacatcaacg cagatctgtt cgacgttctg ctacgattca gatcgtatcc      2520
     ggtggtcttc ctagcggaca tcgaaaagat gtatcgccag gtgcttgtgc atcctgacga      2580
     cacggactac atgcgcatcg tatggcgaga ttctcccgac aagccaatcc aacattttcg      2640
     tcttctcacc gttacctacg gtttgaagaa ttcaggcttc ctagcaatgg cagcactaca      2700
     caaggccgcg gaggcattcg aggaaaggta cccgaaagca gcggagcgaa ttatcaagca      2760
     cacctacgtc gatgatctaa catcaggtgc agactcggcg gaagaagcga tagaaatcat      2820
     caagcaaatc aatgaaatcc tcggagaagc agggtttact ctacgcaaat ggagttcaaa      2880
     ctcgcctgaa gtactggact cgctatcgga taccatcagc agtgcaatgc cgattcaatt      2940
     tccagatgaa cgcaacaccg tgaaggcgct tggaacacac tggcttccaa cagaggacat      3000
     gttcacattc aaggtcacca tgccaactga cggaccgaat acgaaacatc aactgttgtc      3060
     ggattcggcg aagcttttcg acccgtttgg atggttcgca ccggtgattg tacgagtcaa      3120
     aatcctgtac caaaaatgtt ggctttacga tctgaactgg catgacaagc tgccacccac      3180
     catcgaggaa gcgtgggtcg aagtaaagga aagtctgcat ctgctggaac gcgtcaagtt      3240
     acccaggtgg tcagcaaact acaacggtcg catcgaattg cacggcttct cagatgcatc      3300
     ggaggaagca tactcggctg tggtttacct gaggtcagtg gaaagcaaca acgaagttca      3360
     tgtcaccttg ctggcagcga aaacgaaggt tgctcctgtt catcaaatat ccataccacg      3420
     tttggagctc aacgcagcgg aactgttggc gaaactcatg aaacaagttg ccgcaccact      3480
     cgaaagattt caaatcgacc aatacgcctg gacggattcc accatcgtat tgcagtggct      3540
     ttccggccac ccccgcaagt ggaacaccta catagccaac agaacgtcat cgattttgga      3600
     caccttgcct agaaagcact gggcacacgt cgcttccaag gagaatcctg cagattgtgc      3660
     atcccgtggc gtctctccgt tggagctcgt caatcatccg ctttggtgga cagggccttc      3720
     gtggctatcc gatgattctt ctacgtggaa ccgagacgta ccagacgagg cctacgacca      3780
     ggaaacactg gaggtacgta agcgctacca atcgctcaat gtcaccgtta gtcttccagc      3840
     cactatctac gtcgtcgaaa gcgaaatttt ggaacgtcga tccgatctct ctgccgcctg      3900
     ctggcagctc gcacgggtca ggcgattcgt caacaacttg cgatgttcgc tcaccggcga      3960
     aaacaaggtt tccggatcca tcttgccatc ggagctgcgt gaggcacgaa tgcagtttgt      4020
     tcgattggca caacaagagt cgtatgaggg agaagtcaag gcactggttc gtggcgaaga      4080
     aattccagca aaatccagca ttgcaagtct gtacccattc ctggatggta ccggcacgct      4140
     cagagtagga ggacgattgc agcattcggt ttattctttc gacgtcaagc acccaataat      4200
     cgttccaaaa caccatcgct taacgaaact gctggtggag gaaattcacg taaacaactt      4260
     tcatgccggc ccaactttga tgacagccac tatcaaccag cggtactgga ttcaaggttg      4320
     tcaaaccgtg atcaaacagg taattcgaag gtgcttgatg tgttgtcgtc agaaggcgca      4380
     gactgcgaaa cagttgatgg ggagtttgcc agcagcacga gtgacagcgt gtcgcccttt      4440
     cgctcacgtc ggggtagatt acgctggccc gatatctgtt cgttgcagca acacgcgagg      4500
     agcacggtgt atgaaaggat acatcgtcgt ttttatctgc ctttcaagta aagccgtcca      4560
     cttggaagtg gcaggtgatt taaccaccga tacttttctg ggagccttca agagaatgat      4620
     cgcacgacgt ggctattgca acgaagtgtg gtcggataac ggcacgaatc tggttggagc      4680
     tgatcgacag ttgcaggaga tttatgaggt ggttacgaag cacgtcaagc aaggagaaca      4740
     cttcttcacc aatctcggaa ttcgttggcg attcatccca ccagcaagcc cgcatcaagg      4800
     cggtatatgg gaagcggcag tgaaaagcgc caaggagctg cttcgaccga ttttgggaaa      4860
     cgagaagctc acccacgagg aattatcaac agttttgtgt caagttgagg cttgtctcaa      4920
     ttcgagaccc ctctgcccta tgtcatctaa tcccgacagt ctcgaagcgc ttacaccggg      4980
     acattttttg gttgggcagc ctctcaacct gctgcctgaa ccggacgtta cccatcttaa      5040
     gatgaatcaa ctagatcggt ggcaaaaggt gcaacgttac acggaggagt tttggcaacg      5100
     ctggcgcgat gaatacattg ccacgttgca gcctagagga aaatggaaga ccaagcagga      5160
     gaatttgaaa cctgggaatt tggtgctcgt taagaacgac aatagcccac cgtcagcttg      5220
     ggagctggct cgcatcgtag ctgttcatcc ggatcaacag gggttggttc gcaacgtcac      5280
     tcttcgcaga ggcaagtcgg agtaccagcg ttccgtccag aagctatgcc ctctgcctga      5340
     ttgagccgtt gcctcaaggc ggggtgga                                         5368
//
ID   BEL-15_AA-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   supercont1.135;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_AA_;
KW   BEL-15_AA-I; BEL-15_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-244
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.135; Positions 1111684 1111927.
XX
SQ   Sequence 244 BP; 55 A; 65 C; 47 G; 77 T; 0 other;
     tgttcatgat catcaatgcg tcgacccctc gacgcgccgc cactctacca cttttctttc        60
     ttgttaacat ttttatacga acagaattat taaagtacag tacatggaac aagtcggtcg       120
     tgttttattc tttctccgtc ggaatcgttc gaaaaagtat tcgcgagagt attacggtcg       180
     tgccggaagt cagttcccgg tccaagtttc tccctccctt tcgctacggt ccattccggt       240
     aaca                                                                    244
//
ID   BEL-15_AnFu-I repbase;    DNA;    INV; 5928 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_AnFu-I;
KW   BEL-15N1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5928
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 667-667 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..5892
FT                 /product="BEL-15_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MDKKIKSVLLKKRQSEAYIARLEQFMLNYDESNADEL
FT                 STCLEQLESHHQNFLNAIGKLEELDDKDDTVTACINDRCDMDELYRKLRGF
FT                 FLKHKPMENHTVNNSLLLSSTAALNSSSSVNIRLPKIELPTFDGDDTKWLT
FT                 FRDRFVAMIDSSAEIPTIMKLQYLLASLKGDAALPFEHTSLTADNYAVTWT
FT                 MLLKRYDNKRMLCREYYRRLHFLPSVEGNNVDELTSLVDEFTRHVNGLRKL
FT                 EQPVDDWDVPLTNILFLKLDSESLLAWERHSSTSLQDKYSDLISFLQERIR
FT                 ILRSTLNLAKNKELGSITVAGKNHKSSAAVKGPASSPSYHRSASHAATALR
FT                 EKPMHQTSCLLGCSDRHPLRMCPVFDRKLVKDRRDIVLKRRLCFNCLSADH
FT                 QAHACNSKYSCRFCNERHHTLLHVASSVSAPSSPTSSNSPAKITMSAQSAE
FT                 SQEQDTVLLETAIINIVDDHGQQIKARALLDSGSTSNFITESLAKRLQTPQ
FT                 KKVNIVISGIGQAVQEVKNSIVATIESKRQEFSTKMEFFILRAPTSDIPSA
FT                 PIDVSSWQVPDVTLADPNYHTPGQIDVVIGGEAFWELHTGRKRALGPGKPW
FT                 LMETPFGWVVAGNATYMNPHAKTFGSSSTAITTDAVESMLQRFWEQETVAE
FT                 GPALSVQENYCEEHYASTVDRDQSGRYVVRLPRNTTNGAILGASREIADRR
FT                 LLSVERRLRTNATMARAYNEFMDEYEKLGHMKKLTEPVDDTIPHCYIPHHA
FT                 VVKESSTTTKVRVVFDASCKTSSGYSLNDTLLVGPILQEDLFSIILRFRTH
FT                 VIAIAADIEKMYRQILHHVDDRSLLRIRYRRNATDPISTYELATVTYGTAS
FT                 APFLATRTLQQVAHDHQRQFPEAVDAMRHDFYVDDLLSGGSNISEVVKKRN
FT                 QITSMLGAAGMVLRKWTSNCSEALAGVPAENLAIQSVHQLEDQSVSTLGLV
FT                 WEPRNDCFRFQVDLPPPPSSLTKRQALSYIAKIFDPLGLLGPTIVISKMFM
FT                 QRLWTLKKDGKAWDWDSTLPTQLQEEWNQYHYALFRLREVRVPRFISLEHA
FT                 LVVQLHMFADASQSAYGACGYIRAEATQRVSVQLISAKSKVVSMTNTHSIA
FT                 RLELCAAKLATQLYKKIIKATRFNIKVYFWTDSTTVLCWLKSLPSRWKPFV
FT                 ANRVAQIQRDTDGMCWRHVPGKDNPADDISRGVTAADLLNRQRWWRGPPWL
FT                 VQVESEWPSQVPQKDEGELVDEERKVSPAFTCTTTTRDFSNALFAKYSSYH
FT                 KLRRVVAYIFKYVHCLKTKAYSSQHTQRYVAKDKSEAAIPDITVTSITTEE
FT                 LRLAEIALCKLAQQDMLSGDIKDLRAGRQVSPTSKLKWLKPYLDETGVLRI
FT                 GGRLGNMTASTYSKHPIVLTASHPLAVLLATAYHLRLLHAGPQLLLATLRQ
FT                 RFWIIGGRNLVKSIYHRCLQCFKTKPTLIQQSVADLPESRVTPTRAFSVCG
FT                 VDYCGPLFIKSSVRNRSPSKAYIAIFVCFSTRAIHIELVSDLTTTAFLSAL
FT                 RRFVARRGMVKELHSDNATTFKGAANELHRVYKMLKQNEEERKAIFDWCAE
FT                 NGMVWRFIPPRAPHFGGLWEAAVKSAKHHLLRTIGTTSISYENMVTLLTQI
FT                 EACLNSRPLVPMSDDPCDLEVLTPGHFLVGSNLQSVPDVDYSSIALNRLND
FT                 YQLVQRNVRCIWQRWQREYTQQLQARSSFGSRTSIELKENQLVLVREDNVH
FT                 PTVWPKGRIVKLHPGKDGVIRVVTLRTAPDKYIVRPVARLALLPEPLQSEI
FT                 S"
XX
SQ   Sequence 5928 BP; 1696 A; 1391 C; 1352 G; 1489 T; 0 other;
     ttttggtcct tcgaaccgga tctgtgtttc gtaattcaat taatttgtgc aaataattag        60
     ggcactacgt gaccttagtt aagtcctttg tgcaagttaa cgtatattgt gctaagctta       120
     cggcttacag aaagcgcaat cgtcgccccg ctatcaaggg cacgcacata gagtatccta       180
     ctctatcgta gaagttccat ctaatggtcg tgttcgtgca atcgaataac tagtgtgccg       240
     ttcgaatcgt gttagtgtac gctggtggtg tgaattgtgt tgctacaacg caggctccta       300
     cggacaatct ccgcatcgtt cgcgtcatct accgccatcg cataagtgga cgtttaccgc       360
     atcatcaggt ttcggtcgac aacctcatca ccggacgcgc caattcggat agcatcctct       420
     catcgtcatt acgcatattg gcagagaggt gcttaccact acaatcgtgc caagtaaacc       480
     gcgtcgtttt gtgcttagta cgctacactc ggagttgcgt acaagttttg catacaacat       540
     agctttcagt gctctcctac tgcgaaataa ttcactatgg acaaaaaaat caaaagtgta       600
     cttttaaaga aacgacaatc tgaggcgtat attgcacggt tagagcaatt tatgttaaat       660
     tatgatgaaa gcaatgccga tgagctttct acgtgtttgg aacagttgga gtcacatcat       720
     caaaacttcc taaatgccat tggtaaatta gaagagttag acgacaagga cgatactgtc       780
     actgcgtgta tcaacgatag gtgtgacatg gatgaactct atagaaagtt acgtggtttc       840
     tttcttaagc acaagccaat ggaaaaccat acagtgaaca attcattact gctttcgagt       900
     acagcagcgt taaacagctc aagctcagtg aatattcgtc tccctaaaat agagctacca       960
     acgttcgacg gtgatgatac gaagtggctg acgtttagag atcgattcgt tgctatgatc      1020
     gattcatcag ccgaaatccc gacgataatg aagttgcagt atttgctcgc ctccctgaaa      1080
     ggtgatgctg ctctaccgtt tgagcataca tcgctgactg ccgacaacta tgcagtaact      1140
     tggaccatgt tactgaagcg gtacgacaac aaacgtatgt tgtgtcgcga gtattatcgg      1200
     agactccatt tccttccatc ggtggaggga aacaacgtgg atgagctgac ttcactcgtg      1260
     gatgaattca ccagacacgt taacggactg aggaaactgg aacaacccgt ggatgattgg      1320
     gacgtgccgc tgacaaatat cctctttctg aagctggact ccgaatcact attggcttgg      1380
     gaacgacact cttctacgtc gcttcaagat aagtattcgg atttaatcag ctttttacag      1440
     gaaagaattc ggatcctgcg atcaacactc aacctggcta agaacaagga gttaggctcg      1500
     atcacggtgg ccgggaaaaa tcataagtcg agtgccgcgg tcaagggacc cgcatcatcg      1560
     ccatcctatc atcgttcggc gtcccatgct gcaaccgcac tccgtgagaa gccaatgcat      1620
     caaacatcct gtttattggg ttgctcggac cgacacccac tgcgcatgtg tccggtattt      1680
     gaccggaagt tggtcaagga tcggcgagac atcgttttga agcggcgatt gtgttttaac      1740
     tgcctatcag cggatcatca ggctcatgcg tgcaattcca aatattcgtg ccggttttgc      1800
     aacgagcgtc accatactct actgcatgta gcatcgtccg tttctgctcc atcatcgcct      1860
     acgtcatcaa attctccggc aaaaatcacc atgtcggcgc agtcagctga gagtcaggaa      1920
     caagacacgg tcttgttaga gaccgcaatc ataaatattg tagacgacca tggccagcaa      1980
     atcaaagcac gagcgctgtt agattccgga tcaacctcaa acttcatcac ggaatcgttg      2040
     gctaagcgtc tgcaaacgcc gcagaaaaag gtcaacatcg tcataagcgg tatcggacaa      2100
     gcagtacagg aagtcaaaaa ttctatcgtg gctactatag aatctaaaag acaagaattc      2160
     agtactaaaa tggaattctt tattttaagg gcacctacat cagatattcc ttcggctcca      2220
     attgatgttt cttcatggca ggttcctgac gtcacactgg ctgatccaaa ttaccacact      2280
     ccaggccaaa tcgatgtggt aattggtggg gaagccttct gggaactgca tacaggccgc      2340
     aaacgagcgc ttggaccagg caaaccgtgg cttatggaaa caccgtttgg ctgggtggta      2400
     gccggaaatg caacgtatat gaatccacat gctaaaacgt ttggttcgtc aagtacagct      2460
     atcacaacag atgcagtcga atccatgcta caacgttttt gggagcaaga aactgttgcc      2520
     gaaggacccg ccctctcagt acaagaaaat tactgtgaag aacactacgc atccacagtg      2580
     gatcgagatc aatcaggcag gtacgtggtc agactacccc gaaacacaac taatggtgca      2640
     atcctgggtg cttcacgcga aattgcggat cgtcgcttat tgagtgtaga acgacggtta      2700
     agaaccaatg ctacgatggc aagggcttac aatgagttca tggacgagta tgagaaacta      2760
     ggccatatga agaagcttac cgaaccggta gatgatacta ttcctcactg ctacataccg      2820
     catcacgctg tcgtcaagga atcaagtacc actaccaagg ttagggtagt gtttgatgcg      2880
     tcatgcaaaa catcatcagg atattctttg aacgatacac tgctagttgg tccgattttg      2940
     caagaagatc tcttctccat catcttgaga ttccgcacgc atgtcattgc catagccgcc      3000
     gatattgaga aaatgtatcg tcaaatactc catcacgtcg atgataggag tctcttgcga      3060
     atacgataca gaaggaatgc cacagatccg atctctactt atgaactggc cacagtgact      3120
     tacggtacag cttcagcacc ttttctagca accagaactc tacaacaagt ggcacatgat      3180
     catcagcggc agttcccaga ggcggttgat gccatgcgac atgatttcta tgtcgatgat      3240
     cttttgtcag gaggaagcaa catctcagaa gtagtgaaga agcgaaacca aatcacttca      3300
     atgcttggtg cagctggaat ggtactacga aaatggacat cgaattgctc tgaagcatta      3360
     gcaggcgtcc ctgcagagaa tctggccatc caatccgttc accagctaga agaccaatct      3420
     gtctcaacat tgggtttggt ttgggagcca aggaacgatt gctttcggtt ccaagtagac      3480
     ctaccacctc ctccttcatc gttaaccaag cgccaagcat tatcctacat cgcgaagatc      3540
     tttgatccac tcggactgct aggtcccacg atagtaattt caaaaatgtt tatgcaacgt      3600
     ctatggaccc taaaaaagga tggaaaggca tgggattggg atagcacttt gccaacacaa      3660
     cttcaagagg agtggaacca ataccactac gcattatttc gactgcgaga ggtacgagta      3720
     cctcgattca tctctttgga gcacgctctc gtcgttcaac tacacatgtt tgcggacgca      3780
     tcacagtctg cttatggagc ttgcggttac atacgggcag aagcgacaca gcgtgtttcg      3840
     gtgcaattaa taagtgcgaa atccaaggtc gtatctatga caaatacaca ttcgatagca      3900
     agactggagc tttgtgccgc aaaactagcc acacaactct acaagaaaat aatcaaggca      3960
     acgagattca acatcaaggt gtatttctgg actgattcta ccacggtatt gtgttggttg      4020
     aaatccctgc cgagtcgctg gaaaccgttc gtggcgaacc gagttgcaca gattcaacga      4080
     gatacagatg gcatgtgttg gaggcacgtt cctggaaagg acaaccctgc agacgacatc      4140
     tcgcgtggtg taacagcagc tgatctgctc aatcgacaac gatggtggcg tgggccacct      4200
     tggttagtac aagttgaaag cgaatggcca tcgcaagttc ctcaaaagga tgaaggtgaa      4260
     ttagtagacg aagagcgaaa ggtttcacca gcattcacct gtacaaccac cacacgagac      4320
     ttctccaacg cactgtttgc caaatattca agctatcaca aacttcgccg agtggtagca      4380
     tacatcttca aatatgttca ctgtttgaaa accaaagcat attcatcaca gcatacgcaa      4440
     agatacgtcg ccaaagataa gtcagaagca gctattcctg atatcaccgt aacctccatc      4500
     acaactgaag aacttcgtct ggcggaaatc gcactatgta aactggcgca gcaggatatg      4560
     ctcagcggag acatcaagga tttaagggct ggacgacaag tatctccgac gtcaaagctg      4620
     aagtggttga aaccgtattt ggacgagaca ggggtgcttc ggattggtgg ccggcttgga      4680
     aacatgacag cgtcaacgta ctccaaacat ccaattgtcc tgactgcttc tcatcccttg      4740
     gcagttctct tagcaacagc atatcatcta cgattattgc atgctggacc tcaactcttg      4800
     ttagcaacgc tccgacaaag gttttggata attggaggaa gaaacctagt aaaatcaatc      4860
     taccatcgct gtctgcaatg cttcaagacc aaaccgacac tgattcaaca aagtgttgct      4920
     gatctgccag agtcaagagt aacaccaacc agagcgtttt cggtttgtgg cgtagattat      4980
     tgcgggccat tattcattaa gtcaagcgtt cggaatcgta gtccaagcaa ggcatacatt      5040
     gctatttttg tatgtttttc aacccgagcc atacacatcg aattggtaag cgacttaaca      5100
     accacggcct ttttatccgc acttcgtcgc ttcgtggcac gcagaggaat ggtaaaggag      5160
     ttgcattccg acaacgccac aacgtttaaa ggtgcagcaa atgaactgca tcgtgtctac      5220
     aaaatgctga agcagaatga ggaagaacgt aaggctatct tcgattggtg tgcagaaaac      5280
     ggaatggtat ggcgttttat accacctcgg gctcctcact tcggaggact ctgggaagct      5340
     gctgtcaagt cagcaaagca tcatctactg cgaaccatcg gaacaaccag catatcgtac      5400
     gaaaacatgg ttacattatt aactcagata gaagcctgtt taaactcacg acccttagtg      5460
     ccaatgtcag atgatccttg cgatctcgag gttctcactc caggacattt tctcgtcggt      5520
     agtaatttac aatctgttcc cgacgtcgac tatagcagca ttgcgttaaa ccgattgaac      5580
     gattatcaat tagtccaaag aaatgttagg tgcatttggc agcgttggca aagggagtat      5640
     acccaacaac tacaagcgcg atcgtcattc ggtagtagga catcaattga actcaaggaa      5700
     aatcaattag tactcgttag ggaagataat gttcatccca ccgtgtggcc gaaggggcgc      5760
     atcgtaaagc tccatcccgg taaggacggc gttattcgtg tagttacctt acgaacagca      5820
     cctgataagt atatcgtacg cccggtagcg cgattagctt tattacctga gccactacaa      5880
     tcagagatca gttaatttaa aagaatttca ttcttttggt ggccggaa                   5928
//
ID   BEL-15_AnFu-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-173
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 719-719 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 173 BP; 67 A; 27 C; 27 G; 52 T; 0 other;
     tgttggagtt acttgggtag aaatgaactt aatcttgaaa taatgaactt taataatgaa        60
     ttttatagaa ctagttgtaa tgaattacta aaacagttga atacacgcta gcaagcagaa       120
     cacacgcatt cttctaaagc aattacgata tcacaaccgg taaattctct aca              173
//
ID   BEL-15_CQ-I repbase;    DNA;    INV; 6497 BP.
XX
AC   AAWU01030696;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_CQ_;
KW   BEL-15_CQ-LTR; BEL-15_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6497
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 183-183 (2011).
XX
DR   Genome; AAWU01030696; Positions   23506   30002.
XX
CC   Positions [5544-6104] - Integrase core
CC   'CTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..3072
FT                 /product="BEL-15_CQ-I_1p"
FT                 /translation="MSKPPITRQTRSQTRAAQELARHNLQTEEVVDEGADL
FT                 QFEASVVDLQGGEEVDCGSCIRPNNAETFMVQCSRCFLYYHFSCAGVTVAT
FT                 VNLQPFICKTCIPLGPPEKIPSARSGTTSSLRSSQLSLELRRVEEEIQLEE
FT                 EISQQLERKKKLIAKRYDLMSQRDDVKSRSSGRSNRTTPNRVLNWIETQGK
FT                 AGKSDPADSVNLLSGNPVGRLNAGLTSTPVNKSKSVDDLAQLAKLPAGGIS
FT                 GPDPNKPPGQLDLDSIPEVPNKPQNNPFSKGAVGKLFKPTTLYENWLDQIN
FT                 RKPPANKPDDVGRQLADKALAEKLARLEDQRKQDQNLQRERERKLKHQLQR
FT                 AEQERLELIREKDRVLAENQNHQKRFDEFQEDLINQFNEMLNQQQNNINSR
FT                 PESSDNWYDRELQQLQRSRELNFKRNEPTPTHSVHSSLPSISEGIGSLPSP
FT                 YGGRTESSHPTIPPQEDPEVSSCSTIPPRPVPSGSHTRPSKSCLDPPPLTS
FT                 HQIAARQVVSKELPDFFGDPAEWPLFISRYNHSTKACGYTDSENLLRLDRA
FT                 IKGYAREMVSSLLLDPSTVPELLSSLKLLYGRPEQIVHNLIAKVRATPAPK
FT                 ADKLESLVTFGLVVRNLCGHLRAIGMEKHLSNPTLLSELVEKLPANVKFNW
FT                 ALYQHQLKEVDLNSFGSYMSQIATATSGVTVLSTAPRAGRDERQKSKEKGF
FT                 VNAHAEQEETSDGEGRDQPKERLNVVNKIETHKACPACGVEGHSAKDCIQF
FT                 KDLSLDDRWKVVKAKKLCRRCLTPHSRWPCNAEACGVNGCQKRHHRLLHYD
FT                 HPPVEPQRTEPTNATVTIHRQPNPTTLFRILPVTLYGARGQVDTFAFLDDG
FT                 SSVTLVERSIANKLGIAGEDSSLCIHWTGGIKKNISNTQLVDLEISGVNNT
FT                 NRLKAKAVYTVEGLGLPDQSMNFEAMAAKYDYLRSLPVQNLMSAVPGVLIG
FT                 LNNLHLMAPLKLREGREGEPIATKTRLGWAVYGAIPGREAPFLHRQMHTRI
FT                 VMNYITTL"
FT   CDS           join(3459..5159,5163..6497)
FT                 /product="BEL-15_CQ-I_2p"
FT                 /translation="MFTTIICDVIYVAAELLPPYPIDLYLLVVPDLLSPLL
FT                 SVLFKFRERQVAIGGDIEAMFHQVRIREADRSAQLFYWRDSPEKPLETMVT
FT                 DVAIFGASCSPAHSQYVKNLNATQHEIDYPRAANAIRTKHYVDDYLDSVDT
FT                 SEEAAEIALEVAEVHSRAGFHIRNWVSNNAAVLQRIGAANPTTVKRFVMDK
FT                 DCGFERLLGMVWLPEEDMFTFRLSFREDHDLLLSGEEIPTKQQLLSVVMSI
FT                 YDPTGFLAAFIIHGKIIIQDVWRSGVDWKNKIPDELVQRWKQWIALLPKIE
FT                 DLKIPRCYFPGYHPDSLRSLELHVFVDASELAYSAVAHFRLVDRGSVRCAF
FT                 VASKTKVAPLDPLSIPRLEANAGVLGVRLRKSIVTGHSLPITRTRFWTDSK
FT                 TVLQWIRSKDLRRYRPYVAFRMNEILSMSAVAEWGYCPSRLNVADLATKWG
FT                 KQGPPLDINSPFYQSQEFVYDNPSEWPEPCEDMVELAPEELRPSFVFAHFV
FT                 LKPTVKWERFSKWERLLRTMAYVQRFIARKLNREKKPWQVDLTREELQKAE
FT                 QSLWRLAQSEEYPDEVATLNNQRVPADQRESLERSSNIVKLCPMLDDAGVL
FT                 RVSGRIQAAECVGYETKHPVILPRDHPVTTLLLEYYHRRFQHSNNETVVNE
FT                 IRQNFSIPKLRVLVRLVSNNCKWCEVYKSTPVVPQMAPLPRARLSPFLRPF
FT                 TFTGVDYFGPYLIKTGRSITKRWVALFTCLTIRAVHLEIVANLSTESFKKA
FT                 VRRFIARRGAPQEIYSDRGTNFQGASSELTKEISLSINKELASTFTDAHTQ
FT                 WRFNPPAAPHMGGSWERMVRSVKAALGAIPLERKLDEESMVTMLTEAEHMV
FT                 NSRPLTFIPLEGADQESLTPNHFLLMSSSGVQQPVKDPMCEGAALRNSWNQ
FT                 IQHTLDEFWRRWVREYLPTLSRRSKWFEETRPLREGDLVVVVDEGTRNRWQ
FT                 RGRVLRTYPGKDGRVRRVDVQTAKGILPSRAVARLALLDVGNVGDAEGTLP
FT                 ATRGGE"
XX
SQ   Sequence 6497 BP; 1750 A; 1590 C; 1685 G; 1472 T; 0 other;
     gaaaactcaa agatttacct gttcaacaat atgagcaagc caccgattac tcggcagact        60
     cgttcccaga cgagagctgc ccaagagctt gcgagacata acctacaaac cgaggaagta       120
     gttgatgagg gtgcagatct acaatttgaa gcctctgtgg tagaccttca aggaggagaa       180
     gaagttgact gcggtagttg cattcgaccc aataatgccg agacgtttat ggtccaatgt       240
     tcgcgatgct tcctctacta ccacttctcg tgtgcgggag tgaccgtcgc caccgttaat       300
     ctccagccgt tcatttgtaa gacctgtatt cctctcgggc cgccagagaa aatcccttca       360
     gctcgctctg gaacaacttc gagcttacgt agctcacagc tttcgttgga actacgaaga       420
     gtggaggagg agatacaact ggaagaggag atttcccagc agcttgaacg caagaagaag       480
     ttgattgcta aaagatacga tcttatgagc caaagagatg atgtcaagtc gcgcagcagc       540
     ggtcgtagta accgaacgac gccaaataga gttctcaact ggatcgagac acagggaaaa       600
     gccggtaaat ccgaccctgc cgattccgtg aacttactga gcggtaatcc ggtcggccgg       660
     ctcaacgcgg gactcacatc tacaccggtg aataagagca aatctgtaga tgacctggca       720
     caacttgcaa agcttccagc tggaggaatc agcggtcctg atccaaacaa acctccgggc       780
     caactggacc tcgattcgat tcccgaagtt ccgaacaaac ctcagaacaa tcctttctcg       840
     aaaggagccg ttgggaaatt gttcaaaccg actacgctgt acgaaaactg gctggatcaa       900
     ataaatcgga agccaccagc taacaagccg gatgatgtcg gccgtcaact ggctgataaa       960
     gcattagctg agaagcttgc acgattggaa gatcaacgta aacaggacca gaacctacaa      1020
     cgcgaacgag aacgaaagct gaaacatcaa ctgcaacgtg cagagcagga aagactggag      1080
     ctgattagag agaaggatcg tgtcctggcc gaaaaccaaa accaccagaa gcgatttgac      1140
     gaatttcaag aggacttgat aaaccagttc aacgagatgc taaatcagca gcagaacaac      1200
     atcaatagcc gacctgaatc ctcggacaac tggtatgacc gggagctgca gcagttgcag      1260
     cgatcacgag agttgaactt caaacgaaac gaacccacac caacacacag cgtacattct      1320
     agtttgcctt ccatttcgga gggaattgga agcctgccga gcccgtacgg aggacgcacg      1380
     gaatcatctc atcctacgat accgccgcag gaagatccag aagtttcaag ctgctccact      1440
     attccaccac ggcccgttcc gtccggttct catacccgac catcgaaatc gtgtctggat      1500
     ccacccccgc tcacatccca tcaaatagct gcgcggcaag tggtgtccaa ggaactgcca      1560
     gacttctttg gtgatcctgc tgaatggcca ctgttcatca gtagatacaa ccactcgaca      1620
     aaagcgtgtg gctatactga ttcggaaaat ctgctacgtc tagatcgagc tatcaaaggg      1680
     tacgcgaggg agatggttag cagcctactg ctcgacccat ccacggtgcc ggagttactg      1740
     tcctcgctga aacttctcta cgggagaccc gagcagatcg tgcacaacct gatcgccaaa      1800
     gtgcgagcca caccagcacc aaaggctgac aaattggagt cgttggtgac ctttggattg      1860
     gtagtgcgta acctgtgcgg acacctaagg gcaatcggaa tggagaagca cctttcgaat      1920
     ccgacattgt tatccgagct ggtggagaag cttcccgcca acgtgaagtt caactgggct      1980
     ttgtatcaac accagctgaa agaggtagac ctgaattcct ttgggtctta catgtctcag      2040
     attgcgacgg cgacgagtgg agttaccgta ctgtctacgg cccctagagc tggtcgggac      2100
     gagcgtcaaa aatctaagga aaaaggattt gtcaacgcgc acgctgaaca agaagagaca      2160
     agcgacggtg aaggtagaga ccagccaaag gagcggttga acgttgtcaa caagatcgaa      2220
     acccataagg cgtgtccggc ttgcggcgtc gaaggtcact ctgcgaagga ctgtatacaa      2280
     ttcaaggatc tgagtttgga tgatcgctgg aaggtggtta aagcgaaaaa gctttgtcga      2340
     cgttgtttga ctccgcactc ccgttggccg tgtaacgctg aagcctgcgg ggtgaacggt      2400
     tgtcaaaaga gacaccatcg acttctgcat tacgatcacc caccggtaga acctcaacgt      2460
     accgagccga cgaacgccac ggtcacgatt caccgccagc caaatccgac gaccctgttc      2520
     cgaatcttgc cagtcacgct gtacggagcg cgggggcagg ttgacacgtt tgccttcttg      2580
     gatgacggat cttcggtgac ccttgtggag agatcgattg cgaacaagct gggaattgca      2640
     ggagaagatt cctctctctg tatccactgg accggtggca tcaagaaaaa catctcgaac      2700
     acacaactgg tagatctgga gatttccggg gtcaacaaca caaatcgact taaagcgaaa      2760
     gcagtttaca ccgtcgaagg attgggattg ccagaccagt cgatgaattt cgaggcgatg      2820
     gcggccaagt acgattactt gcgaagtctt cctgtacaaa acctgatgtc cgcggttcct      2880
     ggtgtactaa tcgggttgaa caacttacac ctgatggccc ccctgaagct acgtgaaggc      2940
     agagaaggcg aaccaatcgc cacgaaaacc cgtcttggct gggcagttta cggagctatc      3000
     ccggggcgtg aggcgccctt cctacaccgg cagatgcaca cccgcatagt catgaactat      3060
     ataactactt tatgacaaat agttactcaa ctatttatca aatggtctct actattcatt      3120
     aaattgtaac ccaactatat atgtacgata tatcaaacca tttattccat tcccaaaata      3180
     gttttggtcg attttactat atgagaaatt agttgttagg cagaaaacta tatgaggttt      3240
     tcatacatat gtaaatattt ttataaactt ggattttacg tcaaatagtc attgcccaaa      3300
     aaattgacta ttccctatat agtttctgaa aaactacttt accgacacta ctttgcggac      3360
     actttaaaaa agaccgcaaa aatgaaccct acaattgttg tgtaaactac ttcggatata      3420
     atcaaatttg atttttaagt tctatcgata gttggtgaat gtttaccacc attatatgtg      3480
     atgttattta cgttgctgcc gaactgctgc cgccttatcc gattgatcta tatctgttgg      3540
     tggttcccga cttgctttca cctctgctgt ccgtgctctt caagttccgg gaaaggcaag      3600
     tagcgattgg cggtgacatt gaggccatgt tccaccaggt tcggatacgc gaagcagatc      3660
     gaagtgccca gctgttctat tggcgtgatt cccctgaaaa gccgttggaa acaatggtaa      3720
     ccgacgttgc cattttcggt gccagctgtt cacccgcgca ttcccagtac gttaaaaatc      3780
     taaatgccac tcagcacgaa attgattacc ccagggcagc aaatgcaatc cggacaaagc      3840
     attatgtcga cgactacctg gatagcgtcg acacatcaga ggaggcggca gagattgcgc      3900
     tggaggttgc cgaagttcac tctagagccg ggttccacat ccgaaactgg gtctccaaca      3960
     acgctgcggt actgcagaga atcggagcgg ccaatccaac aacggtgaag cgtttcgtga      4020
     tggacaagga ttgtggtttt gagcgcctgc tgggtatggt gtggttgccg gaggaggaca      4080
     tgtttacgtt tcgcctgagt ttccgagaag accacgattt gttgctgtcc ggcgaagaaa      4140
     tccccaccaa gcagcagcta ctgagcgttg ttatgagcat ttacgatcca accgggttcc      4200
     tagcagcgtt cataattcac ggaaagatta taatccagga cgtttggagg tcaggcgtgg      4260
     attggaagaa caaaattcca gatgagctag tccaacgttg gaaacaatgg attgcgcttc      4320
     ttcccaagat cgaggacttg aaaatccctc gttgctactt ccctggttac cacccggaca      4380
     gcctgaggtc actagaactc catgttttcg tcgacgcgag tgagttggcc tattctgctg      4440
     tggcacactt ccgacttgtc gacagagggt ccgtgcggtg tgctttcgtg gcaagcaaaa      4500
     ccaaggtggc gccattggac ccgctatcca taccgcgtct cgaagcaaac gcgggtgtgc      4560
     tgggtgttcg tttgcgtaaa tccatagtga ccggtcattc tctacctatc acacgaactc      4620
     gtttctggac tgactcaaag accgtccttc aatggattag gtccaaggat cttcggcgct      4680
     accgtccgta cgtggccttc cggatgaacg aaatactgtc catgtcagcg gtcgcggagt      4740
     gggggtattg tccgtcccgt ctgaacgttg ctgatctcgc taccaagtgg ggaaaacaag      4800
     gtccacctct ggatatcaac agtccttttt accagagcca ggaatttgtg tacgataatc      4860
     catcggaatg gccggaaccg tgcgaagata tggtggagct ggcaccagaa gaattgagac      4920
     cgtcattcgt gtttgctcat ttcgttctga agccaacggt gaaatgggag aggttttcaa      4980
     agtgggagcg actattgcgt accatggcgt acgtccagcg atttatcgct cgcaagctga      5040
     accgcgagaa gaagccgtgg caagtcgacc tgacccgaga agagctacag aaagctgagc      5100
     agagtttgtg gcgtcttgca cagtctgagg agtatcctga cgaggtggcc actttgaatt      5160
     agaatcaacg agtcccagct gatcagcgag aatccctgga aaggtcaagc aacattgtta      5220
     aactctgtcc catgctggac gatgctggag tacttcgcgt aagtgggcgc atacaagctg      5280
     cagaatgtgt cggctacgaa accaaacacc cagtaattct tccacgagat cacccggtga      5340
     cgactttact gctggaatac taccatcggc ggttccagca ctcaaataat gaaactgtgg      5400
     tgaatgaaat tcggcagaat ttcagcattc ctaagctgcg ggtgctcgtg aggctcgtgt      5460
     ccaataactg caagtggtgc gaagtataca agtctactcc agttgtacca cagatggcac      5520
     cactcccgcg agctaggttg tccccattcc tgcgtccgtt tacattcacc ggagtggact      5580
     actttgggcc ctacctgatc aagacggggc gcagtattac aaaaagatgg gttgcgcttt      5640
     tcacctgcct gacgatcaga gctgtccatc ttgagatcgt tgcaaacctt tcgacggagt      5700
     cgttcaaaaa ggcagttcgg aggttcatcg cgcgtagagg ggcacctcaa gaaatctatt      5760
     cggaccgagg aaccaacttc caaggagcta gcagtgagtt aacgaaggaa ataagtttga      5820
     gcatcaacaa ggagctggcc agtacgttca ccgatgctca tactcagtgg cgtttcaatc      5880
     cccccgcggc accgcacatg ggaggctcgt gggagaggat ggtgcgttct gtaaaagctg      5940
     cgctaggagc gataccgttg gagcgcaaat tggacgagga atcgatggtg accatgttaa      6000
     cagaggcgga gcacatggtg aattcccgcc cacttacgtt tatccctcta gaaggcgccg      6060
     atcaggaatc gctcacgccg aatcattttt tactcatgag ttcaagcggg gttcaacagc      6120
     cggtgaagga tccgatgtgc gaaggcgcgg ctttgaggaa cagctggaac cagatccagc      6180
     acaccttaga tgagttttgg cgacggtggg taagggaata tttgccaact ttatcaagac      6240
     gatcgaaatg gttcgaggaa acgcggccgc tcagagaagg agatcttgtg gtcgtcgtag      6300
     atgagggaac gcgaaatcgc tggcaaagag gacgagtttt gcggacgtat ccgggcaagg      6360
     acgggcgtgt acgacgggta gatgtgcaaa cagctaaagg gattctacca agtcgcgcag      6420
     tcgccagatt ggcattgctg gatgtaggaa atgttggtga cgccgaagga acacttccgg      6480
     cgacacgagg gggagaa                                                     6497
//
ID   BEL-15_CQ-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   AAWU01030696;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_CQ_;
KW   BEL-15_CQ-I; BEL-15_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-444
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 184-184 (2011).
XX
DR   Genome; AAWU01030696; Positions   23062   23505.
XX
SQ   Sequence 444 BP; 138 A; 88 C; 88 G; 130 T; 0 other;
     tgttagtacc aatctgcgct gacgataccc cccgttgggg ctagagccac tggctataca        60
     tgagctttag tttctggtag ggagaagaac gtcagtgtga cttgtcaggg tcgtttgtta       120
     tcacagtgca atttcaccta atcgaacgca catacgcaat cgaaacagca gtagaattac       180
     taatctaaag gtatgaatta tttgcatttt tcttgaacta gctaattaga attaaaattg       240
     aatttataga ttctacctag gattgcgcga atcgaagagt tctttctgtt tagtggacga       300
     acttaaaaag ggcactaaat gtaaatatga aatttaccgt catgaagaca cagcaactaa       360
     taaatctccc tttttagctt tgagctgaac cacagtacga actaagtctg cttctttgat       420
     tggcccgaac aaacaccgct aaca                                              444
//
ID   BEL-15_DAn-I repbase;    DNA;    INV; 5547 BP.
XX
AC   AAPP01019267;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DAn_;
KW   BEL-15_DAn-LTR; BEL-15_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5547
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019267; Positions  131209  136755.
XX
CC   Positions [4571-5161] - Integrase core
CC   'ATTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..5545
FT                 /product="BEL-15_DAn-I_1p"
FT                 /translation="MMQHSPRRSPRLNEGQNIAPQVDGSVLAPQASQAGGR
FT                 GSEAPASSAQLAASGATRKPKVADLMDRIAELEKELERARSANMERTDPGM
FT                 SSEVGVGQPPFAIGLTVPNATSLYPPSWSGPQTVPCSQNCTTRINHASPFC
FT                 ATGTTVPAHGFGLQNEVAGGTSVRAPSPGDGAWATSIGGTARWAPRKLPEL
FT                 PTFGGKPEDWPIFYCAFTETTQAYGCTDLENNQRLLKALKDDARETVKSLL
FT                 IHPSNANAAVEQLRFRYGRPEQLIRSQLNSIRDVPAITEHNLGKLVAFATH
FT                 VSNLKAFLQSAKAEQHLGNPMLMEELVAKLPISKRVDWARHAATIQPYPTI
FT                 VDFSSWLMELANVVCLVADIDGREPRRRLLHASVDQEQDEQQESCRRNCPI
FT                 CEGLGQHAVRDCQRFIGATPTERWKLARRHRLCFMCLESGHMTGSCAASGE
FT                 CPVNGCRRKHHHLLHEENYEGFRRPPQRGGNWRGYNRQAAGPREGVQVNEG
FT                 AASSVDASATPETNLSCVDEDRERLLFRVLPVTLYGGGKQVDTYALLDEGS
FT                 SVTMVDNELVAELGVQGVRRQLNVQWFGGRATREPTNVVRLEISGAGKSSR
FT                 HVLRNVYAISNLSLPMQSLHRRDIRSVNKDAQLPMKPYVNAVPKLLIGLDH
FT                 GHLGLPLKTRRFASEPYAAATELGWVVFGPVEGRRDTPSPRSCLLATSLDD
FT                 NVERIVEDYFEIENFGVKAAPAAAASDDVRAQKILEDTTVRVGRRYQTGLL
FT                 WKTDNIVLPRSYDMAYNRLVNIERKIKRDGQFAQEYSRIVNDYVDKGYARR
FT                 LERQEIDSESDRTWYLPHFGVENPNKPGKIRLVFDAAARVGGVSLNSALSK
FT                 GPQHYKALASILFHFREGAVGVCSDIKEMFHQVLIRPEDRCAQRFLWRDGN
FT                 DQRDPDVYEMCVMTFGAACSPSAAHHVKTVNAKRFLDSDPRAVKAIVDYHY
FT                 VDDYVDSFATESEAIEVSSRVKKIHAEGGFELCKFSSSSPTVERMLGPSDH
FT                 AQSVGWGEAEQKILGMRWQPATDDFRFRVKYHKVAPVVSDGKRIATKREFL
FT                 SMVMSTFDPLGFLCCLMITAKLLLREVWRRKISWDEPLPAEMYNAFMDWRK
FT                 EMEKVERFRCPRHYFGSGLVKTVEMHVFVDASQSAFASVVYWRITYEDGDV
FT                 QVRFVCAKTKCAPMRTMTIPRLELQAAVLGTRLMDTVRQDHSVAIAETVLW
FT                 TDSKTVLRWIGSTHRRYKQFVGNRVAEILESTKVAQWRWLPSADNVADDAT
FT                 RAQRSVDLSEESRWLRGPAFLRRPAGSWPGTAPTDEADAEDEEEMPGEFVL
FT                 VGASDPFISLERFSSYRRLLRTTAWVLRFIRRCRGQRDELENYGLNVAECE
FT                 AAEDLLFRRAQREAFPDEVQAAEKDLDVAKGSDICGLAPYLDGNGILRAYG
FT                 RIDAALCIPYSARRPVILSHRHGLTEMIVRDAHVRMKHQNVDATMAEIRTR
FT                 FWITRLRRVLRSVISGCSECKLHRARPMPPIMGPLPDDRLDAYGWPFKSTG
FT                 LDYFGPLLVTVARHQEKRWVTLFTCLTTRAIHLELAHDLSTDSCILAIRNF
FT                 ICRRGPVHRLRSDNGRNFVGADREAKRFAEIFEPERIQSELSSKGIEWIFN
FT                 CPANPSEGGVWERMVQCVKRVLRHTVKEVAPKEHVLESFLIEAENIVNSRP
FT                 LTQLTVSADQEAPLTPNDLLKGAACPPDTPGLDGGLVKEGATRKQWRVARM
FT                 LRDRFWRRWVLEYLPTLTRREKWCRREKPIQRGDIVFVCDPAIPRRDWRKG
FT                 VVEETFAGTDGEVRRARVRIMDGDRTRWIMRPASKLAALDLSEEVLHGGG"
XX
SQ   Sequence 5547 BP; 1365 A; 1332 C; 1765 G; 1085 T; 0 other;
     gaagttttta ttcgcagtca ggcgactggc gacattgttt ggaacaacac cctactgaaa        60
     ggatcgatct agcctggacg gcatgatgca gcattcgccc agaaggagtc cccgactgaa       120
     cgagggacag aatatcgcac cgcaagtaga tggcagcgtt ttggccccgc aagcgtcgca       180
     agccggcggc cgaggcagtg aagccccggc gtcatcagcg cagctggcag catctggagc       240
     caccaggaaa ccgaaggtgg ccgacctcat ggataggatc gccgagttgg agaaggagtt       300
     ggaacgcgct cgcagcgcta atatggaacg cactgacccc ggtatgtcga gtgaggttgg       360
     ggtaggtcag ccgccatttg caatcggcct gaccgtaccc aacgcaacaa gtctttatcc       420
     gccatcctgg agcggacctc aaacggtacc gtgttcgcag aactgtacca cgaggataaa       480
     tcacgcatcg ccattttgcg ctaccggcac tactgttcca gcgcatggtt tcgggctgca       540
     aaatgaagtg gccggcggaa cgtcggtacg tgcaccttcc cctggagacg gtgcttgggc       600
     gacgagcatt ggaggaactg cacgctgggc gccacgaaag cttcctgaac tgcctacgtt       660
     cggagggaag ccagaggact ggcccatttt ctactgcgcg tttacggaga cgacgcaagc       720
     gtatggttgt acggacttgg agaacaacca aaggctactg aaggcgctaa aggacgacgc       780
     gcgtgagacg gtgaagtcat tgttgattca ccccagcaat gcgaatgcag cggtggagca       840
     gctgcgattc agatacggcc gaccggagca actaatacgc agccagctca acagcattcg       900
     agatgtgcct gcaattacgg agcacaacct gggaaagctc gtcgcattcg ccacccatgt       960
     cagcaacctc aaggctttcc tacaatcagc gaaggcggag cagcacctgg gtaaccctat      1020
     gctgatggaa gagcttgtgg ccaagctccc aataagcaaa cgagtggact gggcaaggca      1080
     cgctgcaacc attcagccct atccgacgat tgtggacttc agttcgtggt tgatggaact      1140
     agccaacgtg gtctgcttgg tggcggacat tgatggaagg gagccaaggc gtcgattgct      1200
     tcatgccagc gtcgaccaag agcaggacga gcaacaggag agctgccgca ggaattgtcc      1260
     aatttgtgaa ggccttggac aacatgcagt tcgggactgc caacgattca ttggagccac      1320
     acctacagag agatggaaac tcgcaagaag acatcgccta tgcttcatgt gcttggaaag      1380
     tgggcatatg actggatcct gcgctgcgtc aggagagtgc cccgtgaacg gatgcaggag      1440
     gaagcatcac catcttcttc atgaggaaaa ctatgaaggc ttcaggagac cgccacagcg      1500
     aggcggcaat tggagaggct acaaccggca ggcagccgga ccgagggaag gcgtccaagt      1560
     gaacgaagga gcagcctcat ccgtggatgc ctctgcgaca ccggagacaa atttgagctg      1620
     tgtcgacgag gaccgagaac gacttctgtt ccgtgtattg ccggtgacgc tatacggagg      1680
     tgggaagcag gtggatacgt acgctcttct cgatgaaggt tcttcggtga cgatggtcga      1740
     caacgagctg gttgcagagc taggcgtaca aggagtacgt cgtcagctaa acgttcagtg      1800
     gttcggaggc agggccacaa gagagcctac taacgtggta cgtctggaga tcagtggagc      1860
     aggcaagtcc tcccgacatg tgctgaggaa cgtctatgcc atttcgaact tgagtctgcc      1920
     gatgcagagc ctgcacagaa gggatattag gagcgtgaac aaggacgctc aattacctat      1980
     gaagccctac gtaaatgcag tgccgaagct gcttattggt ttggaccatg ggcatctagg      2040
     actgccgttg aaaacgaggc ggtttgccag cgagccgtac gcggccgcaa ccgaactagg      2100
     atgggttgtt tttgggcctg tagaaggacg acgagacacg ccatcaccga ggtcttgtct      2160
     gctagccacg tcgttggatg ataacgtgga acggatcgtc gaggactact tcgagatcga      2220
     gaacttcggt gtgaaggcgg cgccagcggc cgcagccagc gacgacgtga gggctcagaa      2280
     gatcctggag gacacaacgg tgcgagttgg ccgccgatat cagacgggat tattgtggaa      2340
     aactgataac attgtgctgc cacgtagcta tgatatggcg tacaatagat tggtcaacat      2400
     agaaaggaaa ataaagcgag atgggcagtt cgcccaagag tattcacgga ttgtcaatga      2460
     ttatgtcgac aagggatacg ctcggcgtct ggaacggcag gagatcgatt cggaaagcga      2520
     tagaacatgg tacttgccgc attttggagt ggagaatccc aacaagccag ggaagatccg      2580
     attagtattc gacgcagcgg cacgagttgg aggagtatcg ctgaattctg cgctgagcaa      2640
     ggggccgcaa cactataagg ccttggcatc tatcctcttc cattttaggg aaggtgccgt      2700
     cggagtctgc agcgacataa aggagatgtt tcaccaggtg ctgatccgac ccgaggatag      2760
     atgtgcgcaa cgctttctgt ggagagatgg gaatgaccaa cgggaccccg acgtctacga      2820
     gatgtgcgtg atgacctttg gagcagcatg ctcaccgagt gcggcgcatc atgtgaagac      2880
     agtgaatgcc aagcgattcc tggattcgga tcccagagca gtcaaggcca tcgtggacta      2940
     ccactacgtg gatgactatg tggacagctt cgccacagag agcgaggcga tcgaagtatc      3000
     tagcagagtg aagaagatac atgcggaagg cgggtttgag ctttgcaagt tctcgtccag      3060
     ttcgcctaca gtggagagga tgcttggacc cagtgatcac gcccagagtg ttggatgggg      3120
     tgaggccgag caaaagattt tgggaatgcg gtggcagcca gccacggacg acttcaggtt      3180
     tcgagtgaag taccacaaag tcgcccccgt cgtgtccgat gggaagagaa ttgccacgaa      3240
     aagggaattc ttgagcatgg tcatgtcaac gtttgacccc ttgggattcc tgtgttgtct      3300
     aatgataaca gcgaagttgt tgctgcgaga ggtctggagg aggaagatct catgggatga      3360
     accactaccg gctgagatgt acaacgcctt tatggactgg cgcaaagaga tggagaaagt      3420
     ggaacgtttt cggtgcccac gtcactactt tggatccggg ctggtgaaga ctgtcgagat      3480
     gcacgtattt gtggatgcga gtcagtcggc attcgcatca gtggtctact ggaggatcac      3540
     gtacgaggac ggcgacgtgc aagtgaggtt cgtgtgtgca aagacgaagt gtgcaccgat      3600
     gcgaacgatg acgattccac gattggagct gcaggcagca gttctaggaa cgaggttgat      3660
     ggacaccgtc agacaggacc atagtgtggc cattgcagag actgtgctat ggacggattc      3720
     gaagacagtg ctgcgttgga ttggcagcac acaccggcgc tacaagcagt tcgtagggaa      3780
     cagagtggcc gagattctgg agtcgacgaa ggtggcccaa tggagatggc taccatccgc      3840
     cgacaacgtg gcagatgatg caactcgagc gcaacgcagc gtggacctaa gcgaggagtc      3900
     acgctggtta agaggaccgg cattcctgag gagaccagcg ggcagctggc caggaactgc      3960
     acccaccgac gaagcggatg cagaagacga agaggagatg ccgggtgagt tcgtgcttgt      4020
     tggagcgagt gacccgttca tatcgctgga gaggttctca agctataggc gattgctgag      4080
     gactacggct tgggtcctaa ggttcatacg tcgatgccgt ggacaacgag atgagctgga      4140
     gaactacggc ctcaatgtag ctgagtgtga agcagctgag gacttgttat tccgtagagc      4200
     acaacgtgag gcgttccccg atgaggtgca agccgcagag aaggacttgg acgtcgctaa      4260
     aggaagcgac atatgtggac tggcgccata cctagatggc aacggaatcc tgcgagcgta      4320
     tggcaggatc gatgcggcgc tatgtattcc atacagcgcc aggaggccag tgatcctctc      4380
     ccaccggcat ggtctcacgg agatgattgt gcgcgacgcc cacgtgagga tgaagcatca      4440
     aaacgtggat gctacgatgg cggagatccg gaccaggttc tggattacga gactgcggag      4500
     agtgcttcgt agtgtgatct cgggatgcag cgagtgtaag ctgcacagag cacggccgat      4560
     gccgccgatt atgggacccc tgccagatga tcgtttggac gcctatggct ggccgtttaa      4620
     gagcacaggc ctcgactact ttgggccgct gttagtgacc gttgctcggc accaggagaa      4680
     gcggtgggtg accttgttca cgtgcctgac gaccagggcg attcatctgg aactggcaca      4740
     tgacctgtcg actgattcct gcatacttgc aatcaggaat ttcatctgcc gtcgagggcc      4800
     tgtacataga ctgcgcagcg acaatggcag gaacttcgtt ggagcagaca gagaggccaa      4860
     gagatttgcg gagatcttcg aacccgagag gatccagtcg gagctgtcaa gcaagggaat      4920
     tgagtggatc ttcaactgcc cagcgaaccc atcagagggt ggagtctggg agcgaatggt      4980
     gcagtgcgtg aagagggtgc tacgccacac agtgaaggaa gtggcgccga aggagcacgt      5040
     cctggagagt ttcctaatag aggcggagaa catcgttaat tctcgtccgc tcacccagtt      5100
     gaccgtgagt gcggaccagg aagcccctct cacgcccaac gatctcctca agggagcagc      5160
     ttgcccaccg gatacccccg gcctggatgg aggcctcgtc aaggaaggag ctacgcggaa      5220
     gcagtggcgc gtggcaagga tgttgaggga ccgattctgg aggaggtggg tcttggagta      5280
     cctacccacg ctgacacgga gagagaagtg gtgccgcaga gagaagccga tccaacgagg      5340
     agacatcgtc ttcgtttgcg atccagccat tccgcgtcga gactggcgga aaggcgtcgt      5400
     ggaggagacc tttgctggaa cggatggtga ggtcagacga gcccgcgtta ggatcatgga      5460
     tggggatcgg acccgctgga taatgcgccc cgcttcaaag ttggcggctt tggatttaag      5520
     tgaagaagtt cttcacggag gtgggga                                          5547
//
ID   BEL-15_DAn-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   AAPP01019267;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DAn_;
KW   BEL-15_DAn-LTR; BEL-15_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-303
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019267; Positions  130906  131208.
XX
SQ   Sequence 303 BP; 79 A; 53 C; 74 G; 97 T; 0 other;
     tgtcgcgggt cgattatcga tagttagtat ttaagtagaa ttttgttatc gtgcactcgt        60
     gaagagattg ggcacactag aataggaata ttggcgcgtg tggtgaattt gtgattgttg       120
     tcatagagtg tgggaggtta aactgcggta agctttgtaa tttatcatta tttcttaccc       180
     taatatgtaa cccccataga ataaaacata agttgtacgc acacattggc ttgtgttttg       240
     gaatcgggtt gccccatcgc cgccgtacat ttgtttaagg catctcccac acgagagacg       300
     aca                                                                     303
//
ID   BEL-15_DAzt-I repbase;    DNA;    INV; 5939 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5939
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 778-778 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           438..5762
FT                 /product="BEL-15_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTDPDSKHLPLQRLVRVQKDRHQSLKSTLQNFRKDSE
FT                 SRKTRIYFQKRMEQVEGLRKAFRETHEELLNLDGYDESDYCTKMFSSEFEE
FT                 RHMEVVCVLAEESEKRFPAAANLPTLSSERHTVTPEVHLKMPHMPVPKFSG
FT                 ACIDWPGFYDAFLSLIHENSTLSGVQRLHFLKEALPPGRDNDIRQMQLTDG
FT                 IYTVAWNMMVKRYNNSRLVFSHHMNAIYALPRLQKETAESIRTMLSTVNVC
FT                 LAAFRRIQALDGERNHWLAHYLASKLPKETHRAWEHHQGSSSTVPSFTELE
FT                 SFLNDRLFIMDAIENHSSSYDSNTSPGTSDSTKRVRVHNVQDRPKRSTVQC
FT                 LHCNGDHILRRCPAFLALDCYKRKDIANKAKLCLNCLSRSHTLSRCTSNKG
FT                 CQVCGQRHHTLLHFPVTSQGQPSNLSLPSTARPTTPQSLMPSTSNPVCPPG
FT                 QSHSESYRCFSATSSDTPKRQILLATARILIRNPINGLQAVINALIDQGSE
FT                 ATIVSEHVAQSLHLKRTGTRASIIGVGQGGGRRSKYMVNFQAFSNINPQFS
FT                 LDICSAYVLSTLTSYLPSESFSPKRWDHIQGLQLADPQYYRSKRVDLILGA
FT                 DLMAQIMLPETRLGGPNEPMAQNTHFGWILSGQTHGMEGTAQLRCHQISVE
FT                 TESLXRRFCEVEAVPERSIVTEEDRWCESFFQKTYVRRPDGRYVARLPFKT
FT                 YRDPSMVLGRSHQMALNRFLQMERKLSKAPERRKRYSDEIEEYFALGQISP
FT                 AVGTERSLTIRKSSDAHITSCVLPHHAVFKEENTSTKQRIVFDASARTSNG
FT                 RSLNDILCTGPALQNDMSSVILNWRKYRYVFTADIHKMYRCIDVHPDDAQF
FT                 QRILWRAEDGVINTYALSTLTFGTASAPYTAIRVIHQLAQDERGSFPKAEE
FT                 VLMNEIYVDDILSGDHTIEGAEVKRAQVEASIKSACMELRKWSSNDSRLLR
FT                 SIPAEHRCSQTLLSWDNSDPIKALGMYWLPNKDCFKFKINFEFTGSSTKRT
FT                 ILSSIARLFDPLGLIAPVIISGKLILKEVTMAKTERADGTRASLEWDEAVP
FT                 EPLAERWRAFRDCLQRIGDISIGRWIHYSPESVASMQLHAFCDGSSTAYAA
FT                 AVYLRVEHVDGSCYASLLMAKAKVTPSKPLTIPRTELSGAVLAIKLVKWIV
FT                 ASQRLSSLPIRTFYWTDATIVLHWLQGDVNRWKTFVANRVAFILDHSTPSE
FT                 WGHVSTTENPADCATRGLAPEELKDFELWWKGPGWLLHDQSSWPSKQVSEI
FT                 SLADPALEAKSDKIHVHHAVQGLSIIERFSTYTQAVRVIAYILRFKHNTCN
FT                 KGNRRTGPLSIEELDQALSSIVRTVQLESFPADLAAVRRSAPLPSRSKLVG
FT                 LSPFMAHGIARIKGRLRHSALPYDRRHPIILPGSHHFTTLVIKNSHCSTLH
FT                 GGAQLTLAHARQRFWIITGRQAVRRVIRKCMRCFRVRPPTSTQLMGDLPLH
FT                 RVNPPSRPFIATGVDYTGSIELKAARLRGSSVYKGYIAIFICLATKAVHLE
FT                 AVTGLTTEHFLQALDRFTGRRGLVKHLYSDNGTNFVGADNALKTVHAQLRK
FT                 DFDEMIAPKLASQRTIWHFIPPQSPNFGGLWEANVKALKHHLNRVMADRRL
FT                 TYEELSTVLITIESCLNSRPLCPLTADADDLEVLTPAHFLIGDTMFAPPEY
FT                 RPKTTSFREQFLIQQTMIRHFWKGWSRDWLAHLQQRPKWCQESENFKLNDL
FT                 VLVKDDRLPPSQWLLGRVLELHPGQDSLVRVVTLKTAQGQLKRSVSKLCRL
FT                 PIET"
XX
SQ   Sequence 5939 BP; 1509 A; 1513 C; 1488 G; 1425 T; 4 other;
     tggtggccca tggggggaac ccagccgcaa aacactaaca atttcataga catatttcga        60
     cgcagttaaa tcgcgggcga aagggtgcag tggaggaacg caacaaccgc aataacggtg       120
     caaccaagta acgtttcagt gcttgcttat tgcttgatgc cccgctctct tcgctaacgt       180
     ttcagtgctt gcgtattgct gtacgccccg ctctcttcgc ccacggctca tcgctccgct       240
     ctcttcgccc acggctcagc gctatcgctt tcttcgcctt catctcttcg ctaaatctca       300
     ttgcttgcgt ttggtgcggg taagtgaaga gaatttgagt gagttgtgtg cgagatcagt       360
     acctagaatt tctaaacgaa ttttatattg agttggtgtt gagttgtgca agcgttaaag       420
     tttaacgtaa tataaatatg acggatccag attcgaagca tctgccatta caaaggctgg       480
     tgagggtgca gaaagatcgt caccagtctt taaaatccac attgcagaac tttaggaaag       540
     attcagagtc gagaaagacg cgtatttact ttcagaagcg tatggaacaa gtggaaggct       600
     tgcggaaggc atttcgtgaa actcacgaag agcttctcaa tttggatggg tatgacgaat       660
     cggattactg taccaaaatg ttttcttccg agtttgagga gcgtcatatg gaagtggtct       720
     gtgtcctagc tgaggagtcc gagaagcggt ttccggcagc ggcaaacctg cccaccctct       780
     catccgaaag acacactgtc acgccagaag tccacttaaa aatgccacac atgccagtcc       840
     ccaaattttc tggtgcatgt attgattggc cagggtttta tgacgcgttc ttaagcttga       900
     tccatgaaaa ctctacttta agcggtgtgc aaaggttgca ctttctcaag gaggctctcc       960
     cgccaggtcg ggacaatgat attcgccaaa tgcagctcac ggacggtata tatacggtgg      1020
     cgtggaatat gatggtcaag agatacaaca actctcgcct agtattttcm catcatatga      1080
     acgctatcta tgctcttccc agattacaaa aggagactgc tgagtccata cggactatgc      1140
     tcagcacagt caatgtctgc ctggctgcgt tccgccgcat ccaagccttg gatggggagc      1200
     gcaaccactg gctggcccac tacttggcat cgaagctacc aaaggagact catagggcgt      1260
     gggagcatca tcaaggcagc agctccaccg taccctcgtt cacggaatta gaatcgtttc      1320
     tgaacgaccg gcttttcata atggatgcga tcgagaacca cagctcatcg tacgactcca      1380
     atacttcgcc gggcacgtca gactccacta agcgtgttcg agtgcataac gtgcaggacc      1440
     gaccaaagcg ctcaactgtc caatgccttc actgcaacgg cgaccacatc ctacgtcgtt      1500
     gtccagcctt tctggccctg gactgctaca agcgcaaaga cattgcgaac aaagcaaagt      1560
     tgtgtcttaa ttgcttaagc cgatcccaca cactttcgcg ctgcaccagc aataagggtt      1620
     gtcaagtgtg cgggcaacgg caccatacgt tgctacattt tcccgtcact tcacaaggtc      1680
     aaccctcgaa cctgtcgcta ccgagtactg cccggcctac gacaccgcag tcactcatgc      1740
     cttcgactag caacccagtt tgcccacctg gtcaatcaca cagtgagtcc tatcgttgct      1800
     tttcagccac ttcgtcggat actcctaaga ggcagattct cctcgcgacc gcgcgtatcc      1860
     tcatacggaa tccgatcaat ggacttcaag ctgtcatcaa tgctctcatc gaccagggat      1920
     ccgaggcaac aattgtatcc gagcatgtgg cacaatccct tcatctaaaa agaacgggta      1980
     cccgcgcctc cattattggg gtgggtcagg ggggtggtcg ccgcagcaag tatatggtga      2040
     attttcaagc gtttagcaat attaatccac agttttcttt agatatctgc tcggcatatg      2100
     tgctcagtac attaacgtcg tatctaccta gtgaaagttt ctctccgaag cgctgggatc      2160
     acatccaggg actccagctg gcagaccctc aatactaccg atcaaaacga gttgatctaa      2220
     tattgggagc tgatttgatg gcacaaatca tgttgcctga aaccaggctt ggagggccta      2280
     acgaacctat ggcgcagaac acgcattttg gttggatatt gtcaggacaa acgcatggga      2340
     tggaaggaac tgctcagctg cgctgccatc aaatatctgt agagacggaa tcgctmytwa      2400
     ggagattttg tgaggtcgaa gccgtaccgg aacgatccat agtcaccgaa gaggatcggt      2460
     ggtgtgaatc gtttttccag aagacatatg tgcgcaggcc agatggacgc tacgtagcaa      2520
     ggcttccgtt caaaacatat cgggatccaa gcatggttct aggaagatct catcaaatgg      2580
     cactcaatcg ttttttgcag atggaaagga agctgtctaa ggcccctgaa cgtcggaagc      2640
     gatatagcga cgaaatagag gagtacttcg cattgggtca gatcagtccg gcggtgggca      2700
     ctgaacgcag tttgaccatt cgaaagtcca gcgatgcaca catcacgtcg tgcgtgctgc      2760
     cacaccacgc cgtctttaag gaggagaata cgtccacaaa gcaacgtata gttttcgatg      2820
     cttctgccag gactagcaat ggacgctcct tgaacgatat actttgcaca ggacctgcgc      2880
     tacaaaacga catgtcttcg gtgatcctaa attggcggaa atatcgctat gtattcacag      2940
     cggatataca taaaatgtat cgttgcattg acgttcaccc tgacgacgcg caatttcagc      3000
     ggattttatg gcgggcggag gatggagtca tcaacacgta cgcattgtcg acgctgacgt      3060
     ttggaacagc ctcggcgcca tacacggcta tcagagtcat tcatcaattg gctcaagatg      3120
     aacgaggttc gttcccgaag gctgaagaag tcctcatgaa cgagatatac gttgacgata      3180
     tcttatcggg cgatcacacc atagaagggg cagaggtaaa aagggctcaa gttgaggcgt      3240
     ctataaaatc cgcctgcatg gaattgcgca aatggtccag caacgattca aggctattgc      3300
     gctcgatccc ggcagagcat cgctgcagtc aaacgctatt gagctgggat aacagtgatc      3360
     ccataaaggc gttaggaatg tactggctcc ccaacaagga ctgttttaag tttaaaatca      3420
     actttgaatt tacaggaagt tctaccaaaa ggacgatctt atccagcatc gccaggctct      3480
     ttgacccgct agggttaatc gcgcctgtca tcatctcggg gaagctgatc ctgaaggagg      3540
     taaccatggc caagactgag cgtgcagacg gtacaagggc gtccctggag tgggatgaag      3600
     ctgtccccga acctctggca gagcgttgga gagcatttcg agactgcttg cagaggatcg      3660
     gcgatatcag cattggtcga tggattcatt actcaccgga atctgttgcg tcgatgcaac      3720
     tacatgcgtt ttgtgatggg tcctcaacag catatgcagc ggccgtttat ctccgagtgg      3780
     aacatgtcga cgggtcatgt tacgcatccc tgcttatggc caaagcaaag gtcactccct      3840
     ctaagccttt gaccatcccg cgtacagagc taagtggtgc ggtattggcc atcaagctcg      3900
     tgaagtggat agtggcttct cagcggctat cgtcgcttcc gattaggaca ttttattgga      3960
     ccgatgctac gattgtccta cattggttgc agggtgacgt taataggtgg aaaacattcg      4020
     tcgctaacag agttgccttc atattggacc attctacacc aagtgaatgg ggtcacgtga      4080
     gcacgacaga gaacccagca gactgtgcga cgagaggact cgccccagag gagctgaagg      4140
     atttcgagtt gtggtggaag ggaccaggtt ggctcctgca cgatcagtcc tcgtggccgt      4200
     ccaaacaggt gtcggagatc tccttggctg accccgcgtt ggaagccaaa tcggataaaa      4260
     ttcacgtaca ccatgctgtc cagggactct caatcataga gagattttcc acgtatactc      4320
     aagctgtaag agtcattgcc tacattctgc gattcaagca caacacgtgt aacaagggaa      4380
     accggcgcac aggtcccttg agcattgagg agctagacca agctctgtct agtattgtac      4440
     gcaccgtcca acttgaatct ttcccggccg atctagccgc cgtgagaagg tccgcgccat      4500
     taccatccag gagcaagctc gtaggcctat caccgttcat ggcccacggc atcgcaagga      4560
     taaagggacg tttgcgacac tcagctttgc catacgatcg acgtcatcca atcattctgc      4620
     cgggctccca tcacttcaca acattggtca tcaagaactc tcattgttcg acgctacacg      4680
     gaggtgcgca gttgactttg gcgcacgcac gccaacggtt ctggatcatc actgggaggc      4740
     aggcagttcg tcgagtgatc aggaaatgta tgcgatgttt ccgagtgcga ccgccaacgt      4800
     ccacccagct tatgggagat ctgcctcttc atcgagtcaa tccgccgagt cgcccattca      4860
     tcgcgaccgg agtagattat accggctcca tagagctcaa agcagcgcgt ctacgaggca      4920
     gtagtgtgta caagggttac attgctatct tcatttgtct ggcgacaaag gctgtgcact      4980
     tggaagcggt gacaggcctc actaccgagc atttcttgca ggctctggac aggtttacag      5040
     gtcggcgagg gttagtcaaa cacctatata gcgacaacgg taccaacttt gtcggtgcgg      5100
     acaatgcttt gaagacggtg catgctcagc ttcgaaagga ttttgatgag atgatcgcac      5160
     ccaagttggc atcccagcga acaatttggc attttattcc tccccaatcg cccaactttg      5220
     gtggattgtg ggaggccaat gtaaaggctc tgaaacacca cttaaatcga gtcatggcgg      5280
     atcggcggct cacttacgaa gagctatcaa cggtgctcat tactatcgag tcatgtctca      5340
     attcgcgccc tctgtgccct ctcacggctg acgctgacga cttggaggtg ctgactccag      5400
     cacattttct gattggagac acaatgtttg ctccgccgga gtatcggccc aaaaccacgt      5460
     cgttccggga gcagttcctc atccagcaaa caatgattcg ccacttctgg aagggttgga      5520
     gtcgcgactg gctagctcat ttgcagcaac ggccaaagtg gtgccaggaa tcagaaaact      5580
     tcaagctcaa cgacctcgtg ctagttaagg atgatagact tccgccgtca caatggctgc      5640
     tagggcgtgt actcgagctt cacccaggac aggactcatt ggttcgcgtg gttacactta      5700
     aaacagcgca agggcagttg aagcgatcgg tatcaaaact atgtcgactg ccgattgaga      5760
     cataatcgca ttctcaatac gcacactcaa ataaccacct ctaatcttat aaacatacac      5820
     tggcgcacac atcttgctct tatccctctt ttctagaacc ctcaaccaag aagttttagc      5880
     ggattgtcgc cgcgggacca aggaaatctt aatgctagat ctagcattgg cgggcggca       5939
//
ID   BEL-15_DAzt-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-328
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 783-783 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 328 BP; 84 A; 87 C; 71 G; 85 T; 1 other;
     tgttcggttt tgcatcgctg gtcccaaggt gccaaactct ctccaatcta ggctctctcg        60
     gaacgttggc gttcgkgcgt acccacagca tagggcttgc gagcgacgtg cgtgggagag       120
     agagtcagtc tgcttgcgaa tgtcaccgag cacagcatca caccgatcta gaaaacgccg       180
     ctacctaccg ctgttctcaa acccaaatca ttgcaattaa attaatataa acaaaacatt       240
     acgaaagtgt ttgcactggc tacgggaacc tctcttcatt gtcctctgta tattccgctt       300
     atatatattc aggggacaca actgttca                                          328
//
ID   BEL-15_DEl-I repbase;    DNA;    INV; 3950 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3950
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 445-445 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(84..293,230..1018,816..1217,937..1701,
FT                 1662..1802,1806..1955,1942..2106,2045..2194,
FT                 2280..2465,2363..2722,2677..3024,2915..3286,
FT                 3204..3431,3486..3881)
FT                 /product="BEL-15_DEl-I_1p"
FT                 /note="DUF1759, DUF3758 and reverse
FT                 transcriptase."
FT                 /translation="LDQICSSNGDSVILHVVLNAVLKRLSCKHIHTYGQTS
FT                 MRYWRLHIQSAEEVFGQITLSSFLQNLKKNVESRSFRSDNVKFIFAKFKKK
FT                 CRILICLCCHQFLRRLTPDKIGSISVIDLDVRLHLINQIKTTYNRNQDLLE
FT                 SLDFNQIGQPCRDEFDEMALLLELRLRGHIQKRKGEHPTNSTMRNDDSSSF
FT                 MVCNRSRVPELKLPSFSGGYTEYADFMSMFYTIIDKDPELTNIEKLQHLRS
FT                 CLLSPALDAIKSLDISSANYPVALDLLNKRYSNKRLVFQSHIKEILGLKRV
FT                 DSSAANKLREFSDKINSHMRALDSLGSAQEIGQNTLGEGILICLINGILIN
FT                 VLFSSLTSRRYLVSKGWILRRQINFGSFRIKSTHTCGLWIRWDQLRRLDKI
FT                 PSAKEFYEFLENRCRKLENLQHSMGSYNSNCQVGTNSRSSSINSRRSFVAY
FT                 QSNNLPCAFCNASEHPILYAYVNQLTHAGFGFVGISSGDWTKYPRRRNSMN
FT                 FWRIGAENWRTFNIPWGVITQIVRWEQIVEVALLIAGDRLLPTRVTIYHVH
FT                 FAMRLSIPFSMPTFEHLSPSCGMLRSRSRLYASTSGNCRVCGNRHHTLLHF
FT                 YTNSSQLEIETDSAIISEVNASSSQPTTSLVVQGPASDITLLATAVVLVKS
FT                 RSGLFIPCRALLDSGSQLHLLTSRFAKRTRSASLVSGLGETRVLTEGYTVD
FT                 ICLKSQASDYSALLSALIKPRTLFGVIICTHQAPNIENWNIPANVQLADPF
FT                 FHKPQRIDLLIGKKTFKENSNESVSIRTKEELDCERHFADTFVRLTTGEYS
FT                 VNLPFSSKSINLGASAPAQAHRRFLNLEHKLHRQPHLKEQYSHLFTSIWFL
FT                 IIPTSLRYQGGQFNNQTTCGFSFPHHCVIKEDSSTTKLRVVFDGSAVASSG
FT                 QSLNDVLLAGPVIQPKLFEFLLPMHEIHLLTIYYFHCYRYSNSSKPSKRSI
FT                 LPTVLPISTELFTLSPSLLRELVTCCARSQEAFHPTNCVANFYGAFHIVSK
FT                 SVEGISHLLCSKSRVAPLKTITVPKLELSGALLLSQLMSTVKQIGCFDGRY
FT                 FCWSDSTVVLPWIKEEPSKLMYFSPTVRHLFRNNRRHGTAVYFHRSQSCQA
FT                 AWNGGIFPQIAILLTSFLGEQLLIRFFNPDFGPTFLSQSQDNWPASCFLQK
FT                 PINELRRNVLLVNSAYLDYTTNCKYINSFPAMQRVFGYVSKCICRRRHYGL
FT                 CVIRRSTPNNFEIHFLPCNEFLDTSQNVFAVVVIMGSALYDAQHPIILNKH
FT                 HPITVAIIQSFHERQLHAGPRALLSSLRLQFWPIGGSKSVARAVSKCIKCF
FT                 RAQPKLIEHVMGRLPKERLAGSRAXEVSVAAGXQLNTSWVGSRRNDLRDPE
FT                 HXKLVWQQAXSKVLHLSFXLLXNXGXAFRASSRPNNQLVSRCAKAIHCYAR
FT                 QVYSNLERVLSDTQSAAVSQFCLAENIDWRFIPPRSPHFGGLWEAAVISHR
FT                 FQELRTLECPIFAIVNSLPLVSISESPGALDVLTPAHFLLCVPAEAEPDLS
FT                 ALSYNRLDGWQCVTHLQQIFWARWREEYLTLMSGPLQG"
XX
SQ   Sequence 3950 BP; 1056 A; 876 C; 835 G; 1175 T; 8 other;
     aaagtttaat ttgaaaataa ttttggagcc caagcttaaa tgttktgcaa taaagttgat        60
     aacakccagt gatttgcaaa taattggatc aaatttgttc atcaaacgga gactccgtta       120
     ttttgcacgt cgtccttaac gctgttttga aacggcttag ctgcaaacac atacatacat       180
     acggacaaac ttcaatgcgt tattggcgcc tgcacataca gtctgctgaa gaagttttcg       240
     gtcagataac gttaagttca tttttgcaaa atttaaaaaa aaatgtcgaa tcctgatttg       300
     cctctgctgc catcagttcc tgagaagatt aactcctgac aaaattggat cgatcagtgt       360
     tatcgatttg gatgtccgct tacacctaat taatcaaatt aaaaccactt ataaccgtaa       420
     tcaagactta ctagagtctc tcgattttaa tcaaattggc caaccctgtc gagatgaatt       480
     tgatgaaatg gcgttacttc ttgagttgcg attgagaggt cacattcaaa aacggaaagg       540
     tgaacatcca acgaactcta ccatgcgcaa cgacgattca tcatccttta tggtgtgtaa       600
     tcgctctcgt gttcccgaac taaagttgcc atctttttct ggaggatata ctgagtacgc       660
     agatttcatg tcgatgttct acacaatcat tgataaggac cccgagttaa ccaacatcga       720
     aaagctgcag cacttacgtt cctgtttact tagcccagcg ctggatgcca taaagtcgtt       780
     agatatatcg tcagccaact atccagtggc tttagatctg cttaataaac ggtattctaa       840
     taaacgtctt gttttccagt ctcacatcaa ggagatactt ggtctcaaaa gggtggattc       900
     ttcggcggca aataaacttc gggagttttc ggataaaatc aactcacaca tgcgggcttt       960
     ggattcgttg ggatcagctc aggagattgg acaaaatacc ctcggcgaag gaattctatg      1020
     aatttttgga gaatcggtgc cgaaaactgg agaaccttca acattccatg gggagttata      1080
     actcaaattg tcaggtggga acaaatagta gaagtagctc tattaatagc aggagatcgt      1140
     ttgttgccta ccagagtaac aatctaccat gtgcattttg caatgcgtct gagcatccca      1200
     ttctctatgc ctacgtttga acatttatct ccctcttgcg gcatgctgag atcaagaagc      1260
     cgtctctatg cttctacaag cggaaattgc cgcgtttgtg gaaataggca ccacacatta      1320
     ttgcattttt atacaaactc ttcgcagcta gaaattgaaa ctgattctgc cattatttct      1380
     gaagttaacg cctccagttc tcagccaact acctctctag tcgttcaagg tccagcttct      1440
     gatattacgc tattggccac tgctgttgta ctcgtaaaaa gccgttccgg tttattcatt      1500
     ccatgcaggg cattgcttga ttcaggctcc cagctgcatc ttctaacttc tcgtttcgct      1560
     aaaaggactc gctcagcatc tctggtttcg ggactcggtg agacaagggt tctaactgaa      1620
     ggatataccg tcgatatttg cttaaaatct caggcatctg actattcggc gttattatct      1680
     gcactcatca agccccgaac atagagaatt ggaatattcc ggcaaatgtc caactagcgg      1740
     atcccttttt tcacaagcct caacgaatag acctactaat tggaaaaaaa acgtttaagg      1800
     agtagaattc aaatgaatca gtttccatca gaacaaagga ggagcttgat tgcgaaaggc      1860
     attttgccga cacgtttgtc agattaacta caggtgaata ctcggttaat ctgccattta      1920
     gttccaaatc cattaactta ggcgcaagcg caccgtagat ttttgaatct ggagcacaaa      1980
     ctacatcgtc aacctcacct taaagagcag tattcacatt tattcacgag tatttggttc      2040
     ttaatcattc ccacatcact gcgttatcaa ggaggacagt tcaacaacca aactacgtgt      2100
     ggtttttgac ggatcggctg tagcttcatc tggtcaatcc cttaatgatg tgctgttggc      2160
     aggcccagtt attcaaccaa aactctttga attttgatta ggtttcgttc atacaaagtt      2220
     gctcttactg gagacatcag caagatgtat cggtgtgtcc gtatgggtgc tcctgataac      2280
     ttctaccgat gcatgagatc catctactga ctatttatta ttttcattgt tatcgctact      2340
     ccaatagttc aaaacccagt aagcgttcca tcctaccaac tgtgttgcca atttctacgg      2400
     agcttttcac attgtctcca agtctgttga gggaattagt cacttgttgt gctcgaagtc      2460
     aagagtagca ccgttaaaaa cgattaccgt gccaaagctg gaattgtctg gagcgttatt      2520
     gttgtctcaa ctaatgagta cagttaagca gattggatgt ttcgatggaa ggtacttttg      2580
     ttggagtgat tcaaccgtgg ttttgccttg gattaaagag gaaccttcaa aattaatgta      2640
     tttctcgcca accgtgcggc atctattcag gaataacagg cggcatggaa cggcggtata      2700
     tttccacaga tcgcaatcct gctgacatcc tttctagggg agcaactgct gatcaggttc      2760
     ttcaatccag actttggtcc gacctttctt agtcaaagtc aagataattg gcctgcctct      2820
     tgtttcctcc aaaaaccaat taatgagcta cgaaggaacg tattgctggt caattctgct      2880
     tatttggatt acacaacgaa ctgcaagtat ataaattcat ttcctgccat gcaacgagtt      2940
     tttggatacg tctcaaaatg tatttgccgt cgtcgtcatt atgggctctg cgttatacga      3000
     cgctcaacac ccaataattt tgaataagca ccatcctatc acagtggcta tcattcaaag      3060
     ctttcatgaa cggcagctgc acgccggacc ccgtgccttg ctttccagtt tgcgcttgca      3120
     gttttggccc attggagggt cgaagagcgt cgcaagagct gtcagtaaat gcattaaatg      3180
     cttccgggct cagccaaaat tgattgaaca cgtcatgggt aggctcccga aggaacgact      3240
     tgcgggatcc cgagcatktg aagttagtgt ggcagcaggc cktcagtaaa gtgctacatc      3300
     tcagttttka tttgcttwac aacmaaggcw gtgcatttag agcttcttca agacctaaca      3360
     accagctcgt ttctcgttgc gctaaagcga ttcattgcta cgccaggcaa gtctattcaa      3420
     atttggagcg ataacgccac ttacttgtag gcgcaaaaaa tgaattgcgg gagctagttc      3480
     gatgagtttt gagcgacact caatctgctg ctgttagtca attttgtctg gctgaaaata      3540
     ttgactggcg cttcattcct cctcgatcgc cccattttgg aggtttgtgg gaggcagcag      3600
     taatatcgca cagatttcag gaactgcgga ctttagagtg tccgattttt gcaatcgtca      3660
     attctctgcc gttagtttcg atttcagaaa gccctggcgc tctagacgtt ttgactcctg      3720
     ctcactttct tctttgtgtg cctgctgagg cggagcctga tttaagtgcc ttaagctata      3780
     atcgtttgga cggctggcaa tgtgtgaccc atcttcagca aatcttttgg gctcgttggc      3840
     gtgaggaata tctgaccctg atgtctggtc cccttcaagg atgagaacct tccaccaatg      3900
     cgttggtcgc tggcccgagt ggtcggccta attccaggaa aggatggcgt                 3950
//
ID   BEL-15_DP-I repbase;    DNA;    INV; 6145 BP.
XX
AC   super_2;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DP_;
KW   BEL-15_DP-LTR; BEL-15_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6145
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1485-1485 (2012).
XX
DR   Genome; super_2; Positions  199446  205590.
XX
CC   'GGAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           961..2793
FT                 /product="BEL-15_DP-I_1p"
FT                 /translation="MPGKRRGMSRQSAEVDDVDSLDTLRKLSAVKKDINRT
FT                 WSLLKDKQSSFSKAQLECRMEILESYIERAFQFQVEIEDVNPDLASRAELE
FT                 DLCIEAKSTLKSMSAKFEQRTANESVLNTTIATNRHLPPVKLPKFSGDYTE
FT                 YKHFIGLFSSIVDSDPTLSNVEKFNHLLTCLEKEALGVVQAYPVSEQNYPK
FT                 ALSALMKVYDNDCLIFLNSIARLFELQSMQGPSASGLRSLLDTASAIYESL
FT                 LSVGDNKQISDALLIHIVMSKVDQKTRFRWEENLDYQSIPYWTDCVSSLNK
FT                 RYQHLSAEETNSGQSRGKKTSQDSKSKQSGKTSLTVAQAKPSQDQKCSFCK
FT                 ATDHFITSCSDFAAASVATRFQFANGVPLCINCLRKGHIVSKCKSSHCRVC
FT                 SKPHHTLLHRYTTDSSTSQAALDNPPAILNARPLVSNHAMAHDNDQVLLAT
FT                 AVVDIKGSSSQHQPARVLLDSGSQVNFITDELAKSQQLKRTRKHISLLGIG
FT                 KSSLSAYQVVQTTICSRIHPFEMVADFVILKSISSYHPEKAVPPDSLMDAT
FT                 ESYPLADPVFYKPQKVDLLLGADAFFDILSNGQVKQGREALTLQNTVFGWV
FT                 VSGRCKSKGPQAT"
FT   CDS           4519..5766
FT                 /product="BEL-15_DP-I_2p"
FT                 /translation="MDWPQNRHLRLTEADASLEKKKVATSLVAADGEHNPI
FT                 LTLIENSSSYMIVVGTIAYIRRFINKRKGVIWSSTFPSSEELGAAFLAAVE
FT                 AVQRDAFSQEIDKIKKSSKLQASLQKLTPFISEEQVGSCSFSLVRVGGRLL
FT                 NAPLAHNAKFPLLMPKNCRFVTLYLSYLHRANCHAGPRALVGFLRQSMWLI
FT                 NARRECSAIVRKCVHCFHYKPKLLSQIMGNLPADRLRGNRPFEISGVDLFG
FT                 PVRVSLGIRGKQPLKMYIAVFVCFASKAVHLDIVKDLTSNTFILCLSRFVG
FT                 RRGPLVKLYCDNATNFVGAARMLKERMDAFNAKDEDLKAYAPAHSFSVEFI
FT                 PPRAPHIGGLWESAVKSAKNLLLRAVGSAVLKEDELHTVLVDVEAVLNSRP
FT                 LVVDSGSPNEGEVVTPAQSAER"
XX
SQ   Sequence 6145 BP; 1684 A; 1397 C; 1414 G; 1650 T; 0 other;
     tttttggcgc ccccgggtgg acactgattt tctggattgg acagaagttg gattggatta        60
     atcttggcgc ttcgttggat atccccattg gatatcatcc ctcgctcgtt gctgttgctg       120
     ttcctgcagt tgtcattggt ggcccgctgg acttcaaact tagctactct tgagagctgc       180
     tcgtgggtat tcctggttgg tatgaacttg tgggagggaa tgcatcggtg ttcaaacaac       240
     cctcaaccag tgccacaggt aaatcaaagt gcccaattgt ttcatcaaaa aatataaata       300
     actacgtata aaaaaggcct gtgaataaat tattcaataa aagtgattcg gccaggtatc       360
     tgtacgtaca cacattcaaa gttatttgat tatacagtga gcgatcactg tacttgtggt       420
     caacgacatt tccaaaaaga gccgacaagc aaaggagaaa cggcaatagt ttcgcgcgca       480
     agctctaacc gctgcgcatc attcccccct cgcccgtctt cgtcataaat tttcgtttct       540
     gctttgcgcg aacgggttct tgctggacgc tcttcgtttt acagtgcagc tgcacttttg       600
     tgctctctca ttcagcgctc gcttgctctt tatcgtttcg tgttctctcc ttgtctccat       660
     gtagcactca catacataca ttacacatac cattacttgt ggtttagtcg gtcggtcgct       720
     aaagcagcat acgcatatac gcgcatttaa gttgcgtttc ggtgaactac aagctcgact       780
     cgaaatcgaa agcgttggct tgtaggcatt ttggcgatca tctctctctc tctctcgtag       840
     tctctagcac ggtaacagca ttgggctgtt agcaggcaga aaaaatttgt gagtgtaatt       900
     gctgagtgtg acagtgggac aagtgccatt tttgagaaac aaaaatttta tagaactaaa       960
     atgcctggaa aacggcgagg aatgtctaga caatcggcag aggttgacga tgtggattcg      1020
     ttagacactc ttcgcaagct gagtgcagtt aagaaagata tcaatcgtac atggagcctt      1080
     cttaaagata aacagtcttc cttttcaaag gcacaattgg agtgccgcat ggaaatatta      1140
     gagtcataca ttgaacgggc tttccaattc caagtagaaa ttgaggatgt caacccagat      1200
     ttagcttctc gagccgagct tgaggattta tgtattgagg ctaaatccac gctcaagtcc      1260
     atgtctgcta aatttgagca acggacagca aatgagtcgg tattaaatac gacaattgct      1320
     acaaatagac atttgccgcc agtaaaattg cccaaattca gtggcgatta taccgagtat      1380
     aaacatttta tcggcctatt tagtagcata gtggatagcg atcccacatt aagcaatgtg      1440
     gagaaattta atcatttatt gacttgctta gagaaagaag cgctaggagt agtacaggct      1500
     tatccagtgt ccgaacaaaa ctatccgaag gcccttagtg ccttaatgaa ggtatacgat      1560
     aatgattgtt taatattctt aaatagtata gcccgtctgt tcgagttgca aagcatgcaa      1620
     ggtccgtctg catctgggct gagatccctt cttgacacag cttccgctat ttacgagtcg      1680
     ctattgtctg taggagataa taaacaaatt tcggatgctt tactgataca cattgttatg      1740
     tccaaggtag atcaaaaaac ccgctttcga tgggaagaga atctggatta tcaatccatt      1800
     ccatattgga cagactgtgt atcttcgctt aacaaacgct accaacattt atctgcagaa      1860
     gagacgaatt cagggcaatc tagaggaaaa aagacaagtc aggattcaaa gagcaagcaa      1920
     tctggaaaga cttcgttgac tgtggctcag gccaaacctt ctcaagatca gaaatgttca      1980
     ttttgcaagg caactgatca tttcatcact tcttgctcgg atttcgctgc agcttcagtc      2040
     gcaacccgct tccaatttgc aaatggagtt ccgctatgca ttaattgcct acgcaaagga      2100
     cacattgtgt caaagtgcaa atcgtcacat tgcagagtct gttccaaacc gcatcatact      2160
     ttgttacatc gttacacaac tgactcatcc acaagtcaag ctgcgttgga caatccgcct      2220
     gcaattctaa acgcacgtcc actagtttcg aatcatgcaa tggcacacga caatgaccaa      2280
     gtacttttag ccacagcagt tgttgacatt aaaggcagct caagccaaca tcagccagcc      2340
     agagtattgt tggactctgg ttctcaagtg aattttataa ccgatgaatt ggcaaaaagt      2400
     cagcagttaa agagaactag aaagcatatt agtttgttag gtattggaaa atccagctta      2460
     tcggcatacc aagttgtgca aaccacaatc tgctctcgca tacacccatt cgaaatggtg      2520
     gcagatttcg tgattttgaa atcgatttcc tcgtaccatc cagaaaaggc ggttccgcct      2580
     gattccttaa tggatgctac tgagagctat ccactggctg atccagtctt ttacaagcca      2640
     caaaaggttg atttgctatt aggtgcagac gcctttttcg atatcttaag taatggtcaa      2700
     gtaaaacagg gcagagaggc actaacctta caaaacactg tttttgggtg ggtggtgtct      2760
     ggacgttgca agtccaaagg ccctcaagcc acataaactt gctctatggt gagcacagtt      2820
     caagaagcct gcccgctcga cagcttggtc aaacgtttct gggagttgga aaatgttcca      2880
     aatgcatcca tagaaagact gtataccccc gaagaaacta tgtgtgaaaa atcctttatc      2940
     gacactatca cacgtctacc ctccggtcga ttgcaagttt ctttgccatt taagtctagc      3000
     ccgacatctc tcggttcgtc gtttgagaca gccagaagac gatttttgtc tttagaaagg      3060
     cgattatgcc aaaaacctgc cataaaatcg atgtttatgg actttatgga ggaatacttg      3120
     tcgttaggcc atatgactgc aatggaaaac tcaatcccgg cagagccgca ttgtttcatc      3180
     ccgtatcaat gcgtggaacg accacaaagt acatccacta agcttaaagt agtgttcgat      3240
     gcgtcgtgca aaacaacgag tcaagtctcg ctcaatgatt tactcatggt gggagcaacc      3300
     atccagccgt gcctatacgc aacgttgtta agatttcggt gtcgcaaatt cgctcttaca      3360
     gcagacatta caaaaatgta ccgtcaagtc gaacttgatg aggcgcatcg caaattccaa      3420
     ttaattattt ggagacgtgc aagttcggat cccttgcaag tgtttcgtct aaatacggta      3480
     acttatggca cggccagcgc accatttctt gctgtcaggt gcttgaagta tctaagcgaa      3540
     actcatttaa attcgcatcc acttggctca aagtctcttg cttccgattt ctatgttgac      3600
     gatcttctta caggcgcttc aacagctagt tgaaatccta gagccagccg gatttgtgct      3660
     gacgaagtgg actgctaatt gtcaactagg tgacagtcag aaagagaatc tggttatttc      3720
     gagtggagat cagcaagatt gcaaaactct tggactgatg tggaacccac aggcagacat      3780
     tttcaagtac tgtctgaaac caatagtctc gtccgaaacc acaaccaaga gagtaatgtt      3840
     atccgtcata tccagtcttt tcgatccctt gggtctgcta tgtccggtga ttactaatgc      3900
     aaaaatcttc ttgcaggaaa tttggctttt gagccttggt tgggacgatc ccattctctt      3960
     aaagttgcaa caaagatggg agtcgatggt ttcggacatg caaaggttgc atgaagtcac      4020
     cattccacgt tttgtaggag ctagcacaag cactcgatgt caaatacatg ggtttgcaga      4080
     tgcgtccacg cgagcatacg gcttgtgcat ctacgctcgt gtgtcccatt caaatggagt      4140
     gtccgttaac ttattaacgg caaaacaagg gtggcaccct taaagacaaa aacaatccca      4200
     agattggagc tatgtgccgg tcatctgttg gcaaagttgt gggaggaagt tcgatctatt      4260
     attgattgcc ccgtagagaa ggttatattg tggtcagatt cggaagtggt tctacattgg      4320
     ctgcaaactc atccctccca gttaacaaca tttgtttcaa atcgagttgc agagatacag      4380
     gaaatcactt cgactgcctc atggagacat gtacccacca aagaaaatcc tgcagatcca      4440
     gtatctcggg gatcatcagt agcagactta gattcactat tttggtttaa cggcccgtca      4500
     ttcctgcaac aaaatgccat ggattggcct caaaatcgtc atttacgttt gacagaagcg      4560
     gacgcgtcat tagagaagaa gaaggtagcc acttcgcttg tcgcggccga tggcgaacac      4620
     aatcccatcc tcaccctaat agaaaactca tcatcatata tgatagtggt aggcacaatt      4680
     gcatatatcc gccggttcat aaacaaaagg aaaggagtaa tttggagtag tacttttccg      4740
     tcatcagaag agctcggcgc agcgtttcta gcagcagttg aagctgttca aagagacgca      4800
     ttctcgcagg agattgacaa aataaaaaag tcatcaaagt tgcaggcatc acttcaaaaa      4860
     ctaactccct tcatttcgga agaacaagtg ggctcatgct cgttttcgtt ggttcgagta      4920
     ggtggtcgcc tattaaacgc tcctctagcc cataacgcaa aatttccact gttaatgcca      4980
     aaaaattgta gatttgttac cctctatctt agctatttgc atcgagccaa ttgtcacgct      5040
     ggaccccgtg cactagtggg attcctaaga cagtccatgt ggctgataaa tgcacgaaga      5100
     gagtgcagtg ccattgtccg gaaatgcgta cactgtttcc actacaagcc gaagcttctc      5160
     tcacaaatca tgggaaatct tcccgctgat cgattgcgtg ggaatcgacc cttcgagatt      5220
     agcggagttg atttgtttgg accggttcgt gtatcgcttg ggattcgtgg caagcagcct      5280
     cttaagatgt acatagcagt gtttgtctgc tttgcatcta aggccgtaca cctagatatt      5340
     gtaaaagact tgacctctaa tacatttatt ttgtgcttat ccaggtttgt tggacgtcgt      5400
     gggcctcttg tcaaactcta ttgcgacaac gccacgaatt ttgttggtgc agctcgcatg      5460
     ctcaaggagc gcatggatgc attcaatgcc aaggacgaag acctcaaggc gtatgctccg      5520
     gctcacagtt tttcggtgga attcattccc ccgcgagccc cgcacattgg aggcctgtgg      5580
     gagtcggcgg tgaagtccgc caagaatctg ctgctcaggg ctgtgggcag cgcagtgctc      5640
     aaggaggacg agctgcatac ggttctcgtg gacgtcgagg ccgtgctcaa ttccagacca      5700
     ctggtggtcg acagcggcag ccccaacgaa ggggaggtgg tgactccagc gcagtcggca      5760
     gaacgctagt ttcgctgcca cccgaatcag agctgcccag accagacagc agcctctcat      5820
     atctgcaacg atggcagctc gtgtctgcca tcaagcaaag attttggaga gattggtcca      5880
     gagactatct tctcagcctt caacagcgag ggaagtggtc cgaggaggtc gccaacttgg      5940
     agccaggcag agtggtggca attcacaagg acaacgtgcc acttcaaatg tggctcaccg      6000
     gaatagtgga gaaagcaatc ccaggagcgg acgggaaggt tcgcgtggcc gtgattagga      6060
     cgaaggccgg ggtccacaag cgatcgatcc atcgtttggc gcctattcca ttggattgaa      6120
     gcctataggc tgtcaacgcg gccga                                            6145
//
ID   BEL-15_DP-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   super_2;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DP_;
KW   BEL-15_DP-I; BEL-15_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-288
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1486-1486 (2012).
XX
DR   Genome; super_2; Positions  199158  199445.
XX
SQ   Sequence 288 BP; 88 A; 59 C; 58 G; 83 T; 0 other;
     tgttaaggca aatcagttgc ctgtatatat atatatagct ataattatac ctaagagaca        60
     tgtatgaaat cacgctctta aattgtaatg tcatgcgctc ttataccatg ttgcgaacgg       120
     agcctatgca agcagcagcc gctcatgaag agggcgccgc tttagaataa actcacttat       180
     aattgaaagt cgattgagtg cacaagttga tctgtcggtc tgtctgattc cagtgtctaa       240
     ttaaaccttc agaaatcgtg cctaacggca ggctaatttg cacaacca                    288
//
ID   BEL-15_DTa-I repbase;    DNA;    INV; 7605 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DTa_;
KW   BEL-15_DTa-LTR; BEL-15_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7605
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1591-1591 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4830-5411] - Integrase core
CC   'GCTAT' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1965..6800
FT                 /product="BEL-15_DTa-I_1p"
FT                 /translation="MAEFRALLDSGSQINAISERAIQKLSLKTTNSMLKIN
FT                 GIGGKAHTSNSRVNVEIKSKHGDFTSRLEAMVMPHIVADQPTYPISTEKWK
FT                 IPKNITLADPSFGSPGKIDLLIGAEHYFEIMQSESINIQKGLPRLQNTKLG
FT                 WIVAGKIADQRTTSAVCAVLTEEEKVDEQLVKFWELDNFQPDRKCYSPVEK
FT                 QCESHFLQNIQQAQDSRFIVQLPFLEHTSALGESRDIATRRFLSLEKRLQR
FT                 DQAIKQGYIDFMKEYEVLGHMKEVPLVNLPRTHYFIPHHCVLKPESHTTKL
FT                 RVVFDASAVTSSGKSLNDLLHKGPTVQSTLMSILLRFRIHKYVFTADIEKM
FT                 YRQIWINPKDQHYQMIVWRNDPSEELKHYRLKTVTYGTKSAPYLATKCLEH
FT                 LASKQMPHYPVGSHALKNDFYVDDCITGANTIPEALQIRTELNKILLSSGF
FT                 KLRKWCANSNQLLQGLNKEDIIPEVQLEDTAYEDCSVKTLGIIWNPKIDKL
FT                 CGKTQIATNTKITRRDVVSEIFKIFDPLGLFSPVVIKAKIFMQGLTKEKFE
FT                 YNEELPEKLQKQWIAFRESLQSLNEIKISRHVFEGKIPAMKEIHTFVDASE
FT                 NAYAAAVYLRAVHKDKRVTVQLLCAKSHLAPVKAITLPRLELKAAVLGAQL
FT                 TSTVKEQLSMQEIPTYFWADSEIVLSWINSSTTIKDKFVATRITTIQETSL
FT                 QKEWRHVPSEQNAADVASRGICGSKFASHSLWFFGPLFLYGPPSTWPAPFI
FT                 ASKIERLAKPAETSLGAVKDDEFISKINHGNSFSKLLRIVAYIMRIKRKPL
FT                 VAGTTISLEELERARKIVLRIIQQKHFSADIKHLKKSREVEKSSNISTLTP
FT                 FIDQDDLIRVGGRLEAAELSFDAKHPILLPYNDPIVKLIFEKMHKENMHCG
FT                 AQALVATSRQKYWAIKAKTIARNVVLSCVKCTRAKPKLLEQIMGHLPPLRV
FT                 TQARPFLNSGVDYCGPFKIHYKIRGKKPHTAYIAIFCCFATKAVHLELVGD
FT                 LTTEAFLGALRRFISRRGKCQTLHCDNATNFVGARNKLQELEEAIFSKKAR
FT                 ETIVESCINKGVNFKFIPPRAPHFGGLWEAAVKSAKHLLLKNVTTANLTYE
FT                 ELETVIVEIEAILNSRPLVPMSSDPNDLTAITPGHFLIGEPLAAQADSEPS
FT                 QQPQSLGQRWQAVSKLKHAFWSQWSTDYLQQLQQRQKWRRSSANIKEGALV
FT                 LIKEDNTPVLQWPMGRVVKIFHGKDDFVRVVEVKTSKGFFKRDIQHIAPLF
FT                 PEEEPVHKHPISEDTATEDNDAEENKAKRKKTSTMPTLAMTLIVMLLLLPL
FT                 TVAQSINVTQFASRPGIFFEKIGKGQLATADWSIIVYYNLNPYWHDMNTFS
FT                 MGVTKIGHLCTQLPQKEACTSMYHHLKHLEEDLQSENMLLARTRKPRAPLD
FT                 IVGNIANSLFGVLDSTYAKEMANTITKVKGNEEHLLALLKNQTSLIDSTIN
FT                 VIKRDEISNSKRLKLIESYIADTKSTDSVFNTLSWYTSLSTQLAMLASNLQ
FT                 RVQTELINVLTDIRHNKISPMLISPRQLKEQMEKIRSHLKAGQLLPVSSDN
FT                 ILMAYQMMKGEGAIVKNHVIIKVNIPLISSQVLDIYKLTPIPFRI"
XX
SQ   Sequence 7605 BP; 2678 A; 1538 C; 1507 G; 1881 T; 1 other;
     tttggtgacc cccgactttg aatcgcaaat tattcaaatt gagactacaa tttgaagacg        60
     catcatcaga tcaattttga tataaataca tatccgaaga gatatatttt gttcaatttt       120
     gaacgcacgc atagatcatt gtttgatcac aaacttgaac cgcatttttt gttcaaagtt       180
     taacttgaat taactaattt caacgcatct gcagtaatca cggtagtgat taaaaggtca       240
     acaaggcgac caaaacttaa aaaaaaaaaa aaaacggctc agatttggtc aacttggcga       300
     accaaactat atttgataac gttccgtttt tacatttatt ttttaaacca cggtgtgagt       360
     cgaggcacat cataacaaaa tacctctaaa aggtttaatt tataaagtaa tatggcctca       420
     tcaaatattc agcccctatt ggatgagcag agtgcgctgg gcgagcgcat tcaaagccta       480
     ataagaaatt ttaaaaaaga ttccgactca aggaaaacta agcctgcgta tttcacagag       540
     cgattagcga atattgaagg cctgtggtct aatttcgcta ttagagatgc caaaattcag       600
     gagatagtta aaggaaaacc gattgacaac gactatttcc ttaataatta tttcattaaa       660
     ataaaaaatc tcgtgattga gtataaagag atattcaata cgaatctcgc tacattagaa       720
     ttggaaacaa actcgattac atctaccgaa gaggatttgg aaatcgaatc catgttccgc       780
     gagcaaaggg cgctaataga cagcctggaa cggataatga ataaagtaac gctcgaaaca       840
     agccataatt ttcattcaat tataaatcaa tattggaatg atattaaaaa cattcatgtc       900
     caaattcata aaaaatttaa aaacccgaag gaattgggat acgacgattc ccgatacctg       960
     acggccgaag acgccatagt gtcctatcaa gtggcattcg ggggaggaag gaatatggcg      1020
     acagtaccca gttcccctac gacggcagca gtgccgctgc ctaagataam aattccaaaa      1080
     tttgatggaa attatttaca atggcaacaa ttccatgatt tattcaagaa gatgattcat      1140
     gaatctgcac tacccattat acaaaaaatg tggtatttaa aaacaaacct gaatggagag      1200
     gccgaacggt taattcgtca cttgtcgcta acagaaaata attacgcgac agcatggaaa      1260
     acgctgcaag agcgatataa caacagaaga gtgctatgta atactctaat acagaaattg      1320
     gtagactacg cacccatgtc ccacgatgca aaagggataa agacaatgca tgataacgta      1380
     aaagaaacgt tatctgcatt aaataatatg gaaatcaaaa cagacaattg ggatccaatc      1440
     cttctccgta ttttaacgaa gaaattggat cgccaaacac atctgctgta tgaacaatca      1500
     attccggaca cacggaattt gcaatccata caggaatttt tggagttcct ggagcaacgg      1560
     ttcctaacac tagaagccat tggatctcct ccgataagag acctaaaaag acgggcacgt      1620
     gtgctgcagg aacggaagca caaattcaaa cttgcttctt ttgcaaaaaa ccaaatcata      1680
     gcatttttaa atgcgatgat ttcttaaaaa agacaccatc agagcgtctc aactggacgc      1740
     agaaaaataa attatgcgta aaatgcctaa gtgccaacca cactgccaaa acatgcacaa      1800
     agagagattg ctttaagtgc aacaaaaaac ataatacgct gctacatttg gaaaaggtgg      1860
     ctgataatct ggatgtaatt actgcggcgt cagtaagtgg aaaacaatcc agctatatac      1920
     tgttagccac tgcgagagtg ataatccaag gcaataatgg acaaatggcg gaattcagag      1980
     cactactaga ctctggatcc cagataaatg caatttctga aagagcaatt cagaaattgt      2040
     cattaaaaac caccaactct atgctcaaaa taaatggcat aggtggtaaa gcacacacat      2100
     cgaactcgag ggtaaatgtc gagataaaat caaaacatgg agattttacc tccagactag      2160
     aagcgatggt aatgccccat atagttgctg atcagccaac atatccgatt tcgacagaaa      2220
     agtggaagat cccgaaaaac attacgttgg ctgacccgag ttttggaagt ccaggaaaga      2280
     ttgacttact gattggagct gaacattact tcgaaataat gcaatccgag agcataaaca      2340
     tacaaaaggg attgccaaga ttacaaaata ccaaacttgg ctggattgta gcaggaaaga      2400
     tagctgatca acgaacaaca tcggctgtgt gtgcggtact aacggaagaa gaaaaggtgg      2460
     atgaacaact ggtaaagttc tgggagctgg ataattttca accagacaga aaatgttact      2520
     cgccagttga gaaacaatgt gagtctcact tccttcaaaa cattcagcaa gcacaggact      2580
     ccagatttat cgtccaacta ccctttctgg agcatacatc agcgctgggg gagagtcgtg      2640
     acattgccac gcgacgattc ttatccctgg agaaacgatt gcagagagat caagcgatca      2700
     agcaaggata tattgatttc atgaaagagt atgaagtact tgggcacatg aaggaagttc      2760
     ctctggtaaa tttaccaagg acacattatt tcataccgca tcattgtgtc ttaaaacctg      2820
     aaagtcacac aacgaaacta cgtgttgtat ttgatgcatc agccgtaacg tcttcaggaa      2880
     aatcattaaa tgatttattg cacaaaggcc caacagtgca aagtacattg atgtctatac      2940
     tattacggtt tagaatacac aaatatgtat tcactgccga tatcgaaaaa atgtatagac      3000
     aaatctggat aaacccgaag gatcaacatt atcaaatgat agtatggaga aacgacccgt      3060
     cagaagaatt aaaacactat cgtttgaaaa ctgttacgta tggcacaaaa tcagcaccat      3120
     acttagcaac aaaatgcttg gagcatttgg caagtaaaca aatgccgcac tatccagttg      3180
     ggtcccatgc cctgaaaaat gatttttacg tggatgattg catcactgga gcaaatacaa      3240
     ttccagaagc ccttcaaata agaactgagc tgaacaaaat tttgttgagt tcaggcttta      3300
     aattgcgaaa atggtgcgca aatagcaacc aacttctaca gggattgaat aaggaagata      3360
     tcatccctga agttcaattg gaagatactg catatgagga ttgcagcgtc aaaactcttg      3420
     gaattatctg gaatcccaag attgataaac tttgcggcaa aacacaaatt gccacaaaca      3480
     ctaaaataac gagacgcgac gtggtctcgg aaatatttaa aatatttgat cctcttggac      3540
     tattctctcc agtagtcata aaggccaaaa tatttatgca aggcctgacc aaggagaaat      3600
     ttgaatacaa tgaggaacta ccggaaaaac tacagaaaca atggattgca ttccgagaaa      3660
     gcttacagtc tttaaatgaa ataaaaattt cacgacacgt cttcgaaggc aaaatacccg      3720
     cgatgaagga aattcacaca tttgtggatg cttcagaaaa tgcgtatgca gcggccgtat      3780
     atcttcgtgc agttcacaaa gacaagaggg tgactgtaca attgctatgt gctaaatcgc      3840
     atttagctcc agtaaaagcg atcacccttc ctcgactgga attgaaggca gcagtactag      3900
     gtgcacaact gacgtccaca gtgaaagaac agctctcaat gcaagaaatt cctacatatt      3960
     tctgggcaga ttcggaaatt gttctgtctt ggataaatag ctccaccaca ataaaggata      4020
     aatttgtggc gacaagaatc acgacgatcc aggaaacatc gctacaaaag gaatggagac      4080
     atgtcccatc tgagcagaac gccgcggacg tagcatcaag aggaatatgt ggctctaaat      4140
     tcgcaagtca cagcctttgg ttttttggcc cactattctt atatggacca ccatcaacat      4200
     ggccagctcc gtttattgct tccaaaattg aacgtctggc taaacctgct gaaacatcgt      4260
     taggagcagt taaggatgat gagtttatat ccaaaataaa tcacgggaat tcattttcca      4320
     aactactaag gatagtagct tatatcatga ggataaaacg gaaacctcta gttgcaggta      4380
     caacgataag cctggaagaa cttgaacgag ccagaaaaat agttcttcgc atcatccagc      4440
     agaagcactt cagcgcagat ataaaacatt taaagaaatc tcgtgaagtc gaaaagagca      4500
     gcaacattag cactctcaca ccatttatag atcaggacga tctcatccga gttggaggca      4560
     gactagaagc agctgagcta tcgtttgatg ctaagcaccc tatactactt ccgtataatg      4620
     acccgatagt caaactaatc tttgaaaaaa tgcataagga gaatatgcat tgtggagccc      4680
     aagcattagt ggccacatca agacagaaat actgggctat aaaagcaaaa acaattgccc      4740
     gaaatgtcgt cctcagctgt gtgaaatgta ccagagccaa acctaagtta ttggaacaaa      4800
     ttatgggaca tctaccccca ttgcgagtaa cgcaagcaag accatttcta aattccggcg      4860
     ttgattattg tggacccttt aaaatccatt ataaaattag aggaaagaaa ccacatacag      4920
     catacattgc aatattttgc tgtttcgcca ctaaggcagt gcatctggaa ttagtcggcg      4980
     atctaacaac tgaggccttt ttgggagcac tgcgtcgttt tatcagtcga cgtggaaaat      5040
     gccaaacatt gcattgtgat aatgcaacca attttgttgg agccaggaat aagctccagg      5100
     agttggaaga agccatattt tcaaagaagg ccagagaaac cattgttgaa agctgcatta      5160
     acaaaggtgt caattttaaa ttcattccgc caagggcacc tcattttgga ggcttatggg      5220
     aagctgcggt gaaatcagct aagcatttgt tgcttaaaaa tgtaaccaca gctaatctaa      5280
     catatgagga gttagagacg gttatagtcg agattgaagc aatattaaat tctcgacctt      5340
     tggtcccaat gtcatcagat ccaaatgatt tgacagcaat aactcctggt cattttctga      5400
     ttggagagcc actcgccgcc caagctgaca gtgagccctc tcagcaacca cagtcgttag      5460
     gacaaagatg gcaagctgtg tcaaagctaa agcacgcctt ttggagtcaa tggtcaaccg      5520
     actatcttca acaactgcag caaaggcaaa agtggaggcg atcatcagcg aacataaagg      5580
     aaggagccct agtgttaatt aaagaggaca atacgccggt actacagtgg ccaatgggac      5640
     gagttgtcaa gattttccac ggaaaggacg attttgtcag agtagtggag gtaaaaacat      5700
     cgaaaggatt cttcaagcgc gatatccagc atatagctcc actattccca gaagaagaac      5760
     ctgtgcataa gcacccgata tccgaggaca ctgccactga agataacgac gctgaggaaa      5820
     ataaggcaaa gaggaagaag acatcaacta tgccaacgtt ggcaatgaca ttgatcgtaa      5880
     tgctcctact actaccatta actgttgcac aatcaatcaa cgtgacacag tttgcgtcaa      5940
     ggcctggaat tttctttgaa aaaattggaa agggacaact tgccaccgcg gattggtcca      6000
     taattgtata ttacaattta aatccctact ggcatgatat gaacacattt tccatgggag      6060
     ttacaaaaat tggccattta tgcacacaac ttccacagaa ggaagcatgt acaagtatgt      6120
     accatcacct aaaacatttg gaggaagacc tgcagtcgga aaatatgcta ttggcaagaa      6180
     cacgaaagcc aagagcacca ctcgacatcg ttggaaacat agcaaacagt ctgtttggcg      6240
     tactagactc cacatatgct aaagaaatgg ccaacacgat aacaaaggtt aaaggtaatg      6300
     aggaacactt attagcgtta ttaaagaatc aaacgtcgct aatcgattcc acaattaatg      6360
     tcataaagag agatgaaatt tctaactcaa agcgactaaa gttgattgag agttacatcg      6420
     ctgacacaaa aagtaccgac agtgtattta atacgctatc atggtataca tcactgtcaa      6480
     ctcaactcgc tatgctggcc tcgaatcttc aacgcgtaca aacggagcta ataaatgtac      6540
     taaccgatat tcggcacaac aagataagtc cgatgttgat atcaccacga cagttaaagg      6600
     agcagatgga aaaaatacga agtcacttaa aggctggaca acttctccca gtttcttcag      6660
     ataacatcct catggcatac cagatgatga agggtgaagg agctatcgta aagaatcatg      6720
     tcatcattaa agtcaacatt ccgttgattt cgtcacaagt cttagacatc tacaaactga      6780
     ctccaattcc ctttcgtatt taaagatggg atccagacga ttgaagcaag gtcacctttt      6840
     ctggccatca acagtcatca tgatgaattc gtcgagatgt ctgaagcgga cataaaaact      6900
     tgtcaagaaa gagcaaagaa cgacttcatt tgctataata aacaagcaat gttttcatca      6960
     gaaacaagtt gtgagatgaa attatttcat aacaaaacgg atgcctcttg taaattaata      7020
     aatacaaaga gatcatttct ctggcttgga acgtatgccg agaatcaatg gatttttgca      7080
     acaaaatcat gcttaaaact ctctgctgtt tgcgtcgatg gaacatcgga catagagtta      7140
     caaggttcag gacgtttaaa tgccagacct ggatgtacga ttcgtaactc attaatgaca      7200
     ataacaacac gaggcgttgc ggaaaccaag ctacaaacat catacgctcg atttggagac      7260
     atcgatctgc aagaaattat cccaacaaag tccaaaacta cacatccggt tgaggttgaa      7320
     aaattgaacg tcgatgacct gctgcaacga aaaattgaac tttttccgtc aaccacattc      7380
     acgctaccac acaatctctc aactattgag catcatcaca tcgccattta tattggatta      7440
     atcttcatga tgatcattag cattgttcat cttgttaaaa aatggcaagt gactcgacaa      7500
     catcctcaaa gacgtaatac acctgcaagt acagccacac tctcaactca accatttaca      7560
     atcaacatta atgattgttg aacttccgtt caacgggcgg gagaa                      7605
//
ID   BEL-15_DTa-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DTa_;
KW   BEL-15_DTa-I; BEL-15_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-510
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1592-1592 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 510 BP; 154 A; 116 C; 98 G; 142 T; 0 other;
     tgtacaattt tcgtctgaga agaaaatagt ccgcagtggc caccgccagt tattgataag        60
     attggaagtc gtcgctgcta aatgtccacc tacctaaaca aatttaggtc gatgcaggca       120
     ggcctgtgca catatgtgtg acgtcaggtc ataaaggaat cccacgatcg gtcacgtcct       180
     gacaccatct gcacgcgtac ctcgcgggaa tttcgctatc ttaaggagtt atcatgtctg       240
     tagccacctg gtattgtttt gataggataa accatgtatc tgataaatgt aacccaaagt       300
     agacctaagt aaataccctt tgacccaaga acatgtatat aaaccccatg caatattcaa       360
     taaaatcagt acgacaaaaa ctctttgcgt attcacttct ccgcagccca atttgtattg       420
     aacttattgc ggcgactatt gccactggta ttgtacttga ggcacgcaac aaaaactatt       480
     agcattcagg atttaatttt gatccataca                                        510
//
ID   BEL-15_DWil-I repbase;    DNA;    INV; 5401 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DWil_;
KW   BEL-15_DWil-LTR; BEL-15_DWil-I.
XX
NM   BEL-15_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5401
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5401
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(158..3373,3345..5381)
FT                 /product="BEL-15_DWil-I_1p"
FT                 /translation="MVVTRKMAANTASGLIDPMVDEQNGAVMADSAAGSSN
FT                 RDNEAPLKSSNEMTLMLSTMADMMKQMQQFQLEATRTNVVQMQAFQAEMVR
FT                 MNELQMQTIQAGIERTGLLVGRAFEHQQARAASRGDEVQSEEVRANFCMPT
FT                 GSTAASNDSELMARAEPPRKLYDLPSFDGTPESWPMFKEAFDMTTVEYGYN
FT                 NRQNLLRLQKAIVGRAREVVECLLIHSQNVPDVMETLKDRFGRPEQLVKSQ
FT                 INNVRSFPNISEDKLENLVEFATKVRNLSAFLDAANARHHMSNPTLMDILI
FT                 GKLPVQQRLSWSNYVMSLNREATIKDLSEWLQTMAKVVYGACLSTSESTSK
FT                 IKKERTRMFHADQRHQTSDYMEARCIMCNGSHWLRKCNGFANLNHDEKWQF
FT                 VRKKGLCFNCLREGHRSDKCKVQVKCEVPNCNRRHNTLLHMEKEPIVVVKP
FT                 SSSKEFSGTATESKGSTLLFKILPVRLHAKGHTVECFAFLDEGSAVSLMNE
FT                 SLAAALHLKGPKEDLTLQWFGNKQVTESTSRFDVGISGTNGYTIYDLKGVR
FT                 TVKNLKLPKQTINRKDLYFKNRHIENIPLQSYSNVEPELLIGLDNVHLGIP
FT                 RKVKSSGWNGPAVVKTKLGWVVYGKIDNHPNAGPNGMYVINDRSDIEELVR
FT                 NYIADAEMDVRDVKNQHQGQELERSNMLLEKTTRRMDNRFETGLLWKTDDF
FT                 NIPDSKEMVIKRQLSLEKKFNRDPEYRKQYCKLMLEYEQKGYIRLIQESEQ
FT                 NKSLDKAWYLPHFGVVNPHKPGKIRIVFDAAAEVDGVSLNALLMRGPDQCQ
FT                 PLSYVLMKFRQRSVGICADIEEMFHRVLIRKDDRWAQRILWRKDETDEFKA
FT                 YEMMVMTFGAKCSPASAQFVKNKNASEYKDLFPQAADAIVRNHYVDDFVHS
FT                 YGNETEAIRVTEQVIQIHRKGGFELKKFVSNSKVCNDKFGEGSMDDVLSLD
FT                 KDGALYSQKVLGMHWYTAEDKFGFILSFNKIDKSLFSDERIPTKREVLRIV
FT                 MSIFDPFGILVEYSLMAKLLLQSIWRKKIEWDQSINQEEYIEWKRWLRFVN
FT                 EIALIKGSKMVWHNFRVPRWYGTTFSNECVELHIFADASEMAYAAVGYWRV
FT                 EDAEGWKVSFIMGKTKCAPMKLSTVPRLELQAAVMATRLRNSILEGHDIQP
FT                 KRVCMWSDSSTVLAWIRSDQRKYKPYVAHRVNEILESSRVEEWNWVAGKDN
FT                 PADFGTKIKRDSRQSLWVTGPDFLLDDLEESPQQSKGNFSTDMELRPKFCM
FT                 VTTKQTDDLFGRFSSYTRLVRILAWVLRFRRKEVRENYLICSEIDYAEVVL
FT                 FRSVQKSSYPDEYSELARGKLIDKGSSLLKLTPEIDNDGLLRVGGRIDKAC
FT                 AVDMDTRRPIILPQGSHVTKLLITHYHNKWKHQNENTIIAEIRRKFWIPHL
FT                 RQEVRRTSRTCFICRMERARPAPPLMGQLPSDRVTPFVRPFSYTGIDYMGP
FT                 FAVVRGRGTEKRWICIFTCLTVRAIHLELARDLTADTCLKVIHNFMRRRGV
FT                 PIRIRSDNGTNLVGAERILRQELYKKVAAGLAIEKIEWLFNCPLNPHAGGC
FT                 WERLVRSVKRAMGHVLLQGNLKEDTLYSLMCEAENIVNSRPLTHIAIDSPT
FT                 GDPITPNHFLLGTANSTQTPHPQEEDYHPTMKDLRIKQQMTHSFWRKWVNE
FT                 YLPDLCRRTKWYHSVHPLALGDIVLICDSSQHRVNWQKGRIIEVTTGRDGQ
FT                 VRSAKVKTSTGEFRRPACMLAKLDFGESKMD"
XX
SQ   Sequence 5401 BP; 1681 A; 1005 C; 1391 G; 1324 T; 0 other;
     atttttattt cgcggttcag ttggtttcgc ggaccaatcc acctttggac aaaggcgagg        60
     atgcttctaa agaggcttgg attgatgaat tgaatgttta tgagaagcac aaggtaagtg       120
     cctattagat tgttgatttg gagggatttt ctgtcggatg gtggtaacta gaaaaatggc       180
     ggcaaacacg gcgtcaggtt taatcgaccc gatggttgat gaacaaaatg gcgctgttat       240
     ggcggatagc gctgcgggca gcagtaatag ggacaatgag gcgccgctga aaagctcgaa       300
     cgagatgact ttaatgttga gcactatggc agacatgatg aaacaaatgc aacaatttca       360
     gttagaggcg acacgtacaa acgtggttca aatgcaggca tttcaagcgg aaatggtcag       420
     gatgaacgaa ctacaaatgc agacaattca ggctggaatc gagagaacgg gcttactggt       480
     tggtagggca tttgaacatc agcaggctag agcggcatcc cgtggggatg aggtacagtc       540
     ggaggaagtt cgggcgaact tttgtatgcc gacaggaagt acagcggcca gcaacgacag       600
     cgagttgatg gcacgagcag aaccgcctag aaagttgtat gatcttccgt ctttcgatgg       660
     tacaccggaa tcatggccaa tgttcaagga ggcatttgat atgacaacag tggagtacgg       720
     ttataataac cgacagaatt tattgcgcct acaaaaggcg attgtaggcc gggctaggga       780
     agtagttgaa tgtctactta ttcacagtca gaatgtgcct gacgtgatgg aaactttaaa       840
     ggaccgattc ggaagacctg aacaactggt aaagagtcaa attaataatg tgagatcatt       900
     tccaaacatt tcagaagata aactagaaaa cttggttgag tttgctacga aggtgaggaa       960
     cctgtcagct tttttggatg cggccaatgc acgtcatcac atgtcaaatc caacactaat      1020
     ggacattctt attggaaagc taccggtgca gcaaaggctc agctggtcaa actatgttat      1080
     gtcgttaaat cgcgaagcga caatcaagga cttgagcgaa tggttacaga caatggcgaa      1140
     agttgtatat ggggcctgtc ttagtacttc ggaatcaacg tccaaaataa agaaggaaag      1200
     aacaagaatg tttcatgcag atcagagaca tcaaacatcg gattatatgg aagcaagatg      1260
     cattatgtgt aacggaagtc actggctgag gaagtgcaat gggttcgcaa acttgaatca      1320
     cgatgagaaa tggcagtttg tacggaaaaa gggcttgtgt tttaattgct tgcgtgaagg      1380
     ccatcgcagc gacaagtgca aagttcaagt taaatgcgaa gtgccaaact gcaacagacg      1440
     ccacaataca ttgctgcata tggagaaaga accgattgtc gtagtaaaac ccagcagttc      1500
     caaagagttt tctggcactg caacagagag caaaggctca acgcttctgt tcaagatact      1560
     accggtacgg ctacatgcca agggtcacac agtggaatgt tttgctttcc ttgacgaagg      1620
     gtctgctgtt tctctgatga atgagagctt ggctgctgcg ctccatttaa aaggcccaaa      1680
     ggaagatctg acattacaat ggtttggcaa taagcaggta accgaaagca caagccgatt      1740
     cgatgtgggc atatcgggaa caaatggcta cacaatttat gatctaaagg gcgttcgaac      1800
     agtcaaaaac ctaaagttgc ccaaacaaac aataaataga aaggacttgt attttaaaaa      1860
     tcgacatatc gagaacatac cattgcagtc gtatagcaat gtagaacctg agttgttgat      1920
     tggtcttgac aatgtgcacc taggcatacc cagaaaggtg aagtcgtcag gctggaatgg      1980
     accagctgtg gtaaagacta aactaggttg ggtggtatat ggtaagatcg ataaccatcc      2040
     taatgctggt ccgaatggaa tgtacgtcat aaacgatcgc tctgacatag aggaactcgt      2100
     tcgcaattat atagctgatg ctgaaatgga tgtaagagat gtgaagaatc agcatcaagg      2160
     gcaagagctt gaaagatcaa atatgctact ggaaaagaca acaagacgta tggacaatcg      2220
     ttttgagact ggattgttat ggaaaacgga cgatttcaac attcccgata gcaaagaaat      2280
     ggtaattaaa agacaattat ctttggaaaa gaagtttaac agggaccctg aataccggaa      2340
     gcagtattgc aaactgatgt tggaatacga gcaaaaggga tatattcggt tgattcagga      2400
     gtcagaacag aacaaaagcc tggataaggc atggtacctg ccacactttg gagtcgtcaa      2460
     tccacataaa cccgggaaaa ttagaatcgt attcgatgct gcagcggaag tcgacggtgt      2520
     gtcgctgaat gcactgctga tgagagggcc cgaccaatgc caaccattaa gttacgtact      2580
     tatgaaattt agacaaaggt ccgtaggtat ttgcgcagac atagaagaaa tgtttcatcg      2640
     cgtcttgata cgcaaagatg accgatgggc tcaacgcatt ctatggagaa aggatgaaac      2700
     tgatgagttt aaggcatatg agatgatggt aatgacgttt ggagcgaaat gctcacccgc      2760
     atcagcgcag tttgttaaga ataagaatgc atcggaatac aaggacttgt ttccacaggc      2820
     ggctgatgct attgtgagga atcattatgt tgatgatttc gtccactcat atggcaacga      2880
     aacagaagca ataagagtta cggaacaggt gatacagata caccgaaagg ggggatttga      2940
     gttgaagaaa tttgtatcta actctaaagt ctgcaatgat aagtttggtg aaggtagcat      3000
     ggatgatgtt ctgagcctcg ataaagatgg ggcattgtat agtcagaagg tacttggtat      3060
     gcattggtat acggcagagg ataaatttgg gttcatactt tcgtttaata aaatcgataa      3120
     atctctgttc tctgatgaaa gaattccaac aaagcgggaa gtactacgga tcgttatgtc      3180
     aatcttcgat cccttcggaa tattagtcga gtactcgttg atggcaaaac tcctccttca      3240
     gtctatttgg aggaaaaaga tagaatggga tcaatccata aatcaagaag agtacatcga      3300
     atggaaaaga tggcttcgtt ttgttaatga aatagcttta ataaagggtt ccaagatggt      3360
     atggcacaac ttttagtaat gagtgtgtag agttacacat atttgcagat gcgagcgaga      3420
     tggcgtatgc agcagtgggc tattggcgag ttgaagatgc tgaaggatgg aaagtgtctt      3480
     ttataatggg aaagacaaaa tgcgcaccga tgaaactgtc tactgtgcca agactggagt      3540
     tgcaggctgc ggttatggcg actaggctca gaaattcgat attggaggga catgatattc      3600
     aaccaaaacg agtttgtatg tggtcggact catcaactgt tttagcatgg atccgttcag      3660
     atcagagaaa gtacaagcca tacgtcgccc atcgagtgaa cgaaattcta gaaagctctc      3720
     gcgtcgaaga atggaattgg gttgccggca aggacaatcc agcggatttt ggcacgaaga      3780
     ttaaaagaga cagcagacag tcactatggg taaccgggcc agatttttta ttggatgatc      3840
     ttgaggaatc accacagcag agcaagggta attttagtac tgacatggag ctgcgcccaa      3900
     aattctgtat ggtcaccacg aagcaaacgg atgatctctt tggaagattc tcatcgtaca      3960
     cgagactcgt acggattctg gcttgggtgc tacgatttag aagaaaagaa gttcgtgaaa      4020
     attacctgat atgctcagag atagactatg ctgaagtagt tctgttcaga agtgtacaaa      4080
     agagttctta tccagatgag tatagtgagc tcgccagggg taaactcatt gacaagggaa      4140
     gtagtcttct aaaactaaca ccggagatag ataatgatgg cttgttacgt gtaggcggac      4200
     gcatagataa agcttgtgcc gttgatatgg acactagacg cccaataatt ctgccacaag      4260
     gaagccacgt gacgaaactg ctaatcacac attatcacaa caaatggaag catcaaaatg      4320
     aaaatacgat catcgctgaa atacgtcgga agttttggat tcctcaccta cgccaagagg      4380
     tacgtcggac gtcacgaaca tgcttcatat gccgtatgga gagagctcgc ccagcaccac      4440
     ccttgatggg acaactgccc tcggatagag ttactccttt tgttcgtcca ttttcttaca      4500
     ctggaattga ctacatgggg ccgtttgcag tggttagggg aagaggaacg gagaagcgat      4560
     ggatatgcat ttttacttgt ttgactgtac gcgccataca tttggaattg gctagggact      4620
     tgacggccga cacttgcctt aaagtcattc ataacttcat gaggcggcgt ggagtcccaa      4680
     taagaatcag gtctgataac ggaacaaacc tagtgggagc cgagcgaata ttaagacaag      4740
     aattgtataa gaaagtagct gccgggctcg caatcgaaaa aatcgagtgg ctttttaact      4800
     gcccattgaa tccacatgca ggcggatgtt gggaacgttt agttcgaagt gtaaaacgag      4860
     ctatgggaca cgtgctacta caaggaaatt taaaggagga taccctctac agcttgatgt      4920
     gcgaagctga aaatattgtt aattcacggc ctttgacgca cattgccata gatagtccga      4980
     caggggatcc tataactccg aatcactttc ttttaggtac agccaactcc actcagactc      5040
     cgcatccgca agaagaggat tatcacccta ccatgaagga tttgcggatt aaacagcaga      5100
     tgactcattc gttttggcgc aagtgggtaa acgaatacct gcctgatttg tgtcgccgca      5160
     ccaagtggta tcattcggta cacccgctag ctctgggaga tatcgtcctt atttgcgaca      5220
     gctcacagca tcgagttaac tggcagaagg gcagaatcat cgaggtgaca accggacgag      5280
     atggccaagt acgatctgcg aaagtgaaga ccagcactgg agagtttcgt cgaccggcat      5340
     gcatgttagc caaactggat tttggtgaat ctaagatgga ctagattcac ggtggcgggg      5400
     a                                                                      5401
//
ID   BEL-15_DWil-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_DWil-LTR.
XX
NM   BEL-16_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-380
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 380 BP; 126 A; 55 C; 88 G; 111 T; 0 other;
     tgttgtgaag aaatgacaat agcgttagaa tttaaattca aattgaaatg taatttgata        60
     gtgttagact acacataatt tagctataag aacatatgat tgttagtgtt gtaagacaca       120
     gtgttggaag acactagaag ggctagtgta caaaaacggt cacttgatat cgagccgtgg       180
     agagaaaagc gtgagtaaaa ttcgctatta gtttttaagt tgatttaatt tgtaatattt       240
     cttaggaaat aaaactctct atcacactct ctactcatca actcctcaac aacttggatg       300
     aagttggaac caggggcgtt tggagggggt cagaagttat tataagccaa ggggtccacg       360
     gcgcgtgggt cgagtcaaca                                                   380
//
ID   BEL-15_MoPha-I repbase;    DNA;    INV; 6065 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6065
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1141-1141 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           757..5928
FT                 /product="BEL-15_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MENNPEIAKLKQKKRIAKASFTRAENFLRTVEPDRVK
FT                 VDEVNLRLKKLEEAWKAIEESLTELAIFEAFSEEQVDQELVEQEERYIELR
FT                 LFGERLVRDRVRPAFAENNLNQAVDVLENQRIRNNDNQVKLPKIELPVFSG
FT                 KYEDWHSFYNTFQSLIHSNQSINEIQKFHYLISSVKGEAAETIASLEISEA
FT                 NYRDAWFRLKERYDIERFAVQNHIKAIFELPTLKKENSITLRSILDGILKH
FT                 IRALAALKRPTSQWDDLLIYVITSKLDYITTKEWESHVDAQRLPTFQELIE
FT                 FLTKRCQMLEAVARRNPSMPKVDNSRSASQGKVTTNHAAVTGVKCAHCQSD
FT                 HQIYQCQAFKELSVSDRLKQVKALRLCLNCLKGKHMAKDCYAGGCKKCAKK
FT                 HSTLLHEVRESSKEDKTEKNSLCVTQQVNQDKSVDTINACSQVVESVGAYQ
FT                 VLLSTAIVKVKDHTGHYKEGRALLDSGSQSSFITEEFAKALKLKTVDEKVM
FT                 IKGINQIASKSTKTVNLKIASRFGTFERDLSCIVLPKITQNLPTVSISTTA
FT                 LEIPRNIKLADPSFNVSNKIDLLIGAESFWELICIGQIKLGVKGPILQKSL
FT                 VGWLVTGPIGEVKSNKRVQTQCNLSTMAALNETMNKFWETENYKGSVATND
FT                 EESYVEGHFLETYKRQPDGRFIVQLPIKEEGIELLEDSRKVALRRLLALER
FT                 KFERRPEFKTEYVKFMREYAQLGHMKRIENHDSDKLRVFLPHHAVQNEDSK
FT                 TTKTRVVFDASSRYAKGRSLNDALYKGPVVQTDLFELIVRFRAYKYVLCAD
FT                 IKKMYRQILVNKEQTRLQSILWREEVNSEVEEYELLTLTYGTKPASFLATR
FT                 CLKQLAELEKSDYPRAAEIVNRDFYMDDLITGGNSESEIRELKGEVTELLA
FT                 RGGFELHKWNSNILINKLSQTEDEAVSLSKEQESRLLGVLWNPCKDTIYYK
FT                 VSLNDNEARVTKRAMLAQICRLFDPLGLVGPVIVSAKLLMQELWSLGVDWD
FT                 ESVPMHIQKAWEKIRSQLCMLNSLNIVRKVISGDKNCQVEIHGFCDASEKA
FT                 YGACIYIREQNERGEVTVSLLCAKSRVAPIKALSLPRLELCGAVLLVDLME
FT                 KIIKCLDLKMQKRFYWTDSSIVMAWLGSPAKKWQVFVANRVSNIHDKSSIS
FT                 EWRHVRSKENPADVISRGTMPKQLMQLKLWWEGPQWLKENESLWPKEREEL
FT                 SAEQIPERKRQAVIALAKIDEAFIEYQRFSSFNKLLRALAYVIRFSRNLKS
FT                 KKEERERGPITVIEVNKAKLAIVKLTQEEVFQEDLRELKSGKIHRRSKLAA
FT                 LHPFLDSQGILRVGGRLRHALIDEERKHPILLPAIHHVTTLIIVHHHERLF
FT                 HAGAQTTLNSVREEFWPIFAKSRVKKVIRNCVTCRKANPKPSWQLMGELPS
FT                 VRVNINRPFLCSGVDYCGPFHVRDRVRRNSKKYKAYVAIFVCMTTKAVHIE
FT                 LVEDMTTEAFLGALKRFTARRGKVQEIYSDNGTNFVGADRALQQILEAEEF
FT                 KNTVQEFATSERIEWHFIPPRSPHQGGLWEAAVRSMKLHLKRTLGDVSLTV
FT                 GEMFTVLAQVEAILNSRPITALSEDPNDLRALTPGHFLIGESPQAYPERNL
FT                 EEVPANRLSRWQHVEKIRQQLWKRWQGEYLSTCQQRSKWNSENSTKFQVGQ
FT                 LVMLKESESMPLKWTLARITEVHPGADKIVRTVTVRTRKGVYKRAIVNISP
FT                 IFED"
XX
SQ   Sequence 6065 BP; 2048 A; 1054 C; 1512 G; 1451 T; 0 other;
     tttggtcctt cgagccggat cctgggcgac gagaccggga tcgaaagggc ggcaggtctg        60
     gtttcagacc acaaggagca gcccgacctt ggaagcgagc gaagcaagtg tcctggattg       120
     ctgccaggga caattcagag gcgtcataaa ttcgagtaag gcaagccaga aagacgcgga       180
     cgagtacatg ttacccggcg tggtcgaagc cattagactc ggcgcgcggg aacgtccatt       240
     ttacccggcg tggtagaagc cattatactc ggcgcgcggg aacgtccatg ctgcccggcg       300
     cggtcgagta cattatacct gagggacgaa tacgttcgcg cagacacacg gacgacgcac       360
     ggacgacgcc atcaccacgt gcacgcagtt tggcggcaag agcaatccgc tggtgacaac       420
     gcagagacga caacagcagc ggaagtaatc acaagcgggc acgaggggga gcagcagaga       480
     aaatccgtgg atgacaacgt gaagacgaca gcagtacgag acgagcagac aagcgtgcgc       540
     ctcctacata agcgataagt aaaggacatt gcgaacaata gcaaattcaa gggacaaatt       600
     cttaaatgta aggattttca agtcagttat tagaagcgtt ttcaagtcag ttcgttataa       660
     gaatttaatc agttcggtac aagcatttta agtcagttcg ttgtagcatt tgatgttagt       720
     tgaattacgt ggcgcgtgat aaattaaata ataagtatgg agaataatcc ggaaatagca       780
     aaactgaaac agaaaaaaag gatagcgaag gctagcttca cgagagcaga gaatttttta       840
     agaaccgtag agccggacag ggttaaggta gacgaagtaa atttaaggtt aaaaaagtta       900
     gaagaagctt ggaaggctat tgaggaaagt ttaacagaat tagcaatttt tgaagcattt       960
     agtgaagagc aggtagacca ggagttggtc gagcaagagg aaaggtatat agagttaagg      1020
     ttattcggag aaagattagt gagagaccga gtgagaccag ccttcgctga aaataaccta      1080
     aaccaagcag tcgatgtatt ggagaatcaa agaatacgca ataatgacaa ccaggttaaa      1140
     ttacctaaaa ttgaattgcc agtgttttcc ggaaaatacg aggattggca ttccttttac      1200
     aatacgtttc agtcattaat acattctaac cagtctataa atgagattca aaaattccat      1260
     tatttaatat cttcagtgaa gggcgaagcg gccgaaacta tagcatcttt agaaatatct      1320
     gaagccaatt atagagacgc ttggtttagg ttaaaggagc gttacgacat tgaaagattc      1380
     gcggttcaaa atcacataaa ggcaatattt gagctaccta cgctaaaaaa ggaaaatagt      1440
     ataactctgc gcagcatatt agacggtata ttgaagcaca ttcgtgcatt agcggcttta      1500
     aaacgaccca cgagtcagtg ggatgattta ttaatttatg tcataacgag taaattagat      1560
     tacatcacaa caaaggaatg ggaaagccac gtggatgctc aacgtctgcc tacgttccaa      1620
     gagttaattg aatttttaac caagcgatgt cagatgttgg aggctgtggc cagaaggaat      1680
     ccatccatgc caaaggttga taattcacgc tcggctagtc aaggtaaagt cacgaccaat      1740
     cacgctgcag taacgggcgt taaatgcgcg cattgtcaaa gcgatcatca aatataccag      1800
     tgccaggcat ttaaagaatt gtcggtttca gatcgtttaa agcaagtaaa ggcgttgagg      1860
     ctttgcttga attgtctaaa gggtaagcac atggcaaagg actgttacgc gggtggctgt      1920
     aagaaatgcg cgaaaaagca tagcactttg ttacacgagg ttcgcgaatc ttcaaaggag      1980
     gataagactg agaaaaatag tttatgtgtg acacagcaag ttaaccaaga caaatcagtt      2040
     gatactataa acgcgtgttc tcaagtagtg gagtcggtag gagcatatca ggtattatta      2100
     tctacagcaa tagttaaagt caaggaccac acgggtcatt acaaagaagg cagagcattg      2160
     ttagatagtg gctctcaatc tagtttcata acggaagaat ttgctaaggc gttaaaattg      2220
     aaaaccgttg atgagaaagt aatgataaaa gggataaacc aaatcgcgtc aaagtcaacc      2280
     aaaaccgtaa atttaaaaat agcatcccgt tttggcacgt tcgaaagaga tttaagttgc      2340
     atcgtacttc ctaaaattac gcaaaatcta cctacggttt caataagcac gacggcgtta      2400
     gagataccaa ggaatattaa gttagcggat cctagtttta atgtatcaaa taagatagat      2460
     ttattgattg gagcggaaag tttttgggaa ttaatctgta tagggcaaat aaagttaggc      2520
     gtaaagggcc ccatattaca aaaatcatta gtcgggtggc tagtcacggg accaataggc      2580
     gaagttaaat ctaacaagcg agtacaaacc caatgcaatt tgagtacaat ggcagcatta      2640
     aatgagacca tgaataagtt ttgggaaaca gaaaattata agggaagtgt agcgacaaat      2700
     gacgaggagt catacgtgga aggacatttt ttagaaacgt ataagcgtca accggacgga      2760
     aggtttattg ttcaattacc gatcaaagaa gaagggatag aattattaga agactcccga      2820
     aaagtagcgt taaggcgact gctagcttta gaaaggaaat ttgaaaggcg tccagaattt      2880
     aagactgaat atgttaaatt catgcgcgaa tacgctcaat taggtcatat gaagcgaata      2940
     gagaatcacg atagcgataa attgcgggtc ttcttaccac atcacgccgt gcaaaacgaa      3000
     gatagtaaaa ccacaaaaac gcgggtggtg tttgatgcgt ctagtcgata cgctaaggga      3060
     aggtcgttga acgacgcatt atataaggga ccggtagttc aaacggactt attcgaatta      3120
     attgtacgct ttagggcata taaatatgtt ttgtgcgcgg acataaaaaa gatgtacaga      3180
     caaatcttgg tgaataagga acaaacgcgt ttacaaagta tcctgtggcg ggaagaggtt      3240
     aattcagagg tggaggaata cgagttactg accttaacgt acgggacaaa acctgcttca      3300
     tttttagcaa ccagatgcct aaagcaatta gcggaattag aaaaatcgga ttatccaagg      3360
     gccgcggaga tagtcaacag agatttttac atggacgatt taataaccgg cgggaattca      3420
     gaatccgaga taagagagct aaaaggggaa gtaacggagt tgttagcgcg gggagggttt      3480
     gaattacata agtggaattc gaacatttta ataaataagc taagtcagac tgaagatgag      3540
     gctgtgagtc taagcaagga gcaggaatcc agactgttag gagtattgtg gaatccatgc      3600
     aaggatacaa tttattataa ggtatcacta aacgataacg aagcacgtgt aacaaagaga      3660
     gctatgctgg cacaaatttg ccgactattc gatccattag gacttgtagg gcctgtcata      3720
     gtatcagcta aattactcat gcaagaatta tggagtctag gcgtagattg ggatgagtcg      3780
     gtgccaatgc acatacaaaa ggcgtgggag aaaataaggt cacaactgtg catgcttaat      3840
     agcttaaata tagttagaaa ggtaatctca ggagataaaa actgtcaagt agaaatacat      3900
     ggattttgtg acgcgagcga gaaggcatat ggagcatgca tatatatacg tgaacaaaac      3960
     gaacgagggg aggtaacagt ctcattgcta tgcgcgaagt cgcgtgtggc acctatcaag      4020
     gcgctatcat taccgaggtt agagttgtgt ggagccgtgt tgctggtaga tttgatggaa      4080
     aagataataa aatgtctcga cttaaagatg caaaaaaggt tttattggac tgactcttcg      4140
     atagtaatgg catggctggg ctccccggct aaaaaatggc aagtgttcgt agccaaccgt      4200
     gttagcaata ttcatgacaa atcctcaatt tctgagtggc gacatgtgag atccaaagaa      4260
     aatcccgctg atgtcatatc aaggggcacc atgcccaagc aattaatgca gctaaaattg      4320
     tggtgggaag gacctcaatg gttaaaagaa aatgaaagtt tatggcctaa ggaaagagag      4380
     gaattgtcag ctgaacagat accggaaaga aaaagacaag cggtgatagc gttagcgaaa      4440
     atagacgaag catttataga ataccaaaga ttttcttcat ttaacaaatt gttgcgagcg      4500
     ttagcatatg taataaggtt tagcaggaat ctaaagagta aaaaggaaga acgcgaaaga      4560
     gggccgatta cggttataga agttaataaa gcaaagttag caatagtcaa attgacacaa      4620
     gaagaagtgt tccaagaaga tttgagggag ttgaagagtg gcaagattca cagaagatcc      4680
     aagttagcag ctttacatcc tttcctggac agccagggaa tattaagagt aggaggaaga      4740
     ttaagacacg ctctgataga cgaagaaaga aagcacccta tattactgcc agcaatacat      4800
     cacgttacaa cattgatcat agtgcatcat cacgagagac tttttcatgc aggagctcaa      4860
     acgacattaa actcagtacg agaagaattt tggccgatct ttgcgaagag ccgagtaaaa      4920
     aaggtgattc gtaattgcgt gacatgccgg aaggctaacc ctaagcctag ctggcagctg      4980
     atgggcgagc tgccgtcagt tcgagtcaac atcaacagac ccttcttatg ttcaggagtg      5040
     gattactgcg gaccatttca tgttcgagat cgggtccggc ggaatagcaa aaaatataaa      5100
     gcatacgtgg ccatatttgt atgtatgact acaaaagcgg tgcatattga actggttgag      5160
     gatatgacaa cggaagcctt cttaggtgct ttaaaaagat ttaccgcacg aagaggtaaa      5220
     gttcaagaga tatactctga caacggaacg aacttcgttg gggccgaccg ggcattgcag      5280
     cagatcctgg aagcagaaga atttaaaaac acggtacaag aatttgcaac aagcgaaaga      5340
     atagagtggc attttattcc accaagatcg ccgcaccaag gaggtctatg ggaagcggcg      5400
     gtgcgttcaa tgaagttaca tttaaaacga acgctaggtg atgtctccct cacagtagga      5460
     gaaatgttca ctgtactagc tcaggtggaa gctatattga attcgaggcc gataacagct      5520
     ttatccgaag atccgaacga cctaagagcg ctgaccccag gtcatttttt gattggggaa      5580
     agccctcaag cttatcctga aaggaattta gaggaggttc ccgcaaatcg tttatccaga      5640
     tggcaacatg tggaaaaaat tcggcagcaa ttatggaaac gatggcaagg cgaataccta      5700
     tcaacctgtc agcaaagaag taagtggaac tccgaaaaca gtaccaagtt tcaggtagga      5760
     cagttggtga tgttgaagga gagtgaaagc atgccgttga aatggactct tgccagaatt      5820
     acagaagtac atccaggggc ggataaaatc gtccgaacgg ttactgtgcg taccagaaag      5880
     ggtgtatata agagagcaat tgtcaacatt tcgccgatat ttgaggacta aacaatggta      5940
     gaatttgaaa gattaatgta tttgtatttc cgtttatctt aatgtaggtt ttctttattc      6000
     ctttatacgt cctatttgtg tgtttgtatc tttacaaata tttctatttg tcaaggcggg      6060
     cggcg                                                                  6065
//
ID   BEL-15_MoPha-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-305
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1081-1081 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 305 BP; 105 A; 47 C; 80 G; 73 T; 0 other;
     tgtttgagtt cgtgtaaatc tagtaagtag gctgcggtaa aatgtcacta gtggtataag        60
     cgttgacttt gttgttcacg ggttggcaga agtgtgttag gagcgtgcgt gagagagtag       120
     tattagtagt tgaaaaagaa tatggcgcca aagtaagacc atgagctcgc cttgtaaatt       180
     tcaagcaaat aaagaaagtt taaaccgcaa taaggagacg tcatttaagt aacagcattt       240
     tccaagaaac gacgacaacc agcgttcaca ggagtgaacg cggcagtaaa agagcagcaa       300
     aaaca                                                                   305
//
ID   BEL-15_SiCu-I repbase;    DNA;    INV; 5482 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5482
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4989-4989 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..5479
FT                 /product="BEL-15_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPITTRSGRELPELPVRVRPTPAVIGNVPGVELNRDL
FT                 EDNATEMAGAPVPLSRSVSSISVRSSASSGHSVRSALRNVERERRRQEIQL
FT                 RMELLQLDAEEQRDRIFDENGISDDDDPLLGDNLFQQPDVRGRNAERRFDD
FT                 NDRRPVYNAEENDWRPVYNAVPTERQATPXQDKRSEDPVKAIADAMTTAIK
FT                 ALQPQKQSSSGDMKIMLARQSAGKDLPIFSGYPEEWPMFISQFRRSTELCQ
FT                 FSEEENICRLQRALKGAAYGAVQAMLVVGGNLRDIMTTLELRFGQPEWIMR
FT                 ALVKRVHNLPPPSEEKMESFADFAVAVKNLTSTAQSMNMPEYLLNPQMMEE
FT                 LVQKLPVMMRLDWGNHVVSTENEHANLIGFSAWLDRKAAAAMKVAGDWNRK
FT                 KDNRNHHQQRERKHDQMFAAVEEKEKCFAGCNDRHPLDKCTKFTNLDVNER
FT                 WKIVKNSRLCFCCLRLGHVTAQCRRKKPCTVVGCGKDNHHHLLHFQKREEE
FT                 DDDNAASPRPRGFFGHSLDSDTSEIMLKVLPVTLRGPKSSVSTYALLDDGS
FT                 TGSMIDASLADELGLEGEEFVHSTTWLDGKTVTQKSRRVQVWISGTDGTEF
FT                 HLENVKTKNDLSLPKTTVRATKLKKYWKHLRGIPLQTLDQAKPKIVIGQDN
FT                 CYLQLSRKTVEGPPNGPVATLTRLGWTLHGPVNKFRGMVSQDRAFFNNDDE
FT                 ALHHLVKEQFRLDAYGVQPDRQLPLSKADKRAEELMEKNSARIGDCWQTGL
FT                 LWKNDNPILPSSREAAMRRLKSLEKQMDKNEEFAEKYCAKIQEYLDKDFCR
FT                 KLTPEEAAVESEKEWLIPHFGRVNPNKPAKLRFLLDCAGTSNGMCLNDALL
FT                 QGPDLLTPLISVLAKFRQGEIAFSGDIRDMFHMVRIREEDSPALRFLWRGM
FT                 ERNHQPDVFQMNVLVFGAVSSPYQAQWIKNKNAEDFRGEFPDETIDAIQNR
FT                 HYVDDYLDSVSTIEEAVKKIEDVREIHRRGGFEIRGFLCNNEEVLKRVDPS
FT                 SSNNQLAIGQDEDILERVLGLYWDPKSDTFRFKRRFRTVDDAVVNGERVPT
FT                 KREVLKLLMCIFDPLGFLSHLAIRGKILIQDIWRMGIDWDEKIPDHLFAKW
FT                 KTFIAQLDELDKVQIPRCYSPGISQAEEVQLHLFSDASEQAICCSSYFRVT
FT                 CNDNVHSNIVFAKSKVAPLKVVSIPRLELQGALIAARMAHWIIENHDIKLT
FT                 RIVIWTDSRNVLCWLRADDPRRFKPFVSHRIGEILELTDVSFWRWVPTADN
FT                 VADDGTRDHTPADISCNSRFFHGPSFLLSPESEWPAEVKNVQVNVADLEIK
FT                 RDVALVTVEERPALKVELKWTDLVSDYASTRCCKSPTADDLSSAELEILKL
FT                 SQLSSFPEEISALKNGKPIHKSSKLAKLSPFLDDVGVLRMKSRLENARELD
FT                 DATKCPVILDSKDVLTKKLIDHYHLLFNHQGQEMLVNELRQRYWILGIRPA
FT                 VRSAWRRCEGCQMDNAKPAQAPMAPLPDFRVTKVNRPFTNVGMDHFGPMEV
FT                 VVKRSRVKRYGLVFTCLNTRAIHIEIAHSLDTDSTMQAIERFISRRGVPPC
FT                 FWSDNGRSFLGANGAMKKELEEIKEDELLTKLARKGISWKFIPPLSPHFGG
FT                 AWERMVRCIKKALHAVLTEKYLNDEMLLTVMAEIEATVNSRPLTFVSKDNA
FT                 DPEAITPNSFLIGTTSVLRPPGKFSEDDLTHKRRWRICQVYSEHIWKRWLK
FT                 EVLPSLGPRQKWNDAKRTLKIGDKVLIVDGNMPRNSWITGEVVDVFKGKDG
FT                 HVRVADVKTSLGVYRRPIVKLCPIIVETLTGSDNNHVVSLEG"
XX
SQ   Sequence 5482 BP; 1659 A; 1206 C; 1348 G; 1267 T; 2 other;
     aagtggtcct tctcccttac attgaacagc tcgtggaaat atgcccatta cgactagatc        60
     tggaagagag ctcccggaat tgcctgtgcg agtaagaccc accccagcag ttattggaaa       120
     cgtgcctgga gtggaactca accgggatct tgaggacaac gctacggaaa tggccggagc       180
     accagtccca ctgtcaagat cagtcagctc gataagcgta cgctcatctg cgtcatctgg       240
     acacagcgtg aggtctgcgc ttaggaatgt ggaacgtgag cgaagacgac aggaaatcca       300
     actgagaatg gaactcctcc aattggatgc cgaagaacaa cgtgacagga tctttgatga       360
     aaatggaatt tctgatgatg acgacccact acttggagac aacctattcc aacaacctga       420
     tgtccgtggc agaaacgccg aaagaagatt tgatgacaat gacaggcgcc ctgtctacaa       480
     tgctgaagaa aatgattggc gtcctgtcta caatgctgtt cctacggaaa gacaagcgac       540
     accgmsacag gacaaaagaa gtgaggatcc tgtgaaagct atcgcagatg caatgacaac       600
     agcgataaag gccctgcagc cccaaaagca gtcatcatcg ggggacatga agattatgct       660
     ggctcgccag tcagctggaa aggatttgcc catcttctca ggatatccag aagaatggcc       720
     aatgttcatc tcgcagttca ggagatctac cgaactttgc caattttccg aagaggaaaa       780
     catctgtcga ctccaacgag ccctgaaagg agcagcatat ggagctgttc aagccatgtt       840
     ggttgttgga ggaaacctga gggacattat gacaacattg gaactccgct ttggtcaacc       900
     agaatggatt atgagggcac ttgtcaagcg tgtgcacaat ctgccacctc catcagaaga       960
     gaaaatggag tcgtttgctg actttgcagt tgccgtgaag aatctgacct ccacagcaca      1020
     gtccatgaat atgccggaat acttgttaaa ccctcagatg atggaggagt tagtccaaaa      1080
     acttccagtc atgatgagac tggattgggg aaatcacgta gttagcaccg aaaatgaaca      1140
     cgctaactta attggatttt ccgcttggtt ggaccggaaa gccgcagcag caatgaaggt      1200
     tgccggtgac tggaacagga aaaaggataa ccgtaatcat catcagcaga gggaaaggaa      1260
     acacgaccag atgtttgcag ctgttgagga aaaagaaaaa tgttttgccg gatgtaatga      1320
     cagacatcct ctggacaaat gcacaaaatt caccaatttg gatgtgaatg agcgctggaa      1380
     aattgtgaag aactctcgct tatgcttttg ttgtctccga cttggccatg tcacagcaca      1440
     atgcagaagg aaaaaaccat gtactgttgt tggttgtgga aaggataacc accaccacct      1500
     tctccatttc caaaaacgag aggaagaaga cgatgacaac gccgcatctc cgcgtccacg      1560
     tggatttttt ggtcacagcc ttgacagtga caccagtgaa atcatgctga aggtgctccc      1620
     agtgactttg cgaggaccga aatccagtgt atccacatac gctcttctag atgacggatc      1680
     aactggatca atgattgacg ccagtcttgc tgatgaactt ggacttgaag gggaagagtt      1740
     tgtacactct actacttggc tggatggaaa aacagttact cagaagagcc gaagagtgca      1800
     agtttggatc tctggaacag atggcacaga gtttcacttg gaaaacgtga agacaaaaaa      1860
     tgatttgagt ctaccaaaga caaccgtaag agctacaaag ttgaaaaaat actggaaaca      1920
     tctacgaggg atcccactgc aaaccttgga tcaagcaaag ccgaaaattg ttattggtca      1980
     agataactgc tacctacaac tgagccgaaa aactgtggag ggacccccaa atggacctgt      2040
     agcaactctt actcgcctcg gatggacttt gcacggacca gtaaacaaat tccggggaat      2100
     ggtatctcag gacagggcgt tttttaacaa tgatgacgaa gcccttcacc atttggtaaa      2160
     agaacagttt cgcctcgacg catatggagt tcagcctgac cgacaattgc cgttatcgaa      2220
     agcagataaa cgcgctgaag aactaatgga gaaaaactcg gctaggattg gtgactgttg      2280
     gcaaactgga ctattgtgga aaaatgacaa ccccatatta ccttccagca gagaagcagc      2340
     gatgcgccgt ttgaagtccc ttgagaagca aatggacaaa aacgaagagt ttgccgaaaa      2400
     atattgtgca aagatccagg aatacctgga taaggatttt tgcagaaaac tcaccccgga      2460
     agaagccgct gttgaatccg aaaaagaatg gctgattcct cattttggaa gagtcaaccc      2520
     aaacaaaccc gcaaaactcc gcttcctgct tgactgcgca ggaacttcaa atggaatgtg      2580
     cctgaatgac gctcttcttc aaggacctga cctgttaact ccacttatct ccgtgttggc      2640
     aaagttccgt cagggagaaa ttgcgtttag tggcgatatc cgcgacatgt tccacatggt      2700
     gaggataaga gaggaagact cgcctgcact gcgtttcctg tggaggggaa tggaaaggaa      2760
     ccatcaacct gatgtttttc agatgaacgt gttggtgttt ggtgcggtat cgtcacccta      2820
     ccaagcacaa tggatcaaaa acaagaatgc agaagacttc agaggagagt ttccagacga      2880
     aacaatcgac gccattcaaa accgccacta tgttgatgat tacctggata gtgtgagtac      2940
     aattgaggaa gcagttaaga aaattgaaga cgtacgcgaa attcatcgta gaggaggttt      3000
     tgaaatcagg ggatttcttt gcaacaatga agaagtactg aaacgtgtgg acccatcatc      3060
     atccaacaat caacttgcca ttggacaaga cgaagatatt ttggagaggg tgctggggtt      3120
     gtattgggat cctaaaagtg acacgtttcg cttcaaacga agattcagga ccgtggacga      3180
     tgctgttgtg aatggtgaac gagtgccaac taagagagaa gttctgaaac ttcttatgtg      3240
     catatttgac ccgctcggat ttctaagtca tcttgcaatt cgtggaaaaa tcctcataca      3300
     agatatctgg agaatgggaa tcgactggga tgagaaaatt ccagatcatc tttttgcaaa      3360
     gtggaaaacg ttcatcgcac agctggacga gctggataaa gttcagatac caagatgcta      3420
     ctcacctgga atctctcaag ctgaagaagt ccaactccat ttgttcagtg acgccagtga      3480
     acaagctatt tgctgctctt cttactttcg agttacctgc aacgataatg tccactcaaa      3540
     tattgtcttc gcaaaatcaa aagtagctcc cttgaaagtg gtgtcgattc ccagactgga      3600
     actacaagga gcactgatag cagcccgaat ggctcattgg attatcgaga atcacgacat      3660
     caagctgaca agaattgtaa tttggacgga ttctagaaac gtgttatgct ggctacgagc      3720
     agacgaccct cgccgcttca aaccattcgt ttcacaccgg ataggagaga tcttggagct      3780
     gacagatgtg tcattttgga gatgggtacc taccgcagac aacgtagctg atgacggaac      3840
     gcgtgatcac acacctgccg atatttcctg taacagtaga ttcttccatg gaccgtcatt      3900
     tctcttatca ccagaatcgg aatggcctgc tgaggtgaag aacgttcaag taaatgtagc      3960
     tgaccttgaa ataaaacgtg atgtcgctct tgtcactgtt gaagaacgac ctgcactcaa      4020
     agtggagttg aaatggactg acctagtttc tgattatgcc tcgactcgtt gctgtaaatc      4080
     acccactgca gacgacttgt caagtgccga gctggaaatc ctgaaactat cacaactgtc      4140
     gtcattcccc gaggaaatat ctgcgttgaa aaacggaaag ccaattcaca aatccagtaa      4200
     actagcaaaa ttgtcacctt ttctggatga tgtcggagtg ctgaggatga agagtcgcct      4260
     agaaaatgct cgtgaattgg atgacgccac aaaatgccca gtgattctgg actcaaaaga      4320
     tgtgctaacg aaaaagttaa ttgaccatta tcacttgcta tttaatcatc agggacaaga      4380
     aatgctagta aacgagttac gacaacgcta ctggatcctg ggaatacgac cagctgttcg      4440
     aagtgcctgg agaagatgtg aaggctgtca gatggacaat gctaaacctg cccaagcacc      4500
     aatggctcca cttcccgatt ttcgcgttac aaaagtaaac aggccgttca ctaacgttgg      4560
     aatggaccat ttcggaccaa tggaggtggt agtgaagaga tccagagtca agcgctatgg      4620
     ccttgtgttt acatgtctaa acacaagagc catccatatt gaaattgccc acagtctgga      4680
     cacggactcc acaatgcaag ctatagaacg cttcatttct cgccgtggag taccgccttg      4740
     tttttggagt gacaacggaa gaagcttctt gggagctaat ggagcgatga agaaggagct      4800
     ggaggaaatt aaggaggatg aactactgac caaattggca aggaagggaa tatcgtggaa      4860
     gtttattcca cctttatcac cgcactttgg aggagcttgg gagaggatgg tccgctgcat      4920
     taagaaagcc ttgcatgcag ttctgacgga aaagtacctc aacgacgaaa tgctgctcac      4980
     cgtcatggcg gaaattgaag cgactgtgaa cagccgacct ctcaccttcg tgtcaaagga      5040
     taatgcagat cccgaggcca taacgccgaa ctcattccta attggaacga ccagtgtctt      5100
     acgcccacca ggaaaattca gcgaggacga cctgacccat aaaagacgct ggaggatctg      5160
     ccaggtgtac agcgaacaca tctggaaacg ctggttaaag gaagtgctcc cttcactcgg      5220
     cccacgtcaa aaatggaatg atgccaagcg gaccctcaaa attggagaca aagtcctcat      5280
     cgtggatggg aatatgccaa ggaattcttg gattactgga gaagtcgttg acgtcttcaa      5340
     aggaaaggat ggacatgttc gtgtcgctga cgtgaagaca tcgcttggag tctaccgtcg      5400
     tcctattgtc aagctgtgcc cgattatcgt ggagaccctt actggaagtg ataacaacca      5460
     cgttgtttca ctggaggggg ta                                               5482
//
ID   BEL-15_SiCu-LTR repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-393
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5012-5012 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 393 BP; 112 A; 65 C; 74 G; 142 T; 0 other;
     tgaaggcgcc gacgttgtaa cggtcgtgat gcaacggact tttctgtctc gtcgaatgcg        60
     tggagtcgga gagcaaatca accagtcaac agtaaaagcg tttctcgtgt gcatttacta       120
     cctagtttta gctaaaattg ttattgttgt tcattgtcga ttgttgtgaa aaagtcatgt       180
     catgtaattt gctgtaaaat tactactaaa acggtctaaa ttattgtaat tattgtgtgt       240
     aactaactaa aattgataaa gtcagttgca tttgattgtt attgtttgtt aaatgaactg       300
     ttacaataaa attgttaaat tgtaacactg aaatcttcgt cacgactcca catctcactt       360
     tgctttgctt tcttcgtaaa ctctgcgttt aca                                    393
//
ID   BEL-15_SpEx-I repbase;    DNA;    INV; 6099 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6099
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6895-6895 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           703..5931
FT                 /product="BEL-15_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAEVELQSSINRREYEFRNVQIIYDLAKRAMVDSTKI
FT                 STFKARYKSIEKIRDNFIESHENFNKLQLKLNPEYKFDNKPLLSFDELYYA
FT                 AVEFADSLGASTTSSATSEPSAGPSRHSSNTQVKLPKLQIPKFDGKIENWQ
FT                 TFKDSYVPLVHNNGSLSDIEKFHYLLSCLSGCALTLAKGVPITLANYSVVY
FT                 SALLERYDNKRILATTYLEKLFMVTPIQRPSLANLSDFTNVLYESVNALRA
FT                 LNIEDLSEFILFYIASRPLDLETKRRFELQNTNQIPKFNDLVVYLQNYIKI
FT                 LEVSQPISTTTANSIIKQSRSNNNKADATRATKDPRRSSFVGSSNNNNSNK
FT                 SNQLVCVCCNENHSIYRCGKMHSMSMDQREKIVQELKLCRNCLRPGHDSDS
FT                 CKSKSTCFICNTKHNTLLHVENKSLLTLTVNSNLSDTVNPSTALASTTKSN
FT                 DSSSATSINSTKILGSAVVRIHHADGSLQYARTLIDSGSMDSFITSACARR
FT                 LGLPIKKCNLNVTGLGQNFVCNIKGYTSGSIIPRSSESPKFDLPLIVLPKI
FT                 TSAMPSTELPLFVKDSFLHLDLADREFYKSGPIDLLLGVECFDQIYTGSRY
FT                 SPGPGLPCALSSVFGWVITGQYFHNTEIKIPSEPVTSLLASSCSLDEIVQR
FT                 FWESEEPPKCKISAPEDEYCEQKYKEGTYRTADGRYVVPILLKDDAPPLGD
FT                 SYRQAFNRFLNLENRLAKQSDLKNEYKKFMRQYEELGHMQPVATSSSDRYL
FT                 IPHHCVLRPESSTTQLRVVFDASCKTNNNLSLNNIVSVGPKLQIDIIDLIT
FT                 KFRLHKVVFTADICKMYRQILIRPEDRCYQHILWRPDPSMPLSEYELNTVT
FT                 YGVSSSPYLAIRTLRQLAEDHGSEYSSRASEVLFEETFMDDITTGCSSLEE
FT                 ARQLKSDIVSLLSKGHFELRKWSTNTPSLLSDVPPDHCQTSKSFEESGNEF
FT                 VKILGIRWNPSDDNFSYSFSDSFNVQFTKRSILSIVARIYDPLGWISPVVF
FT                 AAKSLLQEMWRSNLSWDEAIPKELAKRWHLIAANLSDLQQISLPRLVVPSN
FT                 PTEVHLVGFCDGSLKGYGCCVYLCVVTEHSTVSNLLIGKSRVAPIKPTTVN
FT                 RLELCAAVLLARVLSHMNKLLKEKLAITSVRAYSDSTTTLSWLNTAPHLLK
FT                 MYIANRVVQATDSVSPESWYHVPTEDNPADCCSRGVSCTELAGHPLWWKGP
FT                 TWLQKLPCFWPSKQTLLAKEELPELKPIVTESFITVQEENIFLKLTLRCSS
FT                 FTKLLRTLAWCIRFVSNLQKAKSDRKFSALTSSELDKSMKTLVKFTQNHYM
FT                 SSQVQQVQKHEQCEKSVQKLSPFLDEDGLMRVGGRIDEAKLSPSALHPLLL
FT                 PKQCPISRLIVDHFHLKYLHCGPRTLQSLIQRKFWIVGLRLLIRTVLSKCV
FT                 RCFKNRPISITPLMGKLPAARVQPSRCFQTTGIDFGGPFIVRESRRRGAKS
FT                 YKAYVCLFVCLSTKAVHLEAVTELSAEAFLAALDRFVSRRGMCHTIVTDNG
FT                 TNFVGANRYLNEIVDELRKHYPDIADGLATRQINWQFNPPGAPHFGGIFES
FT                 GIKSTKYHLKRVVGAQVLTLEEFFTILAKVEAVLNSRPLCTSSPDPQESDI
FT                 LTPGHFLTGGPIVSLPEEPLGETRCPRSRWQMIKKITQDFWRVWQRDYLHT
FT                 LQQKSKWYSKAPNLKVDDLVIINEPNLPPLFWKLARVEQVHAGSDNIVRVV
FT                 TLRTANGKSIRRPVVKVCPLPFN"
XX
SQ   Sequence 6099 BP; 1768 A; 1245 C; 1219 G; 1866 T; 1 other;
     ttatttggtg cctcctgtga ggacaaagta cctcacgtat ttcatttcat ttaaaaattt        60
     tacgatttat gctacgtaaa tctcgttaat gtttattaac aaataattta aattcagtga       120
     ataatataag tggctaaaac tgccacgaat tcatagtttt cttcttaaat attattacct       180
     acttcgttcg tacctacatt agaccgcgtg gtcgctcggc cgctcgctcg gcgctgttta       240
     ggtactagat actcgtattg tatctacctc ctatgtaaaa gtaaatccag tgtgctttat       300
     tttagaatct aaataataca tactcgtaca aatacttatt catagaaagt tgctgcattg       360
     cctggtttag gttttgaagt gtttcttatg atagttgtgc tcgaaatttc tcgtagataa       420
     aacataaagt aaagtaggta catattagct cgtacagctg aatcttacta acaaataaat       480
     acgaacaata cacaataact aagctcaata taattaagta atttcgtggt tttggatcgt       540
     tcgtttgttt acattttgtt gcgcgggtat acatattata cctacgcgct atatagcgga       600
     ctatcgttgc cgattgcgtt gcggttcgga gacgattctc gttattaccg aagtacgtac       660
     aaaccttgaa tttattatta ttgttttcgt atccaaaaca agatggccga agtcgagtta       720
     cagtcgagta ttaacaggcg tgaatatgag tttagaaatg tgcagattat ttacgatcta       780
     gctaaaaggg ctatggtaga tagtactaaa atatcaacat ttaaggcgag atataagtcg       840
     attgagaaaa ttagagataa tttcatagaa tctcatgaaa acttcaataa attacaatta       900
     aaattaaatc cggaatataa gttcgataat aaacctttat tgtcattcga cgagttatat       960
     tacgcggcgg ttgagttcgc cgactccctt ggtgcgagta cgacctcaag tgctacgtca      1020
     gagcccagtg ctgggcctag tcgtcactcg tctaatacac aagtaaagtt gcctaaattg      1080
     caaattccga aatttgatgg taagatagaa aattggcaga catttaaaga tagttacgtt      1140
     ccgcttgttc ataataatgg ctcgctgtca gatattgaga aattccatta tctgctctcc      1200
     tgtctgtcgg gttgcgcact gacactcgcc aagggtgttc ctataacttt agctaattat      1260
     tccgttgttt acagtgcctt actagaaaga tacgacaaca aacgcatttt ggcgacaact      1320
     tatttagaaa agttgtttat ggtgacgcct attcagaggc catcattggc taatttatct      1380
     gacttcacaa acgtacttta tgaaagtgtt aacgccttac gtgcattaaa tattgaagat      1440
     ttatccgaat ttattttgtt ttacattgcg tcacgacctc ttgaccttga aaccaaaaga      1500
     cggtttgaat tacaaaatac taaccaaatt ccaaaattta acgacttggt tgtttattta      1560
     caaaattata taaaaattct ggaagtgagt cagcccattt cgaccactac agcaaactca      1620
     ataattaagc aatctcgtag taacaataat aaggccgatg ctacacgtgc aacaaaagac      1680
     ccgcggagat cgtcattcgt aggatctagt aacaacaata atagtaacaa atccaatcaa      1740
     ttagtttgtg tatgttgtaa tgaaaatcat tccatttatc ggtgtggtaa aatgcactct      1800
     atgagtatgg atcagcggga gaaaattgtt caagaattaa agttatgtag aaattgctta      1860
     agaccaggtc acgatagtga cagttgtaaa tccaagtcca cttgtttcat ttgcaatacg      1920
     aaacacaaca cactgttgca tgtcgaaaat aaaagtttat taactctgac tgttaattca      1980
     aacttgtctg acaccgttaa cccgagtacc gcgcttgcta gcacgaccaa gtcaaatgat      2040
     tcgagtagtg ctacctccat taacagtacg aaaatattag ggtcggcggt agtacgaata      2100
     catcacgcgg acggctcgct tcagtatgcg cgcaccctta ttgacagcgg ttcgatggat      2160
     tcttttataa cgagtgcgtg tgcacgtcgc ttgggtttgc ccattaaaaa atgtaactta      2220
     aatgttactg gtcttggtca aaactttgtt tgtaatataa agggttacac gtctggttcg      2280
     ataatacctc gttcgagtga atcacctaag ttcgatttgc ctttgatagt tttacctaaa      2340
     attacttccg cgatgccctc gaccgagcta ccgttgttcg tcaaggattc cttcctgcat      2400
     cttgatctcg cagaccgtga attttataaa tcgggtccga tcgatctttt gttaggtgtt      2460
     gagtgttttg atcaaatata tactgggtca cgttacagtc ccggacccgg actaccttgt      2520
     gcattgtcca gtgtgttcgg ctgggtgata accggtcaat attttcataa cacggaaatt      2580
     aaaattccca gtgaacccgt tacgtcactc ctcgcgtctt cttgctcgct cgatgagatc      2640
     gttcaacggt tctgggagtc cgaggaaccg ccgaaatgta aaatttccgc tcccgaggac      2700
     gagtattgtg aacaaaagta taaagaaggt acttaccgta ctgccgacgg tcgttatgta      2760
     gtacccatct tattaaaaga tgatgctcca cctttaggag attcataccg tcaagccttc      2820
     aatcgttttc ttaatttaga aaaccgactc gctaagcaat cagatttaaa gaacgagtac      2880
     aaaaaattca tgagacagta cgaagagcta ggacacatgc agcccgtagc cacttcgtct      2940
     tctgatcggt acttaattcc acatcattgc gttttgcgtc cagagagttc tacgactcag      3000
     cttagagtag ttttcgacgc gagttgtaaa actaataaca acctttcctt aaataatatc      3060
     gtttccgttg gaccaaaact tcaaattgac attatcgatt taattacaaa atttcgactt      3120
     cataaggtag ttttcaccgc agacatttgt aaaatgtacc gtcagatctt aatcagaccc      3180
     gaagataggt gttatcaaca cattctttgg cgtcccgacc ctagcatgcc attaagtgaa      3240
     tacgagctaa acaccgtgac ttatggtgtc agtagttccc cttacttggc cattcgaacc      3300
     ctccgtcaac ttgcggaaga ccacggctct gaatactcga gtcgtgcatc tgaagttctg      3360
     ttcgaagaaa cgttcatgga tgatattact acaggatgtt cgtcactcga ggaagctagg      3420
     cagttaaagt cggatattgt atctttgcta tcaaaaggtc actttgagct ccgaaagtgg      3480
     agtaccaata cgccgagtct attgtcagat gttcctccgg atcattgtca aacttctaaa      3540
     tccttcgaag aatcaggaaa tgagtttgtc aagatattag gaatacggtg gaatccatca      3600
     gatgacaact tctcgtatag cttctcagac tcatttaatg tgcagttcac caagagatcc      3660
     atcctatcca tagtagcccg gatttatgat cccttgggtt ggattagccc agtggttttc      3720
     gcggccaaat ctttattgca agagatgtgg cgctctaatt tgtcttggga tgaagctatt      3780
     cccaaagaat tagcgaaaag gtggcatttg atagctgcga atttgtcaga tttacaacaa      3840
     atctctcttc ctaggcttgt tgtaccttcc aatcctacgg aggtacattt ggtgggcttt      3900
     tgtgatggct cattgaaggg atatggttgt tgcgtgtatc tctgtgtggt tactgaacat      3960
     tccactgtta gtaatttgtt gatagggaag tctcgtgttg cccctataaa accaacgacc      4020
     gtaaataggc tggagctatg cgcagcagta ctcttggcac gagtactttc tcacatgaat      4080
     aagctcctta aggaaaaact tgcaatcaca tccgtccgag cttattccga tagcacgact      4140
     actttgtcgt ggttaaatac agcaccccat ctactgaaaa tgtatattgc caatcgagta      4200
     gttcaggcta ccgactcggt cagtccggag tcctggtatc atgttcctac agaggacaat      4260
     ccggccgact gctgcagtcg tggtgtatct tgcacggaac ttgctggcca cccattatgg      4320
     tggaaaggcc ctacatggtt acagaagttg ccatgctttt ggccttccaa gcagacattg      4380
     ctcgctaagg aagagctgcc tgaattgaaa cctatagtaa cagagagttt tatcaccgtc      4440
     caagaagaaa atatattttt aaaattaact ttaaggtgtt cttcttttac aaaacttcta      4500
     agaactttgg catggtgtat tcgattcgtt agtaacttac aaaaggcaaa gtcagatcga      4560
     aaattctccg cgcttacaag ttccgagctc gataaatcaa tgaagacact agttaagttc      4620
     actcaaaatc actacatgtc atcgcaagtc caacaagtgc aaaagcatga acaatgtgaa      4680
     aaatcagttc aaaagttatc tccattcctt gatgaggatg gtttgatgcg agtgggggga      4740
     cgtatagatg aagcgaagct atcgccatca gcgttacatc ctctgctttt accgaaacag      4800
     tgtcctattt ctcgactgat tgtcgaccat tttcatttga aatatcttca ttgtggtccc      4860
     cgtaccctac aatctttaat tcaaagaaaa ttctggattg tcgggttaag actccttatc      4920
     cgtacggtac tttcaaaatg tgtccgttgc ttcaaaaata gaccaatttc cataacaccc      4980
     ttgatgggta agttaccagc ggctcgagtc caaccctccc gatgttttca aaccacgggc      5040
     attgatttcg gtggaccatt tatagttaga gagagtcgtc gccgtggagc aaaatcttat      5100
     aaggcatatg tttgtctatt tgtctgttta agtackaagg ccgttcactt ggaagccgta      5160
     actgaattga gcgccgaagc attccttgct gctctagacc gatttgtgtc tcgcagagga      5220
     atgtgtcaca caattgtcac tgataacggg acaaattttg ttggggcaaa taggtatctg      5280
     aacgaaattg tcgacgaact ccgtaaacat taccctgata ttgctgacgg tttagccacc      5340
     cgtcaaatta actggcaatt caaccctcca ggcgcacctc acttcggagg tatatttgag      5400
     agtggtatca agtccacaaa atatcatctt aaacgtgttg taggtgccca agttcttacc      5460
     ttagaagagt tttttacaat tcttgcaaaa gtagaagccg ttttaaactc tcggccgctt      5520
     tgtacttcat ctcctgatcc tcaagaatca gatatattaa cgcccggaca ttttctaacg      5580
     ggaggcccta tagtatcttt acctgaagaa cctttaggtg aaacgcgatg tcctcgttct      5640
     cgttggcaaa tgattaagaa gatcacccaa gatttttggc gtgtctggca acgggattat      5700
     cttcacacgc ttcaacagaa gagtaaatgg tattcaaagg cgcctaactt aaaagtagac      5760
     gatttggtaa taattaacga acctaatctt ccgcccttgt tttggaaatt agctcgcgta      5820
     gagcaagttc atgccggttc cgacaatatt gttcgagtgg ttactctccg aactgcaaac      5880
     ggaaaatcta taaggcggcc tgtagtcaag gtctgtcctt tgcctttcaa ttaatttact      5940
     ataatactct cgcgtaaaca atactatttg tttgaaatag tattgttctt taggttaatt      6000
     taattataag tatttcattt attttaagaa ttttcgagca cagcttcttt agggattctt      6060
     caatctgtga aatcctagtg aatttcaagt ggggggaaa                             6099
//
ID   BEL-15_SpEx-LTR repbase;    DNA;    INV; 499 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-499
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6923-6923 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 499 BP; 141 A; 120 C; 106 G; 132 T; 0 other;
     tgtataaaca tcaaaccgat cctgtactta ataatcctat atccaaaata tttcctctcc        60
     taatttaaat ttaccgccaa cattaccggg ctcaaagtac atgcgacagc gtcctacaat       120
     ttatcgatgc gcgcgcagcg cagcgcgcag tggcaggaaa agaaactaat ccaaaaagga       180
     agaatggcgg tttaagcgtc gtcgcgaagt gtccgcaaaa ataattaata ttacatgtaa       240
     aacacctcgc tagtggttca ctgactgttt ttggtgttcg atcaatcctg cctgacttgg       300
     tgatagcaaa caaaactgtg caagttctgt ggttcgagaa atagctggcc ggccggctta       360
     cgccccgtcg ttggtgaagt tcccgtcaac tcccgatctg catccaggtt agtttatgca       420
     ttccctactt gatggtcaca ggatttcgtc aagactaaat tcaggtcaat gcagtggcta       480
     ctccagcgag gttcaatca                                                    499
//
ID   BEL-15_TrNi-I repbase;    DNA;    INV; 6095 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6095
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1022-1022 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..5876
FT                 /product="BEL-15_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MEGKINILKDLQNVIQKALTNVKKCPKDRLTLEYIQA
FT                 RLELLENDWDSFKNTKTQLYGHYKLEDIIGQKVVDIYDSTEDTYITCKCLM
FT                 KSILNKLNVVSESQIPKGGPNNNTGSSKSSNSFVKLPKIAIPTFSGKYSEW
FT                 TTFHDLFISLVHENSSLDNVQKLHYLKSHLTGEAEQLVRHTPISAANYSEC
FT                 WSQLERRYANKKYLTNCILKRLFGQKRINVESASALKELLDTTSDCLSALT
FT                 NLNIDVSTWDVIIIHIVTFKLDNETRKQWELSVSNISSNELPTFQQFQTFM
FT                 ESRFRALECIEPRKAVGHQVSNSSHAHSSKVMIATKSSYIVRCEYCSXPHK
FT                 LCFCKXFAKQSIVSRREFVAKNKICFNCLGSNHTVYDCKKQTSCRVCKKRH
FT                 HSLLHPYGEPENKGQDAAATPMVDSTSSSTSDNPIVTCLSTGKVPKPRQVL
FT                 LATALIKAESKTGEFQTVRALLDPGSQACFITEATVQFLSLKKIPVQGLVS
FT                 GLGNNQSIIAKHMVQFTIKSTVHVDFQLKINAYVLSKITSYLPERCIQPSS
FT                 FDWIDINGLCLADPKFNTPNKIDILLGADVYGYIVKEGIIKSPSGTLMAQN
FT                 TTLGWVLSGVVSSDIDRSRHHIKNITVHNAQFNEDQLLKKFWEIEEQTSTK
FT                 KILSPEEQKCEELYSKTTKRDDTGRYIVHLPFRDDNPECKAGGSREIAEIR
FT                 FKSLEKRLNKNTNLKQRYTEVINEYLQLGHLRAVKSDDNKMNEAVYLPHHA
FT                 VIREDKTTTKVRVVFNASEKNKKGVSLNDTLMVGPTLQADLRHTIMRWREH
FT                 AIGIVADIVKMYRQIRVTEEDVVYQRILWRDDPKKPIKDYELLTVTFGTAS
FT                 APYQAVRTLHQIAYDEGDKYPLAAAKVLNNFYMDDLMTGCDSIEEGVEICK
FT                 QMMELLEKGGFTLQKWNSNNQELADKITSIQQTGQIKNEDNHRDKDKENIL
FT                 LKEKEIQTKNIEIKLDSTIKILGLTWNRLNDTFLYSVNLPPPTSTSVTKRF
FT                 IISDIARLFDPLGWLAPSIVLAKMFIQKLWLTGVGWDEVLSPELVTEWKTY
FT                 REEVSLLTKVRIPRWLGTSSTDDRELHGFSDASKAAYSAVVYLRIIDSTGK
FT                 IQVALLVAKTRVAPIKQISIPRLELCGAVLLSKLLIETAQVLNISKEKITA
FT                 WTDSTVVLSWLNSHPSRWKTFVANRTSEILDTMSSSQWFHVSTKENPADCA
FT                 SRGMLPNLLVNNKLWFSGPTFLKNNIIEYERPKDLNIDLEQTIKVHTTVGP
FT                 EQIIFKNYSSLRKLVRVVAYCRRFFKRNTYNNKYLTSQEIEEALESCIKNV
FT                 QKDIFTIEYTQLKDHGYLKLKSSKLKSLCPFLDKNDVIRVRGRLEKSELTE
FT                 AMKHPIVLPHSSYLTLLIIADAHEKTLHGGPQVMANFLRSAYWIIGARSLV
FT                 QQYVRKCVTCARQKANVRNQLMGSLPSVRCTPARPFLHSGVDYAGPINIRT
FT                 TKGRGHRSYKGYICLFVCMSTRAIHLEVVSDMSTQAFLAAFRRFVSRRGHC
FT                 AKLWSDNGTNFVGASRELQQLASIQPSIAEHLEANHTEWHFIPPHAPNFGG
FT                 LWEAGVKATKFHLKRVIGDATLTYEEMTTLLNQVEACLNSRPISVLNFSDP
FT                 GEPLPLTPGHFLIGESIVNVPDKNYNSSNVSYLTRWQFVQRMLQSFWKRWS
FT                 QDYLSNLMNRYKWSSQVPEPNIGDIVLIKEDDLPPSRWLLGRVVQKHPGDD
FT                 NVTRVVSVRTKFSTIKRPTSKLCVLPVTV"
XX
SQ   Sequence 6095 BP; 2013 A; 1123 C; 1267 G; 1686 T; 6 other;
     tttggtccaa gcgagccgga agtcagaccc ggttaagtct agactttttt ggagtgcagc        60
     ggtgccagct ttggtccgca tcccaagtac tcgcagtgga tcgctgcggc aaagtactgg       120
     gattatagtt caacggatgg ccacagaggg cgccaccgtt atcaagatca gcctccgagt       180
     tgaagaagaa acagcttcgt gcagcaaggt ggacggagcc agtgattgcg gggagttcca       240
     gttcaaagtg acgccataga gggcgccact agcatcgacc agttcaatca gtctacgggt       300
     ttgtgtgatt gaagtgcaac cgtgagtaca attaatcgag caaaaaaaag tagcagtgam       360
     aattaagaag tcaagccaat ttgaacttta tttcaaagga cattttaact ttaaaatttt       420
     gtaattatat atagatattt caacttagtt ttaagactgt gtatatagat aggacttaga       480
     ataattctaa gacctacggg gaacctatgc ccgatttctg aaagagtgaa tttgtakttc       540
     aaacacttgt aaaatttttc ggattctttg agacttcatt cgaattcatt aattktaaaa       600
     cacttcataa attattwaat atcaagaaca tggaaggcaa aattaatata ttaaaagacc       660
     tccaaaatgt tattcaaaaa gctttaacta atgttaaaaa gtgtccgaaa gatagactta       720
     ctttagaata tattcaagca agacttgaat tacttgaaaa tgattgggat tcatttaaaa       780
     atactaaaac tcaactttac ggtcattata aattagagga tataataggt caaaaggttg       840
     tggatattta tgattcaacc gaagatactt acattacatg taaatgttta atgaagtcta       900
     ttcttaacaa gctcaatgtt gttagtgagt cgcaaattcc aaagggcggt cctaacaata       960
     atactggtag ttcaaaatca tccaattcgt tcgtaaagtt accgaaaatt gcaatcccaa      1020
     ccttttcagg caaatacagt gaatggacaa cctttcacga tttgtttata tctttagttc      1080
     acgaaaattc ttcattagac aatgttcaaa aactgcacta tctgaagagc caccttacag      1140
     gtgaagctga acagttggtc aggcatacac caatttcagc tgctaattat agcgaatgtt      1200
     ggtcacaatt agagaggcgt tatgctaata agaagtacct aactaattgt attctgaaaa      1260
     gattgtttgg ccaaaaacgt ataaatgtcg aatcagctag cgcgttaaag gaattgttag      1320
     ataccacaag cgactgttta agtgcgctaa caaatcttaa tatcgatgtg agtacatggg      1380
     acgttatcat catccatatc gtaacgttca aattagataa tgagaccagg aagcagtggg      1440
     agttaagcgt ttctaacatt tccagcaacg aattgccaac ctttcagcag tttcaaacgt      1500
     ttatggaaag tcggtttcgg gcgctagaat gtatcgagcc caggaaagct gtcggacacc      1560
     aggtcagtaa cagttcacac gctcatagct ctaaagtgat gatagccaca aagtcatcct      1620
     atattgtacg ttgcgaatac tgctcggamc ctcacaagct ctgtttctgt aaamaatttg      1680
     ctaaacagtc catagtaagc aggcgcgagt ttgtagcaaa gaataaaata tgcttcaatt      1740
     gtttaggcag caatcataca gtgtacgact gtaaaaagca gacctcctgt agagtttgca      1800
     aaaagcgcca tcattccttg ctgcaccctt acggagagcc agagaataaa ggccaagatg      1860
     cagcagcaac gcctatggtg gatagcacta gttcttcgac tagtgataat cccattgtga      1920
     cgtgcttgtc tacaggtaag gttcccaagc ccagacaggt gttattagct actgcgttaa      1980
     taaaagccga gtcaaagact ggtgaattcc agactgttcg agcccttctt gatccaggct      2040
     cacaagcttg ttttataaca gaagctaccg tccaatttct tagtcttaag aaaattccag      2100
     ttcaagggct tgtttcaggt ttaggcaata atcaatcaat cattgcgaag cacatggtac      2160
     agtttacaat caaatcaaca gtccatgttg attttcaact taagataaat gcctacgtct      2220
     tgagtaagat cacatcatac ttacctgagc gatgtattca accaagttca tttgattgga      2280
     ttgacatcaa cggtctgtgt ttggcagatc ctaagttcaa cacacccaat aaaatagaca      2340
     tattattggg tgcagatgtt tatggttaca tcgtcaagga aggcataatt aagagtccgt      2400
     ctggtactct tatggcacag aacaccactt tagggtgggt cctttccggt gttgtcagtt      2460
     cggatattga taggtcaagg catcacatta aaaatataac cgttcataat gcacagttca      2520
     acgaagatca actcctgaaa aagttttggg agatagaaga gcaaactagt acaaagaaaa      2580
     tcttaagtcc agaagagcaa aaatgcgaag aattatatag taaaactact aagcgagatg      2640
     atacaggaag atatatagta cacttaccgt tccgcgatga taatcctgaa tgtaaggccg      2700
     gaggttctcg tgaaatagct gaaataagat tcaaatcgtt agaaaaaaga ttaaataaga      2760
     acacaaattt aaaacaaagg tatacagaag taattaatga gtatttacaa ttaggacatt      2820
     taagagctgt aaaaagcgac gataataaaa tgaatgaagc ggtttactta ccccatcacg      2880
     cggttattag agaagataag accacgacga aggtacgtgt tgtgtttaat gcttctgaaa      2940
     aaaataaaaa gggagtatcg ctcaacgaca ctctgatggt tgggccgaca ctacaagccg      3000
     acttgaggca tacaattatg cgatggagag aacatgctat tggtattgtg gcggacatcg      3060
     ttaaaatgta ccgtcaaatt agggtaactg aggaggacgt cgtatatcaa agaatactct      3120
     ggcgtgatga tccaaaaaaa ccaataaagg attatgagct gctaacggtg acttttggaa      3180
     cagcctcggc accgtatcag gcagttcgaa cactacatca aatcgcatac gatgaaggag      3240
     acaagtatcc tctggcggct gctaaagtct taaataattt ttatatggac gatttaatga      3300
     ctggatgtga tagtatagaa gaaggcgtag aaatctgtaa acaaatgatg gaattactgg      3360
     agaagggtgg ctttacattg cagaagtgga acagtaacaa tcaagaatta gctgataaga      3420
     ttacttcaat acagcaaaca ggtcaaataa aaaatgagga caatcatagg gataaggaca      3480
     aagagaacat attattaaag gaaaaagaaa tacagaccaa gaacatagaa attaaactag      3540
     atagtactat aaaaattctg ggacttacct ggaaccgctt aaatgatacc ttcctatact      3600
     cggtgaatct cccgccgcca acatctacat ctgtaacaaa aagatttata atatccgaca      3660
     tagctcgctt gttcgatcca ttaggttggt tagcgcctag tatagtccta gcaaagatgt      3720
     ttattcagaa gttatggctg acaggtgttg gttgggatga agttttaagc cctgaattag      3780
     taactgagtg gaagacttac cgcgaagagg tgtcattact taccaaagtg cggatacctc      3840
     ggtggcttgg tacaagttcg actgacgatc gggagctgca cgggtttagt gacgcttcca      3900
     aagctgcgta ttcagccgta gtttacttga gaattatcga ttctacaggt aaaattcaag      3960
     ttgcgttgtt ggttgcaaaa actcgagtag cccccattaa gcaaataagc attccacgct      4020
     tagagttatg tggtgcagta ctgctatcaa agcttttgat agaaaccgca caagtactca      4080
     atatttcaaa agagaagata acagcatgga ccgattctac agtggtacta tcatggctta      4140
     acagccatcc tagcaggtgg aaaacctttg tagcgaatcg gacctctgaa atattggaca      4200
     caatgagttc atctcaatgg tttcacgtct caaccaaaga aaaccctgca gactgcgctt      4260
     ctaggggaat gctacctaat ttattagtta ataataaatt atggttttct ggacctacat      4320
     ttctaaaaaa taatattatt gagtacgaaa ggccaaagga tttaaatata gacttagaac      4380
     aaacgataaa agtacacaca actgtcggtc cagaacagat tatattcaaa aactattcat      4440
     cgcttagaaa gttagtcaga gtagtcgcat attgtcgaag attttttaaa aggaacactt      4500
     ataataataa atatttaaca agtcaggaaa tagaagaggc tttagaaagc tgtataaaaa      4560
     atgtacaaaa agacatattt acaatagaat atacacaatt aaaagatcat ggttatttaa      4620
     aattaaaatc tagtaaattg aaatcactct gcccttttct cgacaaaaat gacgtgataa      4680
     gagttagggg tagacttgaa aagtccgagc tgactgaagc gatgaagcat cccatagtct      4740
     taccacattc cagctatctt actctcctga taattgctga tgcgcatgag aaaactctgc      4800
     acggtggacc tcaggtgatg gcaaactttt taaggtcagc ctattggata ataggtgcta      4860
     gaagtctggt acagcaatat gtacgcaaat gtgtcacatg tgccagacag aaagcaaacg      4920
     ttagaaacca actgatgggt tccctcccat cagtccgctg tactccagcg agaccatttt      4980
     tacatagcgg agtagactat gctgggccta tcaatataag gacgacaaag ggacgtgggc      5040
     accgttccta caaagggtac atatgcttgt ttgtgtgcat gtccactcgc gctattcatt      5100
     tggaagtcgt cagcgatatg agcacacaag catttttagc tgcgtttcgt cgatttgttt      5160
     cgagacgagg tcactgcgct aaattatgga gcgataacgg caccaatttt gtaggtgcat      5220
     ccagagagtt gcaacagttg gcatctattc agccgtctat cgcagaacac ctggaggcca      5280
     accatacgga gtggcatttt atcccgccgc atgctcccaa tttcggtggt ctttgggaag      5340
     cgggggtaaa agctactaag tttcacctta aaagggttat tggcgacgct acactcactt      5400
     acgaggaaat gactacactc ctcaatcaag tggaagcctg cttgaattcg cgaccgatta      5460
     gcgttcttaa ttttagtgat cctggtgagc ccttgccttt aaccccagga catttcctta      5520
     tcggagaatc tatagtgaat gtacctgaca aaaattataa tagttcaaat gtaagttact      5580
     tgactaggtg gcaattcgtt caaaggatgt tacagtcatt ctggaaacgc tggtcacaag      5640
     actatttgtc gaaccttatg aatagataca aatggtcttc tcaagttccg gagcccaata      5700
     taggagacat cgtattaatt aaagaagacg acttaccacc aagtcgctgg ctattaggtc      5760
     gtgttgtaca aaagcaccca ggtgatgata atgtcacacg tgtagtctca gtgcggacta      5820
     aattctcgac catcaaaaga ccaacgtcaa agttatgcgt tttaccagtt acggtttaat      5880
     gttacatagt tagtccattt tatttacaat atttttatgt atgtttagac caaaaaggga      5940
     tttttattta gcgttagttg tgtttagtta tattattaat atttaaggtc tacatgttaa      6000
     gttcatgtat tttaagttca aaataccatc ccataagttc atcgtcattg tacttaagaa      6060
     ggacattccg tcaataatgt ccttggtggg cggta                                 6095
//
ID   BEL-15_TrNi-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-15_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-203
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1050-1050 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 203 BP; 62 A; 34 C; 38 G; 69 T; 0 other;
     tgttcaagag caaaatgtat tataatagta attagttaaa ccatagcgcg atagatggca        60
     ttgacgtcga attagatcgc gctatggttt cgttacatga gttgacatat acattttgaa       120
     acattttcaa tatatgactc tctcgcagac caaacagtgt tgttttaatt tatcagtgca       180
     gttcttcagc tcggtgctta aca                                               203
//
ID   BEL-160_AA-I repbase;    DNA;    INV; 6261 BP.
XX
AC   supercont1.160;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-160_AA_;
KW   BEL-160_AA-LTR; BEL-160_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6261
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.160; Positions  676593  670333.
XX
CC   'CCTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..6189
FT                 /product="BEL-160_AA-I_1p"
FT                 /translation="MTGHHDQSMYQCKTCHETDSADAHMIICDQCRQWEHF
FT                 RCAGISEASRSRPFICKQCGTGATGTQRVLRSKTKGNQLTNPSVGGALSQK
FT                 GSKISSVRSFSSRSSVVKAQLELAEEEARMKQKELEEEQELKHLELEEEKK
FT                 QLAEKKKLLEEEARLRQRALEASRERLAKQQSIRRESLEKRNEILLQISER
FT                 GSVLESTTSSVEKVSKWLTAHPQGGMTEENITGAPSDPLLPTPNEQQGEVS
FT                 NALAQPLQTGVRSSQTHDFPLQPSYQEARNIRPLDTFRPGLRAQAAPVIDE
FT                 KLPLPRTVIPREVHSVTVKEPFQQYIASSHPLRDPRSFSPAKPPNFVKTYS
FT                 IPAVNHHVGLPPSDSGDQIRQMHQQAPVWSTPVQHEPVLGPKSFSHRLLTP
FT                 ATELPFPYRNSLPNFDATREGVISGAVRNPLETVLDDGVLNSQKIAARQVV
FT                 GKDLPSFNGNPTDWPMFITSFEQSTAACGFSNAENLVRLQRCLTGHAREAV
FT                 RSRLLLPANVPHVIETLRTLYGRPELLIRSLHEKIRKTPGPRHDRPETILE
FT                 FGLVVQNFVDHLLAAQQGEHLSNPMLLQELVEKLPGPMRMDWAVFKGQQPR
FT                 ATIVLFGEFMSKLVKAASEVSFELPGLFKDLNDGKHQRAKERVRIQTHSTE
FT                 EKSTFKLANSGSRKAPKPCAICDREGHRVAECSKFKQLTVDNRWKLVQNKG
FT                 LCRTCLNNHGKWPCKSWQGCGSEGCHLKHHTLLHSPSTPPSSSHSVNVSLS
FT                 QSSSEEYRTLFRVLPVVLHGKGKSVTIFAFIDEGSQITMLEEKVAKELGVT
FT                 GPTRPLTLQWTGDIKRDESKSQEVSLQIAGKNSGTRYDLRHARTVSCLLLP
FT                 TQSLNYRELCVRFPHLKGLPVEDYDLVQPKLLIGLDNLRLGVPLKLREGGP
FT                 YDLIAAKCRLGWGIYGSSSTNPVPRVRVNFHTAAQPSSDDLLNVQLRDYFA
FT                 FENCGVVAPTEKLESEEDKRARKLLEETTRRTAKGFETGLLWKTDDREFPD
FT                 TYPMALRRMKTLEKKLQRDPLMMQRVREHIIEFEKKGYIRKVSKEEQSTFD
FT                 HRKSWFLPLGVVVNPKKPGKLRIIWDAAAKVDGVSFNSHLIKGPDLLTPLP
FT                 RVLSGFRLYPVAVSGDIREMFLQIGLQASDRNAQMFLFRDHPQDPVQIYAV
FT                 NVTMFGSTCSPSSAQYVKNVNAEQHALHYPRAATAIIEHHYVDDYLDSFRT
FT                 VDEAVQIVRDVKFVHSRGGFEIRNFLFNKDEVLRRTGDIETNTSKEFALVR
FT                 AETTESVLGMKWIPTDDVFTYTLAMRNDLMPILDDNHVPTKREVLRVVMSL
FT                 FDPLGFVAYFLVHGKVLMQDIWASGIDWDDKIGEELFLRWQQWIRYFPQLD
FT                 NIRIPRCYFQPPFPADFDRLELHVLVDASDSAYACVAYYRLETESGVQVVL
FT                 IGAKTKVAPLKALSIPRLELNAAILGSRLLDTIQGYHAYPINRRFLWSDSS
FT                 TVLAWIRSEHRRYNKFVAVRVGEILTTTNANEWRWIPSGVNTADIATKWKN
FT                 IPDLSYDSPWFRGPSFLRKSEEHWPQQKKITPTTEELRSIHVHFSMYPMID
FT                 ASRFSKWTKMLRSMAFVVRYVQNLRRKCKGSTLQLGELQQDELKCAEEMLW
FT                 KVAQAEAFPEEIATLSDSQGLQNARPGRVSKASTIYKNWPFLDERGVLRMR
FT                 GRIGAASFASAEAKYPAILPRQHLITFLLTDWYHCRFRHANRETVVNEMRQ
FT                 RFEIAKLRALIQKVSKNCMICRVSRATPNPPAMAPLPASRLQPFVRPFTFV
FT                 GLDYFGPVLVRVGRSQVKRWVALFTCLTIRAVHLELVHSLSTESCIMAVRR
FT                 FIARRGPPAEFYTDNGTCFQGASNQLEKEKTEARNNSLAAKFTSSKTQWRF
FT                 IPPAAPHMGGAWERLVRSVKVALGSVAEASRIPDDEVLETALLEAEALINA
FT                 RPLTYIPLESADQESLTPNHFLLGSSSGDKVAPFDPIENPAVLRSGWRLAQ
FT                 SITQVFWARWLKEYLPVITRQGKWFEESPNIAVGDLVLVVGGTARDQWVRG
FT                 RIETVIPGRDGRVRQALVRTASVLDV"
XX
SQ   Sequence 6261 BP; 1723 A; 1549 C; 1573 G; 1416 T; 0 other;
     atcttttaga aagtttgtac gtgggtaatc gatatgacag gacatcacga ccaatcgatg        60
     taccagtgca agacgtgcca cgaaacggac tccgcggacg ctcatatgat catctgtgac       120
     cagtgtcgcc aatgggagca ctttcgatgc gctggaatta gcgaagctag tcgaagtcgt       180
     cctttcattt gtaagcagtg tggaacggga gccactggta cccaacgagt attgaggtca       240
     aaaacgaaag gtaatcagct cactaacccg tctgtgggag gcgctctttc ccaaaagggc       300
     agcaaaatat cgtcagtccg tagttttagt tcccgatcgt ctgtcgtaaa agcgcaactg       360
     gaattggcag aggaagaagc ccggatgaag cagaaggagc tagaggagga acaagaactc       420
     aagcatctcg agcttgaaga ggagaaaaaa cagttagctg agaagaagaa attgttggag       480
     gaagaagccc gattacgaca gcgagcacta gaagcaagta gggagcgact ggcgaagcag       540
     caatcgatcc gtcgagagtc attggagaaa aggaacgaga ttcttttgca gatatccgag       600
     cgtggaagtg tgctggagtc tacgacaagt tcggttgaaa aggtatcaaa atggttgaca       660
     gctcatccac agggagggat gaccgaggag aacattacag gggcgccaag tgatcccctt       720
     ctcccgaccc caaacgaaca acagggagag gtctcaaatg ccttggcaca acctttgcaa       780
     accggagtgc gttcgtccca aacgcatgac tttccattac aaccctcgta ccaagaagca       840
     aggaatattc ggcctttgga cacatttcga ccggggcttc gggctcaagc agcacccgta       900
     attgatgaga agctcccact tccgagaact gtaattcctc gagaagtcca ttcggtaacg       960
     gtaaaagagc cattccagca atacatcgca tcgtcgcacc ctctacgtga tcctcgatcg      1020
     ttttctcctg caaagcctcc aaacttcgtt aagacatatt ctattccagc ggtgaaccat      1080
     cacgttggac taccgccttc cgattctggt gatcagatca gacaaatgca tcaacaagct      1140
     ccagtgtgga gcacgcccgt acaacatgag ccagtactgg gacccaaatc gttctcccat      1200
     cgcttactca cccctgctac ggaactacca tttccatatc ggaactctct tccgaacttt      1260
     gacgctactc gagaaggagt catttccggt gcagtacgca atcccctaga aacggttttg      1320
     gatgatggcg ttttaaactc ccaaaagata gccgcgcgtc aggttgttgg taaagatctg      1380
     ccatcgttca acggaaaccc taccgactgg ccgatgttca ttacctcctt tgaacaatct      1440
     acagctgcat gcgggttttc aaacgcagag aatttggtac gtctacaacg atgcctcaca      1500
     ggccatgctc gagaggcggt tcgaagcagg cttttgcttc cagccaacgt gccgcacgta      1560
     attgagacat tgcgaacgct ctatggacgt ccagaactat tgattcgttc gctccacgag      1620
     aagataagaa agactcctgg acccagacac gatcggccgg aaacgatact cgaattcgga      1680
     ctggtagtcc aaaacttcgt tgatcatctg ctagctgcgc aacaaggaga acatctttca      1740
     aacccgatgc ttctacagga actagtagaa aagcttccag ggccaatgag aatggattgg      1800
     gccgtcttca aaggtcaaca accgcgggct acaattgtgc tgttcggtga gttcatgtcc      1860
     aaactggtaa aggcagccag tgaggtcagt tttgaacttc cagggttgtt caaagactta      1920
     aacgacggta aacatcagcg agcgaaagaa agagtcagaa tacagacgca ttccaccgaa      1980
     gaaaaatcaa ccttcaagct agccaacagc ggtagccgca aagcaccgaa gccgtgtgcg      2040
     atttgcgatc gcgaaggcca cagggtggca gaatgctcga agttcaagca gttgactgta      2100
     gataaccgat ggaagttagt gcaaaacaaa ggtttgtgca gaacgtgcct gaacaaccac      2160
     ggaaagtggc catgtaaatc ttggcaaggt tgtggtagcg aaggatgcca cttgaaacac      2220
     cacacgcttc ttcattcgcc gtctactcct cccagttctt cgcactcggt gaacgtatcg      2280
     ttgagccagt cttcatctga agaatatcgg acactctttc gagtgttacc cgtagtcctc      2340
     cacggaaagg ggaaaagtgt gacgatcttc gcgttcattg atgaaggatc acaaattacg      2400
     atgttggagg agaaagtcgc gaaggagctc ggcgttaccg gtccgacaag gcctctcacg      2460
     ctccagtgga cgggggatat aaaacgcgat gaatcaaaat ctcaggaagt cagcctgcaa      2520
     atagcaggaa aaaatagtgg tacacgttat gatcttcgtc atgcacgcac agttagctgc      2580
     ttgctactac caacccaaag cctgaactac cgagaactgt gcgtccgttt ccctcatctc      2640
     aaaggcctgc cggtggaaga ttatgatctc gtgcaaccaa aactgctcat tggtttagac      2700
     aatcttcgac ttggagtacc gctaaagttg cgtgaaggag gaccatacga tcttattgca      2760
     gccaaatgcc gtttgggatg gggaatctat ggtagttcgt ctacaaaccc cgtaccaaga      2820
     gttagagtca actttcacac tgccgcacag ccgtcctccg acgacctgct caacgtacag      2880
     ttgcgagact acttcgcatt cgagaactgt ggggttgttg ctccgaccga aaagctagaa      2940
     tccgaggaag ataaacgagc aagaaagttg cttgaagaaa cgacgcgacg aactgcaaaa      3000
     ggatttgaaa caggccttct gtggaaaact gatgaccgag aatttccaga cacgtatcca      3060
     atggcacttc ggcggatgaa aaccttggag aagaagctgc agcgagaccc gttgatgatg      3120
     cagcgagtac gagagcacat aattgaattt gagaaaaagg gctacattcg caaggttagc      3180
     aaagaagagc aatccacctt cgatcaccgg aaaagctggt ttcttcccct gggagttgtc      3240
     gtaaacccga aaaaacctgg gaaattaaga attatctggg atgcggcagc gaaagtcgat      3300
     ggagtatcgt tcaactcaca cttgataaaa ggcccagatc tcctaacgcc tttgccgcga      3360
     gttctcagtg gtttccgttt gtatccggtg gcggtttccg gagatataag ggagatgttc      3420
     cttcaaatag ggctacaagc aagtgatcga aatgcgcaaa tgttcttgtt ccgcgatcat      3480
     cctcaagatc cggtgcaaat atatgctgtc aacgtcacaa tgttcggatc gacctgttct      3540
     ccttcgtcag ctcagtacgt caagaacgtg aacgctgaac aacatgcttt acactaccca      3600
     agggcggcga ctgcaattat agaacaccat tatgtcgacg attacttgga cagcttcaga      3660
     acggtggacg aggctgttca gatcgtaagg gacgtcaagt ttgttcactc caggggcgga      3720
     ttcgaaatcc gcaattttct cttcaataag gacgaagtcc tccggcgaac tggggacatc      3780
     gaaacgaata cgtctaaaga attcgccctc gtacgggcag aaacaacaga atcagtgctc      3840
     ggaatgaagt ggattcctac cgacgatgtt ttcacttata ccttggctat gcgaaacgac      3900
     ctgatgccaa ttctcgacga caaccacgtt ccaacgaagc gggaagtgct tagggtggtg      3960
     atgagcctgt ttgaccctct tggtttcgtt gcatacttcc tggtgcatgg taaggtgcta      4020
     atgcaggaca tctgggcatc aggtatcgat tgggacgaca aaataggtga agaacttttt      4080
     ctccgttggc agcagtggat acgctacttt ccgcagttag ataatatacg tattccacga      4140
     tgctattttc aacccccttt ccctgcagat ttcgatcgac tcgagctcca cgtgctggtc      4200
     gacgccagcg attctgcata tgcatgtgtc gcttactatc gattggaaac tgaaagcggc      4260
     gttcaggtgg tgctgattgg tgccaaaacc aaagtagcgc cgttaaaggc gttgtccatc      4320
     ccgcgcctgg agctaaacgc tgcgatctta ggaagccgcc tactggacac catccaaggt      4380
     tatcatgcgt atcccattaa ccgcaggttc ctctggagtg attccagtac agtgctagcc      4440
     tggatacgat ccgaacatcg cagatacaat aaattcgtcg ctgtacgagt tggtgaaatt      4500
     ctaacgacca ccaacgccaa cgaatggaga tggattcctt ccggtgtaaa cacagcggat      4560
     attgccacta agtggaagaa tattccagat ctttcctacg acagcccgtg gttccgcggc      4620
     ccttcctttc ttcgtaagtc ggaagagcac tggccgcaac aaaagaaaat tactccaacg      4680
     accgaagaac ttcgttccat ccacgtccac ttctcgatgt acccaatgat tgacgcttca      4740
     cggttcagta aatggacaaa aatgctacga tctatggcct ttgtagtgcg atatgtccaa      4800
     aatctgcggc gtaaatgtaa aggttccacg ttgcagttag gagaacttca acaagacgaa      4860
     ctgaagtgcg cagaagaaat gctctggaaa gtagcccaag cagaggcgtt tcctgaagaa      4920
     atcgccaccc tctcggactc tcaaggactt caaaatgctc gaccgggacg cgtttctaag      4980
     gccagtacaa tctataaaaa ttggcccttc ctagatgaac gcggtgtgct gcggatgcgc      5040
     ggaagaatcg gagctgcaag tttcgcttca gccgaagcta agtacccagc gattcttccc      5100
     aggcaacatt taatcacgtt tcttcttaca gactggtacc actgccgatt ccgccacgcc      5160
     aacagagaaa ctgtcgtcaa cgaaatgcgt caacggttcg aaatcgccaa attacgagca      5220
     ttgattcaaa aggtttccaa gaattgtatg atatgtagag tttcaagagc cacccctaac      5280
     ccgccggcga tggcaccact tcctgcgtcg cggctacaac ccttcgtacg tcctttcaca      5340
     tttgttggac tagattattt tgggcctgta ttggtcagag tcggccgcag tcaggtgaaa      5400
     agatgggttg ctctcttcac ctgtctcacc atccgagctg tacacttgga actagtccac      5460
     agcctatcca ccgaatcctg cattatggca gtacggcgct tcattgcacg ccgtggccca      5520
     cccgcagaat tttataccga caacggaacg tgttttcaag gcgccagtaa tcagctagaa      5580
     aaggagaaga cagaggctcg gaacaactcg ttagcggcaa agttcacgag ttcaaaaacc      5640
     cagtggcgct tcatcccacc agcagcacca catatgggag gcgcctggga gcgccttgtc      5700
     cggtcggtca aagtagcgtt agggtcggtg gcggaggcat cccgcattcc agatgacgag      5760
     gttctagaaa ccgccctact agaagcagag gccctaatca atgctcgtcc tctcacttat      5820
     ataccccttg aatcggctga ccaagaatcc ctcaccccaa atcattttct tttgggatct      5880
     tcgagtgggg acaaagtggc accctttgat ccaatagaaa accctgcggt gctacggagc      5940
     ggttggaggc tcgcgcaatc cattacgcaa gtattttggg ctagatggtt gaaagagtat      6000
     cttccagtga tcactcgtca agggaagtgg tttgaagaaa gcccgaacat agctgtaggc      6060
     gacctggtgc tggtggttgg cggaacggca agggaccagt gggtgagagg acgtatagaa      6120
     acggtgatcc ctggacgcga cggaagggtg cgtcaagctc ttgtgcggac agcatcggtt      6180
     ctcgacgtgt gaaaggatta tgaacccata ccgagagttc ctgagcaaca gaacttggac      6240
     cagggttcac gggacggggg a                                                6261
//
ID   BEL-160_AA-LTR repbase;    DNA;    INV; 724 BP.
XX
AC   supercont1.160;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-160_AA_;
KW   BEL-160_AA-I; BEL-160_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-724
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.160; Positions  670332  669609.
XX
SQ   Sequence 724 BP; 264 A; 117 C; 129 G; 214 T; 0 other;
     tgtcacgacg agacccccag ttttgagtca actgtggccg actagttggt tggtcttagg        60
     tgtatacggt tcaacgattg tcagtgattg agcgtatgga acgtcattga aattggagaa       120
     acggagaagg acaaaaacaa tgataaagct ttttggcaag tggtattacg attacgagcg       180
     gattgaatta gaaaaatatc ctagctaaat taaatataaa gacaaagtta tgtttgaatt       240
     atcttaccta tattattaat acaaagtgag taattatcct aaaacttaat tacatctaag       300
     tacgatagat tgcgaaggta tcatgcatta cttattatta gtactttgag aattcgttat       360
     tcacacatat tcacttaaat ctagataaaa atactattta caagcgtcag cgtagtttgc       420
     agtcgtggaa accgattaac ttaattaatt gcggatagaa gtatattgaa atcagaattg       480
     taagtacatt aaacctaaat attaataatg taacctaaaa tttgccaatt catacagtgc       540
     accctaaatt cggtaccgat agagtcgcga tacgatccgt gaaatcgaaa ggtcaccaaa       600
     ctttgtaagt agtagtaaaa ataatgaaat attaatctaa taaaatacta ttttagctaa       660
     aagctaaccg acagcacaaa cgcggtttgc tatatagatc ttggacgatc ccacccccac       720
     aaca                                                                    724
//
ID   BEL-161_AA-I repbase;    DNA;    INV; 3133 BP.
XX
AC   AAGE02024744;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-161_AA_;
KW   BEL-161_AA-LTR; BEL-161_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3133
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024744; Positions   49603   46471.
XX
CC   'GTAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..3089
FT                 /product="BEL-161_AA-I_1p"
FT                 /translation="MPNSTRSTRSRNAKVCCQACNDPDNDQMVSCNICGSR
FT                 WHSACVNYSDISGQDLAFVCPKCQKSPAVVHAAVSSVGCKSLNKAGSKTSS
FT                 ISTRASSRTKKARLQLEQLEAQKALAMKRLELELREQERKLEHQTKEAEVL
FT                 LQHRLEQEKQRKEIEIEQRQLELEQTILEESFRLREIIALDDDEEEDDGKS
FT                 VISEQSTFSKVNKWKTLSSTMVASTGRVHETGLNNDEAATGTRMPYRQKGT
FT                 QHPSSITQGVLETALAGISLGQSYLEPSLGGLIGRTENTILPVVKENPLFV
FT                 SQPANPIGSTQLATNNISQTNILLDPARSSFSQQPTHNCPPAVAHPGGVCQ
FT                 RNEEEMLRRPLPPRTMDGYVPTRTQLEQRLPISFEPQRSFGQQQHSTIRQN
FT                 REQPESSELPADWEGPSARQLAARQVMARDLPTFSGNPEDWPLFISSYNNS
FT                 TRACGFSDVENLARLQRCLKGHALESVRSRLLMPAGVPHVIATLETLYGRP
FT                 ELIIHTLLQKIRNVPSPKQDRLETLIAFGMAVQNLSDHLEAGRQLAHFNNP
FT                 MLLFELVEKLPAHMKLDWSLYKQRFADANLRTFSQYMQTLVRAATDVTMHY
FT                 DPTQNLQRMSKEKLCKEKTFCGAHSKDDTLEGMSREEEDQDMIHPVVPACL
FT                 ICKNPDHRVKDCVEFDRKTIDERWKLTQQLGLCRLCLGAHGKRPCKVRKQC
FT                 DFEGCQRRHHPLLHSCPDPRDVRTNSKPNEVNAHKDGDDQTSCEIMPSGSQ
FT                 AITNHHSTDKKTLFRIIPVTLYGNNRSISVYAFLDDGSEKTLIDEEVIKEL
FT                 GVVGEPQKLCLQWTANVKRAEINSKRVNLEISGNNPDTRHLLTGARTVRNL
FT                 DLPKQSLRFAELAREFPYLKGIPVEGYRDAIPKILIGNDNAHVTSTLKIRD
FT                 GQPGEPIAAKTRLGGTIYGYNQDNLEANTYSFHIREYALEKTIKGAVGLDE
FT                 VEEESSSKGVYVGDTSQLRGPSCDCSNDILITKGKGYCCRVRGNLLKSGNR
FT                 WFGKKVNASVTKPLE"
XX
SQ   Sequence 3133 BP; 990 A; 682 C; 761 G; 700 T; 0 other;
     atctaaaaga ctgagatcgc atcagcatgc cgaatagcac gagaagtacc cgcagtcgca        60
     atgctaaggt gtgttgccaa gcctgcaatg atccggacaa cgatcaaatg gttagctgta       120
     atatttgtgg ttcgcgatgg cattctgcct gtgtgaatta cagcgatatt tcgggacagg       180
     atctggcgtt cgtttgtccc aagtgccaaa aatcaccagc cgtagtacac gctgcagtta       240
     gttcagttgg ctgtaaaagt ttaaataaag ctggaagtaa aactagttct atttcaacac       300
     gcgctagctc acgtacgaaa aaagcccgcc tacagcttga gcaactagaa gcccagaaag       360
     ctttagcaat gaaacgtctg gaactggagc tccgagagca ggaacgtaag ttagagcatc       420
     agaccaagga agctgaagta ttactacagc atagacttga gcaggagaag cagcgcaaag       480
     aaatagaaat agaacagcgg cagctagaac tggagcagac catattggaa gaatctttcc       540
     gtttgcggga aattattgca ctagatgatg atgaagagga agacgatggc aaaagtgtta       600
     tctctgagca aagcacattc agtaaagtga acaaatggaa aaccttaagt tccacaatgg       660
     tagcctcaac aggaagggtt cacgaaactg gcctgaataa tgacgaagca gcgactggga       720
     ctagaatgcc atacaggcag aaaggcactc agcatccgtc tagcatcaca cagggtgttc       780
     tagaaacggc gttagcgggt atttcattag ggcagtcata tctagagcca tctcttggag       840
     gactaattgg tcggactgag aacaccatat tgccggttgt taaggaaaat cctctcttcg       900
     tttcccagcc tgcaaaccct atcggctcta ctcagttagc cacgaacaat atatctcaaa       960
     ccaacattct cttggatcca gctcgttcat cgttcagcca acaaccaacg cataattgcc      1020
     ccccggctgt tgcacatcca ggtggtgtct gtcaacgaaa tgaagaagaa atgttgagaa      1080
     gaccacttcc accacgaaca atggatgggt acgtaccaac caggacacag ttggaacaga      1140
     gacttccaat atcattcgaa ccacagcgat ctttcggtca gcagcaacac tcgacaatcc      1200
     ggcaaaaccg agagcagcct gaatcatctg aattgccagc ggactgggag ggaccatccg      1260
     cacggcaatt ggccgcaaga caggtgatgg ccagagactt gcctacattt tcgggtaatc      1320
     ccgaagactg gccgttgttc ataagctctt acaataactc gacaagagcg tgtggcttct      1380
     cagatgtgga gaatttggcg aggctacaac ggtgcttaaa agggcacgct ttagagtcag      1440
     tgcgaagccg actgttgatg ccagctggtg taccgcacgt tatcgctact ttggaaacat      1500
     tgtatggcag accggaattg attattcaca ccttgttgca gaagattcga aacgtgccat      1560
     caccgaaaca agataggctt gagactctca tagcatttgg aatggcagta caaaatctca      1620
     gcgaccatct ggaagccgga agacaattag cacatttcaa caacccgatg ctactattcg      1680
     agttggtaga gaaactccca gcgcatatga aacttgattg gtcgctatac aagcaacgtt      1740
     ttgctgacgc gaatcttcga acgttttcgc aatacatgca aacgttggtg cgagctgcta      1800
     cagatgtaac catgcactac gatcctaccc aaaatctaca gcgcatgtcc aaggaaaagc      1860
     tttgcaaaga gaagacgttt tgtggtgctc attcgaaaga tgacacacta gaagggatgt      1920
     cacgagaaga agaggatcag gatatgattc atccagtagt accggcgtgc ctaatatgca      1980
     aaaatccaga ccatcgcgtg aaagactgtg tcgaattcga taggaaaaca atcgacgaac      2040
     gctggaagtt gactcagcaa ctgggtttgt gtcgactatg tctcggtgcc cacggcaaac      2100
     gtccttgcaa agtacgcaag caatgtgatt ttgagggatg tcaaagacgt caccacccgt      2160
     tgttacattc gtgtccagat ccaagagatg taagaaccaa cagcaaaccc aacgaagtaa      2220
     atgcccataa ggacggagat gatcaaacat cctgcgaaat aatgcccagt ggttctcaag      2280
     caattactaa tcaccatagc acggataaga agacactttt ccgcatcatt cccgtaacac      2340
     tatacggaaa taatcgctca atatcagttt acgccttttt agatgatgga tcggaaaaaa      2400
     cgttaatcga tgaagaggtg ataaaagagc taggtgtagt aggagagccg caaaagctgt      2460
     gtctgcagtg gactgctaat gtgaaaaggg ctgagattaa ctcaaaacgt gtgaatctag      2520
     aaatcagtgg aaataatcct gatactagac atcttctgac tggagcacgt actgtgagga      2580
     atttggactt gccgaagcaa tcactgagat ttgcagaact cgcaagagag ttcccttatc      2640
     tgaaaggtat accagtcgaa ggataccgtg atgcaattcc aaaaatctta ataggaaacg      2700
     acaacgcgca cgtgacgtcg acgctaaaga tccgtgacgg ccaacctggg gagccaattg      2760
     ccgccaagac acgtttaggg gggacgatat atggatacaa tcaagacaat ttggaggcaa      2820
     atacctacag cttccacatt cgagaatacg cactagagaa aacaataaaa ggtgctgtgg      2880
     ggttggatga agtagaagaa gaaagtagta gtaaaggagt ttacgtgggt gatacatctc      2940
     aactgcgagg accttcttgc gattgtagca acgatatact gatcaccaaa ggaaagggtt      3000
     attgttgtag ggttagggga aacctactta aatcaggcaa tagatggttc ggtaagaaag      3060
     ttaacgcttc tgtaacaaaa cctttggagt aaagctagat cggacccctt tctagcctta      3120
     cgggtcgggg aaa                                                         3133
//
ID   BEL-161_AA-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   AAGE02024744;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-161_AA_;
KW   BEL-161_AA-I; BEL-161_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-485
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024744; Positions   46470   45986.
XX
SQ   Sequence 485 BP; 143 A; 76 C; 102 G; 164 T; 0 other;
     tgttgcggta acttgcgccg taccctatga gtggtgaaag agagcatcaa ccatatccat        60
     atctctgaca agtcgcattg aactgttgta gagatagccg tgtattgtgt tgcttccatt       120
     gctgcatcta ttagcgttgt aattatttgc ctaaatctgc cggttaacag gaattatttg       180
     gtccaccata ggttgtaggg taataaagat cgtgcttggt gcctgtaaag taagaactaa       240
     aaaatactga aaaacaagta aaatatgtaa ttcatcaaaa tatttacagt ttgattcaca       300
     cattgaattt ggtgtcagtt ggttggagtt ttaaggagta ggatctgacc agtgtgagta       360
     actttattgt tgttgtgatt gcaaatactt attattaaat gattaaatat agcttttagc       420
     gtttctggat tcaacatttg gtgtagtttc ttgctgaaaa gagtcccgaa tactcctacc       480
     caaca                                                                   485
//
ID   BEL-162_AA-I repbase;    DNA;    INV; 6076 BP.
XX
AC   AAGE02022918;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-162_AA_;
KW   BEL-162_AA-LTR; BEL-162_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6076
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022918; Positions   89423   83348.
XX
CC   Positions [5102-5695] - Integrase core
CC   'CAAGC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1890..4415
FT                 /product="BEL-162_AA-I_2p"
FT                 /translation="MDQIVSAASDVIFVNYADGPGGKQEKPKAKEKTYINT
FT                 HAVEEKREENVNSGDRKDKSKPCAACRKDGHKIRDCYAFRKMTLGDRWKLV
FT                 REQYLCRRCLGSHGKFPCKASNCGENGCEERHHKLLHPGNPHTATDPPKTT
FT                 STVTVHRQFNQSVLFRILPVSLHGNGKTIETYAFLDDGSSRTLVETKVAEE
FT                 LGVVGDVHALCLQWTSGIERVEDESQLIKLQISGVPNGTRHDLKEVHTVKS
FT                 LNLPVQSLDFGELCKQFPHLQGLPVQSYTNAVPTILIGLDNSFVMATRKSR
FT                 EGPKGSPIAAKTIIGWTVYGSSAAETGQPCSHQLFHISVRSPDQELHDLVK
FT                 VFFALESVGSDEDRRGKQILETTTVRTVFGRFQTGLLWKYDNVKFPDSRPM
FT                 AEKRFRCLERRLASNPELYDNVKNQINQYQVKGYSHKASPDELASFNPKRT
FT                 WYLPLNVVTNPRKPNKVRLVWDAAAKVQGQSFNSALLAGPDLLAPLPAVLS
FT                 SFRQFEVAISADICEMFHQIKIRPEDRSAQLFLWRDDPSKPFDVFVMDVAT
FT                 FGSTCSPSAARYVKNRNAEEFAEQFPRAAEAITKHHYVDDFLCSVHTEDEA
FT                 VELAEQVRLVHSKAGFTIRNWLSNSSNVLIRVGEQQTESPKKLLIDRSAAY
FT                 ERVLGMIWKPEHDVFVFQGVFREELQVLIQDDSIPTKREVLRVVMSVFDPI
FT                 GLVAVFVVHGKVLVQHIWRLGLGWDERIPATLLEQWKRWIKLLQQLDHVEI
FT                 PRCYFPGYSPEDYRAVELHIFVDASEEAFAAVAYFRIVEGPRVRCSLVSAK
FT                 TKVAPLKLLSIPRLSKTVAENHTIPISRKVFWSDSCTFLS"
FT   CDS           4853..6076
FT                 /product="BEL-162_AA-I_1p"
FT                 /translation="MDGRIASVQQVSFDFKFPVILPKGHEGTKLLVDCYHR
FT                 LYTHCNAETAVNEMCQRFHVSEMRIALKQAGKLCQWCKVYKAVPAIPRMAP
FT                 LQEARTTSHVRLFTYVGLDYFGPMLVKQGRNEVKRWVALFTCLTIRAVHLE
FT                 VVYNLTTESCKMAVRRFIAQRGAPKEIFSDRGTNFVGASRDLKEEIQRITT
FT                 NLANTFTNTDTQRHLNPPYTPHMGGSWERMVRSVKSALASLSTGGKPDDET
FT                 LRTLLIEAESIVNSSPLTYLPIDSEEQEALTPNCFLMLSTSGVNKPAREPI
FT                 EERAIARCNWDLGKVLLDKFWVRWIKEYLPTITKRTKRFKDRKPIEVGDLV
FT                 VVVEDRIRNGWLRGRVLRVFPGRDGRVRNVEVLTASAGVLVQSVAKLAVLE
FT                 VGGTAKIDFERVGG"
XX
SQ   Sequence 6076 BP; 1555 A; 1579 C; 1596 G; 1346 T; 0 other;
     aaactgttta gatttctatg gtgaaatcgc ccggagatgt cgagctctac aaacctcccc        60
     gacgctgggg caccgtcaac gacgcagcag catccagatg gtgtaaacct acagcaggaa       120
     ggcgttctta acctcaactc cggctctcat ccggaaggtt ccgacaaggg tgttaggatg       180
     gacacaccca ttgccccgtc tgtcggtcga tcaaaacgaa gccgttcatc gaagggcttt       240
     acgcgcttcg ctagaactcc agcagctcca ggagcaaaag cgggtggaaa tggaattcat       300
     cgccaaaaag tttgctattc tgcaggccca actggaggat gatgatggaa gcagtcgcag       360
     cagcaagact cgtcgatctt cccatggcag ttcgcagaga actcacgact gggttcaaag       420
     ccaggtaatc ccgactacgt gtagtaccac cgaatcccaa acgattcccg tgatcactca       480
     atcccggact ggcaccattc ccaaggagat tccagcagtg agcaatgtca tggatgaatc       540
     gattgcgctt gccgtgcagt cgttgtccat caatccggtg gaccgagtgg aatcgaacgc       600
     aaaccaacgg acagcacctc tttcgctcca acacgtagtc ggctagccca tctgcaggcc       660
     cgaaacaagg agaaaactgc tgtagtgaag agcgcgactg atggcttagg ggctgcaggt       720
     gaattcacaa cgttttccac ggatcaccag gcgcttccaa ctgcacccaa cttttccatc       780
     tcaccggaaa actcgccgtc ggcactgata gagcagctga gtgacctaca aaagcgtgcg       840
     gacagtctcc aacagcagtt gatggtcggg acaatccgtc agagccatga tttcgatcga       900
     gttccagaac aaactcggca gttccagccg actaagtcat caacagtggt tcgcatcgcc       960
     gccaagtcat cagatgagta acgaccagtg cgtaacgccg cctacgattt cccagtcagc      1020
     gatggtaata ccaaggttac cagtgcggta agtcaaccgt gctctagttc taccgttaca      1080
     tttgccccac aattaaatat tgtgagctcg gtccattcgt cacgtggcga cccgagctga      1140
     tgaaataaat aaaactcccc ctccgaatag cggaccatgc ttgcttcccc ctattctgca      1200
     attcgttccg gttcatatga gtacaccaca agcccattcc actcccccct ccgtgcacac      1260
     agtttcctct cgattgtctc caatcatgtc gtcgatgatt cctacatctg cacccgtcgt      1320
     cgcagctgtg tccgctgcta atgatgttac tcggcggcag cttttcggtg gacccagccc      1380
     acagcaactc gccaccagac aagtcgtgcc cagggagctt cctactttct ccggtgatcc      1440
     tgtcacgtgg ccgttgttcc tgagctgctt ccaaaatacc accgagatgt gcggttattc      1500
     cgatggggaa aatctaatgc ggctgcagcg gtgcttgaag gggaatgcgt tggaggcagt      1560
     tcagagctat ctgatgcaac catcgtccgt accattgatc atcgacacga tgataacgtt      1620
     gtatggtcgg ccagagcaaa tcatcaactc gcttctaggt acggtcaacg caaactccca      1680
     agccggaaca tctggaaagc ctagttggag ttggtttggc gtgcaaaaat ctttgcagcc      1740
     atctccaagc tgcgggtcta cacgatcatc tttcgaatcc gttgcttctt caggagctag      1800
     taagcaaact tccagctact ctcaagctca actggtctct tttcaagcgt cagcatatca      1860
     acgtcgacca taccacgttt ggctgctaca tggaccaaat cgtttcagca gctagtgacg      1920
     tgatctttgt caactatgcg gacggacctg gtggcaagca ggagaaacca aaggcgaagg      1980
     agaaaactta cataaacacg cacgctgtag aggagaaaag ggaggagaac gttaacagcg      2040
     gcgatcgtaa ggacaagtct aagccctgtg ccgcttgccg gaaggatggt cacaaaataa      2100
     gagattgcta cgccttccgc aagatgacac taggagatcg ctggaaactc gttcgagagc      2160
     agtacctgtg tcgtcgctgc ctgggttccc acggaaagtt cccttgtaaa gcaagcaact      2220
     gtggagagaa cggttgtgag gagcgccatc acaagcttct tcatcctgga aatccacaca      2280
     cagcgaccga tcctccgaag actacaagca cggttacagt tcatcgccaa ttcaaccaat      2340
     ctgttctatt taggatactt ccagtgtcgt tacatgggaa cggcaaaacc atcgagacgt      2400
     acgcgtttct ggacgacggc tcctctcgga ctctggtgga gacgaaggtg gcagaagaac      2460
     ttggagtggt tggtgacgtc catgcactct gccttcagtg gacgagtggt attgaacggg      2520
     tggaagacga atcgcagctg ataaagttgc aaatttcagg tgtcccaaac ggcacacgac      2580
     atgacttgaa ggaagttcac accgtgaaga gcctgaacct tccagttcaa tcgttggatt      2640
     tcggcgagct ctgcaaacag tttccacatc ttcaaggcct tccggtgcaa agctacacca      2700
     atgctgtccc cacgatccta atcgggttgg acaactcgtt cgtgatggca acccggaaaa      2760
     gcagagaagg acccaagggt agccctatcg ctgccaaaac tataattgga tggactgtct      2820
     atggaagttc cgcagcggaa actgggcagc catgcagtca tcagctattc cacatctcgg      2880
     ttcgttctcc tgatcaagag ctgcacgacc tcgtgaaggt atttttcgcg ctagagagtg      2940
     tgggaagtga tgaagaccgc cgtgggaagc agattctcga aactaccact gtgcgtacag      3000
     tgtttggcag gtttcagaca ggcttgctgt ggaaatacga caacgtgaaa ttcccggaca      3060
     gcagacccat ggcggaaaag cgattccgct gcctagaacg tcgtctagct tcgaatcccg      3120
     aactatacga caacgtaaag aaccagatca atcagtacca ggtcaaagga tactcgcata      3180
     aagcgagtcc tgatgagcta gccagtttca acccaaagcg gacttggtat ctcccgttga      3240
     acgtcgtcac gaaccccaga aagccgaaca aagtacgact ggtgtgggat gcagctgcca      3300
     aggttcaagg ccagtcgttc aattccgccc ttcttgctgg gccagatctt ctcgctccgc      3360
     tgccagcagt attaagttcg tttaggcagt tcgaggtggc catcagtgca gatatatgcg      3420
     agatgtttca ccagattaag attagaccag aagaccggtc ggcacagttg ttcctttgga      3480
     gggatgatcc gtccaaacct ttcgacgtct tcgtgatgga cgtagccacg ttcggctcca      3540
     cctgttcgcc atctgcggcc cgatatgtga aaaatcggaa tgccgaggag tttgccgaac      3600
     agttcccacg agcagcagaa gcgatcacaa agcatcatta tgtggacgat tttctatgca      3660
     gtgtccacac ggaggatgaa gcagtggaac tggccgagca agtgaggctc gtgcactcga      3720
     aggctggatt caccattcgc aattggcttt cgaattcatc caatgttctc atacgggtcg      3780
     gggaacagca aacagaatcg cccaagaaac ttctgatcga tcggtcggcc gcatacgaac      3840
     gtgtcctggg catgatttgg aagccagaac atgatgtgtt tgtcttccaa ggtgtattcc      3900
     gggaagaact tcaagtgctt attcaggatg actcgattcc gacgaagagg gaagttttgc      3960
     gtgtcgtaat gagcgtcttc gaccccatcg gactagtagc tgttttcgtc gtccacggaa      4020
     aggtgctcgt tcagcacatc tggcgcttgg ggcttggatg ggacgagcgt ataccagcca      4080
     cactgcttga gcaatggaag cgatggatca agttgttgca gcagctggat catgtcgaaa      4140
     tcccgcgatg ctactttcct ggctactctc ctgaagacta ccgtgccgta gagctgcaca      4200
     ttttcgtgga cgcatccgaa gaagcatttg ctgcagtggc gtacttccgc atcgtcgaag      4260
     gaccccgagt tcgatgttcc ctggtgtcag caaagacaaa ggtggcgcca ttgaagctgc      4320
     tgtccatacc aaggctatcg aaaaccgttg ctgagaatca cacgattcca attagccgca      4380
     aagtcttctg gagtgattcg tgcaccttcc tctcttgatt gcggtcggat cccagaaaat      4440
     atcgacagtt cgtcgcattc cggctaacag aaatccacga tctaacacag gtcaacgagt      4500
     ggcagtgggt accatcccgc tcgaacgtgg cggatgaagc cacaaagtgg ggcaaaggtc      4560
     ccaacatcgc ctccgacagc cgctggttcc aagctccgac gttcctgtac caacatccga      4620
     acttttggcc tcagcaagca acaaaaggag aagagaatca gaaccgccat ttttcattgc      4680
     gacgtagtcg aaagcaacca tcgtcaagct gatccagcaa gatgctttcg gcgatgaact      4740
     cgttatcctc aagattaacc aagaccttcc agttgtggaa caaaagagga tcgagaagac      4800
     cagcaagata atcaagcttt cttccttcct ggacgagcaa ggtgttatcc ggatggatgg      4860
     aaggattgca agcgtgcagc aggtctcatt cgacttcaag tttcccgtca ttcttcccaa      4920
     aggacacgaa gggacgaaac ttctcgtaga ttgttaccat cggttgtaca cgcattgcaa      4980
     tgctgaaacg gcagtcaacg agatgtgtca aaggttccac gtttcggaga tgaggattgc      5040
     cttgaagcaa gccggaaagc tttgtcagtg gtgcaaggtc tataaggcag ttccggcgat      5100
     cccgagaatg gctccactgc aagaagcaag gactacatca cacgttcggc tgttcaccta      5160
     cgttggcttg gactacttcg ggccgatgct ggttaagcag gggcgcaacg aagttaagcg      5220
     ttgggtcgcg ctgttcacct gcttgaccat acgcgcagtg catctcgagg tggtgtacaa      5280
     cctgaccacg gagtcctgca agatggcggt taggcggttc attgcacaga ggggggcgcc      5340
     gaaagaaata ttcagcgatc ggggcaccaa ctttgtgggg gctagccggg acttgaaaga      5400
     ggagatacag cggatcacta ccaatctcgc aaatacgttc accaacaccg atacccagag      5460
     gcatttgaat ccaccctaca cgccgcatat gggagggtct tgggaacgca tggtccggtc      5520
     agtgaaaagc gcgctggcct cgttgtctac tggcgggaag ccggacgatg aaactcttcg      5580
     cacactcctg atcgaagcag aatccatcgt gaattcgagc ccacttacgt acctgccgat      5640
     agattccgag gagcaggaag cactcacccc gaactgtttc ttgatgctga gtaccagcgg      5700
     agtcaacaag ccggctagag agccgatcga agagcgagca atagctcgct gtaactggga      5760
     tttgggcaaa gttctactgg acaagttctg ggtgcgctgg atcaaggagt atctcccaac      5820
     tatcaccaag cgcacgaaga ggttcaagga tcgcaagccc atagaagttg gagacttagt      5880
     ggttgtagtg gaggaccgga tccggaatgg atggctaaga ggacgagtgc ttcgtgtgtt      5940
     tccgggacgt gatggtcgcg tacggaatgt ggaagtcctg acagccagtg caggagtgct      6000
     agttcaatca gttgcgaagc tcgccgttct agaagttggt ggtacagcta aaatagactt      6060
     cgagcgggtc ggggga                                                      6076
//
ID   BEL-162_AA-LTR repbase;    DNA;    INV; 443 BP.
XX
AC   AAGE02022918;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-162_AA_;
KW   BEL-162_AA-I; BEL-162_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-443
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022918; Positions   83347   82905.
XX
SQ   Sequence 443 BP; 170 A; 82 C; 84 G; 107 T; 0 other;
     tgttccggac gacgaatatc cagcaccgcg gtgcgaaagg gtcactcgat tcacatgcag        60
     caggagatca tagtcgacaa gtaacgtcaa cacatacgac gatgtggaat gaaatgtcat       120
     gccaataaat tgaattgtct acctaaatac gggcaaaaca caacacgata aaaattgctt       180
     ataactagaa cattgagttg gtagaatttc ccttaaaatt agttaaaatc tagctaaaat       240
     tactgaaatt gttaaaataa attgtggaac agtggacaag ataccaatag aggattagaa       300
     atgtaagtaa cacgcagttt aaaatgaaat tatgaactaa gcgaattaaa attaattgca       360
     gcttaaaagc tgactcatgt gccaacataa aacgagtcgt gctacaagat cgtccgaaat       420
     acctttccgc agctgtccca aca                                               443
//
ID   BEL-163_AA-I repbase;    DNA;    INV; 5706 BP.
XX
AC   AAGE02018617;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-163_AA_;
KW   BEL-163_AA-LTR; BEL-163_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5706
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018617; Positions   29424   23719.
XX
CC   'AGGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           285..5681
FT                 /product="BEL-163_AA-I_1p"
FT                 /translation="MPLEHSPPKGDPPKDAASEQHGLPSRTLPPENSPPFH
FT                 GFPEWEVAMDAATAKEMQGLYRQRNQAKKKVIRIQRTLIDNESFGLAQLNV
FT                 FSKSLSAIYAEYSGFHSKVLALVPDEGIEEQENEYASFEDLHYAVSEELEE
FT                 LLLPAKRNTAPPPGQSITPKVVIQQQPLSVPIPSFDGSYSGWPKFKAIFQD
FT                 LMAHSGDTDAIKLYHLDKALIGEAAGLLDAKILSEGDYKQAWSVLEDRYEN
FT                 KRVLVETHIRGLFSLREMASESHKELRAHLSTVTHHVEGLKFLGQQITGIS
FT                 EHMIVYLVVSALDKSTRKAWEGTQKRGELPKYDPTIAFLKSRCQILENCET
FT                 AFETTKSSAKQKLIHPPSKVHPQKSHAASTTPSQPTKACEICGGSHLNFQC
FT                 SALSSLTPAQRNEKIRAAGVCFNCLRKGHRSKDCPSDKTCRKCQYRHHTLL
FT                 HDDGAPNRTTTSNVSLPAETVADPPVVPAVPSQPSPVDPPVSTTCSSNLVQ
FT                 STKTVLLLTAVVQAYDRKGQPHPCRVLLDSGSQVNFVTEEMANRLGLKKNP
FT                 ANVPIVGINALRSLARDKVTIKIRSRVSSFQANLECLVTPRVTGSIPASKI
FT                 DISNWKFPEGMALADPKFHTPDKVDLLIGGELFFDLLKPGKLNLDEGLPQL
FT                 RDTHLGWIVAGVIDDPLVSNVSLHYSLASVRDIEEEMQQFWQIEEVPEVSK
FT                 LSTEEATCEAHFLSTYQRDETGRFIVKLPFKENSTRLDDCRALALKRFLML
FT                 EKRLSRNPELQAQYVEFLREYEALGHCHETSEADDPPNQQAYYLPHHAVLR
FT                 PSSSSTKCRVVFDASAKSSPSDLSLNDVLQVGPVVQNDLHHIALRFRKFKV
FT                 AFTGDIAKMYRQVLQAPCDRRFLRIFWREHPAMPMRVLELCTVTYGTASAP
FT                 YQATRCLVQLVEEDGEDFPIAARIVKEDTYMDDVLSGADSLEDAIEAQQQL
FT                 KQLLGRGGFPIHKWCSNSQEFLEHIPVEEQEKKTVLEEHGVNEAIKVLGLH
FT                 WDPSADLMLIAYRPNPSTSHPQQPTKRTMYSEIAKFFDPLGLVSPVIVLAK
FT                 LLAQKLWQLKTEWDDPVDDDTAQQWQELQDSLTHLHEIKIPRRVTFDNAVS
FT                 HELHGFSDASNKAYGACIYLRSIFADGSAKLRLLTSKSKLAPLKEISIPRK
FT                 ELCAALLLTRLVQKVLPALDMSFRDIVLWCDSTVVLAWIRKPLQQLQIFVR
FT                 NRIAVILEHTGEYRWEYVRSQQNPADVVSRGQLAEFLKNNSLWWNGPEFLQ
FT                 RIEYIVNPPEDIPDEELPELKALVAAPDVSMDLASFLPMYSSFRKLQRVMG
FT                 YVMRFAANCRKRIPTERERRPLLTVRELRRSTEAILHVVQQAHFADEIKRV
FT                 MANESCKRLGSLRPIFHEGLLRVGGRLDRSHLPFESRHPIILPDKDPVVRL
FT                 LIQQMHVELLHVGQTGLMNALRQRYWLLNPRSTIRLITRRCVRCFRTNPTT
FT                 PNQLMGNLPASRVVPSPPFAVTGVDYAGPFWTKQGTRRPTLVKSYVAVYVC
FT                 MATKAVHLEGVSDLSTDAFLASLRRFIARRGMVHEIHSDNATNFRGADHEL
FT                 KQLHQQFHDQQTVKIIESFCHNHEIEWHFIPPDAPEFGGLWEAAVKSAKTH
FT                 LKRVAGNTSLTFEEMCTLLAEIEAVLNSRPLFTISNDSADPLVITPAHYLI
FT                 GRPLIAPAEPSLENVKASRLTRWQHLQLLREQFWRAWSRDYLNTLQPRKKN
FT                 QREMPNIRVDMIVLLQDRNQPPLNWKLGRITAVYPGEDGLVRAVDVFANGA
FT                 TYRRPINKVSVLPIVDNDPQRDPPTSDC"
XX
SQ   Sequence 5706 BP; 1469 A; 1609 C; 1442 G; 1186 T; 0 other;
     tctttttggt ccataccgaa ccggatcacg gtggccatcc gaaaagactt tcgccgagaa        60
     agttccccca gtgccgttca actgagcggc agaagccatt cccgccgaag agaaaaacga       120
     cgcgctacgc taaaaaagtg ctgtgcccaa acaaaacaac tgcttccgct gctacgattg       180
     tgattcgagt gagtgaaaaa aaaataaatt ccgcgttcgc atacaaactc aaattgaagt       240
     accgcgttcg agtttaaaaa agtagtgaaa aaagtgacgt aaaaatgcca ttggagcatt       300
     cgccaccaaa aggcgaccca ccaaaggacg ctgcaagcga gcagcacgga ttgccttcca       360
     gaacgctgcc tcccgaaaat tctccacctt tccacggatt tcctgagtgg gaagtcgcaa       420
     tggatgccgc cactgccaag gagatgcaag ggctgtatcg tcagcgaaac caagccaaga       480
     agaaagtgat tcggattcag cgaactctca tcgacaacga gtccttcgga ttggcccaac       540
     tgaacgtctt ctccaaaagc ctgtctgcca tatacgccga gtatagtggc ttccacagca       600
     aagtgctagc actggtgcca gacgaaggta tcgaggagca ggagaacgaa tacgctagct       660
     tcgaggatct ccactacgcc gtttcggaag aactggagga gttgctgtta ccggcaaaga       720
     ggaacacagc gcccccgcct ggccaaagca ttacgccgaa ggtagtcatc caacagcagc       780
     cacttagtgt gccgatcccg tcattcgatg gcagctactc cgggtggcca aaattcaaag       840
     ccatctttca ggatctgatg gcccattcgg gggatacaga cgccataaaa ctgtatcacc       900
     tcgataaggc gctcatcgga gaggcagctg gcttattgga tgcgaagatc ttgagcgaag       960
     gtgactacaa gcaagcctgg tccgttttgg aggatcgtta tgagaacaag cgcgttctcg      1020
     tagaaaccca catccgtggc ttgttttcac taagagagat ggcatcggaa tcccacaagg      1080
     agttgagggc ccacttatcc accgtcaccc accacgtcga gggcctgaag tttctcggac      1140
     aacaaatcac tggcatctca gagcacatga ttgtctacct ggtggtttcg gcgctcgata      1200
     aatccacccg caaggcctgg gaagggaccc aaaagagagg cgagcttcca aaatacgatc      1260
     caaccatcgc ctttctgaag tccaggtgcc aaatcctcga gaattgtgaa acggcatttg      1320
     agacaacgaa atccagcgcc aagcagaagc tgatccatcc gccatccaag gttcatccgc      1380
     aaaagagcca tgcagcatcg accactccat cccaaccaac gaaagcgtgt gaaatttgtg      1440
     gtggttctca tctcaacttc cagtgttcgg ccttgtccag tctcactcct gcccagagga      1500
     acgagaagat ccgagctgct ggagtctgct tcaattgcct gcggaaaggg caccgatcca      1560
     aggactgtcc ttccgacaag acgtgccgca aatgtcaata ccgacaccac acgttgctcc      1620
     atgacgatgg ggccccaaat cgaacgacta catccaacgt ttcgctccca gcagagacgg      1680
     tggcagatcc gccagtagtt ccagccgtgc cgagtcaacc gagccccgtg gacccgcctg      1740
     tgtccacaac atgttcatcg aacttggtcc aatccaccaa gacggtactg ttgctaaccg      1800
     cagtggtgca agcctacgac aggaagggcc agccacaccc gtgccgggtc ctgttggaca      1860
     gcggatccca agtcaacttc gtcacggagg agatggccaa ccgccttggc ctcaaaaaga      1920
     acccagccaa cgttccaatc gttggcatca acgccctacg gtccctggcc cgtgacaagg      1980
     tgacgatcaa gatccgttcc cgtgtatcca gcttccaagc gaacctcgag tgtctggtta      2040
     ccccaagagt gaccggttcg attccagcat ccaagatcga catctccaac tggaagttcc      2100
     cggaaggaat ggccctcgct gatcccaagt ttcatacgcc tgataaagtg gatttgctaa      2160
     tcggtgggga gctatttttc gacttgttga aaccaggtaa gctaaaccta gatgaaggcc      2220
     ttccacagct acgagacact cacctggggt ggatcgtggc tggtgtcatc gacgacccgc      2280
     ttgtgtcgaa cgtgtcgctc cactattcgc tcgcatccgt gagagacatc gaggaagaaa      2340
     tgcagcaatt ctggcaaata gaggaggtgc cggaagtttc caagctatcc accgaagaag      2400
     ctacctgtga agcacacttt ctgtccacat atcagcgtga cgaaaccgga agattcatcg      2460
     ttaagctgcc cttcaaggaa aactccaccc ggcttgacga ctgccgtgct ctagcactaa      2520
     agaggtttct gatgctggag aagcgactgt cccgcaaccc ggaactgcag gcgcagtatg      2580
     tggagttcct ccgggagtac gaagctcttg gacactgcca cgagaccagc gaagccgacg      2640
     atcctccgaa ccagcaagcg tattatttgc cgcatcacgc agtgctacgg ccgtccagct      2700
     cgagcacgaa atgtcgagtt gtgttcgacg caagtgctaa gtcgtcgcca tcagatctct      2760
     ccctgaacga tgtactacaa gttggtccgg tggtgcagaa cgacctacac cacatcgcgt      2820
     tacgcttccg gaagttcaag gttgccttta ccggagacat cgcaaaaatg taccggcaag      2880
     tacttcaagc cccatgcgat cgccgattcc tacgaatctt ttggagggaa catccggcga      2940
     tgcccatgcg agttctggaa ctttgtaccg tgacttacgg tacggcgtca gcaccgtacc      3000
     aagctaccag gtgtttggtg caactcgtcg aagaagacgg cgaggacttt cccatcgccg      3060
     ctcgtatcgt gaaagaggat acgtacatgg acgatgtact ctccggcgca gactcgttgg      3120
     aggacgccat cgaggctcaa caacaactta agcaactcct tggacgcgga gggtttccca      3180
     tacacaagtg gtgctccaat tcccaagaat tcctggagca tattcctgtg gaagaacaag      3240
     aaaagaagac cgtgttagag gaacatggag tgaacgaagc tatcaaggtt cttggtttac      3300
     actgggatcc atctgcagac ttgatgctta tagcataccg accgaatcca tcgacgtctc      3360
     atccgcaaca gcccacgaaa aggacgatgt attcggagat tgccaagttt ttcgacccct      3420
     tgggactggt ttcaccggtc atcgttttgg caaagctcct ggcgcaaaaa ctgtggcagc      3480
     tcaaaaccga gtgggacgac ccagtggacg atgatacagc acagcagtgg caggaactcc      3540
     aagattcctt gacacatctc catgaaatta aaataccacg acgtgtcaca ttcgataacg      3600
     cagtgtccca tgagctgcac ggcttctctg atgcctcaaa caaggcgtac ggagcctgca      3660
     tctacttgcg aagcatcttt gccgatggct cagcgaagct acgtctactc accagcaagt      3720
     cgaagttggc ccccctcaaa gaaatctcca tccctcgaaa ggaattgtgc gccgccctcc      3780
     tgttgacccg gttggtgcaa aaagtgttac cagccctgga tatgtcgttc cgggacattg      3840
     tgctgtggtg tgacagtacg gtggtcctag cctggattag gaaacctctc caacaactac      3900
     aaatattcgt aaggaatcgg atcgctgtca tcctagaaca caccggtgag taccgctggg      3960
     aatatgtccg gtcccagcag aacccagccg acgtcgtatc gcgtggtcaa ctagccgagt      4020
     tcctgaagaa taacagcctt tggtggaatg gaccggaatt cctccagaga atcgagtaca      4080
     tcgtaaatcc ccctgaagac atcccagatg aggagctgcc ggaactaaaa gcgctggtgg      4140
     cagcgccaga cgtgagtatg gaccttgcat catttctccc catgtacagc agcttccgca      4200
     aacttcaacg cgttatggga tacgtaatgc gtttcgctgc caattgccgg aaaaggatcc      4260
     caaccgaacg tgagcgaaga ccccttctga ccgtccgtga gctgcgtcgc tcaacggagg      4320
     ccatcctaca cgttgtacag caggcacatt tcgccgatga aattaagcga gttatggcaa      4380
     acgagtcctg caagaggctt ggaagtctac gacccatctt ccacgaagga ctgcttcgag      4440
     taggtggtcg gttggatcgc tcacatctac cattcgaaag ccgtcatcct atcatcctac      4500
     cggataagga tccggtggta cggcttctga tccagcaaat gcacgtcgag ctcctccacg      4560
     ttgggcaaac gggcctgatg aacgctttga ggcaacggta ttggctacta aacccacgat      4620
     cgaccatccg gttgatcaca cgtcggtgcg ttagatgctt ccgaaccaat ccgacgaccc      4680
     ctaaccaatt gatgggaaac ctgccagcat cgagagtcgt gccgtcaccg cccttcgccg      4740
     tcaccggcgt ggactacgcc gggcctttct ggaccaagca aggaactcgt cgtccgactc      4800
     tggtaaagtc ctacgtggcc gtgtatgtgt gcatggcaac caaggccgtc cacttggagg      4860
     gcgtctccga tttaagcacc gatgccttcc tggcatccct tcgacgtttc attgcccgcc      4920
     gtggaatggt ccatgaaatt cattcggaca acgcaacaaa ctttcgtggt gctgatcacg      4980
     aattgaaaca attgcaccaa caattccacg accaacaaac cgtgaagatc atcgaatcct      5040
     tctgccacaa ccacgagatc gagtggcatt tcatcccgcc ggacgctcct gaattcggtg      5100
     gattatggga ggcggccgtg aagtcggcga agacccacct gaaacgtgtc gctgggaata      5160
     cgagcttgac gttcgaggaa atgtgtacgc tcctggccga aatcgaggct gtcttgaact      5220
     cccggcctct gttcactatt tccaacgact cggcggaccc gctggtcata actccggcac      5280
     actacttaat tggacgtccg cttatcgccc cggctgaacc atccctggaa aacgtgaagg      5340
     catcccgttt gacacgatgg caacacctcc agcttctgcg tgagcaattc tggcgtgcct      5400
     ggagccggga ttatttgaac accctgcagc ctcggaagaa aaaccagcga gagatgccga      5460
     atatccgtgt ggatatgatc gtactccttc aagacaggaa tcagccacca ctcaactgga      5520
     agttgggacg aatcacagcc gtgtaccctg gagaggacgg cctggtacga gcagtagatg      5580
     tcttcgctaa tggagccacc tatcgacgac cgataaacaa ggtgtccgtt ctgcccatcg      5640
     tggataacga tccccagcga gacccaccaa cttcggactg ttgagattcc tcaaccgggg      5700
     ggagga                                                                 5706
//
ID   BEL-163_AA-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   AAGE02018617;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-163_AA_;
KW   BEL-163_AA-I; BEL-163_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-425
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018617; Positions   23718   23294.
XX
SQ   Sequence 425 BP; 122 A; 130 C; 90 G; 83 T; 0 other;
     tgttccgtct cccgccgaaa acacgtccga acatgttaag cgtcctgcca aacaagccaa        60
     cgaaaactcc ccaccaatca gcgacgagca gcgatcggtg acatgtataa aagagcggtc       120
     gctgccatgc cctgattatt caagtcccat ccgcgcgcga gtgcacatcg aagcagcagc       180
     agcagtgaaa gcaaactttg taaaaaagag gaaagcagag aaataaacag tgttttttag       240
     tgtagccgtc ggagttcttc attccagcca ccattccctc tgaggccagg agcagcgtca       300
     aaccccagct ctttttagag ctccaaagag ttgagaaaat tttcacaatc gacgcttgcc       360
     tcctccgctc aattccaacc tcaagtacag tccaccgccg ccaaccgttc gccccagcgc       420
     gaaca                                                                   425
//
ID   BEL-164_AA-I repbase;    DNA;    INV; 6313 BP.
XX
AC   AAGE02018006;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-164_AA_;
KW   BEL-164_AA-LTR; BEL-164_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6313
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018006; Positions   18014   11702.
XX
CC   Positions [5363-5923] - Integrase core
CC   'GTAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..4880
FT                 /product="BEL-164_AA-I_2p"
FT                 /translation="MVDNGNDSQVPRHCASCTKPDELDDMVACDACHNWHH
FT                 YSCAQVDATVQDRAWKCASCELPTNSDQSPSGTGVKEVNKTGAKPKAPIGL
FT                 PQTLAVPSKKSGAKSSAGSRKSKKVTGEQSTTSSARMRLEAELKAVEEQQR
FT                 IKEEELAAEKELQDLERKMEAELRERELAIETKRIAEAKAELKKKISDERE
FT                 FRMKQMAIRRQSEEEKAKLIRQASEYGSTRGSLVGSATRSDSKVEDWLEKS
FT                 TQQTAGPLQQFTSAVDPSCGQTQVFLEKTNRQQPADIRADRSLDSPPLTLP
FT                 NKAVPSFKLHPTQPLVSQVRKDQQAHTNAFVNRHFVDEFDLLNVGGASGNQ
FT                 ANSAGQNQKRVGGNIDGWGNRDHASARERDEGACRLQNVGEAPLPEGGAYH
FT                 QRNDPPVRNMGDNRRGQAATDQSGAGIGVRIRQPVSRTDESINQGRNNEEE
FT                 FLESPTHRQLTARQVMGKDLPNFSGNPEEWPIWISNFRRSTSTCGFSDDEN
FT                 LIRLQRCLKGPALEAVRSRLLCPASVPHVIRTLEMRYGRPETLIRSMTERV
FT                 RRQPSLRINDLDGIIEFGLVVDNLIQHLKNAGQQAHLTNPSLLHDLVGKLP
FT                 VDYKLKWSAYKSMRLDVDLSTFGQFMSTLVELAYEVADDFPNIEKIQKQKQ
FT                 KPKERAFVQTHTESTGPPVVRATNSGTPGTRTPKKLCAVCKAEGHRVADCS
FT                 RFQTMDVSGRLNVVQQSGLCRSCLNFHGKWPCKTAKECSVNDCRLKHHPLL
FT                 HSPAATTHAVVSTSHLSETTTSEGPFFRIVPVTLYGKDCVVNVYAFVDEGS
FT                 KITLLEDTVADQLGVEGPTEPLNLQWTGNIKRSEPNSRRITAAISGIGSSK
FT                 QYQLINAHTVGGLLLPSQTVNYEEMCSRYPHLRSLPISSYEKVSPKLLIGL
FT                 DNLKLTVPLKIREGRWTEPIAAKSRIGWSIYGCAATTETTVVCGLHFGGWT
FT                 NQEQDLNQLVRDYITLDNAGVTCSNTPLESEEDKRARMLMESTTKRIGGAF
FT                 ETGLLWKVDHPRFPSSYGMAYKRMCAMERRLKKDSTLYERVRQQVREYEMK
FT                 QYAHKATPHELSTTSSDQCWYLPLGIVLNPKKPNKLRMIWDAAATVDGVSL
FT                 NTALLKGPDFLTSLPAVIGNFRLYRYALTGDIKEMFHRFFIRAQDRQFQRF
FT                 LFRDHPHEEPVIYVMDVAIFGSACSPSSAQYIKNLNAREFEAEYPRAAAAI
FT                 IHRHYVDDYLNSFGTVEEAVKIGRQVKNIHAEGGFEIRNFLSNDPTIAAHV
FT                 GDESSEAEKHIHVEKNERIESVLGMKWIPSSDTFTFTISLRDNLQHVLNRS
FT                 HVPTKREVLRTVMSFFDPLGLISFYLVHGRILMQDIWAIGIGWDDLINEKI
FT                 YMQWKKWIDLIPELSNLRIPRCYIRGATESSYCELQVHVFVDASQSAYAAA
FT                 AYFRAETPEGPVVNLVAAKSKVAPLKLLTIPRLELQAAVLGSRLLNSVIAM
FT                 HALPVTKRVLWSDSNTVLAWIRSDQRRYHQYVGFRISEILSLTDVNEWRKV
FT                 PTKENVADDATKWGAGPNISSDSRWFEGPQFLRQPEECWPGRDVQIDPTEE
FT                 EIVACNIHDAIQPALVDVARFSKWEKLHRTMAYVHRFVQNVQRTHRNEAR"
FT   CDS           5228..6313
FT                 /product="BEL-164_AA-I_1p"
FT                 /translation="MRQLYEIPRLRSIVLKVTEKCMTCRIRRATPKPPPMA
FT                 PLPKVRVTPYVRPFTFVGVDYFGPVLVKMGRSNVKRWIALFTCLTIRAIHL
FT                 EVVHSLSKESCVMAVRRFVSRRGAPAEIFSDNGTNFLGANNQLKREIEELD
FT                 QHLASTFTNTTTRWSFNPPGAPHMGGAWERMVRSVKVAIGGLLETQRRPDD
FT                 ETLETIIIEAEAMINSRPLTYIPLESADQESLTPNHFLLGSSSGVKQMPVM
FT                 PTDYQATLRNGWKLAQHLSDSMWKRWIKEYLPVISRRSKWFDEVKEVEVGD
FT                 LVLIVDGAIRNQWMRGRVDKVITGKDGKVRQVWVRTANGVLKRPVVKVALL
FT                 DVVDSGKPEVSNRGLRVGG"
XX
SQ   Sequence 6313 BP; 1718 A; 1469 C; 1757 G; 1369 T; 0 other;
     attcctttag aatttttcat cgcaaagcaa tggtggataa tgggaatgat tcgcaggtgc        60
     cacgccattg tgcttcatgc acaaagcccg acgaactcga tgacatggtg gcctgtgatg       120
     cttgccataa ctggcatcat tactcctgcg cccaagtcga tgccacagtt caagatcgag       180
     cctggaaatg tgcatcttgc gaactcccaa caaacagcga tcaaagtccc tccggaactg       240
     gtgtgaagga ggtgaataaa actggtgcga aacccaaagc gccgatagga cttccgcaga       300
     ccctagctgt tccgtcgaag aagtcaggag cgaagtcgtc ggccggcagc cgaaagtcga       360
     agaaagtgac cggggaacaa agcactacgt cgagtgcccg gatgcgactg gaggcagaat       420
     tgaaggctgt ggaagagcag cagcgtatca aagaagaaga gttggcggcg gagaaagagc       480
     tccaggacct cgagcggaag atggaggcgg aactgcgaga aagggagttg gcaatcgaaa       540
     ccaaacgaat tgcggaagca aaagccgagt tgaagaagaa gatatccgac gaacgagagt       600
     tccggatgaa gcagatggcg atcaggaggc agtccgagga agaaaaagcg aagttgattc       660
     ggcaagcttc cgagtacggc agcaccagag gcagtttggt cggcagtgct acacgatcgg       720
     atagtaaggt ggaggactgg ctggaaaagt cgacgcagca gacagcggga ccgttacaac       780
     agttcacgtc agcagtcgac cctagctgtg gtcaaacgca agtattccta gaaaaaacta       840
     accgtcaaca accagccgat attagggccg ataggagctt agattctccc cctctaaccc       900
     tgccaaataa agctgtcccc tctttcaaac ttcaccccac acaacctctc gttagtcagg       960
     tgcgtaaaga tcagcaagct cacacgaatg ctttcgttaa tcgacatttt gttgatgagt      1020
     ttgaccttct caatgtgggt ggtgcttccg gtaaccaggc caattctgcc ggccaaaacc      1080
     agaagcgagt gggcggtaac atcgatggtt ggggaaatcg tgatcatgca agtgctcgtg      1140
     aacgcgatga aggggcatgt cgtcttcaaa atgtgggtga ggcaccattg cctgaaggcg      1200
     gtgcttacca ccaacggaac gacccaccag tgcgaaatat gggcgacaac cgtcgcggtc      1260
     aagcagccac ggatcaaagc ggagcgggaa tcggtgtcag gattcggcaa ccggtttcga      1320
     gaactgatga gtccatcaac caagggcgta acaacgaaga agaattcctc gagagcccaa      1380
     cacatcgcca gttgactgcc aggcaggtga tggggaagga tttgcctaat ttttctggga      1440
     atccagaaga atggccgatt tggatcagca attttcgtcg ttcaacatct acttgcggat      1500
     tctctgacga tgaaaacctg attcgccttc aacgctgtct caaaggtcca gctctcgaag      1560
     cagttcgcag cagactgtta tgtccagcta gtgttccaca cgtgatccgc actttggaga      1620
     tgcggtatgg tcggccggag acacttattc gttccatgac ggaacgagtt cgtcggcagc      1680
     catctctgag gatcaatgac ctggatggga tcatcgaatt cggcttagta gtcgataatc      1740
     tgattcagca cttgaagaat gcagggcagc aggcacatct aactaatcca tcgttgctgc      1800
     acgatctggt tggaaagttg cctgttgact acaagctcaa atggtccgct tataagagta      1860
     tgcggcttga cgtggatctg agtacgtttg ggcagtttat gtcaacttta gtggagctgg      1920
     catatgaagt agcagatgat tttcctaaca tcgaaaagat ccagaagcaa aaacaaaaac      1980
     ccaaggaacg ggcgtttgtg cagacgcaca cggaatctac tgggccacca gtggttcgcg      2040
     cgactaacag tggtactcct ggcactcgca ctccgaagaa actgtgcgcc gtttgcaaag      2100
     cggaaggaca ccgggtcgcc gattgcagcc ggttccagac aatggacgtc agcggaagat      2160
     tgaatgtggt gcagcagagc ggattgtgcc gatcttgcct aaactttcac ggaaaatggc      2220
     cttgcaagac ggcgaaggaa tgtagcgtca acgattgtcg cctgaaacat catccactgt      2280
     tgcattctcc agcggcgaca acccatgctg tggtgtcaac aagtcatctg agcgaaacaa      2340
     ctacaagtga ggggcctttc ttcagaatag ttcctgtgac actgtacggc aaggattgcg      2400
     tagtgaacgt ctacgcgttc gtggacgaag ggtcgaagat tacgctattg gaagacacgg      2460
     tggcggatca acttggagtc gaggggccaa cggaaccttt gaacttgcag tggaccggaa      2520
     acattaagcg tagtgaacca aattcaagac gtatcactgc tgcgatttcc ggaataggtt      2580
     catcgaaaca gtatcaactg attaatgctc atacagtcgg tggattgctg cttccttccc      2640
     agacggtgaa ctacgaagaa atgtgcagtc gttatccgca tttacgtagt ctgccgatta      2700
     gcagctacga gaaggtctcg ccaaaactct tgattggtct tgacaacttg aagctcaccg      2760
     taccactgaa aatccgagaa ggaaggtgga cggagccgat agccgccaag agtcgcatcg      2820
     gatggagcat ctatggatgc gcggcgacaa cagaaacgac ggtagtgtgt gggcttcatt      2880
     ttggaggatg gaccaatcag gagcaagatc tcaatcaatt ggttcgcgac tacattacgc      2940
     tggacaacgc cggtgtaacg tgttccaata cgcccttaga gtccgaggag gataaacggg      3000
     cgagaatgct gatggagtca actaccaaaa gaatcggtgg ggccttcgaa acgggacttt      3060
     tgtggaaggt cgaccaccca cggttcccga gcagctacgg catggcctac aaacgaatgt      3120
     gtgccatgga gagaagactg aagaaggatt cgacactcta cgaacgtgtt aggcagcagg      3180
     ttcgggaata cgagatgaag cagtatgcgc acaaagcaac gccgcatgaa ctttccacca      3240
     ctagttcgga ccagtgctgg tacttgccgt tggggatcgt cctgaaccca aagaagccga      3300
     acaagctgag gatgatctgg gatgcagcgg caacagttga cggggtctcc ctaaatactg      3360
     ctctgctgaa agggccagac ttcctaacct cattaccggc ggtcattgga aactttcgat      3420
     tgtaccgcta cgccctaacc ggagacatca aagaaatgtt tcaccggttc tttatccggg      3480
     ctcaagatcg tcagttccag cgattcctgt tcagggatca tccacatgag gagccagtaa      3540
     tctacgtcat ggacgtagcc atctttggct cggcctgttc accaagcagt gcgcagtata      3600
     ttaaaaacct gaacgccaga gaattcgaag cagagtatcc acgagcagca gcagccatca      3660
     ttcatcgcca ctacgtggat gattacctga atagcttcgg aacagttgag gaagcagtga      3720
     agatcggacg ccaagtgaag aatatccacg ccgaaggtgg gttcgagatc cgcaatttct      3780
     tgtccaacga cccgacgatt gcagcacatg ttggcgacga atcatcagaa gcggagaagc      3840
     atatccacgt agagaagaac gagcgaatcg aatccgtact gggtatgaag tggattccaa      3900
     gcagcgacac attcacattc accatttccc tgcgagacaa ccttcagcac gtcctgaata      3960
     ggtcacatgt tcccacgaaa cgagaagtct tgcgcactgt aatgagtttc ttcgacccgc      4020
     tgggactgat ctcgttctat ctggtgcacg ggcgcattct gatgcaagat atttgggcga      4080
     tcggtattgg ttgggacgac ctgatcaacg agaagatcta catgcagtgg aaaaagtgga      4140
     tcgatcttat cccagagttg agcaatctcc gcattccgcg ttgttacatc cgtggagcca      4200
     cagaaagcag ttattgcgag ttgcaggtcc acgtgttcgt cgatgcaagc cagtcggcat      4260
     atgcagctgc agcgtatttc cgcgcggaaa cgccggaggg tccggtggtc aacctcgtag      4320
     cagcgaaatc caaagtggca ccgttgaagc tgttgacgat tccacgactc gaacttcagg      4380
     cagctgtttt gggttcccgt ctgctcaaca gcgtcattgc catgcacgct ctcccagtaa      4440
     caaagcgggt actgtggtcc gattcaaata ccgtcctggc ctggattcgg tcggatcagc      4500
     ggcgatatca tcaatatgtc gggtttagga tcagtgaaat tctatcgctg acggacgtca      4560
     acgagtggcg gaaggtacct acaaaagaga atgtagccga cgacgcaaca aagtggggag      4620
     cggggccgaa tatcagttcc gacagccgat ggttcgaagg accccagttt ctccgacagc      4680
     ctgaagagtg ctggcctgga agagatgttc agattgatcc cacggaagag gagatagtgg      4740
     cgtgtaacat tcacgacgca atacagccag cgctggtgga cgtagccagg tttagtaaat      4800
     gggagaaatt acatcgcacc atggcgtacg tgcatcgctt cgtccagaat gtgcagcgaa      4860
     ctcatcgaaa cgaagcacgg tagtctgggg ctttgtcgca ggacgaattg gtgcttgccg      4920
     agagatggtt atggatacta gcacaaacag agtcctttac catggaaata cagctgttgg      4980
     agaacactaa agggattccg gacggtgtcc acggagtcct gcctaaatca agcaccttgt      5040
     ataagatgtg gccgtttatt gatgaagcag gggtgttgcg gaaacgaagt cgtctaagca      5100
     atgcagattg gatggcgttc aataccaaat atccggtgat tctttcgcgt caacacccaa      5160
     tcacttttct tctgactact accatcgtag atttcgccac tccaatcgcg agactgttgt      5220
     caacgagatg cgacaacttt atgaaatccc aaggctccgt tcaatagtgc tcaaagtgac      5280
     ggagaaatgt atgacgtgta ggattcgccg ggccactcct aaaccgcctc ctatggcacc      5340
     tttgcctaag gtcagagtga ctccgtatgt gcgtcctttc acgttcgtag gtgtggatta      5400
     ctttggtccg gtgctggtga agatgggacg cagcaacgtc aagaggtgga tagccctttt      5460
     cacctgcttg acaatccgtg caatacacct ggaagttgtg catagtttat ccaaagagtc      5520
     atgtgttatg gcggtcagga gatttgtctc gaggagagga gctccagcgg aaatcttcag      5580
     cgataatggt acgaactttc ttggtgcaaa caatcagctg aagcgagaga ttgaagaact      5640
     tgatcagcat ttggcgtcca cctttaccaa tacaacaacc cgttggtctt tcaaccctcc      5700
     tggagctccc cacatgggtg gcgcatggga gcgcatggtt aggtcagtga aggtagcaat      5760
     cggaggctta ctggaaacgc agcgacgacc cgatgacgag acactggaga cgattataat      5820
     tgaggcagaa gcgatgatca actcacgtcc actaacttac ataccattgg agtcagcgga      5880
     ccaggagtct ctaactccaa atcacttctt attaggaagc tcaagtggag tgaagcagat      5940
     gccggtgatg ccaaccgact atcaagctac gctgcgaaat gggtggaagc tcgcacagca      6000
     tttgtcggat agcatgtgga aaagatggat aaaggagtac ttgccggtga tctcaagacg      6060
     gtcgaaatgg ttcgatgaag tgaaggaagt ggaagtagga gatttggtgc tgatcgtgga      6120
     tggtgcaata cggaaccagt ggatgagagg aagagtggac aaggtaatta caggaaagga      6180
     tggaaaggtt cggcaagtat gggtgcgaac agcgaacggc gtgctgaaaa gacctgttgt      6240
     gaaggttgcc ctactcgacg tcgtagatag tggaaaaccg gaagttagta acagaggttt      6300
     acgggtgggg gga                                                         6313
//
ID   BEL-164_AA-LTR repbase;    DNA;    INV; 477 BP.
XX
AC   AAGE02018006;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-164_AA_;
KW   BEL-164_AA-I; BEL-164_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-477
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018006; Positions   11701   11225.
XX
SQ   Sequence 477 BP; 196 A; 71 C; 89 G; 121 T; 0 other;
     tgtgacgacg agtacccctc ggctggctac caaaagtagt ttccacaggg tgttccgttg        60
     cgccagtaga gctgtgacag gagaaatgtc accatgaaga atgagagatg acgaagcgaa       120
     agcaatagaa attgaacaag aaaagaaagt agctgttaaa tttataaggt tgttaaaacg       180
     gtaaaaagta gtaaaatttg tgaaattgaa gcctaaaacc taaagtgagt aaaatataat       240
     tagtagttaa ttaaattgaa tcctaattag tttccaaaac ttagatacta cagagcaaat       300
     tgccaattga aaacccactt aaactaaagg aaaaactaag gagaaaactg aaaaattgta       360
     agtctaaatt tgttatccta actaatgaaa tacctaaaat aaatctaaat ttgcagctaa       420
     agctgattcc tacaaactaa tagttttagt acgggctgct aagaaacagt ttcaaca          477
//
ID   BEL-165_AA-I repbase;    DNA;    INV; 6891 BP.
XX
AC   AAGE02018869;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-165_AA_;
KW   BEL-165_AA-LTR; BEL-165_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6891
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018869; Positions  135820  128930.
XX
CC   'TCTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6891
FT                 /product="BEL-165_AA-I_1p"
FT                 /translation="MMNSLSNVRQTRSQTRFQQANANLNPDDDDKASSKCS
FT                 EDSFIPSRVDEDGGELCDCAGCNRPNNTERYMVQCGKCERWYHFTCANVNT
FT                 ATVHSVSFVCAVCMPVVSEPAHSQISGISGTSSAHRSRVERELQRLEEERK
FT                 LLEDLNRERIARERALNEKELQEKLEQGKQFIARKHELLNRKDGEEGNSVR
FT                 SMRSSQRSAKRTEDWVRQTKAADEVIGEQIPASSSVNADLSVCASSGNLQV
FT                 VHPSSTPLRIPPAISSPVGDGRVDVGLEAKSIPRTLGSITIGSEGSLEGAV
FT                 GGDAEKDVQRKGLSALPFVDLQPYADLLKVEEIVPSASASVMPGIKRIGTH
FT                 YKRWSVETGELRRQQRQTEAEHRAIQDLVVKHQLDIDTRRKREVELVNQIK
FT                 SLQWRHDNELQLIRESEEGLRIQLNQRDREQAVLKVQVETLEKLIVEEKER
FT                 SRATEVKLQELLMLRNKECDALQLQLAELESEIQCLRDSERLLRTQLEAAE
FT                 QRENESHRLRNEAMKEYWDLHDEVQQFISGTRDGLGDSGCSPPLPPPPASW
FT                 FESTNGPNIENSIRVDSNHAFPPPPPPLSVDSSSLNRQQEYVTQPISCGVG
FT                 VMNEPVPIPPTSSMFPSVPTTHRQIPSPTLVPAQFGPTPQQIAARQVVTRE
FT                 LPIFSGDPVDWPLFISSYQHSTQICGYTDSENLLRLQRSLKGSAKDSVSSF
FT                 LLHPSTVPQVMSTLQQLYGRPEQIVNNMIAKVRATPPPKPDRLETLVSFGL
FT                 IVQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFSWALYQEQVPMVDL
FT                 NVFSDYMAKVSSAASGVTQLASIPQKAVKEERSRPKDKSFVNAHVTSEQPK
FT                 ANHREVTQKAGSGSNSGHLNEKGAKSCSVCNVESHQIENCSSFKRLDLDGR
FT                 WKAVKANKLCARCLTSHARWPCKGEVCGINDCPKRHHRLLHFEPPVTSKTT
FT                 SAVVSVHRQLSSSTLFRILPVTLFGAKGQFNTFAFLDDGSSVTLVERSIAE
FT                 ALGASGEVETLNIEWTGGINKTIAGTEVVTMEISEAGVNKRYKLSEVYTVE
FT                 NLGLPQQTTDYAELASRYTHLKKLPVKSFRCAVPGILIGQSNVHLLATLKL
FT                 REGKLNEPIATKTRIGWAVCGSLRKPRANTIHRQLHVHAEPNTEDLHEYVS
FT                 RFFDIESLGVALVPTVKGVEEQRAYSILDATTRRLNSENFETGLLWKHDYV
FT                 EFPDSRPMAERRFRVLEKRLARDPQLYDSVRQQIADFKAKGYIHEATAEEI
FT                 EGFDLRRTWFLPIGVVVNEKKPGKVRVIWDAAAKVDGVSLNSMLLKGPDLL
FT                 TPLLSVMFPYRERQVAVSADIKEMFLQISIRPEDRSALQFPYRDFPELPMS
FT                 TMVTDVAIFGAACSPAHSQFIKNLNASEQEAEFPRGAAAVKKRHYVDDYVN
FT                 SHDTAEEAIEAAKEVIEVHKRAGFHIRNWMSSDKSVVEQLGEPNQKTAKAM
FT                 LSEKDTGLERVLGMAWRQDEDVFTYTLQFGEKVRILMENTTIPTKREMLRL
FT                 VMSIYDPLGIVASFVIHGKILIQEVWRSKIDWDSCISEEIATRWTDWTTVL
FT                 KRMDGLRIPRCYFSGYDPASFKTLELHIFVDASEQAFAAVAYFRIVDQGQI
FT                 RVALVSSKTKVAPLRGLSIPRLELMAALLGARLRRTVEENHTLKVQKTCFW
FT                 SDSSTVGSWIRSETRRYRQFVAFRVDEILSLSKIDEWQWISTKINVADEAT
FT                 KWGKGPSCNVDSRWFQGPEFLYSNSEDWSMTPDEDTDESEMELREAYVFSH
FT                 HIRKPMIDTNRFSRFERMLRSVAYVHHFVDSLRYKKAHGSADFAGLTSAEL
FT                 QKAERTLWSIAQSEAFPEEVATLKQNPNRSTGQQKQIEASSSIVKQSPFAD
FT                 EYGVLRVGSRAAEAEVLTYDAKFPIILPRNHRITELLLDFYHRKYGHANDE
FT                 TVVNEVRQKFHVPRLRVEIRLARKRCMWCRVYKSTPVCPKMGPLPAVRLQP
FT                 DVRPFTFVGVDLFGPYLVKVGRSVAKRWVCLFTCLTVRAIHLEVVASLSTD
FT                 ACKKAIRRFVARRGSPQEIFSDNGTNIIGASRELQDEFRRMATELGSTFTN
FT                 AHTQWRFNPPAAPHMGGCWERMVRAVKAALGCVPVVRKLDDESFATVLAEA
FT                 ESMVNSRPLTFIPLETANHESLTPNHFLLLSSNGVREPEKFPTDAGMALRS
FT                 SWNTVKHTLDNFWRRWVVEYLPTIIRRTKWFRDVKAIEVGDLVLVVDENVR
FT                 NRWIRGRVIQTMPGKDGVPRRAEVQVSGGTLKRPVTKLAVLDVIRSGDAGP
FT                 DVKATRGGG"
XX
SQ   Sequence 6891 BP; 1860 A; 1581 C; 1930 G; 1520 T; 0 other;
     atcttaagaa ttcaccggat catgatgaac tcgctgtcga atgtgcgaca aacccggtcg        60
     caaacgaggt tccagcaggc gaatgctaac ctcaacccgg atgacgacga caaggcttcg       120
     agtaagtgtt cggaagattc tttcatccca tccagagtgg atgaagacgg aggtgagttg       180
     tgcgattgtg ctggctgcaa tcggccgaat aatacggagc gatacatggt tcagtgtggg       240
     aaatgtgagc gctggtacca cttcacctgt gccaacgtga acacggccac ggtacactct       300
     gttagcttcg tttgtgcggt atgtatgcct gtcgtgtccg aaccggcaca tagccagata       360
     agcggtattt cgggtacgtc tagtgctcat agatcccgag tagaacgtga attgcagcgt       420
     ctggaagaag agcggaagtt gctcgaggac ctgaatcgcg agcggattgc aagggaacga       480
     gcgttgaacg agaaggaact ccaggagaaa ctggagcagg gtaagcagtt tatcgcacgc       540
     aaacatgaac tgctaaatcg gaaagacggc gaagaaggaa acagtgtgcg gagtatgcgg       600
     agcagccaga ggagtgcgaa gcgcaccgaa gattgggtac ggcagacgaa ggcagctgat       660
     gaggtaatcg gtgaacagat acctgcgtca tcgtctgtga atgctgattt gtcggtatgt       720
     gcgtcctcag gaaatctgca agtagtacac ccttcctcaa ctccgttgag aattccacct       780
     gctatttctt cacctgtcgg tgatggcagg gttgatgtgg gattagaagc gaagtcgatc       840
     cctcggacct tgggaagcat caccatcggc tctgaaggtt ctcttgaagg cgctgtcgga       900
     ggagacgcgg aaaaggacgt tcagagaaag ggactgtcag ctttgccgtt cgtcgatctt       960
     cagccctatg cagatctgct aaaggttgaa gaaatcgttc caagtgctag tgctagcgtc      1020
     atgccgggta taaaacgtat cggtactcac tacaagcgat ggagtgtcga aacaggtgag      1080
     ctccggaggc agcaacgaca aacggaagca gagcatcgag ccatccagga ccttgttgtt      1140
     aaacaccagt tggacatcga cacaagacgg aaacgcgagg ttgagctagt gaaccaaatc      1200
     aaaagtttgc agtggcggca tgataacgag ctgcagctga tacgtgaatc ggaagaaggt      1260
     ttacgaatcc agcttaatca acgagaccgt gaacaggctg tgttgaaggt tcaggtggaa      1320
     accctggaga aacttatcgt cgaggagaag gagcggagtc gtgcgacgga agtgaaactt      1380
     caggagcttc tcatgctgcg caacaaggaa tgcgatgcgc tgcaactaca gctggcagag      1440
     ctggagagtg aaatccagtg tctgcgtgac agcgaacggc tgctgagaac ccaactagaa      1500
     gcagcagagc aacgcgaaaa tgaatcacac cgtctacgga acgaagcgat gaaggagtat      1560
     tgggacctgc acgacgaagt tcaacagttt atcagcggta ctcgagatgg gctgggagat      1620
     agcggttgtt ctcctccatt gcctcctccg cctgcgtctt ggtttgaatc tacgaatggg      1680
     ccaaacattg aaaattctat tcgcgtcgat tcaaatcatg catttcctcc tccgcctcct      1740
     ccattgtcgg tagattctag ttcgctcaat cgtcaacagg aatatgtgac tcaacctata      1800
     tcgtgtggtg ttggagtgat gaacgaacct gtccccattc ctcctacttc gagtatgttc      1860
     ccttccgtgc caacaaccca tcggcaaata ccctcgccga ctctggtgcc agctcagttt      1920
     ggaccaacgc cccaacagat tgccgctaga caagtagtca ccagagagct tccgattttc      1980
     tccggggatc cggtcgattg gccgctattt attagcagct accagcattc aacacagatt      2040
     tgtgggtaca ctgattcaga gaaccttctg cgtttgcagc gaagcctgaa aggtagtgcg      2100
     aaagattcgg taagcagttt tttgctccac ccgtcaacgg tgccccaagt catgtccact      2160
     ctgcaacagt tgtacggccg tccagaacag atcgtcaaca atatgatcgc caaggtgcga      2220
     gcaacacctc caccgaagcc cgaccggttg gagacgctgg tcagtttcgg gctgatagtt      2280
     caaaatctgt gcggacactt gaaagctgtt gggctagaga ggcatctagc aaacccgatt      2340
     cttctgcagg agctggtgga caagctacca gcaacggtaa aattcagctg ggcgctttac      2400
     caagagcaag ttccaatggt ggatctgaac gtattcagcg actacatggc gaaggtgtct      2460
     tcggcggcta gtggcgtaac gcagcttgca agtatcccac aaaaagctgt gaaagaagaa      2520
     cgaagccgac caaaggacaa atcgtttgtg aacgcgcacg tgacttcaga gcagccgaaa      2580
     gcaaatcacc gagaagtgac gcaaaaagcg ggatccggat ccaacagtgg acatctgaac      2640
     gagaagggtg ccaaatcttg ttccgtatgc aacgtcgaaa gccaccaaat cgaaaactgc      2700
     tcatcgttca aaaggctgga tttagacggt agatggaagg cagtgaaagc aaacaaactg      2760
     tgcgctcgtt gtctcacgtc acatgctcgg tggccatgta aaggagaagt ttgcggaatc      2820
     aatgactgcc caaagcgaca tcatcgttta cttcacttcg aacctccagt gacttctaag      2880
     actactagtg cggtggtctc cgttcatcgt cagctgtcgt catccacgct cttccgcatc      2940
     ctgccagtga ccttattcgg ggcaaaggga cagttcaaca ccttcgcatt tctagacgac      3000
     ggatcgtcag taacactcgt cgagcgatcg atcgctgaag ctcttggtgc cagcggagaa      3060
     gtcgagactc tgaacatcga gtggaccgga ggtattaaca agacaatcgc cggaacagag      3120
     gtcgtcacga tggagatttc cgaggctggt gtcaacaaac ggtacaagtt gtccgaggtc      3180
     tacacggtcg aaaatctcgg cttaccacag cagaccacag actatgctga gcttgctagt      3240
     cgatacacac atctcaaaaa gcttccggtg aaaagcttca ggtgtgctgt accaggaatc      3300
     ctaatcggac aaagcaacgt tcatcttctc gctacactga agttgcgtga agggaagttg      3360
     aatgaaccga ttgcaacgaa gaccaggatt ggatgggcag tgtgtggcag tctacggaag      3420
     ccacgagcta atacaataca cagacaacta catgtgcacg ccgaaccgaa cacagaggat      3480
     ctccacgagt acgtcagtcg ctttttcgac atcgagagtt tgggtgtagc tcttgtgcct      3540
     accgtgaaag gtgtggaaga acaacgtgcc tacagtattc tggatgcgac cacacgccgg      3600
     ttgaacagcg agaactttga aacaggcctg ctctggaagc atgactatgt agaatttcca      3660
     gacagtcggc cgatggcgga acgacgcttc agggtcctgg aaaagcgttt agctcgagac      3720
     ccacagcttt acgacagtgt tcgtcagcaa atagctgact ttaaagccaa gggttacata      3780
     cacgaagcaa cagcggaaga aattgaagga ttcgacctgc gtcgcacgtg gttcttaccg      3840
     attggagtcg tcgtgaatga aaagaagcct gggaaagttc gagtgatctg ggatgcagct      3900
     gcgaaagttg acggtgtatc attgaactcc atgttactca agggtccgga tcttctaact      3960
     ccgttgctat ccgtgatgtt tccgtaccgg gagcgtcaag tcgcagtgtc cgcagacatc      4020
     aaagagatgt ttctgcaaat ctcgatccgg ccggaagatc gtagcgcctt acagtttccc      4080
     tacagggatt ttcctgaact gccaatgagt acgatggtta ccgacgtggc aatattcgga      4140
     gcagcttgtt cccccgcaca ctcgcaattc atcaagaact taaacgcatc agaacaagaa      4200
     gcagagtttc ccagaggtgc agcggcggta aagaaaaggc attacgtgga cgactacgtg      4260
     aacagtcacg atacggcgga agaagctatc gaggcggcga aagaagtgat cgaggtgcac      4320
     aagcgtgcgg gatttcatat ccgaaattgg atgtctagtg acaaaagcgt ggtcgaacag      4380
     ctaggggaac cgaatcagaa aactgcaaaa gctatgctat cggaaaagga caccgggctt      4440
     gaacgggtgt taggaatggc gtggagacaa gatgaggatg tcttcaccta tacgttgcag      4500
     ttcggcgaga aggtgcgtat tctgatggaa aacaccacga ttcctacgaa aagggaaatg      4560
     cttcggctcg tcatgagcat ctacgaccca ttagggatag tggcgtcatt cgtaatccac      4620
     gggaaaattc tcatccaaga agtgtggcgg tccaaaatag attgggatag ctgtatttcc      4680
     gaagagattg ccacgcgctg gacagattgg accactgtgc tcaagaggat ggatggattg      4740
     cgtataccac ggtgctactt ctcaggatac gacccagcga gcttcaaaac tcttgagtta      4800
     cacatttttg tggacgcgag cgaacaggct tttgcagcag tagcatactt ccggatcgta      4860
     gaccagggac agatacgagt tgcacttgtc tcatcgaaaa cgaaagtcgc tccacttaga      4920
     ggactttcaa taccacggtt ggagttgatg gcagcgttgc ttggagctcg tctacgcagg      4980
     actgttgagg aaaatcacac gctgaaggta cagaaaacct gcttctggag cgattcatct      5040
     acggttggtt cgtggatcag gtctgaaacg cgtcgatatc gtcagtttgt cgccttcaga      5100
     gtcgatgaaa tactgagtct ctccaaaatt gatgagtggc aatggatttc gacgaagatc      5160
     aatgttgcag atgaagccac caagtggggg aaaggtccgt cgtgtaatgt ggacagccgt      5220
     tggttccagg gtcctgagtt cctctacagc aacagtgaag attggtcgat gactccagac      5280
     gaagatacgg atgaaagtga gatggaacta cgggaggcgt acgtcttcag tcatcatatc      5340
     aggaagccaa tgatagacac taacagattt tcgcggtttg agcgaatgtt gcgttctgta      5400
     gcatatgtcc accatttcgt agacagccta cgctacaaaa aggctcacgg atcggcggat      5460
     ttcgccggct tgacgagtgc agagcttcaa aaagcagaaa gaacgttgtg gtcgattgct      5520
     cagtccgagg cgtttcctga ggaagttgcg accctgaagc agaacccaaa tcgaagcact      5580
     ggacaacaga agcagataga agcgtccagc agtattgtga aacaatcacc attcgccgat      5640
     gaatacggag tattgcgggt aggcagtaga gcagcagaag cggaggtact cacgtacgat      5700
     gcaaagtttc cgattattct tccgagaaac catcggatta ccgaacttct gttggacttt      5760
     tatcatcgaa agtacggtca tgccaacgat gagactgtag tgaatgaagt gcggcagaaa      5820
     tttcacgtgc cacgtttgcg agtggaaatt cgcttagcca ggaaacgttg catgtggtgt      5880
     cgcgtctaca aatccacacc agtttgtcct aaaatgggac cgctgcctgc ggtacgatta      5940
     caaccggatg tacgcccgtt tacgtttgtt ggagtggatc tttttggacc atatttggta      6000
     aaggttggac gcagcgtggc gaaacgatgg gtctgccttt tcacctgcct tacggtcagg      6060
     gctattcatc ttgaggtagt tgccagtttg tccacggatg cgtgcaagaa ggcgatcaga      6120
     aggttcgtag cacgacgtgg ctctcctcaa gaaatatttt ctgacaacgg cacaaacatc      6180
     atcggagcga gtcgggagct tcaagacgag ttcagaagga tggctacgga attggggagc      6240
     acttttacga acgcccatac gcaatggcgg ttcaaccccc ctgctgcacc gcatatgggt      6300
     ggctgttggg agagaatggt acgggcagta aaggcagctc tagggtgcgt tccagtagta      6360
     cggaagctgg acgacgaatc gtttgcgacg gtattggctg aagcggaaag catggtcaac      6420
     tccagaccgc ttacgttcat cccactggaa acggccaacc acgaatcact gaccccgaac      6480
     cattttttgc tgttaagttc gaatggcgta cgagaacccg agaaatttcc gacggatgca      6540
     gggatggcgc tgagaagtag ttggaacacg gtgaagcata cgctggacaa cttctggcga      6600
     cgttgggttg tagaatatct accaactatt atacgtcgga cgaagtggtt ccgagatgtg      6660
     aaggcgatcg aggttggaga tctagttctc gtagtggacg aaaatgtgag gaaccggtgg      6720
     atacgtggac gagtgatcca aacgatgccg ggaaaggatg gcgtaccgcg tagagcggaa      6780
     gtgcaggtat cgggcggaac gttgaagcgg cctgttacga agttggctgt gctggacgtg      6840
     ataaggtctg gtgacgccgg accagatgtt aaggcgacac gggggggagg a               6891
//
ID   BEL-165_AA-LTR repbase;    DNA;    INV; 475 BP.
XX
AC   AAGE02018869;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-165_AA_;
KW   BEL-165_AA-I; BEL-165_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-475
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018869; Positions  128929  128455.
XX
SQ   Sequence 475 BP; 170 A; 79 C; 81 G; 145 T; 0 other;
     tgttcgccgc aacagcccat tgtagtggac acccctgttg atagagatca tgagccacta        60
     cctatgccca ctggatcgtt tgacgtcggc aaaacttcaa aatcaatgac tcgataaaag       120
     tgaaggattg tttatcaact gtgcgatagt cggtgataat tcgatttatt gattgatagt       180
     aaaaattatt tttggattta ttattatatg caaaggtgaa ttataaaact tgtacactta       240
     gaactagatt aaaacttaca tgctaattaa aacttacagg ctacagttta aatcgtttaa       300
     aacttagttg tgtgtgagat aaaaacatag tacggagact gaattgtaag taaaaattga       360
     atttatcatt aaacatgtcc caaataaaaa aaactatatt ctagcttaag ctgatcatac       420
     gcaaatttga gttaaagatc ttgctggaag aactcctacc gaatctccca caaca            475
//
ID   BEL-166_AA-I repbase;    DNA;    INV; 6278 BP.
XX
AC   supercont1.390;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-166_AA_;
KW   BEL-166_AA-LTR; BEL-166_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6278
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.390; Positions  477836  471559.
XX
CC   'TCTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..3775
FT                 /product="BEL-166_AA-I_2p"
FT                 /translation="MMVGHAKTCGVCTNGGTTASMMGCDMCDSWFHPNCIG
FT                 ASETNIEPDKTWRCSRCATDGEVTEPASACSLKSNRSSASSQARKQLLIQQ
FT                 LEEQRALKLKQRAEEDEIRKRRAEEDEAYLQQKLNIILEEDDDEEKMSRLS
FT                 SRASRKKVLDWLTNEQSIGKAPVTGSSIINVNQTHGTPVTVSGLQIPGAVV
FT                 TTSSTMVVPASTSTPNSETNGAPPPVSHAIVPTEATTTMLDARKPMLAFPV
FT                 TRAGITGYTAPPEHQVSGTFGNIANHPEIHSTKTRVRPALPAIPTGSNYAF
FT                 ESIPSIMPLTTQFATGLSLRSLPAGQPSMGFSAGAPAIQSTTIFSGDVASR
FT                 FNQIPPLSDPTAAVHSRPTIISQDPVPPRPTPSSVTYQPNHVSQPGVGDEQ
FT                 QQLGFPYQSVPTSAQLAARQVMPRELPVFSGDPQDWPLFSSSFYNTTAACG
FT                 FTDAENLARLQRCLKGHALDSVKSRLLMPESVPHVMETLRKLYGRPEVLIH
FT                 TLMQRLREVSSPKAENLQSIINFGMAVRNLVDHMFVAQLVDHLRNPMLLHE
FT                 LVEKLPPQLKMQWAWYKRMQTDVNLATFGEFMTELVDTASDVTLPSQTQLQ
FT                 QSLNKAGRDNHKLYAHAEAEGNPNMTATSHLRRSQVAESSKRACWYCSDEA
FT                 HEVAGCPQFKSLDLDGRWKVIRSKGLCRTCLIPHRRWPCRSLKECGVDGCR
FT                 LHHHALLHSPAASNVAVDHHLALQNHHSTLSICLFRYVPVTLENNGKKVET
FT                 FAFLDDGCQTTLMETELATELEIYGPTETLWLGWTGNISREERGSQRVNVN
FT                 ISGRGLKSKFKLSNVRTVQQLKLQGQTLDYDELQKRYPHMRGLPLYSYVDA
FT                 TPRIIIGIEHVQLLTTLKAREGRPNEPVAVKTRLGWCVYGKQAGECESVER
FT                 LHIHTEKHIENHELHELMKQFFEVDEAAVASPIESADDIRARNILERTTRR
FT                 IEGGFETGLLWKYDQPTFPDSYPLALHRLESLERRFNKDPELRERVVSLIH
FT                 EYEKKGYAHKITTEELESTESNRVWYLPIGVVRNPRKPEKIRLIWDAAARV
FT                 RGLCFNDMLLKGPDMLTSLFDVLLRFRQRSIAICGDIREMFHQVRIISSDK
FT                 QSQRFLFRKHQSEQPQIYVMDVATFGAKCSPCSSQAVKNKNAEEFAAEYPR
FT                 AAEAIINAHYVDDYLDSVDTVEEAVQLVTDVKHVHAKGGFEIRNFSSNSVD
FT                 VL"
FT   CDS           4237..6276
FT                 /product="BEL-166_AA-I_1p"
FT                 /translation="MRGLFANCTSRDSSLHSGCSQNQSGSTKTTLHSSAGA
FT                 TSWRNRLSSVEHNLYRIGPTDRVIWTDSATVLSWIKSDSRRYHPFVAFRVG
FT                 EILNSTNVDEWHHVPSKLNVADDATKWGSGPDFNPNSRYYVGENFLYLPMD
FT                 EWPKQTKQKYITKEELRTVFHLHREIPSPLINVSRFSNWNRLVRSTAYVLR
FT                 SLKKMRGAKLFGELTSDELLQAENFLWRQVQLEVYPDEYYSLQYNKQHPDD
FT                 TPKSIDKSSPLYQDSLFLDDAGVIRMFSRIGAAPTAPYEAKYPIILPKDHL
FT                 LTLLLVDSYHRRFVHINHETVLNEVRRRFRIPQLRRVIKRVANSCQRCKVK
FT                 KATPRPPMMAPLPEFRLTPNIRAFSYTGIDYFGPLLVKVGRSLAKRWVALF
FT                 TCLTTRAVHLEVIHSLSTKACIMAIRRFVARRGSPAAIYSDNGTCFKGASN
FT                 ILANQIQGIHEDCAVTFTNARTTWHFNPPSAPHMGGCWERMVRSIKVAMAG
FT                 IAEYPHHPTDEVLETVVLEAESIVNSRPLTYIPLDDMEQEALTPNHFLLYG
FT                 VQGVVQPRSVCEIEGATLRDSWKLTQCLVDHFWKRWVHEYLPTITRRTKWF
FT                 RPVKPLELGDLVLVVDENKRNGWLRGRIIEVKRGSDGQVRSAVVRTKDGTL
FT                 TRPAVKLALLDVRTIDDQDIEERAPVLHGEE"
XX
SQ   Sequence 6278 BP; 1757 A; 1511 C; 1571 G; 1439 T; 0 other;
     aacttttaag attaactgtt catcgagaaa gtccttcgaa gtaagtgatc ctgcgtagta        60
     agcagattag acctgcgaag taagcagtac agtgcccatt tcagaacctc cactgcacac       120
     cggaatccct cttttgttga tgatggtggg acatgctaag acctgcggtg tgtgcaccaa       180
     cggtgggacg accgcctcga tgatggggtg tgatatgtgt gattcgtggt tccaccctaa       240
     ctgcattggt gcaagcgaaa ccaatatcga accggacaag acctggagat gcagtcgctg       300
     tgctacagat ggcgaagtta cagaaccggc aagtgcgtgc agtcttaagt cgaatcgaag       360
     ttcggctagc agccaagcgc gtaaacaatt attgatacaa cagctcgaag aacagcgtgc       420
     cctgaaactg aagcaacggg ccgaggagga cgaaatccgt aaacgacgag cggaagagga       480
     cgaagcctac cttcagcaga agctgaacat tatcttggag gaagatgatg acgaagagaa       540
     aatgagccgt ttgagcagtc gcgccagccg taagaaggtc ctagattggc taactaatga       600
     acaatcaatc ggaaaagctc ccgttactgg ttcatccatt atcaacgtca accaaacgca       660
     cggaactcca gtcacggtat ctgggctaca aatcccagga gctgtggtta caacatctag       720
     tacgatggtc gtgccagcat ctacatcgac accgaattcg gaaaccaacg gagctccccc       780
     acccgtttct catgcaatag tgccgacaga agcgactact acaatgttgg atgctaggaa       840
     gcctatgtta gcatttccgg taactcgggc aggcatcacg ggttacaccg caccgccaga       900
     gcaccaagtg agtggtacat ttggtaatat tgcaaatcat ccggaaattc actccacaaa       960
     aacacgcgta agacctgcct tgccggcaat tccaactggt tcaaattatg cttttgagtc      1020
     aatcccgtcg ataatgccgc taacgacaca attcgccacc ggtctatcac ttcgaagttt      1080
     acctgctggt caaccatcga tgggtttctc ggctggcgct ccggcaattc aatcaaccac      1140
     gattttctcc ggcgatgtgg catcacgctt taaccaaatt cctcctctat cagacccaac      1200
     agccgcagta cattctcgac caactataat ttcgcaagat ccggtgccac caagaccaac      1260
     accgagctca gtgacatacc aaccgaatca cgtttcacag cctggagttg gtgacgaaca      1320
     gcagcagttg ggatttccat accaatcggt gcccactagt gcgcaattag cagcacgcca      1380
     agtaatgccc cgggaattgc cggtcttctc cggtgatccg caggactggc cgttgttttc      1440
     tagttcattc tataacacta cggcagcgtg tgggttcaca gacgctgaga atctggctcg      1500
     actccaacgt tgcttgaagg ggcacgcgtt agactcagtg aaaagtcgat tgttgatgcc      1560
     agaatcagtg ccccacgtta tggagacact gaggaaatta tatggacgcc cggaagtctt      1620
     aattcacact ctgatgcagc ggttgcgcga agtatcatct ccaaaagccg agaatctcca      1680
     atcaatcata aactttggaa tggctgttcg taacttggtg gaccatatgt tcgtggcaca      1740
     gctcgtagac cacctccgaa atccgatgct gctacatgag ctagtagaaa aactcccacc      1800
     gcaactaaaa atgcaatggg cgtggtataa acgtatgcaa accgacgtca acttagcgac      1860
     gtttggtgag ttcatgaccg aacttgtgga taccgcatca gatgtaacac ttccatcgca      1920
     aacacaactc caacagagtt taaacaaggc gggccgagac aaccataaac tgtatgctca      1980
     cgcagaagcc gaaggtaatc caaatatgac agctactagc catcttagac gttcacaagt      2040
     cgcagaatca agcaaacgag cttgctggta ttgctctgac gaggcgcacg aggtagctgg      2100
     ctgcccgcag tttaagtctt tagatttgga tggacgatgg aaagtgattc gttcgaaggg      2160
     cctttgtaga acatgtctta ttccacaccg tagatggcct tgtcgttcat taaaggaatg      2220
     tggggttgat ggttgtcgac tacaccacca tgctctactt cattcaccag cagcgtctaa      2280
     cgttgccgtc gaccaccatt tggccttgca gaatcatcac tcgacgctga gcatttgcct      2340
     tttccgctat gttccagtga cgctcgaaaa taacggaaag aaggtggaaa cgtttgcgtt      2400
     tttagacgac gggtgtcaaa ctacgcttat ggaaactgaa ttggcaacgg aactagaaat      2460
     ctatggacca acggaaacac tctggcttgg atggaccgga aacatatctc gtgaagaaag      2520
     gggttcacaa cgagtcaatg tgaacatttc cggtagaggg ctaaaaagca agtttaaact      2580
     gagcaacgtg cggactgtac aacaactgaa actgcaggga cagacgttag attatgatga      2640
     gttacagaag aggtatccac atatgcgagg tctcccactg tacagctacg tggatgcgac      2700
     accaaggatc attatcggca ttgaacatgt gcagctcctt accactctca aagcacgaga      2760
     agggcgacct aacgaaccag tggccgtcaa gacacgatta ggctggtgcg tatatggcaa      2820
     gcaggcagga gaatgtgagt cagttgaacg gctgcatatc catacagaaa agcatattga      2880
     gaatcatgag ctgcacgaat tgatgaagca gttttttgaa gtcgatgaag cagcagtagc      2940
     ctcgccgatc gagtccgcgg atgacattcg ggcccggaac attctggaac gtacaacacg      3000
     tagaatagaa ggaggatttg agactggctt gctgtggaag tatgatcagc caacctttcc      3060
     cgatagttat ccattggccc tccacagact agaatcgttg gagaggcgtt tcaacaaaga      3120
     tccagaattg cgggagcgag tggtatccct aatacatgag tatgagaaga aggggtacgc      3180
     tcacaaaatt actacagaag agctagagtc aacagaatcc aatcgggtgt ggtacctacc      3240
     tattggagtg gtgcggaatc cgagaaagcc ggagaaaatt cgcttgattt gggacgctgc      3300
     agcacgagtt cgtggtctct gcttcaatga catgctgttg aaaggaccag acatgttgac      3360
     ttcattattc gacgtcttgc ttcggtttag acagagatcc atagctattt gtggggatat      3420
     tcgagagatg ttccaccaag tccgtatcat ctcaagcgat aaacaatccc agaggtttct      3480
     ttttcgtaaa catcaatcgg agcagccaca gatctacgtt atggatgtgg ctacctttgg      3540
     cgcaaagtgt tcaccttgtt catcgcaagc tgtgaaaaac aagaatgcgg aagagtttgc      3600
     agcagaatac cccagagcag ccgaggccat catcaacgcc cactacgtgg atgactacct      3660
     cgatagtgta gatactgtcg aagaagccgt gcaactggtg acagacgtca agcacgtaca      3720
     tgcaaaaggt ggatttgaga tccgcaattt ttcgtccaat tcggtggatg tgctatagca      3780
     gcgtggagaa gcacgaagtc tggaaaagaa gtcgttgagc atggatgtat cggcatacgt      3840
     ggaacgtgtg ctaggcatgg tttggaaacc agccctggat ttgttcacct tcgacacggc      3900
     actgaaagat gaactggaac aacttttgga gcagaatgta acaccaacca agcggcaggt      3960
     actgcgattg gtaatgtcgc tgttcgatcc atgtggtttt atcgctcatt ttaccgtgca      4020
     tggtaaaata ctgatgcagc atatctggcg aagcgggaca gactgggatg agcaaatagc      4080
     tgacgattta cgtgaaatgt ggaaggattg gacacgactg ttgaagcagc tgatcgacgt      4140
     ccaagttcca agatgtttct ttggagaagg tgaaagtaaa ctacccgcca ctatccagct      4200
     ccatcttttc gttgatgcaa gcgaactcgc atatgcatgc gtggcctatt tgcgaattgt      4260
     acaagccgag acagttcgtt gcattctggt tgcagccaaa accaaagtgg ctccactaaa      4320
     accactctcc attcctcggc tggagctaca agctggcgta ataggctgtc gtctgttgaa      4380
     cacaatctgt accgcattgg acctaccgat cgagtcattt ggactgattc agcaacggta      4440
     ctttcctgga tcaagtctga cagtcgacga taccacccgt tcgtagcgtt tcgcgtgggt      4500
     gaaatcttaa atagcactaa cgtcgacgag tggcaccatg taccaagcaa actaaatgtg      4560
     gccgatgacg caacgaagtg gggcagtggc cctgatttca acccgaatag ccgctattat      4620
     gtcggtgaaa actttctgta tctaccgatg gatgaatggc caaaacaaac caagcagaag      4680
     tacatcacga aggaagagct tcggacagta ttccacctcc atcgagaaat accctcaccg      4740
     ctgataaatg tgtcccgatt ctccaactgg aaccggttgg tgcgatcaac tgcatacgtg      4800
     cttcgttcgc tgaagaagat gcgtggcgca aaactctttg gtgaattaac tagcgatgaa      4860
     ctactacagg ctgagaactt tctctggcgc caagtacagc tcgaagtata cccagacgag      4920
     tattattcgc tgcagtataa taaacaacac cctgacgaca cgccgaagtc aatcgataag      4980
     agtagcccac tctaccagga ttccctgttc ttagacgatg cgggagtgat taggatgttc      5040
     agtagaatag gggcggcacc cactgcccca tacgaagcta agtatccaat tatcctacct      5100
     aaagatcacc tcttaacgtt gctccttgtc gacagctatc accgccgatt cgttcatatt      5160
     aatcatgaaa ccgtgcttaa tgaggtgcgc cggcgattca gaatccctca actacgtcgc      5220
     gtgatcaaac gcgtcgcgaa ttcttgtcaa cggtgcaagg tcaagaaagc tactccgcgt      5280
     ccaccgatga tggcaccgct tcctgaattc cgactgacac cgaatattcg ggcatttagc      5340
     tacaccggca ttgactactt cggtccgctc ttggtgaagg tgggccgcag cttggcgaag      5400
     cgctgggtag cgcttttcac gtgcctcact acacgtgcag tgcacttgga agttatacat      5460
     agtctttcaa caaaagcatg catcatggca atccgtaggt ttgtagcccg aagaggttct      5520
     ccagcagcaa tctactccga caacgggaca tgcttcaagg gggccagtaa catattagcc      5580
     aaccaaattc aaggcataca cgaagactgt gcagttactt tcacaaacgc aaggacaaca      5640
     tggcacttta accccccgtc cgctccccat atgggcggat gctgggagcg aatggttcgc      5700
     tcaatcaagg tagcaatggc gggaattgca gagtaccctc atcatccaac agacgaagtg      5760
     ttagaaactg ttgtactgga ggcggaatct attgtaaatt cgcgaccgct aacgtacatt      5820
     ccgcttgacg acatggagca ggaggcctta acaccaaacc attttctcct gtacggcgtt      5880
     cagggggtcg ttcaacctag atcagtctgt gaaattgaag gtgcaacact acgtgatagc      5940
     tggaaactaa cccagtgttt agttgatcac ttttggaagc gctgggtcca tgaatacctg      6000
     ccaacaataa ccaggcgcac caagtggttt cggccagtca agccattgga actaggcgat      6060
     ttggtactag tggtggacga gaataaacga aatgggtggt tgagaggacg gatcatcgag      6120
     gtgaagcgcg gaagtgacgg acaggtgcgc agcgcagttg tgcgcaccaa agatgggaca      6180
     ctcaccagac cagccgtcaa gctggcactg ttggacgttc gtactattga cgatcaggat      6240
     atagaagaga gagcgccggt actacacggg gaggagaa                              6278
//
ID   BEL-166_AA-LTR repbase;    DNA;    INV; 698 BP.
XX
AC   supercont1.390;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-166_AA_;
KW   BEL-166_AA-I; BEL-166_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-698
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.390; Positions  471558  470861.
XX
SQ   Sequence 698 BP; 223 A; 127 C; 146 G; 202 T; 0 other;
     tgttgcatac cgttcttaac agacaaagcg taacgtgaat cccgagcgct cccttacatg        60
     aactgtcagc agaacgacgg gaacaatagg aaatcgcgga gcgagagatg cgtgtgtgta       120
     ctggtcgact ctgttcacca tgatacatcg gcgtatgctg tagaatagat gagaagccag       180
     ttaatcgcat aaatttagtg atcggtagca tcggatagaa ttgtgaaagc caaatttagc       240
     tgtttattaa ccggtatcac ggcagcctgg actctgcacg gtgatataca gtttgaaccg       300
     attgtgacac caatttgtgg gcaacccaga aagacaattg agcgctatag tgtagaacca       360
     atatttgcta tagagttgta agtgataaca taatttgtta tgccttaata tgaattcatt       420
     gctgatagca aaagctgtta tttcttatga tcgatccaat tattcatttt gttctcttca       480
     gccatgatta ggatcaatga aaatcgtgtt gaaattgagc tgaattagtt tgccttgcgg       540
     tttcttggag agcagaagaa acacttaatg taagcgttaa attcaattgt aatctttaaa       600
     aaactaatga aatctaataa atttcagctt aaaatctggg aaacatccaa cctgctaaaa       660
     agacagtttt cttccttgga aacccgcaaa ctcgaaca                               698
//
ID   BEL-167_AA-I repbase;    DNA;    INV; 6510 BP.
XX
AC   supercont1.348;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-167_AA_;
KW   BEL-167_AA-LTR; BEL-167_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6510
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.348; Positions  904168  897659.
XX
CC   Positions [5558-6118] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           675..5414
FT                 /product="BEL-167_AA-I_2p"
FT                 /translation="MNQSPKSVGCAPDVTVVKTPSNNRISQCAPGTSRNNQ
FT                 RSNPPPRDAASNRSVGKSSRRSDTKRRIELQLQKLEEEKTLQLKYLEQKYS
FT                 LLEELENESSPAASEINSFVDNATKVEQWMADTANCGDDSGLVDVNVVDEV
FT                 GLNYSSGEEAEPESRVKFSEVQAHSSTRLTKSRIPNRTFDLHIPFSHPSRE
FT                 ETVSNYQQVQRAQSTGRTEIPFSHPPREAMVQTYQRMPRHQTTGRSEVHFQ
FT                 AANHREAAAYRNPQNFIPRQGSTPVHQSRSMDPAVMNDNEDIVCSLNRSQM
FT                 AARQAVSKDLPEFSGNPEDWPLFFSIFNSSTQLCGFSNEENMLRLRKCLTG
FT                 KALDAVKCRLLHPSNVQGVMTTLKMLYGRPETIIQAIVRKIRSLQSPNIER
FT                 LDTVIQFALNVENLVATVEACEIGDFMYNASLRYELVEQLPPTLKLDWAKN
FT                 SRNNPSPNLLDFSLWLRSIAEDASAVSISVGSEYRSRAGKKDGYLNLHAEE
FT                 EPMGNKSNAQTTQKSTKEVIRECVGCKGSCTTLAQCERFKELGCDSRWAVI
FT                 REFKICRKCLRQHNGPCKQRKECGTDGCSFLHHPLLHSDRKQSTGSNPMSA
FT                 ATPAQSQSNPTTNTSPTCNVHQAQSEILFRIVPVLLHGPSKTLKTYAFVDD
FT                 GSELTLMEQELANELGVQGPKKSLCLRWTGGTNRTEGLSQVVSLQVSSITN
FT                 PTNKFELSAVHTVGNLQLRPQTLLVPEMQKKYRHLDGLPLESYQEVSPRLL
FT                 IGLDNASLGNVMKCREGKLNEPIAIKTRLGWTIYGSCSRDTNASAQINHHS
FT                 VELRQCDCKSDEDLHDTMKQYFSLESLGISKPNQLLLSNEDRRANDLLETL
FT                 TRRTNGRYESGLLWRYDNVRLPDSRPMALRRWECLDRRMQKDRQLAQALTE
FT                 KVNDYLAKGYIRKLSTEELETRHARIWYLPMFPVVNPNKPGKTRLVWDAAA
FT                 TSHGVSLNSVLLKGPDQLTSLLSVLIRFREFRVAVSGDIREMYHQVQIRPA
FT                 DQHCQRFLWKENESDSSPSTYVMQVMSFGACCSPSVAQYVKNTHAMKYEHN
FT                 YPEAVHAIIHQHYVDDMLISAETEDKAIQLADEVKKIHESGGFEMRNWVSN
FT                 STTVVAALEGEGAKEKSMSIGEANTNEKVLGMWWDTSSDCFMFKLSARHDA
FT                 TLLSGCKRPTKREVLRTLMMVFDPLGLISHFLMFLRTLLQEIWRSSVDWDE
FT                 QIHDTHFEKWLSWLRILPQVASIRIPRCYRSVTSLETGGIVQMHTFVDASE
FT                 NGFAAAVYLRFEEGSIVECSLAGAKTRVAPLKFISIPRSELQAAVIGVRLA
FT                 DTILGSLTTKVQKRFFWTDSRDVMCWLHSDHRRYSQYVGVRISEILDTTNL
FT                 GDWRWVPTKLNVADEGTKWKGTLDLTNSSRWFRGPEFLWKPEEEWPASSQS
FT                 VQVTNTELRPYLNLHIKTLEPIVNVARFSRWSRLLKTTAYVFRAIKNLQRS
FT                 IRKTSRTTGPLIREELVRAESYLYQIAQRSTYDEEILAMSSNPSGQISKSS
FT                 PLFRLCPFMDEKGGSCGSVGRTNACQLKIVASSILSFFLVSTVSQDFWYLT
FT                 FIRNFCTKITRQQ"
FT   CDS           5528..6508
FT                 /product="BEL-167_AA-I_1p"
FT                 /translation="MGDLPSCRLAVYSRPFSHMGVDYFGPMTVSIGRRTEK
FT                 RWGVLVTCLTVRAVHLEVAHSLSADSCIMALRNVIARRGVPVVIYSDRGTN
FT                 FVGSNTELKAALEVLDQEQLIKEFTTTHTKWSFIPPLSPHMGGAWERLVQT
FT                 VKPNLGRLRSNRRLTEETLRSMLIEVEQIVNSRPLTDIPLDDDQSPVLTPN
FT                 HFIMGSSNGLPPWTCFDDNPVSLKENWRLSQIMANQFWKQWLHDYLPSLTR
FT                 RAKWFTEVKPIEINDIVVIVDERLPRNCWPKGRVIATKVAQDGQVRGATVQ
FT                 TISGIYERPAVKLAVLDVGVRGNATQMGLRCIKGG"
XX
SQ   Sequence 6510 BP; 1866 A; 1553 C; 1578 G; 1513 T; 0 other;
     gatcttgtaa ccttaaacta atgtcttctt cttgtgctgc aggaattttg taactggatt        60
     aataaacttc catttcacaa aattgggatt ttcgtcttct atcgccaaca aattacaaaa       120
     ttcttcaaaa gactacggaa tggcgagcaa acattccagc ggtagctccc atggccgacg       180
     ggatgccggt acacaaggcg gtgtaaccga tgtaggtgat gcgaatagta gcagcaagaa       240
     ccatccggag caaattcagc cggagacgac aggacaatta cagttggaga atgctgtcca       300
     gccaagtaca cctgcagcgc aaggacagac agtaccacag acggtaatcc atcaaagaag       360
     tatgtctcag tcggaggtag tcgctgaatc tcttcctcgc caacagcagc aggtaatccc       420
     caccgaagtg gtgagtaccg aaaagggagc tattcataag tctcgtggaa tacaaccctt       480
     agctatgaaa aataaagatt tagctgaggt tccccatatc ccccctgtca acgtgcctct       540
     cagacgaaat cccccgcgcc gcgtccgcga aaagatcttg agcagttgcg ggctatgcac       600
     cgaggcagac gacgacagaa tggtccagtg tgacgattgc gaaacttggt accacttcga       660
     gtgcgtcgac gtaaatgaat caatcgccga aatcagttgg ttgtgccccg gatgtgacgg       720
     ttgtaaagac cccaagtaat aaccgaatat cacagtgtgc tccaggaact tcacgaaaca       780
     accagcgttc gaatccacct cccagagatg ccgcttcgaa caggtcggtt ggtaaatcca       840
     gtaggcgcag tgacactaaa agaagaatcg agctgcaact acaaaaactt gaagaagaga       900
     agacattgca gttgaagtat ctggagcaga aatacagttt gttggaagag ctagagaatg       960
     aaagttcacc tgcggcaagc gaaataaatt cgtttgtcga caacgcaacg aaagtggaac      1020
     aatggatggc tgacacggct aactgcggcg atgattctgg ccttgtcgac gtcaacgtag      1080
     tagatgaagt cggtttgaac tactcttcgg gcgaagaggc agaaccggag tccagagtga      1140
     agttttccga agtgcaagca cactcttcca caagactcac aaaatctaga ataccgaaca      1200
     gaacttttga tttgcatatt ccgttctcac acccctcccg tgaagaaacg gtctcaaatt      1260
     atcagcaagt gcagcgtgca caatccaccg gtcgtacgga aattccgttt tcacaccctc      1320
     cacgtgaagc aatggttcaa acctaccagc gaatgccgcg tcaccaaacc accggtcggt      1380
     cagaagtcca ctttcaagcc gcaaaccata gagaagctgc agcctatagg aacccacaga      1440
     atttcattcc acgacaaggt tctactccag tccaccagtc aaggtctatg gatcccgcgg      1500
     tgatgaacga taatgaggat atcgtctgct ccctgaatcg cagccagatg gccgcgagac      1560
     aagccgtttc gaaggacctg ccggagttta gtggaaatcc agaagactgg ccgctattct      1620
     tttcgatctt caattcgtcc actcagctat gtggattttc aaatgaagaa aatatgctaa      1680
     ggcttcgaaa gtgcctcaca ggcaaagcct tggatgcagt taagtgccgc ctacttcatc      1740
     cctccaacgt acaaggagta atgaccactc tcaagatgct ttacgggagg cccgaaacga      1800
     ttatacaagc cattgttcgg aaaatccgct cgctacagtc tccaaacatc gaaaggctgg      1860
     ataccgtaat ccagtttgcg ctaaacgtcg agaatttagt cgcaacagtc gaagcatgtg      1920
     aaataggcga tttcatgtat aatgcatccc tgagatacga gctggtggaa caactgccac      1980
     caaccctaaa gctagattgg gcaaaaaatt cccgcaacaa cccaagtccc aacttgttgg      2040
     acttcagctt atggttgcgg tccattgcgg aggatgctag cgctgtatct atttctgttg      2100
     gcagtgaata tcgttccagg gccggaaaaa aggacggtta cttgaatctt cacgctgaag      2160
     aggagccaat gggtaataag tcaaatgctc aaacgactca gaaatctacc aaagaagtta      2220
     ttcgagaatg cgtaggatgc aaaggaagct gcacaactct tgcgcagtgt gaacgcttca      2280
     aggaacttgg atgtgactct agatgggcgg taataaggga gttcaagata tgtcgaaagt      2340
     gtctgagaca acataacgga ccctgtaagc agcgaaaaga gtgcggaacg gacggctgtt      2400
     cattcctgca tcaccctcta ctacatagcg acaggaagca gtcgacgggt tcaaacccta      2460
     tgtcagcagc aacgcccgcg cagtcccaga gcaatccgac aaccaataca agtccgacct      2520
     gcaacgtaca tcaagcacag tctgaaatct tgtttagaat cgtcccggtt ctccttcatg      2580
     gcccatcgaa gacgctgaaa acatatgctt tcgtagacga cgggtctgaa ctcacgttga      2640
     tggagcaaga attggctaac gagcttggag tacaggggcc gaaaaagtct ctatgcttgc      2700
     gatggactgg aggaaccaat cgaacggaag gtctctctca agtagtaagc ctccaggttt      2760
     caagcattac taatcccacc aacaaattcg agctttcagc tgtacatact gtcggaaatc      2820
     tgcagcttcg accgcaaaca cttctggttc ccgaaatgca gaaaaaatat cgccatcttg      2880
     acggtttgcc actagagtcg tatcaagaag taagccctcg tctcctcata ggtttggaca      2940
     atgccagttt gggaaatgtg atgaaatgtc gcgaaggaaa gctaaacgag cccatagcga      3000
     tcaagacgcg acttggatgg acaatatatg gaagctgctc cagggataca aacgcatctg      3060
     ctcagatcaa tcatcacagc gtagaacttc gccagtgtga ctgtaaatcg gacgaggatc      3120
     tgcacgatac catgaagcag tatttctcgt tagaaagctt aggaatcagc aagccgaacc      3180
     aactattgct ttccaatgaa gaccgcaggg caaatgattt gctggaaaca ttgaccagac      3240
     gtactaacgg acgatatgaa tcgggccttc tatggcgata cgataacgtc cgactcccag      3300
     acagtagacc tatggcccta agacgttggg agtgcctaga ccgtcgtatg caaaaggatc      3360
     gtcaacttgc tcaggctcta accgagaagg taaacgacta cttagccaag ggttacatca      3420
     ggaaactttc tacagaagaa cttgagacac gccacgcccg aatctggtat cttccgatgt      3480
     ttcccgttgt aaatcctaac aagccgggca agacaaggct tgtctgggat gctgcagcta      3540
     cttctcatgg agtttctcta aattccgtcc tcttgaaagg acccgaccag ttaacttctc      3600
     ttctatctgt tttgattcgg tttcgtgagt ttcgggtggc agtctccgga gacatccgcg      3660
     agatgtacca ccaagtccaa ataaggccag cagatcagca ctgtcaacgt ttcctttgga      3720
     aagagaacga gtctgattca tctccgagta cctacgttat gcaagtaatg tctttcgggg      3780
     cgtgttgttc gcccagtgtc gctcagtacg tcaaaaacac ccatgcaatg aaatatgagc      3840
     acaactaccc cgaagcagtc cacgccatca ttcaccagca ctatgttgat gatatgctga      3900
     tcagcgctga aacggaggat aaggcgatac aactagcgga tgaagtgaaa aagatccacg      3960
     aatccggagg cttcgagatg cgaaattggg tctcgaactc aacgacggtt gttgcagcgc      4020
     tagaaggaga gggggctaag gagaaaagca tgagcattgg ggaggccaat accaatgaaa      4080
     aggttcttgg aatgtggtgg gatacttcgt cggattgctt catgttcaaa ctgtccgccc      4140
     gccacgatgc tacgctgttg tcgggctgca aaagacctac gaaacgcgag gttttacgca      4200
     cattaatgat ggtgtttgac ccactcgggt taatcagcca cttcctgatg tttttgcgaa      4260
     cacttttgca agagatctgg agatcatccg tcgactggga cgaacaaatt cacgacactc      4320
     atttcgaaaa gtggctttca tggctgcgaa ttcttcctca agtggcaagt atccggatac      4380
     ctagatgtta ccgttccgtt acgtccttgg aaacaggcgg aatagtccaa atgcatacat      4440
     ttgtagacgc cagcgaaaat ggtttcgcgg cagccgtata cctgaggttc gaagaaggga      4500
     gtattgttga gtgctcactg gcgggagcga aaaccagagt tgcaccacta aaatttatat      4560
     cgataccacg ttccgaacta caagctgcag tcataggagt acgactggcg gacactatac      4620
     ttggatctct cactaccaaa gttcagaagc gctttttctg gactgattcc agagacgtaa      4680
     tgtgttggct tcattcggac catcgacggt atagccagta tgtgggagta cgaatcagcg      4740
     aaattctgga cacaacaaat ctcggtgatt ggcgttgggt accaacgaag ctaaatgttg      4800
     cggacgaagg gactaaatgg aagggcactc tagacctgac aaattctagc cggtggtttc      4860
     gtggacccga gtttctctgg aaaccagaag aagaatggcc cgcatcatca cagtctgttc      4920
     aagtcaccaa cacagagctt cgcccttact tgaaccttca tattaagacc ctcgaaccga      4980
     tcgttaatgt ggctcgcttc agcaggtggt ctagattatt gaaaactaca gcatatgtgt      5040
     tcagagctat caaaaatttg cagcgaagta ttcggaaaac ttctcgaacg accggaccac      5100
     tcattcgcga agaactagtc agagccgaaa gctatctgta tcagatagcc caaagaagca      5160
     catatgatga agagatcttg gcgatgtctt cgaatccatc aggacaaatt tctaaaagta      5220
     gccctctttt ccgactttgt cctttcatgg atgaaaaagg gggttcctgc ggatccgtgg      5280
     gacgaacaaa tgcttgccag ttaaagatag tagcatcgtc aatcctatca ttcttcctcg      5340
     tgagcacggt gtcacaagac ttctggtatt tgacgttcat cagaaatttc tgcaccaaaa      5400
     tcacgagaca gcaataaatg aattgaaaca gcgctattac attcctcgag ttaaagctgt      5460
     ctacaaatcg gtacgcaaga actgccaatt ctgcaaaaac gaacgaattc gtccctgcgc      5520
     gccgctgatg ggtgacttac catcttgccg ccttgctgtc tacagccgtc cattcagtca      5580
     tatgggggtg gactacttcg gccccatgac ggtttccatt ggtcgccgaa cagagaaacg      5640
     ctggggcgtc ttagtcactt gtcttactgt gcgtgccgtc catttggaag ttgcgcactc      5700
     attatctgcc gactcttgta ttatggctct tcgcaacgta atcgctagaa ggggtgtacc      5760
     ggtcgtcata tacagtgacc gtggaacgaa ttttgtgggg tccaatacag aactgaaagc      5820
     cgctctcgag gtgttggatc aagaacagct cataaaggaa ttcaccacaa cgcacacgaa      5880
     atggagtttc atacctcctt tgtctcctca tatgggcggg gcatgggaga gattagtcca      5940
     aactgtgaaa ccgaatcttg gcaggctgcg ttcgaatagg aggctaactg aagaaacgtt      6000
     gagaagcatg ctgatagaag ttgagcaaat cgtaaattca aggccgctga ccgatattcc      6060
     ccttgacgac gatcaatctc ctgtactgac gccgaaccat ttcattatgg ggtcatccaa      6120
     tggactaccg ccgtggacct gtttcgatga taaccccgta tcattgaagg aaaactggcg      6180
     cttgtcccag atcatggcaa accagttttg gaaacagtgg ctccatgact atctaccatc      6240
     tttaactcgt agagctaaat ggtttacgga agtgaagcct atcgagatca acgacatcgt      6300
     ggtaattgtg gacgaacgtc tccctcgcaa ttgctggcca aaaggacgag tgattgctac      6360
     taaggtagca caggatggcc aggtcagggg agctacagtg cagacgatta gcggaatata      6420
     tgaacgacct gcggttaagc tcgctgtact agacgttggc gtaagaggaa atgctactca      6480
     gatgggtctt cggtgcatta aaggggggag                                       6510
//
ID   BEL-167_AA-LTR repbase;    DNA;    INV; 532 BP.
XX
AC   supercont1.348;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-167_AA_;
KW   BEL-167_AA-I; BEL-167_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-532
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.348; Positions  897658  897127.
XX
SQ   Sequence 532 BP; 185 A; 89 C; 98 G; 160 T; 0 other;
     tgttggtcgc gccacgtcta ccagcaacct taatacaccc ctgactgtac caagagataa        60
     cgctagccac accggtcgat cgatggagga tcgtccgtct aaggacggtc acagtagagg       120
     tcataacgaa caataatgaa ttgtacatgc ataaaacaaa tgaacttcag tgaaattggt       180
     tgctaaaaat ttgttgctcc tacttaaaac tagatttagt tctacataca atctaatttt       240
     cgttatactg tttgcctaaa gggtaaaagt gataaactat tagcctagtg tgaattgaac       300
     ttaattttct actatttaca aataggaatt gaactacgag tttgagaatt ctatgcagtt       360
     tatattagtg ctttcttaaa taatctacga ggtaaaaaga gactggcaca acacaatgta       420
     aaattactaa ttatgactaa atttattaag gttactacac atttattgga aaactacaaa       480
     ctactgaatt gttgggtgat agcgagaagt actgaagtag gtattaggta ca               532
//
ID   BEL-168_AA-I repbase;    DNA;    INV; 6448 BP.
XX
AC   AAGE02024719;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-168_AA_;
KW   BEL-168_AA-LTR; BEL-168_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6448
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024719; Positions   33753   27306.
XX
CC   Positions [5498-6055] - Integrase core
CC   'AAATC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..6448
FT                 /product="BEL-168_AA-I_1p"
FT                 /translation="MSKSTKSVKSTKSARSTRSAKNHCQACKAIDTDRMVS
FT                 CCHCGSWWHFECVGVNDSIAEPDRVFNCPKCQKPSVQVPVRTTVGKVALSV
FT                 NSSTSSRAAKARLELEKLEAQKALAMKRLELQRREQERKHKEAELLFQQKK
FT                 AQEEASLQQLELQLEETMMNESFRLREIIAAEEEEDDDNESVESVQSSSSK
FT                 VRQWRAFNSTMVPSTEQAPKITPTDIETTTATGIIPAGQDGSKQPTSNQGF
FT                 LEEAMASAVSGISLGQSGMEPTLGGIIGRIESTIAPTGSMSNTGLPAALPG
FT                 FSLSRNYTPLKQASNDSSKTPIVPNPDSLSYLRQSFVPNPSVGTPVDNLSA
FT                 NAQLSGLNAVNQISANQSGSALAVTDRLRGSLPRQSNPERLEQGHQREQSV
FT                 APSQLGPQRNLDPGPSIPAQSRQGQRNAPAEPPCVQWEPPRDPDAPIFERA
FT                 VFPVVPAYCGPTPQQLAARHVMNKELPIFTGNPEDWPLFVSAYYNSTQACG
FT                 FTDAENLARLQRCLKGHAFESVQSRLLLPSSVPHVLATLETLYGRPELLIH
FT                 ALLQKLRRVPAPKQDRLDTLIGFGIAVQNLSDHLEAGRHESHLNNPMLLFE
FT                 LVEKLPANMKLDWSLYKQRCGEVNIRSFAQYMQTLVRAATDVTLQYDPRQQ
FT                 QSQQQRTTKEKSSKDKNFCGAHAAEGAAEPEAVGNATHSSKAACLIYKNPD
FT                 HRVKDCIEFSKKTVDERWKLIQQFSLCRLCLGAHGRRPCKIRKQCDMSGCQ
FT                 LHHHPLLHSEKKHRGKRSLDDSKKSKRDNNSIAPGVKIERSNSVHEPSEAK
FT                 PSGSKVATNYHFSGKTTLFRIIPVTLHGNNRSVTVFAFLDDGSEKTLVDEE
FT                 VVKQLGVVGEKQPLCLQWTANVKRTEANSQRVALEIAGRSCSAKHSLSDVR
FT                 TVSKLELPRQSLRYADLAEAFPYLKGLPIDDYDDAQPRILIGNDNAHVTST
FT                 LKLRDGQPGEPIAAKSRLGWTVYGSSLEKTVDRVHSFHICECQEDNQTLHG
FT                 LVEQFFSVESLGISETPPVESAEIQRSKRILIETTKRVGQRFETGLLWKYD
FT                 YFEFPDSYHMAVRRLQCLERRMQNETVIGESVRKQMSEYQEKGYIHKATKK
FT                 ELDDSDPRRTWYLPLGVVINPKKPSKIRIFCDAAAKVDGISLNTMLMKGPD
FT                 LLNTLLDVLFAFREKRVALCADLKEMFHQIKIRPEDRHAQRLLWREDPAEA
FT                 PDVYLMDVATFGATCSPCSAQFVKNRNAEEHAKEYPAAAEAIIRKHYVDDY
FT                 LDSADNEEEAVKLAQDVKHVHSLGGFNLRNWLSNSKDVLARVGEGDPVPNL
FT                 ITEKCLQLDKHSSTERVLGMFWKPEEDVFTFSTAVASEADHPTKRQALRVV
FT                 MSPFDPAGLLSFFLIHGKILIQDLWRAKTDWDQPIPEKLLGKWKRWINLFR
FT                 YMDQISIPRCYFPQRSIQDIGSLQLHIYVDASEEAYACVGYLRALFPDGIH
FT                 VALVGGKSKVAPLKAHSIPRLELMAAVIGVRLAKTILNGHSLKVDKVFYWS
FT                 DSKTVLAWINSDHRNYRQFVACRVGEILSKSRAEQWRWISTKKNVADEATK
FT                 WGKGPCLSNNSRWFRGEEDLYLPEEQWITKVLPANQTTDEELRSCMVHREA
FT                 LAPQLVKWDRFSKWTRLQRSVAYIHRYVQNLRRTANKKQRMEGLLTQEELS
FT                 NAEATIFRWTQSEMYSDEVTALVRARNERTNQQVRLEKTSLIRKLSPFMDE
FT                 SGVIRSDSRIAAATYVSYDTRFPIILPKEHRVTHLLVEWFHQNYLHANGET
FT                 VVNEKNQRFHISQLRSFVRTVARKCTMCKMKKPVPAIPRMAPLPAARIQAY
FT                 VRPFSFVGVDYFGPISIRVNRTIAKRWVGLFTCMTTRAVHLEVVHTLSAES
FT                 CKMAIRRFIGRRGAPVEIRSDRGTNFVGSSNELKQEMGKINHQLAETFTNA
FT                 NTKWVFNPPGAPHMGGAWERLVRSVKTALAAMDTSRTPNEETLATILIEAE
FT                 SVVNSRPLTYIPLETAQQEALTPNHFLLLSSNGVAQTPRNLTDPKQACRND
FT                 WNLCRTMVDQFWRRWVREYLPTIARRTKWFEEVKPIEVGDLVVIVEEKIRN
FT                 GWVRGRVAKISVGRDGRVREAVVQTANGMVHRPVSKLAKLDVAVSKAEPEI
FT                 PDQPYGSGN"
XX
SQ   Sequence 6448 BP; 1854 A; 1516 C; 1720 G; 1358 T; 0 other;
     aatctaaaag atcgttcaag atcgtaacga catcaacatg tcgaaaagca ccaagagtgt        60
     gaaaagtacg aagagtgcga gaagcactcg gagcgccaag aaccactgcc aggcttgtaa       120
     ggcaatcgat accgatcgga tggtcagttg ctgtcactgc ggttcctggt ggcattttga       180
     atgcgtgggc gtcaacgata gcatcgcaga gccagaccgg gtgttcaatt gtccaaagtg       240
     ccagaaacca tccgtacagg tcccggtacg gacaacagtg ggaaaggtgg cactaagcgt       300
     aaactcatcg acttctagca gagcagcgaa ggcacgatta gagctggaga aactcgaggc       360
     ccaaaaagct ttggccatga agcgtctaga acttcagcga cgggaacagg agcgcaagca       420
     taaggaagcg gagttactat tccagcagaa gaaggcgcag gaagaggcat cactccaaca       480
     gctggagcta caattggaag agacgatgat gaacgaatca ttccgcctac gggagattat       540
     cgccgcagaa gaggaggagg acgacgacaa cgagagtgtt gaatccgtgc aaagctcatc       600
     cagcaaggtt cgacaatggc gagcttttaa ttcgacaatg gtaccctcga cggaacaggc       660
     tccgaaaatt acacctaccg acatcgaaac tacgacagcg accggaataa tcccggctgg       720
     gcaggacggc agcaagcaac caactagcaa tcagggattt ctggaagagg ctatggcctc       780
     ggcggtatca ggtatttcgt tagggcaatc aggtatggag ccaacgttag gaggaataat       840
     tggtcggata gaaagcacca ttgcaccgac aggtagtatg agcaacacgg gtcttccagc       900
     ggctctccca gggtttagct taagtagaaa ctatactcca ctaaagcagg cgtctaatga       960
     tagttctaag actcctattg ttccaaatcc tgactcactc tcgtatctcc gtcagtcctt      1020
     cgtgcccaat ccctcggtcg gtaccccggt tgataatctg tcagcaaacg cgcaattgtc      1080
     cggtttgaac gctgtgaacc aaatcagtgc gaatcaaagt ggtagtgcat tagcagtaac      1140
     agatcgacta cgaggatcat taccacggca gtcgaatcct gaacgccttg aacaagggca      1200
     ccaaagggaa cagtccgtag caccgagtca actggggccg caacgaaatc tagatccagg      1260
     accatcgata ccagctcaat caaggcaagg acaacgaaat gccccggcgg aaccaccgtg      1320
     tgtacaatgg gagccgccga gagatccaga tgccccaata ttcgagcgag ctgtatttcc      1380
     agtagtaccg gcgtactgcg gaccaacacc tcaacaattg gctgccaggc acgtgatgaa      1440
     caaggagctg ccaattttta ctggtaatcc ggaggattgg ccgctattcg taagcgcgta      1500
     ttacaactct acccaagcgt gcggcttcac agacgcggaa aatctggcaa ggttgcagag      1560
     gtgcctgaag ggacatgctt ttgaatcggt gcagagccga ctgctattgc cgtcaagtgt      1620
     tccacatgtt ctcgctactt tggagacact ctatggcaga ccggagttgc ttattcatgc      1680
     gctactgcag aagcttcgac gagttcctgc accgaagcag gatagattgg acacgttgat      1740
     cggttttggt attgcggtgc agaatctcag cgaccattta gaagctggaa gacacgaatc      1800
     gcatctcaac aacccgatgt tattgttcga gctggtagag aagcttccag caaacatgaa      1860
     gctggattgg tcgctgtata agcaacgatg tggagaagta aatattcgct cgttcgccca      1920
     gtacatgcag actttggtac gtgctgcaac cgacgtcact ttacagtacg atccaagaca      1980
     gcagcagtct caacagcagc ggacaactaa agagaagagc agcaaagata agaacttctg      2040
     tggtgcccac gctgcagagg gtgcagcgga accggaagca gttggaaatg cgacgcactc      2100
     atcaaaggca gcttgtctaa tctacaagaa tccggatcat cgagttaaag attgtataga      2160
     gttcagcaag aaaaccgtag atgaacgctg gaaactaata cagcagttca gcttgtgtcg      2220
     actttgtctg ggagctcacg gaaggagacc ctgcaaaatt cgcaagcaat gtgacatgtc      2280
     tgggtgccaa ttgcatcatc atccgttgct gcattctgaa aagaaacata gaggcaaacg      2340
     aagcttggat gatagcaaga aaagcaaacg agataacaac tccatagcac caggtgtcaa      2400
     gatagaacga agcaactccg tgcatgaacc atctgaagcg aagccgagtg gatcaaaagt      2460
     cgctaccaac taccatttca gcgggaaaac gacgctgttt cggataatcc cagtgacact      2520
     ccacgggaac aaccgttccg tgactgtatt cgccttttta gacgacggat cggagaaaac      2580
     attggtggat gaagaagtgg tgaagcaact cggcgttgta ggagaaaagc agccgttgtg      2640
     cctccagtgg accgcaaacg taaagagaac ggaagcaaat tctcaacgag tcgctttaga      2700
     aattgcggga cgctcatgtt cagccaaaca ttccctgtcc gatgtgcgca ctgtaagcaa      2760
     gctggaatta ccacggcagt cgctacgata cgctgatttg gcggaagcat ttccatacct      2820
     aaagggtctg ccgatcgacg attacgatga cgcgcaacct cgcatcctca ttggcaacga      2880
     taatgcgcat gtgacatcaa cattgaagtt acgggatgga cagccgggcg aaccgattgc      2940
     cgccaaatca cggttagggt ggacggttta tggatccagt ctagaaaaaa cagtggacag      3000
     agttcacagt ttccacattt gtgaatgtca ggaggacaat cagacgttac acggactggt      3060
     ggagcaattt ttctctgtgg aaagcctggg aatatccgag acgccgcctg tagagtccgc      3120
     tgaaattcaa cgatccaagc ggattcttat agaaacaacc aagcgggttg gtcagcgatt      3180
     tgagacgggg cttctctgga agtatgacta tttcgaattc ccggacagct accacatggc      3240
     agttcggcga ctgcaatgtt tggagaggcg catgcagaac gaaacagtca tcggagagag      3300
     tgttcggaag caaatgtccg agtatcagga gaagggatac atccataaag cgaccaagaa      3360
     agagctcgat gactcggatc caaggcgtac ttggtattta ccgttaggag tggtaatcaa      3420
     cccgaagaag ccatccaaaa tccgaatttt ctgcgatgca gccgcaaaag tggatggaat      3480
     ctcccttaac acgatgttga tgaaagggcc cgatcttcta aacacgctac tagatgtact      3540
     cttcgccttc cgagaaaagc gtgttgctct gtgcgcagat ctgaaggaaa tgttccacca      3600
     gattaaaata cgaccagaag atcgacatgc gcagcgcctg ctctggcgtg aagatcccgc      3660
     tgaagcaccc gatgtctatc taatggacgt cgccacattc ggagctacat gctcaccgtg      3720
     ttcagcacaa tttgtaaaga acagaaatgc agaagaacac gccaaggagt acccggccgc      3780
     agcagaggca atcattcgaa agcattatgt ggatgactat ttagacagtg ctgataatga      3840
     agaagaggct gtgaaactag cacaagatgt caaacatgtt cactcactcg gaggattcaa      3900
     tctacgaaac tggctttcca actccaaaga tgttctcgca cgggtcgggg agggagatcc      3960
     agtcccaaac ctcatcacgg agaaatgctt acagctggac aagcatagct ccactgaacg      4020
     cgtacttggg atgttttgga agcctgagga agacgtgttc acgttttcca ccgctgtggc      4080
     cagcgaagca gatcacccaa caaaacgaca agcgctacga gtggtcatga gtccattcga      4140
     tccggccgga ctgttgagct tcttcctcat acacggcaag attctgatac aggatttgtg      4200
     gcgagcgaag accgattggg atcagccgat accagaaaaa ctactcggaa agtggaagcg      4260
     gtggataaat ttgttccgct acatggatca gatcagcatt ccgcgttgct acttccccca      4320
     acgttcgata caggacatcg gatcattgca gctgcacata tacgtcgacg caagcgagga      4380
     agcctacgcg tgcgttggat atttacgtgc tctgtttccc gacgggattc acgtagcgct      4440
     ggttggcgga aagtcaaagg tggcaccgct aaaggcacat tctattccac ggctggagtt      4500
     gatggccgcg gttatcggcg tgcgcttggc caagaccata ctaaacgggc actcgctaaa      4560
     ggtcgataaa gtattttatt ggagcgactc aaagacggta ctcgcttgga taaactcgga      4620
     ccaccgcaac taccggcagt ttgtcgcatg cagagtggga gagatcctgt caaagtcgag      4680
     agcggaacaa tggcgttgga tatctacaaa aaagaacgtt gcagatgagg cgaccaagtg      4740
     gggcaagggt ccctgtctgt ctaacaatag tcgatggttt cgtggagagg aagacttgta      4800
     tctgccggaa gaacagtgga taactaaagt gcttcctgcc aatcaaacga cggatgaaga      4860
     gctgagatcg tgtatggtac accgcgaagc attagcgcca caacttgtca aatgggatag      4920
     attctcaaag tggacgcgat tgcagcgatc agtagcgtac attcatcgtt atgtgcaaaa      4980
     tttgcgacgt actgcgaaca aaaagcaacg tatggaagga ttgcttacgc aagaagagct      5040
     aagtaatgct gaagccacaa tattccgctg gacgcaaagc gaaatgtact cggatgaagt      5100
     gacagctctt gttcgtgcaa ggaacgagcg tacaaatcaa caggtgcggc tggaaaagac      5160
     cagcttaatc cgtaagctgt cgccatttat ggatgaatcg ggagtaattc gttcagatag      5220
     tagaatagct gccgccacgt atgtttcgta tgacacgagg tttcccatca ttctccccaa      5280
     ggaacaccga gttacacatt tactggttga atggttccac cagaattatc tgcacgccaa      5340
     cggagaaaca gtcgtgaacg agaagaatca gcgcttccac atctcccagc tcagatcgtt      5400
     cgtccgcacg gtagctagaa agtgtactat gtgcaaaatg aagaagcctg ttccagcgat      5460
     tccccgaatg gccccactac ctgcggcccg gatacaagcc tacgtgcgtc cattttcttt      5520
     cgtcggtgtc gattactttg gaccaatcag catcagagta aatcgcacca tcgccaaacg      5580
     gtgggtcgga ttgttcactt gtatgaccac tcgagcagtc catctggagg ttgtccatac      5640
     gctatcagca gagtcctgta agatggctat caggcgcttt atcggacgcc gaggagcacc      5700
     agttgaaatc cgcagtgata ggggcacgaa tttcgttgga tcgagtaatg aattgaagca      5760
     ggaaatgggc aaaatcaatc accagctggc cgaaactttc acgaatgcaa atacaaagtg      5820
     ggtatttaac ccaccaggtg caccgcacat gggtggggcg tgggagcgtt tggtgcggtc      5880
     agtgaaaacc gcacttgccg cgatggatac ttcacgaaca ccgaatgagg agacattggc      5940
     aacaatactg atagaggctg agagtgtagt gaattccagg ccgcttacat atattcctct      6000
     ggagacagcg caacaagaag ctctcacgcc aaaccacttc ttacttctta gttcgaatgg      6060
     agtggcgcag acaccacgaa atttgacaga cccgaaacaa gcttgcagga acgactggaa      6120
     cctgtgcaga acgatggttg atcaattctg gcgtcgatgg gtacgagaat accttccgac      6180
     catcgcacgt cggacgaagt ggtttgagga ggttaagcca atcgaagtcg gggacttggt      6240
     cgttatagtt gaggagaaga tacgcaatgg atgggtgcga ggacgtgtag ccaagatctc      6300
     cgtaggacgc gatggacgag tacgagaagc tgtagtgcag actgcgaacg gcatggttca      6360
     tcgaccggtt tcgaagctag cgaagttgga tgtagcagtg agtaaagccg agcctgagat      6420
     accggaccag ccttacgggt cggggaac                                         6448
//
ID   BEL-168_AA-LTR repbase;    DNA;    INV; 642 BP.
XX
AC   AAGE02024719;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-168_AA_;
KW   BEL-168_AA-I; BEL-168_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-642
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024719; Positions   27305   26664.
XX
SQ   Sequence 642 BP; 209 A; 99 C; 136 G; 198 T; 0 other;
     tgttacggca tctcacaccg atcccgtacg gttacaccac gattgaatac ccctcgggag        60
     atggcgatag atgacagttc aggttgtcat tgagcgtgta atgagagatg tcaaagggaa       120
     gatgagggaa atgagataaa atcaaatagg aaggctcgga attgataaac atctttctct       180
     taaactgaat taaagctgat taaaggattt attttgctat attttgtaca acagtaagtt       240
     gaatatattt cttttctgaa ttgcttataa ttaatgttaa aaacctcatt taggtggtat       300
     ttgctgtaaa acaaccgttc tgaatttgta atttgagact agtgtgatag gttgaggtta       360
     gataaccgtg agtatgctga aatagagtta aacatacgag ttgtataatg atttaactat       420
     tatttatagc ccatttggct caatcgaaag atcttctgat cgttgggtca ctagaagata       480
     gattgttggg acattaggag cttagggaga gagaccgatg taagtaagaa tgctctactg       540
     ttcagtataa ttattaataa aaatttacag cttttagctc acgcgagtta cacaaaacca       600
     actgtgtttg ctcaaaggac cttgaaactc ccacgcccaa ca                          642
//
ID   BEL-169_AA-I repbase;    DNA;    INV; 6294 BP.
XX
AC   supercont1.326;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-169_AA_;
KW   BEL-169_AA-LTR; BEL-169_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6294
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.326; Positions  460053  466346.
XX
CC   Positions [5351-5908] - Integrase core
CC   'ACGCA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..6292
FT                 /product="BEL-169_AA-I_1p"
FT                 /translation="MVNTRARMQNLTSPNRQASTCAVCDRPDSADNMIQCL
FT                 KCSIWWHYSCAGVTDSIANRDWMCAKCLPAPAESTSNRSSASRKARLELSL
FT                 RRLEEEKEFMKKQMALDLEKQYADQKYQLLEESLAEEDDIGNRSVRDRIDD
FT                 IEKRSRSEQVSEWVQQQSLLAPDKVVNPQPLIESGLARGNPTRPLVLVSDE
FT                 IGAEGGNGFNPPSQLDAPSKQQGDTVLPILNSDEEVVRLLQEQLNIYRENP
FT                 SAHRMQQVRDQFERCFGRGLIDSVQQHQPTGAQRTMVNLQPDVSKGAIRKT
FT                 SGPVQSTKLQHAAPHVNQASCDPVVTPLHRSTRPSGVASLPNRTTTKPLPA
FT                 SSVGATARNPSARVNEGTEQDQPQPCFDGIHAVPHRTRDLFHPMDAADSPE
FT                 RAYFTGTAHGLVNNPTLSASRNNAFAGQYPAYQAGNIQLPSTSNTGQIDGA
FT                 LIAPPVFRPTPEQISARHVVPRDLPEFSGDPEDWPLFHSSFNNSTNACGYS
FT                 HAENLARLQRCLKGDALKAVRYYLLSPESVPDVLKTLQTLFGRPEIIVNKL
FT                 IRNVRDCPIPKAERLETLIDFGMTVRNLTQHLISAGQQAHLSNPVLLQELI
FT                 EKLPANIKLQWAQHLIYYPVPSLQTFSDFMSGVVESVAKVVPYGGGQSRSD
FT                 RPRAREKGFVHTHSETLSPNIVTIQRSSPSEKSCFVCSKLGHRVKECERFK
FT                 GSSIEDRWKIVRSSKLCRSCLSPHGRRACKNLSFCGINGCQYRHHPLLHSP
FT                 STTIDQPTKESHNYHHCGQSVLFRIVQVTLYGVSGSLDVFALLDEGSSTTL
FT                 IERSLTEELDVYGPTVPLCLTWTGDMSRSERDSKMVTFDVSEVEKQKRYPI
FT                 KNARTVSSLNLPAQTLRFKELQKQYVHLKGLPIRSYENAKPRLLIGLRDIS
FT                 LAVPRIIKDGNNGPIATKTLLGWTLYGCFSGASKPEYLNFHACECEGLNEL
FT                 VRTYINGECNDMQPARQMESEAEKRARYLLEQTTVRVGDRFQTGLLWKHDE
FT                 VKMPESYPMALRRLECLERRMNRDLVLKENVHRQVAEYQEKGYAHRATIEE
FT                 LRLADPRRIWYLPLGAVINPKKPEKVRLIWDAAAKVNGISLNSVLLPGPDL
FT                 LTPLPAVLFRFRQFPVAVSSDIREMFHRILVTEADRHSQRFLWRNCPDQKP
FT                 QIFLMDVITFGATSSPVSAQFVKNKNALEFVDRCPRAVEGILKSHYVDDYL
FT                 DSFETVGEAKSVSSEVRAIHLKGGFELHNWSSNNKEVLENLEVAATKAEKH
FT                 LTSNRDTNTERILGMLWNPEEDKLGFSTKFNDEIAMLIENGFRPTKRQILK
FT                 CVMSLFDPLGLLACHLVHGKVLMQDVWRTGISWDEPVSDEIMRHWERWIRL
FT                 FSNVQNLRLPRCYFQNASSALYNSLQVHVFVDASEVAYSAAVYFRIIGADG
FT                 IVQCSLVAAKTKVAPLKYVTIPRLELMAATLGTTLLSFVIDGHTIQIKKRF
FT                 LWSDSKTVLSWIHSDHRKYRPFVAARIGQILTTTNETEWRWVPSKLNVADE
FT                 ATKWGKGPCFEANCRWFVGPDFLYTPETEWPKPNQVKVATTEEIRPCFLHH
FT                 ESLPTPLIEFQRFSKWSRLLRAVAYMLRAVSIWRASGMEAKRGMRSVSKSL
FT                 VRLSHDNLVDAEMLIWKQVQMEAYPDEESLLSDNCSIPKDKRANQLKSSSL
FT                 YALSPVMDEKGIIRVDGRIGNAKQVPMTVKYPIILPRRHHATLLLVDHYHR
FT                 EFLHGNNETVCNEMRQRFYVPQLRVLIRKVSKQCQRCKTVKARPEIPRMGL
FT                 LPAARLSPFVRPFSFVGLDYFGPLLVKVGRSNAKRWVALFTCLTIRAVHVE
FT                 VAYDLSTASCISCINRFVSRRGAPLEIHSDNGRNFVGAANILKEQIKRIEF
FT                 EVATTFTTTNTKWVFIPPLAPHMGGSWERMVRAIKTALFSLPQDRKMDDEA
FT                 LQTMLVKAEAIINSRPLTYLPLDSDEQEAITPNHFLLGSSSGTKQPAVPIT
FT                 DNRNLYKSWELIEQQLDIFWKRWVREYLPTLTRRTKWFEEVKPIEPGSLVM
FT                 VVDDAKRNGWIRGRVLEVVAGQDGRIRQALVQTSAGVFRRPVSKLAVLDLK
FT                 DSGKVASDTHLYGRG"
XX
SQ   Sequence 6294 BP; 1784 A; 1473 C; 1547 G; 1490 T; 0 other;
     aaatcttcaa aaaatcatgg taaacacccg tgcaagaatg cagaacttaa cctcacccaa        60
     cagacaagct tccacttgtg cggtttgcga taggccagac agtgccgata acatgattca       120
     gtgcctaaaa tgcagtatct ggtggcacta ctcgtgtgca ggagtgaccg actcgatcgc       180
     gaaccgtgat tggatgtgcg cgaaatgcct gcccgctccc gcagagtcca cgtcaaacag       240
     atcgtcagcc agccgtaaag ctcgactaga gttgagtctt cgtcgtttgg aggaggaaaa       300
     agagttcatg aagaagcaaa tggctctgga tttagagaag caatacgccg atcaaaaata       360
     tcagttactg gaagaatcgt tggcggagga agatgacatc ggaaatcgca gtgtacgaga       420
     tcgaatagac gatattgaga aacggagccg ttcagaacaa gtttccgagt gggttcagca       480
     gcaatcacta cttgcaccgg ataaagtagt aaatccacaa cccctaatcg aatcaggttt       540
     ggcaagaggt aatccgacta gaccactagt gttggtgagc gacgagattg gcgcagaggg       600
     aggaaacgga ttcaatccac cgtcccagct ggacgcaccg tcgaaacagc agggtgatac       660
     agtattgcca atattgaaca gtgatgagga ggttgtgcgg ttgcttcaag aacaactaaa       720
     tatttatcgt gaaaatccgt cggcgcatcg aatgcaacag gttcgagacc agtttgagcg       780
     atgtttcggc cggggactga ttgactcagt tcaacaacat caacctactg gggcccagcg       840
     aacgatggtc aacttgcaac cagatgtatc gaaaggagcg atacgcaaga cgtcgggacc       900
     agtccaatct accaaacttc aacatgcagc tcctcatgtg aaccaagcat catgcgatcc       960
     agttgtaaca cctctgcata ggtctaccag gccatcagga gtggcgtcgt tacctaacag      1020
     aacaacaacc aagcctctac cagctagcag tgtaggagcc actgcaagga atccgagtgc      1080
     aagagtaaac gaaggtacgg agcaagatca gccacaacca tgcttcgatg gcatacacgc      1140
     agttcctcac aggacaagag atttattcca tccgatggac gcagctgact caccagaaag      1200
     agcctacttc actggtacgg cgcatggcct agtaaacaac ccaacgctat cggcttcacg      1260
     gaacaatgcc tttgctggtc agtatccggc ttatcaggca ggtaatattc agcttccctc      1320
     aacatctaat accggacaaa tagatggcgc tttgatagca ccaccagtat tccggcctac      1380
     tccggagcag atatccgcta ggcatgtagt gccacgagac cttccggaat tttcgggtga      1440
     cccggaagat tggccactat ttcatagcag tttcaacaat tccacgaatg catgcggata      1500
     cagccatgca gagaaccttg cgcgattaca acgttgcctg aagggtgacg ctctcaaagc      1560
     cgttcgatat tatctgcttt cgccagaatc tgttccggat gtattgaaga cgttacaaac      1620
     tctttttggt cgaccggaaa tcattgttaa taaattaatc cgtaatgttc gagactgtcc      1680
     gataccgaaa gcagagcggt tagaaaccct catcgatttt ggaatgacag tgcgcaattt      1740
     aactcaacat ttgatttctg ctggtcagca agcacacctg tcaaatcctg tacttctgca      1800
     ggagctcata gaaaagctac cagcgaacat caagctccag tgggcccaac acctgattta      1860
     ctatcctgtt ccatccctgc agacattcag cgattttatg tcaggagtag ttgaatcggt      1920
     tgccaaggta gtcccttacg gaggaggtca gagtaggtca gatcgcccaa gagctagaga      1980
     aaaaggattc gttcatactc attctgaaac gcttagcccc aatatcgtca ccatccagag      2040
     aagttcacca tccgagaagt cttgctttgt ttgcagtaaa ttgggccatc gcgtaaagga      2100
     gtgcgaaaga ttcaaaggga gtagtatcga agatcgatgg aagatcgtgc gatcatcgaa      2160
     attatgtaga agttgcttaa gtccccacgg tcgacgggcc tgtaaaaatt tgagcttctg      2220
     tggtatcaac ggttgtcagt accgccatca tccattgctt cactctcctt cgacaactat      2280
     cgatcaaccg acgaaagaaa gtcacaacta tcatcactgt gggcagtcgg tacttttccg      2340
     gatcgttcaa gttactttgt acggagtttc tggaagtttg gacgtatttg cattattgga      2400
     tgaaggatct tccaccacac taatcgagcg cagtcttaca gaagaactag atgtgtacgg      2460
     accaactgtc ccactatgct taacgtggac cggggacatg tcgcgctcag aacgtgactc      2520
     gaaaatggtt acgtttgatg tgtcagaggt tgaaaaacag aagcgttatc caattaaaaa      2580
     tgctcggacc gtgtcatctc tcaatctacc ggcccagacg cttcgcttca aagaactcca      2640
     gaagcagtac gtacacttga agggcttgcc gatacgaagc tatgaaaatg ccaagccaag      2700
     gttgctgatc ggtctccgag atatctcgtt ggcggttcca agaatcatca aggacggcaa      2760
     taatggtcca attgcaacaa aaacattatt aggttggaca ttgtatggat gcttttccgg      2820
     tgctagcaaa ccggagtacc taaatttcca cgcttgcgaa tgtgaaggct tgaacgagtt      2880
     ggtgcggaca tacattaacg gtgagtgcaa tgatatgcaa ccagcacgac agatggagtc      2940
     cgaagccgaa aagagagcac gttatctttt agagcaaacc acagttcgag tgggcgaccg      3000
     ctttcagaca ggcctgctct ggaagcacga cgaagtcaag atgccagaaa gttaccccat      3060
     ggctcttcga aggctagaat gcctggagcg aaggatgaac cgggatctgg tcctgaaaga      3120
     aaacgtgcat cgacaagtag ctgaatacca ggaaaagggg tacgctcacc gggcaactat      3180
     cgaagaactt cgcttggctg acccaaggcg tatctggtat cttccgttgg gggctgtcat      3240
     aaacccgaag aagccagaaa aggttagatt gatttgggac gctgcagcaa aggtaaatgg      3300
     aatctcgctg aattccgttc ttcttcccgg tcccgatctg cttacaccat tgcccgctgt      3360
     tttgttccgc tttcgccagt tccccgtggc agtgtcgagt gacatcaggg aaatgtttca      3420
     tcgaatacta gtcaccgaag ccgaccgcca ttctcaacgt tttttgtggc gaaattgtcc      3480
     agatcaaaaa ccacaaatct tcttgatgga cgttataaca ttcggggcaa ctagttcccc      3540
     tgtgtctgcg cagttcgtaa agaacaaaaa tgctttggaa tttgttgaca ggtgtcctcg      3600
     agctgttgaa ggtattctga aaagccatta tgttgacgac tacctcgaca gcttcgagac      3660
     ggtcggtgaa gctaaatcgg tcagcagtga agtcagagca atccatctga aaggtggttt      3720
     cgaactccat aattggtcat caaataacaa ggaggttctg gaaaatctcg aagtagcagc      3780
     tactaaggca gaaaaacacc tgacatcaaa cagagacacc aatacagagc gtattctagg      3840
     aatgctttgg aatcccgaag aagacaagct tggattttca acgaagttca acgacgagat      3900
     tgcgatgctg atcgaaaacg gtttcagacc aaccaagcga cagatattga aatgcgtgat      3960
     gagcttgttt gaccccctcg gtttactagc ctgccatctg gttcacggta aagtgctcat      4020
     gcaggacgtc tggcgtacag gcattagctg ggatgaaccc gtgagtgacg agattatgag      4080
     acattgggaa aggtggatta gactgttttc caacgtgcag aacttacgcc tccccaggtg      4140
     ttacttccag aacgctagtt ctgccctgta caattcacta caagtccatg tatttgtgga      4200
     cgccagcgaa gtcgcctatt ccgcagctgt gtactttcga atcatcggag cagatgggat      4260
     cgtacagtgt tctttagtag ccgctaaaac caaggtcgct ccattgaagt acgttacaat      4320
     tccacggttg gagctgatgg cggctacttt gggaacgact ctgttgtctt tcgtaattga      4380
     tggccatacg atccaaatca agaaacgatt cctgtggtcc gattctaaaa cggtattatc      4440
     ctggattcat tccgaccacc gtaaatatcg cccgtttgta gccgctagaa tcggacaaat      4500
     actaacaaca acgaacgaaa ccgagtggag atgggtccct agtaaattaa atgtagccga      4560
     tgaagccaca aaatggggga aaggcccatg ttttgaagct aattgtcgct ggtttgttgg      4620
     gccagatttc ctctacactc cagagaccga atggccaaag cctaaccaag tgaaggtagc      4680
     tacaacggag gaaattcgac catgttttct acatcacgaa tctctgccta ctccactgat      4740
     tgagttccaa aggttctcaa agtggagtcg ccttctaaga gcggtagcat atatgcttcg      4800
     agccgtttca atctggagag caagcggaat ggaggcaaaa cgtggcatgc gatccgtgtc      4860
     gaaatcgctt gttcgactat cgcacgacaa tcttgtggat gcggagatgc tgatttggaa      4920
     acaagtacag atggaagctt atccagatga agaatcgttg ctgtcggata actgttcgat      4980
     acccaaagac aaacgggcaa atcagttgaa gtctagctca ctgtatgcac tttctcctgt      5040
     tatggatgag aaagggatta ttcgggtaga tgggcgcata ggaaacgcca aacaagtgcc      5100
     aatgaccgtc aaatatccaa tcattctccc aaggcgtcat catgcaacac tccttcttgt      5160
     ggatcattac catcgggagt ttcttcatgg aaacaacgaa acagtgtgca acgaaatgcg      5220
     tcaacgattc tacgtgcccc agcttcgagt actgattcgc aaggtatcca agcagtgtca      5280
     gcggtgcaaa acagtgaaag cacgtcctga aattccaaga atgggactcc taccagcagc      5340
     gagactatct ccgttcgtgc ggccatttag cttcgtcggt ttggattatt ttggaccgct      5400
     tttggtgaag gttgggcgtt cgaatgcaaa aaggtgggta gccctcttca catgcctcac      5460
     catacgagca gtacacgtag aggtggccta cgacctatct acggcgtctt gcatttcatg      5520
     tatcaatcgc ttcgtaagtc gccgtggagc gccactggag attcattccg acaacggaag      5580
     aaattttgtt ggagctgcaa acattctgaa ggaacagata aagcggatag aattcgaagt      5640
     tgctactacc ttcactacga cgaacacaaa gtgggttttc atcccaccat tagctcccca      5700
     catgggtggc tcctgggagc gcatggttcg tgcgatcaaa actgctctct ttagtcttcc      5760
     tcaggatcgc aaaatggacg acgaggcctt gcagacgatg ttggttaaag ccgaggccat      5820
     aatcaactcc aggccgttaa cctacttacc acttgattcg gacgagcagg aagccataac      5880
     tccaaaccac tttctactag ggagttcaag tggtaccaaa cagccagcag tcccaatcac      5940
     ggataacagg aacctctaca agtcctggga gttgatcgaa caacaactgg acatcttctg      6000
     gaaaagatgg gtacgagagt accttccaac gttgactcga cgaacaaaat ggtttgaaga      6060
     agtcaaacca atcgaaccag gaagtttggt gatggtcgtc gacgatgcca agagaaatgg      6120
     gtggatacga ggacgtgtat tggaggtagt tgcaggacag gatggtcgca ttcgacaagc      6180
     tctagtacaa acgtccgctg gagtattccg tcgtcccgtt tcaaaattgg ctgtgctgga      6240
     cttgaaggat tccggtaaag ttgcgtcaga tacccatctt tacgggaggg ggaa            6294
//
ID   BEL-169_AA-LTR repbase;    DNA;    INV; 482 BP.
XX
AC   supercont1.326;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-169_AA_;
KW   BEL-169_AA-I; BEL-169_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-482
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.326; Positions  459571  460052.
XX
SQ   Sequence 482 BP; 178 A; 74 C; 84 G; 146 T; 0 other;
     tgttgcgaca gaatcggtaa cactgccaag cacgacctat acatagaccg aggaatcacc        60
     tatcatggaa tgaagagaaa tgtcatcgca aaaactgaaa gtcatttcta aaagcaaatt       120
     gtgcattcta ttaactaagt tgaattcgat tataaaacca aaaattatta acctaaagta       180
     ttctattttg aattggtatc tattaaacga gtgtgtggag taatttgttt gaactaaagg       240
     ttagtaatgt gaattaaatg agctagaagt taaattatat cactataata actttagcag       300
     gaaaatcact cgtccacggt agccgtttag tatcaacgaa gattatcaag caaactgatt       360
     tgtaagttga aatacgttgt tacatgatag aaactaaatt tattactctt gtagtttgaa       420
     gcatatcaac gacgctaaat aaacgctttc aataacagta ctggctttgt tctacgggaa       480
     ca                                                                      482
//
ID   BEL-16B_DTa-LTR repbase;    DNA;    INV; 447 BP.
XX
AC   .
XX
DT   21-AUG-2021 (Rel. 26.10, Created)
DT   21-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16B_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-447
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (21-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 95% identical to the other LTR.
XX
SQ   Sequence 447 BP; 129 A; 95 C; 59 G; 164 T; 0 other;
     tgttgtgaaa tagatcggta ttttattatt gttaaatgct catcattgta ttgtttccta        60
     atcgcaccta gttaaatgct catcattgta ttgtttccta atcgcaccta gttatatgct       120
     catcattgta ttgtttccta atcgcaccta gttaaatgca catcattgtt tttgcattct       180
     acataaaagc tttaagctca cacgcatagc cgaaaattca gtctttttgc attagtattg       240
     gaatatcacg cgttcttttg cattatcatt tctgcacgtt ttttttcggc agtcatatac       300
     atacttgaag tcatatagtt tgaattgtgc caccgcaacc gctcgctaat cgcaacccgc       360
     ttaaaaccta ttgtaaaccc gccttttatt agtaaagaaa ctcaaaacct ataaaaacat       420
     taatacagtc cacttcattt ataacca                                           447
//
ID   BEL-16C_DTa-I repbase;    DNA;    INV; 5284 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16C_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5284
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (21-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 97% identity to
CC   each other.
XX
SQ   Sequence 5284 BP; 1440 A; 1270 C; 1154 G; 1420 T; 0 other;
     taacaatttt ggtccttcga gccggataac tgcgtgtgaa tttgagttta tttgtgaaca        60
     tgaacctcat cgacattcaa caacgtggtg ccgcaagggg caaatactcg ccccttaaca       120
     gtgcctcgga gttctcgcag ggatgtgata gtgtggaaac attgcaatag ctggatcgtc       180
     gtagccacct tcaaccactt tatggactct ccgaggatta gtggcattta acgggaggag       240
     ggatatgaag accctggatt ggatatagcc gaatacgagg acaagttcta cagagcgcac       300
     tccattttta gtaaagccat aaaggagatg ggcggtcaag atcatggaca ggaccagtcg       360
     aaccttttgc tatcaagtac agtggaacgt ctatttgagg gacaaaacca acttctggaa       420
     caaattcata cctcatctgg agcagctaat ttaaggtttg agaaaattcg aattcccaca       480
     ttttctggca aatacgagga ttggagccag tttagtgatt tgttcttaag ctcagtagat       540
     aataacgaaa agctctccaa gtgccaaaaa tttcattatc taaaatctta tttagatgga       600
     gaagcccttt ccttaattaa acatattgcc gtttcgaatg ataattatca agacgcgtgg       660
     gaaaaattgc aaaatcgtta taacaagaaa acgctaatcg ctcgatcatt tgttcagaat       720
     tttctttcgt tgccaaccgc taacaattcg aatatcgccg agttacgtag ggtaattgac       780
     tctgccgacg aatgcattcg aggcctacac gcgctgaact gtgacagccg cgatgtgtgg       840
     ctaattcata tattgctatc aaaattaggc cctgaaatca aacaagcttg ggctaacagt       900
     agtgtgtcgt ccaagaaaga cgtcaccata aatgatttat tcacttttct tttcgctcat       960
     tgtgatactt tggagtcttg tcaggatcta cacgtgatgc aaccctcaag accagcccag      1020
     agtagacgcc gccaagtcgc ttatcatgca agtggatcaa atcagtcttc tcgcggctgt      1080
     atctattgtc aaggacagca caatatatac gcatgtactg cattcaaagt cctggatgtc      1140
     gtacaacgcc gtactttcgc cagggatact aagctttgtt ctaattgcct aagtcgatct      1200
     catcaagtca aggattgtaa ttcttcgaac acttgccgtc agtgcaacgc taagcatcac      1260
     acgctagtcc acccggaaga ctctagatcg attccgatgg cctccgccca tatgtctgcg      1320
     gctgaggtta atatagttcc ttcaattgat catgatgctg atgtaaatac tgctgctgtc      1380
     agccatcata ctgtggacag ggccaacaat caagccctac tgccaactat tctggccaat      1440
     gtaattgaca catgtggcaa caagacctca tgtaggttat tgctcgatac tggatcaaca      1500
     ataaccatgg tagcagagtc gtttatccaa aggatcggaa ttccacgcac gcatgctcgc      1560
     atctcagttg ttggactagg tgctaacccg gctggagtta gccgaggtcg cgctaacttc      1620
     accttgctgt caaaaaccac aactgcatcc ttggaggtct ccggcctgat tatgagttct      1680
     ctgacctcct ttattcccgc tcagcaggtc aagtccagca ctcctatctg gaacaagatt      1740
     cgcagcttac cgttagctga cccgacgttt ggatcaccgg gaaaaatcga tgttattttg      1800
     ggcgctgatc aactctggaa catatatact ggacatcgcc gagagtttgg tattgactac      1860
     cccattgcac tacatactaa ttttggttgg gttattacag gcagctataa tgattgtacc      1920
     aatcatctac gcacgctcaa gaccaccacg cttacgaaga tttggattca ttagttcgct      1980
     ccttcatgga catggagcag gtgcatccga ccaaagcgac tatcgacgcc agtgatcctg      2040
     cagaaaaaca ttttctgaca acgcatgctc gccgagaaga tggtgtgtac attgtccagt      2100
     acccattcaa ggaacccatc atgccacttg gctctacgtt gccacaagct ctcaaccgct      2160
     ttgccgccct agaacggaaa tttcgaaagt tccccgcact caagcaagag tatgtaacgt      2220
     tcatggagga ctacttaaaa agaggacaca tggaactgat acctgctgct gaagcgtctg      2280
     aggatacagg acgctgtaac tatttggcac accacgcagt gtttaagccg gatagcacca      2340
     ccacccgttg ccgagttgta tttgacggct caggaaagga ctctaagggt cattcgctta      2400
     actcacgact gcacataggc ccacctattc aaagggattt aattggagta tgccttcgtt      2460
     ttcgtcagca tctttatgta ttttgcgctg acattgagaa gatgtttaga ggcattttgg      2520
     tatcagacga acatacgcag tatcaacaca tagtttggag aaaggaggag aacgctacgc      2580
     tggatcacta tcgactgctg accgtaacat atggcttagc ttcatcgcca ttcctcgccg      2640
     ttcgatttct taagcagctc gcaaacgata atgccgaaga gtatccgaga gctgctgtcg      2700
     ttctaaacag agacgcctac gttgatgata ttcccactgg atgcgaccaa attcaggatc      2760
     ttattgccct caaagatgag ttaatttctc ttctaagcaa agctcaattc aaccttcgaa      2820
     agtggagctc aaactgttgc gccctattga agtcgttgcc caaggaaatt tgtgagtatc      2880
     cgcttgaagc tttagagaag gacagttcat ttcgatttgt taaagtactg ggattgtatt      2940
     gggaaccaaa agctgactgc attttcttca agctagaaat ccccggaatt agccaagatc      3000
     tacgatccgc tgggtttgct tgcacccaca actgtgtttt taaagattct ctttcaagat      3060
     agctggctga gttctgtcga ttggaatgag gaactacctc cccaattatg tacacggtgg      3120
     caacagttcg tatctcaaat gcatttattg gaaacttgtc gaattcctcg ctacatatca      3180
     acaccgcttc aaacaatgga actgcacgga ttcgcagatg catcgtccca ggcatatgca      3240
     gccgtcatct atagtcgcgt caaagtcaac aatggatatg ctgttaattt gataatggta      3300
     aagacccgcg tggcacctat taagtctgtc tcaattccac gactcgagct aaacgcagcc      3360
     catttgctct ttaagttaat ttccctggtc aagcaatcat taactgttcc tatttccaga      3420
     atcaattgtt ggtcagactc tgaaatagtt ttgcattggc tatcatctcc tccccgtacc      3480
     tggaacactt atgtttgcaa ccgtaagtgc agaaatctta gagacgtgcc cacatagctg      3540
     ctggcaacat attcgaagtg gcgataaccc tgcagactgt gcatcccgag gaatacttcc      3600
     aaaggacctc ttggaccatc caatctggtg gaatggacct gcctggctat ctcagtcttg      3660
     gccgacttgg ccacctgtta aggctaagtt tgttctgtcg acagaagaag aggaatacct      3720
     ggaggtaaaa gccgatccta aggttaacct acacatttcc gacgacggaa attcactaac      3780
     ctgcctgatc aataaaacct cttcatggtc tcgtttgata aggatactca gctactgctt      3840
     tcgttttgtt catcgtcttc gcgggagaaa tcaactttcg ccgtttctgt cggcgtggga      3900
     gctacaatat gcccggtctc ggatattcac ccatgttcaa aaggagttct ttaaagtgga      3960
     atggaatgga cgagcaatta agcaccggac agccattgaa aaagaactcg aagttgatcc      4020
     gctacacccc tttcttagac gagcagagtt tactacgtgt tggtggtcgc atcgataatt      4080
     ctatggctaa ttatgacgca aaacatccca taattttgcc taaggaatct ccaatagctg      4140
     ctttattagt tcgatatcaa catgctgcat cgctacatgc tggagtcgaa tacacttttc      4200
     atagtctacg actaaggtat tggattctag gagctcgaaa cctcgtccgc aaaaccgtat      4260
     ttaattgcag aacttgcttc ttgcaacgaa gacacacgag ttctcaactt atggctgatc      4320
     ttcccgagtt tcgagttcaa cccgcccgct gttttcttca cagtggattg gattatgctg      4380
     gacctgtgac gatcaaagcc tctacaggtc ggacaccaaa atttggcaaa gcttggtttg      4440
     ccatcttcgt ttgtctatca acaaaggcta tacaccttga actcgtcagc gatttgacaa      4500
     catccgcctt tatagccgct ttcaaacgct tttggtctcg acgagggccc atatcagact      4560
     tatattcgga taacggcaca acttttcatg gagccaaaag agatttagct gaaatgcaac      4620
     gcatcgcaat cgcccaggct catagcgaag agatttcgag cttcctgtcg agtcacgaaa      4680
     tcaattggca tttcatcccg ccctcagcgc cccatttcgg aggtatttgg gagactggcg      4740
     tgcgatctat aaagctgcat ctaaaacgag ttattggcag cagtgcatta acattcgagg      4800
     aatattcgac cctgttaatt cagattgaag gacttctgaa ttctcggcct ttgtgcgcac      4860
     ccagcgatca cagccttaac ccgctaaccc cttctcattt tctaacaggt cagcctctca      4920
     cttcggtacc agagccatcg ttcctggatg taaacatcaa cagactgcag cgctggagac      4980
     aattgtaggc caaggttcaa gggttctgga aacgctggaa cttagagtac ctcagtacgc      5040
     ttcaaactcg catgaaatgg caacaagatg ctcagaacgt tgccatggac accctggtag      5100
     tgctgaagga gccgaatcaa ccgccaagca agtggctgtt gggacgagtc gtacaacttc      5160
     atcctggaca ggatcagagg gtccgtgtgg tctcagttaa aactgccaaa gcaacctaca      5220
     agcgccccat tacgaaaatt gctgtgcttc ctttgaactg aaccgtcgtt caggggggcc      5280
     ggta                                                                   5284
//
ID   BEL-16C_DTa-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   21-AUG-2021 (Rel. 26.10, Created)
DT   21-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16C_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-331
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (21-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 97% identical to the other LTR.
XX
SQ   Sequence 331 BP; 106 A; 67 C; 44 G; 114 T; 0 other;
     tgttgagaaa tagatcgttc atttattatt gttttctaat cgcacctagt taaatgcaca        60
     tcattgtatt gcattctaca taaaagctta aagcttacac gcatagccga aattgcagtc       120
     gatctgcatt agtattggaa tatcatgcgt ttttttgcat tatctttctg cacgtttttt       180
     cggcagtcat atagaagtca tatagttgaa ttgtacccgc aaccactcgc tattcggaaa       240
     cccgcttaaa acctattgta aaaccgctta ttattaataa aaacctcaaa acctatataa       300
     acattaatac agtccacttc atttataacc a                                      331
//
ID   BEL-16_AA-I repbase;    DNA;    INV; 5636 BP.
XX
AC   AAGE02020450;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_AA_;
KW   BEL-16_AA-LTR; BEL-16_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020450; Positions   64085   58450.
XX
CC   Positions [4638-5219] - Integrase core
CC   'GCTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           294..5600
FT                 /product="BEL-16_AA-I_1p"
FT                 /translation="MTLPRTPEAAKKVKMEEIKVLVHQRGQVKGSVTAIVK
FT                 ALEKAEDDPSQVSLPILRVYSKKLESFYNTYVSLHKEILACSPSGKLDEQD
FT                 VKLSEFEDLHTDALIRVEILIEALTKPLSATVPTLSQQNSPQVIVQQQPLR
FT                 APIPTFDGRYENWPRFKMMFQDIVDKCSDSDAIKLHHLDKALVGSAAGIID
FT                 AKTLADNNYHHAWEILTERFENKRVIIDTHIGGLLSLKRMNKESYCELREL
FT                 LDTCTRHVEGLKYMGQEIDDTSGLIITKILTSCLDSVTRKYWERSLTHGEL
FT                 PDLDETLKFLKDQCRVLERCETDQSAVAKSTVGKSSQPASKSVNVKVHAST
FT                 SGETNESCQFCCGNHFNYQCSDFRKLAVPDRIAKVKESRVCFNCLRRGHRS
FT                 LNCQSKSNCSKCHKRHHSLLHEEKQKLDSSEHADSKSQEQNVPIQAAASPP
FT                 PQPAVPVSSVSTNVSSASCSAFLPNVLLLTAVVNLMDKNGRAVRCRAFLDC
FT                 GAQTNLLSAAMFQKLGIDSTPVNADIVGVSGARSKSTRLVEVNVRSVNTEY
FT                 SSFLKCLVTSKITNALPCKAVNVSEWKIPSGFPLADPKFGTPAEIDLLIGV
FT                 TEFFRLLKPGHLVIGEGLPELRETELGWVVAGEIQDESSAIINPQQVSSVT
FT                 IETLNDAIKRFWEIEEVNTQSTSTTEEQECEELFRKSYQRDSAGRFVVKLP
FT                 FRSNLHLLEDNRSLALRRFLFLERRLRKQPNLHVQYSSFIDEYEHLGHCKE
FT                 IRESEDRPNMIKYYMPHHAVLRPDSSSTKLRVVFDASAKSSPSAMSLNDVL
FT                 QVGATVQSDLFSILLRFRMHRFVFTADITKMYRQVRVHPDQTSVQRIFWRT
FT                 NPAERLRILELQTVTYGTAAAPFLATRSLVQLCEDEGSDFPLAARIILEDC
FT                 YVDDIISGADTIEEAVDCCRQLQVLLGKGGFPVHKWCANNELTLGDIPKSK
FT                 REKLLQLDQLSANEVIKTLGLIWDPSSDEFLYAVDQSPAEPTLVTKRQVFS
FT                 KCAKLFDPVGFLSPIVVLAKQLMQRTWSAKIDWDSPLEGDLLADWQRFSEC
FT                 LAGVNEIKVPRPVLCFPYIALELHGFADASGLAYGACIYIRCVNAENECNV
FT                 RLLCSKSKIAPLQDVTIARKELCAALLLSRLVRKVLPILRVAVSAVHLWSD
FT                 SQIVLAWLRKPPNMLQPFVRNRVVEIVNENQHTQWSYVRSKENPADVVSRG
FT                 QSPNLLKNNVMWWNGPPFLHLPNYEPAVIEEINDSELPEIKPSALVVVDAL
FT                 NVDDLSLFKRFSSFRKLQRVLAYVQRFIRNCREKVVENRIKEFSPTISELR
FT                 TALHTIVILIQHEALFEEVQRVEHGEPCKVVGMLGPFLQDGALRVGGRLQN
FT                 SRLPVQMKHQYILPKHYITDLIIRAYHEENMHVGPSGLLSTLRQRFWLLGS
FT                 RSAVRKITRHCVRCFRSKPKGVKQYMGNLPPARVTCAAPFEVTGVDYAGPF
FT                 LVKQGTRKPIVIKAYISVFVCLVTKAIHLELVSDMSAVAFVAALQRFVSRR
FT                 GVPREIHSDNGSNFRGAKADLHNLFLLFNDQVAVKDIGSFCQSKEIEWNFI
FT                 PPEAPEFGGLWEAAVKSTKHHLKRILGETPLTFEEFGTLLAQVEAILNSRP
FT                 LFSLSDDPSDGEVITPSHFLIGRPMNAIPEPSYESVGVNRLSRLQHLQLMR
FT                 EHFWKSWVRDYLVSLQPRGKNYFRVQNVVPGQVVLLEDKNLPPQQWKMARI
FT                 VTVYPGSDNLVRAVDVRVGESVFRRPINKLSLLPIEDNRSSDQDFATRE"
XX
SQ   Sequence 5636 BP; 1494 A; 1219 C; 1340 G; 1583 T; 0 other;
     tagtggtccg tccgaaccgg atgaagaaaa ccgaacaaga actacagtcc aagtgaacta        60
     agtgaaaatc gcagtgcagc accaaaaact gtggactagt gaactgtact tttgctgcaa       120
     ctgtgattct gaaaatgata aagtggaaaa tgtaaaagaa cagaaaaaca gtgagcagaa       180
     attattgaag tgagtgaatt tcgaaaagaa aactggtggc gtccatccat tcgagcagtg       240
     tcatcatcgt gagtttgtgt tgattgctct tccgtagcag cgtttcctgt ccgatgacac       300
     taccacgtac accagaagca gccaagaaag tgaaaatgga ggagattaag gtgctcgtcc       360
     atcagcgcgg ccaagtgaaa ggcagtgtaa ccgccatcgt gaaagcgctg gaaaaggcgg       420
     aagatgatcc gagccaggtg agtcttccga ttctgcgagt gtattctaaa aagctcgaaa       480
     gcttttacaa cacgtatgtt agtttgcaca aggaaatttt agcttgcagt ccatccggaa       540
     agcttgatga gcaggatgtg aaactttccg aatttgaaga tctccacacc gacgctttga       600
     ttcgtgttga gattctgatt gaagcattaa caaaacctct ttccgctact gtaccaactc       660
     tgtcgcaaca aaactctcct caggttattg ttcagcagca gccgcttcga gctcccattc       720
     caacctttga tgggcgctac gaaaattggc cgcgcttcaa aatgatgttc caagacatcg       780
     ttgacaagtg ttccgattcc gatgcaatca aattgcatca ccttgataaa gcgctagttg       840
     gttcagcagc aggtattatt gacgcgaaga ctctagcgga caataattac caccatgctt       900
     gggaaatcct tactgagcgg tttgagaata aacgggtaat cattgatacg catattgggg       960
     gccttttgtc gctgaaacgt atgaacaagg agtcttattg tgagttacgt gagttgttgg      1020
     atacgtgcac gcgacacgtc gagggtctaa agtacatggg tcaagaaatc gatgatacat      1080
     ctgggttgat tattacaaaa attcttactt cttgtctgga ttcagttact cggaagtatt      1140
     gggaacgatc tctcactcac ggagagttgc ccgacttgga tgaaactttg aaatttctca      1200
     aggatcagtg tcgcgttctg gagcgatgtg aaactgatca atcagccgtc gcgaagtcta      1260
     ctgtcggtaa atcctctcag cctgcgtcga aatctgttaa tgttaaagta catgcgtcta      1320
     cttctggaga aaccaatgaa tcgtgtcagt tctgctgtgg taatcatttt aattaccaat      1380
     gttccgattt tcgcaaattg gcggtgccag accgaattgc aaaggtgaag gaatctcgag      1440
     tgtgtttcaa ttgccttcgc cgtgggcatc ggtcgttaaa ctgtcagtct aagagtaatt      1500
     gctccaagtg tcacaaacgt catcattcgc tgctccacga agaaaagcaa aaactcgatt      1560
     cttctgagca cgcggattct aagtcgcaag aacagaatgt tccaatccaa gccgcggcat      1620
     ctcctccgcc acaaccggca gtcccagtga gttctgtgtc aacgaatgtt tcttcagctt      1680
     cttgttcagc ctttcttccg aatgtgttgc ttctgactgc cgttgtgaac ctcatggata      1740
     aaaatggcag agccgttcgt tgtcgcgcat ttttggattg cggcgcacag acaaacctct      1800
     tgtctgccgc gatgttccag aaattgggaa tcgatagtac gcctgtcaat gctgatattg      1860
     tcggcgtaag tggcgcgcgt agtaagtcca ctcgattggt agaggttaat gtccgttcag      1920
     tgaataccga atacagttcg tttttgaagt gtctggtcac gtcaaaaatt acgaatgctc      1980
     taccgtgcaa agccgtgaat gtttctgaat ggaaaattcc ttcaggattt ccgttggctg      2040
     atccaaagtt tgggactcca gccgaaatag acctgttgat aggtgttact gagttcttcc      2100
     gtcttctgaa accaggtcat ttggtaattg gtgagggtct gcccgaattg cgtgaaactg      2160
     agttgggctg ggtcgtcgct ggagagatcc aagacgaatc ttcagcaatc ataaacccgc      2220
     aacaagtgag ttccgtaaca atagagacac tcaacgatgc tattaaacgg ttttgggaaa      2280
     ttgaagaggt gaacacccaa tccacttcta ctacggaaga acaagaatgt gaggaactct      2340
     tccgtaagtc ttatcagagg gattccgctg gtagatttgt agtgaagctt ccatttcgaa      2400
     gcaacttaca cctgctcgaa gataataggt cgttggctct tcgtcgtttc cttttccttg      2460
     aaagacgcct acgtaaacag ccgaacctgc atgttcaata ctcatccttc attgatgaat      2520
     atgagcactt gggacattgc aaagaaattc gtgagtccga agatcgtcct aacatgataa      2580
     aatattacat gccgcatcat gccgtgctcc gtccggacag ttcgagcacc aaattaaggg      2640
     ttgtcttcga tgcatcagca aagtcaagcc cttcagcaat gtcactcaac gatgtgcttc      2700
     aagttggtgc gactgttcag agcgatttat tcagtatctt gcttagattt cgaatgcatc      2760
     gttttgtctt cactgctgac atcacaaaga tgtacagaca ggttcgtgtc catccggatc      2820
     agacttcagt ccagcgtatt ttttggcgta ccaatcctgc agagaggctt agaattctcg      2880
     agctgcaaac agttacatat ggtacggctg cagctccctt tctggccact cgttcattag      2940
     tccagttgtg tgaggacgaa gggtctgatt ttccactagc agctcgcatc atccttgagg      3000
     attgttatgt agacgacatt atttccggtg ctgacacaat cgaagaagct gttgattgct      3060
     gtcgacagct tcaagttctt ctcggaaagg gtggttttcc cgtacacaag tggtgtgcta      3120
     ataatgagtt gaccttaggt gatattccca agtctaagcg agaaaaattg ttgcaactcg      3180
     accagctatc tgccaatgag gtcataaaaa ctctcggttt aatatgggat ccatcaagcg      3240
     atgaatttct ctacgcagtt gatcagtccc ctgctgaacc tacattggtg accaaaagac      3300
     aggtattttc aaaatgtgca aagctgttcg atcctgtagg ttttctgtct cctatcgttg      3360
     ttttggcaaa acaattgatg cagcgtacat ggtcggctaa aattgattgg gactctccac      3420
     tcgaaggaga tttactggct gactggcaac gttttagtga atgtttggca ggtgtgaatg      3480
     aaataaaagt cccaaggccg gtcttgtgtt tcccatacat cgccttagag ctacacggct      3540
     tcgcggatgc ctctgggcta gcttacgggg catgtattta cattcgctgt gtaaatgctg      3600
     agaatgaatg caatgtgcga ttgctatgca gcaaaagtaa aattgctcct ctacaagatg      3660
     tgacgattgc acggaaggaa ctttgcgctg cactattact ttcacgcttg gttcgcaagg      3720
     tattacctat tctccgtgtt gctgtttcag ctgttcactt atggtcagat agtcaaatag      3780
     tgctggcgtg gttgcgtaag ccacccaaca tgcttcagcc atttgtgcga aatcgagtcg      3840
     ttgagattgt caacgaaaac cagcataccc agtggagcta tgttcgctct aaagaaaacc      3900
     cagctgatgt ggtttcccgt ggtcaatctc caaatcttct aaaaaacaac gtgatgtggt      3960
     ggaatggtcc accgttcctt cacttaccga actacgaacc agccgttatc gaagaaatta      4020
     atgactccga attgccagaa attaaacctt ctgcattagt tgtggttgat gctcttaatg      4080
     ttgatgatct ttcgcttttc aagcgcttca gttcgtttag aaagctccag cgtgttctgg      4140
     cttatgtcca acggttcatt aggaattgtc gcgagaaggt cgttgaaaac cgtatcaagg      4200
     aattttcacc tacaatatct gagctcagaa ccgcactaca tacgattgtg attctgattc      4260
     aacacgaggc tttgttcgaa gaagttcaac gtgtggagca tggtgaacca tgcaaggtag      4320
     ttggtatgct tggtccgttt ctccaagatg gtgcactgag agtaggaggc aggcttcaaa      4380
     actctcgatt gccggtgcag atgaaacacc agtacattct tccaaaacat tacattactg      4440
     atctcattat tcgtgcatat catgaggaaa atatgcacgt agggccatca ggtctgttgt      4500
     ccaccttacg tcaacgtttt tggctattgg gatccagatc tgctgttcgt aaaatcacaa      4560
     gacattgcgt ccgctgtttc cgctcgaagc ccaagggtgt taaacaatac atgggcaatt      4620
     tgccaccagc ccgagtaact tgtgcagctc cttttgaggt caccggtgta gattatgctg      4680
     gtcctttttt ggtgaaacaa ggtacaagaa aacctattgt tataaaggca tacatatctg      4740
     tttttgtatg tttagtaact aaagcaatac atctcgaact tgtttcggac atgtctgcag      4800
     ttgctttcgt agctgcttta caaaggttcg tcagtcgaag gggggttcct cgtgaaatac      4860
     attccgacaa tggatcgaat tttcggggtg ccaaggcaga cttgcataat ttgtttttgc      4920
     tgtttaatga tcaagtcgct gttaaggata ttggttcctt ttgtcaatcg aaggagattg      4980
     aatggaactt tattccgcct gaggctccag agtttggggg cctctgggag gcggcagtaa      5040
     agagtacgaa acaccacctg aaacgtattt tgggggaaac tccattaact ttcgaagagt      5100
     tcggtacgtt gttggcgcaa gtggaggcca ttcttaattc acgtccactg ttctccctct      5160
     ccgatgaccc ttcagatggt gaagtgataa caccatccca cttcctgatt gggcggccga      5220
     tgaatgccat tccagaacct tcttatgaat cggttggggt gaatcgttta agccgtttgc      5280
     agcatttgca actaatgagg gaacactttt ggaaatcgtg ggtgcgggat tatttggtca      5340
     gcctacaacc gagaggcaaa aactatttcc gggttcaaaa tgttgttccg gggcaagttg      5400
     ttctactgga agacaagaat ctacctccgc aacaatggaa gatggccaga attgtcacag      5460
     tgtaccctgg aagtgacaat cttgtgagag cagtagatgt tcgcgtgggt gaatcagtgt      5520
     ttcgacggcc tattaacaaa ctttctctac tacctataga agacaatcgg tcatccgacc      5580
     aggactttgc taccagagag tagtagtagc actctgctcc gtgcgcggcg ggagta          5636
//
ID   BEL-16_AA-LTR repbase;    DNA;    INV; 832 BP.
XX
AC   AAGE02020450;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_AA_;
KW   BEL-16_AA-I; BEL-16_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-832
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020450; Positions   58449   57618.
XX
SQ   Sequence 832 BP; 204 A; 194 C; 182 G; 252 T; 0 other;
     tgttcgcgac agcgaaatgg ttacaatcct tttcccaacg tccctaaatt caaccctgta        60
     cgcataccct gtacagcgca cgaccaacat cccttttatt tcccttcctc attccttcct       120
     ttcaacgcaa aatcaacacg cacacaccaa cacctgaata agccacaagc gtacagtcat       180
     cgaaggcata atgcgtgtgt acaacgtcaa cagaacgcaa tttgtgattg gaggaccaat       240
     cgcgtggatt tttgttttgt atattttttt tttgctcctg agagtataaa agtaaatgta       300
     tcgccacgaa gcggttgaga agttatttgt aatctataca gtgaagacat ccgaataaaa       360
     cataaagtga aatgtagtga gtctatcatt tgtgaagctg agccctgagg atcgcagcaa       420
     ccgctgctca tcttgttacc tgaccatcgt tgccgtttcg atttcgtcgt gttcccgttc       480
     ctgttgagag tcagctgccg attgcattca tcaaattgcc accactcaga aacgtttctg       540
     ctctgccgct gctgtgtgta ttattttgac taccgctgct atccaatgcc gtcatttgtc       600
     gctaccttcc aaccagctag agttgttaag aaattccgcc atagttcttt tcagaattgg       660
     ccaccaggtt ggtaagcgat ttgagagcta ggataggcat tgcgttgtag tcgtaatttt       720
     ccaagcagag aatagtctga gttgtccggt ggttttggac ttgaatttgg attgcgatcg       780
     gtcgctggct gctctggtgg tttgtgagtt tggcgttggc gtgaagccaa ca               832
//
ID   BEL-16_AnFu-I repbase;    DNA;    INV; 6232 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6232
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 668-668 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           940..6195
FT                 /product="BEL-16_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MGPETRSQKRAEVDKMATKQQELEKAIRLRSHVKSKL
FT                 LRLQNTLLQAKDITHPQLQVFEQNATSIYDDYCKFHTSIIGLITDDAMEEH
FT                 EKEYTDFEELNNTALTKICELKLSMETKEEKITSPPQVIFQQKPLKIPIPT
FT                 FDGTYTAWPKFKAIFQDLMANSGDSEAVKLYHLDKALTGEAAGILDAKVMN
FT                 EGNYEHAWQILTERYENKRIIIDTHIRGLFSLKKMTSETHHELRTLVQEAS
FT                 RHVESLKYLGQELLGISDLMIVHLLVAALDKSTRKAWEGTQNKRELPNYHQ
FT                 TIEFLKSRCRILENCETAFPVTTNSKLKPQQTSQVKNIPQKSHAASSIIPQ
FT                 SCEFCGGSHRNHQCTELNTLTSTQKMERIRAAGVCFNCLQKGHRVRECPST
FT                 MNCRKCQRRHHTIIHEEGALQRTTSFNLTQPAETADRLPFVPATSTQKTNR
FT                 VTNPVSSTCSSNLVQSCKTVLLQTALVQVFDYKNQPHLCRVLLDSGSQVNF
FT                 VSEELSNRLGVRTTPANVPISGINALRTLAREKVQLRIQSRVSAFEADLEF
FT                 LITPRVTGIIPSSTINVSHWEIPHGIILADPNFNQPDKIDLLIGAELFFDI
FT                 FKPGRLNVMDNIPQLRDTHFGWIVSGVITEPLSNLSLQQTNHASIEAVEEM
FT                 MQQFWKIEEVPDVPKLAKEEMACEEHFLSTYNRDETGRFVVRLPFKDTLQQ
FT                 LNSCRALAQKRFLMLERRLARHPDLQNQYKEFIHEYEELGHCHEIHEAQDP
FT                 PQQRAYYLPHHAVLRPSSSSTKCRVVFDASAKAAPSEFSLNDVLQVGPVVQ
FT                 NDLHFIVLRFRRNKIAFSGDVSKMYRQIRHAEEDQRFLRIFWRDHPSQPLR
FT                 VLELSTVTYGTAAAPFLATRCLVQLVAEDGNAFPVASRIVLEETYMDDVLS
FT                 GADSVDEAIEAQRELKQLLAQGGFPIRKWCSNSQRFLEQIPEEDREKKVKL
FT                 EEKGVNETIKVLGVCWDPNADIFFISYHPELSSTEQQLTKRIMYSEIARLF
FT                 DPLGLVSPVVVLAKLLTQRLWKQKIGWDDPVDEATRKEWQDLQKSLSQLHR
FT                 IAIPRCVTFDGVVACEIHGFSDASSYAYGACIYLRSLFPDGSAKLQLLTSK
FT                 SKLAPLHDLSIPRKELCAALLLTRLLKRVLPALNMKLREIVLWCDSTIVLA
FT                 WIGKPLNQLQLFVRNRIAVIQEETSGCKWEYVRSQFNPADVISRGQLPEAL
FT                 EVNSLWWNGPEMLQRVDYETSSLPPLPDDELPELKDVVSSVVVSIEPLTFF
FT                 NKFSHFRKIQRIMGYVLRFIENCRKPAPLRELRRHLTVKELRLSTEAVIRV
FT                 IQHVHLADEIRRVMENQPCKKLANLRPIYVDGLLRVGGRLDKSLLPFENRH
FT                 PIILPNKDPVVRLLIRQMHAEHLHIGQTGLLNVLRQRYWLIHARSTIRAVT
FT                 RNCVRCFRLNPTNTNQLMGDLPASRVVPSPPFAITGLDYAGPIMIKQGSRR
FT                 PVITKAYVCVFVCMTTKAVHLEAVSDLSTDAFLASLKRFIGRRGMVQQLNS
FT                 DNATNFRGANHELKSLFEQFHNQQSVDAIXEFCRSKEIEWHFIPPDAPEFG
FT                 GLWEAAVKSAKNHLKRIVGNVKLNFEELSTVLTEIEAVLNSRPLFAVSNDP
FT                 ADPMVITPAHYLIGRPLTALAEPSLEDVRATRLSRWQHLQLMREHFWRAWS
FT                 RDYLNTLQPRKKNLRAMPNIRKGMVVLLHDRNQPPLNWKMGRVTSVYPGKD
FT                 GLVRAVDVFTGGATYRRAVNKISVLPIEDNCS"
XX
SQ   Sequence 6232 BP; 1691 A; 1487 C; 1474 G; 1574 T; 6 other;
     ttttggtccg atcgaaccgg ataactagta gaatcgcggc ctgagaccac cgtccgtgtg        60
     tgtttgtcag tgtgccgtat ccgttcgagt aatcgccagc gttactcgaa gacaaamgaa       120
     ttttcaacaa ccaccgcccg cgtgcgttgt gtgaccgccc gtgtcactag agacgtttcc       180
     aacaaccacc cccgtgtgag ttgtgtgacc gcccgcgtca ctagaaaaag tagttccgga       240
     caaccatcgc ccgcgtgcgt tgttcaaaag tgcgtgtgtg accgcccgtg tcacaagaat       300
     agtgttttcc aacaaccgcc atccacgtgc gttgtgtgac cgcccgcgtc attggaaagt       360
     gtagttttcg aaaaccattc aagccgaaaa cccttcgaaa accaaaacca ttcgtgtgtg       420
     tgtggtttaa gagtgcgttg tgtgagcgca cgcttaattt gaggaacatt tcccgcgaaa       480
     tcgtgcaagc gtctgtgcgc gttgtgtccg cagtcttgta tgtgctcgtg tgtgtcgcta       540
     ctgttacggc gacgtgtgtg ctgaggcagc ttttgttctt agaaatcata cagaagaaac       600
     tcttgcaatc tgtgtgctca tgtgctgtga ttgttcctgg gatagccgct agctacgtca       660
     gtttgcatgt gttggtgcgc tgttcgcaga ggttacagga aaatacaagt ttgmacaagt       720
     ttgatccgtg tattgaccag cgctaaccac ttagawtcga ggaaacgcta cgagttgctt       780
     gtgtttgtgc gctttgctca gttttgttca cggaaatttg gcgcaaagga ctcgcttcgc       840
     taaccgcgtt cggtgtgcat catacgtcgc aggtttcaac gtgttggtgt actgtgctgc       900
     ttttactaat cgctcgtttt accgtgtgtg tagttgtgta tgggtccaga gacgcgctcg       960
     caaaaacgcg cggaagtgga caaaatggcg accaagcaac aggaattgga aaaggcgatt      1020
     cgtttacgat cacatgtaaa gagtaaactt ctgcgcttgc aaaacacgct gttgcaagct      1080
     aaggatatta cgcatccaca attgcaagta tttgagcaaa acgctacctc gatctatgac      1140
     gattattgca aattccatac gagcataatc ggtctgatta ctgacgatgc gatggaagaa      1200
     catgagaaag aatatactga tttcgaagaa ctgaacaata ctgccttgac caagatttgt      1260
     gagctgaaac tgtcgatgga aacgaaggag gaaaagataa cctcaccacc ccaggtgatc      1320
     ttccagcaaa agccgctaaa aatcccgatt ccaaccttcg atggtactta tacagcatgg      1380
     cctaagttca aagccatatt ccaggacttg atggccaatt ctggagacag cgaggccgta      1440
     aagttgtacc atcttgataa agcgctcacc ggagaagctg cwggaatatt agatgcgaaa      1500
     gtgatgaatg aaggcaacta tgaacacgca tggcaaatac taaccgagag atacgaaaac      1560
     aagcgwatca tcatcgacac ccatattcgc ggtttattct ccctgaagaa aatgacatca      1620
     gaaactcatc atgaattgcg caccttggtt caggaagctt cacgtcatgt ggagagtttg      1680
     aaatatctag gacaagaact gctaggaatt tcagacctga tgatagttca tctgttagtg      1740
     gcagcacttg acaaatccac tcggaaggca tgggagggta cgcaaaacaa aagagaactg      1800
     ccaaactatc atcaaacgat tgagtttttg aaatctcggt gccgaatttt ggaaaattgt      1860
     gaaacagcct ttccagttac aactaatagt aagcttaagc cgcagcagac cagccaggtt      1920
     aagaatatac cacagaaaag ccatgccgct tcctctatta ttccgcagtc atgtgaattt      1980
     tgtggtggct ctcatcgaaa ccaccagtgc actgagttga atacccttac ttccactcaa      2040
     aaaatggaac ggattcgcgc tgcaggagta tgtttcaatt gcctacagaa aggacatcgt      2100
     gttcgagaat gtccatctac aatgaattgc cgtaagtgtc aacgacggca ccacacaata      2160
     attcacgaag aaggcgctct ccagcgaact accagcttca atttgactca acctgctgaa      2220
     accgcagaca ggttgccatt tgttcctgca acgtcaaccc agaagacaaa tcgtgttacc      2280
     aaccctgtat ccagcacctg ctcatcgaat ttggtccagt catgtaagac agttctactt      2340
     caaacagcct tggtacaagt gtttgactac aagaaccagc ctcatctttg tcgagtcctt      2400
     ctagacagtg gctcacaagt gaattttgtg tcagaagaac tcagcaaccg ccttggagta      2460
     agaactacac cagcgaatgt accgatctca ggcatcaacg ccttacgaac ccttgctcgc      2520
     gagaaggtac agttgaggat tcagtcgaga gtgtccgctt tcgaagccga tttggagttc      2580
     ctgataaccc cgagagtcac cggtatcatt ccgtcatcca cgatcaacgt cagtcattgg      2640
     gagattccac acggaatcat attagcagat cccaacttta accagccgga taaaattgat      2700
     ctgttgattg gtgcggaatt gtttttcgac attttcaagc caggcaggct taacgtgatg      2760
     gacaacatac cacagctgcg ggacactcac ttcggttgga tcgtgtcggg agttatcact      2820
     gaaccactgt ccaatctttc gttacagcaa accaatcatg cttccatcga agccgtggaa      2880
     gaaatgatgc aacagttctg gaaaattgag gaggttcccg acgtacctaa gctggccaag      2940
     gaagagatgg cttgtgaaga gcatttctta tcaacctaca accgtgatga aaccggacgt      3000
     ttcgtggtcc gactaccgtt taaggatacc cttcaacaac tgaattcttg ccgtgcactt      3060
     gcacaaaagc gattccttat gctagaaaga cgtcttgccc gtcatcctga tctacagaat      3120
     cagtataagg agttcatcca cgagtatgag gagcttggac attgccatga aatccacgaa      3180
     gcccaagatc ccccacaaca acgagcatat tacctgcccc accacgcagt attgaggccg      3240
     tccagctcaa gcacgaagtg tcgagtagtg tttgatgcca gcgccaaagc ggcgccttct      3300
     gaattctctc tcaacgacgt gctgcaagtg ggtcccgtag tacaaaacga tcttcatttt      3360
     attgtgctgc ggttccgtag aaacaaaatt gcgttttctg gtgatgtttc caagatgtat      3420
     cgtcagatac gtcacgctga ggaagatcaa cgattccttc gtatcttttg gagagatcat      3480
     ccgtcgcaac cattgcgagt tttggaactg agtactgtca cctacggtac tgccgctgca      3540
     ccgtttttag ctacaaggtg tctggtgcaa ttggtagcag aggatggtaa tgcgtttcct      3600
     gttgcctcga gaatcgtctt ggaagaaaca tacatggacg atgtactgtc tggtgcggac      3660
     tcagtagacg aagcgatcga agctcaacgt gaactaaagc agctcctagc gcaaggaggt      3720
     tttcctatcc gcaaatggtg ttcgaattcg caaaggtttc tcgagcagat acctgaagag      3780
     gaccgtgaga aaaaggtgaa gctggaagaa aaaggagtta acgaaaccat caaggtgctc      3840
     ggagtatgtt gggatccgaa cgctgacata tttttcatat cctaccaccc ggagctctct      3900
     tcaaccgaac agcaacttac aaagcgaata atgtattccg agatagctag attattcgat      3960
     ccactcggtc tggtgtcacc tgtcgttgtt ttagcaaagc tcctaacaca acgactgtgg      4020
     aagcagaaga ttggctggga tgatccagtc gacgaagcta caagaaagga gtggcaagat      4080
     ctgcagaaat ctttgtcaca attgcaccgc atagcaattc caagatgtgt aactttcgat      4140
     ggagtagttg catgtgagat acatggattc tccgatgcct catcttacgc atacggcgca      4200
     tgcatctacc ttagaagttt gtttccagat ggttcagcaa agttacaact cctaactagt      4260
     aaatcgaagc ttgctccact gcatgacctc tccatcccac gaaaggagtt atgcgcagcc      4320
     ctcttgctta ccagactgtt gaaaagagta ctaccagccc tgaatatgaa gctccgagaa      4380
     attgtgttat ggtgtgatag cacaattgtt ctggcctgga ttggtaaacc gctcaatcaa      4440
     ttgcagctgt ttgttcgtaa tcggatcgct gtgattcagg aagagacgag tggctgcaaa      4500
     tgggaatacg tccgttccca gttcaatcca gccgacgtta tatcccgagg acaactgccc      4560
     gaggctctag aagtaaacag tctttggtgg aacggtcccg aaatgctgca gcgagtagac      4620
     tacgaaacat cctcgctacc tccgctccca gatgatgaat tgcctgaatt gaaggatgta      4680
     gtttcgtctg tggttgtaag tatcgagcca ctaacgttct tcaacaaatt cagtcatttt      4740
     aggaaaattc aacggataat gggatatgta ctccgattca ttgaaaactg ccgtaagcct      4800
     gctccactac gagaacttcg ccgtcattta actgttaaag agttacgtct ttcgaccgaa      4860
     gcagtcatca gagtaatcca acacgttcat ttggcggacg agatacgacg agtaatggaa      4920
     aaccaaccct gtaagaagct agcaaacctt cgcccaatct atgtcgacgg gttgctacgt      4980
     gtaggaggtc gcttagataa atccttgctt ccgttcgaga atcgccatcc aatcattcta      5040
     cccaataagg atccagttgt acgtttgctg attcgacaga tgcatgcgga acatcttcat      5100
     attgggcaaa cgggcctatt aaacgtactg agacaacgat attggcttat ccacgcccgt      5160
     tcgactattc gggctgttac gagaaattgc gtgagatgtt tccgactgaa cccgacaaac      5220
     actaaccagc tgatgggaga tttacccgct tccagggttg taccttcacc gccattcgct      5280
     atcacgggat tggactacgc tggtccaatc atgataaagc aagggtcacg ccgtccagtg      5340
     atcaccaagg cctatgtgtg cgtatttgta tgcatgacta ccaaagctgt gcatttagaa      5400
     gcagtatccg acttaagcac cgatgctttc ctggcttccc taaagcgttt catcggtcgt      5460
     cgtggaatgg ttcagcagct taactctgat aatgcaacaa atttcagagg agccaaccac      5520
     gaactcaaga gtctttttga gcagttccac aatcagcagt cggtggatgc cattsaggag      5580
     ttttgtcggt ccaaggaaat tgaatggcat ttcataccac cagatgctcc cgagtttggt      5640
     ggcctctggg aggctgccgt gaaatctgca aagaaccatc taaaacgcat cgtcggcaac      5700
     gtcaagttga attttgaaga gctgagcacg gtcttgactg agatagaagc agttctcaac      5760
     tctcgtccat tattcgctgt gtccaacgat cctgcggacc cgatggtaat tacccccgcc      5820
     cactacttga taggacgacc cttaaccgcc ctggctgagc cgtctttgga agatgtacga      5880
     gccacccggt tgtctcgttg gcagcatctt cagctcatgc gcgagcattt ttggcgcgca      5940
     tggagccgcg actatctcaa cactctgcag ccaagaaaga agaacctgcg agccatgcct      6000
     aacatccgga agggtatggt tgttcttctt cacgatcgaa atcagccacc tctaaactgg      6060
     aagatgggtc gagttacgtc ggtctaccct ggcaaggatg gtttggttcg cgctgttgac      6120
     gtgttcacgg gaggagctac ttatcgccgc gctgtgaaca aaatctcggt actacccatc      6180
     gaagataact gttcctgaat tcgtattttg agtaaactca acggggggag ta              6232
//
ID   BEL-16_AnFu-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-183
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 720-720 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 183 BP; 65 A; 44 C; 41 G; 33 T; 0 other;
     tgttccgttc ccatccggaa cggaagggta aaacacaacg cccatcacta ttgacaggag        60
     cggggaactg aatgtgaaat gtaacaaata aatagagtct agtgtcaacc tccaaactga       120
     atagattggt ccttcgaaga agaaaaaacc cagaagcgtt cgacccacag ccaggctcga       180
     aca                                                                     183
//
ID   BEL-16_CQ-I repbase;    DNA;    INV; 1788 BP.
XX
AC   AAWU01032461;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_CQ_;
KW   BEL-16_CQ-LTR; BEL-16_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1788
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 185-185 (2011).
XX
DR   Genome; AAWU01032461; Positions    1321    3108.
XX
CC   'ATATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..1788
FT                 /product="BEL-16_CQ-I_1p"
FT                 /translation="MPDPIRPCHHVHVVNCFGRGPEARETTHVDAYLLRRH
FT                 QSCVGVPNETEHLAWNLPKCSIAIGHSKPSSHSCTPQTAGQQKRPSATSIS
FT                 KESTSFSVFQHPHSPQPTVQNHARPLLQHKLPGIGPGPRANKCTPSTSTKT
FT                 SLKFRLKLADLKLKKIQQEQDLLKKKLDLERDVFNRKYALLGVSSDAQPSD
FT                 HQVTTVDYSSPAQSGAIVSQTSLAKLNPADVPNPASSQRKWHWTPSTTCST
FT                 ASKPPHTEVAKSKQRANFARATNDGQLEEENASFQLQQHYRSAGQQYLWTA
FT                 TNHTDVYRAANAWPIVRSRIVRYQYQALTISCFPILTQRRPTTQILSRIPT
FT                 TYHEKENKKDRQMFTFGSYYDTQVSLTNRPTQSLVSMECDNTEFNDLRNSV
FT                 VQMTKLLRTNLRFFQTSYFNTLRVPINSAASCIYKQKAAVLRGAEQVRLHF
FT                 QSSWNTLVPSSLTGNSSARGISLHFDPPKGPDLMFVSKVNVERGTYQDRIS
FT                 CLQSVRAHTITTRTSTPQHTADLHIIVSTSYMKIAFRKGYSPAEWTPSPAS
FT                 SLLDVVDHFHLEPSGYSVRWKVNRTDWFGVPGGT"
XX
SQ   Sequence 1788 BP; 522 A; 520 C; 380 G; 366 T; 0 other;
     ttttaataaa ttcgtttgca cacgagcaaa cgcggccaat ccggtaatgc cggacccaat        60
     ccggccatgt caccatgttc acgttgttaa ttgctttggc agagggccag aagccagaga       120
     aacgacgcat gttgatgcct atctgctgag acgccaccaa agctgtgttg gagtaccaaa       180
     tgagaccgag caccttgcct ggaatttgcc caaatgcagc atcgcgatcg ggcactccaa       240
     gccaagctca cattcatgta ctcctcaaac agctggtcag cagaaacgtc cttctgctac       300
     gagtatcagc aaagaatcaa ccagtttctc cgtttttcaa caccctcact cacctcagcc       360
     cacggtgcaa aaccatgcca ggccactgtt gcagcacaag ttgcccggca tcggaccagg       420
     tccacgagca aacaaatgta cgccttccac atcaacaaaa acctccctca agtttcgcct       480
     caaacttgcc gatctcaagc ttaaaaaaat acaacaagaa caagacctgc tcaagaagaa       540
     actggatctg gaacgtgacg tttttaatcg aaagtatgca ctgcttgggg tttcttccga       600
     tgcccaacca tctgaccatc aagtgacaac cgtggattac tcaagcccag ctcaatcggg       660
     cgcaatagtg agtcaaactt cactcgctaa actcaatcca gctgatgtgc caaatccagc       720
     gtccagtcag cgcaaatggc actggacacc atctacaaca tgctcaacgg ccagcaaacc       780
     cccgcacaca gaagtcgcca aatcaaaaca gcgtgccaac ttcgcacgag caaccaacga       840
     tggacaactg gaagaggaaa atgccagctt ccagctccaa caacattacc gatccgcggg       900
     tcaacaatat ctgtggacgg ccaccaatca caccgacgtc taccgtgccg ccaacgcttg       960
     gccgatcgtt cggagtcgta tcgtccgcta ccaataccaa gctctgacga tcagctgttt      1020
     tccgatctta acacaacgaa gacccacgac acaaatactg tctcgcatcc cgactactta      1080
     ccacgaaaag gaaaacaaga aagatcggca aatgttcacg ttcggatcat actacgacac      1140
     acaagtgagc ctaaccaacc ggccaaccca gtcgcttgtg agtatggaat gtgacaacac      1200
     cgaattcaac gacctgcgaa actcggtcgt ccagatgact aaactcctca gaacaaacct      1260
     gcgattcttc caaacatcgt acttcaacac cttgcgcgta ccgattaatt cagcagcgag      1320
     ctgtatctac aagcagaagg ccgcagtact acggggtgct gaacaagttc gactacattt      1380
     ccagtccagc tggaacactt tggtaccttc aagcctaacc gggaacagca gtgcacgagg      1440
     aatatcactt cactttgacc cgccgaaggg acccgatttg atgtttgtgt cgaaagtaaa      1500
     cgttgaacgg ggaacctacc aagatcggat cagttgttta cagagtgttc gcgcacacac      1560
     aatcaccacg agaaccagta caccacaaca caccgcagat ctacacatca tcgtgagtac      1620
     gagctatatg aagattgcgt tcaggaaagg ttactcacct gctgaatgga ctccttcacc      1680
     cgcaagttca ttgcttgacg tcgttgacca ttttcacctg gagccgtctg gatactcggt      1740
     gcggtggaag gtaaaccgca cagattggtt cggtgtacct ggggggac                   1788
//
ID   BEL-16_CQ-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   AAWU01032461;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_CQ_;
KW   BEL-16_CQ-I; BEL-16_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-502
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 186-186 (2011).
XX
DR   Genome; AAWU01032461; Positions     819    1320.
XX
SQ   Sequence 502 BP; 151 A; 112 C; 92 G; 147 T; 0 other;
     tgttacgcgc cgaagcgctt aacgcacctc ctgatcagtc aatgcagttg tcacctgcat        60
     tcgactgtca atctgacttg agcgctggac caaaagtcat ccgaattggt taagaagcag       120
     aagtgaaatc catgtgtgct gcttcacagc gatattatct ttaaaattta ctaatttctt       180
     taattttctg ttctcagaac ggtaatttat tcagtgcaac cacttggggt taaaatctaa       240
     tgaattttgc acctttttcc tcaattagct ttatgtgaaa ttacataacc taaaatccgt       300
     tgaaccatga gagatgatca tgagttcagc caaaccaagc tcgaccggat ttgccgattg       360
     gccactgaat tgcattaggg agcaaaaacg aatttattaa tctaccaaat ataccgacta       420
     agacatgcaa acagctttgt tttaatgtcc ccggactgtg attaataaac cggatgaatc       480
     ctcccgttgg ccacagccaa ca                                                502
//
ID   BEL-16_DAn-I repbase;    DNA;    INV; 7523 BP.
XX
AC   AAPP01018827;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DAn_;
KW   BEL-16_DAn-LTR; BEL-16_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7523
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018827; Positions   24333   31855.
XX
CC   'AATAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           305..2116
FT                 /product="BEL-16_DAn-I_2p"
FT                 /translation="MDRENIAPKIIIEPAVEEASAQGLLDAQQEIGQEIAR
FT                 CIRNYKKDGPNRKQKASYFQTKLYILEEAWERFGENDEKIQGTARTESYIK
FT                 YAEDLRTSCMKYAATFESSRDKLMQGTSHQEEAQEQVENQVQEQSPLVVPM
FT                 DKRLAGLCRRQGELLESVSGALREFKASGGGPGDLLKTLWAQVQEIHLTVY
FT                 EEFENPIDSGYNKQAYLQLQAEVQNALMAKVIPTTNSIDVQMARINLPKFD
FT                 GDAMEWKQFHDLFSCMVHDTNMPSVKKMWYLKSALSGNAERLIRHIELNED
FT                 NYLHAWRIIVGSYDNPRLIANTVIRRLLHQSPVSDSAKSIQELYITTLETL
FT                 ASLKGLGINVSTWDAFLVVLLTDKLDMTNRSLFEQTVGNSVEIQPLQVMLE
FT                 FLEQRIRVLSSGKPTAAFKREPKNLACASSTSDKQSLCYYCKAPNHALYKC
FT                 EEFRAKTASERLNWVQKQKMCVNCFKTDHKSKECKGRSCFKCDKKHHTLLH
FT                 LEVTNLHSPTVGAAAYKNYNLLATAKVAVQTENGQVAKFRALLDSGSQINL
FT                 ITERLASMLSLKRHDTKLRIEGIGGQPRMSRARVTILVSSLHGDFSQRIEA
FT                 FVLPHS"
FT   CDS           2638..5301
FT                 /product="BEL-16_DAn-I_1p"
FT                 /translation="MKEYEALEHMKFVPTTHVPNNHYFIPHHCVLKPDSSS
FT                 TKLRVVFDASCKTSSGKSLNDILHTGPTVQSELMAILLRFRIHKYVFAADI
FT                 EKMYRQVWINPDNQFHQLIVWRNDPSEDLKYYRLKTVTYGTKTAPFLATKC
FT                 LNHLAIRSRDNYPLGSAALENDFYVDDCLTGADSVAEAVQIQSELNKILLP
FT                 HGFKLRKWCSNNAELLQGIPKEDTVSDVKLGETLDQYSVKTLGLIWMPNKD
FT                 KLCGRTQQSEALVITKRVVCSELSQIFDPLGLFAPVVVKAKIFMQHLWESK
FT                 MAWDDELPLELQSDWKTYRSDLQSLNKLQIPRHIFDGKVPVTQELHTFVDA
FT                 SEKAYGAAIYVRATYKNKQTSVRLLCSKSRVAPTAKQSLPRLELCAAVLGA
FT                 ELTHRVRQDLRLSLDTVAGFFWTDSSVVLGWINATASTYHTFVANRIAKIQ
FT                 EVTEQCQWRHVSSANNAADVLSRGTTASKLSSNSMWFYGPLFLYGSKESWT
FT                 KMPAIISTNLEQKTKFASMAAAKDIFRGEIYNCRHSNSFYKLQRIVAYMLR
FT                 FCYKSNRAPTKALCLEELSQARIIILRTIQQIEFNAERNQLKRYKTVDKKS
FT                 SLVSLAPIVGSDGLIRVGGRLEHSNLSEDAKHPVLLPYNDTIVKMILRELH
FT                 ETNMHCGAQALRAIARQQYWIINDKTMARSILHNCVRCTRVKPKLMSQIMG
FT                 NLPSERVTQARPFFNSGVDYCGPIWIHHKVRGKRPDKAYIAVFCCFATKAI
FT                 HLELVSDLTTDAFLAALRRFLGRRGKCQTIHCDNATNFIGANNKLKELETS
FT                 IFSTNAQDSIVQHCNKREINFKFIPPRAPSFGGLWEAAVKSAKRLLVSITA
FT                 TASLTNSTLWSLKLKRSSIHGRLLPCHQTPLTNQL"
FT   CDS           5145..7496
FT                 /product="BEL-16_DAn-I_3p"
FT                 /translation="MGSCGEIRKTAASINYSHGVFDELNTVVVEVEAILNS
FT                 RPITPMSSDPTDESALTPGHFLIGEPLTAPPDTNIIPGGKPLVKRWELVSR
FT                 LKHAFWKQWSCEYLQELQNRHKWKHASPNIKEGLLVLIKEDNVPVMSWPMG
FT                 RVLKTYPGPDNLVRVVDIKTSSGVFKRPVTRLAPLFPEEINNKHPLDDTLK
FT                 ADQSDEPPVQRKKETLSSMPVILALMLLLPLAMATPIKVTEFSNKPGIFYE
FT                 RLGTTRMVVSEWTMIVYYDLDPYWNDMKVLSGGVTELAHKCQELTNVAACS
FT                 SILEHFKHIIAELEAGNNLMHHSRQRRSPFNVVGTMANSLFGVLDSTYAEE
FT                 MVKTITKVKGNENFLLQLLQNQTSIVDSTINLVRKGRLATNNRLRSLEQQM
FT                 TLINKQRGQYQGAHLEQAFMILTTQLNLLANGLQRMQSEITNVLTDARHKT
FT                 ISPILISPTQLRDQLDQMRDHLPPDQILPVATTDVVQLYKIMYAQGSTTDT
FT                 HAIFRITIPLVSSELLDVFSIVPIPIWESKGWTLYNLQTPIIAVNAHRDRF
FT                 IGFSEDEFKRCTSIKIDQHICFNHLTAYNVDSRCEFQLFNNKTGTECHRNP
FT                 VHSSMVWLKTHQSNQWIFATKDSMELQAVCSGVSSTVNIKATGILKLPIGC
FT                 TARNFNISLTTFGTMTTEVQTSFSRFGNISEPLKPIEEPSEFGLRAQSPSI
FT                 DDTELEILQHRLADLQRKDAPYQLDHQTTMSYTAFAISVIILILIGILIMR
FT                 HRRSIWAPKLRGTTRSSIPEPTPRQFTIELDDG"
XX
SQ   Sequence 7523 BP; 2411 A; 1717 C; 1669 G; 1726 T; 0 other;
     ttttggtgac cccgacgtga tttgcaagcc cagtgatcct tcgaacaaaa gtcaaaaagg        60
     aacgaatagt gatttctatc gttccacaat aaagatatca ggaagactcc tgctaagaga       120
     gcaacaggat cttcacagca gtgtgacgct gtccctttaa tcggtagatt aagggcccca       180
     cacctccctc agttcataaa aaagggttca gtttcttcga ccactctcgg ttgcgagttg       240
     gagcgcatcc agctactaat agcaaataaa tcactaccaa cggtcagaaa cgaagaacga       300
     aaatatggac agggaaaata ttgcccccaa aattattata gagccagccg ttgaagaggc       360
     gagcgctcaa ggcctcctag atgcccagca agaaattggg caggagatcg caagatgcat       420
     ccggaattat aaaaaggatg ggccgaatcg aaaacaaaag gcatcatatt tccaaacaaa       480
     gctatacatt ctcgaagagg cttgggaaag gttcggcgaa aatgatgaaa aaattcaagg       540
     aacggccagg accgaaagct acatcaagta tgctgaggac ctccggacca gttgcatgaa       600
     atatgcggca actttcgaaa gcagccgtga caagctgatg caaggcacaa gtcaccagga       660
     agaggctcaa gaacaagtag aaaatcaagt tcaagagcaa tctccactcg tagttcccat       720
     ggataaacga ttagccggat tatgtcgacg ccaaggagaa cttttagagt ccgtaagcgg       780
     tgccttacga gagtttaagg catccggggg aggcccagga gacttactaa aaactttatg       840
     ggctcaggtc caagagatcc acttgacagt ctacgaggaa ttcgaaaacc cgatagacag       900
     tggatataac aagcaggcat acctacaact gcaagcagag gtgcagaatg cacttatggc       960
     aaaggttata cctactacaa atagcattga tgtgcaaatg gcccggatta accttccaaa      1020
     atttgatggg gatgccatgg aatggaaaca attccatgat ttattttcct gtatggttca      1080
     tgatactaac atgccatcag tgaagaaaat gtggtaccta aaatccgctc tctcgggaaa      1140
     tgcggagaga ttaatacgcc acatcgagct aaatgaggac aactacttac atgcatggcg      1200
     cataatagtt gggtcatatg acaatcctcg gctcatcgcg aatacagtta ttcgtcggct      1260
     acttcatcag agcccggtct ctgacagtgc caaatcaata caggagctgt atataacaac      1320
     tctggaaacc cttgcgtcat taaagggact aggcatcaat gtatccacat gggatgcatt      1380
     tttggtggtg ttgctgaccg acaagcttga catgactaat agaagtctat ttgagcagac      1440
     agttggtaat tcagtagaga tccagccgct acaagtaatg ctggaattct tagagcaaag      1500
     aatcagggtc ttgagctcag gaaagccaac ggcagcattt aaaagagagc cgaaaaatct      1560
     agcgtgtgcg tccagcacgt cagataaaca gtcattatgc tactattgca aggctccaaa      1620
     tcacgcgtta tataaatgtg aggagttccg cgcaaaaaca gcatccgaaa gattgaattg      1680
     ggtacaaaaa caaaaaatgt gtgtcaactg tttcaaaacc gaccacaaat caaaggaatg      1740
     taaaggaaga agttgtttca agtgcgacaa aaaacaccac accctgttgc acctggaggt      1800
     cacaaacctt cattccccaa ctgtcggtgc cgcggcttac aagaattaca atcttcttgc      1860
     aacagcaaag gtagcggtcc agacagagaa cgggcaagta gcgaaatttc gtgccctgct      1920
     agattcagga tcccagatta atttgatcac tgaacgatta gcatcaatgt tgtcactaaa      1980
     gcgccacgat acaaagctcc ggatcgaagg cattggagga caaccaagaa tgagcagagc      2040
     aagagtaact attctcgtta gctctcttca cggggatttc agccagcgca tagaagcgtt      2100
     tgtgcttccc cacagctgac caaccagctc aaccactaac acattgtgcg ttaaagatac      2160
     ccaatgagtg tccattagcg gatccccagt ttgataaacc tggaaggata gatctactaa      2220
     tcggcaccga gcactattac tcgcttctcc ttccaaatca gcagaaggtc ggaagagatg      2280
     gtgccatgct acaaaacacg aaactcggat ggattgtagc aggcagagtt aaatctaaaa      2340
     ctcaatcagc catagcctgt ggtgtcggtg tcggtgaaga aactgacgca cggattgaaa      2400
     ggttttggaa gctagataat ttggaaaacc agacgaaaca tcgatctccg tcagaggcac      2460
     attgtgagaa acactttaga aactctgaag agagcagaag acggacgatt tattgtgaaa      2520
     ttgccgttcg ccgagcaccc ttcagccctg ggggagtcga aagaaattgc gatcaaaagg      2580
     tttttagcat tagagcgacg attaaccggt gatgttcgga aaggttattc tgagttcatg      2640
     aaagaatatg aagccttgga acatatgaag tttgttccaa caacacatgt acccaacaat      2700
     cactacttca taccacatca ctgtgttctg aagcctgaca gcagcagcac aaagctacga      2760
     gtggtgttcg atgcttcatg caaaacatca agtgggaaat ctttaaacga catattacat      2820
     acaggaccca ctgttcagag cgagctaatg gccatactac tacgcttcag aatacacaag      2880
     tatgtgttcg cggcggacat agaaaaaatg taccggcaag tatggatcaa tccagataat      2940
     cagttccatc agcttatagt ctggagaaat gatccatccg aggatcttaa gtactataga      3000
     cttaaaaccg tcacgtatgg aaccaaaaca gctccgtttt tagccacgaa atgcctaaat      3060
     catttagcaa tccggtcacg ggacaactac ccattggggt ctgcggcgct tgaaaatgat      3120
     ttttacgtag acgattgctt gacaggtgct gactcagtgg cagaagcagt tcaaatccaa      3180
     agtgaattga ataaaatatt gctaccacac ggtttcaaat tacgaaagtg gtgttcaaat      3240
     aatgcagaac tactacaagg aataccaaaa gaggatactg tgagcgatgt taagttgggt      3300
     gaaaccttgg accaatacag tgttaaaaca ctcggtctca tatggatgcc caataaagac      3360
     aaactttgcg gacgaacgca gcaaagcgaa gcgctggtca tcacaaagcg agtggtgtgc      3420
     tctgagttgt cacaaatctt tgacccatta ggtttgtttg cgccagtggt cgtaaaggca      3480
     aagatattca tgcaacacct ctgggaatca aaaatggctt gggatgatga attgccttta      3540
     gaacttcagt cagactggaa aacatatcgt tctgacctgc aaagtctaaa taaattgcaa      3600
     attccaagac acatatttga cggaaaggtt ccagtcacgc aagaactaca cacttttgtg      3660
     gacgcctcag aaaaggccta tggcgcagca atatacgtcc gagcaacgta taaaaataag      3720
     caaacctcgg tgagactgct atgttccaag tccagagtag cacccacagc aaagcaatcc      3780
     ttgcccagac tagagttgtg cgcagcagtc ctaggcgcag aactaacgca cagagtcaga      3840
     caagatttac gcttgtcgct agacacggtt gcggggttct tttggactga ttcatccgtc      3900
     gtgttagggt ggatcaatgc aacagcttcc acttaccata cgtttgtggc aaatcggata      3960
     gctaaaattc aagaagtgac ggagcagtgt caatggcgtc acgtatcatc cgccaacaat      4020
     gcagccgacg tcttgtccag aggaacaaca gctagcaaac tctcgagcaa cagtatgtgg      4080
     ttttatggac ccctgttcct atatggatca aaggaaagct ggacaaagat gccagccatt      4140
     atttcgacga acttagaaca aaaaacgaaa ttcgccagca tggcggccgc taaagacata      4200
     ttcagagggg agatatacaa ctgtaggcac agtaactcct tctacaaatt acaacgaatt      4260
     gttgcgtaca tgctgcggtt ctgttataag tctaatagag cgccaacgaa ggcgctatgt      4320
     ctggaggagc taagccaggc acgcattatt atcctgcgca cgattcagca aatcgaattt      4380
     aacgcagagc gtaaccagct caaacggtac aaaacagtgg acaaaaagag ttctcttgta      4440
     tcattggctc ccatcgttgg atctgatggg ttaattcgag taggaggcag actcgaacat      4500
     tcaaacctat ccgaagacgc aaaacatcca gttctgctcc cctacaatga cacaattgta      4560
     aaaatgatct taagagaact acatgagacc aacatgcatt gcggtgccca agccttgcgc      4620
     gccattgcta ggcaacagta ttggatcatc aatgacaaaa caatggcaag aagcattcta      4680
     cataactgcg tgcgatgtac cagagtcaag cccaaattaa tgagtcaaat catgggaaat      4740
     ctaccgagcg agagagtcac acaggctcgg cccttcttta actctggagt agattactgc      4800
     ggccccatat ggattcatca caaggttcga ggaaaacgtc ccgacaaggc ctatatcgca      4860
     gtgttctgtt gcttcgccac gaaagcaatt catttggagt tggtaagcga cctcacaaca      4920
     gacgcctttt tggccgctct ccgccggttt cttggacgtc gagggaagtg ccagacaatc      4980
     cattgcgata atgcaacaaa ttttattgga gccaacaata aattaaaaga gctcgaaacc      5040
     agcatcttct caaccaatgc gcaggactcc atagttcagc attgcaacaa aagagaaata      5100
     aacttcaaat tcattccccc acgagcacca tccttcggtg gcctatggga agctgcggtg      5160
     aaatccgcaa aacggctgct agtatcaatt acagccacgg cgtctttgac gaactcaaca      5220
     ctgtggtcgt tgaagttgaa gcgatcctca attcacggcc gattactccc atgtcatcag      5280
     accccactga cgaatcagct ttaacgccag gacacttcct gattggagaa ccactaactg      5340
     ctcctcctga taccaacatc attccgggcg gcaaaccatt agtaaaaaga tgggaactgg      5400
     tatcacgact gaagcacgcc ttttggaaac aatggtcatg tgagtacctg caagaacttc      5460
     agaatcgaca caaatggaag catgcatctc cgaatattaa agagggattg ttagtcctta      5520
     taaaagagga caacgtgcct gtaatgagct ggcctatggg aagagttctc aaaacatatc      5580
     ccggaccgga caacctcgtt cgggtagtgg atatcaaaac gtcatctgga gtattcaaga      5640
     gaccagtgac tcggctagcg ccattgttcc cagaagaaat caacaacaag cacccattag      5700
     acgacaccct caaggcggac cagtctgatg agccgcctgt acaacgcaaa aaggaaacac      5760
     tctcatcaat gcctgtgatt ctagcgctta tgttgttact tccactagcc atggcaacgc      5820
     caattaaggt aacggagttc agtaataagc caggaatatt ctacgaacgg ttgggaacca      5880
     cgagaatggt agtgtcagaa tggacgatga tagtatacta cgacttggat ccctactgga      5940
     atgatatgaa ggtactttca ggtggagtaa cggaactcgc acacaaatgc caggaattga      6000
     ccaacgtagc agcatgcagt tccatcctag aacattttaa acatataatt gcagaacttg      6060
     aggcaggaaa taacctgatg catcactctc ggcaacgtag atcaccgttt aatgttgttg      6120
     gaactatggc caattcatta ttcggtgtac tcgattccac atacgcagaa gagatggtca      6180
     aaactatcac taaggtgaag ggtaatgaga acttcctcct acagctgctt cagaaccaga      6240
     cgtccattgt tgactccacc atcaatttgg tgcgaaaggg aaggttggct accaacaacc      6300
     gcttacgatc tttggaacag cagatgaccc tcataaataa gcaacgagga cagtaccaag      6360
     gcgcacattt agagcaagcg tttatgatcc tcacgacaca attgaatcta cttgcaaatg      6420
     gtttacagcg aatgcagagt gagataacta atgtattgac tgatgctcgc cacaaaacaa      6480
     tcagtccaat tttaatatca cctacacagt tacgagacca gctcgaccaa atgcgggatc      6540
     atttaccacc cgaccagatc ttgccagtag ccacaacgga tgttgttcag ctatacaaaa      6600
     taatgtatgc gcaaggcagt acgactgata ctcacgccat ttttcgaatc acaataccat      6660
     tggtgtcgtc agaattatta gatgtcttca gcatcgtgcc cattccaata tgggaatcga      6720
     aaggttggac gctgtacaat cttcagacac cgatcatagc tgtcaatgcc catagagatc      6780
     gctttattgg gtttagtgaa gacgaattca aaagatgcac ttctataaaa attgaccagc      6840
     atatttgttt caatcactta acggcataca atgttgacag tagatgcgaa ttccagttat      6900
     ttaataacaa gactggaaca gaatgtcaca gaaatcctgt gcactctagc atggtgtggt      6960
     taaaaactca ccaatctaac caatggatct tcgcgaccaa ggactccatg gaacttcagg      7020
     cagtatgcag tggagtttca tcaacagtca acataaaggc gactggtata ctgaaattgc      7080
     ccattggttg cacagcacgc aatttcaata taagtttgac cacattcggc actatgacca      7140
     ctgaagtaca aacttcgttc agtcgattcg gaaatatctc cgagccccta aagcccatag      7200
     aggaaccatc agaattcggg ttaagggccc aatcaccaag tatagacgac acagaattag      7260
     agatcctaca acatcggtta gccgatctac aaagaaaaga tgcaccatac caactggacc      7320
     accagacaac tatgtcatac acagcatttg ccatttccgt catcatactg atactgatag      7380
     gcattctcat catgcgacac agacggtcga tttgggcgcc aaagcttaga gggactacaa      7440
     gaagttcaat tcccgaacct accccaagac aatttactat agagctggac gacggttgaa      7500
     cacctgttca acggccggga gaa                                              7523
//
ID   BEL-16_DAn-LTR repbase;    DNA;    INV; 474 BP.
XX
AC   AAPP01018827;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DAn_;
KW   BEL-16_DAn-LTR; BEL-16_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-474
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018827; Positions   23859   24332.
XX
SQ   Sequence 474 BP; 193 A; 87 C; 54 G; 140 T; 0 other;
     tgttaagtca taagcattta atatttaggt cacaagaaca cgatttacac ataacaaaga        60
     cacaagtaca ataaatatat aataaagaaa atattaggtc aaaaaaccta cataaaacga       120
     tgaacattaa aaaagaccaa acactacaga aacaacaaac tgaaaagcag caaggactgc       180
     tgacattaca agttcatgca accgacaaaa tattgcagaa ttacactttc aaaattgtta       240
     atttatcatt tttatatttt ttgctatatt ccattaattt accacttaag caatatctat       300
     gtatcgaatt agctataaat attgaacctt tatatgaata aaatcagtct cagacaaatc       360
     tactctgaac tcagtaattt ctccatgtcc aatttgttca agtgcaagtt gcggcaacaa       420
     cccagcaatc ggtttatgta ccctttgctt ctattcaaac atttcagata aaca             474
//
ID   BEL-16_DEl-I repbase;    DNA;    INV; 4741 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4741
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 446-446 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(928..1221,1225..1452,1350..1895,1814..2377,
FT                 2381..2617,2566..2790,2727..3464,3308..4144,
FT                 4044..4589)
FT                 /product="BEL-16_DEl-I_1p"
FT                 /note="reverse transcriptase and peptidase A17."
FT                 /translation="FSAASVITRFKFAKGVPXCINCLRKGHNVSACKAVHW
FT                 RVCSKPHHTLLHRYTADANIQQYLDPAASHMGGKLQNIQTFCSRIMQAPSM
FT                 HSKLFWRQRLILKVAPVRFSQAGLLDSGXQVNFITDXLARGLQLKRIRKEI
FT                 NLLGVGNLAYLRTKLXKQQQVLALINMKWLLTSSFFVGSWKSSLSAHQVVX
FT                 TTTSSRINKYEMVVDFVVLKSISSYHPEKGVSIESLNIPPNLPLADPAFHK
FT                 PQNVDLLLGADAFFDLLKDGQIKQENTLTLQNIVGGRCKSKQPQRTEACSM
FT                 VSIVEESGPLEKRFWELEQVPNVSGDKLYTPEEMLCDCKYPYRLNLAQRVS
FT                 DHRLKWQEGVFYRLQVSLPFKSSPTCLGSSFEMARRRFLSLERRLTKNPNT
FT                 QLMFNQFMEEYLALGHMTAIEGSIPKDSHCFIPYQCVERPQSTSTKLRVVF
FT                 DTSCKTTSQVSLNDLLMVGPTIQPCLYSTLLRFRCRKYALVADITKMYRQV
FT                 EVGEAQRIFSINCMEKRCCQXLKNLSPKYCYVWNSKCFISSSKMLKISRDP
FT                 FAISPQGARCLGTDFYVDDLLTGADTEQEMTVLRRELIEILEPAXFVLTKW
FT                 ASNCKTGKRMRKFYTEIFKISRLLDTNAEILHGDLQDLKTLGLTWNPQTEV
FT                 FKYGVRRVSTNQVVTKRSILSFIATXFDPLGLLCPIITRSKYFCKRLGFSF
FT                 GLVMPNNNQIEIFLQEAWLLSLNWDDPVPQDFEKKWNLVKNDYAFLEKLVI
FT                 PRFVGTRKEAVCQIHGFADASTRVVEPNGASVQLLTAKSRVAPLKTKTVSR
FT                 LELCAAHSLAKLWESSAVWRHVPTKENPADLVSRGCSVDELDTSFWYNGPS
FT                 FLQKEAECWPINSHFQLSETGAALETKKARVALIAADVELXPILNIVERSS
FT                 SYLKVVRIAAYMYRFINRRKKISWNSICPSRTSVEQRFLKTKXDFKYCRKV
FT                 IVVSESSSHCGXYVSIYQPKEKDILEFNLSVADERGTAFLKVVEAIQKTAF
FT                 AEEIVKLEKSANIRAGIQKLNPFLSVEQFGTSSYSLLRVGGRLLHAPIAHN
FT                 AKFPLLMPKNCKFVTLYLRHLHRTNCHAGPRSLVGLLRQVVWLINARRECS
FT                 TIVRQCVHCFHYKPKLLSQIMGNLPRDRLHGNRPFEVSGVDLFGPVKVSLG
FT                 IRGKQPIKMYIAVFVCFASKAVHLEIVKDLIHLFYAYPGLWVVVVLLSNFI
FT                 ATMPRILWELLESYIYFMPIQVCGSSWSCCQTLLRQCHEFCGSCSNPEGAF
FT                 GTFRHQRPEHHVVCCGPPFTIEFIPPRAGGRAPYRHSGGRSRPKFEAAHRR
FT                 QWQSQRGRGCHASSSASRHNASNAAARIRAAKGRRQPHVLAEMAASLSNQT
FT                 AVSERLVAGLSSEPTAAREMDQRRGQSSDRNSGGNPRSPSYG"
XX
SQ   Sequence 4741 BP; 1364 A; 981 C; 1049 G; 1334 T; 13 other;
     tgcgcttttt tagttggaga tcactcaaac kgagttcgat ttgtttcagt gactttattc        60
     ggagttacag tggaacattt tgcagaatta aaactttgtg aaagtggaac atttcaacaa       120
     ttataccttt gaaaaatatt caaatcaatt tttttttaat tttcttaaaa atacctaaac       180
     gtggagcttc tgacagcaat acttctattg tagaagaagc tgattcagaa aatattatga       240
     gaaaattgga ttcagttaaa aaggatatta atcgtatagc ttaagccgtg caaaataaaa       300
     cgatttcgtt taactctgta cagttggatt gtcgtttgag tattttagat acgtatatag       360
     atcgtgcgtt ttcgttacag ctgcaaattg aggatgtcga tccggamttg tcatccatct       420
     gaacttgaag atttatgcgt gctaaccagg gcattgttat tgtcagtaaa aactccagcc       480
     ccaccaacca atctaaacga atcagtgtta aatacaacts tatcgaatac aaggcacctg       540
     cctcgaatgc agttgcccaa gttgtaatgg tggtcattat tctgaattca aaaactttat       600
     tggattactt tcgagcataa ttgatagtga cccatcccta tgctacgcca attccatctg       660
     caagcgtatt gcggtcgctt attgatatag ttttggcaat atatgagtcc ttattgtccg       720
     ttggcgacga aaaggttatt gtaaacgcac tattatttca cattgtcatg tcaaaggttg       780
     acggaaagac tcgctctagg tgggaagaga gtttagatta tcaaaaaatt ccgtaatggt       840
     ctgagtgcgt tacagccctt actaagcaac ttcagcaata agaacctctg caagtctatt       900
     gatcatttta gcccgacatg tccataattc tcagctgctt ctgtcataac tcgttttaaa       960
     tttgccaaag gggtcccamt ttgcataaat tgtttgagaa aagggcataa tgtatccgcc      1020
     tgcaaggcag ttcactggag agtatgctca aagccccacc atacattgtt acatcgctat      1080
     ackgctgacg caaacataca acaatattta gatcctgcgg caagccatat ggggggcaaa      1140
     ctgcagaaca ttcaaacctt ttgtagtcga atcatgcaag caccctcgat gcacagcaag      1200
     ttgttttggc gacagcggtt gtagatatta aaggtggctc ctgtcagatt cagccaggca      1260
     gggcttctgg attcaggtkc ccaggtcaat tttataacgg acgwgttggc gagaggtttg      1320
     cagttaaaac ggattcgaaa agaaattaat ttgttgggag ttggaaatct agcttatctg      1380
     cgcaccaagt tgtgmaaaca acaacaagtt ctcgcattaa taaatatgaa atggttgttg      1440
     acttcgtcgt tctaaaatct atttcctctt atcacccaga aaaaggagtt tcaattgaat      1500
     ctcttaacat tcctccaaat ctaccgcttg ctgatccagc ttttcacaag ccacaaaacg      1560
     tagatctgct gcttggagca gacgcgtttt ttgatctttt gaaagatggc caaattaaac      1620
     aagaaaatac tctgactttg caaaacattg ttggtgggcg gtgtaaatca aaacaacccc      1680
     aaaggactga agcgtgttct atggtgagca tagttgagga gtctggtcca cttgaaaaac      1740
     gattctggga gttggaacaa gttccaaatg tttcaggtga caaactatat accccagaag      1800
     aaatgctttg tgattgcaag tatccttacc gtttaaatct agcccaacgt gtctcggatc      1860
     atcgtttgaa atggcaagaa ggcgtttttt atcgttagag agacgattaa ctaaaaatcc      1920
     gaacacacag ttaatgttta atcaatttat ggaagagtat ttggctctcg gacatatgac      1980
     tgcaatcgag ggttcaattc cgaaagattc gcattgtttt ataccctacc aatgtgtaga      2040
     acgtccacaa agcacatcta ctaagcttag agtggtattt gatacatctt gcaagactac      2100
     ttcgcaagta tcgcttaatg accttcttat ggtaggacca acaatacagc catgcttata      2160
     ttccactctc cttaggtttc gttgtcgcaa gtacgcactt gttgcagaca taactaaaat      2220
     gtaccgccaa gtggaggttg gcgaggcgca acgaatattt tcaattaatt gtatggagaa      2280
     gagatgctgc cagcscctta aaaacttatc gcctaaatac tgttacgtat ggaacagcaa      2340
     gtgcttcatt tctagcagta agatgcttaa aatatcttag cgagacccat ttgcaatctc      2400
     tcctcaaggt gcaagatgtc ttggcacgga cttctacgtc gatgacctcc tcaccggagc      2460
     ggacacagag caggaaatga ctgttcttcg tcgcgagcta attgagatcc tggaaccagc      2520
     ggkctttgtt ttgacaaaat gggcttcaaa ttgcaaaaca ggtaaacgaa tgcggaaatt      2580
     ttacacggag atcttcaaga tctcaagact cttggattga catggaatcc acagactgaa      2640
     gttttcaagt acggcgttag gagagtatcc acaaatcagg tggttacaaa aagatcaatc      2700
     ttgtccttta tcgccacast ttttgatcct ttgggcttgt tatgcccaat aataaccaga      2760
     tcgaaatatt tctgcaagag gcttggcttt tgagtctgaa ctgggatgac cctgtgcccc      2820
     aagactttga aaagaagtgg aacctagtaa aaaacgacta tgcattcttg gaaaaattgg      2880
     ttattccaag atttgttgga acacgcaaag aagcagtgtg tcaaattcat gggtttgctg      2940
     atgcttctac aagggtggtt gagccaaacg gggcgtcggt gcagttgcta acagcaaaat      3000
     ctagggttgc ccctttaaaa acaaagacgg tgtccagact agagctatgt gcagcgcatt      3060
     cgttggcaaa gctttgggaa tcatcagctg tttggcggca tgtgccaacc aaggaaaatc      3120
     ctgcggattt agtctcgcga ggatgctctg ttgatgagct agatacctca ttttggtaca      3180
     atggtcctag ttttttacag aaggaagccg agtgctggcc aataaattct cattttcagc      3240
     tatcagaaac aggcgcagca ctagaaacta aaaaggcacg cgttgctctc atcgcggccg      3300
     atgttgaact aaamccgatt ttaaatattg tagaaaggtc atcgtcgtat ctgaaagtag      3360
     ttcgcattgc ggcwtatatg tatcgattta tcaaccgaag gaaaaagata tcttggaatt      3420
     caatttgtcc gtcgcggacg agcgtggaac agcgtttctt aaagtagttg aagctattca      3480
     aaagacagca tttgctgaag aaattgtaaa actagaaaaa tccgctaata tccgtgctgg      3540
     aattcaaaaa ttaaatccgt ttctatctgt tgaacagttt ggaacgtcgt catactcttt      3600
     gttgcgagta ggtggtcgtc ttctacatgc ccccattgct cacaacgcta aattcccctt      3660
     gttaatgcct aaaaattgca aatttgtgac cctatacttg agacacttac atagaaccaa      3720
     ctgtcacgcg ggtccacggt cgttggttgg gcttctcaga caagtggttt ggcttataaa      3780
     cgcacgtcgc gagtgcagta ccattgtacg gcagtgcgtt cattgttttc actataaacc      3840
     gaaacttcta tcacagataa tgggtaattt accaagagat cgattgcatg gaaatagacc      3900
     ctttgaagta agcggagtgg atctctttgg gcctgttaaa gtctcacttg gaattcgggg      3960
     aaagcagcca atcaagatgt acatagcagt gtttgtctgc tttgcttcca aggctgtaca      4020
     tttggaaatt gtgaaagatt tgatacattt attttatgcc tatccaggtt tgtgggtcgt      4080
     cgtggtcctg ttgtcaaact ttattgcgac aatgccacga attttgtggg agctgctcga      4140
     atcctgaagg agcttttgga acctttcgac accaacgacc agagcatcat gtcgtatgct      4200
     gcggcccacc gttcaccatc gaattcatcc ctcccagagc aggaggacga gctccatacc      4260
     gtcatagtgg aggtagaagc cgtcctaaat tcgaggccgc tcatcgtaga cagtggcagt      4320
     cccaacgagg gagaggttgt cacgccagct catctgctag taggcacaac gctagcaacg      4380
     ctgccgcccg catccgcgca gccaaaggca gacggcagcc tcacgtactt gcagagatgg      4440
     cagctagtct cagcaatcaa acagcggttt cggagcgact ggtcgcggga ctatcttctg      4500
     agcctacagc agcgagggaa atggaccaaa ggcgtggaca atcttcagat cggaacagtg      4560
     gtggcaatcc acgttccccc agctatggat aataggcgag tcaggtcgtc caggacatga      4620
     tgggaaggtt cgcgtggcta tagtcagaac caaatctggg tatataaacg ctccattcac      4680
     cgccttgcac ctattcctat tagttgaagc atttgtctgt taatgctgtc aacgcggccg      4740
     a                                                                      4741
//
ID   BEL-16_DEl-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-295
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 447-447 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 295 BP; 87 A; 56 C; 57 G; 95 T; 0 other;
     tgttcagtca attcggtggc gatttatttt tgtaaaacaa tgtaacaatt agtacctaag        60
     atctcttgaa gtcgaacttg cgctcttgta ttagaaagag ctttcgctca ctcgcactcg       120
     cgagaaccac tatcgtaact ttaaaactca tttaatggct ctagaagagc ttgaataaat       180
     ttgagtggag cactctcaat ttgaaaacga aggtgtccac aagttttgtt ctcgtctgtc       240
     cgaattatta ttggaaaata aattgccgta tcggcattcg tgatttgcac gaaca            295
//
ID   BEL-16_DTa-I repbase;    DNA;    INV; 4922 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DTa_;
KW   BEL-16_DTa-LTR; BEL-16_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4922
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1593-1593 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4224-4811] - Integrase core
CC   'TAAA' target site duplication
CC   LTRs are 94% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1571..3112
FT                 /product="BEL-16_DTa-I_1p"
FT                 /translation="MSSLTTLIPAQQVKSSTPIWNKIRSLPLADPTFGSPG
FT                 KIDVILGADQLWNIYTGHRREFGIEYPIALHTNFGWVITGSYNDCSEPSTH
FT                 AQVHHAYEDLDSLVRSFMDMEQVHPTKATIDASDPAEKHFLTTHARREDGV
FT                 YIVQYPFKEPIMPLGSTLPQALNRFAALERKFRKFPALKQEYVTFMEDYLK
FT                 RGHMELIPAAEASEDPGRCNYLAHHAVFKPDSTTTRCRVVFDGSGKDSKGH
FT                 SLNSRLHIGPPIQRDLIGVCLRFRQHLYVFCADIEKMFRGILVSDEHTQYQ
FT                 RIVWRKEENATLDHYRLLTVTYGLASSPFLAVRVLKQLANDYVEVYPSAAV
FT                 VLNRDAYVDDIPTGCDQIQDLIALKDELISLLSKAQFNLRKWSSNCYALLK
FT                 SLPKEICEYPLEALEKDSSFRFVKVLGLHWDPKADCIFFKLEIPGITTALT
FT                 KRILLSELAKIYDPLGLLAPTTVFLKILFQDSWLSSVDWNEVLPNDNFSHI
FT                 GNCSPPPTKSHAELLWRR"
FT   CDS           4206..5153
FT                 /product="BEL-16_DTa-I_3p"
FT                 /translation="MADLPEFRVQPARCFLHAGLDYAGPVTIKASTGRTPK
FT                 FGKAWFAIFVCLSTKAIHLELVSDLTTSAFIAAFKRFWSRRGPISDLYSDN
FT                 GTTFHGAKRDLAEMQRIAIAQAHSEEISSFLSSHEINWHFIPPSAPHFGGI
FT                 WETGVRSIKLHLKRVIGSSALTFEEYSTLLIQIEGLLNSRPLCAPSDHSLN
FT                 PLTPSHFLTGQPLTSVPEPSLLDVNINRLQRWRQLQAKVQGFWKRWNLEYL
FT                 STLQARTKWQQDAQNVAVDTLVVLKEPNQPPSRWLLGRVLQIHPGQDQRVR
FT                 VVTVKTAKATYKRPITKIAVLPLN"
XX
SQ   Sequence 4922 BP; 1333 A; 1168 C; 1079 G; 1341 T; 1 other;
     taacaaattt tggtccgttc gagtagccgg ataactgcgt ttgaatttga gtttatttgt        60
     gaataataaa agaaaaaata gccgctgctt ttcgccatga actctttaat gcatcgcacc       120
     attcaacaac gtggtgcctg caaggggcaa ataactcgcg cccttaacag tgcctcggag       180
     ttctcgcagg gatgtgatag tgtggaaaca ttgcaattga agctggatcg tcttgtagcc       240
     accttcaacc actttatgga gctttctgag gatttagtgg catttaacga ggaggaggga       300
     tatgaagacc ctggattgga tacacctgaa tacgaggaca agttctacag agcgcattcc       360
     atttttagta aagccataaa ggagatgggt ggtcaagatc atgagcagga ccagtcgaac       420
     cttttgctat caagtacagt ggaacgtcta tttgagggac aaaaccaact tctggaacaa       480
     attcatacct catctggagc agctaattta aggtttgaga aaattcgaat tccaacattt       540
     tctggcaaat acgaagattg gagccagttt agtgatttgt tcttaagctc ggtagataat       600
     aacgagaagc tctccgagtg ccaaaaattt cattatctga aatcttattt agatggagaa       660
     gccctttcct taattaaaca tattgccgtt tcgaatgata attatcaaga cgcgtgggaa       720
     aaattgcaaa atcgttataa caagaaaacg ctaatcgctc gatcatttat tcagaatttt       780
     ctttcgttgc caaccgctaa caatttgaat atcgccgagt tacgcagggt aattgactct       840
     gccgacgaat gtattcgagg cctacacgcg ctgaactgtg acagccgcga tgtgtggcta       900
     attcatatat tgctatcaaa attaggcccc gaaatcaaac aagcttgggc taacgtagtg       960
     tgtcgtccaa gaagacgtca ccataaatga tttattcctt ttcttttcgc tcattgtgat      1020
     actttggagt cttgtcagat atacacgtat gcaaccctca agaccagagt agacgccgcc      1080
     aagtcgctta tcatgcaagt ggatcaaatc agtcttctcg cgactgtatc tattgtcaag      1140
     gacagcacaa tatatacgca tgtactgcat tcaaagccct ggatgtcgta aaccgccgta      1200
     ctttcgccag ggatactaag ctttgtttta attgcctcag tcgatctcat caagtcaggg      1260
     attgtaattc atcgaacact tgccgtcagt gcaacgctaa gcatcacacg ctagtccacc      1320
     cggaagagtc tagatcgatt ccgttggcct ccgcccatat gtctgcggct gaggttaata      1380
     tagttcctcc gattgatcat gatgctgata taaatactgc tgctgtcggc catcatactg      1440
     tggacagggc caacaatcaa gccctactgc cgactattct ggccaatgta attgacacat      1500
     gtggcaacaa gacctcatgt aggttatcgc tcgatcttca ccttactgtc agaaccacaa      1560
     ctgcctgatt atgagttctc tgaccacctt gattcccgct cagcaggtca agtccagcac      1620
     tcctatctgg aacaagattc gcagcttacc gttagctgac ccgacgtttg gatcaccggg      1680
     aaaaatcgat gttattttgg gcgctgatca actctggaac atatatactg gacatcgccg      1740
     agagtttggt attgaatacc ccattgcact acatactaat tttggttggg ttattacagg      1800
     cagctataat gattgtagcg aaccatctac gcacgcacaa gtccaccacg cttacgaaga      1860
     tttggattcc ttagttcgct ccttcatgga catggagcag gtgcatccga ccaaagcgac      1920
     gatcgacgcc agtgatcctg cagaaaaaca ctttctgaca acgcatgctc gccgggaaga      1980
     tggtgtgtac attgtccagt acccattcaa ggaacccatc atgccacttg gctctacgtt      2040
     gccacaagct ctaaaccgct ttgccgccct agaacggaaa tttcgaaagt tccctgcact      2100
     caagcaagag tatgtaacgt tcatggagga ctacttaaaa agaggacaca tggaactgat      2160
     acctgctgct gaagcgtctg aggatccagg acgctgtaac tatttggcac accacgcagt      2220
     gtttaagccg gatagcacca ccacccgttg ccgagttgta tttgacggct caggaaagga      2280
     ctctaagggt cattcgctta actcacgact gcacataggc ccacctattc aaagggattt      2340
     aattggagta tgtcttcgct ttcgtcagca tctttatgta ttttgcgctg acattgagaa      2400
     gatgtttaga ggtattttgg tatcagacga acacacgcag tatcaacgca tagtttggag      2460
     aaaggaggag aacgctacgc tggatcacta tcgactgctg accgtaacat atggtttagc      2520
     ttcatcgcca ttcctcgccg ttcgagttct taagcagctc gcgaacgact atgtcgaagt      2580
     gtatccgagc gctgctgtcg ttctaaacag agacgcgtac gttgatgata ttcccactgg      2640
     atgtgaccaa attcaggatc ttattgctct caaggatgag ttaatttctc ttctaagcaa      2700
     agctcaattc aaccttcgaa agtggagctc aaactgttac gccctattga agtcgttgcc      2760
     caaggagatt tgtgagtatc cgcttgaagc tttagagaag gacagttcat ttcgatttgt      2820
     taaagtgctg ggattgcatt gggatccaaa agctgactgt attttcttca agctagaaat      2880
     ccccggaatt acaaccgctc ttaccaaacg cattctgctt tcggaactag ccaagatcta      2940
     cgatccgctg ggcttgcttg cacccacaac tgtgttttta aagattctct ttcaagatag      3000
     ctggctgagt tctgtcgatt ggaatgaggt actcccaaac gataattttt ctcatattgg      3060
     gaattgtagt ccgcccccaa ccaaaagtca tgcagaactg ctgtggcgca ggtgatcgtc      3120
     caaacattga gtcctatctg aatcatgtca cagtcgatat tggaaacttg tcgagttcct      3180
     ggaaaacccg ctacactatc aacaccgccc agcttcaagc aatggagctg cacggatttg      3240
     attcagatgc atcgtccctg aggcattatg ctttgccgtc atctatagtc gcgtcgaagt      3300
     catacttaat ggatatgcaa ttctctgtta tttgataacg gtttcgcaaa acaacccgcg      3360
     tggcacctga gcttaagtct tggtctccat tccgcgactg gagcgtgtag ctcagaaacg      3420
     cagcccattt gccactctaa gttgttttcc ctggtcaagc agaatcaatt aactgtatcc      3480
     actatttccc agaatcacam ttgtcggtca gaatcttata gtccgaattg taagtctact      3540
     gcatttaccg gcttaccgtt tgtgaccgta ttgcagaaaa catgaaatgt gcccatgctt      3600
     ttgcttaagg ctacaattat tccagttttg ttagttctta aagttgagac ataaaagcta      3660
     agcaccgaac aacatttgaa aaagaataaa cgccgaccct tttcatagat agaatctaca      3720
     cgtgaaggga agcaatagct ttctaggcaa ttttgctgga aaaatggttt cttaagctaa      3780
     ctttgctgct ttgtagttcg aatacccacc cctgtcgcaa cactggagcg gatactttca      3840
     tagtctacga ctaaggcatt ggatctagga gctcgaaacc tcgtccgcga aaccgtattt      3900
     aattgcagaa cttgcttctt gcaacgacga cgtacgagtt ctcaacttat ggctgatctt      3960
     cccgagtttc gagttcaacc cgcccgctgt tttcttcacg ctggattgga ttatgctgga      4020
     cctgtgacga tcaaagcctc tacaggtcgg acaccaaaat ttggcaaagc ttggtttgcc      4080
     atcttcgttt gtctatcaac aaaggctata caccttgaac tcgtcagcga tttgacaaca      4140
     tccgccttta tagccgcttt caaacgcttt tggtctcgac gagggcccat atcggactta      4200
     tactcggaca acggcacaac ttttcatgga gccaaacgag atttagctga aatgcaacgg      4260
     atcgcaattg cccaagctca tagcgaagag atttcgagct tcttgtcgag tcacgaaatc      4320
     aattggcatt tcatcccgcc ctcagcgccc catttcgggg gtatttggga gactggtgtg      4380
     cgatctataa agctgcatct aaaacgagtt attggcagca gtgcattaac attcgaggaa      4440
     tattcgaccc tgttaattca gatcgaagga cttctgaatt ctcgaccttt gtgtgcaccc      4500
     agcgatcaca gccttaaccc gctaacccct tctcattttc taacaggtca gcctctcact      4560
     tcggtaccag agccatcgct cctggatgta aacatcaaca gactgcagcg ctggagacaa      4620
     ttgcaggcca aggttcaagg gttctggaaa cgctggaact tagagtatct cagtacgctt      4680
     caagctcgca cgaaatggca acaagatgct cagaatgttg ccgtggacac cctggttgtg      4740
     ctgaaggagc cgaatcaacc gccaagcagg tggctgttgg gacgagtcct acaaattcat      4800
     cctggtcagg atcagagggt ccgtgtggtc acagttaaaa ctgccaaagc aacctacaag      4860
     cgccccatta cgaaaattgc tgtgcttcct ttgaactgaa ccgtcgttca ggggggccgg      4920
     ta                                                                     4922
//
ID   BEL-16_DTa-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DTa_;
KW   BEL-16_DTa-I; BEL-16_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-371
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1594-1594 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 371 BP; 114 A; 78 C; 50 G; 127 T; 2 other;
     tgttgagaaa tagatcggtc atttattatt gttttctaat cgcacctagt taaatgctca        60
     tcattgtatt gtttcctaat cgcacctagt taaatgcaca tcattgtntt gcattctaca       120
     taaaagcttt aagctcacac gcatagccga aattgcagtc gatctgcatt agtattggaa       180
     tatcatgcgt ttttttgcat tatctttctg cacgtttttt cggcagtcat atagaagtca       240
     tatagttgaa ttgtacccgc aaccgctcgc taatcgcaaa cccgcttaaa acctattgta       300
     aaaccgctta ttattaataa aaacctcaaa acctatanaa acattaatac agtccacttc       360
     atttataacc a                                                            371
//
ID   BEL-16_DWil-I repbase;    DNA;    INV; 5379 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DWil_;
KW   BEL-16_DWil-LTR; BEL-16_DWil-I.
XX
NM   BEL-16_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5379
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5379
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..5351
FT                 /product="BEL-16_DWil-I_1p"
FT                 /translation="MQTVMQKRGYCKSQITRAYHNANTFIEKTHAVASYDT
FT                 RLQQLQENYLRFLQLTEELHTYKDTADWEDPDVDIDPYEEKHYATYSMLSV
FT                 AREELQVQYARSLNNRFSVTEAREGHVSQTHVNLHYERIKLPTFSGNYEDW
FT                 QHFSDMFVGSIGSDPHLTSCQKFHYLKSYLSGEAFSLIKHIAVTNDNYSEA
FT                 WDRLVQRYNKRHVIIRSFIDSFLNLPTASVLNSGAIRKLADGADEVIRGLR
FT                 ALECENRDPWLIHVLLAKVDNNTRQAWAEHSESEDYTVTIDSFIKFLLXRG
FT                 DTLESSQLSRANHSRRIATTHHVNTETQPLIEPCTLCQHAHPLSRCEQFRA
FT                 LDAVARHAHVRSANLCFNCLSPNHRIATCPSKNTCRVCQRKHNTLIHAAQQ
FT                 TTGREFRDSAVRVHQPESPGSNDESPAIISHHVQTTRGHQIAVTKHSKRVS
FT                 LHTLENIPYAGSQTLLPTILTSVKDARGKTFTCRALLDTGSTVSLATESFV
FT                 QRIGMRRTHAKVPVRGLAANRAGVTRGLVKFRICSCNSDHNIEVETYILST
FT                 LTSALPAQNVDMSSTQWKEILKLPLADPSFGTVGAVDVIFGSDQLWKFCTG
FT                 EQRSFGNNVPIALNTIFGWTLAGPYSTFGENQSLAITHHVHLDLDSQVRSF
FT                 MEMDSIPSKTSTLEIFDPTEQHFINTHTRSQTGTYVVEYPFKDPMPPIGET
FT                 LPQAVSRLQSLERKFSRDPSLKREYIAFMDEYLKSGHMELLNTQQIDEQPD
FT                 GCFYLPHHAVLKPESTTTKCRVVFDGSGKDSSGVSLNERLHIGPPIQRDLF
FT                 GVCLRFRQHRYVCCSDIEKMFRKIEVAPHHTNYQRIIWRSSTXDPMQHYRL
FT                 RTVTYGLAPSPFLAVRVLKQLAIDYEAKYPLAARVLARDAYVDDIPTGCNS
FT                 VGELMKLKXQLISLLDEGNFKLRKWSSNSWSFLKSIPKEDCLHGHASIEDN
FT                 VKILGIPWNPGRDEFLVNTPMIATKQAPSKRALLSDLSKVFDPLGFVAPTT
FT                 VLLKLIFQECWFSAISWDDPIPETLRRRWQAIIKELPLLSHCRISRYIAAS
FT                 SPHIELCGFADASTQAYGAVIYSRVRTTNGYRSRLVAAKTRVAPLKPISIP
FT                 RLELNAALLLSRLLKLVTESLTIPISSSHCWTDSEIVLHWLSSPPRRWNTY
FT                 VCHRVAEIVEDYPRRCWNHVRSEENPADCASRGLSPSQLLNHELWWNGPSW
FT                 ITKPQSEWPLSEPHGQSFTDMATEERRQPITVLHGMLEDSIHELLINKLSS
FT                 WSRLLRVTSYCYRFIERLRCKGAHSDKTFLTSVELQSARCLLLQHAQRKSF
FT                 SKDYEKLNKQEPLSIKSRLIRYSPFLDERGIVRVGGRIERSSLHYNVKHPI
FT                 LLPKESPISLLLIRHIHQTHFHTGVDATFTILRQQYWILGARNLVRRVVFQ
FT                 CKLCFLQRRATHTQLMGNLPLPRVQATPCFQHTGLDYAGPIAIKENKGRTP
FT                 RIGKAWFAIFVCLATKAMHLEVVSDLTTNAFIAAFKRFISRRTRPTDLYSD
FT                 NGTTFHGSRRALDEMRRLAIDHMKDKELASFAASEGLTWHFIPPSAPHFGG
FT                 IWESGVRSVKLHLRRVIGANALTFEELSTVLAQIEAVLNSRPLCANGDSSL
FT                 DPLTPAHFLVGSPYTALPEPCYLDMTFNRVERWNQLQAMVQGFWKRWYMEY
FT                 LTSLQDRTKWLSRENNLCVGTLVVLKEPHLPPTKWILGRVSAVHPGDDGLI
FT                 RVVTVTTAHGSYKRPITKVAALPMC"
XX
SQ   Sequence 5379 BP; 1481 A; 1318 C; 1206 G; 1369 T; 5 other;
     tataaaattt ggtccttcga gccggatmct agctgctgat ttatttcaat gttttgcaag        60
     ttgtgtaaag ttagacggta ctcagttgga agagaccgtg tctaacctca ttcgcgatgc       120
     agacagttat gcaaaaacgt ggttactgca aaagccaaat cacgcgggct taccacaatg       180
     caaatacatt catcgagaaa acccacgcag tggcaagtta tgacacacga ttgcaacaac       240
     tgcaagaaaa ctaccttcgg tttctacaac tcacagagga gttgcacaca tataaagaca       300
     ctgcggactg ggaagatccg gacgtggaca ttgatccata tgaggaaaag cactacgcaa       360
     cttactcgat gttgagtgtt gcgcgggagg agctgcaagt gcaatacgcc agatcgctca       420
     acaaccgttt ttctgtaaca gaggcacgtg aaggtcacgt atcacaaacc cacgtgaact       480
     tgcactatga acggatcaaa ctaccaacat tttcgggcaa ttatgaggac tggcaacatt       540
     tttcggatat gtttgttggt tctatcggca gcgatccgca tctcaccagt tgtcagaagt       600
     ttcactatct gaaatcttat ttgtctggcg aagcgttttc gttgattaaa cacattgccg       660
     tgaccaacga taactatagt gaggcttggg acaggctggt ccaacgttac aataagagac       720
     atgtaatcat tcgttccttc attgacagtt ttctaaatct cccaacggca tctgtactca       780
     actctggcgc gattcgcaag ctggctgacg gagccgatga agtaattcgc ggactaagag       840
     cattagagtg tgagaatcga gatccctggt taattcatgt gctactggca aaggtggaca       900
     acaacactcg gcaagcatgg gcagagcaca gtgaatctga ggattacact gtaacgatcg       960
     acagttttat caaatttctg ctcwcccgag gtgatacgtt ggaatcgagc caactttcac      1020
     gagcgaatca cagccgacga atagctacta ctcatcacgt caacacggaa acccagccat      1080
     tgatcgagcc atgcaccctg tgccagcacg ctcatccgct atcaagatgt gaacaattca      1140
     gagcacttga tgcagttgca cgacacgcac acgtgaggag tgccaacttg tgcttcaact      1200
     gtttaagccc aaaccacagg attgcaacct gtccttcaaa gaatacatgt cgagtatgtc      1260
     aaagaaagca taacaccctg attcatgcag cgcagcagac gactggccgt gaattcagag      1320
     atagcgcggt gcgagttcat cagcctgaga gcccaggatc taacgatgaa tccccggcta      1380
     ttattagtca tcatgttcaa actacacgag gtcatcaaat agcagttaca aagcacagca      1440
     agagagtttc tcttcacacc ctggagaata ttccgtatgc aggttcgcaa acgcttttgc      1500
     caaccattct tacatcagtg aaagacgctc ggggcaagac cttcacttgc cgagctctac      1560
     ttgacactgg gtctacagtc tcattggcaa cggaatcatt tgtccagcgg attgggatgc      1620
     gacgcaccca tgcaaaagtt ccagttcgtg gtctcgcggc taacagagcc ggcgtcacca      1680
     gaggactcgt aaagtttcga atctgctctt gcaattcgga tcacaacatt gaggtcgaga      1740
     cgtacatcct cagcaccctt acmtcagctc tcccagctca aaacgtggac atgagctcaa      1800
     cgcaatggaa ggaaattttg aagttaccct tagctgatcc atctttcggc acagttggtg      1860
     cggtagatgt catttttgga tctgatcagc tctggaaatt ctgtactgga gagcaaagat      1920
     cttttggtaa caacgttcct atcgcactaa atacaatttt tggttggact cttgcaggtc      1980
     catatagtac attcggggaa aaccaatcac tggcaatcac tcatcatgtt cacctggacc      2040
     tcgattcgca ggtgcgatcg ttcatggaga tggatagcat tccatcaaaa acatcgacat      2100
     tggagatatt tgatccgact gagcaacact ttatcaacac tcacacccgt tcccaaactg      2160
     gcacgtatgt agtagaatac ccattcaaag acccgatgcc accaattggc gaaacccttc      2220
     cacaagctgt tagccgattg cagtcactag aacgcaagtt tagtcgcgac ccaagtctca      2280
     agagagagta tatcgctttc atggacgagt atctgaagag cggtcatatg gaattactca      2340
     acacacagca gatcgacgag cagcccgacg gttgtttcta tctgccgcat cacgccgtct      2400
     tgaaaccgga aagcaccact accaaatgcc gagtggtgtt tgatggatct ggaaaagata      2460
     gtagcggagt gtcactcaat gagcgtcttc acattgggcc tcccattcaa cgagatctat      2520
     ttggtgtctg ccttcgattc agacaacatc gttatgtatg ctgttcggat atagaaaaga      2580
     tgttccgcaa aatagaggtt gctccccatc atacaaacta tcaacggatc atctggcgca      2640
     gttccacaat kgaccctatg cagcattatc gattgcgtac tgtcacctac ggattggcgc      2700
     cttcaccctt cttggctgta cgggttttga aacaattggc catagactat gaagcgaaat      2760
     atccactagc cgcgcgagtc ctagcgcgcg atgcatacgt ggatgacatt ccaactggat      2820
     gcaattcagt tggcgaactt atgaaattaa aagakcaact gatttcttta ttagatgaag      2880
     gaaatttcaa gttgagaaaa tggagttcga acagctggag tttcttgaag tcgataccaa      2940
     aagaagattg tttacatgga catgcgtcga tcgaggacaa cgttaaaata ttgggcattc      3000
     cttggaatcc tggtcgagat gagttcttag ttaatacacc gatgattgca accaaacagg      3060
     cccctagcaa acgggcgcta ttatcggatc tgtcaaaagt cttcgaccca ctgggctttg      3120
     ttgcgcctac cactgttttg ttaaagctaa tattccaaga atgctggttc agcgctatta      3180
     gctgggatga cccaataccg gaaactcttc gaaggcgatg gcaagcaatc ataaaggaat      3240
     tacccctgct atctcactgc cgaatttcac gatacatagc cgcttcatcg ccgcacattg      3300
     aactttgtgg tttcgcggat gcatccactc aagcctatgg cgctgtcatt tatagtcgcg      3360
     ttcgtacaac gaatggttac cggagtcggt tggtggctgc caagacccga gtagccccgc      3420
     ttaagcctat ctctattccc cgtcttgaac tcaacgccgc tcttctactt agccgattac      3480
     ttaaacttgt aacagaatct ctaactatac ccatttccag ctcacattgc tggactgact      3540
     cggagatagt cttgcactgg ttatcatcgc caccccgtcg ttggaatacc tatgtttgtc      3600
     atagagttgc tgaaattgtg gaggactacc cacgtcgctg ctggaaccat gttcgctctg      3660
     aagagaatcc cgccgactgc gcatcacgag gtctaagtcc atctcagttg ttgaatcatg      3720
     agttatggtg gaacggaccc tcttggatta ccaaaccaca atcggaatgg ccactatctg      3780
     aaccacacgg ccaaagcttt actgacatgg cgactgagga acgacgccag ccaattactg      3840
     tgcttcatgg aatgcttgag gacagcattc acgagttatt aatcaacaag ttatcgtcct      3900
     ggagccgtct cttaagggta accagctact gttaccgatt cattgagcga cttaggtgca      3960
     aaggtgcaca ctccgataaa acattcctta catctgttga gttacaatca gcacgatgcc      4020
     tactgctgca acacgcacaa cgcaagagct tttccaagga ctatgaaaag cttaataaac      4080
     aagagccgtt atcaattaaa tctcgattga tccggtacag cccattcctt gacgagagag      4140
     gaattgtacg agtcggaggc cgaatcgaac gatcatccct acactacaat gtaaagcatc      4200
     ccattctact gcccaaggag tcaccgatca gcttgttatt aattcgacac attcatcaaa      4260
     cacattttca tactggagtc gatgccacat tcactattct tcggcaacaa tattggattt      4320
     tgggtgcacg taatctagtg cgccgagtgg tttttcaatg caagctctgc ttcttgcaac      4380
     gacgagcaac tcatactcag ctaatgggta acttgcctct acctagagtt caagcaactc      4440
     cgtgtttcca gcatactggc ctagactatg ctggtccaat tgcaatcaag gagaataagg      4500
     gtcgaacacc tcgtattgga aaggcttggt ttgctatatt tgtctgtctc gcaacaaagg      4560
     caatgcactt ggaggtcgta agtgacttaa caaccaacgc tttcattgca gcatttaaac      4620
     gatttatttc tcgccgaacg agacccactg atctctactc ggacaatggt accacctttc      4680
     acggaagtag acgtgcgcta gacgagatga gacgtttggc catcgatcac atgaaagata      4740
     aggaacttgc tagttttgcc gcgagtgaag gcctcacatg gcatttcata ccgccgtcag      4800
     caccacactt tggcggcata tgggaatctg gagtgcgatc cgtgaaacta catctccgtc      4860
     gggttatcgg cgctaacgca ctgacctttg aggagttgtc tactgtgtta gcgcaaattg      4920
     aagctgtatt aaactcaaga ccactgtgcg caaacggtga cagctctctg gaccctctca      4980
     cacctgctca ttttcttgtt gggtcacctt acactgcgct acctgagccc tgttatttgg      5040
     acatgacatt caaccgtgtg gagagatgga atcaacttca agctatggta caggggttct      5100
     ggaagcgctg gtatatggaa tatcttacat cattgcaaga ccgaaccaaa tggttatcaa      5160
     gagagaataa cctttgtgtt ggaactcttg tggtgctcaa ggagccacat cttccaccca      5220
     ccaaatggat attgggacga gtctctgcgg tccatcctgg agacgatgga ttgattcggg      5280
     tagttactgt aactactgcc catgggtctt acaaacgccc tatcaccaaa gtagcggccc      5340
     tccctatgtg ctgaactaat agttcagggg gcgccggta                             5379
//
ID   BEL-16_DWil-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_DWil-LTR.
XX
NM   BEL-17_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-288
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 288 BP; 97 A; 40 C; 54 G; 97 T; 0 other;
     tgtttctgaa cgaaatgcat tattattgtt agcatataag aaatttgact tgtattccat        60
     attgttagtg cagtaagata attatcgaat tgcagtgtca tattaccatg aaattgttat       120
     cgagttcgct ggtatcgata tgtaatcgat atcgggtaga aagcttagtt tagaaaaacc       180
     attgaattga ccggttgtaa ctttatacaa attgcaaata tattgaacaa taaatcaaat       240
     aggcggtatc gccttaaaca gtctaactag gcagttggtt tccgaaca                    288
//
ID   BEL-16_MoPha-I repbase;    DNA;    INV; 6183 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6183
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1142-1142 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           646..5835
FT                 /product="BEL-16_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MATDFDPARAKKRRSIVKSACTRIKTYVDSITAVTPR
FT                 VLSQLEERKGKLEQYWTEYNDVQTELEMYDDSEQSDRIAFEDAFYELSSRI
FT                 RDRLRPSSASRNVTAPSPTPSNVSDAPSSSFNVRLPKLDLPKFSGKYDEWV
FT                 PFCNAFRSAIHSNPSLSNVHKLQYLRAATTGDAHKVICSLEISDENYPVAW
FT                 NLLNERYDNKRVIVQSHLKALIELPIMKKESAAELRQIADGAARHVQALKA
FT                 LKRPTDNSDDLLVYLLSAKLDPNTTRDWQKSLANDKLPTFQEFSSFLVQQC
FT                 QVLESTQRSSGAGARNATSRSQSDSKQKTTCNAAVQSKCNYCQAGHSIYQC
FT                 KKFSALSVQQRIENARSRKLCLNCLRPADHATRQCPSGSCRVCSRKHNTLL
FT                 HLQGSASDQAKVEDETNQVSNPIEATASNSTNVVATHSYRAGSSDCVMLST
FT                 ALVIAEGNNDLRRSCRVLLDSGSQTSFVTREFVRSLGLTPRSTNVSISGIG
FT                 GAMTCSKQAVQITLRSRLNSSSLTVDCIVADRITDDLPSFTIKRSAFDLPR
FT                 NLPLADPNFNVSSGIDVLIGAEAFWSLLCVGQIRASNRHPLLQKTRLGWIL
FT                 AGKLNAPPPPTRHVRALHSAVSNSTLHQQLAKLWHLEDISNDSQALTSQEK
FT                 ICENHFASTVTRDAQGRYIVQLPFKQELVPELGHSRDIALKRFFSLERRFA
FT                 RQPTLRARYSEFMQEYLALGHMRPIREEPTSTVNAYYLPHHCVVKEDAKGT
FT                 KLRVVFDGSCKTETGLSLNDCLLTGPVVQNDLSSILLRFRTFKYVLVADII
FT                 KMYRQVLVHQDHTRFQRILWRQDKSAELRTFELLTVTYGTASASYLATRCL
FT                 THLADHYSSEFPVGSLRLRRDFYVDDLLTGADTKSEALTIRDQIILLLRQG
FT                 CMELSKWGSNCAELLENVNDLGERLVSFDKESNFLILGILWDREEDTFHFS
FT                 FTDSQTPSTISKRSILSEVSSLFDPLGLIGPVIVVAKVLLQELWQLGLDWD
FT                 ESIPQDLHAKWIQIKTQLPDLSALQIPRRVKYHADPNRIQVHGYCDASQLA
FT                 YGACIYVRSQIDTDSFRSQLLCSRSRVAPLKALSLPRLELSAALLLAQLVD
FT                 KVKSALQLPHVKILLWSDSTVTLNWISSPSRRWSTFVANRVGEIQRITEPM
FT                 SWRHVASPDNPADALSRGLFPKDLIHSDLWWHGPDYLRQPEAQWPCGKFNR
FT                 LDNVPEQRKSALAMVIRTDFSIINDLIARLSSLNKICRVIAYCLRFSKPAL
FT                 NRPSTAETSPEEVLQALHVLCKLVQQQAFTTEYHALSKSQDIGASSNLNCL
FT                 SPFMDDHGLMRVGGRLKNSSLLPDACHQIVLPRNHLLTKRIIEFEHVRNHH
FT                 AGLQATMAFIRQRFWPLSLRAITRKVLHSCVTCFKAKPAFSEALMGCLPAP
FT                 RVTMSRPFTHCGVDYAGPVNLKEGARRNARCHKAYVACFVCFATKAVHLEL
FT                 VSDLTTDAFISALRRLISRRGRPNRIYSDNATTFVGASRQMKEFYDSLRTN
FT                 ATQTAIERFLRDQQISWSFIPPNAPHFGGLWEAAVKSAKHHLARIVGGHNL
FT                 TFEEMLTILCEIEAILNSRPITALSSDPNDMSYLSPGHFLIGSPLNSFPYP
FT                 DLSDVNTNRLSRWEVIQQMRQHFWSRWSAEYLPSLQPRLKWRREKGPQLEV
FT                 GQLVLLKQPGLHPLQWMTGRVEQIHPGTDGIARSATVRTAKTSYVRPLSRL
FT                 AIIPTQATNQ"
XX
SQ   Sequence 6183 BP; 1554 A; 1637 C; 1411 G; 1581 T; 0 other;
     aattggtcct tcgagccgga tactgtccga ctatcaagca cgcggacatt tccggcacag        60
     cagcatcact gcaactgtct actgcccgaa cattctgccg tatcatttac gcagcggctg       120
     ccgagccttc tcgaaaggca tcttccaccg atacctggtc agcgtctttt ccaagttttg       180
     ccgcaccaac gcgcctggaa atcgctcaag gtatctcaag gaaccttctc gaagcatcgg       240
     tccagccgcc atattgcgtt acggcacgca cgctcagcaa cgaggaatcg tctcgaagcg       300
     tcggtccaga cgccacattg cattgcgccg catgcgctca gcaacaagga cccgcagcga       360
     gatttcgtcc cagccgtcat actgcgttac gcatcacgtg ctcgggctca aggacccgca       420
     tcgaaccgcc atattgcatc cacgcaacac gtgatcggca acgaggatcc gcatcgacgc       480
     gccaggtcat ccgccatctt gcgtccccgg tcttcaaccc acgtgtttct gcacgcgcct       540
     taaggaatat tcatcgaaga tacacaagta aggaaagctt ttcaatttgc cgatcaaaaa       600
     cgtttcttaa tctgttcgtt ggatattgtt tactcgagtc ccgcgatggc aaccgatttt       660
     gatcccgctc gggctaaaaa acgtcgctct attgtaaagt cagcatgcac gcggataaaa       720
     acgtacgtag actctattac cgcggtcacc ccgagagtgc tctcacaact cgaagaacgc       780
     aagggaaagt tagaacaata ctggactgaa tacaatgatg tgcaaacgga gttagaaatg       840
     tatgatgact ccgagcagag tgatagaatc gcgttcgaag atgccttcta tgaactgtcg       900
     tccaggattc gcgaccggtt aaggccttcg tcggcatcgc gcaacgtgac tgccccctcc       960
     cctacgccgt caaacgtgtc tgacgcgcct tcgtcttcat tcaatgttcg tctgcccaag      1020
     ctcgatctgc caaaattttc gggcaaatac gatgagtggg ttcccttctg caatgctttt      1080
     cgatcagcta ttcactcgaa tccgtctctg agtaatgtac acaaactgca atacttaaga      1140
     gccgcgacca ccggtgacgc gcataaggtt atttgttctc tcgagatctc ggacgaaaac      1200
     tatccggtcg cgtggaattt attgaacgaa cgctatgaca ataagcgcgt tattgtacag      1260
     agtcacctca aagctctaat tgagctaccc attatgaaga aagaaagcgc cgccgagctc      1320
     cggcaaatcg ccgacggtgc cgcgcgacac gttcaagctt taaaggcatt aaagcgtccg      1380
     acagacaatt ccgacgactt gctcgtttat ttgcttagtg caaaacttga cccgaatacc      1440
     acgcgcgatt ggcaaaaatc tctcgcaaac gataaattgc ccacatttca agagttctcg      1500
     agtttcttgg tacagcaatg tcaggttctt gaatctactc aaagatcttc tggtgccggc      1560
     gcgcggaacg caacgtcgcg ctcgcaatcc gacagtaagc agaaaactac atgtaacgcg      1620
     gccgtgcaat ctaaatgtaa ttattgtcaa gctggccatt ccatttatca atgcaaaaaa      1680
     ttctcagcgc tttcggttca gcagcgaata gaaaatgctc ggtcgcgcaa actgtgcctc      1740
     aattgcctgc gcccggcgga tcacgccacc aggcagtgtc cgtccggaag ttgcagggtg      1800
     tgctctcgta agcacaacac gttgctacac cttcaaggct ctgcctcgga tcaagccaag      1860
     gtagaggacg aaacgaacca ggtgtctaac ccgatcgagg ccaccgcatc taattcaact      1920
     aacgttgttg ctactcactc ctaccgggcc ggaagttccg attgcgtcat gctgtcaacc      1980
     gcgctcgtga ttgccgaggg aaacaacgat ttgcggcgct cctgccgagt gcttctggat      2040
     tctggatcac aaaccagttt cgtcactaga gaattcgtga ggtctctagg tctcactccg      2100
     cgctccacaa acgtttctat atccggtata ggcggggcta tgacgtgttc caagcaagcg      2160
     gtgcaaatta cgttacgatc cagattgaat tcttcctctc tcactgtcga ttgcatcgta      2220
     gccgatcgta taactgatga cttgccgagc tttactatta agcgttccgc ctttgatctc      2280
     ccgcgtaatc ttccgctggc tgatcccaat tttaatgtct catcaggaat tgacgtcttg      2340
     atcggtgctg aggctttctg gagccttctc tgcgtagggc aaatcagggc atcaaacaga      2400
     catcccctac tgcaaaagac aagattaggc tggatcctag ccggtaaatt aaatgcgccg      2460
     cctcctccga cgaggcatgt cagagctctc cactccgctg ttagcaattc cacactacat      2520
     cagcaacttg ccaaattatg gcacttagag gacatctcta acgactctca agctcttact      2580
     tctcaagaaa agatttgcga gaatcacttc gcaagtacag tgaccagaga cgctcaaggc      2640
     cgatacattg tacagctccc attcaagcag gagttggttc ctgaattagg gcattccaga      2700
     gatatcgcct tgaaaaggtt cttctcctta gaaagacgtt ttgctcgtca acctaccttg      2760
     cgggcgaggt attcagaatt catgcaagag tacctcgcgc taggtcacat gcgtccgatc      2820
     cgcgaagagc caacaagcac ggtcaacgcc tattaccttc ctcaccactg tgtggtaaag      2880
     gaggacgcga agggcactaa gctcagagtc gtctttgacg gatcatgcaa gactgaaacc      2940
     ggactgtcac taaacgattg cttgctaaca ggaccggtcg ttcaaaatga tctttcctct      3000
     attctcttgc gatttcgcac tttcaaatac gtcctagttg ccgatataat aaaaatgtat      3060
     cgccaggttc tagtacatca agaccatacg cgattccaac gaatcttgtg gcgtcaggat      3120
     aaaagcgcgg aacttcgaac tttcgaatta cttactgtta cctatggtac cgcatctgcc      3180
     tcgtacctag ctacgcgatg ccttactcat ctggctgatc attattctag cgaatttccc      3240
     gttggctctt tgcgtctaag gcgcgatttc tatgttgacg acctgcttac cggggctgac      3300
     actaagtccg aagcattaac tattcgggat caaattattt tgttgttgag acaaggatgc      3360
     atggaactga gtaagtgggg atctaactgc gccgagcttt tagagaacgt caatgacctc      3420
     ggcgaaagac ttgtgtcctt cgataaggag agcaactttc tcatattggg tatcttatgg      3480
     gacagagaag aagatacgtt tcatttctca ttcacggatt cgcaaacccc cagcactata      3540
     tcaaaacggt ctatattgtc agaggtgtca agcctatttg accctttagg attaattggt      3600
     cccgtaatcg tggtcgcaaa ggtactgctg caggaattgt ggcaattggg tctggactgg      3660
     gatgagtcca ttccccagga cctccacgcc aaatggattc aaattaaaac acagttgcca      3720
     gatttgagcg cattacaaat ccctcgtcgc gttaaatatc atgctgatcc caatcgcatc      3780
     caggttcatg gctattgcga cgcgagtcaa ctcgcttatg gtgcctgtat atatgttcgc      3840
     agtcaaattg atacagacag cttccgctcg cagcttctat gctcgagatc tcgagttgcg      3900
     cccctcaagg cgctttcctt gccacgcctc gaactctcgg cggccttgct tctggctcaa      3960
     ctcgtggaca aggttaagtc cgcgctacaa ctgcctcacg taaaaatatt attatggtca      4020
     gattcgaccg tgacgctgaa ctggatatcg tctccgtctc gccgatggtc cacattcgtt      4080
     gccaatcgag tcggggaaat ccagcgcata accgagccaa tgagctggcg gcatgtcgcg      4140
     tcgcccgaca atcccgcgga cgccttgtcg agaggcctgt ttccgaaaga tttaattcac      4200
     tctgatctgt ggtggcatgg cccggactat ttgcggcagc ctgaggctca gtggccctgt      4260
     ggcaagttta atcgtctaga taacgtccct gaacaaagga aatctgcact tgcgatggtc      4320
     attcgcacgg acttcagcat cataaacgat ttgattgcta gattgtctag tctaaacaaa      4380
     atatgtcgcg tcatagctta ttgtctcaga ttctctaaac ccgccttaaa tagaccctct      4440
     accgcggaga catccccgga ggaggttctc caagctctac atgttttatg caagttggtt      4500
     caacaacaag cattcactac cgagtatcac gcactaagca aatctcaaga cattggtgcc      4560
     tcgagcaact taaactgttt gtctcctttc atggacgatc acggcctgat gagggtaggg      4620
     gggagattga aaaattcctc gctcttacca gacgcgtgtc atcaaatagt ccttccgcgg      4680
     aaccatctac taacaaaacg tataattgaa ttcgagcacg ttcgcaacca tcacgccggc      4740
     ttacaagcta ctatggcttt tatcaggcag cgattttggc ctctctcttt gagagctata      4800
     acccgcaagg tcttacacag ttgcgttact tgcttcaagg ctaaacccgc gttttcggag      4860
     gccttaatgg gttgcctgcc agctccaaga gtcacgatgt ctcgaccctt cacgcattgc      4920
     ggagtggact acgccggtcc cgtgaacctt aaagagggtg cgcgtcgcaa tgcgcgatgt      4980
     cataaagcat acgtggcctg ctttgtgtgc tttgctacca aggcggtgca tctggagctg      5040
     gtcagtgacc tgaccactga tgcctttatc tccgctctta ggagactcat atcccgcaga      5100
     gggaggccta atcgcatcta ttcggacaac gctactacct tcgtaggggc aagccggcaa      5160
     atgaaagaat tttacgactc attacgaaca aacgctacgc aaacggccat agaacgattc      5220
     ttgcgcgacc agcaaatctc ttggagtttc atacctccta acgctccgca ttttggcggc      5280
     ctttgggagg cggcagttaa gtccgcaaaa catcatcttg cgcggattgt cggagggcat      5340
     aatttgactt tcgaagaaat gctaactatc ctttgtgaaa tcgaggcaat attaaactcg      5400
     cgtcccataa ccgcgttgag ctccgacccg aacgatatgt catatctaag cccggggcac      5460
     tttttgatcg gctctcctct gaacagcttt ccttaccctg acctaagcga tgtaaacaca      5520
     aacagactct cacgatggga ggttatacaa caaatgcgcc agcatttttg gtccagatgg      5580
     agcgccgaat atcttccttc tctccaaccg cgcctgaaat ggagacggga gaagggacct      5640
     cagctagaag tcggtcagct tgtcctatta aagcaaccgg gcctccaccc cttgcaatgg      5700
     atgaccggac gagtggagca aatacaccct ggcacagatg gcatagcgcg ctctgctact      5760
     gtcaggactg ctaaaacgtc atatgtcaga cctctttcca ggttagcgat aataccaacg      5820
     caagcgacga atcagtaaac cgtgagtttg gttgacttct agctcgttta atgttaatct      5880
     aagttactat gttcctatta tgtttaagat gtaactccat gatccgcgtt catgctcatt      5940
     ttagtttata atgtttatta gcgttaattt tacgataagt atttgtcctg taagtttaca      6000
     attataagat ttaagtaatg caccttagtt tcattataaa cgcttctatt gtttcaagtt      6060
     gcagtggatt gaccggctaa ggctctaggc ctgttagagc gtcattctct tctggataca      6120
     ttgtaaccac ctgcgacttc taacttgggc attgaagggc agtcccttca aggcgggcga      6180
     ctt                                                                    6183
//
ID   BEL-16_MoPha-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-439
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1082-1082 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 439 BP; 102 A; 117 C; 103 G; 117 T; 0 other;
     tgttgtgtcc ttaataattt tgcaaggata attgtcagtc gcgatttcgc tggagcccta        60
     gctagcattc gggcctggtg ccccctctta cttccttctt ctggctcccc ggtctgcgca       120
     agtacccccc tctccgacct agccggctgc cggcgctctc gtgctccctc ctctttagtg       180
     tgagttcggt cccagcgccc gtaagatctt tcaaggcgtt cggcgacata tttatacgac       240
     agttgcagtg cgtaattaag tgcgtaagga aaattgtatc aagaggttga agtgtgattt       300
     aaataaagga gtaaatttaa ctaaagaata ctgaatattc tgaccgccta gccccccgag       360
     gagacttccg gaaaggcacg tgcggagagt tcgcgatcaa ttcattcgtg aagctcgcat       420
     acccacacaa tacgcaaca                                                    439
//
ID   BEL-16_SiCu-I repbase;    DNA;    INV; 5790 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5790
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4990-4990 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..5789
FT                 /product="BEL-16_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MENVSGGVQVSGVSPSGSQVGVGGTASPRGSVSTSVE
FT                 TFVTSSPVVTSEMFVPVSLNRRGAGGSVAASSHRSRVASSRVNRALEKLRL
FT                 EEQALETRIKVNEDLLRLRDLQRQRMDLEDELDGVESLSLSDEAESRTQEW
FT                 VESVSVKNQSPPPPYDDHQKRLQEKEEEERRRLESWHDPRQRPTLIQHNED
FT                 VKPTRPPPPLYPINEPMPHHSRREPPPQQDPISQLTEALKAVITQPQQQME
FT                 RFMACQTLGRDLPQFSGNVEEWPTFISYYRTSTAECRISNSQNLIRLQKCL
FT                 KGEAREAVNPLLVASSNVEEIIRVLEKHYGQPNTIIRTLMKKVKETPAATE
FT                 GNPDSLVKLGGVVRNMVQTVTSLGKVNHLENPQLLEEIVDKLPNGLRLEWA
FT                 TYMVLLRPAEADLRDFSCWLEKITDAALLLNRSVPSSEVTDKGGKKHKAKG
FT                 ASSKPETAMTVEEKAKQQKCGFCEKPNHKTEDCRGLLKLSPTDRNDWVKKK
FT                 GCCFSCLRMGHAFRKCRKRQECGEDGCTRQHHRVLHCNSVEERESPKKKKT
FT                 SLWSDDSDDDDGKKTTWNPFERKSKTNEESNGNATSSDPSVYLQIVPVVLY
FT                 GPKGQQAYEYAFCDNGSTATMIDKSLAVQLGLEGRTDPLTLRWLDGTTIDD
FT                 DQSRRVTVGIRGKGEKKSYLVENVRTVHNLTLRMQXVSMKKLKEKWRHLQQ
FT                 VGIPEMKNVRPRILIGSDNVDLIISREVREGPPNAPVASRNKLGWSIIGKN
FT                 KMMKGRVDTNFIFCAAEMSESDRELHELVKSSFSLEAIGINVNSDNLKSKQ
FT                 DARAEEMMTEYTKRVGRKFEVPLLWKEDNPLLPNNYRTAQKRLQQIEKKMD
FT                 RDPAFAEEYCKKVQYYLDAGYARKLTQEETEMTTDKTWFLPHFFAYHPNKP
FT                 GKPRFVFDAAAEHNGVSLNKKLVTGPDILKSLPGVIMQFGENRVAFTADIK
FT                 EMFHQVQMREDDQQAQRFLWRGMERTRPPEQYVMKVMTFGSTCSPYAAQYV
FT                 KNLNALEFXDEYPAAVNAIINHHYVDDLAHGADNEDEALKMIKEIIYVHQQ
FT                 GGFDIVKWSCSSRAVLEKIPEELRGSESKKLEMKGELPMERVLGLIWDPNE
FT                 DCFQFATNFNKVDKDIITGERMPTKREVLKTVMSVFDPLGFISHYVIKAKI
FT                 LYQQVWNSKVDWDETIQEAQQKLWKKWISQLPHVKDLKIPRSYFGNGTKKK
FT                 CELHLFNDSSSEAYVSIAYLRWKEDKTYGVKMICAKARVVPLKPQSIPRLE
FT                 LQAALMGVRLAQFIKDELNLEILSTTYWTDAKTVILWLQSDVNRYKPYVAH
FT                 RVGEILEKSNVLDWRWLPTKLNVADEGTRSSPDVELVYDSRWFQGPEFLYS
FT                 PKEEWDFGKPQMKEDPVEMEVKKEFCGYALPGKALQHLPDVTRFSSWTRLI
FT                 RTTAWVRRFIIKKFKLCGQPIPEELTVKELVLAQKQWWRCVQKTCFPYEFA
FT                 ALRDGKPLPKESKIVQLSPFLDEEGIMRAASRLIHSPEMKISQKQPVILDP
FT                 NHAYTKLLIKQYHLWAAHQGQEYVINELRQRYWIPRVRVAVKSIWNSCLEC
FT                 SHRKAKPVVAEMAPLPEFRVTKPARAFTVCGLDYFGPVNVTKFRRREKKWV
FT                 ALFTCMHTRAVHLELVDSLSTDSVIMAMIRMASVRGWPKTFHSDNGTNFRG
FT                 ASVELNKSLKELDQKKIMAELALKEVEWKFIPPSAPHFGGTWERLVRSVKK
FT                 VLGVLLKEQAPKEELLRTLLAEAANIVNSRPLTYVPNDIEDPXVLTPNCFL
FT                 FGTTSGAPVLAKVDEKDMCLRKQWKATQRMADCFWRRWVKEYLPTLTKRTK
FT                 WMRSSRPVQKGDVVVIVDDNAPRNVWLKGIVVETHPGGGVTRVVDVKTKNG
FT                 TYRRPVVKLCVLEGINQEAVSERGETAEGS"
XX
SQ   Sequence 5790 BP; 1810 A; 1226 C; 1563 G; 1181 T; 10 other;
     taaggtggtg ccgaaacccg ggacactgtt aattaattag tgaatttaaa agttgttaac        60
     cgcagttacg taaaagtaaa atggaaaacg taagcggagg agtacaagtg agtggtgtga       120
     gtccaagtgg aagtcaagta ggagttggag gaacagccag cccaagagga agtgtgtcca       180
     cgtcagtcga aactttcgtc acatcatccc cagtggtcac ctcagaaatg ttcgtgcccg       240
     tgtcactcaa ccggagggga gcaggaggat ctgttgcagc gtcatcccac aggagcagag       300
     tagcttcaag tagagtcaac cgtgcacttg agaagctacg cttggaggag caggcgctag       360
     agacgagaat caaggtgaat gaggacctcc ttcggttaag ggacctgcag aggcagcgta       420
     tggatctgga ggatgaattg gatggtgtgg agagcctctc tttgagtgat gaagcagagt       480
     cacgtacaca ggaatgggtg gagagcgtgt cggtgaagaa tcaatcacca ccaccaccgt       540
     acgatgatca tcagaagcgg ctccaagaga aggaagagga ggagagacga cgactggaat       600
     cctggcatga cccgcgacaa cgacctacat taattcaaca taatgaagat gtgaagccca       660
     cacgaccacc accaccgctc tacccaatta atgagccaat gccgcaccac agcagaagag       720
     aaccaccccc acaacaggat cccatttcac aattgaccga ggcgctaaag gcagtgatca       780
     cgcaacctca acagcagatg gaaaggttca tggcatgtca gacgctagga agggatctac       840
     ctcagttcag tggaaatgtg gaggagtggc caacattcat cagttattac cgcacatcaa       900
     cggcggagtg caggatctct aacagccaga atcttatcag actccagaaa tgcctaaaag       960
     gtgaagctcg agaagccgtg aatcctcttt tggtagcatc atcaaatgtc gaagaaatca      1020
     ttcgtgtgtt ggagaagcat tatggacagc ccaacacaat cattaggact ttgatgaaga      1080
     aagtgaagga aaccccagca gcaacagaag gaaatccaga tagccttgtc aaacttggag      1140
     gagtagtgcg taacatggtc caaacagtta cgtcacttgg caaagtcaat cacctggaga      1200
     atcctcagct actggaagaa attgtggaca agttacctaa tggcctgaga ctggagtggg      1260
     ctacgtacat ggtgctatta agacccgccg aagcagatct gagggatttt tcatgttggc      1320
     tggagaagat aactgatgca gctctactac tgaataggtc agttccatct tcggaagtta      1380
     ctgacaaagg cggcaagaag cacaaagcca aaggagcatc gagtaagccg gaaacagcaa      1440
     tgaccgtgga ggagaaagcc aagcagcaga aatgtggatt ttgcgaaaag cccaatcaca      1500
     aaactgaaga ctgccgtgga ctactaaagc tgagcccaac ggacagaaat gattgggtga      1560
     agaagaaagg ctgctgcttt tcctgcctga gaatgggaca tgccttccgg aaatgccgca      1620
     aacgccaaga atgcggtgaa gatgggtgca cacgacagca ccaccgagtt ctccactgca      1680
     atagtgtgga ggaaagggaa tctcccaaaa agaagaaaac gtcactctgg agcgatgact      1740
     ctgatgatga cgacggcaag aaaacgacgt ggaatccgtt cgagaggaaa agcaagacaa      1800
     atgaagagtc aaacggaaac gctacttcat cagacccgtc ggtttacttg caaattgttc      1860
     ctgtcgtgct ctatggacca aagggacaac aggcgtatga gtacgcattc tgtgacaacg      1920
     gaagtacggc taccatgatc gacaaaagtc ttgccgtgca gctcggattg gaagggcgca      1980
     cagatccact gactttgagg tggctggatg gaaccacaat tgatgatgac cagtcacgac      2040
     gcgtaacagt gggaatcaga ggcaaggggg aaaagaagtc gtaccttgtt gaaaatgtac      2100
     ggaccgtaca taatcttacg ctgaggatgc agwcagtcag tatgaagaag ctgaaagaaa      2160
     aatggaggca tctacagcaa gttggcattc cagagatgaa gaatgtaagg ccaagaatcc      2220
     tgattggaag tgacaatgtc gacctcatca tttcacggga agttcgagaa ggacctccga      2280
     acgctccagt agcttcaagg aataaattag gctggagtat cattggcaag aataaaatga      2340
     tgaagggaag agtcgacacc aattttatct tctgtgcagc tgagatgtcg gaaagtgatc      2400
     gtgaactcca tgaattggtc aagtcatcat tctcgctcga ggcaatagga atcaacgtca      2460
     acagtgataa cctgaagtct aagcaggatg ccagagcaga agaaatgatg acggagtaca      2520
     cgaaaagggt aggaagaaag ttcgaggtgc ctctactttg gaaagaagac aaccccctcc      2580
     tgcccaataa ttacaggact gcacagaaaa gactacaaca aattgaaaag aagatggatc      2640
     gtgatcccgc attcgcggaa gagtactgca aaaaagtgca gtattatttg gatgctggat      2700
     atgcacgtaa gctgactcag gaggagacgg agatgacaac agacaagaca tggttcctcc      2760
     ctcacttctt tgcctaccac ccaaacaaac ctggaaagcc tcggtttgta tttgacgctg      2820
     ctgctgaaca taatggagtc agcctcaaca agaaacttgt gactggacct gatatcctga      2880
     agtcgctgcc tggagtwatc atgcaatttg gagagaacag ggtggcattc acggcggata      2940
     tcaaggagat gttccaccaa gtacaaatga gagaggatga ccagcaggcg cagagatttt      3000
     tgtggcgtgg aatggaaaga acgagacccc ctgagcagta cgtcatgaaa gtaatgacat      3060
     ttggatcaac gtgctctccg tacgcagcgc agtatgtgaa aaatttgaac gctctggaat      3120
     ttmangacga gtaccctgca gcagtcaacg ccatcatcaa tcatcattat gttgatgacc      3180
     tcgcacacgg agcagataat gaagacgagg ccctgaagat gatcaaggaa ataatatatg      3240
     tacatcagca aggcggattt gacattgtga agtggagctg cagttccaga gccgtcctgg      3300
     agaaaattcc agaagaacta cgaggcagcg aatccaagaa gctggaaatg aaaggcgagc      3360
     tgcccatgga gcgwgtactt ggcttaattt gggatcccaa cgaagactgt ttccagttcg      3420
     ccacgaactt caacaaggtg gacaaggaca tcatcactgg agagagaatg ccgaccaaga      3480
     gggaggtgct gaagaccgtg atgagcgtat ttgacccgtt gggatttata agtcattacg      3540
     tgataaaagc caagattctc tatcaacaag tgtggaattc aaaggtggac tgggatgaga      3600
     ccatccaaga agctcagcag aagttgtgga aaaagtggat aagccaactt ccccatgtca      3660
     aggacctcaa gattccwaga agctattttg gaaatggcac gaagaagaaa tgtgaattgc      3720
     accttttcaa tgactccagt tctgaggcat acgtaagcat agcttatctc cgttggaagg      3780
     aagacaaaac gtatggagtc aagatgatat gtgcaaaggc aagagtcgtc ccgctgaagc      3840
     cacaaagcat tccaaggcta gagcttcaag cagcgcttat gggagtamga ctwgcgcaat      3900
     tcataaaaga tgaactgaat ttggaaatcc tttccactac ctactggact gatgcgaaaa      3960
     ctgtgatcct gtggctccaa tcagatgtga atcgctacaa gccatatgta gctcaccgag      4020
     taggggaaat cctggagaaa agtaatgtac tggactggag atggctgcca acaaaattga      4080
     acgtggctga tgaaggaaca agaagcagtc cggatgtgga actcgtgtac gactccaggt      4140
     ggtttcaagg accagaattt ctctactcgc caaaagaaga atgggacttt ggaaagccac      4200
     agatgaaaga agatccagtg gagatggaag tgaaaaagga attttgcgga tacgctcttc      4260
     caggaaaagc tctacagcat ttacctgatg ttaccagatt ctccagctgg acaagactga      4320
     tccgtactac agcgtgggta cgaagattca tcatcaagaa atttaaatta tgtggccagc      4380
     cgattcctga agagcttacc gttaaggagt tagtgttggc gcagaagcag tggtggagat      4440
     gtgttcagaa gacctgcttt ccgtacgagt ttgcagcgtt amgagacgga aaaccactgc      4500
     caaaagaaag caaaattgtg caactatccc cattcctgga cgaggagggg ataatgaggg      4560
     cagcatcaag acttatccat tccccggaaa tgaagataag tcaaaaacaa ccggtgatac      4620
     tggaccccaa ccatgcgtac acaaagttac tcatcaagca gtatcattta tgggcagctc      4680
     atcaaggaca ggagtacgtg atcaatgagc tgaggcaacg ctattggatc ccccgagttc      4740
     gagtagcagt caaaagtatt tggaactctt gtctggaatg cagtcatcgg aaagccaaac      4800
     cggttgtcgc tgaaatggcc ccattaccag aatttcgtgt aacaaagcca gcaagggcat      4860
     ttactgtgtg tggactggac tatttcggcc cagtaaatgt cacaaaattc cgacgacgtg      4920
     aaaagaagtg ggtggcactg tttacgtgta tgcacacacg ggcagtgcac ttggagctag      4980
     tggattccct ctctacggac tctgtcatca tggcgatgat aagaatggca agcgtgagag      5040
     gatggccgaa gacattccat tcagacaatg gaactaactt ccgtggtgcc agcgtggagc      5100
     tgaacaagtc tttgaaggag ctggaccaga agaaaattat ggcggagttg gcgctgaagg      5160
     aagtagagtg gaaattcatt ccaccgtcag ccccgcactt tggaggtaca tgggagaggc      5220
     tagtgcgcag cgtgaagaaa gtacttggag tactgctgaa ggagcaagcc ccgaaggaag      5280
     agctactacg cacgttactt gctgaagctg ctaatatcgt taatagcagg ccgcttacct      5340
     atgtaccaaa tgacattgag gatccggamg tactcacccc aaactgcttt ctctttggaa      5400
     ctacgagtgg agcaccagtc ttagccaaag tggacgagaa agacatgtgc ctgagaaagc      5460
     agtggaaagc aacgcaacgt atggctgatt gcttctggag acggtgggtg aaggagtacc      5520
     tgcctacgct gacgaagaga acaaagtgga tgagaagcag ccgacctgtc cagaaaggtg      5580
     acgtcgtggt gattgtggac gacaatgcgc cacgcaacgt ctggctgaaa ggaattgtag      5640
     tggagaccca tccaggaggt ggagtgaccc gcgtcgtaga cgtgaagacc aagaacggga      5700
     cctaccgacg acccgtggtg aagctctgcg ttctagaagg catcaaccag gaagctgttt      5760
     ccgaacgtgg cgaaacagcg gaggggagca                                       5790
//
ID   BEL-16_SiCu-LTR repbase;    DNA;    INV; 526 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-526
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5013-5013 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 526 BP; 178 A; 70 C; 109 G; 169 T; 0 other;
     tgttggcgaa cgcaggcagc agacaaagga aataagaagt ttccagaaga agaaaatgag        60
     tgcgtggcgg tggagaagct gcgtgcattt tatgtatatt aatattatgt atttttgtac       120
     tccgttcatg gcaaaacgta ttgtatgtat ttttgttcgt tgacttgtgt gtatgtaaaa       180
     atgagagaag acgagcagtc tagaattcag tgttgattga gagctcgcca tgaacggaga       240
     agagtaacta tcatcattaa ttagtttttt cgtactacat aaatttaggt aaagcgatta       300
     aactgaaact gctaaaattg ttaaagcagt taattagtac tatcaaatgt aaaaaggtta       360
     tttggcatga tttagtggca ttttacataa agttgaataa agtgtcagtc gtcaattaac       420
     aatcttgata agtgctaaaa cggaatcatt taattgttca tcatttcaaa atatgtctta       480
     tgttgcacat taacatttcg aaccaggcaa cattctgtca gcaaca                      526
//
ID   BEL-16_SpEx-I repbase;    DNA;    INV; 6140 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6140
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6896-6896 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           854..6106
FT                 /product="BEL-16_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTSELDKHDAIKYRELTLKRSSIKGQITKFKNYISRL
FT                 ESVQLSSLELVELSLKLNKFEGLSSKFDDLQNDIEVLNHKNLDSEIDERDN
FT                 IEQDFITCIATAKNLIEDANIQSEVRRKSSAFSCNHHHNSDPIGFKLPRIE
FT                 VSKFDGAYFRWLEFRDTFRDLIHNNERISDIHKFHYLTSYLEGDAARIISN
FT                 LEVSSSNYKEAWSLLCERYDKRRLLINYHLSELLNMKPITSESERSLRFLA
FT                 DHVTKNLRALANLGRPTDKWDDIIVFMMSSKLDSNSLMKWEELYSTFNSDD
FT                 DVPTLAQFHKFLTDRASILEAMNRSKLDSSNKTLKVVSRNQFNTNSHKQQS
FT                 HSHNKPHNVSSNNKYNNRPPHINSFISNQQSQSQNKINCVICNEFHRIYSC
FT                 PTFKNKTVQDRLADVEQYNLCANCLRQGHQVRDCSLGPCIFKGCTERHNSL
FT                 LHQSPSTSAHSAEILSTFSEPQSFHVFLSTIVIEVSNPLTNHTEKVRALLD
FT                 CGSQSSLMTKNLKHKLKLATNQTNEINIIGIGNNICHKVTETCNIKINSLN
FT                 NPYSVTLSCLVLDELTADLPRFPIDIKHIELPDYMKLADPSFNVPSKADVI
FT                 LGADIFWDVVGTEQYSLGPKYPKLINSKFGWFIAGPMLSSCSKYIQCNHLC
FT                 SSSQQYQSDSITNIDKKLTKFWEIEELPQRTNLSSSERLCEDHFISNTTRL
FT                 ESGRFCVRLPLLDSPNTLGDSYDLAKKRFLNLEKRFRKNTELKTQYTDFIN
FT                 EYAELGHLSQSCIAKPTPGYFLCHHAVFKEGSESTKIRVVFDGSAPTSSGR
FT                 SLNDILMVGPNKQDSLFSILIKARQYKYLLTADIEKMFRQVACHKDDQNLQ
FT                 LILWREDESQPINTYKLNTVTYGTASASYLSTRCLWQVGEECGDELIKSII
FT                 QNDFYVDDLITGSNDEDELRHIKDAVSRALNLACFPLRKYKSNLTSILRDF
FT                 SDVQKDKLITSESSNTLGLGWSPSSDQLHFPIKPLTVYEKLTKRIIMSNSL
FT                 KIFDPLGLLSPCIIIPKMMLQKLWLLRLGWDEPVSQDIQESWDEFVNNLPH
FT                 LGNLQIPRHVLCENAKVIEIHSFSDASQSAYGACIYIKSVNENNDISVKLL
FT                 CSKSKVTPLKPMTIPRLELCAALLAARLTKAVCDAIKYKPSRVVHWCDSSV
FT                 VLAWIHSEPRSLKTFVANRIGEIVELTQPSSWRYVPTLENPADHISRGVNP
FT                 SQLPKLNLWWYGPQFLSKDESYWPILNSNNINKENLPEVKTTLSITVDEPI
FT                 IDFTRYSSLTKLQRIIAFVKRFIYNTKNPNFKHTELLTTDELNQSFNSICF
FT                 IAQQQSFSNEYKLLKQNKPLHSKSKILSLSPFIDNNNLIRVGGRIQASDFP
FT                 HEKKHQVLLDSSHPLTKLFFRREHIRQMHAGPQLLLATVRETIWPINGRHL
FT                 ARRTVHNCVTCRRFQGTTLQPKMGNLPAQRVTVSFPFLSVGLDFAGPFFII
FT                 NRKGRGARLTKCYLCLFICMRYKCIHLEAVSGLSKDDFILTLRRFIARRGK
FT                 PSEIFSDNGRNFVAAAKELGTFLKTNKHLLSDFAAQEGIRFNFIPAYSPHF
FT                 GGIWESGIKSAKHHIKRVIGNLHLTFEELQTLFAQVEAILNSRPLCPMSSN
FT                 PNDFLSLSPGHFLIGRALTAVPSPLLEDEDPNKLKRYQRLEQVRQHFWRRW
FT                 QAEYINELQRRQKWMKDTPQLKVDDLVLIKEDLPPLCWRLGRVTRLFPGPD
FT                 GVVRVADVRTATGCLRRALVRLCPLPSQEEP"
XX
SQ   Sequence 6140 BP; 1937 A; 1262 C; 1138 G; 1803 T; 0 other;
     taaattggcg accgtgacag gacttggaca cgcaatcaca tcaaatttgc aagtcactac        60
     tcccatagtc aggaggacgt gcctcatcag ggattgaaga ccgtcaggag ccggcggcta       120
     agcagcagca agacttagtc acgaccgcgg cagcaatctt ctacagagat aagtgtccta       180
     atcctttttt tcctcatatc acattaacca tttcctatta atcattattt tattgccttc       240
     acttgtgtat tcaaggtcac aaagggcaat catcaacctc tattcattac tcgtcaagta       300
     tttttcgcat ttaaacgcag attaacttct ttcattgtcg taaagttgac cggagtccaa       360
     aggtcactcc tggttacgcg tgtgcaagtg gttgcaaatt caacattgcc cacttaatat       420
     ccacttattt gttgcctatt taccatttta aacgattatt aactaaatta atcctatttc       480
     aagtaaaaat aaccgttatt tattgagttt tcgttaatat ttaaaaactt tcgaaacata       540
     aacgttttcc atctcattaa cttgaaattt ttgcagttta gttcacagtc caagtaaata       600
     tcgttaggta attgttcaca gtacagtcat ttcttgtttt tcacccgttc tgccgaaatt       660
     tccaggtcgg cggaggaata cggcctgcca gttcagacga tcagctgtgg ctgtgcggaa       720
     ccggtttctt cgtcgcaggt gtcgccgggc tgacgggagt gagataagac atccattgtt       780
     tttgttgtaa acaagtgcag ctaagtggac aagttttatt gataattcaa ttttataaat       840
     cattagcgta acaatgactt ctgagttaga taaacatgat gccattaaat acagggagtt       900
     aactttaaaa cgtagctcga ttaaaggcca aataactaaa tttaaaaact acatttcaag       960
     attagagtcc gtacaattgt ctagcttaga actcgttgag ctatcgttga aattgaataa      1020
     atttgaaggt ttatcttcta aattcgatga tcttcaaaat gatatagaag ttttaaatca      1080
     caaaaatttg gattcagaga ttgatgagcg tgataacatc gaacaagatt ttattacatg      1140
     tatagctaca gctaagaatt taattgaaga cgcgaacatc caatcggaag ttcgtcgtaa      1200
     gtcttcagcg ttttcatgta atcaccatca caactctgat cctatcgggt tcaagttgcc      1260
     acgcatagaa gtttccaaat ttgacggggc atattttcga tggcttgagt ttagagatac      1320
     ttttagagat ttgatacaca ataacgaacg tatttcggat attcacaagt ttcactattt      1380
     aacgtcatac cttgaaggag atgcggctcg tataatttca aatcttgagg tttcgtcttc      1440
     caattacaaa gaggcgtggt cattattgtg tgagcgatac gataaaagga ggttactcat      1500
     taattatcat ttatcggaat tattgaacat gaaaccgata actagcgagt cagaacgttc      1560
     tttacgattt ttagctgatc atgtgacaaa gaacttacga gcactggcta atttgggtcg      1620
     acccaccgac aaatgggatg atattattgt ttttatgatg tcttccaaat tagatagcaa      1680
     tagtttaatg aagtgggaag aattgtacag tacatttaat tcagatgatg atgttccaac      1740
     tttggctcag tttcataagt tcttgacaga ccgtgctagc attttagaag caatgaatcg      1800
     tagtaaactt gacagtagta ataaaacact taaagtcgta tcacgtaatc agtttaacac      1860
     aaactcacat aaacaacagt ctcattcaca caataaacca cacaacgtta gttccaacaa      1920
     taaatacaat aacagacctc ctcatattaa ctcttttatt agtaatcagc aatcacaatc      1980
     acaaaataaa attaattgtg ttatttgtaa cgaattccac agaatttact catgtccaac      2040
     atttaaaaat aaaactgttc aagatagatt ggctgatgtt gagcaataca atttgtgtgc      2100
     taattgtttg agacagggcc atcaagttag agactgttca ttaggtcctt gtatttttaa      2160
     agggtgcaca gagcgccata attctcttct tcatcaatca ccgtccacat ccgcacactc      2220
     tgctgagata ttgtcgacct tctcggagcc acaatcattt catgtatttt tatcaaccat      2280
     cgtcattgaa gtgtcgaacc cgttgactaa tcacacggag aaggtgcgtg ctctcttaga      2340
     ctgcggcagt caatcttcat tgatgacgaa gaacctgaaa cataaattaa aattagccac      2400
     aaatcaaaca aatgaaataa atataatagg tataggcaac aatatatgtc ataaagttac      2460
     agaaacatgc aatattaaaa taaattcttt gaacaatccc tatagtgtta ccttgtcctg      2520
     tttagtgctt gatgaactga cagcagactt acctaggttt cctatagaca ttaaacatat      2580
     agaattaccc gactacatga agttggccga cccaagcttt aacgtaccat caaaggcaga      2640
     cgttattcta ggggcggata tattctggga tgttgtaggc acagagcaat attcccttgg      2700
     tcccaagtac ccgaaattga taaattcaaa gtttggctgg ttcatagctg gtcccatgtt      2760
     atctagttgt tctaagtaca tacagtgtaa tcatttatgc agttcaagtc aacaatatca      2820
     atctgattca attacaaata ttgataagaa gttaaccaag ttctgggaaa ttgaagagct      2880
     tccccaaagg actaacctta gttcaagtga aaggttatgt gaagaccact tcatctctaa      2940
     cactacacga ttagagtcag gtagattttg cgtcaggcta ccattgcttg atagtcctaa      3000
     tactctaggc gattcatatg atttagccaa aaaacgtttt cttaatttag aaaaaagatt      3060
     tcgcaaaaat actgaactca aaacacaata cacagacttt attaatgaat acgctgaatt      3120
     aggtcatttg tctcaatcat gtatcgcaaa acctacccca ggttatttct tatgtcatca      3180
     cgcagtattc aaagaaggaa gtgaatccac caaaattcga gttgtgttcg acggctcggc      3240
     tcccacctcc tctggccgct cgcttaacga cattctcatg gtaggcccta acaagcaaga      3300
     ttctcttttc tctattttaa tcaaggctag acaatacaaa tatttgctca ctgccgatat      3360
     tgagaaaatg tttcggcaag tggcgtgtca taaagatgat caaaacctac aactgatttt      3420
     atggagagaa gacgagtcgc agccaatcaa tacgtacaaa ttaaataccg tgacttacgg      3480
     cacagcaagc gcgagctatt taagtacgcg gtgcctgtgg caagtcggcg aggaatgtgg      3540
     ggacgagctc atcaaatcta tcatacaaaa tgatttctat gttgatgatc tcatcactgg      3600
     atcaaatgac gaagacgagt tacgtcacat aaaagatgca gtatcaaggg cattaaatct      3660
     agcctgtttt ccattacgaa aatataaaag caacttaact agcattttac gtgattttag      3720
     tgatgttcaa aaggataaat taatcactag tgaatcgtcg aacactctcg gattgggatg      3780
     gagtccttcc agtgatcaat tacactttcc cataaaaccc ttgacagttt atgaaaagtt      3840
     gacaaaacga atcataatgt caaattcatt aaaaatattc gacccactag ggttactcag      3900
     tccatgtata atcataccca aaatgatgtt acagaaatta tggcttctcc gccttggctg      3960
     ggacgagcct gtgtctcaag atattcagga atcttgggat gagtttgtaa acaacttacc      4020
     tcatctaggt aatttacaaa tacctcgaca cgttctttgt gaaaatgcaa aggtaatcga      4080
     aattcattct ttcagtgatg catcgcaaag tgcctatggt gcctgtattt atattaaatc      4140
     tgtaaatgaa aacaatgata ttagtgttaa attactatgt tcaaaatcca aagtcacacc      4200
     tttaaaacct atgacgattc ctcgtttaga gctctgcgcc gccctgctcg ctgccagact      4260
     gaccaaagca gtttgcgatg cgattaaata caaaccttca cgtgtagtcc actggtgcga      4320
     cagcagcgta gtccttgcct ggatccacag cgaacctaga agtttaaaaa cttttgtagc      4380
     gaatcgaata ggtgaaatag tagaactaac acaaccatca tcatggaggt acgtacctac      4440
     cttggaaaac cctgctgatc acatttctag gggtgtcaac ccgagtcagc tccctaagtt      4500
     gaacttatgg tggtacggcc cacaattctt atctaaagat gaatcatact ggcctatatt      4560
     aaattcaaat aatataaaca aagaaaactt acctgaagtt aaaactactt taagcatcac      4620
     tgtagatgaa ccaataatcg attttacaag atattcttca cttaccaaac ttcaacgtat      4680
     catagctttt gtaaaaagat ttatttacaa cacaaaaaat ccaaatttta agcacactga      4740
     acttttaact accgatgaat taaatcaatc tttcaacagt atttgtttca tagcacaaca      4800
     acaatcattt tcaaacgaat ataaactttt aaaacaaaat aaacctttac acagtaaatc      4860
     taagatttta tcgttatctc cgttcattga taacaataat ttgatcagag ttggtgggag      4920
     aattcaagcc tcagactttc cacatgaaaa gaagcatcaa gtacttcttg actcatctca      4980
     ccctctaact aaattgttct ttcgacgaga acacattcgt cagatgcacg ccgggccaca      5040
     actcttgtta gctacagtta gggaaactat ctggcctatc aacggtcgtc atctggctcg      5100
     tcgcacggta cacaactgtg tgacatgccg gcgtttccaa ggtacgaccc tacagcccaa      5160
     aatggggaat ctcccagcac agcgtgtcac tgtcagcttt ccgttccttt ctgttggtct      5220
     agattttgct ggtccatttt ttatcatcaa tcgaaagggt cggggagcaa gactaacaaa      5280
     atgttatttg tgcttattta tttgtatgcg gtacaagtgc atacatttag aggcagtaag      5340
     tggcttatcc aaggatgatt ttattctgac tttaagacgg tttattgcac gacgtggcaa      5400
     gccatcggaa atattctccg acaatggccg aaattttgtc gcagcggcta aggagctagg      5460
     cacattttta aaaaccaata aacacttgct ttctgacttc gctgcacaag aaggtatacg      5520
     ttttaatttc attcccgctt actcccctca cttcggcggc atttgggaat caggcattaa      5580
     atccgccaaa catcatataa aacgtgtcat aggcaatctt catctgacgt ttgaagaatt      5640
     gcagacttta tttgcacaag tggaggcgat actaaacagt cgtcccttgt gcccaatgtc      5700
     ctccaatcct aacgacttcc tttccctctc tccaggacac tttctcatcg ggagagcgct      5760
     gactgcggtc ccatcacccc ttctcgaaga tgaggatcca aacaagttaa agaggtacca      5820
     aagattggag caagttcgtc aacatttttg gcgtcgctgg caagctgaat atatcaacga      5880
     acttcaaagg cgacagaagt ggatgaagga cactccgcag ctcaaagtgg atgacctagt      5940
     cctaatcaag gaagacctac cacctttgtg ttggcgactc ggaagagtaa caaggctgtt      6000
     tccgggaccc gatggcgtgg tacgagtggc agacgtaaga accgcaacgg gttgccttcg      6060
     acgagcttta gtccgcttgt gccctcttcc aagtcaagaa gagccttagt tgaaagagga      6120
     gcctttcaac ggggggagta                                                  6140
//
ID   BEL-16_SpEx-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-283
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6924-6924 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 283 BP; 83 A; 64 C; 44 G; 92 T; 0 other;
     tggcgcggcg ttagcgcctg ctcaatcagc tcagcaacat gtcactacta cggcgcacat        60
     agctatcgtt gtttttaaaa cattttctaa aactacctgt cgcgaattgc tttttatatt       120
     agctttttat attatattca ttcaccgctc agtctccaca cagaacagaa gcatttttgt       180
     aatttccaaa atttcacagt attacacgtt gtcacagttt actagggttt tatttctaaa       240
     acaagtgaag gaatacgact ctcaaatgtc tcacaagcag aca                         283
//
ID   BEL-16_TrNi-I repbase;    DNA;    INV; 6042 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6042
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1023-1023 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           635..5791
FT                 /product="BEL-16_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MDSYNDIQEDLKSKIVKAKINFKKCPKDRLTASYIET
FT                 RLESLEQHWNMFYTTHLKIISEIKRSELFSSEYHKNGMYDEVEETYVLYKS
FT                 DLKELLCKRKTMPCSDTSSIPGNNNEVSNFKLPEVKIPVFSGKYHEWQTFR
FT                 DLFIGLIHNNKRLDDAQKMYYLKGYLTGDAEHLLRNVNVTSDNYKESWKKL
FT                 ESMYNNKRFLANGLLKRLFGQKALTVESATDIKRLISTTSECLGSLKNLGI
FT                 DVASWDIMIIHIVSTKLDRETRKVWEFQVASDSKDDFPTFDLFSEFLISRF
FT                 RGLENLDSKTDKNPKSTQSFHVTKDKIKNVTCGYCSADHRISSCPKFSKES
FT                 VDSRRNIVQEKNLCFLCLNSNHSARFCRNTHRCQVCKRRHHSLLHPTGVSG
FT                 SAVGEGSSAAHEGTSSVANEEKDVAAKADDKPIVSCLSTGNIRQAVLLTTA
FT                 LLKAESKHGTYRVVRALLDQGSQGSFVTESMVQYLGLKKIPSKNTVIGVGG
FT                 QKSTTSTAKVVVTIGSRVDPTFRLQVHAYVLKSVTGLLPATRVTRVEWVDL
FT                 DDNELADPEYFRPNKIDILLGAEIYSQVIRDGLKKNLSGTLLAQGTALGWI
FT                 LSGAVEVDNDPNIQSHIAVMHSSVQDDDIMLRKFWELEAEPSGTKKMLTED
FT                 EVKCEQLFTTSTLRNEAGRYIVRLPLRDEELVGKYGESKAIAEKRLKSLEL
FT                 KLGRNDKLKQDYKKVIHEYSELQHMEKVSQDKRKCKEAIYLPHHAVIREDR
FT                 DTTKVRVVFDASCKGSNGMSLNDNLLIGPPLQAELRHIIMRWRSYQICLVA
FT                 DIVKMYRQVLVNRKDTIFQRILWRDNPENEIEEYELMTVTFGTASAPYLAV
FT                 RALHQVAYDECEFNPEIKKIILNDFYMDDLMTGAENIEKGFKIFTEMNDIL
FT                 SRAGFKLQKWMTNSKELLNNIRDEKKPTDEELLIKMDEISKILGLIWNSRK
FT                 DTFQYSLKLPTMTAPVTKRKIISAISRLFDPLGWLAPTIILAKMYIQKLWL
FT                 AGLEWDQEIPSNLEQEWSTYHHSLASLVQIRIPRWLHTGSDNTKSELHGFS
FT                 DASKLAYAAVVYLRVVDSSGNIHTSLITSKTKVAPIKQVSIPRLELCAAVL
FT                 VSKLIAEVGEVMGIPKTDWHAWTDSEVVLAWLNCHPCRWKTFVANRVSDIL
FT                 TTLDTHHWAHVPTKQNPADCASRGVSSSELVGMSIWWEGPSLLKEMVIDYK
FT                 RPKHLATRLEEVRVHTCTLDVTFWSRFSTLPRMIRVVAYCRRFLKRPGNRL
FT                 KYLSKQELDEATEICLKRSQEERFAIELEELKKNGICQKGSLKSLNLFLDS
FT                 KEIIRVGGRLEMAQLPYDRVHPILISKESFLTNLLIAEAHSKTMHGGPQLM
FT                 ITYLRAKYWIIGVKLLVRKYVRQCSRCIRYASKVKTQLMGQLPSARVSPKK
FT                 PFLCSGVDYAGPIDIRVSKGRGNKSYKGYIALFICMSTRAVHLEAVSELST
FT                 RGFLAAFRRFVARRGRCTELHSDNGTNFVGAARELLYLFNAQQSSCNPELA
FT                 EYLANNGTEWHFIPPHAPNFGGLWEAGIKSTKHHLKRVIGNSTLTYEEMAT
FT                 VLAQIEACLNSRPLSYVEDQGKFTILTPGHFLIGEPPVLPPESNYERSNNV
FT                 NSLKRWQFHQKMMQDFWRRWSNDYLHQFLQRHKWAQKNPEPSVGEIVLIKE
FT                 DNMPPGRWLMGKIEQKHPGPDGITRVVTIRTQTSVIKRPTSKLCVLPICQ"
XX
SQ   Sequence 6042 BP; 1921 A; 1015 C; 1446 G; 1660 T; 0 other;
     tggtccttcg agttggatat ggtcgtgagt gtttttggtg gtcaccggtg gtggtagtga        60
     ttaccaccct acgcgccgtg actggacagt ggatcgctgt ccagagcagc cccttcaaga       120
     ggaggcacca ggtgagaggt gccttggagg tggagccggg tggagttgca gtctggagca       180
     gcctgttgga gccaaggcag ctgggactgg atgtggacac cctggaggag cggcgctagg       240
     gaggtgaagc ggagttcaag cagagggcgc cacttgaacg gtgcaagtgg taattgttag       300
     tgagaaaaat agtaattcgg aagaaaaact gtgagtacat ttacataata ttgaaaagtg       360
     cagtctcagt agtagtttcg gacttgtaaa atatttttac aaaaagtggt tggaacgggg       420
     aacctatgtc caaatttcaa aaatagtcgg ttgctgaaac acttgtaaaa ttttaaggaa       480
     ttgtgattcg gtctaaagtg ataattttga agaagttcga agtgagagac attaagttga       540
     attagtagta gtgtaatact attattataa gtttaaattg ttttcttcta ttgtgtatgt       600
     gtatttcctg ttgtgttttt tcttgcttat aaaaatggat tcatataatg atatccaaga       660
     ggaccttaag tccaaaattg taaaggctaa aataaatttt aaaaaatgtc caaaagatcg       720
     gcttacggct tcatatatag aaactcgttt ggaaagcctg gaacaacatt ggaatatgtt       780
     ttatactacg cacttaaaaa taattagcga aattaaacgg tcagagttgt ttagttcaga       840
     gtatcacaaa aatggtatgt atgatgaggt agaggaaact tacgtgctat ataaaagtga       900
     tttaaaagaa ttgttgtgta aacgtaagac gatgccatgt agtgatacaa gtagtattcc       960
     aggaaataat aatgaagttt caaattttaa attaccagaa gtaaaaattc ctgtgttctc      1020
     cggtaaatac cacgagtggc agacctttcg ggacttattt atcgggttaa ttcataataa      1080
     taaaaggctg gatgatgcac aaaaaatgta ttatttgaaa ggatatttaa ccggagacgc      1140
     agaacacttg ttaagaaatg taaatgttac ttctgataat tataaggaaa gttggaaaaa      1200
     gttagagtcg atgtataaca acaaaagatt tctggcaaac ggtctattga aacgtctatt      1260
     tgggcaaaag gctttaacgg tagaatcagc tacggatatt aaaaggttaa tcagtacaac      1320
     atctgagtgt ttggggtcat taaaaaactt aggaattgat gttgcttctt gggacatcat      1380
     gataattcat atcgtgagta caaagttaga tagagaaact agaaaagtct gggagtttca      1440
     agttgcatca gattccaaag atgattttcc cacgtttgac ctgtttagtg aatttttaat      1500
     aagtcgcttc cgtggtttgg aaaatctcga tagcaaaaca gataaaaacc ccaaaagtac      1560
     acagtcgttt cacgtaacaa aagataaaat aaaaaatgtt acttgcggat attgttcagc      1620
     tgatcataga atttcctctt gcccaaagtt ttctaaagag tcggtagata gccgtcgaaa      1680
     tatcgtgcaa gaaaagaatt tatgttttct ttgcttaaat agtaaccact ctgctaggtt      1740
     ctgcagaaat actcacaggt gccaggtgtg taaacgccgc caccattctc tgttacaccc      1800
     cacgggtgtt tctgggtcgg ctgttggtga gggtagctcg gctgctcacg agggaacctc      1860
     atcggttgct aatgaggaaa aagatgttgc cgcaaaagcg gacgataaac caatagtctc      1920
     atgcctttcg acaggaaaca tcaggcaagc ggtgttatta accacagctt tattaaaagc      1980
     tgagtcgaaa catgggactt accgggtggt tagggcgtta ctggatcaag gatcacaggg      2040
     atcctttgta acggaatcca tggtccagta tttgggtttg aagaaaatac cttcaaaaaa      2100
     tacagtgata ggtgtaggtg gtcagaaaag tactacgtcg actgccaaag tagtagtcac      2160
     gattggctct agagtcgatc caaccttcag attgcaggtg cacgcttacg ttcttaagtc      2220
     agtcacgggc cttctcccag ctaccagggt aaccagggta gaatgggtag acttagacga      2280
     caacgagtta gctgatcccg aatattttag gcctaataaa attgacattt tattgggtgc      2340
     tgaaatatac agccaggtta ttcgggatgg tttaaagaag aacttaagcg ggacgctctt      2400
     agcgcaaggc accgctttag gctggatatt gtcgggggcg gtcgaagtag acaatgatcc      2460
     taacattcag tcacatattg ccgtgatgca ttctagtgtc caagatgatg atattatgtt      2520
     gcgaaaattt tgggagttag aggcggaacc atctggaaca aaaaagatgc tcacggagga      2580
     tgaagtcaaa tgtgaacaat tgtttacaac ttctacattg cgtaatgaag caggaaggta      2640
     catcgtaaga ttacctttgc gggatgaaga gctggttggt aagtatggcg agtcaaaagc      2700
     tatagctgaa aaaagactga aaagcttaga attaaaatta ggaaggaatg ataaattaaa      2760
     acaagattac aaaaaggtca tacatgaata ttcagaattg cagcatatgg aaaaggtatc      2820
     acaggataaa agaaaatgta aagaagctat atacttacca catcacgctg tcatccgcga      2880
     agacagggat acgaccaagg tgcgagtcgt attcgacgct tcctgtaagg gttcaaatgg      2940
     gatgtcactt aatgacaatt tgttgattgg acctcccttg caggcagaac ttcgccatat      3000
     tattatgcgc tggagatcat atcaaatatg tttggttgcc gatatagtta aaatgtatcg      3060
     gcaagtttta gttaaccgga aggacacaat atttcagcgc atactttgga gggataatcc      3120
     tgaaaatgaa atagaagagt acgaactgat gacggtgaca tttggtactg catcagcacc      3180
     atacttggcg gttcgcgctc ttcaccaagt ggcttatgat gagtgtgaat ttaatcctga      3240
     aataaagaaa attatattaa atgacttcta catggacgat ctgatgactg gagctgaaaa      3300
     catagaaaag ggctttaaaa tcttcacaga aatgaatgat attttgagta gagctggatt      3360
     caaattgcaa aagtggatga ctaatagtaa agaattatta aataatataa gagatgagaa      3420
     aaaacctaca gatgaagagt tactaataaa aatggatgag atatcgaaaa tattaggact      3480
     tatctggaat tcacgcaaag acacgtttca atactctctg aaactcccga cgatgactgc      3540
     accggtaaca aaaagaaaaa ttatttcagc aatatcgcgt ttattcgacc ctttgggatg      3600
     gttagcacct accataatct tagctaaaat gtatatacaa aaattatggt tggcagggtt      3660
     agagtgggat caagaaattc caagcaattt agaacaagaa tggagtactt accatcacag      3720
     cttggcatct ctggttcaaa ttagaattcc tcgatggtta cataccgggt ctgataacac      3780
     gaagtcagag ttacacgggt tctcagatgc atcaaagcta gcgtacgcag cagttgtgta      3840
     cctgagggtg gtcgatagtt ctggaaatat tcatacgtcg ttaataacgt ctaaaacaaa      3900
     ggtggcacct attaaacaag tgtccatccc aaggctggaa ctctgtgcgg cagttcttgt      3960
     tagtaaatta atagcagaag taggtgaagt catgggtata ccaaaaacgg attggcatgc      4020
     atggaccgac agtgaagtag tattggcatg gttaaactgt catccatgcc gctggaaaac      4080
     ctttgtggcc aaccgagtct cagatattct gaccacatta gatacgcatc actgggcaca      4140
     tgttccgact aagcaaaatc cggcagattg tgcatcgcgt ggggtttctt cttccgaact      4200
     tgtaggcatg tcgatatggt gggaagggcc gagtctccta aaagaaatgg taatagacta      4260
     caaaaggcca aaacatcttg ctacgcggtt agaagaagtt agggtacata cctgtacgtt      4320
     ggatgtgacc ttttggagca gattttcaac gctgccgaga atgatccgag ttgtagcgta      4380
     ttgtcgtcgg tttttaaaaa ggccaggaaa taggttgaaa tatctgagta aacaagaact      4440
     agatgaagca acagaaatat gtttaaaaag aagtcaagaa gaaagattcg caattgaatt      4500
     ggaggaattg aagaagaacg ggatctgtca gaaaggaagt ctaaaatcat taaatttatt      4560
     tttggattcc aaagaaatta taagagtcgg agggaggctt gagatggctc aattacctta      4620
     cgatcgagtt catcccatat taatatcgaa agagtccttt ctgacaaatc ttttaattgc      4680
     agaggcgcat agtaaaacta tgcatggtgg gccgcaactt atgataacat atttgcgggc      4740
     caaatattgg attataggag tgaaactgtt agttaggaag tatgtaaggc aatgcagtag      4800
     atgcattcgt tatgcatcga aggttaaaac ccaattaatg gggcagttgc catcagcacg      4860
     ggtttctcct aaaaaaccat ttctgtgtag cggagtggac tacgccggcc ctattgacat      4920
     aagggtatca aagggtcggg gtaataaaag ctacaagggc tacattgcat tattcatatg      4980
     catgtccacc agagcagtgc atttagaagc tgtcagtgaa ctgagcacac ggggtttttt      5040
     ggctgcattc aggagatttg tggcaaggcg gggtcgttgc actgagttac acagcgacaa      5100
     tggcacaaat ttcgtgggcg cagcacgtga attgctctat ttgtttaatg cacagcaatc      5160
     tagttgcaat ccagagttag cagaatacct cgccaataat ggtacggagt ggcattttat      5220
     tccgcctcac gcgcccaact ttggaggctt atgggaggca ggaataaagt ccaccaagca      5280
     ccaccttaaa cgggtgatag gaaactctac cttgacatac gaggagatgg ccaccgtgct      5340
     ggctcaaatt gaggcgtgcc tcaattcaag gccattgtct tacgtggagg accaaggtaa      5400
     gtttaccata ttaacgcctg gtcattttct gattggggag ccacctgttt taccaccgga      5460
     gtcaaattat gaaaggtcaa acaatgtaaa cagtttgaaa cgttggcaat tccatcagaa      5520
     gatgatgcag gatttttggc ggcgttggtc taacgactac ttgcatcaat ttctgcagcg      5580
     gcataaatgg gctcagaaaa acccggaacc atctgtgggg gagatcgttt taataaagga      5640
     ggacaacatg cctccaggca ggtggttaat gggcaaaatt gagcagaaac atccagggcc      5700
     tgacggaatt actagggtag tcacaatacg cacacaaacg tcggtaatta aaagaccgac      5760
     atcgaagtta tgcgtattgc caatttgcca gtaatctaag ttgctaatta tttaggtaca      5820
     ttatattata ttattattaa tatggttaag tttaccctgg taatgttaat ttttcggtat      5880
     ttttgtgttg ttatttttaa gttaatttga attcaggaga tttttatatt gtatgttaca      5940
     cacgaccgcc aaggacgtga tgttagtggg gtacttacgg tatatttggc atggtgggcg      6000
     gtgcttaagg acatttagcc aatatgtcct tggtgggcgg ta                         6042
//
ID   BEL-16_TrNi-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-16_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-273
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1051-1051 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 273 BP; 65 A; 45 C; 68 G; 95 T; 0 other;
     tgtatagatc tggagcgaaa tcatagcgcg atcaacattt ctactgaatt attgtcacga        60
     gttgtcgcgg cgctcgatag atggcgttgg cgtcgattta gatcgcgcta tggtttcgtt       120
     acatgcattt ggttaggtag tatttattaa ttttattttg tgtgagcagc gcacctatcg       180
     gggttacgtg taactaatta tatttaataa acgggaagtg acgtaatctg tggtgttatt       240
     tatatccctc ggaagtcgac ctcgggtttt aca                                    273
//
ID   BEL-170B_AA-I repbase;    DNA;    INV; 5856 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 24.01, Created)
DT   27-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-170B_;
KW   BEL-170B_AA-I; BEL-170B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5856
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5856
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 90-90 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..5854
FT                 /product="BEL-170B_AA-I_1p"
FT                 /translation="MKVFADGGVMADRIDAARPVDLVLLHKILYCDDTTLN
FT                 WIRRRVLRFEGFDFERRSPQFEVRMRIIEDAEPEHVQTTCEILDVPIGDAA
FT                 CSKQNVAVAIMERLFSMTDEAKNVLEKEPSRTLTPPPMSLMAQTTEYGFSM
FT                 QSQRPGGDQRGVSITRSVSSSKSVQVTVMKAKLETERKLAQLEEQEAKTRM
FT                 ERQQKLLKAELELKIAEAELNEELVEQRDVDPCLIVHDADPLDRVQQWIQN
FT                 LQLKSSSTSSQESISQQLRASSTPLLKSSFQPRDLVINEQPPILSSSTGTA
FT                 NVQRDHGEQLGDVNAEMLQITKSMQRMLARSAGSNNLPVFDGNVREWQLFI
FT                 NQYRLSTEAGEYSGIENVVRLNKCLVGKAREAVLHMLMSSVDGEEIIKALE
FT                 LRFGRPELLLRALIDEVKYFPVVSDWSTFIEFDGVVRNLAAGVKSLKQHIY
FT                 NPELLGMLLQKLPQYQVMMWGRHITECGIHDPTVLDFAAWVEQTGKYASSI
FT                 NCTLTAGGFFDASQHGQSNVRSDTRKGESKKCGVCHKEVHDVTMCDAFKSA
FT                 DPKRRFQTAIDLKLCFCCLRTHIGRCDKRQKCPVEGCTRYHHALLHKAEIA
FT                 TAATPLSIPQNKPSVNVMKTDHRVFTQALLKILTVKIRGPKGVIEIPTLID
FT                 EGSNMTILDAGVAKILGISGSNKRLCFTLMSGLKQVDENSEDVQIEVGENQ
FT                 ADKPFFNLTGVRTVWKLNLAGQKANVPELLSRYPYVNRADLKCLNGESPLL
FT                 LIGQPHINVIKTTEVYQSDATAPAISKCPLGWVVHGPVMVNTNEEYSGTVN
FT                 LCCDADENLHDLVTSYIMLESMGVVISKPDRQRSEDDRRALAVMEHSTHFV
FT                 DGQFVVSLPYKNSTPFPESRKMALSRLKCTERKIAKMGIGDKYAEIMQGYL
FT                 EKKYAVPVTDEELKDSRDNLWYLPHFPVENLMKPGKIRIVFDAAAKSNGMC
FT                 LNDVLITGPDLLKSLQGVILRFRRGKIGFVGDIKEMFNRIWISEADSWSQC
FT                 FVYRSSPSEPVETFRMKAMIFGANSSPFIAHYIKNHNAQLHADEYPDACNA
FT                 IVHDHYVDDFLGSEDDELKAAELIQDVIQVHKAGGFEIRNFRCSTKEVLNT
FT                 IPLNLQADTSSSDISDGVHRVLGLLWNSESDCFTFSSNFCKIDSAIITGKR
FT                 VPTKREVLSVVMSIFDPLGFVTPMTIRGRILIQQIWRSGIGWDDQLEDGAR
FT                 KKWLKWLSNLSTITDVRVTRCYSANLRSCDQVELHVFCDASTMAMNAVAYL
FT                 RVVKAEKIDVSFVASRGRVAPVRFMSIPKLELQAALLGYRLSLMIKEEMGV
FT                 QVHKTVYWTDSRTVLCWLKTKKALKTFVANKVGEILEQSSPDDWLYVTTLE
FT                 NVADEGTRDAEELDISTTGRWFTGPNMLKQNVTDWSTMVANDHAFEADIDE
FT                 FCSETPVVNTVMESESILPDVNRFSXWRRSIRSTAYVRKFIDMCKRKSSIK
FT                 QIQPCEEXXAICLWLKAVQNEQFPEDYTVLMNRGELKPSSKLKSLAPFLDN
FT                 EGIMRVGGXLNKANVEPGVKNPIILGASGRFVSLLVQNYHQEAHHQGRELV
FT                 LNEIRQTYWIIGLRSLLRKVVFGCQYCRVRKPKQVTPIMGQLPECRLDMYK
FT                 LPFTHTGMDXFGPFDVTVGRRREKRYGVVFTCMTTRAVHVEVAHSLTADSC
FT                 IMSIRRMMARRRKPDFIYSDNGTNLRGADRELEEALNQLSFGDIEREVLTR
FT                 GIQWMFNPPAASHMGGSWERVIRSIRTSLRETLKERAPRQEVLETLLVEAE
FT                 HLVNSRPLTYVSSDVNDCEALTPNHXLIGASSNVQSPGAFSQSDLDWGKQW
FT                 RMAQKLIDNFWKRWMEECMPTLIPRQKWRQSIGEVREGDVVYVSDMINERG
FT                 KWPLAIVERCWTGDDNIVXVAEVRTHSGVYRRPCTKLKKICLEGDIRDDKP
FT                 VSHQGR"
XX
SQ   Sequence 5856 BP; 1723 A; 1155 C; 1504 G; 1466 T; 8 other;
     taagtggtcc ttcgacgacg aatatatgcg aagtggacaa cagtttatga gagaaggctg        60
     agaaatgaaa gtttttgctg acggtggagt aatggccgac aggatcgacg ctgcgaggcc       120
     tgtcgatctg gttctgctgc acaagattct gtattgtgat gacacgacgc tgaattggat       180
     aaggaggaga gtactgcggt tcgaaggctt tgatttcgaa cgacgatctc ctcagtttga       240
     ggttaggatg cgaatcatcg aagatgcaga accagaacat gtacaaacta cgtgtgaaat       300
     attggatgtt ccaatcggag atgcggcttg ttcgaaacaa aatgttgcag tagccatcat       360
     ggagcgacta ttttcgatga ccgatgaagc caagaatgtg ttggagaaag agccatcgcg       420
     aacgctgacg ccgccaccaa tgtcgttgat ggcacaaact acggagtacg gattttcgat       480
     gcaatctcag cgaccaggag gcgaccagag aggcgtttcg attacaagaa gtgtatcttc       540
     ttctaaaagt gttcaagtaa cagtgatgaa ggcaaaactg gaaacggaaa gaaaattagc       600
     gcagctggaa gagcaagaag caaaaaccag aatggagagg cagcagaagc tacttaaagc       660
     tgaactggag ttgaaaattg cggaagcaga gctgaatgaa gaattggttg agcagcggga       720
     tgtagatcct tgtttgatag ttcacgatgc tgacccccta gatcgtgtac agcagtggat       780
     acagaactta caactgaaat ccagttccac ttcctcacaa gagtcgattt cacaacagct       840
     cagggcaagc tcaacgcccc tgctgaagtc gagctttcaa ccaagggatc tcgtgataaa       900
     cgagcaacca ccaattctat ccagttcaac cggaacagct aatgtgcagc gagaccacgg       960
     agagcaactt ggagatgtca acgccgaaat gttacaaatc accaaatcta tgcagcgcat      1020
     gctagcacga agcgcgggta gcaacaacct accagtcttt gatggaaatg ttcgtgaatg      1080
     gcagctgttc ataaaccaat accgtttgtc tacagaagcg ggagaatatt caggaatcga      1140
     gaatgtagtg cggctcaaca aatgtctagt cggaaaggcc cgtgaagctg ttctccatat      1200
     gctgatgtcg tccgtagacg gtgaggaaat aataaaggca cttgaactac gcttcggtag      1260
     accagaactg ctccttcgtg ctttaatcga cgaagtcaag tattttccag tggtgtctga      1320
     ctggtcgaca ttcatcgagt tcgatggtgt agttcggaac ctagctgcag gggtgaaaag      1380
     tttgaaacag cacatctaca acccagaact tttgggaatg cttcttcaaa agctgccgca      1440
     ataccaagtg atgatgtggg gtcgtcatat tacggagtgc ggtattcacg atccgactgt      1500
     attggatttt gcagcgtggg tggagcaaac tggaaaatac gcttcatcca taaattgcac      1560
     attaactgct ggtgggtttt ttgacgcatc tcaacacgga caatcgaacg taagaagcga      1620
     cactagaaaa ggcgaatcga aaaagtgtgg ggtttgccac aaagaagttc atgatgtgac      1680
     aatgtgtgat gcgttcaagt ccgctgatcc aaagcgtaga ttccaaaccg cgattgattt      1740
     gaaactatgc ttttgttgtt tgcgtactca cattggacgg tgtgacaaac ggcaaaagtg      1800
     tccagtggaa gggtgcactc ggtatcatca tgcgttgttg cataaggccg aaatagcaac      1860
     agcagcgaca cccctctcta ttccgcaaaa taaacccagc gttaatgtaa tgaaaaccga      1920
     tcaccgagtc ttcacccaag cgttgttgaa gatattgacg gtaaagattc gcggccccaa      1980
     aggtgtaatt gagataccca ccctgatcga tgagggatcg aatatgacga ttttggatgc      2040
     aggtgttgcc aagatcctag gaatatctgg aagcaacaaa cggctttgtt tcacattgat      2100
     gagtggattg aaacaggtgg atgaaaactc agaagacgtt caaatcgaag ttggtgaaaa      2160
     ccaggcggat aaaccattct tcaaccttac cggagttagg acagtttgga agcttaatct      2220
     ggctggtcaa aaagcaaacg taccagaact attgtcgcga tatccatatg tcaacagagc      2280
     tgatttgaag tgcttgaatg gggaatctcc attattgctg attggacaac ctcatatcaa      2340
     cgttatcaag acaactgaag tctatcaatc tgatgccact gccccagcta tttcgaaatg      2400
     ccctttgggg tgggtagtgc acggaccagt gatggtaaat acgaatgaag agtattctgg      2460
     tactgttaat ctctgctgtg atgctgatga gaatctacat gacctggtga catcgtatat      2520
     tatgctagag agcatgggag ttgtgatcag caaaccggat cgacagcgtt cagaggatga      2580
     tagacgtgct ttggcagtca tggaacactc tactcatttc gtggatggac agttcgttgt      2640
     gagtctaccc tacaagaact caactccgtt cccagagagc aggaagatgg ctttatctcg      2700
     tttaaagtgt actgaacgta aaattgccaa gatgggaatt ggtgataaat atgctgagat      2760
     aatgcaaggc tatctggaga agaagtatgc tgttcctgtt acagacgaag agcttaaaga      2820
     ttcgagagat aatctttggt atctgccaca ttttcctgtc gagaacttga tgaagccagg      2880
     caaaattcga attgtatttg acgctgctgc gaagtcaaat ggcatgtgct tgaacgacgt      2940
     gctcatcacc ggaccggatc ttctaaaatc gttgcaagga gtgattctac ggttccgccg      3000
     gggaaaaatt ggattcgttg gtgacattaa agaaatgttt aatcggatct ggatctctga      3060
     agcagacagt tggtctcaat gttttgttta tcgaagcagt cccagtgagc ccgtggaaac      3120
     ttttcggatg aaagcaatga tttttggcgc taattcatct ccatttatcg ctcactacat      3180
     aaagaatcac aacgcacagc tccatgccga tgaataccct gatgcttgca atgctatcgt      3240
     gcatgatcat tatgttgatg attttttggg aagcgaagac gacgagttga aggctgcgga      3300
     attaatccag gacgtaatcc aagtacataa agccggtggg ttcgaaattc gaaattttcg      3360
     gtgcagcacg aaagaggttt tgaacaccat accacttaac ctgcaagcag acacgtccag      3420
     ttcagatatt agtgacggag tgcatcgagt tcttggttta ctatggaata gtgagagcga      3480
     ctgcttcact ttctcctcca acttctgcaa gattgattca gctataatca caggcaagcg      3540
     cgtaccaacc aaacgtgaag ttttgtctgt ggtgatgtca attttcgacc cacttggatt      3600
     cgtcacccca atgacgatta ggggaaggat tttaattcaa caaatctggc gcagtggtat      3660
     tggatgggat gaccagctgg aggatggagc taggaaaaag tggttgaaat ggttgagcaa      3720
     tctttcgaca atcacagatg ttcgcgtcac ccgttgttac agtgctaatc ttcgtagttg      3780
     cgatcaggtc gaactgcatg tgttttgtga cgcaagcacc atggcaatga atgcagtagc      3840
     ctacttgaga gttgtgaaag ccgaaaaaat tgatgtttcc tttgtcgctt caagaggaag      3900
     agttgctcca gtacgtttta tgtcaattcc aaaactagaa ttgcaagctg ccttactggg      3960
     ttaccgcctt tctttgatga tcaaagaaga gatgggcgtt caagtgcaca agactgtgta      4020
     ctggactgat agtcgcacgg tgttatgttg gctgaaaacg aagaaagcat tgaaaacatt      4080
     tgttgcaaat aaagttggag aaattttgga acagtcgtcc ccagacgatt ggctttatgt      4140
     caccactctg gaaaacgttg ctgatgaggg aacacgagat gcggaagagc tggatatttc      4200
     tacgactgga aggtggttca ccggaccgaa tatgctgaag caaaatgtca ccgattggtc      4260
     aacgatggtt gcaaatgacc atgcattcga agccgatatc gatgaatttt gttccgaaac      4320
     accagtcgtg aacacagtga tggaaagtga gtcaattcta cccgacgtaa accggtttag      4380
     tmaatggaga agatcaatcc gatcgacggc ttatgtacgt aagttcatcg atatgtgcaa      4440
     gcgtaaatcg agtatcaagc aaattcaacc gtgtgaagaa cakakagcta tttgtctatg      4500
     gctgaaagca gtgcagaatg aacaattccc tgaagattac actgttttga tgaatcgcgg      4560
     tgaattgaag ccgtcaagta agctgaagtc gttagcacct tttttggaca atgaaggaat      4620
     aatgcgtgtc ggagggakac tgaacaaggc aaacgtggaa ccaggtgtaa agaatccaat      4680
     catacttgga gcatcgggga gatttgtatc tttgcttgtt cagaattatc atcaagaagc      4740
     tcatcatcag gggcgtgaac tcgtattgaa cgaaatcagg caaacctatt ggataatagg      4800
     cttacgaagt ttgctgcgaa aagttgtttt cggatgtcag tattgtcgtg tcagaaagcc      4860
     caagcaggtt acgccaatca tgggacaact tccggaatgc cgtttagata tgtataagct      4920
     tccttttacg cataccggaa tggattkttt tgggcccttc gatgttacgg ttggacgacg      4980
     tagagaaaaa cggtacggag tggtttttac ttgtatgacg actagagccg tccacgttga      5040
     agtggcccac tcgttgactg cagattcgtg tataatgtcc attcgacgaa tgatggcgcg      5100
     acgcaggaaa ccggatttca tctactctga taacggcaca aatttgcgcg gtgctgatag      5160
     agagttagaa gaagcactca accaactgag cttcggagac atcgagcgtg aagtgttgac      5220
     aagaggcata cagtggatgt tcaacccccc agctgcgagt catatgggtg gatcatggga      5280
     aagggttatt aggagcatca ggacatctct aagagaaaca ttgaaggagc gagcaccgag      5340
     gcaagaagtc ttggaaacgt tactagtaga agctgaacac ctcgtcaata gtcgtccttt      5400
     gacttatgta tcatctgatg tcaatgactg tgaagcgctm acccctaatc atkttttgat      5460
     tggagcatcg agtaatgttc agtcaccagg agcgttcagc caaagcgatc tcgattgggg      5520
     aaagcagtgg aggatggcgc aaaaactcat cgacaatttc tggaaacgat ggatggaaga      5580
     gtgtatgccg actctgattc cgagacaaaa atggcgacaa tccattggag aggtgagaga      5640
     aggtgatgtc gtatacgtat cggatatgat aaacgaacgt ggcaagtggc ccctggcaat      5700
     tgtggaaagg tgttggacag gtgatgacaa catagtawga gttgctgaag tcagaaccca      5760
     ctccggagtt tatcgccgac catgcaccaa gctgaagaag atctgtttgg aaggagacat      5820
     tcgtgatgac aaaccagtgt cacaccaggg gcgcaa                                5856
//
ID   BEL-170_AA-I repbase;    DNA;    INV; 2371 BP.
XX
AC   supercont1.309;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-170_AA_;
KW   BEL-170_AA-LTR; BEL-170_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2371
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.309; Positions  648903  651273.
XX
CC   'CCCCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(65..1318,1322..2371)
FT                 /product="BEL-170_AA-I_1p"
FT                 /translation="MKVFADGGVMADRIDAVRPVDLVLLHKILYCDDTTLN
FT                 WLRRRVLRFEGFDFERRSPQFEVRMRIIEDAEPEHVQTTCEILDVPIGDAA
FT                 CSKQNDAVAYLRVVKAEKIDVSFVASRGRVAPVRFMSIPKLELQAALLGYR
FT                 LSLMIKEEMGVQVHKTVYWTDSRTVLCWLKTKKALKTFVANKVGEILEQSS
FT                 PDDWLYVTTLENVADEGTRDAEELDISTTGRWFTGPNMLKQNVTDWSTMFA
FT                 NDHAFEADIDEFCSETLVVNTVMESESILPDVNRFSQWRRLIRSTAYVRKF
FT                 IDMCKRKSSIKQIQPCEEQRAICLWLKAVQNEQFPEDYTVLMNRGELKPSS
FT                 KLKSLAPFLDNEGIMRVGGRLNKANVEPGVKNPIILGASGRFVSLLVQNYH
FT                 QEAHHHGRELVLNEIRQTYWIIGLSLLRKVVFGCQYCRVRKPKQVTPIMGQ
FT                 LPECRLDMYKLPFTHTGMDFFGPFDVTVGRRREKRYGVVFTCMTTRAVHVE
FT                 VAHSLTADSCIMSIRRMMARRRKPVFIYSDNGTNLRGADRELKEALNQLSF
FT                 GDIEREVLTRGIQWMFNPPAASHMGGSWERVIRSIRTSLRETLKERAPRQE
FT                 VLETLLVEAEHLVNSRPLTYVSSDVNDCEALTPNHFLIGASSNVQSPGAFS
FT                 QSDLDWGKQWRMAQKLIDNFWKRWMKEYMPTLIPRQKWRQSIGEVREGDVV
FT                 YVSDMINERGKWPLAIVERCWTGDDNIVRVAEVRTHSGVYRRPCIKLKKVC
FT                 LEGDIRDDKPVSHQGAQ"
XX
SQ   Sequence 2371 BP; 704 A; 433 C; 630 G; 604 T; 0 other;
     taaatggtcc ttcgacgacg aatatatgcg aagtggacaa cagtttatga gagaaggctg        60
     agaaatgaaa gtttttgctg acggtggagt aatggccgac aggatcgacg ctgtgaggcc       120
     tgtcgatctg gttctgctgc acaagattct gtattgtgat gacacgacgc tgaattggtt       180
     aaggaggaga gtactgcggt tcgaaggctt tgattttgaa cgacgatctc ctcagtttga       240
     ggttaggatg cgaatcatcg aagatgcaga accagaacat gtacaaacta cgtgtgaaat       300
     attggatgtt ccaatcggag atgcggcttg ttcgaaacaa aatgatgcag tagcctactt       360
     gagagttgtg aaagccgaaa aaattgatgt ttcctttgtc gcttcaagag gaagagttgc       420
     tccagtacgt tttatgtcaa ttccaaaact agaattgcaa gctgccttac tgggttaccg       480
     cctttctttg atgatcaaag aagagatggg cgttcaagtg cacaagactg tgtactggac       540
     tgatagtcgc acggtgttgt gttggctgaa aacgaagaaa gcattgaaaa catttgttgc       600
     aaataaagtt ggagaaattt tggaacagtc gtccccagac gattggcttt atgtcaccac       660
     tctggaaaac gttgctgatg agggaacacg agatgcggaa gagctggata tttctacgac       720
     tggaaggtgg ttcaccggac cgaatatgct gaagcaaaat gtcaccgatt ggtcaacgat       780
     gtttgcaaat gaccatgcat tcgaagccga tatcgatgaa ttttgttccg aaacattagt       840
     tgtgaacaca gtgatggaaa gtgagtcaat tctacccgac gtaaaccggt ttagtcaatg       900
     gagaagatta atccgatcga cggcttatgt acgtaagttc attgatatgt gcaagcgtaa       960
     atcgagtatc aagcaaattc aaccgtgtga agaacagaga gctatttgtc tatggctgaa      1020
     agcagtgcag aatgaacaat tccctgaaga ttacactgtt ttgatgaatc gcggtgaatt      1080
     gaagccgtca agtaagctga agtcgttagc accttttttg gacaatgaag gaataatgcg      1140
     tgtcggaggg agactgaaca aggcaaacgt ggaaccaggt gtaaagaatc caatcatact      1200
     tggagcatcg gggagatttg tatctttgct tgttcagaat tatcatcaag aagctcatca      1260
     tcatgggcgt gaactcgtat tgaacgaaat caggcaaacc tattggataa taggcttatg      1320
     aagtttgctg cgaaaagttg ttttcggatg tcagtattgt cgtgtcagaa agcccaagca      1380
     ggttacgcca atcatgggac aacttccgga atgccgttta gatatgtata agcttccttt      1440
     tacgcatacc ggaatggatt tttttgggcc cttcgatgtt acggttggac gacgtagaga      1500
     aaaacggtac ggagtggttt ttacttgtat gacgactaga gccgtccacg ttgaagtggc      1560
     ccactcgttg actgcagatt cgtgtataat gtccattcga cgaatgatgg cgcgacgcag      1620
     gaaaccggtt ttcatctact ctgataacgg cacaaatttg cgcggtgctg atagagagtt      1680
     aaaagaagca ctcaatcaac tgagctttgg agacatcgag cgtgaagtgt tgacaagagg      1740
     catacagtgg atgttcaacc ccccagctgc gagtcatatg ggtggatcat gggaaagggt      1800
     tattaggagc atcaggacat ctctaagaga aacattgaag gagcgagcac cgaggcaaga      1860
     agtcttggaa acgttactag tagaagctga acacctcgtc aatagtcgtc ctttgactta      1920
     tgtatcatct gatgtcaatg actgtgaagc gctaacccct aatcattttt tgattggagc      1980
     atcgagtaat gttcagtcac caggagcatt cagccaaagc gatctcgatt ggggaaagca      2040
     gtggaggatg gcgcaaaaac tcatcgacaa tttctggaaa cgatggatga aagagtatat      2100
     gccgactctg attccgagac aaaaatggcg acaatccatt ggagaggtaa gagaaggtga      2160
     tgtcgtatac gtatcggata tgataaacga acgtggcaag tggcccctgg caattgtgga      2220
     aaggtgttgg acaggtgatg acaacatagt aagagttgct gaagtcagaa cccactccgg      2280
     agtttatcgc cgaccatgca tcaagctgaa gaaggtctgt ttggaaggag acattcgtga      2340
     tgacaaacca gtgtcacacc agggggcgca a                                     2371
//
ID   BEL-170_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   supercont1.309;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-170_AA_;
KW   BEL-170_AA-I; BEL-170_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.309; Positions  648676  648902.
XX
SQ   Sequence 227 BP; 76 A; 42 C; 48 G; 61 T; 0 other;
     tgtaagggaa cgtaaaagct ctctgctatc aacttgtcga atggtcggac aaaaggagta        60
     tccctagcag aaaagtagaa aaaaaaaaag ttggcacccc tcgaattccg ccagcttatg       120
     agttaagtat ttcgcgatcg cgggcgcacc agacgccatt attttgtatt tttcgcaatc       180
     gtatcaaata aatatgtaaa acagataaaa tgtgtttggt tgttaca                     227
//
ID   BEL-171_AA-I repbase;    DNA;    INV; 6278 BP.
XX
AC   supercont1.315;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-171_AA_;
KW   BEL-171_AA-LTR; BEL-171_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6278
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.315; Positions 1017538 1023815.
XX
CC   'CAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..6227
FT                 /product="BEL-171_AA-I_1p"
FT                 /translation="MEGHHGQLEYSCKSCSRRDTSEAHMLICDQCRLWEHY
FT                 ICAGVSETTPRRPFVCKQCQDKDRGSTISTRLRSHAKRVPSAKTSQGKPTS
FT                 NVESKVSSIGSSSRSSIVKARLQLIEEEERLKQRELEEEEILKELEHVEAQ
FT                 RQLEQKKKQMEEQKKLMEEESILRQRKLEADKARLMKQHMIRRESLEKKNE
FT                 ILLQISERGSIVESATSSREKVSSWLTKHLPKGTTGEKALEIDHRTELISP
FT                 APETVPSMTIEVPINRASKSETGALHSKRQATNPQSFTLGLTVADPIPRVT
FT                 KTIRGVQSTTVREPFQRFVACSRPSQSQPVAALSCPPVTHQACTPYKEAGC
FT                 SALPTNYQQGASWSTPIRYVANPQTATQRSTTSPNVYRGPTEECHHPLEFP
FT                 DRVPMFTNVAGNNYLQNGLPGMLSSQQIAARQVVGKDLPHFSGDPTDWPMF
FT                 ISSFEQATITCGYSNAENLVRLQRCLTGHAREAVRSRLLLPANVPHVISTL
FT                 RTLYGRPELLIRSLHDKIRRTPGPKHDRPESILEFGLAVQNFVDHLQAAEQ
FT                 EEHLSNPMLMQELVEKLPGPMRMDWASYKNLQPRATVLTFGEFMSKLVLAA
FT                 SEVSFELPGLTKVREFDKQQRPREKARIQAHSADGNPYPIHETESAKKPSK
FT                 MCRYCDREGHRVADCSKFIQLCLDERWKQVQDRDLCRTCLNNHGKWPCKSW
FT                 KGCSVEGCRLKHHTLLHSPSVPSSTSHSVNVSANKLPAGDGETLFRILPVM
FT                 LYANGKNVMVFAFIDEGSQITMLEEKIAKELGITGPRKPLTLQWTGNVKRN
FT                 ELRSEEVSLEIAGKHNGNRYELRYARTVSRLHLPAQKLNYTEMTACFPHLK
FT                 GLPIADYDLVQPKLLIGLDNLRLGVPLKLREGGSSDPIAAKCRLGWSIYGR
FT                 ASRESAPRAIVNFHTAAVASPDDLMNEQLRDFFTLENNGVAAPNVKLESDE
FT                 DNRARQILEATTRRTTNGFETGLLWKVDDPQFPNTYPMAMRRMKSLEKKLI
FT                 GNRALAQRVSEQILDFERKGYIHKLTESEFSTVDPRKTWFLPLGVVINPKK
FT                 PGKIRLIWDAAAKTGEVSFNSYLLKGPDLLTPLPRVLSGFRLFPIAVSGDI
FT                 REMFLQIKLQAKDRNAQMFVFRHNPEEPIQVYAIDVTMFGSTCSPSSAQFV
FT                 KNLNAEQYALHYPRAAVAIKEHHYVDDYLDSFRTIEEAVQVVNDVKFVHSK
FT                 GGFEIRNFLSNEGEVLKRTGEIEPDSSKEFALVRGETTESVLGMKWIPVDD
FT                 VFTYTFAMRDDLRSILVETHVPTKREVLKVIMSLFDPLGFVSFFLVHGKIL
FT                 MQDVWASGIGWDEKINDQLFLRWQQWTAYFSQLDTMRIPRCYFSSPFPKNL
FT                 DRLEVHILVDASDTAYACVAYYRLETENGIQMALICAKTKVAPLKVLSIPR
FT                 LELKAAILGVRMLEAIQGFHTYAIHRHFLWSDSSTVLAWIRSEHRRYNKFV
FT                 AVRIGEILTTTEVRDWRWVPSGLNTADLATKWKNEPNFTSGNPWLSGPSFL
FT                 HQPEEFWPQQTLIATTCEELRPNHTHTTIPPLIDASRFSRWSCLQRTMAFV
FT                 LRFIENLRRKRNGDKVLVDRFSQNELNRAETAVLKVAQAEAYSEEINILSE
FT                 TQGPPDARHRRVSKGSPIYKNWPFLDEHGVLRQRGRIGAASFAPIEAKFPA
FT                 ILPRQHPITFLITDWYHRRFRHANRETIVNEMRQRFEIAKLRALIAKVTKN
FT                 CMMCRVKNAQPYPPAMAPLPAARLQPFIRPFTSVGVDYFGPVLVKVGRSSV
FT                 KRWVALFTCLTVRAVHLEVVHSLSTESCIMAVRRFVARRGCPAEFYSDNGT
FT                 CFQGASKELQREETIKRNNALANTFTTSKTRWCFIPPAAPHMGGAWERLVR
FT                 SVKVAIGSLADVSRKPNDEVLETVLLEAEALINSRPLTYIPLESADQEAIT
FT                 PNHFLLGSSNGDKLLPVDDFDSPMILRSSWKLARAIAQQFWSRWVKEYLPV
FT                 ITRRSKWFEEGRDLTVGDLVLVVDGTVRDQWIRGRIEAVMPGRDGRVRQAL
FT                 VRTASGVLRRPAVKLAVLDVLSNGEPGSAVLAEHGRD"
XX
SQ   Sequence 6278 BP; 1767 A; 1501 C; 1566 G; 1444 T; 0 other;
     caacatccta aaagattatt tgtacgtggg tagacaggat ggaaggacat cacgggcaat        60
     tagaatattc atgtaaatct tgcagtcggc gagacacttc ggaagcgcat atgctaattt       120
     gcgaccagtg tcggttgtgg gagcattaca tttgcgccgg tgtgagcgag acgacaccga       180
     ggcggccgtt tgtctgcaag cagtgccaag acaaggatcg aggttcaact atttctaccc       240
     gactacgttc ccatgcaaaa cgtgtaccat ccgctaagac atcgcagggt aagccaacct       300
     ccaatgtaga aagtaaagtt tcgtcgatag gctcaagcag tcgttcgtca atcgtgaagg       360
     cacgtctgca actgatcgag gaggaagaga gattaaagca aagggagctt gaagaagaag       420
     aaatcctcaa ggaacttgaa cacgtagagg ctcaacggca gttggaacaa aagaagaagc       480
     agatggagga gcagaaaaaa ctaatggaag aagaatcgat actacgtcaa cgaaaactag       540
     aagcggacaa ggcacgtttg atgaaacaac atatgatccg cagagaatcg ctggaaaaga       600
     agaacgaaat cctgctgcag atttccgaac gaggcagcat tgtagaatcc gccactagct       660
     ctcgagagaa ggtatcgagc tggctgacga aacatttacc taaggggaca accggtgaga       720
     aagcactcga gatagaccac cgaactgaac tgatttctcc ggcccctgaa acggttccgt       780
     caatgaccat cgaggtgcca atcaacagag catccaagtc agaaaccggt gcactccatt       840
     cgaaacgtca agcaacaaac cctcaaagtt ttactctcgg tttgactgtt gcggatccca       900
     ttcctcgagt taccaaaacg atcaggggtg tacaatcaac cacagtccgt gagccgtttc       960
     aacgttttgt ggcttgttcg aggccgtcac agtcacaacc cgttgcagca ttatcgtgtc      1020
     ccccggtgac ccatcaggct tgtacgccat ataaagaggc aggatgttcg gcgcttccga      1080
     cgaattatca gcaaggagcg tcatggagca ctcctattcg ctatgtggct aatccccaaa      1140
     cggcaacgca gaggtcaaca acatcgccta acgtgtaccg cggaccaact gaggagtgtc      1200
     atcatccgtt ggagtttccc gatcgtgttc ctatgttcac caatgtagct ggaaataact      1260
     atctacagaa cgggctacca gggatgctta gttcacaaca aatcgcagca aggcaggtcg      1320
     tcggtaaaga tctacctcac ttcagtggtg atccgaccga ctggccgatg tttattagca      1380
     gttttgaaca ggccacgatt acatgtggat actcgaacgc tgagaacctt gttcgtctcc      1440
     aaagatgttt aactgggcac gcaagagagg cagtacgtag tagactttta cttcctgcca      1500
     atgttccgca tgtgatcagc actctacgca cactttacgg tcgccccgag ttgctgatcc      1560
     gatcgttgca tgataaaatt cgaagaactc cagggcccaa acacgatcgt ccagaatcga      1620
     tcctggaatt cggattagcg gttcagaact tcgtcgatca tctccaagca gcggaacaag      1680
     aggaacattt gtccaatcct atgcttatgc aagaattggt cgagaaactg ccagggccca      1740
     tgaggatgga ttgggccagt tacaaaaatt tacagccacg ggccaccgtc ctgacattcg      1800
     gagagttcat gtccaaacta gtattagcag ccagcgaagt aagtttcgag cttccgggac      1860
     tcacgaaagt gagggaattc gataagcaac aacgaccaag agagaaggcg aggatacaag      1920
     cacactcggc cgacggtaat ccgtacccca tacacgaaac agaaagtgcg aagaaaccat      1980
     cgaaaatgtg tcggtactgt gatcgtgaag gtcatcgagt tgccgattgc tcgaagttca      2040
     tacaactatg tctagatgag cgttggaaac aagtgcaaga tagggatctc tgtcgaacgt      2100
     gcttgaacaa ccatggcaaa tggccatgca aatcgtggaa ggggtgcagt gttgaaggat      2160
     gtcgattgaa acatcatact ctcctccatt caccttccgt accttcatca acaagccact      2220
     ctgtgaatgt ttcagcaaat aaacttccag cgggcgacgg cgaaacgttg ttcagaatat      2280
     tgccagtcat gctctatgca aacggtaaaa atgtaatggt tttcgcattt atcgatgagg      2340
     gatcacagat aacgatgcta gaggagaaga tagccaagga acttggcata actggtcctc      2400
     gaaaaccact tacactacaa tggacaggga acgtgaagcg taacgagctg agatcagagg      2460
     aggtcagttt agaaatagcg ggaaaacaca atgggaaccg ctacgaactt cgttatgcgc      2520
     gtacagtcag ccgtttgcat cttccagcac agaagttgaa ctacacggaa atgaccgcgt      2580
     gtttcccgca tctcaaagga cttccgatag cggattatga cctggtgcag ccgaagctac      2640
     taatcggcct agataatctt cggctcggtg taccgctgaa gctacgagag ggaggatcat      2700
     ccgatcctat agctgcaaaa tgccgattag ggtggagtat ttatggccgt gcttcaaggg      2760
     aaagtgctcc aagggcgatt gtaaacttcc ataccgcagc agtggcaagt ccagatgacc      2820
     taatgaacga acagctgagg gatttcttca cgttagaaaa caatggagtc gccgctccaa      2880
     acgtgaagct cgagtcagat gaagacaaca gagcgcgaca gatactagaa gcgacgacac      2940
     gacgcactac taatggtttc gaaacaggtc ttctgtggaa agtcgatgac ccacaatttc      3000
     caaacaccta tccgatggct atgcgacgaa tgaaatcgtt ggaaaaaaaa ttgataggga      3060
     atcgagcgtt agcgcagcga gtaagtgaac agatccttga cttcgaacgg aagggatata      3120
     ttcacaaatt aaccgaatca gaattctcca ctgtcgatcc tcgaaagaca tggtttcttc      3180
     ccctcggagt cgtcatcaac cccaaaaagc caggaaaaat tcgattaatt tgggacgctg      3240
     ctgcaaagac tggggaagtt tctttcaact cgtacttgtt gaaagggcca gaccttctta      3300
     ctcctctgcc aagggtgctc agtggcttcc gtctgtttcc cattgcagta tctggagata      3360
     tcagggagat gtttcttcaa atcaaactgc aggcaaagga cagaaacgct cagatgttcg      3420
     tgttccgtca taatcccgag gaacctattc aagtttacgc gatcgatgtg acgatgtttg      3480
     gttccacgtg ctctccgtcc tctgcgcagt tcgtcaagaa cttgaacgcc gaacagtacg      3540
     cgctacatta ccctcgtgct gcggtggcta ttaaggagca tcactacgtg gatgactacc      3600
     tggatagctt taggaccatc gaggaagctg tgcaggtagt gaacgacgtg aagtttgtcc      3660
     attcaaaggg tggattcgaa atacgcaact ttttatccaa cgaaggcgaa gtcttgaaac      3720
     gaactgggga gatcgaacca gattcgtcaa aagaattcgc tcttgtccgt ggggagacta      3780
     ccgaatctgt tctcgggatg aaatggattc cagtggacga cgtttttacg tacacctttg      3840
     caatgcgtga cgatcttcga tcaatcctcg tagaaactca cgtaccgaca aaacgagaag      3900
     ttctgaaggt aatcatgagc ctttttgatc cgttagggtt tgtctcgttt ttcttagtcc      3960
     atggcaagat attgatgcag gatgtttggg cttcgggcat cggctgggat gaaaagatta      4020
     acgatcaact tttcctacga tggcaacaat ggactgcata cttttcacaa ctagacacca      4080
     tgcggatacc gcgctgttat ttcagttctc catttcccaa aaacctcgac cgcttagaag      4140
     tccatatcct cgtcgatgca agtgacactg cctatgcctg cgtggcatac taccgattgg      4200
     aaactgagaa tggaatccaa atggcactca tatgcgcaaa aacgaaggta gcacccttga      4260
     aagttctatc aattcctcgg ctagaactaa aggcggcgat cctaggtgtc cggatgttgg      4320
     aagctattca aggattccac acttatgcta tccaccgtca ttttctctgg agtgattcaa      4380
     gtaccgtctt ggcttggatc agatcagaac atcgtcgata caacaagttc gttgccgtcc      4440
     gaattggtga aatccttacg acaaccgaag ttcgagactg gagatgggtc ccctccggat      4500
     tgaacacagc cgatctcgcc acgaaatgga agaatgaacc taactttact tcgggtaacc      4560
     catggctaag tggaccatcg ttccttcacc agccggagga attctggcct cagcaaaccc      4620
     tgattgccac tacttgtgaa gaacttcgac cgaatcacac ccatactaca attccaccgc      4680
     ttatcgatgc gtctcgattc agcaggtggt catgtcttca acgaacgatg gcgtttgtac      4740
     ttcggttcat agaaaactta cgccgtaaac ggaatgggga caaagtacta gtagatagat      4800
     ttagccagaa cgagttaaac cgcgctgaga cagcggtttt gaaagttgca caagccgaag      4860
     cctattccga agaaattaat attctgtcgg agacacaggg acctccggac gcacgacacc      4920
     gacgtgtttc aaagggtagt ccaatctata agaactggcc tttccttgac gaacacggag      4980
     tattacgcca acgtggcaga atcggggccg catcgtttgc gccaatcgaa gctaagttcc      5040
     ccgctattct tcctagacaa catccaataa cattcctcat tacagactgg taccatcgcc      5100
     gtttccgcca cgccaaccga gaaaccatcg tcaatgagat gcgacaacgt ttcgagattg      5160
     ccaaactacg tgctcttatc gcgaaggtca caaaaaactg catgatgtgt cgagttaaaa      5220
     acgcccagcc ctatcctcca gcaatggcac cgctccctgc agcacgacta cagccgttca      5280
     ttcgtccttt tacctcagtt ggggtagatt acttcgggcc agtactagtg aaggttggga      5340
     ggagctcagt gaagagatgg gtggccttgt ttacatgtct cactgttcgc gcagtgcatt      5400
     tggaggtagt ccatagtttg tctaccgaat cctgcattat ggcagtgcgg cgcttcgtag      5460
     cacggcgtgg atgtccggct gaattttatt ccgacaacgg gacatgtttc caaggtgcaa      5520
     gcaaggagct gcaaagggag gagactataa aacgtaacaa cgcccttgca aatacgttca      5580
     cgacctccaa gacacgttgg tgtttcatcc caccagctgc tcctcatatg ggaggtgcat      5640
     gggagcggct agtgaggtca gtaaaggtag cgataggctc cctagctgac gtgtcacgta      5700
     aaccaaacga tgaagtcctc gaaacagttc tactcgaagc tgaggctttg attaactcgc      5760
     gacctctcac ctacatccca ctagaatcag cggaccagga ggccatcacg cctaatcatt      5820
     tcctcctcgg gtcttcaaac ggcgataagc ttctaccagt ggacgatttc gatagtccta      5880
     tgattcttag aagtagttgg aaacttgcac gagccatagc gcagcagttc tggtcaagat      5940
     gggtcaaaga atacctaccg gtgatcacac gacggtcgaa atggtttgaa gaaggtcgag      6000
     acttgaccgt aggagatttg gtgttggttg tggacggaac ggtgagggac cagtggatac      6060
     gaggaaggat agaggccgta atgcccggcc gtgatggaag agttcgacag gcattagtcc      6120
     ggacagcatc cggagttttg cgtcggccag ctgttaaact tgcagtacta gacgtgctga      6180
     gtaatggtga acccggatcc gcagttcttg cggaacatgg tcgtgactag ggttcacggg      6240
     aggggggatg tcacgttacc cccctgctac agctcaac                              6278
//
ID   BEL-171_AA-LTR repbase;    DNA;    INV; 667 BP.
XX
AC   supercont1.315;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-171_AA_;
KW   BEL-171_AA-I; BEL-171_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-667
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.315; Positions 1016871 1017537.
XX
SQ   Sequence 667 BP; 225 A; 123 C; 116 G; 203 T; 0 other;
     tgtggccgac gaacgctgtg gtctccacag tggccggttg atctataacc aacacatgga        60
     tcgagtgacc ggcatgaaga gataagggaa gatgaactga atggaagaca aacgacataa       120
     aaacaatcca aatttttagt atcagagagt tgaactacgt gctatatgct ttttcctaaa       180
     cttaaaattt ttcgtgaatt tttcatttac cttattatct acttaatatt aaatagtgcc       240
     tacagtacta gtggttaaga acacattgat ttgctacctc atataagtgc gaaggtaaca       300
     atctagtaga attcttatat tgatagattt ataacctaaa gaatatgttc taggttctca       360
     ataagcttag taccatcaga ttgatgtaac gattgaactc cgactagaat ttatatgatt       420
     attgtaagta tttacatgaa ttcgaatttg ataccaactt acccagcgta taactttaga       480
     cgggataaaa tacgtaatca gatccgttaa ggtgatacga cccgacctcc tagaagagtt       540
     caccaaataa tgtaagtagg aaatagcttc ccacaacttt tatgaagcca ataaaattct       600
     ctttagcttt tagcttacca actcaagatc gggtctgctt aaaagaattt ggaaccttcc       660
     cccctca                                                                 667
//
ID   BEL-172_AA-I repbase;    DNA;    INV; 6170 BP.
XX
AC   supercont1.269;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-172_AA_;
KW   BEL-172_AA-LTR; BEL-172_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6170
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.269; Positions 1510876 1517045.
XX
CC   'AATTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6168
FT                 /product="BEL-172_AA-I_1p"
FT                 /translation="MSNASSNPDTIYGCAGCDRPDTADDIVQCDKCAAWWH
FT                 YSCAKVDASVADRTCWMCAKCTTPPPPPRSTTIRTTSSNRRALLAINLQRL
FT                 AEEKELRKKELEISMEKEFVKAKYDLLEQCALDDEAESHSVRDRIEEFEAR
FT                 DRERHVNDWVGQVAASLQKSRSLTDPKILSIPKADSTPADPFHLGKATAVD
FT                 TTKTNVVLDVIDDRLSEVNDRHKNKEPPRRAVVVKRSQNRRDENATANENQ
FT                 KQLEMQLQKCQEISISDHQIIKDLQNQLRRCQLQLQQRSEEPQVPDPQSIW
FT                 PLRDVSRGAVPKSKPTIQTMPAPVESQHEQSRTNFARSTEIDLTSIPQQPQ
FT                 LDNYGSHEQSRTNFARSTEIGLASTPQQTQSSNHGGHEQMRTNFARSAEIG
FT                 LANSPQILQSSSYNQVADSLFLEVRRPSPEQLAARQVMPRDLPDFYGDPEE
FT                 WPLFISSLRNSTSACGYSRVENLARLQRCLKGNALKSVRYNLLDPESVPEV
FT                 IRTLQTLYGRPEVIISKLIKSVRDAPAPKSERLETLIDFGMAVRNLVCHLI
FT                 AADQRSHLSNPVLLQELVEKLPASVKMQWAQHLIQFPDMTLQTFSNFMSSV
FT                 VESVSKVVLYTGSQSHRPEKQRSKEKGYSHAHVEAIEPGQQKIDSPKPCPV
FT                 CGKADHRIKDCDSFKRSSVDSRWKTVSSLKLCRCCLGQHGRRVCRSSARCE
FT                 VDGCQYRHHRLLHPPKQTNSYNASTTNTTESHTYHHCEQSILFRIIPVTVT
FT                 GPSKTIDTFAFLDEGSSATLVEQSLAEQLELQGPVIPLCLKWTADVSRSEE
FT                 RSQIVSLEISESGRARKYRLDNARTVERLNLPTQTLCFEELQEKYQHLAGL
FT                 PIRSYTKAIPRLLIGLRNLSLAVPQKIREGKGGPIAVKTRIGWCVYGNLTE
FT                 NREQNHFSYHICECDAGDKLDNLIREYFDAEDTGLRFTEQIESDEMQRAKS
FT                 ILERTTKRDKNRFTTGLLWKYDHIELPDSFPMALQRLKCLERRMARDPILK
FT                 DNLHKQLKEYEHKGYAHQASTAELNEADPRRTWYLPLGTVVNPKKPTKVRL
FT                 IWDAAAKVDGVSLNTFLLPGPDLLVSLPAVLFRFRLYPVAVCGDIKEMFHQ
FT                 IGVIAADRHAQRFLWRETPEEPPKVFLMDVLTFGSASSPSSAQFVKNRNAK
FT                 EHEAQFPRAAEGIVKCHYVDDYLDSFEDEVDAKLVSEQVRHVHLNGGFEIR
FT                 NWSSNSMVVLEHLGEASKVAMKDLTAAGNGESEKVLGMLWITETDMLCFST
FT                 TFRADIDELIRSKARPTKRQILRTVMSLFDPLGLLASFLVHGKILMQDVWR
FT                 SGIKWDERVDDRTEQRWHNWIELFARVDEIKIPRCYFVTASTERYGTLQAH
FT                 LFVDASEAAYSAVVYFRIIDGEGNPQCSLVTAKTKVAPIKYVSVPRLELMA
FT                 AVLGARLLAFVGDNHTVPIQQRFCWSDSCTVLAWLRSEHRRYKQFVACRVG
FT                 ETLSLTKVNEWRWVPSRLNIADEATKWGKGPCFDADSRWIQGPKFLSLPEE
FT                 HWPRMEPAELLTDEELRPCHLYHEVVTPLIEFERFSNWNRLLRSVAFVFHP
FT                 FTVYKARKLNINVKQGPTHEDLKAAEILIWRTVQSTVYPDEITTMSQNRNL
FT                 PSSQQRPLEKSSPLYKLTPMMDEDGVLRIDSRTGAARVSTFDLKYPVILPQ
FT                 KHHVTRLLIDHYHRKFLHCNAETVVNELRQKFYIPRIRVAVKTESRLCQWC
FT                 KVPKMGPLPEARLSPGVRPFSYIGIDYFGPILVKVGRSSAKRWVCLITCLT
FT                 IRAVHVEVAFDLSTQSCIACIRRFVCRRGAPLEIYSDNGRNFVGADGVLRE
FT                 QMKRIDEEAAATFTNAQTKWCFIPPSAPHMGGSWERLVRSIKAALINIPQD
FT                 RKLDDEALLTYLAEAESIVNSRPLTYLPLDTPEQEALTPNHFLLGSSSGVK
FT                 QPTRDLGCPTRLLRNTWDTLQVAIDQFWQRWIREYLPTLTRRTKWFGDHKS
FT                 VDSGDLVVIIEDMKRNGWVRGRVLEVIKGKDRRIRQAVVQTSSGVFKRPVS
FT                 KLALLDVAVSSKADVDTHPYGEG"
XX
SQ   Sequence 6170 BP; 1730 A; 1502 C; 1555 G; 1383 T; 0 other;
     aaactctaag aaattcgacc gatgtcgaat gcaagctcca atcccgatac catctatgga        60
     tgcgctggct gcgatcgccc cgatactgcc gatgatatcg tgcagtgtga taaatgtgct       120
     gcttggtggc actattcctg tgccaaggtc gacgcatccg tagcagatcg cacttgctgg       180
     atgtgcgcca aatgtacgac cccaccgcca cctccgcgat ctaccacgat cagaacgacg       240
     tcatcgaatc ggagagcctt gctagccata aacctacagc ggctcgccga agagaaggaa       300
     ctgcggaaaa aggaattgga gatcagcatg gagaaagagt tcgtgaaggc caaatacgat       360
     ctactggagc agtgtgcgtt agatgatgaa gccgaatctc acagcgtacg cgatcgaatc       420
     gaagaattcg aagcccgaga tcgagagagg cacgttaacg attgggtagg tcaagtagca       480
     gcgtcgctcc agaagagcag atcgctcact gacccgaaga tcctctctat tcccaaagcc       540
     gacagtactc ccgccgatcc tttccacttg ggaaaagcga ccgcagtaga cacaacaaaa       600
     acaaatgttg tactcgacgt aatcgatgac cgattgagcg aggtgaatga ccgccacaaa       660
     aataaagagc cacctagacg cgctgttgtt gtgaaacgga gccaaaacag acgagatgaa       720
     aacgcaacag ccaacgaaaa tcaaaaacaa cttgaaatgc agcttcaaaa gtgccaggag       780
     atttccatca gtgatcacca gatcataaaa gatttacaaa atcagcttcg tagatgtcag       840
     ctgcaactgc agcagcgcag tgaggaacca caagtacctg atccgcagtc gatttggccg       900
     ttacgagacg tttcaagagg agcagttccg aagtcaaaac cgaccatcca aactatgcca       960
     gcaccagtag agtctcaaca cgagcagtcg cgtaccaatt tcgcgcgctc aacggaaatc      1020
     gatctcacca gtattccaca gcaaccacag ttggataact acggtagtca cgagcagtcg      1080
     cgtaccaatt tcgcgcgctc aacggaaata ggtctagcca gcactccaca gcaaacacaa      1140
     tcgagtaacc acggaggcca cgagcagatg cgtaccaatt tcgcgcgctc agcggagatc      1200
     ggccttgcca atagtccgca gattcttcag tcgagtagct acaatcaagt agcagattct      1260
     ttgttcctgg aagtgcggcg accgtcacca gagcaactcg cggcgaggca agtgatgccc      1320
     agggatctgc cagacttcta tggagaccct gaagaatggc cgttgtttat aagcagtctt      1380
     cgcaacagta catccgcttg cgggtacagc agggttgaaa accttgctag gctgcagcgt      1440
     tgcctaaaag gcaacgcact caagtcagtg cgatacaact tgctcgatcc ggagtctgta      1500
     ccggaagtca ttcggacgct gcaaacacta tatgggcgtc ctgaagtgat tataagcaag      1560
     ctgatcaaaa gcgttcgcga tgccccagca ccaaaatccg agcgattgga gacgctaatc      1620
     gattttggca tggcagtcag aaatttagtc tgccatctaa tcgccgcaga tcagcgatcc      1680
     cacctctcca accccgtgct gttgcaagaa ctggtggaaa aactgccagc cagtgtgaag      1740
     atgcagtggg ctcaacatct tatccagttt cccgatatga ctctgcaaac cttcagcaat      1800
     ttcatgtcat ctgtggtgga atcggtgagc aaagtggtgc tgtacactgg tagccaaagt      1860
     caccgaccgg aaaagcagag atccaaggaa aagggatatt cgcatgccca tgttgaagcc      1920
     atcgaacctg ggcaacagaa gattgattct ccgaaaccct gtccggtatg cggaaaggct      1980
     gatcatcgga taaaggactg tgactcattc aagaggagca gcgttgacag tcgatggaaa      2040
     acggtttcat ctttgaagct ctgtcgctgt tgtttgggtc aacatggacg aagggtttgt      2100
     agaagctcag ctcgatgtga ggtcgacggt tgccaatatc gccatcaccg actattacac      2160
     ccgccgaagc aaacgaatag ctataatgct tcgaccacta acacgacgga aagccacacg      2220
     taccatcact gtgaacaatc catacttttc cgcatcattc cggtgactgt gaccggacct      2280
     tcgaaaacca tcgacacttt tgccttcttg gatgagggat cttccgctac attagtggaa      2340
     caaagtttgg cggaacagct agaactccaa ggtcctgtaa ttcctctttg tttaaaatgg      2400
     acagccgatg tatctcgttc ggaagagagg tcacaaatag tttcgttgga aatctcagaa      2460
     tcaggacgcg ctaggaaata ccgcttggat aatgccagaa cagtggaacg cttaaatctt      2520
     cccactcaaa cgctctgctt tgaagaactt caagaaaagt accagcacct ggctggattg      2580
     ccgattcgta gttacacgaa ggcgattcct cgactgctga tcggactgcg gaacttgtcg      2640
     ttggccgtgc cacaaaagat cagagaaggg aaaggaggtc caatagcagt gaaaacacgt      2700
     atcggttggt gcgtttacgg aaacctgact gagaatcgtg aacagaatca tttcagctac      2760
     catatctgcg aatgtgatgc gggagataag ctggacaacc tgattcgcga atatttcgat      2820
     gcagaagaca ctggtctacg ctttacagag cagattgaat cggacgaaat gcaaagagcc      2880
     aaaagtattc tcgagagaac tacaaagagg gataaaaacc gcttcactac cggactgttg      2940
     tggaaatacg atcatatcga gcttcccgac agtttcccaa tggctcttca gcggttgaag      3000
     tgcttagaga ggcgtatggc acgcgatccg atcctcaaag acaacttgca caagcagctt      3060
     aaagaatacg agcacaaggg ttacgctcat caagcctcaa cagccgagct aaacgaggct      3120
     gacccccgac gaacgtggta tcttccgttg ggtaccgtcg tgaacccaaa aaagccaact      3180
     aaggtacggc ttatttggga tgctgccgcg aaggtcgacg gggtgtcatt gaatacattt      3240
     cttctgccag ggcccgatct tctggtatca ttacctgccg ttttgtttcg atttcgccta      3300
     tatccggtag cagtctgcgg tgatatcaaa gaaatgtttc accaaattgg tgtcatcgca      3360
     gctgaccgac atgcccagcg ctttctttgg cgagaaacgc ctgaagaacc tcccaaggtc      3420
     tttctgatgg acgtgctaac ctttggctcg gcgagctcac cttcgtctgc acagttcgtc      3480
     aaaaaccgaa atgcgaagga acacgaagcc caatttccta gggcagctga ggggattgtg      3540
     aagtgtcatt atgtcgacga ttatctcgac agttttgagg acgaggtgga cgcgaaacta      3600
     gtttctgaac aagttcggca cgtccatttg aacggtggat ttgagatccg aaactggtcg      3660
     agcaacagca tggtggtact cgaacatctc ggtgaagcat cgaaggttgc aatgaaggac      3720
     ctaacagcag cgggaaacgg agaatcagaa aaagtactcg gaatgctctg gataaccgaa      3780
     acagacatgt tgtgtttttc cacgacgttc agggcggaca tcgatgaact tattcgctcg      3840
     aaggctagac cgacaaaaag gcaaatacta cgcacggtaa tgagtctatt cgacccacta      3900
     ggacttctgg catcatttct agtgcatggt aaaatcctca tgcaggatgt ttggcgaagc      3960
     ggtataaaat gggacgaacg cgtagacgac cgaactgaac agcggtggca caactggatc      4020
     gagctgttcg cgcgagtaga tgagatcaag attcctcggt gctacttcgt gacagccagc      4080
     actgaacggt atggaactct acaagcacac ctgttcgtcg acgccagcga ggctgcatat      4140
     tctgccgtcg tttacttcag gatcatcgat ggagaaggca atccacaatg ttcgctggtg      4200
     actgctaaga ctaaagtcgc acccatcaaa tatgtatccg ttccgcgttt ggaattgatg      4260
     gccgccgttt tgggagctcg attactagca tttgtaggag ataaccacac ggttccgatt      4320
     caacaacgtt tctgctggtc tgattcctgt accgtattgg cctggctgcg ttccgagcat      4380
     cgcaggtata aacaattcgt agcgtgtcgt gtaggagaaa ctctttcgtt gacgaaagtt      4440
     aatgaatgga gatgggtgcc aagcaggttg aacattgcag acgaggccac aaaatgggga      4500
     aagggaccct gtttcgacgc agacagtcgt tggatccaag gtccgaagtt cttgagctta      4560
     ccggaggaac attggccgag gatggaacca gcagaactct tgactgatga ggaactacgt      4620
     ccatgccatc tgtaccacga agtagttact cctctgatcg aatttgaacg gttttccaac      4680
     tggaatagat tgttgcgatc agtggcattc gttttccatc ctttcaccgt ttacaaggcc      4740
     cggaagttga atatcaacgt gaagcaagga ccaactcatg aagatctgaa agcagccgaa      4800
     attctgatct ggagaacagt gcagagtacc gtctatccgg atgaaataac cactatgtca      4860
     caaaaccgaa atttgccgag cagccaacaa cgcccactgg agaaatcgag ccctctctac      4920
     aaactcacac ctatgatgga cgaagacgga gtcttgcgta tcgatagccg cacaggagcg      4980
     gctcgggtga gtacgtttga cttgaagtat cctgttatac ttccacagaa acaccacgta      5040
     acccgtttgt tgatcgatca ctaccatcga aagttccttc actgtaatgc agagactgtc      5100
     gtgaatgagc ttcgacagaa gttctacata ccccgaattc gagttgccgt gaagactgaa      5160
     tcaaggctgt gccaatggtg caaagtgcca aaaatgggtc cgctacctga ggctcgctta      5220
     tctcccggag tacgaccgtt cagttacatc ggaattgact attttggacc gatccttgtg      5280
     aaagtgggtc gctcaagcgc aaaaagatgg gtctgtctca tcacctgctt aactattcgc      5340
     gcggtgcacg ttgaggttgc ctttgaccta tccacccaat cttgcatagc ctgcatccgc      5400
     agatttgtct gtcgcagagg agcaccgttg gagatatact ctgacaatgg acgaaacttt      5460
     gttggagctg atggagttct acgtgaacag atgaagcgca tcgatgaaga ggctgcagca      5520
     acgttcacta atgcacagac gaaatggtgt ttcataccac catctgctcc ccatatggga      5580
     ggatcatggg agcgccttgt gcgttccata aaggcagcat tgatcaacat accacaggac      5640
     agaaagctag atgatgaagc tctgttaaca tatctagcag aagcagaatc catcgttaat      5700
     tctcgtcctt taacgtactt gccgcttgat acgcccgaac aagaggccct cacgcctaac      5760
     cactttcttt tgggcagctc aagtggcgtg aaacaaccga caagagactt aggatgccca      5820
     actcgcttgc ttcgcaacac ctgggatacc ctgcaggtgg ccatcgacca gttctggcag      5880
     cgctggatcc gggaatacct ccctacactt acaagacgaa cgaagtggtt tggtgatcat      5940
     aagtccgtcg attctggtga tttggtggtc atcatcgaag acatgaaaag gaatggatgg      6000
     gttcgaggac gagttcttga agtgattaag ggaaaggaca gaagaattcg ccaggctgtt      6060
     gttcaaacat cgagtggagt gttcaaaaga ccggtttcca aactggcttt gctggacgtc      6120
     gcagtaagca gtaaggcaga cgtggacact catccttacg gggaggggaa                 6170
//
ID   BEL-172_AA-LTR repbase;    DNA;    INV; 710 BP.
XX
AC   supercont1.269;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-172_AA_;
KW   BEL-172_AA-I; BEL-172_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-710
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.269; Positions 1510166 1510875.
XX
SQ   Sequence 710 BP; 233 A; 116 C; 127 G; 234 T; 0 other;
     tgttggcgac gccacccctc atttggcaac ctagccgtct aataacggca gccgtttcta        60
     caaccgacaa aacgaagtgt cagaaagcag gagagctatt agacagaatg tatagagaag       120
     gatagagcaa tgatacgtgt agtgaagcag atgcagtgaa tttgttatcc taattcttga       180
     atcttatgct aatttattat attttctaat tgataaatta acttctacaa ttacttgggt       240
     gcataattag cttatcttta agttgcttta aaattcggaa aagtggcagt gaatgaattc       300
     gagattagct gaaatatgtt aagccactag tgaattgagg ttagatgtga aatttgatga       360
     ttgttcatga tttttctaaa gattaatcta tgtccccata gcaatcctag aagtcaccta       420
     caactaaacg taactctcac ttcgataaat ttatcgagta aattaaataa gtaagatctg       480
     gagttgtttt tcctttttcg attaactttc taattgacca atgcaaattc attatagaca       540
     cccgctacac ccagcaccat ataatttgtt cgtggaatag ttagcttcta tgagtaaacc       600
     gaatttgtaa gtgggtattc tataggtaaa ttaaactcat aaataataaa tttatatttt       660
     agcttagagc atcacgctaa agaatcggtg ttttgttgta ttcccgaaca                  710
//
ID   BEL-173_AA-I repbase;    DNA;    INV; 5822 BP.
XX
AC   AAGE02025208;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-173_AA_;
KW   BEL-173_AA-LTR; BEL-173_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5822
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025208; Positions   18488   12667.
XX
CC   Positions [4860-5411] - Integrase core
CC   'CACAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..4185
FT                 /product="BEL-173_AA-I_1p"
FT                 /translation="METGRHDTTAGNYHCKKCNRRDSADTHMVACDQCHVW
FT                 THFGCAGVDESIKDRKYVCNACEALEGVASGMQQLKPPGADNKSTKSSKRT
FT                 KKNSNTPVPSMTSSVREALLEAQMKMIEERQLLEEQALREQEAIRVKQIEE
FT                 ERRQLDDKRRLAEEENQLRERQLQEEKAFQAKQQLIRQQSLDKKHELLRQI
FT                 AEASSRPGSVVDSRGKVSSWLAHQHAVVDEDAYDCGAGAPHIVNQQERNNG
FT                 GGTALPAAPMSENRSHRPGLQAQSPVQEEETITPFRTSKSLNPTALSTQHF
FT                 AARQVIGKELPTFGGSAEDWPIFISCFEQSTDACGYSDAENLIRLQRSLKG
FT                 HALESVRSRLLLPSSVPHVISTLRTLYGRPELLVRSLIAKVHRVPAPRQDR
FT                 LETIMEFGLAVQNLVDHYRAAHQKNHLANPTLMQELVEKLPGPLRLDWAVY
FT                 KSQHPNVTLRTFGGFMSRLVTAASEVTYDLPVHSKPARNEKIKSKEWGIVQ
FT                 AHTAVQYSTERPNRDSRKVSKPCALCEREGHRLHECPQFRTFDVDERWKFV
FT                 QQKGLCRTCLNGHGNWPCKSWQGCAHQDCRLKHHTLLHPPTTAVYHSVNIS
FT                 SNCSAGNEKLFPIFRIIPVVLRNRGRSEIVYALVDEGSSLTLLEKSIAEQL
FT                 QVVGPTEALTLQWTGNITREENESQIIQLDVAGKGSGTYHKLISVHTVDGL
FT                 LLPTQTFRYQELAKQFPHLRGLPIEDQEQVQPKLLIGLENLRLAVPIAIRE
FT                 GAAGEPIAAKCRLGWGIYGCALAPSGNKPVLNFHVSVASDSDRQLNEQLQD
FT                 YFALDVSGVSGAGEKPESDENKRAMRILKETTRRTLRGFETGLLWNTDNPN
FT                 FPNSYLTALRRLQSLERRLSKEPTLRERVNELIHEYEAKGYAHRATQNEIQ
FT                 SSDPSRVWYLPLGIVTNPKKPDKIRLIWDASAKSDGVSLNSKLLKGPDLLT
FT                 PLPTVLSRFRQYPVAVSGDIREMFHQLTVIEPDQQAQRFLWREDPAGEPHI
FT                 YVMDVLTFGSTSSPSSAQYVKNLNASEFASEYPRAAGAILENHYVDDYLDS
FT                 FATVEDAIRTVNEVKHIHSKGGFQLRKFKSNDVAVLRGIGELANDECKDLL
FT                 LERGESIESVLGMKWIPKEDVFIYAFAPRKEFHQILCPEHVPTKREVLKIV
FT                 MSLFDPLGFASFFLVHGKVLIQEIWASGSHWDQPIKDEICERWHRWTEMFD
FT                 QLVKLRIPRSYFSSAIPTEFNNLQIHIFVDASEAAYSCVGYFRLDSESGIQ
FT                 VSLIGAKTKVAPLKTLSIPRLELKAAVLGARFMESIQANHTFHVSQKYYWS
FT                 DSSTVIAWIRSDHRRYNKFVELRIGEILMLSDPCDWKWVPSKINVADHATK
FT                 WNKGLSFQNDSEWGQTFYTIPN"
FT   CDS           4155..5801
FT                 /product="BEL-173_AA-I_2p"
FT                 /translation="MGPNFLYDPELTWPQQRTISTTQEEIKRCHTHWTPSP
FT                 LIDVSRFSQWTRLHRAMAYVLRFIDNLRRKRNRQPLVIGLLQHEELVRSEQ
FT                 SLWKIAQLEAFPVEVESLSKTRGPPEERHPTVAKSSSIYRSWPFMDSDGVV
FT                 RMRSRLGSAFYIPVEARYPAILPRQHRITTLIIEWYHRRYQHANRETIVNE
FT                 IRQRFEISKLRALIGKIIKNCVKCRLTKATPEYPPMASLPEARLSTFERPF
FT                 TFVGLDYFGPVLVRVGRSTAKRWIALFTCLSIRAIHLEVVHSISTESCIMA
FT                 VKRFVARRGPPVEIYSDNATCFQGASNELQREINDALALTFTSTNTSWKFI
FT                 PPAAPHMGGVWERLVRSVKVAIASINETCRKPDDETLETIVLDAEAMVNAR
FT                 PLTYVPLESANDEALTPNHFLLGSSSGVKIAPLETPSKPAVLRSSWKLAQH
FT                 ITNHLWSRWIKEYLPIITRRSKWFEEVRELKEGDLVLIVGGTSRNQWTRGR
FT                 VEKVVYGRDGRVRQALVRTSSGVLRRPAVRLAILDVNGNGKPSSEHDDLVN
FT                 HQ"
XX
SQ   Sequence 5822 BP; 1768 A; 1299 C; 1395 G; 1360 T; 0 other;
     aattccttta agaattttgt acgtggagct atggaaactg gacgtcacga tacgactgct        60
     ggaaactatc attgcaaaaa atgcaatcgg agagattcgg cagataccca tatggtggct       120
     tgcgatcagt gtcatgtatg gacccacttc ggatgtgctg gagtcgacga gtccattaaa       180
     gatcgtaaat acgtatgcaa tgcatgtgaa gctttggaag gagtcgcaag tggaatgcaa       240
     caactcaagc cacccggtgc ggacaacaaa tccacgaaat catctaagcg aaccaagaaa       300
     aattcgaaca cacccgtgcc cagcatgacc tccagtgtcc gagaagctct gttggaggca       360
     cagatgaaga tgatagaaga acgacaactt ctagaagagc aagcgttaag ggaacaggaa       420
     gcgataagag tcaagcagat agaggaagag cgccgtcaat tggatgacaa acgacgacta       480
     gcagaggaag aaaatcaact acgagagcgt cagcttcaag aagagaaagc gttccaagca       540
     aagcagcagc tcataaggca gcagtcactc gataagaaac atgaactact ccgtcagata       600
     gcagaggcta gtagtcgacc cggatcagtt gtagattcac gcggaaaagt ttccagttgg       660
     ctggcacatc agcacgccgt ggttgacgaa gacgcgtatg attgtggtgc tggtgccccc       720
     cacatagtaa atcaacaaga gcgaaacaac ggtggaggaa cggcgttgcc tgcggctccg       780
     atgtcggaga acagatcaca cagacctggg cttcaagctc aatcgcctgt acaagaagag       840
     gaaacaataa caccgtttcg tacttctaag agtttaaatc cgactgcact gagcacacaa       900
     catttcgctg cacgacaagt tataggcaaa gaattgccta cgtttggagg aagtgctgaa       960
     gattggccga tattcataag ctgttttgaa caatcaacag acgcttgtgg atattcggat      1020
     gccgaaaact tgatccgcct tcaaagaagt ctgaagggcc atgctttgga gtccgttcgg      1080
     agccgcctgc tactcccatc gagtgtacct cacgttatta gcacgctgag gacactatac      1140
     ggtcgacctg aattactggt tcgttccttg atagcgaaag tacaccgtgt tccagcaccg      1200
     agacaagata gactggaaac tatcatggaa tttggtctcg cggtgcaaaa tttagtcgac      1260
     cattacaggg cggcgcacca aaagaatcat cttgctaatc ctacactcat gcaagagtta      1320
     gtggaaaagc ttccaggacc tctaaggcta gattgggcag tttacaaaag ccaacatcca      1380
     aacgttacac tgaggacctt cggtggcttc atgtctagat tggttactgc agcgagcgag      1440
     gtgacatacg atctaccggt acacagcaag cccgccagaa acgagaaaat caagtcgaaa      1500
     gagtggggaa tagtgcaagc acatactgca gtgcagtaca gcacggaacg cccgaatcgt      1560
     gatagtcgga aagtcagcaa accatgtgca ttatgtgaac gcgagggaca tcgactacat      1620
     gaatgcccac aatttagaac gttcgatgtg gatgaacgat ggaaattcgt acaacaaaag      1680
     gggctttgta ggacttgtct caatggccat ggtaattggc catgcaaatc ctggcaagga      1740
     tgcgctcatc aggactgccg ccttaaacat catacattgc tccatccacc caccacagca      1800
     gtatatcatt cggtaaatat ctcttctaac tgctctgctg gtaatgaaaa attgtttcca      1860
     atatttcgaa ttatcccggt tgtgttgaga aacagaggtc gctccgaaat agtttacgcg      1920
     ctagttgatg aagggtcatc tttgactctc ctggaaaagt ccattgcaga acaactacaa      1980
     gtggtcggac caacagaggc acttacccta caatggactg gaaatattac ccgagaagaa      2040
     aacgaatcgc aaataattca actagatgta gcaggaaagg gtagtggcac ctatcataag      2100
     cttatcagtg tgcatacggt cgatggatta ttgctgccta cccaaacatt tcgatatcaa      2160
     gaactggcta aacaatttcc tcatctacgg gggttaccaa tagaagatca agaacaggta      2220
     caacctaagc tgctgatcgg tttggaaaac ctgcgacttg ctgtaccgat agccatacga      2280
     gaaggcgcgg ctggggaacc aattgcagca aaatgtcgcc ttggttgggg aatttatgga      2340
     tgcgccctag caccttctgg aaataaaccc gttctgaatt tccatgtgag tgtcgcatca      2400
     gattccgatc gtcagttaaa cgagcaatta caggactatt tcgccttaga cgtgtcagga      2460
     gtatcaggag caggtgaaaa accagaatca gacgaaaaca aaagagcgat gcgtatacta      2520
     aaggaaacca cacggcggac gttgcgagga tttgaaacag ggctactttg gaacaccgac      2580
     aatccaaatt ttccaaatag ttatttgaca gcactacgtc gtctacaatc actagaaaga      2640
     agactatcga aagaaccgac tctcagagaa cgtgtaaatg aactgattca cgaatatgag      2700
     gctaaggggt atgcccatag ggctacacaa aatgaaatcc aatcgtcgga tccgtctcgt      2760
     gtctggtatc tcccgttggg aattgttacg aatcccaaga aaccagataa gattaggctc      2820
     atctgggatg cctcagctaa atccgacggt gtgtcgctca actccaaact cctaaaaggc      2880
     ccggacttgc tgacaccatt gccaacagtg ctctctcgtt tccgccagta ccccgtggca      2940
     gtaagtggag acataagaga gatgtttcat caactcacag tcatcgaacc agaccaacaa      3000
     gcacaaagat tcctttggcg tgaagatcct gcaggagaac cacacatcta cgtgatggac      3060
     gttttaacgt ttggctcaac ttcctcaccc tcgtcagcac aatacgttaa gaaccttaac      3120
     gcatcagagt tcgcatccga gtacccacgt gcagcaggag caattttaga aaaccattac      3180
     gtggacgact acctcgatag ttttgccacg gtggaggatg cgatccgcac agtgaatgag      3240
     gtgaaacata ttcattcaaa gggaggtttc cagttgagga aatttaaaag caatgatgtc      3300
     gccgtactgc gcggaatagg agagctcgcg aacgatgaat gtaaagatct gttgctagaa      3360
     agaggagaat caatcgagtc agtactcggg atgaagtgga ttcccaaaga agatgtcttc      3420
     atttacgctt tcgctccacg taaagaattc caccaaattc tctgccccga acatgttcca      3480
     acgaagcgag aggttttgaa aatagtaatg agcctgtttg atccattggg ctttgcatca      3540
     ttttttcttg tacatggtaa agtgttgatt caagagattt gggcctcagg atcacattgg      3600
     gatcaaccta taaaagatga aatttgcgaa cgttggcatc gatggacaga aatgttcgac      3660
     cagctagtaa agttgaggat accaagaagc tacttctctt cagcgattcc gactgagttc      3720
     aacaatctac aaattcatat attcgttgat gctagcgaag cagcctattc atgtgttggc      3780
     tactttcgtt tggattccga atcaggaatt caagtgtcgt taattggcgc caaaactaag      3840
     gtcgctccac tgaagacctt atcaatccct cgactagaac taaaagcagc agtactgggg      3900
     gcgcgcttca tggaatcaat acaagccaat cacacctttc atgtatcgca gaaatattac      3960
     tggagcgatt cgagtactgt tattgcatgg atcagatcag accacaggcg gtacaataaa      4020
     tttgttgagc tacgaatcgg tgaaatcctg atgctgagtg atccttgtga ttggaaatgg      4080
     gttccttcca aaatcaacgt agcggaccat gcaacaaagt ggaacaaagg tctaagtttt      4140
     caaaatgaca gcgaatgggg ccaaactttc tatacgatcc cgaactaaca tggcctcaac      4200
     aacgaacaat ttccacaacc caagaggaga ttaaacgttg tcacacacat tggactccga      4260
     gtcctctaat cgacgtgagc agatttagtc agtggacaag attacaccgg gctatggctt      4320
     acgttctccg gtttatagat aacctacgtc gaaagaggaa tcgtcaacca ttggttattg      4380
     gactacttca acatgaggaa ttggttaggt cggaacaaag tttatggaaa attgcacaac      4440
     tagaagcttt tccggtggaa gttgagtctc tctccaagac acgtggacca ccagaagaac      4500
     gtcatccaac agttgcaaaa tcaagttcaa tctacagaag ctggcccttt atggacagtg      4560
     atggtgtagt gcgcatgcga agcagacttg gttcagcatt ctacattcca gttgaagccc      4620
     gataccctgc gattctccca aggcaacatc gtataactac actaattatc gagtggtatc      4680
     accgacgata ccaacatgcc aatcgggaga caatagtaaa tgaaattcgc caacgatttg      4740
     aaatttctaa gcttcgggct ctcattggta aaataataaa gaactgtgtc aaatgccgcc      4800
     taacaaaggc tacacccgag tatcctccta tggcatctct tcctgaggct cggctgtcga      4860
     cgttcgagcg accgtttacg ttcgttgggc tcgattattt cgggccagtt ctggtacggg      4920
     ttggcaggag tactgcaaaa cgctggatag cactatttac gtgtctttcc attcgcgcca      4980
     tacacctaga agtcgtacat agtatttcaa cagagtcgtg tataatggca gtcaaacgat      5040
     ttgttgcacg acgtggcccg cccgtggaga tatactctga caacgcaacg tgcttccagg      5100
     gagctagcaa tgagctgcaa agggagataa atgatgcact ggccttaacg ttcaccagca      5160
     caaacacctc atggaaattt attccaccag ctgcgccaca tatgggaggc gtttgggaac      5220
     gcctggtgcg ttctgttaaa gttgcgatcg cgtcgatcaa tgagacttgt cgcaaacctg      5280
     acgacgagac acttgaaact atagttcttg atgcggaagc gatggttaat gctagacctc      5340
     ttacatatgt gccacttgaa tcagcaaatg atgaagcact aacacccaac cattttcttc      5400
     taggaagttc atcaggagta aagatagcac cattagaaac cccaagtaag cctgcggtac      5460
     tccgaagtag ttggaagtta gcgcaacaca ttaccaatca tttatggagt aggtggatta      5520
     aagaatattt acccattata accagaagaa gtaaatggtt cgaagaagta agggagttaa      5580
     aggaggggga cttagtccta atagtaggcg gtacttcgag aaatcaatgg actcgtggcc      5640
     gagtggagaa ggtggtatac gggcgtgacg gaagagtgcg tcaagctcta gttcgcacgt      5700
     cgtccggtgt attgcgaaga ccagcagtgc gcttagctat tctcgacgtc aacggtaatg      5760
     gtaaacccag cagtgaacac gatgacctgg tgaatcatca gtaggattta cgggaagggg      5820
     ga                                                                     5822
//
ID   BEL-173_AA-LTR repbase;    DNA;    INV; 654 BP.
XX
AC   AAGE02025208;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-173_AA_;
KW   BEL-173_AA-I; BEL-173_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-654
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025208; Positions   12666   12013.
XX
SQ   Sequence 654 BP; 217 A; 124 C; 106 G; 207 T; 0 other;
     tgtcacgatg aaacccctcg tcgcgtcaaa gctgcaaaca acaagcagcg cttcgaaagc        60
     cgagctgtca acctgagccg tcgttgacgt taccatacgt gcgttgtcag actagaggga       120
     ttcgcagaaa ttgaagcata ttaccaacaa cttacctaat ctacatacta tacgtaaaag       180
     tacctattat ctaaaattga tcccattcga attgttagtg atacatgatg tacaagtagt       240
     ttaaagacag tggatgaaat tatgaaatta tgtatgtaat ctacgaatga tctcctatac       300
     aaattgttta tttatatctt cactttttgc cctttgtagt tatgctctaa gaatattcaa       360
     tcagtgaatt caattattat acctttcaaa ttgaatatat agaagactcg aggtaattac       420
     atataactag aactaaggta gctttgaatt aacctacaat tattcaatta ggtcttcgta       480
     gcagtcagtc tgtgacacga tccgcaaaag ttttcctggg attttcacca aaattgtaag       540
     acgacctctg taatttgttg aaaatgaatc actaaatata attctatttt tagcttaaag       600
     cttaacccac aacataaggt ctgcttcatt aagatttggg aaatcttcgc caca             654
//
ID   BEL-174_AA-I repbase;    DNA;    INV; 5874 BP.
XX
AC   AAGE02031694;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-174_AA_;
KW   BEL-174_AA-LTR; BEL-174_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5874
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02031694; Positions    3577    9450.
XX
CC   Positions [4891-5463] - Integrase core
CC   'AGGAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           553..5874
FT                 /product="BEL-174_AA-I_1p"
FT                 /translation="MKQASLEKRQELIRQHAQMSDRGSSVSEYSAGTESSK
FT                 VEKWLTDRQEDIKKDLQKQETTELPSRQAPLPRAPSRPSLIVGSIPQHHHQ
FT                 PLSVEHRLDEQIAAPFQNMSLHNFPSPQAVQPSLPPAYMQIAARQVTGKDL
FT                 PVFNGNPEDWPMFIRIFEETTAACGFSNVENQVRLQKCLRGSALETVRSRL
FT                 LMPEGVPHVIKTLEMRFGRPELIIRSMLDRIQRLPAPKPDRLETLIDFGLA
FT                 VQNLVVHLQAAKQDNHLNNPTLLQELVAKLPAQLKLDWARYKILNAAPTLA
FT                 TFGNFMEQLIQAASEVSFDIPITVTNTKPEKLRSKEKAVAYSYSHDKQSSN
FT                 SSRNVESTKKPARVCSMCSNPSHRLWGCGEFRKRSFEDRIKFVRQNNLCRT
FT                 CLNFHQKWPCKTFKGCAVEGCQEKHHSLLHPPASRDPVHLSTSHSSLRTDK
FT                 RQLLPFFRILPVTLSKDSVELSTFAFIDEGSSSTLLDRSLADVLGLSGPME
FT                 PLTLQWTGNVTRKERNSECVQVHIAGRDKSQKYQLIDARTVDNLLLPKQSL
FT                 PYRLLSEKYPYLRGLPIEDYEMVEPKILIGVDNLSLGIPLKIREGGPKEPT
FT                 AAKCRLGWTIYGGGGNSPLSSVSVHFHASAIQDPDRELNQQLSDYFTLDKA
FT                 GADLPFPIPESEAEKRARRLLEETTRRVGQRFETGLLWKADDVKFPDSYPM
FT                 AVRRLEALERKLNKQPVLKSRVKQLLDEYVAKGYYHQASPDELVAAEERNV
FT                 WYLPLSIVINPRKPEKIRLVWDAAAQVHGVSFNSALLKGPDLLTPLVAVLS
FT                 HFREHRFAVSGDIKEMFLQMLIRAEDRQAQRFLWRTNPDEAPHIYIIDVAT
FT                 FGSTCSPSSAQFVKNLNAQDYVQQFPRATIAIVKFHYVDDYLDSFATEEEA
FT                 IEVVQDVKYIHSMGGFEIRNFLSNSERVLAAIQEEPRRNEKDLNITRAEKV
FT                 ESVLGMKWSPNADMFSYALSPKEEISKIFESAYAPTKREMLKVVMSLFDPL
FT                 GFITFFLIHGRILIQDAWAAGIGWDTPICGPLYHKWRLWISGFTLLNDLRI
FT                 PRTYFRHAEKGPVQLHVFVDASTEAYACVAYFSAMGPAGIEVALIAARGKV
FT                 APIKVLSVPRLELNAAVLGTRLAESVIDSHTYQIERKLFWSDSKTVLAWIN
FT                 SDHRRYHQFVAVRIGEILSSTRMSEWRYVPSSQNPADFATKWGNGPNFDME
FT                 TQWFRGPAFLYHPEDSWPNTRCFTTATEMSNAQHVHWRPAEPVIDVTRFSK
FT                 WERLQRTGAYVLRFIENLKRRQNGEALLLGILSQSELQRAEKALWKQAQNE
FT                 VFAEERHQLQRTQGSAEARHNLLPKTSSIYKLWPYLDEDGILRMRGRIGAA
FT                 WYAPYEAKYPVILPDTHLISSLLADWFHRLYHHAHSETVVNEMRQRFEIRK
FT                 LRALVKRVVKNCFVCHLAKAIPRPPPMAPLPKQRLTPFIRPFTYVGVDYFG
FT                 PLLVKVGRSQSKRWVALFTCLTVRAVHLEVVQSLSSESCIMAVRRFIARRG
FT                 APAEIFSDNGTCFVGANKQLQQEMQVRNDALATTFTNTNTRWLFNPPNAPH
FT                 MGGAWERLVRSVKQAIGTIIDAPRLPDDETLATILSDAESMINSRPLTYVP
FT                 LDSADEESLTPNHFLLGSSSGVKQPPSEPKNFRTNLRSSWTLAQHITDTMW
FT                 RRWIKEYLPVIRRRGKWLEEVRDIREGDLVLIVGGAVRNQYVRARVEKVFF
FT                 GRDGRVRQALVRTATGVYKRPVVRLALLDVGSFGEADEESSEAADHHQASR
FT                 EGV"
XX
SQ   Sequence 5874 BP; 1648 A; 1375 C; 1467 G; 1384 T; 0 other;
     aaatctttta gaatcttgtc ctcgtcaaca cgatggataa aggaggtacc tctaaacctg        60
     gatgtcgatc gtgtaaccgg ccagacaccg ctgatgctat ggtcgcttgc gatgtatgtg       120
     gtgattggca tcacttcgga tgcgtaggag ttgatgcgag cgtggagaat catcattgga       180
     tatgccgagg atgtgaagta aaaggccacc cgtccggctc aaacgccgcc ggtgataaag       240
     atggtgtgcc acaagcgcat acgatgaaaa ctcgatcgaa agtcgctagc agtaaagcat       300
     cgtcacggta caaaaggacc gtggacatcg tcgtccgttc gaaaactggg agtgccacat       360
     ctaaccgatc agcgatcatc gaagaacagt tgaagttatt ggaggagcag gaacgtttga       420
     aggaagaaga attgcgacaa aaggaggagc tagagcggct tgagtttgaa gaaaagcatc       480
     gacaaattga agaattgcgt cgtcgtcagg tagaagagtc gaagctacgt gaagacagag       540
     ttatggttgc gaatgaagca agcatctctc gaaaagcggc aggagctgat caggcaacat       600
     gcccagatga gcgatcgagg atcgtcggtc tccgaatact cggctggaac ggagagcagc       660
     aaggtagaaa agtggttaac ggatcgccag gaagacataa agaaagatct ccaaaaacaa       720
     gagacaacgg aacttccttc gcgacaagcc cctctaccac gggctccatc acgaccgtcg       780
     ttgattgtcg gaagtattcc tcagcatcac catcaaccac tttccgtgga acatcgtcta       840
     gatgagcaga ttgcggctcc atttcaaaat atgtcgttgc acaattttcc gtcgccacaa       900
     gcagtccaac cttcattacc ccccgcatac atgcagattg cagcacgtca agttactggc       960
     aaggatcttc cggtgttcaa tgggaacccg gaagactggc cgatgtttat tcgaattttt      1020
     gaagaaacaa cggcagcatg tggattttcc aacgtggaaa accaggttcg gctccaaaag      1080
     tgcctacgag gtagcgccct ggaaacagtt cgtagtaggc tattgatgcc cgaaggagtc      1140
     ccgcatgtta tcaagaccct cgaaatgcga tttggccgac cggagctgat tatacgatca      1200
     atgttagatc ggatacaacg acttccagct ccaaagccgg accggcttga aacattaata      1260
     gactttggcc tggccgttca gaatttagta gttcatctcc aggcggcaaa gcaagataat      1320
     caccttaaca acccgaccct acttcaggag cttgtggcga agctgccagc gcagctcaaa      1380
     ctcgactggg ccaggtacaa aattcttaac gctgcaccga ctcttgctac ctttggaaac      1440
     ttcatggaac agttgataca agcagcaagc gaagtttcct ttgacattcc gataaccgtg      1500
     acgaatacaa aaccggaaaa attgaggagt aaagaaaaag ctgtagcgta ttcgtactct      1560
     catgacaaac aatcgtcaaa ttcttcgagg aacgtggagt caacgaaaaa accggccagg      1620
     gtctgttcca tgtgtagcaa tccaagccac cgattgtggg gttgcgggga attcaggaaa      1680
     aggagttttg aagatcgtat aaaattcgtg cgacagaaca atctttgccg aacctgcttg      1740
     aattttcatc agaaatggcc ctgtaagacc ttcaagggct gcgccgttga aggatgccag      1800
     gagaaacacc attctctctt acatccacca gcttcccgtg acccggtaca cctgtctaca      1860
     agccattcat cactgcgtac tgataaacgc caactacttc cgtttttccg aatacttccg      1920
     gtcactctct ccaaagatag tgtagagttg tccacatttg cgtttattga tgaaggatcc      1980
     tcgtccactc tcttggatcg ctcattagct gatgttcttg gactcagcgg cccaatggag      2040
     ccgcttacat tacaatggac tggcaacgtc acgcgaaaag agaggaactc cgagtgtgta      2100
     caagtgcaca tcgccggcag ggataaatcg caaaagtacc aactaatcga tgccagaaca      2160
     gtggacaact tgttgcttcc gaaacaatcg ctgccataca ggcttctcag tgagaaatac      2220
     ccgtatctcc gtggtttacc aattgaggat tacgagatgg tggaaccaaa aatcctcata      2280
     ggtgtagaca atctcagtct cggaattccg ctaaaaatac gggaaggtgg gcccaaggag      2340
     ccaaccgcag cgaagtgcag attaggttgg accatctacg gtggcggtgg aaattcacca      2400
     ctgtcatctg tatcagttca cttccatgcc tcggctattc aagatccaga tcgagaattg      2460
     aaccaacaac tcagcgacta cttcaccctt gacaaggcag gagctgatct accgtttcct      2520
     attccagaat ctgaagcgga gaaaagggca cggagactgt tagaagagac cactcgtcgc      2580
     gttggacaac gtttcgagac tggactgtta tggaaagctg atgacgtgaa gtttccggac      2640
     agttatccca tggcagttcg gaggctagaa gcattggaaa ggaaacttaa taagcaacca      2700
     gttctcaaat cgcgcgttaa gcaactactg gacgaatatg ttgcgaaagg ctactatcat      2760
     caagcttctc cagatgaatt ggtagccgcg gaggagagaa atgtttggta tcttccatta      2820
     agcatcgtca tcaacccgag aaagccagag aaaattagac tagtctggga cgctgcagca      2880
     caggttcatg gagtgtcgtt caattcggcg ctgttaaagg gaccggattt acttacacca      2940
     ctagtcgctg tcctgagcca ttttcgagag cataggttcg cggtgagcgg tgacatcaag      3000
     gagatgtttc tccagatgct gattcgtgcc gaggatcggc aagctcagcg gtttttgtgg      3060
     agaacaaacc ccgacgaagc tccccacatt tacataatcg atgtagcaac gtttggatcc      3120
     acttgttccc caagttctgc tcagttcgta aaaaacttaa acgcgcaaga ttacgtgcag      3180
     cagttcccga gggctacaat agcaatcgtc aagttccatt atgtggacga ttatcttgat      3240
     agcttcgcaa ctgaggagga agccattgaa gtcgtacaag acgttaaata cattcactct      3300
     atgggaggat tcgagattcg gaactttctg tcgaattcag aaagagtgct agcggccata      3360
     caagaagagc ctcgaagaaa cgaaaaagac ctcaacataa cccgggcgga gaaggttgaa      3420
     tctgtattgg gaatgaagtg gagtcccaac gctgacatgt tttcttacgc tctgtccccg      3480
     aaggaagaaa tttcaaaaat tttcgagtcg gcatacgcac caacgaaacg tgagatgctc      3540
     aaagtagtta tgagcctatt cgacccacta ggattcataa cattcttcct tattcatggt      3600
     cgaattttaa ttcaagatgc gtgggcggcc ggtatcggat gggatactcc aatatgcggc      3660
     ccattgtatc ataaatggcg gctttggatc agtggtttca ctctgctaaa tgatctgcgc      3720
     attccacgca cttattttcg gcatgctgaa aaaggtccag tacagcttca tgtgttcgtc      3780
     gatgctagca ccgaagcata tgcttgcgtg gcgtacttca gtgccatggg ccctgcagga      3840
     atcgaagtgg cgttgatcgc cgcaaggggc aaggtagcgc caataaaggt tctctccgtc      3900
     cctcggcttg aacttaacgc tgccgttttg ggaactcgtc tagcagaatc agtgattgat      3960
     tctcatacgt accaaatcga acgtaagctc ttttggagcg actcgaaaac agtcctcgcc      4020
     tggatcaact ctgatcaccg aagatatcat cagtttgttg ctgtaaggat cggcgaaata      4080
     ctatcgtcaa cccgaatgag cgaatggaga tatgtaccat ctagccaaaa cccagcggat      4140
     tttgctacga aatggggcaa tggcccaaac ttcgacatgg aaactcaatg gtttcgtgga      4200
     cctgcctttt tgtatcaccc tgaagattcg tggccgaaca cccgttgttt cacgaccgcc      4260
     acagagatga gcaatgcaca gcatgtacac tggcggccag ctgagcctgt aattgacgtc      4320
     actcgtttta gtaagtggga gagacttcaa cgaacaggag cctatgtact tcgtttcatc      4380
     gagaatctca agcgccgaca aaatggggaa gcattattac ttggtatttt gtcgcaatcg      4440
     gaactccagc gtgcagagaa ggctttatgg aagcaggccc agaacgaagt ttttgccgaa      4500
     gaacgacatc agttgcagag aacacaggga agcgctgagg cgcgacataa cttgctacct      4560
     aaaacgagtt ctatctacaa attgtggccg tatttagacg aggatggtat tctgcgtatg      4620
     cgtggaagaa ttggcgccgc ctggtatgcg ccatatgaag ctaagtaccc cgttatatta      4680
     ccagatacac acctaatctc ttctctcctt gcagactggt tccaccgcct ataccaccac      4740
     gcccactcag agacggtagt gaacgaaatg cgtcagcgtt tcgaaattcg taaactgaga      4800
     gcgctagtta agagagtagt taaaaactgt ttcgtctgtc acttagccaa agcaattcct      4860
     cgtccacctc ccatggcccc tctaccgaaa caacgattga cgccgtttat tagaccattc      4920
     acctacgttg gggtagatta tttcgggcct ctactcgtga aggtgggtag atcgcagtca      4980
     aaacgttggg tggccttatt cacctgctta actgtgagag ccgtacacct tgaggtggtc      5040
     caaagtctgt cgagcgagtc gtgtataatg gcagttaggc gattcatcgc tcgccgcggt      5100
     gctcctgctg aaattttcag tgacaatggc acctgctttg taggtgccaa taaacagcta      5160
     caacaagaaa tgcaagtaag aaatgatgcc ctcgcgacta cgtttaccaa tacaaacaca      5220
     cgttggttat tcaatcctcc aaatgctccc cacatgggcg gggcgtggga gcgtttagta      5280
     cgctccgtga aacaagcaat tggaacgatc atcgatgcac cgaggttacc agacgatgaa      5340
     acattagcca ccattctttc cgatgccgag tctatgatca actctaggcc attaacttat      5400
     gtgccccttg atagtgcaga tgaggagtca cttaccccaa atcacttttt gttgggcagc      5460
     tcatcagggg tcaaacagcc accctcagag ccaaaaaact ttcggactaa ccttcggagt      5520
     agctggaccc tcgctcaaca cataaccgat acgatgtgga ggaggtggat aaaagagtac      5580
     ttgccagtta ttagacgccg tggaaaatgg ctggaagaag tacgagatat tcgggaagga      5640
     gatttggtac taatagtggg tggtgcggtg cgaaaccagt atgtgagagc aagagtggaa      5700
     aaggtattct tcggacgaga tggacgagtt cgtcaggcac tagtacgaac agctacggga      5760
     gtttacaaaa gaccggtagt gagacttgcg ttgcttgatg ttggatcctt tggcgaagct      5820
     gatgaggagt cttcagaagc tgcagatcat caccaggctt cacgggaggg ggtt            5874
//
ID   BEL-174_AA-LTR repbase;    DNA;    INV; 668 BP.
XX
AC   AAGE02031694;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-174_AA_;
KW   BEL-174_AA-I; BEL-174_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-668
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02031694; Positions    2909    3576.
XX
SQ   Sequence 668 BP; 223 A; 98 C; 133 G; 214 T; 0 other;
     tgttgcaacg ctttagataa aagcccctcg acagaagccc tgctaatgta caatagggat        60
     tgcgctaact gacagtatca gtgatagagc ggtagatgag ataaagcgat acgttgacgt       120
     ctgtcatatt agatgattag tagctgactc atggtaaacc caaattttct aagtgaaatt       180
     gttctgctga taattattat atttcgcgat tattctatat gaaaatacgc tgtttacttc       240
     gatagtttga atttgagtga gtagctaaca tgaattcgtt atttgcacaa aacgttatgt       300
     atatttccat tggaataggt acgacagaga attcttcatt ccattgatcg ggataataaa       360
     tcacgtttaa gaatttgata agtttgtgct cagattcggt aaaagtttag gtaacgtatt       420
     gattgaattg tgcattatgc agtgaattga tttatagtta ttaatagata gtttaacgtt       480
     ataacagatt aaaaacacta ctcgaggtaa ggtgagaggt aacctatgtt tacaccagag       540
     cggaaaccaa gattgtgagt agaattgcgc ttacatatta gttgttaaac ctaatcaaat       600
     gttacgaatt ctagctaaaa gcaaaataaa ctccaaatat ttgctaaacg gacttggctg       660
     ctcgaaca                                                                668
//
ID   BEL-175_AA-I repbase;    DNA;    INV; 6123 BP.
XX
AC   supercont1.27;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-175_AA_;
KW   BEL-175_AA-LTR; BEL-175_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6123
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.27; Positions 1378547 1384669.
XX
CC   Positions [5186-5632] - Integrase core
CC   'GTACA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4121..5632
FT                 /product="BEL-175_AA-I_3p"
FT                 /translation="MALIGGKAKVAPLKALSIPRLELMAAVIGVRLLKTIR
FT                 NGHSMKIGRTTMWSDSKTVLAWINSDHRSYRQFVACRVGEILSKSDVAQWR
FT                 WVPTKENPADLATKWGKGPCLSPNSRWFNGPSFLRLPETEWPTGVKPMEET
FT                 TVEELRECLVHTEATRMWVVDWQRFSNWNRLLRSVAYVHRFCANLQRKVKK
FT                 EPQVTGALRQHEIAQAEMTIFRLVQSEQYPDEMAILSDALNENRTKCGKLE
FT                 RTSKIRTLSPYMDDSGVIRAESRISAATFVSYDTRFPIILPKAHVVTRLLL
FT                 EWYHRRFLHANNETVVNEVRQRFHISALRVAVREVTKMCTLCKVKKAVPAV
FT                 PRMAPLPAAILKPYERPFSYVGLDYFGPILVRVNCSTVKRWIALFTCLTTR
FT                 AVHLEVANSLSTESCKQAIRRFIGRRGAPVEIRSDRGTNFVGANNDLRKEM
FT                 MEMDQQLAETFTNTYTRWVFNPPAAPHMGGAWERLVRSVKTAIAAIQTTEI
FT                 PKVWRHLW"
FT   CDS           join(41..2665,2669..4093)
FT                 /product="BEL-175_AA-I_1p"
FT                 /translation="MPMSTRNAKSAARGTSHCQACGKPDTDRMVSCCHCKS
FT                 WWHFECVGVNDSIAETDRTFTCPKCQQPPLVNPATNETTNAGKPASKPSSE
FT                 ASGRTSSSVRARRAQLQLEKLEAQKALALKRLELESKKLELEAEVLEESFR
FT                 LREEIEREERSDTSSVTSQQSSRSKVEEWQKKQDEILSSTIVTTTATGTEA
FT                 NLQQRIATTTAIGGRQGSRAQPAGNILSGALAGISLKDTASEVTLGGMIGR
FT                 TSETIPQIGTSSKLGLSSVPPVFDTPSVCESNKRSLGLSYPLPTHDRPQNE
FT                 SVRPYSNNTRTGRVELLPRSDRRFGDFDNVRNVDPDPREASEPLRQIPGRP
FT                 LLSRCQPAEDPGVRFMANPDEQSGDFTRGTVMPSWGPSPQQIAARQVIAKE
FT                 LPTFTGHPEDWPLFISSFTNTTQACGYSEAENLARLQRCLKGNALEAVRSR
FT                 LLLPEAVPHVIATLETLYGRPELLIHTLLQKVRGAPAPKQDRLDTLIGYGM
FT                 AVQNLCDHLEAGGHHAHLNNPMLLFELVDKLPANMKLDWSLYKQRCAEANI
FT                 RAFSQYMTTLVRAATDVTLHYDPKHQSQQPPPQRGGKSGKDKDFCGAHSSE
FT                 EALKTPVKEEQIVGGKVEPSDPACLVCKDPAHRVKNCSVFAKKTLEERWKL
FT                 TGLLGLCRICLGLHGKRPCRIRQKCEIDGCQFRHHALLHSKQRPSDTKEKT
FT                 DPKPTGSNVITNHHSAGRAVLFRIIPVKLHGNNGTVATYAFLDDGSAKTLV
FT                 DEEIVKQLGVTGETLPLCLQWTANVKRVEADSQMVALDISGESGTSRFALK
FT                 DVRTVRKLDLPRQSLRYATLTQEFLHLKGLPITGYEVALPRILIGSDNAHI
FT                 TAMLKVREGLPGEPIAAKSRLGTVYGLQSSNCDRVHSFHICECQNDQTLHD
FT                 LVKEFFSVESLGIDAVACPESAEEQRAKHILQSTTKRIGQRFETGLLWRYD
FT                 RFEFPDSYPMAVRRLQCLERRIRKDPVIGESVVRQWSEYQAKGYIHKATQE
FT                 ELTEADPMRTWYLPLGVAINPKKPSKIRIFCDAAAKVDGISMNTMLLKGPD
FT                 LLNTLLDVLFGFREKRIALCADLKEMFHQIQIRPEDRHAQRLLWREDPSQT
FT                 PDVYLMDVATFGATCSPCSAQFVKNKNAEEHAPEYPEAAEAIIRKHYVDDY
FT                 LDSADSVDEAVKIASDVRHVHSLGGFHLRNWLSNSKEVLARVGESNAIAEK
FT                 SLQLDKNSSTERVLGMFWKPEEDVFTFSTTLPVDRDHPTKREALRVVMSPF
FT                 DPAGLLCFFLIHGKMLIQELWRSKTDWDQRIPMQLKEMWTRWTNMFERLDE
FT                 VRVPRCYFPQHGQNEIVDLQLHIFVDASEEAYACVAYF"
XX
SQ   Sequence 6123 BP; 1622 A; 1411 C; 1793 G; 1297 T; 0 other;
     atctataaga tttactaagg ttagtaggtc attgattaag atgccaatga gcacccggaa        60
     cgcgaaaagt gccgctagag gaacgtccca ctgccaggca tgcggaaaac cggacacgga       120
     caggatggtg agctgctgcc actgcaagtc atggtggcac ttcgaatgcg tgggcgtgaa       180
     tgacagtatc gcggagacgg atcggacgtt cacctgccca aagtgccagc agcccccctt       240
     agtcaaccca gcgacaaacg aaacgacaaa tgcgggtaag ccagctagta agccgagcag       300
     cgaagcgtcg ggaagaacta gctccagcgt tcgagcaaga cgagcgcagt tgcagctgga       360
     gaaacttgaa gcgcagaagg ctctcgcttt gaaacgcctt gagttggaga gtaagaagtt       420
     ggaactggag gcggaggtgt tagaagagtc tttccggctg cgggaagaga tcgagcgaga       480
     agagcggagc gacacaagca gtgtaacttc acagcaaagc tcacgcagca aggtggagga       540
     atggcagaag aagcaggacg aaattttgag ttcgacgatt gtgacgacaa cagcgaccgg       600
     cacggaagca aatctgcagc agagaatcgc gacgacaacc gctataggag gaaggcaggg       660
     cagcagagcg cagccggctg gaaacattct aagtggagcg ttggcaggta tttccctcaa       720
     agatacagct agtgaggtaa cgttaggagg catgattggt cggacgtcag agacgattcc       780
     gcagataggt accagtagta agttaggtct gtcttcggta ccccctgtct ttgatacacc       840
     cagcgtgtgc gaaagcaaca aacgttcact cggtttgtca tatccgcttc ctactcacga       900
     ccgtccccaa aacgaatccg ttcgtccata ttcgaacaat acgcgaacag gccgtgtaga       960
     attgctcccg cgaagtgatc gaagattcgg tgatttcgat aatgttcgaa atgtagatcc      1020
     agatccacgt gaagcaagtg aaccgttgag gcaaatccct ggacgaccgc ttttgtcccg      1080
     atgccagccc gcagaggatc caggagttcg gtttatggcg aatccagatg agcaatctgg      1140
     tgatttcact cgtggtactg tcatgccttc ttggggaccg agtccgcagc agatcgcagc      1200
     gcgacaagtt atagcgaagg agttaccgac gtttacggga cacccagaag actggccgct      1260
     gttcatcagc tcgtttacca acacaactca agcgtgtggg tattcagaag cagagaattt      1320
     agctaggcta cagcggtgct tgaaaggaaa cgcacttgag gcagtgcgaa gtcgactact      1380
     ccttccggaa gcggttccac atgtcatagc cacactcgag acattgtacg ggagaccgga      1440
     gctgctaata cacacgttgc tgcagaaggt ccgtggagct ccagcgccga agcaagaccg      1500
     gctcgacacg ttaatagggt atggcatggc agtgcagaat ctctgcgatc acctcgaagc      1560
     tgggggacat catgcgcatc taaacaatcc gatgcttctt ttcgagttgg tggacaagct      1620
     gccggcaaac atgaagctag actggtcgct gtataaacaa cgatgtgcgg aggcgaacat      1680
     tcgcgcattt tcgcagtata tgacgacctt ggtccgagcg gcaacggatg taacgctaca      1740
     ctacgaccca aagcatcaat cacaacagcc cccgccgcag cgaggtggaa aatctggtaa      1800
     ggacaaagat ttttgtggag cgcactcttc ggaggaagcg ctgaagacac cagtaaagga      1860
     ggagcaaata gttggcggaa aagtcgaacc atcggatcct gcgtgtctcg tctgcaaaga      1920
     ccctgctcac cgggtgaaga attgttccgt gttcgctaag aagactctag aggagcgatg      1980
     gaaattaacg ggactgttag gattgtgccg gatttgcctg ggtctacacg gcaagcgtcc      2040
     gtgcagaatt cggcagaagt gcgagattga cgggtgccag tttcgacacc atgctctgct      2100
     gcattccaag cagaggccta gcgataccaa ggaaaagact gatccaaaac ccactggatc      2160
     caatgtgatc accaaccatc attccgccgg tagggcggtt ctgttccgca taattcctgt      2220
     gaagctgcac ggcaacaacg gaactgtggc aacctacgcg tttctggacg acgggtcggc      2280
     gaaaacttta gttgacgaag agatcgtgaa gcagttgggc gtcacaggcg aaactctacc      2340
     actttgccta cagtggacgg cgaacgtgaa gcgagtggaa gcagattcgc agatggtagc      2400
     gttggacata tcgggagaga gtggaacttc aagatttgca ttgaaggatg tgcgtacagt      2460
     gcgcaaactt gatctaccgc ggcaatcgct gcgatacgcc acgctgacac aggagttcct      2520
     gcacttgaag ggacttccga ttacgggtta tgaagttgct cttccacgaa ttcttatcgg      2580
     cagtgataac gcgcacatca ccgcgatgtt gaaggttcga gaaggactgc ccggagaacc      2640
     tattgcggct aaatcacggc tcggatagac ggtgtacgga ctgcaaagct caaactgcga      2700
     ccgtgtgcac agtttccata tctgtgaatg tcagaacgat cagacattgc acgatctcgt      2760
     gaaggagttc ttctctgtgg agagcttggg aatcgatgct gtagcatgtc cggagtcagc      2820
     ggaagagcag cgagcgaaac atattctgca gagcactacc aagcgcatcg gccagcggtt      2880
     cgagaccgga cttctttggc gatacgatcg ttttgagttc ccggacagtt acccgatggc      2940
     ggttcgacgt ctgcaatgct tggagcggcg cattcggaag gatccggtga ttggtgaaag      3000
     tgttgtcagg caatggtccg aataccaagc aaaaggctac atccacaaag cgacgcagga      3060
     ggagctcact gaagcagatc ctatgcggac gtggtatctt ccattaggag ttgccatcaa      3120
     tcccaaaaag ccgtcgaaaa tacgaatctt ttgcgacgcg gcggctaaag tggacggcat      3180
     ctccatgaac acaatgctgt tgaagggtcc ggatctcctg aatacattgc ttgacgtctt      3240
     gttcggattt cgggagaagc gtatcgcact atgcgcagat ctgaaggaga tgttccatca      3300
     gattcagatt cggccggagg accggcatgc ccaacgattg ttatggcgtg aagacccatc      3360
     gcaaaccccg gacgtgtacc tgatggacgt cgccacgttc ggagccacct gttctccgtg      3420
     ttcggcgcag ttcgttaaga acaaaaacgc cgaagagcat gcacctgagt atccggaagc      3480
     agcggaagca atcattcgga aacactatgt ggacgattac ctcgacagcg cggacagtgt      3540
     cgacgaagcg gtgaagatag catctgatgt ccgacatgtc cactctctcg gaggattcca      3600
     cttgcgcaat tggctatcaa actcgaaaga ggtgctcgca cgagtcgggg agagtaatgc      3660
     gattgctgag aagagtctac agttggacaa gaacagctcg acagaaagag tgctcgggat      3720
     gttctggaag ccggaagaag acgttttcac cttttcaact actttgccag tcgataggga      3780
     tcatcccaca aaacgggaag cgttacgagt cgtgatgagc ccgttcgatc ctgctgggtt      3840
     gctatgtttt ttcctaatcc atggaaagat gttgatccag gagctatgga gatcaaaaac      3900
     tgattgggac cagcggatac cgatgcagct gaaggaaatg tggacgcgct ggacgaatat      3960
     gtttgagcgg ttagatgaag ttcgcgttcc tcggtgttac tttcctcagc acgggcagaa      4020
     tgaaatcgtg gatctgcagt tgcacatctt tgttgatgcc agcgaagaag cgtacgcttg      4080
     tgtggcgtat ttttgagcgg agttcgtaga cggtatagag atggcattga tcggaggaaa      4140
     agcgaaggta gctccgctga aggcgctatc gatcccaaga ctggagctga tggcggcggt      4200
     gatcggggtt cgcctactga aaaccatacg taacggacat tcgatgaaga taggaagaac      4260
     gaccatgtgg agtgattcga agacggtatt ggcatggatc aactcggacc atcgtagtta      4320
     ccgacaattc gttgcatgcc gtgtagggga aatcctttct aagtcggacg tagcacaatg      4380
     gcgttgggta cctactaagg aaaatccagc agatctggcg acgaagtggg gaaaaggacc      4440
     atgcctatct cccaatagtc gttggttcaa cggaccgagc tttctgcgtt tgccagaaac      4500
     ggagtggccc accggtgtga aaccgatgga ggaaacaacg gttgaagagc tccgagaatg      4560
     tctagtgcac acggaagcga ctaggatgtg ggtggtggat tggcagcgat tttcaaactg      4620
     gaaccgccta ttgcgttcgg tagcctatgt ccatcgattt tgtgcgaatc tgcagcggaa      4680
     agtgaagaag gagccgcaag tgaccggagc gttgaggcag cacgaaatag cacaagcaga      4740
     gatgaccata tttcggctgg tgcaaagcga gcagtatccc gacgagatgg caatcctttc      4800
     cgatgcgttg aacgagaacc gcacaaagtg cggcaaactg gagcggacaa gcaaaatccg      4860
     aacgttgtcg ccgtacatgg acgatagcgg agtaattcgt gcggagtcca ggatttccgc      4920
     tgctaccttt gtgtcatacg atacgagatt cccgattatt cttccgaagg ctcatgtagt      4980
     cacccgattg ctgctggaat ggtatcatcg gagattcctg catgctaata atgaaacggt      5040
     agttaacgaa gttagacagc ggttccatat atcagctctg cgcgtcgcag tacgagaggt      5100
     aacgaagatg tgtacgttat gcaaagtgaa gaaggcagtt ccagcagttc ctcgaatggc      5160
     gcctctccca gctgcgatat tgaaacccta cgaacgaccg ttttcgtacg tgggactcga      5220
     ttatttcggg ccgatcttag ttcgggttaa ttgcagcact gtcaagaggt ggattgcact      5280
     attcacgtgc ctcacaactc gtgccgtaca cctggaggtc gcaaactcgc tttcgactga      5340
     atcgtgcaag caagcgatac gacggttcat tgggcgcaga ggcgctccag tggagatacg      5400
     cagtgacagg ggtacgaatt tcgtaggggc gaacaacgac ttgcgcaagg agatgatgga      5460
     aatggatcaa caactcgcag agacattcac caacacttat acccgatggg tgttcaaccc      5520
     gccagctgcg ccgcatatgg gtggcgcttg ggagcgtttg gtgcgttcgg tcaagacagc      5580
     gatagcggcg atacagacga ccgagattcc gaaggtttgg cgacatttgt ggtagaagca      5640
     gagagcgtag ttaactcgag acctctaacg ttcattccat tagagacgga gcagcaagag      5700
     gcccttacgc cgaaccattt tcttttgctg aattcaacgg gagtggtgca atctccgaag      5760
     acgttaacgg agccgatggt gtgccgcgga agttgggagc tctgccgctc tatggtggac      5820
     caattttgga gaagatgggt aacagagtat ctgccgatca tcgctcgccg aaccaagtgg      5880
     tttgaagaag tgaagccgat tgaagttggc gatttggtca tcgtggtgga agagaaggtc      5940
     agaaacggtt ggctacgtgg aagagtagtg aaggtgaaag aaggaagtga tggcagagta      6000
     cgagcagccg tcgtgcagac agcaggcggg ttgatggaga ggccggtagc taagatagcg      6060
     cgactggata tagtagacag taaagctgat tagatgtcca accagcctta cgggtcgggg      6120
     aag                                                                    6123
//
ID   BEL-175_AA-LTR repbase;    DNA;    INV; 501 BP.
XX
AC   supercont1.27;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-175_AA_;
KW   BEL-175_AA-I; BEL-175_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-501
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.27; Positions 1378046 1378546.
XX
SQ   Sequence 501 BP; 186 A; 82 C; 95 G; 138 T; 0 other;
     tgttgcggtg taatgtacca aacccattcg cgcgaggtag aatgaaaatc tggcagcaca        60
     gttgctgctt gactgccgat agggcacatg ggtatagctg ccgatagggc aatgaaagga       120
     aaagagcaaa acaaaacaga attgtgtagt catcgtaatt gagtggattt ttatttcggt       180
     tgaatttact tgttagcaaa ttgaatttta ttaataagcc tatttaaata ctggtaaatt       240
     gtaagtacac aaatgaatta cactaaaatt aaacctaaac attgaaactc aacaattaca       300
     cagctttgga acacacgatt gaagttgtta cgacaagacg gatcagttac agcaaaggac       360
     tagtaaatgt aggtaaaatc atttgtctaa attaacctaa aataacaaat taaaacatta       420
     aattacagct tatagctaac tcccatccaa ataacgagtt tgcttattag aggtccgaag       480
     atatccgtac gtgtgacaac a                                                 501
//
ID   BEL-176_AA-I repbase;    DNA;    INV; 5680 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-176_AA_;
KW   BEL-176_AA-LTR; BEL-176_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5680
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions 2939314 2944993.
XX
CC   'CATAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           637..4845
FT                 /product="BEL-176_AA-I_1p"
FT                 /translation="MKEEEARLKKLQAEEELKLKQVEEAAKLKQLDEEQEY
FT                 LKQRYNLLMQIEDEKEPSSRRSGISQKSRRTGVNVKSKRDQLEKWLKGAAV
FT                 DEVGQSKPVASGYQAVPQVQTVSESVQSPVVINELQSPALTVPNSLSQVSA
FT                 SSNMNHLCLPASGKVPTLAKSYEQFVSGQVVSSVSTVPVSIPFRSADPTAS
FT                 DTLLSGMQGLRICNEPNAAVLPTVTLPARDAVAHSELNATAQVSVYSSGLM
FT                 PAVYGSHPYYTAAPMGLRASINAAVPGEVAQVSQSQSSFGRVPPPEFAVSS
FT                 TVGHGNGPFSNPAAPVVTNMFRPPLASIGLPDSGLYEVRASSAVGPSSAQL
FT                 AARQVMPRELPKFNGDPQEWPIFYSSFKNTTEVCGYTDAENLARLQRSLGG
FT                 SALEAVRSRLLLPASVPYVMDTLHKLYGRPEILISSLLKKVRNVPPPKAEN
FT                 LSSIVAYGLAIQNLVDHIVLADQQAHLSNPMLLQELIDKLLTSLKMQWGTY
FT                 KQSVGYINLATFNSFMAGLVNLASELPVDVDSAQNHYKQIRAEKSKQKEKL
FT                 FTHANESSDFPKKEKEASIERTTAKACSYCGNENHQILNCSSFKSLDIGAR
FT                 WKAMRQKNLCRLCLVPHRKWPCHSKKECGVDGCRIRHHKLLHSSQTSRNEP
FT                 VETTKPTEAVHHNFHHTKSFSLFRYLPVTLHGDGKSVETYAFLDDGSSSTL
FT                 LEEAIAAQLGIEGELDNFWLGWTGKIGRHEKSSRRVCLEISGAGKQNTFQL
FT                 SNVRTVRELGLPSQTLNYTDLSRVYPHLQGLRVSSYIDAKPGIIIGIEHVH
FT                 LITSLKIREGGRSDPVATKTRLGWCIYGRNSGTEASVEQLNLHVGQEMSNS
FT                 DLYDSMKKFFAVEEAVVTSTIESEEDKRARSIMEATTVRRGSRIETGLLWR
FT                 NNDVQFPESYKMAMNRLLGLEKCLSRDPELQRRVNEQIDSYEQKQYISKAS
FT                 QEEVDSLNPHRVWYLPLGVVINPKKPNKTRMVWDAAAKVGGVCFNDMLLKG
FT                 PDLLVPLMNVLLRFRQGKVAVCSDIREMFLRILIRDEDKWSQCFLWRTSPD
FT                 EEVQVYVINVAMFGATSSPCTAQFMKNWNASEFSEQYPRAVEAVTKNHYVD
FT                 DFLDSVDSVEEAVTLVEQVQQIHAAAGFQFGKIVSNEQEVLDRLGESSSST
FT                 SKPLPLDKDRTYERVLGVMWSPSEDIFTFSQQAVEEVLDTSWAVPTKRQIL
FT                 RIVMKLYDPLGFVAHFVVHGKILMQEIWRTGTNWDEPIAEQLHELWTRWIE
FT                 QYRNINEVNVPRCFFKSFWPQQISNIQIHVFTDASVSACACVAYVRMTVNG
FT                 ESQCSLIAAKTKVAPLRSLSIPRLELQAAMMGSRLLQNMCSALTISIQRRF
FT                 LWTDSATVLSWLRSDSRRFHQFVSFRVGEILALTSVDEST"
XX
SQ   Sequence 5680 BP; 1612 A; 1236 C; 1491 G; 1341 T; 0 other;
     tttctacaaa gaatttcatc cgaagttgga tgattgttgc ccgtcgggtg tcgctaccaa        60
     gttgtgctgc aaccgggaag acgtccgcca accgaacgac ccacagttga agactgaaca       120
     tcatcatccc agccagtacc ggacccggag gtttgattgc atcgaaacac aagtcagtag       180
     tcagcttttc tatttcgtgc ctttaccaca gtcgtggtta ctgcagtacg gcagttaagt       240
     tagcttgtcc tatagatagc ttagtaggcg aattattaga ttttattatg ccaaaaaagg       300
     gcaaaaacgt taccaatacg gaagggatat ataagccatg caaaatatgc aatcagaaag       360
     agggtgatga taactgggtc tgttgcgatg ggtgggtcgt gggaacactt tcaatgcgcg       420
     ggtgtcaatg agtcaatcgc ggaaaaaagt tgaaaatgcc gtgactgtct cgccgattgg       480
     gacggtactg atattacgtt aaaatcggga gtgtccttta atgaatcttc agtgagtacg       540
     agcagtagtc gtgcgtctca aagattgcaa cttagtctgc agcacctgga ggagcaacgg       600
     aagctgagca aactgcgcgc agcggaagaa ctgaagatga aagaagaaga agctaggctg       660
     aaaaagctgc aagcggaaga agaactgaag ctgaaacaag tagaagaagc agccaaatta       720
     aagcagctgg atgaagagca ggagtatctg aagcaaaggt acaatttgtt gatgcagatt       780
     gaggatgaaa aggaaccatc gagtcgacgt agcggaatta gccagaaaag tagacggact       840
     ggagtgaacg tgaaaagtaa gcgtgatcag ttggagaaat ggttgaaggg agctgctgtg       900
     gacgaagttg gtcagtcgaa accagttgca tcgggatatc aagctgttcc acaggttcaa       960
     acagttagtg aatcggttca gtctcctgtt gtgattaacg agttgcaatc accagctctt      1020
     acggttccaa atagtttgtc gcaggtttcc gcttcgtcta acatgaatca cttgtgtctt      1080
     cctgcatcgg gaaaggtccc tacattggcg aaatcctatg aacagtttgt atcagggcaa      1140
     gtagtctcct cggtgtcaac tgttccagta tcgattccgt ttaggtcagc agatccaaca      1200
     gcttcggata cgctgctttc gggaatgcaa ggtcttcgaa tttgtaatga gccgaatgca      1260
     gcagttttgc ccactgtcac attaccggcc agagatgcag tagctcattc ggaattgaat      1320
     gcaacagcgc aggtttctgt ttattcgagt ggtttgatgc cagcagtata tggaagtcat      1380
     ccgtactaca cagccgctcc aatgggactt cgtgcatcaa taaatgcggc agtaccggga      1440
     gaagttgctc aagttagcca gtcgcaaagt agtttcggtc gtgttccacc tccagaattt      1500
     gcagtcagtt caacagttgg gcatggaaat ggaccttttt caaatccagc ggcaccggta      1560
     gtgacaaata tgtttcgacc accattagct tcgattggat tgccagattc tggtttgtat      1620
     gaagtacgag ctagttctgc agtagggcca tcaagcgctc aactggccgc taggcaggta      1680
     atgccccgtg agctgccaaa gttcaatggc gatcctcagg agtggccaat cttctacagt      1740
     tcattcaaga acacgacgga ggtttgcggg tatacagacg ctgaaaattt ggctcgtctg      1800
     cagcgaagtt tgggtggctc tgctttagaa gcagtacgaa gtcgtctgct gctaccggct      1860
     tccgtgccat acgtgatgga tacgcttcat aagctgtacg gaagaccgga gatactgatc      1920
     agttcgcttc tgaagaaagt tcgcaacgta cctccaccta aagcagagaa tctcagttcg      1980
     attgttgcct acggcctggc gattcagaat ttggttgatc atatcgtact ggccgaccaa      2040
     caggcgcatt tatcgaatcc aatgctgctc caagaattga tcgataagct gctaacctcg      2100
     ctgaagatgc agtggggaac ctacaagcaa tcagttggtt acatcaacct ggcgaccttc      2160
     aacagcttca tggctggact cgtgaatcta gcgtcagaac tcccagtcga tgttgattcc      2220
     gcccaaaatc actacaaaca aattcgggca gaaaagtcaa agcaaaagga gaagttattc      2280
     actcacgcta acgagtcttc tgattttccc aagaaggaga aagaggcgtc aattgaacga      2340
     acaacagcga aagcctgctc gtattgtgga aacgaaaatc atcagattct aaactgttcc      2400
     agtttcaagt cattggatat cggagcgaga tggaaagcga tgcgtcagaa gaatttgtgt      2460
     cgtttgtgct tagttcccca tcggaaatgg ccttgtcatt caaaaaaaga gtgcggcgtg      2520
     gatggttgtc gtattcggca tcacaagctt ctacacagca gtcagaccag ccggaacgaa      2580
     cctgtggaga caacaaagcc aaccgaagca gtgcatcaca acttccacca cacgaaatcc      2640
     ttctcgctgt ttcgatatct accggtcaca ctccatggtg acggaaagag tgtagaaaca      2700
     tacgcattcc tggatgatgg atcgtcgtcg acactgttgg aggaggcgat cgcggctcag      2760
     ctgggaattg aaggagagct ggacaacttt tggctaggat ggaccggaaa gattggcagg      2820
     catgagaaga gttctagaag agtctgtctg gaaatttctg gtgctggcaa gcaaaatacc      2880
     ttccagttga gcaacgtacg aacggtgcgt gagcttgggc ttcccagtca aaccttaaac      2940
     tacaccgatc tgtcgagagt ttatccacat ctacagggtc ttcgagtcag cagttatatc      3000
     gatgcaaaac ctggaataat catcggtatc gagcacgtgc atctcataac cagtctgaag      3060
     attcgtgaag gaggcagaag tgatccagtg gctacgaaga ctcgcctcgg ctggtgcatc      3120
     tacggaagga attccggaac cgaagcatcc gtggaacagt taaacctaca cgtcggacaa      3180
     gaaatgagca acagtgactt gtacgattcc atgaaaaagt ttttcgccgt cgaggaagct      3240
     gtagtgacat cgacaatcga atccgaagaa gacaaacgag ctcgcagtat catggaagca      3300
     acaacagtac gtcgtggatc aagaatcgag acaggtttgc tatggcgcaa taatgacgtc      3360
     cagtttccgg aaagctataa gatggcaatg aacagactct tgggattgga gaagtgtttg      3420
     tccagagacc cagagcttca gagaagggtg aatgagcaga tcgacagtta tgagcaaaag      3480
     cagtacatca gtaaagcatc gcaggaagaa gtcgacagtc tgaaccctca ccgagtttgg      3540
     tatttacctc tgggtgtagt gatcaatccc aagaaaccaa ataaaacccg tatggtttgg      3600
     gatgcggctg caaaggttgg aggagtctgc ttcaacgata tgctgcttaa ggggcctgat      3660
     ctcctcgtac cgcttatgaa cgttctgcta cgattcagac agggcaaagt cgccgtatgc      3720
     tctgatatcc gggagatgtt tctgcggatt ctcatccgcg atgaagacaa atggtcgcaa      3780
     tgctttctgt ggagaacaag tcctgatgaa gaagttcaag tttacgtgat caacgttgcg      3840
     atgtttggtg ctacaagctc tccatgtaca gcgcagttca tgaaaaactg gaatgcgtca      3900
     gaattcagtg aacagtatcc tagggcagta gaagcagtaa ctaagaacca ctacgtagat      3960
     gatttcctcg acagcgttga ctccgtggaa gaggcagtaa ctctagtgga acaagtgcaa      4020
     caaatccatg cagctgctgg tttccaattc gggaaaatag tgtccaacga gcaggaagta      4080
     ctagaccgac taggagaatc gagttcatcg accagtaagc cactgccctt ggacaaagac      4140
     cgaacatacg aacgcgtcct gggcgtgatg tggagtccat cagaagacat ctttacgttc      4200
     agccagcaag cagttgaaga ggttctggat accagttggg cagttccgac aaaacgacaa      4260
     attctgcgga ttgtcatgaa actgtatgac ccattaggat ttgtcgcaca cttcgttgta      4320
     cacggcaaaa ttctgatgca ggagatttgg cgcacaggga caaactggga tgaaccaatt      4380
     gcggagcagt tacacgagct gtggactaga tggatcgaac agtaccgaaa cataaacgaa      4440
     gtgaacgttc cgcgctgttt cttcaaaagc ttctggccgc agcaaatcag caatattcag      4500
     atccatgtct tcacggacgc tagtgtgtca gcctgtgcgt gtgtggccta tgtaaggatg      4560
     acagttaacg gtgagagcca atgctcgtta atagctgcga aaacaaaagt tgcacctctt      4620
     cgatcgcttt ctattccgcg tttggaatta caagctgcca tgatggggtc tcgtctgcta      4680
     caaaacatgt gttcggctct gactatcagc attcaaaggc gcttcctgtg gacagattca      4740
     gcaacagtac tttcatggct tcgctccgac agtcgtcgat ttcatcagtt cgtttcattt      4800
     cgtgttggcg aaatcttggc cctcaccagt gtagatgaat ccacctagag ttggcacaca      4860
     gtctgtcaac caagtcatgc attatggcct ttaggcgatt cgtcaaccga cgaggggctc      4920
     cgctagaggt cttctcagac aatggtacaa attttgtagg agccagtcgc cagttgtctg      4980
     aagaaatgca gaaaatccag gcaatcaacg aagactgtgc atctacattt accaacgctc      5040
     gcacacagtg gcatttcaac gttcctgcag ctccacacat gggaggacct tgggagcgga      5100
     tggtgaaatc agtaaaagtg gcaatggcag caatatcgga cagtccacac cacaccagcg      5160
     acgaggtatt cgaaacaata atgctggaag ctgaaggaat cgtaaactct cgcccgctga      5220
     cttatgtacc tttggaagca gcagatcaag aagctcttac tccgaatcac ttcttgttgt      5280
     acggttcaag cggagtcaaa cagccaacag atcagtcagt cagcctccga gacagttgga      5340
     cagtcactaa gaacattgtg gacgagtttt ggcgcagatg ggtgttggag tacttgccga      5400
     tgttgactag aaggtcgaag tggttcgaga aagtgaagcc gttggagcca ggtgatctag      5460
     tcgtaatcat cgacgagaag acaaggaata gctgggaaag aggacggatt ctggaagtat      5520
     cttcggataa atcaggtcaa gtgcgacgtg cagtagtgca gacagctagg ggagtgtttg      5580
     ccagaccggc tgtaaagctg gcagttttgg acgttgcagg tggcaacaaa gggtcagagg      5640
     aaatcgctcc ggaaacggaa gtggttcacg ggtcggggaa                            5680
//
ID   BEL-176_AA-LTR repbase;    DNA;    INV; 496 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-176_AA_;
KW   BEL-176_AA-I; BEL-176_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-496
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions 2938818 2939313.
XX
SQ   Sequence 496 BP; 154 A; 96 C; 110 G; 136 T; 0 other;
     tgttaccggc aacactgttg acggcgaaac ggtggtgaaa ccactgtccg ttccctcgca        60
     actgagcggt tctcgcggag tggaatgaca gttcgcgccg ttcccgatac aacagagaag       120
     acaaattcat tgatacagat gcatagcata cgtctataca gcacaattag tcagcatttt       180
     gaccgagcag agtgtgaaat ttgtgaagaa tataccgatt tttggatgct cagtaagatc       240
     agtttgctgc tacagtcaac gccgtaaagt tagtgaagga atcagtcagt tgaggtacgt       300
     ttagaaattg tacggtctac gttttccccg gataccgata tacctgtaca gtaggacaca       360
     gcaaaatact gaaattgtaa gaacccattt gtatacttaa ttaatttaaa ctaaaatgaa       420
     tttaaaataa atttcagctt tgtagctgct aagtctgcaa ctagaagaac ggtgtttgtt       480
     ctgacattcg ggaaca                                                       496
//
ID   BEL-177_AA-I repbase;    DNA;    INV; 6922 BP.
XX
AC   supercont1.8;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-177_AA_;
KW   BEL-177_AA-LTR; BEL-177_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6922
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.8; Positions 2744433 2751354.
XX
CC   Positions [5975-6532] - Integrase core
CC   'CCGAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..6922
FT                 /product="BEL-177_AA-I_1p"
FT                 /translation="MNLQSNVRQTRSRTRAFQQENADPTPPGEDDKVSNAS
FT                 SDVSFVPSMLDNDGGELRCCVGCDRPNNAEKYMVQCQKCTLWYHFSCANVS
FT                 TATVRMTTFECKKCRPSGDPLVPARTVSVASGISSSSSACRARIDRELKRL
FT                 DEEKKLMEDLSRERIEMERALQERRLQEKLDRERQFIARKHELLSQQDGEE
FT                 GSVRSMRSSRSSTKRTEDWVRQSVGRTAENSGRNVVEPITSIATISDLPDD
FT                 VRSENPQIVQHSSTPLKATTSTVPPLTGNAIRDAGSEAKSIARTLGSITIG
FT                 DESEVSLEGAVGGDADNEDKGPSNLPFVDLQPYTDLLKVEEVPPAGVDPRI
FT                 NRFGSHCYKRWSVQTGELRSQIALQQQQHTEAERRAMQELAVKHQVDIDER
FT                 RQREVDLVHRIKSLQLQHNAELKLVRNSEEGLRVQLNKRDSEWLDLKNQIQ
FT                 ILEKRLVEEKERMCTSEKDLHDQLMESKRECEALRLQVAELESEIQCLREA
FT                 ELQLQSQIDSSRQRENEAIRLRRVAEKEYWDLHDEVQQIINRNEDHSTSGD
FT                 CSPPLPPPPLSWFESMNASNTDTSSLPHPPPPPICVDDGLPYDRRETIANV
FT                 GAFGERINIPAPIPFTSTTVHPEVHPQLATHHLVPPYVSNQCGPSPQQIAA
FT                 RQVVTKELPVFSGDPIDWPLFISSYQHSTDTCGYTNSENLLRLQRSLRGSA
FT                 KDSVSSFLLHPSTVPQVLSTLQQLYGRPEQIVNNMIAKVRATPPPKPDRLE
FT                 TLVSFGLVVQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFSWALYQE
FT                 QVPVVDLNVFSEYMAKISSAASGVTQLASFPQKAPKDERSRQKERSFVNTH
FT                 VSMNQPKANRREEVNKSVTNNEKQNERDAGNINVKSCSMCNAGSHQIEHCT
FT                 SFKSLDLDGRWKAVKANKLCARCLTSHACWPCKGEVCGINDCPKRHNRLLH
FT                 FEPPAVAKATNAVVTVHRQLSSSTLFRILPVTLFGRNGKVDTFAFLDDGSS
FT                 VTLVERSIAEALGVNGEIETLHIEWTGGINKTIVGAEVVAMEISEAGGNKR
FT                 YKLSEVYTVDNLGLPRQTTDYTELAARFAHLKKLPVKSFRSAEPGILIGQS
FT                 NSHLLATLKLREGKLDEPIATKTRIGWAVCGSLRNAQSNTTHRQLHIAEPT
FT                 LGDLHEYVRRFFDIESLGVAIVPAVIGTEEQRALHILEATTRRLPGDKFET
FT                 GLLWKHDYVEFPDSWPMAERRFKCLEKRLAQKQDLYESVRRQIADFKAKGY
FT                 IHEATATEMEGFDLRRTWFLPIGVVVNEKKPGKVRVIWDAAAKVDGVSLNS
FT                 MLLKGPDLLTPLLSVLFPYRERQVAVSADIKEMFLQILIRQQDRSALLFPY
FT                 RESPQLPMSIMVSDVAIFGAACSPAHSQYIKNLNATEQEVELPRGSAAVKK
FT                 KHYVDDYVDSFDTSEEAFEVAKEVIEVHRRAGFYIRNWMSSDKSVLEKLGE
FT                 VSQEPSKAMLPEKDISFERVLGLAWMPEEDVFTFSLKFCEKVQALLESSQI
FT                 PTKRELLRLVMSIYDPLGLVASFVIQGKILIQEVWRTETGWDCQIPLEIAP
FT                 RWTEWISVLKKMDGLRIPRCYFPGYDPESFKNLELHVFVDASAQAFAAVAY
FT                 FRIIDRGQIRVALVSSKTKVAPLRALSIPRLELMAALLGVRLRKTVEKNHS
FT                 LKIQKTFFWSDSSTVCSWIKSDTRRYRQFVAFRVDEILSLSSVDEWRWIST
FT                 KVNVADEATKWGKGPTYNVESRWFLGPAFLYSNDEDWTNNPAEGIDESDRE
FT                 LREAYVCSHLIRQPLVNAERFSRFDRMLRSVAYVHHFVECLRTTKSRSADI
FT                 VGLTSSDIQKAERTLWTLAQSDAFPDEVAILKKNLERSRENRKQIETSSSL
FT                 SKLSPFVDEFGTLRVGSRGTEAQVLAYDTKYPIILPRSHRITDLLLDFYHR
FT                 KYGHANDETIVNEVRQKFHVPRLRVEVRLARKRCMWCRVYKARPVAPKMGP
FT                 LPAIRFEPGVRPFTYVGVDLFGPYLVKVGRSVAKRWVCLFTCLTIRAIHLE
FT                 VVTSLSTDACKKAIRRFIARRGSPLEIYSDNGTNFVGASRELQDEIKKIHT
FT                 ELGSTFTNVQTQWRFNPPAAPHMGGCWERMVRSVKSALGSVPVERKLDDES
FT                 FATVLAEAESMINSRPLTFIPLETADQESLTPNHFLLLSSSGVREPEKFPM
FT                 DAGMALRSSWNLVKHTLDNFWRRWLIEYLPTIIRRTKWFKDVRPIEVGDLV
FT                 LVADENVRNRWIRGRVIRTIPGKDGVVRQAEVRTMGGILKRPATKLAVLDV
FT                 VGTGDANPELEATREGG"
XX
SQ   Sequence 6922 BP; 1957 A; 1522 C; 1844 G; 1599 T; 0 other;
     gattctcaaa gattttaatc ggaccataat gaacctccag agtaacgtgc gacagactcg        60
     gtcgagaacg agggctttcc agcaggagaa tgctgaccct actccgccgg gtgaagacga       120
     taaggtgtcg aatgcgtcgt cggatgtttc gttcgttcca tccatgttag acaacgatgg       180
     aggtgagtta cggtgttgtg tcggttgtga tcggccgaac aacgcagaaa aatacatggt       240
     acaatgtcag aagtgtactc tgtggtacca tttctcctgt gcgaatgtca gcacggctac       300
     ggtacgtatg actactttcg agtgtaagaa atgtaggcca agcggtgatc cgcttgtacc       360
     ggcgagaacg gtgagcgtag caagtggaat ttctagctca tctagtgcat gcagggccag       420
     aatcgatcgt gagctgaaac gtctggacga agaaaagaag cttatggagg atttgagtcg       480
     tgaaaggatc gagatggagc gagctctgca agaacgtcga cttcaggaga aattggaccg       540
     agaaagacaa ttcatcgcac ggaaacatga gttgttaagc cagcaagatg gtgaagaggg       600
     tagcgtacgt agtatgcgta gtagccggag tagtaccaag cgcacggagg attgggtcag       660
     gcagtcagtt ggtagaacgg ccgagaattc cggccggaat gtcgtagaac cgattacgtc       720
     aatcgctacc atctctgacc taccggacga cgtacgatca gaaaatccgc agattgtaca       780
     acattcctca acaccactga aggctaccac atccacagtt ccaccactca ctggtaacgc       840
     tatacgggat gcaggatcag aggcaaaatc gatcgcacgc acgctcggaa gcattacgat       900
     tggagatgaa tcagaagtgt ctctggaagg cgccgttgga ggagatgcgg acaatgaaga       960
     caaaggacca tccaatttgc ctttcgttga tctgcagcca tacactgatc tgttgaaggt      1020
     tgaagaagta ccgccagccg gcgtagatcc gaggattaat cgtttcggct cccattgcta      1080
     caagcgttgg agcgttcaaa ctggtgagct ccgaagtcag attgcgttac agcaacaaca      1140
     gcacacggaa gcggaacgcc gggcaatgca ggaacttgca gtgaaacatc aggttgacat      1200
     cgacgaaaga cggcaaagag aagtcgatct ggtgcatcgg atcaaaagtt tgcagttgca      1260
     acataacgcc gagttgaagc tagttcggaa ttcggaggaa ggattacgtg ttcagctgaa      1320
     caagcgagac agtgaatggt tagatttgaa gaaccaaatt caaattctcg agaagcgact      1380
     tgtcgaagaa aaggagcgaa tgtgcacttc ggaaaaagat ttgcacgatc agctcatgga      1440
     aagcaagaga gaatgcgaag ctcttcggct tcaagtggca gaactggaga gtgaaatcca      1500
     gtgcctgcgt gaggcggagc tgcagctaca atctcaaatt gattcaagtc gtcagcgtga      1560
     aaacgaagcc atccgtctgc ggcgtgtagc agagaaagaa tactgggacc tgcacgacga      1620
     ggttcaacag atcatcaatc gaaacgaaga tcattcaaca agcggcgatt gttctcctcc      1680
     gttaccaccc cctccgttgt cgtggtttga atccatgaat gcgtctaata cagatacttc      1740
     ttctcttcct catcctcctc ctcctccaat ttgtgttgat gatggtttac cttacgatcg      1800
     acgagaaacc atcgcaaatg ttggagcctt tggagaaaga atcaatattc ctgctccaat      1860
     tccattcact tccaccaccg ttcatcccga ggttcacccg caactagcaa cccaccatct      1920
     agtgcctcca tatgtaagca atcagtgtgg accatcgcct caacaaattg ccgctagaca      1980
     agtggtcacc aaagagcttc cggtcttctc cggggatcca attgattggc cgctgtttat      2040
     tagcagctat cagcactcaa cggatacatg tgggtacact aattcggaaa atcttctgcg      2100
     gctacagcgc agtttgaggg gtagtgcgaa agactccgtc agtagcttct tacttcatcc      2160
     gtcgactgta ccacaagttt tgtccactct acaacaattg tatggacgac cggaacagat      2220
     cgttaacaat atgattgcta aggttcgtgc gacaccacca ccgaagcctg atcgtttgga      2280
     gacgcttgtt agtttcggct tggtggtcca aaacctttgt gggcatttga aagcggttgg      2340
     cctagaaaga catcttgcaa acccgattct gctacaagag ttggtcgata agctgccggc      2400
     tacagtaaaa ttcagctggg cactctatca ggaacaagtt ccagtggtgg acttaaatgt      2460
     gttcagcgaa tacatggcga agatatcctc agcggctagt ggcgtcaccc agcttgcgag      2520
     cttcccacag aaagcaccaa aagatgagcg aagtcgtcaa aaagagcgat cgtttgtgaa      2580
     cacacacgtc tcaatgaatc aaccaaaagc gaatcgaaga gaagaggtca ataaatcagt      2640
     aacaaacaac gaaaagcaga acgaaagaga tgctggcaat atcaatgtca aatcgtgctc      2700
     gatgtgcaac gcagggagcc accagattga gcattgtaca tctttcaaaa gcctggattt      2760
     ggatggcagg tggaaggcag tgaaggcgaa taaactttgt gctcgatgcc tcacttccca      2820
     tgcctgttgg ccttgcaaag gcgaagtttg cgggatcaac gactgcccga agcgacataa      2880
     tcgtttgctg cactttgagc cgccagcggt ggccaaggct accaatgcag tggtaacggt      2940
     acatcgtcaa ttgtcttcat caacgctttt ccgcattctg ccagtcacgt tgttcgggag      3000
     aaacgggaag gtggacacgt tcgcgttcct cgacgacgga tcgtcagtga cactcgtcga      3060
     acgatcgatt gcggaagctc ttggagtcaa cggagagata gaaacgctac atattgaatg      3120
     gaccggcggt atcaacaaga caattgtagg agccgaggtc gtagcgatgg aaatatccga      3180
     agccggagga aacaagcgct acaagttgtc agaggtgtac actgtagaca atctcggttt      3240
     accaaggcag actacagact acacagagct tgcagcgagg tttgcccatc tcaagaaact      3300
     accagtgaaa agtttcagat ccgctgagcc cggaatcctg atcggacaga gcaactctca      3360
     tctgttagct acattgaagt tgcgcgaggg aaaactggac gagccgattg ctacaaagac      3420
     gagaattgga tgggctgttt gtggtagcct gcgaaatgca caatcaaata cgacgcacag      3480
     acagcttcac attgcagagc caacactagg ggatctgcac gagtatgtcc gccgcttttt      3540
     cgacatcgaa agcttgggcg tagcaattgt gccagccgtg ataggcacag aggaacaacg      3600
     ggcgctgcac attcttgaag cgactacacg acgattacct ggtgataagt tcgagacggg      3660
     cttgctctgg aagcatgatt atgtggagtt tccagacagc tggccgatgg cagaacgacg      3720
     tttcaagtgc ctggaaaaac gtttagccca gaaacaagac ctttatgaaa gcgttcgtcg      3780
     tcaaatagca gacttcaagg ccaaaggata tatccacgaa gcgacagcaa cagaaatgga      3840
     aggattcgac ttgcggcgaa cctggttttt gccgattgga gtcgtcgtga atgagaagaa      3900
     gccaggaaag gttagagtta tttgggatgc tgcagcgaaa gttgacggcg tttcgttgaa      3960
     ctcaatgttg ctgaagggcc ccgatttgct tactccactg ctgtctgtac tgtttccata      4020
     ccgagaacgt caggtggctg tgtcggcaga catcaaagag atgtttctgc aaattttgat      4080
     tcgtcagcag gatcgcagcg ctttgttatt cccttatagg gaatccccgc aactgccgat      4140
     gagtatcatg gtgtctgatg tggcgatttt tggcgcagca tgctcgccag cacactcgca      4200
     gtacataaag aatttaaacg ctacagaaca agaagtagag cttccacgag gttccgcggc      4260
     agttaaaaag aagcactatg tagacgatta cgtagacagt ttcgatacgt cggaagaagc      4320
     atttgaagtg gcaaaagaag taatcgaggt gcatcggcga gcaggattct acattcggaa      4380
     ttggatgtcg agtgacaaaa gtgtactgga gaagctagga gaagtaagtc aggaaccgtc      4440
     aaaggccatg ctacctgaaa aagacattag ttttgaacga gtgttggggc tggcatggat      4500
     gcctgaggag gacgtcttta ccttttcgtt gaagttttgt gaaaaagtgc aagccttact      4560
     ggaaagtagt cagattccca cgaaaaggga actgcttcga ttggtgatga gtatttacga      4620
     ccctttaggg ttagtagcat cgttcgtcat ccaaggaaaa atcctcatcc aagaagtatg      4680
     gcgtacggaa acaggttggg actgccagat cccattagaa atagcgcctc gctggaccga      4740
     gtggatatcg gtactcaaga agatggacgg gttgcgtatt cctcggtgct attttccggg      4800
     ctatgatcca gaaagtttta aaaacctgga gctacacgtg ttcgtggacg cgagtgctca      4860
     agcatttgca gcagtggcat acttccgcat aatagatcgg ggacagatca gagtcgcact      4920
     tgtttcctct aaaacaaaag ttgctccgct tcgggcactt tcgattcctc gactggaact      4980
     gatggcagcc ttgctgggcg ttcgattgcg gaaaactgtc gagaaaaacc attcattgaa      5040
     aatccagaaa accttttttt ggagtgattc atcgaccgtt tgctcatgga tcaagtcgga      5100
     cacgcggcga tacagacagt tcgtcgcttt cagagtcgac gagatattga gcctctcatc      5160
     tgtcgacgaa tggcgatgga tttcaacgaa ggtgaacgtt gccgatgaag ccaccaagtg      5220
     gggcaaaggt ccaacgtaca acgtagaaag tcgctggttc ctcgggcccg cttttctcta      5280
     cagcaacgat gaagattgga cgaacaaccc agcagaaggt atagacgaga gtgatagaga      5340
     attacgcgaa gcgtacgttt gcagccatct aataagacaa ccgttggtga acgctgaaag      5400
     attttcaagg tttgacagaa tgctacgttc agttgcgtat gtccatcatt tcgtggagtg      5460
     tttgcggaca acgaagagtc gatccgcaga tattgttggg ctgactagtt cggatatcca      5520
     aaaagctgaa agaacgttat ggacgttagc gcagtcagat gcgtttccgg acgaagttgc      5580
     tatcctcaag aagaacttgg agcgtagccg agaaaaccgg aagcaaatcg aaacttcaag      5640
     ctctctttcg aaattatcac catttgtaga cgagtttgga acgttgcgag ttggcagcag      5700
     gggaacagaa gcacaagtac tagcctatga tactaagtat cccatcattc tgccgagaag      5760
     ccatcggatc acagatttgc tgttggattt ctatcatcga aagtatggcc atgctaacga      5820
     cgaaactatt gtcaacgagg tgcgccaaaa atttcatgta ccaaggctgc gggtggaagt      5880
     tcgattagca agaaagcgat gtatgtggtg tcgagtttac aaagcaaggc cggtagctcc      5940
     aaaaatggga cctcttccgg caatacggtt tgaaccaggt gtgcggccat tcacctacgt      6000
     gggcgtagat cttttcggtc cgtatttagt gaaagtcgga cgaagcgttg caaaacgttg      6060
     ggtatgcctt ttcacctgcc ttacgatcag agctatccat ctagaggtag ttacaagttt      6120
     gtcgacggat gcgtgtaaaa aggcaatcag aaggttcata gctagaaggg gctccccatt      6180
     ggaaatctac tccgataatg ggacaaactt cgtcggagca agtcgagagc tgcaagacga      6240
     aatcaagaag atccatacgg aattaggcag tactttcaca aacgttcaaa cccagtggcg      6300
     gttcaaccct cctgcagctc ctcatatggg gggttgttgg gaaaggatgg ttcgttctgt      6360
     gaaatcagct ttaggatctg ttccagtaga aagaaagcta gatgacgaat cgtttgctac      6420
     agtacttgct gaagcggaga gtatgatcaa ttcccggcca ttaactttca tccctctgga      6480
     aaccgcggac caagaatctt taacaccgaa tcactttttg ttgctaagtt caagtggcgt      6540
     gcgtgaacca gaaaagtttc caatggatgc agggatggct ctacgaagca gttggaactt      6600
     ggtgaaacat acactggata acttctggcg acgatggttg atagagtact tgcccactat      6660
     tatccgtcgc acaaaatggt tcaaggacgt acgaccaatc gaagttggag atctagtgct      6720
     cgtcgccgac gaaaatgtcc ggaataggtg gattcgtgga cgagtgatcc gaaccattcc      6780
     gggaaaagac ggagtggtac gtcaagcgga agtaaggact atgggaggaa ttttgaaaag      6840
     acctgctacg aagttggctg tgctggacgt tgtaggaact ggtgacgcca atccggagtt      6900
     agaggcgaca cgggagggag ga                                               6922
//
ID   BEL-177_AA-LTR repbase;    DNA;    INV; 436 BP.
XX
AC   supercont1.8;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-177_AA_;
KW   BEL-177_AA-I; BEL-177_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-436
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.8; Positions 2743997 2744432.
XX
SQ   Sequence 436 BP; 145 A; 70 C; 81 G; 140 T; 0 other;
     tgttcgccgc aacagcccct cgtatcgaac acccctactg agcaccatgg tgagctacct        60
     aaaagtcaac agacagtatg agatcttctg gtatgacaat ttaaattgaa tgcgtaggag       120
     attatttgta ttgagaaatc tattttgatc gattgtgaaa ttttctgaat taaaaaggta       180
     caagagtttg aaattaaact gaatttaagt agtattcaat agtacatttt cattatagca       240
     tttttgaagt taaattcatc atctgtttgc gaattggtag tgatacagtt aaatcggaga       300
     ctaaaatgtg agtcgtaata taagtcaaga gagttgaatt gattgctaat aaaattacta       360
     tttacagctt tgagcttaat ctactcctaa aacgagtgtt ctgctgctag acctccgaaa       420
     gaatccgttc gcaaca                                                       436
//
ID   BEL-178_AA-I repbase;    DNA;    INV; 6256 BP.
XX
AC   AAGE02028718;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-178_AA_;
KW   BEL-178_AA-LTR; BEL-178_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6256
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028718; Positions    1462    7717.
XX
CC   Positions [5303-5863] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1013..6256
FT                 /product="BEL-178_AA-I_1p"
FT                 /translation="MTNSEDKVRSWLHRSGEQTEGKISSTSAAKDISNIPK
FT                 NLGDTVINKVRVPRITRKSNYLFELPNEAQAVGNNKDVSYSLHPELTGRNA
FT                 AQGDSGLYDLAENSPTTRQLAARQVMGKDLPTFSGNPEEWPIWISNFERST
FT                 VTCGFSLDENLIRLQRSLKGPAMEMVRCRLLSPASVPHVIKTLQMRYGRPE
FT                 TLIRALTEKIRQLPPPKMDNLNSIVDFGLAVDSLVEHLKTARQQAHLSNPS
FT                 LLHDLVAKLPVEYRLKWSSYKSDIPVVNLATFGSFMSSLVELAFEVMDDQP
FT                 TAAKTVQQKPNNRSFVQTHVEITSADFDSVQSNSNTPANNPAKKVCVVCQK
FT                 EGHKVAKCYTFQAMDIDHRLKVVGQHMLCRTCLNQHGKWPCKTWKGCGIEG
FT                 CRLRHHTMLHTATPAVPFVVSTSHSEPLSTGSPIFRIIPVTLHAKERRMKV
FT                 FAFVDEGSEISLLDVAVAEQLGITGPSSTLSLQWTGNVTREETNSRVIQME
FT                 ISGETSNDRFKIIDARTVKGLQLPSQSLWYQNLSRKYPHLRGLPIADYENV
FT                 TPKLLIGLDNLKLTIPLKVREGGWGQPMAAKCRLGWSIYGCSRSAKESYTC
FT                 GFHVGGWTNLEGELNQLVRDYITLDNTGVQPPLTPLVSEESKRAQQLLLST
FT                 TRRVGNRFETGLLWKWDDIQLPDSYGMALRRLHSLEKRLNKQPILYDSVRQ
FT                 QIKEYQEKGYAHQATEEELANTRPEKSWYLPLGVVLNPRKPNKVRIIWDAA
FT                 AKVNGVSLNSVLLKGPDYLTSLIEVFYHFRLYAVALTGDIKEMFHRLFIKR
FT                 EDRQFQRFLWRDNGSSNVEVFVMDVAIFGATCSPSSAQHVKNMNSKEFENE
FT                 CPRAAAAIIRFHYVDDYLDSFPTAAEAVEVGSEVRRIHAAGGFEIRNFLSN
FT                 DASVAERVGAISNEAGKTIKPEKNDNVESVLGMKWIPAEDVLTYTFLVRAD
FT                 LGHVLDPSHTPSKREVLRVVMSLFDPLGLISYYVIHGKTLMQDIWASGVNW
FT                 DEPISIELCEQWRRWTALLPELNSIRIPRCYFVAADYSSYASLQIHVFVDA
FT                 SKSAYACVVYFRVESEEGPAVSLVAGKAKVAPLKIMSIPRLELQAAVLGTR
FT                 LLNSVVAMHNLPISRGVLWTDSQTVLAWLQSDQRRYQQFVGFRVAEILSTT
FT                 DVQEWRKVDTELNVADLATKWGKGPKFEADNPWFRGPKFLLEPENLWPKQE
FT                 AVPCTTNEEVRLVGFHVEPTPPLIEVGRFSKWEKIHRSTAYVHRFINNLKR
FT                 KKLGEQLELGVLKQQELADAEITLYKQAQQESFSAEIKQLNGMEKSMQLRH
FT                 SAVPRSSNIFKLWPFQDQLGVLRMRGRIGAAPHVPFAAKFPTILPQQSLIT
FT                 FLLVDKFHRRFRNANRETIINEMRQEFYIPKMRALVAKVARNCMFCRLRKA
FT                 VPQLPPMAPLPKARLTSFVRPFTFVGLDYFGPVLVKVGRSNAKRWIALFTC
FT                 LSIRAVHMEIVHSMSTESCIQAIRRFVSRRGSPAEFFTDNGTNFHGANNQL
FT                 KREIEERNRKLASVFTNSNTRWSFNPPGTPHMGGVWERLVKSVKDAIKLTL
FT                 DESRNPDDETLETVIIEAEGMINTRPLTYIPLESADQEALTPNHFLLGSSS
FT                 GVKQLPVLPTDFRATLRSSWNLAKHLADEIWRRWITEYLPVISRRCKWFDN
FT                 VRDLKEGDLVLVVDGAIRSQWTRGQVERVVPGADGRVRQAWVRTSGGIDRR
FT                 SVAKLALLEVVTESEPNQEDGSDSRVGG"
XX
SQ   Sequence 6256 BP; 1783 A; 1375 C; 1605 G; 1493 T; 0 other;
     gttaaattaa ttattcctaa ataatttgct aaagcctact taattctacc ttaattgaat        60
     tacaagtgag tacaattaga atttgttaat tataactaag gatcatgcaa atttattatt       120
     ctagtaattg gataacgtaa cttggaagac acgatagagg aagaattttg ttgtgaagat       180
     tactgaaaat ttgtaagtcc taatgaattc atgcacatgc aaatatcatc taactaaata       240
     aacttacagc taaagtatat cccacaatca cacttgtttg gattggcctg gggttgctat       300
     aagagtttcg gtgacaacaa tttctttaga aattttcaac gcaaaatccc catctgcgag       360
     atgagtcttc ctggagaaaa gggtggatca ccttcgaatt gcgtggcgtg tgatcgcccg       420
     gacagcagcg aggacatggt ggcgtgtgat ggttgcgggt cctggtacca ctacagctgc       480
     gcggaagttg atggaagcgt cgccaacctt ccgtggacgt gtggatcgtg cgggatatta       540
     aaccaaacac cgaatccatc gaagggcatc cggaaggctg acggaaagaa aggaggtaaa       600
     cggctcacgg tccctggcgg gacagcgagg tcatcgaaag cgtccgtcgt cagcaaagga       660
     acttcgcgga agagtaagaa gaccgtagcg gatgataacg tgagttctac ttctagtgct       720
     agggcaaggc tcgcactcga gctgaagatg gtagacgaac aggaccagat tagggagcaa       780
     gaacttcagg ctgagcttga gctaaaaaat aaaaagttat tgctagagaa gcagagcagg       840
     atcgcgagtt ggctctagaa gccaggaggt tagctgagaa aagcctttca agaaagacat       900
     tagaagaaga ggagaaaatc gtaagcgcta tagaatgaga cgctgtcgct gaacgagaaa       960
     gcatcgttag gcatttctca cgcggtagtg agtttcagtg tagtgcagtg agatgactaa      1020
     ttccgaggat aaagtgcgaa gttggctgca tagatccggc gagcagacag agggaaaaat      1080
     atcatccacg tcagcagcaa aggacatcag caacattccg aaaaatctcg gagacacagt      1140
     tatcaacaaa gttcgtgtac ccaggatcac tcgaaaatcc aactacttgt ttgagcttcc      1200
     caatgaggca caggcggtag gaaacaataa ggacgtatcg tacagcctac acccagaact      1260
     gacaggcagg aatgcagccc aaggtgatag tgggttgtat gatttagccg aaaatagtcc      1320
     gactactcga cagttagcag cccgccaagt aatgggaaag gatctaccaa cgttttccgg      1380
     gaatccagag gagtggccta tctggataag caactttgaa cgctccactg tcacctgtgg      1440
     attttctttg gatgaaaacc tgattcggct ccagcgcagt ctcaaaggcc cggcaatgga      1500
     aatggtacgt tgcagactgc tttctcctgc tagcgttccc cacgtcatca agacgcttca      1560
     gatgcgatac ggtcgtccag aaacgctgat aagagcacta actgaaaaga ttcggcaact      1620
     tccccctccg aaaatggata atttgaacag tatcgtcgac ttcggtttgg cggtggacag      1680
     tctggtggaa cacttgaaga ctgcgaggca acaggcgcac ttgtcaaatc cttcattatt      1740
     gcatgaccta gttgcgaagc ttcctgtgga ataccggttg aagtggtcgt cgtacaaaag      1800
     tgacattcca gtagtaaatc ttgccacatt cggaagcttt atgtcttcgc ttgtagaatt      1860
     agctttcgaa gtcatggacg accagccaac agctgcaaaa acagttcagc aaaagccgaa      1920
     caaccgaagc tttgttcaga cacacgtgga aatcacttcg gcagattttg attcggtcca      1980
     gagcaattcg aatacgccag ccaataatcc agcaaagaaa gtctgcgttg tctgccagaa      2040
     agagggacac aaagtagcaa aatgttacac ttttcaggcg atggacattg atcatcgcct      2100
     taaggtcgtt ggtcagcata tgctctgtag aacctgcttg aaccaacacg gcaaatggcc      2160
     ttgtaagaca tggaaagggt gtgggataga aggctgccgt cttcgtcacc atacgatgct      2220
     gcatactgcc acgccagcgg ttccttttgt agtgtctact agtcattcgg agccattaag      2280
     tactggaagt ccgattttcc ggattatacc tgtaacattg cacgcgaaag aacgccgaat      2340
     gaaagtgttc gcatttgtag atgaaggctc ggaaatttcg cttcttgatg ttgcagtagc      2400
     tgagcagtta ggaatcactg ggccatctag cacgttgagc ctacagtgga caggaaatgt      2460
     tacgcgggaa gagacaaact ctcgtgtcat ccagatggag atctctggcg agacgtcgaa      2520
     tgaccgcttc aagattatag atgcacgaac ggtaaagggt cttcaattgc cgtcacaatc      2580
     gctgtggtac cagaatttgt ctagaaagta tccacacctg cgaggcttac cgatcgccga      2640
     ctacgaaaac gttacaccga aacttcttat tggtcttgac aacctgaaac tcacgattcc      2700
     attaaaagtt cgagaaggag gttggggcca accgatggca gccaaatgcc gtctaggttg      2760
     gagcatctat ggctgctcac gttcagccaa ggaatcatac acttgtgggt ttcacgttgg      2820
     aggatggacc aatttggagg gtgagttgaa ccaactcgtc cgtgattaca taacgctgga      2880
     taatactggt gtgcaacctc cgctcacacc tctagtgtcg gaggagagta aacgggctca      2940
     acagctactt ctgtccacaa cccgtagagt tgggaaccga tttgagaccg gcttattgtg      3000
     gaagtgggat gatatccagc ttcctgatag ctacgggatg gcgcttcgtc ggctacactc      3060
     tttagaaaaa cgactgaaca agcaaccaat actctacgat agtgtccggc agcaaattaa      3120
     ggagtaccaa gaaaaaggct acgctcatca ggctaccgaa gaagaactcg ccaatactcg      3180
     cccggagaaa agttggtacc tcccactagg agtggtgctg aaccctagaa agccgaacaa      3240
     ggtgcggatt atctgggatg ctgctgccaa agtgaacggg gtgtcactca attcggtact      3300
     cctaaagggt cccgattatc tcacatcgtt gatcgaagtc ttctaccact tccggcttta      3360
     tgccgtagct ctaactgggg acatcaagga gatgtttcat cgccttttca tcaagcggga      3420
     agaccgccaa ttccagagat ttctatggag ggataatgga tcatcaaatg tagaagtctt      3480
     cgtcatggac gtcgccattt tcggtgcaac gtgctcccca agctcagcgc aacacgttaa      3540
     aaacatgaac tcgaaggaat tcgagaacga atgtcccagg gcagcggcag caatcatccg      3600
     atttcattat gtcgacgact acctcgatag ttttccgaca gcagctgagg cagttgaggt      3660
     cggaagtgaa gtacgaagaa tacacgctgc cggcggattc gagatcagga attttctttc      3720
     caatgatgca tcggttgcag agagagtagg agcaatatcc aacgaagccg ggaagacaat      3780
     caaaccggag aaaaacgata acgtggaatc tgttcttggc atgaagtgga taccagctga      3840
     agatgttctc acctacacct tcctagtacg tgccgatctt ggacatgtat tggatccttc      3900
     ccacacgccg tccaaacgag aagtgttaag agtggtaatg agtttgttcg atccgctagg      3960
     gttaatcagt tactacgtaa tccacggtaa aactctaatg caggatattt gggcatccgg      4020
     agtgaactgg gacgaaccta taagtatcga attgtgcgaa caatggcgtc ggtggacagc      4080
     gcttctaccg gaacttaatt ctatccgaat tcctcgttgc tatttcgtgg cagctgacta      4140
     ctcctcgtat gcttcactac aaatccatgt tttcgttgat gccagtaaat cagcgtacgc      4200
     atgtgttgtg tactttcgag tagagtccga agaaggaccg gcggtatcat tagtagccgg      4260
     gaaagcgaaa gttgctccac tgaaaattat gtccatccca cgattggagc ttcaagctgc      4320
     agtgttgggc acaagactgc tcaatagtgt cgttgccatg cataatcttc ccatcagtcg      4380
     tggtgtattg tggacggact cgcaaacggt tctcgcttgg ttgcaatctg accagcgaag      4440
     ataccaacaa ttcgtgggtt ttcgggtggc agagatactg tctacgacgg atgtacagga      4500
     atggaggaag gtagacactg agctcaatgt ggcagatctt gcaacgaaat ggggcaaagg      4560
     accgaaattc gaagcagata atccctggtt ccgaggacca aaattcttat tggagccaga      4620
     aaatctctgg ccgaagcaag aagcagtgcc atgtaccacg aatgaagaag ttcggcttgt      4680
     aggattccat gtggaaccta ccccaccttt gatcgaagtt ggcagattca gcaagtggga      4740
     aaaaattcac cgtagcacag cgtatgttca tcgcttcatc aacaatctca agcggaagaa      4800
     acttggtgaa cagttggagt tgggagtgct gaagcaacaa gaattagccg atgctgaaat      4860
     cacattatac aagcaagcgc aacaagaatc cttttccgct gaaataaaac agctcaacgg      4920
     aatggagaaa tcaatgcaac ttcgtcattc tgcggtgcct agatccagta atatcttcaa      4980
     gctgtggccg ttccaggatc agttaggggt gctgcggatg cgaggcagga ttggtgcagc      5040
     accgcacgtt ccgtttgcag caaagtttcc cacaatttta cctcaacagt ctctcatcac      5100
     gttcctcctg gtggataaat tccaccgtcg ttttcgtaac gctaataggg aaactatcat      5160
     aaacgagatg agacaggagt tttacatccc gaagatgcga gcgttggtgg cgaaagttgc      5220
     gcgaaattgc atgttctgcc gtttacgcaa agctgtacct cagctacccc caatggcccc      5280
     actgccgaaa gctcgactaa cgtcgttcgt gcggccattt actttcgttg gcctagacta      5340
     tttcgggcct gtgttagtta aagttggacg tagtaatgct aagcgctgga ttgcactctt      5400
     tacgtgcctg agcatccggg cagttcatat ggagattgtt cacagtatgt ctacggaatc      5460
     gtgcatccaa gcaatacgtc gttttgtctc ccgtcgaggt tcacccgctg aattttttac      5520
     tgataacggg acgaacttcc atggagccaa caatcagttg aagagagaga tagaggagcg      5580
     taaccgtaaa ttagcatcgg tgttcaccaa ttccaatacc cggtggtcgt ttaatccacc      5640
     tggaacgccc cacatgggcg gggtctggga gaggctggta aagtcggtaa aagatgctat      5700
     caagttgacg ttggacgaat ctcggaatcc ggacgatgaa actctggaaa cagtaatcat      5760
     cgaagcagaa ggaatgatca atacacgacc gttaacatac attcctttag aatccgcaga      5820
     ccaagaggct ttaacgccga accatttttt gctggggagt tcatcgggtg ttaaacagtt      5880
     accagttcta ccaacagact ttcgtgctac tttgagaagc agttggaact tggcgaaaca      5940
     cctggctgat gaaatttgga gacgatggat cactgaatat ctaccagtga tttcgagacg      6000
     ctgcaagtgg ttcgacaacg tgagagattt aaaagagggt gatttagtgt tggtggtaga      6060
     tggcgcaata cgaagccaat ggaccagagg acaagtagaa cgagttgtgc caggagcaga      6120
     cggacgtgtt cgacaagcat gggtccgtac gagcggcgga atcgatcgca ggtcggtcgc      6180
     taaattagcg ctgcttgaag tagtgacgga aagtgaaccc aaccaagagg atggtagcga      6240
     ttcacgggtg gggggg                                                      6256
//
ID   BEL-178_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   AAGE02028718;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-178_AA_;
KW   BEL-178_AA-I; BEL-178_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028718; Positions    1267    1461.
XX
SQ   Sequence 195 BP; 63 A; 43 C; 41 G; 48 T; 0 other;
     tgtgacgacc aaaccctccc cgcgatggag atggcctaat gcagaaggtg ccgttttatt        60
     tctatcgggt ccactgctgt caagtgttgc gagtaggaac aatagcacgg ccggattgat       120
     ataaaatcat cataaaaaca actttgcaag tcgtacaaca acgtgatgaa atttgatctc       180
     cctaaaataa taaca                                                        195
//
ID   BEL-179_AA-I repbase;    DNA;    INV; 6665 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-179_AA_;
KW   BEL-179_AA-LTR; BEL-179_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6665
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions  528693  522029.
XX
CC   Positions [5551-6183] - Integrase core
CC   'GCATC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1258..5145,5149..6576)
FT                 /product="BEL-179_AA-I_1p"
FT                 /translation="MPPKKPTLKLLITKLVEAQSSLSDIWQFIADFKEDTK
FT                 LSQIEVRMEKLEELWEEFSETLVEIKSHDDYNEEEGYDKERREFNNRYFEA
FT                 KSFFMDQVKEKREPQALDQSFRNHDSSIHGNAALDNVRLPQIKLPTFDGND
FT                 DEWLGFRDLFTSLIHWKPDLPEVEKFHYLKGCLLGEPRSLIDPLKITKANY
FT                 QVAWDMLLKRYNNSKQLKKRQIQSLLSLPTLSKESVAELHTLLEGFERIVQ
FT                 TLDQVVQPAEYKDLLLVNILTSRLDPVTRRGWEEFSATKENDSLDDLKDFL
FT                 NRRMHVLESLPSKSTDTRGVQPTAQLKQKSSFTKTSFTSAQASGGRCFACS
FT                 GNHPLFHCNTFQRLSVSDRDGLLKTHSLCRNCFRTGHQARECQSKYSCRHC
FT                 KGRHHTLVCFKSEKGGETKVTSVTKGNAPSSNKETPGVSNPSSSQVANTVA
FT                 TNTTVSNAAYQYSSQVLLATAIVVMVDDDGNQHPARALLDSGSESNFVTER
FT                 LCQRMRVSRDKVDISVLGIGQASARVKQRIRAVVRSRVSPFSREMDFLILP
FT                 KVTVNLPTISVNIDGWAIPSGIELADPAFFESKGVDIVLGIESFFDFFETG
FT                 RRISLGKQLPTLNDSVFGWVVCGGTSTTTTSLQISCNTSTSDRLDLLLEQF
FT                 WECEEIGSEKPYSPEERRCEELYQRTVRREQDGRYTVALPRNNDILPSLGE
FT                 SRDIAFRRLQGTERRLARDASLRQQYIAFMEEYHAMGHMRKVDQTTQGMVH
FT                 RCYLPHHPVVKEASTTTKVRVVFDASCKTSSGVTLNDALLVGPVIQEDLRS
FT                 IVLRCRTRQIMLVSDVEKMFRQINVCEEDRPLQCILWRNSPIEEVDEYELN
FT                 TVTYGTKPAPFLATRTVKQLVEDEKTRYPLAARAASEDVYMDDVITGVDDV
FT                 ETALALRDQLEKMMSGGGFRLRKWASNCPKVLEGIAPEDLAIKQSAEINLG
FT                 SEPSVKTLGLTWVPKTGVLKFNFLIPALDVQKEFTKRQILSIIATLFDPLG
FT                 LLGAAITTAKIFMQQLWSIEDENGKKLDWDQPLPLTVGEDWKKLYNQLPAF
FT                 NEISIDRCVIIPGATSMEIHCFSDASEKAFGACVYLRSEDADGKVLVRLLT
FT                 SKSRVAPLKCQCIPRLELCGALLAAQLYEKVQASIKGSMKTYFWTDSTCVL
FT                 RWIHATPTTWTTYVANRVAKIQAITENGYWRHVPGVENPADLISRGIQPQE
FT                 IVNNRFWWQGPSWLEGGPEQWPNLPQNFEEEGANERRRTVVASVASPYAEF
FT                 NEEYTSKFASYNDMIRRTAYWLRLMDLLRKPRSERNGSFLSTLELREAENV
FT                 LIRRVQKEVFSREWKAIINQTAVPSNSPLRWYSPTISEDGIMKVGGRLNHS
FT                 QETEDSKHPIPLPARHAFTRMLLQHYHERLLHAGPQLMLAVVRLRFLPLGG
FT                 RSVAKQLVHNCIKCYRSKPTPIQQYMGDLPSARVTPARAFLRTGVDYFGPV
FT                 YLRPAPRRPAVKGYVALFICLCTKAVHLELVTDLSTDRFLQALHRFVALRG
FT                 KCSDIYSDNGTNFVGARNKLQEFLRLLKDQTHRNIVSKDCSTQGIQWHFNP
FT                 PSAPHFGGLWEAAVRSAKKHLLKTIGEEPVSPEDFETLLTQVEACLNSRPL
FT                 TPLTEDPEDLQPLTPAHFLVGESLQAISEPNLEDIPLNRLDKYQLMQKQLQ
FT                 HFWRRWRQEYLCQLHARTKRWKPPVQVEIGKLVVIQDDNLPPMRWRMGRIL
FT                 ELHPGDDGVVRVVTLKTASGKLTRPVEKLCMLPVPDCNDDPEPATTMSSNQ
FT                 A"
XX
SQ   Sequence 6665 BP; 1773 A; 1621 C; 1651 G; 1620 T; 0 other;
     ttgtggtcct tcgaaccgga tcaggaccag ggaaggatca acgaagctcg atttggaaac        60
     ggtcgccgct gggtcgacga tacggacgct gttcggtgcc attttgaccg ccaaggctgg       120
     cttcaatgtg gtgattgtta tcgcgaataa aaaggatcgc cgcaataaag gatcagattt       180
     ggatttctcg gatcggattt cggatactgg attcgttcac acggcttgag gcggattgtg       240
     accactattc gatgccaatt ggattgcatg gttcctagtg gaataggacg acgaccacgg       300
     ataaggttcg gttcatcacc ggaggacatt cactggacaa gcgccgaaac ttgtctcaca       360
     ggtacgtgtt aatgaacaag tatatgtcca gtcgaagcgt tcctttcacc ctacttacac       420
     ccaatttcga ccatttttct ggaaatttct gcgacggagc cacgccggac aggacgtctg       480
     gcgcagacag acacattgtt ggaatctgtg gtgccgtttt tccaaaccag gacgattcgt       540
     ggcaacggac tgccatttcg tcatcgcttg aggagtttca ctcggtggtg gttccattca       600
     ctgcccaccc atccattcat aaattcgatt ccttcccact gaagatcgcc accagtgatt       660
     tcggaacaat cactgccacc gtgttcaccg tagatcgtcg aagcccatcc acgtgtgagc       720
     gaagaggtcg cgccaacaag tttccgtcca ggtaaataca ctttatggta tatgtcgccg       780
     aagcaaggca tacagtaaat acacctgttg atcgaaattt atatcctctt cgactcatca       840
     tttacacacg caagccctgt agacccaatt gggtctgttg attccatttc gttactttgt       900
     gaaaaaaaaa atttgggaaa tttgcgaata ttgcccgctg gattggttcc actgtttggt       960
     tgtctgggta agccaccaca gtatatgtcc agccgtggca tttattttga atactacatc      1020
     atatttcccc cctcttcatt cctcttctgg tcgttggttg ctgagacgaa ctggttaccg      1080
     ttacggacgt cttattggac attttgactg gtattggcag ttcaattggg cttaatcgcc      1140
     tgtttcgtca ggttagtgaa cacgatacat agtatatgcc agtcaagcta ggcgtatacg      1200
     cggagtacta caccaccatc tctctcgttc cgttaccggt aacttgtgac gtcaaccatg      1260
     ccgccgaaga aacctacgtt gaagctactg attacaaagc tcgttgaggc gcagtcttcc      1320
     ctcagcgata tttggcagtt tatcgcggac ttcaaggagg acaccaaact ctcccagatt      1380
     gaagtaagaa tggaaaaatt ggaggaactt tgggaagaat tctccgagac gctagttgag      1440
     ataaaatctc atgacgacta taacgaggag gagggctacg acaaggaaag gcgggagttc      1500
     aacaaccgtt attttgaggc caaatccttt ttcatggatc aggttaagga gaaaagggaa      1560
     ccacaagccc ttgatcaatc tttccggaat catgattcgt cgattcacgg taatgctgcg      1620
     cttgataatg tacgtttgcc ccaaatcaag ttgccaactt tcgatgggaa cgacgacgag      1680
     tggctagggt ttcgggacct atttacctcc ctcatacact ggaaacctga cctgccggag      1740
     gtggaaaagt tccactattt gaagggctgc cttctagggg aaccacggag cctgatcgac      1800
     ccgctgaaga ttaccaaggc aaactaccag gtagcatggg atatgctgct gaaacgttat      1860
     aacaacagca agcagttgaa gaaaaggcaa attcaatcac tgctgtcgtt gcctacactc      1920
     tccaaggaat ccgtcgcgga attgcacacg cttctggaag gctttgagcg aatagtgcaa      1980
     accctcgatc aggtggtcca gcctgccgag tataaggact tgttactggt taatatccta      2040
     acgtcacgct tggatccagt gacgcgacga ggttgggaag agttttccgc aactaaagaa      2100
     aacgattctc tggatgacct caaggatttc ctcaaccgac gaatgcacgt gctggagtcg      2160
     ctaccatcca aatctaccga caccaggggt gtccaaccaa cagcgcaatt gaagcagaaa      2220
     tcatcgttta ccaaaactag tttcacttca gctcaggcgt ccgggggtcg ctgttttgct      2280
     tgttcaggaa atcatccact gttccactgc aacacattcc aacggttatc agtctcggac      2340
     agggacgggc tgctgaaaac acattcccta tgtcgcaatt gtttcaggac ggggcatcag      2400
     gcacgcgaat gccaatccaa gtactcgtgc aggcattgca agggtcgtca ccatactttg      2460
     gtctgcttca agtcagaaaa gggtggtgaa accaaggtca cgtcggttac aaagggcaac      2520
     gctccatctt ccaacaagga aacaccaggg gtttccaatc caagttcctc tcaagtggct      2580
     aacacggtag ccactaatac aacggtttca aatgcggcat accaatactc atcccaggtc      2640
     ctgctggcaa cggcgatcgt cgtgatggtg gacgacgatg gtaatcagca tcccgctcgc      2700
     gctctcttgg attccggttc cgagagcaac tttgtaacag aacggttatg ccaacgaatg      2760
     agagtgagtc gagataaggt ggacatctcg gtcctaggca tcggacaggc ttcagcaagg      2820
     gttaagcaac gaatccgagc ggtggtacgc tctcgagttt cccctttttc acgggaaatg      2880
     gacttcctaa ttttacccaa ggtgactgta aaccttccga caatttcggt caatattgac      2940
     ggatgggcaa ttccaagcgg gatcgaactg gccgatcctg cgtttttcga gtcaaaggga      3000
     gtggatatcg ttctcgggat agaatcgttt ttcgatttct tcgaaacagg caggcggatt      3060
     tcactaggca aacaacttcc gacgctcaac gactcggtat ttggatgggt cgtttgtgga      3120
     ggcacgtcga ctaccaccac ttcacttcaa ataagctgta acacatcaac ttcagacagg      3180
     ctggatttat tgttggagca attttgggaa tgtgaagaaa tcggatcgga aaaaccatat      3240
     tctccggagg aaagacgatg tgaggaactt tatcagcgga cagttcgtcg agaacaggac      3300
     ggtcggtata cagttgccct tccaaggaac aacgatattc ttcccagctt aggtgaatcg      3360
     cgagatatcg cctttcgacg actccagggg acggaacgta gattggcaag ggacgccagt      3420
     ttgcgacaac agtacatcgc atttatggag gaataccatg cgatgggtca tatgcggaaa      3480
     gtcgatcaaa ctactcaagg gatggtccat cgatgctatt tgccgcatca tcctgtggtt      3540
     aaggaggcaa gcaccaccac aaaggtacga gtagtattcg acgcctcctg taagacgtcg      3600
     tcaggtgtca cattgaacga tgctttgctg gtagggccag tgattcagga ggacttgagg      3660
     tcgattgtct tgcgatgccg tacacgtcaa atcatgctgg tttctgatgt ggaaaaaatg      3720
     ttccgccaaa tcaacgtttg cgaggaagat cgaccgctcc aatgcatcct atggaggaat      3780
     tcaccgatag aggaagtcga cgagtatgaa ctgaacaccg ttacgtacgg taccaagcca      3840
     gcacccttct tagccacacg tacggtcaaa caactggtgg aggacgagaa aacccgatat      3900
     ccgctggcag ctcgggcagc tagcgaggac gtatatatgg atgacgtcat cacaggcgtg      3960
     gacgatgtcg agactgcact agcactacga gatcagcttg aaaagatgat gtctggtgga      4020
     ggatttcggc tcagaaagtg ggcctcaaat tgtcccaagg ttttggaggg tattgcgccg      4080
     gaggatctgg ccataaaaca gtctgcggaa attaaccttg gttcggaacc gtcggtgaaa      4140
     acattaggac tgacgtgggt gccgaaaaca ggcgttctca aattcaactt cctaataccc      4200
     gctctcgacg tgcaaaagga gttcaccaaa cgtcagatct tgtccataat cgccacgtta      4260
     ttcgatccat tggggctact aggagccgct attaccactg caaagatttt tatgcagcag      4320
     ttatggtcga ttgaagacga gaatggtaaa aaactcgact gggatcagcc acttcctctc      4380
     acggtgggtg aggattggaa gaaactatac aatcaactgc ctgcattcaa cgaaatctct      4440
     attgatcgat gcgtcattat tcctggagca acttcgatgg aaatacactg cttctcggat      4500
     gcttcagaga aggctttcgg agcttgcgtc tacctgcgaa gtgaggacgc cgacggaaag      4560
     gtattggttc gtcttcttac ttcaaagtcc cgagtagcac ccttaaaatg ccagtgcatt      4620
     ccacgattgg agctgtgtgg agcattactt gcagctcagc tctatgaaaa ggttcaagca      4680
     tccatcaagg gttcgatgaa gacctatttc tggaccgatt cgacgtgcgt gctgcgttgg      4740
     attcacgcca caccaacgac gtggactact tatgtagcaa accgagtggc aaaaatacag      4800
     gcgatcaccg aaaacggata ctggcgacat gttcctggtg ttgaaaaccc cgcagaccta      4860
     atatccagag gaattcaacc gcaggagatc gtgaacaacc gattctggtg gcaaggacct      4920
     agttggttgg aaggtggacc ggaacagtgg ccaaatctgc cacaaaactt cgaagaagaa      4980
     ggtgcgaatg agagacgtcg gacagtagtt gcaagtgtag cttcaccgta tgccgagttc      5040
     aacgaagaat acaccagcaa attcgcatct tacaacgaca tgatccgccg gaccgcatac      5100
     tggctacgct taatggatct gcttcgcaag ccacggagtg aaagataaaa cggatctttc      5160
     ttgtcgacat tagaattacg agaggcagag aatgtgttga ttcgacgagt tcagaaggag      5220
     gtcttcagta gagaatggaa ggcaataata aaccaaactg cggtgccatc aaactctccg      5280
     ttgcgatggt attctcccac gatttccgag gatggaatca tgaaggttgg cggtcggttg      5340
     aatcattcac aggaaacgga agacagcaaa cacccaattc cgctcccagc acgtcatgct      5400
     ttcacacgaa tgctcctaca acattaccat gaaaggttgc tacatgctgg tccacagctc      5460
     atgctggctg tagtaagact acggtttcta cctttgggcg gaagaagtgt cgccaagcag      5520
     ctggtgcaca attgtataaa atgctatcgc tcgaaaccaa ctccaatcca acaatatatg      5580
     ggggaccttc catctgcgcg tgttacacct gcgcgagcgt ttcttcgtac aggtgtcgac      5640
     tattttggac cggtgtacct tcggccagcc ccacgacgac ccgcagtgaa gggttacgtc      5700
     gcccttttca tttgtctgtg taccaaggcg gtgcaccttg aattggtgac cgatctgtcg      5760
     actgaccggt tcctccaggc tctgcatcgc ttcgtagctc tacggggaaa gtgcagtgac      5820
     atctattctg ataatggcac aaatttcgtt ggagccagga ataaattgca agaatttctg      5880
     aggctactta aggatcaaac ccatcgaaac atcgtttcaa aggactgctc aacccaaggg      5940
     atccagtggc attttaatcc gccaagcgct cctcatttcg gtggtctctg ggaggccgct      6000
     gtccgttcgg ccaagaaaca ccttctaaaa accatcggcg aagaaccagt atcaccggaa      6060
     gatttcgaaa cgcttctcac acaggtggaa gcatgcctaa actcccgtcc cctcacacct      6120
     ttgacggagg atcctgagga tttgcagcca ttgactcccg cacatttcct tgttggcgag      6180
     tcactccaag cgatatcaga acccaacctt gaagatattc ctctcaaccg cctggacaag      6240
     taccagctca tgcagaaaca gcttcaacat ttctggcgaa ggtggcgcca ggaatattta      6300
     tgccaacttc atgcccggac caaacgctgg aaacctccag ttcaagtgga aattggcaaa      6360
     ttggtcgtta tccaagacga caatcttccc ccgatgcgat ggagaatggg acgcatactt      6420
     gaactccatc ctggtgacga cggtgtggtt cgagtcgtta cactcaaaac agcatctggc      6480
     aagctgactc gtccggtgga gaaattatgt atgttaccag taccagattg caacgacgac      6540
     ccagaacctg ctactacaat gtccagcaac caagcgtaat caccgttcca ttcccctacc      6600
     ttgtcgaaga ggatattcct gttttttctc ttttcagaaa tgtggcattt ctgggtgggt      6660
     gagga                                                                  6665
//
ID   BEL-179_AA-LTR repbase;    DNA;    INV; 723 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-179_AA_;
KW   BEL-179_AA-I; BEL-179_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-723
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions  522028  521306.
XX
SQ   Sequence 723 BP; 188 A; 178 C; 163 G; 194 T; 0 other;
     tgtttgcaac caacgattta caccctcctc agactacatc cctgacgtgt atgttaactg        60
     cgggcaaggc tatagcagga actattgtac cctgacctac ctctacctaa atgcaacaat       120
     ccatccactg gcccgattgt gacgaccgct aaacagtagc catccagtac cagcagttga       180
     gaatctgata cacagcgtga tcatcactga ctgtgctaga tctatcacca tcatcaatca       240
     tcgattggac gagcgataga cgagctccga taacggtgat aagagagtga gatcctcgct       300
     ctcggtttac cgaatctacc accggctagg gcagcatctg gattgatgat gatcgtcagt       360
     cgaattgggt cgccgtcgag aacgtacact gggcaccgag cccatacgca agttttgttt       420
     taatctgtct agccataagc gaaatataga tataagttta gatgatgttt tttgtccaaa       480
     tataaggtgt tttaattaaa gtgtttgttc taatgtaaac tcgcgtgttg aaatgtgcat       540
     gtgataaggc ctttggacta gatgatcgca agctgggttg atcgttaggc cgtaggatcg       600
     gtctcctctg gatcccctct atcccctaca atcaatcggt cgatgtcgaa cctggctccc       660
     cactgcaacc cgttactcct ctgctatcga agttctggag gattgaacag ccaggtgcgt       720
     aca                                                                     723
//
ID   BEL-17_AA-I repbase;    DNA;    INV; 6116 BP.
XX
AC   supercont1.330;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_AA_;
KW   BEL-17_AA-LTR; BEL-17_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6116
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.330; Positions  296807  302922.
XX
CC   Positions [5139-5729] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..1752
FT                 /product="BEL-17_AA-I_1p"
FT                 /translation="MPRRNRRRNHVPEDSIQQTCLLCNLPDSSEMVACDRC
FT                 AQWFHFDCAGVNEDVANQSWSCPDCSRARDPAPPLPLSSTSPEVVTGEPLP
FT                 SISLQSFHPSSHIRTTPTTRVSPVPPHRTPTPRPRTSGLQILPPPTPLPRS
FT                 PRPQIVLPPAVGAPEVPIMNQEVLAEADLVNRLPADLRIQFLEQQQAIEQR
FT                 YLLRRFQLLLESPINANYARGENEIVPINQAVGHSPVCHSSPVCRNQIPPR
FT                 PASQNRIESPFVPISQPHRSVNFPVTVSDQPSVSMIPPPQANEQANFPAFH
FT                 SNPTVHRPIASTFIPPQADSCPSAPEFSHPCGNQRGQQSAFAPLMGRMHPP
FT                 AQVFYPSAFHDEPTIVGGTALLNKSQIAARHAVPKELPLFAGEPEEWPLFF
FT                 ASFENTTHLCGFSAEENMVRLQKCLRGKALEAVKCQLLHPSNLNQVLATLK
FT                 MLFGGRPEIIVHSLLQKINNLPAPKADRLGTLVDFALAVRNMVATVKVCAL
FT                 EEHLCNLTLLHSLTERLPPMIRLNWATHRQSLHSVTLVEFSDWLYKLAEAA
FT                 STVTMPQLSGTEDNKSRRSRRMMDF"
FT   CDS           2232..6116
FT                 /product="BEL-17_AA-I_2p"
FT                 /translation="MEEGLAKQLDLNGEKYPLCLRWTADTCRYEKDATIVS
FT                 LNVSGIYDGSSQHNLKEVYTVKELKLPSQSLPVDKLTNKYNHLKGLPIVSY
FT                 SNVQPKLLIGVSNARVMHALDGREGQLDEPAAVKTRLGWTIYGTYSSADDS
FT                 IPSEVPRSFHICHHSNESDEKLHEAVKNYFALDSTGISAPKNQLLSKEDER
FT                 ALAKLREITTFQNGRYEVGLLWKYDDVRLPNNRSMALRRHNCLAKRMERDP
FT                 QLAESLRAKMIDYESKGYIRKLTSDESVKSGDRTWYLPIFPVFNPNKPGKV
FT                 RIVFDAAAEFAGVSLNSVLMKGPDQLNALPPVLYKFRERLIGLGGDVVEMF
FT                 HQMRMNPEDADSQRILWFASEDAMKPCDYVMQVVTFGATCSPSTALYVLNE
FT                 NATKYETRYPLAVDAICRRHYVDDMLTSVDTEEEAIELANEVRYIHHQGGF
FT                 HMRNWVSNSPAVVAALEEDPKSEKSMEMNAELAMEKVLGMWWSTTADVLCY
FT                 KLCTDRNRELLTGAKHPTKRDVLRTLMAIFDPLGLIAHYLMYLKVLLQEIW
FT                 RAKTEWDEKINEKHLEKWLTWLRILPELESVEIPRCYFRHESRIDNATVKL
FT                 HTFVDASENGYAAVSYFRFEKNGYIECALIGSKTRVAPIKFVSIPRLELQA
FT                 AVVGARFAKSIAEGHSIRIDRRYFWTDARDVMCWLQSDHRRYSQFVAFRVG
FT                 EILESTNVTEWNWLGTKHNVADDGTKWRFKPDLKASSRWFTGPQFLWKSKD
FT                 EWPGTSLSDEKTVTEIRQNLLIHSKCEARSILQSENYSSWKRLHRVGEILH
FT                 VSRLLFYRFIRNIRQRQHGKPVVFGPLTQEELFVAEVFLIQQAQSDEYGEE
FT                 LAVISKGDRHLNKKNRLYKLCPFIDDQGVMRIHSRLGECDFVDESERQPIV
FT                 LPRNHPTTRLIVADVHRRYHHQCRENCVNEVRTRFYIPRVRRVCDQVRRSC
FT                 QLCKILGARPAPSAMGPLPKARVAAFVRSFSYVGVDFFGPLHVLVGRRHEK
FT                 RWGVIVTCLTTRAIHLELAASLNTSSCIMALKNCFARRGTPLEIRSDRGTN
FT                 FVAAEKELKAALQELNQDRLMTEFTTPTTSWRFNPPASPHMGGCWERLIQS
FT                 VKKILAVVKPQRVPTEEVLRSYLMQVENIVNSRPLTHVPVDDHSSPALTPN
FT                 HFLVGSSDGSKPFVTYTDCPVRLQQSWKASEALANRFWQRWVAEYLPTITR
FT                 RTKWFQRVKPIAVGDVVIVVDPDLPRNYWPKGRVVSVKTSSDGQVRSAVVQ
FT                 TAAGIYNRPATKLAVLDVGANESELDQSPATGGD"
XX
SQ   Sequence 6116 BP; 1626 A; 1488 C; 1522 G; 1480 T; 0 other;
     acagtttaaa attttcgttt actggatcaa tctacgatgc ccagaaggaa ccgccgtcgt        60
     aaccatgtgc cggaggatag cattcagcaa acgtgcttgc tttgcaacct tccggatagc       120
     agtgagatgg ttgcttgtga tagatgcgcg cagtggtttc acttcgactg tgccggagtc       180
     aacgaagatg tggctaatca atcttggagc tgcccggatt gctcacgagc tagagatccg       240
     gctccaccgc tgccactgtc atcgacctcg ccagaagtag taacaggtga gccactaccg       300
     tccatatcgc ttcagtcgtt ccatccttca tcacatattc gaaccacacc cacgacaaga       360
     gtttctccag tgcctccgca tcgaacacca accccgcgcc ctcgcacatc gggattacaa       420
     attcttcctc caccaacacc tcttccgcgt agtccacgac cgcaaattgt actgcctcct       480
     gccgttgggg ctccggaagt gccaataatg aatcaagaag tgctagcaga agcagatctc       540
     gttaatagac tgccagctga cctacggatc cagtttttgg agcagcagca agctatcgag       600
     caacgatatt tgctccgtag attccaattg ttgttggagt ctccaatcaa cgcgaattac       660
     gctagagggg aaaatgagat cgtaccgata aatcaagccg tcggtcattc tccagtgtgt       720
     cattcatcac cagtgtgtcg caatcagata cctccccgtc ccgcttcaca gaacagaatt       780
     gaatcgccat tcgttccgat ctcacaacct catcgatctg ttaattttcc cgtcacagtc       840
     agcgatcaac caagtgtgtc aatgattcca ccgccacaag ctaatgagca agcaaatttt       900
     ccagcgtttc attcgaatcc aaccgtacac cgtcccatcg cttcgacgtt cattccacct       960
     caggctgata gttgtcccag tgctcctgaa ttttcgcatc cgtgtggtaa tcaacgtggg      1020
     caacaatctg cgttcgctcc gcttatgggt cgcatgcatc ctcccgctca ggtgttttat      1080
     ccttcggcct ttcacgacga acctaccata gtaggtggaa cggcgctact gaacaaaagt      1140
     cagattgccg ctcgccatgc agtgccaaaa gaactgccat tgttcgctgg tgaaccggag      1200
     gaatggcctc tgtttttcgc ctctttcgag aatacgactc acttatgtgg attttcagct      1260
     gaggagaata tggttcgtct acagaagtgt ttaagaggaa aggcattgga ggcggtgaaa      1320
     tgccaactgt tgcaccctag caacttgaat caagttctcg ccactctgaa aatgctattc      1380
     ggcggccgtc cggaaattat tgtgcactcg ctgctgcaga aaatcaacaa tctgcccgca      1440
     ccgaaagcag accgtttagg tacacttgtc gattttgcat tggccgtgcg aaatatggtg      1500
     gctacagtaa aagtttgtgc actggaggag cacttatgca acctcacgct tttgcatagt      1560
     ttgacagagc gtcttcctcc aatgattcgt ttaaactggg ctacccatcg acagtccctc      1620
     cactccgtga cactggttga gtttagtgat tggttgtaca agttggcgga agcagcaagt      1680
     acagtgacga tgcctcagtt gtccggtaca gaggacaaca aatctcgtcg tagccgaagg      1740
     atgatggatt tttgaacgca ctcgctgaag aatctccgaa atcgaagcat ttggaaacaa      1800
     ttattggttg ccttgtctgt caggatagct gtgcagctgt agataagtgt aagcgatttc      1860
     tgtcgttaga cctttccgct cgttgggacg ctctaaggga attcaagttg tgtcgtagct      1920
     gtttgggcgt gcatggagga tcgtgcaagt tcgcaaagcc gtgcggcaaa agtggatgtc      1980
     agtataaaca ccacatatta ctgcacaacg acgcaaagga taaaccagca gcaacgacgg      2040
     tcggtcccag taatcgggcc agagatcctc cacaggaaac tgctgagaag aaacgcgagt      2100
     cagagccatg caatacacat cgaggaggaa gtagagcggt attattccaa tgcattccaa      2160
     ttatccttca caacaacgga attgagctac gtacacacgc gttcttagac agtggatcgt      2220
     ctttgacgtt gatggaagaa ggtctagcca aacagttgga tctgaatgga gaaaaatatc      2280
     cactttgtct gcggtggaca gctgatacct gccggtatga aaaggatgcg actatagtct      2340
     ccctgaatgt ttctgggata tacgatggga gtagtcaaca caatctgaag gaagtctaca      2400
     ctgtgaagga gttgaagctt ccttcccagt cattaccggt tgacaagctg accaacaagt      2460
     ataatcacct taaagggctg ccgatagtat cctacagcaa cgttcagcca aagcttttga      2520
     taggtgtgag caacgcgagg gtgatgcatg ccctggatgg ccgagaggga cagttggatg      2580
     aacctgctgc tgttaagacg cgccttggat ggacgattta cggcacgtac tcgtcagcgg      2640
     acgattcaat accgagcgaa gttccacgca gcttccatat ctgccatcac tccaacgagt      2700
     cggatgagaa gctacacgag gcggtcaaaa actatttcgc actcgacagt acagggatca      2760
     gcgccccgaa gaatcagctt ctttccaaag aagacgaacg agccttagct aaattgcgcg      2820
     aaatcacaac gtttcagaat ggacgttatg aagttggtct actctggaaa tacgatgacg      2880
     tacgcctccc caacaatcga tctatggcgt tgagacgtca caattgtctg gccaaaagaa      2940
     tggaacgtga tccccagtta gccgaatcat tgagagccaa gatgatagac tacgaaagca      3000
     aaggatatat tcgtaagctc acatcagacg agagtgtgaa gtctggagat cgtacctggt      3060
     atctaccaat tttcccagtt ttcaatccca acaaaccagg aaaagttcgg attgttttcg      3120
     atgctgcagc ggaatttgcg ggagtttctt tgaattccgt attaatgaaa ggcccggatc      3180
     aactaaatgc tcttccacca gtgctataca aatttcgaga gcgactgata ggcctcggag      3240
     gggacgttgt cgagatgttt catcaaatgc ggatgaatcc tgaagacgca gacagtcaac      3300
     gtattctatg gtttgctagc gaagacgcaa tgaagccttg tgattacgta atgcaggtgg      3360
     taacgtttgg tgctacttgt tcacccagta cggcgctgta tgtcctcaac gaaaacgcaa      3420
     caaagtacga gaccagatat cctctcgccg tcgatgctat ttgccgccgc cattatgtcg      3480
     atgacatgtt gacaagcgtt gatacagaag aagaggctat tgaattggct aatgaagttc      3540
     gctatattca ccaccagggc ggatttcata tgcgaaattg ggtttcgaat tcgccagctg      3600
     tagtagcagc tcttgaagaa gatccaaagt ccgagaagtc gatggagatg aatgcagaac      3660
     ttgccatgga aaaggtcctt ggaatgtggt ggagtactac agctgacgtc ctttgctaca      3720
     aactatgtac cgaccgcaac cgagagctat taactggcgc gaaacacccc accaaacggg      3780
     atgtactccg tacgctcatg gccatctttg accccttggg actcattgca cattatctga      3840
     tgtacttgaa agtgttgttg caagagattt ggagggcaaa aaccgaatgg gacgaaaaga      3900
     tcaacgaaaa acatcttgag aagtggctga cttggttgcg catactgcct gaactggagt      3960
     ccgttgagat acctcgctgc tactttcgac acgaatcgag aatcgacaac gcaacagtaa      4020
     aacttcacac ctttgtggat gccagcgaga acggctacgc tgcagtgtcc tatttccgtt      4080
     tcgagaagaa tggttacatc gagtgcgctc tcatcgggag taaaacaaga gtagctccaa      4140
     tcaagtttgt atccattcca cgtctggagt tgcaagcagc ggttgttggt gctcgtttcg      4200
     cgaaaagtat agcagaagga cactccatca gaatcgatcg tcgttatttc tggacggacg      4260
     cacgcgatgt catgtgttgg ttacagtcag atcaccggcg ctattcacag ttcgtggctt      4320
     ttcgcgtcgg cgaaatattg gaatcaacta atgttacgga gtggaattgg cttggcacca      4380
     agcacaacgt cgccgacgat ggtactaagt ggagattcaa gccagacctc aaggcctcaa      4440
     gtcgttggtt taccggacct caatttctat ggaagtcaaa agatgaatgg cctggaacgt      4500
     cactgagcga tgaaaaaacc gtaaccgaaa ttcgtcaaaa tcttctaata cactccaaat      4560
     gcgaagctcg atccattctg caatcggaaa actactcttc ttggaaacgc ttgcatcgtg      4620
     taggtgaaat cctacacgtg tcacggcttt tgttttatcg cttcattagg aacatcagac      4680
     agaggcagca tggaaagcct gtggtcttcg gaccgctcac acaagaagag ctctttgtcg      4740
     cagaagtgtt tctgatacag caagcccagt cagacgaata cggtgaagaa ttggcagtta      4800
     tatcgaaggg cgatcgacac ctaaacaaga agaatcggtt gtacaaactt tgtcccttca      4860
     tcgatgatca aggtgtgatg cggattcaca gccgattggg tgaatgtgac ttcgttgacg      4920
     agagcgagcg ccagccaatc gtgcttcctc ggaaccatcc aactacgaga ctcattgtcg      4980
     ctgatgtgca tcggcgatat caccatcaat gccgcgaaaa ctgtgtgaac gaagtgcgta      5040
     ccagattcta cattccaaga gtgcgtagag tttgtgatca agttcggcga agttgtcagc      5100
     tatgcaagat tctcggtgct agaccagcac catcagcgat ggggcctctt ccgaaagctc      5160
     gcgtggcagc ctttgtgcgg tcattctcgt atgtgggtgt cgacttcttt ggccctcttc      5220
     acgtcctagt tggccgtcgc catgaaaagc gctggggtgt gattgtcacc tgcttaacaa      5280
     cacgagcaat acacctcgag ttagccgctt cgttgaatac aagttcgtgc atcatggcac      5340
     taaagaattg cttcgcccgc cgtggaacac cattagagat cagaagcgac cgtgggacca      5400
     atttcgtcgc tgcagagaag gaacttaagg ctgctctgca agagctaaac caagacaggt      5460
     tgatgactga gttcaccact ccgacaacat cgtggcgttt caacccccca gcatcaccgc      5520
     acatgggtgg gtgctgggaa cgtctcattc agtcagtgaa gaagatcctg gccgtcgtca      5580
     aacctcagcg ggtgcctaca gaggaagtgt tacgaagcta tttgatgcag gttgagaaca      5640
     tagtcaacag tcgtccactg acacacgttc ccgtggatga ccactcatct ccggcgctaa      5700
     ctccaaacca ttttcttgtg ggttcatcag acggatccaa gccgtttgta acgtacacag      5760
     attgtccggt gaggctacag cagtcttgga aagcatcgga ggcactggca aatcggttct      5820
     ggcaacggtg ggtggcggag tatctgccta caataactcg acgcactaaa tggtttcaac      5880
     gtgtgaagcc aatcgcagtg ggagatgtcg tcattgtggt agatccagat ctgcctcgta      5940
     actactggcc caagggacga gtagtatcgg tgaagacttc ctcagacgga caagtgcgtt      6000
     ctgcggtagt gcaaactgct gcaggaatct acaacagacc ggcgaccaag ttagctgtgc      6060
     tggacgtagg tgcaaacgaa agtgagctgg accagagccc agctactggg ggggac          6116
//
ID   BEL-17_AA-LTR repbase;    DNA;    INV; 651 BP.
XX
AC   supercont1.330;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_AA_;
KW   BEL-17_AA-I; BEL-17_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-651
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.330; Positions  296156  296806.
XX
SQ   Sequence 651 BP; 234 A; 112 C; 107 G; 198 T; 0 other;
     tgttgcgtac accctagttc tgacgccgca cctaccattg aagttcgttg atcagcatac        60
     ctgcaacagc attttacgcc gagctaagtt gctttcaatg tgcccggcat cgctatagaa       120
     ttgtcaaaag gaatttaaaa gctcacatgc ggagttcaga ttaggtgtct tatcttggtt       180
     gaagttattt cttaaaaact agtgaaatta gactacagtt agataaaact taaatactat       240
     tgtgctgaaa tcgaaacctt atactataca tggtaaaata acccattata caagttgaac       300
     ttaaaactaa agaaattatc taaatattat aggttagtta gaaaaagtgg ttggaaacta       360
     catacacaga actaaatgaa ttgattaaac tctaaggtaa atagtgacta tatacagtta       420
     gacgtcataa ctaatgattg tgcttaaaaa ctaggagttc tgttcttcac tgatttcgct       480
     gcagaataat ttatacccaa gtcttaggaa acgtacaaac gtaagttccc tgaaaactaa       540
     cccaaaccac aaaaaactta ttatgtacta tgttacagga aaattttaat tgacgagtca       600
     ataaatacct caattaaagt tttggaaagt gtttccttcg ttgcataagc a                651
//
ID   BEL-17_AnFu-I repbase;    DNA;    INV; 5913 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5913
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 669-669 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..5824
FT                 /product="BEL-17_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MERATLDNSCEEVAELQEQQATTSGAFPERRVSVVEE
FT                 PPKDGEVSPVLPRRLPSYLEVRRKRIELQKKELKLENSRKEYELERARKEL
FT                 EIELREIELEEDISDASSQVSAYVAKSEAWLRDTSRFGTTPPARYHGDNHR
FT                 NGGAGHPPSTPTATAGAWASRIAPAPLRYDGRMAEDAKGHQPLTPATTRCP
FT                 PEYDRTWAADQAAAQEREYAEWRRAVEDSIRVHRENKLGQLYKLEEKTAAN
FT                 STMESKPVLKGRVMPLTPSQEAARKAIPKELPVFSGDVEQWPLFIATYERS
FT                 TILCGFSDDENLIRLQRALRGPALESVDHLMLLPDGLAGVIEILRTEYGRP
FT                 DLIVDSLVEKIRRLPTVRNDRLETLATFGKMVRKMCATIEASGLHDYDCNV
FT                 TLLRELVAKLPAERSLEWARYKIKLSRETIKEFDKWFYEIAVAASAASKTI
FT                 ERATRPDVSRSLPFVNGVRKAPAHVNVHSTAKRTPCALCHDFCRTLADCAR
FT                 FMELSVPERRSHIQGRRLCDTCLGAHRGTCFVRTRCGTDGCRETHHRLLHN
FT                 TEQKPHRNTHSLNSHIGNDNNTLFRYVPVVLHGEKTDIKTFAFIDEGSSAT
FT                 FIDCRLIEELGIESKSNPLCLKWTDDTVRNESDSREVQLRISGAHQGAVVF
FT                 NIRKAHTLQDLTLPAQTLPIAKLVGLYPYLKGLPIASYTNVVPRVLIGINN
FT                 IHLGKPLRCVEGNFNEPIAAKTRLGWTVFGPCRIPTSSSATTYHNFHLCVC
FT                 NDKSDQNLNMALTEYFSLESIGVSAPRKLMPKEEERANTMLKTGTRLLGDR
FT                 YETCLLWKYDDVRLPCNREMALKRHMCLKRKCDKDPGLAKAISEKMREYAN
FT                 KGYIRRVPEEEIVERKERDWYLPIFPVYNPNKPGKLRMVFDAAAQVHGVSL
FT                 NTFLLAGPDQLVGLVQVLYKFRENRIAVTGDIREMFFQVRMNPADQRSQLV
FT                 FWDDGSKRNGEPSVYAVSVMTFGAACSPAGAHFVKNLNAERFADRFPRAAE
FT                 CIKFEHYVDDMLASVETVEEAVTLAEDVRYVHSQGGFEIRNWLSNAKEVVH
FT                 KLRWGANNKMCVDMSAGQGTEKVLGMWWNTESDVFTFRINPRIDEKLLTGG
FT                 RLPTRREVLSILMMIYDPLGLIGHFLMFLKILLQDLWRSGIHWDKTVEGEA
FT                 AKKWLRWTGLLPELEKLAIRRCYRNITSSDVPCVQLHVFTDASQNGMAAVA
FT                 YLRFEENNTVECALIGSKTRVAPLKLLSIPRLELQAAVIGARFADHIAKTH
FT                 RLRISKRVFWTDSRNVVSWIRSDHRRYTPFVAFRVSELLELTSVNDWRWLS
FT                 TKVNVADDGTKWQGDPGLTSSSRWFRGPEFLWEAEEKWPINKDNPGESTEE
FT                 IRKSVLHLSVIRNAVVNFSRFSRWKKLLRTVGYIHRYAGNLRRRARRADKV
FT                 VGPLTQEELLAAERSLYIWVQLDGFAGDIKRLKSDVKKKHPWKKVVKRDSV
FT                 LFKLSPEIDGEGVLRMQGRLDNRSTLGASLGKPVILPRRHPVTDLIIKDFH
FT                 ERYCHQSHGTVVSQLRSRYYIPKILVEFNRVRRGCQSCKIRNAVPNPPLMG
FT                 NIPRQRIAVNQRAFTYTGLDYFGPILVVVGRHSEKRWGALFTCLTTRAIHL
FT                 ELAYALTTASCILAIRRFIARRGPPREIISDRGTNFVGAARELNIALKDVD
FT                 EDALKTRFSGPVLKWRFNPPAAPHFGGTWERLVQSVKKILCSFNLPRLPTD
FT                 EILMSTLTEVEMMINSRPLTYVPLDEEWDCPITPNHLLLGSSDGSKQAVCL
FT                 DDSPTAIRTSWGALQVNADIFWKRWIADYLPTLTRRTKWFHPVPPIKEGDV
FT                 VVVVDGNLPRNTWPMGRVLEVTRAKDGQVRRAKVRTASGILERPATKLAVL
FT                 DIVGSS"
XX
SQ   Sequence 5913 BP; 1568 A; 1349 C; 1732 G; 1264 T; 0 other;
     tttcacaaat tagttatcac ttcacaacgt tcgttagttc gtaaacgcgt acgtaaatct        60
     aaacgcgagt agtacgtgta actagtaaaa cggtacggtc aacgatacgc gcgcgaaatt       120
     ccgcatataa atctcgccac cagggagtag tgttaattcg cgagtgaaga aaagtgttag       180
     ttgtgagatg gaaagagcaa cattggacaa tagttgcgag gaagttgcag agctgcagga       240
     gcagcaagcg acaacgtcgg gcgcattccc tgaaaggcgc gtgagcgtcg tggaagaacc       300
     accaaaggac ggggaagtgt caccggtatt gcctcggagg ttgccttcct acctggaggt       360
     aagaaggaag cgtatcgagc ttcaaaagaa ggagctcaag ctggaaaact ctcggaagga       420
     gtatgagctt gaaagggctc ggaaggagct ggagatcgag ctgcgtgaga tcgagctcga       480
     agaagatatt tccgacgcaa gcagccaggt gagtgcttac gtagcaaaat ccgaagcttg       540
     gttgcgagat acgagtcgct tcggaacgac gccaccggct cgttaccatg gcgacaatca       600
     tcgaaatggc ggtgcgggtc acccaccttc gaccccaacc gcgaccgcgg gtgcgtgggc       660
     atcacgcatt gccccagcgc cgctgcggta cgatggcagg atggcggaag acgctaaagg       720
     tcatcaaccc ttgacccctg caacaacccg atgtccaccg gagtacgatc gtacgtgggc       780
     tgcggaccaa gcagccgcac aagaacgtga gtatgctgag tggaggcgtg cggtggagga       840
     ttccataagg gtccaccgtg aaaacaagct tgggcagctt tacaagcttg aagagaagac       900
     ggctgccaat tcgacaatgg agtcgaaacc agtgttgaag ggccgcgtga tgccgttgac       960
     accaagtcaa gaagcagcgc gcaaggctat cccgaaggag cttccggtgt tttcgggaga      1020
     tgttgagcag tggccgttgt ttatcgcgac gtacgagcga tctacgatac tgtgtgggtt      1080
     tagcgacgat gaaaacctca tacggcttca acgtgcgctt cggggaccag cgttagaatc      1140
     ggtggaccat cttatgctgt taccggatgg tttggccggt gtgatcgaga ttctgcgaac      1200
     agaatatggt cggccggatc tcatagtgga tagtttagtg gagaaaatta ggaggctacc      1260
     aacggttcgt aacgatcgtt tggagacgct tgccacgttt ggcaaaatgg tgcgaaaaat      1320
     gtgtgcaacg atagaggctt ccgggttgca tgattacgac tgcaatgtga cgctactaag      1380
     ggagttggta gcgaagcttc ccgctgaacg gagcttggaa tgggctcgtt ataaaatcaa      1440
     attgtcgcgg gaaacaatta aggaattcga caaatggttt tatgagattg cggtggctgc      1500
     gagtgccgcc tcgaaaacca ttgagcgagc gacacgaccc gacgtgtccc gatcactacc      1560
     gtttgtgaat ggagtaagga aggctcccgc gcacgtaaac gttcacagca ctgcgaaaag      1620
     aacgccctgt gccttgtgcc acgacttctg ccgcacgttg gctgattgcg cacgttttat      1680
     ggaactgtcg gtgccggaga ggcgatcgca cattcagggg cgtagactat gcgatacgtg      1740
     tttaggagca cataggggca cttgtttcgt cagaacgcgc tgtgggactg acggttgccg      1800
     ggagacgcat cacagattgt tgcacaacac ggaacaaaaa ccacacagga acacgcactc      1860
     actgaactct cacattggta acgataataa cacacttttt cgatacgttc cagttgtact      1920
     gcacggcgag aaaaccgaca taaagacgtt cgcgtttata gatgagggat cctcggccac      1980
     cttcattgat tgtagactga tcgaagaatt gggcattgaa agcaagtcaa accccttatg      2040
     tttgaagtgg acggacgata ccgtgcggaa cgaatccgat tcaagagagg tccagctgcg      2100
     gatatcaggc gcgcatcagg gagcagtggt gtttaacata cgaaaggcgc acaccttgca      2160
     ggacctgacg ttaccggcgc agacgctacc gatcgcgaag ttggtggggc tttatccgta      2220
     cctaaaagga ctccccattg catcctatac taatgtggta ccgcgtgttc tgatcggcat      2280
     caacaatatt cacctgggta agccgttacg atgtgtggaa ggtaatttca acgaaccaat      2340
     cgccgccaag accagactgg gatggacagt gtttggtcca tgccgcatac cgacatcctc      2400
     gagcgccacg acataccata actttcacct atgtgtctgt aatgataaaa gtgatcagaa      2460
     cctaaacatg gcgcttacgg aatacttctc tctggagtcc atcggggtca gcgctccgcg      2520
     taaacttatg ccgaaagagg aagaacgagc gaacacaatg ttgaaaaccg gaacgcgcct      2580
     actgggagat cggtacgaga cctgtttgct gtggaagtat gacgacgtgc gtcttccatg      2640
     caaccgcgag atggcactca aacgtcacat gtgcctgaaa aggaaatgcg ataaggaccc      2700
     gggattagct aaggcaatta gcgaaaagat gcgtgagtac gcaaacaagg ggtacattcg      2760
     acgtgtaccg gaagaggaga tcgtagaaag gaaggaaagg gactggtatt taccaatttt      2820
     cccagtttac aacccgaaca agcccggaaa gctgcgtatg gtgtttgacg ctgctgcaca      2880
     ggtacacggg gtgagcctga atacgttcct actagccggt ccggaccaac tagtggggct      2940
     ggtacaggtg ttatataagt tccgggagaa tcgaatcgcc gtaacgggag atatccgcga      3000
     aatgttcttc caggtaagaa tgaaccccgc ggaccaacga agtcaactgg tgttctggga      3060
     tgatggcagc aagcggaatg gtgaacctag cgtgtacgcc gtttctgtga tgacctttgg      3120
     tgcagcttgc tcgcctgctg gggcacactt cgttaagaac ctaaatgcgg agaggttcgc      3180
     tgaccgtttt ccacgagcag cggaatgcat taaattcgag cattatgtgg acgatatgct      3240
     ggccagcgtc gaaaccgtgg aggaggcagt taccctggcg gaagacgtac gatacgtcca      3300
     ttcgcagggc gggttcgaga tccggaactg gctctctaat gccaaggagg tcgtgcataa      3360
     gctccggtgg ggagctaaca acaaaatgtg tgtggacatg agtgcaggac aaggtaccga      3420
     gaaggttctg ggtatgtggt ggaataccga gagtgatgtg tttaccttcc gtataaatcc      3480
     gcgcatcgat gagaagctgc taacgggtgg tagactcccg acaagacgcg aagtgttgag      3540
     catcctgatg atgatttacg accctctagg acttattggc catttcttaa tgttccttaa      3600
     gatactcttg caggacctgt ggagatccgg aatccattgg gacaaaaccg ttgaaggaga      3660
     agctgcaaag aaatggttaa ggtggactgg gttactaccg gaactagaga agctggcgat      3720
     aaggagatgc tatcggaaca taacatcatc agatgttcca tgcgtgcaat tgcatgtatt      3780
     taccgatgcg agtcaaaacg ggatggccgc agttgcttac ctccgtttcg aggaaaacaa      3840
     cacagtggag tgcgcgctga tcggttcaaa aacacgtgtg gccccactga agcttctgtc      3900
     gataccgcgt ctggagcttc aagcagccgt gattggagcg cgttttgcgg accacatcgc      3960
     gaaaacacat cgattgagga tcagcaagag ggttttctgg acggactctc gaaacgtcgt      4020
     gagctggata aggtcggacc acaggcgtta cactcccttt gtcgccttcc gggtgagcga      4080
     acttttggaa ctaaccagtg ttaacgattg gcgatggctc tctactaagg ttaacgtagc      4140
     ggacgacgga acgaagtggc aaggagaccc tggtctgaca tcatccagca gatggttccg      4200
     tggtccagag ttcctgtggg aagcagaaga gaaatggcct ataaacaaag ataacccagg      4260
     cgagtcaacg gaggaaatac gcaagagcgt attgcacctt tccgtaatcc gtaatgcggt      4320
     ggtcaacttc tctcggtttt cacgatggaa gaagttgttg aggacggtgg gctacattca      4380
     ccgatacgct ggcaaccttc gtcgacgagc taggcgagct gataaggttg taggaccact      4440
     gacgcaggag gaactactgg cggctgagcg gtcactatac atctgggtgc agttggatgg      4500
     gttcgctggc gatatcaaac ggctgaaaag tgacgtgaag aagaagcatc cctggaagaa      4560
     ggtggtaaaa cgagacagcg tactgttcaa gttatcacca gaaatagacg gagaaggtgt      4620
     attaaggatg cagggacgat tagacaatcg ttcaacgcta ggtgcttcgc tggggaagcc      4680
     cgttatctta cctagacgac acccggtcac ggatctgatt attaaggact tccatgagcg      4740
     atattgtcat cagagccatg gaacggtggt gagccaactc cgatcgcggt actatatacc      4800
     gaagattttg gtggagttca atcgggttag gcgcggctgc cagagctgca agattaggaa      4860
     cgctgtacct aatccacccc tgatggggaa cattccccgg cagagaattg cggtgaacca      4920
     gcgagcgttc acatacaccg ggctggatta tttcggacca atactcgtgg tcgtgggacg      4980
     acattccgag aagcgctggg gagcgctatt cacttgcctc acgacaagag ccattcacct      5040
     cgaattggca tacgcactaa cgactgcttc atgtatttta gcgatccgtc gatttatcgc      5100
     cagaagaggc cctcctaggg aaataatcag cgatcggggc actaatttcg tgggtgcggc      5160
     gagagaactc aacatcgccc tgaaggatgt ggacgaagac gctcttaaaa cgagattcag      5220
     cgggccagtg ctgaagtgga gattcaaccc gccggcagca cctcatttcg gcggcacttg      5280
     ggagcgtctt gtgcaatcgg taaagaagat actgtgcagt ttcaatttac cgcgtctacc      5340
     aacagatgag atattgatgt caacgttaac ggaggtggaa atgatgatca actcaaggcc      5400
     acttacctac gtgccgctcg acgaggaatg ggactgtcca ataacgccga accacctgct      5460
     actaggaagc tctgacggga gcaaacaagc cgtttgtttg gacgactcac cgacagcgat      5520
     acggacgtcg tggggtgccc tgcaagtgaa cgcggatata ttctggaagc ggtggattgc      5580
     agactaccta ccaacgctca cccgcaggac gaaatggttc cacccggtgc caccgattaa      5640
     agagggagac gtggtggtgg tcgtggatgg gaacctgcct cggaacactt ggccgatggg      5700
     acgtgtgcta gaagtgaccc gtgcgaagga tggccaggtt aggcgagcga aagtgcgaac      5760
     ggcaagcggg attttagaaa gaccggcaac gaaattagcg gtgctagata ttgtagggag      5820
     cagttaagtg taccgcgtgg gttttgacag atcggtagga gaaacaaacg ttagttgagt      5880
     gtaacgcccg gagcgttaca ctggtgggga gaa                                   5913
//
ID   BEL-17_AnFu-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-320
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 721-721 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 320 BP; 90 A; 69 C; 78 G; 83 T; 0 other;
     tgttgcgaag cgtatatcgc aactcgtttg tttacgttgt agtatagcag cagggcctta        60
     caacagcgat atcgttgtag ggtttcgcga tgggggcgat ggtgggacag tgcccaccat       120
     cattatagca gcagttagga tggcgacgaa ggaaaacccg ataaataggg ccgaaggacg       180
     cgccttcggc ctcttttaag cgcgacagta gagaacgaaa ctaatttgtg atcttccctt       240
     ttctaactat accgacaata aatagctaga aaacagacct acattttatg atctctctgt       300
     ggctgtaatc attcacaaca                                                   320
//
ID   BEL-17_CQ-I repbase;    DNA;    INV; 5696 BP.
XX
AC   AAWU01036025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_CQ_;
KW   BEL-17_CQ-LTR; BEL-17_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5696
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 187-187 (2011).
XX
DR   Genome; AAWU01036025; Positions   17296   22991.
XX
CC   Positions [4612-5202] - Integrase core
CC   'AAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..2110
FT                 /product="BEL-17_CQ-I_2p"
FT                 /translation="MTPKKRYVRSNSVKLKELKRRMATILGSAEQIKVFEA
FT                 NYTADQANQLVIRIEMLDELWKQYSEVQEEIELLEDLSGEEISEERLVFQN
FT                 KYVELKALLVSKLPNLSVNTEPTRVASNSASIVSQSVRLPEIQIPKFDGNP
FT                 ELWIEFRDTFKSLIHANPNLTAIQKLHYLKDALIGEAYSSVANLEMSTEGY
FT                 NIGWKLVEKRHNDTNFLIKRHISALFAIAPIKKESSALLMDLADQFDRHVS
FT                 ILNKLEKTEEHWNSVLVEALSRRLDTTTLKEWEKDCKEGERPDFDALVTFI
FT                 RKQARTLQSVKMSHTPTATQETKIVVKSRSTNNFMIAEAAHKCPMCKAAHY
FT                 LYECDQFNKLSPRHCFNIAKKYKLCINCLRGHHLAKNCNSSNCKSCGQRHH
FT                 TLLHLPPAVDGNSYNSNQRTTFTAFGQQVENLQVQTQMYCPPHLMGGVSGA
FT                 RHPNTIDSFVPGTIETPFAHVAQSNQTPSHTNYSAYSAILSEGKPAQNHYN
FT                 EQHKIRSANRAAEDSSGVLDTSRAKTEVFLATAIVRVEDRDGTNHFARVVL
FT                 DSCSQCNFISEAVATKLRLRRTKTNTEVAGIGPGKVRVTESVTVKLRSRTR
FT                 AFETSVVCLIIAKIPAILPSQNIDIRDWQVPRDVKLADPNSTLVRVWTFYS
FT                 GPNSSSRYCLARVTK"
FT   CDS           2167..5613
FT                 /product="BEL-17_CQ-I_1p"
FT                 /translation="MYAGRGANPSLCIISSLSGLDAILERFWQVDDFDRGR
FT                 ALSLDDRWCEDHFNRTVSRRDDGRYVVRLPIREDRRPFLGDSYNLAQRRFL
FT                 ANERRFGYDQQLRDDYLRFMDEYAELGHLEPGLRTGKEEFNLPHHAIRRPD
FT                 STTTKTRVVFDASVKGCNQLSLNEILHSGPTVQPTLLSTVLNFRLPKYVFI
FT                 ADIEKMFRQIWIHPEDRKLLKIVWRTNTQSPLETYQLKTVTYGTACAPFQA
FT                 ARVLNKLADDEGHRYPLGAHILKNHTYVDDTLAGRDSLNEAIEATVQLRQL
FT                 LQSGGFNLRKWCSNDRRVLQQIPTDLVEMPHEIEIDRSNTIKTLGLFWNPH
FT                 EDSFGFKIPKLSALDKITKRIVASEMAQLFDPCGLIGSVVVWAKMFVQGLW
FT                 YEKFAWDQELPEGLAKSWHTFRDQLPYLLEFRVPRRVVVSRKFMLHCFCDA
FT                 SERGYGCSVYVVSKDQHKSYSNLLSTKSRVAPLREHDITRLELCAFLLGCQ
FT                 LIDTILTTTEFVAPVVFWTDSSVVLQWIQTPPAIWKVFVSNRIAEIQRLMK
FT                 GHTLRHVPTHLNPADRLSRGILPIEILNDKLHVHGPDFICESIESWPATKF
FT                 DKSVLSVVESERRPIVALFTALVQSEPEEIFTKFSELAKLLKVTVYCLRFC
FT                 TILRERSKGQSLGKIQPREIDNALKTLIRLAQSYSFPHELKLLEKCKAEDC
FT                 TQTELNFKSLIKGLDLFLDEFGLIRIKGRLEKLSAPFDTRCPILLHDDHPL
FT                 TKLIARSIHLQTLHGGPTLMLATLRQRFWPLHGRKLVRNIAYQCVQCFRCN
FT                 PRKRVQIMAPLPTVRITPARVFANCGLDYCGPFLVRPLIGRGAALKMYVAC
FT                 FICMVSKAIHLELVPDLSSQACINAIKRLIARRGRLLTLHCDNATTFKGAD
FT                 RELKELRNQYIAQFQTEMWNNFCLAQGITFHHIPPRSPHFGGLWEAGVKSF
FT                 KHHFKRILGNKSLRLDEVTTCVTQIEGILNSRPLTPLTNDADDLSALTPGH
FT                 LIIGEPLFSLPEPNVSELSINRLNRFQEMRRTVQDFWKRWTRDYVHHLHQR
FT                 PKWHQGTRNPQVGELVLLKQENLPPLQWNIGRITATHPGRDGRCRVVDVRT
FT                 TRGTYRRAAAEVCLLPIETESSKVENPAQHQMQLPTSQPEL"
XX
SQ   Sequence 5696 BP; 1687 A; 1251 C; 1307 G; 1451 T; 0 other;
     tttggtgccg aaacccggga taatcgctgt cgccggataa atctccaacg tcgtcgagtc        60
     atcgccagca cgaagccgct tataagttaa gtatattagt taagtgagtg aagtgaagat       120
     gactccaaag aagagatatg tgcggagcaa ttccgtcaag ttaaaagaat tgaagaggcg       180
     gatggccacg atactaggtt cagcggaaca aatcaaagta ttcgaggcca attacacggc       240
     cgaccaagca aatcaactag taattagaat cgaaatgctt gatgagcttt ggaagcagta       300
     ctcggaggta caagaagaaa tagagcttct agaggacctt tcgggtgaag aaatttctga       360
     agaacgatta gtatttcaaa acaaatacgt tgaattaaaa gcactacttg ttagtaagtt       420
     accgaatcta tcggtaaata cggagcccac tcgcgtggct tcaaattcgg cgagcatcgt       480
     gtcgcaatcg gtacgtctgc ccgagatcca aattcccaag ttcgacggga atccggaatt       540
     gtggatcgaa tttcgtgaca catttaaatc actcattcat gcaaacccaa atctaacagc       600
     tatccaaaag ttgcactatt taaaagatgc actaattggt gaggcttatt cgtccgtagc       660
     caatcttgag atgtcgacgg aaggttataa tatcgggtgg aaattagttg aaaagcgaca       720
     caacgatact aactttttga tcaaaagaca catttctgct ttatttgcga tagcaccaat       780
     taaaaaagag tcttctgctc tgttgatgga cctcgctgat caattcgatc gtcacgtcag       840
     catacttaat aagctagaaa aaacagaaga acattggaac tctgtactag ttgaagcttt       900
     gagcagacgt ttagatacta ctacattgaa ggagtgggaa aaagattgca aagaaggcga       960
     acgtcctgat ttcgacgctt tagtcacatt tattcgcaaa caagcgcgta cgttacagtc      1020
     agtaaaaatg tctcacacac cgacagctac acaagagacc aagatcgtag taaaatcaag      1080
     gtccacaaac aactttatga tcgctgaggc agcgcacaaa tgtccgatgt gcaaagcagc      1140
     tcattatttg tatgagtgcg atcagtttaa caaactttca ccaagacatt gctttaatat      1200
     cgccaaaaag tacaaactgt gtatcaactg tttacgtgga catcacctcg ccaagaactg      1260
     caactcctct aactgcaaat cttgtggaca aaggcaccac accctattgc atctaccgcc      1320
     agctgtcgat ggtaatagtt acaacagcaa tcagcgaact acatttacag cgtttgggca      1380
     acaggtagaa aatctacaag tacaaacaca aatgtattgt cctcctcatt tgatgggggg      1440
     agtgtcgggg gctcgacacc ccaatactat tgattctttt gtccctggga caatagaaac      1500
     cccttttgca catgtagctc agtccaatca aaccccaagc cacacaaact actcggctta      1560
     ttcggcaatt ctcagcgaag ggaaacctgc acagaaccac tacaacgaac agcacaagat      1620
     tagatcagct aaccgtgcag cagaagactc atcgggagtt ctggacacgt cgcgggcaaa      1680
     gacagaggtc ttcctcgcaa ccgcaatcgt gcgggtagaa gatcgtgacg ggacgaatca      1740
     cttcgcgcgc gtggtgttag atagttgttc tcagtgcaat tttatatcgg aagcggtcgc      1800
     caccaagtta cgattacggc ggaccaagac aaatacggaa gtcgcgggaa tcggtccggg      1860
     taaagtgcgt gttacggaat cggtcactgt gaagcttcgc tcgcggactc gcgctttcga      1920
     aacgtcggtc gtttgcctca ttattgccaa aattccggca attttaccga gccagaatat      1980
     cgatattcgc gactggcagg ttccgcgtga cgtgaaattg gctgatccga attcaacatt      2040
     agtgcgggtg tggacatttt actcggggcc gaactcttct tctcgttatt gcttagccag      2100
     agtaactaaa taaatgtgtg atatccactc ttacaggaag cactgtttgg acatatcgtg      2160
     tcagggatgt acgcggggcg tggagcaaac ccatcgctgt gcataatcag cagtctcagc      2220
     gggctggatg ccatcctaga gcgattctgg caagtggacg actttgaccg cggtcgagcg      2280
     ctgtcgctag acgataggtg gtgtgaggat cactttaatc gcacggtttc gcgtcgggat      2340
     gacgggcgtt acgtggtacg gttaccaatc cgcgaagatc gaagaccttt tctcggtgac      2400
     tcgtataatc tagcccagcg tcggttcctg gctaacgagc gcagatttgg atacgaccag      2460
     cagcttcgcg acgactacct gcgatttatg gacgaatatg ctgaactcgg acacttggaa      2520
     ccgggcttac gcacaggtaa agaagaattt aatttgcctc atcacgccat tcggcgaccg      2580
     gatagtacaa ctactaaaac tcgcgtcgtt tttgatgcat ccgttaaagg ttgcaatcaa      2640
     ctatcattga atgaaatact gcactcgggc ccgacagttc agcctacact attgtcgact      2700
     gttttgaatt ttagattgcc aaaatatgtt tttattgccg acattgaaaa aatgttcagg      2760
     caaatttgga ttcatccaga agatcgaaaa ttgctaaaaa ttgtttggcg tacaaatacg      2820
     caatcacctt tggaaactta tcagttaaaa acggtcacgt atggaactgc ctgcgctcct      2880
     ttccaggctg ctagagttct aaataagtta gctgatgatg aagggcatcg ctatccctta      2940
     ggagctcata ttttgaaaaa tcacacatac gtggacgaca ctctagcagg aagagacagt      3000
     ctgaatgaag caatcgaagc aactgtgcaa cttcggcaac tgttacagtc tggcggattt      3060
     aatttgagaa aatggtgttc aaacgatcgc cgagttctgc aacaaatacc aacagacctg      3120
     gtggagatgc cccacgagat cgaaatcgat cgctccaata caattaaaac gcttggattg      3180
     ttttggaatc cacacgaaga tagcttcgga tttaaaattc ccaagttgtc tgcgttggac      3240
     aaaatcacca aacgcatcgt tgcctcagag atggcccagc tatttgaccc ttgcggtcta      3300
     attgggtcag tagtcgtgtg ggcaaaaatg tttgttcaag ggttgtggta tgaaaagttc      3360
     gcatgggatc aggaacttcc cgaagggctt gccaaatctt ggcacacatt cagagatcag      3420
     ttgccatatc ttttggaatt ccgagtacca cggagagtgg tggtatcgag aaagtttatg      3480
     ttgcattgtt tttgcgatgc ttccgaaaga ggctacggat gctctgtcta tgtggtgtca      3540
     aaagaccaac ataagtcgta tagcaattta ctcagcacga agtctcgagt cgcaccatta      3600
     cgagaacacg acattacccg ccttgagctg tgtgcgtttt tgttaggttg ccagttaata      3660
     gatacgatat taaccaccac agagtttgta gctccagttg tgttctggac cgattcgtcg      3720
     gtggtattac aatggataca aacaccacca gcaatctgga aggtatttgt gtcaaatagg      3780
     attgcggaaa tacaaagact catgaaagga cacactttac gacacgtccc aacacatcta      3840
     aatcctgctg atagactgtc aaggggaatt cttccaatcg aaatattaaa cgacaaatta      3900
     cacgtacacg gaccggattt tatttgtgaa tcaatcgaat cctggcccgc aaccaagttt      3960
     gacaaatcag tattgagcgt tgtcgaatcg gaacgcagac caatagttgc tctttttacg      4020
     gcgctagttc aaagcgagcc cgaagaaatc tttacaaaat tctctgaatt ggcaaaacta      4080
     ttaaaagtga cagtttactg tttaagattt tgcaccattc ttcgagaacg gtctaaggga      4140
     caaagtctgg gaaaaataca accgagagaa attgataacg ctctcaagac tttaattcgc      4200
     ttagcgcaat cttattcttt tccacacgaa ttgaagttgc tggaaaaatg taaggcagaa      4260
     gactgtacgc aaaccgaact caactttaaa tcgctaataa agggtttgga tctattccta      4320
     gatgaatttg gattaattag aattaagggt agattagaaa aactgtctgc tccatttgac      4380
     acacggtgtc cgattttgtt gcatgatgat caccccttga ctaaattaat cgctcgctct      4440
     attcatctcc aaaccttgca tggtgggcca actttaatgc tagctacttt gcgccagaga      4500
     ttttggcctt tacacggaag aaagctggtg cgaaatattg cgtaccaatg tgtgcaatgt      4560
     tttcgatgta accctagaaa aagggtgcaa attatggccc cattacctac agtaagaatt      4620
     acaccagctc gcgtcttcgc gaactgtgga ttagattatt gcggtccctt tttagttcgg      4680
     cccttgatcg gaagaggcgc tgcattaaaa atgtatgttg catgtttcat ttgcatggta      4740
     tcaaaggcga ttcatttgga gttggtacca gatttatcat cacaggcctg cataaatgca      4800
     atcaagagat tgattgcgcg cagaggacgt ttgctcacac tgcactgtga taatgcaacc      4860
     acatttaaag gagcagatcg tgaacttaaa gaacttcgaa atcaatatat tgctcagttt      4920
     caaactgaga tgtggaacaa tttctgtttg gctcaaggaa ttacattcca tcacattcct      4980
     ccacgctctc ctcattttgg aggattatgg gaggctggtg taaaatcctt taagcaccat      5040
     tttaagcgaa ttttaggaaa taagtcgttg cgcctcgacg aagttaccac atgtgtgact      5100
     caaatagagg gtattttaaa ttctcggccg ttaacgccgc ttacaaatga tgctgatgat      5160
     ttaagcgcat tgactcctgg acacctgatt attggagaac cgctattctc cctcccagaa      5220
     ccaaacgtgt cagagttgag tatcaaccga ttgaatcgat tccaggaaat gcggcgtacc      5280
     gtccaagatt tttggaaacg atggactcgg gattacgttc atcatttgca tcaacgtcca      5340
     aaatggcacc aaggaactcg aaaccctcag gtcggcgagt tagttttgtt gaaacaagag      5400
     aaccttccgc cgttgcaatg gaacatcgga cgaataaccg ccacacatcc gggcagagac      5460
     ggcaggtgca gggtggtcga cgtccgcacc acaaggggaa cttaccggcg tgccgcagca      5520
     gaagtatgcc tgctgccaat cgaaaccgag agcagcaaag tagaaaaccc agcccagcac      5580
     cagatgcagc tcccgacaag ccagcccgaa ctgtaaaatt gtcagaagct cggttcaagg      5640
     agactgatga agcagaaagt gagtaaagga gttgacccag tcaactaggg gcagga          5696
//
ID   BEL-17_CQ-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   AAWU01036025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_CQ_;
KW   BEL-17_CQ-I; BEL-17_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 188-188 (2011).
XX
DR   Genome; AAWU01036025; Positions   17061   17295.
XX
SQ   Sequence 235 BP; 73 A; 45 C; 52 G; 65 T; 0 other;
     tgtttgtagt aacacgaatt gctgttgaat aacaataatt gtttttgatt aggaatgcaa        60
     atcatctcgg cgcagcccta ccacaatgaa tttggtagcg gtgggctgcg tttaggtgtt       120
     tccgccgtag gttaggacaa ttacgatagg tatgatcggg gaataagtac aaaaataaaa       180
     tcacttggaa ttcgaccgca cacaggacta catctcttca aaatccatcc gaaca            235
//
ID   BEL-17_DAn-I repbase;    DNA;    INV; 5474 BP.
XX
AC   AAPP01019850;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DAn_;
KW   BEL-17_DAn-LTR; BEL-17_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5474
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019850; Positions   49395   54868.
XX
CC   Positions [4543-5076] - Integrase core
CC   'ATTCCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..1786
FT                 /product="BEL-17_DAn-I_2p"
FT                 /translation="MPTEQDTTVCNICKKSRLNSGVQNWVQCDICKLWFHF
FT                 ACAGVDANIRERPWKCTFCKEEEDDVISTCSDYPVPPHPQEVQSINSAKSA
FT                 QEQLDAYQPQIQPNKQQAFKLTEPTSAPSNSNLMLAMLEETREAERKYIHQ
FT                 KYTFLSQQQGVNTIPFAEIGPTTAQLAARQVLPADLPPFSGNPEEWPMFIS
FT                 MYENNCAVAGFSNAENMLRLQKCLKGKAYELVRDKLLIPTLVPEVISTLKT
FT                 FFGRPEQILDRLIDRIREINVYKDKLETLIDFAMAVRNACATMEACRLHRH
FT                 MDNPMLLRELVGKLPTHHKLSWAMHQRCDSIPIIQSFSDWLYKLAEAASTV
FT                 LPGSSAKTNSVNTHSQTRRGSSNEATFDTEVDLQEETRASQTCIMCNSTEH
FT                 TAAQCEKFKLLTVPERQRIINDSRACYRCLKAHRRKCFSRRDCGVDNCQSK
FT                 HHPLLHRDPPQSELVSAHHEEGIMEEQYFRILPVTLCGKGTSINTFAFLDE
FT                 GSSVTKAYS"
FT   CDS           3604..5349
FT                 /product="BEL-17_DAn-I_1p"
FT                 /translation="MQGCTAETRLHSTYGTPGSRYGSRTSKKKIKNTRGLR
FT                 IDKCTYWSDSKTVLQWLKIDPRNFQPFVMHRVGEIIDNTTINQWRCVPTKE
FT                 NIADLATKIVKAPEASRWINGPHFLIQPEGEWPEPDVSFNEETIYYFSDWK
FT                 RLYRAVANFLLYIEKLRAKCCGKPLPKRLNPDIVRSAMTWLYKQAQFELYA
FT                 AEITSLKSRSCINKASPLIALNVYLDASGVIRVQGRMNKLNPAGDAIVLPK
FT                 KSRITFLIAKDYHERSHHMLHETTINLIRTDFYIPRLRVLFKEVRMSCQKC
FT                 KIITALPKHPQMAPLPAARLASFERPFTYTGMDYFGPILVNVRRHKEKRWG
FT                 VLFTCLTLRAVHLEVAHKLDVSSCIMCLKNFMALRGVPKEIYSDNGTNFKA
FT                 TEKVVKEELKRINFDNITILYDAIIWKFNPPAAPHMGGAWERLVRSVKSVL
FT                 KSIYPINNFNDETLRTALMEAETILNSRPLTFVSLDSEDEEALTTNHLLLG
FT                 SPSGYKPMLEDNTDLRLRWHQTQLFADKFWKRWIREYTPTLTRRCKWFTKR
FT                 PPLAIGDIVVVVDDQLPRNSWPKGRITDVVIAKDG"
XX
SQ   Sequence 5474 BP; 1778 A; 1304 C; 1143 G; 1249 T; 0 other;
     tttctttaaa aaactttact tcaacaaacg ccaaataagc gaaagccaac agacgcctga        60
     atttcatcag aaattgtgaa atacccgaag acatctgcac agacgcccac acatgcacat       120
     acatacatgt aaaaaaggca atctgaacgc aacctcgtgt agtacatcac aaaaagtgaa       180
     caggtcctaa caggcaaacg caaaaacagc accataatag aatcatcaac atcaaataca       240
     caattataca taaatatctt gacattccaa aatgcctacg gagcaagata caacggtgtg       300
     taacatatgc aaaaaaagtc ggctaaatag cggtgtccaa aactgggtcc aatgcgacat       360
     atgcaagcta tggtttcact ttgcctgcgc tggagtcgat gccaacataa gagagcgtcc       420
     gtggaaatgc acattctgta aggaagagga agacgacgta atttcaactt gcagcgatta       480
     tccagtacca ccgcatccac aggaagttca atccattaat agcgctaagt ctgcccagga       540
     acagctggat gcctatcaac cacaaattca acccaacaag caacaagcct tcaagttaac       600
     tgagccgaca agcgccccga gcaacagtaa tctaatgctg gcaatgcttg aagagacgcg       660
     tgaagctgaa agaaagtaca ttcatcaaaa gtataccttt ctttcccagc aacagggagt       720
     aaacacaatc cccttcgcag agattggacc aactactgca caactagccg caagacaagt       780
     cttgccagcg gatcttcccc catttagcgg taatccagag gaatggccca tgttcataag       840
     tatgtacgaa aacaattgcg ctgtagcagg cttttcaaac gcagaaaaca tgctgcggct       900
     tcaaaaatgc ttgaagggaa aagcgtacga gttggtccgt gataagctgc tgataccaac       960
     actggttcca gaagtcatca gtacgctgaa aacatttttt ggacgacctg agcaaatcct      1020
     cgatcgactg atagacagga tccgtgaaat caacgtgtac aaagataagc tggagacact      1080
     aatagacttc gccatggcag tccgcaacgc ctgcgccaca atggaagctt gccggttaca      1140
     tagacacatg gacaatccaa tgctgctacg ggaactcgtt ggcaagttac ctactcatca      1200
     caaattaagc tgggctatgc accaacgctg cgattcgatt cccataatac aatctttcag      1260
     cgactggcta tataaactag cggaagcagc ctctaccgta ctacccggat caagcgcaaa      1320
     gaccaacagt gtaaacaccc attcacaaac tcgacgagga tcgtcgaacg aagcaacttt      1380
     cgatacggag gtcgatctcc aggaagaaac cagagcgagc caaacgtgca ttatgtgtaa      1440
     ttctactgaa cacaccgccg ctcaatgcga aaaatttaag ctgctaactg ttccagaaag      1500
     acaaagaatt ataaacgact ctcgggcttg ctacagatgt ttgaaggccc atcgccgaaa      1560
     atgtttttcc aggcgcgact gcggagtcga caactgccaa tccaagcatc acccgttact      1620
     tcatagagat ccacctcaat cagagctagt tagtgctcat catgaagaag gcattatgga      1680
     agaacaatac ttccgaattc tgccagtcac tctgtgtgga aaaggaactt ccattaatac      1740
     atttgccttt ctggacgaag gttcatcagt aacgaaagcg tactcctgaa ggatctaaaa      1800
     attgccacaa caaatgaacc gctatgccta cagtggaccg gcggcaccac cagaatggag      1860
     gatacttcag agagagcgca acttcaaata tcagagactg gaaattcgaa aaagatgtgg      1920
     cttaacaaag tgcactctgt taaaaagctg ttattaccaa agcagaccgt tgatgcagac      1980
     aaactatgca aaaggtataa atatttacat ggattgcctc tgaaatcata ttataacgca      2040
     gagcctatga ttcttatcgg tactaacaac tgggcattag cagttcccag aaaaatccgt      2100
     gaaggaagac gcaacgaacc catcgcctca aaatgtgctc taggatggag catccaagga      2160
     acaggaaact caagcaaaca tgtttctcta catcactgcg aatgcaactg gggcgaactc      2220
     gacaaagcca tcaaggatag ttttaatgta gaccctatag ctccacgaaa gcttcaatcg      2280
     gaagatgaca aaaaggccat acgcattctt gaagacacat gcaaaaaggt aaatggccgc      2340
     taccaggttg gtcttctttg gcgagatgac cgtgctacgc tcccagaaag cctttcaact      2400
     gctttaagac gcctggaatg cctgcggtca aaaatcaaga gagatccaga atttcgagcg      2460
     agttcaagac caaatcaaca atcttgtgtc taaaggatat gcaatcgaac tagaacctac      2520
     agacataaat aaggaagaac atcgggtatg gtatctccca attttcatcg ccttaaatcc      2580
     taataaacct aataaagtac gattggtttg ggacgcagct gcgaaaagtc acgggaaatc      2640
     tcttaacgat tttattttaa atggacccga ttatctaaat ccattcgcag aggttcttat      2700
     ggcatttaga gttggtcgta tcgccgtgtg cgccgacatt gcagagatgt tccatcaaat      2760
     taccatacaa gaaagcgata tgcaagttca aaggttctta tggttccata acgacaaaaa      2820
     aactccaaga accttcgtca tgcgttcgat gacattcgga atttgctgcg caccttgtat      2880
     cgcccattat gtacgcgaca aaaacgcaga ggcattcaaa gacacaaatc ctcgagcata      2940
     cgagtctata accaaggcac actatatgga cgatctcatc gacacctaca ataatgattc      3000
     cgaggcggta tcagtggcat cagcagtcaa ggatattcat gcgaatgcag aattcacaat      3060
     aagaaactgg atctcaaact ccgccgcggt tatgcatcat tttggagagc gccaattaaa      3120
     cacccacaat ccaagggaac ttggtggacc tgaaaaggtt ctcggtatgt attgggatcc      3180
     aaaacacgac gtttttaagt atatatttag gttcgcaaga cttcaaagag atgtcctgaa      3240
     cggagacgct acaccaacca agcgagaaat cctgtaggta ctcatgtccg tctttgatcc      3300
     actgggctta atctcttgct acacaatcgg cctaaagatg ctacttcaaa aagtgtggcg      3360
     gtcaggcaga gactgggatg aggaacttcc cgaagagcta cttcagtttt ggatgcaatg      3420
     gaaaatcgtc cttctacaag ctactaagtt ggaatttccc cgtcactact ccagattgct      3480
     accagaagca gagcaaatcg atctacatac cttcgtagac gccagcgaat acgcttatgc      3540
     cgcagtttca tatcttcgta taaaaaagga aaacaatgtc gatacagtca tagtagccgc      3600
     aaaatgcaag gttgcaccgc tgaaacccgt ctccattcca cgtatggaac tcctggcagc      3660
     cgttatggga gtcggactag caaaaaaaaa atcaaaaaca cgcgaggttt acgaatcgat      3720
     aagtgcactt actggtcaga ttctaagact gttcttcagt ggctaaaaat cgacccacgc      3780
     aacttccaac ccttcgtcat gcaccgagtt ggcgagatca ttgataatac taccattaat      3840
     cagtggcgct gcgttccaac aaaagaaaac atagcagatt tagccacaaa aatcgtgaag      3900
     gctccagagg cttctcgatg gattaacggg ccccactttc ttatccagcc ggagggtgaa      3960
     tggccagaac cggacgtgtc cttcaatgaa gaaacaattt actatttttc ggactggaaa      4020
     cgcttataca gggctgtggc taatttcctc ctatatatcg agaagctacg tgccaaatgc      4080
     tgtggcaaac ctttgcctaa acgtctaaac cctgacatcg ttcgttcagc catgacatgg      4140
     ctatataaac aggcgcagtt tgaattgtat gctgccgaga tcacctcttt aaaatccaga      4200
     tcatgcatca ataaagccag cccgcttatc gccctaaacg tctatttgga tgcatcaggt      4260
     gtcatacgtg tgcaaggcag aatgaacaaa ttgaatccag caggtgacgc catcgtactg      4320
     cccaaaaaat cacggattac cttcttaatc gccaaggatt atcacgaaag atctcatcac      4380
     atgctccatg agacaacaat aaatttgata cgtaccgact tctacattcc acgtctgcga      4440
     gttcttttta aggaagtccg aatgagttgc caaaaatgca aaatcattac cgccttacct      4500
     aaacacccac aaatggcccc tctaccagct gccagactcg cttcctttga gagacccttt      4560
     acgtataccg gaatggacta cttcggcccg atccttgtca acgttagaag gcacaaggaa      4620
     aagcgttggg gagttctgtt cacgtgctta actttgagag ccgtgcactt agaagtagcc      4680
     cacaaactcg acgttagttc ctgcataatg tgtttaaaaa acttcatggc acttcgagga      4740
     gtaccgaaag aaatctactc agataacggc actaatttta aagccacaga aaaggtagtg      4800
     aaggaggaac taaaaaggat taacttcgac aatataacca tactctatga cgcaattata      4860
     tggaaattta accctccggc agcgcctcat atgggaggag cgtgggaaag gcttgttcga      4920
     tctgttaaat cagtcctaaa atcgatctac ccaataaata actttaacga cgaaacttta      4980
     cgaactgcct taatggaagc tgaaactatc ttaaattcca gaccattaac ctttgtttct      5040
     ctagattccg aagacgaaga ggctttaacc acaaaccatc tactcctggg atcaccgagc      5100
     ggttacaagc caatgttaga agacaacact gacctgaggc tacgatggca ccaaacgcag      5160
     cttttcgccg ataaattttg gaagcgttgg ataagggaat acacgcctac actaaccaga      5220
     cgatgcaagt ggtttaccaa acgcccaccg ttagccattg gagacatcgt agttgtcgtc      5280
     gacgatcaac ttcccagaaa ctcgtggccc aaaggacgca taactgacgt agtgattgcc      5340
     aaggatggat aagtacgcag ggcaacagta tggacgcgga atggaattat gatccgccca      5400
     gtagccaaaa tagcagtcct ggacgtcggc ttaaaagaaa gtgaagatcc gaaggacgtt      5460
     cacggggggg agaa                                                        5474
//
ID   BEL-17_DAn-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   AAPP01019850;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DAn_;
KW   BEL-17_DAn-LTR; BEL-17_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-266
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019850; Positions   49129   49394.
XX
SQ   Sequence 266 BP; 87 A; 49 C; 47 G; 83 T; 0 other;
     tgttgccgcc gatatttaaa ttctgcttcg atcccttcaa tatggtccta ttagaaaaaa        60
     aagaagggat tttggcttat atgggtgaac ggccccacaa ctgatctacc gttacattgc       120
     gatactatcg accggagaaa aaagacaaag ttttttaaag tttttctttt ccaacttgta       180
     gttaaataat aaataataaa gtcgaattac taaagaattt gtcaatactt attggtcggt       240
     cgagccaaca catttgtgcc gcaaca                                            266
//
ID   BEL-17_DEl-I repbase;    DNA;    INV; 4587 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4587
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 448-448 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(84..1160,1085..1426,1657..1869,1962..2336,
FT                 2221..2592,2573..3232,3417..4418)
FT                 /product="BEL-17_DEl-I_1p"
FT                 /note="DUF1758, DUF1759, reverse transcriptase,
FT                 peptidase A17 and integrase."
FT                 /translation="ICRLSINVKAIIDNDVELTNIEKLQHLKSCLKDSALD
FT                 TVRSLEICAVALDLLKNRFNNKRFHIMAILGLPKVDMRSATKLRDMSDKIN
FT                 ANLRALQSMGSVEQISNCILVHVLLQKLDSKTQANWEESAAIDEIPSIDQF
FT                 TTFLSKRCQKLENVEHTAASYSNNSQSGRSRNKSILIATNTLGNGCVVCDN
FT                 SGHSIYSCGQFANLSVQERIRKVKELALCLNCLKKGHQMRNCKSSCCRTCR
FT                 SKHHTLLHLGTQSSTQVLRAPAAEQSTPIAITSSLSTSLLAQNMDSDVVFL
FT                 ATAVISVQSRSGAWIPCRALLDSGSQVHIVTSRLAHQLQLHKTKSPVSVAG
FT                 LGDARLTLKESPFALSNEVSRISCWSWRCSIDSEGVSVCIKLKSRTSDYXA
FT                 CLSALVAPTIAGLPLLQKTRLGWIATGGGSSTLKATAFHGQAVQRELVAAE
FT                 VHMDELVRRFWEVESCGEGGSHQRRTGVTFAERGSHGRTYHSSEAVQHAVT
FT                 VRTFPVALTGDICKMYRCVRVAEPDSYLQCILWRDSPDQEVQYSSLIPNRF
FT                 AGLLITGGSVSNNKLVARGGFKLRKWCSNERDVLDQIPDSEKETFLKFDDG
FT                 SDFTKTLGLAWDPAADVFRFSFLPYRSLQSHVNDWCFPQLLGVRSAWSHWS
FT                 CGCQGQDLPATSLEREVGVGTTGAFHNCSVYDPLGLIGPVVAKAKIFLQQV
FT                 WREKLEWDESFPEALNTSWLKLSSEMGRTQQMKFPRRALHPNGAIEIHGFC
FT                 DASIDAYGGCIYLVSIADGKREVHLFCSKSRVAPLKTLTVPKRLSRFPNKS
FT                 CALLYYWLNCAGRTQHESLRLPVLLLVRFCCSFIWISDEPSRFQVFIANRI
FT                 SLIQELSSGMNWRYVPTDCNPADILSRGASPSELLESALWFRGPKFLLKNQ
FT                 HGWPESCLPVKTLPDLRKRILVGVANEVDISLKCKFVNSWQKITHTFGYVH
FT                 KFVHRIRRPGLNAEDVKMGTQMLIRSIQMSNLADDYRRLHSKRQLHRPASC
FT                 PDFLHSSGSCKCNINVHGYWSGFLRAILLQNRSSKQGACENVRLRFYLFRD
FT                 ESDPPGACSGSSTQAFLGALKRFILTRGKPARIWSDNATNFVGVKNELAEL
FT                 KNLFLSGPHIRAIEEFCLEDSIEWRFIPPRSPHFGGLWEAAVKTAKFHFHR
FT                 SVGPSLLSFDELRTLVCHIAAIINSRPLLPLSENPADLEVLTPAHFLGTVP
FT                 LVLYSEPDVTKLNFNRLDRWQRIAYFQQIFWSRWREEYLTLLQQRSKWRIS
FT                 KPALQVNDVVLVQNENLPPLKWPLARVMELVPGSDGVARVAVIRTSTGTTR
FT                 RAVRKLCVLPKQDLVKGVFQRGENVRSCRSLIKFL"
XX
SQ   Sequence 4587 BP; 1136 A; 1052 C; 1057 G; 1341 T; 1 other;
     tctccggatt tccattctgt gccgtctgaa agatctcatt tgcttcaact gagattgcgt        60
     gaattttctg gtggctatgc tgaatttgcc gactttcaat caatgttaag gctatcatcg       120
     acaatgacgt tgagctcact aacattgaga agctgcagca tttaaagtct tgcctgaagg       180
     attccgcttt ggatacagtg cgctcattag aaatttgtgc tgtagccttg gatttgttga       240
     aaaaccgttt caataataag cgttttcata taatggcaat tttgggtctc cctaaagtgg       300
     acatgcggtc cgcaacgaag ctgagagata tgtccgataa aataaatgct aatctacgtg       360
     ctcttcagtc aatgggttcg gttgagcaaa tttcaaactg cattcttgtt catgttttac       420
     tccaaaaatt agatagcaaa actcaggcca attgggaaga atctgcagct attgatgaaa       480
     ttccttcgat tgatcaattt actacatttt tgtccaagcg ttgtcaaaaa ttggaaaatg       540
     tagagcacac tgcagcatcg tactcaaata attcacaatc aggaagaagc cgcaacaaaa       600
     gcattttaat tgccactaac actttgggaa atggatgcgt tgtgtgtgac aacagtggcc       660
     attcaattta tagctgtggt caattcgcca atctgtcagt acaagagcgt attcgaaagg       720
     taaaggaatt agcgctctgt cttaattgcc taaagaaggg gcatcaaatg cgcaattgta       780
     agtcaagctg ctgtcgaact tgcaggtcca agcatcacac ccttttgcat cttggcactc       840
     agtcttcgac ccaggttctg cgagctcccg ctgcagaaca aagtacgcca attgcaatta       900
     cttcaagcct ttctacctct ttgctggctc agaatatgga ttctgacgtt gtctttcttg       960
     caactgcagt cataagcgtt caaagtcgat caggtgcttg gatcccatgc cgtgcgctgc      1020
     tagactcggg atctcaagtc cacattgtga cttcccgact cgctcaccag ttgcaattgc      1080
     ataaaacgaa gtctcccgta tcagttgctg gtcttggaga tgctcgattg actctgaagg      1140
     agtctccgtt tgcattaagt taaagtcgcg tacctctgat tactkcgcat gcctatctgc      1200
     tctagttgct ccaacgattg ctgggctacc cctattgcag aaaacgaggc ttggttggat      1260
     cgctacagga ggcggatctt ctactctcaa ggcaactgca tttcacggtc aagctgtgca      1320
     gcgtgagttg gttgctgctg aagttcatat ggatgaacta gtccgtcgct tttgggaagt      1380
     tgagagctgt ggtgaaggcg gaagccacca aagaagaact ggagtgtgag gctcatttca      1440
     agaccgactt tcgtcgttta gactctggtg aatattccgt acgattgcct gcaaagaaca      1500
     ctctagaatt actgggtgaa tcgtaaaatc cttcgtgccc agaggcttct tgagtctttg      1560
     catttaattt ctgccccacg actgtgtttt caagaaagac agcaccacga ctaaattgcg      1620
     agtcgttttt gatgggtctt ccaaaacatg aagtagacat tcgctgaacg aggttctcat      1680
     ggcaggacct accattcatc agaagctgtt caacacgctg ttacagttcg tactttccct      1740
     gttgcattga ctggtgatat ctgcaagatg tatcggtgtg ttcgcgtggc tgaacccgat      1800
     agctatcttc aatgtattct ttggcgtgac tcaccggacc aggaggtgca gtattcaagc      1860
     ttgataccgt gacttatgga actaagcctg cagccttttt atccgttcga gcgatgcatc      1920
     aattggcgag tgtgagaaga gcactttcca atcggttcta aaatcgtttt gcgggacttc      1980
     tgatcacagg aggctctgtc tcaaacaaca aacttgttgc acgaggtggc tttaagctca      2040
     ggaaatggtg ttccaacgag cgtgatgtcc ttgatcaaat tcctgactcg gaaaaagaaa      2100
     cattcctgaa gtttgacgat ggcagcgact ttaccaagac actgggtctt gcttgggacc      2160
     ctgcagcgga tgtctttcgt ttttcttttc tcccatacag gtctctccaa agccatgtaa      2220
     acgactggtg ctttccacaa ttgctcggtg tacgatccgc ttggtctcat tggtcctgtg      2280
     gttgccaagg ccaagatctt cctgcaacaa gtctggagag agaagttgga gtgggatgag      2340
     agctttcctg aggcactcaa cacatcatgg ctgaagttgt catctgaaat gggtcgtact      2400
     cagcaaatga agtttcctag acgtgcgttg catccaaatg gtgctattga gatccacgga      2460
     ttctgcgacg ctagcatcga cgcatatgga ggatgtatat atctcgtttc aatagctgat      2520
     ggcaaacgag aagtgcatct attttgctca aaatctcgtg tggcgccttt gaagactctc      2580
     acggttccca aataagagtt gtgcgctgct ttattactgg ctcaactgtg cgggacgtac      2640
     gcaacatgaa tctcttcgat tgcccgtttt attgctggtc agattctgct gtagctttat      2700
     atggataagc gatgaacctt cacgttttca agtttttatt gctaatcgaa tatctttaat      2760
     tcaagagcta tccagtggca tgaattggcg ctatgtaccg actgactgca atccagccga      2820
     cattttgtca agaggtgctt ccccgagcga gcttctggaa tctgcccttt ggttcagagg      2880
     cccaaaattt cttctcaaga atcagcacgg ttggcctgaa tcttgtttgc ctgtgaagac      2940
     tctccccgac ctcagaaagc gcattttggt cggcgtcgcc aacgaagtgg atatatcttt      3000
     aaaatgcaaa ttcgtgaatt cttggcaaaa gatcacccac acctttggat acgtacacaa      3060
     atttgtccac cgcataagac gtcctggtct caacgccgaa gatgttaaaa tgggcactca      3120
     gatgcttatc agaagtatcc aaatgagcaa cttggctgat gactaccgga ggctgcattc      3180
     taagcggcaa ttacatcgtc cagccagttg tcctgacttt ctccattcat cgtagctttg      3240
     gtctgatgcg agttggtggc atactaccac gccagcatcc agttcacgtg ctaacatgcg      3300
     tcttcaattt tggccgatag gtggccgaaa aacagtatcg gcggcaacgt ccaagtgcgt      3360
     catatgtttc cgagctaaac cacaattatc tcaactttaa tggctgacct acctaaggat      3420
     cgtgtaaatg caacatcaac gttcatggtt actggtctgg atttctgcgg gccattttgc      3480
     tacaaaatcg gagttcgaag caaggtgcct gtgaaaacgt acgtttgcgt ttttatctgt      3540
     ttcgcgacga aagcgatcca cctggagctt gttcaggatc ttcaacacaa gcattcttgg      3600
     gagcattgaa gcggtttatt ctcaccagag gcaagcctgc acggatatgg tcagataatg      3660
     ctacgaactt cgttggagtt aaaaacgagc tggctgagct gaagaattta ttcctgtctg      3720
     gcccccacat tcgagctata gaggaattct gcctggaaga ttcaattgag tggcgtttta      3780
     ttccccctcg ttcgcctcac tttggaggcc tctgggaggc tgcagtaaaa acggccaaat      3840
     ttcatttcca tcgttctgtt ggcccatctt tattatcgtt cgatgaattg cgtacactcg      3900
     tttgccacat tgcggcaatt atcaactcac gacctttact ccctctttca gagaatccgg      3960
     cagatcttga ggtgctaact cctgcacact ttcttggcac agttccgctg gtgttgtact      4020
     ctgagcctga tgtcacaaag ctgaacttta accgtttgga ccgctggcag agaattgctt      4080
     attttcaaca aatcttctgg tcacggtggc gtgaagagta tttaaccctg ctgcagcaac      4140
     ggtcaaagtg gcgcatctcc aaacctgcgc tacaagtcaa cgatgtcgtc ctggttcaaa      4200
     acgagaactt gcctcctctt aaatggccat tagccagggt catggaattg gtgcctggat      4260
     ctgatggagt tgctcgtgtg gcagtgatac gaacatcaac tggaaccact cgaagagctg      4320
     tccgcaagtt gtgcgtgctg ccgaagcaag atctggtcaa gggggtcttc caacgggggg      4380
     agaatgttcg gtcatgccgc agtctaatta aattcttata acttaaaatc ttaacgtaaa      4440
     ttaagttctc gatgttttct tttgcctttg tattgcctgc gtggctctct ttcaattgct      4500
     gtaattgcta ctcctttttg aattcctttc gccaatcgcc gcctttgtcc acggcaagaa      4560
     tcgtttttag ttgtttagtt tcgattt                                          4587
//
ID   BEL-17_DEl-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-155
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 449-449 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. The 5' terminus is indicated by the
CC   similarity to BEL-3_DFi-LTR.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 155 BP; 42 A; 41 C; 28 G; 44 T; 0 other;
     tgtactcgct cgctgaaggc acggtcgcag atcgcctgcc tattcttttc gttttacttt        60
     cgctagttaa aaggcacaga caaatcggtc tgcctgccca accaactaat ctcaaacata       120
     aacatttaaa ctttgtaaat aaggccttgg tgcca                                  155
//
ID   BEL-17_DTa-I repbase;    DNA;    INV; 6091 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DTa_;
KW   BEL-17_DTa-LTR; BEL-17_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6091
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1595-1595 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [5105-5659] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1408..3189
FT                 /product="BEL-17_DTa-I_1p"
FT                 /translation="MLQMLEEKREAEQRYIEQKYNILSHQRDSNMAWTPTT
FT                 MGPSSAQLSARQILPADLPTFNGNADEWPTFISAFENSTSAAGFSNVENML
FT                 RLQKCLKGKAYDLVRDKLLLPSMVPEVISTLKTFFGRPDQILDRLIEKAKR
FT                 ISVNKDRQALSDWLYKIAEAASTVVSTSYSRTNNVHTHTSYNDVQPQHAQS
FT                 EEQSHVAHRSELTCRMRTARRSAIPRRKATVVRDRLCFKCLKVHGRRCFST
FT                 SECGVGGCESRHHPLLHKGSQNINVVTSHQVKSAEADQYFRIVPIRIQGDN
FT                 IKVDTYAFLDEGSSVTLIDESFFKRLNIRGTPDPICMQWTNQTTRKESNSV
FT                 RFNIRVAGAGATKTYWLNNVHTVKNLGLPKQTVNVQELRIKFPHLDGIPLQ
FT                 SYWNAEPMILIGNNNWKLAVPRKVKEGKWNDPIASKCILGWGLQGSTSPKT
FT                 AFSMHHCQCNWDKIEKSVKESFCVESVTPKTFRSVDDEKALEILDKTCSKS
FT                 EGHYQVGLLWRNNNPILPESYNNAVKRLNCLKAKINREPELFDKIEVQINN
FT                 LLKKGYANELSSAELVEQPERVWYLPIFITHNPNKPGPIYYIHSPKY"
FT   CDS           3192..5195
FT                 /product="BEL-17_DTa-I_3p"
FT                 /translation="MAFRVGKIAVCGDIAEMFHQIRILEADAHAQRFVWYN
FT                 KETQAIRTFVMRSMTFGISCAPCIAHYVRDKNAEEYKLQSPRAFEAITKAH
FT                 YVDDYIDSLANETEAIEVTQKVRDIHAAGGFHIRNWASNSPEVLKHLQGDS
FT                 LVLQPPKELGDPEKVLGMFWEPTTDVFKYVFRFARMKRDVLSEEALPTKRE
FT                 VLQVLMSIFDPLGFLSCYTIGLKMLLQEIWRTGIGWDDILPGPQLAFWTKW
FT                 KDLLPQATTIQVPRRYSPLLHMADFIELHTFVDASEYGYAAVCYFRIGKGN
FT                 DITVSLVAAKSKVAPLKPLSIPRMELLAAVIGARLSYKARSTRNISVDQHT
FT                 YWTDSRTVLSWLTMDPRHFHAFVMHRVGEILETTSASQWHWVPTKLNVADM
FT                 ATKFINKPNSQEWINGPSFLQHSKDQWPEQPTLCPSYEVNTDEIRKTVLVI
FT                 RKQSIGAIPLNVERFSDWKRLYRATATFLLYLAILRSRCTAGKIQKVLTLE
FT                 QLTSAKNLLYKTAQQDAFKSELETLQSDGFINRPSALIGLNIYIDSDGIMR
FT                 TQGRSDTINQSRDQIVLPKRHHITHLIIKEFHETNHHMLHEGSINLIRTVY
FT                 FIPQLRVVYKSVRKACQRCKNNSAIPDPLRWHHYHQLESLASRGPLRTLEW
FT                 ISSVQFLLTWADTRKNVGV"
FT   CDS           5075..5998
FT                 /product="BEL-17_DTa-I_2p"
FT                 /translation="MAPLPPARIASFERPFTYTGVDFFGPILVNVGRHKEK
FT                 RWGVIFTCLTLRAVHIEIAHSLDTSSCVMCLANFMSRRGTPKEIFSDNGTN
FT                 FKATEKIVKEELKNVEFDKLAVKYDKIKWRFNPPAAPHMGGAWERLIRSIK
FT                 MVLKSISPNANYNDESLKNALISAEYVINSRPLTFVSLEAEDDDALTPNHL
FT                 LLGSADGFKPPVTKESNPRQRWCQANELADLFWRRWVKEYMPIITRRSKWF
FT                 PKRRPLAIDDVVIVVDENLPRNLWPKGRITDVVTAKDGQVRSATIKTQHGI
FT                 MVRPTTKIAVLDVALK"
XX
SQ   Sequence 6091 BP; 1919 A; 1444 C; 1299 G; 1427 T; 2 other;
     ttctttaaaa aatcttgtta ttcgcgtcag aacgattaag ttccgcgtgt gcaaagaaac        60
     accctaagtg gctgcgtctg aacaataaag ttccgtagta ttaaaattaa aaaacaattt       120
     agtttcaatc gcgtgttaac taataattag tgctcagctg ggtctattag aacaagaaag       180
     ttccgcagtc ccgtacacta actttacttt taccgcaaac ctcaaattaa ctgcgtcatt       240
     tacgatcagt gagtacatat caagcgcaga cagaagctgg caaataaatt ttgcgaagac       300
     gctctgcgta ttggtattag tgatttgtga caaaaccaac aagaacaaaa ctaaaatctg       360
     attacacggt ttgcctctct gccaaataag gctgtgagta ggggcatagc ttgctgaagc       420
     aaataaattt taccccaacg ggcagagaag cttacaaccg aaatcaaatt ggcgaatacg       480
     taaaaatggt tccactcgga gatgataatt caacgtgcgg ttcttgcaaa aaagatgcaa       540
     ccggaaaaga catagtatgg gttcaatgta cgtcagaacg attaagttcc gcgtgtgcaa       600
     agaagcaccc taagtggctg cgtctgaaca ataaagttcc gtagtattaa tattaaaaaa       660
     caatttagtt tcaatcgcgk sttaactaat aattagtgct cagctgcgtc tattagaaca       720
     agaaagttcc gcagtcccgt acactaactt tacatttacc gcaaacctca aattaactgc       780
     gtcatttacg atcagtgagt acacatcaag cgcagacaga agctggcaaa taaattttgc       840
     gaagacgctc tgcgtattgg tgttagtgat ttgtgacaaa accaacaaga acaaaactaa       900
     aatctgatta cacggtttgc ctctctgcca aataaggctg tgagtagggg catagcttgc       960
     tgaagcaaat aaattttccc ccaacgggca gagaagctta caaccgaaat caaattggcg      1020
     aatacgtaaa aatggttcca cgcggagatg ataattcaac gtgcggttct tgcaaaaaag      1080
     atgcaaccgg aaaagacata atatgggttc aatgtaataa ttgcaaaact tggtaccatt      1140
     tctcttgtgt gcgtgaagaa agtgatcata acattaaagg ctgggcctgc cctccttgcg      1200
     aaaagattga tacaacacag caaggcgccg ccgcgcaggg attggaaaat gctccattac      1260
     ctctcgaaaa ggacaagctg gactctacgc agactaatag aaaaccccta cccaatgctt      1320
     tacagcaaat aaatgtagcc gaagttgagc ttccgaaaat gagtctagca agaaacaccc      1380
     ggtataaata tatcaactaa cattcttatg ttacagatgc tagaggagaa acgagaagct      1440
     gagcagagat atattgaaca aaaatacaat attttgtcgc accaacggga ttccaacatg      1500
     gcatggacac ccacaacaat gggccccagc agcgctcaat tatcagcacg acaaatacta      1560
     ccagccgatt tacctacatt caacggaaac gcagacgagt ggcccacctt tataagcgcc      1620
     tttgaaaaca gcacctctgc tgccggcttt tcgaatgtcg aaaatatgct tcggcttcaa      1680
     aaatgtctta aggggaaagc gtacgatcta gtccgagaca agcttttgtt gccatctatg      1740
     gttcccgagg ttataagcac attgaaaaca ttctttggtc gcccggatca aattctggac      1800
     cgcctaattg agaaagctaa aagaatctca gtaaacaagg acaggcaagc acttagcgat      1860
     tggttgtata agatcgccga agccgcctcc acagtcgtct caacttcata ctcaaggacg      1920
     aataacgtac acacccatac cagctacaat gacgtacagc cgcaacatgc gcaatcggag      1980
     gagcagtcac acgtagcgca ccgatccgag ctcacctgcc gtatgcggac agctcgtcgc      2040
     tcggccatcc cacgaaggaa ggcaacagtt gttcgcgaca ggctctgttt taagtgcctt      2100
     aaagttcatg gccgtagatg cttctctacc agcgaatgcg gtgttggcgg atgtgaatcg      2160
     aggcatcatc ccttacttca taaaggcagc caaaatatca acgtcgtcac gtcccaccaa      2220
     gtcaagtcag ctgaagctga ccaatatttt cgtatcgtgc caatacggat ccaaggtgac      2280
     aatattaagg ttgacaccta cgctttcctg gacgaaggct cttcggtcac actcatagac      2340
     gaatccttct ttaagcgttt aaacatacgt ggcacccccg atccgatctg tatgcagtgg      2400
     accaatcaaa ccaccagaaa ggagagcaat tccgtacgct tcaatattcg agtcgccgga      2460
     gcaggcgcca ccaaaacata ttggctaaat aatgttcaca cggtgaaaaa cctaggcttg      2520
     ccaaaacaga cggtcaacgt acaagaattg cgcatcaagt ttccacatct agatggaata      2580
     cccctacaat cttattggaa tgccgaacca atgattctca ttggaaacaa caactggaag      2640
     ctcgctgtgc cacgaaaggt caaggaagga aaatggaatg accccattgc gtccaagtgt      2700
     atactcggtt ggggactaca aggctccaca agccccaaaa ctgccttttc catgcaccat      2760
     tgccagtgca actgggacaa gattgaaaag agcgttaaag agagtttttg tgttgaatct      2820
     gttacaccaa agacgtttcg ttctgtggat gacgagaagg ccctggaaat attggacaaa      2880
     acttgttcaa aaagtgaagg ccattaccaa gtaggacttc tttggcgcaa caataatcca      2940
     attcttccgg agagctacaa caacgcagta aaacggctaa actgtctaaa ggctaagata      3000
     aaccgagaac ctgaactctt tgacaaaatt gaggtgcaga taaataatct actcaaaaaa      3060
     gggtatgcaa acgaactgtc cagtgccgaa cttgtggaac aacctgaacg cgtgtggtac      3120
     cttccaatat ttataaccca caatccgaat aagccgggcc cgatttacta catccactca      3180
     ccgaagtatt aatggcgttt cgagttggta aaatagctgt ttgtggcgac attgctgaaa      3240
     tgttccacca aattcgaatc ctggaagcag acgcgcacgc tcaacgtttc gtgtggtaca      3300
     acaaggaaac acaggcaatc agaaccttcg taatgagatc tatgacattc ggaatatcct      3360
     gtgcgccatg cattgctcat tatgttcgcg acaagaacgc ggaagaatac aagttgcaaa      3420
     gcccgcgtgc atttgaagcc attaccaagg cacactacgt cgacgactac atagatagcc      3480
     tagccaacga aactgaagca atcgaggtta cccaaaaggt ccgagacata cacgcggctg      3540
     gaggcttcca tattaggaac tgggcttcta attcacccga agtcttgaaa catttacagg      3600
     gtgattcgct cgttctacaa ccgccaaagg aactcggaga tccagaaaaa gtactcggta      3660
     tgttttggga accaacaact gacgtgttta aatatgtttt tagattcgca cgaatgaaaa      3720
     gagacgtcct ttccgaagaa gccttgccaa ccaaacgcga ggtactgcaa gtgttgatgt      3780
     ccatattcga tcccttagga ttcctatcct gctatactat tggccttaaa atgcttcttc      3840
     aggaaatttg gcgtacaggc attggctggg acgacatctt accaggacct cagctggcat      3900
     tttggacgaa atggaaggac ttgctacccc aagctacaac tattcaagta ccgcgtcgtt      3960
     actcaccctt acttcatatg gcggatttca tagaactaca tactttcgtg gacgccagcg      4020
     agtacggata tgccgccgtg tgttactttc ggataggaaa agggaacgat atcactgtct      4080
     cactggtcgc agcaaaaagc aaagtggccc ccctcaaacc actttccata ccacgcatgg      4140
     agctgcttgc tgctgtaatc ggtgcacgct tatcctacaa agcgcggagc actcgcaaca      4200
     taagcgtcga tcaacatact tattggactg actcaaggac agtactttcc tggctgacga      4260
     tggacccacg tcattttcac gcttttgtaa tgcaccgcgt aggagaaatt ctggagacca      4320
     caagcgctag tcagtggcat tgggtaccaa cgaagcttaa cgtagcagac atggcgacaa      4380
     agtttatcaa caaaccaaac tcacaagaat ggataaacgg cccatcattt cttcagcact      4440
     caaaggacca atggccggaa cagcccactt tatgcccatc ttatgaagtc aacactgacg      4500
     agattcgaaa aacggtcttg gtaatcagaa agcaaagcat aggagcgata ccattaaacg      4560
     ttgaacgatt ttccgattgg aagcgcttgt accgagcaac ggctaccttt ctgttatatc      4620
     tggccattct tcgatctaga tgcacagcgg gaaaaatcca aaaagtgctt acgctcgaac      4680
     aactgacgtc ggccaaaaat ctactctaca agacagcaca acaagacgcc ttcaaatcgg      4740
     aacttgagac tcttcaatcg gacggattca taaatagacc cagcgcattg atcggactga      4800
     acatttacat agatagtgat ggaataatgc gtactcaagg tcgttcagac accataaatc      4860
     aaagccgaga ccaaattgtc ttgccaaagc gtcaccacat cactcatcta ataataaagg      4920
     aatttcacga aacaaaccat cacatgctgc acgagggaag tattaatctt atccgaaccg      4980
     tatattttat tccccagtta cgtgttgtct acaaatccgt acggaaagcg tgccaaagat      5040
     gcaagaataa ctcggcgatc ccggatcccc tcagatggca ccactaccac cagctagaat      5100
     cgctagcttc gagaggccct ttacgtacac tggagtggat ttcttcggtc caattcttgt      5160
     taacgtgggc cgacacaagg aaaaacgttg gggtgtaatt tttacatgcc tcactttgcg      5220
     cgcagttcat atagagatag cccacagtct tgacactagc tcttgcgtaa tgtgcctggc      5280
     aaactttatg tcgcgacgcg ggacgcccaa ggaaatattt tccgacaatg gaactaattt      5340
     taaagcaact gaaaagatcg tcaaagagga gctcaaaaat gttgagtttg acaagctcgc      5400
     ggtaaaatat gacaaaatca aatggcgctt caatccacct gccgccccac acatgggcgg      5460
     ggcatgggaa cgtttaattc gatcgattaa aatggtactc aaatcaattt ccccgaacgc      5520
     caattacaac gacgaaagtc tcaaaaatgc tcttataagt gcagagtacg ttataaactc      5580
     ccgcccactg accttcgttt ccttggaggc agaagacgat gacgctctta cccccaacca      5640
     tttattgtta ggatccgcag acggcttcaa gcccccagta acaaaggagt caaacccaag      5700
     acaacgttgg tgccaggcaa acgaactagc cgatctattc tggaggagat gggtgaagga      5760
     atacatgcca ataatcacca ggcgatccaa atggtttccc aaacgacgtc ctctggctat      5820
     tgacgacgtc gtaatcgtag tggacgaaaa tctgcccagg aacctttggc ccaaaggacg      5880
     aattacagat gtcgtcacag ccaaggatgg ccaagtgaga tccgctacta ttaagactca      5940
     gcatggtatt atggtacggc caacaaccaa aatagctgta ctggacgttg ctctaaagta      6000
     aatgtaagca ccccatagct gtttacgtgg gggggaatgt taccgcccca gcacattttg      6060
     aattccgatc aatttaatta aatatatcag c                                     6091
//
ID   BEL-17_DTa-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_DTa_;
KW   BEL-17_DTa-I; BEL-17_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-195
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1596-1596 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 195 BP; 68 A; 38 C; 36 G; 53 T; 0 other;
     tggatcaaat attaatcgac atatctggcc gacaacccaa cggccacact gttgcaaagc        60
     gatcctcaag aggagaggaa gattttttaa agctcttgat ttactattaa tttgtgactt       120
     gatttaacca ataaaaatac atcgaagtac aaacaaccgc tgttgaaagc ttctattaaa       180
     gggtcggctg taaca                                                        195
//
ID   BEL-17_MoPha-I repbase;    DNA;    INV; 5303 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5303
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1143-1143 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5262
FT                 /product="BEL-17_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MRLSHIENRLEQQLTLRDLIVNSVDNLTKVGLTKITP
FT                 NRVNARLLALKEHWEKFSLVNDAIGLAMTKISSHDKLSLQQHPYFENNVFL
FT                 VTHECYLDSIEKMTSLLETDSESVNDTPSTQSAPQDLNIHAWLHNSRLPRL
FT                 DTPKFNGSPEDWLDFKDLFHTMVLSRATLSPVEKLQYLKLSLIGPAARLLK
FT                 NTPSTSGNFEKAWNAVVSYYENKRNLVSSTLHSLFTLKRLTKESARDLERL
FT                 YNELTDLYRSFETLNRPIETWDDFLVFIAVEKLDSESVKVWEQHLGSSTEP
FT                 PTWNQFLDFLLTRLRSVQAYEKSRIGKMPPPQQNFAKSHFQGRSQEFSENS
FT                 DSCPLCSENHYLSSCPQYKDKSVQQRTAIVSQHNLCYNCLRPHRVSTCRST
FT                 RRCLKCGKKHHTTIHRIDTKNEPGTSTSSEVPTANSLSNDTHVLHSAIEQN
FT                 SVSSCILLATARVVIVSSKGETATARALIDQGSEISLVSEHLVQQLRLPRT
FT                 SSSISLIGVGAKKSSKTKGLTHFTLKAHFNSDIECHISAYILPQLTTSLPS
FT                 AKVQSHSESHLNGLTLADPDYTSPGKIDIILGADVYPQIIEEGIRKGNSNS
FT                 LLAQRTKFGWIISGLVNRTTVSDSSRSYHITMDRELHDLLQKFWKLEEIPS
FT                 SSISLLSLENQKCEQHFTTTHSRDHEGRYTVRLPFKQSVSKLGDSRAKATR
FT                 IITSISKKFAANPDYAQAYHAFLKEYEDLHHMERVSASAPEPHIAYYLPHH
FT                 GVIRENSITTKLRVVFNGSSRTTTGISLNDLLHTGAKLQIDVFDVLTWFRQ
FT                 FQFVFTSDIEKMYRQIKVHKDDWDFQRILWIDKNNKLITFQLSTVTYGLAC
FT                 APFLALRTIEQLVKDDGTKFPLAIPSLTKGRYVDDIFGGADSIEQAQEIVK
FT                 QLNQLCTAGGFPLQKWISNHPDILAAIPQERQTQFTAFQFEDTTNTQILGL
FT                 NWNPSIDNFQFSVTPTTTTIITKRNILSTVAKLFDPLGFLAPVTINAKILI
FT                 QELWSLKLDWDDSLPSPVSTKWTNFMEQLQYISELSFPRWIHLKTNQVFEF
FT                 HGFCDASLQAICATVYIRVLHSNKQSTISLVCAKTKVAPIKKMTIPRLELT
FT                 GAVLLTKLMSHVLRIFEFNHAPLFMWTDSSIVYTWINNHPSRWKDFVHNRV
FT                 CYIHETLPQAIWKFVPGTENPADCATRGLTPAKLQEHSIWWSGPSWLLQDP
FT                 STWPKKPHSPSHKENLEERPIQVSTINVESNKLWDLINRYSKLTRLFRITA
FT                 ICKRFIARLQKSSETSITIPITTQEIESAKIYWITRVQQIAFQKELQILSN
FT                 GQSLPRSSPLLRLTPVVDSNGLLRVGGRLQFSSLPANFKHPFILPRESPLS
FT                 ALIISDAHLRTMHGGTQLTLSFIRNDYWIIGGRAPIRSFILKCVRCARFRQ
FT                 KRAQQIMGQLPIERLTPSRPFLNSGVDYAGPFILKNWKGRNSRTYKAYIAL
FT                 FVCHSTSALHLELVTDLTTEGFIAAYKRFTSRRGICSTLMSDCGTNLKGAD
FT                 FELQHLFSASSKELGKLASLLSKDGTQWKFIPPASPHFGGKWEAGVKSVKH
FT                 HLRRVVGNHLLTYEEMSTVITQIEAVLNSRPLCPLTDDPDDLNVLTPGHFL
FT                 SGGALATLPEPSLENIKLSHLSRWQLTRQMLDSFWTRWSKECLQRYLAMHK
FT                 WNKVAPPLKKDDLVLVVDERYPPSKWPLGRIIDTHLGKDGHVRVVTVRTQT
FT                 STLKRSIVKICPLPIANQSL"
XX
SQ   Sequence 5303 BP; 1578 A; 1303 C; 961 G; 1461 T; 0 other;
     ttttggtcct tcgagccgga ttccggcggg cggcacgtca ggatgagact cagtcacatc        60
     gagaatcggc tggaacaaca gcttacgctt cgagacttaa ttgtaaattc cgtcgataac       120
     ttaacaaaag tcggactcac taagataacg ccaaatcgcg taaatgctcg ccttttagcc       180
     ttgaaggaac attgggagaa attctcactc gttaatgatg ccattggctt ggcaatgact       240
     aagataagtt cacatgataa gttaagtttg cagcaacacc cttatttcga aaacaatgtt       300
     ttcctggtaa cgcatgaatg ttatctcgat tcaatcgaaa aaatgacttc acttctcgaa       360
     actgattccg aaagtgtaaa tgacacgccg tcaactcaat ctgcgccgca agatttaaat       420
     attcatgctt ggctccataa ttctcgattg cctcgattag acactcctaa atttaatgga       480
     tcacctgagg attggcttga ttttaaagat ttgttccaca caatggttct atcccgcgct       540
     accttatcgc ctgttgagaa gctccaatat cttaaattaa gtttaatcgg acctgctgcc       600
     cgcttactaa aaaacacgcc ctccacttcc ggtaatttcg agaaagcatg gaacgcagta       660
     gtttcttatt acgaaaacaa gcgtaatctc gtaagttcaa cgctccattc tttattcacc       720
     cttaagcgct taacaaagga atcggcacgt gatcttgaac ggttgtataa tgaacttacc       780
     gacctctatc gttcattcga aactctaaat cgacctattg aaacttggga tgattttctc       840
     gtgtttatcg cagtggaaaa attagattcc gaatctgtta aagtgtggga gcagcatcta       900
     ggctcatcca ctgagcctcc tacatggaac caatttttag actttctact tactagattg       960
     cgctccgttc aagcctatga aaaatcgcga atcggaaaga tgcctccgcc acaacaaaac      1020
     ttcgcgaaat cgcatttcca aggaaggtcc caagaatttt ctgaaaattc tgactcatgt      1080
     ccattgtgct cggaaaacca ctacctttca agttgcccac aatataaaga taaatcagta      1140
     caacaacgaa cggcgatcgt gagtcaacac aacctttgtt acaattgcct tcgacctcac      1200
     cgggtatcca cttgtcgctc aaccagacgc tgcttaaaat gcgggaaaaa acaccatact      1260
     acaatccatc gaattgacac gaagaacgag ccaggaacgt cgacctcaag tgaagtaccc      1320
     acagcaaatt cgctatccaa tgacactcac gtgttacatt ccgcaattga acagaactcc      1380
     gtcagttcat gcattttgct tgcgacagct agagttgtca ttgtttcctc taaaggagag      1440
     actgctacgg ctcgcgcctt aatcgaccaa ggctcagaaa tatcactcgt atcagagcat      1500
     ctcgtacagc aacttcgtct tccgcgaacc agttcgtcta tttctttaat cggagtcggc      1560
     gcgaagaaat caagtaaaac aaaggggtta acccacttta cgttgaaagc tcactttaat      1620
     tctgatattg aatgccatat ctccgcttat attttgccac aactcaccac gtctttacca      1680
     tccgctaaag ttcagtcgca ttccgaatca cacttaaatg ggctcacatt agcagatcca      1740
     gattatactt ccccaggaaa aattgacatt atcttaggcg cagacgttta tccgcagata      1800
     atcgaggaag gaattagaaa gggaaatagt aattcactac tcgcacaacg cactaaattc      1860
     ggatggatta tttctggtct tgtaaatcgt acgactgttt ctgacagttc acgttcttat      1920
     cacatcacaa tggacagaga acttcatgat cttcttcaaa aattttggaa gctagaagaa      1980
     attccttcgt catctatatc attattatcc ctggaaaacc aaaaatgcga acaacatttt      2040
     acaaccactc attctcggga ccatgaaggc cgatatacag tcagacttcc gtttaaacaa      2100
     tcagtcagca aactaggaga ttcccgtgct aaagcgacac gaataattac aagcatatcg      2160
     aagaagtttg cagctaatcc agattacgct caggcttatc acgcattttt aaaagaatac      2220
     gaagatttac atcacatgga acgtgtctca gcttctgcac cagaacctca catagcttac      2280
     tacctccccc accacggagt catccgcgaa aatagtatta ctaccaaact aagagtggtt      2340
     tttaatggtt caagtcgaac caccaccgga atctctctta atgatttgct tcatacggga      2400
     gctaagcttc aaattgatgt cttcgacgtt cttacctggt ttcgccaatt tcagtttgta      2460
     ttcacatcag atatagagaa aatgtatagg cagattaaag tccataaaga tgactgggat      2520
     ttccaacgta ttttgtggat tgataagaac aacaagctga tcacattcca actctccacg      2580
     gtaacatacg gactcgcatg tgctcccttt ctcgctctcc gcacgattga acaactcgtc      2640
     aaggacgacg gtacaaaatt tcctttggca attccctctt taacaaaagg tagatatgtc      2700
     gatgacatat ttggcggagc agattcgatt gaacaagccc aagaaattgt taaacagctg      2760
     aatcaattgt gcacggcggg cggatttcct cttcaaaaat ggattagcaa ccaccctgac      2820
     attctagcag ccatccctca ggaaagacag acccaattca ctgcatttca attcgaggac      2880
     accacgaata ctcaaattct cgggttgaat tggaatccct caattgacaa ttttcaattt      2940
     tccgtaaccc ctactaccac gacaataatt acgaaacgaa atattctctc caccgtagcc      3000
     aaattatttg acccgctcgg gtttcttgct cctgttacta ttaacgcaaa aatacttatt      3060
     caagagcttt ggtcactcaa attagattgg gacgattcat taccctcacc agtttcaacc      3120
     aaatggacaa attttatgga acaactacaa tacatttccg aattgtcttt tcctcgatgg      3180
     attcatttaa agacaaatca agtcttcgaa tttcatggtt tctgcgatgc gtcacttcag      3240
     gctatctgcg ccaccgtgta catccgtgtc ttacattcaa ataagcagtc aaccattagt      3300
     ttagtctgtg caaaaacaaa ggttgctcct ataaaaaaga tgaccatccc tcgcctcgaa      3360
     ctcacaggcg cagtcttgct tacaaaacta atgtcacatg ttttgcgcat tttcgaattt      3420
     aatcacgctc ctttgttcat gtggactgac tcatcaattg tttatacatg gatcaataat      3480
     cacccctctc ggtggaagga tttcgtgcat aacagagtct gttatattca tgaaacacta      3540
     ccgcaagcaa tttggaaatt tgtcccgggc acagaaaatc cagcagactg tgctactcga      3600
     ggattaacgc ctgccaaact ccaagaacat tcgatctggt ggtccggacc ttcatggctt      3660
     cttcaagatc catctacctg gccaaaaaaa ccacattctc catcacacaa ggaaaattta      3720
     gaagagcgac ctattcaagt gtccacaatc aatgttgagt caaataaact gtgggacctt      3780
     attaatagat attccaaact cactcggttg tttcgcatca cagctatttg caagcgattc      3840
     atagctcgac ttcagaaatc atctgagaca tcgattacaa ttccgatcac cacacaagaa      3900
     atagaaagcg ccaaaatcta ctggatcaca cgtgttcaac aaatagcatt tcaaaaggaa      3960
     ttacaaattc tctctaatgg acaatcacta cctcgctcga gcccccttct gcgtctcacg      4020
     ccggttgtcg attctaacgg tcttttacga gtcggaggcc gtcttcaatt ttcttcatta      4080
     cccgcgaact ttaagcaccc gtttattctc ccacgcgaat cgccattatc agctcttata      4140
     atctccgacg cacaccttcg tactatgcac ggaggtacac aattgactct gtctttcatc      4200
     cgaaatgact attggatcat tggcggacga gctcctattc gttcatttat tttaaaatgc      4260
     gtacgctgtg cccggtttag acaaaagcgc gctcaacaaa ttatgggaca gcttcctatt      4320
     gaacgattaa caccatctag gccttttttg aattcaggcg ttgattacgc cggacccttt      4380
     attctcaaaa actggaaagg aagaaactcg agaacatata aagcatatat agcacttttt      4440
     gtgtgccact ctacttccgc tcttcattta gaattagtta cggatcttac caccgaagga      4500
     tttatagccg cttacaaacg ctttacctct agaagaggca tctgctccac gctaatgagt      4560
     gactgcggaa caaaccttaa gggagctgat ttcgaacttc aacatctttt ttctgcatct      4620
     tctaaggaac tgggaaaact cgcctcattg ttatccaaag acgggactca gtggaaattc      4680
     attccacctg cttcacctca tttcggcgga aagtgggagg caggagttaa atccgtgaag      4740
     caccacctgc gacgagttgt tggaaatcat ttactcacat acgaagaaat gagtacagtt      4800
     ataactcaaa tagaagcagt tctaaattct cggcctctct gcccgctcac cgacgatccc      4860
     gacgacttaa acgttcttac ccctggacac ttcttatccg gcggagcatt agcgactctt      4920
     ccagaacctt cactggaaaa catcaaactg tcacatctat ctcgctggca actaactcga      4980
     caaatgctag atagtttttg gactcgttgg tccaaggaat gcttgcaacg atatcttgct      5040
     atgcataaat ggaacaaagt cgcgccacct cttaagaaag atgaccttgt ccttgtcgtt      5100
     gatgaaaggt atcctccgtc taaatggcct ctcggtcgaa ttatcgacac acatctaggt      5160
     aaagacggac acgtccgtgt tgttactgtt cgcacacaaa cctccactct aaagaggtca      5220
     atcgttaaaa tctgccctct tccgattgct aaccaatctt tatgatgtat tcgtcaactc      5280
     tagtcaacga aggcgggcgg aaa                                              5303
//
ID   BEL-17_MoPha-LTR repbase;    DNA;    INV; 1379 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1379
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1083-1083 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1379 BP; 384 A; 344 C; 247 G; 404 T; 0 other;
     tgttaagaaa ttaggttatt acaaagaaag atctctaaac cgtttcaagc gacctacaaa        60
     cacatgtttt cgaccgaccc ttttcagact catgcgtcat ttctttccga atttcacacg       120
     tctgtctctt ccggcacgtt catgttcaaa catgcataat tgcaaacggc tgacctcagg       180
     ttactgtcac aaaaaccggt gcggggccgc ccccctcgct tcgcaaagga ctttccccac       240
     cgctactacc taagtttcca ctgcccttct gactttcatt ggcacgcgtc aaatcactcg       300
     acatctcctt aaaccaataa aatatcggaa gaaaagctac gcaatacggt cagagtgggg       360
     accgcgttcg aaaagacacg ttcgacattc attaggtagt ctgccgaatg ctttgagata       420
     gtttagatgt aactactgtt cgacttttct ctctgcgatt ctacacaagt gtgagcgcaa       480
     cttcgatttc catcgaaagc gataacgcga gtttatatgt aaaaaaaaaa accaaatctt       540
     gagtacaatt agcgaactaa gtgtgattat acaagtgtgg agatttcatc aactcagccg       600
     ctcaacgttg aacaacgcgc agttcgggcc attcagacga ccagccgcgg acctgcggac       660
     gtgtcaccct gtcgggctgt gtggggagtc tccggccatt cacacgctct atcccaagga       720
     acctcgaaag cgtatttgct acgtgtcact catttccaat ctaagaactc aagccaccaa       780
     aactcaggtc ttggtcatac caagttctct ctgctgaaaa acaagtaagg ctatcgggcg       840
     tttgcagatc cgagatactc agcgttctaa ggccctcttt tagaacgatt cgccttcagg       900
     accagatctt gcaaaccaaa gatagcaact gtcacataac agttttactt cttatgatcc       960
     ggagaaccgt gaagtgtaac tcaaagaaca tcagaatcgt tacattctaa ggccctctct      1020
     aagaccgatt cgcctttaga attaagattt cgcttttcaa acggagaacc ataaattgta      1080
     attcaacgaa cataagaatc attaccgtct aaggccttct ttaaagatcg attcgccttt      1140
     agaattaagc cgtcgccttt caacaaaaaa aaacactaag ctgtatcaca cttttcaatt      1200
     gtaattgtat cgccaaattc attttattgt ctgttaaata atttaaatat agttttctct      1260
     ttttttatct cgaggtgatt ttgtcttgtt ttcctttgtc cgcacgccgg gacccctttc      1320
     tttttttttt cttttctctc tttcttttca attcaacgca gctacttgcc gctttaaca       1379
//
ID   BEL-17_SiCu-I repbase;    DNA;    INV; 5725 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5725
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4991-4991 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..5708
FT                 /product="BEL-17_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MACAPSHNSLSQTGNQGEDGIFTDKKSTSSGGSQSRM
FT                 TQQQLKMEEARVNLKHWFQKQNGSIEDELXEIEFELTNPNMPDEKKAIYER
FT                 EKQRLLMKQQRLKRNHDREEERISDFTKLEFKKIEAEESQEQHLDPVDEER
FT                 VRKFVFSDQQQEQXRGQSHQSRKEAPRQDEDVEYYDSDDSTTPPKEDKDLL
FT                 VVQLLQKQMEIMDKTEAXRGEKYLPEFGGDPSQWGNFKAAYTRIQKKHKMD
FT                 NGETMMRLQKVLKGKAKVAVEHLMANVLNVNKIMETLELRFGRPEFVLDYL
FT                 VEKAKSCXKPDXSKPETIVEFGTSVEALVANIHAYDEKEYLYNKQLVTELV
FT                 DKLPGRLKECWYEWLEQDPTRKRNLDFFATWMKTRVRLALYQVKPTMPGSG
FT                 TTEERGRSRRGPGSQNSAAVTEEKEEEKDSTSNASTCNVCKKKRHNLERCW
FT                 VFQKKNYDDKWKIVKEERLCFGCLKPGHVTTDCKNQRPCGENGCQRSHHKL
FT                 LHGTRRNFQQQDGKPVRDGFVVPQMNAPPPPPAAAPSISSDGSSDGSPGSV
FT                 GVAVLIEGTDGPLAIVPVRVRKNNTERWRTTYALLDGGATRTMMSDSLAAD
FT                 LGLQGERISYKYKNMGGELKVNSNALKVNLDISGRFKAARFYPLTNVVTVP
FT                 EIGVPAYSINIDEVKKKWPHLNRYKGENLKEVVPEIVVGGDHIFLHAHREL
FT                 LISNMSQPVAMRTLLGWVIQGKFKNSSNRVGVSYYVGGVDDDALHTIVKES
FT                 FKLDDYGMKQNSSGHSVEDKRALEIMKKTAVKNEDRWTVGLLWKDEDESLP
FT                 TDDSKSEATRRLVSTEKRMKKDAAFAEIYQMKIAEYLRKGFIRKLSPEEEA
FT                 VKEKKTFYISHFGVTNPNKPGKFRLVFDAAAKINGYSLNDKLLTGPDLVCN
FT                 IIKILLNYRRHPIAITGDIEDMFHRVFIKEEDRCAQRFLWRDGDTSKDVDT
FT                 YEMLVMIFGATSSPSCATYIKNLNADQYFASHSEAVHAIKEHMYCDDLLTG
FT                 AETPEAAIKLREEISMINDAGGLHLKKFLSNSHEVMLSIPKELRLDINKPQ
FT                 EISGDKSERVLGMWWNPGDDTFSFKVNFHKVDPEVLEGRKPSKREMCSLLM
FT                 SLYDPVGFLSHYKIKGMILLQQVWKGGTDWDEGIPEEIYESWKQWLEDLPK
FT                 IEEIKIPRCYSTNLSKAVSIQLHTLVDSSEAAYSAVSYLRIEYQGKITISF
FT                 LASKIRVAPLKKSTIPRLELQAAVLGVKLAKQLMKDLEXRIDKNYFWSDSS
FT                 TVLAWIKSTTGRYKEFVANRIGYIHENTNAEEWRWVPTKENVADDATRTGT
FT                 PTDLTSSSRWLNGPEFLRMEPEMWPKTKRTSEEDVSFVATCMAMEVISESP
FT                 GGSGDDXVEEWKGIPNIHKYSSYHRLVRATAAVKSAXXHWIKKMRKEAIPX
FT                 PPWEKTADGLNYNITPXDMEXAERRIXKCVQTSXFYVXEKGKMKLTKIKNL
FT                 NLMEGSDGLLRIKGRISNADTGEGMKNPILLPSKHHVVDLIVFAEHRRNAH
FT                 TGKATVFNNLRNKYWIVGGRNVVRRCFERCHYCKIXRAKPIIPEMGELPSY
FT                 RLAANNPPFTCCGVDFFGPVEVTIGRRHEKRWVALFTCLVTRAVYLDIAAG
FT                 LGADEMMMVLSRFIDTYTLPKYMYSDNATNFTAVSKELRKLEKFCGMQWRF
FT                 IPPASPHFGGAWERMVGAVKKVLWNILKDKSPKEEVLRTALKAAENIVNSR
FT                 PLTYVSTDVDDPEAITPKHFLRAAVDVASSSFMGEGIGEEAERMRSLHKKA
FT                 QYYANVFWSRWTKEVLPNLVRRTKWYDSKEPIRVGDVVLLVDDQKPRNTWV
FT                 KGVVSKTFPGKDGLVRVVEVTTRYREGVPVTYKRAVTKIAPIGLHVEDSAA
FT                 VPSGSD"
XX
SQ   Sequence 5725 BP; 1818 A; 1122 C; 1492 G; 1262 T; 31 other;
     tttatggtgc cgaaacccgg gaaagtttcg aaaatacaga agttttaaaa tctgaaaatt        60
     taaccgacga gatggcgtgt gctccaagtc acaattcatt gtcacaaact ggaaatcaag       120
     gcgaggatgg gattttcacg gataaaaagt ccacctcgag cggcggatct cagtcaagaa       180
     tgacacaaca gcaactgaag atggaggagg cacgtgtcaa tttgaagcac tggttccaaa       240
     aacaaaatgg ctcaatagaa gacgagctgg wagaaatcga atttgagctg accaacccaa       300
     atatgccaga tgaaaagaag gctatctacg agcgtgaaaa gcagcgactg ctaatgaaac       360
     agcagcggct caagagaaac catgaccgtg aagaggaacg gatatcagac ttcaccaaac       420
     tggaattcaa gaaaattgaa gctgaagaaa gccaggagca acacttggat cctgtcgatg       480
     aagaaagagt tagaaaattt gtattttctg atcaacagca agagcagsgt cgtggacaat       540
     ctcatcaatc aagaaaggag gctccgcgtc aagacgaaga tgttgaatat tatgacagtg       600
     acgacagcac cactccgccg aaggaggaca aggatttact ggttgttcag ctcctgcaga       660
     aacaaatgga gatcatggac aagacagaag ctkctcgwgg agaaaagtac ttgccagaat       720
     ttggaggcga cccttcccag tgggggaatt ttaaggcagc atacacccgt atccagaaaa       780
     agcacaaaat ggataacggc gaaacaatga tgagacttca gaaagtctta aaaggaaaag       840
     ccaaggtagc agtggagcat ctcatggcca acgttctcaa cgtgaacaaa attatggaga       900
     ctctcgagtt gcggttcgga aggcccgagt tcgtgcttga ttatctcgtg gaaaaggcga       960
     agagttgcam caagccagac wgttccaagc cggaaacaat tgtggagttt ggcacttccg      1020
     ttgaagcwct cgttgcaaac atacatgcat acgatgaaaa agaatatctc tacaacaagc      1080
     aacttgtcac agagttagtg gacaagttac ctggaagact gaaggaatgt tggtacgagt      1140
     ggctggaaca ggatcccact cgaaaacgta atttggattt ctttgcaacg tggatgaaaa      1200
     ctcgtgtcag gctggctctt tatcaagtta aaccgacaat gccaggaagc ggaactactg      1260
     aggaaagagg gaggtccaga cgggggccgg ggtctcaaaa ctcagcagca gttacagagg      1320
     aaaaagaaga agaaaaggat tcgactagca acgccagtac ctgcaacgtt tgtaagaaga      1380
     agcgccataa tttggagcgg tgctgggtgt tccagaaaaa gaactacgat gacaaatgga      1440
     aaattgtcaa agaagaaagg ttatgctttg gatgtttaaa acctggccac gttacgactg      1500
     actgcaagaa tcagcgaccg tgtggtgaaa atggatgtca gcgctctcat cataaattgc      1560
     tacatgggac aagaaggaat ttccaacagc aagacggaaa accagtacga gatggattcg      1620
     tggtgccaca aatgaatgca ccaccaccac caccagcagc agcaccttcc atatcaagtg      1680
     atggatcgtc agatggatcc ccaggaagtg ttggagttgc tgttctcatc gaaggtacgg      1740
     acgggccctt ggcgatagtt cctgttcgcg ttagaaaaaa taacactgaa aggtggagga      1800
     ccacctatgc cttgctcgac ggaggagcta ctcgaacgat gatgtcagat tcactcgcag      1860
     cggatttggg cttacaagga gaacggattt cctacaagta caagaatatg ggtggtgagc      1920
     tgaaggtcaa cagcaatgca ctaaaggtga acctcgacat cagtggcaga ttcaaagcgg      1980
     caagatttta tcctctgaca aatgtggtca ctgttcctga aattggagtt cctgcttatt      2040
     caataaatat cgacgaggtc aaaaagaagt ggccacacct gaaccgttat aagggagaaa      2100
     atttgaaaga agttgttcca gaaattgttg tgggaggtga ccacatattt cttcatgctc      2160
     atcgtgagct gctcatcagt aacatgagcc aaccagtggc aatgcggact ctgctaggat      2220
     gggtcattca aggaaaattt aaaaacagca gcaatcgtgt cggagtatcg tactacgttg      2280
     gaggtgtgga tgatgacgca ttgcacacca tcgtaaagga atcattcaag ctggatgact      2340
     atggaatgaa gcaaaatagc agcggccatt cagtagaaga caaaagagca ttggaaatta      2400
     tgaagaagac tgctgtcaaa aatgaagatc gatggactgt gggactctta tggaaggatg      2460
     aagacgaatc ccttcccact gatgattcaa aaagtgaagc aacaagaaga cttgtcagca      2520
     ccgaaaaaag gatgaagaaa gatgcagcgt ttgctgaaat ttaccaaatg aagatagctg      2580
     agtacctgcg taagggattc attcggaagc tcagtccaga agaagaagct gtaaaagaaa      2640
     agaagacctt ttacatctcg cactttggcg taaccaatcc gaacaagcct ggaaagttta      2700
     ggctggtttt cgacgcagct gctaaaataa atggttacag cctgaatgac aaattactga      2760
     ctggtccaga cttggtgtgc aatataatca aaatattgct aaactatcgc cgtcatccta      2820
     tcgccattac tggggacata gaagatatgt tccaccgagt atttattaag gaggaggaca      2880
     ggtgcgccca gcggttcctc tggcgtgacg gagacacttc caaggatgtg gacacgtacg      2940
     agatgctggt gatgatcttc ggggctactt cctccccttc atgtgctaca tacataaaaa      3000
     atctaaacgc tgaccagtat ttcgccagtc attccgaagc tgtacatgca ataaaggaac      3060
     acatgtactg tgatgacctg cttacaggcg ctgagacacc agaagcagca attaaattac      3120
     gagaagaaat ttcgatgatt aatgacgctg gaggactcca tctcaagaaa tttttaagta      3180
     acagtcatga agtgatgctg tctattccaa aggaactgag gttggacatc aataagccac      3240
     aggagatctc cggtgacaag agcgaacgag tgttaggaat gtggtggaat cctggagacg      3300
     acacattcag ctttaaagtc aacttccata aagtggaccc ggaagtactg gagggaagga      3360
     agccgagcaa acgtgaaatg tgtagtttgc ttatgtcttt atacgatccc gtgggctttc      3420
     tctctcatta caaaattaaa ggcatgattc ttctacaaca agtttggaag ggcggaactg      3480
     attgggacga aggaatccct gaagaaatat atgagagctg gaagcagtgg ttagaggatc      3540
     tgcccaagat tgaggaaatc aagatcccgc gctgctactc aactaatttg tcaaaggcgg      3600
     tgagcatcca attacatacg ctagtggata gttctgaagc cgcatattca gctgtgtcgt      3660
     acctgaggat cgaatatcaa ggaaagataa ccatttcatt tctcgcttca aaaattcgtg      3720
     tkgctccgct saagaagagt acwatwccac gtctggaact tcaagcagcg gtgttgggag      3780
     tgaaattggc aaagcagcta atgaaggatt tggaggwgcg aatcgacaag aattatttct      3840
     ggagcgactc tagtacggta ctagcatgga taaagtcaac aacaggacgt tacaaagaat      3900
     ttgtagctaa ccgtatcggc tacatacatg aaaacacgaa tgcagaggag tggcgttggg      3960
     ttccaacgaa agaaaacgta gcagacgacg ctactcgcac cggcactccw acggatctaa      4020
     ckagctcttc ccgttggctg aatggaccag aatttcttag gatggaaccg gaaatgtggc      4080
     ccaagacaaa aaggacaagt gaagaagatg taagctttgt agcaacatgc atggcsatgg      4140
     aggtcatcag cgaatcacca ggagggagtg gagacgatcm tgtggaagag tggaagggga      4200
     ttccgaatat tcataagtat tcttcctatc atcgattagt gmgagcaacc gcagctgtta      4260
     aaagtgcwgs ckgccattgg ataaaaaaga tgagaaagga agccattcca ttmccaccgt      4320
     gggaaaagac agcagacggg ttgaattaca atataacccc tgmagacatg gaggamgcgg      4380
     aaaggcgcat wmtaaaatgc gtacagactt cgkcattcta tgtawcggag aaagggaaga      4440
     tgaagctgac gaaaattaag aatttaaatc tcatggaggg cagcgatgga ctattgcgsa      4500
     tcaaaggaag gatttcgaac gcggatacag gcgagggaat gaaaaatcca atcttacttc      4560
     cttcsaaaca tcatgttgtg gatttgattg tttttgccga gcacagacga aacgcgcaca      4620
     ctggsaaggc gactgtgttc aacaatctca gaaataagta ttggatagtc ggaggaagga      4680
     acgtggtgag gcgctgtttt gaaagatgcc attattgcaa gattkcacga gccaagccga      4740
     tcataccgga aatgggagag ctgccaagtt atcgtctggc agcaaacaat ccacctttta      4800
     catgttgtgg agtcgacttc tttggtccag tggaggtcac catagggagg agacatgaga      4860
     aacggtgggt cgcattattc acgtgtttgg ttacacgagc agtctatctg gacattgccg      4920
     caggactcgg agctgacgag atgatgatgg tgttatctcg ctttatagat acatatacat      4980
     tgccaaagta tatgtacagc gacaacgcga ctaactttac tgctgtgtca aaggagctga      5040
     gaaaattgga gaagttttgt ggtatgcaat ggagattcat tccaccagcg tcaccccact      5100
     ttggaggagc atgggagagg atggtaggcg ctgtgaagaa agtactttgg aacattctga      5160
     aggataaatc tccaaaagag gaagtattac gcactgcgtt gaaggcggca gaaaatatcg      5220
     tcaattctcg ccccttaacg tacgtttcaa ctgacgtcga cgatcctgag gcgatcaccc      5280
     ctaagcactt cttacgtgca gctgtggatg tggcaagttc cagtttcatg ggggagggga      5340
     tcggggaaga agcagaaaga atgcgcagtt tgcataagaa ggcacagtat tatgcaaatg      5400
     tcttttggag tcgatggaca aaggaagttt taccgaactt ggtacgaaga acaaagtggt      5460
     acgattccaa ggaaccaatt cgagttggag acgttgtgtt actggtggac gaccagaagc      5520
     cccggaacac ctgggtcaaa ggagtcgtgt cgaagacgtt ccctggaaag gacggactag      5580
     tacgggttgt ggaggtcaca acacgttatc gtgaaggagt tccggttacc tacaagcggg      5640
     cggtcaccaa gatcgcgcca attggacttc atgtggagga ttcagccgca gttcctagcg      5700
     gaagcgacta aatcaggggc cggaa                                            5725
//
ID   BEL-17_SiCu-LTR repbase;    DNA;    INV; 546 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-546
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5014-5014 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 546 BP; 159 A; 73 C; 128 G; 184 T; 2 other;
     tgttgggact atgattcata atatgttatt gmgtaggttt agagtmgctt tgttattttt        60
     ctctgtattt tgtaaatgtt tagcagacat gctgacgcgc gccggagtcc ctccgaccat       120
     gcagtcggcg tgcattttct tgtgttcttt gtcatttttg tagtcgttca ttgcagtcga       180
     gttgaagcaa gaagaagtag tagtcagtca gaaaaaagga gagagcaaga gcacaagaga       240
     aaaaagtgct gttaataata atattgtttt taactgttgt aaaaattaat ttggagccat       300
     atcttggaag tttaattgtt catggattat taaattgtgg tgaataaagg aacagttaat       360
     taattacttc tttgtgtttc tattttgtga ttatttatac gcaccgttga cgtatatgcc       420
     cggataggct gattgcataa tagtgaaagg cactggagag gagtaaatta gttaacgtag       480
     caaacagtat ttcgaaactt gttataagga tcaggactgg gggagagctt tgaactagcc       540
     ccaaca                                                                  546
//
ID   BEL-17_SpEx-I repbase;    DNA;    INV; 5993 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5993
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6897-6897 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           867..5990
FT                 /product="BEL-17_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADMKGFIKKRASIKAKLTQFNTYLNISKSCKKLSEV
FT                 QVIEIEYRLNIFESLYEKYDALQDELEALVDDPSEQYAEREEFEKLYYGLV
FT                 ASARQLISGARKLLEGDSASEVDSNVSSTHKHNSIRLPKIDIPTFSGSYHD
FT                 WLEFRDTFVSIVHNNTNLDKINKLHYLRASLKGSASLVIDNLDFKSENYDA
FT                 AWKLLCERYDNKRLLVNNHVQALFNVQPIDRESSKSLRYIIDTTNKNLRAL
FT                 ATLGQQVQNSFVDVLIIYIMTSKLDHITNLKWEEHRNTFIEPPTLSDFITF
FT                 ISNRADLLETMEEAKPIATAKSESMPTSLKPKNNIKVPDKSLKPLTCPMCR
FT                 QNHFIFACEQFKGLSVHARIKKAQGLKICMNCLRPGHDDSRCKLGHCKYCR
FT                 QKHNTLLHVDNDNVLSSVHNTALSATQMSSSRIILLSTALVRVTDADGNHH
FT                 SARVLLDSGSTTNFISEDFVRKLHIPTYITNTKVTGINSHFSSCSQGCSVS
FT                 LQSIDDNEYELNIDCFVLPKVSTSVPHTYVDTSNIRIPSNVRLADPTYYIP
FT                 SSIDILVGAEVFWGIIGTGRIALGTHKPTLLESKLGWLISGAYHHSDSSSQ
FT                 VCMHINNLQVDLNRFWELDSVSSVHNHTSEERSCEQHFVDTTYRNCEGRFV
FT                 VTIPFKESPDVLGDSYMLAKQRFLSVERRLGRDLRLKKLYVDFINEYIELG
FT                 HMSESTGRQLDSACSNYLPHHSVLKESRTSTKLRVVFDASAKTKSGKSFND
FT                 IQMVGPTIQDDLLSILLRFRQHKIVISADIEKMYRQILVHDSNRPLQKVLW
FT                 RAEPTHLLKEYTLNTVTYGTASAPFLATRCLLQLAEECSDPSTKFSIARDF
FT                 YVDDFLSGGSSVSETLEKACNVDGILRSAKYNLRKWRSNSGQVLQALGGEA
FT                 GHSDVVILSDDEQSKTLGLQWKTLSDTFSFSINLNITEKATKRHMLSIIAQ
FT                 IFDPVGLVVPCIVEAKIIMQQLWLAKCSWDELVPAHIQYAWNDFQNSLHLL
FT                 NEFKIPRWVLCESASRLQLHIFADASEKAYGACVYVRSISRDGEVTIHLLT
FT                 AKSKVAPIKSTTIPRLELCGALLGSRLYSKVRQSLTLQFDEVHCWCDSTIV
FT                 LGWLATSSNELKPFVRHRVSEIQDTVGGEAWKYVPSAENPADLVSRGLRTD
FT                 KLLSSSLWWSGPQFLTKDKSSWPQFPESHQNHPKLPETITSCHVSHNVIEN
FT                 SISDLWSKFSNFNKIQRVTAYVMRFTSKCNKKSVEFGSLTSTELNNSLNFI
FT                 LRLSQMDSFSEEYHLLKSGKQLPAKNKLLSLSPFFENSSNLIRVGGRLNNS
FT                 FYDYNIKHPILLSSSHPICILLFKMFHLRLMHAGPQLLLATVRHHYYPIGG
FT                 RNLAKKVTHQCVKCCRLKANTIQPIMGNLPNQRLHLEFPFLDTGTDYAGPI
FT                 MIADRKGRGCRLIKCFICVFVCLATRAIHLELVSDLTKEAFLAALNRFIAR
FT                 RGKPRNIFSDNGTTFVGAFNELAKLLSQDLNLNQIDPGINFSFIPAYTPHF
FT                 GGLWESAVKSTKHHLRRVLGLTNLTFEEMATCLIQVEAILNSRPLTPLSND
FT                 PSDLTPLTPAHFLIGRSLIMLPHSQVQNANVNSLKRFQRIDLLKQHFWTRF
FT                 SHEYVVWLQERTKWCRSSGELKEGTMVVVKDNNLHPLMWLLGRIKRVLPGR
FT                 DGVARVADILTKKGVIRRAFNTICPLPVTTVEDSSSRGG"
XX
SQ   Sequence 5993 BP; 1692 A; 1301 C; 1179 G; 1813 T; 8 other;
     tatggtcctt ctaccgttaa catttgaacc aaacaaagaa aatcattagt aacggaatct        60
     tcaaatttca aaaaaaatca acggtcggtt ggagaacaaa ggacttcatc ttcgagttca       120
     agtttcgcaa gtggtcttcg atttcttcgt gtcatcgcct gcattttggt caccgtgatc       180
     ttcgatacgg cagcagtcgt cttcatcgag ttcacaatca acgggcagca taggaaaaaa       240
     cgaacaacca tcgggacttc gtaacaagaa gcatcatcga gtctactctt cggatccatc       300
     caatcttcag cgcattatca gaggttgaca gcataaaacc gtgagaacgt tccaatttcc       360
     ttttctcaaa cattttgcct tatttgcttg tccaattkta acttatttag tkkttttctt       420
     tcaatcgtta atttcataaa cccagtcttc agcttgtcaa cttgtattaa cagaatctta       480
     ttttttttgt aagaaccacc gtagtagaaa atwaaataga agtccgttac atttttcaag       540
     tgtctaatca gtataatttt caatcgcaat tattcatwta tattacaatm tcttgtccaa       600
     atwacttaca ttatttcatk aatttaatat tttttttcaa tttggggtac tttaaaatat       660
     tttgtgtatc gcactatagt ttgaaaaatt ttaaacgcct aagccttttc ttacagcaat       720
     cacacttcgt acagcgtaag attattgtgc atattcgcta gtactgctaa cattgctatt       780
     aataaagtgg aagtgtttat tttttccatt ttttatatct attctcttct tcttctttct       840
     attgcatgtg ctaaatttta actatcatgg ctgatatgaa aggctttatt aagaagcgag       900
     cttcaatcaa agccaagctt acgcagttta atacttattt aaacatttct aagtcttgca       960
     aaaagttaag tgaggtacaa gttatcgaaa tcgaataccg tctaaatata tttgaaagct      1020
     tatacgaaaa atatgatgcc ttacaggatg aattggaggc cttggtggac gaccccagcg      1080
     agcaatatgc agagcgcgag gagttcgaaa agctgtacta cggcttggtg gcttctgcac      1140
     ggcagctgat cagcggcgca aggaagcttc tggagggaga ttccgcaagc gaggttgatt      1200
     ctaatgtttc tagtacccac aaacacaatt caattagatt accaaaaatt gacataccca      1260
     cattttcagg cagttatcat gattggctgg aatttagaga tacatttgtg tctatagtgc      1320
     acaacaacac gaatttggac aaaattaaca aattacatta tctgcgtgct tccttaaagg      1380
     gtagcgcttc tctagtcatt gacaacctcg acttcaaatc tgaaaactac gacgctgcct      1440
     ggaagttgct ctgtgagagg tatgacaaca aaaggttgct tgttaacaat catgtgcaag      1500
     cactctttaa cgttcagcct attgacagag agtcgagtaa gtcacttcga tacataattg      1560
     acaccacgaa caaaaacctt agagcactgg cgacacttgg tcaacaggtt cagaatagct      1620
     tcgtcgatgt tctgatcatt tatataatga ctagtaagct cgaccacatt accaatctta      1680
     agtgggaaga gcataggaac acctttatcg aacctccaac cttgtctgat ttcatcactt      1740
     tcattagtaa cagggctgac ttgctggaga caatggagga ggctaagcct atagctacag      1800
     ctaaaagcga atccatgcca acttcattga aacctaaaaa taatattaaa gtacccgaca      1860
     aatcgttaaa acctttgact tgtcccatgt gtcgacaaaa tcattttatt tttgcatgtg      1920
     agcagtttaa gggtctttct gtacatgctc gcattaaaaa ggctcagggt ttaaagatat      1980
     gcatgaactg tcttcgtcca ggtcatgacg attctcgatg caagttaggt cattgtaaat      2040
     attgtcgtca aaaacacaac accctgttac acgtagacaa cgacaatgtt ctttctagtg      2100
     tacataatac tgcgttatcg gctactcaaa tgtcctcatc tcgaataatt ttgctttcta      2160
     cagcgctcgt gagggtgact gacgctgacg gtaatcacca ttcagcacgg gtcttgctgg      2220
     acagtggaag taccaccaat ttcatttctg aggactttgt tcgtaagctg catattccta      2280
     cctacattac caacaccaag gtaacaggta tcaactctca tttttctagt tgtagtcagg      2340
     gatgctcagt gtcattacaa tcaattgatg acaatgagta cgaactgaac attgattgct      2400
     tcgtattgcc gaaagtgtca acatcggttc cacatactta tgttgatacc agcaacatac      2460
     gtataccttc gaacgtgcgc cttgctgacc ccacttatta tattccgtca tcgatcgata      2520
     tccttgtcgg tgcggaagtc ttttggggta tcataggcac tggccgtatc gcattaggta      2580
     ctcataagcc cactttactt gagtcaaaac taggttggct catttcgggt gcatatcatc      2640
     attcggattc ctcttcacaa gtttgcatgc acattaacaa cttacaagta gatctaaatc      2700
     gattttggga gttagattct gtgtcatctg tacacaatca cacaagtgag gagagatcct      2760
     gtgaacaaca ctttgtagat accacatatc gaaattgtga ggggcggttt gtggtaacta      2820
     ttccttttaa agagtcacca gacgtcctgg gtgattcata catgttagcc aagcagcgat      2880
     ttctatctgt tgaacgtcgt ttgggtagag atcttcgcct taaaaagcta tacgttgact      2940
     tcataaatga gtacatagag cttggacaca tgtctgaatc tactggacgc cagctcgact      3000
     cagcatgttc aaactattta ccacatcata gtgttctaaa ggaatcaaga actagtacca      3060
     aattaagggt agtttttgac gcttccgcca aaaccaagtc aggtaaatcc ttcaacgaca      3120
     tacagatggt tggtcccact atccaggatg atttactatc aatactactt cgatttcgtc      3180
     agcacaaaat tgttataagt gcggacatag agaaaatgta ccgacaaatt cttgttcacg      3240
     acagcaaccg tcctctacaa aaggtccttt ggagagccga accaactcat ctgttgaagg      3300
     agtacaccct taacaccgtt acgtacggca cagcatcagc accgttttta gccactaggt      3360
     gtttgcttca actggctgaa gagtgctcag atccgtcgac taagttttcc atagctcgtg      3420
     atttttatgt cgatgatttt ctgtccggtg gatcatctgt ttcagaaact ctagaaaagg      3480
     cctgtaatgt tgacggtatt ctacggtcag cgaagtacaa tcttcggaaa tggcggtcca      3540
     attccggtca ggtcctgcaa gcgcttggcg gtgaagctgg gcattctgac gttgttatcc      3600
     tgagcgacga cgagcaatcg aaaaccttgg ggcttcaatg gaaaactttg agtgatacgt      3660
     tttctttttc tattaattta aacatcactg aaaaggcaac taagcgtcac atgttgtcaa      3720
     tcatagcgca aatttttgat cctgttggtc tagtcgttcc atgcatagtg gaagccaaaa      3780
     ttatcatgca gcaactatgg ctggccaaat gttcttggga cgagcttgtt cctgcgcata      3840
     ttcagtatgc ttggaatgat ttccaaaata gtctgcacct tttaaatgag ttcaagatac      3900
     ctcggtgggt attgtgtgaa tctgcgtcac gtttacagct gcacatcttc gctgacgctt      3960
     ccgaaaaagc ttatggggcg tgtgtttatg ttcgcagtat ttcgagagat ggcgaggtca      4020
     caatacatct acttaccgct aaaagcaagg tagctccaat caaatccacc accataccgc      4080
     gacttgagct gtgtggtgcc ttgttgggtt cacggttgta ctcaaaggtt cgtcagtcac      4140
     tgaccttaca gtttgatgaa gttcactgtt ggtgtgattc cacaatcgtt ttgggatggc      4200
     tagccacttc gtcaaacgaa ttaaaaccat tcgttcgtca tcgcgtgtct gaaattcagg      4260
     atactgtagg aggggaggct tggaagtatg ttccgtcagc tgaaaacccc gcagacctgg      4320
     tttcgcgtgg tcttcgaact gacaagcttt tgtcgtcttc tttgtggtgg tcaggaccac      4380
     aatttcttac caaagataag tcgtcatggc cacaattccc tgaatcacat caaaatcatc      4440
     ctaagttacc agaaacgatt acgtcttgtc atgtttccca caatgtaatt gaaaattcta      4500
     ttagtgactt atggtcaaaa ttttcaaact tcaacaaaat acagcgtgtg acggcatatg      4560
     tcatgcgatt cacatctaaa tgcaataaaa aatctgttga gtttggttcg ttaacgtcaa      4620
     ctgaacttaa caattcttta aactttatat taaggcttag tcaaatggat tctttctctg      4680
     aagagtacca tttacttaaa tcaggcaaac aattgccagc caaaaacaaa ttattatctt      4740
     tgtcaccctt ttttgagaat tcttctaacc tcattcgtgt ggggggaaga ttaaataatt      4800
     cattttacga ttacaatatt aaacatccaa ttttgttatc cagttcacat ccgatttgca      4860
     ttcttttatt taaaatgttt catttgcgcc ttatgcatgc tgggcctcag cttctattag      4920
     ccactgttcg tcatcactac tatcccattg gtggtaggaa cttggcaaaa aaggtcacac      4980
     atcaatgcgt caaatgttgc agactcaagg ctaacaccat tcagcccatc atgggtaatc      5040
     ttcctaacca acgcttacat ttagaatttc cattcttaga cacaggtaca gattatgctg      5100
     gccccatcat gatagctgac cggaaaggta gagggtgtag actcatcaaa tgttttattt      5160
     gtgtgttcgt gtgtctagct acaagagcaa ttcacctcga gcttgtgtcg gaccttacaa      5220
     aggaagcctt cttagctgcg cttaatcgct ttattgctcg caggggaaag ccacgcaaca      5280
     tattttccga caacggcaca acgttcgtag gcgctttcaa tgagttggcc aaactgcttt      5340
     ctcaagactt aaatttaaat caaattgatc ctggcataaa cttttctttt atacctgcat      5400
     atactccaca cttcggtgga ttatgggagt ctgcagtcaa atccaccaaa catcatcttc      5460
     gacgggtctt gggcttaaca aacctaacct ttgaggagat ggctacctgt ttgatacaag      5520
     ttgaggctat cttgaattca agacccttaa ctccattgtc caacgatcct tccgacctca      5580
     ctcctttgac acctgctcac ttccttattg ggcgttctct aataatgctg cctcattcac      5640
     aggtccagaa cgccaacgtc aacagcttaa aacgttttca gcgtattgac cttttgaagc      5700
     aacacttctg gactcgtttc tcacacgagt acgttgtgtg gctacaggag aggacgaagt      5760
     ggtgccggtc atctggcgag ctcaaggagg gaaccatggt cgtcgtaaag gacaacaact      5820
     tacatcctct tatgtggctt ttaggacgca tcaaacgtgt tcttcctggc agagatggcg      5880
     tcgccagggt cgccgacatc ctcaccaaga agggtgtcat ccggcgcgcc tttaatacta      5940
     tctgcccgct gccggtcacc actgttgaag actcatcttc aaggggggga gta             5993
//
ID   BEL-17_SpEx-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-277
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6925-6925 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 277 BP; 57 A; 79 C; 65 G; 74 T; 2 other;
     tgttgaggca cctgtctcaa catcgcctcg ccgctcgcgc gccggcggca gtgamcgagg        60
     gacgcgcggg caagggggcc cgccggccga tmtacagtcc agcccgcagc tcgctatata       120
     acagtcagct gcggcacgct cggacacaca gctgcttcgc atttttgttt taactatata       180
     attgattccg tgcttattta cattttttat attgtattat acagtccact agtgagttcc       240
     tcattttaac tctgaccact agctatcgtc ggcaaca                                277
//
ID   BEL-17_TrNi-I repbase;    DNA;    INV; 5620 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5620
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1024-1024 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..5567
FT                 /product="BEL-17_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPDKTSDEKVSDLKKQRGIIKGRITQFKKFVDSFRGA
FT                 ILTPLQIEEFKIRIQAINELFSKFNVIESELESLLSDAELQTNLEYVESLE
FT                 SVYFTAMASANYFIIHGAETSSRTSDDNSFRKPINVKLPQIKLPIFDGAYD
FT                 NWLEFKHSYITMIHKRSDLDEIQKFHYLRSALTGGALQVISALEFSPANYI
FT                 HAWELLENRFHNDRLLVNNHVKALFNSATLKSESSMLIRKLIDTVLRNLRA
FT                 LNSLDEPTEKWDTLIIYLIVTKLDASSEREWENHKGAMSLGVKDKVKLEDL
FT                 LSFLRNRADMLDMINANHSKPKEVTHDKSENKHHNDNKRSSNRIHSYASTK
FT                 GKFNRYNNFKKDLPNCVFCNQGHALYTCIGFLNMSVSDRSKFVNEKKLCRN
FT                 CLRAGHLIDDCVFGPCRQCQGKHNSLLHFENSVNYACVRNESRGEASTTHT
FT                 QNATALHSLPDSNEILVCDKATNNFKLIHTVLLSTALVEVADNNNVFHTVR
FT                 ALLDSGSQNCFITEKLSKRINATYLKSSVHISGVGQYVTQSCHSCDISMRS
FT                 KVNDYYYKIRCIILPCITSSLPTINIESGYIRIPDNVQLADPTFNISSDID
FT                 LLIGADIFWDLLNSDKMRLPSGPYLQNSKLGWLLSGPIFARDAQTTHVQCH
FT                 FTQDIDKQLRLFWELESIPTSPRSVLTEDERRCEELFTNTYLREDNGRFSV
FT                 RIPLRDSPDTLGDSYTLAKKRFLNLERKLERSPEFKLMYSDFMREYHDLGH
FT                 MTKISACGHPNYYLPHHGVVKESSTTTKLRVVFDASAVTSSNKSLNDIQYT
FT                 GPALQNDIFSILLRFRQYKYVACADVEKCFRNVLIQRDQRSLQLILWRESP
FT                 TEPLDTYQLNTVTYGTASAPYLSMRCIRQLALECEDKVIARVISEDTFVDD
FT                 LITGDDDHHQLIRICQKTSEVLQSGCFPLRKWTFNSDTYQCESVEHFIGEH
FT                 SQTKTLGLGWHNTSDELYFVTNIDSNYSKLTKRVMLSILSQIYDPLGLLSP
FT                 VVIIPKLLLQKLWLSKIDWDTPVTLDIVKIWQNFVETLRYLKDIRIVRHVR
FT                 GAYTQYTELHIFSDASQDAYGACAYIRTYSDNSDVTVRLLCAKSKVAPVKS
FT                 ISIPRLELCGALIGAKLYKKIVDSLRLEFSKVYFWTDSTIVMGWLKMSPHL
FT                 LKTFVQNRVSEVNELTGDSVWLHVGSKDNPADLLSRGYNLDLLKDCDLWWN
FT                 GPSYLRNLDNYNNRCDITDVQNLPELKCKQTCLLNTEYGDLIDFEKYSSLS
FT                 KLKRTVAYILRFIDNVRMKMDKDSRRTGSLSVSECNAAQKMLIRLVQSKSF
FT                 PDVYNNLVNDIPLKRSCKQYSQVSSLNVFIDTDKIIRVGGRLSNSSNFNYD
FT                 KKHPVLLCSKHPFTVLLFRYEHLRLLHAGPQLLLASLRECWWPLNGRNLAR
FT                 KTVHGCVKCTRVKGKTLTPIMGNLPADRLEPGFPFIRTGVDYAGPVYILNR
FT                 KGRGAQLTKAYICVFVCFTTRAMHLELVTSLTSSDYILTLKRFISRRGKPN
FT                 VIFSDNGKNFVGAEKEFPLFLKREAENITNYATDNNIEFRFIPPYSPHFGG
FT                 LWESGVRSCKYHLRRIVGNARLTFEEFSTALAQIEAVLNSRPISPLSSDPS
FT                 DLTPLTPAHFLIGRPLTAPASSDDFTERPSLRLSRYERIEQLRQQFWRRWS
FT                 TEYISELQKRTKWKTQQDSIDIGSLVLVKDDKLPPLNWHLGRVVRVHPGRD
FT                 GVTRVADVRTASGIIRRAVAKICPLPLRPTSEDL"
XX
SQ   Sequence 5620 BP; 1649 A; 1067 C; 1216 G; 1688 T; 0 other;
     taatttggtc cttcgagccg gatcgcagca tacgaagaat acgagagacg ccgagttcga        60
     ccagccagtc gccatacttt ttaccgccaa aaagtttacg agagaaatag gcaacggttt       120
     ggtctgtgtt cccgtaatcc aattcctaat ttcgtgagtg ttaaagctgt gctttcgtat       180
     acgtgagtgt tttttcctat tcgaattcaa aatcgttgcg cggcgcgcgc ggcgcttcgc       240
     tggacgcttg cacgtgagta cctactttca aatttttcat atcgtattat tcgtaaaccg       300
     tcaatatgcc tgataaaact tccgacgaga aagtttctga tcttaagaaa caaagaggaa       360
     tcataaaagg ccgaattaca caatttaaaa aattcgtaga ttccttccga ggcgccattt       420
     tgacgccttt acaaatagaa gaatttaaaa tcagaataca agcaataaat gagttgtttt       480
     caaaatttaa cgtaatcgag agcgaactcg aatcactttt gtcggatgcg gaattgcaaa       540
     ctaatttaga gtatgtagaa tcattagagt cagtttattt tacggcaatg gctagtgcca       600
     attattttat cattcatggc gcggagacta gtagcaggac ttcggatgat aattcgtttc       660
     ggaaacctat taacgttaaa ttaccgcaga taaaattgcc tattttcgat ggagcgtatg       720
     acaattggct cgagtttaaa cattcttaca ttactatgat tcataaacgt tcggacttag       780
     acgagataca gaagttccat tatcttaggt cagcgctcac cggtggtgcc ttgcaggtga       840
     tcagtgcctt agagtttagt ccggctaact acattcatgc atgggagtta ttggaaaatc       900
     ggtttcacaa cgatagatta ttggttaata accacgtgaa agcgttattt aatagtgcga       960
     ccttgaaatc ggaatcctct atgctgatta gaaaattgat tgatactgtc ctacgtaatt      1020
     tacgagctct caattcccta gatgaaccca cggagaaatg ggatacactt attatctacc      1080
     ttatcgtaac taagctcgat gcgtcctcgg aacgcgagtg ggagaaccac aaaggcgcga      1140
     tgtctttagg cgtcaaggac aaggtcaagt tagaggattt actctcattc cttaggaacc      1200
     gtgctgacat gctcgacatg attaacgcga atcatagcaa gccgaaagaa gtaacacatg      1260
     ataagagtga aaacaaacat cacaacgata acaaacgtag ttcaaatcgt attcatagtt      1320
     atgcgtctac gaagggtaaa tttaatcgtt acaataattt taaaaaagat ttgcctaatt      1380
     gtgtattctg taatcaaggt cacgccctct atacgtgtat aggtttttta aatatgtcgg      1440
     taagtgatag gtcgaagttt gtcaacgaga agaaattgtg tcgaaattgc ttacgagcgg      1500
     gacatttaat tgacgattgc gtatttggtc cgtgcaggca gtgccaggga aaacataata      1560
     gtttattaca tttcgaaaat agcgtcaatt atgcgtgtgt gcgtaacgag tcgcgcggag      1620
     aggcgagcac tacgcacaca cagaacgcaa ctgcgttaca ttctttaccc gattcgaatg      1680
     aaattctcgt atgtgacaaa gctacgaata attttaagtt gatccacacg gtgttacttt      1740
     ccacggcgtt ggtggaagta gctgataata ataacgtgtt tcatacagtt cgcgcgcttt      1800
     tagatagcgg aagccagaac tgtttcatta cggagaaatt gtctaaacga attaatgcga      1860
     cttatttaaa gtcttcggta catatctctg gtgtgggaca gtatgtcaca cagtcgtgcc      1920
     attcatgcga tatttctatg cgatcaaaag taaacgatta ttattacaag attcgttgta      1980
     ttatcttgcc atgcataaca tccagtttgc ctacaataaa catcgaatca ggttatattc      2040
     gtattcccga taatgtacaa cttgcagatc ctacatttaa tattagttcg gatattgatt      2100
     tgctgatagg tgcagatata ttttgggacc ttttaaatag tgataaaatg cgtttaccga      2160
     gtggcccata cctacaaaat tctaaattag gttggttgct gtcaggtcct atattcgcaa      2220
     gggacgctca gacaactcat gttcagtgtc actttaccca agatattgac aagcaactta      2280
     gattattttg ggaactcgag agtataccta catcgcctcg ttcagttctt actgaggacg      2340
     aacggagatg cgaggaattg tttaccaata cgtatttacg cgaagataat ggtaggttct      2400
     cggttcggat accgctgcgt gattctccag acacactggg tgattcttac acgctcgcga      2460
     agaaacggtt tcttaactta gaacgtaaac ttgaacgttc acctgaattt aaacttatgt      2520
     atagtgactt tatgcgagag tatcatgatt taggtcacat gacaaaaatt agtgcttgtg      2580
     gtcatcctaa ttattatcta ccacaccacg gggtcgttaa agagagtagt acgaccacca      2640
     agttacgcgt tgtatttgac gctagtgctg tgactagctc aaacaaatca ttaaacgata      2700
     ttcagtacac ggggcccgcg ttacaaaacg atatattttc tattttgttg cgctttaggc      2760
     aatataagta tgtcgcgtgt gccgatgtag agaaatgttt tagaaatgta cttatccagc      2820
     gtgatcaaag atcgttacaa ctaatattgt ggcgcgaaag tcctacggaa ccattagata      2880
     cgtatcagct taatacagtg acgtacggaa ctgcgtccgc tccgtattta agtatgcgtt      2940
     gtattagaca gttagcgtta gaatgcgagg ataaagttat tgcaagagtt atctccgaag      3000
     atacttttgt agacgatctt atcactggtg atgatgatca tcatcaatta attagaattt      3060
     gtcagaagac ttcagaagtc ttgcaatctg gttgttttcc tctgcgcaag tggacattta      3120
     attcagacac ttatcagtgc gaatccgttg aacattttat aggtgaacat tctcaaacga      3180
     aaacacttgg attaggttgg cacaacacta gtgatgaact ttatttcgta acgaatatcg      3240
     atagtaatta ttcaaaatta actaaacgcg taatgttatc cattttatca cagatttatg      3300
     atccgttagg tcttctttct cctgtagtta ttattccaaa attattatta caaaaactat      3360
     ggttaagtaa gatcgattgg gacactcctg ttactttaga tattgttaag atttggcaga      3420
     attttgttga aacattaaga tatttgaaag atattcgtat tgttcgtcac gttcgtggag      3480
     cgtatactca gtatacagag cttcatattt tttccgatgc atcgcaagac gcgtacggtg      3540
     cgtgcgcgta tatacgtacc tatagtgata attccgacgt aacagtgcgt ttgctgtgtg      3600
     ccaagagtaa ggttgcacct gtaaagtcga ttagtattcc gcgtttggaa ctttgtggcg      3660
     ctctaattgg agctaaattg tataagaaaa tagttgattc tttgagatta gaatttagta      3720
     aagtatactt ttggactgat agtacgatag tcatgggttg gcttaaaatg tcaccacatt      3780
     tacttaaaac ttttgttcag aatcgagtga gcgaggtcaa tgaactcacg ggcgattccg      3840
     tgtggttaca tgtaggtagt aaggacaacc cagctgattt gctgtcgcgg ggttataact      3900
     tagatttatt aaaggattgc gatttgtggt ggaacggtcc ttcatattta cggaacttag      3960
     ataattataa taacagatgc gatattacgg acgttcagaa tttaccggaa ttaaaatgta      4020
     aacaaacgtg tttattgaac acagaatacg gagacttaat tgattttgag aaatacagtt      4080
     cactttctaa acttaaacga acagttgcat atatacttag atttatagat aacgtacgca      4140
     tgaagatgga taaggacagc cgtcgaaccg gttccttatc agtgagcgaa tgcaatgccg      4200
     ctcaaaaaat gctaataaga ttagttcaga gtaaatcatt tccagatgtt tataataatt      4260
     tagttaatga tattccttta aagcgaagtt gtaaacagta tagtcaggtt tcaagtttga      4320
     atgtttttat tgatacggat aaaataatta gagtcggtgg aagattgagt aattcgtcta      4380
     attttaacta cgataaaaaa catcctgttt tattgtgcag caaacatcct ttcactgttc      4440
     ttttatttcg atatgaacat ttacggttac tacatgcggg tcctcaactg cttttagctt      4500
     ctttgcgtga atgttggtgg ccattaaacg ggagaaactt agccagaaag actgtgcatg      4560
     ggtgcgtcaa atgtacgcgg gtgaaaggta agacgctgac acctatcatg ggtaacttac      4620
     cggctgatcg cttagagcct ggttttccat ttattcgaac aggcgtagat tatgcggggc      4680
     cagtttatat tttaaatcgt aaaggcagag gagctcagtt aaccaaagcc tacatttgtg      4740
     tatttgtttg tttcacgacg cgagctatgc atttggaact tgttactagt cttacttcga      4800
     gtgattatat tttaacttta aaacgcttca ttagtagacg aggtaaacca aacgttatct      4860
     tttccgataa cggtaaaaat tttgtggggg ctgaaaagga gtttcctttg tttcttaaga      4920
     gagaagcgga gaatattaca aattacgcga cggataataa cattgagttc cgatttattc      4980
     ctccgtattc tccacacttt ggcggtttgt gggagagtgg ggtacgctcg tgcaagtatc      5040
     atctgcgacg catagtaggt aacgcgagac taactttcga ggagtttagc acagctttgg      5100
     cacaaatcga ggccgtcctc aactcccgtc cgatttcacc tctatcctct gatccttctg      5160
     acctcactcc tcttacccct gcccacttcc tcatcggccg accgttgacc gcaccagcat      5220
     catcggacga cttcaccgag cggccaagtt tgaggctgtc ccgctacgag agaatagaac      5280
     agcttcgcca gcagttttgg agacgctggt ctacagagta catctctgaa ctacaaaaac      5340
     gtactaaatg gaagacccaa caagacagca tcgatatagg cagcctagta cttgtcaagg      5400
     atgacaagct gccacccctg aattggcatc tggggcgagt ggtacgggtt catcctggaa      5460
     gagacggagt aactcgagtc gccgacgtcc gtactgcttc gggcatcatt cgtcgggctg      5520
     tggcaaagat atgtccgctg ccgctgcgac cgacgagcga agatttgtaa catcacttgc      5580
     gataccatgt tggaagccgc agcttccaag gccggggcca                            5620
//
ID   BEL-17_TrNi-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-17_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-288
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1052-1052 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 288 BP; 69 A; 66 C; 59 G; 94 T; 0 other;
     tgttcgcgcc atctattgac gctagtgtgg actaaacatt ttgtgcgtag tgtcagtggt        60
     aatgtgtcgc catctagcga caaagtgtat cagactatcg attggcgcct tttattcgtg       120
     tttggcgcgc gacgcccccg ccatccttct tcttcttcaa cccttcttgc aagcaacacc       180
     gattgtcatg ttgtatcgat aatttcagtt ttaatatata taagttttat aaaagcacag       240
     ttaaacgttt tatttgggaa tctggacgag aaccaccgat cctgcaca                    288
//
ID   BEL-180_AA-I repbase;    DNA;    INV; 5606 BP.
XX
AC   supercont1.7;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-180_AA_;
KW   BEL-180_AA-LTR; BEL-180_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5606
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.7; Positions 3241817 3247422.
XX
CC   Positions [4653-5237] - Integrase core
CC   'ATCTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           258..5606
FT                 /product="BEL-180_AA-I_1p"
FT                 /translation="MTEETPHPKRSKTPRKILDVLSGTPSSIYVSVQQQKQ
FT                 EQAKKEMAKQLERILDRREFAKERMFRIREGLEKNVVNIHWFKLQLETLRQ
FT                 CNEELQRTFIEICDLVPRNQRDEHRENHFRSEELHNELFVYIQTEIAKLNA
FT                 AEEEKQRSTMNVLAPAFVPQQPVVMNNSMPHLPVPLPTFDGSLENWYSFKC
FT                 MFKTIMNRYPHESPAIKLYHLKNSLTGSAAGKIDQDVINNNDYDSAWRMLE
FT                 ETYEDERLIIDTHIDALLTLPKMTSENGTELRNLLDNCLKHVDALKNRSLP
FT                 VEGLSEMILINVVAKRLDKETRKLWESQIPSDDLPTYPDMVDFLRERSRIL
FT                 QKMRSYTEAASSIPSKQRGKQSDLKLTPGRNFAQTSQSNEWCACCNGEHVI
FT                 YKCDVFESLTVNDRYAKVKQAGLCFNCLRRGHRTGDCNSERTCKTCKRKHH
FT                 SLLHEGKSTVNQLQVNQADAEAPAVAEEHREDAEEIPGSVNCAKTTMPKQV
FT                 LLSTAEVLVLDSNNRSVLCRALLDSGSDSNLISKALATTLNIPMESVNIPI
FT                 TGVNNAETRIKHKLRTKILSRVSSFDAVLDFLVVPTVTANLPTMKVDIHSW
FT                 SIPTNIALADPLFHIPDEIQMIIGAELFFELLKNGRMNLAEGSPMLIETDL
FT                 GWVVSGPVKVNQNGPSRSVCQLNITDEQLNRTLVKFWEIESCNEASPLTPA
FT                 EQAIEKHYEETFSRDETGRYIVKLPFNENKSQLGDSLEMARTRFKRLLRSF
FT                 ANNEKKRRYTEFMTEYQTLGHMIQVQHNPEDCYFLPHHAVYKESSSTTKIR
FT                 VVFDASAKTTSGISLNDALAVGPTVQNDLVTILLRFCSYPVVLTADIPKMY
FT                 RQVRIHENDRKYQRILWLDTNNEIATFELTTVTYGCASAPYLATRTLIQLA
FT                 KDEASELPLGSKVIEENSYIDDFLTGGNSEQEVIAIYQQLTELLRRGGFGI
FT                 HKFCTNSEVVRKIIPPELQETLFDFEDADINSVIKTLGVIWNPNDDYFTFN
FT                 VSPLHGKVTNAIPTKRSVLSAIGQLFDPCGYLGPVTTTAKLLMQDLWRLKL
FT                 SWDDELPEEQYDLWTTFQEQLPLMNELRKKRCVITRGAAAVELHGFSDASK
FT                 RAYGAVLYTKCISPDGSVDVELVCSKSRVAPLKPMTIPRLELCGTLLLARL
FT                 VEKTAAAMKIPFSNVTLYTDSQVCLSWFAKSPLALNQFVANRVATVHELTQ
FT                 DYKWCYVRSQENPADIISRGMLPAELLTEEKWFKGASALWQPNCSANEDTI
FT                 CLDDDELPELKPTVVATSVRQKPQIDLTRMSSFRRLQRAWAYVLRFIKNVR
FT                 QKKRDTSELQTQEITKATQIIMMLVQRETFYDLLHALKEGKKTLKQYRGLA
FT                 PFIDKDGLIRVGGRLKYSSIPYDGKHQIMLPEKHHVTQILVRQLHTDHFHV
FT                 GQRGLLSIVRERYWPIKVKTLIKQLVSKCYVCFRQNPTQVDQFMGDLPDYR
FT                 ITPSPVFSNTGVDYAGPVYLKETGRKKTTYKAYIAVFICLATKAIHIELVS
FT                 NLTTENFIAALQRFISRRGMVTNMYSDNGTTFVGANHELAELRKLFEDQTH
FT                 QRQLNDFCISKGIEWHFIPPRSPHFGGIWEAGVKSIKHHLKRVVGETKLTF
FT                 EEMTTFLAQCEAILNSRPLIPVSDDPNDIEVLTPSHFLIGRSAVSIPEPSY
FT                 AEEKIGRLNRWQHVQLMKEHFWKRWSSEYLHYLQSRPKWHSETAKIDIGDV
FT                 VVLKDENAPPHQWRMGRIVATHPGHDGIVRVVTVRADTKEFRRAVSKVCFL
FT                 PKVDPLDSTGGV"
XX
SQ   Sequence 5606 BP; 1647 A; 1298 C; 1338 G; 1323 T; 0 other;
     ttttggtcca ttcgagccag atgaacattc tgtgatgggt ttttcgttaa tttgtggtga        60
     aattccggtc gaattcgcga gagttcattg atttccaccg tgtggaaaat ccgatcggca       120
     acgacgccga acgacgcaac gaacagtgtg tttgtgcgtg cacagaacgt gttcaaacgt       180
     gttgaacgca gagtgaaaaa caagtgaaag acttcgaaca aactttaacc gtttgtattc       240
     agtgaagtgt tggtctaatg actgaagaaa ctcctcatcc gaaacggagt aaaaccccga       300
     ggaaaatcct ggatgtttta agcggcacac cgtcatcaat ttacgtgtcg gtgcagcagc       360
     aaaaacaaga gcaagctaaa aaggaaatgg cgaaacaact ggaacgaatc ttggatcgcc       420
     gcgaatttgc gaaggaaagg atgttccgga tccgcgaggg attggagaag aacgtcgtca       480
     atattcattg gttcaagcta caactcgaga cgcttcgtca gtgcaacgaa gaactgcagc       540
     gaacgttcat cgaaatatgc gacctggtac cacgaaatca gcgagatgaa cacagggaaa       600
     accatttccg gtctgaggag ctgcacaatg agctctttgt gtacatccaa acagaaatcg       660
     cgaagttgaa tgcggcggaa gaggaaaaac aacgcagcac gatgaatgta ttagcccctg       720
     ctttcgtgcc gcagcagcct gtggtaatga acaactcgat gcctcacttg ccagtaccat       780
     tgccgacatt cgacggcagc ctcgagaatt ggtattcatt caagtgtatg ttcaaaacca       840
     taatgaacag gtatccacat gaatccccag caataaaact gtaccacttg aagaactcgc       900
     ttactggaag tgctgctggt aaaatcgacc aagacgtaat caacaacaac gactacgatt       960
     cagcgtggag aatgcttgag gaaacctacg aggacgagcg actaattatc gatacacaca      1020
     tagacgctct actcacgtta cccaagatga cgagtgagaa cggcactgag ttgcggaact      1080
     tgcttgataa ttgtttgaaa catgtcgacg ctttgaagaa ccgatcgtta ccagttgaag      1140
     gactctccga gatgatccta atcaatgtag tggcgaaacg cttggataag gaaaccagga      1200
     aattgtggga atcacaaata ccatcggatg acctaccaac gtacccggat atggttgact      1260
     tccttcgaga gcgaagtcgc atcctacaga agatgagaag ttacaccgaa gcagcgtcat      1320
     caattccatc gaaacagaga ggcaaacaat ccgacctgaa acttactcca ggcagaaact      1380
     ttgcgcaaac ttcccaatcc aacgaatggt gtgcatgttg caacggtgag catgtaatct      1440
     acaagtgcga cgtatttgaa agccttacag tgaacgaccg ctacgctaaa gtaaagcaag      1500
     ccggcctctg ctttaattgc ctgcgacgtg gtcaccgtac cggtgattgc aattcggaga      1560
     ggacctgcaa aacatgcaag cgtaaacatc acagtctcct acatgaaggc aaatcgacag      1620
     tcaatcaact tcaagtaaac caagctgacg cagaagcacc agcagttgca gaagaacatc      1680
     gtgaggatgc tgaagaaata ccaggatcag ttaactgtgc caagacgacc atgccgaaac      1740
     aagttctcct ttcgacagca gaagtgcttg ttctggattc caacaacaga agtgtactat      1800
     gccgagcttt gttggattct ggttcggact caaatctcat cagcaaggcg ttggcaacga      1860
     cgctgaacat ccccatggag agcgtgaaca ttccgataac cggagttaac aacgctgaga      1920
     ctcgaatcaa gcataagctc cgtaccaaga tcctgtcacg tgtcagttca tttgatgcgg      1980
     ttctggactt cttggtcgta ccgacagtta ctgctaattt gccgacaatg aaggtggata      2040
     tccattcctg gtcaataccc actaacatag ccttggcaga tccattgttc catattcctg      2100
     atgaaattca aatgatcatc ggcgctgaac tgtttttcga gcttctcaaa aacggacgga      2160
     tgaatctagc tgaagggtcg cctatgttga tcgagaccga cttaggatgg gttgtcagcg      2220
     ggccagtcaa ggtaaaccaa aacggtccct ctcgtagcgt ctgccagttg aatattacgg      2280
     atgagcaatt gaatcgcact cttgtcaaat tttgggaaat tgagagttgc aacgaagcat      2340
     caccattaac gccagcggaa caagccatcg aaaagcacta tgaggaaaca ttttcccgag      2400
     atgaaacagg tcggtacatc gtcaaacttc ctttcaatga aaacaagagt caacttggcg      2460
     actccttgga aatggctagg acacgattca aacggctact acgatcgttt gccaacaacg      2520
     agaagaaaag gcgctacact gagttcatga ccgaatacca gacactgggg catatgattc      2580
     aagttcagca caatcccgag gattgctact ttcttccgca ccacgcagtt tacaaggaat      2640
     cgagttctac tacaaaaatc cgtgtagtat tcgacgcatc ggcgaaaaca acgtctggca      2700
     tttcattgaa cgacgcccta gctgtgggcc caacagttca aaacgatctc gtcacaatac      2760
     tgctgcggtt ctgttcctat cctgtagtcc tgacagcaga catcccgaag atgtaccgtc      2820
     aggtacgtat tcatgaaaac gatcgaaaat atcagcgtat cctgtggctt gacaccaata      2880
     atgaaatagc cacgtttgaa ttaacaacgg ttacgtacgg ttgcgccagt gcaccctatc      2940
     tggcaacgcg cacgttgata caattggcga aagatgaagc aagcgaatta ccacttggat      3000
     ccaaagtcat tgaagaaaat agctacatcg atgacttcct caccggaggt aacagtgagc      3060
     aagaggtgat tgcaatctac cagcaactca ctgagctact gcgacgagga ggctttggaa      3120
     tccataaatt ttgcaccaac agcgaggtgg tccgtaaaat cattccgcct gaactccaag      3180
     aaacactttt cgacttcgag gacgccgaca tcaacagcgt tatcaaaact cttggcgtca      3240
     tttggaatcc gaacgacgac tatttcacct ttaatgtgag tcctcttcac ggcaaggtaa      3300
     cgaatgcaat accaaccaaa cgcagcgtgc tttctgctat cggacagctt ttcgatccat      3360
     gtggctatct tggtcctgtg acaacgacgg caaaattgct gatgcaagat ttgtggagat      3420
     tgaagttgag ctgggacgat gaactaccgg aggagcaata cgacctgtgg actacattcc      3480
     aggagcagct gccgttgatg aacgagctgc ggaagaagcg atgtgttatt acacgcggag      3540
     cggcggcagt agagctccac ggattttcgg acgcttccaa gcgtgcgtat ggagcagttt      3600
     tgtacactaa gtgtatttct ccagatggat cagtggacgt cgaactcgtg tgcagcaaat      3660
     caagagtggc tcccttgaag ccaatgacca ttcctcggct ggaattgtgc ggaacacttc      3720
     ttctggcacg tctggttgaa aaaacagctg ctgcaatgaa aattcccttt tccaatgtga      3780
     cactttacac agactcacaa gtatgtttga gctggtttgc aaaatcaccg cttgctttga      3840
     accagtttgt tgcaaatcgt gtcgccactg tgcacgaatt gacgcaggac tacaagtggt      3900
     gctatgtgcg atctcaggaa aacccagcag atattatttc acgtggtatg ctaccagcgg      3960
     aactgctaac agaagaaaag tggttcaaag gtgcatcggc tttgtggcag ccaaattgtt      4020
     cagctaatga ggacaccatt tgtttggatg acgacgaatt gccggaattg aaaccgacag      4080
     tagtcgccac ctccgtgcga caaaaacctc aaatcgattt gacacgtatg agcagctttc      4140
     gacgactaca acgagcttgg gcttatgtgt tgcggttcat aaaaaatgta cgtcagaaga      4200
     aacgtgacac ttccgagctt caaacgcaag aaatcaccaa ggcaacccaa attatcatga      4260
     tgcttgtgca gagggaaacg ttttacgacc tgctccacgc cctgaaagaa ggtaagaaga      4320
     ctttgaagca atatcgtggt ttggctccat tcatcgacaa ggatggatta attagggttg      4380
     gcggacgtct taaatactct tcgatcccct acgacggcaa acaccaaatc atgttacctg      4440
     aaaagcatca cgtgacccaa atacttgtgc gccaactcca taccgatcat ttccatgtcg      4500
     ggcagcgtgg tttgctgtct atcgtacggg aacggtattg gccgataaaa gtgaagacgc      4560
     ttattaaaca gcttgtctcc aaatgctacg tttgctttcg gcaaaatcca acgcaggttg      4620
     accaattcat gggcgactta ccagactatc ggattacacc atcacctgta ttttcgaaca      4680
     ccggggttga ttacgctgga ccggtatatc tcaaagaaac tggtagaaag aaaacaacgt      4740
     acaaggcata catcgcagtg tttatttgct tggccacgaa ggccatccat attgaattgg      4800
     tttccaattt gaccacagaa aattttatcg ctgccctgca acggtttatc agcagacgtg      4860
     gtatggtcac caatatgtat tccgataatg ggacgacgtt tgtgggagcg aatcatgagt      4920
     tggccgagct acgcaagttg ttcgaggacc agacacatca acggcaactg aacgatttct      4980
     gcatttcgaa aggaatcgaa tggcatttta tcccgccacg tagtccccac ttcggcggta      5040
     tatgggaggc tggagtaaaa tcaattaagc accatttgaa gcgtgtcgtc ggtgaaacga      5100
     agttgacctt tgaagaaatg actacttttt tggcgcagtg tgaagcaatc ctgaacagtc      5160
     gaccgttaat tcctgtttcg gacgatccga atgacatcga agttttgact ccatcgcact      5220
     tcctcatcgg gagatctgct gtgagcattc cggaaccgtc atatgcagaa gagaagatag      5280
     gccgattgaa ccgttggcaa cacgtacaat tgatgaagga acatttttgg aagcgctggt      5340
     cgagtgagta tttgcattat ttacagtcca gaccaaagtg gcacagcgaa actgcaaaga      5400
     tcgatattgg cgatgtcgtc gttttgaagg atgaaaacgc acccccacat caatggcgaa      5460
     tgggacgcat cgtggcaacg caccccggac atgatggcat tgtgcgagtc gtcacagtac      5520
     gtgcagatac caaggagttc cgtagagctg tatccaaggt ttgcttcctt ccaaaggttg      5580
     atccgttgga ctcaacgggg ggagta                                           5606
//
ID   BEL-180_AA-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   supercont1.7;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-180_AA_;
KW   BEL-180_AA-I; BEL-180_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-194
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.7; Positions 3241623 3241816.
XX
SQ   Sequence 194 BP; 62 A; 42 C; 42 G; 48 T; 0 other;
     tgatgacgcg tgtagagtac catcaggcga ccccccgtcg ttcttgcgct tggcgcgagc        60
     atcgtgtgga gagaaaaaga aaaagtacag tcaacatcag tttgaataaa aacgtaaaac       120
     ggatcgcacg cgtttcattc gattcatttg caaattgtct gaaaaatcca attcctaaac       180
     atttcggtta aaca                                                         194
//
ID   BEL-181_AA-I repbase;    DNA;    INV; 6367 BP.
XX
AC   supercont1.4;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-181_AA_;
KW   BEL-181_AA-LTR; BEL-181_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6367
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.4; Positions 2631139 2637505.
XX
CC   Positions [5418-5975] - Integrase core
CC   'GAGAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1115..4915
FT                 /product="BEL-181_AA-I_1p"
FT                 /translation="MSQRFPIPVAQPQEESLHQPPVVWRFSLPAPAWQPPH
FT                 SSGFQHAPEPLISHQTRFESGVPDHHQSSTSELVVPRLCQPNPVESPQLDP
FT                 VYSVRRVSSAEQQPQARDAQVPAWGPTPQQLAARQVMAKELPIFSGNPEDW
FT                 PLFISSYHNTTQACGYSQAENLARLQRCLKGHALESVRSRLLLPQAVPHVI
FT                 ATLETLYGRPELLIHTLLQKVRGVPAPKHDRLDTLIGFGMAVQNLCDHLEA
FT                 GGQEAHLNNPMLLFELMEKLPANLKLDWSLYKQRCGDVNLRVFAQYMSVLV
FT                 RAATDVTLHFGPRPLQQKWDARTEKSGKDKNFCGAHSEENLATFRKEESVD
FT                 KESSSFSTACLVCKDTDHRVKECAQFAKKSLDERWKAVQQFGLCRNCLGAH
FT                 GRRPCKVFKRCGVDGCQMRHHTLLHFRQEENEDKATTNHHFAGKTTLFRIV
FT                 PVTLFGNNRAISVYAFLDDGSERTLVEEEVVRELGVTGKHIPLCLQWTANV
FT                 KRTESDSQRVALQISGANGTKHELIDVRTVSRLELPRQSMNHSKLAEAFPY
FT                 LRGLPIQDYDQALPRILIGTDNAHVTATLKLREGQPGEPVAAKTRLGWTIY
FT                 GMNSTDKVEHRAQTFHICDSRDEDTLHDMLVQFFSVESLGIATEACPESDE
FT                 VQRAKKILQATTKRVGKRFETGLLWKFDNIEFPDSYPMAVRRLQCLERRIQ
FT                 SDPVIGESIKRQLKEYQTKGYIHKASEEELKEADPRRVWYLPLGVALNPKK
FT                 PSKVRIFCDAAAKVDGLSLNAMLLKGPDLLNTLFGVLFGFREKRIAICADL
FT                 MEMFHQIQIRKEDRHAQRLLWREDPTKTPEVYLMDVATFGATCSPCSAQFV
FT                 KNTNATEHAKEYPAAADAIHRKHYVDDYLDSADNVEEAIKIAEEVRHVHSL
FT                 GGFHLRNWLSNSKEVLTRVGENGQATEKNLQMDEGSSAERVLGLFWRPEPD
FT                 DFTFSTELVKHVEQPTKRQALSIVMSPFDPLGFLSFFLIHGKILIQDVWRA
FT                 KTLWDQTIPEKLWERWLQWTEYFQRLDQISIPRCYFPRHSVQDFISLQLHV
FT                 FVDASEDAFACVAYFRAEFKDDIEVALVAGKSKVAPLKALSIPRLELMAAV
FT                 IGARLKKTIINEHSLRIDQAIIWSDSKTVLAWINSDHRSYRQFVACRIGEI
FT                 LSKTRVSQWRWIPSKENVADDATKWGKGPSLSPSSRWFRGPDFLYLSEKHW
FT                 PVDESGTLRTSEELRACMMHREVVLHHHVKWERFSQWKRLCRAIAYVHRYV
FT                 QNLRRR"
FT   CDS           4932..6365
FT                 /product="BEL-181_AA-I_2p"
FT                 /translation="MIGPLTQTELASAETTIWRWVQSEEFPDEVAILSKKH
FT                 GQYPERLMKLDRTSKLRKLSPFMDETGVIRMESRIAAATFASFDTRFPIVL
FT                 PKEHLVTGLLIGWYHRKYLHGNGETVVNEVRQRFHVPSLRMVVRKEKKKCV
FT                 WCKIKLAVPAIPRMAPLPAARLKAFERPFSYIGVDYFGPIAVRVNRTSAKR
FT                 WVALFTCLTIRAVHLEIVHSLSAESCKMAFRRFVARRGSPVEVYSDRGTNF
FT                 VGSSNELQQEMNAIDQQLAETFTNAHTKWIFNPPAAPHFGGAWERLVRSVK
FT                 TALSAMYTSRVPNEETLATLMAEAEGVVNSRPLTFIPLEEEQQEALTPNHF
FT                 LLLSSNGVVQTTKTLADSREACRNQWNLCRVMVDAFWRRWVREYLPDLTRR
FT                 TKWFDDVAAIQPGDLVIIVNDSVRNGWTRGRVTEILKGMDGRTRQAVVKTA
FT                 AGLVRRPIAKLARLDILKGKTEPDIPEQLTGRG"
XX
SQ   Sequence 6367 BP; 1814 A; 1460 C; 1642 G; 1451 T; 0 other;
     aaatctaaaa gatatttgcc attatgccgg taagtacgcg cagtgcttct ggaagaaaca        60
     cccgatgcca ggcatgtaac gagtcggata cgtcgcggat ggtttcttgc agtcattgcg       120
     ttctatggtg gcactacgag tgcgtgagcg tgaatgagtc catcgccgaa ccggatcgca       180
     cattcgtttg ccccaggtgt cagaggccgt caccaatctt tccatctaat ccagatcctc       240
     tatcggcaaa tagcaataaa aggctcacca gtttgtctgg aatttcatcc acctccagcg       300
     tgaaagctcg gagggctcgc ctccagctgg agaaactcga ggcacagaaa gctctgatgg       360
     agaaacgttt ggagcaagca cgtcgagaac agcaaatcag gcatgagcag gagaaattga       420
     tgcaggaagc tgagatggag aaagtacgtt tgcagatgga ggaatccatc ctggaggaaa       480
     cattccgggc tagggaggaa gagttgctgg acgaagagca agacgaaaaa agctgtacgt       540
     ctgaacagag cagtatcagc aaagtacggc agtggcaaca ccagcaaggt ttctctgcac       600
     aagggacgac gatcacagaa ccgacgccga gtggcacggc ggctactgaa gtgaaacaag       660
     cagccgctat tgggttagaa cgtaatatta tagcggccga cggtacgtca tttaatcagt       720
     attccgataa tctagctgta agaagaatca ttgataggac aggcagtata gtagggccta       780
     gcgtagagtt aaatgcacct tctcgcacag aagttctggg cgcacagtca ttagaaatgc       840
     gtcatcaaat ttacctgaaa agttaacaca aagtaaggaa aattgtctcc gaaaaagtac       900
     gtacggtttg cctgtcaaac aacattatcc tcttcctccg gaaaacgtag acctgtctcc       960
     taaatctctt aatcccatcc atcctactct cggtaataat caatcgggta cagtctccgg      1020
     caacctaagt gataacgtta atgtgaacac caatgatcca gtgtaccaaa ccggtatagg      1080
     acgaagtacc gctcagtttc cagtacatag tgatatgtct caacgatttc cgattcctgt      1140
     agctcaaccg caggaagaat ctctgcatca accaccggtc gtatggcgat ttagcctacc      1200
     agcgccggct tggcaaccgc cgcactcatc tggatttcaa catgcacctg aacctctgat      1260
     atcgcaccaa acgcgtttcg aatccggagt cccagatcat catcaatcat cgacttcgga      1320
     attagtcgta ccgaggttgt gtcaaccgaa tcctgttgaa tcaccgcaac tcgatccagt      1380
     gtattccgta aggcgggtgt cttcagcaga acagcaacct caggcaagag acgcacaagt      1440
     accagcatgg ggaccaacac cacagcagct agctgcacgg caagtgatgg cgaaggagtt      1500
     gccgatcttt tctggcaatc ccgaggactg gccactattc atcagctctt accacaatac      1560
     cacacaagct tgcgggtatt cacaggctga gaatcttgca aggttgcagc gatgtctaaa      1620
     agggcatgca cttgaatcgg tacgcagtcg tcttctgctt ccacaggctg ttccacacgt      1680
     cattgctaca ttggaaacgt tgtacggtcg cccggaacta ctgatccata cacttttgca      1740
     gaaagttcga ggagttccag caccgaaaca cgacaggttg gatacgttga taggatttgg      1800
     aatggcagtt cagaatcttt gtgaccacct ggaagccgga ggtcaagaag cacatcttaa      1860
     taacccaatg ctgctcttcg aattgatgga aaagctgccc gcgaacctga aattggattg      1920
     gtcactatat aagcagcgat gtggggatgt aaatcttcgc gtattcgctc agtatatgtc      1980
     tgtcctggtg cgtgcagcga ctgatgtgac attacacttt ggtcctcggc cattgcagca      2040
     aaaatgggat gcgagaaccg aaaaaagtgg caaggataaa aacttctgtg gtgcccactc      2100
     tgaagagaat cttgctactt tcagaaaaga agaatcggtg gacaaagaat caagctcgtt      2160
     tagcacggcc tgtctggtat gcaaagacac cgatcatcga gtgaaggagt gcgcccagtt      2220
     cgccaaaaaa agcttggatg aacgatggaa ggctgtacag caatttggat tatgccgcaa      2280
     ttgcttgggc gcgcatggaa ggcgaccgtg caaggtcttt aagcgatgtg gcgttgatgg      2340
     atgtcagatg cgacatcata cgctattgca ctttaggcaa gaagaaaatg aagacaaagc      2400
     caccaccaac catcatttcg cggggaagac aaccctgttc cgaattgttc cggtaacgct      2460
     gtttgggaat aatcgggcaa tctcagtgta tgcgtttcta gacgatggat cggaacgaac      2520
     tctggtggaa gaagaggtgg ttcgtgaact gggagttaca ggcaagcaca ttccactatg      2580
     cctgcaatgg acggcgaatg ttaagaggac ggaaagcgat tcacaacgcg tagcgttgca      2640
     aatctctggt gctaatggaa cgaaacacga gttaatagac gtacgaacgg tcagcagatt      2700
     ggagttgcct agacagtcaa tgaaccattc aaaacttgct gaagcgttcc cgtacttacg      2760
     aggattgcct atacaagact acgaccaagc actaccgcgt atcttgattg gaaccgataa      2820
     cgcacatgtt accgcaactc tcaaactacg agaaggacaa ccgggagaac cagtggcagc      2880
     aaagacacga ttaggatgga ccatctacgg gatgaactcg accgataagg tggaacatcg      2940
     tgcacaaaca ttccatatct gtgacagtcg ggatgaagat acgcttcacg atatgctggt      3000
     gcagttcttt agcgtagaaa gcttgggaat agccacagaa gcgtgtcccg aatcagatga      3060
     agttcagcgg gccaagaaga ttcttcaagc gacaaccaaa cgggtgggca agcggttcga      3120
     gacagggcta ctctggaagt tcgacaacat agaattccca gacagctatc cgatggcggt      3180
     caggcgacta caatgtttgg agcgacggat tcagagcgat ccagtgatag gagaaagcat      3240
     aaagcggcag ctgaaggaat accaaacaaa aggatacatt cacaaagcat ccgaagaaga      3300
     actgaaggaa gcggatcctc ggcgtgtgtg gtatttaccc ctcggcgtgg cgttaaatcc      3360
     gaaaaaacca tctaaagttc gtatcttctg cgatgcagca gcaaaggtag acggtctttc      3420
     gttaaacgca atgcttctga aaggaccaga tctacttaac acattgtttg gagttctctt      3480
     cggtttccgt gaaaagcgta ttgccatttg cgctgattta atggaaatgt ttcatcaaat      3540
     ccaaatacga aaggaagatc ggcacgccca acggctgctt tggcgtgagg acccaacaaa      3600
     aactccggag gtctacctga tggatgttgc cacattcggc gccacatgtt ccccttgctc      3660
     cgcacaattt gttaagaaca cgaatgccac ggaacatgcc aaggagtacc cagctgcagc      3720
     agatgccatt catcgcaaac actacgtgga tgattatctg gacagtgcgg acaacgttga      3780
     agaggcgatt aagattgcag aggaggtgcg acacgtgcac tcacttggcg gtttccattt      3840
     gcggaattgg ctgtcaaact ccaaagaggt tctcacacgg gtcggggaga acggacaagc      3900
     tactgagaag aatttacaaa tggatgaagg aagctcggct gaacgtgttc ttgggttgtt      3960
     ttggaggccg gagcctgatg atttcacatt ctccacggaa ttagtgaaac atgtggagca      4020
     gccgactaaa cgtcaagcat taagcatagt tatgagcccg ttcgatcctt taggattcct      4080
     atcgtttttt ctgatacatg gtaaaatcct aattcaagac gtgtggcgag ctaaaaccct      4140
     gtgggatcaa acgataccgg agaaactttg ggaacggtgg ttgcagtgga cagagtattt      4200
     tcaacgactg gatcaaatta gtattccacg ctgctacttt ccacgccatt cggtccagga      4260
     ctttatatcg ctacagctac atgtctttgt agatgcgagt gaggatgcct ttgcgtgtgt      4320
     ggcttacttc cgggcagagt ttaaagatga catcgaggta gcactagtag ccggaaaatc      4380
     caaagtggcc ccgctcaaag ctttatctat accgagatta gaactgatgg ccgcggtgat      4440
     cggagcccgt ctaaaaaaga ccataatcaa cgaacactca ttgcgcatcg accaagccat      4500
     tatatggagt gattctaaaa cggtactcgc atggatcaat tctgatcatc gaagctaccg      4560
     tcaattcgtc gcctgtcgta taggagagat actctcgaaa acccgtgtaa gtcagtggcg      4620
     ctggatacct tcaaaggaaa acgtggcgga cgatgcaaca aaatggggca aagggccaag      4680
     tctatcccca agcagtcgtt ggttcagagg gccagatttt ttgtaccttt ccgagaaaca      4740
     ttggccagtt gatgaatctg gaacgctgcg gaccagtgaa gaactccgag cctgtatgat      4800
     gcatcgtgaa gtggtgctac atcatcatgt gaaatgggag cgtttttcgc agtggaaacg      4860
     cttgtgccgt gcgatagcat atgtgcatcg ctacgtacaa aacttgcgac ggaggtgaat      4920
     aaaacagaca gatgattgga ccgctgactc aaaccgaatt ggcatcggcc gagacaacta      4980
     tctggcgctg ggttcaaagt gaggagttcc cggacgaagt agccattctt tccaaaaaac      5040
     atggacaata tccggagcga ctgatgaaac tggatcgaac tagcaaactt cgtaaactgt      5100
     cgccgttcat ggacgagact ggtgtaatac gcatggaaag tcgaattgcg gcagcaactt      5160
     tcgcgtcttt cgacactcgg tttccaattg tcttgccgaa agagcatctt gtgactggac      5220
     tgttgattgg atggtatcac cgaaaatatc ttcatgggaa tggagagacc gtcgtcaacg      5280
     aggttaggca acgcttccat gtgcctagtc ttcgtatggt agttcgcaaa gagaagaaga      5340
     agtgtgtatg gtgcaagata aagctagcgg tcccagcgat tcctcggatg gctccacttc      5400
     ctgcagccag actaaaggca ttcgagcgtc cattttcata tattggagtg gattattttg      5460
     ggccgattgc cgtacgtgtg aatcgaacaa gtgccaaaag atgggtagct ttgttcactt      5520
     gtcttaccat cagagccgtt cacttggaaa tcgtccattc actctccgca gaatcctgca      5580
     aaatggcttt tcgaagattt gtagcacgaa gaggatcacc ggtagaggtc tacagcgatc      5640
     gaggaaccaa ctttgtggga tccagtaacg agttgcaaca ggagatgaac gctattgatc      5700
     aacagcttgc cgaaaccttc accaacgcac acaccaaatg gatattcaac ccgccagccg      5760
     ctcctcactt tggcggagca tgggagcgct tagtaagatc tgtgaagaca gcgctatcgg      5820
     ctatgtacac atccagagtt ccaaacgaag agacgctggc aactttgatg gcagaagctg      5880
     agggagtagt aaactcgcga ccacttactt tcattccgtt ggaggaggag caacaggagg      5940
     cattaactcc taaccatttt ctcctgctta gttccaacgg agtagtccaa actacaaaaa      6000
     cactagcgga ctctagggaa gcctgtcgaa accagtggaa cctatgtaga gttatggttg      6060
     acgcattctg gcgaagatgg gtccgagaat acctgccgga tttgacacgt cgcaccaagt      6120
     ggttcgacga tgtagccgct attcaaccag gtgatttggt gatcatcgtg aatgatagcg      6180
     tacgcaacgg atggacccga ggccgtgtta ccgaaatact taaaggaatg gacggtcgca      6240
     ctcgtcaagc tgtggtgaag acagctgcgg gactagttcg acgaccgatt gctaagttgg      6300
     cgcgactaga tatactgaag ggtaagactg aaccggacat accggagcag cttacgggtc      6360
     ggggaga                                                                6367
//
ID   BEL-181_AA-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   supercont1.4;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-181_AA_;
KW   BEL-181_AA-I; BEL-181_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.4; Positions 2630542 2631138.
XX
SQ   Sequence 597 BP; 207 A; 101 C; 101 G; 188 T; 0 other;
     tgttacggtg gatagcaacg tccctttgga tacccctcgg tctgacacga acgtagtgcg        60
     ctagcttttg acatctgtca ttactcacga atctaggtag acgtatcaaa gaatgaaaat       120
     agatatcaac acctctatga atcagttgta gctagcgaga agttatttca acgtttaatt       180
     tagtttaaaa gcagttcttg gcaaataata ttgaatttcc tttattgtaa gtagtaatat       240
     taaaaatatg aatattttga attcaattcc gaatcttatg aagatttttg agcacctata       300
     aagacagcat aattctgcaa gttaacgagc ctggttgtaa cctaaaagta tatattgtac       360
     acctattaaa tgaccagcaa ttaatagatt gaattttagg gcgaaactca gcagaataac       420
     taaaactata ttttttgttg gccacaagtg ggatagcgga tcaaatatgt aagtttactg       480
     cttaattatc ctaaaaatgt aaccaagaat taattaaatg aacttagctt ttagcgctta       540
     tatcaccaac atcatcggtg ttattgctta aaagaagccg aataccctac gccaaca          597
//
ID   BEL-182_AA-I repbase;    DNA;    INV; 6552 BP.
XX
AC   AAGE02029203;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-182_AA_;
KW   BEL-182_AA-LTR; BEL-182_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6552
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029203; Positions   16776   23327.
XX
CC   Positions [5555-6133] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..6552
FT                 /product="BEL-182_AA-I_1p"
FT                 /translation="MDMDGHVGGSARGESSCTDCQRPDTAEDMVQCDQCDV
FT                 WKHYTCAGVNESIANRSFVCGNCTAQQSAVDQGAVDQNASDVISVRSGSSR
FT                 SSSTSAFSVCLSQMVERQKLERARIELELQRRHLNEQQQLIDKVLDGEETA
FT                 SHRSGGLPVGAKGGVNNELAPPASKALPTPPPSGALPTRAAGPSKQSTVKT
FT                 TDSIEPLMVTIPLSVLDPSTVESLKLRENPLELRNRIEHCEFRANPTPEQE
FT                 KNSSMMVSIPFSALDSGTVQSLKAKKDPQTALRELRNLVEQCENRANPTPE
FT                 EMADLQVQVERCRKLLERFQTRAEPCKAARQQETSYPEKLQPLNPDANSTR
FT                 IDKQTGAIPKATRNLPVVVENDQVLSQAGAVGGIDTTKEIWPLKKPVSRTC
FT                 WAPVSQSIAAPETRPNDAGPSGKRQALNNLLNINEYTSKNCPTTNNPMTRE
FT                 QPPFDARPGETHTLPTNSHEQLRESFARSGDATLFNSELNQNSTRLLTRNL
FT                 PTRAVDSSLPPRHSTNYQANPNPDPVRPTQQQLATRQSLAKDLPRFSGDPA
FT                 EWPIFISNYRYTTEACGYTNGENMLRLQRCLFGPALETVRSRLVLPAAVPQ
FT                 VIETLRLRFGRPELLINALLRRVREIPAPKSDKLEGLIDFGMAVQALCDHI
FT                 EAANERAHLSNPSLLQELVAKLPADQRMMWAGYKRGFQNVDLRTFGDYMAA
FT                 VVQDATSVTTFEPEVKRINARDRPKHKGFINSHAIETTERNGDSSYASKET
FT                 PKQIICAHCNKSGHRLRECNSFIQLKLDDRWRRIRELKLCQSCLFSHGRRA
FT                 CRIRKTCEIDGCQYSHHKLLHSSGGPPKPSAPQLQVAENHTHRQSTSSTLF
FT                 RIIPVTLHGDSGSISTFAFLDEGSDMTLVENDLITSLGVKGTPLPLCLRWT
FT                 GNTSRIERGSQQVTIEIAGIGQKRRHKLLNARTVSNLGLPRQTFRMEEAEK
FT                 RYQHLKGIPVCSYENVVPRILIGIDNLRLALPLKVREGEGTAPVAVKTRLG
FT                 WCVYGPQVRNNRESFSFHICECSCDDTLHEVVKEFFAIEGAGAGPVDIPQT
FT                 QEEERALTTMEQTTRRIGNRFETGLIWKQDDVEFPDSCSMAVRRLECLERR
FT                 MDRNPELKENLHRQISEYESKGYAHKASKAEMEAADPRRVWYLPVGAVINP
FT                 KKPGKVRVIWDAAAKVEGVSLNSQLLKGPDQLSSLPAVLFRFRQYGVAVSS
FT                 DIQEMFHQIRIREQDKHSQRFLWRTNPSDVPTIYLMDVATFGSTCSPASAQ
FT                 FVKNLNAEQHRERYPEAASAIIDDHYVDDYLASFGSEKEAAKVARDVRYVH
FT                 GNGGFKLHNWRSNSTRVLEQLDEVQPKADKLLNLVDGGKSERVLGMLWSPS
FT                 ADELSFSTQMTEEMQTLIQTQTRPTKRQVLRCVMTLFDPLGLLSPFIIHGK
FT                 VLIQDLWREGTEWDEQISDSVNEKWKRWVRMIVYIAEIRIPRCYFHQATKE
FT                 TYKKSEYHVFVDASGEAYCCAIYLRTINEKGEPQCCLVAAKSKVAPIKPWS
FT                 IPKLELQGCVLGVRWSKFVKENHSLPVSKMVFWCDATVALGWIKADPKNYR
FT                 PFVSFRVGEILEHTTTNQWRWVPSKDNPADEATKWGSGPYFDPESKWFHGP
FT                 NFLRLPESEWPRPKERVIAPTEEMRASILHHCSFIPVIDFERFSSWVRLQR
FT                 ATAYVLRFLHNLAKKQPILTGQLSQAELQVAEEVVFKLVQFECYPDEIAAL
FT                 SNKAPNEIDQKAIGKESSIYRLMPMLDNVGVLRERGRISAASDVCYDVRHP
FT                 IILPRNHRVTELLVHRFHQQYRHGNAETVVNEIRQRYTIPRLRLVVKQVTR
FT                 DCTLCKVRRARPAIPVMAPLPLARLAHHERAFTYTGVDYFGPLLVKLGRSN
FT                 VKRWIALFTCLTVRAVHLEVAYTMSTESCISCVRRFVCRRGPPAEFFSDNG
FT                 TNFQGADRVLRHQISQGLSNTFTSTNTRWNFIPPGAPHMGGAWERLVRSVK
FT                 AAMAEAYSEGKLDDEGLQTLVVEAESLVNSRPLTYLPLDSEEAEALTPNHF
FT                 LMLSSSGVKFCAEGGSATAHNQSSELVRREILGRSWELIQRQLNVFWRRWL
FT                 VEYLPVIRRQSKWFAQTRNLEVGDLVMVAEPTKRSGWERGRIVRTIPNTDG
FT                 QHRQAVVKIGQKSVVRPASRLAQLDLKVYSETPEDSGPHRGET"
XX
SQ   Sequence 6552 BP; 1736 A; 1726 C; 1762 G; 1328 T; 0 other;
     cgcccgactc cctcgataat cttcaaaaat tcgttgctac atggacatgg atggccacgt        60
     gggtggatct gcaagaggag aatccagctg cacggattgt caacgaccgg acacggcgga       120
     ggacatggtc cagtgtgacc aatgcgacgt gtggaagcac tacacgtgtg ccggggtcaa       180
     cgagagcatc gctaaccgat cgttcgtgtg cggcaactgt accgcccagc agagcgcggt       240
     cgaccaaggt gcagtggacc agaacgctag tgacgtgata tcggtgcgca gtggatctag       300
     ccgctcaagt tcgacgtcag cgttctccgt ctgcctgagc cagatggtgg agcggcagaa       360
     gctggagcga gcacgtatcg aattagagct gcaacgacgt catctcaacg agcaacagca       420
     gctgatcgat aaagtgctag acggagaaga aacagcgagt catcgcagtg gaggtctacc       480
     tgttggggcg aagggtggtg tgaacaacga gctagcacct cctgcatcga aggcacttcc       540
     aacaccaccc ccttctggcg ctctcccaac aagggccgct ggtccatcaa aacaatctac       600
     cgtcaaaaca actgattcca tcgaaccact tatggtgacg attccccttt ctgtgctgga       660
     tccaagcacg gtggaatcat tgaaattacg agaaaatccc ctggaactca ggaaccggat       720
     tgagcattgc gagtttcgcg ccaatccaac acctgaacag gagaagaatt catcgatgat       780
     ggtgtcaatt cccttttctg ccttggattc gggcacagtg caatctttaa aagcaaaaaa       840
     ggatccccaa actgccctgc gggagctcag gaacctggtt gagcagtgcg agaatcgcgc       900
     caacccaaca cctgaagaga tggcagattt gcaggtgcaa gtagaacggt gccggaaact       960
     cctggaaaga ttccagacaa gagcggaacc gtgcaaagca gctcgacaac aggagacgag      1020
     ctacccagaa aaacttcagc ccttaaatcc agatgccaac tcgacacgca tcgacaagca      1080
     gaccggcgcc attccgaaag cgactcggaa tttgcccgtg gtcgtggaaa acgatcaggt      1140
     tctttcccag gctggcgcag tgggtggaat cgatactacg aaagagatct ggcccctgaa      1200
     gaagccggta agccgaactt gctgggcccc ggtaagtcaa tccatcgcag cacccgaaac      1260
     gcgtccgaac gatgcgggac cctcaggtaa gcgtcaagct ttgaataacc ttttaaatat      1320
     aaacgaatac acctccaaaa attgccccac gaccaataat ccaatgaccc gagagcagcc      1380
     gccttttgat gcgcgcccgg gagaaacgca tacacttccc acaaactctc acgagcagct      1440
     gcgagaatct ttcgcgcgct ctggtgatgc gactttgttc aatagcgaat tgaatcaaaa      1500
     ttcaacccgt ttactaacgc gtaacctccc cacgcgtgcg gttgattcgt ctctgccccc      1560
     tcgtcattca acaaactacc aagccaatcc aaacccagat ccagtgcgcc ccacacagca      1620
     gcagttagca acaaggcagt ccctggctaa ggatcttcct cgcttctctg gcgacccagc      1680
     tgaatggccg attttcattt ccaactaccg ctacaccaca gaagcctgcg gctacacgaa      1740
     cggcgaaaac atgcttcgac tccagcgttg cttattcggg ccggcattgg aaacggtgcg      1800
     cagtcggttg gtgctgccag cagcagtgcc acaggttatc gagacgcttc gtttgcggtt      1860
     cggacgtcca gagttgctga tcaatgcgct gctacgaaga gtgcgtgaaa ttccagctcc      1920
     gaagtccgac aagctggaag gactcatcga cttcgggatg gcggtacaag cattgtgcga      1980
     ccacatcgaa gctgcgaatg aacgcgctca cctttccaat ccatcacttc tccaagaact      2040
     cgtcgccaag ttgcccgcgg atcaacggat gatgtgggca gggtacaaac gaggcttcca      2100
     gaacgtcgac ttaagaacgt ttggagatta tatggcagcc gttgtacagg atgcaaccag      2160
     cgtaacgaca tttgaaccag aggtgaagcg gatcaacgct cgtgatcgtc cgaagcacaa      2220
     ggggttcatc aattcccatg cgatagagac aactgaaaga aatggagatt cgtcttacgc      2280
     ttccaaggaa acgccgaagc agatcatctg tgctcactgc aacaaaagtg ggcaccgatt      2340
     gcgagagtgc aattcgttca ttcaactgaa gctcgacgat cgctggcgac ggattcgtga      2400
     gctaaagctg tgtcaaagct gtctgtttag ccacggtcgt agagcatgcc gcattcgaaa      2460
     gacttgcgaa atcgacggtt gccagtatag ccaccataag cttcttcact cttctggagg      2520
     acctccaaag ccatcggctc cacagcttca ggtggcggaa aaccataccc accgtcaatc      2580
     tacctcctcg acattgtttc ggatcatccc agtgacgctg cacggagata gcgggtcgat      2640
     cagcaccttc gcctttcttg acgaagggtc cgacatgaca ttggtggaga atgacttgat      2700
     tacgtcgttg ggggtcaaag gtaccccgct tccgctatgc ctaaggtgga ctgggaacac      2760
     ctcacgaatc gaaaggggat cgcaacaggt cacaattgag atcgctggaa tcgggcagaa      2820
     aaggcgacac aagctactga acgcaagaac agtcagcaac cttggactgc cccgccaaac      2880
     tttccgaatg gaagaagcgg agaaaaggta ccagcacctg aagggcatcc cggtctgcag      2940
     ctacgagaac gtagttccca ggattctgat cggtatcgac aacctgcgcc tagcgctgcc      3000
     gttgaaggta cgggaaggag aaggtacagc gccagtggcg gtgaaaacca ggctgggttg      3060
     gtgcgtctat ggacctcaag tacgcaacaa tcgcgaatcc ttcagtttcc atatatgtga      3120
     atgctcctgc gacgataccc tgcacgaagt agtgaaagag ttcttcgcta ttgaaggagc      3180
     tggcgcaggt ccggtggata ttccacagac acaggaggaa gaacgagcgc taaccaccat      3240
     ggagcaaacg actcgaagaa ttgggaatcg tttcgaaacg ggattgattt ggaagcaaga      3300
     tgatgtggaa ttcccagaca gctgttctat ggccgtgcga cgactggaat gcctagaacg      3360
     ccgaatggac cgcaatccgg aactgaagga gaatctccat cggcaaatct ccgagtatga      3420
     atcgaagggc tatgctcaca aagcttcaaa agcggaaatg gaagcagccg atccgaggag      3480
     agtatggtac cttccggtcg gagcggtaat caaccccaag aaaccaggaa aagttcgggt      3540
     catctgggac gccgctgcca aggttgaagg cgtatcccta aacagtcaac ttctgaaagg      3600
     tcccgatcag ctttcctctc ttccggcggt tctttttcgc tttcgccaat acggagtggc      3660
     agtcagctcg gacatccagg agatgtttca tcaaatccga atccgagagc aggataaaca      3720
     ttctcagcgt ttcttgtggc gtaccaatcc gtccgatgta ccgaccattt acctgatgga      3780
     cgtcgcaaca ttcgggagca cctgctcccc agcttccgca caattcgtca aaaatttaaa      3840
     cgctgaacaa catcgcgagc ggtatcctga ggcggcgagt gctatcattg acgaccacta      3900
     cgtcgacgac tatttggcga gtttcggatc cgagaaagaa gcagcaaagg tagcccgaga      3960
     tgtacgatac gtacacggca acggtggctt caagctgcac aactggcgtt cgaacagcac      4020
     tagggtactg gaacagctgg acgaagtgca gcccaaagct gacaagctgc tgaacctagt      4080
     cgacggtggg aagtccgaga gagtgcttgg aatgctgtgg agtccgtcgg ccgatgaact      4140
     gagcttctcc actcagatga ccgaagagat gcagacactg atccaaaccc aaacgcgacc      4200
     gaccaaaagg caagtgctac ggtgcgtcat gacgttgttt gaccctttgg ggttgctctc      4260
     accgttcatc attcacggca aagtcctgat acaggactta tggcgagaag gcacggagtg      4320
     ggacgaacaa ataagcgata gtgtcaacga gaagtggaag agatgggtga gaatgatcgt      4380
     gtacatcgcg gaaatacgga tccccagatg ctacttccac caagccacta aggaaaccta      4440
     caaaaaatcg gagtaccacg tgttcgtcga cgctagcggg gaggcgtatt gctgcgcaat      4500
     ttatctacgc acgatcaacg aaaaaggaga accgcaatgt tgcctggtcg ccgccaaatc      4560
     gaaagtggct ccgataaaac catggtcgat ccccaaactt gagctccagg gatgtgttct      4620
     cggggttcgc tggtcgaaat ttgtcaagga gaatcatagt ttgcccgttt caaagatggt      4680
     cttctggtgt gacgccacag tggcactggg ctggatcaaa gctgacccca agaactatcg      4740
     accatttgta tccttcagag taggcgagat tctggagcac acaacgacaa accagtggcg      4800
     ctgggtacca tcaaaggata atccagctga tgaagcaaca aaatggggta gcggaccgta      4860
     tttcgatcca gaaagcaagt ggttccatgg acccaacttc cttcgtctgc cagaaagcga      4920
     gtggccgcgg cccaaagagc gggtgatcgc ccctaccgaa gaaatgcgtg catcaatcct      4980
     tcatcattgt tcgttcatac ccgtcatcga ctttgaacgg ttttcttcct gggttcgact      5040
     gcaacgagcg acggcatacg tccttcgatt cctgcataat ttggccaaga agcagccgat      5100
     attgactgga caactctcgc aagctgaact ccaggtagct gaagaagttg ttttcaaact      5160
     ggtgcaattc gaatgttacc cagacgagat cgcggcactt tcgaacaagg cgccaaacga      5220
     aatcgatcaa aaggctatcg ggaaagagag ctcaatttac cgactgatgc cgatgttgga      5280
     taacgtcggt gtactgcgtg agcgtggccg aataagcgct gcctcagacg tctgctacga      5340
     cgtgcggcat ccgatcatcc ttccacgaaa ccatcgagta acggagctgc tcgtacaccg      5400
     attccatcag caataccgcc acgggaatgc cgagacagtg gttaatgaga tccgtcaacg      5460
     atacactata ccgagactcc ggctggttgt caagcaagtg acccgcgact gcacattatg      5520
     taaagtccgg cgagcacgac cagcaattcc agtgatggct cctcttccac ttgcgcgcct      5580
     agcccaccac gagcgagcat tcacctacac aggggttgac tacttcgggc cattgctggt      5640
     aaagctgggc cgctccaatg ttaaacggtg gatcgctttg tttacgtgtt taacagtgcg      5700
     cgccgtccat ctcgaggtcg cctatacgat gtcaacagaa tcctgcattt cctgtgtccg      5760
     tcggttcgtg tgccgtcgag gtccacccgc tgaattcttc agcgataacg gaacaaactt      5820
     tcaaggcgcc gaccgggtat tgcgacacca gattagccag ggactgtcca acacgttcac      5880
     cagcacaaac acaagatgga acttcatccc acctggagcg ccacacatgg gaggagcgtg      5940
     ggaacgcttg gtacgatcgg tgaaggctgc aatggccgaa gcgtactccg agggaaaatt      6000
     agatgacgag gggctgcaga cactggtcgt ggaggcggag agcctagtaa attcaaggcc      6060
     tctgacgtat ttacccttgg attctgagga agcggaggcg ctcacaccca atcatttctt      6120
     gatgctcagc tcgagtgggg tgaaattttg tgctgaagga ggttctgcta ccgcccataa      6180
     ccagtccagt gaactcgtcc gccgggaaat actggggaga tcctgggaac tgatccagcg      6240
     tcagttgaac gtattttgga gacgctggtt agtggaatac ctgccagtga ttcgtcggca      6300
     gtcgaagtgg ttcgcgcaaa cccggaatct ggaagtggga gacctggtaa tggtagcgga      6360
     gcctacgaag cgaagcggat gggaacgagg acgaatcgtc cgcacaattc caaatacaga      6420
     cggccagcat cgacaggctg tcgtaaagat tggacagaag agcgtagtgc gaccggcatc      6480
     gcggttggcg cagcttgacc tcaaggttta cagtgagact ccggaggact ccggacctca      6540
     ccggggggag ac                                                          6552
//
ID   BEL-182_AA-LTR repbase;    DNA;    INV; 654 BP.
XX
AC   AAGE02029203;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-182_AA_;
KW   BEL-182_AA-I; BEL-182_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-654
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029203; Positions   16122   16775.
XX
SQ   Sequence 654 BP; 219 A; 124 C; 147 G; 164 T; 0 other;
     tgtcggcgca ggagtcggca agctggcaac actgccaatc aacaatgctg aagggcaggc        60
     gacagctgtc aaagcgccgc ttcatcacga gtgacagatg tcactacgga ggggacgaac       120
     cgtcagatgc tgcttccggt cgtccatttc gaagccagtg ctaaacgtgc gtagttgcaa       180
     attagatagc tgtagtaaaa gtgaattatt taggcagtga aaattaaatt gagtgaattt       240
     attaaactag ttaaagtgaa tttattaaaa ggggactgct aattggtcct gagacaaatt       300
     cgcccggaat catcggtccg agaatccaac tctgtgaagt gagtctatag gtccagatcc       360
     ggtgatgttc ggtaatccct aggtccgtcc gcaaattccg ctaatcctga aaagagaaaa       420
     aaagtaagaa aataatagaa atagaattaa aagaaataac taaaattaat aatttaggtc       480
     gtagaccatc gaaacaactg agattctgcc aaagggcgtg aagagagaaa aaggtcaccg       540
     aattgtaagt gaatttaacc ttacctgcaa catgtgtact taccctaatt tgttttatag       600
     tttgaagcgc tgcaatacat acttgcttac aaaaccggtc atacttttaa tcca             654
//
ID   BEL-183_AA-I repbase;    DNA;    INV; 6072 BP.
XX
AC   AAGE02026169;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-183_AA_;
KW   BEL-183_AA-LTR; BEL-183_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6072
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026169; Positions   13943    7872.
XX
CC   Positions [5121-5681] - Integrase core
CC   'AAACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(30..4577,4581..6038)
FT                 /product="BEL-183_AA-I_1p"
FT                 /translation="MSSREAYGSGKSVKVSKKGKSSKSKVDEVVDGGNVSI
FT                 VVTGVQGDTDADRTLAGRTCKSCRGPDTDEMVQCDKCDKWHHFGCVGVTEE
FT                 VADHSWSCSKCVSAKWAQRSGSTSSKILQPSGGARSSMEAQNPRTSCGLNE
FT                 TDQRSSDPMKSTYKGQHRPGDNDAKTSVALSDLSSSSSRRSSRTLLKLQML
FT                 KLEEEQKLAKEFLERKYALLQEAASDISSKTSSKASSKTNSSMSRVRDWVH
FT                 GDNTHRREAGMLAWPDVFEPQRHSTQNPTTLACVNNLGAQRNQQYPFRHDQ
FT                 LTIGRTFSMRAMSSGATESADGMVRGFQETSRQQLPVPSAVGGPYVTENGP
FT                 TRPSDYRREPRLGVEYDEAHPLTHKQLAARQAISKELPTFSGKPEEWPIFL
FT                 SSFTNTTAMCGFTDAENAVRLQKSLTGKAYDAVKSSLMHPSNVRSVLATLR
FT                 MRFGQPEAIVHSLIAKITALPPLKEDKLEMIMDFAVEVQNFCAIVDACELE
FT                 EHMYNVSLLHQLVSRLPPSIKLDWARYRQALPRVNLATFGNWVYSLAEAAS
FT                 TVTIPNIPETKFDRTEMRQAKKSTGFINAHLEPNEAEPKPLVENAGKSSTE
FT                 CLVCKSGCEAIRKCKQFLELSRDSRWAVVRDFNLCRRCLGKHVGGCKAQAC
FT                 GKNGCTRMHHELLHNDSHIRKDAASMIDKTQQDKPGTSSTQHECNTHRSNV
FT                 NTSLFRYLPVTLQGKNGCIQTFAFLDEGSKLTLMDQDLADELQLEGVGSPL
FT                 YLRWTGGTERCEDDSRIITVSIAGSFNGAKMFKLDGVRTVKELQLPRQSLD
FT                 AEHMQKQYPYLRGLPIESYKHARPQILIGLKHAHVSLVLQCREGKLEQPIA
FT                 IKTRLGWTVCGGSDGDNSPNMVHYSFHIGSRDDRSDEDLHQAMKDYFAIDS
FT                 LGVVKPSETLLSSEDQRSCRMLETLTTFKGDRYETGLLWRYDDIRLPNSRS
FT                 MALRRYHLLEKRMAKDPDLAEALNQRIAEYITKGYIRQLTKDEETQYVSRS
FT                 WYLPVFPVFNPNKPGKLRIVWDAAATIFGVSLNSALLKGPDQLCSLFSILL
FT                 QFREHSIGLTGDIREMFHQIKIREQDQPCQRFFWKDESGETAVFEMCVMTF
FT                 GACCSPSSAQFVKNLNAERFVGQYPQAVEAIIKRHYVDDMLASVKTEEEAI
FT                 RLANEVKHIHSQGGFEIRNWVSNSQTVLRSLGENDAKTKSLDLSAEVATEK
FT                 VLGLWWCTETDTFTYKVCWSRYDESLLEGRRRPSKREVLRVLMSIFDPLGL
FT                 IAHFLIYLKVLLQEIWRSGAQWDDEINDVLFLKWQIWLRVLPEVENVQVSR
FT                 CYYLKDSPDNEIELHTFVDASENGYAAVSYLRTSNDGVECTLITAKTRVAP
FT                 LKFQSIPRLELQAAVLGARLARTIAESLSIRTTRRCFWTDSRDVLCWINSD
FT                 HRRYTQFVAHRVSELLDTTEANEWRWVPTKENVADDATKWQGRPDLTTDSR
FT                 WFNGPQFLRTSESNWPQQAPIHTSTQEEIRPHLVAHISTASPVLNVRDYSK
FT                 QRLLNVVSFLFLFSANCRRKAQNQPNRTGSLAMEEIRAAENYLIQLAQRDN
FT                 YAEEIASLSQGKPIPKNSPLYKSTPFIDKSGIIRMRGRTANCPFITYEVKN
FT                 PIILPRDHHVTTLIITHYHTKYHHLNQETVINELRQKFTISRLRVCCAKIR
FT                 RDCQRCKNDRAVPNTPVMADLPDARLAAYARPFTHVGIDYFGPMEVAVGRR
FT                 VEKRWGMLATCMTTRAVHIEVAHSLSTDSCIIAIRNMIARRGAPRHIYCDR
FT                 GTNFVGTSNELGRVMHELDNESIMSEFVDSGTSWSFNPPSAPHMGGSWERL
FT                 IRSVKCSLKALNLPRRPSDEVLHNALLEIENTINSRPLTHVPIEDNAAPAL
FT                 TPNHILLGSSNGVKPLTILNDSATNVRQCWRFSQIIANQFWKRWISEYLPD
FT                 ITKRTKWYNSNTLSIEIGDVVVIVDPKLPRNCWPKGRVIATRPGRDGEVRS
FT                 ATVRTAAGVYERPVVKLAVLEVRREAE"
XX
SQ   Sequence 6072 BP; 1743 A; 1402 C; 1503 G; 1424 T; 0 other;
     tcttataata ttcgtttaca tcttcggaaa tgtcaagtcg tgaagcgtac ggttctggta        60
     agagtgtgaa ggtgtcgaag aaaggaaaga gctcgaaatc gaaagtggat gaagtggtcg       120
     atggtggtaa tgtgtcgata gtggtcacgg gagttcaagg agacacggat gccgatcgaa       180
     cattggccgg ccggacttgt aaatcgtgca gaggtccaga caccgatgaa atggttcagt       240
     gcgataagtg cgacaaatgg catcactttg gctgcgttgg agtcacggag gaggtagcgg       300
     atcatagctg gagttgctca aagtgcgtat cggcaaaatg ggctcagcgt tcaggatcta       360
     cttccagtaa aatacttcaa ccgagtggtg gtgcaaggag cagcatggaa gcacaaaacc       420
     cacggacgtc ttgtggacta aacgaaaccg atcaacgaag ttctgatcca atgaagtcta       480
     catataaggg gcaacatcga cctggagata atgatgctaa gaccagtgtg gcattaagcg       540
     atttgtcgtc ctcatcgtcc cgcagatcgt caagaacact cctcaagtta caaatgctga       600
     agctggagga ggaacaaaaa ttggcgaagg agtttttgga gcggaagtat gcccttctac       660
     aggaggcagc aagcgatatc agttccaaga caagttctaa agcaagttcg aagactaatt       720
     ctagcatgag ccgagtacgc gattgggtac atggtgacaa cacccatcga cgagaggctg       780
     gtatgttagc ttggccggat gtcttcgaac cccaacggca ttctacgcag aatcctacaa       840
     cgttagcgtg tgtgaataac ttgggagcac agagaaatca acagtatcca tttaggcatg       900
     accaattgac tattgggcga acgttttcaa tgcgagcaat gtcatccggt gcaacagaat       960
     cggccgatgg aatggtgcga ggctttcagg aaacttcacg tcaacagctt cctgttccaa      1020
     gcgctgtagg aggtccatac gttaccgaga atgggccaac gcgaccatcg gattacagaa      1080
     gagagccacg acttggggta gaatacgatg aagcgcaccc tcttactcat aagcagctag      1140
     cagctcggca agccatatca aaggagctgc caaccttctc aggaaaacct gaagagtggc      1200
     caatcttctt atcgtccttt acgaacacaa cagcaatgtg tggatttacg gatgccgaga      1260
     acgcagtccg acttcaaaaa agtttgacag gaaaggcata cgatgcagtg aaaagtagtt      1320
     taatgcatcc gtccaacgtg agaagtgtac tcgctacact ccgtatgaga tttggacagc      1380
     cggaagcaat tgttcactcg ctgatagcga aaattaccgc attgccgccg ttgaaagaag      1440
     ataagctaga aatgataatg gatttcgcag tggaggttca gaacttttgc gctatagtgg      1500
     acgcgtgcga gctagaggag catatgtata acgtatcgct attgcatcaa ctcgtgagca      1560
     gactgccacc gtctatcaag ttggactggg ccagatatcg acaagcactt ccgagggtta      1620
     acctagccac ttttggaaac tgggtttatt ctctggcaga agcagctagt acagtgacca      1680
     ttccaaatat cccagaaacc aagttcgatc ggactgagat gcgacaagcc aaaaaaagta      1740
     ctggatttat taacgcacat ttggagccga atgaagcgga accgaagcca ttggtggaga      1800
     atgctgggaa aagctcgact gagtgtctag tttgtaagtc cggttgtgaa gcaattagga      1860
     aatgcaagca atttttagag ctgtctagag attctcgatg ggctgttgtc cgagatttca      1920
     acctatgtcg gcgctgtctt gggaaacacg tcggtggatg taaagctcaa gcttgcggaa      1980
     agaatggttg tacgagaatg catcacgaac tgctccataa cgatagtcat atcaggaaag      2040
     atgcagcttc aatgatcgac aaaactcagc aagataaacc gggaacgagc tcaactcagc      2100
     acgaatgcaa cactcaccgc tccaatgtca acacttccct attccgatac ctgcctgtaa      2160
     cactccaagg aaaaaacggg tgcattcaga cgttcgcctt cctggatgag ggttctaaat      2220
     taacactcat ggaccaagac ctcgcggatg agcttcaatt ggaaggggtt ggtagtccac      2280
     tataccttcg atggactggc ggtaccgagc gttgtgaaga tgattcacgt attatcacag      2340
     tttcgatagc aggatccttc aacggtgcaa aaatgttcaa attggacggc gtgcgaacgg      2400
     tgaaagaact tcagctgcca cgacaatctc tggatgccga acatatgcag aaacagtatc      2460
     cttacttgcg aggcctaccc atcgaatcat acaaacacgc acgtccacaa attttgattg      2520
     ggttgaagca cgcccatgta agtcttgtac tgcagtgtcg ggaaggaaag ttagaacaac      2580
     ccatagctat aaagacacga ctaggctgga ctgtatgtgg tggaagcgac ggcgacaact      2640
     cgccgaacat ggtacactac tcgttccaca taggctcacg agacgatcga tcggatgaag      2700
     acctgcatca ggccatgaaa gattattttg ccatcgacag tttgggtgta gtgaagccta      2760
     gtgaaactct cctttcttct gaagaccaac gaagttgtag aatgctggaa acgctaacca      2820
     ctttcaaggg cgatcgttac gaaacgggct tactttggcg ctacgatgac atccgtttac      2880
     caaatagtcg atcgatggcc cttcgacggt atcacctctt ggaaaagcgt atggccaagg      2940
     atccagattt ggccgaagca ttgaatcaga ggatagcgga atacattacg aaaggataca      3000
     ttcgtcaact gacaaaggat gaagaaaccc aatacgtttc acgttcctgg tatttaccgg      3060
     tattcccggt gttcaatccg aacaagccgg ggaaactacg catcgtgtgg gatgcagctg      3120
     ccacgatctt cggtgtttca ctgaactccg ctcttttgaa aggccccgat cagttatgct      3180
     cactcttctc catactcttg cagttccgtg agcattccat tggattaacc ggcgatatac      3240
     gtgagatgtt tcaccagatt aaaattcggg aacaagatca gccatgtcaa cgattttttt      3300
     ggaaggatga atccggagaa acagccgttt ttgaaatgtg tgtcatgacg tttggtgcgt      3360
     gctgttcgcc cagcagcgca cagttcgtta aaaatttaaa tgcagagcga tttgttgggc      3420
     aatatccaca agcagttgaa gctatcatta agcgacacta cgtagatgat atgctagcca      3480
     gcgttaaaac ggaagaggag gcaatcagat tagcgaatga agtcaagcat atccactccc      3540
     aaggcggctt tgagattcgc aactgggtga gcaactccca aacagtttta cgatcactgg      3600
     gagaaaacga tgcgaagacg aaaagccttg acctgtcagc cgaggtagca acagagaagg      3660
     ttttggggtt gtggtggtgt acggaaaccg atacgttcac gtataaagta tgctggtcac      3720
     gttatgatga atctctccta gaaggacgtc gacgcccctc gaaacgagaa gtactgaggg      3780
     tacttatgtc tatttttgat cccctcggtt tgattgcaca ctttttgata tatctgaagg      3840
     tcctattgca agaaatctgg cgctctggag ctcaatggga tgatgaaatc aatgacgtcc      3900
     tatttttaaa gtggcaaatc tggctgcggg tcctacctga agtggaaaac gttcaagtat      3960
     ctcgatgcta ttaccttaaa gactcccccg ataatgaaat cgagttgcat accttcgtcg      4020
     atgctagcga gaatggatac gctgctgtat cttatttgag gacatcaaac gatggagtag      4080
     aatgtacgct tatcacagcc aaaactagag tcgctccttt gaaattccaa tctattccta      4140
     ggcttgaact gcaggccgca gttctcggag caaggttagc acgcacaatc gctgaatccc      4200
     tgtctatacg aacgactcga cgctgtttct ggaccgactc ccgagatgta ttgtgctgga      4260
     ttaactcgga tcaccgtcgg tatacccagt tcgtggcaca ccgagttagt gagctccttg      4320
     acaccacgga ggcaaacgag tggcgttggg tgccgacaaa ggagaatgta gcagatgatg      4380
     ccacaaaatg gcaagggcga ccagacctca ccactgatag cagatggttc aatggaccgc      4440
     aattccttag gacaagtgaa tccaattggc cacaacaagc tccgatacac acgtctacac      4500
     aagaggaaat ccgtccgcat ctagttgcac acatttcgac tgcatctcct gtattgaacg      4560
     taagagatta ctcaaaatag caacggcttc tcaacgtagt gagttttctt tttctttttt      4620
     cggccaactg tcgacgtaaa gctcagaatc agcctaaccg tactgggtca ttggccatgg      4680
     aagaaatacg tgcggccgaa aattatctta ttcaattagc tcaacgagac aactacgcag      4740
     aagaaattgc tagcctaagc cagggtaagc caattccaaa aaatagcccg ctctacaagt      4800
     caactccgtt cattgacaaa agcggaatca ttcgcatgcg aggacgtaca gccaactgtc      4860
     ccttcattac ctacgaagta aagaacccta tcattttacc ccgtgatcac cacgtaacca      4920
     cacttataat tacccactat cataccaaat accaccatct caaccaagaa accgtgatta      4980
     acgaactccg acagaagttc accatttcgc gacttcgagt ctgttgcgcg aaaattcgaa      5040
     gagactgcca acgctgcaaa aatgatcgag ctgtaccaaa cactccagtc atggccgatc      5100
     tacccgatgc tagattggct gcctatgctc gacctttcac ccacgtaggg attgactact      5160
     ttgggccaat ggaagtcgcc gtcggtcgaa gagtggaaaa acgttgggga atgctagcta      5220
     cttgcatgac aacacgagcc gtgcatattg aagtagcgca ttcgctcagc acggattcgt      5280
     gtataatagc catccggaat atgattgctc gtcgtggcgc gcctcgtcat atatactgtg      5340
     accgcgggac caactttgtg gggacatcta atgaacttgg gcgagtgatg cacgaactcg      5400
     acaacgaatc catcatgagc gagttcgttg attctgggac ctcctggtcg ttcaacccac      5460
     catcggctcc acacatgggt ggaagttggg agcggctgat tcgtagtgtg aaatgcagtc      5520
     taaaggccct gaatctaccc cgacgtccct ccgatgaagt gttacataat gctttgctcg      5580
     aaattgaaaa cacgatcaac tcgcgaccat taacacacgt tccgatcgaa gacaacgccg      5640
     ctccagctct cacacccaat cacattcttc tggggagctc aaacggcgtg aaaccactta      5700
     ctatactcaa cgatagcgct accaacgttc gtcagtgctg gcgtttttca cagataattg      5760
     ccaaccagtt ttggaaacgc tggatatctg agtacctgcc ggatataaca aagaggacaa      5820
     aatggtataa ctccaacaca ttatcgattg aaatcggtga cgtggtcgtc atcgtggacc      5880
     cgaaactccc tcgaaactgt tggcctaaag gaagggtgat tgcgacgcgt ccaggtcgag      5940
     atggagaagt tagatcggca acagtaagga ccgctgctgg cgtctatgag cgacctgtag      6000
     tcaagctagc tgtattggag gtaagacgcg aagccgagta gtcgaccatg tgatcgacgt      6060
     acctgggggg ag                                                          6072
//
ID   BEL-183_AA-LTR repbase;    DNA;    INV; 746 BP.
XX
AC   AAGE02026169;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-183_AA_;
KW   BEL-183_AA-I; BEL-183_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-746
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026169; Positions    7871    7126.
XX
SQ   Sequence 746 BP; 267 A; 157 C; 119 G; 203 T; 0 other;
     tgttggcaag cccctggcag ccagcgcgca ccttccatac atcaaccctg ggccgtacac        60
     acaccagcag cgttcacaac gatgacaggt aacgttcacc gtctgtcaac cggtgagtag       120
     aaacaacatg acaagaaagc agaaaacaaa cgaagcaaac gtgtggacaa attgtagctc       180
     agctagttaa actaaaatta cttattacta ttttcttaac tgaacttaac taggtaaata       240
     cttaaactaa aattgaactt tacaactatg tgctattaac tatgaattat gatttgtgtg       300
     cctatgatta ggatttgcat ttgaggcacc actaggtcta acctacatat actgcgagac       360
     tattattttg attagtgcac agtcacggta agggaactac ataaaattta ttacaaatta       420
     cctaaataac tattgattct agcgactaaa cctacgaccc gaagacatac gaaccgacat       480
     ctgactattt agggcaataa acgtaagttg actagaacga tacaaacaaa cagatcttaa       540
     ctcacaccat atatgttcag tacaacataa cgtatgctaa tttacttata atgtgaattc       600
     taaactacgc tcttctttgt ataattactg aattaaaaca ggaatattat aatctaccgt       660
     taaactacac aaagtggacg tgtttcaata cggtgattat aatcgcggaa ttaacccctt       720
     aaataccgtt ggccataaac ccaaca                                            746
//
ID   BEL-184_AA-I repbase;    DNA;    INV; 6265 BP.
XX
AC   supercont1.151;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-184_AA_;
KW   BEL-184_AA-LTR; BEL-184_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6265
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.151; Positions 1274015 1280279.
XX
CC   'TAGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1817..5635
FT                 /product="BEL-184_AA-I_1p"
FT                 /translation="MLENLECLHKSCAAASSNRSAKPISSASGSRTPSSNR
FT                 PFVATAVRDRSKISCFVCRQNHYINQCEEFLKLSPQQRIEKAKSLNLCFNC
FT                 LSSSHTVAQCTRSLCRTCQKKHHTLLHLESKQSLSVVPSEKVPLAQSKPQR
FT                 VTPPTEPSVSNTTVSQAYRSFPIRRQVLLNTAIVYVEDSHKEYHKVRVLLD
FT                 SGSMVNFITEDCIQRLGLKKFKGNTEVTGVCGNTSSIQYKVRTVIHSTTSN
FT                 FETEIECLVTKKITSDLPIEGFDTTSLMIPNNLTLADPSFNIPNKIDVLIG
FT                 ADVYMNILEGNRVPLHNGSPVMQETLFGWVIGGKVEAKRPVVSALVSNENL
FT                 DLLLRSFWETEGGNIESRFTTEEEQAEQHFVDTHRRQEDGRYIVELPFKNG
FT                 CPDLGDSKQMALKRLQALDRRLSRNWTLATDYEDFINEYISLGHMVELGPL
FT                 EHYKAELGQDYFLPHHAVEKPDSSTTKCRVVFDGSAASSNGRSLNDNLLVG
FT                 PVIQPKLNEIALRFRVPKIAITTDISKMYRQVQVASNHQQFQQILWTPTKT
FT                 SDPRVYRLTTVTYGLASAPFQAVRAVKQLCIDEAARFPEAARVIGEDSYID
FT                 DVLTGAETLEQAIQLKDEIIGLFESGKLELHKWCSNSSEFLQTLPQDKIEQ
FT                 KLLVGDKQSVKALGIIWKPDEDVFMLNVDPIILGKAEGTKREILSSISRFF
FT                 DPIGLAGPVIIVVKLIMQGLWRKEKGWDEKADQEDIDRWMEFKTQLASLQQ
FT                 IKISRCILPFTSMSIQIHGFSDASNLAFGACVYLRSMNKNGQVYMSLVCSR
FT                 SRVAPIKKSNKSKGFEPDLTIPRLELCGALLLAQLVTDTINALNIRIDKMV
FT                 LWCDSTIALAWIARQPEQLKQFVANRVAKIQALTSTMEWRHVGTNDNPADI
FT                 ISRGLMPSELQHATLWWNGPEFLRGEESTWPAEYQESGEVYETINVCAEQP
FT                 TETFPIFENISSYRRMVRVMVWVQRFISIMRKQPNVSKASKMSNAEKTSAF
FT                 QQLVKLVQGEAYPDLVRQLQHGKMIDTRHKLISLSPFIDDQGVLRVGGRLR
FT                 NKNCNFDMKHQYILPPYHKFTEAIIREYHRENLHSGNQLTLSMIRETFWIE
FT                 RGKSAIKRFNCLRCFRQKPKPLQQYMGELPTDRVELVYPFYNTGVDFCGPV
FT                 YLKPTIRSTTRAKSYICVFVCQATKAIHLELVGSLTSVAFIGALQRFVSRR
FT                 GKCAKLISDNATNFVGANNELRELHELFNSQPFLKKRHHLEDCGKLEFGPS
FT                 NIICAEPLVKPS"
XX
SQ   Sequence 6265 BP; 1790 A; 1452 C; 1489 G; 1534 T; 0 other;
     ttttggtcct tcgagccgga tagttgaagg gccgtggtgt gaagtgaaac caacggtgaa        60
     tttgaagcga tcgatcgaca atgatgccat gcgggcaaac gatgaccctg ctttggttgt       120
     gtgaacaaac gaaagagacg aacaaaatga cgttcagtgt gacgctcgtg tgagccgtgc       180
     aagtgcgaac gaagacgaca gaaaaattct ggtcagccat tgtattccga accgtcgagt       240
     gtagcacgtg cgtaatcgaa tcgtcgcaat tttgtgactt tgtgctctaa ttactaataa       300
     aagtccggac aatttacgta ccgtcgtaac gagtggtgaa attcgcgaag caaaagtgct       360
     ttaatttcct tgctagcggg aatcgagaat aaattcttgg cgaattgtct cgagtgcggt       420
     gtttttccgc gagatccatc gcgagtggaa tcggtgaaag gagtcaaagg gctccaaaaa       480
     cgtctcgaat tcgagggaga aatcgtccca agtgaaatgg aatcgaattg cttaagcaat       540
     aattccgaaa aagtgcaaat cgtgatcgtt tgaaaccgtc gcgagtgcaa aaactgtgga       600
     cggagcagcc aagctgccgt atcgaaaaag gtgaacagtg aacccaaaaa tcgagaaagg       660
     gaccagatta tacggcccaa aaacatactg aaaattcgga aaagtgaaca ataagtgcta       720
     aaaagggcgt tagagtaccc caagagaaga ataaaagtgc tacaagtgtc ctaagaggca       780
     ccaaactgcg ttccagaaag tgcctactga cgccgtcggc agccattgcg tgtcgctggg       840
     tgagcgagac aacctgcgcc aaccgccaaa ctcctgagaa caaaggtagg tgatgagcca       900
     ttttgtatta cattgagcaa gcccacttaa agcatactag cgtgacctca aaatgaccga       960
     gaaaaagctg caaattgttt gcctgtgtcg aattttcgat gccattcgag atcgctcgaa      1020
     taagctcttg tcgttcgtag aagccttttc tgctgaaacg ggtgacattg acgagctgga      1080
     agaaaaatta tctgtcctcg atgatttacg tggccaattt cttgataccc gttcgaaact      1140
     ctatgggttg gtaaaggacg atgacttggg tgatatccag gaacgtgggg aagaaataga      1200
     ggacatcctt gatagcagtc gtttcaaaat ccgtcgtcat ttgatacgat gcaaaccgca      1260
     aacggaccaa gacatcaaac ttgagttcga agctggtact tccaaaacca agcttcccga      1320
     tattcccctt ccaaaatttg acggacacta cgaaaattgg atctttttcc gggatcaatt      1380
     caagtcaatt atttgtcgtc gtgaaaatct ggatgatttc gagaaattgc actatctgcg      1440
     aatgtgcctg tgtggggagg caaaacattt gcaatgtaac gaggagacgt tttcttcact      1500
     ttgggatgca ttgaaccgtc gctacgaaaa caagagatgg ttggtcgaga aacatttggg      1560
     ggatttgttc caaattccgc atttgactgc cgaaaatgct gctggcttgc gttcgttgct      1620
     cgacaatttt ttaaagcaca tccgtgcttt gaacgccctc gatatcccac tggataaaat      1680
     gtctgaattg atttttgctc aaatggtcat gatacgtcta catccaagaa cccgccgaca      1740
     gtattaagct gagttagagg aatccaaact gccggattgg aaggatttgg tgagcttctt      1800
     ggagaaccac tgccgcatgt tggaaaattt ggagtgtcta cacaaaagtt gtgctgctgc      1860
     ctcttcgaat cgctctgcca aacccatttc gtctgcttct ggttctcgta ccccatcttc      1920
     aaaccgtccc tttgttgcga ccgctgtgcg tgatcgtagc aaaattagct gctttgtgtg      1980
     ccgacaaaat cattatatca accagtgtga agagtttcta aaactgagtc cccaacagcg      2040
     tatcgaaaag gcgaagtctc tcaacctgtg cttcaactgt ctctccagca gtcacactgt      2100
     tgcgcaatgt accagaagct tgtgccgcac gtgccagaaa aagcatcata ctctgcttca      2160
     tctggaatcg aagcaatcgc tttccgtggt cccgagtgaa aaagttccgc ttgcgcaatc      2220
     caaacctcaa cgagtaactc caccaactga accttccgtg tcgaacacca ccgtctccca      2280
     agcttatcga tcgtttccca ttcgacgcca ggttcttctc aatactgcta tcgtttatgt      2340
     tgaagattct cacaaggaat accacaaggt ccgcgtacta ttggattccg gatctatggt      2400
     taacttcatc actgaagatt gtatccaacg gcttggtctg aagaagttca agggcaatac      2460
     cgaagttacg ggagtctgtg gcaatacgtc gtccatccaa tacaaggtac gcacggtgat      2520
     tcattcgacc acttcaaact ttgaaacaga gatcgagtgc ctcgttacca agaagattac      2580
     atccgatttg ccaatcgaag gattcgatac aacctctctg atgattccga acaatctcac      2640
     tttggcggat ccttctttta atattccaaa taaaattgat gtccttatcg gcgctgacgt      2700
     ctacatgaac atcctggaag gcaatcgagt tcctttgcac aatggcagcc cagtaatgca      2760
     ggaaactctt tttggatggg taatcggtgg aaaggttgaa gctaaaaggc cagttgtttc      2820
     tgcacttgtc tcgaacgaaa atctggacct tctgttgagg agtttttggg aaactgaagg      2880
     tggcaacatt gaatcaaggt tcacaaccga ggaagagcaa gcggaacagc acttcgttga      2940
     tactcaccgt cgtcaagagg atggtcgcta tattgtggaa ttgccgttca aaaatggttg      3000
     tccggatctt ggcgattcca aacaaatggc tttgaaacga ctgcaggcat tggacagacg      3060
     cttgtcgcgt aactggacct tggccacgga ctacgaagac ttcatcaacg aatacataag      3120
     tctaggccat atggtggaac tgggtccttt ggaacactat aaggctgaac ttggtcagga      3180
     ctacttcctt ccccatcatg ctgttgaaaa gcctgacagc agcactacca agtgccgcgt      3240
     agtttttgat ggatctgcgg catcaagcaa cggaagatca ctgaatgaca atctactcgt      3300
     tggtcctgtg atacagccga agttgaatga aattgcattg aggttccgtg ttccgaagat      3360
     agcgatcacc acagacatca gtaaaatgta tcgacaagtc caagttgctt caaaccatca      3420
     acaatttcag caaatattgt ggacacctac caaaacaagc gatcctcgtg tgtatcgatt      3480
     aacaacggtg acctacggac tcgcaagcgc accattccaa gcggttcgag cagtgaagca      3540
     attatgtatc gacgaagctg cacgctttcc cgaggcggcg agggttattg gtgaagattc      3600
     gtacatcgat gacgttttga ccggtgcaga aacactagag caagcgattc agctgaagga      3660
     tgaaatcatt gggctatttg aaagtggaaa actcgaactt cacaagtggt gttccaacag      3720
     tagcgaattc ctacaaaccc tccctcagga taaaatcgaa caaaagttgt tggtcggcga      3780
     taaacaatca gtgaaggccc tgggaatcat ctggaagcct gacgaagatg ttttcatgct      3840
     caacgttgac ccaatcatcc tcggaaaggc agaaggtacg aagcgagaaa ttctgtcaag      3900
     catctcaaga tttttcgatc ccattggatt ggccggaccc gtgatcatcg tggtgaagct      3960
     catcatgcaa ggcttgtgga ggaaggagaa aggctgggac gaaaaggcgg atcaagagga      4020
     catcgataga tggatggagt tcaaaacaca gttggctagt ctccagcaga tcaagattag      4080
     ccgatgcatt ctgccgttca cctccatgtc tatccaaatt cacggctttt ctgacgcctc      4140
     aaatcttgcc tttggggcat gcgtctatct caggtctatg aacaaaaatg gtcaggtcta      4200
     tatgtcgcta gtatgctcaa ggtcacgtgt agccccaatc aaaaagtcga ataaatcaaa      4260
     agggtttgag cctgatctca caatacccag gcttgagtta tgtggtgctt tgctcttggc      4320
     tcaacttgtc actgatacca taaatgcctt aaatatccgt atcgataaaa tggttctttg      4380
     gtgcgattca acgatcgctc ttgcttggat cgcacgacag cctgaacaac tcaagcaatt      4440
     tgtggcaaat cgagtcgcaa agattcaggc gttaacatcg acaatggagt ggcgtcatgt      4500
     aggtaccaac gacaacccag cggacatcat atcaagaggc ttgatgccga gcgagcttca      4560
     acatgcaact ttgtggtgga atggacccga atttctgcga ggtgaagaat caacgtggcc      4620
     agcggagtac caagaatctg gagaagtcta cgaaacaatc aacgtttgtg ccgagcaacc      4680
     aaccgaaacg ttccctattt tcgagaacat cagttcctat cgtcgaatgg ttcgagtcat      4740
     ggtctgggtg caacgattca ttagcattat gaggaagcaa cccaacgttt cgaaagcatc      4800
     caagatgagt aatgccgaga aaacatcagc ctttcaacag ttggtcaagc tagtgcaagg      4860
     ggaggcctac ccggatctag ttcgtcagct gcagcatggg aagatgatcg acaccaggca      4920
     taaattgatt tccctatctc cgttcatcga cgatcaaggc gttctgcgag tgggaggacg      4980
     gctacgtaat aagaactgca atttcgacat gaaacaccag tacatcttgc ctccgtacca      5040
     caagttcacg gaagctatca tccgagagta ccatcgggag aatctgcatt ctggaaatca      5100
     gctcaccttg tccatgatca gggagacatt ctggattgaa cgcgggaagt ctgccatcaa      5160
     acgcttcaac tgcctacggt gcttccgtca aaaaccaaaa ccgttgcaac aatacatggg      5220
     cgagcttcca acggaccgtg tggagcttgt ctatcccttc tacaacactg gggtagattt      5280
     ttgtggaccg gtgtacctca aaccgacaat tcgatctacg acccgtgcca agtcctacat      5340
     ctgtgtgttt gtgtgccaag caacaaaagc gatacacctg gagttagttg gatccctgac      5400
     ttcagttgca ttcatcggag cccttcaaag gtttgtgtct cgacgaggaa aatgtgccaa      5460
     gctaatctcc gacaacgcta ccaactttgt cggcgctaac aacgagctcc gggaactgca      5520
     cgagctcttc aactcccaac cttttttgaa gaaacgccat catttggagg attgtgggaa      5580
     gctggagttc ggtccctcaa acatcatttg tgcagaaccc ttggtgaagc catcctgacc      5640
     tatgaggaga tgattactgt gttgacgagt gaaggagatc gaagctaccc taaactccag      5700
     accgctgtgt gctctctccg acgacccaac cgactacaat gccttaacgc cgggtcattt      5760
     tttgatcttc cggccactga acgcaatagc tgaacccgac ttgacaagca caaacatcca      5820
     cactttgtct cgatgggaca aaattaagca gtatgtgcag catttctggc gtaggtggaa      5880
     cgtcgactac atccaccaac tccagcagcg ttctaaatgg cactccaagg ttccagtggc      5940
     agtaggtcag ttggtaattg tacgcgaaga caacgttcct cctcaacagt ggctacaagg      6000
     acgaatcgag caacttttcc ctggtaacga taacatcgtg agagtcgtaa cagtacgcac      6060
     ggcgaaaggc gtatacaagc gatcagtttc acgacttagt ttgctaccaa tcaaggacaa      6120
     cgacattgaa gcaaacaaca acattggata gagatccgat gaaatgtgaa gtcccgagag      6180
     tgcatcgtaa cgacgtcccg aaaaatcaag atctacgaag tcccgacggc aatatgttga      6240
     aagctccctt tcaacggggg gagaa                                            6265
//
ID   BEL-184_AA-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   supercont1.151;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-184_AA_;
KW   BEL-184_AA-I; BEL-184_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-420
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.151; Positions 1273595 1274014.
XX
SQ   Sequence 420 BP; 142 A; 87 C; 78 G; 113 T; 0 other;
     tgtacgagac gcaaacaact agtcccgagt gagatgacca atttcagcgt gcatcaaaaa        60
     tgtaggtaaa tttttctgtt cctaattaga cgactcccga ggaataaaga cgaaacatta       120
     gatagagata gatatagacg ttttaccttt gcacaaggta tataagctag ggtaattagg       180
     aatcaagatc tccttttttg acctctcttt gacttaatac cactcgaccc aacagaagtg       240
     taacgcaaat cagttaattc aagttattcg ttccgagaga ataaagttca attgtcgttc       300
     cgagaataaa ccggtgttaa agtgtttcga tctgagtgaa gacgcaaatt accccttcaa       360
     ctatccggga agcagtgacc tattccaaaa actacagtcc acttaacaac gttccgaaca       420
//
ID   BEL-185_AA-I repbase;    DNA;    INV; 1948 BP.
XX
AC   supercont1.118;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-185_AA_;
KW   BEL-185_AA-LTR; BEL-185_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1948
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.118; Positions 1583505 1585452.
XX
CC   'GGGGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..1878
FT                 /product="BEL-185_AA-I_1p"
FT                 /translation="MEVQCKTCKSPVLLSKCLTCAKCENHYHHECAQMNDS
FT                 TPNLNWECDVCTPSTSGSQIILELHRLQNEVTLERKAIDKRFDMLQKHINI
FT                 IKAEIEKLPQCLPSTAHKRFASNPDSPADDEMSNNESRTTQISPESGLQKM
FT                 FARQVIPSDLPIFTGKPEDWPIFISCYRNSTIACGFTAVENLIRLQRCLRG
FT                 PARQAVCSKLLLPECVDQVIGTLQLLYGRPELLISSLISKMHETPAPSDDD
FT                 LNSLIVYGLAIQNLSDHMIAAGLNSHLNNPCLLQEMVNKLPTHLKLQWASH
FT                 KRDNQDITIATFSTFMSGLVKAASQVTSPHITLDQNNHRDEYSDDSDDDGG
FT                 SSRSSPNNSRREKRRRCYVCKEYSHRVSSCRKFASMHVSKRWELINEIKIC
FT                 SCCLNRHLPWPCKTVRYCGINGCQMKHHPLLHSADNIQSTSGCTVNVGTDV
FT                 HTLLKYIPVTLHGKSRSIDTFAFIDEGSSSTMLDSKLADELCIDGKDDTLS
FT                 LRWIDGSVKTVKTRCINVGISDIDKTNRFMLKDVHTINHLDLPVQQIDALL
FT                 WRSDHLKDLTPYTYQNVKPRLIIGLANAHLAAPSIVRVGKSSEPIVFKCPL
FT                 GWCIYGSTKYNE"
XX
SQ   Sequence 1948 BP; 606 A; 403 C; 409 G; 530 T; 0 other;
     ctaaagaatt tctcaaattg aagcggaatt ttggaacgaa atccgatcat ggaggtccag        60
     tgcaaaactt gcaagtcacc agttctccta tctaagtgct tgacgtgtgc gaaatgcgaa       120
     aatcattacc atcatgaatg tgcacagatg aacgattcga cacctaacct taactgggaa       180
     tgtgatgttt gtacaccatc aacatctggc tcccaaataa ttcttgagct tcatcgattg       240
     caaaacgagg taactctgga gaggaaagct atcgataagc gtttcgacat gttgcagaag       300
     cacatcaaca tcataaaagc agaaatcgaa aaactgcccc aatgcctacc ttcgactgca       360
     cacaaacgat ttgcatccaa tccagattct ccagctgatg atgaaatgag taacaatgag       420
     agtagaacca ctcagatttc accagaatca ggattgcaaa aaatgtttgc tcgtcaagtc       480
     attccatcgg atctaccaat tttcacagga aagcctgaag attggccaat tttcattagt       540
     tgctatagaa actctacaat tgcttgtgga tttaccgccg tcgagaatct catcagatta       600
     cagcgatgtc ttcgtgggcc tgctcgtcaa gctgtttgta gtaaactgct gcttccagaa       660
     tgcgtagatc aagtaatcgg tacgttgcag ttactatatg gaaggcctga gttgttgatc       720
     tcctctctca tctccaaaat gcacgagaca ccagcaccga gtgatgacga tctcaattcg       780
     ttgattgtgt atgggttagc cattcaaaac ttgtcagatc atatgatcgc tgctggattg       840
     aactctcatt tgaacaatcc gtgtcttctc caggagatgg taaacaaact cccaacacac       900
     ttaaaactgc agtgggcttc tcacaagaga gacaaccaag acatcactat tgctactttc       960
     agtaccttca tgtctggact ggtcaaagca gcaagtcaag tcacatctcc tcatatcact      1020
     ctggatcaaa acaatcatcg agatgaatac agcgacgata gcgatgatga cggtggatcg      1080
     agtagatcat cgcctaacaa cagtcgtagg gaaaaacgta gacgttgtta tgtatgcaaa      1140
     gaatacagtc atcgggtttc aagctgtaga aaatttgctt cgatgcatgt aagcaaacgt      1200
     tgggagctta tcaacgaaat taagatatgt tcctgttgcc tgaatcgtca cttgccgtgg      1260
     ccgtgtaaaa ctgttcgata ctgtggcatc aacggctgtc aaatgaagca tcatcctttg      1320
     cttcactccg ccgataacat tcagtcaacc agtgggtgca ctgttaacgt aggtactgat      1380
     gtgcacacct tgttaaagta tatcccagtc acattacatg gaaagtctag gagtattgat      1440
     acttttgcct ttatcgacga aggttcatcg agcaccatgt tggacagtaa gcttgcagat      1500
     gaactttgta tcgatggtaa ggatgataca ctaagtctca gatggatcga tggttcggta      1560
     aagactgtta aaaccagatg cataaatgta ggtatttcag atattgataa gacgaatcga      1620
     tttatgttaa aggacgtaca taccattaat catcttgatt tacctgtaca acagatcgat      1680
     gcattgcttt ggagaagcga tcatctaaaa gatttgacac catatacata tcaaaatgtt      1740
     aagccacgtt tgataatagg cttagccaat gctcacttag cagcaccttc gatagttcgc      1800
     gtaggaaagt ctagtgaacc gatagtcttc aaatgcccct tagggtggtg catatatggc      1860
     agtactaagt ataatgaatg aaagcacgaa attgacgcag ataatttgta aaacaagaat      1920
     taaaattatt gtgttacggg gtggagga                                         1948
//
ID   BEL-185_AA-LTR repbase;    DNA;    INV; 411 BP.
XX
AC   supercont1.118;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-185_AA_;
KW   BEL-185_AA-I; BEL-185_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-411
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.118; Positions 1583094 1583504.
XX
SQ   Sequence 411 BP; 154 A; 70 C; 82 G; 105 T; 0 other;
     tgttgcgaag caatttcgtg acataatagg aacaaagctt cctgtcaaac ctttttgtaa        60
     taagaggaag aacaagttag agaaacgact aaaagtcact taaagtcgac agtgaagaaa       120
     atatcatagg gaaaagaagt ctagtaaagt tgaattgaaa tcatattatc taccttaaac       180
     gaatttaaac actacaagat ccagcaaagc tgaagccatt cgatgtttgt cgaaagataa       240
     gggaatagaa tagaaggtcg cactgagaaa ttgtaaggaa gtgagtttgg aattgcacag       300
     aattggaact aataaatctt gttttagctt tagctcatcc actaaacgaa acacctttga       360
     tttgctgaaa gaagctcagc ctccgactct acgccctatc gttcggcaac a                411
//
ID   BEL-186_AA-I repbase;    DNA;    INV; 1916 BP.
XX
AC   supercont1.94;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-186_AA_;
KW   BEL-186_AA-LTR; BEL-186_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1916
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.94; Positions 1900199 1898284.
XX
CC   'GCCGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..1893
FT                 /product="BEL-186_AA-I_1p"
FT                 /translation="MEVQCEKCKSPALLVRCLTCSLCENHYHHECLGMVDS
FT                 SPKSDWKCNECVSSTQGNQIASGLQRLQDALSSEREAIDRRFDRLQKHLNA
FT                 LRAQIEKSPTPTNPIVNQLFASDVGESTDDETNITQNGSVLESGLQKMFAR
FT                 QVIPSDLPIFTGKPEEWPVFISCYNNSTKACKFTNVENLMRLQRCLRGSAR
FT                 RAVDSKLLLPECVPQVIETLKLLYGRPELLISTLISKLRDTPAPRDDDLNS
FT                 LITYGLAVQNLSDHMIAAGLKSHLNNPCLLQEMINKLPTHLKLQWAAHKRD
FT                 HDSSTIATFSKFMSELVEAASLVPSTIVLDQNDDRDEHSDDSDDDRGSSRS
FT                 YRNNSRREKRKCCYVCGESNHRVSSCTVVANMPVSKRWELVNQLKICPPCL
FT                 NRHLPWPCKTVKNCGVNECRLKHHQLLHSANDTAHTSGCTIDVGSCNRTLL
FT                 KYIPVTLYGKSKQIDTFAFIDEGSSRTMLEAQVAEELEIDGKPDSLTLKWI
FT                 DGTVNTNTTKTLTVGISGVNHTKRFSLRDVFTVENLDLSIQNFNSALLFDD
FT                 SLKDLPPFRYASAKPRLLIGLSDAQLVVPSIVHVAKNNEMIACKCSLGWYY
FT                 YGNSRGDNEKQNNRGEFVTHSLK"
XX
SQ   Sequence 1916 BP; 594 A; 398 C; 430 G; 494 T; 0 other;
     ctaaagaatt tttcaataat atccgaccaa atggaggtcc aatgtgaaaa atgcaagtca        60
     ccagctttat tagtgagatg cctaacctgc tcactatgtg agaatcacta tcatcacgag       120
     tgtctgggca tggtcgattc ctcacctaaa tccgattgga aatgtaacga gtgtgtgtca       180
     tcaacccaag gcaatcaaat agcttcaggt ttacaacgac tacaagacgc gctatcatct       240
     gagagagaag ctatcgatag gcgatttgat cgtctgcaga agcaccttaa cgcattgaga       300
     gcacaaattg aaaagtcacc tacaccaact aatccgatcg taaatcagct gtttgcatcc       360
     gatgtaggcg aatctaccga tgacgaaacg aacataactc aaaacggtag cgtattggag       420
     tccggattac aaaagatgtt tgctcgccag gtcatcccat cagatttacc aatattcacg       480
     ggcaaacctg aagaatggcc cgttttcatt agctgctaca acaactctac gaaagcatgc       540
     aaattcacca atgtagagaa ccttatgaga ctgcagcgat gtcttcgtgg ttctgctcga       600
     cgagccgttg atagtaaact actgctccct gaatgcgtgc ctcaagtcat cgagacttta       660
     aaattgttgt atggaaggcc cgagttgttg atatccactt tgatctccaa actgcgtgat       720
     actccagcac cgagagatga tgatctgaac tcgttgatca catacggctt agccgttcaa       780
     aacttgtcgg atcatatgat cgctgctgga ctaaaatcac acctaaacaa tccgtgtctc       840
     ctccaggaga tgataaacaa acttccaaca catttaaagc tgcaatgggc cgctcataaa       900
     cgagatcacg atagtagtac tatagccacg tttagcaaat tcatgtctga attggtggaa       960
     gcagcgagtt tggttccatc caccatagta ctggaccaga acgatgatcg agatgagcac      1020
     agcgacgata gtgatgacga tagaggatca agccgatcgt atcgcaacaa cagccgacgg      1080
     gaaaagagga aatgctgcta tgtgtgcgga gaaagcaacc accgcgtttc tagttgtacg      1140
     gtagttgcta atatgccagt gagtaaacgt tgggagcttg ttaaccagtt aaagatatgt      1200
     cccccttgct tgaatcgaca cttgccgtgg ccatgcaaaa cggttaagaa ctgcggagtg      1260
     aatgaatgtc gattgaaaca tcatcaattg cttcattcag cgaatgatac agctcataca      1320
     agtggatgta ccattgatgt tggtagttgc aatcgtacct tgctaaaata catcccagtg      1380
     accttatatg ggaagtccaa gcaaattgat acgttcgctt ttatcgacga agggtcgtcg      1440
     cggaccatgc tagaggcgca ggttgcagaa gaactcgaga tagatgggaa acctgattca      1500
     ctgactctaa aatggataga tggtacagta aacactaaca cgacaaagac cttgactgta      1560
     ggaatttctg gggtaaacca cacgaaacgg ttttcattgc gggatgtgtt tacagtggaa      1620
     aaccttgatt tatcaattca aaatttcaat tcagcattat tgttcgatga ttccttgaaa      1680
     gacttaccgc cgtttaggta cgcaagtgcc aaaccacgtt tactgatagg tttgtcagat      1740
     gcgcaactag ttgtaccatc gatagttcat gtagcgaaaa ataatgaaat gattgcttgt      1800
     aaatgttctt taggctggta ttattatgga aattcacgag gagataatga aaagcaaaat      1860
     aatcgcggag agtttgtaac acattctttg aaataattgt gttacggggg ggagaa          1916
//
ID   BEL-186_AA-LTR repbase;    DNA;    INV; 494 BP.
XX
AC   supercont1.94;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-186_AA_;
KW   BEL-186_AA-I; BEL-186_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.94; Positions 1898283 1897790.
XX
SQ   Sequence 494 BP; 164 A; 78 C; 106 G; 146 T; 0 other;
     tgttgcgata gtattttgca tttagattta attcaaatac ttcagagaaa ctgctaactg        60
     gaattgcgaa ctgtaaattg attcagtgta aaagttctca taagagagag cataagaaga       120
     cgaaagttga aaggattccc taaagccgtc acagcgcttc atcgggattt atagtttaga       180
     ttatatagtt tatataaaag aagtaagtaa ctgttgaaat gtgtttgcaa atgtattaat       240
     ctagtgtcta aatttaccac agttaacact gagaagatcc ggcgaagccg atgccagtag       300
     atgtttgctg agtggaagat agggcacaga tagtggttgc actgaaaaat tgtaatgcga       360
     ggtaaatgag tcatgaagac attgatctaa tcaaactgaa tttttagctt tagcttatcc       420
     accaatttgc ggagttaact tgattagctt aaagaagctc agttcccgac caggcgccct       480
     accctttggc aaca                                                         494
//
ID   BEL-187_AA-I repbase;    DNA;    INV; 6234 BP.
XX
AC   supercont1.91;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-187_AA_;
KW   BEL-187_AA-LTR; BEL-187_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.91; Positions 1040178 1033945.
XX
CC   'GTCAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..6232
FT                 /product="BEL-187_AA-I_1p"
FT                 /translation="MPETDLFDCKLCRRSNNVDDMVFCAACQEWYHYQCVG
FT                 VTSAVANESWMCARCAALPSSTRIGELYGSDPLFPATIVTVSSVKATESSS
FT                 IVASTSSVVSLAASAGLPLAATAASPITSSTAASGPVPPAIAGPSGWLPTT
FT                 TTAISATNYGQSLLTDQARASLQWVQEHRAFLERQMEESHKKELERKKAML
FT                 GQLANNAMQGVITEATSNNLNEQSAAVGTSNVGGWLGRMIGEMENLSLTPA
FT                 STETRMTAPSVSVLNNSSTPTTVGSADRSVFDPSLASLLLGVPSIMSRAST
FT                 NSFPSGQYTTMPSVPSYCYPQPVRDPSQQFGAFPISTIPTMSLSNANLTNV
FT                 VTACPTVPIASIPQGPVYGGLSVNASIPRMEPFPHSSQSSLGGHPWVNVPQ
FT                 APQLPQTSPFSVVPTQQQLLARQVMPRDLPLFRGDPEDWPLFFSAYTNSTA
FT                 ACGYTNVENLARLQRALQGKAIEAVKSRLLLPACVPQVMSTLYMLYGRPEL
FT                 IIQTLLEKVRDTPAPKSDRLETLITFGMAVQNLCDHIEATGQVAHMCNPVL
FT                 LRELVDKIPAQQRLNWALYKQQFTGVDLRTFAGFMSMLVSAASDVTVTSDS
FT                 KQSRSGRGERGKDKNFLNAHAVSEKDSKPFKQEEELHKTDVKEVLCLTCNG
FT                 RNHKVKDCATFKRWDPDTRWKAIQDHHLCRICLGKHGRRPCKLQVICGLDG
FT                 CQQRHHQLLHSSSQKLLPPAKEGQKAVKQSDNPGERLNAHHATKKSTLFRI
FT                 LPVKLFWKGKSVETFAFLDDGSEMTLVEESIAERLGIDDGEPLPLCLTWTS
FT                 NVTRQEPDSQRVCLEISGEGKSEKFSLKDARTVSSLNLPNQTLKYGELARR
FT                 YTYLRGLPVTSYESATPGILIGSNNASLTATLSLREGQLGDPLASKTRLGW
FT                 SIYGYTAEGEKAMNFTLHVCECRRECQAGEDLHDLVKQYFTVESVGVSADK
FT                 GPESQEDKRARQILEETTKRIANRFEIGLLWRHDLVEFPNSFPMAMRRLEC
FT                 FERRMKRDPELRTSVQQQISEYVESNYIHEVTRDEMESTDPRRVWYLPLGA
FT                 VRNPKKPGKTRLVWDAAAKVGGVSFNSMLLKGPDLLTPLASVLCKFRERPV
FT                 AVSGDLKQMFHQFRIRQQDAHSQRFLYREHPSQPVKIFVMDVGTFGATCSP
FT                 CQAQYIKNRNAKEHEVEFPKAAEAIVEKHYVDDYLDSFDTEAEAIKVALEV
FT                 KEVHSRGGFEIRNWHSNSDALLRRVGEPRGIQPKAISIDLESEAERVLGLL
FT                 WLPEEDSIAFATDLQLEGIIPTKRNILRCVMSLFDSQGILSHVTIQGRMII
FT                 QDTWRKQTQWDDEVVEAVRMRWLRWTELFRKVGRMRLHRAYFPGYTATEIG
FT                 AVELHVFTDASEEAYACTAYFRVVIMGNVYVTLVMAKAKVAPLKSLSVPRL
FT                 ELMGALLGARLAKAVKEYHTLPICRRVMWTDSKTTLAWIQSQHHRYRQFVA
FT                 FRVGEILSKTEAAEWRYVPTQHNPADDATKWGKGPSTDVMSRWFRGPDFLY
FT                 KPEIEWPEQRSTQSQETDEELRPCMVHQQKLFEDIYKICNFSKWERLLRTV
FT                 AYVHRYIDNCKLKRKKEKLTMGHLQQKELQKAENSLWRTVQSSAYPDEIAA
FT                 LKQGNGISKKDIDKTSPVYKLSPFLDEHGVMRVDSRIGAVTYVTYDFKFPI
FT                 ILPRNHQLTKLVIDWYHRRYLHANHATVQNEVHQRFHVSNLRSAIRQVTKE
FT                 CQACKIAKTVPTIPRMAPLPESRLAAKERPFSYVGLDYFGPIQVRIGRSCV
FT                 KRWVALFTCLTVRAVHLEVAHSLSTESCKMAIRRFVARRGSPVEIRSDNGT
FT                 NFQGASRELRDQIGVIGQKLAETFTNTNTRWVFNPPSAPHFGGSWERLVRS
FT                 VKVALGSLCGNRNPDDETLLTVLAEAESIVNSRPLTTIPLESVSQEALTPN
FT                 HFILLSSSGVVQPSTKLAEPTKVTRTNWNMARQLVDQFWRRWISEYLPTIA
FT                 LRSKWFGEAAKLKVNDLVLIVDEGQRNGWMRGRVVAVIPGADGRIRQAMVQ
FT                 TTKGLFRSPMTKLAVLQVQGDSNTEAVCRPEVRYGSG"
XX
SQ   Sequence 6234 BP; 1694 A; 1493 C; 1647 G; 1400 T; 0 other;
     ataagcttta agaactgctt cgatcaccaa cgagaaagga aggatgccgg aaacagattt        60
     gttcgactgc aaactatgtc ggaggtcgaa caacgtagat gatatggtct tctgtgcggc       120
     gtgccaggag tggtaccact accagtgcgt gggagtaacc tcagcggtgg ccaacgaaag       180
     ttggatgtgt gcacgatgcg cggctttacc gtcgtccaca cggattggcg agctttacgg       240
     aagtgatccg ctattcccgg ctactatcgt tactgtatcg tcagtgaagg ccaccgaatc       300
     atcgtcgatc gtagcttcaa cctcttcagt ggtatcgctt gcagctagcg ctggattacc       360
     gctggcagca actgcagcat ctccaattac gtcttctact gcagcttctg gtccagttcc       420
     gcctgcaatc gctggaccat ccggctggct acctacaacg acgacggcta taagcgctac       480
     taactatggc caatcactgc tgacggatca ggcacgagcg agtctacaat gggtacaaga       540
     gcatcgagca ttccttgagc ggcaaatgga ggagagtcat aagaaggagt tagagaggaa       600
     gaaggccatg ctagggcaac tcgcgaacaa tgccatgcaa ggcgttataa cggaagcgac       660
     atcgaataac cttaatgagc aatccgctgc ggttgggacc agtaacgttg gaggctggct       720
     ggggagaatg atcggcgaga tggaaaatct gtcgctcaca ccagcgagca cggagacaag       780
     gatgacagca ccgtcggtat ccgtactcaa caacagctcc acaccaacaa ctgtgggttc       840
     tgctgaccga agcgtattcg atccatcctt agcgtcgctg cttcttggag tgcctagtat       900
     tatgtccaga gcttccacaa actcctttcc ttcaggtcag tacactacaa tgccgtctgt       960
     tccttcatat tgttacccgc agccggtccg agatccctct caacaattcg gtgcgttccc      1020
     aattagcacg attcctacta tgagtctgag caacgctaat ttgacgaacg tggtaactgc      1080
     ctgtccaacc gttcccattg catcgattcc gcaggggccg gtttatggtg ggttgtcagt      1140
     gaatgcaagt atacccagaa tggaaccatt tccccattcc tcacaaagtt ccttgggtgg      1200
     gcatccttgg gttaacgtac ctcaagctcc tcaattgcct caaacgtccc cattttccgt      1260
     tgtcccaacg cagcaacaat tgttagcgcg acaagtcatg ccgagggatc ttcctctgtt      1320
     tcggggcgat ccggaagatt ggccgctatt ctttagtgca tacactaatt cgacggctgc      1380
     atgtggctac accaatgtgg agaatttggc ccgacttcag cgtgcgcttc aaggtaaggc      1440
     catcgaggca gtaaagagcc gtttgctgct tccggcttgc gtcccacaag tcatgtctac      1500
     tttgtacatg ctgtacggaa gaccggaact gatcattcaa acattactgg aaaaggttcg      1560
     tgatactccc gctccaaaat cagataggtt ggagacattg attactttcg gaatggcggt      1620
     acagaattta tgtgaccaca tcgaggcaac ggggcaagtt gcgcacatgt gcaaccccgt      1680
     cttactgcga gagttggtcg ataagattcc ggcacaacaa cgtttaaact gggcattgta      1740
     taagcaacag ttcacgggag tagatttacg cacattcgct ggctttatgt ctatgttagt      1800
     gtcagctgct tcggacgtca ccgttacatc ggattccaag caatcgcgat cgggccgtgg      1860
     agagcgtgga aaagataaga atttcctcaa tgctcatgcc gtaagtgaaa aggattcgaa      1920
     accgtttaag caagaagagg agttacacaa aacagacgtc aaggaagtgt tgtgtttgac      1980
     ctgtaacggg cgtaaccata aggtgaagga ctgtgcaacg ttcaaaagat gggacccgga      2040
     tacccgctgg aaggcgattc aagatcatca tttgtgtcgc atttgcctag gcaaacacgg      2100
     acggcgtcct tgtaagctac aagttatttg cggactagat gggtgccagc agcgacacca      2160
     tcagttactg cactccagca gtcagaaact tctaccccca gctaaagaag gccaaaaagc      2220
     tgttaagcag agcgataacc ctggagagag gcttaatgcg caccatgcta caaaaaaatc      2280
     tacactattt cgaatccttc ccgtaaagct attttggaag gggaaatctg tagaaacctt      2340
     tgcgtttttg gatgacggat cggagatgac tctagtggaa gagtcgattg cagaacggtt      2400
     aggcatcgat gatggtgaac cactccccct ttgcttaact tggactagca atgtgactcg      2460
     ccaggaacca gattctcaac gtgtttgtct ggaaatttcc ggagaaggca aaagcgaaaa      2520
     gttttccctg aaggacgcaa gaacagtttc tagcctaaac cttccgaacc aaacgctgaa      2580
     gtacggtgaa ctagcccgac gatatacgta ccttcgtggt cttccagtaa ccagctatga      2640
     atcagccaca cctggcattc tgattggctc aaacaatgct agcctgaccg caacgctaag      2700
     cctgcgtgag ggtcaactag gtgacccttt ggccagcaag actcgactcg gttggtcgat      2760
     atacgggtat acggctgaag gagaaaaggc aatgaacttc acgctacatg tttgcgaatg      2820
     tcgacgagaa tgtcaagctg gtgaagatct gcacgatctc gtcaaacagt acttcacggt      2880
     cgagagcgtc ggagtttcag cggacaaggg gccggaatcg caggaggaca aacgcgcccg      2940
     ccagattcta gaagaaacca cgaagcgcat cgcaaacaga ttcgagatag gactgctctg      3000
     gcgccatgac cttgtggaat ttcccaacag ttttcccatg gcaatgcgtc gtttggaatg      3060
     cttcgagcga aggatgaaaa gggatccgga gctgcgaaca agcgtacagc aacagattag      3120
     cgaatatgtt gaaagcaact atatccacga ggtaacgcgg gatgaaatgg agtctacaga      3180
     ccctcgaagg gtatggtatt tgccgctagg cgccgtgaga aatccgaaaa agccgggcaa      3240
     gactaggcta gtttgggatg ctgctgccaa ggtagggggt gtgtctttta actccatgct      3300
     gctcaaagga cccgacttgc tgacaccttt ggcttcagtg ctatgcaaat ttcgggaaag      3360
     gccggtagca gttagcggag atctgaagca aatgtttcac cagttcagaa tccgccaaca      3420
     agatgctcac agtcagcggt tcctctaccg ggagcaccca tcacaaccgg ttaaaatatt      3480
     cgtgatggac gtcggtacct ttggggccac atgctctccc tgccaagccc aatacattaa      3540
     aaatcgtaac gcgaaggaac acgaagtaga atttcccaaa gcagcggaag ctatcgtgga      3600
     gaaacactac gtcgatgatt acctcgacag tttcgacacg gaagcggagg caatcaaggt      3660
     tgctcttgaa gtgaaggaag tgcactccag aggaggattt gagatccgga attggcattc      3720
     caactcagac gcccttctgc gacgggtcgg ggaacccagg ggaattcaac cgaaggccat      3780
     cagcatcgat ttggaaagcg aagcggaaag agttctaggc ctcctatggt tgccggagga      3840
     agattctatt gcatttgcta ctgacctgca actagaaggt attataccga caaagcgaaa      3900
     catcctacgt tgtgtcatga gcctgttcga ctcacaaggt atcttgtcac acgtaacgat      3960
     acaaggacgt atgatcattc aggacacctg gcgcaaacag acgcaatggg acgacgaagt      4020
     cgttgaagca gtccgtatgc gctggcttcg atggacggag ctgtttagga aggtcggtcg      4080
     aatgagactc cacagagcct actttccagg atacactgcg actgagattg gtgcagtaga      4140
     gctgcacgtt ttcacggatg cgagtgagga agcatacgca tgtacggcat actttcgggt      4200
     agttataatg ggaaatgtgt atgttacgct ggtgatggcc aaggcaaaag tagcaccttt      4260
     gaagtcttta tcagtacctc gcctggagct gatgggagca ctgctgggag caaggttagc      4320
     caaagcagtg aaagaatacc acacacttcc aatatgccgg cgagttatgt ggacagactc      4380
     gaagacaacg ctggcgtgga ttcaatcaca acatcatcgc taccgacagt ttgtggcttt      4440
     ccgagtggga gagatcttga gcaagacaga agccgccgaa tggagatacg ttcccacgca      4500
     acataatcca gccgatgatg caaccaagtg gggaaagggt cctagcacgg atgtgatgtc      4560
     ccgatggttc cgcggacccg acttcctcta taagccagaa atagagtggc cggagcaaag      4620
     atcgacgcag tcgcaggaga cggatgaaga attgaggccc tgcatggtac accaacagaa      4680
     actatttgag gatatctaca agatctgtaa tttttcgaag tgggaacgct tacttagaac      4740
     agtcgcatac gttcaccgtt acattgacaa ctgcaagctt aagaggaaga aagagaagct      4800
     gaccatgggg catctgcagc agaaagagtt gcaaaaggca gagaatagcc tgtggcgcac      4860
     agtacagtca tcagcgtacc cagatgagat cgctgcccta aagcaaggaa acgggatctc      4920
     gaagaaggat atcgataaga ctagtccagt atataaactc tcgccgttct tagatgagca      4980
     cggggtcatg cgagtagaca gtcgtatcgg agcagtcaca tacgttacgt acgacttcaa      5040
     gtttccgatc atcctgccac gaaaccatca acttaccaag cttgtcatcg actggtatca      5100
     tcgtcgatat ctacacgcta atcacgcaac ggtacaaaat gaagttcatc aacgcttcca      5160
     cgtctccaat cttcgctccg cgatacgtca agtcacaaag gaatgccagg cttgtaagat      5220
     cgccaaaaca gtaccaacca taccaaggat ggctcctctt ccagagtcac gtctagcagc      5280
     caaggaacgg ccgttctcct acgtcgggct ggattatttc ggacctatac aggttcgtat      5340
     agggcgtagt tgtgtaaaac gatgggtcgc gctgtttacg tgcctcactg ttagagccgt      5400
     gcacttggag gtggctcatt ccctgtctac ggagtcttgc aagatggcaa ttcgtcggtt      5460
     tgtggcgcgt cgtggatcac ctgtcgaaat tcgatcggat aatggcacca attttcaggg      5520
     ggccagtcgt gaactgcgag atcagattgg ggtgattggt cagaaactgg cggaaacctt      5580
     tacaaatacg aatacacgat gggttttcaa cccaccctct gcgccgcact ttggaggatc      5640
     atgggagcga cttgtaagat ccgtcaaagt cgcactcggt tcactgtgcg gtaatcgaaa      5700
     cccggacgat gagactttgt taacggtcct ggcggaggcc gagtctatag ttaactctag      5760
     accgttaacc accatccctc tagaaagcgt tagccaggag gcgctaacgc cgaatcattt      5820
     tatcctgcta agctcaagcg gagttgtgca accttcaaca aaactggcag aaccgacaaa      5880
     agtaacgcgg accaactgga acatggctag acagctagtg gaccaatttt ggcggcgatg      5940
     gatcagtgaa tatctgccga ctatagctct aagaagcaaa tggtttggcg aagctgcgaa      6000
     actgaaagta aacgatcttg tgctaatcgt ggatgaaggt caacgtaacg ggtggatgag      6060
     aggtcgggta gtagctgtga ttccgggagc tgatggccga attcgccaag ccatggtcca      6120
     gactaccaaa ggattgttcc ggagcccgat gactaagttg gcagtactcc aggtgcaagg      6180
     cgatagtaac acagaagcgg tatgcagacc ggaagtgcgt tacgggtcgg ggga            6234
//
ID   BEL-187_AA-LTR repbase;    DNA;    INV; 639 BP.
XX
AC   supercont1.91;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-187_AA_;
KW   BEL-187_AA-I; BEL-187_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-639
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.91; Positions 1033944 1033306.
XX
SQ   Sequence 639 BP; 203 A; 120 C; 132 G; 184 T; 0 other;
     tgttgccgac actggcagca ctgggaattt gaattgcgaa tcgacccaca aaggcccccg        60
     gttggactta acacgcagcg actgacaatg accgtgcgca aggctcgatg cgtgcaaaat       120
     gtcaagataa ggggagagtg ataatttgcg agtcatgtaa acagcagcag ttgaacggaa       180
     gaaatttgtg ctatattatt gaatttttga atatcctatc gggtcgattg attgtactta       240
     attactagtt tgctctgtaa gttgaacata ttttcgctgc acaatttgaa tattgaatta       300
     tcataggttt gtttcttaaa tagattagct tagtatcctc aggagttacc atccttttgt       360
     ctgcggtcgc aagagaacga tattacaatc gtaggttcta acctattcat atagatatat       420
     gcttaagatt aaaacatgat cccccccaat ttagaagact tctctataag gaaacacgta       480
     ttaagattgt tggagtagaa ataactaagg agaccagttg tgagtagcaa tgaattcgat       540
     aaagttacac catttaataa acgctatttc cagcttaaag aactcggcac agaacaacac       600
     cagtgcagct tctgttaaga ggtccgaaat ctcccaaca                              639
//
ID   BEL-188_AA-I repbase;    DNA;    INV; 6505 BP.
XX
AC   supercont1.88;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-188_AA_;
KW   BEL-188_AA-LTR; BEL-188_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6505
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.88; Positions 1280708 1287212.
XX
CC   Positions [5720-6112] - Integrase core
CC   'CACGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..2116
FT                 /product="BEL-188_AA-I_1p"
FT                 /translation="MLGSKKATDRRSSVIRQLTEEESSTVGCCPSCDRPDV
FT                 ADKWMVQCELCERWFHFSCAKVNESIKDRSFACTTCALPPCPESTRTGASR
FT                 TSSTRRRLELLRLEEEKEVQERILREHAEEEAAQQKKAQEEEKDRRKRIME
FT                 EKLEIARRYITKKFEVLQEEEQSIDGRSRKSNLSTRSKLDNVQKWVEDHDL
FT                 AAATGSGTNHVPAGSTPITEAGPNRASVETSESVILPTSSAHAHAPLARVA
FT                 ATGLYDKDEIASWGILVPRFGQYASNPTSGLNTLPRTTPQTTVQDGQTSHA
FT                 APFFAAAEISPPASVQQTGPGAFSMEISPPPANEKSRADLERDLHELQQQL
FT                 ANLKRASSTQHYPELRPNNSSEPTAATTSLSNTLGSGMSNLHASTQAGHVV
FT                 DRQVHIPISRSVSQASGLGQDTATYVNPMVVSFPSQSNLSGIPNLLFNHTY
FT                 QATSADWYRQYHESVPNYRRQNPLLPVSTAAGRVPRQYEQSFPNPPNQHPP
FT                 FPSGVPSYPFVASVPSVPNPIVTPSVSQEVVHHPPVSVCGPSPQQIAARHV
FT                 VPKELPEFYGDPIDWPLFVSSYNNSTRMCGYSDDENLMRLQRCLKGNAKEA
FT                 VRGHLYHPSSVPQIMATLETLYGRSELIVRCLMNKVLATPAPKADKLESLI
FT                 SFGLVVQPTTCSSGGFARFQYVYDHDCIGSQQRYTLRRTVAESG"
FT   CDS           2052..5726
FT                 /product="BEL-188_AA-I_2p"
FT                 /translation="MTTIVSAASNVTLYVEPLRKVDKPKGKEKGFVNAHSS
FT                 ESEQKADRNVRKESGGASTVYQPKPCLMCKKDGHKVKDCISFKKLSLENRW
FT                 KTAQQLSLCRRCLIPHGKWPCKATECGENDCKARHHRLLHPGNPQSPTSEA
FT                 TTSTRGQTTSIPSATVNVHRQLPCPVLFRILPVTLYGKKVSINTLAFLDDG
FT                 SSYTLMEKSLADELGVEGDTEPLCLQWTSNIKRTEWDSQNVQLEISAVGKN
FT                 QKHSLEFVRTVESLNLPPQSLQYEEMAQKFEYLKGLPVDSYPSTAPRILIG
FT                 ADNAKLLLTLKKREGRYNEPVAAKTRLGWTIYGKMQGLDGKPDHHLLHICE
FT                 RSNDQQLHDAVKDFFTIENVGVALAPLVESEEDRRSREILEATTVRTPSGR
FT                 FQTGLLWKFDYIEFPENRFMAEKRLMCLERSLAKKPELYVKVRQQILDYQT
FT                 KGYAHKLTEEESSDSDPRRVWYLPLGVVQTPSKPGKVRVVWDAAAKTGGVS
FT                 LNSMLLKGPDLLTSLPSVLFRFRERQVAITGDIKEMFHQILIRPEDRQSQR
FT                 FLWRENSEDPIQEFVMDVATFGSTCSPCSAQYIKNKNAEEWKNVYPEAAAA
FT                 IVENTYVDDYANSSDTVEEAVRIALEVKEIHASAGFEIRNWLSNSPQVLQR
FT                 VGEQRLQVTKSFIAEKSTESERILGMAWQPESDEFTFALRLRTDVQLLLAE
FT                 EIIPTKRQVLQVVMSIFDPLGLVAAFVIQGKCLIQDIWRAGVGWDDYIPND
FT                 LLPHWRRWVNVLQNLNQVRIPRCYFPGYDPRSIGSLELHVFVDASETAYAC
FT                 AAYFRIVDRGQVRCALVSAKTKVAPLNPMSVRRLELQAAVIGVRLMKSVQS
FT                 NHSLPIKRRVLWGDSKTVQSWIRSDQRKYRQFVAFRVSEILNATSLEEWRW
FT                 VPTRLNVADAATKWGKGLSFNADSRWFLGPEFLYEDESRWPNQEYSPPNTL
FT                 EEIRSIHAHHRVTSDPLINYQRFSNYQRLLRTVGYVLRFIDRCRRRSITLS
FT                 DMDVLSREELLNAEIVLWKLVQLEEYPDEVATIRRNKSLRPEQAIRLEKGS
FT                 PLRKLSAFLDDHGVLRIEGRIDAAEFVPYGPKHPVILPKAHRFTELLVLRF
FT                 HQRYAHGYGETVINELKQIYHIPNLRTVVRKVARRCSWCIVYRAVPKTPRM
FT                 APLPAARVTPYVRPFTFIGIDYCGPFLIRIGRSNVKRWVVLITCLTIRAVH
FT                 LEVACSLSTESCKWR"
XX
SQ   Sequence 6505 BP; 1795 A; 1543 C; 1684 G; 1483 T; 0 other;
     aactttaagg tttctaacct tacaaacgac cttcggaatg ctgggctcta agaaggcaac        60
     agatagacgg tctagtgtca ttcgacagct gacggaagag gaaagttcta cagtcggttg       120
     ctgtccttct tgtgaccgcc cagatgtcgc cgacaagtgg atggtacaat gtgagctttg       180
     cgaaaggtgg ttccacttct cttgtgcgaa ggtgaacgaa agcataaagg accgtagctt       240
     tgcgtgcact acatgcgcac tccctccatg tccggagtcc accagaacag gtgcgtcaag       300
     aaccagttca acaagaagac gactggaact tctacgattg gaggaggaga aggaggtaca       360
     agagaggata ttaagggaac acgcagaaga agaagctgcc cagcagaaaa aggcgcagga       420
     ggaggaaaag gatcgaagga aaaggattat ggaggaaaag ctggagatcg cgagacgtta       480
     catcacgaaa aagttcgaag tgctacagga agaggagcag tcgatcgacg gtagaagtcg       540
     aaagagtaat ttgagcacac gcagcaaact cgacaacgtt caaaaatggg ttgaggatca       600
     cgatttagca gcggcaactg ggtccgggac gaaccatgtc cccgctggtt ccacgccaat       660
     cactgaagct ggccccaatc gagcatcggt cgagacttct gaaagtgtta tacttccgac       720
     ttcttctgct catgctcatg cccctctcgc tcgtgtagcg gctacaggac tgtacgataa       780
     ggacgaaatc gcatcgtggg gaatattggt gccccgtttc ggccaatacg catcaaatcc       840
     aacttccgga ttgaacacac tacctcgaac tactcctcaa accacagtgc aagatgggca       900
     aacttctcat gccgccccat tcttcgcagc agctgaaatt tcaccacctg catcggtaca       960
     gcaaactggg ccgggggcgt tttccatgga aatatctcca ccacccgcca acgagaaatc      1020
     aagagcagat ctggagcgag acttacatga gctacaacag cagttagcaa acctgaagcg      1080
     agcgtcgtct actcagcact atcctgaact gcgtccgaac aacagcagtg agccaacggc      1140
     agctaccacc agcctaagta acacattggg ttcaggtatg tcaaacttgc atgcttcgac      1200
     acaggcaggt cacgtggtag acagacaggt gcatattccg attagtcgtt cagtaagtca      1260
     ggcttcaggt ttaggtcagg acactgctac atatgtgaat ccgatggttg tatcatttcc      1320
     ttcacaatca aatctatcag ggattcccaa tcttttattt aatcatacct atcaggctac      1380
     ctccgccgat tggtatagac aataccacga aagtgtccct aattatcgaa gacaaaatcc      1440
     gcttcttccg gttagtaccg ccgccggtcg tgtgccgcga caatacgagc aaagttttcc      1500
     gaatcctccg aatcaacatc caccatttcc gagtggcgtt ccttcatatc cgttcgtcgc      1560
     gagtgtacca agtgttccga acccgatcgt cacgccatca gtatctcaag aagttgtgca      1620
     ccatcctccc gtctcggttt gtggtccgag cccccagcaa atagccgcta ggcatgtggt      1680
     tcccaaggag ctaccggaat tttatggcga tccgatagac tggccattgt tcgtgagcag      1740
     ctacaataat tcgacgcgta tgtgtggtta tagcgatgat gaaaatctca tgcgtcttca      1800
     acgttgcctc aaggggaacg ctaaggaggc agtgcgaggg cacctttatc atccgtcatc      1860
     tgtaccccag atcatggcaa ccttagagac actttacgga cgctcggaac taatagtgag      1920
     gtgcctgatg aacaaagttc ttgcaacgcc agctcccaaa gcggacaagc tggagagcct      1980
     tatcagcttc ggactcgtgg ttcaaccaac gacatgttcc agtggtggat ttgcgcgctt      2040
     tcagtacgta tatgaccacg attgtatcgg cagccagcaa cgttacactc tacgtagaac      2100
     cgttgcggaa agtggataaa cctaaaggca aggagaaagg attcgtcaat gcacattcat      2160
     cggaatctga acagaaagcc gatcgtaacg tcaggaagga aagcggtggc gcaagtacag      2220
     tctatcaacc gaagccgtgc ctaatgtgca agaaagacgg acacaaagtg aaggactgca      2280
     tcagttttaa aaaattgtcg ctggaaaatc gctggaagac cgctcaacag ttgagtcttt      2340
     gccgtcgctg cctgattccg catggcaagt ggccatgcaa agccacagaa tgcggtgaaa      2400
     atgattgtaa agcgcgtcat catcggctac tgcatcctgg aaaccctcaa tcaccgactt      2460
     ccgaagcgac aacgtctacg agaggacaga ccacttccat tccgtcagca acagtaaacg      2520
     ttcatcgaca gctaccatgc ccggtgcttt ttcgcatact tccggtaacc ttatacggga      2580
     aaaaggtatc gatcaacacg ttggcatttc tcgacgatgg atcatcgtac acgttgatgg      2640
     agaagtcctt agcggacgaa ctaggtgttg aaggcgatac cgagccgctg tgtttgcagt      2700
     ggaccagcaa tattaagcga accgaatggg attcccaaaa cgtgcagcta gaaatctccg      2760
     ccgttggtaa gaatcaaaaa cattcgctgg aatttgtacg aacagtggag agtttgaacc      2820
     ttccaccgca atccttgcag tatgaagaaa tggcacagaa attcgaatat ctcaaggggc      2880
     ttccggtgga cagttatccc agtaccgctc cacgcatttt aatcggtgcc gataatgcaa      2940
     agctattatt aaccttaaag aagcgtgaag ggcggtataa tgagccagtg gcagcgaaaa      3000
     caaggctagg ttggactatt tacggaaaaa tgcaaggcct cgacggtaaa ccagaccatc      3060
     atcttcttca catatgtgag agatcgaacg atcagcagct tcatgacgca gtgaaggact      3120
     ttttcaccat cgaaaacgtc ggcgtcgctt tagctccgct cgtggagagc gaagaagatc      3180
     gaagatcgcg ggagatacta gaagcgacaa ccgtgcggac accatctgga cgtttccaaa      3240
     caggtttgtt atggaagttc gactacatcg agtttccaga aaaccgattc atggcagaga      3300
     agcggttgat gtgcctggaa cgaagtttag ccaagaaacc ggagctgtac gtcaaagttc      3360
     gtcaacaaat cctggattat cagacgaaag ggtatgctca caagcttacc gaagaagaat      3420
     caagtgacag cgatccaaga agagtctggt atttgccgtt gggggtggtg caaaccccaa      3480
     gcaagcctgg aaaggtcaga gtagtatggg atgccgcagc aaaaactggc ggcgtctctt      3540
     tgaactctat gctactgaag ggcccggatt tactcacatc tctgccatcc gtattgttcc      3600
     gtttccgtga gcgacaagtt gccataacag gcgacattaa ggaaatgttc caccagatcc      3660
     tgattcggcc agaggaccgg caatctcagc gcttcttgtg gcgggagaac tcagaggatc      3720
     ctatacagga attcgttatg gatgttgcaa cgttcgggtc tacctgttca ccatgctcag      3780
     cccaatacat caaaaataag aatgccgagg aatggaagaa cgtatatccg gaagctgctg      3840
     cagctatcgt ggagaacaca tacgtcgacg actatgcgaa cagttccgac acggttgagg      3900
     aagcggttcg catagcccta gaagtgaagg agatccatgc aagtgcgggt ttcgagattc      3960
     gtaattggct ctcgaactcc cctcaagttc ttcaacgggt cggggagcaa agattgcaag      4020
     taacgaaatc cttcattgcg gagaagtcta ccgaatcgga acgaattcta gggatggcat      4080
     ggcaaccgga aagcgatgag ttcacgttcg ccttaaggtt gcgaaccgac gtgcagctac      4140
     tgttagcgga agagattatt cccacgaaac gtcaagtcct gcaagttgta atgagtatct      4200
     tcgatcccct gggacttgta gcagcattcg taatccaagg caagtgctta atccaggata      4260
     tttggagagc cggcgtgggc tgggatgact atattccaaa cgacttgctt cctcactggc      4320
     ggcgatgggt taatgtgctt caaaatttga accaagtgag gattcctcgc tgctactttc      4380
     ctggttatga tcctcgaagc ataggcagcc tagaactcca cgtgtttgtt gacgcgagtg      4440
     aaaccgctta cgcttgtgct gcctattttc ggattgtcga ccgcgggcaa gtgcgttgcg      4500
     cattagtgtc cgcaaaaaca aaagtggcac ccctcaatcc aatgtcggtc cgtcgactag      4560
     agctgcaggc cgcagtcatc ggagttcgtc tgatgaaatc ggttcagtcg aaccattcac      4620
     tacctatcaa acgtcgtgtc ctctggggtg actctaaaac agtccagtcc tggatacgtt      4680
     cagatcagcg aaagtaccgt caatttgtgg cgttccgagt cagcgagatt ttgaacgcaa      4740
     cgagcctgga agagtggaga tgggtcccca cacggctcaa tgtcgctgat gcagctacga      4800
     agtggggcaa aggactaagt ttcaacgcag attctcggtg gtttctcggg cctgaattcc      4860
     tttacgagga cgagtctaga tggccaaacc aagagtactc cccaccgaac actttggaag      4920
     aaattcgttc aattcacgct caccatcgtg taacttcgga tcctttgatc aactaccaac      4980
     gattttcgaa ttatcaacgg ttgctacgga cggtcggata cgttctccgt ttcattgatc      5040
     gctgccgaag aagatcgatc acactttctg atatggacgt actttcgaga gaggaattgt      5100
     tgaacgcaga aattgtgctg tggaagttgg ttcagcttga agaataccct gatgaagtag      5160
     ctacgatccg cagaaacaaa tctctacggc cggaacaagc gatacgattg gaaaagggaa      5220
     gcccgttgcg caaactgtca gcatttctcg acgaccatgg agtgctgcga atcgaaggaa      5280
     gaattgatgc ggccgaattt gtcccatacg gacccaagca tccggtaatt ctccctaagg      5340
     cgcaccgttt tactgagttg ctagttctac gatttcacca gcggtatgcg cacggttatg      5400
     gagaaactgt gatcaatgaa ctgaaacaga tctaccacat ccccaacttg agaactgtag      5460
     ttcgaaaggt tgcgagaaga tgttcttggt gcattgtcta tcgagctgtt cctaagacac      5520
     cgcggatggc accgcttcca gccgctagag taacaccgta tgttcggcca ttcaccttca      5580
     tcgggattga ttattgtgga cccttcctaa ttcgcattgg gcggagtaac gtgaaaagat      5640
     gggtggtact tatcacctgt ttgaccatac gggctgtaca tttggaagta gcgtgcagct      5700
     tgtccactga atcgtgtaaa tggcgataag gcggttcata gctaggagag gagctccgct      5760
     ggaaatttat agtgaccagg gcacgaactt cgtaggagct agtaaggagt tgcggacaga      5820
     atcaacggcg gtaaatcgtg ccttggctga atcatttacc aatcgtgaaa cacagtggcg      5880
     tttcaaccct cctgctgccc cacatatggg tggcgtgtgg gaacgtatgg tgcgaacagt      5940
     gaagaattcg ttggagacat tatcgaccaa cagaacacca gacgaggaga cgttccagac      6000
     ccttttgatt gaagttgaag gaataatcaa ttctcggccg ttgacgtttg taccattggg      6060
     aactgaagaa gaggaagctc ttacgccaaa tcatttcctg atgctcagtt ccagtaatgt      6120
     aaatcaacct ccccaggagc cggtggctga taccgggcga acactaagga ctaattggga      6180
     ccaaatacgg agcctgttgg atcagttttg gaagaagtgg ataaaaggat acctcccaac      6240
     tatctgccgc cgtacaaaat ggttcgacga caccaaaccg gtgaaggtcg gagatttggt      6300
     ggtggtggtc gaagaatccg tgcgaaacag ttggatgcgc gggaaggttg tgaaggtgtc      6360
     tcccggcaaa gatggaagaa tacgagaagt agaggtgcag actacgaaag gagtatttcg      6420
     gcgtcctgtt actaaagtgg ccgtgcttga tgtggcagtc gatggcatag ctgaggaaca      6480
     ccgagcagca atacgggtcg gggaa                                            6505
//
ID   BEL-188_AA-LTR repbase;    DNA;    INV; 494 BP.
XX
AC   supercont1.88;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-188_AA_;
KW   BEL-188_AA-I; BEL-188_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.88; Positions 1280214 1280707.
XX
SQ   Sequence 494 BP; 212 A; 90 C; 78 G; 114 T; 0 other;
     tgtggatgag cccaccttga gcactaccac ttctctggtc actaaaaggg attaccttcc        60
     atacaaactg cgacctacga agcattgagt gaaggtcgca caaaacaaaa acaaaaacga       120
     tagacagata acgggagtta aaacgaaacg tggtacaaca aattattctc tttaaaatct       180
     cactaaatta cttaaattaa ctaattgaat tcgacgataa ttgtaagtac aaacacaatg       240
     ttattaaaat taaaatgaaa tataaataat gaatacgtta acacacagat taaaagtcat       300
     atgagcgttg cggtcagata gacaggcagg aaaacagaat taaaagagac tagaaacgta       360
     agtaataaca gacaacattt ataaaattat aaaactaatc aaaataaaaa atccgcagct       420
     taaagcattt cccagaaaaa cctggtgtgc taaaaaggcg tccgaaaagt cttgccatct       480
     aatccaccgt aaca                                                         494
//
ID   BEL-189_AA-I repbase;    DNA;    INV; 6009 BP.
XX
AC   supercont1.85;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-189_AA_;
KW   BEL-189_AA-LTR; BEL-189_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6009
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.85; Positions  975534  981542.
XX
CC   'GTGAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(498..4085,4089..5984)
FT                 /product="BEL-189_AA-I_1p"
FT                 /translation="MQLRSGLKKNLFFTPTGSSSPSVVRIGTPVSSVREQL
FT                 EKQKAEKERCRMAENVAALSRCCETTRAKVGRIREAIAVADLDHKKFSVHA
FT                 LKLYLKTTDSAYEEYNGFQNRIYLADPSRKEEFEPIFIEFEELYKFTRIAL
FT                 CEMLQAYEDEEKAILSVAAQSAAGNVSDSGLKGSNHQAGCSSSGVPVAFPP
FT                 TLVLQQVALPTFDGRYENWFKFKQMFCDIADKCTADSAATKLHFLDKALIG
FT                 KAQGAIDPQIIRDNDYQEAWRSLTQQFENLPALINGTTTRLLNVKQMVNES
FT                 FAQLKGLLDEVEKCVSSLEYHNLKMDKLSEAIITSLIASKLDMATRKVWES
FT                 SVTRGQLPEYKKMISVLRNQQAVLERCERAKPALKIRNSNSASKTQSSFAP
FT                 MKTHTATVGKRNDTCTLCNGEHQIEKCDAFLKLNVNARYGKAKHFGLCFRC
FT                 LKRGHRTAECKVEKKCSVCSRGHHLLMHPECKNESEKPMKDTAVDATGATN
FT                 AVGKEESTSANCSLLCNANETKNQVLLATAIVNVIDACGVQHKCRALLDSG
FT                 AMANFMSQRLADLLNLEKKAANVPVVGVNGMKTIMKFKVEAKVLSRVTEYG
FT                 FSLDYLVVPKVTGTLPPAGVDVDRWPIPTNLTLADSSFFEPSRIDLLIGAE
FT                 VFFELLRSGKITMAAELPILQESMLGWLVSGRVSECPSTGTVRVCHAQPIP
FT                 SAKMELSMLLRQFWSIDEQDFPITNHQASFDCEQHFLKTHSRNESGRYVVR
FT                 LPFRTNPSELGQSRQQAEKRFFALERRLDRNSDLKQQYKAFIEEYISLGHA
FT                 REVHEADEEAFYLPHHCVLKPDNSTTKLRVVFDASARSSTNLSLNDIMMIG
FT                 PTVQRSLFDIVLRFRCHRYVFTADVQKMYRQVMVHEDDQKYQRIVWRDNRE
FT                 QELKTIQLSTVTYGTAAAPFLATRSLNQLTLDEQSDFPEASDAVLNGFYVD
FT                 DALAGADGLDQTQKLQGDLIEMLDRGGFQLHKWCANDSALLQKIPVEARAK
FT                 ELDFETCKEGESVKTLGLLWNPVNDVFMFRVSPFKMSSQLPTKRQIMSDVA
FT                 RLFDPLEYLGPTVVIAKLVMQQLWKEKVGWDDPTTAEVMETWERFRSELCE
FT                 ISGLKIPRRVTVNGTMSYEIHGFADASMKAYGCCIYLRCLKSDDTAEMSLL
FT                 CSKSRVAPVKELNREWKGDEKPEEMTIPRLELCAAKLVEQAVKVLNAIQLD
FT                 VRRTVLWTDAKIVLAWIRRLKPDAPIFVRNRVAVIQQLSGNFEWRHVPTTT
FT                 NPADHISRGLYPVKLMTCELWWHGPGFLRASINAEPPQYDEDEADEYNVGD
FT                 HEDTLAAIVDTNLNPPLEAINRCSDYRKLQRIFGYMSRFLYNCRSKLGDRR
FT                 QGPLSVGDLRKAEMLMVRVVQLASYEEEIVCIQNNRSVKSKLRNLNPVFDE
FT                 NERMLRGGGRIRHSNLPREQKHPLILPEGQHLTEILIDALHRENLHIGRNG
FT                 LLSVIRKRFWPVNAKRVVYRVLKRCVRCFRVKPTDVQQFMGDLPSYRVTEA
FT                 LPFSRTGVDYAGPLLLKQGRMKSPVKAYIALFVCMTTKALHLELVTSLSTE
FT                 SFLAALHRFVGRRGNVSEMRSDQGTNFVGEDHQLKEFYDMLTSQLMQKKIA
FT                 EFCQVRCIDWKFNPPKAPHQGGLWEAGVKCVKYHLHRVLKEAYLNYEEMNT
FT                 LLVQIEAILNSRPLCQQSDDPCDYQALSPAHFLIGRELTAVAEPLYQRLRE
FT                 SSLSRYQLVQKHKQTFWRRWSNDYVTEQQRRGKWNKSPSPIKNGMLVILKE
FT                 ENMPPQTWRLGRIDDVYPGSDGVVRVVKIRTSNGSTFDRPTTQIAILPIED
FT                 NEEPNI"
XX
SQ   Sequence 6009 BP; 1723 A; 1247 C; 1548 G; 1491 T; 0 other;
     tttggtcact tcgatcctga taaagtaacc gcgagtggtt gagttgtatg gacgcgccgg        60
     ataaaagaaa ttaagttttg tctgctgaag caccaaaatg gactcatccg gtgacatgtg       120
     gtttcgagaa gagtagcaaa ttttggaagt ttgctagtga ttcaagaatt gagaagatat       180
     tgtgaaacac ttagtttgtg tggattctga acattttgac ggacgttgtg gccacgttga       240
     agagtgcccc gcaacgaacg attcctctga tcgcgatgaa agtgatgctg gatctgcatg       300
     agagcagtcc tctgcaaatt gtgacagtga cggtgatcga ggacaatgaa ctgggaagct       360
     tcaaagtgag ataagtccat aaactaagta gtttgaaact tgattcggtg agtttcgccg       420
     aaaagtgacg ttggaggtac ataacctcta acgaagaaga aagacaaaca attgaaaaga       480
     agaagcaata caaagtgatg caactgcgat ccggtttgaa aaagaatctg ttcttcactc       540
     ccactggaag ctcaagtcct tctgtagtta gaattggcac gcccgtttca tctgtgcgag       600
     agcagttgga gaaacagaag gcagaaaagg agcgttgtag aatggccgag aatgtggcgg       660
     ctttatctcg ctgttgcgaa acgacaagag ccaaggtggg acgtattcgc gaagcgatag       720
     cagtcgctga tttggaccac aagaaattca gtgtacacgc gttgaagtta tacctgaaga       780
     ccactgattc agcgtacgaa gagtataatg ggttccagaa cagaatctac cttgccgacc       840
     cttcgagaaa agaggagttc gagccgatct tcattgagtt tgaggaatta tacaagttta       900
     cgcgtatcgc tttatgcgag atgctgcaag cttatgagga tgaagaaaaa gcaatactct       960
     ccgtagctgc tcaatccgct gcaggaaacg tttctgactc tggattgaag ggaagtaatc      1020
     accaagctgg ctgtagctct tctggtgtac ctgtggcctt tcccccgact ctcgtactgc      1080
     aacaagtagc gctcccgact tttgatggtc gctacgagaa ttggtttaaa ttcaagcaga      1140
     tgttttgcga cattgctgac aagtgtactg ccgattctgc tgcaactaag ctacacttcc      1200
     tcgacaaggc tctaatagga aaggcacagg gagcaattga tccgcagata atcagggata      1260
     atgattacca ggaagcttgg cgctcgttga cccagcaatt tgagaacctt cctgccttaa      1320
     tcaatggcac cactacgagg ttgttgaatg taaagcagat ggtgaatgaa tcatttgctc      1380
     agctgaaagg cctgttggat gaggttgaga agtgtgtgag ctctctcgag tatcacaatt      1440
     tgaaaatgga caagttgtca gaagccatca tcaccagtct tatcgcttca aagctggata      1500
     tggctactag gaaggtgtgg gaatcgagtg tcacacgcgg acaacttccg gaatacaaga      1560
     agatgattag tgtcttgaga aatcaacaag cagtactcga gcgatgtgag agagcaaagc      1620
     cagcattgaa aattcgaaat tcgaactcgg cgtctaaaac acagtcttcg tttgctccta      1680
     tgaagaccca taccgcaaca gttggaaaaa ggaacgacac atgtacgttg tgcaatggtg      1740
     aacaccagat tgaaaagtgc gatgctttct tgaaactgaa tgtgaacgct cgttacggga      1800
     aggcgaaaca tttcgggcta tgcttccgtt gcctaaaacg gggccatcgc acggcagagt      1860
     gcaaggtgga gaaaaagtgc tcagtatgtt ctcgtggaca ccacttgttg atgcatccag      1920
     aatgtaagaa cgaatcggag aagccaatga aggatactgc agttgatgcg acgggtgcaa      1980
     ccaatgctgt tggcaaagaa gaatcaacgt cggcaaattg ttctcttctg tgtaacgcca      2040
     atgaaaccaa aaatcaggtt ttgttggcaa ctgcgattgt caacgtgatc gacgcttgtg      2100
     gagtccagca caagtgccgt gctctactgg attcgggtgc aatggctaat tttatgtcgc      2160
     aacgcctcgc tgatttgttg aatctggaga agaaagccgc aaacgttcct gtagttggcg      2220
     tgaacggcat gaaaacgatt atgaagttca aagtggaagc taaagttctg tccagagtaa      2280
     cggaatacgg tttcagtttg gattatcttg tggtaccgaa ggttaccgga acgctgcccc      2340
     ctgctggagt ggatgtcgac cgttggccga taccaacaaa tttgacactg gccgactcgt      2400
     ccttcttcga acccagccga atcgatttgt taattggagc ggaagtgttc tttgaattac      2460
     tacgaagtgg caagataacg atggctgctg aactacccat tctgcaagag agtatgctgg      2520
     ggtggctggt gtccggacgt gtatctgaat gtccatcaac gggtacagtc cgtgtatgcc      2580
     atgctcagcc gatcccttcg gccaaaatgg agctttctat gctattacgg cagttttggt      2640
     cgattgacga acaggatttt cctattacca accatcaagc aagcttcgac tgtgagcaac      2700
     acttcttgaa gacgcactcg cgaaacgaat ccggacgcta cgtggtacga ttaccatttc      2760
     gtacaaatcc aagtgaatta ggacagtcga gacagcaagc tgagaagaga ttttttgctt      2820
     tggagcgcag acttgatagg aattctgacc tgaaacagca gtacaaggcg tttattgaag      2880
     aatatatttc gcttggccat gctcgtgagg ttcatgaggc tgatgaagaa gcattctatc      2940
     tacctcacca ctgtgtgctt aaaccggaca actcgacaac taagttaaga gttgtatttg      3000
     atgcatcggc ccggagttcc accaatctat cattgaacga cattatgatg attgggccca      3060
     ccgtacagcg ttccttgttc gatatagtgc tgcgttttcg atgtcacagg tacgttttca      3120
     ccgccgacgt gcaaaaaatg taccgccagg taatggtaca cgaagatgat caaaaatacc      3180
     aaaggatcgt gtggagagac aaccgtgagc aggagttgaa aacaatccaa ctttctacgg      3240
     ttacgtatgg tactgctgca gcaccctttt tagcgacacg gtcgctgaat caattgactt      3300
     tggatgaaca aagcgacttt ccggaggcga gcgacgcagt gctgaacggt ttctatgtgg      3360
     atgacgcgct cgctggtgct gatggtctag accagacaca gaaactgcaa ggtgatttga      3420
     tagagatgct ggatagagga ggatttcaat tgcacaaatg gtgtgcaaac gattctgcgc      3480
     tcttgcagaa gattcccgtt gaagctcgtg cgaaggaact cgattttgaa acctgcaaag      3540
     aaggcgagag tgttaaaacg cttggtttac tatggaatcc agtgaatgac gtgttcatgt      3600
     tccgagtatc gccattcaaa atgtcgtcgc agttgcctac aaagcggcag attatgtccg      3660
     acgtagcccg tttgttcgac ccgctcgagt acctcggacc aactgtagtt attgcaaaac      3720
     tggtgatgca gcagctttgg aaggagaagg ttggttggga tgatccgacc acagcggaag      3780
     tgatggagac gtgggaacga ttccgctccg agttgtgtga gataagtggt ctgaaaattc      3840
     caagacgtgt gactgtgaat ggcacaatga gctatgaaat acatggcttt gcggatgcgt      3900
     ccatgaaagc gtatggttgt tgcatatatt tgcggtgcct gaagtcagac gatactgcag      3960
     agatgagcct attatgcagc aagtccagag ttgcacctgt aaaggagcta aaccgagaat      4020
     ggaaaggtga tgagaaacca gaagaaatga ccatcccgcg tttagaactt tgcgcagcga      4080
     agctttaggt ggaacaggca gtaaaggtgt tgaatgcaat tcaattggac gttcgtcgta      4140
     cggtattatg gactgatgca aaaattgtat tggcttggat tagacgtttg aaaccagatg      4200
     caccaatctt cgtgcgtaat agggttgctg tgatccaaca gctgagtgga aattttgaat      4260
     ggagacatgt accgacaaca acgaacccag cagaccacat ctcacgcggt ttgtatcctg      4320
     tcaaactaat gacgtgtgaa ctgtggtggc acggaccagg ctttcttcgt gccagcatta      4380
     atgcggaacc gcctcagtac gatgaagacg aagcggatga gtataacgtt ggtgatcatg      4440
     aggacacact tgcggctatc gtagacacga acctaaaccc acctttggag gctatcaata      4500
     gatgcagtga ttataggaag ctgcagagaa tttttggata catgtcaaga ttcctataca      4560
     actgtagatc taaattaggc gatcgacgac aaggaccact tagcgttggc gatctgcgta      4620
     aagccgaaat gttgatggta agagtggttc aattggcatc atatgaagaa gaaattgttt      4680
     gtattcaaaa caatcgttcg gtgaagagca agcttcgaaa cctcaaccca gtattcgacg      4740
     aaaatgaacg gatgcttaga ggtggtggac gcattcgtca ttctaactta cctcgggaac      4800
     agaagcaccc tctcattcta ccggaagggc aacatcttac ggaaatccta attgacgctc      4860
     tacataggga gaatttgcac atcggacgta acggactact ttccgtgatc agaaagagat      4920
     tctggccagt taatgccaaa cgagtcgtct atcgagtgct gaaaaggtgt gtgcgttgct      4980
     tccgggtgaa accaactgat gtccagcaat tcatgggtga cttaccaagt tatcgcgtga      5040
     ctgaagccct tcctttttcg agaactggtg tggactacgc cggtccatta ttgttgaagc      5100
     aaggtcggat gaaatcaccg gtgaaggcgt atattgcatt atttgtatgc atgacgacaa      5160
     aggcactgca cctcgagctg gttacgtcat tatcgacgga gtcgttcctg gctgcactgc      5220
     acagatttgt tgggcgaaga ggcaacgttt cggaaatgag atcagatcaa ggcactaact      5280
     tcgtaggtga agaccatcaa cttaaagaat tctacgatat gcttacgtcg cagttgatgc      5340
     aaaagaagat tgcagaattc tgtcaagttc gatgcatcga ctggaaattt aacccaccca      5400
     aggcgccaca ccaagggggt ctatgggaag caggggttaa atgtgttaaa tatcatttgc      5460
     atcgtgtttt gaaggaggcc tacctaaact acgaagaaat gaatacattg ctggtacaaa      5520
     ttgaggctat tctaaattcc cgccctttgt gtcagcaatc cgatgaccct tgtgattacc      5580
     aagcattaag tccagctcat ttccttatcg gacgtgaact tactgctgta gcagagccac      5640
     tttatcaaag actacgagag agttcactat caaggtacca actcgtgcag aagcataagc      5700
     aaaccttttg gcgtcgttgg tccaacgact acgtaacaga gcaacaaaga cgaggaaagt      5760
     ggaacaaatc accatctcct atcaagaatg gaatgttggt tatactgaag gaggagaata      5820
     tgccacccca aacctggcgg ctcggcagaa ttgatgacgt ttatccagga agcgacggag      5880
     tggtacgagt agttaagatt cgcaccagta acggctctac attcgaccgc ccaacaacgc      5940
     aaatagctat tcttcccatc gaggacaacg aggagcccaa tatttgagcc cagctcaacg      6000
     gggggtgga                                                              6009
//
ID   BEL-189_AA-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   supercont1.85;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-189_AA_;
KW   BEL-189_AA-I; BEL-189_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-250
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.85; Positions  975284  975533.
XX
SQ   Sequence 250 BP; 92 A; 40 C; 40 G; 78 T; 0 other;
     tgttgagtgt aattaaaaaa aaaaacgtat ttttttatta ctgtgcacac cgctcaagct        60
     ttcttgacat ctgaaatttt acttgaattt gtttttgttt ccgcttgaac gtgcgcaaga       120
     ttctaagaca gaatataaaa gccagtcaaa caaaaatggc gaaaaaactg tgtgctcaaa       180
     taaatactaa ttaatacagt ccattataaa gtcggaattg gattttatac gattgacgaa       240
     accacgaaca                                                              250
//
ID   BEL-18_AA-I repbase;    DNA;    INV; 3186 BP.
XX
AC   supercont1.352;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_AA_;
KW   BEL-18_AA-LTR; BEL-18_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3186
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.352; Positions    1774    4959.
XX
CC   'AGATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1244..3184
FT                 /product="BEL-18_AA-I_1p"
FT                 /translation="MAKYPNETSAMKILHLRNSLEGDAKCKIDQDVMNNND
FT                 YERAWKILEDAYEDKRLILDTHIDAILDCAVISSDNRGKSISQLVETCSKH
FT                 VDALDGHSYPVEGLGELILLNVLYKKLDKETQEQWEMKIPRGEVPEYETFM
FT                 EFLRERGRVLQRTNRSQQQVQQSTVQAKQRVAGIKAPTQALKSFMQTGSEA
FT                 CPCCPEEHAIYRCMKFQDMNFSERKSVAARMSLCYNCLKLNHRVNDCQSNQ
FT                 RYKVQGCGRKHHSLLHPEIWQNSVERSPTPEVDKDYESNQQEPDGRRATTM
FT                 CALIDTTKRQVLLSTAEVLVVGHGGFTIKCRALLDSGSDSHILTERLANKL
FT                 RLKMKRVDFPISGLNDIQTRVKYLVSTKIRSRINTYATSDLNFLVVPRISA
FT                 RLPQVEIKSGSCRVPTGLQLADPSFHVPGEVDMIIGNEIFFDLVKAGRLKI
FT                 ENTAITLAETEFGWIAGGSAQLKKDAPRAVQCQLNYRTQVGKIMEKFSEIE
FT                 NDPLGIKSAAVDSAVKKRARNGRRRGVQQLSFNGKRYQLGDSFVMTRNRCE
FT                 PSIYSSSGKRIWCNEFKANPYDAAKSKTLLVKHGVTRRDLQEQQLVNEMVR
FT                 EKRDVLVEDSPFPASAGTVTRMSERLQPGRSIKSEVVTVLLSQRAQRGV"
XX
SQ   Sequence 3186 BP; 906 A; 646 C; 887 G; 747 T; 0 other;
     tttttggtcc ttcgagccgg atgttgtgag tggttttccc ggatgttgtg tccggaagtt        60
     gttgctgttt cgtgtgtgga agaagagcac caagtgcaca agtgcggtcc gtgaccgaat       120
     gatacaagac gattatgtcc gtggcatagt gcgtgttcgg aaaaatttac tgcatcgtgt       180
     gcagaagcgt gacccgtggc caaatcggaa ttcacgtcga tccgtgatcg atgattggtt       240
     gagattgtgt ccgtggcatg atccgacgta ccgtgtgcgt agtaccaatg gctgtaggca       300
     gtttgaattt ccggaagtta attgcatcgt gtgcagtgga atagcccgtg gctattagcg       360
     aacaatgtat gaagtggccc gtggccaaag acaatcagtg agcgtgtacg tggcgtgatg       420
     ttgcccggcg agtgcttcgt gttgcccgtg gctgagttta ggaatgcaca gtggcacagg       480
     agtaagtgaa cattcgtgcg caccggttac gtattttggc taaaagccaa ggaagaaaca       540
     gttccaaaac gtttatcggg ttcgtgacac gcgtggtgag ttggatgtgt ccgtgacgct       600
     ttgcgagctc gattgaacag gagtgaacaa gttcgaacat gagcgataat gaaacaccgc       660
     gtggagtgtt aaaaggcgta tcgaaaaaga accttttaga agcgcttacg gaatcacgta       720
     gtgaaaacgt gcctcccgtt ccgtcagtgg cagatcaaaa gattgcgaag caagtgttcg       780
     agcaaaagaa gatgatggag tccaagttgg aagtgctgac agatcggcga gatctgataa       840
     cggagaagct gatacgaatg aaggagtctt tgcgagggga aggtgtgagc atacatttgc       900
     tcaaccttca ctttgaaaca ctgcgacgat gtgcggatga attcgacagg attcatagcg       960
     aaatctcggc attgctgccg agaaaacagc gaaccgtagt acgtcaggag tacgcggtat      1020
     tcgaggatat ccacaacgaa ctttacgtag acttgcagac aagaattgca cgaacgcaag      1080
     aagcatgtcg cgtaacttca ggtacgtcaa gtagtttaag cattccaggt tccagcagcc      1140
     gattgtagtg caagcagctg ccccgcagct acacgctccg ttcccgaaat tcgatgggac      1200
     accggagaat tggtacagct ttaagagcct cttcaagagc attatggcaa agtacccaaa      1260
     cgagacttca gcgatgaaga ttttgcactt gcgcaattct ctcgaaggcg atgcaaagtg      1320
     caagatcgac caagacgtca tgaataacaa cgattacgag agggcctgga agattctcga      1380
     ggacgcgtat gaggataagc ggctgatact ggatacgcat attgacgcta ttctggattg      1440
     cgccgtcatc agcagtgaca accgtgggaa atcgatttca caattggttg aaacttgttc      1500
     gaagcatgtt gatgctttgg atggtcacag ctatcccgtc gaaggtttag gggagttgat      1560
     tctgcttaac gtcctctaca agaagcttga caaggagacg caagagcaat gggaaatgaa      1620
     gatacccaga ggagaggtac cagaatacga aacgtttatg gagttccttc gtgaacgagg      1680
     acgcgttctg cagcgtacga accgctcaca gcagcaggta cagcagtcaa cggttcaagc      1740
     gaaacagcgt gttgctggta tcaaagcgcc aacacaagca ttgaaatcgt tcatgcaaac      1800
     gggtagcgaa gcgtgtccat gctgtccgga agagcacgcc atctacagat gtatgaaatt      1860
     ccaggacatg aatttctcgg agcgcaagtc cgttgccgca aggatgagct tgtgttacaa      1920
     ctgtttgaaa ttgaatcatc gagtcaatga ctgccaatcc aatcaacggt acaaggtgca      1980
     aggttgcggt cgtaagcatc atagcctttt gcatcccgag atttggcaga atagtgtaga      2040
     gaggtctccg acgccagaag ttgataaaga ttatgagtca aatcaacagg agccagatgg      2100
     tcggcgtgcg acaacgatgt gcgcgctgat tgatacaacg aagcggcaag tgctgctatc      2160
     aacggcagag gtcttggtgg tcggacatgg aggtttcacc atcaagtgcc gtgccttgtt      2220
     ggattcagga tccgatagcc atattcttac ggagagattg gccaacaaat tgaggctaaa      2280
     gatgaaacgc gtcgactttc cgattagcgg tctcaacgac atccagacca gagtgaagta      2340
     tctggtatcg acgaaaattc gctcccgaat caatacgtat gcgacgagtg atttgaattt      2400
     cttggtcgta ccaagaatct cagcaaggct tccacaggtg gaaataaaat ccggttcttg      2460
     tagggtaccg acaggtttgc agttagcaga tccatcgttc catgtaccag gagaagtgga      2520
     tatgattatc ggcaacgaga tattcttcga cttggtgaag gctggacgcc tgaaaataga      2580
     gaacactgcg attacgttgg ctgaaacaga gtttggatgg attgctggag gatcagcgca      2640
     gttgaaaaag gatgcaccac gtgcagtaca atgccaacta aattatcgca cacaagttgg      2700
     caagatcatg gaaaagtttt ccgaaatcga gaacgatcct ctcggtatta aatcagcagc      2760
     ggtcgattca gctgtcaaaa agcgtgcgag aaatggacga agacgtggtg tacaacaact      2820
     ctcattcaac ggcaaaaggt atcagcttgg tgattctttc gttatgacga ggaaccgttg      2880
     cgaaccatca atctattcat catctggaaa acgaatatgg tgtaacgaat tcaaggctaa      2940
     tccgtatgat gcagcaaaat cgaaaacgct gttagttaaa catggagtga cgcgaaggga      3000
     tttacaagag caacaattag tgaacgaaat ggttcgagag aagcgagatg tgttggtaga      3060
     agatagtccg tttccagcat cggcaggtac tgtaacgagg atgagtgagc gacttcagcc      3120
     tggacgatcg atcaagagtg aagtagttac tgttttgttg agccaaaggg ctcaacgggg      3180
     ggtgta                                                                 3186
//
ID   BEL-18_AA-LTR repbase;    DNA;    INV; 405 BP.
XX
AC   supercont1.352;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_AA_;
KW   BEL-18_AA-I; BEL-18_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-405
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.352; Positions    1369    1773.
XX
SQ   Sequence 405 BP; 138 A; 69 C; 94 G; 104 T; 0 other;
     tgtttgcgag aaaatgtaac gatgtgcaat tactgaggat aaattatgtt attgagatgc        60
     cgtcattgat ctttattaga acattttggt atcggcgcac cgcatgattg caagaaggca       120
     taggtaggag ctttttctgt gtagagtgtt tgcgcgccta gattgaaagc taaccagaag       180
     atgtgtagaa gagtaaaagt acagtccatt caagaaaaag ggaactgaag agcaagcatg       240
     aatgaacagg caacagtcca ctaacaggct tcgtgaagtt atgttctcac ggagaaatca       300
     aagtgaataa agtaaaagtt atattgaaaa tcaacccacg cgtttacagt tcaacttaat       360
     gccaatccgg tgaaaatcca aatcccctga gctgtcgtcg gaaca                       405
//
ID   BEL-18_AnFu-I repbase;    DNA;    INV; 6822 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6822
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 670-670 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1671..6749
FT                 /product="BEL-18_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MSIQKRTTREGGQDLLAMIMDLKQQLEDSKQQQLETE
FT                 KRMKDVQSGATADVAKLTAELIEVRSMLNDRKMGESVSKPEAVERLPDSGN
FT                 SELTEILRSVTQILKDGPRKPIIGLPEFDGKYQDWAKFKTAYDQTSKNEGL
FT                 TPIENLIRLQRSLKGDAAQCVNRLLTDPQNLGKIMERLEREYGSPDLVYAR
FT                 LLNDMLAVPNPTLDEPKTVINFMRLLDDMVTTMTALGRVNFLNDQRLLSDL
FT                 VKKLPAGMKHKWYNLVLKEEAEGGNISKTLGDFADWFRPQERLAMKLSVDV
FT                 NNDHTETEGTRSRNLPSNQNRVAGSRVHCLICFASHRTTDCRRFRDGSVNE
FT                 RWDIVRRLRICANCCLQDNHGAYNCTLAPQCREYNCRMRHHTMLHRRAPRP
FT                 ELTSSGTVNVHKRLAETYYQILPVTLSHGQRTSETFAFLDSGASVSLLLQE
FT                 EKEKLGVSGIKRPLTMSWTNGLSQEEPESEVVNIKIQGKEGSLHRLDGMRT
FT                 VNRMDLPTQSVDMSQLQSQYHHLRNLDMPNYHQARPTILLGLPHAHLICGF
FT                 QNRIGKLGEPTAVRTRLGWTIIGGQDGGRNTRPIFSAFEDESKEELSMDKM
FT                 MKEYFNADTFGVDPTATIPIAKDEERAVKIMESTMKRNEPGYEIGLLWKWD
FT                 IIKLPESYPQALRRLASFESKMECNQYLKDWFHAEISSYCEKGYAAPIGYH
FT                 EELPQNDRCNYIPYFAVVNHNKQNPKPRLVFDAAAKNNGVSLNSQLLSGPD
FT                 AVASLFGVLLRFRENSFGVSGDIREMFHRVKIRREDHCAQRFLYRRTPKER
FT                 PKVFVMKVMTFGATCSPACAQYVKNTNASSYKHIYPEAVESIVRNHYVDDY
FT                 LDSFTSEQEGIKHVNEVIEIHAKGNFFIRNFISNSAHILRGLPKDRVSEEH
FT                 KLEICSKSQEFEKVLGHYWDRSRDTLNYSLKFLQNKDTEVTKREVLSTTMR
FT                 IYDPMGLLANYLIESKLLLQDIWRLGVQWDAKLPAIIRKRWYEWLQSLEAL
FT                 NTWEMPRCYSTAHDIKTRELHVFVDASERAFAAVVYLKTIHANGVDIGLVA
FT                 AKSRIAPTKPMSIPRLELQAAVLGVRLAKTIKRELRLTIHEEIYWSDSKTV
FT                 LAWIASEPRKYKQFVALRIGEILSLSSVNQWRWVASGDNPADEATKFTTTT
FT                 KLTGSIWKHGPGFLKDPTLVAPELDLVTAEESRPILVLQVKDTRDWSIINV
FT                 TWTSDWKKLRKSLAIGLLYLEWLKSKVKHTPFSTVIDKQLLDRAESILFQK
FT                 AQWEGFKDEMWTLVTEGEVKRQSPIRNLNPTLSTEGVLKASGRLSASHHIA
FT                 ETIRCPIILPKRHNVTRLLVKSYHEKFFHKKFEAALAAIRQRYWVIDLRAE
FT                 LKRVKANCQWCKNESARPEAPMMAPLPPCRTAAFHKPFTHTGVDYFGPLTV
FT                 TIGRRSEKRWGALFSCMTTRAVHLELAKDLSSDAFFICLRSMQHRRGKIVH
FT                 IYCDNGTNFVGTSREMKRIKERTAEEGIEFHFNPPAAPHFGGAWERMVREV
FT                 KSLMPLGKESFPEYVLRATLVEIESIINSRPLTHIPLECDDEEPLTPNHFL
FT                 IGCHGEAIPSPNEISNGEALKSGWKRSRSVALHYWRRWIREYLPQLHKRDK
FT                 WQGMVSPLRAGDVVVFPNEQKAGKWQKGRIVEVHGSPDGQVRAVTVRTNNL
FT                 LIKRPAVRVAKLKLSQQEEEDKGS"
XX
SQ   Sequence 6822 BP; 2083 A; 1523 C; 1710 G; 1506 T; 0 other;
     atttggtggc tccagagagg agtgagcaag ctctccatct ttttattacc ttcggcgatc        60
     actcgccgta ggccacaaaa gaagttccgg caaacctgcc gaggcgatct gagaaggaag       120
     ttccggctaa cctgccgagg cgatcggaga gaaggaagtt ccggccaact ggccgaggcg       180
     atctgaggga cgaaggaagt tccggccaat cggccgaggc gatccaaggg aaggaggttc       240
     cggcaaacca gccgaggcga tccgaaggag gttccggcaa acctgccgag gcgatccaag       300
     ggaaggaggt tccggcaaac cagccgaggc gatccgaagg aggttccggc aaacctgccg       360
     aggcgatcca agggaaggag gttccggcca accagctgag gcgatctgaa ggagggaagc       420
     tccggccaac cggtcgaggt aatccgaggt tccggccaac cggtcgaggt aatccgaagt       480
     gccgaccaac cggtcgaggt aatccgaagt tccggccaac cggtcgaggt aatccgaagt       540
     tccgactaac cggtcgaggt aacccgaagt tccgaccaac cggtcgaggt aatctgaagt       600
     tccgaccaac cggtcgaggt aatccgaagt tccgaccaac cggtcgaggt aatccgaagt       660
     tccgaccaac cggtcgaggt aacccgaagc tccggccaac cggccgaagc aacccgaagt       720
     tccggccaac cggccgaggc aacccgaagt tccggccaac cggtcgaggt aatccgaagt       780
     tccgaccaac cggtcgaggt aacccgaagc tccggccaac cggccgaagc aacccgaagt       840
     tccggccaac cggtcgaggt aatccgaagt tccgaccaac cggtcgaggt aacccgaagc       900
     tccggccaac cggccgaagc aacccgaagt tccggccaac cggccgaggc aatccgaagt       960
     tccggccaac cggtcgaggt aatccgaagt tccgaccaac cggtcgaggt aacccgaagc      1020
     tccggccaac cggccgaagc aacccgaagt tccgaccaac cggtcgaggt aatccgaagt      1080
     tccgaccaac cggtcgaagt aatccgaagt tccgaccaac cggtcgaggt aatccgaagt      1140
     tccgaccaac cggtcgaggt aacccgaagc tccggccaac cggccgaggc aacccgaagt      1200
     tccggccaac cggtcgaggt aacccgaagc tccggccaac cggtcgaggt aattagaagt      1260
     tccggccaac cggtcgaggt aacccgaagc ttcggccaac cggccgaggc aatccgaagt      1320
     cctgcagtgt cagtgtagtg tttcggtgcg gttaatgtga ttgcgtagta agtagttgaa      1380
     gttacagtat atgtgcgaca aaaagtgagt gaagtgcgac aggaagtgaa aaaaaaaagt      1440
     gagtgatgcg attgaagcct aagatgttcg caagcggtct acgagtacga ggttagtaac      1500
     aaacaaaaaa aatcatttta ttatacgacc aaggattagg atagggaata attgtgaagg      1560
     tctcattacg cattcgttct ttattgtttt acaaacgttg attgcctgaa ggctgtgaat      1620
     ttttaactgg attttaattg gatcttatct agatcaacct taatttaaac atgtccattc      1680
     agaaacgcac gactagggag gggggtcaag acctactagc aatgattatg gacctcaagc      1740
     aacagcttga ggattcaaag caacagcagt tagagacaga gaaacgtatg aaggatgtgc      1800
     aaagtggggc tactgcagac gtagctaaac ttacggccga actaatagaa gttcgatcaa      1860
     tgttgaatga ccgtaagatg ggagagagtg tgtctaaacc ggaagccgtt gagaggctgc      1920
     ccgattctgg aaattcggag ttaactgaga tactgcgttc cgtcacgcaa atcctgaaag      1980
     acgggccaag aaaaccgata attggattac cggagttcga tggcaagtat caggactggg      2040
     ccaagtttaa aacggcgtat gaccaaacca gtaaaaatga gggccttact ccaattgaga      2100
     acctcataag actacagcgc agcttaaagg gagatgctgc gcagtgtgtt aatcggctat      2160
     taaccgatcc acaaaatctg ggcaaaatca tggaacgact agaaagggaa tacggaagtc      2220
     ctgaccttgt ctacgccaga cttctaaatg atatgctagc agtgcccaac ccgacgctcg      2280
     atgaacccaa gacagtaatc aattttatga gattgctcga tgacatggtt acaactatga      2340
     cagcgttagg acgagtaaac tttttaaatg atcagcgatt actaagtgat ctagtgaaaa      2400
     agcttcctgc cggcatgaag cataagtggt ataacctcgt gctaaaggaa gaagctgagg      2460
     gaggaaacat ttccaaaact ctgggagatt ttgcagattg gtttcgacca caagaacgac      2520
     tggcaatgaa gttgtcagtt gatgtgaaca acgatcacac cgaaacagaa ggcacgcgtt      2580
     cgagaaatct tccaagtaat caaaatagag ttgcaggatc acgagtccat tgtttgattt      2640
     gttttgctag tcataggact acagattgtc ggcgttttcg cgacggaagt gtaaatgaac      2700
     gatgggatat agtaaggcgc ctacgtatat gtgccaactg ttgtctgcaa gataatcatg      2760
     gagcgtataa ttgtacttta gctcctcaat gcagagaata caattgtcga atgaggcacc      2820
     ataccatgct acaccgtcga gcaccgcgcc ccgaactaac ttcgtccggc acagttaatg      2880
     ttcataaacg gctcgccgaa acctattatc aaatattgcc tgtcacttta agtcacggtc      2940
     aacggacgag tgaaacattt gccttcctag attccggagc atctgtaagt ctccttctac      3000
     aggaagaaaa ggaaaaactc ggtgtgtcag gtatcaaacg tccacttacg atgtcatgga      3060
     ccaatggatt atcacaggag gaacccgaaa gtgaggtagt gaatataaaa atacaaggaa      3120
     aggaagggtc acttcataga ctagacggaa tgcgaacggt taaccgcatg gatttgccga      3180
     cacaatccgt ggacatgtcg caattgcaat cccaatatca tcatttaagg aacttagata      3240
     tgccaaacta tcaccaggca cgaccaacca ttctactggg cttacctcat gcccacttga      3300
     tatgtggttt tcagaacaga ataggtaagc ttggggaacc aaccgcggtg cgtactaggc      3360
     taggttggac tatcatagga ggacaagatg gaggacgaaa cacaagaccc attttttcag      3420
     catttgaaga cgagagtaaa gaagagctgt ccatggataa aatgatgaaa gaatacttca      3480
     atgctgatac ctttggggta gaccccactg ctaccattcc tattgccaaa gacgaggaga      3540
     gagcagtaaa aataatggaa tctactatga agagaaacga accgggatat gaaataggct      3600
     tgttgtggaa atgggacatt atcaaacttc cagaaagtta tcctcaagct ttacgccgtt      3660
     tggcaagctt cgaatcaaag atggagtgta atcagtattt aaaagattgg tttcatgctg      3720
     aaatatcctc gtattgtgaa aaaggatacg ctgctcctat cggatatcat gaagagctac      3780
     ctcaaaatga ccgctgcaac tacattccat attttgcagt ggttaaccat aataagcaga      3840
     atcctaaacc aagattggtt ttcgacgctg ctgcgaaaaa caacggagta tcactaaact      3900
     cccagctact atcagggccc gacgcagtag cctctttgtt tggagtttta ttacgcttta      3960
     gagaaaattc tttcggagtc tcgggcgata tacgggaaat gttccacaga gtaaaaattc      4020
     gccgagagga tcattgcgcg caacgcttcc tctataggag gactcctaag gaaaggccta      4080
     aagttttcgt gatgaaggtg atgacctttg gagccacatg ctcacctgcc tgcgcgcagt      4140
     acgtaaaaaa tacaaatgca tcatcctaca aacatatcta tcctgaggca gtagagagca      4200
     tagtcagaaa tcattatgtg gatgactatt tagatagttt cacatcagag caagagggaa      4260
     ttaaacacgt taatgaggta atcgaaattc atgcgaaagg taatttcttt atcagaaatt      4320
     ttatctccaa ctccgcccat attttaaggg gcctacctaa ggatcgtgtt tcggaagaac      4380
     acaagttaga aatatgtagc aaatcacagg aattcgaaaa ggttcttgga cattattggg      4440
     atagatcgag agatacgttg aattactcac taaaatttct ccagaacaag gacacagaag      4500
     taacgaaaag ggaggttctg tctaccacta tgagaatata cgatccaatg ggactgttag      4560
     ccaactatct aattgaatct aaattgttgt tgcaagatat atggcgctta ggcgtgcaat      4620
     gggacgccaa attacccgcc ataataagga aacggtggta tgaatggtta cagagcttag      4680
     aagcgttaaa cacttgggaa atgccaagat gttactctac agcgcatgac ataaaaacaa      4740
     gggagcttca cgtttttgta gacgcctccg agcgtgcctt tgcagcggtg gtctatctta      4800
     aaaccatcca cgcaaacggt gtcgatattg gattggtggc tgcaaaatcg cgcatagcgc      4860
     ctactaagcc aatgtcaata ccaagactgg aactacaagc cgctgtgtta ggcgtaaggc      4920
     ttgccaaaac gattaaaagg gaactccgat tgactataca tgaggagata tattggtccg      4980
     attctaaaac cgtgctcgca tggattgcat cggagcctcg caaatataag caattcgtag      5040
     ccttacgaat aggggaaata ttaagcctga gcagcgttaa tcaatggcgt tgggtggctt      5100
     caggggataa tcccgcagat gaagccacta agtttaccac gaccactaaa ctgactggat      5160
     caatttggaa acatggtcct ggtttcttga aagacccaac gctagtagct ccagaactcg      5220
     atttggttac agctgaagag tcgcgtccca ttcttgttct acaggtcaag gatacgcgag      5280
     actggtctat aattaatgta acatggacct ccgattggaa aaaactaaga aaatcgttag      5340
     ccatcggatt attgtatttg gaatggttaa aatcaaaagt taagcatacg ccattttcca      5400
     ccgtgatcga caaacaactc ctcgacaggg ccgaatctat tctttttcaa aaggctcagt      5460
     gggaggggtt caaagatgaa atgtggacct tagttacaga aggtgaagtt aagcgtcaaa      5520
     gcccaattcg aaatctaaac cctacactta gtacggaggg cgttctaaag gcgagcggca      5580
     ggctaagcgc cagccaccat atcgcagaaa ccataaggtg cccaatcata cttcccaagc      5640
     gccacaatgt aactcgtttg ctcgtgaaga gctatcatga gaaattcttt cacaaaaaat      5700
     ttgaagctgc cttggcagcg attcgacaac gatattgggt gatcgatctt agggccgaac      5760
     taaagcgagt taaagcgaat tgccaatggt gtaaaaatga aagtgcgagg ccggaagcgc      5820
     caatgatggc ccctttgcct ccgtgtagaa ccgctgcctt ccataaaccg tttactcata      5880
     caggagtgga ctactttggt ccgctcacgg tgacaatcgg aagacgtagc gaaaagagat      5940
     ggggagctct attctcttgc atgactacta gagccgtaca cctggagttg gctaaagatc      6000
     tcagttcaga tgcgtttttt atttgcttac gcagcatgca gcacagacgc ggcaagatag      6060
     tgcatattta ttgcgataat ggcacaaatt ttgtaggaac gtccagagaa atgaaacgca      6120
     ttaaagagcg aacagccgaa gaaggtatcg aattccattt caatccaccc gcagctccgc      6180
     atttcggtgg tgcgtgggag cgaatggttc gcgaagtcaa gagtttaatg ccactgggaa      6240
     aagaatcctt tccagaatat gtcttgcgag caacattagt ggagattgaa tccatcatta      6300
     acagccgccc actgactcac attccacttg aatgtgacga tgaagagccg ttaaccccaa      6360
     accattttct aataggatgc cacggggaag caatcccatc accgaacgaa atatcgaacg      6420
     gtgaagcctt gaaatcgggc tggaaaagat cccgatcggt tgcccttcat tactggcgaa      6480
     gatggataag ggaatattta ccgcagctgc ataagcgaga caaatggcag ggaatggttt      6540
     cgccgttaag ggcaggggat gtagtcgtgt ttcccaatga acaaaaggcc ggcaaatggc      6600
     agaaaggaag aattgtggaa gtacacggaa gtccagatgg acaagtaaga gccgttaccg      6660
     ttagaacgaa caacttatta ataaagcggc cggcagttcg agtagcgaaa ctaaagttat      6720
     cacagcaaga agaagaagat aaagggtctt aaacagtgaa caattctgcc agactccatt      6780
     ttttttgtgt aacacctcta cgaggaatta cgggggggag ac                         6822
//
ID   BEL-18_AnFu-LTR repbase;    DNA;    INV; 497 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-497
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 722-722 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 497 BP; 150 A; 99 C; 116 G; 132 T; 0 other;
     tgtcgctgac agaatgcgca ggaagaaata tataaataaa catttaatta attcattaaa        60
     catttaatta attaaatgtt tatttagaac tggcggtaga ataccccctt aacaccttct       120
     gcgtgggccg atacgctcgc ttctgtgtgg gtgggtggtt gcccgctcaa tcactgctag       180
     tatgagcggg atggttaatc ctctagccta gcgtgcaaag taaaggacga atgcgtaacg       240
     aatcctatag tagaccgcag tagggaaaat gcgtaatctg ttagggacag taggaaacga       300
     acattatcca tcgctagcgc ggcgtgttac tgtcgcacgt cgacgcatta attaatcgaa       360
     ataaagatgc ctttttactt cactcaaaaa tcgtgtatgt ccttatgtgt ttctaacgag       420
     aaagtgattc ggccacaaga gaagcgttgc tcactggagg aggcaagcat caaagaatag       480
     tgcctgcgaa ctctaca                                                      497
//
ID   BEL-18_CQ-I repbase;    DNA;    INV; 8327 BP.
XX
AC   AAWU01035939;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_CQ_;
KW   BEL-18_CQ-LTR; BEL-18_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8327
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 189-189 (2011).
XX
DR   Genome; AAWU01035939; Positions   10894   19220.
XX
CC   'AACCG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..1626
FT                 /product="BEL-18_CQ-I_1p"
FT                 /translation="MATFPQEMILRPCKICQQDGRPDNMMLCFSCKGWFHP
FT                 RCLGPGEKLFIGSWTCAACVAAAELPASESTTIAPNTVQTETSATATKAPA
FT                 GSILTEKAKADLLWIAEQREYVLREVERQRLELDQKKEEMERLSREAAQML
FT                 SMNLQAVQSTSGQQSSANSSEGWVQRIMEEIKNISIGTPGPTGHDTQTSGY
FT                 MHSSTPTKAANIGTLPTNVGTFTVLNRPTIPSTGYSCGTDSFLSLPEHQQQ
FT                 TSQQQPPPQPPHGLSQTWPHPQQTWTHSQQGGYQSNQAWPQPQTSGPQPSA
FT                 PQPHQDAPNTHRSGPEQAWPQPQQVDHQPQPGRSQQLAPQPTQAWQQSQPG
FT                 GQQQVAPQRQQAWPQPQLGRSQQSAPQPQQTWSQPPQGGQQQGPQQPQPQQ
FT                 VQPQPQQAWSQRQQAWPQPQPAWQQPQPNWPQPQQGWPQPQQVWPQHQQDW
FT                 LQQGLQHMGQTPQDWTPPHVQHRSSYWPDRSCQRIYLNFMETQRNGHSSSL
FT                 RLLTPPTLAVIQTWRTWHAFSRRCKEELWNR"
FT   CDS           1167..2165
FT                 /product="BEL-18_CQ-I_3p"
FT                 /translation="MVATTTRRTTTGTTAAAASTGSTATATGLVAAATGLA
FT                 STTTGLAAAATELAAATTRLASATTGLASASTGLAATRTAAHGTDASGLDS
FT                 PPCPTPQQLLARQIMPKDLPKFHGNPEEWPLFFTAFTNSTNACGYSNVENM
FT                 ARLQQAVQGRALEQVRGRLLYPTLVPQVMSTLYMLYGRPELIIQTLLDKVR
FT                 DCPSPKAEKLETLITFGMTVQNLCDHIIAAGHVAHLCNPVLLRELVEKLPA
FT                 QQRLNWALYKQQFPATDLSTFAAYMAKLVEAASEVTVITDSKQPRSGRTER
FT                 GVERSYVNVHSTSDSPTRDEHPKRSTEKGDRGHQMLSVQRN"
FT   CDS           4672..8325
FT                 /product="BEL-18_CQ-I_2p"
FT                 /translation="MRFPDLARKFTYLRGLPVRSYEAATPGILIGSNNAGL
FT                 IATLNLREGELGDPLASKTRLGWTIYGSSSDGQRTTNFTLHVCNYQEDQHA
FT                 DQELHDLVKRHFTVESIGVSADKGPESEEDKRARLILMETTKRVADGFETG
FT                 LLWRHDETRFPDSFPMAMRRLECFERRMKNDPELQASVQQQIKEYLESSYI
FT                 HEVTPEEIESANPHKIWYLPLGAVRNPKKPGKIRLIWDASAKVGNVSLNAM
FT                 LLKGPDLLTPLASVLCGFRERPVAVCGDLRQMFHQFRIRSEDVHSQRFLYR
FT                 EHFTEPVKVFAMDVGSFGATCSPCQAQYIKNLNAREHEKEFPEAAKAVINK
FT                 HYVDDYLDSFDTEAEAIKVALDVKELHSRGGFEIRNWHSNSEALLARVGEP
FT                 KKVSTRAISIDSESEAERVLGLLWLPEEDLLAFATELQLDGIPPTKRNILR
FT                 CVMSLFDSQGLLSHITIQGRMIIQDTWRGKTNWDDEVIETIRVRWLRWTQL
FT                 FKKVGGIRLNRAYFPGFSAAEIGAVELHIFTDASEEAYACTAYFRVVINGK
FT                 VYVTLAMAKAKVAPLKALSVPRLELMGALLGARLAKAVMEYHSFPICRRVF
FT                 WTDSKTTLAWIQSEHRRYRQFVAFRVGEILSKTDVIEWRYVPTLLNPADEA
FT                 TKWGKGPSTDVNSRWFSGPEFLYLPETEWPAQVSTELDTDEELRPCMVHRE
FT                 HQTEDVYEINRFSRWELLQRTAAYVHRFIGNCRRKMQNQPLAAGCLKGEEL
FT                 RTAERSLWRTVQLSEYPDEVIALKQGGARPKKTIEKTSPLYKLTPYLDEHG
FT                 VMRVDSRIGAVPYVNFDFKYPIILPRRHYLTKLIVDWYHRRYLHANHSTVH
FT                 NEVRQRFHVSSLYTVVLQVAKDCQTCKNNKAVPTTPRMAPLPYSRLAAGVR
FT                 PFSYVGLDYFGPIHVRVGRSSVKRWVALFTCLTVRAVHLEVVHTLSTESCK
FT                 MAVRRFVARRGSPVEIHSDNGTNFQGASRELKDEIEVIGKNLAETFTNSNT
FT                 KWLFIPPSAPHFGGSWERLVKSVKVALRSLCSDRKPDDETLLTVLAEAGSI
FT                 VNSRPLTKIPLEDASQEALTPNHFLLLSSNGVIQPPSSLTQPPKVTRTNWN
FT                 LAKQLVDQFWRRWISEYLPIISKRTRWFSETEALKVDDLVLIVNEGQRNGW
FT                 TRGRVLTVIPGRDGRIRQATVQTAAGILKRPVAKLAVLNVQDSCNATVPAE
FT                 PERRYGSG"
XX
SQ   Sequence 8327 BP; 2274 A; 2197 C; 2180 G; 1676 T; 0 other;
     ttatcaaaga attacgtgag ttctcgtgaa cagacaaagc acacgatggc gacctttccg        60
     caggagatga tacttcgacc gtgcaagatc tgccaacagg acggtcgacc ggacaatatg       120
     atgctctgct tcagctgtaa aggatggttt catccgcgct gcttgggtcc cggagagaag       180
     ctattcattg gaagctggac gtgcgcagcc tgtgtggctg cggcagaact ccctgcaagt       240
     gaatcaacca ctatcgcacc gaacacagta caaactgaaa cctcagctac tgcaacaaag       300
     gcgccggctg ggtcgattct caccgagaag gccaaagcgg atttactgtg gatagcagag       360
     caaagggagt acgttctccg tgaagttgaa agacaacggc tggaactaga tcaaaagaag       420
     gaggaaatgg aaaggctgag ccgcgaggct gcccagatgc tgagcatgaa tctgcaagca       480
     gtacaaagca cgtctggcca acagtccagc gcgaacagtt cggaaggttg ggtgcaaagg       540
     attatggagg agatcaagaa tatatctatt ggcactcctg gaccgaccgg acacgacacg       600
     caaacctctg gttacatgca cagctccact cccacaaagg cagccaatat cgggactctg       660
     cctacgaacg taggcacgtt tacagtgctt aaccgtccca ccattccatc gacgggctac       720
     tcttgtggca ctgactcctt cttgtcccta cccgaacacc agcaacaaac gtcgcagcag       780
     cagccaccgc ctcagccgcc acacggtttg tcgcaaactt ggccgcaccc acaacagact       840
     tggacgcatt ctcaacaagg tggatatcag tcaaatcagg cttggcctca gccgcaaacg       900
     agtgggccgc aaccaagtgc gcctcaacca catcaggatg caccgaacac gcatcggagt       960
     ggaccagaac aggcttggcc tcagccacag caagttgacc atcagccaca accaggtcgg      1020
     tcgcaacagc ttgcgccgca gccgacacag gcttggcagc agtcacaacc aggtggacag      1080
     caacaggttg cgccgcagcg tcaacaggct tggccgcagc cacaactagg aagatcgcaa      1140
     cagagtgcgc cgcagcctca acagacatgg tcgcaaccac cacaaggagg acaacaacag      1200
     ggaccacagc agccgcagcc tcaacaggtt caaccgcaac cgcaacaggc ttggtcgcag      1260
     cggcaacagg cttggcctca accacaaccg gcttggcagc agccgcaacc gaattggccg      1320
     cagccacaac aaggttggcc tcagccacaa caggtttggc ctcagcatca acaggattgg      1380
     ctgcaacaag gactgcagca catgggacag acgcctcagg actggactcc cccccatgtc      1440
     caacaccgca gcagttactg gccagacaga tcatgccaaa ggatttacct aaatttcatg      1500
     gaaacccaga ggaatggcca ctcttcttca ctgcgtttac taactccacc aacgcttgcg      1560
     gttattcaaa cgtggagaac atggcacgcc ttcagcaggc ggtgcaagga agagctctgg      1620
     aacaggtgag gggccggttg ctttacccga cactcgtgcc ccaggtgatg tcgactttgt      1680
     atatgctcta cggaaggcca gaattgatca tccagacgct actggacaag gtgcgagact      1740
     gcccgtcgcc aaaggcagag aaactagaaa ccctaataac cttcggcatg acagttcaga      1800
     acctatgtga ccacataata gccgccggtc acgtagcaca tctctgcaac ccagtccttc      1860
     tgcgagagct ggtggaaaag ctcccagcac aacaacgtct gaactgggct ctatataaac      1920
     aacagtttcc ggcaaccgac ctcagcacat ttgctgctta catggcgaaa ctcgttgaag      1980
     cggcgtccga ggtcacggtc atcaccgatt ccaaacagcc acgttcggga cgaactgaac      2040
     gcggcgtaga aaggagctac gtaaacgttc actcaaccag tgactcgccg acgagagatg      2100
     aacaccccaa aagaagcacc gaaaaaggag accgtggaca tcaaatgctt agcgtgcaac      2160
     gcaactaacc acaaggtgaa aaactgcgag acgtttcaaa agtgggaact caatttgcgc      2220
     tggaagctag ttcaagataa ccacctctgt cgaacatgcc tgggcaaaca cggacgtcgc      2280
     ccgtgtaatt taagaacgcg atgcggtatg gacggatgtc aggaacggca tcatgaacta      2340
     ctacaccgcg aaactccaaa ggaccaaacg ccatcacagg agggacacaa tcgagccgga      2400
     gaaacgaaga tcgcaggaga tgggtttaat gctcaccacg ctacaaagaa gtccacattg      2460
     ttccgaatcc taccagtaac actaacctgg atctgtgaac acatacgcat tccttgacga      2520
     cggttccgac ttgaccctag tcgaacaatc tatcgcggga caactgggaa tcgacgacgg      2580
     tgttcctact cctctatgtc tatcttggac cagcaacgtg acaagacaag aaccgaagtc      2640
     ccaacgcgtt cgtctggaga tctccggaga aggcaagaaa gagcggttta ctcaaggggg      2700
     ttgacactcg atcattctgg aataattctg ggttaattct ggaatgaacg gaatgacgat      2760
     gatgattcta gcaaaaatga tgaagtgcgg gtaagagtgt aactgtcata atatttatct      2820
     ttctaaacca aaacaagtta cggttctctg cagcattgag taggacccgg taggacaaca      2880
     gaaccggcgg ttgttctgta ctgttccggt gccgtgcgac gtccagagca acggccagat      2940
     tggccttcac tggaatctga ccgagctgct gttggccact agacgaggtt ggtattattg      3000
     gatttgctaa gtggttgttt agtggatttt taaaactgac tttcaatttc tgatttccct      3060
     agacagcatc taagtggacc agctacgtac cggcgaggcc aacgtgctag ttattccggt      3120
     ggaggtcgat acagcgcatc caagatcagg ctaggaagcg gcagacggaa ctgaacctgt      3180
     tgggggactt gtttgggccg tagatagcaa gggaagggac tgaggtggcg gagattcctt      3240
     ggacgagtcg gatgaggagt tcgcgaggag gctgatgccg acgggcagaa cttttttttg      3300
     atgatttgaa gacgtcaaaa cgtgcttgcc ttgccggccg agatcgtcat gaacaaaacc      3360
     accaagaagc aaacgtaaat tcagatgcag tcgcagaaga tttcggtact gaacacccca      3420
     tacagtaact tcgtggacca gttacgcaat ggcgaggtca acgtgctggt cgttcgggtg      3480
     gagattgatc ctgcaacgcg ttgggccaca ccgttctcgt cgtgctgttc aacattatcg      3540
     accgatttct atccatactg ctcgcactcg gagtggccag tcaggggcaa ccgacgatga      3600
     ccaccgaaag aatgcgaaaa ttgacacctc gacccgtacc atctggacga cgacgtcaga      3660
     tggtacgggg tcaagagcca caacatggcg gatagtgtaa tgcaatttgg tgatattgtg      3720
     aaataaagta taattaaatt gagttagttt gattttaacc aactcggtga cgtaaccgcc      3780
     gcatcagtta gtggacatcg cccgcaatct atcggcttgc acaagggcat cccagtccac      3840
     tcggcggacc gactgcaggg tggggttgcc attcgacgca ccaacgattt cctcgcaatc      3900
     tcgtcggatg atgaactcga agtttttatt cacaaattct ggtcacgcac gccgtgatcc      3960
     gaaaggctac gtcggagtag tggcagttgc aagtggtaaa ctcgaatcgg ccgttctggt      4020
     cttagcgatg ttctggatga acgaacacgt cgtggttccg gaagtccaag cgcaagcgca      4080
     ttctcaagca gctgcatcca gttcgcctcg ttcactatta gaaactgtaa tgcgaaaaaa      4140
     aatgtgtgtt gcacacggtc aaatgggccg ccaccggccc ggcatcgcca ccacaatgtg      4200
     tggccgcgtc tgcaaccgtt gtaccaccag tggctgatcc gtcctgccgg tgaccacaca      4260
     aacagtcacc cccatcggtt gacggccacc gaaaattgtt ccgccatcca gtcaccgaat      4320
     atctcgtagg ccagcgcgag gtccactcca gggtatcttg tacgcgttgg aaaacgcctc      4380
     cgcagggact tttgcttgcc acaaacgcca cgaacaagga cacggaattt tcaatgtttg      4440
     atattggaaa gatgtttact tttccaacaa gagaatgaca gtttcaaatt gctaacacgc      4500
     aaaaacaaaa ttaggtagaa acggaattat tatgtttatg ccagcatcat tccagaataa      4560
     ttctggaatg aacagaatga ttcgaatgaa aatattcgat gtgtcaaccc cctttggttt      4620
     actctgaacg atacgaggac ggtagccagc ttggacctgc cgaagcagac aatgcggttc      4680
     cctgacctcg cgcgaaagtt cacctatcta cgaggtctgc cagtcagaag ctacgaggca      4740
     gccacccctg gaatcctaat cggctctaac aacgcgggac tcattgccac gctgaacctg      4800
     cgcgaaggcg aacttggcga tccactagcc agtaaaacac gactgggctg gactatctat      4860
     ggatcttctt cagacggaca gagaacgacc aacttcacgc tacacgtctg caactatcag      4920
     gaggaccaac atgctgacca ggaattgcac gacctcgtga aacgccactt cacagtcgag      4980
     agcatcggcg tctcagcaga caagggccct gaatccgaag aagacaagcg tgctcgcctc      5040
     atcttaatgg agacaacaaa acgtgttgcg gatgggtttg agaccggcct tctctggcgc      5100
     catgacgaga ccaggtttcc agacagcttc ccgatggcga tgcgccgcct ggagtgtttc      5160
     gaacgaagaa tgaaaaatga ccccgagctg caggcaagcg ttcagcagca aatcaaagag      5220
     tacctggaga gtagttatat tcacgaggtg acgccggagg agattgaaag cgcaaaccct      5280
     cacaaaatct ggtacctccc cctgggcgct gtgcggaacc caaagaagcc aggaaaaatc      5340
     cgactaattt gggatgcatc agctaaagtc ggaaacgtct ccctgaacgc aatgctcctc      5400
     aaaggacctg acctgctcac ccctctggcc tcggtgttgt gcggctttcg agaacgacca      5460
     gtagctgttt gcggtgacct acgacaaatg tttcaccagt tcagaattcg gagcgaggat      5520
     gtacacagcc agcgattcct ctatcgggaa cacttcacag aacccgtcaa ggtattcgcg      5580
     atggatgtag gaagcttcgg tgccacctgc tcaccctgtc aagcccagta tataaaaaat      5640
     ctgaatgcca gagagcacga aaaggaattc cccgaagcgg ccaaagcggt cataaacaag      5700
     cactatgtcg acgactacct tgatagtttt gacacagaag ctgaagccat caaagtcgcg      5760
     ctggatgtca aggaactgca ctcccgcggg ggattcgaaa taagaaattg gcactcaaat      5820
     tcagaagcac ttctggcacg ggtcggggag cccaaaaagg tctccacgag agccatcagc      5880
     atcgactcgg agagcgaagc agaacgagtt ctggggctgt tgtggctgcc ggaagaggat      5940
     cttctagcat ttgccacaga gctacagcta gacggaattc ctccaacaaa acggaacatc      6000
     ctgcgttgcg ttatgagctt gttcgactcc caaggtttgc tgtcccacat taccattcaa      6060
     gggaggatga tcatccagga cacctggcgc ggcaagacga attgggacga cgaagtcatc      6120
     gaaacaatac gcgtgcggtg gctcagatgg acacagctgt ttaagaaggt cggaggaatt      6180
     aggctaaacc gggcgtactt cccaggattc tctgcagcgg agattggcgc ggttgagcta      6240
     catatcttca ccgatgcgag cgaggaagct tacgcctgta ctgcctactt ccgggtcgta      6300
     atcaacggga aagtgtacgt cacgctggcg atggctaaag ctaaggttgc cccgttgaaa      6360
     gcgttgtcag taccacgtct ggagttaatg ggggctctgc tgggggcacg gctggctaaa      6420
     gctgtgatgg aataccactc ctttcctatc tgtcgccggg tcttttggac agactcaaaa      6480
     acaacgctcg cctggatcca gtcggaacat cgccggtatc gacaatttgt ggccttcaga      6540
     gtaggagaga ttttgagcaa gactgatgtc attgaatgga gatacgtccc aactctactc      6600
     aatccggctg acgaagcaac caaatggggt aagggaccca gcactgacgt caactcaagg      6660
     tggttcagcg gaccggaatt cctctatcta ccagaaacgg aatggccggc gcaagtgtcg      6720
     acagaactgg atacggacga ggagcttcgg ccctgtatgg ttcaccggga gcatcaaacg      6780
     gaagatgtct acgaaatcaa ccgcttctcc cgttgggagc ttcttcaaag gacagcagca      6840
     tacgttcacc gcttcatcgg gaactgcagg cgcaaaatgc aaaaccagcc tctcgcagcg      6900
     gggtgcttga aaggggaaga gttgcggaca gcggagcgca gcctgtggcg cacggtgcag      6960
     ctgtcagaat atccggacga agttatcgct ttaaaacaag gaggagcacg acccaagaag      7020
     accatcgaga agacaagccc cctatataag ctgacaccat acctggatga gcatggtgtg      7080
     atgcgagtcg acagccgtat tggagccgtt ccatacgtca acttcgactt caagtaccct      7140
     attatcctgc cgcggcgtca ttaccttacc aagctgatcg tcgactggta ccaccgcagg      7200
     tacttgcacg ccaatcacag tacagtccac aacgaggttc gccaaagatt tcacgtctcc      7260
     agtctgtaca cagttgttct ccaagttgca aaggattgtc agacctgtaa gaataacaaa      7320
     gcagttccaa cgactcctcg aatggctcct ttaccatact cgaggctcgc ggccggggtg      7380
     cgtccatttt cgtatgtcgg gctcgactat tttggaccca tacatgtacg tgtcggacga      7440
     agctctgtaa agcggtgggt cgcccttttt acctgcctga cagtgcgagc agttcacctc      7500
     gaagtcgtcc atacactctc gaccgaatca tgcaagatgg ctgtgcgaag gttcgtggct      7560
     cgtcgcggat ctccggtgga aatacattca gacaacggaa cgaattttca aggggctagc      7620
     cgggagctga aggacgaaat cgaggttatt ggaaaaaact tggccgaaac cttcaccaac      7680
     tctaacacaa agtggctgtt cattccaccg tccgcgccac acttcggagg ttcgtgggaa      7740
     agactggtga aatccgtcaa ggtggcactt cgttcattgt gcagtgatcg caagcccgac      7800
     gacgagacac tgctgactgt ccttgccgag gcagggtcga tagtgaactc cagaccacta      7860
     acgaaaatcc cactggaaga cgccagccag gaagctctca ccccgaatca ctttttgctg      7920
     ctaagctcga atggagtcat acaaccacct tcgtcactga cgcagccacc gaaggtaact      7980
     cgcaccaact ggaacttggc caagcagctc gtggatcaat tttggagacg gtggattagc      8040
     gaatacctcc caataatatc caaaaggacg agatggttca gtgaaacgga agctctcaaa      8100
     gtagacgatt tggtgctgat cgttaacgaa ggacaaagga atggttggac aagaggacga      8160
     gtactgacgg tgatccccgg ccgcgacggc cgcattcgac aggcgacagt gcaaacggcg      8220
     gcagggatac tgaaacgacc agtagctaaa ttggcagtgc tgaacgtcca ggacagctgt      8280
     aacgcaacag taccagcgga accggaaagg cgttacgggt cggggga                    8327
//
ID   BEL-18_CQ-LTR repbase;    DNA;    INV; 730 BP.
XX
AC   AAWU01035939;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_CQ_;
KW   BEL-18_CQ-I; BEL-18_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-730
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 190-190 (2011).
XX
DR   Genome; AAWU01035939; Positions   10164   10893.
XX
SQ   Sequence 730 BP; 238 A; 165 C; 158 G; 169 T; 0 other;
     tgtggacgga agcaacagca tcgacggtac aacattgcgt gagggtccct cgtcaaacag        60
     caaacacatc tacaccacca gggtagctga gcgaagtcta cgtcgatcgg gccgtctagc       120
     tagtgccaac cagaagaaga ggaagaatta agcgaaacga gtagggattg tacgcagtgc       180
     gatttgcaga acgccacctt ttttgtttaa aacgacttaa acataacaat tagtagtttt       240
     aaaacattgc gctgaacgat actccgtgta cgaccgaagc gagtggttct agaccgtggt       300
     cgcgagaacc acacagctac ttcggtaatt aacgactccc cgcaacttta ggttagaatt       360
     cagatgattt gctaatttcc ctatttaatt tacatgtaaa ggttccgagc agaacctggc       420
     aagtgtccaa acggccaagg aggccaaaaa gatccccaga acacgcgtaa gcaattaggt       480
     atgatcaaat gtgaattagc tccaaacata cctcctaaca atctctgtac gaacgattac       540
     cgtaggctgg gcaaaactgg tcgtcaccga acatcgttgt cgtgtttaat gatcaatcgg       600
     attgagggaa aactaattgt aagtctacag aacatctact gatagcaatg aacttaataa       660
     aacgaattat ttcagcttta agctgcgcta cacaaaacag ctgctgcaaa gagtttcacc       720
     caaatcaaca                                                              730
//
ID   BEL-18_DAn-I repbase;    DNA;    INV; 2576 BP.
XX
AC   AAPP01019845;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DAn_;
KW   BEL-18_DAn-LTR; BEL-18_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2576
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019845; Positions   95954   93379.
XX
CC   'ATGCA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..2388
FT                 /product="BEL-18_DAn-I_1p"
FT                 /translation="MGSESDPVIQMLIDEQIESNLVIQRLIRNFTKDSAER
FT                 KLKGGYFEEKLRQLTHSWTQFKKNDAKLKELALSPENEYFPKAKALEELVK
FT                 KYEAIFSDGIPSVSGPSQRPRKTGENLEPKAQSSRGNEGEDLRLTSLKRRH
FT                 EGRLDDMEDLLCNRTEGREVSTHVRQHMKELWKEIVTGYHDLIDLEPAIKN
FT                 DGHTDDRFQVVRAEYFSFLSEESKSTSASTQKLAIAPPFVIPPVEIPKFDG
FT                 DYRHWLRFYEIFTECIHDQDYSDAVKFRHLENHVTGEAQNLIATSIGGQTS
FT                 YQDAWQRLKNRYHNERLLIQSAIQELFGHPRTNGSADQLCSLHDTVLRTVA
FT                 TLDALKVSTDNWDPILIHIIEERLDPHTLSALELAVNDPTNRQSLKQMLEN
FT                 LERQATSQVTMQKNTSAAPLRSSSSRWVCSATALTDKPTVLLPTAQVAIHG
FT                 PAGTHQQCRTLLDSGSQINIITRRMADTLGLQLEPSTLNIAALGGTTKRLG
FT                 KKAVVTLSSLTTDFEDQINVVVLPEIMPNQPSHPIQAPRNISPQLRLADPE
FT                 FTQPQNIDLLLGAEIISQLMRPQQTYLGEGQPLLKNTALGWIVMGPVRPES
FT                 APNSKAEQVVGNMMAWTPEANEPRQSLIACIGKEQIVKSGRVHSSPLIADQ
FT                 QEANEPRQDQQGEPQTDPNPQAQGCQLTTEEHRVKGPVTKEIQGVEVTSYL
FT                 AWVTCISEREQEARSREDQESCMRTDQPEKRCSTSWDAQGEWLRGRATRRR
FT                 RQQVG"
XX
SQ   Sequence 2576 BP; 882 A; 610 C; 571 G; 513 T; 0 other;
     tttggtgacc ccgacgtgat cctttaggat cacaacttga acacaaacct caacgcaatt        60
     taactcaacg aaaaaaaaaa aaaaaaaaaa aaagggagag aggagagata cattgcaaca       120
     atgggatcag aatcagaccc cgtaatccaa atgctcattg atgagcaaat tgaaagcaac       180
     ttagtcatcc aaaggctaat aagaaacttc actaaggact ccgcagagcg taaactcaag       240
     ggaggatact tcgaagagaa actcagacag ctcactcact catggaccca gtttaaaaaa       300
     aatgatgcca agctcaagga gctagcacta agtcctgaga atgagtattt cccaaaggcc       360
     aaagcgctag aagagcttgt gaaaaaatat gaagcaatat tttcggatgg aatcccatca       420
     gtgtcaggcc cgtcacaaag gccccggaaa acaggcgaaa atctcgagcc aaaggcacaa       480
     tcatcacgag gaaacgaagg agaagacctt cgattaacat cattaaaacg aagacatgaa       540
     ggacgattag acgatatgga agacttgctg tgcaaccgca ccgaaggacg ggaagtgtcc       600
     acacacgtca gacaacacat gaaggagcta tggaaggaaa tcgtcacggg ataccatgat       660
     ctcatcgacc tggaaccagc cataaaaaat gatggacaca ccgatgacag atttcaggtt       720
     gtacgagcag aatatttttc gtttttgagc gaagaatcga aatcaacttc agcatcaaca       780
     caaaaactcg cgattgcacc tccgtttgta ataccaccag tagaaattcc aaagtttgac       840
     ggagactacc ggcattggct acgattctac gaaattttta cggaatgcat ccacgatcaa       900
     gactacagtg atgcagtaaa attccgtcat ttggagaatc atgtaacagg tgaagcacaa       960
     aacctaatcg caacgtcgat tggcggacag accagttacc aggatgcatg gcaacgacta      1020
     aagaatcgat accacaatga acggctgttg attcaatccg cgattcaaga gcttttcgga      1080
     caccccagaa caaatggatc agcggaccag ctgtgcagct tacatgatac cgtgctccga      1140
     acggtcgcca ctctcgacgc actcaaagtg tcaacagaca actgggaccc aatcttgata      1200
     cacatcattg aggaaagatt ggatccacac acgctgtcag ctctagaact agccgtcaat      1260
     gatccaacca atcgacaatc tctgaagcag atgttagaaa accttgagcg tcaggcaacc      1320
     agtcaagtaa caatgcagaa aaatacgtcg gcggctccac ttcgatccag ttcatcacga      1380
     tgggtgtgtt cagccacagc ccttacagat aagcccaccg ttcttttacc aaccgcccaa      1440
     gtggcaatac atggcccagc cggaacccat cagcaatgcc gcacactcct agattctgga      1500
     tcacagatta acataatcac cagaaggatg gctgatacac ttggactaca attggagcca      1560
     tcaaccctga acatcgctgc actgggagga acaacaaaaa gattaggaaa aaaggctgtg      1620
     gtgaccctat catcattaac cactgacttc gaagatcaaa tcaacgtcgt tgtactaccg      1680
     gaaataatgc ccaatcaacc atcccaccct attcaagcgc caagaaatat ctcacctcag      1740
     ttgcgcttag ccgatcctga atttacgcag ccccagaata ttgatctgtt gttgggcgcc      1800
     gaaatcatct cccagcttat gaggccacaa cagacatatt tgggagaagg gcaaccacta      1860
     ctaaaaaata ccgcgcttgg atggattgtg atggggccag tgcgaccgga atcagctcct      1920
     aatagcaagg cagaacaagt cgtcggtaat atgatggctt ggacaccgga agctaacgag      1980
     ccacgacaaa gtttgattgc atgcatcggc aaggagcaaa tagtaaaatc cggaagagta      2040
     catagttccc cactcattgc ggatcaacaa gaagctaacg agccacgaca agatcaacaa      2100
     ggagagccgc agacggaccc caatccacaa gcccaaggtt gtcaactcac aactgaagag      2160
     cacagagtga aagggccagt aaccaaggaa attcaaggag tagaagtcac ctcctatctg      2220
     gcatgggtaa catgcatttc cgaaagggag caagaagcaa ggtcaagaga ggaccaagag      2280
     tcctgtatgc gcactgacca accagaaaaa aggtgtagta cttcatggga tgcccaagga      2340
     gaatggttac gagggcgcgc aacaaggcga aggagacaac aggtcggata gaattatcgt      2400
     tggtagagat ctcacccaca tgattcaaaa attttttttg tagtaacttt agatttttag      2460
     taattagttt taagatacac aatattttct atggcaaggg tacacatcgg ttcactaaga      2520
     cggtccaaca acaacgcaca gcccctatta ttgagtacct caatgggggg ggagaa          2576
//
ID   BEL-18_DAn-LTR repbase;    DNA;    INV; 999 BP.
XX
AC   AAPP01019845;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DAn_;
KW   BEL-18_DAn-LTR; BEL-18_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-999
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019845; Positions   93378   92380.
XX
SQ   Sequence 999 BP; 300 A; 273 C; 201 G; 225 T; 0 other;
     tgttggcacc tagtgccaag acctactacc ctatatgcac acttagtaat ttgatccaat        60
     caatatgcat cagcatgtcg caatataaaa acccactaac cgattgtctc acctataaac       120
     aattagtaat aagcataaaa ctatatccaa cctattaacc cagcactagt agacggcgcc       180
     aaaagcagaa gcagcatatc agcgggaaga atgaccgact gaccgatgca agtaaaaacc       240
     agccagctaa gccgaaatgc gcaagcagta catgaacaaa caatctgagt cagcagactc       300
     agaggtgggt gaccctggca ttaaccttag tttagcacgt ccagaacttt gacctttctt       360
     agatttaatg atgtataatt tagcatctta tataagagtt attcttctga aataaagaca       420
     gttccgaaat cagagtcaat cgtctcgtta ctcagtgtct gaaccacggc acttaaaatc       480
     aacctacttc tagtgatcct gtgtaaaacg gttcacaagt agaatccgcg gcataccagt       540
     ctacttctag tgttgctccc gtgaaacgga ccacaagtag accccgcgtc acctccttac       600
     ttctcgtgtt gctcccgtga aacggaccac gaggagaccc cgcggcatac cagtctagct       660
     cgagtgttgc tcccgtgaaa cggaccacca gcagaccccg cgctatctaa cctacttaga       720
     gtgttgctcc cgtgaaacgg accgccagta ggaccggccg ataaggaatc agccgaacca       780
     acataccacc ggtacttgag gaaaaccacc ccaggacttc aagcacatca actcatgcct       840
     gatcacagca agcgtctggc caacccgagc agtcccttgc agaatccagg taaatttagt       900
     caggactatt tatggttttg actacgactc cgggacctac cgttactccc gtgagttcaa       960
     gtttgacgta gctgccgcgt aacgctctac ggacgaaca                              999
//
ID   BEL-18_DEl-I repbase;    DNA;    INV; 2941 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2941
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 450-450 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(790..987,924..1214,1218..1835,1822..2295)
FT                 /product="BEL-18_DEl-I_1p"
FT                 /note="reverse transcriptase and peptidase A17."
FT                 /translation="LLPSETVSYCSKVEGCFLATLDNRVPSNSNETHKVVC
FT                 HLKRRNTRLVKTTTFFGGHFQSTDCVRTSARKNHYILWWAFPEHRLRTYQL
FT                 NTVTYRPAAAPFLAIRSLTHLAEVHHKKYPLKAAVRKSSLYVDYLLTCTDD
FT                 LHTFRKTKDQVTEILRRGHFPFTKHSNPADFVESHTKKDLRPFKNDLVSTL
FT                 LVSWNSNSSHYKKNNPFQNFGLVAKIIFQELWLAGLGLEESVPQNLHMAWR
FT                 KCFESFQRVPLLSIPRCCLQPKPRSLQVHGFCDSSIRVYGSCIYLSSETTC
FT                 GNVDIVSWGTTTSEFGAPIWFLDLHFLTQSFAAWPTSPQIVDIDLDAVKME
FT                 HIQYNCSAQPYSLAVKNYQHITYLFLHIYFCRPINTYFRIRGRVPIKSYPA
FT                 VLVCMATNVVHIEVVYELSAKSFLAAFKSMFSPRFIPTDVFCDNGTNFFGA
FT                 TKQLQDSFIPSHLATDLITFHFIPSRAAYFGGLWKAALKSANGLIYRTLIN
FT                 LRFTFKELFTITTVKRSFFEFSPVIVTISGP"
XX
SQ   Sequence 2941 BP; 873 A; 642 C; 567 G; 849 T; 10 other;
     atactagcaa aaataacacg gcagccaata attctaccaa agggaaataa atttaccgac        60
     ttgattacct tgcacaagta cagactttat ttccaacaaa ataaagaact aatagtgaac       120
     taatagtgaa tcaatatcag tgccagtatt gcaaaaatag aatcgaattg ccagtaacca       180
     cactaatgga gcaattactc atggataggg ttacaccatg taatcgaccg tttacttaca       240
     tagggcttaa ttactttggg cccatataag ttactattgg gaggcgacac gagaaacggt       300
     aggttgcatt gtttacctgt ctaaccgtta gaaccataca cctagaactt gccgaagact       360
     tgtcgtctgg tgcatgcacc gtattcatcc gaaattttcg tgaatagaca aggtattccc       420
     aatgtatcat tcgctctgat atgggtacaa ccttttttgg tgtcgcgaca atattctaag       480
     gaacactaac gacctctttg attgggagta tataaaagca acgcttgcga ttaaggacat       540
     taactgtgaa tttaaatgtc caggtaaaac tagttcatga gcatgctgag aggggttggt       600
     tcaatcgaca aagcgattcc tgtaacttta aagaagcaga caccaagagt agaaactctt       660
     cgtagtctac taatagaggg tgaaaatatt ataagcagta gaccatgttc ctgtttcttt       720
     agatgaccca gaaacacgta ccccaaatca ctttctgttc ggaacattaa actctacgca       780
     tagaaataat tactgccttc ggaaacagtt tcgtattgct cgaaagttga aggatgtttt       840
     ttggcgacgt tggataacag agtaccttcc aactctaacg agacgcacaa agtggtttgc       900
     catttgaaac ggagaaacac taggctcgta aaaaccacta cattctttgg tgggcatttc       960
     cagagcacag actgcgtacg taccagctga acacagtgac ttacagaccg gcagctgccc      1020
     cgttcttggc aatacgcagt ttgactcatc tcgccgaggt gcatcacaag aagtacccac      1080
     tcaaggctgc tgtaagaaag tcgtcgcttt acgtagatta tttgcttacc tgtacagatg      1140
     atctccacac ttttcgcaaa acgaaggatc aagtcacgga aattcttcgt cgagggcact      1200
     ttcctttcac aaaatagcat tcaaatccag ctgattttgt tgaaagtcac acaaagaagg      1260
     atcttaggcc gtttaagaat gaccttgtaa gcactttatt ggttagctgg aactccaact      1320
     ccagccatta caaaaagaac aatcctttcc aaaacttcgg cctcgttgcc aagataattt      1380
     ttcaagaact gtggctcgct ggactcggtt tggaagaaag cgtgccacaa aacctacaca      1440
     tggcttggag aaaatgtttt gagtcatttc agagagtacc attattgtcc atccctcgtt      1500
     gttgtctgca acctaagcct cggtcgctgc aggtacatgg cttctgcgat tcatcgatcc      1560
     gagtttacgg cagttgcata tacctaagct cggaaacaac gtgcggaaac gtcgatattg      1620
     tttcgtgggg aacaactaca tccgaatttg gagcaccaat atggttcctg gaccttcatt      1680
     tcttgacgca atcattcgcc gcttggccaa cctcgcctca aatcgtcgac atagatttgg      1740
     atgctgtcaa aatggagcac attcagtaca actgttcagc acaaccatat tctttagcgg      1800
     ttaaaaacta tcagcacata acatatctat ttttgtaggc cgatcaacac atatttccgg      1860
     attcgaggaa gagtacctat aaaatcgtat ccagcagtct tagtttgtat ggcgaccaat      1920
     gtcgtgcata tcgaagtggt ctatgagctg tcagccaagt catttctggc agcgtttaag      1980
     agtatgttct ctccgcgctt catacctaca gacgttttct gtgacaatgg tactaatttt      2040
     tttggagcta ccaaacagct tcaggacagc tttataccat cccatctagc cacagatctt      2100
     ataacgtttc atttcattcc ctccagagct gcatatttcg gaggcctttg gaaggcggcg      2160
     ctgaagagtg ccaatgggct gatctacagg acgttgatta acttaagatt tacgtttaaa      2220
     gagcttttta caatcacaac cgtgaaaaga agtttttttg aattctcgcc cgttatcgtc      2280
     actatctctg gaccctagtg gaccctagtt gacagtgctg cctacctaat tctgtggaaa      2340
     ggacaaactc attttcatga tatttccctg taaattagaa gttcatacta aaatgttata      2400
     atccgttaac ttgtattgca tatctcaatt tgtaattcac atgttaaatt ctcatgttaa      2460
     attctcccac gatgctaata aagcacatgt tggctgatga atcggatgaa tcgcaccagt      2520
     taccgttcat aagcatcttc atttttaatc gtagtaattg atttatacam ccccaaacta      2580
     atatttcatg caacacaaaa actctttgta cattaaacaa gagagtwaaa aagtatagat      2640
     aaaaactama cttatattgt aaccttcgta cgtggaagtt gagtgcagcc aatatttcca      2700
     cgaaccacca ttaataamct wactctaaaa ctcwcactgc ctgacttctt atttmcactg      2760
     aagaaaaagc tcttktttta acattttggc gacggtgata ggacmgagtt agtttaagag      2820
     ctaaatcgta tggtggctaa agttaagttt tttgtcactt atctttcctc ccggttatcg      2880
     cacgcgttta tgcggctccc gctgcaggtg tacccagack ctcattttgt cgaactgcgc      2940
     c                                                                      2941
//
ID   BEL-18_DTa-I repbase;    DNA;    INV; 5439 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DTa_;
KW   BEL-18_DTa-LTR; BEL-18_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5439
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1597-1597 (2012).
XX
DR   [1] (Consensus)
XX
CC   'AACC' target site duplication
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           309..1856
FT                 /product="BEL-18_DTa-I_1p"
FT                 /translation="MDDAIGRGSGEQYSHAAGYGAGSVGNAGCSFTGPFRG
FT                 FEDENVSRQTVIHSNQFVSLENASTPVTFNHAGYDASQNWAGQQFIQQVNT
FT                 CNMNAQRATPPYADRRAAPEFIPNAFSYANLQGNNAGQFTPTNTAAQCGPP
FT                 CNTVGFMPPNNAPMFVHQNGAAGFVPPASGLGFVPQPNAAYNAGLNAGNVG
FT                 AGRHMPQFAGTQLPHVGSSGFTLTPAQVASRQVISRDLPVFTGKPEEWLLF
FT                 ISNYEQSTERCGFTNEENLIRLQKCLKGSALEAVRGKLMIPAMVPYAIGTL
FT                 RMLYGRSEIVHASLQRKLKEEPPIKPNNLESVIRLALAVQNYCATMMSVGL
FT                 QEYLNDSSLLNDLVAKLPSDLKLDWGRHRLASGAANLTTFDKWLFGIAMCA
FT                 TMVAPYECHSTERDKSGRYSKERLLVHDMLENNDVGESKAHVTEEHPCPEC
FT                 GCDHGLANCKGFLSMSTKSRVEFIKSKRLCFCCFGKHIVRNCRVKKLCNID
FT                 GCKLPHNVLLHYPNTEIKSE"
XX
SQ   Sequence 5439 BP; 1499 A; 1208 C; 1430 G; 1292 T; 10 other;
     aaccacaagt gtaagctaaa atattttaat ttgattgagc tatctgtatg ctgtgaacca        60
     gagctcgaaa taagtggaaa ccctctggga ccgtgagtgt cccaacattc tgaaatactt       120
     tgccatctgg aaaactcggt gccaagggtg cacgtgcttt tgagaaagca ttcttttacc       180
     aagggtgtaa gagagtgagg tcagagtata cacgatagtg atcatagaga gccaaattcg       240
     taagtttcga cgactttggc tgagttgcgc agtagtactt gtgcagagag tgacgtcaca       300
     agtgcgaaat ggatgatgca atcggacgcg gatctggtga acagtattca cacgccgcgg       360
     gatatggagc aggttcagtt ggaaacgcag gatgcagttt cactgggcca ttcagaggtt       420
     ttgaggacga gaatgtatcc agacaaactg tgattcactc gaaccagttt gtgtcgcttg       480
     agaatgcgag cacaccggtc acgtttaatc atgccggtta cgacgcttcg cagaattggg       540
     cagggcagca gttcatacag caagtgaaca cgtgcaacat gaatgcgcaa agggccacgc       600
     ctccttatgc tgataggagg gcggcgccag aatttatacc gaacgcattt tcttatgcta       660
     atcttcaggg aaacaacgca gggcagttca cgccgacaaa taccgcagcg caatgcgggc       720
     cgccatgtaa tactgtcgga ttcatgccac caaacaatgc accaatgttt gtacatcaaa       780
     atggtgccgc agggttcgtt ccgccagcta gtggacttgg ttttgtacca cagccaaatg       840
     ccgcttataa tgctggactc aatgctggta acgttggagc aggaagacat atgccacagt       900
     ttgccggcac acagctccca cacgtaggat catcgggatt cacattaaca ccagctcaag       960
     ttgcatcgcg tcaggtcata tcacgagacc tgccagtttt caccggaaag cccgaagagt      1020
     ggcttttatt tataagcaat tatgaacaat caaccgagag atgtggattt accaacgaag      1080
     agaatctgat caggctccag aagtgtctga aaggatctgc gctagaagcc gtccggggaa      1140
     agctcatgat cccagctatg gtaccttatg ctattggaac gctaaggatg ttgtatgggc      1200
     gttcagagat agtgcatgct agcttgcaac ggaagctaaa agaagagccg cccattaaac      1260
     ccaacaactt ggaatccgtg attcgtctgg cactggcagt ccagaattat tgcgccacaa      1320
     tgatgtcagt tggactacag gaatacctta atgattcttc tctgctgaac gatttggttg      1380
     ctaagctgcc gagtgatctt aagctggatt ggggcagaca tcgcttagca tctggtgccg      1440
     ccaatttgac cacgttcgac aagtggcttt ttggtatagc gatgtgcgca acgatggttg      1500
     caccctatga atgtcactca acagagaggg ataaaagtgg aaggtattca aaggagcgcc      1560
     tgctagtgca cgacatgctg gaaaacaatg acgtcggcga gtcgaaggca cacgtcacag      1620
     aagaacatcc ttgtccagaa tgtggctgcg accatggtct ggcaaattgc aaaggattct      1680
     tatccatgtc caccaagtcg agagtggaat tcattaaatc caagcgactt tgtttttgtt      1740
     gttttggaaa gcatattgtc cgtaactgca gagtaaagaa actttgcaat atcgatggat      1800
     gtaagttacc gcacaacgtg ctgctgcact acccgaatac tgagattaag agcgagawtc      1860
     gcaatgacaa ggaggagagt cctgcaaaaa ccggcgggtc agagaccagc gagtctacgg      1920
     ttttcttcca tgagagatca acaacgaagg ctctgttccg ttatatacca gtgacattac      1980
     acaataattc ccgtagcata gacgtttatg ctctaatcga cgaaggagca tcmtgcackc      2040
     taatagaacg atcgttagcc gatgaactag ggcttgacgg gccagaggag cagctttgcc      2100
     taaagtggac tagcgacgtg acccaaagcg agtcaaaatc aaagatcgtc agcgcctgtg      2160
     tttccgctga gggtcgaccg gaagtaagac atgtacttaa gggagtgcgc actgtaagca      2220
     acttggatct tccacgatga tcagacacca aggaacgtcg gcatttgagt acggttccga      2280
     tctcaacata caaagatgcc aaagcgcaaa ttatcatcgg cctggacaac attaagatca      2340
     gtgtgccgct ggaggtacgt caagctgaag atgatgatct tattgctgtt cgatgtagat      2400
     taggatgggc tgtgtatggc cgccaaggac cggaaaatga cacgccgcct cgtgtattgc      2460
     atatctgcca ctgcactaca gtttgcggta cgcgcaaact tgacgaagct atgaaggcgt      2520
     tcttctcgtt ggaatcattc ggcgtgaacg ttcctaaaaa accgttgcga tctaaggaag      2580
     acgaacacgc gctaaagata atggaggcaa ctacaaagta gtggaaatac gacaaagtca      2640
     atatgcccga ttcgtacccc atggctctca aaaggctcaa gtgccttgaa gcaaaaatgt      2700
     taaaagatcc gaaactgaaa acgttcttga acaataccat gcagcactac gaggagaaga      2760
     gatacattcg caaacttgaa aaatgggagt tgtctaacaa tccgmgctct tggtatcttc      2820
     ctatattcac ggtaacaaac cccaacagaa gaagacgcgt ctggtacgck cgcaaggtcg      2880
     atcctgaacg acgcgctttt gaaaggaccg sacatgttgg tgtcctcgat gggagtgctg      2940
     ttgcgcttca gagaacgccc tgtagcggta tcaggcgata tacgggagat gtttcaccaa      3000
     gttaaagttg tcatatagac caattttctc agaagttctt atggcgtaat ggagatacta      3060
     gtcgccmacc tgatgcattc gcaatgcaag tcacgacgtt cggcgctgca tgctcgccgt      3120
     cacttgccga ctttatactg aggcgtaatg cagagagatt tggtgaaagt catccasaag      3180
     ccgtcaaggc tatttgccga aacacgttcg ttgacgattg gccggagtca gtcgataccg      3240
     aggacaaatg gttcgttgcg agcgtaaagg atattcacgc gaggaggatt cgagatgaga      3300
     aattgggtat caaactccaa gccgtgcgcg ctcgaacgac gctgaagcgc cgcctgagta      3360
     cctcggcaca caaacgaaat gcagagaaag tgttgggagt tggcggctgc ctggtccgac      3420
     atgttgacgc ttgtctgatg cttacgctgc agttgcgtat ttgcgagtcg atcttggaga      3480
     cgaaatcaga tgttccctgc tagcatcgaa aaccagagta gcgcctttga aacccatatc      3540
     agtaccacga atggaattaa tggcagcggt tttgggattg cgcttggcca agtctttgga      3600
     gtctgagcta tcaaccgaaa tcgagaaacg catattctgg actgatgctc aagatgttct      3660
     gttctggata agatccgacg ctcgcaagta cccgcaattc gtagctttgc gtgtcggaga      3720
     aattcttgaa ggttccgaag ttggtgaatg gcgctgggta ccctcggaac taaatgtagc      3780
     ggatgatggt acaaaatggt caaaaggtgt tgaggtaaat agttcgatac gatgtttgtt      3840
     cggaggagtg gccaaaggaa tatctaaagc cagagagact caagcgttgt accacaagga      3900
     gggaagtaag aaacaggtct cgcgctggca tctgttatgc cggatccatt acgtttcagc      3960
     aaactggagc gtctgcccgt gttcaaaaaa gagtgttaga ctttctacgc cttcttcctg      4020
     tgaaaccgca tggacctgag ctggagagac tgctgctgct kaagcgtgat gtggaaatgg      4080
     acgcaatttt cataaggaca tgtcaagagg aagaattttt cgacgaaatt cgatgcctta      4140
     aggaaaatcg atgcctgaca aactggaaaa gcattataaa tgctcaccgt acctggaccc      4200
     aaacggagtg cttcgcatgc agggtcgaat cgatgctatc gaaaatgtag aagtcgtgtt      4260
     aagcgtcccg ttatactttc gcgtcaccac aggattgcat accttatagt agagtgtcac      4320
     caccggaagt accatcatct gcacgcggaa atagttgtca acgaaatacg acaaaagtat      4380
     tggataccag gcctgagagc ccttgtgaag gaagtcgtca aaaactgccc cgtgtgctgc      4440
     atcaggcgag cacaacccat tccaccgatg atgggaattt gccaaaggaa cgtctatcgc      4500
     cgtatacact gccatttacg tttactggag tagactactt tggaccgatt gaagttgctg      4560
     taggaaggcg tcgcgagaag agatggggag ttttatttac ctgtctaaca gttcgcgctg      4620
     ttcatttaga attggtgccc tctctctcta cggactcatt tttgttgctc tgaaactatt      4680
     tactgctcgc agaggtgtcc cgttgctatc cgacaacgga acgaattttc ggggagccag      4740
     cagagtactc gcgcaagaga tcgagcgtat atcaacgtca gcagtggaaa ggaagtatcc      4800
     ggagwtgtcg tttagcttta ttcctccggg atcgcctcat atgggcggcg ctgggagcgt      4860
     atggtgcgtt ctacgaagtc gatcctgacg gaaattctgc cgaacgccgg actgcgcgag      4920
     gaagtattgc gcgctgcgtt ggccgatgtc gaacgcacct taaactcaag gccgttgacc      4980
     tatattccgt tggaatagga gaattcggaa gctctaacac caaaccactt cttggttggt      5040
     aactccagtg gtctacggga acgcggttcg atggaagcta acggattagg cttagccaag      5100
     catttccgca tcgctggtca actggcagat cgtttctgga aaagatggat tcgagagtat      5160
     ctacccaccc tgacgagacg tacaaaatgg tttcagccga cccagctcca atttccgtga      5220
     atgacgtggt tcttgtcgtt gatgaaacaa gcaagcgaaa cacctggact aaagggatcg      5280
     tcgtggatgt tcatctggcg aaggatggac aagttcgtag cggtgttgtg cgtacaccgg      5340
     gaggactcgt tactcgccct gcggtcaaac tggctaaatt ggacatatga ggattgtggt      5400
     actcagcgca gtcacgcaga agaatcacga ggtggggaa                             5439
//
ID   BEL-18_DTa-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DTa_;
KW   BEL-18_DTa-I; BEL-18_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-238
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1598-1598 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 238 BP; 80 A; 32 C; 51 G; 74 T; 1 other;
     tgttgcgagg ctaataagaa tgtagccgcg cgctaacggt caaatttcaa aagttgagtt        60
     atttgatgaa ttcaaaatct gttaatttaa attcactgta aattattcaa cactgctagg       120
     tcgataacat tgtttagttg ttcaacactg ttagtcagtg tcatatctag attcwagtat       180
     tggaaaactt gagaatgtaa gaataagaag tgacgctatt ggaagtgaaa gagcggca         238
//
ID   BEL-18_DWil-I repbase;    DNA;    INV; 5794 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DWil_;
KW   BEL-18_DWil-LTR; BEL-18_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5794
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1793-1793 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4817-5398] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           597..1577
FT                 /product="BEL-18_DWil-I_2p"
FT                 /translation="MSPPNETQLLPLRQQRNQLQSNIQSLRARIDLENDPI
FT                 ILDCQSQIIESYFKQALQVLTNIEKLDPADANRAEIENLFIETKAIILRRI
FT                 GASKKEKPEELSFFNSSTYHGGHHNRLPSLKLPKFDGKYGEFKKFITSFTN
FT                 MVHEDNSLSNVDKFNYLISCLSGQALSVVSPFQVSDENYPKALERLNERYD
FT                 KKVLIFVEHISSLFNIASMKKADAVTLRTILDTVSALRGSLLSLGSEADVL
FT                 NAVLIHIVMSKIDLESKQAYDRVQEYDKLPDWADCYQILSRHCQYLEGYLR
FT                 NRQEERPVRDKIHSTSKVFVAPKVDAFNVSQLSIG"
FT   CDS           1739..5758
FT                 /product="BEL-18_DWil-I_1p"
FT                 /translation="MHKDSNVQGNYQLDGPTIHHQSQQIIHNTHDESKTFA
FT                 TSMLTRHARRGLLPTAIVLIQDKLGEFQLARALLDSCSELTFITEELAKRL
FT                 QLPFRYDHYEIAGIGELRTHMKHSVSTKIRSRISPDEWNMEFIVTKSISLP
FT                 QPEKRLDVSNWAIPKEIELADPFFYKPGKVDLLLSVKEFFDLLKTGKISLG
FT                 IGLPHLVETALGWIVGGKIAEPQSTQQYTCNLTQQQDLNILLERFWKMDEI
FT                 HGIQNKDISLTSEEQACETHFQVHTQFLDSGRIQVRLPFKESPEQLGDSLS
FT                 CAKRRFLQLERRLASQHQLKEMYIDFLDEYLKLNHMEVASLDNLQSGNHYI
FT                 IPHHCVLRPQSSSTKLRVVFDASSKSSSNISLNDILMVGPTIQQDLILTLL
FT                 SFRLYRHAITADITKMYRQFLVAPEDRSFQQILWRKSPQEPIQLFQLNTVT
FT                 YGMSCAPFLAIRSLKFLSETYKELFPIGAAVLAEDMYVDDLLYGADSIEEL
FT                 NAKTNEVTKLLSKAGLELTKWNFSGAPTDYEYNLNIDNSDVTKALGMSWLP
FT                 TEDLILFRFDLPLTAIPTKRKIVSIMARLYDLLGLLAPVVVRYKILIQDLW
FT                 IERLDWDDPLPEILRTRWQQLEADLSNLDMVRVNRFVNTSPKNKCEIHGFS
FT                 DASNRAYGCCIYARVLDNGKYVTSLIISRSRVAPTQSQSIPRLELCASVLL
FT                 CQTWTKIKHKLNCLVSKTYFWTDSTVVLHWIKMHPSTLKCFIANRVSTIQT
FT                 QSQDIIWSHVPGKDNPADIVSRGCAARDLMQTIWFHGPRFLTLDALHWPKS
FT                 ERKTDFEPKELELRNTLVLKCSTSYKEKSIVEQIISRLSSFRMIVRVLAYV
FT                 LRVFNRVPINRNNTINATRSISVEEFKLAFNHIISSIQSDVFAKELKDLQA
FT                 GRSLKPELQKLNPFISNEQIGSQNIRLIRVGGRLAMADIPLDAKMPLLLPK
FT                 THNFTYKYIEDLHLRNLHAGAKVLIAILRLTVWIVNARELVRKVVRSCTHC
FT                 YHYKPVLMRQIMGNLPADRLLAERPFLICGVDLCGPFLTSYRIRSKVPYKT
FT                 YLAIFVCFSSKAIHTELISDLSANNFILCLKRFMRRRGVPIRIRSDNGTNL
FT                 VGACSQLEGFKRQFCSELNAKNLEEFSRNAGFEFNFIPPRAPHFGGLWEAA
FT                 VKSMKTLLIKNLTSSHLTYEELQSIAIEVEAILNSRPISIHSDDPNDGEAL
FT                 TPAHLLIGCSLQAIPEPVVNDSKLSYLSRWQRVTYLKQRFWELWKRDYVHQ
FT                 LQERSKWLHPENNIAKDQLVLIHEDNLPPQCWITGRVVEAILGADGRVRVA
FT                 DVRTKKGIIRRPICKLAPLPLRDDVDVN"
XX
SQ   Sequence 5794 BP; 1807 A; 1191 C; 1103 G; 1693 T; 0 other;
     ttggcgaccg tgacaggacc ttgcacttcg caagtcccaa cataaaaact taaaaactat        60
     ataaagtcgt ttattcgttc attatattgc attcatcgtt acatcatctt ggacagtcat       120
     cattggaatt ttcagcgtac atcatcatca cattcatcat tggacttctt catcgttaca       180
     taatcatctt ggatagtcgt catcggactt cttcatcatt ggcatttgca agacatcatc       240
     gtggacattt acgtggagcc ctatcataac ctaagtcaac ttgagtgtgt aaatttacag       300
     tatcaatttc cactcaaatt ttgactcaat taccactcat tagcgatcgt aaagctttca       360
     catgctttac actcacatgt aaaacactcg taagctttaa cacgtgctaa gtattaagca       420
     cagcggagta agtactcaaa ctgtcatata gagaaacgat ctacatatta aagctcactt       480
     attaagctct tgagtgaaac ttaatgcatt tgagtgtttt tattaaaact agaactcgtt       540
     tagctcacgt ttaattcatt tctaacttgc tacatttctt tcgttaaggg cccaaaatgt       600
     ctccaccaaa tgaaacgcag cttctacctc tcagacaaca acggaatcaa ctgcaatcta       660
     atattcaaag tttaagagct agaatcgatc ttgaaaatga ccctattata ttagattgtc       720
     agtctcaaat tattgagtcg tattttaaac aagcattaca agttctaacc aatattgaga       780
     agctagatcc agcagacgcg aatcgggcag agatagaaaa tctttttatc gaaacaaagg       840
     caatcatatt acggcgcatt ggcgcaagta aaaaggaaaa accagaagaa cttagtttct       900
     ttaattcatc gacttatcat gggggacatc ataatcggct tccatccctc aaattaccta       960
     aattcgacgg caaatatggg gaattcaaaa aatttattac ttcatttaca aatatggtac      1020
     atgaagacaa ctcattgtcc aatgttgaca aatttaacta tctaataagt tgtctatctg      1080
     gccaagctct aagcgtagtc tcgccatttc aagtatcaga cgaaaattat cccaaggccc      1140
     tagagcgcct caacgagcga tatgacaaga aagttcttat tttcgtagaa catatttcaa      1200
     gtttatttaa cattgctagc atgaaaaagg cagacgctgt taccctacgt acaattttgg      1260
     atacggtttc agctctacgc ggatcattgt tgtctcttgg gtctgaagct gatgtattaa      1320
     acgcagtact tattcacatt gttatgtcaa aaattgatct tgaatccaaa caagcatacg      1380
     atcgggttca agaatatgat aaattgccag actgggccga ctgttatcaa attctcagtc      1440
     gacactgtca atatttggaa gggtatctgc gaaaccgaca agaggaaaga cccgtcagag      1500
     acaaaattca tagtacttca aaagtatttg ttgcgcccaa agtagatgca ttcaatgtca      1560
     gtcaactgag cataggttag cattctgtcc agtttttaat tcgctacctt ttattgagcg      1620
     atttaagatt gttaaaacag cgtcactttg tttaaattgc ctcaataagg gtcatccagc      1680
     ctcaaagtgt ccttcattga atagatgtcg tcattgtgga ggtttgcatc acacaaacat      1740
     gcataaggat tcaaacgtcc agggaaatta tcaactagat ggacctacta ttcatcatca      1800
     atcgcaacaa atcattcata atacacatga cgaaagtaaa acatttgcaa catcaatgtt      1860
     gactcgccac gctcggcggg gattacttcc aacagcaata gttcttattc aagacaaact      1920
     tggtgagttt cagctcgcaa gagcattact tgattcgtgc tctgagctta cctttataac      1980
     tgaagaatta gccaaaaggc ttcagcttcc gtttcgttac gatcattatg agattgctgg      2040
     aatcggtgaa ttacgtacac atatgaaaca ttccgtatct accaaaattc gttcaagaat      2100
     atctccagat gaatggaata tggagtttat cgtgactaaa tctatatctc tacctcagcc      2160
     tgaaaagaga ctagatgtgt caaattgggc cattcccaaa gaaattgagt tagccgaccc      2220
     attcttttat aagcccggaa aagtagatct attgcttagc gtaaaggagt tttttgatct      2280
     acttaaaact ggtaaaatta gtttaggaat tggtcttcct catctagtgg aaactgcatt      2340
     aggatggatc gtcgggggta agattgctga acctcaatca actcaacaat acacttgtaa      2400
     tttaacgcaa cagcaggacc ttaacatatt attagaaagg ttttggaaaa tggatgaaat      2460
     acatggaatt caaaataaag atatttcgtt aacctcagaa gaacaagcat gtgaaactca      2520
     ctttcaggtg cacacacaat tcctggattc agggcgcata caggttcggt tgcctttcaa      2580
     ggaatctcct gaacaacttg gagactcgtt gtcctgtgca aaaagacgtt ttcttcaact      2640
     cgaaagacgg cttgcatctc aacaccaatt aaaggaaatg tacatcgatt ttttagatga      2700
     atatcttaag ttgaatcaca tggaggtagc ttcgttagat aatttgcaat cgggaaatca      2760
     ttacattatt cctcaccatt gtgtccttag accgcagagc tcatcaacta aacttcgcgt      2820
     agtatttgac gcttcgtcta aatcatcatc aaatatatca ttaaatgata ttctcatggt      2880
     tggtcctact attcaacaag atctaatcct aacattactc tcgtttcgtt tgtatcgcca      2940
     tgctattaca gctgacataa caaaaatgta cagacaattt ctcgtcgcac ctgaggatag      3000
     aagtttccaa caaatcttgt ggagaaagtc accgcaagaa cctattcaat tatttcaatt      3060
     gaatactgtt acctatggga tgtcgtgcgc tccatttctc gcaatcaggt ccttaaagtt      3120
     tttatcagag acgtataagg agttgtttcc aattggagct gctgtattag ctgaggatat      3180
     gtacgtcgac gatctacttt atggagctga ctcaatcgaa gaactcaatg ctaagacgaa      3240
     tgaagttacc aaattgctct caaaggcagg cttagaattg acaaagtgga attttagtgg      3300
     ggcaccaaca gattatgaat ataatctcaa tattgacaat agtgatgtca ccaaggctct      3360
     tggcatgtcg tggctgccaa ctgaagatct tatattattt cgatttgatc ttccattaac      3420
     tgcaatacca acaaaacgaa aaatagtatc gatcatggcc aggctctatg atctgctagg      3480
     attattagcg ccagtcgtag tacgctacaa aatcttgatc caagacttgt ggatcgagcg      3540
     cttggactgg gacgacccgt tgccagagat cttacggact agatggcaac aacttgaagc      3600
     tgatttatct aatcttgaca tggttcgagt aaatcgattt gttaacacat caccaaaaaa      3660
     taagtgtgaa atccatggat tttcggatgc ctcaaatcga gcgtatggat gttgcatata      3720
     cgcaagggtt ttggacaacg gaaaatatgt aacttcattg atcatttcga gatcgagagt      3780
     tgcgcccact caatcgcaaa gcatacctcg tttagagctt tgtgcttccg ttttactctg      3840
     ccaaacatgg actaaaatca aacacaaatt aaactgtctt gtcagcaaaa catatttttg      3900
     gacagattca actgtcgttc tccattggat taaaatgcac ccatcaactc taaaatgctt      3960
     tattgccaat cgcgtatcaa ccatacaaac tcaatcgcag gatatcattt ggagtcacgt      4020
     gcctggaaag gataatccag ccgacattgt ttcacgtggc tgtgcagcgc gcgatttgat      4080
     gcagacaatt tggtttcatg gaccaaggtt cttaacactt gatgcattac attggccgaa      4140
     atctgaaaga aagacagatt tcgagcccaa agaattagaa ttgcgaaaca cccttgtatt      4200
     gaaatgtagc actagttata aagaaaagag catagttgag cagatcatta gtagactatc      4260
     atcgtttcgt atgattgtga gagtcttagc atacgtttta cgagttttca accgagttcc      4320
     tattaaccgc aataatacga taaatgctac aagaagcatt tcagtagaag aatttaaatt      4380
     ggcttttaat catataatct cttccattca gagtgatgtg tttgcgaaag aactaaagga      4440
     cttacaagca ggacgaagtc tgaagccgga gcttcaaaag ttaaatccat tcatctcaaa      4500
     tgaacagata ggttctcaaa atattcgact tatccgtgtt ggaggccgtc ttgcaatggc      4560
     tgacatacca ttggacgcta aaatgccgtt attgcttcca aagactcata atttcactta      4620
     taaatatatt gaagatcttc acttgcgaaa ccttcacgcg ggagctaagg ttttgatagc      4680
     gattctgcgc ctaacagtat ggattgtaaa tgctcgcgaa ctggtccgaa aggttgttag      4740
     aagttgtaca cattgctatc attacaaacc tgtattaatg cgacaaatca tgggtaacct      4800
     cccagctgac cgtctcctgg ccgaacgccc gtttctgata tgcggagtag atctatgtgg      4860
     accatttctt acgtcgtacc gcattcgaag caaagttcct tacaaaacat atttggccat      4920
     atttgtttgc ttttcttcaa aagctattca tacagaacta atctctgacc tatctgctaa      4980
     taattttatt ctctgtttga agcgattcat gaggcggcgt ggagtcccaa taagaatcag      5040
     gtctgataac gggacaaacc tagtgggagc atgttcgcaa cttgaaggct tcaaacggca      5100
     attctgttca gaactcaatg caaaaaatct ggaggaattt agccgaaatg ccggctttga      5160
     attcaatttc attccaccgc gtgctcccca ttttggaggc ttatgggaag ccgcagtaaa      5220
     gtcaatgaag actctgctca tcaaaaattt gacctcttct catttgacgt atgaagagct      5280
     tcaatcgatt gcaattgaag tggaggcgat attgaattcc cgtccaatat ccattcacag      5340
     cgatgatccc aatgacgggg aggctctgac gccagcacac ttattgatcg gatgttcact      5400
     gcaagcgatc cctgaaccgg tagtaaatga ctcaaaactt tcttatctat ctcgttggca      5460
     aagggtgacc tatctcaagc aacgcttctg ggaactctgg aagcgcgact atgtacatca      5520
     attacaagaa cgctctaagt ggttgcatcc cgaaaacaac atcgcaaagg atcaattagt      5580
     tctcatccat gaagacaatc tcccaccgca atgctggatt actggtcgtg tggtcgaagc      5640
     catacttggt gcagatggaa gggtcagagt agccgatgtt cgcaccaaga aaggaattat      5700
     tcgtcgccca atctgcaaac ttgctccatt gcctttaaga gatgacgttg atgtaaattg      5760
     aaggagtcat acttcatcct tcaatggggg agta                                  5794
//
ID   BEL-18_DWil-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_DWil_;
KW   BEL-18_DWil-I; BEL-18_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-279
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1794-1794 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 279 BP; 89 A; 47 C; 46 G; 97 T; 0 other;
     tgttggagga gacgtcattg ttaacttaga tttgtatata ttaaaatttc ttatattatt        60
     tgtttaagat tatcggaatt tctaccactg tatttacatt aacatgttct aaaagcttct       120
     gttacatggc tcatgaagag cttctaactc atgaaaacga aatataaaaa agacttcttt       180
     ctggaattcg aagaggagaa gacttaattt tcctcactcc actccacatg ctattgagca       240
     ttggagtttt gtaccatctg caactgggca gatcaaaca                              279
//
ID   BEL-18_MoPha-I repbase;    DNA;    INV; 5473 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5473
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1144-1144 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..5391
FT                 /product="BEL-18_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAEEIRILVQKRSVIKAKLTRFRTYLDSYTARPDIQQ
FT                 LRERLAKVRELWDKFDDIQTDIELLEPDGEFEERSEFEQYYFELVSKAEQH
FT                 CVSSTVTRPTSNDNIDTNVRRSERTVKLPTINLPNFDGDYNAWLCFYDNFK
FT                 STIHDNSDLKPVQKLQYLKSCLKGDAAQIIESLATSAENYEIAWNLVVERF
FT                 DNKRIIIQNHVRSLFELPNIAKESLTGLRALMDGALRHLRALKTLGLQTEH
FT                 WDAMLIQLIIFKVDRNTHKEWERSIDGTEMPSLEDLWKFLKNKCYVLENVD
FT                 AGFASQSKVSGRLPLMRDARNSNVRQSQNCMTVQERQQCPICNGSHNVYKC
FT                 EQLLRANCDERISLVKTARLCFNCLRPNHSANFCRFRPCSKCRRRHNDLLH
FT                 RSEIRAISNSEEKHENDIASQKSLQAVVASHVLLSTALVKIFDKFGNAYNC
FT                 RILLDSGSQSNFIVNSLVEKLKLTKRKINVPVSGFGQALTHIEHAVDAEIQ
FT                 SSDGRLNLNLTFLAIDEITEYLPAKYIDKSKLEIPRNIRLADPEFCKPSRI
FT                 DALIGAETFFHLLCVGQIRLSGGSIVLQKTKFGWIIGGRIYDRVRDDKETV
FT                 CNISIDKTSLQVAKFWEIEELSDIKHLSEEERNCEAHFRKFTVRDEEGRYC
FT                 VRLPFKGNVNKLGDSYKMAEKRLFSMERRLLSNEAQRAEYSRFLREYCELG
FT                 HMIEVTNCNAEKLTDGYFLPHHAVLKTDSLTTKLRVVFDASARSTTGVALN
FT                 DVLMSGPVLQEDVFSIVTRFRSYSYVLTADIEKMFRQVRLHQEDTKYQRIL
FT                 WRENPMESIRMYGLQTVTYGTRPGNYLAVRCLHQLAMDEEDDFPLASEVLK
FT                 RDFYVDDLLTGADNYERALQIRNELIQLLRRGGFHLRQWASNTSSLIDDLG
FT                 ERSDIEHLCLGGEDSVKTLGIQWRCKDDTIIYIMNTRINGNERLTKRTLLS
FT                 QIAAIFDPLGLLGPIIVKAKIVMQLLWQLKLEWDETVPMDIFTLWNEYKTQ
FT                 LNSINGFSFPRRIMLGDSDLQLHGFCDASEKAFGACIYLRSTSQTGDRMVR
FT                 LVCAKSRVAPLKKVSLPRLELCAAVLLANLYKVTSGSLKRDFRSIHFWSDS
FT                 TIAIHWIHSSPHRLKTFVANRVAQIQTTTEKSYWRYVPSQQNPADPLSRGQ
FT                 MPEAFAQNQLWKNGPDWLMADEDEWPANLVEEIVVPEQRSTVNLQTAISAD
FT                 FVERFSSVFLLTRVIAYCLRFVHNCRKKEKRTGSITTEELREATNCVILAV
FT                 QANAFANELYNLRHGRPLHSKSRILALNPFIDNVGILRVGGRLQNADMRYA
FT                 RKHPILLPNNNHFTKLIFKYVHISNYHCGVQATLYAVRQNYWAVRGKDIAK
FT                 YTVRTCMRCFRFAAPAPKYQMGNLPMDRVVSDRPFEKVGVDYCGPFYIKEK
FT                 RYRNKNKIKVYVAVYICFATKAVHLEVVSDLTTEAFIASLRRFFARRGKAG
FT                 IIYSDNATNFTGANNELKDLHKLYNSKEHIDNLQRFCVDRGVKWNFIPPRS
FT                 PHFGGLWEAAVKGFKHHMRRTLGETLFTFEEFNTFVIEIEGVLNSRPLTAL
FT                 SSDPNDCLALTPAHFLIGTSLSDIPEVDLTDVPTNRLSIWKHIQKIKQNFW
FT                 RRWSKEYLNELQQRTKWLNSHASCIKPGILVLIKDDNTAPLQWSMGRIVAV
FT                 HPGDDNIVRVVTVKTQNGTYKRNVRALAPLPIE"
XX
SQ   Sequence 5473 BP; 1700 A; 932 C; 1286 G; 1555 T; 0 other;
     tatggtcctt cgagccggat gtgttaaata attttaacgg attttaattc ttggaacaca        60
     cgtaatggaa agtgctggat gtgcgtgatt gcagcggcat aatgcgaatg taataaatac       120
     ggacaagaga tattgtggat gccgactcat cagtgtttta attagtataa gtgagtatta       180
     tttaaacgac gcaaatttgt tgagatattc attgtagata gcggttgcta agactcgaac       240
     taaggctaat cggagttaaa ttataaaaat attgtaacca tcgtgatggc tgaagaaatc       300
     aggattcttg tacaaaaacg gtcagtcatc aaagctaaat taacaagatt taggacatat       360
     ctcgattcgt atacagctag acccgatata cagcagttga gagagcgttt agccaaggtc       420
     agagaattat gggataagtt cgatgacata cagacggata tagagctact tgagcctgac       480
     ggtgagtttg aggaaagaag tgagttcgag caatattatt ttgaacttgt atccaaggcc       540
     gaacaacatt gtgtttcgtc gactgttaca cgaccgacaa gcaatgataa tatagatacg       600
     aacgtacgta gatcggaacg caccgtaaag ttaccgacga ttaatctgcc taattttgat       660
     ggtgactata acgcgtggtt atgcttctat gataatttta aatcaactat acatgacaat       720
     tctgatctta agcctgtgca gaagctacaa tatttgaaat cgtgtttgaa gggcgatgct       780
     gcacaaatca tagagtcact cgcgacatca gccgaaaatt acgagattgc ttggaatctg       840
     gtcgtggaac ggttcgacaa taagcgtata ataatacaga atcatgtaag gtctttattt       900
     gaattaccaa acatagccaa agagtccttg acaggtttgc gagcgttaat ggacggtgcg       960
     ttgaggcact tgcgagcact caaaacttta ggtttgcaga ccgaacattg ggatgcgatg      1020
     ctgatccagt taataatttt taaggtagac aggaatacgc acaaggagtg ggagcgttca      1080
     attgatggaa ctgaaatgcc ctccttggag gatttatgga aatttctaaa gaacaaatgc      1140
     tatgtactag aaaatgtcga cgctggattt gcatcgcagt ccaaggttag tggaagactg      1200
     ccattgatgc gggatgcaag aaatagtaat gttagacaat cgcaaaattg catgaccgtc      1260
     caggagaggc agcagtgccc gatatgtaat ggatcgcata atgtatataa gtgtgagcaa      1320
     ttgttgcgtg caaattgtga cgaaagaata tcattagtaa aaacagcgcg tttatgcttt      1380
     aattgtttgc gtcctaatca ttcggcgaac ttctgtagat ttagaccttg ctcaaagtgc      1440
     agacgccgtc ataatgattt gttacatcgc agtgaaattc gagcgatttc gaactcagaa      1500
     gagaaacatg aaaacgatat tgcatcacaa aagagtctgc aggcagtagt tgcttcacac      1560
     gtacttttat ctactgcatt agtaaaaata tttgacaagt ttggcaatgc gtataattgt      1620
     agaattttat tggactctgg ttcgcaatct aattttattg taaattcttt agtagagaaa      1680
     ctaaaactga caaaacgaaa aattaatgtg ccggtgtcgg ggtttggtca agctcttacg      1740
     catattgagc atgcagtaga tgcagagata cagtctagcg atggtcgtct taatttaaat      1800
     ttgacttttc tcgcgataga tgagataacg gaatatttgc cagccaagta tattgataaa      1860
     agcaaactag agataccgcg taacataagg ctagctgatc ctgaattttg taaaccatcg      1920
     agaatagatg cgcttattgg agcagagact ttctttcatc tgttgtgcgt ggggcaaata      1980
     aggctcagcg gaggctctat cgtattgcag aaaactaaat ttggttggat tattggaggt      2040
     agaatttatg atagagtacg agacgataaa gaaacggttt gtaatatatc gattgataag      2100
     acgtcattac aagtagctaa attttgggag atagaggaat taagtgatat taaacattta      2160
     tcagaggaag aaaggaactg cgaagcgcat ttcagaaagt ttaccgttag agatgaagag      2220
     ggtagatatt gtgtcagatt accctttaaa ggaaatgtaa ataaattagg cgattcgtat      2280
     aaaatggcgg agaaaagatt attctcgatg gagcgacgat tattgtcaaa cgaagctcag      2340
     cgtgcggaat attcacgttt tttacgcgag tattgtgaat tgggacacat gattgaggta      2400
     acgaattgta atgcagagaa gttgacagat ggttatttct tgcctcatca tgctgtgtta      2460
     aaaactgata gtcttacgac aaaattgaga gtagtgtttg acgcttcagc caggtcaacc      2520
     actggcgttg ctttaaacga cgtgcttatg tcgggtccgg tattgcagga ggatgtattc      2580
     tctattgtca cgcgatttcg ttcatattca tatgtattaa ctgcggacat cgaaaagatg      2640
     tttcgacagg tgcgtcttca tcaggaagat accaaatatc aaaggatatt atggcgagag      2700
     aatcctatgg aatcgatcag gatgtatggt cttcaaactg taacctacgg cacgagaccg      2760
     ggaaattacc tagcagttag atgtctacat caattggcaa tggatgaaga agatgatttt      2820
     cccctagcat cggaagtttt gaagagagat ttctatgtgg atgaccttct cacgggagca      2880
     gataattacg agagggcctt gcaaattcgt aacgaattga ttcaactgct tcgtagaggt      2940
     ggatttcatc tgaggcagtg ggcttcaaat actagcagct tgattgatga tcttggtgag      3000
     cgatcggaca ttgaacatct ttgtttggga ggtgaagaca gcgttaaaac cttaggcata      3060
     cagtggagat gcaaggacga taccattata tatatcatga acactcgaat aaatggtaac      3120
     gagcgcctca ctaagcgaac attgctatca cagatcgcgg caatctttga tccacttgga      3180
     ctgttgggac caatcattgt taaagccaag attgttatgc aactgctctg gcagctgaag      3240
     cttgaatggg atgagacagt gcccatggat atatttacat tatggaacga atataagaca      3300
     caacttaatt ccataaatgg ttttagtttt ccgagaagaa taatgcttgg tgattccgac      3360
     ctacaactac atggattctg cgatgcaagt gagaaggcct ttggcgcatg catatatctg      3420
     cgttcaacca gtcaaacggg agatcgaatg gtgaggctag tgtgtgccaa atctagagtg      3480
     gctcctttaa aaaaggtctc tctgccgagg ttggagttgt gtgccgcagt cttactcgct      3540
     aatttatata aggttaccag tggctcactg aaacgagatt tcaggagtat acatttttgg      3600
     tcggattcca ccattgcgat tcattggata cattcatcgc ctcacagact aaagacgttt      3660
     gtggcaaata gagtagcaca aatacagact actacggaga agtcatattg gaggtatgtt      3720
     ccgtctcaac agaatcctgc tgatccattg tcacgtggac aaatgcctga agcatttgcg      3780
     cagaaccaac tgtggaaaaa tggaccggat tggttgatgg cggatgaaga tgaatggccc      3840
     gcaaacttgg ttgaagaaat cgtagtgccg gagcagcgat caactgttaa cttgcaaact      3900
     gctatatcgg ctgattttgt tgagagattt tcatcagtat tcctattaac aagagtaata      3960
     gcatattgcc tgcgcttcgt acacaactgt cgcaagaaag agaaacgaac aggatctatc      4020
     acaacagaag aactgcggga agcaacgaat tgcgtgattc tggcggtaca agcgaacgct      4080
     ttcgctaatg aattgtataa tttgcgtcac ggcagacctc tgcactcaaa aagtagaatt      4140
     ttggcattga atccgtttat agataacgtg ggaatattgc gagtgggcgg aagacttcaa      4200
     aatgctgata tgagatatgc tcggaagcat cccatattac ttcccaataa taatcatttt      4260
     actaaattaa tttttaaata tgtccatatt agtaattatc attgtggtgt tcaagctaca      4320
     ttatacgctg ttagacagaa ttattgggca gttagaggaa aggacattgc taagtatact      4380
     gttcgtactt gtatgagatg ctttcgattt gcagcacccg caccaaagta tcaaatggga      4440
     aatttaccga tggatagagt agtgagcgat cgcccgttcg agaaggttgg tgtcgactat      4500
     tgtggccctt tttatataaa ggagaagcgt tatagaaata agaataaaat caaggtttat      4560
     gtggccgtat atatttgctt tgctacgaag gctgttcatt tggaggtcgt ttctgattta      4620
     actacagaag cgtttattgc cagtttgcga cgattttttg ccaggcgtgg gaaggccgga      4680
     ataatttatt ctgataatgc gactaacttt accggagcaa ataatgaact aaaagatttg      4740
     cataaattat acaattcaaa ggaacatatt gataaccttc agcggttttg tgtcgacagg      4800
     ggagtcaaat ggaattttat accgccacgt tcaccgcatt ttggcggatt atgggaggcc      4860
     gcggtgaagg gatttaagca tcacatgcgt cgaacactcg gtgaaacatt atttacattt      4920
     gaagaattta acacatttgt aattgaaata gaaggtgtat tgaattcgcg accgctcact      4980
     gctctgtcct cggatccaaa tgattgcttg gctttgacgc ctgcacattt tttgatagga      5040
     acgtcgttgt cagatattcc tgaagtcgat ctcacggatg tgcccactaa cagattgtct      5100
     atatggaaac acatacaaaa aattaagcaa aacttttggc gtcgctggag caaggagtat      5160
     ttaaacgagc tgcaacagcg aaccaagtgg ttgaattcac acgcttcatg tattaaacca      5220
     ggaatcttgg ttcttattaa agatgacaac actgctcctt tgcaatggtc gatgggcagg      5280
     atagtggccg tgcatccggg agacgataac attgtgagag tggttaccgt aaagactcag      5340
     aatggtacat ataagcgaaa tgtaagagct cttgccccgc tacccattga ataaatcgtg      5400
     cagttattaa ttgtaaatta aaattttatc attaaattat cacattgttg agaaaatctc      5460
     aaggggggca gga                                                         5473
//
ID   BEL-18_MoPha-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-284
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1084-1084 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 284 BP; 82 A; 54 C; 57 G; 91 T; 0 other;
     tgttcgggct ctaacgagta tattgacgcg cctggaaagg ccagcgccga tgtggcgatc        60
     actcttatta ttatatttac ttgtattttc gacaacgacc tgtgagtcag tcggcatcta       120
     cgttttgaga ggcaagcacg caataaagag cacattttag taagatactg tgataaataa       180
     ttttggcggc atttccttaa cggaacggct gcattaatcc tgtctttcca ctcgatataa       240
     tttattatat tttattaatt tttaaacaac gacgggataa aaca                        284
//
ID   BEL-18_SiCu-I repbase;    DNA;    INV; 5915 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5915
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4992-4992 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..5884
FT                 /product="BEL-18_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MEKQPGEGDQDPQDNRRSSRANMGVPPGWHQDYVKTT
FT                 GSGFDSPPMASSTRVPVTAGRTAQDDAKSEKSMASHKSKGSDYLEDEIKEM
FT                 KRSIKRQTKMLATLISLRDDPDADEEGSQHLSDVEDQRGDEAEAAGGAGGA
FT                 SKSRIQEEFGDLEDNLSGCESYEEDEEEIANPTPIHGGGTERYVPTPTPRL
FT                 WKPSMPENAQDNPQVNKGKVTENPPRRPPRPRTDAQKPPGRSLWRAPVENT
FT                 QPPQPRPRRRNPGSNPGRSNPQPPPQGGGPSPPEASPTGVDALANALIHAM
FT                 RFQNQNTERFVARQSSSSNLPIFAGNPLDWPLFAHHYGQSTRDCAFSQSQN
FT                 MTRLEKALRGEARAAVKSLMIIPDNADAVMERLEQRFGRPEYVVHALIEMA
FT                 RKTASPKEGRLSNIVDFSNAVANLVSTVKSLQVPVHLENPQLLQELVDKLP
FT                 DTMKLQWGMHSVSRGGRNLEDFSTWIMEVAEAASLVSMPKFNLKEGRRNEN
FT                 TYAVVEETTGVTSSSNQSGSCIVCKKEGHVILTCDKFLAKTIDERWAFVKE
FT                 KNICFRCLRTGHGIKKCRSKATCRAEGCGRRHHSLLHGTLPKKEGDKKEKS
FT                 DEVKELNATMSTTSTTILRIIVVKLYGPAGEMTANALLDEGSSVTLISDKA
FT                 ASKLGLIGVADPLRIHWTDGSYQKDDDSRRVECWIGPHGEGEKFKLKRVRT
FT                 VSNLHLPAQRSDFEEVIQQHSHLQSTKMKYLPGERPLILIGQPHVHLTLAR
FT                 EVVEADGDSPVITKTKLGWVLHGPSNGVTGQDSLFSCFHETDDDLIHNLVK
FT                 ESFALDSIGIVPAVTARSREDKEAEAKMKQMTRRTGERWETGLLWRKEPCV
FT                 LPRSRDVAYHRLISIERKLRRNPDIREQYHQKIKHYLDRGYARKLGPEELA
FT                 VPTDVEWYLPHFDRQHPNKPGKIRIVFDAASRASGVSLNDYLLTGPDLLRS
FT                 LPGILLQVREKKIAFSGDITEMFHQIRIRKEDCPAQRFLFRENEEEDVSVF
FT                 QLDVMMFGSVCSPYCAQYVKNVNALEFQEEFPAAVEAIISKHYMDDYLQSV
FT                 DTETEAEQLVKEVTEVHRRGGFHIGKWVSNSKNLLANIVGAEAEKDSKDLS
FT                 EWSEVPTERALGLHWNPEADIFTFRVNLNRAGKGIATGEAVPTKRAVLRLL
FT                 MLVWDPLGFLGHFLIKAKILLQDLWKLKVGWDDEIPGTVEKKWILWIQDLP
FT                 KLPKVKIRRCYSEDASSSPDVQLHIFADSSELGGCCVAYLRVLEKNGNIAV
FT                 TFVMSKTRVAPVRPCSIPRLELHAALMASRLAKFIRDHLGIKIHRSVYWTD
FT                 SMTTLRWIRSEARKYQQFVAFRVGEIQENSEVGDWRWVPSKLNPADDGTRE
FT                 GKANLGEDARWWTGPPFLKMDECEWPTETKCAGEKLEDESLELRREFTAIV
FT                 IETPXFVLPEISRFSQYLRLVRAAAWILKFLECIRNGGKKSNXLXIRQAEV
FT                 KLFVRSQWEEYPKEMKLLLDGQEIPQSSPLFQLSPILDKDGCLRMKSRLVT
FT                 AKEEGIRLPIILHPKNALTRLLMEHYHKIFAHQGEDTIRNELRQRFWIPRL
FT                 RNSLRSVIRDCRTCKLRKARGQPPVMGALPDFRLQPQTRAFVICGMDYFGP
FT                 MEVTIGRRREKRYGVLFTCLTTRAVHLEIAQSLTTDSCIMAIRRMVSRRGQ
FT                 PSQIHSDNGTNLRGADKELRLSLEEMDQDRMTSELTAKGIDWHFIPPSSPH
FT                 MGGSWERLVRSVKSAMRVILKSRAPXEEVLQTVFTEAEAIVNSRPLTDVPV
FT                 EAESPEALTPSHFLIGSSSSCLPPGQFDEGDLNLRKMWRKSQALADMFWRR
FT                 WVKEYLPTLQRRQKWHGGKPSVETGDVVVVLDESLKRSSWPLGIVTGVFPD
FT                 KKGTVRVAEVKTAHGVYRRPVVKLGKLDIKSPGDQD"
XX
SQ   Sequence 5915 BP; 1674 A; 1351 C; 1669 G; 1211 T; 10 other;
     tagtttggtc cttcgagaat ttcttgacgc gctgtggaga tacagaccat agttcgacgc        60
     tttggaggtc aagttcgagg tggaccaccg cagatcttgg agagttccac tacccagccc       120
     ggagaagcag tcaagccaat tgtagggggt acccacaatg gagaagcagc cgggagaagg       180
     ggatcaggat cctcaagata accggaggag cagccgtgcg aacatgggcg ttcctccagg       240
     gtggcaccaa gattatgtca agaccactgg aagcggattt gacagccctc caatggcctc       300
     ctcgaccaga gtacctgtca cggctgggag gaccgctcaa gatgacgcca aatcagagaa       360
     gtctatggcg tcacataagt ccaaagggag cgattacctg gaggacgaga ttaaggagat       420
     gaagcggtcc atcaagcggc agacgaagat gctcgcgact ttgataagcc tgcgagacga       480
     cccagatgct gatgaggaag gatctcaaca tttgtcagat gttgaagatc aacggggaga       540
     tgaagccgaa gctgctggtg gagctggagg agcctccaaa tcgaggatcc aagaggaatt       600
     tggggacctg gaggacaact tgtcggggtg cgaatcatat gaggaggatg aagaagagat       660
     tgccaatcca actccaattc acggaggagg aacggaacgt tacgtcccaa cgcctacgcc       720
     aaggctgtgg aagccgtcca tgccagagaa tgctcaggac aatccacaag ttaataaggg       780
     gaaggtaacg gaaaatcctc ctcgcmggcc gcctcgaccc cggacagacg ctcaaaagcc       840
     tccaggccgt tccttatgga gagctccagt agagaatact cagccgccgc agccgaggcc       900
     aagaagaagg aatccaggtt ccaacccagg gaggagtaat cctcaaccac caccgcaagg       960
     aggaggacca agtccacctg aggcgtcgcc aacaggagtg gatgcactcg caaatgctct      1020
     gatccatgca atgcgattcc agaaccaaaa tacggaaagg ttcgtggcac gtcagagctc      1080
     cagcagtaat ctaccgatat ttgctggaaa tccgttagat tggccgctgt tcgcgcatca      1140
     ctacggacag tcgaccaggg attgtgcatt ctcacaatcc caaaacatga ccaggttgga      1200
     gaaggcccta cggggggaag caagagccgc tgtcaagtca ctgatgataa ttccagacaa      1260
     cgccgacgca gtcatggaac gtctggagca gcggttcgga aggccggaat atgtggtcca      1320
     tgccttaatc gagatggcac ggaaaacagc atcccccaaa gaaggaagac tttccaacat      1380
     tgtggatttt tccaatgcag ttgcaaatct tgtgtcgaca gtcaaaagtc tccaggttcc      1440
     agtgcacctg gaaaatcccc agttgctaca agagctggtg gataaattac cggacacaat      1500
     gaagctgcag tggggaatgc attccgtgtc aagaggggga cgaaacttgg aggacttctc      1560
     aacctggatc atggaagtgg cggaagcggc tagcctggtg tcaatgccca agttcaatct      1620
     gaaggagggc agaagaaatg aaaatacgta tgcggtggtg gaggagacga caggagttac      1680
     cagtagcagc aatcaatctg gatcctgcat cgtctgtaaa aaagaaggcc atgtcatcct      1740
     gacatgtgac aagttcctgg cgaagaccat tgacgaaaga tgggccttcg tcaaggagaa      1800
     gaatatttgt ttccggtgcc ttcggactgg acacggtatc aagaagtgcc gttcgaaggc      1860
     gacctgccga gctgagggat gtggacgtcg tcaccactct ctattacacg gtacgctgcc      1920
     aaagaaggaa ggggacaaga aagaaaaatc agatgaggtg aaagagctga atgccacgat      1980
     gagcaccacc agcacaacaa ttttgcgaat tattgttgta aagctatatg gtcctgctgg      2040
     tgaaatgact gccaacgcac tcctcgacga gggttcaagt gtgacgctca tcagtgacaa      2100
     ggccgcctca aagctgggac ttattggagt cgcagatccc ctccgaattc attggaccga      2160
     tggcagctac caaaaagatg acgactcgcg ccgtgtggaa tgctggatag gacctcatgg      2220
     ggaaggcgag aagtttaagt tgaagagggt acggacggtg agcaatctcc accttccagc      2280
     ccagaggtca gatttcgaag aagttatcca gcagcacagc cacctccaga gtaccaagat      2340
     gaagtacctg cctggggaac gaccacttat cctcattggg cagcctcacg ttcacctgac      2400
     attggcaaga gaagtcgtag aagctgatgg agactcacct gtcatcacca aaaccaaact      2460
     gggatgggtg cttcacgggc caagcaatgg agtaactgga caagactcac ttttttcgtg      2520
     tttccacgag acggatgatg acctaatcca taatctcgtg aaggagtctt ttgcgctgga      2580
     cagtattgga attgtaccag ccgttactgc caggtcccgt gaagacaaag aggcggaagc      2640
     caagatgaag cagatgacaa ggagaacagg tgaacggtgg gagactggac tactctggag      2700
     gaaggagcca tgcgttctac cccggagccg tgatgtcgct tatcatcgcc tgataagcat      2760
     tgagagaaag ctgagacgca acccggacat tagagagcag tatcaccaga agataaaaca      2820
     ttacctggac agaggctatg caagaaagct gggccctgaa gagcttgctg tgccaactga      2880
     cgttgagtgg tatttaccac attttgatag acagcaccca aacaagccgg ggaaaatacg      2940
     gatcgtcttt gatgccgcca gccgtgccag tggggtaagc ctaaatgatt acctcctcac      3000
     tggaccagat ttgctgaggt cgttgccagg gatactgctc caggtccggg aaaagaagat      3060
     tgcgttctca ggggacatca cggaaatgtt ccatcagatc cgaataagaa aagaagactg      3120
     cccggctcaa cgcttcctct tccgagagaa tgaagaagag gacgtctccg tgttccagct      3180
     tgacgtgatg atgtttggct ctgtctgttc gccttactgt gcccagtacg tcaagaatgt      3240
     taatgcgctg gagttccaag aagagtttcc agcagcagtt gaagcaatca tatccaaaca      3300
     ttatatggat gattacctgc agtcagtgga cacggagacg gaggcggagc agctagtaaa      3360
     agaagtgacg gaagtccata gaagaggagg cttccacatt gggaaatggg tcagtaattc      3420
     gaagaatttg ctggcgaata ttgttggagc agaggcagaa aaggattcca aggacctgtc      3480
     agaatggtct gaagtaccwa ccgaacgggc actaggactt cactggaatc ctgaagctga      3540
     catattcact ttcagagtga acctcaaccg tgcaggaaag ggaatcgcca caggagaagc      3600
     agttccaaca aaaagagctg tacttcgcct cctgatgctg gtatgggatc cccttggttt      3660
     tttggggcat ttcctaataa aggcgaagat cttactccag gacctgtgga agctgaaagt      3720
     aggctgggat gacgagatcc caggcacggt tgagaagaaa tggatccttt ggattcaaga      3780
     tctgccaaag ctgcccaagg tgaagatacg aaggtgctac tctgaagatg ccagttccag      3840
     tccagatgtc cagcttcata tttttgctga cagctcggag cttggaggat gttgtgtggc      3900
     ctacttgcga gtactggaga aaaatgggaa cattgcggtg acgttcgtga tgtccaagac      3960
     cagagtagca ccagtgcggc catgttcaat tccaagattg gaattacatg ccgccctcat      4020
     ggcttcccgg ttggcgaaat ttattcggga ccatttggga atcaaaatcc accgtagcgt      4080
     atactggacg gactccatga cmactctgag gtggatccgt tcagaggcca gaaagtacca      4140
     gcagtttgtc gcctttcgag ttggggaaat ccaggaaaac tcagaagttg gagactggag      4200
     atgggttcca tcaaagttaa atccggcaga tgatgggact cgggaaggca aagcaaacct      4260
     gggagaagac gctcggtggt ggacaggacc tccatttctg aagatggatg aatgtgaatg      4320
     gccgacggaa acaaaatgtg ctggagagaa actggaggat gaaagtcttg aattgcgcag      4380
     agaatttacg gcaatagtca ttgaaacgcc tawattcgtc ttgccagaaa tatcccggtt      4440
     ctcccagtac ctccgtttgg tccgtgcagc agcctggata ctcaagttcc tggaatgcat      4500
     cagaaatgga gggaagaagt ctaacttsct ggamattagg caggcggagg tgaagctgtt      4560
     tgtcagaagt caatgggaag aatatccaaa agaaatgaag ttgcttttgg atggacaaga      4620
     aattccacag tccagcccat tgttccagct ctcacctata ctggacaagg acgggtgcct      4680
     cagaatgaaa tcccgccttg tgaccgccaa ggaagaggga atccgcctgc ctattatcct      4740
     gcatccgaag aatgcattga ccagactctt gatggagcat taccacaaga tattcgccca      4800
     tcaaggagaa gacaccatcc gaaacgagct aagacagcgt ttctggattc cacgtctgag      4860
     gaattcatta cgcagtgtca tcagggattg ccgcacttgc aagctgagga aagcmagagg      4920
     tcaaccgcca gtgatgggag ccttgcctga tttcagactc cagccacaga ccagagcatt      4980
     cgttatatgt ggcatggatt actttggccc catggaggtg accattggaa gaagacgaga      5040
     gaagcggtat ggcgtcctct ttacgtgcct gacgacccga gcagtgcact tagaaattgc      5100
     gcaatccctc accacggata gctgcatcat ggctatccgt aggatggtgt caagaagagg      5160
     tcagccatcg cagatccaca gcgataatgg cacaaatcta aggggtgccg ataaggaact      5220
     gcgcctgtca ctggaagaaa tggaccagga caggatgacg agtgagctga ccgccaaggg      5280
     aatagattgg cattttattc ccccctcatc gcctcatatg gggggaagct gggaacgact      5340
     cgtacgatca gtcaagtcag ccatgcgggt cattctcaag tcaagagctc cakccgaaga      5400
     ggtactacag acggtgttca cagaagcaga agccattgtg aacagcagac cactcacgga      5460
     tgtgccagta gaagcmgagt ctccagaagc cttgactcca tcacattttt tgattgggag      5520
     ttcaagttcg tgcctgcctc caggacaatt tgatgaaggg gatctgaacc tgcgcaaaat      5580
     gtggagaaag tcgcaggccc tggctgacat gttctggaga agatgggtga aagaatatct      5640
     acccactcta caaagaaggc agaagtggca tgggggcaag ccatccgtgg aaactggaga      5700
     cgtggtcgtg gtactcgatg aaagtttgaa gaggagctct tggccattgg ggattgtcac      5760
     gggagtattt ccggacaaga aggggaccgt tcgagtcgcw gaggtcaaga cagcccatgg      5820
     tgtttaccgg aggccagtcg tgaagctcgg gaagctggac ataaaatctc caggcgatca      5880
     agattgaaga ttttgggaaa atcgggggga agata                                 5915
//
ID   BEL-18_SiCu-LTR repbase;    DNA;    INV; 706 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-706
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5015-5015 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 706 BP; 201 A; 118 C; 137 G; 250 T; 0 other;
     tgttctggag atttggttaa tatgtttaaa tttgtctaaa tattttctat tcatattttt        60
     tctcgaactt tgtttagaat attcgtatga aattatgggg ttattgtttg ttgctttcta       120
     ttctccatat tatgtaaagt catttccttt ccaagaaagc aataattgtt aagatttcct       180
     gttattccac atattatgta gaactacttc cggggaaagc ggtagtaact aattacgcta       240
     attttcgtta tctcttcatg aaatttaatg aagaattttc tttgttctta gagttaggaa       300
     aatctatttt tagatcgaat gtaaaatgtc ctgacattca tcccggaagt agagcaggta       360
     taaaaggaac gcgcaacttg taaaaattat tattattctt ggagaagtcc aagtgaacag       420
     tcatacgatc tgaactggaa acagctcagg tcaagaaggg acttgtgccg taacctgcaa       480
     gtctcttagt ctgaataaag tcactaatct gcggtcctat atttgtagag taccactggg       540
     ctttatttag ttttcattgc atatcccgga aagtttctcc cgtcgagaaa tcggcattgg       600
     gattccggat gattgacgcc gacgcgtctg gtccttcata tatgcatacc tctatgtatt       660
     cgcagattca aaactttgac tgagttgatc gaaaggggcg gataca                      706
//
ID   BEL-18_SpEx-I repbase;    DNA;    INV; 5542 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5542
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6898-6898 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           245..5503
FT                 /product="BEL-18_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSEEEYGETSFSNVGDLKKQRGSLKGRLTLFEKYISK
FT                 YENVKLSERQQVELSLRMESVTNVLTSFNKIQDKIEQLIDEVELDQQFEYR
FT                 EAFENQYFSIMSIAKCLTDVVKVQGKCNNTEGMQNKSSIKLPQIVLPTFDG
FT                 SYDHWLEYKNSYLSMIHKRTDLDAIQKFHYLKSSLTGSALQIISALEFTAA
FT                 NYTHAWELLENRYHNNRLLIHNHVKSLFTAQSIKTESPSLIRKLIDVVLRN
FT                 LRALKSLDEPTDTWDTLVIYIIVSKLDSTTEREWENYKGTISPDLNKVKIK
FT                 LDDLLCFLRNRADMLDMVHNSTRHTNNKPNNTSEVKKYTSTAQIAQLHSYV
FT                 STRNNTTKHEKSKNVCVMCGEKHALFICFKFLNLTVLDRIKFVENTKDLCR
FT                 NCLRTGHTLSECLFGPCKQCKDKHNTLLHKNKSHVIASVPAASTANVDKEP
FT                 VSVVSCALNSLDDTNASPIENASCVLLPQVLLSTAIVEVLGNDNKYYTARA
FT                 LIDGGSQNSFISESLCQRLNVSLIQSTIQISGVGQSVSHCNNLCDITMRSK
FT                 TSNFNIQLKCYVLPGITTSLPASHIYYDTLLIPENIRLADPTFNIPSEIDL
FT                 LIGADVYGDLLEVDRIRLSNGPYLQNSKVGWLISGPIFTNNLRCNKVHCNF
FT                 TQQSNIDTHLRKFWELEEIENSVLVFTEEERQCEEFFIKTTTRDKSGRFSV
FT                 RIPLKESADVLGDSYERAKSRFESLERKFEKSPSYKRLYSDFIREYIDLGH
FT                 MSRISEYARPHYFLPHHGVLREHSTTTKLRVVFDASAATTSNKSLNDIQMI
FT                 GPPLQNDIFSILLRFRQYKYVASADVEKMYRQILVHPAQRDLQLILWRENT
FT                 SDELNVYRLNTVTYGTASAPYLSMRCLRQLAQDTDDKIIARVINEDFFVDD
FT                 LITGEDDPQVLLNICEKTSEILRSACFPLRKWTFNYNVNNEIFKDLSSGEH
FT                 CQNKTLGLGWQVDTDVLYFTTNVENISRVTKRLMMSVISQIYDPLGLLAPT
FT                 IIIAKIMLQKLWLCKIDWDDAVPNDTECLWNRFIQSLSSLENIRVPRYVMS
FT                 EHALNCELHIFTDASQNAYGACAYIRTYSDKSSVSVKLLCAKSKVAPVKIV
FT                 CTIPRLELCGALLGARLYRKIISSLRLTFTKVCFWTDSTIVMGWIRMPPHN
FT                 LKTFVQNRVSQINDLTGDAIWLHIKGADNPADIVSRGLHLNELQNNYLWWH
FT                 GPAFLLRHDVEWSSKVDIDNEKLPELKIQHLSMVCSNQNSDCLVDFNRFSS
FT                 FNRLRRTAAYVLRFIGNTRVSKHCRITGFLSIEELDAATNMLVRLAQLQSF
FT                 NTEYNDLVKKSVVKSKRIVGLDPFLDEFKLIRVGGRLSNCNSFDYNKKHPI
FT                 LLCSKHRLTALIFAHEHKQLLHCGPQQLLASVRETWWPLGGRNLARKTVHN
FT                 CVTCTRIRGNTLQPLMGNLPAKRLEAGFPFMRCGVDYAGPVMILNRRGRGA
FT                 SVTKGYICLFICLCTRCIHLELVTSLSTKDYILALKRFISRRGKPAEIMSD
FT                 NAKNFVGAERELVSFLENNYSDINNFTSNNSIKFSFIPPYAPHFGGLWEAG
FT                 VKSCKHHLRRVIGSANLTYEELSTVLAQVEAILNSRPLTALSTDPNDLQPL
FT                 TPAHFLIGRPLTAPACRDLTEISSHRLIRYDVIEQMRQMFWKRWAKEYVAE
FT                 LQTRTKWKTRHQSIAINQLALIKDENLPPLKWNLGRVIRIHPGADGIARVA
FT                 DLMTSSGIIRRAFSKICPLPVPPAIDETDELPC"
XX
SQ   Sequence 5542 BP; 1719 A; 1068 C; 1130 G; 1625 T; 0 other;
     ttggtccatc gagccacata gaagcatcgc atcgcatcga gaatcagcaa gaaacggcca        60
     ggctggttgt tcctgttcct cccatccatc ccttagaatg tctaatatcg tgctgtgttt       120
     ttaaaattac agtgttcgta aacctaccga gttgttggtg tgcagtacgt ggtgcctatc       180
     aacttgtatt cgctgtgggt gtttaaacgt gagtaaccat tttgtctctt tgtaagccac       240
     caaaatgagt gaagaggaat acggtgaaac tagtttttca aatgtaggtg atctcaaaaa       300
     acaaaggggg tctttaaaag ggcgattaac gttatttgaa aagtatataa gcaagtacga       360
     aaatgttaaa ttatcggaac gacaacaagt tgaacttagt ttacggatgg aatcagttac       420
     taatgtcctt acgtctttta acaaaattca agataaaatc gagcaattaa tagatgaggt       480
     tgaattagac caacaatttg aatatagaga agcctttgag aaccaatatt ttagtattat       540
     gtctattgca aaatgtttga ccgatgtcgt aaaagttcaa ggcaaatgta ataatacaga       600
     gggtatgcaa aataaaagtt caattaaact acctcaaatt gtcctcccca cattcgacgg       660
     ttcatatgat cactggctcg agtataagaa ttcttattta tctatgatac ataaacggac       720
     cgatttagat gcaattcaaa agttccatta cctaaagtct tcgcttactg gttccgcact       780
     ccaaataata agtgcattgg agtttactgc tgccaattat actcacgcat gggagctttt       840
     agaaaatagg taccacaata accgattgct aatacacaac cacgtcaaat ctttgtttac       900
     tgcacaatct attaaaacag aatctccgtc gttaattagg aaattaattg atgtagtttt       960
     acgtaacctg cgagcgctta aatctcttga cgaaccgact gacacctggg acactttagt      1020
     tatttatata atcgtttcga aactggattc aactactgag cgtgaatggg agaattataa      1080
     gggcaccata tcgccagatc ttaataaagt taaaataaag ttagatgatt tgttgtgttt      1140
     tttacgtaat cgtgctgata tgttagacat ggttcataac agtactcgac atacaaataa      1200
     taagcctaat aatacgtctg aggtcaaaaa atatacaagt accgctcaaa tcgcgcaatt      1260
     acatagttac gtgtccacgc gtaacaatac gactaaacac gaaaaatcga agaatgtttg      1320
     tgttatgtgc ggtgaaaagc atgcattgtt tatatgtttt aaattcctta atttaacagt      1380
     tttagataga attaaatttg ttgaaaatac gaaggatttg tgtcgcaatt gtttacgaac      1440
     aggtcacaca ctatcagaat gtttgtttgg gccatgtaaa caatgcaagg acaaacacaa      1500
     tactttatta cataaaaata aaagccatgt tattgcatcg gtgccggctg cttcaacggc      1560
     gaatgttgat aaggaaccgg tttctgtcgt gtcatgtgct ttgaattctt tagacgacac      1620
     caatgcctcg ccaatcgaaa atgcgtcttg tgttttatta ccacaagtgt tattatctac      1680
     cgcgatagtt gaggtccttg gtaacgataa caaatactat acggctcgcg cgctaataga      1740
     cggtggtagt caaaattctt tcatttcgga aagtctttgc cagcgtttaa acgtgtcatt      1800
     aatacagtcc acaatacaaa tttcaggtgt aggacagtcg gtctcacact gtaataattt      1860
     atgcgatatt accatgcgat caaaaacgag caactttaat attcaattaa aatgttatgt      1920
     tctgccgggc attacaacga gtttgccggc atctcatatt tattatgata cgctattaat      1980
     cccggaaaac atacgacttg cggaccctac gttcaacata ccatcagaaa tcgacttgct      2040
     gatcggtgct gacgtttatg gggatttgtt agaagtggat agaattcgat tatcaaacgg      2100
     tccataccta caaaactcaa aggtaggttg gcttatttca ggtcctatat ttacaaacaa      2160
     tttacgttgt aataaagttc attgtaattt tacacaacag tctaatatag atacacactt      2220
     gcgtaaattt tgggagctgg aagaaattga aaattcggta cttgtattca ccgaagaaga      2280
     acgtcagtgt gaggaattct ttattaaaac aactacacga gacaagagtg gcaggttctc      2340
     ggttcgaata ccattgaagg aatcagctga cgtccttggt gattcatacg agagggcaaa      2400
     gtcacgcttc gagtcattag agcggaaatt tgagaaatcc ccttcatata aaaggttgta      2460
     tagtgacttt atacgggaat atattgacct agggcatatg tctcgaataa gcgaatatgc      2520
     acgaccgcat tatttcctac cacatcatgg ggtattacgt gagcacagca ctacaacaaa      2580
     acttcgggta gtgttcgatg ctagtgccgc aactacctct aataaatctt taaacgacat      2640
     acagatgata ggccctcccc ttcaaaacga catcttttct attttgcttc gtttccgaca      2700
     gtacaaatat gttgccagtg ctgacgtgga aaagatgtac aggcaaatac ttgttcaccc      2760
     cgctcaacgc gatcttcagc tgattttatg gcgggaaaac acatctgatg aattgaacgt      2820
     gtatagactt aatactgtga catacggaac cgcgtccgct ccgtacttaa gtatgcgttg      2880
     tttacgtcaa ctcgcacaag atacggatga taaaattatt gctagggtaa taaatgagga      2940
     tttcttcgtc gatgatttaa tcaccgggga agacgaccct caagttttat tgaacatatg      3000
     cgagaaaact tcagagattt taaggtctgc ttgttttcca ttacgcaaat ggacattcaa      3060
     ttataatgta aacaatgaaa tatttaagga cttatcgagc ggtgaacact gtcaaaataa      3120
     aacacttggt ttaggatggc aagtagatac agatgtactt tattttacca ccaacgtaga      3180
     aaacatatca agggtcacta agcgattaat gatgtctgtg atatcacaaa tttatgaccc      3240
     gttaggtctt ttagcgccta caataattat agcaaaaata atgcttcaaa agttatggct      3300
     ttgtaaaatc gattgggatg atgcggtccc aaacgatact gaatgtttgt ggaaccgatt      3360
     tattcaaagc ctgtcgtcgt tagaaaatat ccgggtccct cgttacgtca tgagtgaaca      3420
     tgcattaaat tgcgaactac acattttcac tgacgcatca caaaatgcat atggggcttg      3480
     tgcgtatata cgtacgtact cggataaatc atcggtatcc gtcaaattgt tatgtgccaa      3540
     gagcaaagtg gcccctgtaa aaatagtgtg tacaatcccg cgacttgaac tttgcggcgc      3600
     cttgctcggc gcgcgtctat atcgaaaaat tatttcttca ttaaggctaa cgtttactaa      3660
     ggtttgcttt tggactgatt ccaccatagt catgggctgg attagaatgc cacctcataa      3720
     tttaaaaacg tttgtccaaa atcgagtatc ccaaataaat gatctaacag gtgacgcgat      3780
     ttggttgcat attaaaggcg cagataatcc ggcagatata gtgtcgagag gccttcattt      3840
     aaacgaactt caaaataatt atctatggtg gcacggacca gcctttttat tgagacatga      3900
     tgttgaatgg tcgagtaaag ttgatataga taatgaaaaa ttgcccgaat taaagattca      3960
     acatctaagt atggtgtgta gtaatcagaa tagtgattgt ttagtagatt ttaatagatt      4020
     ttcttcattc aatcggctgc gtcggacggc agcttatgta cttagattca taggtaacac      4080
     tcgtgttagt aaacattgcc gcataactgg cttcttatct atcgaagagt tggacgctgc      4140
     aaccaatatg ttagtacggc ttgcacagct acaatcgttt aataccgaat ataacgattt      4200
     agtcaaaaaa tcggttgtta aatcaaaacg aatagtaggt ttggatcctt ttctggatga      4260
     atttaaatta atacgcgtcg gcggtagatt gagtaactgt aattcttttg attacaacaa      4320
     aaaacatccc attctgttgt gtagtaaaca cagactgacc gcgttgatat ttgcgcatga      4380
     acataaacag ttattgcatt gtggacctca gcagctcttg gcttctgtgc gtgaaacttg      4440
     gtggccactt ggtggaagaa acctcgctag gaaaactgtc cacaactgtg ttacttgcac      4500
     gcgaattaga ggaaatactt tgcagcctct catgggtaat ttacccgcta aacgcctgga      4560
     agctgggttc ccctttatgc gttgtggggt agactatgcc ggtccagtga tgatattgaa      4620
     tcgaagagga aggggtgcta gtgtcactaa aggttacata tgcctgttta tttgtttgtg      4680
     cacccgttgc attcatcttg aactagttac aagtttatca acgaaagatt atatacttgc      4740
     attgaaacgt tttatatcac gtaggggcaa gccagccgaa attatgtcag ataacgcaaa      4800
     aaactttgta ggtgctgaac gagaattagt ttcattttta gaaaataact atagcgatat      4860
     taataatttc acttcaaata acagcattaa atttagtttc attcctccgt atgctcctca      4920
     ctttggtggt ttgtgggagg caggggtgaa atcgtgtaag caccacctgc gccgcgtaat      4980
     tggttcagct aatctcactt acgaggaact cagcacggta ttggcacaag ttgaagccat      5040
     cctcaattcc cgtcccttga cagccctatc cactgatcct aacgacctcc aaccactcac      5100
     accagcccat tttcttatcg gccggccatt gactgctcca gcctgtagag atctgactga      5160
     aatatcgagt catcggttaa ttcgctacga cgtgattgaa cagatgaggc aaatgttctg      5220
     gaaacgatgg gcgaaggaat atgtggcgga actgcagaca cgcactaagt ggaaaactcg      5280
     tcaccagtct attgcaatta atcaactagc tttgataaaa gacgaaaatc tgccgccact      5340
     aaaatggaac ttaggaagag ttatacgaat tcatcctgga gccgatggta tcgcaagggt      5400
     ggccgacctt atgacgtcat cgggcatcat acgaagagca ttctcgaaaa tatgccccct      5460
     accagtacca ccagcaattg atgagaccga cgagctgcct tgttaatctt gttggaacct      5520
     actgcttcca aggccggggc ca                                               5542
//
ID   BEL-18_SpEx-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-268
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6926-6926 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 268 BP; 86 A; 52 C; 43 G; 87 T; 0 other;
     tgttaccggc aacgccatct actggcataa taagggacaa ttaatggtgt gaagttgcga        60
     cgcatgacgc ttgccgcgaa attggatttt ttttaaactg ttcgaacttc actctctaca       120
     tagcattgtg tcgagtcaca tctttttttt cacatttatt aaactattac tgttaaatta       180
     aaataaacga tttatctcac atcaataaac gaattattga agtactggag aataaaatta       240
     ctgaagcctc aaccctgctg ttcaaaca                                          268
//
ID   BEL-18_TrNi-I repbase;    DNA;    INV; 5572 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5572
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1025-1025 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..5377
FT                 /product="BEL-18_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTSQADQMLSILEDTAALLKKTQTNLKKCPKERLSKA
FT                 GYIQTRIETLEQYWNTFKQAHQDLLKCTTREQRGVLSYFVNEEFFIQEDLY
FT                 LCMLGDLKDLLAAHHKKTSDHSVCSNVSCEGPAKVKLPSIQLPAFSGNYEE
FT                 WPTYKDLFVSLIHECTRLSEVEKLHYLKTSITGEAASLLKHVHVTGANYVQ
FT                 AWEMLNHRYSNRRLIVNALLKRLFSLKKCTSQSAAQLKTLLDTTSEIINSL
FT                 ENLKVFTGSWDPIIVFLVVQKLDPESHKEWEQSACSVNPESLSTWKDLREF
FT                 LESTFRTLELVNPTTSTRTTKERVLHVSTSSNDQKKSCALCKDTHTLCHCN
FT                 AFNKMALNERREHVKTNKLCFNCLAAGHSVFKCRMPMSCRICKRRHHTLLH
FT                 QPKNTNELASHVEPQQATSSQADAEEKVQAMVASHHISGQKIALLATAVVI
FT                 LKSENGNTTALKALIDSGSQACFISEKATQILKLNKYPVNLIVSGMESMKV
FT                 RVKHEVEVQVLSRWEDNFNLPIKAYVMSKPLTSNINPSSVVTETDWPHLSS
FT                 IQLADENCFASGTIDLLLGVNEYVAILKQGLIKGPPGTPCAQNTHLGWILM
FT                 GGTTLNVNSRENSIQVMKQEVNIEDLLKTIWEIDVDSKRTPTLKEQLCENI
FT                 YKKTHKRVKEGKYIVRLPFNTENPKSAEGNTREIAKRRFVHLERRFSQNKD
FT                 LKQEYTKVIEEYKELKHMEEVPTKEMNSKSVYLPHHAVIRNDKETTKTRVV
FT                 FDASCKGSNGISLNDELLVGPILQEDLRSIIVRWRMHAICFASDIQKMYRM
FT                 VWIDREDADFQRILWRNDPSDDIKEYRLLTVTFGTASAPYLAIRTLMQLAD
FT                 DEGERFPEAARILREDFYVDDVMSGCDNLKEAVRISQDLKRLLKLGGFELK
FT                 KWSSNSREFMETIDPNERSSNAHLKLNVDGVIKALGIQWNLGKDQFEYSLN
FT                 LPPIGNVITKRSILSDIQRLFDPLGWIAPCLVMSKILIQQLWLEKVEWDEA
FT                 VNPTLAEKWSTIRSDLENVNGICINRWMGTSSSNKDCIEIHGFSDASVQAY
FT                 GAVVYCRVTYSDGSVKTSIVAARTRVAPLKTISLPRLELCGALLLSRLLKQ
FT                 IGKALRLPASQIYAWTDSSIVISWIFGDPNKWKTFIANRVVEITTNVKGSQ
FT                 WYHVKSDDNPADIASRGMTVANLKTCKLWWNGPDWLPQPKIQFTRPNILPT
FT                 ELERKKDTLQTLNMMHGENEEEKKLWTQFNDFDSLIQLLRTITYSRRFLKQ
FT                 KTYKEKINSPITTEELQLSLQTCIKKAQEEEFVDEINALKGKKTIKKSSKI
FT                 KSLNPYLDNAGILRVGGRLRNADLDEESKHPVILGRNSRLTVLLVAEAHTK
FT                 TLHGGTQLMLTYLRSKYWILRAKALAKRYVHRCLVCAKLTTKARTQVMGDL
FT                 PSVRVKPARAFLNSGVDFAGPFHILMSRGRGAKTSKAYICIFICMSTKAIH
FT                 LELVSDLSSAAFIGAFKRFCARRGKCTNIWSDQGRNFVGANKELVEAWKEA
FT                 HLQFDGEIAELLANDGTQWHFIPAYSPTFGGLWEAGVKSIKFHLKRILNTN
FT                 LTFEEMTTVLCEIEACLNSRPLCPSDDETTQPLTPGHFLIAEAPVVVPDHN
FT                 LKDIKISHLTRWQYTRKLLNDFWSRWQKEYLTRLQQRPKWLKREEEFKIGE
FT                 IVLIKQDNLPPGKWCMGRIIDKHPGPDGMTRVYSVKSGDNIVKRCVTKLCA
FT                 LPIDIED"
XX
SQ   Sequence 5572 BP; 1875 A; 1067 C; 1186 G; 1444 T; 0 other;
     tatggtcgac tatcgaaccg gattgaacat catcgcttac ctgagtcgcc ggccgcgaga        60
     acaatagaag acacattcca atgcgataag cgagcgccgg gtgctgttgt ttacgcaaaa       120
     ttaattagtg tgatttgata gaaaagtttg caattgagga tataatctca aaatttaaga       180
     ctgttcaacg tgaaccatga cttctcaagc tgatcaaatg ttaagtatac ttgaagatac       240
     agcagcgttg ctaaagaaaa cacagacaaa tcttaagaag tgccccaaag aacgtttatc       300
     gaaagcaggt tatatacaaa caagaataga aacccttgaa caatattgga acacatttaa       360
     acaagcacat caagacttat taaagtgcac cacgcgtgaa caacgtggcg tgttgtcata       420
     ttttgtcaat gaggagttct tcatacaaga agatctgtac ttatgtatgt taggcgatct       480
     taaagacttg ttggcagcac atcataagaa gacgtccgac cattctgtgt gtagtaacgt       540
     ttcatgtgaa ggtccggcca aggtcaagtt gcctagtata caattacctg ctttttctgg       600
     aaattatgaa gaatggccta cctacaaaga tttatttgtg tcattaatac atgaatgcac       660
     aagattaagc gaagttgaaa aattacacta tttgaagaca agcatcacgg gtgaagcggc       720
     atcattactg aaacatgtac atgtgactgg tgctaattat gttcaagcat gggaaatgct       780
     gaatcatcgt tacagcaata gacgcctaat agttaatgca ctacttaaac gattattttc       840
     cttgaagaaa tgtacctcac aatctgcggc ccagctgaaa actctcctgg acaccactag       900
     tgagatcatc aacagtttgg aaaatttgaa agtgtttacc ggctcctggg atcctataat       960
     tgtatttctg gtcgtgcaga agttggaccc ggagtcgcac aaggaatggg agcagtctgc      1020
     ttgttcggtg aatccagaaa gcttatctac ttggaaagac ttgcgcgagt ttttagagtc      1080
     tacattccgg acacttgagc ttgttaatcc taccactagt accagaacca caaaagaacg      1140
     cgtgctgcat gtttctacgt cttcaaatga tcagaagaaa tcatgtgctt tatgtaagga      1200
     tacacacaca ctatgtcact gcaacgcgtt taacaaaatg gcacttaatg aacgaagaga      1260
     acatgtcaaa acaaacaagc tctgtttcaa ctgcttagca gcaggacact cagtatttaa      1320
     gtgtcgcatg ccaatgtcct gccgtatttg taaacgacgc caccacacac ttttgcatca      1380
     acccaagaat acgaatgagt tggcttctca tgtagaacct cagcaagcga cgtcatcaca      1440
     agcagatgca gaagagaagg ttcaggcaat ggtagcgtca catcatattt ctgggcagaa      1500
     gattgcacta ttagctaccg cagtagttat tctgaagagt gaaaatggta acactactgc      1560
     attgaaggcg ctgatagatt caggatctca agcatgtttt ataagcgaga aggcaactca      1620
     gatcctgaaa ctcaataaat atccagtgaa cctaatcgtc tccggaatgg aatcaatgaa      1680
     agtcagagtc aagcacgaag tcgaagtaca agtattgtca cgatgggaag acaactttaa      1740
     cttacctatt aaagcctacg tgatgtctaa gcccttgact tcaaacatca acccctcaag      1800
     cgtagtcacg gagactgatt ggccgcattt atcaagcatc cagctcgcag atgaaaactg      1860
     ttttgcatct ggaactatag atctgttatt aggagtaaac gagtacgtag caattttgaa      1920
     gcaaggtctc atcaagggcc caccaggtac tccatgcgct caaaacactc acctgggatg      1980
     gatcctgatg ggtggaacta cattgaatgt taactctaga gaaaattcca ttcaggtcat      2040
     gaagcaagaa gttaatattg aagatttact caaaacaata tgggaaattg atgtagactc      2100
     aaagagaaca cctactctaa aggaacaact atgtgaaaat atctacaaga aaacacacaa      2160
     gcgtgttaag gaaggcaaat acattgtccg actacctttt aatacagaaa atccaaaatc      2220
     agctgaagga aacacgcgag aaatagcaaa aagaagattt gtgcatttag aaagaagatt      2280
     tagtcagaat aaagacctga aacaagaata tacgaaggtg attgaagagt ataaagaatt      2340
     aaaacacatg gaagaagtgc ctactaaaga aatgaacagt aaatcagttt acttaccaca      2400
     tcatgcggtg attcgaaatg ataaagaaac tactaagaca cgagttgtat tcgacgcatc      2460
     gtgcaagggc tccaacggca tttctctgaa cgatgaactc ctcgtaggac caatcctgca      2520
     agaagacctt aggagtataa ttgttagatg gcgtatgcat gctatatgtt ttgcctctga      2580
     cattcagaaa atgtatagga tggtctggat tgatagagaa gatgctgact ttcagagaat      2640
     tctgtggaga aatgatccaa gcgatgacat taaagaatac aggctcttga cggttacttt      2700
     tggaacagca tctgcgccat atctcgctat aagaacactc atgcaattgg cagatgatga      2760
     aggagaaagg tttcccgaag ccgcacgaat tttacgtgaa gatttctatg ttgatgacgt      2820
     catgtccggg tgtgataatt tgaaagaagc agtgagaatt agccaagatt taaaaagatt      2880
     acttaagcta ggtggatttg aactaaaaaa gtggtcttct aatagtcgtg aattcatgga      2940
     aacaattgat ccaaacgaaa gatcatctaa tgctcacctg aaactgaatg ttgatggagt      3000
     cattaaagcc ctgggtatac aatggaattt ggggaaagat caattcgaat acagcctaaa      3060
     cttacctcct atcggcaatg tcattacgaa gcgtagcata ctctcagata tccaacggct      3120
     attcgatcct ctgggatgga tcgcaccttg tcttgtgatg tcaaagattc ttatccagca      3180
     actctggctt gaaaaggttg agtgggatga agctgtaaat ccgacattag ctgaaaaatg      3240
     gtctacaatt cgatctgacc ttgaaaatgt aaacggaata tgcataaata gatggatggg      3300
     cacctcaagt tcaaacaaag attgtattga aattcacgga ttcagtgacg cgtccgtaca      3360
     agcatatggt gctgtagtgt attgccgcgt tacatactca gatggttctg taaaaacttc      3420
     tatagtcgca gcaagaacaa gagtagcccc cttaaagacc atatcgttac cacggctaga      3480
     attgtgtgga gctctactgt tatccaggct tttaaaacaa atagggaagg ccttgagatt      3540
     acctgcatca cagatatacg cgtggacgga ttcttcaatt gttatctctt ggatatttgg      3600
     agaccctaac aaatggaaaa cctttatagc taaccgtgtt gtcgagatca cgactaacgt      3660
     caaaggcagt cagtggtacc acgtaaaatc tgatgataat ccagctgaca ttgcatcaag      3720
     gggaatgaca gtagcaaatc ttaaaacatg caaattgtgg tggaacggac cagactggtt      3780
     accacaaccg aagatacagt tcactagacc taacatttta cctacagagt tagaaaggaa      3840
     gaaagatact ttacaaacgt taaacatgat gcacggtgaa aacgaagaag aaaagaaatt      3900
     atggacacaa ttcaatgact ttgattcatt aattcaatta ttgagaacaa tcacatacag      3960
     ccgacgattt ctgaaacaaa aaacatataa ggaaaaaata aactcaccaa ttacaactga      4020
     agaactccaa ctctccctgc aaacctgcat aaaaaaggca caagaagaag aattcgtcga      4080
     tgagataaat gcactgaaag gaaagaaaac aataaaaaaa tcaagcaaaa taaaatctct      4140
     aaacccttac ctggataacg ctggaatcct cagggtgggc ggtaggctca ggaacgcgga      4200
     cctagatgaa gaaagcaaac atcctgtaat cctcggtcga aacagtagac ttaccgttct      4260
     cctagtagca gaagcgcaca cgaagacgtt gcatggtgga actcaattga tgcttaccta      4320
     cctgagatcg aagtactgga tactgagagc aaaggcatta gccaaaaggt atgtccacag      4380
     atgtttggta tgtgctaagt taaccactaa agcaagaacg caagtaatgg gtgacttacc      4440
     gagcgtacgc gtgaaaccgg ctcgagcttt tcttaattca ggggttgatt tcgctggacc      4500
     atttcacata ttaatgagca gaggcagagg agcaaaaacc agcaaagcct atatctgtat      4560
     tttcatctgt atgtctacga aagcaatcca cctagagctg gtcagtgatc ttagttcagc      4620
     agcattcatt ggcgccttta agaggttttg tgctcgcaga ggtaaatgca cgaatatatg      4680
     gagcgaccaa gggcgaaatt ttgttggtgc caacaaagaa ctggtcgaag cgtggaaaga      4740
     ggctcatttg caatttgatg gagagattgc cgaattatta gctaacgatg gtactcagtg      4800
     gcattttata ccggcgtatt caccgacttt cggaggactg tgggaagccg gagtcaaatc      4860
     tataaaattc catttgaaaa gaattctcaa caccaaccta acatttgaag agatgacgac      4920
     ggttctctgt gaaatcgaag cctgtttaaa ttcacgtcca ctatgtccct cagatgatga      4980
     aaccacacag ccattgacac ctggtcattt cttaatagcc gaagcgccag tcgttgtacc      5040
     agatcacaat ttaaaggata ttaaaataag tcacctgaca cgctggcaat acacaagaaa      5100
     attgttaaat gacttttggt cgcgatggca gaaagaatat ttaaccagac ttcagcaacg      5160
     accgaaatgg ctaaaacgtg aagaagaatt taaaattgga gaaatagttc tgatcaaaca      5220
     agataatctc ccgccaggaa aatggtgtat gggtcgtatt attgataaac atcctggccc      5280
     cgatggtatg acaagggttt atagcgtcaa gagcggtgac aacatagtca agcgatgtgt      5340
     cacgaagttg tgcgccttgc ctatagacat agaagattaa ttactaaata tatatgatat      5400
     aatatgttat tgattaaatg cttatcttgc ccaccattta tagtgtaact atttctgttc      5460
     gctcttttga ttgttataag tgttatattg ttaattcatt ggacacttgt aatttgttaa      5520
     tgttaatttg ttttcttttg aaaggactgt aggtcctttg gtgggcggct ta              5572
//
ID   BEL-18_TrNi-LTR repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-18_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-152
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1053-1053 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 152 BP; 51 A; 34 C; 21 G; 46 T; 0 other;
     tgttaaggtt attataattc attcacatca ctcgcttaac tatcggtgcg agtatttttt        60
     aaagtagttg ccaataaaca tttgtacgag aaagacgtgt ttccttccac aaaaatcacc       120
     tcaagccaca atcaaccgta tcatccagaa ca                                     152
//
ID   BEL-190_AA-I repbase;    DNA;    INV; 6830 BP.
XX
AC   supercont1.75;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-190_AA_;
KW   BEL-190_AA-LTR; BEL-190_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6830
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.75; Positions  200286  193457.
XX
CC   Positions [5815-6372] - Integrase core
CC   'GAACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..6828
FT                 /product="BEL-190_AA-I_1p"
FT                 /translation="MQKSFVRQTRSKTRATEGAATSRSQPTRDDGARLNIP
FT                 EIVATVFEPSLVDIEHGDDNDCAECRRPNSAELYMVQCGCCKHWYHFSCAK
FT                 VDTVTARSREFVCAKCKALDPPPPASTRTGRSSGASSKRMQIARDLQRLEE
FT                 ERHLRERLEDERMQNEKLLVEKAMREKLEREKEYLDRKHELLRQQDEEALS
FT                 MRSSRSSRSQASSRHKVEAWFDQQQRLDSLILPLNQKDPEQVSANPPADPV
FT                 GSSTPVDMSKITDVELQQAPAGIMEAESVPRTTDSISIGESPGTEDDFRQV
FT                 QPQHNIERQPNVPSLPLVNLQPFIRLLEEANPTSTFVPKPINADPRIVKRV
FT                 MGPSLPYAVWQRETSEMRKQHAREQQCPEELEEPRNRHHREQELVDLLKRS
FT                 EEQREQDRLRMQEIEAMLTRQHAIEKQHQKENDVRRKREMELINQLKLIEQ
FT                 QYMQEKVKHDEERQSFLAKEQHLTEQLDFLRLQSRQPSTAEQHGKLTDPTC
FT                 QQGSTVSTNPPAAPVSSSQMEHFETSHLYETNPNRPTPCPSIASQYRRVGS
FT                 PQTPYVTPKLGPRQPDFIQAEPAQFDLFETAYPQPVLQAPTPHQMAARQVI
FT                 SRELPIFSGDPIEWPLFISSYNHSTEACGYSSSENLLRLQRALKGAAKEAV
FT                 SSFLLHPSTVPLIISTLQTLYGRPEQIVHNLVAKVRSTPAPKAERLETLIQ
FT                 FGLAVQNLCGHLKAVGMANHLSNPILLQELVDKLPANIKFSWALHQENLPM
FT                 VDLDSFSEYMRKVTNATSGVTNFCVTGKPTKDEKVKIKDKAFVNAHATYER
FT                 KDSKPATNPVSTDQREQIQDPKGKRSEGSKYCPVCSVDNHTTASCPVFKKL
FT                 SIDNRWNFVKENRLCRRCLVSHTRWPCEGEVCGINSCQKRHHRLLHYEPAK
FT                 KQCQQAVNSTDATVTIHRQPFSSTLFKILPVTLYGKNGSVNTYAFLDDGSS
FT                 ATLLEKTIANELGMSGSAHSLCIHWTSGINKKIATMELETFSISEPGSEKR
FT                 FNLSEVYTVENLGLPEQTLDFEQLTKEFEHLRHLPVKSFQRAVPGLLIGLS
FT                 NSHLLTTVKIREGKEQEPIAAKTRIGWAVCGRVRGGEKQFHHRQMHICTDS
FT                 FDHDLHDYVQEFFSVESLGVAIAPNLEGSEEQRARQILEETTVRTEGGKFE
FT                 TGLLWKHDLIEFPDSRPMAERRLRCLERRLEKNPQLYDSVRQQITDYESKG
FT                 YIHRVTNEEMSKFDPRRTWYLPLGVVLNPNKPGKIRVIWDAAAKVGGVSLN
FT                 TMLLKGPDFLTPQLSVTFKFREREVAFSGDIQEMFLQVGIRKEDRSALLFV
FT                 YRNSPREPMVTMASDVAIFGATCSPAQSQFVKNRNATENEEEYPRAAAAIK
FT                 NKHYVDDYLDSVDTEEEAVELALDVAKVHQKAGFHIRNWVSNRSSVLEAIG
FT                 EVNPVTVKNLSMNSQSGFERVLGMSWLPCEDVFCFTINVQDNLDAEIAPTK
FT                 RRMLGFVMKIYDPLGLVGSLVVQGKILLQDVWRAKVDWDEQIPEVLFARWK
FT                 QWMQILKEVNEVRIPRCYFPGYSPACYDTLELHIFVDGSAQAYSSAAYFRV
FT                 RDRGQIRCALVASKTKVAPLQLVSVPRLELQAAVIGARLRKSIEDGHSIKV
FT                 TRTYFWSDSSTVISWIKSDTRRYRQYAAFRVNEILSLSKAEEWRWLGTKSN
FT                 VADEATKWGKGPNCKSGSRWVRGPAFLHGEENCWPKDKFEIIDETQEELRP
FT                 AYVCSHFVAETIIDISRFSKYERLLRSMAYVHRFSNKLLQRMKRMPFEDTG
FT                 SISGEDLRNAERFLWRYAQSDVYPDEVALLKRNSHLTPNKRQSLCRSSSLA
FT                 NLPPVMDEHGLIRVDGRIAAADYVEYDAKFPVILPKGHPITSLLLDYYHRK
FT                 FRHANNETIVNEIRQKFYVPKLRTQVRSVAKRCQWCRIYKVVPEVPKMSQL
FT                 PRFRITPFVRPFTFVGIDYFGPYLVKVGRCAVKRWVAIFTCLTVRAIHMEV
FT                 VHSLSTDSCKKAVRRFIARRGAPQEVYTDNGTNFIGASKELNDELREIYNT
FT                 LGSSFTDTNTQWRFNPPAAPHMGGCWERMVRSVKTAIGTLPESRKLDDESF
FT                 ITLLAEAEHMVNSRPLTFLPLDSEEKESLTPNHFLMLSSNGVRQSIKMPVD
FT                 EKSALKGSWELIQNKLDYFWTRWTVEYLPIISRRSKWFKEVAPIEVGALVM
FT                 IADGKIRNQWIRGRVTRTYPGKDGAVRLADVETPTGVLKRRAVCKLAVLDV
FT                 CDRQEPAMSNGDIGNGHHGADRRGYGAVEPVFTRHEGE"
XX
SQ   Sequence 6830 BP; 1974 A; 1534 C; 1778 G; 1544 T; 0 other;
     atctcaaaga tttgagccat caccatgcag aaatctttcg ttcgtcagac gcgatcgaaa        60
     actcgagcca ccgaaggagc ggctaccagt cgttctcaac ctacccgtga cgacggtgca       120
     cggctcaaca ttccagagat agtcgcaaca gtcttcgaac cttcgttggt tgacattgag       180
     cacggcgatg ataatgattg tgccgagtgt agacgaccca atagcgcgga gttgtacatg       240
     gtacaatgcg gatgttgcaa gcattggtac catttctcgt gtgcaaaagt ggatacagtt       300
     acggcacggt ctagagaatt cgtttgtgcg aaatgcaaag cgttggatcc accaccaccc       360
     gctagcacgc gaaccgggcg atcgagtggt gcaagttcga agagaatgca gattgctcgg       420
     gatcttcagc ggttagagga agaaagacat ttgcgggaac gactggaaga tgaaaggatg       480
     cagaacgaga agttgctggt cgaaaaagcg atgagagaaa aattggaacg cgaaaaggag       540
     tatttggatc ggaagcatga attgcttcgc cagcaagacg aggaggcatt gagtatgcgg       600
     agtagccgta gcagtcgaag tcaagcaagc agtcgacaca aggtagaggc ttggtttgac       660
     caacaacaaa ggctcgattc gctcatcctt ccgttgaatc aaaaggatcc tgaacaggta       720
     tctgcgaatc cacctgcaga ccctgttggt tcatcaacac ctgtggacat gagcaaaatt       780
     actgacgtcg aactccaaca ggctccagct ggaatcatgg aagctgaatc cgttcctcgt       840
     accactgata gcatttccat tggagaaagc ccggggacgg aagatgattt ccgtcaagtt       900
     cagccacagc ataatataga acgacagcca aacgttccca gtctaccgtt ggtgaactta       960
     cagcctttca ttcgtcttct ggaggaagcg aatcccacaa gcacgttcgt cccaaaacca      1020
     ataaatgcgg atccaagaat cgtgaagaga gttatggggc catcattacc ctacgcagta      1080
     tggcaacgcg aaacaagcga gatgcggaag cagcatgctc gtgaacagca atgcccagag      1140
     gaattagaag aaccccgtaa tcgacaccat cgcgagcagg agttggttga tctgttgaag      1200
     cgttccgagg aacagcggga gcaggacagg ttgcggatgc aggaaattga ggctatgcta      1260
     acgaggcaac atgcaatcga aaagcaacat caaaaggaga acgacgttag gagaaagcga      1320
     gaaatggagt taataaatca actgaagctc attgaacaac agtacatgca ggaaaaggtg      1380
     aagcatgacg aagaaaggca atcgtttctg gccaaggaac agcatctgac tgagcagctg      1440
     gattttttgc gtctacagag cagacaacca tcgactgcgg aacagcacgg aaaactgacg      1500
     gatccaactt gccaacaagg ttcaaccgtg agtactaacc ctccagcggc tccggtaagt      1560
     agttctcaaa tggagcattt cgaaacaagt catttgtacg agacaaatcc gaatcgacct      1620
     acaccttgtc caagtattgc aagtcagtat aggagagtag gatcccccca gactccatat      1680
     gtaactccaa agttagggcc aaggcagcca gacttcattc aagccgaacc ggcgcaattc      1740
     gatctcttcg aaaccgccta tcctcaaccg gtgttacaag cccctacacc tcatcagatg      1800
     gcagcaaggc aagtcatatc gagagagttg ccgattttct ctggtgaccc catcgaatgg      1860
     ccacttttca ttagcagcta caatcattct accgaggcat gtggctactc ctcttcagaa      1920
     aacctgctac gtttgcaacg agctctgaaa ggtgcagcca aggaagctgt tagtagtttt      1980
     ctcctgcatc cgtctacagt gccactgatc atttcgaccc ttcagacgct gtacgggaga      2040
     cctgaacaga tagtgcacaa tcttgtagct aaagtgcgta gtacgcccgc tccgaaagca      2100
     gaaagactgg agacgcttat ccagttcggt ttggctgtgc aaaatttgtg tggtcattta      2160
     aaagcggtag gaatggcaaa ccatctttcc aaccctatcc tgcttcaaga gctggtggac      2220
     aagctgccgg ccaatattaa gtttagctgg gcacttcatc aagagaatct acccatggtt      2280
     gatttggatt cattcagtga atacatgagg aaggttacga acgctaccag tggagttacg      2340
     aacttctgcg taacaggaaa acctacgaaa gacgaaaagg tcaagataaa ggataaggct      2400
     ttcgtgaatg ctcacgcgac gtatgaacgg aaggattcaa agccagctac caatccagta      2460
     tccactgatc aacgagagca gatccaagat cctaaaggga aacgaagcga aggaagtaag      2520
     tactgtccag tatgtagcgt tgacaaccat actactgcga gctgcccagt cttcaagaag      2580
     ctttcaatag ataatcggtg gaattttgtg aaggaaaaca ggctgtgtcg ccgttgtctg      2640
     gtttcccata ctcgttggcc atgcgaaggt gaagtctgcg gaatcaatag ttgccaaaaa      2700
     cgacaccatc gactgctaca ctatgaacca gccaaaaagc agtgccagca agcagtgaac      2760
     tcaaccgacg caactgtgac tatccatcgt cagccctttt cttcaacatt gttcaaaatc      2820
     ctaccggtga cactgtatgg gaagaatggc tcagtaaata cgtacgcttt cttggatgat      2880
     ggttcgtctg caaccctcct ggagaaaacc atagcaaacg aattgggtat gagtgggagt      2940
     gcccattcct tatgcattca ttggaccagc ggaataaata aaaaaattgc gacaatggaa      3000
     ttggaaactt tcagtatttc ggagcctggg agtgaaaaac gcttcaacct ttccgaagtg      3060
     tacactgttg agaatctggg tttgcctgaa cagacgttgg atttcgaaca gctaacgaaa      3120
     gagttcgaac atttgcgtca tcttcccgtc aaaagcttcc agagggccgt tcctggattg      3180
     ctgattggat tgagcaattc gcatctgctg accaccgtaa agattcgaga aggcaaggag      3240
     caagaaccaa tcgctgcaaa gacccgtata ggatgggccg tctgtggtcg tgtacgaggg      3300
     ggagaaaagc aattccacca ccgtcagatg cacatatgta cagattcgtt cgaccacgac      3360
     ctgcacgact acgtccagga gtttttctct gtggagagcc ttggagtagc catagcccca      3420
     aacctggaag gtagtgagga acaacgagca cgccaaattc tcgaagaaac aacagtacgg      3480
     acagagggcg gtaaatttga aactgggcta ctttggaagc atgatttaat tgagtttccg      3540
     gatagtagac caatggctga gcgtcgatta agatgcctgg agagacgtct ggagaagaat      3600
     ccacagctat acgatagcgt gcggcaacaa ataacggatt acgagtcaaa agggtatatc      3660
     caccgagtaa ccaatgaaga aatgtcgaag tttgacccgc gccgcacttg gtaccttccg      3720
     ttaggcgtgg tactcaaccc gaacaagccc gggaaaatac gagtcatttg ggacgcggca      3780
     gcaaaagttg gcggagtatc tttgaacacg atgcttctaa aaggaccaga cttcttaaca      3840
     ccgcagctgt ctgtaacgtt taaattccgt gagcgggaag tggcgttttc cggcgacatt      3900
     caagagatgt tccttcaagt cggaatccgt aaagaagatc gcagcgcgct gttatttgtc      3960
     tatcgcaatt ctccaaggga gccgatggtg acgatggcgt ccgacgttgc tatcttcgga      4020
     gcaacttgtt ctccagctca atcacaattt gtgaagaacc ggaacgctac agagaacgag      4080
     gaagaatacc ctagagcagc ggcagcgatc aaaaacaagc attacgtcga cgactatctt      4140
     gatagtgtcg acactgaaga ggaagccgtc gagctagcat tggatgtggc taaagtccac      4200
     caaaaagctg gtttccatat ccgcaactgg gtttcaaatc gatcatcagt cctcgaagca      4260
     atcggtgaag tgaacccagt aacagtgaaa aatctttcga tgaacagtca gagcggtttc      4320
     gagcgggttc ttgggatgtc gtggctaccg tgcgaagatg tgttctgttt cacaatcaac      4380
     gtacaagaca acctggatgc tgagattgcg ccgaccaaga ggagaatgct tggcttcgta      4440
     atgaaaatct acgatccatt ggggctagtt ggctcgctag ttgtacaagg aaagatacta      4500
     ctccaagacg tctggagagc taaagtggat tgggacgagc aaattcccga agttctattc      4560
     gcacgatgga aacaatggat gcagattctg aaggaggtga acgaagtccg catacctcga      4620
     tgctactttc cgggatacag tccagcctgt tacgatacct tggaactcca catattcgta      4680
     gatggaagcg cacaagcata ttcctctgct gcttactttc gtgttcgaga tcgtggccag      4740
     atacgatgtg cgttagttgc ctctaaaaca aaggtagctc cgcttcaact agtttctgtt      4800
     ccacgattag aattgcaagc ggccgtaatt ggtgcacgtt tgcggaagtc catcgaggat      4860
     ggtcactcaa taaaagtcac acgcacgtac ttctggagtg attctagcac tgtcatttcg      4920
     tggatcaaat ccgacacccg tcgatatcgg cagtacgcag cgtttcgagt caatgagatt      4980
     ttaagcttat ccaaagctga agaatggcga tggttgggaa ctaagagcaa tgttgcagat      5040
     gaagccacca agtggggaaa aggaccaaac tgcaagtctg gaagtcgctg ggtacgtggt      5100
     cctgcctttc tgcatggtga agagaattgt tggccgaagg ataagttcga gataatcgac      5160
     gaaacgcaag aagagctgag accagcgtac gtgtgcagtc actttgtggc agagacaatc      5220
     atcgacatat cacgattctc caaatacgaa cggctgctac ggagtatggc gtatgtgcac      5280
     cgtttcagta ataagctttt gcaacgaatg aaaagaatgc cgttcgaaga tacagggagt      5340
     ataagtggtg aggatttgcg gaatgcggag agatttctct ggcgatacgc tcagtcagat      5400
     gtttatccag atgaggtcgc cttattgaag cgcaacagcc atttgacacc aaataaacga      5460
     caatcgctgt gtcgaagcag ttcgttagcg aatcttccac ctgtaatgga tgaacacgga      5520
     ctgatccgtg tggatggtcg aatcgctgct gcagactacg tagaatacga tgccaagttc      5580
     cctgtgatac tgcctaaggg acacccgatc acaagcttgt tgttggacta ttaccaccga      5640
     aagtttcgcc acgctaacaa tgaaacgatc gtgaacgaaa ttcgtcagaa gttttacgtg      5700
     ccgaaactaa gaactcaagt tcgatcagta gcaaaacgtt gccagtggtg ccgtatttac      5760
     aaagtcgttc cggaagtgcc gaagatgagt caactacctc ggttccgtat tacgcccttt      5820
     gtgagacctt ttacgtttgt aggcatagac tacttcgggc cttatctagt aaaagtcggt      5880
     cgttgtgcgg tcaagcgttg ggtagcgata ttcacgtgtc taaccgttcg ggctatacac      5940
     atggaggtag tgcattctct gtcaacggat tcgtgcaaga aggcagttcg acggtttata      6000
     gctcgccgag gagcgccaca agaagtgtac acggataacg gaacaaactt cattggtgcg      6060
     agtaaagagc taaacgacga attacgagaa atctacaaca ccttgggtag cagttttacg      6120
     gatacgaata ctcaatggcg gttcaaccca ccggctgccc cacatatggg cggatgttgg      6180
     gagcggatgg tccgatccgt gaagactgct attggaactt tgccggagtc gcggaagttg      6240
     gacgacgaat cgtttatcac cctactggca gaggcggagc acatggtgaa ttcgcgcccg      6300
     ttaacctttt tgccactcga tagcgaagag aaggagtcgt taactccaaa ccattttttg      6360
     atgcttagct ctaatggagt tcgacaatcg atcaagatgc cggtagatga aaaaagcgct      6420
     ctgaaaggca gttgggagct aattcagaac aagttggatt acttctggac tcgctggacc      6480
     gtcgagtatt tgccaataat atctcggcga tcaaaatggt tcaaggaggt tgcaccaatc      6540
     gaggtaggag cgttggtgat gatagcagac gggaaaatcc ggaaccaatg gatacgtggt      6600
     cgtgttaccc gtacatatcc cggcaaggat ggagcagtac gactagcaga cgtagagacg      6660
     cctacagggg tgttgaagag aagagcggtg tgcaagctgg cagttttgga tgtgtgcgat      6720
     cgtcaggaac ctgcaatgag caatggtgat ataggcaacg ggcatcatgg agcagatcgt      6780
     cgtggatatg gtgccgtcga accagtgttc acacgacacg agggggagga                 6830
//
ID   BEL-190_AA-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   supercont1.75;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-190_AA_;
KW   BEL-190_AA-I; BEL-190_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-395
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.75; Positions  193456  193062.
XX
SQ   Sequence 395 BP; 144 A; 66 C; 66 G; 119 T; 0 other;
     tgttgcgacg actgcatcca tcgaagcgcc cctcgaacgc atagaaacca tccatgcgaa        60
     tgagtgggga actgtcaaat caaataagaa ttgagaaaca gcttatcatt gttgattgat       120
     gtggaagcag aatcatttat taagaagtga attataatct atattattac tatatcctta       180
     ttaaaactaa atatttacag atagcgcctt gaattacaat atattaaata taaaaatttg       240
     aatttgtttg cctagtaaga gaccaaatgt aagtaatatg aaatatgcca ttcgactatc       300
     tctaactaat aaatttatag ctttgagcta atctcatcgg gaacattgac gagtttttgc       360
     tgaaaagacc tccgaaaggc caatacgtct taaca                                  395
//
ID   BEL-191_AA-I repbase;    DNA;    INV; 7188 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-191_AA_;
KW   BEL-191_AA-LTR; BEL-191_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7188
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 873-873 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5213-5791] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4700..6175
FT                 /product="BEL-191_AA-I_2p"
FT                 /translation="MVALVRRFHYNSNPRNRNAKRTGFLSTVELDQSTEQL
FT                 VKIAQEERFSQDIAEVIRDGQVKKNSRLKALLPRLVNGILRVGGRLRNAPV
FT                 TYNQRHPMILPDRHPLTEMILRFYHLNNLHAGPQLITAAVRERFWPLRIRD
FT                 QARQVVHSCLRCFRCKPEVMEQLMGELPSERVTPTLPFLRSGVDYCGPFFY
FT                 RTSRKGVPIRCYVAIFICMVTKAVHVECVADLSTSAFIAALRRFVARRGKP
FT                 QLIECDNALNFRGAKRELDELVRLFGSQQHQHLVTTSCAEDGITFKFIPPR
FT                 SPNFGGLWEAAVKSLKKHLRCTLLNTILSLDEFQTLLTQIEACLNSRPLTQ
FT                 LTADPNDLEVLTPGHFLVHRPLITMPEPSLADVPMNRLDRYQQTQEYVRRI
FT                 WRQWQSDYLSGLQPRTRWTRQRDNVNVGTMVLLKDDNLPPLKWRLGRVTQV
FT                 FRGDDNYVRVVTVRTQDGEFRRAITKICVLPIQQPGGDPIADEPEGN"
FT   CDS           join(1479..3005,3008..4363)
FT                 /product="BEL-191_AA-I_3p"
FT                 /translation="MKKECPDSLNKLIDEYERNLRMLEKVGEHPENWSTLL
FT                 VFMLSSRLDPATMRHWETHRRSTNVPTYKELIEFLRSHSLILQSVAAPKYQ
FT                 PSDPPRTTPSARNAPIKLTSANSAISPPQKSCAFCKQSPHSPFHCEVFRKM
FT                 TASERFDATKKNSLCINCLSPSHQMKNCSSGACRVCNQKHHTMLHQRPNPS
FT                 NQTSPPTQTQPSKPSSSSSSQSSFSPSAPTNHSQSSHASKPSTSSNENQAP
FT                 TISALSTHHVSSSPSKQHHRVQSTVLLSTALVKVFDPEGQSLWARALLDSG
FT                 SQLNFVSEQLVQKLKLKRSKDFLPISGVGLSSTSSKYSVVARIQSHHADFE
FT                 TSWRFHVLPKITMELPTQAVDVSSLQLPSDLVLADPSFGEPGPIDLIFGAE
FT                 NFYDLLREGHFKAGPYQPNLQNTALGWVVSGKVESAILESSVVNVAYATPT
FT                 IEEQLARFWEIESCQNSSTLSLEETACEQHFSKTTIRDQPDGLSLHCQKES
FT                 QHSPNLVVQRSSPRRFLSLERRLNADPQLKQAYTAFVNEYAELGHMKLVDN
FT                 PETHSPTYFLPHHCVVRPDSITTKLRVVFDASCATDTGVSLNDALMIGPQV
FT                 QDDLVAIILRFRLPQFAIISDIEKMYRQIGMDPVDQRLQLILWRDSPSEPI
FT                 RTYQLTTVTYGTSSAPYLATKCLQTLANIGLEGHPAAAAVVGKDFYMDDLL
FT                 TGADSVEEGQELVLQLLQLMNSAGLQLRKWASNSPQILQVVPEHLRDERTL
FT                 LDLEATSPVKTLGLQWNTRTDEFCFEVPKHSDVHPVTKRIVLSDIARLFDP
FT                 LGLVGPVVVQAKLFMQELWREGKAWDDELSNSAQQRWVEFRENLRDIASLS
FT                 VPRWVFATPSIAAVEIHGFCDASTLAYGACIYVRTVASNGDISANLLTAKS
FT                 KVAPLGNSKRNPTISLPRLELSGAPKPPLRKGRIQYKYPSQEFLLDGLDYS
FT                 LSLAIF"
XX
SQ   Sequence 7188 BP; 1855 A; 1876 C; 1749 G; 1704 T; 4 other;
     taaaaatctg gtccttcgag ccggatcaag gagagtcggg aacagtgttt gcgattcgcg        60
     ttcggttcgg agtgattttc gtgaaaaaag tgcaagtgaa cattagtgaa agtgactgga       120
     accctttagt gtcacgaaag atagtgacga agaaagcgtg atcacgatca cgaataaaag       180
     tggatccaga aaagaaacga caactgtgac tgcgagctgt gattcgttgc gaacgtgcaa       240
     ttcagcgata attagcacag aaagtgatag tgaaaccacc tcggacccac gctggaccac       300
     gttggattct ggcgtcatcg agaagcatcg gtctattgtg ctattcatcg ctctccccca       360
     ttgtcgtcgg tggcgtggct tgggtgtcga aacgtggtgt ggcttcggtt ctttctctac       420
     cccaacggag actgtaagta cacttgcatg cgcatatgac ccgagtggca agatatacca       480
     gaagtaagac cagtgtgctg gcttactaaa tttttcgcaa ttttgcatga ctcgagtggt       540
     ttcggatgtg agcaattttt gggattttgg gtagtgattg gcactgtgga aggtacgtgt       600
     ggaaaacgtg gttcatcgaa tgttctagtg cagttgggcg ggaaagatgg ctactgaact       660
     caaaaggctt atcaagcagg agcgattttg cgtagattct ctcatcaatc tagagaagaa       720
     cgtacgaaaa tttgatgatt cagcgggcgg gggcccggcc ggcggcgcgc gccgcgccgg       780
     gggcggggcg cccccggcgg gccgggggcc gccccgggcg gccgccgccc cgcgcgcggc       840
     ggcggcccgc gggggccgcc gcgggcggcc gcccggggcg cgccgggggg gatcaggata       900
     tgcttgaagg ttggcaagaa tatttggagg aaatttacgg cgaatttaaa cgggtcaggt       960
     tagagttgga gttgtcggat gaatttcgca atgcactaga gcagtctatg aaggtggagg      1020
     aaggttcgtc tgataatttg gacctgacaa ttaaggccac acgtgctgaa gtcgagctca      1080
     cgtatttgaa gatcaagggg tttataaaat ctaaattaca aaaaccaagt acatcaaccg      1140
     ttmwtgctgc ccaaccagtt ccattaccag tgaatactat tcagtctcga gtgaaacttc      1200
     cggaaattaa acttccgcat ttcgatggat ccattcggga ctggccaacg ttccgagaca      1260
     catttcgttc gcttattgat tccactccac agctcagcaa tgtggacaaa ttttcgtact      1320
     tagtctcgtc cctttcgaaa gaagccaaac gtgtgatcga agttattgag gttacttcgg      1380
     caaattattc ggtagcgtgg gaattacttg aaaagaggta cgagaacaaa tacctcattg      1440
     ttaaagcgta tatcgaagcg ctttttaggg tcgagtcgat gaagaaggag tgtcctgact      1500
     cactcaataa gctcatcgac gaatacgagc gtaaccttcg aatgctcgag aaggttggtg      1560
     agcacccaga gaactggagc actcttcttg tattcatgct cagttctaga ctcgatccag      1620
     ctaccatgcg ccattgggaa acccaccgta ggtcaaccaa tgttcctacg tacaaggagt      1680
     tgatagaatt cttgcgaagt cacagcctca tcctgcagtc agtggcagcc cccaaatatc      1740
     aaccatctga tcctccccgg acaactccct ctgctcgtaa cgcccccatc aaactaacct      1800
     cggctaattc tgccatatcg ccaccgcaga aatcgtgcgc tttctgtaag caatcccctc      1860
     attcaccctt ccattgcgaa gtctttcgga agatgaccgc tagcgagcgg ttcgacgcca      1920
     caaagaagaa ttcgttatgc atcaactgcc tctcaccttc tcatcaaatg aagaactgtt      1980
     cgagtggagc ctgtcgagtg tgcaaccaaa aacatcatac gatgctgcat caaagaccca      2040
     acccgtctaa tcaaactagc cctcctaccc aaacccaacc atcgaaaccg tcgtcgtcgt      2100
     ctagttcgca gtcatccttt tcgccgtccg ctccaacaaa ccactcgcag tcctctcatg      2160
     cgagcaagcc ctcaacatcg tccaatgaga accaagcgcc cacaatatct gccctttcga      2220
     ctcaccacgt ctcatcgtcg ccatcaaagc agcatcatcg agttcaatcg acagtgctgc      2280
     tctctacagc cctggttaag gtattcgatc ctgagggaca gtctctgtgg gctagagctc      2340
     tactggattc ggggtctcag ctgaacttcg tatcggagca acttgtccag aaactgaagc      2400
     tgaaacgatc caaggatttc cttccgatca gcggtgtcgg actatcatca acctcttcca      2460
     aatattccgt cgtcgctcgt atccagtctc accacgcaga tttcgaaacc agttggagat      2520
     tccatgttct tcccaagatt actatggaac taccaacgca agcggtggac gtttccagcc      2580
     ttcaattacc ctccgacctg gtcctagctg atccttcgtt tggcgaaccg ggtccaatcg      2640
     acttaatatt tggcgctgag aacttctacg acttgttgcg cgaaggccat ttcaaggccg      2700
     gtccctatca gcccaaccta caaaatacgg ctttaggatg ggtggtgtca gggaaggtcg      2760
     agtcagcaat cctagagtcg tcagtcgtta acgtcgcata tgctactcca accatcgaag      2820
     aacaactggc tcgattttgg gagattgagt cttgtcagaa tagcagcacg ttgtcactgg      2880
     aagaaacagc ctgtgagcag catttttcaa aaacgaccat ccgagatcaa ccggacggtt      2940
     tgtcgttaca ctgccaaaaa gagagtcagc attcgccaaa cttggtagtt caaaggtcgt      3000
     cgccamtcgt cggttccttt ccctggaacg ccgcctcaac gccgatcctc agttgaagca      3060
     ggcatacaca gcattcgtca acgagtatgc ggagctcggg cacatgaagc tagtggacaa      3120
     tcctgaaaca cactcaccca cctacttcct tccacatcat tgtgtagttc gaccagacag      3180
     catcaccact aaattgcgag tggtcttcga cgcatcttgc gcaaccgaca caggagtgtc      3240
     attgaatgat gctctcatga tcggtccaca agtgcaggat gatcttgtcg caatcatttt      3300
     gcgattccgt cttcctcagt ttgccatcat ctctgacatc gagaagatgt ataggcaaat      3360
     cgggatggat ccagtcgatc aaaggcttca acttattctt tggagagatt cgccgtcaga      3420
     accaatcaga acgtaccaac tcacaaccgt gacgtatggt acatcttctg ctccgtacct      3480
     cgctacgaaa tgcctccaaa ctctcgcgaa cattggattg gaaggccatc ctgcagctgc      3540
     cgctgttgtg ggcaaggatt tttatatgga cgacttgctc accggtgccg acagtgtcga      3600
     agaaggtcag gaacttgttc tacagctact ccagctgatg aattctgctg gattacaact      3660
     gcggaagtgg gcctccaata gcccacaaat ccttcaagtc gttcctgaac acttaaggga      3720
     tgaacgtact cttctcgatc tcgaagctac ctctccggtc aaaactctcg gtctacaatg      3780
     gaatactcgc actgacgaat tctgtttcga ggtaccgaaa cacagcgacg ttcatcctgt      3840
     cacaaagcga attgtccttt cggatatcgc acggctgttc gaccccctgg gactagtcgg      3900
     cccagtggtg gtacaggcta agctgttcat gcaagaattg tggagagaag ggaaagcgtg      3960
     ggacgatgaa ctcagtaact ctgctcaaca acgctgggta gagttccgtg aaaatcttcg      4020
     agacatcgca agcttaagcg taccgcgttg ggtcttcgct acaccaagta ttgcggcggt      4080
     tgaaattcat ggattttgcg atgcgtcaac tcttgcctat ggtgcctgca tctacgtcag      4140
     gacagttgcg tccaatggcg acatctctgc taatcttctc accgcaaaat ccaaggtggc      4200
     tcctcttgga aattcgaaaa gaaacccaac gatcagtctg ccgcgcctag agctatccgg      4260
     cgcgcctaag ccacctcttc gaaaaggtcg aatccagtac aaatatccaa gccaggagtt      4320
     tcttttggac ggactcgact atagtctatc attggctatc ttctaatcct tctcgttgga      4380
     aaacgtttgt ggccaaccgg gtctccgaga tccagcgaat cactgctaaa ggaatctggg      4440
     cacatgtgcc agggctggaa aatcctgcgg acgtcatctc cagaggaatg cctccaagcg      4500
     aactgaagga attcactcct tggtggaatg gtccgactgg cttcgacaac cttcccgctt      4560
     ttggccgtcg ttgtctgctc ccgtccaaga cgagtatccg ccggatcagc ttgaagaacg      4620
     catcgtagcg ctacctgttc aagtgtgccc gccaaacgag ctgttttcgt tattttcgtc      4680
     gttcacgaaa ttagtacgaa tggtagctct agttcgaaga ttccactaca actccaaccc      4740
     gcggaatcgg aatgcgaaac gcacgggttt cttgtcgact gtcgaactag atcaaagtac      4800
     cgaacaattg gtgaagatcg cccaggagga acggttttca caggatatcg cggaagtgat      4860
     tcgcgatggg caagtcaaaa agaactcccg actgaaggca cttcttcctc gattggtgaa      4920
     cggcatattg cgtgtcggtg gccggctgag gaacgctcca gttacgtaca accaacgcca      4980
     tccaatgata cttccggata gacatccgct gacagaaatg attctgaggt tctaccacct      5040
     caacaacctc cacgctggac cacagttaat aacagccgca gttcgggagc gattctggcc      5100
     acttcgtatc cgcgaccaag cacgacaagt ggtgcattcg tgcctaagat gtttccgctg      5160
     caaacctgaa gttatggaac agctaatggg agaattgcca tcagaaaggg ttactcctac      5220
     gctaccattt ctccgctccg gagttgacta ctgtgggccc tttttctacc gtaccagcag      5280
     aaaaggagtt ccgataaggt gctacgtcgc catcttcata tgtatggtga cgaaggcagt      5340
     ccacgtcgaa tgtgtagccg atttgtctac tagtgcgttt attgccgccc ttcggcggtt      5400
     cgttgcccgg cggggtaagc cacaactaat tgagtgcgat aatgcactga acttcagagg      5460
     agctaagcgc gagctggatg aactcgtccg tcttttcgga tctcaacaac atcaacatct      5520
     agtaaccacc agctgcgctg aagacggtat cacgttcaag tttataccac cgagatctcc      5580
     gaatttcggc ggcctctggg aggctgccgt caagtctctc aagaagcatc tccgctgcac      5640
     tcttttgaac actatcctat ctttggatga attccaaacc ctcctcactc aaattgaagc      5700
     ctgtctcaat tctcgtccgc tgacccagct aactgcagat cccaatgacc tggaggtgct      5760
     cacaccaggg cactttttgg tccatcggcc actcatcacg atgcctgagc caagcctggc      5820
     tgatgttccg atgaacaggc tcgacaggta tcagcagacc caagagtacg tccgtcggat      5880
     ttggaggcag tggcagtccg attacctatc tggtttgcaa ccgcgaacac gttggactcg      5940
     ccagcgcgac aacgtcaatg tgggtacgat ggtcttgctg aaggacgaca accttccacc      6000
     cctcaagtgg agactaggac gagtgacgca ggtgttcaga ggagacgaca actacgtgcg      6060
     agtcgtgacg gtccggacac aagacggcga attccggcgt gcgatcacga agatttgcgt      6120
     cttacccatt cagcaacccg gcggtgaccc aatcgctgac gaacctgaag ggaattagta      6180
     tacctccaac aatcgcagtg tttaccactg cgcaacgccg gggggtcgaa agacctccca      6240
     tccatgtaag tctatgtttt atattgattt tcaaaaagct aatggaatgt ttcatccccc      6300
     ataacttccc gacgacgacg tccgctgctg ctgccgcgag ttcttgatcc tacgctaacc      6360
     aatgatctaa tgttgtaccc aaacgcatcc actatttgtc ggagagacta gtggttctgc      6420
     aacaggggaa gctatgatca aaggaagcaa gatcaactcg kgcttggatt ccgctctgaa      6480
     ctgaaggatg tcacgtcatc tacacccgca atcgtctcgc cctcggagga aagtcatcca      6540
     acaacgcaca agtacgctca gtagcttgat gccaacgatc atcgtccgtt tgcggacccg      6600
     cggaggccgg tagcctccaa cccagttaag tgttgttttt attctcaaat attgttggaa      6660
     aagccgccta tgttttgttc cagagaatga ccagccatcg agggtgtcga cgaggaccac      6720
     ccacccgacg aagagcacgt gcgacgaagt gatgactcct acaccgccat acatcgataa      6780
     gccaagcacg gtcgaggtca ctaagtgttt ccgacaacgc acatggctat cgacgaagat      6840
     ttcaggagta ttattattat tatagcttta ttaaggagat tttcagccct aggcatccca      6900
     cgagtagaag taaacaaccc gatgcagatt cccgacagca gacgaagtgc ggcgcagcaa      6960
     gaccactgga cactacaagc tacaagatca tcgaatgcag acagtgacga catgcgagca      7020
     gcaacagaaa ccagactatc taaagttaat tccgaaccat gaattgaaaa atgaaattaa      7080
     cgtagattaa gagtagaata ggtacagtta ggctaacgaa cattgaattc caattgataa      7140
     gctaggggaa gagtagttaa aaacgcgcct ttttaacggt ggccggta                   7188
//
ID   BEL-191_AA-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-191_AA_;
KW   BEL-191_AA-I; BEL-191_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-362
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 874-874 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 362 BP; 105 A; 89 C; 70 G; 98 T; 0 other;
     tgttcacgca taacgtgaat tttgagccag tctaactgct cgaaaaccaa ttatagagtc        60
     agcctgttct ttcccataga tcagcagcag tccgtcgcag catccgatga tgctgccgat       120
     agtgatctgc aagataggta gatttttgcg aattatttgt ccactcatct tcccgcttta       180
     cgagataaag ccgaaggatg gaccagaaaa tccctcagtt atcacccaaa cgcggaataa       240
     actacttcac atcacgccga atatcgttgt cttataatcg acggagtaat aaaagttgtg       300
     tcgttctaac tccaatcaag aacactgatt ccctagttcg aagttccctg atcgcggtaa       360
     ca                                                                      362
//
ID   BEL-192_AA-I repbase;    DNA;    INV; 6058 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   27-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-192_AA_;
KW   BEL-192_AA-LTR; BEL-192_AA-I.
XX
NM   BEL-192_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6058
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 875-875 (2011).
XX
RN   [3]
RP   1-6058
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
DR   [2] (Consensus)
XX
CC   Positions [4999-5559] - Integrase core
CC   'ACAT' target site duplication
CC   LTRs are 97% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(611..1414,1389..5144,5148..5363,5367..5999)
FT                 /product="BEL-192_AA-I_1p"
FT                 /translation="MLKIKQKQIERQRRELEELQQLSKLVEEESECNEEPD
FT                 NQVGSDISYIDKVQGWMNSCNGVNPGRSRRPDTASEANASQFSLMFSEVSE
FT                 NEIIRRHQVQQRTSSMVVDPTTHQIASRQVFPKNLPAFAGYPQDWPLFISA
FT                 FEQANASCGFTHAENLVRLQQALQGKALEMVRNLLLLPENVPMIIDKLRRR
FT                 FGNPEILSTMLAQRIQKLEGPDSENLESLMEFGSAIGEFTQHLEVSKLNDH
FT                 LKNPDRKISRLNVSCSDLIQTANRIFMYKQRTGYLCDGRGYFWGKLFPLLK
FT                 NPVLMQSLIQKLPPCYAMQWVEYKRNCQVIDLKTFGKFMEDLVDKALEVTF
FT                 EMIEVGSSKRREKPKAKVFTHLMKEDHEVNDSKANLYNKPSSGQVQRKDVS
FT                 CSICEELGHLGRDCREFRNASLERRWMIIKHMGLCPLCIFNHGKWPCRSRN
FT                 RCEVEGCNGLHHSLLHNPSNADAVNREARCNSHCLPNKTVLFRIIPVSLYR
FT                 EHRRWNTLALVDEGSSTSLIDNEVAEFLQLDGPREPFEMRWTNGVSRTESH
FT                 SRNVEMKISGIDKIQEICVARTVNKLDLPAQQLDASKLIEEFRHLEGVEIS
FT                 SYXLDTPKLLIGIDNMHLIAPVASQIGNKGQPIAVKCKLGWTIYGPRPNXL
FT                 SNVHFLGHHRCGCEECSEADQDLNQMLRDSFQLXAVGVSPVRLESRDDCKA
FT                 REILERTIKRVGDRFEIGLLWKDGVPRFPKSYSMAYNRXKNLEARLKRNPS
FT                 XRDILQRQIDEYVSKGYAHXITERELLETPQEHCWYLPLNYVVNPKKPEKV
FT                 RMVWDAAARTNGVSFNDSLLKGPDLVASLSGVINGFRERKVAFGGDIREMF
FT                 HQILVRQEDKQAQRFLFRSDTNSEPDIYVMDVVIFGASCSPCLAQFVKNFN
FT                 ALEHQXKYPIASDAIIRKHYVDDYFDSVDTEAEAILRAKDVRKIHADAGFE
FT                 IRNWVSNSSKVLEELGEAEVQSTKSFDEADAERVLGIXWQPEKDSFVFSTE
FT                 FREDLRPYIQEGAWPTKRIALRCIMSMFDPKQXLAPVLIHGRILMQDLWRS
FT                 GIGWDEKIGKAHHDRWLRWTALFPLIDNISIPRCYLGRMSPNAYDTVQLHV
FT                 FADAGEDAYGCVAYFRFTDGENFHCXLVEAKAKVAPLQHLSIPRKELEAAV
FT                 LGARLLLAISENHSIEVKKRFLWTDSNAVVSWVKSDIRRYKPFVAHRVEEI
FT                 LSKTSPEDWRWVPSKHNPADDVTKLGEATQLSSNNRWFRGPEFLYQTEDNW
FT                 PVQKWNSLEIEEELRANVLFHDIVLPNVMLPRVEHISKWKVLVRMVATIYR
FT                 FVSNCRRRIDKQPIEALPITKKGLARIPAKQVPLRQEEYLLAENLIWRVTQ
FT                 GEAFADEVKTLIKNQDSSVNQFGAVEKSSPLYRLSPFLDQSGVVRMEGRTT
FT                 AANYATFDVRFPVILPKEHIISRKLVEFYHQQCAHGSREMVVNEILQRFYI
FT                 PGLRSLVESVTRDCIWCKVRKAKPVVPRMAPLPPSRMAVREHPFSYVGVDY
FT                 FGPVVAVGRRREKRWVALFTCMTIRAVHLEVVYSLTTQSCKMTIRRFVKRR
FT                 GSPIEIFSDNGTNFVGASKDLAEQIAINSECADTFTGARTKWTFNPPSAPH
FT                 MGGVWERMVRSVKEAMQVLACGERLTDEILQTTLVEAENLINSRPLTYVST
FT                 NVQEDKEAITPNHFLTSCPLVDCMPSRSSTELADRLRNSYSQAQYLADELW
FT                 ERWQREYLPMMNRRTKWHKESKPLAVGDLVYVADSEKRRTWERGVIEEVFA
FT                 GDDGRIRSAIVRTKTGVKKRAVAKLAVLEIGA"
XX
SQ   Sequence 6058 BP; 1815 A; 1168 C; 1596 G; 1463 T; 16 other;
     aagctcaaaa gaatttaccg atggatgtaa tctacccgtg ctgcgaggaa gacgaccagt        60
     atgacgcgat ggtgcagtgc ggtcggtgtc aaaagtggca ccacttctct tgtgtcgggg       120
     tggaccagag catagcggag ctagtgtggt actgccatac ggcctcggag aggacgtttc       180
     agcacgtgag tcgttaggac agccaggcgt cactcgtata caaccttcta gggcagctaa       240
     gaagagtaaa gatcataccg gtaagataag cgataagacc agtcagaaat tagtcggaac       300
     gaaagggcag aaagaagtag ctgaacggcc gacgagccag caagaaggaa ataaaggcca       360
     agaaacatgt caggcaggga catcagcggc aggacaaaca agtattgcta agtcagtcaa       420
     gccgtcgcgt agtcgcgttt cgattatcag tgaaaattct cgtactgata gtaacaaaag       480
     tggtaaaagt tcaaaaataa gtggcaccag taagtcgagc agttccaaac gtgatttggc       540
     gttgaaacgg atcgaagaat tgaaggaaag gagtcgtttg gaggcgctgg aagaagaaac       600
     tcagttacag atgttgaaaa taaagcagaa gcagattgaa cggcagcggc gcgaattgga       660
     agagctacag caactctcta aattggtcga ggaagagtcg gagtgcaacg aagaacccga       720
     caatcaagtt ggaagtgaca taagttacat tgataaggta cagggatgga tgaactcttg       780
     taatggtgtg aatcctggta ggtcgcgcag gccggacacc gcgtcagagg ctaatgctag       840
     tcagttctca cttatgttct ccgaggttag tgagaacgaa atcattcgaa gacaccaggt       900
     acagcaaaga acatccagca tggtagtaga tccaacgaca catcaaattg cttcgcgtca       960
     ggtgttccca aagaatcttc ctgctttcgc aggttatcca caggattggc cactttttat      1020
     cagcgcattc gaacaagcaa atgcttcttg tggattcacc catgcagaaa acctcgtcag      1080
     acttcaacaa gcgttacaag gaaaggcgtt ggagatggtt cgtaatctgt tgctattacc      1140
     agagaacgtg ccaatgatta tcgacaagct acgtcgtcgc ttcggaaatc ctgaaattct      1200
     gtcaactatg ctagctcagc ggatccagaa actcgaagga ccagattcgg aaaatttgga      1260
     gtccttgatg gagtttggga gtgcaatcgg agaattcacg cagcatctgg aggtttcgaa      1320
     actgaacgac cacttgaaga atcccgacag gaagataagc aggctcaacg tttcttgttc      1380
     cgatctgata caaacagcga accggatatt tatgtgatgg acgtggttat ttttggggca      1440
     agctgttccc cttgttgaag aatcccgtat tgatgcaaag tctcatacag aaactaccac      1500
     catgctatgc catgcaatgg gtggagtaca aacgcaactg ccaagtgatt gacttgaaaa      1560
     cttttggaaa atttatggag gatctggttg acaaggcgtt ggaagtaacg tttgaaatga      1620
     tcgaagtagg gtcgtcaaaa agacgtgaaa aaccgaaggc caaggttttt actcatctga      1680
     tgaaagaaga tcatgaagta aacgatagta aagctaatct gtacaataag ccatcgtcag      1740
     gacaggttca aagaaaggac gtcagttgct ctatctgtga ggaactgggt catttgggtc      1800
     gggattgccg agaattccgt aatgctagtt tggaacgaag gtggatgatt ataaagcata      1860
     tgggtttgtg ccccctgtgc atattcaacc atggaaaatg gccttgtagg tcgaggaatc      1920
     gttgcgaggt cgaaggttgt aatggcttac atcattcgtt actacacaac ccgagtaatg      1980
     cagatgctgt caatagagaa gcccgttgca acagtcactg tttaccaaat aagacggtgt      2040
     tgttccgcat aattcccgtt tcgttgtatc gagaacatcg aagatggaat acactagcgt      2100
     tggtagatga aggatcgtct acatcgctta tcgataatga ggtagctgag tttctacagt      2160
     tggacggacc ccgcgaacca tttgaaatgc gctggacgaa cggagttagt cggactgaat      2220
     ctcattcaag aaacgttgag atgaagattt cgggaatcga caaaattcaa gaaatatgtg      2280
     tagcaaggac agttaataag ctagatcttc cagctcaaca attggatgca agcaagctga      2340
     tcgaagaatt ccgacactta gaaggagttg aaatatcaag ttackcgttg gatactccga      2400
     agctgttgat cggaatcgat aatatgcacc tcatcgctcc mgttgcatcg caaataggaa      2460
     acaaaggaca gccgatcgct gttaaatgca aattagggtg gacaatttac ggtccacgac      2520
     cmaacwtgct gtcgaatgta catttccttg gtcatcatcg atgtggttgc gaggagtgca      2580
     gtgaagcgga tcaagatttg aaccagatgt tgcgggacag ttttcaactc gawgccgtag      2640
     gggtttctcc agtaagatta gaatcaagag acgattgtaa agcgcgtgag atcctcgaaa      2700
     gaacaataaa acgagtaggt gatcgattcg agatcggcct tctttggaaa gacggagtac      2760
     ccagatttcc aaaaagttac tccatggcgt ataatcgatk gaagaatcta gaagctcgat      2820
     tgaaacggaa tccgagtatk cgggacatac tgcaaaggca aattgacgag tacgtgtcca      2880
     agggttacgc tcacamaatc acggaacgtg agctgttaga aacaccgcag gaacattgtt      2940
     ggtatttacc tttgaactat gtcgtcaacc cgaagaaacc cgaaaaagta agaatggtgt      3000
     gggatgctgc agcaaggact aatggagtct cgtttaacga tagtcttcta aagggaccag      3060
     accttgtcgc ttcgttgtcc ggtgttatca atgggtttcg tgagcgaaag gtggcatttg      3120
     gcggtgatat ccgagagatg tttcaccaga tcctggtgcg acaggaagat aagcaggctc      3180
     aacgtttctt gttccgatct gatacaaaca gcgaaccgga tatttatgtg atggacgtgg      3240
     ttatttttgg ggcaagctgt tccccttgtt tggcgcaatt tgtgaaaaac ttcaatgcct      3300
     tggaacatca acmgaagtat ccaatagcwt ccgatgccat tatccggaaa cattacgttg      3360
     acgactattt cgatagtgtc gacacggaag ccgaagctat tttgcgtgca aaagatgtcc      3420
     ggaaaataca tgcagacgct gggttcgaaa ttcgmaactg ggtgagcaac tcatcgaagg      3480
     tactagaaga gctcggtgaa gcggaggtac aatcgacgaa gtcttttgat gaagcagatg      3540
     cagaaagagt ccttggaatt akgtggcaac cggagaaaga ttcgttcgta ttctccaccg      3600
     aattcaggga ggatttgcga ccatacattc aggaaggagc ttggcctacg aaacgaatag      3660
     ctttacgctg tattatgagc atgtttgacc cgaagcagtt wcttgcgccg gtgttgatcc      3720
     acggacgtat tttaatgcaa gacttgtggc gaagcggtat cggktgggac gagaaaattg      3780
     ggaaggcaca tcacgaccgt tggctacgat ggacagcatt gtttccattg atagataata      3840
     taagtattcc acgctgctat cttgggagga tgagccctaa tgcttacgac acagtacagc      3900
     tacatgtttt tgcggacgct ggagaggacg cttacggttg cgtagcatac ttccggttta      3960
     cagatggaga aaattttcat tgtgmsttgg tagaggcaaa ggcaaaggtg gctcccttac      4020
     aacacctgtc tataccgaga aaggagttag aagcagctgt actaggagca agattgcttt      4080
     tagcgataag tgaaaatcat tcaattgagg tgaagaagcg ttttctttgg actgattcga      4140
     atgcagttgt ttcatgggtg aaatcagaca taaggcgtta taaaccattc gtggctcatc      4200
     gtgtcgaaga gatacttagt aaaacaagtc cggaagattg gcgttgggta ccctcgaaac      4260
     acaatcctgc agatgatgtt accaaattgg gagaagcgac acaactaagt tccaacaatc      4320
     gatggtttcg tggtcctgaa tttctgtatc aaacagaaga caactggcca gtacagaagt      4380
     ggaattcatt agaaattgag gaagaattac gagctaatgt gctatttcat gacatagttt      4440
     tgccaaatgt gatgttacca agggtggaac acatttccaa gtggaaagta cttgttcgga      4500
     tggtggccac aatatatcgt ttcgtttcga attgtcgacg tagaatcgat aaacaaccga      4560
     ttgaagcctt gcctataaca aaaaaggggc ttgcgaggat tccagcaaag caagttcctt      4620
     tacgtcagga ggaatatctg ttagcagaaa atttaatttg gcgtgtaacg cagggcgaag      4680
     ccttcgcaga cgaggtgaag acgttgatca agaatcaaga ttcatctgtt aaccaatttg      4740
     gagcagttga gaagagcagt ccattgtacc ggttatcgcc gttcttggac caatctggag      4800
     tagtgcgaat ggaaggtaga acaacagcag ctaactacgc aacctttgat gtgcggtttc      4860
     cagtaatttt accgaaagaa catatcattt cccggaaatt ggtggagttt taccaccaac      4920
     aatgtgccca cggtagccga gaaatggtgg taaatgaaat ccttcagcga ttctacattc      4980
     caggactgag atctttagtc gaaagtgtta cgagagactg catatggtgc aaggttcgga      5040
     aggcgaaacc agttgttcct agaatggctc cacttccgcc atcccggatg gctgtgagag      5100
     aacatccatt ttcttacgtt ggtgtagatt atttcgggcc ggtgtaggta gctgttgggc      5160
     gcagacgtga gaaacgctgg gtggcattat ttacgtgtat gacaatacgt gccgtacacc      5220
     tagaagtagt ctacagcctg accacacagt catgtaaaat gacaattcgc agattcgtga      5280
     aacgacgtgg aagcccgatt gagatctttt cagacaacgg gacaaatttt gttggagcga      5340
     gcaaagattt agcagaacaa atttgagcta tcaactcaga atgcgctgat acgttcactg      5400
     gagcaagaac aaaatggacg ttcaacccac cttcggcccc ccatatggga ggtgtttggg      5460
     agcgcatggt acggtccgtg aaagaggcga tgcaagtact ggcgtgtgga gaaagattga      5520
     cagacgaaat tctgcagaca actcttgtag aagcagagaa cctaattaac tctcgtccgt      5580
     taacgtatgt gtctacgaac gtacaggaag acaaggaagc cattacaccg aatcatttct      5640
     tgacaagttg tcctttggtg gattgcatgc cttcgagaag ttcaacagaa cttgcagatc      5700
     gactacggaa cagttatagc caagcacagt atttggcaga cgaattgtgg gaacgttggc      5760
     aacgggagta tctacctatg atgaaccgga gaacgaagtg gcataaggaa agcaaacctt      5820
     tggctgttgg agatttggta tatgttgcag attcggagaa gcgaaggacc tgggagcgtg      5880
     gagtaattga agaagttttt gctggagacg atggaagaat acggtcggcg atagtgcgta      5940
     ctaaaacagg agtgaagaag cgagcagtag caaaattagc agttctggag atcggagcct      6000
     aggagtggta agcacagtag tgactaccat caactacagg gcttacgggc cggggaga        6058
//
ID   BEL-192_AA-LTR repbase;    DNA;    INV; 585 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   27-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-192_AA_;
KW   BEL-192_AA-LTR; BEL-192_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-585
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 876-876 (2011).
XX
RN   [3]
RP   1-585
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updted.
XX
SQ   Sequence 585 BP; 201 A; 75 C; 129 G; 180 T; 0 other;
     tgttacgccg ggatagaaag ggttcacttt gtggacgcga ccatgaaaac gttggtttag        60
     ctgagagcgt gacggagatt ataaacatat ggaatgactg tcaaaccgta gggcgctgac       120
     atattagttg aaagagttga aactgaagtg taagaacatt gaatttatcg aagatatatt       180
     ggaaacacta gagaaatagg attgttactg gaattaattg ttgaattgaa atagtaagta       240
     gaaaattttt attaattaaa cctagctaaa tttttattaa agccgttgaa ctattgatgc       300
     tgaagttgga acaaaggatt ctatgaaata gcgcacaagt tgttacatac cgtgagttaa       360
     tgctaatgct tgaactgatt attcagtgtc aattcagggt atacattgta gggagattgg       420
     aacgttcaaa ggctgaattt ataattcgaa gactaaattc gtgtagtaag acaaacttgt       480
     aacatatgcg aaatttattg aatatatttt tagctttgag tgtgtcgaaa agcagtagtt       540
     caagagatag ttttatcgat atgctgcccc aaactccttc caaca                       585
//
ID   BEL-193_AA-I repbase;    DNA;    INV; 7241 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-193_AA_;
KW   BEL-193_AA-LTR; BEL-193_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7241
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 877-877 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5163-5747] - Integrase core
CC   'GCATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           720..6116
FT                 /product="BEL-193_AA-I_1p"
FT                 /translation="MPAADLRALVKQERHAWVTLDNIQEFLRTYDDQRDKN
FT                 ELQFRMQRLDEVYNKYCEVRVKIEVITDDLDTVEVEGAVGAEGVDDAPVDQ
FT                 AAMAEARQRENEEIFKEFENKYFRLKQQLHTKMIGNQGVIVERQAGAEVCQ
FT                 PSRMKYPELRLPTFTGKHSDWINFRDNFRSLIHANNQLNMIDKFNYLRSSL
FT                 KDEALLQINQIQVTAANYTLAWETLEAKYENHELIAQEHLRALFAVAPMKT
FT                 ESFQGLNHLLTTFRVNLQQLEKLGERPNDWSTLLAFMLSQRLDDDTIRHWE
FT                 THHSSKDIPTYQRMVEFLENHCSILQSTSARKSSDFKRPVKPPVVHAAVSP
FT                 SGNCQICNGGAHSIEQCRRFGKMKVIDRKATVRRLGLCLNCLRPGHYVVDC
FT                 SRSSCGKCGQNHHHLLHPFVASVQQEQTSSQPSSQGPPKRPQSANPPPQHP
FT                 NQAQNRNTSHNTPQSTQTQSTSSQNAPPTNTPTVHATATPFETLRQSNIAL
FT                 LSTAIVKLGDRYGNTVLARASLDNGSQICVMSESLSQRLNFQRLRENLPVD
FT                 GVGGCSSVSKQAVLASVSSRSSSYVSCELKFYVLPKVTSNLPQQNIDVSSW
FT                 NMPERITLADPSFNESGAVDVILGNIIFYDLLLNAQRRISDSGLILRNTRL
FT                 GWIVAGGLPETSVVSYSAVASSPVTTEELYEELAKFWELESCRTKSCLSIE
FT                 ESTCEAIFQKTTTRDSDGKFRVTLPKKKNMLEKLGESKAIAKKRFLAMERR
FT                 LNGNPEMKALYTAFMHEYLSMGHMEEVASDDEEPGPEYYVPHHAVIKPDST
FT                 TTKLRVVFDASCSTDTGVSLNDVLMVGPVVQDDLRSILLRFRLFKYAVVGD
FT                 AEKMYRMVWQHKSDQQLHKIFWRDSIDEPLRAYKLTTVTYGTASAPYLATR
FT                 CLNKCAEDGAERYPSGSVVVKKSFYVDDMLAGADTVEESQQLCKEVLELLK
FT                 GSGFNLRKWNSNNPEVLKEIPLHLRDDRVKLDLDEKATVKTLGLTWEPATD
FT                 TLWMKVPDWRPGGPITHRIVLSEIARLFDPYGLVGPVIVLGKLFLQDLWRG
FT                 KYSWDEPLSGELQPKWLEFRTNLRELDAISVPRWINFGKDVVSCEFHGFSD
FT                 ASDKAYGAAIYLRCVNQDGQVTINLLMAKSRIAPLEDLSKRKKKQNIPRLE
FT                 LSAALLLAHLFESVSSSMMIAAKSFFWTDSTIVKCWISSHPSRWQPFVANR
FT                 VSEIQHATTEGIWNHVPGIENPADIISRGAAPAEIANNSLWWNGPEWLRKE
FT                 THYWPKNAQVHEQQFDSVTLEERPLVSAVLQILPPSEIFKLRSSLSNLVRP
FT                 TAWLRRFSFNCKPQNRQQRRSGIITVAEHEEALLVLVKLAQSECFPLELSD
FT                 LAATSAVRPASKLRTLNPKMIDGVLCVGGRLGNAPVSRGRRHPIVLENRHP
FT                 LTKLIMIDYHHRLLHGGPQLMISCVRERFWPLNVRNLARQVTHECVKCFRA
FT                 KPRAHEQLMGDLPFERVSPAPAFQRVGIDYCGPFELQHARRKGAPLKCYIC
FT                 LFVCMVSKAVHIEVVTDLTADAFLAALRRFVARRGRPEQIFCDNATNFVGA
FT                 RRQLSELNRMFRQQQFQERLSTEAARNSITFNFIPAKSPNFGGLWEAAVKS
FT                 LKGHMRKVIGTRRLSQDEMQTVVIQIEACLNSRPLTPLSNDPADLQVLTPG
FT                 HFLIQRPLTAIPEPNLPDLSEGRLSRWQKVQRYSQMIWKHWSTDYLSNLQQ
FT                 RNKWTRQRNNLNVGTMVLLKEDNIPPLKWKLGRVMEIYPGQDGNVRVVAVR
FT                 TQDGRFQRAISKICILPIRDNQTEEDQD"
XX
SQ   Sequence 7241 BP; 1906 A; 1714 C; 1866 G; 1753 T; 2 other;
     tttggtcctg acgacccgga tttacgccaa acccgttaat agcctttcgc gtcgcttggg        60
     ttcgataccg gtcatcgaac tgccggacaa tagacaagtg cattgtgttt attcgctttg       120
     tggtgccggt gtggggacgt cgcttgaaaa gtgaatgtga ttgcccgggc agtgtggtga       180
     taatagaaga aaattcaaaa cgtcgccttt gctgaggatt ctttgccgtc gcttctgcgg       240
     ccgttggatt tgcacgtgtg gttgctggag acgatttaga ggatcggaga catcgctcgc       300
     tgttcctgct gaccatcatt gctgtgccca aggcccaaag tggacatctg gagatcgcca       360
     aaggacgtca gataagtaca gtgtgtgcta gaggttgagt ggttgaggta cctggcttgg       420
     attgcattgt gcgcctgcca gtggtgtgct tgctctacct agggtagaca aatacaaaac       480
     gctcctgatg agcatataaa tcgcatgcaa gattgtacaa tttaagtaga tattgtggag       540
     atcgtgtttg agattctctg gttttccgat ttattgcctt tgaaggcaca atttgagatt       600
     gctggaaagt gattaattca ctttgatmat tttggcctgt cttctgtcaa ttcgcgcggt       660
     cgtttgaggt ctcgggagtg agttttgcta acagtgattg tgtagtgctt ccagtcatca       720
     tgccagctgc ggatcttaga gcacttgtga agcaggaacg tcatgcctgg gttacgttgg       780
     acaacataca ggagtttttg agaacgtacg atgaccaacg cgacaagaat gaactacagt       840
     ttcgaatgca gagattagac gaagtgtaca ataaatattg tgaagtgcga gtgaaaatcg       900
     aagttattac tgatgacttg gatactgttg aagtggaagg tgctgttggt gctgaaggtg       960
     tagatgatgc tccagtcgat caagcagcca tggccgaggc tcgacagagg gagaacgaag      1020
     agatcttcaa ggaattcgag aacaagtatt ttcgcttgaa gcagcaactc catacgaaga      1080
     tgatcggaaa ccaaggggtg atagttgaac gacaagcagg agccgaggtt tgtcagccgt      1140
     cgaggatgaa gtatccggaa ttaagactcc caacctttac tggaaaacac tcggattgga      1200
     tcaatttccg ggacaacttc aggtcgttga tacacgccaa caaccaacta aatatgattg      1260
     ataagttcaa ctacctacga agttcattga aggacgaagc gctgctacaa atcaatcaga      1320
     tccaagtcac tgctgcaaac tacacacttg cgtgggagac tctagaagcg aagtacgaga      1380
     atcacgaact gattgctcag gagcatttga gagctctctt cgctgtcgcg ccaatgaaga      1440
     ctgaaagctt tcagggactc aatcatcttc tgacgacgtt cagggtgaac cttcaacaat      1500
     tggagaagtt aggagagagg cctaacgatt ggagtactct gttagcgttc atgctttccc      1560
     aaaggctgga cgacgatacg attcgtcact gggaaactca ccatagttca aaggacattc      1620
     ctacttatca gcgcatggtg gaatttctgg agaatcactg ttccatactg cagtccacgt      1680
     ctgcacgaaa aagcagtgac ttcaagcgcc cggtcaagcc tccagtggtt cacgctgctg      1740
     tatcgcccag cggaaactgt caaatctgta acggtggagc acattcgatc gaacagtgta      1800
     ggcgtttcgg gaaaatgaag gtcatcgata ggaaggcgac cgttcgacgg cttggattgt      1860
     gcttgaactg tctacggcca gggcactacg tcgtggattg ttcgagatct tcgtgtggca      1920
     agtgtggtca aaaccatcat cacttgcttc atccgttcgt ggcttcagtt caacaagagc      1980
     aaacttcgag tcagccctcc tcccaaggcc caccgaaaag acctcaaagc gcgaatccgc      2040
     caccccagca tccgaatcag gcccaaaacc ggaacacgtc tcataacact ccacagtcta      2100
     cacaaacaca aagtacatct tcgcaaaatg cacctcccac caatactcca actgtacacg      2160
     ccactgctac accattcgaa acgctccgtc agtcaaacat cgcgcttcta tctaccgcta      2220
     tcgtgaagct cggtgatcgt tacggaaaca ccgttcttgc acgcgcttcg ttggataacg      2280
     gatctcagat ctgtgttatg tctgaatcgc tgtcacaaag gttgaatttt caacgtctac      2340
     gagaaaattt gccggtcgac ggagtgggtg gttgttcatc tgtcagcaaa caagcagtgt      2400
     tagcatcagt ttcgtcgcgc agctcatcgt acgtgtcgtg tgagctgaaa ttctacgtgc      2460
     ttccgaaggt gacgtcaaat ttgccacagc aaaacattga cgtgtcttcc tggaatatgc      2520
     cagaaagaat caccctagcg gatccatcct tcaacgaatc cggagccgtc gatgtcattc      2580
     ttggaaacat catcttctac gaccttctgc tgaacgcaca gcggaggatt tctgattcag      2640
     gattgattct acgtaataca aggctgggat ggattgtcgc cggcggtctt cctgaaacgt      2700
     ccgtggtcag ttacagcgct gtwgcttcct cgccagtgac tactgaagag ctatacgagg      2760
     agctagccaa attctgggag ttggaatcat gtcgcacgaa aagttgcctg tcgattgagg      2820
     agtccacatg cgaagcgatc ttccagaaga cgactaccag ggattcagat gggaagttca      2880
     gagtaacgct accgaagaag aagaacatgc tggaaaaact tggagagtcg aaggcgattg      2940
     cgaagaaacg tttcctagct atggaaaggc ggttaaatgg aaacccggaa atgaaggcgt      3000
     tgtatacggc attcatgcac gagtaccttt ccatgggtca tatggaagag gtagccagcg      3060
     atgatgaaga gccaggtccg gaatactatg ttccacacca cgcggtgatc aaaccagaca      3120
     gcactactac aaaactaaga gtagttttcg acgcatcctg ttcaacggac acaggtgtgt      3180
     ctctgaacga cgttctgatg gtgggacctg ttgttcagga cgacctccga agcatattgt      3240
     tgcggttccg gttgttcaag tatgcagtag taggagacgc ggaaaaaatg taccggatgg      3300
     tatggcagca caaatccgat cagcagttac acaaaatatt ttggagagac tcgattgatg      3360
     aaccattgcg agcgtacaag ctcaccaccg taacatacgg aacagcatca gcgccttacc      3420
     tcgccacgcg gtgcctgaac aagtgtgctg aagatggagc agagcgatat ccatcgggat      3480
     cagtggtggt caagaagagc ttctatgttg acgacatgct tgcaggtgcg gacacagttg      3540
     aggaaagtca acagctctgt aaggaagttc tggaacttct gaagggttct gggttcaatc      3600
     tgcggaaatg gaactctaac aatccggaag ttctgaagga aatccctttg catcttcgag      3660
     acgatcgagt gaagctggat ttggatgaga aggcaactgt gaagacacta gggctcacgt      3720
     gggagccggc tacggatacg ctgtggatga aggttccaga ttggaggcca ggtgggccaa      3780
     ttacgcatcg tattgtgctg tcggagatag cacgcctttt cgatccctac ggcctagttg      3840
     gtccagtgat agtcctcgga aaactttttc ttcaagatct ttggagagga aaatactcct      3900
     gggatgaacc actaagcggt gagctccagc cgaaatggct ggagttccga acgaatctgc      3960
     gtgagttgga tgccatatct gttcctcggt ggatcaactt cggaaaagac gtagtctcgt      4020
     gcgagttcca tggattcagc gatgcaagtg acaaggcgta cggagctgcg atatatttgc      4080
     gttgcgtgaa tcaagacggt caagtcacaa tcaatcttct aatggccaag tcaaggattg      4140
     cgccgttgga agacctcagc aaaagaaaga agaagcagaa tatcccacgg ctggagctat      4200
     cagcagcgct attgttggcg catctctttg aatctgtctc ctccagcatg atgatagctg      4260
     cgaagtcttt cttctggacg gactcgacaa ttgtaaaatg ctggatatct tcgcatccgt      4320
     ctagatggca gccatttgtg gccaatcgtg tatcggagat acagcatgcc acgacggagg      4380
     gaatatggaa ccacgttcca ggaatcgaga accccgcgga tataatttcg cgaggcgccg      4440
     ctccggctga gatagcgaat aattcgctat ggtggaatgg tccggaatgg ctgagaaagg      4500
     aaactcacta ttggccgaag aacgcgcagg ttcatgaaca gcagttcgat tcagttactc      4560
     tggaggagag accgctagtg tcagcagttc tgcagattct gcctccaagt gagatattca      4620
     agttacgttc gagcctttcg aacctcgttc gtccgactgc ttggttacgc cggttttcct      4680
     tcaactgtaa accccagaac aggcagcaac ggagatcggg aatcatcaca gtcgcggaac      4740
     acgaagaagc cttactagtt ctagtaaaac tagctcagtc ggaatgcttc ccattggagt      4800
     tatcggatct tgcagcaacg agtgctgtta ggccagcttc gaaacttcgt accctgaacc      4860
     cgaagatgat cgatggagta ctttgcgtcg gcggccggct cggtaatgct ccagtctccc      4920
     gcgggcgtag acacccgatc gtactggaga accgacatcc actgacgaag ttgataatga      4980
     tcgattacca ccatcgactg ctgcacggag gaccgcagtt gatgatatcc tgtgttcgcg      5040
     aaaggttttg gccactgaac gttcgaaacc tggctaggca ggtgactcac gagtgcgtga      5100
     agtgtttcag agcgaaacca cgagctcacg agcagttgat gggtgattta ccgttcgaga      5160
     gagtatcgcc agcccctgca tttcaacgtg tgggaattga ttactgcgga ccgttcgagt      5220
     tgcagcatgc gagacgaaag ggcgctccgt taaaatgcta catctgcctg ttcgtctgca      5280
     tggtcagcaa ggccgtccac attgaagtgg ttacggacct tacagctgat gcatttcttg      5340
     ctgctctacg gaggtttgtt gcccgacgtg gaaggccgga acaaatattc tgcgacaatg      5400
     cgacaaactt cgtgggagcg cgtaggcagc taagcgagct caatcgcatg tttagacagc      5460
     agcagttcca agaacgactg tctacagaag cagcgcgaaa ctccatcacc ttcaacttca      5520
     ttccggccaa gtcacccaat ttcggtggct tatgggaagc cgcagtcaag tcgctaaagg      5580
     gacatatgcg gaaggtcatc ggcactagaa ggctaagtca agacgagatg cagacagttg      5640
     tgatacagat agaggcatgc ctcaattcga ggcctctgac tccgctgagc aacgatccag      5700
     ccgacttgca ggtgctaacc ccaggacact tcctgatcca acgtccactt actgcgatac      5760
     ccgagccaaa tcttccggac ctatcagaag gtagactctc cagatggcag aaagtgcagc      5820
     gctacagtca gatgatctgg aaacactggt ctactgacta tttgtcaaac ctccaacaac      5880
     gcaacaaatg gacaaggcag cgaaacaacc tgaacgtcgg gactatggtt ctgttgaaag      5940
     aggacaacat tccaccgctc aagtggaagc tgggacgagt gatggagatc taccctggcc      6000
     aagacgggaa cgtgagggtt gtcgccgttc gcacacagga cggtcgcttt caacgggcaa      6060
     tatcgaaaat ctgtattctc ccgatacgcg acaaccagac cgaggaagac caggactaag      6120
     tatttacgcc cccttatggg gcatctttag gcatcctgcg gtatagaata tcgctactgc      6180
     ctgggggcaa ccctacagtt acgtattcta tcatttgtgt gtccgggacc attctgatgc      6240
     gttctccctc gacagtgttc atctacatta cgaatcctgc gtggagccat catctgttct      6300
     ggcttatatc gtcgccctat cctgtaaatc tcatcgaagc taagtacgcc cccatttggg      6360
     gcatccgttg gcaatccgtg gcatcctagc cacatccgcc gagggggcga cacctaagtt      6420
     atgtttcatt catccaatct tgaattccgg atcccaatcg ctgttattct ttggcagata      6480
     cggatcaact ctaccaattc gtttgcggtc atcgctgaga tcactggaga tcaacacagc      6540
     taagtatggc cccatttggg gcaacaattg gcgattcacg acggttaacg tcgtatatgc      6600
     caggggccgc agcacaagtt atgtttatta gcgttaagta ttatttcgga agccaatcga      6660
     atttccttcc atcagcatca acccacggta cgcaaactcg ccggacaagt actcttccac      6720
     ggatcatcat caatctctgg cagtcaacga taatcggaga tgccttcaag ctcgttctac      6780
     cactacaact tccgctcaat cgtttcacgc ccccatttgg ggcacacttc ggcaaatcag      6840
     atagtttcat ctggtatcgc cagggggcga ctcctaagtt acgtccctca tctttcaaca      6900
     ttagcgtcgg acttaagcca tcttattctc caacaggaaa cgaggatacg gggatcaact      6960
     ctagtggtca aggtcatcaa gattgttcca ggcagcggaa gtttgtgggt agtgaagcca      7020
     ccaaaggtca tcatcaggaa atcaacagat caggtcgaag ttatcgctga ctttcagacc      7080
     ggctgaatgg cccaatcgca aagcgagtgg atgcatcagc tcgggtagag ttcgacgaga      7140
     attgaaggaa ccgtgaatta tctagtacca cattttgaat tgtttcttta cctttagaat      7200
     atttgaatta attgttttga gtgaactcaa ggcggccggt a                          7241
//
ID   BEL-193_AA-LTR repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-193_AA_;
KW   BEL-193_AA-I; BEL-193_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-332
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 878-878 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 332 BP; 96 A; 58 C; 79 G; 98 T; 1 other;
     tgttagggag attattwtaa attaactata tttttggcct ttactgtaga acagaatatg        60
     gaatttatgt ggtagataaa ctctcaatga gtgaccgtgt gcgaagagat aggctctcgc       120
     agcatccctg ataaggcaga gataggagaa agctcagttg cttaccattc gccgccggta       180
     tcggtttata atatacagtc cacttcgagg gtttagtttc aattaaacaa agttttttag       240
     tgatcgtatc accgggtttc gaatgctaaa tacggccgaa caggtgtatt cgcgggtgcg       300
     cacattagtg caaaatcggt agtcatcgaa ca                                     332
//
ID   BEL-194_AA-I repbase;    DNA;    INV; 6890 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-194_AA_;
KW   BEL-194_AA-LTR; BEL-194_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6890
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 879-879 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5953-6501] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1336..5370
FT                 /product="BEL-194_AA-I_1p"
FT                 /translation="MQSTSSLPFSTAVHRLPQIPENSSTDPTSSGAARVHV
FT                 PAPPPSSITQRPPVVAHPFVSHHQHDNMVQSLFSVPIPSVVQGASTLPADP
FT                 VAYRQPTYPMFPPMYQSATAAASSPSFGLVSAAPPAISSSSTSARSLVPPP
FT                 NPSAPHAVPSREVLFPQPPGKPDNYPLQTNTPPNSNGDNLQHLMRQFGSIA
FT                 LSPSQSPLLNTNLATFAPSPSQLAARQVMPRDLPPFSGNPADWPVFISSFM
FT                 NTTLACGYSSAENLCRLQRSLKGAAYEAVQSRLLLPESVPHIMETLHMLYG
FT                 RPELLISALLDKVRTAPSPKIEKFQTIIDFGMSIQSLCDHLEVAGQTAHLS
FT                 NPSLLAELVAKLPPHLQMEWGSYLQGFSEVNLKTFGLFMSSVVKAVSKVTV
FT                 FSSSSGRTNAVDKINSKSRGSINAHHSETNTNDEFNTPTNREEAKECPVCK
FT                 NAGHRIQDCRTFKSLSVDGRWKCVQSNGLCRNCLNSHGRRSCRKISSCGTN
FT                 GCEFRHHPLLHSTRSSTDTQMQPLVNTAENHTHRQVEQSLFFRVLPVTLHG
FT                 PKGTVETFAFLDDGSSLTLIEDSLVKELGVEGVTMPLCLLWTANMTRTEKG
FT                 SQQISLAVSSAGGKKYSLQEVQTVRELSLPVQTLSYEHLSEEFKHLRGLPV
FT                 RSYTKAIPRLLIGINNLDLMVPMKVREGLRREPVAAKTRLGWCIYGGKSNG
FT                 SQQPSVNYHACGCSSDQTLHDLVKQFFATEEIAVQSTTPLVSEAEKRAQQI
FT                 LEDTTFRVGNRFETGLLWKFDHVELPDNYNMALRRLECLEKRMNRNPELRQ
FT                 TLQRQLEEYQLKGYAHRATEDELASADMRRVWYLPLGAVVNPRKPGKVRMI
FT                 WDARAAVNGISLNSVLLKGPDQLTSLPGVLMRFRQFKVAVSSDIREMFHQI
FT                 YIRKEDRHSQRFLWRDTPTDKPEVYIMDVATFGSTCSPASAQYIKNKNAKE
FT                 FQEMYPRAAEGIVKNHYVDDSLESYESEEEAIKTSQEMRFIHEQGGFELRN
FT                 WLSNSRTTLSALGETDSREDKRFAADKQCEYERVLGLLWLTEEDAFGFSTE
FT                 MKPEISEVAKKDECPTKRQMLKCLMSLFDPLGLLSIFVVHGKILLQEVWRS
FT                 GAQWDEKVNDELHIRWKNWTRLFEAVRILEIPRCYFPGATKERYRELQLHI
FT                 FVDASESAYCAVAYFRTLNANKSPECALVAAKTKVAPLKAQSIPRLELLAA
FT                 VLGAHLSQFVEGNHALRITRKVFWSDSATVLSWLRADHRRYKQFVACRIGE
FT                 LLTVTDVKNWRWVPSKQNPADIATKWGSGPDLSANSVWFNGPHFLRLSEAE
FT                 WPTQRMYTPPTEEELRPCYAHKAIQIPEELVDV"
FT   CDS           5923..6888
FT                 /product="BEL-194_AA-I_2p"
FT                 /translation="MAPLPLARMASFARPFTYTGLDFFGPLTVKIGRSTAK
FT                 RWVAVFTCLTIRAVHVEVAHNLSTESCIKCIRRFICRRGSPAEFYTDNGTN
FT                 FQGAERLLKEQIEQLAVTFTGTTTKWMFIPPGTPHMGGAWERMVRSIKTAV
FT                 EAAYNNNRKLDDEALSTFMVEAESIVNSRPLTYLPLTSEESEAITPNHFLL
FT                 GSSSGVRQPIVEVTEPAEALRTSWNQVQHQLDVFWRRWIREYLPTLTKRPK
FT                 WCGEEKPIAEGQLVMVVGEGRRNEWTRGRIVETIKGADGRIRQAIIQTARG
FT                 LARRPVARLAVLEVDEGVKTGPGGQCYGGE"
XX
SQ   Sequence 6890 BP; 1919 A; 1692 C; 1692 G; 1559 T; 28 other;
     aattgtaagt aacttaaact tttttttttt tttttttgtt gggatttgaa ccactgcgac        60
     cattaattga tctattgtta gacataacct aatttgaaag tgatcatgca ggaatcacac       120
     aagacataaa gagggagaat tgtccttaaa tctacacatg caaaccgatt tatgtaagta       180
     aaacttcaaa caaaacaaag atactaaagc taatcagaaa ataaaattta cagcaaaagc       240
     tacgttacaa caaacaacaa acmcgttgta atttgctcga cgaaaatcga scttgtgaag       300
     gacgttctta tcccctcaaa attttgggaa caatcttttg ataaatcgac agcagtttaa       360
     ctcgtcgata tggaatcgat tcctccgcaa aatattccgg agatgatcag tgatcagaca       420
     ccgctccatg cacacacgct cgacgaacaa cggtcagact gcgtacagtg cgatcgcctg       480
     aacggcgagg agaacatggt gcagtgcgac agctgccaga cttggtggca cttttcgtgt       540
     gccggcgtca cagattcgaw gagggatcgg tctggtcgtg ttmaaaatgc caggtkgatg       600
     atcckggcag caccgcacgt asatccmgtg gattccaaaa tttcagccgt tcggggttcg       660
     agattcgaga acatcagcgc gaataaattt gcagcttagt aaactacatt agcttcagga       720
     ttttgaatag aagtttgtck agsagaagcg taagttgctc gastckcaac tggagctaga       780
     wgaggaawac gagagtmctc ggaktaaacg awgtmgagwt agwcagcaaa cagccgcgcc       840
     ggggcggggg ggcgaccaga aggggccccc ccggcgcagt tataccagcg ctgccgcccg       900
     cttcaaacct tgccgattcg ataggctggt attgctggta atcacgctcc aactcaaacc       960
     cagcaacctt ttaattggaa tcagccaaat cttctcaaac atcctgcktt gatagaccaa      1020
     agatcgactc taagcatccg gtgctcgtcc tgcgataggt tcgacaacat tttcgaacca      1080
     ggaaccgaag atgcaacmaa gcgtggcgtt ttcaataasg tggcagggaa cgtacccttg      1140
     gcgcaatcaa ctccagcaca gttgcccact atagatcggc agtttcaacc agtagtcgga      1200
     ttactacctc agccattccc accgggcaca acggctgtgc ctaactcaac atcggtaccc      1260
     tacacggctt cagtaggtgt agagtacgct tcgacgaata ttcttacggc agcaccgtat      1320
     ccgatttcga cagttatgca gtcaacaagc tcgctgccat tttccaccgc cgtgcaccgg      1380
     ctaccacaaa taccagagaa ctcatctact gatccaacgt cgtcgggagc tgctcgggtc      1440
     catgtaccgg ctccgcctcc gtcatcgatt acacagaggc caccagtggt tgcccatccg      1500
     ttcgtttcgc atcatcaaca cgacaatatg gtgcaatctc ttttcagcgt acccatacca      1560
     tcggtagttc aaggggcatc aacgctacca gcggatccgg tggcataccg ccaaccgacg      1620
     tatccgatgt ttccaccgat gtaccaatcg gccacagcag ctgcttcttc gccatcattt      1680
     gggcttgtgt cggcagcccc gcctgcgatc tcgtcttcgt caacgtctgc gagatcactc      1740
     gtgccaccgc ccaacccctc agcaccgcat gcagtccctt caagagaagt attattccct      1800
     cagccaccag gtaagccaga taattatcct ctacaaacaa atacaccacc gaacagtaac      1860
     ggtgacaacc ttcaacattt gatgaggcaa tttggtagca ttgctttatc accctcgcaa      1920
     tcaccactgc ttaatacaaa tttagccaca tttgccccct cgccatcgca gttagcggcc      1980
     aggcaagtga tgccgcgcga tctgccccca ttttctggca atcctgccga ttggccggta      2040
     ttcataagca gtttcatgaa cactacactg gcttgtgggt actctagtgc cgaaaatctt      2100
     tgccgtctcc aacgaagcct gaaaggtgca gcgtacgagg ccgttcaaag tcgattactt      2160
     ctgcctgaat cggtacctca tataatggaa actctgcaca tgctctatgg tcggccagag      2220
     ttgctgattt cagcgctttt ggacaaggtg cgtacagctc cttcaccgaa aattgaaaaa      2280
     tttcaaacaa taatcgattt tggaatgtcc attcaaagtc tttgcgacca cctagaagtt      2340
     gcgggacaaa ccgcacatct gtcaaatcct tcccttctcg cggaacttgt cgccaaactc      2400
     ccaccgcatt tacaaatgga atggggctcc tatctccagg gcttttcgga agtgaatctg      2460
     aaaacattcg gtctcttcat gtccagtgtc gtgaaagcag tgagtaaagt gacagtgttc      2520
     tcaagcagca gtggaagaac caacgccgtg gataaaatca actcgaagtc gagaggaagc      2580
     atcaacgctc accacagtga aacgaacacc aacgatgagt tcaatacgcc taccaaccgg      2640
     gaggaagcca aagaatgtcc ggtctgcaaa aacgccggtc atcgtatcca ggactgtcga      2700
     accttcaaat ctctctcagt ggatggacgc tggaagtgtg ttcagtcgaa cgggctttgc      2760
     cgtaattgtt taaactcaca cggcagaaga agctgtagga aaatcagcag ttgtgggaca      2820
     aacggttgtg aatttcgcca tcatccgctt ctacattcga cgcgcagcag cacagatacg      2880
     cagatgcagc ccttggtgaa cacggcagaa aaccacactc atcgccaggt ggaacagtcg      2940
     ctgttcttca gagtactgcc agtgaccttg catggaccca aagggacagt ggagacattc      3000
     gcttttctcg acgacggatc gtcgctaacg ctgattgagg acagcctagt caaagagctt      3060
     ggagtcgaag gagtaacaat gccactgtgt ttactgtgga cggcgaacat gacacgcacc      3120
     gagaaagggt cgcagcaaat atcgctggca gtttcatcag ccggaggaaa gaagtactca      3180
     ctgcaagaag tacaaacagt tcgggaattg tcgctacccg tacaaacact ctcgtacgag      3240
     catctctcag aggagttcaa acaccttagg gggctaccag ttagaagcta caccaaggca      3300
     attccaaggt tgctgatagg aatcaacaat ttggatttga tggttccgat gaaggtgcgt      3360
     gaaggcctcc gacgtgaacc tgtagctgct aaaaccagac tagggtggtg catctatggc      3420
     ggaaaatcaa acggtagtca acagccatca gtgaattacc atgcttgtgg atgttcgtca      3480
     gatcaaacat tacatgacct cgttaagcag ttctttgcta cggaggaaat cgccgtacaa      3540
     tccaccactc cactcgtatc ggaagcagaa aagcgtgccc agcaaatact agaggatacg      3600
     acgtttcgag tcggtaaccg cttcgaaacc ggtctacttt ggaagtttga tcacgtagag      3660
     cttccagaca actataacat ggctcttaga cgacttgagt gcttggagaa acgtatgaac      3720
     cggaacccag agctccgaca aactttgcag cgtcaattag aagaatacca gttaaaaggg      3780
     tatgcgcatc gtgccacgga ggatgaacta gctagcgccg acatgcgccg cgtatggtat      3840
     ttgccgctag gagcggtagt aaaccctcgg aaacctggca aggttcgcat gatttgggat      3900
     gctagagcgg ccgtaaacgg gatttccctc aattcagtac tgctaaaggg tccggatcaa      3960
     ctaacgtcac ttcctggtgt tctgatgcgc ttccgtcagt ttaaagtagc agtctcctcc      4020
     gatataagag aaatgtttca ccaaatctac atacgcaagg aagatcgcca ttcacagcga      4080
     ttcctttggc gcgacactcc taccgataaa cccgaggtat atattatgga tgttgccacm      4140
     tttggctcca catgctcccc tgcgtcggcg caatacatca aaaacaagaa tgccaaggag      4200
     tttcaagaga tgtatccccg agcagcagaa ggaatcgtga agaaccacta cgtggatgat      4260
     tccctggaaa gctatgagtc tgaagaagaa gcaatcaaaa catcccagga aatgcgcttc      4320
     atccatgagc aaggtggctt cgaattgagg aactggctat ctaatagtag aacgacccta      4380
     agtgctctag gtgaaacaga ttctagagaa gacaaacggt tcgcagcaga caaacaatgc      4440
     gagtatgaac gagttcttgg gctcctgtgg ttgacggaag aagatgcctt cggtttctcg      4500
     actgagatga aacccgagat cagtgaagtg gctaaaaagg acgaatgccc wacgaaaagg      4560
     caaatgctga agtgtctgat gtctctcttc gatccgttgg gcctgctgag catattcgtg      4620
     gtacacggaa agattctcct gcaggaagtg tggagaagtg gtgcacaatg ggatgaaaaa      4680
     gtcaacgacg agctccatat aagatggaaa aattggacac gactgtttga agctgttcgc      4740
     atccttgaaa ttccccgctg ttactttcca ggcgccacaa aagagcggta ccgtgaacta      4800
     caactacaca tatttgtaga cgccagcgag tccgcgtact gtgcggtcgc gtattttcga      4860
     acgttgaacg ccaataaatc acctgaatgc gcacttgtgg cagccaaaac aaaagtggcc      4920
     cctctgaagg ctcaatctat accgcgcttg gagttgctgg ccgcagtact tggcgctcac      4980
     ttgtcgcagt tcgttgaagg aaaccacgct cttcgaatca caaggaaagt attctggagc      5040
     gactctgcca cggtgctttc atggttgcgg gctgatcatc gacggtacaa acagttcgtc      5100
     gcctgcagaa ttggggaatt gctgacggtt accgatgtca agaattggcg ttgggtaccc      5160
     tccaaacaaa atccggcgga cattgcgacg aaatggggaa gcggtccgga cctatctgca      5220
     aacagtgttt ggtttaatgg tcctcatttt ctgcggctgt ccgaagcaga atggcccaca      5280
     cagcgaatgt atacgccacc aactgaagaa gaacttcgtc catgctatgc gcacaaggca      5340
     atacaaatcc cggaggaact ggtagatgta wcccgctttt ctcggctaac aagagctgtt      5400
     cgcactgccg cctgtgtgat tcgttttatt ggaaatatca aacaaaaggt tgctggacaa      5460
     atacgaaatt caggcccctt gacttcagag gagctkcagg aggcagaaag tctgcttatt      5520
     cgccaggcac agtggcaaag tttcccggat gagatgatgg ttctcgagag aaatcgttcg      5580
     aagccgctga asgagcaaat accactggag aaaactagtg atatttttcc actgtgtcca      5640
     atattagaca accaaggcat cattcgagtg gacggcagaa tcggagcggc tccaaatgtt      5700
     gaaaacgaag caaagtttcc agttatcctc cccagaaaac acgtattgac tacgctactg      5760
     ctgaactatt atcatcgtaa attcgttcac ggcaatacgg aaactgtagt gaatgagatt      5820
     cgccagcgat actacgttcc acgactcaga acggcagtga gtagtgtagc cagagcttgt      5880
     caatggtgcc gagtttacaa atgtttacca aaggttcccc gcatggcgcc gctaccgcta      5940
     gctaggatgg cttcgtttgc acgaccgttt acttataccg gactggactt tttcggacct      6000
     ttgacggtaa agataggcag aagtaccgcg aaacgctggg tagccgtatt cacgtgccta      6060
     acaatacggg cagtgcacgt ggaagtggca cacaatctat ctacggagtc ctgcatcaaa      6120
     tgcatccgtc ggtttatctg ccgtcgagga tcacctgctg agttctatac agataatgga      6180
     acgaatttcc agggcgccga gagactactg aaggagcaga tagaacaatt agcagttaca      6240
     ttcacaggaa ccactaccaa atggatgttc atccctcccg gtactccaca catgggcggg      6300
     gcctgggaga ggatggtccg ctcaattaag acagccgtgg aggcggcata taacaacaac      6360
     cgcaagctgg acgatgaagc gctgagcacc tttatggtgg aggccgaatc aattgttaac      6420
     agccggcctc taacatacct accgttgacg tcagaagaga gcgaggctat aacaccaaac      6480
     cacttccttc tgggtagctc aagtggagtc cgtcagccga tagtcgaagt aaccgaacca      6540
     gcagaagctc tacgcacttc ctggaaccaa gtgcaacatc agctagatgt gttctggaga      6600
     aggtggatta gggagtacct cccaacgctg actaagcgac caaagtggtg tggagaagag      6660
     aaaccgatag ctgaaggaca gttagtgatg gtggttggcg aagggcgacg gaacgagtgg      6720
     actagaggcc gaattgtcga aactatcaag ggggcagatg ggaggattcg acaagctata      6780
     atacaaacgg cgagggggct tgcgcgtagg cctgtggcta ggcttgctgt cttagaggtt      6840
     gatgaaggtg ttaaaactgg acctggtggc cagtgttacg ggggagagga                 6890
//
ID   BEL-194_AA-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-194_AA_;
KW   BEL-194_AA-I; BEL-194_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-296
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 880-880 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 296 BP; 101 A; 53 C; 54 G; 84 T; 4 other;
     tgtggatact ggcatcactt ctggtcacga cactgtgacg gctggaacag ccgtttatgt        60
     acctgtcaak ctgacaggtc ckaaagggaa agacaaaaag aattgaaaag ctttatctat       120
     ctatcaacca ttgttaaagt agaacgtgaa tttgatgacg ctaaggtgaa catttataaa       180
     gcacaatgca cmagtaactg aactaaatct aatttcctta cagctaaatt acgagctaaa       240
     atctgtaaaa tctaaaawta gttgttcctt acctaaattg ttagtggttt catgca           296
//
ID   BEL-195_AA-I repbase;    DNA;    INV; 5970 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-195_AA_;
KW   BEL-195_AA-LTR; BEL-195_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5970
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 881-881 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5007-5567] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..5906
FT                 /product="BEL-195_AA-I_1p"
FT                 /translation="MVQCSRCLKWYHFSCVGVDQSIAELVWYCRTCLGEDV
FT                 SARESLGQPGITRVQPPRAAKKGKNSTGKSQDKNVQKRIDAPIGSSEQSEV
FT                 AKQPAGQLSISKGQVSGEAGTSKTQRLTNTERLLSINPSRTRSHSGNSRSE
FT                 SHTNSESSKKSRSSSQKTMSKGSKRDLALLRIEEMKERSRLEALEEENQLQ
FT                 ILKLKQKQIERKRRELEELQQLSKLVEEESDCNEDPEKQDKVEIDYIDKVQ
FT                 GWMSSSNPLHPGRQRRLSESSMEEISLMIPEADSERAARRRHLQLRSSSML
FT                 AGPTKLQIASRQVFPKNLPSFSGHPQDWPLFVSAYEQANASCGFTNSENLI
FT                 RLQQALHGKALETVRNLLLLPENVPTIMDKLRRRFGNPEVLSTMLAQRVQK
FT                 LEGPDSENLESLIEFGSAIEEFTQHLYVSKLNDHLKNPILMQSLVQKLPPC
FT                 YAMQWVEYKRRSRIVDLKTFGSFMEDLVDKALEVTFERMDLAATKRREKPK
FT                 AKVFTHLVEGDNEASGIQQNNKVQTTVVQASPRRDISCSICDEPGHFGRDC
FT                 REFRCASVERRWMIVKHLGLCALCVYNHGKWPCRSKIRCEIDGCKGLHNPL
FT                 LHPPISSETAKMEAHCNSHSSMNKTVLFRIIPVTLYSERNKFDTLALVDEG
FT                 SSTSLIDGEIAEFLQLSGPREPFQMRWTNGVSRTETQSRNVEMKISGRNCK
FT                 AFDLCIARTVKKLDLPAQKLDSSRLIEEFHHFGDIQIPSYDLDSPKLLIGI
FT                 DNMHLIAPLASRVGKRGEPIAVECKLGWTIYGPRPNMIADVHFLGHHRCVC
FT                 EECSKADQELNQMLRDNFKLEAVGESPIRLESKEDCVARNILERTIKRIGN
FT                 RFEIGLLWKNGIPRFPESYSMACKRLTKLEARLERNPGIRESLQKQIEEYV
FT                 MKGYAHKITDQELQETPPERCWYLPLNYVVNSKKPGKVRTIWDAAARTNGV
FT                 SFNDSLLKGPDLVAPLSGVINGFRERQVAFGGDIRETFHQILVRKEDRQSQ
FT                 RFLFRFDMNFEPEIFVMDVVIFGASCSPCLAQYVKNMNAREHVQEYPEAAD
FT                 AIIRKHYVDDYFDSVDTENEAIVRAKAVRKVHANAGFEIRNWVSNSSKVLK
FT                 ELGEVEPQEVKLLDMSASDTERVLGIMWRPDIDSFVFSTEFRSELQPYIKE
FT                 GAWPTKRIALRCVMSMFDPKQFLAPLLIHGRILMQNLWRSGIGWDEKLGEE
FT                 HYDQWLRWTRLLPLIDDIQIPRCYLGEMSSTVYDTVQLHVFADAGEDAYGC
FT                 VAYFRFTDGKNVHCAFVEAKAKVAPLQYLSIPRKELEAAVLGARVMKAICE
FT                 SHSVKIKKYFLWTDSNAVISWVKSDARRYKPFVAHRIGEILSVTNPENWRW
FT                 VPTKDNAADDVTKWGNATQVCSDNRWFRGPDFLYSAEEDWPEQKHKSIEVE
FT                 EELRASVLFHDIVLPDVILSRIEHISKWKVLVRMVATMYRFITNCRRKIKK
FT                 QSIEALPYSKKGATTVSAEQVPLRQEEYLLAENYLWRVAQGAEFADEVKTL
FT                 FKNQDSPKGQPRMIEKSSPLYRLSPFLDECNVVRMEGRTVAADYAAFDVRF
FT                 PVILPKQHLIVEKLVEFYHQKCGHGSREMVVNEVLQRFYIPGLRSLVERVS
FT                 RHCLWCKVQKAKPVVPRMAPLPASRMAVSEHPFSYVGVDYFGPIEVVVGRR
FT                 REKRWVALFTCMTVRAIHLEEVYSLTTQSCEMAIRRFVKRRGSPIEIFSDN
FT                 GTNFVGASKDLEAQIRTINVECADTFTGAKTKWTFNPPSAPHMGGVWERMV
FT                 RSVKAAMSVFANGERLTDEILQTTLAEVEHLINSRPLTYVSTNVQEDKEAL
FT                 TPNHFLTSCPLIECMPSRNAMQLGDRLRNSYCQAQYLAEELWSRWQREYLP
FT                 LMNRRSKWLEERKPVAVGDLVYVADSEKRRTWERGVIEEVFTGDDGRIRSA
FT                 MVRTKTGLKRRAVAKLAILEI"
XX
SQ   Sequence 5970 BP; 1825 A; 1141 C; 1546 G; 1458 T; 0 other;
     ataatcctca aaaaaatcta ccactggatg cgatctaccc ctgctgcgaa gaagacgacc        60
     agtatgacgc gatggtacag tgtagtcggt gtctgaaatg gtaccacttt tcatgtgtcg       120
     gagtggacca aagcatagcg gagcttgttt ggtattgccg tacatgcctc ggagaggatg       180
     tatccgcacg tgaatcatta ggacagccag gtatcacacg cgtacaacca ccgcgagcag       240
     ccaagaaggg taaaaattct accggtaagt cgcaggacaa gaatgttcaa aagaggatag       300
     atgctccaat cggatcgagc gaacagagcg aagtagctaa gcagcctgca ggccagctaa       360
     gtattagtaa aggtcaggta tcaggtgagg cagggacatc taagacacaa agattaacga       420
     atactgaacg gttactgtca ataaatccgt cgcgtactcg ttcacatagt ggaaattcgc       480
     gttccgagag tcacaccaat agtgagagtt cgaagaaaag tcgcagttca agtcagaaaa       540
     ctatgtcgaa gggttcgaag cgtgatctgg cattgttgcg aattgaagag atgaaggaga       600
     gaagtcgttt ggaggccctg gaagaagaaa accaactgca aatattgaag ttgaagcaga       660
     agcagattga gcggaagcgt cgggaactag aagagttgca gcaattatcg aaactggtag       720
     aagaagaatc tgattgcaac gaagaccccg aaaaacaaga caaagtggaa atcgattaca       780
     tcgataaggt gcaaggttgg atgagctcta gtaacccatt gcatccgggt agacagcgac       840
     ggctttcgga aagtagtatg gaggaaattt cattgatgat tccagaggcc gatagtgaaa       900
     gggcagcgag acggcgtcac ctgcagctgc gaagttccag tatgctggca gggccaacga       960
     agttacagat agcttctcgc caagtattcc ccaaaaatct accgagtttt tcaggccacc      1020
     cgcaagactg gccattgttt gttagtgcct acgaacaggc aaatgcgtcg tgtggattca      1080
     cgaattcaga aaatctcatc aggcttcaac aagccctcca tggaaaggcc ttagaaactg      1140
     taagaaatct gttgcttcta ccagaaaatg tgccaacgat catggacaag ctacgccggc      1200
     gttttggaaa tcccgaggtt ctctcaacaa tgctggcgca acgagttcaa aagcttgaag      1260
     gaccagactc ggagaatttg gaatccttga ttgaatttgg tagtgcaatc gaagaattca      1320
     ctcagcatct atacgtgtcg aaactaaacg accacttgaa gaatccgatt ctaatgcaga      1380
     gcttagtaca aaaattaccc ccgtgttatg ctatgcagtg ggttgagtac aaacgacggt      1440
     cacgaatagt agatttgaaa acctttggga gtttcatgga ggatttggtg gataaggcgt      1500
     tggaagtaac cttcgaaaga atggatttag cagcaacgaa aaggcgtgaa aaaccgaaag      1560
     cgaaagtttt cacccatctg gtggaaggag ataacgaagc gagtggcatc caacaaaaca      1620
     ataaagttca gacaacagta gtacaagctt ccccgagacg agatattagt tgttcgattt      1680
     gcgatgaacc aggacatttt ggtcgagatt gtcgagaatt tcgttgtgca agtgtggaac      1740
     gaagatggat gatagtaaaa catttgggtc tgtgtgcgct ttgcgtttat aatcatggca      1800
     aatggccctg tagatcgaag attcgatgtg agattgatgg atgcaaaggt ttgcacaatc      1860
     cgttgttaca ccctccgatc agctcagaga ctgccaaaat ggaggctcat tgtaacagtc      1920
     atagttcaat gaacaaaacg gttttgtttc gcataattcc ggttacactt tatagtgaaa      1980
     gaaataaatt tgacacgctt gcgctggtag atgaaggatc gtcaacttca ctcatcgatg      2040
     gagaaattgc agagttcttg cagttaagtg gaccaagaga accgtttcaa atgcgctgga      2100
     cgaatggagt tagccgtacg gaaacgcaat caagaaatgt cgagatgaag atctcgggga      2160
     gaaattgtaa agctttcgac ttgtgcattg cgaggactgt taagaaatta gatctgcctg      2220
     ctcaaaagtt ggattcaagt cggcttattg aagaattcca tcatttcgga gatattcaaa      2280
     tcccaagcta cgacttagat tctccgaaac tcctgatcgg tatcgacaac atgcatctta      2340
     ttgctcctct ggcgtcacgt gttgggaaaa gaggagaacc tatcgctgtt gaatgcaagc      2400
     taggatggac gatttacgga cctcggccaa acatgatagc agatgtacat ttccttgggc      2460
     accacagatg cgtttgcgag gagtgcagta aggcagatca agaattaaac cagatgttgc      2520
     gggataattt taagcttgaa gcagttggag agtcacctat acggctcgaa tcaaaggagg      2580
     actgcgtagc tcgaaatatt cttgaacgaa ccattaagcg gattggcaac cgtttcgaga      2640
     ttggtttact ctggaaaaac ggtataccga gatttccgga aagttattca atggcgtgta      2700
     aaagattaac gaagctggaa gctcgactag aacgaaatcc aggcatccgt gaaagtcttc      2760
     agaaacaaat tgaagaatac gtaatgaaag gctatgctca caagattacg gatcaagaac      2820
     ttcaagaaac accacctgag cgatgttggt acctaccctt aaactatgtt gttaattcga      2880
     agaaacctgg aaaggtcaga acgatatggg atgctgctgc gaggacaaac ggcgtatcgt      2940
     tcaacgattc attactgaag ggacccgatt tggttgcgcc actgtctgga gtaatcaatg      3000
     gatttcgaga acgacaggtg gcctttggag gtgacatacg agagacgttt caccaaattc      3060
     tggtgcgaaa agaagatcga cagtctcagc gttttttgtt tcgatttgat atgaactttg      3120
     aaccagaaat tttcgtgatg gacgtggtca tcttcggggc gagctgttcc ccttgcttgg      3180
     cacaatatgt caaaaatatg aatgccagag aacatgtgca agagtatcca gaagctgctg      3240
     atgccataat acggaaacac tatgtcgatg actattttga tagtgttgat acagaaaacg      3300
     aagcgatagt acgagcgaag gctgttagaa aggtacacgc gaacgctggg ttcgaaatac      3360
     gcaattgggt gagcaattca tcgaaagtat tgaaagaact tggtgaagtg gagccgcagg      3420
     aagtgaagtt gcttgatatg agtgcttccg atacagagag agtccttggc ataatgtggc      3480
     gaccagatat cgattcgttc gtgttttcca ccgaattcag gagcgaactg caaccataca      3540
     tcaaggaagg agcatggccg acgaaacgaa tcgctcttcg ctgcgttatg agcatgttcg      3600
     acccgaaaca atttttggcg cctttgctta tccatggtcg tattttgatg cagaatttat      3660
     ggcgaagtgg catcggctgg gatgagaaat taggtgaaga acattatgat caatggttac      3720
     gatggacaag gttgcttcca ttgattgatg atatacagat tccccgttgt tatcttggag      3780
     agatgagttc tacggtgtat gatacagtgc agcttcatgt cttcgcggat gctggggaag      3840
     acgcttatgg atgcgtagcg tatttccggt ttacggatgg taaaaatgtg cactgtgcgt      3900
     ttgtggaagc aaaagccaaa gtggctcctt tacagtacct gtccattccg agaaaagagc      3960
     tagaggctgc tgtattagga gcaagagtaa tgaaagctat ttgcgaaagc cattcagtga      4020
     aaataaagaa atattttcta tggacggatt caaacgcagt tatatcgtgg gtgaaatcag      4080
     acgcaaggcg atataaaccc tttgtagctc acagaattgg cgaaatatta agcgtaacca      4140
     atccggagaa ttggcgctgg gttcctacta aagacaacgc tgctgatgat gtaacaaaat      4200
     gggggaatgc gacacaagtt tgttccgata atcgatggtt tcggggtcct gactttctgt      4260
     acagcgcaga agaagactgg ccggaacaaa agcataaatc cattgaagtt gaagaagagc      4320
     tacgagctag tgttttgttc catgacatcg tacttccaga tgtaattcta tccaggatag      4380
     agcatatttc aaagtggaaa gtacttgtac gaatggtggc aactatgtat cgtttcataa      4440
     cgaactgtcg acgtaagatc aagaaacaat caattgaagc tttaccatat tctaagaaag      4500
     gagctacaac cgtctcggct gaacaagttc ctttgcggca agaggaatat ttattagcag      4560
     aaaattattt atggcgcgta gcgcagggtg cagaatttgc cgatgaagtg aagacgttgt      4620
     tcaaaaacca agattctccc aagggtcaac cgagaatgat cgaaaagagc agtccgttgt      4680
     atcggctgtc cccattttta gatgaatgta atgttgtgcg aatggaagga cggacggtag      4740
     cggccgatta tgctgcattt gatgtacggt ttccagttat tctgccaaaa cagcatttga      4800
     ttgttgagaa gttagtggaa ttctaccatc aaaaatgtgg tcacggcagt cgagaaatgg      4860
     tagtgaatga ggtacttcag cggttctaca ttccaggact gaggtccttg gttgaaagag      4920
     tttcacgaca ttgcttatgg tgcaaggtac agaaagcaaa accagttgta cctagaatgg      4980
     cgccgcttcc cgcatctaga atggctgtaa gcgaacatcc tttctcatac gtcggtgtgg      5040
     attactttgg ccctatcgaa gtggtagtcg gacgaagacg agaaaaacgg tgggtcgcat      5100
     tattcacttg catgacagtt cgcgccatcc accttgagga agtctacagt ttaacaacgc      5160
     agtcatgtga aatggctatt cgtagatttg tgaaacgtcg aggaagcccc attgaaattt      5220
     tttccgataa tgggactaac tttgtcggcg caagcaaaga cttggaagca cagatacgaa      5280
     ccatcaatgt cgaatgcgct gatacgttta cgggagcgaa aactaaatgg acattcaatc      5340
     ctccctcagc tccacacatg ggaggcgtat gggaacgaat ggttcgatca gtcaaggcgg      5400
     caatgtctgt atttgcaaac ggagaaaggt taacagatga aattctgcag actactctgg      5460
     cagaagtaga gcacctgatc aactcacgcc cgttgaccta tgtttccaca aacgtacaag      5520
     aagataaaga agcacttaca cctaatcact ttctgacaag ctgccctttg atagagtgta      5580
     tgccgtcgag aaacgcaatg caattggggg atagactacg aaacagctat tgtcaagccc      5640
     aatatttagc ggaagagttg tggagtcgtt ggcagcgaga atatctacca ctgatgaatc      5700
     ggaggtcaaa gtggctcgaa gaaaggaaac cggttgctgt tggagattta gtgtatgttg      5760
     cggattcaga aaagcgaagg acctgggagc gtggagtgat cgaggaagtc ttcacaggag      5820
     atgatggacg aatacgttcg gcgatggtgc gtaccaaaac cggattgaag aggcgagcag      5880
     ttgcgaaact agcaatattg gaaatatgag tatagtatag taagcactgt gctgattaca      5940
     gtcaacaaca gggcttacgg gctggggaga                                       5970
//
ID   BEL-195_AA-LTR repbase;    DNA;    INV; 598 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-195_AA_;
KW   BEL-195_AA-I; BEL-195_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-598
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 882-882 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 598 BP; 203 A; 86 C; 126 G; 183 T; 0 other;
     tgttacgctg ggagataaag ggtttgttgc atggacgcga tccacatttt gcaaagtatg        60
     gctcaagatt gaaagaagga agaaatcaca ataacagcat tgtaaacaca gggcgctgac       120
     atgttgaatt cggattgcta tgaatagact attgtgattg ctatcggagt tgaattatta       180
     actatttttt gaattagatg ctattgagag tttactaaaa ttattgcatt ggaaatagta       240
     agtaaaaaga aaattattat caattgttta ttacataaat cacttacaat aggcgcagaa       300
     ttgccagcag agtgaagaca ataacgatag tgggtgttga ctgatagaac ttgccgtgag       360
     taattatgag taatattgaa tactggttgc taatggcgaa atgttgtaca ggattacgtt       420
     gtaggaaatt tggaatgttc gtgggctgaa tagctgaatt gaagactaga tttgtaagta       480
     acaacattat aaaaccccat atgaacctaa tcaaatataa ttttagtttt gagtgtgccc       540
     aaacaccgtt acatacttca aaagccgttt ttcaatatgc tgccccgaac tcctccca         598
//
ID   BEL-196_AA-I repbase;    DNA;    INV; 6372 BP.
XX
AC   supercont1.77;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-196_AA_;
KW   BEL-196_AA-LTR; BEL-196_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6372
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.77; Positions 1305704 1299333.
XX
CC   Positions [5245-5826] - Integrase core
CC   'CAATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5032..6255
FT                 /product="BEL-196_AA-I_3p"
FT                 /translation="MHPFPRLFVEYMHKKLQHAGGRTLLTVIREEFWPIDG
FT                 RRLVRSVVRNCFRCQRLNPAPAQQQIGQLPASRVTPSRPFSVVGIDYAGPF
FT                 YLKPIHKRAAPAKSYLCLFVCFSTKAVHLELVCELSTSAFLAALRRFISRR
FT                 GRPIHIHSDNGKNFEGAKNEIVQLFAMLAGTHHIDEINSFCASEGITWHLT
FT                 PPKAPHFGGLWESAVKVAKKHIYRVIGSSRYTYEDFSTLFAQIEAVMNSRP
FT                 LLPMTDDPNDLAALTPAHFLIGTSLMALPDPDLRRIPTSQLDHYWQLQHLM
FT                 QRFWTLWQQEYLQELQKDTKCYARNDDILPGRLVIILDEQQPTTRWPLGRI
FT                 VKLHPGTDNITRVVTLRTAKGVIKRPVTKVCILPFAPADSPAPNEITCPAD
FT                 QQSQCDDVSPNAAK"
FT   CDS           join(892..3063,3067..4557)
FT                 /product="BEL-196_AA-I_1p"
FT                 /translation="MTTAPEMATQQQLLFRRDTILASLGRAEAFVADYVAE
FT                 RDEAQLQLRISHIDNIWANLEAIQAQLEDCATSEEGRARHAGVRADYEPRL
FT                 FSIKASLISKLPTPTSSNARNPCSTNVHALSGIKLPTISLPEFDGDYQQWL
FT                 TFHDTFVALIHSNTEVLDIQKFHYLRAAVKGEAAQLIEAISISSANYNLAW
FT                 ETLKGRYSNEYLMKKRHLQALFDIPRMKKESATTLHGLVDEFERHTKILRQ
FT                 LGEPTDSWSSLLEHLLCTRLHDDTLKVWEDHASTVKDPNYSCLIEFLQRRI
FT                 RVLESISVNHHVPSGSASSTPLSKKQSPIAHLSSCSSTTSTSKRCLACNQT
FT                 HPLVRCFKFQRLPLSERLQIVNAKRLCLNCLKVDHSYRNCPSEMSCRHCNR
FT                 RHHTLLHTSTPDSTRRSTNGNTSVASTSSPTPVAQSSPSASSETSQNSLVT
FT                 AAELDPIVEASVPVQHNRENVFLLTVIVHIVDSFGQEHPARALLDSASQPN
FT                 LITERLASILRLRRSNVNITVQGAGKLSKPVRQSVYTEVRSRNQHFSCGVN
FT                 FLIMDKVTADLPSRNISTAGWNIPKDLVLADPSFNQSQPIDLVLGAKHFYS
FT                 FFPSAARLQLSENLPVLVDSVFGWIVAGSSSPFCPESSSNKSRPSSTTISM
FT                 VTLEESIERFWKNEELVMNNNYSVEERRCETLYQSTVSRNEEGRYIVRMPR
FT                 QPDFHAMIGSSKLNALRRFELLEKFERDSKLKTDYHAFMQEYIDLGHMREV
FT                 AESEKDPPVAYYLPHHPVFKDSSTTTKVRVVFDGSAKTSTGYSLNEALCVG
FT                 PVVQDDLLDIMMRFRTYKVAVVGDIAKMYRQVLLHPEDRPLVRIFFRFSPQ
FT                 SPIRTYELQTVTYGLAPSSFLATRTLHQLADDEGHKYPLGGPALRKNFYVD
FT                 DFIGGAQNVQEAIQLRLQMSELLAKGGFELRKWTSNELEVLRGLKDEQIGT
FT                 QSSLQFNPNETIKALGICWEPEADTLRFDSHISPCDEPPTKRSILSCISRL
FT                 FDPLGLIAPVIVKSKLLMQELWLLSCGWDDAVPDSVRQKWDGIRSELPTIS
FT                 TYRADRYAFLPNASVQLHAFSDASEVAYGACIYARCEDSDGRVRISLLASK
FT                 SRVAPLKRVSLPRLELSAAVLGAHLYERIRKSIHIEIAASYFWSDSAITLQ
FT                 WIRSPPNNWKTYVANRVSEIQHFTHGCAWNHVSGYQNPADLVSRGMAVIDF
FT                 VKSKLWRSGPD"
XX
SQ   Sequence 6372 BP; 1587 A; 1615 C; 1454 G; 1716 T; 0 other;
     taattttggt gccgtgacca ggattccgcc atcggatcat ctaaaaacga cctgggagcc        60
     gccatttcga cactgagcat tgttcgtcac tgcgacagcc attgtacccg gaggatagtt       120
     attttctcaa ggctcgatta tatcgggcag caggtaatta gctgtccgag tatgtttgct       180
     ggccgcacag gtgcccttta gattttactt ttcttgcatg tacactcttc gttgctctgc       240
     ggataccgcc aattcgactg gatttcgtca tttggccatt ctaccgggat cgtcaaacaa       300
     tcactcgcct gtcgccatag tgccatccgg cgccattctt ggaagttggc ggcttggctt       360
     ccccgtagct attattcctg cagaagcttc tggatgttgg cattgtttgc caagtgaata       420
     gctggacatt gacctcctgt tgccgccttt cgaagtcggc cattgccttt gatgctcttc       480
     tgttcctgtc agtgaatacc agtgctattg tgacatcatc aagcgtgacc gtacgaagtg       540
     atcccacacg gtatttttct gcgcttctgg attttatacg acgttgtcag tggctgctaa       600
     ggatttcttc gaagattttt ccatcccgtt tcgtcaattg tgattctcct atgggcctat       660
     tacggcaaat tggactgctt tcgacggctt ctggtattag ctgctccgct cccgatacgc       720
     attcggagga tttggtgctc gtctggtttt tgctgcattt attgattaat tcaaggcata       780
     ttactgcctt ggaacaggtg agtaccgttc caagtagcta ctttgtccca ccctcgggtc       840
     taccgtggtc ttattgttct cagattcact gactgctgca ttccataact gatgaccacc       900
     gcaccggaaa tggctacgca acagcaattg ctcttcagaa gggacacgat actggcatcg       960
     ctgggtcggg cagaggcttt tgttgctgac tacgtagctg agcgtgacga ggcgcaactt      1020
     cagttgagga ttagccacat cgacaacatt tgggccaatt tagaagcgat acaagcccaa      1080
     ctggaggact gtgctacgtc agaggaaggt agggcaaggc atgcaggtgt tcgtgcggat      1140
     tatgaaccgc gccttttctc aattaaagct agcttgatat cgaaattacc gactcctact      1200
     tcttcaaacg ctcgcaatcc ctgctccact aatgttcatg ctctctctgg aatcaaacta      1260
     ccaactattt cgttgcctga atttgatggg gactaccaac agtggctaac tttccatgat      1320
     acctttgtcg ctctgattca ctcgaatact gaggtgctgg acattcaaaa gtttcattat      1380
     ctgagggcag ctgttaaagg cgaggcagca cagttaattg aagcgatttc aatcagctcg      1440
     gcaaattata accttgcgtg ggaaactttg aaaggtcggt actccaacga gtatttgatg      1500
     aaaaagcgac atctgcaggc gctgtttgac attccacgaa tgaagaagga atctgctacg      1560
     acacttcacg gtttagtgga cgagttcgag agacacacaa agatactgcg ccagctaggg      1620
     gagcctactg attcctggag ctctcttctc gagcacctgc tttgtactcg acttcatgac      1680
     gacacgctca aggtatggga ggaccatgcg tcaacggtca aggatccaaa ttactcctgt      1740
     ctcatcgagt ttctgcaacg gaggatcagg gtactggagt ctatttctgt taatcaccac      1800
     gtgccatcgg gttccgcttc gtctacgcct ttgtcgaaga aacaatcacc gattgctcat      1860
     ctttcatcgt gctcttccac tactagtact tcgaaacgat gtctagcctg caaccaaacc      1920
     cacccattgg tcagatgttt taaatttcag cggcttccac tttctgaacg tctacagata      1980
     gttaatgcga agcgcctgtg ccttaactgc cttaaggttg accattctta ccgcaactgt      2040
     ccatcagaaa tgagctgcag gcattgcaat cggaggcacc acactcttct gcatacttcg      2100
     acacctgatt ccacccgtcg atctacgaac ggaaatactt cagtagcctc tacgtcttct      2160
     ccaacaccag tggctcaatc cagtccgtcg gcttcgtcag agacatccca gaattccctt      2220
     gtgactgcag cggagcttga tcccattgtt gaagccagtg tcccggtgca acataatcgg      2280
     gaaaacgtgt ttttgctgac cgtcattgta cacatcgttg attcgttcgg gcaggagcat      2340
     ccagcgcgcg ctctactaga cagcgcctcg caaccgaatc taatcacaga acggctggca      2400
     agtattcttc gcttgagacg cagcaatgtg aatattacag tccagggtgc tggtaaatta      2460
     tccaagccgg tgcgccagtc agtctacaca gaagttagat ccaggaatca acacttttca      2520
     tgcggtgtta acttcttgat aatggataaa gtcacggctg accttccatc aaggaatata      2580
     tccacagctg ggtggaatat cccaaaggat ctcgttctgg ccgatccatc gttcaaccaa      2640
     tcacagccaa ttgatcttgt tctcggagcc aagcattttt actccttttt ccctagcgcg      2700
     gcgcgcctgc agctgtccga aaatcttcca gttcttgtgg atagcgtatt tggctggatc      2760
     gtagctggtt cttcgtcacc tttttgtcct gaaagctcat cgaacaagtc tagacctagt      2820
     tcgactacaa tttctatggt gacgcttgaa gaaagcattg aacgtttttg gaagaatgag      2880
     gaactcgtca tgaacaacaa ctactccgta gaagaaaggc gatgcgaaac tctgtatcaa      2940
     tcaaccgttt ctcgaaatga agaaggtcgc tatattgtgc gcatgccacg tcaaccagat      3000
     ttccacgcaa tgatcggatc ctcaaaactg aatgcgttgc gacgattcga acttttggaa      3060
     aagtgattcg aacgagattc caagctcaag acggactacc atgctttcat gcaagaatac      3120
     atcgaccttg ggcatatgcg tgaggtggct gaaagcgaaa aggatccgcc cgtagcgtat      3180
     tacttgcctc accatccagt attcaaagac tctagtacga caactaaggt gcgagtcgta      3240
     ttcgatgggt cagcgaagac gtcgaccgga tactcgctca atgaggcact ttgtgtgggc      3300
     ccggtggtac aggacgacct tctcgacatt atgatgcgtt ttcgtacata caaggtggca      3360
     gttgtagggg atattgcaaa gatgtatcgt caggtattgc tgcacccgga agaccgacca      3420
     ttagttagaa tctttttccg cttctcaccg caatccccga ttcgaaccta tgaactgcaa      3480
     accgttactt acggcctagc accgtcttct tttcttgcga cacgcacact ccaccagctc      3540
     gcagacgatg aaggtcacaa gtaccctctt ggtggtccag cattgcgcaa gaatttctat      3600
     gtggacgact ttattggagg tgctcaaaat gttcaagaag caattcaact ccgtttacaa      3660
     atgagtgaac tattggccaa aggagggttc gagctacgca aatggacctc aaacgaatta      3720
     gaagtcttgc gtggcctgaa agatgaacaa attggaacgc agtcatcgct tcaatttaat      3780
     ccgaatgaaa ctattaaagc attaggaata tgctgggaac cagaagccga cacgctgcga      3840
     tttgactccc atatcagccc gtgtgacgaa ccaccaacaa agcgaagcat tctttcttgc      3900
     atttctcgtc tcttcgatcc ccttgggctc attgcaccgg taattgtgaa atccaaactt      3960
     ctcatgcaag agctttggct actttcttgt ggatgggacg acgcagtgcc agattccgtt      4020
     cgccaaaaat gggatggtat acgcagcgag cttcctacca tttcaaccta tcgagccgat      4080
     agatatgcgt ttttaccaaa cgctagtgtt caattgcatg ctttttccga tgcttcagaa      4140
     gttgcgtatg gtgcgtgcat ctatgctcga tgcgaggatt ctgacggtcg agttcgtata      4200
     agcctattgg cctcgaagtc tcgcgtagca cctctcaagc gtgtaagtct gccacgtctt      4260
     gagctaagcg ctgcggtgct aggtgctcac ctgtacgaga gaattcgaaa atccatacac      4320
     atcgagattg ctgcatcgta tttttggtca gactcagcca tcacgctgca atggatacga      4380
     tcccctccta acaactggaa aacctacgta gcgaaccgcg tctccgagat acagcatttt      4440
     actcatggtt gcgcatggaa tcacgtatcc ggctatcaaa accctgctga tttggtgtcc      4500
     cgagggatgg cggtaataga tttcgtcaag agcaagcttt ggcgtagcgg gcccgattga      4560
     ctagcctgcc cgaaggaaaa ctggccaagt tcaacccctc ctacagtacc cgaggaaaat      4620
     atcgaagctc gtattgtggc tgcaacgatc acgacgccgc caatcaaccc attattctta      4680
     cgctggtcct ccttttctcg tttatcgcat gtcgtcggat attgttttcg attcgctgat      4740
     aattgccgct acaaaactcg atcgcaatcg ttaagtctgt ctagactaag tagaattgcc      4800
     ctggatccta aggagttaca aagatcaaaa gccttcctga cccgtcttgc acaagaagac      4860
     tgcttctccg atgaactacg tgagttaaaa caagagcgta ctgtagcgaa acgatccccc      4920
     cttcgaaagt tgagcccatt tttagattct gagagagcgt tgagagtagg tggtcggtta      4980
     aatcattcgc ttctccccta tcaagctaag caccctgccc tacttcctaa gatgcatcca      5040
     tttccccgcc tctttgtgga atatatgcat aaaaagttgc aacacgccgg tggacgcacg      5100
     ctcctgacag tgatcagaga agaattttgg ccaatagatg gtcggagatt ggtacgcagc      5160
     gtagtacgga attgcttcag atgtcaacgt cttaatccag caccggctca gcaacaaatt      5220
     ggccaacttc cagcgtcacg agttacccca agtcgtcctt tcagtgttgt aggcattgat      5280
     tatgctggtc ccttctactt aaagccgatt cacaaacgag ccgcacctgc aaaatcgtat      5340
     ctctgcttgt ttgtgtgctt ttcgacaaag gcagtacatt tagagctagt ttgcgagctt      5400
     tccacttccg cctttttggc agcactccgt cgtttcattt cccgtcgagg tcgaccgata      5460
     cacatccact cggacaacgg gaaaaatttt gaaggagcca agaacgaaat tgtccagttg      5520
     tttgcaatgt tggcaggtac ccaccatatt gatgaaatca attccttttg cgcctcggaa      5580
     gggattactt ggcaccttac acctcctaaa gctcctcact tcggtggcct ctgggagtcc      5640
     gccgtgaagg tagcgaagaa gcacatctat cgagtgatag gctcgtctcg atatacgtac      5700
     gaggattttt ccacactttt tgcacagatt gaagccgtca tgaactccag gccactactc      5760
     ccgatgactg acgatcctaa cgatttagca gcactaactc cggcacattt cctgattggt      5820
     acgtcgctaa tggccctgcc cgacccagat ttgcgccgga ttccgactag tcagctggat      5880
     cattattggc aactacagca tctaatgcag cggttttgga ctctctggca gcaagaatat      5940
     ctccaagagc tgcaaaagga caccaaatgc tacgcccgga acgatgatat cctacccggt      6000
     agactcgtca ttattctgga tgaacagcag ccaaccacac gttggccact aggtcgcatc      6060
     gttaaactgc atccaggaac ggacaatatc acccgtgttg tcactctgcg caccgcaaaa      6120
     ggagttatca agcgtccggt aacaaaggtt tgcatccttc cgtttgcccc agcagattca      6180
     ccggctccaa acgaaatcac ttgcccagca gatcagcaaa gtcagtgcga tgatgtgtcg      6240
     ccaaatgcag ctaaatagat gtaaaatttc ctgtaaaatt agaattaaga tttatgttcc      6300
     tctgcgagta gtcttgtaac atttgttgtt gttgttgttt tgaaagttga atgtcattca      6360
     aggcggcggg ta                                                          6372
//
ID   BEL-196_AA-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   supercont1.77;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-196_AA_;
KW   BEL-196_AA-I; BEL-196_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-456
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.77; Positions 1299332 1298877.
XX
SQ   Sequence 456 BP; 139 A; 81 C; 106 G; 130 T; 0 other;
     tgatagaaac tagaatcagt tgctcaaaat atacatgcag tttgaccgcg gctcatggaa        60
     taaccgattc agtttgagct attttgtgtt ttcgcccggt ttttctggca actctgaacc       120
     cgatctgctt tgctcgtata cttctatata catgggatac ccactagccg acctctagca       180
     aatcaactgt aggacagtag gattagattg attttgatag ttgaagagtg tgcaagtaaa       240
     gtgacagaga agaaagtgaa agttgttttt tcttattgga ataaagtgga ctgtagaagt       300
     agtgttccat gtgtattact gttgttgcct gctgaagaga atcaacttac ctgttgctgc       360
     tgtgatctat ctgcacggag aaaaaaggga cctgaaaaga agcaaatcaa acacaacgta       420
     gggaaacgaa aatcggcctg gcggtaagat tcacca                                 456
//
ID   BEL-197_AA-I repbase;    DNA;    INV; 6107 BP.
XX
AC   supercont1.1408;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-197_AA_;
KW   BEL-197_AA-LTR; BEL-197_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1408; Positions   25245   19139.
XX
CC   Positions [5179-5727] - Integrase core
CC   'ACAGA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1757..3832
FT                 /product="BEL-197_AA-I_2p"
FT                 /translation="MLLSELVSKIPPSIRLDCGLHTQRIPDVTMKAFSDFV
FT                 SSIKAAACQVTMPYDSNSQDDMNRSGRKKEKSGYVNPHSAEVNIRDGASST
FT                 KPQRHHKPCLMCHRGDHKIRNCNQFSSLTITERWNLVSRIVTTHRSKPHGT
FT                 LFKILPVTLSHNGKSVSTFAFLDDGSNVTLLENSIANMLDLDGEESSLCLR
FT                 WTSNVTRKESVSKRVQVGISEGGGKTQHVLSQVQTVDYLSLPRQSLDYAEI
FT                 SSKFPHLRGLPIQSYTEAVPKILIGVDNARLKLLLNKRERRDEEPVAVKTR
FT                 LGWTIFGGRRATDKCAMVHVCDCSVDQRLHELVRDYFEMDQLGIMVTSILE
FT                 SEENRRARRILEDTTRCTESGRFETELLWKHGEVKFPESYAMAERILKCLE
FT                 RRLQSDPELRKNVEAQIDDYQEQGYAHKATDEELRSSDPNRVWYLPLGIVQ
FT                 NPHKPHKVRIVWDAAARVKGVSLSSMLLIGPDLLTPLMSVLCRFRQRQYAI
FT                 TGDIKQMFHQLRNKKEDRQSPRFLWRAKPESTPDVYVMDVATFGTTCSPCS
FT                 AQYAKNLNAAQYEAQYPEAARAITQNTYVDHYLDSRDTVEEASELAVQVRE
FT                 VHSKAGFEIRNWLSNDRKILQRIGVENSQDVCPAVKSFTAEKTTIAARFLG
FT                 MMWEPNEDLFVFTIQFHADLLPLLAGELVPSKRQVLRVVFLTL"
FT   CDS           5107..6108
FT                 /product="BEL-197_AA-I_1p"
FT                 /translation="MWCRVYKAMPDTPRMAPLPQPRVIPFVRPFTHTGIDY
FT                 FGPLLVKQRRSNVKRWVAIFTCLTVRAVHLEVVHSLTIQSCKMAIRRFVDK
FT                 RGAPQNIFSDNGTYFSGATRELAADIKSIHLAIAGTFTNAKTEWHFNPPSA
FT                 PHMGGVWERKVRSIKDAFKVLAHREKLDDEGLLAEASMIVNSRPLTFVPLE
FT                 FPGQEVLTPNSFLLMSSSGNNSSLLRIQKVSLRTNWGVMQHLLNQFWQSWI
FT                 KSYLPTIARRTKWFTDVRPLQEGDLVIIVDESVRNGWLRGRITRTYPGVDG
FT                 QIRKVDVHTGSGTFQRPTVKVALLDVLEDSKADDKLGLTGRG"
XX
SQ   Sequence 6107 BP; 1783 A; 1446 C; 1456 G; 1422 T; 0 other;
     aactcaaaat taacgagtca tgatgaatgc gtcgaatcct aacctcacta tgcaggaagg        60
     cataaatagt tccaaaagtt gcaaccgtcc ggatagcgca gaggacatag ttgcctgcga       120
     taaatgcaat tgttggtggc attttagctg tgccggtgtg caagcatcca tatgcgaccg       180
     cttgtggcgt tgtccaaact gttctacttt ctgtggtacc attatttccg agcactcgaa       240
     tgcttacagc gccagactac aattgaagca actcgaagag gccaaagcaa tggaagacaa       300
     aattcggaac gaacaagcag aaagagaacg agaattttta gcagcgaaac atcagctcga       360
     atcggagatc gaagcaaggc aatcggtggg tggcagcctt agaagccacg aaagtcatcg       420
     cagccgacgc agcagagtgg gaacttaggt gacagagcag gattttacta taggcaatcg       480
     agcgattgag aatcatccat cggaggctgg caaaacctct accccaatac ttacgggtca       540
     ggtaggaacc ggagctacga agaaaattct ccctccatct caactgaacg accaagctca       600
     gcaacaagaa aaccccaccg aggaccaaca ctcacgtgtg acccgctcaa atgagcaagc       660
     aaatccgctt ccacccaaca caccgctggg cctaccgaag cagttactcc caccaaccaa       720
     atccgctgga atactcgagt cgtgctccct tgaacccaac attccgttgt caggaccagt       780
     ggacacaata aatccgatga ctaccgcaaa agcggacgca gcccactgcg cagtattgtt       840
     gcagcatcct ccagccgacc caaaagatac gatggcgtca tcttatcctg cgtttccagc       900
     gccaccttca atgtattcgt taggcgcact ggcgcagcaa cttcctctaa aaacaccatc       960
     gaaactgccg caaaggaaca ccacgaagtc actcgctcct cagttgtcaa ctcctatgtt      1020
     tccaccaagc gaccctatgc aatggcggaa tccaccgcca cccacggtgg ccccatcgcg      1080
     ttcaacgata ccaaagtttg ttgctcccac gcaacctgac ataacggaac gtacagtgaa      1140
     ccgaccatgt agaacaagct cctcccttgc ttaatccttc ggctccagta atccgagaag      1200
     cttccgatga agaacacaga cccacattac gacacaggat gccgcaacaa ccgacttcac      1260
     aaaataacgc acggggcaat ccagcgtacc tatggtacca accaccgatg ccaccctact      1320
     ggcagcaaca gcactcggta cagggttcat tcggaggatt gataatggtg gatgtggtct      1380
     cgcgggaatt accaaagttt tccggggatc ctttagagtg gctcatgttt ttgagcgcat      1440
     ttgtatccac cacggtgatg tgtggaatac aaccggccga aaatctcgct ggttgcagaa      1500
     atatttggtc ggaaaggcac gggaaaaagt gcacagcatt ttgactctac cggaggcagt      1560
     tcctgaaata atcaaaacac tgcgtgagga atgttcccga ccagaccagc tggtttatgg      1620
     tttgatgagt aaaatcagaa atgcttcagc cccgaacgtt aataaattag acacgttagt      1680
     cacgttcgag cgtgaggtgc gaaatctcgt cacctacata gaagccgcca aattgtaagc      1740
     gcacctgtcc aaccccatgc ttctatcgga gctggtcagc aaaattcctc caagcattcg      1800
     attggattgt ggtttacaca cccagcgaat tcctgacgtt acgatgaagg cgttcagcga      1860
     tttcgtatca tcgattaagg cagctgcttg tcaagttacc atgccatacg attccaactc      1920
     tcaagatgac atgaatcgct ctggaaggaa aaaagagaaa agcgggtacg tcaatccaca      1980
     ttcagccgaa gtgaacatca gagatggtgc ctcgtccaca aaaccgcaga ggcatcataa      2040
     accatgccta atgtgtcatc gtggcgacca taagattaga aactgtaacc aatttagttc      2100
     cctgacgatt actgaacggt ggaatttagt atcacgaatc gtcaccactc accgcagcaa      2160
     gccacatggt actcttttta agatactacc cgtgacgttg tcgcataatg gaaaatcggt      2220
     ttcgacattc gcctttctag atgatggttc gaacgtcacg cttcttgaaa acagtatagc      2280
     gaacatgctc gacttggatg gagaagaaag ttcgctgtgt ctgcgatgga caagcaatgt      2340
     cactagaaaa gaatccgtat cgaaaagagt gcaagtcggc atatccgaag gtggcggaaa      2400
     aactcaacat gtgttgtcac aagtacaaac tgttgactat ctcagcctgc ctcgacagag      2460
     cttggactac gcagaaatta gtagcaaatt tccgcatcta cgtgggctac cgatccagag      2520
     ttatacggaa gcagttccaa agattctgat tggtgttgat aatgctcggt tgaagctact      2580
     cttgaacaag cgagagagac gagacgaaga gccagtggct gtcaaaacga gattgggttg      2640
     gacgatattc ggtggacggc gagcaaccga caaatgcgcg atggtgcacg tttgtgactg      2700
     ttctgtggat caacggcttc atgagctggt aagagattat tttgaaatgg atcagctggg      2760
     tataatggtc acttcaatac tggaatccga ggaaaacagg cgtgcacgac ggatcctgga      2820
     agatactact cggtgtacgg aatcaggtcg gtttgaaacc gaattattat ggaagcacgg      2880
     tgaggtgaaa tttcccgaaa gctatgcgat ggcggaacgg attctcaaat gtcttgaacg      2940
     tcggctacaa tcagatccag agcttcgaaa gaacgtggaa gctcagattg acgattatca      3000
     ggaacaaggg tatgctcaca aggccactga cgaagagctt cgaagctctg atccaaatcg      3060
     cgtgtggtat ttaccgctgg ggatcgttca aaatccacat aaaccccata aggtgcgcat      3120
     tgtatgggat gcggcagctc gcgtcaaagg agtttctttg agctccatgc tcttaatcgg      3180
     accggatttg ctgactccgc ttatgtcagt tctttgtcga ttccgccaaa gacagtatgc      3240
     tataacaggc gatataaagc agatgttcca tcagctacgg aataaaaagg aggacagaca      3300
     gtcgccgaga tttctgtggc gcgcaaaacc cgagtcaacc ccggatgtgt atgtcatgga      3360
     cgtggctaca ttcggaacca cctgttcacc gtgctcagcc caatatgcta aaaatttgaa      3420
     tgctgcccag tatgaagcac agtatccgga ggctgcacga gcaattacgc aaaacaccta      3480
     cgtggaccac tacttagaca gccgagacac cgttgaagaa gctagtgaat tggcagtaca      3540
     agttcgtgag gtccacagta aagccggatt cgaaatccgg aactggctct ccaatgaccg      3600
     gaagattctt cagcgaatcg gagttgaaaa tagccaagat gtctgcccag cagtaaaaag      3660
     cttcaccgca gaaaagacga cgattgcagc ccgcttcttg ggaatgatgt gggaaccgaa      3720
     tgaggaccta ttcgtgttta ccattcaatt tcatgcagat ttgcttcctc tacttgctgg      3780
     tgaacttgta ccttctaaac ggcaagtttt gcgtgtggtc tttttgaccc tctaggtctt      3840
     attgcttcat ttacggtcca tggaaaaaaa tacgtatcca gaatatctgg agatcaggcg      3900
     tcgaatggga tgatcccatt atcaacaagg acttcatgga ctggaaaagg tggataagtt      3960
     tattaccaga actagaacga gtgcacattt cgagatgtta cttcccaaac tacgagcgag      4020
     aaagctacgg ttcactacag ctacacgttt ttgtggacgc aagtgaactt acgtactgta      4080
     gtgtggcata ttttcgcata atcgaccgcg ggcaaccacg atgcgccctg gtagctgcaa      4140
     aagctaaagt aactcctctg cgaccacaat caattctccg aaacgagttg aatgcaggcg      4200
     taattggggt gcggctaatg aaaagcgtta tggacaatca ctcgctgcga attacaaagc      4260
     ggtattttca tactgattcc actgtattac tggcttggct gcgggctgat cttcgtaagt      4320
     atcgtccata tgtgcagttt aggactactg aaatcctggc ggagacatca ttagaagaat      4380
     ggcgctgggt acccacccgg ctaaacatcg caggcaacca aatggggcag cggtcccagt      4440
     tttgatggac ggagcaattg gtaccgcggg ccagatttcc tctggcaacc ggaatgcgaa      4500
     tggcctgtaa ggaaaggtat agtcgatgaa ccaatggaag aattgagaac aacgaacgta      4560
     caccgagaat cagcgacgac caacgtaatt gatttcagca agttttcacg ttggaaagat      4620
     ttggtcaaat ctctagccta tgtataccat ttcgtcaacc gttgttctaa gaaacaacgt      4680
     gttccaacga aatcccgcct tgtgacactg gtacgtcaag actacgtagc ggcagaaaat      4740
     ggattgtggc gaatagttca agtgaaagaa ttcggagagg agattgcagc attaaaaaat      4800
     ttgaagttac ctgcaaaaac aggttgcata atgaagtcca gtccattggc gaaactatct      4860
     gcattcctag atgaacataa tgttctgaga atggaaagta ggatcgaccc aaaagccgca      4920
     tattacccat acaattttcg aaatccaata attgtacctt aacaacatcg tgcctctgag      4980
     ctactgatac tccacttcca tggaagatat ggtcacgcca atgctgagat cgttataaac      5040
     aaactgcgac agatctacta tattcctaag atacgctcag tagtaaagaa ggtcatcaaa      5100
     cagtgtatgt ggtgtcgtgt atataaagca atgccggata ctccaagaat ggcaccgttg      5160
     ccacagccac gtgtaatacc atttgtgcgg ccatttacgc acacaggtat tgactatttc      5220
     ggaccacttc tagtgaagca gaggcgtagc aacgttaaaa gatgggttgc aatttttaca      5280
     tgccttaccg ttagggcggt gcatcttgaa gtggtgcatt cattgacaat ccagtcctgc      5340
     aagatggcca ttcggcgatt tgtcgataaa cggggagcac cgcagaacat tttcagtgac      5400
     aatggtacct attttagtgg agccaccaga gaactagctg ctgacataaa atcgattcat      5460
     ctggccattg cgggtacctt tactaacgct aaaacagaat ggcatttcaa cccaccatcc      5520
     gctccacaca tgggaggtgt gtgggaaaga aaagttcgct ctattaaaga tgccttcaag      5580
     gttctagcac atcgtgaaaa gttggacgat gaagggcttc ttgcagaagc ctcaatgatt      5640
     gtcaattcac gtcctcttac ctttgtgccg ttggaatttc ccggtcaaga agtattaacg      5700
     ccgaatagtt ttctattgat gagctccagt ggcaataaca gcagtcttct gcgtatccag      5760
     aaggtttcgt tgcgtaccaa ctggggagta atgcagcatc tgctcaacca attctggcaa      5820
     agctggataa aatcctatct ccctaccatc gcaagaagaa caaaatggtt cacagatgta      5880
     cgaccacttc aagaaggcga cctcgtgatt atcgtcgacg aaagtgtacg aaatggctgg      5940
     cttcgtgggc gaattaccag gacgtatcca ggtgtcgatg gacaaatacg caaggtagac      6000
     gtccataccg gctcaggaac atttcaacga ccaacggtta aagtggctct cttagatgtg      6060
     ctggaagata gtaaggccga cgacaagtta ggcctcacgg gtcgggg                    6107
//
ID   BEL-197_AA-LTR repbase;    DNA;    INV; 613 BP.
XX
AC   supercont1.1408;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-197_AA_;
KW   BEL-197_AA-I; BEL-197_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-613
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1408; Positions   19138   18526.
XX
SQ   Sequence 613 BP; 204 A; 106 C; 102 G; 201 T; 0 other;
     tgctgacgca caaagcgaat aggccctttg gataggtagg actgaacaga tccatactat        60
     aataacctga cagattgcat ttttctatag aggagaaaaa tagctcacac gtttttgcca       120
     caaactttgc aatataatta gtttttttcc ttattatttc aatataatta gccaataggc       180
     gatgaaattg ttagcttagt tgcttctaat attaaaataa cctcttgagc attatatcag       240
     gtaaatatcg ataacattga attcgttatg ttgatctaca tgtggtatac ttaacaaagt       300
     tttcaattat gtatctattt aggaagaatc acgtttattt ggaagatgag catatttcac       360
     tacccctacg aagttgtgat caggtgttaa ccgtgggtag cagtttgtat tggccaagca       420
     aaatgtctaa gaattacatt gaaatacaca ggtatctact acaagctgtc ctagcacata       480
     tttgaggtcg ctttctacta caccactgta aaactcaatt gtaagtacta ataatgttta       540
     aactacacat tattaacatg caataaaatt tcagtcgagt ctcgcttcgc tcagactacg       600
     gaaaagttta aca                                                          613
//
ID   BEL-198_AA-I repbase;    DNA;    INV; 5561 BP.
XX
AC   supercont1.1432;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-198_AA_;
KW   BEL-198_AA-LTR; BEL-198_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5561
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1432; Positions   74888   69328.
XX
CC   Positions [4569-5153] - Integrase core
CC   'GGCAC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..3621
FT                 /product="BEL-198_AA-I_1p"
FT                 /translation="MDKLIRERKSLEPRLKRISDTVDKIRPEEAEEVDIQI
FT                 ELDALSDVWAAFCSVHKKILDNSEDDEAYDDAVHRQGRFEACYRALKNRLL
FT                 KMLKVVKDRDGVVSQQIPPNDVIRQLADQQAEFLRLMSSNMAAGPSSSAVV
FT                 HSNAPASPLSDLKLPRMNMPIFSGNYLEWQSFYDLFDSLVHQNPSLKDSQK
FT                 LYFLKTNLAGEAASLISHLKIEDANYQSALQKLKSRYDKPREIANQHIKRF
FT                 LAQPALTSSSSQGLRSLHDVSDEVIRALKAMNREDRDTWLLFILSEKVDPD
FT                 TKHLWCQKMAEMDEANINLQCFLKFVESRSFALQAAQPSKPKISVPFKQPL
FT                 KAAPQNRGANAFVATNPPFCNVCNKQSHHLYQCGKFIHMNYEDRLAHVTRM
FT                 RLCNNCLKKHSGESYQSGTCRKCNLPHHTLLHPVSSFASSQPSTSSSVRAP
FT                 ANPGTAAQSLISALDSPTCLDASSVLLATVAINVLDCHGRPYACRAVLDCA
FT                 SQVSFISHDFCRQLGLKTSAANMDLEGISSTPAHADKCAEIIIASRCTDYR
FT                 TSVSCMVLERITKMLPCKPANIDDWPIPGSIHLADPLFHRPGKVEVLLGIE
FT                 LFFQLLEPGKIALSPDDSLPTLQNTKLGWVVAGRYHDSNTSIRSHASTCLL
FT                 TSTDDDLSQQLRKFWELEEYAPTSNHLTEEEQRCEQHFADHTIRDETGKFI
FT                 VRLPFLMDPNQLGESRLIAEKRFRHIERKLDRNPPLRSEYHAFIREYIDLG
FT                 HMSLVEDTTTASKSVYLPHHCVVKSTSSTTKCRVVFDASAKTTSGLSLNDV
FT                 LMCGPVVQDSLINILVRFRFPPIVLVGDAKQMYRMVWLHELDRDFLKILWR
FT                 WSKDDPIEEYRLNTVTFGTKSASYLATKCVQQLLNSYREQYPAAVEKAEKG
FT                 IYVDDVLIGADSEEEARLLRDQLIEMFGAGGFHLRKWASNSAAVLEGVPVA
FT                 DLEMKIPIEESGSCTIKALGMQWQPCSDEFQFSYQPTEILQPTKRSILSQI
FT                 ASLFDPLGLLAPIIVKAKLVMQRMWELKVAWDATPPGELTNDWLVLVQKFS
FT                 LLNSFQIPQRVIDMRNWTRLYTATATHLMWPWALASIFELWATTVVLRPIY
FT                 SALNRSWHLLATVERLHPGLNCVRQLFSHD"
FT   CDS           3471..5561
FT                 /product="BEL-198_AA-I_2p"
FT                 /translation="MGACIYIRAVGNDGSTSSHLLCAKSKLAPIGNGRTTT
FT                 PRLELCAAVILARLITNVRAALSTTIFYEVRAFSDSKVVLAWLAGGAARWK
FT                 TFVANRVAEISTHLPSINWTHVGTLHNPADLISRGAFPEQLHTNTLWWHGP
FT                 AWDPSESKNETVPNSDLDTIDRRHVDREQRTTVVVCFTVYENRFLDDMMGR
FT                 YYPDLKILLRVTARILRFGHPEFRDSTRLSPDEITSALRKYLQHTQQQNFS
FT                 GELSRLQKGLSVDRSSSLRQLNPFLDEHGLVRVGGRLQESDLSYDNKHPIV
FT                 LPRHSILTSLILLHEHQEHLHCGPQSLLAATRTRFWILRGSSAARKICRDC
FT                 VKCNLVQPARIHQQMGQLPADRLKPLPPFAITGVDYAGPVNIVGRRTRGAV
FT                 PSKGYISLFVCLGTRAVHLEAVSDLSAPSFLAALTRFTSRYGVPSKMYSDN
FT                 ATNFRAAARTLRELYQQIDATEHSDEVNDFFTDKQVQWLFIPARSPHHGGL
FT                 WEAGIKVAKTFLNKIGGNYNYTFEELSTLLAQVAACMNSRPISPISDDPAD
FT                 PQPLTPAHFLIGRPLDALPEVNHLEQQVSSLSRWKYVQRVAQDFRARWQSE
FT                 YVLSLQKLSKWQQSSPNIAEGDFVLLVDDNEKPQQWPLGRVQELFPGNDGH
FT                 VRVVAVKTAKGVFRRDVRKLRRFPLDNDEYVPGRHGVEIPTRNLVGGL"
XX
SQ   Sequence 5561 BP; 1403 A; 1489 C; 1341 G; 1328 T; 0 other;
     tatggtcctt cgagccggat cgcgaagtct tcgccgcgaa ccgcgtagtc tgtgaccgct        60
     agtgcccgta aattggcccc gtcgccgccg tatcggcccc gagtgcttct gccatttggc       120
     ataatagtgg tgcagaacaa agcagcaagt gaggattgtg tcggacagtg acttttgttg       180
     aacgacaagt gcgtgaaatc caccaggatg gataagctaa tccgcgaacg taaatcgctc       240
     gaaccaaggt tgaaacgtat ttcggatacg gtggacaaaa taaggccaga agaagccgaa       300
     gaagtcgata ttcaaatcga gctggacgct ttgagtgatg tgtgggctgc gttctgttca       360
     gtgcataaga agattctgga caatagtgaa gatgacgaag cttacgatga cgcagtgcac       420
     cgccaagggc gtttcgaagc atgctacaga gcattgaaga atcgtttatt gaaaatgcta       480
     aaggtagtga aagatcgtga tggtgtcgtt tctcagcaaa ttccgccgaa cgacgtcatc       540
     agacagctag ccgatcagca ggccgagttt cttcgactga tgtcttccaa tatggctgcc       600
     ggccctagtt cctcggccgt cgtgcacagc aacgctccag catctcctct ctcggatctc       660
     aagctgccta ggatgaatat gcccattttc agcgggaatt acctagagtg gcaatccttc       720
     tacgacttgt tcgacagctt ggtgcatcaa aatccgtcac tgaaggacag ccagaagctg       780
     tacttcctga aaaccaacct cgccggtgaa gctgcatctt tgatttccca cctgaaaatt       840
     gaagatgcca attatcaatc ggcactgcag aagctgaaat ccaggtatga caaaccacgt       900
     gagatcgcta atcaacacat caagcgattt ttagctcagc cagctctaac gtcatcctca       960
     tcacagggct tgcgatcgct tcatgacgtg tctgatgagg ttattcgggc cctcaaagcg      1020
     atgaataggg aagaccgcga cacgtggctt ctgttcatac tgagcgaaaa ggtggatccc      1080
     gataccaagc atttgtggtg ccagaagatg gccgaaatgg atgaggcgaa catcaacctc      1140
     cagtgcttcc tcaagttcgt cgagtcccgc agtttcgctc tccaagccgc tcaaccgagt      1200
     aagccgaaaa tcagtgtgcc cttcaagcaa cctttaaaag ctgcacctca aaaccgagga      1260
     gctaacgcat tcgtcgccac gaaccctccg ttttgcaacg tttgcaacaa gcaaagccat      1320
     catctctacc aatgtggtaa gttcattcac atgaactacg aagatcgact cgctcacgtc      1380
     actagaatga ggctgtgcaa caattgcctg aaaaaacatt ccggtgaaag ctaccaatca      1440
     ggtacgtgta ggaaatgcaa cttacctcac cataccttgc tgcacccggt ttcgtcattc      1500
     gcaagttcac aaccttcaac atcctcatca gtcagggccc ctgcaaatcc tggaactgca      1560
     gctcagtcct taatttcggc cctcgactca ccaacctgcc tcgatgcgtc aagcgtccta      1620
     ctagcaaccg ttgccatcaa tgtcttggac tgccatggtc ggccctacgc ctgtcgtgcc      1680
     gttctagatt gcgcgtcgca agtcagcttc atcagccatg atttttgccg acaacttggt      1740
     ctcaaaacat cagcagccaa catggatctc gaaggcattt cttccacccc agcacacgcc      1800
     gataaatgcg ccgaaatcat cattgcttct cgctgtacgg attatcgcac ctccgtatcg      1860
     tgcatggtgt tagaaagaat taccaaaatg cttccctgca agccagcgaa tatcgatgat      1920
     tggcctatac caggatcaat tcatctggcc gatccactct tccatcgccc gggtaaggta      1980
     gaagttttac tgggcattga attattcttt cagctgctcg agcctggcaa aatcgccctc      2040
     agtcccgacg acagcttgcc aacactacaa aacaccaagc tcggctgggt ggtcgctggt      2100
     cgttatcacg attcgaacac ttcgattaga tctcacgctt cgacctgcct cttgacttcc      2160
     accgacgacg atctctctca gcagttgcgt aagttttggg aactcgagga gtacgctcca      2220
     acgtcgaacc atctcaccga agaagagcaa cggtgcgaac aacactttgc tgaccacacc      2280
     attcgcgatg agacgggaaa atttattgtg cgtctcccat tcttgatgga tcccaatcag      2340
     ctaggtgagt cccgactaat tgcagagaaa cgctttcgcc atatagagag aaagcttgac      2400
     cggaacccac cgctcagaag tgagtaccat gcgttcatcc gggaatacat tgatcttggg      2460
     cacatgtcac tcgttgagga tactaccacc gcaagcaaat cagtttatct cccacaccat      2520
     tgcgtggtca aatcaacaag ttcgaccacc aaatgccgag tggtgttcga tgcgtcggca      2580
     aaaactacca gtggtctctc tctgaatgat gtgctgatgt gtggccccgt agttcaagac      2640
     tccctgatca atattttggt tcgatttcgc ttcccaccaa tcgttcttgt tggtgatgcg      2700
     aagcaaatgt atcgcatggt atggctgcat gagctcgatc gcgacttcct caaaattctg      2760
     tggaggtgga gcaaggatga tcctatagag gagtatcgtc taaataccgt tacctttggg      2820
     accaagagcg catcctattt agcgacgaaa tgcgtgcagc aacttttgaa ctcctatcga      2880
     gagcaatatc ctgcagccgt tgagaaggcg gaaaagggca tctacgtcga tgacgttctc      2940
     atcggcgcag actctgaaga agaagcaagg ttgttacgag atcagctcat tgaaatgttt      3000
     ggcgccggcg gattccacct ccggaaatgg gcttcgaaca gcgcggcagt attagaagga      3060
     gttcctgttg ctgacctgga aatgaaaatt ccgattgagg agagcggtag ctgtacaatc      3120
     aaggccctcg gaatgcagtg gcagccgtgc agtgacgagt tccagttctc ctaccaacca      3180
     accgagatcc ttcagcccac aaaacgcagc atcctatcgc agatcgctag tctcttcgac      3240
     cccctcggcc ttctagcacc aatcatagtg aaggcaaaat tggtgatgca gcgtatgtgg      3300
     gagctgaagg tggcctggga tgcaactccc cccggtgagt taaccaacga ttggttagtt      3360
     ttggtgcaaa agttctcgct tctcaactcg tttcagattc cccaacgtgt aatcgacatg      3420
     cgcaactgga ctcgtctcta cacggctact gcgacgcatc tgatgtggcc atgggcgctt      3480
     gcatctatat tcgagctgtg ggcaacgacg gtagtacttc gtcccatcta ctctgcgcta      3540
     aatcgaagct ggcacctatt ggcaacggta gaacgactac acccaggctt gaattgtgtg      3600
     cggcagttat tctcgcacga ttgatcacca acgtcagagc tgctctttcc acgacgatct      3660
     tctatgaggt gcgagcgttc tccgacagca aggttgtctt ggcatggctg gctggcggcg      3720
     ctgcgaggtg gaaaaccttc gtggctaatc gtgtcgcaga gatatccact caccttccgt      3780
     ccatcaactg gactcacgta ggtactcttc acaatccggc ggatttaatc tctcggggag      3840
     cctttcccga acagcttcac actaatactc tttggtggca tggaccagcc tgggatccat      3900
     ctgagagtaa aaacgaaaca gtaccaaaca gcgatttgga cactattgat cgacggcacg      3960
     tagacagaga gcaacgaacc acagtcgtgg tttgcttcac tgtgtatgag aatcgttttt      4020
     tggacgacat gatgggcagg tactacccgg atctcaaaat ccttctccga gtcacagctc      4080
     gcattcttcg ttttggacac cctgagttcc gagactctac ccggctctct ccagatgaaa      4140
     tcacatcggc tctgagaaag tacctgcagc acacacaaca acaaaatttc tccggggagc      4200
     tcagtcgatt gcagaaaggt cttagcgtcg atcgtagtag ttcgctacga caactcaatc      4260
     cattcctgga tgagcacggc ctcgtcaggg tgggcggcag gctccaagaa tcggatctca      4320
     gttacgacaa caagcatccg atcgtgctgc cccgacattc gatattgaca tcgttaattc      4380
     ttctgcatga gcaccaagag catctccact gtggccctca gtcgttatta gctgctacac      4440
     ggactcggtt ctggatacta cgcggcagca gtgccgcccg aaagatctgt cgtgattgtg      4500
     tgaaatgcaa tctagtccaa cctgctcgca ttcaccaaca aatgggacag ctacctgccg      4560
     acagattgaa gccactgcct ccgtttgcca tcacaggcgt tgattacgcc ggtccggtga      4620
     acatcgtcgg acgaagaaca cgtggagcag taccatcaaa aggatacatt tcgctgttcg      4680
     tttgcctggg aacacgagca gtgcacctag aagcagtatc ggatctaagt gccccttcgt      4740
     ttctcgctgc cctcacccgg ttcaccagtc ggtacggagt gcccagcaag atgtattccg      4800
     ataatgcgac gaatttccga gccgcagcta ggacactccg tgagctatac cagcaaattg      4860
     atgcaactga acacagcgat gaagtcaacg actttttcac cgacaaacag gttcaatggc      4920
     tcttcatacc cgctcgatct ccacatcacg gtgggctgtg ggaggctgga ataaaggtgg      4980
     cgaagacctt cctcaacaaa atcggaggta actataatta cacctttgaa gaattaagca      5040
     ctcttcttgc ccaggttgct gcgtgcatga actctcgtcc gatttctcca atttcggatg      5100
     accctgcgga tcctcagccg ctcacgcccg cccatttttt aatcggtcgc cccttggacg      5160
     ctttgcctga ggtcaaccat ctcgaacaac aagttagttc cttatcaagg tggaaatatg      5220
     ttcagcgagt cgcccaggat tttagagctc ggtggcagtc cgagtacgtt ctgtcactgc      5280
     agaagctatc aaaatggcaa caatcatccc ccaacattgc cgaaggtgat tttgtgctcc      5340
     tggttgacga caacgagaag cctcagcagt ggccgttggg ccgtgttcaa gagcttttcc      5400
     ccggaaatga tggacacgtc agagtggttg cggtcaagac agctaaggga gttttccgtc      5460
     gagacgtcag gaagcttaga cggttccctc tcgacaacga cgagtacgtt cctggaagac      5520
     atggagtgga aattcctact cgtaatttgg tgggcggatt a                          5561
//
ID   BEL-198_AA-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   supercont1.1432;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-198_AA_;
KW   BEL-198_AA-I; BEL-198_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-353
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1432; Positions   69327   68975.
XX
SQ   Sequence 353 BP; 86 A; 96 C; 66 G; 105 T; 0 other;
     tgttggcgca agaatgggga ccgctaccct actcgtagca ccagcaagcg atgcagataa        60
     ctttccccgc acgtgcggct gctaccacca agcaattgaa agcagcatcc aaaatttctg       120
     tatctctccc tttttcttaa attctccttt gtcatccttt tttgagcctt ctgcctattg       180
     aattgccgaa ttatataaac ccccaacatc agaagcaaaa tatagtagtt acgaattgaa       240
     ttgtaaaagc cacacgcgtt gtttgattcc gtcccgaatt cccgaaagtt ttgccggtag       300
     tttgtccgcc ttgtgacccg ttttcgcgcg cttttttgga cctcacgcta aca              353
//
ID   BEL-199_AA-I repbase;    DNA;    INV; 7651 BP.
XX
AC   AAGE02030545;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-199_AA_;
KW   BEL-199_AA-LTR; BEL-199_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7651
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02030545; Positions   17384    9734.
XX
CC   Positions [4453-5034] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..5157
FT                 /product="BEL-199_AA-I_1p"
FT                 /translation="MTEAKVFRFVDNKKGNCRLCEETDKKDNMVSCDDCDR
FT                 WFHLSCVNLLRRPTEEEKFLCRKCEYLENERVGLLNFKKKFDIANQLNESL
FT                 KLQQDVANRREGEINLSARRQALIKLPKFNGAARDWPKFISIFNDTTAEGQ
FT                 FTNLENLSRLEEALYGDAAKSVSNLMIGAANVPKILKRLEDVFGRPETIYQ
FT                 QLLHELIKTLNYAKVHIVDIAKALDDLVTTMETLNKPEFLRDYRLITDIVT
FT                 KLPFNLQITWTEALQRNTSQPTLQDLNKWLQAHAKTMRLLAAPTRKEHKTR
FT                 INVHNNSPKIQCNICKNDHQTYKCNVLKNLNVEQRQQRVQQLGLCYSCLNK
FT                 GHGSKFCRNKRECKINGCRGTHNRLLHKGEKPKENQDAAAEKSNHHSSKKS
FT                 TVLYQILPVTLQNGKQVLETFAFLDPGSSLTLLDKSAADKLGLQGRSEPLE
FT                 MTWTQNVSKETPSQRVQLWISGHKGKPYSMKDVRTIEDIELPKQTLDVQRM
FT                 KREFQYLADVPVQSYVNAKPLILIGMEHAHLLLTTERRIGDEDSPMAAKTK
FT                 LGWLIFGKVYRGEPSYSFCIRERESSDLKSFFEKFSSTEDFGVRAVEKLPK
FT                 SLADERADAIIKETINYENGHYSIGLLWKTDTVNFPPSYNNALKRLRMLEK
FT                 KLSKNADVKMWALNSFDGFIKKGYARKLSLEEVLENHPNTYYLPHFIVTNK
FT                 NKIPPKSRIVFDAAAAIQGVSFNSALLAGSDTVKPLFGVLLRFRENTIAVT
FT                 GDIQEMFQQVKIIKKDQHTQRYLWRQCEIDRSPDVYVMESMIFGSTCSPAC
FT                 AQAVKNHNARLFKKDFPKASEASEDNFYVDDYLDSFNEVEEAAEVVQGVIN
FT                 IQQHAGFHLRNFITNSHELAKTIPSERLQDSEIKLLENKEIPTDKVLGIYW
FT                 NTKMDLIVFQLKLDVLEKTMTKREVLSFVMSMYDPLGLISNFTVHGRIILQ
FT                 RWHKQSSDWDSHLPEELSALWDSWIKALNIASNTQVPRCMSLKNALIYELH
FT                 TFVDASEDAFAAVIYLRSVSEDKVNVDLVSAKARVAPIKMLTIPRLELQAA
FT                 VLGTRLLETVKKELRIKITKCFMWTDSEIVLAWINSQHRRYKIFVAHRVAE
FT                 ILETTTADQWKYVKSAQNPADKGTKIIDRTSIWQHGPSFLLDPEEFWPETQ
FT                 IEMKTDEELRNYVNIHQDIHPYSFIKDDYFSDWWRLVKQTNIIKKFTDWIR
FT                 NKSDFNRSIDYEDLKLVEDATFRKAQWDCYAEEVLSLRTGQAINQSSNLRQ
FT                 LNPALDEYGVLRARGRLESAMSLPKSARTPIILPYEHHISFLIVKSYHERY
FT                 LHQNDNVVIAAIHQKFWIVKLRALLKKVKKYCQECVIAKSKPMPPMMAPLP
FT                 DFRTEPFLYPFTNTGVDYFGPFEVAVNRSREKRWGVIFTCMSSRAVHIEMA
FT                 EKLDTDSFIVCLRNFQNRRGKIKHLFSDNGTNFVGADNELKGLVMDIDKRM
FT                 RNGDAAALAIKWTFNPPAASHFGGVWERLIKTIKLSLYKMLKQYGDRLPRP
FT                 AILRSALIQAEFILNSRPLTHVPVEDFDDEVMTPFHILIGRAGEYVPPYDS
FT                 TAVHLEKYHWKKVQIMANIFGTVGLKNTSQCY"
FT   CDS           5151..7538
FT                 /product="BEL-199_AA-I_2p"
FT                 /translation="MLLKRNKWTNKVEPIKVDDIVIITDDKAPPGSWLKCR
FT                 VISVRTAKDGQVRSAEIKTSKGIYERPAVKIAVLDIRKINKPDSLPKINSE
FT                 TGQQGQTFQDTMQLSNDKNLSTANVQGQQNNDKDERRTPHKRTLRNKNPCN
FT                 FISIMVFVYMFSMIFGFETKGLIAYDCANPEVNMTSYSLLDVASCVPQKTN
FT                 LTSSVISIQVLQRNVRSLTKVLQCKVIIRRSIRHCGTFSHTSDYQYGYSYI
FT                 VKEFNSEECRKVHALGIVSLTHDRQINELKLNTTTRGETLIVGSVTGNSCS
FT                 GGTYSTPFYTWTGALVYYEYEIALYDYIASIDLENDQIFLKNGLMCTYSIG
FT                 TCLDSEEGYLTWDVDLNQACETTEFEVIYEGVVNKTISLDGNIKQTHSVVY
FT                 STISDTQVFSIKTREETRICGYNGFTTDHPRILIIETDTIRSPFTRKASTG
FT                 KNLDLFTYFNSKITLVESYIGQSLNDIYNMVMAEMCKLDKVILETKLTLAR
FT                 LNPNEFVTSIMKRNGYTAVVAGEVLHVLECKPVYITPRFTDQCYQEIPVYY
FT                 NNATMFLAPVTRVLQTMGTEIDCTPLLPAKFKFGNRWYTTDGRLRETTAPT
FT                 KLSTDIVTSWTYTPLPNLMESGVYDSSSLDKMRNMIYEQGERRVASSVVYK
FT                 VLAGQHPNTQGFRFDALVSEKIIDGAINKYWKKLLSWSTWLGNITSTAIGV
FT                 YIIIRALKFTIDTIIHAQILYDIYGFSWHLIASFWDSLTNLLSHKNIRKET
FT                 LNVKRDENNRCSNENQVPQNDQNTTEVTELSDYRGRIYPKFDSAA"
XX
SQ   Sequence 7651 BP; 2652 A; 1282 C; 1586 G; 2131 T; 0 other;
     ttttggtggc tccagagagg aaaactagtt aactcattat cggaagtgtc gcgacgttga        60
     tggtgttgtc ggcgcccaaa gatcgacaag tgtacgggat ttatcgtgag tgaaattaga       120
     actccggcag taaatctgtc gttataaagt gaaaagtaaa agtgagaaac ctcataagtc       180
     gctgagccgc agatggttgc aagaagtgag aactgagaag agttctgaaa cgtgataaaa       240
     aaaaaaaaat tgacttctta agacgccgtg tcgcagaagt aaggaacaat ccagagtgcc       300
     caagcgaaat atagtgctag ttgttaaatc agaaacagtg atttaaagac aaagtaaata       360
     atgacagaag caaaagtgtt tagatttgtg gacaataaaa aaggaaattg ccgtttgtgt       420
     gaggagaccg ataagaaaga caacatggta tcctgcgacg attgtgatag gtggtttcac       480
     ctgtcatgtg tgaacctctt aagaaggcca acggaggagg agaaatttct ttgtcgaaag       540
     tgtgagtatc tggaaaacga aagagtgggc ttattgaatt tcaagaagaa gtttgatata       600
     gcaaatcaac tgaatgagtc gctgaagctt cagcaggatg tagcaaaccg ccgtgaagga       660
     gagatcaatc taagtgcaag aaggcaggcg ttaattaagc ttccaaaatt caatggcgca       720
     gctcgtgatt ggcccaaatt tattagtatt ttcaacgata ctaccgccga gggccaattc       780
     acaaatcttg aaaacttatc aagattagaa gaagctctgt atggcgacgc agccaagagc       840
     gtgtcaaatt taatgattgg ggctgcaaat gtacctaaaa tattgaaacg tcttgaggat       900
     gtttttggaa ggccggagac tatttatcaa caattattgc atgagttgat caagacttta       960
     aactatgcaa aggtacatat agttgatata gcaaaagcat tggacgatct agttacgaca      1020
     atggaaacat tgaataaacc ggagttctta cgcgattatc gattgataac cgatatcgtg      1080
     acaaagcttc cgttcaacct gcaaataaca tggacggaag cactgcaaag aaacacttcg      1140
     caaccaactt tgcaggattt gaacaaatgg ctgcaagcac acgctaagac aatgcgattg      1200
     ttagcagctc ccacgcgaaa ggaacataaa acaaggatca atgttcataa caattcgccc      1260
     aaaatacaat gcaacatttg taagaacgat caccaaactt acaaatgcaa tgtattaaaa      1320
     aatctcaatg ttgaacaaag acaacaacgc gttcaacaat tgggattatg ttattcgtgt      1380
     ctgaataaag ggcatggcag taagttctgc cggaacaaac gtgaatgcaa gattaacggt      1440
     tgtagaggaa cacacaatcg tctgctacac aaaggagaaa agccgaagga aaatcaagat      1500
     gctgccgctg aaaaatctaa tcatcatagc agtaaaaaat caacagtatt atatcagatt      1560
     ttacccgtca ccttgcaaaa tggaaagcaa gttctggaaa catttgcttt ccttgatccc      1620
     ggatcttcgt tgactctact ggacaaatca gccgcggata aacttggcct tcaaggacgt      1680
     tcggagccct tggagatgac gtggacacaa aacgtgtcga aggaaacgcc aagtcaaaga      1740
     gtgcagctat ggataagcgg tcacaaagga aaaccatatt caatgaagga cgtcaggact      1800
     attgaagaca tcgagctgcc aaaacaaacg ttagacgtac agcgcatgaa gcgggagttc      1860
     cagtatctag cagatgttcc agtacagagc tacgtcaacg ccaagccgtt gattttaatt      1920
     ggtatggaac acgcccacct gttattgaca actgagagaa ggattggcga cgaggactcc      1980
     ccgatggcag caaagacgaa actgggttgg ctgattttcg gcaaggtata cagaggtgag      2040
     ccatcatatt ccttttgcat tagagaacga gagagtagcg atttaaaatc attttttgaa      2100
     aaatttagtt caacggaaga ctttggtgtt agggcagtag aaaaattacc taaatcgctt      2160
     gcagatgaga gggctgatgc cataataaaa gaaacaatca attatgaaaa tgggcactac      2220
     tcgataggtt tgttgtggaa aaccgacact gtcaattttc ccccaagtta taataatgcc      2280
     cttaaacgtt taaggatgtt ggaaaaaaag ttaagtaaga acgcagatgt taaaatgtgg      2340
     gcactaaatt cattcgatgg atttattaaa aaaggatacg cccgaaaact tagcttagaa      2400
     gaagtgttag aaaatcatcc gaacacctat tatttacctc atttcattgt gacaaacaaa      2460
     aataaaatcc cgccgaaatc ccgaatcgtt tttgatgcag cagctgcgat tcaaggagtt      2520
     tcttttaatt ccgctttgct tgcgggttcg gatacagtaa aacctttatt cggtgtttta      2580
     ttgagattcc gtgagaatac aattgctgtc actggagaca ttcaagagat gtttcaacaa      2640
     gtgaaaataa ttaagaaaga tcagcataca caaagatatc tttggagaca atgtgagatt      2700
     gacagatctc cagatgtata tgttatggaa tctatgattt tcggttccac atgttcacct      2760
     gcttgtgcgc aagctgttaa aaatcataat gcacggcttt ttaaaaagga ttttccaaag      2820
     gcttctgagg cctcagaaga taatttctat gtagacgatt acttggacag cttcaatgag      2880
     gtggaagaag cagctgaagt cgttcaggga gttataaaca tacaacagca tgctggattc      2940
     catctgagaa attttatcac aaactcacac gagcttgcca aaactattcc ttcagaaagg      3000
     ctacaagatt cggaaattaa gttattagaa aataaagaaa ttccaactga taaagttttg      3060
     gggatctatt ggaatactaa aatggattta attgtatttc aactgaaact tgacgtattg      3120
     gaaaaaacaa tgacgaagag agaagttctt tctttcgtga tgagcatgta tgatccattg      3180
     ggattaattt ctaattttac agttcatggt aggattattt tgcaaagatg gcataaacaa      3240
     tcctctgatt gggatagtca cttgccagag gaattatctg ctttatggga ttcatggata      3300
     aaggctctta atattgcttc gaacacacag gttccaagat gtatgtcgtt gaaaaatgca      3360
     ttgatttatg aattgcatac ctttgtggat gcttctgaag acgcattcgc agcagttata      3420
     tatttgagaa gcgtgtctga agataaggtt aatgttgatt tagtttcagc caaggcaaga      3480
     gttgccccaa ttaaaatgtt aactatacca cgcttagaat tgcaagcagc ggtattggga      3540
     acaagattat tggagacagt aaagaaggaa ttacgcatta aaattactaa atgttttatg      3600
     tggacagaca gtgaaattgt tctagcttgg ataaacagtc aacataggcg atacaagatt      3660
     tttgtagctc atcgagttgc tgagattctg gaaacaacta cagctgatca gtggaaatat      3720
     gtcaaatctg ctcaaaaccc cgctgacaaa ggtacaaaaa ttattgatag aacatcaata      3780
     tggcaacatg gaccttcatt tttacttgat cctgaagaat tttggcctga aacccaaatt      3840
     gaaatgaaaa ctgatgagga attacgaaat tatgtaaaca ttcatcaaga catccatcct      3900
     tattcattta ttaaggatga ttatttctca gattggtggc gattggtaaa gcaaaccaat      3960
     ataataaaga agtttactga ttggattaga aacaaatccg atttcaaccg aagtattgat      4020
     tatgaagatt taaaattggt tgaagatgct acattcagaa aggctcagtg ggattgttat      4080
     gcagaggaag tgttatccct aaggacaggg caagcgatta atcagtcgag caatttacga      4140
     cagttaaatc ctgcacttga tgaatacggt gtactcagag caagaggtcg attggaatct      4200
     gcaatgagct tacctaaatc agcaagaacg cctattatat taccgtatga acatcatata      4260
     tcttttttga ttgtcaaatc gtatcatgaa agatatttgc atcaaaacga caatgttgta      4320
     atagcagcta ttcatcaaaa attttggatt gttaaattga gagcattact aaaaaaggtt      4380
     aaaaagtatt gccaagaatg tgtcattgcc aaatctaaac ctatgccacc catgatggca      4440
     cccttgccag attttcgaac agaaccattt ttgtatccat tcaccaacac aggagtggat      4500
     tattttggac cgtttgaagt cgcagtaaat cgttcgagag agaaacgttg gggtgtgatt      4560
     tttacttgca tgtcaagtag agcagtccat attgaaatgg ctgagaaatt agataccgat      4620
     tcgtttattg tttgcttgcg aaatttccaa aatagaagag gaaaaatcaa acatcttttt      4680
     agcgataacg gcactaactt tgtcggagct gataacgaat tgaaagggtt agtcatggat      4740
     atcgataaaa gaatgagaaa tggtgatgct gcagcattag ccataaaatg gactttcaat      4800
     ccaccagcag catcacattt cggtggtgtg tgggagagac tcattaaaac gattaagcta      4860
     tctctctaca aaatgcttaa gcaatatggt gatcgattac cacgtccagc aattttgaga      4920
     tctgcattaa ttcaagcaga atttattttg aattctcgtc cgttaaccca cgttcctgta      4980
     gaagattttg acgatgaagt aatgactcca tttcatattc ttattggaag agcaggagaa      5040
     tatgtaccac cttatgattc gacagcggta catttagaaa aatatcattg gaaaaaagtt      5100
     caaattatgg caaatatttt tgggaccgtt ggactaaaga atacctccca atgttattaa      5160
     aacgaaataa gtggaccaat aaagttgaac ctattaaagt tgatgacatt gtcataataa      5220
     ccgatgacaa agctccacct ggatcatggt tgaaatgtcg tgtaattagt gtgagaacag      5280
     caaaagatgg acaagtcagg tctgctgaga ttaaaacttc taaaggaatt tatgaacgac      5340
     cagcagttaa gatagctgtc ctagatattc gaaaaattaa caagccagat tcccttccga      5400
     aaataaatag tgaaactggt cagcaaggtc aaacctttca agacacgatg caactctcaa      5460
     atgataagaa tttgagtact gccaatgtcc agggtcaaca gaataatgat aaagatgagc      5520
     gcagaacacc ccacaaaaga actttgcgaa ataaaaaccc ttgtaatttt atatcgatta      5580
     tggtttttgt atacatgttt tcaatgattt ttggttttga aactaaaggt ttgatagcgt      5640
     atgactgcgc caatcctgaa gtgaatatga caagctattc tcttcttgat gttgcttcct      5700
     gtgttcccca aaaaactaat ctgacctcat cagtaatatc catacaagtc ctgcagcgaa      5760
     acgttagaag tctaactaag gttctacaat gtaaagttat aattcgaaga tctatacggc      5820
     attgtggtac attttcgcat acctcagatt accaatacgg atactcctat atagttaagg      5880
     aatttaattc cgaagaatgt aggaaagtac atgctttagg aattgtatca cttactcatg      5940
     atagacaaat taatgagcta aaattaaata ccacaacacg aggtgaaacg cttattgtag      6000
     gaagtgttac tggaaattct tgtagtggag gtacttacag tacacccttt tatacatgga      6060
     caggtgctct agtttactat gagtacgaga ttgcactata cgattatatt gcaagtattg      6120
     accttgaaaa tgatcagata tttctgaaaa atggcttaat gtgtacttat tcaattggaa      6180
     catgtctaga ttccgaagag ggttatctga cctgggacgt agatcttaac caagcctgtg      6240
     aaactactga atttgaggtc atttatgaag gagttgtgaa caagaccata agtttggatg      6300
     gtaacataaa gcaaacccat tcagtagttt atagcactat atcagatacg caagtatttt      6360
     cgataaaaac ccgagaagag actcgcattt gtggatacaa tggatttact accgaccatc      6420
     cgagaatttt aattattgaa accgacacta ttagatcacc atttacgaga aaggcatcca      6480
     caggaaaaaa tttagattta tttacgtatt tcaactcgaa aataactctt gttgaaagtt      6540
     acattggaca atctttaaat gatatttata atatggtaat ggctgaaatg tgtaagttgg      6600
     ataaggttat actggagact aagttaactt tagccagatt gaacccaaat gaatttgtaa      6660
     ctagtataat gaaaagaaat ggttacacag cagtggtcgc tggtgaagtt ttgcacgttt      6720
     tggagtgcaa gcctgtttac attacaccac gatttactga tcaatgctat caagagatac      6780
     ccgtctacta caacaatgcg accatgtttt tggcaccggt tacacgcgtt ttacaaacaa      6840
     tgggaactga aatagattgt acaccgttac tgcctgcaaa atttaagttt ggaaatagat      6900
     ggtatacaac agatggaaga ttacgagaaa ccactgctcc gactaaatta tcaactgata      6960
     ttgtaaccag ctggacatat acaccattac caaacttgat ggaaagtgga gtttatgatt      7020
     ctagcagtct agacaaaatg agaaacatga tatacgaaca aggtgaaaga cgtgtggcgt      7080
     cttctgttgt ctataaagta ttagctggcc aacatcctaa tactcaaggt tttagatttg      7140
     acgcattagt ttcggaaaag ataattgatg gtgcaataaa taaatattgg aaaaaattgt      7200
     tatcttggtc gacgtggttg ggtaatatta cgtcaacagc tattggcgtt tacataatca      7260
     tcagagcatt gaaatttacg attgatacaa ttatacatgc acaaatattg tatgatattt      7320
     acgggttcag ctggcatttg attgcttcgt tttgggactc tttaacgaat ttattgtcac      7380
     acaaaaatat acgaaaagaa accttgaatg taaaaagaga cgaaaataat aggtgttcaa      7440
     atgaaaatca ggttccacaa aatgatcaaa ataccactga agtcacagaa ttaagtgatt      7500
     atcgaggaag aatttatcca aaatttgatt cagcagctta aaataaggaa gaataattat      7560
     aataagcata aagctcagac gaaattacaa gttaaaacat cgcttatcga ctttttgtta      7620
     tgtaaatcca gtaggtttac ggggcgcgga a                                     7651
//
ID   BEL-199_AA-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   AAGE02030545;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-199_AA_;
KW   BEL-199_AA-I; BEL-199_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-518
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02030545; Positions    9733    9216.
XX
SQ   Sequence 518 BP; 178 A; 94 C; 108 G; 138 T; 0 other;
     tgatacgaac gcgctgttaa ttaaatcaat caatgtagtt acagtagacg gaattagcaa        60
     tcattatgta catgaatcat ttgtgcgtca ttgggctttt gaaaactact atcagcgcgc       120
     cgcatggcat tttattgtca ctttatgttt agtttatcat ccctacagta agggtacgta       180
     caaagtaagt aagcagacac gaataatcat taagaaaata aagacccaaa atcgataata       240
     atagagcgac ccaaagatgc ggtcgtaaat cttggcgacg gtgagtcgtt gatagttaag       300
     aaaatagaat tgcgataagc agactgagaa agtaaaattg ccgggtacag atgcaagtgc       360
     gtcatggcac agtaagaccc aggcagaaaa ttgtagtata taagacctta ggtaagaaat       420
     aaagttagtt cttagcttca tctcatgtga gtcggtcctt gaaatccgaa agcaccataa       480
     cacacttcct cttgtcaatg ttcggttcga cccaaaca                               518
//
ID   BEL-19B_AA-I repbase;    DNA;    INV; 5908 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.01, Created)
DT   05-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5908
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5908
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5908 BP; 1602 A; 1286 C; 1643 G; 1377 T; 0 other;
     attctttaga atttttcatc gcgagatccc ctaagatgag tcttcaggta gacaaggccg        60
     atgcagctgc atcaccttcg aattgcacga aatgcgatct tccagacagc gtggagaaca       120
     tggtagcatg cgacggttgt ggatcttggt atcactacag ctgcgcggag gtcgacgaga       180
     gtgtcgccga gctgccgtgg aagtgcgaat cgtgtgggat tatgaatcaa actccgattc       240
     cgacgaaaac acgaccgaag aaaggtgcgc aacgactcgt gatcccaggc ggtgcagaaa       300
     agcagccgaa atcgtccggc ggcagcaaga cgggttcacg gagaggtaaa aagtccgctg       360
     taggagacac cgtaagtgcc acttctagtg ctaaggctag gctcgcactt gagctagaga       420
     tgattgatga gcaggatcgg atgagagaag aggagttgca ggctgagtta gaaatgaaaa       480
     ataaaaagtt attgctagaa aagcagacta gagatcgaga gttagagtta gaagctagga       540
     agttagcaga ggagaaagct tttcagcaaa agcagttaga cgaggaagag aagaatcgta       600
     aagctctatt ggagatgaaa cggttgtcac tcgaggcgaa aaagagcatc gttcgtcaat       660
     tttcgcaaat cggtagtgaa gtgagcagct taagtggaag tgaagtgacg agttccgaag       720
     acaaggttcg aagttggttg cagaaatctg gcgagcagac agagggaaat ggacaatcca       780
     cgtcagcagc gaaaggtacc aataacgtcc tggagaattc gtcgaaggcg gtgttcagtg       840
     gaattcgtgg accgaatctg ggctcaacta ggacaacgaa gcactctatc gataagattc       900
     cacacaaact agaagctgaa gaggatgaag aagattccgt gtgtcacctg caaccacgac       960
     caacaagtag caaagcaggt catggtatag caagcggtgg tgctcacgat ccagaggaga      1020
     atggcccaac cagtcggtag ctagcagcgc ggcaagtaat gggaaaggat ctgccaacgt      1080
     tttccggaaa tcctgaagag tggcccatat ggataagcaa cttccagcgt tcaacagaga      1140
     cttgcggatt ctcactggac gaaaatctga tccgtctgca gcgtagcctc aagggaccag      1200
     caatggaaat ggtgcggtgc agactgctct cgcctgcaaa cgttccccac gtaatcaaag      1260
     tactgcaaat gcgttacggt cgtccagaaa tattgatacg ggcactcacc gaaaagattc      1320
     gacagctcgc ccctccaaag atggatgatt tggatagtat tgtagatttc gggctagcgg      1380
     ttgatagctt ggtcgaacac ctgaagaccg caaagcaaca agcacatcta acaaatccgt      1440
     cattgttgca cgacctggtc gcgaaacttc ccgtcgatta ccggctgaaa tggtcggcct      1500
     tcaagagttc cgtggcagtg gttaatctcg gaacgttcgg aagatttacg tcgtcgctgg      1560
     tggagttagc ctacgaggtt atggatgatc agcctactac aaagacaaaa ggagttatcc      1620
     aaaagcccaa ggatcgaagt tacgttcacg cgcacacgga aagttcttcg actgggccaa      1680
     gttcagcaaa cagttgttca tgcatttcag ccaacccggt gaagaagatc tgtcttgctt      1740
     gcaacaggaa tggacacaag gtggcagagt gtttcatctt taaagctatg agcattgacg      1800
     accggctcaa gatagttagc cagaatgatc tttgtaggac ttgcctgaac caacacggca      1860
     aatggccatg taagacgtgg aaaggatgcg gaatagaagg ttgtcggtta cgtcatcata      1920
     cgctgctgca taccgtcacg ccggcggtac cacatcttgt atccagtcag ttgaaacgtg      1980
     gaagttgtgg cccaattttc cgaattgtac cggtgacatt gttcggaaaa gatcatcaag      2040
     tcaacgtgtt cgcatttgtg gatgaaggtt cgcagacttc gcttgtggat gatgcggtag      2100
     ctgagcaact aggtgtcaca ggtccatctg ggacattaag tctgcaatgg acaggtaacg      2160
     taaccaggga tgaagtaaac tcacgcatca tacatatgga gatatccagc gaatcgtcaa      2220
     tgaatcgcta caagatagta ggagtgcgta cggtcggatg tctccggctg ccggcgcaat      2280
     ccttgtgcta caaagatttg gcagaaatat acccacatct ccgagcttta ccgatcaccg      2340
     actacgcaga tgtaacaccg aagctcctta ttggtcttga caacctgaaa ctcacgattc      2400
     cactgaagat tcgagaagga ggttggggtc aacccatggc agccaaatgt cgtttaggct      2460
     ggagcatcta cggctgttca cgatcagcta cggaatcggt tacctgtggg tttcacgttg      2520
     gaggatggac caattcggac ggtgagttga acaaaattgt ccgcgactat ataacgctgg      2580
     ataattccgg agtgcaacct ccaatatctc ctttagaatc ggaggaagat aagcgagcac      2640
     gacagctact ccagaccacc actcgcagaa ttggcaaccg tttcgagact ggtttgttgt      2700
     ggaagtggga caacgtgcag tttccagata gctatgggat ggcacttcgt cggttgctgt      2760
     cgttggagaa gaaacttaac aaggaaccgc aactttacga atgcgttcgg cgacaaatac      2820
     aggaatatga ggagaaaggc tacgctcatc gtgctactga agaagaactc tccaaaacca      2880
     attccgaaaa gagctggtat ttgccgttgg gagtagtcct gaaccctaaa aaaccccaca      2940
     aagttcggat tatttgggac gctgccgcaa aggtgaacgg aatatcgctc aattcggcgc      3000
     ttctgaaggg tccggattat cttgcttcat tgatagaagt gttttatcat ttccgtctct      3060
     atgcagtcgc attgacagga gacataaagg agatgtttca tcgccttctc atccggcagg      3120
     aggaccgcca atttcaacga tttctatggc gggatcgtaa ctcggatgaa gtaaatgtgt      3180
     tcgttatgga tgtggcgata tttggagcga catgttcccc aagttcggca cagtatgtca      3240
     agaacgtgaa tgctctggac ttcaaacgtg aatcttctcg ggcggcgact gcaatcgtcc      3300
     gctatcacta cgtcgacgat tatctcgata gctttcctac ggcagaagaa gcagtgaagg      3360
     tcgggactga cgttcgtcgt atacatgcgg caggtggatt tgaaatacgg aattttcttt      3420
     cgagaaaatg atcaacccgg agaaggagaa taatgtggag tctgtcctcg gtatgaagtg      3480
     gatcccaatc ggtgacaacc tcacctacac attcgtagta cgcgccgacc ttgagcatgc      3540
     gctgaataga gctcatgtgc cgaccaaacg acaagtgctg cgcgtggtca tgagcctgtt      3600
     tgatccgtta gggttgatca gctatttcgt gattcacggg aaaactttaa tgcaggatat      3660
     ttgggcttcc ggtgtagact gggatgaacc aattagcagc gaactctgcg aacaatggcg      3720
     acggtggaca gatcttctgc cacaactgaa ctccgttcga attcctcgtt tctatttctc      3780
     atcagcgggc tacgaaacct actcttctct ccaggttcac gtctttgtag atgctagtaa      3840
     atcggcgtat gctagcgttg tctatttccg agtagagtcg agaggaacaa cagcggtggc      3900
     attggtagcc agcaaagcaa aggtggcccc attgaagatg atgtccatcc ctcgattgga      3960
     acttcaagct gctgtattgg gcacccgatt gctcaatagt gtcatctcga tgcacaagct      4020
     tccagtcagt cgtcgcgttt tgtggacaga ttcccagacg gtcattgctt ggttgcgtgc      4080
     cgaccaccga cgatatcagc agttcgtagg cttccgtgtg gcagaaattc tatcgacgac      4140
     ggacgtgcag gagtggagga aaattgacac cgagctgaac gtagcggatc ttgccacaaa      4200
     atggggtaag ggaccgagtt ttgacgactc taacacctgg tttcgtggtc cggatttctt      4260
     attggcgccg gaaaatttat ggccaaagca ggaggtgaca tcgagtatca cggaagaaga      4320
     agttcgtatt gtaggcgtac acgtggagca acccgctccc ctgattgaag ttgggagatt      4380
     cggccgatgg gaaaagttgc ttcgtactac agcatacgtc cggcgatttg tcgataactt      4440
     gaagaggaag aaaaatggcg aacaactgga gtttggtgtg ttgaagcaaa aggaactggt      4500
     tcacgcggag atcatgctac atagtcaagc gcagcaagaa tactttgccg aagaaatcaa      4560
     gcaacttagt ggaaaggaga aagaaataca gcttcggtac tcggtggtat ccaagtctag      4620
     ccgtattttc aagttgtggc cgttcctgga tcaatttggg gtgctgcgga tgcgaggaag      4680
     gatcggtgcc gcgtcacacg ttccgtatgc agcaaaattt ccaacgattc taccacagca      4740
     gtcacggatc agctttctta ttgcggacaa gtttcatcgt cgtttccgtc atgctaatag      4800
     ggagacggtg attaacgaaa tgagacagga gttctatata ccgaagatgc gtgcgttggt      4860
     tgcaaaagtt gtgcatgact gcatgttctg tcgtgtgcgc agggctgtac cgcggccgcc      4920
     tccaatggcc ccactgccga atgctcggtt gacgccgttc gtgcggccat ttacgtttgt      4980
     cggcttggat tacttcgggc cggttttggt aaaggtggga cgcagcaacg ccaaacgctg      5040
     gattgcactc ttcacgtgct tgagtattcg ggcagttcac atggagattg ttcacagtct      5100
     gtcaacagaa tcctgtattc aagcagttcg aaggttcgta tcccgtcgag gttcgccggc      5160
     ggaaattttt agtgacaatg ggaccagctt tcatggcgcc aacaaccagc ttcggaagga      5220
     gatagaagat cgaaatacag cattagcgtc ggtgttcact aatacgaaca cccgttggtc      5280
     gttcaatcca ccgggtacac cccacatggg tggggtatgg gaaaggatgg tgcggtccgt      5340
     caaagaagcc atcaagtcaa cgctggaaac gtcgaggaag ccagacgatg aaacgttaga      5400
     aaccgtgatc atcgaagcgg aatgtatggt taatacgcgc ccactaacct atatcccttt      5460
     ggaatcggcg gaccaggagg cgcttacgcc gaaccacttc ttgttgggaa gttcttctgg      5520
     tgtaaagcag ttgtcagttc ttccaacaga ctaccgtacg acgttgagaa gtagttggaa      5580
     cttggcgaag catttggtcg acgaaatgtg gagacggtgg ttatcggagt atctgccggt      5640
     gatttcacgt cgttgcaaat ggttcgacca cgtgagggat ttgaaggaag gagatctagt      5700
     gctggtggtg aatggaagcg tgcgaaacca gtggattaga ggactagttg aacaagtcgt      5760
     gaagggaaag gatggacgag tgcggcaagc gtggatacgc acgagagctg gtgtcgatcg      5820
     caggttagta gccaacttgg ctttgctcga cgtcatggag aatggtgaac ataaccaagg      5880
     cgatggtagc ggttcacggg tgggggga                                         5908
//
ID   BEL-19B_AA-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.01, Created)
DT   05-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-502
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-502
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 170-170 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 502 BP; 178 A; 86 C; 91 G; 147 T; 0 other;
     tgtgacgacg aaacccgccc tgcgatggag atgccctaac ggccgacggt tctgtttgtt        60
     tttcactgct tcgtgatctg tcagcagcga tctgattacg attttgacga ggtaaaggca       120
     gaagaaaaat aacaagtgtc agcatagtgt gggcgatctt ccatcgtgcg tattgaacaa       180
     tttatagttt aaaaatttat tgattcctaa aaattgtgaa aaatcctact taatactact       240
     atttacaatt aaacgtaagt aaaaatgaat ttgttaacta atagatttat aaacccagaa       300
     atttattaat tgtagcctac ttaacctaaa acgtcgccta agacataaag ggaagaattt       360
     cgaggtgtaa aaggttactg aaaaattgta agtaggtaca caacataaac ctgtaaacac       420
     aaattacata tttaataatt acagctaaag cctatcctaa caaatactag cgtttggatt       480
     gctcttggaa tcggtgacaa ca                                                502
//
ID   BEL-19_AA-I repbase;    DNA;    INV; 5487 BP.
XX
AC   supercont1.314;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_AA_;
KW   BEL-19_AA-LTR; BEL-19_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5487
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.314; Positions  757908  763394.
XX
CC   Positions [4528-5100] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4273..5487
FT                 /product="BEL-19_AA-I_1p"
FT                 /translation="MTLTPGFAAKFPTILPQQSRISFLLADKFHRRFRHAN
FT                 RETVINEMRQEFYIPKMRTLVAKVAQDCMFCRVRRAVPRPPPMAPLPKVRL
FT                 TPFVRPFTFVGLDYFGPVLVKVGRSNAKRWIALFTCLSIRAVHMEVVHSLS
FT                 TESCIQAVRRFVSRRGSPAEIFSDNGTSFHGANNQLQKEIKDRNAALASVF
FT                 TNSNTRWSFNPPGTPHMGGVWERMVRSVKEAIKSTLESSRKPDDETLETVI
FT                 IEAESMINTRPLTYIPLESADQEALTPNHFLLGSSSGVKQLPVLPTDYRTT
FT                 LRSSWNLAKHLVDEMWRRWISEYLPVISRRCKWFDHVRDLKEGDLVLVVNG
FT                 NVRNQWIRGRVEHVVVGKDGRVRQAWIRTRAGVDRRSVANLALLDVMENGE
FT                 QDDGSGSREGG"
FT   CDS           join(36..2993,2997..4352)
FT                 /product="BEL-19_AA-I_2p"
FT                 /translation="MSLQVDKADAAASPANCTKCDLPDSAENMVACDGCGS
FT                 WYHYSCAEFDESVAELPWKCDSCGIMNQTPIPTKTRPKKGAQRLVIPGGAE
FT                 KQPKSSGGSKTGSRRGKKSAVGDNVSATSSAKARLALELQMIDEQDRMREE
FT                 ELQAELEMKNKKLMLERQTRDRELELEARKLAEEKAFQQKQLDEEEKNRKA
FT                 LLEMKRLSLEAKKSIVRQFSQIGSEVSSLSGSEVTSSEEKVRSWLQKSSEQ
FT                 TEGNGQSTSAAKGTNNVLENSSKAVFSGIRGPILGSTITTKHSIDKVPHEL
FT                 EAEKDEDDSACQIQPILTSSKAGHGIASGGVHDPEENGPTSRQLAARQVMG
FT                 KDLPTFSGNPEEWPIWISNFQRSTETCGFSLDENLIRLQRSLKGPAMEMVR
FT                 CRLLSPASVPHVIKVLQMRYGRPEILIRALTEKIRQLPPPKMDDLDSIVDF
FT                 GLAVDSLVEHLKTAKQQAHLTNPSLLHDLVAKLPVDYRLKWSAFKSSVAVV
FT                 NLGTFGRFTSSLVELAYEVMDDQPTTKTTKGVTQKPKNRSYVHAHTESSSP
FT                 GPSSANSCSCNANSVKKFCLACERDGHKVAECFIFKAMSIDDRLKIVSQNA
FT                 LCRTCLNQHGKWPCKTWKGCGIEGCRLRHHTLLHTVTPAVPHLVSSQLERG
FT                 ICCPIFRIVPVTLFGKDHRVNVFAFVDEGSQTSLVDDAVAEQLGVTGPSGT
FT                 LSLQWTGNVTRDEVNSRIIQMEISGKSSMNRYKIVGVRTVECLRLPAQSLC
FT                 YKDLAEIYPHLRGLPINDYADVTPKLLIGLDNLKLTIPLKIREGDWGQPMA
FT                 AKCRLGWSIYGCSRSATESVICGFHVGGWTNSESELNQIVRDYITLDNSGV
FT                 QPPISPLESEEDKRARLLLQSTTRRVGNRFETGLLWKWDNVQFPDSYGMAF
FT                 RRLRSLEKKLDKEPQLYECVRRQIQEYQEKGYAHRVTEEELSKTNSGKCWY
FT                 LPLGVVLNPKKPNKVRIIWDAAAKVNGISLNALLKGPDYLASLIEVFYHFR
FT                 LYAVALTGDIKEMFHRLLIRQEDRQFQRFLWRDRDSDEVNVYVMDVAIFGA
FT                 TCSPSSAQYVKNVNALEFESEYSRAVTAIVRYHYVDDYLDSFPTAEEAVKV
FT                 GTDVRRIHAAGGFEIRNFLSNDPAVAVCVGESSTSEEKMIKPEKEINVESV
FT                 LGMKWIPIGDNLTYTFVVRADLEHVLDKTHAPTKRQVLRVVMSLFDPLGLI
FT                 SYFVIHGKILMQEIWASGVNWDEPIGSELCEQWQRWTDLLPQLNSVRIPRC
FT                 YFPTANYQTYSSLQVHVFVDASKSAYASVVYFRVESIGGIAVTLVAGKAKV
FT                 APLKMMSIPRLELQAVVLGTRLLNSVIAMHKLPVSRRVLWTDSQTVIAWLR
FT                 ADHRRYQQFVGFRVAEILSTTDMQEWRKIDTELNVADMATKWGKGPSFDDS
FT                 NTWFRGKIPNDSTAAVSNQFSACG"
XX
SQ   Sequence 5487 BP; 1495 A; 1211 C; 1516 G; 1265 T; 0 other;
     attctttaga atttttcatc gcgagatccc ctaagatgag tcttcaggta gacaaggccg        60
     atgcagctgc atcacctgcg aattgcacaa aatgcgacct tccggacagc gcggagaaca       120
     tggtggcatg cgacggttgt gggtcttggt atcactacag ctgcgcggag ttcgacgaga       180
     gtgtcgccga gctgccgtgg aagtgcgatt cgtgtggaat tatgaatcaa accccgattc       240
     cgacgaaaac acgaccgaag aaaggtgcgc aacgactcgt gatcccgggc ggtgcagaga       300
     agcaaccgaa atcgtccggc ggcagcaaga cgggctcacg gagaggtaaa aagtccgctg       360
     taggagacaa cgtaagtgcc acttctagtg ctaaggctag gctcgcactt gagctacaga       420
     tgattgatga gcaggatcgg atgagagaag aggagttgca ggctgagtta gaaatgaaaa       480
     ataaaaagtt aatgctagaa aggcagacta gagatcgaga attagagtta gaagccagga       540
     agttagcaga ggagaaagct tttcagcaaa agcagttaga tgaggaagag aaaaatcgca       600
     aagctctgtt ggagatgaaa cggctgtcac tcgaagcgaa aaagagcatc gtccgtcaat       660
     tttcgcaaat cggtagtgaa gtgagcagct taagtggaag tgaagtgacg agttccgaag       720
     aaaaggttcg aagttggttg cagaaatcca gcgagcagac agagggaaac ggacaatcca       780
     cgtcagcagc gaagggtacc aacaacgtcc tggagaattc gtcaaaggcg gtgttcagtg       840
     gaattcgtgg accgattcta ggctcaacta taacaacgaa gcactcaatc gataaggttc       900
     cacacgaact agaagcggaa aaggatgaag acgattctgc gtgtcaaata caaccaatac       960
     taacaagcag caaggcaggt catggtattg caagcggtgg tgttcacgat ccagaggaga      1020
     atggcccaac cagtcggcag ctagcagcac ggcaagtcat gggaaaggat ctgccaacgt      1080
     tttccgggaa tcctgaagag tggcccatct ggataagcaa cttccagcgt tcaacagaga      1140
     cttgcggatt ctcactggac gaaaacctga tccgtctgca gcgtagtctc aagggaccag      1200
     caatggaaat ggtgcggtgc agactgctct cccctgctag cgttccccac gtaatcaaag      1260
     ttctgcaaat gcgttacggt cgaccagaaa tattgatacg ggcactcacg gaaaagattc      1320
     gacagctccc ccctccaaag atggatgatt tggatagtat agtagatttc gggctagcgg      1380
     ttgatagctt ggtcgaacac ctgaagaccg caaagcaaca agcacatctg acaaatccgt      1440
     cattgttgca cgacctggtc gcgaaacttc ctgtcgatta ccggctgaaa tggtcggcct      1500
     tcaagagttc tgtggcagtg gttaatctcg gaacgttcgg aagatttacg tcgtcgttgg      1560
     tggagttagc ctacgaggtt atggatgacc agcctactac gaagacaaca aagggagtta      1620
     cccaaaagcc caagaatcga agctacgttc acgcgcacac ggaaagttct tcgccagggc      1680
     caagttcagc gaacagttgt tcatgcaatg ccaactcggt gaagaagttc tgtcttgctt      1740
     gcgagaggga tggacacaag gtggcagagt gtttcatctt taaagctatg agcattgacg      1800
     accggctcaa gatagttagc cagaatgctc tttgtagaac ctgcctgaac caacatggca      1860
     aatggccttg taaaacgtgg aaaggatgcg gaatagaagg ttgtcggtta cgtcatcata      1920
     cgctgctgca caccgtcacg ccggcggtac cacatctagt atccagtcag ttggaacggg      1980
     gaatttgttg tccaattttc cgaattgtgc cagtgacgtt gtttggaaaa gatcatcgag      2040
     ttaatgtgtt cgcatttgtg gatgaaggtt cgcagacttc gcttgtggat gatgctgtag      2100
     cagagcaact aggtgtcaca ggtccatctg ggacattaag tctgcaatgg acaggtaacg      2160
     taaccaggga cgaagtaaac tcacgcatca tacagatgga gatatccggc aagtcgtcaa      2220
     tgaatcgcta caagatagtg ggtgtgcgta cggtggaatg tcttcggctg ccggcgcagt      2280
     ccttgtgcta caaagacttg gcagaaatat acccacatct ccgaggtttg ccaatcaacg      2340
     actacgcaga tgtaacaccg aagctcctta ttggtcttga caacctgaaa ctcacgattc      2400
     cactgaagat tcgagaagga gattggggcc aacccatggc agccaaatgt cgtttagggt      2460
     ggagcattta tggctgttca cgatcagcta cggaatcggt aatctgtggg tttcacgttg      2520
     gaggatggac caattcggag agtgagttga accaaattgt ccgtgattat ataacgctag      2580
     acaattccgg agtgcaacct ccaatatctc ctttggagtc ggaggaagat aagcgggcac      2640
     gactgctact ccagtccacc actcgcagag tcggcaaccg tttcgagact ggtttattgt      2700
     ggaagtggga caacgtgcaa tttccggata gctacgggat ggcatttcgt cgattgcggt      2760
     cgttggagaa gaagcttgat aaggaaccac aactttatga atgcgttcgg cgacaaatac      2820
     aggaatatca ggagaaggga tacgctcacc gtgtgactga agaagaactc tccaaaacca      2880
     attctgggaa gtgctggtat ttgccgttgg gagtagtcct gaaccctaaa aaacccaaca      2940
     aggttcggat tatttgggac gccgccgcaa aggtgaacgg tatatcgctc aattaggcgc      3000
     ttctcaaggg tccggattat cttgcttcgc taatagaagt attttatcat ttccgtctct      3060
     acgcagtcgc attgacagga gacataaagg agatgtttca tcgcctcctc atccggcagg      3120
     aggaccgcca attccaacga tttctatggc gggatcgtga ctccgatgaa gtaaatgtgt      3180
     acgttatgga tgtggcgata tttggtgcga catgttctcc aagttcggca caatatgtca      3240
     agaatgtgaa tgcactggag ttcgaaagtg aatattctcg cgcggtgact gcaatcgtcc      3300
     gttaccacta cgtcgacgat tatctcgaca gctttcctac ggcagaagaa gcagtaaagg      3360
     tggggactga cgttcggcgt atacacgcag caggtggatt tgaaatccgg aattttcttt      3420
     caaacgatcc ggcggtcgca gtgtgcgtag gagaaagctc cacatctgag gagaaaatga      3480
     tcaagccgga gaaagagatt aatgtagagt ctgtccttgg tatgaagtgg atcccaatcg      3540
     gtgataacct cacctacaca ttcgtagtac gcgccgacct tgagcatgtg ctggataaga      3600
     ctcatgcgcc aaccaaacga caagtgctgc gcgtggtcat gagtctgttt gatccgttag      3660
     gattgatcag ttatttcgtg attcacggaa aaattctgat gcaggagatt tgggcttccg      3720
     gcgttaactg ggatgaaccg attggcagcg aactttgcga acaatggcaa cggtggacag      3780
     atcttctgcc acaactgaac tccgttcgaa ttcctcgttg ctacttccca acagcgaact      3840
     accaaaccta ctcttctctc caggttcacg tcttcgtaga tgctagtaag tcagcatatg      3900
     ccagcgttgt ctatttccga gtagagtcga taggaggaat agcggtgaca ttggtagcag      3960
     gcaaagcaaa ggtagctcca ttgaagatga tgtccattcc tcgattggaa cttcaagctg      4020
     ttgtattggg cacccgattg ctcaacagtg tcatcgcgat gcacaagctt ccagtcagtc      4080
     gtcgcgtttt gtggacagat tcccagacgg taattgcttg gttgcgtgcc gaccaccgac      4140
     gatatcagca gttcgtaggc ttccgggttg cggaaattct ttcgacgacg gacatgcagg      4200
     aatggaggaa aatcgacact gagctaaacg tagcggatat ggccacaaaa tggggtaaag      4260
     gaccgagttt tgatgactct aacacctggt ttcgcggcaa aattcccaac gattctaccg      4320
     cagcagtctc gaatcagttt tctgcttgcg gataagtttc atcgtcgctt tcgtcatgct      4380
     aatagggaga ctgtcattaa cgaaatgaga caggagttct atataccgaa gatgcgtacg      4440
     ttggtggcaa aagttgcgca ggattgcatg ttctgtcgtg tgcgcagagc tgtaccgcgg      4500
     ccgcctccaa tggccccact gccgaaagtt cggttgacgc cgttcgtacg gccattcacg      4560
     ttcgtcggct tggattactt cgggccggtt ttggtgaaag ttggccgcag caatgccaaa      4620
     cgctggattg cactcttcac gtgcttgagt attcgggcag ttcacatgga ggttgtccat      4680
     agtttgtcaa cggaatcctg cattcaagca gtgcgcagat ttgtatctcg tcgaggatcg      4740
     ccggcggaaa ttttcagcga caatggtacc agctttcatg gcgccaacaa ccaattgcag      4800
     aaggagataa aagatcggaa tgccgcacta gcatcagtgt tcactaattc aaatacccgt      4860
     tggtcgttca atccaccggg cacacctcac atgggtgggg tatgggaaag gatggtccgg      4920
     tcagtcaagg aagccatcaa gtccacgctg gaatcgtcga ggaaaccaga tgacgaaacg      4980
     ctagagaccg tgatcatcga agcggaaagt atgattaata cgcgtccact tacctatatc      5040
     cctttggaat cggcggacca ggaggcacta acgccgaacc acttcttgtt gggaagctct      5100
     tctggtgtaa aacagttgcc agttcttcca acagactacc gtacgacgtt gagaagcagt      5160
     tggaacttgg cgaagcattt ggtcgatgaa atgtggagac ggtggatatc ggagtatctt      5220
     ccggtgattt cacgccgttg caaatggttc gaccacgtga gggatttgaa ggaaggagac      5280
     cttgtgctgg tggttaatgg aaacgtgcgg aaccagtgga ttagaggacg agttgaacac      5340
     gtcgtagtgg gaaaagatgg acgagtgcgg caagcatgga tacgcacgag agctggagtc      5400
     gatcgcaggt cggtagcaaa cttggctcta ctcgacgtca tggagaacgg tgaacaagac      5460
     gatggtagcg gttcacggga gggggga                                          5487
//
ID   BEL-19_AA-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   supercont1.314;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_AA_;
KW   BEL-19_AA-I; BEL-19_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-510
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.314; Positions  757398  757907.
XX
SQ   Sequence 510 BP; 198 A; 80 C; 101 G; 131 T; 0 other;
     tgtgacgacg aaatcctccc cgcgatggag atggtctaac ggccgacagc tccgtttgtt        60
     tcaagtggtc gaaatctgtc agcggttgcg atccgatgat gaatggaaac gaaaacgagg       120
     ataaacaaaa acagcgtagt ggtagcatag tgtgcatagc tttcaacgag cgaattaagc       180
     gaagttttca aagtaaaaac gtttatttca atcataaata tctttataaa cataacttaa       240
     tactactatt tgcaattaaa agtaagtaac aatgaattta ttagcgaata gaaacataaa       300
     aaatggaaat ttgtagccta cttaacctaa acgttgccta agactaagag ggaagaattt       360
     cgaggtgcaa aggttactga aaaattgtaa gtagagaaaa taagtaatgt agtaacgtaa       420
     gaacataaac taaacaataa ataattacag ctaaagccta tcctaacaaa cactatagcg       480
     tttggattgc tattggaatc ggtgacaaca                                        510
//
ID   BEL-19_AnFu-I repbase;    DNA;    INV; 5560 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5560
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 671-671 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..5511
FT                 /product="BEL-19_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MANDKQIKQAKKKLRDLMDHMKDLLDFVTNFDATKHA
FT                 VQIASRLEDLEETKMAFRSSRDTLLQNSEESEMIESLSHDRREFDTMYHTV
FT                 KGFLFANRSEEVHRREPQANSTFASSFNSSQSKLRLPKIELPTFDGNTTNW
FT                 LTFKDRFESLVHNVVDVPDVLKLQYLLSALKGDWAKQYDHTQLTADNYEPT
FT                 WDSLLKRFDQEKRIKREYFKAFAALEAMKDNSADELQRVVNESKRLVKGME
FT                 RLGEPTTLWNTPLTSLLYYKLDGDTLMAWEEYSADDKADIYTALMEFLEKR
FT                 IRILNSSKLCNDGSHGRKAPIPTNTNKVNKTNARGVSMVAGLPLRNRQSNG
FT                 DVASSSPPLTSTRPCEVCTENHRLWQCGKFVNMPLADRKRVVKEKGLCFNC
FT                 LNKNHMLINCRSPIRCQRCRKRHHTKLCDMEATVNTDATTISAVTKTETTM
FT                 KASLLATAQIWVTNSNGESILARAILDPGSQLNIISERVTQLLKLTKRRCN
FT                 TSLSGIGQTPVASKGVTTCTIRSRVSEYESTADFLVIPKITINIPTRNLST
FT                 DNWKIPAELQLADPEFHEAKGIDVLLGSELFVEVLQDGRVDLAPELPTMLN
FT                 TKIGWVWMGKCPQNNTTVTCYSIVESAMDELFERFVSLEEIPEETLQKDEL
FT                 ECNRLYNETTRYLEAERRYVVKLPKVSNMDRQLGQSKAIALRRFLSIERKM
FT                 QGDNNLAQEYKRFMYEYEHLGHMTRVCTYDQLEQSSQHLTYYLPHHAVWKS
FT                 DSTTTKCRVVFDASCKTDSGKSLNDLLLVGPVLQEDIVSIFIRFRLQPVVL
FT                 VADVEKMYRQVWVDEGDRSLQRILWRADPGVPVEVFQLNTITYGTASAPYL
FT                 AVRTLQRIFEDHGNLFPRACVCRTDFYVDDLLTGASTEQEAREMRVQLEAL
FT                 LAMGGFKLRKWASNRPTVLQGVAKEDLALSEEHLFDNESNTIGTLGMSWIP
FT                 DTDRISIRIRAPDNSESLTKRNVCRNIARIYDPLGLLDPVKMIAKIFLQRL
FT                 WMWRKEDQSSLGWDEELPQHFQRDWNNYVEQLSKLADVSVPRFVSSASYVE
FT                 LQLHIFCDASERGYGACSYIRVETGDGEISAMLLISKSKVAPIAKRQTLAR
FT                 LELCAAVLGSRLYGFIKDAIRVNLRCFLWTDSMTVRHWINASPNRWKTFVA
FT                 NRVAKIQRHTRECSWRHVPGNQNPADAVSRGCLPQELTNTWWNGPSWLVNK
FT                 EDFWPSQAELRNDTLIEDEKRVVLITRREEESFSEQLFSRYSSYSKLRRVV
FT                 SYCIRFINRCLGRQRSTDREIVEESKWLTTSELEAAERAICRMAQRDAFTE
FT                 EFNTLAKNNRVLQSSSLKYLHPFIGTDALIRVGGRLGNADVSRSEQFPIVV
FT                 PRNHALAELLANYYHLRLLHAGPQLMLCEIRQRFWILGARALIRRTYHQCI
FT                 RCFRCNPKPVSQPVAPLPVARVSPSKPFSVTGVDYCGPIYTRLNRRAVARK
FT                 AYIAIFVCFSTRALHIELVSDLTTEAFIAALRRFIARRGEVTEIHSDNGTN
FT                 FKGAANQLHEVHTLLKSEEHKSRVHHWCLNHAIRWRFIPPRAPNFGGLWEA
FT                 AVKSTKYHFVRVVGETKLTFEEASTLLAEIECILNSRPITALSNDPEGFEA
FT                 LTPGHFLMGNQPRILEEVDRTEVATNRLSRWQLVSKLSQQFWKRWHREYLQ
FT                 TLLPKGGKQNKHTILQKDMLVLIAEENCSPTRWPLARIVELHKGTDDIVRV
FT                 ITVKTQRGLFKRPVSRICILPEQNSL"
XX
SQ   Sequence 5560 BP; 1736 A; 1115 C; 1354 G; 1355 T; 0 other;
     taaattggtc cttcgaaccg gattttcacg aaaggtgttt gaagtaacat caaggcgtgt        60
     catcacgata tcgtgagaaa ggaacagtga gattcgcaac tcaagctatt taggctcgcc       120
     gtggattaag ttgggccaag cggtgcgatt aagtgttagt gccaaagcgt cagaacatcg       180
     ccattgcaag ggtgaataac cgaaagggac gctacaacga gaacgtgcac cgtcattgtc       240
     atatcgtgta aagtgtttga gtgtgtcgtc attatggcca atgataagca gatcaaacaa       300
     gccaagaaaa agctgcgtga cttaatggac cacatgaagg atttgctgga ttttgtgacc       360
     aacttcgacg ctactaagca tgcggtacag atcgccagcc gactggagga tttagaagaa       420
     acgaagatgg cgtttcgatc gtcgcgagat acgttgctgc agaacagtga agagagtgaa       480
     atgatcgaat cgctgtccca tgatcgccgc gagtttgata caatgtacca tacggtaaag       540
     ggatttctct ttgccaaccg ttcagaagaa gtgcatcgac gtgagccgca agccaacagt       600
     acatttgctt catcatttaa ttcctcgcag tcaaagttgc gcttaccgaa aatagagctg       660
     cctactttcg acggtaacac aacaaattgg ctgactttta aggaccggtt tgaatcattg       720
     gtgcataatg tggttgatgt gccggacgtg ctaaagctgc aatacttgtt atcggcactt       780
     aaaggagatt gggctaagca atacgatcac acacaattaa cagcagataa ctacgagcct       840
     acgtgggatt ctctcttaaa acggtttgat caagagaaga ggatcaagag agaatatttc       900
     aaggcgttcg ctgcgttgga agcaatgaag gacaactcgg ctgatgagtt gcaacgcgtg       960
     gtgaacgaga gcaaacgatt agtgaaagga atggagagat taggagagcc gactacatta      1020
     tggaatacgc cgttaaccag cttgctgtac tacaaattgg acggagatac actcatggct      1080
     tgggaggaat attctgccga tgataaggcc gatatataca ctgcattaat ggagtttttg      1140
     gagaaaagaa taagaatctt aaattcgtca aagctttgta atgacggttc gcatggaaga      1200
     aaggctccaa taccaaccaa taccaacaag gtgaataaga ccaatgcaag gggtgtgtct      1260
     atggtggccg gccttccttt gagaaacaga caaagtaacg gtgacgtcgc gtctagttca      1320
     cctcctctaa ctagtacgcg accatgtgag gtatgtacag aaaaccatag actgtggcaa      1380
     tgtggaaaat ttgtaaatat gccattagcg gaccgaaaac gggtagtaaa agagaagggc      1440
     ttgtgtttta attgcctaaa taaaaatcac atgctaatta attgtagatc cccgataaga      1500
     tgccaacgat gtaggaaaag acatcacaca aagctatgtg atatggaagc cacagtaaac      1560
     accgacgcaa caacaatatc agccgtcact aaaacagaaa caacaatgaa ggcatcacta      1620
     ctggctacgg cgcagatttg ggtaacgaac tcgaacggtg agtcaatttt agccagggca      1680
     atactggacc cgggatcaca attgaacatt atatcggaac gtgtaacaca gctgctaaaa      1740
     ctaacgaaaa gaagatgcaa cacttcgtta tcaggcatag gtcaaactcc agttgcatct      1800
     aaaggcgtaa caacttgcac cattcgctca cgagtgtcag agtatgaaag tacagctgat      1860
     tttttggtca tcccaaaaat aacgataaac attcccaccc gaaatctctc caccgacaat      1920
     tggaagattc ctgcggaatt acaactggca gatcccgaat ttcatgaggc caagggaatc      1980
     gatgtattgt tggggtcaga actattcgtg gaggtgttgc aagatggtcg tgtagattta      2040
     gctccagagc tccccacaat gcttaacaca aagattggtt gggtttggat gggaaagtgc      2100
     ccacaaaaca atacaactgt tacttgctac agcatagtag aatcagcaat ggatgaatta      2160
     ttcgaacgat tcgtatcttt agaggagatt cctgaggaaa cgttgcaaaa ggatgagctt      2220
     gagtgcaata gattgtataa tgaaaccaca agatatttgg aagctgaacg gagatatgtc      2280
     gttaaactac caaaggtttc aaacatggat cggcagcttg gacaatctaa ggcgatagct      2340
     ttgaggcgct ttcttagcat tgaacgaaaa atgcagggcg ataacaatct ggctcaggaa      2400
     tataaaagat ttatgtacga atacgagcat ctagggcata tgacacgtgt atgtacatat      2460
     gaccaacttg agcagagttc gcaacatctg acatattact tgcctcatca cgcggtttgg      2520
     aaatcagaca gcaccactac caagtgtaga gtcgtcttcg acgcgtcttg taagaccgac      2580
     tctgggaagt cactaaatga tctgctgctt gttggacctg tattacaaga ggatatcgtt      2640
     tcgatattca tacggtttcg gttacagcca gttgtattgg tcgcggatgt agaaaagatg      2700
     tataggcagg tttgggtaga tgaaggcgat cgatcactac agcgtatact atggagagct      2760
     gatcctggag taccagtaga agtctttcag ctaaacacaa ttacctatgg gaccgcttca      2820
     gccccgtacc tggctgttag aactctgcaa cgtatctttg aagatcatgg aaatctattt      2880
     ccaagggcat gtgtctgcag gacagatttc tacgtggacg atttactgac gggggcaagc      2940
     accgagcaag aagcgcgaga aatgagagtt caattagaag cgttattagc gatgggcgga      3000
     tttaaactgc gaaagtgggc ttcaaatcga ccaacagtac tacaaggcgt ggcgaaagaa      3060
     gatttggcgt tgtcagaaga gcatttattt gacaacgaat caaacaccat tggcacacta      3120
     ggcatgagct ggattcctga tactgataga atctccattc gaataagagc accagacaat      3180
     tcagaatcgc taacgaaacg gaatgtgtgt cgtaacatag caaggattta cgatccatta      3240
     gggctcctag acccggtaaa aatgatagcc aagatctttc tacaaaggct gtggatgtgg      3300
     aggaaggaag atcaatcatc attaggctgg gatgaagagc tgcctcaaca ttttcaacga      3360
     gattggaaca actatgtgga acagcttagt aaattagcag atgtttctgt tccgcgattt      3420
     gtgtcatcag cgtcctatgt agagttgcag cttcacatat tctgtgatgc ttcagagaga      3480
     ggctacggag catgctcata catccgtgtg gaaactggag atggtgaaat atctgcaatg      3540
     ttactgatat ccaaatcaaa ggtagcacca atagcgaaga gacaaacctt agctcgtctg      3600
     gagttatgtg cagcagtgtt aggcagccgt ttgtatggat tcataaagga tgcaataaga      3660
     gtaaaccttc gctgtttttt gtggacagac tcaatgacgg tgcggcattg gattaacgcg      3720
     tcaccgaaca gatggaaaac ctttgtagcc aaccgtgtgg caaagataca aagacacaca      3780
     agggagtgtt cgtggaggca tgttccgggc aaccaaaatc cagcggatgc agtctcacgt      3840
     ggatgtttac cacaggagct gaccaatacg tggtggaatg gtccatcatg gttggtaaac      3900
     aaggaagatt tctggccatc acaagcagaa ttaaggaacg acactttaat agaagacgaa      3960
     aaacgtgtcg tactcatcac caggcgagaa gaagaatcat tcagcgagca actattttcg      4020
     agatattctt cttactcgaa attgcggaga gtcgtgagct actgcattcg attcatcaat      4080
     cgatgtttgg gtagacaaag gagcacggat cgagagatcg tcgaggagtc aaagtggcta      4140
     acaacatcgg agttagaagc agcggaacgg gctatttgca gaatggctca gcgagatgcg      4200
     ttcacagagg agttcaacac actagcaaag aacaatcgag tactacaatc atcatcattg      4260
     aaatacttgc atccgttcat cggaactgat gctctcatcc gagtgggcgg tcgattgggc      4320
     aacgcagatg tatccaggtc cgaacaattt ccgatagttg tgccgagaaa ccatgctctc      4380
     gcagaattgc tagccaatta ctatcatctt cgtttgctac atgcgggacc acagctaatg      4440
     ttatgtgaaa tacgtcaacg attttggatc ctcggtgcta gagcattaat tcggcgaaca      4500
     tatcatcagt gcatccgatg cttcagatgc aatccgaaac cagtatcgca accagtggca      4560
     ccgcttccag tcgctcgggt ttctccatca aagccatttt ccgtcactgg tgtagactat      4620
     tgtggaccaa tctacacaag gctcaatcgt agagcagttg cacgcaaggc ttatatcgct      4680
     atttttgttt gttttagcac ccgagccctt cacatcgagc tagtgtcgga tctaacaaca      4740
     gaagccttta ttgcagctct acgcagattc atcgcaagac gaggagaagt cacggaaatc      4800
     cactctgata acgggacgaa tttcaaggga gcggcaaatc agttgcatga ggtccacacg      4860
     ttgctgaaat cggaagagca taagagtcgt gtacaccatt ggtgtctaaa ccatgcgatt      4920
     agatggaggt ttattccacc acgtgctcca aactttggtg gactttggga ggcggccgta      4980
     aaatctacaa aatatcattt tgtcagggta gtaggagaaa ctaagttaac gtttgaagaa      5040
     gcaagcacgc tgttagcaga aatcgaatgt atacttaata gcaggccgat taccgcatta      5100
     tccaacgatc ctgaagggtt tgaggcatta acgcctggtc attttttaat gggaaaccaa      5160
     cccagaatac tagaagaagt ggatagaaca gaagtagcta caaatcgctt gagtcgctgg      5220
     cagttagtta gcaaattaag ccaacagttc tggaagagat ggcataggga atatttgcaa      5280
     actctattac caaaaggtgg aaaacagaat aagcacacca tccttcagaa ggatatgtta      5340
     gttctcatcg ccgaagaaaa ctgttctcca acacggtggc cattagctag gatagtagaa      5400
     ttacataaag gtacagatga tatcgtacga gttattacgg ttaaaacaca aaggggcttg      5460
     tttaaacgtc cagtatcaag aatttgcatc cttcctgaac agaactcatt ataagtaaag      5520
     ggaaatagaa aaaccattca tgggtttttg gtggccggca                            5560
//
ID   BEL-19_AnFu-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 723-723 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 91 A; 29 C; 45 G; 52 T; 0 other;
     tgttgacgcc aagcaatatg caatacgcat ggcaatgaat tataggatat aggattttat        60
     aacatacgaa taggatagga actactataa aataatgaac taaaatgtaa tgaaataatg       120
     aatttagttg taacgaaata atgacgaagg aataaacagt cgaacttgta accccggcga       180
     gagcgaacag catttttagc attgagaagc gagaaca                                217
//
ID   BEL-19_CQ-I repbase;    DNA;    INV; 5847 BP.
XX
AC   AAWU01039046;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_CQ_;
KW   BEL-19_CQ-LTR; BEL-19_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5847
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 191-191 (2011).
XX
DR   Genome; AAWU01039046; Positions   62744   68590.
XX
CC   Positions [4792-5373] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2305..5847
FT                 /product="BEL-19_CQ-I_2p"
FT                 /translation="MCNWSQFTGISIRLASRWFGKFGQTQDSSNGCCLNIS
FT                 TSKFWALEEVTSAEAKSPLNSNNRCEDFFVQTTTIREDGKYVVRLPFKEEP
FT                 VLLGDSFEQAKKRLLSLERKLARNPTVYDQYRAFLKEYLELDHMEMVEQKD
FT                 ICKVRYFIPHSCVIKPDSTSTKLRVVFDASAKTTNGRSLNDAMLSGPPIQS
FT                 DQFDLLLDFRCHDKVLMGDIAKMYRQVVVHEVDSWFQTILWRNTPEEPIQV
FT                 YRLKTVTYGEAASSFLACRALHQVGEELRTELPEIAAMIQRRFYVDNLMMG
FT                 GDSAEELLDRRRAVEAALMKRGFPLRKWAANDLSIIADIPNHDRETEIRIG
FT                 DHEIIKTLGVAWSPREDTFKFLVEEQQAIRTSMTKRQLASEVLRLYDPLGV
FT                 MQPIIITAKILLQGLWKTKLGWEDHIPDETLHEWQNLKKSLPKLAELKFPR
FT                 RAMPSNPVRLELHGFSDASSRAYGAAIYAFAVDAQGNKSFNLLCSKSRVVP
FT                 IKELSLPRKELLGAKLLAELMYRALGIVPHTVDKVHYWCDSQVVLAWIHSN
FT                 VPHHEVYVRNRINIIQNLSEKTNWKYIPTDLNPADIISRGISVRKLLNVKR
FT                 QLWLHATTYVLENHGEVQIAAVQQMAADPPRPEINDLIASYKYCNFYRYTR
FT                 RHFAWLYRAKRNLMARSNLLKSRGICVQVKTGPLDVEDLEAGMCLIVKTMQ
FT                 SICIPEEVKSIELTGQPTSQGPLQHLFPFIEDGVVRVSGRLDLADLPADQK
FT                 RPIFLPREHPFIKIILIHIHRSNNHAGLEIVLAQFQAKYYMRGLRKTAQTI
FT                 LRKCVLCARARPRRFEQQMGQLPRPRVNPSAPFTHTGIDLCGPFEVLPSKR
FT                 AKVKLTMYACIFVCFSTKAVHLEIVENQSTSAFIASLMRFVSLRGRPEVIY
FT                 SDNGRNFVGASRELDALRKVYNDEAFQQELIGSIAEEGIRFSFIPPRSPNF
FT                 GGLWESNIKVAKRLFSAAARGASFNVLELQTVFYQVAAIMNSRPLTSVLSN
FT                 AGAPEPLTPGHFLIGRAMNALPIPGSHLEERNLSMRWKRIQAQTHQFWHKW
FT                 QNEYLQHLRCLAKWTKKQPNLQPGQIVLIGDDNNPVAKWPMGIVVETQAGS
FT                 DGVVRVATIRVGANLYKRNVRLLAPLPIEMSSIEDYIEPCNEASRLEHENN
FT                 VPSSVGPDKIWADRLRPKGGRK"
XX
SQ   Sequence 5847 BP; 1735 A; 1333 C; 1364 G; 1415 T; 0 other;
     gttcatgtgt aacagcgaag ctcatcaggt cgtcttcatt cttccagtga ttatcacaga        60
     tccctgcggg agcgggactt gagtgcaaat tcactttttc catttggtga ccccgacgtg       120
     atcgggagga tcgcgttaat taattcaaga cgtcgttggt gtatcgctgc tggtgttcgg       180
     cggctcttca gatgctgata ggtgcatcgc tgctagttca tcggtgttat cacaaatcca       240
     gtgttcggcg gctcttcagc tgctgatagg tgcatcgctg ctagttcatc ggtgttatca       300
     caaatccagt gttcggcggc tcttcagctg ctgataggtg catcgctgct agttcatcgg       360
     tgttatcaca aatccagtgt tcggcggctc ttcagctgct gataggtgca ccgctgctag       420
     ttcatcagtg ttcatcagtt ttatcacaaa tccagatcat cgttggtgca tcgctactag       480
     tgtccggcgg ctccgcagct gctgatcgat catcgttggt acatcgctgc tagtattcgg       540
     cggctcctca gctgctgata gttcatcgga ttaataagat aagtttgata gtaagacttt       600
     ttcaatttat aatattccac cctgcctcgt cgaggaggga aagctaataa acccttaaag       660
     gaaatggacg aaaacgcaca aatagcgttt tttaaaaaaa aacaactaat agcgttagaa       720
     gggtccataa aaagcatggc caacgatgtt ggcaatgttg aaaaggcccc aaaaacaaaa       780
     cctgagatta aggtggtaac tagcatgcta gaccaattat atgatcaagc atgtaacgcc       840
     atcagcaaat tagaaggatt taccgagccc ctcctggaac gcaggaatgg gataatgctg       900
     gtatacagtg gagcacgagt ggcccttgaa gacgcactcg gacagttcga acctttggct       960
     cgagccacag ctccactgat ggagcaaact ttccagcagc agccaggtcg tgcagatcat      1020
     ctgcccagac ttgagctgcc aacatataac ggcaacccaa tagagtggtt ggcgtttaaa      1080
     ggccgattcg agaagcgaat cgcaaacata acagaagatt ccgacaaata tgccttctta      1140
     atgaagtgcc tagaaggatt ctcgactgct cgaaacaaaa tcgacgcatt agagaattca      1200
     ggtgctaaat ttcaagatgt cattaggttc aagagaataa ctactccgaa ccctaaggcc      1260
     atcatgaact tgatggacgt cgtggacacc gctatccacg cagccaaaca aattcatgcc      1320
     gacgctaatc cagcattgga ttgtgtcgct gacggactgt tggtggcgtt ggtcaaatct      1380
     aaacttgacc cagaaacctc ctcaaggatc gaggacgcga tggacatcca tacagtgtat      1440
     ggatgggacg ccttccgcga agaactagaa aagcggacta gccaaatggt gagtttcaga      1500
     aaacgaaaaa gaaaagcacg ctaaaacggt gggtgctata accgccaatg attctgaaaa      1560
     taaaaggccc aaaaagccta agaatcctaa ggataacgca tgctttgtct gtggcgagaa      1620
     acacgccatt aggtactgcg ccaatttcaa aaaaatggcg ctgacgaaga gagtggacac      1680
     ggtaaaagcc gcccacaggt gcttcagctg ccttaaccgt gggcattcat tccagaactg      1740
     cccatcacaa aagtcttgcc ttgagtgcgg tctaaagcac cacactctac ttcacaaaaa      1800
     tgcagaaggt gaaaataccg ctgccacttt accggcaatc atgccatcta cttcggccca      1860
     gtcaccacaa tgactggagc gggaatatgt atttctggca actgccgaaa tacacatatt      1920
     aggtgcgtcc aactggtatg taataagatg cttgttggac tcaggaagcc aggctgaagc      1980
     aatcaccgaa gaagcagctt cagcccttgg aataccaatt atgcatagta atatgcagat      2040
     taaaggtatt ggaggcagcc taaatattac cgggaagata gacacggtaa tagcttccgg      2100
     gtacggaaac ttccgattac caattacgtt aattgttgtt cccaagatgc tagacgatca      2160
     acctagcatt tcaattgaag ccaaagacat atcaattcct aagcatatgg aattggctga      2220
     tcccaccttt tatcataaaa gaagcgtaga gataattctt ggagcaagag ttctcttcca      2280
     aatcttaggg cctaggcgca tgcgatgtgc aactggtccc aatttacagg aatcagcatt      2340
     aggctggcta gtaggtggtt tggtaaattt gggcaaaccc aggacagcag caatggctgt      2400
     tgcctcaaca tctcaacatc taaattttgg gcgctggaag aggtgacttc cgcggaagcg      2460
     aagtcaccac taaacagcaa taataggtgc gaagatttct ttgtccagac cactaccata      2520
     agggaggacg gcaaatatgt tgttcgactc cccttcaaag aagagccagt gcttttagga      2580
     gattcattcg aacaggccaa gaaacgcctg ttaagtcttg agagaaagct agctcggaac      2640
     cctactgttt atgatcagta tcgagccttt cttaaggaat atctagaact ggaccatatg      2700
     gaaatggtcg agcagaagga tatttgcaaa gtgcgctatt tcataccgca ctcatgtgta      2760
     attaagcctg actcaacgtc taccaaactt agggtagtat ttgatgccag cgccaaaact      2820
     accaacggaa ggtcactgaa cgatgcaatg cttagtggac ctccaatcca atcggatcaa      2880
     tttgatctgt tgttggactt cagatgccat gacaaggtgc taatgggcga catagcaaaa      2940
     atgtaccggc aagtggtcgt ccacgaagta gactcatggt ttcaaactat cctatggagg      3000
     aacaccccag aagaacccat tcaagtatac cgtctcaaga cggtaactta cggcgaggct      3060
     gcgtcatcat ttttggcatg ccgagctctt catcaagttg gagaagagct ccgaacagag      3120
     ctaccagaga tcgccgcaat gattcaacga cgattttacg tcgacaacct catgatgggg      3180
     ggagattcag cggaagagtt actggatcga aggagagcgg tggaagctgc gcttatgaag      3240
     cgaggcttcc ccctccggaa atgggcggct aatgatttaa gcatcatagc ggacatcccg      3300
     aatcatgatc gtgaaactga aatccgcatt ggcgatcatg agataattaa aacattaggt      3360
     gtagcctggt caccacgaga agacaccttc aagttcctcg tggaagaaca acaggctatc      3420
     aggacttcaa tgacgaagag acaactagct tcagaagtgt tacggttgta cgatccatta      3480
     ggagtaatgc aaccaattat cataactgcc aaaatacttc tacaaggttt gtggaagact      3540
     aaattgggct gggaagacca catccccgat gaaactttac atgaatggca gaatctaaaa      3600
     aaatcattgc ctaaattagc tgagcttaaa tttcctcggc gggctatgcc aagtaatcca      3660
     gtacgtttag agttgcacgg attttccgat gcctcatcaa gagcatacgg agccgctatc      3720
     tacgcgttcg cagttgacgc acaaggtaat aagtccttca atttattatg ttccaaatcc      3780
     agggtggttc caataaagga gctctctctt cccaggaaag aactactggg agccaagtta      3840
     cttgcagaat tgatgtacag agcgcttggc atcgtcccgc acactgttga caaggttcac      3900
     tattggtgcg attcccaagt ggtgttggcc tggatacact ccaatgtgcc tcaccacgag      3960
     gtctacgtgc gcaatcgaat taacatcatt caaaacttat ctgagaagac aaactggaag      4020
     tacattccga ctgatcttaa cccagcggat atcatatctc gagggatttc cgtcaggaaa      4080
     ctgcttaatg tcaaaaggca gttgtggctt catgcaacta catatgttct tgaaaatcat      4140
     ggcgaagtac aaatagctgc ggttcagcaa atggcagctg acccaccgcg accagaaata      4200
     aacgatctca ttgcaagcta caaatattgc aacttctata gatataccag aaggcatttt      4260
     gcttggttat atcgggccaa gagaaacctc atggcccgat caaatttgtt gaaatctagg      4320
     ggaatatgcg ttcaggttaa aactggcccc ctagatgtag aagatctaga ggccgggatg      4380
     tgccttattg tcaaaactat gcaatcaata tgcatacccg aagaagtcaa gagtattgag      4440
     ttgacaggtc aacccacatc tcaagggcca ctgcaacatc tgttcccatt tattgaagat      4500
     ggtgtagtaa gagtatccgg taggttggac ttagccgatc tacccgcaga tcagaagcgg      4560
     ccaatcttcc ttcccaggga gcatccattc atcaagataa tattaattca tatacatcgg      4620
     tccaataatc acgctgggtt ggaaattgtg ttagcccagt ttcaagccaa atattacatg      4680
     cgcggcttaa gaaaaactgc acaaactatt ttgagaaaat gcgtgctttg cgcgagagcc      4740
     agaccacgta gattcgaaca gcagatggga cagttacctc gcccacgcgt aaacccatct      4800
     gcacctttta cccacacagg aattgacctg tgtgggccat tcgaagtttt accaagcaaa      4860
     agggcaaaag taaaactcac aatgtatgcc tgcatattcg tgtgtttctc aaccaaggcc      4920
     gtacatcttg aaatcgtaga gaatcaatcc acaagtgcat tcattgcctc gctcatgcga      4980
     tttgtatcgc tccgaggaag accagaagtt atctattctg ataacggtcg caattttgta      5040
     ggtgccagtc gtgaattgga tgcattgcgt aaggtgtata atgatgaagc ctttcagcaa      5100
     gaactaatcg gaagtattgc tgaagaaggc atcagattct catttattcc gcccagaagt      5160
     cccaattttg gaggactctg ggaatcaaat ataaaagtgg ccaagaggct attctccgca      5220
     gcagcacgag gcgctagctt taacgttcta gagctgcaaa cggtatttta ccaggtggcg      5280
     gccattatga actcacgacc gctcacttcg gtattatcaa atgcaggagc tccggagcca      5340
     ttgactccgg gtcacttcct aataggtagg gcaatgaatg cactacctat tcccggtagt      5400
     caccttgaag aaaggaatct ctctatgagg tggaagcgca tacaagcgca aacacatcaa      5460
     ttctggcata agtggcaaaa cgaatatttg caacacttac gctgcctggc caagtggact      5520
     aagaaacagc ccaacttgca accaggacaa attgttctta taggagatga caataacccg      5580
     gtggctaaat ggcctatggg gattgttgtc gaaacccagg cagggtccga cggagttgtc      5640
     cgagtggcaa ctatcagagt tggagcaaac ctttacaaga ggaacgtcag actactagct      5700
     cctctcccta tagagatgtc ttcaatcgaa gactacatag aaccctgcaa cgaagcaagt      5760
     aggctcgagc acgaaaacaa tgtgccttct tctgttggac ctgacaaaat ttgggccgac      5820
     agacttcgac ccaaaggggg gagaaaa                                          5847
//
ID   BEL-19_CQ-LTR repbase;    DNA;    INV; 474 BP.
XX
AC   AAWU01039046;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_CQ_;
KW   BEL-19_CQ-I; BEL-19_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-474
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 192-192 (2011).
XX
DR   Genome; AAWU01039046; Positions   62270   62743.
XX
SQ   Sequence 474 BP; 131 A; 116 C; 114 G; 113 T; 0 other;
     tggtgcgatc aaagttgagt gcttgatcgc taccgatatt ggtagtgctg accagcgctc        60
     caatcacatt gtcaacacaa aatgtgctag accaccacgg ccctatttgg ccaaactgag       120
     tttatttgtt taaacaaact cactaacagc cgagtcggca attatcaagt gccgccggat       180
     tgagctgcaa caatgttgca gctcattcag tgttcaaaca ccaccaataa tgtggccctt       240
     ctcaaacaaa ttctgcgccc gaagtggcga tcgaaaacac cgtcagcacc cacgaggtgc       300
     tgggatacag tatcgacgcg atgatgatcg tcgtcgtcat catcattatc atcatttggc       360
     gctggcgacg caatgtgcgt cgcttgcggg aattggagtc ggtggccacg cggctggccc       420
     gacaagcagt atgaattagg ctaagttcat atagaagaaa ataaaagtag ttca             474
//
ID   BEL-19_DAn-I repbase;    DNA;    INV; 5713 BP.
XX
AC   AAPP01020110;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DAn_;
KW   BEL-19_DAn-LTR; BEL-19_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5713
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020110; Positions  314962  309250.
XX
CC   Positions [4742-5332] - Integrase core
CC   'ACCAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..5713
FT                 /product="BEL-19_DAn-I_1p"
FT                 /translation="MMPTKHSPRRSPRLEASGVPATATTTATATCTPASSA
FT                 SVAGDRQRPLTPKESGTAARKAASNLQPEARGQIADPTTVQVAALMERIAR
FT                 LESELEKARASGGQAEAARNPVGIGASGVGVSGAANTPPCLSGMMQTELGV
FT                 TSSLQLPAQLSASLPPQWSGNLAPTLGGHYANGQPVTRTYTPTTTVGYSLP
FT                 FCVTATAQPGLGYVHPPREPTHNLEVSAPLNLPYEVATASIPGWTPRRLPD
FT                 LPDFDGQPEEWPIFLCAFTETTAAYRCTQLENNQRLVKALKGDARETVKSL
FT                 LIHPSNVEAVMEQLQFRYGRPGLLIRSQLDSVRDVQPIQEANIARIVPFAT
FT                 KVSNLAAFLQSTPIGSQHLGNPTLLEELIAKLPLSKRLDWARHAATIQPYP
FT                 TVVHLSEWLHEFARLVCTVTDVGAKEQPKRRILHANSVHEEERYADRPRCC
FT                 PICEGQHQIRDCKEFNGVSTTTRIESARKLRLCFSCLEPGHMSRFCRKSRG
FT                 CNVHGCQMRHHYLLHESPGHSRQPYVAEGGRRSDQRSNSKRSGMPRPVDSN
FT                 ERSRPTSAAVIDAGREQDERRSTSDRHDLMHRNLNCVDSIGCHLLFRILPV
FT                 TLYGENTQVDTYALLDEGSSVTLIDDELIRSLNLKGESRQLNLQWFGGKSA
FT                 KEHTKVVSLQISAAGKPKRHGLKNVYGVANLNLPMQSLRRDDVQAVEANAR
FT                 LPVKPYNNATPRILIGLDHAHLGIPLKTRSYGSGGPFAAATALGWVVYGPV
FT                 SGKVSSPLQSSCLLAVPQDNLLEKMVSDYFEIENFGVKPAQPVAAGGVELA
FT                 PSVADADGDARALRILEESTKREGRRYETGLLWRDDEVILPESYNMALKRL
FT                 VNIERKMRRDVDFARAYKGLMDDYVKKGYARRLEPQEVQRYQEGKLWYLPH
FT                 FGVENPNKPGKIRLVFDAAAKVNGVSLNSALLKGPQRYKPLPAVLFHFREG
FT                 AVGVCADIKEMFHQVLMQPQDRGSQRFLWRNGDDQREPDTYEMQVMTFGAA
FT                 CSPCSADYVKTLNASQYSSTDPRAALAIKEYHYVDDYVDSFTSEEDAIAVS
FT                 TRVREIHADAGFDLCRFTSSSASVVRALNPLESIASVKWTEAEEKVLEMYW
FT                 QPATDDFKFGIKYHRVPRIVMTGERVPTKREFLSLVMSTFDPIGFLSCYMV
FT                 TAKLLMREIWRKGVNWDEPLPADLAAAFEDWRQGMRKIEEFRCPRYYFGGG
FT                 RVRMLQLHIFVDSSQSAFAAAAYENGDENGDVQAHFISSKTKCAPMRTMSI
FT                 PRLELQAAVLGTRLMDTVKQEHGVAISSCVLWTDSKTVLHWISSTHRRYKQ
FT                 FVGNRVAEILESTEASQWRWIPSGENVADDATRPRKAVDLSIGSRWLSGPP
FT                 FLRGPEESWPRSSEGWIPPTPDEEEMKCEFALVMVNFISLQRFSKYNRLLR
FT                 STAWVLRFIRRCRGLRYDGEDHGLTSMECAEAERALVRQSQREAFAENDQG
FT                 KAAKGSRLHGLSPYFDEDGVMRASGRIDDATCVPYSARRPIILCHDEALAE
FT                 MIVQHHHERMCHQNTEATIGAIRQKFWITNLRRLLRRVVSKCNVCKLRRAR
FT                 PTQPEMGPLPEDRLEANGWPFKFTGLDYFGPLFVTVGRRTEKRWVALFTCL
FT                 TTRAIHLEMAHDLSTDSCIIAMRNFMCRRGPVVRIRSDNGKNFVGADREAR
FT                 RFSEVFEPAQIQGELSSKGVEWVFNCPANPAEGGAWERMVQCVKKVLAHTM
FT                 KELAPKEHVLENLLIEAESIVNSRPLTHLPVTVDQEAPLTPNDLLKGAPDL
FT                 PDLPKDDGQEVVRCATRKQWRIARMMRDRFWKRWVHEYLPTLVRRERWCKH
FT                 VEPIRRGDLVFICDPAIPRREWKRGVVEEVFTGRDGVPRRAAVRTNDRAKT
FT                 IMRPASKLAVLDVVNAAASRGWG"
XX
SQ   Sequence 5713 BP; 1438 A; 1448 C; 1778 G; 1049 T; 0 other;
     ttttctttta ttcgcactct gcaacatgat gcccacgaag cattcgcccc ggcggagccc        60
     caggctggaa gcctcgggtg ttcccgcaac tgcgaccacc acggccacag caacttgcac       120
     cccggcaagc tctgcgagtg tggctggtga tcggcagcgg ccactgactc cgaaggaaag       180
     tggaacagcc gccaggaaag cggcaagtaa cctgcagccc gaagcaaggg ggcagattgc       240
     agaccccaca actgtgcaag tggcggccct gatggaaagg atcgcacgtc tcgagtcgga       300
     gctggaaaag gcaagggcaa gtggaggaca agcagaggcc gccaggaatc ccgttggaat       360
     cggggcaagc ggcgttggag tgagcggtgc ggcgaataca ccgccatgtt tgagtggaat       420
     gatgcaaacg gagcttggag tgacgtcatc gctgcagttg ccggcacaat tgagtgcaag       480
     tttgccgcca caatggagtg gaaatttggc gccgacgctg ggcggccatt atgcaaacgg       540
     gcaacctgtc acacggacat acacaccaac aacaacagtg ggctattctc tgccattttg       600
     tgtgaccgcc acggcgcagc ctgggctagg ttatgtccat ccgccacggg agccgacaca       660
     caatttggag gtatctgcac cattgaacct gccatatgaa gtggcgacgg cgagcatacc       720
     tggatggacg ccacgtagat tgcctgatct tcccgacttc gacggtcagc cagaggaatg       780
     gccaatattt ctgtgcgcgt tcacggagac aacggcagcc taccggtgta cacaactgga       840
     aaacaaccag cggctagtga aagccctgaa aggcgacgcc cgagagacag tgaagtcgtt       900
     gctcatccat cccagcaacg tagaagccgt tatggagcag cttcaatttc gatatggacg       960
     tccggggcta ctcatccgta gccaactgga tagcgtgcgc gatgtgcagc caattcagga      1020
     ggccaacatc gcaaggatcg tcccgttcgc aacgaaggtg agcaacctag cagcgttcct      1080
     gcagtcaacc ccgatcggca gccagcacct agggaaccca accctactgg aggagctgat      1140
     cgccaagctg ccgctgagca agaggttgga ctgggcgagg cacgcggcca cgatacaacc      1200
     gtatccgaca gtggtgcacc tgagcgaatg gcttcatgaa ttcgcaagac tggtgtgcac      1260
     tgtcacggac gttggagcca aggagcaacc gaagcgaagg atcctgcacg cgaatagtgt      1320
     tcacgaggag gagcggtatg ccgaccgccc cagatgttgc cctatatgcg agggacaaca      1380
     ccagatcagg gactgcaagg aattcaacgg cgtttctacg acgacgcgga tcgagtcagc      1440
     gaggaagttg agactatgct tctcgtgtct ggagcccgga cacatgtccc ggttctgcag      1500
     gaagagccgc ggatgcaacg tccacggatg ccaaatgagg catcactacc ttctccacga      1560
     gtcacctgga cattctagac agccgtacgt cgcagaggga ggccgcagga gcgaccagag      1620
     aagcaacagc aaacggagtg gaatgccacg accagtggat tccaacgaga ggagccgtcc      1680
     cacgtcagcc gcagttatag acgcggggcg tgagcaggat gaaaggcgat cgacgagtga      1740
     ccgccacgat ttgatgcatc ggaacctgaa ctgcgttgac tcgattggat gccacctact      1800
     attccggatt ctacccgtga cgttgtacgg ggagaatacg caggtcgaca cctatgcact      1860
     gctggatgaa ggatcgtctg tcacgctcat cgatgacgaa ctcatccgca gcctgaacct      1920
     gaaaggcgag agtcgccaac tgaacctgca atggtttggt gggaaatctg ccaaagagca      1980
     cacgaaagtg gtcagcctgc agatcagtgc agcgggcaag ccaaagcgcc atgggctgaa      2040
     gaacgtgtac ggagtagcca atttgaacct tccgatgcag agcctgcgtc gggatgatgt      2100
     acaggcagtg gaggcaaatg cgcgcctgcc tgtgaagccg tacaacaatg cgacgccgag      2160
     gatcctaatt ggactggatc atgcgcatct tggaataccc ctcaaaacaa gaagctatgg      2220
     atctggagga ccattcgcag cagccaccgc acttggatgg gtggtgtatg gaccggtgag      2280
     cggaaaggtg agctcaccgc ttcagagttc gtgcctccta gccgtgcccc aggataatct      2340
     tctggagaag atggtcagcg actatttcga gatcgagaat ttcggagtaa agccggcaca      2400
     gccagtcgca gctggcggag tggagctggc gccgtcagtc gcagatgcag acggcgacgc      2460
     acgggccctg agaatcctgg aggagtcgac taagcgagaa ggtcgacgat atgaaaccgg      2520
     gctgctatgg agagacgacg aggtgatact gccggagagc tacaatatgg cgcttaagag      2580
     actcgtcaac atcgaaagaa aaatgaggcg cgacgtggac ttcgcgcggg cctataaagg      2640
     attgatggac gattacgtga agaaggggta tgcacgacga ctggagcccc aggaagtcca      2700
     gaggtaccag gaaggcaagc tatggtacct gccgcatttc ggggtggaaa acccgaacaa      2760
     acctggaaaa atccggctgg tcttcgacgc ggctgccaag gtgaacggag tgtccctcaa      2820
     ctcagcgctg ctgaaaggcc cacagcgcta caaaccactt ccagcagtgc tcttccattt      2880
     tcgggaagga gcagttgggg tttgtgcaga catcaaggag atgtttcacc aggtactaat      2940
     gcagccacaa gatagaggtt cccagaggtt cctgtggagg aacggagatg accagcggga      3000
     gccggacaca tacgagatgc aggtgatgac gttcggagca gcttgctcac catgttcggc      3060
     ggactacgtg aagaccttga atgcctcgca gtacagcagc acagacccgc gagcagccct      3120
     ggccatcaag gaataccact acgtggacga ctacgtcgac agtttcacca gtgaagaaga      3180
     tgctatcgcc gtttcgacac gggtgagaga aatacacgca gatgcaggat ttgacttgtg      3240
     tcgatttact tccagttcgg caagtgtggt cagagcgttg aacccacttg aatccatcgc      3300
     tagcgtcaaa tggaccgaag ctgaggagaa ggtactagaa atgtactggc agccggctac      3360
     agacgacttc aagttcggca tcaaatatca tcgagtcccg agaatcgtga tgacagggga      3420
     acgcgtccct accaagaggg agttcctaag cctggtcatg tccacgttcg acccgattgg      3480
     attcctgagc tgctacatgg tgactgccaa attgctaatg agggagattt ggcggaaagg      3540
     agtcaactgg gacgagccgc taccagctga tttggccgca gcctttgagg attggcggca      3600
     aggaatgagg aagatcgaag agttccgatg tccgcgctac tacttcggcg gtggacgcgt      3660
     gcggatgcta cagctgcaca tctttgtgga ctccagtcag tcggcgttcg cagcagcggc      3720
     ttacgagaac ggagacgaga acggagacgt gcaggcgcat ttcataagct ccaagacgaa      3780
     atgcgctccg atgaggacta tgtcgatccc gcgactggaa cttcaggcag cagtattggg      3840
     cacgagactg atggacaccg tcaagcaaga gcacggtgtg gcgatcagca gctgcgtatt      3900
     atggacggac tctaagactg tgttgcactg gataagcagc acccaccgga gatacaaaca      3960
     gttcgtcggt aatcgagtgg cggagatctt ggaatccacg gaggcgtccc agtggagatg      4020
     gattccgtct ggcgaaaacg tggcagacga cgcgacgagg ccgcgcaagg ccgtggacct      4080
     gagcattggt tcgagatggc taagcggtcc accatttcta cgaggaccag aggagagctg      4140
     gccaagatcg agcgaggggt ggatccctcc gacgcccgac gaagaggaaa tgaaatgtga      4200
     gtttgctttg gtcatggtga atttcatatc cctgcagaga ttctcgaaat acaatcgact      4260
     gttgaggagc accgcatggg tgctcagatt tatccgtcgg tgccgtggat tgcgatacga      4320
     tggagaggat cacggactga cgtcgatgga gtgcgctgaa gctgagcgcg cactagtacg      4380
     gcaatcgcag cgagaagcgt ttgctgagaa cgaccaaggg aaggccgcca agggcagccg      4440
     gttgcatgga ctgtccccat acttcgacga ggacggagta atgcgagcca gcggaaggat      4500
     cgacgacgcg acgtgtgtgc catacagcgc acgtcgaccg atcatactgt gtcacgatga      4560
     ggcactggcg gagatgatcg tgcagcatca ccacgagagg atgtgccatc aaaacacgga      4620
     ggcaaccatc ggagcgatcc ggcagaagtt ctggattacg aacttacgga ggctgctacg      4680
     aagggtggtg agcaaatgca acgtttgcaa gctgcgaagg gcacgaccaa ctcagcccga      4740
     gatgggtccc ctaccagagg accggctgga ggccaacgga tggcccttta agttcactgg      4800
     tttggactat tttggaccgc tatttgtgac ggttggacga cgcacggaga agaggtgggt      4860
     ggctctgttt acgtgtctaa ccacaagagc tatccactta gagatggctc acgatttgtc      4920
     caccgattcc tgtataatcg ccatgagaaa ctttatgtgc cgacgtggac ccgtcgtcag      4980
     gattaggagc gataatggga agaacttcgt tggagccgac cgcgaagcca ggaggttcag      5040
     cgaagtgttc gagcctgcac agatccaggg cgagctgtcg tccaaaggag tcgaatgggt      5100
     cttcaattgc ccggcgaacc cagctgaggg tggcgcctgg gaaaggatgg tgcagtgtgt      5160
     gaagaaggtg ctggcgcaca caatgaaaga acttgcgccc aaggagcacg tactggagaa      5220
     cctgctgatt gaggcggaga gcatagtgaa ctctcgtccg ctcactcatc taccagtgac      5280
     ggtggaccag gaggctccac tgacacccaa cgatttgctg aagggagcac ccgatcttcc      5340
     agaccttccc aaggatgacg gacaggaggt cgtgagatgc gctaccagga agcagtggcg      5400
     catagcgagg atgatgcggg accgtttctg gaagagatgg gtgcatgagt acctgcctac      5460
     acttgtgcgc agggagagat ggtgcaagca cgtcgagcca attcgccgag gagacctggt      5520
     gttcatctgt gatcctgcca taccacgaag ggagtggaaa cgaggcgtcg tggaagaggt      5580
     gttcaccgga agagatggag tacctcgtcg agcggcagtg cggactaacg atcgagccaa      5640
     gactataatg cgtcccgctt cgaagttagc tgtcctggat gtggtgaatg cggctgcttc      5700
     acgggggtgg gga                                                         5713
//
ID   BEL-19_DAn-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   AAPP01020110;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DAn_;
KW   BEL-19_DAn-LTR; BEL-19_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-347
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020110; Positions  309249  308903.
XX
SQ   Sequence 347 BP; 121 A; 58 C; 81 G; 87 T; 0 other;
     tgtcgcggaa cggattaggt tatcgatagt tagttaagtt taaattaagc gccacagtat        60
     ttttgtatcg atagctttgg tattttaagt ttagattatt tggtcccacg aaaaaaaggt       120
     aaacagaggg aaacaattgg cggaaccagc aaataagacc gatttgcgcc atcacgaaag       180
     agggaagaga aactgcggta ggttaagaat aagtagttgt aaaaataagt aatcaatgta       240
     acctttgcag aataaaaccg atcaaaaagc acagaactcc aactgttgtc cagcactagt       300
     gcttgaagtg tttaaaggca ttccccgtga tcggccaagc ggcgaca                     347
//
ID   BEL-19_DEl-I repbase;    DNA;    INV; 7766 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DEl-I;
KW   BEL-19_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7766
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7086-7086 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1505..6574
FT                 /product="BEL-19_DEl-I_1p"
FT                 /translation="MPGGDDKKKVSASPLSKTKSSKSPPSIVVKPATPKTP
FT                 SSLSPNAKPATSSSRVTRSIQKMASTAYELALNKFIAVSDRLSDLESRTNT
FT                 PGNETPSVSMLQIRREQVRVLWDKVEKEFDVCSECITAAGEDAASTLPILK
FT                 SKYNYCYTVYERYAAQLTDIIQQGTAPPAQAQAPAQNYISSGCRLPPCDTE
FT                 VFSGDYLRWPTFRDLFTAIYINNPRLTPVEKLFHLNAKTSGDAHAIIANSP
FT                 LTNDGFRSAWDNLTERFDNKRLLVNSQLKILFNLQSISQESGAALKELQTT
FT                 IQGCLNALELSGILITDWDCILVYMCSSKLPKLTLSLWEQSLHDKAAIPKW
FT                 VDLNTFLTERHRTLEAIDDVRPSGSSHSQSKATNASGSLSRINSYETKIVP
FT                 KPRRCDLCSRESHPIRTCPRFLQMTVDERAAYIRNKQLCLNCFARGHQLRD
FT                 CTSTHSCFTCRSRHHTLLHRSNPFASPPSRPDVPMSRPATSTEGSAASDDQ
FT                 SGVQVCFASGARSVLLGTAIINICHLGSNFQARALIDSGSEATFVTERLFN
FT                 LFKLPFQVVQAQVSGLNQTVSAQSKKLCHFTIRSPSRPALQLETSAYVLPQ
FT                 LAGNLPSYPIPQDFLRNLPDLPLADPKFYESAQIDVLIGADILPSVLLNGA
FT                 KTNICGSLLGQETIFGWVLTGPVSASTQSQIATFSTQISQAYDNGLDKILT
FT                 KFWEVEDLPIKLVKESDSVCEENFLRTTTRDANGRYVVTLPFRDPEHPGSG
FT                 LGYSRSFALSQFLRNEQRLKRDIPLKIRYDSVIQEYLDLNHMREVFPTHDF
FT                 ASYYLPHHAVLKPESTTTKLRVVFNASSPSANGASLNDILHAGPVLQSDLT
FT                 IQILKWRYFQYVFSADIEKMYRQIWVDPKHTPFQRILFRNPDGDIREFELK
FT                 TVTFGVNCAPYLAIRVLQQLATDVQHSHPKASDVIRHFMYVDDVLAGADSK
FT                 EDARLSIQELQSALNSAGFPLRKWTSNHKDILAHIPSDHLLRSDFLEIDAE
FT                 STAKTLGVRWKATSDEYFFVPPELSDESSLTKRQVLSQIAKLFDPAGWLAP
FT                 FVVRAKIFMQEIWLQDLGWDDELPSDLCLRWQSFLQSYSALNRIRIPRWVS
FT                 FRPEFRVEHHGFCDASQTAYGAAIYVRVEVGHTTMVHLLTAKTRVAPVKTV
FT                 SLPRLELCGALLLAEMAASVLPSMPILTSELFCWTDSTIVLAWLNKPACQW
FT                 TTFVANRVTKITQSTKAEKWSHVQSEHNPADLASRGVALQELVDNPLWWHG
FT                 PAWLQKPRSQWPSQGDNSPATELEKRPLKSHVATIPSEDFLDRFSKFDKAL
FT                 RVLAYVNRFIQRCKKQATPSDKHLLAAEISAAERLLILNTQRRDFSHDYHC
FT                 LSEKRSVPSSSSILSMNPFIDQHGLIRACGRVTASDSLQYDERHPVILPYS
FT                 CPLSRLLVQFTHRITLHGGNQLMVRLIRSRYWIPKLKNLVKAIVNSCKVCV
FT                 IYKKRLQTQLMGTLPKNRASFSRPFTYTGMDFAGPFEIKNYTGRACLITKG
FT                 YVLVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQVQSDNGKTF
FT                 VGAAALLSRDFLQAVKESVTDAYGHQQLTWQFIPPGAPHMGGLWEAGVKSF
FT                 KTLFYKSTATRKYTFEELSTLLAKIEACLNSRPLSPMSEDPTELLALTPGH
FT                 FLVGGPLLSTVEPEVKGAPGL"
FT   CDS           join(6574..6888,6765..7043,6979..7764)
FT                 /product="BEL-19_DEl-I_2p"
FT                 /translation="MINRWQHLKALHQQFRMRWKEEYLKELHKRNKWQAPA
FT                 KNLHVGDMVVIKDENLPSNEWRLGRIDSVFPGADGNVRVVDIRTARGVVKR
FT                 PITKVVLLPVEPSKLPQLCLPRSRWQCPCSRHPHGTRGCQTSNNQSRTSAC
FT                 GAFKTSTINWPTFFSPKLLSTIPNMISLYSPSFIHDLDQKNGSPNTHRRTP
FT                 GRQTYSRYIRKMAPRTRTEEPLDGRRTRGIKSYRCRVCKGVHPLRKCSRFL
FT                 KLSAEKRLRAVLVNKYCSNCLAHDHSKADCRSGKCKKCQRNHHTLLHMHER
FT                 SNSGQRSRRQNPPNRPTPASRQRSASPTPAPSLSSLLQRHSVNVLPTASVM
FT                 VKTGSKTFETAALIDPCTPVSCIDASRAAAFRLPTTSVGDDKVCNATIQSK
FT                 CGTTKMEVVFKVEPKVGIRTPTRTLNDAVRTKFKGIQLADERFYLPATISV
FT                 ILGADVYPKVIQSGF"
XX
SQ   Sequence 7766 BP; 2088 A; 2058 C; 1632 G; 1986 T; 2 other;
     ttcgagccgg atatttttcc tttggacccc gcttcggtgg ctcgatcctc ttcaacatac        60
     aacagcaaga taagtacgaa ataaattatt aattgccggt ctccagtaag tgtttcgaat       120
     atacaatttc gtcttacttt ctggatgata ttcatgtcaa atcaaattcc gatttcaatc       180
     cgacattacg gcaatcaata acttcaaatt ttcacttttc cacttgcaat ttgtgtgcgg       240
     ccatcttaat cgttctcccc tttgtgcata ttaatgtaca aaaattctaa gtccagttgg       300
     ccgtacatca ttcatacatc aacctgcaat tttccaaaaa attcctacga ataaatttac       360
     aaactcctaa attacaaaaa gtgttaattt tttgcgcgtg ccacagtgaa aaaatataac       420
     aattttcaat taaagtgttc cggcaatatt ggcccccatt cgttttttgt tctttttcac       480
     tgtgtagagc ctccgctgca caaagttaca ttttacattc acatttacat acattctaca       540
     gtccacttat ctccaaaaca aaaaaaaaat cacaattaca aacaatacac atacccgccg       600
     gcaagaaata ttaactattt ttcacctctc ctggtaaaaa attacatgca accatacatt       660
     tacatttttc cccgtcggcg ctgcaaataa aatacaaaat tgtccaatcg cattttttac       720
     ttacatatta ctctctgatc tacttacatt ttattctctg agcgaaaata catatttaca       780
     gaggcttcat acttacatat tacaaaaaaa aatcacaatt acaaacacca tacacatacc       840
     cgccggcaag aaatatgaac tatttttccc cccggaaaat tacatgagac cacacattta       900
     catattttcc cgtcggcgct caaataaaat acaaaattgt ccaatcgcat ttttacttac       960
     atattactct ctgatctact tacatttgcg ctattctctg agcgaaaata catatttaca      1020
     gaggcttcat acttacatat tttttctcgt gagcgagcac acatacttac agaagcttca      1080
     tacttacata ttttttctct gagcgagggt acatatttac agaggcttgc catacttaca      1140
     tatttttctc tgagcgaaaa tacacattta cagtgcagcc tccgtatggt tatttgacca      1200
     aaatacatat atgaacattt gatttcagct wttcatgggc ggaggtgcag aaagaaacag      1260
     ggggcttatg cacaaaatca atatttgttt tttttctcgt ctggttaatt gaaaaatcca      1320
     attccaattc caacattccg gaaaaagtcc gagtccataa aaactcmgaa atactatttt      1380
     caagtagcgt gttccattcc aatcgttcca cacacctaca attccgcatt ttttttcatc      1440
     caaactgaca caaacatagt gtggcgagat ccacagctat tcgcgtgcgt tttttggtct      1500
     tagtatgccc ggtggagacg ataagaaaaa ggtatctgct tcccccttga gcaaaaccaa      1560
     aagctccaag agcccaccaa gcatcgtggt gaagccggct acgccaaaaa ctccaagttc      1620
     attaagtcca aacgccaaac ccgctacttc cagttcaagg gtgactcgat ccatacaaaa      1680
     aatggcttca actgcttacg agttagcgtt aaataagttc attgcggtct cagatcgtct      1740
     aagcgatctc gaaagcagaa ccaacactcc tgggaacgaa actccaagcg tttccatgct      1800
     ccaaatccgt cgggagcaag tccgagtgtt atgggacaag gtggagaaag agttcgacgt      1860
     atgctcagag tgcattacgg cagcaggcga ggatgcagcg tccacattgc ccattctcaa      1920
     gtcaaagtat aactactgtt atacagtgta tgagagatac gccgctcagc tcacagatat      1980
     aatccaacag ggcacagctc cgccagctca agctcaagcc cctgcccaga actatatctc      2040
     ctctggctgt cggctgcctc cgtgcgacac agaggttttc tcaggcgatt acctacgctg      2100
     gcccactttc cgggaccttt ttacagcgat atatataaat aatccaaggc tcacgcctgt      2160
     ggaaaagctg ttccacttaa acgctaaaac gagcggtgac gcgcatgcca taatcgcaaa      2220
     ttcccctctc accaacgatg gctttcgctc agcttgggat aacctaactg agcggttcga      2280
     caacaagcga ttgctagtaa atagccagct taaaatcctc ttcaacctcc agtcgatttc      2340
     gcaagaatct ggggcagctc taaaggaact gcaaactacg attcaaggct gtctgaacgc      2400
     cttggaactg tccggaatcc tgattacgga ttgggactgc attcttgtct atatgtgttc      2460
     gtcaaagctc cccaagctta cactttcctt atgggagcag tccttgcacg ataaagccgc      2520
     aattccaaaa tgggttgacc tgaacacctt tctcactgag cgccatcgaa ccctcgaggc      2580
     catagatgac gtgcgacctt ctgggtcaag tcattcgcag tccaaagcaa cgaacgctag      2640
     cgggtcttta agcagaataa attcttatga gactaagata gttccgaaac cgagacgttg      2700
     cgatctgtgc tcaagggaaa gccaccctat acgcacttgt ccacgtttcc tccaaatgac      2760
     agtagacgag cgggccgcct atatccgaaa caagcaattg tgcttgaact gctttgcccg      2820
     agggcaccag cttcgggact gcacaagcac ccacagctgc ttcacctgcc gcagtcgcca      2880
     ccatacgctg ctgcaccgaa gcaacccttt tgccagccct ccaagtcggc ctgatgttcc      2940
     catgtcacga ccagcaactt cgacagaagg ctcagccgct tccgatgacc agtcgggagt      3000
     gcaagtctgt tttgcgtcag gtgcaagatc ggttctgctg gggacagcca tcataaatat      3060
     ttgccacctg ggttcgaatt tccaagctcg tgcccttatc gactcaggat ccgaagcaac      3120
     atttgtgaca gagcgtctgt tcaatctttt caaattaccc ttccaagtcg tccaagccca      3180
     agtctcaggc ttaaatcaga cagtgtccgc tcagtccaag aagctctgtc attttacaat      3240
     cagatctcca agtaggcccg ctctgcagtt agagacgtca gcctatgtcc ttcctcaact      3300
     ggcagggaat ctgccttcct acccaattcc gcaagacttt cttcgaaatc ttcccgattt      3360
     accattggcg gatccgaagt tttacgagag cgcacagata gatgttctga taggagccga      3420
     cattctgcct tcggttctcc taaatggggc aaaaacaaac atctgtggct ccctccttgg      3480
     acaagaaaca attttcgggt gggtgctcac tgggccagta tccgcttcca cccagagtca      3540
     gattgccacc ttctctacgc aaatttccca agcgtacgac aatggcttag ataaaatcct      3600
     caccaaattc tgggaggtgg aggatctacc aataaagttg gtaaaggaat ccgattccgt      3660
     ctgcgaagag aattttctcc gaacgaccac gagagatgcg aacggcagat acgtcgtaac      3720
     cctacctttt cgcgacccgg aacatccagg gtcagggtta gggtactcca ggtcttttgc      3780
     gttatctcaa tttttgagaa acgagcaacg cttaaaaaga gacattccac taaagatacg      3840
     atacgactca gtgattcaag aatatctgga tctgaaccat atgagagagg tctttcctac      3900
     ccacgatttc gccagctact accttccaca tcatgccgta cttaagcctg agagcactac      3960
     tacaaagctg cgcgtagtat tcaacgcatc cagtccttct gcgaatgggg ccagtttaaa      4020
     tgatatcctt catgctggcc cagtcttaca gtccgacctt accattcaaa tcctaaagtg      4080
     gcggtatttt caatacgtgt ttagcgccga tattgaaaag atgtatcggc agatctgggt      4140
     agatccgaag cacacgcctt tccagcggat attgttccgt aatcctgatg gggacatccg      4200
     agagttcgag ttgaaaacgg tcacctttgg agtcaattgc gctccgtacc tggccattcg      4260
     cgtgcttcaa caactggcaa ctgacgtaca acacagccat cctaaagcga gtgatgtcat      4320
     tcgtcatttt atgtatgtag atgatgtcct agctggcgcc gactctaaag aagacgctcg      4380
     gctctcgatt caagagctac aaagtgccct caactccgct gggtttccat tgagaaaatg      4440
     gacgtccaat cataaggata ttttggctca cattccgagt gaccatctcc tgcgctccga      4500
     ttttctggag atcgatgccg aaagcacggc aaaaacgctc ggtgtccgtt ggaaagccac      4560
     atctgatgaa tatttctttg ttccgcccga attatccgat gaatcgtccc ttacaaaacg      4620
     ccaggttctg tcacaaattg ccaaattgtt tgaccctgca gggtggctcg cgcccttcgt      4680
     agtgcgtgcg aaaatcttca tgcaggagat ttggctgcag gacctggggt gggacgacga      4740
     acttccaagt gatctgtgtc tgagatggca gagctttcta caaagctatt ctgccttaaa      4800
     tcgaatccgc attccaaggt gggtctcctt ccgaccagaa ttcagagtcg agcatcacgg      4860
     tttttgtgac gcgtctcaaa cggcatacgg tgctgcgatc tatgtacgag tggaagtggg      4920
     gcatacgact atggtgcacc ttctcactgc aaagacgcga gttgcgccgg taaaaacggt      4980
     atcgcttccc agattagagc tttgcggggc cttgttactt gctgaaatgg cagcaagtgt      5040
     tcttccgagt atgccaatac tcacatccga actcttctgc tggacagact ccaccattgt      5100
     gctcgcatgg ttaaacaagc cagcttgcca gtggactact tttgttgcca atagggtgac      5160
     caagattacc cagtctacaa aggccgagaa gtggtcgcat gttcaatccg aacacaatcc      5220
     cgcagacctg gccagtagag gggtagcact tcaggaattg gtcgacaatc ctctttggtg      5280
     gcatggtccc gcatggttgc aaaagccacg cagccaatgg ccaagtcagg gcgacaattc      5340
     cccagcgacc gagctagaga aacgtcccct taagtcccac gtcgcaacta ttccgtctga      5400
     agatttcctt gaccgttttt ccaagttcga caaagcactg cgggttctcg cttatgtcaa      5460
     tcgtttcatc cagcgatgca aaaaacaagc aacaccctct gataagcacc tgctagctgc      5520
     ggaaatttcc gccgcggaac gactacttat tctgaatact cagcgcagag acttctccca      5580
     tgattatcac tgcttaagtg aaaagcgctc tgtgccttct tcaagttcta tcctgagcat      5640
     gaacccgttc atagatcaac atggtctgat aagagcgtgc ggtcgcgtga cggcctccga      5700
     cagccttcaa tatgatgaac ggcatccagt tatccttcca tatagctgcc cactttctcg      5760
     cctacttgtc cagttcactc atcgcataac cctccatggc ggcaaccagt taatggtacg      5820
     cctcattcgg tcaagatact ggataccaaa actaaagaac ttagtaaagg caatagtaaa      5880
     ctcctgcaag gtatgcgtga tctacaagaa aaggctacaa acacagttga tgggcacttt      5940
     gccgaaaaac cgtgcgtcgt tctcccgacc atttacgtac acgggaatgg acttcgccgg      6000
     cccattcgaa attaaaaatt ataccggaag agcatgtctc ataacaaaag gatatgtgtt      6060
     agtgttcgtt tgtttttcca ccaaggccat ccacttagag cctacctctg atctcacgac      6120
     cgagaagttt ctcgccgctt tcgctcgctt cgtttcccgg agagggtgtc ctcgacaagt      6180
     ccagtctgac aacggaaaaa ccttcgttgg cgctgccgcc ttgctttctc gcgacttcct      6240
     tcaggctgta aaagagtctg tgacagatgc ctatggtcat cagcagctca cctggcaatt      6300
     tatacctccg ggagcccctc acatgggagg cctatgggaa gctggtgtta aaagctttaa      6360
     aacactgttc tataagtcca cagccactcg aaaatatact ttcgaagagc tttcgacgct      6420
     tctggcaaaa attgaagctt gcctaaattc caggccactc tcccctatgt ccgaagaccc      6480
     taccgaacta ttggccctga caccaggtca ttttcttgtt ggaggacctc tcctgtctac      6540
     cgtggaacca gaagtcaaag gggcaccagg tctatgatca accgctggca gcatctaaag      6600
     gctctccatc agcagtttcg tatgcgatgg aaggaagaat accttaaaga actccacaag      6660
     cgcaataagt ggcaggcccc cgcgaagaat cttcacgtcg gcgacatggt tgtcataaag      6720
     gacgagaatt tgccttccaa cgagtggcgg ctcggcagaa ttgactctgt cttcccagga      6780
     gccgatggca atgtccgtgt agtagacatc cgcacggcac gcggggttgt caaacgtcca      6840
     ataaccaaag tcgtacttct gcctgtggag ccttcaaaac ttccacaata aattggccca      6900
     cattttttag tcctaagttg ttatccacaa ttcctaatat gatttccctt tattcacctt      6960
     cattcatcca tgatctagat cagaaaaatg gctccccgaa cacgcaccga agaacccctg      7020
     gacggcagac gtactcgagg tattaaatcc taccgttgcc gagtctgcaa gggagtccat      7080
     cctctacgga agtgtagcag gtttctgaag ctgagcgctg agaagcggct tcgtgcagtc      7140
     ttggtaaaca agtattgctc gaactgtctt gcccacgacc actcgaaagc tgactgtcgt      7200
     agtggaaaat gcaagaagtg ccaacggaac caccacacgc tgctgcatat gcatgagcgg      7260
     tctaattctg ggcagcgttc gcgccggcaa aatccgccaa atcgcccgac gcctgcgtca      7320
     aggcagcgct cagcctcccc tacaccagct ccgtcgcttt catcgctgct acaacgtcac      7380
     agcgtcaacg tccttccgac tgcttcggtg atggtgaaga ccggaagcaa gactttcgag      7440
     accgcagctt taatcgaccc ttgcacacca gtgagctgca tcgacgcttc tcgggccgcc      7500
     gcatttcggt tgccaacgac cagtgttggt gacgacaagg tgtgcaacgc gacgatccag      7560
     tccaaatgcg ggacgaccaa gatggaggtg gtgttcaaag tcgagcccaa ggtgggcatt      7620
     cgcacaccga ctcggacact caacgacgcc gtccgtacca aatttaaggg catacagctc      7680
     gcggatgagc ggttctatct tcccgccaca atttctgtca ttcttggggc ggacgtgtac      7740
     cccaaggtga tccagtcggg gttcct                                           7766
//
ID   BEL-19_DEl-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-290
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7091-7091 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 290 BP; 67 A; 101 C; 53 G; 69 T; 0 other;
     tgttcaggcc acgaaggagc acccggtatt cccggctttc cgctctcccc atctgctctc        60
     cgctctcacg cagcttccct tttccccacc acgaagtctc catgaagtct ccactgcgct       120
     ctgaagagca ttagaataag ttagaatagt cagttcgatt tacatagtga ataaaagtgg       180
     ttgcgcccac acccctacca tcgaaacacc tacgactcgt catttcaact acaggacctg       240
     tgcacctttc aggaccctcc agaggactcg gccacccccc tctacgttca                  290
//
ID   BEL-19_DTa-I repbase;    DNA;    INV; 2121 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DTa_;
KW   BEL-19_DTa-LTR; BEL-19_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2121
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1599-1599 (2012).
XX
DR   [1] (Consensus)
XX
CC   'AACA' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           454..2121
FT                 /product="BEL-19_DTa-I_1p"
FT                 /translation="MARPREDAKPLPPAPKELDASISKAIRLLQLRCTEME
FT                 SSLNLASHATTITPALQRHIDAQWALVRQAHDVIEVIPGASDIAATELCQV
FT                 QSLYEEYETTLLRKDDSPLKLTLSQPPVNLPEFAGEYLQWPQFHDLFMELV
FT                 HNQPYPPAQKLHLLQGALKGEARNILTDTAFSQGEYEDTWRRLKTRYQNGK
FT                 ILIFTALAKIFDHEPINGSATQIRALHDTVERSLSTLKSLEIDTQTWDPIL
FT                 GFLIRERLDHKTLAALEDAADAPTEVPTLPSVLSFLERRSCMLEILDEQPS
FT                 RRQPMFATDSTISDCKTTGGSSLCNVITGLFETETSCDAKIKPGLEEGVDD
FT                 HAGPHPVFEEQKDDNPMDDLQLEELCTNNQSVEITKDSERINRNSHNEERM
FT                 HLTNLVLVDHDIIEPEGTCNQVRTIETDSTDQGPTIRPNKSLQLAENQPAS
FT                 ELLRKISSTSHQLRNYANSELLMIFLKLTKKHLRFVAGIPHTLDSPNDQFL
FT                 QGHNFSPHGNAIIFVARAIVHQQQENRKDVNQKLESRQQKEGSDTTPQWGE
FT                 NVRYQCCST"
XX
SQ   Sequence 2121 BP; 708 A; 536 C; 424 G; 449 T; 4 other;
     aacattggcg accccgacgt gatccttgca tttccgaggn tcgcacttac aaggaatcat        60
     taactgattc ttttgaacca cgctcactaa aagtcctccg gatcaggcac atcactaaag       120
     gtcctccagt tcaggcacct cactaaagtc ctccagntta ggcacatcac taaaggtcct       180
     ccagttcagg cacctcaata aaagtcctcc agttcaggca catcactaaa agtcctccag       240
     ttcaggcaca ncactaaagg tcctccagtt caggcacgnc actaaaagtc ctccagttca       300
     ggcacattac taaaagtcct ccagttcagg cacaacacta aaagtcctcc agacaaggca       360
     taccgcgtca aggtcctcca gaaggaacac cgctaccagg tctaacagga tctgtggcaa       420
     cagtttcgtg atctggaccc cgagattaga gaaatggcac gaccacgaga agacgcaaaa       480
     ccactaccac cagcaccaaa ggagctggac gcatcaataa gcaaggcaat ccgactattg       540
     caattacgat gtaccgaaat ggaatcatcc ctcaacctag catcccatgc tactaccatc       600
     acacccgcgc tacagcgcca catcgatgcg caatgggcat tggtgagaca ggctcatgat       660
     gtgatagaag taataccagg cgcttcagac atcgccgcta cagaattgtg tcaagtacag       720
     tcactttatg aagaatacga gacgacgctg ttacgcaaag atgactcgcc actaaagcta       780
     acgttatccc aaccaccagt caacctacct gagtttgctg gggaatacct acaatggcca       840
     caattccacg acctcttcat ggaactagtt cacaatcaac cgtaccctcc tgcacagaag       900
     ctacatctgc ttcaaggtgc acttaagggg gaagcaagaa atatattaac agatacagca       960
     ttctcccaag gagaatatga agacacctgg cgacgattaa agaccagata ccaaaatggg      1020
     aaaatattaa tcttcactgc actcgcaaag atttttgacc acgagcccat caatgggtcg      1080
     gctactcaaa tccgagcgct gcatgatact gtcgaaagat ctctaagcac acttaaaagt      1140
     ctagaaatcg acacacagac atgggatcca attttaggat tcctaatacg agaaaggctc      1200
     gatcacaaga cactagcagc attagaggac gctgccgacg cacccacaga agtgcccact      1260
     ctaccaagcg ttctaagttt cttggaacga agatcttgca tgctagaaat attagatgaa      1320
     caaccaagta gaagacagcc aatgttcgca accgattcaa ccatttccga ctgtaaaacc      1380
     accggaggct caagcctgtg caatgtaatc acaggtcttt tcgaaacaga aacctcgtgt      1440
     gatgcaaaaa taaagccggg cttagaagaa ggagtagacg atcatgcagg acctcatccg      1500
     gtttttgagg aacaaaagga tgacaatccg atggatgacc tccaactcga agagctgtgt      1560
     acaaataacc aatctgtcga aataacaaaa gatagcgaac ggataaatag gaactctcat      1620
     aatgaagaaa ggatgcattt aacgaactta gtattggtgg atcatgacat aattgagcct      1680
     gaaggtactt gtaaccaagt aagaaccatc gaaactgact caaccgacca aggaccaacg      1740
     attagaccga ataagtcctt gcagctagcg gaaaaccagc cagcaagtga actacttaga      1800
     aaaatcagct caacttctca tcaacttcga aactacgcaa attctgaact gttgatgata      1860
     tttctaaagt taactaagaa acatttaagg tttgttgcag gaattccaca tactttagac      1920
     agtccaaatg atcaatttct acaaggtcac aacttcagtc cccacggtaa tgctataata      1980
     tttgtcgcaa gggcgatcgt tcatcagcaa caagaaaaca ggaaggacgt taatcagaag      2040
     cttgaatctc gacagcagaa ggaaggatcc gacactaccc ctcaatgggg ggagaatgtt      2100
     cgttatcaat gttgctcaac a                                                2121
//
ID   BEL-19_DTa-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DTa_;
KW   BEL-19_DTa-I; BEL-19_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-444
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1600-1600 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 444 BP; 134 A; 123 C; 68 G; 116 T; 3 other;
     tgaccaacgt tcgtactcta tgttgctcaa catgatcaac gaccaacaac tctagcagtg        60
     gtattatggt aacagtatca ggcgtccagt tacacccacn gcagatacta tttgctgatc       120
     agcatattcc acatagtcaa tgtcaacggt tgactcgacg tctcactgac ccgccaagca       180
     gtcagcactt tctgcagagt caaccgaccc aactatgcaa actgctacca taatcaaagc       240
     attctgacct actccagaat acaaccaatt ccactattct ttacactaaa cttccgtgtt       300
     atccaagtag tatataagct agtaccaaat tcacaataaa tcagttatca acacatctta       360
     taactccgcg gtcttccttt ctgncctccg ggaagaggnc tcgtatacaa acttatattg       420
     atccacaagc cacgcttggg atca                                              444
//
ID   BEL-19_DWil-I repbase;    DNA;    INV; 5729 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DWil_;
KW   BEL-19_DWil-LTR; BEL-19_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5729
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1795-1795 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4757-5338] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..5728
FT                 /product="BEL-19_DWil-I_1p"
FT                 /translation="MWQWSKQQLGRIDSWKSQTLRDVHFAIYLKFVTETLI
FT                 KRQLRTFKGLNYNNAEKAEHEQAISKELGANALLRVCEFLDIGVGEKETKN
FT                 DLAAKIVDAISFVSTGDSDGSNAIVLEQRLVILEQIENVDTAYVDVKRKMC
FT                 EKETKLINNKRILSEADNNPTANSEIDLTSMHNEILIVQRELELLQAEEEA
FT                 LVSKKNVLKAKVALTDCSSRMSERFETSVRNERTSMWVRSQSEECQNNLDE
FT                 TNNPSMATRAMNQMLARQSLNSKHLEFDGSSALNWTHFIQEFNATSKHCGF
FT                 SKEEDVQRLSKALKGVAKEKVSLLLISAKDPDKIISILDKAYGGAENIALE
FT                 LMSRACQVKPVNNIDNFEEFNNTVQNISSALEYTDNRLIDTQRLLAMMIGK
FT                 LSENYLREWGAYLRDANVRASFCTFDKLAEWAQRQADLIQDVSFFKKVTSI
FT                 NQQSSFAEQYKVTQSQPQEIEAVNQPKPKSKAICFICSEEKHPLTKCNVFL
FT                 KADIKKRWDLANRNKACYSCLKFHKSQCSERQACKIDNCEKFHNPLLHKRP
FT                 IQVNLAATTNVTGCVSDSPKSALLKMVPITVHGEKGSKETVAFLDDGSTST
FT                 IMEMSLAREVGIKGDAKPFCFTWTGGVYRYEADAESATINISGKNGPKHQL
FT                 NGVWLVNDLKIPTQQLDYKKLTEFVPKNMVDYTKLQDRQPMVLIGQRHAKL
FT                 ITARAVIDGNEHRPMLSKTKLGWVVHGPAQTNLQASHFTCCQIEDVCLQQM
FT                 IKQQFSIENFGACTIKIDKTRSVDERSAIAKAESSINQKGNFYEIGLPWKS
FT                 DDIKLPESKSMAFQRLKCLERKLLRDKDTAEAYKNEITKLLDKGYAVQLTD
FT                 INVLNSPKLWFLPHFAVINPNKPGKVRLVFDAAATCNGTSLNSNLLTGPDW
FT                 STSIIGILIRFRLHAVAVVADIREMFNQVSITECDTAAQCFLWRDLDQKRE
FT                 PSIFQMKAMLFGTTCSPFLAQFVKNYNASKFRDEQPDAVKAILENHYVDDY
FT                 LDSKPSAYEVINIINAITKIHSKAGFELCQFISNSDEVMQSIPKTLRANKS
FT                 TAMIGEKMDVQQKVLGVLWDAKGDFFTYSTTVMHKVTDDLLSGKVTPTKRN
FT                 VLSVVNSLYDPLGLMTPVTIKGRILMRDVWESGIGWDDQIKGDLINKWRNW
FT                 IKALISIEGTKIPRCYSSNLNNADRVEMHIFNDASAKAYSSVAYIRCSYVK
FT                 EDKCQFDVSLIASKARVSPIKHITIPKLETMAAVLGCRLAEMISHELQINI
FT                 DQRYFWTDSRTVLTWINSDKRMDVFVANRIGEICEKSVRSEWRWLSTNENI
FT                 ADVITRDNISEHKLHWWLTGPEFLQRPESTWDLQKPIIEEYDQTGVVMVLQ
FT                 EMEHPMDILIQRISGYNKLIRSTAWIGRYINNLTKRLKGNRKLNELSVGEI
FT                 EWAETVWWKVVQQQLFQDDLISLRTGKPSSKLRLSKYCVYLDDNGIMRVDS
FT                 RIERAKEVSTYTKSPVVLDGKHIFTRMLINKIHVDAQHVGTQVVVHQFRKA
FT                 YWMPKLNRIIRTTINACVWCKRKKAKPQTPKMGFLPEERFFTHKKPFTATG
FT                 VDYFGPFYTKAERGTRASKHLRKRYGVIFTCLTTRAINVEIAHSLDTDSCI
FT                 MAVRRMMARRGPIQIIWSDNGTNFRGAARELQEALEDLDECAVKEYMASIK
FT                 IIWNFIPANAPNFGGCWERLVGCFKRAIEAILTVNANPSDETLQTIFMEAE
FT                 YLVNSRPYILESDDPDDELGLCPNDICIPQSCILLGPGNFTPNTMEKRAWR
FT                 ISQYQIDSFWKRFIKEYLPTLIHREKWHKDVPNLEVDDIVVMKDNTPRGEW
FT                 PLGRVMKVFPGEDGVVRVVELKTAKNTYRRPVNRLCKIGVKRYDEKDRAQK
FT                 RDSALGAA"
XX
SQ   Sequence 5729 BP; 1992 A; 1145 C; 1242 G; 1349 T; 1 other;
     tagtggtcct tcgagccgga tagcttaaat agcaatcagc gatagaaata cagtccataa        60
     acaaaaacaa accatttaat caaaaatgtg gcagtggagc aaacagcagc ttggccgcat       120
     tgattcgtgg aaatcgcaaa cactacgaga tgtacatttt gcaatctacc tgaaatttgt       180
     tacggaaaca ttgataaaac gacagcttcg tacgttcaaa ggtttaaatt ataacaatgc       240
     tgaaaaggca gaacatgagc aggcaatctc aaaggaacta ggcgcaaacg ctttattgcg       300
     cgtctgtgag tttcttgaca tcggcgtcgg tgagaaagag acaaaaaatg atttggcggc       360
     aaaaattgtt gacgccatat catttgtcag caccggagac tctgatgggt caaatgcaat       420
     agttctggag cagcgactag ttatactgga acaaattgag aatgtggata cagcatacgt       480
     agacgtcaag cgtaaaatgt gcgaaaagga gacaaagctt ataaacaaca aacggatact       540
     gtcagaggca gataacaacc caactgcaaa ctcagagata gacttaacta gtatgcacaa       600
     tgaaatactt atagttcaaa gggaactaga acttcttcaa gcggaagaag aagcactggt       660
     aagtaagaaa aatgttctga aagccaaggt cgcactaaca gattgttctt cccgcatgtc       720
     cgaacgattt gaaacatctg tgcgaaatga gcgaacttca atgtgggttc gttcgcaatc       780
     tgaagagtgt cagaataatt tggatgaaac caataatccg agcatggcaa caagagccat       840
     gaaccagatg ctggcgcggc agagcttaaa cagtaaacac ctggagtttg atggttcatc       900
     agcgttgaat tggacacact ttatccaaga gttcaatgct acgagcaaac attgcggatt       960
     ctccaaagag gaagatgttc aacgattatc aaaagctcta aagggagtgg ctaaggaaaa      1020
     ggtttctttg ctactaatct ctgcaaaaga tccagacaaa atcatatcga tcttagataa      1080
     agcgtatggt ggagccgaaa atattgcact agagttgatg tcaagagcgt gccaagtaaa      1140
     gccagtcaat aatatcgaca atttcgaaga attcaataac actgttcaaa acataagttc      1200
     tgctttggaa tacactgata accggttaat cgacacacaa cgattactag ctatgatgat      1260
     cggaaaactg tccgaaaact atctacgaga atggggcgca tatctacgag atgcaaacgt      1320
     gcgcgcttca ttctgtacat ttgacaagct agctgagtgg gcacaaagac aagcagatct      1380
     aatccaagat gtctcatttt tcaaaaaggt tacatcaatt aaccagcagt cgtcattcgc      1440
     agagcaatat aaagtaaccc aatcccaacc acaggaaata gaggcggtaa accaaccaaa      1500
     gccaaaatca aaagcaattt gctttatttg cagcgaggaa aaacaccctc taaccaagtg      1560
     caacgtattc ttaaaagcag atattaaaaa gagatgggat ttagctaatc gtaacaaagc      1620
     gtgttacagc tgtctaaaat tccataaaag ccaatgcagc gaaagacaag cctgcaaaat      1680
     tgacaattgt gaaaagtttc acaacccatt actgcacaag agacccatac aagtaaatct      1740
     agcagccacc acaaacgtca caggatgcgt atctgattca ccaaaatctg cattactcaa      1800
     aatggtacca atcacagtac acggcgaaaa aggctcgaaa gaaactgtcg catttttgga      1860
     tgacggtagt acatccacaa tcatggaaat gagcttggca agagaagttg gcataaaggg      1920
     tgacgcaaaa ccattttgtt ttacttggac aggtggtgtc tacagatatg aggcagatgc      1980
     ggaatcggca accattaata tcagtggaaa aaacggtccg aaacatcagc taaatggagt      2040
     ttggttagtc aacgatctaa aaataccaac acaacaactt gactataaga agctaacaga      2100
     atttgtacca aaaaatatgg tagactacac gaagttacag gataggcaac ccatggtatt      2160
     gataggacaa cgccatgcta aattaattac cgcacgagcc gttatagatg gcaatgagca      2220
     tcggccaatg ttatctaaaa ccaaattagg ctgggtagta catggaccag cacaaaccaa      2280
     tctacaagca tcacatttta cttgctgtca aatagaagat gtatgtctac aacaaatgat      2340
     taagcaacaa ttcagtattg aaaacttcgg tgcctgtaca ataaagatcg acaaaacacg      2400
     gtctgtggat gagcggtcag caatagcaaa ggccgaaagc tcaattaacc aaaagggtaa      2460
     tttctacgaa attggattgc catggaaatc ggatgacata aaactaccgg aaagcaagtc      2520
     aatggctttt caacgactca aatgtcttga gcgaaagctt ttgagagaca aggataccgc      2580
     agaagcatat aagaacgaaa taacgaaact tttggacaaa ggttatgccg tccaattaac      2640
     agacattaac gttctcaact ctccaaaact gtggttttta ccacattttg ctgttatcaa      2700
     cccgaataag cccggcaagg ttcgacttgt attcgacgct gcggctactt gcaacggtac      2760
     gtccctcaat agcaacctgc ttactggccc agactggtca acgtctataa taggaatttt      2820
     gatacgattt cggctacatg cggtagcagt cgtagcagac attcgcgaaa tgttcaatca      2880
     ggtgagcatt acagaatgcg atactgcagc acaatgtttc ttatggagag atcttgacca      2940
     aaaaagagag ccatcaatat ttcaaatgaa agcaatgttg tttggaacta cttgctcacc      3000
     atttctggca caatttgtta aaaattacaa tgctagcaaa tttagagatg aacaacccga      3060
     cgcagtaaaa gctatattgg aaaatcatta cgtagatgat tatctcgatt ccaaacctag      3120
     tgcgtatgaa gtcatcaaca tcattaatgc aatcacgaaa atacactcaa aggctggatt      3180
     tgaattgtgt caatttatat caaacagcga cgaagtgatg caatccattc ccaaaactct      3240
     cagggcgaac aagtctacag caatgatagg ggaaaaaatg gacgtacagc aaaaggtgct      3300
     aggagtattg tgggacgcaa aaggcgactt cttcacgtac tccactacgg taatgcataa      3360
     agttacagat gatctgcttt ctggcaaagt tacaccaaca aagaggaatg tattgtcagt      3420
     agttaattcg ctatatgacc cattggggct catgacacca gtcacaatca aaggacgaat      3480
     ccttatgcga gatgtatggg agtctggaat aggctgggat gaccaaatca agggagatct      3540
     aataaacaaa tggcgaaatt ggataaaggc attaatatca attgagggca ccaaaattcc      3600
     aaggtgttat agctctaatc tgaacaatgc cgaccgcgtt gaaatgcaca tatttaatga      3660
     cgcaagtgca aaagcatatt cttcagttgc ctatatcaga tgcagctatg ttaaggagga      3720
     taaatgtcaa tttgatgtgt cactaattgc atctaaggca agggtttctc caatcaaaca      3780
     tataactatt ccgaaactgg aaacgatggc cgccgtactg ggatgccgtt tggctgaaat      3840
     gataagccac gaattacaaa tcaatataga tcaacgttac ttttggactg attcacgtac      3900
     ggttcttacc tggattaaca gcgataaacg tatggacgtt tttgtcgcaa atcgaatagg      3960
     tgagatttgt gaaaaatcgg taagatcaga gtggcgctgg ctatcaacaa atgaaaacat      4020
     cgctgacgtc ataacgcgtg acaacatatc agagcataaa cttcattggt ggttgacggg      4080
     acccgaattt cttcaaagac ccgaatccac atgggatctt caaaaaccca ttatagaaga      4140
     atacgaccaa acaggggtcg taatggtact tcaagagatg gaacatccaa tggatatact      4200
     catacaaaga atttccggat acaataaatt gattcgcagt actgcctgga ttgggagata      4260
     cataaataac ttaacgaaac ggttaaaagg taatcgaaaa ttgaatgagt taagtgtcgg      4320
     cgaaattgaa tgggcggaaa ctgtctggtg gaaggttgta cagcaacagc tatttcagga      4380
     cgatctaatc agcctaagga ccggaaagcc ttcttcaaaa ttgaggttgt caaaatattg      4440
     tgtatacctg gatgacaatg gcataatgcg agtggatagc agaatagaac gtgcaaaaga      4500
     ggtatcgaca tataccaaaa gcccagttgt tctcgatggc aaacatatct ttactcggat      4560
     gctgatcaat aaaattcatg tcgacgcaca acatgtcgga acacaggtag tagtacatca      4620
     gttcaggaag gcatactgga tgccaaaatt aaataggatc atcaggacga cgatcaatgc      4680
     ttgtgtttgg tgtaaacgca aaaaggcaaa accacaaaca ccaaaaatgg gatttctgcc      4740
     cgaagaaagg tttttcaccc acaaaaaacc atttacagca acaggcgtcg attacttcgg      4800
     tccattttac accaaagcag aaagaggaac tcgagcctca aaacacctcc gcaagcggta      4860
     cggagtaata ttcacatgcc tgackaccag agcaatcaac gtggagatag cccactccct      4920
     agacaccgat tcctgcataa tggcagttcg tagaatgatg gctcgacgtg gacctataca      4980
     aatcatctgg tcagataatg gcacaaattt tcgcggagca gcacgagagt tacaagaagc      5040
     cctagaggac ctggatgagt gtgccgtgaa agagtatatg gcaagtatta aaataatttg      5100
     gaatttcatt ccagcaaatg caccaaattt cggaggctgc tgggagcgac tagtaggctg      5160
     ttttaaacgg gcaattgaag caattttaac agtaaacgca aatcccagcg atgaaacgtt      5220
     gcaaacaatt tttatggagg cagaatatct ggtcaacagc agaccatata tactggaatc      5280
     tgatgacccc gacgacgaac ttggtctgtg tccaaacgat atttgtatcc cgcaaagctg      5340
     catactcctt ggcccaggca actttactcc caatacgatg gagaaacgag cttggagaat      5400
     ctcgcagtac cagatagact ctttctggaa acgtttcatt aaagaatatc ttcccacact      5460
     tatacatcgg gagaaatggc ataaagatgt gccaaacttg gaggtcgacg acatagttgt      5520
     tatgaaagac aacaccccgc gcggcgaatg gccgctcggt cgagttatga aagtttttcc      5580
     aggtgaagat ggagttgtac gcgtagtcga attgaagacg gctaaaaaca cgtatcgtcg      5640
     cccagtcaac cgtctatgca aaataggagt caagcgctac gatgagaagg atcgtgctca      5700
     aaaaagggat tccgcactag gggccgcta                                        5729
//
ID   BEL-19_DWil-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_DWil_;
KW   BEL-19_DWil-I; BEL-19_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1796-1796 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 208 BP; 84 A; 34 C; 28 G; 62 T; 0 other;
     tgtcgtagct tatttgtatc gtagtaaaag gcctcgatca atatcgatac atctagtatt        60
     taagtttcga ttatttaaat gtattctcag tttaacaata tacggccaca ctcgaaaaaa       120
     gaccacgccg ccaataagaa cattgtaaaa gcatactatt aagaaaaaat caaaataaag       180
     tttataagcg tctaaaatat aattaaca                                          208
//
ID   BEL-19_MoPha-I repbase;    DNA;    INV; 6023 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6023
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1145-1145 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           585..5792
FT                 /product="BEL-19_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MIITTMEALVKRRGQYKGRVTAFKTYITKITHRFPDA
FT                 TQALDETHRLEIRERLTIIREVYGKYDQVQAEIDELTVDEGDTMQYRETFE
FT                 EEYFNVVAQAEGLLARGKVTQRSLSAAMNEDRGAGAAQETHTPVTDDINFT
FT                 HNLPRHANQNIIFKTPGIRLPTIELPKFKGDVEEWLGFRDTFESLIHTNET
FT                 IDPIQKFHYLKAALEGSAAQIIKSLEFSAANYAIAWETISNRFNNKSLLTY
FT                 NHIRAIFSISSIKEESAIQLRNVIDTLNKHLRALNVLGQSTEHWDALLIYL
FT                 LSSKLDSITAREWEKEKADKELPTLEEFKVFLSSRANLLETLDLNKRSMHK
FT                 SKPSDHIKSKSFLVQRQECAVCTEAHHLSSCPKFLQFTPQKRAEALRTAKL
FT                 CLNCMKPGHFIKNCKGGTCRKCAGKHNTLLHFEKASESTGKAEAGKAEENN
FT                 NTSPSLLCSHNRTNDYHVILSTAIVFVEDSQGKKHKARAILDPGSQSSLVT
FT                 NRLCEELQLDKVKVMVNLEAVNGASCQVQHKCKLNIAACHNKYEFQLSCLV
FT                 IPEITGNLPNNKVNTQDLQIPSNIKLADPNFHVPARVDILIGADWFWNLLC
FT                 IGQIKLGKTQLTMQKTRLGWIAAGPMTSSCATSIRCHLSKSMSIEEQVAKF
FT                 WEIDEYSDQKILSQEEKECELHFSQTTKRNKDGRFIVSIPFKEDPSTLGES
FT                 YNGALRRLISLENKLQRNPELKEQYTAFLEEYKALHHMTKVDSTSNSSTVY
FT                 YMPHHSVVKIDSLTTKVRVVFDASATTDNGISLNHIQMIGSTLQDDLFSIL
FT                 VRFRSHAYVVASDIEKMYRQVLIAPEQRSLQRILWRQNPEDPIEVFELNTV
FT                 TYGTASAPYLATRCIRELAVETEQQWPDIARIIRQDFYVDDLLTGAESIEE
FT                 ARDIVHKISSVLNSAGFKLRKWIANEAAVIEDICTEDQNPNGINFKCGLPT
FT                 KILGLVWQAHQDMLVYSIEKLPSPKVSKRQILSEITRIFDPLGLLSPCLVL
FT                 AKILLQKLWMHKLSWDEAIPADLHSTWIAFRNQINDLNQIEIPRHVICRGY
FT                 TRIELHGFADAAQGAYGACIYIRSMVDQNTKQARLLCSKTRVAPLKQQTIP
FT                 RLELCAALTLARLTKKVTGSLNILFDKITYWSDSTIVLNWIQTQPSKLQVF
FT                 VSNRVAEIQELTDIRDWRHVPTEENSADLLSRGVFPNQLWQSRIWWYGPSF
FT                 LSRSEDEWPVTAQPEVPTMEMRRTVCAVRHIQPDKSFIFEISNNLNKLIRI
FT                 AAYCRRFIINCKNRGKVESGGLTAIELRNSLHNIAKIAQRESFPTETRILQ
FT                 QGGSITQGKLATLNAFIDKDNLIRVGGRLRNSEFPSDKKHPIVLLADHQFT
FT                 RLLFRSEHLNLLHAGPQLLLSSIREQFWPIGGRNLARKTVHGCIECFKNNP
FT                 THSKLPLGQLPRERVSQSIPFHNTGVDYAGPFIVRDRKGRGCKTSKAFVCL
FT                 FVCFATKALHLELVSDLTSEAFIAALRRFSARRGKPARIYSDNGTNFVGAN
FT                 RELKELAQLLTDNATSIEKTVNEIGISWHFIPAHSPHFGGIWEAGVKSTKH
FT                 HLKRVAGNAILTYEELYTLLVQIEAILNSRPLTPMSSDPNDLAPLTPAHFL
FT                 VGRSLTSPADPTLTDVPESRLSRWQLIQSLQQHFWKRWSKEYISELQQHAI
FT                 KTKLTDPIVEGAMVLIKDDNLPSLKWRLGRVVTIHPGKDNVARVATIKTST
FT                 GVTRIATAKLCPLPIE"
XX
SQ   Sequence 6023 BP; 1989 A; 1248 C; 1313 G; 1473 T; 0 other;
     ttggtccttc gagccggatc cacggagaaa aggccgtgga ttcaacgaaa tcgacataat        60
     caacgaaaga aacggtgacg acacgcgagg cagtcttggg ccttcggaac gatcgacatc       120
     gagacatcgt gcatggtgta caacaaggca agccatcttc atcgctaaat acgagattgc       180
     aagcacaacg caaggctcgt atcaactgca agacgcattt tttcggaatt tgcattacgg       240
     ccgtcgaata ttcgatcaag gccatagagc gagcatagag agcatacagc atccagcatc       300
     aagtaagcac atcgaccaat cagaggcgct gacagtggcg cgacaaccga gcatagaggg       360
     cgcacgagat ccagcatcga tcgagtgtag cagccaatca gaggtgtagt agcagccaat       420
     cagaggcata gtagcaacca atcagaggag cagcagggcg caacgagcga gaatagggag       480
     tacatcgagc gagctcatat agtgagtcag tgagcacatt cccatcctat cctaacccca       540
     attcggaatc atcaaaccag tagtagagtt cgcatacatt ttgcatgatt ataaccacaa       600
     tggaagctct cgttaaacgt cgcggtcaat acaagggtag agttactgcg tttaaaacat       660
     acatcactaa aatcacacac agatttccag atgcaacaca agcactcgat gaaacacaca       720
     ggttagaaat tcgagaacgt cttacgatca ttcgagaagt ttacgggaag tacgatcagg       780
     tgcaggcgga gatcgatgaa ctcacggttg atgaaggaga cacgatgcaa taccgagaaa       840
     cattcgaaga agaatatttt aacgttgtgg cacaagcaga agggttgctt gctcgcggta       900
     aggtgacgca acggtctctg agtgctgcga tgaacgaaga tcgcggtgcg ggggcggcgc       960
     aggaaacaca cacaccggta actgacgaca tcaattttac tcataactta ccgcgacatg      1020
     ccaatcaaaa tatcattttt aaaacaccgg gtatcaggct gcctacaatt gaattgccga      1080
     aatttaaagg tgatgtagag gaatggcttg gttttagaga tacgtttgaa tcgcttatac      1140
     atacaaatga gacaatagat ccaatacaaa aattccatta tttaaaggct gcgttagaag      1200
     gttcggcggc tcagattatc aagtctctcg agttttcggc tgccaactat gctattgctt      1260
     gggaaaccat ttctaatcgc ttcaacaata aaagtttgct aacttacaat catataaggg      1320
     ccatttttag cataagttca ataaaagaag aatcagcaat tcaattacgc aatgtgatag      1380
     atacattaaa caaacatttg cgagcactaa acgtattagg tcagtcgaca gaacattggg      1440
     atgctttatt gatatatttg ctttcgagta aacttgatag tataacagct agggaatggg      1500
     agaaagagaa ggccgacaag gagctcccta cactcgaaga gtttaaggtt tttctcagtt      1560
     caagagcgaa tctgttggaa acactagatt taaataaaag aagcatgcac aaatcaaaac      1620
     cgtcggatca tataaaatca aaatcgtttc ttgttcaaag gcaggaatgt gcagtatgca      1680
     cagaagcaca tcatttatca agttgtccaa agttcttaca atttacccca caaaagcgag      1740
     cagaggcttt aagaacagcg aagttgtgtc tcaactgcat gaagccaggt catttcatca      1800
     aaaactgcaa aggcggaacg tgtcgaaagt gtgctggcaa gcacaataca ttgttgcatt      1860
     tcgagaaggc ttctgagtca acgggaaagg ctgaagcggg aaaggctgaa gaaaacaaca      1920
     atacttctcc ttcgcttcta tgttcacaca acaggacgaa tgattaccac gtcattctgt      1980
     caacagcaat agtatttgta gaagatagtc aaggcaagaa acacaaggct cgtgcaatat      2040
     tagatccagg atcacaatcc agcttagtca caaatagact gtgtgaagaa ctgcaactcg      2100
     ataaggtcaa ggtaatggta aatcttgaag ccgtcaacgg cgcatcgtgt caagtacaac      2160
     acaaatgtaa gttaaacatt gcagcatgcc acaacaagta cgaatttcag ttgtcatgtc      2220
     ttgtgatacc agaaataaca ggcaatttac ccaataacaa ggtgaataca caagatcttc      2280
     agattccttc aaacattaaa ttggctgatc ctaacttcca cgtgccagcg agggtcgaca      2340
     ttctaatagg ggcagattgg ttctggaatc tcctttgtat aggccagatc aagctcggca      2400
     aaacacagct aacaatgcag aagacaaggt taggatggat agctgcaggt ccaatgacaa      2460
     gtagttgtgc aacgtcaata cgttgtcact taagcaagtc catgagtatt gaagaacaag      2520
     tggccaagtt ctgggagatt gatgagtatt ctgatcagaa gatactctct caagaagaaa      2580
     aagagtgcga gctccacttc tcgcaaacga ctaagcgcaa caaggatggt agattcattg      2640
     ttagcattcc attcaaggaa gatccaagca ccttgggtga atcatacaac ggagcattac      2700
     gacgattgat tagtctggaa aataaattgc aaaggaaccc ggaacttaag gaacaatata      2760
     cagcgtttct cgaagaatat aaggccttgc atcacatgac taaggtggac agtacctcaa      2820
     attcatcgac agtctactat atgccacatc attctgttgt gaagatcgac agcttgacaa      2880
     cgaaggtccg tgttgttttt gatgcatcgg cgaccacaga taatggcatt tcattgaatc      2940
     atattcaaat gatcggatca acattacaag atgatttgtt ttcaatactc gttagattta      3000
     gaagtcacgc atatgtagta gcatcagata tcgagaaaat gtacagacaa gtactcatcg      3060
     caccagaaca acgttcgtta caaaggatac tatggcgtca aaatcccgag gatccaatag      3120
     aagtattcga attgaacaca gtcacatacg gcactgcatc agcaccctat ctagcaacaa      3180
     ggtgcataag ggaattagca gtggaaactg aacaacaatg gcccgacata gcaagaatca      3240
     ttcggcaaga tttctacgta gatgatctct tgacaggagc agagtcaata gaggaagcaa      3300
     gagatatagt gcataagatt tcgagtgttc tgaattcagc aggattcaag ctccgaaaat      3360
     ggatcgcaaa tgaagctgca gtcatagaag acatatgtac agaggatcaa aatcctaacg      3420
     gaataaattt taagtgtggt ctaccaacga aaatccttgg attagtctgg caagctcatc      3480
     aagatatgtt agtttacagc atagagaaat taccgtctcc aaaggtatcc aaaagacaga      3540
     tactgtcaga aataactcgg atattcgacc cgttaggact tctgagtcca tgcttagtac      3600
     tagcgaagat tctactacag aaattgtgga tgcacaagtt atcatgggac gaagcaattc      3660
     cagctgactt gcattctact tggatagcat tccgtaacca gataaacgat ttgaatcaga      3720
     tcgaaatacc tagacatgtg atttgcaggg gctacaccag aatcgaatta catgggtttg      3780
     cagatgcagc acaaggagca tatggagcgt gtatatatat tcgctcaatg gttgatcaaa      3840
     acacaaagca agcacgattg ttatgctcta aaacaagagt ggcaccactt aaacaacaaa      3900
     caatacctcg cctagagctc tgtgcagcgc ttacacttgc acgcttgaca aagaaggtga      3960
     caggatcttt gaatatattg ttcgacaaaa ttacatattg gagcgattct acaatagtac      4020
     tcaactggat acaaactcag ccaagcaaac tacaagtatt tgtatcaaac cgggtcgcag      4080
     aaatacaaga actaacggac attcgtgact ggcgacatgt gccaacagaa gaaaattcag      4140
     ccgatctact ttcgcggggt gtattcccta atcaactgtg gcaatcaagg atttggtggt      4200
     atggtccatc atttttgtcg agatcagaag atgaatggcc tgtcacagct caaccagaag      4260
     ttccaacaat ggaaatgaga cgtacagttt gtgcagttag acacattcaa ccagataaat      4320
     cgtttatttt tgagattagt aacaatctaa acaagttgat tcgaatagca gcatattgca      4380
     gacgctttat aattaattgc aaaaatcgag gtaaggtaga gtcagggggc ctgaccgcga      4440
     tcgaactaag gaactcatta cacaatattg caaagattgc tcaaagggaa tcttttccaa      4500
     cagaaacgcg aatacttcag caaggtggtt ccatcacaca aggaaaattg gcaacactca      4560
     atgcatttat agataaggac aatctcattc gtgtaggcgg gagattaaga aattcggagt      4620
     ttccttcaga taaaaaacat cccatagttt tgttggcaga tcatcaattt acaaggctac      4680
     ttttcagaag cgaacattta aatttattgc atgcaggacc acaactactc ctaagctcaa      4740
     tacgcgaaca attctggccg atcggaggca gaaatctcgc ccgaaaaact gtacacggtt      4800
     gcattgaatg tttcaaaaac aaccccacgc attcgaaact tccgttggga cagctgccaa      4860
     gggagcgcgt atctcagtcc atccccttcc acaatacggg ggtggattat gcaggtccat      4920
     ttatagtaag agatagaaaa ggaaggggtt gcaaaacaag caaggcattt gtgtgtttgt      4980
     tcgtttgctt cgcgaccaag gcacttcatt tggaattggt gtccgaccta acttcggaag      5040
     cgttcatcgc agcacttaga cgtttttcgg ctagacgggg taaacctgcg cgtatatatt      5100
     ccgataacgg aacgaatttt gtcggagcaa atagagaact aaaagagttg gctcaattat      5160
     taacagataa cgctacatct atcgaaaaaa cagtaaatga aattggcatt agttggcact      5220
     tcatacctgc tcactcacca cacttcggtg gtatttggga ggccggagta aaatccacca      5280
     aacaccattt gaaacgagtg gcaggtaacg cgattttgac atatgaggaa ttatacacac      5340
     tattagttca aattgaggcg atactaaatt ctcgtccctt gactccaatg tcatccgatc      5400
     ctaacgacct cgctcccctc actcctgctc actttctcgt tggtcgttcg ctcacttcgc      5460
     cagcagatcc tacactaact gatgttccag aatccaggtt gtccaggtgg caactaatcc      5520
     aaagtcttca acagcatttt tggaagcggt ggagcaagga atacatttct gaactacaac      5580
     aacatgcaat caaaacgaaa ttgaccgatc ccatcgtgga gggcgcgatg gtgctcatta      5640
     aagacgacaa cctgccttca ctcaaatgga ggctcggacg tgttgtaaca atccatccag      5700
     gaaaggacaa cgtagccaga gttgctacca tcaagacatc gacaggagta acgcgtatcg      5760
     cgaccgcgaa gctttgtccg ttaccgatag aatgaacaat gtttaaaaat attagtttag      5820
     ttgcgtttac gacataagta ctattattac agtgttagat tataagttgt ttatttactc      5880
     atcacattgc tataatccgc gtaaccttag tattaagcta taaatttcac gaaatttgtt      5940
     tatgcgacat agcatgattt agtcacaagt gtgcaatgaa ccgattaatt tgtattgaaa      6000
     gtacctttca atgtcggggg gta                                              6023
//
ID   BEL-19_MoPha-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-330
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1085-1085 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 330 BP; 106 A; 72 C; 63 G; 89 T; 0 other;
     tgttgagatt atttgctttg ttgttagtat tttcttttct tcagtttgtc cacatataca        60
     cgcacacaca cacacacaca catatacctt taatgttaat acaattcaag cgttcaacca       120
     actcattcat atttgatatg ttgcgctcgc gaaatatcgt tgcgttggta tgctcgcgca       180
     accggaaacg aaggaagagg aagaacggag gagacgagac aagatggcga tagatctccg       240
     aaaacgcaac gtgcgtcttg tgcgaattca ataaacccaa agtgaaatcc agtgaaaata       300
     cagtccactt taatcgacca ttacgcaaca                                        330
//
ID   BEL-19_SiCu-I repbase;    DNA;    INV; 5890 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5890
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4993-4993 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           147..5858
FT                 /product="BEL-19_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MDQNQENPSGHPILDPQDDEGGVRRSSRPNLGQPPKL
FT                 FGDWTMGDGSFLTSTKVTVANGTNMTRTTYVASPNAVVKKAEDNVSVSSHK
FT                 TAGSLVDLLDEEIAKVEKTVNDKISFLKSLKEMRDEQQSKLQSEQQLSDVA
FT                 DEEEEEEADRDSWKPQAIANAVGKLTGNYVATPHVPGNVPVRPPRRMKSEP
FT                 KSQAVPLTTEKVNKGPFVDAWVKQTEVPHQGQDAGHGGNPPLGGGYSSNAF
FT                 AAGAVGAATVPPPLPAVSGVDALASALVQALQIQSKNTERFVARQSHGSSL
FT                 PTFSGNPLDWPLFEHHYRQSTDDCGFTPAQNMTRLEKALRGEARKTVRALM
FT                 IVPNNADEVIRTLQQRYGRPEYIIQALVDIARKTPTPKESKLSTIVDYSIA
FT                 VRNLVTTVKTLNERSYLLNPQLLQELVEKLPDQFKFQWGMHVLDLRRRVTL
FT                 EDFGVWINRASEAASMVTTPKLNLREKKEESNFNATEDPVPDDKPKPAGQV
FT                 AKTTTAAVQRPCGACGKDGHQIGGCGDFQKLPVNERWEFVKAKNRCFRCLR
FT                 AGHSLSSCKSKSSCRIEGCNRRHHTLLHGSSSSAPSRKEPDKEKDKVEEIN
FT                 ASVNSFAGSSLLKILVVTLYGPAGEEVTANALLDEGSTVTLICSRVAEKLG
FT                 LSGSTDPLRIRWTNGASQEDPSSRKVDCWIGPVGGGEKFKLKKMRTVTNLD
FT                 LPAQRTDLREIVKLYPHLQSTKLKYLPGEKPLILLGQPHIHLSVAREIIEN
FT                 DDISPMISKTKLGWVMHGPSQGPAVEEATFSCHHETDDDLLHDLVKESFAL
FT                 ESIGIRTSVSTRFGEDEEAKAMMDKITCRVGDRWQTGLLWRKEAVTLPPSR
FT                 DVAVRRLHSIERKLRRNDDIAKQYRDKIDHYLTAGYARRLSPDELKQPSNV
FT                 EWYLPHFDRMHPNKPGKIRIVFDAASRASGVSLNDYLLTGPDLLVSLPGIL
FT                 LMFRQRKFAISGDIGEMFHQVRIRPEDCPAQRFLWKKDGEDHASTYQLEVM
FT                 MFGSVCSPFCAQYVKNRNAMEFQDEYPKAAEAIVQKHYMDDYLDSMDSEGE
FT                 AIKVAKEVTEVHKKGGFIIGKWISNSRKIVEELTGEAAVVESKNLAEWSEI
FT                 PTERALGLHWIPEEDSFTFRVNLQRAGAGVATGEVIPTKRAVLRLVMLVWD
FT                 PLGFLGHYMIKARILLQDLWRTKIGWDDQLTAKQFKRWKIWIEDLPKLVKV
FT                 RIPRCYSSYASSSPEVTLHIFADSSEAASCAIAYLRVREENEEISVAMVMA
FT                 KTRVAPVKPCSVPRLELTAALIASRLGKFILESLNIKIHGVTYWTDSMTTL
FT                 RWIRAEARKFQQFVAVRVGEIQENSNITQWRWVPSAENPADDGTREGRPDL
FT                 SENSRWWNGPIFLKLAEENFPVEPGGCSKEADVDGMELRREFLAVVVETPK
FT                 FALPNVERFSSYWRIVRSTAWVLKFLERIKTKGDVSSLLDIPKAEYLLWKR
FT                 SQWEAYPQEMQMLSNGESVRRSSQLFQLSPMLDEFGVLRMKSRLAAAEKRG
FT                 IRCPVLLHPKEKLTRLLLQHYHQIFLHAGEDLVINEIRQKFWIPQIRTAAR
FT                 KVIRECIICRKKRIQAKPPMMGDLPGFKFQPQPRAFNICGMDYFGPLDVTV
FT                 GRRHEKRYGVLFTCMNTRAVHLEVAHSLTTDSCILAIRRMISRRGQPKQMY
FT                 SDNGTNLRGADKELRKALQELDQEKINSELSILGMDWHFIPPSAPHMGGSW
FT                 ERLVRSVKTALGVILKCRAPRDEVLLTVFAEAEATVNSRPLTDVPVDPGSQ
FT                 EALTPFHFLIGTSSTLRQPGLFDDKEADMQKQWRKSQALANMFWKRWMREY
FT                 IPTLQRRAKWHQSQPPVQVGDLVVVLDESLRRNTWPMGIVTQTFPGSDKIA
FT                 RVAEVRTASGVYRRPVIKLGKLDVRAADKQD"
XX
SQ   Sequence 5890 BP; 1606 A; 1380 C; 1659 G; 1244 T; 1 other;
     agtggtcctt cgaggtcaat aacccgctgt ggaaatacag accaagcggt cctctgaagt        60
     ctacaattcg tctttgaaat acagttgtga acccacaggg tcatactgat ttcagttgtc       120
     agcttagcca acagttgaac aacaaaatgg accaaaacca ggagaatcct tctgggcacc       180
     cgatcttgga tccccaggat gacgagggag gagtacgtcg tagtagccgt ccaaacttgg       240
     gccagcctcc aaagctcttt ggggattgga caatgggaga tggaagcttc ctcaccagta       300
     caaaggtcac tgtcgccaat ggaacaaata tgacgaggac gacatatgtt gcgtcgccaa       360
     atgccgttgt taagaaggcg gaggacaacg tctcggtctc ctctcataaa actgccggtt       420
     ccttggtgga cttactggat gaagagatag ctaaggtgga gaagacggta aacgacaaaa       480
     tatcattcct caaatcattg aaggaaatga gggatgaaca gcagtccaaa ctccagagcg       540
     agcagcagct gagcgacgtg gcggatgagg aggaagagga ggaagcggat cgggactctt       600
     ggaaacccca ggcaattgcc aacgcagtcg gcaaattgac tgggaattat gtcgccactc       660
     ctcacgttcc tgggaacgta cctgtaaggc cgccaagaag gatgaaatcc gaaccgaagt       720
     cgcaagctgt tccgttgacc accgagaagg tcaacaaggg tccatttgtg gatgcttggg       780
     tgaagcagac ggaagtccct catcaagggc aggatgcagg gcatggagga aatccgcctc       840
     ttggaggagg atacagctcg aacgcgtttg cagctggagc ggtgggggcc gccacagtac       900
     caccgccttt accagctgtc tctggagtgg atgcactggc ctcagcactg gtccaggctc       960
     tacaaatcca gagcaagaac acggaaagat ttgtcgcaag acaaagtcat gggagctcac      1020
     ttccaacatt ctcggggaat ccactggact ggccactttt tgagcaccac taccggcagt      1080
     ccactgacga ctgtggattc acccctgcgc agaatatgac caggctggag aaggcgttac      1140
     ggggggaagc acggaagacg gtgagagctc tcatgatcgt gccgaacaat gcagatgaag      1200
     tcatcaggac gctgcagcaa agatatggtc gtccagagta catcattcaa gctctggttg      1260
     acatcgcccg gaagactccc acgccaaaag agagtaagct gtctactatt gtggactact      1320
     ctatcgcagt aaggaatctg gtcacgacgg tcaagacatt gaacgagcga agttacttgc      1380
     tcaaccccca gctactccaa gaattggtgg agaagctgcc ggatcagttc aagttccagt      1440
     gggggatgca tgtcttggat ctgcgtaggc gtgtaacctt ggaggatttc ggcgtgtgga      1500
     tcaacagggc gtcagaggca gccagcatgg tgacgactcc caagcttaac ttaagggaga      1560
     aaaaagaaga gagcaacttc aatgccactg aagatccggt tcctgatgat aagccaaagc      1620
     cagcggggca agtcgcgaaa acgacaacag cagcagttca gagaccctgt ggagcttgcg      1680
     ggaaggatgg gcaccaaatt ggaggctgtg gcgattttca gaaattgcca gtaaatgaac      1740
     gttgggagtt tgtaaaggcg aaaaacagat gttttcgctg tttacgtgcc gggcatagtc      1800
     taagctcgtg caagtcgaaa tcttcatgtc gaattgaagg atgtaaccga agacaccaca      1860
     cgctgctcca tgggtcctcc tcctccgctc cttctcgaaa agaacctgac aaggaaaagg      1920
     ataaggtgga ggaaatcaac gcctctgtga attcctttgc tggatcaagt ctgctgaaga      1980
     tcctggtggt cacgttatat ggacctgctg gagaggaggt gaccgcgaat gckttgctcg      2040
     acgaggggtc aaccgtgaca ctgatctgct cacgtgttgc tgaaaaactt ggtctttccg      2100
     gttcaaccga tccgctcaga atccggtgga caaatggcgc ttcacaggag gacccctctt      2160
     cccgaaaggt ggactgctgg atcggccctg ttggaggagg agaaaaattc aagttgaaga      2220
     agatgaggac ggtgacaaat ctcgacttgc ccgcccagcg cacagatctg agggagattg      2280
     tcaaactcta cccacacttg cagtcaacta aactgaagta cctgccggga gagaagccac      2340
     tcatcttact gggccagcca cacatacatt tgtctgtggc gagggagatc attgaaaatg      2400
     acgacatatc accaatgatc tccaaaacta agctgggctg ggtgatgcat ggaccaagtc      2460
     aaggacctgc agtagaagaa gctacatttt catgtcacca tgaaactgat gacgacctcc      2520
     tccacgacct ggtgaaggaa tccttcgctt tggaaagtat tgggatcagg acatcagtct      2580
     ccactcggtt cggtgaagat gaagaggcga aggccatgat ggacaagata acctgccgag      2640
     ttggagaccg ctggcaaact gggttgctgt ggaggaaaga agccgtcaca cttccgccaa      2700
     gcagagatgt cgctgtccgc cgcctccatt ccattgaaag gaaattaagg aggaatgatg      2760
     acatagccaa gcagtacagg gacaaaatcg atcattacct gactgccggt tatgccagaa      2820
     gactttctcc agacgaactg aagcagccgt caaatgtgga atggtacctg ccgcattttg      2880
     acaggatgca cccaaacaaa cctgggaaaa tcaggattgt atttgatgcc gcctccagag      2940
     ccagtggtgt gagtctaaac gattacttgc tcactggacc tgacttactc gtttcactgc      3000
     cgggaattct cctcatgttc cgtcagagaa aatttgccat tagcggggac attggggaga      3060
     tgttccatca agtcaggatt cggccggagg actgccctgc acagaggttc ctttggaaga      3120
     aagatgggga ggatcatgct tcaacgtacc aacttgaagt catgatgttc ggttctgtgt      3180
     gctcgccctt ctgcgcacag tacgtcaaaa accgaaacgc catggaattc caggatgagt      3240
     acccgaaggc agcggaggca attgtccaga agcattacat ggacgattac ctggattcca      3300
     tggactctga gggggaagcc atcaaagtgg ccaaagaagt taccgaggtg cacaagaagg      3360
     gagggttcat tattggcaaa tggatctcaa actccaggaa gattgtcgaa gagcttactg      3420
     gagaagccgc cgtggtggag agcaagaatc tggcagaatg gtcagagatc cccacggaac      3480
     gtgcccttgg tcttcactgg atcccggagg aagactcgtt cacttttcgt gtgaacttgc      3540
     aacgtgctgg agctggtgtc gccactggag aggtcatccc aaccaaacgt gcagttttgc      3600
     gtttggttat gctggtgtgg gacccactcg gttttctggg ccactacatg ataaaagcaa      3660
     gaatattgct ccaagacctc tggagaacga agatcggatg ggatgaccaa ttgaccgcca      3720
     agcaatttaa aaggtggaaa atatggatcg aagacttacc aaaattagtt aaggtgagga      3780
     ttccaagatg ctactccagt tacgcaagct ccagtccaga ggtcacgctt cacattttcg      3840
     ctgacagtag tgaagccgcc agctgtgcca tcgcctacct ccgggtgaga gaagaaaacg      3900
     aagaaatttc ggttgccatg gtgatggcga aaactcgtgt cgcgcctgtc aaaccctgtt      3960
     ccgtgccgag gttggaacta actgcagccc ttatcgcctc cagactggga aagtttattc      4020
     tggagtcgct gaatatcaag atccacggag tcacgtattg gacggactcg atgacgacat      4080
     tacgttggat cagggccgag gcgagaaagt tccagcaatt tgtcgctgtt cgagtaggcg      4140
     agattcaaga gaactcgaac attacgcagt ggagatgggt gccctctgcg gaaaatccgg      4200
     cggatgacgg gacacgagaa ggaagaccag acttgagtga aaattcaagg tggtggaatg      4260
     gccctatttt cctcaaactg gcggaggaaa actttcctgt ggaacctggt ggctgttcta      4320
     aagaagcaga cgttgacggc atggagctcc ggcgggaatt tttggcagtt gttgttgaaa      4380
     cgccaaaatt tgccttgcca aacgtggagc gattctcaag ttactggaga atcgtgagga      4440
     gcacagcctg ggtccttaaa tttctggagc ggatcaaaac aaagggggac gtttcgagct      4500
     tactggacat cccaaaagcc gagtacttgc tgtggaagag gagccagtgg gaagcctacc      4560
     cacaagaaat gcagatgctc agtaatggag aatctgtgcg gaggtccagt caactcttcc      4620
     agctgtcacc aatgctggac gagtttggcg tattacgtat gaagtctcgg ctcgccgctg      4680
     cagagaagag ggggattcgc tgtccagtgt tacttcatcc gaaggagaag ttaactaggc      4740
     tcctgctgca gcactatcac caaatatttc ttcacgccgg ggaagatttg gtgataaacg      4800
     agatccgcca gaaattttgg atcccacaga taaggaccgc agcaagaaaa gtgatacggg      4860
     aatgtatcat ctgccgcaag aagaggattc aggcgaagcc tccaatgatg ggtgaccttc      4920
     cgggatttaa gttccagcca caaccaaggg cctttaacat ttgtgggatg gactattttg      4980
     gtccactgga cgtgacagtc ggaaggcgcc acgaaaaaag atatggggtc ctcttcacgt      5040
     gtatgaacac acgcgctgtt cacctggagg tcgcccacag cctgacgacc gacagctgca      5100
     tcctggccat ccgaagaatg atctccagaa ggggacaacc caagcagatg tacagcgaca      5160
     atggtaccaa tctgcgaggg gcggacaagg agttgcggaa ggcgctgcag gagttggacc      5220
     aggagaagat aaattccgaa ctgtccattt tggggatgga ctggcacttc attcccccct      5280
     ctgctcctca tatgggggga agttgggaac gcctagttcg gtccgtgaag acggccctgg      5340
     gagtcatttt aaaatgccgt gctcccaggg atgaagtact cctgacggtg ttcgccgaag      5400
     cagaagcaac ggtgaacagc cgaccattga cggatgtgcc agttgaccca ggatctcaag      5460
     aggctctcac cccctttcat tttttgattg ggacatccag cactttgcgg cagccgggct      5520
     tatttgacga taaggaagcc gacatgcaga agcaatggag gaaaagtcaa gccctggcaa      5580
     acatgttctg gaagcgctgg atgagggagt acatacccac tttgcaacgc cgcgcaaagt      5640
     ggcatcagtc gcagccacca gtccaggttg gggatcttgt ggtcgtcctg gacgagagcc      5700
     tacggagaaa tacttggccg atgggaatag ttacgcaaac attccccgga agcgacaaga      5760
     ttgctcgagt agccgaagta aggaccgcgt ctggagtcta ccgaagaccg gttatcaagc      5820
     tcgggaaact ggacgtgagg gcagctgata agcaagatta ggattgatat tcatcaatca      5880
     gggggaagaa                                                             5890
//
ID   BEL-19_SiCu-LTR repbase;    DNA;    INV; 653 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-653
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5016-5016 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 653 BP; 179 A; 112 C; 110 G; 252 T; 0 other;
     tgttgctgcc aaattatgta gatagttcaa ttttcaatga atttatgttt tcattttgct        60
     atattttgaa tattattgta aattttggag tttttctttc tctgctttct tttctccaca       120
     atatgttaac gatttccggc aagaaagcag taattgtctt atttgtttaa tttttcggtc       180
     ttcatgaaat ttcatgaaga agttcgagtt aattttcttt gtttgtattc taataattct       240
     atttttagaa cgattgtaca atttataccg gaagttaaga aattttcttg tcatttctcc       300
     cggaagtcag aggggtataa ataccgggag aaaatcttag taatcattca ttcagtcttg       360
     gacagccagt ccagatcatt ctgttttgga cagccagtcc tacaacatca ttcagtcttt       420
     ggcagccagc cttagaaaat aactagtgac gtcaactgct agttacttat cacaataaaa       480
     tcgctaaatt gtgttataac tttgtcttct aaacatcgtt attatttgtc ataaaattgc       540
     atccttttgc ctacagggat tgcaatagtt ccccagtcac ggggatggtc cttctatcat       600
     agaagtcatt tgttgccatt cgtattttta acgctattga aggcggggca aca              653
//
ID   BEL-19_SpEx-I repbase;    DNA;    INV; 5901 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5901
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6899-6899 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           601..5790
FT                 /product="BEL-19_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEGHINVLKDLQSVMTRAYTNYKKSPKDRLTVEYIET
FT                 RLELLEKDWSSFKDTKSQLYRTYKLEDISQKVMDIYDTTEDTYITYKCAMK
FT                 STLNKLNVKESVAQQGSESNTMSKATCSYFKLPKIAIPTFSGKYSEWTTFY
FT                 DLFTSLVHNNPSLDNVQKLHYLKGHLTGEAEQLIRHTPITDANYSQCWSQL
FT                 EKRYANKKYLTNCILKRLFSQKRLLVESASGLKDLLDTTTDCLSALTNLKI
FT                 DVTTWDVIIIHILTFKLDNETRKQWELSISNDSSNELPTFEQFKKYIEGRF
FT                 RALEFIEPKKAHQGSNISHAHSPKVMLATKTSDIRCEYCSESHKLCFCKKF
FT                 AKQSVPNRREFVAKNKICFNCLGSNHTIYDCKKQMSCRICKKRHHSLLHLI
FT                 RAANTENDNPDAATTSVVDSNSTNDSQIVACLSTGKNSKPSQVLLATALIK
FT                 AESKTGQFITVRALLDQGSQACFITEATVQLLRLKKIPVRGVITGLGNNSS
FT                 TTAKYMVTLTIKSTIDDNFQLIINAYVLSKITSYLPEKSIDISTDWISIHG
FT                 LSLADPNFITPNRIDILLGADAYGSILKEGIVKSPTGTLIAQNTALGWILS
FT                 GVAVNLNDGEMQHLPKNISVNCAHINEDNLLRKFWEIEEQTSSKRILNPEE
FT                 QRCEELYTQTTVRDDDGRYIVRLPFRDDDPACKGGGSRYIAEMRLKSLEKR
FT                 LSKDTCLKEKYIGVINEYLQLGHLRPVKEGDSKKDQAVYLPHHAVVRDDKT
FT                 TTKVRVVFNASEKNKKGISLNDTLMVGPTLQADLRHTVLRWRTHSIGLVAD
FT                 IIKMYRQIRIAEEDAMYQRILWRDNPDKPIRDYELVTVTFGTASAPYQAVR
FT                 TLHQVAYDERNNYPLAADITLNSFYMDDLMTGCDNVQEGIEIFKQMNLLLK
FT                 KGGFILQKWNSNNPEIMKIIDQIKETEGEVEQTGPVKEENKDLEIKLDSTI
FT                 KILGLTWNRDDDSFQYTVNLSPLTTAPVTKRQVISDIARLFDPLGWLAPSV
FT                 VLAKAFIQRLWLAGVSWDEALSKELVQEWNTYREELLLLTKVRIPRWLRSK
FT                 SMDVLELHGFSDASKIAYSAVVYLRVLNAVDGVHVSLLVARTRVAPVKQVS
FT                 IPRLELCGAVLLSKLLIEAADVLSIPIERVKAWTDSTVVLSWLNSHPSRWK
FT                 TFVANRTSEILSTMKASQWFHVKTKDNPADCASRGLLPSALIDHQLWFRGP
FT                 SFLSNQMIEYNRPTELHSNLEESIKIHVSVVPETLSIFERYSSLQKLLKVI
FT                 AYCRRFLKCSISNKYLQKTEIESALECCIKQTQREVYKEEYLQLKEKGYLQ
FT                 KKSSKLQSLCPYLDVKGIIRVQGRLERASIEEQTKHPIVLPGSSHLTKLIV
FT                 ADAHLKTLHGGPQLMTNYLRAAYWIIGVKNLVKGHVRRCVVCVRNKASTKT
FT                 QLMGSLPSIRCLPARAFLHSGVDYAGPVNIRTSKGRGHHSYKGYICLFVCM
FT                 STRALHLEVVSDMSTQSFLAAFRRFVSRRGHCSKIWSDNGTTFVGAAKELK
FT                 QLASNEAMLADHMASSGTEWHFIPPHSPNFGGLWEAGVKSTKYHLKRVIGD
FT                 STLTYEELATLLAQIEGCLNSRPISIVNTTDPGAPLPLTPAHFLIGEPIVH
FT                 APDASFENSTVSSLTRWQHIQKMLQSFWKRWSQEYLTNLMHRYKWSNKVPE
FT                 PNIGDIVLIKEDDLPPSRWLLGRIIEKHPGRDNLTRVVTLRTKSSTIKRPT
FT                 SRLCILPVAD"
XX
SQ   Sequence 5901 BP; 1950 A; 1102 C; 1232 G; 1617 T; 0 other;
     ttggtccttc gagccggatc agacacagta ttgtctgaat ttttgagttc accttccgtg        60
     ccagtggcac acgctcaagt tctcgcagtg gattgctgca gcaagagtac tgggcacccg       120
     gcagaagcat cgcccatcaa gctggcaagc tcagttgccg cggagttcat caagtggccg       180
     cagagggcgc cacattaatc atcgcagtcc attcttcaag aggtcctcca acaagctgta       240
     gcagtgacag cagcctacct tgaagttccg agtgacgccg cagagggcgc catcatcgcc       300
     atcagtgttc agtgagtgaa gtgaaagatt gtaagtacaa taaaatttaa ataataattg       360
     cagcacagaa caatctttgc caagtaaaat tgaactttat atcaaagaca attttaactt       420
     taaggaattg taaatatatt ttagacttag tgaaatttgt gcatattagt taaggactta       480
     gaatagtttc aataaaaacg gaggaacggg gaacctatgc ccgaaatccg cttgaatttg       540
     tcaaaaacac ttgtgaaatt tattcaataa tttagaactt agaagattgc gattgtaaaa       600
     atggaaggtc atataaacgt tttgaaggat cttcagagtg tcatgacaag ggcatacact       660
     aattataaga agagtcctaa agacagatta actgttgaat acatagaaac tagactcgaa       720
     ttattagaaa aagattggtc atctttcaag gataccaaat ctcaacttta tagaacctac       780
     aaattagaag atatcagtca aaaggttatg gatatctatg acactactga agatacctac       840
     attacttata aatgtgctat gaaatcaaca ttaaacaaat taaatgttaa agaatctgta       900
     gcacaacagg gtagcgaatc aaacacaatg tctaaggcaa catgttcata ttttaagcta       960
     cctaaaattg caattcccac gttttcgggg aaatatagtg aatggaccac attttatgat      1020
     ttgtttacct ctttagttca taataatcct tccttagata atgtacaaaa gcttcattat      1080
     ctgaaaggac atcttactgg tgaagctgaa caattaataa ggcacacacc tatcacagat      1140
     gctaattaca gtcaatgttg gtcgcaacta gaaaagcgtt atgctaataa aaagtatctc      1200
     actaattgca tcttgaaaag attattcagt caaaaacggt tgcttgtaga atcagcgtca      1260
     ggtttgaaag atttgttgga tacaacaact gattgtttga gtgctttaac aaatttaaaa      1320
     attgacgtta ccacatggga tgtcataata attcatatct taactttcaa acttgataat      1380
     gaaacgcgca aacagtggga acttagcatt tctaatgact ctagcaacga gttgcccacc      1440
     tttgaacaat ttaagaaata tatcgaaggt cggttccgtg cattagagtt tatagagcca      1500
     aagaaagctc accagggcag taatatttca cacgctcata gtccaaaggt aatgttagcg      1560
     acaaagacat ccgacattcg ttgcgaatac tgttctgagt cgcataaact ttgcttctgt      1620
     aagaaattcg cgaaacaatc tgtaccgaac agacgtgaat ttgttgcaaa aaataaaatt      1680
     tgttttaatt gtttaggcag taaccataca atttacgatt gcaaaaagca aatgtcgtgt      1740
     aggatttgca aaaaacggca tcattccttg ttacatctca tcagagccgc caacacagaa      1800
     aatgataacc cagatgctgc aactacctct gttgtcgata gtaattcaac taacgatagt      1860
     cagatagttg cttgtttatc cactggcaaa aactctaagc caagtcaagt tttgttggct      1920
     actgcgctaa tcaaagcaga gtccaagaca ggtcagttta taactgtccg tgccttactt      1980
     gatcaggggt ctcaggcttg ttttattact gaagccacag tgcaattgct aagactaaaa      2040
     aagattcctg ttcgtggtgt tattactggc ctagggaata atagttcaac tacagcaaaa      2100
     tatatggtta ctctgacaat taaatctaca atagatgaca atttccaatt aataataaac      2160
     gcctatgttt tatccaagat cacgtcatac ttaccagaaa agagcataga tataagcact      2220
     gactggatca gtatccatgg cttatctcta gcggatccaa atttcattac tcccaacaga      2280
     attgatattc ttttgggagc ggatgcctat ggttctatcc tcaaggaagg catcgtgaaa      2340
     agtccaactg gtactctcat cgctcagaac actgctctag ggtggatcct ttctggggta      2400
     gcagttaatt taaatgatgg ggaaatgcag catctgccta aaaatataag tgtcaattgt      2460
     gcacatatta acgaggacaa tcttctaaga aaattttggg agatcgaaga gcaaacaagt      2520
     tcaaaaagga tattaaatcc tgaagagcaa aggtgtgagg agctgtatac ccaaactaca      2580
     gtaagagatg atgatgggag atacattgta cgcttaccat ttcgggatga tgaccccgct      2640
     tgcaagggtg gcggttcgcg ttatattgct gaaatgagac tcaagtcatt agaaaaaaga      2700
     ttgagtaaag acacatgctt aaaagagaaa tatataggag taataaacga gtacttacaa      2760
     ttaggacatc ttcgacctgt aaaggaaggg gacagtaaaa aagatcaagc ggtatactta      2820
     ccacaccacg ccgtagtaag agatgacaag acaactacaa aggttcgggt ggtatttaat      2880
     gcctctgaaa aaaataaaaa aggtatttcc ctgaatgata cgctgatggt cggaccaact      2940
     ctacaagcgg acctaagaca tacggtttta aggtggagga cacactcgat tggtttagtg      3000
     gccgacataa taaaaatgta tcggcagatt agaatcgctg aggaggacgc catgtaccaa      3060
     cgaattcttt ggcgagacaa ccctgataag ccaatcagag attatgagct ggtcactgtg      3120
     acttttggta ccgcttcagc tccatatcaa gcggtaagga ctcttcacca agtcgcatat      3180
     gatgaaagaa acaattatcc tttagcggca gatataacat tgaatagttt ttatatggat      3240
     gacctaatga ccgggtgtga caatgttcaa gaaggcatag aaatatttaa acagatgaat      3300
     ttgttactga aaaaaggagg atttattctg caaaaatgga acagtaacaa tccggaaatt      3360
     atgaaaataa tagatcaaat aaaggaaaca gaaggagaag tagagcaaac aggtcctgta      3420
     aaggaagaaa ataaggattt agagatcaaa ttagatagta caataaaaat actaggtctt      3480
     acctggaacc gggacgatga tagcttccaa tacaccgtga atctttctcc gctgacgaca      3540
     gcgcctgtaa ctaaaagaca agttatatct gacatagcca gattgttcga tcctctaggc      3600
     tggttagcac caagtgtggt gttagcaaag gcttttattc agaggttatg gcttgcaggt      3660
     gttagttggg atgaagcatt aagtaaggaa ctagtacaag agtggaatac ttaccgtgaa      3720
     gaactgttac ttcttaccaa ggttcgaatc cctcgatggc ttcggagtaa atctatggat      3780
     gtgttggagc ttcatgggtt cagtgacgct tccaagatcg cgtactcagc agttgtttac      3840
     ttgcgagtac taaatgccgt agatggagta cacgtttcgt tgctagtagc acgaactaga      3900
     gtggctcctg tcaagcaggt cagcatacca cgtctagaat tgtgtggagc agtcttgttg      3960
     tcaaaattat tgattgaggc agcagatgtt ctcagtattc ctatagaacg agtaaaggcc      4020
     tggactgatt ccactgttgt attgtcgtgg ctgaacagtc accctagtag gtggaaaaca      4080
     tttgtagcaa atcgcacctc agaaatactg tcaaccatga aggcatcaca gtggtttcat      4140
     gtgaaaacta aggacaaccc tgccgactgc gcctcaagag gattgttgcc tagcgcatta      4200
     atagaccatc aattatggtt tcgtgggcct tcattcctca gtaatcaaat gattgagtac      4260
     aacagaccta ctgaattgca tagtaatttg gaagaatcca ttaaaataca tgtgtcagta      4320
     gtgcctgaaa ccttatctat ttttgaacgg tattcttcgt tacaaaagtt actcaaagtt      4380
     attgcgtatt gtcgacgatt tttaaaatgt agtataagta ataaatattt acaaaaaact      4440
     gagatagagt ccgctctaga atgttgcata aaacaaacac agagggaagt atataaagaa      4500
     gaatatttac aactaaagga aaagggctat ttacaaaaga agtctagcaa acttcaatcg      4560
     ttatgtcctt atttagatgt gaagggcata attagagtgc aaggtagact tgagagggct      4620
     tcaatagagg aacagaccaa gcacccaata gttctacctg gttcttccca tctgaccaaa      4680
     ctcatagtcg cagatgctca tttaaagacg ctccatggcg gtccgcagtt aatgacaaac      4740
     tatttacgag cagcttactg gataataggt gtcaagaatc tagtaaaggg ccatgtacgt      4800
     aggtgtgtcg tctgcgtaag aaacaaagcc agtaccaaaa cccaactaat gggctctttg      4860
     ccaagcatta ggtgtttacc agcacgagca tttttacata gtggcgtcga ctatgcagga      4920
     cccgtcaata ttaggacaag taaagggcgc ggacatcatt cttataaggg ctacatttgc      4980
     ctctttgttt gtatgtccac ccgcgcttta catttggaag tggttagtga tatgagcaca      5040
     cagtcatttt tagctgcatt ccgacggttt gtcagcagac gaggccattg ctccaaaata      5100
     tggagcgata acggcactac ctttgtaggt gctgctaaag aactaaaaca gctagcgtcc      5160
     aatgaagcga tgttagcaga tcacatggca tcaagtggaa ctgaatggca tttcattccc      5220
     ccgcacagcc cgaattttgg tggattatgg gaggcagggg tgaaatccac aaaataccac      5280
     ctcaaacgag taattggtga ctccactctt acttatgaag agttggccac attactcgcc      5340
     caaatagagg gatgtttaaa ttcacgtcca ataagtattg taaatactac tgaccccggt      5400
     gcaccattac ctttgactcc cgcgcatttt ttaattggtg aaccaatagt acatgcaccc      5460
     gatgctagtt ttgaaaattc aactgttagc agcttaactc gttggcaaca tattcaaaaa      5520
     atgcttcagt cattttggaa acgctggtcc caagagtatt taaccaatct gatgcatagg      5580
     tacaagtggt ctaacaaggt tccagaacca aatataggag acattgtctt aataaaggag      5640
     gatgatttgc caccaagtcg ttggttattg ggtagaatta tagaaaagca tcctggaaga      5700
     gataacctaa ctcgagtcgt tactttgaga acaaaatcat ccacaatcaa acgacccact      5760
     tccaggctgt gcattctacc agtagccgat tgatttaaat ctataataag taatgtactt      5820
     gagttcaaat tgttattttt atgttaagaa atattgttat tgataaggac attctgtcaa      5880
     taatgtcctt ggtgggcggt a                                                5901
//
ID   BEL-19_SpEx-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-381
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6927-6927 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 381 BP; 133 A; 69 C; 62 G; 117 T; 0 other;
     tgttgatgac aataaccaac cacaagagta acgaaaccat aatattcata tttattttat        60
     tttagttcaa attttataac tagatggcgt tgccgcaatt aaaaacgagc tatggtttcg       120
     ttacaactag tcatataagt atgtaaaatt tatttgtgta ttcagttcaa aacccagttc       180
     agaagccagt tcaaaccagt gcagtgaaaa tagttcagtt cagaccagtg cagtgcaaaa       240
     ccagttcaaa ccagtgcagt tgaaatctgt gtagttcaat agttcaaata tacgaaccag       300
     cagttcaagc actatatacg tggtttaatt tcaaccctat tagttgctac acaaggtcat       360
     cgattacttc ggtaattaac a                                                 381
//
ID   BEL-19_TrNi-I repbase;    DNA;    INV; 6461 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6461
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1026-1026 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1217..6460
FT                 /product="BEL-19_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MLAPHSVASPSVESNESLKTLFRRRGGIRSRITIFRN
FT                 YMDNFKLQKTPSNIDIRELTLRLNQLQELMSKFDTIQSEIEAIAPNLDEQM
FT                 SERDSTESEFYSLISVAQEFIGCHSSVPKEDNESINSNKSSCKLNSSVKLP
FT                 TINLPTFDGNYSKWLEFRDTFDSLINKNESIPIINKFHYLRNSLVGSASVA
FT                 VRSVEFSEGNYLIAWXSLCNRFNNTNILINNHLQSLVNINTIQKESFRALR
FT                 YLIDQIQKNLHALNILEIPTXGWDPLVIFLVSSKLDPRTNSKWEEYKGNLP
FT                 HLPSLEQFIRFLEKRAIILETANGGQNNSGKHSNYKENKSVKSLSTSIVGS
FT                 NSKVCVICKKLHFLYQCRKFRAMTLNERLCVVQEKNLCHTCLRSGHDSTSC
FT                 QLKLSCRICNAKHNTILHRHSTMSNVVKENIETTQPAISTNDLPVSLSAHL
FT                 PGQVLLCTAQVEIINNSNHSSIIARALLDSGSQCSFITKNLKERLGLNSNQ
FT                 VNKFNVTGINNNIACEITERCSLMLRSRVGSFKRSIDCLIIPKITGKLPCV
FT                 QVNAESLKFPKGVVLADPLFYKPADIDILIGADYFFNIMLNNKIDLGGDKP
FT                 TLQESQLGWLVAGPIAEPYYSSNIHCNLVNRDKRVSLQDIHNSVKKFWEVE
FT                 ELPTDCNKYSIDEQFCESHFVKNTRRLTDGRFSVMMPLTEDPEQALGNSFP
FT                 MAIKRFVNLEKKLSKHYKVKQQYSDFIEEYAKLGHLSEIQRPKFACYLPHH
FT                 CVIREHHDTTKLRVVFDASAKTSSSKSLNDIQAVGPILQSDLFSILIRFRI
FT                 HKFVLIADVEKMYRQIALDESQRHLQLVLWRDNPTTDNNISTDDVSQSIKI
FT                 LQLNTLTYGMASAPFLATRCLAELADKCQDKVIANVIKNDFYIDDLNTGAS
FT                 TVEELRHIYLNVTKVLKSACFPLRKFRTNCPQILSSTSDSDRCVEFHDKAN
FT                 VLGLNWSPKTDELHFPDGIEFSSKVTKRIIISTTCKLFDPLGLVSSCIIKA
FT                 KILLQHLWIAKLDWDDPVPELYAKRWFNFIQNLHYLSNIFIPRHVLVNNNL
FT                 NEQTVDLHCFVDASQQAYGACVYIRSQDREQNVTVRLLCAKTRVSPIKALT
FT                 IPRLELCAALIGAQLSEKVLNSVPCTVVSKYLWTDSTVVLGWLKTQNKTLQ
FT                 SFVRNRVNKINELTKDFEWKHVPTELNPADLASRGIDPQHLQFLTLWWEGP
FT                 SFLREDRSRWPAQPHTIPKDLPEVKVLHSADDTNNNISFIPFKKYSNYMRL
FT                 LRAYAYVLRFIKNVKNKQSKIKGPLQANELDNSLLVLLKESQVESFTKDIK
FT                 NIQKGIELPHKSKILCLKPILDTNGLLRVGGRLRHSDYQYDKKHPILLDGK
FT                 HHLAKLIMKYEHLHLLHAGPQLLLSSVRERFWPLGGRNLARSVVKQCVICT
FT                 RMNGQTVQPIMGDLPNVRTNADFPFNCSGMDFAGPFMISSKKGRGNRVTKA
FT                 YLCVFVCLITKALHLEVVSDLSTEAFILCLRRFVSRRGKPYALYCDNGKNF
FT                 VGANNELGRVIRSSIQAVTDYAANEAIKFSFIPAYSPHFGGIWEAGVKSAK
FT                 YHLKRVAGNTPLTFEELATLFTQIEAILNSRPLSPLSSDPNDTNPLTPGHF
FT                 LIGRPLMSVPSLPVNTARPNRYELIEKTRQQFWKRWSREFIAELQNRAKWK
FT                 RNSKEIQVGDLIIIKEDHSMPLHWRMGRVERLYLGADGICRVADVRTATGT
FT                 VKRAVTKLCPLPGVDQEEQELKISTPRR"
XX
SQ   Sequence 6461 BP; 1975 A; 1209 C; 1318 G; 1957 T; 2 other;
     tatggcgacc gtgactactg caatattttg aagaaatttc tattgggaga agaaaaaatc        60
     ccgtgaccct actgcgtcct cctggcgtcg gtggctgtcc ggaagaaaaa ggagcctggc       120
     tgtttgcacc tgcactgcaa acctctgcgg cccggcgtgc ctgagcacgt gttgtcttcg       180
     tgctccgctc gtcgtgtcgt cgcctcgtcg gtactgtctg cgcctgtgct gcaaaactca       240
     gcggcccggc gtgcctgagc acgtgttgtc gtgctccgtt cgccgtgtcg tcggtgctgt       300
     ctgcctgcgc ctgcgctgta aagcagcggc ccggcgtgcc tgagcacgtg tcgtcttcgt       360
     gttccgtcgc cgtgtcgtcg gtgctgtcta cacctgcggt gaaatactct gcggcccagc       420
     gtgcctgagc acgtgttgtc ttcgtgctcc gttcgctgtg tcgtcggtgc tgtctgtcta       480
     cgcctgcatg cgaaagtaag cccgttccat aatttccttt gtccctacct attttccatt       540
     ttctgtttgg tgtgagtgct tagcagcttt cgggcgtcgg ggaggtatcc agctagtagc       600
     tataaaatat tcctcgcatt tataatctct tacaaagcac tgcaagctaa cctaacacca       660
     cgtgccgcta aattgcacgc ttgaacaaag gtctactatt attttgtttc ttgcacaata       720
     gttctcttta tttgccaagt tatcgtaact tattaagtcc gtgaagtgca cgttttgact       780
     aagacctact ttactttctt gcacgaatag ctatccccat ttatcgagtt tttgtaactc       840
     attaattcca cgaagttcac gattattgca tcccattcaa cgaaatctgc cgactattcc       900
     agcttggtga ctgcgtgcct gagtccttcg tgctccgttc gctgtgttgt cggcgggctt       960
     gactgcgcgg cggtcagcgg cgccctgcgt acgccgcgca cgcgttaggc gagctcgcaa      1020
     cgacggtttg tttgctggac ttaagaggta gattgcaaat tatttgtaca agtgatagtg      1080
     ttttgtcaac gttagttcag ttaggaattt gaagcccaac tcattattga caaattattt      1140
     aagtgtagtg tgtaactagt aatttcctac atcacaattc taaaatacta aatatagaag      1200
     ccttgtattg ttaaacatgt tggccccaca ttcggttgcc tctcctagtg tagagagtaa      1260
     tgaaagtttg aagacgttat tccgtagacg tgggggaatt aggagtcgaa taacaatttt      1320
     taggaattat atggataatt ttaaacttca gaagactcct agtaatatag acattagaga      1380
     attaacatta agacttaatc aactacaaga acttatgtct aaatttgata caatacagtc      1440
     ggaaatagaa gcaatagctc cgaatttaga tgaacaaatg tcagaaagag atagtacaga      1500
     aagtgaattt tattctttga tttcagtggc acaggaattt atagggtgcc attctagtgt      1560
     accaaaagaa gacaatgagt ctataaattc taataaatca agctgtaaat tgaatagttc      1620
     agttaaattg cctaccatta acttgcctac ttttgatggt aattattcta agtggctaga      1680
     gtttagggat acatttgatt ccctgataaa taaaaatgaa tctatcccaa taataaataa      1740
     gttccattat ttaagaaatt cattagtagg tagcgctagt gttgctgtga gatcagtaga      1800
     gttttccgaa ggaaactatc tgatagcgtg gamatcctta tgcaatagat ttaacaatac      1860
     aaatatactt attaataatc acttacaatc gttagttaat atcaacacaa tacaaaagga      1920
     atctttcaga gcattaagat acttaattga tcaaattcaa aagaacttgc acgctttaaa      1980
     tattttagaa attcccacta maggatggga tccattagta atatttttgg tttcatcaaa      2040
     actagatcct agaacgaata gtaaatggga ggaatataaa ggtaatttgc cacacctgcc      2100
     ttctctagaa caatttataa gatttttaga aaaaagagct ataattttag aaactgcaaa      2160
     tggtggtcaa aataattcgg gtaaacattc taattataaa gaaaataaat ctgtcaagtc      2220
     tttatcaact agtatagtag gttctaattc taaggtatgt gttatttgta aaaaattaca      2280
     ttttttgtat cagtgccgta aatttagggc aatgacatta aatgaaaggc tttgtgtggt      2340
     acaggagaag aatctgtgtc acacatgtct ccgcagtggg catgatagca catcatgtca      2400
     attaaaactt tcttgtagga tttgtaatgc aaaacataat acaatattac atagacacag      2460
     tactatgtca aatgtagtta aagaaaatat agaaacaact cagcctgcta taagtaccaa      2520
     cgacctacct gttagtttgt cagcccactt gccaggccaa gttcttttgt gcactgcaca      2580
     ggtagaaatt attaataatt ctaatcatag ctctattatt gctcgggctt tactggattc      2640
     tggaagccag tgttcattta taacaaaaaa tcttaaggag aggctaggtt tgaactctaa      2700
     ccaagtaaat aaatttaatg ttacaggtat aaataacaat attgcctgtg aaattacaga      2760
     gcgttgcagt ttaatgttaa gatcacgagt aggctcattt aaaaggtcta tagattgcct      2820
     aattattcct aagattactg gtaaattacc ctgtgttcaa gtaaatgctg aaagtttaaa      2880
     gtttcctaaa ggagtggttc tagcagatcc tttattctat aaaccagctg acatagatat      2940
     tttgatagga gcagattact tctttaatat tatgttaaat aataaaatcg atttaggtgg      3000
     tgacaagcct actttacagg aaagtcagct agggtggcta gttgctgggc ctattgctga      3060
     accctactat agttctaata tacattgtaa tttagtaaat agagataaaa gggtgtcact      3120
     acaagatatt cataactcag ttaaaaaatt ctgggaggta gaagaattac ctacagattg      3180
     taataagtat tctattgatg agcaattttg tgagtctcat tttgttaaaa atacccgtcg      3240
     tttaacagat ggacgttttt cagtcatgat gccactaacg gaagacccgg agcaggcact      3300
     tggcaattca ttccctatgg caattaaacg ttttgttaat ttagaaaaga aattgagtaa      3360
     acactataag gttaagcaac agtatagtga ctttattgag gaatatgcta aattaggtca      3420
     tttaagcgaa attcaaagac ccaagtttgc ttgttattta cctcatcatt gtgtcattcg      3480
     ggaacatcac gataccacta agctgagagt agtctttgac gcctcagcca aaactagttc      3540
     aagtaaatca ttgaacgata tacaggctgt tggccccatt ttacagagtg acttattttc      3600
     aattcttatt cgttttcgaa ttcataaatt cgtattaata gcagatgtag aaaagatgta      3660
     cagacagata gcgttagatg aatcacagag acaccttcaa ctagtattgt ggagggataa      3720
     tcctacaact gataacaata ttagtacaga tgatgttagt cagtcaataa aaattttaca      3780
     gctcaatact ttaacttatg gcatggcctc tgctccattc ttagccacca ggtgtctagc      3840
     tgagctagct gataaatgtc aagataaggt tatagccaac gtcattaaaa atgatttcta      3900
     cattgatgat cttaatacag gtgcctcaac tgtagaggag ctaaggcata tttatttaaa      3960
     tgtcacgaag gttttaaaat cagcttgttt tccactgcgt aaatttcgaa caaattgtcc      4020
     tcaaattctt agtagtacat cagattcaga tagatgtgtt gaatttcatg ataaagctaa      4080
     tgtcttgggt ttaaattggt caccaaagac cgatgaacta catttcccag atgggattga      4140
     gtttagttca aaggtcacca aacgaattat catttccaca acatgtaaat tatttgatcc      4200
     attaggttta gttagtagtt gtataattaa ggcaaaaatt ttactgcagc atttgtggat      4260
     tgcaaaacta gactgggacg acccagtacc agagctttac gcaaaaagat ggtttaattt      4320
     catacaaaat ttacattatt tatctaacat ttttatacct cgtcatgttt tagttaataa      4380
     caatttaaat gagcagactg ttgatttaca ctgctttgtt gatgcgtctc aacaggcata      4440
     tggagcctgt gtttatatac gttctcagga tagggaacaa aatgttacag tgagattatt      4500
     atgtgcaaaa actagagttt cacctattaa agccctcact atcccacgtc ttgagttatg      4560
     tgcagctctg attggtgctc aattaagtga aaaggtttta aattcggtac cgtgcactgt      4620
     agtaagtaaa tatttatgga ctgattcaac agtggtactt ggatggctga aaactcaaaa      4680
     taaaactttg caatctttcg tacgtaacag ggtcaataaa attaatgaat taacaaaaga      4740
     ctttgaatgg aagcatgttc caactgaatt aaatccagcc gatttggctt ctagggggat      4800
     tgacccacag catctgcagt tcttaacttt atggtgggag ggtccttcat tcctaagaga      4860
     ggatcgttct cgatggcctg ctcaacctca caccatacca aaagatttac cagaggtcaa      4920
     ggtattacac tctgctgatg atactaataa caatatttca tttattccgt ttaaaaaata      4980
     ttctaactat atgagacttt taagagctta tgcgtatgtt ctacgcttca tcaaaaatgt      5040
     aaaaaataaa caatcaaaaa taaaagggcc attacaggca aacgaattag ataattcatt      5100
     attagtacta cttaaggaaa gtcaggttga gtcattcaca aaagacatta aaaatattca      5160
     aaagggtata gaacttcctc ataaaagtaa aatattgtgt ttaaagccca tattagatac      5220
     caacgggttg ctgagagttg ggggtagact aagacattca gattaccaat atgataagaa      5280
     acacccaata ttactagatg gtaagcacca cttagctaaa cttataatga aatacgaaca      5340
     tttacatttg ttacatgcag ggccacagtt gcttttgtcc tcggtccgcg agaggttctg      5400
     gcctcttggg ggcagaaact tagctcgcag tgtcgttaag caatgtgtta tctgtacccg      5460
     tatgaatggt cagacggtgc aacctattat gggcgacctg ccgaacgtaa ggacaaatgc      5520
     tgacttcccc ttcaattgta gcggaatgga cttcgcgggg ccatttatga tttcctctaa      5580
     aaagggacga ggcaaccgtg taaccaaggc ttacctatgt gtctttgtat gtttaataac      5640
     caaggcctta catttagaag tggtaagtga cctatccaca gaggctttta tattgtgtct      5700
     gcgtaggttt gtgtcacgtc gcggcaaacc ttacgcttta tattgtgata atggtaaaaa      5760
     ctttgttggt gccaataatg agttgggtag ggttataagg tccagcattc aagcggtcac      5820
     tgactatgca gcgaatgagg caataaaatt ctcttttatt cccgcgtact ctccacattt      5880
     tggtggaata tgggaggcgg gcgttaaatc ggccaagtat catttaaaac gcgtagctgg      5940
     caataccccc ctgacgtttg aagagttagc gacgctcttc acccaaatag aagctattct      6000
     gaactcccga ccactttctc cactctcttc agatcctaat gatactaatc ctttgactcc      6060
     cgggcatttc ttaattggac gtccgttgat gtcagtacct tcattaccag ttaacacagc      6120
     aagacctaac agatatgaac tgattgaaaa gacaaggcaa caattctgga agaggtggag      6180
     ccgtgaattt atcgccgagc ttcaaaatcg cgccaaatgg aaaaggaatt ccaaggaaat      6240
     tcaggtcgga gatctgatta taattaaaga ggatcactcg atgccgctac actggcgtat      6300
     gggacgagtg gaaaggctgt accttggagc ggacggcatc tgtagggtag cagatgtacg      6360
     gacagccacc ggtaccgtca aacgggcggt tacaaaattg tgccctctac cgggggtaga      6420
     tcaagaggag caggagttga agatttcaac gccccggagg a                          6461
//
ID   BEL-19_TrNi-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-19_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1054-1054 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 304 BP; 68 A; 93 C; 88 G; 55 T; 0 other;
     tgtgcgcgcc atcgcgcacc tagcaacagc ggggacgcgg ggtccgcggt aacgcgcgat        60
     cgcccgcgcc gcccgacaag cggggaggcg ggtacgcggg ggccgcggca acgcgcgatc       120
     gctcgcgccg cccggcaacg gcggcaacgg tcattcggcc acaggagaac tgagcgcacc       180
     ggacgcgcac tgcgcacgcg tcgctcacct agactctatc tatctacatt gtaatattga       240
     gccgtttcaa tttaatatat aatttcaagt aatcaaagtt gatcgtttaa tttaatcatc       300
     aaca                                                                    304
//
ID   BEL-1N_AA-I repbase;    DNA;    INV; 3484 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   BEL-1N_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3484
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 849-849 (2011).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..2439
FT                 /product="BEL-1N_AA-I_1p"
FT                 /translation="MAEVKRLFAQRSLVEAKVKRLQEQLVDRDGTNRPSFA
FT                 RVKLYVSELQFLYREYQRVYGELLSAFPAERYADLDENYERFEDLHFDACL
FT                 LVETLLLSFPTTGNRYQHSRALSYNYFAATTAPRWRTPIIRSRSPSPPTEQ
FT                 SVPIPDVMEKPNTSPPKELSPEQLFPAQANELKVSQFALNPIHSLQPPSAE
FT                 TSAMKLIPVCGAALVRSEGDLAEVIKSKSAPMPIVPPSVAPIAQKCHREED
FT                 STHRGKMPTTCEEVTTVAYEDESNPPCKQTVHQATNPIPVPIDPVRTHPKP
FT                 TSFQSATGFVPKNPVASSQSFHCATGSRPVLQRFPCASGFRTIPIKFPSAI
FT                 GLRPVAKRFPCRTGFRPAIPSRSAGFHPTPQRFPCAAGSIPALKHSSNLTE
FT                 SNSVVKPFQRAFPDVAGFPPVMKQPSSVIGYQPVSQRFPAASVFHSVAKKF
FT                 QCLASIHLIREQPSCATGPRSVLKQFPPSVGSHPAPEKPPDATGIPPPVPK
FT                 PPGVTGIPPVSELAMPSTEMPARFKPIRMSAGIPPISKPILKMSEICPAKH
FT                 PCPVSTGSHAVSKWLRCSTTIPPIAMPFLTTAGIHPVKESTPMPTGKRPVL
FT                 SEARNQRLTKKMMPPVNPTGDSKQPLTKSRPEKPPDEAPMRRRASEAIPEC
FT                 VSRAHPPKDVHQVVSKLSICGVCLFPILAQSGFPSPPLKNPIETLVLLSFH
FT                 CQLEVLFH"
XX
SQ   Sequence 3484 BP; 853 A; 967 C; 791 G; 867 T; 6 other;
     tatggtccan tcgagccgga tagaggagcc agttccttga aggctgcaac agcagcagag        60
     tcagtcgtca atcaacagat tgagacaaat ccattccaat tgctatcgcc gatagcaatc       120
     agctttccta ccaaaggatt gctgttgttc ctgcccggta gctcgacaca agagcgaaaa       180
     gaatattcct ggtttccatt ggcggagagg agacgaaatt ccccaagtga agtgaacaga       240
     gacagtgaaa aagtcccgaa gtccgaatca tttccacccc gaaagtaagt cgcgcgcgtg       300
     tgaagtggtt ccagaatggc cgaagtgaaa aggctgttcg cccaacgtag cctcgtcgag       360
     gcaaaagtga agcggctcca ggaacagttg gttgacaggg atggtaccaa ccgaccaagc       420
     tttgcacgag tgaagcttta tgtaagtgag ctccagtttc tgtaccgaga ataccagaga       480
     gtgtatggcg agttgctgtc tgcattccca gccgagcggt atgcagatct tgacgagaat       540
     tatgagcgct tcgaggacct ccattttgat gcctgcttac tggtggaaac gttgttgcta       600
     tcctttccga ccaccggtaa caggtaccag cacagtcgag cgttatcata caactatttc       660
     gctgcgacca ctgcgccacg ctggcgcacc ccgatcatac gaagccgatc accgagtcca       720
     ccgacggaac agtccgttcc gattccagac gtgatggaga agccaaacac gtcgccaccg       780
     aaagagttgt ccccagagca gctgttccca gcccaagcga acgagttgaa ggtgagccag       840
     tttgccctca acccaatcca ctccttgcag ccaccaagcg ctgaaacttc agccatgaag       900
     ttaattcctg tgtgtggagc agccctggtc cgttccgaag gtgatctcgc cgaggtcatc       960
     aagagcaagt cggcaccaat gccgattgtc ccgccttctg ttgctccaat agctcagaag      1020
     tgccatcgtg aagaagattc cacccaccgt ggaaaaatgc caacgacgtg tgaagaggtg      1080
     acaaccgttg cctacgaaga cgagtcgaac cctccgtgca agcagacagt tcatcaagcg      1140
     acgaacccga ttccagttcc aatcgacccg gttcgaaccc atccgaagcc gacgtcgttc      1200
     caaagtgcta ccggatttgt gcccaagaat ccggtagcaa gttcccaatc gttccattgc      1260
     gcaaccggtt cccgtccggt gctccagcgg ttcccttgcg cgagcggatt ccgcacgatt      1320
     cccatcaagt tcccgagtgc gatcggattg cgtccggttg caaagcgatt cccatgtaga      1380
     accggattcc gtccagcgat tccatcccgg tcggccggat tccatccaac gccgcagcga      1440
     ttcccgtgtg cggccggatc cattccggca ttgaagcatt cctccaactt gaccgaatcc      1500
     aattcggtag tgaagccttt ccagcgtgcg ttcccggatg tggccggatt ccctccggtn      1560
     atgaagcagc cgtccagtgt aatcggatac cagccggtgt cccagagatt tccagctgcg      1620
     agcgtgttcc attcggtggc caagaagttc caatgtttgg ccagcatcca tctgattcgt      1680
     gagcagccat cttgtgcgac cggacctcgt tcggttctga aacaattccc gcctagtgtc      1740
     ggatcccatc cggcgccaga gaagcctcca gatgcgaccg gtatccctcc tccggttccc      1800
     aagcctccag gtgtgaccgg tatccctccg gtatccgagc tagccatgcc gtctacagaa      1860
     atgcctgcga gattcaagcc gattcggatg tcagccggca tccctccgat cagcaagcca      1920
     atcctgaaga tgagcgagat atgtccagcg aagcacccgt gtccagtgtc aaccggaagc      1980
     catgcggtat ccaagtggtt gcggtgttca accacgattc caccgatagc gatgccattc      2040
     ctaacaacag ccggaatcca tccggtaaag gagtcaaccc cgatgcccac cggaaaacgt      2100
     ccggtattaa gcgaagcccg aaaccagaga ttgaccaaga agatgatgcc gccggtcaac      2160
     ccgactggtg attccaagca accccttacc aagtccaggc cggagaaacc accagatgaa      2220
     gcccccatgc gacgtcgagc cagcgaagcc atcccggagt gcgtgtcccg agcgcatcca      2280
     cccaaagatg ttcatcaagt ggtaagcaag ctttcgattt gtggtgtgtg cctattccct      2340
     atcctggctc aaagtggttt ccccagtcca cctttgaaga atcccataga aacattagtg      2400
     ttgttgagtt tccattgcca acttgaagtt ttgttccatt gagtaagatg tgtatccatg      2460
     taagatttcc acccacaata cagtccactt gacgagtcct acaagaaatg ataattccat      2520
     caaacgatct ttcaagtttt gtgccttacc gagtttgttt cccttatgtt gattccttat      2580
     cctaatatga gtatctagta ttgcaacaag taacatacga atccctgtga agtgtttgcc      2640
     cattaattcc aaattccaag atatgattat tgtgatccgt gagtccaagt gaattttcct      2700
     cccattgagt tttttatcgt tgaatccttc cctaccaagt tgtatgatgt atgataccgt      2760
     gcccactaag agagtgtagc cgattccctc aagttactag tgttccattt cgtgacagtt      2820
     agatagcgtc gtaaccaacc ttttatccaa ccatgaattt tacatctgaa agttgtgtcc      2880
     tccttatttt gcctcgattc cttatccagt gtttgtttag ccctttcacc gagtcaagat      2940
     agttcgccaa tccttattga agcttatgta cccacaatgc ctaatagtat ccagttatcc      3000
     aaatacagtc cacaagtatt gatacatccg tgtaaatccc aacatttgag ttagtatggc      3060
     agtctaccat aaactgccca ccaatgtttt cttcaacacc tgtgcccttt gtgtaattaa      3120
     aggttccttg cagtgcctta agtacaattc ccttttatct cgattatttc cctttgtgac      3180
     atacagccac caaagttgac ctattccaga agtgtggaaa gagtttcttc tgcctcaagt      3240
     gtgtcgccag ttgatgattc cgttttgtga tctcctgtga aacaagcagt tccttccgca      3300
     cgtaagtccg tagttccttc catccctttg agattatatg ttaaatcgta gaaagctatt      3360
     gtttccaccc tgacagtcct tnngagtnga gtccctgagt tccccatcac cgtgaatttt      3420
     tgccgtcatg cccggtcctt accatcgaat ccaacttccc tttncctatt ttggccgggg      3480
     agta                                                                   3484
//
ID   BEL-1N_AA-LTR repbase;    DNA;    INV; 670 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   BEL-1N_AA-I; BEL-1N_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-670
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 850-850 (2011).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus.
XX
SQ   Sequence 670 BP; 170 A; 217 C; 133 G; 150 T; 0 other;
     tgttcgcgcc aacgcgaagt ttctgatgag tttgtctgtg agtccttccc acccctgtcc        60
     catgtaacct cgagccgccg cgagtatttc ggcctctcat cccgacaact aacaaccacc       120
     ccaaataacc cacacacaca caccacgtcg ttagttttgc ttgcttccct ttcccatcct       180
     tccgagcgac atgatcgagc atgtacgcaa tccagctatg tacagcgtga agcagcaccc       240
     aaagagcttc cactaccacc accacaacga caccagcgag cagaccgatt gcagcatcca       300
     gtagtaatac atagcaggca gtggaagttt ccaccgccgc ccccacaccg ctgcgcatgc       360
     aacgtttttg gctacctgcc acctatataa ggagcttgca tgcgcaagga gtttattcag       420
     ttttctttca accaccattc tgtaaacatc aagaggaata atatagaagt ttaagttaaa       480
     gttaccaaac cgcctttccc tccaccagtg gaagccaatc agcctttttg aaggctagag       540
     ttgcaagagc cccctccagt cgagctatcg gtcctgtgcc ctgttgctcc cggcaacagg       600
     tggacggaag atcaacagat ctttccgttc ccgctcaccc gagccaaagt cccagttgca       660
     cgccgcaaca                                                              670
//
ID   BEL-1_AA-I  repbase;    DNA;    INV; 5465 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AA_;
KW   BEL-1_AA-LTR; BEL-1_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5465
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 851-851 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4485-5066] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..5465
FT                 /product="BEL-1_AA-I_1p"
FT                 /translation="MGLDHTPKKTTVDPEQLQMLIHQRGQIKGKVTKINNC
FT                 LEKAEDDPSQISASLLKVYGKKLEIHYSEYTEAHREVIAMIPPAKMEEQDE
FT                 KLDEFDALHTEALNRMERLSEYFAKPVPATAVASGAGQVIVQHHPLKAPIP
FT                 SFDGRVENWPKFKAMFEDLVVKSGDSDAIKLHHLDKALVGDAAGLINAKMI
FT                 RDNNFAQVWKQLSEQFENKRVIVDTHIDGLLQLKTVAKGNFKDLLELTKSC
FT                 ERHVAGLEYQGLVVDDLSGIIITKLVTSRLDDHTLQLWERKQEHGELPSYE
FT                 DTLQFLKGECQILERYHNSRHPVAAKEPPSKQSKPVNQKVHTVTSPNSECQ
FT                 CKVCGENHRHFECPIFTKMPIQERIIKVKQLRICFNCLRPGHCAKDCSSKR
FT                 SCATCHKRHHSLLHEDVPSNSTETKVLPDKNSPNLAAEAGAVPKIVPQPNP
FT                 NSSCSCNHTQTTKTVMLLTAVVNLESANGQFVPCRAMLDSGSQVCFVSESI
FT                 ANRLMISREPVNVPVTGIGGAKIYVREKLTVTMQSRCSDFSTDIDCLVVPK
FT                 VTGIIPSVKINTSSWPIPAGVQLADPTFHTPDKIDMLIGASKFFTLLKSGH
FT                 IHLADGLPELYETQLGWVFSGEFDNVAANTVVSHPVSVNSLAETMSRFWEI
FT                 EDVSQSTKDEGESDACEENFRCTHRRTSNGRYMVSLPFREDVASLQDNRSV
FT                 ALRRFLMLERRFKRDPTLKLLYSDFIAEYEALGHCREVNESNDDPTKRRYY
FT                 LPHHAVLRPTSSTTKLRVVFDASAKCNPSDKSLNEVLQVGGVVQSDLLSIL
FT                 LRFRVHPVVFTADIAKMYRQILVSEEHTRFQRIFWRSESNQRLRVLELLTV
FT                 TYGTAAAPFLATRCLVQLCHDEGNKYPIASNIIIEDCYVDDVLSGADTVEE
FT                 AIEAQRQLEDLLHLGGFPIHKWSSNCQELLENIPEENREKLVRLDQTSTDE
FT                 VIKTLGLTWSPNSDEFLFITKSPMKASETYTKRKVFSEIGRLFDPLGLVSP
FT                 VIVVAKILMQKLWMSGLSWDETLEGDLLLSWMKFCDALHQMSQIKIPRRVF
FT                 LCNAVAIEIHGFSDASISAYGAVLYVRTVFSDGRAEMRLLCSKSRVAPISE
FT                 LSIPRKELLAAQLLSRLVGKVAGSMKVKFDDVTLWSDSQIVLAWLRKPLTS
FT                 LQVFVRNRVAEVVSSTKDYNWKYVPTKENPADIVSRGCLPRALASNELWWN
FT                 GPLFLQSANYNSEPPGPLSDEELPELKLTSFVSAIVYNADNLPVFAKFSSF
FT                 RKLQRVIAYVKRFISNCKIKDPKLRILHCYLTIPELRQSMDVIVKVVQHEV
FT                 LGDEISRIENNEPCKRITSLNPVYDNGILRVGGRLKNSSILTMAKHPYILP
FT                 RHPIVDLLIRAYHLENMHVGPSSLLVILRGRFWLTEGRSAVRKITRSCVTC
FT                 FRARPTMTNQLMGNLPACRVTPAHPFEITGVDYAGPVFVKQGRRKPVVEKA
FT                 YISVFVCMVTRAVHLELVSDMTTEAFIAALQRFVSRRGLPREMHSDNGSNF
FT                 RGAKAELNELYKLFRSQSAVDKIEGFCLSKEIAWYFIPPEAPNFGGLWEAA
FT                 VKSAKYHLKRTLKDTNLTFEEYVTVLTQVEAILNSRPLYATTPDPDDPEVI
FT                 TPGHFLIGRPITAIAEPSYHDIAINRLGRWQFLQKLRENFWKKWRNDYLQT
FT                 MQQRTKDHVKKHNLLPGMIVLLEEQNLPPLSWKLGKIVRTYPGSDELVRTV
FT                 DVLVDGTVYKRPASRIAVLPIEDNKQLLNLCSENASQPGGE"
XX
SQ   Sequence 5465 BP; 1497 A; 1220 C; 1348 G; 1400 T; 0 other;
     ttggtccatc cgaaccggat ttgagccacg tcgtgcgtga gatgctgaat caaggaggat        60
     gttggaagaa actagtgtgt gagaacgaaa aaagtgaact cgactaaaag tgaattggac       120
     tagtagtgaa gaaagagacc tagtgcaagt gaaaaagtgt tgtgaaaagt gatttcggca       180
     aaatgggact cgatcatacg ccgaagaaga ccactgtgga tcccgagcag ctgcaaatgc       240
     tcatccacca gcgaggtcaa ataaaaggaa aagtgacgaa gataaacaat tgtcttgaaa       300
     aagccgaaga cgatccgtcg caaatcagtg catcattgtt gaaagtgtac ggtaagaagt       360
     tggagattca ttattccgag tacactgaag cccaccgtga agtgattgcc atgattccac       420
     cggcgaaaat ggaagagcag gatgaaaaac tcgacgaatt cgatgctttg catacggagg       480
     cgctcaaccg tatggagcgt ctttcggagt attttgcgaa gcctgtgcct gcaacagctg       540
     tagctagtgg agcaggtcaa gtgattgtgc agcatcatcc tctcaaggca ccgattccat       600
     cgttcgacgg ccgtgtggaa aattggccca aattcaaagc catgttcgag gacctagttg       660
     tgaagagtgg tgattcggat gcaataaagt tgcatcactt ggataaggcc ttagtaggag       720
     acgcagccgg cctcatcaac gcgaaaatga tccgagataa caactttgcc caagtgtgga       780
     agcagttgag tgagcagttt gaaaacaagc gagtcatcgt ggacacccat atcgatggtt       840
     tgctgcagtt gaaaacggtg gcaaagggca acttcaagga tctgctggag ctgacgaagt       900
     cgtgtgaacg tcatgtcgcc ggcctggaat accagggtct ggtggtggac gacctgtccg       960
     gaatcatcat tacgaagctg gtgacctccc gcttggacga tcatactcta caactgtggg      1020
     agcgaaagca agagcatggt gagttgccca gttacgagga taccttgcag tttttgaaag      1080
     gtgagtgcca aattctagag cgttatcata attctcgcca tcctgttgcg gcgaaagagc      1140
     ctccatcgaa acaatccaaa cctgtgaatc aaaaagtgca tactgttacg tcccccaatt      1200
     cagaatgtca atgtaaggtt tgtggtgaaa accaccgtca ttttgagtgt cccattttca      1260
     ctaaaatgcc tatccaagag cgaattatta aagtgaagca acttagaatt tgcttcaatt      1320
     gccttcgacc aggccattgc gccaaagatt gttcttccaa gcgtagttgt gcgacatgtc      1380
     acaagcgaca ccattccctc ctccatgaag atgtaccatc gaactccact gagaccaagg      1440
     tcctgcccga taagaattcc cctaaccttg cagcagaagc tggggcagtt cccaaaattg      1500
     ttccgcaacc caaccccaat tcttcgtgct cttgcaacca tacgcagacc acgaagactg      1560
     tgatgctatt gactgctgtg gtgaatctag agagtgctaa tggtcagttc gttccttgtc      1620
     gagcaatgct agatagtggt tcccaagtct gttttgtgtc tgagtcgatt gccaaccgtt      1680
     tgatgatatc ccgagagccg gtgaatgttc ctgttaccgg aattggtgga gcgaagatct      1740
     acgtaagaga gaagctgacg gtgacaatgc agtccaggtg ttctgatttc tccacggata      1800
     ttgattgcct tgtggtgcct aaagtgactg gtatcattcc ttccgtcaaa atcaatacct      1860
     cgtcttggcc aattcccgca ggcgtccagc tcgctgaccc caccttccat actcctgaca      1920
     aaatcgacat gctgatcggt gcctcgaagt ttttcacctt gttgaagtct ggtcatattc      1980
     atctagccga tggccttccc gagctctacg aaactcaact gggttgggtt ttctctggag      2040
     aattcgataa cgttgctgcc aacaccgtgg tatcccatcc agtatcagtt aattccctcg      2100
     ctgaaacaat gagtcggttt tgggaaattg aagacgtttc gcagtccacg aaagacgaag      2160
     gagagtcgga tgcatgcgag gagaactttc gttgtacaca tcgtcgtact tcaaacgggc      2220
     gatacatggt ttcactccct ttccgagagg atgttgcttc actccaggac aaccgatccg      2280
     tcgctttgcg ccgtttcctc atgctcgaaa ggcggttcaa aagggatcca accttgaaac      2340
     tattgtattc tgatttcatt gctgagtacg aggcgttggg ccattgccgg gaagtcaatg      2400
     agtccaatga tgatcctaca aaaaggcgtt attatttacc acaccatgcg gtactccggc      2460
     cgaccagctc gacgacaaaa ttgagagtgg tttttgacgc ttcagcgaag tgcaatccgt      2520
     cggataaatc actcaacgag gtactacaag tcggaggtgt tgtccaaagc gacctgttga      2580
     gcattctact tcgatttagg gtgcatcctg tggtgttcac cgctgatata gccaaaatgt      2640
     atcggcaaat actggtttcc gaagaacaca cccggtttca acgaatcttt tggcgatcgg      2700
     agtcaaatca acgactacga gttctggagc tgttaacagt gacatatgga acggcagcgg      2760
     cgccattcct ggctacgaga tgtctggttc agctttgtca cgatgaaggt aacaaatatc      2820
     ctattgcgtc caacattatc atcgaagatt gttacgtgga tgatgtactc tcgggtgcag      2880
     atactgttga ggaagctatt gaagcacagc gtcaattgga agatttgctt catctaggag      2940
     gttttcccat tcataagtgg agctcaaatt gtcaggaact gctggaaaat attcctgagg      3000
     aaaatcgaga aaagctagtg cgtttggatc agacatcaac cgacgaggta atcaagacac      3060
     ttggacttac ctggagccca aattcagatg aatttttatt cattacgaag tccccaatga      3120
     aagcgtctga aacatacacg aagcggaaag ttttctcgga gattggaaga ctttttgatc      3180
     cattgggttt ggtctctccc gtcattgttg tagccaaaat cctaatgcaa aaattgtgga      3240
     tgtccggcct ttcctgggat gaaactcttg aaggagattt acttctttct tggatgaagt      3300
     tttgcgatgc tctgcaccaa atgagccaaa taaaaattcc tcgacgtgtt tttctgtgca      3360
     acgccgttgc catagagatc catgggtttt cagacgcctc gatttctgcg tacggtgcag      3420
     ttttgtacgt gaggaccgtc ttttcagatg gtagagctga aatgcgtttg ctatgcagca      3480
     aatcgagagt tgctccaata agcgaattga gcattccaag aaaagagttg ctagctgctc      3540
     aacttttatc acgactggtt ggcaaggtag ctggatcaat gaaggtcaaa ttcgatgacg      3600
     taactctttg gtctgacagc caaatagtgc ttgcctggct ccgtaaacct ttaacgtcac      3660
     tccaggtgtt tgtaaggaac cgagttgcgg aggtcgtttc aagtaccaag gattacaatt      3720
     ggaaatatgt ccccacaaag gagaatccag cagatattgt gtcgagagga tgcctgccta      3780
     gagccttggc gtctaatgag ttgtggtgga acggccctct attcctgcaa tcagcaaatt      3840
     acaattccga accaccagga ccgctatccg atgaagagct gcctgagcta aaattgacat      3900
     cgtttgtttc tgcaatcgtg tacaatgcag ataaccttcc cgtattcgcc aagttcagct      3960
     catttcggaa actccagaga gtgattgctt atgtaaaacg gttcatctcg aactgtaaaa      4020
     ttaaggatcc gaagcttcgt attctgcatt gctacctcac cattcccgaa ttacggcaat      4080
     caatggacgt gatcgtcaag gttgtgcaac atgaggtttt gggagatgaa atcagccgta      4140
     ttgagaacaa cgagccgtgt aaaaggataa cttcattaaa ccctgtgtac gacaatggaa      4200
     tattgagggt aggtggaagg ttgaaaaatt cgtccatatt gaccatggct aaacatccgt      4260
     acatcttacc gaggcaccct attgtcgatc ttctgataag agcttatcat ctcgagaaca      4320
     tgcacgttgg gccgtcgagt ttgttggtga tacttcgagg tcgattttgg ttgacagaag      4380
     gaaggtctgc cgtacgaaaa atcacaagga gctgcgtaac ttgtttccgt gccagaccaa      4440
     ctatgacaaa tcagctgatg ggaaacctgc ccgcctgccg tgtaactcct gctcatccct      4500
     ttgaaataac aggagtcgac tatgcgggtc ctgtcttcgt gaaacaaggc cggcgaaaac      4560
     cagtagtgga gaaggcatat atatccgtat ttgtgtgtat ggtgacacga gccgtacact      4620
     tggagttagt ctcagacatg accacggaag cattcattgc tgcattgcaa cgttttgtca      4680
     gcagaagagg actgccacga gaaatgcact cagataatgg atcgaacttt cgcggggcaa      4740
     aggcggaact caatgagctg tacaaactat ttcggtctca atctgctgtt gacaaaatcg      4800
     agggtttttg cttgtcgaag gaaatcgctt ggtattttat tccccctgag gcgccaaatt      4860
     tcggaggcct ctgggaggca gcagttaaga gtgctaagta ccacttgaaa cgcactctga      4920
     aggacacaaa tttgacattc gaagaatatg taacagtttt gacacaggtt gaggctatat      4980
     taaactctag accgctctat gctaccacac ctgatcccga tgatcccgag gtgatcactc      5040
     ccggtcattt tttgatcggg cgtccaataa ctgcaatcgc ggagcctagc taccacgaca      5100
     tcgccataaa tcgacttgga cgttggcagt tcctgcaaaa actacgggag aacttctgga      5160
     aaaagtggag gaatgactac ctgcaaacta tgcaacaacg taccaaggac cacgttaaga      5220
     agcataatct gctgccaggg atgattgtgc ttctggaaga gcaaaatttg ccaccgttga      5280
     gttggaaatt ggggaaaatc gtgcgaacct atccaggatc cgatgaactg gttcgtacag      5340
     tcgacgtact ggttgatggc actgtgtaca agcgtccagc ttcacgaatc gcagtgcttc      5400
     caattgagga caataaacag ctgctgaatc tttgttccga gaatgcttct cagcccgggg      5460
     gagaa                                                                  5465
//
ID   BEL-1_AA-LTR repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AA_;
KW   BEL-1_AA-I; BEL-1_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-572
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 852-852 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 572 BP; 144 A; 155 C; 144 G; 129 T; 0 other;
     tgttcacgcc caaacgtgaa cgacgactga cagccgccag tcagcgagag cgaataccat        60
     gttgcgcaat cattcgacgt tagctccacc catctggcat gcaacgacac gacgggacga       120
     caatcggacg gaagaagaag atgaaacaac aacgaccggc agagtataaa accagcgcag       180
     gtagcgttgc acatatcagt cttttttata atttcaaagt ggtaacatcg aaaataaaat       240
     gtgtagataa gtgaagtggc tagttttctt tcggcgtctt ccttgaggag cagaccaccc       300
     gacgaggaga gttccctgcg gtgtttacag tccaccgacg atcgagttgt tggcttcgac       360
     ggacttgtgg aacccaatcc gcccttttga gggcaagaag agttgtttgt ttcttccccc       420
     cacaagctcc cgagaagaac actcgccctt tcccggcttc ctgcttgagc ggcaccctct       480
     cctttcctga cgtgtcagga cgtgtttcgt catgtcgcaa gagagcatgg aagtccatcg       540
     tgcgtttccc ggagcctagt acggccccga ca                                     572
//
ID   BEL-1_AEc-I repbase;    DNA;    INV; 5623 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AEc_;
KW   BEL-1_AEc-LTR; BEL-1_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-5623
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 653-653 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4647-5237] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..1812
FT                 /product="BEL-1_AEc-I_1p"
FT                 /translation="MKLSSASDAVPRETDAVTRLLQQQTELMEQMRRDAQH
FT                 EGADAMTPRSNNETLSAILARQTDILDRVANNAGTINADTRVKLPTIKLPR
FT                 FDGKIEDWKAFSDSFRSIIHVRPQLSDVEKFQYLVSSISGDAAKIIESIEL
FT                 TGQNYSTAWELLLSRYDDPRSLKKKHIECLFTMPVVAKESAKALRELIDYT
FT                 SRHLRMLKILGLPTDSWDDLIMHMMEDKFDVKTLRAWEEETKSSETVTLND
FT                 MLEFLKNRSLILERIESRSNDRALKEKELRSKGSHGHSKSQAGNKGAANLK
FT                 TSSLTSSLNTGKCFLCDGSHLLFVCEKFLALSVADRIKEVKRLKLCINCLR
FT                 NDHYVKACKRGSCRECNGRHNTLCHQQQADKDSAKSEPQDNNHQLVANVAV
FT                 NHAYHKVKRRRILMATARLEATRCNGSLIPIRVLLDSASEANFVTQAAYNK
FT                 LGLKKIGLSKL"
FT   CDS           1944..5597
FT                 /product="BEL-1_AEc-I_2p"
FT                 /translation="MNIDRDKLQIPSNLVLADSEFHNNGPIDMLLGAEYFF
FT                 DLLDVGKIELGQDQLVLQNTKLGWIVAGSVPITACRDSAIDRGATSALVCS
FT                 VEPRDVLKECLERFWKLENYDSDKTRALSIDEKRCEQHFEQTVTRTSNGRF
FT                 MVKLPFRDANLPIGDNREVALKRLMHLERTLKNNEVMRDRYVKFMREYIEL
FT                 DHMSVLKPPLDDCKGAVYLPHHGVLKESSTSTKLRVVFDASAKNNKGVSLN
FT                 DALLIGPVLQDGLIDIIIRFRTYKIALTADLQKMYRQVLVQEDDRDFQRIL
FT                 WRFSPEQPVQDYRLNTVTYGQACASYLAVRCLRQLGEEGKESYPLASHTLL
FT                 NDTYVDDIISGASTIENARSLQEQLTMLLREGGFEAHKWCSNSDDALKGVP
FT                 HELCESNSSFKIDANDTIRALGLEWKPNSDRLQFTTNTIGHASTKREMLSA
FT                 IGKLFDPLGLIGPILTVAKILMQSLWEIKTGWDDPLPDSVLDKWKEFRDSL
FT                 NNTHELYVPRLVVGVSKNCRYSMFGFCDASEKAYGACIYIRSVSESSEETT
FT                 VRLLCAKARVAPLKKQSIPRLELCSALLLCKLINNVKHAIHIEIDEIRAWS
FT                 DSMVVLYWLRGDVARWKTFVSNRVSEISEILPAIHWNHVRGSENPADLISR
FT                 GVSPAQLKDNSLWWNGPKWLSYIRPITSEGSLDLEFAEDAVHRAEIEAKQL
FT                 TAVCNLIVPQLLVSNETINTLITNCSTFTRIERILAYCIRFLHNCRKGHED
FT                 RELSKLTLPELELSRREVLKHSQRVYFAEELKCLQNKRELSRTSPLLQLHP
FT                 FLDEHGIIRVGGRLQAAPWSFERKHPILLPAQCKITRLLIEREHRALLHAN
FT                 PQLLLASIRQQYWPLNARNLVRQVCRSCVWCARHNPRGLTQAMGSLPSDRV
FT                 QPSRAFAVTGVDFAGPITTLVNKGRGRKTCKSYIALFICFATKAIHLEATS
FT                 ELSTTAFLATLRRFIGRRGSPRKICSDNATNFVGAKRELQELYAFLRTSIN
FT                 GEVGDALQERGIEWSFIPPYSPHLGGLWEAGVKSCKYHLRRVMGNTLFTFE
FT                 ELTTSLVQIEACLNSRPLSPLSSDPSDLEPLTPGHFLIGEPLTSLPDNNLT
FT                 DIKINRLDRWEMVQRSVQEFWKRWAAEYVSNLQSRVKWKTRQENLQVNDLV
FT                 LLKEDNLPPLKWRIGRVTEVHPGKDNLVRVATVRTTTGIVKRAIAKLCKLP
FT                 VNDSIKED"
XX
SQ   Sequence 5623 BP; 1677 A; 1210 C; 1324 G; 1412 T; 0 other;
     ttaaaataaa gttataagcg aaaattgtat tgtatcgagt caaccattca atcacataca        60
     taacatttgg tccttcgagc cggattccac gtctggccat tcaacgtcag cattcgaaaa       120
     gcatcacgca ccgcaattcc aaccaaacta ccgagtcacc aaggagacga tttcaaagat       180
     gtcggagatg ctgatcttcg ccgagcacga ggctacgtca aggcaaagat aacgagattg       240
     cgaacgcgag tgacgcaagc cgatggcatt gacgaggaac aagcggaggc aaggctggag       300
     aaactggaag acacatacaa ggattttgag tccatacaac ggcaattact agaaaaagag       360
     ggcgaattca acgacgagga cgcactagag caagaatgtt tcgaagaaag gtattttgag       420
     gtaaaatctt tgttaaagcg atgcatgaag ctatcgtcgg cgtcggacgc tgtaccgcga       480
     gaaacagacg cggtcactcg gttgttgcaa cagcaaaccg agctcatgga acaaatgcgt       540
     cgcgatgctc agcacgaagg cgcggacgcc atgacaccgc gtagtaataa cgagacgttg       600
     tcggccattc tcgcgcgaca aaccgacata cttgaccgcg tggcaaacaa tgcaggcacg       660
     attaacgcag atactagagt aaagttgcct accatcaaac taccgaggtt tgatggcaaa       720
     atcgaggatt ggaaagcttt ttctgacagc tttcgatcaa tcatacatgt cagaccgcaa       780
     ctgtctgatg tcgaaaagtt tcaatattta gtttcgtcaa tctcagggga cgccgctaaa       840
     attattgagt caatcgagct aacgggtcaa aattattcga cggcttggga attactgcta       900
     agtagatatg atgatcctag gtcgctcaag aaaaaacata ttgaatgttt gttcacaatg       960
     cccgtcgtag caaaagagtc agcgaaggct cttcgcgagt taatcgatta tacttccagg      1020
     cacctacgca tgttaaagat tctaggatta cctaccgatt cttgggatga tctgatcatg      1080
     cacatgatgg aagacaagtt cgatgtgaaa actcttcgag catgggaaga ggaaacaaaa      1140
     tctagcgaaa cagtgacgtt aaacgacatg ctggaatttc taaaaaatag aagcctcatt      1200
     ttagagcgta tcgagtcacg atcgaatgac agggctctca aagaaaagga gctgcgtagc      1260
     aagggctctc atgggcactc taaatcgcaa gctggaaaca agggtgctgc aaatctcaaa      1320
     acaagttctc taacctcttc tctgaatacg ggtaagtgtt tcctctgcga tggatcacat      1380
     cttttatttg tttgtgagaa atttctagct ctgtcggttg ccgatcgaat caaggaagtc      1440
     aagcgtctaa agctatgcat aaattgcctc agaaacgacc attacgtaaa ggcatgcaaa      1500
     aggggttcct gtcgagaatg taatgggagg cacaatacac tatgtcatca acaacaggct      1560
     gacaaggact ctgcaaaatc agagccgcag gacaacaatc atcaattagt tgctaatgta      1620
     gcggttaatc acgcatatca caaggtaaaa aggcgacgaa ttctcatggc cactgcaagg      1680
     ttagaagcaa cgcgatgtaa tggctcgcta attccgattc gcgtacttct tgatagtgcc      1740
     agtgaggcaa attttgtcac tcaagctgcg tacaacaaac tagggttgaa aaaaataggg      1800
     ctttcgaaat tgtgaccggt ctaaacgaga ttgaaaacaa gattcacagt atttgcgaag      1860
     ttcacgtaaa gtcgaggtgc tccaatttcc aggccagtgt tcaatgtctg atcgtgccca      1920
     aaattaccaa gaatttgccg tccatgaata tagatcgtga caagctacag ataccgagta      1980
     atcttgtatt agctgactca gaattccaca ataacggtcc aatagacatg ttactagggg      2040
     cggaatattt ctttgacttg ttagacgtgg gtaaaatcga gcttgggcag gatcaactag      2100
     ttttacaaaa tacgaaactt ggatggatcg tagcaggttc cgttccgata acggcctgca      2160
     gggattcggc catcgacagg ggagcgacaa gcgcattggt ttgttcggta gagcctcgcg      2220
     atgtgttaaa ggaatgtctg gaaagattct ggaaattgga aaattacgac agcgacaaaa      2280
     caagagcgtt atcgatagac gagaaaagat gcgagcagca tttcgagcaa actgtcacgc      2340
     gaacaagcaa tggtagattc atggtaaaat tacctttccg cgatgcgaat ttacctattg      2400
     gtgataaccg agaagtagct ttgaagcgtt taatgcattt ggaacgcaca ctcaagaaca      2460
     atgaagtcat gcgagatcgt tatgttaagt tcatgcgaga atatatcgag ttagatcaca      2520
     tgtcagtcct gaaacctccg cttgacgatt gcaaaggcgc ggtctatttg cctcatcatg      2580
     gggtgttaaa agaatctagt actagtacaa aattacgtgt tgtatttgat gcatccgcta      2640
     aaaataataa gggcgtgtct ttaaatgatg ctcttttgat cggacccgtt ttacaagatg      2700
     gcttaatcga cataattatt cgttttcgta cttacaaaat cgctttaact gccgacttac      2760
     agaaaatgta tcgccaggtg ttggttcagg aagacgatcg cgattttcaa cgaattttat      2820
     ggagattttc gcctgagcaa cctgtacaag attatcgctt aaatactgtt acgtacggcc      2880
     aagcctgtgc gtcttacttg gcggtacgtt gcttgagaca attaggtgag gaaggtaaag      2940
     agagttatcc gcttgcgtcc catactctat tgaatgatac ttatgtcgac gatataattt      3000
     cgggggctag cacgattgaa aatgctcgtt ctttgcaaga acagttaact atgttattac      3060
     gagaaggagg attcgaagcg cacaaatggt gctctaattc tgacgacgca ctgaaaggag      3120
     ttccgcacga gctctgtgaa tctaattcta gtttcaagat tgatgcgaat gatactattc      3180
     gagctttggg gctcgaatgg aagccaaatt cggacagact tcagtttacc acaaatacaa      3240
     taggtcatgc gtccacaaag cgcgagatgc tgtccgcaat tggtaaacta ttcgatcctt      3300
     tgggtttgat aggtcccatt ttaacggtag ctaaaatcct gatgcaaagt ctttgggaaa      3360
     tcaagacagg ctgggacgat ccactcccgg attcggtgct agacaagtgg aaggaattcc      3420
     gagattcctt aaataatact cacgagttat atgttcctcg attagttgta ggtgtatcaa      3480
     agaattgtcg atattccatg tttggatttt gcgacgcttc cgagaaagca tatggcgcat      3540
     gtatctacat acgatcggta agcgaatcca gcgaagaaac gacggttagg ttattatgcg      3600
     cgaaagcgag ggtagcccct ttaaagaagc aatctatacc taggttagaa ctatgtagcg      3660
     cgttattact atgtaaattg atcaataatg taaaacacgc cattcacatt gaaatcgatg      3720
     aaatacgggc atggtctgat tccatggtcg tgctgtactg gcttcgcggc gacgtagcgc      3780
     gttggaaaac tttcgtatcc aaccgtgtgt cggaaattag cgaaatactg cctgctattc      3840
     attggaacca tgtaagaggt tcggagaatc ccgcagatct gatctcaaga ggagtttcac      3900
     ctgctcagct gaaggataat tccttatggt ggaatggccc taaatggttg tcatatattc      3960
     gtcccatcac aagcgaagga agtctcgatt tggaattcgc cgaggatgcc gtacacagag      4020
     ccgagattga agctaagcaa ctcactgcag tttgcaatct catcgtacct caattattgg      4080
     tttccaacga gacaatcaac acactcatca cgaactgctc aacgttcaca aggattgagc      4140
     ggatacttgc ctattgcatt agatttcttc ataattgccg caaaggacat gaagaccgag      4200
     aactatctaa attgactcta cctgagttgg agttatcaag acgcgaggta ctcaagcatt      4260
     cacaacgtgt ctacttcgcg gaagaactaa aatgccttca aaacaaacga gaattaagca      4320
     gaactagtcc attacttcag ctacacccat ttctagacga acatggtata atcagggtgg      4380
     gcggacgact tcaggcggcg ccttggagtt tcgaaaggaa acatcccatc ttactgcccg      4440
     cacaatgcaa gatcacacgt ttgctgatcg aaagagagca tcgcgctcta ctgcatgcta      4500
     atccacaatt gttgctggca tcaatacgcc agcaatactg gccgctaaac gcaagaaatt      4560
     tggtgcgtca ggtttgccgt tcctgtgtct ggtgtgctag gcataaccca agaggactaa      4620
     cacaagcgat gggatccctt cccagcgata gagtgcagcc atccagagca ttcgccgtca      4680
     ccggggtcga ttttgctgga ccaatcacta cccttgtcaa caaaggacga ggtcggaaaa      4740
     catgcaaatc ctacatagca ttatttatat gcttcgccac caaagccatt catctcgagg      4800
     ctacaagtga gttatctacg acggccttcc tagccacgtt acgccgcttc attggtcggc      4860
     gaggttcgcc tcgaaagatt tgcagcgata acgccaccaa tttcgtgggt gctaaacgcg      4920
     agttacaaga gttgtacgct tttctccgca catccatcaa cggggaagtt ggcgacgcgt      4980
     tgcaggagag aggcatagaa tggagcttta ttcctccata ttcgccgcat ctaggaggtc      5040
     tatgggaagc aggagtcaaa tcctgtaaat atcatctccg cagagtcatg ggcaatactt      5100
     tgtttacctt tgaggaattg acaacgtctc tcgtgcagat tgaagcgtgc ctgaattcga      5160
     ggccgttgtc acccctatcc tctgatcctt ctgatctgga acctttaacg ccaggacatt      5220
     tcctcatagg agaaccacta accagtcttc cggacaacaa tctaactgat ataaaaatca      5280
     accgccttga taggtgggag atggttcaac gctcggtcca agaattttgg aaacggtggg      5340
     cggccgaata cgtgtccaat ttgcaaagcc gcgtcaagtg gaaaactcgc caggaaaatc      5400
     tccaagtcaa cgacctcgtg ctcttaaagg aggataatct tccaccgtta aaatggagaa      5460
     ttggacgcgt taccgaagtt catcctggca aagacaattt agtacgcgtc gcgacggtgc      5520
     gcacgaccac tggtatcgtt aaacgtgcaa ttgctaaact ttgcaagtta ccagtgaatg      5580
     attctataaa ggaagattaa ttgattaatc ttggtgggcg gtg                        5623
//
ID   BEL-1_AEc-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AEc_;
KW   BEL-1_AEc-I; BEL-1_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 654-654 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 221 BP; 44 A; 54 C; 70 G; 53 T; 0 other;
     tgttagcgcg ttgactatct atttatgtta tccattcatt cgatgtaagc gctccatgcc        60
     cgcgcgcgtt agttgataag tcccgtcatg gtaaggcccg ttaccgagag agggagtcgc       120
     ctcgcgagtg tacacgggca ttggcgcgac ggtagcgagt gtggtgacgc tgggtcactt       180
     ccatgcgaga cgagaaggcg tgcagaagtc cgcgattgcc a                           221
//
ID   BEL-1_AnFu-I repbase;    DNA;    INV; 7830 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-7830
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 659-659 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1091..6352
FT                 /product="BEL-1_AnFu-I_1p"
FT                 /note="PHD, DUF1759, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MDYKYKKNPNGHCKLCVKEDEQGKMAECKECDRWFHS
FT                 ACLNLKTVPSKFTCPKCEQMKLEKEQARQTIMQTERLLSEKIAAEEKEKKE
FT                 KAKYEKEIERLEEIIRAEEILNQSGTSQHDVHELTKNVDKLVDAWSLGPSC
FT                 RKNALLELPEFYGSSKTWPRFKLLFKETSKTGKLTNLHNLSRLQKHLKGDA
FT                 LRAVSGLLVNPENVDAILDRLDKLYGSPASVYSALLKDLMAIKGASLDNPV
FT                 TIIDFSNALSNMVENMAMLGHEEYLMDQRLLQDLVAKLSPELRNEWLKEAL
FT                 KSESKEAKTLTQFSKWLKPTEELAIALLASEGNQRSKPVKLNYHQARPRGE
FT                 NKRACAVCGSHHKTVECRKLLSMPSQERWKVFKDKNICSNCCASNHSAYDC
FT                 RSAPQCTIAGCGKRHNTVLHRHDSFGQTRLNCHQNAAEYLFQIIPVTAYNG
FT                 DKSVNTYAFIDPGSSSSLMTEELRSELGVQGPRKPLTLAWTNGTFQVEDQS
FT                 TSVGIQIRGPNKRLLDIKNVRTVKELDLPRQSIDAKEMKKRFAYLKGISMS
FT                 SYSNARPTILLGLPHAYYTQALGHRAGEPDEPVAHKTRLGWVLFGKDTAVS
FT                 ETDNYHIFTMVEKVKEEEKTLNDLMKGFFSTEEFGVRGNNEIITSKADARA
FT                 LDTMKKTCKRIDQGYEIGLLWKYDKPTLPNSYAQALSRLKSQERKMENDPK
FT                 LKEWYFNEISSYVDKGYARKADPKELLQTTGNINYIPHFSVVNLNKQNPKP
FT                 RLVFDAAAKNEGISLNSQLYSGPDNTTPIFGVLSRFREHKIACSGDIKEMF
FT                 HQVKIRKEDQCAQRFLFRKSPLEVPQVYVMQVMTFGATCSPACAQYVKNSN
FT                 ALQYSASNPRAVKAITENHYVDDYLDSFPDVESAAQTIEEVCEIHNKANFF
FT                 IRNFISNSKELVAKIPKDRASEQKTYDLHDKTQDFEKVLGMYWDTRNDVFR
FT                 YKLKNLYEQPLSKREMLAYIMRIYDPLGLLANIIIQGKILMQDLWKAGINW
FT                 DDSIPEHLLVGWNGWLERIKKVEEIVIPRCLSQASSIKIREMHVFVDASEK
FT                 AFSAVAYMRTIHDQGVDVNIIAAKTRVAPTKPLSIPRLELQAAVLGVRLAE
FT                 MIKKEVRVKIDNEYFWTDSKTVLAWINSEARNYKQFVALRIGEILNDTRAS
FT                 QWQWVASKSNPADEATKVILENSKWLKGPEFLQDVVINMTQPKLFVTFEEV
FT                 RPVHTIKTITKIDWNVIAVEWCSNWHRLKRSLAIGLKYIDWLKAKNNGTEF
FT                 SSTITKADLDKAERYLLRKVQWESFSEEMTHLSLKIPTANNSNIRGLCPML
FT                 DEENLLRSRGRLEHAKYMTFEAKCPIILPKGHHVTNLIIAHYHERYFHQKA
FT                 ESVMAAIRQKFWIPDIRTALKGIINKCQYCKNQRAKPIPPIMAPLPECRMA
FT                 AFQMPFSHTGVDYFGPLNITIGRRVEKRWGALFTCLTTRAVYLEVAHDLSA
FT                 NTFIMCLRNVQHRRGKIEHLYSDNGTNFIGANNQIKSLVERCASEGITWHF
FT                 NPPGAPHFGGSWERLVKEVKSLLPTDKNFQEATLRAVLTEIEFIMNNRPLT
FT                 HIPLEQEDDEPLTPFHFLIGHSGEAVPSTAGKELSHTTRTNWKAAQAIAEQ
FT                 YWKRWIKEYLPTISKREKWLKLSKPVQVDDIVTFPDENRIGKWIKGRVTET
FT                 FAGQDGIVRSVRLKVGQNEYRKAVVNLAVLDVKPSDQNQDNSPPTWGRKRS
FT                 LDLKLIKEKASALNQSISKKRPRVTINPVTWQLS"
FT   CDS           6340..7797
FT                 /product="BEL-1_AnFu-I_2p"
FT                 /translation="MAIVIKFVLVVCCAVSALKIEPVLEAGLFFDHAGTLL
FT                 LERGKWDTLYFTRIRPENDTKLISTIELELKNAVLATNETDIRVLNLKTSL
FT                 DNECRYARKLIQDNIKFREKRSRGIFGILKDFLFGGSDIDEQLALFRTSED
FT                 QRLAVITNKLERDNDNHSKVESHLSTRIHRLQDGITALNKAVNENKKLQMS
FT                 KYIEETLILANVVIQGIITKYKALTDNPLTNEDQNAMIKEIKTQLPNNEVL
FT                 KNPFVKNKALINGEIILHVEYTILSNEHFEILNVIPIPCMQNYSILNIKNE
FT                 RIAISDKGNYLYPESFTIINDTHALSHDTTIRRNLDCIVAAILHKESNITC
FT                 MVSKLNVPFTKFVTLHSPNKILYYTTQPNKIYLNCNRTITNPAHNIGVITL
FT                 SETCSVETDEITIQPVIARQNILHKTYFKSLKQMSSVSPINEKKSEDPIIA
FT                 ITIGIAIGMISVAMIIAFAIVKWHPRNQKKPFPLPSNDIEL"
XX
SQ   Sequence 7830 BP; 2664 A; 1697 C; 1808 G; 1659 T; 2 other;
     tggtggctcc agagaggaaa cttcctcacg cctgaaactc tcccgcggtg gtaccttaag        60
     aaagacaaac tccctcggga cgcgtcgacg accaagtttc gcgcgcgtca aaccgtggta       120
     acggccgtca taggcaacat aacgccgacg agccacgaaa ggtctagctc ttgtgcgatt       180
     agtgcaacac cggttacaag tgaacagtga agttcgtcaa gtgatattga cgcttaaaag       240
     tcacataggt tcgtgacacg caagaaactg ttcactgaga ggtgccagga gcaagaagtg       300
     ccgaataaag taagttgggg gatcaaccca acgacatcat agtgagaagt gtcagcgacg       360
     agcggacagc tcacaacgcc atctgaagcg aggagaacca gatagcgacg agcggacggc       420
     tcacaacgcc atctgaggtg agaagaatag gtcagcggtg agcggacggc tcaacctgca       480
     gcgacctcat agtgagaagt gtgagtcagc ggtgagcgga cggctcaacc cacgacgacc       540
     tcaaaagtgc aagacagcgg tgagcggacg gctcaatcag tgacgatctt gtgaaaagtg       600
     cctgagcgga cggctcgacc cgcaacgttc cagaagtgcg cagtgttaac gacggtgagc       660
     ggacggctca cggtgaggtg ctttgaagcg gaggacgcca atcttgagcg gacggctcaa       720
     cccgcagcgt tccagaagtg agcagtgtta acgacggtga gcggacggct cacggtgagg       780
     tgctttgaag cggaggacgc caatcctgag cggacggctc aacccgcagc gttccagaag       840
     tgmgcagtgt twacgacggt gagcggacgg ctcacggtga ggtgctttga agcgggggac       900
     gccaatcctg agcggacggc tcaacccgca gcgttccaga agtgcgcagt gtttacgacg       960
     gtgagcggac ggctcgcggt gaggtgcctt gaagcggagg acgccagcca attgagcgga      1020
     cggctcaatc tactccctgt aacgacgcac cgtttggacc tcacagaaca agctatccag      1080
     agtaagtaaa atggattaca aatataagaa aaacccaaac gggcactgta agctgtgtgt      1140
     caaagaagat gaacagggaa aaatggcgga atgcaaggag tgtgacagat ggttccactc      1200
     agcatgtctt aatttaaaaa cggttcctag caagttcaca tgtccaaaat gtgaacaaat      1260
     gaagttagaa aaggaacaag ctaggcaaac tataatgcaa actgaacgcc tattatcaga      1320
     gaagatagca gcagaagaaa aagagaagaa agaaaaagca aaatacgaaa aggaaattga      1380
     acggctagaa gaaatcatta gggcagagga aatcttaaat caatcaggga caagccaaca      1440
     cgacgttcac gagctgacta agaatgtcga taaattggta gatgcgtgga gcctcggccc      1500
     aagctgtcgc aagaatgcgt tactggaact cccagagttc tacggaagca gtaagacctg      1560
     gccaagattc aaactgcttt ttaaggaaac ctcgaagacg ggaaaattga caaacttgca      1620
     caatctaagc cgacttcaaa aacacttaaa gggagacgcc ctacgagcag tcagcggtct      1680
     attggttaat ccagaaaacg tcgacgcgat tctcgaccgg ttggataaac tctatggcag      1740
     tccagctagc gtatattcgg cgctattgaa ggacctaatg gcaattaaag gagcgtcctt      1800
     agacaatcca gtaaccataa tcgacttttc gaatgcatta agcaacatgg ttgaaaacat      1860
     ggcaatgcta ggccatgagg aatatctaat ggaccaaagg ctcctccaag atttggtagc      1920
     gaagttatca ccggaactga ggaatgaatg gctaaaagaa gcattgaaat ccgaatcgaa      1980
     ggaggcaaaa acgcttactc aattttccaa atggttgaaa ccaaccgaag aactagcgat      2040
     cgccctcctt gcttcggaag gaaatcaaag atcgaaaccg gtgaaactga actaccatca      2100
     agcaaggcca cgcggggaaa acaaaagagc atgtgccgtc tgcggtagtc atcataaaac      2160
     tgtcgagtgt cgcaaacttt taagtatgcc tagtcaggaa agatggaagg tgtttaagga      2220
     caagaatata tgtagcaatt gctgcgcatc aaatcattca gcgtacgatt gccgctctgc      2280
     cccacagtgc acaattgccg gctgtggtaa aaggcataac accgtcctac atcggcatga      2340
     ctctttcgga caaacacgtt taaactgtca ccaaaacgca gcggaatatc tattccaaat      2400
     tatccctgta acagcgtaca acggagataa atctgtgaac acctatgcgt tcatagatcc      2460
     tggttcttct tccagcctta tgaccgaaga gttaagatct gaactaggag tacaaggacc      2520
     tcggaaacca ctaacacttg catggacgaa cggaaccttc caagtggaag atcaaagtac      2580
     ctcggtcgga attcaaatcc gtggaccaaa caagaggcta ttggatataa aaaacgttcg      2640
     aacagtaaag gagttagatc tacctaggca aagtatcgac gcaaaagaaa tgaagaagag      2700
     attcgcttat cttaaaggga tcagcatgag cagttattct aacgctcgtc ccacaatttt      2760
     attaggtcta cctcacgcct attacaccca agccttaggg caccgagcgg gggaacctga      2820
     cgaacccgta gcacacaaaa cccgactagg atgggttcta tttggtaaag acacagccgt      2880
     tagtgaaacg gataattatc atatcttcac aatggtagaa aaagtaaagg aggaagaaaa      2940
     aactttaaac gacctaatga aaggtttctt ttcgacggaa gagttcggag tgcggggaaa      3000
     caatgaaata ataacctcaa aggctgacgc gagggcactc gacaccatga aaaagacctg      3060
     caaacgaatt gaccagggat acgaaatagg actactttgg aaatatgaca agcctacgct      3120
     tcctaatagc tacgctcaag cccttagccg tttgaaaagc caagagagaa aaatggaaaa      3180
     tgatccgaag ctcaaagaat ggtatttcaa tgaaatctcc tcatacgtcg acaaagggta      3240
     tgcacgaaag gccgacccca aagaactgct ccaaacgaca ggcaacataa actatatccc      3300
     tcatttttcg gtggttaatt taaacaaaca gaacccgaag ccaagacttg tgttcgatgc      3360
     agcggcgaag aatgaaggta tatcactgaa ttcgcaactc tactccggac ctgataacac      3420
     aacccctata ttcggggtgc tatcgcgctt tagagaacat aaaattgcat gctcaggtga      3480
     cataaaggag atgtttcacc aggttaagat cagaaaagaa gatcaatgcg cgcagagatt      3540
     tctttttcga aagtctccct tggaagtccc tcaggtatat gtcatgcaag tcatgacctt      3600
     cggcgccaca tgttcgccag cttgcgctca atacgtaaaa aatagtaacg cgctacaata      3660
     ctctgcatcg aacccacgag cagtgaaagc catcacggaa aaccactacg tcgacgacta      3720
     tctcgacagt tttccagacg tagaatcggc ggcgcaaaca attgaagagg tttgtgaaat      3780
     ccacaacaaa gccaattttt ttatacggaa tttcatatcg aattctaagg agttggtagc      3840
     aaaaattcca aaggacaggg cttcggaaca aaaaacgtac gaccttcatg ataagaccca      3900
     agattttgaa aaggtcttag ggatgtactg ggacacgagg aacgatgtat ttcgttacaa      3960
     acttaaaaac ctttacgaac aaccattaag taaacgagaa atgttagcgt atatcatgag      4020
     gatttacgac ccccttgggt tattagcaaa tattataatt caagggaaaa tcttaatgca      4080
     ggacttatgg aaagccggca ttaattggga cgattcaatc cccgaacatc tacttgttgg      4140
     gtggaacgga tggctcgaaa gaataaagaa agtcgaagaa attgtaatac caagatgcct      4200
     ttcgcaggca tcatcgatta agataaggga gatgcatgtt tttgtcgatg catccgaaaa      4260
     ggctttcagt gcggtagcat atatgagaac gatccacgat caaggagtgg atgttaacat      4320
     aatcgctgcc aaaacgaggg ttgccccgac taaacctttg tcaattccga ggcttgagtt      4380
     acaagccgcc gtgctcggcg tccgactagc cgaaatgata aagaaggaag tcagagtaaa      4440
     gatagacaat gaatattttt ggacagactc caaaacagtt ctggcttgga taaactcaga      4500
     agcgagaaat tacaaacaat ttgtcgcgct acgaattggg gaaattttaa acgataccag      4560
     agcatcgcaa tggcagtggg tagcttccaa aagcaacccc gccgatgaag ccacaaaggt      4620
     gatcctagaa aactcaaaat ggttaaaggg gccagaattt ttacaggacg tggtaataaa      4680
     catgacacaa ccgaaactat tcgtaacgtt cgaagaagtg cgcccagtcc ataccataaa      4740
     gacgataacg aagatcgact ggaacgttat cgcagttgag tggtgttcaa attggcacag      4800
     gctaaaaaga tcgttagcga tcggcttaaa atatatcgat tggctaaagg ccaaaaataa      4860
     cggcaccgaa ttttccagca ccatcaccaa ggcggactta gacaaggccg aacgatacct      4920
     tctaaggaag gtacaatggg aaagcttctc ggaagagatg acgcatttat cactcaagat      4980
     cccgacggct aataacagca acattcgagg tctatgccca atgctagacg aagaaaatct      5040
     gctgagatca cggggtcgct tggaacacgc aaaatacatg acatttgaag caaaatgtcc      5100
     catcattctt cccaagggac atcatgtcac gaaccttata attgcccatt atcacgaaag      5160
     gtacttccac caaaaggcag aatcagtcat ggcggctatc cgccagaaat tttggatacc      5220
     tgacataaga actgcattga aaggcatcat caacaaatgt caatattgta aaaatcaaag      5280
     ggccaaaccg atacctccta taatggcgcc gctgccagaa tgtagaatgg ccgcgttcca      5340
     aatgcctttc agccacaccg gcgtggacta ctttggtcct ctgaatataa ctattggaag      5400
     acgagtggaa aagaggtggg gtgcgttatt tacgtgcctg acgacaagag cagtatattt      5460
     ggaagttgct cacgatctaa gcgcaaacac attcataatg tgtttacgca acgttcaaca      5520
     tcgaagaggt aaaattgaac acttatatag tgacaatggc acgaacttca tcggagcaaa      5580
     taaccaaata aagtcattag tggaacgatg cgcttccgaa gggatcacgt ggcatttcaa      5640
     tccaccagga gctcctcact ttggaggatc gtgggaacgc ttggtcaagg aagtaaaaag      5700
     ccttctcccc acagataaga acttccagga ggccactctt agggccgtat taaccgaaat      5760
     agaatttatt atgaataata gacccctcac ccacattccg cttgaacaag aagatgacga      5820
     accgttgaca ccgttccatt ttctaatagg tcattccggt gaagcagtac ccagtactgc      5880
     tggtaaagag ctgtcacata cgacccgaac caactggaag gctgcgcaag cgatagcgga      5940
     gcagtattgg aaacgttgga ttaaggaata cctaccaaca atctcgaaac gagaaaagtg      6000
     gctaaaacta tccaagccgg tgcaagtaga cgacatcgtc acattccccg acgaaaatag      6060
     gataggaaag tggattaaag ggcgagtcac agaaaccttt gctggtcaag acgggatcgt      6120
     aagatcggtc agactcaagg tagggcaaaa cgagtatcgt aaggcggtgg tgaatctagc      6180
     agttttggac gtaaaaccaa gcgaccaaaa ccaagacaac tccccaccaa cttggggaag      6240
     gaaacgaagc ttagacctaa agctaattaa agagaaggca agcgcactaa atcaaagtat      6300
     atcaaaaaaa cgtcccagag tgacaatcaa tcccgtgaca tggcaattgt cataaaattc      6360
     gtacttgtgg tgtgctgtgc cgtatccgct cttaaaatag agcccgtttt ggaggccggg      6420
     ttgttcttcg atcacgcggg cacgttactt ttagaaaggg gcaagtggga tacactatat      6480
     tttactcgta tacgtcctga gaacgatacg aaattaatat ctacaatcga actagagctg      6540
     aagaacgccg tgttggcaac caatgaaaca gatataaggg tattaaacct aaagacgtcg      6600
     ctagataatg aatgtagata cgcaaggaaa ctaatccaag acaacatcaa gttcagagaa      6660
     aaaagaagtc gaggaatatt cggaatctta aaggactttt tatttggagg cagtgatatc      6720
     gacgagcagc tcgctctgtt tcgaacttca gaagatcaga ggctggcagt tattacaaat      6780
     aaactagaaa gagataacga taaccacagc aaggttgaaa gtcacttgag cacaagaata      6840
     catcgattac aagacggaat aaccgcatta aacaaagccg taaatgaaaa taaaaaactc      6900
     caaatgtcca aatatatcga agaaacacta attctagcaa atgtagtaat tcagggaatt      6960
     ataaccaagt ataaggcact aaccgacaac ccattaacaa acgaagatca gaatgccatg      7020
     attaaggaga taaagacaca acttccgaac aacgaagttc tgaaaaaccc ctttgtaaag      7080
     aacaaggctc tcataaacgg agagattatt cttcacgtag aatatacaat acttagcaat      7140
     gagcatttcg aaatactaaa cgtcattccg attccatgca tgcagaacta ctcaatactg      7200
     aacatcaaaa atgaacggat agctataagc gacaaaggta actacttata cccagaaagc      7260
     tttacgatca taaatgacac gcacgcctta tcgcacgata cgacgattcg caggaactta      7320
     gattgtattg tagcggcgat attgcataag gaatctaata ttacgtgcat ggtatcaaaa      7380
     ttaaatgtcc cgtttacaaa atttgttact ctgcactcgc cgaacaaaat tttgtactat      7440
     acgacacaac caaacaaaat ttatttaaac tgcaatcgaa caataaccaa ccctgctcac      7500
     aatatagggg taatcacgct atctgaaaca tgtagcgtag aaacagatga aataaccatc      7560
     caaccagtga tagcaaggca aaatatactc cacaaaacat attttaaatc acttaaacaa      7620
     atgtcgtcgg tttcgccaat aaacgaaaag aagagcgaag atccaataat agcgataaca      7680
     ataggaatag ccataggcat gatatccgtt gcgatgataa tagcattcgc tattgtaaag      7740
     tggcatcccc gaaatcaaaa gaaaccattc cccctaccgt caaatgatat agaattgtaa      7800
     cccctctgaa aggaattacg ggggtgggga                                       7830
//
ID   BEL-1_AnFu-LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-452
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 707-707 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 452 BP; 117 A; 105 C; 121 G; 109 T; 0 other;
     tgtcgccgac agggtcactc cgttagaagc gcacgccgcg tgtgagacat aagagctgca        60
     tcggcagtct gggtgcagtg gttgatcgag tttcgcgccc caagccggtg ccgcggtttt       120
     cgcggcgtca acaatttggg tgctacgatc aatcgcagcc caaaatgctg gtgcatcgtt       180
     gatcgcacgc accacgaacc ttgccacggc tttgcatcgt cggcaatttg agtgccgtgc       240
     aacgataaaa taagccagca acaggtggtg cgcgtatggt aaacattatt gttaagtaag       300
     caaaaattta gtatttaaga acgttaattt taaccaataa aggcagtatg tctaaaagta       360
     ccccggtgtg gaggcttcag atattagtgc ttgagtcggc gtgaactgcg cctgtctcga       420
     gaaggtttat ccgaaaactc gcataaacta ca                                     452
//
ID   BEL-1_BM-I  repbase;    DNA;    INV; 5595 BP.
XX
AC   nscaf2210;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_BM_;
KW   BEL-1_BM-LTR; BEL-1_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5595
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 581-581 (2010).
XX
DR   Genome; nscaf2210; Positions 4189182 4194776.
XX
CC   Positions [4452-5063] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..5402
FT                 /product="BEL-1_BM-I_1p"
FT                 /translation="MATTSKSQSLFDRNVRKMRSKINAYYSRVQSIYDSIT
FT                 KINESNVDVFMSNASTLDMMRTEFIKSLDDLNDLLASNEDATEPNYESMVA
FT                 FDDLFSRIKYKYSELMSLRHNTQNTANTVVGENKIETYRQCPKLPRLELCP
FT                 FNGELQNWPIFYETFKSIIHENQSLSDSEKIQYLIGKLTGNAQLICQGFMP
FT                 TAENYSVLWQTLVNKYNDKRVLAASYFDTLLNLPVANDADPISLENYIDKY
FT                 SSLVSSLKQLKLECLEDFIFVHLGCKKISLELIKSFEMNYSDSDKLPTCTQ
FT                 FINYIRNQSHILQRAYNISNNNSIRMNKYNSQQSNSNKPRNIRNNNVKTFV
FT                 VHEQKRCIFCGVAEYHQLKNCSKFKSITPKERFSFIKTNRFCVNCLSTSHT
FT                 VRNCTSNEKCSSCSRSHHSLLHFITKGDSGEVPKSVDIATHTDGDQDNAMP
FT                 DSLCACALEQQCFKTVCNQQPTKTILLGTAICNIMDNSGTFLSTARILVDS
FT                 ASQRDLITLEFCKRLNLPIYPSETKQVCGVGDVKNSIEGYCCLTLCSCTEE
FT                 SVRITIQPLVINKIIGELPTSKIDTSSLNYLKHIKLADDRFSQPRGIDLIV
FT                 GSDVFSRILRPHIISRAPGEPVAIETSLGYIIVGQAPVLAPSIDNSYYTHC
FT                 TFGEDNLDNENNACIGNFLKLEDIPDVKPYTEQEEECESLYRQTTTRDSLG
FT                 RYIVSLPFKDTPSKLGDSLQASMRRYLSLERKLLLQPEMRQEYDKVIKDYL
FT                 EKGYLNPCSRNINESSLQYVIPHHGIVRKDKSTTKLRVVLDGSMKSSSGLA
FT                 LNDILQVGPNLQNDLFRIILNFRLFNVAISADIRQMYLRILVKDEDRKFLR
FT                 MLYRFDPSEEIKLYEFTRVPFGLCCSPFLAIRTVRQLVTDEGSQFPLAAPV
FT                 ADSDVFTDDLATSCANEETAVELSNQLIKMFHAGGFDLVKFSSNSPEVLSK
FT                 IPSSHREFEVIEFSPDSYLKILGLNWLPVEDVFTFTVNLRNRECTKRNILS
FT                 VIARIWDLMGFVAPVTLWAKLIIKSLWANNIDWDETPRPEIVAAWHRFVSE
FT                 LPILENVRIPRHTGIVMECIVSLLGFADASEKAYGGVVYLHVYFPQTNKFT
FT                 ITLVCAKSRVAPLRCVSLARLELCGNLILAKLMRAIIDSYSHRCKISNVFA
FT                 FTDSTVALAWIHSSPARWHTFVANRVTKIQDEIHPRNFYFVSGKENPADCL
FT                 SRGLTPSQLMEHPLWFSGPRFAHLPISDWPVKNFDATSMTDIPEMKPAIML
FT                 FTTDDARNDNILYTLACRISSWPKLVRIVLYVLRFIQLVPSKFDISHLKVA
FT                 ETNIIKAVQRVHFDKELKNMKSGKILPSAFQRLRAFVHEGIFRVGGRLENA
FT                 HLEFDSQHPILLPARDHVVNILIDYYHKKYLHTGPQLLMSLIRQNYWILSA
FT                 RNIIRKRVQQCNICYRANPRNQCPLMADLPACRVQETKAFYHTGIDYAGPL
FT                 RIIPYRRRGVRSQKAYICLFICLVTKAVHLELSTDLSTAAFLNAFKRFIAR
FT                 RGPIKVVYTDCGTNFLGTHSYLKEMYKLISSEQYADKFANELRDNNIDWKF
FT                 NPPSAPHFGGIWEGNIRSVKTHLNKIVGNQLLTFEEMLTTLAQIEALLNSR
FT                 PLSVLSSDPCDPQALTPAHFINLTPLKSLPSETITEHSNLIQRKRIVDSLV
FT                 QSFWKRWKLEYLNTLQVRNKWKKDSTPIKTGTVVLLQSENSAPLNWPLGII
FT                 EETFPGRDGVVRVVNVRTKTGTYRRPVVKVYPLPTQ"
XX
SQ   Sequence 5595 BP; 1776 A; 1025 C; 1071 G; 1723 T; 0 other;
     tatttgatca cttcgagccg gatatttaac aataatttaa ccgttgcaca tagattgagc        60
     ggctaccccc aacttgaaaa aactattaat aggtgaacat tttatttaaa tttctttgtt       120
     actacttagt taaaatggct actacttcta aatctcaatc actttttgat cgtaatgtac       180
     gtaaaatgcg tagtaaaatt aatgcatatt actctcgagt acagtccatt tatgacagta       240
     tcactaaaat aaatgagagc aatgtggatg tatttatgtc gaatgctagt actttagata       300
     tgatgcgtac cgaattcata aagtcactgg acgatcttaa tgatttatta gcatcaaatg       360
     aagacgccac agaacccaat tacgagtcaa tggtggcgtt tgatgaccta ttttctcgca       420
     taaaatataa atattcggaa ctaatgtcgt tgcgtcacaa tacgcaaaat acggcgaaca       480
     ctgttgttgg tgagaataaa attgagacct accgacagtg tccgaaatta ccgcgattag       540
     aattatgtcc gtttaatggt gaacttcaaa attggcctat attttatgaa acatttaaat       600
     ccataatcca tgaaaatcaa agtttatctg atagtgaaaa aattcagtat ttaatcggta       660
     aactgactgg taatgctcaa ttaatttgtc aagggtttat gcccactgct gaaaattatt       720
     cagttttatg gcaaacatta gtgaataaat ataatgataa gcgagtcttg gcggcgtcat       780
     attttgatac gttattgaat cttccagtag ctaacgatgc cgacccgatt agcttagaaa       840
     attacataga caaatattct tcgttagtaa gctcgttaaa acaattaaaa ctagaatgtc       900
     ttgaagattt tatttttgtt catttaggtt gtaagaagat tagtttagaa ttaattaaat       960
     cattcgaaat gaactactct gattctgata aactacccac ttgtactcaa tttataaatt      1020
     atattcgtaa tcagtcccat attttacaac gtgcttataa tatatcgaat aacaatagta      1080
     ttcgaatgaa taaatataat tctcaacaaa gtaattcaaa caaacctcgt aatataagaa      1140
     ataataatgt gaaaacattt gttgtacacg aacagaagag atgcatattc tgtggtgtcg      1200
     cggagtacca tcagttaaaa aattgttcta agtttaaatc aattacaccg aaggaacggt      1260
     tctctttcat taaaaccaac cgattttgtg tcaattgctt aagtaccagt cacacagttc      1320
     gaaattgtac gtcaaatgaa aaatgtagtt catgttcacg tagtcatcat tcgctgttac      1380
     attttattac aaagggtgat tcgggtgaag taccgaaatc agtagacatt gccacccaca      1440
     ctgacggaga tcaagacaac gctatgccag attcactgtg cgcatgcgca ttggaacagc      1500
     agtgttttaa gacggtatgt aatcaacagc ccactaaaac tatattgctt ggtacagcga      1560
     tatgcaatat tatggacaat tcaggcacgt tcttgagtac tgcccgaata ttggtagata      1620
     gtgcatcgca acgagatctg attactcttg aattttgtaa gagacttaat ttaccaattt      1680
     atccttccga aacaaagcaa gtgtgcggag tgggtgacgt gaaaaattcc attgaaggat      1740
     attgttgtct aacactttgc tcttgtactg aagaatcagt acgtattaca atacaacctc      1800
     tggtaatcaa taaaattata ggtgaacttc ctacctcaaa gatcgatact tcaagtctta      1860
     attatctaaa acacattaag ctagctgatg acagattctc acagcctcgt ggtatagatt      1920
     tgattgtggg ttccgatgta ttctctcgaa ttttacgacc tcatataatt tctagggccc      1980
     ccggtgaacc tgtagcaatt gagacttcat taggttacat aatagtcggc caggcaccgg      2040
     tattagctcc ctcgatagat aattcatact atacacattg cacctttggt gaggacaatt      2100
     tggataatga gaataatgct tgtattggta attttttgaa attagaggat attccagacg      2160
     tcaagccata cacggaacag gaagaggagt gtgaaagcct ttatagacaa acgactactc      2220
     gtgatagctt aggtcgttac attgtctcgt taccattcaa agatactcct agtaagctgg      2280
     gtgactcatt gcaggcatca atgcgtagat atctttcatt ggaacgtaag ctgctattgc      2340
     aacccgaaat gagacaagaa tacgataaag tcattaagga ctatttagaa aagggatatt      2400
     taaacccatg ttctagaaat ataaatgagt cctcactcca gtatgttatt ccccatcacg      2460
     gcatcgttcg aaaggataaa agtacaacaa aattacgggt agtattggat ggcagtatga      2520
     aatcatcatc gggactggca ctgaatgata tattacaagt cggaccgaat ttgcaaaacg      2580
     acctttttag aataatttta aatttcagac tttttaatgt agcgattagt gccgacatta      2640
     ggcaaatgta cttgaggatt ttagtaaagg acgaagatag gaaattcctg agaatgttgt      2700
     atcgctttga tccaagcgag gagataaaac tatacgaatt cacacgtgtg ccattcggtt      2760
     tgtgttgtag tccgttcctt gcgatcagga ctgtgcgcca gttagtgacg gacgagggat      2820
     cacaatttcc tctcgcggct ccagtagctg acagtgacgt tttcactgac gatttggcta      2880
     cttcctgtgc gaatgaagaa acagcggtcg aactttctaa tcaacttatt aaaatgtttc      2940
     atgctggtgg ttttgatttg gtaaagtttt caagtaactc accagaggtt ctttctaaga      3000
     taccctcttc acatagagaa ttcgaagtta tagaatttag tccagatagc tatttaaaaa      3060
     tactgggact aaactggctt ccagtcgaag acgtattcac attcacagta aatttacgga      3120
     accgcgaatg tactaaaaga aatattttat cagttatagc aagaatttgg gacttaatgg      3180
     gattcgtagc tcctgttaca ctatgggcca agctcatcat taagtcacta tgggctaata      3240
     atatagattg ggatgaaact cctcgccctg aaattgtagc agcttggcat cgattcgtgt      3300
     ctgagttgcc aatattggaa aatgttagaa taccacgaca tactggcatt gttatggagt      3360
     gcatagttag cttattggga tttgctgatg catctgaaaa ggcctatgga ggtgtcgttt      3420
     atttacatgt ttattttcca caaacaaata agttcactat tacgcttgtt tgtgccaaat      3480
     ccagagtagc gccgttacga tgcgtgtcat tggcaagact agaattatgc ggtaacttga      3540
     ttctcgcaaa gttgatgaga gcaattattg acagctattc tcatcgctgt aaaataagta      3600
     atgtatttgc ctttacggat agcaccgtgg ctttggcatg gattcactca tcaccggcta      3660
     gatggcatac gtttgtagcc aaccgagtaa caaagataca ggatgaaata caccccagaa      3720
     acttttattt tgtatcgggt aaagagaatc cagcagactg tctttcacgc ggcttaacac      3780
     catcacaatt gatggagcat cctctttggt tcagtggacc ccgatttgct catctaccca      3840
     tttcagattg gccagttaag aattttgatg ccacatcgat gactgatatt ccagaaatga      3900
     aaccagctat catgctattc acaactgatg atgcacggaa tgacaatata ttatacacgc      3960
     ttgcatgtcg tatttcatca tggcccaagc tggtccgtat tgtactttat gttctccggt      4020
     ttattcaatt ggtaccgagt aaattcgata tttcccattt aaaggtggcc gaaacgaata      4080
     tcatcaaggc tgtacagcga gttcactttg ataaagaact taagaatatg aagtctggca      4140
     aaatattacc gtctgcattt caacggctca gagcctttgt tcacgaaggt atctttcgtg      4200
     ttggcgggcg attggagaat gctcacttgg aatttgatag tcagcaccct attttacttc      4260
     ccgctcgtga ccatgtagtg aacattttga tagactatta tcacaaaaag tatttgcaca      4320
     ccggaccgca gctcttaatg tctctgatac gccaaaacta ctggattctc tctgctcgga      4380
     atataataag aaagcgagta cagcagtgta atatatgtta tagagcaaat ccccgaaacc      4440
     aatgtccatt gatggctgat ttacctgctt gtagagttca agaaacaaag gccttttatc      4500
     acactggtat agattacgct ggcccattac gtattattcc ctacaggcga cgtggtgttc      4560
     gtagtcaaaa ggcgtatatt tgtctgttca tttgtctagt taccaaggca gttcacctag      4620
     aactctcaac ggacttgagc acagcagctt tcctgaatgc attcaaacgc ttcattgcgc      4680
     ggcgtggtcc aatcaaagtg gtctataccg actgtggaac aaactttttg ggaactcact      4740
     catatctcaa ggaaatgtat aaattgattt cctctgagca gtatgcagat aaatttgcaa      4800
     atgaattgcg tgataataat atagattgga aattcaaccc accatcagcc cctcattttg      4860
     gcggtatatg ggagggtaat attcggagcg ttaaaactca tcttaataaa atagttggta      4920
     atcagcttct cacttttgaa gaaatgttga ctacacttgc tcaaattgaa gcattattaa      4980
     attcgcgacc tctatcagtt ttgagttcag atccatgtga ccctcaagct cttactcctg      5040
     cacattttat aaacttaaca ccattaaaat cactaccttc agaaacgata acggaacatt      5100
     ctaatctcat ccaaaggaaa cgtattgtag acagtttggt ccagtctttt tggaaaagat      5160
     ggaaacttga atatcttaat acattacaag ttcgtaataa atggaaaaaa gatagcactc      5220
     ctattaaaac tggcacagtt gtactgcttc aatctgaaaa tagtgctcct cttaattggc      5280
     cattgggtat aatagaggaa acttttccgg gtcgtgatgg agttgtaagg gtggttaacg      5340
     ttagaacgaa aactggtact tatcgtagac ctgttgttaa ggtttatcct ttaccaacac      5400
     agtagtggtt cgatataatt ctacatacat acagtccaca aaatctaatg aaatataatt      5460
     aagtagtaat ttaatagtct aattgaataa taaaagtaat aagtctaaga taataagata      5520
     atttataatg taggtttcat atattattat agtgtttaac tttgaaagag ctttactctc      5580
     tcaaactggg gggca                                                       5595
//
ID   BEL-1_BM-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   nscaf2210;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_BM_;
KW   BEL-1_BM-I; BEL-1_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-378
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 582-582 (2010).
XX
DR   Genome; nscaf2210; Positions 4188804 4189181.
XX
SQ   Sequence 378 BP; 140 A; 74 C; 65 G; 99 T; 0 other;
     tgtttacgct atctgcaatg gataattagc attgatgttt ttgaacgtaa ctgagagcgc        60
     atcgatgtag tcccgcccct ttcccctcct atatcaatga cacttttaaa attgaatttg       120
     aatcgtgcgc atcaaaattg tgcgatcgcg aaaaagtggt gaatattgag tgcagctaag       180
     taagtactta aaaaactgaa agcttttcat caagaacaaa gaaagaagac aggagtggcc       240
     actccatgaa gatagtgcta caaatattat cactacaaag acacagactt tcggtgagtt       300
     cctaaaaata ttacctacta ccaaatatca tatcgattgc gctcaaaaat ataaaaataa       360
     aagaaccaag cccaaaca                                                     378
//
ID   BEL-1_BTa-I repbase;    DNA;    INV; 6257 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6257
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 589-589 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..5491
FT                 /product="BEL-1_BTa-I_1p"
FT                 /translation="MPKLSKRNRKSLNNDDIVNLEDEFGSAPSNLNAASVL
FT                 TAKRNTVYNRVETILKTFEKDLSAENSSQFKIFYERLSTYQEQFDELQAEI
FT                 LSLNASLPDDTQIEFKRTQGKFDSMIHSAETLYLSCCPKIAETASHDSSAS
FT                 SGASRGRIQLPKLPLPRFSGKLEDWRSFYNLFAASVHNEKELPTVRKFQYL
FT                 LSSLEGSARDLVKGLDITETNYDVAWKLLCQRYQCERRHIYYHYNGLLGLP
FT                 EIKDLKHIPNFLTKVREHTQALEGLDHKLQDYSSMLTAVITAKMTFYFRKR
FT                 FDDYRGADVKYPKLESILDFLEKECLQIESSSMDSSSNKAQAKDSQVSRGT
FT                 NSTSNPSKSHNSSHKVFLNSEIVESTNTCELCSGNHGLYKCNKFKRLSPSA
FT                 RKSKVIELRRCTNCLSKKHETAACASEYSCRFCKQQHHSLLCSNQRKNVDG
FT                 ASNSNSPPENIKVHLSSEFDTLPSRNFTSLLGTVLLNVKCPDNSYKPVRAI
FT                 ADSGAMSCFISYECVKRLQLPMYATDAEISGIGNQAVKPLGEVKCTLKPRQ
FT                 NSEPILHARATVLSTITDSIPTQPVTPEVRKFWSQLELADPAFDQVGEIDM
FT                 ILGADLFPYILTGERRLTERNGCALQSIYGWIIIGRVSTSKKPKRQKQKSF
FT                 LSIDGLPLSADFKKFWETEEPQKHHVMSPDDIFCEQQFEKLHYRQPDGRYV
FT                 VPLLLKNPNPVLPNSRALAENRLKSVERKLHKQPELKHAYKEFMNEYEQLG
FT                 HMQLAPSSTEARYYIPHHAVVRENALSTRVRVVFDASMKASNGISLNENLH
FT                 TGPKLQADIVHLLIRFRTHRVALTGDICKMFRQILIRPEDRQYQHILWRDD
FT                 ETSPPKDFELCTVTYGTGPAPYLAHRTMKQHSINERQEFPEACKVLDDAVY
FT                 TDDIFTGHDTVEETVNLRVEITKCCEKGGFPVKKWSSSHAEVLEGLENGDM
FT                 AIPLEFHNDAESTHGVVGVKWHPSSDTFSYNEVNLCGKLTKRGILSDIARI
FT                 FDPLGYITPVALCAKIIIQQLWIVGADWDDPAPPEIGKMWSKVLSQLHLLT
FT                 YLKIPRWIFPSKSKMITLIGFSDGSEQGYGATIYVRSENDEKFNVNLLIAK
FT                 SKVAPVKPLSVPRLELSGANLLAKTFXSTLKALEPSKYRVEKIVALTDSTT
FT                 TLSWITTPPYKLSTYIANRVVSITEKLSPDLWYHVPGDENPSDLASRPVLP
FT                 QNLVNNPLWWKGPNWLSGPEESWKITPIEKIKLKAIPELKNVKKAFIAQTT
FT                 DTLSRFSSLTRLRNSIAWCFRFVSNCRAKIDQKKKNSATKIAQGELSIEEV
FT                 NSSMLTILKLVQLQNFAQDIQALRSGKTVSNQILSLNPFIDPLGVLRVGGR
FT                 LDKSNLPMAAKHPAILPKNAHLTKLIIDFFHRQNLHAGPRLLQSIISQSYW
FT                 ILSARYAIKAQLHKCIICFRAAPRNVAPQMGQLPESRVVPAARCFLKVGTD
FT                 FGGPYLIKDSKRRNAPSHKAYICLFICLATKAIHLELVSDLTTEAFIAALE
FT                 RFTSRRGMCTDIFSDNGSNFKGTNNYLDELYEFLREDKSNEMVTKHLTLKN
FT                 IKWHFSPPTGSHFGGIWEAGIKSVKFHLKRILGDQKLTFEEFTTLLTRIEA
FT                 ILNSRPLCPISSDVEDLNVLTPAHFLIGGPLLSLPEYDWSSTPSNRLSRWQ
FT                 LLQQISQQYWKQWSLEYLNTLQQRAKWRTQAAETLAVGDLVLIKDENAPSL
FT                 HWQMGRVIELHPGKDGIVRVASVKTTXNTLRRPLVKLFRLPVD"
XX
SQ   Sequence 6257 BP; 1790 A; 1474 C; 1272 G; 1716 T; 5 other;
     ttttggtccc tcgggccgga tcctttatta aaataattga gacaccagtc cttaggtgtt        60
     actagtctca tgttttaatt taatgtcctt agatttgttg attgaaataa cagcaatcta       120
     attttcaagt tgcttaaaca ttttttgagt tcaagatttt gtagtttagt cattttgtgt       180
     tcattaattt ctcaaatcca aaatgcctaa attatcaaaa aggaaccgaa aaagtttaaa       240
     caatgacgat atcgtcaatc tggaagacga gtttggaagt gcgccttcca acttaaatgc       300
     cgcaagcgtt cttacagcga aaagaaacac cgtctacaat cgcgtggaaa caattttgaa       360
     gacctttgag aaggatctct cagcagaaaa ctcaagtcaa ttcaagattt tctacgaaag       420
     actatcaact tatcaagaac aatttgatga gcttcaggcg gaaatcctca gcttaaacgc       480
     ttcgctccca gatgacactc aaattgagtt caaaagaact caaggaaaat tcgacagcat       540
     gatacactct gcggaaacgc tgtatctctc gtgctgtccg aaaatcgccg agacagcgag       600
     ccatgactcc tccgcatcca gcggagcctc gcgcggccga atccaactcc cgaaattgcc       660
     cttgccgcgt ttttcgggta aattagaaga ttggcgctcc ttctacaatc tctttgcagc       720
     ttcggtgcat aacgagaaag agttgcccac agtgaggaaa tttcaatatc tcttaagctc       780
     ccttgaaggt agcgctcggg acctagtcaa aggtcttgac atcaccgaaa caaattatga       840
     cgtagcttgg aaacttttgt gtcaacgcta tcaatgtgaa cgtcgtcata tttactacca       900
     ctacaatgga cttttgggac tgccagaaat taaggatttg aaacacattc cgaacttcct       960
     cacgaaagtg cgtgaacata cgcaagcact tgaaggattg gatcacaaac ttcaagatta      1020
     ttcatccatg ctgacagctg tgatcaccgc caagatgacg ttttatttca gaaaacgctt      1080
     tgatgactat cgcggtgcag atgtaaaata ccctaaactt gagagcattc tcgactttct      1140
     cgaaaaagag tgtctgcaga tcgaaagctc ttccatggat tcttccagca acaaggctca      1200
     ggcgaaggat tcacaagttt ccaggggtac caactcaaca tcaaatccgt caaaatcgca      1260
     caatagttcc cacaaggttt ttctcaacag tgaaatagtt gagtctacaa atacttgtga      1320
     attgtgctct ggaaatcacg gcctgtacaa atgcaataaa tttaagcgcc tttctccaag      1380
     cgcgcgaaaa agcaaggtaa tcgaattacg caggtgtacc aactgcttgt ctaaaaaaca      1440
     cgaaactgct gcctgcgcta gcgaatattc ctgtcgattt tgcaaacaac agcatcatag      1500
     cctactgtgt tcaaatcaac ggaaaaacgt cgatggagca tccaattcta attcgccccc      1560
     ggagaacatt aaagtgcatc tttcctcaga gtttgacact ctgccgtctc gaaatttcac      1620
     ttctctcctt ggtactgtgc ttctcaacgt taagtgccct gataactcgt ataaacctgt      1680
     gcgagcaatc gcwgacagtg gcgctatgtc atgtttcatc agttatgagt gcgttaagcg      1740
     ccttcaatta ccaatgtatg caaccgacgc tgaaatttca ggtatcggta atcaagcggt      1800
     aaaacctctc ggtgaagtga aatgcacgct gaaacctcgt caaaattctg agccgatact      1860
     ccatgctcgt gccaccgttc tctctacaat cacagactca attcctactc aacctgtcac      1920
     gcccgaagtt cgaaaatttt ggagtcagct tgaactcgcg gatccagctt ttgaccaagt      1980
     cggcgaaatt gacatgattt tgggagctga tctttttccc tatattctca cgggggaacg      2040
     aagattgacc gagagaaatg gctgcgccct acagagcatt tatggttgga taattatcgg      2100
     ccgagtgagc acatcgaaaa aaccgaaaag gcaaaagcag aaaagctttt tgtccatcga      2160
     tggtctgcca ctcagcgcag attttaagaa attttgggaa acagaggagc cacagaaaca      2220
     tcatgtgatg agtcccgatg acatcttttg tgaacaacaa tttgaaaaac ttcactatcg      2280
     ccaacctgat ggccgttacg tggttccgct cctcctgaaa aatcctaatc cggtgttgcc      2340
     aaattcacgc gcattagccg aaaatcgttt gaaatctgtg gaaagaaaac ttcacaagca      2400
     acctgagctg aaacacgctt acaaggaatt tatgaatgaa tatgagcagc ttggacacat      2460
     gcagttagcc cccagcagta cggaagcccg ctattacatt ccgcatcatg cagtggtgcg      2520
     cgaaaatgca ctatcgacgc gcgttcgtgt cgtttttgac gcctctatga aagctagcaa      2580
     cgggatcagt ctcaatgaaa atttgcacac cggtccaaaa ttgcaagcag atatcgtcca      2640
     ccttttgatc agattccgca cgcatagagt tgcccttact ggtgatattt gtaagatgtt      2700
     ccgccaaatc ttgatacgcc cagaagatag gcaatatcaa cacatacttt ggcgagatga      2760
     cgaaacttcc cctccgaaag attttgagct gtgtactgtc acttatggta ccggcccagc      2820
     tccgtattta gcgcatcgca caatgaaaca acattcaata aacgaaaggc aagaatttcc      2880
     agaagcctgc aaagtgttgg atgacgctgt ttacaccgat gacattttca ctggtcatga      2940
     cacagtcgaa gaaactgtga atctgcgagt tgaaatcact aagtgctgtg aaaaaggagg      3000
     ctttcctgtg aaaaaatgga gcagcagtca cgctgaagtt ttggaaggtt tagaaaatgg      3060
     ggatatggcc ataccgctgg aatttcacaa tgacgctgaa agcacccacg gagtggtagg      3120
     cgtaaaatgg catccttctt ctgacacatt ttcttacaat gaagtgaatt tatgtggcaa      3180
     actcacgaaa agaggcatac tctcagatat cgcaagaata tttgatccct taggttacat      3240
     tactcctgta gctttatgtg caaaaataat cattcaacaa ttgtggattg tcggtgcaga      3300
     ttgggacgac cccgccccgc cagaaattgg taaaatgtgg tcaaaagttt tgagtcaatt      3360
     gcacctctta acttatttga aaatcccaag atggattttc ccctccaagt caaaaatgat      3420
     cacattgatt ggattttcag atggatctga gcaaggatat ggtgccacga tctacgtacg      3480
     ctctgaaaat gacgaaaaat ttaatgtgaa tcttttaatc gcaaaatcca aggtggctcc      3540
     tgtcaagcca ctaagtgtgc ctcgtctaga actaagtggc gctaaccttt tagctaaaac      3600
     tttcgmgagc acacttaaag cccttgaacc ttcgaaatat cgcgttgaga aaattgtagc      3660
     acttacggac tcaaccacga cgttgagttg gatcaccacg cctccgtaca aactgtctac      3720
     ttacatcgca aatcgagtgg tttcaattac tgaaaaattg tccccggatc tttggtacca      3780
     tgtaccaggt gatgaaaatc ccagcgatct ggcatccaga ccagttttgc cgcaaaacct      3840
     cgtaaataat cctctatggt ggaaaggccc taactggctc tctggacctg aagaatcttg      3900
     gaaaatcact ccaatcgaaa agataaaatt aaaggctatc cctgagctta aaaatgtcaa      3960
     aaaagccttt attgcccaaa ctacggatac tttaagccgt ttttcaagcc tgactcgact      4020
     ccgcaactca attgcctggt gttttcgttt cgtctcaaat tgtcgagcta aaattgatca      4080
     aaagaagaaa aattcagcca cgaaaattgc tcaaggagaa ctttcaattg aagaagttaa      4140
     ctcctccatg ctgacaattt taaaattggt tcaacttcaa aattttgctc aagacattca      4200
     agcactacgc agcggaaaaa cggtcagcaa tcaaattcta agtttgaacc ccttcattga      4260
     tcccctagga gtgcttaggg tggggggtag actcgataaa tccaatttgc cgatggccgc      4320
     caagcatccg gcaattttgc cgaaaaacgc tcatctgacc aaattgatca tcgacttttt      4380
     tcaccgtcaa aatcttcacg ccggacctcg cttactgcaa agcatcatat cccaaagtta      4440
     ttggattctt tcagctcgtt atgcgattaa agctcaactt cataagtgta ttatttgttt      4500
     ccgagccgct cccagaaatg ttgcgccgca aatggggcaa cttccagagt cccgcgtcgt      4560
     ccctgccgcg cgctgcttcc tgaaagttgg aacagatttt ggtggtccgt atttgatcaa      4620
     agactctaag cgacgaaatg caccttctca taaggcttac atctgcttat tcatttgttt      4680
     ggcaacgaaa gcaattcact tagagctcgt ctccgatctg actacggaag cattcatcgc      4740
     cgcgttggag agattcacat cgcgcagagg catgtgcact gacatttttt cggataatgg      4800
     atcaaatttc aagggcacaa ataattattt ggatgagctt tatgaatttt tgcgtgaaga      4860
     caagtcaaat gaaatggtca caaaacattt gacattgaaa aacatcaaat ggcacttctc      4920
     gccacccact ggcagccatt ttggtggcat ttgggaggct ggcatcaaat cagtgaaatt      4980
     ccacctaaag agaatattag gtgatcaaaa attgacgttt gaggaattca ctacgctcct      5040
     aactagaatt gaagctattc tcaattctag gcctctctgc ccaatttcct ctgatgtgga      5100
     ggacctcaat gtacttacgc ccgctcactt cctcatcggc ggcccgctcc tgagtttgcc      5160
     agagtatgat tggtcgtcca ctccttcaaa ccgcctctcc agatggcaac ttttacagca      5220
     aatttcacag cagtactgga aacagtggtc attggagtac ctgaatactc tgcaacagcg      5280
     tgctaagtgg cggactcaag cggctgaaac tctcgctgtt ggtgacttag tcctcatcaa      5340
     ggatgaaaat gcaccgtcct tgcactggca gatgggacga gtcatcgagc tgcatccagg      5400
     caaagacggc attgttcgtg tcgcgtcagt gaaaacaacg gscaacacat tgcgtcgkcc      5460
     gctcgtgaaa ctctttcgcc ttcccgtcga ttgagatttg ggcctctkca ttgttgtaaa      5520
     ttttacgttt aaatgtgtgt aaatagaagt attttagtgt tatttctata ggttaaacgt      5580
     tcccatttta actcagcatg aacagctgat ccgtctcgtt cgggagaaaa tacccgctaa      5640
     gggatgaacc ttgcgcagcc tcggctggtt ttatgacttt cttcctgtca cgccgcgccg      5700
     cacgccgagt cgcaaccctc caggccgccc cgtcactttc ttcctttgtt ttgggccact      5760
     tcgagcgatg aatgacctga gccgcggcca gtgcatcgtc cacccccgca tcccctgact      5820
     ggaactgctt tctacagtgc acgtgcaccc catccagacc tctcgcctcg gctcaaaatt      5880
     aggtcatcat cccccgctca aacatcaatg aattagcatt tcgaaaactg atcgagtcag      5940
     ccctttcact cagctcgtca gtcagtctct acgctcgtcg ctaatcagcc cacgttattc      6000
     ttgtgtaaat ttgttaaatt ctctaatttt tatgtaaatt ttaatttgtg tccgctctga      6060
     attgtttgtt aacttttttt tcacaaattc agacattttc tcccctcgaa tgagctttaa      6120
     tgtaatcctc ttaattatct catgtttttt cctgtgccca atgtgtaaaa tttaactgaa      6180
     attagttatc ctctttttca cttggttttt gtttcgaaaa agaaggagag atttcacctt      6240
     ctttttggtg gggggaa                                                     6257
//
ID   BEL-1_BTa-LTR repbase;    DNA;    INV; 714 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-714
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 567-567 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 714 BP; 129 A; 227 C; 151 G; 207 T; 0 other;
     tgttcgagcc cactgtggct ctcccttgtt ccaccgtcca cgcctcaacc gcgcgctttc        60
     tccgcccccg cgcagggaac cgactgtgcg ccgacgagag ggatccctcc agcttttcat       120
     ccctgaccac cagagttcgg ggtctcattt acatgcccgt tcccttgttt tttctacgtt       180
     ttgaaaagat aggggttcgg ccagttctct ggtcgaaatc agacgctctc gactttgccc       240
     tcgtcgcgcc ctagtcggag ctctcaatcc catcctttcc atcccgtgca cgcacgttta       300
     ctgctgcaca cgcccttgct cgcacgtcta ctgcagcttc cctatccttg tgctcgcacg       360
     tgtactgcag caccctgtcc ttgtgctcgc acgtatactg cagcgcacct cctcctatgt       420
     gcacgcacga ctaatgctgc gcctccatcc ttcacctgtc ccttaacgtc tttcccccgg       480
     acataaggat tgaagtgtta tagccctatg tatgtatgta tttgtcgtgt attttccctg       540
     tgtaaagtgt acatattgtt gagaaataaa gattagaact ttaagattaa gatctcctga       600
     tgatgatcca tgtcgtgggc tcgtagcggc aaatcgactt tctgaaggaa tcttacatat       660
     cttggttcta gtcacggctc ctatttctca gctggtccct cgcgctcccg ccca             714
//
ID   BEL-1_Cfl-I repbase;    DNA;    INV; 5694 BP.
XX
AC   AEAB01030939;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_Cfl_;
KW   BEL-1_Cfl-LTR; BEL-1_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-5694
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01030939; Positions    7598   13291.
XX
CC   Positions [4277-4855] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..5227
FT                 /product="BEL-1_Cfl-I_2p"
FT                 /translation="MSVSSETKVLLEAQYDIHGRISRTVDNLRKMGVSNIT
FT                 RDAIQARTGILDSLWQKMETQHELIRTALKDRYKESEYAVSNFIEVAENTY
FT                 VTQRSTLTGYAEKLKGEPSAAPKSEPSQDQAPRTSLPRIKLPMFSGSYEEW
FT                 PSFRDLFLSVIGENSSVSDIERLHYLRSCVKGSAEKLIKSLTVTGDNYQRA
FT                 WVILCRHFENKRELIRSNFFAFTSVSKMKCESAEELGRIHNAVTTAVNAQE
FT                 SIGRPIDTHGMDLLNFLTIELFDSRTRMEWESSISDSTDPPEHDTLTNFIA
FT                 KRILTLNAAKPRVPTKSFEGASRTAKAQHARTGSEHLKCALCQGKHTLMLC
FT                 GDFKAKTASDRKSFVEQNRLCYNCLGNHLASKCQSVKTCPTCKNKHHTTLH
FT                 HAYTLPTSNEVSVLSATHSSSERKAILLATARLHIADRAGDLHPVRAMLDQ
FT                 GSEVSIVSEALVQRLRLPRTSSSVSIIGIGGARSGSTRGRVALSLSSTTTG
FT                 TKLKAVAFVLPRLSAYQGSSVRTLAPWPHIRGLELADPQYQEHDPVELLLG
FT                 AEVCAHILEAGLRKGGPHEPVAQKTVLGWILSGGSSSAPFQGPRNSLQCSV
FT                 DKELDQLVHRFWEQERESPAPVALTPEEEECETLFTTTHRRTASGRYIVRL
FT                 PFSSSPTPLSDTRKPAERLLAAMDLRGRRDPEFGARYREFMQEYENLEHMS
FT                 PVETVSTAGCYLPHHGVLRQTNSGTKLRVVFNGSQRTASGDSLNQRLMVGA
FT                 NLLPALADVLLRWRRHRFVFVTDIEKMFRQILVHPEDRRFQRILRRTEASE
FT                 NARECELNTGTYGRACAPFLAARTLRQLAVDEKARGPRGAPALLHDCYMDD
FT                 IITGADSLHHAVALQTELRELCTAGGFPLRKWAANFEAVLEGVPSDHRLQQ
FT                 AHHSWENEVHSTLGLRWHTASDNFSFAIQPPVASEFTKRRVLAETARLFDP
FT                 LGWLAPVVIRAKILIQSAWLKRLGWDTPLPTEDAKSWQRLLSELPLLENLR
FT                 IKRWLGVDHPAPRIEIHGFADASERGFAAVVYLRVTSGDETAIHLLAAKSK
FT                 VAPIKPVSLPRLELCAAALLTNLTFHLRKTLELVSAPITLWSDSRVTLQWI
FT                 QGHASRWKTFVANRVSHIQEKLPEARWRHIPGRDNPADCASRGVEPRDLIS
FT                 HSLWWTGPSWLPKDPLLWPQSDHAEHEVDVPETRAVVSNLTTQEKTEPEML
FT                 LRFSDLHRLLRVTAWCCRWRGNPPSSREHLPLAPDELEAALLRWIRLVQAH
FT                 HFPKEIAALKRGNASVKGQLSKLTPFLDNHGIIRVGGRLKHAVLSPDERHP
FT                 IIMPPESWLTQLLVRAHHRRTLHGGVQLTLGLLRLRFWIPRGRSLVKGIIH
FT                 RCVTCARWKAAAPQPIMGNLPTARVTPARPFLRTGIDYAGPILIRTAKGRG
FT                 HKAHKGFIAVFVCLATKAVHLEVASDYSTEAFLAAFRRFTSRRGLCEEVYS
FT                 DCGTNFVGANRELRLLFQASSSDGRRIAHSAASDGIRWKFNPPAAPLFGGL
FT                 WEAAVKSTKHHLRRVLGDTTLTFEEMSTFLAQVEACLNSRPLQALSDDHDD
FT                 ITALTPGHLLIGAPLLAVPEPSLSDCNPNLLARWKLLQRMRDHFWERWSRE
FT                 FINSLASRPKWLKDTVSPSVGDLCLLRSDVTPPTRWPLARIVQLRPGGDGV
FT                 TRVVAVRTASSELPRPLAKTVLRPGANTTAPTTPVS"
FT   CDS           4069..4971
FT                 /product="BEL-1_Cfl-I_1p"
FT                 /translation="MVDSAPRQGTPPANAPRRGPAHSWTAPPTLLDSSRPL
FT                 PRQGHNPPVCDVREMEGCSTAAYNGQSPDGTSHSSTPVSAHRDRLRRTDLD
FT                 TNRKGERSQGAQGVYRRFRLSRYQGRAPGGRVRLLHRSLSRCVPAIHFPSG
FT                 PLRGSLLGLRHKFCRRQSGAAPFVPGVVIRRPAHRSQCRIRRDTVEVQSAG
FT                 GTSLRRALGGSGEINQTPSAEGPRRHDPHLRGNVYLPRASGGVSQLPSSSS
FT                 LVRRPRRHHGTHSRSPFDRGPAAGRARALAVRLQSKPLGPLETPPTDARPL
FT                 LGEMVSRIH"
XX
SQ   Sequence 5694 BP; 1178 A; 1855 C; 1523 G; 1138 T; 0 other;
     tttctggtcc ttcgagccgg atcccaacat cctccgcgtc cgctgtctcg tgagtgatcc        60
     tcccagtgct gtgcagtttg tggcgtgtag ttacctctga aacagaagga caatgagtgt       120
     tagttccgag acaaaggtgc tgctggaggc ccagtatgac atccacggtc ggatctcccg       180
     caccgtagac aatctgagga agatgggcgt gagcaacatc actcgtgatg ccatccaagc       240
     ccgtaccggc atcctggaca gcctctggca aaagatggag actcagcatg agctcattcg       300
     aacagcgctg aaagacagat acaaggagag tgagtacgct gtatctaatt tcattgaagt       360
     cgcggagaat acgtacgtga cgcaacgtag cacgttgact ggctacgctg aaaagctcaa       420
     gggcgagccg tccgccgcgc ccaaaagcga gcctagccag gatcaggctc ctaggacctc       480
     gttgccgcgc atcaaactcc cgatgttttc gggatcctac gaagagtggc cctcgttccg       540
     cgacctcttc ctgtcggtca tcggggagaa ttcgtccgtc tccgacatcg agcgcctcca       600
     ctatctccgg tcttgcgtca agggatccgc tgaaaaatta atcaaatcgt tgactgtgac       660
     cggcgacaat tatcagcgcg cgtgggtgat tctgtgcaga cactttgaaa acaagagaga       720
     gctcattcgc tcgaatttct tcgcgtttac ctcggtttcc aaaatgaagt gcgagtccgc       780
     ggaggaactc ggtcgcattc acaacgccgt tacgaccgcc gtaaacgcgc aggaaagtat       840
     aggaaggccc atcgacactc acggtatgga cctccttaac ttcctgacga tcgagctctt       900
     cgattcgcgc acccggatgg agtgggagtc ctcgattagc gactccaccg atccgcccga       960
     gcacgacact ctcactaact tcatcgccaa gcgtattctc acgctgaatg ccgccaagcc      1020
     gagagtaccg acaaagagct ttgaaggtgc gtcgcgaacc gcgaaagctc agcacgcaag      1080
     gaccggttcc gaacatttaa agtgcgcgct gtgccaaggg aagcacacgc ttatgctgtg      1140
     tggtgacttc aaggcgaaga ccgcgagcga ccgtaagtcc ttcgtagaac agaacagact      1200
     gtgctacaac tgcctcggga atcacttggc ctcaaagtgt cagtctgtca aaacctgccc      1260
     aacgtgcaaa aacaagcacc acactacact acaccacgcg tacaccctgc ccacttccaa      1320
     cgaggttagt gtcctgtctg cgacgcactc ttcgtccgag cgcaaggcga tcctcctcgc      1380
     gacagcccgc ctgcacatag cggatcgcgc cggggatctt catcccgttc gagcgatgct      1440
     cgatcagggc tccgaagtgt ccatcgtctc cgaagcactg gtccaacgtt taaggcttcc      1500
     ccgcacaagc tcctcggtgt ccatcatcgg catcggcggg gctcgatccg ggtcaacccg      1560
     cggcagagtg gcgctcagcc tctcctcgac gactacgggg accaagctca aggccgtcgc      1620
     tttcgtgcta ccacgcctgt cggcgtatca ggggtcgtct gtgaggaccc tcgccccctg      1680
     gcctcacatc cgcggcctcg agctcgccga tccgcaatac caggagcacg atccggtcga      1740
     gctgctgttg ggtgcggagg tctgcgccca catcctggag gccggccttc gaaaaggtgg      1800
     acctcacgag ccggtcgccc agaaaacggt cctaggatgg atcctgtcgg gaggatccag      1860
     ctcagcgccc ttccaaggtc cccggaactc cttgcagtgc tctgtggaca aagagttgga      1920
     tcagctcgta caccgttttt gggagcagga aagggagtcg ccagcccccg tggcgctcac      1980
     gccggaggaa gaggagtgcg agactctctt cacaaccact caccggcgaa cggcgtccgg      2040
     acgatacatc gttcgtctcc ccttctcgtc ctcgccaacg ccgctcagcg atacccggaa      2100
     gcctgccgaa cgcctcttag ccgccatgga cctccggggc agaagagacc ctgagttcgg      2160
     tgctcgatat cgggagttta tgcaggagta cgagaacctg gaacacatga gtcctgtgga      2220
     aacagtcagc acggctggct gttacctacc tcaccacgga gtcctccgtc agactaactc      2280
     cggtaccaag ctccgcgttg tattcaacgg gtcgcaacgc accgcctccg gggactctct      2340
     caaccagcgc ttgatggtcg gcgccaactt gttaccggcc ttagctgacg tcctccttcg      2400
     ctggcgtcgg caccgcttcg tgttcgtcac ggacatcgaa aagatgttca gacaaatcct      2460
     cgtccaccca gaggatcgcc gcttccagcg gatactccgg cgcaccgaag catctgaaaa      2520
     tgcaagagaa tgcgagctta atactggcac gtatgggcgc gcctgcgctc cgttcctcgc      2580
     cgcccgcacg ctccgccaac tcgccgtcga cgagaaggca cggggtccga ggggagcgcc      2640
     cgctctactc catgactgtt acatggatga cataattacc ggggctgact cgttgcacca      2700
     cgccgttgca ctgcaaacgg agcttcgaga gctttgcacg gcgggcgggt ttccacttcg      2760
     caagtgggcc gccaactttg aggccgtcct agagggtgtt ccctccgacc accggctcca      2820
     gcaggcgcac cactcctggg agaatgaggt acactccacg ttgggcctgc gctggcatac      2880
     cgcctccgac aacttctctt tcgcgatcca gcccccggtc gctagcgagt tcaccaagag      2940
     gcgagtattg gccgagacag cgcggttgtt cgacccctta ggatggctcg cccctgtcgt      3000
     tatccgcgcc aagatcctca tccagtcggc gtggctgaag agactaggtt gggacactcc      3060
     gctcccaacc gaggacgcta agtcttggca gcgcctcctc tccgaactcc ctttgctgga      3120
     gaacctccgg attaagcgtt ggctgggcgt ggaccacccg gccccgcgga tcgagatcca      3180
     cgggttcgcg gacgcgtctg agcgcggttt tgcggccgtc gtctatctcc gcgtaaccag      3240
     tggcgacgag acggccatcc acctcctagc tgcaaaaagc aaagttgcgc ctattaaacc      3300
     agtgtccctg cctcgcttag aattgtgcgc cgcagcccta ctcaccaatc tgacgtttca      3360
     ccttcgcaag accttagaat tggtttcagc tccgataact ctgtggtcag actcccgggt      3420
     gacgctccag tggatccagg gacacgcttc cagatggaag accttcgtcg ctaatagggt      3480
     gtcccacatc caggagaagc ttccggaagc gcgatggcga cacatcccgg gacgagacaa      3540
     ccccgccgac tgcgcgtctc ggggagtaga gccccgggac ctgatcagcc actccctctg      3600
     gtggacagga ccgtcatggc tccccaagga cccattgctc tggccacaga gcgaccacgc      3660
     cgagcacgag gtcgacgtgc cggagacgag agccgtcgtc tccaacctga cgacccagga      3720
     gaagaccgaa cctgagatgc ttctcaggtt ctccgacctc catcgcctcc taagagttac      3780
     tgcgtggtgt tgccgatggc gaggcaatcc accgagctcc agggagcacc tccccctcgc      3840
     gcctgacgag ctagaggcag ccctgctccg ttggatccgc ctggtgcagg cacatcactt      3900
     ccccaaggag atcgccgctc tgaaaagggg caacgcgtca gtcaagggtc aactgtcgaa      3960
     actgaccccc ttcctcgaca atcatggcat tattcgagtc gggggccggc tgaagcacgc      4020
     tgtgctctca cctgatgagc gccatccgat catcatgcct ccagagtcat ggttgactca      4080
     gctcctcgtc agggcacacc accggcgaac gctccacggc ggggtccagc tcactcttgg      4140
     actgctccgc ctacgcttct ggattcctcg aggccgctcc ctcgtcaagg gcataatcca      4200
     ccggtgtgtg acgtgcgcga gatggaaggc tgcagcaccg cagcctataa tgggcaatct      4260
     cccgacggca cgagtcactc cagcacgccc gtttctgcgc accgggatcg attacgccgg      4320
     accgatcttg atacgaaccg caaaggggag aggtcacaag gcgcacaagg ggtttatcgc      4380
     cgttttcgtc tgtctcgcta ccaaggccgt gcacctggag gtcgcgtcag actactccac      4440
     cgaagccttt ctcgctgcgt tccggcgatt cacttcccgt cggggcctct gcgaggaagt      4500
     ctactcggat tgcggcacaa attttgtcgg cgccaatcgg gagctgcgcc ttttgttcca      4560
     ggcgtcgtca tccgacggcc ggcgcatcgc tcacagtgcc gcatccgacg ggatacggtg      4620
     gaagttcaat ccgccggcgg cacctctctt cggcgggctt tgggaggcag cggtgaaatc      4680
     aaccaaacac catctgcgga gggtcctcgg agacacgacc ctcaccttcg aggaaatgtc      4740
     taccttcctc gcgcaagtgg aggcgtgtct caactcccgt cctcttcaag ccttgtccga      4800
     cgaccacgac gacatcacgg cactcactcc cggtcacctt ttgatcgggg ccccgctgct      4860
     ggccgtgccc gagccctcgc tgtcagactg caatccaaac ctcttggccc gctggaaact      4920
     cctccaacgg atgcgcgacc acttttggga gagatggtct cgagaattca ttaactcact      4980
     ggcttcccgg ccaaagtggc tgaaggacac cgtcagcccc tccgtaggcg acctgtgcct      5040
     actgcggtcg gacgtcacac cgccgaccag atggccactc gcccggatcg tccagctgcg      5100
     ccctgggggt gacggcgtga cacgagtggt ggcagtgcgc accgcgtcct cggagctccc      5160
     ccggccgctt gccaaaaccg tcctccggcc cggagccaac accacagcac caacaacccc      5220
     ggtctcctga gcgtgaaaga tcgcattttt tttttcatcc tccttttttt ctattcatta      5280
     taatcactgg tacttaccgc gacatcaccg ataagagtac cgcgcgtaat caccgctttc      5340
     tcacatgcga taatcacacg cgaaccgcgc taccactctt cattcttttc tcaccgacac      5400
     ttcacctcac ttgaatcgtt catcacccgc tgtcactcaa gcatcactgc actcgcgaga      5460
     tcatccgcta aaaccccttg caatcagctc accgcattca ctgtatattc ttcattaccg      5520
     caccacttca tattacggag gattctatcc gactgcacaa cacgtgctct cgcgtgacgt      5580
     cacacattcc attgattgat cgcgatcaat ggctcgccga tagtatcagt gcgacatctg      5640
     tccgtacccg cgcccaccca ggaatttcgt cacgcactga cgaggcgggc ggga            5694
//
ID   BEL-1_Cfl-LTR repbase;    DNA;    INV; 1184 BP.
XX
AC   AEAB01030939;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_Cfl_;
KW   BEL-1_Cfl-I; BEL-1_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-1184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01030939; Positions    6414    7597.
XX
SQ   Sequence 1184 BP; 358 A; 361 C; 209 G; 256 T; 0 other;
     tgttcaaaat gcataaagtc acggaaaccg cataattaaa gccgcatttc ccaccccata        60
     atttcgagga ttttggaaag tcaacggcgg tcgagaatct tctcgagacc tctattcttt       120
     aacaaaaacc cgaccgttcg agcaatctct gtttgcgccg cgtataaaaa aaacgctcga       180
     taacaacatt gtcaactgcc gccggaatcc acgaggcgaa cgggcatgcg cgcccgtgcg       240
     tcacgatcag ctgatggcca atcagctgat ccaaaagagt tgcgcgcatg tcaacagtga       300
     agaatattaa ttctgacctc atcggcggcc aatcatgtgc ggcgccgtgg ggtcaccgcc       360
     acactttaaa attaattggg ccacgtcgca acggagccca aaatccgccc cagtatataa       420
     cgggcccagc gcgcgggccc ggccaagtct cgcactttac gccttttcgc tcacctattt       480
     ctatttcgac gcaccgctaa aacattacac gaccgctctt ttctcacgga tcaccgcttt       540
     cgattttcgg aaaattctcg aacctaaacg cacgacgaca aaattctcga acctaaacgc       600
     acgacgacaa aattctcgaa cctaaacgca cgacgacaaa attctcgaac ctaaacgcac       660
     gacgacaaaa ttctcgaacc taaacgcacg acgacaaaat tctcgaacct aaacgcacga       720
     cgacaaaatt ctcgaaccta aacgcacgac gacaaaattc tcgaacctaa acgcacgacg       780
     acaaaattct cgaacctaaa cgcacgacga caaaattctc gaacctaaac gcacgacgac       840
     aaaattctcg aacctaaacg cacgacgaca aaattctcga acctaaacgc acgacgacaa       900
     aattctcgaa cctaaacgca cgacgaccgc tatctctttg gacttcgcta aaccgctcgc       960
     tcgcttcacc gcacgcgata tcgcgcacga taatcgcacc gcttcaccgc accgctcgtt      1020
     tcattacgaa ttaccgcgca ctggacactt gtaattcttt caccttttct tttactgtgc      1080
     actgactaca ttaaacttct gttattttta ttgaaagttc aaagttactc tttcactaca      1140
     cgaatccact atccacgatt cactgccgga cttcctcgcg aaca                       1184
//
ID   BEL-1_CoFl-I repbase;    DNA;    INV; 5844 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5844
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2316-2316 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 5844 BP; 1649 A; 1230 C; 1199 G; 1761 T; 5 other;
     tttggcgcct gaataggcat ttgatgtgac cgagtataaa gtggacgaga ccgcgtggct        60
     tgccattaat tacgctccca taagaagagc ggccatcttg actgctgcgc tcaacgatcg       120
     gacagacggc aaggcttctc ggagctggtc ttgttcatcg agatagtgag taaagtgcga       180
     tatatcattg tctttctgtt tagttcctca ctactctcga cgttgctgca cgcccttccc       240
     acttgcctcc ctgcaggacg tgcaaccctg gcgcacacat acacatcgag ggtgctacta       300
     ctgttgctgc gggccatgag ccccagcgta cacacacaca catcgagagc gctactactg       360
     ttgatgcggg ccgtgagccc cggcgcacac acacaccgag aacgctgctg tggctggttg       420
     ctggctttaa gagccctgac acacacacgt caagagcgct actgctgttg gcmatgagag       480
     ccttggctaa ctaccttact actctgctgc aaatagcaga agtataaatt tgaatgatta       540
     gagasattaa gaaatttacg tttaattata tataagtgcg tatcgtttag attagtgttc       600
     cgttaaaact ttgccttttc tctcgtcatt tcaatttgtt acttaaaatg gaaaccctat       660
     ataaggaaca agttaaaata catacgaaaa taagtaatta ttttgagaac tttaagaaat       720
     ctggtagaga gaaaatgact agagggaggg cggagacttc aatagaagcc ttagataaac       780
     ttttgttaaa atttaatgag aatcatgaag agattatgtc aattactact gtagatgaga       840
     atcacttata tttcacatca gagttactcg atgaagtcga agatctgtat tatgcagtta       900
     aagggggttt tatcgaattt attagaaagg ttaacgctca agagccaccg gtaattcctc       960
     caactcaatc aaatccgata gttcagttaa caactaactc gtatctctct cgtattgaac      1020
     tgcctaaatt ctcggggaag tattctgagt gggagaactt tcgtgatact tttcgatctt      1080
     tagttcatag gaaagacgac atagacaata ttgtaaaatt ccaccaacta cgtgcgcaca      1140
     taagtggaga agctctcgaa atgattaaat ctattcaatt gactgccgat caatatcctt      1200
     tagcttggca gaccttgtca aattattacg atagtcagcg ccgtctcgtg aacaattatc      1260
     ttcaaggtat tatttcatgt aaacctatga aatcggaagc agggtcagaa ctgaagcgca      1320
     ttagtaaaga gatgctcaat ccgatggact cacttaatgc cctgggccgc gacttgggaa      1380
     ccggtgacct ttatattgct ctagttgtta gcaaatttga tgtttctact aataaggatt      1440
     ggcacaagtt tctcggaagt agtacagaac cacccactct cgctaagtta cgtgaattca      1500
     tatcgtctca gattataact ttagaatctt gtgagatcgt taacactgcc ccaaagtctc      1560
     aagtagtgaa atcaaattct agatacccct ctacggtctc ccaccaatcc catgtttctt      1620
     ctgagcccac tgaagaccag cgtgctgtta aggaaatgct gacttgttta ctgtgcaaag      1680
     gcgctcacac tttgagtaaa tgtgatagtt tcaaaactct ttccgtcgag gctcgtaatg      1740
     aatttgttgt aaaggataaa ctatgtttca attgcttagg tcggcatcgg ttgaaggatt      1800
     gcaaatccaa gtttagttgt ctgacgtgta agagaaggca ccataccctc ctgcatttac      1860
     aaaagcttgc tcagagtcag gaccaccagg atcataaaag gagtgataat aatttcccta      1920
     acactaaagg acccgattct aagcaagctt cgcatcatgt cgagtcgcct ccctttagtg      1980
     gaattggtgt attgttagct acggctcgtg tatatgtcat tggtccaact ggtgtacgtt      2040
     tgttagttag agttcttatc gaccaatgct cgcaatgctc cattgtgtct gattctcttt      2100
     gcgacgtatt gaagctgaaa tgacagcatt cgagcattcc catctctgga tctggtggcg      2160
     ctattgtagg agtggccaag gggattgtta gttttgaaat aagcccaggt ttccatcaca      2220
     gttcaagatg ttggtagaag ctaaggtttt accacaggta cccacaattc actagctttg      2280
     ataaaataga cataatccta gaagctgaag ttcatgcaag ggttgtagag gaagaaatta      2340
     aaagaggtag tcccgatgaa ccaattgcca ctcgtacttt tctaggttgg atcttgtcgg      2400
     gtccaatggg ttcagttaaa tctcttactc gtagtactgt ctcgttacat tgttcagaag      2460
     agccccagct gctaccattg ttgctacgat tttgggagat agaggagatt cccggtagtt      2520
     cacagcaaca attaacacct gacgagataa attgtgagaa tcatttttct aatacacact      2580
     caagagacga gtcgggtaga tatatcgtca gaacttcaca acttgtatgt taaattcatg      2640
     caagagtatc aagagctaga ccacatgtgt gaagttaata ctgatttgac taaagagtgt      2700
     tgggttatgc cgcatcacgg tgtaatcaaa ctgtcgagct ccactactaa acttcgtacc      2760
     gtgttcaatg gctcagcaaa ggtttcttct ggtacttcat taaatgagct tctccattca      2820
     gggcccaact tactccctag tcttcctgat cttatttcta actggagaaa ctacaaattc      2880
     gcctttatat ccgatatcga aaaaatgttc cgacaaatct ggattcatga gttagatagg      2940
     aagtttcaat gcatatattg gcgattcaag ctctcgacac ccataaaaat ttactcgtta      3000
     aagactgtta cttatggatt agcttgttca cccttcttag ctacgcgcgt tataaagcag      3060
     ttagctgttg attacaatga agcttatcct ttagcttcca cggtattgag caatgaaatt      3120
     tatatggatg atatattatc cggaggtcat tcactaattg aaactcaaaa aaaaagaaat      3180
     caattgatta acgtgaccaa ccttggaggt ttctccttgc acaagtggtc cgctaatgat      3240
     gataaggttt tggaaggtct gcccaatact ttactagcgg ccactccgac gattaccata      3300
     agtgattcag aagtttctgt ccaagttctt ggactcgtgt ggttaccgtc cgaggatgtg      3360
     tttcgttatc gtatctgtga aacccctacc cgtgaaatat ggtccaaaag atctatactt      3420
     tctcacatag cttggttgta tgaccctctt ggttggttag ctccaattat cgtttatgtt      3480
     aaaattcttc tacaatcact gtggttagta aaacttgggt gggactctcc agttcctaaa      3540
     gatatatcga ataactggtt gcattggttg tcagaaatac agaaattaaa tgagattaaa      3600
     gtccctaggt ggaatcaatt tactcccaca gtccaactga tcgaattaca tggttactct      3660
     gacgcctcaa aatccgctta tgccgcggtt ttgtatactc gcatagttca aggggagcaa      3720
     gttagcgttt cacttctgca ctccaaaaca agggtagctc cgttaaaggt tattagtatt      3780
     acgcgacttg aactttgcgc ggctcaccta ttagccaaac tagccagtca tttttttgaa      3840
     aattcgagga tacgcatcaa ttctatacac ttatggttgg attcaaaaga catgttacac      3900
     tggataagtg ctcaaccatc taaatggccc tcctaacgct atttggcacc atgtatcggg      3960
     taaattgaac cctgctgata ttgcctctcg aggtaccagg ccatcccagt tattagaaca      4020
     ttcttcgtgg tttcttggcc ctraaatcyt ccaccaactc acccctgaat tccctgcgtt      4080
     caaactcgat tcagaacttt caaacgtgca agtcagcgaa tcaccttctc ccactagtca      4140
     tcaacagact ctgttgccta acacttggga cctgtattat agattttctt gtttaggcaa      4200
     acttctacgc gtaacggcgt attgttttag attcttttac aaattgctaa atcgaattgg      4260
     tcgaacatct cagttacctt tccttaatat agtcccaata gcttctcgtt ctaactttac      4320
     gattaccgtt cctgaactta taagcgtaaa attgtttatg gttcatctac atcaaaccat      4380
     acatttcaaa tcagagttga agttgctgag cgatgctaaa gttaaaataa cctctgattc      4440
     tgctcaacaa gaaactataa gtttaccccc taacaactca ttgattaagc tcaagccatt      4500
     tctcaaagat gggttgatta gagtcggtgg tcgtttgagt cattcactat tactcttcga      4560
     agttaagcat ccattagtat tgacttcctt ggatcatttt actaagttga ttatagaata      4620
     tgcccacaat ttgacgcttc atggtggtac tcaacttact ttaagtacat gtcgtcgcga      4680
     gtattggatt atccgaggac gacaaagtgt tcgctctgtc attactaaat gctttacatg      4740
     taaacgctac tctgctaaaa cttcgtatca aatcatggca gatctgccta gcgctagagt      4800
     tagacccact gcagcctttc agaagacagg tgtcgattac gctggaccct ttcccgttag      4860
     attggccaaa ttcagaggta aaggcacaac taagggatac gtggtcatat ttgtctgnat      4920
     gagtactcgg gctgtccact tagagattgt tgaagactat agcgctgaag gctttattgc      4980
     agcattccaa cgtttcatct ctagaagggg gcattgctcc gatctgtata gtgatagagg      5040
     aacaaatttc gttggcgccg acactgagtt gagacgccga tggaccgagc tttgcaattc      5100
     ttacgatcta attacacaat tgtcaacttt aaaaaccaat tggcacttta atgctccagc      5160
     tgccccccac tttggtggag tttgggaagc agctgtaaag tctaccaagc atcacttaaa      5220
     gagagtagta ggtaatcaag tcttcacatt tgtggaatac tctacgttat tgtgtaaaat      5280
     agaagcatgc ttgaattcgc gtccaatctc tcctttgacc gatgatccgt cagacctgga      5340
     aagtttaact cctgctcacc tacttaattt gaaaccggtc acaatactgc ctgaaactga      5400
     tttgtcagat gtgaaggtct cgtgcatgca gcgttggaga cttatctcgc agttatccca      5460
     gagtttttgg cgtagttggt ctcaggacta ccttacatcc ttgcagcaaa gaacaaagtg      5520
     gactgtccct cagagatcgt ttcaagtagg tgatttagtg attattaaag gggaaaactc      5580
     tccacctggt tgttggcccc tagctagagt gttagaagta tttcctggcc ctgattcaaa      5640
     agtgcgagtt gtttaaagtt aatacagctg atactactct tgttcgacca atcactaagt      5700
     tgatattgtt gattggtaat gaagaattag atagtaagta atgtagcgaa aattgcgttt      5760
     ttatcttaca ccttagttaa ggttaaattt tcttgattgt ttaagttaat tgcatctcca      5820
     cccgtcgaag caaaggcggg ggaa                                             5844
//
ID   BEL-1_CoFl-LTR repbase;    DNA;    INV; 475 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-475
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2278-2278 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 475 BP; 142 A; 96 C; 85 G; 152 T; 0 other;
     tgtttagaat gaagtcatag tttggcgcgc tcaataatac tacttaataa atcttgatga        60
     tatcgaggcg aacctatgag aatttgacgc gcgtcgtccc ttttatccaa tcctcgcact       120
     tgtaaagaga gcagcggctc tctcttctct gcgagaacga cgcgagtcag tcagtccgtg       180
     tccgatcgtc gagcccctac atactcaagg cgagcgctct atcgtttcaa ttcgagtctc       240
     aacacattta aataattttc ttgtaaactc gctccacgtt caggcattaa ttatatttgt       300
     attattcgta attgatcgta gaagtaagaa agttaaaata gttaaaggtg taataaggat       360
     tgaagttact tatattaaag tgaaattagt tataaacaag tgtttttcaa ttcttgtgca       420
     ttattactca attactggag tacgaacccc tcaattcaat tcactttccc aaaca            475
//
ID   BEL-1_CQ-I  repbase;    DNA;    INV; 6864 BP.
XX
AC   AAWU01033868;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_CQ_;
KW   BEL-1_CQ-LTR; BEL-1_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6864
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 155-155 (2011).
XX
DR   Genome; AAWU01033868; Positions   30630   37493.
XX
CC   Positions [5812-6390] - Integrase core
CC   'AAACT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1403..4741
FT                 /product="BEL-1_CQ-I_2p"
FT                 /translation="MAPRKSLLGPTLKALTVKYQELQAALNDIFIFADKFK
FT                 AETTASQVSVRLESLNKLWDVLCTTLVEIKSHKDYSPEDDPTYKKDRETLT
FT                 EGYYRVKSLLLDKLKERQEVPCEPTHNDTIVGGTDHARLPQIKLPMFKGNI
FT                 DEWLSFRDLFLSLIHWKSDLPDVEKFHYLKNCLDDKPKRIISGLSTTSVNY
FT                 KLAWDRLQRYYNNHKVLKQRLVQSLFTLPTLAEESATDLHSLVDEFERVLN
FT                 TLDQVVSPVDYKDLLLVNLLVTRLDPVTRRAWEEVSTAKDLVRDSLGDFAD
FT                 DSREESANDTTKDTLKDLCDFLNRRIRVLESLPPKTVNSRAVQHQQQQYVP
FT                 KSKAKKVSYSTVQHAGYSCVACKDNHLLYQCSAFQRLAVSERDALLKTHSL
FT                 CRNCFRTGHQAKNCTSKYSCRNCKGRHHTLVCFQQQPERDNAVTALAVAGS
FT                 NNPSNSKETQGPTTSHVANMAATNPSVSGAATQAASQVLLATAVVIVEDDD
FT                 GNRYPARALLDSGSESNFISERLAQLMKVTREKVDISVLGIGQSGTRVKHK
FT                 IHATVRSRLSNFERDMNFLVLSKVTVNLPTTTIATNGWSIPDGIELADPAF
FT                 FQSKKVDIVLGIECFFEFFETGRRIPLGDNLPALNESVFGWVVSGGLSVPC
FT                 NSTQVKCNVSTSEKMETLMARFWSAEDVGLDDAFSPAERRCEENFQHTVQR
FT                 LSDGRYSVSMPKVEGGISRLGESKEIALRRLHATERRLARDANLRKQYTDF
FT                 MDEYLELGHMSKVEATTPTQVNRCFLPHHPVVKEASITTKCRVVFDASCKT
FT                 SSGVALNDVLLAGPVIQEDLRSIILRSRIKPVMLVSDVEKMFRQIMVHPEE
FT                 RPLQSILWRFSPDEEVGIYELKTVTYGTKPAPFLATRTLKQLATDDGPRFP
FT                 LAARAVNQDTYMDDVITGAEDVQSAIELRKQLDEMMLRGGFKLRKWASNRQ
FT                 EVLAGIAEENLAISMEEINLDTDPGVKTLGLTWMPKTDTLKFQFNIPDLGK
FT                 VPELTKRFILSTIAILFDPLGLLGPVIVTAKIFMQSLWTLLNPNGERLDWD
FT                 EAVPEMVGEVWRRFHSQLALLNELRITRASSALKCSRWNCTSFLTHLRRPL
FT                 EAVRI"
FT   CDS           4684..6783
FT                 /product="BEL-1_CQ-I_1p"
FT                 /translation="MELHFFSDASEKAFGSGAYLKSEDPKGRIFVNLLTSK
FT                 TKVAPLKSQAMPRLELRGGVLSAELYVQILQSLKIKIPTFFWVDAMCVLYW
FT                 LQSPPSTWVTFVANRVAKIQALTEGCVWGHVPGVENPADFLSRGVMPADLI
FT                 DLVPFWKPGWVKKTNEQRQPQPKIVTTEEAEEERRNTAASVAAATTAEFNV
FT                 WFISHFSSYPDLVRRTAYWLRLKDLLRMPKEKRFKSDLLTVAELKEAEFAL
FT                 IRLVQKQAFADEWNKLTKGKPVANSSPLRWFNPYISDEQLIRVGGRLRHSL
FT                 ESEDTKHPIVLPARHQLARLLFRHFHEKLLHAGPQLVLGVVRLRFWPLGGR
FT                 SVIREVIHHCKECFRSKPVAVQQFMGELPSARVTTSRPFARTGVDYFGPLY
FT                 VRPAPRRPAVKVYVALFVCLCTKAVHLELVTDLSTERFIQALRRFVARRGI
FT                 CDDIYSDNGTNFVGARNKMAELLLLLKDRKHRDIVSKDCSNQGIKWHFNPP
FT                 SAPHFGGLWEAAVRSTKKLLLKTIGETPVTPEDLNTLLVQVEGCLNSRPLT
FT                 PMSDDPNDLEPLTPAHFLVQSSLQTVPDADLSAIPMNRLDKFQTVQRMLQD
FT                 FWTRWRREYLCQLQGRVKRWKPPIQIEAGKLVVIKDENSPPMRWKMGRIFE
FT                 VHPGEDGVVRVVTLKTADGYLKRPVEKLCILPLPEYSDAMESTDADLQTQS
FT                 "
XX
SQ   Sequence 6864 BP; 1745 A; 1781 C; 1749 G; 1589 T; 0 other;
     ttctggtcct tcgaaccgga tcggacggat cctggttcgc gggaggaagg acggttggac        60
     gctacattgc cgtttgtgga cgaggttcgt cgccattgga ctgcggcgtg gcacggttcg       120
     ccatcgctgc tgggaacaat caaagcgcgc caacggtttg gccattcatt cctgggacaa       180
     taggacattg taccctcaac ccggacaacg aacttcgcgc ttggacatct acgcgccaac       240
     gtgttgcgtt tggtaagtgg aaccactacg tatatgtccg ccgaagcggt cagacattcc       300
     cggtactgac acacctccca tccacatcta cgctgtacat tccgctggag cgaaccgctg       360
     cgtgcgtccc attggatcga gcgagccatc tgctacgcgc tgcgcggcga gagtgcgttt       420
     ccggtcacgg tcagccattt tctggaacat ccggtcagcc atttcctgga ccatccgatt       480
     gctgcgttgc tgccggagcc atccgactgc tgcgttgaca cactgttcca gaaaggacac       540
     cttttgccca ggtaaaatat tctaagcaca gtgtatgtca gccgaagcga gtcgctacag       600
     tgaaactaac accatttttc gaccacacaa ctctttacta cgcccgaacc ggctggacac       660
     cggtgattgt acgtgctgtg accacgtgga ggtcgctgac tatctgcacg actccaagcc       720
     gacacgcggc gactccgagg tcgctggaga tctacacgac gatctgcacg actccaagag       780
     gacatctaac ggtggccaca accgtttgct accgttcaga ccacccgaga aggacgacat       840
     caacgtgtct gacacgtgcc aagacggatc gtcacgtgga ctgaagaggc tgcgcaactg       900
     ttcgtttcta ccggtgagtg ctaaagaata gtatattgcc gaagctaaga cgacagaaat       960
     acacaatttt taaatcgagt ttgtatcctc ttcgcttaca ccacgcatcc ctgaggtcat      1020
     cccatccgct gattgattta cgatctgatc tggttcacgt tgttttttgg tcactgctac      1080
     tgtttctcca ggtgagatac actagcaaag tatatggctt gccgaagcca aggcaccgtt      1140
     gatactacat gtcgttttcc acctcttctt cgcacaccca cgcattcaat ttgagctgcc      1200
     cacttgaccg ctaaggacat tttggtttga cgtctcgagt tacctggtgc ttccggttcc      1260
     gattgaactc ccaactgctt tgggtacgat cagttactgc taaaagtaag taatttgcta      1320
     cagcagtata tgttcttgcc gaagccagga cgaaacggaa tactacagca ccacactttt      1380
     tcgctttaca ttgtctgacg tcatggcacc ccggaagtcc ttgttaggac cgacgctgaa      1440
     ggcgttgacc gttaaatacc aagagttaca agcagcgctc aatgacatct tcatatttgc      1500
     tgataaattc aaggcggaaa caaccgcttc ccaggtgagt gtgcgcttgg aaagtctaaa      1560
     caagctgtgg gatgttttgt gcactacctt ggtggaaatc aaatctcaca aagactacag      1620
     ccctgaggat gaccctacct acaaaaagga ccgcgaaacg ttgactgaag gctattaccg      1680
     agtaaaatcc cttctactgg acaagctgaa ggaacgacag gaagttccat gtgaaccgac      1740
     ccacaacgac acgattgttg gggggactga tcacgcccgt ttgcctcaga tcaagcttcc      1800
     tatgttcaag gggaacatcg acgagtggct gagttttcgt gacctgttcc tctcactcat      1860
     ccactggaag tctgacctac cggatgtgga aaagttccac tacctaaaaa attgtcttga      1920
     cgacaaaccc aagaggatca ttagtggact ttcaaccacg tcggtcaact acaagctggc      1980
     atgggatcgt ttgcagaggt actacaacaa ccacaaggta cttaagcagc gactggtgca      2040
     atcgttgttt acccttccaa ccctcgccga ggaatctgcc accgatctgc attccctcgt      2100
     tgacgagttc gagcgtgttc tgaacaccct cgatcaggtg gtctcacccg ttgactacaa      2160
     ggatcttctg ctggttaatt tactcgttac gcgtctggat cctgttacgc gtcgcgcatg      2220
     ggaggaagta tctacggcga aagatttggt tagagattcg ctaggtgatt ttgcggatga      2280
     ttcaagggag gaatctgcta acgacacgac gaaagacacg ttgaaggact tgtgcgattt      2340
     cctaaaccga cgcattcgag ttctggagag tttgccgccg aaaactgtga acagtcgggc      2400
     tgttcaacac caacaacaac agtacgttcc caaatccaag gcaaagaagg ttagctacag      2460
     tacggtgcaa catgctggct actcgtgcgt ggcttgtaag gacaaccact tactctacca      2520
     gtgttctgca ttccaacggt tggcggtgtc ggagagggac gcattactca agacgcattc      2580
     cctctgtcgc aactgcttca gaactggtca ccaagccaaa aactgcacgt ccaagtacag      2640
     ttgcaggaac tgtaagggtc ggcaccatac tttggtatgc tttcaacaac aaccggaaag      2700
     ggacaacgcg gtgacggcac tcgcggttgc agggagcaac aacccttcca actccaagga      2760
     aacccaaggt ccgacaacat cccacgtggc aaacatggca gccacgaacc catccgtatc      2820
     aggcgcagca acccaagctg catcccaagt gctgttggct acagcagtgg tcattgtcga      2880
     ggacgacgat ggcaatcggt accctgctcg cgcactactc gactcggggt cggagagtaa      2940
     cttcatatca gagcgactgg cgcagctgat gaaggtcacg cgagaaaagg tggacatttc      3000
     cgtgctagga atcggtcaat ctggcacaag ggttaagcac aagattcacg caacggtgcg      3060
     gtctcggtta tccaacttcg agcgagacat gaacttcttg gtgctctcca aggttacggt      3120
     caatctgcca acaacaacaa tcgcaacaaa tggatggtcg attccggacg gaattgaatt      3180
     ggcagatcca gcattcttcc agtccaagaa ggtggacatc gtccttggca ttgaatgctt      3240
     tttcgagttc tttgaaaccg gtcgaagaat tcccctggga gacaatctac cagcgctgaa      3300
     cgagtcggtg ttcggctggg tggtatccgg tggtctctcg gttccatgca actccacgca      3360
     ggtgaagtgc aacgtgtcaa cctcagagaa gatggaaact ctgatggcac ggttctggtc      3420
     ggctgaagac gtcggtttgg acgacgcatt ctctcccgct gaaagacgct gcgaagagaa      3480
     cttccaacac acggttcaac ggttatccga cggtcggtat tccgtctcca tgcccaaggt      3540
     cgaaggtgga atctccaggt tgggcgaatc caaggaaatt gcgttgcgac ggttgcacgc      3600
     aaccgagcgc agactggcaa gggacgccaa tttgcggaaa cagtatacag atttcatgga      3660
     cgaatatctg gaactgggtc acatgtccaa ggtcgaagca acaactccaa cccaggtcaa      3720
     ccggtgtttt ctaccgcacc atccggtggt caaggaggcc agtatcacca ccaaatgcag      3780
     agttgttttc gacgcttctt gcaaaacatc ttctggagtc gcgctgaacg atgtgttgct      3840
     ggcagggccg gtaatccaag aagatttgcg ctctatcatt ctgcggagtc ggatcaagcc      3900
     ggttatgctt gtgtctgacg tagagaagat gttccgtcag atcatggtcc acccagagga      3960
     acggccattg caatccattc tgtggcgttt ttctccggac gaggaagttg gcatctacga      4020
     gctgaaaacc gtcacttacg gcacaaagcc tgctccattc ctcgcaacca gaacgctaaa      4080
     acaactagcg acggatgatg gacctcgatt tccgcttgct gcacgggcag tcaaccaaga      4140
     cacctacatg gatgacgtca tcaccggagc tgaggacgtc cagtcagcaa tcgaacttcg      4200
     gaagcagcta gacgagatga tgctacgagg cggtttcaag cttaggaaat gggcatcaaa      4260
     tcgacaggaa gtgctagctg ggattgctga ggaaaaccta gcgattagca tggaggaaat      4320
     caaccttgac acggaccctg gagtgaaaac tcttggtctc acatggatgc cgaaaacgga      4380
     cacgctaaag ttccagttca acattcccga tttgggcaag gttcctgagc tcaccaaacg      4440
     cttcattttg tcaacaattg ccattctttt tgaccctctt ggactgctag gaccggtcat      4500
     cgtaacggcc aagattttca tgcaatctct gtggacgttg ctgaacccga acggagaacg      4560
     tttggattgg gatgaggcgg tacctgaaat ggtgggtgag gtctggagga gatttcattc      4620
     acagctcgct ttgctcaatg aacttcgcat cactcgtgcg tcatctgccc tgaagtgttc      4680
     aagatggaat tgcacttctt ttctgacgca tctgagaagg cctttggaag cggtgcgtat      4740
     ttgaaaagcg aagatccaaa gggcaggata ttcgtgaact tactcacatc caaaaccaag      4800
     gtggcaccgt tgaagagcca agcgatgcca agattggaac ttcgcggtgg cgttttgtct      4860
     gctgaactct acgtgcaaat actgcaatcg ctgaagatca aaattccaac ctttttctgg      4920
     gtcgacgcca tgtgcgtgtt gtactggcta caatcaccac catcaacatg ggtcacattc      4980
     gtcgccaaca gggtggccaa gattcaagct ctcacggaag gctgtgtctg gggacacgtg      5040
     cctggagttg aaaaccccgc agatttcctg tcacgtggag tcatgccagc agatctcatc      5100
     gacttggtac cattctggaa gccaggctgg gtgaaaaaga cgaatgagca acgccaacca      5160
     caaccgaaga tcgtgacgac ggaagaagca gaagaagagc gaagaaacac tgcggcatcg      5220
     gtagctgcag caactacggc tgagttcaac gtttggttca tctctcactt ctcttcgtat      5280
     cccgatctgg tcaggcgtac ggcgtattgg ctacgcttga aggatctact tcgcatgcca      5340
     aaggaaaagc ggttcaaatc ggacttgttg acggttgcgg agctgaaaga agcagagttc      5400
     gcattaataa ggctcgttca gaagcaagct ttcgctgatg aatggaacaa actaaccaag      5460
     gggaaaccag ttgcgaatag ttcaccactg cggtggttca acccgtacat ttccgatgaa      5520
     cagctcattc gagtgggagg acgcttacgt cattcattgg aatccgagga cacgaaacat      5580
     cccatcgtac ttccggctag gcatcaactc gcacgacttc ttttccgaca tttccacgag      5640
     aaattgcttc acgctggtcc acagctggtg ttgggagtcg ttcgattacg cttttggcca      5700
     cttgggggca gaagtgtgat cagagaggtg atccatcact gcaaggagtg tttccggtcg      5760
     aaacccgtgg ctgttcagca gttcatggga gaattgcctt ctgctcgggt taccacctcg      5820
     cgaccgttcg cgcgtacagg tgtggactac tttggaccac tttatgtgcg cccagcccca      5880
     agacgacctg cagttaaggt ttacgtcgca ctttttgtat gcctctgcac caaggctgtc      5940
     catttagagt tggtaacaga cttatccaca gagcgtttca tccaggcact tcgacgattc      6000
     gtagccaggc ggggaatctg tgacgacatc tattccgata acggaacgaa cttcgttggt      6060
     gctcgtaata aaatggctga actcctgttg ctgctcaaag accgtaaaca tcgcgacatc      6120
     gtctccaagg actgttcaaa ccaaggaatc aaatggcact ttaatccacc cagcgcacca      6180
     cacttcggag gcctctggga ggccgcggtt cgatctacaa agaagctatt attaaaaaca      6240
     atcggcgaaa cacctgttac cccagaggat ctcaacacgt tgctggtcca ggtggaaggc      6300
     tgcctcaact ctaggccgct aactccgatg tccgatgacc ctaatgacct ggaaccatta      6360
     acaccggcac attttctcgt gcagtcatcg ctgcaaacag ttcccgatgc tgatttatca      6420
     gcaatcccga tgaacaggct cgacaaattc cagacggtgc agcgcatgct gcaagatttc      6480
     tggactcgat ggcggaggga gtatttgtgc cagctacagg gacgggtcaa gcgctggaag      6540
     ccaccaatac agatcgaggc cggtaagctt gtggtcatca aagacgagaa ctcaccacca      6600
     atgcgatgga agatgggaag aattttcgag gtacacccag gcgaagacgg agtggttagg      6660
     gtagtaacgc tgaaaaccgc cgacggctat ctcaaacgac cggtggagaa actgtgcata      6720
     ctgccacttc cggagtacag cgacgccatg gaatcaacgg atgcagatct tcaaacccaa      6780
     tcctaacttc ctatccctat tcccacatcc ccgaagaggt tttttgtatc ttttcagaaa      6840
     ctggtcattt ctgggtgggt gaga                                             6864
//
ID   BEL-1_CQ-LTR repbase;    DNA;    INV; 620 BP.
XX
AC   AAWU01033868;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_CQ_;
KW   BEL-1_CQ-I; BEL-1_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-620
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 156-156 (2011).
XX
DR   Genome; AAWU01033868; Positions   30010   30629.
XX
SQ   Sequence 620 BP; 151 A; 157 C; 152 G; 160 T; 0 other;
     tgttggagtg gtcacgatta acaaccctgc atctactgtc gggtcaccac tgtcgggtca        60
     actgtgacca tccaacgcga gtgaccactc ttatcacggc tgcacgcgac ctacagcagc       120
     tgatcgcggt gatcctctcg cgagatggac gatcgtgatc gctgatagga ccaacaccaa       180
     cagcaggatg cacttttgcg gggtcgatga ccgccgggcc gggttgatga cctgacctgc       240
     ctcaacgaac gacgggagca gctgacctgc tgcgattttt agtttttaag ttttacaacc       300
     tctcgaaccg gcagatcgaa acggtcgatt ctgcgcctat caggcaattt aaatgtgtta       360
     ggcttaatat taataaatgt agtccttttt tttagttcgt gtatttaaag taaaaattgt       420
     gtttaaatta aagaattgtg ttttactgtg atttcgtgtt gttttaattg tgaaacgcgt       480
     gaattccgga agccacccta cgcacggact acccacggcc aacgaaccag gaccggacca       540
     gccagcccaa tccgatccgg tcgatgctgg gagccaccag agctgtcgaa ggctaaggtt       600
     tttattccgg ctccccaaca                                                   620
//
ID   BEL-1_DAn-I repbase;    DNA;    INV; 5334 BP.
XX
AC   AAPP01018841;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DAn_;
KW   BEL-1_DAn-LTR; BEL-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5334
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018841; Positions   73307   78640.
XX
CC   Positions [4370-4948] - Integrase core
CC   'TCAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..1675
FT                 /product="BEL-1_DAn-I_1p"
FT                 /translation="MEQLKRLKGVRGRLKSSLTKLLHTAENSSASIGVDAM
FT                 EVLLVRLDKVWNDFELAGDDLSVLDDVEGWVYPADDYDEYEAKYIKARALL
FT                 FSLKRSQEPTTPTRHAEGDSIANNDAISRLVQQQQEFFERLGATSTPTQAD
FT                 AAAPVRETELPKIHIKPFGGIYKEWPAFKALYISTVHSKQHLGKIQKYHYL
FT                 KSFLVDEAASLVRHLPISETAYDNAWERLNERYDRPRQIIHNLLDTFMELP
FT                 STNNGEVSILRSISDGANEVIHALDSIGHMDRDCWVIHLLLNKIDPESRRK
FT                 WVDASRASNSPKVEEFFKFLDARCEEFELCQSDPVPRQGGNNKKTSRAMVT
FT                 AALTKCVNCNADGHQLSKCPQFISLSIDQRRSFVKHKSLCFNCLKPGHRSS
FT                 NCSSKYNCQQCGSRHHTLIHTHAMQTNEGQITSTSSSDHKDPDTTSVTASH
FT                 MSQALLTPTLLSHGQVGRTCTLPTALVHIRNSQGTYTNCRVLLDTGSELSY
FT                 VSERCIKALGLSRVPRRILISGISSIKADTTRGFSTLTIKS"
FT   CDS           2807..5320
FT                 /product="BEL-1_DAn-I_2p"
FT                 /translation="MSCAQLELGKWISNSNRVVDPETTITNNTSYSPLETT
FT                 NKVLGIHWQPHTDTLAYKVSLPSEGKITKRQVLSDVSRIFDPLGLLAPVVI
FT                 QFKILFQELWVLNLDWDSPLPLSLEDWYLKCKNDINTLNELEVPRYIGNST
FT                 DTIELHAFSDASIKAYAAAVYSRVTLPDGNIKVTLIAAKTRVAPLKTQSLP
FT                 RLELCGALLLSRLINSVKAALKNYNVTVYAWCDSTIVLAWLSHIPAKLKTF
FT                 VANRTAEILSIIPRDHWQHVKSDDNPADCASRGMLAADLVNHNLWWKGPHW
FT                 LYSTEAEWVKTPSTPHSSFISDEQVQAEVKGSAFTTMRTYNTETSLLGQLI
FT                 DRVSSWPKQLRILAYVLKFIRRNRRKSNTATLTFEEIHDARILYLRHAQDE
FT                 FQADYKRLLNQQDLGNKSKLRTLSPQIDKHGLLRVGGRLGNSELPADVQHP
FT                 IIMPKSHRITKLILEHEHRIHLHPGVSALFVIARQRYWVFGARNLIRKITH
FT                 DCLKCFRQRQHTSHQFMSDLPSVRVRQAFPFANTGCDYAKPITLKVHKGRN
FT                 PRKEKGYICLFVCLATSALHLELATDLTTDRFLAALRRFISRRGKCSQMYS
FT                 DNGRNFVGAKRVLNEMQTLLKSDEHNNTVLKALADKGINWNFIPPHAPHWG
FT                 GKWESAVRSVKLHLHRVIGKNVLTFEKMHTLLAQIEAVVNSRPLFSTSDTE
FT                 VNYLSPAHFLIGRPNTTVPEGDLSNVPINRLDYWQQTQAMLQGFWKQWRME
FT                 YLTSLQHRPKWMNKSVNMAKDDIVLLKDSHTPPAAWPLGRVIETYPGKDGM
FT                 VRAVRLRTPTGETTRPIVKLALLPNSETVFQGRPGC"
XX
SQ   Sequence 5334 BP; 1550 A; 1391 C; 1142 G; 1251 T; 0 other;
     tcataaggaa attggtcctt cagagccaga ttcgttattg ttagtaaagt aaagcaccat        60
     tgcgatggaa caactcaaac ggctaaaggg agtgaggggc cgtctcaaat ccagcctcac       120
     caaactgcta cacacagcag aaaactcttc cgcatcaatc ggcgttgacg ccatggaggt       180
     actgctagtc aggctcgaca aggtttggaa tgatttcgaa cttgccggag atgatctgag       240
     cgtgcttgac gacgtcgagg gctgggttta tcctgcggat gactacgacg agtatgaggc       300
     gaagtacata aaagcacgtg cgcttctgtt ttccctcaag cgctcacagg agccgacaac       360
     accaacaaga catgcagaag gagattcaat agctaacaac gacgctattt ctcgcttagt       420
     gcagcaacaa caagagtttt tcgaacgcct aggagcaact tcaacaccaa cccaggctga       480
     cgccgcggcg ccagtaaggg agacagaatt accgaaaata cacataaaac cgtttggtgg       540
     catttacaag gagtggccag ccttcaaagc actgtacata agcactgtac atagcaagca       600
     acatctgggt aagatacaaa agtaccacta tctaaaatcg ttcctcgtgg acgaggctgc       660
     aagtttggta cgccatttgc cgatttctga gacggcatat gacaacgctt gggagcgcct       720
     caacgagaga tacgatcgac cacggcaaat tattcacaac ctgttggaca cctttatgga       780
     gctaccatcg actaacaatg gagaggtatc catattgcgt agcatatcag atggtgcaaa       840
     tgaggtcatc catgcattgg actcaattgg ccatatggac cgagactgct gggttatcca       900
     tttattgcta aacaaaatcg atccagagtc acgccgcaaa tgggtagatg caagccgtgc       960
     ttcaaattca ccaaaagtcg aagagttctt caagttcctg gacgcacgat gtgaagaatt      1020
     tgagctgtgt caaagcgatc ctgtaccgag acagggtggt aacaataaga agacaagcag      1080
     agccatggta actgctgcgc tgacaaaatg cgtgaattgt aatgcggatg ggcatcaact      1140
     gtctaagtgt cctcaattca ttagtttgtc tatcgaccaa cgccgttctt ttgtaaagca      1200
     caaatctctc tgctttaact gtctcaaacc aggtcacagg tcatcaaact gtagctcaaa      1260
     gtacaactgt cagcagtgtg gcagcagaca ccacacactc atacacacgc atgctatgca      1320
     gaccaacgag ggtcaaatca catccacgtc ttcaagcgat cacaaggatc cagacacgac      1380
     atcggtgact gcgagtcaca tgtcacaggc actactcacg ccaaccctat tgtcacatgg      1440
     gcaagtagga cgaacatgta ctttgccaac tgcattggta cacatccgca actctcaagg      1500
     cacatacaca aactgccggg tgctactcga cacgggctcg gagttatcat atgtatcgga      1560
     acgctgtatt aaggcactgg gtcttagtcg ggttcctcgc cggattctca tttccggcat      1620
     ttcttcaatc aaggccgata ccacgagggg attcagcaca ctcacgatca agtcttgagt      1680
     ttctgatcac tcgctacaag taaaagctca tattctagga aaaatcacat ctacgctggc      1740
     aagagaaaac atcgatgcat ctgcgcttga gatcttcaat gggattccgc ttgcagacac      1800
     tgaattcaac tcggcatcgc ctatagacgt cctactaggc accgattctg tatgggctat      1860
     tttaaccggc aacaggaagc tgggtgcgca aggcaacata atagctattt caacaatctt      1920
     tggattggtt atcacatcga ttgcgtatca aaatccatca atcaccacgt catttttgtc      1980
     tacagtcgat atccatgcta ctctacaaag gttttgggaa atcgaggact cccaaatcac      2040
     cactcaccat gatcctgaaa atgttaaggt tgaagagcat tttcaaacca cgcactcacg      2100
     cgactccaag ggaagataca ccgtagagct tccattcaag gatgcagatc cacaattcac      2160
     tgacactctg cagggagcaa cccaacgctt tgcgtctgtg gagcgccgtc tacatagaga      2220
     cgcagatttg cactcacggt atgtaaaatt catgcaagag tatatttctc taggccacat      2280
     gcgccaaatg aaccctgacg aaattctcac caacgatgga agggtattct acatgccaca      2340
     tcaccctgta cttggaaaga aactacgagt agtttttgac ggttcattcc aagatccttc      2400
     tggtcaatct ttaaacgaca ccctgaacgt tgggccgagc attcaacgaa acctgttcga      2460
     tgtatgcgta cgctttcgct tacataaata cgttttttct gcggacatta ttaagatgtt      2520
     caggcaaatt tggatcaaca agcatcaccg caactaacaa cgtatcgttt ggagagaaca      2580
     tccttcagct ccacttctac attaccaact ctgcactgta acctatggca ctgcgtgtgc      2640
     accatttctg gctgtacggg ttcttgagca actggccaga gactaccaac atttgtatcc      2700
     aactgctgcg cgcattcttc ttgaagattt ctacgttgac gacgttttaa caggagctga      2760
     caccgaggaa aagcttctac aatacaaaca agaactaatt caactaatgt catgtgctca      2820
     actcgaactt ggaaaatgga tttccaacag caaccgcgtt gtcgatcctg agacaacaat      2880
     cacaaacaac acatcataca gtccactcga aactacgaac aaggttttgg gaattcattg      2940
     gcaaccgcac acggacacat tggcatacaa ggtatctttg cccagcgagg gaaagattac      3000
     aaaacggcaa gttttatcag acgtgtctcg cattttcgac ccacttggat tgctggctcc      3060
     agtggttatt caattcaaaa tcctgttcca agaactttgg gttctcaact tagactggga      3120
     cagcccgcta ccgcttagcc tggaagattg gtatctcaaa tgcaagaacg atatcaacac      3180
     gctcaatgaa cttgaggttc cacgctacat tggcaactct actgacacaa ttgaattgca      3240
     cgccttctct gacgcatcta taaaagccta cgctgctgcc gtttatagta gagtcactct      3300
     ccctgatggt aacataaagg ttactcttat tgctgcaaag actcgtgttg caccgctcaa      3360
     aacacaatca cttccacgcc tggaattgtg cggcgcactg ctactaagtc gactcatcaa      3420
     ctcagtcaaa gctgcactga aaaactacaa cgtcactgtt tacgcctggt gcgactctac      3480
     cattgttttg gcttggctct cgcacatacc tgccaaacta aagactttcg tcgcaaaccg      3540
     cactgccgaa atcctcagca tcattccacg agatcactgg caacatgtca aatcagatga      3600
     caaccctgct gactgcgctt caaggggcat gctagctgct gacttagtaa accacaactt      3660
     atggtggaag ggcccacact ggctatactc aaccgaagct gaatgggtaa aaacacctag      3720
     cactcctcat tctagtttca tttcagatga acaagtccag gctgaagtaa aaggttccgc      3780
     tttcacgaca atgagaacat acaacactga aacctcacta ttgggccaac tgatcgaccg      3840
     tgtctcctcg tggccaaagc aacttcgtat tctcgcctat gttctcaagt tcatccgacg      3900
     caatcgcaga aaatccaaca ccgctacgct gacatttgag gagatccatg acgcacggat      3960
     cctgtacctg cgccatgccc aagacgaatt ccaagctgac tacaagcgac tcctgaacca      4020
     gcaagatttg ggaaacaaat caaaattgcg caccctctca ccgcaaatcg acaaacatgg      4080
     actcctgcgg gtgggtggcc gtttaggtaa ctcagaactg ccagcggatg tgcagcatcc      4140
     aataattatg cccaaatctc atcgcataac gaagctcatt ctggaacatg agcaccggat      4200
     tcacttacat cctggagtat cggcgttatt cgtgatcgca cgccaacgct actgggtgtt      4260
     tggcgcacgc aacctcattc gaaagatcac gcatgactgt ctaaaatgct ttagacaacg      4320
     gcaacacaca tctcaccaat tcatgtcaga tctgccgtct gtccgggttc ggcaggcatt      4380
     tccgtttgca aacactggct gcgactacgc caagccaatc accctcaagg tccacaaggg      4440
     acgaaatcca cgcaaggaaa agggttacat ctgcctattt gtatgcctag ccacttctgc      4500
     cttgcatttg gaattggcta cagatcttac aaccgacaga ttcttggcgg cactcagacg      4560
     attcatctct cgccgcggaa aatgctcgca aatgtatagc gacaacggga gaaacttcgt      4620
     cggggcaaaa agggtattaa acgaaatgca aactcttctg aagtcagacg aacacaacaa      4680
     cactgtactg aaggccctgg cagacaaagg aatcaactgg aatttcattc ccccccatgc      4740
     accacactgg ggtggcaaat gggaatcagc tgtgcgctct gtcaaactgc atcttcatag      4800
     agtcattggc aagaatgtcc tcacctttga gaaaatgcac acacttctcg cccaaataga      4860
     agctgtggtc aactcacgtc cactattctc aacttcggac actgaggtca actatctgtc      4920
     gccagcacac ttcctcattg gtcgtcccaa cacgacagta ccagaaggcg atctatcaaa      4980
     tgtaccaatc aaccgtttgg attattggca acagactcaa gctatgctgc aaggcttctg      5040
     gaaacaatgg cgcatggaat atcttacatc actccagcat cggccaaagt ggatgaacaa      5100
     atcggtcaac atggccaaag atgacatcgt gctccttaag gattctcaca ccccgccagc      5160
     agcatggcct ctcggaagag tcatcgaaac gtatccaggg aaggatggaa tggtccgcgc      5220
     tgtacgactt aggactccaa ctggagaaac cacccgtcca attgtcaagc tcgccctatt      5280
     accaaattct gaaacagtgt ttcaggggag gccgggatgt tgatgaacgg tcac            5334
//
ID   BEL-1_DAn-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   AAPP01018841;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DAn_;
KW   BEL-1_DAn-LTR; BEL-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-194
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018841; Positions   73113   73306.
XX
SQ   Sequence 194 BP; 69 A; 27 C; 42 G; 56 T; 0 other;
     tgtaaaacta aaaactgcat taattaacaa ttcgatttgg aaactgggca cacaataagt        60
     ttatgtagag aagaagaagg actagaagcg tcgattgcaa gttcggcgtg tgagtttatg       120
     ctttgctttg ttagacagat ggcgaaatca agcgattgag ccagctctta tatttcaata       180
     aataaagtta atca                                                         194
//
ID   BEL-1_DAzt-I repbase;    DNA;    INV; 5591 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DAzt-LTR;
KW   BEL-1_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5591
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 767-767 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..5588
FT                 /product="BEL-1_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MASNSTPSPNALNSPVSLNADLSYYKRKVQAMLSAAR
FT                 RIENAVGEEKISELKEEELNVRLKSVLDLVVSFNEHHDALERIDLEEIGSP
FT                 LRVEFDDCVVMLETSIKHELNKRQPEMLPCSTMRTDHGSEAPATVIMQHRH
FT                 RLPELKLPEFSGGYSQYPAFWSMFSSIIDKEPDLTNVEKLQHLRSCLKGPA
FT                 LDTISSLEFCHASYPIALDLLNRRFNNKRLIFQAHVNDILGVQRVEESSVS
FT                 QLRFLTDTAIGNLRALKSIGTKEQIADCIIIHSLLQRVDSATQAKWEDTPS
FT                 LDSIPTAEQFTEFLEQRCQKLENQEHTRAMYAPGIQVGKIKKTFNNSKSSF
FT                 VVTESVALDCVFCNTTGHSIYTCTLFLNLSPSLRLLEVKKLSLCINCLKPG
FT                 HQIRTCRSSTCRHCGVRHHTLLHFNDRRSQSESAVSSSPHPEAHSQTSATA
FT                 LIAHNSCNDVVLLATAVVLLKDRSGSLVPCRALLDSGSQMHLITSSLAQQL
FT                 RLKRTMSSATVSGLGDSSFASEGYTVCLNLQSQASDYSTSFVALVAPTITE
FT                 QQPSFSVDVSHWKIPQNIPLADPQFFRPQRIDLLIGASLFFDLMCVGQIKL
FT                 ATGLPSLQKTRLGWVVSGGGQDPRKTGLLGSRCSSDTGHESLDQVEMLLRR
FT                 FWEVESSTEVSVTVKQEDIDCEEHFKANFSRSSSGEFAVKLPIKGSLDILG
FT                 DSYMQAYRRFLNLERKLERRSQLKSQYSSFIREYQELNHMSLVESELSSRC
FT                 RYFLPHHCVLKEDSTTTKLRVVFDGSATTSTGYSLNEVLMAGPTIQPKLLH
FT                 TLLRFRTFPIALTGDICKMYRCVRVSEPDNYLQCILWRDSPRENVKAFKLD
FT                 TVTYGTKPASYLAIRAMLQLAEEEKSSFPIGSEVLASNFYVDDLMTGGGSV
FT                 EEVREKLKQTSQLLARGNFPIRKWCSNVPAVLEGVPDEDKETMLSFDDGTD
FT                 FTKALGLVWEPASDEFLFSVVPAQLSSRPTKRSMLSTIARFYDPLGLIGPV
FT                 IAKAKIFLQLVWKERLQWDESLPESLASAWTAFCENLSAPQRFRFPRLALC
FT                 PRSKMEVHGFCDASLDAYGACIYIVSRTKNGAYVQLFCAKSRVAPVKVLTV
FT                 PKLELCGADLLSQLISEIHRLKLFTGSFYCWSDSTTALSWIRNDPSSFNVF
FT                 VANRVSAIQERTAQMEWRYVPTAQNPADILSRGALPSELLESHLWSNGPLF
FT                 LRNEKPMWPSSSTQDLPTLELRKRVLIAVCPFVDLSDGRKFRNSFGKLQRT
FT                 FAYVFKFVRRKRSSGLTVDDIVGGTRLLIRSIQRVHLWTDYKALRNGKQVQ
FT                 PSSSISSLAPFLDEHGLLRVGGRLANSSLDFNARHPVILPRRHPVTSAVIV
FT                 HFHERNLHAGPRSLIALIRHEYWPIGGRKTVANVVNRCTRCFKAKPRLLQH
FT                 IMADLPKERVNATCAFAVTGVDFCGPFFYKSEVRTRPPIKCYICVFICFAT
FT                 KAVHLELVQDLSTPAFISALKRFICTRGQPREIWSDNATNFVGAKNELAEL
FT                 KKLFLSENHQKAVQEFCVADHIDWRFIPPRSPHFGGLWEAAVKTAKHHFYR
FT                 SASSFVLCFDDLRTLVCHITAIVNSRPLLPISEHPDDLDVLTPAHFLSTAP
FT                 ILMFPEPDVTRLNVNRLDRWQQVNFLQQTFWSRWREEYLTLLQERAKWKTG
FT                 QPSLSVGDVVLVKNESLPPLKWPLGRVTKLIVGKDGVPRVAELKTATGIVT
FT                 RAVAKLCMLPKKDVEDPYSSTGG"
XX
SQ   Sequence 5591 BP; 1350 A; 1350 C; 1394 G; 1497 T; 0 other;
     ttttggtgac cccacacgtg ataaacaata acataataac ataaacttat aaacaaaaag        60
     ccaattatat cgttccataa tttgcataaa atacagctgt tcggttcggc ggttgtgcac       120
     aaacagtaac ggttctcgcg tcatccgctt tacctactgc ttgctgttat ttcgtgtcgt       180
     tttcggtgca ctctgttcgt ttgacattgt tgttggtttt ggtttggcaa attgcgaact       240
     ctcgctgctg gtctgtgccc gtgtgttcga gcgctgcgat cgatttgaag ttcctttaaa       300
     actgttcgag gttattaacc ggctgttgac ctctgtggtt gccatatcaa atacaagaaa       360
     tggcttctaa tagtacaccc tcccctaacg ctctcaattc ccccgtgtcc ctcaatgcag       420
     acctttcgta ctacaagcgt aaggttcaag ctatgctaag tgcagcacgg cgaattgaaa       480
     atgccgtcgg cgaagagaag atttctgagc tgaaggaaga ggaattgaac gtccgtttaa       540
     aatctgtgct ggatcttgtc gtgtcgttca atgagcatca tgatgctttg gaaaggatcg       600
     atcttgagga gatcggtagt cccttaagag tagagtttga cgactgcgtg gttatgctgg       660
     agaccagcat taagcatgag ttgaacaaac ggcagccaga aatgctccct tgctcaacaa       720
     tgcggacgga ccatggttca gaagccccgg ctacggttat aatgcagcat cgacatcgcc       780
     taccagagtt aaagcttcca gaattcagtg ggggctactc acaatacccc gccttttgga       840
     gcatgttttc ctcgataatc gacaaggagc ctgacttgac gaatgtggaa aaattgcagc       900
     acctacgatc ctgcctaaaa gggccggctc tggacacgat ctcttcgttg gagttttgcc       960
     acgccagcta tcccatcgct ctagatttgc tgaacagacg gtttaataat aaacggttaa      1020
     ttttccaggc acacgtcaat gacattctgg gtgtgcagcg cgttgaggag tcgtctgtgt      1080
     cccaactccg gttcttgaca gacaccgcaa ttggcaatct gcgagcttta aaaagtattg      1140
     ggacaaagga acagattgct gactgtatta taatacacag cctgctgcag agggtagaca      1200
     gtgccacaca agccaagtgg gaggacactc cgtcactgga tagtataccc acagccgagc      1260
     aattcaccga gtttctggag caaagatgtc agaagttgga gaatcaggag cacactaggg      1320
     caatgtatgc gcccggcatt caggtgggaa agattaaaaa aacatttaac aacagtaaga      1380
     gttctttcgt agtgactgaa tcggttgctc ttgactgtgt attttgcaat actactggcc      1440
     atagcattta tacctgcacc ctgtttttaa atctctcgcc gtcactgcgc ctactagagg      1500
     tgaaaaaact aagtctttgc attaattgcc tgaagcccgg ccatcaaatt cgcacctgca      1560
     ggtcctcaac ttgtcgccac tgtggagtca gacatcacac attattgcat ttcaatgaca      1620
     gacgctcgca atcggagtct gctgtctcgt cgtcaccgca ccctgaagct cattcacaga      1680
     cttcagccac cgctctgata gctcacaatt cttgcaatga tgtcgtactt ttagccactg      1740
     cagtggtttt gttgaaggat cgctctggat ctctcgtgcc atgtcgggca ctcttggatt      1800
     ccgggtcaca aatgcacctc ataacatcta gtctcgctca gcaacttaga ctaaaaagaa      1860
     ccatgtcatc ggccacagta tcgggacttg gggactctag tttcgcatcg gaaggctaca      1920
     cagtgtgcct caatttgcag tcgcaagcct ctgattacag taccagtttc gtcgcattgg      1980
     tagcacccac aatcaccgag cagcagccta gcttttcagt agacgtttcc cattggaaaa      2040
     ttccgcagaa catcccactg gcggatcccc agttcttcag gccgcagcgt attgacctgc      2100
     tcattggggc tagtctcttc tttgatctta tgtgcgttgg ccaaatcaaa ttggcaacgg      2160
     gcttgccatc gcttcaaaag actcgccttg gatgggtggt ttcaggaggt ggccaggatc      2220
     ctcgtaaaac aggcttgttg gggtctcggt gctcatccga cacaggtcat gagtcgctcg      2280
     atcaagtgga aatgctgctg aggcggtttt gggaggtaga aagttctact gaagtttcgg      2340
     tgacggtgaa gcaggaggat atcgattgtg aggagcactt caaagctaat ttctcgcgct      2400
     cgtcatctgg agagttcgct gtgaagttgc ccatcaaagg aagtttggat attttgggtg      2460
     actcgtacat gcaagcatat cgccggttcc tcaacttgga gcggaaactt gagcgtcggt      2520
     cacagctaaa atctcagtac tcctctttca tccgggagta ccaagaactt aatcacatgt      2580
     cgttggtaga atcagaactg tccagtcgct gtcgatattt tttgccgcac cattgcgtgc      2640
     ttaaggaaga cagcacaact accaaactgc gggttgtgtt cgatggatct gcaacaactt      2700
     caacggggta ttctctaaat gaggttctaa tggctgggcc tactatacaa ccaaagctgc      2760
     tacatacatt acttcggttc cgtacgttcc caattgcgtt gactggagac atctgcaaga      2820
     tgtacaggtg tgtccgggta tctgagccgg ataattacct tcagtgcatc ttatggagag      2880
     attcacctcg ggaaaatgta aaggcgttta aactcgacac agtaacgtat gggaccaagc      2940
     cagcttccta tcttgcgatt cgtgcgatgc tccaattggc cgaagaagaa aaatcgtcat      3000
     tccctattgg atcggaagtg ttggcgtcca acttttatgt cgacgatttg atgactggtg      3060
     gaggatctgt agaggaagtg cgtgagaagt tgaagcaaac atcccagttg ctggctcggg      3120
     gaaactttcc aattcggaaa tggtgctcca acgttcctgc cgtgcttgaa ggagttcctg      3180
     acgaagataa agaaacgatg ctgagttttg acgatggcac cgattttaca aaagcccttg      3240
     gactggtttg ggagcctgca tccgatgaat ttcttttttc cgtagtaccc gcacagctgt      3300
     cttcgaggcc gacaaagcgc tctatgttgt caactatcgc tcgcttttat gatccccttg      3360
     gattgattgg gcctgtcatt gcaaaggcaa agatcttcct tcagttggtg tggaaggagc      3420
     ggctccaatg ggatgagagt ctacctgagt ctcttgcgtc agcgtggacc gctttctgcg      3480
     agaatttgtc tgctcctcag cgatttagat ttcctcgcct cgcattgtgt cccaggtcaa      3540
     agatggaggt tcatgggttt tgtgatgcca gcctagacgc gtatggcgca tgcatctata      3600
     tcgtctcaag gaccaaaaat ggcgcatacg tgcaactttt ctgcgcgaag tctcgtgtcg      3660
     cccctgtcaa ggtattgacg gtgcccaagt tggagttatg tggcgctgac ctactttctc      3720
     aattgatcag tgagatccat cgacttaaat tatttactgg gagcttctat tgctggtctg      3780
     attccacaac tgccttgtct tggattcgca atgacccatc gagttttaac gtcttcgttg      3840
     caaatcgggt ttcggccatt caggagcgga ctgctcagat ggaatggcgt tacgttccaa      3900
     ccgctcagaa ccctgcggat atcttgtcca gaggcgctct gccatctgaa ctcttggagt      3960
     cgcatctttg gtccaacggg ccactatttc ttcgaaatga aaaaccgatg tggccatcgt      4020
     catctacaca agacctgccg acattggagc ttcgcaagag agtcctcatt gcagtttgcc      4080
     cattcgtaga cctctctgat gggcggaaat ttagaaattc cttcggaaag cttcagcgca      4140
     cgtttgcgta cgtcttcaaa tttgtgaggc gaaaaaggtc atcgggacta acagtggatg      4200
     acatcgttgg tggcacacgg ttgctcattc gttcaataca gagagtgcac ttatggactg      4260
     actacaaggc tttgcggaat ggaaagcagg tgcagccgtc gagctctatt tcgtcgctcg      4320
     caccatttct ggatgagcat ggactattac gcgtcggtgg acgtttagcg aactcatcac      4380
     ttgatttcaa cgcgcggcat ccagttattc taccaaggcg tcatcccgtc acgtctgctg      4440
     taattgtgca ttttcatgag cggaacttgc acgctggacc acgttcatta attgcactaa      4500
     ttcgccatga gtattggcca attggagggc gcaagactgt ggcaaatgtc gtaaatcgct      4560
     gcacaagatg ctttaaggcc aaaccgcgtt tacttcagca tatcatggct gacctgccaa      4620
     aggagcgcgt gaatgcaact tgcgcctttg ctgttacggg cgtggatttt tgtggtccat      4680
     tcttttacaa gagtgaggtg cggaccagac cacccatcaa atgctacatt tgcgttttta      4740
     tttgttttgc caccaaggcc gtacacttgg agcttgtgca ggatttgtcg acgccagcgt      4800
     tcattagcgc gctcaagcgt ttcatttgta ctcgtggtca gccaagggag atttggtctg      4860
     ataacgcaac gaacttcgtt ggagccaaga acgagttggc ggagctaaag aagctgttcc      4920
     tctccgaaaa tcaccagaag gcagttcagg agttctgcgt cgcagatcac atcgactggc      4980
     gcttcattcc ccctcggtcg ccccactttg gcgggctctg ggaggcagcg gtgaagacag      5040
     ccaagcatca cttctaccgt tccgcctcca gtttcgtact ttgcttcgat gacctgagaa      5100
     ccctcgtgtg tcatataact gccattgtga actcaagacc tttgcttccc atttcagagc      5160
     atcccgacga tttggacgta ctaacacctg cgcatttttt gagtacggcg ccgatcctta      5220
     tgttcccaga gccagatgta acaaggctca acgttaatcg tctcgatcgc tggcagcagg      5280
     tcaactttct gcagcagaca ttttggtccc gctggcgaga ggagtacctc actcttcttc      5340
     aggagagagc taagtggaaa actgggcagc ctagtctcag cgtcggcgac gtagtgctcg      5400
     taaagaacga gagcctgcct cccctcaagt ggccattggg aagggtaacg aaactaattg      5460
     tcgggaagga tggtgttccc agggtagctg agctcaaaac ggctactggg attgtcacaa      5520
     gggccgtcgc gaagctatgt atgctgccaa agaaggatgt cgaagacccg tactcttcaa      5580
     cggggggagt a                                                           5591
//
ID   BEL-1_DAzt-LTR repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-363
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 747-747 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 363 BP; 95 A; 93 C; 72 G; 103 T; 0 other;
     tgttcggctt agcgccggcc cacggcagca taaagagcgc atcgctctct tagtcgtgtt        60
     gttgctcact gtcgccctgc acgctctatc acaacattgc cctttcttcg tcgttcgtcg       120
     tccaacaaga gctgcgtggg aggcacatct tcggagcagc aggcacttct gagttgatcg       180
     tcttagctag cgtttgttag tatcgtcaca tagcaccatt tcgtttcgtt ggcactgcga       240
     ccagtttctt atgtacatta ccaaacaata aaatataata gaaaacattc aaatcaaacc       300
     aaacatttgt ttctaataaa ttcttgtaaa aatacgctgc cgaaaaagct cggtagctca       360
     aca                                                                     363
//
ID   BEL-1_DBi-I repbase;    DNA;    INV; 4670 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DBi_;
KW   BEL-1_DBi-LTR; BEL-1_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4670
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 811-811 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3731-4300] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..2497
FT                 /product="BEL-1_DBi-I_1p"
FT                 /translation="MDQLKLLKAARSRAKASITRLLTASQDPRAGSKWELD
FT                 EIHVSLDRLNNVWKEFESISDQMALFDEEEGYVDPAIDNERYEDKYLQAST
FT                 LFRNLIRTCEEAQENGREGNFRQSGNPDEAASMASGVGNENLVRFLEQQQQ
FT                 LNERLAEQQATLLRANSAATVMHNELPKIHIKLFTGDYKEWPAFKNIYEST
FT                 IHSKQHLTAIQKFHYLKTYITGEAADLIRHMPITDAAYEAAWTCLIDRYNR
FT                 PRHIVNTLLETFVNLPSTARADVTVLRKVTDGATEIVRGLDAAGQTQRDCW
FT                 VIHFILGKIDAETRRKWIEGSRDLESPSVDDLLKFLDRRCEEFELSKSESD
FT                 LDSKVGPQHGKAKRSAHALVSMEATSCVKCNSKEHKIYACSQFAELSVEQR
FT                 RTFVKAKSMCFNCLKPGHVSRKCESKFTCKFCHNRHHSLLHAEVIGSQAAV
FT                 STTHPRDERHIPSAPEDATVTISHIARAQVAATAEALCNGSTTATQPQGLR
FT                 KSALPTALVFVKNAKGSHTTCRVLLDSGSELSYISERCVQALGLARSPSRI
FT                 LVSGISSIKAETTRGCSTLDLQSRISDHTMKVRAHILSKITSTLARHDIGS
FT                 STLKAFAGFELADSDYQSLAPVDILLGSDYVWTVFTGQKMFDNEGNIIAIS
FT                 TIFGWVITSIVTTGCSSTTTMHTAIDIDASLRRFWELEDVTISGSKGPGSV
FT                 SPRPSTRVSYLCKDPERAVSCGRRTDGSTYRGGAHSQSKRVDSIDEMCGME
FT                 LGKWVSIHHVSPTKLSRPPTYKEKGPILQQRFWAFIGIQKRICYPQGLPHN
FT                 KSGQHQTPSAVRCGTHL"
FT   CDS           2981..4459
FT                 /product="BEL-1_DBi-I_2p"
FT                 /translation="MFASDLLHFDLWWMGPSWLQDPEMLAVKLSCKKFCSS
FT                 LSENHVKEEVKTTALTTQEACSLSPIEALAQRISSWTKLVRVVAYALRFIQ
FT                 KTKAIKSLTLTNGKMLTFEEIQAARILCLKEAQRCFMEDRKLLTENKPLHS
FT                 RSQLVKLSPIICKDGLLRVGGRLDNSQLPAEAKHPILLPKSNRITKMILEY
FT                 EHISNLHPGVSALFVIARQRYWIFGARNLIRNLVHNCIKCFRQRKLTEHQF
FT                 MADLPGIRITEALPFQHSGCDYAGPFILKERGNPETKGYICLFVCLVTSAI
FT                 HLELATDLSTDTFLACLRRFMSLRGKCSQIFSDNGTNFVGAKRTLDEMQQL
FT                 LSSQEHQRNVTQSLANDGIKWSFIPPHSPHWGGKWESSVRSVKLHLRRVVG
FT                 KTVLTFEQMQTLIAQISAVVNSRPLCYTPDTDLTYLSPAHFLIGRPFTTVP
FT                 EGVPDSFTDQSPGLLAALASNVPRVLETLAPRVFNIPAATSKVEQQGT"
XX
SQ   Sequence 4670 BP; 1303 A; 1180 C; 1104 G; 1082 T; 1 other;
     tatctttggt ccttttcgcc agatttagtt actgattaac atggatcagt tgaaactgtt        60
     gaaggcagca agaagccgtg cgaaggcaag cattacgcgt ttgctaacgg cgtcgcaaga       120
     tccacgtgcg ggatcaaaat gggagcttga tgaaatacat gtgtcattgg ataggctcaa       180
     caacgtatgg aaggaattcg aatccatcag cgaccaaatg gccctttttg acgaggagga       240
     ggggtacgtc gatccagcca tcgacaacga aaggtacgag gacaagtact tgcaggcaag       300
     cacattattt cgcaacctga ttcgcacctg tgaagaagct caggagaatg gaagagaagg       360
     caactttaga caatctggca accctgacga ggccgcatca atggcgtcag gagtgggaaa       420
     cgaaaaccta gttcgttttc tggaacaaca acagcagctc aatgagcgtt tggctgagca       480
     acaagccacg cttttgaggg caaactcggc agcaactgta atgcataatg aactgccaaa       540
     aatccacatc aagctgttca ctggcgacta caaggagtgg ccagccttca agaacatata       600
     cgagagcaca atccatagca agcagcattt gacagcaata caaaagttcc actacttaaa       660
     aacgtacatc actggagaag cagctgactt gattcgccat atgccaatta cggatgcagc       720
     ttacgaggct gcttggactt gcctgattga tcgctacaat agaccacgtc acattgttaa       780
     cactctgctg gagacatttg tcaacttacc ttcgaccgcc agagcagatg taacagttct       840
     gcgcaaggtg acggacggag ccaccgaaat tgtacgcggc ctggatgcag cagggcaaac       900
     tcaaagggac tgctgggtta tacactttat tctcggtaag atcgatgctg aaacccgtcg       960
     caaatggatc gaaggaagcc gggatctgga atctccgtct gtggatgatc ttctcaagtt      1020
     tttagaccga cgttgcgagg aatttgagct cagcaaaagt gagtcagact tagactctaa      1080
     ggtgggtcca caacatggca aggcaaagcg atcggcacac gctttagtat cgatggaagc      1140
     aacctcttgt gtgaagtgta actccaagga gcacaagatc tacgcctgct cacagtttgc      1200
     tgaattgtca gtcgagcaga gacgcacatt tgttaaggcc aaatccatgt gtttcaactg      1260
     ccttaagcct gggcatgtgt cgcgaaagtg tgagtccaaa ttcacatgta agttttgcca      1320
     caatcgccac cactctctgc tacacgcaga ggttattggt tcgcaagccg ctgtctctac      1380
     aacacaccca cgagatgaaa ggcacatccc aagcgctccc gaagatgcta cggtcaccat      1440
     cagccatatt gcacgggcac aagtggctgc cacagctgaa gccttgtgca acggatcaac      1500
     aaccgcaacg cagccacaag ggctacgaaa gagtgcattg ccaacagctc tagtgtttgt      1560
     caaaaacgca aagggatcgc acaccacctg ccgtgtgctt ttggacagtg gttcggaact      1620
     gtcgtacatc tccgagcggt gcgttcaggc wctcggactg gcacgctcgc cgtcacgaat      1680
     cttggtgtca gggatttcgt ctatcaaggc tgagacaact agaggctgca gcacactgga      1740
     cttgcagtcg aggatctcgg atcacacaat gaaggtacgt gcccacatac tcagcaaaat      1800
     tacctccaca ttggcaagac acgatatcgg ctcctcaaca ctcaaggcat tcgctggctt      1860
     tgagcttgcg gattctgact atcagtcgtt ggcgccagtc gacatactcc tgggcagcga      1920
     ctacgtttgg accgtgttca ccggtcaaaa gatgttcgac aatgagggca acatcatcgc      1980
     catttcgaca atatttggat gggtcataac atctatcgta accaccggct gttcatctac      2040
     aacaacaatg cacacggcta ttgacattga cgcatctcta cgtcgctttt gggagctcga      2100
     ggatgtcacc atttctggca gtaagggtcc tggatcagtt agcccacgac catcaacacg      2160
     agtttcctac ctctgcaaag atccagaaag agcagtttca tgtggacgac gtactgacgg      2220
     gagcacatac cgaggaggag ctcattcaca atcaaaacga gttgattcaa ttgatgaaat      2280
     gtgcggtatg gaacttggaa aatgggtttc aattcatcac gtatcgccga caaagctctc      2340
     gcggccaccg acgtacaagg aaaagggtcc aattctacag caaaggttct gggcattcat      2400
     tgggatccag aagaggatat gttatccaca aggtctgcct cacaacaaat ccggacaaca      2460
     ccaaacgcca agtgctgtca gatgtggcac gcatctttga cccgctgggt attctgtcgc      2520
     cagtggtggt gcagtttaaa attctgttcc aagaattgtg gctgctcgat ctcggctggg      2580
     acacggagct tcctccgaaa attgcggact ggtggaataa atgccgcaac gacctacaca      2640
     tactgcgaga tcttcgcctg ccacggtttg tccaaaacaa taaagatcac acgaactgca      2700
     cggattttca gatgcctcca tcaaggcata ttccgcagtc atctatagca gagtggtgcg      2760
     agcagatggc gccatcagtc aaggctgcgc tacaacacaa ggacattgaa gtacatgcat      2820
     ggtgcgactc aaccatagtc ttggcgtggc tttcacatcc accatctaag ctcaaaacat      2880
     ttgtagccaa tagaacctca gaaatactcg aagccttacc gcgcaacgct ggcatcacgt      2940
     aagcacaaag gagaatccgg cggactgcgc cactcgagga atgtttgctt cagatctcct      3000
     ccatttcgac ttatggtgga tgggaccttc atggctgcaa gatccagaaa tgctagcggt      3060
     aaagttgagc tgtaaaaaat tctgttcttc cctttcagaa aaccatgtca aagaagaagt      3120
     gaagaccacc gcattaacca ctcaggaagc gtgctcattg tcaccaatcg aagctctggc      3180
     tcaacgcatc tcgtcctgga caaagctggt acgcgttgta gcttacgcct tacgcttcat      3240
     ccaaaagacc aaggccatta aatctctaac gctgacaaat ggaaagatgc tcacctttga      3300
     ggagattcag gctgctcgca ttctctgcct gaaagaggct cagagatgtt tcatggagga      3360
     ccgcaaacta ctgacagaaa ataagccact tcacagccgc tcacagttgg tgaagctttc      3420
     accgattatc tgcaaggatg gccttcttcg agttggtgga cgactggaca actcacaatt      3480
     accagctgag gcaaaacacc ctatactgct tccaaagtcg aaccgcatca caaaaatgat      3540
     tttggagtac gaacatatat ccaatcttca tccaggagtt tctgcactat ttgtaattgc      3600
     tcgacaaagg tactggatct ttggtgcacg gaacctgata agaaatctgg ttcacaactg      3660
     cattaaatgt ttccgtcaac gtaaactcac ggagcaccaa ttcatggccg atctaccagg      3720
     catccgtata acagaagctt tacccttcca gcactctggc tgtgattacg ctggaccatt      3780
     catactcaaa gaaaggggca atcccgaaac taagggctac atatgtctct ttgtttgcct      3840
     tgtaacatca gccatacatt tggaactagc caccgatctt agcacagaca cattcctggc      3900
     ttgtcttcgg cgtttcatgt cccttcgagg aaagtgctca cagatcttca gcgataatgg      3960
     gacgaatttt gttggtgcca aacggacttt agatgagatg cagcaacttt tatcttcgca      4020
     ggagcatcaa cgcaatgtaa cacaatcgct ggccaatgat ggaatcaagt ggagtttcat      4080
     acctccccat tcgccacatt ggggagggaa gtgggagtca tcagtacgct ccgtaaaatt      4140
     gcatctgcgt cgtgtcgtgg gaaaaactgt tctaaccttt gaacagatgc aaactctgat      4200
     tgctcagatc agtgctgtgg tgaactcgcg accgctatgc tacacacctg acactgatct      4260
     cacctacttg tctccggccc attttttaat tggacgccca ttcacaactg ttccagaggg      4320
     agtacctgac tcatttaccg atcaatcgcc tggactattg gcagcacttg caagcaatgt      4380
     accaagggtt ctggaaacgc tggcgccaag agtatttaac atccctgcag caacgtcaaa      4440
     agtggaacaa caaggaacgt aacatcgcag tagacaacgt agtcctcgtc aaggactcaa      4500
     atctccctcc agcagcttgg atattagccc gtgtactgga agcccatcct ggaccagatg      4560
     gacttgtacg cgccgtaaaa cttaagacgt ctactggaga gatgacccgg cccatcacca      4620
     agttagctgt tctgcctagt tctgaaacct tgtttcaggg cggcccggga                 4670
//
ID   BEL-1_DBi-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DBi_;
KW   BEL-1_DBi-I; BEL-1_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-232
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 812-812 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 232 BP; 74 A; 39 C; 39 G; 80 T; 0 other;
     tgttgatgaa cgctttgcag tttcatttga atttgaatct tattattccc ccggtatatg        60
     aaatactaac tttgccattt tttgatatat ttttggtgct gcgtcaccac ttagagattt       120
     tttaggactt agtgttaaga ctacaattga acgcatcgga cacgaaggaa atgaaataaa       180
     gaatacagtc cactcaaaaa ttcgggaaat aaaacgtttt tattctacac ca               232
//
ID   BEL-1_DBp-I repbase;    DNA;    INV; 5695 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DBp_;
KW   BEL-1_DBp-LTR; BEL-1_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5695
RA   Jurka J., Kohany O. and Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 624-624 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4304-4945] - Integrase core
CC   LTRs are 92% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..5694
FT                 /product="BEL-1_DBp-I_1p"
FT                 /note="DUF1759, DUF1758, reverse transcriptase,
FT                 peptidase A17 and integrase."
FT                 /translation="MNSSGAVTGAPTPTRSAILKCKALGILQDLQRIQGAL
FT                 QPISKVDDAMLHVRHGQIATMFSDFKAIHGELEDLDILQISSDLRWTVSEL
FT                 VATMQAEIEHETTLRSSRIAAHSTLANGMSTMQADPGLGQSFQVLPPLPLP
FT                 TFSGGYSEWAEFYSIFSTIVGSNPRISKVEKLQRLRSCLRESAFEAVRSLE
FT                 VSDENYDVALNLLEKRFNNRRLIFQAHVNEILGLSLLESGSIAALRGLSDK
FT                 FNAHMRALQNLGTSVQIASCIIVQVLLQRLDPATQAKWEESQNSSGSDAIP
FT                 TWESMAEFLEQRCRTLEAMDVAMAAYAPGAHVGRRRGANNSRSSFIVTNSL
FT                 PSTCALCGGWSHIMSACPRFLSMPPEIRLGEARRLGLCRKCLQTGHHMREC
FT                 LAANCRSCGRRHHSLLHFLEPQASSGQPLVGPPTSAIAEVAEPVASSPSTA
FT                 NALVAQGRSGDISLLATANIFVRSRAGSLVPCRALLDSGSQVHVITSRLAS
FT                 QLQLRRYKSFMAVSGIGDTGFATDGFSVDVLLRSHCSEYSALVNAVIAANI
FT                 TDLQPSFSLDVSSWNIPGNLSLADPEFFRPQRIDLLIGASLFYELLCVGQI
FT                 KLSAGLPLLQKTRLGWVVCGGGSHVQRRSLVSTAHKDVPESATMLDDQLDS
FT                 LLRRFWEIEDCSEPIVKRTKEELDCDAHFVQHVARLDSGAYAVRLPLKCGS
FT                 KLLGESYPQAVRRFLSLERKLCRRPQLKEQYAAFIKEYLELGHMSPVPXDA
FT                 SVTGQYFLPHHCVLKEDSSTTKLRVVFDGSAVTTSGYSLNDVLMSGPVIQP
FT                 KLLHILLRFRCHRVAITGDICKMYRCVRVFPEDSYLQCILWRDSTQDELQV
FT                 FKLETVTYGTKPASFLAVRTMHQLADDEQLMFPKGAEILRRDFYVDDLLSG
FT                 GDSIDEAISIMQQTSAILAKGHFRLRKWCSNVADVLDKVPEEDRESFLRFD
FT                 DGSNFTKTLGLAWDPATDRLLFSFEGIQSISKPTRRIVLSSVARLYDPLGL
FT                 VGPVISKAKIFLQKLCREKLSWDESLPQALHCDWNMICSSFVSTQRAEFPR
FT                 WVLTSKSEVEVHGFCDASIEAYGACVYVVSKGAGSASYLLCCSKSRVAPLK
FT                 TVTVPKLELSGAELLARLMSEVEQLKVYVGKYFCWCDSAVALSWIREEPSR
FT                 FNVFVANRVSTIQKLTREMEWRYVPTSLNPADILSRGALPNELVENKLWSH
FT                 GPPFLIGSQEAWPTAVPSERSTLELRARVLLIQSPYVDITAVSKYANSFPA
FT                 LQRVFAYVYKFSQRIHHNGVTASDIKSGTQLLLRLVQRVHFWEDIKALQNG
FT                 KXIAVSSALASSSPFLDKFGLLRVDGRLKNSSLDFDSQHPIILPRSHPVTQ
FT                 AIIVDFHERNLHTGPRALLAIIRSQYWPIGGRKTVTKAIHKCIRCFRTKPR
FT                 LLEHIMADLPEQRVSGSQVFGVTGVDFCGPFYYKPEVRNKAPVKCYVSIFI
FT                 CFATKAVHLELVRDLSTMSFLQALKRFICTRRRPQHIWSDNATNFVGAKNE
FT                 LKELRRLFLSEEHQRALLEFCSMESIEWHFIPPRSPHFGGLWEAAVKTAKH
FT                 HFYRAVGSAVLGFEELRTLLCHIGAVINSRPLLSLSENPADLDVLTPAHFL
FT                 TGGPSVSFIEPDVTKLNFNRLDSWQRVSFLQQSFWSRWKEEYLSLLQQRSK
FT                 WRASGPALAPNDVVLVKDENLPPMKWPLARIMELIPGRDGIFRVAVIKTSS
FT                 GITKRAVTKLCLLPLKDEVGVEAPTGGR"
XX
SQ   Sequence 5695 BP; 1338 A; 1361 C; 1430 G; 1562 T; 4 other;
     ttgaaaacgc tcaatgacca aacattggtg aaccccgacg tgatcgttaa tatatttata        60
     tacacataaa caaattacta aaacaaaaac aaaacaattt tgtaaacagt gttatgtgaa       120
     aaattatcat acgtggctaa taagtttgtt tacaataata aacaaattat aatatattat       180
     tatattatac atacatacag gcataaacat aaacgttagt tcacaagcac acatacatat       240
     ttacgatcca caacgcaagt gcattcgccc gcgcatagac ttcatacaaa catacgatcc       300
     acaacgcaag tgcattcgct cgcacatagc ttcatatata tatacattcc acaattccgc       360
     tacggttctg agcgcacagt gggacagatc gtgttcgccg cgagcaaata aaatttattt       420
     cgggttgttc ggaactcaat ataataaatc atgaactcca gcggcgccgt cacaggagca       480
     cccactccaa cccggagtgc tattttaaag tgcaaggccc tgggtattct ccaggactta       540
     cagaggatcc aaggagctct tcagcctatt tccaaggtgg atgatgccat gctacacgtg       600
     cgacatggtc agatagccac catgttcagc gacttcaagg ccatccacgg ggagcttgag       660
     gatttggaca ttttgcagat cagcagtgac cttcgatgga ctgtttcgga gctcgtagcg       720
     acgatgcagg cggaaattga gcacgagacg acccttcgct catctcgaat tgctgcccac       780
     tccacccttg ccaacggaat gtccaccatg caggctgacc cagggttagg tcaaagtttt       840
     caagtgctgc ctcctttgcc gctccctacg ttcagcggtg gatactcgga atgggctgaa       900
     ttttactcga tcttctctac aatcgtcggc agcaatcctc gtattagtaa ggtggaaaag       960
     ttgcaaaggt tgcgatcttg ccttcgggag tccgctttcg aagcagttcg ttccttggaa      1020
     gtctccgacg agaactatga tgttgcgctg aatttattgg agaaacgatt taataaccgt      1080
     cgcttaatat ttcaggcaca cgtgaacgag attctgggcc tcagtctgtt ggaaagtggc      1140
     tcaatagcag ctcttcgagg tctttcggac aaattcaatg cccatatgcg agccttacag      1200
     aatttgggta catcagttca gatcgccagc tgcatcatcg tccaagttct gcttcaaagg      1260
     ttggacccag ctacccaggc caagtgggag gagagtcaaa actcctcagg ttcagacgcc      1320
     atccctactt gggagtcgat ggccgaattt ttggagcagc ggtgtaggac gctggaggct      1380
     atggacgtgg ccatggctgc atacgccccg ggcgctcatg tgggaaggcg tcgaggtgca      1440
     aataatagta gatcatcctt tattgttact aattcgcttc cctctacctg tgctctatgc      1500
     ggtggatggt cccatataat gtctgcatgc ccccgatttc tatcaatgcc ccctgagatc      1560
     cgccttggtg aggccaggcg actcggtctt tgtcggaagt gtctgcaaac gggccatcac      1620
     atgcgtgagt gcctcgctgc taattgtcgc agttgtggaa ggaggcatca cagcctgctg      1680
     catttcctgg agccgcaggc atctagcggc cagcctttgg ttggtcctcc cacgtcagcc      1740
     atagccgagg tcgccgagcc tgtagcctct tcgccgtcca ctgctaatgc actagttgct      1800
     caaggtcgca gcggcgatat atcgttgctt gctacagcga acatttttgt tcgtagtcgc      1860
     gctggatccc ttgttccatg ccgagctctg ttggattctg gatctcaggt gcacgtgatc      1920
     acttcccggc tggcaagtca gctgcagctc cggaggtaca aatcattcat ggcggtgtct      1980
     ggtattggag ataccggctt tgcgacagat ggattctctg ttgatgttct cctacgttcc      2040
     cactgttccg aatactcggc cctggttaac gccgtcatcg ccgccaatat cacggacctg      2100
     cagcctagct tcagtttgga tgtctccagt tggaatattc ctggcaatct ttctttggct      2160
     gatcctgaat ttttccgccc acagcgcatc gaccttctta tcggagccag tctgttttat      2220
     gagctgttgt gtgttgggca aattaagctc tcagccggcc tgccattgct gcagaaaact      2280
     cgacttggat gggtcgtgtg tggaggcggt tcacatgtcc agagaagatc actcgtttcc      2340
     actgcccaca aggatgttcc ggagagcgca acaatgctgg atgatcagct ggattctctg      2400
     ctccgccggt tttgggaaat cgaagactgc tccgagccta ttgtgaagcg gacgaaggaa      2460
     gagctagatt gcgatgcgca tttcgtgcaa catgttgctc ggctggattc cggcgcttac      2520
     gctgtgaggc ttccgttaaa atgcggttct aagttgctgg gagagtctta cccccaagcc      2580
     gttcgacgat ttctttccct cgaaaggaag ctctgtcgcc gtcctcaatt gaaggagcaa      2640
     tatgctgcct tcataaagga gtatttggag ttgggtcaca tgtctccagt ccctkctgat      2700
     gcgagcgtca ctggtcaata ctttcttcca caccattgtg ttttaaagga ggacagttca      2760
     acaaccaagc tcagggttgt ctttgatgga tctgctgtca caacttctgg atattcattg      2820
     aatgacgtgt tgatgtctgg cccagttatt cagccaaagt tactgcatat tctgttaagg      2880
     ttccgatgcc atcgggtggc cattactgga gatatttgta aaatgtatcg ttgcgtcagg      2940
     gtttttcctg aggacagcta tcttcagtgt attctttggc gggattccac ccaggatgag      3000
     ttacaggttt ttaagctgga aacggtcacc tatggaacga agcctgcctc atttttagca      3060
     gttcggacaa tgcatcagtt ggcagatgat gagcaattaa tgtttccaaa gggggccgaa      3120
     attctgcgtc gcgactttta tgtggatgat ctgctttccg gaggcgactc tatagatgaa      3180
     gctattagca taatgcagca aacatccgcg atccttgcca aaggccattt tcggttaagg      3240
     aagtggtgct ccaatgttgc tgacgtgctg gataaggtgc ctgaagaaga tcgggagtct      3300
     ttcctaaggt ttgatgatgg cagcaacttc acaaagacac tgggtcttgc ttgggatcct      3360
     gcaactgacc gcttgctatt ttcttttgaa gggattcagt caatctcaaa gcccactagg      3420
     cgcattgtgc tttcttcagt cgctcggctt tatgacccct taggccttgt tggtcctgta      3480
     atttcaaagg caaagatctt tctccagaaa ctgtgccgtg agaagttgtc ctgggatgaa      3540
     agtcttcctc aagctcttca ctgcgactgg aatatgattt gtagcagctt tgttagtacg      3600
     cagcgcgccg aattccctag atgggtgcta acatcgaaat ccgaggtgga ggtccatgga      3660
     ttctgtgacg ccagcattga ggcgtatggg gcatgcgttt atgtcgtgtc caagggcgca      3720
     ggatctgcaa gctatttact ctgctgttcg aagtcccgag ttgcgccgtt aaagactgtt      3780
     acggtgccka agctggagtt atcgggagcc gagttgttgg ctcgacttat gtcggaagta      3840
     gagcagttga aggtctacgt tggaaagtat ttttgctggt gcgattctgc tgtggctctg      3900
     tcttggattc gagaagaacc ctctcggttt aatgttttcg tcgccaatcg agtttcgacc      3960
     attcagaagc taactagaga aatggagtgg cggtatgttc ccacttcttt gaacccagca      4020
     gatatcctgt cgcgtggtgc tcttcccaat gaattggttg agaataagct gtggtctcac      4080
     ggtcctccgt ttctcattgg atcccaagag gcgtggccaa ccgcggtccc atctgagaga      4140
     tcaaccctgg agttacgtgc aagggtcctg ctcattcagt ctccgtacgt ggatataaca      4200
     gcggtttcta agtacgctaa ttcgtttcca gcactgcaga gggtattcgc ttacgtatac      4260
     aagttttctc aacgaattca ccacaacggt gttacggcta gcgatataaa atctggaaca      4320
     cagctgttat tgcggctagt gcagcgtgtg catttttggg aggacataaa ggctcttcaa      4380
     aatggaaaag asatagcggt atccagtgcc cttgcctcat cctctccctt cttggacaaa      4440
     tttggactgt tgcgcgtaga cggtcggcta aaaaattcgt cgttggattt tgatagtcag      4500
     catccaatta tacttccaag aagccatcca gttacgcagg ctataattgt tgacttccat      4560
     gagcgaaatt tacatacggg acctcgcgca ctgttggcaa ttattcggtc ccaatattgg      4620
     ccaattgggg ggagaaaaac cgtgacgaag gcaatacaca aatgcatccg atgcttccgg      4680
     actaagcctc ggttgttgga gcacattatg gctgatctcc cggagcaaag agttagcggc      4740
     tcccaggtct tcggagtcac tggtgtggat ttttgtggac cgttctatta taagccggaa      4800
     gtgcgtaata aggctccagt aaaatgttac gttagcattt tcatttgttt tgctaccaaa      4860
     gccgtccacc tggagcttgt aagggatctg tccacaatgt cttttttgca ggctttgaag      4920
     cgktttatat gcacccgccg aaggcctcaa catatttggt ctgacaacgc aaccaacttt      4980
     gttggagcca aaaacgagct aaaggagctg cgccgattat ttctaagcga agagcatcaa      5040
     cgggcactgc tggagttttg ctctatggag tccatcgaat ggcattttat tcctcctcga      5100
     tctccgcatt tcggtggtct gtgggaagcg gctgttaaaa ccgccaagca ccatttttac      5160
     cgagctgtcg gatctgcagt tcttggattc gaggagctgc gaacgctgct gtgccatatt      5220
     ggggctgtta taaattcacg acccttattg tctctttcag aaaatcctgc agaccttgat      5280
     gttctgaccc cggctcattt tttaactggt ggtccgtcag tcagctttat cgagcctgat      5340
     gtcacaaagc tgaacttcaa ccggttggac agctggcagc gcgtgtcttt cctgcagcag      5400
     tctttctggt cccgatggaa ggaggagtac ctaagccttc tccagcagcg ctccaaatgg      5460
     cgcgcctccg gtcctgcctt ggccccgaac gatgtggtgc tagtaaagga cgagaatcta      5520
     cctccgatga aatggccgct tgcgagaata atggagttaa tccctggtcg ggatggtatc      5580
     tttcgagtgg cggtgataaa aacctcatct ggaattacca agcgagcagt gactaagctg      5640
     tgccttttgc cccttaagga tgaagttgga gtagaagccc caactggggg gagaa           5695
//
ID   BEL-1_DBp-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DBp_;
KW   BEL-1_DBp-I; BEL-1_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-298
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 625-625 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 298 BP; 74 A; 67 C; 55 G; 100 T; 2 other;
     tgtcgggtca agcagcaagc aactaattta aacacaacaa ttaattagta actgatgttt        60
     tgctggtcgc aagccgactc tctttcggcc gctcggcttt gctacttcgg cgtttaatag       120
     ttagcgagca tccgctcagc ctattctgsa aggttggcgc cactctcgtt cgtcttctta       180
     ctgcgctcgc atcctaaatt ggatttcmca tattgtacat aaatcctaat ttcatatgcg       240
     gcctgaataa agtttataac gttgaactta attaaattct gatttttatt tactggca         298
//
ID   BEL-1_DEl-I repbase;    DNA;    INV; 5698 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DEl_;
KW   BEL-1_DEl-LTR; BEL-1_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5698
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 500-500 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4732-5313] - Integrase core
CC   'CCATT' target site duplication
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           558..1814
FT                 /product="BEL-1_DEl-I_3p"
FT                 /translation="MTTPADTQLVSLRQQRNTIQRNIVNLKARIEPQNDLA
FT                 ALECQSQILESYFKQILQIQSQIERLDAADDGRQELEDIFIDTKAIIITRI
FT                 GATKKDRPEDASFFNSSVNYATGHHNRLPSLKLPKFDGKYGDYIKFITAFT
FT                 SMVHDDASISAVDKFNYLLSCLSGAALSVVAPFQVSEINYPKALKQLKERY
FT                 DKKVLIFIEHISSLFDIQMMKRSDPAVLRCILDTVSALRESLLSLGTEADV
FT                 MNAILIHLVLSKIDADSKLSYDRVQEYEVLPTWEDCYRSLSRHCQYLESNV
FT                 KRSSDEKPKERPTQNRRAFVAAQGGCKKCSATDHALTQCPSFSSLDWQDKF
FT                 IFIKQSALCINCLRTGHLASRCPSRSRCRVCQGYITLFFIELLIQSNQHRL
FT                 LPTLLSRSRNPHMLFPCFRVIRGAL"
FT   CDS           1667..3391
FT                 /product="BEL-1_DEl-I_2p"
FT                 /translation="MSRLSRLHHTILHRTAHPEQPTQIVAHTSQQEQEPTH
FT                 AVSMLSRHSRRALIPTAVVLIRDKFGIFQPARALLDSGSEINFISEELAKL
FT                 LQLRFERQKYDISGIGDVRTQMRFSVSTTIRSRLSVNEWHLQFAVAKTISL
FT                 NQPERFVDTSQWNIPTEIDLADPGFYMPHKIDLLISTQEFFDLLSNGKISL
FT                 GPGLPCLVNTALGWIVGGKVSEIPQSQIVTCNMARSTELQDALERFWLIEE
FT                 FDSHHNCFTVEEEECERHYLANTKFLTSGRVQVCLPFKENPHKLGKSFEIA
FT                 KSRFLQNERRLNRNPLLREMYVKFMKEYIALNHMQLASDFDSQKTHYVIPH
FT                 HGVLRSESTTTKLRVVFDASCKTTSNLSLNELLMIGPSIQQNLILTLLAFR
FT                 LHRHALVADICKMYRQFEVSPDDRMYQLVLWRESSAAPLELFQLNTVTYGM
FT                 SCAPFLAIRSLKYIADHFSKQFPIGAAVLKEEMYVDDLLTGADSVEELHLK
FT                 AAEVTSILSKAGLELAKWNTSKIEGNGAEFQFKVDTKDVTKTLGMSWQPEL
FT                 DVLGIHYLQSLSSPSGASFHLWLTCTIC"
FT   CDS           3448..5664
FT                 /product="BEL-1_DEl-I_1p"
FT                 /translation="MHRLNWDDPLPSELQSQWKRMKKICTIFKPSKFQDLL
FT                 TRHQEIYRKYTDFQMHRSELMAVALYLRTNLNGEFKSILIIAKSKVAPIKA
FT                 ISLPRLELCAAYLLCQTWAKVKEKFENYINNVFFWTDSRIVLQWLTMHSSR
FT                 LNCFVANRISEMQSTTSNIIWRHVPGKDNPADIVSRGCAASELMETIWFSG
FT                 PSFLRQPSSGWPQPVQNSQDTEEELELRKSTVLTCTDSGSKEDVFDYIINK
FT                 FSSYRRILRVIAFVLRVFNRIKANRKLKVVDVIHTSATELQYAFKHIVSHI
FT                 QQKTFFNEIQQLKENKILKPEFQKLNPFLAATDGSNRSITLLRVGGRLAKA
FT                 PISLDAKFPVLLPKDHCLTLKFVEYLHRQHMHAGPKALIGILRLQAWIVNA
FT                 REIVRKIVRRCTHCYHYKPRLMEQIMGSLPGDRFHSQRPFFVTGVDLCGPF
FT                 ATSYRIRSKVPYKTYMAVFICFSSKAIHIELISDLSTNNFILCLKRFVSRR
FT                 GVPLRIYCDNATNFVGARSQLEDFKQQLFDEANTLNVHNFSSIVGFEFKFI
FT                 PPRAPHFGGLWEAAVKSMKTLMIKNLGNTGLTYEELQTIAIEAEAILNSRP
FT                 MAPLSEDPNDGEALSPAHLLIGSSLMSVPEPSIDESRPSYLTRWQRVTYLK
FT                 QQFWELWRRDYLHTLQARSKWLKPDANIQIGQIVIIHEDNTPPQEWILGRI
FT                 TNTHFGADGRVRVAEIKVKNGTIRRPICKIAPLPEQIGA"
XX
SQ   Sequence 5698 BP; 1629 A; 1328 C; 1231 G; 1509 T; 1 other;
     ttttggcgac cgtgacagga ctctgcattc ggcaagtccc aacataaatc ctattcgcac        60
     acagaatcat tctctctgca ttcggcggag aaatagattc cagcatcgct agaccgccag       120
     aatactttgt gtattttcgg cacgcattgc acttcatcgg cctattggca gggcatttgg       180
     catcatcgtt ggatctccgg atctccagaa gcatcgttgg atcaccggaa tcatcgccac       240
     tggttcgtcg tggatacctg cacaccccat aaccgtcgca agtacagttt cgcaagctaa       300
     ggaacagcgg cacaaagkgg acgaaaaacc gtaagctaga ctcgcaaatg caatcgctgt       360
     tttgtcattc cactctgacc atatacacac atacttgtgc agctggtctg caaataaatg       420
     agccaaaaat tgagttactc tcgcaagcat cggagtgttt ctttttctca ctcagaacca       480
     aagggcgttg ccaacatatt cggataaggt attgtttcac aataacactc agttttcgct       540
     aattaaccct tcgcaatatg actacgcctg ctgatactca actcgtgtct ttaagacaac       600
     aaaggaatac aattcagcga aacatagtta atctcaaagc tcgcatcgaa ccgcagaacg       660
     accttgctgc ccttgaatgc cagtcacaaa ttttggaatc gtattttaag caaattcttc       720
     aaattcaatc gcagatcgaa cggctggatg cggccgacga cggccgtcag gaattggagg       780
     acatattcat agacaccaaa gcaattatca tcactcgtat tggggcaaca aagaaggacc       840
     ggccagaaga tgcaagtttc ttcaattcat cggtaaatta cgcaactggg caccataatc       900
     gtttaccatc gttaaagcta cctaagttcg acgggaagta tggtgactat ataaagttca       960
     tcactgcctt tactagcatg gtacatgatg acgcttcaat atcagctgtt gacaaattca      1020
     actacttgct tagctgtttg tctggagccg ctctgagtgt cgtggccccc tttcaagtgt      1080
     ccgaaatcaa ttatcctaag gcgttaaagc agttaaagga gcgctacgat aaaaaggttt      1140
     tgattttcat agagcacatt tctagcttat tcgatattca aatgatgaaa agatctgatc      1200
     ccgcagttct tcgttgtatc ttggataccg tttccgcgct gcgtgaatcg ttgttgtcgt      1260
     taggaactga agcagatgtt atgaacgcaa tattaattca tcttgtttta tctaaaattg      1320
     atgcagattc aaaattatcc tacgatcggg ttcaagaata cgaggtgttg cctacttggg      1380
     aggattgtta ccgcagttta agccgtcact gtcaatattt ggagagcaac gttaaacgat      1440
     catctgatga gaagccaaaa gaaaggccca cacagaatag gagagccttt gttgcggcac      1500
     agggtggttg taaaaaatgt tctgctactg atcacgctct cactcagtgc ccttcattta      1560
     gttcactaga ctggcaggat aaatttattt tcatcaagca atccgctctg tgcataaatt      1620
     gtttgcgcac cggccatttg gcgagcagat gtccaagtag atcgcgatgt cgcgtttgtc      1680
     aaggctacat cacactattc ttcatagaac tgctcatcca gagcaaccaa cacagattgt      1740
     tgcccacact tctcagcagg agcaggaacc cacacatgct gtttccatgc tttcgcgtca      1800
     ttcgaggcgc gctttaattc ctacggcagt agtgttgatt agggataagt tcggaatatt      1860
     tcagccagcc agagctttgc ttgactcagg ctctgaaata aatttcatct ctgaagagtt      1920
     ggccaagctc cttcagctca gattcgaaag acagaagtat gacatttctg gcataggtga      1980
     tgtcagaacg cagatgagat tttctgtctc aacaactatt cgatcacgac tatcagtaaa      2040
     tgaatggcat ttacaattcg ctgtagcgaa gacaatatcg cttaatcagc cagagcgttt      2100
     cgttgacact tcacagtgga acatacctac agagattgac cttgcagatc caggattcta      2160
     catgcctcac aagattgact tactcatcag cacacaagag ttttttgatt tactttcaaa      2220
     tggcaaaatt tctctgggtc ctggccttcc ttgcctggtc aatactgcac ttggttggat      2280
     cgttggcgga aaggtttctg aaattccgca atcacaaatc gtcacatgca acatggcacg      2340
     ttccacggag ctgcaagatg cattagaaag gttttggcta atagaggagt ttgattcgca      2400
     ccataattgt ttcaccgtag aagaggagga atgcgaacgg cattatttgg caaacacaaa      2460
     gtttctaaca tctggacggg tccaagtttg cttgcccttt aaagagaacc ctcacaagct      2520
     aggaaagtct tttgaaattg ccaaatcccg gtttctgcaa aatgaacgca ggttgaaccg      2580
     caacccgttg ttaagagaga tgtacgtgaa attcatgaag gaatacatag ctctgaatca      2640
     catgcaattg gcatctgatt tcgactcgca gaagacccat tatgtaatcc cgcatcatgg      2700
     agtccttaga tcagaaagca cgactaccaa gctgcgtgtt gtgtttgatg catcgtgcaa      2760
     aacaacgtcg aacctttctt tgaatgagtt gttgatgatt gggccaagca tccagcaaaa      2820
     tcttatctta acacttctag cctttcgctt acatcgtcat gcacttgtag cggatatctg      2880
     caagatgtat cgccagtttg aagtatcacc agacgatcgt atgtatcaac ttgttctctg      2940
     gagagaatcc tctgctgcgc ctctggaatt gtttcagctc aacactgtca cgtacggcat      3000
     gtcctgcgca ccatttctag caatcaggag cttgaaatat attgcggatc acttctcaaa      3060
     gcagtttccc atcggagcag ccgtacttaa ggaagagatg tacgtcgatg acctccttac      3120
     tggagcagac agtgtcgaag agcttcatct caaggctgca gaggtcacca gcatactttc      3180
     taaggctgga ttagagcttg caaaatggaa cacaagcaaa atagaaggca atggagcaga      3240
     gtttcaattc aaggttgata ccaaagatgt aacgaagaca ttgggcatgt cgtggcagcc      3300
     cgaactagat gttttaggta tacactacct acaatcactg tcatcaccaa gcggagcatc      3360
     gtttcacttg tggctcacct gtacgatttg ctagggctcg tatcaccagt cgttattcga      3420
     tgcaaaatat tggtccaaga gttgtggatg caccgtttaa actgggacga tccacttccc      3480
     tctgagcttc aatcccagtg gaagcgaatg aagaagattt gcacaatctt caaaccatcg      3540
     aaattccaag atttattaac tcgtcaccaa gaaatctatc ggaaatacac ggattttcag      3600
     atgcatcgca gcgagcttat ggctgttgcc ttatatctac gaacaaactt aaatggagag      3660
     tttaaatcaa tactaattat cgcaaagtct aaagtggccc caataaaggc aatttcattg      3720
     ccgcggctag aattgtgcgc cgcgtattta ttgtgtcaaa catgggccaa ggttaaggaa      3780
     aaattcgaaa attacattaa taacgttttc ttttggacag attcaagaat tgttctacag      3840
     tggctaacca tgcactcgtc caggctaaac tgtttcgtcg ccaaccggat ttctgagatg      3900
     caatcaacca cttcaaacat tatttggagg cacgttccgg gcaaggacaa tcccgcggac      3960
     atagtgtcaa gaggctgtgc agcatctgag cttatggaaa ctatatggtt tagcggacca      4020
     agcttcttac gtcaaccctc atctggatgg cctcaaccag tgcaaaattc tcaggacacc      4080
     gaagaagagt tggagctgcg aaaatcaaca gtcctcacat gtaccgatag tggcagcaaa      4140
     gaagatgtgt tcgattacat tatcaacaag ttctcatcct atcggcgcat tttgcgagtc      4200
     atagcttttg tgttgcgcgt cttcaatcga atcaaggcca acaggaaatt gaaagtagtc      4260
     gatgtaattc atacatcagc aactgaattg caatacgcgt tcaagcacat cgtatcacat      4320
     atccagcaga agaccttttt caacgaaatc cagcagctca aggaaaacaa gattttaaaa      4380
     cccgaatttc aaaaactaaa tccgttccta gcagcgactg acggatcaaa ccgttctata      4440
     acactattac gtgtaggagg ccgcttagcc aaggcgccca tttcactcga tgccaaattt      4500
     cctgttcttc ttccaaagga tcattgctta acattgaaat ttgttgagta tctgcaccgg      4560
     cagcacatgc acgctggacc aaaggctctt attggaattc tgcgactcca ggcttggatt      4620
     gtaaacgcca gagaaatcgt tcgaaagatt gtacggcgct gcacacactg ttaccattat      4680
     aagccgcgtt taatggaaca aataatggga tcacttccag gtgatcgctt tcattcacaa      4740
     cgaccctttt ttgtaactgg agtcgaccta tgtggaccat ttgccacatc ataccgcatt      4800
     cgaagcaaag tgccatataa aacatacatg gccgtgttta tatgcttttc gtcaaaagca      4860
     atccacatag aactcatttc cgatctgtct actaataact ttattctttg tttaaagcgc      4920
     ttcgtcagtc gcagaggcgt cccactacgc atctattgtg acaatgcaac taatttcgtc      4980
     ggggcacgat ctcagctcga ggactttaag cagcagctgt ttgacgaagc caacacattg      5040
     aatgtacata acttcagcag catcgtggga tttgagttta agttcatccc tccgcgagct      5100
     ccccactttg gcggcttgtg ggaggccgca gtgaagtcca tgaagacctt gatgatcaaa      5160
     aacttgggca acactgggct aacgtacgag gagcttcaaa cgattgcaat cgaggcggag      5220
     gcaatcttaa actcaagacc aatggcaccc ctatccgaag acccgaacga tggagaggca      5280
     cttagcccag cgcacctgct gattgggtcc tctctgatgt ctgttccgga gccttcaatt      5340
     gacgagagca gaccatccta tcttacgcgg tggcagcgcg taacgtactt gaagcagcag      5400
     ttctgggagc tatggaggcg tgattattta cacacacttc aggcgcgctc caaatggctc      5460
     aaacccgatg ccaacattca aattggccaa attgtaataa ttcacgagga taatacacct      5520
     ccccaggagt ggatcctggg tcgcatcacc aacacgcatt ttggagctga tggacgagta      5580
     agagtggccg agatcaaggt gaaaaatgga accattcgta gacccatctg caagatagcg      5640
     cccctgcctg agcaaattgg tgcttgaata ctccttggat cattcaacgg gcggagaa        5698
//
ID   BEL-1_DEl-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DEl_;
KW   BEL-1_DEl-I; BEL-1_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-295
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 501-501 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 295 BP; 91 A; 57 C; 38 G; 108 T; 1 other;
     tgttcgatga catcataact gaacgccaat ttacatttta ttattatttg tttataaata        60
     actttgttta aaaacagttg attaatttga attctttgcc aacttgtact acttaattac       120
     ccctcactgt aatcatatgt ttgtattttg aattcgctct tatacataca gctcacacat       180
     gtacatatcg ctcwttgtaa tctcaaactt gaacattaaa atcagtgcat attagagatc       240
     gaaacaactc ggacgtttta ctctgataac tctgcatttg ggcagagtcc gcaca            295
//
ID   BEL-1_DEre-I repbase;    DNA;    INV; 4261 BP.
XX
AC   .
XX
DT   27-MAR-2011 (Rel. 17.03, Created)
DT   27-MAR-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila erecta genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DEre_;
KW   BEL-1_DEre-LTR; BEL-1_DEre-I.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4261
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 371-371 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [451-834] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1552..4260
FT                 /product="BEL-1_DEre-I_1p"
FT                 /translation="MLIHLIASKLDPATREKWEESLPTYKLPKWTEMSTFL
FT                 EKRCRMMENLENAVVTQTSSAQVGKLKPYRNALISSSGPSCPLCNAKDHNL
FT                 FKCPKFLNLIPTMRYKEAKRLHLCLNCLHKGHSLQQCKSGHCKHCQSKHHS
FT                 LLHMDLSTSTVVRQSPLDSQPNSSSILVSKSTSIASPKPKNENQTEYVMLA
FT                 TAVVYLKNRSGVFVPCRALLDNAAQLNLITTRLANQLRLKSHRTGIRISGV
FT                 GETSLSSNSSIDVDLKSRDSSYHTSLTAAVQNTITGYHPHFDIKSSDWNIP
FT                 LNIHLADPLFNKSQRIDLLIGGGLYYGLLCAGQIKIAENLPYLQKTRLGWI
FT                 VGGIVAPSSRSLSALAVSNLEASHSPEVEDLPNILKRFWEIDHCVGSASSI
FT                 SDDDLLCEQLFQKGYSRLSSGQYSVRLPAKFPLNSLGDSYERALRRLKSLE
FT                 NKFAKDLDLKLQYSAFLKEYLDLKHMSLSNKQSTLPQFYLPHHCVRKTDST
FT                 TTKLRVVFDGSAKSTTNQSLNDLLLAGPSIQPKLFTTLLRFRFFRIALCGD
FT                 ICKMYRCVRMTHPDQYLQCILWRDNPDDEVKVYTLDTVTYGTKPAAFLAIR
FT                 AMQQLAQDEEADLPLAANIIRRDFYVDDLISGGDSVEEVTQIRMQVKELLR
FT                 RGHFPIRKWYSNEAAALEGESEEDLEKLLQFHDGTDITKTLGLVWDPSRDH
FT                 LIFNFSTDLAVEKATKRSILSTIAKFYDPLGLISPIVTKLKIFMQLLHKDK
FT                 LDWDESLPLNLHTSWLEHKSQFSTARYLKFPRFVLLPSASLEIHGFCDASI
FT                 SAYGACIYVRSESQGSITSHLLCAKSRVAPLKTLTIPKLELAAAHLLSDLI
FT                 YNISKIVPFSCSFYCWSDSTIALSWIREAPSNFNIFVSNRVAQIQDNTKN"
XX
SQ   Sequence 4261 BP; 1206 A; 983 C; 833 G; 1237 T; 2 other;
     aagatcgccc tcgctcatag ggtgaactta cggttcaaga cattcgaagt ggcacttatt        60
     tactcatcaa aggcatacaa ttgattcatt ttgctgacga gtttaaggct ttgcactcga       120
     aaaaggaact ctcatccaaa agcgatctac tttccttgca tccatttatc gacgagactg       180
     gattaatacg agttggcggt tgacatcaac gcgcgacatc ccatactgct tccaaaacga       240
     catgccgtga cttcatcaat gattttgttc taccatcaca agttcctaca cgctggacca       300
     caaagtcttc ttgctacgat tcggcaaaga ttttggccaa tcggtggacg aaaaacagtt       360
     gcagccattg tcagcaagtg tgtacgatgt tttcgtctga agccaaagtt gtgcgagcat       420
     atcatggctc cattgccagc cgatcgtgtg cagccaaatc gcccatttct catcacagga       480
     gtcgattttt gtggcccatt ttattgcaaa tctgaagtga gaaacaggcc tgcatccaaa       540
     tgctacatct caatttttgt ttgcgtcacc actaaggcaa cacatttgga tgtggttgaa       600
     gacctctcta cgtcatcatt catcgctgct cttaaacgat tcgttagtat cagaggaaaa       660
     ccaaatacaa tttggtcaga caacgcaaca aactttgttg gtgcaaagaa tgagctcaag       720
     gaacttcgtc aactcttcct cagtgatccg caaaccaagg atttcaacaa cgccctttcc       780
     tcaatcggtg taaaatggca ttttatccca cctcgctctc ctcactttgg tggattatgg       840
     gatggcaacg cgtctgccaa attcagcaaa acttttggcg aaagtggagc tccaattacc       900
     tctctcttct tcaagagcgt ggcaagtggt gcaaggccgt tctaaatctg gagccaaaca       960
     acattgtcgt catcctccac ttcaatggcg attgggaaga attgaagaaa ccattcctgg      1020
     cgaagatgga agcgttcgtg ttgccataat acgcacttct actggactaa tcaagagagc      1080
     cgtcaacaag attgctgttc tgcccgtcga taccacttcg gttgaaatca aagtactttt      1140
     cggtgttcag ctagcagctc tcgactccct gaattcaaat taccgcgttt ctccggttct      1200
     tacatggatt ggccagattt ttactccatg ttcaagaacg cagttggaaa actcgaggat      1260
     ctgagcaaag tggagaaatt tcagcatcta agatcttgct tagatggcgc tgcgttggac      1320
     actatacgat ccctggagct gacaagtgaa aattatgata tcgcattgga tttattattg      1380
     aaacgttttg ataacaaatt attwcmcttt caggcacacg tacggtcaat ttttgggttc      1440
     aaaggtgttg agagaggttc tgcaagcagt ctacgtgaat tgagcgacaa aattaattca      1500
     catttacggg ctttgagcac aatagcatca tcgcaggaaa ttgctgatgg aatgctgatt      1560
     catctcatcg cttcaaaatt ggatccagct acacgcgaaa aatgggaaga gtctttgcca      1620
     acgtacaagc ttccgaaatg gaccgagatg tcaacgtttt tagagaagag atgccgaatg      1680
     atggaaaatt tggaaaacgc tgtggtaacc caaacatcca gcgctcaggt gggaaaatta      1740
     aaaccgtatc gaaatgccct catctcttcg tctggcccct cttgcccatt gtgcaacgcc      1800
     aaagaccata atttgtttaa gtgccctaaa ttcttgaatt tgattccaac gatgcgttac      1860
     aaggaggcaa agcgtcttca tctttgccta aactgccttc ataaagggca cagcttacaa      1920
     cagtgcaagt ctgggcattg caagcattgc caatccaaac accactcatt gcttcacatg      1980
     gatttgagca ccagcactgt cgttaggcaa tctcctcttg attctcagcc caattcatct      2040
     tctattcttg tatctaaatc tacatcgatt gcatcaccta agcccaaaaa tgaaaatcag      2100
     accgaatacg tgatgctagc cacagctgta gtttatctca aaaatcgctc tggagttttt      2160
     gttccttgtc gagctctatt agataatgca gctcaactaa atttaatcac cactcgcctc      2220
     gccaaccaac ttcggctgaa atcccatcga actggcatac ggatttcggg agttggagaa      2280
     acttctctct catcaaatag ttcaatcgac gttgacctta aatctcgtga ttcatcgtat      2340
     cacacatcgc ttactgctgc cgtacaaaac acaatcaccg gctatcatcc gcattttgac      2400
     attaaatctt ctgattggaa tattcctctg aacattcatc ttgcggatcc actttttaat      2460
     aaaagccaac gaatagacct tttaattgga ggtggtctat attatggatt actttgcgcg      2520
     ggccaaatta aaattgcaga aaatttgccc tatcttcaaa agacacgact cggttggatc      2580
     gtaggtggaa ttgttgctcc ctcatcaaga agcctttcag cattggctgt atcaaactta      2640
     gaagcatccc attctccaga agttgaagat ttacctaaca ttttgaaaag attttgggag      2700
     atagatcatt gcgttggatc tgcatcttcc atatcggacg atgatttgct gtgtgagcag      2760
     ctatttcaaa agggatattc tcgactcagc tctggacaat attcagttcg tttgccagct      2820
     aaatttcctt tgaactctct tggagactct tatgagcgtg cattacgccg tcttaagtct      2880
     ctcgaaaaca aatttgctaa agacttggat ttaaagttgc aatactcagc ctttcttaag      2940
     gaatacctcg atttgaaaca catgtcgctt tctaacaagc agtctacttt gcctcaattc      3000
     tatttgccac atcactgcgt tcgcaaaacg gatagtacaa caacaaaatt gcgtgttgta      3060
     tttgatgggt cagcaaaatc aaccacaaac caatcattga atgatcttct tttggctgga      3120
     ccatcaattc aacccaagct attcaccacg ttacttcgat tccgattttt caggattgcc      3180
     ttgtgtggcg atatttgcaa gatgtaccgt tgtgtccgca tgacacatcc tgatcaatat      3240
     ctgcagtgca ttttgtggcg cgacaatcct gatgacgagg tcaaggtata cactttggat      3300
     acggtgacct acggaactaa gccggctgct ttcttagcaa ttcgagctat gcagcaatta      3360
     gctcaggacg aggaggctga tctaccactt gcagcaaata tcattcgccg agacttttat      3420
     gtagatgact taatttcggg aggcgattct gttgaagaag taacgcaaat tcggatgcag      3480
     gtcaaagagc tgttacgacg tggtcacttc ccaataagaa aatggtattc caatgaagct      3540
     gccgctctcg aaggcgaatc tgaagaggat ttagaaaagc tgcttcagtt tcacgacgga      3600
     actgacatta caaaaactct tggtcttgtt tgggacccaa gtcgcgatca tttgatcttt      3660
     aatttctcaa cagatctcgc tgtcgaaaaa gcaacaaaaa gatccatcct gtcaaccatc      3720
     gctaaatttt atgatcctct tggattaata tctcccatag ttacaaaact caaaatattc      3780
     atgcagttgt tgcataaaga caagctcgat tgggatgaaa gcttgccttt aaatcttcat      3840
     acatcatggt tggagcataa atcgcaattc tcaactgcca gatatctcaa atttcctcgt      3900
     ttcgtattgc ttccttctgc gtctttggaa atacatggat tctgcgatgc cagcatatcc      3960
     gcttatggtg cctgtatata tgttcgctca gaaagtcaag gatctattac ttcgcattta      4020
     ctttgtgcta aatcaagagt tgctccttta aaaacactca caatccccaa attggaattg      4080
     gctgcagcac acctactttc tgacctcata tacaacatct ctaaaatcgt tccattttct      4140
     tgcagctttt attgttggtc ggattcaact atagcgctct cctggattcg tgaagcccca      4200
     tccaatttca acatatttgt ttctaacagg gtggctcaaa tacaagataa taccaaaaac      4260
     a                                                                      4261
//
ID   BEL-1_DEre-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   27-MAR-2011 (Rel. 17.03, Created)
DT   27-MAR-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila erecta genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DEre_;
KW   BEL-1_DEre-I; BEL-1_DEre-LTR.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-297
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 372-372 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 297 BP; 73 A; 77 C; 63 G; 84 T; 0 other;
     tgacatggag acatgtgcca atgcagatga acccagccga catattatct cgtggatgct        60
     cgcctcttga gctagtccca tcgagccaat ggtgtgaagg gcctgccttt ctacgctcag       120
     agtcaaacaa ttggcctgca atcgtgccac ctatagcaga gcttcccgaa cgtcgtcgtc       180
     aagttttagt tgcagctcat caacttgata tatcgtttag ctgcaaatat caaaactcat       240
     ttggcaaact gcagcgagtc ttcgcttaca ttcttcgctt tttggaactt cgattca          297
//
ID   BEL-1_Deu-I repbase;    DNA;    INV; 8141 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   10-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_Deu_;
KW   BEL-1_Deu-LTR; BEL-1_Deu-I.
XX
NM   BEL-1_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-8141
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
RN   [2]
RP   1-8141
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   [2]: ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           6860..8092
FT                 /product="BEL-1_Deu-I_2p"
FT                 /translation="MSLSIVLSRSSARNSKSNFTPILITLFCFFIIVPPVI
FT                 FSTMSPRPRSAQSLESRCTRGTQSYRCRVCRGIHPLKQCRRFLRLSAEKRL
FT                 RAVLVNRYCSNCLAHEHSDGSCRRGDCCRTCGQDHHSLLHLVEKPRARRQP
FT                 RQEEHRSRSAGDSTRSVSAGAQPSSVNSRRGSVASRPDSQAGPRPSTSRRS
FT                 SAAPQHSSATGRQASGAPRPSSATHRVPSTARPTASFAPRQLSASRQGTPQ
FT                 DAAAAPTLSSLLQRNSVNVLPTALVRIDTGTRIFNTGALIDPCTPSSCIDA
FT                 SLAACFRLPTTSVGDEQVCSATVGSKTDDSVRLEVVFKIEPHVRVRTPSRE
FT                 LSEAVRAHFRGVTLADERFYLPATISVVLGADMYPRIIQPGFLKIQDGLPV
FT                 AQSTVFGWVVSGACHQP"
FT   CDS           join(1449..4538,4517..6835)
FT                 /product="BEL-1_Deu-I_1p"
FT                 /translation="MPTGDDKNPRPIPAISLDRSQSASPRTPLLKPKATRA
FT                 IQRAKSDENVNTIPDPSQRQTRSVVKMAQSAVEVALKKFIATTDRISQFEA
FT                 NINTPGGPETGSQYMCEVHRDQIRALWEKVEKCYESCSDLLAVSDDNSATS
FT                 AVLESKYSYCYSVYSRCIAQLREKIASQSTQASVNVHTPASTGCRLPPVDT
FT                 EVFAGDYLRWPTFRDLFAAIYIQNSRLTPVEKLFHLLSKTSGDAHAIVAKA
FT                 PLTHEGFVAAWQSLTDRFENRRLLVNSQLKILFNLQAISQESGVALRELQA
FT                 TIQSCLTALEMSAINVEAWDCLLVFMISSKLPKVTLSMWEQSVHNKAEIPT
FT                 WKELDNFLTERHRTLEAIDDVRPSGSGQSPPRSGLPAAPARRLNSYETRVA
FT                 PGQKGCDLCSRENHPIRLCPRFLEMNVDGRSDYIKRKQLCLNCFARGHQQR
FT                 DCTSAHTCFTCHSRHHTLLHRGNPFATAPSPPTPARARPAQTARSTNGSED
FT                 QSDVQVCFASGSGAVLLGTALINVCHLGCSFQARALIDSGSEATFITERLF
FT                 NLVKLPFKTIQAQVSGLNQTISAQSTKLCHFSIRSPSRPGLQLETAAYVLP
FT                 QLAGNLPSYPIPRDRLKGLPDIPLADPNFFESSQVDVLIGADILPSILLGN
FT                 TRANICGSLLGQETIFGWVLTGPLSPANPRSVSVFSTRVARSLGDSLDQLL
FT                 TKFWEVEDVPTQINSESDSVCEHNFVQTTRRDECGKYVVTLPLRDPEQKGS
FT                 ELSASRSFALAQFLRNEQRLKRDPPLKARYDSVIQEYIDLGHMTEVSPTSS
FT                 SATYYLPHHAVFKPESTTTKVRVVFNASSPSANGTSLNDILYAGPVLQSDL
FT                 TIQILKWRYFRFVFNADIEKMYRQIWIDPKHTPLQRILFRNPDGEIRDYEL
FT                 KTVTFGVNCAPFLAIRVLQQLADDEELKYPQASQIIRHFMYVDDVLAGADS
FT                 KTEAQVVIRELKGALESAGFPLRKWTSNSKAILADIPSDHLLRADFLDIDA
FT                 ESTAKTLGVRWKATSDEFFLFRQSVFFVPPELTSGSSFTKRQVLSQIAKLF
FT                 DPAGWLAPFIVRAKMFMQDIWLLDLGWDDALPQDFCQRWVDFLKNYSVLDQ
FT                 IRVPRWVAFRPHLRVEHHGFCDASEKAYGAAIYVRVEVGSTVIVNLLTAKT
FT                 RVAPVKTVSLPRLELCGALLLSEMATAVLPKMPGPASAPYCWTDSTIVLAW
FT                 LQKPACQWTTFVANRVAKIAQFTDVQKWAHVRSEQNPADLASRGVALQDLA
FT                 DNQLWWHGPGWLRGPRSEWPTQGNEAPVTELEKRAVKVHVAKAPPEDLLER
FT                 FSTLDKALRVLAYVCRFIQRARKIRSPFEEHLTANEITSAERLLVSVTQRR
FT                 HFVSEMGCLSEKRPVSASSPIQNLNPFMDSQGLMRACGRVTSSELLQYDER
FT                 HPIILPYDCHLSRLLVQFTHRITLHGGNQLMIRLIRAKFWIPRVRNLVKSV
FT                 VYACKVCVIHKKKLQTQLMGELPKERTSFSRPFTYTGVDYAGPFEIKNYTG
FT                 RACLITKGYVLVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQV
FT                 QSDNGKTFVGAAALLSRDFLQSLKGAVTGAYSHQQLLWHFIPPGAPHMGGL
FT                 WEAGVKSFKTLFYKSTATRKYTFEELATLLARIEACLNSRPLAPMSEDPAD
FT                 LMALTPGHFLVGGPLLVTVEPELKGDTTSIINRWQHLKALQQQFRLRWKEE
FT                 YLKELHKRNKWRAPTRNLRVGDMVVIKEDNLPSNEWRLGRIDAVYPGSDGH
FT                 VRVIDIRTARGLVKRPVAKVVLLPMDASACPQ"
XX
SQ   Sequence 8141 BP; 1763 A; 2351 C; 2062 G; 1963 T; 2 other;
     ttttggtcct tcgagccgga tttcctggat attctggata ctttggattc tggatatctt        60
     cttctaccag cagttcccgg cagtgttccg ccaaaagata agtacgaaat tttttccgtc       120
     tccgtctctc tgccggtctt cagcagtggt ccgaacatta aatttcgttc acactgctgc       180
     aagattttat tttccttccg tgtcaactcc aagtccgagt tttccgacac aacggcagtg       240
     tgagattttc tactcttctt cgtcttcata ttctgccaat ttttccatcc gactccgttt       300
     tgtgtgccgc catattcctc gccgttttcg gcctccccgt tatttgctat tccgctattc       360
     gcttgccaac ggtcgaggca tatgtgcata catataatat acacacatac aaccatacct       420
     ttttcttttt ttggtgcaat taagccgcgt aaaattgacc aagtgaacag tgaaattgtg       480
     tggtgacaaa aataaggcat aattaatatt ggccagccgg tgtgatttat ttccaaaaat       540
     tcctaaattc atttaacagt ccgccggtgg cgtaatattt ttttttccaa tcagtgtctt       600
     ttttttacac cacacagctt tctgttcctc catttataca gtccacagtc cactgtgcca       660
     acctaggcct cacgtgcata catatacttg catatatcat acatactttg tgaaatttgt       720
     ggtgacgaaa ataaagcata ataaattggc agccggtgtg atttttcaaa aatctaagtc       780
     atttaacagt ccgccgctgg cgtgattttt ttttcccaaa gttttttttt acaccacaca       840
     gctttcagtt cctctattta tacagtccgc agtccactgt gccaacctag gcctcacgag       900
     catacatata cctacatata tacatacttg catgcatgcc atatattttc tgcgtccaat       960
     ttcagggaat aaatacgtka caaaatttaa ctgaaataaa atctgtttta aaaaaaaacc      1020
     ggacatttca ctacaaatcc gtgattgtgt cgcctaagtt cgcaacctcg ccggctcagt      1080
     agccgtgttg tgtttttttg gtgctggttt ttttccttcg gggtgaattc cgaacggtac      1140
     ttgtccattc tccgtgccct tagcgcagct tccactccgc atcaggcaac atccgcctac      1200
     aatctcacca aacctcgtct acttctgggt tgtttggttc ctgaagtttt gttttcacat      1260
     tcgatttgtg ccgcacacga tcttcctttc gacatcggcg ccgctagtgc ccactagttc      1320
     cttgtgatcg caatccatcc gcgatctcac cgttctcatc actttagtgt gaccagccac      1380
     cgcttcgaac gagaccccta ttgcgcaagt cagtcgccaa gcgctgacca gctaattgac      1440
     ttttgagaat gcccacggga gacgacaaaa atccgcgtcc gatcccagcc atcagtttgg      1500
     acagatctca atccgcatct ccgcggacgc ctcttttgaa gcctaaggcg accagggcca      1560
     ttcaaagggc aaagagtgac gaaaacgtca atacaatccc cgatccttca cagaggcaga      1620
     ctcgctccgt tgtaaaaatg gctcaaagtg cggtcgaagt ggcgctgaaa aagttcatcg      1680
     ctacgacaga tcgaattagc caatttgagg ccaacatcaa taccccggga ggcccagaaa      1740
     caggctccca atacatgtgc gaagtccatc gagaccaaat tcgggcactt tgggagaagg      1800
     tggagaagtg ctatgagagc tgctccgatt tgctcgccgt gtccgacgac aattcggcca      1860
     cctcagcagt gctggaatcg aagtacagct actgttactc cgtatattcg aggtgtattg      1920
     cccagcttcg ggagaaaatt gcctcccaat ccacgcaggc ttccgtcaat gtccacacgc      1980
     ccgcgtctac aggctgtcgg ttacctccag tggataccga ggtctttgcg ggtgattacc      2040
     ttcggtggcc cacctttaga gacttgtttg cggccattta tatccaaaac tcgcggctca      2100
     ccccggtaga gaagttgttt cacttgctgt ccaaaacaag tggtgacgct cacgccattg      2160
     ttgctaaggc tccgcttacc catgaggggt ttgtcgcagc gtggcaaagc ctcacagacc      2220
     gttttgagaa tcggcggctg ttagtcaata gccagttgaa gatccttttc aacctccagg      2280
     ctatttctca agagtccggg gtcgcgctga gggaactgca agccaccatt cagagttgtc      2340
     tgacagccct agaaatgtcc gccatcaatg ttgaggcktg ggattgtctc ctggtcttta      2400
     tgatttcctc gaagctcccc aaggtcacac tttctatgtg ggagcaatcc gtacataata      2460
     aggccgaaat tccaacatgg aaggagttag ataacttcct gacagagcgc catcgcactc      2520
     tggaggccat cgacgacgtc aggcctagtg gctccgggca atctccgcca aggtcgggac      2580
     ttcctgctgc ccctgcacgg aggctcaatt cgtacgagac tcgagtggct ccgggccaaa      2640
     agggatgcga tctctgttcg agggagaacc accctatccg cttatgtccg cgtttcctag      2700
     aaatgaacgt ggacgggcgc tccgactaca ttaagaggaa gcagttatgc ttgaactgtt      2760
     ttgcccgagg gcaccagcag cgagactgca cgagcgccca tacctgcttc acatgccaca      2820
     gccgacacca caccctcctg caccgcggca atccgttcgc taccgctcca agtccgccta      2880
     ctccagcaag ggctcgaccc gcacaaactg ccagaagcac aaacggctca gaggatcagt      2940
     cggatgtgca ggtgtgcttc gcctccgggt ctggagccgt cctactgggc actgccctta      3000
     tcaacgtgtg ccatctgggg tgcagtttcc aggcacgagc actgatagac tcagggtccg      3060
     aagcgacgtt cataactgaa cgactgttca accttgtcaa gcttcccttc aagactattc      3120
     aagcccaagt gtccggtctt aatcagacca tttccgcgca gtctactaaa ttgtgccatt      3180
     tctccattcg gtcgccgtct agacccgggt tgcaattaga gactgcggct tacgttcttc      3240
     ctcagttggc aggaaatctg ccatcatatc cgattccgcg ggatcgtctc aaggggctgc      3300
     ccgacattcc cctggcggac cccaacttct ttgaaagctc ccaagtcgat gtgttaatag      3360
     gagctgacat tcttccgtcc attctcctcg gtaataccag ggctaacatc tgcgggtcac      3420
     ttctcggtca ggaaaccatt tttggatggg tgctgacagg cccattatct ccagccaacc      3480
     ctcgcagcgt gtccgttttt tccacacgag ttgcccgtag cctcggtgac tcgctggatc      3540
     agctcctcac caaattttgg gaggtggagg atgtgcccac acagatcaat tcggaatcgg      3600
     attcagtttg cgagcacaat tttgtccaga cgacgagaag agacgagtgt ggcaagtacg      3660
     ttgtgacgct ccccttacgc gaccccgagc agaagggttc cgagctatcg gcttcacggt      3720
     cctttgctct tgctcagttc ctgcgtaatg agcagcgcct gaagagggat ccgcccctta      3780
     aggcccgcta tgactcggta atccaggaat acatcgactt aggccacatg accgaggtct      3840
     ctcccacgag cagttccgct acctactacc tcccacatca tgccgtcttc aagcccgaaa      3900
     gcacgaccac caaggtgcgg gtagtcttca atgcttcgag cccgtccgca aacgggacca      3960
     gtctgaacga cattctttac gcgggcccgg tcttacaatc cgacctgacg attcaaatcc      4020
     taaagtggcg atactttagg tttgtcttca acgccgacat cgagaagatg tatcggcaaa      4080
     tttggataga ccccaagcat actccgctcc aacgtatttt gtttcgcaat cccgatgggg      4140
     agatccgcga ctacgaatta aaaacggtca ccttcggtgt caattgtgcc ccgttcctag      4200
     cgatccgtgt cctgcagcag ctcgctgacg acgaagagtt gaagtacccg caggcaagcc      4260
     aaattatccg gcattttatg tacgttgatg acgttctcgc gggggcagac tccaaaaccg      4320
     aagcccaagt ggtgattcgg gagctaaagg gcgccctaga gtcggcaggg tttccactga      4380
     ggaaatggac gtcgaatagc aaggcgatcc tggccgacat tccgagcgac cacctccttc      4440
     gtgctgattt cctcgacatc gatgcagaga gcacggccaa gacactcggc gtgcgctgga      4500
     aagcgacgag cgatgagttt tttttgttcc gccagagttg acttccggct cgtccttcac      4560
     gaagcgccaa gtcctctccc aaattgccaa attgttcgat ccagcaggtt ggctcgctcc      4620
     tttcattgtc cgggcaaaaa tgttcatgca ggacatttgg cttctggatc tggggtggga      4680
     cgacgccctc cctcaagatt tctgtcagcg atgggttgac ttcctgaaga attactcggt      4740
     gctcgatcag attcgtgttc ctcgatgggt cgcgttccga ccacacctaa gggtcgagca      4800
     tcacgggttc tgcgacgctt cagagaaggc gtacggcgca gcaatttacg tccgtgtcga      4860
     ggttgggtct acggtcatag tgaacctgct gactgcaaag actcgagtgg ccccagttaa      4920
     aacggtgtcg ctccctcggc tagagctgtg cggcgccttg ttgctgtcgg aaatggccac      4980
     cgccgttctg ccaaagatgc cagggcccgc atctgcccca tactgttgga cggactcgac      5040
     tattgtcctc gcgtggctgc agaagccagc gtgtcagtgg acaacgttcg tggccaaccg      5100
     ggtagccaag atcgcccagt tcaccgacgt gcagaaatgg gcacatgtcc gctccgagca      5160
     gaaccctgcg gacctcgcca gccggggcgt agctctccaa gaccttgcgg ataaccagtt      5220
     gtggtggcac gggcctggct ggctgcgagg gcctcgcagc gagtggccca ctcaaggcaa      5280
     cgaggccccc gtgactgaac tcgagaagcg agcagtcaag gtccatgtcg cgaaggcgcc      5340
     ccccgaagat ctccttgaac gtttctccac acttgacaag gcactacgag tccttgccta      5400
     tgtttgtcgc ttcatccagc gcgcgcggaa gatacgctct ccgttcgaag agcacctgac      5460
     agctaatgag attacgtcgg ctgaacgtct tctagtttcc gtcactcagc gcagacactt      5520
     cgtctctgaa atgggctgct taagcgaaaa gcgtccagta tcagcgtcca gtccgattca      5580
     aaatctgaac cccttcatgg attcgcaagg ccttatgaga gcctgcggcc gggtcacgtc      5640
     ctctgaactt ctccaatacg acgaacggca tccgataatc cttccatacg actgccatct      5700
     gtctcgactc cttgttcaat ttacgcatcg catcacgctg cacggtggca atcagctgat      5760
     gatccgcctg attcgggcca aattctggat tccaagggtg aggaatttgg tcaagtccgt      5820
     cgtctatgct tgtaaggtat gtgtcatcca caagaagaag ttgcagacgc aactcatggg      5880
     agagctaccg aaggaacgga cgtccttctc gcgcccattc acgtacacag gtgtggatta      5940
     tgccggtcct ttcgagataa agaactatac ggggcgagcc tgcctcatca caaaggggta      6000
     tgtgttggtg tttgtgtgct tctccactaa ggccatccat ttagagccta cgtcggacct      6060
     tacgaccgag aaatttctgg ctgctttcgc tcggttcgtg tcccggagag gatgcccccg      6120
     tcaagtgcag tcggacaacg ggaagacctt tgtgggggca gctgccctac tatctcgcga      6180
     ttttctccag agcctaaaag gggctgtgac aggtgcctac agtcaccagc agcttctctg      6240
     gcatttcatt cctccgggag ccccccacat ggggggcctg tgggaggcag gcgtcaagag      6300
     cttcaagacc ttgttctaca agtccaccgc cacacggaaa tacacctttg aggagctggc      6360
     tactctcctg gcgaggatcg aggcgtgcct aaattcgcgg ccgctcgcgc caatgtccga      6420
     agaccctgct gatctgatgg ctcttacacc cgggcacttt ctggtgggag gtcctcttct      6480
     cgtcacggtc gaacccgagc taaaggggga tactacgtca attattaatc gctggcagca      6540
     cctgaaggct cttcaacagc aatttcggct gcgatggaag gaagagtacc tcaaggagct      6600
     ccataagagg aacaagtggc gtgcccctac gaggaatctc cgcgtcgggg atatggtggt      6660
     catcaaggag gacaaccttc cgtccaatga gtggcgatta ggcaggattg acgcggtgta      6720
     tccaggatcc gatggccatg tccgcgtgat cgacatccgc accgcgcgag ggctcgtcaa      6780
     gcggcccgtc gctaaggtcg tccttcttcc gatggacgcg tccgcctgcc cacaataatt      6840
     atgcgtttct tccgttccaa tgtccctgtc cattgtgctg tctcgtagct ctgcccgtaa      6900
     ttccaaatcg aacttcacac caattctgat aacgctgttt tgtttcttca tcatagttcc      6960
     gccagtcata ttcagcacga tgtcgccacg tccacgcagc gcccagtcac tggagagcag      7020
     atgtactcga ggtacacagt cctaccgatg ccgagtctgc agagggatcc atcctttgaa      7080
     gcaatgtcgg cgctttctac gtctcagcgc cgagaagcgg ctccgggcgg ttctcgtgaa      7140
     ccggtattgc tccaactgcc tggctcacga gcactccgac ggatcgtgcc ggcgtgggga      7200
     ctgctgtaga acgtgtggtc aggatcacca ctcgctgctg cacctcgtgg agaagccgcg      7260
     ggctcggcgc cagccgcgtc aagaggagca ccgttcacgg agcgcgggag acagtacacg      7320
     gagtgtctca gctggcgctc agccgtcgtc cgtcaactcc cggcgcggtt cggttgcttc      7380
     tcggccggac tcacaagccg gtccacggcc atcgacttcc cggcgctcgt cggcagctcc      7440
     tcagcattct tccgccactg gccggcaagc ttcaggtgct ccacggcctt cgtccgccac      7500
     tcatcgggtg ccgtccaccg ctcgtccgac cgcgtcattc gcgcctaggc aactttccgc      7560
     ctctcgccaa gggaccccgc aggacgcagc cgctgcgccc accctatcgt cgctgctgca      7620
     gaggaacagc gtcaacgttc tgccgaccgc gctagtgcgc attgacaccg ggacccggat      7680
     cttcaacacg ggggccctta tcgacccgtg tacgccctcg agctgcatcg acgcatcgct      7740
     agcggcgtgc ttccgtctgc ccactaccag cgtgggggac gaacaagttt gttcggccac      7800
     cgtgggttcc aaaacggatg atagcgttcg gctggaggtc gttttcaaaa tcgagcctca      7860
     cgtgcgcgtt cgtacgccgt ctcgagagct gagcgaggcg gtgcgtgccc acttccgagg      7920
     cgtgacattg gcggatgagc ggttctatct gccagcgacg atctccgttg tcctgggcgc      7980
     ggatatgtac ccgcgtatca tacagccggg gttcctgaag atccaggacg ggctgccggt      8040
     ggcccagagc accgtttttg gatgggtcgt gtccggagcc tgtcaccaac cgtagcgacg      8100
     agggagctgt tgcaacccga gtgattgcaa ggggggcggg a                          8141
//
ID   BEL-1_Deu-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   10-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_Deu_;
KW   BEL-1_Deu-LTR; BEL-1_Deu-I.
XX
NM   BEL-1_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-323
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
SQ   Sequence 323 BP; 71 A; 103 C; 79 G; 70 T; 0 other;
     tgttcaggtg aggggccatt gtgccgccga agaagagcgc gtgaagagcg catccgcgct        60
     gaagagcgca tccacgctaa agagcgcatc cgcgctgaag agcgcatccg ccctcgcccc       120
     tctctgcaca atcttgcact ctcgctctct cgggtccaac tgcagcggtc ggccgtcggc       180
     gatcgtcttt ttcttatgct aagttaagtt aagtcagttt tcttgtatga agtgaataaa       240
     gcagacgggc gattccacga ctcccccgac ttccaccacc atcaagaggc atctttttcc       300
     ggcaacaccg ccccactaca aca                                               323
//
ID   BEL-1_DFi-I repbase;    DNA;    INV; 5616 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DFi_;
KW   BEL-1_DFi-LTR; BEL-1_DFi-I.
XX
NM   BEL-1_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5616
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 877-877 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4642-5223] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           697..1641
FT                 /product="BEL-1_DFi-I_1p"
FT                 /translation="MLESNPPALPQSKLPRLPLPTFDGTHTEYKNFMTSFM
FT                 QLTGRENLSSIEKFNHLLNCLKGPALEAVKAFPVTSENFPKALDKLKARYD
FT                 KPALIFMETITTIFKLQPVNSSNAQQLRSLIDNASALFSSLSSLGSDAQIS
FT                 EAMLIYLVMDKCDQQTRNKWNESLDYSSLPSWTRCASVLERHCQFLVSSGS
FT                 SSTQLRRPVQTNQYRVQSTTLQRIICTHQDHMRLLLQRWTQTHGMRPVSEF
FT                 GFTATPRSGENSLCVNCLGKGHKVSNCPSKNRCRSCNQPHHTLLHHHNSPR
FT                 RYHYNLRQARPSPAEQQLILNHD"
FT   CDS           3718..5577
FT                 /product="BEL-1_DFi-I_2p"
FT                 /translation="MLQDKPYTSYFWSDSQIVLHWLQEHSVTLSTFVGNRV
FT                 SEIQDSTSTGEWRYVPTSLNPADIVSRGATTHELQASIWFSGPPFLSQHMS
FT                 DWPQPPKLRNLDQEVVNSEKRKSTFTAVVRSNHLLERMESISSYTRCLRVI
FT                 AWMFRFYRLTSKTNNTKAAGLTSEELQHASNCIIWNLQQQSFSMEFPLLQK
FT                 SRPLKGQLKFLNPFIESSSGFQLIRVGGRLENANISESEKHPILLPKKSHI
FT                 SWIYVRHLHLRNFHAGPKALVALSRLEFWIVNVRDLARRVVRSCVSCVRYK
FT                 PKLQEQLMGSLPVERLSPQQPFSKCGVDFCGPINTYLRIRGKGPVKSYLAI
FT                 FVCMASKAVHIEVVSELSTKAFLAALKRMIARRALPTDIYCDNATNFAGAS
FT                 NHLQELKKFIFDRNTQDAIESFCSSDFINFHFIPPRAPHFGGLWEAAVKSA
FT                 KGLLNRTLMNTRLTFEELTTVAAEVEAILNSRPLTPLSPDPSDFGAITPGH
FT                 LLVGKPLRALPERHVNTANITNLQRFDVVTAIKQEFWRRWSAEYINELRAR
FT                 TKWSQPSTNVTVGSLVIIHDDNRPPQHWKLGRIDSVVVGKDGLVRVAHVRT
FT                 PNGYCSRPIHKLALIPTSDLKD"
XX
SQ   Sequence 5616 BP; 1531 A; 1478 C; 1207 G; 1397 T; 3 other;
     ttttggcgcc caacgtgggg cagtgtgtta aataaacatt taaataaact aataaactta        60
     taaattaaac gtgccaaaag tctcaccgtt ctcgcgcgtt ccgtatgcac acagctgcac       120
     acatacgcat acgawcacaa gtgcgggcag tcaagtgtcg ctaacaaacg ggacaattct       180
     tcgatttcgc tttgcgcttg aaattccgct ccacacttaa accgaaattg aaagggaatc       240
     gttgcttgca gttctttcgt tttcgctaat ttctgcaact gtgtagccgc ttgtcgctca       300
     acaaatttgt cgctttcgga atctaacggc aagtcttcgc gctacaccgg ttcagaactt       360
     tgatacgctt caaccttaac ctaactgcaa aataatggtt cctagtgtaa gccaacttga       420
     cgaggccaag cgtcaaaggg ccaatgtcaa acgaaacatt tcgcgaatta aatcagtggt       480
     tgacgaacat gttgaagagg agtctttcaa ccgctctgcc gctgaactcc aatgccgtct       540
     gggaattttg gaatcctact tcaaacaggc gctagtgatt caaactaaaa ttgaaactct       600
     ggattcagcg gacaacgggc gtgttgacat tgaggagcat acatagcgac caaattggct       660
     atcaaacaac tactcggtga agatctaagc agcacaatgc tcgaatccaa tccaccggca       720
     ctgccgcagt caaagctccc aaggctgccg ctgccaactt ttgatggtac tcacacggag       780
     tataaaaact tcatgacttc gtttatgcag cttactggac gtgagaattt gtcatcaatc       840
     gagaaattca accatcttct caactgtttg aagggcccag cactggaagc agtaaaggcg       900
     tttccagtga ccagcgaaaa ctttcccaag gctttggata agttgaaggc tcgatacgac       960
     aagccagcgc taatatttat ggaaacaata accacaatct ttaaattgca gcctgttaac      1020
     tcttcgaatg cacaacaatt gcgaagcttg atcgataatg catccgccct attcagctct      1080
     ctgtcgtcgc tgggctcgga tgcacaaatt tcggaggcaa tgctgatcta cctggttatg      1140
     gacaagtgcg atcaacaaac tcggaataaa tggaatgaat ccctggacta ctcttcgttg      1200
     ccatcctgga cccggtgcgc tagtgtgctc gaacgccact gccaatttct agtatccagt      1260
     ggatcttcct caactcaact tcgaaggcct gtccagacaa accaatatcg ggtgcaatca      1320
     acaacgctcc aacgtatcat ttgcactcac caagaccaca tgcgtctttt gctccagcgc      1380
     tggacacaga ctcatggcat gcgaccagtt tcggaatttg gattcactgc aacgcctaga      1440
     agtggtgaaa acagcctttg cgtcaattgt cttggcaagg gacataaggt gtcaaattgc      1500
     ccgtcgaaaa atcgctgtcg aagttgcaat cagccgcatc atacgctctt gcatcaccac      1560
     aactctccga ggcgttatca ttacaacctt cgacaagctc gtcccagccc agcggaacag      1620
     cagcttattc tcaaccacga ttgagcgcag caccaaacta cgttaatgtg cagccgtatc      1680
     ctatcggagc tgcaacccat gcgcacgctc aatcagatgc aagaggggga tcacaagtca      1740
     tcctagccac agcaatggtg caagttcagg actcaattgg ctccttcaga ctcgggagag      1800
     cgcttctcga ctcctgctcc caggtcaatt ttataaccga ggcttttgct caaaaactca      1860
     ggttgccgag ggacaagcat agtgttcaaa ttcgcagtat cggcgactcg aacacgcaca      1920
     tcaaacaccg tacatcaaca acaatcaaat ctcgtctttc gcctttcgaa ttgcctctcg      1980
     atctctgcat aacgcctaac attgcatatc aaccggatac ccaaattgac atctcgaact      2040
     ggaaccttcc acccaacacg ccgttagcgg acgaacgatt tcatctttcc cgaaacgtcg      2100
     acatgctgct aggtgcagag gcattctacg atattcttag cagtgggcca agtcaaactg      2160
     ggctccaatt tgccgactct ccaaaagaca ctattcggtt gggtggtatc gggaagccat      2220
     cgcccaaaac aatcaaagga gtcctacgca tatctggctc aaagctctgc agccattgac      2280
     gcaaatctta agcgtctgtg ggaggtgaaa caatcggcac ctcggctgaa cgacttaagc      2340
     cagaacatca gttatgtgag ccacacttca agcagtcaac tcgcttagaa gcaaacggaa      2400
     ggatcgtcgt taagttgcca ttcaaggatg cccctactca gcttggcaat tcggttgaca      2460
     ttgctcgtcg aagatttctc aacgtcgaac ggcgacttgt acgttcaccg gaagtctacg      2520
     cccaatatag gacgttcatg aacgaatatg aacaaatggg tcacatggag ctagtggcaa      2580
     atcccaattt atcggcccct cactactaca ttcctcacca ctgtgtgata aagccagcca      2640
     gtgaatccac aaagcttcga gttgtattcg atgcgtcctg caaaacgtca agtcaagttc      2700
     cttgaatgac atcttacttt gcggtcccac gattcaagat gatctcttca tgctactgct      2760
     acgttttaga ctwtcaagat acgccctgac agccgacata gcgaagatgt acaggcaagt      2820
     aaatgttgat attagtgacc gcaaatttca gtacattctc tggcgagatt ttccaggcga      2880
     tcaactacgc acatatcagc ttaatacgat cacttacgga acggcttccg caccatatct      2940
     cgccgtacga agcctacacc gtttagcgga tcttcatggc gctgaatttc ccactggtgc      3000
     tgccgttata aggacttcgt tctatgtcga cgatttaata acggtgcagg cggaataccc      3060
     gactctggcg gtcataaagg accaagttac cgattctaga acgcggtcag tttccgctta      3120
     ccaaatggca ctcaaatcac atggagttcg tcgagagtcg caacaacaag gatctcaatc      3180
     catgcacaaa cgctatgacg agtgcacttg gagtccagtg ggatcagact ccgatgtcct      3240
     acgatttgca tttacgctca aaaccgtgcc ttcagcaatc acaaaacgtg cgattctatc      3300
     tgttgcgtct gcactatacg acccacttgg attgctgtca ccgctaatta tcgtcgccga      3360
     gatcwttcta caggaactct ggctagcggg attgagttgg gatgaatcgg taccgcaaca      3420
     cttgcaaatc gcttggagca agtgcttgga atcctttaga acctgttcaa accttccggt      3480
     gccacgctat tgtctacaag ctcgatacct atcagttcag attcacggat tctgtgacgc      3540
     gtcaatccga gcatatggtt gcgccattta tctacgtacg aatgcatcga cggaaccatc      3600
     gctgttcaac tgtttacttc taagtccaga gtggccccgg taaaaaggaa gtctctccca      3660
     aaattggaat tgtgcggagc gcacttgctg gcgcagttgt atactaaggt cctcccgatg      3720
     ctacaggaca agccgtatac ctcatacttt tggtcggatt cccagatcgt actgcattgg      3780
     ctacaggagc attctgttac actatcgaca tttgtaggaa atcgagtatc cgaaatacaa      3840
     gattcgacat cgactggaga atggagatat gtacccacat cgctcaaccc agctgatatt      3900
     gtgtccagag gagctacaac acacgaactc caagcttcaa tatggttttc tggaccgccc      3960
     tttctatcgc aacatatgtc agactggcct cagcctccca agctgaggaa tcttgaccag      4020
     gaagtagtta attcagagaa gcgaaaaagc acattcacag ccgttgtgag gtcaaaccat      4080
     ttacttgaaa ggatggaatc aatcagctcg tatactcggt gtctacgcgt aatcgcatgg      4140
     atgttccgct tctatcgtct cacaagcaaa acgaataaca ccaaagcggc tggattgaca      4200
     tcggaggaac tacaacatgc atccaactgc atcatatgga atctccaaca gcaatcgttt      4260
     tcaatggaat ttccgctgct acaaaaatct cgaccgctga aaggacagct gaaatttctc      4320
     aaccctttca ttgaatcttc ctcaggtttc cagctcatca gagtcggcgg caggctcgaa      4380
     aacgccaaca tctcagaaag tgagaagcac ccgattcttt tgcctaagaa atcgcatatc      4440
     tcctggattt atgttcgaca tcttcatcta cgaaactttc acgctggacc gaaagctttg      4500
     gtggcgctca gtcgtttgga attctggata gtcaatgtca gagacttagc ccggcgagtc      4560
     gttcgatcct gcgtgtcttg tgttcgctat aaaccgaaac tacaagagca actgatggga      4620
     tcactgcctg tggagcgcct ttcgccacaa caaccctttt ccaagtgcgg cgtcgacttt      4680
     tgcggtccaa tcaacactta tcttcgcatc cgtggaaagg gtcctgtgaa gtcttacttg      4740
     gcaatcttcg tctgtatggc atcaaaggct gtacacatag aagtcgtttc agaactatcg      4800
     actaaggcgt ttctcgctgc actcaaacga atgattgctc gacgcgcatt gcccacggac      4860
     atttattgtg acaatgccac aaattttgca ggcgcttcta accatcttca agaactcaag      4920
     aaattcatct ttgaccgcaa cacgcaagat gcaattgaat ccttttgttc ttctgatttt      4980
     attaattttc actttatccc ccctagagcc ccacatttcg gcggactttg ggaagcggca      5040
     gtaaaaagtg caaaaggact gctgaacaga actcttatga atacgcggct cacctttgaa      5100
     gagctcacca ccgtggcagc tgaagtcgag gccatactca actcacgccc cttaacccca      5160
     ttatcgcctg atccgagtga ttttggagcg atcactccgg gtcacctcct ggttggaaag      5220
     ccgttgcgtg ccttgccgga acgccacgtc aacacagcca acatcaccaa tcttcagcgc      5280
     tttgacgtcg tgacggccat caagcaagag ttttggcgcc gttggtcagc ggaatacatc      5340
     aacgaactgc gagcccgcac taaatggtca caaccttcaa caaacgtcac cgttggatct      5400
     ttagtcatca tccacgacga caatcgtcct ccacagcatt ggaaactcgg ccgtattgac      5460
     tccgttgtag tcggaaagga cggtctcgtc agagttgctc atgtcagaac acctaacggc      5520
     tactgctctc gaccaataca caagttggca ttaatcccta catctgacct gaaggactga      5580
     gaattttgaa agtggatcct ttcaagggtg ccggga                                5616
//
ID   BEL-1_DFi-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DFi_;
KW   BEL-1_DFi-LTR; BEL-1_DFi-I.
XX
NM   BEL-1_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-256
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 878-878 (2012).
XX
RN   [2]
RP   1-256
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 256 BP; 73 A; 57 C; 43 G; 83 T; 0 other;
     tgttcggtca aactttgtta ttcccttagt attttcttgt atacatatca gagactgtta        60
     actttctggt atttattatg ttacgatagt catgttatgc tagctgcact ttgcgcagca       120
     gaataaacga tcagtacgaa tgaaatagcg aaacgaagaa cactctcttt aatcggtaca       180
     gacttttcac gccccatttt tcacaccgcc cagatcctag tttcatgtca ccacaaaaac       240
     gcttgtggat gcaaca                                                       256
//
ID   BEL-1_DGri-I repbase;    DNA;    INV; 7281 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DGri_;
KW   BEL-1_DGri-LTR; BEL-1_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7281
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1283-1283 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4767-5246] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           857..1882
FT                 /product="BEL-1_DGri-I_1p"
FT                 /translation="MLERGHRYELSDLPSTSTQEYPRQEAPKVDIPHFNGN
FT                 AKEWPSFFGLFTEIIHDREDISDTIKLNHLRSCLKGEASTMVSHLLIGSAA
FT                 NYQKAWNLMCKRYENNRKIFADRLNTLLELEPLRCDSEERIRKFLDVATES
FT                 IYIIKEKSKIGNSADVIFAQILLRRFSTEALQQYEQHVKTKNRDIQSLEDV
FT                 QEFINQLYHAVDSVQKNVVKETTHRQQRTCRFCAISGHDINRCQKFKAANL
FT                 NKRKEFVKMQHLCFRCLGTHAMAECRKDWRCQQCNKHHNTLLHEETKNESV
FT                 NWLKQNKGQGTLLATAVVNIRSANGNYEQLRALMDGGSQRTLISEEAAQL"
FT   CDS           2658..4409
FT                 /product="BEL-1_DGri-I_3p"
FT                 /translation="MEKKFKNYQMLYQEYNNFMKEYLQLGHMVPVNTTGKG
FT                 KYYLPHQAVIKQDSLTTKLRVVFDASAKATCGRSLNDAMSIGPKIQRDIFD
FT                 ILSSWRMWRYVMTADVEKMYRQIKITPIDQEYQYIVWRENQKESIKEFKLT
FT                 TVTYGTSAAPYLAVRSLHHLADLYCKDDEKLTHIIKKDFYMDDLMTGANTI
FT                 EDCTAIQQKIRAVLNKGGMHLRKWVSNDKKIIASITNTNKSEKIAITKDET
FT                 IKTLGLLWDPARDDFTFSVKVPHLGHISKRSVLSQLARIFDPLGWLTPVTL
FT                 QGKCFMQELWKMSFKWDAELEKGLADIWRNFANELPALTSIRIPRWIGSKG
FT                 LTAIELHGFCDASEKAYAAVVYAKIGSQVTLLASRSKVNPLKNKKTIPKLE
FT                 LCAAQLLAKLLFRISSTMNCRGQINAWSDSQITIAWITNKRSKDKFVKTRV
FT                 DDITSHLPSVKWNYVKSEENPADVASRGITPKKLEHHSTWWHGPQWLTQPA
FT                 SEWPIQKEEEILIVAATLNEDDPLTKLLSKYSSLSKLESVIVNILRFIAKL
FT                 RAKITQTSSADNNLWSKAKSTIVKLQQQLDFGKEIHQ"
FT   CDS           6451..7449
FT                 /product="BEL-1_DGri-I_2p"
FT                 /translation="MDLNQGRLNPILIKPSQMMKEINKVQDVMPRNHILPG
FT                 KTAGHKLQTAYKLLAAHGIFKDEMIIIKAKIPLYLNQESAIFKIIPIPFIG
FT                 NSQKMIPAVAANYMIYNTALNTFHLMSDADLNKCRWENEETRVCQGNWAWK
FT                 DAEENFCETTPMRPHSKMLCSMDEYKEQSFWIKLGAHNRWLFKTFENTSGQ
FT                 IQCSDSHHQLVRLPKVGILDLTEGCSLRLKGVTLQAPQSLHTSFKVNFSTH
FT                 FIKEADDEAPFELTPIGTLTINNTKELQKLHEKIQYLNDHKVHLGDLHFFT
FT                 ASGHVSLILVTVVIIGLVVYLRIRYVQNRELINITFTAPPE"
XX
SQ   Sequence 7281 BP; 2588 A; 1437 C; 1585 G; 1667 T; 4 other;
     ttttggtcct tcgagccgga tccagagttc gaaactaatc gtcgaatctg gaaatacagt        60
     tttgcactat acgtaatctg tataaatttt ggtccttcga aaaccgtgtc cagagatcga       120
     aactaatcgt cgaatctgga aatacagttt tacactatac gtaatctgta taaattgaat       180
     ttcgcgccgc gttcagagtt cgaatttgct cgtcgaatct aaaaatattt ttagcgattt       240
     ataaaaaaca actgaaaaaa gtgattacga tgtcggacaa gcaaatcgaa ctactgaagg       300
     ctcaagccaa actcagggag caagtgcaaa aaatgatcaa ccaaagtgca agcccgacct       360
     cgttcgagaa gattttagcc gagtttcggt taaataactc gaagctagtg aacatcggac       420
     ggatcgacca cgaatatttc aataagaaaa tattcgagtc aactatggct gaagtcgcat       480
     tatacaaaag taaggagacg caagtgaaac ctaaggagaa gatggtttta actacaacgg       540
     aaccctcaac atcgcagaaa gctatggagg aggaaatgtt gaagtcatcc aacgaggagg       600
     cttatcaaac ggatcgttcg gcgaggccaa aaaaccctat tttggagaaa ttagagatgc       660
     gcctagccgg tctacgggaa gaaatggaaa tcgcccaaga atggttggct aatccagcaa       720
     gaaaggagct gcaaaaaatt aagtatatgc tggacgtccg tatgaggacg attgagaaaa       780
     ttataaagac gttggaaatg gaagacaaat catggacatg ttcagatgac atcgatgagc       840
     taatgttcaa ggcggaatgc ttgaaagggg acatcgatat gaattgtcgg atctaccatc       900
     tacatcgaca caggagtatc ccaggcaaga agctccaaag gttgacatac ctcattttaa       960
     tggtaatgcc aaggaatggc caagcttttt tggcctattc accgaaataa tacatgatcg      1020
     agaagacatc agcgacacaa taaagctgaa tcacttaaga tcatgcctga aaggagaagc      1080
     atccacaatg gtaagccatt tactgattgg ctcagcagcg aactaccaaa aggcatggaa      1140
     tctgatgtgc aagcgctacg aaaataatag aaagattttc gctgaccggc tgaacacgtt      1200
     attggaattg gaaccattaa gatgcgattc agaggaaagg atccgcaaat tcctagatgt      1260
     agcaacggaa agtatctata tcataaagga aaaatcgaaa attggcaatt ccgcagatgt      1320
     tatcttcgcc caaatccttc ttcgacgatt ttcgacagag gctctgcagc agtacgagca      1380
     acatgttaaa acgaaaaaca gagacatcca atctttggag gacgtacagg agttcatcaa      1440
     tcagctatac catgcggtgg actctgtaca gaaaaacgtt gttaaagaga caacgcaccg      1500
     tcaacagaga acttgccgat tttgtgcgat aagcggccac gacataaaca gatgtcaaaa      1560
     atttaaagca gcgaatttaa acaaacgaaa ggagtttgta aaaatgcaac atttatgctt      1620
     ccgttgcttg gggactcatg ctatggcgga atgcagaaag gactggagat gccagcaatg      1680
     taacaagcac cacaatacct tgttacatga agaaacaaaa aatgagagtg tgaactggct      1740
     taaacaaaat aaaggacagg gaacactgtt ggccactgct gttgtcaaca taagaagtgc      1800
     caatggaaac tacgagcaac ttcgagcatt gatggatgga ggatcgcagc gcaccctgat      1860
     atcagaagaa gcagcgcagc tctaaggctg aagaaaaaca agcagaaagt ggaaatacag      1920
     ggaatagttt caaacggcgt ggaactggca aaacacagtg tgccacttga aataaaacct      1980
     cgattttcaa gtagtttcaa ggcgaaaact acagcgctag tacttcccaa gttacaaaga      2040
     gcactcccca gcaagaggat tgatatggat atcaatacag actggaagaa ttgcacttta      2100
     gctgatccaa actttaacat gcctagtaga gtagacatgg tcattggtgt ggacttattt      2160
     cccttaataa tgatgggtca agtcagaact attaatggag cgcttggaca aaaaacacga      2220
     ctcggatgga tagtttccgg aaatattgcc cgagcaacgc caaagaaaat catgacagcg      2280
     accacaactg tacacattga tgatctggag cgcttctggg aactagaaaa ataagaaccg      2340
     atgtaacaag aaaatctgca ttgtgaaaat tattaccaac aaactacatc aatagataag      2400
     gatggacgac taatagtctc aattccattt catagcacca ttgaattggg agactctcgt      2460
     aagcaagcag tagcaagact actgcaaatg gagaaaaaat ttaaaaatta ccaaatgctc      2520
     taccaggaat acaacaactt catgaaagag tacctgcagc tcgggcatat ggtgccagta      2580
     aacacaacag gcaaaggcaa atactatctg ccgcaccagg cggtgataaa gcaagacagc      2640
     ctaaccacaa aattgagggt tgtttttgat gcatcagcaa aagccacatg tggtcgtagc      2700
     ctgaacgacg caatgtcaat cggtcccaaa attcaaaggg acatttttga cattctatcc      2760
     agctggcgca tgtggcgata tgtgatgaca gcagatgtgg aaaaaatgta tcgtcaaatc      2820
     aaaataacgc caattgatca ggagtatcaa tatatagttt ggagagaaaa tcagaaggag      2880
     tcaatcaaag agtttaaatt gacgaccgta acgtatggga catcagccgc accatatcta      2940
     gcagtgcgtt cattgcatca tctggctgac ttgtactgca aagatgatga aaagctaacg      3000
     cacattataa aaaaggattt ctacatggat gatttaatga ctggagccaa cacgatagaa      3060
     gactgcactg cgatccaaca gaaaataaga gctgtcttga acaaaggagg aatgcatcta      3120
     cgcaaatggg tctccaacga taagaagata attgcatcca taacaaacac aaataagtcg      3180
     gaaaaaatcg caataacaaa ggacgagaca ataaaaacat tgggattgct ttgggaccca      3240
     gccagagacg attttacatt cagcgtaaaa gtgccgcact tgggtcatat ttcaaagcgt      3300
     tcggtgcttt ctcaactagc aaggatattt gacccattag gatggctaac tccggtaaca      3360
     ttacaaggaa aatgtttcat gcaggaacta tggaaaatgt ccttcaagtg ggacgcagaa      3420
     ctggaaaagg gcttggcaga catttggcgc aactttgcaa atgaactacc agccttaaca      3480
     agtatacgga ttccgcggtg gattggaagc aagggtctca cagccattga gcttcatgga      3540
     ttttgtgacg cctcagagaa agcatatgct gccgtagtat acgcaaaaat aggtagccaa      3600
     gtcaccttgc ttgcttcaag gagcaaggta aatccattaa aaaacaagaa aaccatcccg      3660
     aagttagagc tatgtgcagc tcaacttctg gcaaaactat tgtttcgaat ctcatccacc      3720
     atgaactgcc gaggtcaaat caacgcatgg agcgactcgc aaattacaat tgcatggatc      3780
     acaaataagc gcagtaagga caaatttgtg aaaaccaggg tggatgacat tacgagccat      3840
     ctaccatcag taaaatggaa ctacgtgaag tcagaagaga atccggcaga cgtcgcttca      3900
     agaggaatca caccaaaaaa actggaacat cattcgacat ggtggcatgg gccacagtgg      3960
     ctaactcagc cagccagtga gtggccaata caaaaagaag aggagatctt gatagtggca      4020
     gcaacgttga atgaagacga tccactgaca aaattgctgt ctaaatattc gagtttgtcg      4080
     aaattggaaa gcgtaatcgt taatatttta cgatttatag caaagcttcg ggcaaaaatc      4140
     acgcaaacat cgtccgcaga caacaacctt tggagtaagg caaaatcaac aattgtaaag      4200
     cttcagcagc aactagactt cggaaaagag attcatcaac wgcagaacaa aaaacgattg      4260
     gaggctaaaa acaagctact accactctat ccgtttctgg acgatgaagg aattctgaga      4320
     gttggaggtc gactacaaaa ctccgcctta ccattcggaa taaaacatcc catcatcata      4380
     ggaaaatccc atttggcttg gctactgatc gataaggccc acaaaatgac cctacacgga      4440
     ggaatcaagt taatgaaaaa cttcatacaa cgggaatact ggatatttgg ttgtcgcaac      4500
     ctgataagaa aacatttccg agcatgtgtc acatgcatta gatacagaca ggagtcaatt      4560
     aaccaaatca tgggaaacct gcccacttat agagtgatcg gagagtttcc attttatgca      4620
     acgggcatag actatgcggg accattccaa attagatgct caaaaggacg agggcaaaaa      4680
     gcttataagg gatacgtctg catcttcatt tgtatggcta caaaagcaat ccatttggag      4740
     ctggtcagcg acatgaccac ggataaattt ctggaaactc tacatcgatt ttttgcgaga      4800
     cggggcaaaa gcaaacacct gtactccgat aatggaacaa atttcgttgg agcagcaagg      4860
     aaactaaatg ttgatttaga agctgctatt ttgagcaata caaaattagc accaattttg      4920
     caaaaagatg gcataacctg gcattttatt cccccgggga gcccccacat gggtggattg      4980
     tgggaagctg gcgtgaaatc catgaaatat catttaaagc gtatacttgg aaacaatagc      5040
     tgcacctatg aggagtctct acgctgctat gtcgtataga ggcagtgctg aactcacggc      5100
     ctttaatctc aatggaaaat gagagcgaga cggacgatgt actcaccgct ggacatttcc      5160
     tagtgggtag gccacttata agcgcaccag aaaatatgga cgtgcatggg cagataggat      5220
     cgctagacag atggagatac attcagcgaa tgactgcaga attttggaaa aaatggaaag      5280
     aagactattt ggtgtcgctg caaaaaagaa caaaatggca aagcgacaaa gaaaacctta      5340
     aggagggtca agtggtactg atcaaacagg aaaatacaca tcccggaaaa tggccaatgg      5400
     gaaaaatcat aaaaaccgcc aaaggagaag acaataaagc cagagttgtc ataattaaaa      5460
     caagtaacgg cgagataaaa cggtcattta ataaaatttg tccgttacca acacaagagg      5520
     aagagcaaaa gacgctacac agaagcacac ggagcaacat gactgcagca accattttaa      5580
     gcctactaat gatgttccaa gtgacaactg gagtcattat ttccaatcaa aatagctcaa      5640
     aaatacatat aagggagcta gaaaacgaat cagcaatatt tctggaaaag attggaaaag      5700
     tggaagtaac atcatcaagc tgggacttcc tattctactt caatttacaa gcctattcgg      5760
     aggtctcacg gcaagctccc gcaatactgg aaaaagctaa aggattatgt cccaagttta      5820
     tggaatttga acaacagtgc ctmtcaatga cagcgagagt cggacgacaa ttggacgcaa      5880
     tagaagaaaa taataatctt ataatggaac cttcgtatca aagaaagaag cgatattgtg      5940
     agmctatctt tgtatgccct aacggatggt ttgatgtttc atcaaaagtt atatcaatkg      6000
     ttaacatgaa gaccttgaag acgaaccaag aaaacttaaa aggctatatg gagaatcaga      6060
     cttcagttat caacgcaaca gtcaacttag tgaaaacaac gacagaaaaa gtcaacgaaa      6120
     actttaatga tatgactatg agattgaatg atatcactga atcaatcaaa gtccaatatc      6180
     tatacaccgg gaggcaatta agttcttgct actcattctc caactgaagg attggaccga      6240
     cgaagcggaa tcaattcaag aaaaaataat tgatttgttc atggatttaa atcagggaag      6300
     attgaatcct atactaatca agccatctca aatgatgaag gagattaata aagtacagga      6360
     cgtaatgcca cgcaaccata tattacctgg gaaaactgct gggcataaac tacagacagc      6420
     ttacaaactt ctggcagcgc acggaatatt caaggatgag atgatcataa ttaaggctaa      6480
     aattccattg tacctgaatc aggagtcggc catttttaag attattccga taccgttcat      6540
     cggcaatagt caaaaaatga ttccggcggt agcagcgaac tatatgatct acaatacggc      6600
     gttaaacaca tttcatttaa tgtctgacgc cgacctgaac aagtgccgtt gggaaaacga      6660
     ggaaacaaga gtctgccaag gaaactgggc atggaaagat gcagaagaga acttctgtga      6720
     gacaactcca atgaggcctc actcaaaaat gttgtgctca atggatgaat acaaggagca      6780
     atccttttgg ataaaactgg gtgcccacaa tcgctggttg ttcaaaacgt ttgagaatac      6840
     ttcgggtcag atccaatgca gtgactcgca tcatcaacta gtacgactac cgaaggttgg      6900
     catcctggac ctcactgaag gatgttctct aagacttaaa ggagtaaccc tacaggcccc      6960
     tcagagtctt cacacatcat ttaaagttaa cttctcgaca cacttcataa aagaagcaga      7020
     tgatgaagcg cccttcgagt tgacaccaat tggcacgctt acaatcaaca ataccaagga      7080
     acttcagaaa ctgcatgaaa aaatacaata tctcaacgac cacaaagttc acttgggtga      7140
     cttgcatttc tttactgcaa gtggacacgt ctcattgatt ttagtgactg tggtgattat      7200
     aggtcttgta gtttacctaa gaataagata tgtacaaaat agagagttga tcaatattac      7260
     atttactgcg cccccggaga a                                                7281
//
ID   BEL-1_DGri-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DGri_;
KW   BEL-1_DGri-I; BEL-1_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-277
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1284-1284 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 277 BP; 82 A; 50 C; 64 G; 81 T; 0 other;
     tgttcaagta tgaacatgtg ttgctctggg tatcagctag cgggctcatg cagcacactc        60
     aaggttaggt acctgaggcc gggtcacgct attcttagaa tatcccaaaa gatagcgagg       120
     gatgaaatta cactgtggtc gtcttacaag cgactgcgtt agataaggaa acatatgtat       180
     ttagttttaa gatttttcaa taaaataagg tcttgctcgt cagagcaagg cagtctgaat       240
     ttacaactca agctcgcgag tgtatattat ttataca                                277
//
ID   BEL-1_DHyd-I repbase;    DNA;    INV; 2491 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-1_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-2491
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2404-2404 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..2489
FT                 /product="BEL-1_DHyd-I_1p"
FT                 /note="DUF1759, and retropepsin."
FT                 /translation="MLSAKTLELLKKQSEIYDKIRQSITNKDALPAIDRLA
FT                 AEFTANHLILVKIGVIDHQYFKEKIYDGTMENIRNYEESLMKVEVADHAID
FT                 TDETASIQPKTSKAQHRQQEIIFSQRTSSPMDVLVDLVDKRALKVRQHMQE
FT                 VYANLELSSQEEILDYEDKLIFLWNKVQSTLTDLEAKYEKFAFDIDEIDEL
FT                 ECNVSILTKKLNRRVAGLQNTQEDVPELPKVDLPHFNGSPKEWPTFFELFS
FT                 EVIHNRRDISDTRKLNYLKSCLKGEAKMVVGHLLIGSSANYNSAWKLICKR
FT                 YENTRKIFANAVNQLVDMELLKNNDEGSIRKFLDTATECIFIIKEKGQFGN
FT                 EADALIAQILLRRFSTEVLQLYEQHVKKAREIQSLDDVLEFIEQLYNSIDS
FT                 VQKSAAHTSREAKTTSHESCRFCQLTGHEITRCQEFRAEPVKKRKEFVFKN
FT                 SLCYKCLGSHSVKDCKKNWTCNQCTKAHNYLLHEDANNKETVSSNCLNENK
FT                 GQDTLLATALIQIRNKSGKYEQLRALIDGGSQKTLISEEAAQQLKLRRTKR
FT                 NVEVQGISQNIEILKNSVCLTIKPRFKSKFITTTQALVMPKLQRALPTKKI
FT                 DMDVNKDWSGCALADPRFNEPSRIDIVIGVDLLPLIMLGKVKKINKTLGQK
FT                 TELGWIVSGNISGLSTNKVISASTTMCLDVPENSGKHRKIGLLYRRRRRPR
FT                 IKKRNQRQPLLAVTFGPPQ"
XX
SQ   Sequence 2491 BP; 874 A; 526 C; 539 G; 552 T; 0 other;
     ttttttggac catcgagctg gatccacaag gctacgtttg tgatatgtac tcacattttt        60
     ggtccttcga gccggatcca caaggctacg tttgtgatgt gtacacattt tttggtcctt       120
     cgagtaaaat ctacaaggct acgtttgtga caaagtgtga aagtgaagtg aaaaattgtt       180
     taaatacctt tttggcttac caattcaagc tgtgagtaga ggcacagcac gatcaaccag       240
     gcgatcaaaa caaaaacacc tccaacgggt caagccaaag ggtaaattaa gttcaaattt       300
     tcacaaaaca aaaaaaaaaa aacacaatca aaatgctgtc ggcaaaaact ctggagttgc       360
     tcaaaaagca atcagagatc tatgacaaga tccggcagag catcacgaac aaggatgcgt       420
     taccagcaat tgatagattg gcagcagagt ttactgccaa tcatctaata ctggtcaaaa       480
     tcggtgtcat cgaccatcaa tattttaagg aaaaaatata tgatggcaca atggaaaaca       540
     tcaggaacta cgaggagtct ctgatgaaag tcgaagttgc cgaccacgcc atagacaccg       600
     acgaaacagc atccatccaa ccaaagacat ccaaggcaca acacaggcag caggaaataa       660
     tattttccca aagaacctcg agcccaatgg atgtgctggt tgaccttgtg gacaaacgag       720
     ctctaaaagt aaggcaacac atgcaagaag tgtatgccaa tctagagctc agcagccagg       780
     aagaaatcct tgactatgaa gacaagttga ttttcctgtg gaacaaagtc cagtcaacgc       840
     tcacggattt agaggcaaaa tacgaaaaat ttgccttcga catcgatgag atagatgagc       900
     tggaatgcaa tgtcagcata ctcacaaaaa aactaaacag aagagtagct ggcttgcaaa       960
     atacacaaga agacgttcca gagctaccga aagtggatct tcctcacttc aatggaagtc      1020
     ccaaagagtg gccgacgttc ttcgagttat tctctgaggt gattcacaac aggagagata      1080
     tcagcgacac aaggaagctg aattacctga agtcatgcct taagggagaa gccaaaatgg      1140
     tcgtaggcca tttattaatt ggctcgtctg ctaactacaa ctcggcttgg aaactaatat      1200
     gcaagcgcta cgaaaatacg cgcaaaatat ttgctaacgc cgtcaaccag ctagtggaca      1260
     tggaactgct gaagaacaat gatgaaggca gtatccgcaa gttcttggac acagcaacag      1320
     aatgcatttt cattatcaaa gaaaagggtc aatttggtaa tgaagctgac gctctaatcg      1380
     ctcaaattct gttgcgacga ttctctacgg aagtcctaca actttacgag caacacgtaa      1440
     aaaaggccag agaaattcag tccttggacg atgtactaga gtttattgag caactgtata      1500
     actcaataga ctcagtgcaa aaaagcgccg cccatacgtc aagggaagca aagacaacga      1560
     gccacgagag ttgccgtttt tgccaattga cgggacatga aataaccagg tgtcaggaat      1620
     ttagagctga gccggttaaa aaacgcaagg agtttgtatt caaaaactca ctttgctaca      1680
     aatgtctagg cagccacagc gttaaagatt gcaaaaagaa ttggacttgc aatcaatgca      1740
     ctaaagcgca caactatttg cttcacgaag atgcaaataa taaagagacc gtcagcagca      1800
     actgtctaaa tgaaaataaa ggacaagata cgttgctggc gacagcgctc atccagatta      1860
     gaaataagtc tggaaaatat gagcagctaa gagcccttat agatggaggc tcgcaaaaaa      1920
     ccctaatatc tgaagaagct gcacaacagt taaaactgcg ccgaactaaa cggaacgtgg      1980
     aagttcaagg aatttcgcaa aatatagaaa tccttaaaaa tagtgtttgc ttaacaatca      2040
     aaccccgatt taaaagcaaa ttcatcacca ctacgcaggc acttgttatg ccaaaacttc      2100
     agagagctct tccgaccaag aaaattgaca tggatgtcaa taaggattgg agtggctgcg      2160
     cgctagcaga cccacgtttt aacgagccca gtcgaattga cattgtcatt ggcgtggatt      2220
     tacttccctt aataatgttg ggaaaagtaa agaaaatcaa caaaactctg ggacaaaaga      2280
     ccgaacttgg atggattgtt tctggcaata tatctggatt atcaaccaac aaggtaatca      2340
     gcgcatcaac aacgatgtgc ctggacgtcc cagagaactc tgggaagcat cgaaaaattg      2400
     ggttgctata cagacggaga cgcaggccac ggattaagaa gcgaaaccag agacagccac      2460
     tgctagctgt cacatttggc cccccgcaga a                                     2491
//
ID   BEL-1_DHyd-LTR repbase;    DNA;    INV; 484 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-484
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2402-2402 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs. This family is seen in
CC   tandem in some loci.
XX
SQ   Sequence 484 BP; 163 A; 101 C; 91 G; 129 T; 0 other;
     tgttcaggca tgaacatact gtagtatatt taataacgta ttcataatac ccgaagcgat        60
     gtagagtatt ctacatataa atgcgtcata tgcctaacat atgatagtgt atactaaata       120
     cgcatatagt gacattgtcc ctacgcataa acatagagcg aacgcaaaga taagcaaatg       180
     taatatgatc agccacttat ggtcagacta cagcagcgcg ggagatgccg cgtacgcact       240
     gcctaaggtc tatgccgctt gcctaatgtt tatgccatat gcacttatat gcacttatat       300
     acaagctata tatatgaagc tacatatcgg agagcatagt atgttccccg cttggagctc       360
     cactcattac ataatgtact taggttaaga gacgaaatac gcatgagcca gggtataaga       420
     actcttgctc agacgaataa agatcattac acaactgaac accaccacag ttattgtagt       480
     caca                                                                    484
//
ID   BEL-1_DKi-I repbase;    DNA;    INV; 5435 BP.
XX
AC   .
XX
DT   24-JUL-2011 (Rel. 17.07, Created)
DT   24-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DKi_;
KW   BEL-1_DKi-LTR; BEL-1_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5435
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1301-1301 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4505-5059] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..1278
FT                 /product="BEL-1_DKi-I_1p"
FT                 /translation="MAPERDITLCKSCNKSRLTNGVQNWVQCDACKEWYHF
FT                 ACAGVDDSIARVRWTCDLCIHVDRSSSTSTRAAIQPNESENAAPNKDAAIL
FT                 SMEPNSNKPAETSFTQTSNNLMMAMLEETRESERKYIEQKYAILAQQQGMQ
FT                 ERPIQLFGPTASQLAARQILPADLPTFNGNPADWPIFISMYENSSSVAGFS
FT                 DAENMLRLQKSLKGKAYELVRDKLLLPALVPEVINTLKTFFGRPEQILDRL
FT                 IDKIRKITVHKDRLESLIDFAMAVRNACATMEACNLYAHLDNPMLLRELVD
FT                 KLPTQHKLSWALHPRSPSIPVVKSFSDWIYHLAEAASTVMPGQNSWSVNTH
FT                 TQAFAGEKTPSNE"
FT   CDS           1274..5434
FT                 /product="BEL-1_DKi-I_2p"
FT                 /translation="MSDSEDDQQQDAKPNPACVTCNSTEHYAAQCEKFLKS
FT                 TVPERRRRISDAKACYRCLKTHRRKCFSKRDCGVDNCQSKHHPLLHRDAPR
FT                 PELVSAHHKEADFEEQYFRILPVTLYGNGVRINTYAFLDEGSSVTLIDEGI
FT                 LKHLKVCTSPEPLCLQWTGNTTRTEETSFKARMQISEMGSGRKLWLNNVHS
FT                 VKHLALPKQTVDVNKLVGRYNHLHGLPIKSYYNAEPMLLIGANNWTLAVPR
FT                 KIREGRRNEPIASKCTLGWSIQGTSNANRNYSFHHCVCNWNDIEKAVRESF
FT                 NADPIAPRELFSKDDEKAKGILEETCKKVNGRYQIGLLWRDKNLILPESYS
FT                 TALKRLECLRQKINKNPELFDQIQNQIDNLVVKNYAIELQPADIAEDTNRV
FT                 WYLPIFIALNPNKPNKIRLVWDAAAKSHGKSLNDFMLNGPDYLNSLTEVLM
FT                 AFRVGRIGVCADIAEMFHQIIIQQSDMHVQRFLWLHKDNKTPRIFVMRAMT
FT                 FGICCAPCIAHYVRDKNAQEFKDQCPRAFESITEAHYVDDLIDSYTDDSEA
FT                 IAVTTKVRDIHAEGGFAIRNWISNSTAILKHFGERQIDEQNPKELGDPEKV
FT                 LGMYWEPSNDVFKYTFRFARLKRDVLNGETVPTKREALQVLMSIFDPLGLL
FT                 SCYTIGLKMLLQKVWRAGIDWDEELPDTLLGSWRQWKTVLLQAAKSEFPRF
FT                 YSTLLPNADQIDLHTFVDASEYAYAAVAYLRIKQGADIDTVLVAAKCKVAP
FT                 LKPVSIPRMELLAAVMGANLAKKVINIRRLNINSSTYWSDSKTVLQWLDMD
FT                 PRKFQAFVMHRVGEIIDHTSRAQWRWIPTKENVADSATKFIKSPNANRWLK
FT                 GPQFLAKPENEWPEQDITLESGEPTELRKHVFIINQLKHFDFAEEYFSDWR
FT                 RLYRAVATFMLYIKRIRAKCLGNPLPKTLDPEIISKAKSWIYKQAQSRTYY
FT                 AEITALKNNTAVNKSSPLIALNVYLDEEGVLRVQGRKYNINPDDAVVLPKR
FT                 SRIAFLITKDFHEKSHHIMHESTINIIRNDFYIPRLRVLYKTVRKACQKCK
FT                 IATSRPEVPQMAAIPAARLASFERPFTYTGVDYFGPILVNVGRHKEKRWGV
FT                 LFTCLTLRAVHIEVAYKLDVSSCIMCLRNFMTRRGTPKEIFSDNGTNFKAT
FT                 EKTVKEELKKIDFDEITIKYEAIKWHFNPPAAPHMGGAWERLVRSVKTVLK
FT                 SICPTSNFNDETLRTALMEAENVINSRPLTFVSLDSGDDEALTPNHLLLGS
FT                 TSGYKRMADDNTDLRLRWQQTQLFADKFWSRWVKEFTPDLTRRSKWFAKRP
FT                 PIAIGDIVIVVDDQLPRNMWPKGRITEVVTAKDGQVRRATIWTPKGIMVRP
FT                 VAKIAILDVGLKDGEDPKDVHGGG"
XX
SQ   Sequence 5435 BP; 1720 A; 1331 C; 1192 G; 1192 T; 0 other;
     tttctttaaa aaactttata aacgctaaaa cttagccgca attacaagtg acgccaacca        60
     attgtgaaat tcattttgag acgcccgcat acatacatat aagccaacat acacaccata       120
     tacgtgtata agggctaggt agatacatat gtataggaac tcgatgaaat agatcacgcc       180
     aggtacacac agtaaaacgg actactgaaa atggctccgg aaagagatat aacgctatgc       240
     aaatcttgca ataagagccg cctaacaaat ggtgtccaaa attgggtgca gtgcgacgct       300
     tgcaaggaat ggtaccactt cgcatgcgct ggagtagacg actctattgc gcgtgtacga       360
     tggacgtgcg acttgtgcat acatgtcgac cgttcttcct caacatcgac gcgcgccgct       420
     atacagccaa acgaatcgga aaacgccgca ccaaacaaag atgccgccat attgtcaatg       480
     gaacccaatt cgaataagcc ggcggagaca tcatttactc aaacttcaaa caacttaatg       540
     atggcgatgc tggaagaaac gcgtgaatct gaaagaaaat atatcgagca gaaatacgca       600
     atactggcac agcagcaggg gatgcaggaa aggcccatcc aattatttgg accaactgca       660
     tctcaactag cagcaaggca aattctacca gcggacctgc cgactttcaa tggcaaccca       720
     gcagactggc caatcttcat aagcatgtac gagaacagca gctcggtagc cggattttcg       780
     gacgcggaaa acatgcttcg tctccagaag tctctcaaag gaaaggctta tgaattggta       840
     cgagataagc tgttactgcc ggcactggtc ccagaggtaa tcaacaccct aaaaaccttc       900
     tttgggcgac cggagcagat ccttgaccgt ctgatcgata aaattcgtaa aataactgta       960
     cacaaagaca gactagagtc ccttatagac tttgcaatgg cggtccgcaa cgcgtgcgcc      1020
     acgatggagg cttgcaacct gtacgcacat cttgacaacc caatgcttct gcgtgaactt      1080
     gttgacaagt tgcccactca acataaatta agttgggcct tgcatccgcg cagtccttcc      1140
     atccctgtcg ttaagtcatt tagcgactgg atatatcatc tagcagaagc cgcctccaca      1200
     gtcatgcctg gacaaaactc atggagcgtg aacactcata cacaagcatt tgccggagaa      1260
     aagacaccaa gcaatgagtg actccgaaga cgatcagcaa caagacgcca aaccaaaccc      1320
     cgcatgcgtc acgtgcaact ctaccgaaca ttacgccgcc caatgcgaga agtttctaaa      1380
     atcgacagtt ccggagagac ggcgtagaat cagcgatgcc aaagcttgct acagatgcct      1440
     gaagacgcac cgacgtaaat gcttctccaa acgtgattgc ggtgttgata attgccaatc      1500
     gaagcaccac cctcttctcc atagagacgc acctaggccc gaactcgtca gtgctcatca      1560
     taaggaagca gacttcgaag aacaatactt tcgaattttg ccagtgactc tgtatggaaa      1620
     cggagtaagg atcaacacgt atgcgttcct ggatgagggc tcatctgtga cattaatcga      1680
     cgaaggaatt ctaaaacacc tcaaagtttg cacatcaccc gaaccactct gtttgcagtg      1740
     gaccggcaac accacccgta cagaggaaac gtctttcaag gcccgaatgc aaatatcgga      1800
     gatggggagt ggaagaaaat tgtggcttaa caacgtacac tcggtcaagc acctcgcgct      1860
     accaaagcaa actgtcgatg taaataaact cgtcggcaga tataatcact tacacggatt      1920
     gccaataaaa tcatattata atgctgaacc gatgctacta attggcgcta acaactggac      1980
     cttggctgtt cctcgcaaaa ttcgtgaggg aagacgcaac gagcccatcg cctcaaagtg      2040
     tactctcgga tggagtattc aaggcacaag caacgccaac agaaattatt ccttccatca      2100
     ctgcgtttgc aactggaacg acatcgaaaa ggcagtaaga gaaagcttca acgcagatcc      2160
     tatcgcaccg cgagagctct tctccaaaga cgacgaaaag gctaaaggaa ttctggagga      2220
     aacatgcaag aaagtaaacg gtagatatca aattggcttg ctctggcgag acaagaattt      2280
     aattctccca gagagctact caaccgcact gaaacgcctc gaatgcctaa gacagaaaat      2340
     taacaaaaat ccagaactat tcgaccaaat tcaaaatcag atcgacaact tagtcgtaaa      2400
     aaactacgcg atcgaactgc aacccgcaga tatagctgag gacacaaacc gcgtatggta      2460
     cctccctata tttatcgcac taaatccaaa caagccaaat aaaataagac tagtttggga      2520
     cgcagctgca aagagccacg gcaaatccct caatgacttt atgctaaatg gaccggatta      2580
     tttaaactcg ctaaccgaag tcctaatggc attcagagtg ggccgtatag gcgtgtgcgc      2640
     ggacatcgct gagatgttcc accaaattat catccagcag agcgacatgc atgttcaacg      2700
     atttttgtgg cttcataagg ataataaaac tccacgtata ttcgtcatgc gtgcaatgac      2760
     atttggtatc tgctgcgcgc cctgcattgc tcattatgta cgcgacaaaa acgcgcagga      2820
     gttcaaagat cagtgtcccc gagctttcga gtccataaca gaggctcatt atgtggacga      2880
     tctcatagac agctacaccg acgactctga ggcgatcgca gtaaccacaa aagtccgtga      2940
     catccatgcc gagggaggct tcgctattag aaattggatc tcaaactcta ccgccatcct      3000
     aaagcatttt ggagagcgcc aaatagacga gcagaacccc aaagagcttg gtgaccccga      3060
     gaaggttctc ggtatgtatt gggaaccctc gaacgacgtt tttaagtata ctttcagatt      3120
     tgcgagactt aaaagagacg tactaaacgg agaaactgta ccaacaaaac gtgaagccct      3180
     acaggttctg atgtccattt tcgatccttt gggcctgcta tcatgttaca caatcggtct      3240
     taaaatgcta ctgcagaaag tatggcgtgc aggcatagac tgggacgagg aattacccga      3300
     cactttactc ggatcatggc gacaatggaa aactgtcctt cttcaagctg ctaaatcgga      3360
     atttcctcgc ttctactcaa ctctgctgcc gaatgctgac cagattgatt tgcacacatt      3420
     tgtagatgcg agcgagtacg cctacgcagc agttgcgtat cttcgtatca agcagggagc      3480
     cgatatcgac acagtcctag tagcagctaa atgtaaggtt gccccgctaa agccagtctc      3540
     aataccacgc atggaactcc tggcagcagt aatgggagcg aacttagcca aaaaagttat      3600
     taatattaga aggctcaaca ttaactcaag cacatactgg tcagactcaa aaacagtact      3660
     gcagtggctg gatatggacc ctcgaaaatt tcaagccttt gtcatgcata gagttgggga      3720
     gataatagat cacacaagtc gagctcaatg gcgctggatt ccgaccaagg aaaatgttgc      3780
     agactcagcc acaaagttta tcaaatctcc taacgctaat cgctggttaa aaggtcccca      3840
     gttcctagcc aagccagaaa acgaatggcc agaacaagac attactctcg aaagtggcga      3900
     accgacggag ctacgtaagc acgtcttcat tataaaccaa ctaaagcatt ttgattttgc      3960
     agaggaatac ttttctgatt ggagacgcct gtatagagcc gtggcaacct ttatgctata      4020
     cattaaaaga atacgcgcta aatgtcttgg aaatccactg ccaaaaactt tagaccccga      4080
     aatcataagc aaagcgaagt cgtggatata taaacaggca caatctagga catactatgc      4140
     cgaaatcact gctctcaaaa ataacacggc cgtgaacaaa tcaagtcctt tgattgctct      4200
     gaatgtctac ttggatgagg aaggcgtgct acgcgttcag ggaagaaaat ataacataaa      4260
     tcctgacgat gccgtcgttc tgccaaagag gtctcgaatt gcatttttga tcacgaaaga      4320
     tttccatgaa aaatcacatc acataatgca cgaatcgaca ataaatatca taagaaacga      4380
     cttctacata cctcgtctac gagtgctgta taaaacagtt cggaaggcct gtcaaaaatg      4440
     caaaatcgcc acatccaggc ccgaagtacc tcaaatggct gcaataccag ccgcccgact      4500
     agcctccttc gagagaccct ttacatacac aggagttgac tactttggtc ccatactagt      4560
     taacgtcggc agacacaagg aaaaacgatg gggagtcctc tttacatgcc tgacactgag      4620
     agccgtacat atagaagtgg cctataaact tgatgtaagc tcgtgtataa tgtgtcttcg      4680
     aaatttcatg acacgtcgcg ggactccaaa agaaatcttc tccgacaacg gaaccaactt      4740
     taaagcaact gagaagacgg tgaaagaaga actcaaaaag attgactttg acgaaatcac      4800
     tataaagtat gaggcgatta aatggcactt caacccacca gcggcaccgc atatgggagg      4860
     tgcttgggag cgactcgtca gatcagttaa gactgttttg aaatcaatct gcccaactag      4920
     taacttcaat gacgagaccc ttcgaacagc tcttatggaa gcagaaaacg tcatcaattc      4980
     tagaccacta acctttgtct ctttagattc aggcgacgac gaagcgctca ccccaaatca      5040
     tttacttctg ggatcgacga gcggctataa gcgcatggca gacgacaaca ccgatctaag      5100
     gctgcgttgg caacagactc aactattcgc ggacaagttc tggagccgct gggtgaagga      5160
     attcacccca gacttgacca gacgtagcaa gtggttcgcc aaacgtcccc caatagctat      5220
     cggcgacatt gttatagtag tcgacgatca acttccaagg aacatgtggc ccaaaggacg      5280
     catcaccgaa gtagtgacgg ccaaagatgg ccaagttcga cgagctacaa tttggacacc      5340
     gaaaggaatc atggtccgcc cagtggccaa gattgctatc ctagacgtcg gcctaaaaga      5400
     cggtgaagat ccgaaggacg ttcacggggg gggaa                                 5435
//
ID   BEL-1_DKi-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   24-JUL-2011 (Rel. 17.07, Created)
DT   24-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DKi_;
KW   BEL-1_DKi-I; BEL-1_DKi-LTR.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-253
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1302-1302 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 253 BP; 85 A; 47 C; 46 G; 75 T; 0 other;
     tgttaccgcc ataaaataga taccgaatct ttagctgggc gataaaaggt gtgaccattg        60
     agtttctaag aattgaaggt atttttcctg gaaatgtatc tggccacttg agaaagcacc       120
     ggcctgggat aaaatacaaa gttttttaaa gctgcgcatt tttctgtaaa acttaatgaa       180
     ataaataaag tgactgctat ataaatttgt cgaacatcta ataaccctac gccaatcatc       240
     cgtgctctca aca                                                          253
//
ID   BEL-1_DPer-I repbase;    DNA;    INV; 7788 BP.
XX
AC   super_2;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DPer_;
KW   BEL-1_DPer-LTR; BEL-1_DPer-I.
XX
NM   BEL-1_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7788
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_2; Positions 2541564 2549351.
XX
CC   'CCAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1265..2542
FT                 /product="BEL-1_DPer-I_1p"
FT                 /translation="MPTGDKKSRKKFKRVSSLSLTHPPSSNGSIATPTSSR
FT                 PSPTERGPTTSRAHAPRAFEALLLPSVVPRTVPSTMAQSAASSARSKFALA
FT                 ASRLTRFDQKLSAPDASTPTRSLSQVHRDQLRSLWAKVDAEFEACVEAITE
FT                 VDPEGVADVQGMYDDCYAVYAQCLAELNDQLEPPTVPHTPQLAVQVPTSGG
FT                 CRLPPCDTEVFSGDYQQWPTFRDLFTAIYIENPRLAPVEKLFHLNKKTSGE
FT                 AHDIVAQAPLTNEGFASAWSALRERFQNKRLILKAQLKILFSLPQIRTESA
FT                 AALKELQRAVHKCLTTLNHSEVSTDSIFADGVLVYLISAKLPKTTLELWEQ
FT                 SVTHKSEIPTWHAMDKFLAERYLSLEVTEDGHPGMETQAHSRASLPMSERS
FT                 KGNPNPFRSPREPCCKAGSLFRNNCGSEAESV"
FT   CDS           2598..6707
FT                 /product="BEL-1_DPer-I_2p"
FT                 /translation="MRPDARSSYIKQKMLCLNCFARGHQIRECQSAHNCNT
FT                 CGDRHHTLLHRGTPVSSQSVPNSVPLPTPAEAQPSVQNYFASGKRAVLLGT
FT                 AIINICHLGTNFRARALIDPGSEATFITERLFQIIKLPFRLAQAQVSGLNQ
FT                 TVSAQSKKLCHFSIRSPTKPGLQLDATAYVLPELSGSLPSHPIPQHSLRDL
FT                 PNLPWADPTFYESSQIDVLIGADILPSILLSGSQTNICGSLLGQETIFGWV
FT                 LTGPVPNTVQGRVASFSTQISTELETPLDKLLTKFWEVEDIPTKIESESDS
FT                 YCERNFLRTTSRTPSGKYVVTLPFRDPDHPGSDLGYSRAAALAQFLRNENR
FT                 LKRNGPLQEQYDTVIQEYLELEHMTEVPPTHGSSTYYLPHHAVFKPESTTT
FT                 KVRVVFNASSPSTNGVSLNDLLHAGPVLQSDLTLQILKWRYFRYVFNADIT
FT                 KMYRQIWVDPKHTPFQRILFRNKEGLIRDYELKTVTFGVNCAPFLAIRVLQ
FT                 QLASDVQSRFPKASRIIRSFMYVDDVLAGADSTDEARLTIRELQAALSSAG
FT                 FPLRKWTSNHKAILAGIPSAHRLHTDFLEMEEESTAKTLGIRWKATSDEFF
FT                 FVPPELAPESSYTKRAVLSQIARLFDPAGWLAPFIVRSKIFMQEIWLQDLG
FT                 WDDELPSEMRQRWQSFLRSYSALDQIHIPRWVGSRPAVKVEHHGFCDASER
FT                 AYGAAIYVRIEVDRLVEVQLLTAKTRVAPVKTVSLPRLELCGAVLLSEMAA
FT                 AILPNMPTASTSCYCWTDSTIVLAWLAKPACHWTTFVANRVTRISQATDIE
FT                 KWCHVPSEQNPADLASRGVPLQELVENQLWWHGPTWLQKGRDQWPAPVNNS
FT                 PVMTLEQRTVKAHFALNPAEDFLERFSNLERALRVRAYILRFTKRCRKLAT
FT                 AQKGHLTSGEITEAEKTLILETQRREYPEEYRCLSGKRPTPRSSSILNMNP
FT                 FLDRHGLIRACGRVAGSEVLRYDERHPIILPYNCQLSRLLAQFTHRITLHG
FT                 GNQLMVRLIRSKYWIPKVQRLMKGVVNSCKVCVIHKRRLQTQMMGDLPTER
FT                 SSFSRPFTHTGVDYAGPFEIRNYTGRACLITKGYVCVFVCFSTKAIHLEPT
FT                 SDLTTEKFLAAFARFVARRGCPQRIHSDNGKTFVGAATLLSSDFLDAFKDS
FT                 VTDAYSHQRVSWRFIPPGAPHMGGLWEAGVKSFKTLFYKATSTRRYTFEEL
FT                 STLLAKIEACLNSRPLSPMSDDPTDLLALTPGHFLIGGPLMSTAEPEIKGN
FT                 LNSIINRWQHLKALNQQFCQRWKEEYLKELHKRTKWQTPTPNLQVGDMVVI
FT                 KEDNLPSNEWRLGRITSVYPGADDRVRVVDILTARGTLKRPIVKVVLLPVE
FT                 PRSSIQQ"
FT   CDS           6798..7742
FT                 /product="BEL-1_DPer-I_3p"
FT                 /translation="MAPRIRASRTTESRRDRGINSYRCRVCRGIHPLRTCH
FT                 HFLRLSPEKRLRAVLINKYCGNCLAHQHSGQDCRSGGLCRVCGKNHHTLLH
FT                 IPSSRRPVRSASGASSPSTAPHVKRRPRRPARSASAASSPSTSAHADRRPR
FT                 LPVSRPVAGPPAPSVDSLLQHRSLILLPTALVVLDTGSKNFETAALIDPCT
FT                 PVSCIDDSLASAFKLPTTCVGDEKVCTAVIRAKMGDFQLETMLKVEPRVRI
FT                 RTPIRQLSDSVRARFGDLRLADEQFHRPATISLILGADVYPKVIQPGFLAR
FT                 EDGLPVAQSTVFGWIVSGACTQP"
XX
SQ   Sequence 7788 BP; 1837 A; 2301 C; 1872 G; 1778 T; 0 other;
     ttggtccttc gagccggatc ttcgccttcc ccataaggag aagctcaccc cagccagcat        60
     cggcggatcg ctccaagtgt aagataagta caacccttcg attgtgccca acaccagtgc       120
     agtgattttg tgcgagtttc ccatcccagt ccgagtgccc gcggcataca tatgtacata       180
     tgtatatgcc tttctcgctc tagctccaaa ttaaaccata cttcgttctg ccaacggttg       240
     tggcctccta tttctccaaa ggtttaattt gatccgagct agctcctgcg ttcctcctcc       300
     gatccagtgc ccacattaat atatacatag ctgtctgtaa atcatattcc taccgctccc       360
     agctaccagc tgagctttcg ctgctgacaa ctgcacatgc acaccaacat acatacatat       420
     gtacatatgt atgtgtaagc aacgcaatcc aagcggctgg caacaaacaa aaagacatat       480
     tcttgcaatt aatttggtgt tcattccgtg catgctcaac gggttacagt tctttcgttt       540
     ggtttaaaga atatagaatc acaaatcaca accaatcttt atttaactca ttatattgcc       600
     aataaaaata aaacacgact ccatacatat catcttacat atgcgcacgc attttcaact       660
     aacaactctt gcacatctgt atatacatac atatattgta ttacctcata aaacggttac       720
     tccgtttttt ttttacccgt tgtttcaatc tcgtcaaaag ggagggtcgt taatccaagc       780
     cacggtacct agcacttaca cccatacaca cacacacata caagcaacag cagcgacgca       840
     gtctgttcat ttttcctttc gctttcgctt ctccaccgtt tgcttgcgtt gttgttggtg       900
     ggagaatatt tttcggtgcc gcgcttgacc gtaacggaac gccaagtgac gcgctaccct       960
     gcttttcaag ggtatattgt tttgaacact agttttgtaa ccgactctat atagggggac      1020
     cttgtgcatc aatatcattg ctcatccatt agtcgctctt ggttggacat ttttttttgt      1080
     atttgatcgt agtattttat atttatattc cggccacgga gcccgacttc tactatataa      1140
     atactcgcga taaattccgc caaggccaca tatccacggt tcgtcgttca aaacttccac      1200
     ttctccattc cgctcacctg ctttgcgact ctgatacgcg ttatcgcaaa tccatcagcc      1260
     aaccatgccc actggtgata agaaatctcg caagaagttt aagcgggtga gttcgctgag      1320
     tttaacccat ccacccagct ccaacggctc aatcgctacg cccacatctt cccgtccgtc      1380
     cccaactgag cgaggtccga ccacgtccag ggctcacgca ccacgtgcct ttgaggcctt      1440
     gttgctcccc tcggtcgtcc ctcgcacggt tccgagcact atggcccaat cggccgccag      1500
     ttccgcacgg tctaagtttg ccttggctgc aagcagactg acacgcttcg accagaagct      1560
     cagcgctcca gatgctagca caccaacccg ctcgctctcc caagtccatc gagatcaact      1620
     ccgaagcctg tgggcgaagg tggacgcgga gttcgaggcc tgtgtggagg cgataacgga      1680
     agtagatcca gagggggtag ctgacgtcca ggggatgtac gatgactgct acgcggtcta      1740
     cgcgcaatgc cttgccgaac tgaacgatca gctcgaaccc ccgactgtcc ctcacacgcc      1800
     tcaactggcc gttcaagtgc cgacgtccgg cggttgccgt cttcctccat gtgacactga      1860
     agttttcagt ggggactatc agcagtggcc cacgttccga gacctgttca ccgccatata      1920
     tatagagaac cctaggttgg ctccagtaga aaaactgttc cacctcaaca aaaaaacaag      1980
     cggtgaggcc cacgacatag tggcacaggc tccactcacg aacgaagggt tcgcgtccgc      2040
     atggagcgcc ctccgtgagc gtttccagaa caagaggctg atactcaaag cccagctgaa      2100
     gatccttttc agtctgcccc aaatccgcac cgagtcagct gcagcgctaa aagagcttca      2160
     gagggccgtc cacaagtgcc ttacgacact caaccactcc gaggtctcca cagacagcat      2220
     tttcgctgac ggagtgttag tgtacctcat atccgcgaag ttgccgaaaa cgactttgga      2280
     gctttgggag cagtccgtga cccacaagtc cgaaattccc acctggcacg ctatggacaa      2340
     gttcctggcg gagcggtacc tgtctctcga ggtgaccgag gacggccatc caggcatgga      2400
     gactcaggct cactccaggg cgagtctacc catgtcagag aggtcaaagg gcaatcccaa      2460
     ccctttccgt tccccaagag agccctgttg caaggcgggt tcactctttc ggaacaactg      2520
     tggatccgaa gcggagagcg tgtgatcttt gctccaaaga gaaccatccg atccgggtgt      2580
     gccctcaatt ccttcagatg agacctgatg ctcgctccag ctatattaag caaaaaatgc      2640
     tttgcttaaa ctgtttcgca agagggcacc agattcgtga atgccaaagc gcccacaact      2700
     gcaacacgtg tggagaccgg catcatacgc tgctgcaccg tggcactcca gtttccagcc      2760
     aatccgtgcc caattccgta ccacttccga ctcctgccga agctcagcct agcgttcaga      2820
     actatttcgc ctccggcaag agggcggtac tcctaggcac ggctattatt aatatttgcc      2880
     acttggggac aaattttcgc gcccgcgctc taatcgaccc gggctccgag gcgacgttca      2940
     ttacggaacg tctcttccag atcattaagt tgccattccg actcgcccag gcacaggtct      3000
     cgggcctcaa tcagacagta tccgctcagt ccaagaaact ctgccatttt tccatccgtt      3060
     ccccgactaa gccgggctta caattggacg ccacagccta tgtcctgccg gaactatcag      3120
     gcagccttcc ctcccatccg atcccgcaac actcgttgcg agacttgcca aacctgccat      3180
     gggcagaccc gacattttac gaaagctcac aaatagatgt cctgattggt gccgacatcc      3240
     ttccatccat cctcttgagc ggctcacaga cgaacatctg tggatctctc ctcggacagg      3300
     aaaccatttt cgggtgggtt cttacaggcc cagtgccaaa cacggtacaa ggccgggtcg      3360
     catccttctc cacgcaaatt tccaccgagc tagagactcc gttggacaaa ctcctcacaa      3420
     agttttggga ggtggaggac attcctacta aaatagaaag cgaatcggat tcgtactgcg      3480
     aaagaaattt cctccgaact acgtcaagaa cgccaagcgg gaaatacgtc gtcacgttac      3540
     cgtttcgcga cccagatcat cccggatcag atctggggta ttcaagggca gccgcgctgg      3600
     cccagttcct aagaaacgaa aatcgcttga aaagaaacgg tcccctacaa gagcagtacg      3660
     acaccgtaat ccaagaatac ctagagcttg aacatatgac agaagttcct ccgactcatg      3720
     ggtcctcaac ctactacctt ccgcaccacg ctgtcttcaa gcctgagagc actaccacga      3780
     aggtccgcgt ggtatttaac gcatccagcc cgtcgaccaa cggtgtgagt ttgaatgatc      3840
     ttctgcacgc cggcccggtc ctccaatctg acttgaccct ccagatcctg aagtggcgct      3900
     atttccggta cgttttcaac gcggacatca ccaagatgta tcgccaaatt tgggttgacc      3960
     cgaaacacac ccccttccag cgaatattat ttcgaaacaa ggagggactc atccgcgact      4020
     acgaacttaa gaccgtaacc ttcggagtca attgcgctcc ttttcttgcc atccgagtgt      4080
     tgcaacagct agcaagcgac gtccagtcca gatttccgaa agcaagtcgc attatccgat      4140
     cattcatgta tgtcgacgat gtcctagccg gagcggattc taccgatgag gctcgactaa      4200
     cgatccgcga gttgcaggcc gcacttagct ctgcaggttt tccgctgcgg aagtggactt      4260
     caaaccacaa agctattctg gcaggaattc cgagtgctca tcgtctccac acagattttc      4320
     tggagatgga ggaagagagc acggctaaga ctctcgggat tcgctggaaa gcgacttcag      4380
     acgagttttt ttttgtccct cccgagttgg cgcctgagtc gtcatacacc aagcgagcag      4440
     ttctgtccca gatcgcaagg ctgttcgacc ccgcggggtg gttggcccca ttcattgttc      4500
     ggtccaagat cttcatgcaa gaaatctggt tgcaggacct gggatgggac gatgagcttc      4560
     caagcgagat gcgccagcgc tggcaaagtt tcctgcggag ctactccgct ctcgaccaaa      4620
     tccatattcc aagatgggtc ggctcccggc cagcagtaaa agtcgaacat catgggttct      4680
     gcgatgcatc cgagagggct tacggtgccg ccatctacgt ccgcattgag gttgaccgtt      4740
     tggtcgaggt gcagcttctc acagcgaaaa cgcgagtcgc acccgtgaaa accgtgtcgc      4800
     tcccccggtt agagctttgc ggggcagtgc ttttgtccga aatggcggcg gctatcctgc      4860
     cgaatatgcc aacagcaagt acgagctgct attgctggac cgattccacc atagtcctcg      4920
     cctggctggc aaagcccgcg tgtcactgga ccacgttcgt ggccaaccga gtgactagga      4980
     tatctcaagc gaccgatatt gagaagtggt gccacgttcc atccgaacag aaccccgcgg      5040
     acttagccag cagaggcgtg ccgttacagg agttggtgga gaaccaactc tggtggcacg      5100
     gaccaacttg gctgcagaag ggccgagatc aatggccggc accagttaat aactcccccg      5160
     ttatgacctt agagcagcga actgtaaaag cccatttcgc actcaaccca gccgaagact      5220
     tcctcgaacg attctccaat ctggagagag ctctacgagt ccgtgcatat atcctgcgct      5280
     tcaccaagcg ctgccggaag ttagccaccg cgcagaaggg ccatcttacg agcggcgaaa      5340
     ttaccgaagc tgaaaaaact cttatcctag agacgcagcg tagagaatac cccgaggagt      5400
     accgctgcct aagcggtaag cggccaacgc caaggtcaag ttctatcctg aacatgaacc      5460
     ctttcctaga ccgccatggg ttgatcagag catgcggccg tgtcgcaggc tctgaagtgc      5520
     taagatacga cgaacgacat ccgatcattc tcccatataa ttgtcaattg tctcgccttc      5580
     tcgcgcaatt tacacaccgg ataactcttc atggcggcaa ccaattgatg gtgcgcctca      5640
     ttcgatcaaa gtattggatt ccaaaggttc aaaggcttat gaagggggtt gtgaactcct      5700
     gcaaggtctg cgttattcac aaaagaaggt tgcaaaccca aatgatggga gatctcccaa      5760
     ccgagcggtc gtccttttcc agaccgttta cgcatacagg ggttgattac gcgggtcctt      5820
     tcgaaatacg gaactataca gggagagcat gtctgatcac gaaggggtat gtgtgcgtat      5880
     tcgtgtgttt ttccacaaag gcgatacatt tagaacccac gtccgacctc accaccgaaa      5940
     aatttctcgc cgccttcgct cgtttcgtcg caaggcgcgg atgtccacag cgtatccatt      6000
     cagataatgg aaaaaccttc gttggtgcag caaccctgct ttccagtgac ttccttgacg      6060
     cgtttaagga ctcggtgact gatgcgtata gccatcagcg ggtttcgtgg cgcttcatcc      6120
     caccaggagc tccacatatg ggaggcctat gggaagccgg agtgaagagt ttcaaaactc      6180
     tcttctacaa ggccacgtcc actcggaggt atacgtttga agagctttct acgctgctcg      6240
     cgaagattga agcgtgcctc aattccaggc cgctctcacc gatgtccgat gatccgacgg      6300
     atctgctagc cctcactccc gggcacttcc ttattggggg gcccttaatg agtacggccg      6360
     agcccgaaat aaaggggaac cttaattcga tcatcaatcg gtggcagcat ttgaaggccc      6420
     tcaaccaaca gttctgtcaa aggtggaagg aggaatacct caaggagctc cacaaacgga      6480
     ctaagtggca gacgccgacg ccaaatctgc aggttggcga tatggtagtc atcaaggagg      6540
     ataacctgcc gtccaacgaa tggcggctcg gaaggataac ttccgtgtat cccggtgccg      6600
     acgacagggt ccgtgtggtg gatatcctta ctgcccgcgg taccctcaaa agaccgattg      6660
     tcaaggtcgt tctcctgcca gtagaacccc gtagttccat ccaacaataa cgtgaatgtg      6720
     cacttgtccc attcacagct ccgtactaat acttcttcga cttctctatt ccatcctagt      6780
     tccatcctca tccagacatg gccccacgga tccgcgccag ccgcaccacg gagagccggc      6840
     gtgatcgagg gatcaactcg taccgttgcc gggtctgccg aggaattcat ccgctacgga      6900
     cctgtcacca tttccttcgc ctgagccctg agaagagact ccgagctgtc ctcattaaca      6960
     aatattgcgg gaactgcctg gcccaccaac actccggcca ggattgtcgc agtggcgggc      7020
     tgtgccgggt gtgtggaaaa aaccaccaca ctctactcca cataccctcg tcgcgtcgtc      7080
     cagtccgctc ggcctcagga gcatcgtcgc catctacagc gccccacgtc aaacgccgac      7140
     ctcgtcgtcc agcccgctca gcctcggctg catcgtcgcc atccacctcg gcccacgccg      7200
     accgccgccc gcgtctcccc gtgagccgcc ccgtggcagg gcccccggca ccatccgtcg      7260
     actcacttct acaacatcga agcctcatcc tactcccgac ggcgctggtg gtcttggata      7320
     cgggttccaa aaacttcgag acggcggcgc tcatcgaccc atgcacgccg gtgagctgta      7380
     ttgacgactc cttggccagc gccttcaagt tgcccaccac ttgtgtgggg gacgagaaag      7440
     tgtgtacggc ggtgatccgc gccaaaatgg gcgacttcca gttggagacg atgctcaagg      7500
     tcgagccccg tgtgcgcatc cgcacgccta tccgacagct gagcgattcc gtgcgggcgc      7560
     gtttcggtga cctgaggctt gccgatgaac aattccatcg accggcgaca atctcgctca      7620
     tcttgggagc agatgtctac ccgaaggtga tccagcccgg gttccttgcg cgtgaggacg      7680
     gcctgccggt ggcccagagc accgtttttg gatggatcgt gtcgggggcg tgcacccagc      7740
     cataggccac cccattatac tttgcaatcc tgcaaggggg ggggagga                   7788
//
ID   BEL-1_DPer-LTR repbase;    DNA;    INV; 367 BP.
XX
AC   super_2;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DPer_;
KW   BEL-1_DPer-LTR; BEL-1_DPer-I.
XX
NM   BEL-1_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-367
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_2; Positions 2541197 2541563.
XX
SQ   Sequence 367 BP; 94 A; 117 C; 85 G; 71 T; 0 other;
     tgttcaggcc agcaatggac agtttccggg cactgtgccg gctccgcgcg cctcggtccc        60
     ggctcgcgct cgcgcgctcg gaggggcgct cggatccaca atccacgatc cacacggcgc       120
     tcacggcagc acaaaggcag cataaaacat agagcataag gcatagagag ttagtgacgt       180
     tttcaccccc gcttcaacct gtcgacatac cgcgcgaata ccgaatcaat acctgaacaa       240
     tatatatata catatacaca caacgaaacc catcggcctt tcctttctgt ggcgactgct       300
     aggagggtta ctggaacata cacctcgccg ttggataatc gatcctcgat ccgccccact       360
     acaaaca                                                                 367
//
ID   BEL-1_DRh-I repbase;    DNA;    INV; 5720 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DRh_;
KW   BEL-1_DRh-LTR; BEL-1_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5720
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1547-1547 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4752-5336] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           708..5720
FT                 /product="BEL-1_DRh-I_1p"
FT                 /translation="MDVKAKLNRGLAAQRKLQLSGSTAANSTSIDINHHAD
FT                 LSFRTRKPRLPNLEIARFHGSYAEWPDFLATFTAVIGNDDELSDIEKLQYL
FT                 RSSLGGVALETIRSLEPSNDNYKKALNLLINRFDNKVLHFQAHVQAIFGLK
FT                 GVEKGSAKGLRELSDSMNAHLRAIHTLATTQQILDGLLIHIVVHKLDQRTR
FT                 EKWEEDLPIAELSSWTAMESFLERRCRMMENLDQALVTQTPGHQVGKNVHK
FT                 YNPSALIASSTNLNHPICLFCDARDHYLPKCSRFLNLSPHLRFREAKKMHL
FT                 CLNCLRKGHSLQQCKSTHCRYCRMKHHSLLHMTPDSSAPPPSSDPLSSSQP
FT                 SPSTSSALVSCSQLDRQVSHPPPNASNTVPINYVLLPTAIVYVKNRVGSFM
FT                 PCRAILDSASQLNFITTRLASQLNLKYRHSHTLISGIGESSMNSDKSVDIF
FT                 AQSRDAGYRASFTAVVTHSITDYQPNFNINTSGWRIPQNISLADPYFNQSQ
FT                 RIDLLIGAGLFFEIIAMGQIHLDSMLPTLQNTKLGWIVSGGMSTTPNHKSV
FT                 LAAIVKDTTDHSEDDALAAIVKRFWEIEDCNPSKPALLPEDLQCEQLFKEN
FT                 CTRLGNGQYSVRLLSTSGFETLGDSYCLARRRFRSLEAKLDRNPVLKAQYS
FT                 AFLQEYINLGHMSLAPKDPTVPQFFLPHHCVHKQESTSTKLRVVFDGSART
FT                 TSGSSLNDLLLAGPTIQQKIFNILLRFRFFKVALCGDICKMYRCVRVSHPD
FT                 DFLQCIVWREKSTDELSVYKLNTVTYGTKPAAFLAIRAMHQLSYDEEDSFP
FT                 IGAKIVRRDFYVDDLISGGESIEEVREIRRQVKDLLSRGHFPIRKWCSNDG
FT                 RALEGESDCDKEKLIQFHDGSAVTKALGLAWDPSSDQLLFNFSQLSVNHRV
FT                 TKRIALSTIAKFYDPLGLITPIVTKAKIFLQSLWNANVDWDDTLPEPILSS
FT                 WGELTSQLSIVQNLKFSRFVMQPQASIQLHGFCDASIAAYGACLYLRSEAN
FT                 GEAKVHLLCAKSRVAPLKALTIPRLELSAALLLAELIVSVKETIDFECDFH
FT                 CWSDSSIVLAWIRQPPRDFNVFVSNRIAKIQEMTKGMTWHHVPTSLNPADV
FT                 VSRGCTPRELLEHSLWANGPPFLLQSSSKWPSLPNAVKDLPERRSAALVGT
FT                 VCTDISINCKFLNSFHKLQRVFAYIYRFISNCRAKSSPSRNRVTVEELNSG
FT                 TVLLLRSIQQVHLAKEYGCLSQDRPCPQKSKLISLRPIIGSDGLLRVGGRL
FT                 QNASLDYDTQHPILLPKDHPVTKAIIVYFHIKYLHAGSQALLATLRQRYWP
FT                 IGGRKFVATVINKCVRCFRMKPVTWEHVMGSLPANRVQPNPAFHTTGVDYC
FT                 GPFYHKAEARNKAPHKCYIAVFVCFSTKATHLEVVQDLTTDSFIAALRRFT
FT                 SLRGTPRTIWSDNATNFVGAKSELTELKNLFLSEPHTAAIASSCLADGIDW
FT                 KFIPPRAPHFGGLWEAAVKSAKFHFYRVVGASILGLDELRTLAYEISAILN
FT                 SRPLCPISENAESLEVLTPAHFLKGSSYTRFPEPDITHLREGRLSRWQRVT
FT                 QMQQQFWKRWSSEYLSLLQERSKWRVETSNINVGSIVLLKEDNLPPLKWQL
FT                 GCIQGVVPGEDGVVRVAMVRTATGLVKRAVAKLAVLPIDSHLVGALLPPTG
FT                 GV"
XX
SQ   Sequence 5720 BP; 1488 A; 1333 C; 1322 G; 1576 T; 1 other;
     ttttggtgac cccgacgtga tcgctgtttt atttgccgtc tgcaactcgg ttttattatt        60
     gtttaatatc gtttaaacaa tatattttgg tttcgctgtc gtttgcgggc attcggtcac       120
     aaacacacgg acttacatac aagtgcacac agctggccgt ttaagtttta catttcgcgc       180
     tgtgaaaagc cggcaggcgg ttgatctttt cgtacatttc gcgctgtgaa aaaatcaaaa       240
     cagtgttgtg ctgcaaatta taaacaaaag gtgaataaca tttaactatt ctaaaagtgc       300
     atagtgcata catatacata atttcaagtc cgctgttatg ggaaaaattg cgttttcgac       360
     gacgcttggt gccgcgcatt tttcgcggca aaagttaaaa ggttattcgc ccctcttaac       420
     cggttcggac atttttcttt tatttttttt gtgtgcgact aagaaatggc tgctccagaa       480
     aacgcggttc ggcctcaaaa tgacgcgcca aatgacatag aattttttcg cgccaaagtg       540
     caatcaattc tgcggcaaac aaacgcgatg atgaagctga tcttctcgcg cgattggact       600
     gggtcaattc cttaaattcg tcatttgact ccgcacagac atcgctggaa cggctggatt       660
     taaaggagac ttcgagtgat aggcgatkgg aattttcgga ggtttttatg gatgtgaagg       720
     cgaagctcaa tagaggctta gcggcccagc gcaaattgca attgtcgggt agcacagctg       780
     ccaactccac atctatagac atcaaccacc atgctgatct ttcttttcgg acacggaagc       840
     ctcgattacc caacctggag attgctcgtt ttcatggatc ttatgctgag tggccggact       900
     ttctcgcaac gttcaccgcg gtcattggaa atgatgacga gctaagcgac attgaaaagc       960
     tgcaatattt acggtctagt ctaggcggcg tggctctgga gaccatacgc tcgctcgaac      1020
     cttcaaatga caattataaa aaggctttga atctgctcat aaatcgattt gataacaaag      1080
     ttttacattt tcaggcacac gttcaggcaa tatttggttt aaaaggtgtc gagaagggat      1140
     ctgccaaggg tcttcgtgag ctcagcgatt ctatgaacgc acatcttcgg gcaatccata      1200
     cgctggccac tacacagcaa attttggatg gattactgat tcatatcgtc gttcacaagc      1260
     tggatcaacg gactcgggaa aaatgggaag aggatttgcc aatcgctgag ttatcttcct      1320
     ggactgctat ggagtcgttt ttggagagga ggtgcaggat gatggaaaat ttggatcaag      1380
     ccttggtaac gcaaacacca ggccatcagg tgggaaaaaa tgtgcataaa tataacccaa      1440
     gtgcactcat tgcgtcttct actaacttaa atcatccaat atgcctattt tgcgatgcga      1500
     gagatcatta tttgccaaag tgctctcgat ttttaaattt gagcccgcat cttcgattta      1560
     gagaagccaa gaaaatgcac ctttgtctaa actgtttgcg caaggggcat agtttgcagc      1620
     aatgtaaatc aactcattgc agatattgtc gcatgaagca ccactcacta ttgcatatga      1680
     cccctgactc atccgcacca cctccatcat cagacccact ctcgagctct cagccatcac      1740
     catctacttc atcagcactg gtgtcatgct cacaacttga tcgtcaggta tcgcaccctc      1800
     caccaaatgc ttcaaatact gtgccaataa attacgtgtt gctgcctact gctattgtct      1860
     atgtaaaaaa tagggttggt tcatttatgc cctgtcgagc aatcttagat tctgcttctc      1920
     aattaaactt cataactacg cgcctagcta gccagttaaa tttgaaatat aggcattcgc      1980
     atacactcat ttctgggatc ggtgagtcct ctatgaactc tgataaatca gtggatattt      2040
     ttgcgcaatc acgggatgca ggctatcgtg cgtcattcac agctgttgtg actcacagta      2100
     tcactgatta tcagccgaat ttcaacataa atacatcagg atggaggatt ccacaaaaca      2160
     tttcgctcgc tgacccttat ttcaaccaat cacaacgaat cgacttgtta attggcgctg      2220
     gtctgttttt cgaaataatt gctatggggc aaatacattt ggatagcatg ttgccaacac      2280
     tccaaaacac caaacttggt tggatcgttt ctggtgggat gtcgactact ccaaatcata      2340
     agtctgtctt agccgccatt gtcaaggata ctacggatca ttctgaggat gacgcacttg      2400
     ctgccatagt aaagcgattt tgggaaattg aggattgtaa tccatcaaag ccagcactgt      2460
     tgcctgagga cttgcaatgc gaacaactgt tcaaggaaaa ctgcactaga cttgggaatg      2520
     gtcaatactc tgttcgtctc ttatccactt cgggattcga aactttaggt gattcctatt      2580
     gcctagctcg tcgtcgtttt aggagtttgg aagctaagct agatagaaac cctgttctca      2640
     aagctcagta ttcggctttt ctccaggagt acatcaactt aggccacatg tctctcgcac      2700
     caaaggatcc aacagtacca caattcttct tgccacacca ttgtgtacat aagcaggaaa      2760
     gtacgagcac aaagcttcgg gtcgtctttg acgggtctgc tagaactact tctggcagct      2820
     ctctgaacga cttgcttctt gcagggccaa caattcagca aaaaatcttt aacattctac      2880
     ttcgcttccg attttttaaa gttgccctct gtggagacat ctgcaagatg taccgctgcg      2940
     tgcgtgtgtc gcacccggat gactttttgc agtgtattgt ttggcgagag aagtccacgg      3000
     atgagttgag tgtttacaaa ctgaacacgg tgacttatgg taccaagcca gctgcctttt      3060
     tggctataag agccatgcat cagctctctt atgatgagga ggattcgttt ccaattggag      3120
     caaaaattgt tcgtagggac ttctacgtgg atgatttaat ctctggtggc gagtcaattg      3180
     aagaggttag ggaaattcgt cgtcaggtga aggatctatt gtcgcgaggc cattttccaa      3240
     tccgcaaatg gtgttctaat gatggacgcg ccctcgaagg agagtctgac tgcgataagg      3300
     agaagctaat tcaatttcac gacggatcag ctgttaccaa ggcgctggga ttagcctggg      3360
     atccttcttc tgaccaactt ctgttcaact tttctcaatt atctgtaaat catcgagtca      3420
     ccaagcgtat tgcactttca acaatagcca aattctatga tccgctcggt ttaataacac      3480
     cgattgtcac aaaggccaag atctttttgc aatccctatg gaatgctaac gtggattggg      3540
     atgacacatt accagagcct attctttcgt catgggggga gttgacctct cagttatcga      3600
     tcgtccaaaa cttgaaattt tcacgattcg taatgcaacc tcaggcttcc atccagttgc      3660
     atggattctg cgatgctagc atagcggctt atggagcgtg tttatacttg cggtcggagg      3720
     ccaatggaga agcaaaggtc catttgctct gcgccaagtc gagagtggcc cctttaaagg      3780
     ctttgacaat tccaagattg gagttgtcgg cagcgctttt attggcggag cttatcgtaa      3840
     gcgtcaagga aaccatcgat ttcgaatgcg actttcattg ctggtcagac tcgtctatcg      3900
     tactggcgtg gattcggcag cctccgaggg atttcaacgt atttgtatcc aacagaatcg      3960
     cgaaaattca ggagatgaca aaaggcatga cttggcacca tgttccaaca agcttaaatc      4020
     cggcggatgt cgtatcgcga ggctgtaccc cgagagaatt gctggagcac tccctgtggg      4080
     ctaacgggcc tccattcctg ctgcaaagct cgtcaaaatg gccctctctt ccaaatgcag      4140
     ttaaggatct tccagaacgt cgttccgcag cgctagttgg aactgtttgc actgacattt      4200
     cgatcaactg caaattcctt aactcttttc ataagttgca gcgtgtattt gcgtacattt      4260
     atcggttcat ttcgaattgc agagcaaaat cttcaccttc aaggaaccgt gttaccgttg      4320
     aggagctcaa ttcggggacc gtacttcttc tgaggagcat ccaacaggtt cacttagcca      4380
     aggagtatgg atgtcttagc caggacaggc cgtgtccaca gaagagcaag ctgatttcgc      4440
     tgagaccaat aatcggctcc gatggattac ttcgcgttgg tggaagactt cagaatgcaa      4500
     gcctggacta cgatactcag catccgatat tgttacccaa ggatcatcca gttaccaagg      4560
     caatcatcgt atattttcat ataaaatact tgcacgcagg atcgcaagcg ttacttgcca      4620
     cattaaggca aaggtattgg ccaattggag gacgaaagtt cgtggctacc gtcatcaaca      4680
     aatgcgtcag atgttttcgg atgaagcctg tcacttggga gcacgttatg ggcagcctgc      4740
     cagcaaatcg agttcagcct aacccagcat ttcataccac gggagtggat tattgtggac      4800
     cattttatca taaggcagag gcccgcaaca aggcgcctca caagtgctac atcgccgtct      4860
     ttgtctgctt ctctacgaag gccacgcatt tggaagtcgt ccaggatctc acaacggatt      4920
     ctttcatcgc agcgttgaga agattcacca gcctgagagg cactccgcgc actatttgga      4980
     gtgacaatgc gacgaatttt gtcggcgcta agagcgagct aaccgagctg aagaatctat      5040
     ttctgagcga accccacacg gctgcgatag cttcctcctg cttagctgat gggattgatt      5100
     ggaagttcat acctccgcgt gccccacatt tcggtggttt atgggaggcg gctgttaaat      5160
     cggccaaatt tcacttttat agagtcgtcg gtgcttccat cttgggcctc gatgaattga      5220
     gaactctcgc ttatgagatt tctgccatcc ttaactcccg tccactctgt ccaatttcag      5280
     aaaacgctga aagtcttgag gtgctaacgc cggcccattt cctgaaaggc tccagctaca      5340
     caaggtttcc tgagcctgat atcacgcatc tccgagaagg ccgcctcagc agatggcaaa      5400
     gggtgacaca gatgcagcag caattctgga agcggtggag cagcgagtat ttatccttgc      5460
     tccaagaaag gagtaagtgg cgcgtcgaaa catccaacat caatgtcgga agcatcgtgt      5520
     tgctgaagga ggacaacctt ccacccttga aatggcagct ggggtgcatc caaggagtcg      5580
     ttccaggcga ggacggcgtc gtcagagtag ctatggtccg tacagctacg ggtctagtca      5640
     agagagccgt cgccaagtta gccgttctgc ccatcgattc ccatttagtt ggagccctac      5700
     ttcctccaac ggggggagta                                                  5720
//
ID   BEL-1_DRh-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DRh_;
KW   BEL-1_DRh-I; BEL-1_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-291
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1548-1548 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 291 BP; 77 A; 73 C; 60 G; 80 T; 1 other;
     tgttcggagc agcccgccag cgcctagtct agtgcgcata ggtgtatggc tgaacctgca        60
     gcgctcttgc gctctcctct ttattatttg ccttatctcg ctaagctgtc gcgctaccta       120
     ttcagcgact acattgtaaa acccgaatta aaatatgaag ccaggctttc ggctgcagca       180
     gtgcagattc gactggcaga ataaacacga cacgtacata aactgatwaa attaaaaagc       240
     gttattatta cataacctaa gggtggcatt tttgttgtct tcccccaaac a                291
//
ID   BEL-1_DSer-I repbase;    DNA;    INV; 8447 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DSer-LTR;
KW   BEL-1_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-8447
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1976-1976 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1929..6665
FT                 /product="BEL-1_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 and ribonuclease H."
FT                 /translation="MPIEGKSKPTSAPGKESKATPSTPVPPRARPTPKSVS
FT                 PKGRTVLSGSPGRELPSPSSKTTPRIVISHPLAKASSESSLAVKPEIPSTS
FT                 GSEFLRVTRAVSKKMASSDQPTAATAALHKFIAVSDRVSLFEAKINTPGQA
FT                 TPSSHTLQVRLQQVRALWEKVEKEYETCSDLIALEGSLSTLPLLQSKYDYC
FT                 YSVYEACAAQIGETLERVTPPTVPAPSQPQLSSGCRLPPCDTEVFDGDYLR
FT                 WPTFRDLFTAVYVNNPRLTPVEKLFHLLTKTSGEAKTIVAKSPLTNDGFAS
FT                 AWEALQDRFQNKRLLVNSQLKLLFNLSSISQESGHALKELQSTIQGCLTAL
FT                 AHSQISTENWDCLLVFLCASKLPKATLSLWEQSLTSKSEIPAWEEMNTFLS
FT                 ERYRTLEAIDDMKPTQTFPKKLQSFETKVSTKQRGCDLCSKENHPVRLCPR
FT                 FLQMSVDARSGYIKKKQLCLNCFARGHQLRDCSSPYSCFTCKGRHHTLLHR
FT                 GPPSSDHASSTSPPTPSRPSSSNASASTSTVQNYFASGTTAVLLGTAIIDV
FT                 CHLGTNYRARALIDSGSEATFISERLFKIIKLPFRNIQTQVSGLNHSVSAK
FT                 STKLCNFAIRSPTKPGLQLDTVAYVLPELSGKLPSHPVSKNSLKDLPDLQW
FT                 ADPRFFESAQIDILIGADILPSVMTGGTQRDICGSLLGQETIFGWVLTGPI
FT                 SSIQASRVASFTTQVRHDHNDALDTLLSKFWEVEDLPMKMVGESESYCETN
FT                 FIRTTKRDASGRYVVTLPFCDPENSGSNLGYSRSIALAQFLRNENRLKRDF
FT                 SLKEQYDSVIQEYLDLGHMKEVSPTHSSPTYYLPHHAVLKPESTTTKLRVV
FT                 FNASSPSANGTSLNDILHAGPVLQSDLTIQILKWRYFQYVFSADITKMYRQ
FT                 IWVDPKHTPFQRILFRNKEGDIRDFELQTVTFGVNCAPFLAIRVLKKLAED
FT                 VQGLFPKASRILNQNMYVDDVLAGANSLKEAQISIQELQEALNSAGFPLRK
FT                 WTANHRSILENIPVEHILHSEFLDIDAETTAKTLGIRWKARSDEFYFVPPE
FT                 IALETSYTKREVLSQIARLFDPAGWLAPFIVRSKIFMQEIWLQDLGWDDTL
FT                 SSEMSQRWRSFLLEYSDLSQIRVPRWVRYQPDIKVEYHGFCDASQKAFGAA
FT                 IYVRVEFGHETFAHLLTAKTRVAPVKTVSLPRLELCGAVLLTDMVATILPH
FT                 MPTASSDVRCWTDSTIVLAWLRKPACNWTTFVANRVAKITQAIPVDCWAHV
FT                 RSEQNSADLASRGVSLHELADSQLWWHGPEWLQGPQELWPVQNDVHPNTEL
FT                 EQRAVRVHFSKAPSDEFLERFSKLDKALRVLAYVLRFFKRCRKGSISPTSR
FT                 LTSEEIREAERARISIAQRRAYGQEYKCLREKRPLPVASSIVNLYPFIDRH
FT                 GLLRACGRVTASKALQYDERHPILLPYDCRLARLLIQLTHQITLHGGSQLI
FT                 VRLIRSKYWIPKIKNLVKAVVNPCKVCTIYKKRLQTQLMGDLPRDRVSFSR
FT                 PFTYTGIDYAGPFEIKNYTGRACLVTKGYVCVFVCFSTKAIHLEPASDLNN
FT                 REVPSSLCSFRS"
FT   CDS           6669..7445
FT                 /product="BEL-1_DSer-I_2p"
FT                 /translation="ARLSSAGPLGQWQDLCGGSSCVIKGLPTARPRAVNAA
FT                 YSPQGLVWRFIPPGAPHMGGLWEAGVKSFKALFYKSTATRKYTFEELATLL
FT                 AKIEACLNSRPLSPMSEDPSDLLALTPGHFLIGGPLLSTAEPEIKGEAKSI
FT                 LNRWQHLKAQHQQFSARWKEEYLKELHKRNKWQFPTTNLKIDDMVVVKDDN
FT                 LPPNEWRLGRIVSVCPGADGRVRVVEIRTARGTIKRPVHKVIRLPGESKVP
FT                 YVSNDENPSVSNHMTDSH"
FT   CDS           7709..8413
FT                 /product="BEL-1_DSer-I_3p"
FT                 /note="retropepsin (partial)."
FT                 /translation="MAAKSVARATIPLLHLHEKPPRSSPPAPPSKRKARPP
FT                 XPRRAREPRPSVMTVSRSPSPAIEATRPAASTPSSSVAALLHQKVVHVLPT
FT                 ACVVLDTGKTTFEMGAMIDPCMAVSSIDRSLAAAYRLPTVDVGEDQVCSAT
FT                 IRSRTGSFSLEVILRLDPSLKIRTPTRTLSDATRAKFDDIRLADPLFHRPA
FT                 TISLVLGSDLYPKLIQPGFLKLDEGLPVAQSTVFGWTVSGACREA"
XX
SQ   Sequence 8447 BP; 2193 A; 2221 C; 1914 G; 2114 T; 5 other;
     tggtccttcg atcgccggat ctatcctgat cgcaccagtg ccccatcgcg gattttttcc        60
     aaagataagt acgactcgcc ttccaaagtc cattcgtccg tggtcgccat attccttttc       120
     caacggcgtt tttttttctt tccatccgat tccgaccaaa gtgaaaagtg ccaaataaat       180
     atatatatat atatatacat atatacatcc aagtgcatac ctacatacat atgcccagcc       240
     acagtgaatt ttcttctttt ctaagtgctt aagcgcttgc caatatcggc cccctacttc       300
     gtctcactgt gatccgctgt tccaagcata tgtatataca tatatgtaca tatatatata       360
     tattatttaa tccagaggcc tattcacaca cataagtacc agtgtccgtc attaaactgc       420
     acttaatttt taatatacaa tacgaaaata tatatatata tacacacaca ccacacacac       480
     acacatgcac aagaaataac cctaatttta atatacaata cgaaaatata tatatacaca       540
     cacacacatg cacaagaaat aaccctattt tttaatatac aatacgaaaa tatatacaca       600
     cacacacaca catgcacaaa aaaatactat tttttaatat acaatacgga aaaaaacaaa       660
     aaaaaaatta tacacacaca caaaaaatat aacctttttt atatatacat acaaaaaaaa       720
     taaataataa agatatatat acacaaaaac acatttgcac aaacattatt aaaaaataat       780
     aataataagt ccacatacat acatacatac atacattggg agcgtcgcgc tattctgcgc       840
     tgagcattga tctctataat tatcatacat acatacatat atattgggca agcttcgcgc       900
     tattctgcgc tgagcatcga tctcttcaat tatctacata catacataca tatatattgg       960
     gcaagcttcg cgctattctg cgctgagcat cgatctccaa ttacatacat acatatatac      1020
     acacgcccgc ataagggcat atcaagtgat tatttgtcat ttctttttcg tctcctcttt      1080
     gtgcctagag cgtgtacaag cacctgcact tatacagtcc acagccgaac agtgccgacg      1140
     agataaaatc cgccacctac aatttttaaa gaaataaatt tcgtgaactg attaaaaaaa      1200
     aaaattatcc aaatttattt ttacttttct taattgctgc ataacgagct acacacscgt      1260
     tagctatttt atagctggtt tttccwkcta gtttgkcgat ttttttgatt ttttttcttt      1320
     tttttttctt ctgtctcgct tcgtgctcac atcccttctg cgatcatccg tcgtattccg      1380
     gaagttaaaa tcgaggctgc ggctggaagc gattgtcaag taccgctcaa taggcctata      1440
     gctaattcca ttagcttggc gagaaaagtt ctttttttaa ttgtgttgcg gtctttgtcc      1500
     ctagttgggg ttgttgcgct attgtagccg attcccacct tttttttagc cgagtgtctg      1560
     ctactatttt ttttatttat taaaaaaaaa taagagagca atccttctct catttggcta      1620
     tttttttgtg gttttctagc taattgcttt tgaaaaaaag gaagctgaag tttcttttgt      1680
     ttgatttttt ttatgtgcgc atttgaccaa gctagaggga tatttttttg gttatctgct      1740
     ttagctaaca ctggtagccg catttcagct atttttttag ctaatttatt tgtttttttt      1800
     ttttcgaatt gagatttaga ctgggttgtt catcctagtc caggccttgt cgcagtgttt      1860
     tttttttgta ttctggttga gcggtgcgtc agtcaggcgg tctcggtttc gtcaggccct      1920
     aattgagcat gcccatagag ggaaagtcga aaccgacatc tgcgccagga aaggagtcca      1980
     aagccacccc atccactcca gtaccgcctc gcgctaggcc aacacccaag tcagtcagtc      2040
     cgaaaggaag aaccgtattg tcgggatctc caggaaggga gcttccgtcg ccaagttcaa      2100
     agaccactcc ccggattgta atttcccatc cattggcgaa agcatccagc gaatcgtcgc      2160
     tggcagttaa gcctgagatc ccctccactt ccgggagtga attcctaagg gtgacacgcg      2220
     cggtcagcaa aaagatggca tcctccgacc agccaacggc agcaaccgca gctttgcaca      2280
     agtttattgc ggtcagcgat cgcgtaagcc tctttgaggc aaagataaac actcctggtc      2340
     aagcgacacc gtcctcgcat acactacaag tacgcctcca acaggtgcga gccttatggg      2400
     aaaaagtcga gaaggaatat gagacctgct ccgacttaat tgccctagaa ggatccctca      2460
     gcacattgcc gctgctgcaa tcaaaatatg attattgcta ctcggtatat gaggcatgtg      2520
     cagcacaaat tggtgagacc ctagaaaggg tgacgcctcc taccgttcca gctccctctc      2580
     aaccccaact ttcgtccggt tgtcgtctac ctccgtgtga tacggaagtt ttcgacgggg      2640
     actacctccg atggcccact ttcagggacc tgttcacggc agtttatgtt aataacccca      2700
     ggctgacccc ggtcgagaag ctgtttcatc ttctcacgaa gactagtggc gaagcaaaga      2760
     ccattgtcgc aaaatccccg ctgacaaatg acggcttcgc ttcagcgtgg gaagctcttc      2820
     aagaccggtt ccagaacaag cgactcctag tcaacagcca actcaagctc cttttcaact      2880
     tgagttccat ttctcaagag tcgggacatg ctctaaagga gctccagtcc acgattcagg      2940
     ggtgtttaac agcgctagca cactcccaaa tctccacaga aaactgggat tgtctactgg      3000
     ttttcctgtg cgcaagcaaa ttgccaaagg ccaccctgtc cttatgggaa cagtccctca      3060
     cttcaaaatc cgagatacca gcttgggagg aaatgaatac tttcctgagt gagaggtatc      3120
     ggacattaga ggccatcgac gatatgaaac caacgcagac atttccgaaa aagcttcaat      3180
     ccttcgagac aaaggtcagc accaaacaga gagggtgtga cttatgctcc aaggagaatc      3240
     atccggtaag attgtgcccg cgctttcttc aaatgtccgt cgatgcgcgt tccgggtaca      3300
     tcaaaaagaa gcagctctgt ctgaattgtt tcgcgagagg ccatcagctt cgtgattgct      3360
     caagccccta cagttgtttc acatgcaagg ggaggcatca tacgctgctg catcgcggcc      3420
     ccccaagttc cgaccatgcg agttccacct cgccccctac gccctcaaga ccctccagca      3480
     gcaatgcatc tgcgagcaca tcaacggtgc aaaattactt cgcctccggc actacagccg      3540
     ttctactggg cacggcgatt atcgacgtgt gccacttggg gactaattac cgagcacgag      3600
     ccttaatcga ctcgggatca gaggcgacgt tcatttccga gcgtctcttc aagattatta      3660
     agttgccatt ccgcaacatc cagacgcaag tctccgggct aaaccattcg gtttcggcaa      3720
     agtcgacaaa actttgcaat ttcgcaatcc gctcccctac caaaccgggg ctacaattag      3780
     acaccgtagc ctatgtcctt ccggaattat cgggcaaatt gccgtcgcat ccagtttcaa      3840
     aaaattcctt gaaggacctg cccgatcttc aatgggcgga ccctcggttc tttgaaagtg      3900
     cccagatcga catcctaatc ggggccgata ttctaccgtc agtgatgacg ggtggcacgc      3960
     aaagagatat atgcggctca cttctaggcc aagagaccat ctttgggtgg gtgctaacgg      4020
     ggccgatctc cagtattcag gccagccgag tcgcatcctt cacgactcag gttcgccatg      4080
     atcataatga tgcattggac acccttctca gcaagttctg ggaggtggag gatcttccaa      4140
     tgaagatggt aggagagtcg gagtcttatt gtgagactaa ttttattcga actacgaaaa      4200
     gagacgcaag cgggaggtac gtggtcacgc tcccattctg cgaccctgaa aactccggat      4260
     ccaatctggg atattcaagg tccattgcgt tggctcagtt tcttcgaaac gagaatcgtt      4320
     taaaaagaga cttttcccta aaagagcaat atgacagcgt gattcaggaa tatctggatc      4380
     tgggtcatat gaaggaagtt tcaccgactc atagttctcc tacctattac cttccacatc      4440
     atgcagtact taagcccgag agcaccacga caaagcttcg cgttgtattt aacgcctcca      4500
     gtccgtctgc aaatggaacc agcttaaatg atattcttca tgctggccca gtcctgcaat      4560
     ccgatttaac tatccagatt ttgaagtggc ggtactttca atacgtattt agtgcagaca      4620
     tcacaaaaat gtaccgtcaa atctgggtcg atccgaagca tacgcccttt caaaggattc      4680
     tgttccgaaa taaggaaggg gatatccgag acttcgagtt gcaaacggtt accttcgggg      4740
     tcaactgcgc gcccttcctc gccattcgag tgctaaaaaa gctggcagag gatgtccaag      4800
     ggctatttcc aaaagccagt cggattctta atcaaaacat gtacgtcgat gacgtcttgg      4860
     caggagcaaa ctcccttaag gaagcccaaa tctcaatcca agagttgcaa gaggctctta      4920
     actccgcggg tttcccatta aggaagtgga ctgccaacca caggtccatt ttggagaata      4980
     ttccagtcga gcacattctt catagcgagt tcctcgacat cgatgccgaa actacggcca      5040
     agaccctcgg tattcgttgg aaggcaaggt ccgacgaatt ttatttcgtc cctccagaaa      5100
     tagcactgga aacctcctac accaagcgcg aggtgttatc ccaaattgcg aggttgtttg      5160
     atccggccgg atggctcgct ccgttcatag tgcgctccaa gattttcatg caagaaattt      5220
     ggctgcaaga tctgggctgg gacgatacgc tttctagcga aatgagtcag agatggcgat      5280
     cgttcctcct ggagtattcc gacctcagcc agatccgggt tccgagatgg gtccggtacc      5340
     agcccgatat aaaggttgag taccatggct tctgcgatgc gtcccaaaag gcttttggag      5400
     cggctattta cgtgcgcgtc gagtttgggc acgaaacctt cgcacacctc cttacagcca      5460
     agacacgagt cgctccagta aagaccgtgt cccttcccag gctagagctt tgcggtgccg      5520
     ttctgttgac cgacatggtg gcaacgattc ttccacatat gccgactgcc agctccgacg      5580
     tacgctgctg gaccgattcc acgatcgtgc tggcctggtt acgaaagcct gcttgcaact      5640
     ggaccacgtt tgtggccaac agagttgcca agataaccca ggcaatacca gtcgactgct      5700
     gggcacacgt tcgatccgaa cagaactccg ccgatttagc tagtcgaggc gtgtccctac      5760
     acgagctagc ggacagtcaa ctgtggtggc atggacctga gtggctgcaa gggccacaag      5820
     agctatggcc agtacagaac gatgtgcatc cgaacacaga gctagagcag cgggcggtca      5880
     gggtgcattt tagtaaggcc ccctctgacg agtttctgga acgcttctcg aagctggaca      5940
     aagcgttgcg agtcctggcg tatgttctac gattcttcaa gcgctgccgc aagggctcaa      6000
     tttcgcccac ttcacgactc acgagtgaag aaattcgaga ggcagaacga gcgcggatct      6060
     ccattgcgca gcgtagagca tacggccaag agtacaagtg tttgcgagag aaacggcccc      6120
     ttccagtggc atcttcaatt gtgaacttat atccgttcat tgaccgacac ggtcttctaa      6180
     gggcatgtgg gcgcgtcacg gcgtcaaaag ccctgcagta cgatgagcga catccgatcc      6240
     ttctgcccta cgactgtagg ctggcccgcc ttctcattca gttgactcac cagattacgc      6300
     tccacggcgg cagtcaattg attgtgcgcc tgatccggtc aaagtattgg attccgaaga      6360
     tcaagaatct tgtcaaggct gtggtgaatc cgtgtaaagt gtgcacaata tataagaaaa      6420
     gacttcaaac acagctgatg ggcgaccttc cgagagaccg agtctccttc tccaggccct      6480
     ttacctacac gggcattgat tatgctggcc ccttcgaaat caaaaattat actgggagag      6540
     catgtctcgt taccaaggga tacgtgtgtg tattcgtgtg tttctctact aaggctatcc      6600
     atttggaacc cgcatccgat cttaacaacc gagaagttcc tagcagcctt tgctcgtttc      6660
     gtagctaggc gcggttgtcc tcagcgggtc cactcggaca atggcaagac ctttgtgggg      6720
     gcagcagctg tgttatcaag ggacttccta cagctcgtcc aagagccgta aatgcagcat      6780
     acagtcctca aggactagta tggcgtttta taccaccagg ggctccacac atggggggtc      6840
     tgtgggaagc cggggtgaaa agtttcaaag cccttttcta caaatccacg gctacccgca      6900
     agtacacatt cgaggagcta gcgacgcttc ttgcgaagat cgaagcttgc ctcaattcta      6960
     gacccctctc ccccatgtcc gaagatccat ccgatttgct ggccctcaca ccaggccatt      7020
     tcctaattgg agggccgttg ctttccacgg ctgagcccga aataaaaggc gaagcaaaat      7080
     cgatactgaa tcgatggcaa catttgaagg cccaacacca gcagtttagt gcacgatgga      7140
     aagaggagta tttaaaagag ctccacaaac gcaacaagtg gcaatttccg accacgaatc      7200
     tcaaaataga cgatatggta gtcgtcaagg atgacaatct gccaccgaac gagtggcggc      7260
     tcgggagaat cgtttcggtt tgtccgggcg ctgacggccg agttcgagtg gtggagatcc      7320
     gtacggcgcg cggcacaata aaacggcccg tccacaaggt catccgcctc cctggggaga      7380
     gtaaagtccc ctacgtatcc aacgatgaaa atccttccgt ttccaaccac atgaccgact      7440
     cccattaaag tttttctttt tcgtttcccc gcagaacaac tcgacatcat ggtgccgcgt      7500
     cctcgaaccg ccgaaaccct ggacagcaga cgttcacgag gtatgaactc ctaccgctgc      7560
     cgagtctgcc ggggaatcca tcctcttcgg aagtgcaaga ggtttctaaa actgagcact      7620
     gaaaagcgcc ttcgagcagt actgataaac aagtactgct cgaactgcct cgcccaccaa      7680
     cattcagacg gaacgtgtcg cagcatagat ggctgcaaaa agtgtggcga gagccaccat      7740
     accgctgctg catctgcatg aaaagccgcc gcgttcatcg ccaccagcac ctccttcgaa      7800
     acgcaaggcg cgcccgcctk ctccgcgtcg ggcgagggag ccgcggccgt ccgtgatgac      7860
     cgtctccagg tctccgtcgc cagcaatcga ggcaacccgt cctgcggcct ccactccatc      7920
     ctcgtcggtg gcagcgttgc tgcaccagaa ggtcgttcat gtgctcccga cggcctgcgt      7980
     cgtgcttgat accgggaaga cgaccttcga gatgggggcc atgattgacc cgtgcatggc      8040
     ggtcagctcg attgaccggt cgctggcggc ggcgtataga ctacccaccg tggacgtagg      8100
     agaagaccag gtctgctcgg cgaccatccg gtcccggacc ggcagtttca gcctggaggt      8160
     gattttgagg ctcgatccca gcctcaagat cagaacccct acacggactc tgagcgacgc      8220
     cacccgggcg aaatttgatg acatccgtct cgctgatccc ttgttccatc gcccagcgac      8280
     aatttccctc gtgttgggat cggacttgta tccgaagctg atccaaccgg ggttcctgaa      8340
     attggacgag ggattgcccg tcgcccagag caccgtattc ggatggaccg tctccggagc      8400
     atgccgagag gcctaacgcg gtcttgcgtg cgaaaggggg gggagaa                    8447
//
ID   BEL-1_DSer-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-338
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2007-2007 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 338 BP; 85 A; 100 C; 79 G; 69 T; 5 other;
     tgttcgcgcc acaagggcgc ttaatttcga gcagcagtgt gggagcacga gctttcgctc        60
     tcgctgctcc cggccgtcgc tcgctccctc tcgtctcgta gccgaaggcg actccaccgg       120
     tcccagcagc ccttgagcgg ggctttagat ttaatcgtaa acgaagtgcc taataaagcg       180
     waccaaaktg aagccaacta ckckttttac tgtgcaagag acataaagtg gacaacacca       240
     acaacaacac tgaagtcaac cctgccatcg aacmaggagg aattactggc tgacgacggc       300
     tgaagagttt ttggacacca tccgcccact ccatttca                               338
//
ID   BEL-1_DTa-I repbase;    DNA;    INV; 5674 BP.
XX
AC   .
XX
DT   27-JUL-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DTa_;
KW   BEL-1_DTa-LTR; BEL-1_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5674
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1585-1585 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(257..5170,5032..5610)
FT                 /product="BEL-1_DTa-I_1p"
FT                 /translation="MPKTRLKKQRNDDNTPRGIEDTPRPGTSAANLLEISM
FT                 ATVMPGAASTQKVPEKWDEDVQSNRSHQSQRSVKAQKLQLQMEHLQKQQEL
FT                 KAKRMQLEFEEKQLELEIQMQMTEIEEDNSSQDDQDDNIGDEYNNGTRTRE
FT                 WLKSSQRKQTYDDQPDDINSNAIVSFMARQTIKQELPLFSGDPLEWPIFIA
FT                 EYENSSQVCKFTDYENINRLRKALTGRAKECVQSLLLVPQNVTEIIDILRN
FT                 RFGDCSHVVKMMIDKIRTFPVIKEDKYDRLVTFYDMITNLIQTLLSFNDID
FT                 QIRNNLLFEEILEKIQVSQRIAFIKHFQKIKSDDPKIIVFHEWLGQTIKAA
FT                 TMLGFGQNKSKDTTLTVSSPVKTFEKSKYYCNYCKSTDHHITDCPKFKYLS
FT                 VDKRWEFTSHNKLCISCLGRNHIMKDCKRKKTCRAANCKFNHNFLLHKDKD
FT                 NTASASLDMPSNPDQNKTIPDMNCNINFGCNKVLLKVIPVTLIGPQKAIET
FT                 YALLDEASTISLIDEQLATDLQLDGPTSPLKMQWTNNEVYEQANSKVVSVG
FT                 IRGKEQTSKVFTLRKVKTVSCLNLPLQTLSISDMSETYEFLKDFSFCSYQN
FT                 AHPKILIGQDNWSIIVSRKLKYQSFQGPVASKTALGWVVHGTVGMIREIPD
FT                 RNYSCHVFNCVGYDNPNDDLDILHNLVKSYWSIENELLTPHDFPTSLDDRR
FT                 CLEIVDKTLKRIDDRFQCGLFWKSDDIKLPESYKNAYARLLLCERKMDKNP
FT                 EYGKKYKQTFDSYIQNRYMKKLTSLEKTKITPLTYYLPHFGVLNSNKPDKL
FT                 RIVFDAASKSHGYCLNDFLLPGPDLYSQLSAVLLNFREHKIAFVGDIKEMF
FT                 LQIKVQESDRCAQRILWRGDNRQSEPDVYEIQVLFFGAKCSPSIAQQVRNR
FT                 NALDFQNDYDQACRDIVTKHYMDDYLGGAPDINTAVKLIKDVTYVHKAGGF
FT                 EMRNWISNSPEVLNQVSDNTPSKQVTEKNLTEERVLGLIWDHKKDIFTYNL
FT                 KFSKSHFELLNNLRRPTKREILKITMSIFDPLGFLSNLLISNKILLQAIWD
FT                 SGIHWDDYITDDQFQIWKELCSSLNKINDFCIPRQLTTLIISQCNVQLHIF
FT                 CDASKYAYASCAYLRFECNGQIETTLISAKSRVAPLKPMSIPRLELQGTLL
FT                 GARLSKAIKETLNLRIDSTFMWTDSEIVLYWLKTSSKRFKTFVAQRLGEIQ
FT                 ELTNSSEWRHVPSKLNPADKATKISSFDFSSNELWLIGPPFLRKNQDLWPL
FT                 GKISLRPDSSDDSDKEFVNLTTIQKQSITLPDVSRFSKWMRFLRATAWVLR
FT                 YLTKLRPNLTIPINNELTATELSKAEKLILLSIQQDCYYQEIGKLKCNEPV
FT                 STSSSLNNLPLFLSSDNLLRLRGRLNNLSDEEMSIDSKNPIILSRDHPITK
FT                 LLVQYYHVENCHMGTETVIANIRQRFWITKCRSTVKNIIRNCQQCKNKKAR
FT                 PQAPLMGQLPSCRIKPTERAFLKVGIDYFGPIEVTQNRSHVKRYGVIFTCM
FT                 TTRAVHLEIAEDLSCNAFMHVFRQFGCRRGFPTELYSDNGTNFRRADKDIK
FT                 EIIKEWPNDQFTQFLTTKGCTWYFNPPLSPHMGGAWERLIQSVKKYLGXLL
FT                 RERQVLESIXXKLCFVRSSLPAIVPSHGRSLGEAHTVGQEIFRXSIKGETS
FT                 PREHXXKTLFCEIEFMINSRPLLIVPSDSMSEPLTPNDLLIGSNYRESFYT
FT                 DTNDGDLRLLNMWKSSQRLADIFWLKWKKEYRQFLIYSRKWTKDSNVLKEG
FT                 DVVLLMESDLPRNVWPKGMIVKTYPSNDGRVRIVDVKVKDHIYKRPAVKII
FT                 KLDVRTDTL"
XX
SQ   Sequence 5674 BP; 1992 A; 1098 C; 1094 G; 1487 T; 3 other;
     aatggtcctt cttagcctcc tgaacggcac atggattacg cgaaactaga ttgcaatttc        60
     accagccaaa atttgcaagt gtgtatgtat tgctgagtgt gatctcggac atgcacaaaa       120
     gagtctacgc acacatactt taacgacgac tagtgtgtgt gcaaatgcga aaatttggtc       180
     agcaaaactt gcaagtttgg aagtgttgtg tgtgcaactg tgaaacttgg aactagacaa       240
     acacaaccgc aaaaagatgc ctaagacacg tctcaagaag cagaggaatg acgacaatac       300
     gcccagggga atagaggaca cgccgcgacc aggcacctct gcggcgaatc tattggagat       360
     ttcaatggca acggttatgc caggcgcagc atcaacgcag aaagttccag aaaagtggga       420
     cgaagatgta cagtctaacc ggagccacca atcgcaacga tccgttaaag ctcaaaaact       480
     tcaacttcaa atggagcatc tacagaagca acaagagctg aaagctaaac ggatgcagct       540
     tgagttcgaa gagaaacagt tggaactgga gatacagatg caaatgacag aaatcgaaga       600
     agacaacagc agccaagacg accaagatga caacatcggc gatgagtaca acaacggcac       660
     caggacacgt gagtggctta agtcttctca acgaaagcaa acatacgatg atcagcctga       720
     tgacatcaat tcaaatgcta ttgttagttt catggctagg caaacaatta aacaggaact       780
     tcctttattt agtggtgacc ctttagaatg gccaattttt attgccgagt atgagaacag       840
     ttctcaagtg tgtaaattca ccgactacga aaacattaat cgcttgcgaa aagcactgac       900
     aggtcgagcc aaagaatgtg tacagtcact tctattagtg ccacaaaatg taactgagat       960
     aattgacata ttaagaaatc gattcggaga ctgtagtcat gtcgtgaaaa tgatgataga      1020
     taaaattaga acttttcctg taatcaaaga ggataaatat gatagactcg tcacttttta      1080
     tgatatgatt acaaatctca ttcaaacatt actgtccttc aatgatattg atcagattcg      1140
     taacaacttg ctgtttgaag aaattctaga aaaaattcag gtttctcaaa gaatcgcatt      1200
     cattaaacat tttcaaaaaa taaagtctga cgaccctaaa attatagtat ttcacgaatg      1260
     gttaggtcaa accataaaag cagcgacaat gctcggattc ggtcagaata aatcaaaaga      1320
     cacaacatta acagtctcaa gtccagtcaa gacatttgaa aaatccaaat actattgtaa      1380
     ctattgtaag tctactgatc atcacataac ggattgtcct aagtttaaat acttgagtgt      1440
     cgacaagcgt tgggaattca catctcacaa taagttatgt atatcttgtc tgggtagaaa      1500
     tcacattatg aaagactgca aacgcaaaaa gacttgtagg gcagcaaatt gtaagtttaa      1560
     ccacaatttt ttgttgcata aagacaaaga caacacagca agcgcctccc ttgatatgcc      1620
     tagtaatcct gaccaaaaca agacaattcc cgacatgaac tgcaacatta atttcggttg      1680
     taacaaagta ttactaaagg tcattccagt cacactaata ggtccacaaa aagcaatcga      1740
     gacatacgct ttacttgacg aagcctcgac aatttcattg atcgatgaac aactagcaac      1800
     tgacctacaa ctagatggac cgactagtcc tttaaagatg cagtggacaa ataacgaggt      1860
     gtatgaacaa gcgaactcaa aagtagttag tgtgggtatc cgaggtaaag aacagacttc      1920
     caaagtattt actcttcgaa aagttaagac cgtatcatgc ctaaatctac ccctacaaac      1980
     cctttcaata agcgacatgt ctgagaccta cgagttcttg aaagactttt ccttttgctc      2040
     ctaccaaaat gcgcatccaa agattttgat tggtcaagac aattggtcaa tcatagtatc      2100
     tcggaaattg aaatatcaat catttcaagg acctgtcgct agcaaaacgg cgctgggttg      2160
     ggttgtacat ggaacagtgg gaatgattag agaaattcca gatagaaatt attcatgcca      2220
     tgtattcaat tgcgtaggtt acgacaaccc taacgatgac ctggacattc tacacaatct      2280
     ggttaaatcc tattggtcca ttgagaatga gttattaaca cctcatgact ttccgacatc      2340
     acttgacgac agaagatgtt tggaaattgt tgacaaaacc ctcaaacgaa tcgatgacag      2400
     atttcaatgt ggtctatttt ggaaaagtga cgacattaaa ctacctgaaa gttacaaaaa      2460
     tgcatacgct agattgttgt tatgcgaaag aaaaatggac aaaaacccgg aatacggcaa      2520
     gaaatataaa caaacctttg actcctacat acaaaatagg tatatgaaga aactgacttc      2580
     tttagagaaa actaagatca ctcccttgac ctactatttg ccacactttg gagttcttaa      2640
     tagcaacaag ccagacaagc ttagaatagt tttcgacgcg gcctccaaaa gccatggtta      2700
     ttgtcttaat gatttccttt tgccaggtcc agatctatat agccaattgt cagcagtcct      2760
     actgaatttt agagaacaca aaattgcatt tgtcggagat atcaaagaga tgtttctcca      2820
     aataaaagta caggagtcag accgttgcgc acaaagaatc ctatggcgag gcgacaaccg      2880
     acaatccgaa ccggacgtgt acgaaataca agttctattt tttggcgcta aatgtagccc      2940
     aagtatcgcc caacaggtca gaaacagaaa cgccttagat tttcaaaacg actatgacca      3000
     agcctgtagg gacatagtaa caaaacatta catggatgac tatttgggag gagctccaga      3060
     cattaataca gccgtaaaat taatcaagga cgtaacgtat gtacacaagg caggtggatt      3120
     cgaaatgcga aattggatat ctaattctcc agaagtttta aatcaggtat cagacaacac      3180
     tccatcgaaa caagtcacag aaaagaattt aaccgaagag agagttctag gtttaatttg      3240
     ggatcataaa aaagacatat tcacgtacaa tttaaaattt tctaagtccc attttgaact      3300
     tcttaacaat ctcagacgac caactaagcg agaaatatta aaaataacta tgtccatttt      3360
     tgatccctta gggtttcttt caaacctttt aatatcaaat aaaatccttc tacaagccat      3420
     ttgggatagc ggaatccatt gggacgatta cattacagac gatcaatttc aaatatggaa      3480
     ggaattgtgt agcagcttga ataaaataaa cgatttttgt attccaaggc agttaactac      3540
     gcttatcatt agtcagtgta acgttcagtt acatatattt tgcgatgcat caaaatacgc      3600
     atacgcatct tgcgcgtact tacgtttcga gtgtaacggc caaatagaaa ccaccctgat      3660
     ttcagctaag tcgcgagtag cgccacttaa accaatgtca attcctagac tagagcttca      3720
     aggaacatta ctaggagcta ggctaagcaa agctattaaa gaaacactca atctcagaat      3780
     agactcaact ttcatgtgga cagattcgga gatagtccta tactggctga aaacgagcag      3840
     caagaggttc aagacttttg tggctcagcg cttgggagag atacaagaat tgacaaattc      3900
     aagcgaatgg cgacatgtac cctcaaaact gaaccccgct gacaaagcaa caaagatctc      3960
     atccttcgac ttctcatcaa atgagttatg gctgatagga ccgccattcc ttagaaaaaa      4020
     tcaagatctg tggccattag gtaaaatctc tctaagacca gacagttctg atgatagcga      4080
     taaagaattc gtaaatctca ctaccattca aaagcagtca attactttac cggacgtttc      4140
     aaggttctcc aaatggatga gattcttaag agcaacagca tgggttttga gatacttgac      4200
     aaagctaaga ccaaatttga caatccctat caataatgag ctaacagcca cagaactttc      4260
     caaagcggaa aaattaatct tacttagcat acaacaagac tgttattatc aggaaattgg      4320
     aaaactcaaa tgtaatgaac ctgtatcaac ttcaagcagt ctgaataatc tacccttatt      4380
     tttatctagc gataatctgt taagactcag aggcagacta aataatttaa gtgatgagga      4440
     gatgagtatc gactctaaaa atccgattat cttaagcaga gatcatccaa tcactaaatt      4500
     actcgttcag tactatcacg tcgaaaattg tcatatggga accgaaactg taattgccaa      4560
     tatccgccaa aggttttgga ttacaaaatg tagaagtaca gtaaagaaca ttattcgaaa      4620
     ttgtcagcaa tgtaaaaaca aaaaagccag accgcaagcc cctttaatgg gccaacttcc      4680
     aagttgccgt ataaagccaa ccgaaagagc ctttttgaaa gtaggtattg attattttgg      4740
     gcctatagag gttacacaaa atagaagcca tgtaaagcgt tacggtgtta ttttcacctg      4800
     catgacaaca cgagcagttc atcttgagat tgctgaagac ctatcctgca atgcgtttat      4860
     gcatgtattt agacaatttg gttgtaggcg aggatttccg acagaattat attcagacaa      4920
     cggaactaat ttcagacgcg ctgacaagga cataaaagaa attataaaag agtggccaaa      4980
     tgaccagttt actcagtttt taaccacgaa aggttgcact tggtacttta acccgccatt      5040
     gtcccctcac atgggaggag cttgggagag gctcatacag tcggtcaaga aatatttagg      5100
     akttctatta agggagagac aagtcctaga gagcatastc waaaaacttt gttttgtgag      5160
     atcgagttta tgattaacag tagaccactt ttgattgttc cttcagactc catgtcggaa      5220
     ccattaacgc caaatgactt gttaattggt tccaattatc gcgaatcgtt ttacactgac      5280
     accaatgatg gtgatttgag actgttaaat atgtggaaat cgtcacaaag acttgcagac      5340
     attttttggt taaaatggaa aaaagaatat agacaatttc taatatacag tcgtaaatgg      5400
     accaaagata gtaatgtttt aaaagaaggt gatgtagttt tattgatgga atccgacctt      5460
     ccgagaaatg tttggccaaa aggcatgatt gtcaaaacgt atccatcaaa tgatgggcgt      5520
     gtgagaattg ttgatgtaaa agttaaagac catatatata agagacctgc tgtaaaaata      5580
     attaaattag atgtaagaac agatacattg taaactttaa gtattgccgt cgtctatacc      5640
     taattttcca cgactccaat acttgggagg agga                                  5674
//
ID   BEL-1_DTa-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   28-JUL-2011 (Rel. 17.08, Created)
DT   28-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DTa_;
KW   BEL-1_DTa-I; BEL-1_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-352
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1586-1586 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 352 BP; 128 A; 62 C; 62 G; 100 T; 0 other;
     tgttgatgca ttatattaat ttgaatttga tacgttgatg ctatgttatt gttttatgta        60
     agaaaaatac tggaatgtta tagaaatatc gtatgtatca cctaatgaaa gatggtaaca       120
     ctagtcggca aaaagagacg ccacttgcaa aaaaaaattc ttgaagtaca ctacgcaaaa       180
     gctcaaatat gttgcgaaag atctaaataa agtgatcagc acataaaagg tgttttcttc       240
     aaacaaacca atcgacgact acaacgacag tgacttgtgt gggatagaat tcggtctttc       300
     gagccccata atccctaatc ggtataaccc ttaccaggta attaccccaa ca               352
//
ID   BEL-1_DVir-I repbase;    DNA;    INV; 5912 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DVir_;
KW   BEL-1_DVir-LTR; BEL-1_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5912
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1773-1773 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4935-5525] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..3771
FT                 /product="BEL-1_DVir-I_1p"
FT                 /translation="MTQRSPRKSPRLNDGQEIATTASGTQTKRTSRMVSTV
FT                 SQMQVPAVSAPQSPSTVDVGTSVQPAGTVAAGVSARASTLTGAPSPSTQLS
FT                 STQVMDLIKRVAVLEHELQRSKTGQAHVSTVTDPVKLSSAGMSGTANLPPS
FT                 LIGAESGEPSSSGSLSETATMSVVPNSKVSLSETAILSGTTILSRSPSLSE
FT                 ALPTSLSGNLGTQLQTVERATVMDNCSTTSSRSTPYCFAGIAQPTLSYTPA
FT                 QENQQAIILEPTQATGNFAWTTPRNDVCLPRKLPDLPEFGGQPEDWPIFFC
FT                 AFTETTLAYNCTNLENNQRLLKALKGEARDTVKSLLIHPRNVNNVIEQLRF
FT                 RYGRPEQLIRSQLISIREVQPIQEHSIAKIVPYATRVSNLAAFLQSANGEQ
FT                 HLANPTLMEDLVAKLPPSKRVEWARHAATIRPFPTVVHFSAWLTDYANVVC
FT                 TIVDVDSKEQRRRVLHASIDQNNEGRHRGRTKQCPICNGQHAVRDCNEFNL
FT                 ASPLKRWTVVKRHRLCFSCLRVGHMARVCNRANECQVNGCRKRHHRLLHYH
FT                 DAMSHNAPQPAGDRVMNTGRMPQPADPHTRAPQPADAQSTQQRNLSCVDSD
FT                 GERLLFRILPVTLHGANKRIDTYALLDEGSSVTMIDDELLRDLDIKGERRQ
FT                 LNIQWFGGRATREPTTVVSMEVSGADKRKRHVLRNVYAVSNLSLPMQSLHQ
FT                 RDVQMWGNGARLPMKPYRGAVPKLLIGLDHAHLGLPMQTKRFAPQGPYAAA
FT                 TELGWVVFGPARDQPTATSSKSCLLAVSQEDAIQKMVNDYFDIENFGVKLT
FT                 PPVAASDDARAQRILEDTTVKIGERYQTGLLWNRDNVELPRSYDMAYKRLV
FT                 NIERKMKRNDQFKQAYMKIMDDYVHKGYARRLKQHEVALANSDKLWYLPHF
FT                 GVENPNKPGKIRLVFDAAAKVGDISLNSALSKGPQHYKSLPAVLFHFREGA
FT                 VGVCGDIREMFHQVLIRPQDRCAQRFLWRNGDDRREPDVYEMRVMTFGAAC
FT                 SPSAAHYVKTLNALQFQDSDPRAVKAILECHYVDDYVDSFDSEGEAITIST
FT                 RIREIHANAGFELCQFTSSSPTVADALGQHGTARSIGWGEAEEKILGMCWQ
FT                 PATDDFKFNMKYHKVPRCVLNLERIPTKREFLSLIMSTFDPLGFLSCLMIT
FT                 GKLLMREIWRRNVQWDEPYQMRSPGPLANGFRI"
FT   CDS           3771..5912
FT                 /product="BEL-1_DVir-I_2p"
FT                 /translation="MNNVEGFRSSRHYFGPTPVRAIQLHVFVDASQSAFAA
FT                 VTYLRVTYDNNDVRVCFVCAKTKCAPMKTMSIPRLELQAAVLGTRLMDTVK
FT                 KEHSIAISDAILWTDSKTVLRWIGSTHRRYKQFVGNRVGEILESTKVSQWR
FT                 WVPTAENAADDATRPHCHVDLSQRSRWLDGPTFLRQPESSWPQSEPGTEHS
FT                 SYEDEEEMPSEFALVAANSFFISFQRFSSYSRLVRTTAWVLRFTRWSRGQR
FT                 TELERFGLTATECENAENLLIRRAQCEAFPDEVRASYNEESVGHRSDIRGL
FT                 APYLDDNGVLRAYGRIDAALCIPHSARRPIILSHRHALTELIVYHYHVKMK
FT                 HQNVDATIGDIRTRFWITKLRRLLRTVISGCSVCKLHRAQPAPPIMGPLPE
FT                 DRLEANGWPFKFTGLDYFGPLLVTIGRRKEKRWVALFTCLTTRAIHLELAH
FT                 DLSTDSCIIVIRNFLCRRGPVLRLRSDNGKNFVGANREAKRLIDVFEPEKI
FT                 QGELSSRGIEWIFNCPANPAEGGAWERMVQCVKRVLRHTVKEVAPKQHVLE
FT                 SFLIEAENVVNSRPLTHLPVSVDQEAPLTPNDLLKGVANLPDTPAIHEQPN
FT                 ERCVTRKQWRMARLLRDRFWKRWVLEYLPTLVRRVKWCARVEPIRHGDMVF
FT                 ICDPAVPRREWRRGIVEELYPGPDGVPRRASIRVADNNRVRLMTRPVAKLA
FT                 ILDVSEAGPSRGRG"
XX
SQ   Sequence 5912 BP; 1639 A; 1369 C; 1637 G; 1267 T; 0 other;
     tgatctttta ttcgcagttc ttattgtaag aaactgcaag ggcgacttgc gctgaagaca        60
     agacgtggtg taacattggt gttacagtgt gtgtacatag acacagcaca ggcagggcct       120
     ccacccagtt atagagtcac cattagtacg cagccagcgt aaaatatagc agaaaccatc       180
     tccgagctga gtaggatgac acaacggtca cccaggaaaa gcccacgctt aaacgatggc       240
     caggagatag ctaccacggc gagtgggacg cagacaaagc ggacaagtag aatggtgagc       300
     actgtatcac aaatgcaagt tcccgctgtt agcgcaccac aaagccccag caccgtggat       360
     gtgggcacaa gtgtacaacc tgccggcact gtggccgcgg gagtgagtgc acgagccagc       420
     acattgacag gagcgccaag cccaagcacg caactctcaa gtacgcaagt catggatttg       480
     ataaagagag tcgctgtgct agagcacgag ttgcagaggt caaaaactgg tcaagcacat       540
     gtgagtacag ttactgatcc cgttaagttg agtagtgctg gcatgagtgg tacagctaac       600
     ctgccgccat ctttgatcgg agcggagagc ggagagccat cgtcgagtgg aagtttgagt       660
     gaaactgcaa ctatgagtgt agtcccaaat tcaaaagtaa gtttgagtga aactgcaatt       720
     ttgagtggaa ctaccatttt gagcagatcg ccatctttga gtgaggcact gcctacgtca       780
     ttgagtggaa atttgggaac acagttgcaa acggtagaac gggctacagt tatggataac       840
     tgctctacaa cgtcaagccg ctcgacgcca tattgctttg caggcattgc acagccaacg       900
     ctcagctaca ctccggcaca ggagaaccaa caagcgataa ttttggagcc aacgcaggca       960
     actgggaact tcgcatggac gactcccagg aacgatgtat gcctgccacg caaattacca      1020
     gatctacccg agtttggagg tcaacctgag gattggccta tattcttctg cgcgtttacg      1080
     gaaacaactt tggcgtacaa ctgtacaaat ctggagaata accagcgatt gttgaaggca      1140
     ctcaaaggcg aagcacgtga cactgtgaag tcgttgctca tacatcccag gaatgtgaac      1200
     aacgtaattg aacaattacg ttttagatac ggccgcccag aacagctaat acgcagccag      1260
     ctaattagta ttcgagaggt gcagccaatt caggagcaca gcatagctaa aatcgtgcca      1320
     tatgctacac gcgtaagtaa ccttgccgcc tttctacaat cggctaacgg ggaacagcat      1380
     ttagcgaatc ctacactgat ggaggatttg gtcgctaaac taccaccaag caagagggtg      1440
     gaatgggcca gacatgcagc tacgattagg cctttcccga cggtcgtaca ttttagcgcg      1500
     tggttaacgg actacgccaa tgtggtatgt acgattgtgg acgtcgatag taaggagcaa      1560
     aggcgtagag tgctgcatgc cagcattgac cagaataatg aagggcgtca ccgaggtcgc      1620
     accaaacagt gtccaatctg taatggacaa cacgcagtca gggactgcaa cgagtttaac      1680
     ttagcctctc cgctaaagag gtggacagtc gtaaaaaggc accggctttg tttttcgtgt      1740
     ttacgagttg gccacatggc aagagtctgc aatagggcca acgaatgcca agttaatgga      1800
     tgccggaaga gacatcatcg actcttacat tatcatgatg ctatgagtca caatgcaccg      1860
     caaccagcag gtgatagagt gatgaatact ggacggatgc cgcagccagc ggatcctcac      1920
     acaagggcac cgcagccagc ggatgctcaa tcgacgcaac aaaggaactt aagttgtgtc      1980
     gattcggatg gagaacgcct actattccgc atattgccag tgacattgca cggggccaat      2040
     aagcggatcg atacgtacgc gctcctcgac gagggctcgt ctgtaacgat gatcgacgac      2100
     gagctactgc gcgatctaga tatcaaaggg gaacgcaggc aactaaatat acagtggttt      2160
     ggtggaagag caaccagaga gccgaccaca gtggtaagca tggaagttag tggagcggac      2220
     aagcgcaaac ggcatgtgtt gcgaaatgtg tacgccgtgt ccaacctcag cttaccaatg      2280
     caaagcctgc atcaacgtga cgtccaaatg tggggcaacg gtgcacgtct tccaatgaaa      2340
     ccgtatcgcg gggcggtacc aaaacttctg attggacttg accatgcgca tcttggactg      2400
     ccaatgcaaa caaaaaggtt tgcaccacag ggaccatatg ccgcagccac cgaacttgga      2460
     tgggtggttt ttgggccggc aagagatcaa ccgacggcaa cgtcatcaaa gtcatgcctc      2520
     ctagcagtgt cgcaggagga tgcaatccaa aagatggtaa acgactattt tgatatcgaa      2580
     aacttcgggg tgaagcttac gccaccagtc gcagccagcg acgatgcacg agcacagagg      2640
     atactcgaag acaccacggt gaaaatagga gaacgttacc agacgggttt attatggaac      2700
     cgtgataatg ttgagttgcc acgaagctat gatatggcat acaaaagatt ggtcaacatt      2760
     gagagaaaga tgaagcgtaa cgatcagttt aaacaagcct atatgaaaat tatggacgat      2820
     tatgttcaca aaggatatgc tcgacgattg aagcagcatg aggtcgcttt agccaacagc      2880
     gacaaacttt ggtatcttcc gcactttgga gttgaaaatc caaataagcc cggtaagata      2940
     agactggtgt tcgacgcggc agcaaaggtt ggtgatattt cattgaattc ggcattatcc      3000
     aaggggccgc agcactataa gtcgctgccg gctgttctct tccattttcg ggaaggtgcc      3060
     gttggcgttt gtggagacat ccgagagatg ttccatcaag tgttgattcg accgcaggac      3120
     agatgcgccc agcgattcct gtggcgaaac ggcgatgatc gccgggagcc tgatgtttat      3180
     gagatgaggg taatgacgtt tggagcagca tgttcgccaa gcgccgcaca ctatgtgaag      3240
     accttgaatg ccctgcagtt tcaggattca gaccctcgcg cggttaaagc tattcttgaa      3300
     tgccactatg tggacgacta tgtggatagt tttgatagtg aaggcgaagc catcaccata      3360
     tcgacaagaa taagagaaat acatgcaaat gctggattcg aattgtgcca gtttacttcc      3420
     agttcgccaa ctgtagctga cgcgctgggc caacatggga ctgcgaggag catcggatgg      3480
     ggcgaagctg aagaaaagat tctaggcatg tgttggcaac cagccacgga cgatttcaaa      3540
     ttcaacatga agtaccacaa agtaccccga tgtgtgctaa atttggagcg aattcctacg      3600
     aagagggaat tcttgagctt gatcatgtca acattcgatc ctctgggatt tcttagctgc      3660
     ctcatgataa ctggaaagtt actaatgcgt gagatttggc gacgaaatgt gcaatgggat      3720
     gaaccttacc agatgagatc gcccgggcct ttagcaaatg gcttcaggat atgaacaacg      3780
     tggaaggatt tcggagctcg cgccattact tcggcccaac acctgtgcgg gcaatacagc      3840
     tgcacgtttt tgtcgatgct agccagtcag cattcgcagc cgtgacttac ttgagggtca      3900
     cctacgacaa caacgacgtg cgagtatgct tcgtatgtgc caagacgaag tgtgccccaa      3960
     tgaagacgat gtcaattcca cgactggaat tgcaagcagc cgtgttagga acgaggctga      4020
     tggacactgt caaaaaggag cacagtatag cgatcagcga cgctatacta tggactgact      4080
     ccaaaactgt gctgcgttgg ataggcagca cccaccgtcg atataagcag ttcgtcggaa      4140
     atcgagtggg agaaattttg gagtcaacaa aggtttccca atggagatgg gtacctactg      4200
     ctgaaaatgc agcagacgac gcaacgaggc cgcattgcca cgtagacctc agccaacggt      4260
     cacgatggtt agacgggcca acatttttgc ggcagccaga aagcagctgg ccgcagtccg      4320
     aaccgggcac ggaacactca tcctacgaag atgaagaaga gatgccgagt gaatttgcct      4380
     tagttgcagc aaatagcttt ttcatttcat ttcagagatt ctctagctac agtcggctgg      4440
     tgaggacgac ggcttgggtt ttaaggttca cgcgctggag ccgtggacag aggactgagc      4500
     ttgagagatt cggcctcacc gcgacggagt gtgagaacgc tgagaacttg ctgatacggc      4560
     gagcgcaatg cgaagcgttc cctgacgagg ttcgagcctc atacaatgaa gaatcagtcg      4620
     gtcatcgaag cgacataaga gggctggcgc catacttgga tgacaatgga gtcttgcgtg      4680
     cgtatggcag gatcgatgcc gcactgtgta taccgcatag tgcgagaagg ccaataatat      4740
     tgtcacaccg gcacgcactg acggaactga ttgtgtatca ctaccatgtg aaaatgaagc      4800
     atcaaaacgt ggatgcaacg ataggcgaca tcaggaccag attttggata acaaagctgc      4860
     gtcgactgtt gcgtacagta atatctggat gtagtgtgtg caaactacat agagcgcagc      4920
     cagcgccacc tataatgggt cctttgccag aggacagact ggaggccaat ggatggccat      4980
     ttaagtttac gggtctggac tattttggac cactccttgt gacgatcgga cgtcgaaagg      5040
     aaaagagatg ggtcgccttg tttacgtgtc tgacgacaag ggccatacat ttggagctgg      5100
     cacatgacct gtcaactgat tcctgtataa tcgtaatcag gaactttctt tgccgtcgcg      5160
     gacctgtact gaggttgcgc agtgacaacg gaaagaactt tgttggggcc aacagagaag      5220
     ccaaaaggct aatagatgta ttcgagccgg agaagattca gggtgagcta tcttctagag      5280
     gcattgaatg gatcttcaac tgcccagcga acccagctga agggggagcc tgggaaagga      5340
     tggtgcagtg tgtcaagaga gtgctacgcc acacagtaaa ggaagtggca ccaaagcaac      5400
     acgtactgga gagtttcctg attgaggccg agaacgttgt gaattctcgc ccgcttaccc      5460
     acttgccggt gtctgtggac caggaagccc ccctaacacc gaacgatcta ctcaaaggag      5520
     tggccaatct gcctgacacg cccgctatcc acgagcagcc gaacgagaga tgcgtcacga      5580
     ggaagcagtg gcgcatggcg cggctgttac gagaccgttt ttggaagcgg tgggtcttag      5640
     agtacctgcc tacacttgtg cgacgcgtga aatggtgtgc gcgcgttgag ccgatacgcc      5700
     atggtgatat ggtgtttata tgcgacccgg ccgtgccacg cagagagtgg cgaaggggca      5760
     tagtggagga gctctaccct ggaccagatg gagtgcctcg acgcgccagc atccgcgtgg      5820
     cggacaacaa ccgagtgcga ctgatgactc gtcccgtggc taaactagcc atactggatg      5880
     tgagtgaagc agggccttca cgggggcggg ga                                    5912
//
ID   BEL-1_DVir-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DVir_;
KW   BEL-1_DVir-I; BEL-1_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-352
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1774-1774 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 352 BP; 95 A; 68 C; 80 G; 109 T; 0 other;
     tgttgcggga cgaattaatt tatcgattgt ttagtattaa gtatattctg aaagtatgta        60
     tatttgccct ccgaatgtac gggcacactg tatttggctt gttgccgcca ttacttaaat       120
     gttaagctca ttattgtcgt gagttcgaag gccgtaggag gaaagactgc ggtaagattc       180
     cgagggaata tatatctaag ttctaaccta tgtaatccgt ttagaataaa acacttgcac       240
     tagcacgttt tgcattacgc tgtctctagt aacatcggag taacatggcc gggggccagg       300
     cgtaaacttg cagtgttcaa attgcaactc caccttcatt tggcacgcga ca               352
//
ID   BEL-1_DWil-I repbase;    DNA;    INV; 9025 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DWil_;
KW   BEL-1_DWil-LTR; BEL-1_DWil-I.
XX
NM   BEL-1_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-9025
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2391..7910
FT                 /product="BEL-1_DWil-I_1p"
FT                 /translation="MSTEPSKTAPKSNGLSSPSSTPEKVRPPITPATVKRT
FT                 DISRKFSSVRSRSESPRSRPSSSSLPQGRRFSVKDSSEHKGRSKLSTQTQI
FT                 PHVVVTHCSDAPVTRSVSQQRREHSRMSLSDFILACDALTLFEARESEALT
FT                 SEVPLFSIKMHLEQLKSLWSTVEMEHSRCHKALTVQTDEESLANISRIKAK
FT                 HEYAYAAYVRCGTLFGERIEQLSAQMTSLMRQPTAPSRPAGHRVPPCEVET
FT                 FDGDSLAWPTFRDLFAAIYIANPYLSQVEKLYHLNTKTRGEARTIVAKSPL
FT                 TNEGFQAAWENLTARYENSRLLVMTQARQLLQIPAVAQESGKSLRELQTAF
FT                 QGGLTALERSGVSTENWDVLLIAICTSKLPKATILLWEQSVPNKTVVSNWS
FT                 DLNQFLTDRYRVLDATEEHKSGPSVQAIPFGPRKSSATMKVQAFPAKAQLK
FT                 PASCKLCHRENHPIRLCPSFLDMPVHRRLETIRQQGLCLNCFARGHQVKGC
FT                 SSAHNCHTCKERHHTLLHPSDVSVSSPSAAQVPPSSATEGPSTSNQLTNAQ
FT                 SYFASTPGRGLLGTAIVTLHHRGVDHHIRALIDSGADSTFLSERVFSMVQP
FT                 PFYPVDAAVTGMGQSDGGCADKVCLLMLSPPCDRLNKIEVSALVVSKLSGA
FT                 IPTAPFLNTVPTQCLDRPLADPYYNKPAPIDMIIGVDLFPHILGERIKKDI
FT                 GEFVGLETIFGWVLCGAIMPDPPVSRSVFAAQTRVRPEAKLDVLLTKFWEV
FT                 EDLPAKPEKEDDVFCERNFQETTQRGKDGRYVVSLPFKGPNSVDLGHSRPI
FT                 ALAQFLRNEARLLKDPVLKTQYDAIIQEYEELGHMIRVTPPQGGKNFYLPH
FT                 HAVFKPDSTTTKVRVVFNASSPSTQGVSLNDVLHTGPTLQADLTLQVLKWR
FT                 FFQFVFNADITQMYRQIRVDPRHTPFQRILYRNRCGNIQDYELQTVTFGVN
FT                 CAPFLAIRVLLQLAQDVQAMYPQASEILRNYMYVDDVLAGAHTEADARLAI
FT                 RELQATLQSAGFPLRKWTSNKKEVLQAIPREHLLREDFLELEDASTAKTLG
FT                 IRWQAAEDVFFFTVADPPLKESITKRQVLSHIAKLFDPAGWLAPFVIRAKI
FT                 FMQQIWLTELGWDDVLPPLLLQQWHEFLQDYPGLSRLRIPRWLNTSDKLSW
FT                 ELHGFCDASQKAYGAALYVRVRCGDQVDVHLLTAKTRVAPVKTVSLPRLEL
FT                 CGAVLLADLWASIVPELPIPPATSQFWTDSTIVLAWLNKPPCSWSTFVANR
FT                 VSSISKSTSGQSWSHVRSEDNPADLASRGVSAAELSASRLWWHGPDWLQRA
FT                 PEYWPTPHNELPDTQLEQRVQCHTTATTLLEDVSERFSDYGRALRVIAYIL
FT                 RFATKRISTPSTVHLTNDELLSAERALIRTSQRREYLAEIRALGEGRPLPS
FT                 SSTLLNLNPFLDQHGLLRACGRLRAAESLRYDERHPILLPYSTHFTRLLVE
FT                 FAHRITLHGGNQLMVRYLRTKFWIPRIKNMVKSHLKGCKVCIVHRRRLQTQ
FT                 MMGDLPRERITYSRPFTHTGIDFAGPFEIKNYTGRACLITKGYVCVFVCFS
FT                 TKAIHLEATSDLTTERFLAAFSRFVARRQCPQRIYSDNGKTFVGASKALEQ
FT                 DFLNATKLDIMKAFPQHILSWQFIPPSAPHMGGLWEAGVKSFKTLFYKSSS
FT                 TVKYTFEELSTLLCRIEACLNSRPISPMSEDPEDLLALSPGHFLIGGPLLS
FT                 IAEPEILVEPMSLINRWQRLKAIQQAFCRRWKSEYLKELHKRNKWKSPTRS
FT                 IQTGDLVIVSEDHLPSNEWRLGRIERTLPGADGLVRVADVTTARGSIRRPV
FT                 AKLILLQDSRSPEPKTVS"
FT   CDS           7941..8945
FT                 /product="BEL-1_DWil-I_2p"
FT                 /translation="MSSSPCMLFVPAHRLIHSPLRNFFRYSSFSSPLHSDM
FT                 APTRLPHHRSKRAAPQGTNVYRCRVCRGVHALRQCQRFLNLRGEKRLRAVL
FT                 INKYCPNCLAHEHSSDACRTRHGCRRCGQRHHTLLHMADQTPRQRASARRR
FT                 SQSPPSGRAAPPLQPCSRSSSDRSASPEGAPEISLSSLLHARTTTVLPTAV
FT                 LRLGNGSKSFETRVLLDACAAESRINRSFARSLGLAVTKVGVDQACTAVLE
FT                 SRSDETFRRNVIFRVEEDLLIRTPIREVAAPVREKFATLILADPYFYRPAS
FT                 VSVVLGADLYPEVIQPGCVPGHSGTPAAQSTVFGWVVSGSCGI"
XX
SQ   Sequence 9025 BP; 2134 A; 2588 C; 2001 G; 2302 T; 0 other;
     ttggtccttc gagccggata tccttccgct cctccagctt gcatcggcgg aattcctgat        60
     aagtacaaaa tttcattatt cgtttcattt gcccctacat actaataaaa gtgtgaggtt       120
     ttcccgcttc tccatagcga cctacacact tttacatatt gtatgtacat acctgacctg       180
     ttccaagggt ccatggtagt tcctaatcct tagcgtgttt gtccaacgtt ctcgttttcc       240
     attacatttc catttcttta tttatatttt tccccgcact tgtccaaatc cacctctttt       300
     acatatgcat tcacatgtac atgtaatttc cacagctgtt tgccaagtcc gcgtaaaggg       360
     ttaaaaaaca aaaaaaatat taaagtgtta taaaaaatag aaaaaaaaat aataatccaa       420
     gtgttcaccg cgttttctta tgtgttgaaa taattatttt taatgccaaa ctaattgccg       480
     cacgcgcgta tctacgtaca tacacacatc gtcatctgtt gatgtacgcg catatgtaca       540
     tatccatgta catatgtata atcccttcac acatttacca caacacaaaa ggccaaaaag       600
     tattgttttt tttttaatag cacttaacgt atgcaccgcg atttcttgcg cgttcgaatt       660
     aggtgcgaaa ttaattcccc acgcgcgtct ttggaaaccg gtgcacttgc ttacatatgt       720
     acatacatac ttacatagtc atacattgca catatgtatg tacatatcca caacacataa       780
     tccatttcgg tgtcgcgcat tgatttaaca ccaccccacc tccaattaaa tgacaattac       840
     ttacgttatt ttttttgttg tgaacaacgc gtgtgcacat atatctatat actcacctgt       900
     gtacttatgc atgtacgtac atacatagat caagcatttg tccacatgca ttgatcgttt       960
     gttttgtttg ccttcgcgca caacactcgc ggcgtgtaaa agcgttcttt tgttattggt      1020
     tttctccctt tttgcacaaa aacaaaaaaa attattaaca tatttaaaca acaacatcaa      1080
     aatataaaca acggccgaca gctgttttcg gagtagtggt gacacgtgag tcgagtcgtg      1140
     atatcgatag gcggctcaag cgcgccaagt tcaaatcaca ttatttccga ttcccttttt      1200
     tttcgcctaa ttacatatcc gcccatattt ataactaaat acatatatat ttttccagca      1260
     ctatcgtgcc cacatttata tatccgtcca tattcataaa ttatatatat ataattttct      1320
     ccggccagta ttttgcgccc atatatatat ccgcccatat ttataaataa atacatatat      1380
     atattttttc cagcactatc gggcccatat ttatatatcc attcatattc aaaaattata      1440
     aatatatttt ttccggccag tattttgcgc acatatatat atccgcccat atttataaat      1500
     aaatacatat atattttttc cagcactatc gggcccatat ttatatatcc attcatattc      1560
     aaaaattata aatatatttt ttccggccag ccttttgcgc tcatatatat atccgcccat      1620
     atttataaat aaatacatat atatattttt tccagcacta tcgggcccat atttatatat      1680
     ccattcgtat tcaaaaatta taaatatatt tttttccggc cagccgtttg cgctcatata      1740
     tatatccacc catatttata aataaataca tatatatttt tttccagcac tatcgggccc      1800
     atatttatat atccattcat actcaaaaat tataaatata ttttttccgg ccagcctttt      1860
     gcgctcatat atatatccgc ccatatttat aaataaatac atatatatat tttttccagc      1920
     actatcgggc ccatatttat acatccgtcc atatttataa attatatata taattttttc      1980
     cggccagtat tgtgcgcaca tatatatatc cagatccaga tttatacaaa aacgtatttt      2040
     gttttatcct atacatcctt atttatatat ttcctccgtg ttttgtttta tacgtactcc      2100
     cagcgttact tacgaatcca tagaaacttg ttttgtaatc atttagcttg tctacgtgca      2160
     agttttgatc cgcactcgtg cgttcgtata ttgttccgca tctatcccca ttaaaagggc      2220
     tccgtttccg agccgcacgc gagataattc tcccgcaatc ctgcggtgca cagtgagaaa      2280
     gctcttgcgt cctcatacag tccacttctc atttcctcaa attttcctca tttcctcatt      2340
     ttctcaaaac ccacaaactc ggtgttcgac ggtaaggtcg tcccctgagt atgtccacgg      2400
     agccgtccaa gactgcgccg aagtctaacg gtctttcgtc tccctcttca actccggaga      2460
     aggttcggcc tccgataact ccggcgaccg tgaagcgtac ggatatttcg cgcaagttct      2520
     cgtctgttcg cagccgcagc gaatccccaa gatcccgtcc gtcttcgtcc agcctccctc      2580
     agggtcgcag attctcggtt aaagactcga gtgaacacaa aggtcgttcc aagctttcaa      2640
     cccagaccca gatcccgcac gttgttgtga cgcactgttc tgacgctccc gtcacccgat      2700
     ccgtatcaca acagcgcaga gaacactcca gaatgtccct ctccgatttc attctggcgt      2760
     gcgacgcatt gactctgttc gaagctcggg agagtgaagc tctaacttct gaagtgccct      2820
     tgttttccat taaaatgcac ttagagcagc tcaaatcgct gtggtcaact gtcgagatgg      2880
     aacactcccg ttgtcacaag gccttgacag tccaaaccga cgaggaaagc ttggcaaaca      2940
     taagccgcat caaggcgaag cacgaatacg cttatgcggc gtatgtgcga tgcgggacgt      3000
     tgtttggaga acgcatcgaa cagctctcgg cacagatgac gagtcttatg cgtcagccca      3060
     ccgctccgtc gaggccggcg gggcatagag ttcctccgtg tgaggtggag acatttgatg      3120
     gcgacagcct agcatggccc acattccgcg atttgttcgc cgccatttat atcgccaacc      3180
     cgtacttgtc acaagtggag aagctctatc acctgaacac caagacgcga ggggaagcga      3240
     gaaccatcgt agctaagtcc cccctgacga atgagggttt ccaggccgcg tgggagaacc      3300
     tcaccgcacg gtacgaaaat agccgtctgc ttgtcatgac tcaagccaga caactccttc      3360
     agattcccgc ggtggcacaa gagtcgggca aatccttgcg agagctgcag actgcgtttc      3420
     aagggggtct taccgcgctt gagcgttcgg gtgttagtac ggagaattgg gatgtcttac      3480
     ttatcgccat ctgcactagc aaattgccga aggccacaat cctcctgtgg gagcaatcag      3540
     tgccaaataa gactgtcgtc tcaaattggt ccgatttgaa ccaatttctt accgatcggt      3600
     atcgtgtcct ggatgccacc gaagaacata agtcgggccc aagtgtgcaa gccatcccct      3660
     ttggcccccg caaatcctct gcaacgatga aggtccaagc gttccccgcg aaagcccagc      3720
     tcaaaccggc ttcttgtaag ctgtgccatc gggagaatca ccctatacgg ctctgcccta      3780
     gttttcttga tatgcctgtt cacaggcggc tggaaaccat tagacagcag ggactttgtc      3840
     tgaactgttt tgcccgcggt catcaagtga agggctgctc cagtgcgcat aattgccata      3900
     cctgcaagga acgtcatcat acgctgttgc atcctagtga tgtgtccgtg tcctcgccgt      3960
     ccgctgcgca agtcccacca tccagcgcca cagagggtcc gtccacgagc aaccagctca      4020
     caaatgctca aagttatttt gcatctaccc caggcagagg cctgttaggc actgcgattg      4080
     tcactctgca ccatcgtggt gtggatcacc atattcgggc gttgatcgac tctggggccg      4140
     attcaacttt tctctccgag cgtgtcttca gcatggtcca gccccccttc tacccagtag      4200
     acgctgcggt tactggcatg ggccagagtg atggaggctg cgccgacaag gtgtgtctgc      4260
     taatgctgtc tcccccgtgt gacagactga acaagatcga ggtctccgcc ctggtcgtat      4320
     ccaaattgtc aggggccatt ccaacagctc cattccttaa tacggttccg acgcagtgcc      4380
     tcgatcgccc cctggctgac ccgtactaca acaagcccgc gcctattgac atgattatcg      4440
     gtgttgacct gtttccccac atcctcggag aacggatcaa aaaggatatt ggtgagttcg      4500
     tcgggctaga aaccatcttt ggatgggttc tgtgtggagc tatcatgcct gaccctccgg      4560
     tgtctcgatc agttttcgcg gcacagacgc gagttaggcc agaagcaaaa cttgatgtac      4620
     tcctcaccaa gttttgggag gtggaagacc ttcccgcaaa accggaaaag gaggatgacg      4680
     tattctgcga gcggaacttc caggagacca cccaaagagg aaaggacggt cgatatgttg      4740
     tgtccctacc cttcaaaggt ccgaatagcg ttgacttggg ccactcaaga ccgatcgcgc      4800
     tggctcaatt cctgcggaat gaagcacgcc ttctcaagga tcccgtccta aaaacgcagt      4860
     acgatgcgat tattcaagag tacgaggaat tgggtcacat gattcgggtg acgccgcctc      4920
     aaggtgggaa aaacttctat ctcccccatc acgcggtgtt taagcccgat agcaccacca      4980
     ctaaggtacg cgtggtattt aacgcgtcga gcccctccac acaaggcgtc agcctcaacg      5040
     atgtcttgca caccggcccc actcttcagg ccgacctcac gcttcaggta ctgaaatggc      5100
     ggttctttca attcgttttc aacgccgaca taacgcagat gtatcgacaa atccgagtcg      5160
     accccaggca tacccccttt cagcgaatcc tctaccgaaa ccgctgcggc aatattcagg      5220
     attatgagtt acaaactgtc acgtttgggg ttaactgcgc gccattcttg gcgatccgag      5280
     tccttttaca actggcacaa gacgtgcaag cgatgtatcc tcaggcgagc gaaatccttc      5340
     ggaactacat gtatgttgat gatgtccttg ccggcgctca cactgaagcc gacgcccgtc      5400
     tcgccatacg agagcttcaa gcgaccctcc aatctgcggg cttcccgctt cggaagtgga      5460
     cttccaataa gaaggaagta cttcaagcca ttccgagaga gcacctgctg cgagaggact      5520
     ttctcgagct ggaagacgcg agcactgcaa aaaccttggg catccgctgg caagctgccg      5580
     aagacgtctt cttcttcacc gtagcggacc cccccttgaa ggagtcgatc accaagaggc      5640
     aggttctgtc ccatatcgct aaactctttg accccgctgg ttggctagcc ccatttgtca      5700
     tccgagcgaa gatattcatg caacaaatct ggcttaccga actgggctgg gacgatgttc      5760
     tgccgcctct cctgctgcag caatggcacg aattcctgca ggattaccca ggcctcagtc      5820
     gactccgcat tccccgttgg ctaaacacca gcgataagct ctcgtgggag cttcatggct      5880
     tctgtgacgc gtcacagaaa gcgtatggag cagccctata tgtgcgggtt cggtgcggcg      5940
     atcaagtaga cgtccattta ttaacggcta agacccgtgt agctccagtc aaaacagtct      6000
     cgctgcctcg gctggagttg tgcggagcgg ttttgctagc cgatctctgg gcgtcgatcg      6060
     ttcctgaact cccaatccca cctgcaacct cccagttttg gaccgactct accatcgtgt      6120
     tggcttggct caataaaccc ccgtgcagtt ggtccacctt cgtggccaat cgggtatcca      6180
     gcatctccaa aagcaccagt ggccaaagct ggtcacatgt gcgctccgag gacaaccccg      6240
     ctgatctggc gagccgtggg gtctccgcgg ccgagttatc ggccagcaga ctctggtggc      6300
     atgggccgga ctggctccag cgagcccccg agtattggcc aactccccat aacgaactcc      6360
     cagacaccca gctggagcaa cgagtccagt gccacaccac cgcgaccacc ctactcgagg      6420
     acgtcagcga acgtttctcg gattatggta gggcattacg agtcatcgcg tacatcctac      6480
     gcttcgccac caaaaggatt tcgacgcctt ccacggttca cctcaccaat gacgaacttc      6540
     tctccgccga gcgcgccttg attcggacct ctcagcgtcg ggaatacctc gcggagatac      6600
     gggccctggg ggaagggcga cccctgccat catccagcac gctactcaat ctgaatccat      6660
     ttctcgatca gcatgggtta ctccgcgcct gcggacgact ccgggccgcc gagtccctcc      6720
     gatatgatga acgtcaccct attctcctcc cctatagtac tcatttcact cgcctgcttg      6780
     tcgaattcgc ccaccgcatc acgttgcatg gcggcaatca actgatggtg cggtatctgc      6840
     gcaccaaatt ctggatccca cggatcaaga acatggtgaa gtcccacctc aaggggtgca      6900
     aggtctgcat cgttcatcgt cgacgactac agacccagat gatgggtgat ctccctcgag      6960
     aacggatcac gtactccagg cccttcaccc acacgggcat tgatttcgca gggccgttcg      7020
     agatcaaaaa ttacaccggg cgtgcgtgtc tcataactaa gggctatgtc tgcgtcttcg      7080
     tgtgtttcag cacgaaggca atccatctcg aggctacctc cgacctcacc actgaaagat      7140
     ttcttgcagc cttctctcgg tttgtcgcac ggagacaatg cccccagcgc atttactccg      7200
     acaatggcaa aaccttcgta ggggcctcaa aggcgctcga acaagatttc ctgaacgcca      7260
     ccaagcttga tataatgaag gcatttcccc agcacatttt atcctggcag ttcattccgc      7320
     caagcgcgcc ccatatggga ggactgtggg aagcaggggt caaaagtttt aagaccctgt      7380
     tttacaagtc ttcgtccact gtcaaataca ccttcgagga actttccact ctcctgtgca      7440
     ggatcgaagc gtgcctaaac tccaggccaa tctctcccat gagcgaggat ccagaggacc      7500
     tgctggccct aagcccggga catttcctga ttggaggacc gctcttatcc attgcggaac      7560
     cggaaattct ggtcgagcct atgtcactga tcaaccgatg gcagcgactg aaggcaatcc      7620
     agcaggcttt ctgccgccgc tggaagagtg agtacctcaa ggagcttcac aaacggaaca      7680
     agtggaagtc accgactcgc agcatccaga ccggcgacct cgtgatcgtg tccgaagatc      7740
     atctcccctc caacgagtgg cgcttagggc gaattgagcg cactctgccc ggggctgacg      7800
     gtctcgtccg agtggctgat gtcaccaccg cgcgtgggtc tatccgaaga cccgtagcga      7860
     agcttattct gttgcaagac agcaggagtc ctgagcctaa aaccgtatcg tgactcccaa      7920
     tccctctatg ttccctccga atgtcctcgt ctccgtgcat gttgttcgtt cccgcgcata      7980
     gactaatcca ctccccccta cgtaatttct ttcgttacag ttcgttcagc tccccccttc      8040
     atagcgacat ggcccccaca cgtctgccgc accaccgcag caaacgagct gctccgcagg      8100
     gcacgaacgt gtaccgatgc cgggtctgtc ggggggttca tgcactccgg cagtgtcagc      8160
     gcttcctgaa cctccgaggg gaaaagcggc tccgggcggt gctgatcaac aagtattgtc      8220
     ccaattgctt ggcacacgag cattcatccg acgcgtgccg gactcgccat ggttgccgac      8280
     gatgcgggca aaggcaccac accctgctcc acatggccga ccaaacgccg agacaacgtg      8340
     cctccgcccg gcggcgcagc caatcacccc cctccgggcg tgctgcaccc ccgctacaac      8400
     cctgttcccg atcatcgtcc gaccgctccg cttccccaga aggcgcaccc gaaatctctt      8460
     tatcctccct gctccacgcc aggacgacga ctgtcctgcc aaccgcagtt ctccggttgg      8520
     gcaatggctc gaaatccttc gagacccgcg tccttctcga tgcgtgtgcg gctgagagcc      8580
     gcatcaatcg ctcctttgcc cggtccctgg ggttagctgt gaccaaggtc ggggtcgacc      8640
     aagcctgtac ggccgtcctc gagtcgaggt ccgacgagac gttccgacgg aacgttatat      8700
     tccgggtcga agaggacttg ctcatccgca ctcccatccg ggaagtggcg gcgccggttc      8760
     gggagaaatt cgccaccctg atcctggccg acccctattt ctatcggccg gcgtcggtgt      8820
     ccgtggtact cggggcagac ctctatccgg aggtcatcca accaggctgt gtgcccggtc      8880
     atagcggtac tcccgcagcc cagagcaccg tgttcggatg ggtcgtctcc ggctcctgtg      8940
     ggatctaggc gctccagaac gttgccgtcc cccgtccttt atatgtccag ggtggcaatt      9000
     gcaacatgtt gcaagggggg cggta                                            9025
//
ID   BEL-1_DWil-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   scaffold_180576;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_DWil_;
KW   BEL-1_DWil-I; BEL-1_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-381
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_180576; Positions   25473   25853.
XX
SQ   Sequence 381 BP; 98 A; 95 C; 85 G; 103 T; 0 other;
     tgttcacgcc accgggtgaa cagcagtgag cggcgaagag cagtgaagag tgaggagggt        60
     tttttgatcc tcggcatcta cggtcacacc aggaggggtg actgggtttt ttccaatggg       120
     catcgccatt atactgaatc gagattttca cccgaacacc cgttcaccgc ctgtatatta       180
     tactttgcga tttgtcactt tttccaaccg aaccatttcg tgtgtgtgtc ggtatatctt       240
     gtgaactaaa taaagcaaac atagaattaa aacgaagttt tcgcgcgttt taatcattct       300
     actcacgtac gagaccctga agatattggc acccgccaac cacttgatac tatatcgggt       360
     ccttccgccc cgccacaaac a                                                 381
//
ID   BEL-1_FoCa-I repbase;    DNA;    INV; 5645 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_FoCa-LTR;
KW   BEL-1_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5645
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2582-2582 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..5575
FT                 /product="BEL-1_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAPTVLDKATSERSTTSDLIDYLETELTSHATTPLDE
FT                 AHTSHLLSMVKACQTDVMEIHRKIQLASPPDMTPHQQEFQRLMTKSTKLLS
FT                 AFTGIKMKFPVSSSASSSSAATSSTTPTTTDIRLPRLELPSFDGNLQDWVT
FT                 FRDMFVTAVHDNLSLSKSQKLTYLKSLLKNEASRQISSMIISDTNYDIAWS
FT                 QLSDRYQNDRELLFAILRRFHNQALVKPQSSTSIRSLVDVSRECIRSLDVL
FT                 KLPTDQWDAHLLFILVTKMDSTSKELWEQSLKDSSIPSLKSLFEFLEQRAR
FT                 ALAASGSLSSSSKPVHPNNPHGNRVQTRNMVHTTNASRNCHLCEASPHPLF
FT                 KCEKFLGLPIQQRVDGVKKLNLCFNCFGPHRIQDCPSNRTCRTCNGKHHTL
FT                 LHKPRQADAAAIPPVVLHAENSAPHPPRDKSHSTPKEYDTLLATCLVQVAD
FT                 PSGNYHTLRVLADNGSNANYVTDSCIKRIGVPRRRYFATATGLGGVSLVNA
FT                 TGITEFSVSPHFDSTISFFVSRCLITSKITGRLPSSTFDHSRWSHLQNLQL
FT                 ADPNYYKPQDIDMLLGAEFFFDILKGTKLKGPPNSPFAISTSFGWLIGGGA
FT                 PNAPLINPQVHATLASQHGRSTNSISSASDQDEHLDATLRRFWEIESAPLQ
FT                 RLQTSDESKVESHFASTYRREENGQFTVQIPFKSQVCHPPPPSAGLSNPAI
FT                 RVPAIGKSMDIAMKRLLYLERRLAKNPDHKKQYALFMKEYEDLGHMERVTP
FT                 EDSTSACYIPHHFILKESSTTTSFRVVFDASAKTSNGVSLNDTMMVGPTIQ
FT                 DSLTDLLTRFRIHKIAFVADVAKMYRQILLSSPDREFHRILWREDPSKPVQ
FT                 HFRLRTVTYGTAAAPFLATRVLEEVATLEKDSFPRAAEVALRDFFVDDLMS
FT                 GEPSVEEAIETQHQLIKMMESAKMSLRKWSSNSQAVLDTLPPEMRETQSLL
FT                 NFDTDSSIKTLGIRWNPKADQFTFMVLPTPSTTQVTKRSILSEIARLFDPV
FT                 GWLAPVIINGKIIMQSIWKLQQGWDESLPMEIHNQWNAFRTDLEGLVKLSI
FT                 NRYFLQGSQLLCPSLNVPSFTTTKYYLAGFCDASEDAYAAAVYFCAYDGQN
FT                 SSISLVTSKTRVAPLKKISLPRLELCGASLLADLTLAVQSAVKVPIHSITA
FT                 WTDSTVTLAWIRSDSLRWKTYVANRVTSIHEKIPPMRWGHVRGDENPADCA
FT                 SRGITVKDLIYHPLWWEGPPWLKNGIPDPQCCVPLNHSLAASEERKPKPTV
FT                 FHSMIEFNDSILHRYSSLLKLVRITAFIFRFVKSFKCRQDLKLCHVVTRSG
FT                 KDVATVEPRHPVHKQVRPKSTKSTTNVPPLTPAELDQAFSYWIKHSQQQEF
FT                 SKEIHSLANGLPIKKKSKLISLLPFIDSIGLLRVGGRLKNAKISEDQRHPI
FT                 LLSSHHHLTQLLIKSEHLKHFHAGPQLLMSVLQRRYWIIRMKDAVRREIAK
FT                 CLTCTRTKAQTLQQVMADLPSFRVNPARPFLKCGVDYAGPFSVRPIQPRSK
FT                 ITLKAYLAVFVCCTTRAIHLEVATSLSTDMFIAAFRRFISRRGLPTDMYSD
FT                 NGTNFIGANREMKEMVQLVNSSSHNQQVADNLSRDGIRWHWNPPAAPHFGG
FT                 NWEIGVKSCKFHLKRIMGSHRLTFEELTTAACQIEAILNSRPLTPESNNPE
FT                 DLAALTPGHFLIGAPLTAVPEPNLLDLKINSLSRWQLIQQMIQAFWKRWSA
FT                 EYLSRLQQRPKWMSGSRAIAVGDIVVIKEENLPPCVWKLGRILALHPGNDS
FT                 LVRVVTVKTSTGVFKRPIVRLCLLPIENSSQDEIL"
XX
SQ   Sequence 5645 BP; 1529 A; 1544 C; 1158 G; 1414 T; 0 other;
     ttttggtctc gcttcaaccg gatataaacc gtccattcgc aagtgtgtaa atttggtaag        60
     cgctgtcttt cgttaagtcc attgttgtgg gttactggat aggaggttca gaatcggcca       120
     tcgggcgtcg ggttgaaccc cagtagcaac aacaatcatg gcacccacag tgctggataa       180
     agcaaccagt gaacgctcca ccactagcga cctcattgat tatctggaaa cagaattgac       240
     ctctcacgcg acaaccccat tagatgaagc acacaccagt catcttctgt cgatggtgaa       300
     agcctgccag accgacgtaa tggagattca ccgtaagata cagcttgcat cacctccaga       360
     catgacacca caccaacaag aatttcagcg actaatgacc aagtccacca agttattatc       420
     agcatttact ggaatcaaga tgaagttccc agtctcatct tccgcctcca gttcaagtgc       480
     tgcaaccagt tcaaccactc caaccacgac ggatatcaga ctccctcgtc tcgaacttcc       540
     ctctttcgac ggcaatctgc aagattgggt cacttttcgg gacatgtttg tcactgccgt       600
     gcatgacaac ttgtctctta gtaagtcaca gaagcttacc tatctaaaat ctctactcaa       660
     gaatgaagca tccaggcaaa tctctagtat gataatatcg gacactaact atgatattgc       720
     gtggtcccag ttgtctgata ggtatcagaa cgatcgcgaa ctacttttcg ccattctccg       780
     tagattccac aaccaagctc ttgtgaagcc gcagtcatca acatcaatcc gtagcctagt       840
     tgatgtctct cgtgagtgca tccgatcact ggatgtcctc aagcttccta cagatcagtg       900
     ggacgcgcat ctccttttca tcctagttac gaagatggat tcaacatcca aagaattgtg       960
     ggagcagtcg ctcaaggaca gctccattcc ctcactaaaa tccctattcg aatttctcga      1020
     gcagagagct cgagcactag cagcaagtgg atcattatca tcatcatcga agcccgtgca      1080
     ccccaacaac ccgcatggca acagagttca gacacgtaat atggtccaca ccacaaatgc      1140
     cagcagaaat tgtcatttat gtgaagcaag tcctcatcct ctattcaagt gtgagaagtt      1200
     tctgggactc ccaattcagc aacgagttga tggcgtcaag aagttgaatt tgtgtttcaa      1260
     ctgctttggg ccccacagaa tccaagactg tcccagcaac agaacgtgta ggacgtgcaa      1320
     tggtaagcac cacacccttc tacacaaacc caggcaagcc gatgccgcag ccattcctcc      1380
     agtggtgcta catgcagaaa acagcgcccc tcatccccca cgtgacaagt ctcattccac      1440
     tcccaaggaa tacgacaccc tactggcaac atgcctcgtc caggtagcag accccagcgg      1500
     taactaccac accctccgag tgctggccga caatggcagc aatgcaaact atgtgacgga      1560
     ctcttgcatc aaaaggattg gagttcctcg cagacggtac ttcgcaacgg caacaggtct      1620
     aggtggagta tcccttgtca atgctactgg aattactgaa ttctcagtca gcccacattt      1680
     tgattcaacc atttcattct ttgtctccag gtgtctcatc acttcgaaga tcactggcag      1740
     actcccatct tcaaccttcg accacagcag atggtcacat ctccaaaacc tccaattagc      1800
     cgatcccaac tactacaagc ctcaagacat tgacatgctc ctgggtgctg agttcttttt      1860
     cgacattctc aagggtacca agttgaaagg cccacccaac agtccattcg ctatctcaac      1920
     tagtttcgga tggctgattg gtggtggtgc cccaaacgcc cctttaatca atcctcaggt      1980
     ccatgccacc ctcgcctcgc aacatggtcg cagtaccaat tcaatctcct ctgccagtga      2040
     tcaggatgag cacctcgacg ctacgctacg gagattctgg gaaattgaga gtgcgccctt      2100
     gcagcggctc caaacctcag acgaatcaaa ggtcgaatct cacttcgcct ccacctatcg      2160
     ccgagaagag aatggtcaat tcaccgtgca gattccattc aaatctcagg tatgccaccc      2220
     tcctccaccg tcagcaggtc tgtcaaatcc tgcaatcaga gtaccagcaa ttggtaaatc      2280
     catggatatt gccatgaagc gtctcctcta tttggaacga cgtcttgcca agaatccaga      2340
     ccacaagaaa caatatgcac tattcatgaa agaatatgaa gatttaggcc acatggaacg      2400
     tgttacacca gaggattcaa cttcagcctg ttacatcccg catcatttta tcctcaagga      2460
     atccagtaca acaacaagtt ttcgggttgt attcgatgcc tccgcgaaga catcaaacgg      2520
     tgtttcacta aatgacacga tgatggttgg ccccaccatt caggatagcc taactgatct      2580
     cttgactcgt tttagaatcc acaagattgc ctttgtagcc gatgtcgcga aaatgtatcg      2640
     gcagatcctg ctttcgtcgc ctgacagaga gtttcatcgc attttatggc gtgaagaccc      2700
     tagcaaacca gtgcagcatt tccgacttcg caccgtcaca tacggaactg ctgcagcccc      2760
     cttcctagcc accagagttt tggaggaagt tgcaaccctg gagaaggact ctttccctcg      2820
     agcagcagaa gttgccctcc gcgatttctt tgttgatgac ttgatgtctg gagaaccatc      2880
     agtcgaggag gcaattgaaa cccagcatca attgatcaag atgatggaaa gcgcaaagat      2940
     gagcctacga aaatggtcgt cgaattccca agccgtatta gataccctac cgcctgagat      3000
     gagagagacg caatctcttc taaactttga cactgattcc tcgatcaaga ctcttggcat      3060
     tcgatggaac cctaaagcag accaattcac ctttatggtt ttgccaactc catccactac      3120
     tcaagtaacc aagcggtcca ttctttctga gatcgctcgc ctgtttgacc ctgttggttg      3180
     gctcgcccct gtcataatca atggcaagat tataatgcaa tcaatttgga aactgcagca      3240
     gggatgggac gaatctttac cgatggagat tcacaatcaa tggaatgcat ttcgcactga      3300
     cctcgaaggt ttagtcaaac tctccatcaa tcgttatttt ttgcaaggct ctcaattgtt      3360
     gtgccccagt ctcaatgtcc ctagttttac caccaccaag tactacctcg ccgggttctg      3420
     cgatgcctcg gaggacgcct atgcagccgc agtctatttt tgtgcctacg atggtcaaaa      3480
     tagttctatc tcacttgtca catccaaaac tcgcgtggcg cccttgaaga agatatcctt      3540
     gcctcgcctt gagctatgcg gagccagtct tctcgccgac cttacactcg ccgtccaatc      3600
     agcagtaaaa gttccgattc attcaataac ggcatggacg gattcgaccg ttacccttgc      3660
     atggatccgg tctgactcct taagatggaa gacgtacgtg gccaacaggg tcacaagtat      3720
     ccatgagaaa attccgccca tgcgttgggg acatgtccga ggagatgaaa atcctgcaga      3780
     ttgcgcgtca cggggaatca ctgtaaagga tcttatctac cacccccttt ggtgggaagg      3840
     acctccatgg ctcaagaacg gaatacctga tccccaatgc tgtgtcccac tcaatcactc      3900
     cttagctgcc agtgaagaaa gaaaaccaaa accgaccgta ttccattcaa tgatagaatt      3960
     caatgattca atcctgcacc gatattcatc tctactaaaa cttgtcagaa taacagcatt      4020
     catattccga tttgtcaaaa gtttcaaatg tcgccaagat ctcaagttgt gccatgtcgt      4080
     cactcgttcc ggtaaagatg tcgctacagt ggaaccacgt cacccagtcc acaagcaagt      4140
     tcgccccaag tccacaaaat ccaccacgaa tgtgccccct ttgactccag cagaacttga      4200
     ccaggcgttc tcatactgga ttaagcactc tcaacagcaa gaattttcca aggaaattca      4260
     ctccctcgcc aatgggctac ctatcaagaa gaagagcaaa ttaatttctc tgctgccctt      4320
     tatcgattca ataggattgc tcagggttgg tggtcgtcta aaaaatgcca agatttctga      4380
     agaccaaaga catcccattc tcctgtcatc ccatcatcac ttgacacaat tactcatcaa      4440
     atctgaacat ttgaaacatt ttcacgctgg tcctcagctt ctgatgtcgg tacttcagcg      4500
     gcgttattgg atcatccgca tgaaagatgc agtccgaaga gaaattgcaa aatgcttgac      4560
     atgtaccaga acaaaggctc aaactctaca gcaagtgatg gcagacctcc cttcatttcg      4620
     cgtcaaccca gctcgaccct tcctgaaatg tggagtggac tacgctggac ccttttctgt      4680
     tcggcccatc cagcctcgaa gcaaaataac tctaaaggca tatctggcag tatttgtgtg      4740
     ctgcaccacc agagcaatac acttggaagt agctaccagc ctctcaaccg acatgtttat      4800
     cgctgccttt cgccgattca taagcagaag aggtctaccc acggacatgt acagcgataa      4860
     tggtacaaat ttcattggtg ccaatcgcga gatgaaggaa atggttcaat tggtaaattc      4920
     ctcatcccat aaccagcaag tggccgataa cctatcaaga gatggaatcc gatggcattg      4980
     gaaccctcct gccgcccccc attttggtgg aaactgggag attggtgtca aatcctgtaa      5040
     atttcaccta aagcgaatca tgggatcgca ccgattgact ttcgaagaac tgaccactgc      5100
     agcgtgccaa atcgaagcga tcctgaactc ccgtccgttg acccctgagt ccaacaatcc      5160
     agaagacctc gccgctctta cccctggaca tttcctcatt ggtgctccat taacagccgt      5220
     tccagaaccg aacttgttgg atctcaaaat caatagcctt tcccgatggc agttaatcca      5280
     acaaatgatc caggcttttt ggaagcgttg gtcagccgaa tatctatccc gactccaaca      5340
     gcgcccgaag tggatgagtg gatctcgagc gatcgcagtt ggcgatattg tcgtcattaa      5400
     agaggagaac ctacccccat gcgtttggaa acttggtcgt atcctcgccc tgcaccctgg      5460
     aaatgactca ttagtgcgcg tcgtcacggt caagacgtct actggtgttt tcaagcgtcc      5520
     cattgtaagg ttatgtttgc tcccaattga aaattcttcc caagatgaaa ttctctaatt      5580
     tttgtaatgt atacagtttt gtcaatttta attttattga agccgttggt tcaaggccgg      5640
     cggaa                                                                  5645
//
ID   BEL-1_FoCa-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-478
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2592-2592 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 478 BP; 143 A; 98 C; 68 G; 169 T; 0 other;
     tgttgaggaa gttttaagta tttgactcct gcatttgtat ttttaagatt atgtatgaaa        60
     aggttgtata attcaatttc cctatcctac cctctgacgc acatgcatta tttattaatt       120
     tgactaatta atattaaagg taaatgacta gttaagagtt tgcggcttat cattttgttc       180
     tgctcttcca gcataaatgt aatttactta caagtctcca tgttaatcat aaccttgtcc       240
     ggccattcac acgaagctta taaatattgg ttacaattct tatctcgatg tcactctgtt       300
     gtccatggtc taccagttac tttgtcactc aagctcttaa gtcgcaaact gccccaaata       360
     aataatttaa gtgacatata actgctttgt ctcaacgtgc ctcatttcaa gaacgagaga       420
     tttacatcac acagcatcat taccaatcac acaatcaggg aactttgcat tctcaaca         478
//
ID   BEL-1_HAS-I repbase;    DNA;    INV; 5911 BP.
XX
AC   AEAC01014393;
XX
DT   27-JAN-2011 (Rel. 16.02, Created)
DT   27-JAN-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Harpegnathos saltator genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_HS_;
KW   BEL-1_HAS-LTR; BEL-1_HAS-I.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RP   1-5911
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Harpegnathos saltator genome.";
RL   Direct Submission to Repbase Update (02-FEB-2011).
XX
DR   Genome; AEAC01014393; Positions    7483   13393.
XX
CC   Positions [4918-5505] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1300..2703,2707..3660)
FT                 /product="BEL-1_HAS-I_1p"
FT                 /translation="MKMTIAALSHLQRTPAELWDDHLVHIMTQSLDPSTRK
FT                 AWILHSSDGNSMPSFDELDQFVASRIHALEDFSQSPPNKAANKANSVSRVH
FT                 VATASISSRSSCPICKTSHFLSACPSFTRGSPEQRRELAKKHRRCFNCLSQ
FT                 NHSAQECKSKFSCRICQKRHHSSLHAAPESRKGVAGGESSAERASRTSDSI
FT                 DGVHSMLASSLGERRVPVLLATARVNVSSACGRSVVVRALLDQGSELTFVT
FT                 ENVTQMLRAKRLRMPVSVSAIGDVSAGKFHYATEIILSPLSSSSAPLTTTA
FT                 VILKSLTSYAPKRAIDSRCLQHLSGLPWADPDPLGDDPIDLLIGAELYGEI
FT                 LRDGLRRGAAGQPIAQNTTFGWILSGPLAHPELIDSRSAPGSARDASVVTA
FT                 SVFHCLTTPTLDVELRRFWKVEELPRVSLRSPEDERCEAHFKSIHSRSSDG
FT                 RYIVRLPFKRDPPIDIGDSRFRARCFISISRRLQKNSEQCRAYCNFLREYE
FT                 ALGHLKRVGNSTNSNDLEPIVFTPHHPVFRVNSLMTSLRVVFNASSPTSNG
FT                 SSLNDHLLAGPKLQTELPAVILRWRNFKYVYVADIAKMYRQIKIDFRDLNF
FT                 QRILWAENPRDPPMEFQLLTVTYGMSCAPFLALHVLQQLTLDKGDEFPFAG
FT                 AVLQDNVYVDDVLFGGNHLRDVIRIHAQLISLLRRDGFELRKWSSNSPELL
FT                 RDIDESNYGLACSKTLAADESIKILGIAWIPSVDAFQISVSLSDPIATSKR
FT                 SILSTIAETVRPSRMGHSGYHYRQNSNATTLVRKS"
XX
SQ   Sequence 5911 BP; 1220 A; 1641 C; 1490 G; 1560 T; 0 other;
     atcagtgagt gccaactaat ctaatcaggc attttttttg ttctaatcga gaatccgttc        60
     gaagcatcat tttgtgtatt ttcgagaatt ttccaccgcc ggaactctct ccgatttctg       120
     tcgttgtccc ggacggacac tcagttcttg ctcgctgtcc tgaacggact ctcgattaat       180
     cattcttttt cttattgttt ttttttgttt cgcgaatttt gtctaaatct taaaactttg       240
     taacgtccta cgccgattat cggttccgat agccgggcac gccgatcatc cgccgctcac       300
     gaaaatcgct gacgtcgcga gatcaactgc tcgaagctcc gaagcacttc tcccggcgct       360
     ccgattaatt gtaactcggc taaatacatt tatttaagag catttcgccg cagcgaccga       420
     gattcatttc gattcttttt ttgttggtgc aacccgtcct ctgcgatccg ttccatactc       480
     tcccgcgctt cttgcgaagc ggtcccggca tgcgttcgct tccttttacg cgcgaacaat       540
     ttctgagcct tcgagccgga tcggtgaggg tggacgtgaa tctcaaactg cagagggatc       600
     ggtgatccaa atggcccaat ggagcgacag atgcaagtgc agcgccaaat cgcacgcgct       660
     cttgaaaact tcaagaagct gggacgcaat aattacaccc cggcggtcgt tcgaaatcgg       720
     atccgaacgg tgaaggagct ttggctgcaa ttaaatgacg gacatgtgat gctggaaaat       780
     tcggtaccag aagctacgtg ggctaatgta agctattttt ctgataaaat ctacgacacc       840
     accgagaccg tttatcacgc agcgctggac ttcatgaccg agatcctcga ggaattggag       900
     cctcccgtga gcccaaattc tatcgattcg tcttatcagc gcttgcccta gtccgcgttt       960
     tcgttgtctc atttgccgcc tatacaattg ccgccgtttg acgggagcgt gacggaatgg      1020
     gagccgtttc gtgaccgatt tacggcgctc ataatcgaca acaaagaatt gaatgatttt      1080
     gcgaagatgc attttctcgt atcttttctt cgcggtcgag ctctcgagta tctcgctgat      1140
     ttcgccgtca ccgcggataa cttcgcgggt gcgtggaaaa cgatgatgga tcgttacgac      1200
     aacaaacgtc gcttgttgtc ggctcacatg tcgaccttgt tgagtttgcc gcgtttatct      1260
     cgtgagtcta tgtccgatct ttaatctctt cgcggaaaaa tgaagatgac catcgctgcg      1320
     ctaagccact tgcagcgcac tcccgccgaa ttgtgggatg atcatctcgt tcatatcatg      1380
     actcaaagtt tggatccgag cacgcgcaag gcatggattc ttcattcgag cgacggtaac      1440
     tcgatgccat cattcgacga attagaccaa ttcgtcgcgt ctcgtattca tgctctggag      1500
     gatttctctc aaagtcctcc caacaaggcg gcgaataagg ccaattccgt ctctcgagtg      1560
     catgttgcga ccgcttcgat ttcgtcgcga tcgtcttgtc cgatctgcaa gacgtcacac      1620
     tttctaagcg cgtgtccatc gtttacacga ggatctccgg agcagcgacg tgagcttgct      1680
     aagaaacatc gtcgatgttt caattgtttg agtcaaaatc attcagctca agaatgcaag      1740
     agtaaatttt cttgtcggat atgccagaaa cggcatcatt cctcgcttca tgctgccccg      1800
     gagtcgcgta agggcgtcgc tggtggggag tcgtcggcgg agcgagcgtc gaggacttct      1860
     gattcgatcg atggggtgca ttcgatgctc gcttcttcac tcggggagcg acgcgttccc      1920
     gtgctacttg ccacggcccg cgttaacgtg agctcagcgt gcggccgatc cgtcgtcgtc      1980
     cgcgcgctct tggatcaggg atctgagctg acctttgtta cggagaacgt gacgcagatg      2040
     ttgcgtgcga agcgcctccg tatgccagta tccgtgtccg ccatcggcga tgtcagcgct      2100
     ggcaagtttc attatgcgac agagatcatt ctctcacctc tgagctcctc gtccgctccg      2160
     ctcacaacca cagcggtaat tttgaagtcg ctcacctcgt acgcgccgaa acgcgcgatc      2220
     gattcacgtt gcttgcagca cttgtccggt ctgccttggg cggatccgga tccgctcggt      2280
     gatgatccta ttgatcttct cattggcgcg gaactttacg gcgaaatcct tcgcgacgga      2340
     cttcgccggg gcgcggccgg tcagccgatc gctcagaata ccacgttcgg atggatactt      2400
     tccgggccgc tcgcccatcc agaactcata gattcacggt ccgcgccggg gtccgctcgc      2460
     gatgcgtccg tcgttactgc ctccgtcttc cactgtctga ccacgccaac tctcgatgta      2520
     gagctccggc gattttggaa ggttgaggag ctcccgcgcg tctctcttcg ctctcccgag      2580
     gacgagagat gtgaggctca cttcaaatct atccattccc gatcatcgga cgggagatac      2640
     attgttcgcc tcccgtttaa gcgagatcca ccgatcgaca tcggcgattc acggttccgc      2700
     gcttaacgct gtttcatctc tatctctcgg cgattgcaga aaaattcgga gcagtgccgc      2760
     gcgtactgta atttcctccg cgagtatgag gctctcggcc acctgaaacg cgtcggcaat      2820
     tcgacaaatt cgaacgatct tgaaccaatc gttttcactc cgcaccatcc ggtttttcgc      2880
     gttaacagcc taatgacgag cttgcgggtt gtgttcaacg cgtcaagtcc aacgtcaaac      2940
     ggatctagcc ttaacgatca tttactcgcc ggacctaagc tgcagactga attgccggcc      3000
     gtaattcttc gatggcgcaa tttcaaatat gtatatgttg ctgatatcgc aaaaatgtat      3060
     aggcagatca aaatcgattt ccgtgatctt aactttcaac gcattttgtg ggccgagaat      3120
     cctcgcgatc cgccgatgga atttcagtta ttaaccgtta cgtacggtat gtcgtgtgcc      3180
     ccgtttctcg cattacatgt gctccaacaa ttgacgctcg acaaagggga tgagttccca      3240
     ttcgccggtg ccgtcctgca ggacaatgtt tatgtcgatg acgttttgtt cggaggtaat      3300
     caccttcgcg acgtaattcg gatccacgct caacttatct cactgctccg tcgcgacggg      3360
     tttgaattgc gtaagtggtc tagcaactcg cccgaactgc tcagagacat cgacgagtcc      3420
     aattacggat tagcatgttc aaaaaccctc gcggccgacg aaagtattaa aattctcggg      3480
     attgcgtgga ttccgtcggt ggacgcattt caaatctccg tttcgttgtc tgatcccatt      3540
     gcaaccagta aacgttcaat tttgtcaacg atcgcggaaa ctgtacgacc ctctcggatg      3600
     ggtcattccg gttaccatta ccgccaaaat tctaatgcaa caactctggt gagaaaatct      3660
     taattgggac gacccgatcc cagacgcgct tctcgcgcga tggcaaccga tttatgcggg      3720
     tctctcggtg ctcgatggtt tgcaaatccc gcgctggacc ggattcggcg atactgttcg      3780
     gcgcgttgaa ttgcacggct tcgcggacgt ctcaaatgcg gcctatgccg cagtagttta      3840
     tagcaaaatt attactcgaa caggtcaagt gaccgtcact ctgctcgcgg gccgatcgaa      3900
     agtcgccccc ctccaacctc tcagtgtccc tcggcttgag ctttcggccg ccgtgctcct      3960
     cgctcgtctt atcgagttcg tttgtctctc actcaatctc aaaaccgtgc catgtcattg      4020
     ttggtcggat tcgacggtcg cgttgacatg gctctcgcac catccgtcgc gttggaggac      4080
     gttcgttgcg aatcgtgtcg ctgacgtgca aacacgcata tccacagcgc aatggcgtca      4140
     cgttccaacg agcgacaatc ccgcggattg tgcatcgcgc ggattggtgg gccatgaaat      4200
     actgaatcat ccgttgtggt ggcagggtcc ggcgtggctt ttgcagtcag ttgacgcttg      4260
     gccacctcct ctcgcttctt tggccgccca ggtggtgcct gaggaaaaaa tcgtcgcgat      4320
     gcataacgtg cagacccccc gtcgtgggat atcctcgcac gtttttcctc atggtctaaa      4380
     ttgatccggg tggtcgtcta tatatttcgt ttcgtgtccg catgtcgtcg tgtcagacat      4440
     cccaatgcgg atgtcgaatc tcggggtcga gttctaaccg ctgtcgagtg ctcacaggct      4500
     cgactattct tgatcaagcg gattcaaacg gagctgtttt cgcccaccac tcgcaccctc      4560
     gcgaaccgaa gagcgctccc tgcaaaggac ccgcttctat cgctccggcc gtttttggat      4620
     catgacggca ttgttcgtgt tggcgggtgg atttctcgcg ctccattgcc tttcgagacc      4680
     cgacacccga ttctcctgtc gtcatatcct cttactaagc tcatagtaga tcatgcgcac      4740
     cttcgcgcgc ggcacgccgg aatgcagctc acattgagta tccttcgtcg ccacttttgg      4800
     atcattcgag cgagaagtat aattcgagag cgaattcatc gttgcattcc gtgatgttcg      4860
     cgagcgtgcc gcggtccccc ttcaacttat gagcgatctt ccgcgggaaa gagtgaccgc      4920
     tccaactcga aattttattc attgcggcct cattattatg cggattatgc ggggccagta      4980
     tttattcgcg cctctgctgg ccggggcatc gtttcacgga aggcgtatat cgcgctgttc      5040
     gtgtgcttgg cgacgcgcgc cgtgcacctt gagctcgttg ccgactactc ctcgcaagcc      5100
     ttcttaaacg cgttttctcg attctccgcc cggcgggggc ttccggcgag gatgtactcc      5160
     gacaatggta caaatttcgt tggagccgac agggcactcg ccactgcata ccgtgccgcg      5220
     cttcgcgatc ctaattttca aaaccgtacg gcgaccgacg gtatcgagtg gaaatttatt      5280
     ccctcgtcgg cccctcattt cggcggcatt tgggaagccg gaattaagag cgtcaagcat      5340
     cacgtgcgtc gatcacttaa aactcagact ctcacgttcg aggagttcgc gactcttctt      5400
     tgccggatag aagcctgctt gaattcgagg ccgatcgctc ccttgtcgga ttcattcgag      5460
     gattatgagc ccctaactcc gggtcatttt ctcatcggat ccgctcttac gacgagcccc      5520
     gagccatcct ttcttgatat tcatgaaaat cggctcaccc ggtggcagct agtgcgacat      5580
     ttaacggagc gattttggcg gctgtggtat gcggactatg taaactcgct tcaacagcgg      5640
     agtaaatgga agcaaatcca acccgcgatt aaaattgggc agctcgtcct gcttaagaac      5700
     tcgatgcttc ctccttgtaa gtgggagttg gctcgagtta ctcagtgtca tcccggcgcc      5760
     gacggacttg tgcgcgttgt gagcgtccgg acggcgagct cagagatgac gcgtccaatc      5820
     ggcaaattat gcccattgcc gatcgattgc gagaaaccgg acccgctagt gtccgaatca      5880
     cattgaaacc atcgtttcaa ggcgggcgga a                                     5911
//
ID   BEL-1_HAS-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   AEAC01014393;
XX
DT   27-JAN-2011 (Rel. 16.02, Created)
DT   27-JAN-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Harpegnathos saltator genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_HS_;
KW   BEL-1_HAS-LTR; BEL-1_HAS-I.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RP   1-213
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Harpegnathos saltator genome.";
RL   Direct Submission to Repbase Update (02-FEB-2011).
XX
DR   Genome; AEAC01014393; Positions    7270    7482.
XX
SQ   Sequence 213 BP; 45 A; 65 C; 54 G; 49 T; 0 other;
     tgttgcggat tcgccgagaa tcagcaacac tgcgcttgat gtttacacga tcatgatcgc        60
     tgtgtcgccg ctgacgtcag catacacgtg cgaggcggct ctccgacatt ctaatgtctc       120
     gcgcgaccct cgctgcgctc ggcgtgactg ttcagcctcc cgacgcgtga aaacacttat       180
     tccaaacaaa acttgtgtcg cgaggctgaa cca                                    213
//
ID   BEL-1_HMM-I repbase;    DNA;    INV; 6569 BP.
XX
AC   CAEZ01005117;
XX
DT   25-JUL-2012 (Rel. 17.08, Created)
DT   25-JUL-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_HMM_;
KW   BEL-1_HMM-LTR; BEL-1_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-6569
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01005117; Positions   15607   22175.
XX
CC   Positions [5608-6156] - Integrase core
CC   'GTTCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           938..2563
FT                 /product="BEL-1_HMM-I_1p"
FT                 /translation="MPITRSRGRSEGLRYEAEPSSSHTEVTHPPTNTQEDS
FT                 VIEKNLIVPSDEKEDSRIISINKEEQLESTQIKLTTSKRANSKKSTKSRRK
FT                 ARNAREEILRIKLELAQLALEDAESDSSESQEDNISKTDYVSSWIEDNAQI
FT                 VQKSLTPCADVPRQPHPIPSCYRMPQHPNIGNNSENQQAIQRDSTKEIEEL
FT                 KKEIENLKKRCEKAETAPTSLCMKTEVPKPTMLPPSLSYNYPVASKVIMDL
FT                 PTYSGMLNEWLSYRAIYENTKRYFNEVENTARIRRSLTGKALEVVDTQLIA
FT                 HSKPDAIIEELEMNFGRPDAIAYSEYDKLRSLPRCADNPKEIHAFASKVRS
FT                 SVNLFRALDLHNFITAPDITRALREKLPSSLCTRWYEEQASIFRPDLTHFS
FT                 EFLTKQAACRTPYSTEIPHSEPTRRVIHRTHNTTEERKTNRFHGMVKSTCK
FT                 ICNKEGHHSISCKKFQDANSDKRWELAKEHRLCFRCLRFRQSGHSCKPQKC
FT                 NTKGCIGTHHRLLHYDKKEKSENRNQQEEKETVANAWVPSRGACLS"
FT   CDS           2322..3233
FT                 /product="BEL-1_HMM-I_3p"
FT                 /translation="MPTQIKDGNSPKNTDCASDACGSGNRDILANHRSAIL
FT                 RDASVLIIDYYTMIKRRNQKIVINKKKKKPWPTHGYRLEAHAYLKIIPVRV
FT                 HGPAGETSAYALLDDGSTVSLIDEALANEVGAEGRLDPLKMEAIGDIVIET
FT                 PGSRRVTVTLANSQKKKISFTARTVPCLNLSPQTIRKEDLAACDHLIDLKN
FT                 KLAYDSATPKILIGQDNWNLLLAEDVRIGPKNQPIASLTSLGWVLHGAHNR
FT                 TLGQKIHFVNRVTTYEDKMDEQLRDYFALESLIINPRRPDSDPEIKAENIL
FT                 KKNIHRLQRWTH"
FT   CDS           4007..5650
FT                 /product="BEL-1_HMM-I_2p"
FT                 /translation="MTEVINLGTKEEKILGLMWRPSTDELRFNLKLARLPP
FT                 SLLNKTTPTKREALKIVMSLYDPLGFASPVTIRAKQILQESWRRIIDWDQH
FT                 LDEDLSKQWAEWMLHLQKLKNVSLPRCYSGYSNATSIQLHIFSDASETAYA
FT                 AAAYWRVVAPDGMVQVNMIMAKAKVAPLKVMSIPRLELQAAVMGVRIAEAV
FT                 IKEHRIAPECKIFWTDSKTVLTWIRNGARSYKPFVAHRLAAIEEYTKVEEW
FT                 RWVPSKLNVADIATREVPSDFGADHEWYHGPAFLKENPSTWPIEKPVVSNN
FT                 TGEEHTFTVKELQPKTKLREAIPDPQRFSKWERLLRATARVLQFLDICRNK
FT                 KEKIFYKRTRRNMESDPTWNKRRETLAKKSTTLHSKKSMDSNNFLILDSKY
FT                 ITKAENLLIRTSQQESFNEDITDLRYNRTIAKQSRLHSLPVELRDDIVVLR
FT                 SRIAAAEGIKDETKKPQVLDGDNYITQLYIDWTHRCLHHSSTEIIVNEVRQ
FT                 HFWVIRLRPTVKRIVHQCLKCRIRKAQPPQPSTGDHPKSRLAHHRRPFTYP
FT                 A"
XX
SQ   Sequence 6569 BP; 2010 A; 1560 C; 1446 G; 1553 T; 0 other;
     tcgtgctggt ccttcgagcc ggatctgggg actcctcacc gaagctgaag catcatccgt        60
     catcgtgcaa gtcatcgcag tgctccatcg cgaagtgctc cgtcgcacag tgctccgtcg       120
     cgcagtgccc cgtcgcgtag tgctctatcg cgaagtgttt tccgtcgcgc tcgcaaacgc       180
     aatcaccgtc gcgttttcgc atccgtattg actgtcgcgc tcgctactgc gctgacgtca       240
     caacttccgt cgcgtcgtaa gtcagtcgcg agtgttttgt gcgtccgtct tcaagtgtta       300
     tcgtccgtct ccgagaactt tgtgcatccg ccttcgagtg ttatagtgct ccatcgcgca       360
     gtgctccacc gtacagtgtt tccgcgctcg caatcgccgt cgcgttgcgc atccgtattg       420
     actgtcgcgc tcgctactgc gctgacgtca caacttccgt cgcgtcgtaa gtcagtcgcg       480
     agtgttttgt gcgtccatct tcaagtgtta tcgtccgtct ccgagaactt tgtgcatccg       540
     ccttcgagtg ttatagtgct ctatcgcgta gtgctccatc gcgcagtgct ccaccgtaca       600
     gtgtttccgc gctcgcaatc gccgtcgcgt tgcgcatccg tattgactgt cgcactcgct       660
     accgcgctga cgtcacattt ccgtcgcgcc ataagtcacg tcgtgagtgt tttgtgcatc       720
     cgccttcgag tgttatcgtt cgtctccgag aatcttcgtg catccgcctt cgagcgttat       780
     cgtgagtcgt cgtgagtgtt ttgtgcgtcc gtcttcgagc gttatcgtga gtcgtcgtga       840
     gtgtttgtgc gtccgccttc gagtgtcgtc gttcgtctcc gagaatcttc gtgcatcttg       900
     gtgagttttt actaattatc gtcggtcaat tgctaagatg cctatcacaa gatcaagagg       960
     tcgatccgag ggattgagat atgaagctga accttcatct agtcacacag aggtgacaca      1020
     cccgcctaca aacacacaag aggattccgt aatagaaaag aatttaatag taccaagtga      1080
     cgaaaaggaa gactcgagaa ttatttcaat taacaaagag gaacaacttg aaagcacaca      1140
     aataaagtta acaacttcga aacgtgcaaa ctcaaagaag tctacgaaat ccagacgtaa      1200
     agcaagaaat gctcgtgaag aaatacttcg catcaagctt gaactcgcac aattagctct      1260
     ggaagatgct gaatcagata gttcagaatc ccaggaagat aatatatcga aaaccgacta      1320
     cgttagctcc tggattgaag ataatgcaca aatcgtacaa aaatcactaa caccatgtgc      1380
     agacgtaccg aggcaaccac atccgatacc gtcatgctat agaatgcctc aacatccgaa      1440
     tatcggcaac aattccgaaa atcaacaagc aatacagaga gattcaacaa aggaaataga      1500
     ggagctaaaa aaggaaatag aaaatttgaa gaaaagatgt gaaaaagccg aaaccgctcc      1560
     tacatcgttg tgtatgaaaa cagaggtacc taaacctaca atgttacctc catcattgtc      1620
     atacaattat cccgtcgcgt ccaaagtcat catggatctt cctacatata gtggaatgtt      1680
     aaatgaatgg ctatcataca gagccatata tgaaaacact aagagatact tcaatgaagt      1740
     cgaaaataca gccagaattc gaagaagcct aactggaaaa gcattggaag tcgtcgacac      1800
     acaactcata gctcattcaa aaccggatgc catcatagaa gagcttgaaa tgaatttcgg      1860
     tcgtccagat gcaatcgcat atagtgaata tgacaagctt cgatctctac ctcgttgtgc      1920
     tgacaatcca aaggagatac atgcattcgc cagtaaagta agaagcagtg tcaatctgtt      1980
     tcgcgccctc gatttacaca actttatcac cgcgccagat ataacgaggg cccttcgtga      2040
     aaagctacca tcgtcgttat gtaccaggtg gtacgaggaa caagcatcta tattcagacc      2100
     agacctgacg cacttcagcg agtttctcac caaacaagca gcatgtcgca caccttattc      2160
     aacagagatc ccgcactcag agcctactcg tcgtgtgata catagaacgc acaatactac      2220
     cgaagaaagg aaaactaata gatttcacgg aatggtgaaa agtacgtgca aaatttgtaa      2280
     caaagaaggt catcacagta ttagctgcaa gaaatttcaa gatgccaact cagataaaag      2340
     atgggaactc gccaaagaac accgactgtg cttcagatgc ctgcggttca ggcaatcggg      2400
     acattcttgc aaaccacaga agtgcaatac taagggatgc atcggtactc atcatcgatt      2460
     actacactat gataaaaagg agaaatcaga aaatcgtaat caacaagaag aaaaagaaac      2520
     cgtggccaac gcatgggtac cgtctagagg cgcatgctta tcttaaaatc ataccagtca      2580
     gagttcatgg accggcggga gaaacctccg catacgctct attagacgac ggatcaactg      2640
     tatctctcat agatgaagct ttggcaaacg aagtcggtgc tgagggacgg ctggatcctc      2700
     taaagatgga agcaatcggg gatatagtta ttgaaacgcc gggatcaagg cgtgttactg      2760
     tgacacttgc taattcacag aaaaagaaga ttagctttac agctcgcacc gttccgtgtc      2820
     ttaatctttc cccacaaacg attcgtaaag aagatttagc tgcctgcgac catttgatag      2880
     atttgaagaa caaactcgcc tacgactcag ccacgcctaa aattctaatc ggccaagata      2940
     actggaattt attactcgcc gaagatgtcc gtataggacc gaaaaaccaa ccgatcgctt      3000
     cactcacgtc gctcggatgg gtgctccatg gtgcgcacaa taggacattg ggtcagaaaa      3060
     tccacttcgt caatcgagtt actacctacg aagataaaat ggatgagcaa ctgagagatt      3120
     actttgcctt agaatctctt ataattaatc cgcgtcggcc agactctgat cctgaaataa      3180
     aggctgaaaa tattttgaag aaaaatatac accgtttaca aagatggaca cattgagacc      3240
     gcacttttat ggaaagcaga gaacagcatc atggttagta attatgagtc ggcgctgaag      3300
     aggctcatat caatagagag aaaaattgat cgtgatcctg aactgaaaag gagatacacc      3360
     gaacaaatag aatcactcgt ccaaaagggc tacgctgagg tggcgcctaa aagtatctct      3420
     ccaggcagaa catggtacct gccacacttc gacgtgcaaa acccaggtaa accagagaag      3480
     cttcgcattg ttcacgacgc cgctgccaaa accaaaggta tgtcactaaa cgatttcctc      3540
     ctgactggac cagaccttct tcaatcgctt cctggagtca tgatgagatt tcgccgtcat      3600
     gctttcgctg tatcagccga catagccgaa atgtttatgc aagtcaaagt aaggcctcaa      3660
     gatagggatg cccttcgcta cctgtggaga ggacaccggc gggagggaac tcctgaggaa      3720
     tatcgcatga cgtcgcttat atttggagct gcgagttcac catgcaccgc gatattcgct      3780
     aaagattgga acgcaaaaag gtacaccgac acgcatccag aagcagtgga agctatcatc      3840
     cacaaccact atatggatga ctacctagac agtttccgaa gtatagaaga agctatagag      3900
     acttccaaga aggtccaaca tatccacgga gaagcttgtt tcaaactctg caagtgggtt      3960
     tcaaatatcc cgaaaaataa taaatgaact ggaatcacaa tcaaatatga cagaagttat      4020
     taacctgggt accaaagaag aaaagatttt gggtttaatg tggagaccgt caaccgatga      4080
     attacgattc aatttaaaac tggcaagatt accgcctagt ttattaaata aaacaacccc      4140
     tacgaagaga gaagctctaa agatagttat gtcgctctat gacccacttg gtttcgcctc      4200
     accggttact attcgggcta agcaaattct ccaggaatca tggcgaagaa taatagattg      4260
     ggatcaacat ctggacgaag atctctccaa gcagtgggca gaatggatgc tgcatctcca      4320
     gaaactgaaa aatgtgagct tacctcgatg ctactctggt tatagtaacg ccacatctat      4380
     acagttacat atattcagcg acgccagtga aacggcctac gcagcagctg catattggag      4440
     ggtggttgct ccggatggaa tggttcaagt aaacatgatc atggctaaag cgaaagtagc      4500
     cccgctcaag gttatgtcaa ttcctcgttt ggaactacaa gcagccgtca tgggagttcg      4560
     catagcggaa gctgtcataa aagaacatcg tatagcgccg gaatgcaaaa tcttttggac      4620
     agacagtaag acagttctga cgtggataag aaatggagcc agatcttata agccatttgt      4680
     cgcacataga ctagcagcca ttgaagaata taccaaagtg gaagaatggc gttgggtacc      4740
     ttctaagctc aatgtcgccg atatagccac tagagaagta ccatctgatt ttggagccga      4800
     tcatgaatgg tatcacgggc ctgccttctt gaaagaaaat ccgagtacct ggcctatcga      4860
     aaaaccggtc gtgtcaaaca atactggtga agaacatacc tttaccgtta aagaactcca      4920
     gccgaagaca aaattacgcg aagcaattcc tgatccacaa cgcttctcaa aatgggagcg      4980
     actacttcgt gccacagcta gagtcttgca atttttagat atctgcagaa ataaaaaaga      5040
     gaagatcttt tataagcgaa cacgtagaaa tatggaatct gatcctacgt ggaacaaacg      5100
     aagagaaaca ttggcaaaga aatctactac tctacatagc aagaaatcta tggattccaa      5160
     caattttctg atattagatt cgaaatacat tacaaaagca gaaaaccttc tcatccgaac      5220
     ttctcaacaa gaatcattca atgaagatat cacagacttg agatacaaca ggactattgc      5280
     caaacaaagt cgcctgcatt cattacccgt agaactccga gatgacattg tcgttcttcg      5340
     cagccgtata gccgccgccg agggaataaa agacgaaaca aagaaaccac aagtcttaga      5400
     tggagataac tacatcacac agctatatat tgattggacc caccgttgtc ttcaccacag      5460
     cagcactgaa ataatagtaa atgaagtacg tcaacatttt tgggtaattc gtcttcgtcc      5520
     caccgtgaaa aggatagttc atcagtgcct gaagtgtcgt attcgcaagg cacaaccgcc      5580
     acagccttct acgggtgatc atcccaaatc ccgtctcgcc catcatcgaa gaccatttac      5640
     atacccggct tagattattt tggccctctc acagtagtcg tcggcagaca acacgtgaaa      5700
     cgttacgtcg cactcttcac gtgtcttacc actagagcag ttcacctgga aatcgccgcc      5760
     agcctaagcg cagactctgc catacttgca ttgcgaagat tcgctgcacg tcgaggatgt      5820
     ccttccgaaa tttactcaga taatggtaca aacatgcatg gagcagacaa agaacttcga      5880
     gaagcattca aagaagaagc cagtcgtcga ggcatcgcat ggcgtttcat aacaccatct      5940
     gcaccattca tgggaggcgc gtgggaacgt cttgttcgct gcgtgaaaac agctctacat      6000
     acgattcttc gtgagagata tccccgagaa gaaattttgg ctacattact ctgcgaagta      6060
     gaatatactg tgaatagtcg tcccctcaca catgtttctg taaacaatga cgacgacgaa      6120
     tctataacac ccaatcactt tttacttggg ggttcagctc gtctacctct acctggcaca      6180
     tttagtgagg acgacattga tagcaaaaag cagtggagac gctcacagat attagcggac      6240
     atgttttgga gacgctgggt tcgcgaatat ctccctgaac ttcaacaccg gcgggagcct      6300
     catggtcgag gccctactta tgaaataggt gatccagtac ttatagccga ctcacaactt      6360
     ccaagaaata cgtggccaag aggacgcata gaaaaagtgt atccaggtgc agatggacaa      6420
     gtgcgaatag ttgaagtacg cactaagggt ggtctattga aaaggccaac caaaaaactc      6480
     gttccgcttc caaagtaaga agacgtcgtc gctcaccgcg ggaaagatgc agcatcacat      6540
     cgagacctga ttctgcacgg cgggagaaa                                        6569
//
ID   BEL-1_HMM-LTR repbase;    DNA;    INV; 1052 BP.
XX
AC   CAEZ01005117;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_HMM_;
KW   BEL-1_HMM-I; BEL-1_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1052
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01005117; Positions   14555   15606.
XX
SQ   Sequence 1052 BP; 302 A; 203 C; 204 G; 343 T; 0 other;
     tgttcgcgac aacgcgacgg cgcgagagcg catcatcggc cgtggactcg tcacgacatg        60
     tttcagactg tttcgttcgg caaaagtttt gttcgcgaca acgcgacgac gcgagagcgc       120
     aacatcggcc gtggactcat cacgacatgt ttgagactgt ttcgttcggc aaaagttttg       180
     aatgttatta ttagtgtttt ttctaaatta ataatgtttt atcctatata aataagtaat       240
     tacattaaat aataattata aatagatttg ggttccgttt tagataataa ttttcgtact       300
     ttatatcgta tttgtatagt tgtactatga tttgccgcga taatcgcctt ttatataata       360
     gtaacttccg tatagtaaat tttattattg attattgttt atcatagttt tctgtagctt       420
     aataacacat ttatatatac cgtatgtttg tgaataatta atgagagatg ttttatcgtg       480
     attacttgtg tgaatttcat catacttttc gtgtttttcg ttgtttccta atagttaata       540
     atttaatagt ataatgtatt atatatcgtt taataggcat ttttgtatac tttctatatg       600
     tataaattgt aagaacatcc gagttttagt tataaagata taaatgtaaa tgtaccgaaa       660
     tcatagtgaa aattttcgat aaataaagtc aaaacggctc ggtgactctc ggctcttttt       720
     accgttatcc gctccgaccg cctcgggtat aaaaggcgcg cgccgggcgg cacagcgtca       780
     gtcggcaacc aacagcgagc acagcaacaa gtcaaggaaa caaggaacat cggaaacaag       840
     aaacagttaa agaagccgac agtcaccgac cgttataccg cattcaagat cgtgtttcaa       900
     tatcctgctc caacctcctg tttcaacgtt cttatcagaa cgtctgacaa gaacgtcttg       960
     gggtctcagc atactccgtg tccccaagac ccgaacctat agtgtacagg gcgtcagcgg      1020
     ctcattcgct tgagttccgc ccgtccggta ca                                    1052
//
ID   BEL-1_LH-I  repbase;    DNA;    INV; 5973 BP.
XX
AC   ADOQ01001999;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_LH_;
KW   BEL-1_LH-LTR; BEL-1_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5973
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001999; Positions    9823   15795.
XX
CC   Positions [4904-5464] - Integrase core
CC   'AAATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..2085
FT                 /product="BEL-1_LH-I_1p"
FT                 /translation="MSALSATEARNKRKTIKAMVTRIRHFIEASDSTQLSS
FT                 FDLTERSKKLHNLWDQYDEIQTRIETLDLASNGDRDEAALHKHHSDERANF
FT                 ETTYFNLVACLEANIHNLERRENRENAEPQNSVAQLHNNPMSSQLRLPKIE
FT                 LPSFTGNSEDWYTFYDSFEKLINSNPHLSEIQKFHYLRSSLKGEAAEVIKA
FT                 FEITTENYKEAWELLIERYDNRRRIVQGHIKSLFDLPVMSKENHSQLRVLL
FT                 DGVCKHLRALRALERPVEQWDDLIIYLVTSKLDAATKKEWEISRSDSSIPT
FT                 FKQLKAFLLQRCLALEAIVSKSTSTSLTGNNVALPKTKRTVANAATANLAC
FT                 ECCKENHFIYQCDSFKKLPVDKRFKIVKNSRLCINCLKTNKHQAKTCPSSS
FT                 CRKCQKTHNTLLHFESNTEPEINQNVSSDDKEMSIPVVTQCSLQNPSKILL
FT                 STAIIHVEDSRGKAHACRALLDSGSQLNFVTEDFAKRLRLNKQFINMPISG
FT                 IA"
FT   CDS           join(2738..3823,3827..5830)
FT                 /product="BEL-1_LH-I_2p"
FT                 /translation="MREYQDLNHMNPIEVTAEHDNNIQYYLPHHAVLNNTS
FT                 TTTKLRVVFDASCKSKSGKSLNDALLVGPTIQQDLFSILSRFRTFRFAMTA
FT                 DIAKMYRQVLVDPSQRCLQRIFWRDTPQHKLKTFELATITYGTASASFLAI
FT                 RCLQELAQEGSTLFPIGSKIILRDFYVDDMLTGASTLNEALHIKEQTMALL
FT                 QKGGFKLRKWFSNNSLLQDECLAIDKEIDAGNECDKTRALGVFWNCKRDTF
FT                 NFVNSNNYQSSIKPTKRNILARIASIFDPLGFLGPVIVVGKLIMQELWLLK
FT                 IDWDESIPMDLITKWQDYEQQLKCLSNIEIPRKITVDEPKLLEIHGFADAS
FT                 QQAYGACVYLRSLSPNGEVGSYDRIQISCVFPVKSISIPRLELCGALLLAQ
FT                 LIDKLHRCLDLEIKATYYWTDSSIVLHWLRGVSRNWTTFVANRVGEIQSLS
FT                 LIENWRHVSSKENPADLLSRGVMPKLLAQSTTWWHGPEWLEGMDSGWPVSV
FT                 IDTPNNIPEKRGSSKSCSSFIVTLESKFDIFKKYSSYKKLIRIFAFCLRFI
FT                 NAIKHKQDKFNHKCSNDNLIKQAPPCSSEKLETAKLALVKMVQRSSFKREI
FT                 DDISKFGVVNRKSSVLKLNPYLDANGILRVGGRLKHSKLSYDAKHPILLPG
FT                 RHSFTRLIVIHEHTRLLHAGAQITLSAIRQNFWPCVGRSVVRNIISKCVTC
FT                 FRNVPKLSNTLMGDLPESRVSIFKRPFKKCGVDYAGPMYYKEGQRKNSRLV
FT                 KCFISIFVCFATKAVHIELVGDLTTETFLNALKRFISRRGRPSDIYSDNGL
FT                 NFVGAEHQLSELYDILNDDKSRRKIIENTSGERINWHFIPPRAPHMGGLWE
FT                 AAVKAAKFHIKRIIGEASLRYDEFLTLLVQIEVILNSRPLTPLSADPNDLS
FT                 VLTAAHFLIGCPITSYPEASLEGLNENRLTRWQRIEQLRQNFWRRWTKEYL
FT                 HNCQQRSKWNAVGVPVTVGQLVIVQEDNLPPLVWALGRIEETCPGDDGIVR
FT                 AALVRTAKGIYKRPITKLCMLPID"
XX
SQ   Sequence 5973 BP; 1854 A; 1208 C; 1212 G; 1699 T; 0 other;
     tggtccttcg agccggatta gtgattcgga ttggaaaata ttgagtttag caacgagtcg        60
     tgtacactca aggcatgcca agaatttctg gatgccatag agagattatt gttcgccatt       120
     attgaaagca cattacacgt gcatctcgca ttcgttgcta tttggttgca aagcaacgat       180
     ttatcgcaat ctcgagcgtc attctttgat tcccaacgga atattgaaac gcacgagtca       240
     tttacataac ctttcgacgt cattgcattg gactgaaaca gaagcacttc aaggtgtcca       300
     taacctcgga cgtaacgtgg atcggcacca gcatcggcac cagtcaagga acttttcgta       360
     ccgtcgacaa ttgaagtgag aggaacataa tacggtggat atttggacat tgccggcgct       420
     tcggacatcg catcaatcga gagcgtcaca tcgcatcgaa tctacacgca agtagtataa       480
     ggctagcgat acattgtagt gaaaagaatc tataacattt tgtcaattgt attagtcata       540
     atcttaggct atcgtttgtc aactaacagt tagtttatcg tcgttcacaa aatgtcagca       600
     ctctcagcaa ccgaagcgag aaacaagcgc aagaccatta aggccatggt cacgcgaatc       660
     agacatttca tagaggcctc ggattctact caattgtcaa gtttcgattt aacagaacga       720
     agcaaaaaat tgcataattt atgggatcaa tacgatgaga tacaaacgcg tattgaaaca       780
     ttagatctcg cgagtaatgg agatagagac gaagccgctt tgcataagca tcacagtgac       840
     gaacgtgcta attttgaaac aacgtatttc aatctcgtag cttgtctaga agcaaatatt       900
     cataatttgg aacgccgtga aaatcgggag aacgccgaac ctcagaattc tgtcgcacaa       960
     cttcacaata atcctatgtc gtctcaactt cgcttaccaa aaattgaatt accatccttc      1020
     acaggaaatt ctgaggattg gtataccttt tatgactcat ttgagaaatt gatcaattct      1080
     aatccacatc tttctgaaat ccagaaattc cattatttga gatcgtctct caagggtgag      1140
     gctgctgagg tcataaaggc attcgaaatc acaaccgaaa attacaagga ggcatgggaa      1200
     ctactgattg aacgatatga caatcggcga cgcatcgttc aaggtcatat caaatcgctg      1260
     ttcgatttac cagtcatgtc taaggaaaat cattcgcaat tgcgtgtctt actcgatggg      1320
     gtttgcaagc acttacgtgc gctcagagcg ttggaaaggc ctgtcgaaca gtgggacgat      1380
     cttattattt atttggtcac ttccaaattg gatgcagcca caaaaaagga gtgggaaatc      1440
     agtcgttcgg actcttcgat tcccactttc aaacagctca aggcttttct tcttcaaaga      1500
     tgtctggctt tagaagctat tgtaagcaag tctactagca cgtcccttac aggtaataat      1560
     gttgcattgc caaagacaaa aaggacagtg gcaaatgcag ccacagcaaa tcttgcatgc      1620
     gaatgttgta aagagaatca cttcatttat caatgtgact cgttcaaaaa attgcctgta      1680
     gacaagcgtt ttaaaatcgt aaagaattca cgtttatgca tcaattgtct aaaaactaac      1740
     aagcatcaag ccaaaacttg tccttcttcg tcttgtcgca agtgtcaaaa gacgcacaac      1800
     actctgttgc attttgaatc aaatacagaa ccagagatca atcaaaatgt atcttcagat      1860
     gacaaggaaa tgtctattcc tgtagtcaca caatgttcgt tacaaaatcc ctcgaaaata      1920
     ctcctatcta ccgcaataat acacgtagaa gattcaaggg gcaaggctca tgcctgccga      1980
     gcattattag atagcggctc gcagctaaat tttgtaactg aggatttcgc caaaaggttg      2040
     cgcttgaata aacaattcat aaatatgcca atttcgggca ttgcataggg tagtatcaat      2100
     gcaaaaaatt caatcaattt aacaatacag tctcgattta atagatatcg aaatcgatta      2160
     aattgcatta tcttgccgaa cataactcaa aaaattgcca caagacttta ttcatctttc      2220
     gcgattcaaa atccctccga atattcaatt agcagatcct aattttaacg tacctaatga      2280
     cattgatctc ttgataggag ccgaggtatt ttggcaactc ttatccatag gccatattaa      2340
     ggcgtgtcag gatcatccta caatccaaaa aacgaaactt ggttggattc tttcgggtca      2400
     tattcgttga ccctctcgtt caaagaaaaa gaaggctgct ctttgtcatg taagtacaat      2460
     tgacgatctt aacaaggcca tctccaaatt ttggcaagta gaagacaatt atcgtcataa      2520
     cacaaatgtc ttttcacctg aggagctcgc ttgtgagaca ctttttcagg aaagcactct      2580
     gcgaaatgat gagggtaggt tcatcgtcaa acttcccatc agaaatgata taatctcgca      2640
     agtaggcgaa tccagagaaa ttgcagaacg tagatttttc gcattggaaa gacgattatc      2700
     aaaacaacct gatatttatg aggagtatcg tagatttatg cgtgaatatc aggaccttaa      2760
     tcacatgaat ccgattgaag taacagcaga gcatgataac aatattcaat attatttgcc      2820
     tcatcacgca gttctgaaca atacaagcac cacaaccaag ctgcgtgttg tctttgacgc      2880
     ctcgtgcaaa tctaagtcgg gaaagtcatt aaatgacgct ttgcttgttg gtcctaccat      2940
     ccaacaggat ttattctcaa tcttatctcg ttttcgtaca tttcgctttg caatgacagc      3000
     cgacattgca aagatgtata gacaagttct tgttgatcca tctcagcgat gccttcaacg      3060
     tattttttgg cgtgatactc cacagcataa gttgaaaacg ttcgaactcg ccactataac      3120
     atatggcaca gcttcagcat cattcttagc tatacgctgt ttacaagaac tcgcacaaga      3180
     gggttcgact ttatttccaa taggatcaaa aatcattttg agagattttt atgttgatga      3240
     tatgctcact ggtgcttcca ctctaaatga ggctttacat atcaaggagc aaacaatggc      3300
     cctacttcaa aaaggtggct tcaaattaag aaagtggttc tcgaataatt ctctactgca      3360
     agacgagtgt cttgcaattg acaaggaaat tgatgcggga aatgaatgtg ataaaactcg      3420
     tgccttagga gtgttttgga attgcaaacg agacactttc aactttgtaa attctaataa      3480
     ttatcaatca tcaataaagc caaccaaacg aaacatttta gcgagaattg catcaatctt      3540
     tgatcccttg ggatttttag gccctgtaat agtagttgga aagcttatca tgcaggaatt      3600
     atggttgcta aaaatcgatt gggatgaatc aattcccatg gatcttatca cgaaatggca      3660
     agattatgag cagcaattaa aatgcttaag caatattgaa ataccccgca agataacagt      3720
     tgatgagcca aaacttcttg aaatacatgg ttttgccgat gccagtcagc aagcctacgg      3780
     ggcatgcgta tatctacgct ctttatctcc taacggtgaa gtttaaggct catatgatcg      3840
     catccaaatc tcgtgtgtct ttccggttaa gagtatctca atcccgcgtt tagagctctg      3900
     cggagcactt ttgcttgctc agctaatcga caaattacat agatgtttag atctcgaaat      3960
     caaggctaca tattattgga ctgactctag tatcgttctg cactggctaa gaggagttag      4020
     tcgtaactgg acaacctttg tcgccaatcg cgtaggcgaa attcaatcgc tatcattgat      4080
     tgagaattgg cggcatgtat cgagtaagga gaacccagca gacttacttt cgaggggcgt      4140
     tatgcccaaa ctgttagcac aatcaacgac ttggtggcac gggcctgagt ggttggaagg      4200
     tatggactct ggatggcctg tttctgtcat agacacgcca aacaatatcc cggaaaaaag      4260
     aggatctagc aaatcttgtt cctctttcat cgtcactttg gaatcaaaat tcgatatatt      4320
     taagaaatat tcaagctata aaaaactcat aagaatcttt gcattctgct tgcgatttat      4380
     caatgcaatc aagcataagc aagataaatt caatcataag tgttcaaacg ataacttgat      4440
     taaacaagca ccaccatgtt ccagtgaaaa gttagaaacc gccaaattgg ctctcgttaa      4500
     aatggtgcaa aggagttcgt tcaaaaggga gattgacgat atctctaaat tcggtgtcgt      4560
     aaacaggaaa agctcggtat taaagttaaa tccttatcta gacgcgaatg gaattctgag      4620
     ggttggtggt cgtctgaagc actcaaaatt atcatatgat gcaaaacatc ctattttact      4680
     acccggtcgt catagcttta cccggctaat tgtaattcat gaacataccc gattgcttca      4740
     tgctggggct caaataactc tgtccgcgat tcgacaaaat ttttggccat gcgttgggcg      4800
     tagtgtcgtg cgtaatatta taagtaaatg cgtaacctgc ttccgtaatg ttcccaagtt      4860
     atccaatacc ctaatgggag atttacctga atctcgcgtt agtatcttca agagaccctt      4920
     taaaaaatgc ggagtcgact atgcaggtcc gatgtattat aaagaagggc agcgtaaaaa      4980
     ttcgcgatta gtcaaatgtt tcatttccat atttgtatgt tttgcgacaa aggctgtaca      5040
     tatagaatta gttggcgacc ttactacgga gacttttttg aatgcgctga aacgatttat      5100
     ttcccgaaga ggtcgaccaa gtgacattta ctctgataat ggcttgaatt tcgtcggtgc      5160
     tgagcatcag cttagcgaac tgtacgacat tctcaatgat gataagtcaa gaagaaaaat      5220
     aattgaaaat acaagcggtg aacgtataaa ctggcatttc attccaccga gggccccaca      5280
     catgggaggg ctttgggaag cagcagtaaa ggccgcaaaa tttcatatca aacgcattat      5340
     cggagaggct tcattgcgct acgatgaatt cttgacacta ttagtacaga ttgaggtcat      5400
     tctcaactcg agaccgctta ctccattatc agcggatcca aacgatctgt cagttctcac      5460
     agcagcgcat tttttgatag gttgccctat cacgtcgtat ccagaagcaa gtctggaagg      5520
     attaaatgag aatcgattaa caagatggca acgcatcgaa caattacgcc aaaatttttg      5580
     gaggcgatgg accaaagaat atttacataa ttgtcagcaa cggagcaagt ggaacgcggt      5640
     tggagttcct gtgacagtag gacaattggt aatagtgcaa gaagacaatt tgcctccgtt      5700
     agtctgggct ttaggtcgta ttgaagaaac ttgtccagga gatgatggaa tagtgcgcgc      5760
     agcattagtg cgtaccgcta agggtattta caaacgccct attactaaac tttgtatgct      5820
     tcctatagat taagtctcgt cagcgtttat ttttccttgc gttcattcac atagtatata      5880
     agttttgctc aagttagcgt aatatcatat attttcatat gcactgattt tgggtttgtt      5940
     aattgaaagc actggctttc aaggcggccg gta                                   5973
//
ID   BEL-1_LH-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   ADOQ01001999;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_LH_;
KW   BEL-1_LH-I; BEL-1_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-223
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001999; Positions    9600    9822.
XX
SQ   Sequence 223 BP; 57 A; 49 C; 52 G; 65 T; 0 other;
     tgtgcgcgct tatttgtatc gcgcgccttt ttccgtgttt tgtttggctg cgtgagggaa        60
     acccctcaaa tatcgtgccc ctcctttagt gtgatgcgga tgagtgtgcc gcgcgccaag       120
     agtagtagta gaagcgcctc tctaagtgta tcacgacttg taaaaaatag cgtccgcata       180
     cgcaaggaat cttttaaata aagaaaccta ttaaaattat aca                         223
//
ID   BEL-1_LMi-I repbase;    DNA;    INV; 5535 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5535
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3069-3069 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           845..1582
FT                 /product="BEL-1_LMi-I_1p"
FT                 /translation="MLLPLVESCLPEDILRTWERNSSIALLGQSVTGCSGV
FT                 ESGATCVNGLNVNSKNRLSSLMHFIRCEVQQEQKIALAMSGFGVLSSVNVK
FT                 GSIKKRDKNLNYTNNQAENVPTAAGLLTASNRETTGCVFCSANHKSQDCFK
FT                 AQKMALQERRQALENKRCCFSCLKIGHPSKKCKNRPRCIICGRGHFVVMCD
FT                 KLQQSQVGSAVEKPNITGDKIVSTTQVQKDEALASLSNHCGVLMQTLVVKV
FT                 RGERN"
FT   CDS           join(1650..5186,5153..5479)
FT                 /product="BEL-1_LMi-I_2p"
FT                 /translation="MEMGYQISRQENIQHSLFGGTTTGVHKHCVYIIHLSS
FT                 MDGSYNCHFEALDQTRICGAIPSVHQGPWIEELSSQDIVLSDIDSYGPIEV
FT                 LIGADVAGKLFTGGHKVLSTGLVAMETRLGWILMGKVPSEHSNEESVAMMV
FT                 TAMITREARVSDLWTLDALGIMDPADKKSKLELQETVHQHFLNTVKINGDG
FT                 RFECCLPWIENHPPLPNNYNMALKRIHSTVKRLKSEGYYDAYQSVLDEWIQ
FT                 EGVIEEVPEETMNAPCHYLPHRHVVKQNSTTPVRPVFDASACENKNPSINS
FT                 CVEKGPNLIELLPSVLARFRLKRIGVVADIRHAFLQISICKGDRPFLRFLW
FT                 IDRQGTLKFYQHCRVVFGVTCSPYLLGAVIKYHLQTVLDQCKKGTSYYSQD
FT                 LVELLSQSFYVDNCVTSVDDVDQLQQFMDEATSIMRERKFELRGWEFTNPS
FT                 MPLGKPTSVLGLLWDKSEDNLYINVDKVNSICXEKITKKIILSVAHRIFDP
FT                 IGVACSVTLLPKLLLQQTWESGIGWDQEVNEDIKSQFLTWMRDLPYLGEIK
FT                 IPRWLPGPDSQGNWTIHIFCDASQHSYAAVAYLRVEHQDQVRVQLILAKAR
FT                 VSPISKRKKKMTIPRLELLAATIGSRMYSNIVQDFNISGVKTIFWSDATTI
FT                 LAWIQREDQWDVFISNRVKEIRELTEGHEWRHVPGTMNPADLPSRGATAKK
FT                 LLESRWWEGPSWLRDPSSTWPMVDVQYDEEEITRGKKKSIVSSMLTATVES
FT                 DWYYARFSTFEQSVRLIGWLYRFMKNCQTKEHDRFCGNLTTEELVMAELKV
FT                 INMVQKQAFSGVNDXKLSNLVPFIDSNGIIRLMTKVSHRKDLNSFCQPAVL
FT                 PNSKHPVVFRLIMDLHKKSCHAGPQMMLTLLREKFWILRGRQTIRSVLDKC
FT                 FQCKKQTVKHLEVYPASLPEDRVRNAKIFEVTGVDLAGPLYLKMKKDRNKK
FT                 AWVCLYTCGVYRAVHLELISSLSTDSFIQSFRRFISRRGRPSLVYSDNGTN
FT                 FAGTDNAFKKLDWDAINLYSTARRIKWKFNPPTASWWGGWWERLIGILKRL
FT                 LRRVLGRTSVCYEEMQTILCDCEAVINARPLTYVSQNPSDLIPLTPSMFLQ
FT                 EVEEIGVPDFDLVESTDLNKRLRYRQKLREDLRRRFRSEYLGQLMLLANRQ
FT                 QHRQISVGEIVLVGMTTQNANSAGGNDNTKRIEWPLARVVELLKGPDGETR
FT                 LVRVKTSSGLLLRPVQRIYPLELELGQQGESTLIGRRLREEIAEPPRKENM
FT                 TITEETPRELVETRSGRTVRKPIKLNL"
XX
SQ   Sequence 5535 BP; 1714 A; 966 C; 1306 G; 1547 T; 2 other;
     tttggcaccc gaacggggac cggcacgatt ttaaacagtt aatagatacc acgatattgg        60
     aaaaatgaca gctgatatag cagtgacgaa gaaatcaagg tctgtattac ggcggtcgat       120
     gaccaagata tacaatgaac tagacgcgtt actacagatg ccagagaaag acgcggatgg       180
     tattcgtgca catatggatc ttctagaagc gaaatatcag gaattaacag gtatggataa       240
     tcttatcttt actaatatga ttgagaacgt ggagagccaa gatgacgagt tagacaaaga       300
     agtcaattca gctgacgaat ataagtttaa atttcacaag attaaggctg ttgttacgaa       360
     attgttacag gaagacgatc taaattctga agctagtgca gtatcagtta attatagttc       420
     gtcatgacaa gttaagcgtt ctttcaaatt gcctttgttg gaattgaaga agttcggagg       480
     tgaactaaaa gattggcttc ctttctggtc gcaatttagg aaaattgatg aggaccctct       540
     tttagaccct agtgacaagt tccagtacct catacaggcc accatttctg gatctagagc       600
     gagagaattg gttgagagct ttcctgctac cggagaaaat tacggtaaag tgatatcaag       660
     tcttaaagct cgttatggga aagacgattt gccagtggaa ttttacatta gggaattgtt       720
     aagtttaatt ttgcagaatg ctgtgagccc taataagata tctttatcct ctctctatga       780
     taagcttcag agccacatag aagccctagg aacattaggt gttacaacag acaaatgtaa       840
     ttccatgctt ttaccgttag tggagtcatg tctgcctgag gatatattac gaacctggga       900
     aagaaattct tcaatcgcac tccttggcca gtctgttaca ggttgttcag gtgttgaatc       960
     aggggctact tgtgttaatg gcttgaacgt gaactccaag aatcgtttaa gtagtttaat      1020
     gcactttata agatgtgaag tacaacagga acaaaagatt gctttggcta tgtcaggttt      1080
     tggtgttttg tcttcagtaa atgtcaaggg gagtataaaa aagagggaca agaatttgaa      1140
     ttacaccaac aatcaggcag agaacgttcc tacagctgca ggtctcttga ctgcatctaa      1200
     tagagaaaca acagggtgtg tattttgctc agctaatcat aagtctcaag actgttttaa      1260
     ggcgcagaag atggctttgc aagaacgtcg tcaggcactg gagaataaaa gatgctgttt      1320
     ctcttgtctc aagattggac atccatcgaa gaaatgcaaa aataggccta gatgcattat      1380
     ttgtggtcga gggcattttg tggttatgtg tgataagttg caacaatccc aagttggctc      1440
     agctgtagag aaaccaaaca taacaggaga caaaatagtt tctactacgc aagtacagaa      1500
     agatgaggcg ttagctagtt tgtcaaacca ttgtggggtg ttaatgcaaa cactagtggt      1560
     caaagttcgg ggggaaagga attgagcgta ctgtaagagc attgattgat tcagcatcgc      1620
     aacgttccta cattttgaag agtacagcca tggaaatggg atatcaaatc agcagacagg      1680
     agaatataca acactcgcta tttggaggta caaccactgg agtacataag cattgtgtgt      1740
     atattattca tctctctagt atggatggta gctacaactg tcactttgag gcattagacc      1800
     aaacaagaat ttgcggtgcc ataccttcag tacatcaagg tccttggatt gaggagctca      1860
     gtagtcagga cattgttttg agtgacattg attcttacgg accaatagaa gtattaattg      1920
     gtgctgatgt tgcaggaaaa ttgtttacag gaggtcacaa ggtattaagt actggactag      1980
     tagccatgga aactcgtttg ggatggattt taatgggtaa agttccttca gaacatagta      2040
     acgaggaaag tgtggctatg atggtgacag ctatgataac aagagaagcc cgtgtttcag      2100
     atttgtggac tctagatgca cttggcataa tggaccctgc tgataagaaa agtaaattag      2160
     aactacaaga gactgttcat caacacttct tgaatacagt aaagattaat ggagatggta      2220
     gatttgagtg ttgcctacct tggatagaaa atcatccccc actacctaac aactacaata      2280
     tggctctaaa gagaattcat tccacagtta aaagattaaa atctgaaggt tactatgatg      2340
     catatcagtc tgtattggac gagtggatac aagaaggtgt aatagaagag gtacctgaag      2400
     aaacaatgaa tgctccctgc cattatcttc cacatcgtca cgtagtgaag cagaatagta      2460
     ccacgcctgt tcgtcctgtg tttgatgcat cggcatgtga aaacaagaat cccagtatta      2520
     acagttgtgt tgaaaaggga ccgaatctca tagaactact tccttcagta ttggctcgtt      2580
     tccggttgaa gagaattgga gtagtggctg acatacggca tgcctttctg caaatcagca      2640
     tttgtaaagg ggaccgtcca tttttgagat tcttgtggat tgaccgtcag ggtaccttga      2700
     agttttatca acactgtcgt gtagtgtttg gagtgacatg tagtccatat cttcttggag      2760
     cagtaatcaa ataccacctg cagactgtac tggatcagtg taaaaagggt acatcatatt      2820
     attctcaaga tttagtagaa ctgttgtctc agagttttta tgttgacaat tgtgtgacca      2880
     gtgtagatga tgtagaccag ttacagcagt tcatggacga agcaacttcc ataatgagag      2940
     agagaaagtt tgagcttcga gggtgggagt tcacgaaccc ctctatgcca ttaggaaagc      3000
     ctaccagtgt cttaggattg ttgtgggata agtcagagga taatctgtac atcaatgtag      3060
     acaaggtaaa ctccatttgt stagagaaga taaccaagaa gattattctg tcggtagcac      3120
     ataggatttt tgaccctatt ggagtagctt gtagtgttac cttgcttcca aaacttctct      3180
     tacaacagac atgggaatca ggtataggtt gggatcagga agtgaatgag gacatcaaat      3240
     cacaattctt gacctggatg agggatttgc cttacttagg agaaatcaaa attcccagat      3300
     ggctaccagg gccagattcg caaggaaact ggacaattca tatcttctgt gatgcaagtc      3360
     aacactcgta tgcagccgta gcctaccttc gtgtagaaca tcaggatcag gttcgcgtcc      3420
     agcttatcct tgctaaagca agagtctctc caatcagtaa gcgtaagaag aaaatgacaa      3480
     tcccgaggtt ggaattgtta gctgcaacaa taggttctag gatgtactct aacattgttc      3540
     aagattttaa catcagtggt gttaagacaa tattttggag cgatgcaact acgatcttag      3600
     cctggattca aagagaagat caatgggatg tgttcatatc caaccgagtt aaagaaatca      3660
     gggaactgac tgaaggacat gaatggagac acgttcctgg caccatgaat cctgcagacc      3720
     tgccttcccg tggtgctact gctaagaagc tgttagaatc aagatggtgg gagggaccta      3780
     gttggctacg agatccatca agtacatggc ccatggtaga tgtgcagtat gatgaagagg      3840
     agattactcg tggaaagaag aaaagtattg tttcttccat gctcacagct acagttgaat      3900
     ctgattggta ttatgctcgc ttttctactt ttgaacagag tgtacgtcta attggttggt      3960
     tatatcgctt tatgaagaat tgtcaaacaa aagaacatga ccgattctgt ggcaacttga      4020
     caacagaaga attagtgatg gctgagctta aagttataaa tatggttcag aaacaagctt      4080
     tctctggagt gaatgacama aagttatcta atttggtccc atttattgat agtaatggaa      4140
     ttatacgcct aatgacaaaa gtctcgcata gaaaggatct aaacagtttt tgtcaaccag      4200
     ctgtactgcc taattctaag catcctgttg tatttcgcct gataatggat ttgcataaga      4260
     aatcatgtca tgcaggtcca cagatgatgt tgactctcct tagagaaaaa ttttggatac      4320
     ttcgtggaag acaaactatt cgatcagttc tggataaatg ctttcagtgc aagaagcaaa      4380
     cagtcaaaca tttagaagtt tatccagcat ctcttcctga agacagagtg cgaaatgcta      4440
     agatatttga agtcactggt gtcgatttag caggtccact atacctcaag atgaagaagg      4500
     accgtaataa aaaggcatgg gtgtgtttat acacttgtgg agtgtataga gcagtacatt      4560
     tggagcttat atcttcattg tcaactgaca gtttcattca gagttttaga agatttatta      4620
     gcagaagagg tcgaccatct cttgtctata gtgataatgg taccaacttt gctggaactg      4680
     ataatgcatt taagaaattg gactgggatg ctattaacct ctacagcact gccagacgaa      4740
     ttaaatggaa gtttaatcct ccaactgcat cctggtgggg tggttggtgg gagcggctta      4800
     tcggaatact gaagagacta ctgcgtcgtg tcctaggtcg aacatcagtt tgttatgagg      4860
     agatgcagac aattttatgt gactgtgagg cagtgataaa tgctcgtcca ctaacttatg      4920
     tgtctcaaaa tcctagtgat ttgattcctt taacccctag tatgttctta caggaagttg      4980
     aagagatagg agttcctgat tttgatttag tggaatccac tgatctaaat aagaggcttc      5040
     gctaccggca aaagctgcga gaagacctcc gacggagatt tcgttctgaa tacttgggac      5100
     agttaatgtt attagccaat agacaacaac atagacaaat ttcagttggt gaaatagtgc      5160
     tggtgggaat gacaacacaa aacgcataga gtggccattg gcaagagttg ttgaactctt      5220
     aaagggtcct gatggtgaaa ccagactggt cagagtgaag acctcaagtg gtttgcttct      5280
     gagaccagtg cagagaattt atccactgga gctagaactt ggccaacagg gtgaaagtac      5340
     actcatcggc agaagacttc gggaggaaat tgctgaacca ccccgaaagg agaacatgac      5400
     catcaccgaa gagactccca gggagttggt ggagacaaga tctggacgga cggttcgcaa      5460
     acctataaaa ttgaatttgt gattgtggtg taagttaccg ttggaatgac caccattaac      5520
     ttaggtggga gaaga                                                       5535
//
ID   BEL-1_LMi-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-186
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3070-3070 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 186 BP; 59 A; 21 C; 31 G; 74 T; 1 other;
     tgtggaaaaa ggcccacttg tcatacctgg aaaactttga aatatataaa agtgttttgc        60
     tttgttsttt tatattatat gccatgcttt tgatttttta gtacgttatg ttgaaaaata       120
     ataaatgttc attgaaagag gaattgcact cttgatttaa cgtatttttt aagtgaattc       180
     cgaaca                                                                  186
//
ID   BEL-1_MoPha-I repbase;    DNA;    INV; 6095 BP.
XX
AC   .
XX
DT   13-SEP-2021 (Rel. 27.02, Created)
DT   13-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6095
RA   Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1128-1128 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..5791
FT                 /product="BEL-1_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MASEQAMSLLKKKRGIIKGQLSKFTTFVDRFTDAGSV
FT                 TELVARLEKAEALWSEFDKIQTEIELADDSEAQAGHRDAFEASYFVVIARA
FT                 RELGQTNPDVQPQTNHACNNSNQNVQLPTLKLPEFDGEYSKWMQFSDTFRA
FT                 IIHNNATLTITQKFYYLRSCLSGDAARALDTLEASDANYDIAWNILKERFE
FT                 NKNIIIHNHVKALFDLPQVIKDSHASLRDLSDSMSQHLRALESLGQPVESW
FT                 DSIIIFLITTKLDLASRNEWEKMSVKRKELPSIDSFKIFLNERCQILERLF
FT                 KDTKQTDKRNSNKDSKNTTKAGSLTHLAANVAKCMFCKGSHSIYFCKDLLS
FT                 LPVDKRLTQVRKLKLCTNCLRNNHFSKDCRASGCKKCSGKHNTLLHFGDSK
FT                 VEHETNNQSSSNINKAVDNDKASINQESAITTHAVQAAHNSYILLATARIV
FT                 IFDNNGRSHPCRALLDNGSQSNFITSKLAQKLGLAKTPIKIPICGVNQNIT
FT                 HISHRTEASIKSLYNNYKAKLSVLVVDNITQDLPNRFYNISALNIPEGLSL
FT                 ADPRFNYPEPVDILLGAGIFWELLCAGQIQLGEGRPFLQKTKLGWIVSGPM
FT                 APRCKESESLCHLNTIQDIRDSLERFWKIEECLSTPNLTREESECEDLFVK
FT                 TMKRDEQGRFTVRLPFRANADKLGDSLDMAIKRLYSLEKRLAKDSSLKEQY
FT                 VSFMNEYLELGHMTEVKSSDRDLESVYYLPHHSVVKESSITTKTRVVFDAS
FT                 AKTSTNLSLNDVLMVGPVIQDSLFAILIRFRMHKYVFTADVTKMYRQVNVH
FT                 EAHRDFQRIIWRPDERERIRHYRLNTLTYGTAPASFEAIRSLRQTAVDKQS
FT                 VFPDASNIILSDFYVDDLISGANTVKDALRLAHEIDTILRGGCFHLRKWNS
FT                 NSEAFINAIQTEPGSNQIHLTQDTNSKTLGLSWDAKKDMLNYQANAISNKS
FT                 NRVTKRTILSVVSQLFDPLGLVSPTIVLGKIIMQKIWKLGIGWDEALPLDL
FT                 FTLWSQFCEDMKFINEVSIPRYTMGHQCRVLELHGFSDASEIAYGACLYVR
FT                 AVDKTGKIITKLLCAKSRVAPVKTISLPRLELCGAVLLARLHQQVIEALSR
FT                 LPNWKSDSFYWCDSTIVLSWIATESSLLKTFVANRSAEIQRLTDSKRWAHV
FT                 AGSENPADIVSRGMSLSKLATSQLWWNGPPWLGLGSNHWPITDNTCIPVPS
FT                 ELKESKIACITIKSDWDVFNRFSSYLKLLKVMAYCLRFIDNIRKGVSERRF
FT                 GSLSVDELNKSLLTLVKIVQITHFAPEINSLERENAVRSSSKILSLNPFLD
FT                 EYRILRVGGRLKNSKLQYEHKHPMLLPNKHVFTQMLITYEHEKQMHAGLTS
FT                 TLAAIRTRFWILNARSTVRKIIFRCMICFRTAPKGESYQMGNLPESRVNAD
FT                 RPFTVVGIDYAGPFLVKDGKLLNRKLVKCYLCIFVCFSTRAVHLEVVGDLT
FT                 SDSFLNSLKRFVSRRGICKHIYSDNATNFVGAKNELGEVFNLLNQIDRDSK
FT                 FVNFLSQNLIQWHFIPPRAPNFGGLWEAAVKSAKYHIKRIVGEAHLTFEDL
FT                 YTVITQIEAIMNSRPLMPMSNDPNDMDILTPGHFLIGEQLTSVPQSSVVEL
FT                 PTNRMNQYQRLQQMVQHFWSRWTSEYLSHLQQRSKWMKDVPSKVKVGSMVL
FT                 LKEDNTPPLQWKLGRITELHPGADGVPRVISVKTFTGILKRTIGKICILPI
FT                 EESM"
XX
SQ   Sequence 6095 BP; 1932 A; 1159 C; 1402 G; 1602 T; 0 other;
     tggtccttcg agccggatat ccggtacctg gatgttcgac aaggaacgaa acgcacaagc        60
     agcgaagtcg agggttatgg cgtcgcatgg aaacagcaaa gggtgcacca taacaacgaa       120
     tcaagaaatc aagagttgca ctacaactgc cgattaagca agcttgagtg gtgcagtaag       180
     cataaaggcc tcgtgctaag caagggtacg tacgtaaccc tcacacacaa cgaatcgaaa       240
     gtaagcatct cctcatcaac gagcaacggg cgaccgccgg gaataacacg tggccgccgt       300
     aagcagcacg cagcagccgt aagcagcacg cagcagccgg aagcagcacg tagtcgccat       360
     aagcaacacg gtaccgccgg aggaagcgcg agcaccggac cgtgaggggg ctcgacggtg       420
     cagacgaagg agcgacggcc atattggaag cagaccagag ggaaagcgcg ttcgcaaagg       480
     caacaagtcc agagtacgtt cggttgtggt atgtaagtga gattagagtg gctcgcgttg       540
     attgtttgta agttcacggt aaatatttga gtgatcaccg gtaatattaa attgtatttg       600
     cgtaataaca ttaatcggaa tggcgagcga acaggcaatg agtttgttaa aaaagaaacg       660
     cggtatcatt aaaggtcaac tgtctaagtt caccacattc gtcgatagat tcacggacgc       720
     gggaagcgtg acggaattgg ttgctcggtt ggagaaggct gaagcgttat ggtcggaatt       780
     tgataaaata cagactgaaa tcgagctagc ggacgattcg gaggcgcagg caggtcatcg       840
     cgacgcgttt gaagcgtcat attttgtagt gatagctagg gctagagagt taggacagac       900
     gaatccagat gtacagccgc aaacaaatca cgcgtgtaac aattcaaatc aaaacgtgca       960
     actacctaca ttgaaattac cggagtttga cggtgaatat agcaagtgga tgcaatttag      1020
     cgatacgttt agagcaataa ttcataacaa cgctacttta accattacac aaaaatttta      1080
     ctatttgagg tcgtgtttaa gcggagatgc cgcgcgggcc ttagacacat tagaggcatc      1140
     ggatgcaaac tacgacattg cttggaatat tttgaaagaa agatttgaaa ataaaaatat      1200
     cataatacac aatcacgtga aagccttgtt cgatttaccg caggttatca aagattccca      1260
     cgcgtctctg agggacctgt ctgatagcat gtcgcaacat ttgcgcgcat tagaatcgct      1320
     agggcagccg gtagaaagct gggactcgat aataattttt ctgattacaa ctaaattaga      1380
     tttagcatcg cggaatgagt gggaaaaaat gtcggttaaa cgcaaggagt tacccagcat      1440
     tgatagtttc aagatatttt taaacgagcg ctgtcaaata cttgaaagat tattcaaaga      1500
     tactaaacaa acggataaac gcaattcaaa taaagattca aagaatacca caaaggcggg      1560
     ttcgttaact catttagcgg caaacgtagc aaaatgcatg ttttgcaagg gctcacatag      1620
     catatatttt tgtaaagact tattaagctt acccgttgac aagcgattaa cacaagttag      1680
     aaaattaaag ttatgcacga attgtttgag aaataatcat ttcagcaagg attgcagagc      1740
     aagcggctgc aaaaaatgca gcggcaaaca caatacctta ttgcattttg gcgattcaaa      1800
     ggttgagcac gaaacgaata atcaatcctc atcgaatata aacaaggcag tagataacga      1860
     caaagcaagc ataaatcagg agtcagcgat aactacacat gcggttcagg cagctcataa      1920
     ttcgtatatt ttattggcaa cagcgagaat tgttatattt gataacaatg gtagatcaca      1980
     tccctgtcga gctctattag acaatggttc tcaatctaat tttatcacga gcaaattagc      2040
     gcaaaaatta gggctagcga aaacacccat aaagattccg atttgcggag ttaatcaaaa      2100
     cataacccat atttcgcaca gaactgaagc gtctattaaa tcgttatata acaattataa      2160
     ggccaaatta tccgttttag tagttgacaa cattacacag gatctaccga atagattcta      2220
     caacatctcc gcgttaaaca ttccggaggg tctctcattg gcggatccgc gtttcaacta      2280
     tcccgaacca gtagatattt tgttaggtgc tggtatattc tgggagctct tgtgcgcggg      2340
     acaaatccag ttaggtgaag gcagaccatt ccttcaaaag acaaaactag gttggattgt      2400
     gtcagggccc atggcgccta gatgtaagga gtcagaatcg ttatgccatc ttaatacaat      2460
     acaagatatt cgcgatagtc tagaacggtt ttggaaaatt gaagaatgtt tgtcaacacc      2520
     aaatttgaca agagaggaat ccgagtgcga agacctattc gtaaagacca tgaagcgtga      2580
     cgagcaaggg cggtttacgg tacggttgcc ttttcgagca aacgcggaca aactcggaga      2640
     ttcgttagat atggcaatta agcgacttta ctcattggaa aaacgattag ccaaggattc      2700
     tagtctcaaa gagcaatacg ttagcttcat gaatgaatac ttagagcttg gtcatatgac      2760
     cgaggtaaag tcaagcgaca gggacctcga gtcagtgtac tatctaccgc accacagcgt      2820
     agtaaaggaa tcgagcataa ctaccaagac acgcgtggtt tttgatgcat cagcgaaaac      2880
     gtcaacgaac ttgtcgctga atgacgtctt aatggtcggt ccagtcattc aagacagttt      2940
     attcgcgata ctgatcagat ttagaatgca taagtacgtt tttaccgcgg atgtaacgaa      3000
     aatgtacagg caagttaatg ttcatgaagc ccatcgagat tttcaacgca tcatttggcg      3060
     tccagatgaa agagaacgta tacgtcacta tcggttaaat acattgacat acgggacagc      3120
     tccggcttca tttgaggcta tacggtcact tcggcaaaca gctgtggata aacagagtgt      3180
     attccctgat gcatcaaaca taattttatc ggatttttat gtcgacgatc ttatttcggg      3240
     agctaatacg gtgaaagatg cgctgagact tgcgcatgaa atagatacga tattgcgcgg      3300
     cggatgtttt catttgcgca aatggaatag caatagcgag gcctttatca atgcaataca      3360
     aactgaaccg ggtagtaatc aaatacattt aacgcaggat actaattcta aaacgcttgg      3420
     tttgtcttgg gacgctaaga aagatatgct gaattatcaa gcaaacgcga ttagtaacaa      3480
     atcgaatagg gttacgaaaa gaacgatatt gtcagtcgtg tcgcaattat ttgatccgct      3540
     aggattagtt agtcccacaa tcgttttggg aaaaattatc atgcagaaaa tatggaaatt      3600
     aggaatcggt tgggacgaag cattgcccct cgacttattc acgctatgga gtcaattctg      3660
     tgaagatatg aaattcataa acgaagtttc tatacctaga tacacgatgg gtcatcaatg      3720
     cagggtatta gaattgcatg gttttagtga cgcgtccgaa attgcatacg gagcgtgcct      3780
     atacgtacga gcggtggata agaccggtaa gattatcact aaattattat gtgctaaatc      3840
     gcgcgtggca ccagtaaaaa caataagttt gccgcgtctt gagctgtgtg gtgcggtatt      3900
     actggcacgt ttacatcagc aagtaatcga agcattgagt cgccttccaa attggaagtc      3960
     tgatagtttt tattggtgtg actctactat cgttttatcg tggatagcta ccgaatccag      4020
     tctattaaaa accttcgtag caaatagaag cgcggaaata cagagactta cagacagtaa      4080
     gcgttgggcg catgtcgcgg ggagtgaaaa tccagcagat attgtatcta gaggcatgag      4140
     cttatctaaa ctagcgactt cgcaattatg gtggaacggg ccaccatggt tagggctagg      4200
     gtcgaatcat tggccaatca cagataatac gtgtattccc gtgccttctg aattgaagga      4260
     aagcaaaata gcatgcatta cgattaaatc tgattgggat gtcttcaatc gtttttcatc      4320
     atacttaaaa ttacttaagg taatggccta ttgcttgcgt tttatcgaca atatacgaaa      4380
     gggcgtgagc gagaggcgtt tcggttcatt atcagttgat gaactaaaca aatcattgct      4440
     cacactcgtt aaaatagttc aaattacaca ttttgcaccc gaaatcaata gtttagaacg      4500
     cgaaaatgcg gtgcgatcta gcagcaaaat cttatcgtta aatccattct tagatgagta      4560
     ccgcatttta cgagtgggtg gtcgattaaa aaactctaaa ttgcagtacg agcacaagca      4620
     ccctatgctg ctaccaaaca agcatgtgtt cacccagatg ctcataacat atgaacacga      4680
     aaaacagatg catgcgggat taacgagtac gttagccgcg attagaacgc gtttttggat      4740
     tttaaatgct cggagcacag tgaggaaaat aatcttccgt tgcatgatct gcttccggac      4800
     agcccctaag ggtgaaagtt atcaaatggg aaacctaccc gaatctcgtg tgaacgcgga      4860
     caggccattc acagtggtcg gaatagatta cgcgggaccg tttctggtta aagatggcaa      4920
     attactaaat cgaaaattgg tcaaatgtta tttgtgtata tttgtttgtt tttcaacaag      4980
     agccgtacat ctggaagtcg tgggcgactt aacaagcgat tcgtttctaa attcactcaa      5040
     gcgatttgtt tcaaggcgtg gaatatgtaa gcatatttac tctgataatg ccactaattt      5100
     tgttggtgcg aagaatgagc tcggcgaagt tttcaatttg ttaaatcaaa tagatagaga      5160
     tagtaaattc gtaaattttt taagtcaaaa cctgatacag tggcacttta ttccaccgcg      5220
     tgctcccaat tttggaggtc tctgggaggc ggcagtgaag agcgctaagt atcacattaa      5280
     aagaatagta ggcgaagcgc atttaacgtt tgaagatttg tatacggtga tcactcaaat      5340
     cgaggctatc atgaattctc ggccgttgat gccaatgtcc aatgatccca atgatatgga      5400
     tattctaaca ccggggcatt tcctaattgg tgagcaactc acgtcagtac cacaatcgtc      5460
     cgtcgtagag ttgcccacga atcgaatgaa tcaatatcag cgattacaac agatggtaca      5520
     acatttttgg tcacgttgga ccagcgaata cttgtcacat ttgcaacaac gttccaaatg      5580
     gatgaaggac gttccctcaa aggtcaaagt gggtagcatg gtactcctga aggaagacaa      5640
     cacaccacca ctgcagtgga agctggggcg tattacggaa ctgcatccag gagcagatgg      5700
     cgtacctcgc gtaattagtg ttaaaacctt taccggaatc ttaaagcgaa caataggaaa      5760
     gatatgtata ttgcccattg aggaatcaat gtaataaata agcgttaagt taatgttaag      5820
     ggattagttt ctcggcaatt aatctttcag caaacaaggt tattatgagt agaattcaac      5880
     tcaatatata agcattggct attttgatta tttggttatt actctgcgag agatatccat      5940
     aagtgaacat gtatgttttg ttacctttat tattatttca cttgttaata gaagtagatc      6000
     tcgttattgt ttgtttattc agatacgaag aatttagttt gataagttaa tataattcat      6060
     tttgattgaa agcagtcctt tcaagaggcg cggta                                 6095
//
ID   BEL-1_MoPha-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   13-SEP-2021 (Rel. 27.02, Created)
DT   13-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-295
RA   Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1147-1147 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 295 BP; 86 A; 68 C; 62 G; 79 T; 0 other;
     tgttccgaac cgatagtcac gggataagtg gacctattta tccgccgata tgtaataagt        60
     cctagtgtac gtgattataa aaaataacgc ataggtggcg tgcaacaggg tcctcgcgat       120
     cggcacgcgg ctcgttaact tcacttccgc ttggtacacg cgtgcgagag cacgcgcgat       180
     atatagtaat aaatttttga gttccttgtt gacaaacgtc ttcattcatt ttatacatca       240
     caccgtcaag agaaaataag gatctccagg cattccagat ccacaaattc ataca            295
//
ID   BEL-1_PBa-I repbase;    DNA;    INV; 5465 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   24-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_PBa_;
KW   BEL-1_PBa-LTR; BEL-1_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5465
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 669-669 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4471-5079] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           994..5427
FT                 /product="BEL-1_PBa-I_1p"
FT                 /translation="MLDRPGSAFHREESNYRGVAANSRRGNETPRSLGRID
FT                 NSRVAGRNEASRSAGRSEARTSRNNQTVSLAVSTVVGRCFICGGPHLIYSC
FT                 ERFLNPSVRERIDEVKRLKLCFNCLRNDHFVSACRASSCRQCARRHNTLCH
FT                 TEQEEPRVDKVTSNIEAVNGEGRKNKKANVNSSVHHTTSRAGFGEILMSTA
FT                 IVYVKDSNVFDRPIRVLLDSASEANFITRAACAKLNLKLEDIREAVSGIGS
FT                 SICTINHGCQVTIKSRITTYLLSAFCLVVPKITRELPSVAVNSDAFSITDT
FT                 LNLADPQYHRPSQIDMLLGGEFFLKLLEPARVELGNNLPTLQNTKFGWIIS
FT                 GRIPAQYIKREGISQINCLVTQSSLNKSLVKFWEIEDCSSRDNAILSSEER
FT                 TCEEIFKGTHTRDTEGRIVVRLPFRDNKHKLGESRSIAERRLLYLERKFRS
FT                 NNMYRQLYIEFMREYISLRHMTIVPRITAMTSEAVYLPHHGVYRESSISTK
FT                 LRVVFDASSKTSSGLSLNDTLMVGATLQDPLINIILRFRAHPVVITADIQK
FT                 MYRQILVDENDRDYQRILWRFSPDEPIQEYRLNTVTYGQSCAPFLAIRSVR
FT                 QLASEAESQYPQASRVLLQDLYVDDILTGVDNVNEADILIKELTELLKLGQ
FT                 FKLHKWRSNYNELLLKTNKIDDETDFQAITDERDVTKTLGIRWQPSSDELR
FT                 FESQFMHNAKSKRSVSSAISKLFDPLGLASPIIIKAKLIMQFMWQMSLGWD
FT                 DDLPAGLRQTWLEYVQDLRKIHTTRIPRRVVGVRNPVHISLHAFCDASERA
FT                 YGTCIYVRAIDDANRVASRLLCAKSRVAPVKKLTIPRLELCGAVLLVDLMR
FT                 IVRESLTIGIHKIYAWSDSSIVLTWIAGEPSRQKTFVGNRVSKIQSILPSS
FT                 HWGHVAGTENPADLISRGINFDNFHSNSLWWTGPPWLSEFEDPYQGKGELS
FT                 DQEFDIIQSEEKGNMRVFVARANSESIIETMFSKFSSLTKIERVLAWCYRF
FT                 ITNSRDNFENRNFGNLSVRDLHLSQLKLIKHVQEQFFARELDDLNNDRVNR
FT                 SSALAHMSPFLDNDGILRVGGRLQRSAINHDKKHPILLPARCRFVELLFER
FT                 EHCRMLHAGPQALLSSIRERFWPLNGRNTARRITRRCVTCFRVKPRLSDQI
FT                 MGPLPPDRVTACQRVFSIVGIDYAGPIVTVANKGRGQRSRKSYIALFICFS
FT                 TKAVHLEAVSELTSSAFLAALRRFVSRRGYPQKIYSDNATNFVGAKRELEE
FT                 LYRTIRTFSKSIEEYCTSQSIEWKFIPPHAPHMGGIWEAGIKSCKYHLKRV
FT                 VGETRLVFEEFMTVLAQIEACLNSRPLCQLSSDPNDLQALTPAHFLIGGPL
FT                 ISLPDINVLDVPINRLDRWQLTQRITQHFWKRWSVEYLTSLQGKCKWTIER
FT                 ENLAVNDIVLIVSDNMPPLQWKLGRIIELHPGVDKRVRVLTIQTENNVIKR
FT                 PVTKVCKLPIDEK"
XX
SQ   Sequence 5465 BP; 1701 A; 1000 C; 1291 G; 1473 T; 0 other;
     tggtccttcg agccggattg agaataaggc aattaacaat tacgattaac gattaagcaa        60
     ctgcgaaaat gagcgcgcaa gaattacgcc gccaacgagg atatatcaag gcaaaacaaa       120
     cacatatttg gaagtttgtg gaaaacgtgg caaaccagag gacatcgccg agcatcgaaa       180
     cggtcacagt atattcaaaa aaattagagc aagtgtacaa ggaatttaac gaaatacagc       240
     ggcaattggt atgcgttatc gaggagaatg agctgccaat tgaagatcaa cgagaagacg       300
     atgtatttga agaacgatac gtagaattga gtgcaacatt gtcgagatgg gctgctgcaa       360
     ttaaaccgac tgtaagtaca actaacggtg gcgaatcact tgcacaagtg atagagcagc       420
     aggcagaagt aattagagcg attaggttca aatggttcac aaattgatac tagagtcaaa       480
     ctgccggtaa tcaatttgcc aatcttttcg ggagaaatag aggactggac acggttttct       540
     gataccttta ccgcattaat tcacaacggc gatttatcgg caattcaaaa gctgcaatat       600
     ttggtcggtg cactgacggg aagcgcggca aaaatcatcg aatcaatcga gatttcggca       660
     cagaactacg aagtggcctg gaatcttcta aggaaccgtt acgaagataa gaaagcttta       720
     aagcgaagac atgttcaatg tttatttgaa gcgcctaagg tcgagcgaga atcagccgtt       780
     gatattcaag aattaattaa tcatttccag aaacatcttc gaattgtaaa atccatggag       840
     tccaccagtg aaacatgggc ggattctttg atattatata tggtggagaa gaagctggac       900
     agagttactc ggcgccgctg ggaagagagt atggaaggtt gacaaactgt tacagtcgat       960
     ttattatttg actttttaca gcgacgtgtg caaatgcttg atcgaccggg cagcgcattc      1020
     cacagagagg aatcgaacta tagaggagtg gcagcgaact ccagacgagg caatgaaaca      1080
     ccgaggtcgt tagggagaat tgacaattcg agagtcgctg gaagaaacga ggcctcaaga      1140
     tctgcaggaa gaagcgaggc aaggacatct agaaataatc aaactgtaag tttagccgtg      1200
     tcaacagtcg tcgggcgctg ttttatatgt ggcggtcctc atttaatata ttcgtgcgaa      1260
     agatttttaa atccgtctgt gcgagaaaga attgacgaag ttaagcgatt gaagctttgt      1320
     tttaattgtt tacggaacga tcattttgtc agcgcttgta gagcgagttc ctgtcgacaa      1380
     tgcgcgagga ggcataatac attgtgccat acagaacaag aagagcctcg agtagacaag      1440
     gttacttcaa acattgaagc ggttaacgga gaaggtcgca aaaacaaaaa agcaaacgtt      1500
     aattcgtcgg tacatcacac aacgagtcgc gcgggatttg gcgaaatctt aatgtcgacg      1560
     gcaatagtat acgtaaagga ctcgaacgtg ttcgatcgac ctattcgcgt tcttcttgat      1620
     agcgcgagcg aagcgaattt tataacaaga gcagcctgcg ctaaattaaa tttaaaatta      1680
     gaggacattc gcgaggcagt ctcgggcatt ggtagttcga tttgtacgat aaatcacgga      1740
     tgtcaagtaa cgataaaatc aagaataacc acttatctat tatctgcatt ttgtttggta      1800
     gtgccgaaga ttactagaga actgccttcg gtggcagtta atagtgatgc tttttcaata      1860
     accgacacgt taaatttagc cgatccgcaa taccaccgtc cgagtcagat cgacatgctg      1920
     ttgggcggcg aattcttttt aaagttatta gaacctgcaa gggtcgagct cggaaataat      1980
     ttgccaacat tacagaatac gaaattcggt tggattattt caggtcgaat cccagcacaa      2040
     tatataaaaa gggaaggaat tagtcaaatc aattgtttag ttacgcagag ctctttaaat      2100
     aaatctttag ttaaattctg ggaaatcgag gattgttcga gtcgcgataa tgcaatttta      2160
     tcgagtgaag aacgaacatg cgaagaaata tttaaaggca ctcatacgcg agacacagag      2220
     ggcagaattg ttgtacgatt gcctttccga gacaataagc ataagcttgg cgagtcgcga      2280
     tcgattgcgg aaagacgatt gctctattta gaacgtaaat ttcgaagtaa taacatgtat      2340
     cggcagttat atatagaatt catgcgagaa tacataagtc taaggcatat gaccatcgtt      2400
     ccgagaatta ctgctatgac aagcgaggct gtttatttac ctcatcacgg cgtttatcgc      2460
     gagtcatcta ttagcacgaa gcttcgcgtt gttttcgacg cctcgtctaa gactagctca      2520
     ggtttatctt taaatgacac gttaatggtg ggtgctactt tacaagatcc actaattaac      2580
     attattttac gttttcgagc gcatccagtg gtaattacag ccgatataca gaaaatgtac      2640
     cgacaaatcc tcgtcgatga gaatgatagg gactatcagc gaattttatg gcgcttttcg      2700
     ccagacgagc caattcaaga atatcgacta aacacggtaa cttatggaca atcttgtgca      2760
     ccatttttag caataagaag cgttcgacaa ttggcgagtg aggctgaaag tcagtatcct      2820
     caagcatcac gagtcttgct tcaagattta tacgttgatg atattttaac gggagtagat      2880
     aatgttaatg aagcggatat tttaattaaa gaattgacag aattattaaa gctcggacaa      2940
     ttcaaattac ataagtggcg atcaaattat aacgaattac tccttaaaac gaataaaatt      3000
     gatgatgaga ctgactttca ggctataact gatgagcgag atgtaacgaa aacattaggt      3060
     attcgatggc aaccgagcag cgatgaattg cgattcgaat ctcaattcat gcataacgcg      3120
     aagtcaaagc gaagcgtatc gtctgctatt tcaaagttat tcgatccgtt gggattggcg      3180
     agtccaataa tcataaaagc aaaattgata atgcaattca tgtggcaaat gagtcttggt      3240
     tgggatgacg atttaccggc aggtttgcgc cagacgtggc tggagtatgt ccaagatcta      3300
     agaaaaattc atacaacgcg aataccgaga cgggttgtgg gcgttcgaaa tccggtgcat      3360
     atcagtctgc atgcgttttg tgacgcatca gaacgagctt atggtacgtg tatttacgtg      3420
     cgagcaattg atgatgcaaa tcgagttgcg tcgagattgt tatgcgctaa atcacgcgtg      3480
     gcgcccgtta aaaaattaac catcccgcga ttggagttat gcggagccgt tttgttggtc      3540
     gatttgatgc ggattgttcg tgagtcgtta actattggga ttcataaaat ctatgcgtgg      3600
     agcgattcgt caattgttct tacgtggatc gcgggtgaac cgagtcggca gaaaacattt      3660
     gtcggtaata gggtcagcaa aatccaatct atcctgccta gcagtcattg ggggcatgtt      3720
     gcaggtacag aaaatcccgc ggacttaatc tctcgaggca ttaattttga caattttcat      3780
     agcaattcat tgtggtggac aggtccaccg tggctttcgg aattcgaaga tccatatcaa      3840
     ggcaagggcg aactttccga tcaggaattt gacatcatac aatcggaaga aaagggaaat      3900
     atgcgagttt ttgttgctcg agctaattcc gagtcgataa tcgaaacaat gttttctaaa      3960
     ttctcatcat taactaaaat cgaaagagta cttgcttggt gttatcgatt cattacgaat      4020
     tctagagaca atttcgagaa ccgcaatttt ggtaacttat ccgtgaggga tttgcatctg      4080
     tcgcaattaa aattaattaa acatgttcaa gagcagtttt ttgcaaggga gttggatgac      4140
     ttaaacaacg atcgcgtaaa tagaagcagc gcgcttgcac atatgagtcc atttttagat      4200
     aacgacggga ttctcagggt gggcggcagg ttgcagagat ccgctattaa tcatgacaaa      4260
     aaacatccga ttttgctgcc ggcaagatgt cgattcgttg aattgttatt tgagcgagaa      4320
     cattgtcgta tgctacatgc cggtccacaa gctttgcttt cttcaattcg ggaaagattt      4380
     tggcctttga acggccgcaa cactgctcgt agaataacaa ggagatgcgt aacgtgtttc      4440
     agggttaagc caaggttgtc agatcaaata atgggaccgt tgccacctga tagggttacc      4500
     gcttgtcaac gagtattttc gatagtggga attgattatg ctggccctat tgttacagtt      4560
     gcgaataagg gccgaggaca aagaagtcgc aaatcatata ttgcgttgtt catatgcttt      4620
     tcgactaaag cggttcattt agaagcagtc agtgagttga catcgagtgc gttcttggct      4680
     gcattgcgcc gctttgtgag cagacgaggt tatccgcaaa aaatttatag cgacaatgcc      4740
     actaatttcg tcggcgcaaa aagagagctt gaggaattat atcggacaat cagaacattt      4800
     tccaaatcga tagaggagta ttgtacatct caaagcatag aatggaaatt tattcccccc      4860
     catgcgcctc acatgggtgg tatttgggaa gcaggaataa aatcatgtaa ataccattta      4920
     aaaagagttg ttggcgaaac gcgactcgtt ttcgaggaat ttatgactgt tttagctcaa      4980
     attgaagctt gcttaaattc aagaccgcta tgtcaattgt cctctgatcc taacgactta      5040
     caggctttga cgcccgcaca ttttttaata gggggaccgc ttattagtct gccagatatc      5100
     aatgtattag acgtccctat taacagactt gacagatggc aattgactca gcgtataact      5160
     caacattttt ggaagcgatg gagtgtcgaa tacttaacgt cattgcaggg caaatgcaaa      5220
     tggacgatcg aaagagaaaa tctagctgtt aatgacatag tcttaattgt aagcgacaat      5280
     atgccaccct tgcagtggaa acttggcaga ataatcgaac ttcacccggg agttgataaa      5340
     agggttcgcg tgttaactat tcaaaccgaa aataatgtta tcaagcgtcc agtcactaaa      5400
     gtttgtaaat tgcctatcga tgaaaaataa aattaatcag gattaattgg tgggcgggat      5460
     gttgg                                                                  5465
//
ID   BEL-1_PBa-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   24-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_PBa_;
KW   BEL-1_PBa-I; BEL-1_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-280
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 670-670 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 280 BP; 104 A; 40 C; 61 G; 75 T; 0 other;
     tgactaaata ataaatttaa tctgtaactg ttgctccgaa ttgtgagcga actcgacatg        60
     tattacaaat cgatatattt gcgagcgaga taacaaatga gagaccacga cgtgtcattt       120
     gcttattagg taggataata tttgatattg tataaataga caagcgtgcg aaaagacggg       180
     gagtcgagat tgagtaagcg aactgagcaa attgtaataa tacgcaaaat aaagacttta       240
     gttggagaaa cgattcgagt atctaataca agcccgtaca                             280
//
ID   BEL-1_PPo-I repbase;    DNA;    INV; 2147 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2147
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2956-2956 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..1303,1231..1737)
FT                 /product="BEL-1_PPo-I_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="LQGLIRGPPGYPLAQNTRFGWILSGEVEEAGSHSEKC
FT                 HNIIVSLHSAHSNENXLSRKFWELESDHYDVEKTFLTEEEQLCERLFAETT
FT                 HREESXRYIVSLPFRTSDPKCKYGDSKQIAQKRFLILEKRXLRDPDMKKEY
FT                 IKAINEYLDLGHXEKVETKEKADAVYLPHHAVVRNDKLTTKXRVVFGASCP
FT                 GTICXVADIIKMYXQXKVSERDXDSQRILWRENPEDXLQHFRLLRVTFGTS
FT                 SAPYLRTILQRWSTNSXELLNHXQEDHLRATEEHLELIKQVSIPRLELYAL
FT                 AWLRXHSSRWKTFIANRVSXVLTVLDGDQWCHVSTXQNPADCASRGAXPSV
FT                 RPEVKIWKQGPAFLKXINIDYKREVMGTXXEEXKLKCHTTTSNKTESSILT
FT                 KYSALTRLTRVVAYCRXFLSPNFGGLWEAGVKFTKHHLGEXVFVSKFWRIV
FT                 GGRSEVHQTPSRRIVSNSTLTFEEMTTVLAEIEACLNSRPISQLPTYPDDP
FT                 YPLTPGHFLIGEPLVVVPDRNYEDSNVSSLKRWHLTQRMLQDFWRRWSQEY
FT                 LTQLQHRYKWTDQVSEPKVGDVVLIREDDLPPAKLFFLALSIKSILVWTTL
FT                 RGLLA"
XX
SQ   Sequence 2147 BP; 610 A; 411 C; 485 G; 612 T; 29 other;
     gttgcaaggg ttgattaggg gtccaccggg ctaccctctt gcgcagaaca ctagatttgg        60
     ctggatcctg tctggtgaag ttgaagaagc aggcagccat tctgaaaagt gtcacaacat       120
     tattgttagt ttgcactcag ctcattcaaa cgagaatgwg ctctcacgga agttctggga       180
     gttggagtct gaccattacg atgtcgaaaa aacattttta acggaagaag agcagttgtg       240
     tgaaagattg ttcgcggaaa cgactcatag agaagaatct sgtcgttaca tcgttagctt       300
     gccctttcgc acatcggatc cgaaatgtaa atatggcgac tcgaaacaaa ttgcccagaa       360
     aaggtttctt attttagaaa agcggttwtt acgagaccct gatatgaaaa aagagtacat       420
     caaggcaatc aatgaatact tggatctcgg ccatgasgag aaggtcgaga ctaaagaaaa       480
     agcagatgcg gtttatttgc cacatcacgc agtagtgcga aatgataagc ttaccaccaa       540
     gkcgagagtt gtcttcggtg catcgtgtcc sggaacaata tgtstcgtkg cagacataat       600
     taaaatgtat sgacagktta aggtgtctga aagagatgkc gactctcaac gcatcctgtg       660
     gcgtgaaaac ccagaagats agttacagca tttccgtctt cttcgggtga ctttcggcac       720
     atcctcggct ccatacttac gtaccatact tcagcgttgg tccaccaata gtwcmgaatt       780
     gttgaatcac awacaggaag atcacctacg agcaaccgaa gaacacctgg aactcatcaa       840
     gcaggtgtcg attccgaggc tcgagctwta cgcactggct tggctcagga gmcactcwag       900
     tcgttggaaa actttcatag ccaatagagt gtcggamgta cttacsgttc tggatggaga       960
     tcagtggtgc cacgtatcga cgaakcagaa tcctgccgat tgcgcgtcca gaggcgcaaa      1020
     mccatcagta cgccctgaag tcaagatttg gaagcagggc ccggcgttcc tgaaasakat      1080
     aaacattgat tataaaagag aggttatggg tacaamaatk gaagaaakaa agctaaaatg      1140
     tcacactacw acaagcaata aaacagagag tagtatactt accaagtatt cggcgttaac      1200
     acgacttacc agagttgtag cttactgtag aakgtttttg tctccaaatt ttggaggatt      1260
     gtgggaggca ggagtgaagt tcaccaaaca ccatctcgga gaatagtaag caatagcaca      1320
     ctgacgttcg aagagatgac caccgtttta gctgagattg aagcctgttt aaattcaagg      1380
     ccaatctccc agttaccgac atacccggat gatccatacc ctctgacccc tggtcatttt      1440
     ttgataggag aaccactagt tgtggtccct gataggaact atgaggactc aaatgtctcc      1500
     tcattgaaga ggtggcatct tacgcagcgc atgcttcaag acttttggcg tagatggtca      1560
     caggagtatc ttactcagtt acaacatcgg tacaaatgga cagatcaggt ttcggaaccc      1620
     aaagtaggcg atgttgtgct tattcgtgaa gatgatcttc caccggcaaa gttgtttttt      1680
     ttggcgttat cgataaaaag catactggtt tggacaacct tacgagggtt gttagcgtaa      1740
     gatgcaaggg cagtgtcata aagcgaccat tgtcaaaatt agtaatatta cctgtcactt      1800
     aattattaaa tttagtattt tgtattatac agtccactag aataattgct atcattgtaa      1860
     tcataagttt tgtttgtgtt taattttaat ttttatcttt ctcgatttta tttatgttgc      1920
     aatgtcaccg tacaattgtt ttactatgtt tatgtttgtt atttctttag ttattcatta      1980
     agtttgttct tgtatacttt ttcgttccgg catggtgggc ggacagttgc tattatttaa      2040
     tttgattttg cgcccgatta tggagcattg tacaactgcc tgtaattttg taaatgtctc      2100
     aaatttttgt atatttgtga tggacatgct gtccatggtg ggcggta                    2147
//
ID   BEL-1_PPo-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_PPo-I;
KW   BEL-1_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-210
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2957-2957 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4bp TSDs.
XX
SQ   Sequence 210 BP; 50 A; 38 C; 46 G; 75 T; 1 other;
     tgttaatgtc ttgtaaagca aattgctaat aaaatgtagt tttataactc atcactagat        60
     ggcgctgtac tgtttaagtg cccactatag gtttgccgcg ttgttatkat gcgcttgcga       120
     caagcgacga ataaagttgg ctcattcacc cgatactgaa gttttatttt accgcttcgg       180
     tctgttcggg gttttttggg attctgtaca                                        210
//
ID   BEL-1_RP-I  repbase;    DNA;    INV; 6975 BP.
XX
AC   ACPB02040023;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_RP_;
KW   BEL-1_RP-LTR; BEL-1_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6975
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02040023; Positions    7048   14022.
XX
CC   Positions [6010-6597] - Integrase core
CC   'ACGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           633..2198
FT                 /product="BEL-1_RP-I_2p"
FT                 /translation="MEESLEKVTPPVSPVPSVSPSLEETPRASTQPEASES
FT                 LNAIRCRHLVARLDQWARSVQLLDLDSPDRVARCQQFSALFQSLSQTVDRE
FT                 AWEWLRLLAPEDSGPLALALSASHAQAELAHLSIVLPALATPLMMENVPTS
FT                 SPPSPVPDDSVSELARRQLQELVIPRIPVFGGEVLSYREFKRTFQSEVHKL
FT                 ALSPAKRLQALRSCLRGPPLSIIQNATLTEAGYLYAWETLDGRYEGRLRIA
FT                 SAMLEAFLQFPAAGSSMEDIIAWLSGRQILLDHCDIPEPLDFLLCHVSLSV
FT                 LSPGLQEEFRKKCLGSFDELPRSGQVLDFLKQQEDRFSPKLVPLQKMSHSS
FT                 AQSGPSQASAPFTPSSGPAPPVDEPQVVEVPSPNQFRPYRPKSVSFVPRTP
FT                 RRPSPTPSPAPVRRSTPSTSCAPASSVSSIRCYFCGGPHRLSRCDRYLQLS
FT                 GKDRWSFVAEERLCVNCLSKYHQVSRCPCQVGCGKCHGEHHTTLHPPPQSS
FT                 SVCQEARSASHLPSLMSLRTCPASRI"
FT   CDS           2542..6939
FT                 /product="BEL-1_RP-I_1p"
FT                 /translation="MSVSPTAMVYLLGGDSQWYRARALLDSGSEINLMSAT
FT                 FAKECKLSYSPMSGAIRGIGGNIATQVVGFVSTNLKQCPPFSQLKVPFRVV
FT                 TKTVPDAPSSYFPVGDWVHLANKYLADPTFNEPSPVDVVFSASVFDALDLS
FT                 QMIRSQNGSPNARLTTLGWVMSGPLKRLPVKRVRFHPSVQNHMSNSKLYRT
FT                 YYKILFKHKYGHLIPSKVPNNESNPEDKTPTSTPPGEYESEPVAHRNNPEL
FT                 IMEPEQSVTPSRSSSSAQILSTLEEEVTPQPCARPTLDIPLPPPKPQRLNR
FT                 TRRPLQILTSPDSESFPPTTISAEASSSENSTLPVKSSLCNPVSVVSIQPT
FT                 VLRFSSVKSSQPSQHPPDQVLSRLMEKMFALEEVSEVSPLTPEELKAEECF
FT                 SKSHSRLPDGRFSVALPLKTSPCCLGESRKVALKRLLQTESRHAKSPHLRP
FT                 PYVEFMRDYLESKHMELAPPLKSGQVTYYIPHHAVHRPDDPPEKIRVVFNA
FT                 SQKSSSGVSLNELLLPGPRLQLDIWKVVTRFRVDRWVFTADIRQMFRQILH
FT                 PPEDRDLLRILWRFDTSQPVQEYRLCTVTYGTTSAPYLACRVLQELALTSQ
FT                 IPFPKQQRSLRDRTSVDDVSGGGPTFEAALESRDQLIRLLSQAQIELRKWA
FT                 ANHPRLLEKIPLDHLLPAMSSVCLENDEESQLKILGLCWNPSQDYFHFLIR
FT                 SVPNIQTKRQLASQIAKVFDPLGWLIPITVFARAIFRVVCQASFSWDDPLP
FT                 SSIIQEWSQFAVTLPELSNIRIPRFLSLSTPKFYLTGFADASERAYAAVVY
FT                 LVSLSEETVISLIMSKARMAPMKPVTLPRLELCAAHLLALTLHKVSLLFPQ
FT                 IPSPNIFAFSDSTIALAWITATPPPHWKVFVGNRVAAILEKVPASQWFHVP
FT                 SSQNPADCASRGLKPQELVNHPLWWEGPPWLKLNPESWPLRQVNADLSDPM
FT                 VGAEIRSQALNVSIAVSSPEDLESKFSNLHTLINVVAWCLRFAHNARNSAH
FT                 HISGPLKVKERGEALRALIVRAQRHSFLEEIEDAQSSRPKLRLVRILGLFI
FT                 HTDGVLRVGGRLRQANIPESNKHPALLPQQHPLTALVIQDAHVSNLHVGPT
FT                 ATHAFLRNRYWITNGKNVVRRQLSSCNKCFSIKPSPFNPIMGQLPEGRASA
FT                 SPPFTTTGIDYAGPFNVKIASLRSAKVLQCYLAIFICFSTKAIHLELVTDL
FT                 TTQAFLAALNRFIARRGMPSHIWSDNGTNFVGATRRLKEVSALLNDSQCQE
FT                 SILRESGRRGVEWHFIPPRAPHFGGLWEAAVKSTKRLLKVTLGLQEPTMEC
FT                 LLTIICQVEAILNSRPLTTLSSSPDDLQVLTPGHFLIMRPMTALPTSDSLN
FT                 QRTALKSKWAMAQFTVSQFWKRWHREYLLDQQAMIKWHSPSFPAAEGQIVT
FT                 IMDDNLPPLQWSLGRITKLHYGRDDVARVAEVKTASGVISRPVRKLCPLPN
FT                 Q"
XX
SQ   Sequence 6975 BP; 1647 A; 1930 C; 1439 G; 1959 T; 0 other;
     tggtgccgaa acccgggaac actcaagata cctattaaat aaataagtaa ataaataaat        60
     aattacataa ttttttgtgt tctgtttaga cttatagtaa ttttcatttg tttatatata       120
     tatatgaata tacttgtagc ttagaaatac acagtcatat tttaatttcg ctttaaaatt       180
     attttttgga acatcgttca tattttatat tgttcatatt ttttcattgt gatctagcct       240
     gaagtcaagt tattcttgga atttacaaat gtattgtttt agtcactcat aggttacgtc       300
     ttgcctttgc cttgtggctc cgtatttttt gtgttaatta taatgtcaaa ttaaatattt       360
     cgtttgcact ataaaccttg tttattctcg tattctgtat ttactattca acaattattt       420
     atatatataa tttttttttg tccgtgttgt tctgtcaagt tcttgttcaa cttgttttat       480
     aattatacta atttgttttt tgttaaattt atactatttt aaatttatac tgttttacaa       540
     atttatacta tcttttgtat tgtgtattta tattttgtat tttgtatttt ttttgtcgac       600
     aagagttatt agttgtgtcc aattttagga tcatggagga gtccctggag aaagtcaccc       660
     cccctgtttc gccagtcccg tcggtttccc cctcgttgga ggaaactccc cgagcttcca       720
     cccaacctga ggccagcgag agtctcaatg ctatcagatg tcggcacctc gttgccaggt       780
     tggaccagtg ggctcggagt gttcagttgt tggacctgga ttccccagac agagttgcaa       840
     ggtgccaaca gttctccgct ctctttcaat ccttgtccca gactgtggac agggaagcct       900
     gggagtggct tcgactgttg gcgccagagg atagtggtcc cttagccctg gcactgtctg       960
     ccagtcatgc tcaggcagag ctcgcccatt tgtctatcgt cctccctgcc ttggctacac      1020
     ccctcatgat ggaaaatgtg ccgacttcct caccgcccag tcccgttccc gatgattctg      1080
     tgtcagagtt ggcgcggaga cagcttcagg aactggtcat ccctagaatt cccgtgtttg      1140
     gaggggaagt attatcatat agagagttca aacggacctt ccagtcggag gtccataaat      1200
     tggctctctc acctgccaag cgacttcagg cgttgcggtc ttgcctgagg ggtccaccct      1260
     tgtcgatcat tcagaatgcc accctgacgg aggccgggta cctctacgct tgggagacat      1320
     tagacggccg gtatgagggg aggctaagaa ttgctagtgc catgctggaa gccttccttc      1380
     aattcccggc cgctggctcc agcatggaag atatcatcgc ttggctgtcg gggcgacaga      1440
     ttctcctcga ccactgcgac atccctgaac ccctggactt cttgttgtgt catgtctccc      1500
     tgtctgtcct gtcccctggc cttcaggagg agttccggaa gaaatgcctt ggttcctttg      1560
     acgaattgcc ccgcagtggt caagtattgg actttctaaa gcagcaggaa gacaggtttt      1620
     cccctaaact ggtcccctta cagaaaatgt cgcattcatc tgctcagtct ggtcctagcc      1680
     aggcttccgc cccctttact ccttcatccg gtcctgcccc tccggtcgac gaaccacagg      1740
     tggtggaggt cccttcgcca aaccagttta gaccgtatcg ccccaagtca gtcagttttg      1800
     tcccccgcac accgaggagg ccttcaccta ccccttcccc ggctccagtt cggcgctcca      1860
     cgccttctac gtcctgcgcc cccgcctcct cagtctcttc aatccgatgc tacttttgtg      1920
     ggggaccaca tcggttgtcc cgctgcgaca gatatttgca attgtctggc aaggataggt      1980
     ggagttttgt cgcggaggaa cgcctgtgtg ttaattgcct gtctaaatat catcaagtat      2040
     cccgctgtcc ctgccaggtg gggtgtggca aatgtcatgg cgagcaccac accaccttgc      2100
     acccccctcc tcagtcttcc agcgtatgcc aagaagcacg aagtgcctcc cacctgccgt      2160
     ccttaatgtc cttgaggaca tgtcccgcct ccagaatcta agtcctcttc caaacaagcc      2220
     tcttcaccct ctcaatccag atcttcacct ccttttccca aacgcccact ccttcccccc      2280
     agttcctttg agcctctact gtcagtcagg gactctgatt ccagacctac gtcatcatcc      2340
     tcgggcagca tatcccctgt ccttcccata acctattttg gccgacatcc agcaccaacc      2400
     ccccagtcag atttataggt tcttggcagg cacgataccc ctcccttatc cagtgtcgtc      2460
     ttctgtcgtc gtagacattg tcgtttatgt catgctacga aagcctcccg aaaatcaata      2520
     ttcaagtctt tcccatccga catgtcagtt tcccccactg ccatggtgta tctccttgga      2580
     ggagatagcc agtggtatcg tgctcgtgcc ctgctggatt caggcagtga gattaatcta      2640
     atgtcagcaa ccttcgccaa agaatgtaaa ctgagttatt ctcccatgtc aggtgctatc      2700
     cgaggaatag gaggaaatat tgccacccag gtcgtgggtt ttgtgtcaac taatttaaaa      2760
     caatgcccgc cattttccca acttaaagtt ccctttcgcg tagtcactaa gacagttccg      2820
     gatgctccat cctcgtattt tcctgtcggt gattgggtac acctagcaaa taaatattta      2880
     gccgacccga ctttcaatga accaagccca gtagacgtgg tattttcagc ttcggtcttt      2940
     gatgccctcg atctcagtca gatgattcgc tcacaaaatg gctcccctaa cgcacgattg      3000
     acaacccttg gctgggtcat gtctggtccc ctgaaaaggc tacctgttaa aagggttcgt      3060
     tttcaccctt ctgtccaaaa ccacatgtct aactccaaac tttatcggac ctattataaa      3120
     atattattta aacataagta tggtcattta atcccctcta aggtacctaa taatgagtct      3180
     aatcctgaag acaagactcc aaccagcacc cctcctggtg agtatgagtc tgagccagtt      3240
     gctcatcgta ataaccctga acttatcatg gaaccagaac agtcagttac tcctagccgg      3300
     tcttcgtcct ctgctcaaat tttgtcaacc ctcgaagagg aagtcactcc tcagccttgt      3360
     gctcgcccaa ccttagacat tccgctccct cctccaaaac cacaacgttt aaatagaacg      3420
     cggcgtccgc tacaaattct taccagcccg gattctgagt cttttcctcc taccacaatt      3480
     tcagcggaag cttcttcttc tgaaaattct accttgcctg ttaagtcttc cttatgcaat      3540
     cctgtgtcgg ttgtctctat ccaacctact gtactccgct tcagctcagt aaaatcctcc      3600
     caaccaagtc agcatccccc cgatcaggtc ctgtcccgcc tcatggaaaa aatgtttgcc      3660
     ctggaggaag tatctgaagt ctctcccctt acgccagagg agttgaaggc cgaagagtgc      3720
     ttctctaagt ctcactctcg actccctgat ggtcgctttt cagtagcact gccgctcaaa      3780
     accagtcctt gttgtctcgg cgagtctaga aaggttgctc taaagcgcct tcttcagact      3840
     gagtctcgcc atgcgaagtc tccacatctt cgccctccct atgtcgaatt catgcgagac      3900
     tacctagagt cgaaacacat ggagctagct cctcccctaa agtcgggtca agttacctat      3960
     tacatacccc atcacgcggt acatcgccca gatgaccccc cggagaagat cagagttgtc      4020
     ttcaatgcct ctcagaagtc ctcatcaggc gtttccctca atgagctctt actccctggc      4080
     cctagattac agcttgacat ctggaaggtt gttaccagat tcagagttga caggtgggta      4140
     tttacagccg atattcgtca aatgtttcgt caaatattgc acccccctga agacagagac      4200
     ctattacgta tcctttggcg ctttgatacc agtcaaccgg ttcaggagta cagactgtgt      4260
     actgtcacgt atggaaccac gtcagcgccc tacttagcat gtcgcgtgtt acaagagtta      4320
     gccctcactt cgcagattcc tttccccaag cagcagagat ccttaaggga tcgtacttct      4380
     gtcgatgacg tctccggagg cggccctact tttgaagcgg ccctggaatc gagagaccaa      4440
     ctcataaggt tactaagtca agctcaaatc gagctcagaa aatgggcagc caatcaccct      4500
     cgactgttag aaaaaattcc tctcgaccac cttctcccag caatgtcttc cgtatgtcta      4560
     gagaatgacg aggagtcaca attaaaaatc cttggcctct gttggaaccc ctcacaagac      4620
     tatttccatt ttttgattcg ttcagtcccc aatattcaaa ctaaaagaca attagccagt      4680
     cagatcgcaa aagtttttga tccattggga tggttaatcc caataacagt ttttgctcgt      4740
     gcaatatttc gagtcgtttg tcaagcctcc tttagctggg atgatccttt accttcatcc      4800
     attatccaag aatggtctca gtttgctgtc acccttccgg aactctcaaa tattcgtatc      4860
     cctagattct tgtccttgtc tactcctaaa ttttatttaa ccggttttgc tgatgcatcg      4920
     gaacgggcat atgcagccgt agtgtacctt gtgtcacttt ctgaggaaac agtcatcagc      4980
     ctgatcatgt ctaaagccag aatggctcca atgaaacctg ttacgctccc acgcctcgag      5040
     ctttgtgccg ctcatctcct ggctctcaca ctccataaag tcagtcttct cttccctcag      5100
     ataccctctc caaacatttt cgccttttcc gattctacca tagctcttgc ctggataacc      5160
     gctaccccac ctccacattg gaaggtgttt gtaggcaata gagtggctgc cattttagaa      5220
     aaggtacccg cttcccaatg gtttcatgtc ccttcatcgc agaaccctgc ggactgtgcc      5280
     tcacgtgggc taaagccaca ggagttggta aaccacccct tgtggtggga aggccctcct      5340
     tggctaaaat tgaaccctga gtcatggccc ctaagacaag taaatgcaga tttgtcggac      5400
     ccaatggtgg gggcagaaat tcgctcccag gctcttaatg tatcgatcgc agtctcctcc      5460
     cctgaggatt tggaatccaa gttctccaat ttgcatacgc ttatcaacgt ggttgcctgg      5520
     tgtctaagat tcgcccacaa tgccagaaat tcagcccacc acatctcagg cccattaaag      5580
     gtcaaagaac gcggtgaagc cctgcgtgcc ctgattgttc gagctcagcg acattcattt      5640
     ttagaagaaa ttgaagatgc ccagtcctcc agacctaaat tacgcctggt cagaatttta      5700
     ggcttattca tacataccga cggagtattg cgagttggag gaagattaag acaagccaat      5760
     atccctgagt ccaataaaca cccggccctg ttgcctcagc aacatcccct tacggccctg      5820
     gtaattcaag acgctcacgt atccaatctc catgtaggcc ctaccgccac tcatgccttt      5880
     ctccgaaaca gatattggat cactaatgga aaaaatgtag ttcgacgtca attgtcatca      5940
     tgtaataaat gtttcagcat taaaccatcc cctttcaacc ccattatggg tcaactgcca      6000
     gagggaagag ccagcgcctc accacccttc acgactactg gtattgacta cgcaggcccc      6060
     ttcaacgtaa aaattgcgtc acttcggtcc gccaaggtcc tccaatgcta cctcgctatc      6120
     ttcatctgct tttcgacaaa ggccattcac ttagaattgg tcactgacct cacgactcag      6180
     gcctttctag ccgccttaaa ccgattcata gccaggcgag gcatgcctag tcacatatgg      6240
     tctgacaatg gtactaattt tgtcggcgct accaggagac ttaaggaagt atctgccttg      6300
     ttgaatgatt cccaatgtca agagtcgatc ctacgagagt ccggaagaag aggagtcgag      6360
     tggcacttca tcccaccaag agcaccccac ttcggtggtc tatgggaggc agcggtcaag      6420
     tccacgaaac gtttgctgaa agttaccttg ggcctgcaag agcccacaat ggagtgtctt      6480
     ctcaccatta tctgccaggt cgaggctatt ttaaattcac gacctctgac aaccctttcg      6540
     tcgtcgccag acgatctaca agtcttaacg ccaggacatt tcctaattat gcgtccaatg      6600
     actgctcttc cgactagtga ctccctgaac caacgcaccg ccctcaagtc taagtgggca      6660
     atggcccaat tcactgttag ccagttttgg aaacgatggc atcgggagta cctccttgat      6720
     cagcaggcaa tgatcaaatg gcattcgccc tctttcccag cggcagaagg acaaatagtc      6780
     acgattatgg acgacaacct ccctccactg caatggtcct taggccggat caccaaattg      6840
     cattatggcc gagatgacgt ggccagggtg gccgaggtga agacggcgtc cggagttatc      6900
     agccgccctg tcaggaagct gtgccctctc ccaaatcagt aagtggaact ctggcgagtc      6960
     cactgcgggg gagga                                                       6975
//
ID   BEL-1_RP-LTR repbase;    DNA;    INV; 686 BP.
XX
AC   ACPB02040023;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_RP_;
KW   BEL-1_RP-I; BEL-1_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-686
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02040023; Positions    6362    7047.
XX
SQ   Sequence 686 BP; 171 A; 113 C; 139 G; 263 T; 0 other;
     tgttggatcc tcgcaaggag atgcggcccc ccttgtggga aatttagaat gatgcagtgg        60
     agggttggct gcattggagg tctgtaggga gaaaggaact gcgtacgtga cctggctcag       120
     gcagttgtcc ttggacttca aaaaaagttg ttgggtcgtt tttcaatgtg tgttttgccg       180
     gtgtctctgt gcttagcatc agaaaagatt ttcgggcttc ttctggttag gtgtgaattt       240
     ttgtgccgtg atcagatcac tatagtaatc tattggatcc attggatgtt ttagttttta       300
     taattggtca tgaccattct agaaaataat gtaatgccta ctcatgtaag tctcaaactt       360
     tataatacgc catagactaa tgtgttccta tttcgtcaag aaatgttttt attattttga       420
     attctagctt taagatttcc cgtttgtcaa gaaatgtttt tattattttg aattctagct       480
     ttaagatttc ccgtttgtca agaaaggttt ttattatttt gaattctagc tttaagattt       540
     cccgattgtc aaaattaata aatatttgtt tctttataaa aggtattttg agtggtggtg       600
     tcccccacct agttccatcc cctatttaac tgttaattta aaatattatg tctaattgtc       660
     cttcctccct ctacgtcgac taatca                                            686
//
ID   BEL-1_SI-I  repbase;    DNA;    INV; 6291 BP.
XX
AC   AEAQ01000373;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_SI_;
KW   BEL-1_SI-LTR; BEL-1_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-6291
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01000373; Positions    3429    9719.
XX
CC   Positions [5147-5707] - Integrase core
CC   'TGCTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           935..5737
FT                 /product="BEL-1_SI-I_1p"
FT                 /translation="MSTSDIALLKRQRTTIKSSCTRIKTYVDGVTVATPAV
FT                 AAQLEERRLKLNEHWSQYNNFQSQIESLDATEGNDRIGFEEAYYTLCAKIR
FT                 ELLNPTLAVRAPPTSPSTSNASNHSENHISVRLPKLNLPSFSGKYDEWFPF
FT                 FDSFNSIIHSNASLSNVQKLQYLKSSVTGDASSVISSLEISDLNYNVAWTL
FT                 LRERYDNKRIIIHTHIKALMELPRIVKEDSTELRRIADGAVRHVQALKALR
FT                 CPTSHWDDLLVFILSSKLDPLTLREWQSSLVGTEPPTFMQFNEFISRHCQM
FT                 LEATNKSTAASKDATKRSQNNSKRQASCVATVKSKCHYCKGEHAIYYCQDF
FT                 LGLSARQRSTEARTRKLCTNCLRSSTHSADKCIARGCRTCGSKHNTLLHLS
FT                 TNASEERNSTTDGTKSPKPEGSTSKVVTHASSDNNKDFMLSTAVVNAIDDN
FT                 GAARPCRVLLDSGSQANFITREFAEVLGLPSHSLNASISAINNLTTNSTRA
FT                 VKVTFQSRLNSYSRTLDCVITEQIIGKLPALTMNRREFNLPRNIHLADPRF
FT                 NVSSRIDVLFGVEIFWELLCIGQIKATPDHPTLQKTRLGWILAGRHINVTS
FT                 PARTLQTFTTTISNAQLSEQLVRFWQIEDVGEVVINNKNDAYCEEHFLNNV
FT                 SQDSHGRYVVKMPVRDQLIHKIGNSRDIALKRLRGVERRFSRDATLREQYI
FT                 HFMNEYQMLGHMKEVEVGVDDNQPSFYLPHHCVFKKADQSSKIRVVFDASC
FT                 KSDTGVSLNDALRVGPVVQQDLMSIVIRFRTFSYVLIADIIKMYRQVLVHP
FT                 SQTSLQRILWRDDIESDIKTYELTTVTYGTASAPFLATRCLKHLADQHSSA
FT                 YPIGSTVIKRDFYVDDLLTGADTISEAKSVRNEVIQLLRLGAFELSKWASN
FT                 SPELLDSLNNQNEEPVIISDNVDTNILGINWHPKTDTLHFSYEPDQSHNAV
FT                 SKRTILSDISRLFDPLGLLGPTIVIAKLILQDLWRSNIGWDESIPQTIHTR
FT                 WFMFQSQLTELNQLTIPRCVKHGSNQGIQMHGFCDASQYAFGACVYFRTDL
FT                 GDGNHQCELVCSKSRVAPLKAISLPRLELSAALLLARLISKLKTAIDLTNI
FT                 KIYLWSDSTITLNWIASESRRYSVFVANRIGEIQRLTSNISWQHVPSGQNP
FT                 ADLLSRGLNPHELIQSTTWWNGPDFLQASEDHWPSVETSSHQDEPLELRKI
FT                 YAHVVTMNDNIVETLLNNHSNLDKACRILAYCLRFLRKIPRATTHFISHEE
FT                 IKSALHLMCRIVQQTTFPEEYKALERNQTVSASSKILSITPFRDKNGLIRV
FT                 GGRLRRSPLNHDACHPILLPKNHELTRKIIMQTHERNLHSGTQATIASVRQ
FT                 QFWPLSLRSVTRSIILKCIKCFKVKPVFSEALMGSLPTSRVTISKPFSHCG
FT                 VYYAGPLILREGKRRNARNHKAYVAMFVCFATKAVHVELVSDLTSDAFLAA
FT                 LKRFISRRGKPTQMYSDNGTAFVGAHNQLQEFFEFLSKADVQDDVKLFLRE
FT                 QQIAWNFIPPSAPHCGGLWEAAVRSAKTHLYRIVGKAHLTFEEMQTVLCEI
FT                 EAILNSRPISPLSEDPNGSHLSKPRTFLDWYCYE"
XX
SQ   Sequence 6291 BP; 1854 A; 1519 C; 1361 G; 1557 T; 0 other;
     tctttggtcc ttcgagccgg atacagcagt gatccgactc ttcaccggca tcacaacagc        60
     acggctacac accacgcgaa cgaggtatcc cgccatcaat acgcggagct cgttcgctgc       120
     agcagacatc tctcagtgca gaacgatttc aaggcggtac accgtgtaac gttcagtgcg       180
     cggactcagg cgaggggacg atcgacgaca gctcgatcgc gcgccaaaac agagaagaag       240
     tctcacctcg aggaaggtat cctgtgacca tcgcagagct tccagcatat caggagcgtt       300
     cagacgacag cgggacggca tcctacaatt cacataagca gacgtcggca ggcgataaga       360
     cgatcggcac agcacgatcg cgcgccgagg caagaaaggt attccgccat tactgcgcgg       420
     agcttccgtt gtcaagggga ttgcgccatc ttgggcgaaa tttctattgt cgaggacggt       480
     atcctgtgac catcgcagaa cgtccgacct acgagaaggc gtcccggaat ccagaggaca       540
     tctaacctta agctacatac acggtcgccg acaggcgaac gaacgaacgg catcaccagg       600
     aggcctcgcc agcatcacag tgttgcgatc gcagttcccg aggtgcgcac atgtgcagat       660
     aattccccga ggccacgacc aacggaggat cattcggaca gcagcgacac tgcgagcttt       720
     tctacaagca ccgccgcgta cagtcccggt aagggaaact tattacttgg cagtaccaat       780
     caattttcat ttgtcacaat taatttatta atatctgtca aatctcaatt tgccgcggac       840
     ggttggtcaa aactattttc gaatttattt gtcgcaaaca attaaagtta ttcgagtctc       900
     tgcgctgcga acatagcctt aaggtcaatt cacaatgtcc acttcggata tcgctttgtt       960
     aaaaaggcaa cgaacgacga tcaagagttc gtgtacacgg attaaaacat acgtcgacgg      1020
     agtcacggtt gccactccgg ccgttgcagc tcaactcgaa gagcgtaggt taaaattaaa      1080
     tgaacattgg tctcaataca ataattttca atctcaaatc gaatcgctcg acgcgactga      1140
     gggcaacgac cgaataggct ttgaggaagc atactatact ctctgtgcaa aaatacgcga      1200
     acttctaaat ccaacattag ctgttcgtgc gccaccgacg tcaccgtcta cgtcaaatgc      1260
     gtcaaatcat tcagaaaacc atatctctgt tcgactgcct aaattgaatc ttccttcatt      1320
     ctccgggaaa tatgatgaat ggtttccctt tttcgattcg tttaattcaa tcattcattc      1380
     aaacgcctct ttgagcaatg tgcaaaaatt gcagtattta aagtcgtccg taacaggcga      1440
     cgccagcagc gtaataagtt cattagagat ttctgactta aattataacg tagcctggac      1500
     tctcttaaga gaacgatacg ataacaaaag aattatcatt catacgcaca tcaaggcatt      1560
     aatggaatta ccacgtatag tgaaggagga ttcaaccgaa ctgcgtcgca ttgcggacgg      1620
     ggcagttcga catgtgcagg cgcttaaagc gctcagatgt cccacgtcac attgggatga      1680
     tttgctcgtg tttatcctaa gctcaaaatt agatccgctt accttgcgtg agtggcaatc      1740
     ttcgctggta ggcacggagc cccccacctt tatgcaattt aacgaattca tttctcgtca      1800
     ttgtcaaatg cttgaggcca caaacaaatc gaccgccgct tccaaggatg ctaccaagcg      1860
     ttctcaaaac aattcgaaac ggcaagcgtc gtgtgtggcc actgtcaaat caaaatgcca      1920
     ctattgcaag ggcgaacacg ccatatacta ttgtcaggat tttttaggac tttcagcaag      1980
     gcaaaggagt acggaagcac gtacacgcaa actttgcacc aattgcttgc gctcttcgac      2040
     gcattctgca gataagtgca tcgccagagg atgcagaacc tgcggcagca aacacaatac      2100
     gttgctccac ttgagcacaa acgcgtctga agaacggaat agcaccacag atggtacaaa      2160
     gagcccgaaa ccggaaggct cgacatcgaa ggtagtgaca catgcatcga gtgacaacaa      2220
     caaggatttc atgctatcca cagcagtggt caacgccatt gacgacaacg gagctgcacg      2280
     gccttgccgt gtattgctag attcaggctc acaggccaac tttatcacaa gggaattcgc      2340
     agaggttctt ggcctaccat cgcactcact aaacgcatcg atatctgcca tcaataatct      2400
     caccacgaat tctactcgag cagtcaaggt aacattccaa tctcgattaa attcctattc      2460
     caggacattg gattgtgtaa ttaccgagca aataataggt aaattgccag cattaacaat      2520
     gaatcgaaga gagtttaatt tacctcgcaa tatccattta gcagatccac ggttcaacgt      2580
     ttcttcgaga attgacgtac tgttcggagt agaaatcttc tgggagctac tctgcatagg      2640
     ccaaatcaag gctacaccag atcatccgac gctgcagaaa acaaggcttg gatggatttt      2700
     agcagggcgt cacatcaatg tgacttcacc cgcaagaact ttgcagacct tcaccacaac      2760
     catatcaaac gcgcaactga gcgagcaact agttcgattc tggcaaatcg aagatgttgg      2820
     tgaggtagtc attaacaata aaaatgatgc ctattgcgag gaacattttt taaacaacgt      2880
     gtcacaggac tcccatggta gatacgtcgt aaaaatgcca gtaagagatc agctgattca      2940
     caaaattgga aattcaagag acattgcctt gaaacggctg cgaggagtcg aacggcgttt      3000
     ttctcgagat gcaaccttaa gggagcaata cattcatttt atgaatgaat accagatgtt      3060
     gggacacatg aaggaagtcg aggttggcgt tgacgataat caaccatcct tctatttgcc      3120
     acatcattgc gtattcaaga aggctgatca gtcatcaaaa attcgcgtcg ttttcgacgc      3180
     ctcatgtaag agcgacacag gagtgtcatt aaatgatgcc ctgagagttg gaccagtggt      3240
     gcaacaggac ctgatgtcaa ttgtaatacg ctttcggact ttcagttatg tgctgattgc      3300
     cgacatcatc aagatgtatc gtcaagtact tgttcatcct tcccaaactt ctctacaaag      3360
     gatcctgtgg cgtgatgata tagaatccga catcaaaacc tacgaattaa ctaccgtcac      3420
     ttatggcaca gcatcagcac cattcctcgc aacaaggtgc cttaaacatt tagccgacca      3480
     gcactcttca gcttacccaa tcggctcaac agtcatcaaa cgagacttct atgtcgatga      3540
     cctccttacg ggggccgaca ctatttctga agccaaatct gttcgcaatg aggtaattca      3600
     attgttgaga ctgggcgcat ttgaattaag caaatgggct tccaatagcc cagaattatt      3660
     ggattcgcta aacaatcaga acgaggaacc agtaatcatc agtgacaatg tggacaccaa      3720
     tatccttggc attaattggc atcctaaaac ggatacattg cacttttcct acgagcctga      3780
     ccaatcacac aatgcggtgt ccaaacgtac aattctatca gacatttcaa ggttgtttga      3840
     tcctttggga cttctgggtc caacgatcgt tatcgccaaa ctaattttgc aagatctttg      3900
     gcgttcaaac atcggatggg acgaatccat accacagacc atccacacac gctggttcat      3960
     gtttcaatca cagttaaccg aactcaatca actgacaatt ccaagatgcg tcaagcatgg      4020
     aagcaatcaa ggcatacaaa tgcatggttt ctgtgacgcc agtcaatacg catttggagc      4080
     atgtgtgtat tttcgaaccg acctcggtga tggcaaccat caatgtgaac tggtgtgctc      4140
     aaaatcaaga gtagcaccgc ttaaagcaat ctctctacca aggttagaac tgtcggcagc      4200
     cttgttgcta gcacggttaa taagcaagct aaaaacggca atagatttga ctaacatcaa      4260
     gatatacctg tggtcagatt caaccatcac actaaattgg atagcttcag agtcacgaag      4320
     atactccgta tttgtcgcaa accgcatcgg tgagatacag cgactcacat ctaacataag      4380
     ttggcaacac gtgccatctg gccaaaatcc agccgatctg ttgtcaagag gattgaaccc      4440
     acacgaacta attcagtcaa ctacgtggtg gaatggacct gactttttac aagcttccga      4500
     ggaccattgg ccctctgtcg aaacttcatc tcaccaagat gaacctctag aacttcggaa      4560
     aatctatgca cacgtcgtca cgatgaatga caacatagta gaaaccctac tcaacaatca      4620
     ttcgaatctc gacaaggctt gtcgcatcct ggcgtactgt ctaagatttc tgcggaaaat      4680
     tccaagagcc accactcatt ttatttcaca cgaagaaatc aaatcagcac tgcacctaat      4740
     gtgtaggatt gtgcaacaaa ctacctttcc ggaggagtac aaagccttgg aaaggaatca      4800
     gactgtcagt gccagcagca agattctatc aattaccccg ttccgtgaca agaacggact      4860
     gatcagggtg ggaggcagac taaggcgttc gcctttaaat cacgatgcgt gccatccaat      4920
     tcttttgcca aagaatcatg agctaacgcg caaaatcatt atgcaaacac acgagcgtaa      4980
     tttacactcc ggcactcaag ccaccatagc aagcgttaga caacaattct ggcctttgtc      5040
     cctgcgatca gtaacgcgga gtataattct taaatgtatc aaatgtttca aggtcaaacc      5100
     agtattttca gaggccctca tgggctcctt gcctaccagt cgcgttacaa tttccaaacc      5160
     gttttctcac tgtggcgtgt actatgccgg tccattaata ctacgggagg gtaaacgtcg      5220
     caacgcgcgg aatcataagg cgtatgttgc catgttcgtg tgcttcgcca cgaaagcggt      5280
     gcacgtagaa ttagtaagtg acctaacgtc agacgcgttt ttagcagcgc tcaaaaggtt      5340
     tatatcgcga cggggcaaac cgactcaaat gtattccgac aacggcaccg cctttgtcgg      5400
     agctcacaat cagttgcaag agtttttcga attccttagc aaggccgatg tacaagatga      5460
     tgtcaaatta ttcttgcgag aacaacaaat tgcttggaat tttattcctc caagtgctcc      5520
     gcattgcgga ggactatggg aagctgcggt aaggtctgcg aaaacccatc tgtatcgaat      5580
     tgtcgggaaa gcgcatttaa cgttcgaaga aatgcaaaca gttctgtgcg agatagaagc      5640
     gatactgaat tcgcgaccta tatctccatt gagtgaggat cccaatggat ctcacttatc      5700
     taagccccgg acatttcttg attggtactg ctatgaatag tttccctaat cccgatctaa      5760
     ccgatgtaaa cgaaaaccga cttattcgct ggcaacgttt ggaacaatta aagcaacatt      5820
     tttggaaacg ttggaactta gaatatttac atacattgca gacacgttcc aaatggcgag      5880
     cgagtaaggg cgatcaattg aaaattgggc aacttgtact cattagacaa caagatttac      5940
     accctctcca ttggttgtta gggcgagtac aacaggtcta tccagatgac gaaggtgtta      6000
     ttagaagcgc cgaagttaaa acggccaagg gtatacttac gagaccgcta gtcaaattag      6060
     caatactacc catcgagtca acagacagta acgacctttt gtagcaccta tgcgtaacgt      6120
     attatataaa caactcaagt atttcattat catattcgtt tgtttttagt tttaagtaac      6180
     attttcataa ttagagacct atctgcgttt gcgtacaaga aattcctgat tgcgggtctc      6240
     gcattaattc ttccgtttat tgaaagccga gcctttcaag gggggcggcg t               6291
//
ID   BEL-1_SI-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   AEAQ01000373;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_SI_;
KW   BEL-1_SI-I; BEL-1_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-404
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01000373; Positions    3025    3428.
XX
SQ   Sequence 404 BP; 102 A; 99 C; 107 G; 96 T; 0 other;
     tgtagcgtaa acagttcgac acaatgttgt ctcgttaaaa ttcgtaacat tggtcttgca        60
     taggcgaatc cgtttcctat gcacgtgttt atatgtcgcc aagcaacgac gcgttcggct       120
     cattggcccg tcgcgaatgg gcgcgagccg tgtattactg cgcgcggaat agaaagagaa       180
     ggcgagacaa gacgccagat tcgtgtaagc cgtggccgag ctcacaagga aagcgagcga       240
     gtttttctgt gcgacctttg taccggtgaa gagtgattaa aatacatacg tacaaattga       300
     ggtgattacg catttacctc cctcacatcg ctcccgatcg caatctttcc ggtagcacgt       360
     gtggtaggcg gacgaagcac gctcacgcgt tatcgaacgc caca                        404
//
ID   BEL-1_SpEx-I repbase;    DNA;    INV; 5661 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5661
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6883-6883 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..5659
FT                 /product="BEL-1_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MVLTRSQSGDSRREQTQEEPSVTAGPGASSSAPESSS
FT                 VGVSGTGSGSTTTTNTDTTRTHGTLKPVETRSHRSTSSKKKRLAELEARER
FT                 LAEMKVKQAQAERELQEIQLQRIRTEAESSEDEDLEDDLASVRIGTWLARP
FT                 APPPGGETRPPPHDASDGKNGRDAATDTGGAATGARPLRDGDGYGESVCAK
FT                 SKGNLASEVLRGSDKVIDVGTLAAALAQVARSSREPPRYVQQLPIFDGKPG
FT                 EWIAYKAAYCDSHTYFSYVENVARIRMSLRGAAKEAVGCLLFSQSNPQVIL
FT                 DALERRFGRPEALIMTELENVKSLPKLNDNPRDICIFASRIANTVGTVEAL
FT                 NRNQYLHSPEMSRCIVEKLTPILKNKFYDYASSKKSEDIPVLKLLSMFMNE
FT                 EADKCGAYAQPERGNDESSDVRQRRRVERTFNVNKETPNDQCPACKQHGHK
FT                 LPDCSKYKQLDIDTRWDIAKNSNMCFRCLRNRHRRFTCKAPICDVKECNMK
FT                 HHKLLHKERKVEASHKVATPPAASPTPAVITHETVTSARENVSTTTPRNRR
FT                 AYLKIVPVTLSGPHTSVDTYALLDDGSTVTLLDASVADILGADGPASPMWI
FT                 QGIGTELKHEQSRTVSLHIRGKHHSEPQKIEARTVTRLEIMAQTVHDQDIN
FT                 NCRHLDDISSTLVYDHAKPMILIGQDNWHLLVVSETRTGARDQPVASYTKL
FT                 GWVLHGCQYSVNKVIETFCGHIKIEENPEPIEEAMRNFFKLESLGIEPKLP
FT                 RDDPQQRALDILEQKSRRLPNGSFETGLLWKQEEPKIPNNYLGALKRLENL
FT                 ERKLDKNENLKTQYLQRLENLFNSGYAEKAPDTCTPNKTWYLPHFPVVNPA
FT                 KPHKPPRLVHDAAAKTAGLCLNDLLLSGPDLLKSLPGVLMRFRQNKIAVSA
FT                 DIKEMFMRIKIREEDRDALRFLWRGDQRSGPPGEYRMTSVIFGATSSPCTA
FT                 LYIKDRNARDFTDKYPAAVSAIINNHYMDDYLQSFSSEEEAKLITTQVDYI
FT                 HKKANFVLCGWISNNKNVLNNNLASSQDIKVLGGDDTEKALGLRWDTEKDC
FT                 FIFRINKNKTPIVLLNNTRPPTKREALSIIMSVFDPLGIISPITIPAKRIL
FT                 QNTWKYKTEWDKPLPEDLLPKWKEWMKSLSTIETLLIPRCYDYGDVTARGI
FT                 HTFVDASEEAYAAAVYWRTERSDGSVQVTLAAAKSRVAPLKPISIPRLELQ
FT                 AALLGARLARTVVQEHDYEVNDLTYWSDSTTALAWIQAEPRSFKTFVAHRV
FT                 AEIEELTKKNEWRWLPSKDNVADDATRSTPEHFNSEHRWFRGPEFLRKSRK
FT                 EWPQNKKVIALTDTGEERVKCHVINNTTMNDHLPNITRFSKWTRLIRTTAR
FT                 LLQFIDLCKPSKHTVEYKCTKKKATKDPTWKRTHKNKLVKKFTQNMINNKT
FT                 VNYIPIPASYIQRAEEQWIKGSQAESFSKEIAAIKENKPTPGDSPLSVLST
FT                 YLDNAGVIRLRGRITAVQDVNEEIKNPIILEGKHRYTKLYIAYVHESLHHG
FT                 GTEITVNEIRQRLWITKLRPSVKNVIKGCLYCKIKKAKPANPSTGNLPYPR
FT                 LAHHARPFTFTGLDYFGPISVSVGRHKEKRYGALFTCLTCRAIHIEIANSL
FT                 SADSAIAALRRFIARRGSPKEIWSDNATCFKAADRELGESALSALGSESNA
FT                 RSISWKYIPPAAPFMGGAWERMVRAVKEALYVTLKEVHPSDETLATLLAEV
FT                 ENTVNSRPLTHVNVSPDEPEALTPNHILIGPNPHVPSPGNFTAADITARHQ
FT                 WRRAQALADVFWRRWVREYLPLLQNRREPYGSGTPPKVGDVVVICDSNLPR
FT                 NTWPKGRVTQVLPGADGEIRVVDVMTRGLVLRRPTKRIVVLPTESPEGDGG
FT                 R"
XX
SQ   Sequence 5661 BP; 1791 A; 1339 C; 1386 G; 1145 T; 0 other;
     caatctggtc cttcgaagcc gaataatcac tagcaagatg gtgttaacac gtagccaaag        60
     tggtgactca agaagagaac agacccaaga agagccctca gtgaccgccg gaccgggtgc       120
     cagcagctcg gcaccagaat cgagctcggt cggcgtgtca ggcacaggca gcggctctac       180
     gacgactacc aacaccgaca ccacgcgaac acatggtacg ctcaagcctg tcgaaaccag       240
     gtcacaccgt tccacatctt cgaaaaagaa gcgcctcgca gagctggagg ccagagaacg       300
     gctggctgaa atgaaagtca agcaagcgca ggcagagaga gagctgcagg aaatacagct       360
     gcagcgcatt agaaccgaag ctgagtcgag tgaagacgaa gacttggaag acgatcttgc       420
     ctccgtgagg attggaacgt ggctcgcgcg accggcgccg ccacccggag gtgagactcg       480
     gccgccgcca cacgacgcca gcgacgggaa gaacggcaga gacgcagcga cggacaccgg       540
     cggcgccgcg acgggcgctc ggccgctgcg agacggcgac ggctacggag aaagtgtgtg       600
     tgcgaaatca aagggcaatc tcgcgagtga agtgttgcgc ggtagtgata aagtgataga       660
     cgtagggaca ctggccgcgg ccctagcgca ggtcgcgcgc agctcaagag agcccccgag       720
     gtacgtccag cagctaccga tcttcgacgg aaaacccggt gagtggatag cttataaggc       780
     cgcgtattgt gactcacaca cgtatttttc atatgtagaa aatgttgcta ggattaggat       840
     gagcctcaga ggcgccgcaa aggaagctgt aggttgtcta ttgtttagtc aatctaaccc       900
     ccaggtcatt ctagacgcac tagaaagacg tttcggtaga cccgaggcct tgataatgac       960
     cgagttagaa aatgtaaaat cgttacctaa attaaatgat aaccctagag acatttgtat      1020
     ttttgctagc cgtattgcaa acacggtggg tacggtagaa gcactaaata gaaatcaata      1080
     tttacatagc cctgaaatgt cgcgttgtat cgttgagaag ttgacgccaa tattaaaaaa      1140
     caaattttat gattacgcgt ctagtaagaa aagtgaagat atacccgtat taaagctatt      1200
     atctatgttc atgaatgaag aagcagacaa gtgtggcgcg tatgctcagc cagaacgcgg      1260
     gaacgacgag tccagtgatg tacgacagcg gcgcagagtc gagcgcacgt tcaacgtaaa      1320
     taaggaaaca ccgaatgacc aatgcccggc atgcaagcaa cacggccaca aattacccga      1380
     ctgcagtaaa tataaacagc tagacattga tactcgatgg gatatagcta aaaactcgaa      1440
     catgtgtttt agatgcctac gaaacagaca tagaaggttt acgtgtaaag cgcctatttg      1500
     tgacgtaaag gaatgcaaca tgaaacatca caaactgttg cacaaagagc gtaaagttga      1560
     ggcgtcacac aaggtcgcga cgccgccggc ggcgtcgccg acgcctgctg ttatcacaca      1620
     cgaaaccgtc acgtcggcgc gggaaaatgt atcaacgact acgcctcgga atcgccgcgc      1680
     gtatttaaag atagtacctg tcacgttaag cggaccacat acaagtgtag acacatatgc      1740
     tttgttagac gatgggagta cagtcacctt gttagacgcg tcagtagcag atatcttagg      1800
     tgcagatggg ccggcgagcc ctatgtggat acaaggcata ggcacggaat taaagcatga      1860
     gcaaagccga acagtgagcc ttcacattcg cggtaagcac catagtgagc cacagaagat      1920
     agaggcgcgc accgtgacca ggctcgaaat tatggcgcaa acggtacatg accaggacat      1980
     aaataattgt aggcatttag acgacataag tagcactctt gtctatgatc acgcgaaacc      2040
     aatgatttta ataggtcaag ataactggca tttattagta gtctcagaaa cacggacagg      2100
     tgcgcgtgat cagccggtag catcgtacac aaaactcggc tgggtactgc atgggtgtca      2160
     gtactccgta aataaagtca ttgaaacatt ttgtggtcac attaaaattg aagaaaatcc      2220
     ggaaccaata gaagaagcta tgagaaactt ttttaaacta gagtcgctag gtatagaacc      2280
     taagttacct agagacgacc cgcaacagcg agccttagac atcctagaac agaagagtcg      2340
     acgattaccc aatggcagct tcgagaccgg actattgtgg aaacaagagg aacctaaaat      2400
     accaaacaac tacctaggtg ccctaaaacg cctagaaaat ctagaacgaa aactagataa      2460
     gaacgaaaac cttaagacac aatacttaca acgcctcgaa aatttattta attcaggtta      2520
     tgctgaaaag gcgcccgaca catgtacgcc gaataaaacc tggtacctac ctcatttccc      2580
     agtggtcaat ccagccaagc cacataagcc gccacgactg gtgcacgatg cagcagctaa      2640
     gacagcgggt ctgtgcctaa acgacctact gttatcggga cccgacttat taaaatcatt      2700
     gcccggtgtt ttaatgcgct tccggcaaaa taaaatagct gtgtcagccg acattaaaga      2760
     aatgtttatg aggataaaaa taagagaaga agatcgcgat gcgttgagat ttttatggcg      2820
     aggcgatcaa cgaagtggac cgccgggtga atatcgcatg acgtctgtta tatttggcgc      2880
     gacgtcatcc ccatgtacgg cactatatat aaaggatcga aacgcaagag actttactga      2940
     taaataccct gccgccgtgt cagcgataat aaataatcat tatatggacg attaccttca      3000
     gagtttttcc agcgaagagg aagccaagtt aataacaaca caagtagatt acattcataa      3060
     aaaagccaac tttgttttat gcggttggat atcaaacaac aaaaatgtgt tgaataataa      3120
     cctcgcgtct tcacaagaca ttaaagtgtt aggcggtgac gacaccgaga aagcactagg      3180
     actacgatgg gatactgaaa aagactgctt catattccga attaataaaa acaaaacgcc      3240
     tattgtatta ttaaacaaca cacgcccacc caccaaacgg gaggcgctca gtataattat      3300
     gtctgtattt gacccactag ggattatttc acctatcact ataccagcta aaaggatact      3360
     acaaaacacg tggaaataca aaacggagtg ggacaagccg ctccccgaag atctactacc      3420
     gaaatggaaa gagtggatga agtcactgag tactatagaa acgttgctga tcccacgctg      3480
     ctacgattac ggtgacgtta ccgctagggg tatacatact ttcgtagacg ctagcgagga      3540
     ggcatacgcc gcagcggtat actggcgaac agagaggtca gacggcagcg tacaagtgac      3600
     cctggcggca gctaagagca gggtagcccc actcaaaccc atttcaatac ctaggctgga      3660
     gctgcaagcc gcactgttgg gagcgcgcct agcccggaca gtcgtacaag aacacgacta      3720
     cgaggtcaac gacctcacat actggagcga ctctaccacc gctctagcct ggattcaagc      3780
     cgaaccacgc tcatttaaaa ctttcgtggc gcatcgtgtg gctgaaattg aggaactcac      3840
     taagaaaaat gaatggagat ggttaccctc gaaggataac gtggcagacg acgcgacacg      3900
     cagcacaccg gaacatttta actcggaaca cagatggttt cgcggccccg agttccttag      3960
     aaaaagtaga aaagaatggc cacaaaataa aaaggtcatt gccctcacgg acacgggcga      4020
     agaacgcgtc aaatgtcatg tgatcaacaa cacgacaatg aacgatcacc tccccaatat      4080
     tactcgattt tccaaatgga cacgactgat aagaacaact gcaagactac ttcagttcat      4140
     tgacctgtgt aaaccaagta aacatactgt cgaatataaa tgcactaaga aaaaggcaac      4200
     aaaagatcca acatggaaaa gaacacacaa aaataaactc gttaaaaaat ttacgcaaaa      4260
     tatgataaat aataaaactg taaactacat acctattcct gcttcatata tacaacgcgc      4320
     cgaggaacaa tggataaagg gatcgcaagc cgaaagcttc tcaaaagaaa ttgccgccat      4380
     taaggaaaac aaaccgacgc ccggcgacag tccgttatca gtactaagta catacctaga      4440
     caacgcaggc gttatacgtt tgcgcgggag aatcacagcg gtacaagacg taaatgaaga      4500
     aattaaaaac cctattatac tcgagggtaa gcacaggtat accaagctat acatagcata      4560
     cgtacatgaa agtttacatc atggcgggac cgagataaca gtaaatgaga taagacagcg      4620
     tctttggatt acaaaactac gtccgtcggt aaaaaatgta attaagggct gtttatattg      4680
     caaaataaaa aaggcgaagc ctgctaaccc gtctacgggt aacctaccgt acccccgttt      4740
     agctcatcat gcacgtcctt tcactttcac tggactagat tattttggac ccatatcggt      4800
     ttctgtaggt aggcataagg aaaaaagata cggagcttta tttacctgtt taacgtgtcg      4860
     agcaatacac atagaaatag ctaattcgct tagtgcagac tcagctatcg cagcccttag      4920
     gcgatttata gctaggagag gttctcccaa agagatatgg agcgacaacg ctacctgttt      4980
     caaagcggca gatagggagc taggtgaaag cgccttaagc gctttaggta gtgagtccaa      5040
     tgcgcggtcc ataagttgga agtacatacc tcccgcggca ccgtttatgg gaggagcgtg      5100
     ggaaagaatg gtgagggctg tcaaggaagc gctgtacgtc acactgaagg aagtccaccc      5160
     gtctgacgag accctggcca cgctactcgc agaagtggaa aacacggtga actccaggcc      5220
     actcacgcac gtcaacgtgt caccggatga gccagaagcc ctcacgccta atcatatttt      5280
     gatcggccct aacccacatg taccctcacc gggtaatttc actgcagcgg acattacagc      5340
     acggcaccaa tggcggcgcg cccaggcact tgcagacgtc ttttggcgaa gatgggtacg      5400
     tgagtacctg ccgctccttc aaaaccggcg ggagccctac ggtagtggta ccccacccaa      5460
     agttggagac gtcgtcgtga tctgcgactc taaccttcca cgcaacacct ggcctaaggg      5520
     aagggtgacg caggtgttgc caggcgcgga tggagaaata cgagttgtag acgtcatgac      5580
     cagaggactc gtactacgaa gaccaacgaa gcgcatcgtc gtgctcccca cggagtcgcc      5640
     tgaaggcgac ggcgggagaa g                                                5661
//
ID   BEL-1_SpEx-LTR repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-455
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6872-6872 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 455 BP; 131 A; 122 C; 92 G; 110 T; 0 other;
     tgtgcacgac agaatcatta cgtagccaga gcggcgcgcc accgcgccac ggaatcataa        60
     cacagacgta gcggcgccgc acgccgttac ttacctgtct ttgtttggtt taaacctgtt       120
     caaaacgact ataaacccgt tagtagtagg gcaacggagc cgcggagcca cgagcccaga       180
     caagtacaaa cacgttctcg cggctcggtc gctccacgca tcgccattgg ccaaaccacg       240
     ccccccgcat gtcagcgtct ataaaacgcc agaccatggc gatgcgcatc gtcagtcagt       300
     caaacagttt tgggtttaaa agtgtcacca ccttgttacg tataaaaaac tctaaaattt       360
     cttatgtttt gtgtaaaagt ttgtaaatta attaaaaatc cataatcaag ctatcgagtc       420
     tcaatttata atatttatac agtccattcg ccaca                                  455
//
ID   BEL-1_TCa-I repbase;    DNA;    INV; 5551 BP.
XX
AC   singleUn_1341;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_TCa_;
KW   BEL-1_TCa-LTR; BEL-1_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5551
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; singleUn_1341; Positions   10197    4647.
XX
CC   Positions [4485-5069] - Integrase core
CC   'GTAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3060..5423
FT                 /product="BEL-1_TCa-I_3p"
FT                 /translation="MWNSKCDSIQYGCSNFGHELTKPTKRSILSTISQIFD
FT                 PLGLLGPIIIKGKMFIQELFKQKLSWDEPVSGELKSKWFALFQGFMAVDEL
FT                 KIPRHVLLNNSVSVDIHGFSDASEKAYGACIYCRSTDQLGNVSVKLLCSKS
FT                 RVAPLKVLTIPRLELCGALLLARLINKAEESLQIIINKRYCWCDSKIVLSW
FT                 IHSDPSRWRIFVSNRVTQIQNLTNGHTWLYIETHNNPADVLSKGIEPKELQ
FT                 NYCLWWDGPSFLHDSSELWNNKSIACQTLTSEEQKCKVVVTVSVNDFDVFN
FT                 KFCSTFSCFKKLIKSFAWWTRFKNRLQKRPVKSSKTLDLEEYVAAETTLIR
FT                 LLQEQCFDKDLYDLKSGTLSSSSKIKSLHPFLDTNGVIRVGGRLGHSTYSF
FT                 SKKHPILLPNKHKLTDLIATDCHLKLLHVGPQGLLSALRETYWPIAGRNLA
FT                 RKVYRNCVTCFKANPQPLQHIMGELPSCRVKQTFPFYCVGIDYAGPFHLKD
FT                 RTTRNPKIVKAYVCLFVCMAVKAVHIEVVSDLTSEAFLACLKRFISRRGKP
FT                 KDIFSDNGLNFVGAANELRELYVFLKSESTQNKILEFLTSEKISWHFIPPR
FT                 APHMGGLWEAGIKSMKFHLTRIVGNASLTFEELNTIVTQVEAILNSRPLVP
FT                 LSSNPDDLSVLSPGHFIIGRAMVALPDYDYQEIPENKLSRFQRLQRIVQHF
FT                 WSRWTREYICELQNRSKWRNNSLNALKKGSLVIVRDDQTSPQQWRLGRVLD
FT                 LHPGHDGIVRVVTIKFATQIAKRPVAKLCVLPIGESV"
FT   CDS           join(211..1503,1507..2973)
FT                 /product="BEL-1_TCa-I_1p"
FT                 /translation="MPPKRNAQLEIFNLQSKAGSFESQLNHFENYIRSIDD
FT                 SNVNHQLIIQLELRISNIQSLYDKYETIYNELKNYDAATSITSLNDFGDSF
FT                 YNILAAAKSIISTFESNKQNLPQYLPQDANNSCGAFNGAYEEQVKLANLDL
FT                 PTFDGDYMQWAGFKDSFTTLIHNSKRIISKTNKFHYLKLSLKGAALKVIEN
FT                 MQANDSNYDIAWDLLHQRFDNKQLIVKSHLDAIFELPTVNKDSCQSLRELH
FT                 DNLNKNLRALKNLGQPVEYWDTIIIHIILNKLDSNSKRAFAEFKRQCEFPT
FT                 LDDLNNFIKDRCIVLEQLSFKTKAEQPAQINKPKRTPPYQNHYAYASTTNN
FT                 DNTNSGKSCPLCKADHFLHSCDEFYKMTVIERFNFVSDTKLCKNCFNSGHR
FT                 TSQCKSARVCKHCRKKHHSSIHFEKTEPQNNTVAAVSKSSSQILLATIVVN
FT                 IKDVKGITHKVRCLMDGGSQSNFITSKLCKKLGLVTTPINYTVLGINSYPS
FT                 NINKQVKICISSSMTKFECNLHCLVIQKITEKLPIISFDKNILNLPPDVVL
FT                 ADPNFNVSSEIDLLMGASLAFQILRGEPISLGNDNLPIIHNTQFGWVVAGN
FT                 LITEAISQNTSFSFCNTNMSDNVSNEDLQRNLSQFWEIEEDVKLLSSLSKE
FT                 NQLCETFFSETVSREPSGKFIVKMPLKDNHVFLGDSEQMALRRFYSLEQKL
FT                 AKNPQLKTQYSQFINEYKEMNHMSLVSKQFSDLEPGYYVPHHAVYKAESLT
FT                 TKLRVVFDASAKTDSGLSLNDVQMAGPNLQNDLSSILLRFRKHAVVLTADV
FT                 MKMYRMIHIHPEQRKFLRIFWRDNSNEQLQLYELNTVTYGTASAPYLAIKC
FT                 LNVLADENKETFPKTCEIIKGDFYVDDVLTGADAVEEVLQIQNELSTLFWA
FT                 KQVSYLENTYLTTTQF"
XX
SQ   Sequence 5551 BP; 1804 A; 993 C; 1019 G; 1735 T; 0 other;
     ttttggtcct tcgtacccag gattcgttct catatcacaa cgcaacttcc caaggttagc        60
     cattgcgtcg cccgaccaga cacaacaagc acaggtcagc acattccatt ttccattatg       120
     atttccttta ttctaagatt tccaagtatt gttttaaacc ttttatacca ttcattttaa       180
     ttgcttgaat acatgttgta aacttacata atgcctccga aaagaaatgc tcaattggaa       240
     attttcaatt tgcaaagtaa ggccggatct tttgaaagcc aactaaatca tttcgaaaat       300
     tatattcgtt caatcgatga ttcaaatgtg aatcatcagt taattataca acttgagctg       360
     cgtatttcta acattcagtc attatacgat aaatatgaaa cgatatataa cgaattaaaa       420
     aactatgacg cagcaacctc tatcacgtct ttaaatgatt ttggagacag tttttataac       480
     attttagcag cagctaagag cattatctcg acatttgagt caaataaaca aaatttacct       540
     caatatttac ctcaagatgc aaacaactct tgtggggctt ttaatggcgc ttacgaagag       600
     caagtcaaat tagctaattt agatttgccc acctttgatg gcgattacat gcaatgggca       660
     ggattcaagg actcatttac gaccttgatc cacaacagta aacgaataat ttcaaaaacg       720
     aataaatttc attacttaaa gttaagccta aaaggtgctg ccttgaaggt catcgaaaat       780
     atgcaagcaa acgactcaaa ttatgatatc gcatgggact tgttgcatca acgctttgat       840
     aataagcaat taatcgttaa aagtcatttg gacgcgattt ttgaattacc gacagttaat       900
     aaagactcat gccagtctct acgggaactg catgataatt taaacaaaaa tcttagagct       960
     ctcaaaaatt tgggccaacc cgtagaatac tgggatacta taattataca cataattctc      1020
     aataaactgg attcaaattc taaacgcgct tttgcagaat ttaaaagaca gtgcgaattt      1080
     ccgacattgg acgatttaaa taactttatc aaagatcgtt gtattgtttt agaacaactg      1140
     agttttaaga ctaaggcaga acaacctgct caaattaaca aaccaaaacg aactccacca      1200
     tatcaaaacc attatgcata tgctagtacg acaaataacg acaataccaa ttctggcaaa      1260
     tcatgtcctt tatgtaaggc tgatcatttt ctgcattcat gcgacgaatt ttacaaaatg      1320
     actgtaatcg agcgtttcaa ctttgtaagt gacacaaaat tgtgtaaaaa ttgttttaac      1380
     tcaggtcatc gcacatctca atgcaaatct gcgagagtat gtaagcactg ccgcaaaaaa      1440
     catcattcgt caattcattt tgagaaaaca gaaccacaaa ataacactgt ggccgcggtt      1500
     tcttaaaaat cgtcttctca gattcttttg gcaactattg tagtaaacat aaaagacgtc      1560
     aaaggaatca ctcataaagt tcgttgcctg atggacggag gctcacaaag taattttatt      1620
     acatcaaaat tatgcaaaaa attaggactt gtaactacac ctattaatta cactgtgttg      1680
     ggcataaact cttatccatc gaacattaat aagcaagtca aaatctgtat ttcatcctca      1740
     atgactaaat ttgaatgcaa cttacattgc ttggttattc aaaaaattac ggaaaaatta      1800
     ccaatcatat catttgataa aaatatttta aatctacccc ctgatgtagt tttggcagat      1860
     ccaaatttca atgtttctag cgaaatcgat cttttaatgg gtgcgtcact agcttttcag      1920
     atcttacgtg gtgaacccat atcattgggt aatgataatt tgcctattat tcataatact      1980
     caatttggtt gggtggtagc aggaaattta atcacagaag ctatatcaca aaatacgtct      2040
     ttctcttttt gtaacacgaa tatgtctgat aatgtctcaa acgaagacct tcaaagaaat      2100
     ttgagccaat tttgggaaat cgaagaagat gtaaaactac tttcttctct ttctaaagaa      2160
     aatcagttat gcgaaacatt cttttctgaa acagtatcac gcgaaccttc cgggaaattt      2220
     attgttaaaa tgcctctgaa agataaccat gttttcttgg gtgattcaga acaaatggca      2280
     cttcgacgat tttacagtct ggagcaaaag ttagccaaaa atcctcaatt gaaaacacaa      2340
     tattcgcagt ttatcaatga gtataaagaa atgaatcata tgtctttggt ttcaaagcaa      2400
     ttttcggact tagaaccagg ttattacgtg ccacatcatg ctgtttataa agctgaaagt      2460
     cttacaacta aattgcgtgt tgttttcgac gcatcagcta aaactgattc gggcctatcg      2520
     ttaaatgatg tgcaaatggc cggtcctaat ttacagaatg atctttcttc tattttattg      2580
     agatttagaa aacacgctgt tgtcctaacg gcagacgtga tgaaaatgta tcgaatgatt      2640
     catatccatc ccgaacaaag aaagtttttg cgtatatttt ggcgagacaa ttcaaacgaa      2700
     caacttcagt tatacgaact taacacggta acgtatggta ctgcgagcgc accgtattta      2760
     gctattaaat gtctaaatgt gctagcagat gaaaataaag aaacgtttcc aaaaacgtgc      2820
     gagattatta aaggtgactt ttatgttgat gacgtcctga cgggagcaga cgcggttgaa      2880
     gaagttttac aaatccaaaa tgaactatca actctatttt gggccaagca ggtttcgtac      2940
     ttagaaaata cctatctaac aacgacacag ttttgaataa tattgaatca cacacagcgg      3000
     acgttaaata caacatacta catgtaggcg ccgaagagaa aacaaaaact ttgggtataa      3060
     tgtggaattc gaaatgtgac tcaattcagt acggttgcag taattttgga catgaattaa      3120
     caaagcctac caaaagaagc attctttcaa caatatctca aatatttgac ccattaggtt      3180
     tgctgggacc tattattatt aagggaaaaa tgtttattca agagctattt aaacaaaaac      3240
     tctcatggga tgagcctgtt tcgggtgaac tcaaatcaaa gtggttcgct ttgtttcaag      3300
     gttttatggc tgttgacgaa ttaaaaatac ctcggcatgt tcttttaaat aatagtgttt      3360
     cagttgacat tcatggattt tctgatgctt cagaaaaggc ttacggtgca tgtatttatt      3420
     gtcgatcaac tgaccaactg ggaaacgtgt cggttaaact attgtgttca aaaagtcgcg      3480
     tggcaccatt aaaagtacta actatacctc gtttagaatt gtgtggggca ttattactgg      3540
     ctcgacttat taataaggca gaagaatcac tacaaataat tatcaacaaa cggtattgtt      3600
     ggtgcgattc aaaaatagtt ctctcttgga tacattcgga tccgagtcgc tggagaattt      3660
     ttgtgtctaa cagagtaaca caaattcaaa atcttaccaa tggacatact tggctataca      3720
     ttgagacaca caataatccc gcagatgttc tgtccaaggg gatcgagccc aaagaattac      3780
     aaaattattg tttgtggtgg gacggtccat cttttcttca tgactcatct gagctttgga      3840
     acaataaatc aattgcctgt cagactctaa cttcggaaga acagaaatgc aaggtcgttg      3900
     tcacagtttc ggttaacgat tttgatgtat ttaataaatt ttgttcaaca ttttcatgtt      3960
     tcaaaaaact aattaaatca tttgcgtggt ggacaagatt taaaaatcgt ctgcagaaaa      4020
     ggcctgttaa gtcttcaaaa acattagact tggaagaata tgttgctgca gaaactactt      4080
     tgatacgtct gttgcaagag caatgttttg ataaggattt atatgattta aaatctggaa      4140
     ctttgtcgtc tagcagtaaa attaaaagct tgcatccatt tttagacacc aatggtgtaa      4200
     taagggttgg tggcagattg ggccattcaa catattcatt ttctaaaaaa catcccattt      4260
     tacttccgaa taaacataaa ttaacggatt taattgccac tgattgtcat ctgaaacttc      4320
     tacatgttgg gcctcaaggt ttattaagtg ccttgcggga aacttattgg ccaattgctg      4380
     gtagaaattt ggctagaaag gtttatcgga actgtgtcac ttgttttaaa gctaatcctc      4440
     agcctttaca acatataatg ggtgaattgc ctagttgtag agtcaaacaa acgtttccgt      4500
     tttattgtgt aggaatagat tacgctggtc cgtttcactt gaaagatagg acaactagaa      4560
     atccaaaaat tgttaaagca tatgtttgcc tatttgtctg tatggctgtc aaagcagtac      4620
     atatcgaagt tgttagtgat ttaactagcg aggcctttct tgcatgttta aaacgcttca      4680
     tctcgcggag aggtaaacct aaagatattt tcagtgacaa tgggttaaat ttcgtgggtg      4740
     ccgccaatga gttgcgggag ttgtatgtat ttttaaagtc agaatcgact caaaacaaaa      4800
     ttttggaatt tttgacatca gaaaaaatta gttggcattt catacctcct agagcccctc      4860
     atatgggagg tctttgggag gcaggaatta aatctatgaa gtttcactta acgagaattg      4920
     ttgggaatgc cagtcttact ttcgaagaat tgaacactat agtcactcaa gtagaggcaa      4980
     tacttaattc acgacccctt gttcctttat cctcaaatcc tgatgaccta tcagtgctgt      5040
     caccgggtca ttttatcatt ggacgagcaa tggtggcatt accagactat gactaccaag      5100
     aaataccgga aaataaatta tcacgatttc aacgacttca gcgaatcgta caacacttct      5160
     ggtcccgttg gacccgtgaa tatatatgtg agctgcaaaa ccgaagcaag tggaggaaca      5220
     attcactcaa tgcactgaag aaaggctcct tggttatagt gcgggacgac cagacctctc      5280
     cgcagcaatg gagactaggc agggtgttgg atctacatcc aggacatgat ggtattgtgc      5340
     gggtggtgac gattaaattt gcaacgcaaa ttgcaaaaag gcctgttgct aagttgtgtg      5400
     tcttaccgat tggtgagagt gtttgattga cgatttctcc gttttatatt ttattttttt      5460
     ttgtatttta tttttttttt gtttttattt tatgtaattt tgttatttgt gttatgttgt      5520
     attgaaagca tgcttgcaat ggggggcggc a                                     5551
//
ID   BEL-1_TCa-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   singleUn_1341;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_TCa_;
KW   BEL-1_TCa-I; BEL-1_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; singleUn_1341; Positions    4646    4444.
XX
SQ   Sequence 203 BP; 65 A; 40 C; 41 G; 57 T; 0 other;
     tgtcgggtat tctcggttat tcccgagtgg aaccgaaatt aaaaataaag ccgtcttaag        60
     tcagaacgct acgatcagta tgacgaagtt gttgttttat ttattttaac ctacaattga       120
     accagcttcc aattttcgaa gaaataaggg cagattgcaa acaggaagca tctacacctg       180
     agcaatcgcc tgaggtttca aca                                               203
//
ID   BEL-1_TrNi-I repbase;    DNA;    INV; 6455 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6455
RA   Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1016-1016 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1102..6300
FT                 /product="BEL-1_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPLLGKPTRRGTLKKSKCNEVEYSTQDLPSLRRKRTI
FT                 SYNRLNKALEIGILAENDSSQLNLFLSYFQDIKQHAASFEDAHFTIQEILD
FT                 DPENEDNDLQERFDAMYYRLLSIHRTLSKTESTRSCDTVSSNIRLPKIVLP
FT                 NFSGDIKKWPEYYDTFNTLIHNSTSLTDTEKLHYLVSSLSGDALLVIKPFP
FT                 LTHEHYRDAYEALTARYKNKRDLAFTCWRDILKIEFKVSDAHAFRRSLDLF
FT                 DENLSILRTINLPVNHWDFILVYHILSKVDQRLRRDFEEKHSDVELPTYNQ
FT                 LRNFLQSKCEALLRDTHFVESDKPQPRSKSAHPQPQPRSSASHTLVAAKSA
FT                 TTQQLNEGVPTNVPYTKKCTFCSDFHSIAACPEFLKKSFDERLQIATEKHW
FT                 CFNCLNPSHQLKDCKSIFSCRICKRNHHTLLHRDKSSESNQSSSTLVSRSL
FT                 THTTVLLATAMIQVRDAFGSMQSFRALFDTGSQSNFITEKAVKRLSLPLSP
FT                 TNDNVSGIGDASAPILGDITCLIGTKDKILFKLNLHVISTICGDQPIAKLN
FT                 TSGWTHIESKPLADPGFDLPGPIDILLGAEVFADSLLNQHIKGNANQPIAL
FT                 NSVFGWLLLGKTRLASNTLVHASGKNDIDLNSLVQRFWELDCVPKASLLTP
FT                 EEVFCEQKFLSDHCRDTFGRYTVRLPFKDDSEPKFEGSRDVALRRFHAIER
FT                 RLSRDPDLQKEYANFMTDYLDAGHMSLVPGNELSQGKYYIPHHCVLRPDSA
FT                 TTRLRVVFDASAKDAHSRSLNDTQLIGPKLQPNILEILLRFRVHNIVFMAD
FT                 VRQMYRQILISQADRDYQRIFWRTTPTECLQEYRLNTVTYGVSSSPFLACR
FT                 TLRQLAEDEGNQYPIAKGIILSDVYIDDVASGSDTLEHAQQAKDQLIALFK
FT                 LGGFHLRKWVSNNAQLLLDLPIQDRLTGSVSLDNYETQILKILGLKWDPHT
FT                 DAFLFEIQPLDRPCTKRSILSELARVFDPLGFLSPITIQIKTYIQKLWILG
FT                 IGWDQTPPDEVIGMWNTYKVQLSQLSQVRIPRRLICSDVKSFELHGFCDSS
FT                 EVAYGAVIYFRVTNGSGKVTTYLVCSKARVTPLKRISLPRLELCAAVLLSE
FT                 LYKFVRDTYLDRITINDVYLWSDSTVVLSWLRAHSSRWVTFVANRVSQIQD
FT                 LTATACWRHVPSGDNPADVCSRGQLPSEIVNNSLWWAGPDWLRRDHCSWPS
FT                 IPDTASHEDEVLVKSEERKCVVLLTDQLDKTLPDGSIIEMLLNRFSSLSKL
FT                 VNVLTYVYRFIDNTRHPNQVNRKRFLNNVERHHTLIKIVKHVQHTTFLEEI
FT                 FHLQSKKPLSKPFRKLNPFLDDQGVLRVGGRISRSGLEYEQKHPAFLPSNH
FT                 PFTYLVIDFIHRSYLHPGINTTHFLLLQQFWIIAAKRVIRRHLSKCIQCFR
FT                 TNPQPLQPFMSDLPSYRVNQVKPFSVVGVDLGGPFRIKLGSHRGAKMDKAY
FT                 LCLFVCLATKAVHLEVVSTLTTEGFIAALRRFVGRRGRCNVIHADCGTNFV
FT                 GAKNQLSILMEQATNTEKIEFKFNPPGAPHFGGVWEIQIKAAKSHLLRVVG
FT                 DQVLTFEELTTLFVQIEAILNSRPLCPISSDPNDLTCLTPGHFLTLEPLTA
FT                 VPDEDLSNVNLNRLHRWQLLQSFQQSFWSRWKSEYLNSLTQRAKWTKHSKP
FT                 LQIGSMVIIKDDNRAPLHWTLARVVNLQVGADGIARSALVQNADKQIINRP
FT                 LVKLCPLPIEDSA"
XX
SQ   Sequence 6455 BP; 1805 A; 1459 C; 1244 G; 1947 T; 0 other;
     tctttttggt gccgaaaccc gggagcttcc atttaattct tatcgaatcg ccatattggt        60
     tttctggtta aaggtaactt aaaataatct caatcgatct attgttttaa ccatatcgca       120
     ttttaagttg tcccatcgga actatcaaac cattccataa tttcgtaatt attcataact       180
     aaacacgtca cgtaaacgag ctaagtaggt acttatccta aattcgccat cgaacaaaaa       240
     actataacaa taaaacttcc gattagcttg tgagggtacc tatgccgatc taactacaaa       300
     taccgtcctg catgggtatt ctcgcttgtt acttaacaat tattgtggtg aagtcaaatt       360
     gtgcaatcac ttttatcaat ttatcggtgc acactttaac aacccgcaat aagtaactca       420
     tcggctcatt aaaatgcaag tgacctacca aaacaaataa cgtaatacta agtggattat       480
     ccgtttttta ttaaagtggt tttcgtagta acattttgtt cattaaatac tttcattcgt       540
     aaaaaacgta cgtcgtttaa acgtacctac gagtattatt attcactgta ggtaggtaga       600
     ttgaaatatc gtaaaccgtt ctatcaaaat aacgtatcag ttacctaggt acctacaaat       660
     aaaacttctc gacgagtcgg tgattaaatt taccgtttat tttcacgaat tgaacacaga       720
     ggtaatcagc tgttgcagta cattgtgtct atagttctat acagtcatca atcgaccctg       780
     tcatattatc tgtgtatgct tataatataa tatccgagta gctagatttg ctagttggta       840
     acaataggga tacctacacc gtacacgcgt cttgtaacgt acctattata cgcgccgaag       900
     ttcggggcgc gtttgggtag gatacactgt cttagcgacc actacctact tattgcggat       960
     gatacttgca cataagtagg tacatttatt tagtgcttaa ttataatccg taagcttaac      1020
     tctgtatcga aattcttcgc acattacaag aaataatatc tcatagcttt gttttgtacc      1080
     tgcttaataa acttttttta aatgccgctt ctcggaaaac ctacccgcag gggtacatta      1140
     aagaaatcaa aatgtaatga agtagaatat tcgactcaag atttaccgtc tttgcgtagg      1200
     aaacgaacca tttcttataa ccgtttaaat aaagcgctgg agataggtat tttagccgaa      1260
     aacgattctt ctcaactaaa tttgtttttg tcatattttc aagacattaa gcaacatgcc      1320
     gctagttttg aggatgcgca ttttacgatc caggagattc tcgatgaccc tgaaaatgag      1380
     gacaatgacc ttcaagaaag gtttgatgca atgtattaca gattgttgtc aatccatcga      1440
     acgttatcta aaactgaatc aactcggtct tgcgacactg tttcgtcgaa tattcgatta      1500
     ccgaaaatcg tgcttcctaa ctttagcggc gacattaaaa aatggcctga gtattatgat      1560
     acgtttaaca ccttaataca taactcaaca tcgttaaccg acactgagaa gcttcattat      1620
     ctcgtatcgt ctctgagcgg cgatgcgctg cttgttatca agcctttccc tctgacacac      1680
     gaacactacc gcgacgcata cgaagcactc accgcgcgct ataagaataa gcgggatctt      1740
     gcgtttacgt gttggcggga tattttgaaa attgaattta aggtttctga cgcgcacgca      1800
     tttcgaaggt cactcgattt attcgatgaa aacttaagca ttttaaggac tattaatttg      1860
     ccggttaacc attgggattt cattttagtg tatcatatct tatcgaaggt cgaccagagg      1920
     cttcgtcggg attttgagga aaaacattcc gatgtagaac ttcctactta taaccaattg      1980
     cgaaatttcc tgcaatccaa gtgtgaggct ttattgcgag acacacattt cgttgaatcg      2040
     gacaaacctc aaccgaggtc taaatctgct cacccgcagc cccaaccgcg cagttctgcg      2100
     tcacacacac tcgttgccgc taagtccgct actacacaac aactgaatga aggggtacca      2160
     acgaatgtcc catacacaaa aaaatgcacg ttttgttcag atttccattc cattgccgca      2220
     tgtcccgagt ttcttaaaaa atcgtttgat gaacgtttgc agatcgctac tgagaaacac      2280
     tggtgcttta actgtttgaa tccatctcat cagttaaaag attgtaaatc tatattttcg      2340
     tgtcgcatat gcaagagaaa ccaccacacc ttactccatc gcgataagtc tagtgagtca      2400
     aatcagtctt catcgacatt agtgtcaagg tcgttaacac acaccactgt tctactggcc      2460
     acagcaatga ttcaggtccg tgatgccttt ggctcaatgc aatcgttccg agctcttttt      2520
     gatactggaa gtcaaagcaa ttttatcacg gaaaaggcag tgaaacgtct aagcttacca      2580
     cttagtccaa ctaacgacaa cgtcagcggt atcggagatg cttcagcgcc gattcttggt      2640
     gacatcacgt gtttgatagg cacaaaggat aaaatcttat ttaaattgaa cttgcacgtc      2700
     atatcaacaa tatgtggcga tcaaccgata gcaaaactta atacatctgg gtggacccac      2760
     attgaatcga aacccttagc agatcctggt tttgatctcc cgggacctat cgacatattg      2820
     ctcggcgcgg aggtgtttgc tgactcgctt ctaaatcaac atatcaaagg caatgcaaat      2880
     caaccgatag ctcttaactc tgttttcggt tggcttcttt tgggcaaaac tcgtctagct      2940
     tcaaacacct tagtgcacgc atcgggaaaa aacgacatcg acttgaattc gttagttcaa      3000
     cgtttctggg agttagactg cgtacccaag gcgtctcttc tgactccaga ggaggtgttt      3060
     tgcgaacaaa agttcttatc cgaccattgc cgcgatacgt ttggacgata cacagtacgc      3120
     ttaccattca aagatgatag cgaaccgaag tttgaaggtt ctcgtgacgt tgcacttaga      3180
     cgatttcatg caatagaacg taggctgtct cgtgaccctg acttacaaaa ggaatacgcg      3240
     aattttatga cagattactt ggacgccggt catatgtctt tggttcccgg gaatgaactc      3300
     agtcagggga aatattatat tccacatcat tgcgttttgc gtcctgactc tgctaccacc      3360
     cgtctccgcg ttgtctttga cgcgtcggcc aaggatgccc actctcggtc tttaaacgac      3420
     actcaactaa tcggtcccaa gttacaaccg aacattctag aaattctatt gcgatttagg      3480
     gtacataata ttgtttttat ggctgacgtt cgacaaatgt accgtcaaat tcttatttcc      3540
     caagccgatc gtgactacca gcgcattttt tggagaacca ctcctacaga atgtcttcaa      3600
     gaataccgtt tgaatactgt aacatatggc gtttcatctt caccctttct tgcgtgtcgt      3660
     actctgcgac agcttgccga ggacgagggc aatcagtatc ccatagcaaa gggaatcatt      3720
     ctgtctgacg tatatatcga cgacgtggcc agtggttccg acacgctaga acacgcccaa      3780
     caggcaaagg accaactaat cgccttgttc aaattaggtg gcttccatct taggaagtgg      3840
     gtgtctaaca atgcgcaact tctgcttgac ctccctattc aagatcgtct cactggttct      3900
     gtctctctcg ataactatga aactcaaatt ttaaaaattc tcggcctaaa atgggatcct      3960
     cacacagatg catttctttt cgaaatccaa cctctcgacc ggccttgtac caaacgatcg      4020
     attctcagcg aactagctag agtgttcgac cctctaggat ttttgtctcc cattacaatt      4080
     caaatcaaaa cctatatcca gaaactttgg atccttggta tcggatggga tcaaacaccg      4140
     cctgatgagg tcattggtat gtggaatact tacaaggttc aattatcaca gttatctcaa      4200
     gttcgaattc ctcgcaggtt aatttgttct gatgtcaaat cgttcgagct tcacgggttt      4260
     tgtgacagtt ccgaggtagc gtatggtgcg gtaatatatt ttcgggttac taacggcagc      4320
     ggcaaggtca caacgtatct ggtctgttct aaggctcgtg taacacctct taaacgaatt      4380
     tcattgcctc gtctggagct ctgcgccgca gttcttctat cagaacttta taaatttgtt      4440
     cgtgacactt accttgatcg cattacgatt aacgatgtct atctgtggtc agactcgacg      4500
     gtagttcttt catggttgcg agcccattct tcccgctggg taacattcgt cgccaacaga      4560
     gtcagtcaaa tccaagatct tactgcaact gcgtgctggc gccatgtacc ttcaggagat      4620
     aaccctgcgg acgtttgctc tcgtggtcaa ttacccagtg agatcgtaaa caactcctta      4680
     tggtgggcgg gccctgattg gctacgtagg gatcactgtt cctggccttc tatccctgat      4740
     actgcctctc acgaggatga agtactcgtt aaatccgaag aacgcaagtg tgtagtctta      4800
     ttaaccgatc aacttgataa aaccttacct gacggatcca tcatcgagat gttattaaat      4860
     cgtttctctt cattgtctaa gttggtaaat gttctcacgt acgtatatcg ctttatcgat      4920
     aatactcgac atcccaatca ggtgaatcga aaacgatttc ttaataacgt tgaacgtcat      4980
     cacactctta taaaaatagt taaacatgta caacatacca cttttctcga agaaatcttt      5040
     catctgcaat caaaaaaacc cttatcaaaa ccttttcgca agttaaatcc gttccttgat      5100
     gatcagggag tactcagggt gggcggtagg atttcgcgat caggtctcga atatgagcaa      5160
     aagcaccccg ccttcttacc ttctaaccat ccttttactt acttggtcat cgactttatt      5220
     catcgcagtt atttacaccc aggtattaac actacacatt ttctactact tcaacaattc      5280
     tggatcatag ctgcaaaacg cgttattcgt cgccacttgt ccaagtgtat tcaatgtttt      5340
     cgaacaaatc ctcagccatt acaacctttt atgagcgatc ttccctctta tcgcgtcaat      5400
     caagttaaac cattttccgt ggtcggtgtc gatctaggcg ggccgttccg tattaaactc      5460
     ggttcacata gaggcgcgaa aatggataag gcgtatttgt gcttgtttgt ttgcctggcg      5520
     accaaggcgg tgcatttaga agtcgtatcg acgttaacaa ctgaagggtt tattgctgct      5580
     ttgcgccgat ttgtaggaag acgcggtcgg tgcaacgtaa ttcacgcgga ttgtggcact      5640
     aattttgttg gtgcaaaaaa ccagctctca attttaatgg aacaggcaac gaatacagaa      5700
     aaaatcgaat ttaagttcaa ccctcccggc gcaccgcact ttggcggcgt ctgggagatt      5760
     cagattaaag ccgcaaaatc tcatttgctt cgggttgtgg gtgatcaggt tttgactttt      5820
     gaggaactaa ccactctttt tgttcaaata gaagccatct taaactcaag gccactttgc      5880
     cctattagtt ccgatccaaa cgacctgacg tgtctcactc cgggtcattt tcttacttta      5940
     gaacctttga cagccgttcc cgatgaagat ctttctaacg taaacctaaa tcggcttcac      6000
     cgatggcagc tgctccaatc ttttcaacag agtttttggt ccagatggaa atcagaatac      6060
     ttaaattctt taacgcaacg agccaaatgg acgaaacact ctaaaccgtt acagataggt      6120
     tctatggtaa tcattaagga cgataatcgt gcaccattgc attggacact tgcacgagtt      6180
     gtaaacctcc aggtgggtgc tgatgggata gctcggagtg cattggttca aaatgctgac      6240
     aaacaaatta taaatcgacc tttagttaaa ctgtgtccct tgcctataga ggactctgct      6300
     tagctgttct aatcatatta accgaacttt caacccttat ccaaaacttt atttaattct      6360
     ttatttaatt ctctttagtt ttagtattca acctttcgtc aactaatttt ttgtctttta      6420
     accagaaaat accataggca ttttggtggg cggga                                 6455
//
ID   BEL-1_TrNi-LTR repbase;    DNA;    INV; 540 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-1_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-540
RA   Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1036-1036 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 540 BP; 151 A; 137 C; 111 G; 141 T; 0 other;
     tgtttcgttt ccataaaaga aaaaaaacaa aacgtaattt aatcagacca atttagtttc        60
     tttttttatc gttgttctgc tatcctgcgg cagcagtatc gaaacgccaa tctgttggtt       120
     gttcatgtac gcaccaaacc aatcaaattc gacggcatga ctcgcgcgaa gttcgttaga       180
     gtcgccaacg cctcctagcg tcagttttca aaaaaggaag cgcgcgcgcg gcacggtacg       240
     atatcgcggc tcaactaaaa ccgaaaaccg attacacctc ctattaaaac cgtgtgaaat       300
     catcagccag tagccttcat catctcagga tcaccaacgg agtggaagct caacgactag       360
     tgcaggtcgc agcccaggat tcacgaggta cgtgcgtgca ttgtatcttt actgtagcct       420
     gtctaggatc tcgcagaaca acaaataatt aacgtatttt tttatcgtaa gaccacctcc       480
     tggtctcccc agagtggcat ccgcatcaca atttcatttc ggctggtgcg agttgctaca       540
//
ID   BEL-2-I_NVi repbase;    DNA;    INV; 6485 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: internal portion -
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6485
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 744-744 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           689..1867
FT                 /product="BEL-2-I_NVi_1p"
FT                 /translation="MADPAGELAKQKRTSGFILNFKRNTAKLAATARTLPH
FT                 MRTRLSLLDAYWSEYXQRDLXLQANXSAFKGEAYFEXDEYLEVEXXXVEXK
FT                 ADXXQXIEELEIAARPPVTAAGAQNSQVVHAPPVPGPSEFAXMPKCHIPKF
FT                 SGKAEEWETFKEQFSSXVXNKANLPDAIKMQYLVDSVEGPAALRVKGLPLT
FT                 GASFELAWQKLMRRYDNPXRRMHTYMELLIDMKPVKRKSSGELIELLDKAE
FT                 AALKTFKDVGCPCEHWDSWLIHMVERKLDNETREGWRISQESVVGFSTFSA
FT                 LTNFLETRASSLDQDADGDAESPTGKQXSQKGNGSNRSSRRESVSANATST
FT                 SFAKGNRNASVKCSLCRGPHQLQACPXFNGMSXSARFEXCKKRDCALIV*"
FT   CDS           join(2128..4950,4914..6071)
FT                 /product="BEL-2-I_NVi_2p"
FT                 /translation="SVCRGLFVTQRVVXIVRADTTRRFTRIDDKEERLRDS
FT                 SNSTGQKGSSSAPGKSSMLEVSASTTVVGRTRLMATAKVLLQSVDGNSMYA
FT                 RCLIDPCAEVSFVTQRVVQCLSAKIKPVSVSVVGVGAGPSAVSKGEVFLQL
FT                 KSRLNSEFCLEFSALVLREVTGFLPREEVVVSNWDHIRGLQLADPDFARSK
FT                 RIDCVLSAEVYAAIIRPGLRVGATDTPVAQETVFGWILTGRASSAPESDRA
FT                 QSAQACHVEVEPSISTLLERFWEMEEISTSKVLSEEDQYCEDYFADTVYRD
FT                 SKGRFVVRLPFSEKLSEVSFAHTRQIAVACLLRSEKRRAQDSRVDSAYRKF
FT                 MEEYLTLGHMELVNSSHRKDNTFYFTHHPVYSAEVGPEGKFRVVFNGSFGK
FT                 ISLNDVLLTGRKLQSDVTIIISMWRFSKIVFTADIVKEFRQILIHPDDVDW
FT                 QRIVWRSDVSKPIEDYRLLTVTYGTRSAPYLSIRTLLQLASEGSLEFPLAA
FT                 QVLRHNMYVDDAFVGADNESEAIEIRNQLIKLLSSAGMELGKWASNCSAIL
FT                 EDIRAEKQKEFAVEWDEAISALGLKWTPSGDSFRFEVKVPVAPKIVSKRSI
FT                 LSEISKLFDPLGWLSPVLVRAKLMLQDLWINGVDWDSPLTGELLEQWQMLR
FT                 SDLPDLAQLRIPRWFGSSSQTSWELHGFSDASQRAFVAAAYMVIPGQKSAL
FT                 IMSKTKVAPIKTESLPRLELCGSVLLVRLLKHLLDGLLLKPVSVHCWTDSK
FT                 VVLDWLKGHPSRWQTFVANRVSEVITTLPGVQWRHVKSEDNPADCATRGFS
FT                 SEQLQQSSLWWEGPEWIRNDWRKVIDRLPVDVSLDVVNAQVAVEEMEAARV
FT                 GLIRYVQSQHYEEELRCLRSKQRLSSRSHLLRLVPFICPQGLLRVGGRLQH
FT                 SFLQYDEKHSIILPASSIIVKRLIEEYIVRLFMEVFSGVHRQTLHGGVQLM
FT                 LSSLNRTYWISRGLRVVQGVYRRCHRCIRYAAQSVQQQMAPLPSYRVTPQR
FT                 VFAYTGLDYAGPFPILFSKGRGAKSTKGYIAIFVCMVVRAIHIEVVSDLST
FT                 AAFLAAFRRFTARRGLCRMVFSDNGTNFKGAATEIDKLFQRASSVSQEVAA
FT                 ALAKDGIVWSFIPPRAPHFGGLWESAVRSFKHHFKRVIGDTPLTFEEMSTI
FT                 AAQIEACLNSRPLCPLSSEPTDSVALTPGHFLVNAPLNVLPEPFDDVNLKS
FT                 RTCRWKLLSVMRNHFWERWRLEVLHHLQQRNKWLTPGRQLVVGDLVLLKDE
FT                 LCPPSKWPLGRITAVHPGKDGLVRVVTIRTANSEFQRPVVKVIFLPSDESA
FT                 QRAVSSLQPESSQD*"
XX
SQ   Sequence 6485 BP; 1524 A; 1321 C; 1751 G; 1834 T; 55 other;
     ttggtagcag agcgtgcagc attgtggtga agaatcgtga aatcgtgtgt ggaaagaagt        60
     gtccttgcgt tgtgcaagca gtgttagagt tacttcggca gccgttcgac tattcaaagt       120
     cgcaacggtc agagcgtcca gatacttcct ggagttcgct ctctcagttt gccgcttggg       180
     ctaactgctt gttgttgtcg tgtagttttt agatgtttag acggttagaa gttttttttt       240
     gtttagaggt ttagattgtt ttagattgtt ttagaagatt agaggctaga ggtttagagg       300
     ctagaggtca ccggtttagc attggacttg gagagaagcc acgagatcgc cgtttggggc       360
     acatcaagtg gaaaacagaa aagacggcca tcttggagaa cgtttttccc gcataccggc       420
     ttcagcgacg gttagctccc gccaacttcg gacgacgcgc gcagtccggg aaatcagcac       480
     gggagtcgac ggcgtaggca gtgcagaggt ttggtttttt tctctctctc gctctttcgc       540
     tcaagctctg tctcgctttc gctcacttgg cgtcgtcaag ccacgttgag gcagcgacag       600
     tacggtgttt gctctagtat ctctctctct ctctctctct ctctctctct ctctcgctct       660
     cgttagtttt ttttttaatt ttgcaataat ggcagatccg gctggtgaat tagccaagca       720
     aaaacgtacg agcgggttta tactcaactt taagcgcaat actgcaaaat tagcggcaac       780
     tgctcgcacg ctgccgcata tgcgcacgcg attgagtttg ttagatgcat attggtcyga       840
     gtatwctcar agrgayctgr tyytgcargc gaayargtcg gctttcaaag gcgaggcgta       900
     yttygaraam gaygagtatc tcgaggttga gwcgrgttwt gtkgagrsta aagcggatkt       960
     gyttcagwct atygargagt tagaaatcgc cgcgaggcca ccggtaaccg ctgcaggcgc      1020
     gcaaaatagt caggtcgtac acgcaccacc ygttccgggt ccgtcggart tcgcgartat      1080
     gccraagtgy catatcccga aattttccgg raaagccgag gaatgggaga ccttyaagga      1140
     gcaattttcg tcgwtggtga raaacaaggc caacttaccg gatgctatca agatgcarta      1200
     tttagtagay tcggttgarg gkcctgcagc gctcagagta aagggtcttc cgttgacggg      1260
     tgctagtttt gagttggctt ggcaaaartt gatgcgcagg tacgataacc ctamgagacg      1320
     catgcataca tayatggaat tgytgatcga tatgaaaccg gttaagcgga aatcatcggg      1380
     agagttgatc gagttactgg ataaggcgga agccgcgctt aaaaccttca aggatgtagg      1440
     ttgcccgtgc gaacattggg acagttggct tatccatatg gtcgagcgca agttggataa      1500
     tgagacgcga gaagggtggc gtatttcgca agagtcggtg gtaggttttt cgacattttc      1560
     agctctcaca aattttctcg aractcgtgc gtcctcgctt gatcaggatg cagatggtga      1620
     tgcggagtcg cctaccggca aacaakctag tcagaagggt aatggttcga atcgttcgtc      1680
     tcggcgtgag tcagtctcag ccaacgcaac tagcacgtcg tttgctaaag gcaatcgcaa      1740
     tgcctctgta aaatgtagct tatgtagggg tcctcatcag cttcaagcgt gtccaarrtt      1800
     caatggtatg tcsasttcyg ctcgctttga ayattgyaaa aagagagatt gtgccttaat      1860
     tgtttgagat cggacatttt ttggctgatt gcccctcgca gagtcgttgt gccaattgta      1920
     atggcaaaca tcacacgaag cttcacacag atcgacgtca gggaggagac gctgcggaat      1980
     ctacacagtc gacaggtcag aagggttctt ctagcgcgcc tggcaaatca agtatgctgg      2040
     aggtctcagc aagtacaaca gtggtgggta tactgggtta cttcaatccg tagatggtaa      2100
     ttcgatatac gttagatgct tgattgatcc gtgtgcagag gtctctttgt cacgcaaaga      2160
     gttgtgcmaa ttgtaagggc agacaccaca cgaagattca ctcggatcga cgacaaggag      2220
     gagaggctgc gggattcttc aaattcaaca ggtcagaagg gctcttctag cgcgcctggc      2280
     aagtcaagta tgctggaggt atcagcaagt acaacagtgg tgggtaggac ccggttgatg      2340
     gccacagcca aggtcttact tcaatccgta gatggtaatt cgatgtacgc tagatgcttg      2400
     attgatccgt gtgcagaggt ctcttttgtc acgcaaagag ttgtgcaatg tttgtccgca      2460
     aagattaagc ctgtttctgt gtctgtggtt ggtgtcggtg caggtccttc tgcggtgtca      2520
     aagggtgaag tttttcttca attaaagtcc aggttgaact cagaattttg tttggagttt      2580
     tcggcgttgg tgttgagaga ggtaacggga tttttgccgc gagaggaggt cgtagtgtcc      2640
     aattgggatc acatcagggg cttgcagctt gctgatccag attttgctcg ctcaaagcgt      2700
     atagactgcg tgctcagcgc agaggtgtac gctgctatca ttcggccagg gctcagagtt      2760
     ggtgcaactg atactcctgt tgctcaggag accgtatttg ggtggatttt gacgggtaga      2820
     gcgtcttctg ctcctgagtc tgatagagct cagagcgctc aggcctgtca tgtggaagta      2880
     gagccatcaa tttcgacgtt attagagagg ttttgggaaa tggaggagat ttccacctct      2940
     aaagttttgt ccgaggagga tcagtattgc gaagattatt tcgcagatac tgtttatcgg      3000
     gattccaagg gcagatttgt cgttcgcttg ccattctctg agaagttgtc agaggtttct      3060
     tttgcacaca cgaggcagat tgctgtggca tgtttgctcc gctcagagaa gcgtcgagcg      3120
     caggattcta gggtagatag tgcctatagg aaatttatgg aggagtatct gactttaggt      3180
     catatggagc ttgtaaatag ttcgcatcga aaggacaata cgttctattt tactcatcac      3240
     ccagtttact cggctgaggt ggggccggaa ggcaaatttc gtgtggtttt taatggttct      3300
     tttggaaaaa tatcgctgaa cgacgttctc ttgactggtc gcaaattaca gtcggatgtc      3360
     acgattatta tttcgatgtg gagattttcg aagattgtat ttacggctga tatcgtcaag      3420
     gagtttaggc agatcctcat tcacccagat gacgttgatt ggcaaagaat agtctggcgt      3480
     tctgacgttt cgaagcctat cgaagattat aggttgttga cggttacgta tggtacgcgc      3540
     tccgctccat acctctcaat tcgaactctt cttcagctag cgagtgaggg aagtttagag      3600
     tttcccttgg cagcgcaggt gctcagacac aacatgtatg tagatgatgc gtttgtaggc      3660
     gctgacaatg agtctgaggc cattgagatt cggaatcagc tgatcaagct tctgtcatca      3720
     gcaggtatgg agttgggtaa atgggcgtca aactgttcgg ctattctcga agatatccga      3780
     gcagaaaagc agaaagagtt cgctgtcgaa tgggatgagg ctatttctgc attgggccta      3840
     aaatggacgc cttcaggcga ctcgtttcgt ttcgaggtta aggttccagt tgctccgaaa      3900
     attgtgtcaa agagatcgat tctatcggag atttcgaagt tgtttgatcc acttggttgg      3960
     ctatcacctg tattagtcag ggccaaactc atgttacagg atttgtggat taacggtgtt      4020
     gactgggatt ctcctctcac gggggaactt ctagagcagt ggcagatgtt gaggtctgat      4080
     cttcctgact tggctcaatt gcgaattcct cgttggtttg gctcttcctc gcaaacatca      4140
     tgggagttgc atggattttc tgacgcatcg cagagagctt tcgtcgctgc agcgtatatg      4200
     gtaataccag ggcagaaatc ggcgttgatt atgtccaaga cgaaagtagc tcctattaag      4260
     acggagagtt tgcctcgatt ggagttgtgt ggctcggtgt tgttagttag attgttgaag      4320
     caccttttag atggactttt attgaagcct gtttcagtgc actgctggac agactccaag      4380
     gtagttttag attggttgaa gggccaccca tcgagatggc agactttcgt ggcaaacaga      4440
     gtgagtgagg tgatcactac tctgcctggg gtgcaatggc gtcatgttaa gtccgaagac      4500
     aatccagccg attgcgcaac tcgagggttt tcgtcggagc agcttcagca gtcttccctg      4560
     tggtgggagg gacctgagtg gatcaggaat gattggagga aggtaattga tagattgccc      4620
     gtggatgttt cgctagatgt agtaaatgca caggttgctg ttgaggagat ggaggctgct      4680
     cgagtcggtc tgattcgtta tgtgcaaagt cagcactacg aggaggaatt gcggtgtctc      4740
     agaagtaaac aacggttgtc atctcgcagt cacttgctgc gacttgtacc atttatatgt      4800
     ccacagggtt tgctccgagt tggaggccga ttgcagcatt cgtttctgca gtacgatgag      4860
     aagcactcga ttattctgcc agcgtccagt atcatagtca agaggttgat tgaggagtac      4920
     atcgtcagac tcttcatgga ggtgttcagc tgatgctcag ttccctcaac aggacgtatt      4980
     ggatttcacg tgggttaaga gttgtacaag gagtttatcg gcgctgccat agatgtattc      5040
     gctacgctgc tcagagtgta cagcagcaaa tggcaccgct tccatcatat cgagttactc      5100
     ctcagcgagt tttcgcatac accggtctgg actatgcggg accgtttcca atattgttct      5160
     ccaagggcag aggtgccaag tctacaaagg gatatatagc gatctttgtg tgtatggttg      5220
     ttcgggccat tcacattgaa gttgtgtcag atttgtccac tgctgcgttt ctagctgcgt      5280
     ttcgcagatt caccgctcgg cgtggacttt gtaggatggt tttcagcgac aacggcacca      5340
     acttcaaggg cgcagccaca gaaattgaca agttattcca acgggcttca tcagtatcgc      5400
     aggaggtggc agctgcattg gcgaaggacg gtatagtatg gtcttttata cctcctagag      5460
     ctcctcattt cggaggacta tgggagtcgg cagtgagaag ttttaagcat cacttcaaac      5520
     gtgtcattgg agacacgccg ttaacattcg aggagatgtc tacaattgct gctcagatcg      5580
     aagcttgctt aaactctcgg ccgctctgcc cattgagctc tgagcccacc gattctgtgg      5640
     cccttacgcc tggtcacttt cttgtgaacg ctcctctcaa tgtattaccc gagccctttg      5700
     acgacgtgaa tctaaaatct cgcacttgca ggtggaagct actctcggtt atgagaaacc      5760
     atttctggga gcgatggcga ctggaggtat tgcatcattt acagcagaga aacaagtggc      5820
     tgactcctgg acgccagttg gtcgtgggcg acttggtgct tctgaaggac gagctctgcc      5880
     ctccatccaa gtggccactg ggtcgaatta cagcggtaca tccagggaaa gatggtcttg      5940
     ttcgagttgt aaccatccgt actgccaatt ccgagttcca gcgaccagtt gtgaaggtca      6000
     tctttctgcc ctcagacgag agtgcgcaga gggcagtctc cagccttcaa cctgagtcca      6060
     gtcaagactg aagagtttcc cagtgtcatc aatcgaagag attttacaca caacacctac      6120
     actgtaaact cacttagctc gtgaatagat agcatcctag tgaatgttta aatgtagatt      6180
     cattaggtca agtttttatt ttgttcttag tattagcttt gctagaaatt ttgcattaga      6240
     ttatcaatat atagcgaatt taaccttgta tcaattttat tgaatgttgt taaacttaaa      6300
     gcatttaaac ttgttgatcg actgttcgtt raggaattga ttccaaagaa atttagtgag      6360
     aacagttcga tcggtagagt catggtaggg attagcttct ttcgaagtag gctttcctat      6420
     ctttaaattt aatttattgt tattgccggt ctctttattg ctgcgaggca gcaagagggg      6480
     cggta                                                                  6485
//
ID   BEL-2-LTR_NVi repbase;    DNA;    INV; 484 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: long terminal
DE   repeat - consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-484
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 745-745 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 484 BP; 119 A; 112 C; 91 G; 162 T; 0 other;
     tgttcgaata ttagtttaat atgcgaagag agagcgagaa ggttcgagaa gcttgtcacc        60
     ttaagttcaa attcgacggt tttcgctagc ccgcacggca ccaatgaggt tgccatggca       120
     acgcgcgctc gctcgctcct actctgtctc tctccgcctg tttcgcgagc ggtcttctgc       180
     cgctttcgct gatttgtgtt attcagtttt cgtattgccg aagcgctgtg aggactcgcc       240
     tcacagtgtc gaccgttaaa caatatcgtt tgttaacgcg tcggtgctct aacactcttc       300
     taatactctt caattttcca tagtcaatac atttgtaatc acactctttt cttttcaata       360
     aacatcaata gtttgacggt atacatagta taccttttca tctcaaattt aaagagcgtg       420
     ttattatttt cacattaatt gttttgatcc acaagtctct atcaaagtcg agagactata       480
     aata                                                                    484
//
ID   BEL-200_AA-I repbase;    DNA;    INV; 6505 BP.
XX
AC   AAGE02032565;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-200_AA_;
KW   BEL-200_AA-LTR; BEL-200_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6505
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02032565; Positions    1672    8176.
XX
CC   Positions [5461-6039] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1114..6408
FT                 /product="BEL-200_AA-I_1p"
FT                 /translation="MPPITRKGSTLRQLRTQLEEVTASFDDIKIFIQRFDE
FT                 HITASQVEVRLEKIDDLWEKFSETLVELKSHDDFEDEEKYYDKLRMNISEQ
FT                 YYDGKSFLKDKAKSLHEPTDLEQSVREPSMLGVLDHVRLPQIKLQTFCGEI
FT                 DDWLSFRDLFTSLIHWRTDLPEVEKFHYLKGCLQGEPKGLIDSLKITKANY
FT                 QIAWDTLCKRYNNNKLLKKKQVQSLFQLPILTKESVAELRTLVEGFDRIVQ
FT                 TLDQIVEPADYKNLLLVNLLTMRLDPYTRRAWEECAASKDQDTLEDITEFL
FT                 RRRIQVLESLPPRPADPRFHQQPPSSKPKPPAVKASYNSVQSIPGRCVACK
FT                 DSHLLYQCSAFQQLPVADRDSLLKSNGLCRNCFRFGHQARDCQSKFSCRIC
FT                 RKRHHTLLCFRAEKDNPTTVVSVAGGNHPSTSQDSHSSMGPNSTQVANMAA
FT                 TNVSVCNVAQGVSSTVLLATAVVVVEDDIGVRFNARALLDSGSESNFVSER
FT                 LTQRMKVSRNKVDVSVLGIGQGTTKVKHSVQMVLRSRVSDFSREMAFLVLP
FT                 KVTTNLPTTSINTEGWKIPDGIQLADPAFFQSKEVDIVLGIEAFFEFFETG
FT                 RRIPIGNHLPTLTESVFGWVVCGGCSTSKVSQQINCNFSATTELERLIERF
FT                 WSCEQVEFANFYSPEEKMCEEMYQREVQRGSDGRYTVSLPKNESTLRNLGE
FT                 SWNIAYRRLLGTERRLAKDEQLRKQYVTFMEEYLNLGHMRKVEHIEDDSVK
FT                 RCYLPHHPVLKEASTTTKVRVVFDASCKTSSGVSVNDALLVGPVVQEDLRS
FT                 IILRSRTKQILVVSDVEKMFRQILITPEDRPLQSILYRFSPNEDVAVYELN
FT                 TITYGTKPAPFLATRTLQQLATDEELKFPLAARAIREDVYMDDVITGTDDV
FT                 GIAIRMRNQLSDIMECGGFKLRKWSCNIPAVLDGLPAENLAIPDGNGVNLD
FT                 PDQAVKTLGLTWMPLTDTLRFQFEIPPPTLDIPFTKRRILSIIATLFDPLG
FT                 LIGATTVSAKIFMQQLWTLQDANGDRLDWDLPVPPTVGEDWRKFHEALPLL
FT                 NQVRVNRCVIIPNSTSIELHCFSDASEKAYGACVYVRSQDMKGIVQVHLLS
FT                 SRSKVAPLRTQSIPRLELCGALLASQLYEKVKASTRLSVPTYFWTDSTCVL
FT                 RWIAASPATWTTFVANRVAKIQTITDEHNWRHVAGVDNPADLISRGISPED
FT                 IINSKLWWEGPNWLKAEKNTWPGVAIQDNEPGEEERRRTAVACTMSPVAEF
FT                 NDYYLNKFGSFADLIRRTAYWLRLMKLLQTPREKRSGNGFLTTAELSEAKH
FT                 AIIRNVQREVFAEEWEALRNKDNVSKRSALRWFNPYIDKSGLIRIGGRLKH
FT                 SREPEGAKHPIVLPARHQLTRLIVRHFHERLLHAGPQFLLGVVRLQYWPLG
FT                 GRKVAREIVHRCLKCYRIKPSTVEQFMGELPSPRVTASRPFTKTGVDYFGP
FT                 VYIRPAPRRSAVKAYVSVFICLCTKAVHLELVSDLSTERFLQALRRFIARR
FT                 GRPSDIYSDNGTNFVGANNKLLELFRLLRDPVHRERITTELADNGIQWHFN
FT                 PPSAPHFGGLWEAAVRSAKTHLLKVIGESIISSEDFSTLLAQVESCLNSRP
FT                 LVPMSDDPDDLEPLTPAHFLVGSSLQALPDTELLNIPSNRLNQYQQIQQKL
FT                 QHFWTRWRREYLNQLQARTKRWKPAIPVEIGKLVIVKDENVPPIRWKMGRI
FT                 IAVHPGKDDVIRVVTVKTATGEVKRPVERICILPIPINCEEDKAS"
XX
SQ   Sequence 6505 BP; 1815 A; 1498 C; 1522 G; 1670 T; 0 other;
     tttggtcctt cgaaccggat gccgaatccg gggaccggtt gaattgaagc tcgccattgt        60
     tgatcggtca actaacgcgc ggatatcgcc atcgtactca tcgggaatcg ccatcataag       120
     gaaaatcaca atcgactaat cgccatcaaa cccaagacga aaatcgccat tcaccaagga       180
     taaaaggata gcagctgcat tgtgtacatt cgttgcgcca aaaccaccat cattttgtgt       240
     ttgggctgat ggaagcctga atcctgtttt gaagttggac taggagttgg atttggacat       300
     cttgcgctgg aataccgaac aggccggagt atcagtttgc ccaggtaaat actcattagt       360
     tcggtatatg tcttgccgaa gcatatttgc atgttactaa tgccaacatt tcgatgcatg       420
     ctgttggatt cattgcatga gaggactcga caaccattgt gagttagttc agcgttcaac       480
     cgtggatgtt tagactggtt cagcttgtgc gattattgga caaccggtgg accaacgggt       540
     accgatctcg tcacccagat ctagtggaag cctttagtgg acggttgctg tgcaggatca       600
     aggaagaggg aacgccatct tactcccttc taggtgagtg aacatttagt atgtgtactg       660
     ccgaagcaag gcgtacggat aatacacgtt ttgattggag tttttgtgaa tcctcttcat       720
     ttactgccac gcaagccctg atattgaact gctcgttaga gcaagtctgc tgaaaccaac       780
     ccaaattgca ttctcgactg ttggatctac tttgcggagt tgttagtcct ccaggtaggt       840
     tgccacagta tatgcctggc cgaagccaag gttctcctgg atattacacc ccatcttctc       900
     ctcttctttc aaccccaacg tgaattgagc ccatgccgta acgagattga agtgacggcc       960
     ctgtattctc gaatcgtttt gagtatttgg atcattagaa cagttacctg ttctctcagg      1020
     tcagtgaatt tggacagtat atgtccgccg aagcaagttt ttacgcggca tactacacca      1080
     tctcttcttc taccatccga ttgacgtcac accatgccac ctatcaccag gaaaggatcc      1140
     accctgaggc agttgaggac tcaactggaa gaagttacgg cttcctttga cgatatcaag      1200
     atttttattc agaggttcga tgagcatatc acagcttctc aagttgaagt tcgtttagag      1260
     aaaatcgacg atttgtggga gaaattcagt gagacattag ttgaactgaa atctcatgac      1320
     gattttgaag atgaggagaa gtactacgat aaactacgaa tgaatatcag cgaacaatat      1380
     tacgatggga agtcctttct taaggacaag gccaaatcac tccatgagcc aacggatttg      1440
     gagcaatcag tccgtgaacc ttcaatgttg ggcgttctcg accatgttcg gttaccgcaa      1500
     atcaaactgc aaacgttttg tggtgaaatt gatgactggt tgagcttccg ggacttgttc      1560
     acctctttga ttcattggag aaccgacttg ccagaggtgg agaagttcca ttatctaaag      1620
     ggatgtcttc aaggcgagcc gaaaggtctg atcgactcgt tgaagatcac gaaggcaaat      1680
     taccaaatcg cttgggacac tctgtgcaag cggtataaca acaataaatt gctgaagaag      1740
     aagcaggttc agtccttgtt ccagcttccg atcctaacca aggaatccgt ggccgaatta      1800
     cgaactttag tggaaggttt cgatcgaatc gtccaaacgc tcgatcaaat cgtggaacca      1860
     gcggattata aaaacctttt gctggtaaat ctccttacaa tgcgactaga tccatacacc      1920
     cgtcgtgctt gggaagaatg tgcagcttcc aaggaccagg atactctgga ggatattacc      1980
     gaattccttc gaaggcgaat tcaagttctg gaatcccttc cgccaaggcc ggcggaccca      2040
     aggtttcacc aacaaccacc ctcgtcaaaa cccaaaccac cagcagtgaa agccagctat      2100
     aattcggtcc aatcaatccc aggaagatgt gtggcttgca aggatagcca ccttctatac      2160
     caatgttccg cattccaaca attacccgtg gcggacagag attcactgct gaaatcaaat      2220
     ggactttgcc gaaattgctt tcgctttgga catcaggcaa gagattgtca atccaagttc      2280
     tcttgtcgga tttgcagaaa gcgtcaccac actctgttat gcttcagagc ggagaaggac      2340
     aatcctacaa cggtagtatc ggttgctggg ggcaaccacc cttcaacctc ccaagattcc      2400
     catagttcta tgggtcccaa ttctacccaa gtggccaata tggcggccac gaacgtttca      2460
     gtatgcaatg ttgctcaagg ggtttcatca acggttttgc tagcaacagc ggtagtcgtt      2520
     gtcgaggatg acatcggcgt caggttcaat gctcgagccc tattggactc cgggtcggag      2580
     agcaactttg tgtcggaacg attaacccaa cggatgaagg tctccaggaa taaggtagac      2640
     gtttcggttc tcggcatagg gcagggaacc accaaggtga agcattcggt gcaaatggtt      2700
     ctacggtcac gagtttcgga tttctcgcga gaaatggcgt ttctggtatt acccaaggta      2760
     actaccaatc tacccacaac ctcaatcaat acggaagggt ggaaaatacc agacggaatc      2820
     caattggcgg acccagcctt tttccaatcc aaggaagtcg acattgttct tggtatcgaa      2880
     gcgttttttg agtttttcga gacaggaaga agaattccaa tcggaaatca cctaccaacc      2940
     ctcacggaat cggtattcgg ttgggtagtc tgcggtggct gctcaacttc gaaagtatcc      3000
     caacaaatca actgcaattt ctcagcaacc acggagctgg aaaggttgat agaacgcttc      3060
     tggtcatgcg aacaggtgga gttcgctaat ttctactccc ctgaggagaa aatgtgtgaa      3120
     gaaatgtacc aacgagaagt tcaacgtggt tcagacggtc gatacactgt ttctttacct      3180
     aaaaatgaga gtactcttcg caatctgggt gaatcgtgga acattgccta ccggcgtctt      3240
     cttggaacgg aacggagatt ggcaaaggac gagcaattgc ggaaacaata cgttacattt      3300
     atggaggaat acctaaacct aggacatatg cggaaggtgg aacacattga agatgactcc      3360
     gtaaaacggt gttatctacc ccatcacccg gtgctgaagg aagccagcac caccactaag      3420
     gttagagttg tcttcgacgc ttcatgcaaa acgtcttctg gagtgtccgt gaatgatgcg      3480
     cttttggtgg gaccagttgt gcaagaagat ttaaggtcaa tcatcctacg aagtcggacg      3540
     aaacagattc ttgtggtatc cgacgttgag aaaatgttcc gacaaatact gattacgcca      3600
     gaggaccgac ctttacagtc aatactctat cgattttctc ctaacgagga tgttgcggtg      3660
     tatgagttaa ataccattac atatgggacg aaaccagcac ctttcttagc taccaggacc      3720
     cttcagcagt tggcaactga tgaagaattg aaatttccgc tcgcagcaag agcaatccgt      3780
     gaagatgtat acatggatga cgtcatcacc ggtacggacg atgttggtat tgccatccgc      3840
     atgagaaacc agctatcaga tataatggag tgcggcggtt tcaagctcag aaagtggtcc      3900
     tgcaatattc cagcagtatt ggatggtttg ccggcagaga acctggccat accggatggt      3960
     aatggagtca acttggatcc cgatcaagca gtaaaaaccc taggactaac ctggatgccc      4020
     ttgactgaca ccctacgatt ccagtttgaa attcctccac ccacactgga cattccattc      4080
     acgaaacgcc gtatcttatc aataatagct accctgttcg atccccttgg tcttattgga      4140
     gctactacag tatctgctaa gatattcatg caacaactct ggacgttgca agatgcgaac      4200
     ggtgatcggt tggactggga tctcccggta cctccaacgg tgggtgagga ttggcggaaa      4260
     tttcacgaag cacttccact tctaaatcaa gtccgtgtga accgttgtgt catcattccc      4320
     aattccactt ctatagagct acactgcttt tcggacgcgt cagagaaggc ttatggtgca      4380
     tgcgtatacg tcagaagtca agacatgaag ggaattgttc aggtgcatct gttatcatcc      4440
     cgatcgaagg tagccccact cagaactcag tcgatcccac ggcttgaact atgcggtgct      4500
     cttcttgcgt cacaacttta tgaaaaggtt aaggcttcta caagattatc cgttccaact      4560
     tacttttgga cagattcaac gtgtgtctta cgttggattg cagcttcgcc cgcaacatgg      4620
     actacatttg tagccaacag agtagcgaag attcaaacca taaccgatga acataattgg      4680
     agacatgtcg ctggagtaga caatcctgcg gatctgatat cccgtggaat atcacctgag      4740
     gacatcatca atagtaaact gtggtgggaa ggtccgaatt ggctgaaggc agagaaaaat      4800
     acgtggcctg gtgtagcaat acaagataac gaaccaggag aagaagagag acgtcgcaca      4860
     gcagttgcgt gcacgatgtc acccgttgcc gaattcaacg actactatct caataaattt      4920
     ggatcatttg ctgatctcat tcggcgtact gcttattggc taagactcat gaagctcttg      4980
     caaactccaa gagagaagag atcaggaaac ggtttcttaa cgacggccga gttgagtgaa      5040
     gccaagcatg ctattattcg aaacgttcag cgagaagtat ttgccgaaga atgggaggcc      5100
     ttaaggaata aggataacgt atctaagagg tcagcactga gatggtttaa cccatacatc      5160
     gataagagtg gattgattag aattggagga agattgaagc attcgaggga accggaaggc      5220
     gcaaaacatc caatagtatt gccagcacga catcagctaa ctcgattgat tgttaggcat      5280
     tttcatgaaa ggcttttgca tgctggtcca cagtttcttc taggagtagt tcgactgcaa      5340
     tactggccat tgggaggacg gaaggtcgcc agagagatag tacatcgatg tttgaaatgc      5400
     taccgaatta aaccgtctac ggtagaacaa ttcatgggag aactaccgtc cccacgtgtt      5460
     actgcttcca gaccattcac caaaacagga gtagattatt tcggacctgt ctacattcga      5520
     ccagccccac ggcgttctgc agtaaaggct tacgtttcag tgttcatttg cttgtgtaca      5580
     aaggcggtac acttggagct cgtctccgat ttatcaacgg aacgattctt gcaagccttg      5640
     cgtcgattta tagcacgccg tggaaggcct tccgacattt actcagataa cggtaccaac      5700
     tttgtcggtg ccaacaacaa acttttagaa ctcttccgtt tactaaggga ccccgtacac      5760
     cgtgaacgaa ttacaactga acttgccgac aatggaatcc agtggcactt caatccccca      5820
     agtgcaccac attttggggg actctgggag gcagctgttc ggtcggccaa aacgcatctg      5880
     ctaaaggtga tcggagaaag tatcatttcg tcagaagact tttctacatt actagcacaa      5940
     gtcgaatcct gcctcaactc tcgtccttta gttccaatgt cggacgatcc tgatgatctg      6000
     gaaccattaa caccagccca tttcttagtg ggttcctcac tgcaagccct tccagacact      6060
     gaactactca atattccatc gaaccgatta aatcaatatc aacagattca acaaaaattg      6120
     cagcactttt ggactcgttg gcgacgagag tatttgaacc aattgcaagc tagaaccaaa      6180
     cgatggaaac cagctatccc tgttgaaatt ggtaaacttg tcatcgtcaa ggatgaaaac      6240
     gtacctccga ttcgttggaa aatgggaaga attatagccg tgcatcctgg taaagatgat      6300
     gtcattagag ttgttactgt gaaaactgca accggtgaag ttaagcgtcc agtggaaagg      6360
     atttgcattc taccgatccc gataaattgc gaggaagata aagcatcata aattagccct      6420
     acttcccttc ccacactccc atcctgtcga agaggattct cttatttctt ttcagaaatt      6480
     caactaattt ctgggtgggt gagga                                            6505
//
ID   BEL-200_AA-LTR repbase;    DNA;    INV; 691 BP.
XX
AC   AAGE02032565;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-200_AA_;
KW   BEL-200_AA-I; BEL-200_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-691
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02032565; Positions     981    1671.
XX
SQ   Sequence 691 BP; 197 A; 160 C; 154 G; 180 T; 0 other;
     tgtacagttc tgcactgctg tcccctacga tcctggttga ccgtggcgag cacacatgca        60
     ctgagcaaac agcacctagg aaatactgac caaaacaaaa cgcaactatt gttgaccatc       120
     gccttgatca tcgtctggat tgctacagta cttatcacga tcaaccgaga gatgagagaa       180
     cgacggagaa tcaaactgtt cgaatcccga ttgaccaccg attgttgaac tccaggtagc       240
     agtttgtggt tatcgagagt ctctacacga cttctctgga tgaccgcagg ttaaccgatg       300
     accgatgata gtttttttta gttcaattcg aatagccggc gcgaaaggtc atcattggcc       360
     cagttaccca ttttaatctg tgtagatgta gttgttaacg ttaaataaat gtagttagag       420
     tagattgtgt ttaactagaa ataaatgtag tttttgtgaa ttccatccgc gtgttgtgtc       480
     cgattctgtg tggaaagcaa ccccaaggcc tattacggtc ccatccaaac agcaatcatc       540
     attcgtgcga agaaggaggc tttagacgaa gtgaattgga tcccaagctt cactccatcc       600
     ccaattgctg tacaaaccaa ccccccccgt gttggagtcg gaaggcaaac tccgctgtaa       660
     tagaaggaag gtaggattcg actaaccaac a                                      691
//
ID   BEL-201_AA-I repbase;    DNA;    INV; 5961 BP.
XX
AC   AAGE02028917;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-201_AA_;
KW   BEL-201_AA-LTR; BEL-201_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5961
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028917; Positions   35819   41779.
XX
CC   Positions [5002-5550] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..1424
FT                 /product="BEL-201_AA-I_2p"
FT                 /translation="MSNRDHSPRNCQSCSRRDSAESEMVQCNSCQLWEHFG
FT                 CAGVDEQIRRSDTTYVCKRCGKPGVSNDDYLNVPFADQRSKGAKAVSKASS
FT                 KVGSKRGKKVPDPTGSVTSSVRVAMLAEQLKLVEEEQLLEEQEIQEQEEIR
FT                 KRLFDEKERQLEEKKRLTEEAERIRENKLQEELEAKRKQQQIRKESFEKRQ
FT                 EIIGQMAEASSRGGSVVSSGQKVRDWLNNQGARKSDGNLVGGPEERNFKLI
FT                 PEDPIESSNLAQQPAPQNTAHEQSLLPAQPNSVPLLPSPEPLPTCSARMLS
FT                 QAQIAARQVLGKDLPVFDGNPEDWPVFISNYEQSTITCGYSDAENLVRLQR
FT                 SLKGNALESVRSSRPVCPM"
FT   CDS           1828..5961
FT                 /product="BEL-201_AA-I_1p"
FT                 /translation="MPTVFCRKHRRTLEIGSTERSLSDLSQQSRQRPCRSW
FT                 SGCGVEGCRQRHHSLLHSAASSENFNVSPSHVTSGEYQWPLFRIIPVEIHG
FT                 RDSSQTIYAFIDEGSSYTLLEDSVAERLGVRGEIVPLTLKWTGNVTRIESS
FT                 SQIIQFDISGIGASTRYTIAHARTVSRLMLPTQTLKYNELAYRFPHLRGLP
FT                 IEDYELVQPKILIGLDNLRLGVPLKLREGGLTDPIGAKCRLGWSIYGCIPN
FT                 QVSHLTIVGFHVKATSDSVREMNDLLRDYFTLEDIGVNERSEMVESDEEKR
FT                 EKTDELNFPDSYPMAIRRLESLERRLKKEPVLQESVRDQIEDYERKGYAHR
FT                 ASLMELTSVEPNRIWYLPLGVVINPRKPGKVRLIWDAAAKVGDISFNSQLL
FT                 KGPDLLTPLPKVLYQFRQYPVAVTSDIMEMFHQINIRSPDCQSQRFLFREN
FT                 SADIPKIYVMDVATFGSTCSPASAQYVKNRNAEEFATEYPRAAAAIVNKHY
FT                 VDDYLDSFETISEAVDVVNEVKLVHSKGGFTLRRFLSNEPAVLRGIGEEVV
FT                 TEAKDLDLERAGKIESVLGIKWVPNEDVFIYTFGARDDILRLMHNDYVSSK
FT                 REVAKVVMSLFDPFGLIAFLLVHGKVLIQELWVKGTGWDQKIPQDADVRWR
FT                 RWVDSLSQLERLRIPRYYFPSSLPKNFICLQIHLFVDASDAAYAAVVYFRL
FT                 QIEQGTQVALVGAKTKVAPLKALSIPRLELKAAVLGIRLMDTIQCQHTYPI
FT                 TQRFCWTDANTVLAWIRANDHRRYHKFVAVRVGEILSSTQQSEWRWVPSKM
FT                 NVADLATKWNDDPQATNPWFHGPPFRFEAESHWPKQRTTIQTEEELRPAHS
FT                 NLVHFSSTFELERFNKWSKLLRVVAYVFRWINNLQKRRNGENLELGCLTSK
FT                 EFHQAENALLKTAQWELYADEVVVLSKTQGPPENRHPTVNKSSTIYKKYPF
FT                 VDEFGVLRSRGRIDAAPYALVESKFPIILPNQHLITFLIVDSYHRRFRHAN
FT                 RETIFNEIRQRYEISALRRLLTKVERACMFCRIAKVVPRPPIMAPLPKIRL
FT                 TAFIQPFTYTGLDYFGPILIMLGRSNVKRWVALFTCLTIRAVYLEVVHSFS
FT                 TVSCIMAVQRFVARRGQPREFWSDNATCFQGTSNELRMHNITLAEKFTTSQ
FT                 CTWKFIPPSTPHMRGAWERLVRSVKVAMGAVSESSRKPDDETFETILTEAE
FT                 AMIDSRPLTYVPLESADQEALTPNHFLLGNSSGTKFLSTEPLDERVVLRSS
FT                 WKMARYIVDELWRRWLKEYLPMITRRCKWFEDVKDLRVGDLVLIVGETARN
FT                 QWIRGQIEEVYPGRDGRVRQALVRTSSGTVRRAAVKLAVLDVKENSKPAIE
FT                 EAIVSDPHQGLQAGV"
XX
SQ   Sequence 5961 BP; 1741 A; 1356 C; 1414 G; 1450 T; 0 other;
     tatgtcattc tataatcatt ttttcttaaa ttaacattga aattcaataa ttatcgtaag        60
     tacgaaaata aactctaaaa ttatctggaa tgctaatgag cttgtaaaat ttatagaatc       120
     cctaaatact catagcggga atacgttcaa ttgctctcca ctttcgcgat aagtacacca       180
     aatttgtatg tgaactaaaa caaccaatta aatgtatact aatataaagt tctatttcta       240
     gctaaaagca tacaaacaca aaccacaccg tattgctatt tggagttggt gacataaccc       300
     aacatttctt ttagaaattt gtccgggtat tggaagtaat gtcaaatcga gatcattccc       360
     ctaggaactg ccagtcctgc tcacgaaggg actcggcgga aagtgagatg gtgcagtgca       420
     actcctgcca gctctgggag cactttggat gtgccggggt tgacgaacag atccgacgat       480
     cggataccac ttatgtatgc aaacgttgtg gtaagccagg ggtttccaac gacgactatc       540
     tcaacgttcc cttcgcggat caacgctcga aaggagcgaa agcggtttca aaggctagtt       600
     ctaaagtggg ctcaaaaagg ggaaagaagg ttcctgaccc aaccggcagc gtgacgtcta       660
     gtgtacgtgt tgcaatgctg gccgaacagc tgaaactagt cgaagaagaa caacttcttg       720
     aagaacagga gatacaggag caggaagaaa tcaggaaacg cctgtttgat gaaaaggaac       780
     gtcaattaga agagaaaaaa agactcacgg aggaggctga gcggattcgt gagaacaagc       840
     tacaggaaga attagaagca aaacgaaaac aacagcaaat acggaaagag tcgtttgaaa       900
     agcgtcagga aattatcggt cagatggcag aagcaagcag cagaggaggg tcggttgtga       960
     gctccggcca aaaagttcgc gactggttaa acaatcaggg tgctagaaaa tcagatggga      1020
     accttgttgg aggtccggag gaacgtaact tcaaactgat tcccgaagac ccaatcgaat      1080
     catccaacct agcacaacaa ccagcgccac agaatactgc tcatgaacag tcattgttac      1140
     ccgctcaacc aaattccgtt ccgttgctac cgtcaccaga acctcttccc acctgctctg      1200
     ctcggatgct atcgcaagca caaattgcag ctagacaggt tctggggaaa gaccttccag      1260
     tttttgatgg taacccggaa gactggccag tcttcataag taattatgag cagtcgacga      1320
     tcacttgtgg ctattcggat gcagaaaacc ttgtacgcct tcaacgatct ctcaaaggaa      1380
     acgccttgga atcagtgaga agctcccggc cagtgtgccc catgtaatac agactttgcg      1440
     aacccttttt cgtagaacgg aattgcttat tagatcgatg ctgaataaga tccatcaaat      1500
     tccgccgcct cgacatgacc gtctggagac actgatgcac tttggacaca agcatcaacc      1560
     tgtgactctt gacacgttcg gagaatttat gtcggggttg gtaactgcgg caagcgaagt      1620
     ctctttcaat cttccattct caatgaacca aaagcaaact tcagcgatag atttccgaag      1680
     tggaaaacaa aaacctggga atacgggaat gctccaagct cacctgacca acgatactca      1740
     cttcttggac tgtgacagta cccctacaag ttccaaacct gcaaagcaat gtcaagcgtg      1800
     tggtagagta ggtcacagag tagctgaatg ccaacagttt tctgcagaaa gcatcggcga      1860
     acgttggaaa ttggttcaac agaaaggtct ttgtcggact tgtctcaaca gtcacggcaa      1920
     aggccgtgcc ggtcgtggag tggatgtggt gtcgaaggtt gtcgacaaag gcatcatagt      1980
     ctacttcact cagctgcatc atcggaaaac ttcaatgttt caccgagcca cgtcacatcc      2040
     ggagaatacc agtggccact tttccggatc attccagtgg aaatacatgg tcgtgacagt      2100
     tcccagacaa tctacgcctt catcgacgaa ggttcatctt atacccttct agaggactcc      2160
     gtagctgagc gactaggcgt tagaggtgaa atagtaccgc tgacactaaa atggacagga      2220
     aacgttacac ggatcgaatc cagttcgcag attattcagt ttgatatatc cggcattggg      2280
     gctagcactc gatacacaat cgcacacgct cgcactgtta gtcgattaat gttgcctacc      2340
     caaacattga aatacaatga attggcatat cgttttccac atctacgagg attgcccatc      2400
     gaagactatg agttagttca gccaaaaata ctaatcggcc tggataactt aagattgggc      2460
     gtcccgttga agctacgaga aggggggtta acagatccca tcggagccaa atgtcgacta      2520
     ggatggagca tttatggatg catcccgaat caagtatctc atttgacgat cgttggtttt      2580
     cacgtcaagg caacctctga ttcagtacgc gaaatgaacg acttacttcg agactatttt      2640
     actttggaag atattggagt caacgaacga agcgaaatgg tggaatctga cgaagagaaa      2700
     cgagagaaga ccgacgagct taatttcccc gatagttatc caatggccat tcggcgtttg      2760
     gaatcactag agcgtcgact caaaaaagaa cccgtcttgc aagaaagtgt gcgcgatcag      2820
     attgaggatt atgagcgaaa gggttatgct caccgggcaa gtttaatgga gctgacgtcg      2880
     gttgaaccaa accgcatatg gtatcttcct ctgggcgttg ttattaaccc tagaaaaccc      2940
     gggaaagttc gtctgatctg ggatgcagcg gccaaggtgg gagacatttc gttcaactcc      3000
     caactcctta aaggaccgga tcttctgacc ccacttccga aggttctgta tcagttccga      3060
     caatatccgg ttgccgtaac tagcgacata atggagatgt tccatcagat caacatccgc      3120
     agcccagatt gtcagtctca acgttttctg ttccgagaaa actcagcaga tatcccaaaa      3180
     atttacgtga tggacgtggc cacctttggg tctacttgct ccccagcatc ggcccaatac      3240
     gtaaagaatc gtaacgcaga agagtttgca acagagtacc ctcgcgcggc agcagccatc      3300
     gtgaataaac actacgtcga tgactacttg gatagtttcg agacaatttc cgaggcagtg      3360
     gatgtagtga atgaggtcaa actggtacat tctaagggtg gctttaccct acgtcgattt      3420
     ctatctaatg aacctgcagt tttacgtggc atcggggagg aagtggtaac ggaagccaag      3480
     gacctagact tggagcgagc tggcaaaatc gagtctgtat tgggaataaa gtgggtaccg      3540
     aacgaggatg tgtttatcta cacttttgga gctcgagatg atattttgcg tttgatgcac      3600
     aacgattatg tttcttcaaa acgtgaagta gccaaagttg tcatgagtct gttcgatccc      3660
     tttggcctta tagcctttct attggtgcac ggaaaagtgc taattcaaga actctgggtg      3720
     aaaggaaccg gatgggatca aaaaatccct caagatgcgg acgtacgctg gcgacggtgg      3780
     gtggattctc taagtcaact agaaagatta cgcatacctc gctactactt tccatcatct      3840
     ctaccgaaaa acttcatttg tctacaaatc cacctgtttg tggatgcaag tgatgcagca      3900
     tacgcggcag tagtttactt ccgtcttcaa atcgaacaag gaacacaagt agcactcgtt      3960
     ggagcgaaaa ccaaagtggc gccactgaag gctctatcga taccgagact tgagcttaag      4020
     gcagcagtcc tcggcattcg cctgatggat acaatccaat gtcagcacac ttacccgatt      4080
     acccaacgct tctgctggac tgatgccaac actgtactag catggattcg tgcaaatgat      4140
     catcgacgtt atcacaagtt cgtagctgtt cgagtaggag aaattctttc gtctacacaa      4200
     cagtcagaat ggcgatgggt gccatcaaaa atgaacgttg cagatctcgc cactaagtgg      4260
     aacgacgatc cacaggcgac caatccatgg ttccacggtc cgccttttcg ttttgaagct      4320
     gaatctcact ggcctaagca aagaacaacc atccaaacag aagaagaact acgtcctgcc      4380
     cactccaatc tggtccactt ttcatcaact tttgaactcg agagattcaa taagtggtcc      4440
     aaattactac gcgtagttgc gtatgtattt cgttggatta acaatcttca gaagcggaga      4500
     aacggtgaaa atctggaact cggctgtcta accagtaagg agttccacca agcagaaaat      4560
     gctctgctta agacggctca gtgggagttg tacgcagacg aagttgttgt tctcagtaag      4620
     actcaagggc cgcctgagaa tcggcatccc actgtgaaca aatcgagtac catctacaaa      4680
     aaatacccat tcgtggacga gtttggagtt ttgcgcagtc gtggccgtat tgatgctgca      4740
     ccatacgcac tggtcgaatc caagtttccg ataattcttc ccaatcaaca cctcattacg      4800
     tttctaattg tagattcgta ccatcgtcgc tttcgtcacg ccaatcgcga gacaatattc      4860
     aacgaaatcc gccaacgcta cgagatatct gcacttcgac gactgttgac taaagttgaa      4920
     agagcgtgca tgttttgtcg tattgcgaaa gtagtaccaa gaccaccgat catggcgcct      4980
     cttcccaaaa tacgtttgac agcatttatc caaccattta cttatactgg cttggattac      5040
     ttcggaccca tcttgataat gctaggcagg agcaatgtga agcgatgggt ggcactcttc      5100
     acctgcctca ccatcagagc ggtgtactta gaggtagtac actcctttag caccgtatca      5160
     tgcatcatgg cagtccaaag atttgtagct cgtagaggcc aaccaagaga gttctggtct      5220
     gataacgcaa cctgtttcca ggggaccagt aacgagctac gaatgcataa cataactttg      5280
     gcggaaaagt tcactacgtc acaatgcacg tggaagttca taccaccttc aacaccccat      5340
     atgagaggtg cttgggagag gcttgttcgc tcggtgaaag tggcaatggg agctgtatcg      5400
     gaaagttcac ggaaacctga cgacgagacg tttgaaacta ttctcacgga agcagaggct      5460
     atgattgact ccagaccact cacatatgta cctctagaat cggctgacca agaagctctg      5520
     acacctaacc actttttgtt gggcaactct tctgggacaa aatttctatc caccgagcct      5580
     ttagatgaac gcgtggttct taggagcagt tggaaaatgg ctagatatat tgtggatgag      5640
     ctttggcgta ggtggctcaa agagtatctg ccaatgatca cccggagatg caaatggttt      5700
     gaagatgtaa aggatctgcg agtaggtgac ttggtattaa tagtcggtga gacagcgaga      5760
     aaccagtgga ttcgagggca gatagaagaa gtgtaccccg gacgagacgg tagagtgcga      5820
     caagcattag tcaggacatc gtcgggaact gtacgtcgag ctgcagtgaa actggctgta      5880
     ctggacgtca aggagaatag taaacctgct atcgaagaag ccatagtttc ggaccctcac      5940
     caaggtttac aggcgggggt a                                                5961
//
ID   BEL-201_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   AAGE02028917;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-201_AA_;
KW   BEL-201_AA-I; BEL-201_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-230
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028917; Positions   35589   35818.
XX
SQ   Sequence 230 BP; 82 A; 35 C; 48 G; 65 T; 0 other;
     tgtcatggca acactgacga ggacggtcct gcatctgact ctggtctaag ttgcggagaa        60
     atgtcattcg ataagagtga taagaaagcg gtggcaaaaa cagaaaagat aaaatcgaaa       120
     acagttagtg gcaaacgtgg ttcatcagaa attatctaaa acagtgatta tattactact       180
     ataagatagt ttattcttac ttaacgtttg atatttacag gcttaattca                  230
//
ID   BEL-202_AA-I repbase;    DNA;    INV; 2961 BP.
XX
AC   AAGE02028271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-202_AA_;
KW   BEL-202_AA-LTR; BEL-202_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2961
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028271; Positions   17161   14201.
XX
CC   'CACTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           643..2715
FT                 /product="BEL-202_AA-I_1p"
FT                 /translation="MSAADRKLRGLKNRKRSIVSSFAGIKTYVTGYQAERD
FT                 KCEVPVRLENLVALWNEFNEVQTELETLEESEESLDGYLKERTEFERAYYR
FT                 IKGTLLMLNQPSPETQIVAARQEGLNQSNVKLPDIKLPVFSGEFESWMNFH
FT                 DLFISLVHSSTNLSTIQKFYYLRSSLSGEALKLIQTIPISNEQYSVAWNLL
FT                 VSHFQNPRRLKRSYVQSLFDFPSMNREAAPELHALLEKFQTNVKILKQLGE
FT                 NTDHWDVLLIYLLSSRLDAVTRRDWEEYSETHNATKFQQLIEFLEHRVNVL
FT                 ETIASNSANLPPVAKKNNLPRSSSYGAVQQAFRPCPACSNQHLLYLCDIFS
FT                 GMTIDEKENLVRNNHLCRNCLRWGHLARNCVSESSCRKCSGRHHTQLCITE
FT                 SEANNQSASASGIDRQEESTAYSGITSCTSRTITNSSVLLATANIILVDES
FT                 GHEHHARALLDSGSECSFVTESLAQRMHVRRYSANLSIDGIGQSSTRVQCK
FT                 IRSTVKSRITDYNTTIEACILPRVTVELPSKSIDVSGWPIPTGIPLADPEF
FT                 YQSRPIGVVLGAEVFFNIFNVAGRIPLGDSLPTLINSAFGWVMSGTAGTQG
FT                 HVSSSAVCNLAVMANNGRFSQARHSQSRAGSKSGRSQYATHNQQPQKSRVF
FT                 RSSTLCCAQPQFRRNDRCYPADIIRHSGMNRQSKPTSVSQQR"
XX
SQ   Sequence 2961 BP; 892 A; 672 C; 629 G; 768 T; 0 other;
     tggtccttcg aaccggattg gtgcgtcgat aagtattcgc ccaaccagaa tatcttcagt        60
     ttacgcaaat atcccagcaa agacgccgtt ggatagcatc aaaagagttg aatggggaaa       120
     acaacaggca tggcgaatgt ggcacctaat tgcatgcagt aataaataac aatacaaggc       180
     atattccatg cctcactaag gtgagtgtgg ttccattctc ttacgatttg atgaaatttt       240
     ctaccggatc gttttatttt gcacatgttc tgatttacca tcgcattact ggccatcgat       300
     gaagtggatg ctgattcaag aatctttcaa ccgaagtttt ggatgtcggt cgatgaactc       360
     gatgaccggt caatgaactc atatcattca acgttagaca actggagaag ttgccatatc       420
     gaaccatcag cttcacggcg tgcatcggca gagaaatcat ttgtcactga gtccgaccaa       480
     cccaaattac taataagcaa cctgaaagcg gaagtgatca agagctattt caaataatac       540
     aaggcaataa attgcctgtt accaggtaat tgcgattcca tatctgttat cctgtgttgc       600
     gtggtctacg cggatccttt ggttttagat tcttccatcg ctatgtcggc ggccgaccgg       660
     aagctgcgcg gtttaaagaa ccgaaaacgc agcatcgttt catcatttgc tggcatcaaa       720
     acgtacgtta ccggttatca agctgagaga gataaatgtg aagtcccagt ccgtttggaa       780
     aatttagttg ccctgtggaa cgagttcaac gaagtgcaga ctgaactgga aacactagag       840
     gaatccgaag aatcgctcga tggttattta aaagagcgaa ccgaatttga gcgggcttat       900
     tatcgcatca agggtacact tttgatgctc aatcaaccgt cgcccgaaac ccaaatcgtc       960
     gctgcacgtc aagaagggtt gaatcagtcg aacgtcaagc taccggatat aaagctaccg      1020
     gtatttagcg gagaatttga aagctggatg aatttccatg acttgttcat ttctcttgta      1080
     cactcttcga caaatttgtc gacgattcaa aaattttatt acttgcgatc ctcattatca      1140
     ggcgaagcac ttaaactgat ccaaaccata ccgatcagta atgagcagta ctcggttgcg      1200
     tggaatttgc tagtatctca cttccaaaac ccaagacggt taaaacgttc ttacgtacag      1260
     tccttgttcg actttccaag catgaacaga gaggctgcgc cagaactgca cgctctctta      1320
     gaaaaattcc aaacgaatgt gaagatcctc aagcagttgg gggaaaacac agaccactgg      1380
     gatgtattgc tcatatatct tctaagctca cgattagatg cagttaccag gcgtgactgg      1440
     gaagaatatt ccgaaacgca caacgctacg aagttccagc agctaattga attcttagag      1500
     catcgagtta atgttcttga aaccattgcc agcaattcag caaatttgcc tcctgttgca      1560
     aagaagaaca atcttccacg ttcaagcagt tacggtgcag tccaacaagc gtttcggcca      1620
     tgtccagcgt gttcaaatca acatttgctg tatctgtgcg acatattttc gggcatgact      1680
     atcgatgaaa aagaaaactt agtaagaaac aatcacctat gccgaaactg tctgagatgg      1740
     ggacacttgg cgaggaactg tgtgtctgaa agcagttgtc gtaaatgcag tggacgtcac      1800
     catacgcaac tatgtatcac agaatcagaa gcaaacaacc aatcagcttc agcaagtggc      1860
     attgacagac aagaagaatc cacagcatac agtgggatta cgagctgcac atctcgaacc      1920
     ataacgaaca gctcagtgct gttagcaacg gcaaatatca tcctggtgga cgaaagtggc      1980
     cacgaacatc atgcaagagc actgcttgac tcaggcagtg aatgcagttt tgtaacggaa      2040
     tctttagctc aacgaatgca cgttcgacgt tattctgcaa atttatcgat agatggaatc      2100
     ggacaatcat cgacgagggt acaatgcaag attcgatcaa cagtgaaatc tcgaataact      2160
     gattacaaca ccacaattga agcatgcatt ctccccagag ttacagtaga gcttccatcc      2220
     aaatccattg atgtttcagg ttggccaatt ccaactggaa ttcctttggc agaccctgaa      2280
     ttttatcagt ctagaccaat cggtgtggtg ctcggagctg aagtattttt caacatcttc      2340
     aatgttgccg gacgtattcc attaggagat tcacttccaa cactgattaa ttcagcattc      2400
     ggctgggtta tgagcggtac tgctgggaca caaggacacg tatcttcatc tgccgtgtgc      2460
     aacctggctg taatggcaaa caacgggcgc ttctcacaag cacgtcactc gcaatctaga      2520
     gcaggaagca aatctggtcg ttcacagtat gccactcaca atcaacaacc tcagaaatca      2580
     cgagttttcc gttcttcaac tttatgttgt gctcaaccac aatttcgacg aaacgaccgt      2640
     tgttatcctg cagacattat tcgtcattca ggcatgaacc gtcagagtaa accaacatca      2700
     gtttctcaac aacgataaaa aatccaaggc ccttataatt atgggtccag gtaaggacct      2760
     gtccattatt tttcacttat caaaattagg ctaccggtct tattctatgt tacatgctta      2820
     tctaatcaac gagctacacc aaaccagcga ggaattcaaa gcacgagcgg atttactaca      2880
     gctacttctc caaatgctgc tccagaactt aaacggaaac atcagaagat tcagaaatgg      2940
     ttatttctgc cgggggcagg a                                                2961
//
ID   BEL-202_AA-LTR repbase;    DNA;    INV; 455 BP.
XX
AC   AAGE02028271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-202_AA_;
KW   BEL-202_AA-I; BEL-202_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-455
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028271; Positions   14200   13746.
XX
SQ   Sequence 455 BP; 147 A; 80 C; 83 G; 145 T; 0 other;
     tgttcgatta taatatttga tttggaaatt gtcttagcgt ttctaccaca cattcttatc        60
     agtcaccttt acgatcactg ctcatgtttg tctgcctaac acaatgctgc ttcaagtcaa       120
     cactgtgggg ctgagcaaga acgatttatc acttcatgcg atgagagcac aaaaggctat       180
     acatcagaca gcaagagata cgattcgatc tatcgtgcgg gacggcaaaa tttgtctttt       240
     atgtgttatt tatttgaaac ttagattaag caaacattaa atagtttaag aataaaagtt       300
     atatacagtg catgcaacaa ataagtgtct atcaataaac ttaaaggtct aaaatctatg       360
     tgctaagtgt ttaaaatgat tgattgagtg ctgaaagaac cgtaaatgtt ttgtgtacaa       420
     aaattgctcc gctgacctcc ctggctattc gaaca                                  455
//
ID   BEL-203_AA-I repbase;    DNA;    INV; 6478 BP.
XX
AC   AAGE02027244;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-203_AA_;
KW   BEL-203_AA-LTR; BEL-203_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6478
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027244; Positions  116517  122994.
XX
CC   Positions [5561-6142] - Integrase core
CC   'ATACA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           684..5207
FT                 /product="BEL-203_AA-I_2p"
FT                 /translation="MDDEQEYLKQKYELLMQIGDEKESSSRKSAISVKSKR
FT                 DQLEKWMTAGSSADRMGHSKPMIIQTGVTLSLPIASEDGTGAKPPLSRNSL
FT                 AKKIGNPSVPLNEGMLYAGLTVPVQGGSVIALTQSYEQLATAAVSESVSCC
FT                 PTTLGLAPVITVSTIAPTGSSLTRTVPATATVTNARVQRAEKVRVTQSAIS
FT                 GMPPVYSYPEMSIPSSSQNFNGIGGNQLAFPISATGPIPSRGSFPPSSAQL
FT                 PVGSRSAFQYSLATEVAATQNQARYPTVAESTNSLFHSIPSAVDATFGIPV
FT                 NSRVVPGNPASVVNPVIPGSMGIGYVQSSPPVQTIGPTSAQLAARQVMPRN
FT                 NSTSKFNGDPQEWPIFYSAFKNTTDVCGYTDAVNLARLQRCLRGPALEAVR
FT                 SRLLLPASVPYVMDTLHKLYGRPEILINSLLKKVRNVPPPKSDNLNTIVAY
FT                 GLAIQNLVDHIVLADQQAHLSNPMLLQELIEKLPTPLNMQWGSYKQQFVSV
FT                 NLATFNSFMSGLVNLASELSFDVDSAQNHPKQARAEKPRQKEKLFTHVSES
FT                 SNPTKKENAVGETSSKSCSFCDKDDHQILNCAAFKALDIGGRWKAVRQKNL
FT                 CRLCLIPHRKWPCRSKKECSAEGCRIRHHTLLHSTRSGNIDRSTNETVHQN
FT                 HHRTKSFSLFRYLPITLYGNGKQVDTFVFLDDGSSSTLLEEGIAKQLGIEG
FT                 EPDSLWLSWTGKIGRHEKTSRRLSVKISGVNKEEMYLLNDVRTVRELGLPI
FT                 QTLNYPELAKVFPHLQGLPVSSYVNAKPGMIIGIEHVRMLTSLKTREGGNS
FT                 DPVAARTRLGWCVYGRNTPSDESVEQLHVHAVESISNVELHDSMRKFFAVE
FT                 EAAVTHQLESDEDKRARNILETTTVRREGRMEVGLLWRRDNFCFPDSFQMA
FT                 FSRLKGLENRLAKDSVLRKRANEQIESFEQKQYVRKVSPEELRNTDSHRRW
FT                 YLPLGIITSPKKPNKIRMVWDAAAKVGGVSFNDMLLKGPDLLVPLVDVLLR
FT                 FREGKIAVCSDIREMFLRILIRDEDRWSQCFLWRNNPKEDVQVYMINVAIF
FT                 GATSSPCSAQFAKNKNALEYAEQYPRAVRAIVKGHYVDDFLDSVNSVDEAV
FT                 QLVQQVQHIHASAGFEFGKILSNSPKVLERLGETSPSTVKSLNLDKDAVHE
FT                 RVLGVMWVPIADHFTPTKRQVLRAVMKLYDPLGFVAHFVVHGKILMQEIWR
FT                 SGTNWDEPIAEHLRELWTKWIKLYESINEVQIPRCFFGDFQPQAIDGIEIH
FT                 VFTDASIAACACVAYLRMLHQGDSWCSMVAAKTKVAPLRPLSVPRLELQAA
FT                 LMGSRLLQRICTALTLNIRKRFLWTDSSTVLAWIRSDGRRYHQFVSFRIGE
FT                 ILSLTSVDEWHYVPSKLNVADDATKWSAGPSFDPENRWFKAPSFLRESEEC
FT                 WPTELAKDLSTADAASEEMHTVAVHQGIDELVEVERFSSWSRLVRTMVYVY
FT                 RASKVWKRILNNHKSSLVPDRSEFVVAEETLWKQAHIHKRFKN"
FT   CDS           5288..6223
FT                 /product="BEL-203_AA-I_1p"
FT                 /translation="MDSRISDAPHVSYTMKYPVLLPKDHRITFLLVQAFHQ
FT                 RFLHANGETVCNELRQRFYIPKLRVLVRKVSRKCQLCKIKKAKPLAPMMGA
FT                 LPKVRLMPFIRPFTFVGVDYMGPFLVKVGRSSVKRWICLFTCLTIRAIHLE
FT                 LVHSLSTTSCVMAFRRFVARRGAPSEIFSDNGTNFVGANRQLSEEKRKIER
FT                 INEDCSSTFTNANTQWHFNVPVAPHMGGPWERMVRSVKVAMQAISDSARYP
FT                 SDEVMEMIMLEAEAIVNSRPLTYVPLEDENQEALTPNHFLLYGSTGIKQPA
FT                 MNPANDAGVSTYADETNEMV"
XX
SQ   Sequence 6478 BP; 1822 A; 1441 C; 1652 G; 1563 T; 0 other;
     atctccaagg taattcatcc taagttggat gattgattgt tgcccgtcgg acgtttctgc        60
     ttcagttccg acgaatcgcg aaggcagaaa ggcgatctat ccaagaagac atctttcgcc       120
     acagtacgct aagcgcgggg gaggaaccta acttcacatt cactgactgg atgcagccat       180
     gggacggtgt acgagaagca gctaagtgca gtaaatttag ctcgtattta ctgtatccct       240
     tgttaccgca tttgctcgtt cgcaaatcgc tctactagag ataagttagt cagagttaga       300
     gttaggttca ttagtgcaac gatgtcggat aaaaatgtca atgtgtcgac tccgggcggc       360
     gagaagcact gcgatcgcgg tgatatcgat gataatatgg tgtgttgcga cgtttgtgaa       420
     gcttgggtac actttcagtg cgctggtgtt accgattcca ttggagatcc cgataggagt       480
     tggaaatgta gtgcttgttt agccgactgg aatggctcct cgaagtctga ggtgtcattc       540
     aacgagtcgt cggttagcaa gagtagtcgt gtttcgttga gactacagct cagcctgcaa       600
     ctgctcgaag agcaacagaa gttgaataaa aagcgtgcag cggaagagtt gaaaattcgt       660
     agacaggagg aaggttgaag gagatggatg atgaacagga gtacttgaag cagaagtatg       720
     agttgttgat gcagatcggt gatgagaagg agtcttcgag cagaaaaagc gccattagtg       780
     taaagagtaa gcgtgatcaa ctggagaagt ggatgactgc aggatcctca gcggatagga       840
     tgggacattc gaaaccgatg attatccaaa cgggggtaac cctttcactg ccaatcgcca       900
     gtgaagatgg caccggagca aaaccaccgt taagcaggaa ctctttggcg aagaagatag       960
     ggaacccttc ggttccgcta aacgagggta tgctatatgc aggtctgact gttccagttc      1020
     agggcggaag cgtcatagct ttgacgcaat cgtacgaaca gctggcgacg gcagcagtgt      1080
     cagaaagcgt gtcatgctgc ccaactacgc ttggtttggc accagtgata actgtatcta      1140
     caattgcacc gaccgggtct tccctaacac gcactgtccc ggcgactgcc acagttacta      1200
     acgcgagagt tcagagagcg gagaaggtta gagttacaca atccgctatt tctggcatgc      1260
     ctccggtcta ttcgtatcca gagatgtcaa ttccatcgag ttcgcaaaat ttcaacggta      1320
     ttggtggaaa tcaactagcg tttcctatat cagctacggg tccaattcca tctcgaggtt      1380
     cgtttccgcc aagttcagct caactaccag ttggaagtcg ttccgcattc cagtattcat      1440
     tggctacaga agttgctgca actcaaaatc aagcgcgcta tccgacagtt gcagagtcaa      1500
     caaattcgtt atttcactct atcccatcag cagttgatgc aaccttcggc attccagtta      1560
     attcacgagt tgttccggga aatcctgcat cagttgtgaa tccagtcata ccagggtcaa      1620
     tgggaatcgg ttatgtgcag agcagtccgc cagttcagac gattggacca actagtgctc      1680
     aattggcggc acgacaagtg atgccacgta ataattcaac gtcaaaattc aacggtgacc      1740
     ctcaggagtg gccgatattt tatagcgctt tcaagaatac tacggacgta tgcggttaca      1800
     cagatgcagt gaatctggcc aggctacagc gttgtctaag aggaccggca ctggaggcag      1860
     tgcgtagtcg tctgttattg ccagcttcgg ttccttatgt gatggacact ctgcacaagc      1920
     tatatggacg acccgaaata cttatcaact ccctactgaa gaaggttaga aacgttcctc      1980
     ctccgaagtc ggacaatttg aatacgatcg tagcatacgg tttggcgata caaaatctcg      2040
     tcgatcacat tgtcctagcg gatcaacaag cgcacctatc aaatccaatg ctgttgcagg      2100
     agttgataga gaagttaccc acgcctctta atatgcagtg gggttcctac aaacagcagt      2160
     tcgtcagcgt caacttagca acgttcaaca gctttatgtc gggactagta aatctcgcat      2220
     ccgaactaag tttcgatgtg gattcggccc aaaatcaccc gaagcaagct agggctgaaa      2280
     aaccgagaca aaaagagaaa cttttcaccc acgtgagtga gtcatcaaat ccaacgaaga      2340
     aggagaacgc agttggagaa acttcttcaa aatcctgctc attctgcgat aaagatgatc      2400
     atcagatcct gaactgtgcg gccttcaaag cgttggacat aggaggacga tggaaagctg      2460
     tgcgacagaa gaatttatgc cgattgtgtt tgattccgca tcgaaagtgg ccttgtcggt      2520
     cgaaaaagga atgtagtgct gaaggatgtc gtattaggca tcatactctg ctgcatagta      2580
     ctcgcagtgg aaacatcgat cgaagcacca acgaaactgt ccaccaaaac caccacagaa      2640
     caaaatcctt ctccctcttt cgttaccttc ccataacgct ctacgggaac ggtaagcaag      2700
     tagacacttt cgtgttcttg gatgacgggt cgtcatcgac gttgctcgaa gaaggaatcg      2760
     cgaaacagct tggaatcgag ggcgagccag atagcctctg gttaagttgg acaggaaaaa      2820
     ttggtcgaca tgagaaaact tctaggcgac taagtgtgaa aatttctgga gtcaataaag      2880
     aggaaatgta cttgctgaac gacgttcgga cggtccgcga gcttggactt ccgattcaga      2940
     cgttaaacta tcctgaacta gcgaaggttt tccctcacct tcaagggctt cctgtatcca      3000
     gttatgtcaa cgccaaacca ggcatgatca ttggaattga acatgtgcga atgctcacca      3060
     gtttaaaaac ccgcgaagga ggcaacagtg acccagtcgc tgcaagaact cgactagggt      3120
     ggtgcgtgta tgggagaaac accccaagcg atgagtctgt cgagcagtta cacgtccatg      3180
     ctgtcgagag cataagtaat gtcgaactgc atgattctat gcgaaaattc tttgcagtcg      3240
     aagaggcggc tgttacgcac caattagagt ccgacgagga caaacgagct cgaaatatcc      3300
     ttgaaactac caccgtgcga cgagaaggtc ggatggaggt aggtctgctg tggcgtagag      3360
     acaatttttg ctttccagac agctttcaaa tggcatttag tagattgaaa gggctggaaa      3420
     accgtttggc gaaggattca gttctacgaa aaagagcgaa cgagcaaatc gagagcttcg      3480
     aacagaaaca gtacgtccgt aaagtttcgc cggaagagtt aaggaacaca gactctcacc      3540
     ggagatggta tcttccactc ggaataatta cgagccccaa aaaaccaaac aaaatcagaa      3600
     tggtgtggga tgcagcagca aaagtcggtg gagtatcctt caatgacatg ctactcaaag      3660
     gaccggatct tctagtcccg ctcgtagacg tgttgctacg gttcagggag ggtaaaatag      3720
     ccgtctgttc tgacatccgc gaaatgtttt tgagaatatt aattcgggat gaagatagat      3780
     ggtcgcagtg ctttctgtgg cgcaacaatc ctaaagagga tgttcaagta tatatgatta      3840
     acgtcgccat attcggagct accagctccc catgttcggc gcaattcgca aagaataaga      3900
     atgccctcga atacgcagaa cagtacccca gggcagtgag agcgatagtt aagggtcact      3960
     acgtagatga cttccttgat agcgtcaatt ccgtggacga agcagttcaa ctagtccaac      4020
     aagtacaaca cattcatgca tcagcgggtt ttgaatttgg gaagattttg tcaaactcac      4080
     cgaaagttct agaacgttta ggagaaacca gcccgtctac tgtcaagtcg ctgaacctag      4140
     ataaagatgc ggtccatgag cgtgttttag gagtaatgtg ggttccgata gctgatcact      4200
     ttacgcctac aaaacggcaa gtactgcgag ccgtaatgaa gctatatgac ccattagggt      4260
     ttgtcgccca ttttgtggta catgggaaaa tcctgatgca ggagatttgg agatcgggaa      4320
     caaactggga cgagcctatt gcagagcatc tacgagaatt atggaccaag tggataaaac      4380
     tatacgagag catcaacgaa gtacaaattc ctcgctgctt tttcggtgat tttcagccac      4440
     aagctataga tggaatcgaa attcacgtgt tcacggacgc cagcatagca gcgtgcgcat      4500
     gtgttgccta tctcagaatg ctgcaccaag gcgatagctg gtgttcgatg gtggcggcga      4560
     aaaccaaggt agcgccacta cgaccgcttt cagtacctcg tctggaactc caagcggctt      4620
     tgatgggatc gcgtctactt caacgtattt gtacggctct cactctcaat attcggaagc      4680
     ggttcttgtg gacggactca tctacagttt tggcgtggat tcggtcagat gggcgacgat      4740
     accaccagtt cgtttccttc cgcatcggtg aaattctctc ccttactagc gtggacgaat      4800
     ggcactacgt tccatcgaaa ttaaatgttg ctgacgacgc caccaagtgg agtgctggtc      4860
     catcattcga cccagagaac cgatggttta aagcaccgtc attcctgcga gaatccgaag      4920
     agtgctggcc gactgaattg gcgaaagact tgagtacagc cgatgcagca agtgaagaga      4980
     tgcatactgt agctgttcat caaggaattg acgagttagt tgaagttgaa cgtttctcga      5040
     gctggagtcg tctggttcgg actatggtat atgtgtaccg agcatcgaaa gtctggaagc      5100
     gaattctgaa caatcacaaa agcagcttag taccagatcg aagcgaattc gtagttgcag      5160
     aagaaacgct ctggaaacaa gcgcatatcc acaagagatt caagaattga gaaatggaaa      5220
     aagagttccc aaacatagcc cgctgtatac gttgtctccc attctcgacg agtatgggat      5280
     tatacggatg gatagccgaa taagcgacgc accacatgtt tcatacacaa tgaaataccc      5340
     cgtattactc ccaaaagacc atcgcataac gtttctcctt gtgcaagcct ttcatcagcg      5400
     atttctccat gcaaacggtg aaaccgtctg taatgaacta cgacaacggt tttatattcc      5460
     gaaactgcgg gtgctcgtcc ggaaagtaag ccgcaagtgt caactctgta aaataaagaa      5520
     agctaaacct ttggccccaa tgatgggagc tttaccgaaa gtacgtttga tgccgtttat      5580
     tcgacctttc accttcgtag gcgtcgacta tatgggacca ttcttggtca aggttgggcg      5640
     tagcagtgtg aaacggtgga tttgtctctt cacctgctta accattcgcg ctatccatct      5700
     agagctggtg cacagcctat caacaacttc ctgtgtaatg gctttccgga ggttcgttgc      5760
     tagaaggggt gctccatcag agattttctc ggataatggc acaaattttg tgggtgccaa      5820
     tcgccagtta tctgaagaaa agcggaagat cgagaggata aacgaagact gttcgtccac      5880
     ttttaccaat gcaaacactc aatggcactt caatgttccc gtagctcctc atatgggagg      5940
     accatgggag cgcatggtgc gatccgtcaa ggttgcaatg caagctatat ctgatagtgc      6000
     acggtacccc agtgacgaag tgatggaaat gattatgtta gaggctgaag caatagtgaa      6060
     ctcccgtccc ctgacctacg taccactaga ggacgagaac caggaggcac ttacgcctaa      6120
     ccattttttg ttgtacgggt ctaccggtat aaaacaacct gcaatgaatc ccgcaaacga      6180
     cgcgggagta tctacctatg ctgacgagac gaacgaaatg gtttgaaccc acaaggccgt      6240
     tgaaaccagg cgacttagta attgtagtgg atgaggcctc gaggaatagt tgggagagag      6300
     gccgtatttt ggagacctat ccggacaaat ccgggaatgt gcggtgtgcg aaggtacaga      6360
     caaatagagg agtcttcagt agacctgctg ttaaattggc cgttcttgat gtgacggcaa      6420
     atgacgggaa cctagaagat attccgaggg aaccggaagt agttcacggg gtggggaa        6478
//
ID   BEL-203_AA-LTR repbase;    DNA;    INV; 377 BP.
XX
AC   AAGE02027244;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-203_AA_;
KW   BEL-203_AA-I; BEL-203_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-377
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027244; Positions  116140  116516.
XX
SQ   Sequence 377 BP; 106 A; 70 C; 79 G; 122 T; 0 other;
     tgttgccaat acccctcgtt acgatggata ggtagtgaaa cgacttacca ttccctcgga        60
     cgaacctgta tagaaacgtg gaatgataaa ctgcgaatga catttgtccg ttatctgcta       120
     tccgtgagtt tatggttagt cagcactatc agatcgttct tcaaattata tttcgaaaat       180
     taaggtatct gctttcgtaa aaagtccgtc agttttcgta gaattatagt tgagcattca       240
     agatttctgt ggattgatcg tcgttaaatc cctttgcaaa gattgccagt catattatac       300
     gcagaagaac actgaattac cttgtagctg cttgatagcg acttacaaga cggtgttttg       360
     tttggcaatt gggaaca                                                      377
//
ID   BEL-204_AA-I repbase;    DNA;    INV; 6873 BP.
XX
AC   AAGE02024599;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-204_AA_;
KW   BEL-204_AA-LTR; BEL-204_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6873
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024599; Positions   23041   16169.
XX
CC   Positions [5850-6428] - Integrase core
CC   'AACAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1524..6782
FT                 /product="BEL-204_AA-I_1p"
FT                 /translation="MSKPITRNADSLKSLTTRLKGLRLSLSNICQFVRNFK
FT                 DDTSATQINVRLEKLDSLWVQISETIWEIEAHEEFEEQESLQKDQLEMENR
FT                 YYDAKSFLAEKAQVFQSNSIQNQSIRSGDATLHGVMDHVRLPQIKLQCFDG
FT                 NIDDWLSFRDLYTSLIHEKPDLPEVEKFHYLKGCLAGEAKALIDPLKITRD
FT                 NYQVAWKTLLKRYNNNKLLKKKQVQAIIKLPSLSKESITELHKLVDGFDRV
FT                 VQTLDQIIQPAEYKDLLLVELLSSRLDPITRRGWEEHSSTKQQDTFKDLLE
FT                 FLQRRIQILEALPAKVESRVDQVLQPKRKPFSAKVSNNAVQSNNAKCPSCT
FT                 EIHGLHTCPDFLKMSISSRESLLRAQSLCRNCLKRGHLARKCSSKFSCRYC
FT                 KARHHTLLCFKAGETNGSQESSGKANLRDNSQQNDTSANSKAANASAVEST
FT                 SSNAAQCVSSQILLATAVVVIEDDQGSRYPARSLLDSESECNFISENLYQM
FT                 MKVSVQKANISIMGIGQSGTRASRKIKAAVRSRTSSYSRTMEFLVLPKVTA
FT                 CLPTSTVEANGWDIPVDIELADPEFFRSRKVDLVLGIQAFFSFFPSGREIQ
FT                 LGMGLPVLTESVFGWIVTGEVTSASQGTKYTCNMAVFDDLEDLMERFWSCE
FT                 EVGAVSKYSPEEARCEEQYERTVKRDSDGRYTVSLPKNNEVLAGLGESKDI
FT                 ALKRLRAVERRLSRDERLQKQYSDFMTEYLELGHMRMVDESEEKAVKRCFL
FT                 PHHPVIKESSTTTKVRVVFDASCKTSTGVSLNDALYAGPVVQQDLRSIVLR
FT                 SRIRQIMVVADVEKMFRQIWTSLEDTPLQCILWSTPDGKVVPFELLTVTYG
FT                 TKSAPYLATRTLKQLAFDERERFPLAAPTIEEDVYMDDVISGADDVESAIE
FT                 LRRQVDAMMDSGGFKLRKWASNRPEVLEGIPCENLALPDSNGIDWDQNAEV
FT                 KALGLTWLPNADQFRFKFEVPPITENQILTKRKVLCYIARLFDPLGLLGAT
FT                 ITSAKVFMQRLWCLKNEAGCILQWDDPLPEMVGEEWRTFHKQIPMLNEIRV
FT                 PRCVVSPNSVSVEYHCFSDASIVAYGATIYVRSQRDDGSVSVHLLTSKSKV
FT                 APLKVQSLPRLELCGALLVSQLWEKVAESLKAEEKVHFWTDSTCVLHWINS
FT                 PPGTWTTFVANRVAKIQGLTESDQWRHVPGNTNPADLISRGVSPTSIVGND
FT                 MWWHGPTWLLEIPEKWPKPVETHPEEELERRRNVVACTASKESGFISDLVA
FT                 KFSSFIRLIRMTAYWLRFLNNLRCSAIEKQTGYLSTHELQLAEQMIVRKVQ
FT                 AESFVDEIGKLTAGGSVARNSPLRWFNPRIDENGILRVGGRLAHSEESHQT
FT                 KHPIVLPARHALTELVLRHFHQIYLHAGPQLLLGTVRQRYWPLGGRNLAKK
FT                 IIHQCQRCFRAKPSIMQQQMGELPAARVTVSRPFSKSGVDYFGPVYLRAGR
FT                 GRKPTKAYVAIFVCMATKAVHMELVSDLSTERFLQALRRFFSRRGRSTDIY
FT                 SDNGTNFVGARNQIQELFELLKNKTHRETVSRECANEGIYWHFNPPSAPHF
FT                 GGLWEAAVRSAKFHLLRVLGGNSVSHEDLFTLLTQVEGCLNSRPLTSISDD
FT                 PSDLEPLTPAHFLIGGSLLALPDPDLSDVQLNRLSRFKVVQRQLQDFWKRW
FT                 RLEYLSQLQARSKHWQPAVDVQVGRLVVIVDSNQPPTQWKMGRIEELHPGD
FT                 DGITRVVTVRTATGSLKRPVVKLCLLPTLTEED"
XX
SQ   Sequence 6873 BP; 1857 A; 1571 C; 1712 G; 1733 T; 0 other;
     taagctggtc cttcgaaccg gatttccact accgccagac ctcagatcgg tcgaatctcg        60
     acgcttcgac cacttcgcgc caagaacgtc catcaaaagg ccattctttg gacaaaggac       120
     ttccgccata ctacagtgcc gtgaatagat ccatcgccat ctcaaggatc ttcaaaggga       180
     gtagtcgcca tctcaagccg tcttcaaagg atccttcggc cattcaagat cgtgtaaaag       240
     gatccatccg ccatccttca tctagtcaat tggaattgat cgaagggacg gttccgaaac       300
     catttgccgt cattaattag aagcgacatc gactgaagcc ttcgagtggg aaattgaact       360
     cggcctgcat tcttggagcg tctacaggat tgtagaataa ccagagcgtt gctctactac       420
     cggtcaggta tgtaagaaca aatatagtaa atgtcttgcc gaagcatgtt caatattccc       480
     cactaacgca aacccttcga tctcttgtgt gactgtgatt catcgagccc caactggacg       540
     gcaatctggt gtattgagct gctacgctgc gattattcgg tgtggaaagt gtggaccatc       600
     aacggatacg tcggtgaaga attcggttcg cgaagaactg atttgcgact tccatccaac       660
     ggcgaaagcg gtgacgatta cgtacggcga ggacgacgat ttgactgtgt tcaacgacaa       720
     cgaacgatcg attgcgacca ctagacagct agcacgccgt cgcagtagct tcgaagcctg       780
     ggcatcacgg aacggccatc gcggtcaggt aaatacactt taaagtatat gcccggccga       840
     agctggatga ttgattctac acacctgaat aaatttaatt cctttcgatg taaattggac       900
     cgttgcgagt caactcattt atggacgcaa tccctgaggt ttacgttggt tttcggactt       960
     gaactactgc attcagcgcc atctttagtt ctccaggtga gactaagtat atgtcctgcc      1020
     gaggcaggcc attttgtgaa actacattgg ttcttctttc tccgctgcac tgatttggat      1080
     ctgaattgag acgatttccc atttatcgcc acgaaattga tgaattgtga cgaattgagg      1140
     catttttgaa ctcggctacc attgcacgct gttgtttcat aggtgaggcg aacagtatat      1200
     gtctagccga agtttcaatt ttgtatacta cattgagttt tccactcctt cgcgcttcac      1260
     tggcttgaat cggaatctga ggcgaataat catacattga ggtgaatcaa attggagatt      1320
     gctgctttgg cttcggtggt gccactgttt cttctcatag gtgagctgaa cagtatatgt      1380
     ctagccgaag caaccaaatt tgaatactac atctccgttt tctccgattt tggattttgc      1440
     tacgattcaa cggaactgcg agtggaacat cctgcccaac tgccaacttt agttcgagtt      1500
     tccgttacga gaggctttca aacatgtcga aacccatcac gaggaatgct gattccttga      1560
     agtcgttgac tacaaggctc aagggactca gattatcttt aagcaatatt tgccagtttg      1620
     ttagaaactt taaggatgat acttcagcca ctcaaatcaa tgttcgtctt gagaagttag      1680
     attcgctatg ggtacaaatt agtgaaacta tttgggaaat cgaagcccac gaggagttcg      1740
     aggagcagga gagtcttcag aaggatcaat tggagatgga aaatcgctac tacgatgcga      1800
     aatcgtttct agcggagaag gctcaagtgt tccagagtaa ttctatccag aaccaatcaa      1860
     ttcgctccgg agatgccact ctacatggcg ttatggacca cgttcgatta cctcaaatca      1920
     aacttcaatg ttttgatggt aatatcgatg actggctgag tttcagggat ctctacactt      1980
     ccttgatcca tgagaagcca gatttaccgg aagttgagaa gttccactat ctcaaggggt      2040
     gcttagcagg cgaggctaaa gcactaatcg atccgctaaa gatcaccagg gacaactatc      2100
     aagttgcttg gaagacgttg ctaaaacgtt acaacaacaa caaactccta aagaagaagc      2160
     aagtgcaagc aattatcaaa ctgccttcgc ttagcaagga atcaatcacg gaactccaca      2220
     aattggttga tggattcgac cgtgtggttc agacactcga ccagattatc cagccagccg      2280
     aatacaagga tttgttgctg gtggaactcc ttagttctcg tctcgatccc attacacgac      2340
     gagggtggga agaacattcg tctacgaaac agcaggacac cttcaaggac ttgctggaat      2400
     ttctacagcg gagaatccaa attctcgagg ctctaccagc gaaagtagaa tcaagagtcg      2460
     atcaagtcct tcaaccgaaa cggaagccat tttcagcgaa agtcagcaat aacgccgtac      2520
     agtcgaacaa cgctaagtgt ccctcgtgta cggagattca tggacttcac acgtgtccag      2580
     actttctgaa gatgtcgatt tctagtcgag aatccctttt gcgggctcag tcactctgcc      2640
     gcaattgtct caagcgtggt catctagctc gaaaatgctc gtcaaagttt tcttgtcggt      2700
     attgtaaggc tcgacaccat acgttgctgt gtttcaaggc aggagaaaca aacggaagcc      2760
     aagaatcttc agggaaggcg aatctgagag acaattctca gcagaacgac acaagtgcaa      2820
     attcgaaggc agcgaatgcc tcagcggttg aatctacttc ttccaacgcg gcacagtgtg      2880
     tttcatcgca gattcttctg gctacagcag tcgtcgtgat cgaggacgac cagggctctc      2940
     gctatccagc acgttcacta ctggattcag agtcagagtg caacttcatc tccgagaatc      3000
     tgtaccagat gatgaaggtt tcagttcaaa aggccaacat ttcgattatg ggaattggac      3060
     agtctggcac aagagcatct cgtaaaatca aggcggccgt cagatctcga acttcgtcat      3120
     actctcgaac gatggaattt ctggtactac cgaaggttac agcttgcctt ccaacctcta      3180
     cagttgaggc aaatggatgg gacataccgg tagacatcga attagcggat ccggagtttt      3240
     tccgatcaag gaaggtcgac ttggtgttgg gaatccaagc tttcttcagt ttcttcccgt      3300
     ctggaaggga aattcagttg ggcatgggcc tgcctgtact caccgagtcc gtttttgggt      3360
     ggatagtgac aggcgaagtc acttctgcaa gtcaaggtac caaatacact tgcaacatgg      3420
     cagttttcga tgatctggag gacctaatgg aacggttttg gtcctgcgaa gaagtgggag      3480
     ccgtcagcaa atactctcca gaagaagcgc gctgcgagga gcagtacgag cgcacagtca      3540
     agcgagactc ggatggacga tacacggttt ctcttcccaa gaacaacgaa gttttggcag      3600
     gccttggtga atcaaaggac atcgctctga agcggctgcg agcggtggaa cgaaggttgt      3660
     caagagacga acgtcttcaa aaacagtata gcgacttcat gaccgaatat ctggagctcg      3720
     gtcacatgcg aatggtggat gaaagcgagg aaaaggcagt taaacggtgt tttctgcccc      3780
     accatccagt tatcaaggag tcaagtacca cgacgaaggt gagagtggtc ttcgatgcct      3840
     cctgtaaaac ttctacgggt gtgtcgttga atgatgcact gtatgctgga cccgtcgttc      3900
     aacaagatct gaggtcgatc gttcttcgta gtaggattcg tcaaataatg gtcgtagctg      3960
     atgtcgagaa aatgtttcgg caaatttgga cgagtttgga ggacacgccg ctacaatgca      4020
     tcctgtggag tactcctgat gggaaggtgg taccgtttga gctccttact gtgacgtacg      4080
     gcaccaaatc agcaccatat ctcgccactc gaaccttgaa acagctggca ttcgatgaac      4140
     gagaaaggtt tccactggca gcaccgacaa tcgaagagga cgtgtacatg gacgacgtta      4200
     tttctggagc agacgacgtc gaatctgcga ttgaattgag gcgacaagtc gacgcaatga      4260
     tggatagcgg tggattcaaa ttgcgaaagt gggcttccaa ccgtcctgaa gtacttgaag      4320
     gtattccttg cgaaaatctg gcactaccag attcaaatgg cattgattgg gaccagaatg      4380
     cagaggtgaa ggcattgggc cttacgtggc ttcccaacgc agatcaattc cgtttcaaat      4440
     tcgaggtccc tcctataacg gaaaatcaga ttctcacgaa gcgaaaggtg ttgtgctaca      4500
     tagcaaggct tttcgacccg ttgggtttgc tgggagcgac gatcacatca gcaaaggtct      4560
     tcatgcaacg gctctggtgt ctgaagaatg aagcaggttg cattctccaa tgggacgacc      4620
     cactacccga aatggtgggt gaggaatggc gaacattcca taagcaaatt ccgatgttga      4680
     atgaaattcg ggttcctcga tgcgtagtta gtccaaattc agtatctgta gaatatcact      4740
     gcttctcgga tgcctcgata gttgcctacg gtgcgacaat ctacgttcga agtcagaggg      4800
     acgacggctc agtttcagta cacctgctca catcgaaatc aaaggtggca ccactcaagg      4860
     tgcaatctct accacggttg gaactatgcg gtgcgcttct ggtatcgcaa ctctgggaaa      4920
     aggtggcaga atcgctgaaa gcagaagaga aggttcactt ttggacggat tcgacctgtg      4980
     tgcttcactg gatcaattca ccaccaggaa catggacaac tttcgtcgca aacagagttg      5040
     cgaaaattca agggttgacg gaatctgatc aatggagaca cgttccagga aatactaacc      5100
     ctgctgacct gatttcgcgt ggggtttcgc caaccagcat cgtcggaaat gatatgtggt      5160
     ggcatggtcc tacctggctg ttggaaatcc ctgaaaaatg gcctaaaccc gtggaaaccc      5220
     acccagaaga ggaactggaa aggcgtcgca atgtggtggc gtgcactgcg tcgaaggagt      5280
     ctgggttcat ttcggattta gtagcaaaat tttcgtcgtt tattagattg attcggatga      5340
     cagcatactg gttgcgcttc ctgaacaact tacgatgttc agcaattgaa aaacagacag      5400
     gatatctttc cacgcatgag ctacaattag cggaacaaat gattgtccgc aaggttcagg      5460
     cggaatcgtt cgtggacgag atcggtaagc taacggctgg tggctcggtg gcacggaatt      5520
     cccctctacg atggttcaat cctcgaatcg acgaaaatgg tatcctacga gtcggtggtc      5580
     gattagctca ttccgaggaa tcgcaccaaa ccaaacatcc gatcgtccta ccggcaaggc      5640
     acgcactcac cgagttggtt ctccgtcatt ttcatcaaat ctaccttcac gctgggccac      5700
     aattgctcct agggacggtt cggcaacgtt actggccact cggtggcagg aatctagcga      5760
     agaagataat acatcagtgt cagcgatgct tcagggcaaa accatcaatc atgcagcaac      5820
     aaatgggaga attaccagca gctagagtca cagtttcaag accgttttcg aagtccggcg      5880
     ttgattactt cggacctgtg tatctgcggg ccggtcgagg acgcaaacca actaaagcgt      5940
     acgtcgcaat ctttgtgtgt atggctacga aagccgtcca tatggaacta gtgtcggacc      6000
     tttcaacaga gcgtttcctg caggcattgc gaaggttctt ttcacgccgg ggtcgttcca      6060
     cagacatcta ctccgataat gggacgaact tcgtgggagc gagaaatcaa atccaggagt      6120
     tgttcgagtt gctgaaaaac aaaacacatc gtgagacggt ttcgagagaa tgtgccaacg      6180
     aaggcatata ttggcatttc aaccctccga gtgctccaca tttcggaggt ttatgggaag      6240
     cagcggttcg gtcagcgaaa tttcatctgt taagagttct tggaggcaat tcagtatcgc      6300
     acgaagacct ttttactttg ttgacgcagg tggaaggatg cttgaattcg agaccattaa      6360
     catccatatc agacgatcca tcggatttag agccattgac tccagcccat ttcttgattg      6420
     gtggatcgct tcttgcctta cccgatccag atcttagcga tgttcaactt aatcgcttat      6480
     cacggtttaa agtcgtacag cggcagcttc aggatttctg gaaacgatgg cgtctcgaat      6540
     atctctctca acttcaggct cgatcaaaac attggcagcc agcagtagat gtgcaagttg      6600
     gaaggctggt tgttattgtc gattctaatc aaccacccac acagtggaag atgggccgaa      6660
     tagaggaatt acatccaggc gatgatggaa tcactcgagt agttacagtg cggacagcga      6720
     ctggaagttt gaaacgacca gtagtcaagt tgtgtttatt accaacgtta acggaagagg      6780
     attagggaag actctgaaga ttccaaccag tgcgtcgaga ggagattttc tttattttca      6840
     gaagttttcc tgcaacttca gggtgggtga gga                                   6873
//
ID   BEL-204_AA-LTR repbase;    DNA;    INV; 526 BP.
XX
AC   AAGE02024599;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-204_AA_;
KW   BEL-204_AA-I; BEL-204_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-526
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024599; Positions   16168   15643.
XX
SQ   Sequence 526 BP; 138 A; 91 C; 151 G; 146 T; 0 other;
     tgtctgcaag cagcttcagc atttctcgga tgaagtaatg atactcgtca cgttgaggga        60
     ctccagggat gctataaact ggtttgcgct actatggcta atacggttgt agtagtttac       120
     cggttcttag tactgcggac tctcggacta cctactacca ctaagcggac ggtcatcgat       180
     ggtcatcggg agccgagagt agcagagagt ttagttggta tccaaacgtc gtcgcgatca       240
     gaagcaaagg ggcgaaccct tgctcgtttt aatctgttag ccttagtgtc gtaattaata       300
     aagttaatgt agtgttttta tgtaagaata aagttgtgtt tcgtgtgtta ttatgtgtgt       360
     ttaactgcat gcgaaggaag gcataaggat gacgaggacc tgaagggatg aaggaacaag       420
     gacggccagg atcaaggatt tggattggat aaggactaag gaaggtacgt tctggtgaag       480
     gtcgagtgga ggtcaaattt catttcggtc ggacggttcc ccgaca                      526
//
ID   BEL-205_AA-I repbase;    DNA;    INV; 2392 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-205_AA_;
KW   BEL-205_AA-LTR; BEL-205_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2392
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 2164069 2161678.
XX
CC   'GAGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..2063
FT                 /product="BEL-205_AA-I_1p"
FT                 /translation="MGIKSQKVNQVGSCVEISRPNTNDNEWLINHSCTVVK
FT                 KATSKNNSAHIALRLKQLDEELAIQQREWDAERRAFEHDKRVLQIKYDLLQ
FT                 KHVAERTKASKGKKNSGVGEQNIAYNNTEGTLQSTNRIPPSEAFVNSSRKQ
FT                 QPVWKQTDLTRLNLPDDQLDEIQQRDISAFLYTAPNNPNLIANRSEEMNEH
FT                 NFTPIAHSTTTIGMPVRGKQTTNNVCNDQWSKKRSSVPANIESLYKLTLLA
FT                 DDVAALAKSERNELSLAPSVQHSTSKDCRSPSTFVAPIVPEPAPPPAQGDA
FT                 AFPFIDGFLDRSMFRSENITSISEELVKSLLLSSALQSAPTPKYSKAITKI
FT                 VNAGVQYFLGHVKAVEHLIQSQNMLMVMEFVTKLSIIVKMDLLSNKKTSNA
FT                 VHYRVLYFTELTKPRTAVWLNSTPNGNVMSLTLSQKKCAHVSCCLQAEMCL
FT                 VRCRQKKPVLPFDCDGGETSLMAVQWCENRGREQMKGQDDYWFTGIFVRRE
FT                 KSLGVCYSCPCWLEGSMKENGITNAVRMPQSTKIIAKMRTGMKTTTSITVP
FT                 RICVDGGILRVLMRGLSVVPGLCIEILSPDILVACRISIKPPISIGATYVG
FT                 IAVPLPAPVVSTNTADRDNGIDVEMLNKKDECPTPKLSSIILMIVSVQSVS
FT                 TIIPCKLVIPIQNEKAVRKRSRSGSRSFERL"
XX
SQ   Sequence 2392 BP; 765 A; 474 C; 564 G; 589 T; 0 other;
     taacttaaag ataatttgat gcgatgggaa tcaaatcgca gaaggtaaac caagtgggaa        60
     gctgcgtcga aatctcgcgc cccaatacga acgacaacga gtggttaatc aaccacagtt       120
     gcacagtagt caaaaaagca acatccaaga ataactctgc ccatattgcc ctgcgattaa       180
     agcagctaga tgaagaactc gctatccagc agcgcgaatg ggatgcagaa agaagagctt       240
     ttgagcatga taagagagtt ttgcagataa aatacgattt gctccaaaaa cacgtcgcgg       300
     agcgaacaaa agcttctaaa ggtaagaaga actctggcgt tggagagcag aatatcgcat       360
     acaataacac cgaaggcacc ttacagtcaa caaataggat ccctcctagt gaagcatttg       420
     taaacagttc gcggaaacaa cagccagtat ggaaacaaac agatctaacg agattgaact       480
     tgccagatga tcaactggat gagattcagc agcgagacat cagcgcgttt ctctatacag       540
     caccgaataa tccaaatttg atcgctaatc gaagtgaaga gatgaacgaa cacaacttta       600
     ctcctattgc gcattccact acgacaatag gtatgcccgt gcgaggtaaa caaacaacca       660
     acaatgtatg caacgaccaa tggtcgaaaa aacgatccag cgtgccagct aatattgaga       720
     gcctatacaa gcttactctt ctagcagatg acgttgctgc tttggctaaa tcagaacgga       780
     acgaactaag tttagcccca agcgtacagc acagtacaag taaagattgt cgttcgcctt       840
     ccacctttgt cgctcctata gtgcctgaac ctgcgccgcc ccctgcacag ggtgatgcag       900
     catttccctt catcgatgga tttttggatc ggtcaatgtt tcgcagtgag aatatcacca       960
     gtatatcgga agagctcgta aagtcgttat tattgtcgag tgcactacag tcagccccaa      1020
     cacccaaata cagcaaggcg attaccaaga ttgtgaatgc tggcgttcaa tatttcctcg      1080
     gacacgttaa agcggtggag catctgatcc agtcacaaaa catgttaatg gtgatggagt      1140
     ttgtgaccaa attgtcgatc atagtgaaaa tggatttatt atcaaacaag aaaacgtcca      1200
     acgcggtcca ttatcgtgta ctgtacttca cggagttaac gaaaccgagg acagcagtgt      1260
     ggttgaattc tacccctaac ggcaatgtga tgtctttgac gttgagtcag aagaagtgtg      1320
     ctcacgtgag ctgttgtctt caagctgaaa tgtgtctcgt acgatgtaga caaaagaagc      1380
     cagtattacc atttgattgt gatggaggtg aaaccagcct gatggctgtg cagtggtgtg      1440
     agaaccgagg cagagaacag atgaagggac aagacgatta ttggtttacc gggatattcg      1500
     taaggagaga aaagagtctt ggcgtttgtt attcgtgccc gtgctggctg gaaggtagta      1560
     tgaaggagaa tggaattacg aatgccgtga ggatgccaca atcgactaaa ataattgcca      1620
     agatgaggac cggaatgaaa acaacaacaa gtattacggt gccccgaata tgtgtagatg      1680
     gtggcattct acgagtgctc atgagaggac tttcagtcgt acccggtttg tgcattgaga      1740
     ttttgtcacc ggacatcttg gtagcctgtc gcataagtat taaacctcca atttcaatcg      1800
     gtgcaacata tgttggtata gcggtgccat tgcccgcccc agtggtaagt acaaatactg      1860
     ccgatagaga taacggaatt gatgtagaga tgttaaacaa aaaagacgaa tgtccaaccc      1920
     ctaaattatc atcgattata ttgatgatcg tttccgttca atctgtctcg acgataatcc      1980
     catgcaaatt agtgattcca attcaaaatg agaaagctgt taggaaacga agtcggtcag      2040
     gttctcgatc atttgaaaga ttatgaagac gttcaacagg agaaaaatat tggtttaaat      2100
     cacagagttg tggaacagta atatccggag caatataagc aacctttgag gtactgatcg      2160
     gttacgattt tcatcgcgtc ggcaatactg gtactccacg tttaagcaac aagattgcat      2220
     tagtcattca ggttctgact gttataacag ttgaaaaggt tgagttagaa ctagataaaa      2280
     aagtagaagg attctatcgg tcgctataag agattttttt tgcattagtt cagtagaagg      2340
     atagcaatac ggataatagt aaaactggtg gccagtgtta cgggggggag aa              2392
//
ID   BEL-205_AA-LTR repbase;    DNA;    INV; 535 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-205_AA_;
KW   BEL-205_AA-I; BEL-205_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-535
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 2161677 2161143.
XX
SQ   Sequence 535 BP; 201 A; 85 C; 91 G; 158 T; 0 other;
     tgttgctgcc aacactgccc agtgatgaca ttgcaattag gacggagaga tatgacagaa        60
     ttattaagag agaaatatac tgagcactag aatgaatagt agtgaggtgc aaagccatgc       120
     aagtttaatt tgagatagtg tgatttaata attgatctaa tttattgata tctataaatc       180
     tacttacagc tacttcttaa aatactaaaa tgaattaaaa tgaattaaac taaactaatt       240
     atcacagcag atatcacagt aagttagtaa aagctattga aatttaatat tctaacctag       300
     aagttataat ctcaggaaaa tacatgcaga tgttacgagt gaaatgaata gttatccaag       360
     attatgcctc aaaccaaatt atgtaagtaa cctataaaga aatgttcgta attgtaatcc       420
     taataattga ataaattcta gctttaagct gcttcgcacc cacacaacgg agtttgcgag       480
     ctgctctgaa gaatttggct gtgagccccg gaaaaccccc atttttaccg taaca            535
//
ID   BEL-206_AA-I repbase;    DNA;    INV; 5746 BP.
XX
AC   AAGE02024196;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-206_AA_;
KW   BEL-206_AA-LTR; BEL-206_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5746
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024196; Positions  134128  128383.
XX
CC   Positions [4594-5166] - Integrase core
CC   'ATGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           873..1877
FT                 /product="BEL-206_AA-I_3p"
FT                 /translation="MVAWNLLLDHYQNPVRLKQSYIDSLFEFAPIKRESAG
FT                 ELHSLVEKFEANVKILKQLGERTEFWDLILIRMLSIRLDAVTRRDWEEYCA
FT                 TQQAVTFQDLTTFIQRRVTVLQTIGKTNEVSTAIPAKKPGSRPIVSHGATQ
FT                 VNSRKCLVCSENHPLYQCPKFSKMSIEEKEKEIRRHQLCKNCLRKGHQARD
FT                 CSSSSTCRRCRGHHHTQICTQPETESFKPKSSEASPSPDNALQPSANHGQP
FT                 SPSISASIEISSHTSVGAKPRRVLLATAVVLVIDDTGREHPARALLDSGSE
FT                 CSFVTESFSQLIKARRRRVHLPISGIGQSTSTQHAFYYCPLKD"
FT   CDS           join(1849..2772,2776..5592)
FT                 /product="BEL-206_AA-I_1p"
FT                 /translation="MLFTTVRSRTSDYSAPVELLVMPKVTIDLPASSFDIS
FT                 TWKIPSEVQLADPAFYKMSPIDMVLGAELFFELFIMTGRIELGKNLPILVN
FT                 SVFGWVVTGRSTPSLISSPIAANLALVTDLHQLVEKFWSIEEDTTNSCPSV
FT                 EEAACEEHFQKTVHRNEEGRYIVRLPVRENILNDLDNNRRTATRRFRLLEA
FT                 RLARDQNLKAQYSLFMDEYLSLGHMERVQDYQQSPKRVYHLPHHAVIREDS
FT                 TTTKVRVVFDASCRTANGPSLNDALMVGPILQQDLRSILMRSRMHQVMIIA
FT                 DIKQMYRQILVDPRDTLQRIVWRSSMDAPLDTYKLKTVTYGTASAPFLATR
FT                 VLKQLADDECAEFPEATKVLTNDFYVDDLISGADSIDEAVNLRKQLELLLS
FT                 KGGFQLRKWASNEPDAVADVSADNLAMQPSVDLDRDQCIKTLGLHWEPQTD
FT                 RLRYKVQLPETLNGETLTKRLALSNIARLFDPLGLVGPVVTTAKLFMQSLW
FT                 LLQDNGKPWSWDKELPQSLQDSWQSYQNQLPLLNELRIDRLIICPSPTSVQ
FT                 LHIFSDSSEKAYGACAYLRSTDSNGLIKNALLTSKSKVAPLKQQSIPRLEL
FT                 CGALLAAELYKKISNSLPTSMQTFFWVDSTTVLNWLNRVSKIQLATKDCTW
FT                 NHIAGKENPADILSRGATPESLLNSTLWWRGPEWLQLESSEWPIEQHNDSQ
FT                 TSTTLREARKAPAPALNVHREPSFIDGLVAKFSNYQHMIRVTAYCKRFLRN
FT                 CRKRPRNLFVGNGAFLSSAEIRASEFTLIGLIQQQAFPVEWAQLSKKRPLA
FT                 TKSKLRWFNPFMSEEGVIRIGGRLTNAQQSFDSKHQILLPAHHSASRLLVK
FT                 QVHERNLHAHPQLLLTLLRNRYWIIGARSLARNVVHNCVACFRAYPKRVEQ
FT                 FMADLPSSRVTAVRPFAISGVDYWGPLLLRPATRRSAARKAYVAVFVCFCT
FT                 KAVHMELVVDLTTAKFMQAFRRFTSRRGFCSQIYSDNGRNFVGASNELRRL
FT                 LKSNEFRQAFAQECSNNAIEWHFNPPKASHFGGLWESAIASAQKHLIRVLG
FT                 PHKLDYDDMETLLIQIECCLNSRPIIPISDDPTDIQPLTPGHFLIGSPLKA
FT                 VPDVDVSAIPFNRLHRWQQTQKIFQDVWKRWSAEYLSSLQPRTKWCKAPVA
FT                 IETGRLVILLDENVPPMHWPTARITDVHPGPDGVTRVVTVRTSNGQYTRPV
FT                 SKICLLPLSSTTNSPTQEGDPDKSPSDISTTCNLREN"
XX
SQ   Sequence 5746 BP; 1606 A; 1495 C; 1235 G; 1410 T; 0 other;
     ttggtccttc gaaccgcatg gccgtcgaac tccggtcatt cgtcaaccct cgttaagcca        60
     tcatcgccta actacgcatc taagtcgaac cacgcaccac gatctggtga gaactgccac       120
     ttgtctcaac gataaccgac tctggaaccc gtattgttcg gtgcaacatt attccgtctc       180
     tccatctggc tgtcatttga attatacaag gcactcgtat tgcctttaac aggtaattat       240
     aattccattc attgttatcc attcctctcg ggctacgcgg tcttgcgctt tccagatcgc       300
     tgtcgcaata cgtcaccatg tcatcaacgg atcgacgcat caaatctctc aagacgaggc       360
     agaagagtct gctcacgtca ttccaactcg tcatgaagtt cgtgaacgga tagagcgaag       420
     aaaccgactg ccatgaagtt cctgtgagat tggaacacct tgttacgatc tggaatgatt       480
     tcaatgccgt ccaaggagag cttgaaacac tggatgacac caacgtggat acacatttgc       540
     aagatcgtat cgctttcgaa tcctcttact tcaaggctaa agggttcctt ctatcggtta       600
     ataaaacacc atccacgcca gccactccgt cgacttctca atcacaacca aactcttttt       660
     ccgccacgtc ccacgtacgg ctaccggaca tcaagctacc tgggtttgat ggtactctcg       720
     accgatggtt aaacttccat gacctctaca tctctttggt ccactcatcg agcgagcttt       780
     caaacataca aaaattttac tatcttcgct cttcactcac cggcgaagct ctaaagctgg       840
     tgcaaacgat cgcaatctct gccaacaact acatggtggc ctggaacctc cttctggacc       900
     actaccaaaa tcctgtacgg ctaaaacaat catacatcga ttcgctcttc gagtttgcgc       960
     cgattaaacg agaatcagct ggtgagcttc attcattagt cgaaaagttt gaagcaaatg      1020
     taaaaatact caagcagctc ggcgaaagga cagagttttg ggacctcatc ctcattcgaa      1080
     tgctgagtat tcgtctggac gccgttacac gaagagattg ggaagaatac tgcgccactc      1140
     agcaagctgt cacctttcag gaccttacca cgttcataca gcgtcgcgtt accgtcctgc      1200
     aaaccatcgg taagacaaat gaagtgtcta cagccattcc tgcaaagaaa ccgggttcac      1260
     ggccaattgt tagccacggt gccacgcaag tcaactccag gaagtgtcta gtgtgttcgg      1320
     aaaatcatcc attgtatcaa tgtcctaagt tttccaagat gagtattgaa gagaaggaaa      1380
     aggagatccg ccgacatcag ctgtgcaaaa attgcctgcg aaagggccat caggcaaggg      1440
     attgctcatc atcgagtacg tgtcggaggt gcagagggca tcatcacacg caaatctgta      1500
     cccaacccga aactgagtcg ttcaaaccca agtcttcaga agcatcaccg tcaccggaca      1560
     acgctcttca gccatcggcg aaccacggtc aaccttcgcc gtcgatctca gcatctatcg      1620
     aaatctcgag tcatacttct gtaggagcaa aaccaagaag agtacttcta gcaacagccg      1680
     ttgttctcgt aatcgatgat actggacggg aacatccagc tagggcgcta ctcgactccg      1740
     gtagcgaatg ttcttttgta acggaatcat tctctcaact gatcaaggca cgacgcagaa      1800
     gggttcatct acccatctcc ggtattggac aatcaacaag cacgcagcat gctttttact      1860
     actgtccgct caaggactag tgattattcc gccccggtag aactcctcgt catgcccaag      1920
     gtaaccattg acctgccagc atcatctttc gacatctcga cgtggaagat accatccgag      1980
     gttcagttag ccgaccctgc attctacaaa atgagcccta ttgatatggt cctaggcgca      2040
     gagctctttt tcgagctttt tatcatgaca ggcagaatcg agctcggtaa aaatttgcca      2100
     atcctcgtga attctgtttt tggatgggtg gtcacaggaa gaagcacacc cagtcttatt      2160
     tcctccccaa tagcagcaaa cttggcgtta gtcacagatc tgcatcagct ggtagagaag      2220
     ttttggtcga ttgaggaaga caccacaaat tcatgtccat cagttgaaga agcagcatgc      2280
     gaggaacatt tccaaaaaac ggtccatcgc aacgaagaag ggcgatacat cgttcgacta      2340
     ccggtgaggg aaaatattct caatgatcta gacaacaatc gacgcacagc cactcgacgt      2400
     ttccgtctgc tagaagctag acttgctaga gatcagaacc tgaaagctca atattcgttg      2460
     tttatggacg agtacctttc acttggtcac atggagcgtg tccaggatta ccaacaatca      2520
     cctaaaaggg tttaccatct tcctcaccac gcagtaatcc gcgaagatag caccacaact      2580
     aaagtgcgtg ttgtgtttga tgcctcctgt aggactgcga atggaccatc cttgaacgac      2640
     gccctaatgg ttgggccaat actacaacag gatcttcgtt cgattctcat gagatcacga      2700
     atgcatcagg taatgattat tgcggacatt aagcaaatgt acagacaaat tttagtcgac      2760
     ccccgggaca cttaactgca gaggattgtt tggagatcat caatggatgc ccctttggat      2820
     acgtacaaac taaaaaccgt aacgtacggt acagccagcg ccccatttct ggccacacgg      2880
     gtgttaaaac agctggcaga cgatgaatgt gcagaattcc cagaagcaac caaggttctg      2940
     accaacgatt tctatgtcga tgatttaatt tcgggagccg actcaataga tgaagctgtc      3000
     aaccttcgca agcaactaga attattatta agtaaaggag gttttcaatt acgcaaatgg      3060
     gcgtcaaatg aacccgacgc agttgcggat gtctctgcag ataatctcgc tatgcagcca      3120
     tctgtagatc ttgatcgaga ccagtgtata aaaacgcttg gtttacactg ggaaccacaa      3180
     acggatcgct tacgctacaa ggttcaactt cccgaaacac tgaatgggga aacgcttact      3240
     aagagactcg ccctctccaa catcgcccgt ctttttgatc cactgggttt ggtaggccca      3300
     gttgtgacca cggccaaact gtttatgcaa tcactatggt tacttcaaga caacgggaag      3360
     ccttggagtt gggacaaaga actcccacag tcacttcaag acagctggca atcctatcaa      3420
     aatcaacttc ctcttctcaa cgagctgcga atcgatcgtc taattatttg tccatcaccc      3480
     acgtccgtgc aattgcacat tttctctgac tcttctgaaa aggcgtacgg tgcgtgcgct      3540
     tacctgcgat ctacagactc gaacggattg ataaagaacg cactactcac ctctaaatcg      3600
     aaggttgccc cgctcaaaca gcagagcatc ccacgacttg agctctgtgg ggctcttctc      3660
     gctgcagaac tctataagaa aataagcaat tctttgccaa cttccatgca aacattcttc      3720
     tgggtggact ccaccaccgt attaaactgg ctgaacagag tatctaaaat acagttggcc      3780
     acaaaggatt gcacatggaa tcacatcgca ggaaaggaaa atccggcaga tattctttca      3840
     cgtggagcaa ctccagaatc gctacttaac agcactcttt ggtggagggg gcctgagtgg      3900
     ctgcagttgg aatcaagcga atggccaatc gaacaacaca acgattccca gacttctact      3960
     actcttcgag aagctcgaaa ggcacccgct ccagctctaa acgttcatcg agagccatct      4020
     ttcattgatg gtttagttgc aaaattttca aattatcagc acatgatacg cgtcaccgcc      4080
     tactgcaaac gttttcttcg aaactgccgt aaaagaccac gaaacctgtt tgtcggaaat      4140
     ggagcctttc tctcttctgc ggaaattaga gcttcggaat tcaccctcat aggactcata      4200
     caacaacaag catttccagt cgaatgggca caactgagca aaaaacgacc tcttgctact      4260
     aaatcaaaac ttcgttggtt caaccctttt atgtccgagg aaggagtaat ccgcattgga      4320
     ggacgactga ctaacgccca gcagtcattt gacagcaagc accaaatttt gctaccagct      4380
     catcattctg cctcgcgcct actggtcaaa caggttcacg aacgaaattt gcacgcacac      4440
     cctcagcttc tactcacgct tcttcgcaac cgatactgga taataggggc caggagtctg      4500
     gccaggaatg tggtccacaa ttgtgttgct tgcttcagag catacccgaa aagggtggaa      4560
     caattcatgg ccgatctacc ttcatctcgt gtgactgccg tgcgcccatt tgcaatatca      4620
     ggagtggact attggggacc attgcttctg cgaccagcaa ccagacgatc agcagcacga      4680
     aaggcttacg ttgcggtttt tgtatgtttt tgtacaaaag ccgtacatat ggagttggtc      4740
     gtagacttaa caacagcaaa gttcatgcag gcctttcgcc gattcacttc acgtcgagga      4800
     ttttgctccc aaatctacag tgataatggg agaaattttg ttggtgcctc taacgagctg      4860
     cgaagattac taaaaagcaa cgaattcagg caggcattcg ctcaagaatg ctccaacaac      4920
     gccatagaat ggcacttcaa tcctcccaag gcctcccatt tcgggggact atgggagtct      4980
     gccattgcat cagctcaaaa acatctgatc cgtgtcttgg ggccgcataa gctagattac      5040
     gacgatatgg agacgctact cattcaaata gaatgctgcc ttaattcgag acctattatc      5100
     ccgattagtg atgatccaac agatatccaa ccgctcacac cggggcactt ccttattgga      5160
     tcacccttga aagcagttcc agacgtggac gtgtcggcaa taccattcaa caggctccat      5220
     cgttggcaac aaactcaaaa aatctttcag gacgtgtgga aacgatggag tgccgagtat      5280
     ttatcatcac tgcagccccg cactaaatgg tgcaaagctc ctgttgccat cgaaacgggt      5340
     agattggtga ttctactcga cgaaaacgtt ccgccaatgc attggcctac agctcgaatc      5400
     actgatgttc accctggacc agacggagta accagagtgg tgacggttcg aacttccaac      5460
     gggcagtaca cacgacccgt atcaaaaatt tgcctgctgc cattgtcttc aaccacgaac      5520
     tctccaacgc aggaagggga tccagataaa tctccatcgg acatcagtac aacttgcaac      5580
     ctgcgggaaa actaaacaga aatattacaa ggcataataa tgcctggttc agttgctttt      5640
     cttcgagttc ttcgtgacat ttccatctgc caatgatcgt taagccgact gcgatgcgga      5700
     cggacaacct gtcaattcag aaaggagatt tctgaagggg ccagca                     5746
//
ID   BEL-206_AA-LTR repbase;    DNA;    INV; 437 BP.
XX
AC   AAGE02024196;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-206_AA_;
KW   BEL-206_AA-I; BEL-206_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-437
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024196; Positions  128382  127946.
XX
SQ   Sequence 437 BP; 124 A; 83 C; 103 G; 127 T; 0 other;
     tggtcgatgc acgaagcgat gcctgctcca tctaaacgtg gttttcgtcg ttcatcgata        60
     agggtatgcg cattagacga gatcgacata gtgtttaacg gtgcggtcaa ggataagcca       120
     tattgagcaa catggaggcg atgtaatttc cgtctactgt gactataaaa ggcctcacag       180
     acgtcacgtt gttctctttt tttgacatcg aacgccagca gaagaaacgt caatttataa       240
     tgttattgag tgaaatgaaa ttgaactgag taaatataag ttaagaagtt gaattaagaa       300
     agaagtgtag ttacttacca atcgtagtgg ttttaattag tgctgtcgcc gccggtgtta       360
     ctctgtgatc cgcaacctgc aaagaaagga gtacttacct gaagaatttc tccgctgccc       420
     tcgctgtgtt attgcca                                                      437
//
ID   BEL-207_AA-I repbase;    DNA;    INV; 6257 BP.
XX
AC   AAGE02025367;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-207_AA_;
KW   BEL-207_AA-LTR; BEL-207_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6257
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025367; Positions  100838  107094.
XX
CC   Positions [4949-5533] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           576..3812
FT                 /product="BEL-207_AA-I_2p"
FT                 /translation="MPDKKSEKKVADLQIVRKGLLVTCNGVEQFVKNFDED
FT                 RDSCQIPVRLESLDRVYRDFLKVQGEIEKYDAAEHLDEHLCERAAFETRYC
FT                 VAKGFLLSKRAVDLNQTMFDATVHHPPAAHGNFHLRLPQIDLPKFSGDFSK
FT                 WLSFRDTYTSMVHSNADIPTVAKLQYLIQSLEGEARKPFESVDIEADNYAA
FT                 VWDALLKRYDNRRFLKKQLFRSIYDLPTIKKESADNLHELVDEFQRHVKAL
FT                 AKLNEPVEHWDTPLVNLLSYKLDSSTLRAWEEKTSHQEDVQYNDLVEFLYQ
FT                 RVRIIKSVASDMSQRSQPVQAKVAGSNSSQRSQFSSKFVASAVSSDTKSNV
FT                 PSCFACSERHFLFQCQTFAKMPVSQRRELISQRKLCWNCFRTGHQARSCTS
FT                 KFSCRTCRDRHHTLLHDPSQVKSSSVPAATSKSHEAMSVPSTFATPGPSST
FT                 SQQVSMSVQSQVSTVLLQTVALHVIDVHGKSFEARALLDSGSMSNFMSTRL
FT                 ANLLAIPQSEADVSVAGIGQSHCKLKRAVNATVRSRIGTFSTKLQFLVIDH
FT                 PTANLPTIHVKISSWNLPKVDLADPQFHVPNKIDLVIGGEVYWDLHTGKKR
FT                 SLGPGLPYLIETHFGWTLCGSTSQDSSGSVACQLSTADALLDTTLQRFWEI
FT                 ETIPKQPVHSNSEKACEEFYAATTTRDEVGRYIVRLPRTDNPDIASGESDS
FT                 IAERRFLGLERRLDRDANVKSAYHQFMEEYERLGHMKRLDEPVNNAIPHCY
FT                 LPHHPVFKMSSTTTKTRVVFDASCKTTSGHSLNDILLVGPVVQDDLLSLVI
FT                 RFCFHRIALSGDIEKMYRQVRLHDDDQPYQRIKWRSDASEPIASYQLQTVT
FT                 YGTASAPYLATKTLQRLASDAGNNFPSAAEPVSKDFYVDDLLSGADDVDSA
FT                 IRIRREVSAMLDSAGLPMKKWASNSVEVLEDIPPEDRSVQPWQDLQDPQSV
FT                 STLGLIWEPGSDIFRFKVQLPLPASVLTKRKIMSYIAQIFDPLGLVGPTVT
FT                 KAKLFMQRLWALKTPNSERYEWDQPLPPKLQQEWKEFHTTIDLLREVRIPR
FT                 FASVVDAVSIQLHFFADASDKA"
FT   CDS           4319..5923
FT                 /product="BEL-207_AA-I_1p"
FT                 /translation="MTSVQITFAEELFSRYSKYSKLRRTIAWSLRYLQGLR
FT                 DRAIARRRNPTSLNESPKLSTHCQPLNSDELHSADRILCRLAQRESFPEEH
FT                 SDLSTGVLVSKSSPLKWLKAYVDEFGLIRVGGRLNNAELPENTKHPIVLSA
FT                 KHPLARLLTMHCHKTLLHAGPQLILASLRQRFWILGGRSLARNVYHQCITC
FT                 FRSKPKLIQQAIADLPASRVSPTRPFSVCGVDYCGPLFVKSPVRKRGPTKV
FT                 YVAIFICFSTRAVHVELVSDLTSAAFLAALRRLVARRGKISELHSDNATTF
FT                 KGASHALHRVYQMLKLDDTDRNRILSWCADNEIRWKFIPPRAPHFGGLWEA
FT                 AVKSAKTHLLKEIGNTSLSYEDMLTLLAQVEMCLNSRPLTPISSEPSDLEA
FT                 LTPGHFLVGSNLQSVPEATITDVSENRLDHFEQTQRHLQRIWARWYPEYLQ
FT                 QLQSRAVQGCKAPSGIEIGQLVVVKEDCLPPAQWPLGKIVKVHPGKDGIVR
FT                 VVTLKTASSDNVMRPVARIALLPIRTESSPSDTPVGEHQ"
XX
SQ   Sequence 6257 BP; 1520 A; 1771 C; 1504 G; 1462 T; 0 other;
     tttggtcctt cgagccggat cgaaggatac cccggttaga aggtacggtg tgtgctaaag        60
     tgcaagtttt ctggtccgag tgaccacctg aaagtcggca aggaggccgt gaaatttcgt       120
     cattggtggc tagtgattgc gccaagtgcg gtgtggaatt ctgtgcgcgc cagattccat       180
     ttgttcgacc aagtgaatag ccatcattcc attttgtggc tggtcattgt acgatccccg       240
     tggggaaaga atagtgtgtg gattggcgcc tagaaggtat tgtgactgag cgtggcttgg       300
     gtagaggcaa agtgtgctgt ttttaggctg gtcgaattgg ttgaagtgcg gcaaaaatta       360
     gaagtgtggt tgcaatttaa ttgcgtaaaa tactccttgt tggcggcaag ggagtggtga       420
     tagggagcca cagtgaccca agtcacagtg cttgcatcga tccgcgtcgt aatccgcgta       480
     atttcgtccg cgtcgggaag gagaaaatct ttgcgtccgc gtcgggaagg agcaaaaccg       540
     ttttcgtttc cgcgatcgtt tagatcggtg caaaaatgcc ggacaagaaa agtgagaaga       600
     aggtggccga tttgcaaatc gttcgaaagg gcctgttagt gacttgtaac ggcgtcgaac       660
     agttcgtgaa aaacttcgac gaagaccgtg atagttgcca gattccggtt cggcttgaat       720
     cactagaccg agtgtaccgg gactttttga aagtgcaagg tgaaattgag aagtacgatg       780
     cggctgaaca tttagacgag catttgtgtg aaagagccgc cttcgaaacc cgttattgtg       840
     tggcgaaagg ttttctgctg tccaaacgag cagtggacct caaccaaact atgttcgatg       900
     cgacggttca ccacccacca gctgcgcatg gcaacttcca cctccggttg ccacagatag       960
     atcttcccaa gttttccggg gatttctcga agtggctgtc ctttcgagac acctacacat      1020
     cgatggtgca ctcgaatgct gatattccca ccgttgcgaa actgcagtac ctgatccagt      1080
     ccctcgaagg cgaggcacgc aagccgttcg agagcgtaga catcgaggcc gacaactacg      1140
     ctgccgtgtg ggacgcccta ctgaaaaggt atgataaccg acgttttctt aaaaagcagc      1200
     ttttccgtag catttacgac ctcccgacga tcaagaagga gtccgctgac aacctccatg      1260
     agcttgttga cgagtttcag cgacatgtga aggccctcgc taagctgaat gagcccgtcg      1320
     agcattggga tacgcctcta gtgaatcttt tgtcctacaa gctcgattcc tcaactctcc      1380
     gtgcctggga ggaaaagaca agccatcaag aagacgtcca gtacaacgat ctcgtcgagt      1440
     ttctgtacca gcgggtacga atcatcaaat ccgtagcatc cgatatgtcg cagcgttccc      1500
     aaccggttca agcaaaggtg gccggcagta attcatccca gagaagccag ttttcctcca      1560
     agttcgtcgc tagtgcagtt tcatccgata ccaagtcgaa cgtcccatcc tgtttcgctt      1620
     gttccgagcg gcatttcctg ttccagtgcc aaacttttgc caagatgccc gtcagccaga      1680
     ggagagagct gatttcccaa agaaagctgt gttggaactg tttccgaacc ggtcaccagg      1740
     ccagaagttg cacatcaaaa ttctcctgcc gaacatgtcg cgatcggcac catacgttgc      1800
     tccacgatcc atcccaagtc aagagttcat cagtcccagc tgcaacatcg aaatcccatg      1860
     aagcgatgtc tgttccatcc acgtttgcta ctcccggacc gtcttccaca tcccaacaag      1920
     taagcatgtc ggtccaatcc caggtcagca ccgttctact acagacagtc gctcttcacg      1980
     tcatcgatgt tcatggcaag tctttcgaag ccagagctct actagattcc gggtcgatgt      2040
     cgaacttcat gtcgacaagg ttggccaatc tgcttgctat tccccagtcc gaagccgatg      2100
     tgtccgttgc aggaatcggc caatcccatt gtaagttgaa gcgagcagta aacgccacag      2160
     tccggtctcg aattggaaca ttctccacca aactccaatt cctcgtcatc gatcatccca      2220
     ctgccaattt gcccaccatc catgtcaaga tttcgtcgtg gaaccttccg aaagtcgatt      2280
     tagccgatcc gcagttccat gttccaaaca agatcgacct tgtcatcggc ggtgaagtat      2340
     actgggatct acacaccggt aaaaagcgtt ctttaggtcc aggtctaccc tatctcatcg      2400
     agacgcactt tggttggacc ttgtgtggtt cgacatccca agattccagt ggttcggtag      2460
     cctgccagtt gtctactgcc gatgccctgt tagacaccac ccttcagagg ttttgggaga      2520
     tcgagacgat tcccaaacaa ccagtgcact ccaattccga aaaggcttgc gaagagttct      2580
     acgctgcaac cacgaccaga gatgaagtag ggcgatatat tgttcgcctc cccagaaccg      2640
     acaacccgga tatcgcctca ggagagtcag attctattgc cgaacgccga ttccttggtt      2700
     tagaacgccg cctcgatcga gatgccaacg ttaaatccgc ctaccaccag ttcatggagg      2760
     aatacgagcg tctcgggcac atgaaacggc tcgacgaacc ggtcaacaat gcaatccctc      2820
     attgctatct gccgcaccac ccggtcttca agatgtcaag caccaccacg aagacaaggg      2880
     tagtatttga tgcctcgtgt aaaacgacat cgggtcattc cctcaacgac atcctccttg      2940
     ttgggccggt cgtgcaggac gacctgctgt cactcgtcat tcgtttctgc ttccaccgca      3000
     tcgccctgag tggcgatatc gagaagatgt accgtcaagt tcgcctccac gatgacgatc      3060
     aaccctacca gcgaataaaa tggcgaagtg atgcgtcgga acccatagct tcgtaccagt      3120
     tgcaaaccgt aacttacggt acggcctccg ccccctacct cgccaccaaa actctccaaa      3180
     gattggcgag tgatgcgggc aataattttc cctccgctgc agagccagtc tccaaggatt      3240
     tttatgtcga cgatttgctg tctggcgccg acgacgtcga tagtgccatc cgtattcgac      3300
     gtgaagtttc cgctatgctc gactctgcag gattaccaat gaagaagtgg gcttcgaact      3360
     ccgtcgaagt ccttgaagac atccctcccg aagaccgatc agtgcagcca tggcaagacc      3420
     tccaagatcc gcagtccgtt agcacacttg ggctcatttg ggaaccggga agcgacatat      3480
     tccgattcaa ggttcagtta cctctcccag cttccgttct caccaagcgt aagattatgt      3540
     cctacatagc tcaaatcttc gacccactag ggctagtagg accaaccgta acgaaggcga      3600
     agcttttcat gcaacgcttg tgggcattga aaactccaaa cagcgagcgt tacgaatggg      3660
     accaaccgct acctccgaag ctgcagcaag agtggaaaga gttccacact acaatcgatc      3720
     tcctccgtga agtgagaata ccacgatttg catctgtcgt cgacgcagtc agcatccagc      3780
     tccatttctt cgctgatgcg tctgataaag cctaggaacg tgttgctacg ttcgcgccca      3840
     atctgctcaa gaagtgtccg tgaaactcct agtgtcgaag tcgaaacttt cgcccctttc      3900
     agctcgccac actatagcaa gactggagct gtgcgcagcc catctatcca cgcagctgta      3960
     caagaaggtc gcttcgtcac tcagaaacgt cccgcctgcc tacttttggt cagattccac      4020
     caccgtgatc cagtggctcc gatcatcgcc cggacgttgg aaaacgttcg ttgcgaaccg      4080
     cgtgagccaa atccaatcaa gcacccccgt cgacaagtgg aaccacgtag caggttcgga      4140
     caaccctgca gatgatattt ctcgaggatt ggacccgtcc gatcttctca ccaaagccag      4200
     atggtggtct ggcccatcgt ggctgaagtt ttctccagat cattggccta ctggagcact      4260
     tcccgctgtt gaaccgccag aagtcgccca agagattcgc aaggctcccg tagtcgccat      4320
     gacctccgtc caaatcacgt tcgccgaaga gttgttctcc agatattcca agtattccaa      4380
     gctacgccgt actattgcat ggtccttacg ctatctccaa ggtctccgag accgtgcgat      4440
     cgcccgccgg cgtaatccaa caagcctgaa tgaatcgcca aagctatcaa cgcactgtca      4500
     gccactcaac tccgatgaac tccattccgc cgatcgaatc ctttgtcgtt tggcacagcg      4560
     ggaaagtttt cccgaagagc actccgatct ttccactggc gtgctcgtgt ccaagtccag      4620
     tccgttgaag tggttgaagg cctacgtcga cgagttcgga ttgattcgcg tcggtggacg      4680
     cctcaacaat gccgagctac ccgaaaacac caagcatccc atcgttctta gcgccaagca      4740
     tccgttggcc agattgctca ccatgcactg ccataaaact ctgctccacg ctggcccgca      4800
     gctcatactg gcaagccttc gccaaaggtt ctggatcctc ggtggacgaa gcctagctag      4860
     gaacgtctac caccagtgca tcacctgctt tcgaagcaaa ccgaaattga ttcagcaagc      4920
     catcgccgat cttccagctt cccgcgtttc tccgacgcgt cctttctccg tttgtggcgt      4980
     agattactgc ggcccactgt ttgtcaagtc accagttagg aagcgtggtc caacaaaggt      5040
     gtatgtggcc atcttcattt gtttttccac acgggccgtc cacgtagagc tcgtgagcga      5100
     tttgacatca gctgcgtttc ttgccgcact gcgccgcctg gttgctcgaa ggggtaagat      5160
     ttccgagctc cactccgata atgccaccac tttcaaggga gcatcgcatg cccttcatcg      5220
     agtgtaccag atgctgaagc tggatgacac ggaccgaaac cgaatcctct catggtgcgc      5280
     agacaacgag atccgctgga agttcatccc accgcgcgcc cctcattttg gaggtctctg      5340
     ggaggctgcg gtgaagtccg caaagaccca cctcctgaag gaaatcggca atactagttt      5400
     gtcatacgag gacatgctca ctctactcgc acaggtggaa atgtgcctca attcacgccc      5460
     acttacacca atatcgtcgg aaccatcaga cttggaagcc ctgacacctg gtcacttcct      5520
     ggtgggatcc aatctccaat cagtacccga agcaacaatc accgatgtct ccgaaaaccg      5580
     gctcgaccat ttcgagcaaa cccagcgcca tctccaaaga atctgggcac gatggtaccc      5640
     agaataccta cagcagttgc agtccagggc tgttcaaggc tgcaaagctc caagtggcat      5700
     cgaaattgga caactcgtcg tggtcaaaga agactgcctc ccgcccgctc agtggcccct      5760
     cggcaaaatc gtcaaggtcc acccagggaa ggacggcatc gtcagagtgg tcacgttgaa      5820
     gactgcttct tcagacaacg tcatgcggcc cgttgcacgg attgccctgc tgcccatcag      5880
     aaccgaatca agtccgtccg acacccccgt cggagaacat cagtagagca gtactgaact      5940
     agctcgaggc gcatatcatt ttaaatcagg taattaacgt tccaatcacc ctaatccacc      6000
     cgaatgatct acctggtctt tttttgtttt cggacgtcaa caacgaggtc aacgcactct      6060
     atttctgtct actgtctgca catcccaaga ccatatcagc caagttcgat cttcggccct      6120
     cgcccaatcg gtcttctgat cgacgatgtc aacagagagt cgaactgatc ctctccaatc      6180
     tcgaacgagc agatgcagaa gtgttagtgt ataagacaga agtttgttga aataggctat      6240
     ttcaaaggtg gccggaa                                                     6257
//
ID   BEL-207_AA-LTR repbase;    DNA;    INV; 558 BP.
XX
AC   AAGE02025367;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-207_AA_;
KW   BEL-207_AA-I; BEL-207_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-558
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025367; Positions  100280  100837.
XX
SQ   Sequence 558 BP; 161 A; 138 C; 120 G; 139 T; 0 other;
     tgtagaagat ccatatgaaa tacttaatcc cgatcctatc aaccaaactc aatttgtgtc        60
     accctaatgc cttatcaatg tatttcttat atactcacta cccagttagt tcgagcgagc       120
     gagatgtaga gatacgagag aaagtagggt cactcacaat gaccactaga aaggtacatg       180
     taattagccg agcgatcagg gtcatcgatc gctctgatca atatttagtt cagttagttc       240
     aatccaaccg ctcaacccga taggttgata atatacggcc gtgcgcgtaa aaccctaaac       300
     acgaatcgtt ctaacgagtc cgaaacgtta agtgcttgtc cgcgactttg attacaaggt       360
     gggaaagcag atcccggttc ggtgtccgta ttgcgccaag tgatagtgct aaacttgtgc       420
     tctggtgaaa gagcaaagct agcgaagaag ttcccccctc ccccaatcgt agccacaccg       480
     ctggccttcc taattgccgt tgcgataacg gcgaagaaaa cccttcgatt cagcgtatac       540
     agccgattgg ctcgtaca                                                     558
//
ID   BEL-208_AA-I repbase;    DNA;    INV; 5528 BP.
XX
AC   AAGE02026623;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-208_AA_;
KW   BEL-208_AA-LTR; BEL-208_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5528
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026623; Positions   33548   39075.
XX
CC   Positions [4562-5146] - Integrase core
CC   'TCAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           236..5281
FT                 /product="BEL-208_AA-I_1p"
FT                 /translation="MPPKRTPVKNMEGGGGTAAAGGEDEVEEFDALVHMRG
FT                 LAKGKLTRVKNIMEQIVQEEITLPQIKVHQKKIEAAYKEFSDYHERIMAVC
FT                 PPSKRRDQDCKYLEFETLYDDISLALETWIEMLNQTQRNQQPLVVQPSLPR
FT                 AIPHFDGKYEQWEKFKVMFRDVVDRSNEPPRIKLYHLEKALIGDAAGIIDA
FT                 KTISDGNYDHAWEILAERFEDQRRMVDHHISGLLNMKKIAQESHSELRELV
FT                 DSCVGHVENLKYLGQEFTGVSDQIVTHLLANALDDETKKLWESSITHGELP
FT                 EYDETVKFLKGRISVLERCQKSTNDSKVKQSARGSSKGAQVSGKQPSNVKV
FT                 NVVSSSNSCEFCAGDHLAFKCSVFNGLSVEDRLKMVREKLVCFNCLRRGHR
FT                 GAECKSNKTCSKCKRKHHTLLHAEGGSVQSSGSSNATPTEQQQAPRQVTQP
FT                 ENVSVAGSRPPTTVASNVVDKPMTQVLLLTAMVNILDKHGNPQACRALLDS
FT                 GSQVNFISEAMLEKLKVDREEINIPITGVNSVRSSVRQRAKVEVLSKNNGF
FT                 RLNLDCLVSPKVTGNLPTFEVDVASWNIPTGIQLADPVFFRPGQVDLLIGM
FT                 EWYDDVIKPGRLKLSEDLPTLQDSQFGWLVGGKCASAFSGISVTSHAATPS
FT                 NDSLNELMQKFWEVESVASEHCEKSDAEKCELHFQSTFRRSEDGRYIVQFP
FT                 LRESVAQLGDSKPMALRRFHALEAKLQKNPDIKKQYDEFMDEYEQLGHCKE
FT                 VQEADDPPGLQKWYLPHHAVLKPSNSTTKCRVVFDASAKVGGMALNDAMMI
FT                 GPTIQPDLLTIILKFRMFRYVLSADIAKMYRQVLKDKCHTPLQRIFYRKHP
FT                 KEPLRVLELQTVTYGTASAPFLAIRALYQLAIDEEDRYPRAAELVKKMFYV
FT                 DNVLFGGNNMEEVRSLQRELIELLSRGGFHLHKWAANNEQLLDSIPLEDRD
FT                 KLVKIEDSGANEVIKTLGLMWDPNGDDFLFRAQYDCDNPAPTKRQVLSVIA
FT                 RLFDPLGLLSPVIVLAKVLMQNLWKHKMDWDDKLDGDLLKDWKYFLKALPL
FT                 AEDFRVPRQVISSDAASIDIHGFADASNTAYGACVYLRSVNHDGSASLKLV
FT                 TSKSKVCSITPMSIPRKELMAALLLHRLVKKVINAMELEHVPVTLWSDSQV
FT                 VIAWLNKPLDSLQIFVRNRVAEIKGDNDQRVWKYVRSANNPADIVSRGMPA
FT                 TALSTNNLWWNGPTFLCDAAYEEVVPEALDDEAIPELKPLKSVNVATIIEE
FT                 LPILTKFESFRKTQRIIAYVLRFINNCRKSGERITAMKPMVPELREATKRI
FT                 IQAIQRTELQDEIDRLAAGETCKRIGNLNPFLEDGLLRVGGRIRHSKIPYE
FT                 AKHQWIIPNKHPVTRRIIAAVHRENLHAGPSSVMAALRERYWILNAKSTIR
FT                 SVTRNCITCFKSNPKLAEQFMGDLPSYRITAAPTFLRVGVDFAGPIYIKQT
FT                 ARKAAPVKGYICVFVCMVSKAMHLEVVENLSTEAFLAALQRFVSRRGVPEE
FT                 VYSDNGTNFMGARSELHELYELFKSDLTNGKLSQFCQVKEIKWTTIPPNAP
FT                 HFGGLWEAGVKSVKSVLKKVYRSASLTIMEFATLLCQIEAILNSRPLFAHS
FT                 SDPNDPNVLTPGHFIINRPLTKPTIKVAAHSTSSTAFLETLVERVFGRASM
FT                 SFKMDEEARQCSP"
XX
SQ   Sequence 5528 BP; 1605 A; 1199 C; 1382 G; 1342 T; 0 other;
     tgttttggtc cgatcgaacc ggatagctcg gtttatgtgc atcgcttgct ggaacgtaat        60
     gcggctggtt ggaccgtgga gtggctggct cggcgacaaa acacacacac gccgcgaagt       120
     gaaaagtgga aaagcaaaac gtaaatcaaa aactgagtga acattggaca tttgaaaaaa       180
     gtgaagtgat taactgctaa agaacattgg aataaaaagt gattagtgaa gaaacatgcc       240
     gccgaagcgt acacctgtga agaatatgga aggtggtggt ggcacggccg ccgccggtgg       300
     cgaagatgaa gtggaagaat tcgacgcgct ggtccacatg cgtggattgg caaaaggaaa       360
     gctcacgcgt gtgaaaaaca tcatggagca aatcgtgcaa gaggaaatta cgctgccaca       420
     aatcaaggtg caccagaaaa aaatcgaagc tgcctacaag gagttttcgg actaccatga       480
     acgcatcatg gcggtctgcc caccaagtaa gcgaagggat caagactgta agtaccttga       540
     atttgaaaca ttgtacgacg atatttccct cgctctcgaa acatggatcg agatgctgaa       600
     tcaaacgcaa cgcaatcagc aaccgcttgt ggtgcaaccg tcgcttcctc gtgccattcc       660
     gcatttcgat ggcaaatacg agcagtggga aaaattcaaa gttatgttta gggacgtggt       720
     ggacagatct aatgagccac cccgaattaa gctctaccat ttggaaaagg cactcattgg       780
     ggacgctgct ggcataattg atgcaaaaac catctccgat ggcaattatg accatgcatg       840
     ggaaatttta gcagaaaggt ttgaagacca gagacgaatg gttgatcatc acatctctgg       900
     attactaaac atgaagaaaa tagcgcaaga aagccactct gagttacgag agttagttga       960
     ttcatgtgtt ggccatgtcg aaaatttgaa atatttgggt caagaattta ctggggtttc      1020
     agatcaaatc gtcacacatc tcctcgcaaa tgcgcttgat gacgaaacga aaaagttatg      1080
     ggaatcttct atcactcatg gggaattacc ggaatatgac gaaactgtca aatttctgaa      1140
     aggtcgcatt tccgtactcg aacgttgtca aaagtccact aatgatagca aggtcaagca      1200
     atccgcgcgt ggttcaagca aaggagctca agtgtccggt aagcagccat cgaacgtgaa      1260
     agtgaatgtg gtgtcatcgt cgaacagttg tgagttttgt gcaggagatc atctggcgtt      1320
     caagtgctct gtgttcaatg gattatcagt cgaagatcga ttgaaaatgg tgcgtgaaaa      1380
     actggtgtgc ttcaactgtt tgcgacgtgg tcatcgtggt gcagaatgca agtcgaacaa      1440
     gacgtgttca aagtgtaaga gaaagcacca tacgttactc catgcagaag gtggttcagt      1500
     gcaaagttcc ggttcaagta atgccacgcc gacagagcag caacaagcac cgagacaagt      1560
     gactcagcct gaaaacgtaa gtgtagctgg tagccgccct cctactaccg tagcttcgaa      1620
     tgtggtcgac aaaccaatga cgcaggtgct gttgttgact gcaatggtta acattttgga      1680
     taagcatgga aacccgcaag catgccgtgc tcttttggac agcggatcgc aggtcaactt      1740
     tatttcggag gcgatgttgg agaaactgaa ggtggatcgg gaagaaatca atattcctat      1800
     caccggagtc aacagcgtca gatcaagtgt tcgtcagcgg gcaaaggttg aagttctttc      1860
     gaagaataat ggcttcaggc ttaacttgga ttgcttggtg tcgccgaagg taacgggaaa      1920
     tttacccacc tttgaggttg atgtcgcttc atggaatatc ccaaccggta ttcagctagc      1980
     agatccagtg ttctttcgcc cagggcaagt tgatttgctg attggaatgg aatggtatga      2040
     cgacgttatc aagcctggtc gtctaaaact atctgaagac cttcccacac ttcaggattc      2100
     gcagtttggc tggttggtcg gtggaaagtg tgctagtgcg tttagtggaa tcagtgtaac      2160
     ttctcatgca gcaacaccgt caaatgattc gctgaatgaa ctgatgcaga agttttggga      2220
     agttgaaagc gtggccagcg aacattgtga gaagtccgat gctgaaaagt gtgaactgca      2280
     tttccagtct acgtttcgtc ggagtgagga tggtcgttac atcgtacagt ttccattaag      2340
     ggaatctgtt gctcagcttg gagattcgaa accaatggcc cttagaagat tccatgctct      2400
     ggaagcgaaa ctgcagaaga accccgacat caagaaacaa tatgatgagt tcatggacga      2460
     atacgagcag cttggacatt gcaaagaggt tcaagaagcg gatgatcctc ctggtttgca      2520
     gaaatggtat ttaccgcatc acgcggtgct caagccgtcg aattcgacta ccaaatgtcg      2580
     tgtagtgttc gacgcgtcag cgaaggttgg cggaatggcc ttgaacgatg cgatgatgat      2640
     tggccctaca attcaacctg atttgctgac gatcattttg aagtttcgca tgtttcgata      2700
     tgtgctaagc gccgacattg ctaaaatgta tcggcaagtg ctgaaagaca aatgccatac      2760
     tccgctacag cgcatattct acaggaaaca tcccaaagag ccgttacgag ttttggaact      2820
     tcagacggta acatacggga cagcgtcagc cccgtttctg gctattcgcg cgctctacca      2880
     actggccatt gacgaggaag atagatatcc acgagcagcg gaattggtga agaaaatgtt      2940
     ctatgtggac aacgtgctat ttggtggtaa caacatggaa gaagtgagaa gcctccaacg      3000
     agaattgatc gagcttctga gccgcggggg tttccaccta cacaaatggg cagcaaacaa      3060
     cgagcaactc ttggactcta ttccattgga ggatcgagat aaattggtga agattgaaga      3120
     ttctggtgca aacgaggtaa tcaagaccct tggattgatg tgggatccaa atggagatga      3180
     ttttctgttc cgagcacaat atgactgcga caaccctgct ccaacgaagc gacaagttct      3240
     gtctgtgatt gcaagactat ttgatccact aggcttgcta tcgcctgtca tcgtccttgc      3300
     caaggtcttg atgcagaacc tatggaagca taagatggac tgggacgata aactggatgg      3360
     agacctactc aaggattgga aatacttctt gaaagcactg ccacttgccg aagacttcag      3420
     agttcctcga caagtaatat caagtgacgc tgcaagcatt gacatccacg gatttgctga      3480
     tgcatcgaac acggcttacg gagcatgtgt ctacctacga tcggtgaatc acgatggcag      3540
     tgcgagtttg aaactggtta cgagcaagtc aaaagtgtgt tccattacgc ccatgtctat      3600
     tccgcggaag gagctgatgg cagccctact tctgcatcgc ttagtaaaga aggtgatcaa      3660
     cgcaatggag ttagaacatg tcccagttac tctctggtct gacagccagg tggttattgc      3720
     gtggttaaat aagccgttgg attctttgca aatattcgta agaaatcgag ttgccgaaat      3780
     caaaggtgac aacgatcaac gtgtttggaa gtacgtccga tctgcaaata atcccgcaga      3840
     cattgtgtct cgtggtatgc cagctacagc tctttcaaca aacaacctgt ggtggaacgg      3900
     tcctactttt ctgtgcgatg cagcatatga agaagttgtt cctgaagcgt tggacgatga      3960
     agcaatccct gaattgaagc cactgaaatc tgtcaacgta gcaactataa ttgaagagct      4020
     tccgatcttg accaaatttg aatcatttag gaagacgcag aggatcattg cctacgtttt      4080
     gaggttcatc aacaactgcc ggaagagtgg tgaacgaatc actgcaatga agccaatggt      4140
     tcctgagtta agagaagcta caaaacgtat catccaagcc atccaaagaa ccgaacttca      4200
     agatgaaatc gatcgccttg cagccggcga aacatgtaag cgaatcggca atctgaaccc      4260
     cttcttggag gacggattac ttcgagttgg aggtagaatt cgtcacagca aaattccata      4320
     cgaagcgaag caccaatgga tcatcccgaa caagcaccct gtaacaagaa gaataattgc      4380
     tgctgtacac agggagaact tacatgcagg accgagtagc gtgatggcgg ccttacgaga      4440
     acgctattgg attttgaacg ccaaatcaac gatacgaagt gtaaccagaa actgcatcac      4500
     ctgctttaag tcgaacccga agcttgcaga acaattcatg ggagatttgc cctcgtatcg      4560
     catcaccgct gcacctacgt tcttgagagt tggagtagat tttgctggac ccatctacat      4620
     taagcaaacc gctaggaaag cagctccagt gaaaggctac atttgtgtat ttgtctgtat      4680
     ggtatcgaag gcaatgcact tggaggtggt ggaaaaccta tccactgagg catttttggc      4740
     tgcactacaa cgattcgttt cgagaagagg agttccagag gaggtttaca gcgacaatgg      4800
     aacgaatttc atgggcgcga gatccgagct ccacgagtta tacgagctct tcaagtctga      4860
     cctaaccaat ggaaagctat cacaattctg tcaagtcaag gagattaagt ggaccacgat      4920
     tccccctaac gcacctcatt ttggaggatt atgggaggca ggtgttaaga gtgttaaatc      4980
     tgtgctcaag aaagtctatc gttccgcctc tctgacaatt atggaatttg cgaccttact      5040
     ttgccaaatt gaggccattc tcaattcgag accccttttt gcgcattcct ctgaccccaa      5100
     tgacccaaat gttctgaccc caggccattt cattatcaat agacctttga ctaaaccgac      5160
     tatcaaagtg gcagcacatt caacttcttc gacagcattt ttggaaacgc tggtcgaaag      5220
     agtatttggt agagcttcaa tgtcgttcaa aatggacgaa gaagcacgtc aatgtagtcc      5280
     ctaacaccgt cgtgctattg aaagaagaca acgtgccacc ccaacagtgg aaattgggta      5340
     aaatcgtcaa cacttaccca ggtcccgatg atcttactcg agtcgttgat gtccgtgtcg      5400
     gtagcagtat cttcaagcgg ccaatccaca aattggcgcc cctacctaca ctagagggag      5460
     atccagcaca ttcatcagaa gcgaatccca aggaatcaac agtgtcactc ctttcccggg      5520
     tggcagca                                                               5528
//
ID   BEL-208_AA-LTR repbase;    DNA;    INV; 467 BP.
XX
AC   AAGE02026623;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-208_AA_;
KW   BEL-208_AA-I; BEL-208_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-467
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026623; Positions   33081   33547.
XX
SQ   Sequence 467 BP; 138 A; 103 C; 129 G; 97 T; 0 other;
     tgttcagtcc gcagcgcagc gaactgaaga agaagcgcat gcaacggaag ccccgcccaa        60
     caggaaaacg atcgtcatcg tacgcattcg ttgcgtaaca aacaaatata aatatgctct       120
     acctgctagg gcgagcatca gttttgtgac gcaactcgga gagagcagat agcagcagcg       180
     agaagaaagg caaacgtgaa aaggggagaa gtcgagccgg agagccgaga ccggccgaag       240
     aaagtgtgtg gaagaatgta gtaaagtgaa taagtaaaat gaattagaag aagaaagctt       300
     gtgtgtgtcg ttttgttttc gagccgaaat ttccgtggtc cgccagtcgc ctgcgtttcc       360
     accacagtcc ttgtcaggac tagttgctag ggaaaatatt cacttcgctt ggtcatcgct       420
     ggtccgttgg tgcagcagtt tacagtccac tgcaacacgt cgcaaca                     467
//
ID   BEL-209_AA-I repbase;    DNA;    INV; 6903 BP.
XX
AC   AAGE02017349;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-209_AA_;
KW   BEL-209_AA-LTR; BEL-209_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6903
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017349; Positions   41646   34744.
XX
CC   Positions [5956-6513] - Integrase core
CC   'GACGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..6903
FT                 /product="BEL-209_AA-I_1p"
FT                 /translation="MSSQANVRQTRSQTRAQQANANPPISGDDGDRMSDRS
FT                 SEDSFIPSIVDSGRGESRECAGCDRPNNAEKYMVECQKCNSWYHFSCANVN
FT                 TVTVRSTSFVCTACMRSEISVALGSARSQISVISSSSSARAARMARELQRL
FT                 DEEKKVMEELSRERIERERALNERELQERMEREKQFIARKHELLNRQDDGE
FT                 GRSVRSMRSSQRSTQRTEDWVKQTASEAVGPSSTPVDAEDTSLGYPQGVHP
FT                 SSTPLKIVDAVFPTAVDDDLKDTGSEVKSIPEALGSLPIADASEEPIEGIG
FT                 KMDDAGVRNQPGLPTVDVKPYSDLLKLDEVVPAGVFSKVKRVNPSTYQRWS
FT                 VETGELRQQNAKVIQQQQQMEVEQRNMHELVRKLQFDIGTGRKREQDLQSQ
FT                 LKSLQIHHAEELRVIHNSETGLQNQLRQLQCENASLRNQIASLNGELQQIS
FT                 TSREKLQVLLKEREDGITSKESQIRTLQMEVVEAAEQMRNLEADLREQLNR
FT                 HKHECDTLELQRAELENEIQGLRTTEQQLQKEMEACLQREREAIRERNTAE
FT                 QEYWDLHDVVQQFVNRNQHWASEGDCSPHLPPPPAAWLDQAANEDCLNPLP
FT                 PPPPHLSNSAYNCLPVMSGGGIPLVPPFAIGHVGPSAHQIAARQVVTKELP
FT                 VFSGDPIDWPLFISSYQHSTEACGYSNAENLLRLQRSLKGSAKESVSSFLL
FT                 HPSTVPQVMSTLQQLYGRPEQIVNNMIAKVRATPPPKPDRLETLVSFGLAV
FT                 QNLCGHLKAVGLERHLANPILLQELVDKLPATVKFNWALHQEQVPEVDLNV
FT                 FSAYMAKISSAASSVTQLTAVSQKVKDERIRPKDRSFVNTHVSADPPKTSR
FT                 EEEPRTATERTRGKQKDGAAGTIGSKKCAICNVDNHQIENCASFKALDLDG
FT                 KWKAVKVNKLCGRCLTSHANWPCKGEICGINSCPKRHHRLLHFDPPETAKT
FT                 NSAVVTVHRQISSSTLFRILPVTLFGKNGQFDTYAFLDDGSSVTLVERSIA
FT                 EALGVQGKVETLRIEWTGGVNKTITGAEVVTMEISETGGSKRYRLSEVYTV
FT                 DNLGLPQQTTDYAELATRFAHLDKLPVKSFRSAVPGILIGQSNCHLLATLK
FT                 LREGRLNEPIATKTRIGWAVCGSLRRSQAVTMQTQLHMYAEPSTVDLHEYV
FT                 RRFFEVESLGVAVVPEVKGVEEERAYKILDETTRRTSTGKFEIGLLWKHDY
FT                 IEFPESKPMAERRFKCLEKRLSRNPELYNSVRQQIADFTAKGYIHEATVEE
FT                 IEGFDLRRTWYMPIGVVVNEKKPGKVRVIWDAAAKVDGVSLNSLLLKGPDL
FT                 LTSLLSVLFAYREREVAVSADVKEMFLQMLVREQDRSALLFPYRDSPELPM
FT                 TTMVSDVAIFGAACSPAHSQYVKNLNATEQEAELPRGAEAVKKRHYVDDYV
FT                 DSFDTAEEAFEVAKEVIEVHKRAGFHIRNWMSSDRSVLEKLDEANVKPSKA
FT                 MLPDKDVGCERVLGMAWIQQKDEFVFSLQFCEKVRILLDGDAIPTKREMLR
FT                 LVMSLYDPLGLVASFVIHGKILIQEVWRTETDWDSNIPGEIATRWMEWLTV
FT                 LKSMTGLRIPRCYFSGYEPSSYNNLELHVFVDASAQAYAAVAYFRIVDRGQ
FT                 IRVALVSSKTKVAPLRGLSIPRLELMAALLGARLRRTIENNHRLKVTKTCF
FT                 WSDSSTVCSWIKSDSRRYRQFVAFRVDEILSLSNIDEWKWISTRINVADEA
FT                 TKWGKGPSCNVDSRWFRGPDFLYEREEGWSMKPEEEELEDESDGELRAAVV
FT                 CSHLVVQPVVDTERFSKFERLRNSTAYVYHFINNLRSSWIESAGTIGVTSK
FT                 ELQIAENFLWRMAQSEAFPEEVATLKREQDEKNSLRKRLPTSSELVKLSPF
FT                 VDDHGVLRVESRAANAQVLAYDTKFPIILPRKHRITELLLDSYHRKYGHAN
FT                 DETVVNEVRQKFHIPRLRVEVRQIRKRCMWCRVYKATPVAPKMGPLPAVRL
FT                 EPFVRPFTYVGIDIFGPYSVKLGRSSVKRWVCLFTCLTIRAVHLEVVASLT
FT                 TDACKKAIRRFIARRGSPQEIYSDNGTNFVGASRELQQETSRIHTELGSTF
FT                 TNAQTQWKFNPPAAPHMGGCWERMVRAVKSALGSIPIVRKLDDESFATVLA
FT                 EAESMVNSRPLTFIPLETADQESLTPNHFLLLSSNGVREPEKFPTDEVKAL
FT                 RSSWNLVKHTLDNFWRRWVVEYLPTIIRRTKWFQDVRPITIGDLVLVVDEN
FT                 IRNRWLRGRVIGTIPGKDGVARRAEVKTSAGILNRPCTKLAVLNVEGSGDA
FT                 QPEAKATRGGG"
XX
SQ   Sequence 6903 BP; 1887 A; 1555 C; 1972 G; 1489 T; 0 other;
     tttctcaaag aatttatccg gagtaggatg agttcgcaag caaatgttcg ccaaacccgc        60
     tcgcagacaa gggctcagca ggcgaatgcg aatcccccca tctcgggcga cgacggcgat       120
     cggatgtcag atcgatcatc ggaagattct ttcatccctt caatcgttga tagcggcagg       180
     ggtgagtctc gggaatgtgc tggttgtgac cggcccaata acgcagagaa gtatatggtg       240
     gaatgccaga agtgtaacag ctggtatcac ttctcttgtg cgaacgttaa cactgttaca       300
     gtacgttcca ctagcttcgt ttgtactgct tgtatgcgaa gcgagatttc ggtcgcgttg       360
     gggtcggcaa ggagccaaat cagtgtaatt tctagctcat ctagtgctcg ggcggctaga       420
     atggctcgag aactgcagcg tctcgacgag gagaagaaag tgatggaaga attaagtcga       480
     gagaggatcg agagggaacg ggccctgaat gaacgggagc ttcaggaaag aatggagcgt       540
     gaaaagcagt tcatcgctcg aaaacacgag ctgctgaatc gacaggacga tggagaaggg       600
     agaagtgtac gcagtatgcg gagcagccag aggagtacgc aacggacgga agattgggtg       660
     aagcagacgg cgagtgaagc tgtcgggccg agttcgacgc ccgtggatgc ggaggataca       720
     agtctgggat atccgcaggg agtacatccc tcttcaacgc cactgaagat tgttgatgcc       780
     gtgtttccta cggccgttga cgacgacttg aaagatacgg gatcagaggt aaaatctatc       840
     ccagaagctt tgggaagctt gcctattgcc gacgcgtcag aggaaccgat tgaaggaatc       900
     ggtaaaatgg atgacgcggg cgtacgaaac cagccaggtt tgcctaccgt cgatgttaaa       960
     ccgtattcag atctactgaa gctcgatgaa gtagtgccgg ccggtgtgtt ttcgaaggta      1020
     aaacgtgtga atccaagtac ataccagcgg tggagtgtcg aaaccggcga actacgacag      1080
     caaaatgcta aggttatcca gcaacaacag caaatggaag tggaacagcg gaacatgcat      1140
     gagttggtgc ggaaactcca gttcgacatc ggtacgggaa ggaaacgaga gcaggatctg      1200
     cagagtcaac tcaaaagtct gcagatacat cacgccgagg agctgagagt aatccacaat      1260
     tcggaaactg gtctgcagaa tcagctcagg caactacaat gtgaaaatgc ttccctgagg      1320
     aaccagattg catctctaaa tggagagttg caacaaatca gcacatcgag agaaaagttg      1380
     caagttctgc ttaaggaacg cgaggacggt ataacatcta aggaatcgca gatacgaacc      1440
     ttacagatgg aggtcgtcga ggcagcagaa cagatgcgta atttggaggc ggatttgcgg      1500
     gagcagctga accgacacaa acacgaatgc gacactcttg aacttcaacg ggcagagtta      1560
     gagaacgaaa ttcaggggtt gcgtacaacg gagcaacagt tgcagaagga gatggaagca      1620
     tgccttcaac gtgagcgaga agccatccgc gagcgaaata cagccgagca agaatactgg      1680
     gatttacacg atgtggtaca gcagttcgtg aatcggaacc agcactgggc atcggagggc      1740
     gactgttctc ctcatttacc tcctcctccg gcggcatggc tagaccaagc tgctaatgaa      1800
     gattgcttaa atcctcttcc tcctccgcct cctcatcttt caaattcggc ttacaattgt      1860
     ctgcccgtga tgtctggtgg ggggattcct ctagttccac ctttcgcaat aggccatgta      1920
     ggaccatccg ctcaccaaat agctgctagg caggtggtta ccaaagagct gccagtcttc      1980
     tctggcgatc cgatcgattg gccacttttc atcagcagtt atcagcattc tacggaagct      2040
     tgcggatact ccaatgctga aaatcttcta cgtttgcagc gaagtttgaa aggaagtgcg      2100
     aaggagtcag taagcagctt tttactccac ccgtcgacgg ttcctcaggt catgtccact      2160
     ctgcaacaac tgtacgggcg gccggaacaa atcgtgaata acatgatcgc caaggttcgg      2220
     gcaactcccc ctccgaaacc ggaccggttg gagacactgg tcagctttgg actggcggtt      2280
     cagaatctgt gtggtcacct gaaagcagtc gggttggaga ggcatcttgc caacccgatt      2340
     ctgctccaag agctggtgga caaattacca gcaacagtga aattcaactg ggcgcttcac      2400
     caagaacagg ttccagaggt ggatttgaac gtgtttagtg catacatggc gaaaatatct      2460
     tcagcggcaa gcagtgtaac acagctgaca gccgtttcgc agaaagttaa agacgaacga      2520
     attcgcccga aggatagatc gtttgtcaac acgcacgttt cagcggatcc accgaaaacg      2580
     agtcgagaag aagagccgag aaccgctacc gaaagaacca gaggaaagca gaaagatgga      2640
     gcagccggca cgatcggtag caagaagtgt gcgatttgca acgtcgacaa ccaccaaatc      2700
     gaaaactgtg catcgttcaa agcgttggat ttggatggta aatggaaggc ggtgaaagtg      2760
     aacaaacttt gtggtcgctg tctcacctcg catgcgaact ggccgtgcaa aggggaaatt      2820
     tgtgggatca acagctgccc caaacgacat caccgcttgc tccactttga tccaccagaa      2880
     acagcgaaaa ctaatagcgc ggttgtaacc gttcatcgac agatatcgtc atcaacgctc      2940
     ttccgcatcc ttccggttac cctgttcggt aaaaatggac agttcgacac ctacgcgttc      3000
     ctggacgatg gatcgtcggt aacactcgta gagcggtcga tcgcagaagc tcttggtgtc      3060
     caaggaaagg tggaaacgct acgaatcgaa tggactggag gcgttaacaa aactatcacc      3120
     ggagcagaag tcgtaacgat ggagatatcc gagaccggtg gaagcaagcg ctacaggctt      3180
     tcggaagtgt acactgtcga taacctcggt ttaccgcaac agaccacgga ctacgcagag      3240
     ctggcaacac gattcgcaca tctcgacaaa ctaccggtga aaagcttcag gtccgcagta      3300
     ccaggaatcc tgatagggca gagcaattgt catctgcttg ctacattgaa gctgcgggaa      3360
     gggcgattga acgagccgat tgcaacaaaa acgaggatcg gatgggcggt atgcggtagt      3420
     ctacggaggt cacaggcggt cacgatgcaa acgcagctcc acatgtacgc agagccgagt      3480
     accgttgacc ttcacgagta cgttcggcgc tttttcgaag tcgagagttt gggagttgct      3540
     gtcgtgcccg aggtgaaagg agtcgaggaa gaacgagcct acaaaatact ggatgaaact      3600
     acgcgccgta ccagtactgg gaagttcgag ataggattac tttggaagca tgactatatc      3660
     gagtttccgg agagtaagcc gatggcggaa cgacgcttca agtgtctcga gaagcgttta      3720
     tcccgaaacc ccgagctgta taacagtgtg cgacagcaaa tagcagactt cacagccaag      3780
     gggtacatac atgaagcgac ggtggaagaa atcgaaggat ttgatctgcg gcgtacttgg      3840
     tatatgccga ttggagtcgt cgtcaatgag aagaagccag ggaaagttcg agttatctgg      3900
     gacgcagcgg cgaaggtcga cggggtatct ttaaactcct tgttgcttaa gggcccggat      3960
     cttctgacgt cgttattatc tgtcctgttc gcatatcggg aacgcgaagt ggcagtgtca      4020
     gcagatgtca aagaaatgtt tctacagatg ctagttcgag agcaggaccg cagtgcctta      4080
     ctgttcccat accgagattc cccagaactt ccgatgacta ccatggtgtc tgatgtggcg      4140
     atatttggag ctgcctgctc tccagcccat tcacagtacg tgaaaaacct gaacgcgacc      4200
     gaacaagaag cagaactgcc ccgaggagca gaggcagtga aaaagcgaca ttacgtggat      4260
     gactacgtgg acagcttcga tacggctgag gaagcattcg aggttgcaaa ggaagtgatc      4320
     gaagtccaca agcgagccgg attccatatt cgcaactgga tgtctagcga caggagcgta      4380
     ttggagaaac tggatgaagc gaatgtgaag ccgtcgaaag ctatgctacc ggataaggac      4440
     gttggatgcg agcgagtgtt gggaatggcg tggatacaac agaaggacga atttgtattt      4500
     tcgttgcagt tttgcgagaa ggtgcgaatc ctgctggacg gcgatgcaat accaacgaaa      4560
     agagaaatgc tgcgtctggt tatgagcctc tacgatcctc tgggtttggt agcgtccttt      4620
     gtcatccatg ggaaaatctt aatccaagaa gtctggcgaa cggagacgga ctgggatagc      4680
     aacattccag gagagatcgc tacacgctgg atggaatggt tgactgttct aaaaagcatg      4740
     actggtttgc gtattcctcg gtgctacttt tcaggatacg aaccgagcag ctacaacaat      4800
     ctcgagctgc atgtgttcgt ggacgcaagc gcccaggctt acgcagcggt cgcatatttc      4860
     cgcatcgtgg atcgaggaca gatcagggtt gcgcttgttt catcgaaaac gaaggttgca      4920
     ccactccgag gactttcgat tccacggtta gagttaatgg ctgcgttact tggagctcgc      4980
     ctacggagaa cgattgaaaa caaccatagg ctgaaggtga cgaaaacatg tttctggagt      5040
     gactcgtcga cggtttgctc gtggatcaag tcggatagtc gccggtatcg ccagtttgtg      5100
     gcattccgag tcgacgaaat attgagtctt tcgaacatcg atgaatggaa atggatttcg      5160
     actaggatca atgtagcaga tgaagcaacg aaatggggaa aaggtccttc ttgcaacgtg      5220
     gatagccgat ggtttcgggg cccagatttt ctgtatgaac gcgaggaagg atggtcaatg      5280
     aaacccgaag aagaagaact tgaggatgag agcgacggag aacttcgagc tgcggtagtt      5340
     tgcagtcatc tagtcgtgca accggttgtc gacacggaaa ggttttcgaa atttgaacgg      5400
     ttgcggaata gcacggcata cgtttaccac ttcattaaca atctgcgaag ctcatggatt      5460
     gagtcagctg gtacgattgg tgtgaccagc aaggaactac agatagcgga aaacttcttg      5520
     tggaggatgg cacaatccga agcgtttcct gaagaagtgg caactttgaa gcgtgaacag      5580
     gatgaaaaga attcgttaag gaagcgacta cctacatcaa gcgagcttgt gaaactttca      5640
     ccattcgtgg atgatcatgg tgtacttcga gtagagagta gagcagcaaa tgcgcaagta      5700
     ttagcctacg atacgaagtt tccgattatc ctgccaagga agcatcgtat tacggagttg      5760
     ctgctggact cctatcatcg taaatacggt catgccaacg acgagaccgt agtcaacgag      5820
     gtgcgacaga aattccacat tccacgcctg cgagtggagg tgcgtcagat cagaaaacgc      5880
     tgcatgtggt gccgtgtgta caaagcaacc ccagttgctc ctaaaatggg accccttcca      5940
     gcggtgcgat tggaaccgtt tgtgcgcccg ttcacctacg tgggcataga catctttggt      6000
     ccgtattcag tgaagctcgg acgaagctcg gttaagcggt gggtttgcct attcacttgc      6060
     cttaccataa gagccgttca tctggaggtg gttgccagtt tgaccaccga tgcttgcaag      6120
     aaggcgattc gacggttcat cgcgcggcgt ggatcccctc aggaaatata ttccgacaac      6180
     gggacaaact ttgtgggagc tagtcgagaa ctacagcagg aaaccagcag aattcacact      6240
     gagttgggca gtacctttac taatgcccag actcagtgga agttcaatcc tccagcagcg      6300
     cctcacatgg ggggttgctg ggagagaatg gtgcgtgccg tgaaatctgc acttgggtcc      6360
     attccgatcg tgcggaaact ggatgacgaa tcatttgcaa ctgtgttggc ggaagcggaa      6420
     agtatggtga actcgaggcc actgacgttc atcccgttgg agacagccga ccaggaatcc      6480
     ttaacgccaa accatttcct gttgctcagt tcgaacggcg tacgggaacc ggagaaattt      6540
     cccacggacg aagtcaaggc attgaggagt agttggaacc tggttaagca cactctggac      6600
     aacttttggc gtcgttgggt ggtggaatat ctgccgacga ttatacgacg gacgaaatgg      6660
     ttccaggatg tacgaccaat caccatcggg gatttggtac tagtggtgga cgagaatatc      6720
     cggaatcgat ggttgcgagg acgagtgatc ggcacgattc caggaaagga cggagtggcg      6780
     cgtcgagcag aagtgaagac ctcagcgggg atcttgaaca ggccatgtac gaaattggct      6840
     gtgctgaacg tagaaggatc tggtgacgcc caaccggaag ctaaggcgac acgcggggga      6900
     gga                                                                    6903
//
ID   BEL-209_AA-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   AAGE02017349;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-209_AA_;
KW   BEL-209_AA-I; BEL-209_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-398
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017349; Positions   34743   34346.
XX
SQ   Sequence 398 BP; 137 A; 70 C; 78 G; 113 T; 0 other;
     tgttctccgc acagcccact gtcggtaact catgcgccac aatacgtaca acgggcgatc        60
     cgggaggcat catcagtcaa cagcgatgac gagcaaaatt gaatgtgggg caattgtttt       120
     gataggcaaa catatcgggt gaaatattat aagttttgga ttggagaagt tttgaattga       180
     attatataaa ggctataata aaaactttat acgcaacgta aaatttgaga tagattagac       240
     agaaatagta cggacactaa attgtaagta caaacgaacg ttatgactag acttatgcta       300
     aacttaaata aacatttttt ttttagcttt gagcttatta ccacccaact ctgggtcatt       360
     gatttgctga gaagaactcc gtaaaatcta tcccaaca                               398
//
ID   BEL-20_AA-I repbase;    DNA;    INV; 5796 BP.
XX
AC   supercont1.208;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AA_;
KW   BEL-20_AA-LTR; BEL-20_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5796
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.208; Positions 1532580 1526785.
XX
CC   Positions [4843-5427] - Integrase core
CC   'GCCAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2125..4050
FT                 /product="BEL-20_AA-I_1p"
FT                 /translation="MTTSSNKIIQTRVSSRDGKYFAVLDFLVTPAITELPS
FT                 GKIDTHLWPLPAGVELADPSFNVPEEVDMIIGAEVFYDVLKQGRLKIGGDF
FT                 PTLAETTFGWVVSGPVNTQRKAAPRTRKHCHINTTQEDINQTLLRFWELEA
FT                 GYVTTKMTATERAVEQHFGKTHSRNSEGRYVVRLPFNDLQNKLDDSYENAK
FT                 RRCNRLISKKQKAKQKAYTDFMNEYRLLGHMQEIGNDPAGGYFLPHHAVCK
FT                 ENSSTTKTRVVFDASAATTTGISLNDTQLVGPTVQSDLITLILRFCTHQVV
FT                 LTADVPKMYRQVQVHPEDRRYQRIVWLNDKGEMVTFELTTVTYGCSSAPYL
FT                 ATRSLIQLAKDEANEFPLASRVVKKDSYIDDFITGGRTAAEVVETYEQLQA
FT                 MLKRGGFGAHKFCSNSSEVLRAIPAELQEQQVDFESSEVNNTIKILGLIWN
FT                 PTDDYFAFNVTNLINQGTPTKRVVLSEISRLYDPLGFLGPVGTIAKLTMQE
FT                 LWRLKLDWDDELPEEQMEKVVHVTFREQLLSIRNIRKKRCVIPAGAQRIEL
FT                 HGYCDASKRAYGACLYVRCILADGKINVQLLCSKSRVAPLKPVTIPRLELC
FT                 AGLVLAQLTRKSMEALEVNFDSVTLWSDSQIVLSWLKKSPLVLL"
FT   CDS           4819..5796
FT                 /product="BEL-20_AA-I_2p"
FT                 /translation="MGDLPSYRVTPSPAFSKIGIDFAGPFVLKESGRKPRF
FT                 FKAYVCVFVCMSVKAVHLELCTDLRSETFLAALQRFVSRRGLPSDLFSDNG
FT                 TTFVGANHELASLRKLFEDQAHTEKLAEFCSAKGIIWHFIPPRSPHFGGIW
FT                 EAGVKSMKHLLKRVVGETRLTYEEMATFLTEAEAVLNSRPLCPLSDDPNDL
FT                 EALTPSHFLIGRPGLAIAEPSYGEQKINRLSRWQHVQSMREHFWNRWSTDY
FT                 LHTLQTRKKWKDGVLDIKIGSLVLLRDENVPPQLWKMGRIVALHPGKDGVV
FT                 RVITIKSSSGEYRRAVAKVCLPPDVESDDPRGGV"
XX
SQ   Sequence 5796 BP; 1689 A; 1229 C; 1436 G; 1442 T; 0 other;
     ttttttggtc ctatcggaac cggatgtgga cagctcgcga ttttctggtg atttaacccg        60
     gattcgttac cgatcgggag tgaatttagt ggatttgcac cgcgtgcaaa atggcgtagc       120
     caatgattgc agtataccga ggtggtgtgc gtgcaaagat gcgatcgcaa atgctcgatg       180
     ctttgtgaat cgatttttgg tagtgatgaa gtgattggat ctgcttgaaa tgcggaaagc       240
     ttgaattgtt tagtgaaaat ccatgatttg ggttttaatt acgaaaatca gcatcagtgt       300
     gtgatttatg cgcagacagt gctctgccac cgatgaaaaa agctccaagc tatcagaaag       360
     aagaattagg ttacgtttga ttgtgggctt gccagagcga gtcggcaaat gtaaaagctt       420
     gaaagctttc aggagtgtgt ttgtgtaaga ttgctacgcc atatctgagc gtcagcaaac       480
     gcgatggttt gagctttccg aatgggaaca gtgttggatt gctgcatctc gacgatcagc       540
     aaaagcgaaa acttgatagt tttccagaag aattgtggtt gtgttagtaa tgctgcacgc       600
     agctaacgtc tgaaaagact tgtgaaagat tcattcgtat aagctcaaag ctttccgaac       660
     gagaagtgtg gttatgtgcg attcatgttt gccgcgactg tgaatcggca attgcaaaag       720
     ttaaagagcc actgaagaac aaagtgaggt tatgaatttg tttcggtgaa gcgcgatgct       780
     taccgaatga aaggaaatgt gttttggtgg ttgtcaatac aacaaccgaa gaaaacttgt       840
     caacattggg ttgacaacta tagtgaagtg aaaatcgaaa tgtaaccaca taaccgaaaa       900
     atgaccggaa aaaaaagaag aatccaaaat tgaagagtgc tactcaaaat gaaaatgaaa       960
     gtgatacacc gaaagtgaaa atgagtcaaa tctcgaagaa gagtcttcag ttcgatctct      1020
     cgaaaaacaa aagtgacgaa aatagaacgc cggacactgt taatcagttg tcagaacaat      1080
     ttccatcggt cgctcctgct ttgacagtga atcagcaact cgttgattgg agaagcgtca      1140
     ggtaaaatag accaggatat aatcaataat aatgattatc aatcagcttg gcgaatgcta      1200
     gaagatgcct acgaggatca acgtttgatc atcgatacgc atatcgacgc actgttcaac      1260
     cttccaagaa ttacaaagga gaatggagaa gagttgcgga aattggtaga atcatgtaca      1320
     aagcacgtgg atgcattgaa aacccatgat cttcctgtgg aaggattatc agaaatgatg      1380
     ctcatcaaca tcattagcaa gcggctggat agagagacta ggaaacactg ggaatcgtca      1440
     ttgtctcatg atgatcaacc tagttatgat gacttgttag aattcttgaa ggatcgttgt      1500
     cgtattcttc agaaactgtc aaatcatggc caagccagtc aaccacagac agtaatcaag      1560
     cccaagcaac agaaggtttt cgttcagacc agtaaagaaa catgcccatg ctgctcaggt      1620
     tctcacaata tttacaaatg tgaaaccttc aagaaactac aaatccctga acgtttcgag      1680
     aaggtgaaaa gggcaggact gtgcttcaac tgtcttcgca ccggacatcg tacagtggaa      1740
     cgcaagacag ataagcaatg caaaacgtgt ggcaaacgcc accacagtta tttgcattat      1800
     gaacgtgctg aagatcctaa gaagccgagc gacaacaatc aaccgaagaa ccctgtgccg      1860
     caagcctaga ttgaacccga accggaacat ctagcggaaa aacgtacgat tagctgttgt      1920
     acgcaagcaa cgtccgtgac gaagcagatt ttcctgtcaa ctgcgaaggt gttagtgagt      1980
     ggatctggta gtgtgactac tacatgtaga gccttgctcg attgttgctc ggagtcgaat      2040
     ctgatttcgg aaaaattggc tacaaaattg aacatcaaac catcggttat tgacccgccg      2100
     attttgatct gcggtttaaa cggaatgacg acgagtagca acaagattat ccagacaaga      2160
     gtttcgtcta gggatggcaa atactttgct gttctcgact tcctggtgac ccctgccatc      2220
     accgaacttc cttcaggtaa gatagacacc catttgtggc ctctccctgc cggcgtagag      2280
     ttggcggacc cctcgttcaa tgttcctgaa gaagtcgaca tgattattgg cgccgaggtg      2340
     ttctatgacg ttctgaaaca ggggcgtctg aagattggtg gcgattttcc cacactggct      2400
     gagactacat ttggttgggt tgtcagtgga cctgtcaaca cacaacggaa ggcagctccc      2460
     cgcacgagaa aacattgtca tattaacacg actcaagagg acatcaacca aactcttttg      2520
     agattctggg agctggaagc aggatacgtt accaccaaga tgactgcaac tgaacgcgct      2580
     gtagaacaac atttcgggaa aacacactct cgaaatagcg aagggaggta cgttgtaagg      2640
     ttacctttca atgatcttca aaataagctt gacgattcgt acgaaaatgc caagcgtcgt      2700
     tgtaatagat tgatcagtaa aaaacaaaag gcgaaacaaa aggcgtatac agactttatg      2760
     aatgagtatc gtctacttgg acatatgcaa gagataggca acgatcccgc tggtggttac      2820
     tttctcccac atcatgcggt gtgtaaggag aatagttcaa ctaccaaaac tagagttgtt      2880
     tttgatgcct cggcggccac gacaacgggc atatcgttaa acgatacgca attggtgggt      2940
     ccaactgtac aaagtgattt aatcacactc atcctgaggt tttgtacgca ccaagtcgta      3000
     ttgacagctg atgttcctaa aatgtaccgt caggtacagg tacatccaga ggaccgacga      3060
     taccagcgga tcgtttggtt gaatgacaaa ggagagatgg ttacatttga gctgacaacc      3120
     gtcacttatg gatgctccag cgctccctac cttgccacga ggagtttgat acagctagcc      3180
     aaggacgagg caaacgaatt tccactggca tcgcgagtag tgaaaaagga tagctacata      3240
     gatgatttta ttaccggagg acgaacggct gctgaagttg ttgagacata cgagcagttg      3300
     caagcgatgc tgaagcgggg tggttttgga gcacacaagt tctgctctaa cagttcagag      3360
     gtgctacgag ccataccggc tgagctacaa gagcagcagg tggatttcga gtcatcggag      3420
     gtaaacaaca ccatcaaaat tttaggcttg atctggaatc ctactgatga ttattttgcg      3480
     ttcaatgtga cgaacttgat caaccaaggc acacctacaa aacgagtcgt tctgtctgag      3540
     ataagtcgac tttatgaccc gctaggtttc ctaggaccgg taggaaccat tgcgaaatta      3600
     actatgcagg aactatggcg attgaaactt gattgggacg acgagcttcc tgaagagcag      3660
     atggaaaaag tcgtccatgt aacttttcgt gagcaattgc tgtccatacg aaacattcga      3720
     aagaagagat gtgtcattcc agccggtgcg caacgtatcg aactacatgg ctactgcgac      3780
     gcctcgaaac gagcttatgg tgcctgcctg tatgtgcggt gtattctagc agatggtaag      3840
     atcaacgttc aacttctctg cagtaaatct cgtgttgcgc ctttgaaacc ggtcaccata      3900
     ccacgccttg aattatgtgc tggactggtt ctagcacaac tgacgcgaaa atcaatggaa      3960
     gcgttggaag tcaatttcga cagtgtcaca ctctggtcag attcccaaat cgttttgagc      4020
     tggctaaaga aatctccgtt ggtactctta tgaattcgtt tgcaatagag ttgtttccat      4080
     catcgagctc acaccaaact tccagtggcg ctacgtgaga tccgagtgta atcctggcag      4140
     atgcgttatc acgtggaatg cttccagagc atctaataga aaaccggcta tggtggggag      4200
     gttcacccga acttcgacat tcgcgatatt tggaagaaga agagatgcct cccattgacg      4260
     atgaaggcct gccgaaacta ccaaaaagtg ttttgatcaa catcaaaaag gagcccgctt      4320
     tttatttcgc gcgagtcagc aagttcacac gtctgtagcg tgcatgggca tatgtttgga      4380
     ggttcatcga caactgccga gcgacgaaga agaactgtgg gcatctaact gcatcagagc      4440
     tatccagacc aactcaaaca atcgtgaagc tggttcagga ggaaatgttc ccggatctgc      4500
     tcaaggatct gaaaatggag aaaacgaagc gaaataatta ttctgggcta gcaccatatt      4560
     tggaccaagc tggcataata agggtcggtg gacggttgaa atattcgctt attccgtacg      4620
     agggtaaaca ccagatcctc cttccagaga aacaccatgt taccttgttc cttgttcgtc      4680
     aattgcatga aaacaatctt catgtagggc aaaatggatt agtgtccatt atccgccaac      4740
     agtactggcc tgttaaggtg gatagctgga cgctgctata cctgctacaa acacaatccg      4800
     caacaattga agcagttcat gggcgacctg cctagttatc gtgtcacccc atctccagcg      4860
     ttttccaaaa tcggaatcga ctttgcaggc ccattcgtgc tgaaggaaag cggtcgcaag      4920
     ccaaggttct tcaaggcgta cgtctgtgta tttgtgtgta tgtccgtaaa agccgtgcat      4980
     ctggagctgt gcaccgatct tcgttccgag acattcctcg ctgcactaca acgatttgta      5040
     agccgacgtg gcctccctag tgaccttttt tctgacaacg gtacgacatt tgttggcgcc      5100
     aaccacgaat tggctagctt gcgaaagtta tttgaagatc aggctcacac tgagaaactg      5160
     gctgagttct gcagtgcaaa aggaatcatc tggcacttca tccctcccag aagtccacac      5220
     tttggtggga tctgggaggc tggagttaaa tcaatgaagc acctactcaa acgagtcgtt      5280
     ggcgaaacta gattgaccta tgaggaaatg gcgacattcc tgacagaagc tgaagctgtt      5340
     ttgaattcgc gtccgttgtg tcccctctcg gatgatccga atgatttgga agcactgacg      5400
     ccatcgcatt tccttatcgg acgtcccggt ctagcaattg ctgaaccgtc gtatggtgaa      5460
     cagaagatca acaggctgtc aaggtggcag cacgtgcaga gtatgaggga gcatttctgg      5520
     aaccggtggt ctacggacta cctccacacg ttacaaaccc ggaagaaatg gaaggatggc      5580
     gtactagata tcaagatagg atctttggta ttacttcgcg acgagaacgt gccaccacag      5640
     ttgtggaaaa tgggtcgcat cgtggccttg caccccggca aggacggcgt agtcagggtg      5700
     attaccatca agtcttcgag tggtgaatac cgacgagcag tagcgaaggt gtgtttgcca      5760
     ccagatgttg aatcggacga tccaaggggg ggtgta                                5796
//
ID   BEL-20_AA-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   supercont1.208;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AA_;
KW   BEL-20_AA-I; BEL-20_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-200
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.208; Positions 1526784 1526585.
XX
SQ   Sequence 200 BP; 64 A; 38 C; 33 G; 65 T; 0 other;
     tgaaagagta aagtttgaaa tacagtccac atttctttcc gtgtaagttt ctcttttgca        60
     ttacctgaaa aataaacaaa ctttgtatct ttgttcagtt ataaaaaaac gctgtaccta       120
     ttaaacgcgt tcgtgttttg tcttttagta aaaccgaaga agtcgctgtc cagaccacgc       180
     aaaagttgat tcccggaaca                                                   200
//
ID   BEL-20_AG-I repbase;    DNA;    INV; 5311 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   BEL-20_AG-I.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5311
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1431-1431 (2010).
XX
DR   [1] (Consensus)
XX
CC   Family composed of three sequences presenting high degree of
CC   identity among them (p-dist= 0.0068; SD=0.0010), two of them
CC   contain 213 nucleotides long identical LTRs. The consensus
CC   sequence presents an ORF of 1758 aa with conserved domains for
CC   RT, PeptA17 and RVE.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..5261
FT                 /product="BEL-20_AG-I_1p"
FT                 /translation="VKVKMTQAKASSEESFRGFSDSETENSTIIDNSAMAL
FT                 ALAKEERDGLIECLVRLEKFVENSGIVELEQVEARLKRLERCWEHFVKISK
FT                 EIRQFDDQHNKKENFAIFADFDERVCVLTGKLKRMQRSSNVPKKEENMSNV
FT                 TNTSTGGVKLPKMALPEFQGKFDEWLQFRDMYEQMVHNNITLSKVEKLYYL
FT                 KSSLKGEALKVIEAFPICAASYDAAWDAVVSRFANPYIQKKRHTNELLNWP
FT                 RMKKPTAANINAVIDGFERHTKLLQQLGETPSTWGIMLTQLLTSKLDEGTQ
FT                 REWERTVEAQDDANYNDLIKFLRGQVRILEALGEDKIEQRNQPLPTSKAPK
FT                 LAIHVTAGEKKLKCNVCGAEHSTAKCDEFISMAVKERIKIARAKELCLNCL
FT                 GKGHFRNQCASKVRCRACKGAHHSLLHMWLPKENTMPSTSAQSNNNVDETF
FT                 VNEAQGANHGNATLTMAVTRSGVSCGVLSTALVNVKAKNGMFIQTRALLDS
FT                 GSQLNVLTEKLCRKLGLQRRASGIKLTGIGKHEVSSDIAVTAEVASQSNNY
FT                 ARRMEFLVMDGITHNLQPVHLPNACIPNEGKIADPGWHQGGEIDMLLGSEH
FT                 FFEFLALDGGRPGVYRMNDSHPYFVNTVFGWVLTGPKQTQQKTSAICSHVS
FT                 IAEQIERFWSIEEVCPENSLTQEEKDCEQSFVTTHSRDETGRYIVKLPIKL
FT                 KGWERIGESLGTAKKRFLQLENRLSRDVALYENYCSTIKQYQELGYLVEVS
FT                 PDMSQGDNVKPCYLPHHPVVKLSSASTKVRPVFDGSAKTSTGFALNDCLLN
FT                 GPVLQDTLFDLIVRFRSYAIALIADIEKMYLQVKVHEEHTPLQRILWRSSQ
FT                 QEEIKHFELQRVTFGLTSSSFLATRVLFQLAADEGERFPLGKRALQESFYV
FT                 DDYIGGANSDAEAVQLVSELRQLLEKGGFHLRKWNSNNKMVLRNLSPEEKD
FT                 KCKLVSIGPEDQVKTLGVYWDPTTDSLGVAADFDDVSNEPPTRRNVFSFIA
FT                 KLFDPLGIIAPIIAWAKIMMQRLWIATKEWDDPIPVDLADQWELFKKQLYL
FT                 VKEMRIPRYVMLLDHTNVQIHSFADASEVAYGACVYLRVTNREGTVKIGLL
FT                 AAKSKVAPLKKLSLPRLELCAAVLGAKLWKTACIALKQQITESYFWSDSTI
FT                 VLNWLRAPSYTWATFVANRVATIQDLTQGNHWQHVKGSENPADILSRGALP
FT                 NQLTKEWFQGPHWLSNNECTWSFPEEKSDIDESQLERKRQVAVMTMGVAEH
FT                 PFLDRYSSYWKCGRVAAYCIRFAQRCRNEPLVSGPITYNEFIRAIRRLVVD
FT                 LQRIEFHVEMRELEEKGELLSTSKLRKLRPFLDDEGVLRVGGRLRQTNIRY
FT                 NTKHPMILPAKGNFTRIVAKAYHEMALHGGPRITLATMRQDFWPLNGRILA
FT                 NYIHRNCLTCFKANSTPVAQPIGQLPVKRVTPARPFLTTGIDFCGPVYLKP
FT                 VHRRATSQKAYIAVFVCFCTKAVHLELVEDMTTSAFLAAFRRFISRRGYPS
FT                 DVYTDNGLNFRGAQRELNDLFRLLSDDSFQATTREETMKCGITWHFIPPRA
FT                 PNFGGLWEAAVKSTKKTLTKLFGSQRLSFADMSTVLTQIEAQLNSRPLTPL
FT                 SEDPEELNVLTPGHFLIGEALLTLPDANHVTTPENRLKHFEQLQQLVQRHW
FT                 QQWSKEYICELHNVSQKGLRSKKIEIGQMVIVKEDLPPNEWCLGRVIGVHP
FT                 GSDQVVRVVTIKTSKGTYKRPVSRVCLLPDSED"
XX
SQ   Sequence 5311 BP; 1635 A; 1047 C; 1311 G; 1318 T; 0 other;
     tggtaaaagt gaaaatgacg caagccaaag cctcaagcga agaaagtttc cgtggtttct        60
     cggactcaga aacggaaaat agcacgatta tagacaacag tgcaatggct cttgctctcg       120
     caaaggagga acgagatggc ttgattgaat gtctagtaag actagaaaaa tttgtggaaa       180
     attcgggaat agttgagttg gaacaagtcg aagctcgatt aaaacgtctt gagaggtgct       240
     gggagcattt tgtaaagatt tcaaaggaaa taaggcagtt tgacgaccag cacaacaaga       300
     aagaaaattt tgctatattt gccgacttcg atgagcgtgt gtgtgtgcta acaggcaaac       360
     ttaagagaat gcagcgtagc agcaacgtgc caaagaagga agagaatatg agcaacgtta       420
     ctaacacatc cacaggcggt gtgaagctcc ccaaaatggc gctaccagaa tttcaaggta       480
     aattcgatga gtggctacag tttagggaca tgtatgagca aatggtgcac aacaacataa       540
     ctctttctaa agtagaaaag ttatactatt tgaagagttc actaaagggt gaagcattaa       600
     aagtgatcga agcttttccg atatgcgcag caagctatga tgctgcatgg gacgctgtgg       660
     taagtcgttt tgctaaccca tacatacaaa agaaaagaca tacgaatgag ttgctaaact       720
     ggccgagaat gaaaaaacca acagccgcaa acatcaacgc tgtaatcgat ggttttgaaa       780
     ggcacacaaa gttattgcaa cagttaggag aaacgccgtc aacatggggt atcatgctca       840
     cgcagctttt aacatcaaag ctcgatgaag gaactcagcg tgagtgggag cgaacagttg       900
     aggcacaaga tgatgctaat tacaacgatc taataaaatt cttgcgagga caagtacgaa       960
     ttttggaagc tttgggcgaa gataaaatag aacagcgaaa ccaaccgttg ccaacatcaa      1020
     aagctccgaa attggcgatt cacgtgacag caggtgagaa aaagcttaaa tgcaatgttt      1080
     gcggtgcaga gcattcaaca gcaaaatgtg acgagttcat ttcaatggcg gtgaaagaac      1140
     gaatcaagat tgcgcgagca aaagagcttt gtctaaactg tttaggaaaa ggccattttc      1200
     gaaaccaatg cgcatcaaag gtacgttgtc gtgcatgtaa gggtgctcat cattctcttt      1260
     tacatatgtg gttaccgaaa gaaaacacta tgcctagcac atcagctcaa agcaacaaca      1320
     atgttgatga aacattcgtc aatgaagcac aaggtgcaaa tcatggaaat gctacgctca      1380
     ctatggctgt tacaagatca ggtgtttctt gtggcgtgct ttctacagct ctagtaaatg      1440
     tgaaagcaaa gaatggtatg ttcattcaaa cgcgagcact attagatagt ggctcacagc      1500
     tcaacgtctt gactgagaaa ctttgtagaa agcttggttt acaacggcga gctagcggaa      1560
     tcaaactaac aggtatagga aagcatgagg tcagtagtga catagctgta acggcggaag      1620
     ttgcgtcgca gagcaacaat tatgcgagaa gaatggaatt cttagtgatg gacggcatca      1680
     ctcacaatct tcagccagta catcttccta acgcatgcat tccgaatgaa ggtaaaatag      1740
     cagaccctgg atggcatcag ggtggagaga tcgatatgtt gttggggtcg gagcatttct      1800
     ttgaatttct agcgctagac ggcggccggc ctggagtcta tagaatgaac gattctcatc      1860
     catattttgt taatactgtg ttcggctggg tattaactgg gccaaagcaa acgcagcaga      1920
     aaacatcagc gatttgttct catgtgagta ttgcggagca aattgagcga ttttggtcga      1980
     tcgaagaggt gtgtccagag aacagcttga cccaagaaga gaaagattgt gagcaaagtt      2040
     tcgttacaac acattctcgt gacgaaacgg gtcgatacat agtaaaactt cccataaagc      2100
     tcaaaggttg ggaaaggatt ggagagtcct taggaacggc aaagaaaaga tttctacaac      2160
     tggaaaaccg attgtcgagg gatgtggcac tatacgaaaa ttactgctca acgataaagc      2220
     agtatcaaga gctgggatat ttagtagagg tatctcctga catgtcacaa ggtgacaacg      2280
     tgaagccatg ctatttacca catcacccag ttgtgaaatt atccagtgct agcaccaaag      2340
     tgcgcccggt tttcgatggt tccgctaaaa cctcaactgg ttttgcacta aatgattgcc      2400
     tcctaaatgg acctgtgttg caagacacac tctttgatct aattgtgcga tttagatcgt      2460
     atgccatcgc gctcattgcg gacatcgaga agatgtactt gcaggtaaag gttcatgagg      2520
     aacacacacc attgcaacgc atcttatggc gatcttctca acaagaggag ataaagcatt      2580
     tcgaacttca gagagtcaca tttggcctga cgtcatcatc ctttttggca actcgagtgc      2640
     tctttcaact tgcggcggat gaaggagagc gatttccatt aggtaaaagg gctttacaag      2700
     aatcattcta cgtggatgac tacatcggtg gagcaaatag tgacgctgaa gctgtccagc      2760
     tagtaagtga gttgcggcaa ctattggaga aaggaggttt ccatttacgg aagtggaact      2820
     caaataacaa aatggttttg cgaaacctgt ctccagagga gaaagataaa tgcaagcttg      2880
     tgagtattgg accggaggat caagtaaaaa cgcttggcgt atattgggat ccaactactg      2940
     attcgttagg agtagcggca gatttcgacg atgtgtcaaa tgaacctcct accaggcgga      3000
     acgtgttttc gttcatagcc aaattattcg acccgcttgg cataattgct ccaattatcg      3060
     cctgggcaaa aatcatgatg cagcgtttgt ggatagccac aaaggaatgg gatgatccaa      3120
     tccctgtgga tttggctgac caatgggaat tgtttaagaa acaattgtac ctggtaaagg      3180
     agatgcggat tccaaggtat gtgatgcttc ttgatcatac caatgtgcaa attcattctt      3240
     ttgcagatgc ttccgaagta gcctatggcg catgcgttta cctccgagta acaaatcgcg      3300
     aaggcacagt aaaaataggt ctccttgcag caaaatctaa agtagcgcca cttaagaagt      3360
     tgagcttacc acggttggaa ctctgtgctg ctgtgctggg agcaaaactt tggaaaactg      3420
     catgcatcgc cttgaagcaa caaataacag aaagttattt ctggagtgac tctaccattg      3480
     tgctgaactg gttaagagct ccatcgtata cgtgggcgac tttcgtggca aatagagtcg      3540
     ccacgataca ggacttaacc caaggaaatc attggcaaca tgtgaaagga agtgaaaatc      3600
     cagcagacat cctgtccaga ggtgctttac ctaatcaact cactaaggaa tggttccagg      3660
     ggccacactg gctctcgaat aatgagtgca catggtcatt tcctgaggag aaatctgaca      3720
     tcgatgaatc gcaactcgag cgaaagcgac aagtggctgt aatgacgatg ggcgttgcag      3780
     aacatccttt cctggatcgc tattcctcct actggaaatg tggtagagtg gcagcttatt      3840
     gtatccggtt tgctcaaaga tgcaggaatg agccattagt cagcggtccg attacatata      3900
     acgaatttat tagagcgatc cgacgtttag tcgtcgattt acaacgaatt gaattccatg      3960
     ttgagatgcg ggaattagaa gaaaagggag aattgcttag cacatcaaaa ctaaggaagt      4020
     tgcgaccgtt tctggatgat gaaggtgtcc tacgtgttgg aggacgtctt aggcaaacaa      4080
     acatcagata caacacaaaa catcccatga ttcttccggc aaagggcaac tttacgcgaa      4140
     ttgttgcaaa ggcataccat gagatggcgc tgcatggagg tcctcgcatc accctggcaa      4200
     caatgaggca agatttttgg cctttaaatg gcagaatatt ggcaaactac atacaccgaa      4260
     actgtttaac atgtttcaag gctaattcaa caccagttgc gcagccaatt ggccagctac      4320
     cagttaagag agtgacacca gccaggccat ttctgacgac tggtatcgat ttctgcggcc      4380
     ctgtgtattt aaaaccagtt caccgtcgag caacatctca gaaggcatac atagcagttt      4440
     ttgtatgttt ttgtactaaa gcagtgcatc tcgaactggt tgaggatatg acaacatcag      4500
     catttttggc ggcatttaga cggttcattt cgcgtcgtgg ttatcccagt gatgtctata      4560
     cggataacgg tttgaatttt cgtggagcgc agcgtgaact taatgacctt tttcgtttgt      4620
     taagcgacga ctctttccag gcaactacaa gggaagaaac gatgaagtgt ggaatcacct      4680
     ggcacttcat acctccgaga gcacccaact ttggagggct atgggaggcg gccgtgaagt      4740
     cgactaagaa gacgcttacc aaactgtttg gatcccagcg attgtcattt gctgacatgt      4800
     ctaccgtgtt gacacagatc gaggctcagc ttaactcgcg cccactcaca cccttatcgg      4860
     aggatccaga ggagctcaac gtattgacac ctggccattt tctcattgga gaagctctat      4920
     tgacgttacc agatgctaat cacgtgacaa cacccgagaa tcgtttgaag cactttgagc      4980
     agctgcagca gctcgtgcaa cggcattggc agcaatggtc gaaggagtac atttgtgagt      5040
     tgcataatgt cagtcaaaag ggattacgaa gcaagaagat cgagataggt cagatggtaa      5100
     ttgtgaagga ggatttacca ccaaacgaat ggtgtttagg cagagtaata ggagtgcatc      5160
     caggtagtga tcaggtagta agagtagtga cgattaagac gtctaaggga acttacaaga      5220
     gacctgtgtc aagggtgtgt ctgttaccag atagtgaaga ttagattgtt gaaaatgttt      5280
     ttattgaaac attacttcaa ggcggccggt a                                     5311
//
ID   BEL-20_AG-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   27-SEP-2010 (Rel. 15.09, Created)
DT   27-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Bel-20_AG-LTR.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-213
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1432-1432 (2010).
XX
DR   [1] (Consensus)
XX
CC   LTR from Bel-20_LTR-I.
XX
SQ   Sequence 213 BP; 85 A; 40 C; 41 G; 47 T; 0 other;
     tgttgggaat atgtaacgat caaccgtcaa agttagcgaa ttcaaaatat taacgaactt        60
     aatgacattt aacgaacgaa atgtcaaagg taggaagacg gctgcttggg aagtgtcaga       120
     ttgaaaaccg catggaacag aacacaacgt agggcagaca acacaacaac acattcctga       180
     ataaaagaat tctattttca cttaaatcac cac                                    213
//
ID   BEL-20_AnFu-I repbase;    DNA;    INV; 6088 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6088
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 703-703 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..5973
FT                 /product="BEL-20_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MNQDDRTEQGGQAANQREDQLPSEDRTAERDGVVAMN
FT                 TTPSCSARSPAAVEGSTQSEGTLGHRGEQTVQTPWGYFPVRYRNLDAANVP
FT                 PEAARPFLNNTPTHAQNGHTQPRGSRRVNDGASNPTMANAHRSATSERFMT
FT                 ADIELHRKRLELDRLKIEFQQRQIELRERELEFLQMESDAREARENASALG
FT                 RGSTWLLNQQNGAETAVRSAEDELQEWQRAMDELMLRDPRTRESTFPQPRA
FT                 YFYGPDTSVHTNGHRIGHSTLAHPQPHAPGTYQRNAFSDAATLGFLGSSSL
FT                 SESQRAARKASGKELPTFTGSAEEWPIFISSYEHSTAACGYTDDENLLRLQ
FT                 KALKGKALEAVNSLLLLPSGIKEAMNILKLRFGRPDVIVESLMEKVRGMPA
FT                 PRADRLETLAEFGFAVKKLCATIQASGLPEYTCNVVLLKELIAKLPSSTTI
FT                 EWARHQKELPSVTLSDFGRWIGELAEALIVVVPVKTETSNDADRRRSVKPS
FT                 RPEQRPTTTAHLNVHTPDARGKYAPPRPKCSACQGECVALDECERFRKMTV
FT                 AARKDHVRESKLCRKCLKFHRGWCNVKTTCGLNGCEAMHHKLLHGALSVVN
FT                 EAEKHCLTHSASNDHTLFRYVPVTVHGNNGRTVKTFAFLDEGSSATFMDHS
FT                 LLEELGLSGLSKPLSLRWTGDTTREETTSVQLPVRISGEYQGAIVHELAKV
FT                 HTVKNLALPAQSVSTNQLGAVYPHLKGLPLTSYVNATPRILIGVDNCRLGK
FT                 PLKCAEGRVNEPIATKTRLGWILYGPCPIATINVAESHRSFHICSSDDNMD
FT                 GTLTAEVKAFFSLDSLGIVKLQNPLKSKDDERALEILRKETKLQGDRFVTG
FT                 LLWKYDDIRLPCNKAAALKRHQTLKKKMEKDPELAVAVNAKMSDYIQKGYI
FT                 RRLSASEAENKQLNDWFLPIFPVTNPNKPGKIRMVFDAAAKVSGVSLNSFL
FT                 LPGPDLLAGLLSVLFKFREYRIAVVGDIREMFHQVTMRKQDQRSQMIFWDG
FT                 DEPHGDPAVYAVTVMTFGAACSPSSAQFVKNRNADRFEKQYPRAALCIRDE
FT                 HYVDDMLVSVETEVEAVTLAKEVRYVHAQGGFEIRNWVSNSTLVVNQLQAQ
FT                 AEQHKGINMGYDLTTEKVLGMWWDTASDTFTFRLSGQFKEKLQAGTTSVTK
FT                 RNLLRILMSVYDPMGLLGLFLMFLKVLLQEIWRSGIGWDQELDGHLAEKWR
FT                 TWQSVLPEIQNVKISRCHRRLTSIRARVQLHVFCDASETGMAAVAYLRFEE
FT                 DEVIECALVGSKTRVAPMRFVSIPRLELQAAVIGARLAATIIASHRLNISR
FT                 TLFWTDSRNVLSWLRSDHRRYNQFVAFRVGELLETTDVEQWRWISTKLNVA
FT                 DDGTKWTRTPDLSPTSRWFTGPSFLWNSESLWPGYEMPPTNTPEELRPSVL
FT                 HHSVVDPLVDFHRFSKWKRLLRTVAYVVRFVANIRRAMQKDVILGGPLIQE
FT                 ELAQAERIVINQIQADVYAYEIRCLKKTNSQLHPWKTKVEQNSSLYKLSPV
FT                 LDEHGLIRMRGRLAETLSISETLRQPIILPRKHRGTELLILDYHERYKHCN
FT                 HRTVVSELRARYYIPRVLGEYNRVRNSCQRCKVDGAKPESPSMGNIPHQRT
FT                 AVGQRAFSFTGVDYFGPLLVAVGRRVEKRWGVLFTCLTSRAIHLEMAHSLT
FT                 TASCIMAIRRFIARRGKPLEMISDRGTNFVGSARELEEALRAVDHDALMVE
FT                 FTGPEMNWSFNPPAAPHFGGCWERLVRSVKKVMGQFDLPRKPTDEVLMSTF
FT                 AEIELIINSRPLTYVPLNDEMDTPLTPNHLLLGSSNGCKPPCVFADGEAVI
FT                 KSSWRAAQHNAEVFWKRWVADYLPMLTRRTKWFKNVRPIQVGDIVIIVDNS
FT                 LPRNSWPKGRVIEVVRANDGQVRQASVQTSNGIFKRPATKLALLDVKPKIL
FT                 TCDIQDK"
XX
SQ   Sequence 6088 BP; 1658 A; 1464 C; 1673 G; 1293 T; 0 other;
     ttccaaaaaa ttagtgtgaa acttcaataa ttcagtttaa ataatcgcta aaaccgtagt        60
     ttcgcgcgtg tttcgagtat aatcgatcgt gtataaaaga gtaaattatc catcgaggat       120
     aatcgcgtcg gataagcgga gtgcaatcgt ggactgtgcg tgaaaaagtg tatcgctagg       180
     atgaaccagg acgatcgaac tgagcaaggc gggcaggcgg cgaaccagcg agaggaccag       240
     ttaccctcgg aggaccggac ggcagagcgc gacggagtag tcgctatgaa tacaacaccg       300
     tcctgttcgg ctcgatcgcc agcggccgtc gaaggatcga cccagagcga agggacgcta       360
     ggtcaccggg gtgagcaaac cgttcaaact ccgtggggat actttccggt gaggtacaga       420
     aacctcgacg cggcgaacgt gccaccggag gcagcccgac cgttccttaa taatacacca       480
     acacacgcac aaaatggcca tacacaaccg cgtggttcga gacgcgtcaa tgatggcgct       540
     tcgaacccaa cgatggcgaa tgctcatcgg tcagcaacct ctgaacggtt catgaccgcc       600
     gacatcgaac ttcacaggaa acggctggaa cttgatagac tgaaaatcga attccagcaa       660
     cgccagatag agctacgcga gcgcgagttg gagtttttgc agatggagag tgatgcacgt       720
     gaagcacgtg aaaatgcaag tgcactggga cgagggagca catggctgct gaatcaacaa       780
     aatggcgcgg aaactgcggt aaggagcgct gaagacgaac tccaggagtg gcaacgcgcg       840
     atggacgagc ttatgttgag agatccccgc accagggaaa gcacgtttcc gcaaccacgt       900
     gcatatttct acggacccga cacatctgta catacgaacg gacaccgaat cggacatagt       960
     acgctggcac acccgcaacc acacgcaccc ggtacgtacc aacgtaacgc attctcggat      1020
     gcagctactc ttggcttttt aggatcgtct tccttgagcg aatcgcagag agcagcgagg      1080
     aaagccagcg gaaaagagtt accgaccttt acgggttccg cagaggagtg gccgattttc      1140
     atttcgagtt acgaacactc gacggcagcc tgcggctaca cggacgacga aaatctgctt      1200
     aggttgcaga aggcgttaaa aggaaaggcg ctagaagcag ttaattcgtt gctgttgctg      1260
     ccatctggga taaaagaagc catgaacatt cttaagcttc gatttgggcg acctgacgtg      1320
     attgtcgaga gtcttatgga gaaagtgagg ggcatgccgg ccccgagagc tgatcggctg      1380
     gagaccttgg ccgaattcgg atttgctgta aaaaagctgt gtgccaccat ccaggcatcc      1440
     gggttaccag agtacacgtg taacgtggta ttattaaaag agctgattgc aaaactgcca      1500
     tcatctacga ccatcgaatg ggcgcgacat caaaaggagt tacccagtgt gacgctgtca      1560
     gacttcggaa ggtggattgg cgagctagct gaagccctca tcgtcgttgt tccggtgaaa      1620
     acagaaacat cgaatgacgc agatcgtcgg cgcagcgtga aacctagccg tccagagcaa      1680
     cgcccgacga ccacggcgca tctgaacgtg cacaccccgg acgctagggg taagtacgct      1740
     cctccacgac ctaaatgttc tgcatgccag ggagagtgtg tcgcgctgga cgaatgcgag      1800
     cgctttcgaa agatgaccgt tgctgctagg aaggaccacg tacgagaaag taaactgtgc      1860
     cgtaagtgtc tcaaattcca caggggttgg tgtaacgtaa agacgacttg tgggttgaat      1920
     ggctgcgagg caatgcacca caagttgttg catggagccc taagtgtagt gaacgaagcg      1980
     gagaagcact gcctgacaca ctccgcctca aacgaccaca ccctgtttcg atatgtaccg      2040
     gtcacggtgc atggcaacaa tggcagaacc gtcaaaacat tcgcgtttct ggacgaaggc      2100
     tcgtcggcga catttatgga ccatagtctt ctggaggagt tgggcttatc cggtttatca      2160
     aaaccgttaa gtctaaggtg gacaggcgac accaccagag aagaaacgac gtcagtgcaa      2220
     ttgccggttc gaatttccgg tgagtaccaa ggagcaatag tgcatgagtt ggcgaaagtg      2280
     cacacggtta aaaatctggc gttgcctgcg cagtcggtta gcactaatca attgggagcc      2340
     gtttatccgc acctgaaagg gctacctctg acctcctatg ttaatgccac acctcggata      2400
     ttgattggcg tggataactg tcgactgggg aagccgctga aatgtgccga aggacgggtt      2460
     aatgaaccta ttgcaacaaa aacgcgtctg ggttggattt tgtatggacc gtgtcctatt      2520
     gcaactatta acgtggccga aagccacaga agcttccata tttgcagcag tgacgataac      2580
     atggatggta cactgacagc cgaggtcaag gcttttttct cactggactc tctcggaatt      2640
     gttaagctcc aaaatccgct taaatctaag gatgacgaac gcgctttgga gatactccgc      2700
     aaggaaacca agctgcaggg cgatcgattt gtaacgggct tgttgtggaa gtacgacgac      2760
     atccgcctgc catgcaacaa ggctgcagca ctaaaacgtc accagaccct gaaaaagaag      2820
     atggaaaaag atccggaatt agcggttgca gtgaacgcga aaatgagcga ttacatccag      2880
     aaaggctaca ttcgacgttt aagcgcctct gaagcagaaa acaaacagct caacgactgg      2940
     ttcctgccga tatttcccgt aactaaccca aacaaacccg gcaaaatccg tatggttttt      3000
     gatgcagcgg ccaaggtgag tggagttagc ctcaattcct ttctcttacc gggtcccgat      3060
     ctactcgcgg ggctactctc tgttctcttt aaattcagag agtatcgtat agcggttgta      3120
     ggagacattc gggaaatgtt tcatcaggtg acgatgcgca agcaggacca acgaagccag      3180
     atgatctttt gggatggaga cgaacctcac ggcgatccag ctgtatatgc agttacagtg      3240
     atgacgttcg gagctgcttg ttctccgagt agcgcgcagt tcgtgaagaa tcgtaacgcg      3300
     gatcgattcg aaaaacagta cccacgagcc gcactatgca tcagagacga gcactacgtg      3360
     gacgacatgc tcgtaagcgt cgagacggaa gtagaagctg taacccttgc aaaagaagtc      3420
     cggtacgtac acgcgcaagg aggtttcgag attcggaact gggtatcgaa ttcgacgtta      3480
     gtagtgaacc agcttcaagc gcaagcagaa caacacaagg gcatcaacat gggctacgat      3540
     ttaaccactg aaaaggtgct cggtatgtgg tgggatacgg cgtcagatac cttcaccttc      3600
     cgcctctccg gacaatttaa agagaagctg caagccggaa cgacaagcgt gacgaagcgg      3660
     aacctacttc ggatcctgat gagtgtctac gaccccatgg gcttactcgg actgttcttg      3720
     atgttcttga aggttctgct gcaggagatt tggcgttccg gaatagggtg ggaccaggag      3780
     ctggatggtc atttggcgga aaaatggagg acgtggcaaa gtgtgctgcc tgagatccag      3840
     aatgtaaaaa tcagccgatg tcatcgcaga ctcacgtcga tccgagccag ggtacagtta      3900
     cacgttttct gcgacgcgag tgaaacgggc atggctgcgg tcgcgtatct gaggttcgag      3960
     gaagatgaag tgatagaatg cgctcttgtg ggctcgaaaa ctcgtgtggc accgatgcgt      4020
     ttcgtctcga taccgcgatt ggaactacag gcagcagtga tcggtgcacg actagctgct      4080
     actatcatcg cttcgcatcg gttaaatatc tcgcgtacgt tgttttggac cgattcacgg      4140
     aacgtgttga gctggctgcg ttcggatcat cggcggtaca accagttcgt agcatttcgc      4200
     gtcggagaac tgcttgaaac gacagacgta gagcagtggc gctggatttc gacaaagcta      4260
     aacgtagccg acgacggtac aaagtggacg agaacaccgg atctttcgcc tacaagtcgc      4320
     tggttcaccg ggccgagctt cctatggaac tcggaatcgc tatggccggg ttacgaaatg      4380
     cctcctacaa atacaccaga agaactaaga cctagcgtgt tgcatcacag cgtagtagat      4440
     cctctcgtcg atttccaccg tttctccaag tggaaaaggc ttctgcgaac ggtggcgtat      4500
     gtggtaagat ttgtagctaa tattcgtcgt gccatgcaaa aggatgtcat tttaggaggg      4560
     ccgctaatac aagaagagct cgctcaggct gagcgcatcg taatcaacca aatacaggcg      4620
     gacgtgtacg catacgaaat acgctgcttg aagaagacga actctcagtt acatccgtgg      4680
     aagaccaaag tggagcagaa tagctcgctg tacaaactat caccggtact ggacgaacat      4740
     ggactaataa ggatgcgagg tcgccttgcc gagacgttat ctatcagcga aacactcaga      4800
     caaccgataa tcctcccgcg gaagcatcgt ggtaccgagc tgctaatact cgattatcac      4860
     gaacggtaca aacactgtaa ccaccgtaca gttgttagcg agctgcgagc gcggtattat      4920
     ataccccgtg tgctaggtga gtacaatcgc gtgcgcaact cctgtcagcg atgtaaggta      4980
     gacggagcca aaccggagtc tccttcgatg ggaaatatcc cacatcaacg tactgcagtc      5040
     gggcagcgag cgttttcctt tacaggcgtc gactatttcg ggcccctcct agttgccgtg      5100
     ggaagaagag tggagaaaag atggggagtc ctgtttacct gtctcacatc ccgagctatc      5160
     cacctagaga tggctcactc gctgaccacg gcgtcttgca taatggctat tcgacgcttc      5220
     atagctcggc gtggtaagcc cttagagatg atcagcgata gagggacaaa cttcgtcgga      5280
     tcagcccggg aacttgagga agcgcttcga gccgtggacc acgatgcgct gatggttgaa      5340
     ttcactggcc ctgagatgaa ttggagtttt aatccgcccg cggctccaca cttcggcgga      5400
     tgctgggaga ggttggtccg ctctgtaaag aaggtaatgg gtcaatttga tctcccgagg      5460
     aagcccacgg acgaggtgct gatgtcaacg ttcgcagaaa ttgagctcat cattaactcg      5520
     cgcccactca cttacgtacc gctgaacgat gagatggaca ccccgctgac gccgaatcat      5580
     ctactgctcg gaagctctaa cggctgcaag ccgccctgcg tatttgccga tggcgaggcc      5640
     gttataaaat cgtcctggag ggctgctcaa cacaatgcgg aagtgttttg gaagcgatgg      5700
     gtagccgact accttcccat gctgactcgc agaacgaaat ggtttaaaaa cgtacgtccg      5760
     attcaagtag gtgatatcgt aattattgtc gacaacagtt taccgcgaaa cagttggccg      5820
     aaaggacgag tgattgaggt agtcagggct aacgatggcc aagtaaggca agcgagcgtg      5880
     caaactagta acggcatatt caaaagacct gcaacaaaac tcgcgttatt agacgttaag      5940
     ccaaaaatac ttacttgcga tatccaggat aagtagggaa aagaacgtta aaacactata      6000
     cactaaataa cgaaatcgta agcgaaaaag agtgccagtg acaggaacta gagtgagtgg      6060
     aaacggatcc cctcactgcg ggggacaa                                         6088
//
ID   BEL-20_AnFu-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-296
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 724-724 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 296 BP; 90 A; 61 C; 65 G; 80 T; 0 other;
     tgttgtaaac aatatttgtt tacgcctacc gtcaccgtca ctgttgtcgt ttatgtcgac        60
     cgatcgaccg atccaccacg ttctatatag atctcgatag ggcgatcacc gataggcaca       120
     ccgagaaccg tggtgaattt atacgagaag actgcaacgg gataaaaaga aggatcgggc       180
     gaagaaagag cccattttta ttgtagaaag cgaacgagtg aataaaacga actaattttt       240
     tggttcgcgc aagcgtccct aataaactga agtaatattc gtgttctttt tctaca           296
//
ID   BEL-20_CQ-I repbase;    DNA;    INV; 6636 BP.
XX
AC   AAWU01039777;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_CQ_;
KW   BEL-20_CQ-LTR; BEL-20_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 193-193 (2011).
XX
DR   Genome; AAWU01039777; Positions   22799   16164.
XX
CC   Positions [5706-6266] - Integrase core
CC   'GGCAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..6587
FT                 /product="BEL-20_CQ-I_1p"
FT                 /translation="MASNPRKSFVRQTRSMTRAAQEAANLQIGDAQDDAAK
FT                 PFEPSVVEPERGDEQDCAGCTRPNNAELYMVRCEKCELYFHFSCANVTTAT
FT                 VNQPPFVCRTCVPFRPRSTRSSGSHVSSTRSARIALELQQMEEQFRIQEAL
FT                 TKERLAQLERQYLYSSKKYALLREQEEDGGRSVRSRDSRASTSRVEKWINA
FT                 QAETGNTGPGVNKETTESDDHVQPLSEDKADSLHVKFTSTPLASPNASFNE
FT                 SPYVSLSISSLLPDSLEESSEKSIPEGPKDPGQTAAEIPPSEVPEPPTTME
FT                 SMLKLLQISLGKPQNTGAIPKILKVTSTAFEEWRNSMQRKDLDPIPEELSE
FT                 ETKKNEQNLLVLLQQLEDQRAEDQQLQRQREEQLKRKLQQQEREQAKQKQE
FT                 LQRRLQQVEAEQKEEMQRLLQQQQRELAEQKRELKQRLKEQKQQQAKQQEE
FT                 LDRLRELERLQKLAESRDKNHSSAAGRNGTVDKSRSTESTTGTTSVPRVDD
FT                 DLPPPSNERSRASANFGSSSVRSSRSSSSRSSTLTTPSVVPSVESFPSLVP
FT                 PLPAPPPYQGPTSQQIAARQVVNKELPVFTGNPVDWPIFISSYNHSTLTCG
FT                 YTDNENLLRLQRAIQGRAREEVSSLLLNPSTIPQLLTSLKLLYGRPEQIVH
FT                 TMIEKVRATPAPRADKLESLVSFGLVVHNLCGHLKAIGMEKHLSNPILLHE
FT                 LVAKLPSNVMFNWALYQEQLPEVDLNVFGDYMSKIATATSGVTLFAAKAAK
FT                 DDFRPKKEKAAYVNTHSTAEQGQRKGDDEIKEKPTDRPSSNIKVCPMCDNS
FT                 GHLAANCSKFSKLCLDDRWKLVKEKRLCRRCLVAHSRWPCKSDPCGVQGCQ
FT                 KKHHPLLHYEQAPTEAKRSEPATSGVVALHRQPTISTLFRMLPVTLYGKKG
FT                 KVNTFAFLDDGSSVTLLERKLAATLGLEGKQASLCIHWTSGIKKNFSETRE
FT                 VELEISGADRPQRFVASNVYTVDKLGLPEQTMDVAAMAEEFAYLQDLPLLS
FT                 LQSAVPGILIGLNNVHLLATLKLREGRKGEPIATKTRLGWTVYGSMPAATQ
FT                 SFAHRQFHISDEQAEVDLHEYVKSFFAVESLGVMAVPSEESVDDQRANKIL
FT                 SETTKRVEGGRFETGLLWKQDYVEFPDSRPMAEKRMKCLERRLGRDPALYD
FT                 QVRKQIADFQSKGFAHKATAAELDTFDPRRTWYLPLGVVLNPKKPGKVRVI
FT                 WDAAAKVDGVSLNTMLLKGPDLLTPLLSVLFQFRERQVAICADIEAMFHQV
FT                 KIREPDRSAQLFLWRDSPDKPLETMVTDVAIFGATCSPAHSQYVKNLNANE
FT                 HEADHPKAAAAIRNKHYVDDYLDSVDTADEAVAMALEVAEVHAKAGFHIRN
FT                 WISNDKTVLARIGAVNPTTVKNFVIEKENGFERLLGMVWLPDEDMFSFALS
FT                 LREDNMKLLTGEVAPTKTQLLSIVMSIYDPNGLVAVFVIHGKILVQDVWRS
FT                 GVGWKDKIPEKLIGRWKQWIALLRKIETVRVPRCYFKDYEPASLKTLQLHV
FT                 FVDASEQAYSAMAYFRLEDRGQVRCSLVATKTKVAPLQLLPIPRLEVQSGV
FT                 TGSRLRKTIEDGHSLPISKVVFWSDSKTALQWIRSTDLRRFRPYVAFRVNE
FT                 ILSLSKAAEWRYCPSRMNVADEATKWGKKGPTFDPDAQVYVCHKFIYDQEE
FT                 DWPEDCLERVEATEELRPAFMFSHFVVMPIIRLELFSRWERLLRMVAYVHR
FT                 FLARRLKLKQETCPGALTREELQKAERSLWRLAQSDAYPDEVATLNQNLLV
FT                 PAEKRECLETSSSILKLSPLLDDSGVLRAGSRLEAAEFAAFDAKFPVILPN
FT                 KHRVTWLLVDSYHRRFRHANNETVVNEIRQKFNIPKLRVLIRQVASKCCFC
FT                 RIKKAIAVAPMMAPLPRVRLSPFVRPFTFTGVDYFGPVLIKVGRSVAKRWV
FT                 ALFTCLTIRAVHLELVASLSTDSCKKAIRRFIARRGAPQEIYSDNGTNFQG
FT                 ASGELSKELAKVNHNELSSTFTDIHTQWRFNPPAAPHMGGCWERMVRSVKA
FT                 ALGVIPVERKLDEESLVTLLAEAEHMVNSRPLTFVPLESADSESLTPNHFL
FT                 MLSSSGVQQAVKDRVGVGAAIKNSWNSIQHALDEFWCHWVKEYLPTIARRT
FT                 KWFEEVRPIKEGDIVLVVDEGHRNGWLRGRVARTYPGKDGRVRRADVQTSK
FT                 GQVGSAGRW"
XX
SQ   Sequence 6636 BP; 1603 A; 1848 C; 1954 G; 1231 T; 0 other;
     gaaactgaaa gaatttattt acgatggcct ctaatccccg taagtcgttc gttcgccaga        60
     cccgctcaat gacgcgcgcg gctcaagaag cagctaacct ccaaattgga gacgctcaag       120
     atgatgcagc gaaaccattc gagccgtctg tcgtcgaacc ggagcgaggg gatgagcagg       180
     attgcgctgg atgtaccagg ccgaacaacg ccgagctgta catggtgcgg tgtgaaaagt       240
     gcgagctgta cttccacttc tcgtgcgcga acgtcaccac cgcaaccgtc aatcagccgc       300
     cgtttgtgtg ccgtacttgc gtgccctttc ggccaagatc tacccgttca tcgggctccc       360
     atgtgagcag tactcgttcg gcacgaattg ctctagaact gcagcaaatg gaggagcagt       420
     tccggatcca ggaagcgctt acgaaggaac gactcgcgca gttggagcga cagtacctgt       480
     acagctcgaa gaagtacgcg cttcttcggg aacaagaaga agatggggga cgtagtgtcc       540
     gtagcagaga cagccgcgct tcgacgagca gggttgagaa gtggatcaat gctcaggctg       600
     agaccgggaa caccggtcca ggcgtcaaca aggagacgac cgagtctgac gatcacgtcc       660
     agccactgag tgaggacaag gccgatagtc tgcacgtgaa gttcacgtct actccgctcg       720
     cttcgccaaa tgcttcgttc aacgaatcgc cgtacgtttc cctctccatt tcctccctat       780
     tgccggacag tctcgaggaa agcagcgaaa agtcgatccc tgagggaccc aaggaccccg       840
     ggcagaccgc ggctgaaatt ccacccagcg aggttccaga accacctacc accatggaaa       900
     gcatgctcaa gctgctgcaa atctcactgg ggaagccgca gaacaccggt gctatcccga       960
     agatcctcaa agtcacctcg accgctttcg aggagtggcg aaacagcatg cagcggaagg      1020
     atctcgaccc gattccagaa gagctgagcg aagagacgaa gaaaaacgag caaaacttgc      1080
     ttgtgctcct tcagcagctc gaggatcagc gcgccgagga ccagcagttg cagcgccagc      1140
     gggaagagca gctcaaacgc aagctgcagc agcaagaacg tgagcaagcg aagcagaagc      1200
     aagaactgca gcgtcgactt cagcaggtgg aagcagagca gaaggaagaa atgcagcgtt      1260
     tactgcagca gcaacaacgc gagctggccg agcagaagcg ggagctgaaa cagcgtctca      1320
     aggagcagaa gcaacagcaa gccaagcagc aagaagagct tgaccgtttg cgagagctcg      1380
     agaggcttca aaagctggca gaatctcggg acaagaacca ctcgtcggcg gcgggccgca      1440
     acggcacggt cgacaaaagc cgatcaacag aaagcaccac aggaacaaca tctgtaccac      1500
     gcgttgacga tgacctgcca cctccatcta acgagcgatc tcgcgcctct gcaaactttg      1560
     gcagttcttc cgtaaggagc tctcgatctt catcttcaag gtcgtctact ttgacaacac      1620
     cgtcggtcgt accttccgtt gagtcattcc cctctctcgt gccgccgctg ccggcaccgc      1680
     ctccgtacca aggaccgact tcgcagcaga ttgctgcacg tcaggttgtc aacaaggagc      1740
     tcccagtctt cacagggaat cctgttgact ggccaatctt tatcagcagt tataaccact      1800
     ctacgctgac gtgcggatac accgacaacg agaacctgtt gcgactgcag cgtgcgatcc      1860
     aggggagggc gagagaagaa gtgagcagcc tgctcctcaa tccgtcgacg ataccgcaat      1920
     tgctgacctc tctgaagctg ctgtacggac gaccggagca gatcgttcac acgatgatcg      1980
     agaaagtacg cgcgaccccc gcgccgagag cggacaagct ggagtctctc gtctcgttcg      2040
     gtctggtggt ccacaatctc tgtgggcact tgaaggctat tggcatggag aagcacctgt      2100
     cgaaccccat tttgctgcac gagctcgttg ccaagttgcc ttccaacgta atgttcaatt      2160
     gggcactcta ccaggagcaa ctgccagaag tggacctcaa cgtgttcggc gactacatgt      2220
     cgaaaatagc gaccgctacc agcggcgtga cattgttcgc tgcgaaggct gccaaggacg      2280
     atttccggcc caagaaggag aaggcggcgt acgtcaacac gcactcgact gccgagcaag      2340
     gtcagcgcaa gggtgacgac gagatcaagg agaagccgac ggaccgtccg tcttcgaaca      2400
     tcaaggtgtg cccgatgtgc gacaacagcg gccatttggc ggccaactgc tcgaagttca      2460
     gcaaactttg tctcgacgac cgttggaagc tggtcaagga gaaaagactt tgtcgtcgct      2520
     gtctggttgc ccactcgcgc tggccgtgca aaagcgatcc ctgcggagtc caaggttgcc      2580
     agaagaagca tcatccgctg ctccactacg aacaagcacc cacggaagcg aagcgcagcg      2640
     agcccgcaac tagcggcgta gtcgcactgc accgtcaacc gacgatatca acattgttcc      2700
     gtatgttgcc cgtcacgttg tacggaaaga aagggaaagt aaacacgttc gcctttctcg      2760
     atgacggctc gtcggtgaca ctcctggagc ggaagttggc ggcaacccta ggcctggaag      2820
     gaaagcaagc atctctgtgc atccactgga catccggcat caagaagaac ttctcggaga      2880
     cgcgggaggt tgagctggag atttctggcg ctgatcgtcc gcagcggttc gtcgcgtcga      2940
     acgtgtacac ggtggacaag ctcggacttc cggaacaaac gatggacgtc gcggccatgg      3000
     cggaggagtt cgcgtatctg caggacctgc cgctattgag cttgcagtct gcggttcccg      3060
     gaatactcat cggtctgaac aacgtgcacc tgctcgcaac actgaagctg cgggaaggac      3120
     gcaaaggaga accgatcgct accaaaacgc gtctcggttg gacggtctac gggagtatgc      3180
     cggcggctac acagtctttt gcccaccgcc agttccacat ctccgatgaa caagccgaag      3240
     ttgacctgca cgaatacgtc aagagcttct ttgcggttga aagcctcgga gtcatggcag      3300
     taccgagtga ggagagcgtc gacgaccagc gtgccaacaa gattctgtcc gaaactacca      3360
     aacgagtcga aggtgggcgg tttgaaactg gccttctctg gaaacaggac tacgtggagt      3420
     ttccggatag cagaccgatg gcggagaagc ggatgaagtg tttggagcga cgcctgggac      3480
     gagatccggc actgtacgat caagtacgaa agcagatcgc ggacttccag tcgaaaggtt      3540
     tcgcgcacaa ggcgaccgct gcggaactgg acaccttcga ccctcgccgg acctggtatt      3600
     tacccctcgg agtagtactg aacccaaaaa agcccggcaa agtgcgcgtg atctgggacg      3660
     cggctgccaa ggtcgatggc gtgtccctga ataccatgct tttgaagggg cccgacctgt      3720
     tgacgccgct gctgtccgtg cttttccagt tcagggagag acaggtcgcc atctgcgcag      3780
     acatcgaagc catgtttcac caggtgaaga ttcgggaacc cgatcgcagc gcgcagctgt      3840
     tcctgtggag ggattcgccg gacaagccgc tggaaaccat ggtgaccgac gtcgctatct      3900
     ttggggcgac gtgctcccca gcccactcgc agtacgtgaa aaatctcaac gctaacgaac      3960
     acgaagcaga tcacccgaag gcggcagcag cgattcgcaa caagcactac gtcgacgatt      4020
     acctcgacag tgtcgatacg gcggacgaag cagttgcgat ggcgctagag gtagccgagg      4080
     ttcacgcgaa agccggattc cacatccgga actggatctc gaacgacaaa accgtgctgg      4140
     cgcggatcgg agcggtcaac cctacgacgg tcaagaactt cgtgatcgag aaggagaacg      4200
     gattcgagcg tctgctggga atggtgtggc tgcccgacga agacatgttc tcgttcgcgc      4260
     tgagcctgcg agaggacaac atgaagctgc tgactggaga ggtggcgccg acgaagaccc      4320
     agctgctgag catcgtgatg agcatctatg acccgaacgg gttagtcgcc gtcttcgtca      4380
     tccacggaaa aatactcgtg caggacgtgt ggcgatccgg cgtcggctgg aaagacaaaa      4440
     tcccggagaa gctcatcgga cgctggaagc agtggatcgc gctgctgcgc aaaatcgaaa      4500
     cggtgagagt tccacgttgc tatttcaagg attacgaacc agccagcctg aaaacgttgc      4560
     aactccacgt gtttgtcgac gccagcgagc aagcttactc cgcgatggca tactttcggc      4620
     tagaggatcg cggccaagtc cggtgctcac tggtggcgac caaaacgaag gtcgcacctc      4680
     tacagctgct tcccatccca cgtctcgaag ttcagtcggg cgtaactgga tcgcgtttgc      4740
     ggaagaccat cgaggacgga cactcactcc ctatttcgaa ggtcgttttc tggtcggact      4800
     ccaagacggc actgcagtgg atcaggtcaa ccgacctccg ccgatttcgc ccgtatgtgg      4860
     cgttccgggt caacgagatc ctgtcactgt ccaaggccgc cgagtggaga tactgtccat      4920
     cgcgcatgaa cgtcgccgac gaagctacga agtggggcaa aaagggacca actttcgacc      4980
     ccgacgcgca agtttacgtc tgccacaagt tcatttacga tcaggaagaa gactggcccg      5040
     aagactgcct cgagcgggtt gaggcgacag aagaactcag gccagcgttc atgttcagcc      5100
     acttcgtggt catgcccatc attcgactgg agctgttttc gcgatgggaa cgcctgctga      5160
     ggatggtcgc ctacgttcat cgctttctcg cgcgcagact aaagctgaag caggaaacct      5220
     gtccgggcgc gctgacacgt gaggagctgc agaaagcaga acgaagcctg tggcgcttgg      5280
     ctcaatccga cgcttatccg gacgaggtcg ccacgctgaa ccagaacctg ctagtgccag      5340
     ccgagaaacg ggagtgtttg gagacgtcga gcagcatttt gaagttgtcc cctctgctgg      5400
     acgacagcgg agtgcttcga gctggaagtc gcttggaggc cgccgagttc gccgcgttcg      5460
     acgccaagtt tcccgtgatc ctcccaaaca aacatcgcgt gacctggctg ctcgtggact      5520
     cctaccaccg aaggtttcgc catgcaaaca acgagacggt ggtcaacgag atacggcaga      5580
     agttcaacat accgaagctg cgggtcctga tccggcaggt ggcgagtaaa tgctgtttct      5640
     gccgcataaa aaaggccatc gcggtggcac ccatgatggc accccttcca cgtgtgaggc      5700
     tgtccccttt cgtgcgcccg ttcacgttca cgggcgtgga ctacttcggc ccggtcctga      5760
     tcaaggttgg acgcagtgtt gcgaaacgct gggtggcgct tttcacctgc ttgacgatcc      5820
     gcgcagttca cctggagctc gtcgcaagct tgtcaacgga ctcgtgcaag aaagcaatcc      5880
     gccggttcat cgcgcgacgt ggagcgccgc aggagatata ctcggacaac ggtacaaatt      5940
     tccaaggagc cagcggagag ctgtcgaagg aattagccaa ggtcaaccac aatgaactca      6000
     gcagtacatt caccgacatc cacacccagt ggcgattcaa cccaccggcc gcgccgcaca      6060
     tgggtggctg ctgggaacga atggtaagat ccgtgaaggc tgcactgggc gtaatcccgg      6120
     tggaacgcaa gctggatgag gagtcgctgg tcaccctact agcggaagcg gagcatatgg      6180
     taaactcgcg ccccctgact ttcgtgccgc tggagagcgc agacagcgag tccttgaccc      6240
     ccaaccattt tcttatgctg agttcgagcg gcgttcagca ggccgtcaag gatcgggtgg      6300
     gcgtaggcgc ggccatcaag aacagctgga acagtattca gcacgcactg gacgagttct      6360
     ggtgccactg ggtgaaggaa tacctgccga cgatcgcgag aaggactaaa tggttcgaag      6420
     aggtgagacc aatcaaggag ggcgatatcg tgcttgttgt ggacgaagga catcggaacg      6480
     ggtggttgag aggacgcgtt gcaaggacgt atcctggtaa ggacggcaga gtacgtcggg      6540
     cggatgtaca gacatcgaag ggtcaagttg gctctgctgg acgttggtga cgctgaggat      6600
     tctggtgcag atcatcatgc gacacgtggg ggagga                                6636
//
ID   BEL-20_CQ-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   AAWU01039777;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_CQ_;
KW   BEL-20_CQ-I; BEL-20_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-481
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 194-194 (2011).
XX
DR   Genome; AAWU01039777; Positions   16163   15683.
XX
SQ   Sequence 481 BP; 167 A; 95 C; 84 G; 135 T; 0 other;
     tgttgcgagc acaccgtgcc gactgtgctg actgtgccga ccgtacccct cgaatcattg        60
     gccaaacgcg acaaactcaa aaagactata gaatagaacc gtcacgctga cacagtagtt       120
     gaccgtagac gtagagtaga gatagagaag aattttgttt tcccattatc agtcctcaat       180
     cagataccta aggaattaaa ctgattgccc ttttggtaag aaatttattg aattatttgt       240
     gcttattttg ctaattaaaa ttatcttaga ttaaggaaat taaaacgctc taagaagcct       300
     acaatttcaa aagttgtctg ttgcgatttg aattaaacta ggagactaaa ttgtaagtaa       360
     cccgaccgaa catttgtgaa aattattaca attaaatcct aattgcagct ttcagctata       420
     acaccatcta aaaaaaggag ttttgctaaa aagaccctcc gaaacatcaa tcgtcgcaac       480
     a                                                                       481
//
ID   BEL-20_DAn-I repbase;    DNA;    INV; 5890 BP.
XX
AC   AAPP01019820;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DAn_;
KW   BEL-20_DAn-LTR; BEL-20_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5890
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019820; Positions   63525   69414.
XX
CC   Positions [4966-5520] - Integrase core
CC   'ACAAA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1106
FT                 /product="BEL-20_DAn-I_4p"
FT                 /translation="MDDEIRNESGDLNIGVEDGSWRSSGCSLTGPFAGFDN
FT                 GTLSGQTVTNLGQFVSLEGTSTPISTDPTNHVVSQPHGEIATQIFEHHTNT
FT                 GISRNVHWVTAPNMQERTARSPIPTTVIGQSIDAVQAAPTMSAAGFIPSNA
FT                 TQTVPMWNTAGYLENDVAHTAPPKGAAVCISYSAAQTAPPQENDVAHTAPP
FT                 KGAAVCISYSAAQTAPPQNAAIWMENNAAKFGFQGNSAGFVPSAARIGLTP
FT                 NVNPNTAGSNPYSAAFNTGGIGGHMPPFSNTQFVHAGSCTTMLTPAQVAAR
FT                 QVISRELPAFTGKPEEWLLL"
FT   CDS           1007..2005
FT                 /product="BEL-20_DAn-I_3p"
FT                 /translation="MYYNVDASASSGATSHIARITCIYWKAGRVAAFISNY
FT                 EQSTERCGFSNEENLIRLQKCLKGAALEAVRGKLMVPAMVPYAIGTLRMLY
FT                 GRSEIVHASLQRKLKDEPAIKPNNLESVIRLALAVQNYCATMLSVGLQEYL
FT                 NDSTLLSELVAKLSSWGRHRLAAGGGNLVTFDNWLFGVAMCATMVTPYDYQ
FT                 TTEKDKGSRHIKERLLVHNIAEGSSKDKQKIEDPTKSLCPVCDGEHDLSEC
FT                 EGFLSMTIRTRLEVIKAKRLCFGCFGNHTARNCRVKKPCNFDGCKLLHNEL
FT                 LHFCPTIKFDVDSEELKKEETKESALFFHGRQNGYCSVIYP"
FT   CDS           join(2077..3024,3028..5763)
FT                 /product="BEL-20_DAn-I_1p"
FT                 /translation="MERQLADELGLDGPEEQLCLKWTGDLTQTETKSKVVC
FT                 TSVSSGDHPHLRYVLKGVRTVSNLDLPVQSIDDQMLNNHQHLKSVPVSTYI
FT                 GVKAQMIIGLDHIKICVPLEVREAENYELVAVRCKLGWSVYGRYGLDEIIP
FT                 PRVLHICQCSGGTRTLDEAVKAYFSLDSIGVSVPLKPLRSKEDERSLKIMN
FT                 DTTKYIANERRWETGLLWRYENVNLPDSYPMALKRLKCLESKMIKDPDLSN
FT                 FLIETMQKYAEKGYIRKLQRGELATSRCSWYIPVFVVTNPNKKKKRLVWDA
FT                 AAQVNGLSLNDTLMKGPDLLVSLPVLLRFRERPVAVTGDIREMFHQIKVRA
FT                 SDQSVQKFLWRNGENDRPPDTFVMQVMTFGASCSPSLANFILKKNAEQFGD
FT                 NCPDAIRTICQNTFVDDWLESVDTDDEMIQLANNVKMIHAKGGFEMKNWLS
FT                 NSKSVLQSLNSSPAASPKYLGSEQELQEKVLGMWWLPESDMLTFVIRPELL
FT                 QKSVTSTHTKRRVLSIVMSIFDPLGLLGFFNIRAKIILQNIWRSGVSWDDT
FT                 IKDSDENDWRAWQSSLSKLSNLRIPRYMYGSKAAENVQLHIFVDASLDAYA
FT                 AVAYLRVVRGGEIRCSLVASKNRVAPLKPISVPRMELMAAILGLRLSKFLE
FT                 AELSIRIERRIFWTDARDVLFWIKSDVRKFPQFVAVRVGEILEGSEVIDWR
FT                 WIPSELNVADEGTKWTKNCEMTSSIRWFTGPEFLSQNESRWPSQIGTPVSS
FT                 DDTLLYHADMVRTDPSPITSIMPNPLCFSRLERLRGAQRRVLDFIRYIQVR
FT                 QPGPELKRILELKRNVEMDTVFIRACQEETFIDEIRCLKKDGRVSNRKSSI
FT                 FKCSPYLDESGVIRMQGRIEAIDNVEVDVKRPILLPRHHQVTYLIVEYYHR
FT                 KFHHLHGEIVVNEVRQRFWIPGLRALVKETVKKCVSCSIRRAQPLPPEMGY
FT                 LPKERISPYTLPFTYTGVDYFGPIEVAVGRRREKRWRVLFTCMTVRAVHLE
FT                 LVPSLSTDSFLLALKLFTARRGVPIKMLSDNGTNFRGASRVLAKEIERIST
FT                 LDVESKYPQMTFAFIPPGSPHMGGAWERMVRSTKSILLEILSNVVLREEVL
FT                 RGAFADVENTLNSRPLTYIPLESENSEALTPNHFLVGNSSGLRERGMMEVT
FT                 GHALAKQLRIAGQLADRFWKRWIREYLPTLTRRKKWFHPNPTPLAEDDLVL
FT                 VVDETSTEHLAKRNHYGC"
XX
SQ   Sequence 5890 BP; 1727 A; 1251 C; 1466 G; 1446 T; 0 other;
     ttctgaaata ctttgccatc cggaaaacca cgctgcaaga gtgcacggct tctggaaagc        60
     attcctttac caagggtgtg aaaggagtga ggacgtagta tacaggacta tttgaagcaa       120
     gatctgttga cgcattacca gccagtgaag agtggcgtca aatttctgaa atggatgatg       180
     aaattagaaa cgagtctggc gatttaaata ttggagttga agacggttca tggagaagct       240
     ctgggtgtag tctcactgga ccgttcgcag gattcgacaa tggaacattg tcaggacaaa       300
     cagtgacaaa cttaggtcag ttcgtgtcgc ttgaaggtac aagcacgcca ataagcacgg       360
     acccaacaaa tcacgttgtg tctcaaccac atggtgaaat agctacacag attttcgagc       420
     atcacacgaa cacgggtata tctcgaaatg ttcattgggt aacagctcct aatatgcagg       480
     aaagaactgc gcgaagtcca atcccgacca cggttatcgg tcaaagtatc gatgcagtgc       540
     aagcagcacc aacaatgagc gcagccggat ttataccaag caatgcaaca caaacagttc       600
     caatgtggaa tacggctgga tacttggaaa atgatgttgc acacactgca ccacccaagg       660
     gcgcggcggt atgcatatcg tatagtgctg cgcagacggc tccacctcag gaaaatgatg       720
     ttgcacacac tgcaccaccc aagggcgcgg cggtatgcat atcgtatagt gctgcgcaga       780
     cggctccacc tcagaatgcc gctatatgga tggaaaacaa cgcagccaaa tttggattcc       840
     aaggaaactc agcaggattt gtaccgtcag ctgctagaat aggtcttaca ccgaatgtca       900
     atcccaacac ggcgggttca aacccttaca gtgcagcatt taatactggt ggaataggcg       960
     gtcacatgcc gccgttttcg aatactcagt tcgtacatgc agggtcatgt actacaatgt      1020
     tgacgccagc gcaagtagcg gcgcgacaag tcatatcgcg agaattacct gcatttactg      1080
     gaaagccgga agagtggctg cttttataag taactacgaa caatcgacgg aaagatgtgg      1140
     atttagcaat gaagaaaatc tcatcagact tcaaaagtgc cttaaaggag ctgctctcga      1200
     agcggtacga ggaaaactca tggttccagc catggtacca tatgcgatcg gtactctaag      1260
     aatgttgtat ggacgttcag aaatcgtaca tgctagttta caacgtaagc tgaaagatga      1320
     gccagcaatc aaaccgaaca acctggagtc tgtaatacga ctagcactcg ctgtgcagaa      1380
     ttattgtgcc acaatgcttt cagtggggct acaggagtac ctaaacgact ctaccctatt      1440
     gagtgaactg gttgctaagc tgtccagttg gggcagacat cgtttagcag caggtggggg      1500
     caatctagtt accttcgaca attggctctt tggtgtagca atgtgtgcta caatggtgac      1560
     gccgtacgat taccaaacaa cggaaaaaga taaaggaagc agacatatta aggagcgctt      1620
     gctagtgcac aatatagcgg aaggttcgag caaggacaag cagaaaattg aagatccaac      1680
     aaaatcattg tgcccggtat gtgacggcga gcacgatctg tctgaatgtg aaggattttt      1740
     gagtatgaca atcaggacta gacttgaagt cattaaggct aaacgactat gtttcggctg      1800
     ttttggaaac catactgctc gaaactgtag agtgaagaag ccgtgtaatt ttgatggatg      1860
     taaattactg cacaatgagc tcctgcactt ctgccctacg ataaagttcg acgtcgattc      1920
     ggaggaactc aaaaaggaag aaacaaaaga gtcggcactg ttctttcatg gcagacaaaa      1980
     cgggtactgc tccgttatat acccataacc ttgtatagta aaacaaaaag agtgaatatt      2040
     tttgctctcg tggacgaagg atcctcctgt actctgatgg agcgacaatt agctgatgag      2100
     ttaggcttgg acggacctga agagcagctc tgtttgaaat ggaccggtga tttgacacag      2160
     actgaaacca aatcaaaggt ggtctgtacc agtgtttcct ccggtgatca cccgcactta      2220
     aggtatgtgc taaaaggtgt gcgcactgtg agcaatctgg acctgccagt gcaaagtata      2280
     gacgaccaaa tgctcaacaa ccatcaacac cttaaatcgg ttcctgtgtc aacgtatata      2340
     ggtgtcaaag ctcaaatgat cattggactg gaccatataa agatttgcgt accactagag      2400
     gttcgagaag ccgaaaatta tgaacttgtt gctgtgcgat gcaaactggg atggtctgtc      2460
     tatgggcgat atggactgga cgagatcatt cctccacgag tactgcatat ttgccagtgt      2520
     tcaggtggta ctcgaaccct tgatgaagcg gtaaaggcgt acttttcgtt ggactcaatc      2580
     ggcgtaagcg ttcctctaaa accactgaga tccaaggaag acgagcggtc gctgaaaatt      2640
     atgaacgaca ctacaaaata cattgccaat gaacgtcgtt gggagaccgg tctgttgtgg      2700
     agatatgaga atgtaaactt gcctgattct taccctatgg ctcttaaacg tcttaagtgt      2760
     ctcgaatcaa aaatgatcaa ggacccagat ttaagcaatt tcctgatcga aaccatgcaa      2820
     aaatacgccg aaaagggtta cattcgaaaa ctacaaaggg gtgagttagc cactagccga      2880
     tgttcttggt acattcctgt attcgtagta actaacccca acaagaaaaa gaaacgtcta      2940
     gtctgggacg cggctgcaca agtgaatgga ctatcgctga atgataccct catgaaagga      3000
     ccggatttgt tggtgtccct gccatgagta ctgttgcgat tcagagaacg ccctgtcgct      3060
     gtaacaggag atattcgaga gatgtttcac caaattaaag ttcgtgcctc cgaccagtcc      3120
     gtacagaagt tcttatggcg aaatggagag aacgatcgcc ctccggatac ctttgtaatg      3180
     caagtgatga cctttggcgc ttcctgttcc ccatccctgg ccaattttat actgaagaaa      3240
     aatgcagagc aattcggtga caattgtcca gatgctataa ggacaatttg tcagaatacg      3300
     tttgtcgacg attggctgga gtcggtggat actgacgatg aaatgattca actggctaac      3360
     aatgtcaaga tgattcacgc gaaaggcgga tttgaaatga aaaattggtt atcaaattcc      3420
     aagagcgtcc ttcaatctct caacagttcc ccagcagcgt ccccgaaata cctgggttca      3480
     gaacaagaac ttcaggagaa agttctgggc atgtggtggc ttcccgagtc agacatgcta      3540
     accttcgtaa ttcgacctga gttgctgcag aagtccgtaa ccagcaccca cacgaagcgt      3600
     agggtactga gtatagtaat gtcaattttc gaccccctcg gactactcgg attctttaac      3660
     attcgtgcca aaataattct tcagaacatt tggagatccg gtgtgagctg ggatgacaca      3720
     attaaagatt cggatgagaa tgactggcgg gcttggcaat cgtccttgtc caagctgagt      3780
     aatttgcgta tcccacgata catgtatggc tcaaaggctg ctgaaaatgt ccaactgcac      3840
     atatttgttg acgcgagctt ggatgcctat gctgctgtag catacttgcg ggttgtacgc      3900
     ggtggcgaaa tcagatgctc ccttgtcgcg tcgaagaaca gagtcgcccc tttgaaaccc      3960
     atatcggtgc caagaatgga attgatggca gccattttgg gtctgcgact ttcaaagttt      4020
     ctggaggcag agctatcaat caggattgaa aggcggatct tttggacaga cgctcgagat      4080
     gttttatttt ggataaagtc ggacgttcgt aagtttcctc agttcgtggc cgtacgagtc      4140
     ggagaaatcc tagaaggatc ggaggttatc gattggcgct ggataccttc ggagcttaat      4200
     gtggcggacg aaggaaccaa atggacaaaa aactgtgaga tgaccagctc gataaggtgg      4260
     tttactggtc ccgaattctt atcgcagaac gagtcaagat ggccgtcaca aatcggaacc      4320
     cctgtgagct ccgatgatac actgctttat cacgccgata tggtgcggac ggacccgtca      4380
     cctattacct ctattatgcc aaatccgtta tgcttcagta ggctggaacg tctacgcgga      4440
     gcccaaaggc gagtgctgga tttcatacga tatattcaag ttcgacagcc tggacctgaa      4500
     ttgaaaagaa tactcgaact aaaacgaaat gttgagatgg acacggtctt tatacgagct      4560
     tgccaagagg aaacgtttat agatgaaatt cgctgcttaa agaaagatgg tcgtgtctca      4620
     aaccggaaaa gcagcatatt caaatgttcg ccgtatcttg acgagtcagg agtgattcgg      4680
     atgcaaggtc gaattgaagc tatcgacaat gtagaagtag acgtgaagcg accgatttta      4740
     cttccacgtc atcaccaagt aacgtatcta atagtcgaat attatcatcg caagtttcac      4800
     catctgcatg gagaaatagt cgtaaacgaa gttaggcaac gtttttggat accaggcctg      4860
     agagcactcg tcaaggaaac tgtaaaaaaa tgtgtaagtt gttccatcag acgagcacaa      4920
     ccactgccac cggaaatggg atatctacca aaggaacgta tatcaccata taccttgccc      4980
     ttcacgtaca ctggagtcga ttacttcggg ccaatagaag tcgctgttgg aagacgacga      5040
     gagaaaagat ggagagtatt attcacgtgt atgacagttc gtgcagtaca tttggaattg      5100
     gtcccttctc tttctacgga ttcatttcta ctggctctga aactatttac tgcgcggcga      5160
     ggggtaccta ttaaaatgct atcagataat ggaacaaatt ttcgcggcgc tagcagagta      5220
     ttggcaaagg agatcgagcg catatcgact ttggatgtgg aaagtaagta tccgcaaatg      5280
     acctttgcat ttattccacc tggatcaccc cacatgggcg gcgcttggga acgcatggtg      5340
     cgttcaacta agtcaatctt gttggagatt ctgtctaacg tcgttctgag agaggaagta      5400
     ctacgcgggg catttgcgga tgttgaaaac acgttgaact caagaccgtt gacatatatt      5460
     cccttggaat ctgaaaactc cgaagccttg acgccgaatc atttcttagt tggaaactca      5520
     agcggtttgc gtgaacgtgg aatgatggaa gtcactggac atgcattagc aaagcagtta      5580
     cgaatcgcag ggcaattggc ggatcgcttc tggaaaagat ggattcgaga atatctaccc      5640
     acgttaacaa gaaggaagaa atggtttcat ccgaacccaa ctccacttgc agaagatgac      5700
     ctagttttgg tcgtggatga gacgagcacg gaacacttgg ccaaaaggaa tcattatgga      5760
     tgttaattgt gctaaggatg gccaagttcg gagtgctgta gttcgacctg cagtaaagtt      5820
     ggccaaattg gacatcgtga gagatggtaa ttctcggcgt ggacactcag aagaattacg      5880
     aggtggggaa                                                             5890
//
ID   BEL-20_DAn-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   AAPP01019820;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DAn_;
KW   BEL-20_DAn-LTR; BEL-20_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-300
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019820; Positions   63225   63524.
XX
SQ   Sequence 300 BP; 102 A; 46 C; 61 G; 91 T; 0 other;
     tgttacgagg cgtacgatgt agccacgaag taacgggcca atttgaattt gtcggtgttg        60
     tataatttaa tttgaacgca gtcatgccca acactaaata ggaaaatagt gtaagaaaag       120
     tttcaaatgc cattagtaaa tgtaaagagc ggcaaaccac aagtgtaagc aagaaaagct       180
     tctattttat aattttctac atttataatt tttaaattta aataaagatt tcagcgtttc       240
     gttcataaaa gtcggcttga tttacgtgga aggctctagg tacctgggag tgtcccaaca       300
//
ID   BEL-20_DEl-I repbase;    DNA;    INV; 7562 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DEl-I;
KW   BEL-20_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7562
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7087-7087 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..1845
FT                 /product="BEL-20_DEl-I_1p"
FT                 /translation="MASSSIRSLLDEQQALGERIQSIIRNFKKDSESRKSK
FT                 PAYYTERLANLEGLWINFASRDEKIKNTLKGENIDHGYFNNNYFIEIKNLV
FT                 SEYQNIFSTNLSALQMETESITSTEEDLEIESMFREQRVLIDSLERIMSKI
FT                 TVETRQNFQTIISQNWNEIKRIHVQIHKKFKNPKELGYDDSRYLMAEDAII
FT                 SFQMSFGVEKRQESEASSYTTAGLPLPKVSIPKFDGNYLQWQQFHDLFKKM
FT                 IHESSLPTIQKMWYLKTNLTGEAERLIRHLSLTEKNYVTAWNMLQERFSNK
FT                 RVLCNTLLQKLLDQAPISSDGKGIKTLHDNVKETLSALNNIDITTDSWDPI
FT                 LLHILTKKLDRQTHLLYXQSLLNTRELQSVKEFLEFLEXRFLTLEAISSEK
FT                 PKKPITCAAGAETQKEIVLSVIKNTTHSCT"
FT   CDS           join(1752..2663,2528..2950,2886..7394)
FT                 /product="BEL-20_DEl-I_2p"
FT                 /translation="ETQKTDYMCSRGRDTKRDCFKCNKKHNTLLHLEKMSD
FT                 TLDSITAASVSGRKAGYILLATARIIVQGNNGQMAEFRALLDSGSQINAIS
FT                 ERAIQQLSLKTTSSRLKINGIGGKAHTSNSRVNVEIKSKNGDFTSRLEAMV
FT                 MPHIVSDQPTFSISTENWKIPNSITLADPQFGKPGKIDILLGAEHYFNIMQ
FT                 SEHLCLKKGLPRLHNTKLGWIIAGRISDQRSTSSVCAVLTEEEKVDEQLIK
FT                 FWELDNFQPFQKYYSPVENNVNPTFSRTFSAQRTQDLLSNCRFWSMHQRWG
FT                 RVVTLPRDGSYPKQCESHFLENIQRAKDSRFIVQLPFLEHASALGESRDIA
FT                 TRRFLSLEKRLQKDQAIKQGYIEFMKEYELLGHMKEVPLVNLPKSHYFIPH
FT                 HCVLKPDSQTTKLRVVFDASAVSSSGKSLNDLLHKDRPNSAKYIDVYFITV
FT                 MIYCTKIGPTVQNTLMSILLRFRLHKYVFTADIEKMYRQIWINPNDQQYQM
FT                 IVWRNDPSEKLRFYRLKTVTYGTKSAPYLATRCLEHLATKQLKQYPLGSSA
FT                 LKNDFYVDDCITGADTIQEALLIRTELDKILVSSGFKLRKWCANSNQLLQG
FT                 LNKDDIIPNVQLEDTTYEDCSIKTLGILWNPKIDKLCGKTQIATTTKITRR
FT                 DVVSEIFKIFDPLGLFSPVVVKAKIFMQSLTKEKFDYNEELPDHLQRQWIQ
FT                 FRDSLEALNDIKISRHVFEGKKPISKEIHTFVDASENAYAAAVYIRAVHKD
FT                 KRVTVQLLCAKSRLAPINTITLPRLELKAAVLGAQLTYNVKEQLSMQAIPT
FT                 YYWADSEIVLSWINSPTTIKDKFVASRITTIQETSLQKEWRHIPSEQNAAD
FT                 VASRGICGSKFASHSLWFFGPLFLYGPSTKWPAPFIAAKSERIIKTPNSSI
FT                 VTVKDDVLFYRINHRNSISKLLRIVAYVMRVKKRPRVKGATIQLEEMERAR
FT                 KVILRIIQERHFGTEYRSLKNCREVEKGSSLSTLTPFLDQDDLIRVGGRLE
FT                 AAELSFDAKHPILLPYGDQIVKLIFEKMHKDNMHCGVQALVAISRQRYWAI
FT                 RAKTIARSVVLNCVKCTRAKPKLLEQIMGNLPPLXVTQARPFXNSGKKPHT
FT                 AYIAIFCCFATKAVHLELVSDLTTEAFLAALRRFISRRGKCQTLHCDNATN
FT                 FVGARNKLQELEDAIFSEKAKQCIVESCIDKGVNFKFIPPRAPHFGGLWEA
FT                 AVKSAKHLLLKNVITANLTYEELETVIVEIEAILNSRPLVPMSTDPNDLTA
FT                 ITPGHFLIGEPLTAQADSEPSQQPQTLGQRWQAVSKLKHAFWKQWSTDYLQ
FT                 QLQQKQKWRRSSANIKEGELVLIKEDNTPVLQWPMGRIVKVFHGKDNFVRV
FT                 VEVKTAKGFFKRDIQHIAPLFAEEEPVCKHPLLENPEDRIVEENAPKRKKS
FT                 SGLSSMAMTLIVMLLLLPLTIAQSINVTKFVSRPGIFFEKVGNGQFATTDW
FT                 SIIVYYNLRPYWNDMNTFSMGVSKIGHLCTQFPQXEACTSLYHHFKHLEED
FT                 LQAENILLAKSRRQRAPLDIVGNIASSLFGVLDSTYANEMAKTITKVKGNE
FT                 KHLLNLLKNQTSLIDSTINVIKRDEISNSKRLKLIENYISDTESTKSVFNK
FT                 LSWYITLSTQLSILASDLQRVQAEIINVLTDIRHNTISPMLISPRQLKEQM
FT                 EQIHSHLRPGQMLPVHPDNILMAYQLMKGEGTIVKDHVIIKVNFPLISSQV
FT                 LDIYKLTPIPFLGKDEIHSIEIKSPFLAINXHRDEFVEMSEADLTLCQERA
FT                 KSDFICFNKQTMFSSEISCEMKLFHNKTDSSCKIVSTRKSFLWSGMYAKNQ
FT                 WIFATNESLKLSAVCLDGTSNIELQGSGYLTASPGCTIRNTLMTITTQEST
FT                 ETTLQASYARFGDSDLTESLPSNSNMTVVIDTQKLHFNKLLQRKMELFPQN
FT                 SFKLPHNLSNIEHHQIAIYIGLIF"
XX
SQ   Sequence 7562 BP; 2682 A; 1414 C; 1432 G; 2026 T; 8 other;
     tttggtgacc cccgactttg aacagaaaaa aaaaatttgt ttaaattgat acgtcaattt        60
     taaactcgca ttctcgatca ttgtttgatc acattataag ttcaagtcac cagcaataaa       120
     tttggtgacc accaacttta aaccgcaaaa attgtttaag ttgagacccc aatttaaaca       180
     cgcattcccg atcattgttt gatcacacat caacagcaac aatcacggta gtgattaact       240
     ggtctactag gcgaccgacc ataaaataga agttctcttc gcgaacgttt tttttactgc       300
     tatcaacttg gcgatagaca gtttataagc agattttcaa ggtcaacaag gcgaccaagt       360
     aatttctgcg atttgtgtac gattaacttg gcaatcaaaa cacacaacca aggacaagtt       420
     ttggtcaacc cggcgaacca aactttgcta aaaaaaaaaa aaactaaaga cttgaataac       480
     tgaccagttt tacaattatt ttataaacca cggtgtgagt cgaggcacat cattaacaaa       540
     attcctctta aaggtttatt ttataaaagt aaaatggcgt catcaagcat tcgctcctta       600
     ttggatgaac agcaagcgct gggcgagcgc atccaaagca taattagaaa ttttaaaaaa       660
     gattctgaga gcaggaagtc taagcctgcc tattacacag aaagattggc aaatctggaa       720
     ggcctctgga ttaatttcgc ttccagagat gaaaaaatca aaaataccct caaaggagaa       780
     aatattgatc acgggtattt taataataat tatttcattg aaataaaaaa tcttgtgagt       840
     gaatatcaaa atatattctc cacaaactta tccgcattgc aaatggaaac tgaatccatt       900
     acatctacgg aggaggattt agaaattgaa tccatgttcc gtgaacaaag agtactcatt       960
     gatagtttgg agcgcatcat gagtaagata actgtcgaaa cgcgccaaaa ttttcaaaca      1020
     atcatttcac aaaactggaa tgaaattaaa aggattcatg tccaaatcca taaaaaattc      1080
     aaaaacccwa aggaattagg atatgatgat tcacgatatt tgatggctga agatgccatc      1140
     atatcatttc aaatgtcatt tggcgtagaa aaaaggcagg aatctgaagc aagttcctat      1200
     acgaccgcag gattacctct gccaaaggta tcaattccaa aatttgatgg aaattattta      1260
     caatggcaac aatttcatga tttatttaag aaaatgattc atgaatcttc attacccact      1320
     atacaaaaaa tgtggtattt gaaaacaaac cttacgggag aggccgaacg cttaattcgg      1380
     cacttgtctc taacagaaaa aaattatgtg acagcatgga atatgttaca agagcgtttt      1440
     agtaataaaa gagtgttatg taacacgtta ctacaaaaat tgctagatca agcacctata      1500
     tctagcgatg gcaaaggcat aaaaacattg catgataatg tcaaggaaac attatcggca      1560
     ttaaataata tagatataac aacggacagc tgggatccga tcttacttca tatattgaca      1620
     aagaagttgg atcggcaaac tcatttactg tatgakcaat cacttttgaa tacaagagaa      1680
     ttgcaatccg ttaaagaatt tctggaattc ttggagcakc gtttcctcac actagaggcc      1740
     atttcttctg agaaacccaa aaaaccgatt acatgtgcag caggggcaga gacacaaaaa      1800
     gagattgttt taagtgtaat aaaaaacaca acacactcct gcacttagaa aaaatgtcgg      1860
     atactttgga ttccattact gcggcatcgg tgagtggaag gaaagccggc tatatactct      1920
     tagccactgc acgaataata gtccaaggaa ataatggaca aatggcggaa ttcagagctc      1980
     ttcttgactc tggatcacag attaatgcta tctctgaaag agcgattcag caattatcat      2040
     taaagaccac cagctcaagg ctaaaaataa atggaatagg tggaaaggct cacacatcaa      2100
     attctagagt taatgttgaa ataaagtcta aaaatgggga ctttacttca agactagaag      2160
     cgatggtaat gccacacata gtcagcgatc aaccaacatt ttcaatatca acggaaaatt      2220
     ggaaaattcc aaatagtata acgttggctg atcctcaatt tggaaaacca ggaaaaattg      2280
     atattcttct tggcgctgag cattatttta atataatgca gtcggaacat ttatgtctca      2340
     aaaaaggact gccgagacta cacaatacca aacttggttg gattatagct ggaaggattt      2400
     cggatcaacg atcaacatca tcagtatgtg cggttctcac agaagaagag aaagtggatg      2460
     agcagctaat taagttctgg gaacttgaca actttcaacc atttcaaaaa tattattcgc      2520
     cggttgaaaa caatgtgaat cccactttct cgagaacatt cagcgcgcaa aggactcaag      2580
     atttattgtc caactgccgt ttttggagca tgcatcagcg ctgggggaga gtcgtgacat      2640
     tgccacgcga cggttcttat ccctagagaa acggttgcag aaagatcaag caatcaagca      2700
     aggatacata gagttcatga aggaatacga actgcttgga catatgaaag aagttccttt      2760
     ggtgaatctg ccaaaatcac actattttat tccacaccat tgtgtgttaa agccagatag      2820
     tcagacaact aagttacggg ttgtatttga cgcatcagca gtatcatctt ctggcaagtc      2880
     attgaatgat ttattgcaca aagataggcc caacagtgca aaatacattg atgtctattt      2940
     tattacggtt tagattacac aaatatgtgt ttaccgctga cattgagaaa atgtataggc      3000
     agatttggat aaacccaaat gaccagcaat atcagatgat cgtatggaga aacgaccctt      3060
     cagagaaatt gagattttat cgactgaaga cggtcacgta tggcactaaa tcagcacctt      3120
     atttagccac aagatgttta gaacacttgg caacaaagca gttgaagcag tatcccctgg      3180
     gatcgtctgc tcttaaaaat gatttttatg tggatgactg cattactgga gcagatacaa      3240
     tccaggaagc tttactcatc cgaactgagc ttgacaaaat attagtcagt tcaggattta      3300
     aattgagaaa atggtgcgca aacagcaacc aacttctaca ggggttaaat aaagatgaca      3360
     taatccctaa tgtgcaattg gaagatacca catatgaaga ttgcagcatc aaaactcttg      3420
     gaatcctctg gaatcccaag atagacaaac tttgtggcaa aacacaaatt gctacaacaa      3480
     ccaaaataac aagaagagac gttgtctcag aaatattcaa aatatttgat cctcttggat      3540
     tattctctcc agtcgtcgtt aaagcaaaga tattcatgca gagtcttaca aaggagaaat      3600
     ttgattacaa cgaggaattg cctgatcatc tacaaaggca atggatccaa ttccgtgaca      3660
     gtttagaggc gttaaatgac attaaaattt cacgtcatgt ctttgaagga aaaaaaccga      3720
     tttcaaagga gatccacacc tttgttgatg cttcagaaaa tgcatatgca gcagccgttt      3780
     atattcgagc agttcacaaa gacaaaaggg tgactgtaca attgctgtgc gcaaaatcgc      3840
     gtttggctcc aataaataca attacgcttc cccgactgga actgaaagca gcagtgctag      3900
     gtgcacaact aacatacaat gtaaaggaac agttatcaat gcaagcaatt cctacatact      3960
     actgggcaga ttcggaaata gtgctatcat ggataaatag ccccactaca ataaaggata      4020
     aatttgtggc ttctaggatt acgacaattc aagaaacgtc tcttcaaaag gaatggcgcc      4080
     atattccatc agaacagaat gccgcggatg tagcttcaag aggaatatgt ggttccaaat      4140
     ttgccagtca cagcctttgg ttttttggcc cactattttt atatgggcca tctacaaagt      4200
     ggccagcacc attcattgct gcaaaatcag agcgtatcat aaagacgcca aattcatcaa      4260
     tagtaacagt gaaagatgat gtgttatttt atcgcataaa ccataggaac tccatttcta      4320
     aactgcttag gatagtagca tatgttatgc gtgtgaaaaa aaggccacga gtcaaaggtg      4380
     caacaatcca gttagaagag atggaacgag ccagaaaagt aatactacgc attatccagg      4440
     aaaggcattt cggtacggaa tataggagct tgaagaactg tcgtgaagtc gaaaaaggca      4500
     gcagtttaag cacgctcaca ccatttttag accaagatga tctcatcaga gttggaggta      4560
     gattggaagc agctgaattg tcatttgatg ccaagcaccc aatattactt ccatatggcg      4620
     accaaatcgt aaaattaatt tttgaaaaaa tgcataagga caatatgcat tgtggtgtcc      4680
     aggctctggt ggctatttca cgccagagat attgggctat aagagcaaaa acaatcgccc      4740
     gaagtgttgt tctcaactgc gtaaagtgta cgagagccaa gccaaaatta ttggagcaaa      4800
     taatgggaaa tttaccacca ttaagwgtaa cgcaagcacg accattttwa aactctggta      4860
     agaaaccaca cactgcatat attgcaatat tttgctgctt tgcgactaaa gcagtccatc      4920
     tggaattagt aagtgatctt actacagagg catttttggc agcgcttcgt cgttttataa      4980
     gtcgacgagg aaaatgtcaa actttgcatt gcgacaatgc gactaatttt gttggagcaa      5040
     gaaataagct tcaagagctg gaagatgcaa tattttccga aaaggcaaaa caatgcattg      5100
     tggaaagctg tattgataaa ggagtcaatt ttaagtttat tccaccaaga gcaccgcatt      5160
     ttggaggatt gtgggaagct gctgtaaaat cagctaagca tttgctgtta aaaaatgtca      5220
     tcacagctaa tctaacttat gaggagttag aaactgttat agtcgagatt gaagcaattt      5280
     taaactctcg acctttggtt cccatgtcaa ctgatccaaa tgatttgaca gcaattactc      5340
     caggtcattt tcttattgga gaaccactca ccgcccaggc tgacagcgaa ccttctcagc      5400
     aaccacagac attgggacaa cgatggcaag ctgtatcaaa acttaagcac gccttttgga      5460
     agcaatggtc aactgattat ctacaacaac tgcagcaaaa gcaaaagtgg agacgatcat      5520
     cagcaaacat taaggaagga gagctggtgt taataaaaga agataacaca ccagtactgc      5580
     aatggccaat gggaagaatt gtcaaggtat tccacggaaa agacaatttc gtcagagtag      5640
     tggaagtcaa aacagcaaaa ggattcttca agagggacat tcagcacata gctccattat      5700
     tcgcagagga agaaccggta tgtaagcatc cactattaga gaaccctgag gacagaattg      5760
     ttgaagaaaa cgcaccaaaa aggaaaaaat cttcaggact gtcgtcaatg gcaatgacat      5820
     tgatagtaat gcttcttttg ttaccattaa ctattgcaca atcaatcaat gtaacaaaat      5880
     ttgtttcaag gccaggaatc ttttttgaaa aggttggaaa tggtcaattt gccacaacgg      5940
     attggtctat aattgtttat tacaatttaa ggccgtattg gaatgatatg aacacatttt      6000
     caatgggagt tagcaaaatt ggtcatttat gtacacaatt tccacaamaa gaagcatgta      6060
     caagtctgta tcatcacttc aaacatttag aggaagatct gcaggctgaa aatatcctac      6120
     tagcaaaatc gcgtagacaa agagcaccac tggatatcgt tggaaatata gcaagtagtc      6180
     tgtttggcgt wttagactca acatatgcta acgaaatggc caagacaata acaaaggtta      6240
     aaggcaacga aaaacaccta ttgaatttat taaaaaatca gacatcattg attgattcaa      6300
     caattaatgt cataaaaaga gatgagattt ccaactcaaa acgattaaaa ttgattgaaa      6360
     actatatctc cgacacagaa agtaccaaga gtgtatttaa taaactttca tggtatataa      6420
     cactgtcaac tcaactttct attctggcat cagatcttca acgggtacaa gcagaaataa      6480
     taaatgtatt aacagatatt cgtcataata caattagccc aatgctaata tcaccacgac      6540
     aactaaagga gcaaatggaa caaatacata gtcacttgag acctggacaa atgctcccag      6600
     ttcacccaga taacattctt atggcatacc agctaatgaa gggtgaagga actattgtga      6660
     aggatcatgt cattattaaa gtaaattttc ctttaatatc ctcgcaagtt ctggacatct      6720
     acaaattgac tccaattcca tttctgggta aagatgaaat tcattcgatt gaaataaaat      6780
     caccgtttct tgcaatcaac aktcatcgtg atgaatttgt tgaaatgtct gaagcagact      6840
     taacgttatg tcaagaaaga gctaaaagcg attttatttg tttcaacaag caaacaatgt      6900
     tttcatcaga aattagttgt gagatgaaat tatttcataa taaaacggat tcatcctgta      6960
     aaatagtaag tactagaaaa tcctttcttt ggtctggaat gtatgccaag aatcaatgga      7020
     tatttgcaac aaacgaatct ttaaagcttt ctgctgtttg cttagatggg acatctaaca      7080
     tagaactaca aggctccggc tatttgactg caagtcctgg gtgcacaatt cgaaatacat      7140
     tgatgacgat aacgactcaa gagtcaacag aaactacact acaggcatca tatgctcgat      7200
     tcggagatag cgatttaact gaaagtttgc cgtcaaattc aaatatgacg gttgtaattg      7260
     acactcagaa actacatttc aataagcttc ttcaaagaaa aatggaactg tttccacaaa      7320
     atagctttaa gctaccacac aatttatcta atattgagca tcatcaaatc gccatttata      7380
     ttggattaat tttttaatga tcatcaccat tattcatctg gtcaaaagat ggcgtaaatc      7440
     tacgtctcct ctaccacttc aacaaggacc tagtatacct acgagtgcga ccacatttac      7500
     aactcagccg tttaccatca acattaatga ctgttgaaca atccgttcaa cggccgggag      7560
     aa                                                                     7562
//
ID   BEL-20_DEl-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-502
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7047-7047 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 502 BP; 158 A; 103 C; 85 G; 156 T; 0 other;
     tgtacgattt tcgccaagaa gaaaattgtt cgcagctgga ttaatattta tgggttaaat        60
     agacaagggt cattagtgat atcggcctac ctaaatcaat acaggaccac gtatgcctgt       120
     gtccacatgt gtgtcaattc tgacccatca taaaagataa cccacgatcg gtcacgtttt       180
     cacaccatct gcatgcagaa tatttgagac tattttacct acgatatcgt tatctaaatt       240
     gtattgtttg attaggataa accatgtaac tgacaattgt aatctagaat agacctatgt       300
     aaacaccctt tttgacccaa gaacatgtat ataaacccca agttatgctc aataaaatca       360
     gtacgaaaag atctcttgac gtattcactt ctccgcagcc caattggtat tgtacttatt       420
     gcggcgacta ttgccactgg tattgtactt gcggcacgca aaaaatatat ttcagcattc       480
     tgaattcatt tgaattcgta ca                                                502
//
ID   BEL-20_DTa-I repbase;    DNA;    INV; 5690 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DTa_;
KW   BEL-20_DTa-LTR; BEL-20_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5690
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1601-1601 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4733-5314] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           794..2005
FT                 /product="BEL-20_DTa-I_1p"
FT                 /translation="MCPTPLDVLKQKRSNIRRSISRIGTAVAKTEKVEKPD
FT                 AALTPAELTCRQTILEAYFKQIMAVQTEIEALDSTEEQLNYRAELEDMFIA
FT                 IKVTIKDQLGDDVHNSTPLAHDTLLRPGPPSSLKLPTLALPTFAGEYSEYK
FT                 NFITTFQQVVDRQEALSSIEKFNHLINCLRGAALETIKAFQVTPENYTKAL
FT                 LRLKSRYDNPTIVFLDNIASLFKLPTVTTENSVQLRSLVDNASALFNSMRS
FT                 LGSEAQIAQAMLITIVMEKVDKRTRELWNESLTFATLPSWNACLTLIERHC
FT                 QHLESSIHHFGNTNTAQNTSGRMRQPQAPRMGHSFTCSTQTCPICSGRDHR
FT                 IFRCPRLQNMTPAQRLEAVRTKSLCTNCLGKAHHMLPAASHYASLRSVRTG
FT                 IKESSTAKSA"
FT   CDS           1947..3854
FT                 /product="BEL-20_DTa-I_3p"
FT                 /translation="MLHFDPSGQESRSPRRPSPPNAPPQHHVAEAVTHAHV
FT                 DTHHDQVILATAIILVQDAVGNYVPGRALLDSCSQVNFMSEDFAQQLRLPR
FT                 SKGHIDIRSIGDSFTRIKHRTSTVVKSRFGDAELPVECCITSRIAYQPDAE
FT                 IDISSWNLPDNAPLADERFYQSRHIDLLLGTETFFTALSIGQIKLGPHLPM
FT                 LQKTIFGWVVSGRTGNQGHAAHAHSFLSSEESINLNLERLWRIEEISTTPL
FT                 TLTPAQAKCESIFQKSVCQVADGRLMIRLPFKDDPNLLGRSLETARLRFAS
FT                 LERRLSRNANLRAEYTKFMDEYERLGHMELVTSPLLNEPHYYIPHHCVFKL
FT                 NSTSTKLRVVFDASCPTSTYKSLNDILLVGPTIQPDLFTLLLRFRTHRYVI
FT                 TADVVKMYRQVLIDPAHRKFQYILWRSHIDQEIRTYQLNTVTYGTASAPYL
FT                 AIRSLSHLADQHASSHQIGAEAIKSCFYVDDFLGGADTLDQLNQIRSEVIA
FT                 ILTAGKMELAKWHSNHQDFVNDTTVKELNLDDYATTSTLGLKWDQREDVFK
FT                 FSFNCSTAPERITKRTILSVASSLFDPLGLVSPVIMVAKILLQEIWLLRLQ
FT                 WDESVPMTLQQAWLSFVSSLHVAFTQEQGLPMATWKFI"
FT   CDS           4142..5662
FT                 /product="BEL-20_DTa-I_2p"
FT                 /translation="MISRGCNLAELTKSTWFHGPTFLSNPPTLWPPNVHGN
FT                 LDVEKPFTTGPLSPLELRRAMLCVAWNLQQRYFIEEITLLQRGAPVRSHLK
FT                 FLSPFLQVTDGFNLLFVGGRLELASIPDTHKHPILLPAKDVAVVNYVRHLH
FT                 LRNYHAGPKVLVGLMRLEFWVVNARDVARRVVRNCVHCVRYRPKLLQQLMG
FT                 NLPVERLTLSRPFARCGIDFCGPVHTYLRVRGKMPVKSYIAIFVCFATKAA
FT                 HIEIVGELSTDSFLGALKRMIARRGLPSDIFCDNATNFVGASNKLQDLKDF
FT                 FFSTKTQQDITSYCTNEFVTFHFIPPRAPHFGGLWEAAVKSAKNLLCRTLK
FT                 DARLTFEELSTVAAETEAILNSRPLSPHSSDPSDLAVLTPGHFLTGDSLRA
FT                 LPDWPVKDDQLNCSQRWKRVSAIKQHIWRRWSTEYLHELQAKSNWSTGSSN
FT                 IAVNEMVLIHEDHVPPHRWLLGRIEAAIPGKDNHVRVADVRTSKGIIRRPI
FT                 HKLARLPINLK"
XX
SQ   Sequence 5690 BP; 1506 A; 1599 C; 1268 G; 1316 T; 1 other;
     attttggtac tgcgacaaga cggttgtatt tgcttcacta acttaactat ccccccgact        60
     ccctagagtc tcatgtgggt caggaaaacg ctcctgctcc atcaaacatt ttggcgccca       120
     acgtggggct ggatagttaa tttaaaaaat taaaaatcct tagtgttcaa atcaacccga       180
     tcgcccaaag ttaattccgt agccgcgcat tgttacgtta cgaatcgcgc tacttcataa       240
     gtgtcacgct gctcgccgtt caccttacga cacacgcaca cttgcatccg tagacacggc       300
     agtacacccc ccatacacca tcgttggaag gcgcgggttg ctcggaagat ctggattacg       360
     ctacgctgtt cccagtcagc tacgccacct atattctcga ttgcggagcc gagtctccat       420
     cgccccgtcg acaatatcat ctctaacctg gaaaaccgtt tcgctggacg acgtaacgcc       480
     acaacggtaa ggttacgtca tcggtgccaa cgccgccaga gcgctcacgc caatcgctga       540
     gtctcctttg gtctcattcc gccgtcactg cagtgctttc ggttttaacc tgcaagtcca       600
     ctgtacacgc atacagtcac cacgagtgcc aatagcagtc accgcgcaac gcaccaacct       660
     ggaactggtt cattacggaa ccagagcgtt gccagacatt cgactacata agttggcagc       720
     atacgtttat aaccacacac cagaagctct aatttataat acaagggctn attgcaagtg       780
     atccgcaata accatgtgtc ccacaccgct ggacgtatta aaacagaagc gatccaacat       840
     acgcaggagc atttcccgca ttggaacagc agtcgccaag acggaaaagg ttgagaagcc       900
     agatgccgcg ctgacgccag ccgaactcac gtgtcggcaa actattttgg aggcatattt       960
     caaacaaatc atggccgtcc aaaccgaaat cgaggcactc gactcaacag aggaacagct      1020
     aaactaccgg gccgagctgg aagatatgtt catcgctata aaggtcacca taaaggatca      1080
     gcttggagac gacgtgcaca attctacgcc gcttgcccac gacacgctcc tcaggcctgg      1140
     accaccatca tctctcaagc tgccaactct tgcgctcccg acctttgctg gcgagtactc      1200
     ggaatacaaa aactttatta ctacgttcca gcaagttgta gaccggcagg aagcgctatc      1260
     gtcgatcgag aagttcaatc acctcataaa ctgtctcaga ggcgccgcct tagaaaccat      1320
     caaggcgttt caagtcactc cagagaatta caccaaggcc ttacttcgcc taaagagcag      1380
     gtacgataac cccaccatcg tattcctgga caacatagcg tcactcttca aattgccaac      1440
     tgtgaccact gaaaatagtg tacagttgcg cagcctggtt gacaacgcat cagcgttgtt      1500
     caactcgatg cgatctttag gatccgaagc gcagatagct caagcgatgt taattactat      1560
     tgtcatggaa aaggtagaca agagaactcg agagctctgg aatgaatctc tcacgttcgc      1620
     cacattaccc tcgtggaatg cctgcttaac cttgattgag cggcactgtc aacacttgga      1680
     gtcctcaata catcacttcg gcaatacgaa tacggctcaa aatacatctg gcagaatgcg      1740
     gcaaccgcaa gctccacgca tgggccacag ctttacgtgc tccacgcaaa cgtgtcctat      1800
     atgctcaggc agggatcatc ggattttcag atgtccgcga cttcaaaaca tgacgcctgc      1860
     ccaacgccta gaagctgtcc ggacaaaatc gctgtgcaca aactgcctag gaaaggctca      1920
     tcatatgctc ccggctgcat cacactatgc ttcacttcga tccgtcagga caggaatcaa      1980
     ggagtcctcg acggccaagt ccgcctaacg cgccacctca gcaccatgtc gctgaggccg      2040
     tcactcacgc acacgtggat acccaccacg accaagtcat tttagctaca gccataatcc      2100
     tagtgcagga tgctgtgggc aactacgtac caggacgtgc cctactggac tcgtgctccc      2160
     aagttaactt catgtccgaa gacttcgctc aacaacttcg tttgccccga agcaagggac      2220
     acatcgacat tcgaagcatc ggcgattctt tcacccgcat caagcatcgc acttcgaccg      2280
     ttgtcaagtc acgattcggt gacgcagagt tacccgtcga atgctgtata acctcgagaa      2340
     tcgcctatca acctgatgca gaaatcgaca tttcatcatg gaacctccca gacaacgctc      2400
     cactggctga tgagagattt tatcagtctc gccatatcga cctacttctt ggcacggaaa      2460
     cgttcttcac cgctttgtct attggccaaa ttaagttggg cccccatctc cccatgttgc      2520
     aaaagacgat ctttggatgg gtagtatcag ggcgcactgg caatcaaggc catgccgccc      2580
     acgcccacag tttcctttca tcagaggagt caataaacct gaacttggag cgcttatggc      2640
     gcatagagga aatttctact acgccattaa cacttactcc agcgcaagct aaatgcgaat      2700
     cgatcttcca aaaatctgtc tgtcaagtag cggatggaag actgatgatt cgactgcctt      2760
     tcaaggatga ccctaatctg ttggggaggt ctcttgaaac agcacggcta agattcgcat      2820
     cgttggaacg tcgcttaagc cgaaacgcga atttgcgagc cgaatacaca aaattcatgg      2880
     atgaatatga gcgcttgggt cacatggaat tagtaaccag tccactcctc aacgaacccc      2940
     actactacat accacaccac tgcgtgttta agctcaacag cacgtcaacg aaactacggg      3000
     tagtctttga cgcctcgtgc ccgacaagca cctacaagtc cctaaacgac atccttctag      3060
     ttggacccac gattcaacca gacttgttta cactcttact aaggttccgg actcatcgtt      3120
     atgtaataac tgctgacgtc gtcaagatgt acaggcaggt attaatcgac ccagcgcatc      3180
     gtaaatttca gtacatccta tggagaagcc acatcgacca ggagattcgc acataccagc      3240
     tgaacaccgt tacctacggc accgcatcag cgccgtatct agcaattcgc agcctgtctc      3300
     acctcgccga tcaacatgca agttcacatc aaattggagc tgaagccata aaatcgtgtt      3360
     tttatgtgga tgactttctc ggtggagcag atacgttaga tcaattgaac cagattcgaa      3420
     gcgaagtcat cgctatcctc acggccggca agatggaact ggcaaaatgg cactccaacc      3480
     atcaggattt cgtcaatgat acaacggtca aggagctaaa tctcgacgac tacgccacga      3540
     caagcacatt gggactgaag tgggaccaac gagaagacgt cttcaaattc tcattcaact      3600
     gcagcacagc tccggaaagg atcacaaagc gaaccatcct ctcggtggcc tcatccctct      3660
     tcgatccgct gggacttgtc tcgccagtta ttatggtggc aaaaatcctg ctacaggaaa      3720
     tttggcttct tcgactacag tgggatgaat cagtcccaat gacactccaa caagcgtggc      3780
     tatcgttcgt gtcgtcgcta catgttgcat ttacgcaaga acaaggcttg ccgatggcca      3840
     cgtggaagtt catctaatcg cctcaaagtc gcgtgtggca ccaacgaaga agaagacgct      3900
     gccgcagctc gagctctgtg gagcgcatct tctagcacga ctgtacaacc agataaaggc      3960
     agcttttcta caacacacgc ccgatacttt tctgtggaca gattcacagc tagtgttgca      4020
     ttggattcga caacattctg cgacactttc tacgtttgtc ggcaatcgga tatccgacat      4080
     ccaagaattc acgcgagact gtcactggag gttcgttccg acacggcata acccagctga      4140
     catgatctcc agaggatgca acctcgcaga actcaccaaa tcaacatggt tccacggacc      4200
     tacatttcta tcaaatccgc cgacattatg gccgcctaac gtacacggca atctggacgt      4260
     ggaaaaaccc tttactacgg ggccactttc ccctctggaa ctgcgaaggg ccatgctttg      4320
     cgtcgcatgg aacctacaac agcgatattt catcgaggaa ataactcttt tgcaaagggg      4380
     cgcgccggtt cgtagccatc ttaaattctt atcgcccttc ttgcaggtca cagatggatt      4440
     caacctactt ttcgtcggag gacgattgga actcgcatcg atcccagaca ctcacaagca      4500
     tcccatattg cttcccgcta aggatgttgc tgtcgtcaac tacgtacgtc atctacacct      4560
     gaggaactac catgctggtc caaaggtcct ggtgggacta atgcggctgg aattttgggt      4620
     cgtgaatgcc cgagatgtcg ctcgtcgtgt tgtacgcaac tgtgtccact gtgtgcgcta      4680
     caggcctaag ttgctgcaac aacttatggg caacctccca gtcgagagac ttaccctgtc      4740
     aagaccattt gctcggtgtg ggatagactt ctgcgggccg gttcatacct atctacgcgt      4800
     tcgaggaaag atgcccgtta aaagctacat cgcaatattt gtgtgcttcg ccacgaaggc      4860
     ggcgcacatc gaaatcgtcg gagaactatc aactgattcg ttcttgggtg ctctgaagcg      4920
     gatgatcgcc agacgtgggc tgccttcaga cattttttgc gacaacgcga cgaattttgt      4980
     aggggcgagc aacaagttgc aagacctgaa ggactttttc ttcagcacca agacccagca      5040
     agacattaca tcgtactgta caaacgaatt tgtaacgttc cattttatac ctcctagggc      5100
     tccacacttc ggcggcctct gggaggctgc tgttaaaagc gccaagaatc tcttgtgccg      5160
     cacgctcaag gatgcccgac taaccttcga ggagctctcg actgtcgctg ctgagactga      5220
     ggcaatccta aattctcgcc cgctctctcc acactcatcg gatcctagcg atttggccgt      5280
     cttaacgcct ggtcatttct taaccgggga ctcccttcga gcactcccag actggcctgt      5340
     caaggatgat cagctcaact gctctcaacg atggaagcgt gtcagcgcca tcaagcaaca      5400
     catctggagg cgctggtcta cggagtatct tcacgagctt caggccaaat caaactggtc      5460
     gactggatct tcgaatattg cagtcaacga aatggtccta atccacgaag accatgtccc      5520
     tcctcatcga tggctgttag gtcgcatcga agcagctata ccaggaaagg acaaccacgt      5580
     ccgagtcgct gatgtccgga cgtcgaaagg aattataagg cgaccgattc acaaattggc      5640
     ccgtttacca attaatttaa agtaactagg tactttcaat ggggccggaa                 5690
//
ID   BEL-20_DTa-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DTa_;
KW   BEL-20_DTa-I; BEL-20_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-189
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1602-1602 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 189 BP; 56 A; 33 C; 37 G; 63 T; 0 other;
     tgttgggcca ctattgaatc tcgagataaa catgaatgta attttgaagt attgatcttt        60
     cttgaagtgt attgatctaa tttgttaacc taagctgcgc tctcagtggt aaagatttag       120
     ttcacgctct catgtaattc accacactgg ccacgaaggc tattatacga cgttagaata       180
     aagagttca                                                               189
//
ID   BEL-20_DWil-I repbase;    DNA;    INV; 5674 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DWil_;
KW   BEL-20_DWil-LTR; BEL-20_DWil-I.
XX
NM   BEL-20_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5674
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1797-1797 (2012).
XX
RN   [3]
RP   1-5674
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..5671
FT                 /product="BEL-20_DWil-I_1p"
FT                 /translation="MSNSDRVPVQPSAESQEDGAEATENGAVSSDRETDTP
FT                 TMSTPSRGDGLSVQQTILNGMFESHAGNGTAIKRPSKIDLAPWSVPALAQS
FT                 TIQGVSLPFLANTANLHNGLWTQGQSNAGGMQHGPGIQXPATGHLTLSPGV
FT                 HSTDLGHKKTLLSSEQIAARQVLNKDLPVFSGKPEEWLLFISHYEQSTERC
FT                 GISNEENLIRLQKCLKGAAWDAVRGKLMCPETVPYAIGTLRMLYGRPEIIH
FT                 SSLQRKLREEPAARSNNLDSVIQLALAVQNYCATLVAIGLKEYLHDPALLG
FT                 ELVDKLPGELKLDWGRHRMTLIGCVANLSIFDNWLFGIAMCASMVTPYTVP
FT                 AKDGAKRTKERIFLHNELQSGSSQESKTQEVRIRLCPKCAGSHNVADCRLF
FT                 REMSIKQRKEFVRQKRLCYCCFDQHVIRNCKSKRSCGVDGCRQIHHSLIHE
FT                 TADYKESKSQWQTNEDDKPVHPPILFHGDITSKALFRYMPIMLYGRKRNLA
FT                 TYALLDEGAACSLIEETLADELGLDGPAEELCLKWTSQVTQTESASKYVSV
FT                 GVSSMCQGATQFELKSLRTVRKLDLPTQTVTDELVTSRKHLQYLPNLSYCN
FT                 VKASLIIGLDNLKVCVPLEIRESEGDDVVAARCRLGWSVYGRHSDAAPASS
FT                 HILHICECNEASSMRALDASMKEYFAMESSGTRVPSKPLRSKDDERALQIM
FT                 EATTSYCPIDKRWQTGLLWRFDKVDLPDSYSMAMRRLQCLEAKMAKDIDLR
FT                 SFMLDTMQSYEEKGYIRRLTESELDKGKSSWFLPIFTVTNPNKNKTRLVWD
FT                 AAAKVNGTSLNDVLLKGPDILASLVGVLIRFRERPVAVAGDISEMFHQVRV
FT                 RPEDQTAQKFLWRSGNSAKAAETYVMQVMTFGASCSPALANYIKNRNAERF
FT                 RKESPRAVAAICRNTFVDDWLESTNTEDEMTELAMEVQRIHLEGGFNMRRW
FT                 TSNSASVVRALKNQEGDVPREVGFLEKTQDKVLGMWWLPVTDQLTYVVKPD
FT                 LLERASKDYPTKRTVLSVVMSIFDPLGLLGFFTVRAKIILQNIWRAGTDWD
FT                 ESLQEEDQADWKIWVKLLPKINEVRISRCMPKVCCARRVQLHTFVDASINA
FT                 YAALVYLRAEVDGIVHCSLVASKTRVAPLKPVSIPRMELMAAVLGLRLTKF
FT                 IEPELSVTVCQRIFWTDSKDVLCWIRSDARKYNQFVALRVGEILEDSDVLS
FT                 WRWVPTQHNVADDGTKWTKMPDMTGNSRWFVGPRFLYEQETQWPSMEQSPS
FT                 KTSESILHHEEKVKGNSSLACITPDPERFGTLEKLRAVQKRVLNFLQGICK
FT                 RPCGEQLMNILAINRDVETDAVFIRACQEEEFPEEIRCLNQGHSITNRKSK
FT                 LFKCTPYLDELGVLRIKGRIDRIEGVDMDTKRPIILPQKHRVTFLIVEYYH
FT                 RKNYHLHNEIVVNEVRQRYWITGLRALVRKVANACVACRIRVARPVPPKMG
FT                 DLPKERLSPHTQPFTFTGVDCFGPFEVAVGRRHEKRWGVLFTCLTTRAVHL
FT                 EIATSLSTDSFLCVLKAFVARRGVPRTILSDNGTNFRGASRVLKEHIERIS
FT                 TSAVEQQYPTLEFKFNPPSSPHMGGVWERLVRSTKSILSEILPKAGLKEEV
FT                 LRGAFADVEQILNSRPLTYVPLESAESEALTPNHFLKGSSSGLRESGSLXQ
FT                 SGPQLAKGYRVASQIADRFWKRWLREYLPTITRRTKWFQPQLKPVAVGDVV
FT                 IIVDDAAKRNTWPKGRVIDVHRGKDGQVRSAVVRTVDGLVTRPTVKLAVLN
FT                 LESNPPHEDAGELRGG"
XX
SQ   Sequence 5674 BP; 1647 A; 1186 C; 1550 G; 1288 T; 3 other;
     tcctgaaata tttatttctt tggctccaga gatattagca gagtctgaat atctctgaac        60
     cacgtggatt ggagtggaat cttccagaag cttccttcgt gagagcgacc gcggcagacg       120
     tttacatgcc ggctcgctga gagaggaaga gagagggaga tagtgaacgt ggaatcttcc       180
     agaagcttcc ttcgtgagag cgaccgcggc agacgattac atgccggctc gctgagagag       240
     gaaaagagag ggagatagtg aaccacgtgc aaacaggcaa acataacctc attgttacgc       300
     aacatatgca atgagcaaca gtgatagagt accagttcaa cctagcgctg agagtcagga       360
     agacggcgct gaggcgactg agaatggagc ggtctcaagc gacagagaaa ctgatacacc       420
     aacgatgtca acgccatcca gaggcgacgg tttgtcagtg caacaaacga ttcttaatgg       480
     aatgttcgag agtcacgcag gaaacggtac ggcaattaaa cggcccagta aaattgatct       540
     agctccgtgg tccgtacctg cgttggcgca atcgactatt caaggagtga gtctaccttt       600
     tctggccaat acagctaatc ttcataacgg attgtggacc caaggacaaa gtaacgcggg       660
     tggaatgcag catggacctg gaatccaack gccggctacc ggacacttga cgttaagccc       720
     tggagtgcac tctacggatt taggacacaa gaaaactcta ttgtcatcgg aacagatagc       780
     ggcccgccaa gtactgaaca aagacttacc cgtgttttcc ggtaagccag aagagtggtt       840
     gttgtttata agccactacg aacaatctac tgaaagatgt ggaattagta acgaagagaa       900
     tcttattcgg ctccaaaagt gcttaaaagg agcggcttgg gatgccgttc gaggaaagct       960
     aatgtgtcca gagacggtgc cgtatgcaat cggtacgtta cggatgcttt atggaagacc      1020
     ggagattatt cactcgagcc tacaaaggaa actaagagaa gaaccagcgg cacgctcaaa      1080
     taatttggat tcggttattc agctagcctt ggcagtgcag aactattgcg cgacactggt      1140
     cgcaattggg cttaaagagt atctgcacga tccagcttta ctaggcgagc tcgtcgataa      1200
     gttgccggga gaattgaaac tcgattgggg aagacaccga atgactctaa ttggatgtgt      1260
     ggctaacttg tctatctttg acaattggtt gtttggcatt gcaatgtgtg cctcaatggt      1320
     tacgccgtat acagttccag ctaaggatgg agcaaagaga accaaagagc gaatttttct      1380
     gcacaacgaa ttgcaaagtg gatctagtca ggaatcgaaa acgcaagaag tacgcatccg      1440
     gttgtgcccc aaatgtgcag ggagtcataa cgtagcagac tgtcgcctct ttcgagaaat      1500
     gagcataaag cagagaaagg agttcgtgcg gcaaaagagg ctctgctatt gttgttttga      1560
     tcagcacgtg atacggaatt gcaaaagtaa aagaagttgt ggtgtcgatg ggtgcaggca      1620
     gatacaccac tcgttgatcc acgagacagc ggactacaag gaaagcaaat cgcagtggca      1680
     gacgaatgag gatgataaac cagttcatcc accaatctta ttccatggag atataacaag      1740
     caaggcttta ttcagatata tgccaatcat gttatacgga aggaagcgaa atttagcgac      1800
     atatgcctta ctggacgagg gagccgcttg ctctttgatt gaagaaactc tggcagacga      1860
     gttaggacta gatggcccgg ccgaagaact gtgcttaaag tggaccagtc aagtcactca      1920
     aacggaaagc gcgtccaagt atgtgagtgt cggagtgtcg tcgatgtgtc aaggtgcgac      1980
     gcaatttgaa ctcaagagtt tgcgcacggt acgtaagcta gacttgccta cgcaaacagt      2040
     taccgacgaa ctggtaacat cgagaaagca tctacagtat ttaccaaatt taagttactg      2100
     taacgtaaaa gcaagcttaa ttattggtct ggataatttg aaagtttgtg tgcctttgga      2160
     gatacgggag tccgaaggag acgacgtggt cgcggcgcgc tgtagattgg gctggtctgt      2220
     gtatggccgg cacagcgacg ccgctccagc gtcctcacac atattgcaca tatgtgagtg      2280
     caatgaagcg agcagcatgc gcgctttgga tgcgtcaatg aaagaatact ttgctatgga      2340
     gtcctcggga acacgcgtgc caagcaagcc attaagatcg aaagacgacg agcgcgcgtt      2400
     gcagattatg gaggcgacca caagttattg cccgattgac aaacgttggc aaactggact      2460
     gttatggagg ttcgacaaag tagatctacc ggattcatac tcaatggcca tgaggcgtct      2520
     tcagtgttta gaagcgaaaa tggcaaagga catcgatctt agaagcttta tgttggacac      2580
     tatgcaaagc tatgaagaaa agggatacat ccggagatta acagaaagtg agctagataa      2640
     gggtaaaagt tcatggtttc ttcctatatt tacagtcact aacccaaaca agaacaagac      2700
     gaggctggtc tgggatgcag ctgcgaaagt caacggcacg tcattgaacg acgtcttgct      2760
     aaagggcccg gatatactgg catctctagt tggcgtgcta atacgttttc gggagcgacc      2820
     agtagcagtg gctggtgaca taagtgagat gtttcaccaa gtaagagtgc gcccagagga      2880
     ccagacggct cagaagtttc tatggcgcag tggaaattcg gctaaagcgg cagaaacgta      2940
     cgtgatgcag gttatgacat tcggtgcttc ctgctcgccg gccttagcta attacataaa      3000
     gaatcgcaac gcagagcggt tcagaaaaga atctccaaga gctgttgcgg ccatttgtag      3060
     aaacacgttt gtcgacgact ggctcgagtc gacaaacacc gaagacgaga tgacggagtt      3120
     ggccatggag gtgcagagaa ttcacttgga gggtggattc aacatgaggc gctggacctc      3180
     gaattctgcg agcgtagtga gagcgctcaa gaaccaagaa ggagacgtgc ctagggaggt      3240
     gggattcctt gaaaaaacgc aagataaggt tttaggcatg tggtggctgc ccgtgacaga      3300
     tcaacttacg tatgtagtca agccggattt gcttgaaaga gcatcgaaag actatccgac      3360
     caaaagaact gtgttaagtg tggttatgtc aatttttgac ccacttggat tgcttggctt      3420
     tttcactgtt cgtgctaaaa ttattttgca gaatatctgg cgagcaggaa cggattggga      3480
     tgagtctctt caggaagagg accaagcaga ctggaaaatt tgggtgaagc tgttacccaa      3540
     aatcaacgaa gtgaggattt caaggtgcat gccgaaggtt tgttgtgcaa gacgagtaca      3600
     acttcacacg tttgtggacg ccagcatcaa cgcttatgca gcgcttgtgt acctgcgagc      3660
     agaagtggat ggaatagtcc actgttccct ggtagcgtct aagacacgag tggccccctt      3720
     gaagccagtc tcaataccac ggatggaact gatggctgct gttttaggtt tacggctgac      3780
     gaaattcatc gaacctgaac tctcagtaac cgtatgtcag cgtattttct ggacggattc      3840
     gaaggacgtt ttatgctgga ttagatcaga tgcccgcaaa tacaatcaat ttgtggcatt      3900
     gcgagttgga gaaattctgg aagactctga cgtgctatct tggcgatggg tgcccaccca      3960
     gcataacgtt gcagacgatg gcacgaaatg gacaaagatg ccagacatga ccgggaattc      4020
     aaggtggttt gttggcccga gattcttgta tgaacaagag acacaatggc ctagcatgga      4080
     gcagagcccg agcaagacga gtgaaagtat cttgcaccac gaggagaaag tcaaagggaa      4140
     ctctagtttg gcttgcatca cacctgatcc ggaacgattc ggaacgttgg aaaagctacg      4200
     ggcggtacaa aagcgagttc taaacttttt gcaaggcata tgtaagaggc cttgcggaga      4260
     acaactgatg aacattttgg ctataaaccg cgatgtggaa accgatgcag tttttattcg      4320
     tgcatgccaa gaagaggagt ttccagaaga gatcagatgc ttaaaccaag gacatagcat      4380
     aacaaatagg aaaagtaagc tatttaagtg cactccttac ctggacgagt taggagtgct      4440
     acgtatcaaa ggacgaatcg acagaattga aggagtagat atggacacta agcgacccat      4500
     tatactaccg caaaagcata gagtaacgtt tctgattgtg gagtactatc acaggaagaa      4560
     ttaccatttg cacaatgaaa ttgtcgttaa cgaggtacga cagcggtact ggataaccgg      4620
     cttacgcgct ttagtgagaa aagtcgcgaa cgcctgtgta gcgtgccgta tacgagtggc      4680
     ccgaccagtg ccaccaaaga tgggcgattt accaaaggag aggttatcgc cgcacacaca      4740
     accattcact tttactggag tggactgctt cggcccattt gaagtcgcag tgggccgcag      4800
     gcacgagaag agatggggcg tgttattcac atgccttacg acccgagcgg tacacctaga      4860
     aattgctaca tcactgtcaa ccgactcatt tctctgcgta ttgaaggcgt ttgtagccag      4920
     aagaggggtg ccgcgtacca tactatcgga caatggtaca aattttagag gagccagccg      4980
     cgtattgaag gagcacatag aacggatatc aacttcagct gtggagcagc agtatccaac      5040
     gttggagttc aagtttaacc ctcccagttc accgcacatg ggcggcgttt gggagcgact      5100
     ggtacgttct actaaatcta tactttcaga aatactgcca aaggccggcc tgaaggaaga      5160
     ggtgttaaga ggagcgtttg ctgacgtaga gcaaattttg aattcaaggc ctctgacgta      5220
     tgtgccttta gaaagcgccg aatcggaagc attaacgccg aaccattttc taaaaggcag      5280
     ttctagtggc ctacgtgaga gcggttcact gsaacagtct ggkccgcaac tcgcaaaagg      5340
     gtatcgtgtt gccagccaaa ttgccgaccg tttctggaag aggtggctga gagaatatct      5400
     acctacaatc acaaggcgca cgaaatggtt ccaaccacag ctcaagccgg tagcagtagg      5460
     tgacgtggtg ataattgtag acgatgccgc taaacgtaat acgtggccaa agggaagagt      5520
     gatcgacgtt catcgtggga aagacggaca ggtgcgaagc gcagtcgttc gcacagtaga      5580
     tggacttgtg acgcgaccaa cagtgaagct ggccgtactg aatttggaga gtaatccacc      5640
     gcacgaagac gctggtgaat tacggggtgg ggaa                                  5674
//
ID   BEL-20_DWil-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_DWil_;
KW   BEL-20_DWil-I; BEL-20_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-439
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1798-1798 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 439 BP; 135 A; 97 C; 99 G; 108 T; 0 other;
     tgttgcggtg caggcttaat tgccgccccg cgccagtaga aaggcttacc caacgcgccc        60
     ctggttttta ttctctctca ttcgaagaag aacagttaga atttactttg tctttgcttg       120
     cactggtgac agagcggcgg cccgctatga cggcgcgcta gtcacagaaa attaggcaag       180
     caggaaagac gtgaaaagga gagaaaaaca caaatgtaag ataaaataga aacatgtgag       240
     aaatttgaat taacattgaa ataaagattt cagccaaccg atctaaccga tcgatttgcc       300
     ccacaaattg tgcaactgaa tatagcgcaa tacaacacaa aaccggcgtt caattgtttg       360
     gttagagggc tcggggtata tgttcgactc gcgaactttt ttggagctgt cccacgtcac       420
     aacctgaaca ttttctaca                                                    439
//
ID   BEL-20_MoPha-I repbase;    DNA;    INV; 5462 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5462
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1146-1146 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..1516
FT                 /product="BEL-20_MoPha-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MSESQKPNKAERPVTPQLDVPEERSSSRNVSPVRLSA
FT                 ELTLKVQTQLGRLAAIKSIAEMLPQSHEETSLEELNQFWLQIEETHKAFNK
FT                 EHAYFEVSWPAALTNHEYFSRNAHQQEILHYMAARRLIGKLRHSLTAQPAP
FT                 AEAISASSDERRVNTRVPDLSLPKFSGDYVAWPAFRDLFMSIILFNQQLTD
FT                 VEKLHYLRTSLEGVAARAVSGLPMTGDSLGPSWNILKDKFENKRLLIQACL
FT                 DKLFASSTPVPRKSAAQDKLLTEVKEALSTLEALGVKDDLGDCAVVYHVTR
FT                 LLDRVTREKWENAVCATREYPKFEKLEEFLASNTETLQRIEAAASQPGPSS
FT                 SAVTSKKTTAHQTSQRSDSSTASVNSYPCDCCNGQHFVVMCTKFRELSVQD
FT                 RHKVAVDKRLCFNCLGRHSVRSCKSLRGCKKCTERHHTMLHDARPTASSAP
FT                 SNNGSSVTPST"
FT   CDS           1520..5425
FT                 /product="BEL-20_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="KDGAIVERHTHVRSSRSTLLATALAQVSSSVSHLTAR
FT                 LLIDSGSELTFVTENLIRQLNIPRQYSGIFITGIGGKEYTQTRGVVSLTLR
FT                 STHSDSIANVQAHILKTVTSILPSFETEPEEWPHLKHLALADPEFLIPRPV
FT                 DILIGADAYGQIIKPNIIRHSPFMPIAQLSIFGWLVLGPVNKKTTCTSTHH
FT                 ATIQSNEDALNELLTKFWIQEEVPAHDVNRLTPDEQRCEEHFKMTHSRDPS
FT                 GRYTVRIPLKSPADLLGDSYHAAHQCLKGLRKRLSRDASYQRLYQQFMTEY
FT                 ETLNHMTKASSISSHRSHFYLPHHGVLKPDSTTTKLRVVFNGSSASTSGYS
FT                 INDLMYTGAKLHLNISDVLLWIRRHRHIFATDITKMYRQIKIHEDDWDLQR
FT                 ILWIDDQLNEVPYHLTTVTYGTKAAPFLAVRTLLQLVEDEGYRFPLAVPSI
FT                 SHGRYVDDIFGGADTVQQLREVAQQLKDLCMAGGFPLAKWHATHPDLIKTV
FT                 TDNQDQGLPITFDDCATKILGLKWLPQEDAFAFSTRNSCAKGGLTKRLILS
FT                 EVAQIFDPLGFASPVVIKAKILLQELWLHKLQWDEPLPSQLSARWLIIREE
FT                 LTSLAKLSIPRWFNTWSDSTVELYGFSDASQLAMAAVIYISVRSSKGATIS
FT                 LVCSKTKVAPLKRLSIPRLELTAALLLSRLMKYVKATLQMDVATTHMWTDS
FT                 LVTLSWIRSHASRWKDFVRNRVAQIQELTPDAHWRYIPGTSNPADCASRGL
FT                 TTAQLQHHSLWWNGPPWILKPNSWPSQPALTDKLSATEARPGVSLLAITPK
FT                 ADYHWDIIYRYSNLNKLLRITALCFRIISRLRKVHDSSPVVHTSPAAVERA
FT                 RLFWIKATQATYFSHELKMLQSNSPLAKAHAFNRLTAYIDAQGIIRVGGRL
FT                 AHAALSFDVKHPAILPRHSYLSSLIIAHAHQRTLHGGTQLTLSYIRQQYWI
FT                 LGGRAPVKSHILRCVKCARQRGIRAHQLMGQLPLSRVTPARPFTHTGVDYA
FT                 GPLTVKTWRGRGAKTSKSWICVFVCFSTSAVHLEAVGDYSSEGFIAAYRRF
FT                 ASRRGIAHTLHSDCGTNFIGADTALKRLFIQSTQEHQRISQLLSEDNTRWE
FT                 FNPPAAPHMGGKWEAVVKSIKYHLRRTIGENVLTFEELATLLTQIEAILNS
FT                 RPLEPLSDDPEDISALTPGHFLIGSSLTTLPEPSLTDLAISRLSRWQLIQQ
FT                 RVQQFWTQWSSHYLQRQQAISKWHHRNNEVKLGSLVLITDERLPPCKWPLA
FT                 RVTALHPGKDGLVRVVTLKTATTTLVRPVIKLAVLPVPSSE"
XX
SQ   Sequence 5462 BP; 1469 A; 1527 C; 1218 G; 1245 T; 3 other;
     ttttggtcct tcgagccgga tgtggcacgt gctctcggag tgaacaacgc agtcacgcat        60
     cctactcgtg atcggaaaac aaggctcatc cacacagtga cactcatcga agcggaatca       120
     catcacgcct gtctcacgcc agctcatcat gtcggaatct caaaagccga acaaggccga       180
     gcgcccggtg actccacagc tggacgtgcc ggaagagcgt tcatcgtcac ggaacgtgtc       240
     tccagtcagg ctttccgcag agctcaccct gaaggtgcag acgcagctgg gccggctcgc       300
     cgcgattaaa tccattgcgg agatgctacc gcagtctcac gaagagacat cgctcgagga       360
     gttgaatcaa ttctggcttc agattgagga aactcacaag gcctttaata aagaacatgc       420
     ctatttcgag gtctcatggc ccgcagcact caccaatcac gagtacttct caaggaacgc       480
     tcatcaacag gagatattgc attacatggc tgcacgacgt ctcattggca agctccgaca       540
     ctcattgacc gctcaacctg ctcctgcgga ggcaatctca gcatctagcg acgagcgaag       600
     ggtgaacaca cgtgttccag acctctcact cccaaagttt tcgggagatt acgtagcatg       660
     gcctgccttt cgagatcttt ttatgagcat cattctattc aatcaacagc tcacagatgt       720
     tgagaagctc cattaccttc gcacgtcgtt agaaggcgta gcagctcgag ctgtctcagg       780
     acttcccatg actggtgact cactcgggcc ttcctggaac atactcaagg acaagttcga       840
     gaataaacgc ctgctcattc aagcatgtct tgataagctc tttgccagct caacaccagt       900
     gcctaggaag tcggcagctc aggacaagct gctcacagag gtcaaggagg cactcagcac       960
     actcgaggcg ttgggagtca aggatgattt gggcgactgc gcggtggttt accacgtcac      1020
     acggcttctc gatcgcgtca cgcgggagaa gtgggagaat gcggtatgtg ccacgcgaga      1080
     gtatcccaag ttcgagaaac tcgaggaatt tctagcttcc aacacggaaa ctctccagag      1140
     gatcgaagct gctgcatctc agcckggtcc tagctcatct gcagtgacct ctaagaaaac      1200
     gaccgctcat cagacgtctc aacggagtga ctcatccact gcktcggtca actcataccc      1260
     gtgcgattgc tgcaatggac agcatttcgt ggtcatgtgt accaagttcc gagagctgtc      1320
     ggtacaagat cgacacaagg tcgcagtgga caagcgcctc tgttttaact gtctagggcg      1380
     ccacagcgtc cgatcatgca aaagcctgag aggatgcaag aagtgtacag agcgccatca      1440
     cactatgttg cacgacgcac gcccaacagc ctcgtccgcg ccgtcaaaca acggctcatc      1500
     ggtgacgccc tcgacgtgaa aagatggtgc aatcgtcgaa cgtcacacac atgtccgctc      1560
     atcccgctca acgttactcg ccaccgcctt ggcacaagtc agctcatcag tatctcattt      1620
     gacagcacgt ctgctcattg attcaggctc agaactcacc ttcgttacgg agaatctcat      1680
     tcgacagctc aacatccctc gtcaatactc aggcatcttc atcactggaa ttggaggcaa      1740
     ggagtatact cagacacgag gagtcgtgtc gctcacttta cgttcaacac attcagactc      1800
     gattgccaac gtccaggctc acattctcaa gacagtaaca tcaatcttac catcctttga      1860
     aacggaaccg gaagaatggc cgcatctcaa acacttggca ttagccgatc ctgaattcct      1920
     cattccgcgg ccggttgaca tcctcatcgg agcagacgcc tacgggcaaa tcatcaagcc      1980
     caacatcatc aggcattctc catttatgcc gatagcacaa ctctccattt tcggatggct      2040
     cgttcttgga ccagttaaca agaagacaac atgcacatca acgcatcatg ctactattca      2100
     atccaacgaa gatgctctta atgagttgtt gacaaaattc tggatccaag aggaggtgcc      2160
     tgctcatgat gttaatcgac tcacccctga cgaacagaga tgcgaggagc attttaaaat      2220
     gacacactct cgcgatcctt cagggagata taccgtccgg attccactta agtcaccagc      2280
     agatcttttg ggtgattcct accacgccgc tcatcaatgt cttaaaggat tacgcaagcg      2340
     actctcaagg gatgcgagct atcaacgtct ttatcaacag tttatgactg aatacgaaac      2400
     actcaatcac atgacgaagg catcatctat ctccagtcat cgctcacatt tttatttgcc      2460
     gcatcatggt gttctcaagc ctgacagtac aacaacgaaa ctgcgggtgg ttttcaatgg      2520
     ctctagcgca tctacatcgg gatactctat caacgacctc atgtatactg gagcaaaact      2580
     gcatctaaac atctcagatg ttttactgtg gatacgtaga catcgtcaca tttttgccac      2640
     agacatcaca aagatgtaca gacagatcaa gattcacgag gatgactggg atttacaacg      2700
     gatactctgg atagacgatc agctcaacga agtgccatat cacctaacaa ccgtcactta      2760
     tggaacaaag gccgcaccgt tcttggccgt gcgaactctg ctgcaattag tagaagatga      2820
     aggatataga tttccactgg cggtgccatc tatcagtcac ggcagatatg tcgatgacat      2880
     ctttggtggt gcagatacag tgcaacaatt acgagaggtt gcacaacaac tgaaagacct      2940
     ctgcatggcg ggcggctttc cactagcaaa gtggcacgca actcatcccg atctaatcaa      3000
     gactgtcact gacaaccaag accaaggctt accaatcaca ttcgacgatt gcgcaaccaa      3060
     gatactcgga ttaaaatggc tccctcaaga ggatgcattt gcattttcaa caaggaactc      3120
     ttgcgctaaa ggcggactca caaaacgcct cattttatct gaagtggctc agatttttga      3180
     tccacttggc tttgcatcac ctgtagtgat caaggctaaa attctcttgc aggagctttg      3240
     gctgcacaag ctccaatggg atgaaccact gccatcccag ctctcagcca ggtggctcat      3300
     catcagagaa gaactcacaa gtttggccaa actctcaata cctcggtggt tcaatacatg      3360
     gagcgactcg acggtggaac tttacggatt ctctgatgcc tctcaattag caatggctgc      3420
     agtcatatac atctccgtcc gcagctcaaa aggcgccacg atctcacttg tgtgctccaa      3480
     aaccaaggta gcacctctca agcggctctc aatccctcga cttgaactca cagcagctct      3540
     actgctttct cgactcatga aatacgtcaa agccactcta caaatggacg tagcgaccac      3600
     tcacatgtgg acggactctc tcgtgacact ctcgtggatc agatctcatg catcgcgctg      3660
     gaaggatttt gtcaggaata gagtagcaca aattcaagaa ctcactccag acgctcactg      3720
     gagatacatc cctggaacat ctaatccagc agattgcgct tcacgaggcc tcacaactgc      3780
     tcaacttcaa catcactcat tgtggtggaa tggaccgcca tggatactca agccaaactc      3840
     gtggccgtca caaccagcac tcaccgacaa gctgagtgca actgaagctc gtccaggtgt      3900
     ctccttattg gcgataacac caaaggctga ctaccactgg gatatcatct acaggtactc      3960
     aaatctcaat aaattattga ggatcacagc tctttgtttc agaatcatct cgcgattgag      4020
     aaaagtccac gactcatcgc ctgtcgtaca cacctctccc gcggctgtag aaagggcgcg      4080
     actcttctgg attaaagcaa ctcaagccac gtatttctct cacgaactca agatgcttca      4140
     atctaactca ccgttggcaa aagcgcacgc attcaatcga ttaactgctt acatcgacgc      4200
     tcaaggaatc attcgagtcg gcggacgact cgctcacgcg gcgctctcat tcgatgtaaa      4260
     gcatcctgca atattgcctc gacactctta tctatcatcg ttgatcatag ctcatgccca      4320
     tcaacggacg ttacatgggg gcacacagct cacgctctcg tatatccgac aacaatattg      4380
     gattctcggc ggacgggctc ckgtcaagtc acacatcctg cgctgtgtca agtgtgctcg      4440
     gcagaggggg atccgtgctc atcagctgat gggccaacta cctctctctc gagttacgcc      4500
     ggcacgaccg ttcactcaca caggggtgga ttatgcggga ccactcaccg ttaaaacttg      4560
     gaggggaaga ggtgccaaaa ccagtaaaag ctggatctgc gtctttgtgt gcttctcaac      4620
     ctcagcagta catctggagg cggtcggtga ttactcttcc gaaggattca ttgccgccta      4680
     ccgacgattc gcatcgagac gcggcattgc tcacaccttg cattcggact gcggcaccaa      4740
     cttcatcggg gcggatacag ctctcaaaag gctgtttatc cagagtactc aggaacatca      4800
     acgaatctct caactgctct ccgaagacaa tacccggtgg gaattcaatc ccccagcagc      4860
     acctcacatg ggtggaaaat gggaggcggt agtaaaatca atcaaatatc atctacgacg      4920
     caccattgga gaaaacgtgc tcaccttcga agaactcgct acactactta ctcagattga      4980
     ggcaattctc aactctcgac ctctcgagcc attgagtgac gacccagaag acatatcagc      5040
     gctcacacca ggtcattttc tcatcggaag ctctcttacc actctaccag aaccttcgct      5100
     cacggacctg gcgatctcaa ggctgtcacg atggcaactc atccagcaaa gagtacaaca      5160
     attttggacc caatggtcat ctcattatct acaacgccaa caagcaatct caaaatggca      5220
     ccacaggaac aatgaagtca aattagggtc attggtgctc atcaccgacg agcggctacc      5280
     accatgcaaa tggccattag cccgggtaac tgccttacat ccaggaaagg atggactcgt      5340
     tcgggtggtg acgctgaaga ctgccactac cactctagtt cggccagtga tcaagctcgc      5400
     tgttctgcca gtaccatcat cagagtagga atcatcaaca aggttgctga tggcgggcgg      5460
     aa                                                                     5462
//
ID   BEL-20_MoPha-LTR repbase;    DNA;    INV; 654 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-654
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1086-1086 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 654 BP; 164 A; 169 C; 147 G; 172 T; 2 other;
     tgttcaagaa tcattgaata ttaatttcgc gaaccggcta gatggcagca tccgccgggc        60
     gccacggaaa agaccataac taggatcggc gcatcgcgca cgcgcaggcc cgaccggctc       120
     gggaagacgg gctgtkaccg gcagtgtgtt tttgctatgg ctaccgtgtg tacatacgag       180
     tgatcgtaca tgcaggcagc ttttagtgtg tttctcagtc cgtggatatt ctcattctgc       240
     gctctcaaga acaattagtc agctcattag tcgtcgcatc tgtgaactca agtgcatcac       300
     caacgcctgc tcaaactcac cacgtatagc gcaggccggc gccacgtggt tcacacggct       360
     caggggcatc accttcacca ggccggtgct cgattagtat aatcgacccg agcgagtgaa       420
     tagacagatt attctcacag tgaaatctcg taagctcagt tttagaatac gtgcatggac       480
     aatctcattt gaacaacctc actttctgtg atcgattaga ttcgttctga tcaatgtaat       540
     ataatcatta aatatctatt taattcattt cgtgagcatt attgtcacaa cgtcctctca       600
     ccctgctccc atccgcaggg tcccagcgat tttatattgc gtgaawcgca aaca             654
//
ID   BEL-20_SiCu-I repbase;    DNA;    INV; 5813 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5813
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4994-4994 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           502..5493
FT                 /product="BEL-20_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MQLEKQMARHSKDRVRLEHLYKKESAPFDKVSTSSPS
FT                 TPASVDSSMRMLLPKRELPQFSGDVREWLSFMASFGEIDRDRNLSXIDKFH
FT                 FLIQSTREGSAARKLLKSFPFTAGNYAKALQSLKERFGRNNVLVKVYVRDL
FT                 LQLVIEASSGKVLDFGDLVTTITSQIRNLETLGVTQDKCAQVLYPVVESCL
FT                 PPDVLQAWQRSALFKEELEELIKFLQAEVNSYTERSLAQFQLNGNGSSGGS
FT                 KPSNKKKSNGGGGGGDVATSSSLINSNNGGGRSNSGGGGGGQRRKGKGNRP
FT                 PCVFCEKAHSPVACEAALGMXLSEKREILRSKKCCFCCLRPAQHFAQECRA
FT                 EVTCGVCHNKHHAVMCPVLRGAGDKVSSSSAAEHPEKSSSPPSSCSDSKPT
FT                 TSMTNGVESREVPLQTLLVAVHGTNGKMKTVRALFDPGSQTSYVLSSLAEE
FT                 LQFRTVGEEEVVHQLFGGATTRPQKHKIVKCFVSDKQGRNNCNFDCSTTDQ
FT                 IAGSIVSPPPGPWIDDYRREGITFDDVSSSGSSPVALLIGNDVAARLYTGR
FT                 IRHLDYGPSAMETCWGWVLCGKLPSRRKEIPKTMLVTNLLQFQGNPLSALW
FT                 DLESIGIHDPVETKKKEELALATQQHFEXTVVQLTDGRYQVCLPWIVGAKE
FT                 KLPSNFFIASRRLKNLTKGLQEKGHLDKYHDLFQQWEEDGMIEEVPPAQIS
FT                 DKGHYLPHHAVVKATSATTPIRPVFDGSSKAAGKLSLNDCLDKGPNTLELI
FT                 FPIHLRFRLKKIGMLADVKKAFQQISVAPDDRDFLRFLWWDDLSCKKEKIF
FT                 RHCRVVFGVTSSPYLLGATMRHHLEKATGKDAAVAKQLLLSTYVDNAILSV
FT                 DSVEEAKEFQTTATTLLLPAQFDLRGWEFGPREDDTWLPVLGLLWNVKEDE
FT                 LALDVTKVSKKIEEEPTLRHVLSLVHSIFDPMGYASPFTVVGKLLLRRCHD
FT                 AKCGMDTTLDPELKDDVLKWAAQIPLLSKLRIPRHVCFGEEGAQYSVHVLC
FT                 DASSSATAAAVFLRREEGADVKVFLLASKSRVAPKKKATIPRLELIACVIA
FT                 ARLLHTVREAVGCPELPVTCWSDSSTALAWIRGAGPWAVFVHNCVEKVRAL
FT                 TSVGSWRHIPGKHNIADLPSRGCSAKKLLESRWWEGPEWLYLPPHQWPTTE
FT                 EVPDDELVDKERKKTVTVATVTSSDHPMMSFLRLSQYPGILKAVAGWLRLK
FT                 KKLKEKLARQQNGNGDCQNKNEDGGGDLTAEDLKEAEYCLLLFVQQELHQN
FT                 PQSLKKLRPFVDERGIMRTRTRLTGQDDEDFLCPILLPERNEFVVRLIRWE
FT                 HEANCHVGVSTLLGILRQRFWVVNGRXTVXGVLXKCWICRRFTSRRXTAXE
FT                 APLPKSRTSLGTPFQVTGLDAAGPLVLRGGEKVWILLFTCATYRAVHLELV
FT                 DTCRLTGSSEPSVSLWQEGAVRSSSTPTTHVGLCGQQIPPKSQLEAGPGVR
FT                 CSIPDPVALQSSSCTVVGRMVGASHRLAKQLLRRVLGKKVVHRGELELLLV
FT                 EVEECLNNRPLTYTSENVEDPLPLTPNXFVRSAGALHLPEADLHDARSTRA
FT                 AYKKLQHLREVLRSRFRSEYLGFLRGEQCQKSSVELKPGDVVLVEHDNSKR
FT                 QDWLLGVIVEAIPGGDGAKRLFRLKTKNGEILRPVQRLFLMEQQEQ"
XX
SQ   Sequence 5813 BP; 1359 A; 1524 C; 1688 G; 1207 T; 35 other;
     ttactggcga acctgccagg atacgtggca gttgacctga cagtttttgt gacaatttag        60
     tgacaatttt agttcctgct tgtcgtgatg gcaggaaagg acgaaaaagt taaagtggtc       120
     gtcactgctg mgggcagtga cgacgaaaca agccaagctg tggatccatc ctccctgacc       180
     gtgcaggagc gcatccggaa gttgagtcag acagacgacc aggctggaga cgccaaagtt       240
     gtcgtcaaga ctgacccaga cgccaagacc gctgcaaaga agaccggaaa gggaagccag       300
     actacgacat gctggtcacc gccaaactgg gcatcctcaa tgacgccgtg ccgacctgaa       360
     aaaggagctc gaaaaggaga ctgtggatga ggacgagctc aattatgcgt gggcgcacta       420
     cgccctccag cacaaagcgt ttgaagacgc cgctgggaag gtgctcgacc agctactccg       480
     agagaaggat gagggacagt gatgcagctg gaaaagcaga tggctcgtca ctccaaggac       540
     agagtgaggt tggagcacct gtacaagaag gagagtgccc ccttcgacaa agtctccact       600
     tcatccccct ccaccccagc atcagtcgac agcagcatga ggatgctgct accaaagcgt       660
     gagcttccac agttttccgg cgacgtgagg gagtggttgt ccttcatggc gtcattcggt       720
     gagattgacc gggataggaa cttgtccswg atcgacaagt tccactttct catccagtcm       780
     acgagagaag ggtcagcagc gagaaagctc ctcaagagtt ttccatttac ggcgggaaac       840
     tacgccaaag ccttgcagag cctcaaggag cggttcggga ggaacaacgt cctggtgaag       900
     gtctacgtgc gagacctcct ccagctggtg atcgaagcgt cgtccgggaa ggtcctggac       960
     tttggagacc tcgtcaccac catcacgtcc cagataagga atctggagac gctcggcgtc      1020
     actcaagata agtgtgcsca agtgctctac ccggtggtag aatcctgcct ccctccagac      1080
     gtcctccagg catggcaacg cagtgcgctc tttaaagaag agcttgaaga gctcatcaag      1140
     ttcctccagg cggaggtcaa cagttatact gagcgatcgc tcgctcagtt ccagctcaac      1200
     ggtaacggaa gcagcggggg tagcaagccc tccaacaaga agaagagtaa cggcggtggt      1260
     ggcggagggg acgtagcgac gtcctcctcc ttgatcaaca gcaacaacgg cggtggaagg      1320
     agcaacagcg gcggtggcgg cggcggwcaa cgaaggaagg gaaaaggcaa caggcctccg      1380
     tgtgtctttt gcgagaaagc acactcccca gtcgcgtgtg aagcagcgct ggggatgasw      1440
     ctctcggaga agagggagat cctgcgcagc aagaaatgct gcttttgctg cctccgtcca      1500
     gcccaacatt ttgcacagga gtgcagagca gaggtcactt gtggcgtctg ccacaacaag      1560
     caccacgccg tcatgtgtcc agttctccga ggtgcagggg ataaggtgtc ctcstcatca      1620
     gcagctgagc atcccgagaa gagttccagt ccgccaagtt cctgttccga tagcaagccc      1680
     accaccagca tgacgaacgg agtcgagtcc agggaggtcc cactccagac attgttggta      1740
     gcagtccatg gaaccaacgg caagatgaaa acagtgaggg cactgttcga ccccggatcc      1800
     cagacctcct acgtgctgtc cagcctggcc gaagagctcc agttccgcac ggtgggagaa      1860
     gaagaggtgg tccatcagct gtttggtgga gccactacaa gaccacaaaa acacaaaatt      1920
     gttaagtgtt ttgtctcgga caagcaaggt cgaaacaatt gtaatttcga ctgctccacc      1980
     actgaccaga tcgcaggaag tatcgtgtcg ccgcctccag gtccwtggat cgacgactac      2040
     agacgtgaag ggatcacgtt cgacgacgtc agcagcagtg gttccagtcc agtcgcctta      2100
     ttgataggca atgacgtwgc mgcccgkttg tacacsggga gaatacgcca cctcgactac      2160
     ggtccgtccg ccatggagac atgttggggt tgggtcctgt gtgggaagct gccgtccaga      2220
     aggaaggaga tcccgaagac gatgctggtg accaacctgc tccagttcca ggggaatccg      2280
     ttatccgctt tgtgggacct ggagagcatc ggcatccatg accctgtgga aactaagaag      2340
     aaggaagagt tagcactggc cactcaacag cacttcgagm agactgttgt gcagctcacc      2400
     gacggcagat atcaggtctg cctcccctgg atcgttggag cgaaggagaa gctcccctcc      2460
     aacttcttta tcgcgagccg ccggctcaag aacctgacaa agggtctcca ggagaaaggc      2520
     cacctggaca agtaccacga cttgttccag cagtgggagg aggacgggat gatagaggag      2580
     gtgccgcctg ctcaaataag tgacaagggt cactatctcc cccaccatgc tgttgtcaag      2640
     gcaaccagtg ccaccactcc gatccgtcca gtgttcgacg gctccagcaa ggcagcaggc      2700
     aagctgtccc tgaacgactg tttggacaag ggtccaaaca cgctggagct catcttcccc      2760
     atccacctcc gtttccgtct gaagaagatt gggatgctgg cggacgtcaa gaaggcgttc      2820
     cagcagatca gcgtggctcc agacgaccga gatttcctcc ggttcctgtg gtgggatgac      2880
     ctatcctgca aaaaagaaaa gatttttmga cattgtcgag tggtgtttgg ggttacgagt      2940
     agcccttacc tgctaggcgc gaccatgcgt catcatctgg agaaagcgac gggcaaggat      3000
     gccgccgttg ctaagcaact cctcctctcg acctacgtgg acaacgccat cctgagtgtg      3060
     gactcagtgg aggaagccaa ggagttccag acgaccgcca ctaccctcct cctcccagcc      3120
     cagtttgatc tgagagggtg ggagttcggn cctcgtgaag acgacacgtg gctgcctgtg      3180
     ttgggtctac tgtggaacgt gaaggaagat gagttggcct tggacgtgac caaagtctcc      3240
     aagaaaattg aagaggagcc gacgctccgc catgtcctca gcctagtcca ctccatattt      3300
     gaccccatgg gctacgcgag cccatttact gttgtgggga agctgctcct ccgtcgttgc      3360
     cacgatgcca agtgtggtat ggataccacm ctggatcccg agctgaagga tgatgtcctg      3420
     aagtgggcgg cccagatccc actcttgtca aagttgagga tccctcgtca tgtttgtttt      3480
     ggcgaggagg gagcacagta cagtgtccat gtactgtgcg acgcatcatc ctccgcgaca      3540
     gccgctgcag tgtttttgag acgagaggag ggagctgacg tgaaggtctt cttgttggcg      3600
     tccaagtccc gagtkgcccc gaagaagaag gccaccatcc cccggttgga gctgatagct      3660
     tgtgtgatag cagcgaggct attacacacc gttcgagaag ccgtcggatg tccagaacts      3720
     cctgtgacct gctggtcaga ctcctctaca gctctggcat ggatccgtgg cgcgggtcct      3780
     tgggcagttt ttgtccacaa ctgcgtggaa aaagtgaggg ccctgacgag tgttggctcc      3840
     tggaggcata tcccgggcaa acataatatt gccgacctcc catcccgtgg ctgctctgcc      3900
     aaaaagttgt tggagtccag atggtgggag ggacccgagt ggctgtacct tcctccgcac      3960
     cagtggccaa caactgaaga agttcccgac gacgagctcg tggacaaaga gcggaagaag      4020
     acggtcacgg tggcgaccgt gacctccagt gaccacccca tgatgagctt cctgcgtctc      4080
     tcccagtatc cagggatcct gaaggcggtg gcagggtggc tgcggctgaa gaaaaaatta      4140
     aaagaaaaat tagctaggca gcaaaatggc aatggagatt gtcaaaataa aaatgaagat      4200
     ggtggtgggg acttgaccgc ggaggacctg aaggaggcag aatattgtct gctcctcttt      4260
     gtgcagcagg agctgcacca gaatccacag tccctgaaga agctccgccc ttttgttgat      4320
     gaamggggca tcatgagaac ccgcaccagg ctgaccggtc aagacgacga ggacttcctg      4380
     tgtcccatct tgctccccga gcggaacgag tttgttgtcc gcctgatacg gtgggagcac      4440
     gaggccaact gtcacgttgg agtgtcgact cttttgggga tcctgcgtca gcggttctgg      4500
     gtggtcaacg gcmgamgmac wgtcagwggc gtcctgwcga agtgctggat ctgcmggcgt      4560
     ttcacttctc gtcgtwscac agcacmagaa gcaccactwc caaagtcgag gacgagtttg      4620
     gggactccat tccaggtgac ggggttggat gctgctggtc cacttgtcct ccgtggcggt      4680
     gaaaaggtgt ggattctcct cttcacgtgc gccacctatc gtgctgtcca tctggagctg      4740
     gtggacactt gtcggctgac gggttcatcc gagccctccg taagtttgtg gcaagaaggg      4800
     gccgtccgga gctcatctac tccgacaacg catgtgggtt tgtgcggcca acaaatccct      4860
     ccaaaaagtc aactggaagc aggtccagga gtacgctgca gtatcccgga tccagtggcg      4920
     cttcaatcct ccagttgcac cgtggtgggg aggatggtgg gagcgtctca tcggctggcc      4980
     aagcagctcc tccgtcgtgt cctggggaag aaagtggtcc accgtggmga gctggagttg      5040
     ttgttggtgg aggtggagga gtgcctcaat aaccggccac tgacgtacac ctccgagaac      5100
     gttgaagacc cgctgccact cacaccaaat cwctttgtcc gcagtgctgg agcactgcac      5160
     ctcccsgaag cagaccttca cgacgcccgt agcacgagag cagcctataa gaagctgcag      5220
     cacctgcgtg aagtcctccg ttcccgtttc cggtccgagt accttggctt ccttcgaggg      5280
     gagcagtgcc agaagtcctc cgtcgagctg aagccaggtg acgttgtgct ggtggagcac      5340
     gacaactcca aacggcagga ctggctgttg ggagtgatcg tggaggcgat tcctggaggc      5400
     gatggagcca agcgactatt tcgtctgaag acgaaaaatg gagaaatcct gcgtccagtc      5460
     cagcgtctct tcctgatgga gcagcaggag cagtagcagt cggagcccac acctgaaatt      5520
     aaaaataaaa tataaaatta ttagtcctga ttcatgaaat tataagttta aattgtatga      5580
     aattatgaaa atgtagttgt tgtacttacc ttgttttgtt taccttttgt tgtctccctg      5640
     atgctcacca ccagaagaga ctggaaattt gtttgtttga tttggcgctc tgtcgtggac      5700
     agaaagcagc ctttgttgtt ttagtttggg gcactgtgag acccctcctt tccagtctct      5760
     ttgttgattt gttccaacca ggtcctgagg gccctggttg gaaggtggga gta             5813
//
ID   BEL-20_SiCu-LTR repbase;    DNA;    INV; 549 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-549
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5017-5017 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 549 BP; 124 A; 131 C; 122 G; 170 T; 2 other;
     tgtcggggaa ttattgaggg ttggggtaat ttggggattg ctaaatcctg cccaagattc        60
     caccgctgga atttgggcag ttggtgggct gatgcacgcc tcctttctct tttmtgtgtt       120
     agagagatgc aagcctcatg gctcgcacgc tctcatgtag tttttcatga ggagcacaac       180
     aacagcatcg cctataccac cgctccccgt ccccgatcct cacactcttc tccagaactt       240
     tgccgtgaag caagcaagct cgttgctgct tgcacaaaaa tatacttttg tctctttggc       300
     ccgttggcca ttaaagttta attgtcattg tagttaagtc gtcagtctgt gtaaaawaaa       360
     ttgggtcttt ttggtttatt gggaaaattg tcctgtgtca ctacgcattt tatttgacgt       420
     cacgtatccc gcgatccgaa ccattttctt ctgtgaagtt aggtgcattt tgggcgcgct       480
     catgagatca gagtaactga tcatcatcac agcactgcta actcttagca aaacgctcaa       540
     ttcccgaca                                                               549
//
ID   BEL-20_SpEx-I repbase;    DNA;    INV; 5602 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5602
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6900-6900 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           257..5599
FT                 /product="BEL-20_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSQASRKLADPIKKRSYIKGRLTMFKTYIDNIEKLEK
FT                 LTDQQISELRLRISKLEACFSTFDDLQSEIEIESENPDEQMKVRSEIEGQF
FT                 YSLISQGQCILEKIEESNLRRKSLAHPTMKQSGSFESASSFSGSIKLPTIK
FT                 LPTFDGNYSHWLEYRDTFEALIHKNDCIETINKFHYLRSSLEGSSALIIKS
FT                 LTFSSDNYRVAWDLLCDRYNNKRLLISNHMKSLFNIESISKESDKSLRLMI
FT                 DDVTRNLRGLKALDQPIDYWDTIIIHLAVNKLDHATSRRWEEHKSSLGEVP
FT                 TLDEFFKFIRDRADVLEASRPSKLNIKAERAATFVASSQPHINRNFNNNCV
FT                 ICNQEHRLFECTRFISMSLDERNDVVSKYKLCINCFKPGHRAYNCKSFGCK
FT                 ICKYKHNALLHRNRPQSEDSSTKVSSTQAVTKVTSHSTSSVGVVAGCEPPP
FT                 TELAVASSCAVPTRYVPPSAEPVSLSTVASQYVLLSTALVKVFSKNKNKYY
FT                 VARVLLDSGSQLSLVTESFCKKLGLSCKRIDHNFNINGIGNSKLQLVESSN
FT                 FVIKSMHNNFSVEINCMILPRITNMLPSVKVNVDKLNIPGDILVDLADSRF
FT                 YEPSEVDILIGADLFWELVTSQQVKLGKGLPTLQSSKLGWLVTGPVDILCI
FT                 PKIEAKCNLARGVSDQLEKFWKVEEVICIDKIPSSTEEDFCEKHFVKNMYR
FT                 TENGRFCIKMPFHTSPSVLGDTFVKAKSRLINLEKRFKKQPGIKDMYVDFI
FT                 NEYEELNHLSESGKPPFACYLPHHPVIREKSETTKLRVVFNASEKSSTGYS
FT                 LNDIQMVGPVIQDDLFSILLRFRQHNYVMTSDIEKMYRQILISESQRHLQM
FT                 ILWRENEHEPVKHLKLNTITYGTASAPYLSTRCLLQLAHECEDPDIGKIIE
FT                 HDFFMDDLLTGHQTEEGLNSICRLITKILSSAGFNLRKFRSNANQLFVENK
FT                 LNEVQELKEFKTVTSTLGLTWSPQPDMFKFSVQVDKHEKITKRNILSSIAK
FT                 IFDPLGLLSIFVVKAKLILQRLWLCKLEWDDPVDDEIKKLWYNFIRNMNSL
FT                 SCIEVPRHVMLKDALSIEIHIFCDASASAYGSCVYVRSASGRGDNHVQLLC
FT                 SKSRIAPLKGLTIPKLELCGALLSAELGNKVTHSLRCTISRYVYWTDSMIV
FT                 LGWLHTSRNTPKQLKVFVANRVNKINNLTQNCEWRYVPTEHNPADYISRGV
FT                 DQMNNKVQTMWWNGPQFLSLAECHWPNVGEHKLNSLTLPEMKQVGSLVNYV
FT                 NVNNNVLIEFERYSKLNKVQRTMAYILRFVKNCKTKEIKNRLTCNYLTADE
FT                 LNESLLYLVKFAQLDAFKDEYYSLLSHKPLHNKSRILSLSPFLDSNFNVIR
FT                 VGGRLSNAPVLYERKHPLILDYKHRLTRLIFENKHNELFHAGPQLLLAAVR
FT                 EKYWIVNARKVARSVVKNCIVCKRFKFKSIVPIMGNLPKQRLNPGTPFETT
FT                 GVDLAGPYFITDRKGRGCKISKCYMCLFVCFTTKALHLEVVSDLSTEAFLL
FT                 SLRRFISRRSKPCLICCDNATNFLGASNELSKYLLENKDKISEYCSNEGMK
FT                 FAFIPPYAPNFGGLWEAGVKSAKFHLQRILGNRHLTYEELSTLFCQVEAIL
FT                 NSRPLGPMSSDPNDFQPLTPGHFLVGKPLIALPSPVLTESNCNRLNRYEQL
FT                 EQMRQHFWMRWQHEYISELQHRTKWRKPDINLRIGDMVIIKESNLPPLRWK
FT                 IGRIHDLHMGNDGVSRVADVRTASGTVRRAINRLCPLFEPEDEQFKKPEDG
FT                 KLKVRPSTGG"
XX
SQ   Sequence 5602 BP; 1846 A; 896 C; 1175 G; 1685 T; 0 other;
     ttatggtgcc gtgaccagga ttttggaata ttgaggaatt gaaagacaaa aggaaattgc        60
     aaaaaggaaa ggaataagta caaggacaca ggaaagaaag agtagctaaa ggaaatttcc       120
     atagcgaggt gagcccgttc cattttttcc ttcctaccca ctactttgag ccgtgtgttg       180
     cgaatatttg gcagaatatt gttaaagttc ctcataacca actgcattta acacaacgta       240
     ggtcgtataa ttaaaaatgt ctcaagcctc caggaaactt gcagatccga tcaagaagag       300
     gagctacatt aagggtagat tgacgatgtt taaaacatac atcgataata tagaaaaatt       360
     agagaaatta acggatcagc aaatttccga attaaggcta agaatatcca aattagaagc       420
     atgtttttcc actttcgatg acttacaatc tgaaattgaa attgaatcgg aaaatccgga       480
     cgaacagatg aaagtacgtt ccgagattga aggtcaattt tattcattaa tttcgcaagg       540
     ccagtgtatt ttagagaaaa tagaagaaag caaccttaga aggaaaagtc tggcccatcc       600
     aactatgaag cagagtggta gtttcgaaag tgcaagttca ttttctggtt caattaaatt       660
     acccacaatt aaattaccaa cattcgatgg taattatagt cattggttag agtacagaga       720
     cactttcgag gcattaattc ataaaaatga ttgtattgaa acaataaata agttccatta       780
     cttgcgatcg tcattagagg gtagctccgc tttgattata aaatctttaa catttagttc       840
     tgataactat cgtgtagcgt gggacttatt atgcgatagg tataataata agcgtcttct       900
     tataagcaat cacatgaagt cattatttaa tatagaaagc ataagtaaag agtctgataa       960
     atcattacgt ttaatgattg atgatgtaac aagaaattta agaggtttaa aggcgttaga      1020
     ccaacccata gattattggg atacaattat tatccatttg gcagtgaata aattagatca      1080
     tgcaacgagt agaaggtggg aggaacacaa aagttcatta ggagaggttc ctaccctcga      1140
     tgagtttttt aagtttatac gcgatcgagc agatgttcta gaagcgtcga ggccaagtaa      1200
     attgaatatt aaagctgaga gggccgctac ttttgtcgct tcttcacaac cgcatatcaa      1260
     ccgtaatttt aataataact gcgttatttg taatcaagaa caccgcctat ttgaatgtac      1320
     gaggtttatt tctatgagtt tagatgaaag aaatgatgtt gtttctaagt ataaattatg      1380
     tatcaactgt tttaaaccag gccaccgggc ctataactgc aaatcatttg gttgtaagat      1440
     ttgtaaatat aaacataacg cattattgca tagaaataga cctcaatcgg aagacagtag      1500
     tacgaaggtg agttctaccc aagccgtcac taaggttacg tcacactcga cgtcatccgt      1560
     cggagtagtc gctggatgcg aaccgccacc aactgaattg gcggtcgcct cgagctgcgc      1620
     tgtgcctacg cggtatgtgc cgccgagcgc ggaaccggtt tccttatcaa ctgtagcgag      1680
     tcaatatgtt cttttgtcga ccgcgcttgt taaagttttt agcaaaaata agaataaata      1740
     ttatgtcgca cgcgtattgt tagattctgg aagtcaatta tcattagtaa cggaaagttt      1800
     ttgtaagaaa ttaggattgt cttgcaaacg aattgatcat aattttaata ttaacggaat      1860
     aggtaatagt aaattgcaat tagtagaaag tagtaacttt gtaataaagt caatgcataa      1920
     taatttttct gtagaaatta attgcatgat cttacctaga attactaata tgttgccaag      1980
     tgtaaaggta aatgtagata aattgaatat tccaggcgac atattagtgg atttagcaga      2040
     tagcagattt tatgagccct ctgaggtaga tatattgata ggagcagatt tgttttggga      2100
     acttgtaacc agtcaacaag taaaattagg taagggtctt cccacattgc agagctctaa      2160
     gttgggttgg cttgttacgg gtcccgtgga tatattatgt ataccgaaaa ttgaagcaaa      2220
     atgtaattta gcgagaggtg taagtgacca gttggagaaa ttttggaagg tggaagaagt      2280
     tatatgtata gataaaattc cgagtagtac cgaagaagat ttttgtgaaa aacactttgt      2340
     aaagaatatg tatagaacag agaatggtag attttgtata aaaatgccct tccatacttc      2400
     gccttctgta ctaggagaca cctttgtaaa agctaaatcg cgtttaatta atttggaaaa      2460
     aaggtttaag aaacagcctg gcataaagga tatgtatgta gattttataa atgaatatga      2520
     agagttaaat cacctatctg aaagcggcaa acccccgttt gcatgttatt tacctcatca      2580
     cccggttatc cgagaaaaga gtgagacaac caagcttcga gttgtattta atgcctcaga      2640
     aaaatctagc accgggtatt cgttaaatga catacaaatg gtgggacctg taatccagga      2700
     cgacttattt agtattttgc tcaggtttag acaacataat tatgtaatga cctcagacat      2760
     tgaaaaaatg tataggcaaa ttttaatctc tgagagtcaa agacatttgc aaatgatatt      2820
     atggagggag aacgagcatg aaccagtaaa acatttaaaa ttaaatacaa tcacctatgg      2880
     gaccgcgtcg gcgccatact taagtactcg ttgccttttg caactagcac atgagtgtga      2940
     agatcccgat attggtaaga tcattgaaca tgattttttc atggacgatt tattaacagg      3000
     tcatcagaca gaggaaggat taaatagtat atgtagatta attactaaaa tcttaagttc      3060
     agctggtttt aatttgcgaa agttccgatc aaatgcaaat cagttgtttg tagaaaataa      3120
     attaaatgaa gtacaagaac ttaaagaatt taaaacagtc accagtactt tagggttaac      3180
     atggtcacct caacctgata tgtttaaatt ctcggtacaa gtagataaac acgaaaaaat      3240
     taccaaacgt aatatattgt cttctattgc aaaaatattt gacccattag gtcttttaag      3300
     tatattcgtt gtcaaggcta aattaatctt acaaaggtta tggttatgta aattagaatg      3360
     ggacgatccc gtagatgatg aaattaagaa attgtggtat aacttcataa gaaatatgaa      3420
     ttcccttagt tgtatagaag tacctagaca tgtgatgctt aaggatgcat tgagtatcga      3480
     aattcatatt ttttgtgatg cgtctgccag tgcgtatggg tcatgtgttt atgtacgttc      3540
     tgctagtggg aggggagata atcatgtaca gttgctttgt tccaaatcta ggatcgcgcc      3600
     cctaaaaggt ttaacaattc ctaagctcga gttatgcggc gcgttgttgt ccgccgagtt      3660
     aggaaataag gtgactcact cattgcgatg tactatttct cgttatgttt actggactga      3720
     ttcgatgatt gtgcttggtt ggttgcatac gtcacgcaat acgcctaaac aattaaaagt      3780
     atttgttgca aatcgcgtaa ataaaattaa taacttaact cagaattgtg aatggcgata      3840
     tgtaccaacc gaacacaatc ccgccgatta tatttctcgc ggggtggatc agatgaataa      3900
     taaagtacaa accatgtggt ggaatggccc tcaattctta tctttagctg aatgtcattg      3960
     gcctaatgtg ggtgaacata aattaaatag tttaacatta ccagaaatga agcaggtagg      4020
     ctcattagtg aattatgtta atgtaaacaa caacgtgtta attgaatttg agcgttattc      4080
     taaactaaat aaggtacaac gtacaatggc ctacatactt agatttgtta agaattgcaa      4140
     aactaaagaa ataaaaaata gacttacctg taattattta acggctgatg aattgaatga      4200
     aagtttattg tatttagtaa agtttgctca gctggatgca tttaaggacg aatattatag      4260
     tttattgagt cataagccgt tacataataa gagtagaatt ttatcactta gccctttctt      4320
     ggattcgaac tttaatgtaa tacgtgtagg aggtcgcctt agcaacgcac ctgttttgta      4380
     tgaaagaaaa catcctttaa ttttagatta taaacataga ttaactaggc ttatctttga      4440
     aaataaacat aatgagttgt ttcatgcagg tcctcagtta ctattagcag cggttaggga      4500
     aaaatattgg attgtaaatg caagaaaggt ggctaggagt gtagttaaga attgcatagt      4560
     gtgtaagcgc tttaaattta agtcaatagt cccaattatg ggcaacttac ctaagcagcg      4620
     actgaatcct ggaacgcctt ttgaaactac cggggttgat ttggctgggc cctatttcat      4680
     tactgaccgg aagggtcgcg gttgtaaaat aagtaaatgt tatatgtgtt tatttgtttg      4740
     ttttactaca aaggcgctgc acttagaagt tgtgagcgac ctaagtactg aagcatttct      4800
     attgtctctc aggagattta tttctcgtcg ttctaaaccg tgtttgattt gttgtgataa      4860
     tgcgaccaat tttttaggtg ctagcaatga acttagtaaa tatttgttag aaaataaaga      4920
     taaaataagt gaatattgtt ctaatgaagg catgaagttt gcatttattc cgccttatgc      4980
     tccgaatttt ggagggttat gggaggccgg ggtaaaatcc gccaagttcc atttacaaag      5040
     aatattaggg aaccggcact tgacatatga ggagctttct actttatttt gccaggtaga      5100
     agcgatacta aattccagac ctttaggtcc tatgtcatcc gaccccaatg atttccaacc      5160
     cctaactccc gggcactttc tcgttggtaa acccttgata gctcttccct caccagtatt      5220
     gacagaatct aactgtaatc gactcaacag atatgaacaa ttggaacaga tgaggcagca      5280
     tttctggatg agatggcaac acgagtatat aagtgagctt cagcaccgta ccaaatggcg      5340
     taaacccgat attaatttac gtattggaga catggtaatc atcaaggaaa gcaatttgcc      5400
     acccttgaga tggaagatcg gtcgtataca tgaccttcac atgggcaacg atggtgtctc      5460
     cagagtagcg gatgtgagga cagctagtgg cacagtgcgg cgagcgatca atcgcctgtg      5520
     ccctttgttc gagcctgaag acgaacagtt taagaagcct gaggatggaa agttgaaggt      5580
     gcgaccttca acggggggag ta                                               5602
//
ID   BEL-20_SpEx-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-305
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6928-6928 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 305 BP; 92 A; 74 C; 66 G; 73 T; 0 other;
     tgttaacgcg cacgagtgcg gggtgcggga cgcactaccg ccaccacggc cgccacctcc        60
     cactttaccg tgtaggtacc taccggtacc ctatataagc gagtgcaccg gggtcgtcga       120
     cgtctacgcc tgaattttga attaagtatt gtattatata aattagagtc ataccaaagt       180
     taaggaaatg ttgtaaagtg ccaagttaag gcaaataaac ctcaagtaca gttcgtgttc       240
     gagtaattca tttaagctcc tatcatcaag aacctaacac acacagaaag gtctaagcct       300
     agaca                                                                   305
//
ID   BEL-20_TrNi-I repbase;    DNA;    INV; 5874 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5874
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1035-1035 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           554..5851
FT                 /product="BEL-20_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSEAKMADLVKKRAVVKGRLTLFENYIKRCECPLSDQ
FT                 QTLELQLRVDNSSNLLESYSDLQSLIEENADELDLPKHLEDRERFEEQYFK
FT                 TVACARLLLQKEVDYDKVVTKTKMRVKLPDIKIPTFDGSYDRWLEFKNSYF
FT                 SMIHEREDLDNIQKFHYLRSSLSNSASQVISALEFTASNYTHAWELLENRY
FT                 NNLRLLQHNHVKSLYSIPSLHKESASQLRKLIDTVLRNLRALSSLGEQTHA
FT                 WDTLVIYLVVSKLDPITEREWEHYQGTLYNTNSKPSFVKLDDLLKFLKDRA
FT                 DMLDIIKVSHTKHSHDNKSSEQTQLIHNKKPSTHSYVATSAGDNNNNNTKT
FT                 SKRRPRVCVMCKGNHSLYTCSKFINLPIQDRINFVNTTNICKNCLRSSHTV
FT                 HDCTFGPCRLCHLEKHNSLIHIDSGDNLSVAGASKTQSQSVTSDVSNVSTS
FT                 LHSSADITDSLCKQTLYSFVPTVLLSTALVDIADNKNQFHTARVLLDNGSQ
FT                 QCFIRKSLCDKLNVPLLQSTCQVTGVGHSIARSTHTCKILLRSKVKHYSTN
FT                 IKCLVLPCITNRLPAFNINVNNINIPDNLQLADPSFHSPSDIDILIGADKF
FT                 WDLLSDGQIRLKNGPYLQNTKLGWIMSGPLYDSNNGLRINQIHCNFSQTLD
FT                 VQLKQFWELEEITNVGNILSADEQMCENIFVETTTRTQEGKFSVRIPFKES
FT                 PTVLGESYTGAEKRLLSLERKFNRMPEFREKYINFMNEYESLGHMTRIDTY
FT                 GSPHYFLPHHGVLNENSSTTKLRTVFDASAVTSTGKSLNNIQLIGPPLQND
FT                 IFSILVRFRQYKYVACADVEKMYRQILIQPDQRELQLILWRKNTSDPIGIY
FT                 RLNTVTYGTASAPYLSMRCLNQLASECEDEQVATVIREDFYVDDVLIGNDD
FT                 LNSLLNMCDKVTDTLNAACLPLRKWIFNLDITAHDISKRLALGDQCQNKTL
FT                 GMGWFNKRDELHFTSRVINNVNPLTKRTMLSVIAQVYDPLGILAPAIIIAK
FT                 MVMQKLWLCKINWDESVPNDVVLSWDKFISTLQCLHTLRIPRYVLSSHTQY
FT                 IELHIFSDASQCAYGACAYVRTYSDNSPVTSKLLCAKSKVAPLKPTSIPRL
FT                 ELCGALIGARLYRKIINSLRLTFYKTFFWTDSTIVLGWLRMSPHSLKTFVQ
FT                 NRIVEINELTSNAIWSHVGTKHNPADLVSRGLSLDSLSDCSLWWNGPQFLQ
FT                 DHELMRSQQGITPYCDYATNLPDLKIDTTALVCDVTKNNAVVINFDRFSSY
FT                 NRMRRTGAYVLRFVHNTRTRRHDRMVGPLSVDELCASTQMLTRLAQRESFP
FT                 KEYIKLKGNLPLHTTSAISSLNVFLDSYDIIRVGGRLTNSPIFEYDKKHPV
FT                 LLCSKHRLTLLLFQHFHYELLHAGPQLLLATMRESWWPLGGRNLARKVVHQ
FT                 CVRCTRLKGKTVTPIMGNLPSERLEPGFPFIRCGVDYAGPVSVLNRKGRGA
FT                 KLEKGYICLFVCFITRAIHLELVTTLSAHEYLLALKRFISRRGKPAQVFSD
FT                 NGTNFIGAMKEVKLMFNEHSHQIIDNLCNDNIEFKFIPPYAPHFGGLWEAG
FT                 VKSCKHHLRRVMGTANLTYEEFSTVLSQIEAVLNSRPMCPLSSDPHDLLPL
FT                 TPAHFLIGRSLLTPACRDMTDEPTNRLTRFQRVEQIRQQFWKRWSTDYISE
FT                 LQIRTKWKTHNQDLALNTLVVIKEDHLPPLKWRMGRIVKVFTGKDGVSRVA
FT                 ELRTATGNVQRAFSKICPLPVPSTTSSGIQDDSGCVANGDAVSFET"
XX
SQ   Sequence 5874 BP; 1748 A; 1167 C; 1296 G; 1663 T; 0 other;
     taatggtcca tccgagccaa attaagaaca gctgaagagt cctaatataa ttgaggtgaa        60
     gtccgagtat ccgtcgcatt attacggatt caagaaattc acccgccatt acatgtgcta       120
     gcgtgcacct acaacgggag ttcgagtcag cgggtgccga gtacctacaa taagacttcg       180
     aggtcttcga gtcatcgagc acctacatcg agagttcgag tcatccagca cctacatcga       240
     gacttcgagc catcgagtac ctacaacgag ggttcgagtc gtcgagtacc tacaacaaga       300
     attcgagtca gcgagtggat tggagcggca gggctgattt cctaccaggt ttccctatcc       360
     cttttctcgg tctgtgttta atatttgtgc tgtgttccta gttgtggagc ggcggtgccc       420
     agccggtgtc gtgaaatccc gatgccgatg tgtggttggt aatctcgcgg gtctctgcgg       480
     gttgcacgtg gcgcgagtct tcacacggga agatttacag tgagtactct tgttttccta       540
     ttttttcctc gaaatgagtg aagctaagat ggcggatctt gtgaaaaaaa gagcagtagt       600
     aaaaggccgt ttaacattat ttgaaaatta tattaaaaga tgtgaatgcc cgctaagtga       660
     ccaacaaaca ttagagttgc agttacgcgt tgataacagt tccaatttat tagaatctta       720
     cagcgacttg caaagtttaa tcgaggaaaa cgcggacgag ctcgaccttc caaaacattt       780
     ggaagatcga gaacgtttcg aagagcagta ttttaaaacc gttgcgtgcg ctaggctcct       840
     gttgcagaag gaggtagatt acgataaggt agttactaaa accaaaatgc gggttaaatt       900
     accggatatt aaaataccta cttttgacgg atcgtacgat cgttggttgg aatttaaaaa       960
     ttcgtatttt agtatgatcc acgaacgcga ggatttagac aacatacaaa aattccatta      1020
     tttaagatca tcgttgtcga atagtgcgtc gcaagttatt agtgcattgg aatttacggc      1080
     gagcaattac actcacgctt gggagctgct agagaatcgt tacaacaatc tacgtctatt      1140
     gcaacataac cacgtcaagt ccttatattc gattccttct ttacataaag aatcggcttc      1200
     acaattaaga aaacttatag acactgtgtt aagaaaccta cgtgcgcttt cttcacttgg      1260
     ggaacaaact catgcgtggg acacgttagt tatttaccta gttgtttcga agttagatcc      1320
     cattaccgaa cgtgagtggg aacactatca gggtacacta tataatacta acagcaagcc      1380
     gtcatttgtg aagttagatg atttacttaa gtttctcaag gatagggcgg atatgttaga      1440
     tattattaaa gtaagccaca ccaaacattc acacgacaat aaaagtagtg aacaaacaca      1500
     attaatacat aacaaaaaac catctactca tagttacgtc gctacgagtg ccggtgataa      1560
     taataataac aatacgaaaa cgagtaaacg ccgtccgcgc gtatgtgtta tgtgcaaagg      1620
     taatcattcg ttgtatacgt gttctaagtt tattaattta cctattcaag ataggattaa      1680
     ttttgttaac acaacaaata tttgtaagaa ttgtttacgt tctagtcata cggtacacga      1740
     ttgtacattc ggtccgtgta ggctatgtca tcttgaaaag cataatagtc ttattcatat      1800
     cgatagcgga gacaacttaa gcgtggcagg tgcgagtaag acacagtcgc agtcggtaac      1860
     tagtgacgta tctaatgtct cgacgtcatt acactcgtca gctgatatta ctgactcgct      1920
     ttgtaaacaa acgctatatt cttttgtacc tacggttctg ttatccacag cgttagtgga      1980
     tattgcagat aataaaaatc agtttcacac ggcacgcgtg ctccttgata atggtagcca      2040
     acagtgtttt attagaaaat cattatgcga taagctaaat gtacctttat tacagtccac      2100
     ttgtcaagtt accggtgtgg gtcattcaat cgcgaggtca acccacactt gtaaaatatt      2160
     attacgttcg aaggttaagc attatagtac taatattaaa tgtttagtgt taccgtgtat      2220
     tacaaatagg ttaccggcat ttaacataaa tgtaaataat attaatatcc cagacaatct      2280
     tcaactagct gacccgagct ttcattcgcc gtcggatatt gatattctga taggtgcgga      2340
     taagttctgg gatttgttga gtgatggtca aataaggtta aaaaatggac cttatttgca      2400
     aaatacgaag ctagggtgga taatgtctgg gcccttgtat gatagtaata atggtctgcg      2460
     cattaatcag attcattgta atttctcgca aacattagat gtacaattaa aacaattttg      2520
     ggaactcgaa gagattacta acgttgggaa tatccttagt gccgacgagc aaatgtgcga      2580
     gaatattttc gttgaaacga caacacgtac tcaagagggt aaattctcag tgcggatccc      2640
     ttttaaggaa tcgcctacgg ttcttgggga gagttatact ggggctgaaa aacgcttgtt      2700
     gtcgcttgaa cggaagttta atcgtatgcc ggaatttagg gaaaaatata ttaacttcat      2760
     gaatgaatac gaaagtctcg gtcacatgac acgcatagat acctacgggt cacctcacta      2820
     tttcctacca caccacggtg tattaaatga aaatagcagt actacaaaat tgcgcacggt      2880
     gttcgatgcc agcgcagtga cgtctacagg caagtcatta aataatatac aattgattgg      2940
     gccgccgctt cagaacgaca ttttttccat attagtacgt tttaggcagt ataaatatgt      3000
     agcatgtgcc gatgtggaaa aaatgtaccg tcaaatctta atccaaccag atcaacggga      3060
     attacagtta attttgtggc gtaaaaatac atcggaccca ataggtatat atcgccttaa      3120
     caccgtgacg tacggcacgg catcagcgcc ttatcttagt atgcggtgtc tgaatcaact      3180
     tgcgagtgaa tgtgaggatg aacaggtagc tactgtgatt agagaggatt tctacgtaga      3240
     tgatgtctta ataggtaatg atgatttaaa tagtttatta aacatgtgcg ataaggtcac      3300
     tgacacattg aacgcagcgt gtcttccatt acgtaaatgg atatttaatc tggacattac      3360
     tgcacatgat atatcaaaaa gattggcatt aggtgatcag tgtcaaaata aaactttagg      3420
     tatggggtgg ttcaataaaa gggatgaact acattttaca tcacgggtaa ttaataatgt      3480
     gaacccatta actaaacgta ctatgttatc agttatagcg caagtgtatg acccattagg      3540
     tattttagca ccggcaataa taatagcaaa aatggttatg caaaagttat ggttgtgtaa      3600
     aataaattgg gacgaatcgg ttcctaatga tgtagtgttg tcatgggata aatttattag      3660
     tacgttacag tgtttacaca cgttacgtat tcctcgttat gttttgagtt ctcacacaca      3720
     atacatagaa ttacatattt ttagtgacgc atcgcagtgt gcatacggcg catgtgctta      3780
     cgtgcgaaca tactccgata actcacctgt tacaagtaag ttactctgtg ccaaaagtaa      3840
     ggtcgcgcca ttaaaaccga ctagtatacc gcgactagaa ttatgcgggg cgttaatcgg      3900
     tgcacggtta tatagaaaaa taattaattc actacggttg accttttata aaactttctt      3960
     ctggacagat tcaacgattg tccttgggtg gcttcgaatg tcacctcatt cgttgaaaac      4020
     cttcgttcag aatagaatag tagaaataaa tgaacttacc agtaatgcta tctggtcgca      4080
     tgtaggtact aaacataatc cagcagattt agtctcacgc ggtctcagcc tggactcgct      4140
     cagtgactgc agtctatggt ggaacgggcc acagttcttg caggatcatg agttgatgag      4200
     gtcacagcaa ggtataacac cgtactgtga ctacgccact aatttaccag acttaaaaat      4260
     agacactaca gctttagtat gtgacgtcac aaaaaataac gccgtagtta taaattttga      4320
     ccggttttcg tcgtataatc gcatgaggcg tacaggggcc tacgtattgc gtttcgttca      4380
     caatacacgc acacggcgac acgatcgcat ggtagggccg ttatctgtgg atgagttgtg      4440
     tgcatcaaca caaatgttaa cacgactcgc acaacgcgaa tcattcccta aagaatatat      4500
     aaaattaaaa ggtaacctac cattacatac taccagtgca atttctagtc ttaatgtatt      4560
     tttagatagt tatgatatta taagagtagg tggacgctta actaattcgc ctatcttcga      4620
     gtatgataaa aagcacccgg ttttactatg cagtaagcac cgtttaactt tattattgtt      4680
     ccagcatttc cattacgaac ttctccatgc tggtccccaa ctgctattag ctactatgcg      4740
     tgagagttgg tggccattag gggggagaaa tctggccaga aaggtagtcc atcagtgtgt      4800
     tcgctgcacg cgactaaagg ggaagaccgt taccccaatc atgggcaacc tgccttcaga      4860
     gcggttggaa ccgggttttc cttttattcg ctgtggggtg gactacgctg gacccgtctc      4920
     ggtgctaaac cgcaaaggta ggggggctaa gctagaaaag gggtatatat gcctatttgt      4980
     ctgctttata acacgagcta ttcatctcga attagtcact actctttctg cacatgagta      5040
     cctattagca cttaaaagat ttatatcacg tcgtggtaag ccggctcaag ttttttcgga      5100
     taacggaacc aattttatag gagccatgaa agaggttaag ttaatgttta acgagcattc      5160
     acatcaaatt atagataact tgtgtaatga taatattgag ttcaaattta taccacctta      5220
     tgctcctcat ttcgggggat tgtgggaggc aggagttaag tcctgtaaac atcatcttag      5280
     gcgcgttatg ggtaccgcta atctaacgta cgaggaattc agcacggtgt tgtcacagat      5340
     cgaagccgtc ctgaattccc gtccgatgtg tcctttatct tctgatccac atgaccttct      5400
     tccactgact ccggcgcact tcctcatcgg ccggtcgctc ctgacaccag cctgcagaga      5460
     catgacggac gagccaacaa atcgcctgac gcggttccag agggttgaac aaattagaca      5520
     gcaattttgg aagcggtggt cgacagacta catttcagag cttcagataa ggaccaagtg      5580
     gaagacacac aaccaggact tagctttgaa cacccttgtc gttattaagg aggaccactt      5640
     accacctctg aaatggcgca tgggcagaat tgtaaaggtg ttcacaggaa aagacggtgt      5700
     gagccgggtt gctgaactcc gaactgcgac gggcaatgta cagcgagcgt tctccaaaat      5760
     ttgcccactt ccggtgccat cgacgacgag cagtggcatc caggatgaca gcgggtgcgt      5820
     cgccaacggc gatgcagtta gttttgaaac ctgaggattc caaggcggcc ggca            5874
//
ID   BEL-20_TrNi-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-20_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-207
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1055-1055 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 207 BP; 50 A; 42 C; 41 G; 74 T; 0 other;
     tgttcgctgc tcacaccgcc atctagtgac gcaacgcgat cgaaaaatgc gcgcgaacgg        60
     ttcgcgaatg aacattattt tatactctat tttttttgtt tattattatc tgtgtatttt       120
     tcttcttgtg cctgttctgt tggagtaaag gagagtggca gacgtgaatt atcgttttta       180
     tttaaaaatg tcctgacacc cccaaca                                           207
//
ID   BEL-210_AA-I repbase;    DNA;    INV; 5551 BP.
XX
AC   AAGE02017420;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-210_AA_;
KW   BEL-210_AA-LTR; BEL-210_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5551
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017420; Positions   13131    7581.
XX
CC   Positions [4598-5182] - Integrase core
CC   'CATGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(221..4042,4046..5551)
FT                 /product="BEL-210_AA-I_1p"
FT                 /translation="MSEEQTPQSTRNITSKNLLDALNEESTSYEPIEVQKL
FT                 SKTRAQKKKAMAQRLEKAIDRRDMAKEKMIRIHEGMTKPDKNIHWLNLQLE
FT                 NLRRCYDEVEKTYLEICDVVPRDQREDFKVQNIQIEEMYDQLYVNIQSEIS
FT                 EWKAREERGKLSALAPAFNPPQQPAPVNNLPPHLHVPLPTFDGNLENWYSF
FT                 KCMFQTIMGRYPNESPAIKLYHLKNALIGSAAGKIDQDVINNNDYSAAWKM
FT                 LEDAYEDERLIIDTHIDALLSLPKMTNENGEELRKLIDTCIKHVDALKNRE
FT                 LPVEGLAEMILINLIAKRLDKETRKLWESQLSQEELPSYVEMIDYLRESVR
FT                 ILQKMTGYADQRTSSTAKQKTKSDQKIQPARNFVQTKEVCHCCNGDHLIYK
FT                 CGQFKELNVSSRYAKVKQAGLCFNCLRRGHRTVDCNSDKFCKSCKRKHHSL
FT                 LHDEKSSSAHKSDGVPSDQTAKPEEHQEVAVQAGSVNCATSLMLKQQVLLS
FT                 TAEVLVAGSGNVSLPCRVLLDSGSDSNLISEAFAKQLDLSMESINLPISGL
FT                 NNAETRVKYKLRTKISSRVNPFNAILDFLVVPTITSNLPMIKVDIRSWSIP
FT                 TSVDLADPSFHVPKEIQMIIGAELFFTLVKNGRIKLADGNPMLVETDLGWI
FT                 VSGPVKGHPSSPQGSICHLNLREEQINRTLVKFWELETVQEASPLTSREQA
FT                 IEKHFQLTHFRDDSGRYIVRLPFNDNKSQLGDSLNIARNRFDRLLRSFCDE
FT                 KKKTRYTEFMSEYQALGHMVEVFDNPVDFYFLPHHAVYKESSTTTKIRVVF
FT                 DASAKTTSGHSLNDALDVGPTVQKDLITILLRFCCFPVVLTADIPKMYRQV
FT                 QIHEDDRKYQRILWLNSKNEIGTFELTTVTYGCSSAPYLATRALMQLAKDE
FT                 ASELPVAAKVIEENSYIDDFLTGGNTDEEVIEIYEQLTEMLRRGGFGVHKF
FT                 CTNSEIIRNRIPTELQEMQANFEDSDINSAIKTLGLIWNQHEDYFRFNVAP
FT                 LDETVPTKRIVLSAVGQLFDPCGYLGPVITMAKMLMQDLWRLKLEWDDVLP
FT                 DEQMKMWNDFRGQLPMVNNLQKKRCVVTGDAKGVELHGFADASLRAYGAVL
FT                 YTRCISPDGTVEVNLVCSKSRVAPLKPMTIPRLELCGALLLARLVDKTISA
FT                 MKIPFKSVTLHLDSQVVLCWLEKSPLALNQFVSNRVAEILELTQSYNWQSV
FT                 RSEENPADLISRGVFPAELLTMEKWWKSSHVLWEHTPSYNEGRIHLNDNEL
FT                 PELKPAVVVAATVKKPSIDMTRLSNFRRLQRAWAFVLRFINNVRTKTRDTS
FT                 PLRAQEMADALHAVMKITQKDEFQDLFHALQSNDKKRNRYSGLAPFVGTDG
FT                 LIRVGGRLKYSSIPYDGKHQILLPEKHHVTVTLIRQLHEDNFHVGQRGLLS
FT                 IVRERFWPVNAKMLIKRIISKCYVCSRNNPHPVTQYMGNLPNYRITPAPVF
FT                 SNTGVDYAGPIYLKEAGRKTVVYKAYICVFVCMATKAIHLEVVSSLTAGNF
FT                 IAALQRFISRRGIVANLYSDNGTTFVGANHELAALRQLFEDQATQRKLNDF
FT                 CVSKGIQWHFIPPRSPHFGGIWEAGVKSAKYHLKRVVGETKLTFEEMSTFL
FT                 TQCEAILNSRPLIPISNDPNDVEVLTPSHFLIQRPALSIPEPSYEEVKIGR
FT                 LSRWQHVQLMKEHFWKRWSTEYLHQLQSRPKWNSGVTAITIGAMVVLKDEN
FT                 IPPHQWCIGRIVATHPGADGIVRVVTIKTPTSEFRRAVTKICLLPSVEPGD
FT                 STGGE"
XX
SQ   Sequence 5551 BP; 1590 A; 1269 C; 1375 G; 1317 T; 0 other;
     ttttggacca ttcgaaccag ataagtggtt ttcgatggtt ttacgttggt ttctggtgtt        60
     atcctgacga aaaagtgaag tttttcgcga tttccaccgt gtggaaaaat ccggcgttcc       120
     gccattcgac gcggcgtaca gtagtgtgtg tgtgctcgcg aaccgcattg gaacgtgttc       180
     gatacacgtc atcctcgaaa aagtgttgtg aacggtacca atgagtgaag aacagacccc       240
     acaatcaact cggaacataa cctccaaaaa tcttctcgat gcgttgaatg aggaatcaac       300
     cagctacgaa cccattgaag tgcaaaagtt gtcaaaaaca agagctcaaa agaaaaaagc       360
     catggcgcag cggttggaga aggcgattga tcgacgtgac atggctaaag aaaagatgat       420
     tcggatccac gaaggcatga cgaaacccga taagaacatt cactggctga acttgcagtt       480
     ggagaatctt cgacgctgtt atgatgaagt ggagaaaacg tatttggaaa tctgtgatgt       540
     cgttcctcgg gaccagcgag aagatttcaa ggttcaaaac atccagattg aagaaatgta       600
     tgatcagctg tacgtgaaca tccagtcgga aatttcggaa tggaaggcaa gggaggaacg       660
     aggcaagctg agtgcattgg cacccgcatt caatccgcct cagcaaccgg cgcctgtgaa       720
     taatttgcca cctcatctgc acgtcccgtt accaactttc gatggaaatc tggaaaattg       780
     gtactctttc aagtgcatgt tccagaccat catgggtaga tacccgaacg aatctccggc       840
     tatcaaattg tatcatttga aaaacgccct tattggaagt gccgccggta agatcgatca       900
     ggatgtcatt aacaacaatg actattctgc cgcctggaaa atgcttgaag atgcgtacga       960
     ggatgaacga ctcataatcg atacgcacat cgatgctttg ctgagtctgc caaagatgac      1020
     gaacgagaac ggggaagaat taaggaagct aatcgatacc tgcatcaaac atgtcgacgc      1080
     acttaaaaac cgcgaactac cggtggaagg attggctgag atgattctaa tcaacctgat      1140
     cgccaagcgt ttggataagg agacgcggaa gttgtgggag tcacaattgt cccaagagga      1200
     gttgccatcg tacgtcgaaa tgatcgatta tcttcgcgaa agtgtccgaa ttttgcaaaa      1260
     gatgacagga tatgccgatc aacgaacatc gagcaccgca aagcagaaga caaaatcaga      1320
     ccagaagatt caaccagcaa ggaactttgt gcaaaccaag gaagtatgcc actgttgtaa      1380
     tggtgaccac cttatctaca aatgtggtca attcaaggag ctcaatgtaa gcagcaggta      1440
     tgccaaggtg aagcaagcgg gactttgctt caattgtttg cggcgcggtc atcgtacagt      1500
     tgattgcaat tccgacaagt tttgtaagag ttgcaaaagg aagcaccata gtcttctaca      1560
     cgacgagaaa tcgagttccg ctcataagtc cgacggagtc ccaagcgatc aaacggcgaa      1620
     acctgaagaa caccaagaag ttgctgtaca agctgggtca gtgaactgtg ccacgtcgct      1680
     gatgctgaaa caacaagtgc tcctttcgac ggccgaagtg cttgtagctg ggtccggaaa      1740
     cgtcagcttg ccgtgccgtg tcctgttgga ttcgggttct gattcgaatc tcatttccga      1800
     ggcgtttgcc aagcaattgg atctatccat ggaaagcatc aacttaccga tcagcgggct      1860
     caacaacgct gaaacccgag ttaagtacaa attgcgtacc aagatcagct cacgcgttaa      1920
     tccgtttaac gctattctag acttcctggt ggttccaacg attacttcca accttccgat      1980
     gatcaaggtt gacatccggt cttggtctat tccgacgagt gtggatttgg cagatccatc      2040
     attccatgtc cctaaggaaa tccagatgat catcggggca gaacttttct ttaccctcgt      2100
     gaagaacggc cgcatcaagc ttgcagatgg gaatccaatg ttagtggaga ccgatctggg      2160
     ttggatcgtc agtggtcccg tgaaggggca cccaagcagt ccgcaaggaa gcatttgtca      2220
     cctcaatcta cgtgaagagc agattaaccg cactctggtg aaattctggg aattggaaac      2280
     tgttcaggaa gcatcgccac tgacatcaag ggagcaagcc attgagaagc atttccagct      2340
     aacacatttt cgtgacgatt caggtcgata cattgtgaga ttgccattca acgataacaa      2400
     gagtcaactc ggcgactctt taaacatcgc ccgaaaccga ttcgatcgtc tactgcgatc      2460
     gttttgcgac gaaaagaaga agactcgcta tacggagttc atgtctgaat accaagcatt      2520
     aggccacatg gtggaagtgt tcgacaatcc agtcgacttc tattttttgc cccatcatgc      2580
     tgtgtacaaa gagtctagca cgactacaaa aatccgtgta gtttttgacg cttcggcgaa      2640
     gaccacgtct ggtcattcgt tgaacgatgc tttggatgta ggaccgacag tgcagaaaga      2700
     cttgatcacg attctcttgc gcttttgctg ttttccggtt gtattaactg cagacatccc      2760
     gaagatgtac cgccaggtac aaatccatga ggacgaccgg aaataccaac gaatcctttg      2820
     gctcaactcg aaaaacgaaa tagggacctt cgaactgacg actgttacgt acggttgttc      2880
     tagcgcgcct tacctggcga cacgtgctct aatgcaattg gcgaaagacg aagcttcgga      2940
     gttgcctgtt gcagcaaaag tgatcgaaga aaacagttac attgatgatt ttctcaccgg      3000
     aggaaacaca gatgaagaag taatcgaaat ctacgagcag ttgacggaga tgctacgacg      3060
     aggtggattt ggagtccaca aattctgcac caacagtgaa atcattcgga accgtattcc      3120
     gacagagctc caagaaatgc aagccaactt cgaagatagt gacatcaaca gtgcaatcaa      3180
     gacactgggc ctcatctgga accaacatga agattatttc cgtttcaacg ttgcaccgct      3240
     tgacgaaaca gtgccgacca aaagaattgt tctatctgca gtcggccagc tcttcgaccc      3300
     gtgcggttac cttggtccag tcatcacaat ggcaaagatg cttatgcagg atttatggcg      3360
     gctgaaactg gaatgggatg atgtattacc ggatgaacaa atgaaaatgt ggaacgactt      3420
     tcgaggacag ctaccaatgg tgaataattt gcagaaaaaa cgatgtgttg ttacgggcga      3480
     cgctaaagga gtggagcttc acggatttgc agacgcgtcc cttcgcgcat acggggcagt      3540
     attgtacacg aggtgcatct ctcccgatgg aaccgtcgaa gtcaacctgg tatgcagtaa      3600
     atcgcgcgtg gcgcccctca aaccaatgac gattccacgc ctggagttgt gtggagcgct      3660
     gcttcttgct cgactggtgg ataaaacgat atcagcaatg aaaatcccgt tcaagagtgt      3720
     tacacttcat cttgattcgc aagtagtgtt atgctggctg gaaaaatcac cgcttgctct      3780
     gaatcaattc gtttcgaacc gtgttgccga gatactcgag ttgacgcaat cctataattg      3840
     gcaatcagta cgatcagagg aaaatccagc agatttgatt tcgcgaggtg tgtttcctgc      3900
     agagcttttg acgatggaga aatggtggaa atcatctcac gttttgtggg aacatactcc      3960
     tagctacaac gaaggcagaa tccacttgaa cgacaatgaa cttcctgaac tcaaaccagc      4020
     ggtagtggtc gctgctactg tgtagaagaa gccgtcgatt gacatgacca gattaagcaa      4080
     ctttcgtcga ctacaaagag cgtgggcgtt tgtattgagg ttcatcaaca acgtccgcac      4140
     caaaactcgt gatacttcgc cactcagggc gcaagaaatg gcagatgcac tgcatgcggt      4200
     catgaagata acgcagaagg atgaatttca ggatttgttc catgctttgc aaagcaatga      4260
     caagaaacgg aacaggtaca gtggactggc tccattcgta ggcacggatg gcctaatcag      4320
     agttggtggc agattgaaat attcatcgat cccgtatgac ggaaagcacc agatcctgtt      4380
     gcccgaaaaa caccatgtga ctgtcacgct tatccgccaa ttacatgaag acaatttcca      4440
     cgtcggacag cgcggattgc tttcgattgt ccgtgaacga ttttggcctg taaacgcaaa      4500
     gatgttaata aagagaatca tttcgaaatg ttacgtgtgc tctcgcaaca acccacaccc      4560
     agtgactcaa tatatgggaa atctgccgaa ttacagaata accccggcgc cagtattctc      4620
     taacaccgga gtcgattatg cgggcccaat atacctcaag gaagcaggaa ggaagacagt      4680
     agtgtacaag gcgtatattt gcgtttttgt atgtatggcc actaaggcca tccatctaga      4740
     ggtggtttcg agcttaacgg ctgggaattt catagctgct ctacagcggt tcattagcag      4800
     gcgtggaata gttgctaatc tttattccga taatggcact acgttcgtag gcgctaatca      4860
     tgagctggcg gctttacgcc aactattcga ggatcaagca acccaaagga agctgaatga      4920
     tttctgtgtc tccaaaggta ttcaatggca cttcatacct ccgcgcagcc cccacttcgg      4980
     tggcatctgg gaggctggcg tgaagtcagc gaaatatcat ctgaaacgag ttgttggcga      5040
     gacaaaacta acttttgaag aaatgtcgac attcctgacg caatgtgagg ccatcctgaa      5100
     cagccggcct ctaattccga tttccaacga ccccaatgac gttgaagtgc tgacgccatc      5160
     acacttcctt atccaaagac cagctttgag cattccggag ccatcatacg aagaggtgaa      5220
     gattggccga ctcagtcgtt ggcaacatgt ccagctcatg aaggaacact tttggaagcg      5280
     ttggtcgact gagtacctgc atcagctgca atcacgaccc aaatggaaca gcggagtgac      5340
     ggcaataacg atcggcgcga tggttgtgct gaaggacgag aacattccgc cacatcagtg      5400
     gtgtattgga cgcatcgtgg caacccatcc aggcgctgat gggattgtac gagtggtaac      5460
     catcaagact ccaacatcag aattccgaag agctgtaacg aagatttgtc tgcttccttc      5520
     ggttgagcca ggggactcaa cggggggaga a                                     5551
//
ID   BEL-210_AA-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   AAGE02017420;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-210_AA_;
KW   BEL-210_AA-I; BEL-210_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017420; Positions    7580    7382.
XX
SQ   Sequence 199 BP; 67 A; 37 C; 44 G; 51 T; 0 other;
     tgatgcgtcg cacggcgaca ctttgacgag tcccttggct gaagtattga gagagagaga        60
     gaagaaggtg aacatgagaa aagttctttg tcttttttga atcagttaaa ataaacgctt       120
     tatacctaaa gcacgcgatt ttattgaagc accgagaatc cgtctgaaac caaacccatc       180
     tgagctaaat taatgaaca                                                    199
//
ID   BEL-211_AA-I repbase;    DNA;    INV; 5568 BP.
XX
AC   AAGE02024031;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-211_AA_;
KW   BEL-211_AA-LTR; BEL-211_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5568
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024031; Positions   20918   15351.
XX
CC   Positions [4621-5181] - Integrase core
CC   'CTGAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5568
FT                 /product="BEL-211_AA-I_1p"
FT                 /translation="MMPPLAPPPERSCSMCQSEDDSQMVCCDKCSNWFHFD
FT                 CVGVTEDIANHPWICPSCVKANTMNPVSGSTPVPISAPSSSSASNIPAPPV
FT                 PPVVIAPSASPMQPIQLSVELQLKMLEEERALERRYLQRKYQLMMEASGSG
FT                 TTSFPQPSTNAMPDDSFRMPPCHSSPLRPPPATAPELHLLEGTGGANETAL
FT                 LNSSQIAARHAVAKELPVYSGEPEEWPLFIATYENTTRLCGYTPEENMVRL
FT                 QRCLRGKALEAVKCQLLHPANLEHALSTLKMLFGRPEIIVHCLIEKINKIP
FT                 APKADRLNTLVDFALAVRNMVATVRACNLEEHLYNISLLQGLVEKLPTMVK
FT                 LNWATHRVRLQRVSLSEFSDWLYTVAEAASTVTMSSTPPHVYEGKPRRSGN
FT                 REDGFLSLHAEHQQESTWTQRMSTGCVVCQRSCNAVEFCPQFLNLNHSDRW
FT                 ATLRDHKLCRTCLGVHRGPCRSNDICGKNGCTFKHHRLLHNERSDSRTSVR
FT                 YSVQSEQNENANFNQHNCNTHRWNEKSILIQYVPVVLHHNGNTVHTYAFID
FT                 CGSHITLLEEELAADLNLRGEKHPLCIRWTADHCRFEDSAERVSLHVSGTG
FT                 NGENKFLLSEVFTVKDLKLPPQTLSVSKLCRKYGYLKGLPVESYNNIRPRL
FT                 LIGMNNIRLGHALDSREGNENGPIATKTRLGWTIFGTCQDDHPKPSTIPCS
FT                 FHICSHSTIADEDLHTVVKNYFALDSLGITANKQLLSVEDERALKILRSKT
FT                 RLENGRYTTSLLWKYDDVRLPNNKAMALRRHSCLLKRIKREPALGETLRKK
FT                 VADYVRKGYIRKLSYQEIHQPGNRIWYLPIFPVINHNKPGKVRIVWDAAAA
FT                 IGGTSLNSVLLKGPDQLEPLPFVLYKFRERRVAICGDIEEMFHQVRIDEVD
FT                 QQSQRFLFQDKPDAPEPDEYVMNVMTFGATCSPSSAHFVINENAERFAGQL
FT                 PAAAGAIRKCHYVDDMLASVDTEPEAIQLAKDVRFIHQQGGFKMRGWISNS
FT                 STVTEALNGENVSDKNLDLIKEVALEKVLGMWWNTDTDEFQFKLSKERHVD
FT                 LLSGAKYPTKRDILSMLMSIYDPLGLIANFLMPLKLLLQEIWRSGVSWDEP
FT                 IEFLHMQKWKSWLSYLPQAGSVRIPRCYNIRLSYDQLNIELHTFVDASELG
FT                 YCAVAYLRFEKAGQVDCVLVGAKTRVAPLKFVSIPRLELQAAVVGTRLAKS
FT                 IQEGHSISITQRYFWTDAADVLCWLRSDHRAYSQFVAFRISDILESSDIAE
FT                 WKYVPTKENVADEGTKNQRQLKLGSDSRWRRGPPFLWGPKNTWPVESPSKK
FT                 MTTLEMRPSMLHHTVIPVRDCLQPNTFSDWLRLRRITALVARFPMNIRKKI
FT                 AGEPIVVGTLTCTELLQAEVYHYKRAQYDVYADEMALLSTHEKGKQILPKG
FT                 NRLYKLTPTIDNDGVLHIHGRIDACDYVGKNTKYPIVLPRGHALTRLILQS
FT                 IHEEYHHHCHETFVNEVRKKFYIPKIRMECRSIRSNCQQCKVRRAQPNPPA
FT                 MGDLPVARLAAFVRPFSYIGVDYFGPFHVAVGRRVEKRWGVLVTCLTVRAI
FT                 HIEVAHSLNTDSCIMALRNCFARRGVPIQIISDRGTNFIGAEKELKKALEL
FT                 VDQDAMIKKFTTSSTSWTFNPPATPHMGGSWERLIQSVKKVLYDIQPHRVP
FT                 RDEVLKNTLIEVENIVNSRPLTHVPIDDESSPALTPNHFLVGSSNGLKPLV
FT                 PFDDCATALKQSHKTSQILANFFWKRWINEYLPNITRRTKWFAPVKPITIG
FT                 DIVVIVDPKQPRNCWPKGRVLATTLSKDGQVRQATVQTSGGIFQRSAVNLA
FT                 VLDVGAKRSESDQGPITGGD"
XX
SQ   Sequence 5568 BP; 1604 A; 1364 C; 1289 G; 1311 T; 0 other;
     aattaaaatt ttcgtttcac ggattactca aggagtgtct acatgatgcc acctctcgct        60
     ccacccccag agcgaagctg ctctatgtgt caatctgaag atgacagtca aatggtttgc       120
     tgcgacaagt gtagcaactg gtttcatttc gactgtgtcg gggtgacaga ggatattgct       180
     aaccacccat ggatttgccc gagctgcgtc aaggccaata cgatgaaccc cgtgtctgga       240
     tccactcctg tgccgataag tgcgccgtcg tcatcatcag catcaaacat acctgcacca       300
     ccagtaccac cagtagttat agcaccatcc gcttcgccca tgcaacctat tcagctgtca       360
     gtagagctgc agctaaagat gctcgaggaa gagcgtgcgc tcgaacgaag gtacttgcag       420
     cgtaaatacc agctaatgat ggaagcatct ggatcaggaa caacgagttt tcctcagcca       480
     agcacaaatg ccatgccaga tgatagtttt cgtatgccac catgtcactc ctctccgtta       540
     cggccacctc ccgctaccgc ccctgaactc cacctccttg aaggcacagg tggggcaaac       600
     gagacagcat tgctaaattc cagccaaatc gcagctcgtc acgcggtcgc gaaggagcta       660
     cccgtctaca gcggagaacc agaagagtgg ccactattca ttgccacata cgaaaacact       720
     acaaggctat gcggatacac gccagaggaa aatatggtcc gactacagcg gtgtctacgc       780
     ggaaaagcgc tggaagcagt caaatgtcag ttactacacc cggcaaattt ggaacacgca       840
     ctttctactt tgaaaatgct cttcggacgc ccggagatta tagtgcactg ccttattgaa       900
     aaaatcaaca aaatccccgc acccaaggca gacaggctca atacgcttgt agattttgct       960
     ctggccgtgc ggaatatggt ggccaccgtg agagcctgta acttggagga acatctctat      1020
     aacattagtc ttcttcaagg tctcgttgaa aaactaccca cgatggtaaa actaaattgg      1080
     gcaacacacc gtgtacgtct acagagggtt tccttgtccg aattcagcga ttggctgtac      1140
     actgtggcgg aagcagcgag taccgtaaca atgtcatcta cgccaccaca tgtttacgaa      1200
     ggaaagcccc gtagaagcgg taatagagaa gatgggttcc taagtcttca cgccgaacat      1260
     cagcaagaat ccacctggac acaacggatg agtactggtt gcgtagtttg ccaaagatct      1320
     tgtaacgccg tagagttctg cccacagttt ttgaacttaa accattccga tcgttgggca      1380
     acattgcgtg accacaagct atgccgcact tgccttggtg tccaccgagg accgtgtagg      1440
     tcaaatgata tctgtggcaa gaatggttgc acgtttaaac atcaccgtct gctacacaat      1500
     gaacgtagtg attctcgtac aagtgtccga tattcggttc aatccgagca aaacgagaat      1560
     gctaatttca accagcataa ttgtaacaca cacaggtgga acgaaaagtc gatactgatc      1620
     cagtatgtcc ctgtagtgct ccatcacaat ggaaacactg tgcacaccta tgcatttatt      1680
     gattgtggat cgcatatcac gttactagaa gaagagttgg ccgcggatct gaatcttcgc      1740
     ggagaaaaac atcctctgtg catccgatgg accgccgatc attgccgttt cgaagattct      1800
     gcagaaagag tctcgctcca tgtatctgga actggaaatg gggaaaacaa atttctgctc      1860
     tcagaggtgt tcaccgtaaa agacctcaag ctaccaccgc agacactctc cgtatcaaag      1920
     ttgtgcagaa aatatggtta tttaaaaggt ctgcccgtag agtcatataa caacatacgc      1980
     ccacgcttgc ttatcggtat gaacaacatc agactcggtc atgcgctgga tagtcgagaa      2040
     ggcaatgaaa atggacccat cgccacgaaa acaagactgg ggtggacgat tttcggaact      2100
     tgtcaagatg atcatcccaa gccgtctact attccctgca gcttccacat ctgttcacac      2160
     tctaccatag cagacgagga tttgcacact gtagttaaga actattttgc ccttgatagt      2220
     ttgggcatca cggcaaacaa acaactacta tcggtggaag atgaacgagc cctgaagatt      2280
     ctacgttcca aaacgcggct cgaaaacggt cgatacacga caagcctcct gtggaagtat      2340
     gatgatgtac gtctacccaa caataaagcg atggctttaa ggcgtcacag ttgtctcttg      2400
     aaaaggatca aaagagaacc ggctctaggt gagacactga ggaaaaaagt ggccgactac      2460
     gttcgaaaag gatatattcg caagctgtca tatcaggaga tacaccaacc aggcaatcgt      2520
     atttggtacc tgccaatttt tcccgtcatc aaccacaaca agccaggcaa agtacgtatt      2580
     gtgtgggacg ccgccgcggc tataggcggc acatctctca actccgttct ccttaaaggc      2640
     ccagatcaac tggaacccct accgtttgtt ctatacaaat ttcgagaacg ccgggtggca      2700
     atatgtggtg acattgagga aatgttccac caagtcagaa tagacgaggt ggatcaacag      2760
     agccaacgat ttctatttca agacaaaccg gatgcccctg agccagacga atacgttatg      2820
     aatgtcatga cgtttggagc cacttgctcg ccaagcagcg cgcacttcgt catcaacgaa      2880
     aatgctgaac gtttcgctgg tcaactacca gcagcagccg gagcaattcg gaagtgtcac      2940
     tacgtggatg acatgttggc tagcgtcgac acggaaccag aagccatcca gctagcaaag      3000
     gacgtacgct tcatccatca acagggtgga ttcaaaatga gaggatggat ttcaaattct      3060
     tcaacggtta cagaagcact caacggcgaa aacgtttccg ataagaactt ggaccttatc      3120
     aaagaggtcg ccctggagaa ggtgttaggt atgtggtgga acaccgacac agacgaattc      3180
     cagttcaaac tatcgaaaga gcgccatgtg gacctgttat ccggtgctaa gtatccgacc      3240
     aagcgagata tacttagtat gctcatgtcc atctacgatc cactaggcct tattgctaat      3300
     ttcctcatgc ccctgaaact attgctacag gaaatttggc gatcaggcgt gtcctgggac      3360
     gagccaattg agtttcttca tatgcaaaag tggaaatcat ggttgagcta tttgccacaa      3420
     gctggatccg ttcgaattcc tcggtgttat aatatcaggc tctcatatga ccaactaaac      3480
     atcgagctgc atacatttgt ggacgcaagc gaactcggtt actgcgctgt tgcttatcta      3540
     cgatttgaga aggctggaca agtcgattgc gttctagtgg gcgccaaaac gagggtggca      3600
     ccactcaaat ttgtttcaat accgcgcctg gaacttcaag cggcggttgt cggcacccgg      3660
     ttagccaaga gcatccaaga agggcactcg attagcataa cgcaacgcta cttctggaca      3720
     gacgctgcag atgtactgtg ttggcttcgt tcggaccacc gggcatactc gcaattcgtt      3780
     gcatttcgga taagcgatat tctggagtcc agtgatatag ctgaatggaa gtatgtacca      3840
     accaaagaaa atgttgcaga cgaaggtaca aaaaatcaac gacaacttaa acttggttct      3900
     gacagccgat ggagaagagg gccccccttc ctctggggac caaagaacac ctggccggta      3960
     gaatcacctt ctaagaagat gaccacacta gaaatgcggc caagtatgct tcatcataca      4020
     gtgatcccag ttcgcgactg tttacaacct aacacgtttt ctgattggct tcgtttgcga      4080
     cgcattactg ctctagttgc aaggtttcca atgaacataa gaaagaaaat tgcaggagag      4140
     ccgatcgttg ttggtactct aacatgtaca gaacttctac aggcagaagt ataccactat      4200
     aaacgtgccc aatatgacgt ctacgcagat gaaatggccc ttttgagcac ccacgagaaa      4260
     ggtaagcaga ttctgccgaa agggaaccga ctgtataagc taaccccaac aatcgacaat      4320
     gatggtgtcc tccacatcca tggtcggatc gatgcatgtg attacgtcgg caaaaatacc      4380
     aaatacccga tcgtgttacc acgtggacat gcactcacaa gactgattct ccaaagcatt      4440
     catgaggagt accatcatca ctgccatgaa acgtttgtca acgaagttcg caaaaagttt      4500
     tatatcccca agattcgtat ggaatgcaga agtatccgct ctaactgcca acagtgtaaa      4560
     gtacgtcggg cacaaccaaa tccacctgcg atgggcgatc ttcctgtagc acgcttagca      4620
     gcatttgttc gcccattttc gtatatagga gtggactatt ttggcccttt ccatgtagca      4680
     gttggtcgca gagttgaaaa acgttggggc gttctagtaa catgccttac cgttagagct      4740
     attcacatag aagtagctca ttcacttaac acggattcgt gcattatggc attgcgcaac      4800
     tgctttgcac gtcgaggagt ccctatccaa attattagtg accgtggtac caatttcata      4860
     ggcgccgaga aggagcttaa aaaagcgcta gaattggtcg atcaagacgc aatgataaag      4920
     aagtttacta cctcgtcaac atcgtggaca ttcaaccctc cagccacacc acatatgggc      4980
     ggatcctggg agaggttgat acaatcagtg aagaaggtcc tttatgatat ccagccacat      5040
     cgagtaccaa gagatgaagt actgaagaac acacttatcg aggttgagaa tatagtgaac      5100
     agcagacctt tgacacatgt gcccatagac gacgaatcat caccggcgct aactcctaat      5160
     cattttttag tgggatcgtc gaatggtttg aaacccttgg tgcccttcga tgattgtgca      5220
     acagcgctta agcagtccca caaaacctcg cagattctcg ctaacttctt ttggaaacgt      5280
     tggatcaacg aatacctccc aaacatcact cgtcggacaa aatggtttgc tccggtaaaa      5340
     cctataacga tcggagatat agttgttatc gttgacccta agcaaccaag gaactgctgg      5400
     ccaaaaggga gagtgttagc tacgactctt tcgaaggatg gacaagttcg tcaagctact      5460
     gtacaaacat ctggagggat ttttcaaaga tctgcagtaa accttgctgt gctagacgta      5520
     ggcgcaaaaa ggagtgagtc ggaccagggt ccaatcactg ggggggac                   5568
//
ID   BEL-211_AA-LTR repbase;    DNA;    INV; 666 BP.
XX
AC   AAGE02024031;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-211_AA_;
KW   BEL-211_AA-I; BEL-211_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-666
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024031; Positions   15350   14685.
XX
SQ   Sequence 666 BP; 237 A; 110 C; 115 G; 204 T; 0 other;
     tgttgcgtac gcccctcgtg cgacgctgca cctactcagc aacctaattg aaatgtttcg        60
     atgacattga ctgtcaatgt actgtctgat gacatgactg tcaatgtact gtcaggagaa       120
     aagtgataaa gggacaaaga gtcataccat gcattacgag ctacaacgtg aattcttata       180
     ctaaaataat ttgatatttt ctaattaaaa tactaaagct attgtgaatt gattattatc       240
     taaattgaaa ctagtaggta taaaataagt ctaaatttga attccatcta aaaattgcaa       300
     tattatctac taggttcgtt gctgatttaa ggttagattg acagaatgac agtgcggtaa       360
     actaaatgat ttgctaaaat taaggtaaat aatttgctgc tttgaattat ggtcaaactc       420
     aacatggatt aatttaaaca gattagatac cgcaaatatc atcaagcgct ccttagaatc       480
     cgggtaacaa tattcgatta cgtaaatata gctgaactca cgaaacgtag gttaaccaaa       540
     aaatcaccca gactgaatta aactaatgaa atttataact gctattgtag gaaaatttta       600
     accgttcccg ttgaataaac gagttgaaaa tcccggatat agttcgctgt cgttactgct       660
     gtaaca                                                                  666
//
ID   BEL-212B_AA-I repbase;    DNA;    INV; 6380 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 24.01, Created)
DT   05-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212B_;
KW   BEL-212B_AA-I; BEL-212B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6380
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6380
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 91-91 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..1159
FT                 /product="BEL-212B_AA-I_1p"
FT                 /translation="MSSRTLRSGKVVGGTNSANLRANGGVQVVVTAVPEES
FT                 HPGRTCQVCRGLDSVEMVQCDECSKWHHFQCVGVTQQIEHFPWSCTKCESA
FT                 KGVQECSSSAALPQGNGGPSGQSSKSHLNRLSVPLQSQLQHQHQQQSQPTP
FT                 PQQQHDMTGSQLSLSLAANESNQQPKGANQGPFVSSLQWVVSPSRDGSKAP
FT                 SVSSSRSSQAVARLKLQMLEEMRVVERREADRQYAIAAEEAKREKAFLEQK
FT                 YQLLEQAMSENGSSKNGSMSRTQHWIATTNAHRDGLIASQAEEAVDPNMHV
FT                 GKMQLWNPTNAQIGSIRSSLPEPSPPEPFPAPESMLSCPISPPALTAGIQQ
FT                 LALGSTHQLLFWNSLGRSQYTNLHDEFR"
FT   CDS           1021..6345
FT                 /product="BEL-212B_AA-I_2p"
FT                 /translation="VHAELPHKSTGTDCWNTAVSSRLDTSTPFLEQPRTFP
FT                 IYEPPRRVSIAQLPHSGGQGVPAPNGTKSIGMDPSRRLSQNVSVPDYQRFV
FT                 PPSNRPTVHHQTNPYSSTMRDYRDYNQEEETDPFPISRKQLAARQAISKDL
FT                 PTFSGNPEEWPLFLSTFNSTTALCGFTNDENIVRLQRCLKGRAYEAVKSRL
FT                 LHPSNVSGVISTLKMLFGQPEVIVHSMMSKINSLPTLREDKLELIVDFAVS
FT                 VQNFCATVDACGLEEYFYNITFLHQLVNKLPPSIKLNWAQYRISLPTVNLQ
FT                 SFSNWLYQLAEAASAVAIPNTIFESKPVRSDSRVGKKSNSFVNSHSEEAPS
FT                 TATDEANSCLVCKGSCRSIPKCERFLELSRDSRWATVRDLGLCRRCLRQHS
FT                 GGCQAKPCGRNGCELRHHELLHNEQKRAPLSSNTSASDASKPLSNQSLQST
FT                 PPAPNSNEHGCHTHQVTSSHVLFRYLPVVLHGKNRSIETFAFLDDGSELTL
FT                 LDQDLADELQLKGETAPLCLLWTGGAKRREEGSKSVQLEIAAKHNGSKKYA
FT                 MHGVRTVAELLLPPQTLNFEELFEQYPHLRGLPITSYQDVRPKILIGMKDQ
FT                 HLSLVQKSREGSIHEPIAVKTRLGWTICGEGNRYNVANQIHSVFHICACDS
FT                 SSDEDLHKMMKEYFAVDSLGVVQPKKRLLSAEEERAQILLETRTVLKGNRY
FT                 ETGLLWRYDNVRLPDSFPMALRRLKCLRKRMDKDSLLADQINRKISDFVEK
FT                 GYARKLTKAELSQSFPRTWYLPIFPVTNANKPGKIRMVWDAAAEVHGMSLN
FT                 TALLKGPDQLCELFTILVQFREGRVALTGDVREMFLQVLMRPDDQQCQRFL
FT                 WYDEDGTLSVYVLQVMTFGACCSPSSAQFVKNLNAERFKGEYPAAVEVIQK
FT                 RHYVDDMLVSVTTEEEAIELAQQVKKVHSEGGFEIRNWLSNSKRVVDALDE
FT                 SHTEEKSLDLSSELATEKVLGMWWCTDLDTFTYKVGWDRYGRALLEGKHRP
FT                 TKRQMLRVLMSVFDPLGLIAQVLMYLKILLQDVWRSGIGWDDQVDDTIFER
FT                 WQTWLEILPQIEQISIPRCYFSTRSIDTKRVQLHTFVDASENGFAATCYLR
FT                 FNHDDDVECNIVAAKTRVAPLKFLSIPRLELQAALIGARLARSLTEALKIQ
FT                 ISRQVFWSDSQDVLCWIKSDHRRYSPFVAFRISEILELTEITEWRYVPTAL
FT                 NVADDGTKWKGLPDLQPRARWFIGPQFLYLPEDLWPRASRGSNTADLELRP
FT                 SAMSHFITTDPIVRVNDFSSWSRLVRVVGFVHRFSNNCKLKRQKKAISTGP
FT                 LTTQEISSAEVHLLCQTQLEGYPDEVALLQRAQHEPESSNTSLPKTSPLYQ
FT                 KSPWLDQNGVLRMRGRIAYCDYASEDAKHPVILPRDHPTTRLIIAYFHQKF
FT                 HHQNHETVINEIRQKYSIPKLRSAFANVRNNCQRCKNHRAVPNVPKMADLP
FT                 AGRLEAFSRPFSHVGVDFFGPYEIVIGRRVEKRWGMLATCLTTRAIHIEVA
FT                 HSLSTDSCVMALRNLISRRGKPRVIYSDRGTNFIGANREMNEAKLAIDQVE
FT                 IMKEFVDADTTWQFLPPSSPHMGGSWERLIGSVKKNLMAILPCRKLSDEVL
FT                 RNLFTEVENIINSRPLTHVPVDDDSAPALTPNHFLLGSSNGVKPLCTIDDR
FT                 GESLRQCWRLSQLQANRFWKRWITDYLPEITRRTKWFVDTKPIEINDVVVI
FT                 VDPKLPRNCWPKGRVICTHPGRDSQPRSATVRTATGMYERPVAKLAVLDVR
FT                 RVEE"
XX
SQ   Sequence 6380 BP; 1746 A; 1628 C; 1530 G; 1476 T; 0 other;
     aattattatt ttcgtttaat tacgaaaact tggattaaat tcagtcatgt cgagtcgaac        60
     cctacggtct ggcaaagtgg ttggtggcac taatagtgca aatcttcgtg caaatggtgg       120
     tgtgcaagtg gtggtcacgg cagtgccaga ggagtcacat cccggtcgaa cttgccaagt       180
     atgccgtgga ctggattcag tcgagatggt gcaatgcgac gagtgttcca agtggcatca       240
     cttccaatgc gtaggagtca cgcagcaaat agaacatttt ccatggagct gtaccaaatg       300
     cgaatctgcg aaaggtgtcc aggaatgcag ttcttctgca gctcttcctc aaggaaacgg       360
     tggtccttca gggcagtcgt ctaaatcaca cttgaatcgg ctctcagtac cgctacagtc       420
     tcagcttcaa caccaacacc agcagcagtc acagccaacg cctccgcagc agcagcatga       480
     tatgacaggt agtcaactat ctctttcgct ggcagctaat gaatcgaatc aacaacccaa       540
     aggagcaaat caaggaccgt tcgtcagctc gctgcaatgg gtcgtgtcgc cgtctcgaga       600
     cggatctaaa gctccatcag tgtcatcaag tcgctcttcg caagctgtcg ctaggctgaa       660
     acttcaaatg ctggaagaga tgagggtcgt cgagcggcgt gaagcagatc ggcagtatgc       720
     aattgcagcg gaggaagcaa aaagagagaa ggcattcttg gagcagaagt atcagctgct       780
     ggagcaagcc atgagcgaaa atggctcgtc aaagaacggt tccatgtcca ggacgcaaca       840
     ctggatcgca acaacgaatg cacaccgcga tgggctgata gcttctcaag ccgaggaagc       900
     agtcgatcca aatatgcacg ttggtaagat gcagctttgg aatccaacaa atgcgcagat       960
     tggtagcatt cgatcgtcac tcccagaacc aagtcctcct gaaccatttc ccgcccctga      1020
     gtccatgctg agctgcccca taagtccacc ggcactgact gctggaatac agcagttagc      1080
     tctcggctcg acacatcaac tccttttttg gaacagcctc ggacgttccc aatatacgaa      1140
     cctccacgac gagtttcgat agcgcagcta ccgcattctg gtggacaagg agtacctgca      1200
     ccaaatggta ccaaaagcat aggaatggac ccatctcgtc ggttgtcaca aaatgtgtcg      1260
     gtaccagact atcaacggtt cgttccacct tcgaatcgac caacagttca tcaccaaacc      1320
     aatccctatt catcaaccat gcgagactat cgagactaca accaagagga agaaactgat      1380
     ccatttccga tttctcggaa gcagttagct gcccgacaag ccatttcaaa ggaccttcca      1440
     acgttttcag gaaacccaga agagtggcct ctgttcttgt cgaccttcaa cagtaccact      1500
     gctctatgtg gattcaccaa cgacgaaaac atcgtccgtt tgcagcgatg cttgaaaggt      1560
     cgagcgtatg aagcggtaaa aagccgactg ctacaccctt ccaatgtcag cggggtcata      1620
     tcgacgctca agatgctttt tgggcaaccg gaagttatcg tccactcgat gatgtcaaag      1680
     atcaactcac ttccaacatt gcgagaggac aaattagaat tgatcgtgga ttttgccgtc      1740
     agcgttcaaa acttctgcgc aacagtggat gcgtgtggat tggaagaata cttctacaat      1800
     ataaccttcc tccaccagct cgtcaacaag cttccaccat caatcaaatt aaattgggcc      1860
     cagtatcgga tatcattacc gacggtcaat ttgcagtcgt tcagcaactg gctctaccaa      1920
     ctagcagaag ctgcaagtgc cgtagctatt ccaaacacta ttttcgagtc caaacccgta      1980
     cgtagcgact cacgtgtggg caagaaaagc aactcgttcg tcaactctca ctccgaagaa      2040
     gccccatcca ccgctacaga cgaagctaat agctgtcttg tatgcaaagg aagctgtagg      2100
     tctattccca aatgcgaacg tttcctggaa ctctctcgtg attcccgctg ggcaactgtt      2160
     cgagatcttg gcctctgtcg tcggtgtcta cgtcaacaca gtggtggatg tcaagcgaaa      2220
     ccttgtggaa ggaatggctg cgagctgagg catcacgaat tgctgcacaa cgagcagaag      2280
     agagcaccac tgtcgtcaaa tacttctgca agcgacgcaa gcaaaccatt atctaatcaa      2340
     agtctacagt caacaccacc agcgccaaat tcgaacgagc acggatgtca tacccaccag      2400
     gtcacctcta gccatgtgct gtttcgctac ctacccgtag tacttcatgg aaagaatcgc      2460
     tcgattgaaa catttgcctt tctggacgac gggtcggaac ttacactgct tgaccaagat      2520
     cttgcagatg agctgcaatt aaagggagag acagcgcctc tatgtctgct ctggactgga      2580
     ggagcgaaac gtcgagagga gggctcaaag agtgttcagc ttgagatagc cgcgaaacat      2640
     aacggatcca agaagtatgc catgcatgga gtacgcacag tggccgaact tcttctccca      2700
     ccgcaaacgc tcaacttcga agagctgttt gaacagtacc cgcaccttag aggcctgcca      2760
     atcacctcct atcaagatgt tcgaccgaaa atccttatcg gaatgaagga ccagcacctc      2820
     agccttgttc aaaaaagccg cgagggatct atccacgagc cgatcgctgt caaaactcga      2880
     ctaggatgga caatttgtgg ggaaggcaat cgttataatg ttgcaaacca gattcattca      2940
     gttttccaca tctgtgcctg tgactcgtct tcggacgaag acttacataa aatgatgaag      3000
     gagtattttg cagtggatag cctgggagtt gttcaaccga aaaaacgtct cctctcggca      3060
     gaagaagagc gagcgcagat tctgctcgag actcgcacag tgctaaaagg aaaccgatat      3120
     gaaacgggtt tattgtggcg atacgacaat gttcggctgc ctgacagttt tccgatggcc      3180
     ctccgacgac tgaagtgcct cagaaagcga atggataaag actctctgtt agcggatcaa      3240
     atcaacagga agatcagcga ttttgttgaa aagggctatg ctagaaagct cacaaaagca      3300
     gaactttccc aaagcttccc ccggacgtgg taccttccta tatttcccgt aacgaacgcc      3360
     aacaaacctg gaaagattcg gatggtgtgg gacgcggcag cagaagttca cggtatgtca      3420
     ctgaatacag cgttgctcaa gggaccagat caactctgcg aactgttcac tatacttgtc      3480
     caattccggg aaggacgtgt tgctctaact ggagacgtgc gtgaaatgtt cctgcaagtg      3540
     cttatgcgtc cggatgacca gcagtgccag cggtttctct ggtatgacga agatggaacc      3600
     ctctctgtct acgttctcca agtgatgaca ttcggagcgt gttgttcccc tagtagtgct      3660
     caatttgtga agaacctgaa cgccgaacgt ttcaagggcg agtatccagc ggccgttgag      3720
     gtgatccaga agcgccacta cgtcgatgat atgctggtga gtgtgacgac agaagaggaa      3780
     gcgattgaac tcgcacagca agtgaagaag gtgcattcag agggtggttt tgaaatccgt      3840
     aattggctca gcaactccaa gcgtgtcgtc gatgccctag atgagagcca cacagaagaa      3900
     aaaagcctcg atttgtcatc ggagctagcc acggaaaagg tactcggtat gtggtggtgt      3960
     actgatttgg atacctttac atacaaggtc gggtgggatc gttacggtcg agcgttatta      4020
     gaaggtaaac accgtccaac gaaacgacag atgctgcgtg tactcatgtc agtattcgat      4080
     ccacttgggc ttatagccca ggttcttatg tacctaaaaa tcttgctaca agatgtctgg      4140
     cgctctggca tcggctggga tgatcaagtt gatgacacta ttttcgaacg ttggcaaaca      4200
     tggttggaaa ttctcccgca aatcgagcag atcagtattc cacggtgcta tttcagtact      4260
     cgaagcatcg ataccaaaag ggtgcaactt catacctttg tcgatgccag tgaaaacggt      4320
     ttcgcagcaa cttgctacct tcgattcaac catgatgacg acgtggagtg caatatagtt      4380
     gctgccaaaa cccgagttgc gccgttgaag ttcctttcta tacctcgact ggagcttcaa      4440
     gctgccttga ttggtgcccg actggctcga tcactaactg aagcactcaa gattcagatt      4500
     tctcgtcaag ttttttggtc cgactcacaa gatgtcctgt gctggatcaa atctgatcac      4560
     cgccgctact ctccatttgt ggcgttccgg attagcgaga tccttgaatt gaccgaaata      4620
     actgagtgga gatatgttcc cactgccctg aacgttgcgg atgatggtac aaaatggaaa      4680
     ggacttcccg atttacaacc tcgagcaaga tggttcatcg gtccgcaatt tctctatctt      4740
     ccggaagatc tatggccacg cgcttcgaga ggctctaata ccgctgacct cgaactccgc      4800
     cccagtgcca tgtcgcattt cattacaact gatcccatag tacgggtcaa cgatttctcc      4860
     agttggagtc gattagttag agtcgttgga tttgtacacc gtttctctaa caactgcaaa      4920
     ctaaagcgcc agaagaaggc gatctcaacc ggtcctctaa ctactcaaga aataagttcc      4980
     gctgaagtac acctactttg tcagacgcaa ctggagggtt atcccgatga agttgctctt      5040
     cttcaacggg cacaacacga gccagaatca tccaacacat ctttgccgaa aacaagcccg      5100
     ctgtaccaaa aatcaccttg gctggatcag aatggagttc tacggatgcg aggtcgcatc      5160
     gcctactgcg actatgcaag cgaagatgcc aaacatccag ttatccttcc ccgtgaccat      5220
     cccaccacaa ggctgatcat tgcatatttc caccaaaaat tccaccacca gaaccatgag      5280
     accgtaatca acgaaatccg tcaaaaatac agcattccga agcttcgttc agcctttgcc      5340
     aatgtccgaa acaactgcca acgctgcaaa aaccaccggg ctgtcccaaa tgtaccgaaa      5400
     atggcggatt taccggcagg ccggcttgaa gccttctcac gtccgttttc ccacgtcggc      5460
     gttgatttct tcggaccata cgagatcgtc atcggccgcc gagtagaaaa gcgttggggt      5520
     atgctagcca catgtctcac gactcgcgca attcacattg aagtcgctca ttctctcagc      5580
     acggattcgt gcgtcatggc gttgcgtaac cttatctcac ggagaggaaa accgagagta      5640
     atctacagtg accgtgggac gaattttata ggagcgaatc gagagatgaa tgaagcgaag      5700
     ctcgctattg atcaagtaga gattatgaag gagttcgttg acgcagatac cacatggcag      5760
     tttcttccgc cctcttcacc acacatgggt ggtagttggg aacggctaat cggcagtgta      5820
     aaaaagaatt taatggcaat cctaccatgc agaaaactgt cagacgaagt tctgcggaat      5880
     ctctttaccg aagtagagaa catcatcaac tctcgaccat taacccacgt tccagtggac      5940
     gacgactcag ctccagctct aacgcccaac catttcttgc tcgggtcgtc taatggagtt      6000
     aaaccacttt gcaccataga tgaccgtggg gagtctctgc gccaatgctg gcgcttgtcc      6060
     caattacagg ctaaccgatt ctggaagcgg tggatcaccg attatctacc ggaaataacc      6120
     cgccgcacca agtggttcgt cgataccaag ccaatagaga tcaacgacgt ggtggtgatt      6180
     gtagacccga aactacctcg gaactgttgg ccaaagggca gagtcatttg tacccacccc      6240
     ggacgagata gtcaaccaag gtctgctaca gtaagaacgg caaccggaat gtatgaacga      6300
     ccggtagcca aactagctgt actagatgta cggcgcgttg aggagtaagc tggccaaccg      6360
     gtcagcatac ctggggggac                                                  6380
//
ID   BEL-212B_AA-LTR repbase;    DNA;    INV; 810 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 24.01, Created)
DT   05-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212B_AA-I;
KW   BEL-212B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-810
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-810
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 72-72 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 810 BP; 270 A; 145 C; 147 G; 248 T; 0 other;
     tgttggcgta cctacgccag cgcgcctcta tgatttcatt ggctctacac gaccgccggt        60
     tgtacccccc gatattaggt ataaagagaa gccgaatcgg cttcgatgga tcagatgaca       120
     gcttcccaca caatgatagc ggtgagtctg tatcgttcat catcttagag aaaaacaagt       180
     tgataagagt taacagtaaa catcgtgcga aaatgttgaa ttgaaaagtt tgctaattag       240
     tgcagtaata ttatagtatt tcgctcaaca agtgattatt ttgcttatat atgtaaggta       300
     gtatctcgtt gaattatgta attcatttag ctaatcttta atgaccaatt aggaatctgt       360
     tagccaaatc cgtcatatac ctaacctaaa gtggtgaatt taatctacga attagtgtgg       420
     taaaataaca tataatcata aaatcatgca aatgcttaaa aactacctta aaattatagt       480
     acggattaaa agttcggctg gaacaacgat tcccgagtca tacggtgttt caaggacaga       540
     cagttaaaca ttgacttaac attagactgg ttcatgacca agacatagac tggactagac       600
     acaggaacaa gactaaacgt aagttgaaca cctatgattg tatgattact cataaattta       660
     caagatttat tctgtttaac tatgaaatta taatattacc catgccttgc aggaaaataa       720
     taatccccct atcagtaaat cccagaaacg gttgtttaat ttcggggtta ttatttcgga       780
     agtatcttct tctgttggcg atttccaaca                                        810
//
ID   BEL-212C_AA-I repbase;    DNA;    INV; 6376 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 24.02, Created)
DT   20-DEC-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212C_;
KW   BEL-212C_AA-I; BEL-212C_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6376
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6376
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6376 BP; 1800 A; 1578 C; 1524 G; 1474 T; 0 other;
     attttattat tttcgtttat atacgaaaac tacgggtcat gtcaagtcga accctacggt        60
     cgggtaaagt gattggtgag accaatagtg caaatggtcg tgtgcaagtg gtggtcacgg       120
     caaatccgga ggaatcccac cccggaagaa catgtcaggt ttgccgtgga ctagattcaa       180
     ccgagatggt gcaatgcgac gtgtgttcca ggtggcatca cttccaatgt gtaggagtaa       240
     cgcagcaaat agagaatttt ccctggagtt gtaccaaatg cgaatcagcg aaaggtgtcc       300
     aggaaaaaac atctccggca gctctgcttc aaggatacca tgatgtgtcg gggcagtcgt       360
     ccaaatctca tcagaatcgg ctctcagtac cgccaactca tcagtttgaa caccaaaagc       420
     agctaacaca acaccagcat caacagcgac cggagatgac agcatctcat ctaactctct       480
     caccagcagc agaagcgtcg gatcagccta aaagagcaaa tcaaggatcg tttgtcacct       540
     cgatgcagtg ggtggtgtca ccatctcgaa acggatctaa agcgccatcg gtctcatcga       600
     gtcgctcctc acaagccgtc gctaggctga aactccaaat tctggaggag atgagggtcg       660
     ttgagcggcg tgaagcagag cgacaacgtg caattgcagc ggaggatgca gagagagaga       720
     aggcattctt ggagcagaaa tatctgctgc tggagcaggc tataagcgaa aacggttcat       780
     ctaatgatgg ttcaatatcc agaacacatg attggatcgc agccacaaat gcgcaccgcg       840
     atgggcaaat agtatctcag gccgaggatc caaacatgct cgctggtaag atgcaggttt       900
     ggaatcctac aattacgcgg attggtagca ctcggtcgtc acttccagag ccaaatcctc       960
     ctgatccatt tcccgcgcct gagtccatgc tgaactgccc cataaatcca ccggcactga      1020
     ccgccagaat gcaacggtta gcccttggcg cgacaaatca agcttcgttt ccggaaccgt      1080
     cccggatgat tcccacatcc gaacctccac gtcgagtttc gataacacag ctacctcatt      1140
     ctgacgaacg cggaataact gcaccaaacg cttcacaaaa cattgaaatg gatccatctc      1200
     gtcggctctc gcataacgtg tcggtaccag actatcaacg gtttgtccca ccttcgaatc      1260
     gatcagcggt tcaacaccag agccatccgt attcatcaac aatgcgagat ttcagaaacc      1320
     ataaccaaga ggaagaggaa gaagctgatt catatcctat ctctcggagg caattagctg      1380
     cccgacaagc catttctaag gatatgccga cgttttctgg taacccggaa gaatggcctc      1440
     tattcttatc gacttttaac agcactaccg ccctatgtgg attcaccaac gaagaaaaca      1500
     ttgtccgctt acagcgaagc ttgaaaggtc gcgcgcatga agcggtgaaa agccgattaa      1560
     tgcacccttc gaatgtcagc ggaatcatgt caacgctgaa aatgcttttc gggcaaccgg      1620
     aggttatcgt ccactcgatg atgtcgaaga tcaactcgct tccaacactg agagaggaca      1680
     aattagaatc gatcgttgat tttgccgtca gcgttcagaa tttctgtgca acagtggacg      1740
     catgtggttt ggaagaatat ttctacaaca tgacctttct ccaccagctt gtcaacaagc      1800
     ttccgccgtc gatcaagttg aattgggcgc aatatcgaat aacactaccg acggtcaatt      1860
     tgtcatcctt cagcaactgg ctctactctc tagcagaggt ggcaagtgcc gtaaccatcc      1920
     caaacatcaa ttttgaatcc aaagccgtac gtagcgaatc acatgcagcc aggaagaaga      1980
     attcgttcgt caacgcacac tacgaggaag cttcgtctgg ccatcactcc gcatcgccat      2040
     acaccgcgaa ggatgcagct gatagctgct tggtatgcaa aggaagctgc aagtcgatcc      2100
     ccaaatgcga acgtttcctg gaattctctc gtgattcccg ctgggcaact gttcgagatc      2160
     taggactctg ccgccgttgc ctacgccaac acagtggtgg atgccaagcg aaactttgtg      2220
     gaagaaatgg ctgcgagctg aaacatcacg aattgctgca caacgagcag aagagcggac      2280
     ctctgtcatc aaatacttct ccgaatgacg cgagtaaacc atcaccgaat cagcgtccag      2340
     agtctatacc acattcatcg acgaagtcgg ccgagcacgg atgccacact caccagacta      2400
     cctctagtga ggtgctgttt cgctacctac ccgtagtgct tcatggaaag aaccggtcta      2460
     tagaaacatt cgcctttctg gacgatgggt ccgaactcac tctgcttgat aaggaactgg      2520
     cggatgaact gcagttagag ggagaagaaa tgccgctatg cttgctttgg actggaggag      2580
     cgaatcgtcg ggaggattta tcaaaaagcg ttcaacttga ggcgaccgcg aaacacaacg      2640
     gttccaagaa gtacgtcatg cacggggcac gcacagttgc agaacttctt cttccatcgc      2700
     agacgctcaa cttcgaagag ctgtcggaac tatatccaca tctcaagggc ttgcccatca      2760
     cctcctatca taatgttcga ccgagaatcc tcatcggcat gaaagatcaa cacctcagcc      2820
     ttgtccagaa aagccgcgaa ggagcactac acgaaccaat cgctatcaaa actcggcttg      2880
     gatggacaat ttgcggtgga agaactcgcg atattgccac taacatggta cattcggtat      2940
     ttcatatatg tgcttgtgac tcacctgagg acgaggatct acacaagatg atgaaggaat      3000
     acttcgcagt agacagccta ggggttactt cgccgaagaa acgtcttctc tccgcagaag      3060
     aagagcgggc gcagaatctg cttgagactc gcacagcact cagagagaat cgttacgaaa      3120
     ctggcctatt gtggcgctac gacgaaatcc gtctaccaga aagttattca atggcccttc      3180
     gacgattgca gtgccttaaa aagagaatgg acaatgatcc aaagttggct aatgttctca      3240
     atcaaaaaat agcggaattc atagcgaaag gatacgctag aaaacttact aatgaggaat      3300
     tgagtcaaac ctttccccga gtgtggtacc ttccaatatt cccagtcacc aatatacata      3360
     agcctgggaa aatacggatg gtttgggacg cagtggcatc atcccatgga gtgtcattga      3420
     attctgcatt gctcaagggc cctgatcaac tctgcgaact gttttctata ctgcttcaat      3480
     tccgggaagg aatggtagct ctcactggag acgtgcgaga aatgttccta caagttctta      3540
     tgcgcaatga agaccaacaa tgccaacgtt ttctttggta cgacgagaca ggaactctct      3600
     ccgtctattt actgcaagtt atgacgttcg gagcttgttg ctcgcctagc agtgcacaat      3660
     tcgtaaaaaa tttgaacgcc gagcgcttca agcgtgaata tccagcagca gtcgaagtaa      3720
     ttcacaaacg tcactacgtc gacgatatgc tgataagtgt tgagactgaa gaagatgcta      3780
     ttcaacttgc ccagcaggtg aaaaaagtac acgctgcagg gggcttcgag atccgcaact      3840
     gggtcagcaa ctctgagcgg gtagttgatg ccctacaaga gaaaccaaca gaagaaaaga      3900
     gtctcgatct atcaacggag cttgcgacag agaaggtgct cggcatgtgg cggtgtaccc      3960
     attcggatat gtttacctac aaagtgggat gggaccgtta cggacgagag ttactgctgg      4020
     gtcaacgttg tccaacgaaa cgtgagatgt tgcgcgtcct catgttcgtg tttgatccac      4080
     taggactgat tgcccagttt ctcatgtttt tgaaaatcct gctccaagat gtctggcgct      4140
     ctggatccgg ttgggacgac aaagtcgatg aagttatctt cggaaaatgg caaaagtggc      4200
     tacaaggcct tcctgaaatt gaacgtatcg ccattcctcg gtgctaccac agtaaaaaac      4260
     tacctgcggg tggagatgtg cagctacata cgttcgttga cgcgagcgaa aatggaattg      4320
     ctgctgtctg ctatttacgt tttgccgaca atcatattgt tgaatgcagc attgtagccg      4380
     caaagactag agtcgcgcca ttgaaatttc tctccattcc aagattagag ctacaagcgg      4440
     cattgattgg agcacgatta gctcagtcgg tctccaaggc tctcacgatc cagatctccc      4500
     gtcgagtata ctggtcagat tcgcaagatg ttctgttttg gataaagtct gaccatcgcc      4560
     gttactcacc gttcgtagct ttccggataa gcgaaattct ggagttgaca gagattcctg      4620
     aatggaaata cgtacccacg aagttcaacg ttgcagatga cggaacgaaa tggaaatgtt      4680
     cgccagatct caatcctcaa gcgagatggt tcaacggtcc aaaattcctg tatcatccgg      4740
     agaatcactg gccaagttca gtgaatgatt caaacactgc cgatcttgaa cttcgcccga      4800
     gtgctatggc acactttgtc caacctgcgt ctgtgatgca attcagcgat ttctccagct      4860
     ggaatcgatt agttagagtc atcgcacttg tacgcagatt cccaatcaac tgcaaactca      4920
     aaattcaaaa gaaacttgtc attggtggtc cgatctccaa ccgagaaatg acactttccg      4980
     aagcatgcat ctatcgccaa acacagctgg aaagttattc ggacgaaatc atccttctcc      5040
     aaaaagcgca ggacaacacg aagttacaca gtacgcctct gcccaaaaca agtccgctgt      5100
     accaaaaatc gccttggttg gaccagtttg gggtgctcag aatgcgaggt cgcatcgcta      5160
     actgtgacta cgcgaccgat gaggctaaga acccgattat actaccccgt gaccatccca      5220
     ctactaagtt aataattgca cattatcatc aaaaatacaa ccaccagaat cacgaaactg      5280
     taatcaacga gattcgtcaa aaatacagtg tctcgaaact tcgcatggcc tataacaaag      5340
     ttcgaaacga ttgtcaacgt tgcaagaacg accgggtaat cccacgagta ccgattatgg      5400
     ctgacttacc agtggcccgc ctcgatgcat ttactcgtcc gttcacgcat gtcggggtag      5460
     atttcttcgg gccctatgaa atcgtaatcg gccgccgaac agaaaagcgt tggggtatgc      5520
     tagccacctg tatgacgact cgggcaatcc atattgaaat cgcacattcc ctcagtactg      5580
     gatcgtgcgt catggcgttg cgtaatttca tctcgcgaag aggaaagcct aggacgatct      5640
     acagtgaccg aggtacgaat ttcatagggg caaatcgagt gatcaaagaa gcgcaacaat      5700
     tagtcgacca agaagcattg atggacgagt tcatagactc agaaaccagc tgggaatttt      5760
     taccctcctc ttcaccgcat atgggtggta gttgggaacg attgataggc agcgtgaaga      5820
     aaaacttgat ggccgttctt ctgatcagaa agctgacgga cgaagttctg cgtaacttgt      5880
     taaccgaaat agagaacacc gttaactcac gacctctgac acatgtccct gtagacgatg      5940
     actcagctcc tgcattgaca ctcaaccact tcttgctagg gtcatctaat ggggtgaaac      6000
     cactctgtac tattgacgac agcggcgatg ttctacggca atgttggcga ctgtcacaag      6060
     tacaagccaa ccgattctgg aaaaggtgga ttagcgatta cctacccgaa ataactcgcc      6120
     gcactaagtg gtttagcgac acgaagccag tagaggacaa cgatgtggta gtgattgtag      6180
     atcctagact gcctcggaat tgttggccaa aaggccgaat catctgtaca caccctggac      6240
     gagatggtca accgagatct gcgacggtga aaacagcaac cggcgtgtat gaacgtccgg      6300
     tagcaaaatt ggccgtgcta gatgtacggc gcgttgagga gtaagctgtc ctggtatcca      6360
     gcgtacctgg ggggac                                                      6376
//
ID   BEL-212C_AA-LTR repbase;    DNA;    INV; 833 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 24.01, Created)
DT   20-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212C_AA-I;
KW   BEL-212C_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-833
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-833
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 73-73 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 833 BP; 275 A; 153 C; 157 G; 248 T; 0 other;
     tgttggcgaa tgcacgccag cgcgcctcta cgatgtcgtt gtctatagac gaccgataaa        60
     cgcacccctc atcgctgggt tcagctagag tcggaatgac agctccctac actgtcatag       120
     tggtgagttc atgtagggaa cgatagatag gagacaaatg tcgtgagaat tattatacgt       180
     tgtggatcag acaaatttat taagtatatt attattaatt tggattttgc aatcgattat       240
     cattatcgtg aattgaattt aattgaattt attattacaa tcgagaggta gtattatgaa       300
     gtgtccataa ggtgtaattc gcattgatat gatgtatgat ttagcaggaa tctcacagtt       360
     actcgttaac atacgcttaa cctaaagttg gcaaatctta caagctagtg tggtaaaata       420
     attcttaact aaaacacatg caactactta aacctaactt aatattacag tacggattag       480
     tagtacgact tgagatacga tcttgaatac gatttgcaat aagccgcgca gtattgcgat       540
     ataaccgtga ttatcaacta cggccaatat tagactggtt caaagacgag actgagactt       600
     gactagatga cttgaagacg ggactaaacg taagttagaa caaaccataa ttgactccat       660
     gactactagt actttaagta ataacagatt gttcaaacaa acctttacaa atgaattcgc       720
     acacattaca ggaaaataat aatccttcca tcagagtaaa tcccattcga cggtcgtttt       780
     attccgggat tattatttcg gaaaacattc ccccctgttg gcaatttcca aca              833
//
ID   BEL-212_AA-I repbase;    DNA;    INV; 6370 BP.
XX
AC   AAGE02025927;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212_AA_;
KW   BEL-212_AA-LTR; BEL-212_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6370
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025927; Positions   28137   34506.
XX
CC   Positions [5422-5982] - Integrase core
CC   'ACGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..3685
FT                 /product="BEL-212_AA-I_2p"
FT                 /translation="MVQCDVCSKWHHFQCVGVTQQIEHFPWSCTKCESAKG
FT                 IQEYSSSAALPQGNGGPSRQSSKSHLNRLSVPVQTQHPHQLQQQSQPTPPQ
FT                 QQSDITASQLSLSLAANGSNQQPKGANQGPFVTSLQWVVSPSRDGSKAASV
FT                 SSSHSSQAIARLKLQMLEEMRDVERREADRQCAIAAEEAKREKAFLEQKYQ
FT                 LLEQAMSENGSSKNGSMSRTQNWITATNAHHDGLIASQAEEAIDPNMHVGK
FT                 MQLWNSTFARIGSIRSSLPEPSPPEPFPAPESMLSCPINPPTLTAGMQQLA
FT                 LGSTHQTPFSEQPRTFPTYELPRRVSISQLPHSGGQGVTAPTAFKNIEMDP
FT                 SRRVSQNVSVPDYRRFVPPSNRPAVHHQSNPYSSTMRDYRDYNQEEETDAY
FT                 PISRKQLAARQAISKDLPTFSGNPEEWPLFLSTFNSTTALCGFTNEENIVR
FT                 LQRSLKGRAYEAVKSRLLHPSNVSGVISTLKMLFGQPEVIVHSMMSKINSL
FT                 PTLREDKLELIVDFAVSVQNFCATVDACGLEEYFYNMTFLHQLVNKLPPSI
FT                 KLNWAQYRISLPTVNLQSFSNWLYQLAEAASAVTIPNTTFESKPVRSDSRM
FT                 GKKSNSFVNSHSEEAPSTAIDEANSCLVCKGSCRSIPKCERFLEFSRDSRW
FT                 ATVRDLGLCRRCLHQHSGGCQTKPCGRSGCELRHHELLHNEQKRAPLSSNT
FT                 SASDASKRPPHQSLESTPPATNSNEHGCHTHQVTSSHVLFRYLPVVLHGKN
FT                 RSIGTFAFLDDGSELTLLDQDLADELQLKRETTPLCLLWTGGAKRREDDSK
FT                 SVQLEIAAKHNGSKKYAMHGVRTVAELLLPPQTLNFEELFEQYPHLRGLPI
FT                 TSYQDIRPKILIGMKDQYLSLVQKSREGAIHEPIAVKTRLGWTICGGGNLN
FT                 NAANQVHSVFHICACDSSSVENLHRMMKEYFAVDSLEVVQPKKHLSAEEER
FT                 AQTLLETRTALKGNRYETGLLWRYDNVRLPDSFPMALRRLQCLRKRMDKDP
FT                 LLADQLNMKISDFVEKGYARKLTKAELSQRERTWYLPIFPVTNVNKPGKIR
FT                 MVWDAAAEVHGMSLNTSLLKGPDQLCELFTILVQFREGRVALTGDVREMFL
FT                 QVLMHPDDQQCQRFLWYDEDGTLSVYVLQVMTFGACCSPSSAQYVKNLNAE
FT                 RFKGE"
FT   CDS           4801..6336
FT                 /product="BEL-212_AA-I_1p"
FT                 /translation="MSHFIATDPIIRVNDFSSWGRLVRVVGFVHRFSNNWK
FT                 LKHLKKAISTGPLTTQEISSAEVHLLRQTQLEGYPDEVALLQRSQHEPKLT
FT                 NTPLPKTSPLYQKSPWLDRRGVLRMRGRIAHCDYASEDAKHPVILPRDHPT
FT                 TKLIIAHFHQKFHHQNHETVINEIRQKYSIPKLRSAFANVRNNCQRCKNHR
FT                 VVPKVPIMADLPTARLEAFASPFSHVGVDFFGPYEVVIGRRVEKRWGMLVT
FT                 CLTTRAIHIEVAHSLSTDSCVMALRNLISRRGKPRAIYSDRGTNFIGANRE
FT                 LNEAKFAIDQIEIMKEFVDADTTWQFLPPSSPHMGGSWERLIGSVKKNLMA
FT                 ILPCRKLSDEVLRNLLTEVENTVNSRPLTHVPVDDDSAPALTPNHFLLGSS
FT                 NGVKPLCTIDDRGETLRQCWRLSQVQANRFWKRWITDYLPEITRRTKWFAD
FT                 TKPIEINDVVVILDPKLPRNCWPKGRVICIRPGRDSKLRSGTVRTATGIYE
FT                 RPVAKLAVLDVRRVEE"
XX
SQ   Sequence 6370 BP; 1795 A; 1633 C; 1508 G; 1434 T; 0 other;
     aattattatt ttcgtttata tacggaaacg cggattacat tcagtcatgt cgagtcgaac        60
     cctacggtct ggcaaagtgg ttggtggcac taatagtgca aatggtggtg tgcaagtggt       120
     ggtcacggca gtaccggagg agtcacatcc cggttgaact tgccaagtat gccgtggact       180
     ggattcagtc gagatggtgc aatgtgacgt gtgttccaag tggcatcact tccaatgcgt       240
     aggagtcacg cagcaaatag aacattttcc atggagctgt accaaatgcg aatctgcgaa       300
     aggtatccag gaatacagtt cttctgcagc tcttcctcaa ggaaacggtg gtccttcaag       360
     acagtcatct aaatcacact tgaatcggct ctcagtacca gtacagactc agcatccaca       420
     ccaactccag cagcagtcac agccaacgcc tccgcagcag cagtctgata taacagctag       480
     tcaactatct ctttcgctgg cagctaatgg gtcgaaccaa caacccaaag gagcaaatca       540
     aggaccgttc gtcacctcgc ttcaatgggt cgtgtcgcct tctcgagacg gatctaaagc       600
     tgcatcagtg tcatcgagtc actcttcgca agctatcgct aggctcaaac ttcaaatgct       660
     agaagagatg agggacgtcg agcggcgtga agcagatcgg cagtgtgcaa tcgcagcgga       720
     ggaagcaaaa agagagaagg cattcttgga gcagaagtat cagctgttgg agcaagccat       780
     gagcgaaaat ggctcgtcaa agaacggttc catgtccagg acgcaaaact ggatcacagc       840
     aacaaatgcg caccacgatg ggctgatagc atcccaagcc gaggaagcaa tcgatccaaa       900
     tatgcacgtt ggcaagatgc agctttggaa ttcaacattt gcgcggattg gtagcattcg       960
     gtcgtcactc ccagaaccaa gtcctcctga accattcccc gcccctgagt ccatgctgag      1020
     ctgccctata aatccaccga cactgactgc tggaatgcag cagttagctc tcggctcaac      1080
     acatcaaact ccgttttcgg aacagcctcg gacgttccca acatacgagc ttccacgacg      1140
     agtttcgata tcgcagttac cgcattctgg tggccaagga gtaactgcac cgactgcttt      1200
     caaaaacatc gagatggacc catcccgtcg ggtctcacaa aacgtgtcgg taccagacta      1260
     tcgacggttc gtaccacctt cgaatcgacc agcggttcat caccaaagca atccctattc      1320
     atcaaccatg cgagactatc gagactacaa ccaagaggaa gaaaccgatg catacccgat      1380
     ttctcggaaa cagttagctg ctcgacaagc catttcgaag gaccttccaa cgttttctgg      1440
     aaacccagaa gagtggcctc tgttcttgtc aaccttcaac agtaccaccg ctctatgtgg      1500
     attcaccaac gaagaaaaca tcgtccgttt gcagcgaagc ttgaaaggtc gagcgtatga      1560
     agcagtaaaa agccgactgc tacacccttc gaatgtcagc ggggtcatat cgacgctcaa      1620
     gatgcttttt gggcaaccgg aagttatcgt ccactcgatg atgtcgaaga tcaactcact      1680
     cccaacattg agagaggaca aattagaatt gatcgtggat tttgctgtaa gcgttcaaaa      1740
     cttctgcgcg acagtggacg cgtgtggatt agaagaatac ttctataaca tgaccttcct      1800
     tcaccagctc gtcaacaagc ttccaccatc gatcaagttg aattgggccc agtatcggat      1860
     atcactaccg acggtcaatt tacagtcttt cagcaactgg ctctaccaac tagcagaagc      1920
     tgcaagtgcc gtaactattc caaacaccac tttcgagtcc aaacccgtac gaagcgactc      1980
     acgtatgggc aagaagagca actcgttcgt taactctcac tccgaagaag ccccttccac      2040
     cgctatagat gaagctaata gctgtcttgt atgcaaaggt agctgtaggt ctattcccaa      2100
     atgcgaacgt ttcctggagt tttctcgtga ttcccgctgg gcaactgttc gagatctagg      2160
     cctctgccgc cggtgtctac atcaacacag tggcggatgt cagacgaaac cttgtggaag      2220
     gagtggatgc gagctaaggc atcacgaatt gttgcacaac gagcagaaga gagcaccact      2280
     gtcgtcgaat acttccgcaa gcgacgcaag caaacgacca ccacatcaaa gtctagaatc      2340
     aacaccacca gcgacaaatt caaacgagca cggatgtcat acccaccagg ttacctctag      2400
     tcatgtgctg tttcgctacc ttcccgtagt acttcatgga aagaatcgct cgattggaac      2460
     atttgcattt ctggacgacg ggtcggaact taccctgctt gaccaagatc ttgcagatga      2520
     gctgcaattg aagagagaga caacgcctct atgcctgctc tggactggag gagcgaagcg      2580
     tcgagaggat gactcaaaga gtgttcagct tgagatcgcc gcgaaacaca acggatccaa      2640
     gaagtacgcc atgcatggag tacgtacagt ggcagaactt cttctaccac cgcaaacgct      2700
     caacttcgaa gagctgtttg aacagtatcc acacctcaga ggcctgccaa tcacttccta      2760
     tcaagatatt cgaccgaaaa tcctcatcgg aatgaaggac cagtacctca gccttgttca      2820
     aaaaagccgc gagggagcta ttcacgagcc gatcgccgta aaaactcggc taggatggac      2880
     aatttgcggg ggaggcaatc ttaacaatgc tgccaaccag gttcattcag ttttccacat      2940
     atgtgcctgc gactcgtctt cggtcgagaa cttacataga atgatgaagg agtatttcgc      3000
     agtggatagc ctagaagttg ttcaaccgaa aaaacatctc tcggcagaag aagagcgagc      3060
     gcagactcta ctcgagactc gcactgcgtt aaaaggaaac cgatatgaaa caggcttatt      3120
     gtggcgatac gacaatgttc gactgccgga cagttttccg atggccctcc gacgactgca      3180
     atgcctcaga aagcggatgg ataaagatcc tctgttagcc gatcaactca acatgaaaat      3240
     cagcgatttc gtcgaaaagg gctatgccag aaagctcaca aaagcagagc tttcccaaag      3300
     ggaacggacg tggtaccttc ctatatttcc cgtaacgaac gtcaataaac ctggaaagat      3360
     tcgaatggtg tgggacgcgg cagcagaagt ccacggtatg tcactgaata catcgctgct      3420
     caagggaccc gatcaactct gcgaactgtt cacgatactc gtccaattcc gggaaggacg      3480
     tgttgctcta actggagacg tgcgtgaaat gttcctgcaa gtgcttatgc atccagatga      3540
     ccagcagtgc cagcggtttc tctggtatga cgaagatgga actctctccg tctacgttct      3600
     ccaagtgatg acgttcggag cgtgctgttc ccctagtagt gctcaatatg tgaagaactt      3660
     gaacgccgaa cgtttcaagg gtgagtaacc agcggccgtt gaggtcatcc agaagcgtca      3720
     ctacgtcgat gatatgctgg tgagtgtgac gacagaagag gaagcgatta aactcgcaca      3780
     gcaagtaaag aagatacatg cagaaggagg ctttgaaatc cgtaattggc tcagcaactc      3840
     caagcgtgtc gtcgatgccc tagaggagaa ccacacagaa gaaagaagcc tagatttgtc      3900
     atcggagcta gccacggaga aggtactcgg tatgtggtgg tgtaccgact cggacatctt      3960
     tacctacaga gtcgggtggg atcgttacgg tcgagcgtta ttagaaggta aacaccgtcc      4020
     aacaaaacga cagatgctgc gggtactcat gtcagtattc gatccgcttg ggctaatagc      4080
     ccaggttctt atgtacctga aaattttgct acaagatttc tggcgctctg gcatcgggtg      4140
     ggatgatcaa gttgatgata ccatcttcga acattggcaa acatggttgc aagtgctccc      4200
     acaaatcgag cagatcagca ttccacggtg ctacttcagt actcgaagct tcgataccga      4260
     aagggtgcaa ctccatacct ttgtcgatgc cagtgaaaac ggttttgcag caacttgcta      4320
     cctccgattc gaccatgacg atgacgtaga gtgcaatata gttgctgcca aaacccgagt      4380
     tgcgccgttg aagttccttt ctatacctcg actggagctc caagctgcct tgatcggtgc      4440
     ccgattggct cgaacactaa ccgaagcact cacgattcag atctcgcgtc aagttttctg      4500
     gtccgactca caagatgtcc tgtgctggat gtgcaagatg gcgtaccgat aaattcggat      4560
     tttgctgccg ttcaaacaaa atacgtttgc gcacttccac ttgattggac gccatttcag      4620
     tgaatgttac gataatgtaa acatgttgta ccacgaaata aagtggagag ttcagctgtc      4680
     atataagtga aacgtttcag caatccgtga aataattcaa aacctacact gaaaaaaaaa      4740
     agtgtccgaa atttatcgtg gacaggcttt accaccgacc tcgaactccg tcccagtgca      4800
     atgtcgcatt tcatcgcaac tgatcccata atacgggtca acgatttctc cagttggggt      4860
     cgattagtta gagtcgttgg atttgtacac cgtttctcta acaactggaa actaaagcac      4920
     ctgaagaaag cgatctcgac cggtcctcta actactcaag aaataagttc cgctgaagta      4980
     catctacttc gtcagacgca actggagggt tatcccgatg aagttgctct tcttcaacgg      5040
     tcacaacacg agccaaaatt aaccaacaca cctttgccga aaacaagccc gctgtaccaa      5100
     aaatcacctt ggctagatcg gagaggagtt ttacggatga gaggccgtat cgcccactgc      5160
     gattatgcaa gcgaagatgc caaacaccca gttatccttc cccgtgacca tcccaccact      5220
     aagctgatca ttgcacattt ccaccaaaaa ttccaccacc agaaccatga gaccgtaatc      5280
     aacgaaatcc gacaaaaata cagcatcccg aagcttcgtt cagcctttgc caatgtccga      5340
     aacaactgcc aacgctgcaa aaaccatcgg gttgtcccaa aagtaccgat catggcagat      5400
     ttaccgacag cccggctcga agccttcgca agtccatttt cccacgtcgg cgtcgatttc      5460
     tttggaccat acgaagtcgt catcggccgc cgagtagaaa agcgttgggg tatgctagtc      5520
     acatgtctca cgactcgggc aattcacata gaagtcgctc attctctcag cacggattcg      5580
     tgcgtcatgg cgttgcggaa ccttatctca cggagaggaa aaccgagagc aatctacagt      5640
     gaccgaggga cgaattttat tggagcgaat cgagagttga atgaagcgaa gttcgctatc      5700
     gatcaaatag agatcatgaa ggagttcgtt gacgcagata ccacatggca gtttcttccc      5760
     ccctcttcac cacacatggg tggcagttgg gaacggctaa tcggcagtgt aaaaaagaat      5820
     ttaatggcaa tcctaccatg cagaaaactg tcagacgaag ttctgcgcaa tctcttaacc      5880
     gaagtagaga atactgtcaa ctcgcgacca ttgacccacg ttcctgtgga cgacgactca      5940
     gctccagctc taacacccaa ccatttcttg cttgggtcgt ctaatggagt taaaccactc      6000
     tgcaccatag atgaccgtgg ggagacgctg cgccaatgct ggcgcttatc ccaagtacag      6060
     gctaaccgat tctggaagcg gtggatcacc gattatctac cggaaataac ccgccgcacc      6120
     aaatggttcg ccgataccaa accaatagag atcaacgacg tggtggtgat tttagaccca      6180
     aaactacctc ggaactgttg gccaaagggc agagtcattt gtatccgccc cggacgagat      6240
     agtaaactac ggtctggtac agtaagaacg gcaaccggaa tctacgaacg accggtagcc      6300
     aaactggctg tactagatgt acggcgcgtt gaagagtaag ctggccaacc ggtcagcata      6360
     cctgggggac                                                             6370
//
ID   BEL-212_AA-LTR repbase;    DNA;    INV; 809 BP.
XX
AC   AAGE02025927;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-212_AA_;
KW   BEL-212_AA-I; BEL-212_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-809
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025927; Positions   27328   28136.
XX
SQ   Sequence 809 BP; 273 A; 141 C; 152 G; 243 T; 0 other;
     tgttggcgaa cctacgccag cgcgcctcta tgatttaatt ggctctatac gaccgacggt        60
     tgtacccccc ggcattaggt acgaagagaa gccaaatcgg cttcgatgga tgagatgaca       120
     gcttcacaca caattatagc ggtgagtctg tatcgttcat tataaagatg ataacgttga       180
     taagagtgaa atagtaaaca tcgtgcgata aaattgaact tacaaatttg cctattagtg       240
     cagtaaatgt atagtaggtt tagctcaata agtgaattta tctgtattta taaggtagta       300
     taacgttgaa ttgtgttatc gatattcgct aatcttttaa tgaccaatca ggaatctatt       360
     ggccaaattc gttacacacc taacctaaag tgatgaattg aatctacgaa ttagtttggt       420
     aaaataacat agaatcatga aatcatgcaa atacttaaaa actaccttaa aattatagta       480
     cggattaaaa gtacggctgg aacaactgtt cccgagtcat tcggtgtttc gaggacaggc       540
     agttaaacat tgacctaaca ttagactggt tcatgatcaa gacatagact ggactagaca       600
     caggaacaag actaaacgta agttgaacac ataagacttt atgattgcct ataaatttaa       660
     aagaattatt cagttttgct gtgaaattat aacattactc atgcctttca ggaaaataat       720
     aatcccccta tcagtaaatc ccagaaacgg tcgtttaatt tcggggttat tatttcggaa       780
     atatcttctt ctgttggcga tttccaaca                                         809
//
ID   BEL-213_AA-I repbase;    DNA;    INV; 6698 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-213_AA_;
KW   BEL-213_AA-LTR; BEL-213_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6698
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 883-883 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5644-6222] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1297..6609
FT                 /product="BEL-213_AA-I_1p"
FT                 /translation="MPPITRKGSTLRQLRTQLEEVTASFDDIAVFIQRFDE
FT                 HTTASQVEVRLEKIDDLWEKFSETLVELKSHEDFEDEEKYYQKLRMNISEQ
FT                 YYDGKSFLKDKAKSLHEPTDLEQSVREPSMLGVLDHVRLPQIKLQTFCGEI
FT                 DDWLSFRDLFTSLIHWRTDLPEVEKFHYLKGCLQGEPKSLIDSSKITKANY
FT                 QIAWDTLCKRYNNNKLLKKKQVQSLFKLPTLTKESVAELRTLVEGFDRIVQ
FT                 TLDQIVEPADYKNLLLVNLLTMRLDPYTRRAWEECAASKDQDTLEDITEFL
FT                 RKRIQVLESLPPRPADPKFHQQPPSSKPKPPAVKTSYNSVQSIPGRCVACK
FT                 DSHLLYQCSAFQQLPVADRDSLLKSNGLCRNCFRFGHQARDCQSKFSCRIC
FT                 RKRHHTLLCFRAEKDNATTVVSVAGGNHPSTSQDSHGSMGPNSTHVANMAA
FT                 TDVSACNVAQKVSSTVLLATAVVVVEDDIGVRFNARALLDSGSESNFVSER
FT                 LTQRMKVSRNKVDVSVLGIGQGTTKVKHSVQMVLRSRVSDFSREMAFLVLP
FT                 KVTTNLPTTSINSEGWKIPDGIQLADPAFFQSKEVDIVLGIEAFFEFFETG
FT                 RRIPIGNHLPTLTESVFGWVVCGGCSTSKVSQQINCNFSATTELERLMERF
FT                 WSCEEVEFSNSYSPEEKLCEDIFQRGVQRGSDGRYTVPLPKNEDIIQNLGE
FT                 SRNIAYRRLLGTERRLARDDKLREQYVAFMNEYLTLGHMRKVGSNEEETVK
FT                 RCFLPHHPVVKEASTTTKVRVVFDASCRTSTGVSLNDALLVGPVVQEDLRS
FT                 IILRSRTKQILLVSDVEKMFRQILTTPEDRHLQSILYRFSPNEEVTVFELN
FT                 TVTYGTKPAPFLATRTLQQLAADEELNFPLASRAIREDVYMDDVITGTDDV
FT                 DTAICLRNQLSAMMERGGFMLRKWSCNIPAVLRGLPAENLAIRDNTGVNLD
FT                 PDQAVKTLGLTWMPMTDTLRFQFDIPPPEQDVPFTKRRILSLIATLFDPLG
FT                 LIGATTVSAKIFMQQLWTLQDENGNRLEWDSPVPQMVGEAWRKFHEKLPLL
FT                 NEVRVNRCVIIPNAVSVELHCFSDASERAYGGCIYVRSQDLEGTVLVRLLS
FT                 SRSKVAPLQNQSIPRLELCGALLVSQLFEKVRNSTRLSVETHFWTDSTCVI
FT                 RWIAAPPNTWTTFVANRVAKIQAITNGWNWRHVAGVDNPADLVSRGISAED
FT                 IVHNELWWGGPHWLKQGQEAWPNGTTEDRIVGEEERRRTTIACTMSPVTEF
FT                 NEFYLSKFGSFTELIRRTAYWLRLMKYLQNPKENRFEGVFLTTAELRTSQH
FT                 VIIRNVQREAFAQERKALMDGQAVSSKSPLRWFNPYIDEEGLIRVGGRLKN
FT                 SSELEGTKHPAVIPARHRLTKMIMKHFHETLLHAGPQLLLGVVRLQFWPLG
FT                 GRNVARQIVHQCMRCYRAKPTTVQQFMGELPSSRVTISRPFTKTGVDYFGP
FT                 VYIRLAPRRTAVKAYVAVFVCFCTKAVHLELVTDLSTECFLLALRRFVARR
FT                 GKPSDMYSDNGTNFVGAKNKLTELLSLLKNREHHERITSELGQNAIQWHFN
FT                 PPSAPHFGGLWEAAVRSSKNHLLKVIGESVVSAEDFSTLLVQVEACLNSRP
FT                 MTPMSDDPDDLEPLTPAHFLIGSSLQALPDIEVEAFPSNRLNRFQLIQQKL
FT                 QLFWSRWRREYLNLLQARTKRWKPAIVVEKGRLVVIKDDNVPPIRWKMGRI
FT                 VAVHPGDDNVVRVVTLKTATGELKRPVEKICILPMPNVDELDESDANSSRN
FT                 "
XX
SQ   Sequence 6698 BP; 1845 A; 1577 C; 1586 G; 1687 T; 3 other;
     tttggtcctt cgaaccggat ttgcttgccc agtccggttg gaagtaggat tatcgccttg        60
     ttgaagccac tgaagccatt tcgtcgccat tgaaaccgcg caagggcgcc atcgagaagg       120
     gaacacaatt gctctattgg acttcgacat tgtgaccawt tgctttgttg gagacgcgcc       180
     attccgaacc attcaatgaa ggatcctcgc caatattcgc catcacgata ggatccaata       240
     ctcaagccac agtgaaggcg caccatattg agacgattgg agaatcagtg catgcaacga       300
     ttacacccgg attacatcgc tcgataccag gactgcccag gaataccgaa ccggccggaa       360
     tcactgcttt gtcaggtaat tatacataag ttcggtatat gtctggccga agcaaccttg       420
     catgacacta acgccatcat ttcgacacac ttcatttgca tgcgctgagg aaaccggcaa       480
     tccgctggtg ttgatcattc atccgaggag ctggaaggtt atcatcgagc atctatttca       540
     accgcttgaa tttctgtgga cgaaaaggaa cgacgaacga ttgcggcgga tagcagtaga       600
     agagggagcg tcgaaatact ccctcgtagg tgagtgcact ttattgtata tgtaccgccg       660
     aagcaaggcg tgcagaaata cactctggta atttgaattc ctgtatcctc ttcatttatt       720
     actgcgcaat ccctgcaaga gaactgctcg ttagagcaag tctgctggaa ttttcccaaa       780
     ttgcatcctc ctcttttgga cacggttggt ggagttgtta gtcctccagg ttagttttac       840
     ggtatatgtc ctaccgaagc aagacctacg gatattacac acttcaattt cctcttcaat       900
     tgctactgta cattacccac atttggagcc caagtttgtg acgatcaatt attggaaccc       960
     atcgctgatt ggcatttcgt gttttggaat tagtaccgct gttggtacct ccaggtaggt      1020
     tgccgcagta tatgccaagc cgaagccaag gttttgtgga tattacaccc caacttctcc      1080
     tcttctctcg caaaatctga aactgagccg ccgctgatga tagtttgatg tgacgtcatt      1140
     gtgctttcga gacaattcgc tgaattttgg aacattttta gaacagccac ctgttctgtc      1200
     aggtcagtga aataggacag tatatgtccg ccgaagcaaa actacacgcg gcatactaca      1260
     tctctgtttt tccctaccgc caatcgacat cacatcatgc cacccattac cagaaaagga      1320
     tccaccctga ggcagttgag gactcagctg gaggaagtta cggcttcctt tgacgacatc      1380
     gcggttttta tccagaggtt cgacgagcat actaccgctt ctcaagtcga agttcgtttg      1440
     gagaaaattg atgatttgtg ggagaaattc agtgagacat tagttgaact gaaatctcat      1500
     gaggattttg aagatgagga gaagtattac cagaaattac gaatgaatat cagcgaacag      1560
     tattatgatg ggaagtcctt tcttaaggac aaggccaaat cactccatga gccaacggat      1620
     ttggagcagt cagtccgtga accttcaatg ttgggtgttc tcgaccatgt tcggttaccg      1680
     caaatcaaac tgcaaacgtt ttgtggtgaa atcgatgact ggttgagctt ccgggacttg      1740
     ttcacctctt tgattcattg gagaaccgac ttgccagagg tggagaagtt ccattatcta      1800
     aagggatgtc ttcaaggcga gccgaaaagt ctgatcgact cgtcgaagat cacgaaggcm      1860
     aattaccaaa tcgcttggga cactctgtgc aagcggtata acaacaataa attgctgaag      1920
     aagaagcagg ttcagtcctt attcaagctt ccgaccctaa ccaaggaatc cgtggccgaa      1980
     ttacgaactt tagtggaagg tttcgatcga atcgtccaaa cgctcgatca aatcgtggaa      2040
     ccagcggatt ataaaaacct tttgctggta aatctcctta cwatgcgact agatccatac      2100
     acccgtcgtg cttgggaaga atgtgcagct tccaaggacc aggatactct ggaggatatt      2160
     accgaattcc ttcgaaagcg aattcaagtt ctggaatccc ttccgccaag gccggcggac      2220
     ccaaagtttc accaacaacc accctcgtca aaacccaaac cgccagcagt gaaaaccagc      2280
     tataattcgg tccaatcaat cccaggaaga tgcgtggctt gcaaggatag ccaccttcta      2340
     taccaatgtt ccgcattcca acaattaccc gtggcggaca gagattcact gctgaaatca      2400
     aatggacttt gccgaaattg ctttcgcttt ggacatcagg caagagattg tcaatccaag      2460
     ttctcttgtc ggatttgcag aaagcgtcac cacactctgt tatgcttcag agcggagaag      2520
     gacaatgcta caacggtagt atcggttgct gggggcaacc acccttcaac ctcccaagat      2580
     tcccatggct ctatgggtcc caattctacc catgtggcca atatggcggc cacggacgtt      2640
     tcggcatgca atgttgctca aaaggtttca tcaacggttt tgctagcaac agcggtagtc      2700
     gttgtcgagg atgacatcgg cgtcaggttc aatgctcgag ccctattgga ctccgggtcg      2760
     gagagcaact ttgtgtcgga acgattaacc caacggatga aagtctccag gaataaggtc      2820
     gacgtttcgg ttctcggcat agggcaggga accaccaagg tgaaacattc ggtgcaaatg      2880
     gttctacggt cgcgagtttc ggatttctcg cgagaaatgg cttttctggt attacccaag      2940
     gtaactacca atctacccac aacctcaatc aattcggaag ggtggaaaat accagacgga      3000
     atccaattgg cggacccagc ctttttccaa tccaaggaag tcgacattgt tcttggcatc      3060
     gaggctttct ttgagttttt cgagacagga agaagaattc caatcggaaa tcacctacca      3120
     accctcacgg aatcggtatt cggttgggta gtctgcggtg gctgctcaac ttcgaaggta      3180
     tcccaacaaa tcaactgtaa tttctcagca accacggaac tggaaaggtt gatggaaagg      3240
     ttctggtcat gcgaagaggt ggaattctca aattcctatt ccccggaaga gaaattgtgt      3300
     gaagatatat tccaacgtgg agttcagcga ggttcagatg gtcggtacac tgttccatta      3360
     cccaaaaatg aagatattat ccaaaatctg ggcgaatcac ggaatatcgc ctatcgacgt      3420
     cttctcggga ccgagagaag attggcaagg gacgataaac tacgggaaca gtacgtcgca      3480
     ttcatgaacg agtacctaac attgggacac atgcggaagg tcggaagcaa tgaagaggaa      3540
     accgtgaaac ggtgttttct accccatcac ccggtggtta aggaagctag taccaccact      3600
     aaggtcagag tagtcttcga cgcttcctgc agaacatcaa ctggagtatc cctcaacgat      3660
     gcactactgg tagggccagt tgtgcaggaa gatttgcggt ccatcattct ccgaagtcgg      3720
     acaaaacaga ttctccttgt atcagacgtg gagaaaatgt ttcgacagat cctaactaca      3780
     ccagaggacc gacacttgca gtcaatacta tatcgttttt caccgaacga ggaagttacg      3840
     gtgtttgagt tgaataccgt gacttacgga accaagcccg caccctttct ggcaacccgg      3900
     actcttcaac agttggcagc tgacgaagag ctcaattttc ctcttgcgtc aagagcaatt      3960
     cgtgaagacg tctatatgga tgacgttatc accggcacgg acgacgttga tactgccatt      4020
     tgtctaagaa accaactttc ggcaatgatg gaacgtggtg gctttatgtt aagaaagtgg      4080
     tcctgtaaca ttccagcagt tttgcgtgga ttacccgctg aaaacctagc gattcgggac      4140
     aataccggag tcaacttgga tcccgatcaa gccgtcaaaa ccttagggct gacttggatg      4200
     cccatgaccg acaccctccg atttcagttt gacattcctc caccagaaca ggatgttcca      4260
     ttcactaaac gtcgtatttt atcactcatc gctacattgt tcgatcccct tggattaatt      4320
     ggagccacaa ctgtgtctgc caagattttc atgcagcaac tctggacgct gcaagacgaa      4380
     aacggcaacc gattggagtg ggatagcccg gtacctcaaa tggtgggtga ggcttggcgg      4440
     aaattccacg agaaacttcc acttttgaat gaagtccgcg tcaatcgttg tgttatcatt      4500
     cccaatgctg tttcggtgga gttacactgc ttctcggatg catcagaaag ggcttatggt      4560
     ggctgcatct acgtgagaag tcaggatttg gaaggaacag tcttggtaag actattgtcg      4620
     tccagatcca aggtagcccc tctccaaaat cagtcaatcc cacgacttga gctttgcggt      4680
     gccctcctgg tgtcacaact atttgaaaag gtccggaatt ctacgagatt gtcagttgaa      4740
     acgcactttt ggaccgattc aacttgtgta atacgatgga tagccgcacc tcccaatact      4800
     tggactacat ttgtggccaa tagagtggca aagatccaag caataacaaa tggatggaat      4860
     tggagacacg tagctggagt agacaatcca gcggaccttg tatctcgggg aatatctgca      4920
     gaggatattg tccataatga actctggtgg ggaggcccac attggctgaa gcagggacaa      4980
     gaagcgtggc ccaacggaac cacagaagat cgcatagtag gagaggaaga gaggcgtcgt      5040
     acgacgattg cctgtacgat gtcacccgtt accgaattca acgagttcta cctcagtaaa      5100
     tttggatcgt ttacggagct tatccgaaga acagcatact ggctgcgact catgaaatat      5160
     cttcagaatc cgaaggaaaa tcgttttgaa ggcgttttcc tgactacagc agagttaagg      5220
     acatctcagc acgtaataat ccggaacgtc caacgagaag ctttcgccca ggagagaaaa      5280
     gcgttaatgg atggacaagc agtttcgagc aagtcaccat tgagatggtt caacccgtac      5340
     atcgatgagg aagggcttat cagagtgggc ggaagattga agaattcatc cgaacttgaa      5400
     ggcaccaaac atcctgcggt aatacccgct cgtcatcgtt taaccaaaat gattatgaag      5460
     catttccacg agacgcttct acatgctggc ccacaactac tattgggagt agtccgacta      5520
     cagttctggc ctcttggtgg cagaaatgtt gctaggcaaa tagtacatca atgcatgagg      5580
     tgctatcgag caaaaccaac gacagtccag cagtttatgg gtgaactacc gtcctcacga      5640
     gtaaccattt cccgaccatt cactaaaaca ggagtagatt actttggacc tgtctacatc      5700
     cgactggctc cgaggcgcac cgccgtgaag gcttatgtag cggtttttgt ttgtttctgt      5760
     accaaggcgg tacacttgga gcttgtcacc gacctttcga ctgagtgttt cctgctagcc      5820
     ctacgacgat ttgtggcccg ccgtggaaag ccgtccgata tgtattccga taatggcacg      5880
     aatttcgtcg gcgctaaaaa caaattaact gaacttctca gcttgctcaa aaatcgggaa      5940
     caccatgaaa gaatcacatc tgaacttgga cagaacgcta ttcaatggca tttcaatcct      6000
     cccagtgcac cacacttcgg aggactctgg gaggcagcag tacgatcgtc caagaatcat      6060
     ttattgaagg tgattggaga gtcagtagtt tcagcggagg atttctctac acttcttgtg      6120
     caggtcgaag cttgtctgaa ttcccgccct atgacaccaa tgtccgatga tccagacgac      6180
     ttggaaccat taactccagc gcatttccta attggctcat cattacaggc tctgccagat      6240
     attgaagtag aagctttccc atcaaatcga ttaaatcggt tccagttgat tcaacagaag      6300
     ttacagctat tttggagtcg ttggcgccga gaatacctca atctcctgca ggcgagaaca      6360
     aaacgctgga agcctgcgat agtcgtagaa aagggtagac ttgttgtgat caaagatgac      6420
     aacgttcctc ccatcagatg gaagatgggc agaatagttg ctgtacaccc tggtgacgac      6480
     aatgttgtaa gagtcgtgac cttaaaaaca gccacaggtg aactgaaacg tccagtagag      6540
     aagatatgta ttttgccaat gccaaatgtt gatgaactag atgaatctga tgcaaattcg      6600
     tcacgaaact agctccaaat cctttccaac tcccatcccg tagaagaggt tttcttgttt      6660
     tctttcagaa attcagcaaa tttctgggtg ggtgagaa                              6698
//
ID   BEL-213_AA-LTR repbase;    DNA;    INV; 706 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-213_AA_;
KW   BEL-213_AA-I; BEL-213_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-706
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 884-884 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 706 BP; 190 A; 168 C; 169 G; 174 T; 5 other;
     tgtacgatag ctctacccag aataacaaca gattatttgc tgttcaacaa attgcgacga        60
     tagagatgac caaaacaaac ccaccgataa ttggaatagc cggctcaata cacttaccgt       120
     ccggcgtgcg gacgatggtc gcctagtttg acccacattt catcccagca acgatagcag       180
     ctgttcgcat gcgtatgggt cacccgatgt ccgagatgtg cgamgtagak ctacctagag       240
     cagcagagtg caggagagta cagagatgtt gctcagatct cctgttctta ggcagattgt       300
     gagtgaccct taggtttatc gatgaccaat ttaaattggg agaagtcagt ctggattgag       360
     cgtcgaacgg gtcggtcgwt gtaccgtgat ttttaatctg ttagatttaa gacgatatgt       420
     gttagtgtta agtaataaat tgtgtgtata aagattgtgt ttccctccaa ccgcgcgtgt       480
     gtttgtgttt ccaagtgaga aggcctacca ascccagaaa tcaccggatc accaggatct       540
     tcaggacact ggaattggta tccaacacgt cctattcgac gatactgtgc caccaagccg       600
     tcagcttcag tcgcccatca cccgcaccat tcccccaggc gatacawcgt gttgaagttg       660
     gtcaccgaga gctatcgacc aaagggtgag gaccaactac gcaaca                      706
//
ID   BEL-214_AA-I repbase;    DNA;    INV; 6109 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-214_AA_;
KW   BEL-214_AA-LTR; BEL-214_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6109
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 885-885 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5144-5704] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..950
FT                 /product="BEL-214_AA-I_2p"
FT                 /translation="MEGHRKPAGYSCQSCTRPDTDDEKWVACDGCSLWEHF
FT                 YCAGVDESVKNQPYICRKCKAKSAVSGTSSSRINKPPPSEGRSLRSSTAKS
FT                 GLKPVNKVTQLASKFSRSVNSTTSSVRAARLQAQMKLVEEEQLLKEQELEA
FT                 QEAMRKKEMEEEERQLEEKKALLQAETKLRQRKLQEEKEYQKKQQMIRKES
FT                 LEKKNTIARQLSECSSRGGSIPDSEQQVARWLQQCSPEQLENEDYISRTGA
FT                 GEASPLIRPNPPFTNKAEHQDSDRQSHVEQQFSRILIDASDNDPPAAIHAC
FT                 VNHDPPQERTATK"
FT   CDS           3632..6109
FT                 /product="BEL-214_AA-I_1p"
FT                 /translation="MLERNSATESVLGMTWNPVDDCFSYSFNLRNDLHSIL
FT                 DETHVPTKREVLKVVMSLFDPLGLVSHFLVHGKVIIQGTWAAGTGWDEPLN
FT                 EELLKKWRQWVSLFPKLNDLKISRCYFSPYPSNIGDIQMHTFVDASDIAYS
FT                 CVIYFRLVHLGHVQVVLVGAKSKVAPLKTLSTPRLELKAAVLGVRYAAAIS
FT                 EYHSIPLTRRFFWSDSTTALAWIRSDHRKFHKFVSVRVGEILTLSEPQEWR
FT                 WVQSKSNVSDEATKWNDGPNLDSHGPWFNGPKFLLLEEASWPEQRVMSTTL
FT                 EEIRRVQIHREHEPAIEYFRFNKWTKLQRTTAYVVRFIDSLRRRNVGQNLQ
FT                 REILTQEELARAEVLLWKMAQMEAFPEEQIVLKKTMGPPNVKHANVSKSSS
FT                 IYKTWPYMDAQGILRMRGRIGAAYYLPFQARYPVILPRQHWITTLIVDWFH
FT                 HRYRHANRETVINELRQRFEVAKLRSLVQRVSKNCVWCRINKAFPKPPVMA
FT                 PLPEERLEPFVRPFTYVGVDYFGPLYVKVGRSQAKRWVALFTCLSIRAVHM
FT                 EIVYSLSTESCVMAIRRFVSRRGSPAVFFSDNGTCFQGASKQLKEEVNTRI
FT                 EAIADTFTDAETKWKFIPPAAPHMGGVWERLVRSVKTALGTALEHPRKPND
FT                 ETLGTIIQEAEALVNSRPLTYIPLESADQESLTPNHFLLGSSSGNKIEPAV
FT                 VTEHATLRSSWKMSQYIVGEFWKRWVKEYLPVITRRCKWFKEAKDLAEGDL
FT                 VLVVNGTERAKWVRGRIEKTFAGCDGRVRQALVRTANGVLRRPAVRLAVLD
FT                 VEERREPKELQEDPGNHLGSRAGV"
XX
SQ   Sequence 6109 BP; 1698 A; 1447 C; 1567 G; 1372 T; 25 other;
     aatcttcaag aattttatct acacggggtt gtggaatgga aggacatcgt aagcctgccg        60
     gttacagttg ccagtcttgt acaaggccag ataccgacga cgaaaagtgg gttgcgtgtg       120
     acggatgtag tctttgggaa catttctatt gcgcaggagt ggacgagtcg gtgaaaaacc       180
     aaccgtatat ttgcaggaag tgcaaggcaa agtcagctgt ctccggaacg tcttcatctc       240
     gtatcaacaa accaccgccg tcagaaggaa gatctttacg atcgtcgacg gccaaatctg       300
     gcctaaagcc ggtaaataag gtaacccaac tggcatctaa gttctcgcga agtgtaaaca       360
     gcacgacttc gagtgtgcgc gctgcacgtc tccaggcaca gatgaagctc gtcgaggagg       420
     agcaattgct gaaggagcag gaattggagg cgcaggaagc aatgaggaag aaagagatgg       480
     aggaagagga acgtcagcta gaggaaaaga aggcgctctt acaagctgag actaaactgc       540
     gacagcgtaa actgcaggag gagaaagaat atcagaagaa gcaacagatg ataaggaagg       600
     aatcgctgga gaagaaaaac accatcgcac ggcagctgag cgagtgcagc agtagaggtg       660
     gatcgattcc ggattctgaa caacaggtag cccgttggct tcaacaatgt tcccccgagc       720
     aactcgaaaa cgaagattat atttcgagaa cgggtgctgg agaagcctcg ccgttgatca       780
     gaccgaaccc accattcacc aacaaagccg aacaccaaga ctcggaccgg caatcgcacg       840
     tggaacagca attttckcga atcttgattg atgcctctga caacgacccg cctgcagcta       900
     ttcacgcatg cgtgaaccat gatccgccac aagaacgaac cgcaaccaag gawccaacga       960
     agattcagct agccaccgat tcgacagaga ttttcgtgca aacttctccg atcacacgat      1020
     gctccctcgt ccgtatgctg atcgacgaat tccagkgaca caaatggagc agccacagaa      1080
     ggcgtacaaa ccatctcaac aggtaccaca ctcgtcgcgt cagccataca tggatccgga      1140
     aacaatgacg ttttctgcgg tacttagtgc gaatcaacta gctgccagac aggtaatggg      1200
     gaaggaattg ccgaatttct ccggtaatcc tgaggagtgg ccgatcttca tttgcagctt      1260
     cgagcaatct acagcggcct gtggctacac cgatactgaa aacctgattc gactacaaag      1320
     atgcttgaaa gggcatgctc tcgaatctgt gcgaagccga cttctccttc cttcgagcgt      1380
     tccacaagtt atcaacacgc ttcgcacact ttacggcaga ccagagcttc tcatacgaac      1440
     actgattgaa aaagttcgcc gcactcctgc ccctagacat gatcgtttgg agactgtggt      1500
     tgaattcggc ttagtcgtgc aaaacctsgt agatcacctg aaggcggcga agcagtacac      1560
     gcacttagcc aatccgattc tgatgcaaga gttggtggaa aaacttccag gwkcagtgaa      1620
     gatggactgg gcagtctata aaagccggca gccctatgca actttascca cttttgggga      1680
     cttcatgacc gggctactag atgcagcaag ccaggtgaca ttcgaactgc cgaaccacat      1740
     tggaagctcc aagttcgggg aacagcgagc aagagaaaga ggtctgcttc cgcmcattcg      1800
     tcgatsscgc ttctgcacgg agggtataaa tkstmaatca actacagaga aagcaggtaa      1860
     gccatgcgca gcgtgcgaac gtcgagaggt catcgmgtta gcggattgcc accagttcaa      1920
     atcactggac gtcgkcgaac gstgggaggt cgtccaccaa aagggactgt gttgtacgtg      1980
     cctgaatggc cacggaaagt ggccgtgtaa gtcctggcaa gggtgtggga ttgaggggtg      2040
     tctccaaaaa caccacacac tccttcactc ctcttccgcg tcgccacctc ggaatgtctc      2100
     cgtcaaccat cccatggaga acaacggaat ckcaccctat gtttcgggtg ctcccagtgg      2160
     tactatatgc gggcatcgca gaaggaagtc gtatttgcgt tcgtcgatga gggatcgtcg      2220
     acaacattct tggaggaaac catcgctgac cgcctgggcg tatctggtca cgtagaaccg      2280
     ctgaccctac agtggacggg taacataaaa cgggaagaac gaaattccca acgaattcag      2340
     ctggatgtca ccggtgagga tggtcgaaca ccgtcataag ctgtgcgagg ttaggacagt      2400
     cagctgtttg gtcttgcctt ctcaaacgat gaattacaac gatctctgca accgctaccc      2460
     acacttgcgg ggactcccac tgagaggtta tgagttgatc cagccaaagc tactaattgg      2520
     tttggataat cttcgccttg ccgtgccgtt aaaggtccgc gaaggtggmc cwagagaccc      2580
     gatagccgct aagtgccgwt tgggttggag tgtctacggg agtttagcgg gaacatctcc      2640
     accgcgagct gtcgtccact ttcatgtggc tggaccagca aatagtgact gtcaattgaa      2700
     cgatcagctc cgagactatt ttgcactgga ggacgccgga ataagggggc taagcgagac      2760
     gctagagtcc gatgaagaga gacgtgcgat tgaaatatta caacgaacca ckcggcgsac      2820
     agggcgtgga tttgaagccg gacttctgtg gagagaagac gatccgaatt tcccagacag      2880
     ctatccaatg gcagttcggc gsttgaagtc tttggagcgt aagttggaga agaacccact      2940
     gctgaagaat cgtgtcctgg agcaaattgc cgagtactta cgaaaaggat acgcccacat      3000
     tgcactgatt cggagctkga aagkgcagac cgcaaacgta cgtggttcct gccgcttgga      3060
     gtggtcgttc attccaagaa acctagcaaa ataagattaa tatgggatgc cgcagccatg      3120
     gtagatggag tctccttcaa ttccaagctt ttgaagggtc ccgatctttt aacaccatta      3180
     ccagcagtgc ttagtggctt tcgtcaattt cccattgcgg tctgcggtga catcaaagag      3240
     atgtttcacc agctctcaat tcgcgaagag gaccgtttag cacaatgttt cctatggcgg      3300
     aacaactcta cggaacctat tcaactctac atcatggacg tagcgacgtt cggcgcgact      3360
     tgttctcccg ctgccgcgca atatgtaaaa aaccttaacg cgcaggagtt ctctgaagtt      3420
     tatccacgtg ccgccaccgc aatagtagaa aaaacattac gtggatgact acttggacag      3480
     cttcgcgacc cttgaagatg ctgcggaagt agtgaaggag gtaactcaag tacactcgct      3540
     gggaggattc gagattcgag gctttcgctc taactcaaca gaacttctcc gggaaatagg      3600
     tcaaccaacc gatgatgagc cgaagaactt gatgctagaa aggaattccg ctactgagtc      3660
     cgtgcttgga atgacctgga atcctgttga tgattgtttc tcctattcct tcaatctgcg      3720
     aaacgatctc cactcaattc tcgacgaaac acatgttcct accaagcgtg aggtcctgaa      3780
     ggtagttatg agcctcttcg atcccctcgg gcttgtctca cactttctag ttcatggaaa      3840
     agtgatcatt caaggaacgt gggcagctgg aacaggatgg gatgagccgc ttaacgaaga      3900
     actcttaaaa aaatggcgcc aatgggtgtc acttttccca aagctcaacg atttgaagat      3960
     ttcgcgatgt tatttttcgc catacccttc caacattggc gatatacaaa tgcacacatt      4020
     tgtagacgcc agtgacatcg cttattcctg tgtgatctac tttcgactag ttcatcttgg      4080
     ccatgtacaa gtggtactgg tgggcgctaa aagcaaggtg gctcccctga agacattgtc      4140
     taccccacga cttgagctga aggccgctgt actaggagta cgatatgctg cggcaattag      4200
     tgagtatcac tcgattcctc taacaagacg gttcttctgg agcgattcca ctactgctct      4260
     agcatggatt cggtctgatc atcgtaagtt tcacaaattc gtgtcggtgc gagttggaga      4320
     aattctaaca ttgagcgaac cacaagaatg gagatgggtg caatctaaat ctaacgtttc      4380
     cgacgaggca actaagtgga atgatggacc gaatcttgat tctcacggtc cctggttcaa      4440
     cggacccaaa tttcttcttc tcgaggaagc gtcatggcca gaacaacgag tcatgagtac      4500
     gacactggaa gaaatccggc gagttcagat tcaccgggaa catgaaccgg cgatagagta      4560
     tttccgtttt aacaagtgga ctaaattaca acgcacaaca gcctatgttg ttcgtttcat      4620
     cgatagcttg cgccgacgta atgttggcca aaacctgcaa cgagaaattc tcacccaaga      4680
     agagttggca cgagctgaag ttctcctttg gaagatggcg caaatggagg cgtttccgga      4740
     ggaacaaatc gtgctgaaga aaacgatggg tcccccaaat gtaaagcatg ctaatgtttc      4800
     caaatctagc tcaatataca aaacctggcc gtacatggat gcacaaggaa tcttgagaat      4860
     gcgaggacgc attggagcgg catattacct gccatttcag gcaaggtatc cagtaattct      4920
     tccaagacaa cattggatta caactttgat tgttgactgg tttcatcacc gctatcgcca      4980
     tgctaaccgt gagaccgtga tcaacgagtt gcgtcaacgt tttgaagttg caaagttgag      5040
     atctcttgtg caaagagtgt cgaagaactg tgtatggtgt cggattaaca aggcctttcc      5100
     aaaacccccg gtaatggccc ctcttcccga ggaaagacta gaaccatttg tgcgcccttt      5160
     cacttacgtc ggcgtggact attttggacc attatacgtg aaagtaggac gatctcaagc      5220
     aaaacgatgg gttgcactgt tcacctgcct atcgatccga gcagttcata tggaaattgt      5280
     gtatagtctg tctacagagt catgcgttat ggctatcaga agatttgtat cacgccgagg      5340
     ttcacctgct gttttcttct cggacaacgg tacctgtttc caaggtgcca gcaagcagct      5400
     gaaggaagaa gttaatacca gaattgaagc aatcgcggac accttcacag atgccgaaac      5460
     taagtggaaa tttatcccac cagccgcccc acatatgggt ggcgtatggg aacgtttagt      5520
     ccggtcggtg aaaacagcgc taggaacagc attggaacat cctcgaaagc ctaacgacga      5580
     aacgctgggg acaattattc aagaggcaga agcactggta aactccagac cactcacata      5640
     catcccgtta gaatcggcag accaagagtc gttgacacca aaccatttcc ttctgggtag      5700
     ttcaagtgga aataagatag aaccagctgt cgtaacagaa cacgctacac tccgtagcag      5760
     ttggaagatg tcgcaataca tagtaggaga gttctggaag aggtgggtaa aggagtactt      5820
     accggtaata actcggaggt gcaagtggtt taaggaggcc aaggacctag cagaaggaga      5880
     tttggttctc gttgtaaacg ggacagaaag agctaaatgg gtaagaggac gaatcgagaa      5940
     aacatttgcc ggttgcgacg gacgagttcg ccaagctcta gtgcgtacag caaatggagt      6000
     attgcggcga cctgctgtta gactagccgt gttggacgtc gaagaaagac gtgaacctaa      6060
     ggaacttcag gaagatccag gaaatcacct aggttcacgg gcgggggta                  6109
//
ID   BEL-214_AA-LTR repbase;    DNA;    INV; 547 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-214_AA_;
KW   BEL-214_AA-I; BEL-214_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-547
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 886-886 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 547 BP; 175 A; 111 C; 90 G; 171 T; 0 other;
     tgtgccgaca acacccctcg gtgcagcgac gccgttacca atgacgatcg ctttccaaca        60
     ggtcgttctt gaacgatctg tcagcgatag gggagaccgt agaaacgtca aggatagaga       120
     aacacgaaag tcatctatct aaccatattt ccattgtgta ttactcagag caaaactgtt       180
     attgaactta cgagaaatct ttacgctgca gtctattaaa tttaacagaa acgtaattgt       240
     atttcaaggc aatctttatt ttttccaatt gaatttatta ttgtaagtaa tctatgaact       300
     tcttcaaatt aattagatat gttgcttaac gaatgctctc taaattccca gcccttataa       360
     cattatagta gtgcttacga tacgattcat tcatactcca tagtttgtac actaaaattg       420
     tgagtacttt agtagtaagc attgagaaac cattcaaata aattaattaa ttttctagct       480
     tgaagctaac aacgacaaag agtgcgtttg ctgtccagat ttggtgatac ttacccccac       540
     cccaaca                                                                 547
//
ID   BEL-215_AA-I repbase;    DNA;    INV; 5907 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-215_AA_;
KW   BEL-215_AA-LTR; BEL-215_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5907
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 887-887 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4956-5357] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           540..5357
FT                 /product="BEL-215_AA-I_1p"
FT                 /translation="MSDNETPRGVLKGISKKNLLETLTESHSENVPPVPSV
FT                 ADQKIAKQVFEQKKMMESKLEVLTDRRDLIMEKLMRMKETLRGEGVSIHLL
FT                 NLHLETLRRCADEFDKIHAEISALLPKEQRTAVHQEYAVFEDVHNQLYVDL
FT                 QTGIARAQEACRMNPGISNSLSIPGFQQPIVVQAAAPQLHAPFPKFDGTPE
FT                 NWYSFKSLFKSIMMKYPNETPAMKILHLRNSLEGDARSKIDQDVVNNNDYE
FT                 KAWKILEDAYEDKRLILDTHIDAILDCAAISKDNRGKSISQLVEICSKHVD
FT                 ALDGHSYPVEGLGELILLNILYKKLDKETQEQWEMKVPRGEVPDYETFMEF
FT                 LRERGRVLQRTNRSQQQQVQQSTVQARQRVTAGYKATAPSVKSFVQTTREV
FT                 CPCCQAEHAIYKCSKFQNMDYSERKSFATRAGLCYNCLKQNHRVSDCQSDQ
FT                 GCKVQGCGRKHHSFLHPKDEIRRSEEKISKPEVAGEESGPNEQEIPCATTM
FT                 CAQIDTAKQQVLLSTAEVLVVGDGGCTVKCRALLDSGSDSHILTEKIARKL
FT                 KLRMHRVDYPISGLNDIQTSAKYLVSTKIRSRINSYVTSDLDFLVISRITS
FT                 HLPLVETDIKSWKIPQGVQLADPSFHVPGEIDMIIGNEVFFDLVKKGRLKL
FT                 ENSAIMLAETEFGWVAGGSVPVTKAAPRARICQFSHQERILNETMTKFWEI
FT                 EDVCHSSKLSAAEASVEQHFKETHARDDQGRYVVRLPFNDKKFQLGDSFVM
FT                 ARKRYERLMLSLSKNPEKRMQYSEFMAEYLVLGHMKEVNVPEGDGYYIPHH
FT                 AVYKASSSTTKTRVVFDASAKSASGVSLNDAVMVGPTVQSNLVEVIMRFCG
FT                 HQVALTADVPKMYRQVCMHPDDCKYQRILWCNDQNEMKVFELQTVTYGIAS
FT                 SPYHATKALMQLVEDDGDQFPLASVVIKKDSYVDDFLTGGQTARTVINKYQ
FT                 ELSALLDRGGFGVHKFCSNSQEVLAAIPEQLHEQQVSFEESGINNTIKTLG
FT                 LIWNPAEDYFTFRVQPIDGRVSSTKREVLSDIGRLFDPLGFLGPVIAMAKM
FT                 VMQDVWRLRLDWDDLLPDELLCQWQHFREELPVINQKQKRRCVVRDRASWT
FT                 ELHGFSDASKRAYGAVVYTKCIAADGTVEVNLVASKSRVAPLKPMTIPRLE
FT                 LCGVKLLAELVQKVTTSMTIDFDEVNLWCDSQIVLCWLKKSPLTLNQFVAN
FT                 RVAAILELTPGCSWCYVRSEENPADIISRGSMPEDLVRNETWWNGPPLLWQ
FT                 QAYEGQTPDELEEALIPDIKPARSLAIISKISPINLNRVSDFRKLQRSWVY
FT                 VLRFIHLKKKKNVISVTADEMAIAEKMILKLVQKEMFSELLKQLQLKSGMR
FT                 HNLSNLAPFIGEDGLIRVGGRLKYSAIPYDGKHQVLLPEKHHVTEILVRKL
FT                 HEENHHVGHGGLLAIVRERYWPIKVKLVIKKVISKCQVCGRCNPAPGIQFM
FT                 GNIPESRVNPAPVFSKVGIDYAGPFMLKLGGRSPKVYKAYVVVFVCMAVKA
FT                 IHFEVVSNLSTDNFIAALHRFVGRRGLPSDIYSDNGTAFVGANHELVALKQ
FT                 LFEDQQHQHKVEEFCAVKGIFGILFLREALISEVFGRLV"
XX
SQ   Sequence 5907 BP; 1695 A; 1172 C; 1570 G; 1470 T; 0 other;
     ttttggtcca tccgaaccgg atgttgtgag ggttttccgg aagtgtttgc tgtttcgcgt        60
     gtggaagaag agcaccaagt gcaaaagtgc ggtccctgac cgaaaactat aagacgatta       120
     tgtccgtggc atagtgcgtg ttcgggaaaa ttgactgcat cgtgtgcagt agcgtggccc       180
     gtggccaaag tgcggtttga tttgatccta tcacaaactg catttcgttc ggagttcgtg       240
     tcgatccgtg atcgatgatt ggttgggatt gttgtggtcc gtgactagag acaatcagtg       300
     agcgtgtacg cgtcgtgatt acgtcgtgaa tacgtcgtac agcccgtggc tgaatttcaa       360
     agttgactgt gcccgtggca cagagtgaat tgacattcga acgtaccgtg tgcgtatttt       420
     ggctgtggcc aaagaaacag ttccaaaacg tttatcgggt tcgtgacacg cgtggtgaat       480
     gtggatgtgg tccgtgacgc tttgcgagct cgattgaaca ggagtgaaca agttcgaaca       540
     tgagcgataa tgaaacaccg cgtggagtgt taaaaggcat atcgaaaaag aaccttttag       600
     aaacgctaac ggaatcacat agtgaaaacg tgcctcccgt tccgtcggtg gcagatcaaa       660
     agattgcgaa gcaagtgttc gaacagaaga agatgatgga gtcaaagttg gaagtgctga       720
     cagatcggcg agatctgata atggagaagc tgatgcgaat gaaggagact ttgagagggg       780
     aaggtgtaag catacatttg ctaaaccttc atctcgaaac actgcggcga tgtgcggatg       840
     aattcgataa gattcatgca gaaatttcgg cactgctacc gaaagaacag cggaccgcag       900
     tacaccagga gtacgcggta ttcgaggatg tccataatca actttacgtt gatttgcaaa       960
     caggaattgc acgagcgcaa gaagcatgtc gcatgaatcc aggtatttca aatagcttaa      1020
     gcattccagg tttccagcag ccgattgtag tgcaagcagc tgccccgcag ctacacgctc      1080
     cgttcccgaa attcgacggg acaccggaga attggtatag ctttaagagc ctcttcaaaa      1140
     gcatcatgat gaagtaccct aacgagactc cagctatgaa gattttgcac ttacgcaatt      1200
     ctctcgaagg cgatgcgagg agcaaaattg atcaagacgt cgtgaacaac aatgactacg      1260
     aaaaagcctg gaagattctt gaagatgcct acgaagacaa gcggctgata ctggatactc      1320
     acattgatgc tattctggat tgcgctgcaa ttagcaagga caaccgtgga aaatcgattt      1380
     cgcaattagt ggaaatttgt tcgaagcatg tagatgcctt ggatggtcac agctatcctg      1440
     tcgaaggttt gggggaattg atcctactta acatccttta caagaagctt gacaaggaga      1500
     cacaagagca atgggagatg aaggtaccta gaggagaggt gccagattat gagacgttca      1560
     tggaattcct tcgtgaacgc ggacgcgttc tgcagcgtac aaatcgctcc cagcagcagc      1620
     aggttcagca gtcaacggtt caagcaaggc aacgtgtaac agcaggttac aaagcaacag      1680
     caccatctgt gaagtcgttt gtacaaacaa ctagagaagt gtgcccatgc tgtcaggcag      1740
     agcacgccat ttacaagtgt tcgaaatttc agaacatgga ctactcggaa cgcaagtcct      1800
     ttgccacaag ggcaggcttg tgttataact gtttaaagca gaatcatcgg gtaagcgact      1860
     gccagtcaga tcaaggatgc aaggtccaag gatgcggtcg taaacatcat agttttcttc      1920
     atcccaaaga tgagattcgt cggagtgaag agaagatttc gaagccagaa gtggcgggcg      1980
     aagaaagcgg gccaaatgaa caggaaattc catgcgcgac tacgatgtgt gcacagattg      2040
     atacagcgaa gcagcaagtg ttgctgtcaa ccgcagaagt tttggtggtc ggtgatggag      2100
     gctgcaccgt caaatgtcga gcattgttgg attcaggatc cgacagtcat atcctcacgg      2160
     agaaaatagc aagaaagttg aagctgagga tgcaccgcgt tgattatcct attagcggtc      2220
     tcaacgacat ccaaacctcg gcaaagtatc tggtatcgac aaaaattcgc tctcggatca      2280
     actcgtacgt gacgagtgac ttggattttt tggttatatc gagaattaca tcacatcttc      2340
     cattggtgga aaccgatatc aagtcttgga agattccaca aggcgtacaa cttgctgatc      2400
     cgtcattcca cgtgccagga gaaatcgata tgattatcgg caacgaggta ttctttgatt      2460
     tggtaaagaa ggggcgcctg aaattggaga acagtgcaat tatgttggct gaaactgagt      2520
     ttggttgggt tgcaggagga tcagtgccag tgacaaaggc tgcaccacgt gcacgtatat      2580
     gccagttcag tcatcaagaa cgaatcttga acgaaactat gacgaagttt tgggagatcg      2640
     aggacgtgtg ccatagttct aaactatcgg cggcagaggc atctgttgag caacacttta      2700
     aagagaccca tgcgagggat gatcaaggcc gttatgtagt gcgactccca ttcaacgaca      2760
     aaaagtttca acttggtgat tctttcgtta tggcgaggaa gcgctacgaa cggctgatgc      2820
     tctcattatc gaagaatcca gaaaagcgca tgcaatattc cgaatttatg gcagagtacc      2880
     ttgttcttgg ccatatgaag gaagtgaacg tcccagaagg agatggatac tatataccac      2940
     accatgcagt gtataaggca tccagttcta cgacgaagac cagagttgta tttgatgctt      3000
     cggcaaaatc ggcttctggt gtatcattaa atgacgctgt tatggttggg cccaccgtgc      3060
     agagtaacct ggtagaggtg attatgcggt tttgcggaca tcaagtggct ctgactgctg      3120
     acgttccgaa aatgtaccgg caagtttgta tgcatccaga cgactgcaaa tatcaacgga      3180
     ttttgtggtg caatgaccag aatgagatga aggtgtttga gcttcaaacc gtaacgtacg      3240
     gtatagcgag ttcaccgtac catgcaacga aggcgttgat gcaattagtt gaagacgacg      3300
     gcgatcagtt ccctttggca tccgttgtca tcaagaaaga cagttacgtc gatgacttcc      3360
     tgactggtgg acaaacagcg agaacagtga tcaacaaata tcaagaactt tcagcgctgc      3420
     ttgatcgagg aggattcggc gttcataaat tctgttccaa cagccaggaa gtattggcag      3480
     caataccaga acaactacat gaacaacaag ttagctttga ggagtctggc atcaacaaca      3540
     ctattaagac cctcggactt atttggaacc ccgctgagga ttacttcaca ttccgtgttc      3600
     aaccaattga tggaagggta tcatccacaa aaagagaagt attatcggat atcggtcgtc      3660
     ttttcgaccc gttaggattt ttaggaccgg taatagccat ggcaaagatg gtcatgcaag      3720
     acgtttggcg tctccggttg gactgggatg atttacttcc ggatgaattg ttgtgccagt      3780
     ggcagcattt tcgtgaagaa ctaccagtga tcaaccagaa gcaaaagcgt cgatgtgtgg      3840
     ttcgtgatag agcttcttgg acagaactgc atggatttag cgatgcttca aagcgggcct      3900
     acggcgcagt tgtttatacc aaatgcatag cagcagatgg tacggtggaa gtgaacctgg      3960
     tggctagcaa gtcaagagtg gcaccattga aaccgatgac gattccacgc ctggaattgt      4020
     gtggtgtaaa attattggct gagttggtgc agaaggttac aacgtccatg acgatcgact      4080
     tcgatgaagt caacttgtgg tgtgattcgc aaattgtttt atgctggttg aagaagtctc      4140
     cgttaacgtt gaatcaattt gtggctaatc gagtggcggc tattttggag cttacgccag      4200
     gctgcagttg gtgttacgtt cgatcggagg aaaatcctgc agacattatt tcgagaggat      4260
     cgatgcctga agatttggtg cgaaacgaga catggtggaa tgggccacca ctactgtggc      4320
     aacaagcgta tgaaggacaa acacctgatg aattggaaga agcgctaata ccggatatca      4380
     aaccagcaag aagtttggcg atcatcagca agatttcgcc aattaatttg aaccgtgtga      4440
     gcgacttcag aaaactgcaa agatcatggg tgtatgtgct gcggttcatc catctgaaga      4500
     aaaagaaaaa tgtgattagt gttacggcag atgaaatggc aattgcggaa aaaatgattc      4560
     ttaagttggt acaaaaggaa atgttcagtg agcttttgaa gcaattgcag ttaaagtcag      4620
     gaatgcgaca taacttgtca aacctggctc cgttcattgg agaagatggc cttatacgtg      4680
     ttgggggtcg tctgaaatat tcggcgatac cttacgatgg taaacatcag gtgttacttc      4740
     cggaaaagca tcacgtaaca gagattttgg ttcggaaact gcatgaagaa aatcatcacg      4800
     ttggacatgg aggactacta gctattgtca gagagcgata ctggccgatt aaagtaaaat      4860
     tggtaataaa gaaagtgatt tcaaagtgtc aagtctgtgg aaggtgcaat ccagcacctg      4920
     ggattcagtt catgggaaac attccggagt ctcgagtgaa tccagcgcca gtgttttcaa      4980
     aggttggaat agattacgct ggtccattca tgttgaagtt gggaggaaga agcccgaagg      5040
     tctacaaggc ttatgtggta gtgttcgttt gtatggcggt gaaggcgatc cactttgaag      5100
     ttgtatcaaa cctttcaacg gataatttca tagctgcact gcatcgtttt gtgggcagac      5160
     gaggattgcc aagtgatata tattcggaca acggaacagc gtttgttgga gccaatcacg      5220
     agcttgtggc attgaagcaa cttttcgaag atcagcagca ccagcataag gtcgaagagt      5280
     tttgtgcagt gaaaggtatt tttggcattt tattcctccg agaagccctc atttcggagg      5340
     tatttgggag gctggtgtaa aatccatgaa gcaccacctc aagcgagttg tcggcgaaac      5400
     caaattgacg ttgaagaact gacaacattt ttggcacaaa cggaagcgat attgaattct      5460
     cggccattag ttccagtgtc tgatgacccc aacgatttat caattctgac cccgtttcat      5520
     tttttgattg ggcggtcagg tttgacagta ccggaaccat cttacaagga cgagaagata      5580
     ggacggctaa gtagatggca acacatccaa ttgatgcagc aacatttttg gtcacgttgg      5640
     tccaaagaat atttgcatca tttgcaaacc cggcataagt ggaacaacag tgtgcaacaa      5700
     atcaatgtag gtgcgttggt tttgttactc gacgaaaatg tgcctaccca tcagtggcga      5760
     cgaggacgaa ttgcagcggt tcacccagga gatgacggga tagtccgcgt ggtgactgtc      5820
     catactacat ctggcgacta caagagggcg attacgaaga tcgcattcct accagctgtt      5880
     gagccagagg actcaacggg gggtgaa                                          5907
//
ID   BEL-215_AA-LTR repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-215_AA_;
KW   BEL-215_AA-I; BEL-215_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-407
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 888-888 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 407 BP; 135 A; 66 C; 97 G; 109 T; 0 other;
     tgttagcaaa actgtaatgt gtagcgaaac cataatttac aaatagacag agtttttgca        60
     tgccgtcatt gaacatcaat aggaagtttt cgttttgacg caccgcagga taataggctt       120
     tatggcaaag gagctttttt gtgtagaatg tttgcgcgcc tagatcgaaa gtttgttcgc       180
     tcgtgtggag aggaaaaggt acagtccagt aaaaaagaag aggaaagtta tcgaaagaca       240
     tgaatgaaca ggcaacagtc cattgataga ttttgaagag tagtgttctc gcggaaatta       300
     cagtgaaata aagtttgaag ttattcggaa aattaatccc atgcgttgtc agtgaaattt       360
     agaccaatcc ggagaaaacc ccaatcccct gagctgtcgt cggaaca                     407
//
ID   BEL-216_AA-I repbase;    DNA;    INV; 7457 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-216_AA_;
KW   BEL-216_AA-LTR; BEL-216_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7457
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 889-889 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5465-6049] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2825..6430
FT                 /product="BEL-216_AA-I_1p"
FT                 /translation="MPKELVLADPTFHESGAVDLIIGAEVYLELMIAERQI
FT                 KLGGSGPILQNTLLGWIVSGGVPDESTSAPAVSACATEKIEEGLARFFELE
FT                 SCRTTSTLSLEESACETHFERTTIRDSSGRFVVQLPKKQFMLDRLGDTQAI
FT                 ATRRFMALERRLDADPALKKMYTEFIDEYLRMQHMREISPRELSTFPVTYF
FT                 LPHHAVLKPDSTTTKLRVVFDASCASTTGVSLNDALMVGPVVQEDLTSITL
FT                 RFRLRKYAMTADIEKMYRMIKMHPMDHPLQCILWREDSTKPLRFFVLTTVT
FT                 YGTSSAPYLATRCLKKLAEDEKANFPAATNTIIYDFYVDDMLKSVDSIEEA
FT                 AQLSKDLVHVLGTAGLTLRKWSSNSRELLDQIPPYLRDERSSLDLELSNPT
FT                 VKTLGIKWEPRSDIFRFTVPQWNPATEFTKRIILSDFAKLFDPLGLVGPSL
FT                 VPAKVFLQELWRSKCSWNDILPDELQKWWREFRGSLEGLTHLQVPRWIAFG
FT                 SDTISVELHMFCDASAKAYGACIYLRCTSFDGTVTSTLLTAKSRVAPLEDL
FT                 KKKRKQASIPRLELSSALTGVYLFEKVVQSIKITAQPYFWTDSTIVKCWIA
FT                 APPSRWNMFVANRVSEIQHITRGGIWNHIAGLENPADVLSRGMTPDLLKDF
FT                 EMWWQGPPWLHLDKSSWPRTANINPEDLDPSLLEERSTVSVPAHVFNPSPV
FT                 FSLRSSLQDLVRIVSLIRRFAHNCRNPGDRRAGFLRHEERAEALHQLLILA
FT                 QQESFPEDLITLRRTGEVKPTSRLKQLAPRLVNGLILVGGRLRNANISAGR
FT                 KHPVILDHHHPLSVLIAAHYHQKNLHAGQQLLVASMRERYWPLAARTLARK
FT                 VIHSCVKCFRVRPKAHEQLMADLPAERVNPAPAFLRVGVDYCGPFYIQYPY
FT                 RKGGPIKCFVAVFVCLVVKAVHLEVVGDLTTQAFIAALRRFVSRRGRPEII
FT                 MCDNATNFVGARRELDELRKLFNRQEFVKAVTEEASWENINFKFIPAKSPN
FT                 FGGLWEAAVKSMKEHLKRTLGNTVLVSDEMATLVAQIEASLNSRPITPLSN
FT                 DADDLEILTPGHFLVGRPLTAIPEPSLQDLNEARLSRWQRVQYFLQRIWNR
FT                 WSTQYLSNLHARTKWTRQRNNLFIGTMVLLSEDNVPPLKWRMGRVTEIHPG
FT                 NDGNIRVVKVRTKDGDFLRAISKVCVLPIRDNEPSPSSAHGED"
XX
SQ   Sequence 7457 BP; 1850 A; 1968 C; 1847 G; 1764 T; 28 other;
     cgccgcgcaa tgagaatata taccaaggtg tggaaaaaga agcaagggct atgtattagt        60
     aaagagaaaa aaacgtaaac acaaataact acgtcactaa tttacacggc ttcttatggt       120
     agctcgcttg cttgtagttg tgaaactttt tgcaccgtac atggatgtca cgcacactaa       180
     atgtcttctt cctcacctcg gtatatattc tcattcacgc cgcgtgttta atttttgcat       240
     gtcgtacaat tgtgaacmag ctctktgakg tscaataaac cgkctcagtc cgtctaagtt       300
     gccacgcgat tttaagtttt ccgaagtgcg taaatccgac gactacagac ccagtgttaa       360
     gcccgatagt gaacattttt ggtccaagtc gaaccggatc gtcgggaaac gcgaawscaa       420
     agtgaacttt tgggccattg tgaggtaccg cgtggtcgct gattgttctc cacgagggag       480
     aacaatagga cacgtgcgtc cccgtcgtca agtgcggtcc tgccatctgg cacctcccgt       540
     gagtgttcct gcggtgtgct gtgacggacc cgaagctgct atcatcggag cttcsaccgg       600
     agaccggacg gatttgccag gcgaaccagg ataagtactg agggctgggc aggtttgtct       660
     gtggcgcgga atcttttgca tgcgagatcg ccgccgatgg aaggttagaa ttgagcgaat       720
     tgactcacaa aacgakawac catactgaat aaagaattcg tatgattgct tgctagatcg       780
     aaagtttgtg gtgtccaaat aatttatcgc tgagttgagc cctgaccagt ccgccacctc       840
     tgttggcttt ctccgcttcg ttggttggtt tgcattgtcc cgttccccct caattgcctc       900
     cactgtcaag tcaaaccgcg gggtcgattt gagtttcgcg tgcgagtgaa gtgctaaagt       960
     gacagtgcga gtgacttaca gtgttcaaat atgccaggtg gtgaggatct gcggctgctc      1020
     ttcaagcaag agcgwtcgtt gmgagtttcg ctggacaacc tgaaggagtt cgttcgctcc      1080
     cacccagacg gtscggatcg gcgtggcgtg gamctacgmc tatgcaaact cgacgaaatc      1140
     tgtggcaaat ttatcgacgt gcgaatgcga atcgagctgc tcaccgacga tgcagccgag      1200
     ggtgatattt cgaccgacac ggaagaaacg gaagaggcta agctacaacg tcacatgagg      1260
     ctacgaaagc agcaggatcg ggaaaatgca agaatcatca aggactttga gaatgaagtg      1320
     taccacctga agcaasttct gcttggscgg ctccaaccca gcccgccagc aggcccaagt      1380
     cagcagcatc gggctgcttc tcatgcaccc ccacagtcca aggtcaagct gcccgagctg      1440
     aagctccctt ccttcagtgg taggatgtcg gactgggtca catttcgtga cacgtacaag      1500
     aacctgatcc acgatgacaa caatctctcc aacatggata agttcacgta cttacgcacg      1560
     tctctcaccg gcgatgcact acaggagatc gcctcaatcg agatttcctc cgccaattat      1620
     gacattgcat ggaaggcgtt ggaaagcgtc ttcgaaaaca agaagttgct ggtgatgacg      1680
     tacctagatg ctctgttcgc tctcgagcca cttcgtcaag aaaacttcga gacgttgagc      1740
     aagcttgtta acggttttga aaaaaacctg caaatgctca ccaagatcgg tgaagatacc      1800
     gawggttgga gcacgctgct gcagtacatg gtctgcaaac gccttcattc gagcacgctg      1860
     agacagtggg agwckcatta cagctcaaag gaagtwccga agtacaagga tctgattaag      1920
     ttcctkaagg gtcactgttc ggtgttacaa tccatcgccc ctggaaggca ggtccagggc      1980
     gagccgaaga agtctgttcg tccatccctc agccatgctg gagtccagtc ctcaagtagc      2040
     tgtccgtttt gcggagaatc ggcccattcc gccttcaagt gtacgaagtt ttccaaaatg      2100
     agggtttcgg aaagggtcga cgccgtgaag aagcattcgc tttgcttgaa ctgtttgtca      2160
     tcaggacaca tcgcacgatt ctgcaccaga gggtcgtgct tccactgtgg tcaacgtcac      2220
     cactcgttac ttcacgcgaa ctcatcgacc accgcgaatt caccgaccaa gtctggacag      2280
     tcaactggga atcagtcatc gaagaaacca cacggacaga atatgcaacc accacaagct      2340
     aagccaacac caaacggtca ctcaacacac actcagccta cacaaagcgg acgcaatgat      2400
     ccacagagtc cgacaaacgc aagtaacgct caatcacaca ttccgccaca gactgcccca      2460
     gtacatccct acacactgct cctctagcaa cacaacgaca cctcccacac actgttctgc      2520
     tctccaccgc gatcgtaaat ctctacgatc agttcggtaa ctctttgctc gctcgtgcat      2580
     tgctagactc tgggtctcag cgatgctaca tgtcagagac catctcgcaa aaacttaagt      2640
     tcaagcgtac tcgtgagcac ttaccgatcg ctggaattgg tggttcacga actgcttcca      2700
     ccaaagcagt tttcgctgag gtccattcgc ttgtcacgaa atacgtgacg aacctcaaat      2760
     ttcacgtgtt gccgcgagtt actgtcgatc ttccacgcga agtatcgata ttcgatcctg      2820
     gaacatgccg aaggagctgg tattggccga tcccacmttc cacgagtctg gagcagtcga      2880
     cctgataatc ggtgctgaag tgtacttgga gctgatgatc gccgaacgtc aaatcaaatt      2940
     gggagggtct ggtccgattc tgcagaacac tctgctgggc tggattgttt ccggaggcgt      3000
     tccggacgaa tctacatccg caccagctgt gtccgcatgc gcaaccgaga agattgaaga      3060
     aggattggca cggttctttg agctggaatc gtgtcgcacc accagcacgt tgtcgttgga      3120
     ggagtcagcg tgtgaaacac atttcgagag aacgacgata cgggactcaa gtggcagatt      3180
     cgtcgttcag ctacccaaga aacagttcat gcttgatcgc ctaggagaca cccaagccat      3240
     tgccactcgt cgcttcatgg cactagagcg aagattggat gccgatcctg ccttgaagaa      3300
     gatgtacacc gagttcatcg acgagtacct ccggatgcag cacatgcgcg agatttcacc      3360
     acgagagttg agcacctttc cggtcacgta tttcttgccg caccatgcgg tacttaagcc      3420
     cgacagcaca acgaccaagc tgcgcgtcgt gtttgatgcg tcatgcgcaa gcaccactgg      3480
     agtttcgttg aacgacgctc ttatggtggg tcctgttgtc caggaggatc tcacctctat      3540
     cacgcttmga tttcgtctac ggaagtacgc aatgacagct gacatcgaga agatgtacag      3600
     aatgatcaag atgcacccga tggaccaccc actccagtgc attttgtgga gagaagattc      3660
     aaccaagccg cttcgattct tcgtcctgac aacagtcacg tacggcacat cctcagcgcc      3720
     atatttggca acgcgctgcc tgaagaagct ggcggaggat gagaaagcca attttcccgc      3780
     cgctacaaat acgatcatct acgattttta cgttgacgat atgctgaaga gcgtcgacag      3840
     catcgaggag gcagcccagc tctcgaaaga cctggttcat gttctgggta ctgctggact      3900
     cacattaagg aaatggagct ctaattctcg agaactgcta gaccaaatcc caccctatct      3960
     gcgagatgaa cgctcgtctt tggacctcga actttcgaat cccaccgtca aaacccttgg      4020
     aatcaaatgg gaacccagat cggacatatt ccgattcact gtgcctcagt ggaatcctgc      4080
     tactgagttc accaagagaa tcatcctgtc cgattttgcg aagctcttcg atccgctagg      4140
     cctagttgga cctagtttgg ttccagctaa ggtattcctc caggagcttt ggagatcaaa      4200
     gtgttcctgg aacgatattc tgcccgacga gcttcagaaa tggtggagag aattccgagg      4260
     aagtttggaa ggcctcactc atcttcaagt tcctcgttgg atcgctttcg ggagcgatac      4320
     aatttccgtg gagctccaca tgttctgcga tgcttccgcg aaggcctatg gtgcttgcat      4380
     ttacctgcgg tgcacctcgt tcgatggcac ggtcacctcg acgctattga ctgcgaaatc      4440
     tcgagtagct ccgctcgaag atcttaagaa gaagcgaaag caagcctcca taccccgtct      4500
     agaactgtcg tctgcgctca ctggagtcta tttgttcgag aaggtcgtcc aaagtatcaa      4560
     aatcactgct caaccgtact tttggactga ctcaacaatc gttaagtgct ggattgctgc      4620
     tcctccatca cgatggaaca tgttcgtggc caatagagtg tctgaaattc agcacatcac      4680
     kcgaggagga atttggaacc acatcgcggg gctggagaat ccggcagacg tcttgtcaag      4740
     gggaatgact cctgatttgc tgaaggactt cgaaatgtgg tggcaaggac caccgtggtt      4800
     gcacctagac aaatcttcct ggccgagaac ggctaacatc aacccggagg atttggatcc      4860
     ttcgctactc gaggagagat ccacggtctc agttccagct catgttttca atcccagtcc      4920
     tgtcttcagt ctacgatcgt cactccaaga tttggttcga attgtgtccc tcattcggcg      4980
     attcgcccac aactgcagaa atcctggcga ccgtagagca ggattcttaa ggcatgaaga      5040
     acgagcagag gcattacacc agctgctgat ccttgcgcaa caagaaagtt ttcctgaaga      5100
     tctcatcaca ctgcgaagaa ccggagaggt taagccaacc tcaagactga agcaactagc      5160
     tccacgtcta gtgaacggat tgattctggt tggcggccgg ctacgaaacg ccaacatttc      5220
     ggctggccgg aagcatccgg tcatactaga ccatcatcat cccctctcag tcctcatcgc      5280
     cgctcactat caccagaaaa atctgcacgc tgggcaacaa ctgctagtcg ccagcatgcg      5340
     ggaaaggtat tggccgctgg cggctcgcac cttggctcga aaggtcatcc acagctgcgt      5400
     aaaatgcttt cgggtccgtc cgaaggcgca cgagcaactc atggcggact taccagcaga      5460
     acgtgtcaat ccagctccag cgtttctgcg cgtaggggtg gactactgtg gtccgttcta      5520
     catccagtac ccctaccgca agggcggtcc aatcaaatgc ttcgtcgccg tgttcgtttg      5580
     tcttgtcgta aaggccgttc atctggaggt cgttggagac ctcacgactc aagccttcat      5640
     cgccgctttg agaagatttg tctcccgccg aggtcgccca gaaatcatca tgtgcgataa      5700
     cgcaacaaat tttgtcggcg cacgccgtga gttggatgag ctgcggaagt tgttcaaccg      5760
     tcaagagttc gtgaaggcgg ttacagaaga ggcttcctgg gagaacatta acttcaagtt      5820
     tattccggcg aagtccccca acttcggagg cctttgggag gccgccgtca agtcaatgaa      5880
     ggagcatttg aagcggaccc tcggcaacac agtgctcgtg tcggacgaaa tggctaccct      5940
     ggtggcacaa attgaagcta gcctcaactc gaggccaatc acaccccttt cgaacgatgc      6000
     ggacgatcta gaaattttga ctcccggtca ctttttggtg gggaggccgc tcacagcaat      6060
     accagaacca tcgctgcaag atctcaacga ggcaagactg tcaagatggc agcgagtgca      6120
     gtattttctt caacgaattt ggaatcgttg gtcaacgcag tacctgtcca atctgcacgc      6180
     ccgcacaaaa tggaccaggc aacggaataa cctgtttatc ggcactatgg tgctgctcag      6240
     cgaggacaac gtgccacccc tcaagtggcg aatgggtcga gtcacagaga ttcacccggg      6300
     gaacgacggc aatatccgtg tcgtcaaggt tcgcacgaag gacggcgact tccttcgagc      6360
     gatctccaaa gtttgtgtcc tgccaatacg ggacaacgaa ccgtcgccct cttcggctca      6420
     cggggaggat tgattccttc tcccacgagc gctctacggc gctgccgagg cctccgggtc      6480
     tcggcgttcc agttaagttt ttgtttatca atatatggtc aaaaagctca gagaatgttt      6540
     cgtcctccat agtcaaattc acccacggcg gccggagccg cccaaccgat tttccgaagt      6600
     ttgtcatccc actactacga tgtctggtcc atctattttg tcgcagttwc gtcaatctca      6660
     actcagttcc tgtggtcgtg caatcaagct gatgcgtcaa gtattctgtg ggggttgagg      6720
     aatccccaca caaagttacg tatattgcat gccgttagtg atttcgtgca atcaaacacc      6780
     atttcatttg cccagcagga tacagtccat acattcaccg tacctcaagg gtttacctgg      6840
     cggacgatgg cctacacgat aaggtccact atcctcatag aagtcatgat gtccggtgtc      6900
     gctcttgtgt cttcatccag catccacgtt catcctgaag ttgttccgat gccaggaaca      6960
     gtcatccagc camcaacaga ggatagatca acggaatcat cggtggcgca tcggcgcctg      7020
     cggaggcgga cggcctccgc gacccaggga agtcgttttt tgtttcattt ttaccgttaa      7080
     aaaatcgctt ctcatctcat tcatagattc ggctcgaagg accacctcaa ctgaggtcgg      7140
     ttggtttccc attacttgga cgtaaccgtg gtgagcctca gcgcgcacag tactaacgat      7200
     cgataccaca caggccgtgt gccggaaatc gctcgcgaac gaaggaagag aatsaactac      7260
     atcggtagcg gttagaggtt cccaaataca gtcaacctgg cagctgatca tcatcttcag      7320
     ctaccaacag tttctgcagt gtttacatgc acgtagtatt aatattattc gctagttgat      7380
     aaggtgttgg aattgttttt gcgttacgat aagaatatta gctaatttga aatccggtta      7440
     tttcaaggcg gccggta                                                     7457
//
ID   BEL-216_AA-LTR repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-216_AA_;
KW   BEL-216_AA-I; BEL-216_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-345
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 890-890 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 345 BP; 102 A; 92 C; 56 G; 95 T; 0 other;
     tgtttgcgcc aatcgccgat agccatcagc ttataggaca caaatccatt tagctttgct        60
     tcgacacata aatctcgacg atatccatta cataccacta caggatcact aactccttca       120
     ttagtgtccg agcagataaa ctatagttct actgttcttt ctaatgtaaa ttataagtct       180
     atcccatacc gtatcgatcg cttcacggat cgaagatagg gccgaccgca ggtagcgatc       240
     cgatgtccag aaaacatcgc acccggtcag taggcaatcc aaataattgt atctaatcag       300
     tctgcaataa accacacact cgattcgatc gtttcctttc tcaca                       345
//
ID   BEL-217_AA-I repbase;    DNA;    INV; 5924 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-217_AA_;
KW   BEL-217_AA-LTR; BEL-217_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5924
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 891-891 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4581-5180] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1074..3341
FT                 /product="BEL-217_AA-I_2p"
FT                 /translation="MQLQEEIGRSTLRPMENVKFKDLTEFIQRRVTVLQSI
FT                 QPKVVDTPPSVQGKKPAQRPVSSHGANQLSPRKCLVCSDHHPLYLCGSFAK
FT                 LSAEDKEKEVRRHQLCRNCLRKGHQSRECSSSTSCRKCRGRHHTLLCVNGL
FT                 SSQSTSKPLSAPQSKLPTSSSEDSDAPITSASATRMESSSCPSAGHQQKTV
FT                 LLATALITLVDDSGVEHIGRALLDSGSECCFITERLSQRMKAQRQKIYLPI
FT                 SGIGQSGTHAKQKFSSIIRSRSGEYSTTIDLFVLPKVTIDLPATSVDTSTW
FT                 NMPPGIQLADPSFDGTKPVDIILGAEIFFELFRVPGRIPLGEHLPVLVNSV
FT                 FGWVVSGRSTERSFNPTVVANVATIADIHQLMERFWVIEEDSSPTTHSVEE
FT                 QACEKHFRRTVSRTPEGRYVVRLPFKENVLDRLNDNRRTAVRRFHLLQGRL
FT                 DRNPELQQQYKAFIDEYVALGHMHRIHEYDDPTVKRFYLPHHAVLREDSAT
FT                 TKLRVVFDASCKTPAGPSLNDALMVGPTVQEDIRSITMRSRKHQVMVVADV
FT                 KMMYRQVLVDPRDTPVQLIVWKPSPDQPLETYELDTVTYGTASAPFLATRV
FT                 LIQLADDECSNFPLAAPVVKKDFYVDDLFSGGKHAEEVIELRNQLEALLAK
FT                 GGFQLRKWASNNEAVLDGIPPENRALSTSIELDPDQTIKTLGLHWEPFADC
FT                 LRYKVELPSDSSTHPLTKRLASLSNRATIRPAWPCGASCDDRQGVHAKSVD
FT                 LEGRR"
FT   CDS           4581..5555
FT                 /product="BEL-217_AA-I_3p"
FT                 /translation="MAELPSSRITASRAFSITGVDYWGPILLKPVHRRAAP
FT                 GKAYVAVFICFSTKAVHLELVGDLSTAKFIQSLRRFVSRRGLCKHLYSDNG
FT                 RNFVGAANELKRLVNNKDYQNAVAQECTAHQIRWHFNPPKASNFGGLWEAA
FT                 IQSAQKHFVRVLGKNTLPYDDMETLLCQIESCLNSRPLTPLSDDPSDYESL
FT                 TPGHFLIGSALQSIPDVDYTEIPSNRLTKWHHVQKLFQQLWERWHLEYLSS
FT                 LQQRTKWLSPPVPIQKNQLVLLCEENIPPMHWPTARIEQVHPGSDGIVRVV
FT                 TLQTPAGSFVRPVNKICILPIASSLDQQSATSN"
XX
SQ   Sequence 5924 BP; 1533 A; 1687 C; 1299 G; 1405 T; 0 other;
     actggtcctt cgaaccggat cacgtcgaat ctccgtaagt ccggcagtcc tgtgctagcg        60
     agtcgctatc atctacccgc catcgtgccc gccggagggt tccagaacaa tcgacactcg       120
     tctccattcc tacaagcccg agatactgtt tgctttgacg caactcggtt ggattctgat       180
     catacaaggc aatttaattg cctctagcag gtaattaaca ctccaactac tctactttct       240
     gctctgtgcg tgctacgctt gtccatttgt ccacagaacc ccttctgttg ccgtaatgtc       300
     caccgaacgt cgcattaaga cactcaaagg tcggataaag agtctgacgg catctctcac       360
     ctccatcaag accttcgtag atgggttcga cgaggacacg caatccgaag agattccagt       420
     ccggctggag agtctctgca gtttatgggc ggagtacaac acgacgcaaa gcgaactgga       480
     agggctcgac gaaaccgctc tcgattccca cataaagcaa cggacagcgc tagaagcaac       540
     ctactatcga atcaagggct tcttactggc ccagaataaa actcctttaa atcgaagcct       600
     ttcatctacc cctaattctg acatacaagc ccctttgtcc acatcgcagg tgcgattacc       660
     ggatatcaag ttgcccatat tcgatggaag ggtggagaat tggcttgtct tccacgattt       720
     gtatctttcg ctggtccact catcgactgc actctcgaat atccagaagt tttattatct       780
     acggtcatcg ctctcgaact cggctcttca aaaaatccaa tcaatcccaa taagtgccga       840
     taactatgcg gtagcgtgga atatgcttct gaaagagtat caaaaccaag cgcgtttgaa       900
     gcaggcctat gtcgatgcac tcttcgactt ttcagtgctc aagcgtgaat cggcatttga       960
     actccgcagt ttagtggagc ggtttgaagc caatgtcaaa gttctgcacc agctgaacga      1020
     gagaacggag cactgggaca tcttgctcgt ccgtatgctc agcacccgcc tcgatgcaac      1080
     tacaagaaga gattgggagg agcactcttc gtcccatgga gaacgtcaag ttcaaggact      1140
     tgactgagtt cattcagcga cgcgtcaccg tacttcaatc catccaacca aaggtcgtcg      1200
     atactccgcc atctgtccaa gggaagaagc cagcccagcg tcctgtttct agccacgggg      1260
     ccaatcagct cagtcctcgg aaatgcctcg tttgttcgga tcaccaccct ctatacttgt      1320
     gcggaagttt tgcaaaactg tcagctgagg acaaggaaaa ggaggtacgt cgacaccagc      1380
     tgtgtcgaaa ctgtttgcgc aaaggtcatc agtcccgaga atgctcctcg tccaccagct      1440
     gtcgcaagtg ccgcggacgg catcatactc tactttgtgt caacggttta tcttcacaat      1500
     ctacgtcgaa acctctaagc gccccacaat caaaactacc aacatcctcg tctgaagact      1560
     ctgatgctcc aattacctct gcatcagcta cgcgcatgga gtcctcgagt tgtccatccg      1620
     ccggccatca acagaaaacc gtccttctgg ctacagcgtt gatcactctc gtcgacgaca      1680
     gcggcgtcga acacatcgga cgcgctctgt tggactcggg cagcgagtgc tgctttatca      1740
     cggaacggtt gtcgcagcgc atgaaggccc agcggcagaa aatctacttg ccgatcagtg      1800
     gaatcgggca gtcaggtaca cacgccaagc aaaaattctc ctccatcatc cgctcacgaa      1860
     gtggcgagta ctccaccact atcgatctgt tcgttcttcc caaagtaact attgacctac      1920
     cagctacatc cgtcgatact tcgacatgga atatgccacc tggcattcaa ctagcggacc      1980
     cctcattcga cggcaccaaa ccagtagaca tcatacttgg cgctgaaatc tttttcgaat      2040
     tgttccgcgt cccaggtcga attcctctag gcgaacatct cccagtactc gtgaattcgg      2100
     tttttggatg ggttgtgtct ggaaggtcca ccgagagatc cttcaatcca acagttgtcg      2160
     ctaacgtagc caccatcgcc gatattcacc agctcatgga aagattctgg gttattgagg      2220
     aagatagttc acccacaacg cattctgtcg aagagcaagc ctgcgagaag catttccgcc      2280
     gtactgtctc acgtactcca gagggtaggt acgttgttcg cttgccgttt aaggaaaacg      2340
     tcctcgatcg actgaacgat aaccgaagaa ctgctgttcg tcgctttcat ctcctacaag      2400
     gtcgtctgga ccgaaatccc gagctacagc aacaatataa agctttcatt gacgagtacg      2460
     tggctctagg tcatatgcac cgcatacatg aatacgacga tcctaccgtc aaacgcttct      2520
     atctgccgca tcacgcggtg ctccgtgagg acagcgccac cacgaagcta cgggtagtct      2580
     tcgatgcttc gtgtaagact ccagccggtc catccttgaa tgatgcgctc atggtcggac      2640
     caacggttca agaagacatc cgatcgataa ctatgcgatc ccggaagcat caagtcatgg      2700
     tagtcgccga cgtaaaaatg atgtaccgtc aggtactcgt agatccacga gatacacccg      2760
     tccagcttat tgtatggaag ccgtcaccag atcaaccgtt ggagacatac gaattggaca      2820
     ccgtaacgta cggtactgcg agcgcgccat tccttgccac tcgcgtactg atccaactgg      2880
     ccgacgacga atgttccaat tttccactag ccgcacctgt tgtaaaaaag gatttctatg      2940
     tagatgatct gttttcaggt ggaaaacacg cagaagaagt aattgagctt cggaatcagc      3000
     tagaagctct tctagcaaag ggtggatttc aactacgcaa atgggcatct aacaacgaag      3060
     cagtactcga cggaattccc cctgaaaacc gggccctgag cacctcaata gaacttgatc      3120
     ccgaccagac tataaagacg cttggactcc actgggaacc tttcgcagat tgcctccgat      3180
     acaaggtcga actgccatcg gattcatcta cccatcctct aacaaaacgt cttgcctctc      3240
     tctctaatcg cgcgactata cgacccgctt ggccttgtgg ggccagttgt gacgatcgcc      3300
     aaggtgttca tgcaaagtct gtggaccttg aaggacgacg atgacaaacc gtggggctgg      3360
     gatagagagc tgccgaagga gtaccaaaca cgttggatga agtatcagtc gttgctccca      3420
     aaccttaaca aacttcgcat cgatcgttgc atcctccttc cagaaccaga aatcatccag      3480
     attcacattt tctccgatgc gtcgaaactt gcatacggtg cctgcgccta cgttagatct      3540
     atcaccgctg atgggctagt gaaggttgct ctactctccg ctaaatcccg cgtagcccca      3600
     ctacagagtc gtagcattcc ccgtcttgag ttgtgcggcg cactattggc cgccgaactt      3660
     tacaagaaag tccaatcgtc attacaactc gatgcagaat cctttttctg ggtcgatagc      3720
     actgtcgttt tatgctggct caacgcttcg ccttcgacat ggaacacgtt tgtggccaat      3780
     cgtacttcca aaattcagct agccacccca aacagtgcat ggaatcacgt tgctggtggg      3840
     agaaccctgc tgactgcctt tccgcggtct cactgccgat gccatcatta acttcgacct      3900
     gtggtggcac ggaccccaat ggctacaaca accccaacaa tctggtcgat aacccatccc      3960
     acctgaacaa tcatcagaag cattgaaaga gatacgtcga tcgtccgtag ccgtcccatc      4020
     aaccccaacg gatccatcct tcatcgacat catcgttgga aaattctcca acttccatcg      4080
     cctcattcga gtagtcgctt actgtcaacg attccttcgc aactgtcgaa gttccctcgg      4140
     gcgagagatc tatcgcaaca atcctcaacg tagatgagct actggaagct gaacactgca      4200
     tcatccgttt agttcaactt caatccttca gccaagaatg gagtcagctg aaaaataatc      4260
     tcccagtatc gtcaaaatcc cgtctgaaat ggtttcatcc gtttgtatcg tcggagaacg      4320
     taatccggat tggtggccgg ttgggaactg ctgttcagcc atacgatgcc aggcaccaaa      4380
     ttcttctgcc acgatcacac ccattttcgc ttctcctagt ccgcaactac cacgaacgtc      4440
     accttcatgc agccccccag ttgctgctca acctgcttcg acaacgatac tgggtcatag      4500
     gggccaggag tctggccaag aacgttgtcc acaactgcat cgtttgctgt cgagcacgcc      4560
     cacgcctact gcaacaattt atggctgagt tgccatcatc acgaatcact gccagtcgag      4620
     cattttccat aacgggagta gactactggg ggcccattct actcaaacca gttcatcgcc      4680
     gtgctgcacc aggaaaagct tatgttgccg tcttcatatg cttcagcacc aaagcggtgc      4740
     atttggagct ggtgggggat ctaagcactg ccaagttcat ccaatccctc cgccgattcg      4800
     tatcacgccg aggattgtgc aaacacctgt acagtgataa cgggagaaac tttgtgggag      4860
     ccgccaacga gctaaagcgg ctcgtgaaca acaaagacta ccagaatgcc gtcgcacagg      4920
     aatgtaccgc gcatcaaatt cgctggcatt tcaacccgcc gaaggcgtca aactttggtg      4980
     gcctctggga ggctgccata cagtctgccc aaaagcattt cgtccgcgtc ctcggaaaaa      5040
     acactctacc gtacgatgac atggagactc ttctgtgtca aattgaatcc tgtttgaatt      5100
     cgcgtccact tacgccattg agtgacgacc catcggacta cgaatcgtta acgccaggtc      5160
     attttcttat tggatcagca ctccaatcga ttcctgacgt cgattacacc gaaattccat      5220
     caaatcggct taccaaatgg caccacgtcc aaaaactgtt ccagcagcta tgggaaaggt      5280
     ggcacttaga gtatctttcg tcactacaac aacgaaccaa gtggctttct cctcctgttc      5340
     cgatccagaa aaatcaactc gtcctactct gcgaggaaaa catcccaccg atgcattggc      5400
     caaccgcaag gatcgagcaa gttcatcccg gctcagacgg catcgtcagg gtagtaaccc      5460
     ttcaaacacc tgctggaagt ttcgtccgac cggtaaacaa aatttgcatc ctgccgatcg      5520
     catcatcttt ggaccaacaa tcggcgactt caaactgaac gcactcacaa caaaacagca      5580
     tcacaacaga agcctcatcc agaaaatttt cgcatccaat actgtcgcaa tccattttca      5640
     accagcaccg catcatctgt cctgcaagag tacctaaaag caaagaatgc aaggcatatt      5700
     attagcctgg atcaggtaag cacctgtcca aattatttaa atttcgcgaa acccgctacc      5760
     gggtcttttg ctttccagat gtcatcctcg attgcatcat gccacttgat ttgacgtttt      5820
     ccaatcaaaa caacgaagtt catcgatcgt gccgcaagcc ccgagagctg tcatccacat      5880
     cgtcgtgaaa ggtgtcagaa acaacgttcc tgaaggggcc agca                       5924
//
ID   BEL-217_AA-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-217_AA_;
KW   BEL-217_AA-I; BEL-217_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-539
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 892-892 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 539 BP; 168 A; 105 C; 120 G; 146 T; 0 other;
     tgttcgtgta accacgaaaa agggaattaa gggactacgc gcgccatctg cttctcaaaa        60
     gaaatattgt caattcatct tatctccccc gttcgtcgac atcgataatg gcccaaaatg       120
     agatggaaag agaactacca tggctgcaca ccttcttccg ggacaccttg atataaaagg       180
     aacctaggga catgtgtcac gctctctttt tatgctgcaa gaactcggac gtcattgagg       240
     ggactgcacg gagaaaagtt tataattgaa ttaagagtgg aagtagtgaa atttgtgaac       300
     attgttatta aattgaagta aaatagaagt gaagtaaaga aagttacctg aaaataaagt       360
     tcgatttcgt taagttaacg cgtgtgagtg atttacttac ctgcctaagt cgcctgccat       420
     ctgggataac ctgaaaagga agaaaaacta gtggtgatac ttacctgagc ctgtagtgat       480
     ctggaatttc cctatcgcta aaattttgga tccgctaccg ctcgctgtgc tactcgaca        539
//
ID   BEL-218_AA-I repbase;    DNA;    INV; 2455 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-218_AA_;
KW   BEL-218_AA-LTR; BEL-218_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2455
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 893-893 (2011).
XX
DR   [1] (Consensus)
XX
CC   'AAGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           369..2318
FT                 /product="BEL-218_AA-I_1p"
FT                 /translation="MSAAERKLRGLKNRKRSIITSFTAIKAFISGYQAERD
FT                 KCEVPVRLENLIALWDEFSSVQTELETIEEDDDALELYLKERMELERIYYR
FT                 AKGTLLLWNQPATQLAPTQPRENANQACVKLPDIKLPVFSGQFDEWLNFHD
FT                 LFISLVHSSSNLSTIEKFYYLRSSLAGEALQLIQTIPISNEQYSVAWNLLE
FT                 SHFQNPRRLKRTYVQSLFDFPVMKRETAAELHSLIDKFQTNVKILKQLGEE
FT                 TEHWDVLLIHLLSTRLDSVTRRSWEEYSESNNATKFQQLTDFLQHRVNVLE
FT                 TVNGLTDAQFYARKSIVSRAASFDASDHNFRPCPACSNQHFLYQCSVFLEM
FT                 TIDGREQLVRRHQLCRNCLRRGHGLSECLSESRCRKCSERHHTKLCSISDS
FT                 VRNSSYATSSHQDQFSEFSQTSDAARPSSPPPAAYTGVTSCTSQQGSRSKV
FT                 LLATATVVMVDDDGREHHVRALLDSGSECSFATERLAQRMKVHRQRTNVPI
FT                 AGIGQASTEVRSKFWTCVKSRVSKYTKKIELFILPKVTVDLPSIPVKVTNW
FT                 PLPTGIHLADNGFYQPAPIDVVFGADLFFDIFNVDGRIPLGESLPTLVNSA
FT                 FGWVVSGRISSDQDVPSAVCNLAAVNWTTEGTSRSYRCPYVKSRIFRRRIT
FT                 H"
XX
SQ   Sequence 2455 BP; 698 A; 580 C; 527 G; 650 T; 0 other;
     tggtccttcg agccggatgg gtgtcgagtg aagtccaccc aagccagtaa aacccgccat        60
     cgtactacgt aatatcgccc agtgaataca ctattctgct ccacaaaaaa taaggcatcg       120
     ttaatgcctc acataggtga gtgcggttcc atccaactta tattgttgag ggttttctac       180
     cgtgatcttt tttcatgtac caatcatcga gtggttaact gcgacgatca aatcagtgcc       240
     attgaattga atgaagtaag aatactccat ctactacgat tgcgaatcgc aacccgcgag       300
     agaagaactt tggaatttga tacaagcaat caattgcctg ggcgcagaat tcatcagcaa       360
     cgcttgtaat gtcggctgcc gagcgaaaac tgcgcggttt gaagaatcgt aagagaagca       420
     tcattacgtc attcactgca atcaaggcct ttatatcggg ataccaagcc gaacgtgata       480
     aatgtgaagt tcccgtccgg ctagagaacc ttatcgcact ctgggatgaa ttcagctctg       540
     tacaaactga actggaaaca atagaagaag atgatgatgc actagaactc tacctcaaag       600
     aacgcatgga actagagcgc atctactacc gtgccaaggg tacgctacta ttgtggaatc       660
     agcctgccac acagcttgca cctacacaac cgagagagaa tgcaaatcag gcctgcgtca       720
     aactgccaga cattaaatta cctgttttca gtggacaatt cgatgaatgg ctcaactttc       780
     atgatctttt catctctctt gtgcattctt cgtcaaatct ttccacaata gaaaagtttt       840
     attatctgcg ctcgtcgttg gccggtgaag ctctgcagct catccaaact ataccgatca       900
     gcaatgaaca atactccgtt gcttggaacc ttctagaaag tcactttcag aacccacgtc       960
     gtttgaagcg cacatacgtt caatcgctat tcgactttcc tgtgatgaag cgcgaaacag      1020
     ccgcagaatt gcactctctt atagataagt ttcaaaccaa cgtaaaaatt ttgaaacagt      1080
     tgggagagga aaccgaacac tgggatgtac tccttattca tctattaagc actcgactag      1140
     attctgtgac cagacgtagc tgggaggagt attcggaatc gaacaatgca acgaagtttc      1200
     aacagctcac tgatttcctt cagcatcgtg tcaacgtcct ggaaacagtc aacggtttaa      1260
     cggatgctca attctatgcg aggaaatcaa tcgtctcacg tgcagcaagt ttcgacgcct      1320
     cggaccacaa ctttcgccct tgcccagcat gttcgaatca acattttctc taccagtgta      1380
     gcgtatttct tgaaatgacc attgacggaa gggagcaact ggttcgacgt catcaacttt      1440
     gtcgcaactg tttacgacga ggacacggct taagcgaatg tttatccgag agccgctgcc      1500
     gcaaatgtag cgaacgtcat cacaccaaat tgtgcagtat ttctgatagc gtcaggaata      1560
     gtagttacgc cacttcttct catcaggatc aatttagcga atttagccaa actagcgacg      1620
     ctgctagacc atcttctcca ccaccagcgg cgtatacagg agttacgagc tgtacttcac      1680
     agcaaggatc ccgaagcaag gtactgttag caacagcgac tgttgtcatg gtagatgatg      1740
     acggtaggga acaccatgtc agagcattac ttgattctgg cagtgaatgt agttttgcaa      1800
     ctgaacggct cgctcaacga atgaaggtgc atcgtcagag aacaaacgtt cctattgcag      1860
     gtattggtca agcgtcgacc gaagttcgtt ccaaattttg gacttgcgtt aagtctcggg      1920
     tttctaaata cactaagaaa attgaactat tcatccttcc caaagtaacc gtggacttgc      1980
     cgtcaattcc tgtcaaggta actaactggc cactccctac gggtatacac cttgctgata      2040
     acggattcta tcaacccgcc ccaatcgatg tcgtattcgg cgcggatttg ttcttcgata      2100
     ttttcaacgt cgatgggcga attccgcttg gtgaatcttt gccaaccttg gtaaattctg      2160
     cgttcggttg ggtagtcagt ggcaggattt caagtgatca agatgttcca tcagctgttt      2220
     gcaatctagc tgctgtaaac tggaccacag aaggcaccag cagaagttac cgatgtccat      2280
     atgtcaaatc acgaatattc cgacgtcgga ttacccatta atttctttga gcatcaatca      2340
     atgccttgtg gatattatca caatgtgtca acatcaaccg taacctacgg aagcaaaaat      2400
     taatagtctg ttgcatttaa taaattcaga aacagttatt tctgcggggg cagta           2455
//
ID   BEL-218_AA-LTR repbase;    DNA;    INV; 374 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-218_AA_;
KW   BEL-218_AA-I; BEL-218_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-374
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 894-894 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 374 BP; 128 A; 66 C; 61 G; 119 T; 0 other;
     tgttcgatca catcgattta tatttatccc atcatatctg tcgatctact acaacaacaa        60
     atttgtgcta taaatcttcc tatatctgcg ttgtgtttgg aagaagcaca atataatagc       120
     cgtgtgctcc aataaatgca aaggcaataa gcatagagag gaggaatgac aacctagaca       180
     taacaacaac tcacggaaga caaaatcgca tccacgtatt ttagatttta actatgtatt       240
     ccaatctgtt ttgtatcgaa agtgttttta tgtgtccgat taaatgttat tttaagtata       300
     aatatagtgt ttgtgtgaac agaactacaa aaccgactat tcttcgagtg aactgattcg       360
     caagctatta aaca                                                         374
//
ID   BEL-219_AA-I repbase;    DNA;    INV; 6348 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-219_AA_;
KW   BEL-219_AA-LTR; BEL-219_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6348
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 895-895 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5383-5670] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..3058
FT                 /product="BEL-219_AA-I_2p"
FT                 /translation="MINRTPIKTRSAAAARVTQSTELDGATNTPIRCKACA
FT                 EPNTTRAIRCFECEDEYHVECVEVTERGVQDWRCSACLGKQGDKLKKTTSV
FT                 PISEPFVSSTNPSSQTMQTTVTSLDTYSNPVQNMSAPSTLLISPGSLFPPL
FT                 PPHSLLPPHSVIPPNSFAPPCYSIPSYQPAQYQYAMPIPPSRQSNMHVSFA
FT                 SGKNYEQCNTVQSSFGQLIPSVFNAVPSTSYNSMGIITSLPEGRPEETPAS
FT                 AFTKYPHQGLEDNHSQYSGTSSQRSTKQRQLKLKLQILEEQRQLQEKEEAT
FT                 KREYLRKRHELMTEIANEEESVIDMEQELPEARVSNWLQGKDPGPVTGAQN
FT                 HQHFLVRPEQSSTIRENTNQQFRTSVEGLPRTHRQGETRLNRSAPRSSIQQ
FT                 VTSAFGQMQMGNNDQQSAVNQGPHSSIGMAPPQISTSISTPRLMDFDGEDE
FT                 VFLSRSHIAARQAVSRDLPTFNGTPEEWPLFYSTFTTTTRMCGYTQEENLI
FT                 RLQKCLKGKAHEAVKCRLMHPSNVPGIMSTLKMLYGNPEVIVQNLIAKIQS
FT                 TPQPKAEKLDTIIEFSLAIQNLCATIEACKLDEYSYNIALLNEFVNKLPCG
FT                 FKVEWAKHRRNLPRANIREFAYWLNELAETVCPIASLQSSGVKNAQGNKNS
FT                 AYLHAHSEDTFEDSTENPSKSFKYTRSDQTLECVACKSSCPTLEKCQRFVE
FT                 LGYNSKWDVVKEFGLCRKCLRKHKGPCRSQQVCGKNGCTYKHHQLLHNYQR
FT                 DQTNATNSKEEDSKAVVQNSSGECNMHRQHKSTVLFRVLPITLHAQNKSIK
FT                 TYAFLDDGSSLTLIDASLAQELNLTGRSEPLCLKWTGNNSRREDDSKNINV
FT                 EISGTGKASKTYTAVAHTVASLNLFRQTIDAQKLKAQYSHLQGIPLESYRN
FT                 IQPKILIGSDNANLIFQLKGREGKFQEPIATKTRLGWSVYGGTTGVDALVG
FT                 HHSVQICPCNTQSDEILQQAICEYFSFDALGIYKPEKVLESHENQRAREIL
FT                 QR"
FT   CDS           3175..5655
FT                 /product="BEL-219_AA-I_1p"
FT                 /translation="MKKQPELAAVLRDKIEDYKRKGYIRKLTNEEIHARHE
FT                 RVWYLPLFPVFNPNKPGKVRVVWDAAAKTNGVSLNSLLLKGPDLLTPLDYV
FT                 LYRFREFRVGLSGDVREMYLQMLMAEKDQHCLRVLWNDDSAGDPNTYVTQV
FT                 MPFGTNCSPTCAQYVKNLNAKKYEEQYPEAANAIIKQHYVDDMLVSVETEE
FT                 EAIKLAKEVKFVHSQAGFDMRNWISNSSAVVEAMMEDTPQDKNLNIGAELG
FT                 TEKVLGMWWCTSTDTFTYRLSSKHDPALLEGLRKPTKREILRTLMAVFDPL
FT                 GLISNVLIYLKVLFQEVWRSGIGWDDVIPEHLHEKWEQWLEILPAVQNIRI
FT                 PRCYRLTTQLSAQTNIQLHTFVDASLSGYAAVVYLRFEQGNTVECAIVGAK
FT                 TRVAPLKFVSIPRLELQAAVIGVRLADTITRALSIKVHQRCFWSDSRDVLC
FT                 WIRSDHRRYSQFVAFRVSEILESTTMAQWGHKGSKENVADEATKWQGLPDL
FT                 SSNSRWFRGPSFLWETSNTWPSNPFETDTTSEELRAQICYHHEHVEGLIKP
FT                 QDFSSWTRMQRIVATVIRSIHNLRCKANKAQRRIGPLSAYELQQGAIHLYR
FT                 LAQADAFGDEISMLSSGTDRVTLPKASAIYSFNPFIDANKLLRMQGRISAC
FT                 EYASMDCKNPIILPKDHHVTWLVVQHYHERYHHQNHTTVINELRQSFKIPK
FT                 IRRLFQRVRTTCQKCKIHAASPRPPIMGDLPPDRLAAFARPFSFVGIDYFG
FT                 PMTVAVGRRTEKRWGVLITCLTMRAVHIEVAHSLNAASCVMALRNFMARRG
FT                 VPIRIHSDRGTNFTAAKKELAAAND"
XX
SQ   Sequence 6348 BP; 1928 A; 1437 C; 1470 G; 1497 T; 16 other;
     atttaaaatc ttcgtttact gatcaagtgg agctatgatc aatcgcacac ctatcaagac        60
     gaggagtgcc gctgcagcca gagtgactca atcaacggag ctggatggtg cgaccaatac       120
     tcccatcaga tgcaaagcat gcgccgaacc gaacaccaca cgagcgatcc gttgtttcga       180
     gtgtgaggat gagtaccatg tagaatgcgt tgaagtcacc gaaagaggag tccaagattg       240
     gcggtgttcc gcctgtttag gaaaacaagg agataagtta aagaagacaa cgagtgttcc       300
     tatcagtgag ccatttgtaa gtagcaccaa tccaagctcg caaacgatgc aaacgacggt       360
     aacatcgtta gatacttatt cgaacccagt acagaacatg tcggccccgt ccacgttatt       420
     gatatcacca ggttcacttt ttccgccttt gcccccacat tcgctactgc cacctcattc       480
     agtaattcca ccaaattcgt ttgcaccacc ttgctattca atcccgtcat atcaaccagc       540
     acaatatcag tacgccatgc caatcccacc aagtcgtcag tcaaatatgc acgtttcgtt       600
     cgcgagtgga aaaaattacg agcagtgcaa cacggtgcaa tctagtttcg gtcagctaat       660
     tccatccgta ttcaacgcag ttccatcaac ttcctacaat tcaatgggca tcatcaccag       720
     tctacccgaa ggtagacccg aggaaactcc ggcttcagcg tttacaaagt atcctcatca       780
     aggcttagag gacaaccaca gccagtattc cggaaccagt tcacaaaggt cgaccaagca       840
     gagacaattg aaattgaagt tgcagatttt agaagaacaa agacagctgc aggaaaagga       900
     agaagcaact aaacgcgagt atctacgcaa acgacacgaa ttgatgacgg aaatcgccaa       960
     tgaggaagag tcagttatcg atatggaaca agaattacca gaggctcgag tatccaactg      1020
     gctacaggga aaggatccgg gccctgttac aggggcgcag aatcatcagc attttttagt      1080
     cagacctgaa caatcatcaa ccatacgcga aaacaccaac caacaatttc gaacttcagt      1140
     tgaaggactt ccaagaactc atcgtcaagg cgaaactcgt ttgaatcgtt cagctccacg      1200
     aagttccatc caacaagtga catcggcgtt cgggcagatg caaatgggaa acaacgatca      1260
     acaatctgca gtcaaccaag gtccacattc aagcatcggt atggcacctc ctcagatttc      1320
     aacctcgatt tcaactccta gattaatgga ctttgatgga gaagatgaag ttttcttatc      1380
     ccgtagtcat atcgcggctc gtcaagctgt ttctcgtgac cttcctacat tcaatggcac      1440
     cccggaagaa tggccgttgt tttactcgac atttactaca accactagaa tgtgcgggta      1500
     tacacaggaa gagaatctca ttcgactaca gaagtgtttg aaagggaaag cacacgaagc      1560
     cgttaaatgc agactaatgc acccatcaaa cgtacccggc ataatgtcca cgttaaaaat      1620
     gctatatgga aacccggaag ttattgtgca aaatctgatc gccaagattc aatcgacacc      1680
     gcaaccgaag gcagaaaaat tggatacaat tatcgagttt tctctggcaa ttcaaaatct      1740
     ttgtgcaact attgaggcct gcaagttgga cgagtattcc tacaacatag cgcttttgaa      1800
     cgagtttgtg aataaacttc catgcgggtt taaagtagag tgggctaaac atcgtcgtaa      1860
     cttaccgaga gcaaacatac gggagtttgc ttattggtta aacgagttgg cggaaacggt      1920
     ctgtcctata gcaagcctgc agagcagcgg agtgaaaaat gcacaaggaa acaaaaattc      1980
     agcgtatcta catgcacaca gcgaagatac atttgaagat tccacagaaa atccttcaaa      2040
     atcgttcaaa tatacccggt cagatcaaac tctagaatgt gtagcatgca aaagtagttg      2100
     tccaacattg gagaaatgtc agcgcttcgt cgaacttggc tacaactcaa aatgggatgt      2160
     tgtgaaagaa tttggtctat gccgaaaatg tctacgcaag cataaaggac catgcagatc      2220
     acaacaggtg tgcgggaaga atggatgcac atacaaacac catcaactac tacacaatta      2280
     tcaacgggac caaacgaatg caaccaattc taaagaagaa gattccaagg cggttgtaca      2340
     aaattcaagc ggcgaatgta acatgcaccg acagcataaa tccactgtgt tgtttcgagt      2400
     gcttccgatc acacttcatg ctcaaaataa gtcaattaaa acttatgcat ttttagacga      2460
     cggttcttcg ctcactctta tcgatgcttc gctggcgcag gagttaaatt taacaggaag      2520
     atccgagcca ttatgcttga agtggaccgg caataatagt cggagagagg atgattcaaa      2580
     aaacataaat gttgagattt ctggaactgg gaaagcgtcg aaaacgtata ccgcagtagc      2640
     ccatacagtt gcaagtttga atctgttccg tcaaactata gatgcgcaga aattgaaggc      2700
     acagtattct catcttcaag gaataccgtt ggaatcgtac cgtaatatcc aacccaaaat      2760
     attgattggc agtgacaatg cgaaccttat cttccagctt aaaggacgtg aagggaagtt      2820
     ccaggagcca attgcgacga aaacccgact tggttggagt gtgtacggag gcactacagg      2880
     ggtcgatgct cttgttggtc atcatagtgt gcagatatgc ccttgcaaca ctcaatctga      2940
     tgaaatactc caacaagcga tatgcgaata cttcagtttt gatgcgcttg ggatttacaa      3000
     acccgagaag gttctggaat cgcatgaaaa tcaaagagct cgtgaaatac tacagcggta      3060
     acccaaacaa caagcggtcg ttacgaagta agtctgctgt ggaaattcga ctctatacat      3120
     ctaccgaata gtaaaactac ggcgttgcag cgctttcgct gcttagaagc gaggatgaaa      3180
     aaacagccgg aactagctgc agtattacga gataagattg aggactataa acggaaaggt      3240
     tatattcgaa aactgaccaa cgaagaaatc catgccagac atgagcgtgt atggtacctt      3300
     cccctatttc cagtatttaa ccccaacaaa cctggtaaag ttagagtagt ttgggacgcc      3360
     gctgccaaaa ccaatggagt gtcgctaaat tctcttttac ttaaagggcc ggacttacta      3420
     acaccgttag actacgtgtt atatcgtttc cgagaattcc gtgtaggtct cagtggtgat      3480
     gtacgagaaa tgtacttaca gatgctcatg gctgagaaag accaacattg cctgagagta      3540
     ttgtggaacg atgactcagc tggcgatcca aatacttatg taacgcaggt tatgccgttt      3600
     ggtacaaact gttcacctac ctgtgcccaa tacgtcaaaa atctcaacgc aaagaagtat      3660
     gaagagcagt atccggaagc cgcgaatgca attataaaac agcattacgt cgatgacatg      3720
     ctggtcagcg ttgagacgga agaagaagcg atcaaacttg ccaaagaggt gaaatttgta      3780
     cactcacaag cgggctttga catgcggaac tggatttcga attcgtcagc agtagtagaa      3840
     gctatgatgg aagatactcc tcaagacaaa aaccttaata ttggagcaga gctgggaacc      3900
     gaaaaggtat tgggtatgtg gtggtgcaca tctaccgata cgttcaccta cagactttct      3960
     tcaaagcatg acccagcttt gttagaaggt cttcgaaagc cgactaaacg agaaattttg      4020
     agaacgttaa tggcagtttt cgaccctctc ggattgatat ccaacgtcct catctatctg      4080
     aaagtattat ttcaagaagt ttggagatcg gggattggat gggatgatgt cataccagaa      4140
     catcttcatg aaaaatggga acaatggttg gagattcttc ctgcagtgca aaacattcgc      4200
     ataccgcgat gctaccgtct gactacacag ttgagtgcac aaaccaacat tcagttgcac      4260
     acctttgtcg atgcaagtct atctgggtat gccgcagttg tttatctacg ctttgaacaa      4320
     ggtaatactg tggagtgtgc aattgttgga gctaaaacaa gggtggctcc actcaagttt      4380
     gtatccattc cacgactgga actccaagcc gccgtcattg gagtgagatt ggcagatacc      4440
     atcacgaggg cattgtcaat caaagtgcac cagcgttgct tctggagcga ctcacgagat      4500
     gttttgtgtt ggattcgatc agaccatcgt cgctactcac aattcgttgc gtttcgtgtc      4560
     agcgaaatct tagaatcaac aacgatggca cagtggggtc ataaaggatc gaaagaaaat      4620
     gtcgccgacg aagccactaa atggcaagga ttgccagatt tatcatcaaa cagcagatgg      4680
     tttaggggtc caagtttttt atgggaaaca agtaacacct ggccgtcgaa tccattcgaa      4740
     accgacacaa cgagtgaaga acttcgagcc caaatttgtt atcaccacga gcatgtggaa      4800
     ggcttaataa aacctcagga tttttccagc tggacgcgca tgcagagaat tgtagctaca      4860
     gtgataagat ctatacataa cttacgttgt aaggcaaaca aggcacagcg tcgcattgga      4920
     ccactttctg cttatgaact tcaacaaggc gctatccatc tataccgatt ggctcaagca      4980
     gatgcattcg gcgatgaaat aagcatgcta agttcaggta cagatcgagt tactctgccg      5040
     aaggccagcg caatctacag tttcaacccg tttatcgacg caaacaaatt actcagaatg      5100
     caaggtagaa tcagtgcatg tgagtatgct tcaatggatt gcaagaaccc gattatactt      5160
     cctaaggacc atcacgtaac ttggttggtc gtgcagcatt atcacgagcg ataccatcat      5220
     cagaaccata ctacagtcat taacgaactg cggcaaagtt tcaagattcc aaaaattaga      5280
     cgactgtttc aacgcgttag aactacctgt cagaaatgta aaattcacgc tgcatctcca      5340
     cggccaccta ttatgggcga tcttccgccg gatagacttg ctgcattcgc cagaccgttt      5400
     tcctttgttg ggatagatta tttcggccct atgactgtgg cggttggccg ccgtaccgaa      5460
     aagcgatggg gtgtactgat aacgtgcctg acgatgaggg cggtgcacat tgaagttgcg      5520
     cactctctga atgcggcttc atgtgtcatg gcactgcgga atttcatggc gcggcgtggt      5580
     gtaccgatta gaattcatag tgaccgtgga acaaatttta cggcggcgaa aaaagaattg      5640
     gcggcagcga acgatgasct kakmgcgcgc tgaaggagat ggaccaagat aaagtcgtcg      5700
     cmgaaatcgt cagttcagac accgaatgga cattcctgcc ccccgcgtcc ccgcatatgg      5760
     gcggagcmtg ggaacggctc atacagacgg ttaagagkaa cctacgggca atgcaaccag      5820
     gmcgaaaccc atctgacgaa gtcctccgca ataccttagc ggaagttgag aacgtcgtca      5880
     attcacatcc actgacgtac gtaccggtmg aagattcgga ggcgccagtc cttactccga      5940
     accacttcct cttgggttca tccagtggcc tgaagccgct gaccgtattc gacgataggg      6000
     cggtggttct kmgacgagct gttgtatgtc gcaaattgag gcaaatgttt tctggcaaag      6060
     atggttacgw gattatctgc cggacataac aaggcgaaca aagtggttct acgaggtgaa      6120
     gccgattgaa ktsgacgaca tcgtggtggt agtggacccg gaactaccac gtaattgttg      6180
     gccaaaaggc agagttattt ccgtcaacac aagcaaggat ggacaggtgc gttccgcggc      6240
     agtccaaacc aaaacaggga tatacgagcg tccggctack aaattagcgg ttctagatgt      6300
     tcgacgcgaw gaatcggtaa gccaggaacc tggcctaccc cgggggac                   6348
//
ID   BEL-219_AA-LTR repbase;    DNA;    INV; 822 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-219_AA_;
KW   BEL-219_AA-I; BEL-219_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-822
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 896-896 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 822 BP; 274 A; 150 C; 141 G; 257 T; 0 other;
     tgttacgacc cctcggtcgg cgcgtcgatg tacaaacgat aggtagatca tcgattaact        60
     gtcaagatgt ggcctacaac tctaggacgg gtcgattggt catgtttgct tcaacgtcac       120
     aacaagatcg aacgagaatg aattgcaaga attgaattct gttagtgatc aatatccatt       180
     agttcgccta agtgaaattt accttcaact ctcatgaatt cgaacctaat attattcaga       240
     ttacggctaa agtggtacag attgctcaga atcattgaat tataccttat aactaatttc       300
     aaattatttc aagggtctgt cagctaaatt aggatataaa attgcaccct tacgtgtgtg       360
     tagatcttta aataccagta aatctcctct tattatatat atatatactg gtaaggcaaa       420
     caaattgttt gaaatttgtc accatattca ctacataacg ttcttagtag caaaccaatc       480
     tttatcatta tttggataac ctttatcgag ggtaacgcat tcaggattaa cttcacgtat       540
     acaggttagt ttgttataac aagatgtatg tacttgggag agatcttcat ctaacaacgt       600
     acattacaga ggaaaggatc gcgcgaaaac tctgcgaaga aaaccagacg aaaagaagaa       660
     aataaggaaa ctaaacgtaa gtcaaattct gattcattta attattactc tactaaaaca       720
     atgtattgcc atttgcagga agattttaat cctgttccaa taaactgatt aaattctcgg       780
     aaacgtttcc tttctgtacc ttctcgttga cgattgtcaa ca                          822
//
ID   BEL-21B_DTa-I repbase;    DNA;    INV; 2157 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   28-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21B_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2157
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5632-5632 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 2157 BP; 809 A; 338 C; 404 G; 594 T; 12 other;
     tggtcattcg agcctttgat tccttgcgga acaattggcc agactactct gcagttttcc        60
     cccaccagtg gtaagagact cagagatatt ctgcacctta aagattctgt caagtgctag       120
     acacttgcag ctacaggttg caaacagatt cacacgattg ttttccccca ccagaggtaa       180
     gagacaaaag tgttgaacaa aataaaagca aaaagacaaa taaagagtct tttttgtttt       240
     taagcacctt aaagattctg ttttttaaca gctacaggtt gctaaagtcg gtagggcgtt       300
     tccgaggcct taacatcgga ttaatatata gaaaaatata gtgattcata tatattaaaa       360
     ccaataagtt ggtaaggcgt gtccgtggcc aaaacagcgg atataaaaaa tataaaattt       420
     tgtgaaaagt gcattaaaaa aaaaaaaagt gcccacaaaa taacatttgc aaaaagtgcc       480
     taattgcaaa tgaaatactc ttgtattgga aaaaaaaaaa tccacaagag aaaattgcgc       540
     aaaatccaaa aatttggaaa aataagggtg aaaagtgcct acaaatgcta tmaagccaag       600
     aagctataaa gcataaaatt gaaaaatccg actaaataaa aatattatta ttaaagaaaa       660
     agtgcacaat aaataataat attaccatta gcatcgacta tggttaacaa gagcctgcaa       720
     tataaatgta aatattgtaa aagggccttg aattgaatcg caattaagcg ttcaactcca       780
     ttaatttgga ctatgggaaa atatacacca ttgggcaaat agcctgcaga tgcaatattg       840
     cattttaaca tcccgaaact gggataaata taatacatca agctaccgag aggacgatct       900
     cggcaccata acttaatttc attttggaag gaagaagact tgctggctga ccgcaggacc       960
     tggacaccaa gggaagtcgt cgccaaaatc gtcgctacaa gaacgtcgtc gacaacatct      1020
     ttgaaaaaac gctatcgtca tcaatgggct aagtcaacgt gatcaacaga taagttcgat      1080
     atgagtaact gatatagttg taaaaagcac gatgtcgatg tccgatatta gttattttag      1140
     tgcaaaggtg gccttcttag agaaagtcga gcaattaaac aaatatctcg atgagacagt      1200
     aaataatttg agtggctgca aggattccct taacataaga agaaataaga ttaactattt      1260
     agctacaaat ttgtttaatg tggtggaaca ggctagatgt tattttgaac gcagagaatt      1320
     tgaacgcatt attgatgaat tggaattcga tgttcaaaat atagtaacgg ccatagagaa      1380
     aagattccgc mstgaaggat attgtccttg ggttcttagg gaagaagagt ttcttaccct      1440
     gccagagaaa cagttttcaa attacctcga tgaattaatt tgttgtaatg aattcaaaca      1500
     aaaagagaat actttagaat caaatcaaat agattcacaa actgtattat cgagtccatt      1560
     aaaagagaaa gagttaggta gcttaacgat ttctaaagaa atagaggata aagaaataca      1620
     ctgccgtaat attccgccgg caggacctca ctttgaaggt gaggttattt ttagttcacc      1680
     atccgtgtta cttgaagtaa atgacgttct tacaaccgtt catttagtag aagaagagtc      1740
     aatagactta gaattaataa atggaagtcc tatgacagtt aggatttgca acgcatactt      1800
     tcgggccaag ttatataatt acaaatttgt gaagcaaagt agkwkctatt taagaatgat      1860
     ttggtgccca wtaaagctak gtctgtttaa ttatacggta aatgttaaac ggttgaagaa      1920
     tgaaaaagag tacatgaaaa ggtatcatgt taaaattaaa gatttaataw wtaawgattt      1980
     tatamatttg gtaataaaat ccaagaccgt tgcagggtgt ctaaacatat aagttaaaaa      2040
     gcagatacaa tatatcgaat taaatataca gtccactaat tttatatttg cattgttaac      2100
     gaaaagaatt tatgtaattg ataacctcta caccgcatct tgccgccctt ggcagaa         2157
//
ID   BEL-21_AA-I repbase;    DNA;    INV; 6304 BP.
XX
AC   supercont1.128;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AA_;
KW   BEL-21_AA-LTR; BEL-21_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6304
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.128; Positions  465268  471571.
XX
CC   Positions [5330-5893] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           896..6304
FT                 /product="BEL-21_AA-I_1p"
FT                 /translation="MVGKHTPSRTVIPREVHSLTIREPFQQYVTSSRPLYH
FT                 PQSFSGIRPPYSCPPMFQRIALPSTERGNPADQTYQGQPPSWSTPVQYGSM
FT                 PNPGLNSHPGISPAAEPALRYRESRPEHVASVNASNHSSLFNPSEVRIVPD
FT                 AIPEIERPTTLSSQQIAARQVVGRDLPSFNGHPADWPMFVSSFEQSTASCG
FT                 YSNAENLVRLQRSLTGHALEAVRSRLLLPANVPHVIETLRTLYGRPELLIR
FT                 SLHEKIRRTPGPKHDRPETILEFGLAVQNFVDHLLAAQQEEHLSNPMLLQE
FT                 LVEKLPGSMRMDWATFKCQRPRATVATFGEFMSNLVKAASEVSFQLPELFQ
FT                 GLNDGKQQRVKERARIQTHLALVPPSIKPTNISARKISKPCPICDHEGHRV
FT                 AECSTFKQFNVDERWKAVHDKGLCRTCLNNHGKWPCKSWQGCRNEGCQLKH
FT                 HSLLHTPSVPPTTSHSVNVSMSQLSSDDHQTLFRILPVVLYGKDKCVTVFA
FT                 FIDEGSQITMLEDKVAKELGVAGPRRPLTLQWTGNVKRSELGSQEVDMQIA
FT                 GKNSDVRYDLLQARTVSCLLLPTQSMNYRALCARYPHLKGLPVEDQDRVQP
FT                 KLLIGLDNLRLGIPLKLREGGIYDPIAAKCRLGWGIYGCTSKIPVTRVTVN
FT                 FHTTAEPSPDDLLNVQLRDYFMLDNCGAVSHTKKLESEEDKRATRLLEETT
FT                 RRTTVGFETGLLWKSDMREFPDTYPMALRRMKALENKLQSNPSMMQRVREQ
FT                 ISEFERKGYIRKVSATEQSALDHRKTWFLPLGVVVNPKKPEKIRLIWDAAA
FT                 KVGGVSFNSYLLKGPDLLTSLPRVLSGFRLFPVAISGDIREMFLQIRLQAS
FT                 DRNAQMFMFRNSSRDPVQIYAVDVTMFGSTCSPSSAQFVKNLNAEQYSSEY
FT                 PRAATAIKEHHYVDDYLDSFRTVEEAVQTLNDVKLVHARAGFEIRNFLSNK
FT                 SEVLKRTGEIEPDSSKEFALVRAETTESVLGMKWIPAEDVFTYTFAMRSDL
FT                 RPVLDDKHVPTKREVLKVVMSLFDPLGFVAFFLVHGKVLMQDVWAAGIDWD
FT                 EKISEELYFRWRQWTYYFPQLDNLRIPRCYFQSPFPANLDRLELHVFVDAS
FT                 DSAYACVAYYRLETANGVQVALISAKTKVAPLKVLSIPRLELKAAILGVRL
FT                 LENIHGYHTYPISRRILWSDSSTVLAWIRAEHRKYNKFVAVRIGEILSATE
FT                 IQEWRWVPSGMNTADSATKWKNIPDLSFDSPWFRGPVFLRQSEEHWPQQKN
FT                 ILTTTEELRSTNVHFSTRPLIDASRFSKWAKLLHTMAFVQRFVQNLRRKRK
FT                 GLTLQLGAFQQDDLKNAEEMLWKVAQAEAFSEEIAALVDSTGYPDARHRRV
FT                 PKSSPIYKNNPFLDERGVLRMRGRIGAATFVPDEAKYPTILPRQHSITFLL
FT                 TDWYHRRFRHANRETVTNEMRQRFEIAKLRALIQKVMKNCMMCRVMKAAPN
FT                 PPVMAPLPAIRLQPLVRPFTYVGLDYFGPILVKVGRRQAKRWVALFTCLTI
FT                 RAVHLEVVHSLSTESCIMAVRRFIARRGAPAEFYTDNGTCFQGANKQMERE
FT                 IMEARSNALAATFTSTGTQWRFIPPAAPHMGGAWERLVRSVKAALASVAAA
FT                 SRTPDDEVLETVLLEAEMLINTRPLTYIPLESADQEALTPNHFILGSSNGD
FT                 KIAPFAPVDNPSVLRSSWRLAQSISQDFWARWLKEYLPVITRQAKWFEEKP
FT                 DIAIGDLVMVVNGSARNQWVRGLVEAVIPGRDGRVRQAFIRTASGVLRRPA
FT                 VKLAVLDVRGNGEPQPGVLKNRKLNQVSREGG"
XX
SQ   Sequence 6304 BP; 1748 A; 1470 C; 1591 G; 1495 T; 0 other;
     ttcttttaga attttgtacg tggataatcg aaatgatagg acatcacgat caatcgatgt        60
     atcagtgcaa gacgtgccac ggggcggatt cggtggacgc tcacatgttc acctgtgacc       120
     agtgtcgcca atgggagcac tttcagtgcg cagggctcaa cgaagcggtt caaaatcgcc       180
     cattcatctg taagctgtgc agaatggcaa ccactggcac ccagcgagtg cttcggtcaa       240
     gaactaaagg tattctcctg actaacccat ccgtggcaga cgccacttct aataagagcg       300
     ggaaggtatc gtccgtacac agttactctt cgcggtcgtc agtcgtaaga gcgcggttgg       360
     agctagccga ggaggaagct agaatgagac agaaggagct tgaggaggag gaagaactca       420
     agaaacttga gcttgaagaa gagaagaagc agttggaaga gaggaagaga ttattagaag       480
     aagaagccca tctgcggaaa cgagcattgg aagcaaatcg ggagcgtctg gccaagcagc       540
     aatcgatccg ccgagaatca ttagagaaaa ggaacgaaat tctcttgcaa atatccgaac       600
     gcggaagcgt gttggagtca acaactagtt ccgttgagaa ggtttccaag tggttaacag       660
     ctcatcaacc ggaagggacg tccgaaggga atgatacggg ggtacaaaga ggccctaatc       720
     ctttggccca tgtcggagta cagagagctc cgttgaatac cgctgggaaa cgttaccaac       780
     agagatagtt tcaccaaaaa cgtacgatag caccccgcaa cccacgcgtc cagaaacaga       840
     tgatgtgcgg ccttcagaag cgcttcgatc gggaaatcat gttccgacag cacccatggt       900
     tggaaagcac accccttcga gaacagtcat tcctcgggaa gttcactcac tgactattag       960
     ggagcctttc caacagtacg tcacatcatc acgccccttg tatcatccac aatcgttctc      1020
     tggtattaga ccaccgtatt cctgtccacc gatgtttcaa cgcattgctt tgccatctac      1080
     cgagcgaggt aatcctgccg accaaacgta tcaagggcaa ccaccatcgt ggagtacacc      1140
     agtccaatat ggttcaatgc cgaatcctgg attaaactca catcctggca ttagtccggc      1200
     agcagagcca gctctccgat accgagagtc tcgtccagaa catgtcgctt cagtgaatgc      1260
     atccaaccat agttcactct tcaatccttc cgaagtgcgt atagttcctg atgcaatacc      1320
     ggagattgag aggcctacca ctcttagctc acaacaaata gctgctcggc aagtcgtcgg      1380
     cagagatctg ccttcgttca atggacaccc tgctgactgg ccaatgtttg tatccagctt      1440
     tgaacaatca actgcttcct gtggatattc aaacgctgaa aatctggtgc gccttcaacg      1500
     aagcctcaca ggtcatgctc ttgaagcagt gcgaagcagg cttttgctcc ctgccaatgt      1560
     accacacgtc attgaaacgc tacgaaccct ctatggtcgc ccagagctat taattcgttc      1620
     gcttcatgaa aagataagga gaacccccgg tcccaaacac gataggccgg aaacgattct      1680
     cgaattcggc ttggcagttc aaaatttcgt tgatcacctg ctagcggcac aacaagagga      1740
     acatctttca aacccgatgt tattgcaaga actggtagag aagttgccag ggtccatgag      1800
     gatggactgg gctacgttta aatgccaacg accaagggcc accgtcgcaa catttggaga      1860
     gttcatgtca aacttagtga aggcggccag tgaggtcagt ttccagctcc cagagttatt      1920
     tcagggctta aacgacggaa agcaacagcg tgtaaaggaa agagccagaa tacagactca      1980
     tttagccttg gtacctccat ctattaaacc aaccaacatt agtgcacgta aaatttcgaa      2040
     gccgtgcccg atttgtgatc acgagggaca cagagttgca gaatgttcga cattcaagca      2100
     gttcaatgtg gatgagcggt ggaaggcggt gcacgacaaa ggcttgtgcc gaacctgctt      2160
     gaataatcac ggaaagtggc cttgcaagtc gtggcaagga tgtaggaacg aaggatgcca      2220
     actgaaacat cattcacttc ttcatacacc ttcagttcca cccactacgt cgcattctgt      2280
     gaacgtatcg atgagtcagc tatcttctga tgatcatcaa acattgtttc gaattttgcc      2340
     ggtcgttctt tatggaaaag ataaatgtgt aactgtcttc gctttcatcg acgaaggatc      2400
     gcaaatcacg atgttggaag acaaagtagc aaaggagctt ggcgttgctg gtccaagaag      2460
     gccactcacc cttcaatgga cgggtaatgt gaagcgtagt gaattaggat ctcaggaggt      2520
     ggacatgcaa atagcaggga agaatagtga cgtacgctat gatctacttc aggcgcgtac      2580
     ggtaagctgc ttgctgttgc caacccagag catgaattat cgcgcactgt gtgcgcgtta      2640
     cccacatctc aaaggcctgc cagtggaaga tcaggatcgt gttcaaccaa aactgttgat      2700
     aggactagat aatctgcgcc taggaatacc actgaagttg cgtgaaggag gaatatacga      2760
     tccaatcgct gcaaaatgtc gtttggggtg ggggatttac ggatgcactt ctaaaatccc      2820
     tgtaacgaga gttacagtca atttccacac caccgcagag ccgagtcctg atgaccttct      2880
     taatgtacag ttacgagatt atttcatgct ggataactgc ggagcagttt ctcataccaa      2940
     gaagctagaa tcagaagaag ataagagggc aacacggttg cttgaggaga cgacacggcg      3000
     aacaactgtt gggttcgaaa caggccttct atggaaatct gatatgcgag agtttccaga      3060
     cacgtaccca atggctctgc gtcgaatgaa agcgttagag aacaagcttc aaagtaatcc      3120
     atccatgatg cagcgagtac gggagcaaat cagtgagttc gagagaaagg gctacattcg      3180
     caaagttagt gcaactgagc aatcggcatt agatcacagg aagacttggt ttcttccctt      3240
     aggagtcgtc gtaaatccaa agaaacccga aaagataagg cttatttggg atgcagccgc      3300
     gaaagttgga ggagtatctt tcaattcata tttactgaag ggcccggatt tgcttacatc      3360
     tttgcctcgg gttttaagtg ggtttcgcct ttttccggtg gctatttccg gagatataag      3420
     ggaaatgttt ttgcaaataa gactgcaagc gagtgatcgg aacgcgcaaa tgtttatgtt      3480
     ccgcaacagt tctcgagatc cagtgcaaat ctacgccgtt gatgtaacaa tgttcggatc      3540
     gacctgctct ccatcttcgg ctcagtttgt caaaaacttg aatgccgaac aatattcctc      3600
     agaatacccg cgggcagcaa cagctattaa agaacaccat tacgtggatg attatttgga      3660
     cagcttcagg acggtggaag aggcagtcca aaccttgaat gatgtcaagc ttgttcacgc      3720
     cagggctgga ttcgaaatcc gaaactttct ttcgaacaag agcgaagttc ttaagcgaac      3780
     tggggagatc gaaccagatt cgtccaaaga attcgccctc gtacgagcag agaccacgga      3840
     gtcagtgttg ggaatgaaat ggatccccgc agaggacgtt ttcacttaca cgtttgccat      3900
     gcgaagtgat ctgaggccag ttcttgacga taagcatgtc ccaacaaaac gagaagttct      3960
     aaaggtagtc atgagtcttt tcgatccgct gggcttcgtg gcatttttct tggtgcatgg      4020
     gaaggtgttg atgcaagatg tttgggctgc tggcatagac tgggacgaga aaatcagcga      4080
     agaactctac ttccgttggc gtcaatggac atactatttt ccgcagttgg ataatctgcg      4140
     tattccacgg tgctattttc agtctccatt tcccgcgaac ttagatcgac tcgagctcca      4200
     tgtatttgtt gacgccagcg actctgcata cgcgtgcgtc gcttactatc gacttgaaac      4260
     agcaaatggg gtgcaagtgg cgttgatcag cgctaaaacc aaggtggctc cgttgaaagt      4320
     gttgtcaatc ccacgtcttg aactaaaagc tgctattcta ggagttcgtt tattggaaaa      4380
     catccatggc tatcacacat atcctatcag tcgtaggatt ctctggagtg actccagcac      4440
     tgtgctggct tggatacgag ccgagcaccg aaaatataat aaatttgtcg ccgtacgaat      4500
     tggtgagatt ctttcggcta ctgaaattca agagtggaga tgggttccat ccggtatgaa      4560
     tacagctgac tctgccacca agtggaaaaa cattccagat ctttcgtttg acagtccgtg      4620
     gtttcgcgga cccgtttttc tacgtcagtc agaagaacat tggccgcaac aaaagaatat      4680
     tcttactaca actgaagaac ttcgatccac caacgttcac ttttcgacgc gtccattgat      4740
     cgatgcatcg cgtttcagta aatgggcaaa actattacat actatggcgt ttgtacaacg      4800
     atttgtccaa aatcttcggc gtaagcgtaa aggcttgaca ttgcaattgg gtgctttcca      4860
     gcaggacgat ctaaaaaatg ccgaagagat gctatggaaa gtggcacaag cggaagcgtt      4920
     ttccgaagaa atcgccgctc tcgtagactc cacgggatat cccgatgcgc gtcacaggcg      4980
     cgttccaaaa tccagtccaa tttataaaaa taatcccttt cttgatgaaa ggggagtact      5040
     aaggatgcgt ggtaggatcg gagctgccac atttgtgccg gacgaagcta agtacccaac      5100
     aattctacca cgacaacatt ccattacatt tcttcttaca gactggtacc atcgccgatt      5160
     ccgacacgcc aaccgagaaa ccgtcacgaa tgaaatgcgc caacggtttg aaatcgccaa      5220
     attacgagcc ttgatacaaa aggtaatgaa gaactgtatg atgtgtagag tgatgaaagc      5280
     cgcccccaat cctcctgtga tggccccgct tcctgcaata cgactgcaac cattagttcg      5340
     tccatttacg tacgtcgggc tggattattt cggacctatt ttggttaaag tcggccgaag      5400
     acaggcaaaa agatgggtag ctctctttac ctgccttacg atccgtgctg tgcacttgga      5460
     ggtcgtacac agcctgtcca ctgaatcatg tataatggca gtacgccgtt tcattgcgcg      5520
     ccgtggtgcg cctgcggagt tctataccga taatgggacc tgcttccagg gagcaaataa      5580
     gcaaatggag agagagatta tggaagctcg aagcaatgca ctagctgcta catttacgag      5640
     cacaggaaca caatggcgtt tcatccctcc agccgctcct cacatggggg gtgcttggga      5700
     gcgccttgtc cgatcagtca aggcagcatt ggcatcagtg gcggcagcat ctcgcacgcc      5760
     agacgacgag gttctagaaa ccgtcctgct cgaagcggag atgctgatca acactcggcc      5820
     ccttacgtac atccctctag aatcggctga tcaggaagcg ctgaccccaa atcattttat      5880
     tttggggtca tctaatggtg ataaaatcgc gccgtttgca ccggtagata atccgtcggt      5940
     gctaaggagc agttggaggt tagcacagtc aatatcgcag gatttctggg caagatggtt      6000
     gaaggagtac ctaccagtaa taactcgtca ggcgaaatgg tttgaagaaa aaccggatat      6060
     agcgataggc gatctggtga tggttgtgaa cggatcggcg aggaatcagt gggtgagagg      6120
     acttgtggaa gctgtcatac ccggacggga tggaagagtt cgccaagcgt tcatccggac      6180
     agcatcagga gttttgcggc gaccagcagt aaagctggca gtactcgacg tgcgagggaa      6240
     tggtgaaccc caaccaggag ttctcaagaa ccggaagtta aaccaggttt cacgggaggg      6300
     ggga                                                                   6304
//
ID   BEL-21_AA-LTR repbase;    DNA;    INV; 690 BP.
XX
AC   supercont1.128;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AA_;
KW   BEL-21_AA-I; BEL-21_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-690
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.128; Positions  464578  465267.
XX
SQ   Sequence 690 BP; 261 A; 119 C; 123 G; 187 T; 0 other;
     tgtcgcgacg agaccccccg ttgcagctca actgtggccg gtcaatgtgg ggatcacaac        60
     tgtggttgac tgaacgatca tcaccacaaa gggagaatga taaaaacaat gaccaagcaa       120
     ataagtctaa atacgtgtcc aaaaagtgaa catccaactt ataaaattaa gaaaaattag       180
     gatctaaatt aaagctaaaa tttgaattta tatctaaata ctttcacgag taaatgcatt       240
     gaatttagta aatagaattg cagtattgag gcggataaca ctgaattact taagctaata       300
     gtacggagag gtatgacatg cagtttttat gatcttatgc tagaggcctt acatgaaatt       360
     atacttcaaa tctaggtttt acgcgatcat cctaatctaa acgcatatta aacactaaac       420
     ggtactagta aacaccaatc aaaccgtaag tagaggaatc gaagaagttt ttttagttaa       480
     ttcaacatat cttatacata cagagtaatc caactatcaa cagcgtcgag tgtgataaga       540
     tcctagattt cgaaggtcac caaaattgta agtagaagag taaggcaatt atgactatgg       600
     agaaattaaa actgaattca tttttagcta aaagcttacc acaataaaac ctgaggtttg       660
     ctttacgtga tttgaaagac ccccacaaca                                        690
//
ID   BEL-21_AG-I repbase;    DNA;    INV; 3339 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   BEL-21_AG-I.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3339
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1433-1433 (2010).
XX
DR   [1] (Consensus)
XX
CC   The three sequences in this family have a p-distance of 0,0033
CC   sd= 0,00077, presenting LTRs of 227 nts that are identical within
CC   each element. The consensus sequence presents an ORF of 927 aa
CC   that has no conserved domains for known proteins.  The LTR finder
CC   program detected a PBS for Asparagine and a PPT signal.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..2878
FT                 /product="BEL-21_AG-I_1p"
FT                 /translation="WNGKINQRKMRRTLRVEQNLPASPETPQESGNVSGGP
FT                 RYDPSSPGTSSTVTTEGSTPRSDATTTNVAVLCKEGQSKGISSPFHALNHG
FT                 ANQGRDDIRESRRRRLQEIEHEMQMLRDAEDENGSAAIAEHPNHGGTGGTH
FT                 YPEFAGWVKSFEESLRRIYPAGKALTQGQIPGGNDLGQRAAAEQAQLPQPS
FT                 PAIASTYATLPSQRMHPHATQTLPHATHSHSAHTIQTHPTYTSHTHSAHTI
FT                 LPQHEYVQPHFNTSTLSQSQIAARQPVPRDLPIFSGEPEAWSFFIATYNRT
FT                 NTACGYTDDENIGRLQYALRGAAFEAVGHLLSFPDGLNEVMATLKARFGRP
FT                 DLIVESMTEKIRKMAPPKIERLSTVVEFGYAVKRLVGTMTASGLRGYMYDV
FT                 ALLKELVRKLPPVLCIDWARTRSKLSEVTLLEFGKWVGDLAEDLCGVVDVM
FT                 SIMDNSDSTHQQPEPPTHHSRTQPQRFQPHRAPPAQLDRRPPIRTGRVHLA
FT                 YCNATVLQDENLGDPSSSQNTPELLTVCPLCGRDCPTLVQCEQFQRTTVAA
FT                 RRSFVGERRICRKCLGYHRGGCSVRAPCAVNGCNRQHHELLHVNDQTPASP
FT                 HQRDHLNGSGKVVYTGVANVLTHSGPKDSSLLKYVPVTLHGPRGRIDTFAF
FT                 LDDGSTSTFMEHGLAQELGVTGTPYPLCLQWTGDVTREEQDSVRLSVRISG
FT                 RNMSHAIYKLSEVHTVKELALPEQSVNVAQLTARYTHLRDLQFESYASAVP
FT                 RILIGIDNCNITRTLKTVDASCNEPVASKTRLGWVVYGPCSVASAKPSPSN
FT                 RSFSGRPFHDLSCNSASDKAVRPLRPRDDERALAILERETNGQRYEMGPLW
FT                 RYDSVNLPYNKKAFKRDGFLKQKMAKYSKLANDVNRTNVAEFLPTLHHRTE
FT                 RSEPVRPTEIGDIVVVACNNS"
XX
SQ   Sequence 3339 BP; 924 A; 861 C; 891 G; 663 T; 0 other;
     tttcaaaaaa ttagcattcg cgcgaaaaag ccaataaagt tgatcgaaaa ctcgtttcgc        60
     agagcagaaa gcacagtaag tcgcgcgcgc aagtgatata tagtggaacg ggaaaataaa       120
     ccaacgtaaa atgcgtcgta cgcttcgggt ggagcaaaac ctaccagcga gtccggaaac       180
     gccgcaggaa agcggtaacg tctctggcgg gcccaggtac gatccatcct ccccgggaac       240
     atcgagcact gtaacgacgg aaggaagcac cccgaggagc gatgccacca caacgaacgt       300
     tgcggtactt tgcaaagagg ggcagagtaa ggggataagt tcaccgttcc acgcattaaa       360
     ccacggtgcg aaccagggcc gcgatgacat tcgcgaatcg cgaagacgac gattgcagga       420
     gattgagcac gagatgcaga tgctacggga tgcagaagac gaaaatggct cggcggccat       480
     cgctgagcat cccaaccacg gcggcactgg ggggacacat tatccggagt ttgctgggtg       540
     ggtgaagagt ttcgaggaat ccttgcgtcg aatatacccg gcgggaaaag cccttacgca       600
     aggccaaatt ccagggggca acgacctcgg gcaacgcgcc gctgctgagc aagcccaact       660
     ccctcaaccg agccccgcga ttgcgtcgac ctacgctaca ctaccgtcac aaaggatgca       720
     tcctcacgca acacaaactc ttcctcacgc gacacattct cactcagcgc acactataca       780
     gacacacccg acgtacactt cgcatacaca ttcggctcac acgatactac cacaacacga       840
     atatgtgcaa ccacatttca acaccagcac actgagtcag agccagatag ctgctcgtca       900
     accggtgccc cgggaccttc cgatcttttc cggggaacca gaagcgtggt cgtttttcat       960
     agccacgtat aaccgcacta acactgcatg tggttacacc gatgacgaaa acattggccg      1020
     tctacaatat gcgttgagag gagcggcgtt cgaagcggta ggccaccttt tgtccttccc      1080
     ggacgggttg aatgaggtga tggcgactct aaaggcgcgt ttcggcagac cagatctgat      1140
     tgtggagtcc atgaccgaga agatcagaaa aatggcacca ccgaagattg aaaggctgtc      1200
     aacggtcgta gagtttggat atgcggtgaa gcggttggta ggaacgatga cggcctccgg      1260
     gttacgaggg tacatgtacg acgtggcgtt actcaaggag ttagtcagga aactaccccc      1320
     cgtcctatgc atcgactggg cgagaacgag gagtaaactt tcggaagtga cgcttttgga      1380
     gtttggaaaa tgggttggtg acttagcaga agatctctgt ggtgttgtcg acgtgatgtc      1440
     catcatggac aatagcgact caactcatca acaaccagaa cccccaactc atcacagccg      1500
     cacccagcct cagcggtttc aaccccatcg tgccccgcca gcgcaactcg atcgacggcc      1560
     accgatccgt actgggcggg ttcatctagc ctactgcaac gcaacggtat tgcaggatga      1620
     gaatcttggt gatccatctt catcgcaaaa tacaccagaa ttgctgactg tctgtccctt      1680
     gtgcggcagg gattgtccca ctctggtcca gtgtgagcag ttccaaagga caacggttgc      1740
     cgccagaaga tcgtttgtag gtgaacgcag gatatgccgg aaatgcctcg gataccatag      1800
     aggtggatgc agcgtaagag caccgtgcgc ggtgaacgga tgcaacagac aacaccatga      1860
     gctgctccac gtaaatgacc agacaccagc cagccctcac cagcgcgatc atctaaatgg      1920
     ctcaggtaag gtcgtgtaca ctggtgtcgc taacgttctt acccattcag gaccgaaaga      1980
     ctcttcgctt ttaaaatacg tacccgttac gctgcacggg cccagggggc gaatagatac      2040
     gttcgccttt ttagatgacg gctctacttc cacgtttatg gagcacggac tagcacagga      2100
     gcttggagtt acagggacac cgtacccgtt gtgtctacaa tggacgggag acgtgacaag      2160
     agaagaacaa gactccgtaa ggctatcggt gcgcatatcg ggtagaaaca tgtcgcatgc      2220
     gatatacaaa ctatcagaag tacacacggt caaagagctt gcccttccgg aacaatctgt      2280
     aaacgtagca caactgactg cacgctatac tcatctgaga gatctccagt tcgaatccta      2340
     cgcttccgcc gtgcctcgca tcctcatagg catagacaac tgcaacataa cgcgaactct      2400
     gaagaccgtg gatgcaagct gcaacgaacc ggtcgcttcg aaaacccgcc ttggatgggt      2460
     tgtctatggg ccttgctcgg ttgcgagtgc aaagccgagt ccttcaaacc ggtccttctc      2520
     gggccgcccg tttcacgacc tctcttgtaa ctccgcgtcc gacaaagcag tgcggccgtt      2580
     gcggcctagg gacgacgaaa gagcgttggc gatattggag cgggaaacga acggacagcg      2640
     atacgaaatg ggacctttgt ggcggtacga cagcgtcaat ttgccctaca acaaaaaggc      2700
     gttcaagcgt gatgggtttc taaaacagaa gatggcaaaa tattcgaagt tagcaaacga      2760
     tgtgaataga acaaatgtag cagagttttt acctacactt caccacagaa ccgagcggtc      2820
     cgaaccggtg cggccgacag aaataggcga tatagttgta gtggcgtgta acaattccta      2880
     ggaattgttg gcctaaggga ggaatcgtgg tagtaaaccc tgataggaat ggacaagtta      2940
     gtcaagccac cgtcaaaacg gcccattaaa cgtacgatag gtctacgcac ggatgtgcaa      3000
     tttccttaga gtaattgggg taaaaccgcg tggttacgac gcaacagatc gaacagtgag      3060
     cagacagtaa acaaaccaat gcacatacac atacacgcaa aacacctgac agataatagg      3120
     aagtgtagcc acggttgata gtgtcgcagg ctaggatggc gaaaaaagag gttgcaccat      3180
     ggttaagcgg gattgacgtt tttgtgtaac gggctataga gcttaagcgg gttacacgat      3240
     cagcgtttac gggctataag ctcaagcggg ttacacgttc agcgtttacg ggctactaac      3300
     aaattcaacc gcctcaaccg tggtacactg gggggacaa                             3339
//
ID   BEL-21_AG-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   BEL-21_AG-LTR.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-227
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1434-1434 (2010).
XX
DR   [1] (Consensus)
XX
CC   LTR belonging to Bel21_AG.
XX
SQ   Sequence 227 BP; 76 A; 39 C; 54 G; 58 T; 0 other;
     tgttggaaac tcgtgagtgc ccaacagtct gtcaggtgac aacgctagag aagagagtga        60
     gagggaggat aaaaacggta aattaggaga taaggagaag ggttggtccg ctcctaacca       120
     gttagttgaa attcgacaat cggtacaagt ggactaattt tttgatttaa cctcatacca       180
     cagtaaataa agtgttttct ctaaaaaatc caccgcgttt ttcaaca                     227
//
ID   BEL-21_AnFu-I repbase;    DNA;    INV; 5744 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5744
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 672-672 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           461..5698
FT                 /product="BEL-21_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MATTDKKIATCVRKRQSLLNVLASLESFRNTFDASVD
FT                 ALEIPVRIQVLDQCKSDFDEIMAKIEELDETKTNNEEHMQEQTNFCARFCK
FT                 LKGFLLHQMSNDTPMMNSSALATTICSGGFGGNVHLRLPKVELPSFDGDVT
FT                 RWLAFRDRFNAMIHGSTEIPAVMKLQYLLSSLKGEAAAIFEHTEVTADNYA
FT                 ITWSTLLKRYDNTKQLVRDYYMALHHLGSMQSGRVEELSRLADEFVRHVKG
FT                 LNRLGEPTEKWDTPLTNIFLLKVDEATRIAWEKFSSQDETYSYERLLLFIE
FT                 ERIRILRSSSQFPIKVAGDKVKVAGTGRRGGINPLVKSQATFVSKPTCKPG
FT                 TSAISCLICGAHHTCRTCPVLENMSVQERRDQVMKHKLCFNCLTPGHGAFT
FT                 CHSKMSCSVCKRRHHSLLCNDSDASRKGTGGQAEVTTTASYPARESSNDIW
FT                 RNRESKVVLLSTAVINVVDRRGELVPARALIDSGSQANFMSERLAQQLGLR
FT                 RNAANVPIHGIGESATRIRHRMTATVQSTKSGEAWCLDFLILKKVTIDLPS
FT                 TTVDISKWKFPSYVQLADPKFNEEGGIDLLIGAEVFLDLLLEGSYVMQPSM
FT                 GLTLRNTKLGWIVSGACYSEPGRTVCTMVQADESEDIKSLMESFFKIEEVT
FT                 GESLLSKEEQECEELYRNTTTRDSDGKYVVRLPFKKLPADALGNSLDTAKR
FT                 RFIALEKRIRRDVEIEAQYKSFLKEYEDLGHMRKIDVANEELAYYLPHHPV
FT                 LKLESTTTKCRVVFDASCRTSSGASLNDILNIGPTIQEDLVSILLRFRTYA
FT                 VALVGDIEKMYRQVRVHEDDRKWQRILWRSNTSEEIKVFELNTVTYGTSSA
FT                 PYLAIRTLNQTFEDHGGEYPLAALCKRDFYVDDLISGAETEEAARETRDQL
FT                 DNLLKKGGFSLRKWASNKPAVVSDIPELARAITTDCVLTSSLSPISTLGLY
FT                 WDPILDQLKVKVRSMNSTNPSTKCSVLSDIARIYDPLGFLDPVKMKAKIFM
FT                 QQIWTLRSPDGSVWRWDMGLPEGMQRDWARFVNQLDCLNNAAFPRLVYPAD
FT                 RNDTQLHIFCDASEQGYGACAYLRCEKNESYITSRLLTSKSKVAPLSQKTT
FT                 IARLELCAAVLGSCLYQRIIKALRSPIQCFMWTDSMTVGHWLSGAPNRWKT
FT                 FVANRVSKVQRATEECKWRHVPGTQNPADLVSRGCMPEEFMNHGVWWIGPD
FT                 WLRESQDKWPADVCFGKCLNVPEQKTISLVTTDKQQEEHELFSRYSSWSKL
FT                 RRIIGVWMRYFGMLRKEGEAGNKWISSNNLYAADRALCRLAQRDCFSVELK
FT                 ALKNHQQVSKKSPMKWFKPVLCEDGLIRVGGRLGNSAESHNAKHPIIIPGQ
FT                 HTLARLIVKYYHEQMLHAGPQLVLSTIRQHYWIVGGRNLVRRVVHECFTCF
FT                 RCKPVPVVQPMAELPASRVTEARPFAICGVDYCGPVYVKGKHRRAVPTKTY
FT                 IAIFVCFVTRAVHVELVSDLSTSAFLAALRRFVGRRGLVAEIYSDNGTNFK
FT                 GASNELNEVFMLLKSDQHQEAIQLWTASQGIQWKFIPPRAPHFGGLWEAAV
FT                 KSLKHHLLRVLGTTSFTFEDLATLLIEIESCLNSRPITPMSDDPLDIDVLT
FT                 PGHFLIGAHMQQIPALELGEIPVNRLDHWRSVQQRMQQFWKRWHTEYLQQL
FT                 QARAKWLDPATAIEPGAMVLIGEENTPPTRWPRGRVLEVTTGKDGVVRVVK
FT                 LRTANAKNVVRPVSKLYLLPKATQNP"
XX
SQ   Sequence 5744 BP; 1672 A; 1096 C; 1516 G; 1460 T; 0 other;
     tttggtcctt cgaaccggat cgcggagtca ttagtgaaag gcagaattat tgaaaggtca        60
     ataagaacag aaagtatctg ttatatttat cgaagcgaaa gtggcgtgtg taaaaattgt       120
     gtgcgtgcat acgtttctgt gtgtgctgct ggttgaacac tgatcgtcag cgagcgagaa       180
     cgattaccgc atggttcgtg cgtacagtgc gtgacgcgta aagacatcgt atcaaatatt       240
     gcatcggttg taattaacgt ttgggcaatt gcgaacttta gtgattcacg aggtgcaaca       300
     atcgctggac taaagagaag cgcggaaccg ccatcgcgag acgaagtgac gccacgagaa       360
     accgccatcg cgagacgaag tgacgccacg aggaaccgcc atcgcgaaaa taagtaaaac       420
     cacgaggaat cgtcatcttt gatttgtgag ttagatcgta atggcgacca cggacaagaa       480
     aattgcgacg tgtgtgcgga aaaggcaatc gttattaaat gtgttggcaa gccttgaatc       540
     ttttcgcaat acgttcgatg cgtcggtgga cgcgttagag attccagtgc gaatacaggt       600
     gcttgatcag tgcaagagtg attttgatga gatcatggcg aaaatagaag agttggacga       660
     gacgaaaacg aacaatgagg agcacatgca agagcaaact aatttttgtg cgcgtttttg       720
     taagctgaaa ggatttctgc ttcatcagat gtccaacgat actcccatga tgaacagttc       780
     agcattggct acgaccatct gtagtggtgg atttggtggt aatgtgcatc tacgattacc       840
     gaaggtggag ctaccatctt tcgacggtga cgtaacgcgt tggctggcat tccgagatcg       900
     tttcaacgca atgatacacg gatcgacgga aattcctgca gtgatgaagc tgcagtatct       960
     actgtcctcg ttgaaaggag aagctgcagc tatattcgag cacacggagg taaccgctga      1020
     taattatgcc atcacttgga gcactctgct gaagcggtac gacaatacca agcaattggt      1080
     tcgtgactat tatatggcgc tacaccatct tggatcgatg cagtcaggac gagtagaaga      1140
     actatcccgt ttagccgatg agtttgttcg ccacgtcaag ggtcttaaca gattgggtga      1200
     gccaacggaa aagtgggata cgccattaac gaatatcttt ttattgaagg ttgatgaagc      1260
     tactcgtatt gcatgggaga agttctcttc ccaagatgaa acgtactcat atgaaagact      1320
     gttgctgttt atagaggagc gtatacggat tcttcgatcg tctagccagt ttccaatcaa      1380
     ggtggccgga gataaagtca aggtggccgg aactggacgt cgaggaggaa tcaatccgct      1440
     agtaaagtcg caagcaacat tcgtaagcaa gcctacatgt aaaccaggta cgtcagccat      1500
     ttcttgtttg atttgcggag ctcatcacac atgtcgcact tgtccagtgt tggaaaacat      1560
     gtcagttcaa gaacgtaggg accaggttat gaagcataag ctttgcttca actgcttgac      1620
     tcctggacat ggagctttca catgccattc taagatgtcg tgttcagttt gtaagagaag      1680
     acatcattca ttgttgtgca acgatagtga cgcgtcgcgc aaaggaacgg gtggccaagc      1740
     tgaagttaca acaactgcgt catatcctgc tagggaaagt agcaacgata tctggagaaa      1800
     tcgagaatcg aaagtggtac ttttgtcgac agctgtcata aatgtggtag atcgaagagg      1860
     ggaattggta ccggcacgtg cgttgataga tagtggatct caagcgaatt ttatgtcgga      1920
     gagattagcc caacagttag gattacgacg caacgcagcg aatgtaccga ttcatggcat      1980
     cggagaatca gccacaagaa tacgtcatcg tatgacagcg acagtacagt caaccaagtc      2040
     tggtgaggca tggtgtttgg attttcttat actgaagaaa gtgacaatag accttccttc      2100
     gacaacggtg gatatatcta agtggaagtt tccatcgtat gttcaactag ctgatcccaa      2160
     gttcaatgaa gagggaggga ttgatttgct gataggagca gaggtgtttc tagaccttct      2220
     tctagaaggg tcatacgtca tgcagccaag tatgggtcta actttgagaa acacgaagtt      2280
     aggttggatt gttagcggag catgctactc tgagcctggg aggacagtat gcaccatggt      2340
     acaagctgat gagagcgagg atattaagtc gcttatggag tcgttcttca agattgaaga      2400
     agtaacagga gaatcgcttt taagcaagga agagcaggag tgtgaagagt tgtacagaaa      2460
     cacgacaact cgtgattcgg atggaaagta tgttgttcga cttccattta agaagctgcc      2520
     tgctgatgcg cttggaaatt ctttggatac agcgaagcga cgatttatag cgcttgagaa      2580
     gaggataaga cgtgatgtgg aaattgaagc acaatacaag agcttcttga aagaatatga      2640
     agatttgggt cacatgcgca agattgatgt agcgaatgaa gaacttgcct attatcttcc      2700
     tcatcatccc gttctgaagt tggaaagcac gaccacaaaa tgtcgagtcg tgtttgatgc      2760
     gtcttgtagg acatcgtcag gtgcatcgct gaatgatatt cttaacatcg gacctacgat      2820
     tcaagaagat ttggtttcga ttttattgag atttcgtaca tacgcagtgg cacttgtagg      2880
     agatatagaa aagatgtatc gtcaagttcg agtacacgaa gatgatcgca agtggcaaag      2940
     aatcttatgg agaagcaaca cgagtgaaga gattaaagtg tttgagttga acactgtaac      3000
     gtacgggacg tcatctgcac cgtatttggc gataagaaca ttgaatcaaa cgtttgaaga      3060
     tcacggtgga gaataccctt tagcagcatt atgcaagcgt gacttttatg ttgatgattt      3120
     gatttcggga gctgagacgg aagaagcagc aagggagaca agagaccagt tggacaacct      3180
     gctgaagaaa ggaggattta gccttaggaa atgggcatca aataaacctg ctgtagtgag      3240
     cgatatacct gaattagcaa gagcgataac aactgattgt gtactaacga gcagtttaag      3300
     tccgatcagt acccttggat tgtattggga tccaattttg gatcagttga aggttaaggt      3360
     acgatcaatg aactccacca atcctagtac aaaatgctct gtgttatccg acattgcaag      3420
     gatttatgac ccactaggct tcttagaccc cgtgaagatg aaggcgaaga tctttatgca      3480
     acagatttgg acactaagaa gcccagatgg tagtgtctgg agatgggaca tgggtcttcc      3540
     agaaggcatg cagagagatt gggcaagatt tgttaatcag ctagactgtt tgaacaatgc      3600
     agcatttcca cggctagtct atcctgctga tcgaaacgat acacagcttc acatcttctg      3660
     tgacgcttca gaacagggat acggagcatg tgcatatcta cggtgtgaga aaaatgaatc      3720
     gtatattact tcgaggttgc ttacatccaa atccaaagtt gcgccgctgt ctcagaagac      3780
     aacaattgct agactagaac tctgcgctgc tgtgttggga agttgtttgt accaacgcat      3840
     tataaaggca ttgagaagtc ctattcagtg ctttatgtgg acggattcca tgacagttgg      3900
     tcattggttg agtggagcac cgaatcggtg gaagacattc gtagcaaatc gggtttccaa      3960
     agtgcaacga gctacagagg aatgcaaatg gcgtcacgtg ccaggtacac agaatccagc      4020
     agatttagtg tcacgaggat gtatgcctga agagtttatg aaccatggtg tgtggtggat      4080
     tggtcctgat tggttgcggg aaagtcaaga taaatggcca gctgatgtat gttttggcaa      4140
     gtgtttgaat gtaccagagc agaaaaccat ctctcttgtg acgacagata agcaacagga      4200
     ggaacacgaa ttgttttctc gttattcgtc gtggtcaaaa ctaagaagga tcattggagt      4260
     ttggatgaga tactttggca tgttaaggaa agaaggtgaa gcaggcaata aatggatctc      4320
     aagtaataat ctgtatgcag cggatcgtgc attatgcaga ttagcacaaa gagattgttt      4380
     cagcgtggaa ctaaaggcgt tgaagaatca tcaacaagta tcgaagaagt cgccgatgaa      4440
     gtggtttaaa ccagtattgt gtgaagacgg attaattcgt gttggaggtc gactgggaaa      4500
     ttcggcagag tcacacaatg cgaagcatcc aataatcatc cctggacaac acactttggc      4560
     tcgattaata gtgaaatact atcatgagca gatgttacat gcgggtcctc aacttgtttt      4620
     aagtacgatt agacaacatt attggattgt tggcggccgc aatttagtca gacgagttgt      4680
     ccacgaatgc ttcacatgtt tccggtgtaa gccagtacca gttgttcagc caatggcaga      4740
     gttgccagca agtcgtgtca ccgaagcaag acctttcgcc atatgtggag ttgactattg      4800
     tggtccagtg tacgtgaagg gcaagcatcg tcgcgcagtt cctacgaaaa catatattgc      4860
     aattttcgtt tgtttcgtaa cccgagccgt acatgtagaa ctagtgtctg atcttagcac      4920
     aagcgcgttt ctagcggcgt tgaggagatt tgtcggacgg cgaggattgg tggcagagat      4980
     ttattcggac aatggcacaa attttaaagg cgcttcaaac gagctgaatg aggtattcat      5040
     gttgctgaag tcagaccagc atcaagaggc gattcagctg tggactgcta gccaaggaat      5100
     ccaatggaaa ttcattcctc cacgcgcgcc tcacttcggt ggtctgtggg aggcggcagt      5160
     aaagtcacta aaacatcatt tgctccgagt tttaggtacg acgtcgttta cgttcgagga      5220
     tctggctacg ttgcttatcg aaattgaatc gtgtctcaac tcgcgaccga tcaccccgat      5280
     gtccgacgac cccctagata ttgatgtgct gacacctggg cactttctaa ttggtgcaca      5340
     tatgcagcag atcccagcac tcgagttagg agagatacct gtgaatcggc tcgatcactg      5400
     gcgcagtgtg cagcaaagaa tgcagcagtt ctggaagcgt tggcacacag aatatctgca      5460
     acaacttcag gccagagcaa agtggttgga tcctgctaca gcgattgaac caggagcaat      5520
     ggtattgata ggagaagaaa ataccccgcc aactcgatgg cctagaggtc gcgtactaga      5580
     ggtaacaaca ggaaaggacg gggtggttag ggtggtaaaa ctgcgaacgg cgaacgctaa      5640
     aaatgttgta cggccagtat ctaagttgta tctgttacca aaggctacac aaaacccgta      5700
     ggagccaaac gaaagagtaa aatattcatt ttaggtggcc ggaa                       5744
//
ID   BEL-21_AnFu-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-216
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 725-725 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 216 BP; 70 A; 44 C; 52 G; 50 T; 0 other;
     tgttccgcct tgcgttatgc aacccgaatt actgacgaca tagaaccggt tggtagatag        60
     tagtagtgag cgcatctgat aggaccagaa taggaggtgc gtaaacgcac tactacgaaa       120
     tgaattgtca gttgcaataa agagtcaaaa gagaaaagtt cgtcaataat actgagtcac       180
     attgtatccg aaccggccct tcgtacagag cgtaca                                 216
//
ID   BEL-21_CQ-I repbase;    DNA;    INV; 7569 BP.
XX
AC   AAWU01039820;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_CQ_;
KW   BEL-21_CQ-LTR; BEL-21_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7569
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 195-195 (2011).
XX
DR   Genome; AAWU01039820; Positions    9659   17227.
XX
CC   'ACACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           752..5257
FT                 /product="BEL-21_CQ-I_1p"
FT                 /translation="MLFSWRSVVTMGDLQTLRKKQEILLNKLEVLNQFVEH
FT                 YKAEEHECQLEVRLGMLNDVYQEFTDLRTKLELLLEEKDAAKFANAEPKVK
FT                 QEVVSHREEANLQVVQEFDNKFCKIKAMLIAKRPVKDVAQTVPSVGDADTS
FT                 FPLRVKLPDIHLPNFSGNLREWVTFRDTFKSLIHRNSKLTSMDKFTYLQSS
FT                 LSGPALLEISGIDLSEENYSVAWSALEEEYGNKKLIVKAHLDVILDLEPLT
FT                 KESYDGLSHLLGEFEKNLQMLDKMGEKTADWSTVMAHVLCSKLDSATLRNW
FT                 ETHHNSKEVPTYKALLVYLRGHCSVLQSIKRAKAKSSEQRPPKAAVCHTAV
FT                 RSSNQCHFCSGPWHTPFRCFKFQKMTISERNDAVSRNKLCRNCLKPGHYPR
FT                 TCEGGTCHHCHQKHHSMLHNDQMRSSVPQQQSRPTATTSVQRQQPRPQNTN
FT                 QTTHTPANNAPANQTNLQTTDSQTTQPQTTSQNYVALPVTPTHNIILSTAL
FT                 IRIKDRFGNTLLARALLDSCSQHCLMTREFSRRLKFERQSSYLPIQGIGTS
FT                 RCVSTQLVRADVGPRSDRISAYESEMQFYVLPKLNISLPTSYIDPSTIQLP
FT                 DWMFLADPEFHKTGPVDVIIGAEFYMDLLTDERVKPAADGPTLHNTVFGWI
FT                 ISGRLPGSVPESTSLVSVAAIDELLTRFWELETCRTKSTHSIEESTCEQLF
FT                 EETTVRDETGRFVVTLPKKKYAVQRLGESRSTAIKRFLGLEKRLSANPDLK
FT                 QQYSDFIHEYEAMGHMKRVAGDTAGGELAYYLPHHCVLRLDSTTTKLRVVF
FT                 DASCRMSTGVALNDALMVGPVVQDDLLDIALRFRLHAVAIVADIAKMYRMI
FT                 RVQPDDQRLQRIVWRDNVDEPIRIYELTTVTYGTASAPYLATKCLQKLGEI
FT                 GEKTHPSAAKVLKRDFYVDDMLAGAHTVAEGKELVAEMVDLMESGGFSLRK
FT                 WHSNSRDILLDVPEHLRDERTLLKLDTSDATVKTLGLVWEPSTDCFRFRSP
FT                 KWNDVAVITKRVVASDMAMIFDPYGLIGPVFVQAKIFVQKLWRMELDWDAA
FT                 LPEDLQEYWREYRRNLAGLDSLSIPRWIGTGADDQNVQLHGFCDASVNAYG
FT                 ACIYIRTVSANGDVTVRLLASKSRIAPLENLKKKKRKQSIPRLELASALLL
FT                 AHLYEKVANAINFRGKAFFWTDSMIVRCWLASLPSRWNQFVANRVSEIQHL
FT                 TESGSWDHVPGIENPADIISRGMTPMQLQYSKLWFNGPDWLSLDHQHWPHA
FT                 QVPNAADFDHEELEEHNAVAAVARDTEPCKLFTANSSYTVTIRTTAVICRF
FT                 CFNSRAANKHCRRVGPLTAEELEVALKKLVRLAQRECFPEEYDALSRDRAI
FT                 PSNSRIAALNPRIVDGILCVGGRLQHAAVSDNRKHPYILDHRHPFTKLIVT
FT                 HYHETMFHAGQQLLISAVRERFWPINIRNLVREVIHKCVDCFRVKPKVLDQ
FT                 LMADLPPERHRVHRSHESELTTADLFRSRTRSVELAQ"
XX
SQ   Sequence 7569 BP; 1877 A; 2105 C; 2046 G; 1541 T; 0 other;
     tttggtcctt cgaaccggat ccgaaggatc cggtctggcc aggttcggga cacttcgcga        60
     aacggacagt tcagtgcgcg aagtgttggc ctgctcgcga agagcagtgc aaagtgtacg       120
     gtgcagaagc gcgcctggac agttttggtg cgtgctgaaa acggacaaaa agtgcacgga       180
     aaatccgtga aaaaagtgca aaaaaaaacg ggaaaaaatc ccaaaaagcg gagctgaaca       240
     gtggcacaat agtgcattga aaagcagctg aacaaaggca gtgacgatca gtgcagtgcg       300
     gtgaagaaga tttcgccatc gcggaactca cggcgactca cggtgtgcgc gagctttggc       360
     aagcgtcgcg acgtcaccat ctcaaccggt tggctgacgt catcgttcga gtcggtgatt       420
     gattggcgcc tggagctttc gggacggatt tggcggattt cgaagcagat tcaggagagt       480
     attttgcacg taaacggtgg ctcggctagt ttggctcttt gcggagaaat aaagtggctt       540
     ttgaaaataa aattgcacga gagtttttat tagtctggtc aggttgcatg agtgttgtgt       600
     tgttctgtct ggtcctctgg aattcccttg tcgattcccc tgtcgctgct gtcaatactg       660
     ggtcgtacag ttcgcaatct gtcttgcgcg gtcgcgtcgt ggaacgtcga gtcgatctgt       720
     ctgtttccgg tgaatctgaa agtgaaagtg gatgttattc agttggcgat cagtggtcac       780
     gatgggcgat ctgcagactt tgcggaagaa gcaggagatc ctgctgaaca aactggaggt       840
     gctgaatcag ttcgtcgagc actacaaggc ggaagaacac gagtgccagc tggaagttcg       900
     actcggaatg ctgaacgacg tgtaccagga gttcacggac ctacggacga agctggagtt       960
     gctgctggaa gaaaaggatg cggccaagtt cgcgaatgcg gagccgaagg tcaagcagga      1020
     ggtcgtgtca catcgtgaag aggccaatct acaggtggtg caggagttcg acaacaaatt      1080
     ctgcaagatc aaggcgatgc tgattgcgaa gcggccggtc aaggacgtcg cgcagactgt      1140
     tccaagtgtt ggtgatgcgg atacctcgtt tccgttgcgc gtcaagctgc ctgacattca      1200
     tctgccgaac ttcagcggaa atctgcgcga gtgggtgacc ttccgtgaca ccttcaaaag      1260
     tctcattcac cggaactcga agctgacatc gatggacaag ttcacctatc tccaatcgtc      1320
     tctttctggt cctgcgttgc tggagatcag tggcatcgat ctgtcggaag aaaactactc      1380
     cgtcgcgtgg tccgcgctgg aggaggagta cggaaacaag aagctgatcg tgaaagccca      1440
     cctcgatgtc attctggatc tggaaccgct gaccaaggag tcgtacgatg gtctcagcca      1500
     cctgctcggt gagtttgaga aaaatctgca gatgttggac aagatgggcg aaaagactgc      1560
     cgactggagt acggttatgg cgcatgtcct gtgctcaaag ctggactcgg ccacgcttag      1620
     gaattgggag acccaccaca acagcaagga agtcccaacc tacaaggctc tactggtgta      1680
     cctgcgcggc cactgttcgg ttcttcagtc gatcaaacga gcgaaagcga aatcgtcgga      1740
     acagcgccct ccgaaagcag cagtctgtca cactgctgtg cggagcagca accagtgtca      1800
     cttttgcagc ggcccgtggc acaccccgtt ccggtgcttc aagttccaga agatgacaat      1860
     ctcggagcgc aacgacgctg tttcgaggaa caagctgtgc agaaactgcc tgaagcctgg      1920
     acattacccg cggacgtgcg aaggaggaac ttgtcaccac tgtcaccaga aacaccactc      1980
     gatgctgcac aatgatcaga tgagatcctc cgttccacaa cagcagtcga gaccgaccgc      2040
     gacgacctca gtacagcgac aacaacccag accacagaac acgaatcaga caacacacac      2100
     tccagccaac aatgcacctg ctaatcagac taacctacag actacagact ctcaaaccac      2160
     acagccacaa accactagcc aaaactacgt tgcactaccc gtcacgccca cacacaacat      2220
     catcctgtca accgcgctca tccgcattaa agaccgcttc ggaaacacgc tgctagcgcg      2280
     tgcgcttctt gactcgtgct cacagcactg tctgatgacc agagagttct cgcggcgact      2340
     caaattcgag cgacaatcgt cgtatttgcc gatccaaggg atcggaactt cccgttgcgt      2400
     gtcgacgcag ctcgtgcgtg cagatgtcgg tccgcgttct gatcggattt cagcgtacga      2460
     gtcggagatg cagttctacg tcctgcccaa gctcaacatc tcgttgccga cgtcgtacat      2520
     cgacccgtct acaattcagc tgcccgactg gatgttcctg gctgatccgg agttccacaa      2580
     aaccggtcca gtggacgtca ttatcggtgc cgagttttac atggacttgc tgacggacga      2640
     acgggtgaaa ccagctgcag acggtcccac gctgcacaac acggtgttcg gttggatcat      2700
     ttccggccgg cttcccggca gcgttccaga atcgacgtct ctcgtatccg tcgcggcaat      2760
     cgacgagctg ctgaccagat tttgggaact ggaaacgtgc cgcaccaaga gcacgcactc      2820
     gatcgaagaa tccacgtgcg agcagctgtt cgaggagacg acggttcgtg acgaaactgg      2880
     cagatttgtt gtgacgctgc ccaagaaaaa gtacgctgtc cagcgtctcg gtgagtccag      2940
     atcaacagcc atcaaacgct tcctgggact ggagaagcgg ctgtcagcga atccagacct      3000
     gaaacaacag tacagtgatt ttattcacga gtacgaagcc atgggacaca tgaaacgggt      3060
     tgccggcgac acggccgggg gagagttagc gtattacctg ccacaccact gcgtcttgag      3120
     gctggacagc accactacga agctccgcgt ggtgtttgat gcttcttgtc gcatgtctac      3180
     cggagttgct ctgaacgatg cgctcatggt gggaccagtt gtgcaggacg atttactgga      3240
     cattgcgcta cgctttcgac tccacgctgt tgccatcgtc gctgacatcg ccaagatgta      3300
     ccgtatgatt cgcgtccagc ctgacgacca gagactgcag aggattgttt ggagagacaa      3360
     tgtggacgaa cccatccgaa tctacgagct gaccactgtc acgtacggaa cggcgtctgc      3420
     gccgtattta gcgaccaagt gcttgcaaaa actcggtgag atcggagaaa agacgcaccc      3480
     atccgctgcc aaggtcctca aacgtgactt ctacgttgac gacatgttgg caggtgcgca      3540
     cacggtcgca gaaggaaaag agctagtcgc cgaaatggtc gatctgatgg aatctggcgg      3600
     attctcgttg cgaaagtggc actcaaactc ccgagacatc ctgctcgacg tcccggaaca      3660
     tcttcgcgac gagcggaccc tgctaaaact ggacacgtct gacgcaaccg tcaagacgct      3720
     cgggctcgtc tgggagccca gtacggactg tttccgtttc agatcgccaa agtggaacga      3780
     cgttgccgtg atcacgaagc gtgtcgtggc ctcagacatg gccatgatct tcgacccgta      3840
     cgggctgatc ggtcctgtct tcgtccaagc gaaaatcttc gtgcagaagc tgtggcgcat      3900
     ggaactggat tgggacgccg ctctgccaga agatctgcag gagtactggc gtgaataccg      3960
     cagaaatcta gccggtctag acagcctgtc gataccccgc tggattggca caggtgcaga      4020
     tgaccagaat gtgcagcttc acgggttctg cgacgcttca gtcaacgctt acggtgcgtg      4080
     catctacatt cgaaccgttt cggccaacgg cgacgtcacc gtccgcttgc tggcctccaa      4140
     atcccgcatc gcaccgctcg agaacctgaa gaagaagaag cgtaagcagt cgattccccg      4200
     cctggagctg gcgtccgctc tgctgctggc gcatctgtac gagaaagtgg ccaacgccat      4260
     caacttccga ggaaaagcgt tcttctggac ggattccatg atcgtacgct gctggcttgc      4320
     gtcactgccg tccagatgga accagttcgt ggccaaccgt gtgtccgaga ttcaacatct      4380
     gacggagagc ggatcttggg accatgtgcc cggaatagag aacccagctg acatcatttc      4440
     tcgcggcatg acaccgatgc agctgcagta ctcaaagctt tggttcaacg gacccgattg      4500
     gctgagtctt gaccaccagc actggccgca cgctcaagtg ccgaacgcag cagacttcga      4560
     ccacgaagaa ctggaggaac acaacgctgt cgctgcagtt gcacgtgaca ccgagccctg      4620
     caaactgttc acagcgaatt cgtcgtacac cgtgacaata cggacgaccg ctgtaatctg      4680
     ccgcttctgt ttcaacagcc gtgcggcgaa caagcactgt cgcagagttg gtccgttgac      4740
     ggctgaagag ctcgaggtcg ctttgaagaa gctggtgcgc ctcgctcaac gagaatgctt      4800
     cccggaagag tacgatgctt tgtccagaga tcgcgcgatt ccaagcaact cccgcattgc      4860
     tgcgctgaac ccaagaatcg tcgatggaat cctgtgcgtc ggcggccggt tacagcacgc      4920
     cgcagtctcg gacaatcgga agcatccgta cattctcgac catcgtcatc cgttcacgaa      4980
     gcttatcgtc acacactatc acgagacaat gtttcacgct ggacaacaac tgttgatctc      5040
     tgctgtgcgt gagcgtttct ggccgattaa catccgcaac ctcgttcgcg aggtgatcca      5100
     caagtgtgtc gattgcttcc gtgtcaagcc gaaggttctg gaccagctca tggcggatct      5160
     gccgcccgaa cgacaccgtg tacaccgttc gcacgagtcg gagttgacta ctgcggacct      5220
     tttcaggtcg cgtacccgca gcgtcgagct cgcccagtga agtgcttcgt tgccatcttc      5280
     gtctgcctgg tcaccaaggc cgttcaccta gaactagcag cagacctaac gacgcagcat      5340
     tctgcgccct caaacggttc actgcccggc gtgcaaacga agctggtcat gtgcgacaac      5400
     gccaagaact tcgtcggcgc aagacgtgag ctgagcgaac tcgccaagct gttctaagtc      5460
     agcagttcga agaggagatc attcgcgaaa cagcgaacga cagcatcgag ttcaagttca      5520
     ttcccgctcg ctcgccgaac ttcggcggcc tctgggagtc cgcagtgaag agcttcaagt      5580
     tgctgttcaa acgtacgatc gggctgcaca ccctgctgta cgacgagttc cagactgtgc      5640
     tggtccagat cgaagcgatc ctcaactcgc gaccgctcac gccgctcagc aacgaccccg      5700
     cagacttcga agcgctgacc ccaggacact tcctgatcca gcgtccattc actgcgattc      5760
     cagaaccaaa cctcgaccac attcccgaga acagactgtc ggcctggcaa accgtgcagc      5820
     ggtacacgca acagctctgg aagaagtggt ccaacctcta cctgtcggac ttgcacaacc      5880
     gcacgaagtg gacaaagcaa aaagacaacg ttgctgtcgg aaccatggtc ctgctgaagg      5940
     acgagaacct cccgccgcta aagtggcagc tcggacgcgt ttccgatatc cacccgggag      6000
     ctgacggcaa catccgtgtc gtcacggtgc gcacaaagga cggtagctat cagcgtgcga      6060
     tctctaagat ctgcattctg ccgatccgtg acaacctttt taccgcgcaa ggggagaact      6120
     aggactcctc caacggcgga ggtcgaaagg cctccgcaca ccagttaagt tatgtattgt      6180
     tttgaatttc aaaaagttca ccgaatcttt ttcctccaga gtcgccaccc tgtctgcgcc      6240
     cagacctgcg ggtcgttctg cgctgggagg ccgtcaaaaa gatcggaact ttccgaaatg      6300
     ctctgaggta acctgttttg tttcggttgt ggtttgcatg aagatgtttg cttgcgatct      6360
     agctggcaaa agcccagcat aattacggtt acggataaca gcggcgcaca gcgccttttc      6420
     ggtcgaaaag actgccccca ctgtttgaac tcagctaaat tctgttccac gtttggaact      6480
     cttcgaggta cacgcgctca cgatgacagc agcggaggag acgtcctccc ggtcccatct      6540
     gccacgacca gcagcgagct tggccagctc gttcccaatc gcagcccgat ggagccaacc      6600
     cccgtcatcg cagcatcgta cacccggaga accatcgtgt cggtaaccgc tgagggtcaa      6660
     cagcgacgcc aggaggcgtc gggggaggcc acggaggtct cccccagttc aggcaagtcg      6720
     tttttgaata taatttaact gattaaaaag caccctctca tctgattagg gagtctcaca      6780
     tcgcatcgac gccgacgccg gcgtcaccga tcgcatcaga caacggagca gcagaacacg      6840
     cacggcgcca cccacgcacg gtggctttgc gttcagcaca gaccagcaca gatcaacagc      6900
     aacagcagca gacagacgaa ccgacaactg acgtcggcgg cacgccgtcg aacaacaacc      6960
     gcagcacatc gaagcatcca cccccgcgac aaacagaaga tcaaccgatc gagccaagca      7020
     gcagtatttc aaatctacac cagcaaacgg tagcagttca agcgctacaa gtagcagatc      7080
     cagctcaagt tcagggtcaa cctgctgtcg ccatgatgaa acagcacctg aaagaacgac      7140
     aaatcagcat tttgcagcgc accacgacac caatcaaccc cagaagtgtc cccagcagca      7200
     gcgcggcatc caggttgatc gtttgatgtc cagtccggtc cagaaagcag caaatctgac      7260
     gcaaaattgg tgcattttcg actgcagcga aatgcacgat ccagccagcc cagaagaaga      7320
     aaaatatctg gctattgttc gtgttcgatc gacggccgca gccgcgatcg ctagtacata      7380
     aggagaacaa tgaccaatct tgacttaggg taatagcaga aacagtagaa gtagataaga      7440
     gacgaagata acggataaga gataaggaac agaatcaaaa caaatcagtg ggatagcagt      7500
     gggaattgta gtagtagttg taacagcgag aagaatgttt gaatcagagt gattccaagg      7560
     cggccggta                                                              7569
//
ID   BEL-21_CQ-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   AAWU01039820;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_CQ_;
KW   BEL-21_CQ-I; BEL-21_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-323
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 196-196 (2011).
XX
DR   Genome; AAWU01039820; Positions    9336    9658.
XX
SQ   Sequence 323 BP; 83 A; 82 C; 61 G; 97 T; 0 other;
     tgatcgcgcg agagatcaat tcacaatttt accagcctaa atgtgatcca caaataaatg        60
     taattttgtc cctatctgtc cctggccatc tctgatgaga gccagtggtg atcctcgctc       120
     tttttgaact ctccccggtt cgcatcccat gtactgtccc ctttagagtt tagttagaaa       180
     taaactgccg actacgccag acggttacgc gttttaaaat aaacgttttt ctgttcgcgc       240
     aataaaattg ttttagttcg cgtagtttaa aaacggtgtt ttactgcgtc cgaaatctcc       300
     cgaaccgacc acacgcgcga aca                                               323
//
ID   BEL-21_DAn-I repbase;    DNA;    INV; 8522 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DAn_;
KW   BEL-21_DAn-LTR; BEL-21_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8522
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 297-297 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5212-5790] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           989..2185
FT                 /product="BEL-21_DAn-I_3p"
FT                 /translation="MSTKEKIAIIEDQVRLTRQVDALLAKNSYLEEDRDSL
FT                 KNIELRACTNHNHLVQLGAVEHEYFTKNHFDSMLSKFKSAKEKIKKIIGQD
FT                 ELFSRLEGAIKNLEDYLEQTYIEIQERKAETFPIRIKKLKMFLSRVETVSD
FT                 LINIEGLNNKYMPKIIELREDVEIHIELMNNKIEVGRLEKVEGSNPKMDEL
FT                 PTLPKIEVPSFFGNSKDWDHFYELFKELVHSRMDLSPSLKLSYLKSALKGE
FT                 ARNVVSHLLLGSGNNYDAAWELLIKRYENNRKIFSDQLNRLIDLPKINLDS
FT                 YRHLKNTIDSINESIYMMRLKANLTEESDCIFAHIIIKKFNIEALQQYEGQ
FT                 VKKSNDIQNLKDVIEFLDQRLSSLTSVGNELPTRKIIQKITQITKHARCAK
FT                 CPGIN"
FT   CDS           join(2161..6153,6157..7947)
FT                 /product="BEL-21_DAn-I_1p"
FT                 /translation="MCKMPGHQLSFCYKFKALSPQEKTNMVKKLNWCYRCL
FT                 KHSSNSKCPSELVCSYCQKLHHSMLHFKKENVNTCMTSEPALLATAYVQIK
FT                 GQDGEFGKFRALIDNGSQSTLISEEAAQKLKLPKIKAHTEISGVSATGACV
FT                 SNHKLKLTIKNNIKYSKEMSTNAIVLPKLMKCLPTNTIFINKSDWKGFYLA
FT                 DPNFDKPGRIDLVIGADLYPQILLPEITKKGMLLGQKTIFGWTVSGCTKSR
FT                 GSKSIVATSIELKQMDRYWEVEEEDSNDLETETCETNFKKCTKKDPNGKYI
FT                 VAIPFKEDTTLGDSKNQAMARFMNLEKRLQKNEKLRIEYSKFMKEYLDLGH
FT                 MVEVNDEGKYYLPHQAVIRESSLTTKLRVVFDASAKTSNKKSLNDIMWVGP
FT                 RVQKDIFDIIVNWRKWEYVVSSDIEKMYRQIKINHKDQKFQYILWRDDPKT
FT                 TVKTYKLTTVTYGTASAPYLATRVLADVGENCENKMIGEIIKNDFYMDDLM
FT                 TGANSIEDATTIVELISKELANSGFNLRKWVSNNAKILEMVENSGDNKIVS
FT                 IREDEFVKTLGLQWDPSKDEFKFTVCCSEPKMLTKRFVLSTLSKIFDPLGW
FT                 LAPVTIVGKIFIQKLWTAGINWDQELVNEDRKEWEEYKSGLEALGQIRVPR
FT                 WINFKSELCIQIHGFADASEKAYAAVVYAKVGSEVIIIASKSKVNPIKNRK
FT                 TIPKLELCAAHLLSKLMMRIMEAMKNYKVELYAWSDSTITLAWIKNGLNKI
FT                 KFIRRRTDEIRELKNAEWNHIRSEDNPADLASRGVSADQLVNCNLWWRGPK
FT                 WLTDPKSQWPQSPIMEESLILNTLVKTKDDAIYELMQKFSCIHKLTRVIAY
FT                 VIRFLRMKTRTNSNPKFLTAKELKEAEMIIIKKQQEFQFNKEIKYLRTGKE
FT                 IEISSKIIGLNPFLDINGILRVGGRLQNSKAAFEVKHPIILDKGNISTLII
FT                 RDAHKNTLHGGINLMRNYVQRKYWVIGLKNIIKKQLRECVKCSRYRKITVE
FT                 QIMGNLPDYRVNMSYPFLNTGIDYAGPYLIRCSKNRGQKTFKGYIAVFVCM
FT                 ATKAIHLEVVSDLTSDAFLAAFKRFLARRGKCANIYSDNGTNFVGASRKLD
FT                 EELEKAIRENSKIASQLQKERIQWHFIPPASPHFGGIWEAGVKSMKYHLKR
FT                 VIGDNVLTYEEMSTLLCQIEAVLNSRPLYSSSEDVDDNEVLTPGHFLIGRP
FT                 LLDAIEPNDEIGKINNLDRWRFIQKIKRDFWNKWKDDYLNTLQQRYKWKRN
FT                 SSNIKKGQVVILKDDSCHPARWPLAKVEEVHKGKDEKVRVVKLRVQENVVT
FT                 RPLNKICPLAGVNDLDDAERQSRSNPPKARSSRFSKLGVMLALIMLSLCCQ
FT                 LTNAVPAIRDSKYGFEEIPKSSSIYLDPMGDIEVVSSSWNLVIYYDMEAYF
FT                 EMIHKGKNIITKMRLVCEKLHGFEDQCNLILENTLKQILELEENNKLFMTH
FT                 NKSRQRRAPFEFIGSLYHILFGVMDEDDRVQTEENMKNLLNNQESLKELSE
FT                 KQTSLVDSTTNILKKTTEEVNTHFRSMNKRIENMTVILQESYYVYKESIKF
FT                 FMVTKELSRLIDECEKIQAGIISLLIDINHGRLNTNILRPSQLKNEIARIK
FT                 DVLSENLILPGKRSGTELKDVYTLLTARGLFVDKKLIINAKIPLFGRHASK
FT                 LYRVISIPVRAENQTILAQIDAEYLVYNFEIDSYHLMTESTIAKCQKWQAN
FT                 KRVCDGSWPWSNGNDNSCQLGPLKPNRPSNCFYKPVLSSNSFWVELEKRSS
FT                 WLFKVEANTKLRLQCGHSKIQIIDLPEQGILTISSECTARTDDKILIAQHI
FT                 IETESQEALASAYIGEINEIPKIAWDPLKPPVMNHTAEIAHLAKQIEDLKA
FT                 QNLELKNIDFHHVSGHSSLILIMIIITVLIISYVRKLKSRRQLMAIALPTP
FT                 MPNV"
XX
SQ   Sequence 8522 BP; 3337 A; 1328 C; 1614 G; 2240 T; 3 other;
     tttggtccat cgagacaccc tgacgttttc ccccctgtgg taagagactc aggttttaaa        60
     aaactggcac ctagaagtgg ctgttgaaaa aattaaaatt ctcagcccag ggtagctaaa       120
     aaataaggct gcgatctgag taaaaaagag ctcagtttaa atatcgtagt cctctgttgt       180
     ttccccccaa gaggtaagga acacagagaa taaaataata taaatgccaa tgagcataat       240
     taaatagaaa ggaaaaacaa aaattaataa atatttttgt ttccttctat cgtgtttgtt       300
     ccgaaacgac accggaataa tacaaaaaat atatatatat taaaatatat ataaaaaata       360
     aaatttgtgt gttggcgtat ccgaggccct acatcggaaa agttaaaaag taattgtgat       420
     tacttgattg tgtaaaagct taaaaaaaaa taaattatat ataaataaac ttaaaaaaaa       480
     aataaaattt gtgcgtcggc gtatccgagg cctacatcgg aagagctaaa aagtaattgt       540
     gaatcttama atacaaccga aaaaaaaaaa acctacaaaa attaaatgaa aaaatatata       600
     tattatataa aaaatataaa tataattatt aaatcggaaa acatcaaaaa aaaaaacaac       660
     atcagcatca gtatcagcat cagccgtgac tagcagagga aacatcagtc acagcagcag       720
     tgaacacccc aagcaggagc acatcaggag caatatcggc cgaagcaaca gcaccagtga       780
     cgcagaagca acatccgcag cgacaccaag ttcaacagca acatcagcca gcagcagtga       840
     caacatccca aggagaagca gcatcaacag cgcagcgaca acaaacaaca tcagaaatta       900
     tattcatcgg caagtttggt cttttagttt tataacttaa tttaatttta ataacttaaa       960
     tataattaaa aaaaaaaaaa aatccaatat gtctacaaag gaaaaaatcg cgattataga      1020
     agaccaggtg cgtctcaccc ggcaagtaga tgcgcttctc gcaaaaaatt cctatttaga      1080
     agaggatagg gattcactta aaaacatcga gcttagagcc tgcacgaacc ataatcattt      1140
     ggttcaactt ggtgctgtag agcacgaata ttttacaaaa aatcatttcg atagcatgct      1200
     atcaaaattc aagtccgcta aggaaaaaat taaaaaaatt attggccagg atgagctatt      1260
     ttctaggctt gagggtgcca taaagaatct cgaggattac ctcgagcaaa cttatataga      1320
     aatccaggaa aggaaagctg aaacctttcc gataagaatt aaaaaattaa aaatgtttct      1380
     cagcagagta gaaacggtgt ccgatctaat aaatattgaa gggcttaata ataaatatat      1440
     gcccaaaata atagagctca gagaagatgt ggaaatacac attgagctca tgaacaataa      1500
     aatcgaagtg ggtcgattag aaaaggtaga aggtagtaat cctaaaatgg acgaactacc      1560
     taccctacca aaaattgagg ttcccagttt ctttggaaac tccaaagatt gggaccattt      1620
     ttatgagtta ttcaaggagc ttgtgcattc aagaatggat ttaagtccat ccttgaagct      1680
     aagctacctt aaaagtgctc taaaagggga agcacgaaat gtggtctccc atttattgct      1740
     tggctcaggc aataattatg atgcagcctg ggagttgctc ataaaaaggt atgagaataa      1800
     tagaaaaata ttttcagacc aattgaatcg cctgattgat cttccaaaaa taaatttgga      1860
     ctcatatagg catttaaaaa atacaattga ttctataaat gaatcaattt atatgatgcg      1920
     tctcaaagca aatctgaccg aagaatcaga ttgcattttt gcgcatatta ttataaagaa      1980
     atttaatatt gaggctctgc aacaatatga gggccaagta aaaaagtcaa atgacattca      2040
     aaatttgaaa gatgtcatag aatttttaga tcaacggctt agttcgttga catcagttgg      2100
     aaatgagtta ccaactagaa aaataataca aaaaatcaca caaataacca agcatgcccg      2160
     atgtgcaaaa tgcccgggca tcaattaagt ttttgctata aatttaaagc attaagtcct      2220
     caggaaaaaa cgaatatggt taaaaaattg aattggtgct acagatgttt aaagcacagt      2280
     tcaaactcaa aatgtccaag cgagctagta tgctcgtatt gtcaaaaact acaccatagc      2340
     atgttacatt ttaaaaaaga gaatgtaaat acatgcatga cctctgaacc agcgttgttg      2400
     gccacggcgt atgttcagat taaaggtcaa gatggtgaat tcgggaaatt tagagcattg      2460
     attgacaatg ggtcacaaag cactctaatt tctgaagaag cggcacaaaa acttaagttg      2520
     ccaaaaataa aagcacacac tgaaataagt ggagtgtcag caacaggtgc ctgtgtttca      2580
     aatcacaaat taaaattgac aattaaaaat aatattaaat attcaaaaga aatgagcaca      2640
     aacgcaattg ttttgccaaa actaatgaaa tgtcttccca caaatacaat tttcataaat      2700
     aagtcggatt ggaaaggatt ctatttagcg gatcccaatt tcgacaaacc tggtcgaatt      2760
     gacctggtaa ttggtgcgga tttatatcca caaattttac tgccggagat aaccaaaaag      2820
     ggtatgcttc ttgggcaaaa aactatcttt ggatggacag tgtccggatg cacgaaatcc      2880
     aggggtagta agtcaattgt agcaaccagt atcgagctca aacaaatgga ccgatattgg      2940
     gaggtagaag aagaggatag caatgactta gaaacagaaa catgtgaaac gaattttaaa      3000
     aaatgtacta aaaaagatcc gaatggaaaa tatattgttg ctataccttt taaagaagat      3060
     acaacattag gggattcgaa aaatcaagca atggctcgtt tcatgaactt agaaaagaga      3120
     ttacaaaaaa atgaaaaact tcgaattgaa tattcaaaat ttatgaaaga atatttggac      3180
     ttaggacata tggtagaagt aaatgatgaa ggaaaatatt accttcctca tcaagctgtt      3240
     atcagagaat ccagtctcac aacaaaatta agagtagttt ttgatgcttc agccaaaact      3300
     agtaataaaa aaagcctaaa tgatattatg tgggttggac caagagttca aaaagatatt      3360
     ttcgatataa ttgtaaattg gcgtaagtgg gaatacgtgg tatcatcgga cattgagaaa      3420
     atgtaccgac aaattaaaat aaatcataaa gatcagaaat ttcaatatat attgtggagg      3480
     gatgacccta aaacaacagt taaaacctac aaactaacta cggttactta tggtaccgct      3540
     tccgccccat atttagcaac tagagtatta gcagatgtgg gtgaaaattg tgaaaacaaa      3600
     atgattgggg aaataataaa aaatgatttt tatatggacg acctcatgac aggagcgaat      3660
     tcaatagaag atgccacaac catagttgaa ttaatctcta aagaactagc gaactctggg      3720
     tttaatttga gaaagtgggt ttcaaataac gcaaaaatat tagaaatggt agaaaattcg      3780
     ggagataata aaatagttag catcagagaa gatgaatttg taaaaacctt agggctacaa      3840
     tgggacccta gtaaggacga gtttaaattt acagtatgtt gttctgaacc taaaatgtta      3900
     actaaaagat tcgtcttgtc cacactatca aaaatatttg atccattagg ctggttggca      3960
     ccggtaacga ttgtgggaaa aatctttata caaaaattgt ggacagcagg aatcaattgg      4020
     gatcaagagc tagtgaatga agatcgtaag gaatgggaag aatacaaatc agggttagag      4080
     gcgttgggac aaataagagt ccctagatgg attaatttta aatcagaatt atgtattcaa      4140
     attcatggct ttgcagacgc ttcagaaaaa gcttatgcgg cagtagtata tgccaaggta      4200
     ggatcggaag taatcataat cgctagcaaa agtaaggtga atccgatcaa aaatagaaaa      4260
     acaattccaa aattagaatt atgcgcagca catttgctca gtaagttaat gatgcgcata      4320
     atggaagcca tgaaaaatta caaagtagag ctatatgcat ggagtgattc aaccataacg      4380
     ctagcctgga ttaagaatgg gttaaataag ataaaattta tcaggcgtag aacagatgaa      4440
     attcgggaat taaaaaatgc tgaatggaat catataagat ccgaggataa tccagcagac      4500
     ctagcgtcaa gaggagttag cgcggatcaa ttggtaaatt gcaatctttg gtggagaggg      4560
     cccaaatggt tgactgatcc aaaaagccaa tggccacagt cgccaatcat ggaggaatcc      4620
     ttaatattaa atacactagt aaaaaccaaa gatgacgcga tttacgaatt gatgcaaaag      4680
     ttctcctgca tacataaatt aacacgagta atagcttacg taatacgatt tttaaggatg      4740
     aaaacaagaa caaactctaa cccaaagttt ttaacagcaa aagaattaaa agaagctgaa      4800
     atgatcataa ttaaaaaaca acaggagttt caatttaaca aagaaataaa atacctaaga      4860
     acaggtaaag aaattgaaat tagcagtaaa ataataggtc ttaacccgtt tttagatatt      4920
     aatggaatac ttcgggtagg tggaagactg caaaactcta aagcggcctt tgaagttaag      4980
     catcctataa ttttagacaa aggtaacatt tcgaccttga taataaggga tgctcataaa      5040
     aacacgcttc atggaggtat aaatttaatg agaaactatg ttcaacgcaa atattgggta      5100
     attgggttga aaaatataat aaaaaagcaa ctgcgagaat gtgtaaaatg ttcaaggtat      5160
     cgcaaaatca ccgtagaaca aataatggga aatctgcctg attacagggt aaacatgtcg      5220
     tatcctttct tgaatacggg aatcgattat gcagggccat accttataag atgctccaaa      5280
     aaccgcggtc aaaaaacatt taaaggatat attgcggtat ttgtttgcat ggccacaaag      5340
     gctatccact tagaagtggt tagtgactta acgtctgatg cctttctagc agcatttaag      5400
     cggtttcttg ctagaagagg aaaatgtgcc aacatatatt cagacaatgg aacaaatttt      5460
     gtaggagcat caagaaagtt agatgaggaa ttggaaaagg ccattaggga aaatagtaaa      5520
     atagcatcgc agttacagaa ggaaaggatc cagtggcact ttattccccc ggcaagcccc      5580
     cattttggag ggatatggga agcaggagta aaatcaatga aataccattt aaaacgagta      5640
     attggggaca atgtactaac atatgaagaa atgtctacat tgctttgcca gatagaagca      5700
     gttttaaatt caagaccctt gtactcatcc agcgaagatg tagatgataa tgaggtgcta      5760
     actcctggtc atttcttaat tggaagaccg ctattagatg caatcgaacc caatgacgaa      5820
     attgggaaga ttaataattt agatagatgg agattcatcc aaaaaataaa aagagacttt      5880
     tggaataaat ggaaggatga ttatttgaat accttgcagc aaagatataa atggaaaaga      5940
     aattcttcaa atataaaaaa aggtcaagta gttatcttaa aagatgatag ttgccatcca      6000
     gcgaggtggc ctctagcaaa ggttgaggaa gtccataaag gaaaggacga aaaagttcga      6060
     gttgttaagc ttagggtgca agagaacgtg gtaaccagac cattaaataa aatatgcccc      6120
     ctagctggtg taaatgatct agatgacgca gaagmacgtc aaagtagatc caacccgccc      6180
     aaagcgagaa gttctagatt ttctaagctg ggagtgatgc tggccttaat aatgctttca      6240
     ttatgctgtc agctgacaaa cgcagtcccg gcaatcagag attcaaaata tggttttgaa      6300
     gaaattccca aatcttcgtc catatattta gatccgatgg gagacataga agtggtttca      6360
     tcctcatgga atttagtgat atactacgat atggaagcat atttcgagat gatccataaa      6420
     gggaaaaaca taatcaccaa gatgagatta gtctgtgaaa aacttcatgg gtttgaggat      6480
     cagtgcaacc ttattttaga gaacaccctc aaacagattt tggagttgga ggaaaataat      6540
     aaactcttca tgactcataa taaatcgagg caaaggcggg caccgtttga atttataggt      6600
     tctttatacc atattttgtt tggagtaatg gatgaagatg atcgagttca aacggaagaa      6660
     aatatgaaaa atttgttgaa caatcaagaa agtttaaaag agttaagcga aaaacaaact      6720
     tcgttagtcg attctactac caatattcta aagaaaacta cggaagaagt caatacacac      6780
     ttcagaagta tgaacaaaag aatagaaaat atgactgtaa tactgcaaga gtcgtattac      6840
     gtatacaaag agtctattaa attctttatg gtaacgaagg aattgagtag gctgatcgat      6900
     gaatgcgaaa aaattcaagc aggaatcata agcctgttaa ttgatatcaa ccatggaagg      6960
     cttaatacca acattttacg tccaagtcag cttaaaaatg aaatagctag aattaaggac      7020
     gtcctatccg aaaatttgat tcttccaggg aaaagatcag gtacagaatt aaaagatgtg      7080
     tacactttac ttaccgcaag agggttgttc gtagacaaaa aactaattat waatgcgaaa      7140
     atacctctgt ttggtcgaca tgcgtctaaa ctatataggg ttatttctat tccagttaga      7200
     gcagagaatc aaactattct agctcaaatt gacgcggaat atttagtgta caactttgag      7260
     atagattcat accacttaat gacggagtct acaattgcta aatgccaaaa gtggcaagca      7320
     aacaaaagag tttgtgacgg cagctggcca tggagcaatg gcaacgataa tagttgtcag      7380
     ctaggacccc ttaaacctaa tagaccttcc aattgctttt acaaaccagt cttatcgtca      7440
     aactcatttt gggtggaatt agaaaaaaga agtagttggt tatttaaagt tgaggcaaac      7500
     actaagttaa ggctccaatg tggccactcc aaaatccaga tcattgattt gccggagcaa      7560
     ggcatattaa caatcagttc agaatgtaca gctcggaccg atgataaaat tctaattgct      7620
     cagcatatta ttgaaacgga aagtcaagaa gcattagctt cggcttatat aggagaaata      7680
     aacgagattc cgaaaatagc ttgggaccct ctaaagcctc ctgttatgaa ccatacagca      7740
     gaaatagctc acctggccaa acaaatagaa gacttgaaag cacaaaattt agaattgaaa      7800
     aatatcgact ttcatcatgt gtcaggtcat agctcgttaa ttttaataat gataatcata      7860
     actgtactga ttatatccta tgtaagaaaa ttaaagtcga gaagacaatt gatggctata      7920
     gcattgccaa ccccaatgcc gaatgtttaa aaaaaaaaat gtttatttta tatgattatt      7980
     gtataatgta atggttttat acatatgatt aagtgatcaa tcaaataaaa aagaaaagcc      8040
     tatatctaaa gaaaaaatta aaatatagta taatattaca gtccactaaa atatcgaatg      8100
     aaaaaagttt tcaagatgtc cactaaaaca aaaaattaaa aatatatata atattacagt      8160
     ccactaaaaa atcgaacgga aataataatt aatttaaaaa tgtaaacaca agtcaagcac      8220
     ttttgtggcc ccttgcagga tgttcaaaca ttaagttgaa catgggagct aataaaataa      8280
     cttaaacaat gttaaactat ttaaaaatat gtaatagaat gatataatta acaacatatt      8340
     gttatcgaat aatcataata ataatatttt ctaatattga aaaaagaaat ttataaaatt      8400
     aatacaaaag cagaaataca catatatgta catatatagt ccgctatcta gcgttatcaa      8460
     tggacaatat aatgaattta atatatataa aatgtacacc ttttttgtgg ccctttgcag      8520
     aa                                                                     8522
//
ID   BEL-21_DAn-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DAn_;
KW   BEL-21_DAn-LTR; BEL-21_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-308
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 298-298 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 308 BP; 110 A; 46 C; 63 G; 89 T; 0 other;
     tgttcaagca ttgaacacga taaaaattcc aaacatagaa tgtaggagat cggacccatg        60
     tgaataagtg attaacagca tggtttgaaa gacgatctcc tgcagtctaa ccaaatattt       120
     atgtggtgca cttgaagcac ttaagaaagg gtcacatagc atgtcagcga gcagtccgtt       180
     gataagtagt tttaaataga tttaagattt tcatgtatgt ttcttgtaag agaattgtaa       240
     gaaataaaaa cagttttaaa aaggaactca ttggagtatc acgaatattt acggggctcc       300
     tcttaaca                                                                308
//
ID   BEL-21_DEl-I repbase;    DNA;    INV; 6120 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DEl-I;
KW   BEL-21_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6120
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7088-7088 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Only one copy from the tandem repeat
CC   region was included in concensus reconstruction.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(575..2779,2783..4969)
FT                 /product="BEL-21_DEl-I_1p"
FT                 /translation="MSERTIDLLKKQSGIILEIRQLEAKIGLTELDIGRSE
FT                 ELQKLFITNHTVLLKIGVVDHEYDIIMMVLAQIKLRFEKESQNNKPEVQVI
FT                 PTANVSKIXNMEKEIELPGTSNASRIEQTFRSQVGNLKAYLDETSTLIDNS
FT                 PDFLTIWKNKIEFLWNKIQNLIEQVNTYFEGSVFDEMISDIEFDTQNILTA
FT                 IKNRPSVVNRHADVSMVVKAEELPTLPKIQIPTFFGDSKEWDLFYELFTEL
FT                 IHSREDLSPSLKFNYLKSALKGEARSVVTXLLLGAGENYEATWEFLTKRFE
FT                 NKRKIFSEHMNRLLDMPNLNLDSDRQIKKFIDSINESIYIIKLKAQLSEEV
FT                 DAIFAHIILRKFNKDSLNLYESHVKKTKDMQALSDVMEFLEQRLNSISSLS
FT                 QGEKPVKKVVNTTHSNNSENCACCKLPGHYLVQCYKFKRMNPAERNDWARK
FT                 QICIKCKHKNFKRCTSEQLCLTCNKPHHTLLHFKVPEKVNTCRTTEHVLLA
FT                 TAIIEVKSRNGGYEKLRALIDSGSQSTIISEEASQILQLPKIKNYTEISGV
FT                 SSVKTCFSRHKVSLQMKTNQENKNNLTVDAIILPKLMKALPVQAVNIDTTK
FT                 WDKYRLADPEFYKPSRVDLIIGADLNAHIFKRGVKKIDGLLGQNTEFGWIV
FT                 SGCTKSKGNNTIVATVIECTDLERFWELEEESKDDLEFQICEENFIKTTKK
FT                 DSSGRYVVSMPFKDDQVLGDSKNQAMARFLNLEKKSKDENLKQQYCXFITE
FT                 YIDLGHTIEXKSEXKYYLPHQAVIRDGGLTTKLGVVFDASAKTTNNKSLND
FT                 IMWIGPRVQKDIFDIILKWRKWQYVVSADIEKMYRQINISEKDQEYLHILW
FT                 RNSPKSKIKDFKLTTVTYXTASAPXLATRVLAEIGNRCQGXSIKDVIINDF
FT                 YMDDLMTGSDSIKESKKLVCLISMELEKVVMNLRKWISNEKEIIDKIENAS
FT                 ENKVLSIEETESVKTLGLQXEPFKDEFKFAVKLKNNKKINKRLVLSNXARI
FT                 YDPLGWLSPVTIVGKLFMQRLWLEENDWDKELSTXDLAEWNLYEKNLKSIR
FT                 PRWLKTQTSXAVQLHGFADASEKACAAVVYAKVGESVTLIXXKXKVNPKXN
FT                 RKTIPKLELCAAHLLSLLXSRAKEAIPGITRSFAWSDSTITLAWIRNKNCK
FT                 DKFIRRRTDEILKVKDTAWNHVGSEDNPADIASRGVCATKLXDCSXWWNGP
FT                 KWLSTPEDNWPKLQIDDEVGVNTVIVKSEDTISKLLDKYSSFQKLERVVAW
FT                 ILRFIAMKVKKMSYPHWLTVNELKRARLLIIKKQQERHFIAEILCLEQKKV
FT                 IGLNPFLDKDGILRVGGRLQNSKLRFDVKHPIILDKCHVSRLLIEKAHKET
FT                 MHGGINLMKNQIQRKYWIFRLRDSLKKVLRECVTCARYRQCTGKQIMGNLP
FT                 KCRVNVAYPFLNTGIDYAGPYRLKCSKNRVKKRLKVISQCLYAWQLRQFI"
XX
SQ   Sequence 6120 BP; 2281 A; 937 C; 1257 G; 1619 T; 26 other;
     ttttggtcaa tcgagccgat cattgtgatc cttcgagact ctgtaacttt ccccctgtgg        60
     taagaggttc atagtgatca atcagcacct gaaagtctgt atatagtgct agacacacgc       120
     agcttaaggt agcaaaaaaa aaatctcttg ttgcccccca cccgaggtaa ggaatagaga       180
     tataacaaaa aaaaagcacc ttctagtagt aaataactaa aggtagttta gagattgcca       240
     gtgtcgtgca aggcgtgctt gaggccctta acatcagcga tattgtacgg gaaaacgaaa       300
     agtgccaaaa taaaaacaaa aaaccagcga cgcagcacct tcagccgcat cgacagagcg       360
     gcgacaggac aagcggcggc gactttagca acaacaacaa caactaaaac tacagctgca       420
     acgaccagag cggcgacttc agcagtgact acaacaacta aaacgactac tctggcgacg       480
     gcaacggaag cagctaagtc aaaataaaaa aaattttgta tttacataca tatacataaa       540
     tcctttaaaa aataataaaa ataatttcaa aattatgtcg gaaagaacta tagatttgct       600
     aaagaagcag tccggaatta ttttggaaat aagacagtta gaagcaaaga tagggctaac       660
     agagctagac ataggacgat cagaagagct tcaaaaactc tttattacaa atcatactgt       720
     ccttttaaag atcggcgttg tcgatcatga gtatgacatt attatgatgg tgttggctca       780
     gatcaagtta aggtttgaaa aagagtctca gaataataag ccagaggtac aggttattcc       840
     cacggcaaac gtttctaaga taaasaacat ggaaaaagag attgagttgc caggcacttc       900
     aaacgcatcc aggatagagc agacatttcg aagtcaggta ggcaatttaa aagcatattt       960
     agatgagacg tctactctca tagacaatag tccagatttc cttactatat ggaaaaacaa      1020
     aattgagttt ttatggaata aaatacagaa cctaattgaa caggttaata cctatttcga      1080
     gggttctgtg tttgatgaaa tgataagcga tatcgagttt gatacgcaaa acatattaac      1140
     ggccattaaa aatcgaccca gcgtagttaa taggcatgct gacgtgtcga tggtggtgaa      1200
     ggcagaggaa ttaccaaccc tgcctaaaat acagattccc acattttttg gtgattccaa      1260
     agagtgggat ctgttttacg aactcttcac agagctaatc cactcaagag aggatttaag      1320
     tccatctctt aaatttaact atctgaagtc agcattaaaa ggagaagcca ggagtgttgt      1380
     cactmattta ttgctaggcg cgggcgaaaa ttacgaagcc acttgggaat ttttaaccaa      1440
     gcgtttcgag aataaaagaa agatattctc ggaacatatg aataggcttt tggatatgcc      1500
     caatttaaat ttagattcag ataggcaaat taaaaagttc attgactcaa ttaatgagtc      1560
     aatatatatc ataaaattga aggcacaatt gtccgaagag gtggatgcca tttttgccca      1620
     cataatcctt cgaaaattta ataaagactc gttgaattta tatgaaagtc atgtcaaaaa      1680
     gacaaaagac atgcaagctc tttcggatgt tatggaattt ttagagcaaa ggctcaattc      1740
     catatcatca ttgtcacaag gagagaaacc tgtaaagaaa gtcgtaaata caacgcatag      1800
     taataatagc gaaaattgtg cgtgttgtaa attaccggga cattatttag tccagtgcta      1860
     caaatttaaa agaatgaatc cagcagagag aaatgactgg gcaagaaaac aaatttgtat      1920
     aaaatgtaaa cataagaatt ttaagagatg cacaagcgag cagctttgct tgacttgcaa      1980
     caaacctcac catacgttac ttcattttaa agttccagaa aaagtgaaca catgtagaac      2040
     aacggagcac gtattattag ccacagccat aattgaggtc aaatcaagaa atggaggcta      2100
     tgaaaaatta agggctttga ttgacagtgg gtctcaaagt acgataattt cagaggaagc      2160
     ttcacaaatt ctccaattac ctaaaattaa aaattatacg gagattagtg gagtttcctc      2220
     agttaaaaca tgcttttcaa ggcacaaagt tagcttacaa atgaaaacaa accaagaaaa      2280
     taaaaataat ttgacagtag atgcgattat tcttccaaaa ttaatgaagg cactaccagt      2340
     acaagcggtt aatattgata cgacaaagtg ggacaaatac cgacttgctg atcccgaatt      2400
     ttataagcca agtagagtag acctaataat aggtgcagat ctaaacgcgc acatttttaa      2460
     aagaggagtt aaaaaaatag acggactcct aggtcagaat actgagttcg ggtggatagt      2520
     gtcgggctgc acaaagtcaa aaggcaataa cacaatagtt gcaactgtaa tcgagtgtac      2580
     ggatttggaa aggttttggg aattagaaga agagagtaaa gatgatttag aatttcagat      2640
     atgcgaagaa aatttcataa aaacaactaa aaaagattca tcaggtcgat atgtggtctc      2700
     aatgcctttt aaagatgatc aggttttagg ggattcaaaa aaccaagcaa tggcacggtt      2760
     tttaaactta gagaaaaaat gaagtaaaga tgaaaatcta aaacaacaat attgtwagtt      2820
     tataactgaa tatatagact taggtcatac gattgaatmt aagtctgaag kwaaatatta      2880
     cttgccgcat caagccgtaa ttagggatgg gggcttaaca acaaagttag gagtkgtttt      2940
     tgatgcgtct gcaaaaacaa ctaataataa aagccttaac gacattatgt ggattgggcc      3000
     tcgagtgcaa aaagatattt tcgatattat tctaaaatgg cgtaaatggc agtatgtagt      3060
     ttcagcagac attgaaaaaa tgtaccgaca aattaatatt tcggaaaaag atcaagaata      3120
     tttgcatata ctttggagaa attcccccaa aagcaaaata aaagatttta agctwaccac      3180
     agttacatat gstacggcat cagctccgta wttagcaacc agggtgttag ctgagatagg      3240
     aaatcgatgt cagggtawgt caattaaaga tgtgattata aacgatttct atatggatga      3300
     tttaatgact ggatcagaca gcattaaaga gtccaagaaa ttagtatgct tgatttcaat      3360
     ggagctggag aaagtagtaa tgaatttaag aaaatggatc tccaatgaga aagaaattat      3420
     tgataaaatt gaaaatgcga gtgaaaataa agtactgagc atagaggaaa cggaatcagt      3480
     taaaactttg ggtcttcaat gkgaaccttt taaagatgag tttaaatttg cagttaagtt      3540
     gaaaaacaat aaaaaaataa ataagaggct agtgctwtca aaccwcgcaa gaatatatga      3600
     tccattagga tggttgtcgc cagtgactat agtgggaaaa ttatttatgc aaaggctttg      3660
     gctagaagaa aacgattggg ataaagaatt atctactwac gatttagctg agtggaatct      3720
     gtacgagaaa aatttaaaat caattaggcc caggtggtta aaaacgcaga ctagcatkgc      3780
     ggttcagcta cacgggttcg ctgatgcctc cgaaaaagcg tgtgcagcag tcgtatatgc      3840
     aaaagtagga gaatccgtta cgttaatags aagsaaaagw aaagtwaacc ctaagaawaa      3900
     taggaagact atccctaagt tagaactttg cgcagcccat cttttgagcc tattgatsag      3960
     tagagcgaag gaagctattc ctggcataac aaggagtttt gcatggagtg attctaccat      4020
     tacattagcg tggatacgaa ataagaactg caaagataaa tttattagac gtagaactga      4080
     cgaaatttta aaagtaaagg atacagcatg gaatcatgta ggatctgagg ataacccagc      4140
     agatattgcc tcaagaggcg tctgtgctac gaaattawaa gattgttcgc wgtggtggaa      4200
     tgggcccaaa tggctctcaa caccggagga caactggcca aagttacaaa tagatgatga      4260
     agtaggagta aatacggtga tagtaaaatc cgaagacacc atttctaagt tgctggataa      4320
     atattcaagt tttcaaaagt tggaacgagt cgtagcttgg atattacgat ttatcgccat      4380
     gaaagtcaag aagatgtcat acccacattg gctgacagta aatgaattaa aaagggcccg      4440
     attattaatt attaaaaaac agcaggaacg acattttatt gcagagatat tatgcctaga      4500
     gcagaagaag gttatagggc tgaatccgtt cttagacaaa gatggtattc taagggtagg      4560
     tggtaggttg caaaatagca agttacgatt tgatgtgaag cacccgataa tattagataa      4620
     atgccacgtg tcacgacttt taattgaaaa ggctcataag gagacaatgc atggtggaat      4680
     caatttaatg aaaaaccaaa tccaaaggaa gtattggata tttaggttaa gggattctct      4740
     gaagaaagta ttgagagagt gtgtcacttg tgcgagatat aggcaatgta caggtaaaca      4800
     aataatgggt aacctgccaa agtgcagagt gaatgtagca tacccatttt taaatacagg      4860
     tatagactat gcagggccgt atcgcctaaa atgttcgaaa aatcgtgtca aaaaacgttt      4920
     aaaggttata tcccagtgtt tgtatgcatg gcaactaagg caattcattt agaagttgtg      4980
     agtgatttaa cttctgatgc atttgtagca gcattactgg gtaaaattsa gaaagaaaag      5040
     tagttggttg tttaaagttt cgataggtac taaaataaga gwacaatgta ctgggtctca      5100
     aatggagttc aatcagggat tataagcctt taaattgata ttaatcacgg cagactaaac      5160
     acaaacatac ttaggctaaa tcagctaaaa attaagattg cgaagattca tgaaaatttg      5220
     tcggaaaatc taataattcc agggaaaaga tcaggaacgg aactaaagga agtatatacc      5280
     ttattaacag cgaggtgatt gtttatagat aataaattaa tcatcactgc aaaggtgcct      5340
     ttgtttagta ggcatccgtc taaattgttt agactaattc cgttgcctat taggaatgta      5400
     gataaaataa taatggtaca cataacttcg gaatatttaa ttgtctgaac tgcctgagca      5460
     agggatttta agtattgtgc cgtattgtac tgcaagaacg gatgacaaaa tgttaatagc      5520
     ccttcataat attcaatcgg gaaatgaaga gacactgtca ataccataca taggagaggt      5580
     tagtgaagtt ccgagaataa cgtgggatcc gttgaagcta acgccattaa atatacaatt      5640
     gaaatggata aattaaaaaa agaaattaaa gagcttaaag aaaaccatcc acaattaaag      5700
     gatttgcatt tccatcatat ttccggacat gctggtcata tattgtcatt aatagttatg      5760
     ggaattttga taatatacct tgaaaaaact tttaggcaaa gattagaagg cccgttgcaa      5820
     ggaatttaaa gttaaatagt tgtttgcaca attgtcaaaa ataaaatata ttgttaaact      5880
     aaacgtaaag cttgccgggc ctttggcaga atgttcgtca aacacgaagt attataaatt      5940
     ttattaatta agaaagaata aatcaagcca atgttagagt taagctatac gagaattaca      6000
     tgtctaagct gaaatatata acacaaaaag agcaagatga gtttaaatga gtttacagtc      6060
     cactaaatcg ttaactattc aacattaaaa atatataatt cttgccggcc tttggcagta      6120
//
ID   BEL-21_DEl-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-353
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7092-7092 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5-bp TSD.
XX
SQ   Sequence 353 BP; 114 A; 65 C; 72 G; 102 T; 0 other;
     tgttcaaaca tgaacacgca gatatacaaa tgtatgttta ggtagcggaa ttgtagccgc        60
     accaaaggta tcacatgtgt gcatacctaa aacaactagg taaaaaggtt gtaaaatgac       120
     ctcctgcgag tggtcaccac atgttcagtg ataagtgcga tcggagtaat tgctatctcc       180
     tctatcgccc ttagcatgtt tcccggaatc ggggatatac cgattcttag gtctaaagat       240
     aagaatagtt gtaagtctca tgttagctat ttaagtcgaa gatattctta aataaaacca       300
     gtttgaaata tcaactcaac aaaggaagac gtgttttatt ggacgctctt tca              353
//
ID   BEL-21_DTa-I repbase;    DNA;    INV; 8171 BP.
XX
AC   .
XX
DT   12-MAY-2012 (Rel. 17.08, Created)
DT   12-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8171
RA   Kojima N.F. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1603-1603 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identity to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1007..8032
FT                 /product="BEL-21_DTa-I_1p"
FT                 /note="DUF1759 , DUF1758, RT_pepA17, Peptidase_A17,
FT                 rve."
FT                 /translation="MLSEKTIELLQKQSDLTKQIRALEAKVHLSLPEFQKS
FT                 LDLQKIFIANHSALVKIGLVDHEYFTLKHYDAMMMVLEKLKIQFERDSGKA
FT                 AGSSDQRVAEVGEVKHMARAAMLKEDFNANAGLLRNYLDDTFNNLNSDLVS
FT                 LEVRKNKIQFWKAKTFGLIEEVRSCFESREFERLVSELEFDVNNIIDAIDK
FT                 KLSKETNLVRESITVKEEELPKLPKIKIPTFFGDSKEWDLFNELFMELIHT
FT                 RENLTTAVKFSYLKSALKGEAKNVVSHLLLGTGDNYEAAWELLTKRYENRR
FT                 KIFSEHINRLMDLPNLNLESNKQIKTFIDTINESIYIIKLKAQLSEDVDAV
FT                 FAHIILRKFNKDSLNLYESHVKKTKEIQALSDVMEFLEQRLNSISSFPQEN
FT                 KPMRKEFQSKSSKENCAYCNLPTHNITQCYXFKGMEPAERNDWVKKRHICL
FT                 KCLRHSSNKKCTNEILCLNCKKPHHTLLHINNNREKVNTCRTTEQALLATA
FT                 LIHVKSASGGYEKLRALIDSGSQSTIISEEASQILKLPKIKNYTEISGVSS
FT                 IKKCVSKHKIKLNIKPLKEKKNELVVEAIVLPKLMKALPMRSLNIDKTRWQ
FT                 NYPLADPEFNKPGRVDLIIGADLYAKILQKGVIKIDGLLGQNTDFGWIVSG
FT                 CTKSKGSNTVVATTIECKDLERFWELEEESKEDLESEICEENFTKTTHIDS
FT                 SGRYVVKMPFKEEQTLGESKGQAMARFLNLEKKLTKNLNLKEQYCKFMTEY
FT                 MSLGHMVEANSEGKYYLPHQAVIRDASLTTKLRVVFDASAKTTNNKCLNDI
FT                 MWIGPRVQKDIFDIILKWRRWQYVVSADIEKMYRQINIAESDQEFLHVLWR
FT                 DSPKNKIKDYKLTTVTYGTASAPYLAKRVLADIGDKCKDPLISGIIKNDFY
FT                 MDDLMTGSDSIKESKEIVKQVSLELEKVGMNLRKWISNHQEIIENVENAGE
FT                 NKTLSIEENESVKALGLQWEPFKDEFKFCVKFTISKKINKRLVLSNLAKIY
FT                 DPLGWLSPVTIVGKLFMQRLWLEEINWDQELDVNDLNEWKLYEENLKFLED
FT                 IRIPRWLKTHVNFPVQLHGFADASEKAYAAVVYAKVEESVTLIASKSKVNP
FT                 KKNRKTIPKLELCAAHLLSKLMQRTKESISNIAESFAWSDSTITLAWIRNG
FT                 NCKDKFIRRRTDDIKKLMDTEWSHVKSEDNPADIASRGICATKLKDCSIWW
FT                 NGPKWLSMSKDHWPKFQLEQKEEVVVSTVITSTENNISKLLERYSSFQKLE
FT                 RIVAFVLRFIGMKVKKASYPTFLTVDELKSARILIIKKQQERQFMSEIVCL
FT                 RDGKEIESKSKILGLHPFLDTDGVLRVGGRLQNSNMRFDVKHPIILDKCHL
FT                 SDLIIKKAHAETLHGGINLMRNQVQRVYWIFRLRDSLKKILRECVTCARYR
FT                 QCTGKQLMGNLPNYRVNASYPFLNTGIDYAGPYHLKCSKNRGQKTFKGYIS
FT                 VFVCMATKAIHLEAVSDLTSDAFLAALKRFISRRGICTNIYSDNGTNFVGA
FT                 ARKLDEEFLEAIKHNTGVASEIKNDKIHWHFIPPAGPHFGGIWEAGVKSVK
FT                 YHLKRVIGDNILTYEEMATLLCQIEAVLNSRPLYTTGDDIEDNEVLTPGHF
FT                 LIGRPPLDVVESIQDNDKIGSLDRWKLIQKMKRDFWMKWKDEYLYTLQQRY
FT                 KWKKGVPNIEKGQVVLLKDENCHPARWPMGKVEEVHKGKDDKVRVVKVKTQ
FT                 EASFTRPITKICPLIGVKQAEDVMEKAVENKRRVSPRFSKLGTVMVMLLLT
FT                 LFCQVSQAATIKGENKSFTIQNINKTAAIYLDPLGDVEIISASWNLVIYYN
FT                 MDAYFHMIRKSNVLIQKMRIVCGKLHSFEDQCNIVLDNMQNQLIELKENNN
FT                 LFMMQERSRSKRAPFEFMGSLYHILYGIMDEDDRKQLEENMRNLLDNQHNL
FT                 NELVQKQTSVVDSTTNLLKKTTEDINDNFRNMHXRIENMTEVLKESYYVYK
FT                 ESINFFMITKQLNSLIEEGERVQAAIISLLIDINHGRLNTNILKPNQLQNE
FT                 ISKIQSSLSETLVLPGKRTGTELKEVYTLLTARGLFIENKLIINAKIPLFS
FT                 RHPSKLFRIIPLPIQNEDRMIMVHITSEYLIYNFEIDSYHMMSESTLSQCQ
FT                 RWQQNKRICQGSWPWNSANDNSCEVQPLKPNRVSNCIYKTVMDSSSYWTEL
FT                 EKKSSWLFKVPFNSKIRVQCTNAEIQLLDLPTQGILSIATDCTARTDDRIL
FT                 IAHHNIQSESEEVLSSSYVGDISQVPKVVWDPLKLNSVNHTVEIARLNKEI
FT                 KYLKENHIKLKDLHFHHISGHASLGLGLIITIIXVIYAIRKYATRQRLQAI
FT                 TFAGPLQGVL"
XX
SQ   Sequence 8171 BP; 3121 A; 1245 C; 1596 G; 2204 T; 5 other;
     ttttggtcat tcgagccttt gattccttgc ggaataattg gccagactac tctgcagttt        60
     tcccccacca gtggtaagag actcagaaat attctgcacc ttaaagattc tgtcaagtgc       120
     tagacacttg cagctaaagg ttgcaaacag attcacacga ttgttttccc ccaccagtgg       180
     taagagacaa aagtgttgaa caaaaaaaaa aagcataaag atatataaag agtctttttt       240
     gttttttaaa gcaccttaaa gattctgttt tttttaaaaa cagctaaagg ttgctaccta       300
     ttgtgcgttt ccgaggccat aacatcggaa aaataaaaac ataaaaagtg tgtgtttttt       360
     tataamcaaa aataaaaatt ttttgtttat aaggcgtgtt tgaggccaac atcagacaaa       420
     taaaaaaaca aaaaaaaata atttgtgaaa agtgccaaca aattaacact tgtgaaaatc       480
     aaaaaaagaa tagacacaag tgaaataaaa aatttctaaa aaaaatccaa taagttggat       540
     taatatagaa aaagtgccta caaatgctaa aagccaaaga gctaagctaa ataaagtgcc       600
     tataaatgct aaaagccaaa gagctaagca aaataaagtg ccaacaatgc tgaaaaagca       660
     ttaaaaatta caaaaacctg agaacaaaac aacaacaaaa attacatctc aaagacaaaa       720
     ttgaaaaaca acaacaaaaa cgaaatcaac tctaaaaaga agaaaagaag accagcaacc       780
     ccagcaagac gacttcagca gcacaagcat caccagcatc accgacttca aggaacaagc       840
     aacccaacat atctacatcg agcatcaagc atcgctcaca ccatcgactt ctcagcacat       900
     acggcgtcca gtaaaagaaa tcaagataag ttagaaataa aaattattcc taaatttact       960
     taatttaatt ttaaataaaa caactatata ttacgaaaaa aaaaaaatgt tgtccgaaaa      1020
     gaccattgag ctcttgcaga agcagtccga tctaactaaa caaattagag ctttagaggc      1080
     aaaagtgcac ttatcgctac cagagtttca aaaatctttg gatctacaaa aaatttttat      1140
     tgctaatcat agtgctttag taaagatagg tctagttgac catgagtact ttacattaaa      1200
     acactatgat gcgatgatga tggtactaga aaaactgaag atacagtttg aaagggactc      1260
     tggcaaagca gcaggaagca gcgatcaaag agttgcagaa gtaggcgaag ttaaacacat      1320
     ggcgagggct gctatgttga aggaagattt taatgcaaat gctgggcttt taaggaatta      1380
     tttagatgat acctttaata atttaaatag cgatctcgtt tccctggaag taagaaaaaa      1440
     taaaattcaa ttttggaagg ctaaaacttt tggtttaatt gaggaagtaa gaagttgttt      1500
     tgaaagcagg gaatttgaaa gattggttag cgaattagaa ttcgatgtca ataacattat      1560
     agatgctata gacaaaaaac ttagcaagga aacaaatctt gttagggaat ctataacggt      1620
     aaaggaagag gaattaccga agctaccaaa aataaagata cccactttct ttggtgattc      1680
     caaagaatgg gatctattta acgagctgtt tatggaactc attcatacaa gagagaacct      1740
     aaccactgcc gttaaattta gttatctcaa atcagcgtta aaaggagaag ccaagaatgt      1800
     ggtttcccat ttactgctag gcactgggga taattatgaa gccgcttggg agttgctaac      1860
     caagcggtat gaaaacagaa gaaaaatttt ctctgaacat atcaataggc ttatggattt      1920
     acccaatttg aatttggaat ccaataagca aatcaaaaca tttattgaca caattaatga      1980
     gtcaatttat ataatcaaac taaaggcaca attatccgaa gatgtggatg cagtgtttgc      2040
     tcacataata cttcggaaat ttaacaagga ttctctaaat ttatatgaga gccatgtaaa      2100
     aaagacaaag gaaattcagg cactttctga tgtcatggag ttcttagagc aaagactcaa      2160
     ctccatttcc tcttttccac aggaaaataa acctatgaga aaagagtttc aaagcaaaag      2220
     cagcaaagaa aattgtgctt attgtaattt accaacccat aatataacgc agtgttatam      2280
     atttaagggt atggaaccag cagaaagaaa tgactgggta aaaaaaagac acatttgttt      2340
     gaagtgtctg aggcattcaa gcaataaaaa gtgcacaaat gaaattcttt gcttgaattg      2400
     caagaaaccg caccacacgc ttcttcacat caataataat agagaaaaag tgaatacgtg      2460
     taggacgacg gaacaagccc tattggccac agcattgatt catgtgaaat cagctagtgg      2520
     aggctacgaa aaactcagag cactgattga cagtggatct cagagtacaa taatatcaga      2580
     ggaagcttca caaattctta agttaccaaa aataaagaat tatactgaga ttagtggagt      2640
     ttcctcgata aaaaaatgcg tatcaaagca taaaataaag ctaaacatta aacctttaaa      2700
     agaaaagaaa aatgagttag tagtggaggc aattgtcctt ccgaaattaa tgaaagcgtt      2760
     gccaatgcgc tcattaaata ttgataaaac gaggtggcaa aactacccgt tagccgatcc      2820
     cgaatttaac aagccaggtc gagtggacct aattatagga gccgatctat atgctaaaat      2880
     tcttcagaaa ggggttataa agatagacgg tcttcttggt caaaacacag actttggttg      2940
     gatagtgtct ggatgcacca aatcgaaagg aagtaacacg gtagttgcga ccacgataga      3000
     gtgcaaggac ttggaaagat tctgggaatt ggaagaagaa agcaaggagg atttagagtc      3060
     cgaaatatgt gaagaaaatt tcacgaaaac aacacacata gactcttcag gacgatatgt      3120
     tgtgaagatg ccctttaagg aagagcaaac cttaggggaa tctaaaggcc aagccatggc      3180
     aagatttttg aacttggaga aaaaactaac aaaaaatcta aacctaaaag agcagtattg      3240
     caagtttatg acagaataca tgtctttagg gcatatggtt gaggcaaact cagaaggtaa      3300
     atattattta ccacatcaag ccgtaattag agatgcgagc ttaaccacaa aattaagggt      3360
     tgtttttgat gcgtcggcaa aaacaaccaa taataaatgt ctgaatgata ttatgtggat      3420
     tggacctaga gttcaaaaag atattttcga catcatttta aaatggcgca gatggcagta      3480
     tgtagtttca gcggacattg aaaaaatgta ccgtcaaata aatatagcag aaagcgatca      3540
     agaatttttg catgtcttgt ggagggattc tccaaaaaat aaaataaaag actacaaatt      3600
     aactacagtt acctatggta ctgcttcggc tccgtattta gcgaaaagag tgctagcaga      3660
     tataggagat aaatgtaaag atccactaat cagtggaatt ataaaaaatg atttctacat      3720
     ggatgattta atgacaggat cagacagcat taaagaatcc aaagaaatcg ttaaacaggt      3780
     ctcattggag ctagaaaaag tagggatgaa tttgaggaaa tggatctcaa atcatcaaga      3840
     gattattgaa aatgtcgaaa atgctggaga aaacaaaacg ttaagcattg aagagaatga      3900
     gtccgtaaag gctttagggc ttcaatggga accttttaag gatgaattta agttttgcgt      3960
     taaatttact atcagtaaaa aaattaataa aaggctagta ttgtcgaacc tagcaaaaat      4020
     atacgatcca ttaggatggc tatcaccagt tactattgtt ggtaaattgt ttatgcaaag      4080
     actttggtta gaggaaataa attgggatca agaactagat gtgaatgatt taaacgagtg      4140
     gaagttgtat gaagaaaatt taaaattttt ggaagatatt aggattccga gatggttaaa      4200
     gacacatgta aattttccag ttcagctcca cggttttgca gatgcttctg aaaaagcgta      4260
     cgcggcagtt gtatatgcaa aggtagaaga atcggtcacg ttaatagcta gtaaaagtaa      4320
     agtaaatcct aagaaaaaca ggaagactat tcctaagtta gagctttgcg cagcccatct      4380
     tttaagcaaa ttaatgcaga gaacaaagga atcaatttct aacatagcgg aaagttttgc      4440
     atggagcgat tccaccatta cattagcttg gatacgtaat gggaactgca aagataaatt      4500
     tattagacgt agaactgatg atattaaaaa actaatggat acagaatgga gtcacgtgaa      4560
     gtcggaagat aacccggcgg atattgcctc cagaggtatt tgtgccacca aattaaaaga      4620
     ttgctcaatt tggtggaatg ggccaaaatg gctttcgatg tctaaagacc attggccaaa      4680
     gtttcaattg gaacaaaaag aagaagtagt tgttagtact gtaatcacga gtacagagaa      4740
     caacatatct aaattgcttg aaagatattc aagttttcaa aaattagagc ggattgtagc      4800
     ctttgtacta agatttattg gtatgaaagt taaaaaggct tcatatccaa cctttctgac      4860
     agttgatgaa ttgaaaagcg ctagaatact gattattaaa aaacaacagg agcgtcaatt      4920
     tatgtcagaa atagtttgct tgagagacgg taaagaaatc gaatccaaga gtaagatatt      4980
     agggttgcac ccattcttag acacagatgg agttcttaga gtgggtggaa ggctgcaaaa      5040
     tagcaatatg cgatttgatg tcaagcaccc aataatatta gataaatgcc acctatctga      5100
     tttaataatt aaaaaggctc acgcagagac cttacatggt ggaattaacc taatgagaaa      5160
     ccaagtacaa agggtatatt ggatatttag gctaagagac tccctcaaga aaatattacg      5220
     agaatgtgtt acttgtgcga gatatcgaca atgtacaggt aaacaattaa tgggtaattt      5280
     accaaattac agagtaaatg cttcatatcc cttccttaat acaggaatag actatgcggg      5340
     accatatcac ctgaaatgct caaaaaatcg cgggcaaaag acatttaaag gttatatttc      5400
     agtgtttgtg tgtatggcta ctaaagccat tcacttagaa gctgttagtg acttaacgtc      5460
     cgatgcattt ttagcagcat taaaaagatt tatatctaga agaggaatat gtactaatat      5520
     ttattcggat aatggtacta atttcgtagg tgctgctcgg aagttggatg aagaatttct      5580
     agaggccatt aaacataata ctggagtagc ctcagaaatt aaaaacgaca aaattcattg      5640
     gcattttatc ccgccggcag gacctcactt cggaggtatt tgggaagcag gtgttaaatc      5700
     cgttaaatat catttaaaac gggtaattgg ggataatatt ttgacttacg aagaaatggc      5760
     aactctgtta tgtcagatag aagcggtgct gaattcgaga cccttatata ctacggggga      5820
     cgatattgaa gataacgaag ttctaacacc aggccacttt ttaataggta gaccaccatt      5880
     agatgtggtt gagtcaatcc aagacaatga taaaattggt agccttgata ggtggaaact      5940
     gattcaaaaa atgaaaagag atttttggat gaagtggaag gacgaatatc tttacacact      6000
     gcagcaaaga tataaatgga aaaagggagt tccaaatata gaaaaagggc aggtagtgct      6060
     cttaaaagat gaaaattgtc acccagccag atggccaatg ggaaaagtag aggaggttca      6120
     caagggtaaa gatgataaag ttcgagttgt aaaagttaag acccaagaag cttcatttac      6180
     aagaccaata acaaaaattt gtcctttaat tggtgtaaaa caagccgagg atgttatgga      6240
     aaaggcagtt gaaaacaaaa gaagagtatc accaagattt tctaaattag gcaccgtaat      6300
     ggtaatgcta ttgcttacat tgttctgtca agtctcacaa gcagcaacaa taaaaggcga      6360
     gaataaatca tttactattc aaaatataaa taagacggct gccatatatt tagatccact      6420
     aggagatgta gaaattataa gcgcatcatg gaatctggtg atttactata atatggatgc      6480
     ctattttcac atgattagaa aaagtaatgt gctgatacag aagatgagaa ttgtttgcgg      6540
     taagcttcat agcttcgagg atcaatgcaa tatagtgttg gataatatgc aaaatcagtt      6600
     aatagaacta aaagaaaata ataatctatt tatgatgcaa gagagatcaa gaagcaaacg      6660
     tgctcccttc gaattcatgg gatcattata tcacatttta tatgggataa tggatgaaga      6720
     tgataggaag caactagaag aaaatatgag aaatctgtta gacaatcagc acaatttaaa      6780
     tgaattagtt cagaagcaga cttcggtggt agattccact acaaatttgt taaagaaaac      6840
     gactgaagat attaacgata actttaggaa tatgcatama agaattgaaa atatgacaga      6900
     agttcttaag gagagttatt acgtttataa agagtcgatt aatttcttta tgataactaa      6960
     acaacttaac tcattgattg aagaaggtga aagggtgcag gcagcaatca ttagtctgtt      7020
     aattgacatt aatcatggta gattaaacac aaacatcctt aagccaaatc aattacaaaa      7080
     tgagatatcc aaaattcaaa gtagtctttc cgaaacatta gttcttccag ggaaaaggac      7140
     aggtactgag cttaaggaag tctatacgct attgacagct aggggattat ttatcgaaaa      7200
     taaattaatt ataaatgcta aaattcctct gtttagtaga catccatcta aactgtttag      7260
     aattattcct ttaccaatac aaaatgaaga cagaatgatt atggttcata ttacttcgga      7320
     atatttaatw tataattttg aaatagattc ttatcatatg atgtccgaat caactttaag      7380
     tcagtgtcaa agatggcagc aaaataagag aatttgccag ggaagttggc cttggaattc      7440
     tgcgaatgac aattcttgtg aagtacaacc acttaagcca aatagagttt cgaactgtat      7500
     atacaaaaca gtaatggatt cttcatctta ttggacagag ctagaaaaga aaagtagttg      7560
     gctgtttaag gttcccttca attccaagat aagagtacag tgtacgaatg cagaaattca      7620
     gttacttgat ttgccaacgc agggaattct aagtattgct acagattgta cagctagaac      7680
     ggatgatagg attttgattg cccatcataa tattcaatct gaaagtgaag aagtattatc      7740
     atcatcgtat gtaggagata ttagtcaagt tccaaaggtt gtttgggatc cattgaaatt      7800
     gaactctgtt aatcatactg ttgagattgc acgcctaaat aaagaaatta aatatttaaa      7860
     agagaatcat attaaattaa aagatttgca ttttcatcat atttccggac atgcttcttt      7920
     agggctcgga ttaattataa cgataatcwt ggtaatatat gccataagaa aatatgctac      7980
     aaggcaacga ttgcaagcca ttactttcgc cggaccgttg caaggtgtct tataataagt      8040
     taaaagcaaa taaataaata tatcgaatta aacaaataaa atacagtcca ctaatattat      8100
     gtttgcattg ttaacgaaag aatttacaaa ataatatcct gtacacctca ccttgccggc      8160
     ccttggcaga a                                                           8171
//
ID   BEL-21_DTa-LTR repbase;    DNA;    INV; 387 BP.
XX
AC   .
XX
DT   12-MAY-2012 (Rel. 17.08, Created)
DT   12-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-387
RA   Kojima N.F. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1604-1604 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identity to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 387 BP; 126 A; 71 C; 76 G; 114 T; 0 other;
     tgttcaagaa gaacactaat tgtcataaat ttaagagttt acgagctctg tcaatgtcaa        60
     tatgtaaatc tatctagagc cgtaaataat gatctgttat tttaaaccta caagggtgca       120
     gtgccgaaca attgtaatct taagtacagg ccacttgagc ctgaccataa atatagttct       180
     cacactgtac aaagggtcgc cttgcgggag gccgttgata aggctcccgc tcaggcaaac       240
     agatgtggtc tctgcgtaga ccatagataa gtatatcata agattttcat gttagttacg       300
     taagcgaaga cttagaagaa ataaaatcag tttttataca gaactcaaac gtgaaggttg       360
     ttttccttat tacaggaatc cctttca                                           387
//
ID   BEL-21_DWil-I repbase;    DNA;    INV; 3490 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3490
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1799-1799 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1383..3488
FT                 /product="BEL-21_DWil-I_1p"
FT                 /note="DUF1759 and DUF1758."
FT                 /translation="MSLSDFVAVCEALTAFEAREAQALADDVPLVSIKIHL
FT                 DQLKSLWAKVEAEFSRCYKALTAQKNDDSPKHIATIKAKHDYCYMVYVRGG
FT                 TLFGERIEQLSTKMAPPPVRLSVDSTHQSHTVPPCEVEIFNGDSLAWPTFR
FT                 DLFTAIFIHNPSLTQVEKLYHLSCKTRGEARAIVSRSPLTNEGFQSAWDNL
FT                 TARYENNRLLIMSQAKQLLQIPAVTQESGKALRELQTSIQGCLTGLELSGA
FT                 RTDNWDILLIAICTSKMPKSTLLLWEQSVPNKTAVSSWDDLNRFLTERHRV
FT                 LEATDVLQPSSSGQTFPSVSRKPTARAQAFSAQVQESSAPDACIISNPASS
FT                 DSSSSPHVNVGSYFASTRNTGLLGTARVTIHHRGQQFPIRALIDMGSEASF
FT                 ISQRMFELINPPSCKVSTSIRGIGQCDAGSGDKVCRLQISPPDEPLRRFQA
FT                 VAVVLPSVAEALPSRAVPNKVKQDSLDLPLADPQFHQRAPVDLVLGAELLP
FT                 TILGERIIKNVGDSFVGIETMFGWVLCGSVTGKSRRSRSTSSSRPKMSLRT
FT                 AAPSDLERSSNCFRCRVCQGAHALRQCRQFRGLRADDRLRVVLSNGYCPNC
FT                 LAHEHSNGSCRSTAGCHRCGKQHHTLLHIDSSVAYIQPKEQRPERHPPFIR
FT                 TSIQRSSAIVPPTPSASKVPPPSPPVSWRSRTLPSPILRHVQRGNCNLLQG
FT                 GR"
XX
SQ   Sequence 3490 BP; 937 A; 880 C; 675 G; 998 T; 0 other;
     ttggtccttc gagccggata tccttccgct attccagctt gcatcggcgg aattcctgat        60
     aagtacaaca tttcttatta tatcccatta caaacttaca aaagtgtgag gtttcccgct       120
     cttccatagc gacctacaca cttctgtata cttgtatgta catacctgac ctgttccaag       180
     ggttacatgg tatttcccga tcatttttgt gtttaggaag tgcatttttt tttcattctt       240
     cgaaattctg attgtccaaa agtccaattg catagcaata catatgtatg tatatacaca       300
     catatacata catacataca tacatgtaaa aacagctgtt ttctaacctg caagtaaagg       360
     tgtttaataa tcgagaatga atttataaag taccacttac ctttacttaa agtgtaaagt       420
     acacttcacg ggctgatcat tagtccatcg gcataaatta tttatgtcaa ataattttta       480
     catccataca tacatatgta catacaattt aatttttgcc gcggtaacca ctctcatatg       540
     tacatatgta catacataca tatgtccaca tacaatttga attcacccac acaaaattaa       600
     ttgcagccac tccgattggc tttccgcaat ttaataattc gaaacctaca taattaaagc       660
     aggaaatcgt gattttcgtt aaacaattta caattaatta aattcacaaa acataaaaca       720
     cggcagaaca gctgactccc gatcagtgct gacactcaag tctcatcagt gctgacactt       780
     gagccaagcc gtgactcggt cacgacatcc atattttcct tcgtgatttt cgtattgtgc       840
     aaaaatattt caatcgactg attgaattta attcgcaaac tattttctaa agaaaaataa       900
     aaacctttta tttatatgga attaatattt ttgcttgtct tggtgcattt tgatcttttc       960
     ctcacagatc catgaaattg atcttgtccg tttaatgaat taattccaag tttttttttt      1020
     ccttcgttga aaagttatcg gcactcccaa tcctactgat ctcaattttt ccatattttt      1080
     aaatactctt ataaatttta acatttttcc acattgtata aattttaata tccaagtgat      1140
     tatatatcct tataattatt cccacaactg cgaggaaaat tataaatcct tctaatttca      1200
     tttatgcgat ctttgcttat tcattgtggt cattaaaaag aggagacatt tctccttctc      1260
     actcctcctc tatccttaaa ttatacagtc cacttacagc ttcgtttcga tctcctcgct      1320
     tgagagctct aagtccacgt ttgttgccat tcgattcgta atagcccaga ggacactcta      1380
     cgatgtctct ttccgacttt gttgccgtgt gcgaggcatt aacggcgttc gaggctcgcg      1440
     aggcccaggc tttagctgac gatgtgccac tcgtctctat taaaatacac ttagaccagc      1500
     ttaagtcact ttgggcaaaa gtcgaggcag agttttcacg atgctataaa gccttgacgg      1560
     ctcaaaagaa cgacgatagt ccgaagcaca tagctacaat taaagctaaa catgattatt      1620
     gttatatggt atatgtgcga ggcgggactt tgtttggaga gcgaatcgag cagttgtcca      1680
     caaaaatggc tcccccacca gtcaggctct ccgtcgattc cacccatcaa agccacacag      1740
     ttcccccgtg cgaagtcgaa atctttaacg gagacagcct ggcttggcct acattccgtg      1800
     atttgtttac cgcgattttt atccataatc caagcctaac acaagtggag aaactttacc      1860
     acttaagttg caaaactcgc ggtgaagcca gagccattgt ttctaggtca cccttgacca      1920
     atgaagggtt ccagtccgcg tgggataacc tcactgcgcg atacgaaaat aatcgattat      1980
     tgattatgag ccaagccaag cagcttctac agatcccagc tgtaacacaa gagtctggca      2040
     aagcgttgag agaattgcag acctcaattc aaggttgctt aaccggtctt gagctttccg      2100
     gagctcgtac agacaattgg gatatccttc ttatagcaat ctgtacgagc aaaatgccca      2160
     aatccaccct tctgttgtgg gaacagtccg ttccaaataa gaccgccgtc tcatcctggg      2220
     acgaccttaa tcgattccta actgaacgcc accgtgtact agaggccaca gatgtccttc      2280
     aaccaagctc tagcggtcag acctttccat ccgtaagccg aaaacctacg gcacgagctc      2340
     aggccttttc cgctcaagta caagagagct cagcacctga tgcttgtata atttcgaatc      2400
     ctgcgtcctc cgattcttcc agcagccctc atgtaaacgt gggaagttac ttcgcctcca      2460
     ctcgcaacac tggcctcctg ggtactgcaa gggtaactat tcatcatcgt ggccagcagt      2520
     ttccaatccg cgctttgatt gatatgggat ccgaagcgtc ctttatttcc caaagaatgt      2580
     ttgaattgat taatcctcca agctgcaaag tatcaactag cattcgcggc attgggcaat      2640
     gcgatgctgg tagcggcgac aaagtgtgcc gcttacagat ttctcctcct gacgaaccgc      2700
     tgcgacggtt ccaagcagtc gccgtggtgc tgcctagtgt agctgaagca cttccgtccc      2760
     gcgccgtccc gaataaggtg aagcaggatt cgcttgacct tccgctcgct gatccgcaat      2820
     ttcaccaaag agctcctgtg gatttggtgc ttggagccga gctccttccc actatccttg      2880
     gggaacgaat catcaagaat gttggtgatt ccttcgtggg gatcgagacg atgttcggat      2940
     gggttctctg tggatccgtt actggaaaat ccagaaggtc tcggtccacc tcctccagca      3000
     ggccgaagat gtctctaagg acagcagcac catccgattt agaacgcagt tctaattgct      3060
     tcaggtgccg cgtttgtcaa ggggcacacg cgctccgtca gtgccgacag tttcgaggac      3120
     tacgagctga cgacaggcta cgggtagtct tgagcaacgg atactgcccg aactgtttgg      3180
     ctcatgagca ttccaatggt tcctgcagga gcacagcagg atgccatcga tgtggcaagc      3240
     aacaccacac gctcttgcac atcgacagct ctgtcgccta catccaaccc aaagagcaaa      3300
     gacccgaaag gcacccgcct ttcattcgga cttctatcca gaggtcatca gccatcgtgc      3360
     cgcctactcc atctgcatcc aaagttcccc ctccatctcc acccgtgtct tggcgatcca      3420
     gaacgctgcc atcccccatc cttagacatg tccagcgagg caattgcaac ttgttgcaag      3480
     gggggcggta                                                             3490
//
ID   BEL-21_DWil-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-364
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1800-1800 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 364 BP; 103 A; 98 C; 70 G; 93 T; 0 other;
     tgttcacgcc accgggtgaa cagcagagag tgaggggtag ggttttttcc aaaaccgaat        60
     tcggtcacac tgaggagggt gacgaagggt tctcctgtaa atcgccatat tcaatccagt       120
     acgaacatct aacccgaaca cccgttcttt cattgctttc gataatatac ctgttttcaa       180
     cccgaaacat tctcgtgtgt gtcgggacac ctaacatgta acataaatag aaataaacca       240
     gaattaatct taaacgaagt tctcgcgcgt tttaattgca ttactcactc accagacccc       300
     tgcagaaatt ggcacccgcc aatcacttca ggcttattcg ggtccttccg cccctccaca       360
     aaca                                                                    364
//
ID   BEL-21_SiCu-I repbase;    DNA;    INV; 5575 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5575
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4995-4995 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..5544
FT                 /product="BEL-21_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase and DUF5641."
FT                 /translation="MALEQMKKQRRPHRGLLTKAVNEVDAMFKKGDPATEQ
FT                 VKARLQVLCQIYNTIEEWDDKIKVQMVDDNLDDDAVEKEYEDIHKYQISFL
FT                 EMKNKVEDYVDSQQESNPPPGARSSSPTGSFQSMSTTGAGYHTTNVRLPVI
FT                 ELAKFNGELKEWLGFWSQFKKIHEDSNMEGCDKLHYLKQSMVPGTTAHQIV
FT                 ASYQQTSENYPEVVKSLLAEYGDDDVLLQVYVRELLKLVITNVNAKEKIPL
FT                 ESLVIQLDTQLRALETLKLEDADPATWLFPLVESSLPEEILKNWQHSPLAE
FT                 IDGSKDNPPRSRLKILMEFLKKEVAIKKKIRLAQSGFQEETKKKGGKGNKN
FT                 EDKLPTLAGFHIGDSTSSSCIFCGKGHESRDCFTGIRMSFEEKKKHVHEKN
FT                 ACFACLRRGHTANKCRAKVMCATCGKRHYAIMCGSKIDKEQGTQQQPSGMR
FT                 PESTPKSRSAGWAQPKGVSFQDNSTHSNNGRQKSILANRSMWSIPPEDNSA
FT                 DNNPQNLQDSSNLVCTTQVKLMTLLVDIVGDNSVKTVRAFLDPGSQRSYIL
FT                 DCTAEEMGMRPFGEETATHSVFGGLRTKTIKHKKFDVILRQHGGSYMTELS
FT                 MRGSQKICNPIPRIPRTSELFKQLKKNKIYVTDVESDSERFLPEIEILIGG
FT                 DIYGGLLNGRVIQLNDGITAQETSLGWVLSGGKESSGREDTVGMMVLTMTA
FT                 MDAPIEDLWKLETIGIHDDATSKTAAQREQEEKDKFMQTIRRKEDGRYVVK
FT                 LPFQEGHPHLPDNKQVAFKRLERTTAKLLQTGKFEAYDSLLKDWANEFIEE
FT                 VPAENVEVDAHYIPHRPVFKDSLTTPVRPVFDCSCKIGKAPSLNDCLQKGS
FT                 NYVLLIPELLLRFREKVIGITADIRKAFQMIEIQLKDRKYLRFFWWKDYQQ
FT                 KLLMEYQHKRVVFGATCSPFILGAVLEFHLKRTSPPDDVIAKKLLEGFYVD
FT                 NYVGSEDTPAEYYNLRKAATRLLADAKMDLRMWMSNIDEFEDPETHTVSIL
FT                 GVQWDRKTDSLFVPVRAIEKPEKLTKRALLSTIQKVFDPLGILSPALIPMK
FT                 RILQKQWICNRKWDEELPYDEAKAFNDWFLQLNKLEDIRIPRLATSGVKDR
FT                 DKWSLHTFTDASVHSFACAVFLRVETEKEPEVQLLMSKARVSPVKRMTIPR
FT                 AELMGCLIGSRLAVTVKKALKIEEIEEYYWSDSTTSLAWIKREYNCDVFVR
FT                 NRVKEIREKTSREDWRHVPGVMNPADLPSRGCSPAELLKSKWWEGPNWLKS
FT                 PPSSWPAAAEEEDEDAIMAEVKKSTPVITACLLDGVTRDYTFAQRVRIMAW
FT                 VKRFIQNCRGKKNSAEHLLENEVREAELAVLKEVQDESFHDPEEFKKEFRS
FT                 PALTITRGETGLLRLKTRLVRREDLADFKAPVILPSRHPLVRKIIMEEHLR
FT                 NCHGGVNFLMSRLREKYWILQSRRTIKSVISCCFRCRRYAAKPTVVEEGPL
FT                 PEDRIKDAEPFQVTGVDLAGPLILKNNQKAWIVLYTCAVYRAISLDIVTSL
FT                 TTAAFIKSMGKFVEKHGRPEVVYSDNGTNFRGADNLFKELDWESISAEEDL
FT                 KPIHWKFNPPSAAWWGGWWERLIRTVKDLLRKTLGKAVVTQLELAMQLKRI
FT                 EEVMNNRPLTYVSEDPSDLEPLTPAMFLKTPSRCAFPEAETEKGKLQTRYN
FT                 YMKTLREELKTRFRSEYLALLITKPMKLTRKLEKGELVFIGSDLRKRMEWQ
FT                 LGRILDFIPGNQDPVNRLARVKTAEKEIIIPVQRLHPLELDINLPEGKATR
FT                 SGRKVQVPERLGVGI"
XX
SQ   Sequence 5575 BP; 1694 A; 1166 C; 1440 G; 1275 T; 0 other;
     tttggtgacc ccgacgtgat tagtgacgtt aattagtggc atcaaagaag acacctgttc        60
     gagaggattt caccagtgaa gagtgtaaat caaccaacga gttcgagaaa ggatatcctg       120
     ctgtcaaaag aagacaatca tcagttcgag aaaggatatc cagcttaaca gaagaacctt       180
     atcaagatgg cgttggagca gatgaagaaa caacgacgtc cccatcgagg tctactgacc       240
     aaggcagtca atgaggtgga cgccatgttc aagaaaggag atccagccac tgaacaggtc       300
     aaagctagac tgcaggttct ctgtcaaatc tacaacacga ttgaagaatg ggacgacaaa       360
     attaaagtcc aaatggtaga tgacaatctg gatgatgacg ctgtggaaaa ggagtatgag       420
     gatatccata aatatcaaat cagctttctg gaaatgaaga acaaagtgga ggattatgtg       480
     gactctcaac aagaatcaaa tcctccacca ggagcacgtt catcgtcacc caccggaagt       540
     ttccagagta tgagcactac tggagctgga taccatacaa ccaacgtgcg gcttccagtg       600
     attgaactcg ccaagtttaa tggcgaactg aaggagtggc taggcttctg gtcacaattt       660
     aagaagatcc atgaggacag caatatggaa ggatgtgaca aactccacta ccttaaacag       720
     agcatggtgc ctggcacaac agcgcaccaa attgtggcga gttaccagca gacatcagag       780
     aattacccag aggtcgtgaa atccctttta gctgagtacg gagatgacga cgtccttctg       840
     caagtatatg ttcgagagct gctcaagctt gtaatcacca acgtgaatgc caaggagaag       900
     atcccattgg agtcattggt cattcagctg gatactcaat taagggccct tgaaacgctg       960
     aaacttgaag acgcggatcc tgctacttgg cttttcccac ttgtggagtc cagtttgccc      1020
     gaggagatac ttaaaaactg gcaacacagt ccacttgcag agattgatgg aagcaaagat      1080
     aacccacccc gttccagact gaagattctg atggagtttt taaagaaaga agtagccatt      1140
     aaaaagaaga taaggttagc ccagagtgga ttccaggaag agacaaagaa gaaaggcggt      1200
     aaaggaaaca agaatgaaga taagctgcca actttagctg gattccacat cggggattct      1260
     acaagttcct cctgtatctt ctgtggaaaa gggcatgaaa gtcgcgattg ttttactggc      1320
     ataaggatgt catttgagga gaaaaagaag catgtgcacg agaagaacgc ctgctttgcc      1380
     tgcctgagac gaggacacac cgccaacaaa tgcagagcca aggtgatgtg tgcaacatgt      1440
     ggaaagaggc attacgcaat tatgtgcggc tccaaaattg ataaggagca aggcacccag      1500
     cagcaacctt cggggatgag accggaatcg actccaaaat cgaggagtgc gggttgggct      1560
     cagccgaagg gcgtatcttt ccaggataac agcacacatt ccaacaatgg gaggcagaag      1620
     tccatcttgg caaaccgttc catgtggagt attccaccag aagacaattc agctgacaat      1680
     aatccccaga atttgcagga ttcgagcaac ctagtttgta caacacaggt gaagttgatg      1740
     acgttgctcg tagatattgt tggtgataat tcagtgaaga cagtgcgggc gttccttgat      1800
     cctggctccc aacgttcgta cattttagat tgtactgctg aagaaatggg aatgcgaccc      1860
     tttggagaag aaactgccac gcactcagtt tttggaggct taaggactaa gaccatcaag      1920
     cacaagaagt ttgacgttat ccttcgtcaa catggtggca gctacatgac agagttaagc      1980
     atgagaggga gccagaagat atgcaaccct atccctcgga tacccaggac ctcagagctc      2040
     ttcaaacagt tgaagaaaaa taagatttat gtcactgacg tggaaagtga cagtgagcgg      2100
     ttccttcccg agatcgagat cctcatcggc ggagacattt atggaggcct ccttaatggc      2160
     agagtcattc agctgaatga tgggatcacc gcacaggaaa ccagcttggg atgggtactc      2220
     tctgggggca aggagtcgag tggcagagaa gatacagtgg gcatgatggt cttaacaatg      2280
     acagcgatgg atgctcccat tgaggattta tggaaactgg agaccatcgg cattcatgat      2340
     gacgctacta gcaaaaccgc tgctcaacga gaacaagagg aaaaggataa gttcatgcag      2400
     actatccgaa ggaaggaaga tgggaggtat gtcgtcaagt tacctttcca agaaggacat      2460
     ccccaccttc cagataacaa gcaagtagct ttcaagagac tggagagaac aacagcaaag      2520
     ctactccaga cgggaaaatt cgaggcatac gactcccttt tgaaggactg ggcaaacgag      2580
     tttattgagg aggttccagc tgaaaatgtt gaagttgatg cgcattacat tccacaccgg      2640
     cctgttttta aggacagctt gactacaccc gtgagaccag tatttgattg ttcctgcaag      2700
     attggaaagg cgccttccct caatgactgt ttgcagaaag gaagcaacta cgttttgttg      2760
     attcctgagt tactattgcg cttccgcgag aaagttattg gaattactgc agacatccgg      2820
     aaggcgttcc aaatgatcga gatccagctg aaggacagga aatacttgag attcttttgg      2880
     tggaaggatt accaacagaa gctgctaatg gagtaccagc ataaacgagt ggtcttcgga      2940
     gcaacttgca gtccatttat tcttggagct gttttggaat tccacctaaa aaggacatcc      3000
     ccaccagacg atgtcatcgc taagaagctg ttggagggat tttatgtgga caactatgtt      3060
     ggttccgaag atactccagc tgaatattat aacctaagaa aagcagctac ccgactactt      3120
     gctgacgcca aaatggacct ccggatgtgg atgagtaaca ttgacgaatt tgaagaccct      3180
     gagactcaca ccgtatccat tcttggtgtt cagtgggacc ggaaaacgga tagcttgttc      3240
     gtgccagtga gagccataga gaaacctgag aagctaacca agagggcctt gctgagtacc      3300
     attcagaaag ttttcgaccc tttgggaatt ctctcgccag cgcttatacc catgaagaga      3360
     atcctccaga agcagtggat ctgtaaccgg aagtgggatg aagaactacc ttacgacgaa      3420
     gcaaaagcgt tcaacgattg gtttctacag ctgaataaac ttgaagacat taggattccc      3480
     agacttgcaa cctcaggagt caaggacaga gacaagtggt cactccacac attcacagat      3540
     gccagtgttc atagttttgc ctgcgcagta ttcctacgtg tggagacaga aaaggagcct      3600
     gaagtccagt tgctgatgag taaagctcgc gtttcaccgg tcaagaggat gacaattccc      3660
     cgagcggagc tgatgggatg ccttattggg agcagattag ccgttactgt gaagaaggca      3720
     ctcaagatcg aagagattga agaatattat tggagcgatt ctaccacgtc tttggcctgg      3780
     atcaagcgtg agtacaactg cgacgtgttt gtgaggaatc gagttaagga aatccgagag      3840
     aaaacaagta gagaagactg gagacatgtt cctggagtca tgaatccagc ggatcttcct      3900
     tcacgcggct gttctccagc tgaacttctg aagtcgaaat ggtgggaggg acccaattgg      3960
     ctgaagtccc ctccaagttc ctggcctgct gcggctgaag aagaagatga agatgccatc      4020
     atggctgaag tcaagaagtc aacccctgtc atcaccgcat gtttattgga tggggtaact      4080
     agagattaca cgtttgccca gagagtgagg attatggctt gggtcaaacg tttcatccag      4140
     aactgcaggg gaaagaagaa ttcagctgaa catttattag aaaatgaagt tcgagaagct      4200
     gagctcgcag ttctaaagga agtgcaagat gaatcattcc atgatcctga ggaattcaag      4260
     aaggagtttc ggtctccagc attaacgata acacggggcg aaactggact tcttcgtctg      4320
     aaaacgagat tggtgaggag agaagacctt gctgacttca aggcacctgt cattttaccg      4380
     agtagacatc ccttggtgcg gaagatcatt atggaggagc acttgcggaa ttgccacgga      4440
     ggagtcaact ttttgatgtc acgtctgagg gaaaaatact ggattcttca atcaaggagg      4500
     accatcaaaa gcgtgataag ctgttgtttc cgttgccgaa ggtacgctgc caagcctaca      4560
     gttgtagagg aaggaccttt gccagaggac aggatcaagg atgccgagcc ctttcaagta      4620
     actggagtcg accttgctgg cccattgatc ctgaaaaata atcagaaggc ttggattgtg      4680
     ctgtacacgt gcgctgtgta tcgagctatt tctttggaca tcgttacatc attaactaca      4740
     gcagcgttca ttaagtcaat gggcaaattt gtggagaaac acggaagacc agaagtcgtc      4800
     tacagcgata acggcaccaa ttttcgtggt gccgacaacc tatttaaaga gctggattgg      4860
     gagtcaattt cagctgaaga ggaccttaaa ccaattcatt ggaaatttaa tcctccttct      4920
     gcagcctggt ggggaggatg gtgggagcga cttatcagaa ccgtgaagga tcttctccgc      4980
     aaaacactag gaaaagcggt ggttacgcaa ttggagttgg caatgcagct gaagagaatt      5040
     gaggaggtca tgaataatcg tccactgacc tatgtctccg aagatccttc cgacttggag      5100
     ccgctcaccc ctgcaatgtt cctgaaaacg ccgtcaagat gtgcatttcc tgaagctgaa      5160
     accgagaagg ggaaattaca gacgcggtac aactacatga agacattaag agaagagctg      5220
     aagacccgtt tccgcagtga atacctggcc ctgctcatta ccaagccgat gaagctgaca      5280
     aggaagttag agaaaggaga gctggtgttc atcgggtctg atctacgaaa acgaatggaa      5340
     tggcagcttg gaagaatttt ggactttatt cctggaaatc aagatcctgt gaacagatta      5400
     gctcgtgtga agactgcaga gaaggagatc attatccccg tacaacgtct tcacccactg      5460
     gaattggata tcaatttacc ggaaggaaag gctacccgtt ccggaaggaa ggtacaagtt      5520
     ccagaacgac taggagtggg gatatgaaaa atacatacgt attttggtgg gagaa           5575
//
ID   BEL-21_SiCu-LTR repbase;    DNA;    INV; 737 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-737
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5018-5018 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 737 BP; 205 A; 122 C; 107 G; 303 T; 0 other;
     tgttgggagt taatttatat tttaggtttt acattttata tttgtcaatt taattctatt        60
     gttgcagttt tgtaaaacta cccacatatt tgaaactacc cacatatttg aaactaccca       120
     caatttgtaa agtacccaca atttgtaacc caactattaa ccaactttta accaacttgt       180
     aacccagccg taatcaacct taaaccaact tttgccatag ttggggcaat atgagattat       240
     caatactttc cctcgttttt cattgcaact tgcagctcag ttcattctag aaacttgagc       300
     ttgcatttcg tcgttgcatc atattatgta ttttttgtta agctgtaaac ttatgtattt       360
     ttctgtacaa ttttgtccgt tcattctttt tcattatcac tctcgacttt ggagaagtga       420
     gttgttggtt ttttttattc ttgttcaact ttcgtagagt gcacagcaca aagttgtaat       480
     aattgttgtt aattattatt gagtttcttt aataaagata attgagatta ttaattactt       540
     gagcgttagt agtttatgct actcctggtt tattttactt ttaaatatcc agctgaattg       600
     atttaactat ttttgaggat agtttatgct atcagagctt gccattaatt catcgtttac       660
     taatcacatt aaaagagcac gttttatttt tgagcacggg aacactgatt gaggttatca       720
     ttctgttagt ttcaaca                                                      737
//
ID   BEL-21_SpEx-I repbase;    DNA;    INV; 6002 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6002
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6901-6901 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..5798
FT                 /product="BEL-21_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MDSLMDIQDDVKSKIDKAIINFKKCPKDRLTLSYIET
FT                 RLENLEQQWQLFHNTHVKIISEVKKSDLYSSKYHKDCVYDEVEELYVQFKS
FT                 ALKELIRLNKCVPSNENDSGPGLSSSCKEENNFRLPEIKIPMFSGKYQEWL
FT                 TFRDLFLGLIHNNNKLNDAQKLYYLKGYLTGDAEHLLRNVQVTADNYSTSW
FT                 TKLESMYNNKRFLANGIVKSLFNQKAMIGESATDIKKLLNTTSDCLESIKN
FT                 LDIDLGSILIIHIITEKLDKVTRRAWELKVSSDYKEELPTFDDLKEFLVNR
FT                 FRALENLETKVERVPKTTRALHVVKDKGVSCAFCAGEHRISSCPKFINEST
FT                 ETRRNFVLKNKLCFICLLSNHSVKFCKNTLKCQVCKRRHHTLLHSQGVFGS
FT                 EVGEGSSAARAESSSVTYEGNRDANQAEGSKPHVVSCLATGSRKTVLLATA
FT                 LVKAESRNGTYHTVRALLDQGSQGSFVTEALVQYLGLKKKPSKNKVVGVGD
FT                 KGTTSTAVVVINLHSRVNPSFQIKVNAYVLKSVTSLLPSAKVARLEWVDLN
FT                 DNDLADPEYFIPNRIDVLLGAEVYSQVIQHGVKKNANGTLLAQETTLGWVL
FT                 SGAFEIKQGVDSHSNITVMHTSIQDDELLRKFWELEEPSATKGMLTEEETK
FT                 CEELFKSTTTRNKDGRYIVRLPLRDTYLVDRGGDSKGIAEKRLKGLEARLA
FT                 KNYKLKVEYGNVIQEYLNLNHMVEVSDKDNIKGVYLPHHAVIREDKETTKV
FT                 RVVFDASCKYSNGRSLNDDLMIGPSLQDDLRHIIMRWRVHRICIVADIVKM
FT                 YRQVLVNRQDTPLQRILWRNNPESPIKEYELITVTFGTASAPYLAVRALQQ
FT                 LAVDEGGDNLDVAKIIVRDFYMDDLLSGAETEEEAFKIYTDITKILGKGGF
FT                 QLQKWKSNCQELLNRIRDGSDGALKFKMDESTKILGLTWNARDDCFQYSLE
FT                 LKPIAGPVTKRKIIADIARLFDPLGWLAPSIIVAKTFIQKLWLAGLQWDEE
FT                 VPNNLLKEWVTYRKNLASLVDLKIPRWLNTGNKVKQELYGFSDASKLAYAA
FT                 VVYLRVVDEMGLVHVSLIASKTKVAPVKQVSIPRLELCGAVLLTKLILEVA
FT                 EVMNIKKDNLYAFTDSEVVLAWLNSHPSRWKTFVANRVSEILSNLDTHHWA
FT                 HVASKQNPADCASRGICPSELSSVSLWWEGPNFLREQVVQSKRPKQLVTHL
FT                 EEIKVHTSTLDVSIWHRFSKLSRMIRVIAYCRRFLNLRKNGTLSKGSLSLK
FT                 ELENAMEVCVKRCQEEEFANEFDKLKSNKFEKKNAKLNSLNIFLDPKGIIR
FT                 VGGRLEMSQLKYERVHPILIPKESVLTKLLIADAHEKTMHGGPQLMITYLR
FT                 SKYWIIGIKTLAKRYVGRCVRCIRYTAKVRTQLMGQLPSSRVTPAKPFLRS
FT                 GVDYAGPISIRVSKGRGTRSYKGYIALFVCMVTRAVHLEAVSDLSTKGFLA
FT                 AFKRFVARRGRCAELHSDNGTNFVGAARELLHLFNEERSACNPELADELVN
FT                 NGTEWHFIPPQSPNFGGLWEAGVRSTKHHLKRVIGNSTLTFEEISTVLAQI
FT                 EACLNSRPLSYIEDQDKLTILTPGHFLVGEPLIVPPDLNYEKSNVSSLRRW
FT                 HLLQKMMQEFWRRWSHDYLHQFLQRHKWQNKTPEPSVGDVVLVKEDNMPPG
FT                 RWLLGRVEVKHQGSDGLTRVVTIRTKMTTIKRPTSKVCVLPVADK"
XX
SQ   Sequence 6002 BP; 1959 A; 929 C; 1404 G; 1706 T; 4 other;
     tggtccttcg gagccggatt ggtcgggagt gttgtgacgg gttccggagg tggtagattc        60
     taccacccta cgcttcgata ctgggcagtg gatcgctgtc cagagcagcc cttcagtggg       120
     taccaggtga gaggtsccag gagctgaagg tggaagaccg gttggcgcag ggagcatcca       180
     gtggagcgtg gtgcagcaat actggaggca gcagcagccg gagggcgaag caagggagca       240
     gagcaggaag gtgtcgtccg cggtcacaga gggcgccact ggtatggcat gttgacgtct       300
     aagtgwcagt gagtgtttgg tgaaaaaatc gtgagtactt tcaatgttat tctggaagaa       360
     tctaataaag gcagkgcatt agattagaat tgtgatttgg acttgtgata attttaagaa       420
     aaagttgttt ggacggggag tctatgtcca aattcgtata gaaattgaac ttaaaaagac       480
     ttgtaaaaat ttcaatgcaa attgagtttt gtgttcggaa aaagtgcgag aagatacaat       540
     ttaatggact ttaaggttag gataatatta tattcttcca ctttttattt gtgctgtagt       600
     attagattct attgtttgta atttgtgttg tgtctacata atattgtgtt tacaaaatgg       660
     attcgttaat ggatatccaa gatgatgtta aaagcaaaat tgataaggct attattaatt       720
     ttaaaaaatg cccgaaagat cgactcactc tatcgtatat tgaaacacgt ttagaaaatt       780
     tagaacaaca atggcaactt tttcataata cacatgttaa aataataagt gaagttaaaa       840
     agtcagattt atatagctcc aaatatcata aagattgtgt ttatgacgag gtagaggaat       900
     tatatgtgca atttaaaagt gctctgaagg agcttattag attaaataaa tgtgtaccta       960
     gtaatgaaaa tgatagtgga ccgggcctta gtagtagttg taaagaagaa aataattttc      1020
     gtttgccgga gattaaaata ccaatgtttt ctggaaaata tcaggagtgg ctaaccttta      1080
     gggacttatt tttgggatta attcataata ataataaatt gaatgatgca cagaaattat      1140
     attacttgaa gggatattta accggagatg ctgaacacct attaagaaat gtacaggtga      1200
     cagcagataa ttatagtaca agttggacaa aattagagtc catgtacaat aataagagat      1260
     ttttggcaaa cgggatagtt aaatctttat ttaatcaaaa ggctatgata ggagagtccg      1320
     ctacggatat taaaaagctc ctgaatacaa ctagtgattg tttagaatca attaaaaatt      1380
     tagatataga tcttggctca attttgatta tacatattat aactgagaag cttgataaag      1440
     taactagaag ggcatgggag ttgaaggtat catcggatta taaggaagaa cttcctactt      1500
     tcgatgactt aaaagaattt ttggttaacc gatttagggc tttagagaat ctagaaacga      1560
     aagtagagag ggtcccaaag actacacggg cattacatgt agttaaagat aaaggggtat      1620
     cttgtgcctt ttgtgcaggt gagcacagaa taagttcctg tccaaaattt ataaatgaaa      1680
     gtaccgaaac tcggaggaac tttgttctaa agaacaagtt atgtttcatc tgcctgctca      1740
     gcaaccactc tgttaagttt tgtaaaaaca ctctcaagtg ccaggtgtgc aaacgccgcc      1800
     accacacatt gttacactca caaggtgttt ttgggtcgga agttggtgag ggtagtagtg      1860
     ctgctcgcgc ggaatcctca tcggtaactt atgagggaaa tagggacgct aatcaagcgg      1920
     aaggatcaaa accacatgta gtctcatgtc ttgcgacagg aagcaggaaa actgtattat      1980
     tagccacagc tttagttaaa gctgagtcga ggaatgggac ttatcatacg gttagggcat      2040
     tattggacca gggatcacag ggttcttttg ttacggaagc tctggttcaa tatttaggtt      2100
     taaagaaaaa accttcaaaa aacaaggtag taggtgtagg agataagggt actacgtcga      2160
     cggccgtagt agttattaat cttcattcga gagtaaatcc atcttttcaa ataaaagtca      2220
     atgcctatgt tctgaagtca gtaacatcac ttctcccatc tgctaaagta gctaggttag      2280
     aatgggtgga tttgaacgat aacgatttgg ctgatccgga gtactttata cctaatagaa      2340
     tcgatgttct attgggcgct gaagtataca gccaagtcat tcagcatggt gttaaaaaga      2400
     atgcgaacgg cactctatta gcgcaagaaa ccactttagg atgggtgttg tcgggtgcgt      2460
     tcgaaattaa acaaggtgta gattctcact caaacattac cgtgatgcat accagtatcc      2520
     aggatgatga attgttgaga aaattctggg aattagagga accatctgca acaaaaggaa      2580
     tgctcacgga agaagaaact aaatgtgagg aactatttaa atcaacgacg acaaggaata      2640
     aggacggcag atatatagtg aggttgccgt tacgggatac atacctggtc gataggggcg      2700
     gtgattccaa ggggatagct gaaaaaagac taaaagggtt agaagcaaga ttagcaaaaa      2760
     attataaatt aaaggtcgag tacggtaatg tgatacaaga atatttaaat ctcaatcaca      2820
     tggtagaagt atcagataaa gataatataa aaggtgttta cttacctcat cacgctgtca      2880
     tccgtgagga taaggaaaca acaaaggtgc gtgttgtatt tgatgcttcc tgtaaataca      2940
     gcaacgggcg gtcacttaat gatgatctaa tgattggtcc atctttgcaa gatgatcttc      3000
     gtcatatcat tatgcgctgg agggtacatc gaatttgtat agtagctgat atagtgaaaa      3060
     tgtaccgaca agtgttagtt aataggcaag atactccatt acaacgaata ctttggcgga      3120
     ataaccctga aagcccaata aaggagtatg aattgataac ggttacattc ggaacagcct      3180
     cggcaccata cttagctgtg agggctcttc aacagcttgc agttgatgaa ggtggggata      3240
     atttagatgt agctaaaata attgtaagag atttttatat ggatgattta ttgtcaggag      3300
     ctgaaactga agaagaggct tttaaaattt atacggacat aactaaaatt ctaggtaaag      3360
     gtggatttca attacaaaaa tggaaaagca attgtcaaga gctattaaat agaattagag      3420
     atggaagtga cggagcatta aagttcaaaa tggatgaatc aacaaaaatc ttaggactta      3480
     cctggaatgc gcgcgacgat tgcttccaat actctctgga actaaagcca atagctggac      3540
     ctgtaacaaa aaggaaaatt attgcggata ttgctcgctt gtttgatccg ttgggttggt      3600
     tagcaccaag cataatagtt gcaaaaacat ttattcaaaa gctgtggtta gcagggttgc      3660
     aatgggatga agaagttcca aataatttat tgaaagaatg ggttacttac cgtaaaaatt      3720
     tagcttcttt agttgatcta aaaataccac gttggttgaa cacgggaaat aaggtaaaac      3780
     aagagttata cggattttct gatgcttcta agttagcata cgcagccgtt gtgtacctta      3840
     gagtagttga tgaaatgggt ttggtacacg tttctttaat agcttcgaaa acgaaggtag      3900
     caccggtaaa gcaagtgtca attcctagac tcgagctttg cggggcagta cttttaacca      3960
     agcttatttt ggaggttgcc gaagttatga atataaaaaa ggataatctt tacgcgttta      4020
     cagatagcga agtcgtattg gcttggttga atagtcatcc aagtcgttgg aagactttcg      4080
     ttgccaatag agtatcggag atattgagca atttggatac acaccattgg gctcatgtag      4140
     catcgaaaca aaatccagca gattgtgctt cacgtgggat atgcccgtcg gaactttcaa      4200
     gcgtctctct ctggtgggaa ggcccaaatt ttctaaggga acaggtagtt caatctaaaa      4260
     gacctaaaca gcttgtcaca catttggaag aaattaaggt acatacgagt actttagatg      4320
     tttcaatttg gcatcgattt tctaagttat caagaatgat tcgtgttata gcttattgtc      4380
     gtaggttttt gaatttaaga aaaaatggga cattaagtaa gggttcgtta tctttaaagg      4440
     aattagagaa cgcaatggaa gtatgtgtta aaagatgcca ggaagaagaa tttgctaatg      4500
     aattcgataa gttaaaaagc aataaatttg agaaaaaaaa cgcgaaactc aattcattaa      4560
     atatattttt agatccaaag ggaataatta gagtaggggg taggcttgag atgtctcaat      4620
     taaagtacga aagagtacat cccatcctaa tacctaagga gtcagttctc actaagctat      4680
     taatagctga cgctcatgag aaaacaatgc acggtggtcc tcaattaatg atcacctatt      4740
     tacggtccaa atactggatt ataggtataa aaacgttggc aaaaagatat gtgggacgct      4800
     gtgtgaggtg tatacgatac acagccaagg tcagaacaca acttatgggg cagttaccat      4860
     cctctcgggt aacaccagct aaaccttttc tccggagcgg agtggattac gctggcccta      4920
     taagtattag agtgtccaag ggtcgtggta ccaggtcgta caaaggctat atagctttgt      4980
     ttgtatgcat ggtcacacgt gcggtgcatt tggaagccgt tagcgattta agcacaaagg      5040
     gttttttggc ggctttcaag cgctttgtgg ctagacgggg tcgatgtgca gaactacata      5100
     gtgacaatgg gacaaatttt gtaggcgccg cgcgcgagtt acttcattta ttcaatgaag      5160
     aaaggtcagc atgtaatccc gaattagcag atgaactagt gaacaatggt acggaatggc      5220
     attttatccc ccctcagtca cccaattttg gaggactttg ggaagccggg gtaagatcca      5280
     cgaaacatca ccttaagcga gtgattggca attcaacgct gacctttgaa gagatttcaa      5340
     cggttttggc tcaaattgaa gcgtgcctca attcgagacc attgtcatat attgaggatc      5400
     aggacaaatt gaccattttg acgccaggtc attttctagt aggggagcca ctcatagtac      5460
     cgcccgattt aaactatgaa aaatcaaatg ttagcagttt aaggcgatgg catctgcttc      5520
     aaaaaatgat gcaggagttt tggcgaagat ggtcgcatga ctaccttcac caatttttac      5580
     aaagacacaa atggcaaaac aaaacgcccg aaccatctgt aggtgatgta gttctagtca      5640
     aggaggacaa tatgcctcct ggcaggtggt tgttaggcag agtggaagtt aagcatcagg      5700
     gttcagatgg gttaactcgt gtagtcacaa taaggacaaa aatgaccacg ataaaaagac      5760
     ctacatcaaa ggtctgtgtg ttacctgtgg cagataaata aattcaagac taatttaagt      5820
     aattaaggat tagaaatatt ttatttaagt tagtgtaatt ggtttttaaa tatctgtatt      5880
     atgtttaaga agtaaatagt tttatktttt ttgggctgta ataattattt tatttttttg      5940
     ggctgaaata aacatgtata tcagatgaag gacatttgcc ataatgtcct tggtgggcgg      6000
     aa                                                                     6002
//
ID   BEL-21_SpEx-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-252
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6929-6929 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 252 BP; 70 A; 41 C; 57 G; 83 T; 1 other;
     tgtttatgta ataaaaggtc aacggaatca tagtgcgatt taatatggaa tacaaagttg        60
     tacgttagct cgatagatgg cgttgggatc gagatagatc gcgctatggt ttcgttaccg       120
     gcgataatat aggtgtcgaa tgatttaatt gttttggtga gcagcaagca ttgtacatta       180
     ctttattata cgcgcttaat aagtaagtca gtgtattwat tatccaccct ctcccgagtc       240
     gaccttcgtt ca                                                           252
//
ID   BEL-21_TrNi-I repbase;    DNA;    INV; 5674 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5674
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1027-1027 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           295..5616
FT                 /product="BEL-21_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPIDDYKDLVRKRGVVKGKFTGFVKYVESLQNLELTE
FT                 SHKIALEDRCKNAVSLLEQFSGIQDDIEFHLQDSELESEKQLIERETFENL
FT                 FYDFTSKAKCMLKSQEIIDNDVKVCNKTSSIKLPTITLPSFDGSFEQWLEF
FT                 RDTYISLIHNSKTIDNIQKFHYLRSALTGSASQIIKSLQFTAENYAIAWSL
FT                 LENRFNNNRLLVQNHVKALFSLQSLHKESASHIRKLIDNVLKNIRALKGLD
FT                 EPTDQWDTLIIFLIVTKMDSATEKEWENHKSALSKLPSHANKKLTLNDMIT
FT                 FLTDRADMLESIKSTHESSKQTSEGFVKKTLSHQSKHVSSHSYTATRNNNN
FT                 NSYNKLSQKYNSYSDSKRQHRCNMCKENHPLYSCSKFSDLPMKDKLLFVDE
FT                 NKLCKNCLRGGHAVSHCWFGPCKLCNRKHNSLLHGECCDNSNTSKSVGPQD
FT                 AQALASATCGESEATTTSSVHSTALHSASTSTRYQVENGYLFQEPVILSTA
FT                 LLDILDSDNNYHTIRAILDNGSQHSFIKKSLCDKLKIRLIQSTVQIAGVGN
FT                 SVTQSTQSCKVQVRSKNQEFNTHLNCLVLPCITATLPSVAHNVAKLMIPSN
FT                 VSLADPTFYMSKNIDLLIGADRFWDLLSEGLIRLTNGPYLQNTKLGWVVSG
FT                 VVHTKGSSVNRVQCNFTHTYDNADIQLTKFWELEEISSQTSNMSKEDSICE
FT                 NLFIKTTTRDNDGRFSVRIPLSESADQLGDSYSQAESRFLALERKLGRCTP
FT                 SYKKLYFDFMREYLELGHMTKIDTYPSPHYFLPHHGVFRENSTTTKLRVVF
FT                 DASAKTTSGQSLNDIQMIGPSLQNDIFSILLRFRQYTYIACADVEKMYRQI
FT                 LIQPDQQYLQLILWRENPLDALGVYRLNTVTYGTASAPYLSMRCLQQLASE
FT                 CTDNDIATIIYKDFYVDDLITGCDDKRELLDICNKVSNVLKSGCFYLRKWL
FT                 FNFDLSTLNLNASKNLSLGESCQSKTLGLGWFANTDELYYTTKFKFTENHV
FT                 TKRIMLSAISQVYDPLGLLAPIVILAKILLQKLWTYKIGWDDPVPHDILIS
FT                 WKKFVDTLDYLDKLRIPRQVINSKMQYIELHIFTDASQNAYGACAYVRMYS
FT                 GNNNKVSVALLCAKSKVAPVKPITIPRLELCGALLGAKLYTKIINSLRSNF
FT                 TNVYFWSDSTIVLGWLRMSPNTLKTFVQNRVAQINELTGSLPWLHVGSKSN
FT                 PADLVSRGVTLDALRTADIWWRGPAFLHERLCNFSYDYSCHNVNFNELPDT
FT                 KLTTTLLVHQVNKNTFPFERFSSFIRMKRVFAYMLRFIDNVRHKIKLNRKY
FT                 GPLQVDELNKSIIKLTRMSQIQSFPDLDISSKGILKGNRNISGLNIFVDNN
FT                 NIIRVGGRLDNSLSFSYNKKHPILLCSKHTFTRLLFQYEHIRQLHVGPQQL
FT                 LAGIREEWWPLRGRNLARNVVHTCVTCTRIKGKTMSVQMGNLPIERLEPGY
FT                 PFIRCGVDYAGPMFILNRKGRGAKLEKCYICLFICFSTRAVHLELVTALTT
FT                 DAYILALKRFMSRRGKPSEIFSDNGKNFVGAMKELTHFLRNNCDNIIEVLA
FT                 NDDIKFNFIPPYTPHFGGLWEAGVKSCKYHIRRVIGNANLTYEEFSTILAQ
FT                 IEAVLNSRPMYPLSADPADLLPLSPSLFLIGRPLTAPACPDLTTTASHRLS
FT                 RYDRVEQMRQQFWQRWSKEYIAELQTRTKWKTRREELVPNTLVLIKEDNLP
FT                 PLKWRLGRILHTFPGKDGLSRVADIKTATGTVRRAFSKICPLLSQEEEKTT
FT                 SSQ"
XX
SQ   Sequence 5674 BP; 1790 A; 1083 C; 1107 G; 1694 T; 0 other;
     taaattggac cttcgaaccg gatcggagcg gcttcaagaa gaacacgtgg aagaagccgg        60
     caacctgcat acgaagaaaa cggtcaggcc attcaacgtt cctttccaaa cccttccctt       120
     agcatcattt gagctaatat cgtgtttaaa tttctagtaa ccgaggcgcg gcgcgtcgtc       180
     gcgagaccgc gtcttgaagt acctacttgc cgccattttg tgcagcgtga ttttcaagct       240
     cgaccgggtt aaaaactgta agtacttttc ttttgtttct tgcagtctcc caaaatgcca       300
     atagacgatt ataaagattt ggttaggaaa cggggtgtag ttaaaggaaa gtttactgga       360
     ttcgttaaat atgtagaatc tttacaaaac ttagaattaa ctgaatctca taagattgct       420
     ctagaagatc gatgtaagaa tgctgtttca ctgttagaac aattctcagg cattcaagat       480
     gacatagaat ttcacctaca ggattctgaa ttagaaagtg aaaaacaatt aattgagcga       540
     gaaacttttg aaaatttatt ttacgatttc acatctaaag cgaaatgcat gctaaagagt       600
     caagaaatta ttgataacga tgttaaagta tgtaataaga cgtctagtat taaattaccc       660
     actattacat tgccttcctt cgacggttca tttgaacagt ggttagagtt tagagatacc       720
     tacatttcct tgattcataa ttctaaaact atagataata ttcaaaaatt tcattactta       780
     cgttccgcgc tcactggttc tgctagtcaa ataataaaat cgttgcagtt taccgctgaa       840
     aattacgcga tagcatggag tttattggag aacagattta ataataatag attactcgtt       900
     caaaaccatg ttaaagctct gttctcatta cagtcattac acaaagaatc tgcatctcat       960
     attcgtaaat tgatagataa cgtactaaag aatattcgcg ctcttaaagg tctagatgag      1020
     cccacggatc aatgggatac gttaatcata ttccttatag ttactaagat ggactcagcc      1080
     accgagaagg agtgggagaa ccataaaagt gcactctcta agttaccaag tcacgctaac      1140
     aaaaaattaa cattaaacga tatgattaca tttcttaccg atagggcgga catgttagaa      1200
     tccataaaaa gtacacatga gtctagtaag caaacgtcag agggattcgt aaagaaaaca      1260
     ttatcccatc aatctaagca tgttagctca catagctaca ccgcaacgcg taataataat      1320
     aataattcgt ataataaatt atcgcaaaaa tataattctt acagtgattc caaacgtcag      1380
     cataggtgta atatgtgcaa agaaaatcat ccactttatt cgtgcagtaa gttcagtgac      1440
     cttcctatga aggacaagtt attattcgta gacgaaaaca agttgtgtaa aaattgtttg      1500
     cgtggtggac atgcagtgtc tcattgctgg ttcggccctt gcaagctatg caatcgtaaa      1560
     cataattcgc ttcttcatgg tgagtgctgt gataacagca atacgtcaaa gtctgtaggt      1620
     ccgcaggacg cgcaagcgct agcgtccgca acgtgtggcg agtccgaagc gacgacaacg      1680
     tccagtgtac acagtaccgc gctacacagt gcgtcaactt caacgcgtta tcaagttgaa      1740
     aatgggtatt tattccaaga gcccgtaatt ctttcgactg cattattaga tattttagac      1800
     agtgataaca attatcacac tattcgtgca attttagata atggcagtca acattcgttc      1860
     attaaaaaat cgttatgcga taaattaaaa attcgtttga tacagtccac agtacaaatc      1920
     gcaggggtag gtaattcggt aacccaatct acacaatctt gcaaagtgca ggtgcgatct      1980
     aaaaatcaag aatttaatac gcatttaaat tgtctcgtcc ttccttgtat tactgcaacg      2040
     ttgccttctg ttgctcataa tgtcgcaaaa ttgatgattc cgagtaatgt atcactcgcc      2100
     gatcctacat tttatatgtc caagaatatc gatttattaa tcggcgctga tagattttgg      2160
     gatcttttaa gtgaaggatt aattcgcctt acaaacggcc catacctaca aaatactaag      2220
     ttaggttggg ttgtatctgg tgtcgtacac acaaaaggtt catccgttaa tcgagttcaa      2280
     tgcaatttta cgcacacgta cgacaacgca gatattcaat taacgaagtt ttgggaatta      2340
     gaggagataa gttcacaaac ttcgaacatg tctaaagaag atagtatttg tgaaaattta      2400
     tttataaaaa caactacacg tgataatgac ggtcgtttct ctgtgcggat cccattaagc      2460
     gaatcagctg atcaactagg cgactcgtac tcgcaagccg agagtcggtt cctcgcgctt      2520
     gaacgtaagt taggtcgctg cacaccgagt tataagaaat tatactttga ttttatgcgt      2580
     gaatatttag aactcggtca tatgacaaaa atagatactt atccgtctcc acattatttc      2640
     ttaccgcatc acggtgtatt tagagaaaat agtacgacta caaaattacg agttgtgttt      2700
     gacgctagtg ctaaaactac ttccggtcaa tcgctaaatg atatccaaat gattggtccg      2760
     tctttacaaa atgatatttt ttccattctt ttaagatttc gtcagtacac atatattgcc      2820
     tgtgcagatg tcgaaaaaat gtacagacaa atactaattc aacccgatca acaatattta      2880
     caattaattt tatggagaga aaacccgctc gatgcactcg gtgtataccg ccttaacaca      2940
     gttacctacg gcacggcgtc cgcgccatac ctaagcatgc gctgtttgca acaacttgcg      3000
     tcggaatgta ctgataacga catcgctact attatttaca aagattttta cgtagacgat      3060
     ttaattacgg gttgtgatga taaaagggaa ttattagaca tttgtaacaa agtttctaac      3120
     gtgctaaaat cgggttgttt ctatttacga aaatggttat tcaatttcga cttgtcaact      3180
     ttgaatttaa acgcatcaaa gaatttatct ctaggcgagt cttgtcaaag taaaacttta      3240
     ggtttaggtt ggtttgccaa caccgatgaa ttatattata cgactaaatt taaatttacc      3300
     gagaatcacg ttactaagcg cattatgtta tcggcaatct cacaagttta cgatccatta      3360
     ggtttattag cacctattgt aatacttgca aaaatattat tacagaaatt atggacttat      3420
     aaaatcggat gggacgatcc ggtacctcac gatattttaa ttagttggaa aaaattcgtt      3480
     gatactcttg attatttgga taaattacgt ataccacgtc aggttataaa tagtaaaatg      3540
     caatatatag aattgcacat atttacggac gcctctcaga atgcgtacgg cgcctgtgcc      3600
     tacgtccgta tgtactcggg taacaataac aaggtgtccg tagccttatt atgcgctaag      3660
     tcgaaggtcg cgcccgtcaa acctataact ataccgcgtt tagaattgtg cggagcatta      3720
     ttaggcgcaa agttgtacac taaaattatt aattcacttc gttcgaattt cactaatgtt      3780
     tatttttggt cggattccac aattgtgcta gggtggctaa gaatgtcacc taatactctt      3840
     aaaacattcg tacaaaatag ggtagctcaa attaatgagc tcacgggtag tttaccatgg      3900
     ttacacgtag gaagtaaatc caacccagct gacttggtgt cacgcggggt cacgctggac      3960
     gcactgcgca cagctgatat ttggtggcgc ggcccggcat ttttacacga acgattgtgt      4020
     aattttagtt atgattatag ttgtcataat gttaatttta atgagttgcc cgatactaaa      4080
     ttaacgacca cactgttagt acatcaagtt aataagaata catttccatt tgagagattt      4140
     tcttccttta ttcgtatgaa acgtgtattt gcttacatgt tacgtttcat tgataacgtt      4200
     cgtcataaaa taaagttaaa tcgtaaatat ggcccgcttc aagtagatga gttaaacaaa      4260
     tctattatta aattaactcg aatgtcacaa attcagtcgt ttcctgatct tgatatatct      4320
     tcaaagggga tcttaaaggg taatcgtaat atatctggtc ttaatatatt tgttgacaat      4380
     aataacatta ttagagtagg aggtaggcta gataattctt taagtttttc atacaataaa      4440
     aagcacccca ttttgttatg tagtaaacat acttttacac gtttattatt tcaatatgag      4500
     catatacgcc aactacatgt aggtcctcaa caactgttag ctggtatacg agaagaatgg      4560
     tggcccctca gaggtcgtaa tctggccaga aatgttgtac atacatgtgt gacatgtaca      4620
     cgtattaaag gtaaaactat gtcagtacaa atgggtaact tacctataga aaggctagaa      4680
     ccaggttatc catttataag gtgcggtgta gattatgcag gacccatgtt tattttgaac      4740
     cgtaaaggaa ggggcgctaa attagaaaaa tgttatattt gtttatttat atgtttctct      4800
     acgcgtgcag ttcacttgga gttggtgact gctttgacaa ctgatgcata tatattagca      4860
     ttaaaacgct ttatgtctag acggggtaaa ccctctgaaa tattctcaga caacggtaaa      4920
     aattttgttg gagctatgaa agaacttaca cattttttaa ggaataattg tgataatata      4980
     attgaagttt tagctaatga tgatataaaa tttaatttca taccaccata tacaccgcat      5040
     tttgggggat tgtgggaggc aggagttaag tcttgcaagt accacatacg tcgtgttata      5100
     ggcaacgcga acttaactta tgaagagttt agcacgatat tggctcaaat cgaagccgtc      5160
     ctaaactctc gacccatgta tccactgtcc gcagacccag ctgaccttct tcccctcagc      5220
     ccttctctgt ttctgattgg ccgaccgctc accgcaccgg cctgcccaga cctgacgact      5280
     acagcttcac atcgcctgtc ccgctacgac cgcgtggaac agatgcggca gcagttttgg      5340
     cagaggtggt caaaggagta catcgcggag cttcagacaa gaacgaagtg gaagacacgc      5400
     agagaagaat tggtacctaa tactcttgta ctaatcaagg aggacaatct gccgcctctc      5460
     aagtggcgct tgggaagaat ccttcatact tttccaggga aggatggcct gtcacgagtc      5520
     gctgacatca aaacggcgac agggacggta cgaagggcat tctctaaaat atgtccttta      5580
     ttatcgcaag aagaagaaaa aactacgagt tcacaataat catgcagtta tcagtacttc      5640
     gttggaagca ggagcttcca aggccggggg cata                                  5674
//
ID   BEL-21_TrNi-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-21_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-364
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1056-1056 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 364 BP; 109 A; 86 C; 76 G; 93 T; 0 other;
     tgttaacgct actgctaacg ccatctagtg gaaaaggatt aagatacgag acaccctcta        60
     tcgtccggcg gacggagacg cggcgaatga ttgtgagcgg cgaacgagac cggcgtgcag       120
     cgagcagcga gctctgattg gtcgccgagg aacttcaatt attcgctcct atcgatcact       180
     tctttttgac atccttcaat cagcaactgc ggtggtagtc ggtacaccac cgtaacatat       240
     tattcgcctt acataatatt tttctgaatg tactgtactc atcataataa agtattttta       300
     taagaagcct aataaagaaa aattcattga agagtgacct gatcctcaca cacaacacac       360
     aaca                                                                    364
//
ID   BEL-220_AA-I repbase;    DNA;    INV; 6715 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-220_AA_;
KW   BEL-220_AA-LTR; BEL-220_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6715
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 897-897 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5664-6242] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3350..4363,4367..5518)
FT                 /product="BEL-220_AA-I_2p"
FT                 /translation="MTRFWSCEEVESGKAYSPEEARCEKWFSSTVQRDSGG
FT                 RYTVALPRMEDAVSRLGESKDIAFRRFQGTERRLARDPSLRQQYVAFMAEY
FT                 LELGHMRIVSETDDTSTKRCYLPHHPVVKESSTTTKVRVVFDASCKTATGV
FT                 SLNDVLLVGPVVQEDLRSIILRSRTKQIMLVSDVEKMFRQINVRPEDRQLQ
FT                 CILWRNSQSEDVRTYELNTVTYGTKPAPFLATRTLHQLALDDEDRFPLAAR
FT                 AAIEDTYMDDVITGADDVETATELQLQLNAMLSGGGFLLRKWASNCPSALD
FT                 GISQENLAIRSMDGINLDPDPSVKTLGLTWFPTTDILGFQFSIPPVTGVIL
FT                 TKRSVLSVIATLFDPLGLLGAVITTAKVFMQQLWTIRDENGQPLDWDKPLP
FT                 PTVGEAWWKFHEQLPLLNHPRIERCVIIQKAVGVEIHCFSDASEKAYGACL
FT                 YIRSTDEDGRVKVRLLSSKSKVAPLKCQTIPRLELCGAVLAAQLFEKVRES
FT                 IRMTTTCYFWTDSTCVLRWIQAAPTTWTTFVANRIAKIQIITEGCRWSHVP
FT                 GKQNPADLISRGVTPEEILENHFWWQGPTWLHESSDRWPRSTEISSVEEVE
FT                 EEKRRVVAGTVSTITEFNQEYFRKFSSYSDLVRRTAYWLRLMKLLQLPATQ
FT                 RSNQGFLSTSELREAEKTLVRLVQKETFVEELKALSKGETVPRGSHLRWYN
FT                 PFISEDHLLKLGGRLKPTRVPS"
XX
SQ   Sequence 6715 BP; 1706 A; 1642 C; 1667 G; 1692 T; 8 other;
     ttttggtcct tcgagccgga tcaggaccac tccggaccct ggaagtattc gtattctcgg        60
     cattgggccg aaactggaac tttcgagtag atcgccatca cccattggat tgcgaacgcc       120
     atcacttcga ggaacaattg aggcgttgtt ccattcagga catcagcgcg cccaaacttg       180
     gcttcacttg tgtcgatcgc catcgctaat gatcccgctt ggcttggctt ggacttcagc       240
     cgggaggatt attgtgcagg ttagtgaact ctagtactat atgtccagcc aagctaggga       300
     attacttcaa actaacacac gattttctct gtggtaattt ggattgccca ctcaacaacg       360
     gtgcgtttga cgaggatacg acgtttggaa ggtttgccta tcatggttcc tgatttgccg       420
     cccattcaaa accgtcgata ttggacacga aaaccacgga cgtggtagga atccctacgc       480
     tatagttgga tattttcgcc gacttctgtt ctatccggac cactgttcag agatcatccg       540
     aggtcattga ccggctacct agctgatgga ggtcatcgac tggtattgtg actgatagaa       600
     tccaacgtcg acttcgacgg gcggccaccc acgcagacga ggagtatcgc ttcgacagcc       660
     agaacgtttt cggcgcagag agggagcatc acaacgaatt tagtccaggt aatttaacat       720
     atttagtgta ctgccgaagc tagacactca ggaaatacac cattttgact tggattcaat       780
     cctcttcgtg ttacctctct gaacgctgag ccctgcttgc ccttttgggc tcctccgtct       840
     ttgaatttgg attcgttgat tgaagttgga gctggacgtc ttctttgatt ggtacctatc       900
     gctaggattg attgataatt tagagcatca tttgtttcct gtggtgagtt gctgcagtat       960
     atgcctggcc gaagccattc cctttggata ctacataact gttctcctct tcgatcatcc      1020
     cttgcttgag tgctggtttt tgagacgatt tggattcaag gctgcttgcg aattgatgaa      1080
     gctaaacttg agtaccgctt gctgttttgt cgggtaaatt aatgcagtat atgcctagcg      1140
     aagctaggtc tacactttgg ctactacact gcatcttttc ctcttcggtc cactaattat      1200
     tgctgagttg tcgtcgatcg aaawtcggac gcgtgacgtc acgctactgc ggtcgatttc      1260
     cttgaggttt tggagcgcmw ctactcgttt ctccgggtaa attaagatag tatatgcctg      1320
     gcgaagctag gccattgcag tatactacac cgcatctctc tctttctgct gcattgcacc      1380
     gacgacgaca acatggtatt acctggcgga gcatcagcaa cgaaggcgcc gacgatgagg      1440
     gcattgacgg cgaggctgaa ggaaatccag ctgtccttca acgacatcta tcgcttcact      1500
     cagaagttct ccgaagccaa cagtatcacc gaggtggaaa tacggatggg caaactggat      1560
     gagctgtggg agagttacag tgcaaccatg gtggaaatct tcgcgcacga ggactacaac      1620
     ccagaaaaaa tgtcgctgga gaaggaacgt gtggmgttca gcgaccaata ctatggggtc      1680
     aaaaccttcc ttctggacaa ggtcaaggag cttcagaaac cttcagtttt ggagcaatcc      1740
     agccgagctg gtgatgggcc agcatcgaat accagcgacc acgtccgtct tccgcagatc      1800
     caactgcaga cgttcaatgg ggacatcgac gattggctga gttttcgcga tttattcacc      1860
     tcactcattc actggaaggt ggatctcccg gaggtggaga aatttcatta tttgaagggc      1920
     tgccttcaag gtgaacccaa ggccctaatc gatccactcc caattacgaa agccaactat      1980
     caggtggcat gggactcgct gttaaagcgc tataataata gcaagcagct gaggaagcgg      2040
     caggtgcaag ctatcttcaa gctaccaact ctatccaagg aatctggagc cgatctgcac      2100
     attctactag aaggcttcga acgcatcgtg cagaccctcg atcaggtcgt tcaacaaaac      2160
     gaatacaagg acttgttgtt cgtcaacatc ctcacagcac gtttggatcc ggtcacgcgt      2220
     agggggtggg aggaagtttc ttctacgaag gagcaggaca ctttggagga tttgttcgag      2280
     tttttacgtc gaagaatcca ggttttggac tgtcttccac caaaaccaac cgacactagg      2340
     ggtgccggcc agttccagca gcagccaaag ccaaggacac aacccatgaa ggctagctac      2400
     agttccaccc aatcaatcca ggcgtctagg ggacgctgtg tggcatgctc ttcggatcat      2460
     ctcctctacc agtgcagtga attccagagg atgacagtat cggataggga cagtctcttg      2520
     aagtcccatg gactttgccg caactgtttc cgggtggggc accaggccaa ggattgtcat      2580
     tcaaaatact tctgccgaaa ctgcaaggcg cgtcaccaca ctctggtctg tttcaagcaa      2640
     gaaagggaaa aggaaaccaa ggttgcgacc gttgctgggg gcaacaagtc gtgcaattcc      2700
     aaggatcacc aggaatcatc caatatccaa gtggcaaatg tggcagccac ggaaactgca      2760
     gtgtccgctg cagctcacca acatccaacg caggttctct tggcgacagc agttgtgatg      2820
     atcgaggacg acgtaggcaa tcgtcatcct gctcgtgcta tgctggattc cggatccgag      2880
     agtaatttta ttacggaacg actgagtcaa cggctacaag tccatcgaga tcgggtagac      2940
     atttcggtgg caggaattgg ccaggtggcc accaaggttc gacaaaggct tagagcggtt      3000
     cttcggtcac gagtttcgga cttttctcgt gagttaggct tcctagtcct tccaaaggtc      3060
     acagtgaacc tcccaacaac cactatcaaa acggatactt ggacactccc aagtgggatt      3120
     caactggcgg atcccacatt cttcgaatcg agcgcggtgg atctcgtact cggtatcgag      3180
     tgtttttttc gaatttttcg aaacaggaaa cagaatttcc ctgggggaac aacttccagc      3240
     tttaactgaa tcagtgttcg gttggatcat cagtggtgga aatgcatttc ctgcacgttc      3300
     tctccacata agctgtaatg cgtccaccct tgacagtttg gataccttga tgactcgctt      3360
     ttggtcctgc gaggaggtgg aatcaggcaa ggcttattct ccagaagagg cacgctgcga      3420
     aaaatggttc tccagtacgg ttcaacgaga ttccggtggt cgttatacgg ttgcattacc      3480
     aaggatggaa gacgctgtgt caaggttggg cgaatcgaag gacatagcgt ttcggcgctt      3540
     ccaaggtact gaaaggagac tggctcggga tccatcactc cgacaacagt acgtcgcctt      3600
     tatggcggag tatcttgagc tcggccatat gagaattgta agtgagacwg acgatacctc      3660
     aacaaaacgg tgctatttac cacatcatcc cgtggtgaag gaatcctcaa cgacaactaa      3720
     ggttcgmgtt gtcttcgacg cctcctgtaa aacggcaaca ggagtttcgc tcaacgatgt      3780
     actattggta gggccggtag tacaggaaga tcttcgatcc ataatccttc gcagtcggac      3840
     caagcaaatc atgttggtat cggatgtcga aaaaatgttt cgtcaaatca atgttcgccc      3900
     ggaagatcgc caacttcagt gtattctatg gcgaaactca caatcggaag acgtccgcac      3960
     gtatgaactg aacacagtga cgtacgggac gaagccagcc ccctttttgg ccactagaac      4020
     actccatcaa cttgctttgg acgatgaaga tcgatttccg cttgcagcac gggcggccat      4080
     tgaagatacc tatatggacg acgtcataac gggagcagat gacgttgaaa ccgctacgga      4140
     gctacagttg caactgaatg ctatgctatc gggaggaggt tttctacttc ggaaatgggc      4200
     atcaaactgt ccgtccgcgc ttgatgggat ttcccaagag aacttagcta tccgttccat      4260
     ggatggtatt aatttggacc cagatccttc cgttaaaacc ttagggttga cctggttccc      4320
     taccacggac attcttggat ttcaattttc catccctcct gtggwcacag gagtaatcct      4380
     caccaaacga tccgtattat cagtgattgc aaccctattc gaccctttag gcctcctggg      4440
     agccgtgatt actacggcga aggtttttat gcaacagcta tggaccatac gtgacgaaaa      4500
     tgggcaacca cttgactggg acaagccgct tccgccaacg gtgggtgagg cttggtggaa      4560
     attccacgaa caactaccgc ttcttaacca tccgcgaatt gaacgatgcg taatcatcca      4620
     aaaggcagta ggcgtcgaaa tccactgttt ttctgacgcc tcggagaaag cttacggagc      4680
     ctgtctgtac atccgaagca cagatgaaga cggaagggtg aaggttcgac ttctttcatc      4740
     caaatcgaag gttgctccat taaaatgcca gaccattcca aggttggaac tgtgcggagc      4800
     agttttggcc gcacaattat tcgaaaaggt tcgcgaatcg attcggatga ccacaacttg      4860
     ctatttttgg acggattcca cgtgtgtcct tcgttggatt caggctgcac ccactacatg      4920
     gacgacgttt gtcgccaatc gtatagctaa gattcagatt atcaccgaag gttgtcgatg      4980
     gagtcacgta cctggaaagc aaaacccggc agacctgatt tcccgaggcg ttactcccga      5040
     agagattctt gaaaatcatt tctggtggca agggccaacc tggttgcatg agagttcgga      5100
     tcggtggccc agatcaacgg aaatctcatc tgtagaggag gtcgaagaag aaaaacggcg      5160
     agttgttgct ggaacggttt ctacaatcac cgagttcaat caggagtatt tccggaagtt      5220
     ttcgtcatat tcagatctcg ttcgtcgcac tgcttactgg ttgcgcctaa tgaaactact      5280
     tcaactaccg gctacacaaa gaagcaatca aggatttctc tccacatctg aactacgaga      5340
     agcggaaaaa accttggttc gtttggtaca aaaggaaaca tttgtcgagg agttgaaggc      5400
     gctctccaag ggtgagacag ttccaagggg ttcacatctt cgctggtaca accccttcat      5460
     ctcggaggat catttactca aactaggagg acggttgaaa ccgacgcggg tccccagctg      5520
     atgttgagtg tagtcaggct ccgattttgc cgttaggagg aagaagcgtt gcccgaaaca      5580
     ttgtcaataa gtgccaaaaa tgctttcgct caaaaccgtc tccaattcaa caattcatgg      5640
     gagaattgcc ggcttcccga gtcaccatag cacgtccatt tttgaacact ggtgtggatt      5700
     actttggccc tatttaccta cgccccgttc cacgccgtgg tgtagttaag gcatacgtgg      5760
     caatcttcat ttgtctgtgt acgaaagcag ttcatctaga gctagtatcg gatttgtcca      5820
     cagaccgttt tcttcaggca cttcgacggt ttgtggcacg gagaggacgt tgtgcgaaaa      5880
     tgtattccga caatggcaca aatttcgtcg gcgcgcggaa caaactacag gacctgttga      5940
     agttgctgaa aagccgagac catcatgatt cggtttcaaa ggagtgtgcc agggatggta      6000
     tccagtggca tttcatccca ccaagcgcgc ctcacttcgg aggtttatgg gaagcagccg      6060
     ttagatcttc caaacatcac ctgttacgag tattgggaga aacaccggta tcacccgaag      6120
     atttcaatac gctgcttacc caggttgaag cttgcctgaa ctctcgcccc cttacgccac      6180
     tgtccgacga ccctaatgat ctcgaaccac tgacgcctgc ccatttcctg atcggttcat      6240
     ctcttcagtc gatccctgaa ccagatttag gcgaacttcc aatcaatcgt ttagatgctc      6300
     tgcaactcat tcaaaggagg ctgcwggatt tttggaagag atggcgcaga gaatatctct      6360
     gccaattgcc aaggaccaag cgatggcagc ctgcaattca agtcgaagtt ggcaagctgg      6420
     tagttataaa ggatgaaaat caaccaccca tgaaatggag aatgggacgt atcacggagg      6480
     ttcaccctgg aagcgataag attgtgaggg ttgtgaccct taaaactgct accggtttct      6540
     taacccgacc ggtagaaaag ctttgtatcc tgccgcttcc agaagacgat agtgcacaac      6600
     aaattacaac agccgatcca tctcagtagc cctttcccat tccatcatcc cattccgtcg      6660
     aagaggattt cctttctatt tgcagaaatt cgacgaattt cagggtgggt gaggg           6715
//
ID   BEL-220_AA-LTR repbase;    DNA;    INV; 710 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-220_AA_;
KW   BEL-220_AA-I; BEL-220_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-710
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 898-898 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 710 BP; 220 A; 174 C; 142 G; 174 T; 0 other;
     tgttcaagag tacgatacac ttttccaaac cctgttatca agaggacgcc gacacataca        60
     gcagtgcaag ccatcaacgg tgatacgtaa tccactacca acaaaccgaa gcccagctat       120
     cacggttggc tactccacgc tcatctagcc aaatctccct atctctacat caacaatcat       180
     cagtcatcat cagaactatc gattccacat gagtgataag gatgaccgat accacaacag       240
     catgtgataa gagcggtgag aatatcactc gctcccagaa ccgacgataa catcgcagcc       300
     tcgaaggaat gacctacgaa cagtgatctt tcggaagcat cgggcagttc acttctacca       360
     gaccgccgga gagcatggaa ccgattaacg tccgatttta acgtgttttt atgtaactag       420
     tttttaagaa taaatatacg gtttaagcat gtttaagtgt taaatttaga taataaagtg       480
     ttgtgtttaa tgtaaaccgc cgcgagttta agcatgcaag gaaactagaa tccgaggagt       540
     gatccctagc cggaatatcc taccaccatt gtttggattt agtggcaaat atccaaccaa       600
     gccaccatca ttgctgcagg atatcatctc tattcgatgt cggggaatta aaggctcaac       660
     cacttctcag ctgagtgaac gtcgaaggta actggctcaa tccccggtca                  710
//
ID   BEL-221_AA-I repbase;    DNA;    INV; 6467 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-221_AA_;
KW   BEL-221_AA-LTR; BEL-221_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6467
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 899-899 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5521-6078] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(79..3420,3424..6177)
FT                 /product="BEL-221_AA-I_1p"
FT                 /translation="MMPTTTRSQRICEKCKNPNDVTKMVACDRCHRWYHRT
FT                 CAGVAERYIGKWSCERCVFTVTISDHSVSGKSGSTSRSSRLQLQLLRLEEE
FT                 KRAQEKLIQEQQEQDRIRLEAKAALEKKYLDEKYALLIAEAEDEEADSRRS
FT                 RRSRASRNSQVQEWVDGVDEAAGGNPVPEHIEDIFPPISVGTEMVVPRRGI
FT                 VSRYTGAVPKITSNPSPNVEAVGRGNRPGPVINDNVEAEGIGSVAGINNPI
FT                 TASTPIRIGGTVQSSQPVRSMYRQSVYTQPVYTQSLFPPSTQMQSLSILPK
FT                 VVPRPPLPTFLFPEPISKPKTRTRVSFPPVSETSLPHTTGRPPVDLTVESP
FT                 PSNSAQAKAPRSMVSTSSQLPPVLHSSQEPLAHSIEQQSSVQPASTLPSFN
FT                 PSFQQAHTQSHVSRSVVCDQVDDQSQPPSALRSSASYTPSPPQHHVEPEIL
FT                 LPQSAIHQPASSHSSPLQQNEPYATQLQQIQNQQAMWGQFQQQLSARQVVP
FT                 KELPVFSGNPEEWPLFVSSFRNSTAMCGYSQSENLMRLQRCLKGKALEAVR
FT                 SNLLLPTSVPKVMETLEILFGSPERLVQSLLSKVRSVPTPKAERLETLVNF
FT                 GLVVQNLVGHLQAANQLAHLTNPTLLQELVEKLPPHLRLDWALYKKSAGPV
FT                 DLGTFCEYMSAITSAASDVAHFTDFEGPRAGGNEKQRKEKAFVNAHVSSEP
FT                 RKFEQQQVKKVESKERPCYVCHSVKHRIKDCNKFKSLSFGDRLKTVETHQL
FT                 CAVCLVPHGKWSCKSTRICGVGDCDKKHHPSLHPGQPIGVKPTSESSGARP
FT                 KSEAVVNVHCRIRSATVFRIIPVVLYGEKTRLSTFAFLDEGSSSTLIDREV
FT                 ANLLNLGGDLKPLCLTWTGNVSRHEADSRLVSLRISGEESSKSFSLTSVST
FT                 VSKLELPVQTLQYEELSRRYPYLAGLPVRSYENAVPTILIGLDNIRLSLPL
FT                 KVREGRLGPVAAKTKLGWTIFGSIGDSKADSSPRILHICKNEDDNRLHDLV
FT                 KGYFAVENLGVSVTCGPEADEDRRAKEILQQTTVKRADGHYETGLLWRYDV
FT                 VELPSSYGMAERRLICLERKLRNHPELRASLDKQISEYLNKGYAHKATPQE
FT                 LEESDPRTWYLPLGVVTNPRKPGKVRIVWDAAAKVNGVSLNGTLLKGPDLL
FT                 TSLPTVLCRFRQRQIAIAGDIREMYHQLKIRKEDQQVQRFLYRSDPSMKPE
FT                 VFVMNVATFGSTCSPCSANFVKNTNAMECKAEFPEAAAAVVENHYVDDYLD
FT                 SRDTEEAMAKLASEVREVQQSAGFELRNWRSNSKQVLQILGEVAEDTRKDF
FT                 SVDKESQVERVLGMAWLPDDDVFVYAVKLPDQFGEVTKRSILRFVMSVFDP
FT                 LGLISNLLIHGKIIIQDLWRAKVGWDEAIPSDVLEDWKRWIKKLSELSQTR
FT                 IPRCYFPGYNPDSLQTLELHIFVDASESVYACVAYFRIIDNGQPRCALIAS
FT                 KAKVAPIKPLSIPRLELQAAVIGSRLAKSISEYHTIAPSRRFLWSDSTNVL
FT                 SWINSDARRYRQYVAVRIGEILEETQPEEWRWISTKINVADEATKWGKGPD
FT                 CRPNSRWFAAPDFLLKPESEWPRQKAPVVNTEEELRVVHVHHAVMLQPCID
FT                 YNRFSKWERMLRTTAYVYQFMDRYLDLGKERSMQSGGVLKQEDLVRAERAL
FT                 WRLAQAEEYAEELVVLRQANQSEDRLLNLENSSPLKQLSPFLDEFGVIRMA
FT                 GRTEASPLAKYDSKFPIISPKNHRVTELLIDWHHRRFGHHNGETVVNEIRQ
FT                 RFHISTLRTMVRKLSKKCQWCNVYKAQPAVPKMAPLPEARVTPFVRPFSLV
FT                 GVDYFGPYMIKIGRSQVKRWVALFTCMVIRAVHVEVAASLSTESCKLAIRR
FT                 FIARRGAPTQIYTDHGTNFVGASRELANQLATMNRELAETFTNTNTRWFFI
FT                 PPSSPHMGGAWERMVRSVKTAMEVINEFRAPSEEVFHTIICEAESIVNSRP
FT                 LTYVPLETSDQEALTPNHFILLSSNGVKQPEKAPTTEGEALRNGWNLCRYV
FT                 LDQFWS"
XX
SQ   Sequence 6467 BP; 1709 A; 1562 C; 1770 G; 1423 T; 3 other;
     ctctttaaaa atctcaactc atagaaagtg tgttgctgaa acggattaaa agattacgga        60
     ggtgcagagt acgaatccat gatgcccacg acaacgagat ctcagcgcat ttgcgaaaag       120
     tgcaaaaacc cgaacgacgt gacgaaaatg gtagcttgcg atcggtgtca tcgttggtac       180
     catcgtacgt gtgcgggggt ggctgagagg tacatcggta agtggtcatg cgagcggtgc       240
     gtattcacgg tgaccataag tgatcattcg gtatccggta aaagcggcag cacttcacga       300
     tcttcacggt tgcagcttca actattacgg ctggaggagg agaaaagggc tcaagaaaag       360
     ctgattcaag agcagcaaga acaggatcgt attcgactgg aagcaaaagc tgcgctggag       420
     aagaaatatc tcgatgagaa atatgctctt ctaatcgccg aggctgagga cgaagaagcg       480
     gatagtcgta gaagtcgtcg aagccgagct agccgaaata gccaggttca ggagtgggtg       540
     gacggagtgg atgaagcagc gggaggaaat ccagtgcccg aacacattga ggatattttt       600
     ccaccaattt cggttggcac tgagatggtt gtgcctagaa gaggaatagt ttctcgatac       660
     accggagctg tgcccaaaat cacctcgaac ccatcgccaa acgttgaagc ggttggcaga       720
     ggaaatcgtc ctgggcctgt tatcaacgat aacgtagaag cagaaggtat cgggtcggtg       780
     gcaggtatca ataatccgat aacagcatcg actccaataa gaatcggtgg taccgtacaa       840
     agttcgcagc cagtacgatc catgtataga cagtcggtgt acacccagcc ggtttataca       900
     cagtcgttgt ttcccccatc cacgcagatg caatccctgt ccatactgcc aaaggtagtt       960
     ccacgaccgc ccctaccgac gttcttattc ccagaaccga tctcgaagcc aaaaactcga      1020
     acacgtgttt cgttcccacc cgtaagcgaa acatcattac cacacacaac tggtagaccg      1080
     cctgtggatt tgactgtcga atcgcctccg tcgaattcag cacaagcaaa agctcctcgc      1140
     agcatggtgt cgacgtcgtc gcagcttccc ccagttttgc actcgtcgca agaaccccta      1200
     gcccactcaa tcgagcagca atcgagcgtg caaccagcat caacgttgcc atcgttcaat      1260
     ccttcgtttc aacaggctca cacacagtcg cacgtatcga gatcggtggt gtgtgatcaa      1320
     gtcgacgatc aatctcagcc tccatctgcg ttgcgctcct cagcttcgta caccccctca      1380
     cctccacaac atcatgtcga gccggagata ttattgcctc agtcagcaat acatcaacct      1440
     gcatcgtcac attcatcgcc actgcaacag aacgagccat atgctaccca gctgcagcag      1500
     atacaaaatc aacaggcgat gtggggacaa ttccagcagc agttgtccgc cagacaggtt      1560
     gttccaaagg aacttccagt gttttctgga aatccagagg aatggcccct ttttgtgagc      1620
     agcttccgta actccactgc aatgtgtggt tactctcagt cagagaacct gatgaggctg      1680
     cagagatgcc ttaagggcaa agcgttggag gccgttcgga gtaatttgct gctgccaaca      1740
     tcggtcccga aagttatgga gacgctggag attcttttcg ggagccctga gcgattggtc      1800
     cagtcgttgc ttagcaaagt acgtagtgta cccactccga aggctgaacg gcttgaaact      1860
     ctagtgaatt tcggcctcgt tgtccagaat cttgttggtc atttgcaggc cgcaaatcag      1920
     ctagcccacc tcactaaccc cacgcttcta caagagctgg tggaaaagct gccgccgcat      1980
     ctccgattgg attgggcatt atacaagaag agcgccggtc ctgtggactt gggaacgttt      2040
     tgcgagtata tgagtgccat cacgtcggcc gcaagtgatg tggcgcactt caccgacttc      2100
     gaaggacctc gggccggcgg aaacgagaag caacgaaagg agaaggcgtt cgtcaacgct      2160
     catgtgtctt cggagccccg gaaatttgag caacagcagg tgaagaaggt ggaaagcaag      2220
     gaaagaccct gctacgtttg ccacagtgtg aagcatcgga ttaaggactg caacaagttc      2280
     aagtccttgt cattcggaga tcggttaaag accgttgaaa cgcaccagct atgtgcggtc      2340
     tgtttagtac cccatgggaa atggtcctgt aaatctacac gcatctgtgg agtcggagat      2400
     tgcgataaaa aacaccatcc atcacttcac ccgggtcaac cgataggggt gaaaccaacg      2460
     tctgaaagtt caggagcgcg gccgaaatct gaagcggtcg tcaacgtgca ttgtcggatt      2520
     cgaagcgcca cggttttccg catcatcccg gtggtgttgt atggtgagaa gacccgatta      2580
     tccacgttcg cctttcttga tgaaggttcg tcatcgaccc tgatcgatcg agaggtggca      2640
     aacctgctga atcttggagg agacttgaaa ccactgtgtt tgacctggac ggggaatgtc      2700
     tctcggcacg aagctgactc acggcttgtc agtctgagga tttccggcga agaaagcagc      2760
     aaaagtttct cgttgacaag cgtcagcacc gtaagtaaac tggagcttcc tgtacagacg      2820
     ctgcagtatg aagaactgtc tcgtcggtac ccgtatttgg ccggactacc agtaagaagc      2880
     tacgagaatg ccgttccgac aatcctgatt gggctggaca acataagact gtcattaccc      2940
     ctcaaggtgc gcgaaggacg acttggaccg gtggcggcaa aaacgaagct aggatggacg      3000
     atcttcggga gcatcggaga ctcgaaagcg gattcgtcac ctcgaatatt acacatatgc      3060
     aagaacgaag acgataatag gttacatgac ctagtaaaag gctactttgc ggttgaaaac      3120
     cttggagtat ccgtgacatg cgggccagaa gcagatgagg atcgtcgagc gaaggagatc      3180
     ctgcagcaaa cgactgtcaa gcgtgctgac ggtcactatg aaaccggatt gctatggcgg      3240
     tacgatgtcg tggagttgcc atccagttat ggcatggccg agcgccggct gatctgcctc      3300
     gagcggaaac ttcgaaatca tccagaattg agggcgagtt tggacaagca gatttccgaa      3360
     tacttgaaca aaggctacgc ccacaaagcg acgccgcagg agttggaaga aagtgatcct      3420
     cawcgtacat ggtacctgcc tctcggagtg gtaactaacc cacggaagcc cggtaaggtt      3480
     cgcatcgttt gggacgcggc cgccaaagtc aacggagtgt ctctgaacgg cacactttta      3540
     aaggggccgg accttctcac gtcgttacca acagtattgt gccgtttccg tcagcgacag      3600
     atagcgattg caggtgacat ccgagagatg tatcatcagc tgaagatcag aaaggaagac      3660
     caacaggttc agcggtttct ctacagaagc gatccatcga tgaagccgga ggttttcgtc      3720
     atgaatgtgg caacctttgg gtcgacatgt tcgccctgtt cggcaaattt cgtgaaaaac      3780
     actaacgcga tggagtgcaa ggcagaattt ccggaagcgg cggcagcagt ggtggaaaac      3840
     cactacgtgg atgactacct cgatagccgc gatacggagg aagccatggc aaaactggcg      3900
     tcggaggtac gagaggttca acaatccgcg ggattcgaac tacggaactg gcgttcaaat      3960
     tcgaagcagg tgttgcagat tctgggagaa gtggcagagg atacaagaaa ggactttagc      4020
     gtggacaagg aaagccaagt agaacgtgtt ctcggtatgg cgtggctacc ggacgacgat      4080
     gttttcgtat atgcggtcaa actgccggac cagttcggtg aagtaacgaa gcggagcatc      4140
     ctgcggttcg tcatgagcgt cttcgatccg cttggattga tttcgaacct gctcatccac      4200
     ggcaagatca tcatccaaga cctttggaga gctaaagttg gatgggatga ggcaattcca      4260
     tcagacgtgc ttgaagactg gaagcgatgg attaagaagc tctccgagtt gagtcaaacg      4320
     cggataccac gctgctattt tcccggatac aatccagaca gtttgcaaac ccttgaactt      4380
     catattttcg tggacgcgag cgaatctgtc tatgcttgtg tcgcgtactt ccggattatc      4440
     gacaatgggc agcctcgatg tgccttgata gcttcaaagg ccaaagtggc accgataaag      4500
     ccactatcga ttcccagatt agaattacaa gcggcggtga ttggaagtcg actagcgaag      4560
     tctatttccg agtatcacac tatagcaccg agccgcagat tcctctggag tgactccaca      4620
     aatgtgcttt cctggatcaa ctcggatgct cggaggtatc ggcaatacgt agcggtacgc      4680
     atcggagaga tcctggaaga aacgcagcct gaggaatggc gttggatatc caccaaaatc      4740
     aatgtagcgg atgaagccac aaagtgggga aagggccctg attgtcgtcc gaatagccgt      4800
     tggtttgctg cgccagactt cctacttaag ccggaaagtg aatggccacg gcaaaaagct      4860
     cccgtagtaa acaccgaaga ggaactgcga gtagttcacg tgcatcatgc ggtaatgtta      4920
     caaccgtgca tcgattacaa tcggttctcc aaatgggagc gtatgctacg aaccacggca      4980
     tatgtatacc agtttatgga tcgttatctg gatctaggaa aggaaagatc gatgcagtct      5040
     ggaggagtgt tgaagcagga agatttggtt cgagctgaga gggcattgtg gcgacttgca      5100
     caagccgaag aatacgccga agagcttgtt gtattgcggc aagcaaatca gagtgaagat      5160
     cggttgctga acctggagaa cagcagcccg cttaagcagt tgtcgccatt cctggacgag      5220
     tttggggtga tacggatggc aggccgaaca gaggcgtccc cacttgccaa gtacgattcg      5280
     aaattcccaa taatctcgcc gaagaatcat cgtgtcaccg agctcctgat agattggcac      5340
     cacaggcgtt ttggtcatca caacggcgag acagtagtta acgagattcg tcagcggttt      5400
     cacatctcaa cactccggac tatggtgcgc aagttgtcga agaagtgtca atggtgcaac      5460
     gtttacaagg cacaaccggc ggtgcctaag atggcgcctc ttccagaagc gcgagtaact      5520
     ccgttcgtcc gtcctttttc gctggttggc gtcgactact tcggaccgta catgataaaa      5580
     atcggccgca gtcaggtgaa gcgctgggtg gcgctcttta cgtgtatggt gataagagcc      5640
     gtccacgtgg aggtagccgc atcactctct acggagtcct gtaagttggc aatacggaga      5700
     ttcattgcgc gtcgaggcgc accgacacaa atctacaccg atcacggaac aaactttgtt      5760
     ggggctagcc gagagttggc caatcagttg gctacaatga accgagagct tgcggaaaca      5820
     ttcaccaaca ccaacacccg ttggttcttc atcccaccgt cctccccgca tatgggtggt      5880
     gcctgggaga gaatggtaag atcagtgaaa acagctatgg aggtgatcaa cgaattccgt      5940
     gcgccgtctg aagaggtttt tcacacgatt atctgtgaag cggaatcaat tgtcaactcc      6000
     agaccgttga cgtacgtacc gctggagacg tcggaccagg aggctttgac tccgaatcat      6060
     tttattctcc ttagttcgaa tggggtcaaa caaccggaga aagcacctac aacagagggc      6120
     gaggcacttc gtaatggatg gaacttgtgc cgctatgtkc tggatcagtt ctggagtakg      6180
     tggatccgag aatatctacc agtcgtgacc cggcgtacta aatggcacga cgaagtaaag      6240
     cctgttaagg aaggtgatgt tgtgttcatc gtaggcgagg ccattcggaa tcgatggcct      6300
     agaggtaaag tcttgaaggt catccctggg aaagacggtc gtgtccggca ggtagatgtt      6360
     caaacagcta caggaattct tcgccggccc gtggcaaagc tggccgtgat caacgtactt      6420
     ccggaaggta atcctgctgg accggagcag cattacgtgg aggggga                    6467
//
ID   BEL-221_AA-LTR repbase;    DNA;    INV; 694 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-221_AA_;
KW   BEL-221_AA-I; BEL-221_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-694
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 900-900 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 694 BP; 243 A; 115 C; 124 G; 212 T; 0 other;
     tgtcgcggga ggcgttacaa cctttggcgc ggcagtagaa attcccaaca gggacgctgt        60
     ggatttgaca gacggcttgt cacccaatga cttcaacgtt gtgagtggag ataaacaaat       120
     agcttatgag aagatcgttg ataaagtgtg attcatttgg aaagctatcg tagctaaaat       180
     ccagttaaaa tcctttaatt tagacaatta tttacatgcg attactcaca atgaattcca       240
     atggactcga gtaattccca aaagtgagtt atatatgaaa gacagttgta ttaattacaa       300
     atattagtta atttgctaat gttgtggttt caggttaggt tccatacact atatcctgct       360
     taatctattt acatgaatta aaactgaatt tgaccttaaa ctatttcata aaaccatgca       420
     attgtaagta aacatacatc ctaaaacatg acttaagact aaaaccttaa aatcgactta       480
     aataggtaaa ttgactagac tgacatgacg gtaacgaaga cgttgactga aaatactaga       540
     gtcactgaga tgtgagtatt gtttactgtt aaaaaagatt aatcgaacat aaaatgaaat       600
     ttatattata gttttaaagc cctttgccga ataaatatgg aaatcgctac aaaatcagtg       660
     tcccgttttt tcaacgtctt gcgccgttcc aaca                                   694
//
ID   BEL-222_AA-I repbase;    DNA;    INV; 6604 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-222_AA_;
KW   BEL-222_AA-LTR; BEL-222_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6604
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 901-901 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5546-6127] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1191..2252
FT                 /product="BEL-222_AA-I_2p"
FT                 /translation="MAERLIKEKIKKRERMFASLKRHQQFLESYNQEIQSG
FT                 QVQSRLDKLDDKLAEFEQLQEEIADLDDNEQYEEESNMVAERFENQYYAIR
FT                 GALLMKIAPPVITPPPLDATVLRNTTAAGFHSGVRLPQISLPDFNGDYRNW
FT                 LSFKSTYESLIHESTELSDVQKFHYLKSALKGEAAKLIDSLTITSGNYVIA
FT                 WETITKRYSNEYLLKKRHLQALMEYPKIQQESATAIHGLVDEFEQRLKILK
FT                 QLGEKTDTWGALIVHWMCSKLNDQSLQLWEDHAASLHEPTFTDLVNFLEKR
FT                 TRVLEAVSSNVSESSKSSQKASTKYSKQMVHAATRNGGERSSSSVACPCCG
FT                 ENHYMARCAKF"
FT   CDS           4274..5887
FT                 /product="BEL-222_AA-I_1p"
FT                 /translation="MQQLALLQTNWDDPVPIQLENKWTEYYGQLNRLSELR
FT                 IERFAFIPQWVDVQIHCFADASELAYGTCLYVRTIDQAGNIYVEMLSSRSR
FT                 VAPLKRLTLPRLELCAAKEAANLHSKVIKALDLGQIRSTFWSDSTIVLHWL
FT                 EAPPNNWKTFVANRVSAIQALSQGHRWKHVAGKENPADLVSRGMTVHDFLQ
FT                 SQIWRNGPPWLRTPEETWPSEAQEINFTDEELESRKVVSYATNVSLEPNVI
FT                 FSLRSSLETLLRIVAYCLRFCHNCRLPDQRNRTPYLTVEEISSAKLALVKL
FT                 AQNECFYTDLQDLHKHGNVSRKSSLRRLSPFLDKDHVIRVGGRLRHSDQEY
FT                 TAKHPAILPSKHPFTNLLVNYYHRQTIHGGRQLTLSTMRQDFWPIHGKRVV
FT                 DGVLRKCYRCFRVNPTPVQQPTGQLPSTRVRPSRPFSITGVDYCGPFYLKP
FT                 PHRRAAPPKAYISVFVCFATKAMHLEIVSDLSTTGFLAALHRFVGHHGIPL
FT                 EIHSDNAKNFTGAKNELNELFNILNDKSSQERIGNELSLQGI"
XX
SQ   Sequence 6604 BP; 1846 A; 1445 C; 1536 G; 1754 T; 23 other;
     gagaacatta tggtgccgtg accaggatgc gtggttgaga aaggagccat tgtacaggag        60
     atcattgttc ggaatttggc ggtttcgtgg catagagttc gtcattttgc tggcagtcgg       120
     agatagccat tccatcgcca taagtatcac tcgaaatatt tcaagcacca atccaacatc       180
     gagcgaagcc atcacatcat ctatctcatc tgacgtcact ccagagaaga acgactagca       240
     atcagttgta acacagagtg gtgattgtac ccaatcaatc cagcgttatt ggaccaacat       300
     acaaggcctt atccctcagg ccaccaggtg agtggcattc caaagggttt actgtacgtt       360
     tcggtgctac ttggatatct ttgtttcttt ctgtgttcaa cacgatcgat gcgaggagag       420
     caacgtcgat gattggattg gactctcgga ccagagaaat tcatcggtcg taaatagcgt       480
     gattaggaca caagggacgt ttatatgccg acaaggagtg tccgtattcg aactgaggct       540
     cgtttggtgg atttaaggat atacaaggtc tcatattgac agacctcagg tgagtgtctg       600
     tccatcactt ttcattcgtc tttgaggtgt tacgtggttc ttctttttcc cgtcctatgc       660
     attgctgtac tgctacggag tcgattcagg aggactactt ctgacgcaat cacggattgg       720
     cggctgtata cgctcggaga acgctgtgta caattaaacg acgcaaaatt tcggtgttat       780
     ttgatctacg acatcaacgg tgacaamatt acaaggctgg tgagctgctc gttgaaagtc       840
     tgctgaacgg aatttggata aatatacaag gcttacattc ggtaggccac aggtgagtgg       900
     ccttccaatc catacmtatt ttctactggt acgcttatgc gtttattcct tttcggtttc       960
     tgctgagaac gacatttcgc cacacgaagc gttaattaaa ccacacgtcg aggccgattt      1020
     tccggaacca gaagctgcat ttattctwta caaggcctat tttggacagg cctcaggtga      1080
     gtacctgtcc aaaatataat acttcggttk gcggtacttc ctggttccgt gtggtttctt      1140
     tctttcccgg ttacggagtt tcgacgtgtt gatttggtca ggtgttaggc atggcagagc      1200
     ggttgattaa ggaaaagata aaaaagcgag agcgaatgtt tgcatcgctc aaacggcatc      1260
     aacaatttct agagagctat aatcaagaaa ttcaaagtgg gcaggtacaa agcaggctgg      1320
     acaaattgga tgacaaactg gcagagttcg agcaacttca agaggaaata gcagatctgg      1380
     acgataatga gcaatacgag gaggagagca acatggttgc tgaacgattc gaaaatcagt      1440
     attatgcaat ccgtggagcc ctactgatga agattgcacc accggttatt acaccaccgc      1500
     cgttggatgc gaccgtcttg aggaacacaa cagcagcagg tttccattcc ggtgttcgtt      1560
     taccacagat atcgttgcca gacttcaatg gagattatcg gaattggctc tcgttcaaat      1620
     cgacgtacga atcattgatc catgagtcga cggaactgag tgacgttcag aagttccatt      1680
     atctaaaatc agcactcaag ggagaagcag cgaaactgat tgactcatta acgatcacta      1740
     gcggaaacta cgtgattgct tgggaaacta tcacaaagcg atactckaat gaatatcttt      1800
     tgaaaaagcg acatctgcaa gcactcatgg aatatcccaa aatccagcag gaatcggcaa      1860
     ctgcaatcca cggattagta gatgagtttg agcaacgttt gaaaattctt aagcagcttg      1920
     gagaaaagac cgacacctgg ggagcgctga tagtacactg gatgtgttca aagctcaatg      1980
     atcaatcgtt gcaactatgg gaggatcatg ctgcttcgtt acatgaacca actttcacgg      2040
     atttggtgaa cttcttggag aaaaggacac gggtgttgga ggctgtatca tcgaacgtat      2100
     cggaatcgag caaatcatct cagaaagcgt caacaaaata ttcgaaacaa atggttcatg      2160
     ctgctaccag aaacggagga gaacgatcat cttcatcggt ggcgtgtccg tgctgtggag      2220
     aaaaccacta catggctcga tgtgctaaat ttmtgaacat ggacttgaaa gaaaaactgg      2280
     agttggtgaa caataagcgg ctgtgcagca attgctttcg gccaggtcat tgggtacgcg      2340
     attgtaactc aactttcagc tgtcgtacat gtagtaggaa acatcattcg ttgattcacc      2400
     ctggctttcc tcctggcaat ggaacwactt cgaatggcaa gtctggtggc ctacaagcga      2460
     aaaatwccga gmctccatgt gcatcaacaa acgtcgtwac caatggatct gaagtcgakc      2520
     agtgcgaaat agaacaagaa ggagcagtag gagcttacaa tgcaggaacc aaaggagcaa      2580
     actctagcgt ttttctktcg acagtggtgt tgacaattct ggatcaaaat gggaacaagc      2640
     agttggcgag ggcgttgttg gataatggat cagaagcaaa tataatgact gaacggatga      2700
     gtcaaatcct caagttgaag cgacgttctg taaatgtacc tgtttgtgga gttggcgaat      2760
     ctgaaactag agcaagacat gcagttagta cgatcatcag ttcgagagtg acagacttct      2820
     cagttggtgt ggacttctta attctgcaac gggtgacatc tgatctaccc tctacaactg      2880
     tatcaataac acaatggaaa attccggaaa atttacgctt agcggatccg aatttcaaca      2940
     actccaaccg gatcgatctg ctaattggag cggaacactt ttatcgattt ttgtacgagc      3000
     gtgaaatgaa gcgagtctcc ttgggtccag ggcttcccat cttggtagaa acagtttttg      3060
     gttgggttgt cacggggaaa catacggtag caaaaaatca accgatcaac tgctgtttag      3120
     caacgtcaac ggaaaatttg gaagtagcgc ttgaaagatt ttggaaggtg gaaaccactg      3180
     aagaccttta ctctaaggag gaacaggact ctgaaacaca cttcaaggaa actcacactc      3240
     gtttggagga cggaagatat gttgtgtgtc ttccgaaaca cgtcaacttc gacaggatgg      3300
     taggcgattc acgctccagg gccttggaca ggtttttgaa tatggagaaa cggttggaac      3360
     gcaacacaga gatgaaaatc caatatcatg cctttangca ggaatacctg gatctcggcc      3420
     acatgagaaa gctcgatgac gacgaaatac aagcaacatg tcattcgaaa gcacggaaaa      3480
     ccttttntct accgcatcat gcagtcctaa aggagtcgag caccactact aaagtgcgcg      3540
     tcgtgtttga tgggtcagca cgcaccgata gnggctattc attgaatgac gcactattga      3600
     aaggcccaat aattcaggat gagcttctta gtctcttact acgttttcgt aaatacgagg      3660
     tggccctagt tggagacgta gaaaaaatgt atagacaggt tcgactacac actgatgata      3720
     ctccccttca acggattttt tggagatttt ccacggtcga tccagttagc gaatatgaac      3780
     tgcttactgt tacntatggt ttaacaccgt cgtccttcct atccatccgg gctttacatc      3840
     agctggcagc agacgagggg actgactttc ctgttgctag tgcttctttg gttcatgatt      3900
     tttatgtaga cgattacatt ggtggagctc ccaatgtcaa cgaagctatc cagctccggc      3960
     aagacttgac gcgcttatgt cgaaaggagn attcgtgcta cggaaatggt gctccaatcg      4020
     tcccgaggtg ctgttagacg ttccgccaga tcaattgggt accaatcttt cgattacttt      4080
     tcaattaaat ccagatgagg aaatcaaaac attaggcatt acctgggaac ccagctctga      4140
     caagcttcgg tttagtgttg atattgaaga caggagaaca gtttggacca ggagatgcat      4200
     tctatcctgt atcgccaagc tttttgatcc cttgggattg atttccccag ttgtcgtata      4260
     cgctaagatt atcatgcaac aacttgctct gctgcagact aattgggatg atccggtacc      4320
     aattcaattg gagaacaaat ggactgagta ttacggacag ctgaacaggc tctcagagct      4380
     tcgaattgag cgattcgctt tcattcctca atgggttgat gtacagatac attgttttgc      4440
     tgatgcgtcg gaactggcct atggaacatg tttgtatgtt cgcacaattg atcaagctgg      4500
     taatatttac gtcgagatgt tgtcatcaag atcccgtgta gctccattga aaaggttgac      4560
     tcttccacgc ttagagctat gtgcagctaa ggaagccgct aatctgcatt cgaaggttat      4620
     caaggcactt gatctaggcc agattcgctc taccttttgg tcggattcaa ckattgtcct      4680
     gcattggcta gaagctcctc ccaataattg gaaaacattc gttgccaatc gagtctccgc      4740
     tattcaagct ctatctcaag gtcatcgttg gaaacacgtt gctggaaagg aaaatccggc      4800
     agacctagtc tctcgaggta tgaccgtcca cgactttctt cagagtcaga tatggagaaa      4860
     tggtccacct tggttgcgaa ctccagaaga aacatggcca tctgaagcgc aagagataaa      4920
     tttcaccgat gaagaattag aatccagaaa agttgtgtca tacgccacaa atgttagttt      4980
     agaacccaac gttatttttt ctttgcgctc ttctttggag acactgctgc gtatcgtcgc      5040
     ttactgctta cgattttgtc acaattgtcg attgcctgat caacgaaatc gtacaccata      5100
     tctgaccgta gaagagatct cgtccgctaa attagcctta gtkaaactgg ctcagaatga      5160
     atgtttctac accgatcttc aagatttgca caagcatgga aatgtgagtc gtaaatcgtc      5220
     actccgacgc ctttctccat tcctcgataa ggatcacgtt attagagttg gaggtcgatt      5280
     acgtcattcg gatcaagaat acactgctaa acaccctgca attcttccaa gcaagcaccc      5340
     gtttaccaat cttctcgtca attattacca tcgccaaact atccacggtg gacgacagtt      5400
     gacattatcc actatgcggc aagatttttg gccaattcat ggcaaacgag tggtcgacgg      5460
     agttcttcga aagtgttatc gctgttttcg cgtcaaccct acaccagttc aacagccaac      5520
     tggtcaacta ccaagcacac gtgttcgtcc gagcagaccg ttctctataa cgggagtgga      5580
     ttactgtggt ccgttttatc tgaagccccc tcaccgccga gctgcaccgc caaaggccta      5640
     tatctcagtg tttgtctgtt ttgcgacgaa ggctatgcac ttagaaattg taagcgattt      5700
     gtcaaccact ggatttctcg ctgcactcca ccgctttgtt gggcatcatg gaataccgct      5760
     cgagattcat tcagataatg ccaaaaactt tactggtgca aaaaatgagc taaacgagct      5820
     tttcaacatc ctgaatgata agtccagcca agaacgtatt gggaacgaat tgtcccttca      5880
     aggaattwcg tggaagttca tcccccctag agctcccaat tttggaggac tttgggaagc      5940
     tgcggttaag tctgtcaaag cagctcttaa gaaggaaatt ggaattcatc agctaagtta      6000
     tgaaagcttc gccacattgc ttgtccaaat agccgcagcc ttgaactcga ggccsttagt      6060
     cccactctcc gatgatccgt cggatttaaa tgcgctcact ccatcccatt tcttgatcgg      6120
     tgccccaatg aatgccttgc ccgaaagaga tctcctcaac atccccgcaa atcgccttag      6180
     ccaacaccaa caacagcagc aaatgttcca aaaatattgg gaccgttgga gcagagatta      6240
     tctcgccgag ctacaaacca ccagcaagaa ccttcaaccc agccccatac gcattggaag      6300
     tttggtagta ttgcgtgaag acaacatgcc tccgttgtac tggccgttgg ctagaatcgt      6360
     agatgttcat ccgagtgctg aaggagtcgt acgtgtagtc actgttaaaa cagttagcgg      6420
     aatatataag cgacccgttt gccgaatatg tccattacca ccagataagg agaccgtcat      6480
     cgaggaggga tcctcaagta gtatgtaaga ctgawtcgat gttagatgta akattataat      6540
     tttattattt gaaccatttg tatgttggta aattgttgaa actagttcaa gggggccggt      6600
     atgt                                                                   6604
//
ID   BEL-222_AA-LTR repbase;    DNA;    INV; 552 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-222_AA_;
KW   BEL-222_AA-I; BEL-222_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-552
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 902-902 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 552 BP; 210 A; 110 C; 102 G; 128 T; 2 other;
     tgtgttacga ttaagcttaa ataactaaat tatcatctaa acatagaaca tcaattatca        60
     actaaactgt tatacacaat cwttaatcaa atggaacaac cctaaaattg tacaacacat       120
     acacattaag taactatact gataacacga acaaaaccga agatcgatta cctatgtaca       180
     acacttaggc kacaagataa acattaccgg ccagtcagtc agcaatcgca tagcaagcaa       240
     taaagaccgc aaccaccacg cgcgcgagtt tctaaaacga acatataaag tgtactcaca       300
     tccatatcaa taaatcagtt tcttcaataa agtgtgaagt tttagagaag tttggagtgc       360
     tttgaaggat taaggacaag gaattgggaa aggaaggaca aggactttgg aggatcaata       420
     gttgtttgga caactttccg gtttgttgcg gaggaaattg ggctgcaaaa gaaactccca       480
     caacagaggt caaagggtca acgttgggtc gaaccacaga aatcccaggt aattcgctca       540
     acccacgaat ca                                                           552
//
ID   BEL-223_AA-I repbase;    DNA;    INV; 3095 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-223_AA_;
KW   BEL-223_AA-LTR; BEL-223_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3095
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 903-903 (2011).
XX
DR   [2] (Consensus)
XX
CC   'ATTAG' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(294..1295,1299..2840)
FT                 /product="BEL-223_AA-I_1p"
FT                 /translation="MPTERRIRALKVRQKSLVASLNLITAFVEDFDEETQA
FT                 NEVPVRLESLTQLWSDYNLNQNELETLDEAAIDVHLKERTLLESHYYKVKG
FT                 FLLAHNKSPINQTLSSPTHSSLQIPPSASHVRLPDVKLPIFDGNLENWMNF
FT                 HDLYMSLVHSSAELSNIQKFYYLRSSLSESALQLIQSIPISAINYPVAWNL
FT                 LLEHFQNPARLKQTYVDAIFEFPSLRKESASELHSLVEKFEANVKVLQQLG
FT                 ERIEHWDILLIRLLSTRLDPTTRRDWEEFATNKAAVTFKDLTGFLQRRVTV
FT                 LQSLQPKTVIDTQSSIPLKKPAQRSASSYGANQVNLRKCVICDSHPLYLCE
FT                 SFANLPLEEKESEVRRHQLCRNCLRKGHMSKDCSSSSNCRKCRGRHHTQLC
FT                 SIDAALSSESTSSSYHSSPTTETPSTSGLPSLSASATRTESISCASSGCTQ
FT                 KTVLLATALIDIIDDEGNKHTARALLDSGSECCFVSEQFAQRIKARRKRIN
FT                 MPITGIGQATTYARTKFVSRILSRVGEYSTNIEFVVLPKVTVNLPATSIDT
FT                 SYWNMPPGIKLADPTFDCTNPVDVVIGAEVFFEVFRSPGRIPLGNNLPELV
FT                 NSVLGWVVCGKSDINRSTPIVANFAIIARSSIATLTEHLPHPKETRGTKSS
FT                 IKSNFQGQQASPTSRRHHTEADTKSSRNQAQLRVSTPIATSALNEVTTLTQ
FT                 EIVVKPSYRNASSDSADINRSIHANGSNRQLIHATSFFNQNVTLLQLTALN
FT                 RIERDNSCQQHRSFTGARAVTNQQQLHRCLSSNSPPPVNKLKENVFTAKNY
FT                 QLRSASSSSAKGANLSTVSQQHNLNETVMCPLIPLTRPIIGQKRIG"
XX
SQ   Sequence 3095 BP; 860 A; 910 C; 617 G; 702 T; 6 other;
     ttggtccttc gagccggata cggtcgtcga cactccgtcc gttccgaaac ctctacgatt        60
     cgtttgaaac cgccatcgct acagaggaca gcctgtttcg catccgccat catagttcac       120
     tccgaaacat cgcgaaggat cgctgaagtc cgccatcatt acgakctctt magaatttaa       180
     tacaaggcaa ttgcattgcc tctagaaggt aattagggtt cctattaacc tatcccctgt       240
     tgtgtgcttg ctacgctgat cgtttgtcca cagacccacc attctccgtc gccatgccta       300
     ccgaacgtcg catcagagcc ctgaaggtgc gacagaagag cctggttgca tcgctcaacc       360
     tgatcactgc gttcgtcgaa gacttcgacg aagaaacaca agccaacgaa gtgcccgtcc       420
     ggctagaaag tctcacccag ctgtggtcgg actataacct aaaccagaat gagctggaaa       480
     cactcgatga agccgccatt gacgtccacc tgaaggagcg aacgctgcta gaatcccact       540
     actacaaggt gaagggcttc ctactggccc ataataaatc tccaatcaac caaacactct       600
     cgtctcccac tcattcatca ctgcaaatcc ctccgtcggc atcacacgtg cgattacccg       660
     acgtaaaact ccccatcttc gacggaaatc tggagaactg gatgaacttc cacgatctat       720
     acatgtcgct tgtccactcg tcggccgaac tatcaaacat ccagaagttt tattacctca       780
     ggtcttcgtt gtcggaatcc gctctgcagc tcattcaaag catccctatc agcgctatca       840
     actacccggt ggcgtggaac ctcttgctgg aacacttcca gaaccctgcg cgactgaagc       900
     agacatacgt ggacgccatc ttcgaatttc cgtcgctaag gaaggaatcc gcatctgagc       960
     ttcacagtct ggtggaaaaa tttgaagcaa acgtgaaggt actacaacag ctaggggagc      1020
     gaatcgaaca ttgggacatc ctgctcattc gtctattgag tactcgactt gatccgacaa      1080
     cccgacggga ctgggaggaa ttcgccacca acaaggcggc cgttacattc aaggacctga      1140
     ccgggttctt acagcgtaga gtgaccgttc tccaatcgct tcaaccgaag actgtcatcg      1200
     atacccaatc gtccattccg ctaaagaagc cagctcagcg ttccgcctcc agctacggag      1260
     ctaaccaggt caacctccgc aagtgtgtca tctgcwctga ttcccatccg ttgtacttgt      1320
     gtgagagctt tgccaaccta ccactcgaag agaaggaatc tgaggtgcgc cgtcatcaac      1380
     tatgccgcaa ctgcctacga aagggtcata tgtcgaagga ttgttcatca tcgtcgaatt      1440
     gccgcaaatg ccgaggccgg catcatacac agctttgttc mattgatgcc gcattgtcgt      1500
     ccgaatcaac atcatcaagc tatcattcat caccaactac cgaaacacct tcgaccagtg      1560
     gcctgccatc gctttctgcc tctgctacac gtactgaatc aatcagctgt gcttctagtg      1620
     gctgcacaca gaaaaccgtt ctcctagcta ccgctctaat cgatatcatm gacgacgaag      1680
     gcaacaaaca caccgctcga gcgctcctgg actcaggtag cgaatgttgc ttcgtttcgg      1740
     aacagtttgc ccaacgcatc aaagctcgtc gaaaaaggat caacatgccc atcacaggaa      1800
     tcggccaagc tactacctac gccagaacca aattcgtctc ccgcattcta tcccgagttg      1860
     gcgagtactc caccaacatc gaattcgtcg ttcttcccaa ggtgaccgta aatttaccag      1920
     caacaagcat cgatacttcg tactggaaca tgccacctgg tatcaaactc gctgatccaa      1980
     cattcgactg cacaaacccc gtcgatgtcg tcatcggtgc cgaggtattc ttcgaagtgt      2040
     tccgatctcc tggccgaatc ccactcggca acaacttacc tgagttggtc aactctgttc      2100
     tkggctgggt tgtgtgcgga aagtcggaca tcaaccgatc cactcccatc gtcgccaact      2160
     ttgcaatcat cgctcgttct tcaatagcta cattgacaga acaccttcct cacccgaaag      2220
     aaaccagagg aaccaagtcg tcaatcaaat cgaacttcca aggtcagcaa gcatcgccaa      2280
     cttctcgtcg ccaccacaca gaagcagaca ccaaaagcag ccgaaaccaa gcacaactaa      2340
     gagtctcgac accaatcgcc acctctgcac tcaacgaagt aaccaccctc acccaagaaa      2400
     tcgtcgtcaa accatcttat cgaaatgcat cgtctgattc tgccgacatc aatcgctcca      2460
     ttcatgccaa cggttctaac cgtcaactca ttcatgcaac atcattcttc aatcaaaacg      2520
     tcactctact gcagctaacg gctctgaatc gcatcgagag agacaacagt tgtcaacaac      2580
     atcgttcatt cacaggggcc agagcagtca cgaatcaaca acaacttcac cggtgtttat      2640
     cttctaattc accaccgccg gtaaacaagc taaaagagaa tgttttcacc gcaaagaact      2700
     atcaactgcg ctctgcatcg tcatcatctg caaagggtgc aaatctatct accgtatccc      2760
     agcagcacaa tctcaacgaa acagtaatgt gtccactaat tcctttaacg aggcctatca      2820
     tcggacaaaa gcgcatcgga tagtcactct tcagtagcat aattgaaaca tcatcaatcc      2880
     cattagaaaa catctttatt tcttggaaat tcatagtcca tcgagatcca tagagtttcc      2940
     tgaaaataaa aatacaacgc ccttttgatt aagggacgag tcgaccgatt tgacgtgcca      3000
     caactaacct gtcatcggag tgaacgacaa catcgagcga gaaagagagg caacatcatc      3060
     gactgtcaga aatgtgattt ctgaaggggc cagta                                 3095
//
ID   BEL-223_AA-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-223_AA_;
KW   BEL-223_AA-I; BEL-223_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-518
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 904-904 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 518 BP; 158 A; 108 C; 117 G; 133 T; 2 other;
     tgttcgcaca tcaaaatagt gcgaagagag aattgtggcg ccatctgttc ttcagtgcgg        60
     gcaatctgac agcacggaca aactatggct gctagacatg gctcccttcg gaaatatgcg       120
     tttcgctctt ccggcaaccg caaaaagatg gagtaaccct ggcctataaa aggcgattgg       180
     tcatcggtcc tccctctctt acaaaacggc atcggcgacc gccatcaccg tcatcaacga       240
     agcagtggac aacaacaaac gagtgatact tttaccaccc actgaaggtg aattactgta       300
     atttgaattg attgtagtaa taagttaaat agttaatgaa ctagtggaat taaaagtgaa       360
     actgtagaat aaagtactgt gaattttgct gtgatgtacc cttaagtttc cgaaaagaag       420
     aagaaacaac ttatctgagg cgtgaacatt gtccccgttg tgaggtgtgg tgaattwtaa       480
     ktgagcacag attcgctgtt ctacccgagt tatcaaca                               518
//
ID   BEL-224_AA-I repbase;    DNA;    INV; 6013 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-224_AA_;
KW   BEL-224_AA-LTR; BEL-224_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6013
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 905-905 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4907-5488] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           605..5920
FT                 /product="BEL-224_AA-I_1p"
FT                 /translation="MAEKKMKSKELKRKNTMDSIQRIEDFLVNFDAERDKH
FT                 EITIRLSRLDKLMEAFESIQGEYEAFDDSPAFVAANAKVRAKVEEQFFRVK
FT                 GGLMSKDIPPPNPAQPLNQQVAPAIAHVTGVKLPTIELPRFDGDLNDWLTF
FT                 RDSFSSLIHSSPEIPCVQKFQYLRSALRGDALKLIESLTITANNYALAWEA
FT                 LLDRYSNSYLLKKKHLQSLMVHTKVSGKSPVALRNVVEDFQRHVKILNQLG
FT                 EPTAQWCSLLVQLLCARIDDHTLKEWEEFVSGNEDPTYENLIHFLTRKIRT
FT                 LESLHISAEQPYTSQGKHYPPVRQSKQQSNSSPKINSFSAVEHTQPSCLAC
FT                 SDCHPLVKCPVFEKMQLKDRLNLVNTKRICSNCFRSNHFARNCSSNFSCRH
FT                 CQKRHHTLLHPGFDSPGTNAGNSSSNQVNRPVSPPKQSAANGDVVSNSSGG
FT                 ANVISSNSVVEPRGVNVFLSTIVVKVLDGYGNEHLARALLDSGSQCSLMSD
FT                 RLCQQLRLVRHRIEQPILGVGESQIRAVCSVNTEARSRFGDFSIPLNCLVL
FT                 KKLTSDLPAVTIPITNWNIPNQIDLADPEFNVPRKVDLIIGAEHFYAILQG
FT                 GRFPLGPKAPTLVESKFGWFVSGKASYEAMPHTLVCCMSTLDSLNQNIEKF
FT                 WKLEELDRALPSPTEQYCEEYYKKTVSRNPDGRYIVRYPKKDNFQDMVGES
FT                 LVNSKRRLEGLERRLDSNPILKERYHAFIAEFIELGHMRKVPPTEPEPHTV
FT                 CYIPHHAVQKESSSTTKVRSVFDASAKTSSGFSLNEALLVGPVIQDELLDI
FT                 VIRLRRHKVVLLADIEKMYRQVEIHPDDRPLQRVLWRFNKSDPITKYEMTR
FT                 VTYGLAPSSFLATRTLLQLAEDEGDSFPLAASALKQDFYMDDFIRSVATIS
FT                 QAIQLRKEMDELLRRGGFPLRKWCSNFSEVLEGVPSENLANPSSQTFAPDE
FT                 AIKALGISWEPASDQFRFNVGPFSVDAPITKSKILSVIAQLYDPLGLIAPV
FT                 IVRAKILMQLLWTISIDWNEEVPVEIRTIWESYVEDLTLLSDFRISRLAFD
FT                 VGEVQFHCFADASESAYGTCVYARTLKPNGEVKVVLLASKSRVAPLKKRSI
FT                 PRLELCAAQLGAQLSSRVVAALKMETTPVFYWTDSTVVLHWLRSPPQTWKT
FT                 FVSNRVADIHTLTNSSRWFHVPGVSNPADLVSRGMPVPQFLGSREWIHGPD
FT                 WLGEGEENWPKLNLSQTKLADVECERKTTTLFARSPPPINPLFARSSSFDR
FT                 LLRTTAYCLRFCHYTRKGPKQPTIALTPIEIETARDRLVKIVQTECFKPEL
FT                 TLLRKGKPVANNSSLKLLNPFLDSVGIIRVGGRLKLSTESYTTKHQILLPG
FT                 FHKFTRLLLMSYHCKLIHGGISLTLGVVRNEYWPTNGRRAVRSVIRTCYRC
FT                 TRANPRPLQQPVGQLPLARVTPSRPFASTGIDYCGPVFVKPAYRKSAPTKA
FT                 YIALFVCFSTKAVHIELVGDLSTASFLSALQRFIARRGKPEHVYSDNATNF
FT                 VGAKNELHALYRMLSNTDEINRISSALATDGIQWHMIPPRAPNFGGLWEAG
FT                 VKVAKKHLLRQLGSSPLLYEDLVTILVIIEGAMNSRPLAPLSEDPNDFQAI
FT                 TPSHFLIGSSLQALPYPDMKDVPVNRLRNRYDVIQQKQQLFWYHWRTEYLK
FT                 ELQRLSASNPQRVVLKIGQVMILQDSCLPPVRWPLVRVVELHPGQDGVTRV
FT                 VTIRTPTGATMKRAVTKLCPLPMTDEEEMIYTDEATDHSSPGIVVEDSSKQ
FT                 Q"
XX
SQ   Sequence 6013 BP; 1576 A; 1504 C; 1390 G; 1543 T; 0 other;
     tttttggtgc cgtgaccagg atcacgggtg ttggattttc cctggaatca ccacgacgtt        60
     cggacccaag ctaaccccac tttcaccctt cggaaggatt gttccagata gcagtacctg       120
     ctcaaaaagt acaaggcctg ttgaagacag gctccatgtg agtatctgtc catccatcta       180
     ttgtgctttg agaggtactt cctgggtctt cttttgacca atttaggatt tacacgtgtt       240
     gctgctgttg gtgttgggca cgcggttgct gctgctgccg gtgcataccc tggtattcct       300
     aaccgctacc gcctatctgt tcatcatccc tatcgtgttc gacgaggccc gtcatccacg       360
     cactcggaag gttttcagtg ccgattggat tcagtgcatc ccatctttgc attccaaccc       420
     atcccaattg ccatctttat cggtggttac aactagttcc agtcttacca ttaaatacaa       480
     ggcctgtcat tggacgggca caggtgagtg tcagtccaaa tacttaccgt catccaaaag       540
     gtgcttcctg tgtctcctgt ccattcacag cctccggtga cgtcatcatc acctcctcgg       600
     catcatggcg gagaagaaaa tgaagtcgaa ggagctgaag cggaaaaaca ccatggattc       660
     cattcaacga atagaggact tcctggtaaa cttcgatgca gagcgagaca aacatgagat       720
     aacgattcgt ctgagcagac tcgataaatt gatggaggca ttcgaatcaa ttcaaggcga       780
     atacgaggcg tttgatgatt ctccagcatt tgtggcggca aacgcgaagg taagggctaa       840
     ggtggaagaa caatttttcc gggtaaaagg cggtctcatg tcgaaggata tcccccctcc       900
     caacccagcg caacctctaa accagcaagt ggcacccgcc attgctcatg taaccggtgt       960
     gaagctccca accattgaac tcccacgatt cgatggcgat ttgaacgatt ggttgacgtt      1020
     ccgcgactcg ttctcttcgt taatccactc atcgccagaa attccttgcg tccaaaagtt      1080
     ccaatatttg cgatcggctt tgcgtggtga tgcattaaag ttgatcgaat ccctcacaat      1140
     tacggcgaat aattatgctc tcgcttggga ggctcttctt gatcgctact ccaattccta      1200
     tctactgaag aaaaagcact tgcagtcgtt gatggtccat acgaaggtat ccggaaaatc      1260
     cccagtcgca cttcggaacg tggtagaaga tttccagcgg catgtgaaga ttttgaatca      1320
     acttggtgag ccgacggcac agtggtgtag tctccttgtt cagcttttgt gcgcgcggat      1380
     cgacgatcat actctgaaag aatgggaaga atttgtttct ggtaatgaag atccaactta      1440
     cgaaaaccta atacattttc tgacgcggaa gattcgtacc ttggaatcgt tacacatttc      1500
     ggctgagcaa ccctacacgt cccaaggaaa gcactatccc cctgtcaggc aatcgaagca      1560
     gcaatccaac tcttctccga agatcaactc gttctctgca gtggaacata cacagcccag      1620
     ctgccttgcg tgcagcgatt gtcatccttt ggtcaaatgc ccggtgtttg aaaagatgca      1680
     gttgaaggac cgcttgaact tggtgaatac caaacgtatc tgtagcaact gcttcagaag      1740
     caatcatttt gcacggaatt gttcctccaa tttttcttgc cggcattgtc agaagcggca      1800
     tcacacccta ttgcatccag ggtttgattc tccaggaacg aatgcgggaa attcaagctc      1860
     caatcaggtc aatcggccgg tctctcctcc aaaacaaagt gctgcgaacg gtgatgtagt      1920
     ttcgaattcg tctggtggag caaacgtaat atcctccaat tcggtggtag aaccccgcgg      1980
     cgtcaacgtg ttcctctcta ccatcgtcgt caaggttctg gacggttatg ggaacgaaca      2040
     tctagcacga gccttattag acagtggatc gcaatgtagt ctcatgagtg accgactttg      2100
     ccagcagctt cgattggttc ggcataggat tgagcaacct attctcggtg ttggtgagtc      2160
     ccaaattcga gcagtttgtt cggttaatac cgaagctagg tcgagattcg gagatttctc      2220
     tattccgctc aattgcttgg tactcaagaa attgacttcc gatctccccg ctgttacgat      2280
     cccaataacg aactggaata tccccaacca aattgatctc gccgatccag agttcaatgt      2340
     gcctagaaaa gtggatctca tcatcggtgc ggaacacttt tatgcaatcc tacaaggtgg      2400
     tcggtttcca ttaggcccta aagcaccaac gcttgtagaa agcaaatttg gatggttcgt      2460
     ttcgggaaag gcttcctatg aggcaatgcc ccacacctta gtatgctgta tgtccactct      2520
     tgattcactt aatcagaaca tagagaaatt ttggaagttg gaagaactgg atagagccct      2580
     cccttcacca accgagcaat attgtgagga gtattataag aaaacggtat cgagaaatcc      2640
     cgacggccgg tacattgtaa gatatcccaa aaaggacaat ttccaagata tggtaggcga      2700
     atctttggtc aactccaagc ggcgattaga aggtttagaa cggaggttgg atagtaatcc      2760
     catcctgaaa gagagatatc atgcatttat cgctgaattt attgaactgg gacacatgcg      2820
     aaaggtaccc ccaactgaac ctgaaccaca cacggtttgc tacattcctc atcatgcggt      2880
     tcagaaggaa tccagttcga ctaccaaggt gcggagcgtg tttgacgcct ccgctaaaac      2940
     tagctcagga ttttcattaa atgaagcact acttgtcggc cctgtcatcc aggatgaact      3000
     gttggacatc gttattcgtc tccgaaggca taaggttgta ctattggcgg acatcgagaa      3060
     aatgtaccgc caagttgaaa tccatcctga cgatcgtccc ctgcagcgtg tgttgtggcg      3120
     cttcaacaag agcgatccaa ttactaaata tgaaatgacc agagtgacct atggattagc      3180
     cccatcgtcg tttctcgcaa cacgaacgct acttcaactt gccgaagacg aaggtgattc      3240
     gtttcctctc gcagcatcag cactcaagca agacttctat atggatgatt ttattcgaag      3300
     cgtagcgact atttcacaag ccatccaact gcgcaaggag atggatgaat tgctgagacg      3360
     tggagggttt ccccttagga agtggtgctc aaatttctcc gaagttttgg aaggtgtacc      3420
     atctgaaaat ttagccaatc catccagcca aactttcgcc ccggacgaag cgataaaagc      3480
     tttgggaatt tcttgggagc ctgcatccga ccaatttcgc ttcaacgttg gccctttttc      3540
     ggtagatgct ccaatcacca aaagtaaaat tttgtccgtc attgcccaac tatatgatcc      3600
     cttgggtctg atcgcacctg ttatagttcg tgccaaaatt ctgatgcaac tcctgtggac      3660
     aatttcgatc gactggaatg aagaagtgcc tgtggagata cgaaccattt gggagagtta      3720
     tgtggaggat ttgaccctgc tgtccgactt ccgaatcagt agattggcct ttgatgtggg      3780
     ggaggtgcag tttcattgct tcgcggatgc ctccgaatca gcctacggaa cctgtgtcta      3840
     tgctcggact ctgaaaccca acggcgaagt gaaggtggtg ttactcgcat caaaatcacg      3900
     cgtagcacct ttgaagaagc gcagcattcc cagactggaa ctgtgtgcag ctcaactggg      3960
     tgctcaatta tcatcaaggg ttgtagctgc actgaaaatg gaaaccactc ccgtcttcta      4020
     ttggaccgac tcaacggtag tgctacactg gctccgctca ccaccacaga cttggaaaac      4080
     tttcgtttca aaccgagtag cagacattca caccctgacg aacagttcta gatggtttca      4140
     tgtacctgga gtgagcaacc ctgccgatct tgtttcccgt gggatgcccg tcccgcaatt      4200
     cctaggcagc agagaatgga tccatggccc agattggttg ggagaggggg aggaaaactg      4260
     gccgaagcta aacctttcgc aaacaaaact tgctgatgta gagtgcgaac ggaaaactac      4320
     aactttgttc gctcgcagtc caccaccaat caacccttta tttgcccgtt cgtcatcatt      4380
     tgatcgcttg ttacgaacca ctgcgtattg tttgcgattc tgccactata caaggaaggg      4440
     accaaaacaa ccaacgattg cgctgactcc tattgagatt gaaactgcca gagatcgttt      4500
     ggttaaaatt gtacagaccg aatgttttaa accagaactc accctgctaa gaaaaggaaa      4560
     acctgttgcc aataattcaa gcctaaaatt gctcaaccca tttctggact ctgtgggcat      4620
     aatccgagtc ggtggccggc taaaactatc gacagaatcg tacacaacaa aacatcaaat      4680
     tcttctacct ggttttcaca aatttaccag attgttgttg atgtcatacc actgtaaatt      4740
     gatccacggg ggaatatcac ttacgcttgg cgtagtgcgc aacgaatatt ggcccactaa      4800
     tggaaggaga gcagtgcgta gcgtaatccg aacatgctat cgctgtacgc gtgcaaaccc      4860
     tcgccccttg caacagcccg ttggtcagct tccccttgcc cgagttacgc caagtcgccc      4920
     cttcgcatcc acaggaatcg actattgtgg cccagtattt gtaaaacccg cctaccgcaa      4980
     gtccgccccc accaaagcct atattgccct ctttgtgtgt ttcagcacta aagctgtaca      5040
     cattgagctg gtcggtgatc tatcgacagc ttcattcctc tcagctctcc aacgtttcat      5100
     agctagacga ggaaagcccg aacatgtata ctcagacaat gccactaatt ttgtcggggc      5160
     aaaaaatgag ttacatgccc tctaccgaat gctctcaaat accgacgaaa taaatcgtat      5220
     ctcgtccgct ctcgctactg atggaataca gtggcacatg atcccacctc gtgcccctaa      5280
     cttcggcggc ctttgggaag ccggggtgaa ggtcgcaaaa aagcatctac ttcgtcagtt      5340
     gggtagctca ccgttgctgt acgaggacct agtaacgatc ctagtgataa ttgaaggtgc      5400
     aatgaattcg aggccattag ccccgctttc agaagatcca aacgactttc aagccattac      5460
     gccaagccat tttttgatcg gctcatcctt gcaagcccta ccttatccgg atatgaagga      5520
     cgttccagtg aaccggctta gaaaccggta cgatgttatc cagcagaagc agcagctgtt      5580
     ctggtaccac tggcggacag agtacctgaa ggagcttcaa cgcttatctg ctagtaaccc      5640
     acaacgtgtc gtactgaaaa ttggtcaagt gatgatcctg caagacagct gcctaccgcc      5700
     cgtacgctgg cctctcgttc gtgtagtgga actgcatccc ggacaagatg gtgttacgcg      5760
     cgtggtaaca attcgcactc caaccggagc gactatgaaa cgagcggtga cgaagctgtg      5820
     tccgctgccc atgacggacg aggaagagat gatctacaca gatgaagcaa ctgaccactc      5880
     cagtccaggt atcgtcgtag aagactcttc aaagcagcag tgagtaaatc gattatgttg      5940
     aagattatgt atttcgctag atagatagat tagttttttg tagtgaaatg agacatttca      6000
     ggtggccggc cta                                                         6013
//
ID   BEL-224_AA-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-224_AA_;
KW   BEL-224_AA-I; BEL-224_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-396
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 906-906 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 396 BP; 120 A; 73 C; 68 G; 133 T; 2 other;
     tgtttgatac ggtccacatt agctaataat tttgtaatta gattactttc aatttgaatt        60
     taaaatatca tgaattagaa tccatctcca cgtatagaaa atatcgcata gatgaatctg       120
     cataaaacgc atttgtacaa gctwttgtta cctttttgtg cgttgcatcg attgcacgtc       180
     agaccccttt ttgttcattc ggtttctatt agackatcag taagagttca gatcgccacc       240
     aacagcgtgc gaaataaagt gtaccaagaa aagtattgaa tatatttgcc catttcttta       300
     ataaatcagt tgtgtcgtta gttgagtaaa cgcgtcgtgt tttggagtga ttatttcccg       360
     aaaaataagc ccgtgattcg accccctgat acaaca                                 396
//
ID   BEL-225_AA-I repbase;    DNA;    INV; 6043 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-225_AA_;
KW   BEL-225_AA-LTR; BEL-225_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6043
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 907-907 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5105-5656] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(101..1042,1046..3208)
FT                 /product="BEL-225_AA-I_1p"
FT                 /translation="MVKAGNFTLTPCGVCSETSETNEGMVGCDACDLWFHF
FT                 RCVEVTEESLDGLEKWFCPSELCQKVAEGMLRKPDDRKKKGKSKGAKTLAT
FT                 EESDKSSVKSDNQSGSSLEKRLQALEREQKAKEQEMEIERILREKRIEMDR
FT                 VLKEKQLKIENELREKEMQVEKEMLEKALRDEKAHADRMQRMRESYQNAIM
FT                 GVKNMAMKSRNSVDPDTKFEKGIVEETIPREGEGSSWHHKKMLDTPLRNPN
FT                 VSQRTIPEKQRKSVDKYAQKTEFENSSEDDNDSVNETSDEESEEDCSNSEI
FT                 SSEEREEASECEIEVPKSLGYQKKKKPVSHGLGRQLAGPSKAQLAARNGLS
FT                 KKLPIFTGKPEEWPLFIGSYEASNTACGFNDVENLVRLQESLKGNALESVR
FT                 GQLLLPKSVPKVINKLRQLYGRPEQLLYCHLERVKRLDPPKADKLESYVPF
FT                 GNVVEQMCDHLEAAGLKEHLINPILIQDLVDKLPAGDKREWVRFRSKKKTV
FT                 TLRTFSKFLSKIVAEACAANVNLENQQEFKTKPAPAGKGRGMDKGAVYMHG
FT                 ANEAFAAGEEQKLKPCRACKRTDHRLRFCQDFKAMNFVDRMKIVEKGKLCK
FT                 ICLNDHGNAPCKFKIRCNVEDCRDRDRHHSLLHPVDNLVVINTHIRSSSSI
FT                 MFRMIPVTLHYGEKQVTTLAFLDEGSSITLVERSLTDRLSVEGVKWPLTIK
FT                 WTADITREEPNSKMMNLWISALGNEERLPLQAAQTVEKLLLPKQSLNAGTL
FT                 AAEYSHLRDLPLTSYSDQHPGLLIGLNNLHTIAPIEAKVRKIGEPIAVRSK
FT                 LGWSVYGPTSRKTNDTVIVGHHDAISNNDLYNLLKEHYALEESVVKVVQET
FT                 KDEKRAREILERTTIRVGSHFETGLLWKTDDWIFPDSLPMARRRLKQLEQR
FT                 LERYPELYEKIRQQIEDYQLKGYAHLATEKELAETVPHKTWYLPLNYVQNP
FT                 KKPSKLRLVWDAAATVRGVSLNSQLLKGPDMLTPLTSVLSLFRERRVAFGG
FT                 DIREMYHQLRIREADKHAQRFYSGRTPET"
XX
SQ   Sequence 6043 BP; 1763 A; 1372 C; 1559 G; 1325 T; 24 other;
     gttttagctg ctacaatagg ctgctcaaag aaagtggtgt atttctaagg taaatccgaa        60
     caatctaaaa aatagataat cggagctaac ctcaaacacg atggtgaagg caggaaactt       120
     cacattaacc ccctgtggtg tttgctcgga gacgtcggaa accaatgagg gcatggttgg       180
     atgtgacgca tgtgatcttt ggttccactt tcgatgcgtg gaagtgacgg aagaatctct       240
     tgacggcctg gagaaatggt tctgcccatc tgagctttgc caaaaggttg cagagggaat       300
     gctcagaaaa ccagatgacc gtaagaaaaa aggcaagtcg aaaggagcaa agacgctggc       360
     taccgaagaa tcggataagt ctagcgtaaa atccgataac cagtcaggct cgtcattgga       420
     gaaaagactc caagcgttag agagagagca aaaggccaag gaacaagaga tggagattga       480
     gcgaatctta agggaaaagc ggatcgaaat ggatcgagtc ctgaaagaga agcaactgaa       540
     aattgagaac gagctaagag agaaggaaat gcaggttgaa aaggagatgc tggagaaagc       600
     gctccgtgat gagaaagctc acgccgatcg tatgcaacgg atgcgagagt cataccaaaa       660
     tgcgatcatg ggcgtgaaaa atatggcgat gaagtcacgc aactccgtcg accctgacac       720
     caagtttgag aagggaattg tggaagaaac catcccacgc gaaggcgaag gttcttcatg       780
     gcaccacaag aaaatgttgg atacgccgtt gcgtaatcca aacgtttcgc aacgaacgat       840
     tccggaaaag caacggaagt ctgttgataa atacgcacag aaaacagagt tcgagaacag       900
     ttcagaggac gataacgatt cggttaacga aaccagtgac gaagaatctg aggaagactg       960
     cagcaactcg gagatatcat cagaagaacg ggaagaggca tcggagtgcg agatagaggt      1020
     cccaaagtca ctcggatacc aamataaaaa gaagaagcca gtatcacacg ggctggggcg      1080
     gcaactggca ggaccatcaa aggcgcagtt agccgcgcgt aatggactct ccaagaaact      1140
     ccctattttc actggaaagc ccgaggaatg gccgcttttt attggcagct acgaagcttc      1200
     taatacagcc tgtgggttca acgatgtaga aaacctggtt cgtttgcaag aaagtttaaa      1260
     aggtaatgct ctagagagtg ttcggggaca attattatta cccaagtccg tgccgaaagt      1320
     cataaacaaa ttacgtcaac tttacggtcg tccggagcag ttattatact gccatctaga      1380
     aagggtaaag cgcctagatc ccccaaaggc agacaaacta gagtcttatg taccttttgg      1440
     aaacgttgtg gaacaaatgt gtgaccactt ggaggctgcc ggattgaaag aacatttaat      1500
     caatccgatc ctcatacagg atctggtaga caaacttccg gccggtgata agcgagagtg      1560
     ggttcgattt cgcagcaaga agaaaacagt cactttgaga accttttcta aatttctctc      1620
     caaaatcgtt gcggaggcat gtgcagcaaa tgtaaatctc gaaaaccaac aagaattcaa      1680
     aactaaacct gcgcccgctg gaaaaggaag aggtatggat aaaggtgcag tttacatgca      1740
     cggtgcgaat gaagctttcg cggccggcga agagcagaaa ttaaaaccat gcagagcctg      1800
     taagagaaca gaccatcgtc ttcgtttttg ccaggatttt aaagcaatga atttcgtcga      1860
     ccgcatgaaa attgtagaga aaggcaaact ctgcaaaatt tgcctgaacg accatggtaa      1920
     tgctccatgt aagtttaaaa ttcgatgcaa tgttgaagat tgtcgagatc gggataggca      1980
     tcattcgttg ctccatccag ttgataattt ggttgtaatc aacacgcata tccgctcatc      2040
     tagttctatt atgttccgca tgattcccgt aacattgcac tacggagaga agcaagtcac      2100
     gacgctagca ttccttgatg agggttcgtc gatcaccttg gtcgaacgct cgctcacgga      2160
     tcgattaagc gtcgaagggg ttaaatggcc actaactatc aaatggactg ctgatattac      2220
     cagagaagaa cctaattcca aaatgatgaa tttatggatc tccgctctgg gtaatgaaga      2280
     gaggttgccg ctacaggcag cgcaaacggt ggaaaagctg cttctcccga aacaatcgct      2340
     caacgccggt acacttgctg ctgagtatag ccatctacga gatctgcctt taacttcgta      2400
     ttcggaccaa catcctggcc tgcttattgg tttgaataat ctgcacacca tcgcaccaat      2460
     tgaagccaag gtccggaaaa ttggagaacc gatagctgta cggtcgaaac taggttggtc      2520
     agtttacggt cctacctcac gaaaaaccaa tgacactgtc attgttggtc atcacgacgc      2580
     cattagcaat aacgacctgt acaatttgct gaaagagcat tacgccttag aagagtccgt      2640
     tgtaaaagta gttcaagaaa cgaaggatga aaaaagggca agagaaatct tagaacgaac      2700
     taccatccgt gtcggcagcc acttcgaaac cggcttgttg tggaaaacgg atgattggat      2760
     ttttccagac agcctcccga tggcccgtcg aaggttgaag cagttagaac agagactgga      2820
     aaggtatccc gaactgtacg agaagattag acaacaaatc gaagattatc agcttaaagg      2880
     ctatgctcat ttggcaacgg agaaggagct agcggaaacc gttccgcata agacatggta      2940
     tcttccgctg aattacgttc agaacccgaa gaagccctct aaacttcgtc tggtatggga      3000
     cgctgcagct acggtaagag gtgtgtcact caacagccag ttgctcaaag gccctgacat      3060
     gctcacgccg ttgacatccg tgcttagtct wtttcgtgag cgccgtgtcg cctttggagg      3120
     ggacatacgc gagatgtatc accaactacg cattmgagag gcggacaagc acgcacaacg      3180
     gttctattca ggaagaaccc cggagacgtg agccgagcgt gtacgtaatg gacgtagcca      3240
     catttggatc cgccagctca ccgtgttcag cgcaatacgt gaaaaaccgc aacgcatcgg      3300
     agttttcagc gacgtatcca gaggcggcgg ccgctatcgt tsasaagcat tatgtcgacg      3360
     actattacga tagcgtcgac accgtcgagg aagctattcg tcgtgccaaa gaagtacgtt      3420
     tcatacactc caaggcaggk tttgagataa gaaactgggt ttcgaactct gctgaagtgc      3480
     ttcacagcct gggagaatca aatccgacta aagacgtcca cttcaacgtc gataagacaa      3540
     cggaaaatga acgagttctt ggaataatct ggagcccaaa ccaagactca ttttctttcg      3600
     ccaccgatca tcggccggat ttgcagcctt tcgttgacgg tattcgacga ccaacgaaac      3660
     ggttggtgtt aagctgcgtm atggggtttt tcgacccact tggtctcctg gcgccgttca      3720
     cgatccacgg caaaacactc gtccaggatc tgtggcgaac gggatgcggc tgggacgaag      3780
     aaatcgacga cgawgcmctg cagaaatgga awcgctggac aagtttgttg aagcaggtgg      3840
     cagacatccg aatccctcgc tgttacwtcg gcgatkccca ctcgwctgaa atcgattctc      3900
     ttcagctgca catcttcatg gatgcgagcg agcatgctta cggctgcgtc gcttacttcm      3960
     gggcagtggt ggatggccag gtgaggacwt ctctagtgac ttcccgcacg aaggtggcgc      4020
     cgctgaaacg gcaatcgatt cctcgtctta gagttgatgg ctgcggtact agggtccgwt      4080
     tgctacgcac ggttcaacct cagcactccc ttccaattaa taaatatttc ctctggtcag      4140
     actcccagac ggttctcagc tggatccgct ccgatcagct gaagtataaa caatttgtgg      4200
     cattccgcat cggtgaaatt cgagaacaca caaacatctc tgactggcgt tggattccaa      4260
     cgaaaacgaa catcgctgac gttttaacca aatggggtca agggcctccc tagagtctag      4320
     cagcgmgtgg ttcagcggac cacaatttct ttcggacccc gaagatcaat ggccagtagg      4380
     acctctgccg gccgttgata caagcgaaga gatgcgtgct tgcgttctgc atcatgaagc      4440
     aatacagtcc gwgccagtaa ttaatgttga ctcgacgaat cgcttaggat gtctgctccg      4500
     aagtactgct aatgtgatcc ggttcattgc caattgtcgc cgcaaggtcg caggcaatcc      4560
     aatagtagtg tctagggcta ctgctggtca aatacgtcta ctgaaagcag aaacaatatc      4620
     aatccagcaa cccctgcagc aggaagaact acgtgcagcc gaattagtcc tgtggaggca      4680
     agctcaacgt gagggattcc cggaagaagt cagaatattg gagaaaaacc wgaggcgtga      4740
     tgcatctacg gagcgaatca aaaagtcaag caccctgtac aagatgaccc ccgttatgga      4800
     caccgaagga gtaatgcgcg taggaggaag gttacagcaa gccgagttcg ctmckttcga      4860
     tatgaagcat ccmattattc tacccaaaga acatgcgata accaaaatgt tgattctgca      4920
     gtaccacgaa aaatttgctc atgcgaatag agaaacagtt tgtaacgaac ttcgccagcg      4980
     attccacatc cccaaattac gacaagcgat tcgacaagct gtgaaggatt gtatgtggtg      5040
     tcgagtcaat cgctgcctgc cacaaactcc gatgatggcg cctctaccgg tacaacgagt      5100
     aactccacag cttcgcccgt tcagctctgt aggcgtagac tacttgggtc ctgtcgaagt      5160
     gttggttggc agaaagaagg agaaaagatg ggtagcactc tttacctgcc tagcagtacg      5220
     agcaatacac ctagaagttg tgcacggctt gaccactcag gcatgtttaa tggcaattcg      5280
     acggttcatg tgcaaacgcg gagcacccga agagtttttt tccgacaatg ggactaattt      5340
     caagggtgca tgcggcgagt tggctaggct gaaacagctc aaccaagaat gtgccgagag      5400
     cgtgacgggt accactctaa agtggacttt cataccccca ggtacaccgc acatgggcgg      5460
     catctgggaa cgtatggttc gagcggtaaa ggaagcactg aaagcactta atgacggccg      5520
     aaaacttacg gatgaaattc tgctcactac gttatcagaa gcagaggatg ctatcaacac      5580
     ccgcccgttg gtctacctcc caggattcag cggaaacgga ggcaattaca ccaaaccatt      5640
     ttctccgtgg gacggttagg aatgctgatt taacggtcga cgatactgca gacttcgcgg      5700
     aggctttgag ggaccctaca aacggtcgca atacctagcg atcaaatgtg gcagcgttgg      5760
     tgcaaggagt atctgccgac cataaacatg gatccaaatg ggtcgaagat cgaggcmagt      5820
     actgtaggtg atctggtttc atcgttaacg atggacagcg gaagamctgg actcgaggca      5880
     tcgtcgaaga ggtgttcgaa ggcaacgatg gtaggattcg ccaggtgaat gttcggacga      5940
     caaaaggtgt atctagaagg gctgttgcca acctagcgtt atagaagttc ctggtaaatc      6000
     cggaatctcc gaagggaacc ggaaccggag ttacgggctg ggg                        6043
//
ID   BEL-225_AA-LTR repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-225_AA_;
KW   BEL-225_AA-I; BEL-225_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-571
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 908-908 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 571 BP; 225 A; 88 C; 91 G; 167 T; 0 other;
     tgtacagaaa accacagggc aatcatttaa cggtctagtc tgtattacag atcgttgatt        60
     aaggtgacag tggataagga ataggagaga taaaaacaaa aacaaggata gagtatttca       120
     tgcatacgat cgctaaagta ttcggaaatt cccaaagcac gctaactaat tgaaaattat       180
     tatctaaaat tgaaatttaa agttttctta agtcctaaag tgaaattgtg gtaaactggc       240
     tattgaatta tatatctaaa ttggaaataa catgctatct atctacttat catagggact       300
     aggttttggt taaaatccag tgaattcacc tagaagatta aaactaaagt taaaacttgg       360
     tctatacata atctacgtaa gtaaacataa attatacatc taaacaacat ttgtaaaatc       420
     ctaaatacga attatgtaca gactgaacag gtatctagca agccctgctg accacttcgt       480
     agcacgaggt cctagagtca aactatctat tgtaagtgaa actcattaaa cttattgtga       540
     aacactaata cgaacaaaat atttaattac a                                      571
//
ID   BEL-227_AA-I repbase;    DNA;    INV; 5887 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-227_AA_;
KW   BEL-227_AA-LTR; BEL-227_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5887
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 909-909 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4865-5455] - Integrase core
CC   'GGTTT' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           542..5857
FT                 /product="BEL-227_AA-I_1p"
FT                 /translation="MSSKSSMTNLMQPSKINCLFASNTLMRCGVNLRKLRK
FT                 KLRFWRMHRKGFQQEREDFQTLYCELKASLQSKMPPQQPAAPPTPVQPISS
FT                 SVPISSCVRLPEIKLNEFSGNLDDWVSFRDLFVSLIHTSVQLTQVQKMHYL
FT                 RAALSGEAARIISSLEISANNYLVAWNLLKERFENPCLLVKRHMSALLSIP
FT                 SLKKESAQGLADLADEFNRHVQLLDKLEGAENHWNSFLVERLSQCLDPVTL
FT                 REWETLVSEDGEYPKFQELLEFIHRRSRVIQTLKLSHSANTQSEIKHPKSR
FT                 IVSHVTSDNVPKCVSCKQAHFLFQCEQFRTLSPQQRFEVAKKHGLCLNCLK
FT                 GTHQAKNCSSGSCKSCARKHHSLLHLPPFSSVPGSQPATTSSRSAEASNSQ
FT                 SCQMSHSVPNVVESSPSVELAVASPPVSSSFRSKSSRGNPFPSSSVDFVAN
FT                 SPSTSCQSADVTTQPRQSTVILSTAVIKVKNADNQYVCARALLDSGSQPSF
FT                 ISESLCQKLRLKRTKLNSPVSGIGQSVVNARYAVTLSLKSRFETYTAQLDC
FT                 LVLPKLTVALPSHHIDVSRWRIPKNLPLADPQFNISQGVDIIIGAALFFDL
FT                 LEHDQISLASGYPTLQKTVLGYIVCGKLEQQTPDTTNMQSCNICVEDRLDT
FT                 QLQRFWEIENFDTGKAYTPDEQYCEDHFQSTVARDNSGRYVVRLPLKEEKL
FT                 SMLGDSHTTALRRFQQMEKRFAVDEGLRHSYTEFMEEYERLGHMELAPVAS
FT                 RNPQFFLPHHAIQRPESSTTKTRVVFDGSCRGAASLSLNEALYVGPTVQPA
FT                 LFSTVVNFRLPRFVITADAEKMFRQIWVHPDDRKFQQILWRGSSTEPIRTY
FT                 QLKTVTYGLASSPFHAARVLIQLANDEGHRFPLAVPVILKGTYVDDVITGH
FT                 DDHDTMAETCKQLSEMMKSGGFVLRKWASNYKTVLIHIPEELWETSAELEL
FT                 DRSEAIKTLGLLWFPQRDVFKFKVPTLPDLPVVTKRIVVSEMSQLFDPLGL
FT                 LGPVVVNAKMFIQSLWAANLSWDSELAEESATWWRNYRADIKQLQQLVVPR
FT                 RVLWNTQHKYSIHCFCDASQKGYGCCVYIVSPDELGQLHSHLLTSKSRVAP
FT                 LRGQSIPRLELCAALLGSQLVDNLLANTNIDASVTFWTDSSIALHWIKSRS
FT                 NSWKVFVSNRVAEIQRLSKNSTWMHVPTDLNPADHISRGMLASQILTDKLW
FT                 WHGPAFLTSPVEQWPKCAVLMPTKSEVEEEMRPLVSLPLMSEDASIFSEFS
FT                 ELAKLIRFVAYCFRFRNNCKLPKNQRVLSSLSPEEVDFALKSMIRLAQRQE
FT                 FPTEIGLYSRNKSDSTANIASKSPLKNLNIFIDEFGLLRIDGRLKKLNAPF
FT                 DTRHPILLPANHKLSWLIARSVHLQTLHGGPSLLLATIRQRFWPLRGRDLA
FT                 RKVVRQCVTCFRCNPTPASQIMAPLPSVRLRPARAFTYAGMDYCGPFYVRP
FT                 LIGKGTSVKVYVALFVCLVVKAVHLEVVPDLSSVACIAAVKRFVARRGRVL
FT                 ELHCDNATTFVGADRELRQLRKEFQLQFKSPEWGDYCSGNGITFRFIPARS
FT                 PHFGGIWEAGVKSFKYHFRRIMGQKAFSMDQLLTVVAQIESVLNSRPLVPI
FT                 SDSPDDLSALTPGHFLIGEPLVSIPEPDLLQKSPNRITRFQEMQRSVQDLW
FT                 RCWSRDYVSQLHQRSKWRRPSVDVRKGQLVLLKNENYPPLQWPLGRIVETI
FT                 AGSDGRVRVVVVKTASGEYKRAITEIAVLPIDSDDEEEKTSLLPSTSDAVD
FT                 G"
XX
SQ   Sequence 5887 BP; 1432 A; 1569 C; 1387 G; 1497 T; 2 other;
     ttttggtgcc gaaacccggg attgaggttg caagatwagt gaacctaacc tcaccaccac        60
     gtggctcgaa ggttatctcg tgctccattg ttccaacgat caggatctgg ttcattggct       120
     gatcgaatcg tcatcgcatc atctcgtcgt catcgtcgtc gtagccgctg actggtcatc       180
     accatcagcg tgctggctgt gctcctcatc ggtagcacac catcctcatc atcatcttcg       240
     tcgtcgccgt cgtcatctcg ttgctgattg ctccagtagc agcagtgtgc cctatcggca       300
     taaccatcat cgcttcgtcg tcatcatcaa gagtctccgt gcagcgtgcg ccggacgaga       360
     ggtactcagc gcccaaaggg gagattgtgg taaggtagca gcagtagcgg aaaacacagg       420
     tacttgattc attttttcgg tgaacggtgc gataaaatga tgcctactga gaaggcgacc       480
     gccaagcaaa caaagttaaa acttctttac cgtcggcgga caaacatttt gggttccgcg       540
     aatgtcatca aaaagttcaa tgacgaattt gatgcaacca agcaagatca attgcctatt       600
     cgcgtccaac accttgatgc gttgtggcgt gaatttgagg aaactcagga agaaattgag       660
     gttctggagg atgcacagga agggttttca gcaagagcgg gaagatttcc aaacccttta       720
     ctgcgagttg aaagcgtcgt tgcaaagtaa aatgcccccg caacaacctg cagcaccccc       780
     cactcccgta caaccaatct cttcgtcagt accgatctcg tcgtgcgttc gtctgccaga       840
     aatcaaactg aatgagttct ctgggaatct cgacgattgg gtttcgtttc gcgatctgtt       900
     tgtctcgctc attcatacga gcgtgcagct tacgcaagta cagaaaatgc actatttgcg       960
     tgctgcgctt tctggcgaag cagctcgcat catttcttcg ctcgagattt cagccaataa      1020
     ctatctcgta gcttggaatc tgttgaagga acgcttcgaa aatccatgct tattagtgaa      1080
     gcgacacatg tctgcattgc tttcgattcc ttcactgaag aaagaatctg cgcagggtct      1140
     tgcagatctt gccgacgaat tcaatcgtca cgtacagctg ctggataaac tcgaaggggc      1200
     tgagaaccac tggaattctt ttctggtcga gcgactgagc caatgtctcg accccgttac      1260
     actccgtgag tgggaaacac tggtttccga agatggcgaa tacccgaagt ttcaagaact      1320
     tctagagttt atccacagaa gatcgcgtgt tattcaaacc cttaagctct cccattcggc      1380
     aaatacccaa tccgagataa aacatcccaa atcacgaatc gtttcccacg ttacttcgga      1440
     caatgttccc aaatgtgtca gctgcaagca ggcacatttc ctgttccagt gtgaacaatt      1500
     tcgaacgctc tctccccaac aacggttcga agttgcgaag aagcacggcc tgtgtcttaa      1560
     ctgtctgaag ggaacacatc aagcgaagaa ttgctccagc ggttcctgta aaagttgtgc      1620
     aaggaaacat cattcgttac tacatctgcc accgttttcg tcagttcctg gttctcaacc      1680
     agcaacaaca tcaagtagat ccgctgaagc aagcaattcg caatcgtgtc aaatgtcgca      1740
     ttccgttccg aacgttgtcg aaagctctcc gtcggtagag ctcgccgttg cctcaccacc      1800
     tgtctcgtcg tcgtttcgtt cgaagtcgtc gcgcggtaat cctttcccaa gttcgtcggt      1860
     tgatttcgtt gccaattctc catccacttc ctgccaaagt gcagatgtta ctacccaacc      1920
     tcgtcagtca acggtcattc tgtcaacagc agtgataaaa gtgaaaaatg cagataacca      1980
     gtatgtttgc gccagagccc tattggatag tggatcacag ccaagtttca tctctgaatc      2040
     actgtgtcaa aaactccgtt tgaagcgaac aaagctgaat tcaccggtca gtgggatcgg      2100
     acaatccgtc gttaatgcgc gctacgctgt gacactatcg ctaaaatctc gtttcgaaac      2160
     ctacactgct caattagact gcctagtatt gccgaagtta accgttgcat tgcccagtca      2220
     ccacatcgac gtctcgcgct ggagaatccc gaagaatctt cctctcgctg atccacagtt      2280
     caacatcagt caaggtgtgg acatcatcat cggagctgcc ctgttcttcg atcttctaga      2340
     gcacgatcaa atctcgctcg cctctgggta tccgacgttg cagaaaacgg ttcttggata      2400
     catcgtctgt gggaaactag agcagcaaac gcccgatacc acaaacatgc agtcctgcaa      2460
     catctgcgtt gaagatcggc tcgataccca gcttcagcga ttttgggaaa tcgagaactt      2520
     cgatacaggt aaagcataca ctccagatga acaatactgc gaagatcact tccaaagcac      2580
     tgtcgcccgt gacaattcag gtcgctatgt tgttcgtctt cctctcaagg aagaaaaact      2640
     gtcgatgctc ggagattcgc acaccactgc gctccgaagg ttccaacaaa tggaaaaaag      2700
     gtttgccgtc gatgaaggtc tgcgtcacag ttatacggag ttcatggagg agtatgagag      2760
     gttgggtcac atggagttgg ctcccgtcgc gtcgcgtaac ccacagtttt tcctcccaca      2820
     ccatgccatc cagcgtccag agagttcgac caccaaaacc cgtgtggtat tcgacggttc      2880
     ctgtcgtgga gctgcctcac tatcgctgaa cgaggctcta tatgtcggac ctactgttca      2940
     gcctgcgctc ttttcaactg tcgttaattt tcgtctgcct cgcttcgtca taacagccga      3000
     cgcagagaaa atgttccggc agatttgggt ccacccagat gaccgtaaat tccaacaaat      3060
     cctctggcgt ggaagttcaa ckgaaccgat ccgcacgtat cagttaaaaa ccgtcaccta      3120
     cggtcttgca agttcgccgt ttcatgctgc tcgagtctta atccagttag ccaacgatga      3180
     aggtcatcgc ttcccgctgg cggtgccagt gatactgaaa ggcacctacg tagacgacgt      3240
     tattaccgga cacgacgatc acgacacaat ggctgaaact tgtaagcagc ttagtgagat      3300
     gatgaaatcc ggcggtttcg tactccgtaa gtgggcttcg aactacaaaa cagttctcat      3360
     ccacattcct gaagaacttt gggaaacctc tgcagaattg gagctcgatc gctcggaagc      3420
     tatcaaaacc ttggggttgt tatggttccc ccaacgggac gttttcaagt tcaaggtccc      3480
     tactctacca gatcttcccg tcgtgactaa aaggattgtc gtctcagaga tgtcccaact      3540
     tttcgaccca ctcggacttc ttggaccagt ggtcgtaaac gccaagatgt tcattcagtc      3600
     tctctgggca gctaacttgt cgtgggattc tgagcttgca gaagagtcag caacctggtg      3660
     gagaaattac cgtgctgaca tcaaacagct tcaacagctg gtagtcccga ggagggtact      3720
     gtggaacact caacacaaat attcgatcca ctgtttctgc gacgcctcac agaaaggcta      3780
     tggatgttgt gtctacatcg tatcgccgga tgagctaggc cagctccatt cgcatctact      3840
     cacatcgaag tctcgtgtcg cacctctacg gggacagtca attccacgct tggagctttg      3900
     cgcagctctc ctcggaagtc aattggtgga taatctcctg gctaatacta atatcgatgc      3960
     gtcagtcacg ttttggaccg actcgtctat cgcacttcac tggatcaaat ccagatcgaa      4020
     ttcctggaag gtctttgttt caaaccgagt cgcggagatt cagcggctgt cgaagaattc      4080
     aacgtggatg cacgtaccga ctgatttgaa ccctgctgac cacatctccc gaggaatgct      4140
     tgcaagccag atccttacag acaagctgtg gtggcatggt ccagcgtttc tcacatcccc      4200
     cgtcgaacag tggccaaagt gtgcggtttt gatgccgacc aagtcggaag tggaagaaga      4260
     gatgcgtccg ttggtatccc tacctttgat gagcgaagat gcatccatct tcagcgaatt      4320
     ctctgaacta gccaagctaa taagattcgt cgcttactgc tttcgattcc gaaacaactg      4380
     caaacttccc aagaatcaac gagttctttc atcactgtcg cctgaagaag tggattttgc      4440
     actgaagtca atgattcgtc ttgcccagcg ccaggaattt ccgacagaaa taggcttgta      4500
     tagccgcaat aagtcagaca gtactgctaa tatcgcatcg aaatctccac tcaagaatct      4560
     caatattttc atagacgaat tcggacttct tcggattgat ggacggctga agaagctgaa      4620
     tgcccctttc gacacacgtc atccgattct gttaccagca aaccataaac ttagctggtt      4680
     gattgcaagg tccgtacatc tgcagactct tcacggtgga ccttcgctgt tactcgctac      4740
     aattcgtcaa cgcttttggc cacttcgggg tagagacttg gctcgtaagg ttgttcgtca      4800
     atgcgttacc tgtttccgat gcaatccaac acccgcaagt cagattatgg caccgttgcc      4860
     atcagttcgc ctcagaccgg cccgagcctt cacttacgct gggatggatt actgtgggcc      4920
     gttttacgtt cgtccgctaa ttgggaaagg tacgtcggta aaggtttacg tcgcgttgtt      4980
     cgtctgtttg gtggtgaagg ccgtacacct cgaagttgtg ccggatctgt cgtccgtcgc      5040
     ttgcatcgcc gcagttaaac gcttcgtggc gcgtcgcggt cgtgttctcg agttgcattg      5100
     tgacaacgcg actacgttcg tcggtgccga tcgcgagctc cgacaactgc gaaaggagtt      5160
     ccagctgcag ttcaagtcac cggaatgggg cgattactgc tccggaaatg gaatcacctt      5220
     ccgcttcatt cctgcacgct ctccacactt tggaggcatt tgggaagctg gagtgaaatc      5280
     atttaagtat cactttcgtc gtattatggg acagaaggct ttctccatgg accagctcct      5340
     aactgtcgta gcccagattg aatctgtcct taactcccgt cccctcgttc ccatttccga      5400
     ttctcccgat gatctgtccg ccctaactcc tgggcatttc ctgattggag agcctcttgt      5460
     ctccattccc gaaccggatt tgcttcagaa gtcgcctaat cgcatcaccc gtttccagga      5520
     gatgcaacgc tcggtccagg acttgtggcg ctgctggtca cgggactacg ttagccagct      5580
     acatcaacgc agcaagtgga gacgcccatc cgtagacgtt cggaagggtc aactggtact      5640
     actgaagaat gaaaactacc ctccgctaca gtggcctctt ggtcgcatcg tagaaaccat      5700
     tgctggttca gacggccgag tccgtgtcgt tgtagtcaag acggcttcgg gagaatacaa      5760
     gcgggctatc accgagatcg ccgttttacc gatcgactcc gacgatgaag aggagaaaac      5820
     ctcgctccta ccttcaacta gcgacgcggt agatggttga aacggacggt ttcaacggcg      5880
     gccggca                                                                5887
//
ID   BEL-227_AA-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-227_AA_;
KW   BEL-227_AA-I; BEL-227_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-362
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 910-910 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 362 BP; 107 A; 88 C; 65 G; 97 T; 5 other;
     tgttgagagc agcatctgta attactaact tawaattaaa cacmcagaat tgtacaaaca        60
     tacwwacctt aacaacatat ataccttgat ccctattgtg attttgcatt gaacacatac       120
     actcgtgaac gctasacaga taacctaaca gaaagtgccc taagatcagt ctaataaaag       180
     ccatcgtgaa gtgaagtgcg cgttccacat ctctcgaagt ttcacggtcc gagaacaagt       240
     tcttacagtt tgtcggtcaa gccaagcttg tccgtaatcg aagctctccc acacgtgtcc       300
     gaaagtgtcg taggccagtg tccggtcgtt ttccgtcgaa ttcgcaatct tttcccgtaa       360
     ca                                                                      362
//
ID   BEL-228_AA-I repbase;    DNA;    INV; 6136 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   26-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-228_AA_;
KW   BEL-228_AA-LTR; BEL-228_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6136
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 911-911 (2011).
XX
RN   [2]
RP   1-6136
RA   Bao W.;
RT   "Sequence updated with consensus and termini.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
DR   [2] (Consensus)
XX
CC   [2]: Consensus. LTRs are 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..6102
FT                 /product="BEL-228_AA-I_1p"
FT                 /translation="MSSREAHGSGKNVKLSRKGKSSKAKIDEVVNSGDVSI
FT                 VVTGVPEETSATDRTLAGRTCKSCKGPDSDEMVQCDNCDKWHHFGCVGVTE
FT                 EVADHSWSCPKCVSAKWAQRSGSTSSKQLPSAYDAKDSTGTQEPKTSMGSN
FT                 TKDQRSSTVDAVGGANDGVEPRDIGKPFSKVRQQIDNKEVIISGASSALSS
FT                 SSSRRSSRTLLKLQMQKLEEEKKLAKEFLERKYALLEEAASERSSKTSSRA
FT                 SSSLSRVRDWVHGNNKQREGNMPSYPEVFDPERHSTQNPCAIEMLNQLAVP
FT                 REQSFSSRQDHWTNGRTFSIRAMSSGAANPTSTPTVGICSQRTSVDRAVFA
FT                 THREVEDLTRPHVPISSVVGDPYRPSCSRREPRVEEDFDDPCPLSRKQLAA
FT                 RQAISKDLPSFSGNPEDWPIFFSSYTNTTAMCGFTDAENTVRLQKSLTGKA
FT                 YDAVKSRLMHPSNVKGVIDTLRMRFGQPEAIVHSLIAKITALPSLKEDKLE
FT                 TIMDFAVEVQNFCAIVDACELEEHMYNVSLLHQLVSRLPPSIKLDWAKYRY
FT                 TLPRVNLATFGNWIYSLAEAASTVTIPAIQEFKPSRNDSRPTKKSAGFLNA
FT                 HLESNETELKPDIDNVRNDMNGCLVCKSSCKELWKCKQFLELSRDSRWAVV
FT                 RDFDLCRRCLQKHNGVCKARACGKNGCTRKHHELLHNENQKENESNPKSDG
FT                 CERHQPSTSSARHECNSHRSSTNNSLFRYLPVVLYGKSGCIQTFAFLDEGS
FT                 KLTLMDEELANELELDGVESPLYLRWTGGTERCEKDSRAISVSIAGVYTGA
FT                 KRFKLDDVRTVQGLQLPRQSLDAVKMMERYPYLRGLPIEPYEAARPRILIG
FT                 LKHAHVSLVLQCREGKVEQPIAIKTRLGWTVCGGSDNENVPNMVHYSFHVG
FT                 SREDHLDEDLHQAMKEYFALDSMGVMKPSHALLSLEDQRSNKMLESLTNLN
FT                 GNRYETGLLWRYDDFRLPDSRPMALRRYHLLEKRMAKNPELGKALDQKIEE
FT                 YIAKGYIRQLTKEEEEQPVSRVWYLPVFPVFNPNKPGKIRIVWDAAATIFG
FT                 VSLNSVLLKGPDQLCSLFSILLQFREHPIGLTGDIREMFHQIQIREQDRSC
FT                 QRFFWRDKFGKAAVFEMDVMTFGACCSPSSAQFVKNLNAGRFVGKYPQAVE
FT                 AIIKRHYVDDMLVSVKTEKEAVDLAHQVKYIHAQGGFEIRNWISNSQLVLQ
FT                 SLGEDDVKSKNLDLSAEVIAEKVLGLWWCTDKDTFTYKVGWTRHDEMLLQG
FT                 QRCPTKREVLRVLMSIFDPLGLIAHFLIYLKMLLQEIWRSGTQWDEEISDT
FT                 LFAKWQQWLRVLPEVEGVEIPRCYHIRKFTDCELHTFVDASENGFAAVSYM
FT                 RFSNGKEVECALVTAKTRVAPLKFQSIPRLELQAAVLGARLARTVAEALSI
FT                 KATRRLFWTDSRDVLCWINSDHRRFTQFVAHRVSELLDSTEASEWRWVSTK
FT                 ENVADDATKWQGRPNLTTSSRWFKGPEFLWRSESCWPQQIEISKTTQEELR
FT                 PHLVAHITTMAPAICLTNYSSWKRLVNVVGFLLRFSANCRRKLQHHPIHTG
FT                 PLCMEELSAAEKILIRQAQRDNFVGEIASLTRGQQISRSSSLFKSSPFIDD
FT                 SGILRMRGRTTACSFITEEAKNPIILPRDHHLTTLIINHFHNKYHHLNQDT
FT                 VVNELRQKFSIPRVRVSCAKVRRNCQRCKNDHAIPSAPIMADLPDARLAAY
FT                 SRPFTHVGIDYFGPMEVAVGRRVEKRWGVLATCMTTRAVHIEIAHSLNTDS
FT                 CIMAIRNMIARRGIPRYIYCDRGTNFVGTSRELSRVEGELDLETMMKEFTT
FT                 SETAWCFNPPMSPHMGGCWERLIRSVKNSLKSLNLPRRPSDEVLRNALTEI
FT                 ENVINSRPLTHVPIEDNAAPALTPNHVLLGTSNGSKPLTMLSDSGTIVRQC
FT                 WRTSQIIANQFWRRWIAEYLPEITRRTKWYSSRSPSVKIGDVVVIVDSTFP
FT                 RNCWPKGRVIATRPGRDGEVRSATVRTATGVYERPVVKLAVLDVMREDK"
XX
SQ   Sequence 6136 BP; 1756 A; 1408 C; 1547 G; 1425 T; 0 other;
     atattataat tttcgtttat tattgcgaaa atgtcgagtc gcgaagcaca cggttccggg        60
     aagaatgtca agttgtcgag gaagggcaag agttcaaaag caaaaatcga tgaagtggtc       120
     aatagtggtg atgtgtcgat agtggtcacg ggagttcctg aggagacatc ggcgacggat       180
     cggacattag ctggtcgaac ttgtaagtca tgcaaaggtc cagatagtga cgagatggtg       240
     caatgtgaca attgcgacaa gtggcatcac tttggctgtg ttggagttac ggaggaagta       300
     gcagaccata gttggagctg tccaaagtgt gtatctgcaa aatgggctca acgatcggga       360
     tctacttcca gcaaacagct tccatcagct tacgatgcta aggacagcac gggtacacaa       420
     gaaccgaaga cgtcaatggg atcaaatacg aaagaccagc gaagttccac agtggatgcc       480
     gtcggtggtg caaatgatgg agttgaacca cgggacatcg ggaagccttt cagcaaggtt       540
     cgacaacaga tcgataacaa ggaagtgatc atcagcggtg cgtctagtgc cttgtcgtct       600
     tcatcgtcac gcaggtcatc tagaaccctt ctaaagcttc aaatgcagaa gttggaggag       660
     gaaaaaaaac tggccaaaga atttctcgaa cgaaagtatg ccttgcttga agaagcagca       720
     agcgagagga gctccaagac tagttccaga gctagtagca gcctaagccg agtacgcgat       780
     tgggtgcatg gcaacaataa gcaaagagaa ggaaatatgc cgagttaccc cgaagtgttc       840
     gatccagaga ggcactctac acaaaatccg tgtgctatag agatgctgaa tcagttggca       900
     gtaccgagag agcagtcatt ttcttcacga caggatcatt ggacaaacgg gagaaccttt       960
     tcgataagag cgatgtccag tggagctgca aatccaacca gcacgccgac tgttggaatc      1020
     tgcagtcaac gtacatcggt cgacagggca gtgtttgcaa cgcatcgaga agtggaagat      1080
     ttaacacgtc cacacgtgcc aatatcaagc gtcgttggag atccatatcg accgtcatgt      1140
     tctagaagag agccaagagt tgaagaagac ttcgatgacc catgccctct ttcgagaaag      1200
     caactggccg cgcgtcaagc gatatctaaa gacctgccaa gcttttccgg gaatccagaa      1260
     gattggccca tatttttctc gtcgtatacc aacacaactg ccatgtgtgg gtttacggac      1320
     gcagaaaata cagtccggtt acagaaaagt ctaacaggaa aagcgtatga tgcagtgaag      1380
     agccgtttaa tgcatccgtc taatgtgaaa ggagtaatag acacgctgcg catgcgtttc      1440
     gggcagcccg aagccattgt ccattcgctc atagcaaaaa tcacagctct gccgtcactg      1500
     aaggaagaca aactcgaaac gattatggat tttgcggttg aagttcaaaa cttttgtgcc      1560
     atagtcgatg catgcgaatt ggaagagcac atgtataatg tatcactgtt gcatcaactc      1620
     gtgtccagat tgccgccatc aataaaacta gattgggcca aatatcgtta tacactacca      1680
     agagtcaact tggcaacctt tgggaactgg atctattcct tggcggaagc ggcaagtact      1740
     gtgactattc cagcgattca ggaattcaaa ccctcgcgca acgactcaag acctactaag      1800
     aaaagtgccg gattcttgaa cgctcacctg gaatcaaacg aaacggaatt aaagccagac      1860
     atcgacaacg ttcggaatga tatgaacggg tgcctagttt gcaagtctag ttgcaaagaa      1920
     ctgtggaaat gcaaacaatt tttggagctg tccagagact ctcggtgggc cgtagtacgt      1980
     gacttcgatt tgtgtcgacg atgcctgcaa aaacacaatg gtgtatgtaa ggccagagct      2040
     tgcggaaaga atggctgtac gcgtaaacac cacgagctgc ttcataatga aaatcaaaag      2100
     gaaaacgaat caaatccgaa gagtgatgga tgtgaacggc accaaccgtc tacgagttcg      2160
     gcacggcatg agtgcaatag ccaccgatcc agcaccaaca attccctgtt tcgttacctt      2220
     ccagtcgtac tctatggaaa aagcggttgt attcagacgt ttgccttctt ggacgaaggc      2280
     tcaaagctta ctctcatgga tgaggaactt gccaatgaac ttgagctgga tggagttgaa      2340
     agtccattgt atcttcgatg gactggtggt accgaacgat gcgaaaagga ttctcgcgct      2400
     atttctgttt cgattgctgg cgtatacacc ggagcgaaaa ggttcaaatt agatgatgtg      2460
     cggaccgtac agggactaca attgccgcga caatccctag atgctgtgaa aatgatggaa      2520
     cggtatccgt atttgcgggg cctacccata gagccctatg aagcagcccg tccacgaatt      2580
     ttgattggac taaagcacgc ccacgtcagc ctagtgctgc agtgtcgaga aggcaaagtg      2640
     gaacaaccaa tagctataaa gacgcgacta ggctggaccg tatgcggtgg cagcgataac      2700
     gaaaacgtac caaatatggt gcactattcg tttcatgtag gatcgcgcga agatcatttg      2760
     gatgaggacc tgcaccaggc aatgaaagaa tatttcgctc tagacagtat gggagtaatg      2820
     aagcctagtc atgctctact ttcattagaa gatcaacgca gtaacaaaat gctggaatcg      2880
     ttaactaact tgaacggcaa tcgttatgag acaggtttgc tctggcgcta tgatgacttc      2940
     cgtcttccgg atagtaggcc tatggcgctt cgccgatatc atctactaga gaagcgtatg      3000
     gccaagaatc cagaacttgg gaaagccctg gaccagaaga ttgaagaata cattgctaaa      3060
     ggatacattc ggcagttaac caaagaggaa gaagagcaac cggtttcacg tgtctggtat      3120
     ctgccagtat tcccggtgtt caatccgaac aaaccgggga aaatacggat agtctgggac      3180
     gcagcagcca ccattttcgg tgtatcccta aactctgtcc tcctgaaagg cccagatcag      3240
     ctgtgttcac tgttttccat acttctacaa ttcagggaac atccaattgg gcttaccggt      3300
     gacatacgcg aaatgttcca ccaaatacaa atccgggaac aggatcggtc ctgtcagcgc      3360
     tttttctgga gggataaatt tggaaaagcc gccgttttcg aaatggatgt catgaccttc      3420
     ggagcgtgct gttcgcctag cagtgcgcag ttcgtcaaaa atctgaacgc cggacggttc      3480
     gttggtaaat acccacaagc ggtagaagct ataatcaaac ggcactacgt agacgatatg      3540
     ttagtgagcg taaagacaga gaaagaggcg gtcgatttag cgcatcaggt caaatatatc      3600
     cacgctcaag gcggtttcga gatccgcaac tggataagta attcccaatt ggttttgcag      3660
     tcgttaggag aggatgacgt gaaatcgaag aatctcgatc tatcagccga ggtgatagca      3720
     gaaaaagttc taggactgtg gtggtgcact gacaaggata cgttcacgta taaagtaggc      3780
     tggacacgcc acgacgaaat gcttctacaa ggacaacgtt gtcccacgaa aagagaagtt      3840
     ctgagggtac tcatgtcgat tttcgatccc ctcggtttga tagctcattt tctgatttat      3900
     ctcaagatgc tattgcaaga aatttggcgt tctggaaccc aatgggatga agaaatcagc      3960
     gatactcttt ttgcgaaatg gcaacagtgg ttgcgagtgc tacctgaagt agaaggcgtc      4020
     gaaataccac gatgctacca tattcgaaaa tttaccgatt gtgaactaca cacgtttgtt      4080
     gacgccagtg aaaacggatt cgctgctgta tcgtatatga ggttttctaa cggcaaggaa      4140
     gttgaatgtg cactagtcac agctaaaact agagtcgcgc cattaaagtt ccagtccatt      4200
     cccagacttg agttacaggc cgcagttctc ggagcgagac ttgcacgaac agtagcagag      4260
     gcactatcca ttaaagcaac tcgacgcttg ttctggacag attctcgaga tgtactgtgt      4320
     tggatcaact cagaccaccg tcgattcaca caattcgtag cgcatcgagt tagcgagctt      4380
     cttgattcca cggaggcatc cgagtggcgc tgggtatcaa cgaaggaaaa cgtggctgac      4440
     gacgccacga agtggcaggg acgacccaac cttaccacta gcagcagatg gttcaagggc      4500
     cccgaattcc tctggaggag tgaatcatgt tggccacagc agattgaaat cagcaagact      4560
     acacaagaag agctccgtcc acatctggtt gcacacatta caacgatggc gcctgcgatt      4620
     tgtttgacca attattccag ctggaaacgt ctagtcaacg ttgtagggtt tttgcttcgg      4680
     ttttcagcca actgtcgacg caaattgcag catcatccaa tccacactgg tccattgtgt      4740
     atggaggagc taagtgcagc cgaaaagatt cttatacgtc aagctcaacg ggataacttt      4800
     gtcggggaga tcgccagcct gacccgaggt caacaaatct cgagaagcag ttctctcttt      4860
     aaatcatctc ctttcatcga tgatagcggt atcttgcgca tgcgtggtcg taccaccgca      4920
     tgttccttca ttaccgaaga agcgaaaaac cccatcattc taccccgtga ccatcatcta      4980
     accactttaa tcatcaacca cttccataac aaatatcatc atctcaacca agacactgta      5040
     gtcaatgaac tgcgtcagaa gttttcaatt cctcgagtac gcgtttcatg tgccaaggtg      5100
     agaagaaact gtcagcgctg caaaaacgat catgccatac cgagcgctcc aataatggcc      5160
     gatttgcccg atgcaagatt agctgcctac tctcgaccgt tcactcacgt aggaatagac      5220
     tattttgggc caatggaggt cgcagtcggt cgaagagttg agaaacgctg gggagttctg      5280
     gctacctgta tgactacgcg agcagtgcac attgagatag cccattcgct caacacagac      5340
     tcgtgcataa tggccattcg taacatgatc gcccgccggg gaattcctcg ttacatatac      5400
     tgcgaccgag ggaccaattt cgttggtacg agcagagagt taagccgcgt tgaaggggag      5460
     ctcgaccttg aaaccatgat gaaggagttc accacttcag aaaccgcttg gtgcttcaat      5520
     ccacctatgt cgccgcatat gggtgggtgc tgggagcggc ttatccgcag tgtgaagaac      5580
     agtttgaaat ctctaaacct gccacgtcga ccatcagatg aagttttgcg caacgccctg      5640
     accgaaatcg agaacgttat taattcgaga ccactcacac acgttccgat cgaagacaac      5700
     gctgcccctg ctctcacccc taaccacgtt ttgctaggca cctctaatgg gtccaaacca      5760
     ctcaccatgc tcagcgacag tggtaccatc gtacgtcaat gctggcgtac gtctcagatt      5820
     atcgccaacc agttctggag aagatggatt gctgagtatc taccggagat tactaggagg      5880
     acgaaatggt acagctccag atcgccatca gtgaagatcg gcgacgtagt cgtaattgtg      5940
     gactcaacat tccctcgcaa ctgttggccc aagggtaggg tgatcgcaac tcgccctggt      6000
     cgagatgggg aagtacgatc agcaacggta aggactgcta ccggtgtcta cgaaagaccg      6060
     gtggttaagt tagctgtatt agacgttatg cgcgaagata agtagtcgat cagcaggtcg      6120
     acgtacctgg ggggag                                                      6136
//
ID   BEL-228_AA-LTR repbase;    DNA;    INV; 776 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   26-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-228_AA_;
KW   BEL-228_AA-LTR; BEL-228_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-776
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 912-912 (2011).
XX
RN   [2]
RP   1-776
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated with consensus.
XX
SQ   Sequence 776 BP; 277 A; 149 C; 135 G; 215 T; 0 other;
     tgttggcaag ccccttgttg ccagcgcgca ccttccacac agcaacctta aacccctaca        60
     cacaccaact tacgccgaga tgacaggtaa ttccaacagc tgtcgatcgg tgagtaaaga       120
     taaagagcaa aacataagac gaatagttag tctcccaaat attgattctc tgaaataatt       180
     cttgaattac gagtgaattc gttcaaatat cctttatttt atttctaaaa gtgtgaatta       240
     acaacacttg gaggtaactg tcatatatta tgaggaaaac aatagtttaa aattagtaaa       300
     tctacactag gtgaattgga tactacgagc atacgtagaa ggtgatcata accataaata       360
     tatcgattgc attgcatttg tcttgaactg tgacggtaag aaatcaagta gaataacttg       420
     aatgtctaat aatgatttaa atatttagta tcccaaaccg gtgccaagtt tgcgacccga       480
     agagactacg actcagactg actagatagg aaactaaacg taagtgacct aagactatta       540
     cgaacactgg catgcattaa cctaagagac acataagaca taaattaact aaaaactacg       600
     acgctatgta aacaaaacta agactaatag actatgtatg tatttactat tgttaccatt       660
     caggaaaatt ataacctacc gcataattac gtcaagtcac tgcgtttcat tcatcggtgg       720
     ttatagtttc ggaaattaac ccttgcagta ccagtgttgg ttggttcaga caacca           776
//
ID   BEL-229_AA-I repbase;    DNA;    INV; 5951 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-229_AA_;
KW   BEL-229_AA-LTR; BEL-229_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5951
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 913-913 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4992-5549] - Integrase core
CC   'GAGTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..5951
FT                 /product="BEL-229_AA-I_1p"
FT                 /translation="MASGDTSLGGLKTGRDCGGCDQPNDADSQMVQCDACQ
FT                 VWYHLKCAGETPGVENRPFKCRTCQPPVRKQTRKQPRSQKSTSENRLKVPV
FT                 VTTTDEHTETTPKKNPEVLPSKDNAGFPSKAISTKTVSSACRSRAVLQKQI
FT                 EAEQRLAELKLAEAEKRLEEDRLMQERERALRDEKIKLQEDLLRKMQELEG
FT                 TVDDEKRSGYSSSSGISKTRNWLAKQREQDIISEHIGNSSHRSPKMSDHIS
FT                 RQSGDDNNEDQMLPELADREAYGAIDQQGSGGMHRRMSSIRPLEERPLEGV
FT                 SNVNRIATREIRSSTQSMTGGPTANQIAARQIWPKKLPIFSGEPEEWPIFY
FT                 SSYDGANAACGFSDVENIIRLRECLRGPAREAVISKLMFPKSVPSIIETLR
FT                 RLYGRPELMVKSLLAKVRRLEAPKPERLDTLINFGMTVQQLSDHLIAADLQ
FT                 SHLANPTLMEELVDKLPAAYKLEWVRFKRVFETPTLKEFAGFMDLLVADAS
FT                 EVTVLSQSRTEKNRHEKEKHGHKGHVYAHNDDDVDKIPSPREPCPICGETN
FT                 HRVRNCEKFQRMNVEFRITATKKYKLCAVCLFNHESKCRSRIRCNIENCQE
FT                 RHHPLLHRPGRRSAVASRVIDAECNTHGPRTRAVLFKVVPVTLHNEGRSFD
FT                 TFAFVDEGSSRTLIDSSLARLLKLKGETVPLKLIWTSNVTRTERSSKLVDV
FT                 MISARGQDQTFSLNGAHTVNGLNLPKQTLLLDGLADRYDHLRDLPTISYVD
FT                 AEPKILIGLRNLELFSPLETRVGQPGEPVAVRSVLGWAIYGPCGIDNQRSD
FT                 FVGLHDCNCKPDEDLNELIRQQFVLEEAVVCVAPLPESVDDKRARQLLEET
FT                 TRRLGDRYETGLLWKSDEIRFPNNWNMAMKRLKGLEVKLSRDPVLRTNVHQ
FT                 QIREYVDKQYAHIATEQELASADPNRVWYLPINVVTHPRKPGKKRLVWDAA
FT                 AQVDGMSLNSQLLKGPDLLNSLPSVISVFRERPIAFGGDVREMFHQVRIIP
FT                 KDKHSQRFVFRFDPSDPPDIYIMDVATFGASCSPCSVQHVMRKNALEHAAD
FT                 FPDAAAAIIERTYMDDYVDSTDTVEEAATRAKQVREIHAHAGFEMRNWVSN
FT                 SEDVLRALGEIKEQKPVPIGDVTQENWERVLGLTWDPQGDFFSFSTTFHGD
FT                 LEPYVSGNRRPTKRIVARSIMSVFDPTGMLAPFSIHGKMLIQDLWRSGTQW
FT                 DQDIPDEEYAKWMRWTHLLPGIGRLKIPRYYFGTLSPNRFKSLQLHVFTDA
FT                 SEFAMGCAAYFRAADDQGVHCALIMSKSKVAPLQHQSIPRLELQAAVMGAR
FT                 MLKCAMENHNLPISRSFLWTDSTTVLSWIRSDNRKYKQYVAHRIGQILSHT
FT                 QLNDWRWVPTKENVADFLTKWGKHTEPVSSSSWFNGPAFLYETEEKWPQQR
FT                 QVASNIQEELRPCYSLHHIVIPQDLIKVENISKWSVLLRTMILVGRFINNC
FT                 RLRINGQPIETIVATDNQLKHLKRSVPAMIVPFRRAEFEQAELNLWRLAQA
FT                 ESYPDEVRVLLKNRDASPDALTSVERSSPLYKLSPFADEFGVVRVEGRTAD
FT                 AGYAPFDARFPIILSKDHPITFRLINHYHNQYGHANKETIVNEVRQRFFVP
FT                 SLRSVVDKVARACQRCKVRKCKPQYPRMAPLPEQRLTPYIRPFCYVGVDYL
FT                 GPLEVAVGRRKEKRYVVVFTCLVVRAVHLEIAYDLSTDSCVMAIRRFVRKR
FT                 GSPEQIFSDNGTNFVGANRELTQQIKLINDNCANTFTDAKTKWSFNPPAGP
FT                 HMGGVWERMVRSVKESMRALDDGRKLNDEILLTVLAETEWFINSRPLTYMP
FT                 QEAGNDEALTPNHFIFGNSSGSHEPLRSSTDLGEALRSSYQRSQYLSDALW
FT                 KRWIKEYFPTVNRRSKWFNDVRPIKVGDLVYVADGDRRTWIRGKVEEVITG
FT                 RDGRIRQAIVQTVNGNGKLKRPVVKLAVIEIGDCESGKFPERPHLDPRGGG
FT                 "
XX
SQ   Sequence 5951 BP; 1722 A; 1375 C; 1529 G; 1323 T; 2 other;
     ttcttaaagg ataccactca gctcagatgg cttcaggcga cacttcactt ggagggctca        60
     agacgggccg cgattgcgga ggctgtgacc aacctaacga cgcagactca cagatggtcc       120
     aatgcgatgc gtgtcaagta tggtaccatt tgaagtgtgc cggagaaact ccgggcgttg       180
     aaaacagacc gttcaaatgt cgaacgtgcc aaccaccagt caggaagcag acgagaaaac       240
     aaccccggtc gcagaagagc actagtgaaa atcggctgaa agtacccgtg gttacgacta       300
     cagatgaaca cactgaaaca acaccaaaga agaatccgga agtgctgccg agcaaggata       360
     atgcgggttt tccgagcaag gcgatttcta cgaaaaccgt ttcatcagca tgtcgttctc       420
     gcgccgtttt gcagaaacag atagaggcag agcaacgttt ggcggaattg aagctagccg       480
     aagctgagaa gcgtctagaa gaagatcgat taatgcagga acgagaacgc gctcttcgcg       540
     acgagaaaat aaaattgcaa gaagatctgt tgcgtaaaat gcaggagcta gaaggaacag       600
     tcgatgacga aaaacgctct ggatattcta gttcaagtgg gatcagcaag acaagaaatt       660
     ggttggcaaa acaacgggag caggacatta tttccgaaca tatagggaac agctctcatc       720
     gttctcccaa aatgtcagac cacatctctc gtcagtcagg tgacgacaac aatgaggatc       780
     agatgctacc cgaattagca gaccgtgagg catacggtgc tatagatcaa caaggttcag       840
     gggggatgca cagaaggatg tcatcaatca gacctttgga ggagcgtcct ctagaaggag       900
     tgtcaaacgt aaatcgaatc gccacgcgsg agattcgatc atcaacgcaa tcgatgactg       960
     gaggaccaac cgcgaaccaa atagctgctc gacagatttg gccgaagaaa ttgcccattt      1020
     tttctggtga gcctgaagaa tggccaatat tctatagcag ctatgacgga gcgaatgcag      1080
     cctgcggttt ctcagatgtt gagaacatca tccgtcttcg agagtgtctt cgaggaccag      1140
     cgagagaagc ggtcatctcg aagctgatgt ttccaaaaag cgtgccatcg atcatcgaga      1200
     ctctacgaag attgtatggc cgcccagaat tgatggtcaa atcgttactg gcaaaagttc      1260
     gccggctgga ggcgccaaaa ccggagcgtt tagacacttt gataaatttc ggcatgacag      1320
     tgcaacaatt aagtgatcac ttaatagcag ctgacctcca gagtcacctg gctaacccaa      1380
     cgctaatgga agagctagtg gataagctgc ctgcggcgta taaattggaa tgggtacgat      1440
     ttaagcgggt attcgagaca ccgacgttga aggaattcgc tggattcatg gatcttctgg      1500
     tagctgacgc gagtgaagtt accgtgctat cacagtcgag gacagagaag aacaggcacg      1560
     aaaaggagaa gcacggtcat aaggggcacg tctatgctca caacgacgat gacgtagaca      1620
     agattccctc gccgagagaa ccgtgcccca tctgcggaga aacaaatcac agggtgcgta      1680
     attgtgaaaa gtttcaacga atgaatgtag aatttcgcat cactgccacg aagaaataca      1740
     aactttgtgc agtatgtcta ttcaatcacg aatccaagtg ccggtctaga atccgttgca      1800
     acatagaaaa ttgtcaggag cgacatcacc cgctgcttca tcgccctgga cgaagaagtg      1860
     ctgtagcctc gagagtcatc gacgcggagt gtaacactca cggtccgaga acaagagcag      1920
     tattgttcaa agtggtacct gttacacttc acaatgaagg acgcagcttc gatacctttg      1980
     cctttgttga tgaagggtca tcaaggactc tgatagactc aagcttagca cggcttctta      2040
     aactaaaagg tgaaacagta ccactgaagc tgatttggac atcgaacgtt acgcgaacgg      2100
     aaagatcatc aaaactggta gatgtcatga tctcagcgcg aggtcaggac caaacattca      2160
     gtctcaatgg agctcacacg gtaaacgggc tgaatctacc caaacaaact ctgttgctcg      2220
     acggtttggc tgatcggtat gaccatctgc gcgatctccc caccatctcg tatgtcgacg      2280
     cagaacctaa aatcttgata ggtttgcgaa acttggaatt gttctctcca ctcgaaaccc      2340
     gggtagggca gcctggtgag cctgtagcgg taagaagtgt gcttggctgg gcaatatacg      2400
     gtccatgtgg aattgacaac cagaggagtg acttcgtagg ccttcacgac tgcaactgca      2460
     aacctgacga agatttgaat gaactaattc ggcaacagtt cgttctcgag gaggcggtgg      2520
     tttgcgtcgc gccgttaccc gaatctgttg acgacaaacg cgcacggcaa cttctagagg      2580
     aaacaactcg gcgcttgggt gatagatacg aaacggggct tctttggaaa agtgatgaaa      2640
     ttcgttttcc aaataattgg aacatggcaa tgaagcggtt aaaaggtctt gaggtgaagt      2700
     taagccggga tccagtacta cgcacaaacg tacatcaaca gattcgggaa tatgttgata      2760
     aacagtacgc tcacatagcc acggaacaag agctggctag tgctgaccca aatcgggtat      2820
     ggtacctgcc tatcaacgta gtaacacatc ctcggaagcc agggaagaag agactagtgt      2880
     gggacgcggc ggcacaagtt gatggcatgt cgctaaactc tcagcttcta aagggtcctg      2940
     atttgctgaa ctcacttcct tccgttatta gcgtcttcag agaacggccg attgcctttg      3000
     gaggcgacgt tagggaaatg tttcatcagg ttcgaataat cccgaaggac aaacattccc      3060
     agcgcttcgt cttcagattc gaccccagtg accccccgga catttatata atggacgtag      3120
     cgacctttgg ggcgagctgc tcgccctgtt ctgttcaaca tgttatgcgc aaaaatgctc      3180
     ttgaacacgc agcagacttt cctgacgcag ctgctgcgat aatcgagagg acttacatgg      3240
     atgattacgt tgatagtacc gacacggtag aagaagcagc aacgagggcg aaacaggtac      3300
     gagaaataca cgcacatgcc gggtttgaga tgaggaactg ggttagcaac agtgaagacg      3360
     tcttacgtgc gctgggtgaa attaaggagc aaaagccggt gccgattgga gacgttacac      3420
     aggagaactg ggagcgtgtt ctggggttga cctgggatcc gcaaggagat ttcttctctt      3480
     tctcaactac cttccatggg gacctagaac catacgtctc tggaaaccgt cgtcccacaa      3540
     aacgtattgt cgcccgaagc ataatgagtg tgttcgatcc aaccggcatg cttgcaccgt      3600
     tttcgataca cgggaaaatg ttaatacaag atctgtggag atctggcacc caatgggatc      3660
     aagacattcc ggatgaagaa tacgcaaaat ggatgcgttg gacacatctt cttccgggga      3720
     ttggacgcct gaaaattcct cgatattact ttggaactct aagtccaaac cgattcaagt      3780
     cgctgcaact gcatgtattc accgatgcca gtgagttcgc catgggatgt gcagcatatt      3840
     tccgggcagc cgatgaccaa ggtgtacatt gtgccttaat aatgtctaag agcaaagttg      3900
     ctcctctgca acaccagtct ataccaagat tggagttgca ggcagcagtt atgggggcaa      3960
     gaatgttgaa atgtgccatg gaaaaccata accttccaat cagtcgcagc ttcttgtgga      4020
     cagattccac cacagtgctg tcgtggatcc gatcggataa ccgcaaatat aagcaatatg      4080
     ttgctcatcg aatcgggcaa atcttgtcgc acacacagct gaacgactgg cgttgggtgc      4140
     ccaccaaaga aaacgttgct gattttctga cgaaatgggg aaagcacacc gaaccggtct      4200
     catctagttc gtggttcaat ggaccagcct ttttgtatga aacagaagag aaatggcctc      4260
     agcagcgaca agtggcgtcg aatatccagg aagaactacg gccatgctat tcactacacc      4320
     atatcgtgat tccacaggac ctaataaaag tggaaaacat ttctaaatgg agtgtgctgc      4380
     tacgaacaat gatcttagtg ggtcggttta tcaacaactg tcgtctgaga atcaacggac      4440
     agccgataga gaccatcgta gcgactgata accagctcaa gcatttgaaa cgttcggtac      4500
     cagctatgat tgtaccgttt cgccgwgcag agtttgagca agcggaattg aacctttggc      4560
     gacttgcaca ggcagaaagt tacccagacg aggtaagagt gctgctaaag aatcgcgatg      4620
     cgtcaccgga tgcattgacg agtgttgaac gttcaagccc tttatacaag ttatcccctt      4680
     tcgctgacga atttggcgtg gttcgagtag aaggcagaac cgccgatgca gggtacgctc      4740
     ctttcgacgc aagatttccc ataatcctct cgaaagacca tccaataacg ttccgtctaa      4800
     taaatcatta ccataaccaa tacggacacg caaataagga aacaatcgtg aacgaagtcc      4860
     gccaacggtt cttcgtccca agtcttcgat cagtcgtaga taaggtagcg agagcatgtc      4920
     agcgatgcaa agtaagaaaa tgcaaacctc agtatccacg gatggcccct ctacctgaac      4980
     aacgattaac cccatacata agaccatttt gttatgttgg agtcgactat ctaggtccct      5040
     tggaagttgc cgttggccga cgcaaggaga agcggtatgt ggtagtcttc acttgcctgg      5100
     tggtcagagc cgtccacctt gagatagcct acgatttatc tactgactcg tgcgttatgg      5160
     ctatacgacg ttttgttcgc aagagaggtt cacctgaaca aatattttct gataatggca      5220
     caaactttgt aggtgccaac cgtgagttga cgcaacaaat taagctgatc aacgacaatt      5280
     gcgcgaacac attcacggat gccaagacta agtggtcctt caatccaccc gccggtcctc      5340
     atatgggtgg cgtgtgggag cgtatggtac gcagtgtgaa agaatccatg agagccctcg      5400
     acgacggccg caaactcaac gatgaaatcc tgttaactgt gctggccgaa acagagtggt      5460
     tcatcaactc ccgcccactc acatacatgc ctcaggaggc aggtaacgat gaggccctca      5520
     cgcctaatca ttttatattt gggaattcat ctggttcaca cgaaccgctt aggagctcca      5580
     ccgaccttgg agaagcattg cgtagcagtt accaacgaag ccagtatttg tcagatgctc      5640
     tatggaaacg ttggataaaa gaatacttcc ctacagtcaa ccgtagatca aaatggttca      5700
     acgacgtacg ccctatcaag gttggagatc tggtatacgt agcagatggc gaccggagga      5760
     catggatacg agggaaggtt gaagaggtca ttacgggacg agacgggaga atacggcagg      5820
     ccatcgtaca aacggtcaac ggaaacggca agttaaaacg accagtggtc aaacttgcgg      5880
     tcatcgagat tggagattgt gaatccggga agttcccaga gaggccacat ctggatccac      5940
     ggggcggggg a                                                           5951
//
ID   BEL-229_AA-LTR repbase;    DNA;    INV; 558 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-229_AA_;
KW   BEL-229_AA-I; BEL-229_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-558
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 914-914 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 558 BP; 169 A; 92 C; 114 G; 183 T; 0 other;
     tgttccggca gcactgctcc catgaaaggc agtgaactcg ccggcgattg tagtccgttt        60
     gtcaatgcga cggtgacata gctgatagag agattagaca acgtgttaac aagattgttg       120
     aaagtgaatt tataatttct tggatttcat atgaattgtt ttaaaagcta gatctaaaag       180
     taagttgggc cgaaatttga aggattgaat tatgtctcta atatacatca tatgaactag       240
     atttctcttt gccctagatt attactagtt tagtgtgtcc gggtagaact gaagtcatcc       300
     tgattgataa gtgttcaata acgggtaaac ttaatctaaa ttcatttaat cgattgccta       360
     atttttactg ttgccttttg caagatagaa cttcttcgaa ccgtattgtt caggaccagc       420
     gtttcgacgt aaaacgttag gagaagacta tcgtaagtgg atgtaaccta taattcaata       480
     atttgcctaa taaactatat attatagctt taagcttcgc tggacaaaag ctgtaaaggt       540
     tcttctggcg tccgaaca                                                     558
//
ID   BEL-22_AA-I repbase;    DNA;    INV; 6173 BP.
XX
AC   supercont1.310;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AA_;
KW   BEL-22_AA-LTR; BEL-22_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6173
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.310; Positions  129287  123115.
XX
CC   Positions [5235-5783] - Integrase core
CC   'ACTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(21..1793,1797..6173)
FT                 /product="BEL-22_AA-I_1p"
FT                 /translation="MDDSPNGTPDPNYTVSCVACDRPPTADNFVCCDRCAD
FT                 WWHMSCAGVTDSIENKDWLCSKCLPAPSISITSTSSTRRARLQLELQRLTE
FT                 QRELEKLALNVELEKRFLERKYAMLEKSLQDEEVDHRSNRSRSSKTDAEKR
FT                 KKDILDWVEQQSNEGVGKHPGRSPSVKSVVSNIEKRNQKPSYAMINQEDGA
FT                 VGGEVPIGNRLVPPPILIPPGSGKLTAQYQSKEDVNLLQLHKDRASSYTLD
FT                 EITALQDHLAKCKLQLLESTTQTQRKLDASDVSKGVLPKAYSNQRHHPKKD
FT                 SFLETRSSKLPEIHRVDAFEEPEALQNAVRLFPDSRALMKKRNVPIGQQLN
FT                 RSHEQQQKYEPEPRPLSPLQRVRKEASHQMHDVGRTNERIFATVNEGNQPF
FT                 HKHRFEERVPAMLQPSDENIIEPVSNFIPPINQTIFGPTNQQLAARQALPR
FT                 DLPTFSGNPADWPVFISQYEYTTDACGYSDGENMIRLQRCLKGPAWESVRS
FT                 RLMLPASVPLVVQALRMRYGRSELLIDSLIARVRSAPTPKVDRLETLIEFG
FT                 TMVQALCDHIIAAHLNDHLANPTLLKDLVEKLPAEYRMRWAGYRHHLVVNL
FT                 KTFSDFMEEIVNDAYSVSSVTNTFERPIKTDRTKQKDRIFVHSESKKPDCS
FT                 ICNRDGHRVKDCKTFLALPIDDRWKKVQSLQLCRICLTNHGRRACRITKRC
FT                 ETDGCGFRHNPLLHSPKQNTRPPTDAHVSCHFNRGTLPSLFFRIIPITLRN
FT                 GTKTIDTFAFLDEGSSVTMIESSLAKELNISGYTKPLCLKWTGDMCREERD
FT                 SRLISVLISGVDSSKQYRMNDVQTTQTLGLPSQSLPIEELVRIYRHLGGIP
FT                 IRGYRNAIPKLLIGVDNLRLSLPLKSREGVNGAPVAVKTRLGWCVYGGRRR
FT                 IEQAEFSYHICECGGEEGFGSAMRKYFSFEEAGVMPRTTIMSDEDKRAQCI
FT                 LEETTKRVGGRFECGLLWKYDNVELPDSYPMAVKRLHCLERRMAKDPILKQ
FT                 NISQQIDEYQLKGYARRVPLNQLTDLDPRRTWYLPLGAVTNPNKPGKVRLI
FT                 WDASAKVDGICLNSLLLKGPDLVTPLCFVMFRFRQHSVAISADLKEMFHQV
FT                 RIREDRPAQSFLFRSDPENEPQIFHMNVATFGATCSPAIAQHVKNANAKEF
FT                 EEKHPRAVEGIVFNHYVDDYLDSFATEEEAKQVTTEVREIHRCGGFELRNW
FT                 CSNKDEVLQHLGQMVQNPVKQLRFDDQEQSERVLGMRWATDTDEFCFSAKM
FT                 RNETAAIISGDQKPTKRQILKCIMSLFDPLGLLAPYLVFGKILMQNVWRQG
FT                 IGWDEVVDDRLFEQWQHWTKMIDHINYIRIPRSYFRKAGAKGFQNIQLHTF
FT                 VDAGGDACACVSYFRIVNEEGTVEIALVSAKTKVVPLKPITIPRLELQACV
FT                 LGTRLAKYIVEGHSIIIKKRIFWSDSSSALSWINGDPRKYSPYVSFRVAEI
FT                 LESTDRAEWRWVASEDNPADEATKWGAGPCFKSNSIWYTGPEFLYLPECEW
FT                 PRPTPFVTSEEELRACYLHRELHIPQCIVDVSRFSKWTHLQRVMAYVHRFI
FT                 NNCRYKCRHSGPLMRSELQKSENSIFRMVQWQSFPEEMVTLSTNHFLPLNE
FT                 QRPLEKTSKIYKMTPLLDENQILRVDGRISSAQCASADVKFPIILPRTHRL
FT                 TVLLIDDLHRQLKHGNKETLVNEIRQKYCIPKLRALVNSVVFRCLHCKIRN
FT                 ARPIVPQMASLPKARLSPFVRPFSFVGLDYFGPFLVKVGRSQVKRWIALFT
FT                 CMTIRAVHLEVAQSMSTESCVACVRRFVCRRGFPVEIHSDNGTNFQGAERL
FT                 LREQINTELASTFTSTTTAWHFIPPATPHMGGAWERLVRSVKTALTAAYNN
FT                 EKLDDEALYTMIIEAESIVNSRPLAYLPLDSAEQEAITPNHFLLGSSTGVK
FT                 QPAVQQGSDCVIMKRSWTMIQKYLDMFWKRWVLEYMPTLTKRTKWFGETRN
FT                 VREGDLVIIVDETKRNGWTRGRVLQAITASDGRVRQAVVQTSKGVLRRSVA
FT                 RMAVLDVAREDGTKEDEGSHRGGG"
XX
SQ   Sequence 6173 BP; 1821 A; 1368 C; 1490 G; 1494 T; 0 other;
     attcttcaaa aattcaagag atggatgatt cgccaaacgg tactccagat cccaactata        60
     cggtaagctg tgtcgcttgc gatcgtccac ccaccgcgga caattttgtc tgctgtgacc       120
     gttgtgcgga ttggtggcat atgtcctgcg ctggtgtgac tgactcgatt gagaataagg       180
     attggttgtg cagtaaatgt ctaccagctc catcgatctc catcacatcg acatcttcaa       240
     ctcgtcgagc cagactacag cttgagcttc agcggctaac agaacagcgc gaactcgaaa       300
     aattggctct aaacgtagaa ctggagaaaa ggttcttaga acgaaaatat gcgatgttgg       360
     aaaaatcact tcaggacgaa gaagttgatc accgtagtaa tcgtagccgc agtagtaaaa       420
     cggatgctga aaaacggaaa aaagatatcc tggattgggt ggaacaacaa tcgaatgaag       480
     gagtcggaaa gcaccctggc cggagtcctt ccgtgaagtc tgtagtttct aacattgaga       540
     aaaggaacca gaaaccgtcc tacgcgatga tcaaccaaga agacggtgct gtaggaggtg       600
     aagttcccat aggcaatcga ttagttccac caccaatttt gataccacca ggatcaggaa       660
     aactaacagc acaatatcaa agtaaagaag atgtcaacct gttgcagttg cataaggacc       720
     gagcttcaag ctacacgcta gatgagatca cagcactgca ggaccatttg gcgaaatgca       780
     agctgcaatt gttagagtct acaacgcaaa cacaacgtaa actggatgcc tctgatgtct       840
     caaaaggagt cttacctaaa gcctattcga accagcgaca tcatcccaaa aaggattcgt       900
     ttctcgaaac tagatcgagt aaactgccgg aaatacaccg tgtcgacgcg tttgaagaac       960
     cagaagcact ccaaaatgcc gttaggctgt ttccggattc ccgcgcgctt atgaagaagc      1020
     gaaatgtccc aattggacaa cagttgaatc gttcacatga gcagcagcag aagtatgaac      1080
     cggaaccaag accgctgagc cctcttcagc gtgtccgaaa ggaagcaagc catcagatgc      1140
     acgatgtggg acgtacaaat gagcggatct ttgcaactgt caacgaaggc aatcaaccat      1200
     ttcataagca ccgctttgaa gagagagtac cagcgatgct tcagccgagc gacgaaaata      1260
     tcatcgagcc ggtgtcaaac ttcattccac ccataaatca aactatcttt ggacccacta      1320
     atcagcagct agcagcaagg caagctttac cgcgagatct gcctacattc tcagggaatc      1380
     cagccgattg gcccgtcttt ataagccagt acgaatacac aaccgatgct tgcgggtaca      1440
     gtgacgggga aaatatgatc cgattacagc gttgcctcaa gggacctgct tgggaatctg      1500
     ttcgtagccg gttgatgttg ccggcttcag ttccgcttgt agtccaggcg ttaagaatgc      1560
     ggtacggtcg ttctgaactt ttaatagatt cgttgattgc gagggtgaga tcggctccaa      1620
     caccaaaagt ggatcgacta gaaactctga tcgagttcgg taccatggta caagcccttt      1680
     gtgatcacat tatcgctgcg cacctgaatg accatttagc aaatccaact ttgctgaagg      1740
     acttagtgga aaagcttcca gctgagtaca ggatgagatg ggctggatat cgttaacatc      1800
     acttggtggt aaatctcaaa acattcagtg acttcatgga agagattgtg aacgatgcgt      1860
     atagtgtatc aagtgtaaca aatacatttg aaagacccat caaaactgat cgcacaaagc      1920
     agaaagatcg gatatttgtt cactctgaat cgaaaaaacc ggattgttca atttgcaaca      1980
     gagacggaca ccgcgtgaag gattgtaaga ctttccttgc actaccgatc gacgatcgct      2040
     ggaagaaggt gcagagtctt caactgtgtc gtatctgctt gactaaccat ggacgcaggg      2100
     cttgtcgtat cactaaacgg tgtgaaaccg atggatgtgg atttcgccac aatccactgc      2160
     tacattcgcc taaacagaac actaggcctc ctacagatgc ccacgtgtcg tgtcacttca      2220
     acagagggac tcttccttct ttatttttcc gaatcattcc gatcacctta cggaacggta      2280
     cgaaaacaat cgatacgttc gctttcttgg acgaaggatc gtctgttacg atgattgaaa      2340
     gcagtctagc taaggaactg aacatttctg gatacacgaa accactgtgc ctgaagtgga      2400
     caggcgatat gtgcagagag gaacgagatt cacgactcat atcagtgctt atctcaggcg      2460
     tagatagttc aaaacaatat cgtatgaatg atgtgcagac tactcagacg ttaggtctgc      2520
     ctagccaaag tcttccaatc gaagaattgg tcagaatata taggcacctt ggtggaattc      2580
     ccattcgagg atatcgtaac gcaatcccga aattgctcat tggcgttgac aacctgcgat      2640
     tatcactacc cttgaagtct cgcgaaggtg taaatggcgc accagttgct gttaaaacac      2700
     gcctaggctg gtgtgtatat ggaggtcgtc ggcgtataga acaagcagaa tttagctacc      2760
     acatctgtga atgtggtgga gaagaaggct ttggatcggc catgaggaaa tacttttcat      2820
     tcgaggaagc aggtgtaatg ccacgaacaa caataatgtc ggacgaagat aagcgagcac      2880
     agtgtatact ggaagaaaca actaaaagag tgggaggccg gttcgagtgt gggttactgt      2940
     ggaagtacga caatgtggag cttccagata gttacccgat ggccgtcaaa cgattacatt      3000
     gcttggagcg cagaatggcc aaagatccaa ttctgaaaca gaacatttcc caacaaatcg      3060
     acgaatatca gcttaaaggt tatgctcgtc gagtgccgct taaccaatta acagatttgg      3120
     atcctcgtcg tacctggtac cttcctttag gggccgttac aaacccaaac aaaccgggga      3180
     aggtgcgatt aatttgggat gcatccgcaa aagtagatgg catctgcctg aattcactgt      3240
     tactcaaagg gcccgatcta gtaactcctc tgtgtttcgt tatgttccga ttccgacagc      3300
     attcggtggc gattagcgcg gacttgaagg agatgttcca tcaagtccgt ataagagaag      3360
     atcgtccagc tcaaagtttt ctattccgct cggatcccga gaatgaacca cagatattcc      3420
     atatgaatgt cgctacattt ggagcaacct gttcaccagc catcgcacaa catgttaaga      3480
     acgcaaacgc gaaggaattc gaggaaaaac acccacgagc cgtagaaggg atagtgttca      3540
     accactatgt tgacgactat ctcgacagtt ttgccactga agaggaagcg aaacaagtta      3600
     caacggaagt cagagagatt cacagatgcg gtggatttga acttcgcaac tggtgttcaa      3660
     ataaagatga agtccttcaa catctaggac aaatggttca aaacccagta aagcagctgc      3720
     gtttcgacga tcaagaacaa tcagaacgag tcctgggaat gcgttgggca acggacacag      3780
     acgaattttg cttctccgcc aagatgcgaa acgaaactgc tgccataata tcaggcgacc      3840
     aaaaacctac gaaacgtcag atactcaaat gcataatgtc cttgtttgac ccccttggat      3900
     tacttgcgcc gtatttagtg tttggcaaga tccttatgca gaacgtgtgg agacaaggta      3960
     tcggctggga tgaggtagtg gatgatagac tctttgagca gtggcagcat tggaccaaga      4020
     tgatcgatca catcaactac attcgtattc cgaggagtta ttttcgaaaa gcaggagcaa      4080
     aggggttcca aaacattcag ctacatacct ttgtcgatgc tggtggagat gcttgcgctt      4140
     gcgtttccta tttccgtata gtcaacgaag aaggtactgt agaaatcgca ttagtgtctg      4200
     ctaaaactaa ggttgtccca ctgaaaccta ttacgattcc tcgtttagag ctccaagctt      4260
     gtgtgctagg aacacgactt gcaaaataca ttgtcgaagg acactcaatc atcatcaaaa      4320
     agcgtatctt ctggagcgac tctagttccg ctctgagttg gatcaatgga gatccgcgaa      4380
     agtacagtcc gtacgtatca tttcgagtag ccgagatttt ggaatcaacc gatcgagctg      4440
     agtggcggtg ggtagcatct gaagataacc cggctgacga ggctaccaaa tggggagctg      4500
     gaccatgttt caagtcgaac agtatttggt atacaggacc agaatttctc tatctacctg      4560
     agtgcgagtg gccgagaccg actccctttg taaccagcga ggaggagctg cgagcatgtt      4620
     atctacatcg agaactacat attcctcaat gtattgtaga cgtcagtagg ttctcaaagt      4680
     ggacccattt gcagcgtgta atggcgtacg ttcacaggtt tatcaacaac tgccgttaca      4740
     aatgccgaca ttccggtcca ttgatgagat ctgaactaca aaagagtgaa aattcaattt      4800
     tccggatggt tcaatggcag tcttttcctg aagaaatggt aacactatct acgaaccatt      4860
     tccttccact aaatgaacaa cgccctttag agaagacgag taaaatctat aagatgacac      4920
     cactgttgga tgaaaatcag atcctccgcg tagatggaag aatcagctca gctcaatgtg      4980
     catcagccga cgttaaattt cccataattc tcccacgaac acatcgatta acagtacttt      5040
     tgatcgatga tctgcatcgt caactcaaac atggaaataa ggagactttg gtcaatgaaa      5100
     tcaggcagaa gtattgtata cctaaactac gagcgttggt caattccgta gttttccgtt      5160
     gcctacactg taaaattcgg aatgctcgac caatcgttcc acaaatggca tcattgccta      5220
     aagcaagact atcaccattc gtacggccgt tcagctttgt gggacttgat tattttggac      5280
     cgtttctggt gaaagtagga cgtagtcagg ttaaaagatg gattgccctt ttcacttgta      5340
     tgaccatccg cgcggtccat cttgaagttg cccaaagtat gtcgacggag tcttgtgtag      5400
     cttgcgtccg tcgatttgtg tgccgcagag gttttccagt ggaaattcac agtgataatg      5460
     gcactaattt tcaaggcgcc gagcgcttgt tgagagaaca aatcaacacc gaacttgctt      5520
     caacttttac aagtacaacg acggcctggc acttcattcc ccctgccaca ccgcatatgg      5580
     gcggagcttg ggaaaggctt gttaggtcgg taaaaacggc acttactgcg gcgtataata      5640
     atgaaaagct ggacgatgag gctctctata cgatgattat cgaagcggag tcgatagtaa      5700
     acagtagacc gttggcatac cttccgctgg actcggcaga acaagaagcg atcactccta      5760
     accacttctt gttagggagt tctaccggag ttaagcagcc agctgtgcaa caaggaagtg      5820
     actgtgtaat catgaagcga tcttggacta tgattcaaaa atatttggac atgttttgga      5880
     agcgttgggt gctcgagtat atgccaacgt tgacgaagag gaccaaatgg tttggagaaa      5940
     ctagaaacgt acgagaaggg gatctagtca tcattgtcga cgaaactaaa aggaatggct      6000
     ggacacgtgg tcgagtgcta caagcaataa cagcttctga tggcagggta cgtcaagcgg      6060
     ttgtgcaaac ctccaaaggt gtactacgac gatccgtcgc aagaatggcg gtccttgatg      6120
     tggccagaga agatggaacc aaggaagatg aagggtccca tcggggggga gga             6173
//
ID   BEL-22_AA-LTR repbase;    DNA;    INV; 609 BP.
XX
AC   supercont1.310;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AA_;
KW   BEL-22_AA-I; BEL-22_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-609
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.310; Positions  123114  122506.
XX
SQ   Sequence 609 BP; 190 A; 90 C; 123 G; 206 T; 0 other;
     tgttgccaca tcactcggag agatggcatc cctgccatcg aatgcagtag tgtgtgacta        60
     aaggatttga ctgatgtcaa aatagattac ttgcaatttt gaagtgcttt gcgacagaag       120
     ttaacccatt gaatttattg gatttatgta gaatttatta ttatttcaat ttccctttat       180
     taccgaatta ctagaagtaa ggctacgtta gtgctatcaa aggtatgcag cataagtctg       240
     tgggttatgg tatattagag ctgatttcat ttgcaggaac taaatactcg ctgagcgtat       300
     tgaatttgtg gatcgcggta gatacgggat tattattggc aggtgaaata tatccaaatt       360
     gtaattaaat gtataccaaa tatgtataac tagaatgtcg ctttacacag aatttagttg       420
     cgaacgggct attgaacaac agtaacgcaa gatcatgcat gtatggtctc actgaattgt       480
     aggttaaact actatggatt aaaattacca tgaactaatt tgttaatctt ttttctagtt       540
     tgaagcataa aataaacggc tatcaatatc agtggaagat acagttcgtt tttgttctcg       600
     tttgcaaca                                                               609
//
ID   BEL-22_AG-I repbase;    DNA;    INV; 5438 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AG_;
KW   BEL-22_AG-LTR; BEL-22_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5438
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1448-1448 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [4677-5063] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..2542
FT                 /product="BEL-22_AG-I_2p"
FT                 /translation="MATSKGHSDESDEELRGFADEDLETAINTVLVKEASL
FT                 LQHHSTESDKKMVRGASGEGPKTGAFVEPNAVLEVKKAERDGIIRCLKRQE
FT                 VFLQSYAQSDAMYVPTRLKRVRSCWEQFQEVTREIRSIEGIVQANEELVDE
FT                 IDEQCMLLIGQFEEKLKRPESDSAVAVRVLDEQKVRLPPLALPEFSGNYDE
FT                 WLPFYSLYKTAVHENNSLTDTEKIMYLKRALKEEAFRVVDAFPTCGSAYEA
FT                 AWKALEKRYANEYLLKKRYVNELLNMPKMKTRKTKDIHSVVDSFERNAKLL
FT                 DQLGEKTSGWGMLLTQLLLSKLDDETQRNWERQLESDSECSVQSLFDFLRA
FT                 ETRVLDAMAVDQHSLGVTKKSDRRFVNLALKGETKCAQCSKQHSIVVCRSF
FT                 GELTIDDRLKVAMQKRLCLNCLSPGHFASKCFSKGRCGTCKKRHHSLLHKE
FT                 DMPAIEQVQQVSGEEEEQEVSAGASSMLAALPALKSSTHGQVMLSTAIVRI
FT                 QGKGGKWFSVRALLDNGSQINIMTADLCRRLCLPKVRGSVTVTGIGKIGVQ
FT                 NTQMAKALVSSEGRTFMEQVDFVVLEHITENQPCGDMRFDVKRLPGNMVLA
FT                 DPNFYKKGPIDLLLGAEYFVDILQHECKIVPASSDHPGFVKTVFGWVASGR
FT                 TSFPKNQQAACHLVTAEPSSENLTECLERFWTIEELPDKPRFSQQEKDCEE
FT                 SFAQFHHRDDEGRYVVNLPFKIGEREPLGESKQCATKRFLQLERRLKRDPS
FT                 LGRDYAAVIADYINQGFLKKVAIDETGDDRQQGFYLPHHPVIKRASTTTKV
FT                 GQFSMVRQNIEWCFA"
XX
SQ   Sequence 5438 BP; 1429 A; 1077 C; 1549 G; 1377 T; 6 other;
     tatggtgctt cgtgacacag gattgtgatt gtgatcgttt agcgtggttt tsgwttwgtt        60
     gtttggagtt tttttgcgtt agtgaagtga watggcaacg tctaaaggcc actcggacga       120
     gtcggatgag gagttgcgtg gtttcgcaga tgaagatctg gaaaccgcaa ttaatacagt       180
     gttggtgaaa gaagcatcct tacttcaaca ccactctacg gagtcggata agaagatggt       240
     caggggagcc tcgggggagg gccctaagac aggagcattc gttgagccca acgcggtgtt       300
     agaagtgaaa aaagctgaac gtgatggcat aatccggtgt ttgaagcgtc aggaagtgtt       360
     tttgcaaagt tacgcacaaa gtgacgcaat gtatgttcca acaaggttga aacgtgttcg       420
     ttcgtgttgg gaacaattcc aagaagtaac ccgtgaaatt cgttcgatcg agggaatagt       480
     ccaagcaaac gaagagctgg tggacgaaat cgacgaacag tgcatgttgt tgatcgggca       540
     attcgaggaa aagttgaagc gtccagaaag tgacagtgca gtggcagtac gtgttttgga       600
     cgaacaaaag gttcggctac cgcctcttgc gctgcccgaa ttttcgggaa attatgatga       660
     atggttgcct ttttacagtt tgtacaaaac ggcagtccat gaaaacaata gtttgacgga       720
     tacagaaaag ataatgtatc tgaagcgtgc gttgaaggag gaggcgttcc gggtagtgga       780
     cgcttttcct acgtgtggtt cggcgtatga agccgcttgg aaggctctgg aaaaaagata       840
     tgccaacgaa tatcttttga aaaagcggta cgtaaacgaa ctgttgaata tgccgaaaat       900
     gaaaacgcgc aaaacaaaag acatccacag cgttgtggat agtttcgagc gaaatgcaaa       960
     gcttttggac cagcttggtg aaaaaaccag tggttggggt atgcttttga ctcagcttct      1020
     tttgtcaaaa ttggatgatg aaactcagcg gaattgggaa cggcagttag agagtgatag      1080
     cgagtgttcg gtgcaaagtt tgttcgattt tcttcgagca gaaacgcgtg ttctggatgc      1140
     catggcggtt gaccaacaca gtttgggtgt tacgaagaaa tctgatcgtc gctttgttaa      1200
     tcttgctctc aaaggagaaa cgaaatgtgc gcagtgtagc aaacagcata gcattgtggt      1260
     gtgcaggtcg tttggagagt taacaatcga tgacaggttg aaggtggcta tgcagaaaag      1320
     gctttgttta aattgtttgt cgccaggcca ttttgcgagc aagtgttttt ctaaaggtcg      1380
     atgcggcacg tgtaaaaaac gccatcattc tttgcttcac aaagaagaca tgcctgcaat      1440
     cgaacaagtg caacaagtgt caggtgaaga agaagagcaa gaagtgtccg cgggggctag      1500
     cagtatgtta gccgcgctac ctgcgctgaa atcgtctacg catgggcaag tgatgttatc      1560
     aaccgcgatt gttcgtattc aaggaaaagg tggaaaatgg ttttccgtta gagccctttt      1620
     ggacaatggt tcgcagatca acatcatgac agcagatctt tgtcgacgtt tgtgtttgcc      1680
     caaagtgcgc ggttcggtaa cagttactgg tataggaaag atcggtgtgc aaaataccca      1740
     aatggcaaag gcgttagtat catcggaagg aaggacgttc atggaacaag ttgattttgt      1800
     agtgctcgaa catattacgg aaaatcagcc ttgtggtgat atgcgtttcg atgtgaaaag      1860
     gttgccgggt aacatggtgt tagcagatcc taatttttat aagaagggac cgatcgatct      1920
     gttattgggt gcggagtatt ttgtggacat tcttcagcac gagtgtaaaa ttgttccagc      1980
     aagtagtgat cacccgggtt tcgtgaagac tgtgtttggt tgggttgcgt ctggcagaac      2040
     aagttttccg aagaaccagc aagccgcatg tcaccttgtc accgctgagc cgtcgtcgga      2100
     aaatttgacg gaatgtttgg agcgtttttg gaccattgag gagctaccag acaaacctcg      2160
     attttcgcaa caggagaagg attgtgagga gagttttgca caatttcatc atcgtgacga      2220
     cgaaggcagg tatgtagtta atctgccttt taagattggc gagcgtgagc cattaggcga      2280
     gtcgaagcag tgtgcgacca aaaggtttct gcagttggag cggcgtttga aaagggatcc      2340
     gtcgttggga cgagattatg cagcagtgat tgccgactac ataaatcaag gttttttgaa      2400
     gaaagtagct atcgacgaaa ccggtgatga ccgtcagcag ggtttctatc ttcctcatca      2460
     cccggttatc aaaagagcta gcaccaccac gaaggtaggc cagttttcga tggtccgcca      2520
     aaacatcgaa tggtgtttcg cttaatgagc cttactgaaa gggccgtcat tcaggattct      2580
     tgttggacat attgctacga tttcgatgaa gcatgcattg gcggcggata tgagacaaat      2640
     gtatctgcag gtaaaagtag atccgaagca tacgcgttac cagcgtatat tatggcgcga      2700
     ggatccagca ttgccgatag aagtatatga gctacagcgt gttacttttg gtctgactcc      2760
     atcgtcattc ttagcaacca gggttttaaa gcagctggcg attgacgaag gggacgccta      2820
     ccctagagct cagcaagcgt tgctacaaga tttttatgtg gacgatttct tgggaggagc      2880
     agacaatgaa gaagaagcgc ggcagctggt tgatgaattg ttaaaactca tggcgaaagg      2940
     aggattccat tgcaaaaatg gagttcaatt catctgctgt tctggcacaa gtggcatctg      3000
     atgattggtc acgtgcaaat gtagtgaatc tgagctctga ggagcckgta aaaaccttgg      3060
     gaatagcctg gcaaccccaa gatgacgaat tgtttgttga ggccagcatt cctgtatctg      3120
     atgagccatg gacccggcga cgcgtatact ccatggtggc tagattgttc gaccctcttg      3180
     gccttctagc gccagttacc gcatgggcga agatccagat gcaggctttg tggatagcta      3240
     ccgacgattg ggacgaacca ataccgacgc aaatggaact cctgtggaac cagttccagg      3300
     atcagctacc ccgtttgaag gaaatcaaat ttgcgcggca tgtggttatc agcaatccgg      3360
     tgagtgtcca atttcattgt ttttccgatg cttcagaggc ggcgtatggt gcctgtgttt      3420
     accttcgatc aatggacggc gatggtaacg tcaaagtgga gctagtagca gcgaaatcca      3480
     ggccagcccc tttgaagaaa attagttttg ccagactaga gctgtgtgga gcagtattag      3540
     ctacgaactt gagaaagtgt gtcggcagag cgctcaagat ggaggaggct gaaaccttca      3600
     tgtggacgga ttccacagtt ggttttgcat ggctgcgatc accttcttac acgtgggcta      3660
     ctttgtggca aaccgcgtct cggcggtaca ggaaaacgga aagggctatc atggctacac      3720
     gtcagaggca ggagaatccg gcggacatcg tttctcgggg gcgcttccga gtgaagtgat      3780
     agcatcagtt cgtggttcca cggcccttct tggttgatat cttcagagga caagtggaga      3840
     aagtcgatgc cgttggatcc ccctgacgaa ggcgaccttg aaaggaagcg aaaggtcttg      3900
     gtagcagtta gcagcgaaag gactgaggaa tgggctgaga ggttttcgca gttttggaga      3960
     tgcctcaaag tgacagccta ctgcctcaga tttgtaaaag gatgcagaaa gtccggcgaa      4020
     gtgtatccaa gtaagtgtct aactatgttt gaaatcgttg cagctaagat ggctttagtg      4080
     aagatgcttc aacaagaaca cttcgtagcg gagataaagg agctagcgag tgggcgtgtc      4140
     attccaccga gctctaaatt gaagaaattg ggagcatttc tggataaaga aggattgttg      4200
     cgggttggtg gacgtttgtc acaactagca attccttatg cggagaagca tcctctgatt      4260
     ctgcctggca gcgcacatct gacgaagtta ctggcacgtg tgtaccacct tcgagctatg      4320
     catggtggtc cgagagcaac gttggcagct atgagacggg aattttggcc aatcaacggg      4380
     aggagcgtgg tgaacggcgt ttgcagaagc tgtgttattt gtttcagagc ggcacccacg      4440
     acagtggcac aaccttcagg acaactaccg gaaccgcgcg ctactccttc tcgaccgttt      4500
     tcggtggttg gcatggacta ctgtggacca ttctatttga gaccggtgca tcggcgggcg      4560
     gcggcgcaaa agagctacat ggcagtcttc gtttgctttt cggtgaaagc aatacatctg      4620
     gagttggtgg aggacttatc gacggcagcg tttatggcag cgtttcgtcg gttcgtttcc      4680
     cgkcgggtct tccatccaag gtctactcgg ataatgggct caactttcgt ggcgccagca      4740
     gtgagctgaa ggagttgtat gaactcctga acgaaccaga gaatcaacag cgtatccaga      4800
     atgcagctct ccaagatggc atcgagtggc acttcatccc gccacatgct ccgaacttcg      4860
     gtggtttgtg ggaggcggcc gtaaagtctg ctaagcggat cctgcggaaa gtgctgggca      4920
     accagagact ttcttttcct gagatggcaa cggtattaac gcagatcgag gcgcagctga      4980
     acagtcgtcc tttgacgcca ctatccgaag acccgtcgga aatggatgtc cttacgccag      5040
     ggcatttctt gattggggca cccctgacgg cgctacccga gaaggatgtc tccaatcaac      5100
     ctgaaaatcg tctgcgtcgt tatgaactgc ttcagcgatt ggtccagctg cactggaagc      5160
     gatggcagcg agaatattta agtgaactac ataattatgg gcaacgtgta tcgcctgtta      5220
     aaagagttga agagggacag gtagttcttt tgaaggagga taatgtgcca gtttgcgaat      5280
     ggccaatggg aaggatcgag aagacttttg tagggccaga tcgggttgta cgagtagtta      5340
     aagtgcgtac gcagaaaggc agttatacca gaccaacttc aaagatttgt attttgccaa      5400
     ttgaggggta aatttatcct aaatttagag gggcgcca                              5438
//
ID   BEL-22_AG-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AG_;
KW   BEL-22_AG-I; BEL-22_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-321
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1432-1432 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 321 BP; 98 A; 64 C; 61 G; 98 T; 0 other;
     tgtttggatt tgaatttatc gtacattttg tttaggagaa tttgctgctt gggtcatatt        60
     tgacagctca gtgagggata cagttccgat ccgcacggaa tgatcgattc cgttgtgacg       120
     ctcatcacta tcaatttttt gtaaggagaa gacagacgct tcgtgaactc gagacaagaa       180
     agtcgtactt gtgcgcaaca cttaaacacc acggattttg ttcagccctt ttttcattaa       240
     cttcactaaa actttgtaac tttgtaacac aacgtaggac taaaataaaa actagcaaac       300
     gtaatcaaac ccgtctaaac a                                                 321
//
ID   BEL-22_AnFu-I repbase;    DNA;    INV; 5821 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5821
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 673-673 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..5700
FT                 /product="BEL-22_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSEEAKIDCAASDRENAVNVQGESDERTATAVAAKGR
FT                 RPKSERIMAAKAGQRREAAARTEIGRREYKPPIINDDPCSSRAPGKADFAK
FT                 HERSSTSSKHSALERLVREQDLQVKLLLAEKEKLMAEAEIKCKLAALELQH
FT                 ETQRNDLEEGSNFSGSSISGTSKAAEWVRRQSELFEPQACSSDKPVQLEYK
FT                 GSEVPREDKAADLEWRPNANHIAARQVWPKKLPTFSGKPREWPKFYCYFVE
FT                 STKACKLSPAENVARLEECLKGPARDAVEGWLDNPSSVPLVIKTLQRLYGR
FT                 PSLVVKDLMEKVRGTPAPKPEQLSELITFGLAVQHLCAHLSNENLTHYLSN
FT                 QELLEEMVEKLPATRKLEWVRYSRKYPLPTMKEFGEFMDTLVDEACVVTKY
FT                 IPPKPTTDRTVHRSNVHSVSSPSTTPEGSTLSSRETQTPNITMQSTPCHQC
FT                 KSTDHKVRQCEAFKRMTPIERLEAATRMKICMNCLADHGTKPCRSRYSCGV
FT                 PGCGERHHSLLHQKKEGATVKSAQCQTHQHVAKTTLFRVVPVTLYNGERRV
FT                 DTHAFLDEGSSLTLVEASLAASLGVEGQSEPLELNWTANVKRKEDSSRRIS
FT                 LEISARGEERRYLVAAAHTVDQLSLPKQKIKFPTLISTYDYLQDLPCEREE
FT                 EVAPRILIGLENVDLMTPLETRSGQPGQPIAVKTVLGWAIYGPHETNVSRR
FT                 QPVMNNVHNATQLPTNEESDVTLNDMLRRYFTLEEAVVTNLSAYLPEPRDV
FT                 VRAKQLLESTTEKQKDRFVTGLLWKSDNVTLPASLAMATKRLYALERKLEK
FT                 DQQLKKTVHDQMRMYIERGYAHRATEEELATANPKRIWYLPLNVVGHPHKP
FT                 DKKRLVWDAAAKVQGVSLNSSLLKGPDLLAMLPGVLCSFRQRKIAFGGDIE
FT                 KMFHQIRIRREDTHSQRFLFRFDKNKEPDVYLMDVATFGATCSPCSAQYIM
FT                 HRNADEHAKMYPASAIAIKRSTYMDDYFDSCDTIEEAIVRVKEVKFIHSQA
FT                 GFNMRNWVSNDPLVPKSVEEPDSKPNPVAIKLTETDSHARVLGMVWDPVAD
FT                 VFRFSSCWHTDLIPYVVEGKRPTKRIALRVIMSLFDPLGLLAPILIHGRML
FT                 MQDLWRVGLDWDAEMSDIDFEKWQRWVSLLSAIHCLEIPRCYFSDTSSALS
FT                 TMQLHVFTDASEIGYGCVGYLRSEEQGRIHCSLVMARSKVAPVKYQSVPRM
FT                 ELQAALLGARLMKTIVENHTLPIGEKYIHTDSEVVLAWIRSPSRDFKQFVA
FT                 CRIGEILSLTEPAMWRHVPTKENPADCLTKWGKDTKLETSCRWFNGPSFLY
FT                 LPQTNWPKQKNIQHTTEERRTTNLLIHHQQSEQPIIDVQRFSKWRRLLRTV
FT                 ALLYRFASNCQRKGKDLPIETLPATKGQMRHLTRKIAAKHVPLTTTEYVKA
FT                 ERVMWRIIQQQYYPNEIRILNGDNKGEPLSKKSTLHPLSPIADEFGVLRMD
FT                 GRTANADYATFDARFPIILPRQHRITSLLIDDYHLKLGHANSETVVNEVRQ
FT                 RFYISNLRVLVDRVAKDCQRCKVKKSKPYYPKMSALPVERLTARVHPFSYV
FT                 GVDYLGPVDVTNGRRNEKRYVAVFTCLVTRALHLEMVHSLSTDSCIMAIRR
FT                 FVSRRGSPVEIFSDNGTNFVGACNILKGEISATRYRCADTFTNACTSWSFN
FT                 PPSAPHMGGVWERMVRSVKEAIGALNDGRRLNDELLLTVLADSENLINSRP
FT                 LVYTSLSANAESLTPNHFLLGSSAGTKAHLRLCPDLAETLRSNYKRSQQLT
FT                 HALWDRWIKEYFPGLNRRPKWRDDNIQLKVGDLVFVIEGQRKEWARAVVEE
FT                 VHTGRDGRVRQAVVRTALGKRLKRPTVKLAVLDVEVRSDNM"
XX
SQ   Sequence 5821 BP; 1751 A; 1347 C; 1477 G; 1246 T; 0 other;
     agctttaact tactcgaaca gtgaaattta tcggacgttt gtgcgaaaag taaagactat        60
     cggataacct tgtttgtgag acaaactttt tgagtgagat agtgcagtga aatgtccgaa       120
     gaagcgaaga tcgactgtgc agcgagcgat cgcgaaaatg cagtaaacgt tcaaggtgaa       180
     tcagacgaga gaaccgcaac cgcggtagca gcgaaaggtc gtcgccctaa gagtgagagg       240
     ataatggcgg ctaaggctgg ccaacgccgc gaagctgcgg ctaggacaga aatcggcaga       300
     cgcgaatata aacctcccat cataaacgac gatccatgct catcccgcgc tcccggcaag       360
     gctgattttg ccaaacacga acgatcttcc acgtcttcga agcattcggc gttagaacgt       420
     cttgtgagag agcaagacct gcaggtcaaa ctgttattgg ccgaaaaaga aaaattgatg       480
     gcagaagccg aaataaaatg caagttggcc gcattagagc ttcagcacga aacgcagagg       540
     aatgatctcg aagaggggag taattttagt ggttccagca taagtggcac ttctaaagca       600
     gcggagtggg tgcggcgcca atcggagctt ttcgaaccgc aagcctgttc tagcgataag       660
     ccggttcaac tagaatacaa aggttccgaa gtaccgcgcg aggacaaggc agctgattta       720
     gaatggaggc ctaacgccaa ccacattgca gctagacagg tatggccgaa gaaattaccc       780
     accttttcag ggaagccgcg tgagtggcca aaattctact gctattttgt agaatcaaca       840
     aaggcatgca aactctctcc agcggaaaat gtagctaggt tggaggagtg tcttaaagga       900
     ccagcacgag acgctgtcga agggtggctg gacaatccat catcagtgcc attggtgata       960
     aagacgctac aaaggcttta cggacgtcct tcactcgtgg taaaggattt aatggagaaa      1020
     gtacgaggta caccagcacc taaaccggag caattgagcg agctcataac ctttggcctg      1080
     gcagtgcaac atttatgtgc ccacctatcc aacgaaaacc ttacccacta cctttcgaac      1140
     caagaactgc tagaggagat ggtagaaaag ttgcctgcaa cgagaaaact agaatgggtt      1200
     cgatacagtc gaaaatatcc actaccaact atgaaagaat ttggtgaatt catggacacg      1260
     ctagtggacg aagcatgtgt agtgaccaaa tacatccccc cgaaacctac aacagaccga      1320
     actgttcacc gctcgaacgt ccatagtgta tcttcgccaa gcacgacacc tgaaggatct      1380
     accctatcat ctcgggaaac acagacacct aacatcacga tgcagtcaac accgtgccat      1440
     caatgtaaaa gtacggacca caaagtgaga caatgcgagg cgtttaagcg catgactcct      1500
     atcgaacgtc ttgaagctgc gacacggatg aaaatttgca tgaattgtct ggctgatcac      1560
     ggaacaaaac cgtgcagatc gagatactcc tgtggcgtcc cgggttgcgg tgaaagacat      1620
     cacagtttgt tacaccagaa gaaggaagga gcaaccgtca aatcagcgca gtgtcagacg      1680
     catcaacacg tggcgaaaac aacactattt cgtgtagtgc ctgtaacctt atacaacgga      1740
     gaaaggcgag tcgacacgca cgcgttcttg gacgaagggt cgtcgttaac gttggtggaa      1800
     gcgtcattgg cggcgagtct tggagttgaa gggcaatcgg aaccactgga gttgaattgg      1860
     actgcaaatg tgaagcggaa ggaagattct tcacgacgaa tcagtttgga gatttcggca      1920
     cgtggcgaag agcggcgcta cttagtggcg gccgctcata cggttgatca gctaagtcta      1980
     ccaaaacaaa aaattaaatt tcccacactg ataagtactt atgactactt gcaggatcta      2040
     ccatgcgaac gagaggagga agtggctcca agaatcttaa tcggcctgga aaacgtagac      2100
     ctgatgacac cattggaaac ccgatcaggc cagccggggc agccgattgc cgtaaaaaca      2160
     gtgctaggtt gggcgattta cgggcctcac gaaacaaatg tatcaaggcg acaaccggtg      2220
     atgaacaacg tccacaacgc gacgcagctg ccaaccaacg aagaaagcga cgtaacactc      2280
     aatgatatgc ttcgtcgcta cttcacctta gaggaagcag ttgtaaccaa cctcagtgcg      2340
     tatttaccag aaccgagaga cgtagtacga gcaaaacagc tactcgaaag tacaactgaa      2400
     aaacaaaaag atcgtttcgt aaccggattg ctgtggaaat cggacaacgt aaccctgccg      2460
     gctagtctag cgatggcgac aaagaggttg tacgcactag agcgaaagct ggaaaaggac      2520
     caacaactaa agaaaaccgt acacgaccaa atgcggatgt acatcgagcg aggctacgca      2580
     catcgagcaa cagaagagga gctagcgaca gcaaatccta aacgcatctg gtaccttcct      2640
     ctcaacgttg ttgggcaccc tcataagcca gataaaaaac gcctcgtttg ggacgcggcc      2700
     gcaaaagtcc agggtgtgtc actgaattcg tcccttttga aaggtccaga tctgctagcg      2760
     atgcttcccg gagtattgtg cagctttagg cagaggaaaa ttgcattcgg aggggacatt      2820
     gagaagatgt tccaccagat tagaattcgg cgcgaagata cccacagtca gcgatttttg      2880
     tttcgttttg acaaaaataa agaacccgat gtatatttaa tggacgtcgc tacattcggt      2940
     gcaacgtgtt ctccatgttc tgctcaatac attatgcacc gtaacgccga cgaacatgca      3000
     aaaatgtacc cagcatctgc aattgccata aaacgctcga cttacatgga tgattacttc      3060
     gatagctgcg atacgataga agaagccatc gtacgggtaa aagaggtgaa attcattcac      3120
     tcgcaagcag ggttcaacat gcgcaactgg gtaagcaacg acccacttgt acctaagagc      3180
     gtggaggaac ctgactcgaa accaaacccg gtcgccatta agctcacaga aaccgacagt      3240
     catgctagag tgctgggaat ggtatgggat cccgtcgccg acgtgtttcg attttcctca      3300
     tgttggcaca ccgacctaat accttatgta gtcgagggaa aacgtcctac aaagagaatc      3360
     gcactaaggg ttataatgag tcttttcgat cccttgggac tactcgcacc gattctgatc      3420
     catggacgca tgttaatgca agacctgtgg cgcgttggtt tagactggga tgcagaaatg      3480
     agcgacatcg acttcgaaaa gtggcaacga tgggtgagcc tactgtcggc aattcactgt      3540
     ttagaaatcc ctaggtgtta ttttagcgat accagttcag ccctcagcac catgcaacta      3600
     catgtgttca cggatgcgag tgaaataggg tatgggtgtg tcggctatct gcgctccgaa      3660
     gaacaagggc gtatccattg ttctttagtc atggcacgaa gcaaggtggc tcctgtaaaa      3720
     tatcaatctg tgcccagaat ggaattgcaa gcagcacttt taggagcgag actaatgaaa      3780
     acaattgtgg aaaaccatac cctcccgatt ggcgaaaagt atatccatac ggactcggaa      3840
     gtggtgttgg cttggattag atctccctca agagatttca aacaattcgt ggcgtgtcga      3900
     attggcgaaa tactttcact gactgaacct gcaatgtgga gacatgtgcc aacgaaggag      3960
     aacccagccg actgtctgac gaaatggggg aaagatacga aactggagac aagttgtaga      4020
     tggtttaacg gtccttcatt cctttacctc ccacaaacta attggccgaa acaaaagaac      4080
     atacaacaca ctacagaaga gcgaagaaca acaaacctgt taattcacca ccaacaaagc      4140
     gaacagccca ttatagacgt acagcgattt tcgaagtgga gaagattgct acggactgtg      4200
     gcactactat atcggtttgc gtcgaactgt cagcgaaaag gaaaggacct tccaatcgaa      4260
     acgctaccag ctacgaaagg acaaatgcga cacctaacgc gaaaaatagc agcgaagcat      4320
     gttcctctca ccacgaccga atacgtaaaa gccgaaagag taatgtggcg cataatccaa      4380
     caacaatact acccaaatga aatccgaatc cttaatgggg acaacaaagg tgaaccctta      4440
     tcgaaaaaga gcactctgca cccattatca ccaattgcag acgaattcgg agtgttacgt      4500
     atggatggtc gaacagcaaa tgcggactac gcgacattcg acgcacgatt ccccatcatc      4560
     ttgcccaggc aacaccggat aaccagcctg ttgattgacg attaccacct gaagttgggt      4620
     catgcaaata gcgaaacagt ggtaaacgag gttcgtcagc ggttttatat aagcaacctc      4680
     cgagtgctgg ttgatagagt ggcgaaggac tgccaacgct gcaaggtaaa gaaaagtaag      4740
     ccgtactacc ccaaaatgtc agcccttcca gtggaacgac ttaccgcccg agtccatcct      4800
     ttcagctacg ttggagtcga ctatttgggg ccagtggatg ttactaacgg caggcgtaac      4860
     gagaagcgat atgttgccgt tttcacatgc cttgttacgc gagctttgca cctggaaatg      4920
     gtgcatagct tatcaacgga ctcctgcatt atggccatac ggagattcgt ctcacgcaga      4980
     ggttctccag tagagatttt ctccgataac ggcaccaact ttgttggcgc gtgtaacatt      5040
     ctaaaagggg aaatctcggc gacaaggtat cgatgcgcgg atacctttac caatgcgtgc      5100
     actagctggt cttttaatcc gccgtccgca ccgcacatgg gtggtgtctg ggagcggatg      5160
     gtgcgcagcg tgaaagaagc tatcggcgca ttgaatgatg ggcgtcggtt gaatgacgaa      5220
     ctgttattga cggtgttggc tgactcggag aacctgataa attcgagacc actggtgtac      5280
     acttcgctat ccgccaacgc agagtccctt accccaaatc attttctctt gggcagttcg      5340
     gctggtacca aagcacactt gcgtttgtgc cctgacttag ctgaaacact aagaagcaac      5400
     tacaaaagat cgcagcagtt aacgcatgct ttatgggatc gttggattaa ggagtatttc      5460
     cccggtctca accgacggcc aaagtggcgc gacgataaca tacagctgaa agtgggcgac      5520
     ttagtgttcg tcattgaggg acaacgaaag gagtgggcaa gagcagtggt tgaagaggtc      5580
     cacacaggac gagacggacg agttaggcag gcagttgtac gaaccgcgtt gggaaaacga      5640
     ttaaagcgac cgacagtaaa actagctgtt ctcgatgtgg aagttaggag cgataacatg      5700
     taagagtgag ttcactaata actagaccgg aaatatttaa cgttgacaga tcgcgaaacc      5760
     tcgtggagag tgagcaaatc cggttataca gtttgacaag tgaccggttc acggggtggg      5820
     g                                                                      5821
//
ID   BEL-22_AnFu-LTR repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-342
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 726-726 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 342 BP; 103 A; 63 C; 86 G; 90 T; 0 other;
     tgttgctacg gtttacgata taaacaaacg ataagtaagc tgtcagtcag cattgacagc        60
     actcttccga tcgcgtctgg ttgagaaacc caccgctaga ggtcaggaga gagtaggttc       120
     gggtctcggg gtcgaatgac ctctggttcg ggaaatggga gttttgggtt ttacgccatt       180
     gcatttgcca gggagtagca tcacgacagg cgaacaggaa acaagttaaa ggtgttcttt       240
     gaagtgaaaa taaaatcgaa aaattagaaa agtattaaga attttcttac ttcctgagct       300
     cctaataaac ttttcactag cgcgaaaatt cgggtgctaa ca                          342
//
ID   BEL-22_CQ-I repbase;    DNA;    INV; 2508 BP.
XX
AC   AAWU01010298;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_CQ_;
KW   BEL-22_CQ-LTR; BEL-22_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2508
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 197-197 (2011).
XX
DR   GenBank; AAWU01010298; Positions    1368    3875.
XX
CC   'GGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..2377
FT                 /product="BEL-22_CQ-I_1p"
FT                 /translation="MDPERLKSLTNKRSVILAKVKWELSVANAIKTRNPSL
FT                 GEVAERRDKLTDLARCFEGIQTEIEEATPNLEEVITVFNHRILFEEAYFQI
FT                 KDLYTEYLDQHVEEPEDRSENRQDNDLRDAIRALLESQQQMLLAQCQKPTP
FT                 QSLALAAGSQVSNSVPQNVVKLPQIDIPKFTGERKHWRSFKDLFECTIHNR
FT                 TDLRDSVKMQYLFSYLDGEAKGKVDSFSINEDNYREAWDALVTFYDKKKYT
FT                 VFALVREFVDQQQVTSSNGLKKLVATSDDVVRQLKALGREYESRDPWLIHL
FT                 LLEKLDRETRSLWAQRIINIENPTFAAFLEFLQQRCDALETCLAFSKKPAS
FT                 DSTKKGRHVLHTTAVASCAKCSESHPTYHCEQFKAMDVDGRRELVLSQKLC
FT                 FNCLKPSHTTSKCPSKSTCHKPDCNQRHHTMLCYQQQLQGYEPEETDHDLC
FT                 PQLPEEAEEVWSFSANAAQTKANKHGPSTAALLPTVVVNLQGKDGKLHQVR
FT                 CLVDSGSQASLITEACVKRIGMKRTKVSLEVSGVNGEIVGNTAGAVTLVMS
FT                 SRFNGEAKLTTQAYVLGRLTATLPNQRFSVADLPFLEGLELADPDFNSPSE
FT                 MDVILGTDVFLSILRAGQVHNQQGIPVAQRSIFGWMVAGKITNPCRISTHI
FT                 AVLNERTPTITTTHNNLDGSITKRPKKNGIDVTPYNVALLNLAVSSTDPQA
FT                 CIVLFATRLRLPGLLSVKVWARGEGTEYLYLRSDRRTRSVPVQTVQSPPCT
FT                 HSWTATQARSSSQGNWSWSRITAHHHQPGNWPGS"
XX
SQ   Sequence 2508 BP; 635 A; 667 C; 728 G; 478 T; 0 other;
     tttggtcctt cgcggcacgg atatggatcc agagcggttg aagtccctca ccaacaagcg        60
     aagcgtcatc ctcgcgaagg tgaagtggga gttgtccgtc gcgaatgcca tcaaaacccg       120
     caatccgtcc ctcggcgaag tggcggaacg gcgggacaag ttgaccgacc tcgctcggtg       180
     tttcgaaggc attcagaccg agatcgagga ggccacgccg aacctggagg aagtgatcac       240
     ggtgttcaac caccgaatcc tgttcgagga ggcgtacttc cagatcaagg acctttacac       300
     ggagtacttg gaccaacatg tggaagagcc agaagacaga tcggaaaacc ggcaggacaa       360
     cgatttgcgg gacgccatca gggcgctcct ggaatcgcag cagcagatgc ttctcgcgca       420
     gtgccagaaa ccaacaccgc aatcgttggc gctagcggcg gggagccagg tatcgaactc       480
     ggtaccccaa aacgtcgtca agcttccaca gatcgacatc ccaaagttca ccggggagcg       540
     caaacattgg cgctcattca aggacctctt cgagtgcaca atccacaacc ggaccgacct       600
     gcgggattcg gtcaagatgc agtacttgtt ttcatacctg gatggggagg cgaaggggaa       660
     ggttgactcg ttttcgatta acgaggacaa ctaccgcgag gcgtgggatg cactcgtgac       720
     gttttacgac aaaaagaaat acacggtgtt tgccctcgtt cgggagttcg ttgaccagca       780
     acaagtcacg agctcgaacg ggttgaagaa actcgtagca acatccgatg acgtcgttcg       840
     ccagctgaag gcactgggaa gggagtacga gtcacgggac ccgtggctca tccatttgct       900
     gcttgagaag ctggaccgag agacgcgctc actgtgggcg caaaggatca tcaacatcga       960
     gaacccaact tttgccgcgt ttttggagtt tttgcagcag cgatgcgatg ctttggagac      1020
     atgtttggcc tttagcaaga agccggcctc cgattcgacg aagaagggga ggcacgtttt      1080
     gcacacaacc gctgttgcga gctgtgcgaa gtgcagcgag agtcatccga cgtaccactg      1140
     cgagcagttc aaggccatgg acgtggacgg aaggcgggaa ctagttcttt ctcaaaagct      1200
     gtgcttcaac tgccttaagc cgtcccacac aacgagcaag tgcccttcga agtcaacgtg      1260
     ccacaaaccc gattgcaatc aacggcacca cacgatgctg tgctatcagc agcagcttca      1320
     aggctatgaa ccggaagaga cggaccacga cttatgtcca caacttccgg aggaggcgga      1380
     agaggtctgg tcgttctcag cgaacgcagc ccaaacgaag gcgaacaagc acggcccgtc      1440
     gacggcagca ctgttgccta cggtggtcgt gaacctgcag ggaaaggacg gcaagttgca      1500
     ccaggtgcga tgcctcgtcg acagtggatc acaagcatcc ttgatcacgg aggcatgcgt      1560
     caagcgcatt ggaatgaagc gcacgaaggt ctctctggaa gtatctggag taaacgggga      1620
     aattgtcggc aacacggccg gcgcagttac gctggtgatg tcttcgcgtt tcaacggaga      1680
     agccaagctc accacgcaag cctacgtgtt gggaaggctg acggcaaccc tgccgaacca      1740
     gcgcttcagc gtagcggatc tgcccttcct ggaggggctg gaactagcgg atccggactt      1800
     caacagtcca agcgagatgg atgtgattct cggaacagat gtcttcttgt ccatcctgcg      1860
     agcaggacag gtccacaatc aacaaggaat ccccgtagca cagcgttcta tcttcggttg      1920
     gatggtggcg ggtaagatca cgaatccgtg tcggataagt actcacatcg cggttctcaa      1980
     cgagaggact cccacaatca cgacgacaca taacaacctg gacggatcaa ttacgaagcg      2040
     accgaagaaa aacggaatcg acgtaacacc ttataatgtg gccctcttaa accttgcggt      2100
     ttcgtcaacg gatccacagg cgtgtatcgt tctttttgcg acaagactcc gcctcccggg      2160
     tctcctaagt gtgaaggtat gggcacgggg agagggcacc gaatacctat atttacgaag      2220
     cgaccgaaga acaagaagcg ttccggtgca gacggtgcaa tcgccaccat gtacccattc      2280
     ttggacggcg acgcaagcaa ggtcatcaag ccagggaaac tggtcctggt caagaataac      2340
     agcacaccac catcagcctg ggaactggcc cgggtcgtag cagttcatcc ggatcgagca      2400
     gggctggttc gggaagtgac gctgcgtcga ggaatgttcg agtacttgtg ctcggcacag      2460
     aagatctgtc cgcttccgaa ttgagacgct gtctcaaggc ggggagta                   2508
//
ID   BEL-22_CQ-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   AAWU01010298;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_CQ_;
KW   BEL-22_CQ-I; BEL-22_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-255
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 198-198 (2011).
XX
DR   GenBank; AAWU01010298; Positions    1113    1367.
XX
SQ   Sequence 255 BP; 62 A; 64 C; 67 G; 62 T; 0 other;
     tgtttgcgga atacctgcgg tcgacccctc ggtgcgcggc cggtctgtca acgcgagcgt        60
     cgttgcgtgc tttttgcgtt gaagtgggag aaaaacaaac aacaataaat atcagtccga       120
     agaagttttg aagagagcaa gacgtgtttc atttttcctc gcgcgcgatc cttaatccgc       180
     cggaaagccg tctctcacgt gtggccactt ggttccgacg aacaaagtag gccaattgta       240
     tacagtccgc taaca                                                        255
//
ID   BEL-22_DAn-I repbase;    DNA;    INV; 3685 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_DAn_;
KW   BEL-22_DAn-LTR; BEL-22_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3685
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 299-299 (2012).
XX
DR   [2] (Consensus)
XX
CC   'TTGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           914..2845
FT                 /product="BEL-22_DAn-I_1p"
FT                 /translation="MSTKEKIAIIEDQVRLTRQVDALLAKNSYLEEDRESL
FT                 KNIELRACTNHNHLVQLGAVEHEYFTKNHFDSMLSKFKSAKEKIKKIIGQD
FT                 ELFSRLEGAIKNLEDYLEQTYIEIQERKAETFPIRIKKLKMFLSRVETVSD
FT                 LINIEGLNNKYMPKIIELREDVEIHIELMNNKIEVSRLEKVEGSSPKMDEL
FT                 PTLPKIEVPSFFGNSKDWDHFYELFKELVHSRMDLSPSLKLSYLKSALKGE
FT                 ARNVVSHLLLGSGNNYDAAWELLIKRYENNRKIFSDQLNRLIELPKINLDS
FT                 YRHLKNTIDSINESIYMMRLKANLTEESDCIFAHIIIKKFNIEALQQYEGQ
FT                 VKKSNDIQNLKDVIEFLDQRLSSLTSVGNELPTRKIIQNNHTNNQACPMCK
FT                 MPGHQLIFCYKFKALSPQEKTNMVKKLNWCYRCLKHSSNSKCPSELVCSYC
FT                 QKLHHSMLHFKKENVNTCMTSEPALLATAYVQIKGQDGEFGKFRALIDNGS
FT                 QSTLISEEAAQKLKLPKIKAHTEISGVSATGACVSNHKLKLTIKNNSKYSK
FT                 EVSTNAIVLPKLMKSLPTNKIFINKSDWKGFYLADRNFDKPGRIDLVIGAD
FT                 LYPQILLPEITKKGMLLGQKTIFGWTVSGGRRPAGKRKIAIKTKII"
XX
SQ   Sequence 3685 BP; 1492 A; 598 C; 636 G; 959 T; 0 other;
     ttggagtaac accattattt aaggggctcc tcttaacatt tggtccatcg agacaccctg        60
     acgttttccc ccctgtggta agagactcag gtttaaaaaa ctggcaccta taagtggctg       120
     tagaaaaaat taaaattctc agcccagggt agctaaaaaa taaggctgcg atctgggtaa       180
     aaaagagctc agtttaaata tcgtagtcct ctgttgtttc cccccaagag gtaaggaaca       240
     cagagaataa aataatataa atgccaatga gcataattga atagaaagga aaaacaaaaa       300
     taaataaata tttttgtttc cttctatcgt gtttgttccg gaacgacacc ggaataataa       360
     aaaaatatat atattaaaat atatataaaa aataaaattt gtgtgttggc gtatccgagg       420
     ccctacatcg gaaaagttaa aaagtaattg tgatacttac ttgacaaaca aacttaaaaa       480
     aaaaaaaaaa aaaactacaa aaattaaatg gaaaaacatt taataaaaaa ataaacaaat       540
     tattaaatcg gaaaacatca aaaaaaaaaa aaaacatcag catagcatca gcatcagccg       600
     tgactagcag aagaaacatc agtcacagca gcagtgaaca ccccaagcag gagcacaaca       660
     tcaggagcaa tatcagccga agcaacagca ccagtgacgc agaagcaaca tccgcagcga       720
     caccaacatc aacagcaaca tcagccagca gcagtgacaa catcccaagg agaagcagca       780
     tcaacagcgc agcgacaaca aaatcaccaa accaacagca gaaattatag tcatcggcaa       840
     gtttggtctt ttagttttat aactttttag ttttataact taaatttaat ttaaaaaaaa       900
     aaaaaaattc aatatgtcga caaaagaaaa aatcgctatt atagaagacc aggtgcgtct       960
     cacccggcaa gtagatgcgc ttctcgcaaa aaattcttat ttagaagagg atagggagtc      1020
     acttaaaaac atcgagctta gagcctgtac gaaccataat catttggttc aacttggtgc      1080
     tgtagagcac gaatatttta ctaaaaatca tttcgatagc atgctatcaa aattcaagtc      1140
     cgccaaggaa aaaattaaaa aaattattgg ccaggatgag ctcttttcta ggcttgaggg      1200
     tgccataaag aatctcgagg attacctcga gcaaacttat atagaaatcc aggaaaggaa      1260
     agctgaaacc tttccgataa gaattaaaaa attaaaaatg tttctcagca gagtagaaac      1320
     agtgtccgat ttaataaata ttgaagggct taataataaa tatatgccca aaataataga      1380
     gctcagagaa gatgttgaaa tacacattga gctcatgaat aataaaatcg aagtaagtcg      1440
     attagaaaag gtagaaggta gtagccctaa aatggacgaa ctacctaccc taccaaaaat      1500
     tgaggttccc agtttctttg gaaactccaa agattgggac catttttatg agttattcaa      1560
     ggagcttgtg cattcaagaa tggatttaag cccatccttg aagctaagct accttaaaag      1620
     tgctctaaaa ggggaagcac gaaatgtggt ctcccattta ttgcttggct caggcaataa      1680
     ttatgatgca gcctgggagt tgctcataaa aaggtatgag aataatagaa aaatattttc      1740
     agaccaattg aatcgcctga ttgagcttcc aaaaataaat ttggactcat ataggcattt      1800
     aaaaaataca attgattcta taaatgaatc aatttatatg atgcgtctca aagcaaatct      1860
     gaccgaagaa tcagattgca tttttgcgca tattattata aagaaattta atattgaggc      1920
     tctgcaacaa tatgagggcc aagtaaaaaa gtcaaatgac attcaaaatt tgaaagatgt      1980
     catagaattt ttagatcaac ggcttagttc gttgacatca gttggaaatg agttaccaac      2040
     tagaaaaata atacaaaata atcacacaaa taaccaagca tgcccgatgt gcaaaatgcc      2100
     cgggcatcaa ttaatttttt gctataaatt taaagcatta agtcctcaag aaaaaacgaa      2160
     tatggttaaa aaattgaatt ggtgctacag atgtttaaag cacagttcaa actcaaaatg      2220
     tccaagcgag ctagtatgct cgtattgtca aaaattacac catagcatgt tgcattttaa      2280
     aaaagagaat gtaaatacat gcatgacctc tgaaccagcg ttgttggcca cggcgtatgt      2340
     tcagattaaa ggtcaagatg gtgaattcgg gaaatttaga gcattgattg acaatgggtc      2400
     acaaagcact ctaatttctg aagaagcggc acaaaaactt aagttgccaa aaataaaagc      2460
     gcacactgaa ataagtggag tatcagcaac aggtgcctgt gtttcaaatc acaaattaaa      2520
     attgacaatc aagaataatt ctaaatattc aaaagaagtg agcacaaacg caattgtttt      2580
     gccaaaatta atgaaaagtc ttcccacaaa taaaattttt ataaataagt cggattggaa      2640
     aggattctat ttagcggatc gcaatttcga caaacctggt cgaattgacc tggtaattgg      2700
     tgcggattta tatccacaaa ttttactgcc ggagataacc aaaaagggta tgcttcttgg      2760
     gcaaaaaact atctttggat ggacagtgtc aggaggtaga cgcccggccg ggaagaggaa      2820
     gatagcaata aaaacaaaaa taatttaaaa gagatgtgcc atccagcgag gtggcctcta      2880
     ggaaagtcaa gaagcattag cttcggctta tataggagaa ataaaagaga ttccgagaat      2940
     agcttgggac cctctaaagc ctcctgttat gaatcataca gcagaaatag ctcacctggc      3000
     caaacaaata gaagatttga aagcacaaaa tttagaattg aaaaatatcg actttcatca      3060
     tgtgtcaggt catagctcct taattttggt aatgataatc ataactgtac ttattatatc      3120
     ctatttaaga aaattaaagt cgagaagaca attgatggct atagcattgc caaccccaat      3180
     gccgaatgtt aaaaaaaaaa atgtttattt tatatgttta tgtataatgt aatggtttta      3240
     tacatataat taagtaatca atcaaataaa aaagaaaagc tacatatatc taaaaataat      3300
     aagaaacaaa ataagtaaaa attacagtcc actaaaaaat cgaataaata aagttttcaa      3360
     gatgtccact aaaaacaaaa aattaaaaaa aatatatatt acagtccact aaaaaatcga      3420
     acgaaaataa taattaattt aaaaatgtaa acacaagtca agcacttttg tggccccttg      3480
     caggatgttc aaacattaag ttgaacatgg gagctaataa aatgtaactt aaacaatgtt      3540
     aaaatattta aaaatatgaa atagaattat ataattaaca acatattgtt atcgaagaat      3600
     tataataata ataattttct aatattgaag aaaagaaatt taaaaatata taaaatgtac      3660
     accttttttg tggccctttg cagaa                                            3685
//
ID   BEL-22_DAn-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_DAn_;
KW   BEL-22_DAn-LTR; BEL-22_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-270
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 300-300 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 270 BP; 95 A; 40 C; 58 G; 77 T; 0 other;
     tgttcaagca ttgaacacga taagaattcc aaacatagaa tgtaggagat cggacccatg        60
     ggaataagtg attaacagca tggtttgaaa gacgatctcc tgcagtctaa ccaaatattt       120
     atgtggtgca cttgaagcac ttaagaaagg gtcacatagc atgtcagcgt gcagtccgtt       180
     gataagtagt tttaaataga tttaagattt tcatgtatct ttcttgtaag agaagtgtat       240
     gaaataaaaa cagttttgaa acggaactca                                        270
//
ID   BEL-22_DEl-I repbase;    DNA;    INV; 7676 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-11_DEl-LTR;
KW   BEL-22_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7676
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7089-7089 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. It seems this internal region use
CC   the same LTR regions as BEL-11_DEl-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           6001..7557
FT                 /product="BEL-22_DEl-I_3p"
FT                 /translation="MDAYFEMIRKGSALVNKMRLVCEKLHSFEDQCNLVLD
FT                 NTLKQLTELEENNKLFMAHSSQRKKRAPFEFMGSLYHILFGIMDEDDRIQM
FT                 EQNMRNLLDNQYSLDELGKKQLSIVDSTANVLKKTNEEVNSNFIYMNKRIE
FT                 NMXAILQESYYVYKESINFFMVTKQLTSLIEDCEKTQAGIISLLIDINHGR
FT                 LNTNILKPSQLKGEISKIKESLSEKLVLPGKRTGTELKEVYTLLTARGLFV
FT                 DKKLIINVKIPLFSRHPSKLYRVIPVPVWSEENLLIANLKSEYLVYNFEVD
FT                 SYHLMTETTLNKCQKWQAQRRVCEGNWPWSNANDLACELRPLKPGRPANCV
FT                 YKRILDSNSHWVELEAKSTWLFKVRMNTKIRIQCEHSKMELVNLPEEGILT
FT                 LRSDCTARTDDKILVAQYDIKTERQDVLSSAYIGDITDIPKIVWSPFESHS
FT                 TNHSAEIDRLSKELANLKETHIELKGLSVHHISGHTSLIICMLIVVILIIY
FT                 AIRKCSINRQLQAITFGGRLQDA"
FT   CDS           join(654..1385,1369..2115)
FT                 /product="BEL-22_DEl-I_1p"
FT                 /translation="MVSEQVLNLLKRQSEINKACREISDKGGRNFSSEEIE
FT                 IINELEREFITNHNCLIKLGTVDHEYFTKKRYDQVLSIFNQLKIDYEALKK
FT                 EAAIKKEHKHSLIEQKIKQLREYLKETFLEIQSEKKGTLRIRKNKINFLWQ
FT                 SISELKNKIGACSVEFDLTLSELEFDIQNISTEIDEQIKGKVASNLEVVSK
FT                 IENLPSLPKIEVPTFDGDTKEWDLFQELYVELIHTRKDLSTSLKFNYMKIS
FT                 LKRKSALKGEARKVVAHLLLGSAENYDAAWELPTKRYENNRKIFXEQLNRL
FT                 MELSILNIDSVRQIKNFIDTINEAIHILKLKANLSDEVDVIFAHMVLKKFN
FT                 TQTLQLYESHIKKTKDIQKLSDVMDFLEQRLCSTCSVQEEKPIRKSFGTHN
FT                 NYSFPRPNSFPNWSDRCPICKMMGHTVTQCHKFKGMNPAERLDNVKKVQLC
FT                 TRCLKHHNGQKCTIEYLCSLCNKTHHTMLHLNTQKRENQHCLQQQESK"
FT   CDS           join(2040..4451,4414..4632,4542..5582,5546..6019)
FT                 /product="BEL-22_DEl-I_2p"
FT                 /translation="NPSHNAALKYAKKGKPALLATARIKVKSANGDFESLR
FT                 ALIDSGSQSTIISEEAAQILKLPKIKSKTEISGISSEGTYVSKYKIKMLIK
FT                 SPHTKKPLTTEAIILPKLMKALPIREINVDKSKWQHFSLADPDFNKPGRVD
FT                 VIIGADLYTHILKKGMAKINGLLGQNTHFGWIVSGCTKSKGTHSIVATTIE
FT                 VQDLERFWELENEDKNDIETEICENNFIKTTTINSSGRYIVRIPFKDDTSL
FT                 GDSKPQAMARLINMEKKFQRNEKLRDSYKSFMKEYIDLGHMVESKKEGKYY
FT                 LPHQAVVRDSSLTTKLRVVFDASAKTTNNKSLNDIMWVGPRVQKEIFDIIL
FT                 NWRKWEYVISADIEKMYRQIFIDDKDQEYQYILWRDSPEDKIKSYKLKTVT
FT                 YGTASAPYLATRVLVDIADKCKNKEIGNIIRNDFYMDDLMTGADSVENAIN
FT                 IIEQISSEFNKVNLNLRKWISNKPEILKVVEDTGDNKLITIKENEFVKTLG
FT                 LQWEPQKDNFKFNVNLGISKKENKRTVLSTLSKIYDPLEWLAPVTITGKLF
FT                 VQKLWISENNWDQELSNDDAQEWSDYKEKLLLLEKIRIPRWIQSKLNSVIE
FT                 LHGFADASEKAYAAVVYAKVGRLVTIVASKSRVNPIKNRKTIPKLELCAAH
FT                 LLSKLINKIKESINNAAKIYAWSDSTIILAWIKGGQSKIKFIKHRTDEIRR
FT                 YTDVEWNHVKSEDNPADAASRGISSGELINFGLWWNGPNWLKESKENWPTK
FT                 SIAAEETSVHAVLTSEEDIIHNLLGKYSCMHKLTRIICYIVRFINKKGAEI
FT                 SIFGLLIKKEQKXQFSAELHSLYNNKEIKINXKILSLHPFLDEDKIIRVGG
FT                 RLQNSNAKFEVKHPIILEKGTFLHNYQGRREIAKFQCQIRSKTSDYSRKGH
FT                 ISALIIENAHNQTLHGGINLMRTYIQRKYWIFGLRNSLKKKLNECTKCARY
FT                 RQITAQQVMGNLPKYRVTMSYPFLNTGVDYAGPYYIRCSKNRGQKTYKGYI
FT                 AVFVCMATKAIHLEVVSDLTSDAFLAALKRFIARRGKCAAIYSDNGTNFVG
FT                 AARKLDEELAKAIKENSAVASQLGKEGIEWHFIPPAGPHFGGIWEAGVKSM
FT                 KYHLKRVIGDGSLTYEEMSTLLCQIEGVLNSRPLYLSDNDIEDNEVLTPGH
FT                 FLIGRPPLDAIEPINMNEKIGNLDRWKLIQKMKRDFWVKWKEDYLHTLQQR
FT                 YKWKKICPILKRDKMEKNMPNIEKGQVVLIKDECCHPSRWPLGKIEEVHKG
FT                 KDEKVRVVKVKMQDACISRPISKICPLLGIKAAENNEEVKPKRITRGGSRV
FT                 SKLGLIMSMLILMIFCQMSNAATSSENIPKYKVETINKTSAIYLDPMGEVE
FT                 IVSSSWNLVVFYKWMPILK"
XX
SQ   Sequence 7676 BP; 2911 A; 1182 C; 1521 G; 2057 T; 5 other;
     tttttggtcc ttcgagacac tctgcagttt tcccccatca gtggtaagag actcagagtt        60
     ataaaccagc tccttaaatt ctaaaggtag caaaataaaa tatctcttgt tgcccccacc       120
     cgtggtaagg aacagagaat aatacatctg aaagtttgga ataaagagca ccttagagtc       180
     ttgaaataaa gctaaaggtt gctatattac ccattttttt taatcgtggt aaggcgtgct       240
     tgaggccttt aacatcagct tatacggttc ttgtgaacgg agaactaagt gtgcgatacg       300
     taaaaaaacc agtgcattaa atgatcgtaa acacaagaac aaaaacaaac aaaaaattaa       360
     aaacccaaca aaattttttt ttggtgaact cgctaaaaat taaaagcacc agcaactaaa       420
     atcagcagag tctacagaat ctacagaggc gcaactacca acatcagcgt ctacaacaac       480
     atctacggca cagcaacagc atcgccagca gcagcatata cagcagcggc cacgacaaca       540
     gcagcaccta cagcaacgac aacagaagcg acgacatcaa cgaacagcac aacaagataa       600
     gatataagct aatatagtat ttttaaaaat tataagaaat atttgttgat ataatggtgt       660
     ccgagcaagt tttaaatctg cttaaaaggc agtcagaaat taacaaagcg tgtagggaaa       720
     ttagcgataa aggtggtaga aatttctcaa gcgaggagat cgaaatcata aacgagctag       780
     aaagggaatt tataaccaat cataattgtt tgattaagct tggtacagta gaccatgaat       840
     atttcacaaa aaagaggtat gaccaggtat tgtcgatctt taatcaatta aagatcgact       900
     atgaggctct taaaaaagag gcagccataa aaaaagagca taaacattcc ttaatagagc       960
     aaaaaattaa gcaacttagg gaatatttaa aagaaacatt cttagaaata caaagtgaga      1020
     aaaaaggaac tctgagaata cgaaaaaata agattaattt cctctggcaa agcatttcag      1080
     agcttaaaaa taaaattggg gcttgtagtg tagaatttga tttaaccctt agcgagttgg      1140
     aattcgatat tcaaaatatt tcaactgaaa tcgatgaaca aattaaggga aaagttgcaa      1200
     gtaatttgga ggtggttagt aaaatagaaa atttgccaag cctaccaaaa attgaggtgc      1260
     ccacatttga cggtgacacc aaagagtggg acctttttca agaattgtat gtggagttaa      1320
     tacatacaag gaaggatctt agtacctccc taaaatttaa ttatatgaaa atcagcctta      1380
     aaaggtgaag cgcgaaaagt tgtcgctcac ctattgttgg gttccgcaga aaattacgat      1440
     gccgcttggg aacttccaac caagcggtac gaaaacaatc gtaaaatttt ctsggagcag      1500
     cttaatcgcc tgatggagct ctcaatttta aatattgatt ctgtcaggca gataaaaaat      1560
     ttcatcgaca ccattaatga agcgatacac atcctaaaac ttaaggccaa tctgtccgac      1620
     gaagttgatg tgatatttgc tcatatggtg ctcaaaaaat ttaataccca aactcttcaa      1680
     ctgtatgaga gtcacattaa aaaaacaaaa gacatccaga aattatcgga tgttatggat      1740
     tttttggagc agcggctgtg ttcgacttgc tctgtacagg aagaaaagcc tatcagaaag      1800
     tctttcggta ctcataataa ttatagcttt cccaggccaa atagttttcc aaattggagt      1860
     gatcggtgcc caatctgcaa aatgatggga cacaccgtaa cccaatgtca caaatttaaa      1920
     gggatgaatc ccgcagagcg attggataac gtaaaaaagg tgcaattatg cacaagatgt      1980
     ttaaaacatc ataacgggca aaaatgtaca atcgaatatt tgtgttcgct ttgtaataaa      2040
     acccatcaca caatgctgca cttaaatacg caaaaaaggg aaaaccagca ttgcttgcaa      2100
     cagcaagaat caaagtaaaa tctgccaatg gcgattttga aagcttgaga gcgctgattg      2160
     atagtggatc ccaaagcact atcatatcag aagaggcagc gcaaattcta aagctgccaa      2220
     aaataaaatc taaaactgag ataagtggga tatcttcgga aggtacatat gtwtccaaat      2280
     ataaaataaa aatgttaata aaatcccctc atacgaaaaa gccattgacc accgaggcaa      2340
     taatattgcc aaaattaatg aaagctcttc ctattagaga aataaatgta gataaatcta      2400
     aatggcaaca tttttcattg gctgacccgg actttaataa gccaggccga gttgatgtaa      2460
     taattggagc agatttatat acacatatct taaagaaagg tatggcaaaa attaatggcc      2520
     tgttaggtca aaatacacat ttcgggtgga ttgtttctgg gtgtactaag tctaagggta      2580
     ctcattcaat agttgcaact actattgaag tacaagattt agaacgattc tgggaattgg      2640
     aaaatgagga taaaaatgat attgaaaccg aaatttgtga aaataatttt attaaaacca      2700
     ccacaattaa ttcaagtggg aggtatattg tcaggattcc atttaaggac gatacatcct      2760
     taggggactc caaaccacag gcaatggcac ggctaataaa tatggagaaa aaattccagc      2820
     ggaatgagaa acttagagat tcctataaat catttatgaa agaatatatt gatcttggac      2880
     atatggttga gtcgaagaag gagggaaaat attacctacc tcaccaagcc gtagttaggg      2940
     actcaagtct aactacaaaa ttaagagtag tgtttgacgc ttcggccaaa actactaaca      3000
     acaaaagtct taatgacata atgtgggttg gacctagagt ccaaaaagaa atttttgaca      3060
     taattttaaa ttggcgtaaa tgggaatacg ttatatctgc agacatagaa aaaatgtacc      3120
     gacagatatt tattgatgac aaagatcaag aatatcaata tatattatgg agagattctc      3180
     ctgaagataa gataaagtcc tataaattaa aaacagtaac ctatggtact gcctctgctc      3240
     catatttggc tactagagtt ctggtagata tagcagataa gtgtaaaaat aaagaaattg      3300
     gtaatataat tagaaatgac ttctacatgg atgatctcat gacaggagcc gattcagtgg      3360
     aaaacgccat taatattata gagcagattt ccagcgagtt taataaagtt aacctgaatt      3420
     taaggaaatg gatttccaac aaaccagaaa tattaaaagt tgtagaggat acaggtgata      3480
     acaagttaat aactattaaa gaaaatgagt ttgtcaaaac attgggactt caatgggaac      3540
     cccaaaaaga caattttaaa tttaacgtta acttaggaat ttctaaaaaa gaaaataagc      3600
     gaacagttct ttccacacta tcgaaaattt acgacccatt agaatggttg gccccagtaa      3660
     ccattacagg gaagctattt gtgcaaaaac tttggatttc tgaaaataac tgggatcagg      3720
     aattatcaaa tgatgatgcc caggaatggt cggattataa agaaaaactt ttattattgg      3780
     agaaaatccg aataccgaga tggattcaaa gcaaattgaa ttcggttatt gaattgcacg      3840
     ggtttgcaga cgcttcggaa aaggcatatg cggcagtagt atatgctaaa gtaggaagat      3900
     tggttacaat agtagccagc aaaagcagag taaatcccat taaaaatagg aaaacaattc      3960
     cgaaactaga gctgtgtgca gctcatctat tgagtaaatt aataaacaaa attaaagaat      4020
     caattaataa tgctgcaaaa atatacgcat ggagtgattc taccataatt ttggcttgga      4080
     ttaaaggtgg tcaaagcaaa atcaaattta ttaaacatag gacagatgaa attcgaagat      4140
     atacagatgt agaatggaat cacgttaaat cagaagataa tccagcagat gcggcgtcaa      4200
     ggggaatatc ttctggtgaa ttaataaatt ttggactttg gtggaatggg ccaaattggt      4260
     taaaagaatc aaaagaaaat tggccgacta aatcaattgc agcagaagaa acaagtgttc      4320
     atgcagtttt aacttctgag gaggatatta tccataattt attgggaaaa tattcatgca      4380
     tgcacaagtt aacaagaata atttgctaca tagttcggtt tattaataaa aaaggagcag      4440
     aaatwtcaat ttagtgcaga gctccacagt ttatataata ataaagaaat aaaaatcaat      4500
     tmaaaaattc taagcctgca tccatttctt gatgaggata aaattatcag ggtaggcggg      4560
     agattgcaaa attccaatgc caaattcgaa gtaaaacatc cgattattct cgaaaagggc      4620
     acatttctgc attaattata gaaaatgctc ataatcaaac cttacatggt ggaataaatt      4680
     taatgagaac atacattcaa agaaaatatt ggatttttgg attgagaaat tctttaaaga      4740
     aaaaattaaa tgaatgcacc aaatgtgcaa gatatcgtca aatcactgca caacaagtaa      4800
     tgggaaatct acccaaatat agggtaacca tgtcgtaccc atttttgaat acaggtgttg      4860
     attacgcagg accttattat attagatgtt ccaaaaatag aggtcagaaa acgtataaag      4920
     ggtatatagc agtatttgtg tgcatggcaa caaaagcgat acatttggaa gtagtaagcg      4980
     atttaacttc tgatgccttt ttagcggcgc tcaaaaggtt tatcgcaaga agaggaaagt      5040
     gtgctgctat ttattccgac aatggaacaa attttgtagg cgcagcaagg aagttggacg      5100
     aagagttggc gaaagcaata aaagaaaatt ccgcggttgc atctcaactc gggaaagagg      5160
     gaattgagtg gcattttatt cccccggcag gacctcactt tggaggtatc tgggaggccg      5220
     gcgtaaaatc tatgaaatac catctaaaac gggttattgg tgacggtagt ctgacatacg      5280
     aagagatgtc gacattgtta tgccaaatag aaggagtttt gaactcacgc cccctatatt      5340
     tatcagataa tgatatagag gacaatgaag ttctaacacc tggacacttt ctgataggac      5400
     gaccaccgct ggatgcgatt gagcccataa atatgaatga aaaaataggg aatttagata      5460
     ggtggaaatt aattcaaaaa atgaaaagag atttttgggt taaatggaaa gaggactact      5520
     tacatacact acaacagagg tataaatgga aaaaaatatg cccaatattg aaaagggaca      5580
     agtagttcta ataaaggatg aatgttgtca tccatcgaga tggcctttag gaaagattga      5640
     agaagtacat aaaggtaagg atgagaaagt ccgggtagta aaggtcaaga tgcaggatgc      5700
     atgcatttct cgaccgatca gcaaaatttg cccactttta ggaataaagg ctgctgaaaa      5760
     taatgaagaa gtcaaaccaa aaaggataac taggggtgga tctagggtat ccaagttggg      5820
     gttgataatg agcatgctga tattaatgat attttgtcag atgtctaatg cagcaacttc      5880
     ctcagaaaat atacctaagt ataaggtgga aacgataaat aaaacgtcag caatatattt      5940
     ggatccaatg ggcgaagtag aaattgtctc ttcctcttgg aatttagtcg ttttttacaa      6000
     atggatgcct attttgaaat gataagaaaa ggaagtgctc tagtaaacaa gatgagactg      6060
     gtatgtgaga agcttcatag cttcgaagat cagtgcaacc ttgtactaga caatacatta      6120
     aaacaactga ctgagttgga agaaaacaat aaattgttta tggctcatag cagccaaaga      6180
     aagaaacgag ctccatttga gtttatgggg tccttatatc acattctgtt tggaataatg      6240
     gatgaagatg ataggattca aatggagcaa aatatgagaa atttattaga taaccaatac      6300
     agccttgatg aactaggcaa aaagcaattg tctatagtgg attcaacggc taatgttctt      6360
     aaaaagacaa atgaggaagt taatagtaat ttcatatata tgaacaaacg aatagagaat      6420
     atgamagcta tacttcaaga aagttactac gtttataagg agtctataaa cttctttatg      6480
     gtaacaaaac agttgactag tttgattgaa gattgtgaaa agacacaagc aggtataatc      6540
     agcttactaa ttgatataaa tcatggccgg cttaacacta atattcttaa gccaagtcag      6600
     cttaaaggag aaatatctaa gatcaaggaa agtctatctg aaaaattagt tttaccagga      6660
     aaaagaactg gaacagaact aaaagaggtt tatacgcttt tgacagctag gggtttgttt      6720
     gtagacaaaa aattgataat aaatgttaaa ataccattat ttagcagaca cccatcgaaa      6780
     ttatataggg taattccagt tccagtttgg tcagaagaga atttactaat agctaactta      6840
     aaatcagagt atttagtgta caattttgaa gttgactcat atcatttaat gacggaaacc      6900
     actttgaata agtgccaaaa gtggcaggct caaagaagag tttgtgaagg aaattggccg      6960
     tggagtaatg ccaacgattt ggcatgtgag ttaagaccac tcaagccagg tagaccagct      7020
     aattgtgtat ataagcgaat attagattct aactcgcatt gggttgaatt agaagcaaaa      7080
     agcacttggc tctttaaggt tcgtatgaat acaaaaataa gaattcaatg cgaacattca      7140
     aaaatggaat tagtcaattt gccagaggaa ggaattttaa ctctaaggtc ggattgcaca      7200
     gctcgcacag acgataaaat actagtagca caatatgata ttaaaacaga gaggcaagat      7260
     gtgttatcat cagcgtatat aggtgatatc acggatatac cgaaaattgt ttggagccca      7320
     tttgagagcc actcaaccaa ccatagtgca gaaattgata ggctatcaaa agaattagca      7380
     aatttaaaag aaacacatat agaattgaag ggattaagtg tacatcatat atctggtcat      7440
     acctctctaa ttatatgtat gttgatcgtt gtaattttaa ttatatatgc aatacgtaag      7500
     tgtagcatta acaggcaatt gcaagccata acttttggag gccgtttaca agatgcttaa      7560
     ttatttaaag cgtaattgtt aaataaataa aatgtttgta tattgtaaaa ttttgtattt      7620
     tatatgtcaa ttaaaaataa aaactgcact cctaatcttg ctggcccttg gcagaa          7676
//
ID   BEL-22_DTa-I repbase;    DNA;    INV; 8280 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.08, Created)
DT   28-JUL-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_DTa-I.
XX
NM   BEL-22_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8280
RA   Kojima N.F. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1605-1605 (2012).
XX
RN   [2]
RP   1-8280
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1803..7187
FT                 /product="BEL-22_DTa-I_1p"
FT                 /note="DUF1759 , DUF1758, RT_pepA17, Peptidase_A17,
FT                 rve."
FT                 /translation="MSRESSNKLPPVSSPKVPKITIRTPTPTKVKTPITKR
FT                 APSPIERSTRASTKMVATAAELALNQFIEVSDRLSELEARINIPAAVPPTL
FT                 SVLNIRRDEIKEVWVRIKKEYDACTACLVAAGESAADMLPVLKAKYGYCYS
FT                 AYERCGAQIADQIAQTPQNPQATSTPDTPQTYIPSGCHLPPCDTEVFTGDY
FT                 LRWPTFRDLFTAIYINNPRLTPVEKLFHLNAKTRGDAHNIVANSPLTNDGF
FT                 RSAWDNLTERFENKRLLVNSQLKILFNVPSVTQESGSALKELQSTIQGCLT
FT                 ALEMSGIQVETWDCLLVYMCSSKLPKLTLSLWEQSLHNKAEIPTWHELNVF
FT                 LTERHRTLEAIDDVRPSGSSQAQPRASTSNSASRRINSYETRVTPRQPRGC
FT                 DLCNRENHPIRTCAQFLRMTVDQRIAYIKRKQLCLNCFARTHQLRDCESAH
FT                 NCFTCRGRHHTLLHRGTPSPARANPTPTPRSRPNTPGPSAASGTQPTLQNY
FT                 FAAGSRSVLLGTAMINICHQGSNYQARALIDSGSEATFITERLFNLIKLPF
FT                 QVIQAQVSGLNQTVSAETKKLCQLTIRSPTRPSLQLNTTAYVLPQIAGNLP
FT                 SCPLPQHFLRDLPELPLADPKFYESAQIDLLIGADILPSILLSGTRANICG
FT                 SLLGQETIFGWILTGPVPAPRQDRISSFSTHVAHTYEASLDKLLTKFWEVE
FT                 DLPVKVAKESDVICEDNFLRTTTKDDTGRYVVSLPFRDPENMKCSLGHSRS
FT                 LALAQFLRNEQRLKRDSTLKSKYDSVIQEYLDLNHMREVPPTHDSACYYLP
FT                 HHAVLKPESTTTKLRVVFNASSPSDNGVSLNDILHAGPVLQSDLTIQILKW
FT                 RYFRFVYSADIEKMYRQIWVDPKQTAFQRILFRNREGYIRDFELKTVTFGV
FT                 NCAPFLAIRVLQQLATDVQLTHPRASKVIRGCMYVDDVLSGADSAEEAHLT
FT                 IRELQSALDSAGFPLRKWTSNHKEVLAHIETNHLLNAEFLEIDTESTAKTL
FT                 GVRWKATSDEFFFAPPDLSNEATLTKRHVLSQIAKLFDPAGWLAPFVVCAK
FT                 IFMQEIWLHDLGWDDELPIELCQKWRDFLQSYSVLDQVRIPRWVSFRPEFR
FT                 VEHHGFCDASQKAYGAAIYVRVEIGHTTLVHLLTAKTRVAPVKTVSLPRLE
FT                 LCGALLLSEMAESILPHMPVLSSKLHCWTDSTIVLAWLAKPACQWTTFVAN
FT                 RVTKITQSTEAANWAHVQSEHNPADLASRGVPLQDLIDNSLWWHGPTWLSK
FT                 PRDQWPSQSTDLQVTEVERRPVKAHVASIPTEDILDRFSKLDRALRVLAYV
FT                 HRFVQRCKKQSQMSEVRLEAQELVAAERLMVISTQRRYFSNEYRCLSQKRP
FT                 VSATSSILSLNPFLDQKGLIRACGRITASENLRYDERHPIILPYECALSRL
FT                 LVNFTHLITLHGGNQLVVRLTRSRYWIPRIKNLVKAVINSCKVCVIHKKRL
FT                 QIQMMGSFPKERVSFSRPFTYTGMDYAGPFDIKNYTGRACLITKGYVLVFV
FT                 CFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQVQSDNGKTFVGAATL
FT                 LSRDFLQAVKESVTDAYSHQQLNWQFIPPGAPHMGGLWEAGVKSFKTLFYK
FT                 STATRKYTFEELSTLLAKIEACLNSRPLSPMSEDPTDLLALTPGHFLVGGP
FT                 LLSIVEPELKGESKSIVNRWQHLKALHQQFQARWKEEYLKELHKRNKWQAP
FT                 TANLRVGDLVVVKEDNLPSNEWRLGRIDSVFPGADGNVRVVNILTARKIIK
FT                 RPVTKVVLLPGEHSNRLPQPTSSA"
FT   CDS           7235..8227
FT                 /product="BEL-22_DTa-I_2p"
FT                 /translation="MFVSFFVHYSLPDHIMVPRPRSAQALESRRTRGLNSY
FT                 RCRVCRGIHPLRKCQRFLKLSAEKRLRAVLVNKYCSNCLAHEHSDVSCRSG
FT                 DKCKTCSGKHHTLLHMHERPLPSATNQRSRRQNPPTRQALAPARRSASAAS
FT                 QQRSRRQNPPTRRALASPPRSASSTPAPSLASILQRHSVNVLPTAMVILET
FT                 GLKKFDTAALIDPCTPTSCIDASLATAFRLPTTTVGDERICTATIRSKRDD
FT                 DFKLEVVLKVEPNVRIRTPIRELADTVVSKYSDLPLADERFYLPATISVVL
FT                 GADVYGKVIRPGFHLVDEGLPVAQRTTFGWILSGACNLS"
XX
SQ   Sequence 8280 BP; 2233 A; 2229 C; 1727 G; 2087 T; 4 other;
     tttttgatcc attcgagccg gattgctcca ccagataagt gccacttatt attttttatt        60
     aactgccggt cgacagtcag ccattcgaaa acataattcg tttgactttc tgtacgattt       120
     gtctaaaatc caagtccgat ttaatccgac aacggcagtt agtaaattac atttccaatt       180
     ccgtcttcta tttcttcgtc tcctttaacg tgcggccata ttgtctattt tccaattccc       240
     tttcttgtgc atattgatgt acaagtttca tattcacatt tggccgtaca tccagtaaaa       300
     atacatccaa aattaaatcg aagaaattgc aaaatattaa tccaaattaa agtgtgcaaa       360
     taaaaagtca agcgtacagt gagaaagaaa agtcagtgaa cagtgaaaaa taaatcaaat       420
     tcaaaaatta aaattcaatt awtttcccac aaaaattaag tgttccgcca atttaggccc       480
     acaaacactg agactgattt ttttactgta tatccgctgt gacaaatatt tgcatacata       540
     attcaaaatc caaatacagt ccacaataaa tcgaaaatac acaacacata cccgccggca       600
     aaatttaaaa taaaaatttt ccgccatctt gattgccatt tactccacat cttatataca       660
     tatttattac atatattata catattacat attccacata tattacatcc atattccaca       720
     tatattacat ccatatatta cacacatatt acatccatat attacacata tattacatcc       780
     atactcccat acatattatt tctatgaaaa cacccaatcc cgaacatcga agtatttccg       840
     tcggccataa atatatatat taaataaatt cccaaagccg acgtgaaata acttttgagt       900
     ctcagtgtgt tcttttattt ccccttcaac atacattcac acatacatac atacgaattc       960
     cccaaattcc cgcgcattcc agcatttctc gcacatagcc cgcaaagggg ctttatgcac      1020
     gagttcattt ttgggcattt gtgtttatcc aacgattaaa gtgctcttta ttccgagcca      1080
     ttccaaataa attccaaata aataaaataa agtaaaaaac caaaaaataa ataccaagct      1140
     caattctaat aaacttaaat aaatactgag agtcaaaaaa ttaaaattaa atttacaaaa      1200
     tccctcatcg ctagagttcc aaaaaaatta aataaaatac tgtcsacatc ccagaaacca      1260
     gtggaatcaa tctattaata ttgttcccgg tttgcgtccg aatcaattag ttaccgcgtc      1320
     cattccagta tttttattta tttattgagt ttggtatatc catatatcta cttgatttat      1380
     tttcttgttg gggagaaaaa agaaaaaagt tccaaaaaaa tatatcatcc gcataccact      1440
     gcaacgtatt tttttgtttg gtctccgaat aattttaaaa aaaaaaatag agaagaatac      1500
     taacgatatc caatcccatc ctaattcggc cagccacccc tcataaaata ctaatcgaaa      1560
     aatacttcat caagaacagt attttttcag tattttattt ttagtatttt tggtattttt      1620
     tgcgattctt gttccatcgt tccaccaaaa tcctggggat tatttttaca ataattcagc      1680
     cacgcatatc gactgtttta gcaggtcgag accctatttc caccagtccg taatttcttt      1740
     tctgattttt gtccgaaaga tcagcgcgca cattccgaat caaaacagca tcctagtttg      1800
     gtatgtccag ggaaagttct aacaaactac cccctgtttc atcaccgaaa gttccgaaaa      1860
     tcactataag gacgcccaca cctacaaagg tcaagacgcc aattaccaaa agggctcctt      1920
     ctcctatcga aagatccacg cgagccagca cgaaaatggt tgcaacggct gccgaactcg      1980
     ccttaaacca atttattgaa gtctcggatc gactttccga attggaggcg cgaataaata      2040
     ttcccgcggc ggtccctcct acgttgtccg tcctcaatat tcgccgagac gaaatcaaag      2100
     aggtatgggt ccgcatcaaa aaagagtacg atgcgtgtac cgcgtgcctt gtagcagccg      2160
     gagaaagtgc agctgacatg ttgccagttc tcaaggctaa gtacggttac tgctacagcg      2220
     cgtacgaaag gtgcggcgcc caaatagcag accaaatagc gcagactccg caaaatccgc      2280
     aagctacctc cactccagat actcctcaga cwtacattcc gtcaggctgc caccttccgc      2340
     cgtgcgatac cgaggttttt accggcgatt atcttcgttg gccaaccttc agggatctat      2400
     tcacggcaat ttacatcaac aatcctcgac tcactcctgt cgagaaatta ttccatctca      2460
     atgctaagac gaggggcgac gctcacaata tagttgcaaa ttcacccctt actaacgatg      2520
     gctttcgctc agcgtgggat aacctcactg agcgtttcga aaacaagcga ttgttagtaa      2580
     acagtcaatt gaagatactc ttcaatgtgc cgtccgtcac acaggagtct gggtcagctt      2640
     tgaaagaact tcaaagtacc atccaggggt gccttacggc gttagaaatg tccggtattc      2700
     aggtcgaaac ttgggattgc ctcttggtgt atatgtgctc atccaaactc ccaaagctta      2760
     cgctttccct atgggagcag tcccttcaca acaaagccga gatccctacg tggcatgagc      2820
     tgaacgtttt cctaacggaa cgtcacagaa ccctagaagc catagatgat gttcgaccat      2880
     caggttctag tcaggctcag cccagggcat ccacatccaa ctcggcgtct cggagaataa      2940
     attcttatga gacaagggta acgcctcgac aacctagagg gtgcgatctc tgtaatagag      3000
     aaaaccatcc aatacgcaca tgcgcccagt ttctccggat gacggtcgac caacgcatcg      3060
     cctatatcaa acgaaaacag ctgtgtttga actgctttgc gcggacacat cagctgcgcg      3120
     actgcgaaag cgcacataat tgcttcacgt gccgcggccg ccatcacacc ctcctacacc      3180
     gaggcacccc atccccagcg cgcgcaaatc caacgccaac gcccagatcc agaccgaata      3240
     ctcccggtcc ctcggctgcc agtggcacgc agccaacact tcaaaattat tttgcggcag      3300
     gctctaggtc agtcctccta ggcaccgcca tgattaatat atgccatcag ggttccaact      3360
     accaagcgcg agccttaata gactccggat ctgaggckac cttcattact gagcgccttt      3420
     tcaacctgat taagctgccg ttccaggtta tccaagcaca ggtctcaggg cttaatcaaa      3480
     cggtctccgc tgagactaaa aagctctgcc aattgacgat tcgttctccg acccggccta      3540
     gtttgcagtt aaacaccact gcctacgtgc ttccgcaaat agccggaaat cttccctcat      3600
     gtccgcttcc gcaacatttc ctgcgagatc ttcccgaact tccactagcg gatccaaagt      3660
     tttatgagag cgcacaaata gatcttttaa tcggggccga tatacttcct tccattctac      3720
     taagcggcac ccgagcgaat atctgtggct ctcttctcgg tcaagagacc attttcggct      3780
     ggattctaac aggaccagta cccgctccga ggcaagatag aatttcatcg ttttctacgc      3840
     atgttgcaca cacgtacgaa gcgtctctcg ataaactcct caccaaattc tgggaggtgg      3900
     aggatctgcc agtaaaggtg gcaaaagaat ccgacgtgat ctgtgaggat aatttccttc      3960
     ggaccaccac aaaagacgat accggcaggt atgtcgtgag tcttcccttt cgagatcctg      4020
     agaacatgaa atgctcccta ggacattcca gatccctggc gttggctcaa ttcttaagaa      4080
     acgagcagcg gctaaaaagg gacagtacgc taaaatccaa gtacgactca gtaattcaag      4140
     aatatctcga cctcaaccac atgagagaag tccctcctac ccacgattca gcgtgttatt      4200
     acctcccaca ccacgcggtg ttaaaaccgg agagtacgac caccaaactt cgagtggtat      4260
     tcaatgcctc cagcccttca gacaatgggg tcagcttaaa tgatatcctt catgctggcc      4320
     cggtcctaca gtccgatcta accatccaga tcctgaagtg gcgatatttc cgttttgtgt      4380
     acagtgctga tatcgagaaa atgtaccggc agatctgggt agatccgaag cagacagcgt      4440
     tccaacgtat cttattccgc aatagagaag gatacattcg cgattttgag ctaaaaactg      4500
     ttacgtttgg ggtcaattgt gcaccgtttc tggcaattcg ggtcctgcaa cagctggcga      4560
     ccgacgtgca actaacccat ccgagggcga gtaaagttat tcgtggttgc atgtacgtcg      4620
     atgatgtcct ctcgggagct gactctgcag aagaggctca ccttaccatt cgcgagttgc      4680
     agagtgctct cgattcggct ggttttccat taagaaagtg gacctccaac cataaagaag      4740
     ttctggctca tatcgaaacc aatcatcttt taaacgccga gttcctcgag atagatacgg      4800
     aaagcacggc gaaaactctc ggagtccgtt ggaaagcaac atccgatgag tttttcttcg      4860
     cccctccaga cctatccaac gaagccacgc tcacgaaacg tcatgttctt tcccaaatcg      4920
     ccaagctgtt tgatccagca ggctggctcg ctcctttcgt ggtctgtgcc aagattttca      4980
     tgcaggagat ctggcttcat gatcttgggt gggatgatga actcccaatt gaactgtgcc      5040
     aaaagtggcg tgattttctc caaagctact cggtcctaga tcaagtccga attcccagat      5100
     gggtttcctt ccgcccagag ttccgagtcg aacatcatgg attctgtgac gcctctcaaa      5160
     aggcgtatgg tgctgcgatc tatgtgcgcg tagaaattgg gcacacgacg ctagtgcatc      5220
     tccttacagc caagacgcgc gtggcgccag tcaaaactgt gtcgcttcca aggctagagc      5280
     tgtgtggagc tctattgctg tccgagatgg ctgaatccat cctcccccat atgccagtgc      5340
     tgtcctcgaa actccattgt tggaccgatt ccacaattgt gcttgcatgg ctcgccaaac      5400
     cagcatgcca atggacaacg ttcgttgcca atcgggtaac aaagattacc cagtccacag      5460
     aggcagccaa ttgggcacat gttcaatccg aacacaatcc agctgacttg gccagtcggg      5520
     gagtgcctct acaagacctg atcgacaact ccctttggtg gcatggacca acttggttgt      5580
     caaagccacg agatcagtgg ccttcccaaa gcaccgactt acaggtgacc gaagtggaaa      5640
     ggcgtcctgt caaggcccat gtggcgtcca tcccgacaga agacatcctt gatcgctttt      5700
     ccaagttaga tagagcttta cgggtccttg cgtatgtcca ccgttttgtc cagcgatgta      5760
     agaaacagtc gcagatgtcg gaagtccgtc tagaagccca agaacttgtc gccgctgaac      5820
     ggctcatggt cattagcact cagcgcagat atttttctaa tgaatatcgc tgcttgagtc      5880
     aaaagcgtcc tgtgtccgcg acaagttcaa tcctctcctt aaaccccttt ctagatcaga      5940
     aagggcttat aagggcttgc ggccgcataa cggcctccga aaacttgcga tatgacgaac      6000
     gacatccgat aatactcccg tacgaatgtg cactctctcg actactggtg aactttacgc      6060
     atctcataac gttgcacgga ggtaaccagt tagtcgtacg tctcacccgg tcaagatact      6120
     ggattccgag aataaagaac ttggtaaagg ctgtgattaa ctcctgcaag gtctgcgtta      6180
     ttcataagaa gcgcttgcaa attcagatga tgggaagttt tccgaaagag cgagtgtctt      6240
     tttcccggcc attcacgtac acagggatgg actacgctgg ccctttcgac atcaaaaatt      6300
     acacaggcag agcgtgccta attacaaaag ggtatgtgtt ggttttcgta tgtttctcca      6360
     caaaggccat ccatctagag cctacatccg atctgacgac cgagaaattt ctcgccgctt      6420
     tcgctcggtt cgtatccaga agaggttgtc cccgtcaagt gcagtccgac aatgggaaaa      6480
     cctttgtcgg cgctgccacc ctgctctccc gagattttct acaagccgta aaagagtctg      6540
     tgactgatgc gtatagtcat cagcagctca actggcaatt cattcctccg ggggcacccc      6600
     atatgggagg cctgtgggaa gctggtgtca aaagcttcaa aaccttgttt tacaagtcca      6660
     ccgctactcg aaagtacacc tttgaagagc tttcaaccct cctagcgaaa attgaagctt      6720
     gtctaaattc cagaccgcta tctcccatgt cagaagatcc tactgatctc ttagcgttga      6780
     caccagggca ttttctcgtc ggcggacctc ttctgtccat agtagagccc gaattaaaag      6840
     gggaatccaa gtccattgtg aatcggtggc aacacttaaa ggcgctccat cagcaattcc      6900
     aagctcgatg gaaagaggag tatctcaagg agctccacaa gcgtaacaag tggcaggccc      6960
     cgaccgcaaa tctccgcgtt ggcgacctgg tagtcgtcaa agaagacaat ctgccctcga      7020
     atgagtggcg ccttggcaga atcgactctg tttttccggg ggctgacggc aatgtccgtg      7080
     tcgtcaacat tctcacggca cgcaagatta ttaagcgtcc cgtgaccaag gtggttcttc      7140
     tgccaggaga acactccaac cgtcttcctc aaccaacatc ctccgcataa ttctccaacc      7200
     atcctcgtca tctaatcatt tttaaatcat ctccatgttt gtttcttttt ttgtccatta      7260
     ctccctacca gatcacatca tggttcctcg tccacgcagc gctcaggctt tggagagcag      7320
     acgtactcga ggtttaaatt cctaccgttg ccgagtctgc cgtggaatcc atccgcttcg      7380
     gaagtgccag aggttcctaa agctgagcgc agagaagcgg cttcgagcag tgcttgtcaa      7440
     caagtactgc tcaaattgtc tcgctcacga gcactctgac gtgagttgtc gcagtggcga      7500
     caagtgcaaa acgtgcagcg ggaagcacca cacgctcctc catatgcacg agcgccctct      7560
     gccgtcggct accaatcagc gttcgcgccg gcagaatccg ccaactcgcc aagcgctggc      7620
     cccggcaagg cgctcggcat ccgccgcttc tcagcagcgc tcgcgccggc aaaatccgcc      7680
     aactcgcaga gcgcttgcct ctccgccgcg ctcagcctcc tcgacaccgg caccgtcact      7740
     ggcgtccatc ctccagcggc acagtgtcaa cgtcctgccg acggccatgg taatcctgga      7800
     gaccgggctc aagaagttcg acacagccgc cctcatcgac ccgtgtacgc cgacaagttg      7860
     catcgacgca tccctggcta ctgcgttccg cttgccgact accaccgtcg gcgacgagcg      7920
     gatttgtacg gcgacgattc ggtcgaagcg cgacgacgac ttcaagttgg aggtggtcct      7980
     gaaggtggag ccaaacgtcc gcatccgcac ccccatccga gagcttgctg acaccgtggt      8040
     cagcaaatac agcgacctcc cgttggccga cgagcggttc tatctaccgg caaccatctc      8100
     cgtggtcctg ggtgccgacg tctacggcaa ggtcatccgt cctggcttcc acctggtcga      8160
     cgagggactc ccagtggccc agcggacgac tttcgggtgg atcctgtccg gtgcctgcaa      8220
     cctgtcctag atgacacgtg gggcttcgtt gcaacgctag cgattgcaag gggggcggaa      8280
//
ID   BEL-22_DTa-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   20-AUG-2012 (Rel. 17.08, Created)
DT   20-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-371
RA   Kojima N.F., Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1606-1606 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identity to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 371 BP; 72 A; 136 C; 70 G; 93 T; 0 other;
     tgtttacgcc gcttgccccg ctcttaaatc cccctcttcc aatgctcgct cttccctcgc        60
     tgggaatgcc tacttccagg ctctcccgct ctcccgcctt cccacgcccg ggatctctcc       120
     acagcgctct gaagcacagc gctcattagt tttaagttta gttctcactg taaactatac       180
     gaaatacatc gcccggccgg tccgcgctaa gtacggaaag tcagtgtgtt ctcctttctc       240
     tcgcgcttcg cgatcgtcga gtgttttcat tctctccccc acagcttgcc accggctacc       300
     ttgcaacaag ccgcaacgcc gacgaagctg ccttcaacta gaagaaatac ttgcgacgcc       360
     cccaccaaac a                                                            371
//
ID   BEL-22_DWil-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_DWil-LTR.
XX
NM   BEL-14_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-493
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 493 BP; 163 A; 85 C; 82 G; 163 T; 0 other;
     tgttggtgtt tagattatat aaaataagct aacattaaga caattataat atagaacaaa        60
     tggaaatgta tttcaattaa gtatgtaacc cgattataga tatcgatggc tcatcagtca       120
     taagtagatc tgatatggtc agcagtaaac aataaagtta attaagctgc tatggttagc       180
     tattatcaat aaagacgtac tttgctgacc taacactatg tcgaactatg cactggtgag       240
     ctcgctattt tgtactataa aagaaatgca ttattcttag taagatcaga taccaattgt       300
     agctacttcg ggtgtgcatc gctgtgtctt tggcccccat ctctaccttt gtaatctcac       360
     tccgaggtcc acccaattta tgtgttggtt gcgacaacct ttagtcactg gtttatgtgc       420
     tagtgcctat atatatatat aaataaataa acatttaata acttcaagaa acactaacgt       480
     ctttcataga aca                                                          493
//
ID   BEL-22_SiCu-I repbase;    DNA;    INV; 5666 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5666
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4996-4996 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..5457
FT                 /product="BEL-22_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADKKPSVSVVVKEEEEEETKDETTEEGDPSKLTVKD
FT                 HVRRLSNTEEGQSEKPKTLKKTKTTVDYTVLVEAHKDTMISAGCEFEIELE
FT                 KEYREMDYVHYAWRHYHSQYKAYQEAVLKLQEQLLKDKNYEEVKRLRYSAS
FT                 MQTKSHIKHEYAYQKALPPTTTPPTPSTPTSQAHASIDNIAKMLLPKRELP
FT                 QFTGDVREWLAFWASFSEINSDWSLSDSDKFHFLIQSTKEGSSARKHLRSF
FT                 PFSGNNYRPALKSLEERYGRNNVLIKVYVRDLLQLVIEASTGKPVDFGDLV
FT                 TTITSQIRNLESLGVTQDKCAQVLYPVVESCLPPDVLQAWQRSAIFKEELP
FT                 DLIKFLQSEVNSQTERNLAHFHLGGGNNSSRGEGKPSKKNNSSKEVPTTST
FT                 FYNNSNNGGAGKANGNSGGGNNSNKPTCAFCEKGHSTLECRTALGMTLQNK
FT                 REILKSKNHCFVCLRKANHMARECRAKPKCSICSRNHFALMCGNLDSVLEK
FT                 RSSTPQNPKDMDDDLFAAPPTQSPPKTPPSTTSMANHFTATEVPLQTLVVT
FT                 VHGTNGRSKAVRAVIDPGSQKSYVLSNLAEELQLKRMGEEEVVHQLFGAVK
FT                 SKLQKHNVVKIFVSDLKGHNNCNFDVSTSEQIAVDIITPPNGPWMNQFDKK
FT                 GIKFTDVYSTSETPISLLIGNDVSARLTTGRKCDLEYGPVAVETLWGWVLC
FT                 GKCPSNQVKSTSSMLVTNLLNIEGLPLSALWELEAIGISDPTERETKEEIE
FT                 RATQAHFDKTVKQLTDGRYQVCLPWIIGRKEKLSSNYFAASKRLRSLTKSL
FT                 ESQGYLEKYDELFHQWKLDGMIEEVLNPSPPNDNVYYLPHRAVIKLTSTTT
FT                 PIRPVFDGSAKARGALSLNDCLDKGPNTLEQIPPLLHRVRLRRVGALADVK
FT                 KAFQQIEVAPADRDCLRFLWLDNLSSRNEKIYRHCRVVFGVTSSPYLLGAT
FT                 LQHHLSKATGKDAVVAKQLLNSNYVDNVVLSLNSLEEAHEFKRASTALLSP
FT                 AQFDLRGWEFGPQEDEKILPVLGLLWHVKQDTLSLDVSNVATKITCEPSLR
FT                 HVLRLVHSIFDPLGFASPFTILGKLLLRRCHDLKTGLDAELPDDLKDDVLK
FT                 WAAQIPLLADLKLPRHVEFGENKNYSINVFCDASSMAAATAIYLRVEDASG
FT                 IRLFLLAAKSRVAPKKKATIPRLELVACVLASRLAHGVLEAIRNPVIPVTF
FT                 WSDSATALAWIRGTGPWGVFVTNCVAKIRELTDISSWRHVPGKLNIADLPS
FT                 RGCSAKKLLESQWWEGPQWLTSPPRQWPSSEDIPNDDLVDTERKKIVTVTM
FT                 TTAAAHPLQEFLRCSEYPKIVKSLSYWLRFKRNLQEKCKSPKSEKHQSSKK
FT                 NDIEKPSTTEIVQAEVVLFRYLQQHFRDEPENIKGXNVFSDEDGLLRTRTR
FT                 LSIADDPGFNYPILLPEKNEFVSRLIRWEHKRHCHVGVSTTLGFLREKFWV
FT                 VNGRRTVRSVLTKCWVCKRFSARRSTVSEAPLPSVRTEMGIPFAVTGVDAA
FT                 GPLIMKGGEKVWILLFTCANYRAVHLELVDTLTADGFVRALRKFASRRGRP
FT                 KILYSDNARGFVAAEKSLKNLNWKKVKEYAATSRIEWRFNPPAAPWWGGWW
FT                 ERLIGLAKQLLRRILGKRVVHRLELETLLCEVEDSLNSRPLTYSSDSPDDP
FT                 IPLTPNHFVRHAGTHFLPXADLHDAAATRATYKKLQHLREALRSRFRLEYL
FT                 GLLRGHHNNKSSSELKAGDIVLIEQDNHKRLDWPLGVILEAIPGKRGDGKH
FT                 RLFRVKTKNGEMLRPAQRLFLMEQHLE"
XX
SQ   Sequence 5666 BP; 1603 A; 1413 C; 1326 G; 1321 T; 3 other;
     ttgctggcga acctgccagg attagtggca gttaagtgac aattattagt gcttctcaca        60
     agaatggcag acaagaaacc atccgtttcc gtcgtggtga aagaggagga ggaagaagaa       120
     actaaagacg aaactactga agaaggagac ccstccaagc tcaccgtaaa ggatcatgtt       180
     cgtcgactca gcaacactga agagggacag tcggagaaac ccaaaactct aaagaaaacg       240
     aagacaactg tagattatac agttcttgtc gaagcccaca aggacaccat gatatctgca       300
     ggatgtgaat ttgagataga gctcgagaag gagtaccgtg aaatggatta cgttcactac       360
     gcatggcgtc attaccactc tcaatacaag gcgtaccaag aggcagttct gaaactacaa       420
     gaacagctac tgaaggataa aaactatgaa gaggtcaagc gtcttaggta ctccgcctca       480
     atgcaaacaa aatcccacat aaagcacgag tatgcttacc agaaagcgtt accaccgaca       540
     acgacgccgc caacgccctc aacaccaacg tctcaagcac atgcgtcaat tgataatatt       600
     gccaaaatgt tgctgcccaa acgagaactc ccacagttca ctggagacgt cagagaatgg       660
     ctagctttct gggcctcctt ctccgaaata aattcggact ggagcttatc agatagtgac       720
     aaattccact ttctcatcca gtcgacaaag gaaggttcgt ccgccagaaa acacctccgg       780
     agtttcccgt tctctgggaa taactacagg ccagccctga agagcctgga agagagatac       840
     ggacgtaaca acgtcctcat caaggtctac gttagagacc tccttcaact ggtcatcgag       900
     gcttctacag gaaagccagt tgattttggt gacttggtaa ccaccatcac ctcacaaata       960
     cgaaacttgg agtcactggg ggttacccaa gacaaatgcg cccaggtact ctaccccgtc      1020
     gtcgagtcgt gcctcccacc ggacgtgctc caggcgtggc aacggagtgc catctttaag      1080
     gaagagctcc cggatcttat caagttcctg caatccgagg tgaacagcca aaccgagcgt      1140
     aaccttgctc actttcatct cggcgggggc aacaatagca gcagagggga aggtaaaccc      1200
     tccaagaaaa acaacagcag taaagaagta cccaccacct caacattcta caacaacagc      1260
     aataacggtg gtgctggaaa agccaacgga aacagcggag gtggaaacaa cagcaacaag      1320
     cctacgtgtg ctttctgtga gaagggtcac tccactctgg aatgtcgaac agctctcggc      1380
     atgaccctac aaaataaaag agaaattttg aaaagcaaaa atcactgttt cgtctgcttg      1440
     aggaaagcca atcacatggc tcgtgagtgc agggctaaac ccaaatgctc gatatgctca      1500
     cgtaatcatt ttgctctcat gtgtggaaat ctggactcgg ttttggaaaa gagatcgtcg      1560
     acaccacaga atcccaaaga tatggatgac gacctgttcg ctgctcctcc gacccaatcg      1620
     cctcctaaaa ctccaccctc tacaacgtcg atggccaatc acttcacagc cacggaagtg      1680
     ccactgcaaa cactggtcgt tacagttcat ggcaccaacg gaagaagcaa agctgtgaga      1740
     gctgtcatcg atcccggatc ccaaaaatct tatgtcctct caaacttggc agaggaactt      1800
     cagctgaaac gaatgggcga agaggaagta gtccaccagc ttttcggcgc tgtcaagtca      1860
     aaactacaaa agcataatgt agttaaaata ttcgtaagcg atttaaaggg tcataataac      1920
     tgcaattttg acgtttcaac ttcagaacag atagccgtcg acattatcac tcctccgaac      1980
     ggcccatgga tgaaccaatt cgacaagaag gggataaaat tcacggacgt ttacagcacc      2040
     agtgagacac caatatctct actaattggg aacgacgttt ctgctagact gactactggg      2100
     agaaaatgcg acctcgagta cgggcccgtt gctgtggaga cgctatgggg ttgggttctc      2160
     tgcggaaagt gtcctagtaa tcaagtcaag tctacgagct ccatgctcgt caccaatctt      2220
     ctcaacatcg aaggattgcc actctctgcc ctgtgggaac tggaagccat agggatatca      2280
     gatcccactg aaagggaaac aaaagaagaa attgaaaggg ccacacaagc ccactttgat      2340
     aaaaccgtca agcaactaac agatggtaga taccaagtct gcctgccttg gattattgga      2400
     aggaaagaga agctgtcttc aaactacttt gccgcatcaa aacgcctacg gagtctcact      2460
     aaaagtctgg agtctcaagg gtaccttgaa aaatatgatg agttgtttca tcaatggaag      2520
     cttgatggaa tgatagaaga agttctcaac ccctctccac caaacgataa tgtctactac      2580
     ctgcctcatc gtgctgttat caagcttacc agtaccacaa cgcccattcg tcctgttttc      2640
     gacggctcag ccaaagctag gggagccctg tcgttaaacg actgcctgga caaaggtcca      2700
     aatactctgg agcagattcc tccacttctg caccgtgtgc gcctacgaag agtcggagcc      2760
     cttgccgatg ttaaaaaggc atttcagcag attgaagtag ctcctgccga tagggactgc      2820
     ctgaggttcc tttggttaga taacctgagc agcagaaatg agaaaatata ccgccactgc      2880
     cgggtggtct ttggggtcac cagtagccct tacttgcttg gtgccaccct acaacatcat      2940
     cttagcaaag caactggcaa ggacgccgtg gttgccaagc aactgctaaa ctcaaattac      3000
     gtggacaacg ttgtcctcag cctgaatagc ctggaggaag cacacgagtt taagagagca      3060
     tcaacagcac tcctgtctcc agcacaattt gatttacggg gatgggaatt tgggccacaa      3120
     gaagacgaga aaattctgcc tgtgcttgga ctcttgtggc acgtgaaaca agacacgttg      3180
     tccttagacg tgtcaaatgt tgccaccaaa ataacctgtg aaccttctct ccgccatgtc      3240
     ctccggttgg ttcactctat ctttgatcct ttgggatttg cgagcccatt tactatattg      3300
     gggaagctgc ttttacgacg ctgtcatgac ctgaaaactg gattagatgc tgagctcccc      3360
     gatgatctaa aggatgacgt gcttaaatgg gctgctcaaa ttccactgtt ggctgacctg      3420
     aaattaccac gacatgtgga gtttggcgaa aataaaaatt actccattaa tgtcttctgt      3480
     gacgcctcat ccatggctgc tgccacagct atttatctcc gtgttgaaga cgcctctgga      3540
     atccgcctat tcttactcgc tgcaaagtcg cgggttgccc cgaaaaagaa agcaaccatc      3600
     ccacgtctgg aactagtggc ttgtgtgctg gcgtcccgac tcgcccacgg agtgcttgaa      3660
     gctattagaa atcctgtcat ccctgtcaca ttctggtctg attctgccac tgcactggct      3720
     tggataaggg gtactggtcc gtggggagtt tttgtcacga actgtgtggc aaaaatacgt      3780
     gaattgaccg acatcagttc ctggaggcac gttccaggga agctaaatat cgcggacctg      3840
     ccgtcaagag gatgctccgc caaaaaacta ctggaatcgc aatggtggga ggggccacag      3900
     tggctcacct ctcctcctcg ccaatggcca agttcagagg acattcctaa cgacgacctt      3960
     gtggataccg agcggaagaa aatagtgacc gtcaccatga ctacagcagc agctcatcct      4020
     ctacaggagt ttctccgctg ttcggagtat cccaagattg tgaagtccct gtcttactgg      4080
     ctccgcttca aacgaaactt gcaagaaaaa tgcaaatctc caaaatcaga aaaacatcaa      4140
     tcatctaaga agaacgatat agagaaacct tcaactactg agattgtgca agctgaagta      4200
     gtcctcttcc gatacctgca gcagcatttt cgggatgaac ctgaaaacat taaagggmtt      4260
     aacgttttct ctgatgaaga cggcttgtta cgcactcgta cccggctctc cattgctgat      4320
     gaccctggct tcaactaccc catcttgcta cccgagaaaa acgagttcgt atcaagactg      4380
     atacggtggg agcataaacg acactgccat gtaggcgtca gcacgacact tggatttttg      4440
     agagagaagt tctgggtggt gaatggaaga cggacggtga ggagcgtcct caccaaatgc      4500
     tgggtatgca aacgtttctc tgcgcggagg tcaacggtct ctgaagctcc actgccctct      4560
     gtccgaacgg aaatgggaat tccgtttgct gtcactggag ttgatgccgc tggtcctctt      4620
     atcatgaagg gaggggaaaa ggtctggatc cttctcttca cctgcgccaa ttatcgggca      4680
     gtccatctag agctggtgga taccctaact gctgatgggt ttgtaagagc cctacgaaaa      4740
     tttgcatctc gtcggggtcg acccaagatc ctgtactctg acaacgctcg gggttttgtc      4800
     gctgctgaaa aatctctaaa aaatctcaac tggaagaaag tcaaagagta tgctgccaca      4860
     tcaagaatcg agtggcggtt caatccaccc gcagctcctt ggtggggtgg atggtgggag      4920
     cgcttaattg gtcttgccaa acaactcctc cgccgtattt tgggaaagcg tgtcgttcat      4980
     cgtttggaac tggagactct gctgtgtgaa gtcgaggact ccctcaacag tcgtcccctt      5040
     acttactcat ctgattctcc cgatgatccg atcccgctta cacctaatca tttcgtccgc      5100
     catgcgggca cccacttcct cccggmagca gatcttcacg atgcggcggc caccagagcc      5160
     acatacaaaa aactacaaca cttgagagag gctctgcgtt ctcggttccg actggaatac      5220
     cttggtctgc ttcgaggtca ccacaacaac aagagctctt ctgagctgaa ggctggggac      5280
     atcgtcctca ttgaacaaga caaccataag cgacttgatt ggccacttgg ggttatcttg      5340
     gaagcgattc ctgggaaacg aggtgatgga aaacatcggc tttttcgtgt caagacgaaa      5400
     aacggagaga tgctgcgtcc tgctcagcga ctctttctca tggagcaaca ccttgaataa      5460
     ataaaatatg atacttgata aatatgaaaa ttgttaaatg ataaaattct aaaaatattt      5520
     cttacctttt gtttattagt caccccaccg gaggagactg gaaaaccact ccttgggaat      5580
     atgatatctc gtggtttccg gtcttgtcta aagtttattt gatgttccaa tcagggcctt      5640
     tatgacctga tcggaaggtg ggagta                                           5666
//
ID   BEL-22_SiCu-LTR repbase;    DNA;    INV; 515 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-515
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5019-5019 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 515 BP; 140 A; 118 C; 98 G; 159 T; 0 other;
     tgtcaaagaa tagcgtagat ttttggggtg atgtggtagt ctggtgtgct cccaagtttt        60
     tgtggcacca tttgcctttg gcgtgatctt gcacgccgtc ctcatttagt ttatacggtg       120
     atctgctttg cacgtgcatt cagatcacaa agtacaagta aaaagatgct ggagcagcag       180
     caccgccacc acagatcccc acactcctct ctcagattcc gcctctacag gcaactcaaa       240
     attgctctcg tcctctggac aaataattat tctttggccc acggccgtta atgttctatt       300
     aaatttgaaa ctgtaaataa agttaaatcg ttcttgtgtc tagaataact actgtgtcac       360
     tgcatcaaac tgattctgtc atctaatcca gtgaaacgaa cctcttttaa aacgcagtca       420
     gataatttgg gtagaactag tgtgtggtga ccacaactgc actgatcatc ataattttgc       480
     acagttcatc tttaaaatag gcccattatt ctaca                                  515
//
ID   BEL-22_SpEx-I repbase;    DNA;    INV; 5626 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5626
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6902-6902 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..5592
FT                 /product="BEL-22_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MFHTPKNMVNTRRTAKKDEEQMEVQPSIQKVPALPTN
FT                 EEQQPNEDILRRAKTFLFLKSKPEGSVVKSEPPLTATQMIPSTSLQVPKAK
FT                 SQRSSSSSVIARKKRLELEAAQAKAKIEIDLIEKQLAANLAEIDDECSVQS
FT                 DHTNKDVEEWLERSHRELEAEPVRDRGQMKDVRCSPAAQNAGTNDGTVHLL
FT                 ASALRDFAAASTSNNFNTNLLSRICTPKDLPLFSGDPMEWLHFKQAYEESS
FT                 KVCNFKDNENLWRLRKCLKGAAREAVSALLISATSPETVMSTLELQFGNPD
FT                 IILSRILLDIKKLQPVSQDYHKDIVPFSIKVRNCVAAVKVIGQDEYLNGIS
FT                 ITTSILSKLPPILISKWADYSYAWTQQGKRPTWFDISEFLNQEATKVSSLA
FT                 LLNKKKYTEGTVLFNKNIDNNEKCQFCRITKHKLYECKKFRKALRKDRWSF
FT                 VKRNRLCYKCIDAKHDRATCPAAACDVDSCGQAHHKLLHYNSRETVNSDGQ
FT                 CVSSNPESSLIVPESETIAHIKNSECKVLLKVVPVRLHGPNGIFTTSALLD
FT                 DGSTISLISASLAARAGLRGRRESLQVRGAWDNSSLVCDTDVISVCLANCN
FT                 GEKFNISVRSMQNFSLPMQNYNVIDFNNYTHLCNMKNKFVLTNTKPEILIG
FT                 QDNYNLLLPLEIKVGKCNEPCATRTPLGWCIHGLVPNSLSTRAYHSALHVT
FT                 TVHLGSADTSLEDLHEMVRKSFTIESMGISGKPRQNSDDLRALEHLEQTAK
FT                 LIDGRWHVGIPWKDVNSAMPDSECTALSRLHNLEKKMACNEQYAQRYRERI
FT                 MHLLDNDFATEILDTRKTNKTWYLPHFGVDNPNKQKLRLVFDAAAKTRGLS
FT                 LNDYILTGPDLLSSILGIMLRFREHEIAVVADIKDMFLRVKIQQADQDALR
FT                 FLWRDSPNEPVRTYKMTSLIFGANCAPFIAQFIKNKNAEKYELSNPLAVQA
FT                 IREQHYMDDYIDSQPDDQICLSLARDVIHIHRQGGFEIRNWLSNSAVVLNS
FT                 LPKDLLAPTASTVGIGARHEGERALGIIWYPGDDTLGFVTSFQRISKEIIN
FT                 GIRTPTKRELLKVIMSLFDVHGFLAPFTINGKILLQETWKSNVGWDEHITD
FT                 DICKKWFKWLKLINLIKNIRIPRCYKRVNASKLCNNITEENNRYDSPLISA
FT                 SFNNLPARTPVLHETGYNCLQLHIFCDASIQAMCAVAYWRWLDNNKQIHVC
FT                 FVASKCRVASVKPVTVPRLELQAAIIAARLANTLQSAHRIKPANRYFWCDS
FT                 TTVLQWIRNNSRSYKPYVAHRLGEIDELTQVNEWRYVPTFWNVADKATREN
FT                 FDVLQLNDEWFNGPSFLCESESSWPTSTVIPCDAGEECDKEVVTNILHGNY
FT                 LPDHAAIPDPMRFSSWIRLLRATAMVLKFIYRCQRKEIDDCSLMKRAETLL
FT                 LRYAQQVSFGNDIKLIKGSKCLDKNSRLRTLTPFLDVQDILRVGGRIDAAA
FT                 DVSFDVKHPAILDGKCQIAKLIVKYYHVKAGHGNQEMVVNNLKQKYWLIKL
FT                 RPTVKEITSRCMLCRLRKLKPQMPRMGDLPAARVAHHQRPFTHCGIDLFGP
FT                 MEVTIGRRREKRYGVLFTCLTVRAIHLETVSSLSTDSLIMALRRMASRRGW
FT                 PAYLYSDNGTNLRGACTELRKSAAELDETSLQVAVGIHGTRWTFIPPASPH
FT                 WGGAWERLIRSVKVALKVVLNERAPREEVLNTLLAEVEVMVNGRPLSHVSV
FT                 DANSKESLTPNHFLIGASSNSPHMGSFDDSDLFRRRQWRIAQRLADMFWRR
FT                 WVTEVLPEMIPRQRWTQDQARPIQLGDLVFIVDPNAPRNVWPRGIIDKVFP
FT                 GKDGRVRVVQVRTQVGTVKRSVARVARIPMDN"
XX
SQ   Sequence 5626 BP; 1713 A; 1154 C; 1314 G; 1445 T; 0 other;
     gctggtcact tcgaaccgga tctggtacaa atgttccaca caccaaagaa tatggtgaac        60
     actcgaagaa ccgcaaagaa ggacgaggag caaatggagg ttcaaccctc aatccaaaag       120
     gttccagcat tgccaacaaa tgaggagcaa caacccaatg aagatatttt acgacgggct       180
     aaaacttttc tttttcttaa aagtaaacct gaaggtagtg tggtaaaatc cgaaccacct       240
     ctaacggcca cccaaatgat tccttcaacg tctcttcaag tccccaaagc caaatcacag       300
     agatcatcat cttcgtcggt gattgctagg aaaaaaaggc tggaactgga agcagcacaa       360
     gcaaaagcga agatcgagat agatttaatc gaaaaacaat tggctgcaaa cttagcggag       420
     atcgacgacg agtgtagtgt gcaatcagat cacactaaca aggatgtaga agagtggttg       480
     gagcgcagcc accgagaact ggaagcagag cccgtccgcg acaggggtca aatgaaggac       540
     gtgcgctgct cgccggccgc acagaatgcc ggcactaatg atggtacagt tcaccttttg       600
     gccagcgcac tgagggattt cgccgccgct tctaccagca ataacttcaa tacaaacctg       660
     ttaagtagaa tttgtacacc gaaagatttg ccattatttt ctggtgaccc gatggagtgg       720
     ctccacttta aacaggcgta tgaagagtca tctaaagtgt gtaatttcaa agacaatgaa       780
     aacttgtggc gcctaaggaa atgtttgaag ggagcagctc gcgaagctgt ctcggcccta       840
     ttaataagtg cgacctcgcc tgagacagtt atgtctaccc tcgagctgca gttcggtaat       900
     ccagatatca tattgtcacg tatattgcta gacatcaaga agcttcagcc agtgtcgcaa       960
     gattatcata aggatatcgt acccttttca attaaagtgc gaaattgtgt cgccgctgtc      1020
     aaagtaattg gtcaagatga atatctgaac ggaataagca taactacaag catactttca      1080
     aagttacctc ctattttaat ttcgaagtgg gctgattaca gttatgcatg gacccagcaa      1140
     ggtaagcgac cgacatggtt cgatatttcg gaatttctaa atcaggaagc tactaaagta      1200
     tcatcattag ccttattgaa caagaagaaa tacacagagg gtacagtgtt gtttaataaa      1260
     aacattgata ataatgaaaa atgtcagttc tgccgcataa ccaaacataa attatatgaa      1320
     tgtaaaaaat tccgcaaagc actacggaag gatcgttgga gtttcgtcaa acgaaaccgg      1380
     ttatgctaca aatgcataga tgcaaaacat gatcgtgcca cttgtccggc ggcggcgtgt      1440
     gacgtcgata gctgtggaca ggcgcaccat aagttattac attataattc gcgagaaact      1500
     gtgaatagtg acggacaatg tgttagtagt aatcccgaat cgtctttgat tgtacctgaa      1560
     agtgaaacaa tagcgcacat taaaaacagt gagtgcaaag tgttattaaa agtagtgccc      1620
     gtacgattac acggacctaa cggtattttt actactagtg ctttattaga tgacgggtct      1680
     acaatatccc ttatcagcgc ttcactcgcc gcccgggccg ggctgcgcgg gcgccgcgag      1740
     tcgctgcagg tgcgcggcgc ctgggacaac agctcgttgg tgtgcgacac cgacgtcatc      1800
     agtgtttgtt tagcgaactg taacggtgag aaatttaata tttctgttcg aagtatgcag      1860
     aactttagtc tacccatgca aaattataat gtcattgatt ttaataacta tacccactta      1920
     tgtaatatga aaaataagtt tgttttaact aatactaaac ctgaaatact gatcggtcag      1980
     gataattata acttgttatt accattagaa attaaggtcg gtaaatgtaa cgaaccttgt      2040
     gccactcgta ctccgctggg atggtgtatt cacggtctgg tacctaactc tctctcaacc      2100
     cgcgcgtatc actcagcact gcatgttact acggtacact tggggtcggc agacacttca      2160
     ttggaagacc tgcacgaaat ggtaagaaag tcatttacta tcgaatcaat gggcatctcc      2220
     gggaaacctc gccagaactc cgatgatctg cgcgccctgg aacacctgga acaaacggca      2280
     aaattgatcg atggtcgatg gcacgtaggt ataccatgga aggacgtcaa cagcgcgatg      2340
     ccggactcag agtgcactgc actgtctagg ctgcataatc tagaaaagaa aatggcatgt      2400
     aatgaacaat acgcacaaag ataccgggaa cgtattatgc atttattaga taacgatttt      2460
     gctaccgaga ttttggacac aaggaaaaca aataaaactt ggtacttacc gcactttgga      2520
     gtagataatc caaataaaca gaagttacgt ttagttttcg atgccgcggc taaaacgcgt      2580
     ggtttatcgc ttaatgatta tatccttact ggtcccgact tattaagttc gatattggga      2640
     ataatgttgc gttttcgtga acatgaaatc gccgtcgtag ccgacattaa agatatgttt      2700
     ttaagagtga agatccaaca agccgatcag gatgctctaa ggtttttgtg gcgcgatagt      2760
     cccaacgaac ctgtgaggac atataaaatg acgtcattga tatttggtgc caactgcgcg      2820
     ccattcattg ctcagtttat taaaaataaa aacgcagaaa aatatgaatt atcaaaccct      2880
     ctagcagtcc aagccatccg agagcagcat tacatggatg actatatcga tagtcaacca      2940
     gacgaccaga tatgcctttc actcgctcgt gatgttatac atatacatag acaaggggga      3000
     tttgaaattc gtaactggct gagtaatagc gcggtagtgc taaacagctt accaaaggat      3060
     ctgcttgcac ccacggcatc aacagtgggg ataggtgcgc gacatgaagg tgagcgcgct      3120
     ttaggtataa tatggtatcc cggcgacgac actttgggat tcgtcacttc gtttcaacgg      3180
     atatctaaag aaattataaa tggaataaga actcccacaa agcgggagtt gttaaaagta      3240
     ataatgtcat tgtttgatgt ccacggattc cttgcgccgt ttactataaa tggcaaaata      3300
     ttactacagg aaacctggaa atccaacgta ggttgggacg aacacataac ggatgatata      3360
     tgtaaaaagt ggtttaaatg gttaaaacta ataaacttaa taaaaaacat tagaatacca      3420
     agatgctata agcgagtaaa tgcatctaaa ttatgtaata atattacgga agaaaacaat      3480
     agatatgact caccattgat aagcgcttca ttcaataact tgcctgcgcg cacacctgtg      3540
     ttgcacgaaa ctggttataa ttgtttacag ctacacattt tttgtgatgc ttccatacag      3600
     gctatgtgtg cagtcgcata ttggcgatgg ttagataata acaaacaaat acacgtttgt      3660
     ttcgttgcaa gtaaatgtcg agttgcctcc gtaaaacctg tgacggtacc tagactggaa      3720
     ttacaggcag ctatcatagc tgctagatta gctaacacat tacagtccgc acatcgaata      3780
     aaaccagcta atagatactt ttggtgtgat tccacaacgg ttttgcagtg gattcgaaat      3840
     aactcgcgca gctacaaacc atacgtagcc caccgcttgg gtgaaattga tgagttaact      3900
     caagttaatg aatggagata tgtacctacg ttctggaatg ttgcagacaa agccacgcgg      3960
     gagaattttg atgtcttgca gttgaacgac gagtggttta atggaccttc ttttctgtgt      4020
     gagtcagaat cttcatggcc aacgagtaca gtcattccct gtgacgcagg ggaggagtgt      4080
     gataaggagg tagtcacaaa tatactgcac ggcaattact tacccgatca cgctgcaata      4140
     ccggatccga tgcgcttctc ttcttggata cgtttgctga gggctactgc gatggtgcta      4200
     aaatttatat ataggtgcca acgaaaggaa atagatgact gcagtcttat gaagcgcgcg      4260
     gaaactctac tcctgcgtta tgctcaacag gtatcgttcg gtaatgatat aaaattaatt      4320
     aaaggtagta aatgtttaga caaaaatagc aggttacgta ccttaacgcc tttcctggat      4380
     gtacaggata tactgcgtgt gggtggaagg atagatgccg ctgctgatgt atcctttgac      4440
     gtcaagcatc ctgcaattct agatggaaag tgtcaaatag ctaagttgat agtaaagtac      4500
     taccacgtga aggctggaca cggcaaccag gagatggtcg taaataacct gaaacaaaaa      4560
     tattggttaa taaaattgag acctacagtt aaagaaataa cttcaaggtg catgctatgt      4620
     agattaagaa aattgaaacc tcagatgccg agaatgggtg acttacctgc tgctagagta      4680
     gctcatcatc agcggccttt tacccattgt ggtatagatc tgtttggtcc aatggaagtc      4740
     acaataggaa ggcggagaga aaaacgctac ggagttttat ttacgtgtct cacagttcgt      4800
     gcgattcatt tggagacagt gtcctcgcta agtactgatt ctctgatcat ggcacttcgc      4860
     agaatggctt caagacgtgg atggcctgca tatctatact ccgataatgg gacaaattta      4920
     aggggtgctt gtacagagct gaggaagtcc gcagcagagc tcgacgagac atcgttgcag      4980
     gtagctgttg gcattcacgg cactcgttgg actttcatac cgccggccag tcctcactgg      5040
     ggtggggcgt gggaacgcct gatccgcagc gtcaaggtcg cactaaaagt ggtgctcaat      5100
     gagagagcgc caagagaaga ggtacttaac acgttacttg ctgaagtcga agttatggtg      5160
     aatggacgcc cgctaagtca tgtatctgtt gatgccaata gtaaagagtc attgacacca      5220
     aaccactttt taattggcgc ttcatcaaac tctcctcata tgggcagctt tgacgattcc      5280
     gatttgtttc gacgtcgtca atggcgtata gcccagcgac tagcagatat gttctggagg      5340
     agatgggtta ctgaggtgtt accggaaatg ataccgcgtc aacggtggac ccaagaccaa      5400
     gcgagaccca ttcagttggg agacttagtg ttcattgtcg accctaatgc tccacgtaac      5460
     gtgtggccgc gaggtattat tgacaaggtt ttccccggca aagacggcag agtgcgagtg      5520
     gtacaagtgc gaacgcaagt aggtactgtc aaaagatctg ttgctcgcgt cgctagaatt      5580
     ccaatggata attgagtgct gcagcagccg cactgggatg gggcta                     5626
//
ID   BEL-22_SpEx-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-22_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-239
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6930-6930 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 239 BP; 72 A; 42 C; 45 G; 80 T; 0 other;
     tgtaagcgac gcaaaatata tgtagatata atatgtatat agatttaagt aagggtactc        60
     gtaataaagt ttataaattt agttaagtca gtcgtccgct aaacgccgct gcgatcggca       120
     cgttttttac tctcgcccta caattatata gttttcgagt gtgtcaatat attgcaataa       180
     attcagtgtt ttgttcaaca aagctgtgtg gtttcattgc tgacgaccag acccctaca        239
//
ID   BEL-230_AA-I repbase;    DNA;    INV; 5268 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-230_AA_;
KW   BEL-230_AA-LTR; BEL-230_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5268
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 915-915 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4315-4899] - Integrase core
CC   'GGCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..5244
FT                 /product="BEL-230_AA-I_1p"
FT                 /translation="MDSLVRKRTALMGRLAGIRSRVSAMDPAMARSDDLDA
FT                 EMECLKEWWLDYRKLQEGILDLCEDDDLLEDIVKIGNKADQEHNSVKAMIT
FT                 QFQRVVQHREHPIVAASTSTVSQAPEPNATTVGLPELNLPKGILPTFSGDY
FT                 GEWTSFYDLFTSSVHNNPRLTDAQRLLYLKTYTSGAAAALLRHVKVEDRAY
FT                 QGALEALRKRFDRKDQIVSHQIQRYLDIPTTNVATAANLRRAYSTADDVVR
FT                 ALKASEREERDCWLIHLLLAKLDPETRQLWANKTSITDVSADPSTINDFLE
FT                 FLDQRAYTMESAHRPSSHVSGKVPPKTTSFRQSSSFIATNEPSTTNCVLCK
FT                 ERAHLLYMCRRFQNLQPSERLQLAYQHGLCLNCLREGHGRNSCTSIKCKKC
FT                 SQQHHTLLHDASHRFHERTHQTPVRTINNLSYNNAYTSVFLATAVVHIIDA
FT                 QGKPHAARALLDSASQACFITTALKSRLGLRSEQIDIPLQGISGLSTRITE
FT                 AVTIEMRSRTSKYRQQLQCAVLYKISDQIPQKPVDISEWDLPSSKQLADTG
FT                 FNIPSNVDLLIGAGVFYKLLGNERISLGETRPILQSTQLGWVVAGIYDTET
FT                 SANTSSTSSAALCFTTSLHQEETNELNNLVARFWELEDLQPTKHLTEEERL
FT                 CEEHYTQTTVRDSSGKYIVKLPFRKDPAVIGETAYSALHQFNAVSRKLTRN
FT                 PRLSELYHDYINEFIEAGYISKAEPASPPDRIIYLPHHGVLKEQSTTTKLR
FT                 VVFNASAKSSNGVSLNDLLMVGPVVQTNLYAILLNFRTPKIAITGDIERMY
FT                 LQINVSDADRHRIRMLWQERDQHLAEYTLNTVTFGMACAPFLATRTLKQLG
FT                 DDDGHLYPLAQEAMEDFYVDDCLTGASSIEEAIEKRRQITELLQRGGFSIR
FT                 KWATNEPAVLHDIPPPDRAVSLSQELDPDASLKTLGIRWHFGEDVFTFSST
FT                 CDKQKTVSCKRDILSTIAKIFDPLGLIGPAIIPAKAFMQELWQLQIDWSDP
FT                 LPESMKQRWQNYVENLHDVESIKIPRRCMNIDHPMRLLLHGYCDASNIAYG
FT                 AVLYLRAIDKAGNVSSRLLCSKSKVVPINRPTIPRLELCAAVLLARLIDTV
FT                 KAALRIPIHQTVAWSDSTTTLAWIAGSPTRWKTFVSNRVAEINASLPAVNW
FT                 RHIPGTDNPADLLSRGLTPSALESSQLWWEGPQWNDASCMESTGIQLTTEE
FT                 EAIVQKEMRKQDSVQTFVVITNEVIDQLMHRQSSFIKLVRIVAWVNRFIKN
FT                 CQRSDEAPSVGPLSVEEHETAKAILVRYSQQLAYPAEIQALAQQKELPKHS
FT                 KLLSLSPFLDDGLLRVGGRLARSKLAYDIKHPLILSPTSRLAQLIFHHEHL
FT                 QNHHLGAQSLLATVRRTYWIPHGRNLARNTVWKCVPCFKFNPKRGLQQQIM
FT                 GQLPPERTQPVPPFYISGVDYGGPITLVQRRGPGSPTTKGYIAMFVCFVTR
FT                 AVHIEAVSKLSSKAFLAALRRFVARRGHCGHLYSDNGTNFVGAAKEMIQWY
FT                 RTIQSPDHNNSVADMLARGGTQWHFIPPGSPHLGGLWEAAIKSAKHHLNIV
FT                 TRNVRLTFEEFSTLLTEIEGILNSRPISPASSDPNDVQPLTPGHFLIGRPL
FT                 TTPNQQQIIPSSDETYDIRFKYIHELRQHFWDRWSREYVPELQIKGKWHQS
FT                 TKGLQVGDLVLLRHQRLAPTQWALGRVVELKPSSDGHPRLVKLKVKDGELL
FT                 QSIHNLHKLPMN"
XX
SQ   Sequence 5268 BP; 1517 A; 1400 C; 1196 G; 1155 T; 0 other;
     ttaaaatttg gcgctgtaga caggatagta agtgaaagtg aagtagtgat ggatagccta        60
     gtgagaaaac gtaccgcctt gatgggccgt ctcgccggta tacggtcccg agtgagtgct       120
     atggatcccg ctatggcacg aagtgatgac ctagatgctg aaatggagtg cctgaaggaa       180
     tggtggctgg attataggaa gcttcaagaa ggaattttgg acctctgtga agacgacgac       240
     ttgctagagg acattgtcaa gattgggaat aaggcagatc aagagcacaa ttcggtgaaa       300
     gccatgatca cacagtttca gcgtgtggtt caacaccgag aacatccgat cgtcgcagcc       360
     tcgaccagta ctgtgagtca agcacccgaa ccaaacgcta caacggtcgg tctacccgag       420
     ttgaaccttc cgaaaggaat tctcccaaca ttctcgggag attacggaga atggacgtcg       480
     ttctacgatc tattcaccag ctcggtccat aacaatccac gattaactga cgcacaacga       540
     ctactgtacc tcaaaacgta tacctcaggt gcagcagcag cgttacttcg tcacgtcaag       600
     gttgaagacc gagcctacca aggggcgtta gaggcattga ggaaacgttt cgacagaaag       660
     gatcagatcg tgagtcacca gattcagcgt tatctcgaca tacccactac caacgtcgca       720
     acggccgcca atctccgacg agcgtacagt accgccgacg acgtagtacg agctctcaag       780
     gcgtctgaaa gagaggagag agactgttgg ctcatccatc tactactcgc caagctggac       840
     ccagaaacac gtcaactctg ggcgaacaag acttccatta ccgatgtatc agctgacccg       900
     tctaccatca acgacttttt ggaattcctc gatcaacgag cgtataccat ggaatcggct       960
     catcgaccat cgtcgcatgt gagtggcaag gttccaccga agacaacgtc atttcgtcaa      1020
     agctctagtt tcatcgcaac caacgagcca tcgacaacga attgtgtttt gtgcaaagag      1080
     cgagcacatc tattgtacat gtgcagaagg ttccaaaatc ttcaaccatc ggagagacta      1140
     cagttagcgt atcaacacgg cttgtgcctc aactgcctcc gagagggaca cggaaggaac      1200
     tcatgcacgt ccatcaaatg taaaaaatgc agccaacagc atcacaccct tcttcacgat      1260
     gccagccatc gtttccacga acggacgcac cagacacccg tccgtaccat caacaaccta      1320
     tcgtacaaca atgcgtacac atcggttttc cttgccactg cagtcgtaca catcatcgat      1380
     gcgcaaggga agccacatgc agcacgagct ctgctcgatt cagcttcgca agcttgtttc      1440
     atcaccacag ctttgaaatc acgcttgggc ttgcgaagtg aacaaatcga cataccacta      1500
     caaggcattt ctggactatc taccagaatc accgaagcag taacgatcga gatgcgatcc      1560
     cgcacaagca agtatcggca gcagttacaa tgtgcggtgc tctacaagat atcggatcag      1620
     atcccgcaaa aaccggtcga catctcggag tgggacttgc cctccagtaa acagctagca      1680
     gacactggat tcaacattcc cagcaacgta gatctactca ttggagcagg agttttctac      1740
     aaacttctcg gcaacgaaag aatatcgctt ggagagacgc ggcctattct gcaaagcaca      1800
     cagcttggat gggtcgtggc cggcatctac gacactgaaa cttcagcaaa tacttcatca      1860
     acttcttcag ccgcactttg tttcaccact tcgctacacc aggaagagac aaatgaattg      1920
     aacaatttgg tggcacgatt ctgggagttg gaagatctac aaccaacgaa acatctcacc      1980
     gaagaagaac gtctctgtga agaacactac acacaaacca ccgttcggga ttcatctgga      2040
     aaatacatcg tcaagcttcc gtttcgtaag gaccctgcgg tcatcggaga aactgcttac      2100
     tctgctttac accagttcaa cgcagtatca cgtaagctga cgagaaatcc aaggctaagc      2160
     gagttatatc acgactacat caacgagttc atcgaggctg gatacatatc caaagcagaa      2220
     ccagcaagtc caccggatcg catcatctat ctaccccacc acggagtatt gaaggaacag      2280
     agtaccacta ccaagttgcg ggtggtgttc aatgcatcag caaaatcctc gaacggcgtg      2340
     tccctcaacg atctcctcat ggtgggccct gttgttcaaa ccaatctcta cgcaattttg      2400
     ctgaacttcc gtacgccaaa aatagccatc actggggaca tcgagcgaat gtatcttcag      2460
     atcaacgtca gtgacgcaga caggcatcgc atcagaatgt tgtggcaaga gagggatcag      2520
     catctcgccg aatacactct gaacactgtg accttcggaa tggcttgcgc accgtttctg      2580
     gcaacacgaa cattgaagca actgggcgat gacgatggac acttgtatcc tttggctcag      2640
     gaagcaatgg aggactttta tgtcgacgac tgtctgactg gtgcatcatc cattgaagaa      2700
     gcaatcgaaa aacgtcgaca gatcactgaa ctcctgcaac gcggcggctt ttctattaga      2760
     aaatgggcaa ctaatgaacc agcagtactg catgacattc ccccacccga cagagcagtc      2820
     agcctgagtc aagagctcga tccagatgcc agtctcaaga cactaggcat ccgttggcac      2880
     tttggagaag atgtcttcac gttcagttca acctgcgaca agcaaaaaac ggtctcgtgc      2940
     aagcgagaca tattgtccac gattgccaag attttcgacc ctctggggct catcggaccg      3000
     gcgatcattc ctgcaaaggc attcatgcag gaactctggc aacttcaaat cgactggtca      3060
     gatcctttgc cagaatctat gaagcaacgg tggcaaaact acgtagaaaa tctccatgac      3120
     gtcgaaagca tcaaaattcc acgccgatgc atgaacatcg atcatccaat gagactactt      3180
     ctgcatggct actgcgacgc atcaaacatc gcatatggag cggtgctata tcttcgagcc      3240
     atcgacaagg caggaaacgt cagctctcgg ctgctatgct ccaaatctaa ggttgtacca      3300
     ataaacagac ctacgatccc tcgactagag ctttgcgcag ccgtgctact agcccgtctc      3360
     atcgataccg taaaggcagc cctgcgaatc ccaattcatc aaacggttgc ctggagtgat      3420
     tctacgacta cactggcctg gatagctggt agcccaacac gatggaagac ctttgtctca      3480
     aatcgcgtcg cagaaatcaa cgcttctctt cccgccgtga actggaggca tatcccagga      3540
     acggacaatc cagcggactt gctaagtcgt ggactaacac caagtgcctt agaatcgtct      3600
     caattatggt gggaaggacc ccaatggaat gacgcctcat gcatggaatc gacgggtata      3660
     caactaacga cagaggaaga agctattgtc caaaaggaaa tgaggaaaca agattcggtt      3720
     caaacctttg tcgtcatcac caatgaagtt atcgaccaac taatgcatcg tcagtcatcc      3780
     ttcatcaagc tagttcgcat tgtagcttgg gtaaatcgat tcatcaaaaa ctgccagcgt      3840
     tctgacgaag cacctagcgt tggaccgctt tccgtggaag agcacgaaac agcaaaggca      3900
     atactcgttc gatactctca acaattagca tacccagcgg agatacaagc cctagcacag      3960
     cagaaggagt taccaaaaca cagcaagctg ctttcgttat ctccattttt ggacgacggt      4020
     ctgctcaggg tgggcggtag gcttgcccga tcgaagttgg cgtacgacat caagcatccc      4080
     ttaattcttt caccgacaag tcgtctagct caactaattt tccaccacga gcatcttcaa      4140
     aaccatcatc ttggcgcaca atctctcttg gctacagtca gacgcaccta ctggatccca      4200
     catggtcgaa atcttgcgcg caacacagtg tggaaatgcg tgccttgctt caaattcaat      4260
     ccaaagcgtg gcctacaaca acaaataatg gggcagctac caccagaacg aacccaacct      4320
     gtgccaccct tctacatttc cggagtcgat tacggaggac cgatcacgct agtacaacga      4380
     cgaggaccag gatcaccaac cacaaaaggg tatattgcca tgttcgtttg tttcgtcact      4440
     cgagccgtcc atatcgaggc agtcagcaaa ctttcatcga aggctttctt ggcggcgtta      4500
     cgaaggtttg tcgctcggcg aggccattgt ggacatctat acagcgacaa cgggacaaac      4560
     ttcgtcggcg cagcgaagga gatgatccag tggtatcgca caatccaaag ccctgaccat      4620
     aacaactctg ttgccgatat gttagcacga ggaggaacac agtggcactt tatcccacct      4680
     ggttctccac atctgggtgg tctctgggag gccgccatca agtctgcaaa gcaccatttg      4740
     aacatcgtca ccagaaacgt ccggctaaca tttgaggaat ttagcactct cttgacagag      4800
     attgaaggta tcctaaactc acgtcccata tcaccagctt caagcgaccc aaacgatgtc      4860
     caaccattga ctcctggaca tttcttgatt ggacgaccat taaccacacc gaatcaacaa      4920
     caaatcattc caagttcaga cgaaacctac gacatacgct tcaaatatat ccacgaactg      4980
     aggcaacatt tctgggatcg ttggagtcgt gagtatgttc ctgagctaca aattaaggga      5040
     aaatggcatc agtcaaccaa ggggctacaa gttggtgact tagtcctgct tcgacatcag      5100
     cgattagcgc ccactcaatg ggcattggga agagtcgttg aacttaagcc ttcatcggat      5160
     ggccatcctc gactcgtcaa gctaaaggta aaggatggcg agctgctaca atcaatccac      5220
     aatctccaca aactaccgat gaattgactg cgcaattgat gggcggaa                   5268
//
ID   BEL-230_AA-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-230_AA_;
KW   BEL-230_AA-I; BEL-230_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-481
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 916-916 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 481 BP; 152 A; 112 C; 90 G; 125 T; 2 other;
     tgttgaggcc gccagcaagc tgccgggaag tttcgaccgg cagacgatca tgcctcatgc        60
     cggcagccca acaaacacac cacaacaatc aacacaacat actcaccatc ttttccacct       120
     ggatcgttct cgaacgtacc taaaatagaa gaaaacaatt agaactaatg aattcatact       180
     cacctttatg ctaatgatgc cactagaacc taccagaact attgtttttg ttttgcttga       240
     attgacaata tgctagaatg ttcgggcgct gctacacttt gcattcgaaw gcacgctaat       300
     aatacgtaag gcaacaatag tgtattcagc aaatggaaag ttctacacgc ttattgtcta       360
     atcgagtata aatatcaccc agttggcata ggtcaaatca gtttcgaata aaccgttgaa       420
     cagtgaaaat cggatcagca agcgttttwa tttatcctcc ggtgtggaag tcgcgttaac       480
     a                                                                       481
//
ID   BEL-231_AA-I repbase;    DNA;    INV; 5964 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-231_AA_;
KW   BEL-231_AA-LTR; BEL-231_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5964
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 917-917 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5024-5575] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..2224
FT                 /product="BEL-231_AA-I_1p"
FT                 /translation="MSANNTPGTPKENEEGGCVDCSRPKSYDNLVQCDQCD
FT                 SWWHMRCAGVTASIADRAWTCRMCLPLSVNTSTSSSSARIALRLKQIEEER
FT                 AIQQRAWEAEKRALEQERKAILEKYRLLEQHLDESRDNRSHRSHRSHVSQR
FT                 SKLQRVNQWVDDQKLDVAVGTTATVHENPSLKIGNGQLSRIAGNEPPAVFP
FT                 ITTMTSPNPNVSQQQIERNQQPTSGAIPKADSKTRGLIVDSVRFNEGNKIP
FT                 SVLPVLPPGKLATNSYHNKQVISQPVDHYQDVLAKLGSISLTPNVESPTRI
FT                 FSTEPQVEGQSSRYVSQPFPVGGNDEQYAPLANVNTNANHPQSSVPRAVLA
FT                 PEVPNNVPSPSQLAARQIMPRDLPLFTGDPADWPIFISAFTNTTAACGYSN
FT                 VENLARLQRCLRGAAYEAVRSRLLLPASVPQVLNTLQLLFGRPELLINVLL
FT                 EKVRTTPAPRAEKLETLIEFGMAVQSLCDHLEAAGQQAHLTNPHLLMELVD
FT                 KLPAHVKMEWASFMQRYPLVNLKNFGDFMNSIVILASKVTMYTGGMNRGGS
FT                 SENAKMKFKGSINAHFSESDEKLCYACNGRGHRVRDCDSFKNLTVDERWKI
FT                 AQTHELCRSCLYAHGRRSCRYANQCGINGCTFRHHPLLHSDRSNQPSRGAD
FT                 AESAGIHTHGMPNQALLFRIMPVTLYGPRKNVKTYAFLDDGSHLTLMDEGL
FT                 IDELGVSGKTRPLCLTWTGNVSRMEMNSQQLQLTV"
FT   CDS           4478..5962
FT                 /product="BEL-231_AA-I_2p"
FT                 /translation="MAYVHRFVNNLIRMRGGEPTTSGYLTQAELQQAETTL
FT                 IKLAQKEAFQSEMAILIHNRDLSIAEQTRLDTKSTLYNLTPYIDESGILRL
FT                 DGRIGAAMYASNDTKFPAILPKNHQITSLILDSYHRQFQHGNAETVVNEIR
FT                 QRYYVSRVRTLVRKISNGCPECKIRRAAPRIPRMAALPPARLATYARPFTY
FT                 VGLDFFGPLTVKIGRGSAKRWIALFTCLTIRAVHCEVVNSLSTDACIKAIR
FT                 RFVSRRGAPTEIYSDNGTNFQGTERVLMQQIQQGLAATITNTTTKWVFIPP
FT                 SSPHMGGAWERMVRSVKQAMNIAYHSGRKLDDESLLTFVAEAESIVNSRPL
FT                 TYLPLDSAESEALTPNHFLLGSSTGILQPVAEPTDSAAALRSTLNMINQQL
FT                 DCFWRRWIREMLPTLTKRTKWFREEKPVEVGDLVLVVNDGRRNDWIRGRVS
FT                 EVISGSDGRIRQAVVRTARGLLRRSVAKLAVLNIENGGKTGTGGQLYGGE"
XX
SQ   Sequence 5964 BP; 1674 A; 1361 C; 1518 G; 1407 T; 4 other;
     caactttaaa acgatcgcga tgagtgcgaa taatacacca ggaactccga aggagaacga        60
     agaggggggc tgcgttgatt gctcgcgccc caaatcttat gacaacttag tccaatgcga       120
     ccagtgcgac agctggtggc atatgcgttg tgcgggagtg accgcatcga tagccgatcg       180
     agcatggacg tgtcgaatgt gtttaccgtt gagcgtaaat acttcaacca gcagcagctc       240
     ggcccgaatt gccctgcgat taaagcagat agaggaagaa cgcgcgatac agcagcgcgc       300
     gtgggaagct gagaaaagag ctctggaaca agagagaaaa gcgattctgg agaagtaccg       360
     gttgttggag caacacttag atgagagtag agacaacaga agccaccgca gccatcgtag       420
     ccatgtgagc caacgctcca aattacagcg tgtgaatcaa tgggtggacg accaaaagtt       480
     ggacgttgcc gtcggtacaa ccgcaaccgt gcacgaaaac ccatctctga agattggaaa       540
     tggtcagctt agtcggatcg cggggaatga accaccggcg gtttttccca ttactactat       600
     gacgtccccg aatcccaacg ttagccagca gcagatcgag agaaatcaac aaccaacgtc       660
     tggtgcgatt ccgaaagctg attcgaaaac tcgaggtctc atcgttgata gtgtaaggtt       720
     taatgaaggt aacaaaattc cctcagtact ccccgtactg ccaccaggta agttggctac       780
     caactcttac cataataagc aagttatttc tcagccagtt gatcattatc aagatgtgct       840
     tgcaaagcta ggctcaataa gtttgacgcc taatgtagaa agtccaacta gaatctttag       900
     cactgagccc caagtagagg gccagagctc acgttacgtt tcccaacctt tcccagtagg       960
     gggaaacgat gaacaatatg ctcctttagc caatgtcaat acaaatgcta accatccgca      1020
     gtcaagtgtc cctcgcgctg tcttggcacc cgaagtgcct aacaatgtcc catctccctc      1080
     gcagttagcc gcacgtcaaa tcatgcctcg cgatctaccc ctcttcaccg gtgaccccgc      1140
     ggactggccg atctttatta gtgctttcac caacacaact gccgcgtgtg gttattcaaa      1200
     cgtggaaaat ctagcgagat tgcaaaggtg tctaagaggt gcagcctatg aagccgtccg      1260
     cagtagacta ctactacccg catctgtgcc ccaggtgctg aacacgttgc agctcttatt      1320
     tggaagaccg gagctgctga taaatgttct gttagaaaag gtacgtacaa caccggcgcc      1380
     tcgagcagaa aaactggaaa cactcatcga gtttggaatg gccgttcaga gtttgtgtga      1440
     tcaccttgaa gcagcaggcc aacaggctca tttaacaaac cctcatctac taatggaatt      1500
     ggtggataag ttgcccgctc atgtgaaaat ggaatgggct agtttcatgc agagatatcc      1560
     gttagtgaat ctcaaaaact ttggagattt tatgaacagc attgtgatct tagctagtaa      1620
     ggtgaccatg tataccggcg gaatgaatag aggtggctcg tcggaaaacg cgaaaatgaa      1680
     gttcaaaggt tcaatcaacg cacacttctc agaaagtgac gaaaaactgt gttatgcctg      1740
     taatggccga gggcatcgag tacgtgattg cgattctttc aaaaacctca ctgtcgatga      1800
     acgttggaaa atcgcacaga cccatgaact ctgtagaagc tgtttatacg cacacggtag      1860
     aagaagctgt cgatatgcta atcaatgtgg aattaacgga tgtacgttcc gtcaccatcc      1920
     gctactccac tctgaccgaa gcaatcaacc ctcaagagga gcagatgctg agtctgctgg      1980
     aatccacacg cacggaatgc cgaatcaagc ccttttgttt cgtattatgc ctgtaacact      2040
     atacgggcct cgaaagaacg tgaaaactta cgccttcctt gatgatggat cacatctaac      2100
     gctgatggac gagggactaa ttgatgagct gggagttagt ggcaaaacga ggcccctctg      2160
     cttgacctgg acgggcaacg tctctcgtat ggagatgaac tcgcaacagc tacaattaac      2220
     ggtgkcaggt gttgacgacc gacggcgcct gaagctggat gatattcgca ccgtcaagaa      2280
     gctcgccttg ccgggacaaa ctctacgaat caaggacttg gcaggcaagt tccatcacct      2340
     tcaaggtctg ccggttgctg aatatgaaaa cgccgtcccc cgcttgctga ttggagtcaa      2400
     taatttgcat ctcaccgttc cattgagtgt gaaggagggg aaaatcaacg agccaatagc      2460
     ggtgaaaact cgccttggct ggagcgtgta tggaggaaga agcagcctac ccgcgaattc      2520
     cttgaacctt cacgtctgtg gatgtactag tgaccgtaac ctgcatgatt tagtaaagga      2580
     ctacttttcg ttggaggatg ttggaaccaa accggtgaat ggactactat cagcagatga      2640
     tcgcagagca caacatatat tgcaacagtc caccatgcga gtcgggaata tatacgagac      2700
     tgctttgctg tggagatttg acgacgtcga gttgccagac agctacgcta tggccctgcg      2760
     cagactcgaa tgcctagagc gtcgaatgga caggaatcct cgcctaaagg agaatctggt      2820
     ccgacaaata gatgaatatc aagaaaaggg atatgcgcat cgggccagtg aggaggaatt      2880
     atcagctgcc aatatgaaat gaatttggta tctaccatta ggagctgtgg tgawtccgaa      2940
     aaaaccggaa aaaattcgtc ttatatggga tgcagctgct acggttgatg gcgtatccct      3000
     caattcgcta cttctcaagg gcccggatca attgacgtcc ttatctgctg tcttggtacg      3060
     ttttcgacag tacgccatag ctgtctcagc tgatataaag gaaatgttcc accaaatacg      3120
     aattcgggaa gcagatcgtc attcccagcg ttttctgtgg cgcactgatc catcgaacga      3180
     gccggatatt tttctaatgg acgtagcaac gtttgggtca acgtgttcgc cagcgtcggc      3240
     ccaatatgtc aagaaccaaa atgcagctga attctccgac gtgtacccaa aagctgttgc      3300
     agaaataacc gacaaccact acgtggatga ttatttagca agttttgaaa ccgtagaaga      3360
     agcaactgaa gtttctcaac aagttaagga aatacacgaa aggggtggtt ttatgttgcg      3420
     gcactggcaa tctaatagct ctgcagtagt ccatagcttg ggcgaaagca gcaaggctat      3480
     caacaaacac ttgtttctgg acaaaagcac tcaatacgaa cgagttcttg gtatgctgtg      3540
     gcttacgaac gaagaccagc tggggttttc tacgcaactt aaagaagatg ttcagcagat      3600
     aatagaaaac gaatgttacc caacgaagcg acagctcttg cgttgtctaa tgagtttttt      3660
     tgaccctctc ggcatattaa gcttcatcct agttcatggc aagattttgc tgcaagatgt      3720
     ttggcgtgtt gggacgcaat gggatsaaga gattcaggta gagcaccagg agttctggcg      3780
     aagatgggct gctctgctta agcaaataca tacagtcaaa attcaacgat gttatttccc      3840
     ggatgctacc gttcaatact accggcaact acaattgcac gtcttcgtgg atgcawgcga      3900
     aagtgcatac gctgccgtcg cttatttccg tatagttgac ccaagtggag tgatacgctg      3960
     tgctttggtg gcgggaaaaa ctaaggttgc cccgcttaaa ccactgtcaa taccacgctt      4020
     agaacttcaa gcagccgtgc ttggatctag actactacga tttgttcttg agtctcacaa      4080
     cgtaatcgtg gtaaaacgct acctttggtc cgactcgtcg acagttttgg cctggctaaa      4140
     ggcagatcct cgcaagtaca agcagtacgt agcctgcagg gttggagaaa tcttgtcggt      4200
     aacggaggtg aatgagtggc agtgggttcc ctcgaagcag aacccggcgg acctagcgac      4260
     gaaatgggga gatggtccga ctgctgatat tgaaggaata tggtttacgg gtcctgcgtt      4320
     tctacaacaa ccagagccgg gttggccaaa acataggttg ttacaacagt ccaccgtaga      4380
     agagctgcga gtttgtaacg ttcattgtga aactattgat gtgccactgg taatcgattg      4440
     gaatcggttt tccaagtggg aacgactaca cagggctatg gcctatgtac acagatttgt      4500
     gaataatttg ataagaatgc gcggtggtga accaacaact agtggctacc ttactcaagc      4560
     agaactgcaa caggctgaaa caactttgat caagttggct cagaaagaag cttttcaatc      4620
     cgaaatggcg atccttatcc acaatcgtga tttgtcaata gccgagcaga ccaggttgga      4680
     cacaaaaagt actttgtaca acttgacgcc ctacatcgat gagtctggaa tccttcgact      4740
     ggatgggagg attggcgctg caatgtatgc gagtaatgat acaaagtttc cggcaatact      4800
     accaaaaaat caccaaatta cgagtttgat tttggattcg tatcatcgac agtttcagca      4860
     tggcaatgct gagacagtcg tcaacgaaat aagacaacga tattatgtat ctcgggttcg      4920
     gacattggtt cggaagatta gcaatggatg cccagaatgc aaaatacgga gagcagctcc      4980
     tcgtataccc cgcatggctg cactccctcc agctcgtctg gcgacgtatg ctagaccgtt      5040
     cacctatgta gggttggact tctttggccc tttgacggtg aagataggac gaggaagcgc      5100
     taaaagatgg atagcgcttt tcacctgcct tacgattcga gcagtacatt gtgaggtggt      5160
     aaacagtctc tctacagatg cctgtatcaa ggctattcgt cggtttgtga gtcgacgtgg      5220
     agcgcccact gaaatttatt cggataacgg gaccaacttt cagggaacgg agcgagtatt      5280
     gatgcagcaa atccaacagg gcctagcggc aacaattacc aacaccacga ctaaatgggt      5340
     tttcattcct ccatcgtccc cacacatggg aggcgcctgg gaacgcatgg tacgctcggt      5400
     gaaacaggcg atgaatattg cgtatcattc tggtcgaaag ttggatgacg aatccctgtt      5460
     aacgtttgtt gccgaagccg agagcatcgt caatagccgc ccccttacct acctacccct      5520
     ggactcggcg gaaagcgaag ctttaactcc caaccacttc ctgttgggaa gctcaacggg      5580
     aattctacag ccagtcgcgg agcctacgga tagtgcagct gccctgagaa gtacgcttaa      5640
     catgatcaac caacaactgg attgtttctg gagacgatgg attagagaaa tgttaccaac      5700
     attaacgaag agaacaaagt ggttccgcga agaaaagcct gtagaagttg gagatttggt      5760
     gctggttgtg aacgatggaa gaaggaacga ctggataagg ggacgagtat cggaagtcat      5820
     ctctgggagt gacgggcgaa tccgtcaagc cgttgtaaga accgcgaggg gattactgcg      5880
     tcgatcggta gcaaagttgg ctgtattgaa cattgaaaat ggtggtaaaa ctgggaccgg      5940
     tggccagttg tacggggggg agga                                             5964
//
ID   BEL-231_AA-LTR repbase;    DNA;    INV; 630 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-231_AA_;
KW   BEL-231_AA-I; BEL-231_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-630
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 918-918 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 630 BP; 230 A; 112 C; 110 G; 178 T; 0 other;
     tgttgccgct gggaacactt ccacggctat gtattccgca gagttagcct caccggagta        60
     aacgtcattc cgacagatca atctgtcaac tagcttagag gatctaatga atagattcag       120
     agtcactgtg gatgagtgcg cagatttgcc attccgtgaa atattaacag aattattata       180
     aaagttggat tgttattcct gaactctttg aattaaaact aaaagtagtg gtttgaaaca       240
     gtaggtgaaa tgttaaaact taaaactata aaacagttaa aattactttt tattacagaa       300
     cacaagtagt tacaaggcta aaacttaaag ctagagaggt taaaatccta caaggtacat       360
     taaaagtact taataattaa tcatgcaaca tgcactagag tactaattac gttatcaatt       420
     acagttgaat tgcgattata attattagag gcaaagcaga acagttattc tgtagttaaa       480
     acaccgatcg tgtaagtagc atacacaaga caaagtaatc taaactaata aataaaattt       540
     gcagtttaaa gcatcgccaa actacacaaa acagtgtttg tgctgctgaa aacctggtga       600
     ccagctcccc atttctgctc cctgccaaca                                        630
//
ID   BEL-232_AA-I repbase;    DNA;    INV; 5876 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-232_AA_;
KW   BEL-232_AA-LTR; BEL-232_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5876
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 919-919 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4637-5209] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(806..2203,2207..5602)
FT                 /product="BEL-232_AA-I_1p"
FT                 /translation="MEWMIFETEFKTSTEEFRLTDRDNIRRLNKALQGKAR
FT                 KTVESLLSSPDNVAQIMRMLKSNFGRTEWVVVNRLEALRNLESVKEGNIES
FT                 FRTFYNAVVGTMVAMQNAKADNYLLNPELISTLAEKLPGFSKQMWIRHKAA
FT                 LMKEDTVVDFNTFARWLEDEMDNQLASLNPSFGPRKVNYLAKPKPVVFNVN
FT                 SRDEETPKKCPLCSVGSHFSLDKCEQFRGLSVAQRRTTARSCKVCYICLKS
FT                 DHARRNCKSSKKCSVCGKNHHELVHSDESPRSFPPSMPNVCNVNGKNANTL
FT                 LRVGKVRIKGPNCVEEVFALFDEGSSLSMMDATVAAKIGLQGPTSSVNYRW
FT                 TNGISHKEEDSMMLSFDISGPAVQAKWYRANYIRSVQNLDLPPMNFDIEKV
FT                 RQLYPMLDEDKLAAVQGARPCMLIGSNNAGLIVPLKTIQYSLHGLQLTRCH
FT                 LGWTVHGLIEPSDTASFDNHALCAEDDDVELTDLVKQIYKVEDFGITGQSP
FT                 KMSDEDQRAIDIMNRTITRRGERFEVGQIYKYNNFSFPDSKPQALRRLQII
FT                 EKKMDSDPDFAEKYCSKIQDYINKGYARKLESDELTETPNTWYLPHFSVES
FT                 AGKFRLVMDAKAKSHGFSLNDLLLKGPDLVPALIAILMRARKKKIGFVADI
FT                 KEMFHQILIRRMDQDSQRFFFRGMDRSEPPSVYIMMVMIFGAVSSPSMAQF
FT                 IKNFNAKEMEEEYPGVERAVIDQHYVDDYFDCADTDEEAIELVQRVVETHD
FT                 HGGFQLVKFSSNSEAFLDSLDPALVADRVGSRTRVLGIDWDLQTDELVFSL
FT                 EFPKLIEKFRTGESVPTKRQLLKFMMGIFDPLGFLSPITIHLKIIFQELWR
FT                 LQSGWDDEIPDGLVPRWVEWLNETARLKEVRLPRYYFPEIPSFADAEFHAF
FT                 CDASDKAFACVIYMVHRHKGTSHVALVYAKSRVAPLKSSTVPRLELQGCVL
FT                 ASQMMKTLQDEMKIEVTKLFFWTDSKICLSWLKTSQKLTAYVGSRIMKIKE
FT                 NGHSVDLWHWVPSQLNVADLGTKSSKFSNMQEWMKGPDFLLHVSTRWPIDG
FT                 PLELTPAELVNFHSELTVDATADSLCCTVSEEYPIDLPDIERFSDFNRLIR
FT                 STAYYLRMKKILALPKNEKPKRLFITVHDMTDARNAWYRKVQSEVFGDELR
FT                 SLKQTGYVKNSSRLKTYSPFIHNGIVRMRGRVQDNSKPFDVNNPVILPDNH
FT                 PFSMLLIRMYHIVNAHQGLETIVNNIKERHRILKIRSQVKKYTASCIKCRE
FT                 LRALPTVPQMGNLPPERTTPFAFPFTNTGIDYFGPLVVKVGRRLEKRWVVL
FT                 FTCLTSRAIHLEVVPSLDTNSCIMAIRCFMSIRGLPQCIMTDNGTNFTGAD
FT                 QELKRLVKTLDQPQIEDSMSVRGVQWKFIPPGAPHFGGCWERLVRSVKNAL
FT                 RAMLQERHPTDLVLRTTLCEVMNTVNNRPLTHVSSDPLDAEPLTPNMLLLG
FT                 RNDSIQFDHDFDERDLDCRAAYKNAQIYADRFWRKWLSSYRPELIRSRKWP
FT                 DNRNYHEYHVGDFVMIVDENLHRGCWPKGVVEKIYKGPDGKIRTVSVKTSK
FT                 SSFTRPVSKIVLLQANISFPGSENVANTGSN"
XX
SQ   Sequence 5876 BP; 1695 A; 1252 C; 1429 G; 1497 T; 3 other;
     ttggtccttc gaataccaaa cgccagttta tatggcacaa cagttgcgcc gctctagaag        60
     agaaactaga ggcgtagtac caaagcgact agaaaattac tttgttcaac ttccacatca       120
     accaaccatg tttcgtactc ctgtaaatga acagcagcag aacaaatcaa tccagcgaac       180
     tgcagamcat gtctcagccc cgatcggaaa tgacgcggag aacgatcctg tttctggttc       240
     tcgcatctcg aagggtgctg cccactctga aaggcgttca aagaaaagcc tatcttctcg       300
     tatcagcgaa gctgacagcc aactgaaggc tcttttgttg gaagagcaga tcgaggagga       360
     tgaactgaag gcgtctatcg aacgagacaa aattctggct gagaaacgat tagctgcgct       420
     ccagatagaa caagacctgg cgttgaagac ggaagaaaga aaagcagagt tcctcaagcg       480
     aaagcgtgag cgtgaactta agaaggaaga acttaagact ggttcaagtt acggctcgag       540
     tgtctgcagc agcagaggta gcagctcgag tgcgtacacc agtgtatctc gacgtgtcac       600
     caaatggctc accgagtcaa aaaccgtgga agcaagcaac acgaacaatc tggagtcaaa       660
     tcgcataatt cgcccatcgt cccgcgagcc tgcagcgaat gatgtacctg ttcccgaacc       720
     tggcgtgaat gcaatcctgt acgaagcatt caaggcactg caaggaagaa acgtcaagga       780
     cttgccgtcg ttttctggtg acatcatgga gtggatgatt ttcgaaactg aattcaaaac       840
     gtccactgag gaattccgtc taacagatcg ggacaatatc aggcgactga ataaagcgtt       900
     acaaggtaag gcacgcaaaa ctgtggaatc gctgttgtct tcccctgaca acgtcgctca       960
     gatcatgagg atgctgaaat cgaactttgg acgcactgaa tgggttgtgg tcaatcgatt      1020
     ggaagcactg cgaaatttag agagcgtcaa ggaaggtaac atcgaatcat ttaggacttt      1080
     ctacaatgct gtagtaggta ccatggtcgc gatgcagaac gccaaggcgg ataattatct      1140
     gctcaacccc gaactcattt caacccttgc tgaaaaactg cctggtttca gtaagcaaat      1200
     gtggattcgc cataaggcag cattgatgaa ggaagatacc gtggtggatt tcaacacttt      1260
     cgctcgttgg ttggaggatg agatggacaa tcagttggcc agtttgaatc catcgttcgg      1320
     tcccaggaaa gtgaactacc tagcgaagcc aaaaccggtt gtattcaatg tgaacagccg      1380
     ggatgaggaa acaccgaaga agtgtccact gtgttcggta ggttcccact tcagtttgga      1440
     caaatgcgag caatttcggg gactttctgt agctcaacgt agaaccaccg cccgatcgtg      1500
     caaagtgtgc tacatttgct tgaaatcgga tcacgccaga agaaactgta aatcttcaaa      1560
     gaagtgttca gtttgtggta aaaatcatca cgaattggta cacagcgatg agtcacctag      1620
     aagcttcccg cctagtatgc cgaatgtgtg caacgtgaat ggtaaaaacg cgaacacatt      1680
     acttcgtgtt ggaaaggtga ggatcaaagg tccaaattgc gtcgaagaag tcttcgcgct      1740
     atttgatgaa ggttcatctt tgtcaatgat ggacgctacc gttgctgcga agattggact      1800
     tcaagggcca acgtcgtctg tgaattatcg ttggacgaac ggtatatcac ataaggaaga      1860
     agattcgatg atgctctcat tcgatatctc tggtcctgca gttcaagcaa aatggtacag      1920
     agcaaattac attcgttctg tgcaaaatct cgacctacca ccaatgaatt tcgacatcga      1980
     gaaggtgagg cagctgtacc caatgcttga tgaagacaag ctagctgctg tgcaaggtgc      2040
     tcgtccctgt atgctgatag gctcgaacaa cgcaggtttg attgtaccac tgaaaacaat      2100
     tcaatactca ctgcatggtc tacaactaac tcgctgccac ctgggttgga cggttcatgg      2160
     cttgatcgaa ccaagcgata ctgcatcatt cgacaatcac gctttwttat gtgctgaaga      2220
     tgacgacgtc gagctgacgg atctggtgaa acagatttac aaggtagaag attttggaat      2280
     caccggacag tctccaaaaa tgtctgacga ggatcaacgt gccatcgata ttatgaaccg      2340
     taccatcaca cgaaggggag agcgcttcga agtaggacaa atctacaagt acaacaactt      2400
     ttcgttcccg gacagcaagc ctcaagcgtt aaggcgacta cagattatcg agaagaagat      2460
     ggattctgac cccgatttcg ccgagaagta ttgcagcaaa attcaagatt acatcaataa      2520
     aggatatgca cggaaactgg agtctgatga actcactgaa acaccgaaca catggtactt      2580
     gccccacttc agcgtggaga gcgctggtaa attccgcttg gtcatggatg cgaaggccaa      2640
     atcgcatggt ttttctctca atgatttgtt gttgaaaggt cctgacctcg tacctgcctt      2700
     gattgcgatc ctgatgcgtg ctaggaagaa gaagattggc tttgtggcgg acatcaaaga      2760
     gatgttccac caaatcctca tccgtagaat ggaccaggac tctcaacgat tcttttttcg      2820
     tggcatggat cgctctgaac ctcctagtgt gtacatcatg atggtgatga tcttcggtgc      2880
     tgtgtcatct ccctctatgg cacaattcat caagaatttc aacgcgaagg aaatggaaga      2940
     ggagtatcct ggtgtggaac gcgccgtgat agatcaacat tacgttgatg actattttga      3000
     ttgtgcggac accgatgaag aggccatcga actggtacag cgtgtggtcg agacccatga      3060
     tcatggcgga tttcaattag tcaagttttc atcgaactct gaagcttttt tggattctct      3120
     cgatcctgca ttggttgctg atcgagtcgg aagcagaacc cgtgtgcttg gtatcgactg      3180
     ggaccttcag accgacgaac tggtgttttc cttggagttt ccgaaattga ttgaaaagtt      3240
     ccgaaccggt gaaagtgtgc ctacaaaacg acaactcttg aagttcatga tgggcatatt      3300
     tgatccacta ggtttcctga gtcccatcac catacacctg aagatcattt ttcaagaact      3360
     gtggcgattg caatccggct gggatgacga gattccagat ggtttggttc cgagatgggt      3420
     agagtggtta aatgaaactg ctaggctgaa agaagttcga ttgccgagat actattttcc      3480
     ggagattccg tcgttcgctg atgctgagtt ccatgccttt tgtgacgcga gtgacaaggc      3540
     tttcgcttgt gtaatttata tggttcatcg gcataagggt acgtcacatg ttgccttggt      3600
     ttatgctaag tcaagggtcg ctccactgaa gtcttcaact gtgccacgtc tggaacttca      3660
     aggttgtgtg cttgctagtc agatgatgaa gacgcttcaa gacgagatga aaatagaggt      3720
     gacgaaattg ttcttctgga ctgactccaa aatttgcctg agttggttga agacgagtca      3780
     gaagcttacg gcgtatgtcg gatctcgcat tatgaagatc aaggagaacg gtcacagcgt      3840
     tgatttgtgg cattgggtac catcacagtt gaacgttgcc gatcttggaa caaagtcgag      3900
     caaatttagt aatatgcaag agtggatgaa aggtccggat tttctgcttc atgtcagcac      3960
     ccgctggccc atcgacggac cgcttgaatt gacgcctgcc gagttggtaa attttcactc      4020
     cgaactgact gtcgatgcca ccgctgattc gttgtgctgc actgtatctg aggagtaccc      4080
     tattgattta cccgatatcg agcgattctc cgatttcaat cgacttatta ggtcgacagc      4140
     gtattacctg aggatgaaaa agatattagc attaccaaaa aatgaaaagc caaaacgttt      4200
     attcatcact gtgcacgaca tgactgacgc aagaaatgca tggtatagga aagtacagtc      4260
     ggaggtgttt ggagatgaat tgcgtagctt aaagcagacc gggtatgtta agaacagtag      4320
     tcgcttgaaa acctattcgc cgtttatcca caacggaata gtccgtatgc gaggacgtgt      4380
     gcaagacaac agtaagccgt ttgatgttaa caaccccgtc attctccccg ataatcatcc      4440
     attttcgatg ctactgatcc gcatgtacca tatcgttaac gctcaccaag gacttgaaac      4500
     gatcgtcaat aacatcaagg agcgtcatcg cattctgaag atccgttcac aggtgaagaa      4560
     gtacactgca tcctgcataa agtgtcgaga gcttcgcgct cttccgaccg ttccgcaaat      4620
     gggtaatctt cctccggagc gaacaacacc gtttgcattc ccgttcacca ataccggaat      4680
     agattatttt ggaccgttgg ttgttaaggt tggacgtcgc ttagaaaaaa gatgggtggt      4740
     tctttttacg tgtctgactt ctagagctat acatcttgaa gtagtacctt cgctggacac      4800
     aaatagctgc attatggcca tccgttgctt tatgtcaatc cgtgggttac cgcagtgcat      4860
     tatgacagac aatgggacaa attttactgg cgcagatcaa gaactaaaaa ggctagtaaa      4920
     aacattagat caaccgcaga tcgaggattc gatgagtgtt agaggtgtac agtggaaatt      4980
     catcccaccc ggtgctccgc actttggagg gtgttgggag cggttagtgc gctctgtaaa      5040
     aaatgctcta cgtgcgatgc ttcaagaaag acacccgaca gatttggtgc tgcgtactac      5100
     attatgtgaa gtaatgaata ctgtcaacaa taggccgttg acgcacgttt cgagtgatcc      5160
     attagacgct gaaccgttga ctccaaatat gctacttttg gggaggaacg attcaataca      5220
     atttgaccat gacttcgacg agagggacct agattgccga gcagcctaca aaaatgctca      5280
     aatttacgct gatcgtttct ggcgtaaatg gttatcgtct taccgtccag aactgataag      5340
     aagccgcaag tggcctgata acagaaacta ccacgaatat catgttggtg attttgtaat      5400
     gatagtagat gagaatttac atcgaggatg ctggccgaaa ggagttgtcg agaagattta      5460
     caaaggtcca gatggaaaaa ttagaacggt gtccgtgaag acttcaaaat catcgttcac      5520
     aagacctgtt agcaaaattg tattgctaca agcgaacatc tcgtttccgg gctcggagaa      5580
     tgttgccaac actggtagca actaattatg ttgctcggat atcgttggcg ccatagcaac      5640
     cggataacaa atctaagtaa gctgcggctg aaaaaaaatk agactgaacg aaaaattcaa      5700
     gcgatcaaga cgtgcgagaa gaaaaactta tcaaactagt taaaattaga aaacttaatg      5760
     ttaaattagt tctaatccta aatgtaaaat aaaattagtt aaaattactt tgaagcattt      5820
     cattcgagtt tgtctggtaa aatcctacaa atagtatttg tagcagctgt agcagg          5876
//
ID   BEL-232_AA-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-232_AA_;
KW   BEL-232_AA-I; BEL-232_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-302
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 920-920 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 302 BP; 36 A; 91 C; 83 G; 92 T; 0 other;
     tgagtgctga cggtggcctt caatctgtgg ccattccgtt ccgccgactg gattttacct        60
     tggcccttct tctccggcag gtgagtgctg acggtggcct tcaatctgtg gccattccgt       120
     tccgccgact ggattttacc ttggcccttc ttctccggca ggtgagtgct gacggtggcc       180
     ttcaatctgt ggccattccg ttccgccgac tggattttac cttggccctt cttctccggc       240
     aggtgagtgc tgacggtggc cttcaagctg tggccattcc gttccgccga ctggatttta       300
     ca                                                                      302
//
ID   BEL-233_AA-I repbase;    DNA;    INV; 6233 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-233_AA_;
KW   BEL-233_AA-LTR; BEL-233_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6233
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 921-921 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5288-5836] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           540..1904
FT                 /product="BEL-233_AA-I_3p"
FT                 /translation="MKTMRLSYKKCMDGLDQEMQNMRRSYEEAQGKKPERP
FT                 HPSGLTNEKQRDLPKSSVVNEAMFRRNNDPGSVNHLKALNDECSSDEEDDD
FT                 DEEDYYEDEGNTECITGGSNTAPYGLGQQCSGPTKSQLAARSGVSKKLPVF
FT                 TGKPEDWPLFYGSYVASNQACGFSDVENLVRLQESLKGPALESVRGQLILP
FT                 KCVPKIIEKLRQLYGRPELILQSHLERIRKLDPPKPEKLASFVPFGNAIEQ
FT                 LCEHLEAADLQQHMVNPILIQDLVDKLPANDKRGWVRYKKSKKQVTLRTFT
FT                 DFVGAGAAPRAPPRGGPPGPAPGGRRAAPARPGPGRAGPPGPGGGGARPGR
FT                 GGPAPRRGAGRAGAGAGAGPPRPPARAPRRGPPPRGPRGRRPRRGAPRPRR
FT                 GAAAAGPGGRRRRAPPARRPAQELSRKHVRQTSAWNKIRDLGEVIAILTVV
FT                 AEAEPWKMVY"
FT   CDS           3857..6232
FT                 /product="BEL-233_AA-I_2p"
FT                 /translation="MGFFDPLGLLTPFTVHGKTLVQDLWRTGCTWDDEVND
FT                 DCWMKWKRWIGLLPEVEAIRIPRCYFGDAPWSSVQSIELHIFTDASEYAYG
FT                 CVGYLRTVIEGDVRCCLVMSRSKVAPLKRQSIPRLELMAAVLGARMLHTIL
FT                 NTHSIKFQRHILWTDSQTVRSWILSDQSKFKQFVAFRIGEILELTRSTDWR
FT                 WVPSKLNAADVLTKWGRGPPLQSDGSWFAGPTFLLDPEENWPTQALSIEET
FT                 NEEVRAVVLHHEAIMVEKVINSERFSRWTRLLRSTATVLRFIDNCKKKKDG
FT                 LPLFTSKATLNQMPMIKGERLTICRPLQQEELQRAENILWKLVQNQSFPDE
FT                 VAILLQNRGINDGQRPMSIEKSSTLYKLTPFLDENSVIRMGGRMEASESLP
FT                 FDMKYPIILSRFHDVTRKVILHFHERYGHANQETVVNELRQKFRIPNLRTT
FT                 VGQIVRSCCKCKVMHSRPRVPMMGPLPVQRISPQLRPFNAVGVDYLGPVEV
FT                 TVGRRIEKRWIALFTCLSVRAVHLEVAHSLSSQSCLMAIRRFICRRGCPEN
FT                 FFSDNGTNFKGASKELLKRVEVDSAEAVSSSTTKWNFNPPGAPHMGGVWER
FT                 MVRSVKEAMLALNDGRKLTDEILMTTLGEAEDMINTRPLTYKSLEPSEVEA
FT                 ITPNHFLRGTVRDLDLNRNGPTELSEALRNMYKRSQYLADKMWERWYKEYL
FT                 PTINQRTKWFDDPKALQIGDLVFVMDGKSRKNWTRGIIEEVFAGQDGRIRQ
FT                 ANVRTAGGVFRRAAANLAVLEIQDGKSGFSGELVPELRAGE"
XX
SQ   Sequence 6233 BP; 1750 A; 1428 C; 1703 G; 1336 T; 16 other;
     aactcaaaaa agtatgagtc agtcggatct aacctcaaat ctctccgata cggaagagct        60
     ggatttcacg attacgcctt gttcggcctg taacaagaca tcgacaacga atgaaccaat       120
     ggtcggttgt gacgcgtgta accgatggtt ccactatcga tgcgtaggag tgaccgaagc       180
     cgttaagaag gagaaacgat ggttttgtcc tgagatcgta tgccaagaaa cggcgaagaa       240
     agctaaaaaa actagcagca ggaaaaactc caatcgttcc aaaccagatc aagtgcaggc       300
     ggccgtgcaa ggaactgccc aggaacaaaa attgaaggca atggaagagg aatacgcgag       360
     acagatggaa gatctagaaa acgagaaaat cctccgggaa aagcaaatgg aactccaaca       420
     agtaagccct gaaggagaaa aggctgcaga ttgaaaggga gttacgagaa aaggaattgg       480
     cccaggaaaa gcttctactc gaccgagccc ttgaggaaaa aacggagcat ttcgagaaga       540
     tgaagacgat gcgtctgtcg tataagaagt gtatggacgg tttggatcaa gaaatgcaga       600
     acatgcgacg aagttacgag gaagctcaag ggaagaagcc cgaaaggccc cacccatccg       660
     gccttaccaa cgaaaagcaa cgcgatttac ccaaatcaag cgtagtgaat gaagcgatgt       720
     tcagaaggaa taacgatccg ggaagcgtaa atcacttgaa agcgctgaat gacgagtgta       780
     gcagcgatga ggaagatgac gatgacgaag aagattacta tgaagacgaa ggtaatacag       840
     aatgcatcac aggcggtagc aatacggctc cctacgggct ggggcagcag tgtagcggcc       900
     ctactaagag tcaactagcc gcgcgaagtg gtgtttccaa gaagctgccg gtattcacag       960
     ggaaaccgga agactggcca ctcttctatg gctcgtacgt agcgtcgaat caggcttgtg      1020
     gtttcagtga cgtggagaac ctcgtccgac tccaagagag cttgaagggg cctgctctcg      1080
     agagcgtaag agggcagttg attcttccta aatgcgtgcc gaaaatcata gagaaactgc      1140
     gtcagctgta tggccgtccc gaattgattc ttcaaagtca tctggagcgt atacgaaaac      1200
     tagatcctcc aaagccagaa aaattagcgt cgttcgttcc ctttggaaat gctattgagc      1260
     agctctgtga acacctggag gctgcagatt tgcagcagca tatggtaaac ccaattctta      1320
     ttcaagacct ggtggataag ctaccagcca acgataaacg tggttgggtt cggtataaga      1380
     aatcgaaaaa gcaggtgacg ttgcggacat tcaccgattt cgtcggggcc ggggcggccc      1440
     cccgggcgcc gccgcggggg ggcccgcccg ggccggcgcc ggggggccgg cgcgccgcgc      1500
     cggcgcgccc ggggcccggc cgcgcggggc ccccggggcc gggggggggc ggggcgcgcc      1560
     ccgggcgggg ggggccggcc ccccgccgcg gcgcgggccg cgcgggcgcg ggcgccgggg      1620
     ccggcccccc gcgcccgccg gcgcgcgcgc cccggcgggg gccgcccccg cgcgggcccc      1680
     gggggcgccg cccccggcgg ggggcccccc gcccgcggcg gggcgccgcc gccgcggggc      1740
     cgggggggcg gcgccgccgg gcgccgccgg cgcggcgccc cgcccaagaa ttgtcgagga      1800
     agcatgtgag gcaaacgtct gcttggaaca agatacgaga tttgggagaa gtaatcgcaa      1860
     tattaacagt ggtggcagaa gcagagccat ggaaaatggt gtattgatga accatgaagc      1920
     tacgaatagc actgcaggga ttccgtccga gagatctaga ctgaaggcat gtaaggcatg      1980
     tcagcgcacc gaccaccgtt tgcgattttg cgaggatttt cgaaaaatga actacgctga      2040
     tcgaatgcac atcgtgacaa gatggaaatt gtgcaacatt tgtcttaacg accacggaaa      2100
     tgcgacatgt aaatttaaga tccattgtga cgtcggtggc tgccaacaac gacacaatcc      2160
     gcttcttcac ccagcgggag gcgctttcgg tacgagtgtg catattcgaa ccaccgtatc      2220
     agtgctcttc aggattatcc cwgttcggtt gtattgcggc aatagaacgg tcaccacatt      2280
     agcctttctc gatgagggcg cttcggttac gatgatcgaa aacgagctgg tggacagttt      2340
     aggcttggta ggagttccgg agaggctaac gattacctgg actgcggata tttcacgagt      2400
     tgagaaaagt gcgaagcgag tcagcgtgtg gacatcggcc atcgacgacc acgagcgact      2460
     tttattggat tatgtgtaca ccgtggagag tctacgcctt ccaatgcagt cgctggacgc      2520
     taggacacta tcagagcagt ataagcactt acggaatttg cctataacct cataccgaga      2580
     tgctcgacct ggtatgctma tcggactcaa caacctccac acgttcgcgc ccattgaagc      2640
     aaaatgcggc gcaccgggtg aaccaattgc ggtacggtgc aagctakggt ggaccgtata      2700
     tggaccaagg aaagagaccg catcgaattc gaacgcagtt gtaggatttc acgatggtgt      2760
     cagtaatgaa gatctgcatg acctaataaa aacgcactac gcattagaag agtcagtggt      2820
     tactgtaaaa cgggagtcgc gtgaagatga aagggctcta gatattctgc gacgaacaac      2880
     taaacggatt ggaaatcgat wcgaaactgg cctgctgtgg aaagatgats aagtgacctt      2940
     tcccaacagc tatccaatgg cagttagaag gctgatgcat ctggaacgaa agctggcaaa      3000
     ggacccggaa ctatacgaaa atgttcgcag gcagattgcg gaataccaac aaaaaggcta      3060
     tgcccactta gcatcggagg aggaaatatc cggaacagat ccgcgtaaag tttggtattt      3120
     accactcaac gttgttttaa atcctcgcaa accgggaaaa atkcgcttag tttgggatgc      3180
     tgccgcaagc gtagatggcg tatctttaaa ctcgcaattg atamcaggtc cwgacatgtt      3240
     gactccgttg atmtctgttg tcagtagatt ccgtgaacat agaatcgcgt tcggagcwga      3300
     cattcgcgaa atgtatcacc asttgcgaat taccgaagcc gacaaacaag cacagcgttt      3360
     cttgtttcgg atgaataagg aggacccgat taacgtttac gtcatggacg tcgctamatt      3420
     tgggtcgaca tgctccccat gctcggccca atacgtcaaa aaccamaacg caatggagta      3480
     cgccactaca tatccagatg ccgcggcagc mattatcgac ggacattmtk tagacgacta      3540
     tttcgacagt gtggaaacta tcgaggaggc aattcaacga gcaaaagaag ttagctttat      3600
     ccacgctcaa ggaggatttg aacttcgaaa ttggatttca aacgcgccag aagttcttca      3660
     tggtttggga gagataaagg ctgctcagcc agttcacttc ggtcgagcca aggaaagcga      3720
     cagtgaaaga gttcttggaa tcatatggag tccagaccga gatagctttt cgttttcggc      3780
     ggagcaccgg gaacatcttc aagtatattt aagccttcag aaaaaaccta caaaaaggat      3840
     aattttgagc tgcgtcatgg gattttttga tccgcttgga ctccttacgc cgtttacagt      3900
     ccacgggaaa acgcttgttc aagatctttg gcgaactggc tgcacctggg acgatgaagt      3960
     gaacgacgac tgctggatga aatggaaacg ctggatcgga ctacttcccg aagtagaggc      4020
     gataagaatt ccacgctgtt atttcggaga cgcgccatgg tcatccgttc aatcgattga      4080
     actgcatatt tttaccgacg ccagtgaata cgcctatggc tgcgtcggct atctgcgaac      4140
     ggtcatcgaa ggagatgttc gatgttgcct tgtaatgtcc cgctcaaaag tggcgccact      4200
     caaacggcaa tcgattccgc gtttggaatt aatggcggcc gttttgggtg cacgaatgct      4260
     gcatactatc ctgaacactc actcaatcaa atttcaacgc cacattctct ggacagattc      4320
     ccaaactgtg cgcagttgga tcctctccga tcaaagcaaa tttaagcaat ttgtggcttt      4380
     ccgcataggc gaaattttag aattgactag atctacagac tggcgttggg ttccgtccaa      4440
     attgaatgca gcggatgtct tgacaaagtg gggaagaggc ccaccattgc aaagtgatgg      4500
     ttcctggttt gccggtccta cttttttgct cgatcctgaa gaaaattggc ctacacaagc      4560
     actatcaatt gaggaaacaa atgaggaagt acgtgccgtt gtactacatc atgaagcgat      4620
     tatggtagag aaagtaatca acagtgaaag gttttcgagg tggacgaggc ttctaagaag      4680
     tacggcaaca gtacttcggt ttatcgataa ctgtaaaaag aagaaggatg gtctgccatt      4740
     attcacatcg aaagctaccc tgaatcaaat gcccatgatt aaaggagaga gactgacgat      4800
     ttgtcgacct cttcaacagg aagagctaca acgagctgaa aacattctat ggaagttggt      4860
     gcagaaccaa agttttccag atgaagtggc gatacttttg caaaaccgag gaataaacga      4920
     cggccaacga ccgatgtcca tagaaaaatc cagtactctg tacaaattga cgccgtttct      4980
     ggacgaaaat agcgttatcc gaatgggcgg tcggatggaa gcttcagaat ctcttccatt      5040
     tgatatgaag tatccgatca tcctatctcg tttccatgac gtcacaagaa aggtaatact      5100
     acatttccat gagagatatg gacacgcaaa tcaagaaact gtcgtaaacg aacttcggca      5160
     gaaattccgt attccaaatt tacgtactac agttggccaa atcgtacgaa gttgctgcaa      5220
     gtgcaaggtt atgcattcac gtcctcgcgt tccaatgatg ggaccattac cagttcaacg      5280
     aatttcaccg caattacgtc ccttcaatgc cgtaggagtg gattatctag gtcctgtcga      5340
     ggtaaccgtt ggccgtagaa tcgaaaaaag gtggatagct cttttcactt gtttgagcgt      5400
     cagagctgtt cacctagaag tagcccattc actatcatcg caatcatgtc taatggcaat      5460
     ccgaagattt atatgtaggc gtggatgtcc tgaaaatttc ttttcggata atggaaccaa      5520
     tttcaaaggg gccagtaagg agttgctgaa acgtgtcgaa gttgattccg ctgaggcagt      5580
     aagtagttcc acgacgaagt ggaactttaa tcctccagga gctccgcata tgggcggggt      5640
     ctgggaaaga atggtgaggt cagtcaagga agcaatgttg gcactgaacg acggaagaaa      5700
     actcaccgat gaaattctga tgacgacatt aggtgaagcc gaggatatga tcaatacgcg      5760
     gcccttaact tacaaatcac ttgaaccttc tgaagttgaa gccattactc ccaatcactt      5820
     tctgcggggg acagtacgcg acctagacct taaccggaat ggacccacgg agttgtctga      5880
     agcattgaga aacatgtaca aacggtcgca atacttagca gataagatgt gggagcgatg      5940
     gtacaaggag tatctgccca ccattaacca acgcaccaaa tggtttgacg atccgaaggc      6000
     tcttcaaatc ggggaccttg tattcgtgat ggacggaaag agtaggaaga attggacaag      6060
     aggcattatc gaagaagtgt ttgcaggaca ggatggacga ataaggcaag cgaacgttcg      6120
     aactgctgga ggcgttttcc gacgagcagc agcaaactta gcggtgctgg aaatacagga      6180
     tggtaaatcc gggttctcag gcgagctggt accggagtta cgggctgggg aat             6233
//
ID   BEL-233_AA-LTR repbase;    DNA;    INV; 607 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-233_AA_;
KW   BEL-233_AA-I; BEL-233_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-607
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 922-922 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 607 BP; 259 A; 76 C; 115 G; 152 T; 5 other;
     tgtcaacacc gctgggcaat aataacgggg agccggaaag tgatgaacgc aaaacgtcag        60
     ggcaaagtac aagaagagga atcatacaaa aataagaaaa aacaacaaac cagtcgagtt       120
     taaaggatcg tgaatttatt aaaattatat tttccaaagt twatctactt tctaacagtt       180
     aaaaaatcaa atttgwagtg ggaataacct gtaagtaaaa taagaaacaa aacctgaaaa       240
     gaaaatatta taaaattaac tcaaattatt gaaatttagm cgattgttac tgaggaagta       300
     gagttcggaa aaacaawcta aaatcaagcg gacaattaat ggatttgaag taaattagta       360
     tctgaaatcg taagtaaaag aagataattg aaatgttaat gtaaattaat gaatttgtta       420
     caaataggtg aagaaatcag tcgaaaagta gaggggacgc agagcacgag gattagaaag       480
     gaaactactt tgtaagttat gaaaatgaaa ataatttkac tgtttactta ccttgaataa       540
     accattacag tttgagctga ccgataaatt ggaatctgct tcaagatcag ttcccgaagt       600
     ccgaaca                                                                 607
//
ID   BEL-234_AA-I repbase;    DNA;    INV; 5519 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-234_AA_;
KW   BEL-234_AA-LTR; BEL-234_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5519
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 923-923 (2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other. The consensus includes a
CC   non-autonomous DNA transposon  (deleted).
XX
FH   Key           Location/Qualifiers
FT   CDS           101..2260
FT                 /product="BEL-234_AA-I_1p"
FT                 /translation="MQRTPVNKNVVASIPRVNDSISGEQHDRNKTVSESLR
FT                 SCASGSGASKRSHKSKVSSVSKTQSQIRALELVDELEEEELRVSLEQDRIE
FT                 AEQRLEALKIQKDLELKREQKKAEFIRKKRERAIQISELRSCSGASSCGST
FT                 QRVQAWLNENENTANDDVDNGATGNAPRGAAATGTAVNEALCHALKALHSR
FT                 NVRDLPQFSGNIMDWPIFENEFKTSTAEYKLTDRENLRRLNNALQGKARKT
FT                 VECLLSAHENVDLIMRMLKSNFGRTEWVVANRLELLRNLDYVKDGNIESFR
FT                 SFYNAVIGTAVALKNVKAEAYLINPELISQLAEKLPVFSKQMWVRHKAFLL
FT                 KQDLIIGFQEFSRWLEDEMENQLASMNPVFSNRKERKDVSFIRPRPPVLNV
FT                 NARAAQVQGKCPLCSSNDHRSLAKCEQFTKLSVNQRRSAARSCKVCYICLR
FT                 QDHSRRECRSDKTCSVCDKNHHDLVHSDEEYKKPVNTFEKKQAEDLCHVNG
FT                 RNERTLLRVGKVRIRSQGRVQDVFALFDEGSSTSMIDSNLAEKLDLRGPVS
FT                 PVTYRWTNGITHNDSESMMLSFQIAGPSDQAKWYEVDNVRTIKNLNLPSVD
FT                 FDIAKIMSLYPLLDEEKMSVLQNASPKMLIGSNNAGLIVPLKTVQYSVRGL
FT                 QLTRCHLGWTIHGEIEPGTVQVADQFHVFLCDNNQDLELTELIKQQYKVED
FT                 FGIRQQVQRCPKKMRELWTS"
FT   CDS           2191..3522
FT                 /product="BEL-234_AA-I_2p"
FT                 /translation="SRRFWNQTTGPTMSEEDERALDIMNRTLKRCEDRFEV
FT                 GQVYRYNNFSFPDSKPQALRRLTIMERKMDADPKFAEQYCQKIEDYIEKGY
FT                 ARKLRPEELNETSNTWYLPHFSVMTANKFRLVMDAKAKSHGFSLNDLLLKG
FT                 PDFVPSLTAVLMRGRQKKVAFMADIKEMFHQVRIREQDQNSQRFFWRGMNR
FT                 STPPEVYVMMAMIFGAVSSPSIAQFIKNFNAKELEERLPGVLRPIVKQHYV
FT                 DDYFDSTDTEQQAIDLIKNVITAHEHGGFKLVKFVSNSEAVLKSLDPSLRA
FT                 EPKTDVRVLGLLWKLSADEIVFSFDFPNLDEALRSGVDIPTKRQLLQFMMG
FT                 IFDPLNILSPVTIHLKILFQDLWRLQIAWDDQIPEGLIPKWKEWLRKTAQL
FT                 KEITIPRYYFPGVPSFRSVELHAFSDASDKAFATVIYMVHRYVVIALPGI"
FT   CDS           join(3479..4435,4439..5479)
FT                 /product="BEL-234_AA-I_3p"
FT                 /translation="FTWYIDMLLSLCRVSDKSHVALVLAKSRVAHLKSRTV
FT                 PRLELQGCVLSSQMMKVVQEELEVEITSTYFWTDSKICLAWLCTKEKLTAY
FT                 VGSRVCKIKENGHNIGMWNWIPSELNVADLATKSSKIESMTDWLRGPEFLK
FT                 HRQSEWPNQACVTMSSEEAVNFHLGLEADEESVCHQVYGKSDAVDMPDIGR
FT                 FSDYNRLIRSTAYYFKMRKILALPKKEKPKKFMINVHDMEEAKLAWFRKVQ
FT                 XESFAEEICSLRTSGHVKTSSRLHAHSPVLVDGIIRMKGRIQDKSKPFDVN
FT                 NPVILPDNHSFTNLLIGTYHNANGHQGETIVNNLKHRHRILKIKSQVKKFG
FT                 NLCVKCRELRAKPNVAQMGNLPPERTTPFAFPFTHTGIDYFGPLTVKVGRH
FT                 VEKRWVVLFTCMTSRALHLEVVPSLDANSCIMAIRCFMAIRGIPQKILTDN
FT                 GTNFTGANQELKKLVKELDQQQIEETLSVRGIEWSFIPPGAPHFGGCWERL
FT                 VRSVKTGMRAMLKERNPTDLVLRTTLCEVMNVVNNRPLTEVSSDPQEPEPI
FT                 TPNMLLLGRNNHMQYDHDFIESSLDCRAAYKQAQIYADRFWRKWVSAYRPE
FT                 LMKRQKWQDNRNYYEFAIGDFVMIIDENSHRGCWPKGIIEKVFYGSDGKVR
FT                 TVTIRTSRSTYTDQLRR"
XX
SQ   Sequence 5519 BP; 1655 A; 1149 C; 1351 G; 1363 T; 1 other;
     tttggtcctt cgataaccaa cacccagttt atatggaaga gcacctgcag cgaccgaaaa        60
     ggtgcaacgc aggtacggtc ccttagaaag aaaatccaca atgcaacgaa cccccgtaaa       120
     caaaaatgta gtagctagta ttcctagagt taatgatagc ataagcggtg aacaacatga       180
     tagaaataag acagtatctg aatcgttaag aagttgcgcg tcaggtagtg gtgctagcaa       240
     gcgatcgcat aaaagcaagg tgtcatcagt gagcaaaacc cagagccaga ttagagcttt       300
     ggaactcgtc gacgagctgg aggaagagga actgcgtgtc tccctagagc aggataggat       360
     tgaagcggag cagcgacttg aagctctcaa gatccagaaa gatttggagc tcaagaggga       420
     gcagaaaaag gccgaattca tcaggaagaa gcgtgaacgt gcaatccaga ttagtgagtt       480
     gcgttcgtgt tctggtgcat cgagttgcgg ctcaacgcaa cgtgttcaag catggttgaa       540
     cgaaaacgag aatactgcca atgatgatgt tgataacggc gccactggaa atgcgccgcg       600
     cggtgcagct gctaccggta ccgccgtgaa tgaggcattg tgtcatgctc tcaaggccct       660
     ccatagccgg aatgtcagag atctaccgca gttttccgga aacataatgg actggccgat       720
     attcgaaaat gagttcaaga cgtctaccgc cgagtacaag ctgacggaca gggagaacct       780
     cagacgattg aacaacgcat tgcagggaaa agctcgcaaa actgtggagt gtctgctgtc       840
     tgcccatgaa aatgtcgatc tgattatgcg aatgctgaaa tccaatttcg gacgcactga       900
     gtgggtcgta gctaatagac tggagctact acgtaacctg gattatgtta aggatggaaa       960
     catcgaatct ttccgttctt tctacaatgc cgtcatcgga acagcggtgg cgcttaaaaa      1020
     tgtaaaagca gaagcgtacc tgatcaatcc tgaactgatt tcccaacttg ccgagaagct      1080
     gcctgttttc agtaagcaaa tgtgggtgcg tcacaaagcg tttctattga agcaggatct      1140
     gatcatcgga ttccaggagt tttcgcggtg gttggaggat gagatggaaa accaactggc      1200
     aagcatgaat cccgtcttct caaaccgaaa ggagcgcaag gatgtatcgt tcatcagacc      1260
     aaggccacct gttctaaacg tgaatgcgcg agcagctcaa gtgcaaggga aatgccctct      1320
     atgcagttca aacgatcacc gaagtctagc caagtgtgaa cagttcacca aactgtcggt      1380
     aaatcaacga cgttctgctg caagatcctg caaagtttgt tacatatgct taaggcagga      1440
     tcattctcgt cgtgaatgtc ggtccgataa aacctgttcg gtatgcgaca agaaccatca      1500
     cgatctggta cattcggatg aagagtacaa gaagccagtt aacacgtttg agaagaagca      1560
     agctgaggac ctttgtcatg tcaacggaag aaacgaaaga acgctgctac gtgttggtaa      1620
     ggttcgaatt cgcagtcaag gcagagtaca ggacgtgttc gctctgttcg acgaaggatc      1680
     atccacctcc atgatcgact cgaatttggc tgaaaaattg gatctacgtg gtccagtatc      1740
     ccctgtaaca taccgttgga caaatggaat tacacacaac gattcagagt cgatgatgct      1800
     atcattccaa attgctggac caagcgatca agccaaatgg tacgaagtgg acaatgtaag      1860
     aactatcaag aatttgaatc ttccaagtgt ggacttcgac atcgctaaga taatgagttt      1920
     gtatccactt cttgatgagg aaaaaatgtc cgttttgcaa aatgcttctc caaaaatgct      1980
     aattggatca aacaacgctg gtttgatcgt tcctttgaag actgtgcagt attcagtgcg      2040
     aggattacaa ctaacgcgct gccatctcgg ttggacaatc catggagaaa ttgaacccgg      2100
     gacagtgcaa gttgctgatc agtttcacgt tttcctctgt gataacaatc aagatttgga      2160
     gttgactgaa ttgatcaaac aacagtataa agtcgaagat tttggaatca gacaacaggt      2220
     ccaacgatgt ccgaagaaga tgagagagct ttggacatca tgaatcgcac gttgaaacga      2280
     tgtgaagacc gtttcgaggt tggccaggtg tatcgttaca acaacttttc gtttcccgac      2340
     agcaagccgc aagcgctccg ccggctaacc atcatggaga gaaaaatgga tgcagatccg      2400
     aagtttgccg aacagtattg ccagaagatt gaagattata tcgaaaaagg ctacgcgagg      2460
     aagctgagac cagaggagtt gaacgagacg tctaacacct ggtacttgcc gcatttcagc      2520
     gtgatgactg cgaataagtt tcggctggta atggatgcta aagccaaatc gcatgggttc      2580
     tccctgaacg accttttact gaagggacct gatttcgttc catctttgac cgctgttctt      2640
     atgagaggta ggcagaagaa agtggctttc atggcagaca tcaaagagat gttccaccag      2700
     gtgcgtattc gcgagcaaga tcagaattcc caacggttct tctggcgtgg catgaatcgt      2760
     tcaacccctc ccgaagttta tgtgatgatg gcgatgattt ttggtgcggt atcttctccg      2820
     tcaattgccc agttcattaa gaatttcaat gcaaaagaac tagaagaacg acttcctgga      2880
     gtactgcgtc caatagtcaa acagcactac gttgatgact atttcgattc aactgacact      2940
     gagcaacaag caattgatct gattaagaat gtaatcacgg cgcacgagca tggtggtttc      3000
     aagctggtta aatttgtatc caactctgaa gctgtactga aatcgctgga tccatcgttg      3060
     agagctgaac cgaaaacgga tgttcgtgtt cttggtctgt tgtggaagct cagcgccgat      3120
     gagatagttt tttccttcga ttttcctaac cttgatgagg cactccgctc cggagtagat      3180
     attcctacaa agcgacagtt actacagttc atgatgggaa ttttcgatcc cctgaacata      3240
     cttagccctg ttacaatcca tctgaagata ttatttcaag acttatggcg acttcaaatt      3300
     gcttgggacg atcaaatacc tgaaggactg atcccaaaat ggaaggaatg gcttcgaaaa      3360
     accgcgcagt tgaaggagat aacaattcct agatattatt ttcccggcgt tccgtcattt      3420
     cggagtgtag agcttcacgc tttttcggat gcaagcgata aagccttcgc taccgtgatt      3480
     tacatggtac atcgatatgt tgttatcgct ttgccgggta tctgacaaat cgcatgttgc      3540
     actggtacta gccaaatcac gtgtagctca cttgaaatca cgaactgtcc ctaggcttga      3600
     actacaagga tgtgtgcttt ccagccaaat gatgaaggtg gtacaagagg aactggaggt      3660
     ggaaataaca tctacgtact tctggacaga ttcaaaaatt tgtttggcgt ggctctgtac      3720
     caaggaaaaa ctaactgcct acgtaggatc gagagtctgc aaaatcaaag aaaatggaca      3780
     taacatcgga atgtggaact ggattccttc ggagttgaac gttgcggacc tcgcaactaa      3840
     atcttcgaaa attgagagca tgactgactg gctgcgtggt ccggaattct tgaaacaccg      3900
     tcaaagtgaa tggccgaatc aagcatgcgt aacgatgtca tcagaagaag cagtgaattt      3960
     tcatttggga cttgaagctg acgaagaatc tgtttgtcat caagtttacg gaaagagtga      4020
     tgcagtagat atgcccgata ttggaagatt ttcggactat aaccgtctga taagatcaac      4080
     agcctattac ttcaagatga ggaaaatcct ggcgcttccc aaaaaggaaa aaccgaagaa      4140
     attcatgatc aatgtacatg atatggaaga agcaaaattg gcgtggttca ggaaagttca      4200
     amtggaatcc tttgctgaag aaatctgcag tttgagaacg tcagggcatg tgaaaacatc      4260
     aagtcgattg cacgctcatt ctcctgttct ggttgatggt attataagaa tgaaaggtcg      4320
     tatacaggat aagagcaaac cctttgatgt taataaccct gtgatacttc ctgacaacca      4380
     tagcttcaca aacttgctga ttgggacata tcacaatgcg aacggtcatc aaggatgaga      4440
     aacgattgtc aacaatctca agcatcgtca ccgtatcttg aagattaagt cccaggttaa      4500
     aaagtttgga aacctttgtg tgaagtgcag agaactacgg gcgaaaccga acgtggctca      4560
     aatgggtaat ttacccccag aacggacgac tcctttcgcc ttcccgttta ctcatacagg      4620
     aatcgactat tttggaccac taacggtgaa ggttggacga cacgtcgaaa agcgctgggt      4680
     cgttctgttt acgtgtatga ccagtcgagc gttacactta gaagtggtgc catcattaga      4740
     tgcaaacagt tgcataatgg ctattcgttg ttttatggcc attcgtggta tacctcagaa      4800
     aattctaact gacaacggca caaacttcac gggtgcaaat caagaattga agaagttggt      4860
     caaggagctc gatcagcagc aaatagaaga gacactaagt gtcaggggaa tagagtggtc      4920
     tttcatacct ccaggtgcgc cccattttgg cggttgttgg gaacgattag tgcgttcagt      4980
     gaagactgga atgcgtgcta tgctgaagga aagaaatcct acggacttag ttcttcgaac      5040
     aacactttgc gaggtgatga acgttgtcaa taatagacct ttaacggaag tctcaagtga      5100
     tcctcaagag cctgagccaa taaccccgaa tatgctgttg ctcggaagaa acaaccacat      5160
     gcagtacgat cacgacttta tcgagagcag tttggattgc agagcagctt acaagcaggc      5220
     acaaatatac gccgatcgtt tctggcgaaa atgggtgtca gcttatcgtc ccgaattaat      5280
     gaagaggcaa aaatggcaag acaaccggaa ctattacgaa tttgccatag gagatttcgt      5340
     gatgatcatc gatgaaaact cacatcgtgg atgttggccc aaaggaatta tagagaaggt      5400
     tttctatggg tcagacggca aagttcgaac agtaacgata aggacttcac gatcaacata      5460
     cacagaccaa ttacgaaggt aattctgtta cagggcagtt ctcttggtgc cccggagga       5519
//
ID   BEL-234_AA-LTR repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-234_AA_;
KW   BEL-234_AA-I; BEL-234_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-335
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 924-924 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 335 BP; 100 A; 74 C; 81 G; 78 T; 2 other;
     tgttggagag cagtaggcca tgaaaaagaa sgaagaaaaa aaaaattcat tacttgtcga        60
     accgcgtgtt agattagtgc aataaagcga aaacctccaa attagaaacc gtttaaattg       120
     twatttcatt ctccattgcg gagatttccc gaagaaaaag gaagaagtgt tccgtcggat       180
     tgtttccgac catttgcagg tgagcgaaac gtgccagcct ctgtgcagaa gcaagaagag       240
     ctcccgagaa gacgttcccg tcgcatttgg tccttctccg tttcccaggt gagcccgtcc       300
     ctgtcggtga atccgagcga gcgaatcctg aaaca                                  335
//
ID   BEL-235_AA-I repbase;    DNA;    INV; 6012 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-235_AA_;
KW   BEL-235_AA-LTR; BEL-235_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6012
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 925-925 (2011).
XX
DR   [1] (Consensus)
XX
CC   'CAAGG' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..1063
FT                 /product="BEL-235_AA-I_2p"
FT                 /translation="MQSAKVCGKCSSSGITGGMVGCDMCDAWFHPGCVEVS
FT                 ETNHNPDKTWRCTRCVNDDVREVASQHTSKSLGSSASSKARRELLLQQLEE
FT                 QRALKLKQRAEEDEIRKKRAEEDEAFLQQKLDIILEDDIESRSSRQSSRAS
FT                 RRKVEDWLNDGQGGQRAAQSKSIPQQPVAQQFASTSTAHDQGQVPYIFAPP
FT                 TGVPTSTSTPQSGKVVTALEVDNPKLSVPQQLGAFSYLKDTSRDNYGISTL
FT                 ASTQLVTAGGNIQSFPLHASPQVPQVCNNLESLRAKQSFADTKVTFSGQLP
FT                 QTVSSKPHALFGPQIGYAPTSQILSNVPPGSQSAIPLSTANVNSMP"
FT   CDS           1606..3564
FT                 /product="BEL-235_AA-I_1p"
FT                 /translation="MAVRNLVDHMYVAQLSDHLRNPMLLHELVEKLPSQLK
FT                 MQWSWFKRSQVDVNLATFGEFMTELVNTASDVTLPSDVQQSRPNLTGKDKQ
FT                 KLYVHAEARGSQATTRTLDTIKCVPEIDKLKRSCCYCSNEGHEVAACPQFK
FT                 ALDVDGRWKAIRSKGLCRICLIPHRKWPCRSGKECGVEGCRLRHNALLHSR
FT                 AADVVTRQNAPESRTPSSGVNVVQQNHHSTLNYCLFRYLPVTLEVNGKQVD
FT                 AFLDDGCQTTLMEAGLAADLDVTGPVEPLWLGWTSNISREEKGSQRITVKI
FT                 SGTGHKNQYQLSNVRTVQKLQLQGQTFHYDELQKIYPHLRGLPLSSYDEAV
FT                 PRLIIGIEHAQLLTALKVREGGSSEPVAVKTRLGWCVYGKQAGNSVTVERL
FT                 YVHTVEEQADNRELHDLMKKYFAVEEAAVATPIESADDNRARRILEQTTRR
FT                 TGEGFETGLLWKYDNPVFPDSYPLALCRLQSLEKRLDKDHELRTRVISLMR
FT                 EYETKGYAHKITQEEMELTDANRTWYLPLGVVKNPKKPQKVRLIWDAAARV
FT                 HGLSLNDMLLKGPDMLTSLFAVLIRFRQSQSRYVETSAKCFTKSGSYHRTN
FT                 RHNDFYSVKVTRNSHKSMSWTLQHLVPPVHPVPPNLLKTKTHKSSSHSFRG
FT                 RQKQ"
FT   CDS           3363..4895
FT                 /product="BEL-235_AA-I_3p"
FT                 /translation="MFHQIRIIPQDKQAQRFLFRESHKELPQIYVMDVATF
FT                 GATCSPCSSQFVKNKNAQEFQPQFPRAAEAIIKAHYVDDYLDSVDTTEEAV
FT                 QLVNEVKHVHALGGFEIRNFLSNSPEVLRQLGETDCLQKKSLDLDGSSHVE
FT                 RILGMVWKSTEDLFTFDVTFKEDLNKVLVQGVTPTKRQVLRLVMSLFDPYG
FT                 FIAHFVVHGKILMQHIWRSGTEWDDDIPLELQGMWNNWIGLLGRLQEVEVP
FT                 RCFFGESDSRIPSSIQLHIFVDASEVAYACAAYLRIVQDGVVRCVLVAAKT
FT                 KVAPLKPLSIPRLELQACVIGCRMMETVQSALDLTIEKRYFWTDSATALAW
FT                 IKSDSRRYHPFVAFRVGEILNNSSLDEWYHVPSKQNVADDATKWGNGPNFE
FT                 ANCRWYIGESFLYKPMSEWPIQVGKNWKTDEEMRVVFHTHQKLPPQTINVN
FT                 RFSTGIGCCGRQPTCIERRRISPGSRSALDKSSGCIRISFVDDVGVIRMNS
FT                 RISNSPSISFETKTR"
XX
SQ   Sequence 6012 BP; 1663 A; 1395 C; 1550 G; 1400 T; 4 other;
     aaactttaaa gattttctgc gaagtaggca gccacctcgc aacttcatca tgcagtccgc        60
     aaaagtatgc ggtaagtgct cgtccagcgg cataacagga ggaatggttg gctgtgacat       120
     gtgtgatgcc tggtttcatc ctggatgcgt tgaagttagc gagaccaacc ataacccaga       180
     taaaacatgg aggtgtacgc gttgcgtgaa tgacgatgta agagaagttg ctagtcagca       240
     caccagcaag tcgctgggaa gttcggcaag cagtaaggcc cgaagagagc ttcttttgca       300
     gcaactagag gagcaacgag cattgaagct caaacaacgt gcagaagaag acgaaattcg       360
     taagaagcga gctgaggaag acgaagcatt tctccagcaa aagctggata tcatcctgga       420
     agacgacatc gagagtagaa gcagcaggca aagtagtcgg gcaagtcgta ggaaagttga       480
     agattggctc aacgatggtc aaggcggcca gagagcagcg caaagcaaaa gtattcctca       540
     acaacctgtg gcccagcagt ttgcatcgac gtctacggct catgaccagg gacaagtacc       600
     ttatatcttc gcaccaccaa ccggagttcc cacctcaaca tctacaccac agtcaggtaa       660
     agtcgtaaca gccctagaag tagataaccc taagcttagc gtaccacaac aattaggagc       720
     cttttcgtat cttaaagaca ctagtagaga caattatggg atcagtactc tagcatcgac       780
     tcagttagta accgcgggtg ggaatataca gtcatttccc ctccatgcgt caccccaagt       840
     cccacaagta tgtaacaatc ttgaaagttt gagggccaaa cagtcattcg ctgacacgaa       900
     agttactttc tctggtcagc ttcctcaaac agtttcttca aaaccccatg ctttatttgg       960
     tccacaaatt gggtatgcgc ctaccagtca aatactgtca aacgtgccac cgggctcgca      1020
     aagtgcgatt cctttgtcga cagcaaatgt gaattcaatg ccggsagtac tgccgcttag      1080
     ttscgctgta tcatacgcga gtgtgccttt accgtcatcg tcaacagctg ttccagtttt      1140
     ggatgcgact caacgagtgc cgatcaccaa cgtgacgacg atttcatcgc atttcggaca      1200
     aacacagcca agtttacaac agttttgttc atcaccsatg ggtacagtgt atcagcctgc      1260
     acctagtagt gtacagctag cagcgagaca gataatgccc cgtgaactgc cgaacttctc      1320
     tggtgatcca caagactggc cgttgttttc tagctccttc tacaactcaa cggcggcttg      1380
     tgggttcaca gatgcggaga acctagcgag actccaacgc tgtctgaaag gacatgcttt      1440
     agagtcagtt aaaagccgtt tgttgatacc ggaatcggtg ccgcatgtaa tggaaacgtt      1500
     acgcatgctg tatggaagac cggaagtact catccacacc cttttaagga gattgcgaag      1560
     cgtgccacca ccgagaacgg agaatttatc gtaatcacat tcggaatggc ggtacggaat      1620
     ttggtcgatc atatgtacgt ggctcaactt tcggaccatc ttcgtaatcc aatgcttctt      1680
     cacgagttgg tggaaaaact tccgtcacaa ttgaagatgc aatggtcgtg gttcaagcgt      1740
     tcgcaagtgg atgtcaacct ggcgacattc ggagagttca tgactgagct agtcaataca      1800
     gcgtcagacg tgactctccc ttcggacgtt caacagtcaa gaccaaacct aacagggaaa      1860
     gacaagcaga agctgtatgt tcatgcagaa gcaagaggca gtcaggcgac cacgagaact      1920
     ttggatacta tcaaatgtgt accggagatc gacaaattga aaagatcttg ttgctactgt      1980
     tcgaatgaag gccatgaggt agccgcatgt ccgcagttca aggctttgga cgtggatgga      2040
     aggtggaaag ccattcgttc gaagggtttg tgcagaatat gtttgattcc acatcgtaag      2100
     tggccgtgtc gttcagggaa ggagtgcgga gtagagggct gtcgactacg tcataatgcg      2160
     ctgctgcact cacgcgctgc agatgtcgtg actcgtcaga atgcacccga aagtaggaca      2220
     ccgtcgagcg gtgtgaacgt cgttcaacag aatcatcatt caacgttgaa ctactgcctt      2280
     ttccggtatc taccagtgac tcttgaagta aatgggaagc aggtggatgc ctttcttgac      2340
     gatggctgtc aaactacact aatggaagct ggattggcgg ctgatctgga tgtcacggga      2400
     ccagttgaac ccctttggct tgggtggacg agcaacatct cccgtgagga aaaggggtca      2460
     caacgaataa cagtaaaaat atccgggact ggacacaaaa atcaatacca gttaagcaac      2520
     gtgcgtacag tgcaaaaact tcagttacaa gggcagacat tccattacga tgaactacag      2580
     aagatctacc cacatctacg gggcctcccg ctgagcagtt acgacgaagc agtcccaaga      2640
     ctaatcatcg gcatcgaaca tgcgcagctg cttacggcat taaaagtgag ggagggcgga      2700
     tcgagcgaac cagtggcagt taagactcga ctgggctggt gcgtgtatgg gaagcaagct      2760
     ggtaactccg tgacagtcga aaggttatac gttcacacag tggaggaaca ggcagataat      2820
     cgtgagttgc acgatctgat gaagaagtat tttgcggtcg aagaagcagc agtggctact      2880
     ccaatcgagt ctgcagacga taatcgagcc cgtcggattc tggagcagac aacacgcaga      2940
     actggagaag gctttgaaac cggattactc tggaaatacg acaatcccgt gtttccagac      3000
     agctatccac tagccttgtg taggcttcag tcgttagaaa aacgactcga taaagaccac      3060
     gagttaagga cgagagttat atctctgatg cgggaatacg agacgaaagg gtacgcacat      3120
     aaaataaccc aggaggaaat ggaactaacc gatgcgaatc gtacatggta tctacccctg      3180
     ggggttgtga aaaatccaaa aaagcctcag aaagtgcgat taatctggga cgctgctgca      3240
     cgagtgcatg ggctgtctct gaacgacatg ctcctaaagg gaccggatat gttaacatcg      3300
     cttttcgctg ttcttataag atttagacag agtcagtcgc gatatgtgga gacatccgcg      3360
     aaatgtttca ccaaatccgg atcataccac aggacaaaca ggcacaacga tttttattcc      3420
     gtgaaagtca caaggaactc ccacaaatct atgtcatgga cgttgcaaca tttggtgcca      3480
     cctgttcacc ctgttcctcc caatttgtta aaaacaaaaa cgcacaagag ttccagccac      3540
     agtttccgag ggcggcagaa gcaataatca aagcgcatta tgtggacgac tacctcgaca      3600
     gcgtagacac caccgaagaa gcagtacagc tggtgaacga agtgaagcac gtgcatgcgt      3660
     taggtgggtt cgaaatacgc aactttttgt cgaactcacc agaagtcctg aggcagttgg      3720
     gcgaaacgga ttgcttgcag aagaagtcgc tcgatttgga tggttcatcg cacgtcgagc      3780
     gtatacttgg gatggtttgg aagtccaccg aagatttgtt caccttcgat gttacgttta      3840
     aagaagactt gaataaagtt ctggtgcagg gagttacgcc gaccaagcga caagttctgc      3900
     gactggtgat gtcgcttttc gatccctacg gattcattgc acattttgtt gtgcatggta      3960
     agattctaat gcagcatatc tggagatcgg gcacggagtg ggacgatgat attcctttag      4020
     aactgcaggg gatgtggaat aattggatcg gccttttagg acgtctgcaa gaagtcgaag      4080
     ttccacgttg tttcttcggg gaatcagaca gcagaatacc cagcagcata caattgcaca      4140
     tatttgtaga cgcaagcgaa gtcgcttatg cgtgtgcggc ttatctacgt atagtacaag      4200
     acggagttgt ccgctgtgtc ctcgttgctg cgaaaacaaa ggtagccccc ttgaagccgc      4260
     tatctattcc tcgtcttgaa cttcaagctt gcgttattgg atgccgtatg atggaaactg      4320
     ttcagtcagc gctggatcta actatcgaaa agcgctactt ttggacagat tccgctacag      4380
     ctctcgcctg gatcaaatcc gatagccgac gatatcatcc cttcgtagca ttccgagtag      4440
     gcgaaatcct aaacaactcc agtttagatg agtggtatca cgttccttcg aagcagaatg      4500
     tggctgatga cgccacaaaa tggggaaatg gaccaaactt tgaagcgaac tgtcgttggt      4560
     atattggtga atctttcctt tataagccga tgtcggaatg gccaatacag gtcgggaaga      4620
     actggaagac tgacgaagaa atgcgcgtgg ttttccatac ccaccagaag ctacctccgc      4680
     aaactatcaa cgttaacagg ttttccactg gtatcggttg ttgcggacga cagcctacgt      4740
     gcatcgagcg aaggcggatt tctcccggct cacgaagtgc gctagataaa agtagtggct      4800
     gtatcagaat ctccttcgtg gacgatgtag gagtgatcag aatgaatagc aggatctcca      4860
     actctccatc gatttcattt gaaacaaaaa cccggtaatt ccgccaaaga atcatgtgat      4920
     gattcgtccc tggttgacag ctatcatcga cgtttcttgc gtatgtataa cgacactgtc      4980
     ttcaacgaac tcggcagcgc ttcaggattc cagtcgcgcc agttcatcaa gcgagtcgct      5040
     agtgattgcc aacattgccg tgtcaaagtc gccgcacatc cgtgcattta gttataccgg      5100
     cgttgactat taggcccaat catggtgaaa cagggtcgta gtttggtaaa gcgttgggtt      5160
     gcatcgttca catgccttac tatccgtgcg gtgcatctag aaaccgtgca tagtctaacg      5220
     actcagtctt gcgtgatggc agttcgtcga ttcgcgagtc gcagaggggc cccagcggct      5280
     ttctactcag acaacgccac ttgcttcaaa ggagccagta atttgctatc ggaacagatt      5340
     caggccatac acgagcattg tgcagtaacc tttacgaacg ccaagactac gtggatttca      5400
     atccccattt gcactacatg ggcgggtgtt gggagcggat ggtccgctcc gtcaaggctg      5460
     caatagcggc cgtggctgaa cctctcgtca cccaaacgat gttctggaga cagtattact      5520
     agaagccgaa gcagtcgtca actctagatc atgacttaca ttccgttgat agtgcagacc      5580
     aagaagcctg acgctgaacc atttcactct ttacggcaca gggattgttc aaccaaggac      5640
     agcgtttaag tggaaggtcg actctaaggg acggctgaaa ctctcccagt atctatcgat      5700
     caattctgga agagatgggt tcgcgagtac ttgcgcgttg agcggcggac taaatggttc      5760
     cagccgacca agccactagc accgggagac gtagtagttg tagtcgacgt gaacaaacgg      5820
     aatggatggc tgagaggccg catcatcgaa gtgttcaacg gaaaggacgg tcaggttagg      5880
     agcgcaaggt tcagacgagt gaggctggag ttggctcatg cggccggccg taaagttgga      5940
     ctktcggagc gtgcaggcca accgcaagga ccaagatatt gaaggttctc cggaacttca      6000
     cgggcgggag aa                                                          6012
//
ID   BEL-235_AA-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-235_AA_;
KW   BEL-235_AA-I; BEL-235_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-595
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 926-926 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 595 BP; 217 A; 91 C; 115 G; 163 T; 9 other;
     tgtggaagaa ccacagggca atcgaattca gtaacgtcct tgtgagttcc gtatcaccca        60
     cagcagawcg tttgacgtag aatgaagaaa cgtcaacgta tgatgagatg gcagaataga       120
     aactgwtgac agaaagtttg gttggactag cgtcggcagt tgaagtaaaa actataatac       180
     agtcttaaat ttgcaatttg cttcaagtwa aggtaaattt aatattctaa aaggtttgtc       240
     aaaagtttga ttattcctaa atttattata gttcctagaa cgaaagwtta cagtacggaa       300
     gaatacggcg ttgagtatat tccgtcaaca atttkcttam aagtaagaca tgcaatataa       360
     cctaawccta awcgaacaat aaaagtaatg aatttgttat acctaggaat tawattagtg       420
     gcacacagta aagtgcatca agaaaatcga gtagtttcgg tagcgtcgag ataagcacga       480
     aaatgtaagt cttgagatgt aaaaatgatt aattgaaact aaaatcctta ataattacag       540
     ctttaaagct acaattgctg ctaaaagagc gtgtttctcc taccgatccg aaaca            595
//
ID   BEL-236B_AA-I repbase;    DNA;    INV; 6698 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 24.02, Created)
DT   06-DEC-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-236B_;
KW   BEL-236B_AA-I; BEL-236B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6698
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6698
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (06-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6698 BP; 1843 A; 1555 C; 1578 G; 1722 T; 0 other;
     ttttggtcct tcgagccgga ttctgaaccc gggtaccagt tggaaggaag atcaccattg        60
     ttgcttcgat cgaagcgcga ggatgtcgcc atcgcgccga cggtaaatcg ccatctcaac       120
     aaggattgaa tagaggtttc gccatcgaag tcaagttttg ttcacggagc ataaagggaa       180
     acatcttctg cattgtgatg ctacattgcg ccaatttccc cattacgatt gggctgttgg       240
     gagcctaact tcattcaaca aaggctgaag gattccgatg aagagcgatt ggattggaac       300
     gaatttggac tgcttgacga attaaggacg ctttagagga tcttcgttgc gctggaccac       360
     cgaaccggcc agagtatctg gtctctcagg taaatactct ttagttcggt gtatgtctag       420
     ccgaagcatt gcttgctctt tactaactcc aattttcgat gcatgttatt ggatttttcg       480
     catgaatgga tgcaagcgac aaccgtcgtt atcgaaccgt gatttattgg aggctacttc       540
     ggatcgaatt tgagattgag aggcaactag tgggccgacg aataccccct cgaggccagg       600
     acgattgcgg tggacagttt ggaagaggga gtgctctcta cctcccttct tggtgagtga       660
     attagtatat gtactgcact gccgaagcta ggcatttaga taatacacaa ttttgatgga       720
     atattctgtg aatcctcttc atttactgcc acgcaagccc tgtttgagaa ctgctcgtta       780
     gagcaagtct gctggatatc aacccaaatt gcattctcga cttttggatc tggttttgcg       840
     gtgttgttag tcctccaggt tagttctacg gtatatgtcc taccgaagct agtcctatga       900
     atactacatg caaattattc ctcttcaaat caccttaaat cattggagcc caatattgat       960
     cgcccgtttt gagctgagtt gttttgtaca atcgattatc agtcgctgaa tttgatgttt      1020
     tggattggaa tttcggactt tcggattggt gctgctgttg gtacctccag gtaggttgcc      1080
     acagtatatg tccggccgaa gccaaggttt ctttggatat tacaccccgc cttctcctct      1140
     tctatgatca ccaattggaa ttgagcctgt cccatagcaa gtttgaagtg acgtcatcac      1200
     attttcgaga agttttgatt gattggatcc ctagaacagt tacctgttct ctcaggtcag      1260
     tgaacttgga cagtatatgt ccgccgaagc aagtctatac gcggcatact acaccactcc      1320
     ttcttctacc acccgattga cgtcacacca tgccacctac aaccaggaaa ggatctaccc      1380
     tgaggcagct gcgggtacaa ctggaggatg taacggcctc ctttgatgac attaggtcct      1440
     tcatccaagg gttcaataat cagactacag tttctcaaat tgaagtccgc ttagagagaa      1500
     tcgatagttt gtgggaaagg ttcagtgaag ctttggttga actgaaatcg catgaagatt      1560
     ttgaggatga agagaaccat tacgatcgac tacgaagaga tatcagcgag cgttattatg      1620
     aggataaatc ctttcttaag gacaaggcaa gggaactaca tgaaccgact gatttggaac      1680
     agtccgttcg tgagccatca atgttgggtg ctctcgatca tgttcggcta ccgcagataa      1740
     aactccaaac attcagcgga ggaatcgatg aatggttgag cttcagagac ttgtttgctt      1800
     cattgattca ctggagaacc gacttgccag aggtagagaa gtttcattac ctgaaggggt      1860
     gtcttcaagg cgagccgaaa agtctgatcg actccctgaa gattaccaaa gccaattatc      1920
     agatcgcttg ggacactttg tgcaagtgat acaacaataa caagttactg aagaagaagc      1980
     aggttcagtc cttgttcaag cttccaaccc tatccaagga atccgtgtcc gagttgcgag      2040
     ccctagtaga agattatgat cgaatcgtcc aaacgctcga ccaaatcgtg gaaccagtgg      2100
     actataagaa cttgctacta gtgaatcttc ttactatgcg tctggaccca tatacccgtc      2160
     gtgcatggga ggaatgtgcg gcttccaagg aacaggactc gctggaggat ctaactgaat      2220
     tccttcggaa acggattcaa gtccttgatt ccctcccacc aagaccagcg gagtcgaagg      2280
     tacatcaaca acccttctta acaaaaccta aaccgacggc agtgaaaacc agttatagtt      2340
     cgatgcaatc aaccccagga agatgtgtgg cttgtgagga tagccacctt ctataccaat      2400
     gttccgtatt ccaacaactc tcggtggcgg aacgagattc actgctgaaa tccaacggtc      2460
     tctgccgcaa ctgttttcga tttggccatc aagcgaggga ttgtcaatcc aaattctcct      2520
     gtcggatctg caggaagcgg caccacactc tgatatgctt cagagcccag aaggacaatg      2580
     ctacaacggt cgtagcggtt gctgggggca accatccttc aaactcccag gtatcccaag      2640
     gatctactgg ttccaatcaa acccaagtgg ctaacatggc agccacggac gtttcagcgt      2700
     gcaacattgc tcaggtttca tcgagaattc tgcttgcaac agcggtcgtc gttgtcgaag      2760
     atgacattgg cgtcaagttt aatgctcgag ctcttttgga ttccggatcg gagagcaatt      2820
     ttgtatcgga acagctatct cagcgaatga aagtctccag aaaaaaggtc gatgtctctg      2880
     ttctcggcat aggacaggga tctacaaggg tgaagaattc aatccaaatg gttctgcact      2940
     cgcgagtttc ggattattcg cgagaaatga ctttcctggt actacccaag gtaaccacca      3000
     atttacccac ggtctcaatc aacacggatg ggtggaaggt accggaagga atccaattag      3060
     ccgatcctgc gtttttccaa tccaaagaag tcgacatggt ccttggcatc gaggcattct      3120
     tcgagttttt cgagactggc cgaagaattt ccatcggaaa tcacctacca actctcacgg      3180
     agtcagtatt cggttgggta gtctgtggtg gctgcccttc ttcaacaaaa tcccaacaaa      3240
     tcaactgcca tttctcagca atcacggagc tggaaaagtt gatggaacgg ttctggtcat      3300
     gcgaggagat ggagttcgaa aactcttact cacccgagga gaaattatgt gaagagttgt      3360
     ttcaacgtgg aatccaccga aactcagatg gtcgttacat tgttactcta cccaaaaacg      3420
     aggatgtact cccaactctg ggcaaatcac gagatatcgc ctatcggcgc ctccttggaa      3480
     cagaacgaag attagcaagg gacgataagt tacagaagca gtacatcgca ttcatggacg      3540
     agtatctgca gttgggacac atgcgaaagg ttgaaaataa tgaagaggaa ttcgtaaaac      3600
     ggtgttatct gccccaccac ccggtggtca aggaagccag taccactact aaggttaggg      3660
     ttgttttcga cgcttcctgc aaaacgtcat ccggagtatc cttgaatgat gcactgctgg      3720
     tagggccagt agtgcaggaa gacttgagat ccatcatcct acgaagtcgt acgaaacaga      3780
     ttctccttgt ttctgacgtc gagaaaatgt ttcgacagat cctcaccgcg ccagaagatc      3840
     gacctttgca gtccatactc taccggtttt ctcctgacga ggaagttgca gtgtacgaat      3900
     tgaacaccgt aacatatgga accaaacccg caccattttt ggcgacccga actcttcacc      3960
     agttggcagc cgacgaagaa acccattttc cgctcgcggc aagagcaata cgtgaagatg      4020
     tctatatgga tgacgtcatc acgggaacag acaacgtcga tactgccatt cacctgagaa      4080
     atcaactaac ggagatgatg gagcgtggag gtttcaagct cagaaagtgg tcctgcaata      4140
     ttcccgcggt attggatact atacccgcag agaatctggc tattcgggat atagccggag      4200
     ttgatttaga ccccgatcaa tccgttaaaa ctctaggact aacttggatg cccatcaccg      4260
     atacgcttcg ataccaattt gtaattcctc ccttggaaac ggaccctctt ggcctaattg      4320
     gtgccacgac ggtatcagca aagatcttta tgcaacagct gtggacactg aaagacgaaa      4380
     acggtaaaaa tttggattgg gaccatcctg tacctccaat ggtgggtgag gcctggcaaa      4440
     aattccatgg aagactccca attttgaatc aaatccgtgt agatcgctgt gtcataatac      4500
     caaacgctat ttcggtggag ttacactgtt tttcggacgc ttccgaaaga gcatatggtg      4560
     gttgcgtgta catacgaagc caagatagta acggaatggt ccaagtacgg cttctatcat      4620
     cccaatcgaa ggtagcacca ctgcgtagcc aatcaatacc tcggcttgaa ctatgcggtg      4680
     cacttctgtg ttctcaattg ttcgaaaaga taaggaatgc tacaagattg caagttccga      4740
     cttacttttg gacggattca acttgcgtgc tgtgttggat tgcagcttct cccacaacat      4800
     ggaccacatt cgttgcgaat agagtcgcta aaattcaaaa cctcactgat ggatggaatt      4860
     ggaagcatgt ggccggtatc gacaatcccg cagatctcgt atcccgcgga ttaagcccgg      4920
     aagacattgt acacaatgat ctttggtgga atggtccaaa ttggttgaag aatgattctg      4980
     aatcgtggcc aggtactatt gctgaaaatt tcggagctgg agaagaagaa agacgtcgca      5040
     ctacagttgc ttgcacggcg tcgccaattg cggaattcaa cgatatgctt ctcagtaaat      5100
     ttgggtcctt tacagacctc attcggcgaa cagcgtattg gctaaggttc atgaaactcc      5160
     tccaaacccc gaaagaaaag cgtactgaaa ggggcttctt gaagactgct gaactaaagg      5220
     ctgccgagta tgctatagtc cgaaacgttc aacgagaaat ctttagtgaa gaatggaagg      5280
     accttgagaa aggggagttc gtatcaagaa aatcgccttt aagatggttt catccgtaca      5340
     tttgccagga cggcttgatc agagtaggcg gaagactaaa aaattctgaa gaagtggaag      5400
     gtactaaaca cccgatagta atacctgctc ggcatcgact aaccaatatg attatgaggc      5460
     actttcatga aaaacttctg catgccggtc cgcagcttct attaggagta gttcgacaga      5520
     aattctggcc tttaggaggc agaaaagtag ctagactggt agtacaccaa tgtgttaaat      5580
     gctatcgaac aaagccatct accgtccagc agtttatggg tgaacttcct tcatcgcgtg      5640
     tcatcatatc ccgtccattc aataaaaccg gtgtagatta ttttggaccc gtctacatca      5700
     gaccagctcc aaaacgcact gccgtgaagg cgtacgtggc agttttcatt tgtctatgta      5760
     ccaaggccgt acacttagaa ctcgtgtctg acctttcaac ggaaagattc atgcaagccc      5820
     tacgccgatt tgtggcccgt cgcggtaggc ctgctgacat ttattccgac aacggcacaa      5880
     attttgttgg cgccaggaac aaattagctg aacttttcca gttattgaaa gaccatgaac      5940
     accacgatcg agtcgctatc caacttgccg aagatggaat tcaatggcat ttcaatccgc      6000
     caagtgcccc acactttgga ggactttggg aggcagcagt caggtcggcg aaaactcact      6060
     tgttgaaggt tattggagaa aacgttgttt caacagagga ctattgcacg cttctaacac      6120
     aggtcgaggc ctgtctcaac tcacgtccgt tgacaccgtt atcagatgat ccggatgacc      6180
     tcgagccgtt gacaccggca cacttccttc taggctcttc attgcaagca attccagatg      6240
     ttgaactatc aaccattcca tcgaaccgct tgagcaatta tcaaatgatc caacaaagtc      6300
     tgcaacattt ttggaaccgt tggcgtcgag aatatctatg ccaactacaa gcacgaacca      6360
     agcgctggaa gccagcggta actgtggaac caggtaaact catcgtcatt aaggatgaaa      6420
     atacccctcc gattcgatgg agaatgggca ggattattgc agcacaccct ggagctgatg      6480
     gaataattag ggttgtgact gtgaaaaccg ctactggaga gttgaagcgt ccggtggaaa      6540
     aaatctgcat tttaccgatc ccaaccaata gtgaggattt cgaatcacga ccgaattcgc      6600
     cgtaaaccag ctccataacc ctcccaacat cccatcccgt cgaagaggat ttttttcttt      6660
     actttcagaa attcgacaaa tttctgggtg ggtgagga                              6698
//
ID   BEL-236B_AA-LTR repbase;    DNA;    INV; 742 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 24.01, Created)
DT   06-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-236B_AA-I;
KW   BEL-236B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-742
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-742
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 74-74 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 742 BP; 225 A; 188 C; 158 G; 171 T; 0 other;
     tgtacaaata acccccagaa actacaaccc tgaactgcag tatgcagtct ctaactttcg        60
     ctttcgtttg cggctgacga tgacctacat atacaacgct attgttcgta actacggcct       120
     tgcttgaagc agaacaatat caccatatac accatgtccg agccagtatc tgctggcaca       180
     gcatccacac agttaggagg ctataatctt gcgagcgaat ctgatgtcga gatgagcgaa       240
     aggaacaacg aatgcgatct aaatctcgat ggacagccga tcaccacgag agatattcta       300
     cactggccgt gtacagagga gaccgtgggt catctgatga ctggatagag tgtctgcaga       360
     gagttcattt ccgatcgccg ccgggtatag atcaccgcaa ctagttaaga ttttactttg       420
     tgtttgtaga agtttgtctc taataaatgt agtatgtaga gtgtaatgtt tcattaaaaa       480
     taaagtgttt gttagtgcat gagttgttga agtgttcaat tgtaccagag gaacccccag       540
     atcaccaagg acgaagccca ccccagacca aggaccgaaa cccacggaaa caccaccaat       600
     aaccaccaac actccacggc taacaagtgc gctcaactta cccaccaccc taccccgcaa       660
     gcaacaataa ccaaccagtc ccatcagtgt tggagtcggt tggaaattcc actgatcgaa       720
     ggtaagggcc gactatccaa ca                                                742
//
ID   BEL-236_AA-I repbase;    DNA;    INV; 6741 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-236_AA_;
KW   BEL-236_AA-LTR; BEL-236_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6741
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 927-927 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5673-6278] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1356..2519
FT                 /product="BEL-236_AA-I_1p"
FT                 /translation="MPPTKKGSAALRQLKTQLEEVTASFDDITSFIQQFNG
FT                 NTTASQVEVRLERIDELWDRFSEALVDLKSHEEFEDEEKYYNKLRTVISNR
FT                 YYEGKSFLKDKAKELQEPNDSDTSIHDSSAVGVLEHVRLPQINLQKFSGEI
FT                 DDWLSFRDLFASLIHWRTDLPEVEKFHYLKGCLQGEPKTLVDSLKITKANY
FT                 QIAWDILCKRYNNNKLLKKKQVQSLFKLPTLSKESVSELRSLVEGFDRIVQ
FT                 TLDQIIQPEDYKDLLLVNLLTLRLDPYTRRAWEECAASKEQDALKDLTEFL
FT                 RKRIQVLESLPPKPADSKVFQQANPKPKPTAVKTSYNSVQSTGGRCVACKD
FT                 NHFLYQCSAFHQLSVADRDSLLKSNGLCRNCFRSGHQARDCQSKF"
FT   CDS           join(2934..4277,4281..6644)
FT                 /product="BEL-236_AA-I_2p"
FT                 /translation="MVLRSRVSDFSREMSFLVLPKVTANLPTTSINTEGWN
FT                 IPDGIHLADPAFFQSNDVDIVLGIEAFFDFFETGRRISIGDQLPILTESVF
FT                 GWVVSGGCSSSSVSQQINCHFSATTELEKLMEKFWSCEEVEFANSYSPEEQ
FT                 LCEDLFQRGVQRGSDGRYTVPLPKNEGVLSALGESWDIAFRRLLGTERRLA
FT                 RDENLRKQYVAFMDEYLNLEHMRKVEDVGEESVKRCYLPHHPVVKEASTTT
FT                 KVRVVFDASCKSSTGVSLNDALLVGPVVQEDLRSIILRSRTRQILLVSDVE
FT                 KMFRQILTTPEDRPLQSILYRFSPDEEVAVFELNTVTYGTKPAPFLATRTL
FT                 QQLAADEKTNYPLAARAIGEDVYMDDVITGTDDLDTAISLRTQLSDIMECG
FT                 GFKLRKWCSNVQRVLEGVPTENLAIPDSTGINLDSDKSVKTLGLTWMPATD
FT                 TLRQFDIPLLDPPIISTKRRILSNIATLFDPLGLIGATTVSAKIFMQRLWT
FT                 LKDAQGKRLDWDQPVPSTVGEEWRKFHEELPLLNEIRVDRCVIIPNAISVE
FT                 LHCFSDASEKAYGGCVYIKSQDSNGTVQIRLLSSRSRVTPLRSQSIPRLEL
FT                 CGALLLSELFEKVKNSTRLSVPTFFWTDSTCVLRWIAATPTTWTTFVANRV
FT                 AKIQTITEGWNWRHVAGTDNPADIISRGLSPKEIVHNKLWWEGPDWMKADR
FT                 ENWPCGGADDLEVGEEERRRTTVVCVASPIAQFNKYYLSKFGSFADLTRRT
FT                 AYWLRLMKLLQTPKEHRSENSFLTTAELKRAEYTIVQSVQREIFVDEFKAL
FT                 EKGESVSKRSPLRWFHPYIDADGLLRVGGRIKNSDELEGTKHPAVLPAHHE
FT                 LTRMIMRHFHERLMHAGPQLLLGVVRLQFWPLGGRNVARQEVHRCVKCYRT
FT                 KPAIVQQFMGELPSSRVTASRAFTKTGVDYFGPVYIRPAPRRTAVKAYVAV
FT                 FICMCTKAVHLELVSDLSTERFLQALRRFVSRRGRPSDMFSDNGTNFVGAR
FT                 NKLNELFRMLKDSGHHDRISTELAVDGIQWHFNPPSAPHFGGLWEAAVRSA
FT                 KNHLLKVIGENVVSSEDFSTLLTQVEACLNSRPLVPMSDDPDDLRPLTPAH
FT                 FLVGSSLQALPDNELSDIPSNRLNKFQLIQQRLQHFWNRWRREYLSQLQAR
FT                 TKRWKPAIAVEEGKLIVIKDENVSPIRWKMGRIIKLHPGEDGVTRVVTVKT
FT                 ATGELKRPVEKICILPIPTESEDNAS"
XX
SQ   Sequence 6741 BP; 1818 A; 1584 C; 1610 G; 1710 T; 19 other;
     ttttggtcct tcgagccgga ttccgaaccc ggggaccagt tggaaggaag atcaccattg        60
     ttgcttcgat cgaagcgcgw ggatgtcgcc atcgcgccga cggtaaatcg ccatctcaac       120
     aaggattgaa twgaggwwcc gccatcgaag tcaagttttg ttaaggatcg ccattcacgg       180
     agsataaagg gaaacawctt ctgcattgtg mwgcwacatt gcgccaaatt ccccattacg       240
     mttgggctgt tgggagccka acctcattca acaaaggctg aaggattccg atgaagagcg       300
     attggattgg aacgaatttg gactgcttga cgaattgagg acgctttaga ggatcctcgt       360
     tgcgctggac caccgaaccg gccggagtat ctggtttctc aggtaaatac tctttagttc       420
     ggtgtatgtc tagccgaagc attgcttgct cgttactaac tccaattttc gacgcatgtt       480
     attggattta ttgcatgaat ggatgcaagc gacaaccgtc gttatcgaac cgtgatttat       540
     tggaggctac ttcggatcga atttgtggaa ctagtggacc gacgagtacc ccctcgaggc       600
     caggacgatt gcggtggaca gtttggaaga gggagcgctc tctacctccc ttcttggtga       660
     gtgaacttag tatatgtact gcactgccga agctaggcat atagataata cacaattttg       720
     atggaatwtt atgtgaatcc tcttcattta ctgccacgca agccctgttt gagaactgct       780
     cgttagagca agtctgctgc atattaccca aagtgcattc tcgacttttg gatctggttt       840
     tgcggagttg ttagtcctcc aggttagttc tacggtatat gtcctaccga agctacgcct       900
     acgattacta catgccattc attcctcttc ataccactac acactattgg aacacgagtt       960
     atttcccaat tgagctggaa ccccattgga acgttcgaca agcaaccatt ggagtttgtt      1020
     gtatttggcc atatattacg gatttcggga tttgtaccgc tgttggtacc tccaggtagg      1080
     ctgccacagt atatgcccgg ccgaagccaa ggtttctccg gatattacac ccaccttttc      1140
     ctcttctttg aacccaaact ggaactgagt tacgaccctg ccaatattga tgggacgttt      1200
     cggaattttg acgttttttt tggaaagttt ggattactag aacagttacc tgttctgtca      1260
     ggtcagtgtt ttaggacagt atatgtccgc cgaagcaagt ccatacgcgg catactacat      1320
     aattcttttc tttgccaacc aatcgacgtc acatcatgcc accaaccaaa aagggatccg      1380
     ctgctttgag gcagctgaag actcagttag aggaagtaac ggcttctttc gatgacatca      1440
     catctttcat ccaacaattc aacggaaata ctacggcttc tcaggttgaa gttcgtttgg      1500
     agagaatcga tgaactgtgg gataggttca gtgaggcttt agttgatttg aagtcgcatg      1560
     aagaatttga ggatgaggag aaatattaca acaagcttcg aactgttatc agtaaccgat      1620
     attatgaagg gaagtccttc cttaaggaca aggccaagga acttcaagaa cccaacgatt      1680
     cggatacatc cattcatgat tcgtcagcgg tgggtgttct agaacatgtt cgtttgccgc      1740
     agattaatct ccaaaaattc agtggtgaaa tcgatgactg gttgagtttt agggacttgt      1800
     tcgcctcgtt aattcactgg cggactgatc ttcccgaggt agaaaaattc cattacttaa      1860
     agggatgtct tcaaggcgag ccaaaaactc tggtcgactc gttaaaaatc actaaggcca      1920
     attaccagat tgcttgggac attctgtgta aacgatacaa taacaacaag ttactgaaga      1980
     agaagcaagt ccagtccctg ttcaagcttc cgaccctctc caaagaatcc gtttctgagt      2040
     tgcgaagtct cgtcgaaggt tttgatcgaa tcgttcagac actcgatcaa atcatacaac      2100
     ctgaggatta taaggactta ctactggtga atctcctgac tctgcgactg gacccctata      2160
     cccgccgtgc atgggaggaa tgtgcggcat ccaaggagca agatgcactg aaggatctaa      2220
     ccgaatttct tcgtaagcgt atccaagttc tggaatcact cccaccaaag ccagcggatt      2280
     ccaaggtttt tcaacaagct aatccaaaac ctaagccgac ggcagtgaaa accagttata      2340
     attcggttca atcgactgga ggaagatgtg tggcttgtaa ggacaaccat tttctatacc      2400
     aatgttccgc attccatcaa ctttccgtgg cagacaggga ttcactgctg aaatccaatg      2460
     gwctttgccg aaattgcttt cgttctggtc atcaggcaag ggactgccaa tccaaattcw      2520
     cctgtcggat ttgcaggaaa cgtcaccaca ccctggtttg cttcaaatcg gagaaggaaa      2580
     atgctacaac ggtcgtagcg gttgctgggg gcaaccatcc ttcaaactcc aaggattccc      2640
     atggttcaac tggttccaat ccaactcttg tggccaacat ggcggccacg gacgtttcga      2700
     catgcaacat tgctcagaag gtgtcctcga gaattctact cgcgacggca gtggttatcg      2760
     tcgaagatga gatcggtgca aggttcaacg ctcgagctct attggactct ggatcggaga      2820
     gcaactttgt gtcgsaacga ttatcccaac ggatgaagst ctccagaaac aaggtcgacg      2880
     ttkcggttak cggcatagcg cagggaacag ccaaggttaa acatacagtc caaatggtac      2940
     ttcgctcgcg agtttcggat ttctcgcggg aaatgagctt cctggtacta cctaaggtaa      3000
     ctgcgaatct acccaccact tctatcaaca cggaagggtg gaatatacca gacggaatcc      3060
     atctggcgga tccggcgttc tttcaatcca acgatgtcga cattgtgcta ggaatagaag      3120
     cctttttcga tttctttgaa actggaagga gaatttcgat cggcgatcaa ctcccaatcc      3180
     tcacggaatc ggtattcgga tgggtagtca gtggtggctg ctcgtcttca agcgtatccc      3240
     aacaaatcaa ctgccatttc tcagcaacca cggagctgga aaagttgatg gagaagttct      3300
     ggtcctgcga agaggtagaa ttcgctaact cctattcccc ggaggagcaa ttatgtgaag      3360
     atttgttcca acgtggagtc caacgaggtt cagacggccg gtacaccgtc cctttaccaa      3420
     aaaacgaagg tgtcttgtca gcattgggcg agtcatggga catcgctttc cgacgccttc      3480
     ttggaacgga gagaaggttg gcaagggatg agaatctacg gaaacagtac gtcgcattca      3540
     tggacgagta cttaaacctg gaacacatgc ggaaggtcga agatgtcggc gaagaatcgg      3600
     tcaaacgatg ctatctacca catcacccgg tggtcaagga ggccagtact accacaaagg      3660
     ttagagttgt cttcgacgct tcttgcaagt cgtcaactgg agtgtccctg aatgatgcgc      3720
     ttctggtagg gccagttgtg caggaagatt tgaggtccat catcctacgg agtcggacga      3780
     gacagattct cctcgtatcg gacgttgaga aaatgttccg acagatcctt actacaccag      3840
     aggatcgacc tttgcaatct atactctacc gattttctcc cgacgaggaa gttgcggtgt      3900
     ttgagttgaa taccgtaacc tatggaacaa aacccgctcc tttcttggca actcggactc      3960
     ttcagcagtt ggcagctgat gagaaaacaa attatccgct cgcggcacga gcgattggtg      4020
     aagacgtcta tatggatgat gtcatcactg gtacagacga cctggatact gctatttccc      4080
     tcagaaccca actgtctgat attatggaat gcggtggttt caagctgaga aagtggtgct      4140
     ccaatgttca aagggttttg gaaggcgtac ctacagaaaa cttggctatt ccggacagta      4200
     caggcattaa tttggactcc gacaaatccg taaagacgtt aggactgact tggatgcccg      4260
     caaccgacac cctacgatwc cagtttgata ttcctctact agatccacca atcatcagca      4320
     caaaacgtcg tattttgtcc aacatcgcta cattgttcga cccccttggt ttgattggtg      4380
     ccacaacggt ttctgccaag atcttcatgc agcgactatg gacgttgaag gacgctcaag      4440
     gcaaacgctt ggattgggat caacctgtac cttcaacggt gggtgaggaa tggcggaaat      4500
     ttcatgaaga actccctcta ctaaacgaaa tccgcgtcga tcgctgtgtc atcattccaa      4560
     acgctatttc ggtggagcta cattgttttt ctgacgcctc ggaaaaggcg tacggcggtt      4620
     gcgtctacat aaaaagccaa gattcgaacg gaacggtcca gatacgacta ctatcatccc      4680
     ggtctagggt aactccactc cgtagtcaat caattccaag acttgaacta tgcggtgcac      4740
     ttctattgtc cgaactattt gagaaggtca aaaattccac aagactgtcg gttccaacgt      4800
     tcttttggac ggattcaact tgcgtactcc gttggattgc agctacaccc acaacttgga      4860
     ccacattcgt tgctaacagg gtggcgaaga ttcaaaccat aacggaagga tggaattgga      4920
     gacacgtagc tggaacagat aatccagcag acattatatc ccgcggacta tcaccgaaag      4980
     aaattgtcca caacaaactc tggtgggaag gcccagattg gatgaaggca gaccgagaaa      5040
     attggccttg tggcggtgct gatgaccttg aagtaggaga ggaagagaga cgtcgcacaa      5100
     cggttgtgtg cgtagcttca cccatagccc agttcaacaa atactacctt agtaaatttg      5160
     gatcattcgc agacctcact cggcgaacag cgtactggct gaggctaatg aaacttcttc      5220
     aaaccccaaa ggaacatcgt tccgaaaata gtttcttaac caccgcagaa ctgaaaaggg      5280
     ccgaatatac tatcgttcaa agcgttcagc gagaaatctt cgtagatgaa ttcaaggctc      5340
     tggaaaaagg ggaatccgta tccaaaaggt caccgctgag gtggtttcac ccatatatcg      5400
     atgcagatgg attgctcaga gtcggaggga ggattaaaaa ctcggatgaa cttgaaggta      5460
     ccaaacaccc agcagtctta ccagcacacc acgaattaac tcggatgatc atgagacatt      5520
     tccatgaacg gcttatgcat gctggtccac agctattact aggagtagtt cgactgcaat      5580
     tctggccact tggagggagg aatgtagcca gacaggaagt tcatcgttgc gtaaaatgtt      5640
     atcgcacaaa accagcaata gtgcaacagt tcatgggtga actaccatcc tcacgagtta      5700
     ccgcttcccg ggcgtttacc aaaactggcg tagattattt cggacccgtc tacatccgac      5760
     cagctccgag gcgcactgcc gtgaaggcct acgtagctgt tttcatttgt atgtgtacta      5820
     aagcggttca cttggagctc gtatccgacc tatcaacaga gcgattcttg caagcgcttc      5880
     gaagattcgt atcaaggcgt ggaagacctt cggacatgtt ttctgataac ggtacgaatt      5940
     tcgtcggagc caggaataaa ctgaatgaac tcttccgaat gctgaaagac tccggacatc      6000
     atgaccgaat ctctactgaa cttgccgttg atggaataca gtggcatttt aaccccccga      6060
     gtgcgccaca ttttggaggg ctttgggaag cagcagtccg gtcagccaaa aaccatttgt      6120
     tgaaggtgat cggagaaaac gtagtttcat cagaagattt ctccacgctt ctaacgcagg      6180
     tcgaagcctg cctcaattcc cgtccgttag tcccgatgtc agatgatccc gatgatctgc      6240
     gacccttgac tccagcgcat tttcttgtgg gttcctcgct tcaggctctc cctgataacg      6300
     agctgtcgga catcccatcg aaccgattaa ataaattcca actaatacag caacggctgc      6360
     aacatttttg gaaccgatgg cggcgagaat atttgagcca actgcaagcc agaaccaaac      6420
     gttggaaacc tgctatcgcc gtagaagaag gaaaacttat cgtcatcaag gatgaaaatg      6480
     tctctccgat tcgctggaag atgggaagaa ttataaagct gcaccctggt gaagatggag      6540
     ttaccagagt cgttacagtg aagaccgcca ccggtgaatt aaagcgtccg gtggagaaga      6600
     tatgtatttt accgattcca accgaaagcg aagacaatgc gtcataaacc tgctccatat      6660
     ccattcccga actcccatcc tgtcgaagag gattttcttg tttcttttca gaaattcgac      6720
     gtatttctgg gtgggtgagg a                                                6741
//
ID   BEL-236_AA-LTR repbase;    DNA;    INV; 726 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-236_AA_;
KW   BEL-236_AA-I; BEL-236_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-726
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 928-928 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 726 BP; 210 A; 198 C; 160 G; 158 T; 0 other;
     tgtacgaata tcccccagaa gctacaaccc tgacctgcag tatgcagtgt tgcactttcg        60
     ctttcgtttg acccaaacaa acaacgttat tgttcgcaac tacggcctgg ctggatagca       120
     gaacaatacc catcatacac cgtctctgat ccagtatctg ttggcacagc atccacacat       180
     agctacgagg ctatcatcat gcgagcggat ctgatgtcga gatgagagga gggagaaccg       240
     aatgcgatct aaatcccgat ggacagccga tcgtcacagg agattctcta cactggccat       300
     gcacagagaa gaccgcgggt caactgatga ctagaaagag tatctgccgc aagttccaat       360
     ccgatcgccg ccgggaatag ataaccgaaa agtagtgatt agttactctg tgttttagtt       420
     tgcccaataa atgtagcatg ttcagtgtag tgtttattta aataaagtgt ttgttagttt       480
     atcgatgttg gagtgttcaa ttgtgtacca gcgaactccc tggccaccaa ggacgctccc       540
     aaggacccaa gcccacggaa ataagcccac aacccgcgga aacaagccac caacactcca       600
     cggcagacaa gtcacccagc ttacccacca cccctacccc taagcaacat caaccaaccg       660
     gtcccatcag tgttggagtc ggatggaaat ctccactgat cgaaggtaag ggccgactat       720
     ccaaca                                                                  726
//
ID   BEL-237_AA-I repbase;    DNA;    INV; 5810 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-237_AA_;
KW   BEL-237_AA-LTR; BEL-237_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5810
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 929-929 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4857-5441] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2236..3192
FT                 /product="BEL-237_AA-I_1p"
FT                 /translation="MVEVDIRSWPIPAGLSLADPSFHVPDEVQLIIGAELF
FT                 YDLLMQGRMKIGDGCPTLVETRSGLDRQRSGFHLQQEDPTQRLQSQSATSE
FT                 DLNRTLSKFWELEACGEASPLTAREHAVEMHFERTVSRDASGRYIVRLPFN
FT                 ELKGKLGDSYETARRRFEKLLRTFVDDSKRIRYTAFMTEYLSLGHMVEVTD
FT                 DPLDGHFLPHHAVYKEASSTTKLRVVFDASSKTTSGLSLNDALNVGPTVQS
FT                 DLLSIILRFCSHQVVLTADIPKMYRQVRVHEADRYYQRILWLNDKNEIATF
FT                 ELATVTYGCSSAPYLATKVLLQLAKDE"
FT   CDS           4050..5810
FT                 /product="BEL-237_AA-I_3p"
FT                 /translation="MNQFVSNRVASIVELTQDYEWHYVRSENNPADLISRG
FT                 LMPDALEEHNLWWKGSPILNEIEPRTDEYDDSIELPEQRKVTTVSATKKVS
FT                 PIDFNRLSNFRRLQRAWVYVLRFIANIRTKTRNISEPTAVEMDEALLVIVK
FT                 LVQQEAFLDLFKLLSCGSQKRNNYSGLSPFVDSDGLIRVGGRLKYSSIPYD
FT                 GKHQLLLPDKHQVTLALIRKLHEEHLHVGQRGLLSIVRERFWPINAKSLIK
FT                 KTIATCYVCCRNNPRPSSQYMGNLPDYRITPSPVFANTGVDYAGPIVLKEA
FT                 GRKTVPYKAYIAVFVCLATKAIHLEVVSNLTTDNFIAALQRFVSRRGMISN
FT                 IYSDNGTTFVGANHELAALRTLFEDQIHQRKLNDFCVTKGIQWHFIPPRSP
FT                 HFGGIWEAGVKSAKYHLKRVVGETKLTYEEMATFLAQTEAILNSRPLIPVS
FT                 DDPNDVEVLTPSHFLIGRSAVCLPEPSYDQEKIGRLSRWQHVNLMKEHFWK
FT                 RWSAEYLHHLQSRPKWHNGITKFEVGSLVVLKDDNTPPHQWRIGRIQTTHP
FT                 GKDGIVRVVTIKTSTGEYRRAVTKVCVLPLIDPEESTAGE"
XX
SQ   Sequence 5810 BP; 1602 A; 1344 C; 1478 G; 1361 T; 25 other;
     tttggtccta tcgaacctga tttgattaag tatggttttt cgagttgatt tgggccgaat        60
     ttcagtgaat agttgtgatt ttgcgcgaat ttgcaccgtg tgcaaatagt ttggcgttcc       120
     gccatttgcc gcttcgttcc tgcaatcatt gcttgtgtgc gagtgcgaat tatgacgtgt       180
     ccggaacacg aaaacaaaat ggagtacttt gaaagagttg ctcgtggcaa ctgaactaag       240
     acgagtacaa gtgaaaattc agatgctgcc atgcagcaag tgcaaatgaa cttgtaatcg       300
     aaaacaaact aaaacattcg gtgctgctcg tagcagctaa gtggtatcga acagagaaaa       360
     agtgcttaca tgagtgataa aaataccaga tatgaaaccc caaaagttca gcgaaacata       420
     accccgaaga atttgttgga tgcgctgctt ggttcggtgc agaatagttc tccatcggaa       480
     acggagtcga atcttcctcc aacgaatccg gtatcgaatc gtcagcctac agaaactgta       540
     gcacagcaga aagcagctca agcaaaacgt ttggaaaagm aaaaagccat ggagcagaaa       600
     ctcgagaagg ctattagatc ggcgcgactt gkctaaggag aagcttmttc aaatccacga       660
     agagacgctg gaagtgcaag tgaacaacat tcactggctg aatttacagc tggagagcat       720
     acggagatgc tacgacgaca acgagaagac ccattcggag ctttgcgata tcgtttctcg       780
     tgagcaacgg aaggctttta cggaggttta aaacttgcag tttgaccggt actacgacaa       840
     tctgttcgtg caaatccaga ctgcaatagc aaaactgcaa agcgaagaga aagctaagca       900
     agctaggtgg agaagcgctc acattcggcc gtgccgcagc aatcgtccac ggcgaatccc       960
     acggctccgc acctgcaagt cccgttgccg accttcgatg gtagtctcga gaactggtac      1020
     acgttcaagt gcatgttcca gaccatcatg ggtagatacc ccaacgagtc tcctgcgatc      1080
     aagctgtacc atctgaagaa ctcacttacc ggaagcgcat ccggtaagat cgatcaggat      1140
     gtgatcaaca acaatgacta caaagcggca tggaaagtgc tcgaagacgc gtacgaggat      1200
     gaaaggctaa tcatcgatac ccacatcgat gccctggaga tgctgcccag gatgacgcgc      1260
     gagaacgggg aagaattgcg gaagctgatc gaaagctgct cgaaacatgt cgacgccctc      1320
     aaaaacctcc aactaccggc ggaaggattg ggtgagatga ttctcatcaa cacggtggcc      1380
     aagcgtttgg acaaggtgac gcggacgctg tgggagtcgc agttggacca agaggagtgc      1440
     ccgtctttcg gcgagatgat ggatttccta cgcgaacgat gcagaatact ccagaaggtg      1500
     aaaggctacc cggaacatcg agcgtcgagc taccgcagtc aagcagaagg gaaaaccaga      1560
     gcagaggatt mmttgccggc gaggaacttc gtscaagtat ccaaggaatg tatgccmstg      1620
     ttgcagcggt gaccacscka tctacaaatg tgagtsagtt ccgggagcta tgtgtgtccg      1680
     gccgctactg caaggtgaaa gcaagcgggt ctatgcttca actgcctgcg tcgcggtcat      1740
     cgtacggtag attgcaagtc cgagcagtta tgcaagacgt gccggaggaa gcaccatagc      1800
     ctcctgcacg acgacaaggc gtgtagcgaa sataagwscg acskaktccc gttccacccg      1860
     ccgctggtac ctgaagatcg ccgatgaatt acctgctgtm caagcccaag ggtctgttaa      1920
     ctgcgctcaa gtcgccgaac atgaagaaac aagtgctgct ctctactgca gacgtgctgg      1980
     tttgcgggtc aggaggattg agattggcgt gccgtgccct tctggattct gggtctgatt      2040
     ctaatatcat gtccgaggag ctcgcgagga gtctggatgt tgcctgggag cggatcgact      2100
     tgccgatcac agggctgaac aactctgaaa cccgggtgaa gtacaagttg cgaacgaaga      2160
     tcatctctcg cgtaaatcag ttcagcgcta ttctggactt cctggtggta tccaaagatc      2220
     accaccaacc tgccgatggt cgaggtcgac atacgctcgt ggccgattcc ggctggtctg      2280
     tctttggccg acccgtcttt ccacgtccct gacgaggtcc agctcatcat cggcgccgag      2340
     ctgttctacg acctgctgat gcaaggaaga atgaagatag gcgacgggtg ccctacgttg      2400
     gtggagacgc gatctgggct ggatcgtcag cggtccggtt ttcacctgca gcaagaagat      2460
     ccaacgcagc gtctgcaatc tcaatctgcc accagtgaag atttgaaccg aaccctgtcg      2520
     aagttctggg aattggaagc ttgtggggag gcttctccac tcaccgcacg ggagcacgcc      2580
     gttgagatgc atttcgagcg aacggtttca cgagacgcta gcggtaggta cattgtgaga      2640
     cttccattca acgaactsaa gggcaaactc ggcgactctt atgaaactgc tcgtcgtcgg      2700
     ttcgagaagt tgttgcgcac atttgttgac gactcgaaac gaatccgcta cacagcattt      2760
     atgaccgagt acctatcctt aggtcatatg gtggaggtga cggacgaccc tttggatgga      2820
     cattttctgc cgcatcacgc ggtttataag gaagcaagct cgacgacaaa gctccgcgta      2880
     gttttcgacg cttcttcgaa aacgacgtcc ggattgtcat tgaacgatgc gctgaacgta      2940
     ggaccgaccg tgcaaagtga tttgctatca attatactac ggttctgttc tcatcaagtt      3000
     gttttaacgg cggacattcc aaaaatgtac cgtcaggtac gagttcatga agctgatcgg      3060
     tattaccaaa gaatactgtg gctcaacgat aagaatgaaa tcgcaacctt tgaattggcc      3120
     actgttactt atggttgctc cagtgcaccg tatcttgcaa caaaagtact tcttcaactg      3180
     gccaaggacg aagmacmsga kctgccsttg cggcgaaggt ggtsgagaag acagctatat      3240
     tgatgacttt cttactggag gaaagacagc agaagaagtg atccagatct accaccagtt      3300
     gtcggatatg ctgaagcgag gaggcttcgg tgtccataaa ttttgctcca acgatgtcac      3360
     cgtactcagc aatattccag aagaactcca ggagacccga atggattttg aaaatgccga      3420
     cgttaacacc gctatcaaga cccttggaat tatttggaat ccggatcaag attacttcag      3480
     cttctacgtg aaaactttcg attcccaaaa ggtttttcca ccaacgaagc gaagcgtact      3540
     atcagatatt ggccaactgt tcgatccttt gggttttctc gggccaatca tcacaacggc      3600
     aaagctaatt atgcaagacc tttggcgcct tggcttgtcc tgggatcaac cattaccaca      3660
     acagcagatg gaggagtggc aagaatttcg acagcaactt ccgatggtta atgaaatgaa      3720
     gaagaagcga tgcgtggttg ctgaaacagg aaacgatgtg gaactccatg gattctctga      3780
     tgcttctaca agggcctacg gtgcagtcct gtataccaga tgcgtttctg cagatggatc      3840
     gatatacacc gaattagttt gcagcaagtc acgggttgct ccactcaagc caaccactat      3900
     tccacggctg gaactatgcg gagccttgct tctggctcac ctggtgacga aaacagtggc      3960
     ggcaatgaag atacctttca aaagtgtgac acttcggtgt gactcacggg caagtggtgt      4020
     tatgttggtt gaaaaaatca ccgcttgcta tgaatcagtt tgtttccaac cgtgtagcaa      4080
     gtattgtcga gttgacgcag gactacgaat ggcattatgt gcggtctgag aacaatccgg      4140
     ctgatttaat ttcacgaggg ttgatgcctg atgctctcga ggagcataat ctctggtgga      4200
     aaggatcacc tatcctaaat gaaatcgaac cccgtacaga cgagtatgac gattctatcg      4260
     agctgccaga acaacgaaag gtcacaacag tcagtgcaac aaaaaaggta tcaccgatcg      4320
     attttaatcg actcagtaac tttcgacgtt tgcaaagagc gtgggtgtac gttctgcgat      4380
     tcatcgcaaa catccgcacg aaaacaagaa acatttcaga gccgaccgca gtagaaatgg      4440
     acgaagcatt gctcgttatc gtgaaactag ttcaacaaga agcatttttg gatttgttca      4500
     agctactatc ttgtggttcg cagaaacgaa acaactatag tggattgtct ccatttgtgg      4560
     attcggatgg gctgatcagg gtaggaggtc ggctcaaata ttcatcgatc ccgtacgatg      4620
     gaaaacacca gctcttgtta cctgataagc atcaagtcac tctagcttta atacggaagc      4680
     tacacgaaga acatttgcac gttgggcaac gcggtttgtt gtctattgta cgtgagaggt      4740
     tctggccaat caacgcaaaa tcgttgatca agaaaacgat tgctacctgt tacgtttgct      4800
     gcagaaacaa tccacgacca tcgagtcagt atatgggaaa tctaccagac tatcgcatca      4860
     caccgtcgcc agtgtttgcg aacacaggag tggactacgc cggtccaatc gtattgaagg      4920
     aagctggaag aaaaacggtt ccgtacaagg catatattgc ggtgttcgtt tgtctggcga      4980
     ctaaggccat ccatcttgag gtggtttcta atttaaccac tgacaacttt atcgcggcct      5040
     tacagcgttt cgtaagtaga cgtggtatga taagcaacat ttactcggac aatggaacca      5100
     cgtttgttgg agcaaaccat gaattggctg cactgcgaac attatttgaa gatcagatcc      5160
     atcaaagaaa gctaaacgat ttttgcgtaa ccaaaggtat acagtggcac tttattcccc      5220
     cccggagtcc ccatttcggg ggcatctggg aagcaggtgt caaatcagca aaataccact      5280
     tgaaacgtgt ggtcggcgag actaagttga cgtacgaaga aatggctaca ttcctggctc      5340
     aaactgaagc tattttgaat agtcggccgc tcatcccggt atcagatgac ccaaacgacg      5400
     ttgaagtttt aacaccttcc cattttttaa ttggacgatc cgctgtgtgt cttccggaac      5460
     catcctacga ccaagagaaa atcggccggc tcagccgctg gcaacacgtc aacctgatga      5520
     aggagcattt ttggaaacgt tggtcagccg aatatttgca tcatcttcaa tcacgtccaa      5580
     agtggcacaa cggtatcacc aaatttgaag taggatcgct ggttgtgctc aaggatgaca      5640
     acaccccgcc ccaccaatgg cgtattggtc gcatacagac cactcatcca gggaaggatg      5700
     ggattgtgcg agtggttact ataaaaacat cgacaggaga gtatcgaaga gcagttacca      5760
     aggtgtgtgt acttccattg attgatccag aggaatcaac ggcgggagaa                 5810
//
ID   BEL-237_AA-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-237_AA_;
KW   BEL-237_AA-I; BEL-237_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-188
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 930-930 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 188 BP; 62 A; 41 C; 28 G; 57 T; 0 other;
     tgatcgctct acctgtgcca aatcgctaag cccctcgcct aacgataaat aagagaacaa        60
     aattgatgtt ttacttcagt gtattttttc tagtattaat aaagatgcag ttcagatcga       120
     acgcaattta tttcgattcg acgcaaatca cccgaaaacc aattctgact gagctatttc       180
     tataaaca                                                                188
//
ID   BEL-238_AA-I repbase;    DNA;    INV; 6888 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-238_AA_;
KW   BEL-238_AA-LTR; BEL-238_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6888
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 931-931 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5939-6499] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           555..3551
FT                 /product="BEL-238_AA-I_2p"
FT                 /translation="MPTRGYLKSGAKGDKGAKKVQPVTGDQCASGGDGGNP
FT                 EVVIIEETVEGHTCKTCEGADTEEMVQCDKCDGWFHFSCVGVSEEVADKSW
FT                 SCTNCVTAKWIQRTKTALEDSTIQRNQNLDRRSTRSQPVGDQPVGNIATST
FT                 RINPVIAPSCPQKPASVVHAEGRPADLTKMDQEKQQSVFPADDCLGVGSVN
FT                 REAAKALSDISVSSSQRSAVQRAKLQLMRLEEERQFQKQQEERRRAAEERA
FT                 AQEYREFLDKKYRLLEEVVSDRSSRSHSSTSSRVNDWVQKASQVQQTEPEA
FT                 NGLRIENLQVPTTSLVPAQSSGQFGQHRIRFESTAQTNSVNNVPTVQQFNQ
FT                 QQSRSAEQPKQQSRSAEQLFHSRFTSNQGFLATQVSQFAPPTRDPAQMNSA
FT                 PAPASQPFNSTSFEGPNLAPPACSTGVNHQNYRGSICASQGTYREEYQDEF
FT                 QLSRSQVAARQAVPRDLPTFTGNPEEWPIFLSMFNRTTMMCGFTEEENLVR
FT                 LQKSLKGKAYEAVKSRLMFPGNVAGILGTLKMLFGQPEVIIQSLIGKISSL
FT                 PSIREEKLESLVEFAVHVQNFCATVDACGMQEYMYNVSLLHQLVSKLPPSL
FT                 KLSWAQHRLTVPTVTLATFSTWIYSLAEAASVVTFASSAQPEKSSRTDARG
FT                 PKKGNAYLNTHSDSSLSEENEKVSPKEYSAGKPAQMKQVCPICKGTCRSAD
FT                 KCKRFLELCRDSRWAAIREFGFCRTCLRMHKGSCNAKPCGKNGCTFRHHEL
FT                 LHNDLKEKSQNPTASTSYESSPPDSPLPSSSGCNSHQTATCSVLFRYLPVI
FT                 LYGQTDVVETYAFLDEGSELTLLDQDLADKLELDGAERPLCLRWTGGTERC
FT                 EPNSRAYNLQISGIREGSQRFDLNDVRTVKDLMLPQQSLDMAQLSEKYPHL
FT                 RGLPIDSYRDVRPRILIGTKHAHLGLVMKNREGEFGQPIAVKSRLGWTICG
FT                 GGSGRGASLNYYSFHVCQCNTSSDDDLHQAMKNYFSLDSLGVTK"
FT   CDS           4040..6853
FT                 /product="BEL-238_AA-I_1p"
FT                 /translation="MFHQVLIRAEDQLSQCFYWMNDRGEAEVYAMQVMTFG
FT                 ACCSPSTAQFVKNTNAERFANEYPSAHHAITKCHYVDDMLVSVDTEEQAIE
FT                 LAKNVKYVHEQGGFEIRNWISNSRKVKTALQGEDTNEKSLDLFSELATEKV
FT                 LGMWWNTREDIFTYKVGWNRYDPALLGGQRRPTKREVLRVLMTIFDPLGLI
FT                 SNFLSYLKILLQQIWRSGVQWDEEIDSEAYDKWLVWLKVLPRVEQVRIPRC
FT                 YNSQDLMNETDEVQLHTMVDASENGIAAVCYLRFVKHESIRCSIVSAKTRV
FT                 APLKFISIPRLELEAAVIGARLARSVEASLTIEIHRKLFWSDSRDVLCWIN
FT                 SDHRRYSQYVGHRISEVLEISEAHEWRWVPGKLNSADDATKWNTLPELSSE
FT                 DRWFKGSEFLWCTEDKWPKSPDRKSTTENELRPSLLLHHVLPEPVICVTNF
FT                 STWERLCKVIAYVHRFASNCRKKGMESLITTGPLTANELFMSERTLIRLAQ
FT                 SESYPDEVMLLRKPSDLSSEVIPKTSTLYQLTPWLDSNGILRMRTRIAACD
FT                 YATDDAKNPIILARKHPTTSLIIDHYHRKYHHLNHETVINEIRQKFRIPHL
FT                 RTCYKQVRSNCQMCKNQHAVPQAPYMADLPPSRLAAFTRPFTHVGIDCFGP
FT                 IEVVVGRRVEKRWGMLVTCLTVRAIHVEVLHSLSSSSCIMALRNFMARRGT
FT                 PQTVHSDRGTNFVGANRELLQTSEAINEDEFMKEFANRGIEWVFNPPLSPH
FT                 MGGSWERLIRTIKNNLKVVCSSRRLSDEVLRNLLAEVENIINSRPLSHVPI
FT                 DEDSAPALTPNHFLLGSSNGTKPLSNLDDSGEALRQNWTTSQILANQFWRR
FT                 WISDYLPEITRRTKWFKRSKPISVGDVVIIVDPKMPRNCWPMGKIIATKIS
FT                 MDGQVRSATVRTANGVYDRPATKLAVLDVRCAEK"
XX
SQ   Sequence 6888 BP; 1972 A; 1630 C; 1652 G; 1632 T; 2 other;
     aggattagtt gaattatgtg cttattattg gatttgtatt agattgcatt acaaaaccag        60
     atcactccaa ggcagaaacc aaccgtgcat ctacttggat tacctacgta agagcattgg       120
     tgagaagtga gtttgctaaa cctatagatt gcctaaacta actactaaat tatacagcag       180
     cagcacccaa atacgagttg aaatccaccc aaattacgaa taggaactgc acgaaaggaa       240
     ctaaacgtga gtagaagaag caatattccc tattaagaaa ctacagcata agcaatcccc       300
     catcagttcg gatatatcga acaggggttt ccatcaccgg cttcgcggtg cactatataa       360
     aagaaatgaa attgtagaaa tgccaaacta atagttcgta tgtattcaat accattcata       420
     ggaaaattat attctcccat tcatcggatc acgtgtttca ttcgtttccg gtacggagaa       480
     ttacgatttt ggaagttccg ttgaatcaag attcaacagc atataatttt cgtttattga       540
     acgaaacgag agtaatgcct actcgcggtt accttaagtc gggtgcgaag ggggataagg       600
     gtgcaaagaa ggttcagcca gtgactggtg atcaatgtgc tagtggtggt gatggtggta       660
     atcctgaagt ggtgatcata gaggaaactg tggaaggaca tacgtgtaag acgtgcgaag       720
     gagcggacac cgaagagatg gttcaatgcg ataaatgcga tggatggttt catttctcgt       780
     gtgtgggagt atcggaagaa gttgctgaca agagctggag ttgcactaac tgcgtcaccg       840
     cgaaatggat ccagcgaact aagacagctt tggaagacag taccatacag aggaaccaga       900
     acctagatcg taggtcgact aggagccagc cggtcggaga tcagccggtc ggaaacatcg       960
     caacaagcac ccgcatcaat ccagtgattg ctccgtcgtg tccccaaaag ccagcctcgg      1020
     tagtgcatgc tgagggtaga ccagccgatc ttacaaagat ggatcaagag aagcaacagt      1080
     cggtatttcc agccgacgat tgtctaggtg ttggttctgt gaatcgagaa gcagcaaagg      1140
     cactttctga catttccgtt tcctcatcac aaagatcagc cgtgcagcgt gcgaaactgc      1200
     agttgatgcg actggaagaa gaacgacagt tccagaaaca gcaagaagaa cgtcgtcgtg      1260
     ctgctgaaga aagagcggcg caggaatatc gagagtttct tgacaagaag taccgtcttc      1320
     tggaagaagt cgttagtgat aggagttcga ggagccacag ctcaacatca agtcgtgtca      1380
     acgattgggt acagaaggcc agtcaagtgc agcagactga accagaagca aatgggcttc      1440
     gcatcgagaa tctacaggtt cccacgacca gcttggtacc agcccaatcg tctggacagt      1500
     tcggacaaca tcgaattcga ttcgaatcaa ctgcccagac taattctgtc aataacgtgc      1560
     cgactgtcca acagttcaac caacagcagt cccgttcagc agagcaaccg aaacagcagt      1620
     cccgttcagc agagcaactg tttcactcca gattcaccag caatcagggc tttctggcaa      1680
     cacaagtaag ccaattcgcg ccaccgacta gagatccagc tcaaatgaat tccgcgccgg      1740
     caccagcgtc gcagccattc aactctacat ccttcgaagg gccgaatttg gcgccaccgg      1800
     cgtgttctac cggtgtcaat catcaaaact atcggggaag catctgtgct tcccaaggaa      1860
     catatcgaga agagtatcag gacgaatttc aactttctcg ctctcaagtg gcagctagac      1920
     aagcagttcc gagagattta ccaacgttta ctggtaaccc ggaagaatgg ccaatctttc      1980
     tatcaatgtt taatcgtacg actatgatgt gcggattcac tgaagaggaa aaccttgttc      2040
     gactgcaaaa gagtttaaaa ggcaaggcct atgaagccgt aaagagccgc ctcatgttcc      2100
     ctgggaatgt agccggtatt ctcggaaccc tgaaaatgct gtttggacaa cccgaagtta      2160
     ttattcaatc tctgatcggg aaaattagtt ctctaccttc gattcgagaa gaaaagctgg      2220
     agtcattagt cgaatttgct gtacatgtgc aaaacttctg cgctacagta gatgcctgcg      2280
     gaatgcagga gtatatgtac aacgtctctc tacttcatca gctggtcagc aagctacccc      2340
     cttcgctcaa actcagttgg gcgcagcacc gtctaacggt gccgacggtc accttagcga      2400
     ccttcagtac gtggatctac tctctagcgg aagcggcgag cgtcgtcacc tttgcatcat      2460
     cagcgcaacc cgaaaagtct tctcgaaccg acgcacgtgg acctaagaaa gggaacgcgt      2520
     acctcaatac acattcagat tcatctttat ccgaagaaaa cgaaaaggtt tctccgaagg      2580
     aatactctgc aggaaagccg gcgcagatga agcaagtttg cccaatttgt aaagggacct      2640
     gtaggtctgc tgacaagtgt aagcgcttct tggagctttg cagggattca agatgggccg      2700
     ctataaggga atttggattc tgccgcacct gtctacggat gcacaaagga agctgcaatg      2760
     ccaagccgtg cggcaaaaac ggatgtacct ttcgacatca cgagttgttg cacaacgact      2820
     taaaagaaaa gtcccaaaac ccaacagcct ccaccagtta cgaaagctca ccacctgatt      2880
     caccccttcc tagttcatct ggctgcaata gtcatcagac agctacctgt tccgttctgt      2940
     ttcgatacct tcctgtaatt ttgtatggtc aaacggacgt agtggagact tacgctttcc      3000
     tggatgaggg ttcagaactt actttactcg atcaagacct cgctgataaa cttgagttgg      3060
     atggtgccga acgtccatta tgtctccgat ggactggagg aactgaacga tgtgaaccta      3120
     actctagagc ttacaatctt caaatttccg gaatcagaga aggaagtcaa cgattcgatc      3180
     tgaacgacgt acgaacagtg aaggatctga tgttgcctca acaatcgttg gacatggctc      3240
     aattgtcgga aaagtatccg caccttcgtg gtttgcccat tgattcgtac cgtgatgttc      3300
     gaccgcgtat tctcatagga acaaagcatg cccatcttgg cctcgtcatg aaaaaccgtg      3360
     agggagaatt cggacagccg attgccgtta agtctcgact tggatggacc atctgcggag      3420
     gaggatctgg acgtggagca agtttgaact actacagctt tcacgtctgt cagtgtaaca      3480
     cttcttcaga cgatgatctt caccaggcaa tgaaaaacta cttttcgctc gatagccttg      3540
     gtgtaacgaa awccgataaa ctgctcctac ccgtcgaaga tcagcgtgcc ctgtcaatgc      3600
     ttcagtctct taccaatcgt aaggatgacc gttacgaatc cggtttgcta tggcgttacg      3660
     acgatacacg tctgccggat agccgatcta tggcattgcg ccgatttcaa tgtctgaaaa      3720
     aacggatgga gagagacacg cagctgcagg aagttctgaa atctaaaatt gtggaatatt      3780
     tagcgaaagg ctacattgga aactcagtga ggaggaaatc attcagcagg tccctcgccg      3840
     ttggtattta ccagtatttc ccgtaacaaa tccaaataag cctggaaaag tacgtttagt      3900
     atgggacgca gcagcaagcg cttacggtac gtcmctcaac tctgcgcttt tgaaaggacc      3960
     ggacctactt tgttcccttt tcacgatcct gcttcgattc cgagaacgcc gtatcggact      4020
     aaccggtgat attcgtgaga tgtttcatca agtgctgatt cgagcagaag accagttgag      4080
     tcagtgtttc tactggatga atgatcgtgg tgaagccgaa gtatatgcta tgcaagtaat      4140
     gacgttcgga gcatgttgct ctcccagcac tgcacagttc gtgaagaaca ctaacgccga      4200
     gcggtttgca aacgaatatc catctgcaca tcatgccatc acaaaatgtc attacgtcga      4260
     cgacatgctc gttagcgtag atacggaaga gcaggccata gagttagcta agaacgtgaa      4320
     gtacgtccac gaacagggtg gttttgagat ccggaactgg atcagcaact cgcgaaaagt      4380
     taagacagcg ctacaaggag aggataccaa tgaaaaatct ttggacctgt tctctgagct      4440
     ggccactgaa aaggtgttgg gcatgtggtg gaacacgaga gaagacattt tcacctataa      4500
     ggttggatgg aaccgctacg atccagctct attaggaggt caacggcggc caacgaagcg      4560
     ggaagttctt agggtattga tgacaatttt tgatccgctg ggattgattt ccaacttcct      4620
     gtcataccta aagattctgc ttcaacagat ctggaggtcc ggtgtacaat gggatgaaga      4680
     aattgatagt gaagcatacg ataaatggct agtctggcta aaagtgcttc cacgtgtgga      4740
     acaagtgcgc attccacgat gctacaactc tcaggacctt atgaacgaaa ccgacgaagt      4800
     ccagctccat accatggtgg atgccagcga gaacggaata gccgcagtat gttatctacg      4860
     ttttgtcaaa cacgaatcta ttcgctgctc catcgtttcg gcgaaaacca gagttgctcc      4920
     actcaagttc atatctatac caagactgga actcgaagct gctgtgattg gtgcccgtct      4980
     agcacgatcc gtcgaagcct ctctgaccat cgagattcac agaaagctgt tttggtccga      5040
     ttccagggat gtcctctgct ggatcaactc tgaccaccgt cgctatagcc aatatgtagg      5100
     ccatagaata agtgaagtcc tcgaaatttc tgaagcacat gaatggcgat gggttccagg      5160
     taaactaaac tccgctgacg atgctacgaa gtggaatact ctacccgagt tgtcatccga      5220
     agataggtgg ttcaagggct ccgaattcct ttggtgcacc gaagacaaat ggccaaagtc      5280
     tccagatcgc aaaagcacca ccgaaaatga gctgcgtcct tcactcctgc tacaccacgt      5340
     tttgccggaa ccagttatct gcgtcacgaa tttctcgaca tgggaaagac tgtgcaaggt      5400
     catcgcatac gtccatcgat ttgcttcaaa ctgtcgtaaa aaaggcatgg aaagcttgat      5460
     taccacaggt cctcttacgg ccaacgagtt attcatgtcc gagcgtacac tgatacgact      5520
     cgctcaaagt gaatcttacc ccgacgaagt aatgctactt cgcaagccat ccgatctatc      5580
     ttcagaggtc attccgaaaa ccagtacact gtatcaacta acaccatggt tggatagcaa      5640
     cggaatatta cggatgcgaa cccgcatcgc tgcctgcgac tacgccacgg acgatgccaa      5700
     gaacccaatc attctcgcaa gaaaacatcc cactactagc ctgatcatag accattatca      5760
     ccgaaaatac catcacctca atcatgaaac ggtgattaat gaaattcggc agaaattccg      5820
     tattcctcat ctacgtactt gttacaaaca agtgcgtagt aactgccaga tgtgcaaaaa      5880
     ccagcacgcg gtaccacaag caccatacat ggccgacctt ccaccctccc gcttagcagc      5940
     ttttacacga ccgttcactc atgttggcat cgactgtttc ggaccgatcg aagtcgttgt      6000
     cggaagacga gtggagaaac gctggggaat gctggttaca tgcttgaccg ttcgagcgat      6060
     ccatgtagaa gtattacatt cgctcagctc gagttcatgc atcatggcgc tccgaaattt      6120
     catggcacga cgtggaaccc cccaaacagt ccacagtgac cgaggaacaa actttgtggg      6180
     cgcgaatcga gagttgctgc aaacgagcga agctatcaac gaagacgagt tcatgaaaga      6240
     gtttgccaat cgtgggattg agtgggtttt taatccgcct ctctcaccgc acatgggcgg      6300
     aagttgggaa cggttgatac gcaccatcaa gaacaaccta aaagtagtgt gttcttcgag      6360
     gaggctgtct gacgaagtgc tccgaaattt gctagcagag gttgagaaca taataaattc      6420
     acgcccgcta tctcacgttc cgatagacga agactccgcc ccggcgctga caccaaatca      6480
     ctttttactt ggttcttcaa atggaacaaa gccactcagt aatcttgatg atagtggtga      6540
     agcgcttcga cagaactgga caacatcaca gattctggca aaccaatttt ggagacgttg      6600
     gatctctgat tatcttccag agatcacccg gagaacaaag tggtttaaac gatctaaacc      6660
     aatttctgtc ggagatgtag ttatcatagt ggacccaaag atgccacgca actgttggcc      6720
     gatgggaaag attattgcaa ctaagatcag catggatgga caagttcggt cggcaactgt      6780
     gagaacggca aatggagtgt atgatcgccc cgctacaaag ctggcggttt tggacgtacg      6840
     gtgcgccgaa aagtaagcca acttgagagt tggcatacct ggggggag                   6888
//
ID   BEL-238_AA-LTR repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-238_AA_;
KW   BEL-238_AA-I; BEL-238_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-432
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 932-932 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 432 BP; 149 A; 77 C; 81 G; 125 T; 0 other;
     tgttagctga cgcagtattc acgcatcttc cgtccagacc ttaatcattg ggactcatca        60
     accggtgagt ggatgccgat aagggtgttc gctatcaccc agtgagtacc gaactagatg       120
     taaacacata aagaagctga gaatagtaat agaaagcaaa aattgataaa tctccataag       180
     ctaatagcaa gtcattggta gcgtgaaatc ttttgctaaa atattgaatt cctagtaaaa       240
     caataagttc taaattagtt atttaagtgc caaataagct gcgtgtgtta aattcataga       300
     ttaggtaagc agaatgtctt caaaccaacc ctacatcaac taaaattgtg ttttataaac       360
     caggtcttcg catgtgcttc gataataggc aattactgta ttatcctatt gtaccggtaa       420
     ggaaatgtaa ca                                                           432
//
ID   BEL-239_AA-I repbase;    DNA;    INV; 5432 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-239_AA_;
KW   BEL-239_AA-LTR; BEL-239_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5432
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 933-933 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4400-4972] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(125..1591,1595..5341)
FT                 /product="BEL-239_AA-I_1p"
FT                 /translation="MEKKKEPMRQQAELSESASASHISKSERVRNWITSQQ
FT                 IDKEDKGKIQLGMSNSRIARPASPQRLNAPLLATAYPTPQFSNLSLRDDDR
FT                 CIGNPELPTTYMQIAARQVTGKDLPVFSGSPENWPMFIRIYEETTAACGFS
FT                 DVENLVRLQKCLRGNALETVRSRLMMPAGVPHVIKTLQMRFGRPELIIRSL
FT                 LDRVRHVPAPKPERLDTLIDFGLAVENLVVHLQAAKQENHLTNPVLLQELV
FT                 MKLPAQLRLDWARYELIHQDPTLAAFGTFMNELIQAASEVSFELPISLSAR
FT                 SEKPKDREKVFVHAHDSPDMETKPTGVVKKFPKPCIVCSVVGHRIVECEEF
FT                 KAKSIDDRLKIVRQNNLCRTCLNFHQKWPCRTWNGCNIEGCREKHHSLLHS
FT                 PISSNCVHLSTNHNYILDDDCVRYPYFRILPVVVSMDNKRQLIFAFIDEGS
FT                 SSTLLDRSVAEQLGLEGPTEPVTLQWTANVARQESKSKRVNLQIAAGNTST
FT                 FQINGAHTVEQLLLPKQSVPYSALVKQYPHLGGLPIADYEQAEPKMLIGLD
FT                 NLSLCVPLKIREGRYNEPIAAKCRLGWAIYGFRTGAPMPTVSINFHVPAAQ
FT                 DADHELNEQLNDFFSLDKLGSTSTFEIPESEAVKRARKLLQETTRRVSTRF
FT                 ETGLLWKSDTIEFPDSFPMASKRLELLERKLSRNSSLQGQVHQKIAEYVAK
FT                 GYCHRASLEELNSSDSKRVWYLPLCVVVNPKKPNKVRVVWDAAAKVNGVSF
FT                 NSALLKGPDLLTSLTSILYHFREYRIAVTGDIEEMFLRILIRPEDSSSQRF
FT                 LWRENPGDNPSVYIIDVATFGSTCSPSSAQFVKNANAKDYREKFPRASSAI
FT                 IKYHYVDDYLDSFDTVEEAIEVVKQVKSIHSEGGFNLRHFLSNSNDVVLAV
FT                 SEAIGNDSDEDTKQFNIVRDEKIESVLGMKWNPSRDVFVYTLSLRDDLIVI
FT                 INPSHTPSKREMLKLVMSLFDPLGFLAFYLIHGRILIQDVWATGVDWDTPV
FT                 NSELAQRWWQRISFLPSLNKVQIPRCYFHGYMDNSKQLHVFVDASDAAYAC
FT                 VAYLRAVGTAGVELAIVGAKSKVAPLKVLSVPRLELMAAVIGARMVESVVT
FT                 SHSYTITDVFLWSDSSTVLAWINSDHRKYHKFVGVRIGEILALTKINQWRW
FT                 LPTKQNPADEATKWGDGPEFSSNSRWFRGPPFLYQTESEWPESRISSSTEE
FT                 ESINGRHTVHQNSHQAIPTSIIDFSRFHKWERLLRTQAYVIRFVNNVGSRR
FT                 NGKHVEKGTLTQNELKHAERQLWKQAQAEFYYQERGVLLETQGSPAARHNV
FT                 VHKASPIYKLWPYIDEDGVMRMRGRIGAAWYATPDAKYPVILPKTHPISSL
FT                 LVDWYHRRYNHANHETVVNEMRQRYEIPTLRVLVKQTSKSCFKCRIANATP
FT                 CPPPMAPLPEQRLTPFVRPFTFVGLDYFGPLIVKVGRSEVKRWVALFTCLT
FT                 VRAVHLEVVHSLSSESCVMAVRRFIARRGTPAEFFSDNGTSFVGANKQLQR
FT                 EIASRNEVLSSTFTNTNTRWHFNPPGAPHMGGAWERLVRSVKSAIGMIIDT
FT                 PRRPTDEVLETILLDAEAMINSRPLTYIPLDTADEESLTPNHFLLGNSSGV
FT                 KQPMMEMKEYRTNLRSCWALAQHITDTIWKRWIKEYLPVITRRCKWFEEVR
FT                 DIQEGDLVLMIGTAMRNQYIRGRVEKVFIGRDGRVRQALVRTATGVYRRPV
FT                 AKLALLDVEVSGKRGPDT"
XX
SQ   Sequence 5432 BP; 1556 A; 1212 C; 1303 G; 1356 T; 5 other;
     atwcatgtaa cttamttgga atatgaagaa aatgttgatg gaagaagaga caaagctccg        60
     agaagcggag ttgtcgaagc aaaaagcttt acaggagaag ataatgkttt tkagacggga       120
     atcgatggag aagaagaagg agccaatgcg acagcaggcg gagttgagtg aatcggcgtc       180
     ggcgtcgcat atttcgaagt ccgaaagggt gagaaactgg atcacgtcac agcagatcga       240
     taaggaagat aagggtaaaa tacaacttgg aatgtcgaac tctcgcatag ccaggccagc       300
     ttctccacaa agactaaatg ctcctctact agccactgcc tatccaacgc cacagttctc       360
     taatctttcg ttgcgtgatg atgatcgttg catcgggaat ccggagttac ccacgacgta       420
     tatgcaaatc gctgcccgac aagtaacggg caaggacctt ccggttttca gcggtagccc       480
     ggaaaactgg ccgatgttta ttcggatcta cgaagaaacg actgcagctt gcggattctc       540
     agatgtagag aatttagtac gccttcagaa gtgtttgcgc ggaaatgccc ttgaaaccgt       600
     gcgaagccga cttatgatgc ctgcgggagt gccgcatgta atcaaaaccc tccaaatgcg       660
     tttcggtaga ccggaattaa ttatccgttc tctactagat cgagtgcggc atgttcccgc       720
     tcctaagccg gaacggctcg atactctaat cgactttggc ttagccgtgg agaatcttgt       780
     agtccatttg caagcggcga aacaggaaaa tcacttaaca aatcctgtct tactgcaaga       840
     gttggtcatg aagctgcctg ctcagcttag attggattgg gccagatacg aactcatcca       900
     tcaagaccct acccttgcag catttggcac cttcatgaac gaacttattc aagcagcgag       960
     tgaagtgtcg ttcgagttac cgatcagcct atcagcgaga tccgagaagc caaaagacag      1020
     agaaaaagtt tttgtacatg ctcacgactc ccccgatatg gaaaccaaac ctaccggtgt      1080
     agtgaagaag tttcccaagc catgtattgt atgcagtgta gtagggcacc gtattgtgga      1140
     atgtgaagaa ttcaaagcaa aaagcattga tgatcgcctg aaaatagtac gacagaacaa      1200
     cttgtgccgt acctgcttaa atttccacca gaagtggccc tgtcgaacat ggaatggctg      1260
     taacatcgaa ggctgtcgcg aaaaacatca ctccctgcta cattcaccaa tttcttctaa      1320
     ctgtgtacac ctttcgacaa accacaacta tatattggac gatgactgtg ttcgttatcc      1380
     atattttcgc atactcccag tggttgtatc catggacaat aagcgacaat tgatatttgc      1440
     gttcattgat gaaggatcct catctacact tttggaccga tctgtggcag aacagctggg      1500
     attagaagga ccaacagagc ctgtgacgtt gcaatggacg gccaacgtcg ctcgacaaga      1560
     atcgaaatcg aaaagggtga acttacaaat tkcggcggct ggaaatacta gtacattcca      1620
     gatcaatgga gctcatacgg ttgagcagct tctattgccg aagcaatcag tcccatatag      1680
     cgcattagta aagcaatatc cacatttggg cggattaccc atcgctgatt atgagcaggc      1740
     cgagccgaaa atgttgattg gacttgataa ccttagtctg tgcgtacccc ttaaaatacg      1800
     cgaagggcgt tataacgaac ctattgctgc gaaatgtagg ctaggctggg cgatttatgg      1860
     gttcagaact ggtgcaccga tgcctacggt gtcgattaat ttccatgtac cagccgccca      1920
     agacgcagac cacgaattga atgagcaact gaatgacttc ttctcattgg ataaattggg      1980
     gtctacatct acgttcgaga tacctgagtc cgaagctgtt aaaagagcta gaaagttgtt      2040
     gcaggaaacg acgcgtagag tttccactag attcgaaacc ggtttattat ggaaatctga      2100
     caccattgag tttcctgata gttttccgat ggcaagcaaa cgacttgaat tgttagagag      2160
     aaagttgtct agaaattcat ctcttcaagg tcaagttcat cagaaaatag cggagtatgt      2220
     ggcgaaagga tactgtcatc gggctagtct tgaggaactg aactcgtcgg acagtaagcg      2280
     tgtatggtat ctcccgttgt gcgttgttgt aaacccaaaa aagccaaata aggttcgtgt      2340
     tgtgtgggac gctgcggcaa aagtaaacgg tgtatcgttc aattccgcgt tgctaaaagg      2400
     cccagaccta ttgacgagcc ttacctctat tctataccat tttcgtgaat acagaattgc      2460
     cgtgaccggg gacattgaag aaatgtttct ccgaattctc atccgaccag aagacagtag      2520
     ttcgcaacgg tttctatgga gggagaatcc tggcgacaat ccttcggtat acattatcga      2580
     cgtggcgacc tttgggtcga cttgttcccc aagctcggcg caatttgtta aaaatgcgaa      2640
     tgcaaaagac tatcgagaga aatttccccg ggcttcctca gcaatcatca aatatcatta      2700
     cgtagatgat taccttgata gttttgatac ggtagaagaa gccatcgagg tagttaagca      2760
     ggtgaagtca attcactccg agggaggttt caacctgcgc cattttttgt ccaactccaa      2820
     tgatgttgta ttggcagtca gcgaagcaat tggcaatgat agcgacgaag atactaagca      2880
     attcaacata gtacgagatg agaagataga atccgtacta ggaatgaagt ggaatccatc      2940
     cagagatgta tttgtctaca cgttatcgct ccgtgacgat ctaatcgtca ttataaatcc      3000
     ctcacacact cctagtaagc gagaaatgct caagctcgtc atgagcctct tcgaccctct      3060
     aggtttcttg gcattttacc tgatacacgg gagaatttta attcaagatg tttgggctac      3120
     tggcgttgat tgggacacac cagtaaacag tgaattagct caaagatggt ggcaacggat      3180
     cagcttcttg ccatcgctca acaaggtgca aatcccccgc tgctattttc atggttatat      3240
     ggataattca aagcagcttc acgttttcgt ggatgcgagc gatgctgcgt atgcttgtgt      3300
     cgcctacctg cgcgcagttg gaacagcagg agtggagttg gcaattgtgg gcgcgaaaag      3360
     taaggtagcg cctctcaaag ttctgtctgt ccctcgctta gaattgatgg cagcggtaat      3420
     cggtgctcgg atggtagaat ctgtcgttac ttctcattca tacaccataa ccgacgtatt      3480
     cctctggtct gactcatcaa cagttcttgc ctggatcaat tcggatcacc gaaagtacca      3540
     taaattcgta ggagtcagga ttggagaaat tcttgcgttg acaaaaataa atcaatggag      3600
     atggttgccc accaaacaaa acccagctga tgaggcaacc aagtggggag atggacccga      3660
     attcagttcc aatagtcgat ggtttcgtgg gccgcctttt ctctaccaaa cagaatctga      3720
     atggcccgaa agtcggatat cgtcttctac tgaagaggaa tcaataaatg gtcgccatac      3780
     cgtccatcag aacagccacc aagcaatccc cacatcaata atagactttt cgcgttttca      3840
     taaatgggaa cgattgctta gaacgcaagc ttacgtaata cggttcgtca acaatgttgg      3900
     tagtcgcaga aatgggaaac atgttgaaaa gggaacacta acgcagaatg agttaaaaca      3960
     cgccgaacga cagctttgga aacaggctca agcagaattt tactatcagg agcgaggtgt      4020
     actgctggaa acccaaggga gtccggccgc tcgtcataat gtggtacata aagcaagtcc      4080
     aatctacaag ttgtggccat acattgacga agacggcgta atgcgaatgc gaggaagaat      4140
     aggagcagca tggtacgcta cacccgatgc caagtatcca gttatacttc caaaaaccca      4200
     tcctatttct tcactactgg tagattggta tcaccgacgt tataatcatg ccaatcatga      4260
     gacggtggtg aatgaaatga gacaacgcta cgaaatacca acgctacgag tgctagtgaa      4320
     acaaacttca aaaagttgct tcaagtgtcg aatagcaaat gcgactcctt gtccaccacc      4380
     aatggcacca cttccagaac aacgtttaac accctttgtg agaccattca catttgtcgg      4440
     tttggattat ttcggtcctt taatagtcaa agtcggtcgc tctgaagtca aacgatgggt      4500
     ggctctattc acgtgcctca cggtgcgtgc tgtacatctc gaggtagtac atagtctatc      4560
     cagcgaatca tgtgtgatgg ctgttcgacg cttcattgcc cgccgcggta caccggcgga      4620
     gtttttcagc gacaacggga cgagctttgt aggtgcaaat aaacagttac agcgagaaat      4680
     agcgtcaaga aatgaagttc tttccagcac tttcacaaat accaacacaa gatggcattt      4740
     caatccgccc ggtgcccccc atatgggcgg agcatgggag cgattagttc gctctgtcaa      4800
     aagtgccatt ggaatgatta tcgacacacc tcgtcgtcca acagatgaag tgctggaaac      4860
     gatcctattg gacgccgaag ctatgataaa ttctcggcct cttacctaca tacctctgga      4920
     cactgcagac gaagaatctt tgactcctaa ccatttcctt ttggggaatt cttctggcgt      4980
     taaacaaccg atgatggaaa tgaaggagta tcgaactaat ctgcgaagct gttgggcact      5040
     agctcaacat atcaccgata ctatttggaa gcgatggata aaagaatatt tacccgttat      5100
     aacccgtcgt tgcaaatggt tcgaagaagt ccgggatatc caggaaggcg atttagtgct      5160
     aatgattgga acagcgatga ggaaccaata tataaggggc cgcgtggaaa aggtgtttat      5220
     cggacgagat ggtcgagtgc gtcaggcttt ggtgcggacc gctactggag tatataggag      5280
     acctgtcgct aagcttgcac tactcgacgt tgaagtatct ggtaaacgtg gtccagacac      5340
     atagacccgc ctattcttga ccatccttta cgggtggggg gatgttacgt cgcatagcaa      5400
     gcccctcgac tggtcacact gtccgaatcg tg                                    5432
//
ID   BEL-239_AA-LTR repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-239_AA_;
KW   BEL-239_AA-I; BEL-239_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-509
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 934-934 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 509 BP; 183 A; 70 C; 92 G; 148 T; 16 other;
     tggtcgatca gcagagcccg atgacaktgt acagtataga agaacacaaa amaggaagaa        60
     ckatatgtca gatgataatg atttgcaaaa gtaaaggttk aagtgaattg agaagaattg       120
     atgctagaak tgatttatta taattattga agtgcctatt gattacatwt tattaacagw       180
     taaatacgat tcgtattcgg taagataatt twattgaact tttccttgtt gcataattaa       240
     cgtggmcatg aactatattt agagttagca agttgcaaac atttgcccac attggattta       300
     kcttttkcga agattactag gmgatataag cccaagagta agtcagatag ttagtattcc       360
     taaaattaat aataattgaa actawttaac taaactgaat tcaatwtaac taggcaaaat       420
     ctaattgcca taaggatcgt gccgtacgca acggagaagt gtatcaccta acctgttttt       480
     cgmggwagaa caccaaaatt gtaagcaca                                         509
//
ID   BEL-23B_DTa-I repbase;    DNA;    INV; 3850 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23B_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3850
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5633-5633 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 3850 BP; 1504 A; 566 C; 675 G; 1089 T; 16 other;
     ttttggtcct tcgacaactc tgcagttttc ccccaccagt ggtaagagac tcagaactta        60
     ggccagcacc taaaaaataa aatctgtaac acttgcagtt tttgtttaag gtgttaatga       120
     atagttgact cttgttatcc cccaccagtg gtaagaaaca gagtaaaaaa ttaataaaaa       180
     tcaaaaagat ataaaagaat cttttctgat ttaataaaaa atttattcaa ctatagtatt       240
     acaacaaaaa gtcaaaattt gttgtaaaag tggtcgaaaa atcgacaaat taataataaa       300
     aataattctt gccaccgagc aaatatattt tttgggcgtt ttcgaggcct ttttaaacat       360
     cgaaaaagtg atttaataaa tcaggcgtat tcgaggccga catcgaaaaa gtgttcacgt       420
     tatcacagtg aaataaatta aaagtgactc ccgattttgg caacaaaaat tactcccgaa       480
     tttaatgaca aataattaaa taaaaataaa tgtattcaaa agaaatacaa ataataaaat       540
     aaagtgactc ccaaaagaaa aaaaaaaacc taaatcatct gtaaatcatc tgtaaatcat       600
     ctgtaaatca tcatcaaaac ggcaataagg actccaggac ttcaagcgag gacagcatcg       660
     gaacatataa catcgaagtt tcagcagcga cgacagcagc ggcaaccata aaatataaat       720
     aggatcagat aagtcctatm wwtcataatt aaataattga aaattwtwtt wttacaaata       780
     wtaatattat awaagttgtc ggtwatttaa gtcggttaaw awaagatwta taaaaaaaaa       840
     aaaaatgttg tccgagcaaa cwatcgcact aataaaaagg caggtggaga ttaccaacgc       900
     cagtaaggcg ctggaagatc tcccaagctt atcatttgaa tacttgaaga aatttgatga       960
     gctaaaggcc gagtgcatcg aaaatcacaa agckcttatg catattggag tagtcgmsca      1020
     tgactacttc actaagagtc attacgagca aatgctctcg atttttaata gaattaaaat      1080
     aagaatagat acagtgttag ctgaatccga taagtccgat ggtaaattaa tggtaaaaga      1140
     gcagaatata gaaaaaagtg taaactgcga aagccagtta gatacagcta tagagcagtt      1200
     agaaaggtat ttaaaagata catttgagga tattcaagat gataaaataa aaacatttga      1260
     aattaggata gggaagctta atttttattg ggataagata gttgccatga agcagggaaa      1320
     cactacggac gtcacgatta gaagatataa tgatatattg gaggaattag cgttcgatat      1380
     ttccatggtt accaaagaca tgagaaaaaa actagaggaa attgtgccaa aaaaggtaga      1440
     agttgcaaat cataaaattg atgatttgcc aacgctgcct aaaattcagg tacccacatt      1500
     ttatggagat tccaaagatt gggacctatt ttatgagtta ttcaatgaac tcatacattt      1560
     aagggaagat ctcagtccta ccttgaaatt taattacctc aaaatctcac ttaagggaga      1620
     agccaggaat gtggtttccc acttattgtt gggatcaggg gaaaattatg aggccgcttg      1680
     ggaactgtta accaagcggt acgaaaataa aagaaaaata ttttctgatc aacttaatcg      1740
     ccttcttgac ctccaaaatg taaatattga ctcggttcgg caattaagaa tgtttattga      1800
     cactataaat gagtcaattt acataattaa attaaaggca caaatttctg acgaaattga      1860
     cataatcttt gctcaaatta ttattaaaaa atttggtaaa gaggctctgc aattatatga      1920
     gagccaggtt aaaaaaacaa aagaaattca agttctttcc gacgtccttg aatttttaga      1980
     gcaacgacta agttcaataa gctcttttca ggatgcaagg cctgttaaaa aagtatttag      2040
     tatcaatgta agcccattat atactaaaag gtgtcctatt tgcaaaggtg tgggacacac      2100
     attatttcaa tgtcacatat ttaaggcgtt aaatccatct gaaagaatgg agcaagccaa      2160
     aaaagcacag ttgtgtttta aatgtttaaa acacacattt aataaaaaat gtcccagcgg      2220
     tatttcgtgt tttatatgta agaaaaatca tcacagcatg attcatataa attatagtaa      2280
     caaccaaaaa aataaaaagg ttataaagaa tatgacgtcg gaacaagtgt tgttagctac      2340
     agcacaagtt caaattaaat cttctaaagg aggattcgaa aagtttaggt ctttgattga      2400
     cagtggttct caaagcacaa taatttctga agcagctgtt cggattttaa aactaccgct      2460
     tattcgatct caaaaggaga ccagtggagt atcgtccaca ggaaagtgca tctcgaagca      2520
     caaagtaaat cttttaatca aaagtaaaag ttcagaaaaa accatgaaag tggaagctat      2580
     tgtacttcct aaagtaataa gtaatcttcc gatcaacaca gtcaatgttg acaaatcgaa      2640
     atgggagaac cttaatttag ctgaccctga atttgataag tcggggcggg tggatctgat      2700
     cattggatca gatatataca ctcacattct gcagagtgga gttgttaaaa aagatgggct      2760
     cctaggacaa aaaactgatt tcgggtggat tgtctctgga tgtcaaaaat ccaatgcaaa      2820
     aaagactata gtagggacaa ctattaattt taacgatttg gataaatgtc ggaatttaaa      2880
     aggaaaaaat aaaaataaca gtaattttat tcccccggca ggacctcact tcggaggtaa      2940
     tggtaaagtt gacgttagtt cagctacgaa gaagaatagt cctaatgtag tgaaaggaca      3000
     ggttgtccta gtacgagatc agacttccta tttaacaaag tggttgatgg gaaaagtggt      3060
     tcaggtccgt ataggaaaag gcaaagaaac agtaaaagtt aaattgcaaa atggttttat      3120
     aaaaagaact ataagccaaa tttatccact agacaaatta aagtctggaa ataaagtaga      3180
     gtttgatcct agaaaaatat gacaaattag gaaatttgga gactagggtt ttatctagac      3240
     tagatagtta ctttgatttc attcattggt aaaagtttca ggtgcactcc aaaatgttgc      3300
     agagtgtatt taaaaagtta agtagttgtc agcttaagcg ttttcttgtt taattcttta      3360
     ggtatgaaca aaataatagt tgcttaacac aacgtacaga taataaaata tttgtcttac      3420
     atagaaaacg agatactaaa gattcgatga aattagctca acttaccatt aattatccat      3480
     ttggatgaaa tcagtaaatt atcaaatgaa attaaaaatg ccgattttag acaatgcata      3540
     tttaaaacta aatatctaaa aatattaaaa tacaaaggca attacaagcc atagccatac      3600
     caagcggtat gcataatatc taaacatata aatataataa attattagaa aatgtttaaa      3660
     ataaataatt taaagattta aattttgtaa tgttataata caatcatttc aagacgttgc      3720
     aaggtggtaa atttgttatg caagataaaa tatatcgaat aaatacagtc cactaatttt      3780
     gtattgcaat aaatataatc agcaatgtaa ttatatcgca tacacctcat cttgccggcc      3840
     cttgccagaa                                                             3850
//
ID   BEL-23_AA-I repbase;    DNA;    INV; 5409 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AA_;
KW   BEL-23_AA-LTR; BEL-23_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5409
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions  458526  453118.
XX
CC   Positions [4426-5007] - Integrase core
CC   'GCAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1322
FT                 /product="BEL-23_AA-I_2p"
FT                 /translation="MSPRKTPIKTPAEKQSTENNDEDDISALIHSRGQVEA
FT                 KVTRLKSTLVQAELDETELTPPQVRLFMKKLESANAEFSSIHQRIMEKVPA
FT                 TIREEQDECYLHFDNLHDEVAMFLETRLERFSSSPGAVPTGQHTASQPMIV
FT                 QQPLPRAIPTFDGRYEHWEKFKMMFRDVVDKTNESDRMKLYHLEKSLVGDA
FT                 AGLIDAKTISDGNYQRAWQLLEERFEDKRRIIHLHIKEIFNTQKLTSTSYG
FT                 ELRKLVESFSNHVENLKFLGQQFNDASEQFLVYILSEALDDATKMHWESTV
FT                 QRGVLPAYDDMIKFLKDRVSVLERCQHQGHDPNPKQRNKPSSSIGKMSVQK
FT                 SNAVTTSSSSSKGPCHICGNGHFSYHCPMFKQLSASQMSDKVLQLPPQGTS
FT                 SQRVHIEQDVSQVQQAAQHSSP"
FT   CDS           1366..5409
FT                 /product="BEL-23_AA-I_1p"
FT                 /translation="MSGIKHPDQSQPPAVVHPSTSVVDHPVSTTCASKHVQ
FT                 AAKTVLLLTAVVRVTDRNNRFHQCRVLLDSGSQVNFVTEEMANRLGMPKTS
FT                 ANVSITGINALRSLARDKVIIKMQSSDGHYHANIECLVTPKVTGTIPSTRI
FT                 EVSHWKLPQGIQLADPEFFKPGKIDMLIGGEHFFDILKPAHIYMGDNEPQL
FT                 RDTHLGWVVAGVINEPHMLSATIQHTNLASLDSIEELIHQFWKVEEVPNAS
FT                 PLSSEQQACEAHFQSTYQRDSTGSFIVNLPFKDNMDQLNNCRSLALKRFFM
FT                 LEKRFERNPVLKQQYVDFIKEYEDLGHCREIKEADDPPNHCSYYLPHHAVL
FT                 RPSSSTTKCRVVFDASAKSEPSKMLLNNVLQVGPVVQNGIFQITLRFRKHA
FT                 YAFSADISKMYRQVLVAQPDRRFLRIFWRSDRSHPMKVLELNTITYGTACA
FT                 PYQATRCLVQLAKDDGPEFPIGAQILTDDFYVDDTLSGANTIEQAIECQCQ
FT                 LKALLAKGGFHIHKWCSNPEEFIQRIPIEDREQQVPLNEYGPNKVIKVLGI
FT                 LWDPNIDTFMIANPPSIPPSSSQPTTKRIIYFEVAKLFDPLGLFALVIVIA
FT                 KLLVQQLWRTSAGWDDPIDDEIQDRWSTLQSTLPELGRIHVPRCVTFPDTI
FT                 AHEVHGFADASNVAYGACIYLRSIFTDGSACLRLLCSKSKVAPLHELSIPR
FT                 KELCSALLLVNLVVQVIKTLQMPFREVVLWSDSTIVLAWLKKPLDQLQTFV
FT                 RNRVATIQSASSEYQWRYIRSADNPADIVSRGQLPEELRKNSLWWNGPRFL
FT                 TSANYNIEVTEEIPEFELPELKSNIAAPVVRCDPFQFFDRFSSFHKIQRIM
FT                 GYVLRFISRCCKSRSTDLGQGTNLSVQELRRSTEAIIKVIQQKHFGDEIQR
FT                 VISNQPCKRLGNLNPVYEDGLLRVGGRLDHSKLPYAAKHQIILPDKDPLTR
FT                 KLIITLHEEHLHIGQAGLISAIRQRYWLLNARSTVRQVTRACVKCFRVRPG
FT                 ETSQLMGNLPSSRVVPSPPFAVTGVDYAGPFLVKQGTHRPKIVKAYVAVFV
FT                 CMATKAVHLEVVSDLSTDAFLASLKRFISRRGMVQEIHSDNATNFHGANNE
FT                 LHELYRQFQDQRTVDEIQHFCQVREIQWHFIPPDAPEFGGLWEATVKSTKT
FT                 HLKRVVGNVKLTFEELATVMAEIEAILNSRPLFSISNDPSDPQVITPAHYL
FT                 IGRPLTAPAEPSLEDINVHRLNRWQHLQLMREHFWRAWTKDYLNSLQPRKK
FT                 NLRKTTNLRPGLVVLLHDKTQPPLNWKLGRITAVYPGDDGLVRAVDVFASS
FT                 TTFRRSINKVSILPIEDNLNPSLEEYVDTRSQPGGE"
XX
SQ   Sequence 5409 BP; 1553 A; 1406 C; 1222 G; 1228 T; 0 other;
     tatggtccaa tcgaaccgga taaggagatt catcgtatgt ggcgccatcg tcgcttctgg        60
     agaggataac aaggatgtca ccgagaaaaa ccccgatcaa gactccggct gaaaagcagt       120
     caaccgagaa caacgacgaa gatgacatca gtgccctgat ccattctcgt ggtcaggtgg       180
     aagcgaaagt taccaggctg aagtcaacct tggtacaagc cgagttagat gagactgagt       240
     taacaccccc acaagtgaga ctgttcatga agaagttgga gtcagcaaac gcggaatttt       300
     catccatcca ccagcggata atggagaagg ttcctgccac catcagggag gaacaagacg       360
     aatgctatct tcacttcgac aaccttcacg atgaggtagc aatgtttctc gaaactaggc       420
     tcgagagatt ttcatcatcc ccaggtgctg tgccaacagg acagcacacc gccagtcagc       480
     caatgattgt gcaacagccg cttccacgtg ccatacctac gttcgatgga aggtatgagc       540
     attgggagaa attcaagatg atgttccggg atgtggtgga caagaccaac gagtccgacc       600
     gcatgaagct gtatcatctg gagaagtcgc tagtaggaga tgcagccggc ctgatagacg       660
     caaaaactat cagcgacggc aattatcaac gagcatggca acttctggag gaacgtttcg       720
     aggacaagag acgtatcatt catctgcaca tcaaagaaat cttcaacacg cagaaactga       780
     ccagtaccag ctacggcgag ttacgcaaac tcgtcgaatc attttccaac cacgtggaaa       840
     acctgaagtt cctaggacag cagttcaacg atgcttctga gcaattcctg gtgtacatcc       900
     tatcggaggc attagacgat gccaccaaga tgcactggga gtcaacggtg cagcgtggag       960
     tattaccagc atacgatgac atgatcaagt tcctgaaaga tcgtgtttcc gttttggaaa      1020
     ggtgccagca tcaaggacac gatccaaatc cgaaacaacg aaacaagcca tcatcatcca      1080
     tcggcaagat gtcggtgcag aaaagcaacg cagttaccac cagttccagt tcatccaaag      1140
     gtccatgcca catttgtggc aacggtcatt tcagttatca ttgcccgatg tttaagcagc      1200
     tatcagcatc ccagatgagc gacaaggtgc tacaattgcc tccgcaaggg acatcaagtc      1260
     agagagtgca catcgagcaa gacgtgtcgc aagtgcaaca agcggcacaa cactcttctc      1320
     catgaagaca gcaatcggaa caacgaccaa gaagtgaagc cagccatgtc tggtattaag      1380
     catcctgatc aatcacaacc gccagctgtt gttcatccgt ccacttcggt ggtggaccat      1440
     cccgtgtcca ctacatgcgc cagcaaacat gtccaagcag caaagacagt cttgttgctt      1500
     accgctgtcg tccgtgttac cgatcgaaac aatcgatttc atcagtgccg tgttctgctc      1560
     gacagtgggt cacaagtcaa cttcgttact gaggaaatgg ccaatcgcct cggtatgccg      1620
     aagacatcag ctaacgtgtc aatcaccgga atcaacgccc tgcgaagcct tgccagagac      1680
     aaagtaataa tcaagatgca atcatccgac ggacattacc acgccaacat cgagtgtctg      1740
     gttacaccaa aggtaacagg tactattccc agtacacgga ttgaagtcag ccactggaag      1800
     cttccgcaag gcatccaact cgccgatcca gaattcttca aacctggaaa aatcgacatg      1860
     ctgatcggag gagaacactt cttcgacatc ctcaagcccg ctcacatcta catgggtgac      1920
     aacgaaccgc aacttcgaga cacgcatcta ggatgggtgg tggcaggagt aatcaacgag      1980
     ccacacatgt taagcgctac cattcaacac acgaacctcg catcgctcga ttccatcgaa      2040
     gagttgatac atcaattttg gaaggtggag gaagtaccaa acgcttctcc actatcatcc      2100
     gagcaacaag catgtgaggc gcactttcaa tcaacgtatc agcgtgattc aacgggtagc      2160
     tttattgtga atctgccatt caaggacaac atggaccagc tgaacaactg tcggtcactt      2220
     gctctcaaac gattctttat gttggagaaa cggtttgaac gcaatcccgt gctcaaacag      2280
     caatatgtcg atttcatcaa ggagtacgag gatctcggcc actgccggga aatcaaggaa      2340
     gctgatgacc ctccaaatca ctgctcctac tatttgccac atcatgcggt tcttcgtcca      2400
     tcgagttcaa caactaaatg ccgagttgtc ttcgacgcca gtgccaaatc ggagccatca      2460
     aaaatgttac tcaacaatgt cctacaagtc ggtccagtgg tgcaaaacgg aattttccaa      2520
     ataaccctac gattcagaaa gcatgcctac gctttctcag cagacatctc gaagatgtat      2580
     cgccaggtcc tcgtggctca accagacaga cgattcctgc gcatcttctg gcgatcagac      2640
     cgatcgcatc caatgaaggt actcgagctg aacaccataa catatggcac agcatgtgca      2700
     ccataccaag caacaaggtg tttggttcag cttgccaagg acgacggacc agagtttccc      2760
     atcggcgccc agattctcac agatgacttc tacgttgacg atactttatc tggtgccaac      2820
     acaatcgagc aagccatcga gtgccagtgt cagttgaaag ccttgctggc caaaggaggt      2880
     tttcacatcc acaaatggtg ctccaatccc gaggaattca tccaacgcat accaatcgaa      2940
     gatcgtgagc agcaagtacc actcaacgag tacggtccga acaaagtcat caaggtactc      3000
     ggaattctgt gggacccaaa catcgacact tttatgatcg ctaatccacc aagcattccg      3060
     ccatcatcga gtcaaccaac tacaaagcga atcatctatt tcgaggtggc aaaactattc      3120
     gaccctctcg gattgttcgc tcttgttatt gtcatcgcta aactactggt acaacagctg      3180
     tggcgcacgt cagccggttg ggacgatccc attgatgatg aaatccagga cagatggtca      3240
     acgctgcagt caacattacc cgagctaggt cgtattcacg ttccaagatg tgtcacgttt      3300
     cctgatacga tcgcacacga agtacatgga ttcgccgatg catcgaacgt tgcgtatggt      3360
     gcatgcattt atctgaggag tattttcact gacggatcag catgccttcg cctcctgtgc      3420
     agcaagtcaa aggttgctcc cttacacgaa ctgtccatcc cacgaaagga actttgttca      3480
     gcgcttcttc tggtaaattt ggtcgtccaa gtcatcaaaa cgcttcagat gccttttcgt      3540
     gaagttgtgc tttggtcgga tagcacaatc gttctggcat ggctgaaaaa acctttggat      3600
     caactacaaa cgtttgtgag aaatcgtgta gccacgatac aatcagcatc cagtgagtat      3660
     cagtggagat acatccgttc agctgacaat cctgccgata tcgtttcccg tggacaacta      3720
     ccggaggaat taagaaaaaa cagcctctgg tggaacggcc caaggttctt gacatcagcc      3780
     aattacaaca tcgaagtcac cgaagaaatt cctgaatttg aacttccgga gttgaaatcc      3840
     aatatagcag caccagttgt cagatgcgat ccattccagt tcttcgaccg cttcagttcg      3900
     ttccacaaaa ttcaacgcat tatgggctac gttttgcgtt tcatcagcag atgttgcaaa      3960
     tcacggtcaa ccgatcttgg tcagggaacc aatctctccg tccaagagct acgtcgatca      4020
     accgaagcaa tcatcaaagt aatacaacag aaacactttg gtgatgaaat tcagcgtgtg      4080
     atctccaatc aaccatgcaa gcgactgggt aacctgaatc cagtatacga agacgggctg      4140
     ttacgagtgg gtggacgatt ggatcactca aaattgccgt acgcagcaaa acaccagatt      4200
     attctacccg acaaggaccc gctcaccaga aagctgatca ttactctgca tgaagaacat      4260
     ctacacattg gacaagctgg tttaatcagt gccattcgac agaggtactg gttgctcaac      4320
     gcaaggtcaa cggtgcgcca agttacacga gcatgcgtga aatgcttccg tgtaaggcct      4380
     ggagaaacat cgcaactaat ggggaacctt ccatcatcac gtgttgttcc atcgcccccg      4440
     tttgctgtaa ctggcgtgga ctatgccggt ccattccttg ttaagcaagg cacacatcgt      4500
     ccaaagatcg tgaaagcata tgttgcagtt ttcgtttgca tggcaaccaa ggctgtgcat      4560
     ctggaagtcg tgtccgattt gtcaacagat gcttttttgg cgtctttgaa gaggttcatc      4620
     agtcgaagag gaatggtcca agaaatccat tcggacaacg ccacgaattt ccacggagcc      4680
     aacaacgaac ttcacgagtt gtatcgtcaa ttccaagatc aacgcactgt cgatgaaata      4740
     caacatttct gccaagttcg cgagatacag tggcacttca tcccaccaga tgcaccggag      4800
     tttggtggtc tttgggaagc aacagtcaag tcaactaaaa cacacctcaa gcgagtcgtt      4860
     ggcaacgtaa aattaacctt cgaggaattg gcaaccgtta tggccgagat tgaagcaatc      4920
     ctgaattctc gcccattgtt cagcatttcc aacgatccat cagacccaca ggtcatcact      4980
     ccagcacatt atctgatagg tcgcccactg actgctccag cagagccgtc cttggaagat      5040
     atcaacgtac atcgcctaaa ccgttggcaa cacctgcaat tgatgcgaga gcacttttgg      5100
     cgagcatgga cgaaggatta cctcaattct cttcaacctc gaaagaaaaa tctacggaaa      5160
     acaacaaacc ttcgccctgg tttagttgtt ttactccatg acaagacgca accaccgctg      5220
     aactggaagc taggacgcat cactgctgtg tacccaggag acgacggttt agttcgagcc      5280
     gtcgatgttt ttgccagcag tacgaccttc cggcgttcaa tcaacaaggt ttccatcctt      5340
     cccatcgagg acaacctcaa cccttcgctg gaagaatatg ttgatacgag gtctcaaccg      5400
     gggggagaa                                                              5409
//
ID   BEL-23_AA-LTR repbase;    DNA;    INV; 547 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AA_;
KW   BEL-23_AA-I; BEL-23_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-547
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions  453117  452571.
XX
SQ   Sequence 547 BP; 145 A; 153 C; 108 G; 141 T; 0 other;
     tgttccgtcc caacgtcaca agaagcaatt tgagaagcgg tggcagcagg aaacagcgga        60
     atattccatc gtcacccttg catttcgcta cccggtttgc ggcatcagga tagggagcgg       120
     aaaatacccc actgttgcca tattgtcgca tcccctttga gcttattcgt ttcaccctcc       180
     atccagcctg ctatgtacag cgaacgcacc accacaaccg tccccatcgt tgagcgcacc       240
     ccattgcagc atcgttcagc aatacataag agagtggaag tttccatcgc aacccaccgc       300
     tgcgcatcca atgttttgca tctacctgta acatatataa gtggcttgca tgcgcaagca       360
     attcattcag tttattttca acttttgtgc gatcatcaag tgaagaatat agtacagtta       420
     aagttccaaa ccgcctttct ctcctccgga agccaaaaca gtctttttca agacttgagt       480
     tgttaagagt ccattcctgt ggagccatcg gtccttaacc aagcaaatct agttgcaagc       540
     cgcaaca                                                                 547
//
ID   BEL-23_AG-I repbase;    DNA;    INV; 5673 BP.
XX
AC   .
XX
DT   13-OCT-2011 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AG_;
KW   BEL-23_AG-LTR; BEL-23_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5673
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1447-1447 (2016).
XX
DR   [1] (Consensus)
XX
CC   'CCGTG' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..2408
FT                 /product="BEL-23_AG-I_1p"
FT                 /translation="MAPNDILCVICAAQGEEDCVLCDECREAYHPKCVGAD
FT                 DSVRSREWFCPKCAARSSQKETGLPTTSFPSGDNPGSSTPTHQRDMMQEIS
FT                 LLFDQMKARMEKSSESPQTPQVRTRCYACEKTDAGNKILCNPCGRWCHISC
FT                 LSEDEAASIASWKCALCTVARMRASTNVMDRLVDRLERLEQKMVVSAMDPR
FT                 PSYGIPPPSSTVFGRSAETSQELSQSQASARHTGASKLPPFSGNPEEWDMF
FT                 ISAYEETTRLCGFTDGENIIRLQQALKGQALKAVQLRLRKAENLEEVLDTL
FT                 RSSYGRPELIVNTLLDQIKNAPVPRMEKLDTLVSYALMVEEISAAVRTGGL
FT                 ENRYDGPLLEELVGRLPPIIAFLWGMQRLGKPLASLSDFGTWMKSAKEAAL
FT                 IASPAAAKTDDRRRARNINVHIPAERTAQHEPDKCACDHRCNQLEYCEAFL
FT                 QLTPNDRWKLVKGEHLCSICLRRHRTTCRITRSCNKNGCTKRHHPLLHSPP
FT                 SPEGQNGTRYESNLSHSTGSADEVLLRYIPVVLHGPKRTLNTVALLDEGSS
FT                 VTLMEHRLLKELGLEGESKPLCLSWTGGQNREESDSVETSIMISGARKGDR
FT                 RFDMHAVRTVRTLGLPPQSADGCDISARYKHLQSLPLPSYVSAVPRLLIGI
FT                 DNYSLSRPLKTVEGEVNEPTATKTRLGWVVSGCFGKATHSAKQQVVSMHRL
FT                 HPCDCRDLEARVEAAIKGSFALEDVHSSNASAFMSKEDERALLLLRTYTKQ
FT                 VEGRYETGLLWRFDR"
XX
SQ   Sequence 5673 BP; 1508 A; 1427 C; 1539 G; 1177 T; 22 other;
     ttttaaaaaa atactcgagt gcaagtgcca tttcagtgct tcgttagcgt gccggaaagt        60
     tcttgaggca agtcagaaca ttaagaaccg tgcaagtgaa gttttgtgaa atggcgccca       120
     acgatattct atgcgtaatc tgcgccgcgc aaggcgaaga agattgcgta ctttgtgacg       180
     agtgtcgtga agcctatcat cccaagtgtg ttggtgcgga cgattcggtt agaagtcgcg       240
     agtggttctg tccgaaatgt gccgcaagat ccagccagaa ggagacaggc ttgccaacga       300
     cgtcattccc cagcggtgat aacccgggga gctccacgcc cacgcatcag agggatatga       360
     tgcaggaaat cagcctgctt ttcgaccaaa tgaaggcacg tatggagaaa agcagtgagt       420
     ctcctcagac cccgcaggtc agaacgcgtt gctacgcttg tgagaagacg gacgcaggaa       480
     acaagatact gtgcaatcct tgtggtagat ggtgccacat ctcctgtctc tccgaggacg       540
     aggcggcatc gatcgcatcc tggaaatgcg ccctttgcac cgtcgctagg atgagggcat       600
     ccaccaacgt tatggatcgt ctagtggatc ggttggaaag actggagcag aaaatggtgg       660
     tttcagccat ggacccgcgt ccctcttatg gcattccgcc accaagttca accgtctttg       720
     gacgttccgc tgagaccagc caagagctgt cccaaagcca agcctcggcg aggcatacag       780
     gtgcgtccaa gttgccaccc ttttctggca atccggagga atgggacatg ttcatctcag       840
     cgtatgagga aaccacccgc ctttgtggat tcacagacgg cgagaacatc attcgcctcc       900
     agcaggcgtt gaagggtcag gcgctgaagg ctgtgcaact acgccttcgt aaggccgaaa       960
     acctggagga agttctagac accttacgca gcagttacgg acgaccggaa ctgatcgtca      1020
     atactctgct ggatcaaata aaaaatgcac cggtgccgcg gatggaaaag ttggacaccc      1080
     ttgtgagcta tgccctgatg gtagaggaga tcagtgcggc agtgcggacc ggaggcttag      1140
     aaaaccgata cgatggtcca ttgctagagg aacttgtcgg acggctgcct cccattatcg      1200
     cattcttatg gggaatgcag cgtttgggaa aacctctagc cagcttatcc gattttggaa      1260
     cctggatgaa aagtgctaaa gaagctgcgc ttatagcttc tccagcagcg gcgaaaacgg      1320
     acgatagacg gagggcgaga aacatcaacg tgcatatccc ggctgagcgg actgctcaac      1380
     atgaaccaga taaatgtgca tgtgatcatc gatgcaatca attggagtat tgcgaggcct      1440
     tcctgcagct gactcccaac gaccgatgga agcttgtaaa gggtgaacat ctgtgcagca      1500
     tatgcttgag gcgccaccgg accacctgcc gaatcacgag gtcttgcaac aagaacggct      1560
     gcacgaagag acatcatcct ctgttacact caccaccctc accggaaggg caaaacggta      1620
     ccaggtatga gtctaatctt tcccattcta caggaagtgc tgacgaagtg ttgttgcgct      1680
     atattcctgt tgtactacac gggccgaaac gaacgttgaa tacggtagct ctactcgatg      1740
     aggggtcgtc cgtcaccttg atggaacacc gcttactaaa ggagctcgga ctagaaggag      1800
     aatcgaaacc cctttgccta agctggactg ggggtcaaaa ccgcgaagag agcgattccg      1860
     tagagacatc gatcatgatt tccggtgcgc gtaagggaga ccgtcgcttc gatatgcacg      1920
     ccgtgcggac ggttcgcacc ctgggtcttc caccacagtc tgctgatgga tgcgacatat      1980
     cagcgcgtta taaacacctg cagtctctgc ccctgccatc atacgtatct gccgtcccaa      2040
     gactactcat cggcatcgat aattacagct tgtctcgacc cctgaaaacc gttgaaggag      2100
     aggtaaacga gccaacggca acaaaaactc gattaggctg ggtagtgtcc ggttgtttcg      2160
     gcaaagcaac tcattctgcg aaacaacaag ttgtatcgat gcatagactt catccgtgcg      2220
     attgtcggga cctggaagct agggtagaag ctgcaatcaa gggaagcttt gcgttagaag      2280
     atgttcactc cagcaacgct tcggcattta tgtccaaaga agatgaacga gccttactcc      2340
     tactacgcac gtatacaaag caggtagagg ggcgatacga aacagggttg ctatggcgct      2400
     tcgataggtg agatgcctga taatagagga atggctttaa aaaggctgga ctgtctagaa      2460
     cgacgcatga cgcgcgaagt ccaactacga acgaccttaa acgagaagat caaagagtat      2520
     ttagaaaaag gctatgccga aaactgtcac tggaagagaa acaagcgatc ggtcccagaa      2580
     cgtggtatct tcctatcttt cccgtggtaa accctaacaa gccgggaaag gtgaggttgg      2640
     tttgggacgc ngccgccaaa tttcatgggg tctcgctgaa ttcgatgctg ctaacaggtc      2700
     cagatctact gtcctccctt ccatcagtac ttcaaagatt ccgtgaatat cgagtggcgg      2760
     tggccgctga catccgggaa atgttccacc aggtacgcgt ttgkgaagac gaccaccata      2820
     gccaacggtt cctatggcga tggaatggag acacaaatgc agagcctgag gagtatgtca      2880
     tgctgaggat gacctttggn gcggcctgct ctccaagtac ggcgcagttc gtgaagaacc      2940
     agaacgcgga gaaatatgcc acntcgcatc cccgtgcagt cggctgtatc aatnaagaac      3000
     actacgtgga cgacatgctt acnagtgcgg aaacggaanc agaagcgatt gagctggcgt      3060
     atsaggtgag cttaatacac ggtgatgctg gattccctct ccacaactgg ctgtctaact      3120
     ctccagaggt tttcaattat gccacaggaa gcacatctac tcaaaaggag ctcaacatca      3180
     acgaatatct gcgacacaga aaatattagg tatgtggtgg gacatacaaa ccgactcatt      3240
     ctgcttccga tcgcctatgc taaactccga gcttctgcaa gggaatatgg tcccgacgaa      3300
     acgtcaagtc ctcgggtgct aatgaggatt tttgatccst taggcctcat cgcaggacta      3360
     ttactgtacc tgaaggttac tgctccagga ggtctggaga agtggtactg gatgggatga      3420
     ggcaatcccg tatgagctta aggaaaaatg ggatgaatgg ctagaacgtc tgccggaact      3480
     ggaaagaata accatccccg atgctaccga aagccggcgt cgctcacaga gaccatctaa      3540
     actacagcta cacgtgttcg tagacgcggg tgaagatggt ttcgccgckg tcgcctactt      3600
     ccgatttcaa gcaaggacga tgtcgaggtg gcgctmgtcg gcgcgaaaac cagagtggcg      3660
     cctctgaagt acctgtcagt cccccgacta gagctgcagg cagccgtgat gggtgccaga      3720
     ctggccaaga ctataaccaa tgctcaccga gaaaaagtca cacggcgctt cttctggacc      3780
     gactcgaaag atgtaatata tatggatcaa ctccgatcac cgaaggtaca gtacattcgt      3840
     agcacacagg gttggtgaga tgctggaaac gacggaggtc gacgaatggc gatggattcc      3900
     aaccaaamgc aacgtsgccg acgagggtac caaatggacg aagctgagcc gacatctcac      3960
     gkccagcgag tggttcagtg gaccccagtt cctacgacga cccgaagcag aatggccaac      4020
     agacaccgta gactgccata ggacaaatcc gaggagctgc ggaaaaacga tatgctgaag      4080
     ctggtcggcg tccacatagt gcgagatccg gttttcatcg actacgagcg attttcaaga      4140
     tggtcgcggc tggtacggtc gatggcttac gtgtgtcggt tcgtaaacaa ttgcagaata      4200
     ccgaaggcag ataaatctcg atcgagaggt gggaccgcta acaccgcgac gaaatccagc      4260
     gggccgagac ggtaattctg cgagacgttc agaggaaagc tttccacgac gaatatgcca      4320
     tacttctgga aggcgaggga acacccaacg acaccgtcgt agacacgtct gactcccagg      4380
     agtagtttgt tgtacaaacg aagcccctac atggacgaga acggaatgct gagattgagc      4440
     ggaaggatcg acgctcgttg cctttaccag ccaggagacg aagcgcccta ttatccttac      4500
     ctaaacgaca ccgcattacc gagttgatcg tcgaccgatg tcatagaagc acggccatat      4560
     gagccacgaa actgtagtga acgaagtgcg tcaamgcttc gatatacccg ctctgcgagc      4620
     agcgtgtcac cgagtaagaa acgggtgccw gcaatgccga acatgcaaaa tgctatacgc      4680
     agagccagcg tccccgatga tgggcgaatc tacccgcagc tcgcctcgct gccttckcca      4740
     ggccgtttwc gcatacaggc atcgactatt tcggcccgat ggtagtcgtg aacggccgaa      4800
     agacggaaaa acggtggggt gttttgttca cctgcttgac ggttcgagcc gtccacatcg      4860
     aactggcgca atccctgtct acgagcgcct gcatgatggc agttcgaaac ttcatggcac      4920
     gccggggaac accaatcgaa atcgtatccg atcgtggaac gaatttcgtg ggcgccggtc      4980
     gcgaacttaa ggaagccgtg gaacgaatag atgtcggcaa gatcgtagat ggaattagcc      5040
     tccccmgatc cggtgtggac gtttaaccct ccmgcagctc cgcatttcgg aggagcatgg      5100
     gagcggctcg tccggtcggt aaaaagaacg ttgacgaaca tccagttcac taagtatccg      5160
     accgatgccg tactcaacag ttggttgatc gaagttgaga atatcataaa ttcacgccca      5220
     ttgactgatg ttccggttga tcgcgaggaa gacgccccst tgacaccaaa ccactttctt      5280
     gtgggctcat catccggtgc caaaccgatc accacagtgg acscctcgcc cgaagtgtta      5340
     aagaacactt ggaaaacatc acaaatatac gctgacgtgt tctggcgaaa gtggttggcc      5400
     agctacctgc ccactttaac acggcgcacg aagtggcacg caccggtgaa accgatcgca      5460
     gagggtgaca tcgcactaat agtcgacgag actctccccc gtggatgctg gccgaaagga      5520
     cgcattgtaa atgtgatcga atcaaacgac ggtcaagtac ggcgggtgca cgtgcagaca      5580
     gcgtccggta aagtgctcga gcgcccagct gtcaaaatag cagttatcga cgtatcggac      5640
     aaatgaagtg ttgtttacaa acactggggg gac                                   5673
//
ID   BEL-23_AG-LTR repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   13-OCT-2011 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AG_;
KW   BEL-23_AG-LTR; BEL-23_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-390
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1435-1435 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 390 BP; 117 A; 82 C; 97 G; 94 T; 0 other;
     tgttgacaaa catcaacggt ccgttcatcg tgatgctagt ttgagcaact aaacatagag        60
     ggcgctgact tcgtagagag gatgccatcg atgccacgat cgtagggcga aatatttcaa       120
     catgactcag ccatatttgc aactgttagc acgaagatta accgaagaac caccgaaggg       180
     aaagggcatc gaccgtagcg ccgagcggga acgagcgaaa gggtacttaa ggaacgacgg       240
     ctgaagaagc gcccttttct cgcgtactaa agtcccggaa gaaagagtat ttttttaacc       300
     cttccgtttg aataaagtgt taaaagaact ttttgcgttt actattcgcg gacttttcaa       360
     gttgagaaaa ttctgttgct cgaggcaaca                                        390
//
ID   BEL-23_AnFu-I repbase;    DNA;    INV; 5706 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5706
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 674-674 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..5662
FT                 /product="BEL-23_AnFu-I_1p"
FT                 /note="PHD zinc finger, DUF1759, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MAETNAEQNEASAKCMICAESAGDPDWVCCDKCNRWA
FT                 HYSCVGVDDSIKERCWFCAVCVSHSSLGEAGKRPSAEGGFETQEKLLVEQL
FT                 RIKKEQMVRQAQLERKRMEAEFELQKLELEIKQELRRNQIRLNKELEERCA
FT                 ASENEFLFSTVARETKGGVSNGMQDSGENEALLMKTRSNTFGVLEKQNIVP
FT                 EKVPSNDHASTRCVCESGIKNTELSCETNANVSVNVSDNAAKKDNVSYKLS
FT                 QEQVATRKIVKSGLPKFNGDAEVWPYFIKSFEQTTAACGFSNLENLERLRE
FT                 CLTGEALEGVKGVLLLPESVPRVIEDLRHLFGQPERLLGALLTKIRRTPAP
FT                 TISDLSSFVTFSVRVKQLADHLEASGLSEHLGNPLLVQELADKLPHEYLME
FT                 WVEYKDNHQGYALIKFAAFISAVGRKASKAVASKSLQQTANSRKLNATAKT
FT                 FTMVHDEAKPAYDPNKRLCFACGKPGHYVKVCRKFQDMKVPDRLNLTKEKL
FT                 LCHRCLIPHGKKMCGNNKPCNIDGCLEMHNPLLHSQKKAVDTSTARIHSHN
FT                 DESRNSILFRMIPVKVKGKYGDLNTLALIDEGSSVTLVDQHVTDLLGIVGD
FT                 PEPLVLSWTQDISRSENLSQRVDLQMTTDSSQRFCLENVRTVSELLLPNQQ
FT                 LKVADLVAKYPYLTGLPLKDYGGMKATILIGLDNVDLIAPMESRVGSKNEP
FT                 IGVRSKIGWTVYGPQKPKTNIHAYLNLHNGEPSNQDIHDMIKRLYIDEAHG
FT                 NIHYVAPESDELKRARMILEKTTKRVNGRFETGLLWRKDECTLPDSYDMAT
FT                 KRMHSLTRKLEKDDVLREKTVKLVEHYVKKGYAHLLTENDQASLQNVWYLP
FT                 LGVVTNPKKPGKLRLVWDAAAKVNGISLNTELLKGPDMLVPLMKIICLFRE
FT                 RPIAFGGDIEEMYHQIQIRPEDKQAQRFLFKSKSSDSMQTYVMDVATFGAT
FT                 CSPSSAQFVKNINATEFANEYPEASAAIIEKHYVDDYFDSADTVAEAIKRA
FT                 TEVRRIHSLGGFNIRGWVSNSPEFMKALNPEKAIVAETINFSNLEEADFER
FT                 VLGISWQPDKDWLVFTTSKMELLRSLGNDHRPTKRMVLSFTMAQFDPPGYL
FT                 SPITIRGKMLLQDIWRSGCNWDEEINHECFEKWRQFTKLMQAVGSFRLERS
FT                 YFGSAPSYEIKDIQLHVFADAGENAYGSVAYFRAKVRGKVECSLIMSRTKV
FT                 APLKLLSIPRMELSAAVLGARLAKTVKETHSFTIRQTYFWIDSNVVLSWLQ
FT                 SDQRKYKQFVGFRIGEIMELSKGCEWNWIPTGKNIADCLTKWGKDPELDPS
FT                 STWVCGPEFLYQEEAMWPKKKLPPANTVEELRGHLLLHHVKIPQPVIDCTR
FT                 ISKWKILIRTIATVLRFISNCKRKAKGLAIEPLRTTRGKTQRVPLTQEEYG
FT                 KAQLILIKQAQSESFGEEVKVLKRNADLPVDEWKAIDKSSPLYRTVPLLDE
FT                 DNIIRMEGRLTNAEFLAFNVRFPIVLPNDHRITWMIVQYYHEKCGHAYRQT
FT                 VKNELRQQFHIPHADAIVRKVAASCMRCKVNKCRPRNPRMAPLPIQRLTPY
FT                 IRPFSFVGVDYLGPFSVTVGRRTEKRWIAIFTCLVVRAIHLEVTHSLTTQS
FT                 CLMAIHRFVGRRGWPLEFFSDNGTNFRGASEEVLRTMREIGNDCADQLTDV
FT                 TTKWNFNPPGTPHMGGVWERLVRSVKEALLVINDGKRLTDEILQTSIVEAE
FT                 DMINSRPLTSVSSDVDEAEALTPNSFLRGESLNQPTRPAYPTDNKAALRDI
FT                 FQRSQQICDRIWQRWIKEYVPLLNSRSKWYDDTRALQAGDLVYIVEGKNRK
FT                 CWIRGIVEEPIVSPDGRVRSAWIRTKHKTYKRAVVNLAVLEIA"
XX
SQ   Sequence 5706 BP; 1746 A; 1184 C; 1436 G; 1340 T; 0 other;
     aaagcttcaa aaattaaaga tttcgtctca aaggtcgaac ggttaagtct actagtgtgt        60
     gcgcaaaatg gcggagacta atgcggaaca aaacgaggct tcggcgaaat gcatgatttg       120
     cgccgagagt gctggtgatc cggattgggt gtgctgtgac aaatgcaatc ggtgggcgca       180
     ttattcctgt gttggtgtgg atgatagcat caaagagcgc tgctggtttt gtgcagtttg       240
     tgtgtcccat agttccctag gcgaagccgg aaaacgtcct tccgcggaag gcggatttga       300
     aacgcaagaa aaattgctgg tagagcaatt gcgcatcaaa aaggagcaaa tggttcgtca       360
     ggctcagtta gagcgaaaga gaatggaggc agagtttgaa ctgcaaaaac tggagcttga       420
     aataaagcag gaattgcgtc gcaaccaaat tcgacttaac aaagaactag aagaacggtg       480
     tgctgcttcc gagaacgagt ttctgttttc gaccgtagct cgagaaacaa aaggaggcgt       540
     ttcgaacgga atgcaagatt ccggagaaaa cgaagcgttg ctcatgaaaa cgcgatctaa       600
     cacgttcggc gtgttagaaa agcaaaacat tgttcccgag aaagttccat ctaatgacca       660
     tgcttcgacg cgatgtgtgt gtgagagtgg aataaagaac actgaacttt cgtgcgagac       720
     aaatgctaac gttagtgtta acgttagtga taatgcggcg aaaaaggaca atgtgagtta       780
     caaactatca caagaacagg tagctacgag gaaaatagtg aagagcggtt tgccgaaatt       840
     caatggcgac gctgaagtct ggccatattt catcaaaagt ttcgaacaaa caactgcggc       900
     ttgcggattt tcaaatcttg aaaatctcga acgattgcgt gaatgtttga cgggtgaagc       960
     gctggaaggt gtgaaaggtg tgttgctgtt gcctgaatcc gtaccacgtg tcatagaaga      1020
     tttgcggcat ctatttggac aaccagaaag gctgttgggt gcgttgctga ccaagattcg      1080
     ccgaactccg gcgccgacaa tatcggatct ttcgtcattt gtcaccttta gtgttcgagt      1140
     gaagcaacta gctgatcatc tcgaagcaag cgggctaagc gagcatcttg gcaatcctct      1200
     cctggtacag gaactggcag ataagctacc acacgaatac ttgatggaat gggtagagta      1260
     taaagataac catcaaggat acgcactaat caagtttgct gcattcattt cagcagtagg      1320
     aagaaaagca tcgaaagccg tggcaagtaa gtcgcttcag caaacagcaa acagcagaaa      1380
     actaaatgca acggccaaga catttacgat ggttcatgat gaagccaaac cagcatatga      1440
     tccaaacaag agactttgtt ttgcatgcgg taagccaggt cattacgtta aggtatgccg      1500
     gaaatttcaa gacatgaaag tgccagaccg tctgaatcta actaaggaaa agctgctttg      1560
     ccatcgatgc ttaatacctc atggaaagaa aatgtgcggt aacaacaaac cgtgcaatat      1620
     tgatggatgc ctcgaaatgc ataacccttt gcttcatagt cagaagaaag cggtcgatac      1680
     atcgacagcc cgcatccaca gtcacaacga cgagtctcga aattcaatcc ttttccgcat      1740
     gattccagtg aaagttaaag gaaagtatgg cgaccttaac actctggcac tcatagatga      1800
     ggggtcatcc gttacgttgg tggatcaaca tgtaaccgat ctactaggta tagtaggaga      1860
     tccagaaccg ctggttcttt catggacaca agatattagc cgttccgaaa acctgtcaca      1920
     aagagtcgac ctgcaaatga caacagacag tagtcaacgg ttctgcctag agaacgttcg      1980
     aacggtgtcg gaattattat tgccgaacca acaactgaaa gtagcagatc ttgtggcaaa      2040
     gtatccttat ctgactgggt tacccttgaa agattatgga ggaatgaaag cgactatatt      2100
     gattggtctt gataacgtcg acctcatagc tccaatggaa tctcgcgttg gatcgaagaa      2160
     cgaacctata ggagtgcgtt cgaaaatagg ctggacagta tatgggcctc aaaaaccaaa      2220
     gaccaatata catgcgtacc taaacctcca caatggcgag ccgagtaacc aagatatcca      2280
     tgatatgatt aaacgactat acatagatga agcacacgga aacattcatt atgttgctcc      2340
     agaatcagat gaacttaagc gcgctaggat gattcttgaa aaaacgacta agcgtgtaaa      2400
     tggtcgattc gagacagggc tactgtggag aaaagatgag tgcacactac ctgacagtta      2460
     cgacatggcc acaaagcgaa tgcactcatt aactcggaag ctggaaaagg atgatgtcct      2520
     tagagaaaaa actgttaaac tcgttgaaca ttatgtaaag aaaggctatg cacacttgtt      2580
     aacagaaaac gatcaggcat cgcttcaaaa tgtatggtat cttcccttgg gtgtcgtgac      2640
     caatccgaaa aaaccaggga aactgcgact tgtttgggat gccgcagcaa aggtaaacgg      2700
     catctcgctg aatacagaac tcttgaaagg ccctgatatg ttagtcccat taatgaagat      2760
     aatttgcttg ttccgggaac gtcccattgc ctttggaggc gatatcgaag aaatgtatca      2820
     ccagatacaa attcgtccag aagacaaaca ggcccaaagg ttcttgttca aaagcaaatc      2880
     tagtgattcc atgcaaacct atgtcatgga tgtcgccacc ttcggagcta cttgctcgcc      2940
     ctcgtcagcg cagttcgtga aaaacatcaa tgcaacggag tttgcaaatg agtatccgga      3000
     agcatctgca gcaatcatcg agaagcatta cgtcgatgat tatttcgaca gtgcggatac      3060
     agttgcggaa gctattaaac gagcaacaga ggtgcgtcgc atacactcct tgggaggttt      3120
     caacattaga ggctgggtgt caaactctcc ggagtttatg aaagcgctga atccagagaa      3180
     ggctatcgta gctgaaacta ttaacttcag taaccttgaa gaagcagatt ttgaacgcgt      3240
     tttgggcatc tcatggcagc ctgataaaga ctggttagtg tttacgactt cgaaaatgga      3300
     actgttgcgg agtctaggaa acgaccatcg accaacaaaa agaatggttc tcagcttcac      3360
     aatggcacag ttcgacccac cgggttattt atctccgata acgataagag gaaaaatgtt      3420
     acttcaggac atttggaggt cgggttgcaa ttgggatgag gagataaacc atgaatgctt      3480
     cgagaaatgg cggcaattta caaaactgat gcaggctgtt ggatccttcc gattggaacg      3540
     gagttatttc gggagcgcac caagctacga gataaaggac attcagctgc atgtgttcgc      3600
     cgatgcggga gaaaatgcgt acggaagtgt agcgtatttc cgggcgaaag tgcgaggcaa      3660
     agtagaatgc tcgctaataa tgagccgcac caaggtggca ccgctgaagt tgctatcaat      3720
     tccgagaatg gaattatctg cagccgtgct aggagcaagg ctagcgaaga ccgtaaagga      3780
     aacgcatagc ttcaccataa ggcagactta cttttggatc gattccaatg tagtactctc      3840
     gtggcttcag tctgatcagc gaaaatataa gcagtttgtt ggatttcgga tcggagaaat      3900
     catggagcta tctaaaggtt gcgaatggaa ctggatacca actggtaaga acatcgctga      3960
     ctgtcttact aaatggggta aggatcctga gttagatcct tccagtactt gggtatgtgg      4020
     acctgagttt ctgtaccaag aggaagcaat gtggcctaag aagaagttgc ctccggcaaa      4080
     tacggtagaa gaactaagag gtcatctatt gctacatcac gtgaaaattc cacaaccagt      4140
     gattgactgc acgcgtatct caaagtggaa aattctcatt cggaccatag caacggtact      4200
     tcgcttcatt tcgaattgta agcgcaaagc taaaggcttg gccatagaac cgcttaggac      4260
     tacgcgaggt aaaacgcaac gtgtgccttt gacacaagaa gaatacggaa aggcacaact      4320
     cattttgata aaacaggcgc aatcggaaag ctttggcgaa gaggtaaagg tgctaaagag      4380
     aaatgcagat cttcctgtcg acgaatggaa agccattgat aagtccagcc cactgtacag      4440
     aacagtacct cttcttgacg aagataatat catcagaatg gagggacggc tgacgaatgc      4500
     tgaatttctt gctttcaacg tgcgcttccc gatcgtcctg cctaacgatc atcgcattac      4560
     gtggatgatc gtccagtact atcacgaaaa atgcggacat gcatataggc aaacagtaaa      4620
     gaatgaattg cgacagcaat ttcacatccc tcatgcagat gcgattgtca gaaaggtggc      4680
     agcgtcctgt atgcggtgca aggtgaacaa gtgtcggcct cgaaatccgc gaatggcgcc      4740
     gttacccatc cagcgcttga ctccgtacat acgtccattt tcgtttgtgg gcgtcgacta      4800
     tttgggaccg ttcagtgtaa cggtcggacg cagaactgag aaaagatgga tagcgatatt      4860
     tacgtgtttg gttgttcggg ccatccattt ggaggtaaca catagtctaa ccactcaatc      4920
     ttgcctaatg gcaattcatc gcttcgtcgg acgtcgaggt tggcctcttg aatttttctc      4980
     agacaatgga actaatttcc gtggcgccag cgaggaagtg ttaaggacca tgagagaaat      5040
     tggaaacgac tgcgcagatc aactaaccga tgtgacaaca aagtggaact ttaacccacc      5100
     tggtacaccc catatgggcg gtgtatggga acgactcgtt cgttctgtga aggaagctct      5160
     cttggtaatc aacgatggga agcggctaac tgacgagata cttcagacat cgatagtaga      5220
     agcggaagac atgataaact ctcggccgct taccagcgta tcttcagacg tcgatgaagc      5280
     tgaagcactc acaccaaaca gctttctcag aggggaatca ctcaatcaac cgaccagacc      5340
     ggcgtatcct accgacaaca aggcagccct acgagatatc tttcagcgat cgcagcagat      5400
     atgtgacagg atatggcaac gctggatcaa agaatacgtg ccgctattga attcacgttc      5460
     gaagtggtac gacgatacgc gagctcttca agctggggac ttggtatata tagtagaggg      5520
     aaagaatagg aagtgttgga tccggggaat tgtagaggaa ccaattgttt cgccagacgg      5580
     gcgcgtgcgt agtgcgtgga ttaggaccaa gcataaaaca tacaaacgag cagtagttaa      5640
     cttggccgtc ttagagattg cttagtaacc taacttataa acggagatag gttacgggcc      5700
     ggggta                                                                 5706
//
ID   BEL-23_AnFu-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-273
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 727-727 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 273 BP; 89 A; 45 C; 63 G; 76 T; 0 other;
     tgttacggcc aactgaagtt cgaattgacg taaggcatat tttgacagtt gatatttgac        60
     agttgaggat cggtcagcgg gaccatgggg atctgtcaac cgtacagtgt agaagaagac       120
     agaacaaaaa atgagatcag tacggtgaaa tcagtggaag gaaacagacg cctagacaca       180
     gctcaagaat cggactaatt tttgaatttt accttatacc tgttttttta tggttaataa       240
     attccaagaa ttccgtaaat ccgtgttgtt aca                                    273
//
ID   BEL-23_CQ-I repbase;    DNA;    INV; 6708 BP.
XX
AC   AAWU01010308;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_CQ_;
KW   BEL-23_CQ-LTR; BEL-23_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6708
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 199-199 (2011).
XX
DR   GenBank; AAWU01010308; Positions   22655   15948.
XX
CC   Positions [4816-5424] - Integrase core
CC   'ATGTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..5757
FT                 /product="BEL-23_CQ-I_1p"
FT                 /translation="MASLRDLFKFERGLLDSLANLEDFVENFDAKRDAARV
FT                 ESRLERLETVFKDFMENRARLESKHEQDLSSASEPKDPEAKEKKQQARETN
FT                 KVTRLDFENRYLDLKDFLVSKRVKPTAEASSLAPPPCQPLSSRFQLPSFKI
FT                 PSFDGDLTKWMSFRDAFKSVVDKDPSLSGVDKLNYLRSLVQFGASTIVEGV
FT                 DVKETNFDVAWDLLTLRYENNKLISRALMDDLLNTEPIKRESYEALITLID
FT                 SFERNLMQLKKLGLKTDDWSPILAHLLYSRLDTETQRHWENHHKSREVPDY
FT                 KEMLKFLQDHLTTLQPLVNKKPRVQEHRQEASKPTPKTKFGSTLTTTTSSQ
FT                 NKSCPFCQKPTHSPFKCESFLKLNPFQRYELAKKIGLCLNCLNPFHLARAC
FT                 PSSACRVCGQRHHTMLHRRSTNTPNQELTLPHSTTNAQFQAQPSRASNSQS
FT                 QSQTSAPPMLPSTSDQPSLSLAACTPNNANVVFLSTAVVKIADSHGNTYLA
FT                 RALLDCCSERNLMSERLAQKLVLRRQNDPLSLQGVGSSQAVSKQSTLAKIL
FT                 SRWTDYSIDLKFHILPEFRLIVPSDCVQTQTWTHPIPSSLFLADPRFFEPN
FT                 QIDLIIGAEVHYRLLLNGFIDLGPNLPILKETVFGWIVSGKCSTSSRPSSI
FT                 TMVCSNADLEKQVARFWELESCHSESVLSVEEKQCEEYFAKTTFRDSTGRF
FT                 VVRLPKKEAVLEKLGESRAIAERRFHYIERRLQNKPTLGKSYAAFIREYVD
FT                 LGHMSIVDPRNDALPAQAKPYYMPHHCIERPESTTTKLRVVFDASCATDTG
FT                 ITNDALAVGPVVQDDLFSLILRFRLEPFVLVADIEKMYRQVLVHPDDRHLQ
FT                 RILYRESPTEPLQTYELRTVTYGTASAPFLATRCLKQLALEEEHRFPEAAN
FT                 VLARDFYMDDLLCGVETAREGIELSRQLIELLGSAGFKLCKWASNSSTILQ
FT                 NIPAELRENRSEFELDSSSAPIKTLGLLWQPADDVFLFKVPIWDVRAPITK
FT                 RLVVSDTARLFDPQGLVGPVILRSKTFVQQLWKAKVAWDRILGEKQQQYWK
FT                 EFRTDLDALNTFTVPRWAAPGSQPVETQLHIFCDASELGYGACAYLRTESG
FT                 NGTVSVNLLTAKSRVVSLSKQINLPRLELCGALLAAHLYEKIAPNLPPNIR
FT                 VFFWTDSMLVLHWLAASPSRWKKFVANRVSEIQEVTAGHVWLHVPGVDNPA
FT                 DVISRGMTATQLIDCMLWWQGPSWLRQSSRFWPCIVRTSDDLFDKEQLEER
FT                 PVVALPAVAETSIFGVTSSLSELIRKVAYYRRFSYNARGCNQSNRRVGPLS
FT                 TAELNESLLCLAKLAQQESFPKDLHAICTTGQVESTSKLKSLSPILVEGVL
FT                 RTRGRLQHADVPYDRKHPIILDNKHPFTLMIMRYNHLKYLHAGPQLLIAAV
FT                 RAKFWPLRARDLARKVVHECVDCFRCKPRTSDQIMGDLPAVRVLPILPFLN
FT                 SGVDFCGPFYLRPPHRKAAPQKCFVAVFVCMATKAVHLELVGDLSADSFIA
FT                 ALKRFAARRGVPKTLFCDNGTNFVGARRTLNEFLRLLKAQQVQDQVVRSCS
FT                 ADGIQFQFIPPRTPHFGGIWEAAVKSLKNHLRRTVGNANLTAEQMSTFLAQ
FT                 AEACLNSRPLTPISNNPDDLDGHFLVHRPLIAIPEPSYEEIATNRLSQWQM
FT                 IQEYLRRLWKRWSTEYLSGLQQRTRWTRERDNIRIGTMVLVKEDNLPPQKW
FT                 RIGRVIEIFPGNDGHVRVVKLRTPDGVYTRAITRLCVLPIDDNQQPAQDSQ
FT                 "
XX
SQ   Sequence 6708 BP; 1566 A; 1867 C; 1661 G; 1614 T; 0 other;
     tttttatggt ccttcgagga ccggattgta acaaccgttt tcgccgaaaa aattgatctt        60
     gctggtgacg ctatcaccga acacgttgct gattgattgc tgtggccctc ttcggcgtcg       120
     atctccagca tcggcgtgac ctgttcctgc ctcgtcgtgg gacaccgacg gcctgcagca       180
     tcttcgagac gcccgtggag cacagcgaag gagcatcaac gaacgagatc aagccatcct       240
     ccaaaacgcg cgctcggcgg cgtcgctcgg gtatagcgta caataggctg gtagcgtgag       300
     tacacccaga agggaagtgc acttttttac tacaaaaatt aaaagttgca tgcgaaattc       360
     gataaatttg cgattttggg gaaaatttgg gaaaattgga ctttggattt tccaaattaa       420
     acgtgggatt gcgacatcta caaaatggcg tcgcttcgtg accttttcaa atttgagcgt       480
     ggccttttgg actcactcgc caatctggaa gattttgtgg aaaatttcga tgcgaaacga       540
     gacgcggcca gggttgaatc tcgtctggag cgactggaaa cggttttcaa ggattttatg       600
     gaaaatcgtg ccagacttga gtcgaagcat gaacaagatt tgagttcggc cagcgaaccc       660
     aaagaccccg aagcaaagga gaagaagcag caagcacgag aaacaaacaa ggttaccaga       720
     ttggatttcg aaaatcgtta tttggacctc aaggactttc tggtctcgaa gcgtgttaaa       780
     ccgactgctg aagcttcttc ccttgcccct ccgccctgcc aacccctgtc ctctcgattt       840
     caactcccta gtttcaaaat cccatccttt gacggtgatc taactaaatg gatgagcttt       900
     cgtgacgcgt tcaaaagtgt ggtcgacaag gacccgtcgt tgtcaggtgt ggataagctg       960
     aattaccttc gctcgttggt tcagtttggt gccagtacaa ttgtggaagg agtggatgtg      1020
     aaggagacca actttgatgt cgcgtgggac ctgctgacac tgcggtacga gaacaacaag      1080
     ctcatctccc gcgcgctgat ggacgacctg ttgaacaccg aaccgatcaa acgagaatcc      1140
     tacgaagcac taatcaccct tatcgactcg tttgaacgca acctgatgca gctgaagaag      1200
     ctcggactca agacggacga ctggtcacct atacttgcac acttgctgta tagtcgtttg      1260
     gatacggaga ctcaacgcca ctgggagaac caccacaagt cgcgagaagt acccgattac      1320
     aaggagatgc tcaagtttct tcaagatcac ctgaccacgc ttcagccact ggtcaacaaa      1380
     aagccacgtg tgcaggagca tcgccaggaa gctagcaaac caacccccaa gacgaagttc      1440
     ggctctacgc tcacgacaac aacaagctcc cagaacaaaa gttgtccatt ttgtcaaaaa      1500
     cccacccact ctcctttcaa atgcgaatcc ttcctcaagt tgaatccctt ccagaggtat      1560
     gagttagcca agaaaattgg gctttgtttg aattgcctca atcccttcca cttggcacgg      1620
     gcttgtccta gctcagcatg tcgagtttgt ggtcagcgac accacaccat gctccaccgt      1680
     cggtctacta acacaccaaa ccaggagctc acgttgccgc attccactac aaatgcccag      1740
     ttccaggccc agcctagtag agcctcaaat tcccaatcgc aatcgcaaac ctccgctccg      1800
     cctatgctac cctctacctc cgatcaaccc tcgctgtcgc tagctgcttg tacgccgaac      1860
     aatgccaacg ttgttttcct ctcgacggcc gtggtcaaga tcgcagactc tcatgggaac      1920
     acttacctcg ctcgcgcgct cctggattgc tgttcggagc ggaatctcat gagtgaacgt      1980
     ctggcgcaga agctggttct tcgccggcag aatgacccgc tgtcgctaca aggtgttggt      2040
     tccagtcaag cagtttcgaa gcagtctacg ttggccaaga ttctctctcg gtggacagac      2100
     tactccattg atctgaagtt ccacattttg ccggagttca ggctcattgt tccgtcggac      2160
     tgtgtgcaga cccagacctg gacgcaccca ataccatcgt cgttgttcct cgccgatcct      2220
     cgctttttcg aaccaaacca aatagatttg atcatcggcg ctgaagttca ctaccgtctc      2280
     ttgctgaatg gtttcattga tcttggaccg aacctaccca ttctcaagga gaccgtcttt      2340
     ggttggatcg tgtctggcaa gtgcagcacc tcgtccagac catcgtcgat cactatggtc      2400
     tgtagcaacg ccgatctgga gaaacaagtc gctcgttttt gggagttaga gtcgtgccac      2460
     tcagagagcg ttctttcggt ggaagaaaag cagtgtgagg agtacttcgc aaaaacaaca      2520
     tttcgggatt ctactggtcg ctttgtcgta cgtctgccca agaaggaagc tgtattggag      2580
     aaattgggcg agtcacgtgc gatagcagag cgtagattcc actacatcga gcgtcgactg      2640
     caaaacaaac ccacacttgg aaagtcgtac gcagcattca tcagggaata cgtagatctt      2700
     gggcacatgt cgatagttga tcctcgtaac gatgctcttc cagcccaagc taaaccgtac      2760
     tacatgccac accactgtat cgaacgaccg gagagcacca ctaccaaact acgcgtcgtc      2820
     ttcgatgctt cgtgtgcgac tgacactggt ataacgaacg atgcgctcgc agttggacct      2880
     gtcgtacaag acgacttgtt cagcctgatc ttacgctttc gcctcgagcc gttcgtgttg      2940
     gtagcagaca tcgaaaagat gtacagacag gtgttagtac atcccgacga tcggcatctt      3000
     cagcgtattt tgtatcgaga aagtcctact gaaccactac agacgtacga gctccgaact      3060
     gtaacgtacg gcaccgcgtc cgcgcccttt ctcgccaccc gctgtttgaa gcaactcgct      3120
     ctggaagaag agcacagatt ccctgaggcg gcaaatgtgt tagcaaggga cttttacatg      3180
     gatgatctac tttgcggggt ggaaacggca cgagaaggga tcgaactcag ccgtcagctt      3240
     attgagcttc tcgggtcggc cggctttaag ttgtgtaagt gggcttccaa cagctccaca      3300
     attctccaaa acatcccggc tgaacttcgc gaaaaccgca gtgagttcga actagattcg      3360
     tcgtcggcgc cgatcaagac cttgggactg ctgtggcaac cagcggacga cgtgttcctg      3420
     ttcaaggttc caatttggga tgttcgagcg ccaatcacca aacgtctggt cgtatcagat      3480
     accgctcggt tgttcgaccc gcaaggctta gttggaccgg ttattttgcg ctctaaaact      3540
     ttcgtgcaac agctgtggaa ggccaaggtc gcctgggacc gtattctggg cgaaaagcag      3600
     cagcagtact ggaaggagtt tcgcacggat ttggatgctc tcaacacgtt tacggttcca      3660
     cggtgggcgg cgcctggctc gcaacctgtc gaaacgcaac tgcacatctt ctgtgatgca      3720
     tcggaacttg gctacggagc gtgtgcgtac ctgcgaaccg agtcgggcaa tggaacagtc      3780
     tcggtcaacc tactaactgc caagtcaaga gtcgtttccc tcagcaagca aattaatctc      3840
     cctcgcctcg aactgtgcgg cgcactactc gctgctcatt tgtacgaaaa gatcgcaccc      3900
     aatctcccac caaacatccg agttttcttc tggacggatt caatgctagt cctccactgg      3960
     ctagccgcat caccctcccg ctggaagaaa ttcgtggcca atcgagtgtc ggagattcaa      4020
     gaggtcactg ctggacacgt atggctgcac gtacctgggg tggacaaccc tgctgatgtg      4080
     atctcccggg gaatgaccgc tacccaactc atcgactgta tgctgtggtg gcaaggacca      4140
     tcgtggctga ggcagagtag cagattctgg ccctgcatcg tgcgaacttc ggacgacctt      4200
     ttcgacaagg aacagctgga agaacgaccg gtcgtcgccc tgcctgctgt ggctgaaacg      4260
     agcatttttg gtgtcacttc gtcgctttcc gagctgattc gaaaggtagc ctactacaga      4320
     aggttttcct acaacgctcg tgggtgcaac caatcgaacc gcagagttgg acctctctcg      4380
     actgcggaac tgaacgaatc tctcctgtgc ctcgccaaac ttgcccaaca agaatcgttc      4440
     ccaaaagatt tgcacgccat ttgcaccaca ggtcaagtag aatccacatc caagctcaag      4500
     tcgttgtcac caatacttgt ggagggagtc cttcgtacgc gtggtcgtct tcaacacgct      4560
     gatgtgccct acgatcgcaa acacccgatc atcttggaca acaaacaccc tttcacactg      4620
     atgatcatgc gctacaacca tctcaagtac ctacacgctg ggcctcagtt gttgatcgcc      4680
     gctgtacgcg ccaagttctg gccacttcgc gctcgtgacc tggctcgaaa agttgtccat      4740
     gagtgcgttg actgttttcg ttgcaaacct cgcacatcgg accaaatcat gggggatcta      4800
     ccagctgtac gggtcttgcc aatcctgccg tttttgaact ctggtgttga tttctgcggg      4860
     cctttctacc tacgaccacc acatcgcaag gccgccccac agaagtgttt tgtggccgta      4920
     ttcgtttgta tggcaaccaa ggcagttcat cttgaacttg ttggcgacct ttctgctgac      4980
     tcattcatcg ccgctctgaa gagatttgcg gcccgtcgtg gagtgccgaa gacgctgttt      5040
     tgcgacaacg gcacaaactt cgtcggtgca cggcgcacgc tgaacgaatt cctgcggctg      5100
     ctcaaggctc agcaagtaca ggatcaggtc gtgcgcagct gttcggccga tggtatccag      5160
     ttccaattca tccctcctcg gacgccacac ttcggaggca tctgggaagc ggccgtcaag      5220
     tccctcaaga accatctacg ccgtactgtc ggcaacgcaa acctgactgc tgagcagatg      5280
     tccacctttc tcgcccaagc tgaagcctgc ttgaactcgc ggccacttac gccgatctcc      5340
     aacaacccgg acgatctgga cggacatttt ctggtgcaca gaccgctgat cgccataccg      5400
     gaaccttcgt atgaggagat tgctacgaac cgcctgtctc agtggcagat gatccaggag      5460
     taccttcgtc gtctgtggaa acgctggtcc acggaatacc tctccggcct tcagcagcgc      5520
     actcggtgga ctcgcgaaag agacaacatc cgcatcggga caatggtcct ggtgaaagag      5580
     gacaatcttc cgccgcagaa gtggcgcatt ggcagagtca tcgagatctt ccccggcaac      5640
     gacgggcatg ttcgtgtcgt caagcttcgc acaccggacg gcgtctacac gcgagccatc      5700
     actcggctct gcgtcctgcc gatcgacgac aatcagcagc cggctcagga ctcacagtag      5760
     ttcctgtcgt tcgtggttcc agaaaagaac gctttgttgg atgtggaggg ggcctgatgg      5820
     tcctctcaca agttaagtat ctaccgtttt tctggaccac tcctaccgac ctaaagtcct      5880
     gcctcgtctc tgtagaacct cgtaccaact gtcctgccct gctgatttgt tcgtgttgtt      5940
     cgcggtgcca gaaaaccctg cattgttgga ttgggagggg gtctgttgac cctctcacaa      6000
     gttaagtttc taattaattt tctggaccgt gccttctcgc cctgaagtcg tgtctcgtat      6060
     ctctagatgg actgcccgac ctgcccgacc tgcgcggcct gcgcgacctg ctcgacctgc      6120
     tcgacctgcc tgacctgctc gatctgctca accagcacag ccagcctgga ggacctgctt      6180
     gatctgctcg acctgctcca ccggctcaac cgacctgttc gacctgctcg agctgcccga      6240
     tctgccagat cttcctgatc tgcacagctg ctgacgttcg cggtgccagc aaacaacgca      6300
     ttgtttggat gtgagggggc ctattggtcc tctcacaagt taagtatcta attatgtttc      6360
     tggaccgctc tacccgacct aaagtcgtgc ttcgtatcgc taggaaatcc aactgcactg      6420
     cggaaaagtg ctcgaacggg acatcgacat cttcgagagt tccgaccatt caacccccag      6480
     ccgttggtcg tggaacctgg tgacgtctcc ggcttttcta cccacaacct ttggccgagg      6540
     agaagctgtg ttccagatca tcgccagaag attgtgaagt tattgaaaat tgatttgtgt      6600
     ttagattaag cagaaattag atcatgttta ggtgttagtt tagaattccc caccaccaga      6660
     ttagatttag attttcgatt gaaacttgca tttcaatggt gggcggaa                   6708
//
ID   BEL-23_CQ-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   AAWU01010308;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_CQ_;
KW   BEL-23_CQ-I; BEL-23_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-338
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 200-200 (2011).
XX
DR   GenBank; AAWU01010308; Positions   15947   15610.
XX
SQ   Sequence 338 BP; 105 A; 84 C; 61 G; 88 T; 0 other;
     tgttaaggcg caggtcaaat gtgaccaacc aaattttctc gtgtccaaca aatcgatcaa        60
     tgatcgcgat cacgcacaca ctaattagca cacattagcc tacataattg gcctgcggcc       120
     cttttgtttt aagatttcta tcagtcgaat aaagccaatc gaagagtgta caacttagac       180
     tctatcgcga acaataaagt taagtgcaca tctcgtcgcg cctttttgta ctacccaagc       240
     cgtacttttt aagtagtttt gatcgcgact agaaccgcgg aaagaattcg aacgatcact       300
     ttaagccacc tacaatccgg cgaatcagtg cacaaaca                               338
//
ID   BEL-23_DEl-I repbase;    DNA;    INV; 3935 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_DEl-I;
KW   BEL-23_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3935
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (25-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A old, highly degenerated sample sequence.
XX
SQ   Sequence 3935 BP; 1124 A; 976 C; 818 G; 1011 T; 6 other;
     aaaattattg gtccttcgag ccggatagcc agtaacctgt ttgcattcgg gacattttaa        60
     ttaaatttga atttgtcaac ggtgatctat agaatcctac atcgtataga accgtctctt       120
     cgccttgatc gccatgcgga gagtgattca acagcggggc ttttgcaaaa gccaaattac       180
     tcgggcgcat aagagggttg ggaaaacccc gaggatgata tatacgaaga gaaacattac       240
     tcaacttatg caatactaag taattctctt gaggaattaa aggcgctgat aaaactgtac       300
     tgcttcccga tgaaaccctg aacgattctc ataggagccg agtggatttt caattcgagc       360
     gaatcatatt cccaaacttt tcgggaaatt atgaggactg aacacatttt tctgatatgt       420
     ttttgggatc gatcggcaca aattaaagtt tcactgattg ccaaaaattg cattatctga       480
     aatcctatct atctgccgat gcgctcgcat taatcaaaca tctacccgtt acgaatgaaa       540
     attacagtga agcctgggac aaattggaaa aacgatacaa caaacaatca ttaatttacg       600
     atcgtttctg aacagtttta taacgctacc tagtgccact accagtaaca ttaataccgt       660
     gcggaaattg gctgactgcg cagacgaagt aattcgtggg ttgcgggcca ttcaatgtga       720
     acaacgagac ccttggtcca gtgtgaccat ctaccaattc ctggaatttt tgacgtcaca       780
     ttgcgacacc ttacaagcct gccaactcgt tcgtgcgcca caagatcgac gatcagctgc       840
     gactagaaga acactcatcg tgccagcaga atcatccact ttttaggtgc aaccaattcc       900
     tcgcactgga catcgcaaat cgacgcaaat cctgaagacc acaaagctgt tttaattgcc       960
     ttagcgcctc acatatggtc ggcagttgta ccaccgcaaa catcacacac tggtccacgc      1020
     ctcgccccgg caagttcaaa atagaatcta cgttgaagaa acaagcgtta accgtaacga      1080
     actacccaca acctcccgag ctgcgtctgc actcgtaacc tatcaacagc gcctctaaaa      1140
     agacccagca acggggagag taccctagac acgggatcca ccattgcttt ggcatcggaa      1200
     tcatatgttc agaggatagg tgtgcctcga acgcacgcac ggatttcagt tcttggccta      1260
     gcagccaact acgcagatct tactcgcgga cgcgcacact ttaagctgcg atctcgacat      1320
     tcggagaagg tcatcgaact ggcctccttc atattgacat cattgacgtc atcgcttcca      1380
     gcgcaaacga tcgacactac atctcaagcg tggaaacaaa ttacggcgct tcttctagca      1440
     ggtcccacat tctgcacccc aggagctata gatgtcatcg ttggatcaga tcaactttgg      1500
     tctctataca ccggcgatag aaaacagttt ggtaagggct atcctgaagc actcaataca      1560
     atgtttggtt ggattattgc atgatcttac aatgcatcca acggccataa gattccggct      1620
     gtgacacatc acgcggatct tgacatggtg gtccgatctt ttatggagat gcacagtctt      1680
     cattttgcga aaatacacac ccgctctgaa gacggagcgt atattgtcga gtatcctttc      1740
     gagtcaactc taccacaggc cacaaatcgt ctattttcat tggagcgaaa attccgccac      1800
     aatccgcaac tcaaacagca ttacgagtag tttttggacg tggtcacatg gaacagctga      1860
     cattagctca aatcgaagaa aaccctaaca cctgtgttta ccttccgcat cacgccgtca      1920
     tcaagatgaa tagcctgact accaagtgtc ggatagtttt cgatggatcc ggaaaatata      1980
     gttcttgaat ttcgctaagc gatagacttc atgttggacc cccaatccag ctctgagttt      2040
     ttttaagatt ccggcagcac cgatatgtcc catatgcgga tttcgaaaag atgttcagat      2100
     gaaatgaaag taagcccatt agtcgttttc ggcttttgac cgtcacttat gacctagcac      2160
     cctctccatt tctggttttt agagcgttaa agcagttagc cgacgatcat cgccatgagt      2220
     gaccagcatc atcacgtgcg ttgtcctacg atgcctatgc tgacgatata ccaactggat      2280
     aggaaagttg aaaacttatt ggttctcagg acgaaccttt tggacaaagc gaaattcaag      2340
     ttacggaagt ggagttataa ctgttggcgc cttctgcaac ctttgcttga aacggatcga      2400
     tgttatgacc ttgtacaact cagctaattc gtgattgaat cgttaaaatc cttggaattc      2460
     aatggaaccc atgtcgcgat gcgatgttta taaaaacaac tgatttcaac ctctgctctg      2520
     atccgacaaa gcaagaattg ttatcgcaac tttccaagat ttatgatccc ctaggccttg      2580
     ctgcgcgtag tgggggcaac tcatctttca agaaagttgg acggctgtta cgcactggaa      2640
     cgacccgatt cccgaaacct taaactcacg ctggagagca gtagttgagg attttccatc      2700
     cataaaacac tgtaaagtgc ctcgatacac tggttcacca tttcaacaaa tccaattgca      2760
     cggattcgcc gacgcgtatg gggcggtcgt ctacagccga gttgcatttg cggaaaggtt      2820
     ccatataacc ctcattgccg acaaaacacg agtgtcaccc ataagggccg tatcgattcc      2880
     acgcttggaa ttaaacgctg accttcttct taggaaattg cttactatta tcaagacttc      2940
     attagcaatt cctatttaca gcaccagctg ctggacgaat tcagagatag tgctccactg      3000
     tctgtctcca ccaccacggc actggaactc atacgtctgc aacagaacgg ctgagatcct      3060
     gaacgactac ccgaggaacg tgcagcaaaa cctaccaccc ttcatagctt tcctgatgat      3120
     tcgacgaatt actcatcaac aagatttctt ttaagagtaa ctagctattg ctttcgcttc      3180
     atcatccgcc ttcgtctaaa gtaaagccct tcttctgagt actgagtatt tcaatggagc      3240
     tgctgacagc gcgttgcaaa cttctccggc atattcaaca aaaggccttt caaaaggagt      3300
     acacacagct cgacaatgga cgccagctcc acgcaaaatc gcagctgatt cgattttctc      3360
     catttctgga tgatgagaaa ataatgcttg ttggtggacg aaacgagaaa ccgtctctta      3420
     attacaacgc caagcatgct attctgattc caaagaactc tccaatcgct gagctactcg      3480
     ttcgacattt tcatgttatg taccagcaca ctggagtgaa tgctacgttc acgcatcttc      3540
     gtcaacagta ctggattctg gattcgcgca acattgtgcg aaaggtggtg gtgcaaacac      3600
     tgtttccttc aacgaaaaag cacaaataac cagatcatgg gagatttacc aacacctcga      3660
     gttcaagcaa gctgctttaa acataccggt ttgcatgagc gtaccaaatg gcaactggag      3720
     aacgagaact tgaaggtcga caccctggtc gtacttaagg aacccacatt tacccccatc      3780
     caaatgatcc taggacgtat tacggaagtg cacaccggmc aagacgwmaa ggtccgggtt      3840
     gttacagtaw aaaccgckca aggagtcttc aaacgtccaa taacsgaaat ggcagtctta      3900
     cccctttgct gaacaactgt tcgggggggc cggta                                 3935
//
ID   BEL-23_DEl-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-399
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7048-7048 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 399 BP; 117 A; 90 C; 62 G; 130 T; 0 other;
     tgtttgggaa ccagacaccc tatacgttta ctttgtttat cttatcttat aagcgcagtt        60
     cgatgcgtta tctatcattg tattatatcc acactcacac gagcgcatga agcgcaactt       120
     aattcatatg tatatgtaag agctttgacc aactgcattg tcttaggtag tacttttcca       180
     ttcatctcaa aacggtaaca tgtttacgaa ctaattcaga ctattcttct atgactctgc       240
     cattcttgta ttactctgcg aacctaagtc agtcacattt ttgctaccaa cgcaaccaca       300
     gcgcagcgcg cgtatcgacc catttaattt agaatgttcg gtgaatgcaa ataaagatca       360
     aaccaaacag ttacactatt ggcgtatcat ttattaaca                              399
//
ID   BEL-23_DTa-I repbase;    DNA;    INV; 8312 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   15-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8312
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5693-5693 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1018..8073
FT                 /product="BEL-23_DTa-I_1p"
FT                 /translation="MLSDQTIALIKRQVEITNASKALEDLPSLSFEYLKKF
FT                 DELKAECMENHKALMHIGVVAHDYFTKNHYEQMLSIFNKIKMRIDTVLAES
FT                 DKSDGKLMVKEQNIETNLNCESQLDTAIEQLEKYLKDTFEDIQNDKFQTFE
FT                 IRIGKINFYWDKLVLLKQGNTTDVTIKRYTDILEELAFDISMVTKDMRKKL
FT                 EKIVPNKVEVGNHKIDDLPTLPKIQVPTFYGDSKDWDLFYELFNELIHLRE
FT                 DLSPSLKFNYLKISLKGEARNVVSHLLLGSGXNYEAAWELLTKRYENKRKI
FT                 FSDQINRLLDLQNLNVESVRQLRMFIDTINESIHMIKLKAQISDEVDIVFA
FT                 HIIIRKFNKEALQLYESHVKKTKEIQALSDVIEFLEQRLSSISSVQDEKPA
FT                 KKVFSSNMKELSTNSCPMCKSTGHLILQCQKFKALNPSERMEKVKKAHLCF
FT                 KCLKHSYSKKCQSDISCSICKKNHHSMLHIYVKSKTDQKVEKTNENKVNSC
FT                 MTSDQALLATARIQIQTSEGGFENFRALIDSGSQSTIISEESAQILKLPKI
FT                 RSQTEISGVSSTGKCISKHKINLSIKRNNSQKTIRVEALILPKLMRALPVN
FT                 TVNVDKTKWEKYTLADPDFNKPGRVDLIIGADLYTHILQNGVVKINGLLGQ
FT                 KTDFGWIVSGCKKSKGKKTIVATTIELKDMDRYWEVEEEDKNDIESEICEN
FT                 HFIKTTKKGSDGRYIVSIPFKDDVTLGDSKKQAMARFMNLEKKLKRNEKLR
FT                 LDYAKFMHEYMDLGHMVEVQEEGKYFLPHQAVIRDSSLTTKLRVVFDASAK
FT                 TTNNKSLNDIMWVGPRVQKDIFDIIIKWRKWEFVVSADVEKMYRQININDN
FT                 DXQYQYILWRDSPDEKIKNYKLTTVTYGTASAPYLATRVLVDIADKCKNKD
FT                 VSEIIRNDFYMDDLMTGADSIEDANNLIKLISQELQXVGMNLRKWISNSSK
FT                 IMETVEDTGDNKVLTLVENESVKTLGLQWEPQKDLFKFKVNCGDSKNINKR
FT                 IVLSTLSKIYDPLGWLAPVTILGKLFIQKLWINKSEWDQELSKEDKDYWVN
FT                 FKENLLLLEQIRIPRWISSKNCSIIQLHGFADASEKAYAAVVYAKVGNCVN
FT                 IIASKSRINPIKNRKTIPKLELCAAHLLSELIKRIIESINTKVEIYAWSDS
FT                 TITLAWIKNGDSKVKFIRRRTDDIRKLTNTEWNHVKSEENPADLSSRGICS
FT                 SQLTTCDLWWKGPKWLSEPKEHWPRQQSKEDVVMVNSILNNKTDDPIYKLL
FT                 EKFSSVEKIIRIIVYLNRFIQSKTKKESYPSFLSVKELKRAEKIIIKKQQE
FT                 YQFSLEIRCLETKKEIKTSNRILSLNPFLDKDGILRVGGRLQNSNAEFEVK
FT                 HPIILDKCHLTNLLIQKAHKETLHGGINLMRNYIQRKYWIFGLKNSLKKYL
FT                 RECVKCARYRQNTAQQIMGNLPKYRVTMSYPFLNTGVDYAGPYFVKCSKNR
FT                 GLKTYKGYIAVFVCMATKAIHLEMVSDLTSDAFLAALRRFVARRGKVANIY
FT                 SDNGTNFVGASRKLDQELVKAIKENTMIAAQLEKDRIDWHFIPPAGPHFGG
FT                 IWESGVKSMKHHLKRVIGENSLTYEEMSTLLCQIEACLNSRPLYTSENEMD
FT                 QHEVLTPGHFLIGRPPLEIVEPIEDEKIGNLDRWKLIQKIRRDFWVKWKEE
FT                 YLHTLQQRNKWKRESPNIEKGQIVLLKDENSHPARWPMGKVEKIHKGKDEK
FT                 VRVVEVKLQDGFITRPISKICPLDGVKSVDKMESDPEETKPKRQTRGTSKI
FT                 SKLGFVMAMLLFIFCQFANASAKVDQPRYAIEKINXTSAIYLDPMGDVEIV
FT                 ASSWNLIIFYNMDVYFEMLKKGKELIPKMRVICERLHSFEDQCLLVLSNTE
FT                 RQISDIEENNKLFMAQGKSRSKRAPFGFMGSLYHILFGIMDEDDRIQMEDN
FT                 MKNLLSNQHSLNELSRKQTSLVDSTTNILKKTTDEVNSNFKGMNERIKNMT
FT                 AVLQESYYVYKESINFFMITKQLSNIIDECEKIQYGIISLLIDINHGRLNT
FT                 NILRPSQLKGEISRIKDSLSENLVLPGKRTGTELKEVYTLLTARGLFVDKK
FT                 LIINAKIPLFGRHASVLYKIIPVPVKLDDRMITVHVDSQYLIYNFEIDAXH
FT                 LMAESTINKCQRWQSNKRVCEGSWPWSSANDNSCEIKPLKPNKASNCRYKS
FT                 IVESKSYWVELEKKSSWLFKVQNNSKARIQCSNSKIEIIDLPEQGIMTLRS
FT                 DCTARTDDKILVAQHSIQLEDQGTLALSYIGEVNEIPKIIWNPLDMPLINH
FT                 TDEINRLSKEIQYLKTHKLELRELDFHHVTGHASLILAIVIIIILIVYFIR
FT                 KIKIRRQLQAIALPSGMLNI"
XX
SQ   Sequence 8312 BP; 3192 A; 1256 C; 1588 G; 2254 T; 22 other;
     ttttggtcct tcgacaactc tgcagttttc ccccaccagt ggtaagagac tcagaactta        60
     ggccagcacc taaaaaataa aatctgtaac acttacagtt ttgtttaagg tgttaatgaa       120
     taattgactc ttgttgtccc ccaccagtgg taagaaacag agtaaaaaat ttataaaaat       180
     caaaaagata taaaagaatc ttttctgatc aataaaaaat taattcaact atagtattgc       240
     aacaaaaaag tcaaagtttg ttgtgaaagt ggtcgagaaa tcgacaaatt acaaaataaa       300
     aataattttg ccatcgagca attattattt ttggcgtttt cgaggccttc aaacatcgaa       360
     aaagtgattt aataaaatca ggcgtattcg aggccgacat cgaaaaagtg atcacgggtg       420
     taaaaagtga ctcccgaagt tacaaataaa aagtgactcc taaatttaat aatatcaaag       480
     tgaccccaaa aagaaattca aataagaagt gactcccaaa tttattgaaa aaataacgaa       540
     aaaaagtcgt atcaaaaagc taaactttgg acgggtataa taatatcaaa gtgaccccaa       600
     aaaataaaat aaatacaaaa aaataagtga ctcccaatat aaaaaccaaa gcaataaaaa       660
     tcccaaaaaa tctgaaaaaa aaaaaaaaaa aactcaaatc atctttaaac ctgcatacaa       720
     ggactccagg acttcagcac gtctacgact actacaacta caagagcgag gacagcatcg       780
     gaacaactag cggaaaaaac aaaacatcga agattcagca gcgacaacaa cagcggcaaa       840
     aatatatagg atcagataag tcctatatat caaattmaat tttttttttt aaatacaaat       900
     attatattat tacattatta ttattatatt atattattat ataaaaatat tatttaagtt       960
     ttcgagaact aaattcaagt ttaaataatt acaaataaag taaaaagtat atataaaatg      1020
     ttgtccgatc aaactatcgc actgatcaaa aggcaggtgg agatcacaaa cgccagtaag      1080
     gcgcttgaag atctcccgag cttatcattt gaatatttga agaaatttga tgagctgaag      1140
     gccgagtgca tggaaaatca caaagctttg atgcatattg gagtagtcgc gcatgactac      1200
     ttcactaaga atcattacga gcaaatgctc tctattttca ataaaattaa aatgcgaata      1260
     gatacagtgt tagctgaatc tgataagtcc gatgggaaat taatggtgaa agagcaaaat      1320
     atagaaacaa atttaaactg cgaaagccag ttagatactg cgatagagca gttagaaaaa      1380
     tatttaaagg atacttttga ggatattcaa aatgataaat ttcagacttt tgaaattagg      1440
     attgggaaga ttaattttta ttgggataag ctagttcttt taaagcaggg aaacactacg      1500
     gacgtcacga ttaaaaggta tactgatata ttggaagaat tagcattcga tatttccatg      1560
     gttaccaaag atatgagaaa aaaactcgag aaaattgtgc ctaataaggt agaagttgga      1620
     aatcataaaa ttgatgattt gccaacgcta cctaaaattc aggtacccac attttatgga      1680
     gattccaaag attgggacct attttatgag ttgtttaatg aactcataca tttaagggag      1740
     gatctcagtc cttccttaaa atttaattac cttaaaatct cgcttaaggg agaagccagg      1800
     aatgtggttt ctcacttatt gttgggatca ggtgawaact atgaggccgc ttgggaattg      1860
     ttaaccaagc ggtatgaaaa taaaaggaaa attttttccg atcagattaa tcgccttctt      1920
     gatctccaaa atctaaatgt ggaatcagtt cggcaattaa gaatgtttat tgacacaatt      1980
     aatgagtcaa ttcacatgat aaaattaaag gcacaaattt cagacgaggt tgatatagtc      2040
     tttgcacaca taataatcag aaaatttaac aaagaagctc tgcaactata tgagagccat      2100
     gttaaaaaaa cgaaagaaat tcaagcattg tccgatgtca ttgaattttt agagcaacga      2160
     ctcagttcga ttagctcagt tcaggatgaa aaacctgcta aaaaagtgtt tagtagcaat      2220
     atgaaagaat tgtctactaa cagttgtccg atgtgcaaaa gtacgggaca tttgatacta      2280
     cagtgtcaaa aatttaaggc tttgaatcca tctgaacgga tggaaaaagt aaaaaaggca      2340
     catttgtgtt ttaagtgcct taaacactct tatagtaaga aatgtcaaag tgacatttca      2400
     tgctcgattt gtaaaaaaaa tcaccatagt atgctacaca tttacgtcaa gtctaaaaca      2460
     gaccaaaaag tagaaaaaac gaatgaaaat aaagtaaact cgtgtatgac atcggatcaa      2520
     gcgttgctag ctacagcacg cattcaaatt caaacctctg agggaggttt cgaaaatttc      2580
     cgagctttga tcgacagtgg ttctcaaagc acaataattt cagaagaatc tgcgcagatt      2640
     ctgaaattgc ccaaaattcg gtctcaaact gagatcagtg gagtatcgtc cacgggaaag      2700
     tgcatctcga agcacaagat aaatctttca attaaacgaa ataattccca gaaaacgata      2760
     agagttgaag cacttatact tccaaaacta atgagggctc tcccagtcaa cactgttaat      2820
     gttgacaaaa caaagtggga gaagtacact ttggctgacc cagactttaa taagccgggt      2880
     cgtgtagatc tgataattgg ggcagatcta tacactcaca ttctgcaaaa tggagtggtc      2940
     aaaattaatg gcctcctcgg tcaaaaaacc gatttcgggt ggattgtctc tggatgcaaa      3000
     aaatccaaag gtaagaagac aatagtagca accaccatcg aattaaaaga tatggatcgg      3060
     tattgggaag ttgaggaaga agacaaaaat gatatcgaat ctgaaatatg tgaaaatcat      3120
     ttcataaaaa ctacgaaaaa aggttcagat ggtcgataca ttgtgtcaat tccatttaaa      3180
     gatgatgtca ccttaggaga ttcgaagaaa caagcaatgg ctcgtttcat gaatcttgag      3240
     aaaaaattaa aaagaaatga gaaactaagg ttggactatg ctaaattcat gcatgagtat      3300
     atggatttag gtcatatggt cgaagtgcag gaagaaggaa agtacttttt acctcaccag      3360
     gcagtaatta gagattcaag cctgacgacc aaattaagag ttgtttttga tgcttcagca      3420
     aaaacaacaa ataataaaag tttgaacgac ataatgtggg ttggtccacg agttcaaaaa      3480
     gatatttttg acattatcat taaatggcga aaatgggaat tcgtagtwtc tgcggacgtt      3540
     gaaaaaatgt atcgtcagat aaatattaat gataatgatc wacagtacca atatatttta      3600
     tggagagatt ctccagatga aaaaattaaa aattataaat tgacaacagt cacatatggt      3660
     acwgcatctg caccatattt agctactaga gttctagtag atattgctga taaatgcaaa      3720
     aacaaagatg taagtgagat aattaggaat gatttttata tggatgacct aatgactggg      3780
     gctgattcta tagaagatgc caataattta attaaattga tttctcaaga attacaaaaw      3840
     gtgggaatga atttaagaaa atggatwtcg aacagttcaa aaataatgga aactgtagaa      3900
     gatacaggag ataacaaggt tctcactctt gtggaaaatg aaagcgtaaa aaccctgggg      3960
     cttcaatggg aaccgcagaa ggatttattt aaattcaaag taaattgcgg ggactcgaaa      4020
     aacatmaaca aaaggatagt gctatcaaca ttatcmaaaa tatatgaccc tttgggatgg      4080
     ctggctcctg taactatttt aggaaaactt tttattcaaa aactatggat aaataagagt      4140
     gaatgggatc aagaattatc caaggaagat aaagattatt gggtaaattt taaggaaaat      4200
     ttattgcttt tagaacagat tcgaatccca agatggatta gttcaaaaaa ttgttcaata      4260
     atacagcttc atggatttgc tgacgcttcc gaaaaggcat atgcagcagt ggtatacgct      4320
     aaagtaggga attgtgtaaa cataatagcc agcaagagta gaattaatcc aattaaaaat      4380
     agaaaaacta ttcccaagct agagttatgt gcagctcact tgcttagtga attgatcaaa      4440
     cgaataattg aatccattaa taccaaagta gaaatctatg cttggagtga ttccactata      4500
     actttagcat ggattaaaaa tggtgatagt aaggtcaagt tcattagacg aagaacggat      4560
     gacattcgaa aactaactaa taccgaatgg aaccatgtga agtctgaaga gaaccctgca      4620
     gacttatcat ctagaggaat ttgttctagc caactgacca cctgtgattt atggtggaaa      4680
     ggtccgaaat ggctatctga gccaaaggag cattggcctc gacagcaatc caaagaagat      4740
     gtggttatgg taaattctat tctaaataac aaaaccgatg accccattta caaattatta      4800
     gagaagtttt ccagcgttga aaaaattata cgaataatag tatatttaaa tagattcatt      4860
     caatcaaaaa ctaagaaaga atcctatcct tcttttctat ccgtaaagga gctgaaacga      4920
     gctgaaaaga tcattattaa gaaacaacag gaatatcaat tcagtctaga aataaggtgc      4980
     ttggaaacaa aaaaagaaat taagacaagt aataggatat tgtcgttgaa tccattttta      5040
     gataaggatg gtatacttcg agtgggaggg agactacaaa actccaatgc agaatttgaa      5100
     gtaaagcatc caataatttt agacaagtgc catttaacaa acttattgat ccaaaaggct      5160
     cataaagaaa ccttgcatgg aggaataaac ctaatgcgaa attatatcca aaggaaatat      5220
     tggattttcg ggctaaagaa ttccttaaag aagtatttga gagaatgtgt gaagtgtgct      5280
     aggtacagac aaaatactgc tcaacaaata atgggcaatc tgcctaaata cagagttacg      5340
     atgtcctacc cattcttaaa tactggagta gattacgcag gtccttattt tgttaaatgt      5400
     tccaagaatc gtggactaaa aacatataag ggatacatag ccgtatttgt gtgtatggcc      5460
     accaaagcca tacatctaga aatggtaagt gacttaacct cggatgcatt tctagcagcc      5520
     ctaagaagat ttgttgctag aagaggaaaa gttgccaaca tctattcaga taacggaaca      5580
     aatttcgtag gagcttcaag aaagttagat caagagttag ttaaagcaat caaggaaaac      5640
     acaatgattg ccgcgcagct tgaaaaagat agaattgatt ggcattttat ccccccggca      5700
     ggacctcact tcggaggtat ttgggaatct ggagttaaat ccatgaagca ccatttgaaa      5760
     cgggtaatag gggaaaacag tctgacgtac gaagagatgt caacactttt atgtcaaata      5820
     gaagcatgct taaattcgag accattgtat acttctgaga atgaaatgga tcaacatgaa      5880
     gtattaactc caggtcattt cttgattggt agaccaccgt tagagattgt tgaaccaatt      5940
     gaagatgaga aaattggtaa tttagatagg tggaaattaa tccaaaaaat tagaagagat      6000
     ttctgggtta aatggaaaga ggagtatttg catactctac aacagagaaa caagtggaag      6060
     agggaaagtc caaatataga gaagggacaa attgtattgt tgaaggatga aaacagtcat      6120
     ccagccaggt ggccaatggg aaaggtggaa aaaatccata agggtaaaga cgaaaaggtt      6180
     agagtggtag aagtkaaatt acaagatgga tttatcacca gaccgataag caagatttgt      6240
     cccctagacg gagtaaagtc tgtcgataaa atggaatckg atcccgaaga gacaaaaccg      6300
     aaaagacaaa caagaggtac atcaaagatc tcaaaacttg gttttgtaat ggccatgcta      6360
     ttatttatat tctgccaatt tgctaacgca tcagctaaag ttgatcagcc aaggtatgca      6420
     atagagaaga taaataakac ctcggcaata tatttagacc caatggggga cgttgaaatt      6480
     gtagcctcct cttggaattt aataatattt tataatatgg acgtttactt cgaaatgctt      6540
     aaaaaaggta aagaattaat accaaaaatg agggtaattt gcgaacggct tcatagtttt      6600
     gaggatcagt gccttttagt tctgagtaac acggaaaggc agatctcaga catagaagaa      6660
     aataataaac tttttatggc tcagggaaag tcaagaagta aacgtgctcc atttggtttt      6720
     atgggatcgc tttatcacat tctatttgga ataatggatg aagacgacag gatacaaatg      6780
     gaggataata tgaaaaactt attaagcaat cagcatagcc ttaacgagtt aagtaggaaa      6840
     cagacttcct tagtcgattc tacgactaac attttaaaga aaacgactga tgaagttaac      6900
     tcaaatttta aaggaatgaa cgaaagaatc aagaacatga cggcggtatt gcaagaatcw      6960
     tattatgtgt acaaagagtc tatcaacttt tttatgataa ccaaacagct aagtaacatt      7020
     atagatgaat gcgagaaaat tcaatatggt atcataagcc tmttaataga cataaatcat      7080
     ggccgactta atacaaacat attaagacct agtcagctaa agggtgagat ttcmagaata      7140
     aaagacagtt tgtctgaaaa tctagtcttg ccagggaaaa ggacaggcac agaattgaag      7200
     gaggtttaca cmttattgac ggctagaggt ttatttgtgg ataaaaaatt aataattaat      7260
     gccaaaatac cwttgtttgg tagacatgct tcagtacttt ataaaattat cccagttccc      7320
     gtwaaattgg acgaccgcat gattacagtg catgtagatt ctcagtactt aatttataat      7380
     ttcgagatcg atgcatwtca cctwatggca gaatctacta ttaataaatg tcaaaggtgg      7440
     cagtcgaata aaagagtttg cgagggaagt tggccttgga gtagtgctaa cgacaatagt      7500
     tgtgagatta agcctctcaa accaaataag gcatcgaact gcaggtataa atcgattgta      7560
     gagagtaagt catattgggt tgagttggaa aagaaaagta gttggctttt taaagttcaa      7620
     aacaattcta aggctagaat tcagtgtagc aattcaaaaa tagagataat agatttacct      7680
     gaacaaggaa taatgactct gaggtcagat tgtactgctc gaactgatga taaaatatta      7740
     gttgctcaac acagtattca gttagaagat cagggaacat tagcgttgtc ttacattgga      7800
     gaagttaacg agataccaaa gattatttgg aacccgctcg acatgccatt aattaaccat      7860
     acggacgaaa tcaatcgttt gtcaaaggaa attcaatact taaaaactca taagctagaa      7920
     ttgagggaat tagactttca ccatgtaact ggacatgcat ccctaatttt agcaattgta      7980
     ataataatta tattaattgt atatttcata aggaaaataa aaatacgaag gcagttacaa      8040
     gccatagcat tacccagcgg tatgcttaat atataaattt gtagatacaa taaatcaatg      8100
     akataaaaat gttttatgtt aaaaaataaa taaattcact aaaatgttaa aacacaataa      8160
     ttgcaagccg tgaaggggtg tcaaaattat tawgcaaaat aaaatatatc gaattaatac      8220
     agtccactaa ttttgtattg caatgttttt gagaataaat aaaataaatt gtaattaaca      8280
     cagacaccta atcttgccgg cccttgccag aa                                    8312
//
ID   BEL-23_DTa-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   15-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-396
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5692-5692 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 396 BP; 125 A; 82 C; 83 G; 105 T; 1 other;
     tgttcagacg aacactaata aaaataaamt ataatacttt atgagctctg tgcatgtcat        60
     gtgacagttg taaatcgatc cagagccata aactatgatc tgtaattgta gaccctacag       120
     gggagcggtg ctagcacttg taatctgtaa gtgcaggcca cttgagccaa accgaagata       180
     atcacttgag atgcttctca cactgcgcca agggttcctg tgcgggggtc aaaagataac       240
     tctcccgcgc aggcagacgc ggcctctgcg taggccacag ataagaccag aataagaatt       300
     tcatgttagt ttcctaagca gggacttaga aaataaaatt cagttttaat acagaactca       360
     actgaaaagg ttgttttatt taattcatcc ctttca                                 396
//
ID   BEL-23_SiCu-I repbase;    DNA;    INV; 5492 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5492
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4997-4997 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..5413
FT                 /product="BEL-23_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTRTRARTKALKTAMDQAKKNMELELAEVEQQLTDFN
FT                 TAIKAKPTVTADLEVLLATLDLQVADYMDALKIYLEHCTQNDKDDEYKAAV
FT                 KQRSDVRKKRLSSGAELSKLIGTTASASTGSSGGHAADVYRVNMPKRQLKK
FT                 FDGDVRNWRSFWASFKEIDSDAIIPDIEKYHILEEAMIPGTRPHQIVSSYP
FT                 PDGPSYTLAKNELEDKFGRQKTLIKVYMRDLLKLVVENAKDKKTYDFTGMV
FT                 TALTAQTRNLEQLGVTQDKFGVVLYAIVESCIPQEVLNRYLQRTGVKEEIK
FT                 EILDFLNEEVRRHDETELAQGSFTSTCKQEASKSINSGKGRQTTPTAASFI
FT                 NADNKPEKSCGFCGNGHATTECRRAVTMTYEQRKEAIKGKNLCFRCLNGGH
FT                 SSKFCKSKVICILCRKSHHVLMCWEAAKSSDQRQYNSNNNAKDKVDSDSKE
FT                 EKKRDNSNSSSPVNTPGTQLSSHSNYIQRPEVLLQTLNVRIRFGCGEKVIR
FT                 VMFDSGSQCTYIQKTLAEELKLPYLGKEQVIHQTFGAVVSKTVEHPVYKVE
FT                 ISGVHQPYQDWFTFNASAISKVATEIVSPPQGPWMTECGEKGIRLSDVTGT
FT                 PSDIDMLIGGDISPYLTVGLRSFLLPSNLIARESKLGWFLEGKIKGTESRR
FT                 SNKAMMCINLQLSNIDASKLWSLDVLGITDAAESRSRKELEEAALTHFRST
FT                 VEQKEDGRYRVHLPWIEGHPSLPNNRNHAVARLHKTTQDLVRDNRLEDYHN
FT                 IFMSWLEEGVIELAPPVNPSATVNYLPHRAVYKENSTTPTRPVFNASSKLK
FT                 NHVSLNECLETGPNLLERIPSIITAFRIEAVGVIADIKKAFLQIEVVEKDR
FT                 DNMRFVWWKELNNRTEITEYRHCRVVFGISSSPFLLGATLQHLLDKYEKEF
FT                 EHTVSLLRSGFYVDNAVVSLPSLEEARKFQEDAQAILSKGQFDLRGWEFGP
FT                 VEEEKLVPVLGLIWNTKEDTLQLDISRLEKKEHANPTKRTVLMYANSLFDP
FT                 LGWLSPFTIIVKMLFKEVCVDSRKFNWDTPLPEEFAKKLGNWSQQLPLVPE
FT                 IKIPRHVGPGSKEDWSLHCFNDASKLGYATCIYLRINSSPVRVILIQARAR
FT                 VTPEKVLTIPRGELLACLIGARLVTEVKKDMGIPEIPVTFYSDSTTALTWI
FT                 RRTDAVWGVFVNNRVSEIRRLTDISSWKHVPGSMNPADLPSRGVTLDKLIE
FT                 QKWWEGPTWLYEPESTFPNSDPEPDEELVAAEKKKTVVSALVKRTTPHFVE
FT                 GLLRLGDYHRILRVIAYVRRFVSKLKKRTASQAVGEISADEMKEAESVVIH
FT                 YIQRSSWGPRPPTGGFIYDIDNGHVLRIVTRLINGKDGADFQRPALLPGDN
FT                 PFVKLLIFKEHSLASHAGVQYMQSILREKYWITHSRRSIRNVLHKCPICRV
FT                 HIAKRCRVPEAPLPSNRIKTGRCFQVVGVDLAGPLYLRNGQKVWIVIFTCA
FT                 VYRAVHFEIVSSASTAAFINALRKFVARRGRPETIYSDNGTNFRGCQNLLT
FT                 KVNWKLIEQQAAVKQINWIFNPPTAAWWGGFWERLIGMMKQLLRRVIGKRT
FT                 VDLDELEVIILEAEAVMNDRPLTYLSEDASDLRPLTPSMFMKDLPVSILPD
FT                 VDSAAKELNRRFRYCLKLKDDLIRRFRSEYLGQLVSKAKSKKVDQLSPGDV
FT                 VLVEVDNKKRLEWPIAVVTQVFTGDGKKIAYSAKVKTSHGEFIRPLQRLFP
FT                 LELHGESLALPEESEVETKEEVDCDKDEILSEEEDFQVPESEEAEPFIVTR
FT                 AGRKIVKPDKLKY"
XX
SQ   Sequence 5492 BP; 1642 A; 1281 C; 1304 G; 1265 T; 0 other;
     ttgtgacgaa ctactgccag gatagaactc atctttaatt tgaaactgca cttaacagtg        60
     aatgacacgt acccgtgcta ggacaaaagc actgaagacc gccatggatc aagcaaagaa       120
     aaatatggaa ttggagctgg cggaggtgga gcagcagcta accgacttca acactgccat       180
     caaagcaaag ccaacggtaa cggcagatct tgaagtactc ctagccaccc ttgaccttca       240
     agtagctgat tacatggacg cgttaaagat ttaccttgaa cactgcaccc aaaacgacaa       300
     ggacgacgag tacaaggctg cagttaaaca acggagcgac gtgaggaaga agcggttatc       360
     atccggagca gaattgtcca aattaattgg aacaacggcc agcgcatcaa ctggatcgtc       420
     aggaggacac gctgctgatg tctaccgtgt caatatgcca aagcggcagc tcaagaaatt       480
     cgacggcgac gttcgcaatt ggagatcatt ctgggcgtct tttaaggaaa ttgactccga       540
     cgccatcatc cctgatatag aaaaatatca catactagag gaagccatga tcccgggaac       600
     tcgcccacat cagatagtat caagctatcc acccgacggc cccagctaca cactcgccaa       660
     aaatgagctg gaggacaagt ttgggaggca gaaaacgtta attaaagttt atatgcgtga       720
     ccttctgaaa ctcgtcgtgg aaaacgcgaa ggataagaag acctacgact tcaccggcat       780
     ggtcaccgca ctaacagcac agacgagaaa tctcgagcag cttggagtga cccaagacaa       840
     gttcggcgtt gtgctgtacg ctatcgtaga atcctgtatc ccacaggagg tactcaatcg       900
     ttacctacaa cgaacaggag tcaaagaaga gattaaagaa attctggatt ttctcaacga       960
     agaagtcagg cgtcatgacg aaacggaact tgctcaagga tcgttcacaa gtacctgcaa      1020
     acaagaggcc tccaaatcaa tcaactcagg aaaggggagg caaactactc caacagcagc      1080
     aagtttcatt aacgctgaca ataagccaga gaaaagctgt ggattctgtg gaaatggaca      1140
     tgcaacaacg gagtgcagac gagcggtcac catgacctac gagcaacgga aggaagcaat      1200
     caaaggcaaa aatctctgtt tccggtgcct aaacggtggt cactcctcca agttttgcaa      1260
     atccaaagtt atttgcatat tatgcaggaa aagtcatcat gtgctgatgt gctgggaagc      1320
     agccaagtca agtgaccaac gccagtacaa cagcaacaat aatgccaaag acaaggtgga      1380
     ttcagactcc aaagaagaaa agaaacgtga caacagcaac agcagctctc ctgtcaacac      1440
     accaggaact caactgtcgt cgcactcgaa ttacattcaa cgacccgaag ttctactaca      1500
     aacgttgaat gtaaggattc gttttggttg tggtgaaaag gtcatccggg ttatgttcga      1560
     ttcaggatcg caatgtacct acattcagaa gacgctagcg gaggagctca agttgccgta      1620
     tctgggaaag gagcaagtta tccaccagac atttggagca gtggtatcca aaaccgtcga      1680
     acatcctgtc tacaaagttg agataagtgg agttcatcaa ccttaccagg actggttcac      1740
     cttcaacgcg tcagccattt ctaaagtagc aacggaaatt gtctcccctc ctcaaggtcc      1800
     ttggatgacg gaatgtggcg agaaaggaat tcgcctcagt gacgtgaccg gaacgccaag      1860
     cgacatcgac atgttgattg gaggagacat ctcaccatat ctcacggttg gacttcgttc      1920
     ttttctgctc ccctccaacc ttatcgcaag agaaagcaag ctcggctggt tcctagaagg      1980
     caaaataaaa ggaactgaaa gtcgccgaag caacaaagca atgatgtgca ttaatttgca      2040
     actttcaaat atcgacgcct ccaaattatg gtcactggac gtgcttggaa tcactgacgc      2100
     tgccgagtcg agatccagaa aagaattgga ggaagctgcg ttaacccatt ttcgcagcac      2160
     agttgaacag aaggaagacg ggaggtaccg cgtgcactta ccttggattg aaggtcatcc      2220
     ctctctacca aacaacagaa atcatgcagt agcccgcctc cacaaaacaa ctcaagatct      2280
     cgtgcgtgat aaccgcctgg aggattatca caacattttc atgtcatggc tggaggaagg      2340
     agtcattgaa ttagcgcctc cagtcaaccc aagtgcaacg gtaaactatc tacctcatcg      2400
     agctgtctac aaggagaaca gcacaacgcc caccagacca gtattcaacg cctcctctaa      2460
     gctgaagaat cacgtctctc tcaacgaatg cttagagact ggcccaaacc tcttggaaag      2520
     gatcccctcc atcatcaccg cattccgcat tgaagcagtg ggagtaatag cggacattaa      2580
     aaaggctttt ctccaaatcg aagtggtgga aaaggatcgt gacaacatgc gctttgtttg      2640
     gtggaaagag ctcaacaaca gaacggaaat tacagaatac cgacattgcc gtgtggtatt      2700
     tggaatttcc tccagtccat ttttacttgg agctactctt caacatttac tggacaagta      2760
     cgagaaagaa tttgagcaca ccgtcagtct ccttcgatcc ggattttacg tggataatgc      2820
     tgtcgtcagc ctaccgagtt tggaggaagc aagaaaattt caagaagacg ctcaagcaat      2880
     cttgtccaaa ggccaattcg accttcgagg gtgggagttt ggaccagtgg aggaggaaaa      2940
     gctagttcca gttttaggat taatttggaa cacgaaggaa gatactctcc agctggatat      3000
     ttcgcgtttg gagaagaagg agcatgctaa cccaacaaaa cgcaccgtac tcatgtacgc      3060
     aaacagcttg tttgaccctc tcgggtggct atctcctttc acaattattg tgaaaatgct      3120
     atttaaagaa gtctgcgtgg actctcgcaa gttcaattgg gacacgccat tgccagaaga      3180
     gttcgcaaag aagctgggaa actggagcca gcaattgccg ctagttccag aaatcaaaat      3240
     accaagacat gtcggaccag gctcgaagga ggattggagt ttgcattgct tcaatgatgc      3300
     aagtaaattg ggatacgcca cttgcatcta cttacggata aactcctccc cagttcgtgt      3360
     catcttaatt caggccagag ctcgtgttac tccagaaaaa gtcctcacaa ttccaagagg      3420
     agaactactc gcttgcctga ttggagcccg ccttgtcacc gaagtcaaga aggatatggg      3480
     aatccccgag attccagtca cattttatag tgactccacc actgctctca catggatacg      3540
     aaggactgat gccgtgtggg gagtctttgt taataatcgc gtcagtgaga tacgccgcct      3600
     cactgacatt tcttcttgga aacacgttcc cggttccatg aaccccgccg acttgccatc      3660
     cagaggagtt accttggata agctcattga acagaaatgg tgggagggac caacctggct      3720
     ctacgaacca gagtccacgt ttccaaattc tgatccagaa cctgatgaag agctcgtcgc      3780
     cgcggaaaag aagaagacag ttgtctctgc tctcgtcaaa aggacaaccc ctcattttgt      3840
     ggaaggacta ctgcggctgg gtgattacca caggattcta cgtgttattg cctacgtacg      3900
     aagatttgtg tcaaagttga agaagcgcac cgccagccaa gcagtgggag aaatatcagc      3960
     tgatgaaatg aaagaagcag aaagtgtagt tatacactac attcagaggt catcatgggg      4020
     tccccgtccg cctacaggag gatttattta cgacattgac aatggccacg ttttgcgcat      4080
     tgtcacacgg ctcatcaacg gcaaagacgg agcggatttc cagcgaccag cgctacttcc      4140
     gggggataat ccatttgtca agctcctcat cttcaaggag cattcactcg cctctcatgc      4200
     tggtgtccag tacatgcagt cgattttacg agagaaatac tggatcactc acagcaggag      4260
     gtcaatacgt aacgttttac acaagtgccc catttgtcgg gtacacattg caaaaagatg      4320
     ccgagttcca gaggcccctc tcccttcaaa ccggatcaag actggacgct gttttcaagt      4380
     tgttggagtg gatttggctg gccctcttta tctacgtaat ggacaaaagg tgtggatcgt      4440
     catcttcacc tgtgcagttt acagggcggt ccatttcgaa atcgtttcat cagcatcaac      4500
     agcagcgttc ataaacgcac tccgcaagtt cgtggctaga agaggaaggc cggagactat      4560
     ctactccgac aacggaacga attttcgtgg atgtcagaac ctgctcacaa aagttaattg      4620
     gaagctgatt gaacagcaag ccgctgttaa acaaattaat tggattttta atccacccac      4680
     tgctgcctgg tggggtggat tctgggagcg actcattgga atgatgaagc agctgttaag      4740
     acgcgttatc gggaaacgta cggtggactt ggacgaattg gaggtcatca ttttggaagc      4800
     tgaagccgtc atgaatgaca ggccattgac gtacttatcg gaagatgcat ctgatttacg      4860
     tccgttaact ccctccatgt tcatgaagga tctacctgtt tccattcttc cagacgtgga      4920
     ctcagctgca aaggaattga atcgtcgttt ccgttattgt ctaaaactga aggacgacct      4980
     cataagacgt ttccgctcag agtatcttgg acaactcgtg agcaaagcta agtcgaagaa      5040
     agttgaccaa ctttcacctg gggatgtcgt tctcgtggag gtggacaaca agaagagatt      5100
     ggagtggccc attgcagtcg tcacccaagt tttcactgga gatgggaaga aaatcgccta      5160
     ctccgccaaa gtcaaaacaa gtcacgggga atttattcgc cctcttcaac gcttatttcc      5220
     gctggagcta catggagaaa gccttgccct tcccgaagaa agtgaagttg aaacgaagga      5280
     ggaagtggat tgcgacaagg atgaaattct gtcagaggag gaggactttc aagttccaga      5340
     atcggaagaa gctgaaccat tcatcgttac tcgtgcggga aggaaaattg tcaagccaga      5400
     caaattaaaa tattaatttt tttcatttat gttttcgttt ttaaaggttt aatccttcca      5460
     atagttaaga aaggattaaa agtgggagga aa                                    5492
//
ID   BEL-23_SiCu-LTR repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-633
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5020-5020 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 633 BP; 188 A; 117 C; 107 G; 221 T; 0 other;
     tgtcaggaaa tgtcacattg ccccataaaa ttctatgtat gtattttgtt cttttcccta        60
     tcttgttact ttcttttatg aatgcgtgta atttaggcgg tcaccacgcc gcaaaacggt       120
     caattttctc tttagtttgt gttgcctttg gttgttggta aaaggaagag aagacgagca       180
     gttcacgagc agcaagcaag gcactcagtt ttttagcact tttattcttg tccgatttct       240
     gtaaagtcag tagtcaattc ttacttttgt caagtcagat aaattacgat taatagtaac       300
     tattattgtt taaaatactg taaactctac ttattatcga tcagtaataa taaataatta       360
     aaaacttaat cattttcggc aattagccat cagcacatta ttgttaaagt gcatcgtaaa       420
     aaggggactt ttgagggaac agccgtattg ctctagtctt gcggaactca tcagtttatt       480
     atcatcaact catcatcgtt ttaaccgtgt catcagtcat aaatttgcgt atttcaaaag       540
     agtctatcca gcgatacgaa cctaacattt attattctga ttttatttaa aagtcagtgg       600
     cgaaccgttg cgaaagcaag tccatcccca aca                                    633
//
ID   BEL-23_SpEx-I repbase;    DNA;    INV; 5923 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5923
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6903-6903 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           668..5893
FT                 /product="BEL-23_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSEERDLIKKRGSFKGRLTAFVNFLDSLKDKTFTRCD
FT                 VSELQLRMGKIESLYEQYDEVQLRLECIADDIKLQVSERSDFESLYYKSLS
FT                 RAQNILTDFNKDNESMGSCKSTPGSMHKPVKLPTIQLPKFSGLYSNWLEFR
FT                 DTFTSLIHTNDDIDDINKFHYLRASLEGTAAIVIKSVEFSSSNYSVAWKLL
FT                 RDRFDNRRLLVQNHVSALFNIESLSKESSVALKSLIDQLNKDLRALESLGE
FT                 PVKQWDTLLIYIVTRKLDQRTYREWEECKGSLDKTSPIAFEVFMQFLRSRA
FT                 DLIETLELSRTNYSQAVIKTGPKIKSMVATQSPTSSISELTSKVCPKCNNT
FT                 DHTLNTCPQFLALTNDARRKLLPDYKICYNCFRSGHYANKCKKPGCKLCKR
FT                 RHNTLIHTDFKSTISGTLNDNNTSNNLSTSSSLPFASTETNNIALSAHIAS
FT                 SSGHKQRDVLLSTALVKVRDRNNYVHLVRAVLDSGSTSSFITNRLCRQLNL
FT                 QTSEVNRSILGINNLTSNVGKLSRFKIESLNDNFEFEIHCFVLPYITSNVP
FT                 CREINISNLNIPSNITLADPTFHKPADIDLLIGADLFWDLLGSQRLSLGTG
FT                 KPMLFETRLGWIVSGPITQNYYTASKSSNLKCNLSTFPHNDDCENLRNDLT
FT                 KFWQLEETNPNPLSSLMPEEKLCEEHFVKNTTRLSDGRFCVRIPLKNNPSV
FT                 LGNSLNKATHCLQSLERRFKVKPDFSKMYHDFMSEYESLGHMTKLNKDNLC
FT                 PGYFIPHHGVLRESSTTTKLRVVFNASSPDSSGVSFNDLQMVGPTVQDDLL
FT                 SILLRFRFHKYVLSADVEKMYRQVAVHQSDRHLQRVVWRDSVTEPVHVYQL
FT                 NTVTYGTASAPFLATRCLKQIGLECRDPKISEIIIHDFYVDDLLTGGRDLD
FT                 EVRFIRAEVTKALASACMPLRKWRSNDPQLVSDAVPQSFNLNIGSDEPDKL
FT                 LGLGWHVNSDDLGFPIGFTKSTNGYTKRDLLSVIARIFDPMGLLCPIVVTM
FT                 KVLLQKMWLDKLSWDQPLPSTICKQWDRITKQLPLINNLRIPRIVVCDSYR
FT                 WIEIHVFTDASESAYGACVYIRSVDDKGKYLVRLLMAKSRVAPIKPTTIPR
FT                 LELCGAVVGSRLYEKVKSSLRVEVSRVYCWTDSTIVLGWLQMMPSKLQPFV
FT                 RNRVAEVLDKAGNCTWRHVPTDKNPADLISRGVDISDLQALDLWWSGPDFL
FT                 QLDSSEWPSQLNYSQYETLPETRPNIVLSTTVADPKTEACFIDFSRFSNYS
FT                 RILRSVAYVLRFIKSCRKQYASTSYLCQDELQDALNIVIKQSQCESFPEYD
FT                 LLLNNKKLPKRSALLKLNVYLDDKNIIRVGGRLDNSSFNFNKKHPIVLQST
FT                 HTFTKLLFNFEHRRLLHAGPQLLLASIRESYWPIGGRNLARVCYHNCVLCR
FT                 RLKGQVVAPIMGNLPSERLRPGYPFESTGVDYAGPIMCASRQGRGCRLVKV
FT                 YIAIFICFTTKAIHLELVGDLSSNCYLLALHRFISRRGKPIDIFSDNGTSF
FT                 VGAYNDLSKFLKANSLSLGESAANEGIKFHFIPAYTPHFGGLWEAGVKSTK
FT                 YHLQRVLGNCNLTFEELYTALTKIEAVLNSRPLTPLSSDPADFTPLTPGHF
FT                 LVGRPLTALPQPDYGSNSMNHLSRFQRIEQLRQHFWSRWSKEYVAELQVRT
FT                 KWHSSRDTLRLNTLVVIKEDNLPPLKWRLGRVVAVHPGTDGIARVADVQTS
FT                 TGIIRRAFNRICPLPVSSDESC"
XX
SQ   Sequence 5923 BP; 1718 A; 1153 C; 1229 G; 1822 T; 1 other;
     tggtccttcg gagccggatc cattatataa agatctgaac cagcgaggat attggatata        60
     caatatatga acccagcgtg acatcgcatt tcttggatat tggactaaac tcaagcaacg       120
     gatagcggtg taaagcattt aatttaaata atatcgtcac cccaacactc aggtagtata       180
     agataaggat tgataaaagg ccagtatcgt tttttataat ttatctattg tattgtgcca       240
     tttgcagtca ttaattatca tcgagtaggt acctacccgc agtacattta acttgagtgt       300
     agatattatt gcaagtcact gttaaaatta gtaaagttat tagtatttaa aaggattatt       360
     atcagttgta catgtataaa atagtaatta atgcttaaat tttggctttt ctatagcaaa       420
     tcagtttttt attttacaac ctcaggattg taggtactta cacaacttaa aaataaatta       480
     cattatctta attaactatt ggaattttgg tttatatact agttttctta taatatctat       540
     ttgtattaat tgcaaaggtt gttaattast gtatataaaa cagttaggtg tatacgtaaa       600
     ttgtattgtt cataattgca agtagtactg tatcagtttc aggttgacta cactctcgtc       660
     tcccagtatg tccgaggaaa gggacctaat caaaaagcga ggaagcttca aaggccgttt       720
     gactgctttc gtcaacttcc tggactcact taaggacaaa acgttcacta gatgtgatgt       780
     ttctgaactg cagttacgca tgggcaagat cgagtcgttg tatgaacagt atgatgaggt       840
     acagttacgt ctggaatgca ttgccgacga tataaaatta caagtctctg agcgttctga       900
     tttcgagtct ctttattata aatccctgtc tagagcccaa aatatcttga cagactttaa       960
     taaggataat gaatcgatgg gaagctgtaa aagtacacct ggtagcatgc acaaaccagt      1020
     taaattgcct acaatccaat tacctaagtt tagcggatta tattctaatt ggttagaatt      1080
     tcgtgacacc tttaccagtc tcattcatac taatgatgac atcgacgaca ttaacaaatt      1140
     ccactacctg agagcatcac ttgaaggtac tgctgcgata gtaattaaat ctgttgagtt      1200
     ttcgtctagc aactactctg tggcatggaa gttgttacgg gatcgatttg acaacagaag      1260
     attgcttgta caaaatcatg tatctgcttt gtttaatatt gagtcgctct caaaggaatc      1320
     ttctgttgca ttaaagagtt taatcgatca gctgaataaa gatttacgag ctttagaatc      1380
     cttaggggag ccagtaaagc agtgggacac gctgctcatt tacattgtca ctcgtaagct      1440
     tgaccaaagg acgtatcgtg aatgggaaga gtgtaaaggt agtttagata aaaccagccc      1500
     gattgcattt gaagtgttta tgcaattctt acgaagtcga gccgatctaa tcgagacatt      1560
     agaactatct cgcactaatt attcccaagc ggtaattaaa acaggcccta aaattaagtc      1620
     tatggtagct acacagtctc ctactagttc tatctctgaa ttaacttcta aggtatgtcc      1680
     taaatgtaac aacactgatc acacgctgaa tacttgtcca cagtttctcg ctttaacaaa      1740
     tgatgctcga cgtaaattac tacccgatta taaaatttgt tacaattgtt ttcgctcggg      1800
     tcactacgct aacaaatgca aaaagccagg ttgtaaacta tgcaaacgta gacataatac      1860
     actgattcac acagatttta aaagcactat ttcgggtaca cttaatgata ataacacttc      1920
     taataacttg tctacctcgt cttcgttacc gtttgcttcc actgagacaa ataacatagc      1980
     gttatcggca catattgcat cctctagtgg tcataagcag cgagacgtgt tgttgtcaac      2040
     cgctctggtc aaggtgcgcg accgcaataa ttatgtgcat ctcgttcgcg cagtcctcga      2100
     cagcggcagc acatcgtcat tcataacgaa ccggttatgt agacaattaa acttacaaac      2160
     tagcgaagta aataggtcta tacttggcat taataatctc acgtcaaacg taggcaaact      2220
     aagtcgattt aaaatagaat ctttaaatga taattttgaa ttcgaaattc attgttttgt      2280
     gttgccatac attactagta atgttccgtg ccgtgaaata aatattagta acttgaatat      2340
     tccatcgaat ataacattag cagatcctac ttttcataag cccgctgata tagatctttt      2400
     aattggcgct gatctctttt gggatttact aggatcgcaa agattaagtt taggtaccgg      2460
     aaaaccgatg ttattcgaga ctcgtctagg atggatagtt tccggcccaa tcactcaaaa      2520
     ctattatact gcttcaaaat caagtaattt aaaatgtaat ttaagtacct ttcctcataa      2580
     cgatgactgt gaaaatctta gaaacgattt aacgaaattt tggcaactag aggaaacaaa      2640
     cccgaatcct ctcagttctt taatgccgga agagaagttg tgcgaggaac attttgtcaa      2700
     aaatacgaca cgattatctg atggtcgttt ttgtgttcgt atacctctta agaacaaccc      2760
     gtcggttcta ggtaattcct taaataaagc tacacactgt ttacagtcat tagagcgtag      2820
     attcaaggtt aagcctgatt ttagtaaaat gtatcatgat tttatgtcag aatatgagtc      2880
     gcttggtcat atgactaaat taaataaaga taatctgtgt cctggttatt ttatccctca      2940
     tcatggagta ttacgtgagt cgagtaccac gaccaaactt cgtgttgtct tcaatgctag      3000
     tagtcctgat tcatctgggg tgtcttttaa tgatcttcag atggttgggc cgacggtaca      3060
     ggatgaccta ttgtctatac ttcttcggtt cagattccac aagtatgttt tatccgcgga      3120
     tgtggagaag atgtatagac aggtcgccgt ccatcagtcg gatagacact tgcaacgcgt      3180
     tgtttggcgt gatagtgtta ctgagcctgt tcatgtttat cagttaaaca ccgtcacata      3240
     cggtacggct agtgcgccgt ttctagcgac acgatgcctt aaacaaatag gacttgagtg      3300
     cagggaccct aaaatatctg agatcattat acatgatttc tacgtggacg acttgttaac      3360
     cggtggcagg gacttagacg aagtaaggtt cattcgtgct gaagtcacca aggcacttgc      3420
     atctgcatgt atgcctctaa ggaagtggag gtcaaatgac cctcaattgg tgtctgatgc      3480
     tgtccctcag tcatttaact tgaacatcgg atctgatgaa cctgacaagt tgcttggtct      3540
     cggttggcat gtcaactctg atgatctcgg gtttcctatt ggtttcacta agtctacgaa      3600
     tgggtatact aaacgggact tattatctgt gatcgcgagg atttttgatc ccatgggttt      3660
     gttgtgtccc attgtagtca ccatgaaagt gttactacaa aaaatgtggt tagataagtt      3720
     atcttgggac caaccactac ccagcacaat atgtaaacaa tgggatagaa taacaaaaca      3780
     attgcctctt ataaataacc tacgaattcc tcgaattgta gtttgcgact cgtaccggtg      3840
     gatcgaaatc catgttttta ctgatgcctc tgagtctgcc tacggtgctt gcgtctacat      3900
     tcgcagtgtt gacgataagg gtaagtatct ggtcaggtta ttaatggcta agagtcgagt      3960
     tgctcccata aagcctacca cgattccgcg actggaattg tgtggtgctg tagtcggttc      4020
     tcgtctgtat gagaaagtga agagctcact ccgagtcgag gtcagtcggg tctattgttg      4080
     gactgattcg accatcgtgt tgggatggct acaaatgatg ccttccaaac ttcagccttt      4140
     tgtgcgcaat cgcgttgctg aagtgttgga taaggcgggc aactgtacct ggaggcatgt      4200
     cccaaccgat aaaaatccag cagacctaat atctcgtgga gtagatatta gtgatctgca      4260
     ggctttggat ctctggtggt ctggaccgga ctttttacaa ttagattcgt ctgagtggcc      4320
     ttcacagtta aattattcac agtatgagac gttaccagag actcgaccta acatagtttt      4380
     aagtactact gtggccgacc ctaaaactga agcatgtttt atagatttta gtcgattttc      4440
     taattattca cgaattttac gttctgtagc ttatgtacta aggtttatca agtcatgtag      4500
     gaaacaatat gcatcgacaa gttacttgtg tcaggatgag ttgcaagatg cactcaatat      4560
     tgtgatcaaa caaagtcagt gtgaatcatt tcctgaatat gatttacttt tgaataataa      4620
     gaaattacct aaacggagcg cccttcttaa attaaacgtt tatttagatg acaaaaatat      4680
     tattcgagta ggaggacgtc tcgataattc tagttttaat tttaataaaa agcaccctat      4740
     agtattacag tccactcata cttttaccaa attattattt aacttcgagc ataggaggct      4800
     gttgcatgct ggtccacagt tattactggc ttccattagg gaatcttact ggccaatagg      4860
     cggtcgcaac ttggcgagag tatgttatca taattgcgtt ctgtgtcgac gcttgaaagg      4920
     tcaagtcgtc gctcccataa tgggtaactt accatcagaa cgccttcgtc caggttatcc      4980
     ttttgaaagc accggtgttg attacgccgg gcctatcatg tgtgccagtc gtcaaggccg      5040
     tggatgcagg ctggtaaagg tgtatatcgc aatttttatt tgctttacaa ccaaagcgat      5100
     tcacttagag cttgttggtg atttatccag caactgttac ttactagctt tgcatcgatt      5160
     catttctaga agaggtaaac ccattgatat attttccgac aatggtacct catttgttgg      5220
     tgcgtacaac gacctatcta agtttttaaa ggctaatagc ttgtccttgg gtgaaagtgc      5280
     agcgaacgaa ggaatcaagt ttcattttat acccgcatac accccacatt tcggcggact      5340
     ttgggaggcg ggtgtgaagt caacgaaata ccatttgcaa cgagtgttgg gaaattgtaa      5400
     tttgacattt gaagaacttt acaccgcact cactaaaatt gaagcggttt tgaactctcg      5460
     tccattaacg ccattgtcat cagatcccgc agattttact ccactgacac cgggtcattt      5520
     tcttgttggg aggcccctga ctgccttacc gcaacctgac tacggaagta attccatgaa      5580
     ccatttgtct cgattccaaa gaatagagca attacgccag catttctgga gcagatggag      5640
     caaggagtac gtagccgaac tgcaggtgcg gaccaagtgg cactcctcca gagatacgtt      5700
     aagactgaac accttggtgg tgattaagga agacaatctt cctcctctga agtggagact      5760
     gggacgagtt gtggctgttc acccaggaac ggacggcatt gctcgagtag ctgatgtaca      5820
     gacgtctacg ggaatcattc ggagggcgtt caacaggatc tgcccactgc ccgtgtcttc      5880
     ggatgaatct tgttgaaacc aacgctttca aaacccgggg gaa                        5923
//
ID   BEL-23_SpEx-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-23_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-214
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6931-6931 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 214 BP; 51 A; 37 C; 41 G; 85 T; 0 other;
     tgtacgagcg cctgatagat gggccatagc aaatcggcaa caacgtgtgc ttgctttaat        60
     attagattaa gtagttgtat ttaatttgta tgtaccgacg acagttttat ttttcacttg       120
     ctgtgctgta ctctttgagt taacacctat aattaaattc tttcttgctg agtatttttt       180
     tgagtctttt cctgcgaagc cctggttatt taca                                   214
//
ID   BEL-240_AA-I repbase;    DNA;    INV; 6606 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-240_;
KW   BEL-240_AA-I; BEL-240_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6606
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6606
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 108-108 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..6604
FT                 /product="BEL-240_AA-I_1p"
FT                 /translation="MSESTKEPDKPRGVIRQLTEEESLTAGRCPLCDRPDV
FT                 ADKWMVQCDLCERWFHFSCAGVNESIADRSFACVTCGLKNARESTRSQTSS
FT                 TSSTRRRLELLRLDEEKKLEEQMLAEQAEEEAALRKKALEEEMERRKRIMK
FT                 EKLEIAKSYLSKKYVVLQEEERSNDGKSGKSQSSTRSKRSDVEKWVEKHGM
FT                 AMATGFGTNQVPNGSTSVTGTVPKTTTAGISSGEGGAILPTTSDVQNNPAA
FT                 TTSLYDHENIASWGTLVPHSGQNPAVPASIGSSSLPTTASTPVHQGQIPRT
FT                 VNFLAAVDISPPTSTQSARLPAHNMDISPPNVGERTTADLEREVHELQLQL
FT                 ANMKRASSSQYQPCSAPGGSGVSITATSGLGNPTDAGMSNFHAPDQDAHTV
FT                 GRQAQIQRSYPVGTQARVSFATHCTSQNTVSNSISIPHWNPMVSSNNLPST
FT                 RSGFSNRSWQQCESTDPNPFVASTSVPNPLLASGISVPNPINQQPFPIGAP
FT                 SYPFVASVPSVPNPVVTPVVSQVVHNPLAAMFGPSSQQIAARHVVPKELPE
FT                 FAGDPVDWPLFVSSYTNSTRMCGYSNDENLMRLQRCLKGNAKDAVRGHLYH
FT                 PSSVPQVMATLETLYGRPELIVKCLTNKVFATPAPRADKLESLISFGLVVQ
FT                 NLCSQLQAMGMEVHLSNPSLLQDLVDKLPANIKLDWAMYQRQIPVVDLRAF
FT                 GNYMATIVSAASNVTLYAEPLRNPEKPKGKEKGFVNAHLTETGRKPDREGK
FT                 KDEVGASATYKPKPCLMCKKDGHKARDCHSFKQLSLENRWKTAQQLKLCHR
FT                 CLIPHGKWPCKATVCGVGNCEVRHHKLLHPGDPSHATTTATASANSQSRPS
FT                 AIVNVHRQLPGPVLFKILPVTLYGKHTSTNTLAFLDDGSSHTLIEKDLADE
FT                 LGVEGEVEPLCLQWTSSIKRTESESQNVELEISAAGTDRKHTLAYVRTVES
FT                 LDLPPQSLQYEEMAHKFDYLKGLPVASYATAAPRILIGADNAKLLLTLKKR
FT                 ERKYCEPVAAKTRLGWTIYGKAGGIGASSEHRLLHVSARTSDEQLHDAVKD
FT                 FFSIENVGVALVPQVEAEEDRRSREILETTTVRTTSGRFQTGLLWKFDHVE
FT                 FPENRFMAEKRLTYLERGLSKKPELYANVRQQILDYQSKGYAHKLTDEEAS
FT                 SSDPRSVWYLPLGVVQNPNKPGKVRVVWDAAAKTSGVSLNSMLMKGPDLLT
FT                 SLPSVLFRFRQREVAITGDIKEMFHQIMIRPEDRQAQRFLWRDNPEDQMQE
FT                 FVMDVATFGSTCSPCSAQYVKNKNAEEWKQIYPEAAEAIVDNTYVDDYANS
FT                 SDTVEEVVRVALEVKEIHASAGFEIRNWLSSSEQVLRRVGEQSSESAKHFI
FT                 AEKSTDTERVLGMTWLPESDEFTFALKLRADVLQLLDEEITPTKRQVLRVV
FT                 MSIFDPLGLVATFVVHGKRLIQDIWRAGVGWDDPIPEQLASQWRRWVEVLR
FT                 HLNQVKIPRCYFPGYEPRSLDSLELHVFVDASEAAYACAAYFRIVDRGQVR
FT                 CALVSAKTKVAPLKPMSVPRLELQAAVIGVRLMKSVQENHTLPISRRMIWG
FT                 DSKTVQSWIRSDQRKYRQFVAYRVSEILSETTLDEWKWVPTRLNVADEATK
FT                 WGKGPSFQADSRWFVGPEFLYEEESKWPSQEFSPTDTPEEMRTVQAHHRVP
FT                 ESLIDFQRFSKFQRLLRTMGYVLRFVDRCRGRAKNDIHGDDVLSKEELLKA
FT                 EAMLWKLVQAETYPVEVSTIRRNQDLPPEQAKRLAKGSPLRKLSAFLDDHG
FT                 VLRVEGRIGAAKFVPYASKFPVILPKKHRFTELVVELFHQKYAHGYRETVT
FT                 NEIRQIFHIPNLRTMVRKIATRCLWCSVYRTVPKAPRMAPLPAARVTPYVR
FT                 PFTFIGIDYCGPFLIRIGRSNMKRWVVLITCLTIRAVHLEVASTLSSESCK
FT                 MALRRFIARRGAPQEIYSDHGTNFVGASRELREEVSAVNRDLAKTFTNRDT
FT                 QWRFNPPAAPHMGGAWERLVRTVKSSLETLSVTRTPDEETFQTLLVEVEGI
FT                 VNSRPLTFVPLDTEDDEALTPNHFLMLSSSGVVQPMQMAVGDNGRKLRTNW
FT                 DLVRNLLDEFWTKWIKGYLPMICRRTKWFDDVKPVEVGNLVVLVEESARNS
FT                 WTRGKVVKAIPGSDGRVRRVDVLTAKGVIQRPVTKVAVLDVTVGSTAEDDQ
FT                 QQYGSG"
XX
SQ   Sequence 6606 BP; 1766 A; 1640 C; 1790 G; 1410 T; 0 other;
     tactttaagg tttttaacct cacaaagtga gcacttccag acgccaggta tgtctgaatc        60
     gacaaaggag ccggacaaac cgcgcggtgt catccgacag ctgacggagg aggaaagctt       120
     aacagccggc cgttgtcccc tttgcgaccg cccagatgtg gcggataaat ggatggtgca       180
     atgcgatctg tgcgagagat ggttccactt ctcttgtgcg ggggtgaacg agagtatcgc       240
     cgatcgcagt tttgcgtgcg ttacttgcgg cctcaaaaac gcaagagaat ccacaagatc       300
     gcaaacctcc agtaccagct caacgaggag gcgacttgaa ctcctacgat tagatgagga       360
     gaagaaactg gaggagcaaa tgctggccga acaagcagaa gaagaagctg ctctacggaa       420
     gaaggccctg gaagaggaaa tggagcgacg gaaaaggatc atgaaggaaa agctggagat       480
     cgcgaagagc tacctcagca agaagtacgt ggtgctgcaa gaggaggaac ggtcaaacga       540
     tggtaagagc gggaaaagcc aatctagcac tcggagtaag cgcagcgacg ttgaaaagtg       600
     ggtcgagaaa cacggaatgg ccatggcaac tggattcggg acaaatcaag ttcccaacgg       660
     ttccacgtca gttaccggaa ctgtcccaaa aacaacaaca gctggaatct cgagtggtga       720
     gggtggtgca atacttccga cgacgtctga tgtccaaaat aaccctgcgg caaccactag       780
     cttgtatgat cacgagaata tcgcatcgtg gggaactctg gtgcctcatt ccggccagaa       840
     cccagcagtt ccagcctcga ttggatcttc atcgctgccg acaactgcta gcaccccggt       900
     gcatcaggga cagattccgc gtacagtcaa tttcctcgcg gcggttgaca tctctcctcc       960
     aacttcaacg cagtcagcca gactgccggc acacaacatg gatatttctc cacctaacgt      1020
     cggcgaaagg actacagcgg atctggaacg agaggttcac gagttgcagc tacagttagc      1080
     caacatgaag cgggcttcgt ctagccagta tcaaccatgt tcagcccccg gaggcagcgg      1140
     agtgtcaata acagcaactt ctggtctagg taaccccact gacgcaggta tgtccaactt      1200
     tcatgccccg gaccaagatg cccatacagt aggtagacag gcgcaaatcc agcgcagtta      1260
     tccagtaggg actcaggcta gagttagttt tgctacacat tgtacctcac agaacactgt      1320
     atcgaattcc atttccattc cacactggaa cccgatggtt tcgtcaaaca atttaccgtc      1380
     tacccgttct gggttttcca atcgctcatg gcagcagtgc gaatcaactg atccaaaccc      1440
     gttcgtcgcg agtacaagtg tgccaaatcc gcttttggca agtggtataa gtgttccgaa      1500
     tccaatcaat cagcagcctt ttccgattgg cgctccatcc tatccgttcg tcgcgagtgt      1560
     accgagtgtt ccgaacccag ttgtcacgcc ggtagtttcg caagtagtgc acaatccgct      1620
     agccgcgatg tttggaccga gttcccagca aatcgccgca aggcacgtcg tacccaagga      1680
     gttacctgag ttcgccggcg atcctgtaga ttggccgttg ttcgtaagca gctacaccaa      1740
     ctcaacgcga atgtgtgggt attccaacga cgagaatctg atgagacttc aacgctgtct      1800
     gaaggggaac gcaaaggatg cagttcgagg acatctctac catccatcgt cggtacccca      1860
     ggtaatggcc accttggaaa cactctacgg ccgcccggaa ctgattgtga agtgtctgac      1920
     gaacaaagtc tttgccactc cggcaccgag agcggataag ctggagagtc taatcagttt      1980
     tggactcgtc gtgcaaaacc tctgcagtca gcttcaggct atgggtatgg aagttcatct      2040
     gtcgaatccg tcacttctcc aagaccttgt ggacaagttg ccggccaaca tcaagctgga      2100
     ttgggcgatg tatcaacgac agattccagt tgtagatttg cgtgccttcg ggaattacat      2160
     ggcgacgatc gtttctgcag ccagtaatgt tacgctttat gcagaaccgc tgcgaaatcc      2220
     ggagaagccg aagggaaagg aaaagggctt cgtaaacgct catctgacgg agaccggccg      2280
     aaaacctgat cgcgaaggca agaaggatga agtcggcgcg agcgctacct acaaaccgaa      2340
     gccgtgtctg atgtgcaaga aggatggaca taaagcgaga gactgccata gttttaaaca      2400
     gttatcgtta gagaatcgtt ggaagaccgc tcagcagtta aaactgtgtc atcgctgctt      2460
     gattccccat ggcaaatggc cgtgcaaggc cacagtttgc ggcgtcggta actgcgaagt      2520
     gcgtcaccat aagctactcc acccaggaga cccaagtcac gcaactacaa cagctacagc      2580
     gtcagcgaat agtcagtcta gaccatcagc gatcgtgaac gtgcaccgtc agcttccggg      2640
     tccagttctt ttcaagattc ttcccgtaac tctttacgga aagcacacat caaccaacac      2700
     gttggcattc ctcgacgatg gatcatcgca tacgctgatt gaaaaggact tagcggacga      2760
     actaggagtt gaaggcgaag tggaacctct ctgtctgcag tggaccagca gcatcaagcg      2820
     aactgaaagc gagtcccaga acgttgagct ggaaatttcg gccgctggaa cggatcgtaa      2880
     gcatacactg gcttatgtac gaacggtcga aagtctggat cttcccccgc aatcattgca      2940
     atacgaagag atggcgcata agttcgacta cctgaaagga ctacccgtgg caagttacgc      3000
     tactgccgca ccgcgtatct tgatcggagc cgacaatgct aagctgttac tgacgctgaa      3060
     aaagcgagag aggaagtact gcgaaccagt tgcggcaaaa actaggctgg gctggaccat      3120
     atacggtaaa gcaggaggta ttggtgcctc atccgagcat cgcctgcttc atgtttctgc      3180
     tcgcacatcc gatgaacagc tgcacgacgc ggtgaaagac ttcttctcca tcgagaacgt      3240
     tggtgtggct ctagttccgc aagtggaagc tgaggaagat cgaaggtccc gtgaaatcct      3300
     tgaaaccaca actgttcgta caacctctgg acgatttcag acaggcttat tgtggaagtt      3360
     cgaccatgtt gagttccccg aaaaccggtt tatggcagag aaacgattaa cgtatttgga      3420
     gcgaggcttg tccaagaaac cggagctgta cgcgaacgtc agacagcaga tcctcgacta      3480
     tcaatccaaa ggatacgcac ataagctcac cgacgaagaa gctagcagca gtgatcccag      3540
     aagtgtctgg tacttgccac taggtgtggt gcagaatccg aacaagcccg ggaaagtacg      3600
     agttgtgtgg gacgcagcgg cgaagactag cggagtttct ttgaactcca tgctgatgaa      3660
     gggcccggac cttctcacat cgctaccatc tgtgttgttc cggtttcgtc agcgagaggt      3720
     tgccatcact ggtgacataa aagaaatgtt ccaccaaatc atgattcggc cggaagatcg      3780
     ccaagcacaa cgcttcttgt ggcgggataa tccagaggat cagatgcagg aattcgtgat      3840
     ggacgttgca acctttgggt cgacatgttc gccatgctcc gcacaatatg tgaagaacaa      3900
     gaacgctgaa gaatggaaac aaatataccc ggaagccgca gaagccatag tggacaacac      3960
     ctacgtagac gattacgcga atagttcgga tacagtggaa gaagtagttc gcgtagcgct      4020
     tgaagtaaag gagatacacg ctagtgccgg attcgagatc cgaaattggc tctcaagctc      4080
     tgaacaagtt cttcgacggg tcggggagca aagttcggaa tctgcgaaac acttcatcgc      4140
     ggagaagtcg accgatacgg aacgagtgct gggaatgacg tggctgccag aaagcgacga      4200
     atttacgttt gcactcaagc tgcgtgccga tgtactacaa ctgttggatg aggagatcac      4260
     tccaacaaaa cgccaggtcc tgagagtcgt catgagcatt ttcgaccccc tcgggctcgt      4320
     tgcgacgttc gtcgtacacg gcaagcgctt gattcaggac atttggagag ctggtgtggg      4380
     ctgggatgac ccaattccag aacagctagc cagtcaatgg agacgttggg tggaagtact      4440
     ccgtcatctc aaccaggtga agatccctcg ctgctacttc ccagggtacg agccacgcag      4500
     cctagacagc ttggaacttc atgtgttcgt cgatgcgagt gaggcagcgt atgcttgtgc      4560
     agcttatttc cggatagtcg accgcggaca agtgcgttgt gcacttgtgt ccgccaaaac      4620
     aaaagtagct ccgctgaaac caatgtcggt tcctcggcta gagttgcaag ctgcggttat      4680
     cggcgtgcga ctaatgaaat cggtacagga aaaccatact ctaccgatca gccgtcgtat      4740
     gatttggggc gactcgaaaa cagtacaatc ctggattcgg tcagaccaac ggaagtaccg      4800
     gcagttcgtg gcgtacaggg tcagcgaaat cctcagcgaa accactttgg atgagtggaa      4860
     atgggttcca acacgactga atgtagcgga tgaagccacg aagtggggca agggacctag      4920
     cttccaagcc gacagccgtt ggtttgttgg gcctgaattc ctctacgagg aagaatccaa      4980
     gtggccgagc caggagttct caccaacgga cactccggaa gaaatgcgta cggttcaagc      5040
     tcatcataga gttccagagt ctctcatcga ttttcaacga ttttctaaat ttcaacggct      5100
     gctgagaaca atgggttacg tcctacggtt cgtcgatcgt tgtcgaggaa gagcaaagaa      5160
     cgatatccat ggtgacgatg tgctctcaaa ggaggaactt ctgaaagcgg aagccatgct      5220
     gtggaaatta gtacaagccg aaacgtatcc cgtggaagtg tcgacgatac gtcgaaacca      5280
     ggatcttcca ccagaacaag ccaagcggtt ggcaaagggt agtcctctac ggaaactttc      5340
     agcgtttctt gatgatcacg gtgtcctgcg tgtcgaagga cggattggag cagctaaatt      5400
     cgttccctat gcatccaagt ttcctgtcat actcccaaaa aagcatcgct tcaccgaatt      5460
     ggtcgtcgag ctctttcatc agaagtacgc gcacgggtac agggaaactg taaccaacga      5520
     gattcgacaa attttccaca tacctaactt gaggaccatg gtccgaaaga tagctacgcg      5580
     atgtttatgg tgttccgtat atcgcactgt tccaaaagca ccacgaatgg ctccccttcc      5640
     agcagctaga gtgaccccgt atgtccgtcc gttcaccttc atcggtatcg actactgtgg      5700
     gccttttctg atccgcatcg gaaggagtaa catgaaacga tgggtcgtac tcataacctg      5760
     tttaacgata cgggccgtac acctggaggt ggccagcacc ttgtccagtg aatcgtgtaa      5820
     gatggctctg aggcggttta tagccagacg aggcgccccg caggagatat atagcgacca      5880
     cggcacgaac ttcgtgggag cgagtcgaga actaagagag gaagtatcgg cggtaaaccg      5940
     cgacttggct aaaaccttta ccaatcgtga cacccaatgg cgtttcaacc ctcccgctgc      6000
     tccacacatg ggtggtgcct gggaacgcct ggtgaggacg gtgaagtctt cgttagaaac      6060
     gctatcggtc accagaacac cggatgaaga aaccttccag acgctgctag tcgaagtcga      6120
     aggaatcgtc aactccaggc ctttgacatt tgtgcctcta gatacggaag atgatgaagc      6180
     gctcacgccc aaccacttcc tcatgctgag ctcaagcggt gtggttcagc cgatgcagat      6240
     ggcagtaggt gataacggac ggaagcttag aaccaactgg gatctagtgc ggaatctact      6300
     ggacgagttc tggacaaagt ggatcaaggg gtatctgccg atgatctgcc gtcgtacgaa      6360
     gtggttcgac gacgtcaagc cagttgaagt tggtaacctg gtggtcctag ttgaagaaag      6420
     tgctcgaaac agctggacac gcggaaaagt agtgaaggcg atccctggca gcgacggcag      6480
     agtacggagg gtagatgtat tgacggctaa aggagttatt cagcgaccag taactaaagt      6540
     ggcggtgctc gatgtgactg ttgggagtac ggctgaggat gaccagcagc aatacgggtc      6600
     ggggaa                                                                 6606
//
ID   BEL-240_AA-LTR repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-240_AA_;
KW   BEL-240_AA-I; BEL-240_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-498
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 935-935 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 498 BP; 198 A; 95 C; 80 G; 125 T; 0 other;
     tgtgcgggag taagcccacc gtgcgcacca ccactgctac gattgaccaa gaggaccttg        60
     cataccgttt acttcacgac cgagtagctg tcaacgatcg gtaaaaaacc gaacaaaaac       120
     aaattgcaaa cggaacagtt aaaacatgcg tttctaattc taaatttgtt attctaagac       180
     acgaattaca ttaaattgtt aaaattgtat tttttggatt attctatgaa tttgtaagta       240
     catactacaa cacaacatgc agaaaatgga atgaattaac atttatacaa catatagaca       300
     gattaaaacc aacataaacg ttacggacag tgacagacag attaaaagga aggactaaaa       360
     acgtaagtca cattaaaacc taaaaattga aattgtaaaa ctaatttaaa taaaatttac       420
     agcttaaagc attctcctat aaaaagcgag tgctaaaaag gcgtccgaaa cattcctgct       480
     gtcgcagcca ccgtaaca                                                     498
//
ID   BEL-241_AA-I repbase;    DNA;    INV; 6402 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-241_AA_;
KW   BEL-241_AA-LTR; BEL-241_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6402
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 936-936 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5449-5847] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           985..2589
FT                 /product="BEL-241_AA-I_1p"
FT                 /translation="MSEVVLPQKEHRQPAILTVSQTQSDFASFNTRQIKQP
FT                 NSSLFNAASNTPTFIPHTNSIVTEPCLPPHSSEYTTVFDPIHMSSPRVRFS
FT                 SPPSVPYVYNNLSPIVPPIISSYSTVHTVQSNPSPMVSSIISTCTPTSAIS
FT                 STVTTPASVSMSHAWISVPNAQQLAARHVVPKDLPIFSGDPVEWPLFLSYF
FT                 QNSTEMCGFSNGENLIRLQRSLKGNALEAVRSFLLHPSSVPSIIGTLRTLY
FT                 GRPDLIVNSLLEKVRNTPAPKPDKLESLISFGLACQNLCGHLRAAGQETHF
FT                 SNPSLLHELVNKLPANIKLDWAIFKQKCPEVNLCTFGDYMSQIVLAVSDVT
FT                 PFQEPEGFPNDKRKKQKLYVNAHSFGTSSNTEEARGSIDKQVFLKPCLVCK
FT                 KQGHNVRECETFADSSLEDRWKYAQELHLCRRCLNAHGRYPCKTAIVCGFN
FT                 GCQERHHKLLHPRKPQSELSSQSSNSTGIVNVHHKPLVTVLFRIIPVTLFG
FT                 NGKSIETFAFLDEGSSTTMVETRIAQELGIQGEVQPLSL"
XX
SQ   Sequence 6402 BP; 1821 A; 1513 C; 1510 G; 1544 T; 14 other;
     aaacttcaag attttatccg tgatcggaaa attgattcgc aacaaccaaa agtgaacatc        60
     atggcgacag cggtagcccc aggcacgtgc ttctgtggac aattgataga tcccaaggac       120
     aaaatggcgc gctgccaaaa gtgctcacgt catgtgcatt tagcatgcgc agtggaggat       180
     ctcaccatca atggaagttg cctcgtttgt ttacgctgtg ttgaagacgt accaccgccg       240
     ccccgatcgc tctcaagaaa atcatcgagc tctacagccc gtgctagaat tttattagac       300
     attcgtcgtc tggaagagga aaagatcatg caggaaaaag cggcagaaga taaagcacgg       360
     cgagatcagg attttttgtc aaaaaagtac gatcttctac atgctcaatt ggacgaagaa       420
     gaagatggaa gtgtaagaag tcgtcgaacg gtttcaagca ggcagamagt agaaaattgg       480
     ctccggcgtg aaccaatggt aaccgctgtt tcggaaatca ggtgtgagtc agatcccgtt       540
     ggtgaatcca ctaggactgg aaccactcca aagcagggtc accaaacacc atcaaaaaac       600
     cctgcaacat cctccttcca agctaatact caatcctgct ttaccgttgg gatccaatcg       660
     tctgttggaa gtatggcaaa gtggagagca tctttagacg gtggcgwaca acagccagat       720
     acatcggata accaaacgca aaaccctctc gattggacct tcgatcgaga agctcgtcgg       780
     gattctcaac cacccccgtc tagtcggctg gcagtcgact tgcaggagat tcagcaaaag       840
     ttcgactcaa tgaaactgtg gcccactgat caatcacctc cagtcgawcc agggcaaggt       900
     cagcgacaac cgttaggtgc ttcagccgct gtgtcggaga gcatacagat tgcaactcta       960
     ccggccatca aaagtggtcc acggatgtcg gaagtcgtgt taccacaaaa agagcatcgt      1020
     caaccagcta ttttaacggt gagtcaaaca caatctgatt ttgcgtcctt caacacgcgt      1080
     caaataaagc aaccaaattc gtcgctgttt aatgcggctt ctaatacccc aacgttcata      1140
     ccgcacacaa actccattgt aaccgaacca tgcttacccc cccattcttc tgaatacaca      1200
     acggtcttcg atcccataca catgagttct cctcgggttc gtttttcgtc acccccctcc      1260
     gtgccgtatg tctacaacaa cctgtctcca atcgttccac caatcatctc gtcgtactca      1320
     actgtgcata cagtacaaag caatccatcg cctatggtgt cctccatcat ctcaacttgt      1380
     acaccaacat cggcgatctc gtccaccgta accaccccag cgtcagtctc gatgtcacat      1440
     gcgtggatta gcgtaccgaa tgcacaacag ctagctgcca gacacgtcgt tcccaaggac      1500
     cttcccatct tttcgggcga cccagttgag tggccgttgt ttttgagcta tttccagaac      1560
     tccaccgaaa tgtgcgggtt ttcaaatgga gaaaatttga ttcgacttca aagaagcctc      1620
     aaagggaacg cgcttgaagc agtacgaagt tttctgctac atccatcctc ggtgccaagc      1680
     ataatcggaa cgctgaggac actgtatggc cgaccagacc taattgttaa ctcgctccta      1740
     gagaaggtgc gtaatacacc agctccgaaa cctgataaat tggagtcgct gatttccttc      1800
     ggcctcgcct gccaaaacct atgtggacat ctgcgcgctg caggtcagga aacccatttc      1860
     tccaacccct ctttgttgca cgaactcgtt aacaaattgc ckgccaacat taaattggac      1920
     tgggcaatct tcaaacaaaa atgcccagaa gttaatcttt gtactttcgg tgactacatg      1980
     tcacagatag tgctagccgt kagtgatgtt accccatttc aagaaccaga aggcttcccc      2040
     aatgacaagc gcaagaaaca aaagttgtat gttaatgccc attcatttgg tacctcatcg      2100
     aacacagaag aggcccgtgg ctcaattgat aaacaagtgt ttctaaaacc ttgtttggtg      2160
     tgtaaaaaac agggtcataa tgttcgagaa tgtgaaacct ttgctgacag ttcattggaa      2220
     gatcgctgga agtatgcaca agagctccat ctgtgtagaa ggtgtttgaa tgcacatggg      2280
     cggtatcctt gcaaaaccgc aatagtttgt gggtttaacg gatgccaaga acgacatcac      2340
     aaattacttc atccgaggaa accgcagtca gagttatcat ctcagtcttc aaacagcacc      2400
     ggaattgtca atgtacatca caagcctttg gtaacagtcc tcttccgtat cataccggta      2460
     acattgttcg gtaacgggaa atccatcgaa acctttgcat ttcttgatga aggttcttcg      2520
     acaacaatgg tagaaacaag aatcgctcag gaactaggaa ttcaaggtga agtgcagccg      2580
     cttagtctac astggaccag cgacgtcgaa cgwacagagg aaggttcgca ggtagttagt      2640
     ttggaaatct gtggacgagg aacccacaag cgtcacgtat tgaaaggagc tcatacggta      2700
     cagaagcttg gactacctac ccaaagctta caactcgacc tactcattga gaaattttct      2760
     tacttacgtg gacttcccat ccaggactac caaaatgcaa caccatcggt tctgatcgga      2820
     ttggataaca cccatttgaa aatacctctc caaatccgcg agggaaaaag tggtcaaccc      2880
     gctgctacca aaaccaggct tggttgggca gtttatggag gaattctggg agcaacttca      2940
     tcaatcaacc aataccagtt tcacatgcag gcagaaccta ggaaggcgga tgaagactta      3000
     cacaatctag tgaaagagtt cttctcgatt gaaaattttg gcgttgcagc ggcccctgct      3060
     ctagaaggat cagaagtcaa acgagcaaat aaaattttgg aagacacaac ggtgcgatta      3120
     ccctcagggc agttccaaac cggccttttg tggaaatatg accacataca ctttccagat      3180
     agcaggccta tggcagagcg taggttgaaa tgtttagagc gtcgtttgat gcggwcccca      3240
     cagctgtacg aaaacgtaaa gcagcaaata gctgagtacg aggtcaaggg atatgctcat      3300
     aagatcaccc aagatgagct tgctagctca gatcctcgaa gaatatggta tcttcctttg      3360
     ggggtcgttg tgcatccaaa aaagcctggt aaaatccgtg ttgtatggga tgcagcagct      3420
     acggtgcaag gacaatcact taactccgtt ttgctgccag ggccagatct attgacatcc      3480
     cttccagcag ttctctccca atatcgccag aggcaggtgg caatcagcgg tgatattcag      3540
     cagatgttcc accagctcaa aatacgtcca gaagataaac aggcgcaacg atttttgttt      3600
     agagatgacc cgtcgaaggc tgttgtcaca tacgtcttgg acgttgcgac tttcggtgcg      3660
     acctgctcgc catctgctgc acagtttata aaaaamcgca atgcgagaga tttcgaggac      3720
     cagtatcctg aggcagcaca tgccattatc cacaaacatt atgtggatga ctatctcgat      3780
     agtctggata cgatagacga agcagtagat ctggcgcaac aggtaagaac tgttcatgct      3840
     aaggctggct tccatatccg caattggcag tccagctcca aagaggttct tgcacggatc      3900
     ggcgaatcag cagcggaagt accaaaatgc ttcaaagctc ataactctct gggtacagag      3960
     cgggttctgg gaataagttg gttgccgaat actgacgaat ttgtcttcag tggacttttc      4020
     cgagaggatt tcaagccgtt attacacggt gatgtcgctc ctaccaaaag gcagttgctc      4080
     caggtggtca tgtctatatt tgatcccctt ggacttgtct ctctcattgt ggttcatggc      4140
     aagatattac tacaaaatgt ttggcgttca aaaatcgact gggacacaaa aattgatgga      4200
     aacttgtttg gcgaatggta taggtgggcg attcttttga agcaactaaa cacggtgcac      4260
     atttcgagat gctacttccc tggatacgct cctgaaagct acgacactct ggaacttcac      4320
     gttttcaccg acgccagcga ggaagcatac gcagctgttg cctatttccg tatcatcgat      4380
     aggggtcaag ttcgatgtac cctagtaggg gccaaaacaa aagtggcacc actgaagcca      4440
     ctgtctatcc ccagacttga actacaagct gctttacttg gtgccagact agcaaaatcg      4500
     atagaagaga accacacact gaatatcaac cgacgtgtct tttggagtga ttcatctacc      4560
     gttctatcat ggctacaatc cgatcaacga aaatatcgac catttgttgc gtttcgtgtg      4620
     gctgagatta tagattcaac taaactaacg gaatggcggt gggttccttc acggtcgaat      4680
     gtkgctgacg acgctaccaa atggaagggc aatttacgac ttgataacga tcaccgctgg      4740
     tttcaaggac cggagttctt acgactagac ccgacaatgt ggccggaaaa tcatgtgtgt      4800
     agtaaggaaa caagtgaaga attgcggtct acaaatgtcc acgtggtgtg cccctccgag      4860
     cagttsatac ccttcggcag attttctaaa tgggaacgat gcttacgagc tgttgcttac      4920
     gttcatcgtt tcatccgtca acttcagcga agaatacgat gtgaagcttt ggaaaactcg      4980
     aaatggttaa ctcgagaaga gcttcaacaa gccgaagcaa ctatatggag attagcacag      5040
     agcgatgtgt tcacgaaaga gatcacgtta ttacaaaaga acaaccaagt tccgcagggc      5100
     caacagcagc aattggataa gagaagcaaa ctttataagt tatcaccatt cttggacggc      5160
     aatggtgtta ttcgattgga gagtcgaatt ccagcattca gcgacgcacc atacgacttt      5220
     aaatgtcctg tactattacc aaaaggacac tacgctacca agcttatggt tgactggtat      5280
     caccggcagt atatgcattg caatggcgaa acagcagtga atgagatgcg gcaaaaatac      5340
     catttgtcag aaatgagggt agctttcaaa aakttgcgga aggattgttt gtggtgcaaa      5400
     gtatacaagg cgtcacctag cactcccaga atggctccgc ttcctgaagt cagagtcaca      5460
     cccaatgtaa gggcgtttag cttcgtcgga ctcgattatt ttggcccgct tttggtaaag      5520
     caaggtcgac atgaagtgaa aaggtgggtg gcacttttca cgtgtttaac cgtgcgtgca      5580
     atccatttgg aagtggtaac tagcctatca acggagagct gtaaaatggc gattcggcgt      5640
     tttatagcac ggaggggggc accgcgagaa atctacagcg accgtgggac caactttata      5700
     ggtgttagcg gtgagttgcg agagaaaagt cgaaatatca accaaaaatt ggcagcaact      5760
     atcacgaata tcaataccga gtggcgcttc aatcctcctt cggcgcctca catggggggg      5820
     gtcttgggag cgcatggttc ggtcggttaa gtgtgcgctt gcatcgctct cttctgagcg      5880
     taaaccagat gaagaaacct tggaggcctt gttgatcgaa gcagaggcga ttgttaactc      5940
     taggccattg acttatatgc cccttgatca cgctgagaac gaggccttaa ctcctaactg      6000
     cttcttaatg ttaagcacga gtggagtaaa tcagccacaa agtgatctgg tcgatgaagc      6060
     atctacactw aaatctagct ggaacttgta ccaacgttta ttggaccgat tttggacccg      6120
     ttggatcaaa gaatatttac caacaatcac caaacggact aaatggtttg tggacacgaa      6180
     gccaattgaa gctggcgacc tggtgatcgt tgtagaagaa caccttagga atggttggag      6240
     aagaggccga gtcctacgcg tgtttcctgg gcgagacggt agaagccgca gcgcggatgt      6300
     tcagacgaca gctggagtgt ttcgacgacc agtgacaaag ttggccgtcc tggaagtagc      6360
     aggtattgct gcwgagaaca ccaagcaata cgggccgggg ga                         6402
//
ID   BEL-242_AA-I repbase;    DNA;    INV; 6405 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-242_AA_;
KW   BEL-242_AA-LTR; BEL-242_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6405
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5466-6023] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           668..2167
FT                 /product="BEL-242_AA-I_3p"
FT                 /translation="MQHLSSIEERNEGNVSQEVQNPLDWSLTWDLPETSQP
FT                 LPKGQLAVDLQEIQRRFTDVQLHRKPNHPPGCSFTTIEAMRKNNEQNTEIP
FT                 ATMSAHGRSFTQAALEPTIDQPVQLSGLEASHPRQQMSAASFSVSQSCSNY
FT                 TSTQIRPLQSNVTFSLPNRTSFIQHTHYPVTEPCNPPHSFQNVAAFNPLHK
FT                 STPHVRPATTPSVRFADYPLVSSSNLPSVPQVHTVQSTPLPIASAVAAPSG
FT                 MPSAIPPFDSTLAPASVPQPWISAPTAQQLAARHIVPKELPNFSGDPVEWP
FT                 LFISCFQNTTQLCGFSHGENLMRLQRSLEGNALEAVRSFLLEPSSVPMIIS
FT                 TLQTLYGRPDLVINSLLQKVRITPAPKPEKLESLVSFGLACQNLCGHLRAV
FT                 GQRAHFSNPALLQELVNKLPANIKLDWALFKQKCPVVDLGTFGDYMAQLVV
FT                 AASDVAPFQPSDAAIASSEKRKGKEKLYVNTHSTGNPEDSAGKRYQSGSTG
FT                 TKQF"
FT   CDS           5181..6302
FT                 /product="BEL-242_AA-I_4p"
FT                 /translation="MEGRIDGFCEAAYEFKYPAVLPKNHYATTLIVDSYHR
FT                 RFNHCNGETAVNEMRQRFHLSEMRAAFRKVRKLCMWCRVFRATPAVPRMAP
FT                 LPDARVTPRVKPFSFVGIDYFGPLLVVQGRHEVKKWVALFTCLTIRAIHLE
FT                 IASSLSTECCKMAIRRFISRRGAPSEIYSDRGTNFVGVSGELREQLRSINT
FT                 ELATTFTNTVTQWRFNPPAAPHMGGSWERMVRSVKCAFASLSVEREPSEEV
FT                 LVTLLVEAESVVNSRPLTYMPIESAEHEALTPNCFIMLSTSGVNQPPTQLV
FT                 DDKLVLRSSWFLYQRLLDQFWTRWVKEYLPTITKRTKWFVDTKPVSAGDLV
FT                 IIVEDRLETAGFEGSYYVYSRDEMAGAAVQT"
FT   CDS           4276..5268
FT                 /product="BEL-242_AA-I_2p"
FT                 /translation="MLFPRISSRKLRNSAATRTCGCQRGGVRGGSLFSDSG
FT                 PDSSSLCLSFLENQGGSTKPLSVPRLELQAALLGARLAKSVTENHTLCIKQ
FT                 RFFWSDSTTVLSWLQSDQRKYRQFVACRVSEILDSTKVDEWQYVPTRMNVA
FT                 DDATKWKEGLQIDTGHRWFSGPRFLYDPPSMWPQQKKLSCPTAEELRPVHV
FT                 HKEVINEALVQFNRFSKWERCLRAVAYVHRFIDQLKRKKHGDVPEVQLLLT
FT                 REELQRAEHTIIRLAQMEAFADEIATMQGNQSCHQINVIGWKKLVGSTSYR
FT                 LFWIIKESFAWRVESTGSVKLHTSSNILPCCRRTTMRLR"
XX
SQ   Sequence 6405 BP; 1677 A; 1620 C; 1626 G; 1480 T; 2 other;
     aaacttttag atttttatcc caccatcgcc aaattcgacg ccaacaaagt acaatggcgg        60
     ccagacacaa ttgtacatgt gatcaaccga tcgtcgatgg tgataagata gaccattgta       120
     gcgaatgttt tcgctctatt cattccgcgt gtgctgtgat cggtcgttgt atcggtggtg       180
     agcgtgtgtt gtgtgttctt tgccagcgtc gggctccacc accgcctcga tcgcattcga       240
     gaagatcgac gagctcttcc gttcgagcca gaattcaact ggatctacaa cgactcgaag       300
     aagaaaatcg attgcaggag agagcagcag aggaaaggct ccggcgtgag agggaatatt       360
     tagccaaaaa atatgacctt atgcacgccg agttgctcga ggaaggcgaa gcaagcagcc       420
     gtcgttcaat gtcaagcatc gaaaaggttc agcagtggct gcaggataag cctaccacga       480
     ctaccgggtc cggcatcggg tgtaatgaaa tccccgccgg tgtatcgtca cggacaggaa       540
     caatccgcaa gcccagccca tcagtgccaa caaccattgc tgcagcttca acaccgaagt       600
     cagggcagcc cgccgagctt acttttgggc tcaatccgag ccaaccaatt tgcccagatg       660
     cacgaggatg cagcatttga gttcgattga ggagcgcaac gaaggtaacg tatcacagga       720
     agttcaaaat ccgttggatt ggagccttac ttgggatctt cccgagacat cgcaacctct       780
     accaaaagga cagcttgcgg tggatctaca ggagattcag cggaggttta ctgatgtaca       840
     actacatcga aagccaaatc atcccccggg gtgttcgttt acaacgattg aagcaatgcg       900
     aaaaaataac gaacaaaaca ccgagattcc cgcaacaatg tcagcccatg gccgaagctt       960
     cacccaggct gcactggagc ccaccattga ccagccggtt cagttgtccg gcctcgaagc      1020
     atcacatccc aggcagcaga tgtcagcagc tagtttttcg gtgagtcaat cgtgttcgaa      1080
     ttatacttct acacaaataa gaccgttaca aagcaatgtg acattcagtc taccaaatcg      1140
     tacgtcattc attcaacaca ctcattaccc tgtgaccgaa ccatgcaatc ccccccattc      1200
     ttttcaaaat gtggctgcct tcaatccgct gcataaaagc actcctcatg tccgccccgc      1260
     aacaaccccc tccgtgcgtt ttgctgacta tccgcttgtt tcatcatcca atttgccatc      1320
     ggtgccccaa gtacacacgg ttcaaagtac tccattgcca atagcgtcag cagttgctgc      1380
     acccagtggt atgccatccg cgattccccc ctttgactca acccttgcac cagcatcagt      1440
     acctcaaccg tggattagtg ctccgacagc tcaacaactc gccgccaggc acatcgttcc      1500
     caaagagctt cccaactttt cgggcgatcc tgtcgagtgg ccgctgttca taagctgctt      1560
     ccagaacaca acccaactat gtggattctc acacggcgag aacttgatgc gtctgcaacg      1620
     aagtctcgaa ggtaacgccc ttgaagcagt gagaagcttt ctgctggaac catcgtcggt      1680
     tccgatgatt atctcgactc tccaaacact ctatggacgt cctgacttgg tcatcaactc      1740
     tcttctgcaa aaagtgcgta tcactccggc cccaaaaccg gaaaagctgg aatcattggt      1800
     atctttcggt ctcgcatgcc agaatctttg tggacaccta cgggcagtcg gtcagcgggc      1860
     ccatttctcc aacccagcgc tgctgcagga gttggttaac aagttgccgg cgaatattaa      1920
     gttggattgg gctctcttta agcagaaatg tccagtcgtc gaccttggga ctttcggaga      1980
     ctacatggct cagttagttg tcgccgcaag tgacgtggcg cctttccaac catctgatgc      2040
     tgctatcgct agttcggaga agaggaaggg aaaagagaag ctgtatgtga atacacattc      2100
     caccggtaac ccggaggaca gcgcaggaaa aaggtaccaa tccggcagca ccggaaccaa      2160
     acagttctts ggaaaaccgt gcccagtttg tggaaaacta gggcacaaag ttagagaatg      2220
     cgacgatttc aagaactgca atttggaaga ccgttggaag cgtgtgcagg aacaccacct      2280
     gtgcagacgg tgcttgatag cacatgggaa gtttccttgc aaagcgacgt cgtgtgggtc      2340
     ggaaggatgt gaagaacgac accacaagct gttgcatcca ggcaaaccgc aatcggctgc      2400
     tccagctagg aatccgccag cgatcgaaac aatcaacgtc atagcacacg caaagtagcc      2460
     acgctcttcc gtatcgttcc gtaacgcttt tggcaatcga aaattcgttc atacttttgc      2520
     gctttggacg atctaccctt gtcgacgcag gtgttgctcg gagctgggag tgcaggtgaa      2580
     gcatatccgc tttgccttca gtggaccggc gaaatcgaaa gggcagagga caactcacag      2640
     ctgattcata ttgaaatctc aggacgtggg tcgcagaaac gacatgtgct gaaagcagct      2700
     catactgtgg aaaaattgtg ccttcctaaa caaagtctgc cttttgaacg attgtctgaa      2760
     gaattcccgt atctccgtgg tttaccggtc gatgggtata gcaacgcagt tccaaccatt      2820
     ctgattggtc tagacaatac gcatttgaaa attcccctca aaattcggga aggtagaatt      2880
     ggccagccgg ctgcagcgaa aaccagatta ggttggacag tctacggtcc gatatccaat      2940
     gcgaattccc cgttggaaca ttgccacttt catctgagcg aagaagctcg gagttctgat      3000
     gaagttttgc acgatctggt gaaggatttt ttctcaatag agagtgtcgg cgtggctgtt      3060
     gctccattgc tcgaaggctc cgatgaaatg cgttctagga aaattttgga agatactaca      3120
     atccgtctgc catccggacg gttccaaaca gggctactgt ggaagcacga tcacataaat      3180
     tttccggata gcaggcccat ggcggagaac cggatgaaac ccttggagcg tcgtttatta      3240
     cggaaccctg agcttttcga caacttaaaa catcagattg tggaatacgt gaagaaggga      3300
     tatgcgcata aaattaccac cgaagaaatg ctcaacacag acccaaggag agtctggtat      3360
     ctccctttgg gggtagtcgt gaaccctaag aagcctggga aagttcgcat cgtatgggat      3420
     gcagcggcga aagttaaagg acagtcactt aactccgctc tgcttgctgg accagatctt      3480
     ctaacgtctc ttccatcggt tctatcccgt tatcgccaac gtcaagttgc aataagtggc      3540
     gatatacggg agatgttcca ccagttccaa atcagaccgg aggacagaca ggctcaacga      3600
     ttcttgttta gaagcgactt atccaaggcg ccagacacct acgtcatgaa tgttgcacct      3660
     tcggcgcgac ctgctcaccc tctgcggcac agttcataaa gaaccgaaat gcgaaggact      3720
     tcgagactga ataccctgct gcagctaccg caatcgtcca caaacattat gtggacgatt      3780
     atttggatag tctggatacc gtcgaggaag ccgtggatat ggcactccag gtgaaagagg      3840
     ttcacgctaa ggctgggttc cacatacgga actggatgtc cagttctaaa gaagttctgt      3900
     cacgggtcgg ggactcggca gaagagcaag tgaaaagctt ctcagcacat gccacttcgt      3960
     catcagaacg cgttcttgga atgagctgtt tccggaaaca gacgagttcg cattcagcgg      4020
     tttgtttcga gatgagttga tgccattact ccaaggagac gtcataccga cgaaaagaca      4080
     gcttctgcag gtggtaatga gtatttttga tccgcttggc ctaatatcgc tcgtcgtggt      4140
     gcatggaaaa atcctcattc aaaacgtttg gcgagcaaac atcgcgtggg acgaaaaaat      4200
     caacagtgaa cagctcagtg aatggcgtcg ttggatcaag ctattgggcc aacttgatgc      4260
     cgttcgaata ccacgatgct atttcccaga atatcttcca gaaagcttcg gaactctgca      4320
     gctacacgta cttgtggatg ccagcgagga ggcgtacgtg gcggcagcct attttcggat      4380
     agtggaccgg actcaagttc gttgtgtctt agtttcctcg aaaaccaagg tggctccact      4440
     aaaccattgt cagttccccg tctcgaacta caagctgcat tgcttggagc aagattggcg      4500
     aagtcggtca cagaaaacca cacattgtgc atcaagcaac ggtttttctg gagtgattca      4560
     accactgtcc tttcctggtt gcaatccgat cagcgaaaat atcggcagtt tgtagcgtgc      4620
     cgtgtatcgg aaatcctaga ttccacaaag gttgacgaat ggcaatacgt tcccacacga      4680
     atgaatgtgg ccgatgacgc cacaaagtgg aaagaagggc tccaaatcga caccggtcat      4740
     cgctggttca gtggaccgag attcttgtat gatcccccaa gtatgtggcc gcaacagaag      4800
     aaactttctt gccctactgc ggaggagctt cgacccgtac acgtccataa ggaagtcatc      4860
     aacgaggcgt tggtacaatt taaccgcttc tccaaatggg aacgatgtct acgtgctgta      4920
     gcttatgtcc atcggttcat cgatcaacta aagcggaaga agcatggaga tgtaccggag      4980
     gttcagcttc tgctcacccg tgaggaacta cagcgagcag aacatacgat tatcaggctg      5040
     gcacagatgg aagccttcgc ggacgagatc gcaacgatgc aaggaaatca atcctgccac      5100
     cagatcaacg tcatcggctg gaaaaaacta gtaggctcta caagctatcg ccttttctgg      5160
     ataatcaagg aatcgttcgc atggagggtc gaatcgacgg gttctgtgaa gctgcatacg      5220
     agttcaaata tcctgccgtg ctgccgaaga accactatgc gactacgctg atcgtagatt      5280
     cgtaccatcg gcggttcaac cactgcaacg gagagacggc cgtgaatgaa atgcggcaaa      5340
     gatttcactt gtcggaaatg cgggcagctt tccggaaggt tcgcaagcta tgtatgtggt      5400
     gcagggtgtt cagggcaacg ccagcagttc cacgaatggc accactaccg gacgctcggg      5460
     tcactccacg cgttaaaccg ttcagcttcg tcggaataga ctacttcggc ccgcttttag      5520
     tcgtacaagg ccgtcatgag gtgaagaaat gggtcgcact cttcacatgt ttaaccatta      5580
     gagctatcca tctcgagatt gcgtccagcc tgtcaactga atgctgcaag atggctatac      5640
     ggcggtttat atcgcggagg ggggcacctt cggagatcta cagtgatcgg gggacgaatt      5700
     tcgtcggagt cagcggagaa ctgcgagagc agctgagatc catcaatacg gaactagcta      5760
     cgactttcac caacaccgtt acmcaatggc gcttcaatcc accagctgca ccgcatatgg      5820
     gggggtcttg ggaacgtatg gttcggtccg ttaagtgtgc atttgcttcg ctatcagttg      5880
     agcgcgaacc tagcgaggaa gtattggtca cgttgctcgt agaggcggaa tcggtggtga      5940
     attcgaggcc gttgacctac atgcctatcg agtctgcgga acacgaagct ctaactccga      6000
     attgcttcat catgctgagt acgagcgggg tgaatcaacc tccgacgcaa ctcgtagacg      6060
     ataagttggt cttgcgttcg agttggttct tatatcaacg tcttttggat cagttctgga      6120
     cacgctgggt gaaggaatac cttcccacca ttaccaaacg aaccaaatgg ttcgttgaca      6180
     caaagccggt ctctgccggc gatctagtga tcatcgttga agatcggctc gaaacggctg      6240
     gattcgaggg atcgtactac gtgtattccc gggacgagat ggcaggtgcc gcagtgcaaa      6300
     cgtgaagaca tcaaccggag ttctacgtcg cccggtgtca aaattggccg tcctggaagt      6360
     ggctgataca gctcgcgacg acacggagca atacgggtcg gggaa                      6405
//
ID   BEL-242_AA-LTR repbase;    DNA;    INV; 457 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-242_AA_;
KW   BEL-242_AA-I; BEL-242_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-457
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 457 BP; 169 A; 92 C; 76 G; 119 T; 1 other;
     tgttcaggac ggcgccgtat cctcctaatt atttccctag gggtgcgtgg taccaacagc        60
     agggagaaaa acattatagt gtacaacaca tctacaatac acacaatact acacgatcgc       120
     ttaggaacac acagtcagta ctgaaataga caccacagaa gacgcacacg gattagaaga       180
     acagaaawct aaattgtcag tgaatttatt gtacagcaaa gttagttgga caggattcga       240
     acataaaacg gactaaaaat gtaagttgct gtttaaaatt ttgcataata tctaatattt       300
     tgtaaaccta tgaactactc atgccttaaa actactatga actatttttg agcttatagt       360
     taatgaacct aataaaattg cagctaaaag caaactccac atcataaaaa acgagtttcg       420
     ctctttggat ctccgaaaat catcacctgt cgcaaca                                457
//
ID   BEL-243_AA-I repbase;    DNA;    INV; 6636 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-243_AA_;
KW   BEL-243_AA-LTR; BEL-243_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5654-6235] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2228..3226
FT                 /product="BEL-243_AA-I_2p"
FT                 /translation="MSGLVNLASELSTDVDAAQNHQKQSRGERVKQKEKLF
FT                 THADESTIASKKESSVGESWSKACSYCDKDGHQILNCASFKALDVGGRWKA
FT                 VRQRNLCRLCLIPHRKWPCRSKKECGVEGCRIRHHILLHSTRNDNTDTSMP
FT                 GGTVHQNHHRTKSFSLFRYLPVTLYGKGTQVETFVFLDDGSSSTLLEAGIA
FT                 TQLGIEGEPDSLWLSWTGKIGRHEKCSRRISVKISGAEKEEKYLLNDVRTV
FT                 RELGLPTQTLNYAELAKVFPHLQGLPVSSYVNAKPGMIIGIEHVRMLTSLK
FT                 TREGGNNEPVPQKRDWGGAFMVGIPQAKRPWNSCTYTQSNV"
FT   CDS           5135..6634
FT                 /product="BEL-243_AA-I_3p"
FT                 /translation="MARTMAYVYRAIKIWKRVLWNNERSSEPQRDELVKAE
FT                 ELLWRQAQASAYPEEVRDLMNNRRVSKRSPLYKLSAVIDEHGVIRIASRIG
FT                 CAPHVPYAAKYPVVLPRDHRITFLLVDSFHRRFLHANNETICNELRQQFYI
FT                 SRLRVLVRKVGQECQLCKIHKAKPEPPIMGPLPRVRLTPFIRPFTFVGVDY
FT                 MGPFMVKVGRSSVKRWICLFTCLTIRAIHLELVHTLTATSCVMAFRRFVSR
FT                 RGAPLEVFTDNGTNFVGAHRQLTEEKQKILKINDTCASTFTNAHTQWHFNV
FT                 PAAPHMGGPWERMVRSVKTAMQALSDNPRHPSDEALETIMLEAEGIVNSRP
FT                 LTYVSLEDANQEALTPNHFLLYGSSGIKQPTTSPVSTGNMLRDSYKLAQHI
FT                 VDEFWIRWTREYLPMLTRRAKWFDPAKPLEPGDVVVVVDDIPRNRWERGRI
FT                 LETYPDKSGQVRRAKVQTARGVFMRPAVKLALLDVTGPKMSADASPETEVI
FT                 HGVG"
XX
SQ   Sequence 6636 BP; 1832 A; 1493 C; 1752 G; 1549 T; 10 other;
     ttctactaag attgtcatcc taagttggat gatagattgt tgcccatcgg aggatcctac        60
     gtcggagtat tgcgcagtct ggacagtggt ctgtccaaga agacatcttt catccctata       120
     cgtgaagtac gggggaggaa cctaacctcg aattcaccga ctgaatgcgg cactaggacg       180
     gagttcgagg agcagctaag tgcagtaaat ttagtctgta tcctccctat tccccgttat       240
     tacatccgtt tggtcgcgaa tcgcttctct agtgataagt caatcatagt tagatctgcg       300
     attatagtta gatacatctg tctcgcgatg tcggaaaaga atgtcaatct gtcgactccg       360
     ggtggcgaga agcaatgtaa aaagtgcgat cgcatcgata tcgatgataa tatggtgtgt       420
     tgcgacgttt gtgaagcatg ggtgcatttc cagtgcgccg gtgttaccga ttccatcgga       480
     gagcccgata ggagttggaa gtgtagtgct tgtttagctg actggaatgg ttcctccaag       540
     tcggaggtgt cattcaacga gtcgtcggtt agcaagagta gtcgtgtttc gcagaggctt       600
     cagcttagtc tacaactgtt agaagaacag caaaagttga agaagaaacg ggctgcagaa       660
     gaattgaaaa tccgtcgact ggaagaagag gccaagctga aggagatgga tgaagaacaa       720
     gaatatttga ggaagaagta cgaactgttg atgcagatcg acgatgagaa agattcgtcg       780
     accaggagga gcggaataag tgtgaaaagc aagcgagatc atctggagaa gtggctgact       840
     aagggttcgt cagcagacgg agtaggaaaa ccgacagtta ctcaaacgat aacaacgctc       900
     ccgataccaa tcgtcggtga cgttgcaaac aggagctaaa gcgccgtctt taaagacgat       960
     ctcagcgaca gaaaaggccg agagtccttc cattccgctg aaccagggta tgttgtacgt      1020
     agatccgact attccagtcc agggaggaag cgtaacagct ttggcgcaat cttacgagct      1080
     cctagctacg acggcagtat cggggagcat gtcatgctgc cggtttcgtt ttcttcggcg      1140
     ccaataataa ttgtatcgac agcgggagga accgccactc catcagcagg cacagttcca      1200
     gtgttcgtac cgtctacaga catggtggtt caaggaacag atagagttag tgcgcctcag      1260
     tcttctggtt ctggtatagc accggtctac tcgtatccac ggatgattaa ccacggcttc      1320
     agcagctgta acaataccgc cggaaatcac gcacggttta aatggaaatc attcatctcg      1380
     aggactttgt tccatcccat cgaactcgtt tcatttaccg gctggaagtc aacccgtctt      1440
     gccaagtaca agttcattcc agtattctaa tgcttccgaa gctgtcgttt cgagaaatca      1500
     gccgtggcac ccggtggacc cggaagcggt agtgccaacg agttcatcat tccgctctat      1560
     cccggatgca gtggctgcac ctttcgacat tccagtcaac ccacgatgta ttcctgtaaa      1620
     tcaagcgacg gcgcacctag catacgggcc ggcatcggcg ggaaccggag gtgccatgag      1680
     taatctgcca gttccttctt taggaccaac tagcgctcaa ctggcggcac gacaagtgat      1740
     gccacgcgaa ctgccgaagt ttagtgggga ccctcaagag tggcccatat tctatagctc      1800
     cttcaagaac agttcggagg tatgcggtta cacggatgct gagaatctgg ccagattgca      1860
     gcgaagtctt ggaggttcag cactggaagc cgttcgaagc cgccttctgc tgccagcttc      1920
     cgttccattt gttatggaca ctcttcaaaa gctgtacgga cgacccgaaa cgctgatmaa      1980
     ctctcttctg aagaaggtca ggagcgtccc ctcacckaag tcggacaatt taaatacgat      2040
     cgtcgcatac ggattggcga tacaaaatct cgtcgatcac attgtcctcg ctgatcaaca      2100
     agcgcacctt gsaaatccaa tgctgttgca ggagttaata gagaagttac ccacgtccct      2160
     kaaaatgcag tggggtkcst acaaacagca gttcgcgagc gttaatttgg cgacgttcaa      2220
     cgacttcatg tcgggattag taaatctggc ctccgagctt agcaccgatg tggatgcagc      2280
     gcagaaccat cagaagcagt ctagaggaga aagagtcaaa caaaaggaaa aactgttcac      2340
     ccacgcggac gaatctacga ttgcgtcgaa gaaggagtct tcagttggag aatcttggtc      2400
     gaaagcgtgc tcatactgcg acaaagatgg acatcagatc ttgaactgcg ctagtttcaa      2460
     ggcgttggac gttggaggtc ggtggaaagc agtamggcag agaaatctat gcmgattatg      2520
     cttgataccc caccgaaagt ggccctgccg ttctaagaaa gagtgtggtg tcgagggatg      2580
     tcgtattagg caccatatac tactacacag tacacgcaac gataacaccg atacgtccat      2640
     gcccggcgga acagtccacc aaaaccatca tagaacaaaa tcgttttccc tttttcgtta      2700
     tctaccggtc actctgtacg ggaaaggcac acaagtggaa actttcgtct tcctggatga      2760
     tggatcgtct tcaacgttgc tggaagcagg aatcgcaaca caattaggta tcgaaggtga      2820
     gcccgatagc ctttggctga gttggactgg gaagattgga cgacacgaga aatgctctag      2880
     gcgaattagt gttaaaatat ctggagcaga aaaggaagaa aagtatctac taaatgatgt      2940
     tcgaactgtg cgtgagttgg gactcccaac gcaaacgtta aactacgcag aactagcaaa      3000
     agtgtttcct cacctccagg ggcttcccgt atccagctac gttaatgcca agccaggcat      3060
     gatcattgga attgagcatg tacggatgct aacgagcctg aagacaaggg aaggcggtaa      3120
     caacgaaccg gtgccgcaaa aacgcgactg gggtggtgcg tttatggtag gaattccaca      3180
     agcgaagaga ccgtggaaca gttgcacata cacgcagtcg aacgtataag taacggtgag      3240
     ctccatgatt ccatgaggaa gttctttgcg gttgaagatg ctgctgttac gcgtcagatg      3300
     gagtccgacg aagacaaacg agcacgaagt attctggaaa caacaacggc gcgaaaggga      3360
     gctcggatgg agacgggact tctctggcgg cacgataacg tctattttcc ggacagctat      3420
     aagatggcgt ttagtcgatt gaaaggactg gaaaagcggt tgacaaatga tcctgattta      3480
     cgtagaaagg caaatgaaca aattgaaagc tttgagcaga aacagtatgt tcgcaaagtg      3540
     tcgccagaag agttggggag agctgatcca catcgtcgat ggtatctacc gctaggaata      3600
     gtgacgaatc ctaaaaaacc gaacaaaata cgaatgattt gggatgcagc agcgaaggtt      3660
     ggcggagtgt gtttcaatga catgctgcta aaaggacctg atctcctcgt accgctcgtg      3720
     gaagttttgc tgcggttcag ggaaggaaaa atagccatct gttccgacat ccgtgaaatg      3780
     tttctgagga ttttaatacg ggatgaggat aaatggtcac agtgctttct gtggcgtaac      3840
     agtccggatg aggtagtcca aacatatgtg ataaacgtcg ccatgttcgg agcaaccagc      3900
     tctccgtgta cggcgcagta cacgaaaaac aaaaatgctc tcgaattcgc tgagcagtac      3960
     ccccgggcag tgagcgcgat atttaaaggg tcactacgta gatgacttcc tcgatagcgt      4020
     caataccgtg gamgaagcag ttmgactagt ccaggaagtg cagtcacatc cacgccgtca      4080
     gctggtttga attcggcaag attctttcta actcaccaga agtactcgca cgacttggag      4140
     agactagccc ggcggctagc aagccactaa accttggtaa agatgcggtc cgcgagcgcg      4200
     ttttaggagt agtctgggtt ccctctgctg atcatttcac cttcgatcga actgggctcc      4260
     aggaagtttc gagaagcagt acagaagcac ctacaaaaag gcaggttctc cgaacagtaa      4320
     tgaagctgta cgacccctta gggtttgttg cgcatttcgt agtgcacggg aaaattctta      4380
     tgcaggagat ttggagatcg gggaccaatt gggacgagcc catagcggaa catctgctcg      4440
     aactatggaa caggtggatt gaactgtatg agagcatcaa cgaagtcaag gttcctcgat      4500
     gttttttcgg agatctcaaa ccagagaggg tagatgagat agaaattcac gtgttcacgg      4560
     acgccagcgt agcggcgtgt gcatgcgtag cctatctaag aatgtcgacc aaagaaggta      4620
     aatggtgctc gatggtagca gcaaaaacca aagtagcgcc acttcggacg ctttcaatcc      4680
     ctcgcttaga acttcaagct gctatgatgg gatcacgttt gcttcataac atctgttctg      4740
     ctctcaccct aaacatccgg aagcgtttct tatggacgga ttcagctaca gtcctagcat      4800
     ggctccgttc agacggtcga cgataccatc agttcgtatc ttttcgagtt ggtgaaatcc      4860
     tgtcgctcac aagtgttgac gagtggcact acgttccatc gaaactaaat gtggccgatg      4920
     acgccaccaa gtggaattca ggaccgtctt ttgatcctga ggacagatgg tttcgtggtc      4980
     caccattctt gcgagaatca gaggatagct ggccgaaaga atcgacgaag gaagtgaaga      5040
     aaccgaggca gtaacggaag agattcgtgt tgcggcggcg catcgaacaa tagaggaagt      5100
     ggttgcagtc gaacgctttt caagttggaa tcgtatggct agaacgatgg cctatgttta      5160
     ccgggcaatc aagatctgga agcgtgtatt atggaataac gagcggagtt cggaaccaca      5220
     gagggatgaa ttggtgaagg cagaagaatt actttggcga caagcgcagg caagcgcgta      5280
     tccagaggag gttcgtgacc tgatgaataa tcgtagagtt tccaaacgta gtccattgta      5340
     caagttgtct gccgttattg atgaacacgg tgttatacga attgcaagta gaataggatg      5400
     cgctccccat gtcccgtacg cagcgaaata tcctgtagtg ttgccaagag atcaccgcat      5460
     aacatttcta ctggtggact ccttccatcg acggtttctc catgccaata atgaaaccat      5520
     ctgtaatgaa ctacgacagc agttttatat ctcaagacta cgagtactag tgcgaaaagt      5580
     tggtcaagaa tgtcaactat gcaaaataca taaagccaaa ccagaaccac caataatggg      5640
     cccgttaccc agagtgcgtc tcacgccgtt tattcgaccg tttacttttg tcggcgtcga      5700
     ctacatggga ccttttatgg ttaaggttgg gcgcagcagt gtgaaacgat ggatttgttt      5760
     attcacctgc ctcacaattc gtgccataca tctagagttg gtacacactt tgacagcaac      5820
     gtcatgtgta atggcttttc gaaggtttgt gtcaagacgc ggggcaccat tagaagtctt      5880
     tacggataat ggtactaact ttgttggcgc tcatcggcag ctaacggagg aaaagcagaa      5940
     gatcctgaag atcaacgata cttgtgcatc cacgttcacc aacgcacata ctcagtggca      6000
     ctttaatgtt ccggcagccc cccatatggg tggaccttgg gaacgtatgg tacgttccgt      6060
     caaaacagca atgcaggcct tatccgataa tccacgccat cctagcgacg aagctctgga      6120
     aacaattatg ttagaagcgg aaggcatagt gaactcacgc cctctaactt acgtatctct      6180
     agaggatgcg aaccaggaag ctctcacacc caatcatttt ttgttgtatg ggtcatccgg      6240
     tatcaagcag ccgacgacca gccctgttag tacagggaac atgctgcggg acagttacaa      6300
     acttgcacag catatcgtgg atgaattctg gattagatgg acgcgcgagt atcttccgat      6360
     gctcacgagg cgagccaagt ggttcgaccc cgcgaagccg ctggaacctg gcgatgtagt      6420
     cgttgtagtt gacgacatac caaggaaccg ctgggagaga ggacgaatat tggaaacata      6480
     tcctgacaaa tccggacaag taaggcgagc gaaggtacaa actgctcggg gagttttcat      6540
     gaggcctgct gtgaagttgg ctctactaga tgttacgggc cccaagatgt ctgctgacgc      6600
     tagtccggaa acggaagtga ttcacggggt ggggaa                                6636
//
ID   BEL-243_AA-LTR repbase;    DNA;    INV; 609 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-243_AA_;
KW   BEL-243_AA-I; BEL-243_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-609
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 609 BP; 197 A; 107 C; 117 G; 188 T; 0 other;
     tgtcgacgat acccctcatc gttactgaga ggcggtgaaa caactatccg ttcccgcact        60
     gtcggtgtaa gggagatcag atgtcatcgc aaactgaatg ttgttgacac cgaagaagca       120
     ttagtcagca ttgttgatca tagtcctgaa ttcatggtga tatatcgttg ctctataaag       180
     tgggtttgaa attagtcagt atgaattgct ttatctaatg aattgtttaa ttatagccta       240
     gttattgaag taaatttatt attggtcgag cggcagttag tcatttgacg aaaaagtgca       300
     ttaaaagtac gttgaagttg aactcgtttg catatactta ccagcgttgt cctcataacc       360
     tgaaatgaga aatagaatga ttaatactta cctaaattac ataaaaattc tgtagatttc       420
     tggagattgc gcgctagttc aaatccgagt gattgagatc ctgttaaaac cagaaaaaca       480
     ctgacaatgt aagacaaatc tttaatactt accaatgaat cacatctaat taccttacaa       540
     taaattacag cttagtagct gcttagtcac gcatctaaca agacggtgtt tactctactt       600
     acgggaaca                                                               609
//
ID   BEL-244_AA-I repbase;    DNA;    INV; 5557 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   16-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-244_AA_;
KW   BEL-244_AA-LTR; BEL-244_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5557
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
RN   [2]
RP   1-5557
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   Positions [4593-5201] - Integrase core
CC   'GATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..5554
FT                 /product="BEL-244_AA-I_1p"
FT                 /translation="MENLKQLIHQRGQVKARVTTIVQKLNEAIEHPETTSA
FT                 SQLKAFEKKLELHYSEYSAKHDSIMAQCPNVSVAEQDEKLEEFDELHTDAL
FT                 VKLNQLVDYFRAEPANNRVPQVIVTQQPLRTPIPTFDGKYEGWPKFKALFN
FT                 DLVGKCGDSDATKLQYLDKALIGEASGILDAKIINNNNYEQAWQLLEDRFE
FT                 NPRVIIDTHISGLLSMKPIAKQSYKELRDLVDTCNRHVEGLRFLEQEVSGT
FT                 AGLIVVKILSMCLDGETRKQWELTMDHGELPDLDETMKFLRSYCQVLERCE
FT                 IDKMPSSKVIAKPPVMAKTSFSPRSSHPATSTPVENMCEICQGQHCNYKCP
FT                 SFLSMSVDQRVTKVKQSGLCFNCLRKGHQIKACPSDKSCSKCSKRHHSMLH
FT                 FEQVPQPVPIPQNLNVSSQQPEVKTAVASAVPEEPVSTACSSVQRRAKHVF
FT                 LMTALVNVASKSGKVFKLRALLDSGSQVNLVSEAAVKLLGLPKYPANVPVV
FT                 GVGGAKSQIRHRVILKLFSDYANFEGDLDCLVTTKVTGRIPSVPVNVSEWK
FT                 FPTGIVLADPNFNEPRDVDLLIGAELFFRILKQAQLKLSEELPSLYETQFG
FT                 WVIAGAFEESGDEAVNVLCATSEDPLLKSIQRFFEQEELPEVKVPTSEEQE
FT                 IEDHFRKTYRRDVDGRFVVQLPFRESVNQLGNSRPLTMKRFLASEKRLANQ
FT                 PETKQMYQAFMKEYEGLGHCHEIREEDDHPSQQNYYFPHHAVLKPSSSSTK
FT                 LRVVFDGKAKSNGLSLNDVLMIGPKIQSDLFSIVLRFRKHLYAFSADVEKM
FT                 YRQVKIDPSQTHYQRIFWRDNPTEPIRVMELSTVTYGTAPASFLAVRSMIQ
FT                 LARDEMTNFPEAAEVILEDCYMDDILSGSSTLESTRQLRCDIADLLMKGKF
FT                 PVRKWCSNDDEVLEGIPDEDREKLVRIEESGANETIRALGVLWNPKSDKFL
FT                 FWRSPESIQPDEQVTKRNVLSQIARLFDPLGLISPVIVLAKSIMQQLWADG
FT                 LDWDEKLENELLNRWMTFYQSLVQLNEIQVPRCVVIPGAHRIEIHGFCDAS
FT                 GTAYGACLYLRCVQENGEVSVRLLCSKSRIAPLRRLTMPRLELCAAVVLAR
FT                 LISVVLPILKLEVDDIRLWSDSQIVLAWIKKSPEQLQIYVRNRVTEINKLT
FT                 SDYEWKYVRSESNPADLVSRGCYPRVLSCSEIWWNGPLFLQADDYEIQETP
FT                 AIKDEELPEMKEVQVCNPANEVEEEPVFDRCGTFFKLQRVLAQVVRFTRLV
FT                 RVKKEDRINFRYVSVHDMRKAMQYIVRVLQKSELRQEIQCVQRKELPKQLA
FT                 NLQPFLDEEGFLRVGGRLQNSKLPFDAKHQLLLPKDHRVTEMLIRQYHEDR
FT                 LHEGPSGLLAAIRQKYWLVNARSAIRKVTRSCVKCFRTKPRDVQPLMGNLP
FT                 EERVNSAAAFEFTGVDYAGPVTVKEGRYKPKQIKAYIALFVCLATKSIHLE
FT                 LVSDLTTEAFLSALDRFVNRRGLVRKMMSDNATNFVGASKELHQLFLMFRD
FT                 ETEKAKIDDFLLKRDIEWEFIPPRSPNFGGLWEAGVKVIKSHLHRTLGNAI
FT                 LTFEEFGTVLTHIEAVVNSRPLYSMSDDPNDPLPITPAHLMIGRPLEPIVK
FT                 PSYTGIPVNRLSRHQYMNHLREQFWAKWSRDYLSSLQSRAKWTKSEVNVKM
FT                 GTIVLLMEDNLPVQSWRLGKIVALYPGKDKVIRVADVKTAVGVFRRSVRKL
FT                 APLPIIDNDEQRISAFGIAFQPAG"
XX
SQ   Sequence 5557 BP; 1516 A; 1215 C; 1437 G; 1389 T; 0 other;
     tttggtccga atcgaaccgg ataataatca gtgatacgtc cattcgagac taagaaagtg        60
     tttccctcca ttacgagact gtgttcctcc taccgtgata aattcgtgac cctttcgaac       120
     tgaattaaga gagttgtgtc cttcgcgaac attcgtgagc cctcccattg agacctttgt       180
     caagcgcgct cttgtcaata gtgaatcgta gtacagtggt acccaagtgt agtgaaaagt       240
     aagagccctc tgtgaatgaa ctaaagtgaa gtgatagaag cgaaatagcc ctgtgaaagt       300
     gtgaaacagt gatagtgtga ccatggaaaa cctgaagcag ttgatccacc agcgtggaca       360
     agtgaaagcg cgtgtgacga cgatcgttca gaagctgaac gaagctatcg agcatcccga       420
     aacgacgagt gcctcccagt tgaaagcttt tgagaagaag ttggagttgc attattcgga       480
     gtattcggcg aagcatgatt cgatcatggc tcagtgtccg aatgtgagcg tagcagaaca       540
     agatgagaag ctagaggagt ttgatgagct gcatactgac gcgctagtga agcttaatca       600
     gctagtggat tacttccgtg ccgaacccgc caacaatcga gttccccaag tgattgtgac       660
     gcagcaacct ctcagaaccc caatcccaac ttttgatggg aagtacgaag gttggccgaa       720
     attcaaagcc cttttcaacg atttggttgg aaaatgtggt gactccgacg caaccaagct       780
     gcagtacctg gataaagcgt tgattggtga agcttccggc attcttgatg cgaagatcat       840
     caacaacaac aattacgagc aagcatggca gttgctggaa gatcgtttcg agaacccacg       900
     agtgattatc gacacccata tttccgggct gttgtcgatg aaaccgattg ccaagcagag       960
     ctacaaggag ctgagagacc tcgtcgatac ctgcaatcgt catgtggaag gattgcggtt      1020
     tttggaacaa gaagtcagcg gaacagctgg cttgatagtg gtgaagattt tgtccatgtg      1080
     tcttgatggt gaaacgcgga agcagtggga gctaaccatg gatcatggag aactgcctga      1140
     ccttgacgag accatgaagt tcctcagaag ttactgccaa gtccttgaga ggtgtgaaat      1200
     cgacaagatg ccttcttcca aagttatcgc caaaccacct gtgatggcga agaccagctt      1260
     ttcgcctaga tcgtcccatc ctgcaacttc gactccagtg gagaacatgt gtgagatatg      1320
     ccaaggccag cactgcaact ataagtgtcc gtccttcttg agtatgagtg ttgatcagcg      1380
     tgttaccaaa gtgaagcaat ccgggctgtg tttcaactgt ctccggaaag gccatcaaat      1440
     caaggcttgt ccttcggata agtcatgctc gaagtgttcc aaaaggcatc attccatgct      1500
     gcatttcgag caagtgcccc aaccagtacc gattccgcag aatttgaatg tatcgtctca      1560
     gcaaccagaa gtgaagacgg cagtagcgtc tgctgttccc gaggaacctg tgtctacagc      1620
     gtgttccagt gttcagcgtc gagcaaagca tgtgttcctg atgacggcgt tggtgaacgt      1680
     agcttcaaag agtggaaagg tgttcaagct gcgtgccctt ctcgattctg ggtcccaggt      1740
     caacctagta tccgaggctg ctgttaaact gctagggctg cctaagtacc ccgccaatgt      1800
     accagttgta ggagtaggtg gtgccaaatc tcaaatccgc catcgtgtga ttctgaagct      1860
     attttccgac tacgccaact ttgaaggaga cttggactgt ttagtgacaa cgaaggtgac      1920
     tggacggatc ccatccgttc cggtaaacgt ttctgagtgg aaatttccga ctggcattgt      1980
     gttggccgat cccaatttca acgaacctag agatgtggat ttgttgattg gtgccgagct      2040
     atttttccgt atcctgaagc aagcacaact gaaactttcg gaagaactac cttcacttta      2100
     tgagacccag tttggatggg ttatcgccgg tgcgtttgag gagtccggcg atgaggctgt      2160
     taacgtgttg tgtgccacaa gtgaggaccc gttactgaaa agtatccaga gattttttga      2220
     gcaagaagaa cttccagaag tgaaagtgcc aacgagtgaa gagcaggaga ttgaagatca      2280
     tttccgtaaa acgtatcgac gagatgtgga tggccgattc gtggttcagc taccgttccg      2340
     cgagtctgtc aatcagctag gaaactctcg accattaaca atgaagagat ttctagcaag      2400
     cgagaagcgt ctagccaacc aaccagagac gaagcagatg taccaagctt tcatgaagga      2460
     atacgaaggt cttggtcatt gccatgagat tcgtgaggaa gatgatcacc cttctcaaca      2520
     gaattattat tttccacatc atgctgtact caaaccttcg agttccagca caaagttacg      2580
     tgttgtgttc gatggcaagg cgaagtctaa cgggctatcc cttaacgatg tgttgatgat      2640
     tggccccaaa atccagagtg atctattttc catcgtactg cgattccgaa agcatctcta      2700
     tgcattttca gcagacgttg agaaaatgta taggcaagtg aagatcgatc caagccagac      2760
     gcactaccag cgcatcttct ggcgtgacaa tcctacggaa ccgatacgag taatggagtt      2820
     atcgacagtg acctacggga cggcaccagc atccttcctt gcagtgaggt ccatgattca      2880
     actagcgaga gacgaaatga ccaattttcc tgaagctgca gaggtcatac tagaagattg      2940
     ttatatggat gacattctga gtggctcttc aacattggaa tccacaaggc agctgcgatg      3000
     cgatattgcg gatcttctga tgaaaggcaa attccccgtc cgaaagtggt gttcaaacga      3060
     tgatgaggtg cttgaaggaa ttccggatga ggatcgagag aagctagttc gtattgagga      3120
     gtctggtgcc aacgaaacta ttcgagccct tggtgttttg tggaatccca aaagtgataa      3180
     gtttttgttc tggagaagtc cggaatcgat acaacccgac gagcaggtaa cgaaaaggaa      3240
     tgtcctctct caaatagcaa ggcttttcga ccctctcggc ctgatatcgc cggtaattgt      3300
     gttggccaag tctatcatgc agcagctatg ggcagatggt ttggactggg acgagaaact      3360
     tgagaacgag ttgttaaata ggtggatgac cttttatcag tcacttgtgc agctcaacga      3420
     gattcaagtg ccgagatgtg ttgtgattcc tggagcgcat cgtattgaga tccacggttt      3480
     ttgtgatgcc tcaggtactg cctacggtgc atgtctttat ctgcgctgtg tccaagagaa      3540
     tggagaagtc tctgttagat tgttgtgcag taaatctagg attgctccat tgcgtcgtct      3600
     caccatgccc agactggagt tgtgtgccgc tgtcgttctg gccagactaa tcagcgtagt      3660
     gttgcctata ttgaaactcg aagtcgacga tatccgattg tggtctgata gccagattgt      3720
     tctggcatgg ataaagaaga gtcccgaaca acttcaaatc tacgtcagaa accgagtaac      3780
     agagatcaac aaactgacca gtgactatga gtggaaatat gtcaggtcgg agagtaatcc      3840
     ggcagacctg gtgtccagag gatgttaccc aagagtgttg agttgttccg aaatttggtg      3900
     gaacggccca ctatttctgc aagctgacga ttacgagatc caggagactc cagcgatcaa      3960
     ggatgaagaa ttaccggaaa tgaaggaagt gcaagtgtgt aatccagcaa acgaggtaga      4020
     agaagagcca gtgttcgacc gatgtggcac gtttttcaaa ctgcaacgtg tactggcaca      4080
     agtggtgcga tttactcgac tggtacgtgt gaaaaaggag gaccgcatca atttccgtta      4140
     cgtttccgtg cacgatatgc gaaaggcaat gcagtatata gtgagagttt tgcagaaaag      4200
     tgagttaagg caagagatcc agtgtgttca gcgcaaggaa ttgccgaaac agcttgcgaa      4260
     tctgcaacca tttttggatg aagaaggttt cttgcgcgtt ggcgggcgtc tacagaactc      4320
     caagttacca tttgacgcca agcaccagtt gttacttcca aaagatcatc gagtgaccga      4380
     gatgctgatt cgtcagtacc acgaggacag acttcatgaa ggaccatccg gtctactggc      4440
     agcaataagg cagaagtatt ggctggtcaa cgctcggtcc gccattcgaa aggtgacacg      4500
     cagctgcgta aaatgcttcc ggactaagcc acgagatgtt caacccttaa tgggaaatct      4560
     accggaagaa cgtgtgaatt cagcagcagc gttcgaattc accggtgtag attacgccgg      4620
     tccggtaaca gtgaaagaag gcagatacaa gccgaagcaa atcaaggcat acatcgctct      4680
     ttttgtgtgc cttgcgacga aatctatcca cctcgagtta gtttcggatt tgacaaccga      4740
     agctttcctt tcagccttag atcgttttgt caaccgacgt ggactggtgc gcaaaatgat      4800
     gtcagataac gcgaccaatt ttgtcggcgc atccaaggag ctccaccagc tgttcttgat      4860
     gttccgtgat gaaaccgaga aggcaaagat cgacgatttc ctgctcaaac gtgacataga      4920
     gtgggaattc attccgccaa gatccccaaa ctttgggggt ttatgggaag caggtgtcaa      4980
     ggttatcaag tcccacctac atcgaacttt gggaaacgcg attttgacgt ttgaggagtt      5040
     tggaacggtt ctaactcaca ttgaagccgt tgtgaactcg aggccgttgt attcaatgtc      5100
     tgacgaccca aacgatccac ttccaataac tcctgctcat ttgatgattg gaagaccatt      5160
     ggagccgatt gtgaagccat cgtataccgg aataccagtg aaccgtttat cccgtcatca      5220
     gtatatgaac catttgcgtg aacagttttg ggctaagtgg tcaagagact atttgtcatc      5280
     gcttcaatca agggcaaaat ggacgaaaag tgaagttaat gtgaaaatgg gtaccattgt      5340
     actactgatg gaggacaatt taccggttca atcttggagg ctgggaaaaa tcgttgcact      5400
     ttacccgggg aaagacaaag tgatccgagt cgccgacgtg aagactgccg tgggtgtgtt      5460
     tcgacgttcc gtccgaaagt tagcgccctt acccatcatc gataacgacg agcagaggat      5520
     ttccgctttt ggaattgcat tccaaccggc gggagta                               5557
//
ID   BEL-244_AA-LTR repbase;    DNA;    INV; 1024 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-244_AA_;
KW   BEL-244_AA-I; BEL-244_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1024
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1024 BP; 208 A; 237 C; 298 G; 281 T; 0 other;
     tgtacgcgcc ctacgcgtgc agaataagct atgcaagcaa tccatccaaa ccagcccatc        60
     ttataccagc gaataacgca acgagacggt ttccaccaac ttgtgcatcg aatgggcgga       120
     gcttgggctt caacttggtt ggctgttaca gctgtagaga aaaatatata agcacattca       180
     ttgtttcaat atgcattcag tcttaataaa accattcccg cgacaacatc aaaaagtaaa       240
     agtcttttct gaacgagagc cgaagagtgt ggtgacagtg agccagaccg gtcaacgagg       300
     cgatcggttg gcattttttt ccctttcctt tttctctgct tccacgagat cgtgagccga       360
     gacggcgacg agtgtgcctg tgtctctctc cctttcgggt cagcgttggc gagtcatcgc       420
     gaagagtgtg tgtgtgcgcc gctcatccga gccggcgttg tcgagcaaga cagtgaacgt       480
     gttgcgtctt gttcggcgtt cctctttcct tcgttcgtca aacgattggt gtgcggcggt       540
     gctgttccag tgaagcgaag ctgctgtggt ggtgctgttc ggtcgaaatt gctaatgcga       600
     cgattcacag gagtgtgccg ggagttgcta agataatatt atagagtcgt tttcacgatt       660
     aggctacact cctggtgatt tatcgttagc gagcaagcga tcacgacccg aaattggaag       720
     gtgtgaggca caaagctgga agtgtgaacg tgttttcggc atccttgccg tggtccttcg       780
     tcggagtgtt cctgtgctgg tgaccgcaac gtgtgcggtt gtcggcattc cgttggtggc       840
     tgtggcgtgc acggctgctg gtggtgtgtt tcctgcgctg gtgaccgtga cgtgcacggt       900
     tgtcggcaat ctcgtctgcg tcggactgct tgtggctgtg atgtgcacgg ctattggtgg       960
     ctcgatcacg aggtaagtgt gacgatttcc ctcctgagtg tattgagagt ttgagtaccc      1020
     aaca                                                                   1024
//
ID   BEL-246_AA-I repbase;    DNA;    INV; 5930 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-246_AA_;
KW   BEL-246_AA-LTR; BEL-246_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5930
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2500-2500 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4959-5519] - Integrase core
CC   'ATAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..5930
FT                 /product="BEL-246_AA-I_1p"
FT                 /translation="MEDQESHNPAASRNCQSCDRPDTAESEMVQCSVCKLW
FT                 EHFGCAGVDSSVKHPDVRYVCRKCAAKQGPSVGGVLEVPLGDRYKKKTSKG
FT                 GSKTASKKGKTLLDPPKSVTSSIRAKLLEEELKLVAEEQRMQEEALQEQED
FT                 IRRRQLVEEERRLEEKRRLAEEESKMRERKLQEELELKRKKMQIRKESLEK
FT                 RQALIREAASASSRSSTIQDSNERVNKWLNFQNDVGGSRGALEDDENGEQH
FT                 PADHDPLEDPIDPAIEYPDIRALTIVSDLPRLPNPPAQVTQNALTHSLPIR
FT                 PATHTLTQVQIAARQVLGKDLPTFGGNPEDWPIFISNFEQSTATCGYSEAE
FT                 NLVRLQRCLKGNALESVRSRLLLPASVPHVINTLRTLYGRPELLIRSLMAK
FT                 IRQVPAPRHDRLETLIQFGLSVQNLVDHLKAANQQNHLSNPALMQELVEKL
FT                 PGSMRIDWAIYKNKNLPATLETFGDYMAGLVTAASEVSFDLPGESTTVRND
FT                 KQKSRESGNIYAHSGERLPLSTNEGSSSWTTSATNGGPNPLTSLKISKPCA
FT                 ACGRSGHRVAECHQFKGATLDERWKLVQLKGLCRTCLNSHGKWPCRSWNGC
FT                 GVEGCRQKHNTLLHTTSSSPGNVGMSASHVLSEDLKWPLFRIVPVVLFSGS
FT                 TSQTIFAFIDEGSSYTLLEESVAKQLGARGQLEPLTLQWTGNVKRKESKSH
FT                 RVQIEIAGKGNDHRYRLVDARTVSRLVLPSQSLKYGELANRFPHLRGLPLE
FT                 DYELVQPKLLIGLDNLRLCVPLKLREGGPKDPIGAKCRLGWSIYGCVPWQS
FT                 PQTAIVSFHVGDVSDSDRELNEQLRDYFTLETADISHPLQTTESEEDKRAR
FT                 QLLRDTTNRVPSGCGYETGLLWKTDKPNFPDSYPMAVRRLEALERKLQKDP
FT                 ELQRRVREQIVEYEHKGYAHKASLAELTSVPADQVWYLPLGVVTNPRKPGK
FT                 VRLIWDAAAKVNNVSFNSKMLKGPDLLSPLPQVLRQFRHFPVAVCGDIMEM
FT                 FHQIKIRAPDSQSQRFLFRDNPCDIPRVYVMDVATFGSTCSPASAQYIKNL
FT                 NAEEFSNKYPRAAAAIQNKHYVDDYLDSFMTVQEAIEVVNEVKLVHSKAGF
FT                 TLRHFLSNETPVLKGIGSACEEEPKNLDLERGEKLESVLGMQWIPSEDVFV
FT                 YTFGMREDLQPILVEGHIPTKREIARIVMSLFDPLGFIAFFLVHGKILLQD
FT                 IWAKGTEWDQKIPEDINERWQQWSKLFNQLSRLRIPRCYFRSPFPTRLDGL
FT                 QLHLFVDASESAYACVIYFRLETNSDTQVAFVGAKTKVAPLKTLSIPRLEL
FT                 QAAVLGVRLLDTIQSQHEFPISRRFCWSDSGTVLAWIRSNDHRRFHKFVAV
FT                 RVGEILASTEQQEWRWVPTKFNVADLATKWGTNPQLTMENPWYHGPSFIHE
FT                 PEETWPQQRSTTSTNEELRPAYFNFVHFDPIVDFDRFSSWTRLLRSSAYVL
FT                 RFLDNVRRKKHGITLQLGVLDSNELRRAEEMLWKLAQAETYPDEIAVLKKS
FT                 QGPPDRRHPVVEKSSGIYAKWPFIDERGTLRSRGRIGAAPYVAMEAKYPVI
FT                 LPKQHAITTLIVDWFHRRFRHANRETVVNEIRQRFDIPALRRLVDKATKNC
FT                 VVCRIAKAAPKPPAMAPLPEMRLAAFNQPFTFTGLDYFGPVLVKVARSNVK
FT                 RWVALFTCLTTRAIHLELVHSLSTESCIMAVQRFVSRRGLPREFWTDNATC
FT                 FRGTSNELETLTEATKRAMAEKFTTPQTAWKFIPPSTPHMGGAWERLVRSV
FT                 KVAIGAIMDGPRRPDDETLETILLEAEAMINARPLTYVPLESADQEALTPN
FT                 HFLLGNSSGLKFMPTETMDTRSTLRSSWKLARYITSDFWNRWLKEYLPVIT
FT                 RRCKWFQDVKDIAVGDLVLVVDGKSKNQWIRGRIEEVYPGRDGRVRQASVR
FT                 TSTGVFRRAAVKLAVLDVVEDRKPLSSVLDIPGPHQGLRAGV"
XX
SQ   Sequence 5930 BP; 1576 A; 1500 C; 1565 G; 1288 T; 1 other;
     aaacttcaag aaatttgtgg tagtaagcaa ggatggaaga ccaggagtcc cacaaccctg        60
     ccgcctcacg gaactgccag tcatgcgatc gtcctgatac ggcagagagc gagatggtcc       120
     agtgcagtgt ctgcaaattg tgggagcact tcggctgcgc aggagttgac agtagtgtaa       180
     aacatcccga tgtcaggtat gtttgtagga agtgcgcggc caagcagggg ccttctgtcg       240
     gaggtgtgct ggaagtgccc ctcggcgata ggtataagaa gaaaacctct aaaggaggtt       300
     ctaaaacagc ttcaaagaaa gggaaaaccc ttctcgatcc accgaagagt gtaacttcca       360
     gtatccgtgc taaactgttg gaggaagagt tgaagctcgt cgctgaagag cagcggatgc       420
     aggaagaagc actacaggag caggaggata taagaaggcg tcagctagtc gaagaggaac       480
     gccgactgga ggaaaagcgg cggctagcgg aagaggaaag caagatgcgc gaacgaaaac       540
     tgcaggagga actcgagcta aaacgaaaga agatgcagat ccggaaggag tcacttgaaa       600
     aacgccaggc cctcatccga gaggcagcgt cggcgagtag caggagcagt acgatccaag       660
     attcgaacga aagggtaaac aagtggctga attttcagaa cgatgttgga ggatctagag       720
     gagctctgga ggacgacgag aatggggagc aacatccagc cgatcacgat ccactagaag       780
     atcccataga cccagcaatc gagtaccctg atataagagc gcttacgatc gtatcagatc       840
     ttccccgttt accgaaccca ccagcccaag tgacgcaaaa tgctctgacg cactcgttgc       900
     ccatccgtcc agctactcac acgctcacgc aagtgcaaat cgccgcgcgg caggttctgg       960
     gcaaggacct acccactttc ggaggaaacc cagaagactg gccgatattt attagcaatt      1020
     tcgaacagtc cactgccacc tgtggatact cagaggccga gaatctggtc cggcttcaac      1080
     gatgtttgaa gggaaacgct ctggagtcgg tccgtagccg attactctta cctgcaagtg      1140
     taccgcatgt aattaacacc ctgcgtacac tgtatggtag accagaactt ctcattcggt      1200
     cactgatggc gaaaatacgc caggttccag ctcctcgaca cgatcgctta gagacactaa      1260
     tacaattcgg tctgtcggtc caaaatctgg tcgatcatct aaaagcggca aaccagcaaa      1320
     atcatctttc gaatccggca ttgatgcaag aacttgtaga aaaactccct ggttcaatgc      1380
     ggattgactg ggcaatctat aaaaacaaaa accttccggc gaccctcgaa accttcgggg      1440
     actacatggc cgggctggta acggcggcga gtgaggtgtc ttttgacctt cctggtgaaa      1500
     gcacaacagt gagaaacgac aaacagaaat ccagggagtc cggtaacatc tacgcacatt      1560
     ctggtgaacg actgcctctt tcgaccaatg aagggtcatc ctcgtggaca acttccgcaa      1620
     caaacggtgg gccgaatcct ctcacctcct tgaagattag caagccgtgt gcagcctgcg      1680
     gtcggagtgg acatcgagtg gcggaatgcc atcagttcaa gggcgctact ctggatgaac      1740
     gctggaaact ggtacagctt aagggtttgt gtcggacgtg cctcaacagt cacggcaaat      1800
     ggccatgccg ttcctggaat ggatgtggtg tcgaaggatg taggcaaaag cataacactc      1860
     tcctacacac cacctcttcc tcccctggaa acgtaggaat gtcagcgagt cacgtgctgt      1920
     cggaagactt gaaatggccg ctctttcgca ttgtccccgt cgttctcttc agtggcagta      1980
     catcgcaaac aatatttgcc ttcatcgacg aaggctcctc ttacactctg ttggaggaat      2040
     cagtcgctaa gcagctcgga gcaagaggtc agctagagcc actaacactc caatggaccg      2100
     gaaacgtaaa acggaaagag tcgaaatccc accgtgtcca aattgaaatt gcaggcaagg      2160
     gcaacgacca ccggtacaga ttagtcgatg ctcgtaccgt aagccgactt gtcttacctt      2220
     cacaatctct caaatacggt gaactggcca atcggtttcc tcatcttcgt ggtctccccc      2280
     tagaggacta cgaactagtc caacctaagt tgttgatagg gctggacaat cttagattgt      2340
     gcgttccgct aaagctgcga gaagggggac caaaggatcc aatcggggcg aaatgtagac      2400
     tagggtggag catctacggt tgcgtaccct ggcagtcgcc tcaaactgca atcgttagct      2460
     ttcacgtcgg agatgtatca gattcggatc gggaattgaa cgagcagctt cgtgactact      2520
     tcaccctaga gaccgcagat atttcgcatc cacttcagac cacagagtcg gaggaagata      2580
     agcgtgccag acagctgctg agggacacaa cgaatcgtgt gccctctgga tgtgggtacg      2640
     aaaccgggct gctttggaaa acagacaaac caaactttcc cgatagctac cccatggctg      2700
     ttcgtcggct ggaagctcta gaacggaagc tgcagaagga tccagagttg cagcgaagag      2760
     tgcgagaaca gatcgtagaa tacgaacata aaggatacgc ccacaaagcg agcctggctg      2820
     aactgacctc agttccggct gatcaagtgt ggtacctccc gctgggcgtt gttacgaatc      2880
     ccagaaaacc cgggaaggtg cgactaatct gggatgcagc ggctaaagtg aacaacgttt      2940
     ccttcaattc caagatgctc aaggggccgg acttgctttc cccacttcct caagtacttc      3000
     gtcagtttcg tcattttcct gtcgcggtgt gcggagatat tatggagatg ttccatcaga      3060
     taaagatccg cgcaccggac agccaatcac aacggtttct gttccgcgac aacccgtgcg      3120
     atataccccg ggtgtatgtg atggacgtcg ccacatttgg ctcgacctgt tccccagcct      3180
     ccgcacagta catcaagaac ttgaacgcag aggagttctc caacaaatac cctcgagcag      3240
     cagcggctat ccagaacaaa cactatgtgg acgattacct tgacagcttt atgacagtcc      3300
     aggaggcgat cgaggtcgtc aacgaggtca agttggttca ctccaaagct ggattcacac      3360
     tgcgtcattt cttatctaac gaaacacctg ttcttaaggg aatcgggtca gcatgtgaag      3420
     aagaaccgaa aaacctggac ctagagcgag gagaaaagct ggagtcggtg cttggcatgc      3480
     agtggattcc atccgaagat gtgttcgtgt acacatttgg aatgagagaa gatctgcagc      3540
     ccatactcgt cgaaggtcat atccccacta agcgagagat cgccaggatt gtgatgagtc      3600
     tgttcgaccc tctcgggttt atcgcctttt tcctcgtaca tggtaagatc ctgctacaag      3660
     acatttgggc taaaggtacg gagtgggatc aaaagatacc ggaagatatc aatgagcggt      3720
     ggcagcagtg gtcaaaactt ttcaatcagt tgagtcgact tcgcattccc cggtgctatt      3780
     tccgttcgcc ttttcccaca aggttggacg gtcttcaact tcatcttttt gtcgacgcca      3840
     gcgagtcagc atacgcttgc gtaatatact ttcgccttga gacaaacagt gacacgcagg      3900
     tggcgttcgt cggcgccaag accaaagttg ctccgttgaa aacactctcg atcccaagac      3960
     ttgagttgca agcggccgta ctcggtgttc gtttgctaga cactattcaa agtcagcacg      4020
     agttcccgat cagccgtcgc ttctgctgga gcgattcggg tacagtgctt gcgtggattc      4080
     gctccaatga ccacagacgt ttccataagt ttgtcgccgt ccgcgtcggc gaaattcttg      4140
     cttccacaga gcaacaggag tggaggtggg tgccgacgaa gtttaacgtc gccgatctgg      4200
     ctaccaagtg gggaacaaat ccacagttaa ccatggaaaa cccttggtac cacgggccga      4260
     gcttcatcca cgaaccggaa gagacctggc ctcaacaacg atcgaccact tcaacgaacg      4320
     aagagttacg acctgcatac ttcaacttcg ttcattttga tcccattgtg gacttcgatc      4380
     ggttcagcag ttggacgagg ctcctccgtt catcagcata cgtgctacgt ttcctcgata      4440
     atgttcgccg aaagaagcac ggaatcactt tgcagcttgg cgttctcgac agcaacgaac      4500
     tacggcgagc tgaagaaatg ctgtggaagc tagcccaggc tgaaacttac ccggatgaaa      4560
     tcgccgttct aaaaaaatcc caaggcccgc cggatcgtcg tcacccagtg gtggagaagt      4620
     ccagcggtat ctacgctaaa tggcctttca ttgacgagag aggaactctg cggagtcgtg      4680
     gtcgaattgg cgctgcacca tacgtagcga tggaagcgaa gtatcctgta attcttccaa      4740
     agcagcatgc gatcaccact ctgattgtag actggttcca ccgccgnttc cggcacgcaa      4800
     accgtgagac cgtcgttaac gaaatccgcc aacgtttcga cattccggca ctgaggagat      4860
     tggtggataa agccacaaaa aactgcgtag tttgtcgcat cgcaaaggca gccccgaaac      4920
     cacccgcgat ggctcctcta cctgaaatgc gtctggcagc atttaatcaa ccattcactt      4980
     tcactgggtt ggactatttt ggcccagtgc tcgttaaggt agcacgaagt aacgtcaagc      5040
     ggtgggtggc actctttacc tgcctgacca ctagagctat ccacctagaa ctggtgcata      5100
     gtttgagcac ggagtcgtgt atcatggccg ttcaacgttt cgtctctcgc cgcggtttgc      5160
     cgagggaatt ctggacggat aacgccacat gtttccgagg aacaagtaac gaattggaaa      5220
     cacttaccga agcaacaaag agggccatgg ctgaaaagtt cacaacaccg cagacagcct      5280
     ggaagtttat cccaccatct acgccgcaca tgggtggggc atgggagaga cttgtgcgct      5340
     cagtcaaggt ggcaatcgga gcaataatgg atggaccacg tagaccggac gacgaaacgt      5400
     tagaaacgat tcttctcgag gcggaggcaa tgatcaacgc aaggcctctg acatacgtcc      5460
     cgctagagtc tgcggatcaa gaagctttga cgcccaatca ttttttgttg ggcaattcgt      5520
     ccggcttgaa attcatgcct acggagacca tggacactcg ttcaaccctt cgtagcagct      5580
     ggaagctagc cagatacatc accagcgact tctggaaccg atggctgaag gaatatctgc      5640
     cggtgattac acgtagatgt aaatggttcc aggacgtcaa ggatattgca gtaggagacc      5700
     tggtcttagt ggttgacggc aaatccaaga accagtggat tcgaggccgt atagaagagg      5760
     tttatcctgg gagagatggt agagtacggc aggcttctgt gcgaacgtcg acaggggtct      5820
     tccgaagagc agctgtaaaa ctagctgttc tcgatgtcgt ggaggatcgt aaacctctct      5880
     ccagtgttct ggatattccg ggtccacacc aaggtttacg ggcgggggta                 5930
//
ID   BEL-246_AA-LTR repbase;    DNA;    INV; 570 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-246_AA_;
KW   BEL-246_AA-I; BEL-246_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-570
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2501-2501 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 570 BP; 180 A; 111 C; 104 G; 175 T; 0 other;
     tgtgccgaca agacccctcg attaggccgt cgcagcacaa cacttgccaa tgacagcgag        60
     caaagaggag aagaatgaca taactgacgc tctgtcagac agttattaag atagaaagtc       120
     atgatgttca acaaagtaat gaattgcatt gtcacctaaa cagttcgtaa actcacgata       180
     gtgaaatttg ttatcctaat tttgaaattc tattctagat tgagctttcg tgcataaatt       240
     gaatatccta tttcttaagc ctatcccaaa agtagatcca tcattgaatt cgtcaaattc       300
     atcgaagtag atcgtaagtt gttattattt gtttcccaag aatcccagtt gaattgcgtc       360
     gttatatagg tgaccagtta attgtaattg agggaattcg cggcccaaac ttgctgggtt       420
     tgactagacg gtcaccaaat ttgtaagtgc tacacaatta catttcttta aattgattaa       480
     ttaaataaaa ctacaatatt ctagcttgaa gctaaccttc cacgagaatt cgagtttgct       540
     ttcgagagtt ggtgtttccc taaccccaca                                        570
//
ID   BEL-247_AA-I repbase;    DNA;    INV; 6214 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-247_AA_;
KW   BEL-247_AA-LTR; BEL-247_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6214
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2502-2502 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5181-5738] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           15..3029
FT                 /product="BEL-247_AA-I_1p"
FT                 /translation="MAQQTNDTGISRDTNDHHFSCVACERPDSVDNVVACD
FT                 HCGHWWHFSCAGVTDSVADSNWTCSRCLPLPVYRGSTSSKLSSASRRVRLQ
FT                 LELQHLAEKREFERTQMNLEVEKRFLEKKCQLLQASLLEVDDDVDHRSVRS
FT                 RVDEIESRERAKSVNNWVEAHSSISSRPPGIEVMDENGATGGKEITEDFRN
FT                 EDSTAQKSGIVKFDLQLIRKQLDQCLQAAGPTPEQVQELQQLIQRCQIRIQ
FT                 NTSTAQQSSSTKIPCQSTGAIPKNVPKGSKVRDTEKISFIQHAPLPLSITR
FT                 ISSKSPLAPRVPSVPELIDSIPLSHSSLSASPAEQQLKTSGFPKSTGASTN
FT                 LPQMMKSAAMIASNCRERNVVISNPEQVPSSSTFAVPGIDSSHCATVPSPT
FT                 PAPPVNPFPPIYRPTQEQLVARQVMPRDLPEFSGDPEDWPIFISSFNHSTS
FT                 ACGYSQVENLARLQRCLKGNAMKAVRFYLLSPESVPDVIKTLQTLYGHPEV
FT                 IINKLIRNVRESPTPKADKLEMLLEFGITVRNLTQHLIATEHHAHLMNPIL
FT                 LQEIIEKLPANVKLQWAQYIQAAPEVNLRTLSDFMTSVMESVSKVCSFVGT
FT                 QSRLKDKNNLYAHVEISQENSVERERTEPEKKCALCKGQGHRVKDCKVFKD
FT                 SSVENRWKSVHNLKLCRTCLNFHGRRPCRSSNRCGVENCEFRHHPLLHTVP
FT                 KYLPDQVSNANHAYHHCGQSVLFRILPVTIHSATKSIETFAFLDEGSSATL
FT                 LESELANELGVKGPTMPLCLKWTANMGRSEDESQIISIEVSEVGKRLRYRL
FT                 DNARTVRGLNLAPQTLRFDELQDKFPHLAGLPVRSYEAAIPKLLIGLRNLA
FT                 LAVPQKVKEGTGGPIAVKTRLGWCVYGCFEQNRMVEQLNYHLCDCNVDGRL
FT                 DSMLKDFFSGEDIAPPYQQLEPIEVIRARNILRRTTRKIGNRFQTGLLWRF
FT                 DNIEMPDNFPLALRRLECLERRMKQDEKLKLNVHRQVKEYQDKGYAHAAT"
FT   CDS           3264..6215
FT                 /product="BEL-247_AA-I_2p"
FT                 /translation="MFHQIEIIPTDRHSQRFLFRNEPTDAPTIFLMDVATF
FT                 GATCSPTIAQFVKNENAKEFAEQYPRAVDGIVKGHYVDDYLDSFATIEEAK
FT                 KVAAEVRQIHSEGGFFLHNWASNAPAILAHLGELPKSGAKNLTAAKVDNSE
FT                 RVLGMQWSSEIDTLTFSLTFNSEIRTIIESNARPTKRQMLKCVMSIFDPLG
FT                 LVASFLIHGKVLMQDVWRTGIKWDEHVADKVYDQWQRWIAVFERLKTIQVP
FT                 RCYFKEANNEVYRSTQIHVFVDASETAYAAAVYFRTLQQDGAPQCSLVTAK
FT                 AKVAPLKYHSIPRLELMAAVLGTRLLSFVQQGHSQLTAPTCFLWSDSKTVL
FT                 AWIRSDHRRYQQFVACRVGEILTSSNESQWRWVPSKYNVADEATKWGKGPC
FT                 FEHSSRWFVAPSFLYYPESDWPQEQEKVSATDEELRSCYIHQMVSRDVLID
FT                 FARFSNWNRLVRAVAYFKRFVSRWLRKNNSMVWNADPTQEELHDAQVFLWR
FT                 TAQAEGYFEEVTILERNKSLPKEKRECLPKTSSLYQLTPFLDEEGVLRIDG
FT                 RARGAKAPAIRLKCPIILPKCHKITQLLIDSYHQKYLHGNSETIVNEIRQV
FT                 FHIPHLRVLVRKQSRRCQWCLIYKTKPVTPRMAPLPDARLSPFVRPFSYVG
FT                 LDYFGPILVKLGRSNVKRWIAVFTCLTIRAVHVEVAFDLTTQSCINCIRRF
FT                 VCRRGAPTEIHSDNATNFIGSDSVLQSQIQKINQESSATFTNASTKWVFIP
FT                 PSSPHMGGAWERLVRSIKVAMMNLSQTRKMDDEALQTVVVEAEAIVNSRPL
FT                 TYLPLDSEEQESLTPNHFLLYSSSGIIQPSIPINESARDPIKAYDLIQRNL
FT                 DHFWIRWTQEYLPTLTRRTKWFAETKPVEVGDLVIVIDEARRNGWVRGRVQ
FT                 EVLPGRDGRIRRAVVQTANGLFRRAVSKLAVLDVTRAGKAEPDTHRYGEEN
FT                 VATRAPQLATLSTSNETKFTNLSRPSKQA"
XX
SQ   Sequence 6214 BP; 1808 A; 1427 C; 1425 G; 1551 T; 3 other;
     aacttcaaga aattatggct caacaaacaa acgataccgg aatctcccgt gatacaaacg        60
     atcaccactt cagctgcgta gcttgcgaaa gaccggatag tgtggacaac gtcgtggcct       120
     gtgaccactg tggacactgg tggcattttt cctgtgctgg agttacagac tccgtcgctg       180
     atagtaattg gacctgttcc agatgccttc cgttaccggt ttatcgaggc tctacatcat       240
     cgaagcttag ttcagctagc aggagagttc gtttacaact agagctacaa catttagccg       300
     agaaacgcga atttgaaaga acacaaatga acctagaagt cgagaaacgg tttttggaga       360
     agaaatgcca gttgttgcag gcgtcgctac tagaagtaga tgatgacgta gaccaccgaa       420
     gtgtaagaag ccgagtggat gagatagagt ctcgagagcg tgccaagtcg gtaaacaact       480
     gggtggaagc ccactcttca attagctccc gacccccggg aatcgaggtg atggatgaaa       540
     acggtgcaac tggaggaaag gaaataaccg aagattttcg taatgaagat tcaactgcgc       600
     aaaagtcagg gattgttaaa tttgatttgc aactgatccg aaagcagctc gaccaatgcc       660
     tgcaagcagc aggaccgacc ccagaacaag tgcaagaact gcagcagtta atccaacgtt       720
     gtcagatacg catccaaaat acttcaacgg cacaacaatc atcgtcgaca aaaattccat       780
     gtcaatcaac tggggcaatc ccaaagaacg tgcctaaagg ttccaaagta agagatacgg       840
     aaaaaatctc gttcattcaa cacgcacctt taccgttatc gataacacgc atatcttcca       900
     agtcaccact tgctcctcga gtaccatcgg ttccagaact aattgattct atacctctgt       960
     cacattcaag tctatcggcg tcgccggcag agcaacagtt gaaaacgtca ggatttccta      1020
     aatcaactgg agcctctacg aatctgcccc aaatgatgaa gtcggcagct atgatagctt      1080
     caaactgccg ggagaggaat gttgtaatat cgaatccaga gcaagttccg tcctcaagca      1140
     ccttcgctgt accaggcata gattcatctc actgtgcaac agttccgtca ccgactccag      1200
     ctcctccggt gaatccgttt cctccgatat atcgacctac tcaagaacaa ttagtggccc      1260
     gacaagtaat gccacgagat ttgccggagt tctccggtga cccagaagat tggccaatct      1320
     tcataagcag cttcaaccac tcgacttctg cttgtggata cagtcaggtg gaaaatttag      1380
     ctcgacttca gcgttgcttg aaaggcaacg ctatgaaagc ggttcggttt tacctgttat      1440
     caccagaatc tgttcctgat gtaattaaga cgctgcaaac gctatacggc catcctgaag      1500
     taattatcaa caaactgata cgtaatgtgc gagagagtcc aactccgaaa gcggataaat      1560
     tggagatgtt actcgaattc ggtataacag tacgtaacct tacccaacat ctcattgcta      1620
     ctgagcatca tgcacacctg atgaacccaa tactgctgca agagatcatc gagaagctgc      1680
     cagccaacgt gaagctccag tgggcgcagt acattcaagc tgctcccgaa gtcaatcttc      1740
     gaacgttgag cgatttcatg acatcggtta tggaatccgt tagtaaagtt tgttcgtttg      1800
     tagggactca gtcgaggttg aaagataaga ataatcttta tgctcacgtt gaaatcagtc      1860
     aggagaactc agtagaaagg gaacggacag aacccgaaaa gaaatgtgct ttatgtaaag      1920
     gacagggcca ccgtgtaaaa gactgcaagg tattcaaaga tagtagtgtt gaaaaccgtt      1980
     ggaaaagtgt tcataatttg aaactatgtc gcacgtgtct taactttcat ggccgcagac      2040
     cttgtaggag ctctaatcgt tgcggggttg aaaattgtga gtttcgccac catcctttgt      2100
     tacacactgt gcctaagtat ttgccagatc aagtctccaa cgccaaccat gcctaccatc      2160
     attgtggcca atcagttttg tttcgcatac tgccagtaac aatacacagt gcgacgaaat      2220
     ccatagaaac gtttgccttc ctggatgaag gctcttctgc aacacttctt gaaagcgagc      2280
     tcgccaacga acttggagtg aaaggaccca ccatgcctct ttgcttgaaa tggacagcaa      2340
     atatgggccg ctcagaagac gaatcccaaa taatttctat cgaagtttcc gaggtcggta      2400
     agcggcttcg ttatagattg gacaacgccc ggacagttag aggtttaaat cttgcgccac      2460
     aaaccttgcg tttcgatgaa ctacaagata aatttccgca tcttgctggt ttgcctgtgc      2520
     gcagctatga agcagcaatc ccaaaattac tgattggact acgcaacttg gcgctagccg      2580
     tcccgcaaaa ggtaaaagag ggaactggag gtccaattgc ggtcaaaacg cgcttaggat      2640
     ggtgtgtata tggatgcttc gaacaaaata gaatggtgga acagttgaac tatcaccttt      2700
     gcgactgtaa tgttgacgga agactggact ctatgctcaa ggattttttc agtggagaag      2760
     atattgctcc accatatcag cagctagaac cgatagaagt gattcgagcc cggaacatct      2820
     tacgccgtac gacccgtaag attggtaatc gatttcagac gggactattg tggcgttttg      2880
     acaacatcga gatgccggat aattttccat tggctcttcg tagacttgag tgtcttgaaa      2940
     gacgaatgaa acaggatgag aagctgaaat tgaacgtaca tcgacaagtg aaggagtatc      3000
     aggataaagg ctatgctcat gcagctacag ncgangagtt agccaacgct gatccnaaac      3060
     gcatctggta tttacctcta ggaactgtta ctaatccgaa aaaaccagag aaggtgcgat      3120
     tggtttggga tgcggcagct agaacaaatg gaatttcgct gaactcagtt ctaatatccg      3180
     gaccagacct cttgactcca ttacccttcg ttttgttccg atttcgtctt tttccgtacg      3240
     caatatctag cgacataacg gagatgtttc atcaaataga aatcatcccc actgaccgac      3300
     attcacaacg cttcttgttt cgcaatgaac ccaccgacgc cccaacaata tttctgatgg      3360
     atgttgccac tttcggggcg acatgttctc caacaattgc gcaatttgtt aaaaacgaaa      3420
     acgccaaaga gtttgctgaa caatacccta gagcggttga cggaattgtg aaaggccact      3480
     atgtggacga ttatttagac agcttcgcca caatcgagga ggctaaaaag gttgctgctg      3540
     aagttcgaca aattcattcc gagggcggtt tttttctcca caactgggca tcgaatgcac      3600
     cagctatact ggctcatttg ggcgagctac caaaatcagg agcaaagaat ctaactgcgg      3660
     caaaagtgga taacagtgaa cgtgtgttag gcatgcagtg gtcgtcggaa atcgatacgc      3720
     taaccttttc gctgactttc aactcagaaa tacggacaat tattgagtcc aatgcaaggc      3780
     ctactaaaag acagatgttg aaatgcgtaa tgtctatatt tgaccctcta ggcctcgtag      3840
     cttccttttt gattcatggc aaagtattga tgcaggacgt ttggcggact gggatcaaat      3900
     gggacgaaca cgttgcagat aaggtttacg atcaatggca aagatggata gctgtgtttg      3960
     aacggttaaa aactatacaa gtacctcgat gttacttcaa agaagccaac aacgaagtgt      4020
     accgctctac acaaatacat gtttttgtag atgctagcga aaccgcttat gctgcagcag      4080
     tatacttcag aacattacag caagacggtg caccccaatg tagcttagta acggcaaagg      4140
     ccaaagttgc gcctctaaaa tatcattcga taccacgcct cgagctaatg gcggcagtgc      4200
     ttggaactcg tctgctgtcc ttcgtccagc aaggtcatag tcagttaaca gcaccaacct      4260
     gtttcctgtg gtcagactcg aaaaccgtac ttgcttggat tcgatctgac catcgcaggt      4320
     accagcaatt tgttgcatgc cgtgttggtg aaattctaac gtcttctaat gaaagtcagt      4380
     ggcgatgggt gcccagcaaa tacaatgtgg ctgatgaggc cacgaaatgg ggcaaaggac      4440
     cctgttttga acactccagt cggtggtttg tagcgcctag ttttctatac tatccggaaa      4500
     gcgattggcc tcaggaacaa gagaaagtat cagccacgga tgaggaatta cgttcatgtt      4560
     acatacacca aatggttagt cgtgacgtgt tgattgattt cgcacggttc tccaactgga      4620
     accgtcttgt acgtgccgtg gcgtacttca agaggtttgt cagccgttgg cttcgaaaga      4680
     acaactcaat ggtatggaac gctgatccta ctcaggaaga attacacgat gcccaagttt      4740
     tcttatggag aacagcgcaa gccgaaggtt actttgagga agtgacaatt ctggagcgaa      4800
     acaaaagcct gccaaaggag aaacgtgaat gtttgccaaa aactagttcg ctctatcaac      4860
     ttacgccttt tctggacgag gaaggagtgt tacgcattga cgggcgagct agaggtgcaa      4920
     aagcacctgc tatacgcctc aaatgtccga taattttgcc aaaatgtcac aaaattactc      4980
     agctgttgat agacagctat caccaaaaat atctacatgg aaattctgaa acaatcgtta      5040
     acgaaattcg tcaagttttc catataccac atctacgagt tcttgttcgc aaacaatctc      5100
     gccgctgtca gtggtgtctt atctacaaaa caaaacccgt cactccaagg atggcaccct      5160
     tgcctgatgc acgtttgtca ccgttcgtcc gtccattcag ttatgtaggg ttggactact      5220
     tcggccctat cttagtaaaa ctcggacgtt ccaatgtgaa gagatggatt gctgtcttca      5280
     catgccttac aattagagcc gtccatgtcg aagtggcatt cgatctgaca acgcaatctt      5340
     gcattaattg tattcgacga ttcgtttgcc gccgaggagc tccgactgag attcactcag      5400
     ataacgcaac caattttatt ggatcggact ccgtgttgca atctcaaatt cagaaaatca      5460
     accaggaatc ctccgctact tttacgaatg caagtactaa gtgggtattt atacccccct      5520
     catccccaca catgggagga gcatgggaac gattagtgcg ttccataaaa gtggctatga      5580
     tgaatctttc ccaaacacgt aagatggacg acgaagctct tcaaacggtc gtcgtggagg      5640
     cggaagctat agttaactct cgcccattga cctacttgcc tctcgattct gaagaacagg      5700
     aatcattaac acctaatcat ttcctgctct atagctctag tgggattatt cagccctcta      5760
     taccaatcaa cgaatcggcc agagatccca tcaaagccta cgatttgata caacgcaacc      5820
     tcgatcattt ctggatccga tggacccaag agtatcttcc aactctaact aggcgaacaa      5880
     aatggtttgc tgaaactaaa ccagttgaag tgggagattt ggttattgtc atcgatgaag      5940
     ctaggaggaa tggatgggtc cgtgggcggg ttcaagaagt attaccagga agggatggta      6000
     ggatacgtcg agccgtagtg caaactgcta atggcttatt ccggcgtgca gtatcgaaac      6060
     ttgcggtgct ggatgttacc agagctggta aagctgagcc agatactcat cgttacgggg      6120
     aggagaatgt tgctacgaga gcaccgcaac tggcaaccct gtccacatca aacgagacca      6180
     agtttacaaa tctttcacgt ccgtcaaagc aagc                                  6214
//
ID   BEL-247_AA-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-247_AA_;
KW   BEL-247_AA-I; BEL-247_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-485
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2503-2503 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 485 BP; 167 A; 70 C; 78 G; 170 T; 0 other;
     tgtcatctaa aaaaaaaact ataaaacgtg tcaggaagct ttaattgagt ggtcatctaa        60
     aaacatatta tttcctagta aatttgtgaa tttaattcca tattaggtac aatgcactaa       120
     atttatatgg ttctttgaat taataattga aatctttata gttaatctgc aattcgaact       180
     gaattcaata tatgcctttc tcggcctaat tacaagaaga gttgctactg gtaggttaga       240
     atctttaaca atgaagtatg aactcctttc acttaaataa atctatcgtt tagtagccag       300
     caagcgatat cgggttgaag attcaaggag acagttaatt cgttgctgca gaacactaat       360
     ttgtaagata tttgtaatat tatatgaaaa ttatgagtta atgttctcct accgttctag       420
     cttgaagctc taaataaatt tctgctgtca agaatagtgt ttgcctatat agttctacga       480
     gaaca                                                                   485
//
ID   BEL-248_AA-I repbase;    DNA;    INV; 5619 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-248_AA_;
KW   BEL-248_AA-LTR; BEL-248_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5619
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2504-2504 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4640-5221] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..5617
FT                 /product="BEL-248_AA-I_1p"
FT                 /translation="MSLRHTPLKSNQQPIMEDAKSVIHQRGQVKGKVTAIS
FT                 NSLERAEDDPSQVSLPLLKVFSKKLETHYAEYIALHKEVLRLVPPNKVDEQ
FT                 DEKLNEFDHLHTEALVRLENLMESLQKDHRVSNVASQHDNSSRIIIQQAPL
FT                 KAPIPTFDGKYENWPRFKAMFEDIVGKGSDPDSIKLHHLEKSLIGAAAGII
FT                 DSKTLADNNYKHAWTILTERYENPRIIIDTHISELLSMKKMNRESYRELRE
FT                 LVDTCSRNIEGLKFMEQPVEDTAGLIINKILVSCLDPTTRKQWERTINHGD
FT                 LPKLDATLSFLKDQCRILERCEVDNPSTAAKSQPGKSVSSNVKPTSVKVHT
FT                 ATSDASNESCSFCGKSHFCYQCPEFRKLSVAARVSKVKESRSCFNCLRRGH
FT                 NSVDCLSKNRCSKCGKRHHSLLHEDGKKSDESVSFTPASAQKPTDVGQKPV
FT                 IDSPQSSSTDSVQSTTVSSSCSQNVELPNVLLLTAMVHLLDKSGHPVPCRA
FT                 FLDCGAQTNLLSSSMFEKLGFDGFPVNVDIVGVSSTRSKSNCLVNVKLRSL
FT                 CSDYGTTLKCLVTTKITNPLPSKSINIAQWNIPSNVKLADPNFHVPATVDL
FT                 LIGMGHFFELLKIGHIVLAEGLPELRETELGWVIAGEIRDELPTVVNVQQV
FT                 NCVAVESLNETVKRFWEIEEIECNPAPTGEEDECEELFRNTCRRDSSGRYI
FT                 VKLPTRDNINQLSDNRTLALRRFFFLERRLLKDPVLHQLYSNFIEEYKSLG
FT                 HCKDVVEANDPPEMLKYYMPHHAVLRPSSTSTKLRVVFDASAKPPSGVSLN
FT                 EVLKIGPVVQSDLLSILLRFRKHPFVFTADIQKMYRQILVDKEQTALQRIF
FT                 WRSNPTESIKVLELLTVTYGTSAAPYLATRSLVQLCIDEGADFPLAARIIQ
FT                 EDCYVDDVLSGARTIQEAVECRQQLQALLAKGGFPVHKWCANDEAILQDVP
FT                 ESEREKLVLLDDLSANEVMKTLGLTWNPRSDEFLFCQSISSEDTVVTKRQL
FT                 FSEVAKMFDPLGLLAPITVLAKRLMQQTWASKIGWDESLTEDLLADWLHLR
FT                 NSLETVRDIKIPRPIIGLGYESVELHGFADASGIAYGACLYVRSILPNGCC
FT                 VVRLLCSKSKIAPLQELTIPRKELCAAVLLSRLVKKVNSTLQSQFSAICLW
FT                 SDSQIVLSWLQKAPAKLQPFVRNRVAEISNDTGSYKWCYVRSKDNPADIVS
FT                 RGQLPGGLKNNSLWWEGSPFLQSRAYESPVLEEIPDALMPEMKPTSITAMP
FT                 VVNNDDLPLFKKFGSLRKLQRVLAYVQRFIKNCRIKNPEHRVKGDCLSIPE
FT                 LRSALHTIVLVIQRESLSDEIERVENGEPSKRLKTLGPFLLDGALRVGGRI
FT                 QRSKLSFDAKHQYILPRHPLTDLIVRDYHLEHLHIGPSGLLSALRQRFWLL
FT                 GSRSAVRKITRGCVECFRVKPRSATQYMGNLPHTRVTPSAPFEVTGVDYAG
FT                 PFLIKQAGRKSVAIKAYLCVFVCLVTKCLHLELVSDMSTAAFIAALQRFVS
FT                 RRGLVRELHSDNGSNFRGAKAELHELYSMFRENAAVNQIASFCQTKEIDWH
FT                 FIPPDAPEFGGIWEASVKSTKYHLKRILKGTPLTFEELYTLLTQVEAILNS
FT                 RPLFSHSDDPSDGEVITPAHFLIGRPMTAVPEPSYEGLNENRLSKWQHLQQ
FT                 MREHFWRSWVHDYLVSLQPRGKNFVRSPNLRPGIVVLLEDKTLPPQQWKLG
FT                 KITHVYPGEDDLVRVVDVKVGNSVYRRPITKLSILPIEDNNPNGGTLDAGN
FT                 DRPGD"
XX
SQ   Sequence 5619 BP; 1527 A; 1231 C; 1295 G; 1565 T; 1 other;
     tattgtggtc cntcggatcc ggataagtga gtgaaaaagt aatacagtcc actgaagaac        60
     gaactactag tgtgagaagt gaacttttct ctgaagatcg gaagtgatag taagtgaact       120
     gatagtgaaa ctaacaatct gatgatcgaa aaactgaaac taaagccgat ctaaataact       180
     gtgatgactg aaggaaacgt tacgaaccaa aagtgaaaag tgaaaacgaa aagaaaactc       240
     gaaacaaatc aagtgattga attgccacta ctcgtggcga taattccaaa tgtcattgag       300
     acatacaccg ctgaagagca accagcagcc gatcatggag gacgcgaaga gcgtgataca       360
     tcagcgtggg caggtaaagg gtaaggtcac cgcaatttcc aattcgctgg agagagcgga       420
     ggatgaccct tctcaggtga gtctcccgtt actaaaagtt ttttcgaaga agttggaaac       480
     tcactatgct gaatatatcg ctttgcacaa agaagtgctg cggcttgttc ctccgaacaa       540
     agttgatgaa caagacgaaa aattaaatga gtttgatcat cttcatactg aagctcttgt       600
     ccgcttggaa aatttgatgg aatctttgca aaaggatcat cgtgtttcta acgttgcgtc       660
     acaacatgat aactcttcca gaattatcat tcaacaagca ccacttaaag ctcccatccc       720
     aacattcgat gggaaatacg aaaactggcc acgttttaag gcgatgtttg aagacatcgt       780
     cgggaaaggt tctgatcccg attccatcaa attacatcat ttggaaaagt ctttaattgg       840
     tgctgcagcc ggaatcattg attccaagac attggccgat aataactaca aacatgcttg       900
     gacaattttg actgaaagat acgagaaccc tcgcatcatc attgatacac atatttctga       960
     gcttttgagt atgaagaaga tgaacaggga atcctaccgg gaactaaggg agttggttga      1020
     tacgtgttct cggaacattg agggtctcaa attcatggaa caaccagtgg aagacactgc      1080
     tgggttgata atcaacaaaa ttttggtgtc ttgtctagac cctactacgc gtaaacagtg      1140
     ggaacgcact attaaccatg gggatttgcc taagctggat gcaactctgt cgttcttgaa      1200
     ggatcaatgc cgcattttgg agcggtgtga agtggataat ccatctactg ctgctaagtc      1260
     ccaaccaggg aaatccgttt cgtcgaatgt taaacccact agcgtcaagg ttcacactgc      1320
     aacatctgat gctagcaacg agtcgtgcag tttttgtggc aaatcccatt tttgttatca      1380
     atgtcctgag ttccgcaaat tgtctgtggc cgcacgtgtc agcaaggtaa aagaatctcg      1440
     ttcttgtttt aattgtctcc gtcgcggaca caattccgta gattgtttgt ccaaaaaccg      1500
     ttgttcaaaa tgtggcaaac gacatcattc cttgctacat gaagatggga agaagtccga      1560
     tgaaagtgta agctttactc ctgcttctgc tcagaagcca accgatgttg gtcagaagcc      1620
     agttattgat tctcctcagt cttcgagtac tgattctgtt cagtctacta ctgtttcctc      1680
     ctcgtgttct cagaacgtcg aactcccaaa cgtgttattg ttgactgcta tggttcatct      1740
     gctcgacaaa tctggtcatc ccgtgccatg ccgagccttc ctagattgtg gagctcaaac      1800
     aaacctactt tccagctcta tgtttgagaa attaggtttt gacggatttc ctgtaaacgt      1860
     cgatattgtt ggagtcagtt ctactcgcag taagtctaat tgtctggtca acgtgaaact      1920
     tcgctctctg tgcagtgact atggaacgac tctcaagtgc ttggtcacca ccaaaattac      1980
     gaatccctta ccgtccaaat ccatcaacat tgctcaatgg aatattccct ccaatgtcaa      2040
     gctggctgac cctaactttc atgtccctgc tactgtagat ttactgatcg ggatgggtca      2100
     tttcttcgag ttgttgaaaa ttggacacat cgtgcttgct gaaggtcttc ccgaattacg      2160
     agagacagag ttaggatggg tgattgccgg agaaatccgt gatgaattgc caacagttgt      2220
     gaatgttcag caggtaaatt gtgtagctgt cgagtcgctc aatgagacag ttaagcgttt      2280
     ttgggaaatt gaagagattg aatgcaatcc tgcgcccacc ggcgaagagg acgagtgtga      2340
     agagttgttc cgtaacactt gtcggcgcga ctcgagtggt agatacattg tgaaactacc      2400
     aacccgtgac aacatcaacc aactgtctga taatcgaacc ttggcccttc gtcgtttttt      2460
     ctttctggaa agacggttgc tcaaggatcc cgtgctccac cagctgtact ctaatttcat      2520
     tgaagagtac aaatcacttg gtcactgtaa agatgttgtt gaagcaaacg atccccctga      2580
     aatgcttaaa tactacatgc cacatcacgc cgtcctaagg ccgtcgagca caagcactaa      2640
     attaagagta gtgtttgatg cgtcggcaaa gcctccatca ggtgtatcgc tcaatgaggt      2700
     gttgaaaata ggtccagtgg ttcagagtga tttgctatcg atactcttga ggttccgtaa      2760
     acatcccttc gttttcacag ccgatattca aaagatgtat cggcaaatac ttgtcgataa      2820
     ggagcaaact gctctgcaaa gaatattctg gcgctccaat cccactgagt ctattaaggt      2880
     tctcgagttg ttaacagtta cttacggtac atcagctgcc ccttatctag caaccagatc      2940
     gttggttcaa ctatgcatcg atgaaggagc cgattttcct cttgcagcac gcataataca      3000
     ggaagactgt tatgtggatg atgtactgtc tggtgcaagg accattcaag aagcagttga      3060
     atgtcgtcaa cagcttcaag ctctattagc aaagggtggt ttccccgttc ataaatggtg      3120
     tgccaacgat gaagcaattc tacaggatgt ccctgagtca gagcgtgaaa aactagtact      3180
     ccttgatgat ctgtccgcaa atgaagtgat gaagactctc ggattaacat ggaacccgag      3240
     aagcgacgag tttttatttt gtcagtccat ctcttctgaa gatacagtcg taacaaaacg      3300
     tcagctgttt tccgaagtcg cgaaaatgtt tgatccgtta ggtctactcg cacctattac      3360
     cgttcttgct aagcgtctga tgcaacaaac gtgggcttcc aaaattggtt gggatgagtc      3420
     tctgactgag gatctcttag ctgattggtt gcaccttcga aattccctcg aaaccgtccg      3480
     tgacatcaaa attccaagac cgatcattgg cttgggctac gagtctgttg agctacatgg      3540
     cttcgcggac gcttctggca tagcgtacgg agcttgccta tatgttcgca gcattcttcc      3600
     aaacggttgt tgtgtcgtta gactgttgtg tagcaaatct aaaatcgccc cactccaaga      3660
     gttaacaatt cctcgaaaag aattatgcgc agccgtactg ctgtctaggt tggtaaaaaa      3720
     ggtcaattcg actttgcaaa gccagttctc cgccatatgc ctttggtcgg acagtcagat      3780
     tgtcctctcg tggttgcaaa aagcaccagc taaattgcag cctttcgttc gaaaccgtgt      3840
     cgccgaaata tcaaacgata ctggttctta taaatggtgt tacgttcggt ccaaagacaa      3900
     tccggcagat atcgtctccc gtggccaact gccaggtggt ttaaagaaca actcgttgtg      3960
     gtgggaagga tcaccattcc tccaatcaag ggcttacgaa tcacctgttc ttgaagagat      4020
     tcctgatgct ttgatgcctg aaatgaaacc cacgtctatc acggcgatgc cggtggtgaa      4080
     taatgatgat cttccacttt tcaagaaatt cggttctctt cgtaaactgc agagagttct      4140
     cgcctatgtg cagcggttta tcaaaaattg ccgtatcaag aatccagaac atcgtgtcaa      4200
     aggtgattgt ctttctattc ccgagcttcg atctgcactc catacaattg tgttggtgat      4260
     tcagcgagaa tctttgtcgg atgaaatcga aagagtcgaa aatggggaac cgtctaaaag      4320
     gttaaaaaca cttggaccgt ttttgctcga tggagctttg cgagtgggtg gtcgtatcca      4380
     aagatctaag ttatcgttcg atgccaaaca tcaatatatc ttgccaagac atccactcac      4440
     tgatttgatt gtacgagatt accatctgga gcacttgcac attgggccat ctggccttct      4500
     gtctgccctt cgtcaacggt tttggctatt gggttctcgt tccgctgtga ggaaaattac      4560
     aagggggtgt gtagagtgct ttcgggtaaa accacgaagt gcaacgcagt acatgggcaa      4620
     cttgccgcat acccgcgtaa cgccttccgc tccatttgag gtaacgggcg ttgactacgc      4680
     gggccctttc ctaataaaac aggctggccg aaagtcagtt gcgattaagg catatctatg      4740
     tgtgttcgtt tgcctggtga ccaaatgtct tcatttggag cttgtctcag atatgtctac      4800
     ggctgccttt atcgcagctt tgcagagatt tgttagtcgt cgagggctag tccgtgaact      4860
     tcattccgac aatggcagca attttcgtgg ggccaaagct gagcttcatg agttgtattc      4920
     catgtttcgt gagaatgccg cggtaaatca aatcgcatct ttttgtcaga caaaggaaat      4980
     tgactggcat ttcatacctc ctgacgcccc tgaatttggt ggtatttggg aggcttcagt      5040
     taaaagcaca aaatatcact tgaagcgcat tctcaaagga acgccgctaa cctttgaaga      5100
     actatacacc ttgttaacac aggtagaggc gattctgaat tcgcgtccgc tattttcgca      5160
     ttcggatgac ccttccgatg gtgaggttat cactcccgct cattttctta ttggccgtcc      5220
     aatgacggcc gttcctgagc cctcttacga gggtttgaat gagaatcgtc tgtcgaaatg      5280
     gcaacactta caacaaatgc gggaacattt ttggaggtca tgggtacatg attatctggt      5340
     tagtcttcag ccgagaggaa agaattttgt tcgctctcca aaccttcgtc ctggaattgt      5400
     agttcttctg gaggataaga ctcttccacc ccaacaatgg aaattgggaa aaattactca      5460
     tgtctatccc ggggaagacg atcttgtgag agtggttgat gttaaagtgg ggaattctgt      5520
     atacagacga ccgataacta agctttcaat tcttccaatt gaagataaca atccaaatgg      5580
     ggggactctg gatgctggta acgatcgccc gggggatga                             5619
//
ID   BEL-248_AA-LTR repbase;    DNA;    INV; 935 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-248_AA_;
KW   BEL-248_AA-I; BEL-248_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-935
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2505-2505 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 935 BP; 219 A; 228 C; 243 G; 245 T; 0 other;
     tgttcgcaac agcgaaagat cgtaagcgac gcacaccgat gtttccgtgc ttcgcccaga        60
     acacaatcgg aggatgccaa cccgaacgca agagaacgcc gtgatgagtg ggagaaagta       120
     cagtcgaccg ttttcgtgcc gtaaacctcg tggccaatca gtggcaagga tgctccgacc       180
     aatcagaaca tttgcaacat tcaatccaga ctataaaagt agatgtaaga aaagctgtag       240
     gctcataagt tttttgtaat tcaaccagtg cacaagtaaa aagtgaagtt tgtaaaccag       300
     tgtttttatt cagaagaaga aagtttcttc ccgttcaagt gccaatccag ttccagtgac       360
     gcatcgaggc ttgagtgtcc gattaattgc agtgtttgct cccatcaccc agtgtcgcag       420
     ctcgctacca aaactaatat tcactagctc ttttcagagc taactcaaga gttgtttagg       480
     cgacgctctc cactgggtga atcgtaattt gttctttgca tcggcaccaa gcgttgcgtt       540
     ccatcgttgc atgttggcag tgagccaacg gagtttcatc gtcatcgttg tgtgtgtgcg       600
     cgctggcagt gggccagcac gaacgttgtc ggccattcag cgtcggcaat cctctttcgc       660
     gtgtgtgtgc gcgtggtagt agtgtattac cacagtcgca tcgtcgtcga ccttccagcg       720
     tcgttttcca acagcggcaa gagccgccat tgagtgtgtg tgagtgtgtt tggcagtgag       780
     ccaacacgtc ttcgtcaacg ttatcgtcgg cagtgagccg actgcatcga agcctctcga       840
     gtgtgctcgg gtttccagta gttggcagtg ggccgactga ctgctagctc ggctaccttg       900
     aattcgtcgt gatacatgtt ggcagtgtgc catca                                  935
//
ID   BEL-249_AA-I repbase;    DNA;    INV; 6777 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-249_AA_;
KW   BEL-249_AA-LTR; BEL-249_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6777
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2506-2506 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5821-6378] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(34..2751,2755..6777)
FT                 /product="BEL-249_AA-I_1p"
FT                 /translation="MNRRSAVRQTRSRTRARAEGAANLQNDDVHRENASVK
FT                 SSEANFEPSIVDEERANERDCGACDRPNKAEWFMVQCEGCKKWYHFSCAGV
FT                 TQKTVHSKSFCCAICISRTRISQPNSIAGRTSSSSSRRARLAREMQRLEEE
FT                 RLLQEKIQQATLENLEREKEYITRKYELLEQQDEADTSSLNSGRSNRTSRV
FT                 KEWVHEQNSAVGSASDIAEIPGVSVESSHTHAGTSVDRNNVKITSTPLKTG
FT                 VGAIHANQKSDDSHLTSSIDGVADSDMEKTFGSITIDDNVVKAAGRENILP
FT                 LVDVQPLANLLEYTAPKIPEKGARPKNTLPLYEKWRRDTEDLRKEHDRQQK
FT                 QHEQEIEMRRKRELDLISKINELKGSKEEQFELQCRREADLVRQLRRWEEE
FT                 DAEFKRQRQKELEQRDVELQRLRGIERAFLEMQMSAQQKQIGTSDPAVRAQ
FT                 AVVQLPDLPIPEENLVGMRLQDPTQVREGNNIRRQNAPSVSETHLSANPLR
FT                 PMNYSPLSPPHHQNEMDELSMITPVGGRSQYSTPLNQSVPINAPYTSTLHE
FT                 PSSDLPVFRSHAMPQNEPRQNFVQPNPHFANYGPLQAQYGPTQQQVVARQV
FT                 ISRELPSFTGDPIEWPLFISNYLHSTNACGYSDSENLLRLQRCLKGAAKEA
FT                 VSSLLLHPSSVPQIISTLQTLYGRPEQIVNNMVSKVRNTPAPRADRLDTWV
FT                 AFGLMVQNLCGHLKAVGLENHLSNPILLQELVEKLPPTIKFNWALYQQSLP
FT                 IVDLRSFGDYMEKVAAATSSVATPLISQPKTNKDDRSKCKDKAFVNAHAAS
FT                 NQRKAESDVSRLEYTQPKYAPTKRAEPPTTCPTCGGGGHQAANCPTFKKLC
FT                 VDARWKEVKEKQLCGRCLTAHSRWPCRGEVCGINGCQRRHHRLLHSDLPVE
FT                 EKPVGETKNATVNVHRQLTSTTLFRVLPVTLYGSNGQIDTYAFLDDGSSVT
FT                 MVDQSIAEALGLEGSTESLCIHWTGGIQKKLCAQQVAVEVSAVDNDKRFKA
FT                 SEVYVVENLGLPEQTMDFQEMEQRFAYLKGLPVKSFTAAVPGLMIGLSNVH
FT                 LLATLKLREGRIGEPIATKTRIGWAVYGTLCGGADQLPHRQMHINGKTSDE
FT                 DLHSCVQDFFALESLGISVVPEMKSAEEQRAWKILEETTNRTDSGRFQTGL
FT                 LWKKDEVQFPDSEPMAKKRLMCLEKRLSKNPELYDTVRRQIAEMQEKGYTH
FT                 KATTAELAAFERERLWFLPLGVVLNQKKPGKVRLIWDAAAKVNGVSLNTEL
FT                 LSGPDLLAPLLGVMFGFREREVAICADIMEMFHQILIRKEDRSAQLYKWRH
FT                 SPDLPMENMVMDVAIFGATCSPAHSQFVKNKNADEHEISYPRAAKAIKKKH
FT                 YVDDYLDSFDTAQEASEIALEVAKIHAAGGFFIRNWISNDRTVLERIGESN
FT                 PTAVKSFIGEGKAERLLGIVWLPDEDVFTFSLNFHQGIRELIEGILVPTKR
FT                 EMLRVVMSIYDPLGIVSTFVIHGKILIQDVWRARIDWDQKVPLDVFSRWKL
FT                 WLAVLLEMSSVRIPRCYFPGYDPDSYRSLQLHIFVDASEQAFAACAYFRIV
FT                 DRGSVRCCLVASKTKVAPLKPLSIPRLELMAAVIGARLKKTIMENHSLEIR
FT                 QTFIHSDAGTVLSWIRADPRRYRQFVAFRVSEILSLTTVEEWRWVPTKLNV
FT                 ADEATKWGRGPSFEPNSRIISGPLFLYDDQQNWPKDCRSNVDGTEEELRPA
FT                 YIFKHSLTKPFINFENFSKWERLLRCIAYVHRFVANLKQRYKRGPATQGEL
FT                 LMVELQQAERTLWKLVQSDAFPDEVATLKYNTQTDITKLKRLEKRSPLLKL
FT                 TPVMDTDGILRIDGRITHSDYAAYDAKYPIILAKEHVVTTLLLDWYHRKFR
FT                 HANNETVVNEVRQRFHVPRLRVRVRAARKRCTRCKVYKAVPAAPKMGPLPQ
FT                 ARLTPFKRPFTYTGVDYFGPYFIKVGRSAVKRWVALFTCLVTRAIHLEVVS
FT                 SLSTDSCKKAIRRFIARRGAPVEFYSDRGTNFVGASRELVEEIKRINVQLS
FT                 STFTDHQTQWKFNPPAAPHMGGCWERMVRSVKIAMGVLPFERKLDEESLAT
FT                 FLAEAEHMINSRPLTFVPIESDDDESLTPNHFLMLNSSGVKQPEKTPVDEG
FT                 MALKGSWNKIQYTLDNFWRRWLREYQPTITRRTKWFHDVRHVQEGDLVVIM
FT                 DEGVRNRWLRGRIVRTYPGRDGVPRRADVRIPDGSVMRDRPVTKSALLDVR
FT                 SKDDAEPEVLATRGGGC"
XX
SQ   Sequence 6777 BP; 1911 A; 1559 C; 1809 G; 1493 T; 5 other;
     gaaaactaaa gaacttacgg attgtgaggt accatgaatc ggagatcggc tgtacggcag        60
     acgcggtcgc ggactcgagc tagagcagaa ggtgcggcta acctccaaaa tgatgacgtt       120
     catcgtgaga atgcatccgt gaagtcatcg gaggccaatt tcgaaccatc catagttgac       180
     gaggagcgtg cgaatgaaag ggattgtggt gcctgcgatc gtccaaacaa ggccgagtgg       240
     ttcatggtgc agtgcgaagg ttgtaagaag tggtatcact tttcctgcgc cggagtgacc       300
     cagaaaacag ttcactcgaa gtcgttttgt tgtgcgatct gtatttcccg cactcgaatc       360
     tctcaaccga actcaattgc tggacggacg agctcatcta gctcacgtag agcaagattg       420
     gctcgtgaga tgcagcgcct cgaggaagaa cgccttttgc aagaaaagat ccagcaagct       480
     accctagaga atctggagcg cgagaaggag tacattacac gaaaatacga acttctggaa       540
     cagcaggatg aagctgatac gtcaagcttg aatagtgggc ggtccaatcg aacaagcagg       600
     gtgaaggaat gggtccatga gcagaacagt gctgtcggat ctgccagcga tattgctgag       660
     atacctggtg taagtgttga gagcagtcac acacacgctg gaacttcagt tgaccggaac       720
     aacgtgaaga ttacgtccac tccattgaag acgggggttg gtgctatcca cgcaaatcag       780
     aagagcgatg atagtcatct gacgtccagc atcgatggcg tcgctgacag cgacatggag       840
     aagacctttg gaagcataac catcgatgat aacgtagtga aagcagccgg cagagagaac       900
     atcttgccgc tagtagatgt acagcctcta gcgaatctac tggaatacac cgcacccaaa       960
     atccctgaga aaggcgctcg tccaaagaat acgttacctt tgtacgagaa gtggcggaga      1020
     gataccgaag accttcggaa agaacacgat cggcagcaga aacagcacga acaggaaatc      1080
     gagatgcgtc gcaagcgtga actggacttg attagtaaaa tcaacgagct gaaaggcagc      1140
     aaagaagagc agttcgaatt acagtgtcgg cgggaagccg acctcgtgcg tcaactgcgg      1200
     cgttgggaag aagaagatgc agagttcaag agacagcggc agaaagaact ggaacaacgg      1260
     gacgtggagt tacaacgntt gagagggatt gagcgagcgt tcctagaaat gcagatgtcg      1320
     gcacagcaga agcaaatcgg cacgagtgac ccagcggttc gtgcgcaggc ggtagtccag      1380
     ctaccggatc taccaatacc ggaagagaac ctcgtcggaa tgagattgca agaccccacg      1440
     caagtaagag aaggtaacaa tattcgtcgt cagaatgcac cctcggtaag tgaaacccat      1500
     ctatctgcca atcccttgcg accgatgaac tactcccctc taagtccccc tcaccaccaa      1560
     aatgaaatgg atgagctttc gatgatcacc ccagtgggag ggcgatctca atactcgact      1620
     cccttaaacc aatcagtgcc aataaatgcc ccttatacat ccaccctaca tgaaccatca      1680
     tcagatttgc ccgttttccg ctcccatgcc atgccccaaa atgaacctcg acagaatttc      1740
     gttcagccaa acccccattt cgcgaactac ggaccactac aggctcaata tggcccaacg      1800
     cagcaacaag ttgtggcacg acaagtaatc tctagagaac ttccttcgtt cactggggac      1860
     ccaatcgagt ggccgctgtt catcagtaac tacctacatt caacaaacgc atgtgggtac      1920
     tcggactccg aaaatctatt gcgacttcag cggtgcctca aaggcgcagc taaggaggca      1980
     gtcagcagtc ttcttctgca tccgtcatca gttcctcaga tcatttcgac attgcaaact      2040
     ttgtatgggc gacctgagca aatcgtgaac aacatggttt cgaaggttcg caatactcct      2100
     gccccgagag cagatcgttt ggacacgtgg gtcgcctttg gcttaatggt gcagaacttg      2160
     tgcggtcatc ttaaagcggt cggactggag aaccatttgt ccaatcctat cctgttgcaa      2220
     gagctagtgg aaaagctgcc tcctactatc aaatttaact gggcacttta ccaacaaagc      2280
     ctgcccattg tggatctccg cagtttcggc gattacatgg agaaggttgc tgctgccact      2340
     agtagcgttg ctacgcctct aattagccaa ccgaagacga acaaggatga tcgatctaag      2400
     tgcaaggata aggcctttgt gaatgcccat gcagcatcaa atcaaaggaa agccgaatcg      2460
     gatgtttctc gtctagaata cacgcaaccc aagtacgctc caacaaagag agcggagcca      2520
     ccaacgacct gcccaacttg tggcggagga ggtcatcagg cagcgaactg tccgacattc      2580
     aaaaaactgt gtgttgatgc tcgctggaaa gaagtaaagg agaaacaact ttgcggccgt      2640
     tgcttgacgg cacacagtcg ttggccatgt cgcggagaag tttgtggaat aaatggatgc      2700
     cagagacgac accatcggtt gctgcacagc gacttgcctg tcgaagagaa aangcctgtt      2760
     ggagaaacga aaaatgctac cgtcaatgtt catcgccagc ttacgtcgac aacactcttt      2820
     cgggtgctcc ctgtgacgct ttatgggagc aatggacaaa tcgacactta cgcctttctg      2880
     gacgacggtt cttccgttac tatggtggat caatcgatag cggaagcact tgggcttgaa      2940
     ggaagcaccg aaagtttgtg tatccactgg accggtggaa tccagaagaa attgtgcgcg      3000
     cagcaggtag cggttgaagt ttcagcagtt gacaatgaca agcggttcaa ggcatcggaa      3060
     gtttacgtag tcgaaaatct gggcttaccc gaacaaacaa tggatttcca ggaaatggaa      3120
     caacgtttcg cctacctcaa gggactacct gtaaaaagtt ttacagcagc tgttccaggg      3180
     ctgatgatag gattgagcaa cgtacacttg ctagccactc taaagctacg cgaaggacgt      3240
     atcggcgagc caattgccac aaaaacgcgt attggatggg ccgtttacgg aactctatgt      3300
     gggggagccg atcagctgcc gcatcgtcaa atgcacatca acgggaaaac atctgatgaa      3360
     gatctgcact cctgtgtaca ggattttttt gcgttagaaa gcctggggat ttctgtagta      3420
     ccggaaatga aatcggctga agaacaacgg gcctggaaaa tccttgagga aactacaaac      3480
     cgcaccgata gcggaagatt tcaaacaggc ttgttgtgga aaaaggatga agttcaattt      3540
     ccagatagcg aaccaatggc taaaaagcgg ttaatgtgcc tcgaaaagcg cctcagtaag      3600
     aacccggagt tgtacgacac cgtccgtcga caaatagctg aaatgcagga gaaaggctat      3660
     acacataaag ctaccactgc ggagttggca gctttcgagc gtgaacgtct gtggtttctc      3720
     ccactggggg tagtacttaa ccagaagaaa ccaggaaaag taagactcat ctgggatgcg      3780
     gcagccaagg tcaacggtgt ttcattgaat acggagttgt tgagcggccc ggatctactc      3840
     gcgccgttac tgggagtgat gtttggattt cgtgagagag aggtggctat atgtgcggat      3900
     atcatggaaa tgttccacca aatattaatt cggaaggagg atcgcagcgc acaattgtac      3960
     aagtggagac actcgccaga tctaccgatg gaaaacatgg taatggacgt tgcaatcttc      4020
     ggtgcgacgt gttctccggc gcactcgcag ttcgtgaaga acaagaatgc cgacgaacac      4080
     gagatctcgt atcccagagc agcaaaagcg attaagaaga aacattacgt cgatgattat      4140
     ctcgatagct tcgatacagc gcaagaagca tcggagatag cgctggaagt agctaagata      4200
     cacgccgctg gaggtttctt tatccgaaac tggatttcga acgatcgcac cgtattggag      4260
     agaatcgggg aatctaaccc gacagcagtg aaaagtttca tcggagaagg caaagctgaa      4320
     cgccttttgg gaatagtctg gctaccagat gaggatgttt ttaccttttc gctgaacttt      4380
     caccaaggca ttcgtgaact gattgaaggc attctggtgc caactaagcg agaaatgcta      4440
     cgtgtcgtaa tgagcatcta cgacccgctg ggcatcgttt cgactttcgt tatccacggg      4500
     aagattttaa ttcaagacgt ttggagggct cggatcgatt gggatcaaaa ggttcctttg      4560
     gatgtattca gtcgatggaa gttgtggtta gccgtactcc tcgaaatgag cagcgtcagg      4620
     attcccagat gttactttcc gggatacgac ccggacagct atcgctcgct gcaactacac      4680
     attttcgtag acgcgagtga acaggccttc gcggcttgtg cctatttccg catcgtcgat      4740
     agaggaagtg tccgttgctg cctggttgca tcaaaaacga aggtagcacc gcttaaaccg      4800
     ctatcgattc cacgcctcga gttgatggca gcagtgatag gtgctcgttt gaagaaaaca      4860
     ataatggaga atcattcctt ggagattcga cagacgttca tccacagcga tgctggaaca      4920
     gtcctgtctt ggatccgggc tgatccacgt cgttatcgcc aatttgttgc gtttcgcgtg      4980
     agtgaaattt tgagtttgac gacggtggaa gaatggcgct gggtcccaac aaagcttaat      5040
     gtggccgatg aggccacgaa gtggggaaga ggtccatcgt tcgaaccaaa tagccgaatc      5100
     atttctggac cgctgttcct gtacgacgat caacagaatt ggccgaagga ttgccgatcc      5160
     aacgttgatg gaaccgaaga agaactcagg cctgcgtaca ttttcaaaca ttcgctcaca      5220
     aaacctttca taaatttcga aaacttctcg aagtgggaac gactactacg gtgcatcgcg      5280
     tacgtacatc gtttcgtagc taacttgaag caacgctaca aaagaggacc agcaacgcaa      5340
     ggagaacttc tgatggtaga actgcagcaa gcggaacgta ccctttggaa actggtgcag      5400
     tctgatgcat ttccggacga ggtagctacc ttgaagtaca acacgcaaac agacataacg      5460
     aagctgaaga gattggagaa aagaagccca ttactgaaat tgacgccggt gatggacaca      5520
     gatgggattc ttcgtataga tggtcgtata actcacagtg actatgcagc ctacgacgca      5580
     aaatatccca tcattctggc aaaagaacac gtcgttacaa cattgctatt ggattggtac      5640
     catcgcaaat tccgtcatgc gaacaacgag accgtggtca acgaagttcg tcagagattc      5700
     cacgtaccac gcttaagagt tcgagttcga gcagcgagaa agagatgcac acggtgcaag      5760
     gtgtataaag ccgtacccgc agcaccnaaa atgggtccgt taccacaagc gagactgaca      5820
     ccctttaagc gaccgtttac gtataccgga gttgactatt ttgggccgta tttcatcaaa      5880
     gtcggacgat ctgcggtgaa aagatgggtc gctctgttta cgtgtttggt aacacgggcg      5940
     attcatttgg aggtcgtgag tagtttgtca actgactcgt gcaagaaggc gatacggagg      6000
     tttatcgcgc gcaggggagc gccagtggag ttctactcgg accgtggaac caacttcgtc      6060
     ggggccagtc gcgaattggt agaggaaatc aagcgtatca acgttcaact tagcagcacc      6120
     ttcacggatc atcagacgca gtggaagttt aacccacctg ctgctccaca catggggggc      6180
     tgctgggaaa ggatggtccg gtctgtcaaa atagctatgg gtgtgctgcc tttcgaacgg      6240
     aaactagacg aagagtcttt ggcaactttt ctagctgaag ccgagcacat gataaactct      6300
     cgtcccttga cctttgtgcc gattgaaagc gacgatgacg aatcgcttac accgaaccac      6360
     tttttaatgt tgaactcgag tggggtgaag caaccagaga agacacctgt ggatgaaggc      6420
     atggcactga agggaagttg gaacaaaata cagtacacgt tggacaactt ctggcggcga      6480
     tggttgcgag agtatcagcc gacnataacg cgacgaacta aatggttcca tgatgttcgt      6540
     catgttcagg agggtgactt ggttgtgatc atggatgagg gggtgagaaa tagatggcta      6600
     aggggtcgca tagttcggac atatccggga agagacggtg tnccaagacg tgcagacgtg      6660
     cgaattccag atggatcggt tatgagggat cgaccagtaa ccaagtcggc tttgctggac      6720
     gttcgttcaa aggatgacgc cgaaccggaa gttctagcga cacgtggggg aggatgt         6777
//
ID   BEL-249_AA-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-249_AA_;
KW   BEL-249_AA-I; BEL-249_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-408
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2507-2507 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 408 BP; 135 A; 67 C; 82 G; 124 T; 0 other;
     tgaggacagc gaatacccct cggctcggtg caatgtaacc ccttatgggg gcgagataag        60
     agatgtcaat ttgaagttga cgttaatgaa ttgtcgggca ggatgatagg caaaactgaa       120
     gtagctgtaa acaaattgta ctgtagtgaa gcagaagtta tttctcgaag taaattaatt       180
     gaattccccc ttgataacat ttaatgcaac aattatttag ttttagacac cctacatatt       240
     ctacatttat attgttttct gttagttgtt gtatattatt cggacactaa gttgtaagta       300
     actgaattta actggatttg cacttaacta aagaataaat attgcagctt tagcgatact       360
     ctgcggaaaa aagcgagttg ctcaaagaca tccgaaataa cgccaaca                    408
//
ID   BEL-24_AA-I repbase;    DNA;    INV; 5672 BP.
XX
AC   supercont1.15;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AA_;
KW   BEL-24_AA-LTR; BEL-24_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5672
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.15; Positions 2074885 2080556.
XX
CC   'CTAGA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           292..2130
FT                 /product="BEL-24_AA-I_1p"
FT                 /translation="MSLVHSPKKTRSGVQHGDTSEEERENQNRLACAKESL
FT                 IRKIGVLSRQRSKAADKIKRIGGILIDDDADVSVPKLKVYARNVDAIYSEF
FT                 NDFHNQLAEILPDDAMDDHDQAYTRFEKDYHEVSTYIEEMLMDATKKETPD
FT                 IKPQVIVQQQPLKAPIPTFDGRYENWPKFKAMFIDIMDRSNDTDAIKLYHL
FT                 DKALVGAAAGILDARTMNENNYAQAWNILTERFENPRVIINTHIRGLLSLK
FT                 KMTKESYRELRQLLDDCSGHIESLRYLKQDLLGVSELIVVHLLASALDAST
FT                 RKQWEATIVRGTLPKYDDMMKFLKQQCNILENCETSAQVPPPRAERSNVKA
FT                 ADQSKSSPRFNPKILTANSCGSASSEECDFCGEFHKNFQCEQLKNMSVPER
FT                 VEKARSLGMCFNCLRKGHRLKDCPSDRKCLKCRQRHHTQLHDDTRFKSQQP
FT                 ESKMHEPTASSESTPRPAVKEVQASTSSAPTSQGSHSVTSSCSIQATPTKK
FT                 TVLLLTAVVHVYDSQGKPHCCRVLLDCGSQVNLITKKMAEAIGAKISSANV
FT                 KISGVNNRTTTSMEKAIVKFRSRYSDYRATVECVITPAVTGRIPSTNIDVS
FT                 DWRIQTSMCLKRLTC"
FT   CDS           2127..5648
FT                 /product="BEL-24_AA-I_2p"
FT                 /translation="MLIGNELFFKIIKSGQYQLAEHLPELRDTHLGWVFTG
FT                 ELEEVFHQGPSYSHTITVENVYEALQRFWSVEEVADQDPVTSEEVECEKHF
FT                 RYTHERSDEGRFVVQLPLKENASQLSDCRSVALKRFHLLEQRLVRNPCLRE
FT                 QYVQFIREYEQLGHCKQVSECKDSPNVQKCYLPHHAVIRPDSSSTKCRVVF
FT                 DASAKPSQNSLSLNDVLKVGGTVQSDILDIVLRFRKHKYAFTADISKMYRQ
FT                 IMVTEMHQPLQRFFWRESPEQPLKVYQLTTVTYGTASAPFLATRCLVQLAE
FT                 DGKEKCPLGASTVREDFYVDDVLSGDDTLSAAIERQQQVKDLLASAGFPIH
FT                 KWCSNSEQLLERIPVGDRETPKVLEEQGINTVIKVLGILWDPHSDDFLFSI
FT                 KSPNLNSESKANTKRTILSEIAKLYDPLGFLSPIIVLAKLLLQQLWRSKVG
FT                 WDEPVEDEISQQWMQLKKSLEATNQVHIPRRVLIDDAECNELHGFADASMS
FT                 AYGACVFIRSIFNESAQLQLLCSKSKVAPLKAVTIPRLELCAALLLARLVN
FT                 KVLQSIQMSFHRVVLWSDSQIVLAWLRKSPDQLQVFVRNRVAAIREETEDF
FT                 EWMYVRSESNPADIVSRGQMPIELVKNELWWHGPDFLKKVNIENKPPEEII
FT                 EDIPELRVAPTVLPVIEEEQLEVFSKYSSYRKLQRVIALVLRFANNCKKKD
FT                 SASRVNKPIPTVAELRLAMNIIVKVIQREELSDEIARVESGEQCRKLGSLG
FT                 PILVNGVLRVGGRLEHSKLPYGEKHPIILPCKSTIVRMLIRALHEEHLHLG
FT                 PTGLVHVIRREFWLINAAATVRGVTRSCVKCFKVKPIDTSQYMGNLPSCRV
FT                 THAPPFSVTGVDYAGPFHIKQGLRKVTTVKGYVAVFVCMVTRAVHLELVSD
FT                 MTTSAFIAALQRFVSRRGIVHQLHSDNGTNFRGAHHELNQLYQAFKQEQDT
FT                 HQIESFCVSKGIEWQFIPADAPEFGGIWEAAVKSMKSHLKRIIGNASLNFE
FT                 QYVTVLAEIEAILNSRPLFVTSSRSDSPEVITPAHYLIGRPLTAIPEPSYE
FT                 DIQANRLDKWQHLQMLREHFWKAWSREYLSSLQSRKKNQKLKSNVSPGMIV
FT                 LVHNRNLPPLQWKLGVVTKTFPGVDGLIRAVDVYSDKSTFRRPINKLSVLP
FT                 IEDNKAYFGQSQVLK"
XX
SQ   Sequence 5672 BP; 1554 A; 1359 C; 1425 G; 1334 T; 0 other;
     ttggtccttc gagccggata tgaaccagcg acctatggat atacagtcca cattgctcgt        60
     tcccccagac ggaacattgg tccttcgagc cggatctgaa ccagcgaccg tcccccgaaa       120
     aagtgttaca gtccactttg ctcgttcccc cagacggaac attggtcctt cgagccggat       180
     ccgtgatccg gtagtgattt agtgtgtgtg atcctccttg gactgagtta ctggtgaaaa       240
     gagagacaga ctctgaaaaa gtgaagttga cgaaaccgga agtgttccaa aatgtctctc       300
     gtgcatagcc ctaaaaagac acgttcggga gtgcagcacg gcgacacaag tgaagaagaa       360
     agagaaaatc agaatcgttt ggcctgcgca aaggaatcgc tgatccggaa gattggtgtc       420
     ctgagccgtc agcgttccaa ggcagccgat aaaataaagc ggatcggagg aattctgatc       480
     gacgacgatg ccgacgtgtc cgtaccgaag ctgaaggtgt atgctagaaa cgtggatgcc       540
     atctacagtg agtttaacga tttccacaac caacttgctg agatcctgcc ggatgatgca       600
     atggatgacc acgatcaagc gtacaccaga ttcgagaaag attaccacga agtgtcgacg       660
     tacatcgaag agatgctgat ggatgcaacg aaaaaggaaa cacctgacat caagccccaa       720
     gtgatcgtcc agcagcagcc gctaaaagca ccgataccaa cgttcgatgg ccgatacgag       780
     aattggccaa aattcaaggc gatgttcata gacattatgg acaggtccaa tgatactgat       840
     gccatcaaat tgtatcactt ggacaaggct ctcgtcggag cagcagcagg aatcctcgat       900
     gcccgaacaa tgaacgagaa caactacgct caggcgtgga acattctcac agagcgattc       960
     gaaaatcccc gtgtcatcat caacacccac atccgcggcc tgctatcctt gaagaagatg      1020
     acgaaggagt cctatcgtga attgcgccag ttattagacg attgttccgg gcatatcgaa      1080
     agcctacgtt atctgaagca ggacctccta ggcgtgtcgg aactgatcgt ggtgcatttg      1140
     cttgcatcag ccttggatgc ctctaccagg aagcagtggg aagcaaccat cgttcgagga      1200
     acgcttccga aatacgacga catgatgaag ttcctaaagc agcagtgtaa catcctggag      1260
     aattgcgaaa catcagctca agtccctcct cctcgtgccg aaagatcgaa cgtgaaagcc      1320
     gcagaccagt cgaagtcaag tccgagattc aatccgaaaa tcctaaccgc taatagctgc      1380
     ggcagtgctt caagtgaaga atgcgacttc tgcggcgaat tccacaagaa cttccagtgt      1440
     gagcagctga aaaacatgag cgtacctgag cgagtcgaga aagcacgttc cttaggcatg      1500
     tgcttcaatt gcttgaggaa gggtcatcgg ctgaaggatt gtccatccga tagaaagtgc      1560
     ttgaagtgcc gccaacgtca tcatactcag cttcacgacg atacaagatt caagtcccaa      1620
     cagcctgaaa gcaagatgca tgagccgaca gcttcatcgg agtccacacc gagaccagct      1680
     gtgaaagaag ttcaagcaag cacatccagt gcacccacat cgcaaggctc acacagcgtg      1740
     acgtcatcgt gttccatcca agcaactcca accaagaaaa ccgtcctcct tttaacagca      1800
     gtggtgcacg tttacgattc ccaaggtaag cctcactgtt gtcgagtcct gctagactgc      1860
     gggtcccagg tgaacctcat aacgaagaag atggccgaag ccatcggagc aaaaatttca      1920
     tctgcaaatg tgaagatttc cggcgtcaac aatcgtacga caaccagtat ggagaaagcc      1980
     atcgttaagt tccgatcccg ttatagtgat taccgtgcca cggtagagtg tgttatcacc      2040
     ccagcagtga ctggtagaat tccgagtacc aacatcgatg tgtccgattg gcggatccag      2100
     acttcaatgt gcctcaagag attgacatgc tgattggcaa tgaactcttc ttcaagatta      2160
     tcaagtccgg tcagtaccag ttggcagagc atctaccaga gctgcgtgat actcatcttg      2220
     gttgggtatt cacgggagag ctagaagaag tgttccatca aggtccatcg tattcccaca      2280
     cgatcaccgt cgaaaacgtg tacgaagctc tgcaacgttt ttggagcgta gaagaagtag      2340
     ctgatcaaga tcctgtgaca tccgaagaag tagagtgtga gaagcatttc cgctacacac      2400
     atgaacgcag cgacgaaggg cgattcgttg tgcaacttcc tttgaaagaa aacgcctccc      2460
     agctgagtga ctgcaggtcg gtcgctttaa agagattcca cctcctcgaa caacgcctcg      2520
     ttcgaaatcc gtgtctccgt gagcagtacg tgcaattcat cagggagtat gaacagctcg      2580
     gccactgcaa gcaagtaagt gaatgcaaag attctcccaa cgtccaaaag tgctatctac      2640
     cgcaccacgc tgtcatccgt ccagatagtt cctcgacgaa gtgtcgagta gtgttcgatg      2700
     cttctgcaaa gccatcgcag aacagccttt ccctcaacga tgtccttaag gtaggtggta      2760
     ctgtccaatc cgatattctc gatattgtcc tgcgattccg caagcacaaa tatgctttca      2820
     cggctgatat aagcaaaatg tatcgccaaa tcatggttac tgagatgcat cagccactcc      2880
     aacgattttt ttggagagag agtcccgaac aaccgttgaa agtatatcag ctaactaccg      2940
     ttacatacgg cacagcgagt gcaccctttc ttgcaactcg ctgcctggtt cagttggctg      3000
     aagatggcaa agagaaatgt cccctgggag cgtcaactgt gagggaagac ttttacgttg      3060
     acgatgtgtt gtctggcgac gatacgttga gtgcagcaat tgaacgacaa cagcaagtta      3120
     aggatttgct ggccagcgct ggtttcccga tccataagtg gtgttccaat tccgagcagt      3180
     tgctggaacg cattccagta ggtgatcgtg aaactcccaa ggtcctcgaa gagcaaggta      3240
     tcaacaccgt catcaaagtg cttggtattt tgtgggatcc tcacagcgat gattttctgt      3300
     tctcgatcaa atctccaaat ttgaactccg aatccaaagc caataccaag cgaacgatat      3360
     tgtccgaaat tgccaagctg tatgacccac ttggattctt gtcgcccata attgttctcg      3420
     ccaagttact attgcaacag ttgtggcgta gcaaggtggg ctgggatgag cctgtcgagg      3480
     acgaaataag ccaacaatgg atgcagctga agaaatccct tgaagcaacg aaccaggtgc      3540
     acattccaag gcgtgtgctg attgatgatg ctgaatgcaa cgagcttcat ggttttgctg      3600
     acgcttcgat gtcagcctat ggagcgtgtg tgttcattcg aagcatattc aacgagtcgg      3660
     cgcaactaca attactctgc agcaaatcca aagtagcccc tttgaaggca gtgacgattc      3720
     cacggctgga attgtgcgcg gcactcctgc ttgcgcgttt ggtgaataag gttctgcagt      3780
     caatccaaat gtcgtttcat cgtgtggtgc tctggtcgga cagtcagatt gttctggctt      3840
     ggttgcgcaa atctcctgac cagcttcaag tgttcgtgcg caatcgtgtt gctgcaatcc      3900
     gagaagaaac agaagatttc gagtggatgt acgtccggtc ggagtccaac ccggctgata      3960
     tagtgtcgcg tgggcaaatg cccatcgaat tagtgaaaaa tgagttatgg tggcatggac      4020
     cagacttttt gaaaaaagtg aacattgaaa ataagccacc agaagagatt attgaagaca      4080
     ttccggagct acgtgttgct ccaacagtgt tacctgtaat tgaagaagaa cagttagaag      4140
     tgttttcgaa gtacagttcg tacagaaagt tacaacgtgt aattgcgctg gtgttgcgtt      4200
     tcgccaacaa ctgcaagaag aaggattcag cttcacgtgt gaataagcct atccctaccg      4260
     tggctgaact tcgtcttgca atgaacatta ttgtgaaagt gatacaacga gaagagctca      4320
     gcgatgagat tgctcgagtc gaatcgggtg aacagtgtcg aaagcttggt tcgttgggac      4380
     cgatccttgt aaatggggtg cttagagtcg gaggacgttt agagcattcc aagctaccat      4440
     atggtgaaaa gcatccgatc atcctgccgt gtaaaagtac gattgtgcga atgctgattc      4500
     gtgccctaca tgaggagcat ctgcatctgg gaccaactgg tttggttcat gtgatccgaa      4560
     gagaattctg gttaatcaat gctgctgcga ctgttcgtgg agtgaccaga tcttgcgtga      4620
     agtgtttcaa ggtcaagccc atcgatacaa gccagtatat gggaaatctg ccgtcctgtc      4680
     gcgtgacaca tgcgccccct ttttccgtca ctggcgtaga ttacgctgga ccgtttcata      4740
     tcaagcaggg cttgcgtaag gtgaccacag tcaagggata tgtagcggtt tttgtatgta      4800
     tggttactcg agccgtgcat ctagagctgg tgtcagacat gactaccagt gccttcatcg      4860
     ctgcgctaca gaggttcgtg agtcggcgtg gaattgtgca tcagctgcat tccgacaacg      4920
     gcaccaattt tcgtggtgca catcatgagc tgaatcaact ctaccaggcg ttcaaacagg      4980
     agcaagatac ccaccaaatc gagtcgttct gcgtgtccaa gggaattgaa tggcaattta      5040
     ttccggcgga tgcccccgaa tttggtggta tatgggaagc ggcagtcaag agtatgaaga      5100
     gtcatctgaa gaggatcatt ggaaatgcat ccctgaattt cgagcagtat gtgactgtcc      5160
     tggcagaaat cgaagcgatc ctgaattccc gtccgctatt cgtgacatcg tcaaggtcgg      5220
     acagtccaga agtgattacg cctgcccatt accttatcgg gcgtcctctc accgcaatac      5280
     cagagccgtc gtatgaagac atccaagcca accgattgga taagtggcag cacctgcaaa      5340
     tgctccgaga gcatttctgg aaggcttggt cccgcgaata cctgagtagc ttgcagtcta      5400
     gaaaaaagaa ccagaaactc aaatcaaatg ttagtcctgg aatgattgtt ctggtgcaca      5460
     accggaattt gccccctctg caatggaagc tgggtgtcgt aaccaagacc tttcctggag      5520
     tagatggctt gatacgagcc gtagatgtct acagcgacaa gtcaacgttt cgccgcccga      5580
     tcaacaaatt gtcagtcctg ccgatagaag acaacaaggc ctacttcggc caatctcaag      5640
     ttttgaaata gacatttcaa cgtggcggtg aa                                    5672
//
ID   BEL-24_AA-LTR repbase;    DNA;    INV; 443 BP.
XX
AC   supercont1.15;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AA_;
KW   BEL-24_AA-I; BEL-24_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-443
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.15; Positions 2074442 2074884.
XX
SQ   Sequence 443 BP; 118 A; 113 C; 99 G; 113 T; 0 other;
     tgttccgtgt acggaaggaa tcatgtgatg cgtgaacata tttgcaatcc ttttccttcc        60
     atttctatcc cgcgcgtgtg gagacttttc ttccacgccc caccttcatg cacgatcacg       120
     ccacgcaagg ctctgtgcag aggaaggaag tgtgaaaaag tacagtcttc gagaaagtgt       180
     cgacagcaac caacgtgttt agaagaaagt tccaactcac gtgttaattt agttaattaa       240
     agagtagtta agtgtaaaac ccagtgtttt agatcatttc ccagtaaccc agtcctagtt       300
     ccgaagaagt gtcctcccga aagagccgta aagtgtatcg gctacaagac gaagcgtcca       360
     gcgagggatc cttaccctct agcttcggcc gtcctcccgg aaaagtgtta cagtccactt       420
     tgctcgttcc cccagacgga aca                                               443
//
ID   BEL-24_AG-I repbase;    DNA;    INV; 5142 BP.
XX
AC   .
XX
DT   18-FEB-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AG_;
KW   BEL-24_AG-LTR; BEL-24_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5142
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1445-1445 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [4183-4767] - Integrase core
CC   'CATCT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..3724
FT                 /product="BEL-24_AG-I_2p"
FT                 /translation="MMTRTSKSAKEKPDEEHAEEVQSIEIDPDAHGFMRQA
FT                 AIDEVVRIRDTLLKAADEGSEFSNARLRIFQRSVEGASVQFLDHHQRLLKS
FT                 LSASDRQSETATYQEFRVLYEDTMTELESTLEGRSPPVVEKKEPETIPVQA
FT                 SAPVVVHTSLPRAIPSFSGRYEDWQKFKVMFRDVVDKTNEEPRIKLYHLER
FT                 ALTGEASMIIDAKTISDGNYDHAWKLLEEKYDDKRRIVDLHIKGLLDTEKM
FT                 KQENYECLRELVTGIETHVANLKFLGESFDGLSEKFVVYIISQCLDNETRK
FT                 QWESTVSRNEFPKYEDTITFLKSRVSVLERCKCSGKSEKQKNFVDKPGRSG
FT                 YRANTAITEQRCAVCKAAHETEKCPELSKLNVKQRGALLKKKGLCFVCLKY
FT                 GHWKNRCKSQIKCERCSGFHHTIMHYDQAESVVNQTASDEVPDSDVAVFSV
FT                 SQHSRVSTLPRVRVILQTALVNVIANGGRLVRCRALLDSGSQISCITRQLV
FT                 NKLGCRMVNTNMPVSGIGNVKSPVNKCCSVIVKSMCRNFTVDLRCLVYDEI
FT                 TGTLPASYFSIDNLRIPSDLDLADPDFNKPASIDLLIGMDRLPFIMRSGFV
FT                 KLSNELPVVMDTELGWVIGGCIDSSDIGEGVHTNIAVSDNLDQLLRRFWEI
FT                 EEISNEQCVQTEAQQCEEHFKKSHHRDVDGRYIVRLPLRETVDKLGNSRSM
FT                 ALRRFFALEAQLSRRPEVKEQYSMFMEEYKAMGHCREVDESLDLAEVKRWY
FT                 LPHHAVLNPSKNTTKCRVVFDASAKVNDISLNDVMMTGPTVQADLFSVQLR
FT                 FRMHRYVLSADVAKMFRQIKVDPRDTPLQRIFWRAESSSPIRVFELTTVTY
FT                 GTAAAPFLATRTLLQLADDEQLRFPLASRVVKENFYVDDGLFGANHVEELL
FT                 EVQRQIVQLFDSAGMHLHKWASNSEVLLSEVPREDRDSFTVLGESKANEII
FT                 KTLGIKWNPATDEFIFITPQISENSAPTKREVLSALAKIFDPLGLISPVIV
FT                 IAKMLMQELWKAQLGWDDKVDDSLLHGWTKFLAALPRENQIRIPRQMVNDD
FT                 SGFFELHGFADASDKAYGACVYIRSVNGHGSAEVRLVTSKSKVAPLKPTSI
FT                 PRKELMAAVLLCRLTIKVVDALFRTTFRSINLWSDSQVVLAWLKKPLDRLE
FT                 VFVRNRVAEITSHREFTWRYINTAINPADIVSRGQLASELADNELWWNGPA
FT                 FLKECTVEAEPTTPGV"
FT   CDS           3811..5115
FT                 /product="BEL-24_AG-I_1p"
FT                 /translation="MELSSIITAVKNGSRNHRFANLNLFLKDGLLRVGGRL
FT                 QHSQLPYESKHQLLLPNTSVITSRIITMIHREHLHVGCSGVINILRQQYWL
FT                 TNARSTVRKVLRGCVTCFRVNPTTVSQQMGDLPSYRVNAAPTFERVGLDYA
FT                 GPILLRSGIRRVSSSKGYICIFVCMVTKGIHLEAVENLTTEAFLAAFKRFV
FT                 SRRGIPQEVFSDNGTNFVGANAEIREMRKAYKKAVAAQGFVEFCQAKEISW
FT                 KHIPPNAPHFGGIWESGVKSVKAVLKKVYKTASLAIFEFYTLLCQIEAILN
FT                 SRPLYAHSSDPHDLECLTPAHFMINRPLVGVAERSYIDVAENRLNRWQRIQ
FT                 QLRDQFWTRWSKEYLNELQVRSKWITKQANVKPDILVLIKEDNMPPQFWKM
FT                 GRIVKTYTGPDGLVRVAEVFTKGGTYKRPIHKLAPIPGLEE"
XX
SQ   Sequence 5142 BP; 1485 A; 945 C; 1371 G; 1341 T; 0 other;
     ttggtccttc gaaccggatg ttagaaaagt gttagaagtg tgcatcatga tgactagaac        60
     atcgaagtct gcgaaggaga agcccgacga ggaacatgcg gaagaggtgc aatctattga       120
     gattgatccg gacgcgcatg gttttatgcg acaagcagca atcgacgagg tggtgagaat       180
     aagggacact ttgctaaagg ccgctgacga agggagcgaa ttctccaacg cacggttgag       240
     aatatttcaa aggtcagtgg aaggtgcaag tgtacagttt ctcgatcacc atcaacgttt       300
     gttgaaaagc ttatcagcga gtgatcgtca gagtgaaacc gcgacttacc aggaattccg       360
     tgttctatac gaggacacaa tgacggaatt ggagtcaacg ttggaaggcc gatcgccgcc       420
     tgtggttgaa aagaaagaac cagaaacaat acccgtgcaa gcgagtgcgc ctgtagtggt       480
     gcacacatcg ttgccgcgtg ccattccatc gttcagcgga cgatatgagg attggcaaaa       540
     gtttaaggta atgtttcggg acgtggttga taaaaccaac gaagaaccac gaatcaagct       600
     ctatcatttg gaaagagctc taacgggtga agcatcaatg ataattgatg caaaaacgat       660
     cagtgatggc aattatgatc atgcatggaa attgctcgaa gaaaagtacg acgacaaacg       720
     acggatagtg gacttgcaca tcaagggact tttggatacg gaaaagatga agcaggaaaa       780
     ttatgagtgt ttgcgtgaac tggtgacggg tatagagaca catgttgcga atctgaagtt       840
     tcttggtgag agttttgatg gtctgagtga gaaatttgtg gtgtacatta tttcacagtg       900
     cttggacaat gaaacgcgca aacaatggga gtcaactgta tcacggaacg agttcccgaa       960
     atacgaagac actataacgt tcctgaagag tcgtgtatca gtgcttgagc gttgcaagtg      1020
     tagtggtaaa tcggagaaac aaaagaattt cgtcgataaa cccggtcgtt ctggatacag      1080
     ggcaaatacg gctatcactg agcaaaggtg tgcggtttgt aaggctgcac atgaaacgga      1140
     aaagtgcccc gaactaagca aattgaatgt gaaacaacga ggagcgttgc tcaagaaaaa      1200
     agggttgtgt tttgtttgct tgaagtatgg tcattggaaa aatcggtgca agtcacagat      1260
     caagtgtgaa aggtgttcgg gttttcatca cacaatcatg cattacgatc aagcagagag      1320
     tgtagtgaat caaacagcat ccgatgaagt gccagattcc gatgtggcag tgtttagtgt      1380
     gagccaacac tcaagggttt caacgttgcc gagagtgcgt gtaatcttac aaacagctct      1440
     agtgaacgta atagccaatg gcggaaggtt agtgcgttgc cgagcattgt tggatagtgg      1500
     ctctcagata agctgcataa cacggcagct cgtgaataaa ttggggtgtc gaatggtgaa      1560
     tactaacatg ccagtgtcag ggatcgggaa cgttaagtca ccagtaaaca agtgttgttc      1620
     ggtgattgta aaatcaatgt gtagaaactt tactgttgac ttgcgttgtc ttgtgtatga      1680
     tgaaataacg ggaacccttc cagcgtctta tttcagtatt gataatctga gaataccaag      1740
     tgatcttgac ttagctgatc ctgactttaa caagccggcg tcaatagatt tgcttattgg      1800
     catggatcgt ttacctttca tcatgaggtc agggttcgtc aaactctcga atgaactacc      1860
     agttgtgatg gacactgaat taggatgggt gattggtggc tgtatcgaca gcagtgacat      1920
     tggtgaaggt gttcatacga acatagcagt ttctgataat ttagatcagt tattgcgaag      1980
     gttttgggaa atagaagaga tttctaacga acagtgcgtt caaacggaag cgcaacaatg      2040
     tgaagaacat tttaagaaaa gtcatcatcg cgatgtggac ggtaggtata tcgttcggct      2100
     tccattaagg gaaacagttg acaaacttgg caactcacgt tcgatggctt tgcgtagatt      2160
     ttttgctttg gaagctcagc ttagtcgccg tccagaagtg aaggagcagt attccatgtt      2220
     tatggaggaa tacaaggcta tgggccattg tcgcgaggtg gatgagtcgc tcgatttagc      2280
     tgaagttaaa aggtggtacc ttcctcacca tgcagttttg aaccccagca agaataccac      2340
     caaatgccgg gttgtatttg atgcatcggc taaagtgaat gatatttcat taaatgatgt      2400
     tatgatgacg ggtcccactg tgcaggctga tttattctca gttcagctga ggtttcggat      2460
     gcacagatac gtgctgagtg ctgatgttgc caaaatgttt aggcaaatca aggttgaccc      2520
     gagggatacg cccttacaaa gaatattttg gcgagctgag tcatcaagtc ctatccgtgt      2580
     ttttgaatta acaactgtaa cttacgggac tgctgcagcc cctttcttgg caacaagaac      2640
     cttgctacag ttggctgacg atgaacagct acggtttccg ttggctagtc gtgtagtaaa      2700
     ggaaaacttc tacgtggacg atggactttt cggtgcgaac catgtggaag agttgttaga      2760
     ggtacagcgt cagattgttc aattgttcga ttcagctggg atgcatttgc acaagtgggc      2820
     gtctaattct gaagtgttgt tgagcgaagt gccgagagaa gatcgagatt catttacggt      2880
     gttgggcgag agcaaggcaa atgaaataat aaaaactttg ggtatcaagt ggaatcctgc      2940
     tacggatgaa tttattttca tcactccaca gatatcggaa aactcggccc caacgaaaag      3000
     agaagtgctt tcggcattgg ccaaaatttt tgatcctctt ggtctcattt caccagtgat      3060
     tgtgattgct aaaatgttaa tgcaagagtt gtggaaggca cagcttggct gggatgacaa      3120
     ggtggatgat tctcttttgc atggatggac gaaatttctt gctgcgttac caagagagaa      3180
     tcaaatacgt attccgcgtc aaatggtgaa cgatgactca ggcttcttcg agttgcatgg      3240
     gtttgcagac gcttcggaca aagcatacgg tgcgtgcgtg tacattcggt cggttaacgg      3300
     acatggtagt gctgaggtac gtttagtgac aagcaagtct aaggttgctc ctctgaaacc      3360
     tacttcgata ccacgaaagg aactgatggc tgcggtgctt ctgtgccgat tgacgatcaa      3420
     ggttgtggat gctttgttta gaacaacgtt tagaagcatc aacttatggt ccgacagtca      3480
     ggtggtgctt gcctggttga aaaaaccttt agatcgtttg gaagtgtttg tacgcaaccg      3540
     agtagcagag atcacgtctc atcgcgagtt tacatggcgg tacattaaca cagcaatcaa      3600
     cccagcggac atcgtgtcaa gaggacagtt ggcttctgaa cttgccgaca acgagctttg      3660
     gtggaacggg ccagcattct tgaaagaatg tacggtagaa gctgagccga caacaccagg      3720
     cgtctgaagg agaatcgtat caaggactct accttgcgaa ttatagaact acgagattcg      3780
     tcaagacgga ttgtaggatt agttcagcag atggaactat cgagcatcat aacggcagtc      3840
     aaaaacggta gccgcaatca tcgttttgcg aatttgaacc tgtttctaaa agatggtttg      3900
     ctaagagtgg gtggacgtct gcaacattct cagctaccat acgaaagcaa gcatcaattg      3960
     ttgctgccta atacgagtgt gattacgagc agaatcatca ctatgataca tcgtgagcat      4020
     ctgcatgtgg ggtgctcggg cgttatcaac attctacgac aacaatactg gttgacgaat      4080
     gcgcggtcca cggtgcgcaa ggttcttcga ggatgtgtaa cctgttttag agtcaatcca      4140
     acgactgtaa gccaacagat gggggacctt ccttcgtatc gtgtgaatgc agctccgacg      4200
     tttgaacgtg ttggtctgga ctacgcagga ccaattttgc ttcgatcagg aatacggcgg      4260
     gtttcctcat cgaagggtta catttgcata tttgtgtgca tggtaaccaa gggaatacat      4320
     ctggaggctg tcgaaaatct aacgacggaa gcgtttctgg cggcttttaa aaggttcgtg      4380
     tcacgtaggg gaataccaca ggaggtattt agtgacaacg gcacgaactt tgtgggtgcg      4440
     aatgcggaaa ttcgagagat gcgaaaggcc tataagaaag ctgttgcagc tcagggattt      4500
     gttgaatttt gtcaagcaaa ggagatcagt tggaaacaca tccctcctaa cgctccacat      4560
     ttcggtggaa tttgggagag tggagttaaa agcgtaaagg cggtactcaa aaaggtgtac      4620
     aagacagcgt cgttagcaat ctttgaattc tataccttac tatgtcagat tgaagcgatt      4680
     ctgaattcta gaccattgta cgcgcattca agtgatccac atgatcttga atgtttgaca      4740
     ccagcgcact ttatgatcaa tcgacccttg gtaggagttg cggagcgctc gtatatagac      4800
     gttgcggaaa atagactaaa cagatggcag cgaattcagc agttgaggga tcaattttgg      4860
     acaagatggt caaaggaata tttaaatgaa ttacaagtgc gaagtaaatg gatcacaaaa      4920
     caggctaatg ttaaaccaga tatattagtg ctgataaaag aggataatat gccaccacag      4980
     ttttggaaga tgggtcgaat tgttaagaca tatacagggc ctgacggttt agtaagggta      5040
     gcagaggtgt tcacgaaggg tggaacatac aaacggccaa tacataagtt agcgcctatc      5100
     ccaggattag aagagtagtt agacacttct tgtgtgggag ta                         5142
//
ID   BEL-24_AG-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   18-FEB-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AG_;
KW   BEL-24_AG-LTR; BEL-24_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-392
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1436-1436 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 392 BP; 113 A; 72 C; 110 G; 97 T; 0 other;
     tgttccgttg ataacggaag atgaagagga gagagagaga gggaggcatc gtgccacacg        60
     gaacgacatt tgtagttgac ggtaggcacg tacgtatgta tcgatataat aagtcgagcg       120
     aaacgccatt cggtgtattg gtgtacgtgt agtcttgttt ggtacgtgta gcgtagcagg       180
     tacgtgtacg cgtagcaggt agaaacgcgt atgcgatgaa tttatactgg tagtggtaag       240
     agcgagcggt gaatttcgaa ttgaaacggc attctgtttg tagcaaccgg cttagccaga       300
     cgcaaacgca gcggtgttaa gttagtcaat aaagcgacac aaaaaaccaa acttttcttt       360
     cgtatccact gcttcccaga gcaaactatc ca                                     392
//
ID   BEL-24_AnFu-I repbase;    DNA;    INV; 5311 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5311
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 675-675 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           85..5283
FT                 /product="BEL-24_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MGPKKATPSKVDMMRVMSQIHNLESFVQSYTSEQSSQ
FT                 CEHRLKLLESCWQTFDKMQTTLEDAEEDEEELACLLKSRNDMYDRYCCIKA
FT                 HLTSSQQDMNSTVIEAKVNSTSVAASPHLKLPKISLPTFDGKITEWLSFKD
FT                 RFTAMVASSNDIPDVMKLEYLLASLKGDVAKRFMHVDIAAENFNTTWNALL
FT                 ARYDNIRALKREYFKSIYSVAPMKDNSLEELRRVSDDFIRLTEGASKLKEP
FT                 IEHWDTPLANLLLYKLDAKTVMAWELFSAGDTSDSFSKLVEFMQTRIKILA
FT                 APSQLSLSSSKPSTSKVAGTKQTRSLASASVASTSNRCHACEQSHLLYQCQ
FT                 VFKSMHVSERRKLINTKKLCFNCFRAGHSAKECKSNHKCFKCQRNHHTLLH
FT                 LDEATENCVEQSTKEQVDATSHICTNSLTVLLQTAAVQVIDDAGRIHQVRA
FT                 LLDSGSMCNFISTSLARRLSNAMSKTDVCISGIGKRQSNISQSVEAIISSK
FT                 VHQFSMKLCFLVIDSPTVDLPIVQVDPTKWNIDNIPLADPLFHAPGPIDIV
FT                 IGCEAYWLVHCPGKLYIGPNHPSLVNTKFGWTITGSVPIRSVGSQHSANIA
FT                 ALPVSLKEEINRFWELDAVVTSNALPEDADPCEQLYKKTTVRNEDGRFVVR
FT                 LPKTFNSKVKIGDSRAIAERRFYNTERRLQRNPNTYEQYRQFMLTYEQLGH
FT                 MKPLPEPINDSILHCYLPHHPVFKESSTTTKLRVVFDASCQTESGCSLNDL
FT                 LLVGPTVQPDLFSIILRFRTFAVALSADIEKMYRQVLIHPDDQPLHRILWR
FT                 TGSDQPLQCYELQTVTYGTASAPFLATRSMKQIAIDIAESQPIVSEAIATH
FT                 FYVDDFLSGSHDEQSAISLQQDISEVLKQYGFSLKKWASNSSVVLQNIPND
FT                 DLALQECHDLQAENTITTLGVTWSPGEDAFSYKSINSTPPAVVTRRNLLSS
FT                 VFQIFDPLGLVGPVVCRAKLMMQQAWSVMHENGKQYDWDTPLPLKLQTAWK
FT                 SFHSDIHLLKKLSIPRFIFAGNHSAFELHFFGDASEKAYGTCCYVRYVSNT
FT                 GIHVNLLASRSKVAPISARHTIARLELCAALLCIRLLPKVLSAIRCNPSRI
FT                 MLWTDSTTVLHWLQASPTRWKPFVANRTSEILEVSDVNQWHHVPGIENPAD
FT                 DISRGMDPIDIVHSSRWWSGPSWLSETCDKWPKGSTDLADLSVVNEEYRNS
FT                 TIIAMATTASSFCERLFARYSTYTKLLRAVAYYRRFIIYIQHRFNKNKKQC
FT                 EVPTTLFSRWLTTEELKAAERCVCLLQQKQMYSEELIALQKGRAISRSSPL
FT                 RWVNPKLCDDGLIHVGGRLSNANIPEESKFPIILASKHPLTLLLVRDCHTK
FT                 LLHAGPQLMLATLRQKYWILGGRNLIRNVYHQCILCFKRKPSFITQPIADL
FT                 PASRVQPTRPFAVSGVDYCGPFLVKFNTRRSHPRKVYIAIFVCFSTRAVHI
FT                 EVVTDLSSAAFIAALQRFISRRGKVNELHSDNGTAFKGAAHQLRALYAMLK
FT                 TDDHSRECIFNWCAVNEIIWRFIPPRAPQFGGLWEAAVKSLKNHLLKEVGT
FT                 TTMMYEDFITLCSQVEMCLNSRPLIPIPTETTDIEVLTPGHFLVGSNFQMV
FT                 PDTNITKVPDNRLSHWRHTQKMLQTIWTRWFAEYLQQLQARTTDRRHPTIN
FT                 IDVGRVVILKEDNIPPAQWPLGIITDVHPGKDGVVRVVSLRTPRGKTITRP
FT                 VSRIALLPIDELK"
XX
SQ   Sequence 5311 BP; 1587 A; 1219 C; 1106 G; 1399 T; 0 other;
     ttttggtcct tcgaaccgga tctgcggact aatccatcga tcttgtattg ttaaccaacg        60
     gtgcgtcgat ttatttaacc aacaatgggt ccgaagaaag cgacgccaag taaagtggac       120
     atgatgcgcg tcatgtcgca aatacataac ctagaaagct ttgttcaatc gtacaccagt       180
     gagcaatctt cgcaatgtga acaccgattg aagctactcg agagttgttg gcagacgttc       240
     gataaaatgc aaacgacgct tgaagatgcc gaagaagatg aagaagaact tgcttgcctg       300
     ctcaaaagca gaaatgatat gtacgatcga tattgctgca taaaagctca cctcacatca       360
     tcgcaacaag acatgaacag cacagtgatt gaagccaagg taaactccac ctctgtagct       420
     gcttcaccgc acctgaaact gccaaaaata agtctaccca cgttcgacgg aaagatcacc       480
     gaatggctca gttttaagga tcggtttact gcaatggtag catcatccaa cgatattccg       540
     gatgttatga agctggaata tctcttagca tcgttgaagg gcgatgttgc taagcgtttt       600
     atgcatgttg acattgctgc agaaaacttc aataccacct ggaatgcgtt gttagcaaga       660
     tacgacaaca ttcgagcctt aaagcgtgag tactttaaat ctatttactc cgtagcacca       720
     atgaaggaca attccttgga ggaattacgt cgcgtgtccg atgatttcat tagactcacc       780
     gaaggagcta gcaaactgaa ggagcccatc gagcattggg acacaccgct tgcaaatttg       840
     ctgctttata agttggatgc taaaaccgtc atggcatggg aactattttc tgcaggtgat       900
     acttccgata gcttttccaa gctagttgag tttatgcaaa ctagaatcaa aatactagcc       960
     gcaccttctc aactgtcatt atcttcttct aaaccaagta cttcgaaggt ggccggcaca      1020
     aagcaaacaa ggagcctggc gagtgccagt gtcgcttcta catccaaccg ctgccacgct      1080
     tgcgaacaat cgcacctact ttatcaatgc caagttttca aatccatgca tgttagtgag      1140
     cgacgtaagc tcatcaacac caagaagcta tgtttcaatt gcttcagggc aggacattcg      1200
     gcaaaggaat gtaaatcaaa tcacaaatgt tttaaatgcc aacggaacca ccacacattg      1260
     ctccatttgg atgaagcaac tgagaattgt gtggaacagt cgacgaaaga gcaagttgat      1320
     gccacatcgc acatatgtac caacagtctt actgtcttac tgcagacggc agcagtccag      1380
     gttattgacg atgcaggcag aatccaccaa gtgcgcgcgt tgctagattc cggatcaatg      1440
     tgcaatttta tatcgacttc cttagccagg cgattatcca acgctatgag caaaaccgac      1500
     gtatgcatct caggaatagg caaacgtcag agcaacatta gccaatctgt cgaagcaatc      1560
     atttcatcaa aggttcacca attctccatg aagctatgtt ttctagttat tgattctcca      1620
     acagttgatc taccaatagt tcaagttgat cccactaagt ggaatattga caacattcca      1680
     ttagctgatc cattattcca cgcaccaggc cccatcgaca tcgttattgg ttgcgaagca      1740
     tattggttag tgcactgtcc tggaaaactt tatattggtc caaatcatcc atcgctagtt      1800
     aacaccaagt ttggctggac aataacaggt tcagttccta taagatctgt tggcagtcag      1860
     cactcggcaa atattgcagc acttccagtg tcgttaaagg aagaaatcaa tcgattttgg      1920
     gagctggatg ctgttgtcac ttcaaatgca cttcctgaag atgctgatcc atgtgagcaa      1980
     ttgtataaga agacaacggt tcgtaatgaa gatggcaggt tcgttgtgag attaccaaaa      2040
     acattcaact ccaaagtcaa gattggcgat tcgcgagcta tagctgaacg cagattttac      2100
     aatactgaac gacgcctgca acgcaatcct aacacctacg agcagtatcg ccaatttatg      2160
     cttacatacg aacagttggg tcatatgaaa ccactgccgg aacctattaa tgattcaata      2220
     cttcactgtt acttgccgca ccatccggtg tttaaggaat cgagtacaac aacgaaacta      2280
     cgtgtagtat ttgatgcctc atgtcagacc gaatcaggat gttcgttgaa tgatctattg      2340
     ctagttggac caaccgtgca acccgattta ttttccataa tcctacgctt cagaaccttt      2400
     gctgttgcct tatcggcgga catagagaag atgtaccgcc aggtattaat ccatcctgat      2460
     gatcaaccgc ttcatcgcat cctttggaga acgggttcag accagccatt gcagtgttat      2520
     gaattacaga ctgtcactta tggtaccgct tccgcgcctt ttctggcaac tcgttcaatg      2580
     aagcaaattg caattgatat agctgaatca cagccgatcg tttctgaggc aatcgccact      2640
     catttttatg ttgatgattt cctatcgggc tcccacgacg aacaatcagc aatatctttg      2700
     caacaagata tctctgaagt actgaagcaa tatggcttta gtttgaaaaa atgggcttca      2760
     aactcgtcag tcgtactcca aaacattcct aatgatgact tagccttgca agaatgtcat      2820
     gatctacaag ccgagaacac aataactacg cttggtgtta catggagccc tggggaagat      2880
     gctttcagct ataaaagcat aaattcaacg ccaccagctg tcgttaccag acgaaatcta      2940
     ctgtcatcag ttttccaaat attcgatcca ttgggtttag ttggtcctgt tgtttgtagg      3000
     gctaagttga tgatgcagca agcttggtcc gtgatgcatg aaaatgggaa gcagtatgat      3060
     tgggacacgc cgttaccctt gaagctacaa acagcatgga aatccttcca ttctgatatt      3120
     cacctattaa agaagttaag tatcccgcgc ttcatctttg ctggaaacca ttcagcattc      3180
     gaactacact tttttggcga tgcgtcagaa aaggcctatg gaacatgttg ttatgtaaga      3240
     tatgtatcca acaccggtat tcatgtaaac ttgctcgcat caaggtcaaa ggtagctccg      3300
     atttcagcgc gacacacaat tgcccgattg gaactatgcg ctgcgctgtt atgtatccgc      3360
     ctcttaccga aagtgctaag tgctatacga tgtaacccat caaggattat gttatggaca      3420
     gattcaacaa ctgtcctaca ctggctccaa gcatcaccta caagatggaa accatttgta      3480
     gcaaaccgga cgtcagagat cctagaggta tcagatgtca accagtggca tcacgttccc      3540
     ggaatcgaaa acccagccga tgacatttcg agaggaatgg atccaatcga tatagtacat      3600
     tcgtctcgat ggtggtcagg accatcttgg ttatcagaaa catgtgacaa atggccaaag      3660
     ggatccacag atcttgccga tctatcagtc gtcaacgaag aatatcgtaa ctctacaatt      3720
     attgcaatgg caacaacagc aagttcattt tgcgaaagac tgttcgcaag gtactcaacg      3780
     tacactaaac ttcttcgtgc tgtggcatac tatcgtcgat ttatcattta tatacaacat      3840
     cggttcaaca aaaataagaa acaatgtgaa gtcccaacaa ctttgttctc tcgatggttg      3900
     acaacggaag aacttaaagc tgctgaaaga tgtgtgtgcc tgttgcagca gaagcagatg      3960
     tactccgagg aactaattgc cctacaaaag ggtcgagcca tctcacgatc atctccatta      4020
     agatgggtga atcccaaatt atgtgatgat ggactcattc atgtcggtgg aaggttaagc      4080
     aatgccaaca taccagaaga gtcaaaattt ccaataattt tagcatcaaa gcatccactt      4140
     acattattgt tggtccgaga ttgtcacacc aaactactac atgccgggcc tcaactaatg      4200
     ttggctacac ttcgacagaa atattggatt ctcggaggaa ggaatcttat tcggaatgta      4260
     taccatcaat gcattctgtg tttcaaacga aaaccgtcat tcatcaccca acctatagcc      4320
     gacctaccag ctagccgtgt gcaacctaca agaccttttg cagtctccgg ggtcgactat      4380
     tgcggtccat ttttggtgaa gttcaataca agacgttctc atccacgcaa agtatacatt      4440
     gcaatctttg tatgcttctc aactcgggct gttcacattg aagtggtcac tgatttgtca      4500
     tcagcagcat ttatcgcagc cttacaaaga ttcatatctc ggcgtggcaa ggtgaatgaa      4560
     cttcattcag acaacggtac agcatttaaa ggagccgcac atcaattacg tgcgttatac      4620
     gcaatgctaa agacagatga ccattcaaga gaatgcatat tcaactggtg tgctgtaaat      4680
     gaaatcatct ggcgattcat tcccccacgg gcacctcagt ttggcggact gtgggaagcc      4740
     gcagtaaaat cattgaaaaa tcatctactg aaggaagttg gaacaactac tatgatgtac      4800
     gaagacttca taacactctg ttcacaagtg gaaatgtgtc tcaattcacg tcccctgatt      4860
     ccaattccta cggagacaac tgatattgaa gtgttaacac ctgggcactt tctcgttggc      4920
     tcaaatttcc aaatggttcc tgatactaac atcactaaag ttcctgataa tcgtttgtct      4980
     cattggaggc acacccagaa gatgctgcaa accatatgga ctaggtggtt tgcagaatac      5040
     ctacaacaac tgcaagcaag aacaaccgac agacgtcatc caacaatcaa cattgatgtg      5100
     ggaagagtgg tgatactgaa ggaagacaac atcccacctg cccaatggcc gctcggtatc      5160
     ataacagacg tgcatcctgg taaggacggc gttgttcgag tagtgtcact acgaacacct      5220
     cgtggtaaga caatcacacg accagtttct cgaattgcct tgctaccaat agacgagttg      5280
     aaataaatga gttatttcaa ggtggccgga a                                     5311
//
ID   BEL-24_AnFu-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-221
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 728-728 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 221 BP; 82 A; 39 C; 47 G; 53 T; 0 other;
     tgttaatgcc aatcgtgaat ttgcacaaga cagtataatg aagtgaattt ttcgcaagca        60
     agcggttgct acagtgacag caggatgtgg tcgaagaaga agaaaaggaa attaataaag       120
     gaagaaagtg gtaaggtgat cccagccaac catacaacac gagattgttt tttccaagtt       180
     ttaccgcaga ttccaaaacc agcatactta tatcacaatc a                           221
//
ID   BEL-24_CQ-I repbase;    DNA;    INV; 2391 BP.
XX
AC   AAWU01010212;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_CQ_;
KW   BEL-24_CQ-LTR; BEL-24_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2391
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 201-201 (2011).
XX
DR   GenBank; AAWU01010212; Positions   21750   24140.
XX
CC   'GATAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..2347
FT                 /product="BEL-24_CQ-I_1p"
FT                 /translation="MEEQLKALVRQRDAVERRLKRVQADLKTSTAAPNENL
FT                 RNVHFVKHQLSNVESAFVKFGEYQEKIYAMALAVEEQAKHEKCELEFEALR
FT                 RGLTVKLKGLVEDLEKPGLNATNVPAASPHYLPPLNVPLPKFDGTYETWLS
FT                 FKSMFQHVMARYTAEAPAIKLYHLRDSLVGKAAGVIDQDIVNNNDYEAAWA
FT                 VLEELYGDKRVIIDRHIDVVFALPKISRDNAAELRKLIDTCGKHVEGLKSL
FT                 QLPVNGLGEQMLLNLLASRMDRDTRKAWEAEQKVGVLPTYAATIAFLKERC
FT                 RVLERVEPCGETNVNPQRSVALVVASGAKCYTCNQQHEIKDCEQFKSRSVN
FT                 ERFSQLRKHGLCFNCTKRGHRAGECTSTNSCERCKKRHHTMLHKDSPRKPE
FT                 IAPNSTAADAANPKQRRHFGRGPTCCATTKKLVMLPTAVVQVYGENGVPHL
FT                 CRTLIDSCSQNHFVTERFANLLAVNRERVNCEVSGLNEDTTRISHLVRATV
FT                 KSRVGDYAADVELLLTPKITGDVPAKMIDVAGWNLPSNVELADPNFNHSGR
FT                 VDMLLGAELFWDLVKDGKISLSENLPSLRETEFGWIVGGALPIRTPVTASS
FT                 FCGVSTRG"
XX
SQ   Sequence 2391 BP; 580 A; 556 C; 785 G; 470 T; 0 other;
     ttttggtcct tcatggccgg attgctggag cagtgatccg tggtatgaag agacgggttg        60
     ccggagtggg aactcgaaca ttcgcggtcg aagtgtccgc gtgtgtgtgt gaagcgcggg       120
     gcgtagcacc cacgctgcta agaaaaagtg attgaacttt ggaagtctgt gaccggacgg       180
     ctggagagtg gttcgggaag cggccttttt gaaggaaagc atcgggcgga gtgtccggga       240
     gtgaaaaagt gcgaccggac gactggagag tggtctgaag gtgacatttg acggtggaaa       300
     ccgaaccgaa aacaccagca aaggcttcgt gtgtgtgtga cagcagtgag cgtgttggaa       360
     acttccggcg cggggcatag catcatctag tggaagaggg gctgtgtaat tcgaagagtg       420
     ccagaaagaa gtgtccgaag aagaagccgg caacgggggt gagaaggagg aagtgacacc       480
     aatctgcaag cagttgctgg tgcagcggaa gaaggaagac gcccgtaaga tggaggagca       540
     gctgaaagct cttgtgcgtc agcgagatgc tgtggaaagg aggttgaagc gggtgcaggc       600
     ggatttaaag acgagtacag cggcgccgaa cgaaaatctg cggaacgtgc acttcgtgaa       660
     gcatcagctg agcaacgtgg agagcgcttt tgtcaagttc ggtgagtacc aggagaaaat       720
     ttatgcgatg gcactcgcgg tggaagaaca ggcgaaacat gagaagtgcg agctcgagtt       780
     cgaggcgctg cgccgcggac tgactgtgaa gctcaaaggt ttggttgagg atctagagaa       840
     gccagggctg aacgctacga acgttccggc tgcctcgccg cattaccttc cgccgctgaa       900
     cgtgcctttg ccgaagttcg acgggactta cgagacgtgg ctctcgttta agtcgatgtt       960
     tcagcacgtc atggcacgat atacggctga ggctccggcg atcaagcttt accacctgcg      1020
     agactcgcta gtcggaaagg ctgccggtgt gattgaccag gacatagtca ataacaacga      1080
     ctatgaggcg gcgtgggccg ttctcgaaga gctgtacgga gacaagcgtg tgatcatcga      1140
     tcggcacatc gacgttgtct tcgctttgcc caagatctcc cgcgacaacg cagccgagct      1200
     ccgcaagctg atcgacacat gtgggaaaca cgttgaggga ctgaagtcgc tgcagcttcc      1260
     ggtcaacgga ctgggggagc agatgctctt gaacctgctg gcgtccagga tggatcggga      1320
     cacgcggaaa gcctgggagg cggaacagaa agtcggagtg cttccgacgt acgcagccac      1380
     catcgcgttt ctgaaggaga ggtgccgtgt cctcgaaaga gtggaaccgt gcggtgagac      1440
     caacgtcaat ccacaacgat cggtcgccct ggtggtcgcg agcggagcga agtgttacac      1500
     ttgcaaccag cagcacgaga tcaaggattg cgagcagttc aaatcgagga gcgtcaacga      1560
     aaggttcagc cagctacgga agcatggact gtgctttaat tgcaccaaga gggggcatcg      1620
     cgcaggcgag tgcacttcta caaactcgtg cgagaggtgc aagaagcggc atcacactat      1680
     gttgcacaag gatagcccga ggaagccgga gatcgctccg aattcgacgg cggcggatgc      1740
     ggcgaacccg aaacagcggc ggcactttgg acgaggtcct acgtgctgcg ctacaacgaa      1800
     gaaactggtc atgctgccga cagccgtagt ccaggtatac ggtgaaaatg gcgtgccaca      1860
     cctgtgccgg acgttgatcg attcctgctc gcaaaaccac tttgttaccg aaagattcgc      1920
     caatcttctg gcggttaata gagaacgcgt caactgtgag gtaagtggtc tgaacgaaga      1980
     cacgacgaga ataagtcacc tggtccgtgc gacggtcaag tctcgcgttg gcgactacgc      2040
     ggccgacgtc gagttgctgt tgacgcctaa gatcactggc gacgtgccgg cgaagatgat      2100
     cgacgtcgct gggtggaacc tgccatctaa cgtcgagctt gcggatccca acttcaacca      2160
     cagcggtcga gtcgacatgc tcttgggagc tgagttgttc tgggatttgg tcaaggatgg      2220
     aaagatttca ctgtcggaga acttgccctc gctcagagag actgagtttg gctggatcgt      2280
     cggcggtgcg ctgccgattc gaacacctgt gacggcgagc tctttctgcg gtgtttcaac      2340
     acgaggatag ttggagatga attgttgaac tgtttcaaca atgggggagg a               2391
//
ID   BEL-24_CQ-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   AAWU01010212;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_CQ_;
KW   BEL-24_CQ-I; BEL-24_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-206
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 202-202 (2011).
XX
DR   GenBank; AAWU01010212; Positions   21544   21749.
XX
SQ   Sequence 206 BP; 56 A; 39 C; 44 G; 67 T; 0 other;
     tgttcggcga gattttgttg tgaccacctt atgtgtaaat aaccttgatt ccgtttttat        60
     cgccacctat tttgtacaga gtcttgttat taaacgtaaa gttgttgacc agaaaacgga       120
     gcggaaagac gtgtgttttg tgtctcttcc gccaaattcg aaaccgagaa aatacagtcc       180
     gctgaattct gatttatcga ggaaca                                            206
//
ID   BEL-24_DEl-LTR repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-389
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7049-7049 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Internal region is indetermined.
XX
SQ   Sequence 389 BP; 74 A; 140 C; 82 G; 89 T; 4 other;
     tgtttaggca gcggaacaag atcgagaggc ctcgctcccg cactcccgct ctccgccgct        60
     cagaacattc cagcgagctt tccgcctctc accacttcca aggaactctc ccgctcttgg       120
     agagttcccg gctgcgctcg gcgcttgaag cgctctagtt tttaaktttt cagttccaaa       180
     attgtcaaga wcgtgaatac atcgcccggc cggtccgcgc takacaacaa cgacacccaa       240
     gtcttttttt ccctctcctt ttcgggtcgc gaccgagtgg ttttttttcs ccctccacag       300
     ccgccaccga tcagcatccc gctgctacgt tggagctgcc ttctaccaga agtcgacgac       360
     ccccagcaac ccccgctgcc ccaggaaca                                         389
//
ID   BEL-24_DTa-I repbase;    DNA;    INV; 7552 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   15-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7552
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5689-5689 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 7552 BP; 2425 A; 1732 C; 1631 G; 1750 T; 14 other;
     ttttggtgac cccgacgtga tctcaccaag agatcacacc atagaacaca acgttggaga        60
     tatcttccat acaagtcctt ttgcccaagt cgtcaacaag gcgacagatt aaggacacct       120
     gagcaaagtc gactcaggaa gttggaagac tggtcaacaa ggcgaccagc tccgtcaacg       180
     atttgataaa atcgtttttt gtgatcccgg taaacggatt tagatcatcc aatcccggac       240
     acattctcga agttgtcaac aggcgacact ttgaaaccag aatcaaacat tctcagaata       300
     cgagaactca gcaccacagt tgctgtcatc aaattcaccc aaatcattca taagtgttaa       360
     aagcttctta gaccatttcg gttgcgaata ggagcgtatc cagctataca agcaaataaa       420
     acactcccaa cgggtcagaa gttttaacac aaggtaataa atatgagtga catggaggag       480
     caagccgtca aagaagcact agacgtgcaa gaggagatca gtcaagaaat ctccaaattc       540
     atcatcaact tcaagaaaga ttcatcggag aggaagtcaa gtccgaacta ttatgaaaat       600
     agactaacca ttctcgatga cgcttggaat cgattcacaa cgaatgatct caagattcct       660
     caaaagtata gaactacgtt atacatgaag ttctataacg actgtcgtga gtcatacgac       720
     aaatatcgag ctatcatacg ggacggcatg gaacaatcaa caagccaagc cgaggtaatt       780
     ccagacccaa ctggtaaccc tgcaagcatt cagcatccca cgatagggtt ccagaaacta       840
     atatctgcat gtcgtcgaca aaaggcaata tcagattcta ttaggcgcgc tctgaaagag       900
     tattcaggta cgggaaagag cgtaacaagt gatttgataa aatcactatg ggcgcaaacg       960
     caagagatcc atttctcggt acatgaagaa tacgatgatc caagcaaagg aggatatgac      1020
     atgaaatcct tcctgaaact tgaaaaggaa attcaagata tcttaggagc aaaatcaaac      1080
     tcctctagca atgaagatat gcatttgccc agagtcagca tccccaaatt cgatggggat      1140
     ctactcaaat ggactcagtt ttttgactta tttaaatgca tggtccatga tactaacatg      1200
     ccgacggtac ggaaaatgtg gtacctaaaa accaccgtaa ctggagaggc tgaaagattg      1260
     ataagacata tcgatcttaa ggaagaaaat tacctcagcg cctggggtat attagtcgat      1320
     tcctacaaca atccccgaca tgtggcagac acgattctca atcgtttcct gcatcaaaac      1380
     acagttagtg acgatccaag gtcattaaaa gagttgtaca ttacaactat cgagtctcta      1440
     gcatcattaa agggactggg catcgatgta tcaagttggg atacaatatt gattgccatc      1500
     atcaagcaaa aattggatct tgcaagcaga gccctatacg agcagtcgtt agatgggtcc      1560
     cgagagttac agggtctcga cacactgctc agctttctgg accagcgcat ccgagttctt      1620
     ggaacaggaa aaaagggaca acaatcaaga aaggaacaga agggtcctac atgctcatca      1680
     gccagtactg gaaaaggacc atgctgtcaa ttttgcaaaa ggaatcactg gctctataaa      1740
     tgcgatgact tccgcagcaa aacaataccc gaacgagtta attgggtaca aaaacaaaga      1800
     ctgtgtgtca actgcttcag caatgaccat aaggcaaagg attgccgtgg tcgcccgtgt      1860
     tttaagtgcg acaagaaaca tcatactttg ttgcatctgg aaaccacatc aggtgcatca      1920
     tccaatcaac attcacctac tgtaggtgca gcaagcaaca agaattataa cttgctggcc      1980
     acagtcaaag tatcagtgaa ggctagcaat ggtcaagttg ctaccttcag agcgctgcta      2040
     gattcaggat cacaaataaa tctgatttcc gaacgaatgg cttcagtact atcactgaaa      2100
     cttcatggaa cttctctacg gatcgagggc attggaggca atccaaaaac cagtagagca      2160
     agagcaaacg ttcaaataaa atcaatgcat aacgccttca cacaagaagt tgaagccttt      2220
     gtcctaccac acataatagc tgatcaaccg gcgcatcagt taaattcggc aagcctacaa      2280
     atcccaagca acatagctct agccgatcca aatttcgata agccaggaaa gattgacatg      2340
     cttatcggag cagagcacta ctattcattg ctgctgccaa accagtctat actaaagaca      2400
     ggaggaccag ttcttcagaa tacaaaactt ggatggatca ttgccggacg gatctcctcg      2460
     gatcacgatt cagcggcggt ttgtgccgcc gcagctacag acgaagaagt tgacacacta      2520
     ttggaacgat tctggactct agaaaatctt gaaaccgagg aaaggcatcg atcaccaata      2580
     gaggctcatt gcgaaatgca cttcgtagga aacttgggag tggcaaagga tggcaaattt      2640
     gttgtgaaac tcccattttc tgaacagtct tcagccctgg gggcatcaca gaaaacagcc      2700
     acgaatagat ttctggctct agaaagaaga acgtcacctg aagtctggaa aggctacgtg      2760
     gactttatga atgaatacga agcactcgga cacatgaaac aagtgcatca aacagatata      2820
     cccgctaatc actacttcat tccacaccac tgtgtgctaa agccggaaag cagtacaaca      2880
     aagttgaggg tagtattcga cgcttcatgc aaaaccacca gcaacaagtc tttgaacgac      2940
     atactctatg ctggacccac ggtgcaaagc gagctatttg caattctatt acgcttccgc      3000
     actcataaat acgtgtttac agcggacata gagaaaatgt atcggcaggt gtggatacac      3060
     cctgacgatc aatatcatca actaatcgtc tggagaatga atccatcaga tgatcttaaa      3120
     tattatcggc tcaaaaccgt aacatacggt acaacgtcag ccccattcct agcaacaaaa      3180
     tgcttagatt acttgtccga gaaggcaaag gatcaattcc cgcttggatc gtctgctcta      3240
     aagcacgatt tctacgtaga tgactgtctc actggagcaa acagcgttgc ggaagcagtc      3300
     caaattcaaa aggaattaaa taaaatactg ttaccatccg gtttcaagct ccgaaaatgg      3360
     tgctccaata atgggcaaat tctaacagac gttcccgaag cagacaccat caaaaccgtc      3420
     aagctagacg aaacattgaa acactacagt gtcaagacgt tgggtttggt atggatgcca      3480
     caaagggatc aactgtgtgg gcgatcccag aaaagcgagg cgtcaatcat caccaaacgc      3540
     gtggtaagtt ccgagtcagc acaaattttt gacccacttg gactatttgc ccccgtggta      3600
     gtaaaggcaa aaatatttat gcaaacgctt tgggcgctga acctgagttg ggacgatgag      3660
     ctccctcaag aacttcaaaa tgattggaag aactatcgat cggatctcca agcattaaac      3720
     agtatgcaaa ttcctaggca catctataat ggaaaggttc cagtccatca agaagtacac      3780
     acatttgtgg atgcatcaga gcgtgcgtac ggagcagcag tatatataag agctacctac      3840
     aaaaacaatc aaatttcggt acgacttctt tgctccaagt cacgagtggc tccatccgcg      3900
     aaagaaactt tgccccgcct tgaactatgt gctgcgctgt tgggcgcgga actaacacac      3960
     agagtaagaa aggatttgcg attaccgatc gagaaggctt ctggatactt ctggactgac      4020
     tcaactgtag ttttgtcctg gataaacgca tcgtcggccg cataccacac gttcgtctcg      4080
     aatcggatag caaaaatcca agctgtctca gatccatctc aatggcgaca cgtgtcctcg      4140
     gcaaacaatc cagcagatgt gctatcaaga ggaattgcag ccagcaaatt atcagaacat      4200
     accctctggc tgtatggacc actttttcta cacggttcaa gtgacaaatg gatcaagagg      4260
     cccataatcg gtctaagtga tcttgaacgg cgaacaaaac aagtgagtct tccagcatgt      4320
     cagggtcaga caggggaaga actctataat tgcaagcata gcaatagttt tcgaaagcta      4380
     caaagaattg tggcatatat gatgcgtttc tgttacaaaa gaaacagatc aagtacaacc      4440
     accctatgca ttggtgaact aactcacgct cgtactatca tactgcgcac cattcagaaa      4500
     attgacttcg catgtgagta caagcaactt gttgcccaca aggccgtgga caaaaagagc      4560
     gctctcgtct ctctattccc catgatcggc aaggatagcc tcatcagagt cggagggaga      4620
     ttagaagaat ctaaactccc gtataacgca aagcatcaaa tcttgcttcc ttacaatgat      4680
     ccaatagtaa gaatgctgtt gcgagaaatg catgaagaga acatgcattg cggtgctcag      4740
     gcgttaagag ccattgccag acagcaatat tggattatca atgataaaac aatggcgagg      4800
     agcattatac attgttgtgt caagtgtaca aaggcacggc ccaaactaat gcaacaaatc      4860
     atgggcaatc tgccagtcga ccgagtaaca caagctcgac cattctttaa ttctggtgtt      4920
     gattactgcg ggccaatttg gattcaccat aaactccgtg gaaagagacc agacaaggcg      4980
     tatattgcag ttttctgctg tttcgctacg aaggcagtac atctagagtt ggtaagcgac      5040
     ctaacaacag atgcattctt aggtgctctt cgacggttct tgagtcgacg tggaaggtgt      5100
     cagaccatcc attgcgataa tgcaaccaac ttcgtcggcg ccaacaataa actaaaggcc      5160
     ttagaagaag cgatcttcac ggataaggca caagcccaga tcatccacca ttgcaatcag      5220
     agacaggtgg attttaagtt cataccgccc cgagctccat cgttcggcgg gctgtgggag      5280
     gctgcagtaa aatctgcgaa acggttacta gtatcagtca cagccaccgc atcattgacg      5340
     tttgaggagc ttaacactgt aatagtggaa gtcgaagcaa ttcttaattc tcgacctatt      5400
     acacccatgt cgtctgatcc tacggatgtg tctgcattaa ccccaggcca ttttctgatt      5460
     ggtgagccac taacggcccc acccgatgta aatctctccc caaccaacaa aacattggta      5520
     aaaagatggg aattagtgtc cagacttaag cacgcattct ggaagcagtg gtcaatggaa      5580
     taccttcaag agcttcaaac gcgcaacaaa tggaagacca tgtcgcagaa cgtcaaagaa      5640
     gggctacttg tattaataaa agaagataac ctgccggtga tgagttggcc gatgggaaaa      5700
     atagtaaaga catatcctgg caaagataat tacgtacgtg tagtagacgt aaaaattggt      5760
     tctcgcgtag ttcagcgacc aatcacacgg cttgccccgc ttcttaaaga agaagtatcg      5820
     acaaagcggt ctaacatttc catcgaagga gcaatagttt cagaagagat cccaaaaagg      5880
     aagaaagtaa aaattccagt tctaccaacg ttactagcaa tgctacttat tcttccgctc      5940
     gcagtgggac agtcaacaag tgtaactcag ttcgccaatc agcccggaat attctatgaa      6000
     cgactcggca ctgcaagaac ggcagtttcg gaatggacat cattgcgtat tatgatttga      6060
     aaccgtattg gagcgatatg aacatattgt ccactgggat taaggaactc agscacaagt      6120
     gttctgagct ccataamgaa aacgcatgca actcgacagt tgcgcatttt caacatgtwt      6180
     wtggcgagct gcaagaagga agttatctga tcaaccgttc ccgacagcga agatcaccac      6240
     tcgatgtagt aggtaccgtg gctaactcac tatttggtgt acttgacgcc aggtatgcag      6300
     acgacatggc caaggttatc aatgasgtga aatccaaatg tgttgatgat gctgcttaag      6360
     aatcaaacgt cgatcttgga ttctactata aacatagtca ggaaaagcaa gtcatccact      6420
     gataaccgca tcagaaattt ggmgcagcaa cttgcaacca tcaacaagga acgaggcaga      6480
     tatcaaggcg accacttaca gcaagcattc gtgatcttaa ctgcccagct aacgctgttg      6540
     kctactggaa tgcagcggat gcaccaaaat cagcgttctt acgamgttcg tcatcgaacc      6600
     atcagtccta tgctggtaac tcctaagcag ctaagagacc aatagacaaa attcgggatc      6660
     atctacttcc ggatcagatg ttgccggtct cgtcggaaaa tgtaatggaa ctctataaaa      6720
     tcatgcgcgc cgagggaact acaactacag atcatgttat attcaaaatg acwktgmctc      6780
     tggtatcaac agcacagcag gaagtcttca gcatcatccc catmccaacg tggcactcag      6840
     gaggctggaa tckttttgac attaagacwc ctatcatcgc tgtaaattcc catagagatc      6900
     aattcattgg tcctactgag gatgagttcg agcaatgtct agtagtgtcc aacgaacaca      6960
     ttgttcccgt cagcttcagc gctggaaatc gacatgactt cgctattcaa aaaatctgaa      7020
     acactcggga gattatgaaa tcgaagcaga tcggtttcgt taggaaccat caagaacgat      7080
     ggatgtttgc gcccacgaaa atagacttca aaccgtatta gagcgtgcat atactaatgg      7140
     ttaacatctc tgtcctcagg ctgcacgcac gaagcgtgaa ctcacaggca catccacgat      7200
     ttagcgttct tcgctttggc ggcataacaa gacgtggaaa atgcatcaag tggggactgc      7260
     aactcaggaa tcctgatcat tacaacaaag cctggctaag ctaaaggata cagcctggtc      7320
     aaatcaattt accactgtgc agcatcatca agtagccacg tatgctgcgt tagcaatatc      7380
     aataatattg atcattgcat atagtctcag aaggcgattc gtcaactgga agccacgaca      7440
     gccaacctgc accaaccaag agaacgacga gcagccatca cctgaaccta ccccacgaag      7500
     ttttgcgttc agcattagcg atggttgaac acttgttcaa cggccgggag aa              7552
//
ID   BEL-24_DTa-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   15-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-408
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5690-5690 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 408 BP; 121 A; 93 C; 64 G; 130 T; 0 other;
     tgttcagtcg cagcaatagt tataagtcag cgctctgaag tatcatatat cgggtcaagc        60
     cgtcagcaac attatcaatg acccacttat tggcacaagc ttattctgct gaattgtaac       120
     tatccgggct tgcataatgc ataataaccg acactttgct ttatacctat tctgttaacc       180
     tatgcacttt ttacctataa ataccgttaa gtttatacaa taaaatcagt aacaattttg       240
     actcctacaa tcaagtttta ctcattttgc attcaacaga ggctgtcgct ctagtcttca       300
     gatcctcata tgcaatcctt agtccaactg gttcaagttc tagttgcgac gactttaggc       360
     agacagttta tgtactgtat gccaggcacc taagccaatc aataaaca                    408
//
ID   BEL-24_SiCu-I repbase;    DNA;    INV; 5659 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5659
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4998-4998 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           96..5570
FT                 /product="BEL-24_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MVKIGRYIPHSTMAAKLVDLKEKAFKKEVDKLEEELK
FT                 KKEEDRDADKIELQIRIVQSKHAALEEAQQKLLEELLEKDDEAEYLKAEEK
FT                 LSDFQRDYDAAEKKANAALTVFQSAVADSRVHLPQLKLPEFSGDIRHWLRF
FT                 WAAFEEIDSNSTLSDADKFQYLLQSIPLASAARMCIAGFPESGKNYKNAVE
FT                 ELKKTYGNKTTLVKVYMRDLLQLAIRNANDKTRMDLMELVPLLVSQIRNLE
FT                 ELGVTSDKCEMVLYPVVESCLPDDVLLAWQRNAAYSEKLEAIVQFLNMEVQ
FT                 NKRERALARMDFSAASSSTTAGGESKRNGKKAATSDIPTASALMTTKNEDS
FT                 TSNSKKCAFCGGWRHASRKCRKAWEMPMKDRMEVIRKKNLCFCCLKVGHRS
FT                 ADCSANVECPLCKGKHFEVMCQRSDARNTQPETRRMMMVPSFPYTQQQSSG
FT                 FSGGGAPPHQFNVPQGPGPFRAALQQQITTPAPTVQQQQPPTMSIWSEDDS
FT                 GSSSTTQPRSTPGYSNVTSSKRVAMWTLMVVMETPRGPVQVRVFIDPGSEE
FT                 SYIEDKVAEFAGCKAVGEKMMRHQLFGGGVTEPRKHAQFEVQLHSVNGRTF
FT                 GTFVLNAVPKIAQSIAKPPIGDWIKKLEARGIQTTDQSGASEEVQLMFGMD
FT                 VFAQIKTGAFLRLDRFMFAEETIFGWVVGGERRSNAEAQVPVPTTTTQMVT
FT                 TMMLGSLTPEDLWSLEAIGIRDEATTQTREDLEAAAVAHFEKTVTRLEDGR
FT                 YQCRLPWIEGHRALLSNRRQAIARLNLLTKALQQDKFLDAYHSIITSWLDE
FT                 GIVEQVPEGNESSLEYFLPHRHVLKENSTTPVRPVFDASSKVKGSPSLNEC
FT                 LEKGPNLIELIPAVMTRFCWKKIGSVADVKKAFLQISVNEVDREALQFLWW
FT                 KDASCKEMQLYRHTRVVFGVTSSPFLLAATLRHHLLTDGQQRYPEVAEQLL
FT                 NSFYVDNSVSSHDSVEAAQNFERKSVELLATAQMDLRGWEHGPSQEKKLVP
FT                 VLGMQWDTQADKLALSMDGVLKKLEGPMTKRGLLSAVNAIFDPMGFVFPFT
FT                 IIPKFLFQKCCLLEMKWDDKLPEEIAVPFQKWKEQVPALARIWIPRWMCQA
FT                 DEESEVTFHIFSDASCAAFSSCVFARTTTGTGNVHVQLIMCRTRVAPSKKK
FT                 VTIPRLELLGCLIGVRLMKDVAKYLNLQHPKCYYHTDSSTALAWILNEKPW
FT                 ARFVQNRVDEIRAHTAPQEWRHVPGEHNPADLPSRGCDAERLLQLQWWEGP
FT                 EWLKNPEECWPKSSVQPKEEDVMAELRKTVVSALARNAEHVLDPALKFSNY
FT                 HTSLRVISIVLRYVECLKKRAQQRKVGAVIELQLQQAARVPASTVKDIAAA
FT                 ERCIIRTIQRTSFSGASDEKLKKLATFLDKDGILRVKSQLFFGDDKFGVRC
FT                 PAVLPSSHPVVKAAIFTEHRIYGHAGVQTTLALLRKRFWILQGRKTVSCVV
FT                 SSCPQCRRFLAKRCEIPGAPLPRDRIGNTAAFEVTGVDLMGPLFLFGGEKV
FT                 WVVLFTCAVYRCVHLEVTPTLSTDGFLRALRRFVARRGRPAKLYSDNGLNF
FT                 VGCHNLFAKLNWDQVRGYAAVRKMEWIFIPPTAAWWGGWWERLVGLTKTLL
FT                 RRILGKRVVAMEELVTIMCDVEATLNERPLTYLSDVDPLIPLCPAFFMRDN
FT                 GAGGLPEADAADAKALRGSARRCQSLRDGFRSRFRKEYLALLQHHAGSRNV
FT                 PVNPGDVVLIEHEDKKRVDWPWGVVKEIFPGRDDKSRKAIIKTKDGEYLRP
FT                 LQRLFLLETALSMEQGQSETTEPEVPQQAEAVQGPVAVITRAGRKVQQPQR
FT                 LGL"
XX
SQ   Sequence 5659 BP; 1492 A; 1373 C; 1626 G; 1167 T; 1 other;
     tggcgaacct gccaggattg gtgatagttt aattgtttaa ttaaagaaaa gactaattaa        60
     gtgtttttgt gagctcgagc ccctgccaac cgttgatggt gaagatagga cgttacatcc       120
     cacacagcac catggcagct aaacttgtgg acctgaagga gaaggccttc aagaaggaag       180
     tcgacaagct ggaggaggag ctcaagaaga aggaggagga tcgagacgct gacaaaatcg       240
     aactccaaat caggatcgtg caatccaagc acgcagcgct ggaggaagcg caacagaagt       300
     tactggagga attgctggag aaggatgacg aggccgagta tctcaaggcc gaagagaagc       360
     tgtcggattt tcagcgggat tatgacgctg ctgagaagaa ggctaacgca gcactcaccg       420
     ttttccagtc agcagtagca gactccagag tccacctccc tcagctgaaa ctaccggagt       480
     tttcaggtga catccgtcac tggctacgtt tttgggcagc atttgaggag atagacagca       540
     acagcacctt gtcggacgcg gacaagttcc agtacctgtt gcagagtatc ccactcgcct       600
     cagcagcacg gatgtgcata gcaggatttc ccgagtcggg gaaaaattac aaaaacgccg       660
     tggaggagct gaagaagacg tacgggaaca agacaaccct cgtcaaggtc tacatgcgtg       720
     atttgctgca gcttgcaatc cgcaatgcaa acgacaaaac gaggatggac ctgatggagc       780
     ttgtgccgct actcgtttcg cagataagga acttggagga actcggcgtg accagtgaca       840
     agtgcgagat ggtgctctac ccggtcgtcg agtcatgcct cccggacgac gtgctgctag       900
     catggcagcg taacgcagct tactccgaga agttggaggc tatcgtccag tttttgaaca       960
     tggaggttca aaataaacga gaacgagccc tcgcgcggat ggatttttcc gcagcgtcat      1020
     catcaacaac agcgggagga gaaagcaaga ggaatggcaa gaaagcagcc acatccgaca      1080
     tccccaccgc cagcgctctg atgacgacca aaaatgaaga ctccacctcc aacagcaaga      1140
     agtgcgcatt ttgtggagga tggaggcatg cctcccgtaa atgcaggaaa gcttgggaga      1200
     tgccaatgaa ggataggatg gaggtcatcc ggaagaagaa tttgtgcttt tgctgcctga      1260
     aggtgggtca ccgttcagcc gactgcagcg ccaacgtgga gtgccccctt tgcaaaggca      1320
     aacatttcga ggtcatgtgt cagcgcagcg acgccagaaa cactcaacca gagacgagaa      1380
     ggatgatgat ggtgccctcc ttcccataca ctcaacagca atcaagtgga ttcagtggag      1440
     gtggcgcacc tcctcatcaa tttaatgtgc cacagggacc gggtcctttc cgtgcagcat      1500
     tgcagcagca gattactacc cccgccccca cagtacagca acagcagcca cctacaatgt      1560
     caatctggag cgaagatgac agcggtagca gtagtactac acagccacgg tccaccccgg      1620
     gatacagcaa cgtcaccagc agcaagagag tggccatgtg gacgttgatg gtcgtcatgg      1680
     agacaccacg ggggcccgtt caagttcgag tcttcatcga ccctggctcg gaagagagct      1740
     acatcgaaga caaagtagca gaatttgcgg gatgcaaggc agttggggaa aagatgatgc      1800
     gtcatcaact ttttggagga ggagtcacgg agccaaggaa gcacgcacag ttcgaggttc      1860
     aactgcacag cgtcaatggc agaacattcg gcaccttcgt cctcaacgct gtaccgaaga      1920
     tagcgcaaag tattgctaag ccgccaattg gagattggat aaagaaattg gaggcaagag      1980
     gcatccagac tactgatcag tctggtgcca gcgaggaggt gcagcttatg tttgggatgg      2040
     acgtcttcgc ccaaataaag acaggagcct tcctccgcct cgaccgcttt atgttcgcgg      2100
     aggaaacgat ttttggatgg gttgttgggg gagagaggag gagcaatgcc gaggcacaag      2160
     ttccagttcc caccacaacc acacagatgg taacgaccat gatgctgggt agcttaaccc      2220
     ctgaagacct gtggagcctc gaagcaatcg ggatacggga tgaagccacg acccagacga      2280
     gagaagattt ggaggcagcg gcggtggctc actttgagaa gacagtgacc agactggaag      2340
     atggacgata ccagtgccga ctcccttgga ttgaaggaca tcgggcactc ctctccaacc      2400
     gccgccaagc tattgcaagg ctgaacttgc tcaccaaggc cctccaacaa gacaagttcc      2460
     tggatgctta tcatagcatc atcacttcct ggctagacga aggaattgtg gaacaagttc      2520
     cagaagggaa tgaaagtagc ctggagtact ttcttcccca ccgccacgtg ctgaaggaaa      2580
     acagcaccac tccagtgcgt cctgtgtttg acgcatcatc gaaggtgaaa ggcagcccct      2640
     ccctcaacga gtgtttggaa aagggaccaa acctaatcga gctcatcccc gcagtaatga      2700
     cgagattctg ctggaagaaa attgggagtg tggcagacgt gaagaaagcc tttcttcaga      2760
     tttcggtgaa cgaagtggat cgagaagctc ttcagttcct gtggtggaag gacgcaagtt      2820
     gcaaggagat gcaactctat cgtcatacac gcgttgtgtt tggcgtcacc tccagcccgt      2880
     tcctgttggc ggcaacactt cgtcatcacc tgttgacgga cggtcagcag cggtacccgg      2940
     aagtagcaga gcagctgcta aactcttttt atgtggacaa cagcgtgtcc agtcatgact      3000
     ccgtagaagc agcccaaaat ttcgagagga aatcagttga gctgctcgcc accgctcaaa      3060
     tggatcttag agggtgggag cacgggcctt cgcaggagaa gaagctagtt ccagtccttg      3120
     gtatgcagtg ggacacgcag gcagacaagt tggcgttgtc gatggacgga gtcctgaaga      3180
     agctggaggg tcctatgaca aagcgtggat tgctgtcagc cgtcaacgcc atcttcgacc      3240
     cgatgggatt cgtgttccca ttcaccatca tccccaagtt cctgttccaa aaatgctgcc      3300
     tattggaaat gaaatgggat gacaagctgc cggaagagat tgcagtaccg ttccagaagt      3360
     ggaaggagca agttccagca ctggcgagaa tctggattcc aagatggatg tgtcaagcag      3420
     acgaggaaag cgaggtcaca ttccacattt tttcggatgc ttcatgtgcc gctttttcca      3480
     gctgtgtatt cgcgaggacg acaacgggga ccggaaatgt ccacgtgcag ctgatcatgt      3540
     gccgaacgag ggtggccccc tcaaagaaga aagtgaccat tccaaggctg gagctacttg      3600
     gatgcctcat cggagtgagg ctaatgaagg acgtcgccaa gtatctcaac ttgcagcacc      3660
     cgaagtgcta ctaccacacg gattcaagca ccgccctcgc ctggatattg aacgagaagc      3720
     cgtgggcccg ctttgtgcag aatcgtgtgg acgagatccg ggcacataca gcaccccaag      3780
     agtggagaca tgttccaggg gaacacaacc cagcagatct accttcccgt ggatgtgacg      3840
     cagagcgctt gctgcagttg caatggtggg aggggccgga atggctgaaa aatccggagg      3900
     aatgctggcc aaagtcgagt gtccagccca aggaggagga tgtgatggcg gagttgagga      3960
     aaactgtcgt gtcagccctt gcgaggaatg cggagcacgt gttggatccc gcgctaaagt      4020
     tttccaatta ccacacatct ctccgtgtga tatcaatcgt gctgcggtac gtggagtgcc      4080
     tgaagaagag ggcgcaacag cgaaaagtgg gagcagtaat tgaattgcaa ctccaacaag      4140
     cagcaagagt tccagcgtca acggtcaagg acattgcagc agccgaacgc tgcatcatcc      4200
     ggacaatcca aaggacaagt ttcagcggag cgagcgacga gaagctgaag aaactggcta      4260
     cttttctgga caaggatgga attctccgtg tcaagagcca gctgtttttt ggagatgaca      4320
     agtttggagt ccgctgccca gctgtgctgc cttcaagtca tccggtggtg aaagcagcaa      4380
     ttttcacgga gcaccggatc tacggtcatg cgggagtgca gacaacattg gccctcctac      4440
     gcaaacgctt ttggatccta cagggaagga agaccgtcag ctgtgtcgtg agttcctgtc      4500
     cccaatgccg tcgttttttg gctaaacgct gtgagatccc cggagcacca ctgccgaggg      4560
     atagaattgg gaacactgca gcgttcgagg tcacaggcgt ggatctgatg gggccgctat      4620
     ttctttttgg aggtgaaaag gtgtgggtgg tgctattcac ctgcgctgtc taccgatgtg      4680
     tccacctgga ggtgacacca acgctttcca cggatggatt tctccgtgcc ttgcgccgtt      4740
     tcgtggctag acgagggagg cctgcaaagc tgtattcaga caacggtctg aattttgttg      4800
     gctgccacaa cctcttcgcc aaactgaact gggatcaagt tcgaggatac gcagcagtta      4860
     ggaagatgga gtggatcttt attccaccaa cagcagcatg gtggggcgga tggtgggagc      4920
     gcctcgttgg actcaccaag acgctgctaa ggagaattct ggggaagagg gtggtggcga      4980
     tggaggagct tgtcacaatc atgtgtgacg tggaagcaac gctgaacgag cgcccgttga      5040
     cctacctgtc agacgtggat cctctcatcc ccttgtgccc agcgtttttt atgagggata      5100
     atggagcggg tgggttgcca gaagcagacg ccgccgacgc caaagctctt cgtgggagcg      5160
     caagaaggtg ccagagtctg agggacggat tccgctcacg attccgtaag gaatacctgg      5220
     cacttctcca gcaccacgcc ggaagtcgca atgttccagt aaatcccgga gatgttgtcc      5280
     ttatcgagca cgaggacaag aagcgagtgg attggccgtg gggagtcgtc aaggagatat      5340
     tccccggaag agacgacaag tcccgcaagg ccatcatcaa aacgaaggac ggggagtacc      5400
     ttcgtcccct kcagcgactg ttcctgctgg agacagcttt gtccatggaa caggggcaaa      5460
     gtgagacaac tgaaccggaa gttccacagc aagcggaagc agtacaagga ccagtagcag      5520
     tgatcacaag agccggacgg aaagtgcagc agcctcaacg tttagggctt taagattatg      5580
     ttttttttgt attcacattt ctcttttgta aaattttatt ctctaattgt tattagaatt      5640
     gttaaaattt tagtgggag                                                   5659
//
ID   BEL-24_SiCu-LTR repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-586
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5021-5021 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 586 BP; 192 A; 103 C; 119 G; 171 T; 1 other;
     tgtgagaaat ggtctttgtt gaatgtattt tttatgatgt atgtaatggg gcatggtgag        60
     accccaccaa aatgtgagta tagcgtggtc gtcggaaaag gcagtgagat ttgcctttca       120
     ccgcaaccaa cggacaaaag tcgagacccg gtggcattct tctgcttcat catcgtcgtc       180
     gtcgtccact tggctcgcag tcttcatcat tcttccaaaa gttggagaga agaacagagc       240
     tgcagcgcac agcaataatt ttagtaaagt agtcagtgga gtatctctcc aaaattgtag       300
     gataattaat agtaaggtag tctccttaca agaattgtaa attgggttta attgtggttt       360
     ttaattaaaa agaagattaa ttaaaacaat aacttaatag ttgcgcgttt attattaaaa       420
     taggccattt taataaagta aatcagcgaa cttagttagc accaccacca cccacaaaca       480
     taattagttt ttcatcatca ccagtcctgc gatacgaaca gagaatcttc tggaatmaaa       540
     ataactactg gctaaatagt ttagggaaac ttggcagtaa ataaca                      586
//
ID   BEL-24_SpEx-I repbase;    DNA;    INV; 6106 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6106
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6904-6904 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           866..6067
FT                 /product="BEL-24_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MGVDDTKNLTELNVKRSSVKGQVTKFRNYLEKISRLD
FT                 TFTTTHRAELTLKLGKFETLFSKFDDLQGQIEIYNSCGLKDELEERENIER
FT                 EFISNIVMAQELLQLHGRDESVHDTSNPHNITHCAVDHSEMGFKLPLIQIS
FT                 KFDGSYFRWMEFRDTFRSLIHENSRITSVNKFHYLISYLEGEAAQTVSNLE
FT                 VSADNYREAWNLLLERYDNKRRLISHHLSALFNINALSKESEKSLRFLIDH
FT                 VTKNIRALSNLGQATEHWDVLIIHLVTSKLDNNTLVKWEEHLNALSTDTTT
FT                 LKELYKFLNNRATVLESLHRNRSDSSFKSNHDKQRSEGHSKKSDHIRQNKA
FT                 CAYIGSSSRLQTQLSSSYLCPCCNADHKIFDCPSFKAKDVSERIAEATKWK
FT                 LCLNCLRSGHPTFKCRFGRCRECNKRHNSLLHLPADTVNNINTPSETLVNC
FT                 NNQGTKCALLCTALIKLVNPKTNKCETVRALLDCGSQSSFISLSLKQRLTL
FT                 EGCPIYAAKVIGFGNNDAGTITEYCIAQLKSLHTPFNVISNFYVMKELTSL
FT                 LPNSVIDIRSFNIPKDITLADPKFYQPSSIDILIGSDLFWDIIGCEQRSIG
FT                 SNYPKLHSSKLGWLIGGPLQHKSLKNIKCNHVLTHFSDDRDIELKLNRFWE
FT                 LEEIPSKSHLSESERACERHFVQHTRRLENGRFSVKLPLIESPNCLGDSYH
FT                 MAKKRFYNLERRFRRQPEVKSQYVEFIREYAELGHLSEITINNLNSNLSYF
FT                 LPHHPVFKENSESTKIRVVFDASARSSSGLSVNDIQMVGPQIQDSLFSILI
FT                 RSRFYKYILAADVEKLFRQILVEESDRNLQLILWREDERQPLKVLRLNTVT
FT                 YGFTSASYLSTRCLWQAGEECEDPLIRKIIQHDLYVDDLITGCNSEEELIN
FT                 IQISVSEALKAACFNLRKYKSNSSRVLKICSENSTDSLIISESSNALGLGW
FT                 NPKSDSLHYSFEIPPTEEKVTKRYILSTSFRIFDPLGFVSPCIIIPKLIMQ
FT                 QLWLDKVGWDEPVSDEIKAAWRKFSDNLSCLATFTLPRQVVCHSPSVTEVH
FT                 SFSDASQRAYGACIFIRSIDEAGIVHVKLLCSKSKVAPIKACTIPRLELCA
FT                 AVLAVRLCKAVVDSLRFPVTRKLFWCDSSVVLAWLHTSSRRLKTFVANRIA
FT                 EILEQSEASCWRYVPTSQNPADLVSRGVYPKELKDCNLWWSGPEFLLQDES
FT                 SWPILPDKPQQELEIPETKSNTVAKLENVSIIPFQKYSQLHKIKRVYAYAL
FT                 RYIHNLRNPRCRRIDTLSLEELQASFYLLCRKAQQESFPVEYELLSKKRTI
FT                 STKSPIIALTPFMDADGLIRVGGRLDASSISFNNKHPILLNSSHHLTKLIF
FT                 ESEHLQKLHAGPQLILASVRQYVWPISGRQLARRTVRNCIKCRREQGKTLT
FT                 PLMGNLPSQRVTVDFPFRSVGIDFAGPFFVSNRKGRGSRITKCYLCIFVCL
FT                 RYKCVHLEAVSDLSKDAFILTLRRFISRRGKPTEIFCDNGRNFVAAAREIG
FT                 SFLKHYRQQITNFFNEEEIKFHFSPAYAPHFGGIWEAGVKSAKHHIRRVMG
FT                 NTHLTFEEISTLFAQVEAILNSRPLYPMSSSPNDLLFLTPGHFLLGRPLTA
FT                 LPSPNLEDCNATQLKRYQRLEQIRQHFWRRWQREYLAELQQRSKWRANDTP
FT                 LKIGDLVLLQEDNIPPLCWRLGRISKLFPGPDGICRVADVQTTQGCYRRPF
FT                 RRLCPLPATEHQIE"
XX
SQ   Sequence 6106 BP; 1787 A; 1340 C; 1226 G; 1752 T; 1 other;
     taattggcga ccgtgacagg acacgatcag gcaatctacg gattttcgag gtctagctgg        60
     agctggccag cactgcgctg caaccataag tcagtcagca ccgcaccgca tccagccctt       120
     ggaagattca agtatcggag gaaggccagc agtacttagc accgccggac tttgatgcta       180
     ctgaatgtag cacgccgcag cgcaggagca ttctgcagct aagtgccctt tccttaattc       240
     ctatacttcc gtttaaagat catagcctac gtccttatcc aattcctata tggtttttct       300
     acttgtgtgg tttcttattt ttaattaggt cacctttgtc aaggttacaa tattggatca       360
     ttcttttcta aatatatgtt tcctacttta tatttccatt gttccgctat tatctagtgt       420
     tattgtcaat tagcaaggca attacgtgcc atatttctaa aattattccc ataaataaaa       480
     taaagggaaa tctcaacgta ccctacataa tcaaagttat taagatagtt ttgttccttg       540
     caatattttt taggaaattt actccacagg ctgccgcgcc tatctagttc gctttaaata       600
     ccattccgcc gaacattcca gaattgcctg agtccccgtg cctggctgag cgacgttgtc       660
     gtagtgtgca gcgcccgcgc agcgtccgag cagcctaagg cggttgcccg cagaccagct       720
     cctgcgaccg cggcctcccg tgcggcagat accaccaaca aggggcgtga gcgtattcat       780
     ttattttatt aattaatttt tctcgagtcc tgtttaaaat tcacacaaat ttaatttcct       840
     tttttgattg aaacaagcta tcatcatggg tgtagacgac accaagaact tgacggaatt       900
     aaatgttaaa cgaagctccg tcaagggcca agttacaaaa tttagaaatt atttagaaaa       960
     aatatcacgt ttagacactt ttactacaac acatagggcg gaacttacac ttaaactcgg      1020
     taaatttgaa accttattct caaagttcga tgacttacaa ggccaaattg aaatttataa      1080
     ttcttgtggg ctgaaagacg aacttgaaga acgagaaaat atcgaaaggg agtttattag      1140
     taatattgta atggctcaag aattattaca actacacggt agggatgaga gcgtccacga      1200
     tacaagtaat cctcataata taacacattg cgctgtcgat catagtgaaa tgggtttcaa      1260
     gcttcctttg atacaaattt caaaatttga cggatcatac ttccgatgga tggaatttcg      1320
     tgatacattt cgatctttaa ttcatgaaaa tagtagaatt acgtcagtaa acaagttcca      1380
     ttatttaatt tcttacttgg agggcgaagc agcacaaact gtttcaaatc tagaagtctc      1440
     tgccgataat tatcgggaag cttggaacct attacttgaa cgttacgata ataaacgtcg      1500
     tttgataagt catcatctta gtgcattatt taacattaat gctttaagca aggaatctga      1560
     aaaatcgtta cgattcttga ttgaccacgt gaccaaaaat atacgtgctc tctccaactt      1620
     aggacaagcc acggagcact gggacgtcct tatcattcac ctagtcacct ctaagttaga      1680
     caataacacc ttagtgaaat gggaagaaca tcttaacgcg ttgtcaacag atacaactac      1740
     acttaaggag ctttataaat ttttaaacaa tcgtgcaacc gtgcttgagt cgttacatcg      1800
     caacaggtca gacagctcat ttaaatccaa tcatgacaaa caacggtccg aaggccattc      1860
     aaaaaaatcg gatcacatac gtcagaataa ggcatgtgca tacattggta gtagtagccg      1920
     actacaaaca caattatcct cgtcgtacct ctgtccatgc tgtaatgctg atcataaaat      1980
     atttgattgt ccatcgttta aggcaaagga tgtgagcgag cgcatagccg aggcgactaa      2040
     atggaaattg tgtcttaatt gtttaaggtc tggtcaccca acgtttaagt gccgttttgg      2100
     tcgatgtcgg gaatgcaata aaagacacaa ttccttattg catctgcctg ctgatacagt      2160
     caacaatatt aacaccccat ctgaaacgtt agtcaactgt aacaatcaag gtaccaaatg      2220
     tgctcttctt tgcactgcct taatcaaatt agtcaatcct aagactaata aatgcgaaac      2280
     agtacgcgca cttctcgact gtggcagtca atcctctttc attagtctaa gcctgaaaca      2340
     aaggttaaca ttagagggct gccctatata tgctgcaaag gtaatcggtt ttggcaacaa      2400
     tgatgcaggt actataactg aatattgcat tgcccaatta aaatcgttgc atacaccatt      2460
     caacgtcata tctaactttt atgttatgaa ggaactaaca tccttacttc ccaattcggt      2520
     aatagacatc agatcgttta atattcccaa ggatattacc ttggcagacc ctaaattcta      2580
     tcagccttcg tccatagata ttctaatagg ctcagattta ttttgggata ttataggttg      2640
     tgagcagcgg tcaataggtt ccaattaccc caagttgcac agctcaaagt tgggctggtt      2700
     gattggaggc cccctgcaac ataagtcact caagaatatt aaatgcaatc atgtacttac      2760
     ccatttttct gacgataggg acatagaatt aaaattaaat cgattttggg agcttgaaga      2820
     aatcccatct aagtcccatt taagtgaaag cgagcgggca tgtgaaaggc attttgtgca      2880
     gcacactcgc cgcttggaaa acggcaggtt ttctgtcaag ttgcctctca ttgaatcacc      2940
     aaattgtctc ggtgattcct atcacatggc caagaaaagg ttttacaatt tagaacgacg      3000
     atttagaaga cagcccgaag tcaagtcgca atacgttgag tttattcgag aatatgcaga      3060
     attaggtcat ctttctgaaa taacaataaa taacttaaat tctaacttgt cctacttctt      3120
     acctcatcat cctgttttta aagaaaacag cgaatcgact aagattcgag tagttttcga      3180
     tgcatcagct cgcagctcct caggcctgtc tgtcaacgac atacagatgg tggggcctca      3240
     aattcaagac tctcttttct ccattttgat tcgatctcgt ttctataaat atattttagc      3300
     agcagacgtg gaaaaattat ttcgtcagat attggtagaa gaatctgatc gaaatcttca      3360
     gcttattcta tggagagaag acgagcgtca gcctctcaag gtgttgcgtt taaatacggt      3420
     gacttatggg ttcacaagcg caagttattt gagcacacgg tgtctttggc aggcgggcga      3480
     agaatgcgag gatcctctta ttaggaagat tatacagcac gatctatacg tagacgactt      3540
     gattacgggc tgtaactctg aggaagagct tataaatatt caaatttctg tgtcagaagc      3600
     ccttaaggca gcatgtttta atctaagaaa atataaatct aattcctcta gggttcttaa      3660
     aatctgttct gaaaattcta cagactcact catcattagt gagtcctcaa atgctctcgg      3720
     tttagggtgg aatcctaaaa gtgatagcct acattattct ttcgaaattc cacctactga      3780
     ggaaaaggtt acgaagcgct atatcttgtc aacatcgttt cgaatctttg acccactcgg      3840
     tttcgtcagc ccatgtatta tcattcctaa actaataatg cagcaacttt ggcttgacaa      3900
     ggttggctgg gacgagcctg tttcagacga aataaaagca gcttggcgta agttttctga      3960
     taatctatct tgtctagcta catttacact gccaaggcag gttgtatgcc actcaccttc      4020
     tgttacagag gtccattcct tcagcgacgc ctctcaacgc gcctatgggg cttgtatttt      4080
     cataaggtcc attgatgagg caggtatcgt gcatgttaag cttctatgct ccaagtctaa      4140
     ggtagcacca atcaaagcct gtaccatacc tcgtttggag ctgtgtgcag cagtgttagc      4200
     tgtcagactc tgcaaggctg tcgtcgattc tttaagattt cctgtaacac gcaaattgtt      4260
     ttggtgcgac tccagcgttg ttcttgcttg gctgcatact agttcwagaa ggctgaagac      4320
     tttcgtggct aatagaatag cagaaatact ggaacaatca gaagcttctt gttggcgtta      4380
     tgtacctacc tctcagaacc ccgcggatct cgtttcacgc ggcgtgtatc ctaaggaact      4440
     caaagattgt aatttgtggt ggtcagggcc cgagttttta cttcaagatg agtcttcttg      4500
     gcctatatta ccggataagc cccagcaaga gttagaaatt cctgaaacaa aatcgaatac      4560
     tgttgctaag ctggaaaatg tttcgatcat cccattccag aaatatagtc aattacataa      4620
     aataaaaagg gtgtatgctt atgcattaag atatattcat aacctgcgca atcctcgctg      4680
     taggcgtatt gataccctta gtttagaaga attacaagct tcattttacc ttttatgccg      4740
     caaggcccaa caggaatctt ttcctgttga gtacgagctc ttatctaaaa aaaggacaat      4800
     tagtacaaaa tcacccatca tagcgcttac acctttcatg gacgcagatg gattgataag      4860
     agtaggtggc cgtttggacg cttcatctat ttcattcaat aacaaacacc ctattctact      4920
     taattcctct caccatttaa caaaattgat tttcgaaagc gaacacctac agaaattaca      4980
     cgctggtcca caactcatcc tcgctagtgt caggcaatac gtgtggccta ttagtgggcg      5040
     gcaactcgcg aggagaactg tgcgcaactg catcaaatgt agaagggaac agggcaagac      5100
     tttaacaccc ttaatgggta acttgccttc acagcgcgtt acggtggact tcccatttcg      5160
     tagtgtcggt atagactttg ccggtccctt ttttgtctca aatagaaagg gccgcggatc      5220
     tagaattaca aaatgctatc tctgcatttt cgtctgctta cggtacaagt gtgtacactt      5280
     ggaagcggta agtgatcttt cgaaggacgc tttcattctt accttacgca ggtttatatc      5340
     ccgtcggggt aaacctacag agattttttg cgacaacggc cgtaattttg tagccgctgc      5400
     cagagaaatt ggcagctttt tgaagcatta tcgacaacaa ataacaaatt ttttcaacga      5460
     agaggaaatt aaatttcact tttcaccagc ttacgctcca cactttggtg gtatctggga      5520
     ggccggggta aaatccgcca aacaccatat tagacgtgta atgggcaaca cgcatttgac      5580
     atttgaagag atatccacac tgttcgcaca agtggaagcc atactaaata gtcgtccact      5640
     ttaccccatg tcctcctcac caaatgatct ccttttcctt acaccagggc acttcctgct      5700
     tggacggccg ctaactgcgc tgccttcacc gaacctagaa gactgcaatg ccactcagct      5760
     taagcgctac caacggcttg aacagatccg gcaacacttc tggagaagat ggcagaggga      5820
     gtacctggcg gagctacaac aaagatctaa atggcgggct aatgatactc cactgaaaat      5880
     cggcgaccta gtgctgcttc aagaggacaa cataccacca ctttgctggc gactgggccg      5940
     aatcagtaaa ctttttcccg gtcctgatgg aatatgtcgc gtagcagatg tccaaacaac      6000
     acagggatgt taccgaagac ccttcaggcg actctgcccc ttaccagcga cggaacacca      6060
     aatcgagtga gagttaaaag ccgcagtctt ttaacggcgg ggaaga                     6106
//
ID   BEL-24_SpEx-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-24_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-306
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6932-6932 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 306 BP; 90 A; 57 C; 49 G; 110 T; 0 other;
     tgtttgcgcg cctaggactt ttgtgacttt ttcggacaat tcgtgtcaat gtgctatgtg        60
     gtcttgatca ggcgctcata agcgtcggta gttctcaaaa taatttaatt agttatagaa       120
     aaatccctac cttacatttt agttataatt tctttgttca gattcaacat agattcttta       180
     agacagcagt ccacattatt aattcattcg cctttgtaac aacaagatta gtcaaaatta       240
     aatcacaaca tatcaagtat tttatagttt tattgagcat ccagctccag tgtctcgcag       300
     tagaca                                                                  306
//
ID   BEL-250_AA-I repbase;    DNA;    INV; 5909 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-250_AA_;
KW   BEL-250_AA-LTR; BEL-250_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5909
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2508-2508 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4896-5477] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4233..5831
FT                 /product="BEL-250_AA-I_1p"
FT                 /translation="MLQQKEDNYVPSDVPTFSDEQLEIKDPTYCQLAVHPE
FT                 RWELLSRYSSFRKLQRIVAYLYRFVNNCRNKKTQRVTGILTVSELRSATSS
FT                 IIWKVQREDFAEELQMLQSGKTRKSKLLQLAPFIDSDGLLRVGGRLRHAKV
FT                 PFQRKHQLLLPYEHHVSKILIESLHKEHLHVGQQGLLAIVRHRYWPIKGKI
FT                 IVRQVVKKCVRCFRMKPPEIEQFMGNLPDYRVVPAPAFAKTGIDYAGPIYI
FT                 KQGRRQMRVKAYIALFICMSTKAIHLEVASDLTTEAFLATSQRFIGRRGTP
FT                 EQLYSDNATNFCGAQSELSELYQLLKTQQATDKINQYCEAKEIQWSFIPPR
FT                 SPNFGGIWEAGVKAAKSLLKKVLCETSLTYEELTTVAVQIEAILNSRPMTQ
FT                 LTSDPNDLMALTPAHFLVGHELTAPPEPNYEEVRVSSLSRWQYLRRQKQMF
FT                 WARWSSEYLNELQPRGKWYKEKLVIKPGMLVVLREENMAPQQWHLGRIVQI
FT                 HPGSDNIVRVVTVRTSTGEVKRAIGKIAVLPIEDNAL"
XX
SQ   Sequence 5909 BP; 1598 A; 1331 C; 1606 G; 1352 T; 22 other;
     tttttggtcc aaaattcgaa ccggatcgtc tccgggagtg ttctccgcgc gtagaagccg        60
     gaattcgttg tgaagatcgc attactcctg cgggaaatgc gatttcgtgt tcgcgcatcg       120
     caacgagctg catccggacg cgatttgcat tgtgtgcttg aggttcttaa cctcgattcg       180
     ttcgcttcca caacgagtgt ggaacgctcc gacttttgcg gaagttgcgg tctgttgcgg       240
     agtgagaaga agcaccgact tccgtgaaag ccggtcggac atttgcgtga gtgaaacaga       300
     agcaccgtcc ttcgttggac tggtcaaaca ttagtgagtg aaaagcaccg gccatccgtg       360
     aatgccggtc gaacaaagtg agaagtgaga aagttgctcc gccgtcgtga ggcgaggacg       420
     agctgaaaaa aaataaaaaa agggaagtga gatgaacgaa gaaaatgtac ttttactacg       480
     ccttcgggaa aacgcagtag aaatgtgatg cattctccga acgacgagaa gaaaaagaag       540
     caggaacaac gacggctgaa attaacgatg catgccctga ctgcgcgccg gaattccgtg       600
     cgtcgcaaag ctgcagcgaa tgaaggatac ggtgggtcaa gctgggtaca acagcgatta       660
     ccacctcgaa acgtacttga gacgtgtcga ttatacgacg aatacaacac gattcggaat       720
     aaggcgtacg tcgagattcc cgatcagcga acggaacaag agcaagaatt gcaataattg       780
     aattattctt catcgaattt gagattgcct acgaggatat tcgagttgaa ctttgtcaag       840
     caattgatgg gctccggaaa aatgacgatc ctactaagct ggcagtcgca gaagttgttc       900
     atcagcagcc aaccgttgtg aatcaatttc ccggattgcc aaacgtcccg cctaccaatt       960
     tttgacggtg cgtatgagaa gtggttccgc tttaaacaac tgttcgaaga actcatgcaa      1020
     aagcatccac atctctcgga tgcgaccaag ctacattacc tgcagcaatg cctgaagggg      1080
     aaggcggaaa gcgtgcttag tgaccagatc gtgaacgaaa acaatttcca gatcgcctgg      1140
     cacgcactcg aggaacgctt tgaaaatcaa aggaccatcg tcgatgtgca catcggagga      1200
     ctattaaatc tacggaagat gtcgagagaa tcgtctagtg aattgcgcca gctcctcgat      1260
     gattgcagtc ggcatgtaga tgcattgaag ttccatacac tgccgatgca gggaatgtca      1320
     gaacaactgg tgatttccct tctaacatgc aaactccaca atgcaaccgc agctttgtgg      1380
     gcgaacatcg tacaaccaaa agagcttccg aaataataag gggaccctac aattcctgca      1440
     taatcgttgt ttcgttttgg agcgctgtga ggctaaatcc aagtgcaagt atgtggaagc      1500
     gagaaagccg aagacgctcg ttccagctac gaaacccatg cagcgtgtac attccgtgca      1560
     atcagctgaa gatgtgtgct ccatttgcga tggcagtcat agtgtgaaca agtgtgatgt      1620
     gctgaaggag atgccaatga ccgacaggat tgcgaaggta aaggaacggc agttgtgttt      1680
     caattgcatg aaacgtggcc atcgtgtcgg gcaatgcaga tcacgagcgt gtacggtcag      1740
     cggctgcgga aaacggcacc ataccttgtt gcattatgtg aacgtcccac aggagcagcc      1800
     ggttccgact ggaatcgccg aagagcaaaa aggcattcac agtcaacaat cggaacagca      1860
     caccgactaa gcaaacccca cggtttcgaa cgtcagcact gtaatgtcgt cgcaacgagt      1920
     tggtgaaaag caagtacttc tttcaaccgc tgttgtggng gtgcaagatg ccagcggaac      1980
     gtatcnctta tgtcgtgcgt tattggactc gggatctcag tcaaactttc tcaccgagtc      2040
     tgtcgtccga caactacggt tgcagcgtga acgagttcga gctccagtga tcgggattag      2100
     tggagaaaag cgtattgtag cgcatcaagc agttgcacga gtcaagtccg cccaacaaga      2160
     tgctgtttgg actctcgagt ttttggtggt ctcgcaagtt accggttgtc ttccaacgcg      2220
     tacgttggac atatcagagt ggcaaattgc atcggatgtg cgtctagcgg atccaaggtt      2280
     caacgctcct gcgaaggngg atatgctcat aggagcagag ttgtttttcg agttgctgtc      2340
     gtcggagcgt ttgaaggtta aggattgcca aattatgtta tggaacacca agcttggatg      2400
     gattgtgagt ggagcgtttg cgagtatcca gcgaacggta gcggtatcca acgttgcttg      2460
     cctggaagca tcggattcga acctaaacag tctggtgcaa cgcttttggg accaggagga      2520
     agnttcggat gcggcgaagg agaacnctga agaccgacag tgcttggacc atttcgccaa      2580
     aacacaccgt cgcgaagaag gccgtttcgt agtacgtcta cccttccggg acaacttgan      2640
     tcagttgggt gagtcccgtg ccacgactga gagacgattc catcagttgg agagaaggct      2700
     caacntgaac gccgnacnca ngaagcagta ctccgcgttc atgagtgagt acataaacct      2760
     gggacactgt gtgaaggtcg atgacactng taccgccgga ttctacctgc cgcaccatgc      2820
     aatcgcaaaa ccctcaagct cgtcaaccaa gctacgcgtg gtgtttgatg cgtcggcacg      2880
     atcggatacc aacgtctcgt taaacgacgt gctgatgagc ggacccgcga tccaagacac      2940
     ccttgcagcg gtagttctac gttcccggaa gtacaagttt ctgttttctg ctgacataat      3000
     taagatgtcc cggcgggtgc gagtggatgg cagggattcg tgctatttga gagtgctgta      3060
     cagagnagac ccacatgcga agctggacac tctcgaattg aagacggtca catacggaac      3120
     gtcatgtgcg ccgttttgtg caaccgcttc tttaaggcag tcggccatac ggatgatgga      3180
     gaagcgttcc cggtcggagc tcgagttgtg caacaggact tctatatgga ggatgcaata      3240
     accggagcaa atagtattga agaagcatta gagtgtgagt cgcagctcat tgcactactg      3300
     gagcgaggng gcttcgagct ccacgagtgg tgcgcgaacg ctccggagct gttagaacgt      3360
     attccgaaag acaaagaaca gggagcagca agtgaaaatt gaagatcagg agttcaacga      3420
     tgtgattaag accctggggc tcctgtggga tgcgtcggca gacgtgttct tgtttcggat      3480
     gcaaagcagc gatgagtctc cggagttcta cacgaagcga cttgttctgt cggagaccgc      3540
     aaagattttt gacccgctcg gtctgcttga accggtcaca gtgcaagcga aactgttcat      3600
     tcagcaactg tggtcgttgg agttgagttg ggatgagccg cttcctgctg agctggagat      3660
     ggcgtggaga agattcaagg atcagcngca gcacataaat gggatcaaaa ttccgcgcag      3720
     ggtagtagcg gacgacgccg attcgttcga aatgcacggg ttttcggatg caagcaagaa      3780
     ggccttcgga gcttgtgtgt acatgaggag tgtcaagatc aagagtgacg ggtcttcttc      3840
     aatgcatttg ctcagcagca aaactcgtgt tactccgtta cctgctcaaa cctggaagta      3900
     agaaggcang aaggccgtac actgcgccga gagctgaatt atgcggcgct gccttgttgn      3960
     cgaagcttgt tacaactgta ttgaaggctt nggacatgga ggttgataag gtgatgctgt      4020
     ggtgcgactc gcaaatcgta ttntgttggc tcaacaagcc ggcagccaat ctagaagtct      4080
     tcgtgggtag cagagtncga gagatcaagc aattgacaan naactacgag tggcgctatg      4140
     tcagnacaaa cgacaatccc gctgatatag cttctaaagg aattgttctt gcggatctgc      4200
     agtactcgaa tttctggttg aacgggcctg taatgctcca gcagaaggaa gataattacg      4260
     tgccttcgga tgtacccaca ttcagcgacg agcaactcga gatcaaggac cctacctatt      4320
     gtcaattggc cgtgcaccct gagcgatggg aactactgag caggtacagc agcttcagaa      4380
     aattgcagag gattgttgct tacctgtacc gattcgtcaa caattgccga aataagaaga      4440
     ctcaacgggt gactggaata cttacggtat cagaattacg tagtgcaaca tcgagtataa      4500
     tctggaaggt acagcgagaa gattttgccg aagaactaca aatgttgcag agtggcaaaa      4560
     caaggaagag taagctgcta cagttagcac cgttcatcga cagcgacgga ttgttacgag      4620
     tcggtggtcg ccttagacat gcgaaggttc cattccaacg aaaacatcag ttgctgttgc      4680
     catatgaaca tcacgtcagc aaaatattga tcgaatcgct tcataaggaa cacctgcacg      4740
     tgggccaaca aggtctgctt gccatcgttc ggcaccgtta ctggccgata aagggaaaga      4800
     tcatcgttcg ccaagttgtg aagaagtgtg tgcgttgctt ccggatgaaa ccgccggaaa      4860
     ttgagcagtt tatgggaaat ttgccggact accgcgttgt acccgctcct gcatttgcca      4920
     aaaccggcat agattatgca ggtcccatct acatcaagca aggtcgtcgc cagatgcgtg      4980
     tgaaggcata tattgctctc ttcatttgta tgagcaccaa ggccatacat ttggaggtag      5040
     cctccgatct cacaacggaa gcatttttgg ctacatcgca gcggttcatt ggtaggcgag      5100
     gcacgcctga acaactttat tcggataatg ctacaaattt ttgcggagca caatccgaat      5160
     tatccgaact ataccagctt ttaaaaacgc agcaggctac cgataagatc aaccagtact      5220
     gcgaggcaaa ggagatacaa tggtccttca ttccgcctcg ctcgcccaac tttggcggga      5280
     tatgggaagc gggagtgaag gcagccaaat cgttgttgaa aaaggtccta tgcgaaacat      5340
     cattgaccta cgaagagcta acgacagtgg ccgtacaaat agaggcgatt ctcaattcgc      5400
     gtccgatgac tcaactgaca agcgatccaa acgatttgat ggcgttgacc ccagctcact      5460
     ttctggttgg acatgaactc acagctccac ctgaaccaaa ctacgaggaa gtcagagtgt      5520
     cgtcgttatc ccgttggcag tatcttcgga gacaaaaaca aatgttttgg gcaaggtggt      5580
     catcggagta tctcaacgaa cttcagccta gaggtaaatg gtacaaggag aagttggtta      5640
     tcaagccggg aatgcttgta gtcctgcgag aagagaacat ggcgccacag caatggcatc      5700
     tcggacggat tgtgcagatt catcctggtt cagacaatat cgttcgagta gtcactgtga      5760
     ggacatctac tggtgaagtg aagcgggcga tcggaaagat tgcggttcta ccgattgagg      5820
     ataacgccct gtgagattgt tggacactgc gtgccaaccg gggggaggat gttaataatt      5880
     aaatcgatat tttgcgcaga agcgcccat                                        5909
//
ID   BEL-250_AA-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-250_AA_;
KW   BEL-250_AA-I; BEL-250_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-128
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2509-2509 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 128 BP; 42 A; 26 C; 24 G; 36 T; 0 other;
     tgctttatat aaatgtcacc caatgctaaa taaacgaaca ttgtcattgt tgagttagta        60
     accgagaaga gcaacgtgtc ttttatttct cccgagcaaa actcccggaa taaccagtag       120
     tgtggaca                                                                128
//
ID   BEL-251_AA-I repbase;    DNA;    INV; 3598 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-251_AA_;
KW   BEL-251_AA-LTR; BEL-251_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3598
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2510-2510 (2012).
XX
DR   [2] (Consensus)
XX
CC   'TCCAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1329..3020
FT                 /product="BEL-251_AA-I_1p"
FT                 /translation="MPSTTSAARKNPAMRTLKASLRSLLSMFQDICRFVDT
FT                 LGEVASATQVSVRLEKLDELWEKVNGVILEIETHEEFTEEDEIYSERRSEF
FT                 SNKYFDIKSLLMDKVKELEETHRLNQSIQNQNSTVQPTIEHVRLPQIMLQT
FT                 FDGNIDQWLSFRDLYTSLIHLKPDLPDVEKFHYLKGCLAGEAKALVDPLAI
FT                 TKANYQIAWDILTKRYNDSKQLKRRQVQALFSLPKLANESATELRSLLEGF
FT                 ERTVRTLDQLVQPGDYKDLLLLDILCYRMDPITRRCWEEFSSTIEQDTIKD
FT                 SIEFLQRRVRVLESLPVKLSNDNPEFSLPESEQSNFQTSYSLVQPTIRSCA
FT                 ACYGEHFLYQCPTFQLMTVTDRDKILRTNALCRNCFRRGHRAMDCHSRNVC
FT                 RNCKGKHHTLLCFQPSTFNVENRSPSQRTSAASSSTQSPGRPKIPHGTPTL
FT                 VESGCDERLQQSRFVTGNMATCSRGLRTRFVHLRDSRCPNIFSQKQSNPQQ
FT                 KQTSKILHAGRKSESTQIPVKRLAINGQVGYSRTVKAMTRRPDGQYLWTVP
FT                 CQPSSIGVTNPIIKQKL"
XX
SQ   Sequence 3598 BP; 1095 A; 812 C; 842 G; 849 T; 0 other;
     ttggtccttc gaaccggatc ataggaagga ttccacgaag tccaaacgcc attacacaac        60
     acccgaagaa agatagttgg cgcaatttat tgcctcaaca agccaataaa tcaccatcgc       120
     aaaactacat caaacgaagg aagcactcac cgtttttcca acagaaattg atctagcgcg       180
     agatcaatca ccatcatccg tattactgca gaacgaccaa atccaatagg aatactgctg       240
     atcatccaac agcacaacga acaccactct gttgtggtat catcactata ggaaacattc       300
     caaataggcc tttgccttgg ttcgtccagg taattaacac tgaacacagt atatgtcctg       360
     ccgttgcgga ccactttggt tgctacccta attatttctt atccgcaatg aatcaaaaca       420
     caaccgagga actacgagag gcaatcagcg agcaagcata atcaaaacaa acgattggat       480
     tatcactggt ttgcgaggat cattttctgg tcgccaccgg tgggagagtg attgaaatta       540
     aagcactatt acaccttcac cgtttccaat tgaggcctac agccaaggga attgtccatt       600
     acatcctttg agagaagcta cattccatcc aacggtgacg accaacggca actaatgagg       660
     cgataatcaa acactgcgcg acgatcgacc ggagagaacg atcaaaacaa caaccaccga       720
     cgaagacgaa atcgtacaac tgtctgcgat tgcgatcgac tgggacgatt ggtgtcagcg       780
     ggctgctttt tttcacaggt cagtgctaat tatattacac caatatgtat atgtcttgcc       840
     ggagcgggag tagatagata gctacatttg ctcttttctt ttgtgcacgt ggatgtgttc       900
     attcaactat tttcgtggag cataatcgag gggcccgcaa atgcgattat tcgattaatg       960
     tgtccactat tgaggaaaaa cagtttgtga accgtaatat tccggcacac tgttaattgg      1020
     acaatttgag gcgcagaaac agccttccca ggttagttga acggtatatg tcttgccaaa      1080
     gttggatgcc acataatact acacatattt tcccatctca tatgatgcct tggacgttta      1140
     ttgggagttt catcgtcaac cgttttggat ctgctttagg acgtacctgt agagagggtg      1200
     gaaattcctg cttgttcagg taaatataag aattactcta cagtgtgtgt ctagccgagg      1260
     ctaggattag cagagttata catccacgtt ttcttgtgtc caacactttt cgagcataca      1320
     tcacgaagat gccatcgacg acatccgctg ccaggaagaa tccagccatg cgaacgctaa      1380
     aagcttcgtt gcgatcactc cttagcatgt tccaggatat ttgtaggttt gtggatactt      1440
     tgggtgaagt ggctagtgcc actcaggtgt cagttcggct agagaagctg gatgagttat      1500
     gggaaaaggt gaatggtgta attctggaaa tcgagaccca tgaagagttc accgaagagg      1560
     acgaaattta ttcggaaagg cgatcggagt ttagtaacaa gtacttcgac atcaagtctt      1620
     tgctgatgga caaggtgaag gaattggaag agacccaccg gttgaaccag tcgatccaaa      1680
     accagaattc gaccgtgcaa ccaacaatcg aacacgtgcg cctaccgcaa atcatgctgc      1740
     agactttcga cggcaacatc gatcaatggt tgagcttccg cgacctgtac acgtcgctaa      1800
     ttcatttgaa gccggatttg ccggatgtgg aaaagttcca ctatttaaag ggatgtttgg      1860
     caggcgaggc caaggcgttg gtggacccgt tggcgataac aaaggctaac taccaaatcg      1920
     cttgggacat tttgacgaag aggtataatg acagcaaaca gctgaagcgg cgacaggttc      1980
     aggcgttatt cagcttaccg aagttggcta atgagtcagc taccgaatta cggtccctac      2040
     tggagggatt cgagcgaact gttcgaacgt tggaccagct agttcagccc ggtgattata      2100
     aggatttgtt gctactggat atcctatgct atcgcatgga tcccataacg aggagatgct      2160
     gggaggagtt ctcttcgact atagagcagg ataccatcaa ggattcgatc gagttcctac      2220
     agcgaagagt cagagttctt gagtcccttc cagtgaaact atcgaatgat aatcccgagt      2280
     tctcgctacc ggaatcagaa cagtctaact tccaaacgag ctacagtcta gttcagccaa      2340
     caatccgaag ctgtgcagca tgctatggag aacactttct ctaccaatgt ccaacattcc      2400
     aactgatgac cgtaaccgat cgtgataaga ttttgcgaac caacgcactt tgccgaaatt      2460
     gttttaggcg aggacatcga gcgatggact gtcattctcg taacgtgtgt agaaattgca      2520
     agggcaagca tcacacgctg ctgtgctttc aaccatctac cttcaatgtt gaaaacagat      2580
     caccatccca acgaacttct gcagcgagca gtagtaccca atcaccaggg aggccgaaga      2640
     ttccccatgg aacgcctacc ctggtagagt ccggatgtga tgaaagactg caacagagca      2700
     gattcgttac tggtaacatg gcgacatgtt cgagaggatt acggacccgg tttgtccatt      2760
     tgagagactc gagatgccca aatatatttt cccagaagca gtcaaatcct caacagaagc      2820
     agacatcaaa aatattgcat gctggaagaa aatctgaatc tacgcaaatc ccagtgaagc      2880
     gacttgcgat caacggacag gttggctatt ctaggacagt caaggccatg actagacgtc      2940
     cagatggaca atatctttgg actgtaccat gccaacccag tagcataggc gttacgaatc      3000
     caattatcaa acagaaattg taaaagaaaa gagaagctca cctagatcca gcaatgaaga      3060
     gccgaggact aatctggaat ccgtaatatt ttggaatacc aaggcgaatc gaatcaaggt      3120
     ttcaatgacg agaaacaagt agaatggaca ttgcacgaga tgaagccaag aagcgtggaa      3180
     tcccccggga gattggtatg agatgcagag gtcaccttaa ccgctaagaa gaatgatgac      3240
     caacccaaac aaccctgtga tggccaagct gaacatcctg gaatccaaac caaacttaat      3300
     tcaggaagga ggaagagcct gcggaagcag acatccaaag gaaagcgtag aagaagacga      3360
     ccagcccaca ggtttacgag aaaatgtagg acttgatttt cgaggtttca tcgggagaaa      3420
     ggaatgatgg tcaacccaat caaacgaccg agtgatgacc aaacccatgc agagaaggaa      3480
     gaagaacctg caaatgcaga ctacccgaac gaaaacgatt gttccgtcca cagtgcacga      3540
     gagatttgtt cttttcttat cttttcagaa atcccagata tttcagggcg ggcgggga        3598
//
ID   BEL-251_AA-LTR repbase;    DNA;    INV; 434 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-251_AA_;
KW   BEL-251_AA-I; BEL-251_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-434
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2511-2511 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 434 BP; 139 A; 85 C; 104 G; 106 T; 0 other;
     tgttcgagtg tcgtgtcaca tcgacgaacc tctcggtgca gcatagatcg tcacgggtgg        60
     tgaatgaaag gcaacggaag gccgatgacg taacggttcg tatcgcgcac ccaattatcg       120
     aagttcagtc aagaataagt cggcaaatag ctcgcacgga tcgagaaacc aaatctaatg       180
     gaaatgatcc caaatccaac tttatgtagt ttaatgtagt gtaataaatg ttgtagttgt       240
     ttgaataaaa gtgtttgatg taatgtgtac tggactaaaa taattgtgta attgtgaaag       300
     gatgtgttaa gttttgtgga agcccccggg gagaccgcca aaataatttc gctggacgtc       360
     tacctcagcc accaaaagga atcgctacca aatacagtcc actctaagga aggaaaagga       420
     ccagctccca aaca                                                         434
//
ID   BEL-252_AA-I repbase;    DNA;    INV; 5852 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-252_AA_;
KW   BEL-252_AA-LTR; BEL-252_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5852
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2512-2512 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4895-5455] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..4219
FT                 /product="BEL-252_AA-I_1p"
FT                 /translation="MAFQTPEDGNERLATCLMCGGPEDDDFNMVSCNECKM
FT                 WAHFKCAEVTDEVKNADWFCQECTKSRETYLRVSKKRTSKKGSTKSGVDSI
FT                 RSGGSSVAAHVAEIEEELRARESALSDQMALRSKRLEMTRIWNEKQLRMEK
FT                 EMREKELELEKQMHELQLKQERELLDRQLAAEREFIKRRDSIRQEVQSSKD
FT                 KVQNWLTQRKQSASSPKKDFRGAYPKGPVPETGTVRTSTNDMRQETDSDDD
FT                 YSEESELEEERRTILDGSLGLNGSRRNGPGLQIARVTKEQLAARQAVSKHL
FT                 PTFKGEPEIWPLFISSFEYTTQACGFSNIDNLKRLQDSLQGDALEAVRSRL
FT                 VLPEAVPDVIRDLRNLFGKPEKLLKTLMMKVRNASPPKVDRLESFIHFGIT
FT                 VKQLCDHLEAAQLKDHLNNPMLVQELVEKLPPSYKLDWVRFKRGKNDTPLR
FT                 MFTDFMTDIVSDVSEVSDFTDWSHNDVARSGKEKCRKKEFIHLHNSESKKG
FT                 IMSLPASPGKPCWICKRTDHKIRYCDDFKRMNVAERIKAVEKLKLCNLCLN
FT                 SHGNSRCTFKLRCSVKDCGGNHHYLLHRREESVQLMEVGCNAHKNLSRGVI
FT                 FRMVPVTLFAGNLSLQTLAFLDEGSSSTLVDEVVAKRLKLTGELEPLIVTW
FT                 TGGIKRHENCSRKIRFMLSANGCEKQFTLDDARTVSELMLPKQCVRFSEIT
FT                 ARYPHLSDLPVADHSLEDPKILLGLNNLHLFAPLESRVGNPGEPIAVRSAL
FT                 GWTVYGPEIHRSTTETFVNLHSIKPASNQELHDLMRAQFVLDEVGVTSFGV
FT                 PESAEDQRARTILQETTVRIGDRFQTGLLWREDVRQFPDSFPMAFRRLKAL
FT                 ERKLEKNSLLKENVLMQIEEYQAKGYAHQATTEEIAEIPSSNVWYLPLNVV
FT                 LNPRKPDKIRLVWDAAASVDGVSLNSELLKGPDMLVSLPEVISHFRERPVA
FT                 FGGDIAEMYHQIRIRPEDKSAQRFLFRTNPDKDPQIFVMDVLTFGSTCSPS
FT                 SAQFVKNLNAEQYTTEFPEATNAIIRRHYVDDYFDSTNTVDEAIKRAKEVQ
FT                 YIHAKGGFCIRNWVSNSRAFLEDMGEREACRKVHFSHDKDNEYERVLGIVW
FT                 EPLHDVFSFAASSVAGIQQRDGESDHPTKRMVLSRVMALFDPLGLLSPFTV
FT                 RGRMLVQDLWRTGCGWDECIDDESFQKWQRWSKRLHDIETFKIPRSYFGKN
FT                 RSDEIENLQLHIFTDASETAYGCVAYFRAVIRGQIECVLVMSRSKVAPLKQ
FT                 LSIPRLELQGAVLGARLARTVHENHSYTIGKQFMWTDSQTVLSWIRSDQRR
FT                 YRQFVGFRIGEILSLTKLSEWNWIPSKMNAADQLTKWGNDVELLSDSSWIR
FT                 GPPFLYQKEEEWPKKNLPPANTMQELRANLLL"
FT   CDS           4811..5851
FT                 /product="BEL-252_AA-I_2p"
FT                 /translation="MKDCVWCKVHRNRPQPPRMAPLPVQRLTPNLRPFSYV
FT                 GVDYIGPFEVSVGRRVEKRWIVSFTCLVVRAVHVEVAYSLTTQACLMAIRR
FT                 FVCRRGSPCEYFSDNGTNLKGASKEILSTVSNIGFDCAEEFTTARTKWTFN
FT                 PPAAPHMGGGVWERLVRSIKEALEVLNDGRRLTDEILQTSIIEAEDMVNSR
FT                 PLTYVSQQSVEMGALTPNHFLRGVSPNEPNATPPTTNLSATLRDSFKRSQY
FT                 LADEMWKRWIHEYIPTVNQRTKWFEEKRQLKAGDLVYVVEGLNRKSWVRGI
FT                 VEAPIVSSDGRVRQAWVRTKGGLFKRATVKLAVLEIGCSNTGPDVNEGPEL
FT                 RAGE"
XX
SQ   Sequence 5852 BP; 1756 A; 1207 C; 1467 G; 1420 T; 2 other;
     aaatcaaaga gttacgcaaa cctaacctca aagcatggct ttccagactc cagaagatgg        60
     taacgaacgg ctggcgacct gtttgatgtg tggtggacca gaggatgatg atttcaacat       120
     ggtgagttgc aatgaatgca agatgtgggc tcatttcaaa tgcgccgaag taacggatga       180
     agttaaaaat gccgattggt tctgccaaga gtgcaccaaa tctcgcgaga catacttgcg       240
     ggtctcgaag aaaaggacct cgaagaaagg gtctacaaag agtggagttg attcgatacg       300
     gagcggaggt tcttccgtcg ctgcacatgt cgctgaaata gaagaagaac tacgtgcgag       360
     ggagagtgct ctatcggatc aaatggcact cagatcgaaa cgtctggaga tgacccgaat       420
     ttggaatgag aagcagttac gaatggagaa ggaaatgcgt gagaaggaac ttgagttgga       480
     gaaacaaatg cacgagctcc agctgaaaca ggaaagagag ctgttggatc gtcagctggc       540
     ggccgagcga gagtttatta agagaagaga ctcaattaga caggaggtac aatccagtaa       600
     agataaggtt caaaattggc tcacgcagcg aaagcagtcg gcttcgtcac cgaaaaaaga       660
     tttccgtgga gcgtatccaa aaggaccagt tcctgaaacc ggaactgtaa ggacttcaac       720
     gaatgacatg agacaagaaa ccgattcgga tgacgattac agtgaagaga gcgagttaga       780
     agaagagcga aggacgattc tggacggttc actagggttg aatggtagca ggagaaatgg       840
     gccggggctg caaatagctc gagtgactaa agagcaactg gcggctagac aggccgtgtc       900
     gaagcacctc ccgacgttca aaggagaacc agaaatatgg ccccttttta tcagtagctt       960
     tgagtatact actcaagcct gtgggttctc gaatatcgac aatctcaaaa gactgcaaga      1020
     cagtttacaa ggagacgctt tggaagcggt aagaagccga ttggttcttc cagaagcggt      1080
     accggatgtc atacgagatt tgcgtaatct tttcggtaaa ccggaaaaac ttttgaaaac      1140
     gctgatgatg aaagtgcgca atgcttcacc acctaaggtc gatcgcttag agtcgttcat      1200
     ccacttcgga ataacggtaa aacagctttg cgaccattta gaagctgctc agttgaaaga      1260
     tcacctgaac aacccaatgt tggttcagga acttgtagaa aaacttcctc caagctacaa      1320
     attagattgg gtaagattca aacgaggtaa aaatgacacc ccgctcagaa tgttcaccga      1380
     ctttatgacg gacatcgttt ctgatgtgtc ggaagtttcc gattttactg attggtcgca      1440
     taatgatgta gctcgatctg gaaaagaaaa atgccggaaa aaagagttca ttcatctgca      1500
     taattcagag tcaaagaaag gaataatgtc gctgccggcg agcccaggta aaccatgctg      1560
     gatttgcaaa cgtaccgacc ataagattcg gtactgcgac gatttcaagc gtatgaatgt      1620
     ggctgagcgt atcaaggcag tagaaaaact aaagctatgc aatctctgct tgaactcgca      1680
     tggaaatagt cggtgtactt tcaaactgcg ttgttccgtg aaggactgtg gaggaaatca      1740
     tcattatctg cttcatcgaa gggaagaatc ggttcagctg atggaagttg gctgtaatgc      1800
     acacaagaac ctgtcacgtg gagtgatatt tcgcatggtg ccggtaacat tgttcgccgg      1860
     aaacttgagc ttgcaaacac tagctttcct agacgagggc tcttctagca cactagtgga      1920
     cgaagttgta gctaaacgat tgaagctgac cggtgaactc gaaccattga tagtaacctg      1980
     gactggtgga ataaagcgac atgaaaattg ttcacgcaaa atcagattta tgctgtctgc      2040
     caacggttgc gaaaaacaat tcacactgga tgatgcccgt acagtgtccg aactaatgct      2100
     gccgaagcaa tgcgtgcgat tttccgaaat aacagctcgt tatccacatc tctctgacct      2160
     gccagtggcc gaccattcat tggaagatcc gaaaatattg ctagggctaa acaatttgca      2220
     cctattcgcg ccactagaat cacgtgttgg caatcctggt gaacccatcg ctgtacgctc      2280
     agctttagga tggacagtat atggaccgga gatacatcga tcgaccactg aaacgtttgt      2340
     caacctacat tcaatcaaac cagcaagtaa tcaagaactt cacgatttga tgcgagccca      2400
     atttgttttg gatgaagttg gtgtcacttc gtttggagta ccagaatctg ctgaggatca      2460
     acgggcacga acaatactgc aggagacaac agtgcgaatc ggggatcgct tccaaactgg      2520
     gctgctttgg cgagaagatg tacgacaatt tcccgatagt ttcccaatgg cctttcgtag      2580
     gctaaaagcg ctggagcgta aactagagaa aaattcgttg ctgaaggaaa atgtgcttat      2640
     gcagatcgaa gaatatcaag ccaaaggcta cgcacatcag gcaacaacag aggaaatagc      2700
     agaaataccg tcttctaatg tttggtactt gccgttaaat gtggtgttga accctcggaa      2760
     gcctgacaaa attcgtttag tgtgggatgc agccgcatcc gttgatggcg tgtcgctaaa      2820
     ttcagaattg ctaaaaggac cagacatgtt ggtttcactt cctgaggtga ttagtcactt      2880
     tcgagaaagg cccgtcgcct ttggcggaga tattgccgaa atgtatcatc agatacggat      2940
     cagaccagag gataaatcgg cacaacgttt tctgttccgc acaaatcctg ataaagatcc      3000
     gcagatattt gtcatggatg tcctaacttt cgggtcaacg tgctctccta gttcagcaca      3060
     atttgtcaaa aatttaaatg ctgaacagta cacgaccgag ttccctgaag cgacaaatgc      3120
     gattataagg cgccattatg tagacgacta ttttgatagt acaaacactg ttgatgaagc      3180
     gatcaaacga gcaaaggaag tacaatacat tcacgccaaa ggcgggtttt gtatccgaaa      3240
     ttgggtctcc aattccagag cttttttgga agatatgggc gagagagaag catgccggaa      3300
     agtgcacttc agccacgata aagacaacga atatgaacga gttttgggca tcgtttggga      3360
     accactacac gatgtatttt cctttgctgc ttcatctgtt gcaggcatcc agcaaagaga      3420
     tggagaaagt gatcatccta caaaaagaat ggttctaagt cgtgtaatgg ctctttttga      3480
     tcctttgggt ctgttatctc cattcactgt gcgcggaaga atgttagttc aagatctttg      3540
     gcggacggga tgtggatggg acgaatgtat cgacgatgag tcctttcaaa aatggcaacg      3600
     ttggtcaaag cggctacacg atattgagac gttcaaaatt ccaagaagct acttcggaaa      3660
     aaacaggtca gacgaaattg agaatctcca gctccatatt ttcacagatg ccagtgaaac      3720
     tgcgtacgga tgtgtggcgt actttcgggc ggtcatccga ggtcaaatcg agtgtgtatt      3780
     ggttatgagt cgttccaaag ttgcaccatt aaagcagtta tcgatcccac ggttagagct      3840
     tcaaggtgct gtactgggag cacgtttagc acgaacagtg cacgagaatc acagctatac      3900
     catcggcaaa cagtttatgt ggacagattc gcaaacagtc ctttcgtgga ttcgatccga      3960
     tcaaagaaga tataggcagt ttgttggatt tcggattggt gaaattttga gcctgaccaa      4020
     actcagcgaa tggaattgga taccctcgaa aatgaatgcg gccgaccagt tgactaaatg      4080
     gggaaacgat gtagaattac tttcggatag ctcatggatc agaggtccac cgttcttgta      4140
     ccaaaaggag gaagagtggc ctaaaaagaa cttgccaccc gcgaatacta tgcaggaact      4200
     gcgtgccaat ttacttctgc ntaacatcaa cgtaccagac gtcttgatcg atgttcgtcg      4260
     gttctccaaa tggacagtac tggtacgaac cgtagcggta ttgttccgtt ttattacaaa      4320
     tctgaaaagg aaagctcaac aacttcccat tgaaacgttg aaggctacaa ctacgcaagc      4380
     tcgactaatt ggacatgcaa tccgctcagt tcgccttcct ttgcagcaaa ctgagtattt      4440
     gaaagcagag caatatttgc tgaaaatagc tcaagctgaa gcatacatcg acgagttgaa      4500
     agtcttgatt cgaaataaag agcgaccagt ggatgagtgg atgacaatcg aaaaatcaag      4560
     tccgatttat aagttgactc ctttagttga tgaaaacggt ttgttacgta tggaagggcg      4620
     atcagagcga gcagaatttc ttcctttcga tttgcgattc cctataatta tcccggctga      4680
     ccatcctatc acgaaattaa tngtgcaagg ctaccacgaa aggttcggtc atagttaccg      4740
     cgaaacagtt aaaaacgaac ttcaacagcg cttttttatt ccgaaagtca actctgtgat      4800
     acggaaagta atgaaggact gtgtctggtg taaagttcat cgtaatcgcc ctcaacctcc      4860
     tagaatggca ccgttaccag ttcaacgtct gacgccaaac ctgcgaccat ttagttatgt      4920
     cggcgtagac tatatcggac cattcgaggt atcagttgga cgacgagtag aaaaacggtg      4980
     gatagtttcg ttcacctgtt tggtggtaag agcggtgcac gtcgaagttg cgtacagcct      5040
     aaccacacag gcctgcttga tggcaatacg aagatttgtc tgccgacggg gttcgccatg      5100
     tgaatatttc tctgataacg gtacaaattt gaaaggcgcg agtaaggaaa ttttatcaac      5160
     tgtatctaac atcggatttg attgtgctga ggaattcacg acagccagaa ctaaatggac      5220
     tttcaacccc ccagcagcac cacacatggg ggggggggtt tgggaaagat tagtaaggtc      5280
     tatcaaagaa gctctcgaag tgttgaatga tggacgacga ctaacggacg aaattctgca      5340
     aacatcgatt atagaagctg aagatatggt aaattcacgt cctctcacat atgtttccca      5400
     acagtccgta gagatgggag cgctcacacc caatcatttt ttgcgaggtg tttctcctaa      5460
     tgaacccaat gcaactccac caacaacgaa cctgtctgca actctccgcg attctttcaa      5520
     aagatcgcaa tatcttgcgg atgaaatgtg gaagcgttgg atccatgagt acattccaac      5580
     ggttaaccag aggaccaaat ggtttgaaga gaaacgtcag ttgaaagcag gagatctagt      5640
     atacgttgtg gaaggtttga accggaaatc atgggtacga ggaatcgtgg aggcgccaat      5700
     cgtttccagt gatggcagag tgcgccaagc gtgggtacgc acaaagggtg gcttgttcaa      5760
     acgcgcgaca gtgaagctgg ctgtgctgga aataggttgt agtaacactg gaccagatgt      5820
     gaacgaagga ccagagttac gggccgggga ac                                    5852
//
ID   BEL-252_AA-LTR repbase;    DNA;    INV; 488 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-252_AA_;
KW   BEL-252_AA-I; BEL-252_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-488
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2513-2513 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 488 BP; 183 A; 72 C; 106 G; 126 T; 1 other;
     tgttcggacc agcacctctg gcaccactgc cggccgacga aggaaatttg aaggaggaac        60
     aaatgtgatg gaagggaaag gcaaaacgtc aaacaagatt acgggcaaaa aattaaaagt       120
     cgcgtgatta agatagattg aatttatttg cagttaacta ttttatttga aatttgagaa       180
     gtttaagcta gaagtgggcg atataataac tactgatcag agctagaaca cacacgttga       240
     attgattaaa gctactgaca ctncattaaa attacacgta aacggaggag ttaagagctg       300
     taaatcgtga aataaaagga gaaagtgaaa gtcattcgca ggagggaaac gaagaaacta       360
     actgtaagtt gcaaataatt gaaataataa tttgtaaaac taattcctaa aataaaattg       420
     cagctttgat ctgctttgaa gtggcagatt tcacggattt tttcttcaac ttcgacggtt       480
     tccgaaca                                                                488
//
ID   BEL-253_AA-I repbase;    DNA;    INV; 6292 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-253_AA_;
KW   BEL-253_AA-LTR; BEL-253_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6292
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2514-2514 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5198-5779] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           875..5335
FT                 /product="BEL-253_AA-I_1p"
FT                 /translation="MGKKLKAKIHVRDNIVDFLTRTAKFLASSQAADEHRI
FT                 RFRLEKLEAKWDEFEEAQADIEETEDHEESIETHREVRENFEEMYFEVRAG
FT                 LVGKLPQNTQTHSTQGLSSSVPHLESSNVHNYVRLPQINLPEFDGSFEKWL
FT                 PFHDTFKALIDSSPDLGGIQKFHYLRASLRGDALKLIDSYPMSEANYEVAW
FT                 NGLVARFSNGYLLKKRHLNAMFEFPKIRKESASSIHDVIDCFERNTKILDQ
FT                 LGERTSSWGAKLTHLMVSKLDDVTQKRWEEHVSDQVEPSFALLVEFLKKQT
FT                 RVLDAVLVDQKVSSTQGQSSSFGVKPRPPKISVNSATEWKVQNCVSCGEQH
FT                 SIVQCPSFHELPVDRRLQLSNSKRLCSNCLGRNHLARDCPSKFRCKTCAKK
FT                 RHTLLHPGFPGSGSTSTANSEVSTAQVTHVSTAAASEDASNSGGTVTSSVA
FT                 SISTNMAVKHLGNHVFLLTVLLKIKDSWGRTHLARGLLDSGSQANLMSERL
FT                 CQLLKLPRRAKRVEISGIGQTRRNAAYEVSTSISSRIRDFSLSMDFLVLGQ
FT                 VTSDQPSSSLPLAKWAPPAGMQLADPEFYVSGPIDLVLGCQFYYDFHLLDG
FT                 GRVQVCKIDSSLPVFVNTVFGWVAAGESERSGTSAMVSCHLATAETLDKAM
FT                 EKFWSIEEISDKPLRSQEEEDCEQHFRATIDRDATGRYVARYPKKIGFHEK
FT                 IGDSLSTALRRFNQLERRLGRDSNLRQQYCDFLQEYLDLDHMRPIGTVEDA
FT                 QNEQRTVCYLPHHPVFKESSSTTKVRVVFDGSAKTTTGCSLNDALLTGPVI
FT                 QDDLIDLMIRFRKHNIALVADVAKMYRQVRIHSDDTPLQRILWRFNQDEPI
FT                 QIFELQTVTYGLSPSSFVATRVLKQLAFDGGSKYEHAAAVVTDDFYMDDFL
FT                 SGAESVEKAKSLRNDVQSLMAEGGFELRKWSSNSPEALHDLPPDSLEGQTT
FT                 VHFDAEQKVKTLGVAWETRSDCLLIDVPSTREEKQWTKRRVFSAIAQLYDP
FT                 LGLVSPVVAWAKIQMQHLWLLSLDWDDLVPDEISDKWLEFYRQLPLLQHFK
FT                 VPRCILSKNYTIMQFHTFSDASEVGYGACIYARSISEGGINVQLIASKSRV
FT                 APIKRLSLPRLELCAALLGAKLYAKVTGALKMEGTPCWFWSDSMVTLHWIQ
FT                 APPNTWQTFVGNRTSEIQLLTHGQKWAHVKGTDNPADHVSRGLLPKDFIHN
FT                 TLWKHGPPWLGEEEEAWPKQSHLLPPAEDILERRKTVLVAQSSPEENPLFE
FT                 RYSSYWRLVRITAYLRRFINRCRSKTHQCEAFLTRSELREAKEALVKLVQQ
FT                 EKFAEELKQLKQKGPLPKKFPLKNGRPIIDEKGILRLGGRLNYSNENYQTK
FT                 HPIVLPSKHPLSRLIAAHFHALCLHAGPRMTLATMRREFWPISGKTLVNHV
FT                 CRKCVKCFRQNPVPVTQPQGQLPQARTVPSRPFSTTGVDFCGPLYLKPVHR
FT                 RAAPQKVFISVFVCFATKAVHL"
XX
SQ   Sequence 6292 BP; 1643 A; 1597 C; 1552 G; 1492 T; 8 other;
     ttggtgccgt gatcaggatc agtgttccaa ggaaccgacg ctgcgtcggt aaggccatct        60
     tttagtctac ggacaaagga cttacgccat tacatcattt ggcggtttca agtcggcttg       120
     gtgacgccat tgggacttct tggagtaacc ggtagagaat cagcattgta caaggcctat       180
     tgaacaggct cacaaggtga gtacctgtcc aacaaatctc aataagcttt catctctacc       240
     tggtcatttt tctgtccctc tcggtactac gttggtgtgg acttggtggt tgagaacggc       300
     tggacggaac cagtaaattt ggatcggagt ataaccgcta acggcttggc ggtattctgg       360
     agttatctgg gccgatttga tggtgcaacg cggacttcaa ccgtaaattt ggatcaatcg       420
     gcacaggaag acattctcgg gttgatacga atctcattcg ttactcgtaa accggcgttt       480
     caacggaaat tggtgtacaa tttaaacaat acaaggccta tagagacagg ctcacaaggt       540
     gagttcctgt ccaactactt tattggtgtc gaaaggtgct tcgcttgtga aatatttgca       600
     gaaccagttc tggccaacga cttcccaacg gcattctggt gctccgtcag cgtgtcacgc       660
     agctcgtttt ggtgatcggc atttcggact ggaggaagga gtgtttgcag gttccagaga       720
     gaaattgtac aaggcctatt tgacaggctc accaggtgag ttcctgtcca aatccgttta       780
     tttctcttgg aaaggttccc cgctttgccc tgtacattcg caggccaact cctggtaatt       840
     cgacgctccg ccatcgccat caacgctacg caccatggga aagaagctga aggccaaaat       900
     ccacgtcagg gacaacattg tggacttcct gacacgtacg gcaaagttct tggccagcag       960
     ccaagcagcg gacgagcacc gaatacggtt tcgtttggag aaattggagg ccaaatggga      1020
     cgaatttgag gaggcacaag ccgacatcga agaaacagaa gaccacgagg agagcatcga      1080
     gacgcatcga gaggtcaggg aaaatttcga agaaatgtat ttcgaggtaa gggcagggtt      1140
     agtcggcaaa ttaccacaaa atacgcaaac gcattcgaca caagggcttt cttcatccgt      1200
     gcctcatttg gagtcgtcta acgttcataa ttacgtacga cttcctcaaa tcaatcttcc      1260
     cgagttcgat ggaagttttg aaaaatggtt gcctttccac gacacattca aggccctgat      1320
     tgattcttct ccagatttag gtggtatcca aaaattccac tatctacggg cgtctttaag      1380
     aggtgatgcg ttgaaattga tcgattccta tccaatgagc gaggctaatt atgaggttgc      1440
     ttggaatggg ttggtcgctc ggttctccaa cggttacctg ctgaagaaac gccatctgaa      1500
     tgcgatgttc gagttcccga aaatccggaa ggagtcagct tcgagtatcc atgacgtcat      1560
     cgactgcttc gagcgcaaca cgaaaattct cgaccagtta ggggagcgta cgagcagttg      1620
     gggtgcaaag ctaacgcatc tgatggtgtc taagctggat gacgtcacgc agaaacggtg      1680
     ggaggaacat gtatcggacc aagtcgaacc atctttcgcc ttgctggtgg agttcctgaa      1740
     aaagcaaacg agggtacttg atgcagtctt ggtcgatcaa aaggtttctt ctacgcaagg      1800
     gcaatcgtca tcgtttggag tcaaaccacg tccccccaag atttcggtca actcggcgac      1860
     cgaatggaag gttcaaaatt gcgtttcgtg tggtgaacaa cattcgatcg tccaatgtcc      1920
     gtctttccat gagcttccgg tggacaggcg tctgcaatta tccaattcga aacggctttg      1980
     cagcaactgc ctgggtcgga atcatttggc acgtgactgt ccctccaaat ttcggtgcaa      2040
     aacctgtgcc aaaaagcgtc acacgttgct acatcctgga tttcccggtt ccggttccac      2100
     gtccacggcc aactcggaag tttcaacggc acaagttact cacgtctcaa ctgcagcagc      2160
     ttcggaagac gcttcgaact ctggtggtac ggttactagt tcggtagcat caatttcgac      2220
     caacatggcg gtgaagcacc ttggaaatca cgtcttcttg ctcactgtgc tgctgaagat      2280
     caaggacagc tggggaagga cgcatttggc acgaggtcta ttggattccg gatcacaagc      2340
     aaacttgatg tcggaaaggc tctgtcagtt actcaaactg cctcggcgtg cgaaacgggt      2400
     ggagatcagt ggcattggtc agacacgaag gaacgcagcg tacgaagtat ccacttctat      2460
     ttcctcacgt attcgggact tttccttgtc gatggatttt ctggttctgg gacaggtcac      2520
     atcggatcag ccgtcttctt cacttccatt ggcgaaatgg gcaccgccag ccggcatgca      2580
     acttgcggat cccgaattct acgtgtcagg cccgatagat ttggtactgg ggtgtcaatt      2640
     ctactacgat tttcatctgc tcgatggtgg ccgggttcaa gtttgtaaaa tcgacagttc      2700
     gcttccggtt ttcgtcaata ccgttttcgg ttgggtagct gcaggtgaat ccgaacgatc      2760
     tggcacaagc gcgatggttt cctgccatct tgcgactgcg gaaacactcg acaaggcaat      2820
     ggagaaattt tggagcatcg aagagatatc ggacaagcct ctgcgttccc aggaagaaga      2880
     agattgcgaa caacatttcc gggcgacgat cgatcgagac gctactggtc gttacgttgc      2940
     gcgatacccg aagaagattg gttttcacga aaaaattggc gattcgctca gcacagcatt      3000
     gcgccgattt aatcaactgg agaggcgatt gggtagagac tcaaatctac gccaacagta      3060
     ctgcgacttt cttcaagaat acctggattt ggaccatatg cgcccgatag gaactgtgga      3120
     agatgcgcag aatgaacagc gaacggtttg ctacctcccc caccaccctg ttttcaagga      3180
     gtctagttcg acaacaaaag tccgggtggt tttcgacggc tcagcgaaga caacaactgg      3240
     ttgctctctc aacgacgctc ttctcactgg tccggtgata caagacgact tgatagactt      3300
     gatgatccgt tttcgcaaac acaacatagc cttggtagca gatgtggcca aaatgtaccg      3360
     gcaggtgcga attcattcgg acgacacacc cctgcaacgc attttgtggc ggttcaatca      3420
     agacgagccg attcaaattt tcgagctgca aacggttacg tatggcctat caccatcgtc      3480
     gtttgtcgct acacgcgtgc tcaaacaact cgcgttcgac ggtggtagca aatacgaaca      3540
     cgctgccgca gtagtgacgg acgacttcta catggatgat tttctctcgg gagcggagtc      3600
     ggtcgaaaaa gctaaatcgc tgagaaacga tgtgcaatct ctcatggccg aaggcggatt      3660
     tgagttgaga aagtggagct cgaattcacc agaagcattg cacgatctac cccctgattc      3720
     tctcgaggga caaacgacgg tacatttcga cgcagagcag aaggtgaaaa cgctaggagt      3780
     agcatgggag acgaggtcgg attgcctgct catcgacgta ccttcgacaa gagaagagaa      3840
     gcagtggacg aagaggagag ttttctcagc aatcgctcag ctgtacgatc cacttgggtt      3900
     ggtttctccg gttgtcgcgt gggccaaaat acagatgcag cacctctggt tgttgtcact      3960
     cgattgggat gatctcgtcc ccgatgagat tagcgataaa tggttggagt tttacaggca      4020
     gcttcctctc ttgcaacact tcaaggttcc ccgttgcatt ctctccaaaa actacaccat      4080
     tatgcagttc cacacgttca gcgatgcatc ggaggtcgga tatggagcgt gtatttacgc      4140
     acgatcgatc agcgaaggtg gaatcaacgt gcagcttatt gcgtccaaat ctcgggttgc      4200
     gccaatcaag cggctcagtc tgccacgtct cgagctgtgt gctgctttgt tgggtgcgaa      4260
     attgtacgcc aaggtcacag gagcactcaa aatggaaggc acaccctgtt ggttctggtc      4320
     agattccatg gtcacgctgc attggataca ggcacctcca aacacgtggc aaaccttcgt      4380
     ggggaaccgt acatccgaaa ttcaactcct aacgcacggg caaaagtggg cacacgtgaa      4440
     gggaactgac aacccggctg atcacgtgtc acgcggattg ctaccgaaag atttcattca      4500
     caacacgctc tggaaacacg gaccaccctg gttaggagaa gaagaagaag catggccgaa      4560
     acaatcacac ctacttcccc cagctgaaga tatcctcgaa cgacgaaaaa ctgtactggt      4620
     agcgcaatca tccccagaag aaaatccact tttcgaacgg tattcctcct attggcgttt      4680
     ggtgagaatc actgcttacc tccgtcgatt catcaatcgc tgtcgttcga aaactcatca      4740
     atgcgaagcc ttcctcacca ggtcggagct gcgagaagcg aaagaagccc tggtcaaatt      4800
     agttcaacag gagaaatttg ccgaagaact gaaacaactg aagcaaaaag gtcctttgcc      4860
     gaagaagttt cctctcaaga atggtcgccc tatcatcgat gagaaaggta tcctgcgtct      4920
     tggtggccgg ctcaactact ccaatgagaa ctaccaaaca aaacacccaa tagtccttcc      4980
     tagcaagcac ccactatctc gcctcatagc cgctcatttt cacgccctct gtttgcatgc      5040
     tggccctcgc atgactctgg caacgatgcg tcgtgaattc tggccgatca gtggtaaaac      5100
     tttggtcaat catgtgtgtc gaaaatgcgt aaaatgtttc cgccaaaacc ctgtccctgt      5160
     aacccaacct caaggccaac tccctcaagc acgaaccgta cctagccgtc ccttttcgac      5220
     caccggcgta gacttttgcg ggccnctnta tctaaaaccg gtacaccgcc gagcagcccc      5280
     gcagaaagtt ttcatctccg tcttcgtgtg tttcgccacg aaggcagttc acctaganct      5340
     ggtgtgcgat ttgtcgacgg atgctttcat cgccgccctt cgtcgtttca tcgctcgacg      5400
     tggaattcca gcngagatcc agtccgacaa cggaactaac ttccagggcg cgaagaagaa      5460
     actcnccgan ttgcaccaca tcttcaacac caaaccgaac cagcgagcaa tcatcaatga      5520
     atgcagtagc aagggaattt cctggcgatt catcccacca cgagcaccca actttggcgg      5580
     cctttgggag gcggccgtga aaacagcgaa atcctcgttg gcaaagacga ttggttgcca      5640
     tcagctgtcc tacgaagaca tggtcactgt gctgtaccag atcgaggcga atatgaacag      5700
     tcgtccccta acaccgcttt ccgacgatcc ttccgagctc gacgtcctca cncctggcca      5760
     tttcctcatc ggtgagccgc tgcttagcct accagatcct gactacacga cagtaccaat      5820
     taaccgactg caacactatc aacagctaca acaggtcatc caaaaccact ggcagcgatg      5880
     gagaagagag tacctcaccg aantcaatca gcagtggcag aaatccaaac aacccacgga      5940
     tattcgaacc ggtcagatgg tacttgtgaa ggaagacggc aaaccatcgg tcgcttggcc      6000
     actcgcacgg atcgtagcag ttcaacctgg caatgacggc atcgttcgcg tggcaactat      6060
     ccaaacgaaa tcgggcacat acacacgagc catcaacaaa cttttccctc ttccaatcga      6120
     ccgtgatctt cagcagcaat atgacgtcca tcagcagtaa tcgaatcagc aacagctaaa      6180
     aattagaaca gttagtaaaa tattccaaat acttatctag tgcaggcata aaaagcataa      6240
     ttattagctg aaattgggta aatttgttcc gcaaattgta ggtggccggc aa              6292
//
ID   BEL-253_AA-LTR repbase;    DNA;    INV; 558 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-253_AA_;
KW   BEL-253_AA-I; BEL-253_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-558
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2515-2515 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 558 BP; 154 A; 116 C; 128 G; 157 T; 3 other;
     tgttggtgct aacgtttgct caccatgctt gtcaactttc ttcatctgtc agctattcgg        60
     gtataacact ttgtgtcgat gctaccaatg tactcgaatc gcgagtgagc tagtgagaag       120
     gttgtaggct acacgagaat gggttaccat attcagatgt tgcgcgtgga gtcnctaaaa       180
     tcgtgcaaca ctctntttgc gaggctagct ataggagatc gcntagatca cttctagtcc       240
     aaccgccgaa tcgttcggat cggccgcgaa atcgtccaat tttaatctgt agtgttgtag       300
     aataaatgta tagtctgtag tttgaataaa tcgttaattg tagtgtgtaa taaatgttga       360
     gttagtgtaa taaagtgttt taaagtacaa accgcgtaat tacctgtgtt ggagtgccga       420
     gaatatactc gcctgattcg gggacaccta caaaccaacc ctgggaacta cagactccgg       480
     aaaccctcaa tcctacctgg aacaaaatct agacgatcaa cggactctct ggtggaacac       540
     ttggtaaggg ccacaaca                                                     558
//
ID   BEL-254_AA-I repbase;    DNA;    INV; 5530 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-254_AA_;
KW   BEL-254_AA-LTR; BEL-254_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5530
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2516-2516 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4538-5122] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..3757
FT                 /product="BEL-254_AA-I_1p"
FT                 /translation="MEKLFRERKSLEPRLTRISGVVTKLRPEEAEEIDVQS
FT                 EIDALSEVWSSYGVVHRRIIDACSDDETYDKAVKHQEIFEGNYISVKNRLL
FT                 KIMKAVKNRDISASTQQSTSQDIIQQLAAQQAELLRVMSTNMAAASASTSS
FT                 AIANREANQIPLSDLKLPQMNLPVFNGDYLEWQSFSDLFDSMVHQNTSLKD
FT                 SQKLYFLKTNLDGEAASLISHLKIEDANYQAAMDKLKSRYNKPREIANKHI
FT                 QRFLTQHALTSSSAQGLRTLRDVSDEVIRALKAMGREDRDTWLLFILSEKV
FT                 DPETKQLWCQKIAEMRDADITLQSFLNFIESRSFALQSVQAIKPKPSTPFR
FT                 PPPKFPPRGATSYVATHIPSCELCAKPHLLYQCGRFLHMNPNDRIAHVNRL
FT                 KLCGNCLKSHPGESCRAGMCRKCNSPHHTLLHFSTSSASNEAHANGGKPLR
FT                 SLISAIEEPSALDVSNVLLATVAIDVLDHYGRPHACRAVLDSASQVNFISD
FT                 SLCRKLGTKTNVASMVLEGISSTPAHADKCAEIVISSRCTNYRATVPCLVL
FT                 EKITKTLPCKPAHIDKWPIPGSINLADPLFHLPGQVDVLLGTELFFQLLEP
FT                 GKVTLSTDDSLPTLQNTKLGWIVAGRYHDSSPMIRTHPSTCLLTTYEDDLS
FT                 LQLRKFWELEEYSANTNHLSDEEKLCEQHFTDHTFRNDSGRFVVRLPFLVD
FT                 PSQLGESRKMAERRLHHIERKLDRNPPLKTEYHAFMREYLELGHMSLIEET
FT                 SAAYKSVYLPHHCVIKATSSTTKCRVVFDASAKTTSGLSLNDALMCGPVVQ
FT                 DSLINILIRFRFPAVVLVGDAKQMYRMIWLDEVDRDFQRILWRWNEDEPVR
FT                 EYRLNTVTFGTKSASYLATKCVHELLESNRERYPMAVERAIKGIYVDDVLI
FT                 GASSEEEAKTLREQLTEIFAAGGFHLRKWASNSAGVLDGVPDSDLELKISI
FT                 EEGGSSTVKTLGMQWQPCSDVFLFSYHQNEILRPTKRSILSQIASLFDPLG
FT                 LLAPVIVKAKLVMQRMWELKVAWDSTPPGELSKDWFDLVQSFPLLNTFQIP
FT                 RRIIDMRNWSRLYLHGYCDASEVAMGACLYVRAIDDEGNTSSHLLCAKSKL
FT                 APIGNGRVTTPRLELCAAVILARLMANVQAALSTTTFYEIRAYSDSKVVLA
FT                 WLSGGAARWKTFVANRVAEITTHIPAIN"
FT   CDS           4235..5530
FT                 /product="BEL-254_AA-I_2p"
FT                 /translation="MDENGLVRVGGRLEQSDLSYDNRHQILLPRHSILTSL
FT                 ILLDQHQEQLHCGPQLLLAFSRRRFWILRGCSAARKVCRDCVLCNRSRPVR
FT                 LMQQMGQLPADRVKPSPPFSVTGVDYAGPVSVVGRRSRGAVPSKGYIALFV
FT                 CFGTKAVHLEAVSDLSASSFLAAFSRFVSRYGLPSKMYSDNATNLRSAAKT
FT                 LRQLYRQIDVAEHSSDVCDYLADKRVQWSFIPARSPHHGGLWEAGIKVVKG
FT                 FLNKIGNNYNYTFEELSTLLAQISACMNSRPICAISDDPKDPQPLTPAHFL
FT                 IGRPLNALPEINRLEHHIGSLARWKYVQRMVQEFRVRWQEEYVTSLQRLSR
FT                 WQSASCNIEEGDFVMLVGADDRPQQWPIGRVLKLFPGPDGLVRVVSVKTAS
FT                 GIFRRDIRKIRRFPLDSDEYVPGRNGTEIPASNLVGGV"
XX
SQ   Sequence 5530 BP; 1510 A; 1339 C; 1295 G; 1379 T; 7 other;
     tatggtcctt cggtagccgg atagcgagaa attcgccgcg aatcgcgtcc taagtgatca        60
     tcagtgtccg tacggtggcc tcgtcgcagt agtgtcaact ccagtgcttc tgccaaccca       120
     gacaatagtg atcaaaagga cagtgtgaac caaaaaatag tgactgactc tatcaaagtt       180
     cgtgaaatcc gcaaacatgg aaaagctttt tcgtgagcgc aagtcgcttg aaccgcggct       240
     gacgcgaatt tctggagtag tgacaaagtt aaggcctgaa gaagccgaag aaattgatgt       300
     gcaaagtgag attgatgcac taagcgaagt gtggtctagc tacggtgtcg tgcaccgcag       360
     aataatagat gcatgttctg atgacgaaac gtatgataaa gctgtgaaac atcaggagat       420
     ctttgaggga aattacattt cggtgaagaa tcggttactt aagatcatga aagcagtcaa       480
     gaaccgggac atttcggctt ctacacagca atcaacctct caggatatca tccaacaact       540
     cgccgcccaa caagcagaac ttcttcgtgt gatgtccacc aacatggctg ctgctagtgc       600
     ttctacctcg tccgccattg caaatcgcga agctaaccaa attccactct cggacctcaa       660
     gctccctcag atgaatctgc cggtcttcaa cggcgactat cttgagtggc aatcgtttag       720
     cgatttgttt gatagtatgg tgcatcagaa tacatcgttg aaagacagtc agaaattgta       780
     ctttctaaaa acaaatttgg atggcgaggc cgcgtcgttg atctcgcatc ttaagataga       840
     agacgcgaat tatcaagcgg caatggataa actaaaatct cggtacaata agccacgaga       900
     aattgctaat aaacatattc agcggtttct gacgcaacac gccttgacgt catcttcggc       960
     tcaaggattg cgtaccttgc gtgacgtttc ggatgaagtc attcgggctc tcaaagccat      1020
     gggaagagag gatcgagata catggctgtt gttcatcctc agtgagaaag ttgatcccga      1080
     aacaaaacag ctgtggtgcc agaaaattgc agaaatgcga gatgctgata tcactctgca      1140
     aagttttcta aacttcatag aatctcgaag tttcgcactg caatcggtgc aagctattaa      1200
     accgaaacct agcaccccgt ttaggccacc accaaagttt ccaccacgag gtgcaacatc      1260
     atatgttgcc acccatattc cttcatgcga actatgtgcg aaaccacatt tgttgtacca      1320
     atgcggaagg tttctgcaca tgaatcccaa cgatcgaatt gctcatgtca accgattaaa      1380
     actctgtgga aattgtctaa aatcccatcc tggtgaaagc tgtagagcag gtatgtgccg      1440
     caaatgcaac tcacctcatc acacattgct tcacttttcc acatcatcag catccaacga      1500
     ggcccacgca aatggaggaa aaccgctgcg ttccttgatt tcggccatag aagaaccttc      1560
     agctctcgat gtttccaatg tccttcttgc gactgtcgcc atcgatgtct tggaccacta      1620
     cgggcggcct catgcttgcc gtgccgtctt agatagtgca tctcaagtca actttatcag      1680
     tgacagtttg tgccgcaaac ttggcaccaa aacgaatgta gcaagcatgg tacttgaagg      1740
     catttcatca acgcctgctc acgccgataa atgtgcggaa atcgtaattt catcacgatg      1800
     cacaaactac cgggcaaccg tgccctgttt agtccttgaa aaaatcacaa aaacactgcc      1860
     ctgtaaacca gctcacatcg acaaatggcc gatcccgggt tcaataaact tagccgatcc      1920
     actatttcat ctccccggtc aggtcgatgt tctactgggt acggaattat ttttccaact      1980
     gctggagcct ggtaaagtca ctctcagcac cgacgatagc ttaccaacac ttcagaacac      2040
     caagctaggc tggatagtcg ccggccgcta tcacgactca agcccgatga tcagaactca      2100
     cccctcaaca tgcttattga ccacttacga ggacgatttg tctctccagc ttcgcaagtt      2160
     ttgggagctt gaagagtaca gcgcgaacac caatcatctt tccgacgaag aaaaactctg      2220
     tgagcaacat ttcaccgatc acacctttcg gaatgactct ggaaggtttg tcgtcaggct      2280
     cccctttctc gtggatccca gccaattggg agagtcacgg aaaatggcag agagaagact      2340
     ccatcacatt gagcgaaagc tcgatcgtaa tccacccctc aaaactgagt accatgcgtt      2400
     catgcgcgag taccttgagc tcggtcatat gtccctcata gaggaaacga gtgccgcata      2460
     caaatctgtt tatttaccgc atcattgcgt tattaaagca acaagctcga ccaccaaatg      2520
     tcgggttgta tttgatgcat cggcaaaaac gactagtggt ctctcgttaa atgacgcact      2580
     catgtgtggc cctgttgttc aggactcgct gataaacatt ttaataagat ttcgcttccc      2640
     agcagtcgtt ctggtgggag acgcaaaaca aatgtaccgc atgatttggt tggatgaagt      2700
     tgatcgggat tttcagagaa tactgtggag atggaatgaa gatgagccgg ttagagaata      2760
     tcggctgaat acagtaactt ttggaactaa gagcgcatcg tatttggcca ctaaatgcgt      2820
     tcatgaatta ctagagtcca atagagaaag gtatccaatg gcagttgaaa gggctatcaa      2880
     aggcatctac gttgatgatg ttcttattgg agcatcgtcc gaggaggaag ctaaaacgtt      2940
     aagggaacag cttacggaga tttttgctgc tggtgggttt cacctgagaa aatgggcctc      3000
     aaacagtgca ggtgtgttgg acggcgttcc agactcagac ttggagctaa aaatatcaat      3060
     tgaagaagga ggaagcagta ccgtcaagac cctcggaatg cagtggcagc cgtgcagtga      3120
     cgtcttcctc ttctcttatc atcaaaacga gatccttcgg cccacaaagc gcagcatatt      3180
     atcacaaatt gccagcctat tcgaccctct tggccttctt gcaccagtca ttgttaaggc      3240
     caagcttgtg atgcagcgaa tgtgggagct gaaggtggcc tgggactcga ctccccccgg      3300
     tgagttatcg aaagattggt ttgatttggt ccagagtttc ccacttctca atacatttca      3360
     gatccctcgg cgtattatcg atatgcgcaa ttggtcacga ctatacctgc acggctactg      3420
     cgatgcatcc gaggtggcaa tgggggcctg tctctacgtt cgcgccattg acgatgaagg      3480
     aaacacgtct tctcatctcc tttgtgccaa atcgaaatta gcaccaattg ggaacggcag      3540
     agtaacgaca ccacgactgg agttatgtgc tgccgtaatc ctagcgcgcc taatggcaaa      3600
     tgttcaagca gcattgtcaa cgactacttt ttacgagatt cgagcatatt ccgactctaa      3660
     agttgtattg gcatggttgt cgggaggcgc agcgaggtgg aaaaccttcg tggcaaaccg      3720
     ggtggctgaa atcaccactc acattcctgc tatcaactng catcacatag gaactgaaga      3780
     gaatcccgcg gacttgatct cacgaggcac ctttcctgag cagctacaac aaaactctct      3840
     ctggtggttc ggtccagatt ggaatccaan agaaatggaa atgataaccg caccttgcgn      3900
     cgatctggat ggcagtgcat ggcgtcaaat tgaaagagag cagcgcaacg tggtatcagt      3960
     gtttcttact gtatatgaaa atcagttttt ggataacatg atggttcgtt actacccgaa      4020
     cttcaagctt cttctacgtg ntaccgctcg catgcttcgt attggccacc gtgagttccg      4080
     ggatagcgag cggctctcgc cnagtgaaat cgagtttgct ctcaacaaat acctacaaca      4140
     tacacaanga caacattttg cgaacgagat cgaccgactg cagaaaaatc aagaagtcaa      4200
     ccgaggtagc tcattacatc agcttcgtcc cttcatggac gaaaacggac ttgttagggt      4260
     gggcggccgt ctcgagcaat ctgatcttag ctacgataat agacatcaaa tactattgcc      4320
     acgacactca attttgactt cactcattct gctggatcaa catcaagaac aacttcactg      4380
     tgggcctcag ttgctcttgg cattctctcg aaggaggttc tggattcttc gtggctgtag      4440
     tgccgcgcgc aaagtatgtc gcgattgtgt cttgtgcaac agatccagac cagtncgttt      4500
     aatgcaacaa atgggacaac tgcctgcaga tcgggtgaaa ccttcaccac ctttttcggt      4560
     aaccggagtc gactacgccg gccccgtcag cgttgtgggg cggagatctc gcggcgcggt      4620
     accgtccaaa ggatacatag cactttttgt gtgcttcgga acaaaggccg tgcacctcga      4680
     agcagtgtct gaccttagtg catcttcatt tcttgcggca ttttcccgat tcgtcagtag      4740
     atacggactt ccctctaaaa tgtattcgga caacgcaacc aatctacgtt ctgccgcaaa      4800
     aacacttcgt caattgtacc gccaaattga tgttgctgaa cacagctccg acgtgtgcga      4860
     ttacctggct gataagcgag tgcagtggtc attcattccc gcccgttctc ctcaccatgg      4920
     aggtttatgg gaagcgggaa taaaggtagt gaagggattc ctcaacaaga ttggtaacaa      4980
     ctacaactac acatttgagg aacttagtac tctacttgca caaatctccg cttgcatgaa      5040
     ttcacgcccg atatgtgcta tttcggacga cccaaaggat cctcaaccac tcacgcccgc      5100
     ccattttctg attgggcgtc cgctgaatgc tctaccggag attaatcgtc ttgaacatca      5160
     cataggatcg cttgcgaggt ggaagtacgt acaacgaatg gtgcaagagt tcagagtacg      5220
     atggcaagag gagtacgtaa catcgcttca acgtttaagc cgatggcaaa gtgcttcatg      5280
     taatatcgaa gaaggcgatt ttgtgatgct tgtcggagct gacgatagac ctcagcaatg      5340
     gcctataggc cgggtcttaa aactattccc aggccctgat ggactcgtaa gagtcgtttc      5400
     cgtgaaaact gcaagtggga tatttcgccg tgacataaga aagattcgac ggtttccatt      5460
     ggacagcgac gaatatgtac ctggacgaaa tggaacggaa attcctgcaa gtaatttggt      5520
     gggcggcgta                                                             5530
//
ID   BEL-254_AA-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-254_AA_;
KW   BEL-254_AA-I; BEL-254_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-283
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2517-2517 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 283 BP; 81 A; 71 C; 45 G; 86 T; 0 other;
     tgttgcgacc gaaatgacga accagcctaa caccagtcat cgaggttggt gctatcggtc        60
     atcagcaatc catccacagt acaaatatta cgtaactctt atataaattg aattcattgt       120
     tctcttgctc atcatcttct caaacacccc atgctaccgg ttgaaatatc agtattgttg       180
     aattcgtcta gtaagacacg tgtttttact gaaaatctac tccgaaaaac taccatctct       240
     ccgtcggtca gaatcacgat ttttttggac ccttgcgcta aca                         283
//
ID   BEL-255_AA-I repbase;    DNA;    INV; 6187 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-255_AA_;
KW   BEL-255_AA-LTR; BEL-255_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6187
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2518-2518 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5231-5791] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..5899
FT                 /product="BEL-255_AA-I_1p"
FT                 /translation="MSSRGRSNKGSNAGGGDSDANGGATNGAIGGITEGGA
FT                 TGGLRVVVTDETVEPEASFPGQSCRVCRREDNEQMVRCDKCLKWFHFICVG
FT                 VTQAIEDVPWSCAGCESSTQNANLQLNPAGVAASHGGTKKKSTVAEDNTAS
FT                 THLQPSGQVTPKTSNTIKPSQTKPKKTTKKLSKDKSPMLESVPPKDGHSQM
FT                 DSYKFPSKNIEPALEVGEQQYYSIKYPSKIVEPPVRKANSVSSHTSSHASS
FT                 RSSQSIAKLKLQKLEEERILNSKKLEQERLYLEEKYRLLEQMASESGSDVH
FT                 SQSDVVSGWLPRAESSQRSFVPEPVHLAANSVVNLRPRAGEEALRSAQREL
FT                 PQYQPAANRAFEDEHRSGVREVPQHASRLPEYDEDRCPLTKKQLAARQAVS
FT                 KDLPPFSGNPEDWPLFIATFNNTTAMCGFTNDENIFRLQKSLKGRAFEAVK
FT                 SRLVHPANVPGVLKTLKMMFGQPEAIVHTLIEKIHALPAIREDRLETLVDF
FT                 AVSIENFCATVDACGLDEYLYNSTLLHQLVSKLPPTIKLNWAQYRIALPGV
FT                 NLAAFSAWIYSLAEAASAVTIPNVVNSRPIRSESRTTKKGNAFVNAHSENA
FT                 SSESRSPNPSSGKRSNANGECLVCKGACKAVDKCKRFLEFSRDSRWSTVRE
FT                 FGLCRRCLSRHNGECQAKLCGKDGCQFKHHALLHKDQKQQSPASPTTQSSP
FT                 ASVPSTTDGTEPPKTGAGPSTHSCHAHQTKSSDVLFRYLPVVLHGKYRSVR
FT                 THAFLDDGSDLTLLDEELADELELDGEVRSLCLHRTGGARRREKKSRIVEL
FT                 EIAGVHKGAKSFTINGARTVNELMLPHQTMDTEELASLYPHLMGLPLESYH
FT                 SVRPRILIGLKNQHLSLALKCREGKPNDPVAVKTRLGWTVCGGRSTDVTSP
FT                 VHSVYHIGSCEDQCQADEDLHQVIKDYFALDSLGIMKPSEAPLSVEDQRAQ
FT                 FLLQSLTKFTGERYETGLLWRYDAVRLPDSRAMAQRRFQCLEKRMMKEEIL
FT                 AKTLKEKMTDYLKKGYIRRLSDEELRQPSQRVWYLPVFPVTNPNKPGNVRI
FT                 VWDAAAKAFGVSLNSALLKGPDHLSSLFTVLIRFRERPIALTGDIREMFHQ
FT                 VRIRPEDQQCQRFYWRDDDGNVAVYVMCVMTFGACCSPSSAQYAMNLNAQR
FT                 FAQKYPAAVEVIEKRHYVDDMLVSVDTEEEAVELAKEVRYVHSQGGFEIRN
FT                 WTSNSHRVLEALRGSNTEEKNLDLSPELGTEKVLGMWWCTASDVFTYKVGW
FT                 NRYDSDLWKGRRQPTKREVLRVLMTIFDPLGLIAPFLMFLKILLQEIWRSG
FT                 IQWDDKIDDNAFAKWRSWLRVLPQVEQVQIPRCFCSQTSSEYDDVQLHTFV
FT                 DASENVMAAACYLRFERNSFVWCRLVAAKTRVAPLRYHSIPRLELMAAVIG
FT                 TRLSQTVTESLSITPSKQFFHSDSRDVICWINSDHRRYTPFVASRVGEILE
FT                 ATDQKQWRWVPTKLNVADEGAKWEKFPDMTTESRWFIGPGFLQHSEELWPC
FT                 QSTKGNKTSTELRPSLLTHFSAPDPPINVSSWKRMIKAAALVHRFVTNCRL
FT                 KVQKKSTIHGPPSTEEKQIAERYVIRQAQREAYPDEIAILQKPSKPIPKTS
FT                 SLFKLSPWMDHDGLMRMRGRIDACCQATEDAKNPIILPRDHHTTKLIIAHY
FT                 HYKYNHLNHQTAINELRQRYCIPRLRAAYAKVRYNCQHCKNHRATPQPPIM
FT                 ADLPSERLDAFARPFTHIGVDYFGPLEVVVGRRVEKRWGMLVTCLTTRAIH
FT                 IEVVHTLSTDSCIMGLRNFAARRGTPKTIYSDRGTCFIGASRELMNVAVGF
FT                 NQDDLMKEFGGIETTWKFNPPASPHMGGSWERLIGIVKRNLMAIRPSHKPN
FT                 DEVLRNLLAEIENTVNSRPLTHVPVDDESASALTPNHFLLGSSDGTKPLCT
FT                 LDDSGATLRRTWLNVSTASEPVLETLAE"
XX
SQ   Sequence 6187 BP; 1629 A; 1663 C; 1594 G; 1300 T; 1 other;
     ttttattaaa ttcgtttata ttaacgaatc ggtcaattcg gtcatgtcga gccgcggccg        60
     gtcaaataaa ggcagtaatg ccggtggggg tgatagtgat gcgaatggtg gtgcaactaa       120
     tggtgcgatt ggtggcataa ctgaaggtgg tgcaactggt ggtttaaggg tggtggtcac       180
     cgacgaaacc gtggaaccgg aagcatcatt tcccggtcaa tcgtgtagag tttgccgtcg       240
     agaggacaac gaacaaatgg tgaggtgtga taagtgtctc aagtggtttc actttatctg       300
     cgtgggagtc acccaagcca tcgaagacgt tccgtggagc tgtgctggct gcgagagctc       360
     aacacaaaat gccaatttgc agttgaatcc agccggcgtt gctgcttctc acggaggtac       420
     caagaagaaa tcaaccgttg cagaggacaa taccgcttca acgcatcttc agccaagcgg       480
     ccaggtaact ccaaaaacct caaacacgat caaaccaagc caaacgaagc cgaagaagac       540
     caccaagaag ctctctaagg ataagtctcc gatgttggag tcggtacctc cgaaggacgg       600
     gcattcccag atggacagct acaagtttcc gtcaaagaat attgagccag cgctggaagt       660
     cggtgagcaa cagtattata gcatcaagta tccatcgaag atcgttgagc caccggttcg       720
     aaaggctaat tctgtgtcat ctcatacgtc aagtcatgcg tccagtagat cgtcgcaatc       780
     tatcgccaag ctgaagctgc agaagttgga ggaagaacga attcttaatt cgaagaagtt       840
     ggagcaagaa cgcctctact tggaggagaa atatagactt ctggaacaga tggctagtga       900
     aagcggatca gatgtgcaca gccagtcaga cgtcgtaagc ggatggctcc ctagagcaga       960
     atcgagtcaa cggtcgtttg ttcctgaacc cgtccacctc gccgccaatt ccgtcgtcaa      1020
     ccttcgaccc agagcaggcg aagaagcgct ccgtagcgcg cagcgtgaat taccgcagta      1080
     tcagcctgct gccaatcgag ccttcgaaga cgaacaccgt agtggcgtcc gagaagttcc      1140
     gcagcatgct agtcgcctgc cggagtatga tgaagatcgc tgtccgttaa ccaagaagca      1200
     gctagcggcg cgacaggccg tttccaagga tctgcccccg ttttccggca accccgagga      1260
     ttggcctcta ttcatagcga cattcaacaa cacgacggcc atgtgcggct tcacaaacga      1320
     cgagaacatc ttccgattgc agaaaagtct gaaaggacgt gccttcgaag cagtgaagag      1380
     ccgattagtt catcctgcca acgttcccgg cgtgctgaag actttgaaga tgatgttcgg      1440
     gcagccagaa gccattgttc atacgctgat cgaaaaaatc cacgctttgc cggccattag      1500
     agaagacaga ctggaaactc tggtggactt cgccgtcagt atcgagaact tctgcgcgac      1560
     tgtggatgcc tgcggcttgg atgaatacct gtacaactct actctcctgc atcagctagt      1620
     tagcaagcta ccaccaacta tcaagctgaa ttgggcgcag tacaggatcg cacttccggg      1680
     agtcaattta gcggcgttta gcgcttggat atactccctc gctgaagctg ctagtgcagt      1740
     tacaatccca aacgtagtaa actccagacc aatccggagt gagagtcgca caacaaagaa      1800
     gggaaatgcc ttcgtgaacg ctcattccga aaacgcctct tcagaatctc gttcaccaaa      1860
     tccttcgagt gggaagcgct cgaacgccaa cggagaatgt ctcgtttgca aaggagcctg      1920
     caaggcggtc gacaagtgca agcggtttct agagttttcc cgcgattcgc gctggtccac      1980
     ggtacgagaa ttcggactct gtcgtcgttg tctcagccga cataacggcg agtgtcaagc      2040
     caaactttgc ggaaaggatg gttgccagtt caagcaccac gcgctgctgc acaaagacca      2100
     aaagcaacaa tcacccgctt caccaacaac gcagtcatct cctgcatcgg tcccatcgac      2160
     gacggacggt acggagcctc ctaagacagg agccggtcct tcgacgcata gttgccacgc      2220
     acatcagact aaatcgagcg acgtactgtt tcgctatctt ccggttgtgc tacacggcaa      2280
     gtatagatcg gtccgtacac acgctttcct cgacgacggt tcggatctca cgctactcga      2340
     cgaagagtta gccgatgaac tagagctaga tggagaagtg cggtcgcttt gtcttcaccg      2400
     gaccggtggc gcgcgacgtc gagagaaaaa gtctcggatc gtcgaactcg agatagctgg      2460
     tgtacacaaa ggagctaaga gtttcacaat caacggcgca cgtactgtga acgaacttat      2520
     gcttccgcac cagacgatgg acaccgaaga actcgcatcg ctttaccctc acctaatggg      2580
     nctgccgctc gaatcatacc acagcgttcg gccacgtatc ctcattggcc ttaagaacca      2640
     gcatctcagc cttgcgctca agtgccgcga aggtaaaccg aacgatcccg tcgctgtcaa      2700
     gacccgtcta ggatggacag tttgtggagg aagatccaca gatgtaacca gcccagtgca      2760
     ctccgtttat cacatcggtt cttgcgagga tcagtgccaa gcggacgaag atctacacca      2820
     agttatcaaa gactactttg cgttggatag cttggggatc atgaagcctt ctgaagcacc      2880
     tctctccgtc gaggatcaac gagcgcagtt ccttctccag tcgctaacta agttcacagg      2940
     ggaacgctat gaaaccggtc tactctggcg atacgacgcc gttcgcctgc cggacagtcg      3000
     agcgatggcc cagcgacgtt tccagtgcct tgaaaagcgc atgatgaagg aggaaatatt      3060
     ggctaaaacg ttgaaggaga aaatgaccga ctacctgaag aaaggctaca tacgaaggtt      3120
     atccgacgaa gaattgcggc aaccatcaca gcgcgtttgg tacctcccag tgtttccagt      3180
     gacaaaccca aataaaccag ggaacgtaag gatcgtatgg gacgctgcgg ccaaagcatt      3240
     cggagtatct ttgaattctg ccttgctgaa aggtcccgat catctttcgt cgttgttcac      3300
     tgtattgatc cgtttccgcg aacgtcccat agccctgact ggcgacatac gggaaatgtt      3360
     ccaccaggta cggatccggc cagaagacca gcagtgtcaa cgtttttact ggagggacga      3420
     tgatggaaac gtagcggtct acgtgatgtg cgtcatgaca ttcggcgcct gttgttctcc      3480
     cagcagtgcc caatatgcga tgaacctcaa tgctcagcgc ttcgcccaga aataccctgc      3540
     agcggtggag gttatcgaga aacggcacta cgtcgacgat atgttggtaa gcgtcgacac      3600
     agaggaggag gcggtcgaac ttgccaaaga agtgaggtac gtccactcac agggcgggtt      3660
     cgaaatacgt aattggacca gcaactctca tcgcgtcctg gaagccctac gtggaagcaa      3720
     cacggaagag aagaatcttg acctttcgcc agaattggga acggaaaagg tgctcgggat      3780
     gtggtggtgc acagcttcag acgtgttcac ctacaaagtc ggctggaacc gttatgatag      3840
     tgatctgtgg aaaggtcgcc gccagcccac gaaaagagaa gttctacggg ttctgatgac      3900
     gatcttcgac ccccttggac tcatcgcgcc attcctcatg ttcctcaaga tcttacttca      3960
     agaaatctgg cgcagcggaa ttcaatggga cgacaagatc gatgacaacg cctttgccaa      4020
     atggcgcagc tggctgcgag tgctgcctca agtcgaacag gttcagatac ctcgatgctt      4080
     ctgctcccaa acctcttcgg agtacgacga cgttcagcta cacacattcg tagacgcgag      4140
     cgaaaacgtt atggctgccg catgctacct acgatttgag cggaatagct tcgtttggtg      4200
     ccgtttagtt gccgccaaaa caagagtagc acctttgaga taccactcta tcccgcgact      4260
     tgagctaatg gcagctgtca tcggtacacg actctcccaa acggtcaccg aatctctgtc      4320
     aatcactcca agtaagcagt tcttccactc ggactccagg gatgtgatct gctggataaa      4380
     ctcggaccat cgtcgttaca cacctttcgt tgccagccgc gttggcgaga ttctggaagc      4440
     tacggaccag aaacaatggc ggtgggtccc gacaaagctt aacgtagctg acgaaggcgc      4500
     gaaatgggag aaatttccgg acatgacgac agagtcgagg tggttcatcg ggccagggtt      4560
     tttacagcat tcggaagaat tatggccgtg tcaatcaacg aaaggtaaca agacatcaac      4620
     agaactccgt ccttcgctgc taactcactt ctccgcacca gatccaccaa tcaacgtctc      4680
     cagctggaag cggatgatca aggctgcggc actcgtacac cgtttcgtta cgaactgtcg      4740
     tctgaaggtc cagaagaagt ccactattca tgggcctcca tccacggagg aaaagcagat      4800
     cgccgaacgc tacgtgattc gtcaagctca acgagaagcc tacccagacg aaatagcaat      4860
     tctgcagaag ccgtcgaaac ccattcccaa aaccagttct ttgtttaaac tatctccttg      4920
     gatggaccac gacggattga tgcggatgcg aggaagaatc gacgcctgtt gtcaagccac      4980
     cgaagacgct aagaacccaa ttatccttcc acgagaccac cataccacca aacttattat      5040
     cgcacactat cactataagt ataaccacct taaccaccaa accgcaataa atgaactccg      5100
     ccaaaggtac tgcataccac gactacgagc ggcctacgcc aaggtacggt acaattgcca      5160
     acactgcaaa aaccaccgcg ccacaccgca gccacctata atggccgacc ttccttcaga      5220
     gcgactcgac gcattcgccc gtccctttac ccatattggc gtcgactatt tcggtcccct      5280
     cgaagtcgtc gtagggcgcc gcgtggagaa acgatggggc atgctggtaa cgtgcctgac      5340
     tacgcgtgca atccacatcg aagtggtgca cactttgagt accgactcgt gcatcatggg      5400
     tcttcgcaac tttgcagcac gtcgaggcac acctaaaacg atctacagtg atcgcggcac      5460
     ttgcttcatc ggcgcgagcc gtgaattaat gaacgttgcg gttgggttca accaggacga      5520
     tttgatgaag gagtttggtg ggatcgaaac aacttggaaa ttcaaccccc cagcctcacc      5580
     gcacatgggc ggcagctggg aacgcctaat aggcatcgtg aagcgaaacc tgatggcgat      5640
     tcggccgtct cacaagccta acgatgaagt gctacggaac cttctagccg agatcgagaa      5700
     caccgtaaac tctcggccac taacgcacgt cccagtagac gatgagtccg catccgcgct      5760
     cacccctaat cacttcctct tggggtcatc ggatggtact aagccactat gcactttgga      5820
     cgacagcgga gcaaccctac gacggacctg gctgaatgtc tcaacagcta gcgaaccagt      5880
     tctggaaacg ttggctgagt gactatctgc cggagatcac tcgccgaacg aagtggtaca      5940
     ccgatacgaa gcctattgct atcggcgaca tagtggtcgt cgtcgatcca aagcttccca      6000
     ggaactgctg gcccaaaggt aaggtcatcg gtactagcat cagccagaag gacaacaaga      6060
     tcagggcggc caccgtgcaa accaccaccg gagtgttcga acgtccggta gccaagctgg      6120
     ccgtgctgga tgtacggcgc gacgaaatgt aagccgacca gatcatcggc gtacccgggg      6180
     ggagtgt                                                                6187
//
ID   BEL-255_AA-LTR repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-255_AA_;
KW   BEL-255_AA-I; BEL-255_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-793
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2519-2519 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 793 BP; 279 A; 151 C; 128 G; 235 T; 0 other;
     tgagtacgcg cctctctatc cagcatctct aatctacaca catcaacaaa cgtaggtatc        60
     gcatgcaacc ttctcccctg aggcccttgg tcaaacgtca tggccaatac gctattgtgg       120
     tggacagata agatacaatt gatacagcgt ataatatcaa cagcgctcat gtgctccttt       180
     gagtttctaa aactacatct aaaatagtgt tacatgcaat aagaatctag aaaattgtgc       240
     aataatagtg tgaactaaat gggtaacatt ctatcaactt gaattacgtt gaaattcata       300
     taatttaata gtaaacttat ctacagtgtt cacttaacgt ctagtgcatt tttctaacct       360
     aagatctaca taaatctaaa acctacatgc aaaggtaaat gaaattagct aaattatatt       420
     gaaatactta aacctagatt gttttagtac ggtgaggatc tagtacggta aatttgatat       480
     tgctaaggtg attagtagga aaaggagatc gcaacaatcg caagaccgga ttgatcatcc       540
     gcaaacaccg cacaacggga ctaaacgtaa gtcaatacgg acatattata ctaaagttca       600
     caatctatta ttttaactaa atctaaatgt aaaatggcac gcaatatgta aactaacacg       660
     tacgtacatg aaataatttc aggaatttaa taatagccac atttaaacgt aaatcctacg       720
     tctccggtcg tttatgctat tattagtttg gaaataaacc ctgtgcgttt cttcgttgga       780
     cacatttcca aca                                                          793
//
ID   BEL-256_AA-I repbase;    DNA;    INV; 6994 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-256_AA_;
KW   BEL-256_AA-LTR; BEL-256_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6994
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2520-2520 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5987-6577] - Integrase core
CC   'GACAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4724..5905
FT                 /product="BEL-256_AA-I_3p"
FT                 /translation="MMQEIAVLKTGWDAPVPAPLERKWKLFHSSLSKLAEF
FT                 GISRFAFVGDYVDVQLHCFADASEVAYGACIYVRSVDRHGTARIELLSAKS
FT                 RVAPLQRMTIPRLELCAAREAAHLYQTVTKALALNGIEAYFWSDSTLVLHW
FT                 LRSPPNTWKTFIANRVSTIQTETYGHPWQHVAGKENPADLVSRGIPVDDFL
FT                 KNDLWKKGPYWLKESPSSWLSENVEPIPDDADLEHRIVVQANVVAVEPNSI
FT                 FSLRSTLLPLIRIVAFCLRFLNNCRRTSQRKNAVFLTAPEINAAKMALVRL
FT                 VQQEIFSEEIKSLKKTYQVSPKSLLKLLSPFIDKEGIIRVGGRLRYSLEDY
FT                 ATRHPAVLPQSHVFTRMLIEYYHLQTHHGGHQATLSVMRQEFWPIHGKRAV
FT                 "
FT   CDS           join(1619..2557,2561..3607)
FT                 /product="BEL-256_AA-I_1p"
FT                 /translation="MAGGIKDKIKKRERLFAAVRRHVQFLEGYDEATQQGQ
FT                 VQSRLDKLEAAWDEFQDLQEEICELDTKGEAEQETNYAYAAFEKQYYEVRA
FT                 ALLGKLANDPQPVGGNPDYTFRNNSALGMHTGVRLPQISLPEFDGDYKGWL
FT                 CFKSTYISLIHESQELSDVQKFHYLKSAMKGEAAKLIESLTITNDNYAIAW
FT                 DTITKRYSNEYLLKKRHLQALMDFPRIERESAVKIHGLVDEFDQRLKILKQ
FT                 LGERTEHWGAMVVHWMCSKLDTHTLQLWEDHAASLRDPTFTALVDFLEKRT
FT                 RVLDAVQSNIGKVSSLLPKAPKPRERLAVYAATENTRSDPTCQCCGEQHYL
FT                 VRCGKFQNFGLKEKLDFVNGKRLCSNCFKVGHWVRECSSKFSCKTCGKKHN
FT                 TLIHPGFQSSSGGSNNSGSEGSGSSSGTGRKGDAARSHVVSEAVEDEQLEA
FT                 AELSTAGSYSVGAKQGSCRSSVFLSTVVVWIRDQFGGRQLARALLDSGSEV
FT                 NVMSERLSQMLKLKRRTIYVPITGIGKAESTAKHAVNATVSSRVTDFAVGM
FT                 DFLVLQRVTSDLPSFSTPVSHWNIPKNLQLADPEFNISGRIDLLLGAEHFF
FT                 RFLFEREMKRVALGPGLPMLIDSVFGWIVSGRDASLQQTRSVRCCTVTATE
FT                 PLEELLERFWKVE"
XX
SQ   Sequence 6994 BP; 1845 A; 1625 C; 1793 G; 1713 T; 18 other;
     ttttggtgcc gtgaccagga tcggcggttt agttaagaag atctgtggct aggaggacaa        60
     ttgggctatt gtcgtattgt tcctgaaaaa cgcggacttt ggacggtgtt ggatccatat       120
     tgctggcagt ttaccgcggc gaaatatttc aacggtttac ttatcagtct catcacccgg       180
     agagattcac aacaacatct acacaacggt cgcatttgga tgtggaaacc actatatcac       240
     acaacggagt ctgttgcgat atcactacgg agagctgcaa cactttcgag tcgcgcggct       300
     ggcaatcttc taagtatcgc atcgtagctg ttggataatt aaatacaagg cctaattgaa       360
     ttaggccaca ggtgagtggt ggtcctaatt tcttaaattg ttttgtacgg tgctacttgg       420
     atctgttttc tccttttctg tgacgcgcgc aatcatcggt ggggactacg tgactacaac       480
     cgtcgcaatc acatttgcga ggaggccaat ctaaccgcag gcgtgctaat ggtgatcgac       540
     attcttcgac tacacgtgac tattcggttt ttgatcgagt taccgaccgt gtgaatcgga       600
     tagtggtttg gtggaacaat agaaatatta gtagtagaac gctaatggcg ctgttgtcac       660
     aaaattgatt taattaatta ttacctttaa ttgttatttt tcattaattg atcgatccca       720
     cgcaacagag aatgttttgt tttggccttt gacactttga ggcccggtac tcacgctgtc       780
     aaatcgcagc aaactagatg ttggtcacac gaacagcagc gacattagca ttcttaggtt       840
     aatgcttcta ctggtggaac caagcagacg tggatactca tctctatcgg ttaatcgcat       900
     catcggttgg gttcgtttga actcgttgga ctacacgtgc tcgatcggct tacggcttcg       960
     ggaaaacggt gcacatctgt gccgttgttt acgcctcgtt gctgcaggat atataataca      1020
     aggcctgttg ttgacaggcc tcaggtgagt gcctgtccaa tatattaccc ctcttgttgt      1080
     ggtgcttctt ggttttttat tacccttcca tgtacctatt ggactgagtc gtcggtggat      1140
     cggcttcata ggactgttta cgtctggatc gtgcccggcg gtgtaagtgc ggctttggtc      1200
     ggtggataac aacagctata catacataac tgctacctgt tgctgcgatc tacgctagga      1260
     cgtttggttt ggacgagcga gaagcggtaa gcgatatctg aacaattttt gggatcgatc      1320
     aaatgggatc gagtcgcgtt tagtactgca catattattg cctgctgtgg acagactaca      1380
     gaaacactaa cgaagcgatt ggcctagata actatagact gggccagtaa tatcagacaa      1440
     gtcacggggc cggaatttgc cgaattttgt atatatacaa ggcctgaata cgacaggtca      1500
     caggtgagtg actgtccatt gactctattg tcgtatcggc ggtacttcct gggtcttttt      1560
     tgattatcat ttccggtcca ttgcttgctc cgaggattgc ggatctgata gtgtgggtat      1620
     ggctgggggc attaaggata aaataaagaa gcgcgaacgg ctgtttgctg ccgtgcgtcg      1680
     acatgtgcag tttttggagg gatatgatga ggcaactcaa caagggcaag tccaatcaag      1740
     attggacaaa ttagaggcag cttgggatga gtttcaagat ttgcaggagg aaatatgcga      1800
     gttagacacg aagggtgagg ctgagcagga gacaaactac gcgtacgccg cgttcgagaa      1860
     acagtactac gaggttcgtg cggcattact ggggaaattg gcgaacgacc cacaaccggt      1920
     gggaggaaat ccggactaca ctttccggaa taacagtgcg ttgggaatgc acacaggagt      1980
     tcgtctgccg cagatttcgt taccagagtt tgatggggac tacaaggggt ggctttgctt      2040
     caagtcaact tacatatcgt tgatccatga atcccaggaa ctcagcgacg tgcagaaatt      2100
     tcattatttg aaatctgcca tgaaggggga ggcggccaag ctgatcgaat ccctaacgat      2160
     cactaacgat aattatgcca tagcatggga cactatcaca aaacgctact ccaacgaata      2220
     cctgttgaag aaacggcatc ttcaggcgtt aatggacttc ccacggatcg aaagggaatc      2280
     agcggtaaaa atacatggat tggtggacga attcgatcaa cgattgaaaa ttttgaagca      2340
     gctgggcgaa aggacggagc attggggagc tatggttgtc cattggatgt gttcaaagct      2400
     ggatacgcac accctgcagc tgtgggagga ccatgcagca tcattgagag atcccacttt      2460
     tactgcattg gtggattttt tggaaaagcg cacgagggtt ttggatgctg tacaatccaa      2520
     cattggcaag gtcagcagtt tacttccaaa ggcaccancc aagcccaggg aacggttggc      2580
     agtgtatgct gcaacggaaa acaccagaag tgatccaaca tgccagtgtt gcggcgagca      2640
     gcattatttg gttcggtgcg gtaagttcca gaactttggg ttgaaggaaa agctggattt      2700
     cgtcaacggc aagcgtcttt gcagcaactg cttcaaagtt ggtcattggg tgcgtgaatg      2760
     cagctcaaaa ttcagctgca agacatgtgg gaagaaacac aacactctca ttcatcctgg      2820
     gttccaatcc agtagcggtg gcagcaacaa tagcggatcg gaaggcagtg gttcatcaag      2880
     tggcactgga aggaagggcg acgcagcaag gtcgcacgtt gtatcggaag cagtggaaga      2940
     tgaacaactc gaagcagcag aactatcgac agcaggatca tacagcgtag gagcaaaaca      3000
     aggaagctgt cggtcaagtg tatttctgtc tacagtggtc gtgtggatac gggatcagtt      3060
     cggagggcgg cagctagctc gtgccttgct agatagcgga tcagaggtga acgtgatgag      3120
     tgaacgtctg agtcaaatgt tgaagctgaa gcggcggaca atatacgttc ccatcacggg      3180
     aattggaaag gcagaatcta cggcaaaaca tgcggtcaac gcaacggtta gctcccgagt      3240
     cactgatttc gcggttggaa tggacttctt ggtattgcag cgagtgactt ctgatttacc      3300
     ttcgttttca actccagttt cgcattggaa catcccaaag aatcttcagc tggcggatcc      3360
     tgagttcaat ataagcggcc gcattgattt gctgctgggg gctgaacatt tcttcagatt      3420
     cctatttgag cgggagatga aacgggtggc tctcggtcct ggactaccaa tgctcataga      3480
     ttcggtgttc gggtggatcg tgtctggcag agatgcaagt ctacaacaaa cgagatcggt      3540
     tcgatgctgt acggtgactg ctacggaacc cctcgaggag ctgttggaaa gattctggaa      3600
     agtggaaagn tgcgacgatc aaccggcatg gtccaaagaa gagcaagact gcgaggagaa      3660
     tttcaagcgg acgcattcga gagcggatga tgggcgatac atagtccagt tgccgaagca      3720
     tccaaatttc ggtcggatgt tgggtgattc aagggcggca gctctggaca ggtaccgaaa      3780
     actggagaac cgactggaga ggaattcgga cgtgaaggaa cagtaccacg ccttcatgaa      3840
     agaatatttg gatatggaac acatgcgaag gatgacggaa gaggagctgc aagcagaggc      3900
     catggaaacg gaaggaatac atcaaagaaa ggccttctac ttgccgcatc acgcggtgct      3960
     caaagaatcg agcacaacaa ctaaggtgcg cgtcgtattt gatgcttcgg cgcgctcgga      4020
     caccggatac tcnctcaacg atgtcctgtt gaaagggcca gtaattcagg aagagttgct      4080
     caatcttctg attcgtttcc gcaaacacga agtggcactt gttggagatg tagcaaaaat      4140
     gtataggcag gtgctacatg atgccaacga cgctctacgc ctgagaatat tttttcgttt      4200
     cgagaaggat gaaccaatcg acgtctacga gctgcttacg gtgacgtacg ggctaaaacc      4260
     atcatctttt cttgccacac gtgcactaca gcagttggca gtggacgaag gatcagaaaa      4320
     ctccccagct agcacagcgt tgaagaacga tttctacgtg gacgactata ttggtggagc      4380
     cgcaancgtg gacgaagcta tcggtctacg taaaganctg acgtcgttga tggccaaagg      4440
     aggattccca atacggaaat ggtgttcaaa tcgcccggag gtcctggctg gtattccgga      4500
     ggaccaatta ggaacaaatc ttacaatnac attcgaccta agcccagaag aaagggtcaa      4560
     aaccctgggg attacttggg aaccgaaagc cgaccaactn cggttcctgt tcaacattga      4620
     tgacgatcag aatgaatgga ctaagagacg aatactgtct gcaatagcaa agctgttcga      4680
     tcctcttgga ttgatatctc ccgtcgtggt aaccgcaaaa atcatgatgc aggagatagc      4740
     agtactgaaa actggatggg atgctccagt acctgcaccg ctagagcgaa aatggaaact      4800
     cttccatagc agtttgtcca agctagcaga attcggcatc tctagattcg cctttgttgg      4860
     ggattacgtc gacgtacagc tacactgctt tgccgacgcc tcggaagtgg catacggtgc      4920
     ttgcatatat gtgcgctctg tggatcgcca tggcaccgcc cgaatcgaac ttctatctgc      4980
     aaaatctcga gtggctccac tacaaagaat gactatccca agattggaac tatgtgccgc      5040
     tcgngaagct gcacatcttt atcagaccgt aaccaaagcc cttgcactga atggcatcga      5100
     ggcttatttc tggtcggact caactctggt tcttcactgg ttgagatctc cgccaaatac      5160
     gtggaaaact ttcattgcga atcgtgtttc cacaattcaa accgaaactt acggacatcc      5220
     atggcaacat gtggcgggta aggagaaccc tgccgatttg gtttctcgcg gaattcctgt      5280
     agacgatttc ctgaaaaatg atctctggaa aaaggggcct tattggctga aggaatcacc      5340
     ctctagttgg ttgtcagaaa atgtggaacc aattcctgat gatgcggatc tggaacaccg      5400
     aatcgtcgtt caagcaaacg tcgtagcagt ggagccgaac tccatttttt ctctccgatc      5460
     tacgctactt cctctcatca gaatagtcgc cttctgtcta cggtttttga acaactgcag      5520
     gcgaacatcc cagcgcaaaa atgcagtatt tctcactgcg ccagagatca acgctgctaa      5580
     gatggctctc gtacggttag tgcagcaaga aatcttctct gaggaaatca aatccttgaa      5640
     gaagacctac caagtttcgc ctaaatctct gttgaaactt ctaagcccnt tcatcgacaa      5700
     ggaaggaatc ataagagtag gaggccgcct acgctattcc ctcgaggact atgccaccag      5760
     acatccagcn gtccttccgc agtcacatgt cttcacccgt atgcttattg agtactacca      5820
     tcttcaaacc catcacggag gacatcaggc gaccctctct gtaatgagac aggagttctg      5880
     gccaattcat ggtaaaagag ctgtcnaatc cgtccttcga aaatgctatc gctgctttcg      5940
     cttcaatccc agaccaattg agcagccgat gggtcaacta ccctccgccc gagtacgccc      6000
     tgctcgagcc ttcgttaaaa ctggtgtcga ttactgcgga ccctttttcc ttaaacctcc      6060
     tcatcgacga gcagccccnc caaaggttta catcgcagtg ttcatctgtt tcaccaccaa      6120
     agcgatccac ctggagctcg tcatggacct ttcttcggct ggattcatct ctgcgttgcg      6180
     tagattcatc ggtactcacg gaatcccaag tgagattcat tccgacaatg cgacgnattt      6240
     tcaaggggca aagcatgagt tacacgaatt gtacaagagc ctcaacagca agactggtca      6300
     acagacgatt ggatccgagc tcgcacacca aggaatatcg tggcacttca taccaccccg      6360
     tgctcccaac tttggaggat tatgggaggc ggcagtccgc tccgccaaaa cggccctgaa      6420
     aagggacatc ggtgccaacc agcttactca cgagaacttc tgcactttgc tcgtgcaaat      6480
     cgcagctgcc ctcaattcaa gacctctttc cccgctgtca gatgacccag tagatatgaa      6540
     agccctcacc ccagcccact tcttgatcgg nacctccatg caagccctcc ccgagcccga      6600
     tctgacagcc ataccctcga accgccttac ccactatcag caacgacagc agatgttcca      6660
     acgatattgg cagcgctgga gccaagaata tctcaccgga cttcagcaat ccagcaagaa      6720
     tcttcagcca agtcccatcc gcgtcggtag cgtcgtagtt ctccgggaag acaacctacc      6780
     ncccctgcaa tggcccttag cgaagatcan cgaggttcat cctggcgcgg atggagtcgt      6840
     gngggtagtc acgatcgaga cgaccaaagg gacgtataag cgtcctgtca ataggatttg      6900
     tcccttgccc acccatcggg acattgcgga atagtttagt tagttaataa gaatactaga      6960
     agntatattg aagcgagttc aagggggccg gtaa                                  6994
//
ID   BEL-256_AA-LTR repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-256_AA_;
KW   BEL-256_AA-I; BEL-256_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-528
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2521-2521 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 528 BP; 197 A; 90 C; 108 G; 133 T; 0 other;
     tgttagattt agtatgaatt atttcttaca ctaatatgaa tttggaatta cttaagctaa        60
     acatgcaaat ttgaacttaa aattggccac cctaaaaact ataactgtta taaaacaccc       120
     atacataact tatacacccg attgtaaaac gaactgaaca caacacatgc agcacaggtc       180
     agtaagaacc tccagatcga ctacatagtc agtagcaaac cgatagccaa ccaataaagg       240
     cggccaacaa ttcgcgcgcg tttgtttgaa tctaagaata aagtggtaat tcaattacga       300
     aataaagtga ctaagttttt gaacagttac tgaagtggag ttgatttgta gaagggaaga       360
     aaaggtacta agtggaagga ttggaaagtg attgatattg tgtcgggaag gattgaggat       420
     tttaaggaat cggagtcgga acgggaaaga aattggaatt acggattaca caacgtagga       480
     aacttcttgg aggtaattaa ctcgaccccg aacctaccaa ccccaaca                    528
//
ID   BEL-257_AA-I repbase;    DNA;    INV; 6378 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-257_AA_;
KW   BEL-257_AA-LTR; BEL-257_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6378
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6378
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2522-2522 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           850..6159
FT                 /product="BEL-257_AA-I_1p"
FT                 /translation="MDDERRKQILTSRRTTLLASLGRAEQFMTQYQEERDK
FT                 LEVELRLENLDVIWQGLEDVQAELEEMEESSEGMVRNLSYRSNFETLLFKI
FT                 KAFLRSKLPAPITVHGNLPQTATTGASSTLKGLKLPTISLPEFSGDYKDWL
FT                 AFHDTFLALIHANPDVADIQKFHYLRAAIKGEAAQLIESIGISAANYQLAW
FT                 DALVSRYANEYLLRKRHLQALLDCPKMKRESASALHAIVDDFERHVKILGQ
FT                 LGEPVESWSTILEHILCTRLHDDTLKAWEDYASTLNAVTYKSLVEFLQRRM
FT                 RVLESISVNQCHQSTPVQPHASFPKKPFPMKVSSHAAIEGSSMKCYACDQR
FT                 HPLIRCFKFEKLPIAEKMNLLNSKRLCLNCFRNDHLARNCNSKYSCKVCQK
FT                 RHHSLIHSAYTENSTRAHVVPSPSKSTVQTNVATSEPVPLLSASTLSEPEE
FT                 SVCSIPMQGCGKNVFMLTVVLKVVDCYGQEHMARALLDCASQPNIISENMA
FT                 QILRLQRSRVNVLIHGVGEKPQQARNSVRTQIRSRKEDFALDVDFLVLKSV
FT                 IPRLPAYEVSTDDWNLPKDLFYADPNFNKSSGIDMIIGNEHFFSCFTSAAR
FT                 IHLSESLPLLVDSTFGWIVSGAANIPKNIPEASACSITTMSLVSLEESLER
FT                 FWEIEELPTRSAYSLDEKNCEELYASTVSRNSEGRYIVRLPRKSNFDELVG
FT                 ESKATALRRFELLERRLDRDSHLKEEYHKFMREYLELGHMRLVSDDELDGA
FT                 MQCFLPHHPVMKDSSTTTKVRVVFDASAKTSSGHSLNEALLVGPVVQDDLH
FT                 AICLRFRTFPVAVVSDVAKMYRQILHHPDDTPFQQILFRFDKTDPVQTYRL
FT                 LTVTYGMAPSAFLATRTLIQLADDEGHTYPLGGPAIRKGFYVDDFIGGAQS
FT                 IXEAIQLRTELGELMAKGGFCLRKWTSNKLEVLQGLESDQIGTQSAIQFDK
FT                 DETIKALGIXWEPEADIFRFEAAIRPTHGPITKRVILSGISQLFDPLGIVS
FT                 PVVIRAKMLMQLLWLQPCGWDDPVSESIASKWKSYAEQLPNLSNFHVPRYA
FT                 LLPKATIQLHSFSDASESAYGACTYARSLDSHGNITVHLLASKSRVSPLKR
FT                 ISLPRLELCAADLATKLHSKISEALQIDISASYFWCDSTVTLQWIRAPPNT
FT                 WKTFVANRVSAIQSASQGAHWNHVAGKQNPADYVSRGMEIDDFIQCTDWKH
FT                 GPEWLSLPEQQWPCERVPDYPTDGKERRKLIVAATRSEPIDPNPYFARFSS
FT                 HTSMVRITAYCLRFINRCRGKCRTLSPNSSPLPSRILSQPELTTAQLVLVK
FT                 LVQADGFKEELKCLHNGNAVSKRSPVRRLSPIIDPDGIIRVGGRLNLLEQP
FT                 YITKHPILLPNPHPYTRLLAKYYHLRLIHGGGRLTLAAMREXFWPIRGRRL
FT                 VQSIIHACFRCTRASPVPATQQLGQLPVHRIRPSRPFSITGVDFAGPVYLK
FT                 AIHKRAQPAKAYICIFVCFSTKAVHIELVGDLSTSAFLAAFRRFVSRRGRP
FT                 SDVYSDNGKNFEGAKNTLEEVCRLLQDNAESIHSFCATETINWHLCPPKAP
FT                 HFGGLWEAAVKVAKTHLYRQLGNSRLTFEEMATLLTQIEAAMNSRPLVPLS
FT                 EDPNDLACLTPAHFLIGSTMHAVPEQDLTKAPISMLDRLQATQRTYQQFWH
FT                 HWRSEYLQELQLCTKNSKPNNAFLPGRLVILVDEQQHPVKWPLARIVDTHP
FT                 GNDQLTRVVTLRTARGIIKRPITKICLLPSYDDLECVPQADENLNDTTAD"
XX
SQ   Sequence 6378 BP; 1659 A; 1707 C; 1423 G; 1579 T; 10 other;
     taaaactggt gccgtgacca ggattgtggc aattctttcc ggcgaagaca tctccgaccg        60
     tattcgcctt ccatccgcgg gacaacgaag cccgcttgac tcgccatctt tgacgccaag       120
     gactggacaa taccgattgt tccacctgta ttgtggaaca ttctcgacgc catactagcc       180
     atccggctat tgagtattcc gccatcaaag cctaccctga ataggaacaa agaggaccta       240
     ttgtgacccg gagccacgcc aaccgccatt gtggtaccat ccgacctggt gtttcgaatt       300
     cctggagtgt tcctgctttt ctcaaaaata caaggcctgt tgagaacagg caaaaggtaa       360
     ttgcctgtcc aacctctttt tcccgtgttt gctggtgctt tttagatcct ttttgctttg       420
     catgtgcatg ccgattgatg ccgatctacc ctatcggtga aagtgaaagc ccgccatcca       480
     cgagttgatt ccgtacgccg tgctacaaac gagacccgtg tattacgatt cmgattcctg       540
     cgattccaaa ccacgccgtg gtggttcaca tcagcgtatg cagcagtgaa gcctgcgact       600
     cactacggga taaaatcctg cgcggttttt ccgacgtgtc catttgctga ccttgtggac       660
     catccgtgac tacgccgcag tacccaagta cagcccatcc gctcgttctt cgttgagttc       720
     ctgttttttg gaattataca aggcatattg actgccttgg tcaggtgaga acctctccaa       780
     gagattattt tcttttgcgc cagtgctccc tggtctttcg ttcgatagat tcccgagctc       840
     gctgaaatca tggacgacga acgccgtaag cagatcttga catcccgtcg caccaccctg       900
     ctagcctcgc tgggacgtgc ggagcagttt atgacgcaat accaggagga acgggacaag       960
     ctcgaggtcg aattgcggct ggaaaaccta gatgtgatct ggcaggggtt ggaggacgtg      1020
     caggccgaat tggaggaaat ggaggaaagt agcgaaggca tggtgagaaa tttatcctat      1080
     cgctctaact ttgaaactct gctcttcaaa ataaaagcct ttctacgctc taaacttcct      1140
     gctcctatca ctgtgcacgg aaatctccct caaaccgcta ccactggggc ttcttccact      1200
     ctaaagggtt tgaaactgcc tactatctca ttgcctgagt tctctgggga ctacaaagac      1260
     tggttagctt ttcacgacac atttctggca ctaatacacg cgaacccgga tgtggcggac      1320
     atccaaaaat tccactattt aagagctgct atcaagggcg aggctgctca attaattgag      1380
     tcgattggga tcagcgctgc taattaccaa ttggcgtggg acgctctcgt ctcccgttac      1440
     gcaaacgagt atctccttag gaagcgtcat ctacaagcct tgctggactg tccgaagatg      1500
     aagagagagt cagcgtccgc cttgcatgcc atagttgatg atttcgagcg acatgtaaag      1560
     attctaggtc aactgggtga gcctgtcgag tcatggagta ccatcctaga acatatcctg      1620
     tgtacacgat tgcacgatga caccttgaag gcctgggagg actacgcgtc taccttgaat      1680
     gctgtcacat acaagagcct cgtcgaattc ctccagcgtc gtatgcgggt cctcgaatcg      1740
     atttccgtta accaatgcca ccaatcaacc ccagtgcaac cacatgcctc gttccccaaa      1800
     aagccattcc cgatgaaagt ttcctcccat gcagccattg aaggttcgtc gatgaaatgc      1860
     tacgcttgcg accaacgtca tcctctgata aggtgcttca aattcgagaa attgccgatc      1920
     gccgagaaga tgaatctgct caactccaaa cgcctctgtc tcaactgctt ccgtaatgat      1980
     catctggctc gaaactgtaa ttcgaagtat agttgcaagg tttgccaaaa acgtcaccat      2040
     tcgttgattc actctgccta cacagagaac tccacccgtg ctcatgttgt tccgtctcct      2100
     tccaagtcca ccgtacaaac gaacgtggcc acctctgaac cagttccact gctatcagcg      2160
     tccacactgt ccgagccaga agaaagcgta tgtagcatmc cgatgcaggg ttgtggaaaa      2220
     aacgttttta tgttgactgt agttctcaaa gtcgtcgact gctacggtca agagcatatg      2280
     gcaagagctc tcttagattg tgcatcccag ccaaatataa tctccgagaa catggcccag      2340
     attctgcgtt tgcaacgcag cagagtaaat gttttgattc acggtgttgg tgaaaagcca      2400
     cagcaggcaa gaaactctgt ccgaacccag atccgctcac gaaaggaaga ttttgctctc      2460
     gatgttgact ttttggtcct aaaaagcgtc attcctaggc tccctgccta cgaggtgtcc      2520
     accgacgact ggaatcttcc caaggacctc ttctacgccg atccaaactt taataagagc      2580
     tctggtatag acatgatcat tggcaacgaa catttcttct catgtttcac atcagctgcc      2640
     agaattcact tgtcagaatc gttacctcta ctggtagata gcacctttgg ttggatagtc      2700
     tctggtgcgg ccaacattcc taagaacatt cctgaagcat ccgcttgttc catcactacc      2760
     atgtccttgg tmtcactmga agaaagtttg gaacgttttt gggagattga agagcttcca      2820
     actcgatctg cctactcatt agacgagaaa aactgcgagg aactttatgc atccactgtc      2880
     agtcgaaact ccgaagggcg gtatatagtg cgattaccac gtaaatcaaa tttcgatgaa      2940
     cttgttgggg aatccaaagc cactgcgtta cgtcgctttg agctgctcga acggagactt      3000
     gatcgtgact cccatcttaa agaagaatac cataaattca tgcgtgagta tttggaacta      3060
     ggccatatgc gattggtctc cgatgatgaa ctagacggcg caatgcaatg tttcctaccc      3120
     catcaccccg tgatgaaaga ctccagcaca acgacaaagg tacgggtcgt ttttgatgcc      3180
     tccgccaaaa cgtcttcagg tcactcactg aatgaagcgt tacttgtagg acctgtagtg      3240
     caggacgatc ttcatgcaat ttgtctccgt ttccgaacct tccctgtagc tgtggtgagc      3300
     gatgttgcaa aaatgtatcg ccagattttg catcaccccg acgatacccc cttccaacaa      3360
     attttgttcc gattcgacaa aactgatcca gttcaaacct accgccttct taccgtgacg      3420
     tacggtatgg caccgtctgc tttccttgca acacgcacct taattcaact agccgacgat      3480
     gaaggacata cttacccact gggaggacca gcwatcagga aagggtttta tgtagacgac      3540
     tttatcggtg gtgcgcaatc gatccmggaa gcaatccaac tgaggaccga gctaggggaa      3600
     ctgatggcaa agggaggatt ctgtttgagg aagtggacat ccaacaaact tgaagttctt      3660
     cagggactgg aatctgacca aatcggtact cagtccgcaa ttcaattcga taaagacgag      3720
     acaatcaagg ctctagggat aagwtgggaa cccgaggcgg acatcttccg atttgaggcc      3780
     gccatacgac caactcatgg accaatcaca aaaagagtca tcctatccgg aatatcgcag      3840
     ctttttgatc ctttggggat cgtttcgcca gttgtcatcc gtgcgaaaat gttgatgcag      3900
     ctcctctggt tacagccatg cggctgggat gatccagttt cggaatcgat cgctagcaaa      3960
     tggaaaagct acgcagaaca gttgccgaat ctctctaact ttcacgtacc acgttatgct      4020
     ctacttccga aggcgacgat ccagctacat tctttttccg acgcgtcaga atcggcctac      4080
     ggtgcatgca catacgcccg atccctagat tcccacggca acataaccgt ccacctactt      4140
     gcatcaaaat cacgagtttc tccactaaaa cgtatcagcc tccctcgact agaattgtgt      4200
     gcagccgatc tcgcaacgaa gttgcattcc aaaatcagcg aagcactcca aatcgacatt      4260
     tctgcttctt acttttggtg tgactccacc gtgacactcc aatggattcg agctcctccc      4320
     aacacctgga agacgtttgt ggccaatcgt gtttcagcta ttcaatcagc tagccaggga      4380
     gcgcactgga accacgtagc tggcaaacag aatcccgctg actacgtttc gcgaggcatg      4440
     gaaatcgacg atttcatcca atgcacagat tggaagcacg gccccgaatg gctttcgcta      4500
     cccgaacagc aatggccgtg tgaaagagtg ccagattatc caacggacgg aaaagaacgc      4560
     cgaaagctca tcgtagcagc aaccagaagc gaacctatcg acccgaatcc ttatttcgct      4620
     cgattctcct cgcatacatc aatggtccgc atcactgcat actgcttgcg attcattaac      4680
     cgctgtcgtg gaaaatgtcg cacactttcc cccaatagta gtccactacc cagtagaatc      4740
     ctttcacaac ccgagctcac cacggcccaa ctagtattgg tgaagttggt tcaggctgat      4800
     ggtttcaagg aagagttaaa atgcctccac aatggcaatg cagtttcgaa aaggtcgcca      4860
     gtccgacgct taagccccat aatcgaccct gacggtataa ttagagtggg agggagatta      4920
     aatctgttag agcaaccata cattactaag caccctatcc tcctaccaaa ccctcacccc      4980
     tacacacgcc ttctcgctaa atactatcac ctacggctaa tccatggtgg cggccgactc      5040
     acattagccg caatgcgtga amatttttgg cctatccgtg gacgaaggtt agtccaaagc      5100
     atcattcatg cctgcttccg ctgcacccga gcaagtcccg ttccagcaac gcaacagctt      5160
     ggccagcttc ctgttcatcg catccgtccg agccgaccat tcagcatcac cggagttgac      5220
     ttcgctgggc ctgtgtatct gaaagccatc cacaaaagag cacaaccagc gaaagcctac      5280
     atctgcatct ttgtgtgttt cagcactaaa gccgtccaca tcgagctcgt tggggaccta      5340
     tcgacctcag ctttcctggc ggcattccgc agatttgtat cccgtcgtgg tcgtccttcc      5400
     gatgtctact ccgacaacgg gaaaaatttt gagggagcaa aaaatacgtt ggaggaagta      5460
     tgtcgtctgc ttcaggacaa cgccgaaagc atccactcct tttgcgcwac cgaaaccatc      5520
     aactggcacc tctgtccacc aaaggcgcct cattttggtg gattatggga ggcagctgtt      5580
     aaagttgcca aaacccattt gtatcgccaa ctcggaaact ctcgtctaac attcgaggag      5640
     atggcgaccc tattgaccca aatagaggca gcaatgaaca gccggccgct agtgcccctc      5700
     tcggaagatc caaacgacct ggcgtgccta actcctgctc acttcttaat aggatcaacg      5760
     atgcacgcmg tccccgaaca ggatcttacc aaggctccta tcagcatgct cgatcgtctc      5820
     caagcgacac agcggacata tcagcagttt tggcatcatt ggcgaagcga atatttacag      5880
     gagctgcaac tatgcaccaa gaacagcaag ccgaataatg catttctccc cggccggttg      5940
     gtaatcctcg tcgacgaaca gcaacatcca gtgaagtggc cactcgcccg catcgtcgat      6000
     acccatcccg gcaacgatca gctcactcga gtagtgacct tgaggactgc tcgtggtata      6060
     atcaaacggc cgataacaaa aatttgtttg ctgccttcct atgatgacct ggagtgtgtg      6120
     cctcaagccg acgaaaattt aaacgacaca accgccgact aagatgatag cgacacagat      6180
     ccagcaatca gcagtacatt agtagtggaa acgtctagaa gaaagataaa gtgcgatagt      6240
     gttagtaatt agttaagcaa catttacact ttgtttcctt ttatatgata ttcaatttga      6300
     aatcttttag tggcgcgtag aaatagttga taccattgca ttgaattatt gaaattgaat      6360
     atttcaaggt ggcggtga                                                    6378
//
ID   BEL-257_AA-LTR repbase;    DNA;    INV; 410 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-257_AA_;
KW   BEL-257_AA-LTR; BEL-257_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-410
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2523-2523 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 410 BP; 131 A; 86 C; 80 G; 113 T; 0 other;
     tgttcaggac cgggtataat tcgtaatgta gaatccagat atccattaga tcgactaatg        60
     tcaaatcgaa actacgctat tcaccattac attgatagaa atcagctcta tactctagta       120
     ggtagtaaat cgttaaatac agaaataaag tcagtcgtta tcagaaagtc aaccgaacca       180
     gttggaatat agttcaaccc aaattgtagt gcagtgcacg gtaaaaatta ataaagttat       240
     ttaaagtgaa ggtatactcc gttcctgttc accgattata acccgaagaa ggaactacgc       300
     agactatctg gtgccttgat gaccatttct cgttggatgg tgagtcgttg tcattgaagt       360
     agggtccttt cgaagccaca tcctgccact cccgaaccgt tgccccaaca                  410
//
ID   BEL-258_AA-I repbase;    DNA;    INV; 5704 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-258_AA_;
KW   BEL-258_AA-LTR; BEL-258_AA-I.
XX
NM   BEL-258_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5704
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2524-2524 (2012).
XX
RN   [3]
RP   1-5704
RA   Bao W.;
RT   "3-terminus is updated.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
DR   [2] (Consensus)
XX
CC   Positions [4761-5333] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..5702
FT                 /product="BEL-258_AA-I_3p"
FT                 /translation="MEPQVRRSGRTNKGVVPKRLDNYVVEFPKQSSMLRTP
FT                 PNHPHGGENVPAQQGTAPENKSVVSGVSKSAKSQLRSKGSRTSRSSNTDSQ
FT                 LKLLDLEEQNEEAELQASIERDRIVAEKQLAELQIQHDLALKTEQRKTEFL
FT                 KRQRERELKKFELQSGSSRGSTTTSRSSACTSTSKRVVDWLADTKKVRPTS
FT                 MLVESSPWMDRQFSRDPDTPAPNVWYPSAPSKRNPSAPTMKNATAGRGNNR
FT                 SPTGGEPNMAAIGARNASVLEPAVNEVLSQAFRALQSRNMRDLPPFSGDVM
FT                 EWTVFENEFRTSTEEFQLSDRDNLRRLNKALRGKARKTVESLLSSPENVEQ
FT                 ILRMLKSNFGRTEWVVANRLETLRNLDYVKEGNIESFRAFYNAVIGTKVAM
FT                 TNARANNYLMNPELISHLAEKLPAFSKQMWVRHKAALIKEGIAIEFDTFSR
FT                 WLEDEMDNQLASLNPVFSVKKPSYQQKQKPMVLNVNRRDDEATKKCPLCSA
FT                 SSHSGLEKCEQFRKLSVGQRRSAANSCKVCYICLKSDHARKNCKADRKCSI
FT                 CNKNHHELVHSEEPTRNSGFNRPDVQNNRENVCNVNGRNMNTLLRVGKVRI
FT                 HGPRGVEEVFALFDEGSSLSMMDAAVAESVGLRGPIAPVSYRWTNGILHKE
FT                 EQSMMLSFRISGPSEQAKLYEVSNIQTVENIALPAVKFDMAKVRQLYPMLD
FT                 ENKLAAIQDACPCMLIGSNNAGLIVPPKTVQYSLDGLQLTRCHLGWTIHGV
FT                 VDPTIVGSSNHHAFLCSDNDDSELTDLVKQMYKVEDFGIXGQSVKIADEDQ
FT                 RALDIMHRSIRRRGERFEVGQIYKYNNFVFPDSKPQALRRLQIIEKKMDSN
FT                 PEFADRYCAKIQDYVDKGYARQLELEELAETPNTWYLPHFSVATDEKFRLV
FT                 MDAKAKSHGFSLNDLLLKGPDFVPPLIAILIRARMKKIAFVADIREMFHQV
FT                 LIRREDQDSQRFLWRGMNRTDPPNVYVMQVMIFGAVSSPSMAQFIKNFNAK
FT                 ELDEKYPGVERAVVKQHYVDDYFDCADTEEAAIELVQRVIEVHDKGGFKLV
FT                 KFSSNSKAVLDSLDAEIVAEMQSDVRVLGIRWDLQSDEFVFPLNFPKLDQR
FT                 FRSGEAVPTKRELLKFMMGIFDPLCLLSPITIQLKLIFQELWRLQSGWDDE
FT                 IPDGLVPRWMEWLNETARLGEIRLPRYYYPAIXSFGDVELHAFCDASDKAY
FT                 ACVVYMVHRRKGKSHVALVYAKSRVAPLKSQTVPRLELQGCVLASQMISVL
FT                 QXEMMVDITKVYLWTDSKICLGWLSSNQKLTAYVGARVMKIKENGHGVDLW
FT                 HWIPSQLNVADLATKFSKFGDMQEWLRGPDFLYRDNAHWPVDEPLQMSSAE
FT                 LANFHSELECKDIPMADPLCCAAFEEKMLDLPDIARFSDFNRLIRSTAYYL
FT                 KMRKLLVLPRHEKPKRLTITVRDMEDARRAWYEKVQSEAFGDELCSLKKSG
FT                 YVKSGSRLKTYSPFLHNGIIRMRGRIQDNSKSFEVNNPVILPDNHPFSTLL
FT                 IRVYHIANAHQGTETVINSIKERHRILKIRSQVKKYAMSCVKCKELRAKPT
FT                 VPQMGMLPPERTTPFVYPFTCTGIDYFGPLSVKVGRRVEKRWVVLFTCMTS
FT                 RAVHLEVVPSLDTNSCIMAIRCFMSVRGPPQCIMTDNGTNFTGADQEIKTL
FT                 VKTLDQPQIEESLSVRGVEWKFIPPGAPHFGGCWERLVRSVKTALRAMLHD
FT                 RHPTDLVLRTALCEAMNTVNNRPLTHVADDPLDPEPLTPNMLLLGRNNVIQ
FT                 FDHDFDERDLDYRAAYKHSEIYGDRFWRRWVAAYRPELIRSRKWPDNRMYH
FT                 EFKVGDLVMLVDETLHRGNWPKGVVERVYRGPDDKIRTVDVRTSKSTYKRP
FT                 VSKIVLLNPISSKSGPE"
FT   CDS           join(33..2402,2406..3605)
FT                 /product="BEL-258_AA-I_1p"
FT                 /translation="MEPQVRRSGRTNKGVVPKRLDNYVVEFPKQSSMLRTP
FT                 PNHPHGGENVPAQQGTAPENKSVVSGVSKSAKSQLRSKGSRTSRSSNTDSQ
FT                 LKLLDLEEQNEEAELQASIERDRIVAEKQLAELQIQHDLALKTEQRKTEFL
FT                 KRQRERELKKFELQSGSSRGSTTTSRSSACTSTSKRVVDWLADTKKVRPTS
FT                 MLVESSPWMDRQFSRDPDTPAPNVWYPSAPSKRNPSAPTMKNATAGRGNNR
FT                 SPTGGEPNMAAIGARNASVLEPAVNEVLSQAFRALQSRNMRDLPPFSGDVM
FT                 EWTVFENEFRTSTEEFQLSDRDNLRRLNKALRGKARKTVESLLSSPENVEQ
FT                 ILRMLKSNFGRTEWVVANRLETLRNLDYVKEGNIESFRAFYNAVIGTKVAM
FT                 TNARANNYLMNPELISHLAEKLPAFSKQMWVRHKAALIKEGIAIEFDTFSR
FT                 WLEDEMDNQLASLNPVFSVKKPSYQQKQKPMVLNVNRRDDEATKKCPLCSA
FT                 SSHSGLEKCEQFRKLSVGQRRSAANSCKVCYICLKSDHARKNCKADRKCSI
FT                 CNKNHHELVHSEEPTRNSGFNRPDVQNNRENVCNVNGRNMNTLLRVGKVRI
FT                 HGPRGVEEVFALFDEGSSLSMMDAAVAESVGLRGPIAPVSYRWTNGILHKE
FT                 EQSMMLSFRISGPSEQAKLYEVSNIQTVENIALPAVKFDMAKVRQLYPMLD
FT                 ENKLAAIQDACPCMLIGSNNAGLIVPPKTVQYSLDGLQLTRCHLGWTIHGV
FT                 VDPTIVGSSNHHAFLCSDNDDSELTDLVKQMYKVEDFGIGQSVKIADEDQR
FT                 ALDIMHRSIRRRGERFEVGQIYKYNNFVFPDSKPQALRRLQIIEKKMDSNP
FT                 EFADRYCAKIQDYVDKGYARQLELEELAETPNTWYLPHFSVATDEKFRLVM
FT                 DAKAKSHGFSLNDLLLKGPDFVPPLIAILIRARMKKIAFVADIREMFHQVL
FT                 IRREDQDSQRFLWRGMNRTDPPNVYVMQVMIFGAVSSPSMAQFIKNFNAKE
FT                 LDEKYPGVERAVVKQHYVDDYFDCADTEEAAIELVQRVIEVHDKGGFKLVK
FT                 FSSNSKAVLDSLDAEIVAEMQSDVRVLGIRWDLQSDEFVFPLNFPKLDQRF
FT                 RSGEAVPTKRELLKFMMGIFDPLCLLSPITIQLKLIFQELWRLQSGWDDEI
FT                 PDGLVPRWMEWLNETARLGEIRLPRYYYPAI"
FT   CDS           3825..5771
FT                 /product="BEL-258_AA-I_3p"
FT                 /translation="MMVDITKVYLWTDSKICLGWLSSNQKLTAYVGARVMK
FT                 IKENGHGVDLWHWIPSQLNVADLATKFSKFGDMQEWLRGPDFLYRDNAHWP
FT                 VDEPLQMSSAELANFHSELECKDIPMADPLCCAAFEEKMLDLPDIARFSDF
FT                 NRLIRSTAYYLKMRKLLVLPRHEKPKRLTITVRDMEDARRAWYEKVQSEAF
FT                 GDELCSLKKSGYVKSGSRLKTYSPFLHNGIIRMRGRIQDNSKSFEVNNPVI
FT                 LPDNHPFSTLLIRVYHIANAHQGTETVINSIKERHRILKIRSQVKKYAMSC
FT                 VKCKELRAKPTVPQMGMLPPERTTPFVYPFTCTGIDYFGPLSVKVGRRVEK
FT                 RWVVLFTCMTSRAVHLEVVPSLDTNSCIMAIRCFMSVRGPPQCIMTDNGTN
FT                 FTGADQEIKTLVKTLDQPQIEESLSVRGVEWKFIPPGAPHFGGCWERLVRS
FT                 VKTALRAMLHDRHPTDLVLRTALCEAMNTVNNRPLTHVADDPLDPEPLTPN
FT                 MLLLGRNNVIQFDHDFDERDLDYRAAYKHSEIYGDRFWRRWVAAYRPELIR
FT                 SRKWPDNRMYHEFKVGDLVMLVDETLHRGNWPKGVVERVYRGPDDKIRTVD
FT                 VRTSKSTYKRPVSKIVLLNPISSKSGPENVANIMSNANIFTRVPQAPDAEL
FT                 "
XX
SQ   Sequence 5704 BP; 1522 A; 1323 C; 1549 G; 1305 T; 5 other;
     tttggtcctt cgaatgccta cgaacggtct atatggaacc acaggtacgt cgctctggaa        60
     gaacgaataa aggtgtagtt cctaagcgtt tagataatta cgtagtagaa tttccgaagc       120
     aaagtagtat gcttcgtact ccacccaacc atccccacgg gggggaaaac gttcctgctc       180
     agcaaggtac ggcgccggaa aacaaatctg tcgtttccgg tgtatcgaaa tctgccaaat       240
     cccaattgcg atctaaagga tcgcggacct cacggagcag caacactgac agccaactta       300
     agcttctgga tctggaggag cagaacgagg aggctgaatt gcaagcgtcc atcgaacgcg       360
     acaggatcgt tgctgagaag caattggccg agctgcaaat ccaacatgac ctggcactga       420
     agaccgagca gaggaaaacg gaattcctga agcggcaacg agagcgtgag ttgaagaagt       480
     ttgagctgca gtccggttca agtcgtgggt ctactactac gagcagatca agtgcgtgta       540
     ccagtacgtc gaaacgcgtt gtagattggc ttgccgatac gaaaaaggta agaccaacta       600
     gcatgttagt tgaatcgtcg ccctggatgg atcgtcaatt ttcgcgagat ccagacacgc       660
     cggcgcccaa tgtgtggtat ccatctgcac ccagcaagcg caacccatcg gcgcctacta       720
     tgaagaatgc aacggcagga cgtggaaaca atcggtcgcc aaccggcggc gagccaaata       780
     tggcagcgat cggtgcgagg aacgcgtcgg ttctcgaacc ggctgtgaac gaggttctgt       840
     cgcaagcgtt tagagcgttg caaagcagaa acatgaggga tctgccccct ttctccggcg       900
     acgtgatgga gtggacggtt ttcgaaaatg agttcagaac atccactgag gagtttcagt       960
     tgtcagatcg cgataatctg agacgactga acaaagcgct tcgtggaaag gcgcgaaaaa      1020
     ccgtggaatc gttgctttca tcccctgaga atgtggagca gattctgcga atgctgaagt      1080
     caaactttgg tcgaactgag tgggtggttg ccaaccgact ggagacactg agaaacctgg      1140
     attacgtgaa agagggaaac atcgagtcct tccgtgcctt ttacaatgcg gtaattggta      1200
     ccaaggtagc gatgaccaac gcgagggcca acaactatct tatgaatccc gaactcatct      1260
     ctcacctggc tgaaaaactt cctgctttca gcaaacagat gtgggttcgg cataaggccg      1320
     ctctgataaa ggaaggcatc gctattgagt tcgacacttt ctctcgttgg ttggaggatg      1380
     agatggacaa ccaacttgcg agtctaaatc ctgttttcag tgtcaagaaa cccagctatc      1440
     agcagaagca gaagccgatg gttctgaacg tcaaccgtcg cgacgacgaa gcaacgaaga      1500
     agtgtcccct gtgctcggca agttctcact ctggcctgga gaagtgcgag caattccgga      1560
     aattatcggt tggtcaacgt cgatccgcag caaactcttg caaggtttgt tacatctgtc      1620
     tgaagtcgga ccatgcacga aagaactgca aagctgatag aaagtgctcc atctgcaaca      1680
     agaatcatca cgaactggtc cattccgagg aaccaacaag gaattctgga ttcaaccgtc      1740
     cggacgtgca gaacaatcgc gagaacgtgt gcaacgtcaa cggtagaaac atgaacacgc      1800
     tgcttcgagt aggaaaggtg agaatccatg gtccacgagg agtcgaggaa gtttttgcgc      1860
     tgtttgatga aggttcgtcg ctgtcgatga tggatgctgc cgttgctgaa agcgtcggac      1920
     tgcgaggacc gatcgccccc gtgagctatc gttggacgaa tggtattcta cacaaggagg      1980
     agcagtcaat gatgctgtcg ttccgcattt ctggaccttc ggagcaagca aaactgtacg      2040
     aagtgagcaa catccaaaca gttgagaata tcgcactgcc agcggtaaaa ttcgatatgg      2100
     cgaaggtaag gcagctatat cctatgctgg atgagaacaa gctagcggcg attcaagatg      2160
     catgtccctg tatgctaatt ggatcgaata acgcgggtct gattgtgcct ccgaagacgg      2220
     tgcaatactc gcttgacggc ttgcagctga ctcgatgcca tctaggatgg acaatccacg      2280
     gagtagtcga cccgactatt gtaggatcga gcaaccatca cgcattcctg tgctccgaca      2340
     acgatgatag cgagcttact gatcttgtga agcagatgta caaggttgaa gacttcggga      2400
     ttnctggcca gtcggtgaaa atagccgacg aagatcaacg tgcattggac atcatgcacc      2460
     gttcgattag acgacgtggt gaacgttttg aagttggtca gatttacaaa tacaacaact      2520
     tcgtcttccc ggatagcaaa cctcaagcct tgaggcgtct ccaaatcatc gagaaaaaga      2580
     tggactccaa tcctgagttt gctgatcgtt actgcgcgaa gattcaggat tatgtcgata      2640
     agggatacgc taggcagtta gagctagagg agctagctga aacaccgaac acctggtacc      2700
     tgcctcactt cagcgtggcg accgatgaaa agtttcgatt ggtcatggac gccaaagcaa      2760
     agtcgcacgg gttttctctg aacgatttgc tactgaaggg tccggatttc gttcctccgt      2820
     tgattgcgat cctgatacgg gcccgaatga agaaaattgc cttcgtngcg gacataaggg      2880
     aaatgttcca tcaagtcctc attcgtagag aagatcaaga ttcccaacgt ttcttgtggc      2940
     gcggtatgaa ccgtacggat cctcccaacg tgtacgtgat gcaagtgatg atattcggtg      3000
     ctgtttcgtc tccgtcgatg gcacagttca taaaaaactt caatgcgaag gagctggacg      3060
     aaaaatatcc cggcgttgaa cgagctgtcg tcaagcagca ttacgtcgat gattatttcg      3120
     actgtgcaga taccgaggaa gccgccatcg aactggttca acgtgtgatc gaggtgcacg      3180
     ataaaggtgg attcaaactg gtgaagtttt cgtccaattc gaaagccgtg ttggattctc      3240
     tcgatgctga aattgtagcg gagatgcaga gtgatgtccg tgtgctcgga atccggtggg      3300
     acctgcagtc cgatgagttt gtatttccac ttaacttccc aaaactggac cagcgattcc      3360
     gatctggcga agcggtgcca acgaagcgag aactgttgaa gtttatgatg ggcatctttg      3420
     atccgctgtg tttgctcagt ccgatcacga ttcagctgaa actcatattt caagagctgt      3480
     ggcgtctaca gtctggatgg gacgacgaaa ttcctgacgg tctggtgcca cgatggatgg      3540
     aatggctgaa cgaaaccgca agactgggag aaattcgatt gccaaggtat tactacccag      3600
     cgatacnatc gtttggcgat gtcgaactgc acgctttctg tgacgcgagt gataaggctt      3660
     atgcctgcgt ggtctacatg gttcaccgtc ggaagggcaa atcacacgtt gccctagtgt      3720
     atgcgaaatc gagagtagcg cccctgaagt cgcagactgt tccgcgacta gagctacaag      3780
     gatgtgtcct ggcaagccag atgataagtg tgcttcaanc ggagatgatg gtggacatta      3840
     ccaaagtgta cctttggacc gattcgaaga tctgcctagg ctggctgagc tcgaaccaga      3900
     agctgacggc gtacgtcggt gctcgagtga tgaagattaa agagaatggt catggagttg      3960
     atttgtggca ctggattccg tcgcagctga acgttgctga cttggcaacg aagttttcaa      4020
     aatttggcga catgcaggaa tggttgcgag gtccagattt cctctatcgt gataatgctc      4080
     actggccggt tgatgaaccg ctacagatgt cctctgcgga gttagcgaat tttcatagcg      4140
     agctagagtg caaggatata cccatggccg atccgctgtg ttgcgcagcg ttcgaagaga      4200
     aaatgcttga tcttcctgac attgccagat tctctgactt caaccggctg atcagatcaa      4260
     ctgcgtacta tctgaaaatg agaaagctgt tagtattgcc gagacacgaa aaacctaagc      4320
     gactgacgat aaccgtacga gacatggaag atgctagaag agcttggtat gagaaagtac      4380
     agtcagaggc tttcggggat gaactgtgca gcctgaagaa gtcaggctac gtgaagagtg      4440
     gcagtcgcct aaaaacatat tcgccgtttc tccataacgg gatcatccgt atgcgaggtc      4500
     gcattcaaga caacagcaaa tcgttcgaag tgaacaatcc ggtgattctt ccggataacc      4560
     atccgttttc aacactgctg attcgtgtgt accacattgc caacgctcac caaggtacgg      4620
     aaaccgtcat caacagcatc aaagaacgcc atcgtatact gaaaattcgt tcgcaagtca      4680
     agaagtatgc gatgtcctgt gtgaagtgta aagagctgag agcaaaacct accgttcccc      4740
     agatgggaat gctaccgccg gagcgaacaa caccgttcgt gtatccattc acctgtaccg      4800
     gcatagacta tttcgggccg ctgtctgtga aggtcggccg tcgtgtggaa aaaagatggg      4860
     ttgtactgtt cacgtgtatg acgtcaagag cggtacatct ggaggtggtg ccatccctcg      4920
     atacaaacag ctgtataatg gcaatacgat gcttcatgtc cgtccgtggn ccgccgcagt      4980
     gcatcatgac cgacaacggc accaacttca ccggtgctga tcaagaaatc aagacgcttg      5040
     tgaagacatt ggaccagccg cagattgagg agtcactgag cgtcagaggt gtggaatgga      5100
     agttcatacc ccctggtgct ccccatttcg gaggatgctg ggagcgacta gtgcgttccg      5160
     ttaaaaccgc gctccgtgct atgttacacg atcgacatcc cacagacctg gtgcttcgga      5220
     cagctttgtg cgaggcaatg aacaccgtca acaatcgacc gttgacacac gttgctgatg      5280
     accctctgga tccggaacca ctgacgccga acatgctgtt gttaggacgg aacaacgtga      5340
     tccaattcga ccatgatttc gacgaacgag atctagatta tcgtgcggcc tacaagcatt      5400
     cggagattta tggggatcgt ttttggcgta ggtgggtagc agcttatcgt ccggagctga      5460
     tccggagtcg caaatggccc gacaacagga tgtaccatga gtttaaggtt ggtgacttgg      5520
     tgatgctggt agacgagact ttgcatcgtg gcaactggcc aaaaggcgta gtagagcgag      5580
     tttaccgggg ccctgacgac aagataagaa cagtggacgt ccgaacgtcg aagtcaacgt      5640
     acaagagacc ggtcagcaag attgtattgt tgaatcccat cagctcgaag tctggcccgg      5700
     agaa                                                                   5704
//
ID   BEL-258_AA-LTR repbase;    DNA;    INV; 888 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-258_AA_;
KW   BEL-258_AA-LTR; BEL-258_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-888
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2525-2525 (2012).
XX
RN   [3]
RP   1-888
RA   Bao W.;
RT   "Sequence updated with consensus.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus. 3'-end portion consist of tandem
CC   repeat and the length is variable.
XX
SQ   Sequence 888 BP; 211 A; 214 C; 219 G; 244 T; 0 other;
     tgttgcgaac attatgagca acgcaaatat ttttactcgg gtaccgcagg cacccgacgc        60
     cgaacttgtc gtcgcagcca cgtgagcagg ttgccgtggc aacggcgaac tcgcgatcgt       120
     agcaagcggg aaaaaattca aattgaaaat cagaagtgaa aaaaatattc gagaagaagg       180
     aagcattttt gtgtagcaag gaagcaattg taaaacgttt ttaaaatagt taataaaatt       240
     agttaaatag tcagtttaaa tgagttttta gttcatattt acgccaatta gttatccgag       300
     tggaattgag tggtttgttc cgtggaagtg tttcgcttga gtcacgtgtt tgaagtgctg       360
     catatcgtgg aacctggctg gagccaaaac tggtgctcct ctcccccaaa aagcagttac       420
     ttctgtccgt cttcaggtga gcctactgtc ggtcgattcc gaacgagcca cgctgtaaca       480
     tttggtcctt ctgtccgtct acaggtgagc ctactgtcgg tcgattccga acgagccacg       540
     ctgtaacatt tggtccttct gtccgtctac aggtgagcct actgtcggtc gattccgaac       600
     gagccacgct gtaacatttg gtccttctgt ccgtctacag gtgagcctac tgtcggtcga       660
     ttccgaacga gccacgctgt aacatttggt ccttctgtcc gtctacaggt gagcctactg       720
     tcggtcgatt ccgaacgagc cacgctgtaa catttggtcc ttctgtccgt ctacaggtga       780
     gcctactgtc ggtcgattcc gaacgagcca cgctgtaaca tttggtcctt ctgtccgtct       840
     acaggtgagc ctactgtcgg tcgattccga acgagccacg ctgtaaca                    888
//
ID   BEL-259_AA-I repbase;    DNA;    INV; 6084 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-259_AA_;
KW   BEL-259_AA-LTR; BEL-259_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6084
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2526-2526 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5135-5692] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..1206
FT                 /product="BEL-259_AA-I_1p"
FT                 /translation="MATASGDPTHTQQNCSGCSKPSFNDGPTIACHQCRRW
FT                 YHRACAGGVEEIADGSWSCIACILATSAPAKSIISTSSTRSARIRLEMMRL
FT                 EEIQKANEKHMLERQELERLREERTQKEKEDLTKKFIDKKYALLMSEALED
FT                 GASSVRSRGSRQRSLDKVKHWMEVENREISGIDTTLGDLIISPPPPQTNGN
FT                 QRIALSGTPLTLLGTKVATDSDLRQTTETVPGNCLPLPQSSTRSLLPSAPI
FT                 HSVTSTPHLITKEPQVPSNSLGMITSRFPTTSNASRSLVPESAIFQATASG
FT                 KMMTTATATQPTQASFSVKPPPIGAYFATRTCRWVPSSATISSTGRSSSVT
FT                 RTISAATAITKSAKFQRSHRAVSRSVSAADGSETGGPKGAPDFYWKP"
FT   CDS           1154..3976
FT                 /product="BEL-259_AA-I_2p"
FT                 /translation="MAARQVVPRELPIFTGNPEDWPIFISSYRNSTMMCGY
FT                 TDAENLMRLQKCLRGNALDVVRSNLLLPSSVPQVMATLETLFGNPERLIQS
FT                 LLTRVRNTAAPNADKLETLINFGVVVQNLVGHLKAANQHAHLTNPSLLHDL
FT                 VDKLPANIRLDWALYKKRVVAADLETFSNYMSAIISAASDVTHFSDFEMSQ
FT                 PVFRNEKQKSKEKTFLNAHSSFDDYRRQKGDDSNIKTVAAVKPCFVCEKVG
FT                 HRVKECYTFKSLSLNDRWKTVKMHQLCEKCLVPHGKWPCRSLKSCDISGCT
FT                 EHHHSLLHPGVPQSSEVAVVSLHRQPAKNPTIFRIIPVVLYGKATHIETFA
FT                 FLDEGSDVTLLDEEIADLLGLEGEQKGLCLKWTSNVTRDEANSRQINMEIT
FT                 GAGGGRRFPLVNVRTVGRLELPLQTLDYVQLAKQFPHLQNLPIRSYKNASP
FT                 RLLIGLSNLQLAIPLKRREGRGNEPMATKTRLGWTIFGNMAESNVSHSFHI
FT                 CECTPDERLHNLVKEFFAVENLGITSGPLPEGVEDARAKAILQETTRKGDD
FT                 GHYETGLLWRYDQFEFPSSYAMAAKRFYCLERRLDAHPELRDNLDKQIAEY
FT                 QSKGYAHKASKQELEVADPKRAWYLPLGIVTNPKKPGKVRIIWDAAAKVNG
FT                 VSFNSMLLKGPDMLTSLPSVLFRFRERKFCVTADIREMYHQVNIRPADRSS
FT                 QRFLYRSKPSDVLETYIMDVATFGSTCSPCSAQHVKNVNAEEWKKVYPEAA
FT                 SAIVDNHYVDDYLDSRDTEEELANLAIDVRTVHSKAGFDLRNWRSNSMKVL
FT                 RRVGEEPAKTGKIIGEDKLNQTERVLGMAWLPTDDSFTFSVVLSDDLQRMV
FT                 FGSGTVTKRGVLKLLMTLFDPHGLISNFLIHGKIVIQDLWRSGVSWDEAIP
FT                 QEIYARWKRWINQLSCLENAKVPRCYFPSYDVEDLRT"
XX
SQ   Sequence 6084 BP; 1703 A; 1343 C; 1547 G; 1487 T; 4 other;
     aacttttaag agtttcncta aggtgcacgg caagccatgg caacagcatc aggagatcct        60
     acacacacgc agcaaaattg ttctggctgc agtaagccaa gtttcaacga tgggccaact       120
     attgcatgtc accaatgtcg taggtggtat catagagcct gtgcaggtgg agtagaggaa       180
     atcgcggatg gcagttggtc atgtatagcg tgcattctgg ccactagcgc gccggcgaaa       240
     tcaataatat caaccagtag tactcggtca gccagaatca gactggagat gatgcggttg       300
     gaagaaatcc agaaggctaa cgaaaaacat atgttggaac ggcaggaact cgaacggcta       360
     cgagaagagc gtactcagaa ggagaaagag gatctaacta agaaatttat cgacaagaag       420
     tatgccctac tgatgtcgga ggctttagag gatggagcca gtagtgtgag aagtcgagga       480
     agtcgacaga gaagcttgga caaggtcaaa cattggatgg aagtggaaaa ccgtgagatt       540
     tctggtatag atacgacgct aggagacttg ataataagtc ctccaccgcc ccagacaaat       600
     gggaatcaac gaatcgctct gagtgggact ccactcactt tactcggaac taaggttgcc       660
     acggatagcg atttgagaca gaccaccgaa acagttccag gtaattgttt accgttaccc       720
     caatcatcta caaggtcgct actaccatcc gctcctatcc attcggtgac ctctacacca       780
     cacttaatca ccaaggaacc tcaagtgccg agtaattcat tgggaatgat cacgtcaaga       840
     tttcctacaa cttcaaacgc gtcacgatcg ctagtaccag aatcagctat atttcaagca       900
     acggcctctg gcaaaatgat gactacggcg acagcaacac aaccgacaca agcttcgttt       960
     tcggtaaagc ccccccccat tggggcatac tttgccaccc gtacctgtcg atgggtaccc      1020
     tcatctgcaa caatttcatc aactggacgg agctcaagcg ttacacgcac catctctgca      1080
     gccaccgcca ttaccaaatc agccaagttt caacgaagcc accgggctgt ttccaggtca      1140
     gtatcagcag cagatggcag cgagacaggt ggtcccaagg gagctcccga tttttactgg      1200
     aaaccctgag gactggccca ttttcataag cagttaccgt aattcgacga tgatgtgtgg      1260
     ctataccgac gcagaaaatt tgatgcgtct tcagaaatgt ttgcgtggta atgcattgga      1320
     tgtagtacga agcaatctgc tgcttccatc atcagttccg caagttatgg ccaccttaga      1380
     gacgcttttc ggcaaccctg aacggctcat tcaatccttg ttaactagag tgcggaatac      1440
     ggctgcgcca aatgctgaca aactggagac gttgatcaat tttggtgttg ttgttcaaaa      1500
     tctggtggga catttgaagg cagctaatca acacgctcac cttacgaatc catcgttgct      1560
     gcacgattta gtagacaagc tacctgcaaa tattcggctg gactgggcac tctataagaa      1620
     gcgcgtagta gctgctgatt tggaaacgtt cagcaactac atgtcagcga tcatctcagc      1680
     agccagcgat gtcacacact ttagtgactt cgagatgtcg caacccgtct ttcgaaacga      1740
     aaaacagaag tcaaaggaga agacgttttt gaatgctcat agctcatttg atgattatag      1800
     gcgacaaaag ggcgacgata gcaacatcaa aactgtggct gccgtaaagc catgcttcgt      1860
     ttgcgaaaaa gtaggacaca gagtcaaaga gtgttacacg ttcaaatccc tctctttgaa      1920
     cgatcgctgg aaaaccgtaa aaatgcatca attgtgtgag aagtgcctag tgccgcatgg      1980
     aaagtggccg tgtaggtcat tgaagtcatg tgatatcagt gggtgtacag aacatcatca      2040
     ttcgcttcta catcctggtg ttcctcaatc atctgaagtc gccgtagtat ccctacaccg      2100
     acagccggcg aagaatccta ctattttcag gatcatccct gttgtattgt acgggaaagc      2160
     aacacatatc gaaacgttcg cctttttaga cgaaggatct gacgtaaccc tcttggatga      2220
     agagatcgcg gacttgctgg gccttgaagg tgagcaaaag ggcctctgtc tgaagtggac      2280
     atcaaatgta actagggatg aagcgaactc cagacagata aatatggaga taacgggtgc      2340
     cgggggaggt aggcgctttc ctctagtgaa cgtgcgcaca gtcggtcgat tggaattacc      2400
     tcttcaaact ttagactacg ttcagttggc aaaacaattt cctcatcttc agaatttgcc      2460
     tatccgaagt tacaaaaatg caagtccaag actgttgatc ggcttaagca acttgcaatt      2520
     agctatccca ttaaaacgcc gagaaggccg cggcaatgaa cctatggcga ccaaaacgag      2580
     attaggttgg acgatttttg gtaacatggc cgaatcgaac gtgtctcatt cgttccacat      2640
     ttgtgagtgc acacctgatg agagattaca caacctggtc aaggagtttt tcgcagtgga      2700
     aaacttagga attacaagtg gacctctacc agaaggcgtt gaagatgctc gggccaaggc      2760
     tatcctgcaa gaaacgacca gaaaaggcga cgatgggcat tacgaaacgg gattgctttg      2820
     gcgatacgac cagtttgaat ttccatcaag ttatgcgatg gccgctaaga ggttttactg      2880
     tttggagcgt cgcttggatg ctcatcccga acttcgtgac aacctggaca agcaaatcgc      2940
     cgagtaccaa tcgaaaggat acgctcataa ggctagtaag caggagttgg aagttgctga      3000
     tccaaagcga gcatggtatt taccattggg tattgtgaca aatccaaaga aacccggaaa      3060
     agtccggata atttgggatg cggccgcaaa agtcaacgga gtatcgttca attcgatgct      3120
     cttgaagggg ccggatatgt taacatcgtt accatcagtt ctttttcgat tccgtgaacg      3180
     caagttttgt gtaaccgccg acattagaga gatgtaccat caggttaaca tccgtccagc      3240
     tgaccgttca tctcaacgtt tcttatatcg gtcgaaacca tcagatgtac ttgagaccta      3300
     cataatggac gttgccacat tcggctctac ctgttctcca tgctcggcac aacatgttaa      3360
     gaacgtcaac gctgaagaat ggaaaaaggt ctaccctgaa gcagcgtccg cgatagtgga      3420
     caatcattac gtggatgatt atcttgatag ccgggacacg gaggaggagt tggctaactt      3480
     agcgattgac gttcgaacgg tgcactccaa agctggtttc gacctgagaa attggcgatc      3540
     taattcgatg aaagttttgc gacgggttgg ggaagaaccg gcgaagacgg gaaagataat      3600
     cggcgaagac aagttgaacc aaaccgaacg agtattagga atggcctggc tgccaactga      3660
     tgactcgttt acgttttccg tagttttgtc tgacgatttg cagcgaatgg tgttcggatc      3720
     aggaacagta accaaaagag gcgttctaaa gttgctgatg acattattcg atccccatgg      3780
     tttaatatca aatttcctta ttcatggtaa gattgtaatc caagatcttt ggcgcagtgg      3840
     agtgagctgg gatgaagcta ttccacaaga gatctatgct cgttggaaac gatggatcaa      3900
     tcaactttcc tgtctggaga acgcgaaggt tccgcgatgt tattttccgt cctacgacgt      3960
     ggaggatctg cgaacgnttg ttacgaagcg tagcatatat ttgttgatgc aagcgagtca      4020
     gcatatgcat gtgtcgctta tttccgtata attgagcgag gtgagcctcg ctgcgcattt      4080
     gtgtcctcca aagccaaagt agctccatta aaatcgttgt cgattccgcg cttggagctg      4140
     caagctggag ttataggcag tcgactggct aagtcaataa gggataacca tacacttcca      4200
     atcagtcgca ccgttttcca cagcgactct actacgttac tctcttggat cagatcggac      4260
     actaggaagt accgacaata cgtggcagtg cgtgtaggag agatactgga attgagcaat      4320
     gtttcggatt ggcgctgggt accgactaaa ctgaacgtag ctgacgaagc gacgaaatgg      4380
     agcaacaggc cggtcgtgga gccgaacagt aggtggttta gaggacctga gtttttgtat      4440
     ttgccggaag agtgctggcc tcagcagatt gcagtaccaa caagtactac catggaaacg      4500
     cgatcgattc acgttcgtca ggaaaacttc cactgctcgg ttatcgatgt ttttcggttc      4560
     tacaacgtgg agaatctggg aacgcttgtt acgaagtgta gcatatattt tctacttttc      4620
     cgattgttgc cgtgctgtga aggaagacag aaacggttta ctggatcgaa cgcattttga      4680
     acgagcagaa cgtgctcnct ggcgactggc gcagaaggat gagtacgctg aagaattggt      4740
     ggaattgacg agaaagtcaa atgagacaac ccgaaggcag ttgcgttttg aaaagtctag      4800
     cactatacgt aagctatcac cattccttga tgaattcggg gtaataagaa tggaaggacg      4860
     cattgaagca tcaccgtttg cgaccttcga tgcgaaattc ccgattattc tccctaaagg      4920
     acatcgtgta accgaactct tactcgatag ctatcaccga cgatttggac atggttttgg      4980
     agaaactgtt gtaaacgaaa ttcgacaaaa atttcacgta tccaatttgc gagtattggt      5040
     acggggccta tcgaagcgat gtacatattg tctagtacac aaggcagaac cgaaggtacc      5100
     aagaatggct cctcttcctg cggtacgggt tactcctttn gaacgaccat tctccagagt      5160
     aggcgtcgat tactgcggtc ctttcaccat caaagttctt cgaagcaacg tgaaacggtg      5220
     ggtggcgttg ttcacgtgtt tggcaacgcg agccgtgcac ttggaagtgg ttacttcgtt      5280
     atctacggag tcatgtaagc tagctttccg gcgattcatc gaccgcaggg gtgctcggtc      5340
     cgaaatatat acggataatg ggactaattt ccaaggaacg tgccgggaat tggctaagca      5400
     actcgcaagt gttaaccaag gattggcaga aacgtttacc gatgcaaatt ctaaatggtt      5460
     ttttattcca ccagcctctc cacacatggg aggagtgtgg gagcgcatgg tgcgttcgat      5520
     taaggctgcg atgaatggta tacatcatct gcgaccgccg actgaggaag tctttcagac      5580
     tttgtgtacc gaagctgagt cgatggtgaa ttgcagaccc ttgacgtacg taccattaga      5640
     cacttcagat caggaagccc taactcccaa tcacttcctg ctgttaagtt catcgggagt      5700
     gaaacaaacg gtaaaacaac cgacagacga aggaacagga ctgcgaagta actgggatca      5760
     atgccaactc ttgcttgacc gcttttggac taggtggatt cgtgaatacc tgcctaccat      5820
     cacgcgtagg acaaaatggt tcgatgatgt tcaaccgttg acagaaggtt cgctggtact      5880
     cattgtgaat gataaggagc gaaatagttg ggttcgaggc aaagtagtga agctgattcc      5940
     aggagcagat gggcggatca ggcaagctga tgtgcagatc gctggaggtg gaatactgcg      6000
     acgagcagta gcaaaactgg ccgtgttaga tgtgttggaa gctggtaaac ctgccagaac      6060
     tgggcagctt tacgggttgg ggga                                             6084
//
ID   BEL-259_AA-LTR repbase;    DNA;    INV; 659 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-259_AA_;
KW   BEL-259_AA-I; BEL-259_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-659
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2527-2527 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 659 BP; 250 A; 88 C; 132 G; 189 T; 0 other;
     tgttggtact ggcagcacgg acaaccaagt ggatgtatgt gcggagaacg acgttgatag        60
     agattactct tagacaacag atacgtccgt aggtagagca gccaataaag tgaaagggaa       120
     cgtcagatag gatgatttgt aaaatttact gaaggtagaa gattgtttat cgattaagat       180
     cgtagtgctt tacagtgtgg atttagattt ggagtaaatt agaatcgatt ttggatacag       240
     ggttaaaagt aaggtcacat gcaagttaaa aggctctaaa atctatataa aatctaattt       300
     aaacttatag ctaatagtac ggacaagaaa cagaattagt acggatgaaa tcagttattt       360
     aacctcaaat tggagtagat atacgtgagt tacataatat taaatcttaa tttagaatta       420
     acaattttga atttaacaga aactagattg tgttgaaatc gcatttgaat tagtggaagt       480
     cgagaaggga cgaaatacga aaagtcaacg aaactgtaag tctaatttaa tgtaaaacct       540
     aatgaactag aactaaacaa tttcaatttt caataatttc tagcttaaaa gcaacatata       600
     cacaaataaa attgttcgct gaagagacat tgactagttt tccttccccg acggccaca        659
//
ID   BEL-25_AA-I repbase;    DNA;    INV; 7241 BP.
XX
AC   supercont1.26;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AA_;
KW   BEL-25_AA-LTR; BEL-25_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7241
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.26; Positions  817250  824490.
XX
CC   'GTGGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           902..6010
FT                 /product="BEL-25_AA-I_1p"
FT                 /translation="MLEATCKEFYTVREQIELILETTSAKTTDDEDAVLEL
FT                 NEKNELVLSEFEDRYCVAKASLLSMQPSPPLPSVSTAAGVGPLGHRSDSSF
FT                 PKVKLPEIRLPSFNGKIKEWITFRDSFRSLFHDNMQLTDMDRFSYLKSTLS
FT                 GEALQEIDSIELSSANYSVAWKALETRYENKKLIVKAHLDSLFAVDSMKRE
FT                 SYEGLSNLIGGFEKNLQMLQKIGEQTDAWSTILAYMVYSRLDPATLRQWET
FT                 HHNSKNVPTYQNIITFLRSYCSVLQSIAPTKSPTCPDQHSSRPSICHTVVK
FT                 TSNKCPFCNGSWHSAFLCGNFQRLLVPERNEAVFKAKLCRNCLNPGHFARN
FT                 CEKGACHHCQQKHHSLLHAGPSRSSVPQSQSSPPEQNQQQPQTPNQQTHNA
FT                 SSATPSTSQGQSTSSQATNTSTATSQTHVALPITPTQNILLSTALVKVRDR
FT                 NGNSMLARALLDSCSQHCLMTKEFSSRLKFNETPSYLSVQGIGTSSSTSTS
FT                 LISAVVSPRLDRISSFVQEMQFYVLPRLTVSLPTAACDPSSWNTLDSSMLA
FT                 DPRFYEPGPVDVIIGAEFYMDLLKNEQQKATEAGPTLQNTELGWIVSGKVP
FT                 DSTRSIPQSLTFVCSTSELQDQLAKFWELETCRSPSTYSLEESACEKHFNR
FT                 TTVQDASGRYIVTLPKREAMISRLGHSESTAIKRLIGMERRFAVNPALKEM
FT                 YVEFIREYLELGHMREVTREAESGVSRYYLPHHAVLKPDSTTTRLRVVFDA
FT                 SCQTSTGVSLNDALMVGPVIQDDLTSISLRFRTHRIAINADVAKMYRMIGV
FT                 QEQDYPLQSIKWRYETSEPIRTYELTTVTYGTSSAPYLATRCLQRLADDGK
FT                 ATHPIASKVIRKDFYVDDMLTGADTVEEGRRLVRDVIELSKSAGFTLRKWN
FT                 SNSKELLEVIPDELRDVRSVLEIDSSDTAVKTLGLVWEPDHDVFRFTFPSF
FT                 NWPATITKRVIVSDVSRLFDPLGLVGPVIIQAKIFIQELWKQGCGWDEPLD
FT                 IKLQDKWQEYRRNLQGMESLTVPRWVGTGTQIVSTEIHGFCDASNKAYGAC
FT                 IYIRTISETGEVNVRLLTAKSRVAPLDSLKKGNKRLSTPRLELSSALLLAH
FT                 LFEKVTNSLEIEANCFFWTDSTIVKCWLASSPSRWKQFVANRVSEIQHITK
FT                 HDKWNHVMSLDNPADIISRGMNPLQLPYESLWFNGPVWLMSDEQHWPSTPD
FT                 ISEDDFDPTELEVKSVSAVLPANSPSEIFCLKSTYIDLLRLTAWVRRFRHN
FT                 LNPANRYDRRYGQLTTIELEEALNTLVRLSQHESFPQEIADLSSGKEVQES
FT                 SKISNLHPELTSGILCVGGRLRHASIATNRKHPYILDHRHPFSYIVVAHYH
FT                 QKLLHGGQQLMISCIRERFWPTSIRNIVRKRVGVDYCGPFNVAYPYRRNRP
FT                 VKIFVAVYVCLVTKAIHLELASDLSAQGFIATLKRFASRRGKPEILMCDNG
FT                 RNFVGARRKLEELRRLFNNQQFQQSVISSAAEDQIQFRFIPARSPNFGGLW
FT                 ESAVKSFKLLFKRTVGSHILLYDEMQTILTQVEAVLNSRPLTPLSSDPDDY
FT                 EALTPGHFLIQRPLTAIPEPDLDGIPENRLAAYQKSQRFTQQLWKKWSELY
FT                 LSDLHNRTKWTVRRKNIVEGAMVVLKEENQPPLTWQLGRVTEVHAGRDGNV
FT                 RVVTVKTKDGSYRRAISKICVLPIRDNIDHHNEE"
XX
SQ   Sequence 7241 BP; 2028 A; 1710 C; 1687 G; 1816 T; 0 other;
     ttttggtcct tcgaaccgga tcagtttcgg tatcggacac ttttgggcaa ttttagactg        60
     ttgttgattg gtgctcaaca tctaacgaac tatcagtgcg cgaaagccgt cggcaaattg       120
     attgcacggc tcggaagttt tgttggtgaa aattcctccg cgagctacga attcctccga       180
     aaggcgtatc cggcgtgtaa agggtctggc aagacggcaa gttaaggctt ccagcgccat       240
     cgtcaattgg attggcgcga tttttccttt gctggccatt ataaagccaa tacgtcgcca       300
     ttgtgaacat tatcacggat aaggaccatc gagttagcgg acattttgag cgaccagcca       360
     ttggacgttt cgaagcatac gacatcaggg aatcagcctt ggattggact tcttggagct       420
     tgaaagggaa gtagtacatg ctgtagtgtg accaattgct tgtggcctaa tatatttatt       480
     gaaagtgcat gcgagtgttg tcctattttt atgctgctta gccctttgag tcctccgcta       540
     gcttaagttg gtcttggaat tttggtagat ttgttcggct tggtttttct ttggattgct       600
     tctcccctcg ctgctgtcac tccgtttagc agtcaatctg tctcgtgagg tcgcgacctg       660
     tggaacgtcg agtcgatcgg gagtgatagt gcaaagtgct gcagtgtagt gattgtatta       720
     ttgattaatt acgtcaaccg tagttagtcg cagagcagtg cacagtggtt caaaagtgtc       780
     ggacctgaga gaactaacga aacgtgaacg gcgtttattg ggaacgctgt taggtgtaga       840
     gaagttcgtg agcaattatg agcatgcccg tgacgaaaag caaatcggtg tccgtttgca       900
     aatgctagag gcaacatgca aagagtttta tacggtacgt gaacaaattg agctgatatt       960
     agaaacaact agtgccaaaa cgactgatga cgaagacgca gtactagaat tgaacgagaa      1020
     gaatgaactt gtgctgagcg aattcgaaga tcgatattgt gtagcaaagg caagtttgtt      1080
     gtcaatgcaa ccctcacccc cacttccatc cgtttcgact gctgccggag ttggtccact      1140
     tggccaccgc tccgattcct ccttcccgaa ggtgaaacta cctgaaattc gcctgccgtc      1200
     gttcaatggg aagattaaag agtggatcac ctttcgtgac agttttcgca gcctgtttca      1260
     cgataatatg cagctaacag atatggaccg attcagctat ttgaagtcta cgctttcagg      1320
     agaggccttg caagaaatcg attcgataga gctttcgtcg gcaaactaca gcgtagcatg      1380
     gaaggcttta gaaacccgct acgaaaacaa gaagttaatc gtaaaagcac acctggattc      1440
     cctctttgcg gtggacagca tgaagcgaga aagttacgaa gggctgagta atttaatcgg      1500
     gggattcgag aaaaatcttc aaatgcttca aaagatcggt gagcaaacag acgcctggag      1560
     cacaattttg gcgtacatgg tgtactctcg actagatcct gccactttgc ggcagtggga      1620
     aacgcatcac aattccaaaa atgttccaac gtatcagaat atcatcacct ttctacgaag      1680
     ttattgctca gttcttcagt caattgctcc aacgaagtct cctacctgtc cagaccagca      1740
     ttcgtcaagg ccgtccatct gtcacaccgt cgtcaaaaca tccaataaat gtcccttctg      1800
     caatggatcg tggcattctg cgtttttgtg cggcaatttt caacgtctgc tggttccaga      1860
     gcgtaacgag gctgtgttca aggctaaatt atgccggaat tgcctaaacc ctggtcactt      1920
     tgcacgcaat tgtgagaaag gtgcctgtca tcactgtcag caaaagcatc actccctgct      1980
     acatgctgga ccatcaagat cctccgttcc acagtcgcag tcaagtcctc ctgaacaaaa      2040
     ccaacaacag ccacaaactc cgaaccaaca gacccacaat gctagttcag ctacaccaag      2100
     cacctcgcaa ggacaaagca cttcgtcaca agccacaaac acaagcacag ccacaagtca      2160
     gacacacgta gcactcccaa tcacacccac acagaacatt ctcctttcaa cggccttagt      2220
     caaggtcagg gatcgcaacg gcaattccat gcttgcgcga gcgctactgg attcgtgctc      2280
     tcagcattgt ctgatgacaa aagagttttc cagtagactt aagttcaacg aaacaccgtc      2340
     gtacctgtcc gtccaaggaa ttggaacttc ttcaagcact tcaacaagcc ttatcagtgc      2400
     agtagtcagt ccgaggttgg accgcatttc atcatttgtt caagagatgc agttctacgt      2460
     cctcccacgt ttgaccgtgt cattaccgac agctgcctgc gatcccagca gttggaatac      2520
     cctggattca tcgatgctag ctgatccacg cttctacgaa ccaggtccag tggatgtcat      2580
     catcggtgca gagttctaca tggatctctt aaaaaacgag cagcaaaagg ctactgaggc      2640
     cggccccacg ttacagaata ctgaactggg atggatcgtc tccggaaagg ttccggacag      2700
     cactcgtagt ataccacagt cacttacatt tgtctgttca acctccgaac ttcaagatca      2760
     gcttgcaaaa ttttgggagc tggaaacctg tcgaagtccg agtacgtatt cgcttgaaga      2820
     atcagcgtgt gaaaaacatt tcaataggac tacagtacaa gacgcgagtg gcagatacat      2880
     cgtgacgcta ccgaaaaggg aagcgatgat cagcaggcta ggtcattcag aatcaacagc      2940
     cataaagcgt ttaataggga tggaacgacg cttcgctgta aatcctgcat tgaaagagat      3000
     gtatgttgaa ttcattcgtg aatatcttga gcttggacac atgagggaag ttactaggga      3060
     agctgaatca ggagtcagtc ggtattatct gccacatcac gctgttctaa aaccggacag      3120
     cacaaccacg aggctacgag tagttttcga tgcttcttgt caaacatcga caggagtttc      3180
     gctaaatgat gccctcatgg tgggtccggt catacaggat gatctgacaa gcatatccct      3240
     tagattccgt acacatcgca tcgccattaa tgccgacgtc gccaagatgt atcgaatgat      3300
     tggggtacaa gaacaagatt atccattgca gagcatcaag tggagatacg aaacatctga      3360
     accaatccgt acttacgagt taacgaccgt aacgtacggt acctcgtccg cgccatattt      3420
     ggccacaagg tgtctgcaac gccttgctga tgatggaaaa gccacccatc caattgcatc      3480
     caaggtaatc agaaaagact tctacgtcga tgacatgctc accggcgctg ataccgttga      3540
     ggaaggtcga agattggtta gagatgtcat cgagttgtca aagtcagcgg gtttcacact      3600
     gagaaagtgg aattccaaca gcaaggagct ccttgaagtc attccagatg aattaagaga      3660
     tgtgcgatct gtgctagaga tagactcctc tgataccgcg gtcaaaactc ttgggctagt      3720
     gtgggagcct gaccatgatg tgttccgatt cacatttcca tccttcaatt ggccggcgac      3780
     aattacaaaa cgcgtgatag tctccgatgt gtcacgacta ttcgacccgc ttggcctagt      3840
     tggccctgtc atcattcagg ccaaaatctt cattcaggaa ctatggaagc aaggctgcgg      3900
     ttgggatgag cccttggata taaaattgca ggacaaatgg caagagtatc gtcgcaacct      3960
     acagggtatg gaaagcctta ctgttccccg gtgggtagga acaggtactc aaatcgtctc      4020
     caccgagata catggcttct gcgatgcgtc taacaaggct tatggagcct gtatttacat      4080
     ccgcacaatc tccgaaaccg gggaggtgaa tgtgaggctg ttaacagcaa agtcacgagt      4140
     tgcacccctc gacagtctga aaaaagggaa caagcggctg tctactccac gacttgaact      4200
     ttcgtcagca ttgttactag cacatctttt tgagaaggtt acgaacagtt tggaaattga      4260
     agcgaattgt ttcttctgga cggattctac aatagtaaag tgttggttag cctcgtcacc      4320
     gtcaagatgg aagcagtttg tagccaatcg agtttcggag atccagcata tcacgaagca      4380
     tgacaaatgg aatcacgtga tgagtctaga taatccagca gatataattt cccgcggaat      4440
     gaaccctttg caactgccgt atgaatcgct ctggttcaat ggcccggttt ggctaatgtc      4500
     ggatgaacag cactggcctt caactccaga tatttccgag gatgattttg atcctacgga      4560
     actcgaagtc aagagcgtct cggcagtgct tccagccaat tccccaagcg aaattttctg      4620
     tttaaaatcg acgtacatcg atcttctacg actaacggcc tgggtacgac ggtttcgtca      4680
     caatttgaat ccagcgaatc gatacgatcg tcgttatggt cagctgacta caatcgagtt      4740
     agaagaagcg cttaatacgt tggtacgtct ctcccaacac gaaagctttc cgcaggagat      4800
     agcggatcta tcgagtggaa aagaggtcca agagtcttca aagatctcga atctccatcc      4860
     ggaactcacg tcaggaatac tctgcgttgg tggccgactg cgtcacgctt ccatagcaac      4920
     aaacagaaaa catccctaca ttcttgatca tcgtcatcca ttctcgtaca tcgtagtcgc      4980
     acactatcat caaaagttgc tgcatggcgg acagcaactc atgatatcat gcatccgaga      5040
     acgcttctgg ccaaccagta tccggaatat tgtacggaag agagtaggcg ttgactactg      5100
     tggtccgttc aacgtcgcgt atccatatcg tagaaatcgt ccagtaaaaa tcttcgtcgc      5160
     cgtttacgtc tgtcttgtga ctaaggcgat ccatttggaa cttgcgtcag atctgtccgc      5220
     tcaaggattc attgctaccc tgaaacgatt tgcgtccagg cgtgggaagc cggaaattct      5280
     catgtgcgac aacgggcgaa attttgtcgg cgcgagacgt aaattggaag agttacggcg      5340
     tctgttcaac aatcaacaat tccagcaatc tgtcataagc agtgctgctg aagaccagat      5400
     ccaatttcgc tttattcctg cacgttcgcc aaactttggt ggactgtggg aatcggctgt      5460
     caagtcattc aagttgcttt tcaaaagaac ggttggctca cacatccttt tgtacgatga      5520
     aatgcaaaca atactaactc aggtggaagc agttctgaat tctcgaccct taacgccgct      5580
     cagtagcgat ccggacgatt acgaagcatt gaccccgggt cattttctta ttcagcgacc      5640
     cctcactgcc attcctgaac ctgatctaga cggaatcccc gaaaatcgtt tggcagctta      5700
     tcagaagtct cagcgattca cgcagcagtt gtggaaaaaa tggtcagaac tttacctctc      5760
     agaccttcac aacaggacaa agtggaccgt gagaagaaaa aacatcgtgg aaggggccat      5820
     ggtggtcctg aaggaagaaa atcaacctcc tctgacatgg caactggggc gcgtgactga      5880
     agttcacgct ggtcgggacg ggaatgtacg agtcgttaca gttaaaacaa aggatggtag      5940
     ctatcgtaga gcgatctcca agatctgcgt tctaccaatc cgagacaata ttgatcatca      6000
     taatgaggaa tgaggactcc tccatcagcg gaggtcgacg atttcgacct ccgcgcacca      6060
     gttaagttgt ttattgttaa tgttattcgt aaaaagtaat ccgctcatat ttcccccagc      6120
     tacgattcgc cctagttcca gtgttccagg aaatttctgg ctttgaggaa ctcaacctaa      6180
     gccagctaag cactctttag tcgaggtcgg tatgtctatg gtgatggtcg ttgattgcat      6240
     gtgaatttca atatgttcaa aatgtgaaca cattcagcgg tgttcaatgc cagcgcatcg      6300
     gcgctcgaat caataaaacc ttcatagaga tctacgtttg atcgttcgag gtgatctgca      6360
     tcagtatcag cgagaggaat aaaatcggaa ttcgtcttca gtgttctacc tatttgcgac      6420
     agcaaacaca accagtacgt ctaacgaaca caccaagtag cagcagcatc acaagatcat      6480
     gcgaagatcg cgacggtgaa tcttattcat gagagggtca tcggtgtcaa ccggcgctcg      6540
     cggaggcctt ggaggcctcc gcatcaggca agttactttt tattgtgatt aaaagggtaa      6600
     aaaagcaccc tctcatattt tgcagcaaga tgtcaagcaa cacaccacca ctgagagtca      6660
     ccgaaaccta ccagacagtc tgtatcgtta aagcaaaccg taattcgaat cgaacatcta      6720
     agtcccgtca gcatattgtc accgtgagcg tatcaaccca ccgtcaagtc aacgcagtgt      6780
     ttaactggaa agcaactaac gcatttaatt gacccatgat cgaccccagc tggagttcat      6840
     cgatgccatc cggcgtcagc ggaggccacg gaggcctccg tttcaggcaa gtcgttggtt      6900
     aatttgatta taaaggtaaa aaagcacctg ctcatctctt ctagcgatat gatctgcagc      6960
     gacatcaaca tcggaaatat gaaattgatc ctcatgacaa gtaaggcgta tcgaacgcct      7020
     atccaatcgt aaacaacgca acaaattttg acctaggaaa acagctacga aaccagcgaa      7080
     gaaactaaat cactggagca gcagcaatag aagtgatagt cgttttattt ttgtgcaagc      7140
     gaatcatacg agcaaaacaa aaataattaa atagaactcg atagtcagta agttagagta      7200
     ggatagcagt taaaattaat aatttcaagg cggccggcat a                          7241
//
ID   BEL-25_AA-LTR repbase;    DNA;    INV; 336 BP.
XX
AC   supercont1.26;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AA_;
KW   BEL-25_AA-I; BEL-25_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-336
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.26; Positions  816914  817249.
XX
SQ   Sequence 336 BP; 108 A; 67 C; 72 G; 89 T; 0 other;
     tgatagaaaa ggatagaaga aaatatcgat gcatagattt ttattagcat ccctattggc        60
     aacaaattct ctcgccggtt tgctcttctc cttatatacc cacagccggc aaacgatcgt       120
     attgcagcca gcagtgaaga atgtatatac atatagtagg aaactagcat agcagaagtt       180
     agttgtaaat aaaaccgtcg cggagtacac ttcgtttggt gatttctgac cgtagtaaaa       240
     tcagttcagt gttcgcgaat aaagaagtgt tcagttcatc aatacgcgag tttctgaagt       300
     caagtgtccg aaaaactacc cgcgacggcg cgaaca                                 336
//
ID   BEL-25_AG-I repbase;    DNA;    INV; 2729 BP.
XX
AC   .
XX
DT   18-FEB-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AG_;
KW   BEL-25_AG-LTR; BEL-25_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2729
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1446-1446 (2016).
XX
DR   [1] (Consensus)
XX
CC   'GTGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           438..2558
FT                 /product="BEL-25_AG-I_1p"
FT                 /translation="MPQDALRMRHTPLHTLTHNESPANTFLNQSQVTARNG
FT                 FPRDLPSFYGSVDEWPRFISTYNRTTISCNYTDGETLERLQHCLKGTALDI
FT                 VGHLLLFPEGVKAAINTLKARFGRPDLIVDRTVEKIKMMAAPKMERLDTVV
FT                 EFGFAVKRLIATVQASGLVDYIHDVMLLKELVKKLPPVLCMEWARLRKRLR
FT                 SVNLYQFGMWIGELADDLCAVIDMPEASTEQAERSAPPVRHNVQRHAPHRP
FT                 TAMQPHRTVPYVRTTPAYCNAVVLQEESSSGVPSSSSHPESSSCILCGGTC
FT                 VSLSACEKFLRTTVAARRAFINERKLCRRCLEYHNGRCNITTPCGVDGCSI
FT                 LHNSLLHQEGTHGNSGMSNETNNNYFNTHSGVNESVLLKYVPVTLYGPRGK
FT                 VETFAFIDDGSTSTFMDHGLMDELGLEGTPHPVQLHWTGDVTREERDSVQL
FT                 SVKISGRQGSATPYLLTDVHTVKELALPRQSVNTSQLAAKYQHLRGLQLPS
FT                 YADAAPRILIGIDNCILGRSLKCVEGKWGQPIVSKTRLGWVAYGPCPIATN
FT                 TPGVSLQAFHTRVRERSVDLVAVELNARSSPRIIDVKSAERRKVEIREPIR
FT                 VTAVPRIEMRFIENTVFGTSPRCTYLRKGRIVVLDGSPGCSRKHYTHLPIE
FT                 TAKEDGKQDKHRSADNNADLMNVVRLIEDSYTHRNLTRIGRIDSERSKRIT
FT                 KTPAEKN"
XX
SQ   Sequence 2729 BP; 765 A; 628 C; 737 G; 599 T; 0 other;
     ttccaaaaaa ttacttgttt aacagtttac aagctaattc gtcgcgagtc gtataaccga        60
     atcgataaag tatcgcgtaa gtgagttaca cccgcgtccg cgtagtgaaa acaataaaac       120
     ttagtgggaa gtttacgaag gttgagaacc gaacaatgga tcaagcacgg aatttgcatt       180
     acgatgtaca ggaggcttat tccactcctg tgacgagtca tgcgacaggg cacaacggcg       240
     ttcaaactcc aagagcgtcg tcaagctcgg ttccggaacg cgatgctgtg aaaaatattc       300
     cgctggaagc aggcacaagc cggtgcgcta cgggcggtaa cgcaataccg caaaggcagg       360
     agcgggacga gacagcgttg gatgcaagat gggtttgatg agctgggaat gtacgaccga       420
     gagggtaagc gcacactatg ccacaggacg ctcttcgtat gcgccacaca ccactgcaca       480
     cacttacaca caacgaatca ccagcgaaca catttcttaa ccaaagccaa gtaacagctc       540
     gaaacggttt cccacgggat ctgccgagtt tctacggatc cgtagatgag tggccacgat       600
     tcatatcgac atataatcga accactattt cctgcaacta cactgatggc gaaacccttg       660
     agaggctgca gcactgcctc aaaggtactg cgttggatat agtcggtcac ttgttactgt       720
     ttccggaagg tgtgaaagcg gctattaaca ctttgaaagc tcgtttcgga aggccggatt       780
     tgattgtgga tcggacggtg gagaaaataa aaatgatggc agcacccaaa atggaacgac       840
     tagataccgt tgttgagttc ggttttgcgg tgaaaaggtt gatagcgacg gtgcaggctt       900
     ctggattggt ggattacatc cacgacgtta tgctgctgaa ggagctggta aaaaagttac       960
     cacctgtact gtgtatggaa tgggcacgac tccgaaagcg attgcgatca gtgaacttgt      1020
     accagttcgg aatgtggatc ggcgagcttg cggatgatct gtgcgcggtt atcgacatgc      1080
     ccgaagccag cacggagcaa gctgagagaa gcgcaccacc cgtgcgtcat aatgtgcaac      1140
     ggcacgcgcc acatcgaccc acggcaatgc agcctcaccg taccgttcca tatgtgcgta      1200
     ctactcctgc ttactgtaac gccgtggtac tccaggagga gtccagcagc ggtgtacctt      1260
     catcgagcag ccacccggag tcatcgtcgt gtatcctctg tggggggacg tgcgtgtcgt      1320
     tgagcgcctg tgagaagttt ctcaggacta cggtagctgc caggagggcg ttcatcaacg      1380
     aacgcaaact gtgtcgcaga tgtctcgaat accacaacgg aagatgcaac atcacaactc      1440
     cttgtggcgt agatgggtgc agtatcttgc ataattcact gctgcaccag gaaggcaccc      1500
     atggtaactc cggtatgtct aatgaaacaa ataataatta ttttaataca cattcaggag      1560
     tgaatgagag cgtgctgttg aagtacgtac cagtgacgct gtacgggcca cgaggaaagg      1620
     tggaaacatt cgccttcatc gacgatggct caacgtcaac gtttatggac catgggttga      1680
     tggacgaact tggtcttgaa ggcacgcccc accctgtcca gcttcattgg accggtgacg      1740
     ttacgagaga ggaaagggac tcggtacaac tctcggttaa aatatcgggt agacagggtt      1800
     cggccacgcc gtatctgcta accgatgttc ataccgtgaa ggaattggct ctcccgagac      1860
     aatcggtcaa cacttcccag cttgcggcaa aatatcagca cctacgggga cttcagctgc      1920
     cgtcgtatgc ggatgcagca ccacgcatcc tcatagggat agacaattgc atccttgggc      1980
     gttcgttgaa atgcgttgaa gggaaatggg ggcagccgat cgtctcaaaa actcgcctag      2040
     gatgggtagc gtatgggcca tgtccgatag cgaccaatac accaggagtt tccttgcaag      2100
     ctttccacac acgggtacgc gagagatccg tcgatctcgt ggctgttgag ttgaatgcac      2160
     gatcttcgcc gcgaatcatt gacgtcaaaa gtgcagagcg tagaaaggtc gaaattaggg      2220
     aaccaattcg agtgacagcg gtaccgcgta tagaaatgcg tttcatagaa aacacggtat      2280
     ttggtacttc gccgcgttgt acatatctga ggaaaggtag gattgttgtc ttagacggtt      2340
     caccaggatg tagtagaaaa cactatactc acttgccaat agaaacggcc aaagaagacg      2400
     gtaaacagga taaacaccgg agcgccgata acaatgcgga tttgatgaat gtggtgcggt      2460
     tgattgaaga tagttacacg catcgaaatc ttactcgaat aggcagaata gattcggaaa      2520
     ggtcgaagcg aattacgaaa acaccagctg aaaagaatta gcgagataat taactgaacc      2580
     gcgtatgaac ttacctttag aagcgtcggc caggtagaac cgcgtgtatg cacatttcat      2640
     tgtagcgcgg aagtaaacaa agtaacgaaa caagagtctg acagatatgc gagagtgcga      2700
     cagcgatagc ttcacactcg gggggacaa                                        2729
//
ID   BEL-25_AG-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   18-FEB-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Anopheles Gambiae genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AG_;
KW   BEL-25_AG-LTR; BEL-25_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-240
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1437-1437 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 240 BP; 90 A; 44 C; 45 G; 61 T; 0 other;
     tgttggaaac atttgtaagg ttccaacatc tgtcagacca ggcgatgttt tgatccggtt        60
     tcaaaacata taaaaaggga gaaaaaccgc gaaatcagcc cttaacgaca aaagcgagca       120
     agtgtacaaa cgattataag agagagaata aaaaacacta attttttggc actgcgttga       180
     agtagcctaa agaatttaat tctctcactt ttttacacgg gaaacaaacg ttttccaaca       240
//
ID   BEL-25_AnFu-I repbase;    DNA;    INV; 5573 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5573
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 676-676 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..5570
FT                 /product="BEL-25_AnFu-I_1p"
FT                 /note="PHD-finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEQVCSICNGANLDDAVACDRCCRYYHLACVNEDESV
FT                 HSREWTCQMCVPGTPPVGRQGFDDCTFDTPSVYFAQPAAVTLDDEAPGQGE
FT                 EPPARMRPVVATSSPNHVAKSSAPNANTLDEISRCFHKLMEELGTSRVQRR
FT                 EEPNIVERLEAVLGNFVQRMERSNGAEARVSSGRQPYSEFGENDFHELSRS
FT                 QVATRQAVKGKLPYFSGNPDEWSMFEASFNETTRLCGFSDGENTIRLQQAL
FT                 KGKALKAVQCRLRKSDNLKEVMETLRSMFGRPEIVVGTLLEQIRRQAPPKG
FT                 DKLDTLVDFAISVEEICATLRSSEVENRFDGPLMQELVDRLPPFVRLQWGI
FT                 HRVTTSQNTLQDFGKWLQTIKKAALLVTHPSPSTEHRKHVNMHVEQSAGPK
FT                 PDQRCACEQGCRHPAECAAYNGMSVSERWNLVRQKSWCKHCLKKHRNLCRE
FT                 ARVCGKDNCTAKHHPTLHNPASAPGKAINNFSHSTTAASDVLLRHVPVVLH
FT                 AGDKRIQTVALLDEGASVSLMEHSLMEELGASGILKPLCLKWTGGQHRYEN
FT                 KSMDVSIGISGLKSNDHVYEIDVRTVHRLGLPAQRVEQKELRANYKHLSSI
FT                 PLALYRETPPRLLIGMNNYHITVPLKTVEGSVNEPIATKTRLGWTVSGCIS
FT                 SQVASKTAKVVATHCIELCDCQNIDTKIDAALKGGFALDDPYNKQHVSTHS
FT                 KNEERAMMILEQKTKLVNNIYTTALLWRYDDVTLPNNRSMAMKRLTCLERR
FT                 MEKETHIRLKMNQILADHVAKGYVRKLTDHEIKAAHPRKWYLPIFPVINPN
FT                 KPGKVRIVWDAAASVNGVSLNSMLLTGPDLLAPLTSVLCRFREFKVAMAAD
FT                 IQEMYHQVLINKEDQNSQRFLWRNDATQKEPDEYVMMRMTFGAACSPSCAQ
FT                 FVKNANADRYAEQFPQAAECIKSDHYVDDMLTSVETLEEAIRLAKEVTFIH
FT                 LQGGFKLHNWMANKNEVLRVVGDNGNRLKEMMLDHSTATQKVLGMWWDANS
FT                 DTFQFKLPNKAQEVLEGKITPTKRQLLSVLMTIFDPLGLIAAFMLFLKVLL
FT                 QEVWRAGTGWDEKIPTNLEDKWKKWLACLPELQKLSVPRCYRLAIDLNSCK
FT                 TELHIFVDAGKDGYAAVAYFRIESNGQHEVALIGGKTRVAPLKYISIPRLE
FT                 LQAAVLGIRLAKTIEKAHRIPIQRRFLWTDSKDVLCWINSDHRRYSTYVAH
FT                 RVGEILENSTMNEWHWVPTLFNVADEGTKWSNLDPHTTFIKWFNGPDFLRK
FT                 PEDEWDMPSLNVRTTEEEMRQTVTVHHLTQPLIAIDRFSRWRKLQRAAAYV
FT                 WRFINNARQPKASRILGPLTHLELQQAERTLWIQVQRQEYPDEYRILQEGQ
FT                 ADTKRNRINLKKSSTLFRRSPYLDTYGVIRLHGRIDACQHISDDMKRPVIL
FT                 PKTGHLTDLIIDDYHRRYQHANHQTVMNEVRQKFDIPALRRACHRVRNNCM
FT                 TCKIRDATPTAPTMSELPAARLSPFCRPFSFVGIDYFGPFLVAVGRRQEKR
FT                 WGVLFTCLTIRAIHIEVATSLSTSSCILALRNFIARRGTPLEIYSDRGTNF
FT                 VGANRELKEAIAEVNTHELVEAMHLPDTIWKFNPPAAPHFGGAWERLVQTV
FT                 KRTLNNMRFARAPTDAVFANWLMEVELIVNSRPLTQVPVESEDEAPLTPNH
FT                 FILGSSAGTKPLSSLDDSAACLRNNWRTSQAYANVFWRKWVTSYLPTLTRR
FT                 SKWFQTKRALKEDDLVLVVDDNLPRGCWPKGRVVRTVPSKDGEIRQVHVKL
FT                 ASGKVLERPAVKIAVIDIEPRDGVLTAQNTGA"
XX
SQ   Sequence 5573 BP; 1640 A; 1310 C; 1384 G; 1239 T; 0 other;
     atttaaaaaa acctttctcc agtgttataa atcctgtgta cgctctctcc gcgtgaccgc        60
     gtgctacgtt ttcgatagga catcgaaaac acgctatctt tatcggaagg actccaacga       120
     agaaagttcg cgagtgcagt gtttcgcaag tgatttaaaa aatggaacaa gtgtgtagca       180
     tttgcaacgg tgcaaatcta gatgatgccg tcgcatgtga tagatgctgc cgatattatc       240
     atctcgcgtg tgttaacgag gacgaatccg ttcacagccg tgagtggaca tgccagatgt       300
     gcgtgcctgg cacaccgccg gtaggcagac agggattcga cgattgtacg ttcgacacgc       360
     cgtccgtgta ttttgctcaa cccgcagcag tgacgctcga tgatgaagca cccggccaag       420
     gtgaggagcc ccctgccaga atgagaccgg tagtcgccac gtcatcaccg aaccatgtgg       480
     ctaagtcaag cgccccgaac gctaatacgc ttgacgaaat tagccgctgc ttccataagc       540
     taatggaaga acttgggacg agccgcgtgc agcgaagaga ggaacctaac atcgtagagc       600
     ggcttgaagc agttctaggc aactttgttc agcgcatgga gcgaagcaat ggcgccgaag       660
     cacgtgtttc cagtggtcgg caaccttatt ctgagttcgg tgaaaatgat tttcatgaac       720
     ttagtagaag ccaagttgca acccgtcaag ctgtaaaagg gaaattgccg tatttttctg       780
     gcaatccaga cgagtggtcg atgtttgaag cgagttttaa cgaaactacg cgactttgtg       840
     gattttccga tggagagaat accatacgcc ttcagcaagc attaaaggga aaggcgttga       900
     aggccgttca gtgtcgtctt cgcaaatcgg ataacctcaa agaagtgatg gaaaccctaa       960
     gatcgatgtt cggtcggcca gagatcgtcg ttggaactct tttggagcag atacgtcgtc      1020
     aagcacctcc gaagggcgat aagttggaca cgctagtcga tttcgctatt tcggtggaag      1080
     aaatctgcgc aacgctcagg tcaagtgaag tggaaaaccg attcgatgga cctttgatgc      1140
     aggaactagt cgatcgactt cctccctttg ttcgtttgca gtggggcata catcgtgtaa      1200
     ctacctcaca aaacacgttg caggattttg gaaaatggtt gcagacaatt aaaaaggcgg      1260
     cactgctcgt aacgcacccc tcacccagca ccgaacatcg aaagcatgtc aacatgcacg      1320
     tggaacagtc tgccggcccg aaaccagatc agcgatgcgc atgtgaacaa ggatgcagac      1380
     acccagctga gtgtgccgca tacaatggta tgagtgtatc tgagaggtgg aacctggtac      1440
     gacagaaatc gtggtgtaag cactgtttaa aaaagcatcg aaatctctgt cgagaagccc      1500
     gtgtctgtgg aaaggacaat tgtacagcga aacaccatcc aacgctgcat aaccccgctt      1560
     cggctccagg taaagcaatt aataatttct cccattctac cacagcagca agtgacgtac      1620
     tcctcaggca tgtaccggtc gtattacatg caggagataa aagaatacaa accgtcgcgc      1680
     tactggacga aggcgcgtct gtatcactaa tggaacactc gctgatggaa gagcttggtg      1740
     cgtcaggaat cctgaaacca ctttgcctga agtggaccgg tggtcaacat cgctatgaaa      1800
     acaaatcaat ggatgtgagt attgggatat cgggacttaa gagtaacgac cacgtgtacg      1860
     agatagatgt gcggaccgta catcgattgg gtttgccggc gcagcgtgtt gagcaaaagg      1920
     aactacgagc aaactacaaa catctgtcat caataccgct agcgttgtac cgagagacac      1980
     caccaagact gctgataggt atgaataatt accacataac cgtgccgcta aaaactgtcg      2040
     aaggatctgt aaatgagccc atagccacaa agacccgcct gggatggaca gtttcaggat      2100
     gtatttcttc acaggtagct tcaaaaacag caaaagtagt agccacccac tgcattgaac      2160
     tatgcgattg ccaaaatatc gatacgaaga ttgatgccgc acttaaagga gggttcgcac      2220
     tggatgatcc gtataacaaa caacacgtga gtacccattc caaaaatgaa gagcgagcaa      2280
     tgatgatcct agagcaaaaa acaaaacttg ttaataatat atatactacc gcgctgttat      2340
     ggcgctacga tgatgtaaca ttacctaaca accgctcaat ggcaatgaaa cgactaacct      2400
     gtttagaacg acgaatggaa aaggagactc acatccgatt gaaaatgaac cagatattag      2460
     ccgatcacgt agcgaagggt tatgtaagaa aacttaccga tcacgagata aaggcagcac      2520
     atcctcgaaa gtggtactta cctattttcc cggtaattaa tcctaataaa ccgggcaaag      2580
     tgcgtatagt atgggacgca gcagcatcag taaatggagt gtcactgaac tcaatgctac      2640
     taaccggtcc cgatttatta gcaccattaa cgtccgtatt atgccgtttt agagaattca      2700
     aagtcgctat ggcagcggac attcaggaga tgtaccatca ggtcctgatt aataaagaag      2760
     accaaaacag ccaaaggttc ctgtggagaa acgatgcaac acagaaagaa ccagatgaat      2820
     acgtcatgat gcgaatgact ttcggggcag cttgttcgcc aagctgcgca caatttgtta      2880
     aaaatgctaa cgctgataga tacgccgagc aatttccgca agcagcagaa tgcataaagt      2940
     cagaccatta tgttgacgat atgttgacta gtgtagaaac actagaagaa gcgataaggt      3000
     tagcgaaaga agtaaccttt atccatttgc aaggcggctt taaactgcac aactggatgg      3060
     cgaacaaaaa tgaagtttta cgggtcgtcg gggacaacgg gaaccgcttg aaagagatga      3120
     tgctagacca ttcgactgca acccaaaaag tactcggcat gtggtgggat gctaatagtg      3180
     acaccttcca atttaaattg ccgaataaag cacaagaggt cctagaggga aaaataacac      3240
     ctactaagcg gcaacttttg agcgttctta tgaccatttt cgacccgctt ggcttaatcg      3300
     cagctttcat gttgttcctc aaagtacttc ttcaggaagt gtggcgcgcc ggcactggat      3360
     gggatgagaa aattccaacc aacttggaag acaagtggaa gaaatggctc gcatgcctac      3420
     ctgagcttca aaagctttca gtgccaagat gctaccgcct cgccatcgac cttaacagtt      3480
     gtaaaactga attacatata ttcgtcgatg ctggtaaaga tggatatgct gcagtggcat      3540
     attttcggat cgagtcgaac gggcaacacg aggtagcgtt gatcggtggt aaaactagag      3600
     tagcgccatt gaaatacatc tccattcccc gattggagct acaagcggca gttttaggga      3660
     tacgtctagc taaaactatt gaaaaggcac accgaatacc aattcaacgc cgattcctgt      3720
     ggacagattc aaaagatgtc ttatgttgga tcaattccga tcacagacgc tacagcacat      3780
     acgtagctca tagggtagga gagatactgg aaaactccac catgaatgaa tggcattggg      3840
     tgcctacact tttcaacgtc gccgatgagg gcactaagtg gtcaaacctt gacccacaca      3900
     ccacatttat caagtggttt aacggccctg attttttacg gaaacccgaa gatgaatggg      3960
     acatgccgtc gttaaatgtc cgtaccacgg aagaagaaat gcgtcaaacc gtcacagtgc      4020
     accatctaac acaaccgcta atagccatcg accgattttc gcgatggcga aaattgcaac      4080
     gagcagctgc gtatgtttgg cgctttatta acaacgcgcg ccaaccaaaa gcttcgcgca      4140
     tcctgggacc gttaactcat ttggagttgc aacaagccga acgcacactt tggatacaag      4200
     tacagcgtca agagtaccca gatgagtata ggatccttca ggaggggcag gcggatacta      4260
     aaagaaacag aataaatctt aaaaaaagta gcactctttt taggcgaagc ccctacctgg      4320
     acacgtacgg cgtcatacgg ctacacggac gcatcgacgc ttgccagcac atcagcgatg      4380
     acatgaaacg acctgtcatc ttaccaaaaa ctggccacct caccgacctg ataattgatg      4440
     attaccaccg acgctaccaa catgcaaatc atcaaaccgt aatgaacgaa gtccggcaaa      4500
     agttcgacat tccggccttg aggcgcgctt gtcatcgggt acggaacaac tgtatgacgt      4560
     gcaaaatccg tgacgctaca cctacggcac ccacaatgag tgaacttccc gcagcgcgtc      4620
     tttctccatt ctgcagaccg ttctcattcg ttgggatcga ttatttcggt ccgttccttg      4680
     ttgctgtcgg acggaggcag gagaagcgct ggggagtact attcacgtgt ttgaccatcc      4740
     gggcgatcca cattgaagtg gcaacaagtt tgtcaaccag ctcttgcatc ctcgcgctga      4800
     ggaacttcat cgctcgtcgc ggtacgccgt tggagattta ctcggaccgg ggcaccaact      4860
     tcgtaggagc aaatcgcgaa ttgaaagaag ctattgcaga agtcaacacc cacgagttgg      4920
     ttgaagcgat gcaccttcca gacacgatat ggaagtttaa tccgccggct gctccacact      4980
     ttggcggggc atgggagaga ctggtgcaaa cggtgaagcg cactttgaac aacatgcggt      5040
     ttgcacgtgc gccaacagat gcggtgttcg cgaactggct gatggaagtg gagttgatag      5100
     taaactcaag gccgctcacg caagttcccg tagaaagtga agacgaagcg ccattgacac      5160
     ccaaccactt tattctaggc tcatcagctg ggacgaaacc ccttagcagc ttagatgact      5220
     cggcggcctg cctgcgaaac aactggagga catctcaagc gtacgcaaat gttttttggc      5280
     gaaaatgggt cacctcatac ttgccaacgc taaccagacg aagcaagtgg ttccagacga      5340
     agcgggcttt gaaggaagat gatctggtgc tggttgtcga cgacaacctc ccgcgtggat      5400
     gctggccaaa gggacgcgta gtacggacag taccatcgaa ggacggagaa attaggcaag      5460
     tgcacgtgaa actcgctagc ggaaaggttc tagagcggcc ggcagtgaag atcgctgtta      5520
     ttgacattga accacgagat ggtgttttga cagctcaaaa caccggggcc cag             5573
//
ID   BEL-25_AnFu-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-364
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 729-729 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 364 BP; 107 A; 88 C; 87 G; 82 T; 0 other;
     tgttctgcaa aacggttcaa ttgaactttc actgccacgt cgcgttcccg ctagatgacg        60
     ctagatagcg gtttcggctg agtgaggagc ttcggctcag cgaggacatt cggctgagcg       120
     agatgagtgc cgctgaataa aagcccaccg aagctggcgc cagggctctt tccctagcga       180
     ctcagagaac aagcagaggt ttttttaaca ccataccaat tcaccacaca caatccacac       240
     actaacacac aaaatacacg tgtgcaatat agagtatagt taaagaaaac tgcgtgtcgc       300
     gagtaaatat ttagggaaag aaatccgtga ttgctggacg caatctttgt tgctggacgc       360
     aaca                                                                    364
//
ID   BEL-25_CQ-I repbase;    DNA;    INV; 6045 BP.
XX
AC   AAWU01010219;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_CQ_;
KW   BEL-25_CQ-LTR; BEL-25_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6045
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 203-203 (2011).
XX
DR   GenBank; AAWU01010219; Positions    6770     726.
XX
CC   Positions [5064-5642] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           621..6020
FT                 /product="BEL-25_CQ-I_1p"
FT                 /translation="MLYSGLRKKLRYHTPREKFSTPGATPAKTVKQQKQEQ
FT                 AAAREKSKVDESVEAYSQCCQAAQAKVQRVRVAIESAQLDHSKFNIHALNT
FT                 YLKTVDTAYAEANEYLNKIYLAAPSRRGEFEPLFVDFEELYEFVRIALCQM
FT                 IEEHTEAKAALQLAAAQNVKPLPVPLVQPGTSGIDSMTRFTPTIVLQQSAL
FT                 PTFDGKYESWFKFKQMFRDIADKCAADSAATKLHFLDKALVGKAQGAIDPQ
FT                 IIRDNDYEGAWRSLTEQFENLPALISETISRLLSLKAMTGDSFNQLKTLID
FT                 EVEKCVSSLEFHKLKMDKLSEAIVITLVSSKLDADTRKVWESSVKRGQMPA
FT                 YKQLISVLRNQQHVLERCENAKGIQKNRSSHPAARSAQTTAASKAHTAVIQ
FT                 KAASSCPVCDEKHAVEKCDAFKRSEVKIRYEKAKQLGLCFACLKKGHRTSD
FT                 CPEKVKCSKCAKRHNVLLHPEEKCAQEKSVPELKPAGSTESAPTTVAKCVI
FT                 PCRATEPPTQVLLATAVVYVYDDNGDQHKCRVLLDSGAMANFVSQRMADLL
FT                 QLKKRCVNIPVIGVSGMRTMVKFQVHVRAKSRASASEFCLDYLVVPRVTGA
FT                 LPVQKVHIDGWPIPAGMDLADPTFFEPSRIDLLVGAEAFFEMLLSGKIKMS
FT                 SDLPVLQESTLGWLVSGRVAGSAAVTTVRACQAISAPDVDAELTNLLKKFW
FT                 TIDDQTVEPKPDDDDCERHFSETHVRAADGRYVVRLPFRKEIEELGASRQQ
FT                 AEKRFNHLERRLDQNPAQKKQYSDFIKEYVDLGHGRVLAETECGTQDGYFL
FT                 PHHCVLRPDSSTTKLRVVFDASARSTTGHSLNDTMMIGPPVQDTLFEILLR
FT                 FRLHKYAFTADVPKMYRQVRVSPEDTKFQRIVWRDDRSKPLQVIELMTVTY
FT                 GTAAAPFLATRALNQLAADEKEDYPEASKVVSSSFYVDDVLSGAATIEKAK
FT                 QLQSDLVALLARGGFELHKWCANDAALLEDIPIAKQEKQLDFENHDAKDTV
FT                 KTLGLLWNPVEDHFFFRVKPLDKDRDNWTKQQVLSEIAKLFDPLGLLGPTV
FT                 ALAKMVMQETWRSGIGWNDVLPPPLMARWRKLRNALAELAEITIPRRVTTD
FT                 DARSWELHGYADASAKAYGCSIYLRNVMVDGTEELFLLCGKSRVTPVKEAE
FT                 RKQKDDAEPADMTMPRLEACAAELLAEQIVKVVKAIDIPIDRVVLWSDSQI
FT                 VLSWLEYMKPGTPVFVRNRVNRIRELTSKYEWHYVSTKNNPADHISRGLLP
FT                 KQLKKCGLWWKARHTENLGPIVMLCEKMVPDGNRVLEVISDCGSFRKLERI
FT                 FGYVLRFVGNCKKKLEDRRCGRLGREDYCAALQAMVKAVQQEEFSEDLKRL
FT                 EAGKPLNNKLNKLNPMVEKDSGLLRVGGRLSNSDLPYNQRHPMILPEKHHL
FT                 TELIIETLHTENLHVGLNGLLASLRRRFWPVNAKRAIHRVLRRCVTCFRVK
FT                 PTDTEQFMGDLPKCRVTVAEPFARTGVDYAGPVMLKQGRLKAPVKGYIAVF
FT                 VCLCTKAIHLELVTSMSTEAFLAALHRFVSRRGNVSEMKSDNGTNFIGAAR
FT                 ELTELAELLRSQMLERKLDEFCQARSIDWSFNPPKAPHQGGLWEAGVKSAK
FT                 HHLYRVLNESHLTYEEMNTLLIQIEAVLNSRPLCQQTDDPLDYRALSPGHF
FT                 LVGRELTALPEPLYDGLKENKLTRYQLVQKRKQDFYRRWCNEYLTELQQRG
FT                 KWNKGASVVRKGMLVILKQDNVPPQQWRLGRIVDTHPGKDGVTRVVTVRTS
FT                 SGEYRRPTTQVAVLPILDNETQELEETTA"
XX
SQ   Sequence 6045 BP; 1500 A; 1550 C; 1874 G; 1121 T; 0 other;
     tttggtcgta ttcgatccgg atttgcgtga ccgcgagtga aaagtgattt ctcgattcgc        60
     ggatcgggaa aagattcgat tccggctcgg ttgtccgcgt cggtgaagtg atttcggagc       120
     gttcggagta aatccggctt gccgaaaagt gaactggcac gtggttgcgg ggcagaggac       180
     gaaaagcgga gcgtccggga agattccggc ttgccgaaaa gtggttcctg ctgccgtaac       240
     agtgctgggg aagtgtgaat cccgaaaaga ttcgactcgg gtgaaaaggt cgaattccgg       300
     gaaaaaagtg attccgaacg ggccaggctc gtcggaaaaa agtgatttgg aacacgttgc       360
     gacgtgtcga gaaaagtggc ttgctgcggc ttgctgcaaa gaagaaattt cggaatcttc       420
     tcgtcgtttt cgtcgacgcc atcttgtgca agtgaaggaa cggccttttg cgcaagggaa       480
     agaaaagcct tttcaaggcc agtggtgcca gtttgtggaa aaaaagtgag gaggaagatt       540
     tgaaaagcga cgaaaaagag aagagcgaga aagtgggaga gttttgagtg gtcttaattg       600
     agctgagaag aagaaagaaa atgctgtaca gtgggttgcg gaaaaagctg cggtatcaca       660
     ccccgcggga gaagttttct accccgggtg cgacgccggc gaaaaccgtc aagcagcaga       720
     agcaagagca ggcggcggca cgggagaaga gcaaggtgga tgaatccgtc gaggcctaca       780
     gccagtgttg ccaggcagct caagcgaagg ttcagcgagt aagagttgca atcgaaagtg       840
     cgcagctgga ccactcgaaa ttcaacatcc acgcactgaa cacttacctc aagacggtgg       900
     acacagccta cgctgaagca aacgaatacc tgaacaagat ctacttggct gccccgtccc       960
     gaagaggtga gtttgaaccg ttgttcgtag acttcgagga gttatacgaa tttgtgcgga      1020
     ttgcgctatg ccagatgatc gaggagcaca ccgaggccaa ggctgcgctg cagctggcag      1080
     ccgcacagaa cgtgaaaccg ctaccagttc cgctggtcca acccggaacg agtggcatag      1140
     attcgatgac gagattcacc ccgacgatcg tcctgcagca gtcggcgttg cccacctttg      1200
     acggcaaata cgaaagctgg ttcaagttta agcagatgtt ccgggacatt gccgacaagt      1260
     gcgctgctga ctcggctgcg acgaagttgc acttcttgga caaggccctg gtcgggaagg      1320
     cgcaaggagc gatcgatcct cagatcatcc gagacaacga ctatgaggga gcctggcgaa      1380
     gtctgacgga gcaattcgag aacctgccgg ccctgattag cgagacgatc tcgaggctgc      1440
     tgagcttgaa ggcgatgacg ggcgactcct tcaaccaact gaagacgctg attgacgaag      1500
     tggagaagtg tgtgagttcc ctggaatttc acaagcttaa gatggataag ctgtcggaag      1560
     cgattgtgat cacgttggtg tcttcgaagt tggacgccga cacacggaag gtgtgggaat      1620
     cgtcagtgaa gcgtgggcag atgcccgcat acaagcagct gatctccgtt cttcgcaacc      1680
     agcagcatgt cttggagcgc tgcgagaacg cgaaggggat ccagaagaac cgcagctccc      1740
     acccggccgc ccgctctgct caaacgacgg cggctagcaa ggcgcacacg gcggtgatcc      1800
     agaaagcggc tagttcctgt ccagtgtgtg acgagaagca tgccgtggaa aagtgtgacg      1860
     cgttcaagcg tagtgaagtg aagatcagat acgaaaaggc gaaacagctg gggctgtgct      1920
     tcgcgtgtct gaaaaaggga catcgcacaa gtgattgtcc agaaaaagtg aagtgctcga      1980
     agtgtgccaa gcgacacaat gtgctgctgc accccgagga aaagtgcgcc caggaaaagt      2040
     cagtgcctga attgaaacct gctggttcca cggagagtgc accgaccacc gtggcgaagt      2100
     gtgtgatccc gtgcagagcc actgaaccgc caacgcaggt gctacttgcg accgcggtgg      2160
     tgtacgtgta cgacgacaac ggcgaccagc acaagtgccg tgtgttgctg gactccggag      2220
     ctatggcgaa cttcgtgtcc cagcggatgg cggacctgct gcagctgaag aagcgctgcg      2280
     tgaacatccc cgtcatcgga gtcagtggaa tgcgtacgat ggtgaagttc caagtgcacg      2340
     tgcgagcgaa gtccagagcc tcggcaagcg agttctgtct ggactacctg gttgttcccc      2400
     gcgttactgg ggcgctgccg gtacagaaag tgcacattga cggatggcca atacctgccg      2460
     gaatggatct ggcggacccg acgttcttcg aaccatcccg catcgacctg ctggttgggg      2520
     ctgaggcctt cttcgagatg ctgctctcag gtaagatcaa aatgtcctct gatttacctg      2580
     tgctacaaga gagcacgctg ggatggttgg tgtccggacg agtggcgggc tcagccgcag      2640
     tgacaacggt tcgagcgtgc caagcgattt ctgctcccga cgtggacgca gagctgacga      2700
     acctgctgaa gaagttttgg acgatcgacg atcaaacggt cgagccgaaa cctgatgacg      2760
     acgattgcga acggcacttt tcggagaccc acgtgcgtgc cgccgacgga cggtacgttg      2820
     tacgactgcc gtttcggaag gaaattgaag aactaggagc gtcacgccag caggcggaga      2880
     agcgcttcaa ccacctcgaa cgacgacttg accagaaccc agcgcagaag aagcagtact      2940
     ccgattttat caaagagtac gtcgacctcg gccatggcag agtgctggct gaaacggagt      3000
     gtggcacaca agacggatac tttctgccac accactgcgt gctccgtccg gacagctcca      3060
     cgacgaagct acgagttgtt tttgatgctt ccgcccgaag cactactggc cactccctga      3120
     acgacacgat gatgattggg ccgcccgtgc aagacacgtt gttcgagatc ctactgcggt      3180
     ttaggctgca caagtacgcg ttcaccgctg acgtgcccaa aatgtaccgg caggtacgag      3240
     tgagcccgga ggacaccaag ttccagcgga ttgtgtggcg cgacgatcga tccaagcctt      3300
     tgcaagtgat cgaattgatg acggtgactt acgggacagc tgcggccccg ttcctcgcca      3360
     cacgagcttt gaaccagctg gcagcagacg agaaggagga ctaccccgaa gccagcaagg      3420
     ttgtgtcgtc gagcttttac gttgacgatg tgctttcggg tgcagcgacg attgagaaag      3480
     cgaagcagct gcagtctgac ctggtggcgc tactcgcaag aggaggtttc gagctgcaca      3540
     agtggtgcgc aaacgacgcg gcgctgctgg aagacatccc cattgcgaag caagaaaagc      3600
     agctcgactt cgagaaccac gacgccaagg acacagtcaa gacgctcggg cttctgtgga      3660
     accccgtcga ggaccacttc ttcttccgcg tcaagccgct ggacaaggac cgtgacaact      3720
     ggacgaaaca gcaagtacta tcggagattg ccaaactgtt tgatccgctt gggttgctgg      3780
     gcccaacggt agcgttggca aagatggtca tgcaagaaac ctggagaagt ggcattggat      3840
     ggaacgacgt gctgccacca cccctgatgg cacgatggag aaaactgcgg aacgcccttg      3900
     ctgaacttgc cgagatcacg atcccgaggc gagtgaccac cgatgacgcg agaagctggg      3960
     agcttcacgg ctatgcggat gcgtccgcca aggcctacgg ttgcagcatc tacttgcgga      4020
     acgtcatggt ggatggcaca gaagaactgt tcttgctgtg cgggaagtcg cgagtcactc      4080
     cggtcaagga agccgaacgc aagcagaagg atgacgctga accagctgac atgacgatgc      4140
     caagactgga ggcgtgcgcg gccgagctgc tggccgagca aattgtgaag gtggtgaagg      4200
     cgatcgacat ccccattgac cgagtcgtac tgtggtccga ctcgcagatt gtactcagct      4260
     ggctggagta catgaaacct ggaaccccgg tcttcgtcag aaatcgggtc aaccgaatcc      4320
     gagagctcac aagcaagtac gagtggcact acgtatcaac caagaacaac cccgccgacc      4380
     acatctcccg tggtttgcta ccgaagcagt tgaagaagtg cggcttgtgg tggaaggctc      4440
     gccacaccga gaatctgggc ccgatagtga tgctctgcga gaagatggtt ccggacggga      4500
     accgagtgct ggaagtgatc tcggactgcg gcagctttcg gaaactggag cggatctttg      4560
     gctacgtgct gaggttcgtt ggaaactgca agaagaagct ggaagaccga cgatgtggca      4620
     gactgggtag agaagactac tgtgccgcac ttcaagcgat ggtgaaagcg gtccagcagg      4680
     aggagttcag cgaagacctg aagcgcctgg aagccggcaa gccgctcaac aacaagctga      4740
     acaagttgaa cccgatggtg gagaaggaca gtggactgct gagagtcggt ggccgcctga      4800
     gcaactccga cttgccgtac aaccaacggc acccgatgat cctgccagaa aagcaccacc      4860
     tcactgagct gatcatcgag actctacaca ccgaaaacct acacgtcgga ctgaacggtc      4920
     tgctagcgtc gctgaggcgt cgcttctggc ctgtgaacgc gaagcgggcg atacaccgag      4980
     tgctgcggcg ctgtgttacg tgcttccggg tcaaacccac cgacacggag cagttcatgg      5040
     gcgatctccc gaagtgtaga gtgacagtcg ctgagccatt tgcgcgaacc ggcgtggact      5100
     acgctggacc agtgatgctg aagcaaggac gtctcaaggc accagtcaag gggtacattg      5160
     cagtgtttgt ctgcctgtgt accaaagcaa tacaccttga gctcgtcacc tcgatgtcaa      5220
     cggaagcgtt tctggcggcg ctacaccgtt tcgtgagccg acgcgggaac gtgagcgaaa      5280
     tgaagtctga caatgggacc aacttcattg gagcggcgcg agaactgacc gaactagcag      5340
     agctgttgcg gtcccagatg ctggagcgga agctagacga gttttgccaa gcacgaagta      5400
     ttgactggag tttcaacccg cccaaggccc cgcaccaggg aggactgtgg gaagcaggtg      5460
     taaagagtgc caaacaccac ctgtaccggg tactgaacga gtcccatctc acctacgaag      5520
     aaatgaatac gctgctgatc caaatcgagg cggtgctgaa ctcgcgcccg ctttgtcagc      5580
     agactgacga cccgctcgac taccgtgctc tcagcccagg gcacttcctc gtgggccgcg      5640
     agttgacggc gcttccggaa ccgctgtacg acgggctgaa ggagaacaaa ctgacgcggt      5700
     accagctcgt ccagaagcgg aagcaggatt tctatcgccg gtggtgcaac gagtacctta      5760
     ccgagctgca acagcgcggc aagtggaaca agggagcttc cgtggttcgg aagggtatgt      5820
     tggtcatcct gaagcaggac aacgtaccac cgcagcagtg gaggcttggg cgaatcgtgg      5880
     acacccaccc cgggaaggac ggcgtcacga gggtggtgac ggttcgcacc agctccggtg      5940
     aataccggag accaacgacg caggtagcag tacttccgat tttggacaac gagacccagg      6000
     aactggagga gacgacggct tgagccaagc tcaagggggg gagga                      6045
//
ID   BEL-25_CQ-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   AAWU01010219;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_CQ_;
KW   BEL-25_CQ-I; BEL-25_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-237
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 204-204 (2011).
XX
DR   GenBank; AAWU01010219; Positions     725     489.
XX
SQ   Sequence 237 BP; 76 A; 54 C; 48 G; 59 T; 0 other;
     tgttactgca aaaaccgtag agaaaaaccc aaaaaacaac caacagattt cttccagtgt        60
     attttagttt ctggtttgac cgcaccgcct tcagcgctgc tcgacctgat ttgacagatg       120
     ccatttccgg gaagagttga gaataaacgt gtaaagagaa cggacgcgtt tttatttctc       180
     tccgactgaa aacaaaaaaa atacagtcca tttgcgcgcg agctatccgg agtaaca          237
//
ID   BEL-25_DEl-LTR repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-324
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7050-7050 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. Internal region is indetermined yet.
XX
SQ   Sequence 324 BP; 93 A; 62 C; 56 G; 113 T; 0 other;
     tgttgggagc agacaaatct ttatagctaa attaaatgta aacaatcgat tgttatctat        60
     tgcaatgaga tcactgtaaa ctccagctgc cggcattaac atatctctct ctcgctctct       120
     tgctcttgtc gttgttccct ttttggcata tatataccga ttgcggctct ctggttgttg       180
     ttgctcgttg gatctgaaga aaatacattg tcgttgtcgt tcccccgcaa tttttaagcc       240
     caaaataaat atatattata acgattaaat ttacgagtta ttatttaaat aaataaagct       300
     gccaaaaagc tggtggtgtc aaca                                              324
//
ID   BEL-25_DTa-I repbase;    DNA;    INV; 8275 BP.
XX
AC   .
XX
DT   16-JUL-2021 (Rel. 26.10, Created)
DT   16-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8275
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   a single copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1806..2504,2434..2793,2666..4693,4689..5984,
FT                 5988..7250,7186..8241)
FT                 /product="BEL-25_DTa-I_1p"
FT                 /translation="LSMPGEGDKKPTPTPEKETKTTLSSPLPSRVKQGPKS
FT                 ASPRPRSSSVTPKGRNLPSTSSKTSPRIVVSKPLAKVSSESSLVAEPENPS
FT                 ACGTQFLRVTRASRKMSVTEQPTAATAALHKFIAVSDRVSAFEDKINTPGQ
FT                 DSQSSHTLQVRLQQVRALWDKVEKEYEICSDLIAQEGSLDTLPLLQGKYDY
FT                 CYSVYETCAAQISETLERVTPQAVQAGLPPMAHFPGPIHGSLCRLKPFKPD
FT                 YLRWPTFRDLFTAVYVNNPRLTPVEKLFHLLIKTSGEAKAIVSKSPLTNDG
FT                 FASAWAALQDRFQNKRLLVNSQLKLLFQLELRFSRVGTCSKGAAVYDSGVS
FT                 NSASTFQYLHSTANSSFCFNLSSVSQESGHALKELQSTIQGCLTALAHSNI
FT                 STDNWDCLLVFLCTSKLPKLTLSLWEQSLTSKSEIPAWEEMNTFLSERYRT
FT                 LEAIEDMKPTQSVPKRLQSFETKVTPKPKGCDLCFKENHPIRLCPRFLNMS
FT                 VDARSGYIKKKQLCLNCFARGHQLRDCTSTHSCFTCRGRHHTLLHRGSPSS
FT                 SSTTSSNARPTSSPTSAPSAQQSSSRNASASTSTVQNYFAANTTAVLLSTA
FT                 IVDVYHLGTSYRARALFDSGSEATFISERMFNLLKLPFRKTQTQVSGLNQS
FT                 VSAKSTRLCQFAIRSPTKPGLQLDTAAYVLPELAGKLPSHPVPRNSLQDLP
FT                 DLQWADPNFFESSQIDLLIGADILPSVMMQGTRRNICGSLLGQETIFGWVL
FT                 TGPISNTKANRVASFTTQVHHQKEDSLDSLLSKFWEVEDLPFQMVKESDSY
FT                 CERNFLRTTKGDASGRYVVTLPFCDPENSGSDLGYSRSIALAQFLRNENRL
FT                 KRDFPLKEQYDSVIQEYLDLGHMHEVPSTHSSPTYYLPHHAVIKPESTTTK
FT                 LRVVFNASSPSANGTSLNDILHAGPVLQSDLTIQILKWRYFQYVFSADITK
FT                 MYRQIWVDPKHTPFQRILFRDKEGDIRDFELKTSYLRGQLCALPRYSSAAA
FT                 ASRGCPRGVSKSQPHSSTTYVGRVDDVLAGANSISEAHSSIQELQAALSSA
FT                 GFPLRKWTSNHMSILRNIPAEHLLHSEFLDIDTESTAKTLGIRWRAKSDEF
FT                 YFVPPEIVVEPSFTKREVLSQIARLFDPTGWLAPFIIRSKMFMQEIWLQDL
FT                 SWDDKLPSEMSQRWQAFLHEYSDLNQIRVPRWVCFQPEIKVAYHGFCDASQ
FT                 KAYGAAIYVRVEVGQKILSNLLTSKTRVAPVKTVSLPRLELCGAVLLAKMV
FT                 TAILPNMPTPSSDIRCWTDSTIVLAWLRKPACNWTTFVANRVAKITQAVPV
FT                 DCWAHVRSEQNSADLASRGVSLLELADSQLWWHGPEWLQGPQELWPAQSDV
FT                 QPNTELEQRAVEVHFSQVPSDEFLERFSKLDKALRVLAYVRRFLSRCRKGA
FT                 ISSTSRPTREEIREAEQTLISIAQRRAYGQELKHLAEKKPLPGASPINLFP
FT                 FTDQLGLLRACGRVTASRDLQYDERHPIILPYGCRLSRLLAQFTHQITLHG
FT                 GSQLIVRLIRSKYWIPKLKNLVKAVVNPCKICTIYKKRLQTQLMGDLPQDR
FT                 VSFSRPFTYTGIDYAGPFEIKNYTGRACLITKGYVCVFVCFSTKAIHLEPT
FT                 SDLTAEKFLAAFARFVARRGCPRRIHSDNGKTFVGAASLLSRDFLQAVKES
FT                 VTDVHSHQGLDWRFIPPGAPHMGGLWEAGVKSFKTLFYKATATRKYTFEEL
FT                 ATLLAKIEDCLNSRPLSPMSEDPSDLLALTPGHFLIGGPLLSMAEPEIKGE
FT                 AKSIINRWQRLKAQHQQFSARWKEEYLKELHKRNKWQFPTRNIQIVDMVVV
FT                 KEDNLPSNEWRLGRIVSVFPGADGRVRVAEVRTARGTIERPVHKVILLPME
FT                 SKEPATSSHNAPCIRLSFSLWRARNRLLPAINLFPSARSHTKPIFCLFSSQ
FT                 NNFSIMVPRPRTAQDLDSRRTRGTQSYRCRVCRGIHPLRKCKRFQKLSAEK
FT                 RLRAVLINKYCSNCLAHEHSGGTCRSTEGCKTCGGDHHTLLHMHEEVPSTA
FT                 RPHPERPARQPVFREPARPAAPTPAPVRHPVPREPARAVAPTPSQTVAAYL
FT                 RQRVVHILPTACVLLDTGSTTFEMGALIDPCMAVSSIDRSLATAYRLPVTQ
FT                 AGEDEVCTPTIRSRTGDFRLEVVLRLDPSLRIRTPIRVLSDTIRAKFADIR
FT                 LADEQFHRPSTISLALGSDLFPKLIQPGFLKLEDGLPVAQSTVFGWTVSGV
FT                 CHEE"
XX
SQ   Sequence 8275 BP; 2155 A; 2149 C; 1866 G; 2105 T; 0 other;
     tggtccttcg tcgcctgcga tctattctga tcagcgcccc ctttgcggat ttttccaaga        60
     taagtacgac tattttccaa acctttcgtc cgtggtcgcc atattccttt tccaaggcgt       120
     tatttccatc cgagtccaaa ttccaagtga aaaagtgaaa agtgatatat atatgcctat       180
     atacaagaat ataggtataa gaaacatacg cctagccgca gtgaattttt ttcgatttta       240
     aagtagcaaa gtgctttgcc aatattggcc ttctacatag ttttttcact gtgatccgct       300
     agtttccaag cgtacataca tatatacatt catatgtgca tatatatatt acagcaaaat       360
     cactttcaca tatccacgtc cggcactaaa ctgcatgttg aaaattccaa aaatacacac       420
     acacaaatca aacaaagatt aaaaaatatt atattcttta cacatatcca agtatacaca       480
     tacaaattaa tacatacaca tattgtccaa agccatataa aattattata ttatttacac       540
     attgtacata tatctacata tatattattc caaagaccca tacacatatt aacaattgaa       600
     aatcaaattt acgcgcaatt tttacataca cacaaatata aaatattttt acgccgaaat       660
     ttatagtttt atattaatgg ttaaattgtc aatttatacg atttatgaaa aattttaata       720
     aagaataaaa tatacccaaa aactaaaatt tcgttccagc aataaaataa aaatataata       780
     ttcatataca tatatccaaa aaaaaattaa ttgtgttttt aattgcgatc ctgatattca       840
     tatacatata tccgaaaaaa cttaattgtg tttttaattg ctatcctgac atacatacat       900
     atatattcgc atacataagc tccccgctat tctgcgagca gccaaaattt ttccatcaaa       960
     tacatacata catacatgag cagagcttag cgctattctg tgctaagcat cgaactccat      1020
     atacacacat acatatattt gggcaatttt tatttcatct ccgttttgtt catatgcaag      1080
     cataggcact tattcgattc aagtagtaac gagcaaaaca cagggcacca atcctacatc      1140
     cataccggaa tacaaaatcg agcgcagaaa caaaaaatta atatttttcg aatgatcgtc      1200
     aaagaaaatt tcaaggtcga tagctatttt ggattcgttt ttcagctagt ttttttagct      1260
     tcttttttct tgtgtcgcaa aagtggttaa acttcgattg tgttcctaaa ttacaaaaaa      1320
     aaattttttg ccagagaatt ccaaatctaa attctgctcc taggctacca gccatttaat      1380
     ttttttttgg ctatttaatt tttttttgaa attgattgtc gaaggttttt tcttgcggtt      1440
     gatgtgtcgc tattttttcc atcgtttcgg ttggttttgt gtttagctgt ttttcgtcag      1500
     ggagcattca gctattgttt gttgtttccg taactcttag ctatatttag ctatattttt      1560
     gtcagtgggc attcagctat tgtgtgtttc ccgaacttgt agctatattt agctattttt      1620
     ttccaataag cgttccgtaa gcggtggcta cattcagcta ttttccagat attttctagc      1680
     tatttttttc tagctatttt ctagctatat cagctaatct gctccgaacc gagtctgcgg      1740
     gtcagttttt tcgtttccta catttttttt ggcggcgggc aggccgtccg atttgaagag      1800
     cgtagctgag tatgcccgga gagggtgaca agaagccaac gccaacacca gaaaaggaaa      1860
     caaaaaccac cctttcctcg ccgctacctt ctcgcgtcaa acaagggccc aagtccgcta      1920
     gcccgagacc tagaagctcg agtgtcacgc caaaagggag aaaccttccg tcgacaagct      1980
     cgaaaacaag tccgagaatt gtcgtctcca aaccattggc gaaagtgtca agcgagtctt      2040
     cacttgtggc agagccagag aatccctctg catgcgggac tcaattcctg agggtcacac      2100
     gcgctagtag aaaaatgtcg gtaaccgagc agccaacggc cgcaactgct gcgttgcata      2160
     aattcatcgc tgtgagcgat cgcgtcagcg ctttcgagga taaaatcaat acgcctgggc      2220
     aggattcgca atcttcacac acactgcaag tccgtcttca gcaagttcga gccttatggg      2280
     ataaggttga aaaagagtac gagatctgtt ctgacctaat tgcccaggaa ggatccctcg      2340
     acacattgcc tctcctacaa ggaaagtatg actattgcta ctccgtatac gagacgtgtg      2400
     ccgcacagat tagcgaaacg ctcgaaagag tgacgcctca agccgttcaa gccggactac      2460
     ctccgatggc ccactttccg ggacctattc acggcagttt atgttaacaa ccccaggctg      2520
     acaccggtcg agaagctttt ccatctcctc atcaaaacta gtggcgaggc aaaggccata      2580
     gtgtccaaat ccccgcttac aaatgacggc ttcgcgtcag cgtgggcagc gcttcaagac      2640
     cgtttccaaa acaaaagact tttagtcaac agccaactca agcttttgtt tcaacttgag      2700
     ctccgtttct caagagtcgg gacatgctct aaaggagctg cagtctacga ttcaggggtg      2760
     tctaacagcg ctagcacatt ccaatatctc cactgacaac tgggattgtc tgttggtctt      2820
     cctgtgcacc agcaaactgc caaagttaac cctttcctta tgggaacagt cgctaacttc      2880
     gaagtccgaa attccggctt gggaggagat gaacaccttc ctgagcgaaa ggtatcggac      2940
     actggaggct atcgaggata tgaagccgac tcagtcagtt cccaaaaggc tgcaatcctt      3000
     cgagaccaag gtcaccccca aaccaaaggg gtgtgactta tgttttaagg agaatcatcc      3060
     aatcagattg tgcccgcgct ttctcaacat gtctgtcgac gcgcgttccg gctacatcaa      3120
     aaagaagcag ctatgcctga attgtttcgc tagaggccat cagctacgtg attgcacgag      3180
     cacacatagc tgtttcacgt gtagggggag gcatcatact ttgctgcatc gcggctcccc      3240
     cagttcctca agcacgactt cctcaaacgc tcgacccacg agctctccaa cctcggcgcc      3300
     ctcggcgcag cagtcctcca gtcgcaatgc atccgcgagc acctcaacgg tgcaaaatta      3360
     tttcgctgcg aatactacag ccgtcctgct gagcacggca atcgttgacg tgtaccatct      3420
     gggcacgagc taccgagccc gagctttatt cgactcggga tcggaagcga ccttcatctc      3480
     cgaacgcatg ttcaacctcc ttaagttgcc tttccgaaaa acccaaaccc aagtctcagg      3540
     gctaaaccaa tcagtttcgg caaagtcaac gagactctgc cagtttgcta tccgctcccc      3600
     aactaagccg ggtcttcaac tagataccgc agcctatgtc cttccggaat tagcgggcaa      3660
     actgccctct catccagttc ccaggaattc tttgcaagac ctgcccgatc tccaatgggc      3720
     agacccaaac ttctttgaaa gttcccaaat cgatttactg atcggagctg atattctacc      3780
     gtcggtgatg atgcaaggca ctcggagaaa catttgtggc tctctcctag gccaagagac      3840
     catcttcggc tgggtactta ccgggccgat ctccaatact aaggccaaca gagtcgcatc      3900
     cttcacgact caagtacacc accaaaagga agattcgtta gactcgcttc tcagcaagtt      3960
     ctgggaggtg gaggatctac cattccagat ggtaaaagag tcggattcct attgcgaaag      4020
     gaacttcctc cggactacca aaggagacgc cagcgggagg tacgtggtta cgctcccatt      4080
     ctgcgacccc gaaaactcgg ggtccgatct gggatattca aggtccattg cgttagctca      4140
     gtttcttcga aacgagaatc gtttaaaaag agactttccg ttaaaagagc aatatgacag      4200
     cgtgattcag gagtatctgg atctgggtca tatgcacgaa gttccatcga ctcatagttc      4260
     ccccacttac tatcttccac atcacgcggt aatcaagccc gaaagtacta cgacaaagct      4320
     tcgcgttgta tttaacgcct ccagtccatc tgcgaatgga accagcttaa atgatattct      4380
     tcatgctggt ccagtcctgc aatccgatct gaccattcaa attctgaaat ggcgatattt      4440
     ccaatatgtg ttcagcgcgg acatcacaaa gatgtaccgt cagatctggg tcgatccgaa      4500
     gcatacaccc tttcaaagaa tcctgttccg agataaggag ggggatattc gagactttga      4560
     gttgaaaacc agttaccttc ggggtcaact gtgcgccctt cctcgctatt cgagtgctgc      4620
     agcagctagc agaggatgtc caaggggcgt ttccaaaagc cagccacatt cttcaacaac      4680
     atatgtaggt cgatgacgtt ctggcagggg caaattccat atctgaggcc catagttcaa      4740
     tccaagagct acaagcagct cttagctctg ctggtttccc tttgaggaag tggacttcga      4800
     accacatgag catactacga aatattccgg ccgaacacct ccttcatagc gagttcctcg      4860
     atatcgatac cgaaagcacg gccaaaacac tcgggattcg atggagggct aagtccgacg      4920
     aattctactt cgtgccgcca gaaatagtgg tggaaccctc ctttacaaag cgggaggtgt      4980
     tgtcccaaat cgcgaggttg tttgatccaa ccggatggct cgctccgttt ataatacgtt      5040
     ccaaaatgtt tatgcaggag atttggctac aagatttaag ctgggatgat aagcttccca      5100
     gcgaaatgag tcagaggtgg caggcgtttc ttcatgagta ttccgatctc aaccagatcc      5160
     gcgttccgag atgggtctgt tttcagcctg agatcaaagt ggcgtatcat ggattctgtg      5220
     atgcgtccca aaaggcttat ggagcggcga tctacgttcg cgtcgaagtg ggtcagaaaa      5280
     tactttctaa cctcctcaca tccaagaccc gagtcgctcc agtcaagacc gtgtcccttc      5340
     cacgtctaga gctatgtggc gccgtgttgt tagccaaaat ggtaactgcg attcttccta      5400
     atatgcccac accaagttcc gacatacgct gctggaccga ttcgaccatc gttctggcct      5460
     ggttacggaa gccggcgtgt aactggacca cgtttgttgc caacagagtg gccaagataa      5520
     cgcaggcagt accagtcgac tgctgggcac acgttcgatc cgaacaaaat tccgccgatt      5580
     tagctagtcg aggcgtgtcc ctactcgagt tagcggatag tcaactttgg tggcacgggc      5640
     cagagtggct gcaagggcca caagagctgt ggccagccca aagcgatgtg caaccgaaca      5700
     cagagctcga gcagcgcgcg gtggaggtgc atttcagcca ggtcccttct gacgaatttc      5760
     tcgaacgctt ctcaaaactt gacaaagcac tgcgagtcct ggcgtatgtt cggcgcttcc      5820
     taagtcgctg ccgtaagggc gcgatctcct ctacttcccg acccacgagg gaagaaatcc      5880
     gagaggcaga acaaacgctg atttccatcg cgcaacgtcg agcatacggc caagagctga      5940
     agcacttggc agagaaaaag ccccttccgg gggcaagtcc aatttgaaac ttgtttccgt      6000
     tcacggacca actcggcctc ctaagggcgt gtggtcgcgt tacagcttct agagacctcc      6060
     agtatgatga acggcatcca ataattctgc cctacggctg tagactgtct cgccttctcg      6120
     cccaattcac ccaccagatt actcttcacg gcggtagtca gttgatcgta cgcctgatcc      6180
     gatcgaagta ttggattcct aaactcaaga atctggtcaa ggcagtggtg aatccgtgta      6240
     agatctgcac aatttacaag aagagactgc aaactcagct gatgggcgat cttccacagg      6300
     acagagtatc cttctcgagg ccttttacat atacgggcat tgattatgcc gggccgttcg      6360
     agattaaaaa ctataccgga agagcgtgtc tcattaccaa gggatatgta tgtgtatttg      6420
     tgtgtttttc cacgaaggct atccatttag agccgacatc cgatctcacc gccgaaaagt      6480
     tcctagccgc ctttgctcgt ttcgtagcta ggcgcgggtg ccctaggcgg attcattctg      6540
     ataatggcaa gacgtttgtg ggggcagctt ctctactttc tcgggacttc cttcaagccg      6600
     tcaaagagtc tgtgactgat gtacatagcc atcagggact tgactggcgc ttcatcccgc      6660
     ccggggctcc gcatatgggg ggtctgtggg aagcaggggt gaaaagtttc aaaactcttt      6720
     tctataaagc cacggctacg cgcaagtata cgtttgagga acttgcgacg ctcctagcca      6780
     agatcgaaga ttgcctcaac tccagacccc tatccccgat gtctgaagat ccctccgatc      6840
     tgctagccct cacgcctggc catttcctga ttggcgggcc gttgctttcc atggctgagc      6900
     ctgagataaa gggcgaagcc aagtcgataa tcaatcgatg gcaacgtttg aaagcccaac      6960
     atcagcagtt tagtgcgcgg tggaaagagg agtatctcaa agaactccac aaacgcaaca      7020
     aatggcaatt tccgacccga aacatccaaa ttgtcgatat ggtggtagtc aaggaggata      7080
     atttgccctc gaacgaatgg cggctcggca gaattgtttc tgttttcccc ggagccgatg      7140
     gccgagttcg agtggctgaa gtccgtacgg cgcgcggcac aatagaacgc cccgtgcata      7200
     aggttatcct tctccctatg gagagcaagg aaccggctac ttccagccat taatctattt      7260
     ccgtctgcga ggtcacatac taagccaatt ttttgtctct tttcctcgca gaacaacttc      7320
     agcataatgg taccgcgtcc ccgcacagcc caggatttgg acagcagacg tacccgaggt      7380
     actcaatcct accgctgccg agtctgccgg ggcatccatc ctcttcggaa gtgcaagagg      7440
     ttccagaaac tgagcgctga gaagcgcctt cgggcagtac tgattaataa gtactgctcg      7500
     aattgcctcg cccacgagca ctcaggaggg acctgccgaa gcaccgaggg atgtaaaacg      7560
     tgcggggggg accatcatac gctgctccac atgcacgagg aggtgccatc gaccgctcgt      7620
     ccacaccctg aacgccccgc tcgtcagccc gtcttcaggg agcctgctcg gccggcggcc      7680
     cccactcctg cgccggttcg tcatcccgtc ccaagggaac cagcgcgtgc agtggccccc      7740
     actccatctc agaccgtggc ggcctatctg cgccagaggg tggtccacat cctcccgacc      7800
     gcctgcgtgc tgctcgacac cgggagcacc acgtttgaga tgggggccct gatcgacccg      7860
     tgcatggcgg tcagcagcat tgaccggtcg ttggcgacgg cataccggct gcccgtcacg      7920
     caggcaggcg aggatgaggt ctgcacgccg accatccgat cccgcacggg cgacttcagg      7980
     ctcgaagtcg ttttaaggct tgatcccagc cttaggattc gcacgccaat acgggttctg      8040
     agtgacacca tccgggccaa gttcgcggat atccggctcg cggatgaaca gttccatcgc      8100
     ccatcgacca tttctctcgc gttgggatca gacttgttcc ccaagctgat ccaaccgggg      8160
     ttcctaaagc tggaagatgg gctgcccgtc gctcagagca ccgttttcgg atggaccgtc      8220
     tccggagtgt gccacgagga gtaatcctga cgcttgctgc cgcaaggggg gagaa           8275
//
ID   BEL-25_DTa-LTR repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   16-JUL-2021 (Rel. 26.10, Created)
DT   16-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-335
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A single copy.
XX
SQ   Sequence 335 BP; 67 A; 104 C; 76 G; 88 T; 0 other;
     tgttcgcgcc ataagggcgc ttagtttcga gcggcagtgt aagagcgagc gctgcactgg        60
     tgcttgcact cccgcttgca ctcccgctct ccgttgctct cccgctcccg gcgaaaccca       120
     ccactccgcg gtccgggtct ttttttcctc tttagtttaa gttagtctta atggtgaagc       180
     ctgaataaaa acgtgaattt tgaatctcgc cgcgttatat ttcgggactt gggaatttac       240
     cagcagcggc aaccaccccc atacgacttc tacggccaac atccggccac gatagccgga       300
     gctatatttt ggacaactcc gcccactcca tttca                                  335
//
ID   BEL-25_SiCu-I repbase;    DNA;    INV; 5340 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5340
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4999-4999 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..5302
FT                 /product="BEL-25_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAKAIEAAFKKLEGNLKVLENSVTRLDQFVNGDVVQE
FT                 EDAEVELYLLREQYRVVSRQFDSYTTLLQSSGLDYEADIQLQRKADLIRNI
FT                 AFTERYCAQQIGSSSSDMPTGATAADLHRASKLPKRELPKFDGNVRNWMSF
FT                 WGAYQEIHNDKHLSDSEKLHYLLQSTVVDSPAHKVVSSFPSSGANYKSAVD
FT                 RLTERFGRKKTLIKVYMRDLLKLVVENSTKEGEIDFIDLVTCIDSQIRNLG
FT                 QLGVTQDKFGELLYPVVESCIPAAVLDNYLRSQDHKEELQDLMEFLQNEVR
FT                 RRMETDLAKNQFLEEDTKSTSGRVNKKGNSNKNGNGNKAIKAAAGFLNTAG
FT                 RSEKPACIFCQKPNHNATECRLAIKFDLEKRKSILKEKNACFKCFKLGHGT
FT                 RSCRAKMLCYLCERDHHVLMCNQNERMKHCDDQQEKAANAEQQPANEASKD
FT                 GESKPSMANVVSRPEVLLQTLTVWVHGPKGAIKARAAFDSLSQTSYIKEEL
FT                 ARKLDLPVIGEETVIHQTFGGAETKPQQHKVYEMKISGVNEDSQYQYEISG
FT                 IPKISSGIQQIPLGDYIEECIRKGITLTDLNSVSSEIEVLIGADYGDDLKI
FT                 GGEYIKLKAGPVAMKTKIGWVLSGRLNSTVKRRGKLAMMNLQSTLTDKEMS
FT                 NLWSLETIGIEDPAETKSREDLEKAAIEHFQRTVDQDDQGRYTVHLPWIEG
FT                 HLPLPDNRVIALKRLHTTTRKLKEGGHLNDYDKVFKSWLEEGIIEIVEPPA
FT                 NIALCHYLPHRAVFKEGSTTPLRPVFDASARARDSPSLNDCLEKGPNLLEL
FT                 IPAILTRFRLDEIGVVADIKKAFQQMNVTEQDRDRARFLWWKNPDDCKDVI
FT                 EFRHARVVFGVTASPFLLGATLKHHIENFPSYPETCEILKSCFYVDNAVTS
FT                 LATIDDAKTFQNEACAVLSSGKFDLRGWEFGPSSEDKNVAILGLIWNLKDD
FT                 ELQFDCRNLITNMKVPATKRNLYKMINMLYDPLGFASPVTVTAKILLKKVC
FT                 TGDKLGWDEKLNDKHTQEFEKWKQQLCDLQDIRIPRHIHAKDNNAKLSLHC
FT                 LSDASMDCFAACVFLRSESGGEVKISLVQSKTRVSPQKGVTIPRLELLSCL
FT                 IGARLANTVKKDMAMDIPVYYWTDSTTALTWIRKDECWATFVANRVKQIRE
FT                 LTNPQQWKHVPGALNPADLPSRGCSVKKLMDSKWWFGPEWLYAPERKWSHD
FT                 APAADETEVNKEKKKTVVSALGFRVPVVNLNKELLRLSSYTKIVRVLAHIR
FT                 RFYGKIKKNNSTTGELTTEEICEAETFLLRYMQQNLEEADMRKMKIFKDGQ
FT                 GIIRLKSRLVQGEEKESFVFPAVLPNKHPIVALLIQHEHEALRHAGVQFLQ
FT                 AHLRERYWIIKSRRTIRNVVHKCAVCRRHLAKRCKVPEAALPFERIRTTKV
FT                 FDVTGVDVTGPLFVEKGKKMWVVLFTCGVYRAVHLELVSSLSTEAFLGALQ
FT                 KFVARRGRPTTVFSDNGTNFTGTSNLLKSIKWEEVQRQASLQKIRWRFNPP
FT                 SAAWWGGWWERLIGLVKQLLRRVLGNRFVKLAHLEVLITEVEAIMNDRPLT
FT                 YQSEDPDDLRCLTPSHFLRDLPVAVLPEIEMVDGRAFRMNLSKLQKMKQAL
FT                 RERFRKEYLGQLIHRGKYEHKTQLNPGDVVLVELDNHKRLDWPMGIILETY
FT                 EGEGEAARVAKIKTTKGIMVRPLQRLFPLEVQSKDKDAETPAEPNPPEDAE
FT                 GADGS"
XX
SQ   Sequence 5340 BP; 1633 A; 1244 C; 1306 G; 1154 T; 3 other;
     ttgtggcgaa cctgccagga tagtgcagaa aacaattaat tgaacaatta atttttcgtg        60
     aaaatcgtga aaacgtgaac tttatatttt tgtctcacag tgccccgtaa agtgaactct       120
     cgtcgaaatg gctaaagcta tagaagcagc ttttaaaaag ctggaaggca acctgaaagt       180
     gctcgaaaac agcgttacca ggttggatca atttgtgaat ggagatgtcg tccaggaaga       240
     agacgccgag gtsgaactct acttgttgag ggagcagtac cgggtggtgt ctagacaatt       300
     tgacagttat acwactctwc ttcaaagtag cggattggat tacgaagcag atatccagct       360
     ccagagaaaa gctgatttaa tcagaaacat agctttcacc gagcgatact gcgcacaaca       420
     aataggctcc tcatcatcag acatgcccac cggtgctacc gctgccgacc tccacagagc       480
     atcaaaacta ccaaaacgtg agttgccaaa gtttgatggc aacgtaagaa attggatgtc       540
     attttggggt gcatatcaag aaatacacaa cgacaagcac ctcagcgact ccgaaaaact       600
     acactatttg ctacaaagca ccgtcgtcga ctcgcccgcc cataaagtcg ttagtagttt       660
     cccgtcatct ggagccaact acaagtctgc cgtggaccga ctgacagaaa gattcggccg       720
     caagaagacc ctcatcaagg tctatatgag agacctgtta aagttggtgg tggaaaactc       780
     gacaaaagaa ggtgaaatcg acttcatcga cctcgtgacc tgcatagact cccagatccg       840
     aaatctgggg caacttgggg tcactcaaga caagttcggt gaattgctgt acccggtggt       900
     agagagttgc atccctgctg ccgtattaga taattacttg cggtctcaag atcacaaaga       960
     agaattacaa gatttgatgg agttcttgca aaacgaagta cgccgccgta tggagactga      1020
     cctggccaaa aatcaattcc tcgaagaaga taccaagtca accagtggac gagtgaacaa      1080
     gaaaggcaac agcaacaaaa atggtaatgg gaataaagcc attaaagctg ctgctggatt      1140
     cctcaacaca gcggggcgaa gtgagaaacc agcttgtatc ttctgccaga agcccaatca      1200
     caacgcaact gaatgtcgtc tggcaatcaa atttgatctg gagaaaagga aaagcatttt      1260
     gaaagaaaag aatgcttgtt tcaagtgctt caaactggga catggtacga gatcctgcag      1320
     agccaagatg ctgtgttacc tgtgtgaaag agatcatcat gtactgatgt gtaaccagaa      1380
     cgagaggatg aagcactgtg acgaccaaca ggagaaagct gccaatgcgg agcaacagcc      1440
     agcaaatgaa gctagtaagg atggtgaaag caaaccctcc atggcaaatg ttgtttctcg      1500
     acctgaggtt ctcctgcaga cgctcacagt ttgggtccat ggtccaaagg gagctatcaa      1560
     agctagagca gcgttcgatt cgctgtctca gacctcctat atcaaagagg agttggcaag      1620
     aaaattggac ctccccgtca ttggagaaga gaccgtgatt caccaaacat ttggaggagc      1680
     tgaaacgaaa ccacaacaac acaaagtcta cgagatgaag atttccgggg taaatgaaga      1740
     ttcgcaatac cagtacgaaa tctctggaat tcccaagatc tccagtggaa tacaacaaat      1800
     accgcttggg gactatatag aagaatgcat tcgaaaaggc atcaccctca cagacctcaa      1860
     cagcgtttca tcagaaatag aagtcctcat tggagcagac tatggagacg acttgaaaat      1920
     cgggggtgag tatatcaaac tcaaagctgg tccagtggct atgaaaacta aaattggctg      1980
     ggtgctctcg ggaagactca acagcacagt gaaacgaaga ggaaagttgg ccatgatgaa      2040
     tctacagtct actttaactg ataaggaaat gtcaaatcta tggtcccttg aaacaattgg      2100
     gattgaagac cctgcagaaa cgaagagccg agaagacctg gagaaagcag cgattgaaca      2160
     tttccaacgc actgtggatc aagacgacca aggccgctac actgttcatc tcccatggat      2220
     tgaaggtcac ctcccactgc cagataaccg tgtgatagct ttgaagaggc tacacacaac      2280
     caccagaaaa ctgaaagaag gagggcactt aaacgactac gataaagttt ttaaatcgtg      2340
     gcttgaggag ggcattatcg aaatagtgga gccccctgca aacatagctc tgtgccacta      2400
     tctaccgcac cgtgccgtat tcaaagaggg atccactacg cccctccgtc cggtcttcga      2460
     cgcctcagca agggcccgtg actctccatc attgaatgac tgcttggaaa aaggccccaa      2520
     cttgctggag cttattcctg ccatcctcac ccgttttcgt ttggacgaaa ttggtgtggt      2580
     ggcagacatt aaaaaggcgt tccagcagat gaacgtaacc gaacaagacc gggacagagc      2640
     gagattcctc tggtggaaga atcctgacga ctgcaaagac gttatcgagt tccggcacgc      2700
     gagagtggtc tttggagtga cggccagtcc cttcttatta ggtgcaacat taaagcatca      2760
     catcgaaaat ttccccagct atccagaaac gtgcgagatt ttgaagtcct gtttctatgt      2820
     ggacaatgcg gtgaccagcc tagcaacgat agacgatgcc aaaacatttc aaaatgaagc      2880
     ttgcgccgtc ctcagttccg gtaaattcga cctccgaggg tgggagtttg gcccatcctc      2940
     tgaagataaa aatgtggcca ttttggggtt aatatggaat ctgaaggatg acgagctcca      3000
     gttcgactgc cgaaacctca tcacaaatat gaaggtgcct gcaacaaaac gaaacttgta      3060
     caaaatgatc aacatgctgt acgaccctct cggttttgcg tctccagtca ctgtcacggc      3120
     gaaaattttg ctgaagaagg tctgcacggg ggacaaactt ggatgggacg agaaattaaa      3180
     tgacaagcac actcaagaat tcgaaaaatg gaaacagcaa ctgtgtgact tgcaggatat      3240
     tcgtataccc cgtcacatcc acgcaaaaga caacaacgcc aaattatctc tccactgcct      3300
     gagtgacgca agtatggact gcttcgccgc ctgtgtattt ctgagaagcg aaagtggagg      3360
     agaagtaaaa atttcacttg ttcagtcaaa aacaagagtc agcccacaaa aaggggtaac      3420
     aatccccaga ctggaattat tgtcctgcct tattggagca agacttgcca acaccgtgaa      3480
     gaaagacatg gcaatggata ttcccgtcta ttactggacc gactccacaa ccgccctcac      3540
     ctggatccgg aaggatgagt gctgggcaac gtttgtagcc aaccgggtga agcagatacg      3600
     cgagctgaca aatccacaac aatggaagca tgttccaggt gccctgaacc ctgcagacct      3660
     cccgtctcga ggctgctccg taaaaaagtt gatggattca aaatggtggt ttggcccaga      3720
     atggctatat gctccggaga gaaaatggtc tcatgatgcc cctgcagcag acgaaaccga      3780
     agttaataaa gaaaagaaga aaaccgtcgt ctccgccttg ggatttcgag ttccagtggt      3840
     caacctaaat aaagaattgt tgcgcttatc cagctacaca aagattgttc gcgtactggc      3900
     tcacatccgt agattttatg gaaaaataaa gaaaaataac tcaacaacag gagagctgac      3960
     aacagaggaa atatgcgaag ccgaaacctt tcttcttcga tacatgcagc agaacctaga      4020
     agaagccgat atgaggaaaa tgaagatttt taaagatggc caagggatca tccggctcaa      4080
     atctagactt gttcaaggag aagagaaaga atcgttcgtc ttcccagcag ttctcccaaa      4140
     taaacatccc attgtggctc tactaattca acatgaacat gaagctctac gccacgccgg      4200
     ggtccagttt cttcaagcgc atctacgcga gcggtactgg atcataaaaa gtcgacgtac      4260
     catacgaaac gtggtacaca agtgcgccgt ctgcaggcgc catttagcca aacgatgcaa      4320
     ggttcctgaa gcagcgttac catttgagag gatccgcact accaaggtgt tcgacgtgac      4380
     gggtgtggac gtgaccgggc ccttatttgt agaaaagggc aagaagatgt gggtcgttct      4440
     cttcacctgc ggggtctacc gtgcggtcca ccttgagttg gtcagcagcc tatcaacgga      4500
     ggctttcctt ggagctctcc aaaaatttgt cgctcgacga ggccgcccaa ccactgtctt      4560
     ttcagacaac ggtaccaact ttacgggaac gagtaacctg ctgaagtcca taaaatggga      4620
     agaagtacaa cgccaagcca gcctacagaa gataagatgg cgcttcaatc ctccaagcgc      4680
     tgcatggtgg ggaggatggt gggagcgcct tatcgggctg gtgaaacaac tgctacgccg      4740
     tgttttgggc aaccgttttg tgaagttagc ccacctggag gtcctcatca cagaggtcga      4800
     agccatcatg aatgatcgac ccttaacata ccagtcggaa gatccagatg acctgcgttg      4860
     cttgacgccg tcacacttcc ttcgggacct tccagtcgcc gttctgcctg aaatcgagat      4920
     ggtcgacggg agagcattca ggatgaatct ctccaaatta caaaaaatga agcaagcgct      4980
     acgagagcgc tttcgaaagg agtatctggg gcagcttatc caccgaggga agtacgagca      5040
     taaaactcaa ctcaaccctg gtgatgtggt gcttgtggag ctggataacc acaagcgtct      5100
     tgactggccc atgggtatca tcctagaaac ctacgaaggg gaaggggagg cagcgagagt      5160
     agccaaaatc aagacaacaa aagggatcat ggtacgaccc ctgcagcggc tattcccact      5220
     ggaggtccag tccaaggaca aggatgcaga aactccagcg gagcccaacc ctcctgaaga      5280
     tgctgaaggt gccgacggat cttaaagggt gttaattaga gtaattaaca gatgggagta      5340
//
ID   BEL-25_SiCu-LTR repbase;    DNA;    INV; 791 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-791
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5022-5022 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 791 BP; 237 A; 139 C; 138 G; 276 T; 1 other;
     tgtcccgatc cgcggtagaa tttacattat ttagataaag tcgccagttc tcaatttttc        60
     cttttttgat ttgattattt ttgtagagac tggttaattg gtttttaaga aaaatttgtt       120
     tatttgttca atttaatgtc atttgcataa aaatatgtcg ttaatgaaac tttgagaaaa       180
     tgattagatt attgaaactg gtcgaaacca gctcaattag tctgctaaag caatttttgt       240
     aatgttaaaa gttgagtaag atgccagtcg cctggcttcg ttaaaaccaa gataattcaa       300
     tttaactggg cgaaatcctc gattttcttg ggtagccttc tgcacgctcg gtagtttttc       360
     ctatcactag ctccttgctc cctgtgaagc aacaagcttt tcgttctctt gtaaaaatta       420
     ttatttcgcc ccagcgaggc attctaacct gcttcaagcc aaccaacaat tctgtagaaa       480
     aaagtcgagt tgtacttgag taggcatttt tcagttattt caaataagcc gaaaaaggct       540
     caaaattatt cttgttaaaa taattcgggt tgtgattaaa atcgttaaaa tcataaaccc       600
     ttcgatcttg tactcttggc gagttatttt ttgtcatctt cattatgcat ttcatgggag       660
     aagcggcacg agcgtgamtt atgcgaaaaa acaatgttca taatgcactg tcctgagatc       720
     cgaacatatt ttattcttct gtgaagtcaa tattgcgcaa aaatatttga aaactcatcc       780
     gaaacgcaac a                                                            791
//
ID   BEL-25_SpEx-I repbase;    DNA;    INV; 5696 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5696
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6905-6905 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..5516
FT                 /product="BEL-25_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MAPLDNSLKLLIAKRDRIFARLQTIADKIINIHSQDL
FT                 TRESFLCDLEIVDSLRKDFESVLDEIATVELKLNPDYVVNYQALSSFEDLL
FT                 GRIKRAGKTLQAQSHSEVKRSPRLPPIEIPEFNGDIKNWPLFIASYRNTVH
FT                 NNSSLTDCEKLYYLVGKLTGKARSICAGINPSADNYPLIFDSLCKRYEDKR
FT                 QQAISYLDQLFEFKIISSGTPNNLELFLDRFASSVAALKNLHINDLADFIL
FT                 FYVALKKLDIDTGRTFECTRTLKPNSSEFPSFSELVSFVRDHIKVLERTSS
FT                 SVARVTNNKKLADRKPTTTHAYTSSSESSVCSLCSEQHDYIYKCRIFNSYK
FT                 PDQRFKFVKSNNLCINCLSSGHRVSSCGSISTCKKCNSKHHTLLCFDSKQA
FT                 SNSPHSNAARALPPSASAAVAAAGQPAAAPAIFTTAPLLSSEATSAPTPPR
FT                 TGIALCSLSENHIESKHRGPTTVLIATARIIIVDSHGNEHSVRALLDSGSQ
FT                 SNFITSDCCRRLGLNINNRPSCSTVKGIGGSSKTIQGSVNIKFYSRFDLNI
FT                 NYCLESLVVDKITGRLPTATVDASLLYNFKNLPLADDTYFSPAPIQVLIGA
FT                 SIFPHLLLSNKVQGQPPHASPLALETVLGYVIVGEAPVRTPDSESTVSYCC
FT                 TTDSLDSAVRKFWELEEVSVSPILSPDDKLCEEFYTRTTTRDSSGRYVVAL
FT                 PFKGDVESLGDSRQVSERRFYCLERKMQASPQLKVAYDNVILEYLEKGYIS
FT                 PTNSVSSEISYFIPHHGVIRDDKITTKLRVVLDGSCKTSTRVSLNDLLYGG
FT                 QNLQGNLFNIIVNFRLFSIALSADIRQMFLSIGIRESDRRFQRILYRFSPQ
FT                 EPLKVYEFNRVVFGLKSSPFHALRTIKQLAEDEGGSYPQAKEIVASGLYMD
FT                 DFVYSVASEDQGISTASEMIGLMKAGQFELVKWTSNSQPVLDSIPPSHRLP
FT                 AVKEFDESDQHKVLGLCWSPTSDQFSMKVNTPAQHCTKRTILSCVAKIWDV
FT                 MGFVAPVVLYAKLLIKQLWLCDCDWDDTPPEDIVRLWTHFKEELPMLSRIK
FT                 IPRHVGIVSDSVVTILAFADASEKAYGGVIYFHVKNSDGNTVNLLTAKSKV
FT                 SPKKVVSLARLELCAILVLAQLIKNVVVACQNRVVIRNIFAFSDSTVALCW
FT                 VHSSPHRWNTFVANRVSKIHNDLSPQNLYHVSGTDNPADCLSRGLTPSQII
FT                 DHPLWFHGPPWAHLDVSQWPVAPFNSSSVLEAPEEKKHSLLSATPNERSLI
FT                 LSLANRISSWSKLLRVVIYICRFAKLLPLRYRIAASDYDFAELLVLRELQT
FT                 HFFSTEIVKLREGKDCSPFIRHLKPFLKGGLIRVGGRLSNSDLSYDGKYPI
FT                 LLPSKDPILNLLVDYHHKVNCHAGPDLLMSLLRQKYWILSARNLIRSRVHK
FT                 CLPCFRLRPKPNFPEMADHRSCRVVQSAKPFVHTGTDYAGPFKVTMSRGRG
FT                 VRSTKAYVCLFVCMTTRAVHIELAGDLSTARFMDAFKRFLSRRGPVSRIYS
FT                 DNGTNFIGAKRKLSELHELLCSKHHNTEFGRMLAENRIDWSLNVPTASHFG
FT                 GNWEANIKSLKSHLYRTIGDTVLSFEELSTVLTQVESVMNTRPLCRTLSSD
FT                 PSEPLALTPAHFLNLTPLKYLPVEEIEAKSIVTRHQLLDKLVQSFWKRWRG
FT                 GYLHTLQSRRKWNTPVDPVVVGTVVVLKTDNSPPLHWPLGVVEEVFPDSNG
FT                 VTRIVRVKTASGSYLRPVVRLCPLPNL"
XX
SQ   Sequence 5696 BP; 1452 A; 1267 C; 1197 G; 1778 T; 2 other;
     tttggtccta tcgagccgga ttcgtatttg aaattagcca ttcattagtt cattttcgtc        60
     aaacccgcat agtttcgtac ctaccttgcg cgtcgagaag ttaggtaggt aggtaactgt       120
     ttcgctwaca tttttcgttt aatttcgcca accccgcaaa tataattgac atactcacga       180
     attctggtgc ctaggtatct atttagttga tagatatcta ccttccagtc gcttcctata       240
     catatttgtt ttttcgtaag tcgtaggccg tttaaatggc gccgttagat aactcgttga       300
     agctgctaat agctaaacga gatagaatat tcgctcgctt gcaaactatt gccgataaaa       360
     ttataaatat ccattcgcaa gatttaacta gggaatcgtt tctatgtgac cttgaaatag       420
     tagattcttt gcgtaaagat ttcgaaagtg tgttggacga gattgccacc gtcgagctta       480
     aattaaatcc tgattatgtt gttaattatc aagcactttc ttctttcgaa gaccttttag       540
     gccgcataaa acgwgcaggt aaaacactgc aagctcaatc gcattccgag gtcaaaaggt       600
     caccccgctt gcctcctatc gaaatacccg aatttaacgg agatattaaa aattggcctt       660
     tatttatagc tagttatcgt aataccgtac acaataatag ttcgctaacc gattgtgaga       720
     agttatatta tttggtaggt aagttgacag gtaaggctcg ttcaatatgc gcgggtatta       780
     acccctccgc ggataattac ccccttattt tcgattctct ttgtaaaagg tatgaagaca       840
     aacgtcaaca ggcaatttca tacctagatc agttatttga atttaaaatt atttcgtcgg       900
     gtacccctaa caatttagaa ttatttttag ataggttcgc ttcgtctgta gctgcgttga       960
     aaaacctaca cattaatgac ctcgctgatt ttattttgtt ttatgtcgct cttaaaaaac      1020
     tcgacataga cacgggccgt actttcgagt gcactcgtac attaaaaccg aatagttctg      1080
     aatttccgtc gttttccgaa ttagtcagtt ttgttcgtga ccacataaag gtgctggaac      1140
     gtacgtcatc gtctgttgct cgggtcacca acaataaaaa acttgccgat cgtaaaccta      1200
     ctactacaca tgcctatacg tctagttccg agtcatccgt gtgtagtcta tgcagcgaac      1260
     agcacgatta catttataaa tgtaggattt ttaatagtta caaaccagat caacgtttta      1320
     aattcgtaaa gtctaataat ttatgtataa attgcttaag tagtggtcat cgtgtttcct      1380
     catgtgggtc gatatctact tgcaaaaaat gtaattctaa gcatcacact ttattgtgct      1440
     tcgatagcaa acaagcaagt aactcgcctc attcaaacgc ggctcgcgcg ctgccaccgt      1500
     ccgcgtcggc cgccgttgcc gcggccgggc agccggccgc tgcgcccgcc atttttacaa      1560
     cagcgccgct gctatcgagt gaagctacct ccgcgcccac gcctccgcgc acgggcattg      1620
     cgctgtgttc gttatccgaa aatcatatcg agagtaaaca tcggggccct actacggtac      1680
     tcatagctac tgctcgtatt attattgtag attcgcatgg aaatgaacat agtgttcgcg      1740
     cattgttaga cagtggctct caaagtaatt ttattactag tgattgttgt cgtcgcttag      1800
     gtttgaacat aaataatcgg ccttcttgtt ctactgtaaa aggaattggg ggttcgagca      1860
     aaactattca gggttccgta aatattaaat tttattctcg tttcgatctt aatataaatt      1920
     attgtttaga gtcgttggtg gtagataaaa ttactggacg tttgccgaca gccactgttg      1980
     acgcttcgct tttatataat ttcaaaaatt taccgttggc agacgataca tatttttccc      2040
     cagccccgat tcaagttttg atcggtgctt cgattttccc gcatttactt ttatcgaaca      2100
     aagttcaagg acagcccccg catgcttcgc ctctcgcttt agagacagtc cttggctatg      2160
     ttattgtagg tgaagctcca gtccgcactc ctgatagtga gtcgactgtc tcgtattgtt      2220
     gtaccacgga ctctttagac tccgctgtcc gcaaattctg ggaattagag gaggtgagtg      2280
     tttcccccat actgagcccg gacgacaaat tatgtgagga gttttatacc cgcactacca      2340
     ctcgggatag tagcggacgt tacgtagtcg ctttaccttt caagggtgat gtcgaatctc      2400
     ttggggactc gcgccaagtg agtgaacgtc ggttttactg cttggaaaga aagatgcaag      2460
     cttctccaca attaaaggtc gcgtatgaca atgttatcct ggaatattta gaaaagggtt      2520
     atatttcacc tacaaattct gtctcttcgg aaatctcgta cttcattccg catcatggtg      2580
     tgatccgcga tgacaagatc actaccaaac ttcgtgtcgt tctcgacggt agttgtaaga      2640
     cctctacccg cgtttcgctc aatgatctct tgtacggtgg tcaaaactta caagggaact      2700
     tgtttaacat aatcgttaat tttcgtttgt tttcgattgc cctttccgca gacatccgtc      2760
     agatgtttct cagtatcgga attcgagaat ccgatcgtcg tttccaacgc attttgtatc      2820
     gcttttctcc gcaagaacct ttgaaggttt atgaatttaa tcgtgtcgtt tttgggctta      2880
     aatctagccc atttcatgct ctgcgcacta taaagcagct ggcggaggat gagggtggtt      2940
     cttatcctca agccaaagaa atcgtagctt cagggctgta catggatgat ttcgtttatt      3000
     cggttgcctc agaagaccaa ggcatttcca ccgcctcgga aatgataggt ctcatgaagg      3060
     ctggtcagtt tgaattagtc aaatggacca gtaattctca acctgtatta gattcgattc      3120
     ctccctccca tcgcttgccg gctgtcaaag agtttgatga gtctgaccag cataaagtac      3180
     tcggcttgtg ttggtcacct acttcagacc agttcagtat gaaggtgaat actccagctc      3240
     agcattgtac caagcgcaca atactgtcgt gtgtcgctaa gatatgggat gtcatgggat      3300
     tcgtcgcgcc tgtcgtcctg tatgctaaac ttctcatcaa gcagctctgg ctgtgcgatt      3360
     gtgactggga tgatacccca cctgaagata tcgtcaggct gtggacccac tttaaggaag      3420
     agctacctat gctcagtcgc ataaaaatcc cacgtcacgt aggtattgtc tccgatagtg      3480
     tcgttactat cttagctttc gcggacgcta gtgagaaagc ttatggtgga gttatttact      3540
     tccatgttaa aaacagcgat ggtaatactg tcaacttgtt aactgctaag tcgaaagttt      3600
     ctccaaagaa ggtagtgtct ctggctcgtc ttgagctatg tgctatactt gtactagctc      3660
     agctcataaa aaatgtcgtt gtcgcttgtc aaaaccgcgt ggttattcgt aatatatttg      3720
     cattttcaga ctctactgtc gcgctttgtt gggtacattc gtcgcctcat cggtggaata      3780
     cctttgtggc caacagagtg tctaaaatac ataatgactt atctccacaa aatttgtatc      3840
     acgtgtccgg tacagacaat cccgctgatt gtctctcacg tggactcacc ccttctcaaa      3900
     ttatcgacca cccgctttgg tttcatggtc ccccgtgggc tcacttggat gtctcacagt      3960
     ggcccgtcgc tccatttaat tcctcttcag tgctcgaagc acccgaagag aagaaacatt      4020
     cgttgctttc cgccacacca aatgaaagat ctcttattct atctttggct aatcgtattt      4080
     cgtcttggag taaattactt cgtgtggtaa tttacatttg tcgatttgct aaattgttac      4140
     ctcttagata ccgcatagca gcgtcggatt acgatttcgc tgaattactg gttcttcgtg      4200
     aacttcaaac ccattttttc tccactgaga tcgtcaaact cagggaaggc aaagattgta      4260
     gtccttttat tcgacactta aaaccgtttc tcaaaggcgg actcattaga gtcggaggcc      4320
     gtcttagcaa ttcagatttg agttatgatg ggaaataccc cattttactc ccaagtaaag      4380
     atcccatttt aaatttgctc gtcgactacc atcacaaggt taattgtcac gcaggtcctg      4440
     atttgttgat gtcgctcttg cgtcagaagt attggatact ttctgctaga aacttaatta      4500
     gaagtagagt acacaagtgt cttccttgct ttcggctcag accaaagcca aactttcctg      4560
     agatggcaga tcatcgttcg tgtcgtgttg ttcaatccgc aaaaccgttc gtccacacgg      4620
     gcactgatta tgctggtccg tttaaagtta ctatgtctcg cggccgcggt gttcgttcca      4680
     ctaaggctta cgtgtgtctg tttgtctgca tgactacacg cgcggtgcac atagagctgg      4740
     ctggtgatct cagcacagct aggtttatgg acgctttcaa acggtttctt tcaaggcgtg      4800
     gcccagttag tagaatttat tcggacaacg gaactaactt cataggcgct aaacgcaaac      4860
     tgtcagaact ccatgaactt ctttgctcta aacatcataa tactgaattt ggtcgtatgt      4920
     tagctgaaaa tcgtatagat tggtcgctca atgtccccac tgccagtcat ttcggcggca      4980
     actgggaggc taatatcaaa agtttaaagt cacatttgta tcgtaccata ggagatactg      5040
     ttctttcctt tgaagaacta agtaccgtac ttactcaagt cgagtctgta atgaatacac      5100
     ggcccttgtg taggacactc tctagtgatc cttcggaacc actggctttg actccagcgc      5160
     attttttgaa tcttacgcct ttaaaatact taccggtaga agaaatagag gcaaaatcca      5220
     tcgtgactag acatcagctg ttagataaat tagtacaatc gttttggaag cgctggagag      5280
     gtggatacct tcatacatta caatcgcgtc gtaaatggaa cacgccggtg gacccagtcg      5340
     ttgtcggtac ggtagtcgtt cttaaaacag ataattcacc cccgctacac tggcctttgg      5400
     gcgtcgtgga ggaagttttc cctgactcaa acggagtgac gcgcatcgtt cgggtaaaga      5460
     cagcgagtgg gtcctacttg cgtccagtcg tgcgtctatg cccgttgccc aatttataaa      5520
     atatttaaaa gtccgttact catatgtgtt tattagtgtt taggtagatt aggcaaatac      5580
     ttagttttcg ttttagttcg tttcgtatgc ttttttagta taattatcgt ataaattaat      5640
     ttaatttcgt aaatggcttc aactcttgaa agcatccctt tcaagcccgg ggggaa          5696
//
ID   BEL-25_SpEx-LTR repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-25_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-460
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6933-6933 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 460 BP; 101 A; 108 C; 102 G; 147 T; 2 other;
     tggttgsgcg gtaattttct tatttaattt tcggtaggaa ttcgtaatgt tggtaatatt        60
     actggtggtt gcaatcctgt tccccatccc tttcccgcac atacgctwac acacgcgttg       120
     gagcgagagg cgacactagc gctcttgagt cgtgtgtgca accttacgaa aagaatctca       180
     atggctgaca tcgcgcgcga gagttcgctt cgttctccgc tacaaaaatt gatatttgtg       240
     gaaaaactgg tgtgatttgt gcaaactgac tcgtgaaagt gctccttcgt caaagaagac       300
     ggcgtagaag acctgcaggt attgtgctcc ttccttttgg catactttct cgtttttgtg       360
     tcacccgcag tatgccgagt ttcccatctt atttgtaacc gccagtattt tcaagttttc       420
     gcaacccctt tcgcgcttaa ttgcatttct cgcgtaaaca                             460
//
ID   BEL-260_AA-I repbase;    DNA;    INV; 6978 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-260_AA_;
KW   BEL-260_AA-LTR; BEL-260_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6978
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2528-2528 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5026-5604] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(586..1605,1609..5985)
FT                 /product="BEL-260_AA-I_1p"
FT                 /translation="MMAPNLRRLAKGERFCRDSLKNLAHLVDNYQEDRDRV
FT                 MLEGWKERLEEIFDDYKDTRLQLEVSEDFQNTLKQQLEAKALEQSEAGIEV
FT                 DPQSLEQVNREARANFESTYLRLKGFILSKIRANGDIPREPTLVQAPVQQI
FT                 RVKLPEIKLPTFDGTIKEWPSFRDSFQSLIASNPQLSDVDKFSYLLSSLSK
FT                 EAKRVVEVIEVTSANYAVAWELLEKRYENKYLIVKSYVEALFSVDSIKREC
FT                 HESLHRLIDTFERNLMMLEKAGEQPANWSTLLVFMVSSRLDPATLRHWETH
FT                 RKSTMVPTYTELIDFLRSHSLVLQSIDTSKGRPSDPSRSSTHRPPTQAKPN
FT                 LAHSAITAQKSCPFCKQVAHSPYQCEVFRKMTPAQRFEATKKNALCINCLS
FT                 PSHIVKACMSGTCRVCQQRHHTMLHQRPVASNSPSVQPTIKPSDSQPSSSS
FT                 TPTNRPQSSLLHKQSQQVEIQTQATAVPAPQTSHFSMPFTEAQRTVPATVL
FT                 LSTALVKVFTSSGSPLWARALLDSGSQLNFVSENLAQKLKLRRTKEFVPIS
FT                 GVGLSSVSSKHTTSIRIQSHCADFEETWKFHVLSKLTLELPNQAVDVSRSN
FT                 WPSDIVLADPTFDRPSSIDLILGVDIFYDLLRDGQLKNGCGEPVLQNTALG
FT                 WVVSGKVEGKVPVSVSHLAHISPSSTIEDQLARFWEIESCYIQSTHSVEEA
FT                 ECEEFFAKTTVRDSSGRFIVALPTKPSLISKLGNSRDIADRRFFSLERRLN
FT                 ASPALKQAYSAFIHEYVQLGHMKLIEDVQPGPFPAYYLPHHCIVRPDSLTT
FT                 KLRVVFDASCTTDSGISLNDALRVGPVIQDDLLTIVLRFRMPQFAIIADIE
FT                 KMYRQIRVRDSDQPLQRIRWRDSPTQPLQTFQLTTVTYGTSSAPYLATKCL
FT                 QKLSEEGAESHPAAAIVLGRDFYMDDMLTGTDSIDEGRNLCQELIELTNSA
FT                 GLPLRKWASNSSAVLEAVPSHLRDERTLFELDSSASPIKALGLQWDTTSDL
FT                 LQFSVPKYTTQIPITKQSVLSDIARLFDPLGLAGPILVQAKLFLQDLWRDG
FT                 CEWKEPLTESRQHQWLELRDSFRQLADLSIPRWVVATTSVVSLELHGFSDA
FT                 SERAYGACVYIRAVSNTGSIHVNLLTAKSKIAPKGKGLKGGVVSLPRLELC
FT                 GALLLSHLFEKVESSLNLKAKNFFWTDSEITLYQITANPSRWKTFVANRCS
FT                 EIQRITANGIWSHVPGSENPADIISRGMPPAQLREHTIWWKGPDWLSQPSR
FT                 FWPALGRPTNRTFTSEELEERTVSLPAQIQTPNELFSLYSSYSRLVRIVAL
FT                 LRRFAHNTKTADKGSRRTGFLSTTEINEGTVILVKLAQTERFGQELLDVAR
FT                 DKEIKPNSRLVALNPILVDGVLRVGGRLRHAPISFEQRHPMILPDKHPLAE
FT                 LIMVHYHWKLLHAGPQLLAAVVRERFWPLRVRNLARRVVHACTRCFRCKPK
FT                 VLEQLMGELPPERVQPAFPFLHTGVDYCGPFMCRPTRRATAVKCYVSVFVC
FT                 LVTKAVHLECVADLTTNSFLAALKRFVARRGKPKLIQCDNALNFQGAKREL
FT                 EELARLFRSQQHRDQVTRSCLEDGITFKFIPPRSPNFGGLWEAAVKSMKNH
FT                 LRRTVGNVILYQDEFWTLLTQIESCLNSRPLTQLSSDPNDLEVLTPGHFLV
FT                 HRSLTAIPEPSLADIPSNRLDRYQQTQEYVRRIWSQWQSEYLSGLQPRTRW
FT                 TKRHNNIQVGTLVLVKEDNLPPLKWSIGRITKIYRGDDDCIRVVDVRTKDG
FT                 EYRRGISKICVLPNQPEGGDAAEPKEGN"
XX
SQ   Sequence 6978 BP; 1791 A; 1808 C; 1660 G; 1713 T; 6 other;
     taaagtatgg tccttcgagc cggatgattt gcttttggga attgtgcttg cgattttgtc        60
     gtcgtcggtt tggagtgatc tcgagtgatt tcgtgcaaaa accgtgaccg atcgagaaaa       120
     gaatacggac aagcggataa atataaancg aatcgaatcg aacgatcgaa cctcgagtcg       180
     cgtggtcgct gcgatcaagt ggttggtgct atcggtcgct gataaagtgc aaaaagaagc       240
     caccgaagaa tatttcaatt gtgaagccgt gctattgaga gtgaggaagt attgttccag       300
     atttctttgg cgccgaattc gatagcttgg cttgggtgtc gccgagcagc gtggcttggg       360
     cgtcaccgcg cggggtggct tgggtacctc atcaacgact gtaagtactg aactgcatgc       420
     tgcatgtgac ccgatcgtca ggaaatacca cttttctgcg atttcctgca tcgctgaatt       480
     tttgagaatt tttgcatgag ctgattggta gtaaatcgtg gatttttaga atttgctgat       540
     ctgtgttaag cacgtgtata gcctactacg attgtttaag tgctaatgat ggctccaaat       600
     ttgagaaggt tggcgaaagg agagcgtttc tgccgcgatt cattgaagaa tttagcgcat       660
     ctggtagata actatcaaga agatagagat agggtaatgc ttgagggttg gaaggagcgt       720
     ctagaggaga tttttgatga ttataaggac actaggttgc agttagaggt ttctgaagat       780
     ttccagaaca cgctcaagca acagttggaa gcaaaggcac tagaacaatc ggaggcagga       840
     attgaagttg atccacaatc tctcgagcaa gtgaatagag aagcacgtgc aaattttgaa       900
     tccacgtatt tgaggctgaa gggtttcatt ttatccaaaa ttcgcgctaa tggagatatt       960
     cctcgggaac ccacactggt ccaggcaccg gtacagcaga ttcgagtaaa actaccggag      1020
     atcaaattgc caacttttga cggcactatt aaagaatggc cgtcgtttcg tgattcgttt      1080
     cagtcgctaa ttgcctcaaa cccgcaactc agcgacgtgg ataaattttc ctaccttctt      1140
     tcgtcactct cgaaggaagc aaagcgtgtg gtcgaggtga ttgaggtaac ctccgccaac      1200
     tatgcagtgg cgtgggagct ccttgagaag cgctatgaga acaaatacct tattgtaaag      1260
     tcgtatgttg aagcgctgtt ttctgtcgat tcaataaaga gggaatgcca tgagtcttta      1320
     catcgcctaa tagatacttt cgagcgtaat ttgatgatgt tggagaaagc aggagaacag      1380
     ccagccaact ggagtacgtt gttggtcttc atggtcagtt ctcgtctaga tcctgcaacg      1440
     ttacgtcact gggagactca tcgaaagtca accatggtcc ctacatacac cgaactcatc      1500
     gatttcctac gcagccatag cctcgtcttg caatcaatcg acacttccaa aggtcgacca      1560
     tccgatccct ctcgctcctc cacacaccgt ccccctacac aagcaancaa gccgaattta      1620
     gcacattcag ccattaccgc tcaaaaatcc tgccccttct gtaaacaggt agctcactcg      1680
     ccctaccaat gcgaagtgtt tcgaaaaatg actcctgcac agcggtttga agccacgaag      1740
     aaaaacgctc tttgcatcaa ctgtctgtca ccttcgcata tcgttaaagc ttgcatgagt      1800
     ggaacctgca gagtgtgcca gcaaagacac cacacgatgt tgcatcagag acccgtcgcc      1860
     tcgaatagtc catcggtcca accgaccatc aaaccgtcag actctcagcc atcgtcgtcc      1920
     tcaactccga ccaaccgtcc tcagtctagt cttctgcata aacagtctca gcaagtcgaa      1980
     atccaaaccc aagccaccgc ggtccctgcc cctcaaacca gccacttttc gatgcctttc      2040
     accgaagccc agcgcactgt tcctgccacc gttcttttgt cgacggctct ggtgaaggtt      2100
     ttcacttcat ctggttctcc attgtgggcc cgcgccttgt tggattctgg atcgcagctg      2160
     aacttcgtct cggagaatct cgcccaaaaa ctgaagcttc gtcgaaccaa ggaattcgtt      2220
     ccaatcagcg gggttggcct ttcgtccgtt tcgtccaaac acaccacatc tatccgtatc      2280
     caatcccact gtgctgattt cgaagagact tggaaattcc atgtgttgtc caagctaacg      2340
     ttggagctgc cgaatcaagc tgtcgatgtt tctcgatcta attggccttc ggatattgta      2400
     ttagcagacc caacattcga ccgccctagt tcaatcgatt tgatactagg cgtggacatc      2460
     ttctacgacc tgctccgtga cggtcaactc aagaatggat gcggggagcc agttttgcag      2520
     aacaccgccc taggatgggt ggtatccgga aaggtagaag ggaaggttcc tgtgtcggtc      2580
     tcccaccttg cccatatttc gccaagttct acgatcgagg accagttagc gcggttctgg      2640
     gaaatagaat cgtgctacat ccagagcacg cactccgttg aagaagcaga atgcgaggag      2700
     tttttcgcaa aaacgaccgt aagggattct tctggccgtt tcatcgtcgc ncttcctacc      2760
     aaaccttcgt tgatctcgaa gcttggaaac tccagagaca ttgccgatcg tcgcttcttt      2820
     tctctggaac gtcgcctcaa tgctagtcct gcgcttaagc aagcctactc cgcgttcatc      2880
     catgagtatg tacagctggg acatatgaag ctaatagaag atgtacaacc gggtccattt      2940
     ccggcttact atttgcctca ccactgcatt gtcagaccag atagcctcac caccaaatta      3000
     cgggtggttt tcgatgcgtc ttgtactacc gacagcggca tttccctcaa cgacgctctt      3060
     cgagtaggtc ctgtcatcca ggacgactta ctgaccatcg tccttagatt ccgaatgccc      3120
     cagtttgcca tcatcgcaga catcgaaaag atgtatcggc aaatccgagt gcgggattca      3180
     gatcagccat tacaaaggat ccgatggaga gattcgccga ctcaaccact gcaaactttc      3240
     cagcttacta cggttactta cggaacgtct tcggccccgt accttgcgac aaaatgtctg      3300
     cagaagcttt ccgaagaagg tgccgaaagt catcccgctg ctgccattgt tctcggtcgt      3360
     gacttctaca tggacgacat gctcaccgga accgatagca tcgatgaagg tcggaatctc      3420
     tgccaagaat tgatcgaact gactaactca gctggtctac ctctccgcaa atgggcttcg      3480
     aacagttcgg ccgttttaga agcagtacct tcgcatctga gggatgagcg aactcttttc      3540
     gagctcgatt cctcagcctc acccataaag gcattgggac ttcaatggga cactacttcg      3600
     gatctgttgc agttcagcgt tccgaaatac accacgcaaa tcccgatcac caaacagtca      3660
     gtactgtcgg acatagctcg cttgtttgac cctctaggtc tagctggtcc tatattggtt      3720
     caagcaaagc tttttctcca agatctttgg agagacggtt gtgaatggaa ggagccgctc      3780
     acagaatctc gtcaacatca atggttagag cttcgagata gttttcgtca actggccgac      3840
     ctcagtatac cccgatgggt tgtcgcaacc accagtgtcg tgagtctcga gcttcacgga      3900
     ttttccgatg cgtctgaaag agcgtacgga gcttgcgttt atattcgcgc ggtatccaac      3960
     actggtagca tccatgtcaa cctacttact gctaaatcca agatcgctcc gaagggaaag      4020
     ggattgaaag gaggagttgt gagtctccct cgcctcgaac tttgtggcgc tctcttgctg      4080
     agccacttgt tcgagaaggt cgagtccagt ttgaacctca aggccaagaa tttcttctgg      4140
     acagattctg agatcacgct ctatcaaatt accgcaaacc cttctcgttg gaaaaccttt      4200
     gtcgccaacc gttgttcaga aatacagcgg attacagcca atggcatatg gtctcatgtg      4260
     ccaggttcgg agaaccctgc ggatataatc tccagaggaa tgcctccagc tcaacttcgt      4320
     gaacacacta tctggtggaa gggaccggat tggctttcgc aaccatccag attctggccg      4380
     gctcttggtc gtccaactaa ccgaacgttc acttccgagg aactagagga aaggacagta      4440
     tcgctacccg cccaaataca gacaccaaac gagctctttt cgttgtattc ttcgtactcc      4500
     aggctcgtcc gaatcgttgc cttacttcgt agattcgccc ataacacaaa gacngcagat      4560
     aagggaagtc gtcgtactgg attcctctct actacagaga ttaacgaagg cacagtaatt      4620
     ctcgtgaagc ttgcacagac ggaacggttc ggtcaggaac tactggatgt cgcacgtgat      4680
     aaagaaatca aacccaactc tcgcctcgtc gctctcaacc cgattttggt agatggcgtc      4740
     ctgcgggtcg gtggccggct gcgccatgct cctatttcgt tcgaacaacg ccatccgatg      4800
     attttgccgg ataaacatcc tctcgccgag ctaataatgg tccactacca ctggaaactc      4860
     ttacacgccg gaccgcagct tctcgccgcg gttgtacggg aacgtttttg gccgcttcgg      4920
     gtcagaaatc ttgcccgacg agtggtccac gcttgcacac gctgcttccg ctgcaaaccg      4980
     aaggttttgg agcagcttat gggagaacta ccacctgaac gtgtgcaacc agccttccca      5040
     tttcttcaca ccggggtcga ctactgtggc ccattcatgt gtcgtcctac ccgccgcgcc      5100
     acggcagtga aatgttacgt ctcggtgttc gtctgtcttg tgacgaaggc ggtccatttg      5160
     gagtgcgtag cagacttgac caccaactct tttctagccg ccttgaagcg tttcgttgct      5220
     cgcagaggca aaccgaagct aattcaatgt gataacgcgc tcaatttcca aggagctaaa      5280
     cgggaactcg aagagctagc ccgtctgttt cggtctcaac agcatcgaga tcaagtcacc      5340
     cgtagttgct tggaagatgg aattactttc aaattcatcc ctcccagatc cccgaacttc      5400
     ggtggactct gggaggcggc tgtaaagtcc atgaagaacc atttgcgtcg gaccgtaggg      5460
     aatgtgattc tctaccagga cgaattttgg accttgctaa cccaaataga aagctgcctt      5520
     aattctcgtc ctttgacaca gctatcatcg gatccaaacg atctagaggt gctcacacct      5580
     gggcatttct tggtccatcg atcgctcacn gccatcccag agcccagcct agccgacata      5640
     ccgtccaatc gactggaccg gtatcaacag acacaggagt acgtccgtag aatctggagt      5700
     caatggcagt ccgaatacct gtccgggctg cagcctcgta ctcggtggac caagcggcac      5760
     aacaacatcc aggtcggcac gttggtactg gtgaaggagg acaatcttcc tccgctgaaa      5820
     tggagcatcg gacgtatcac gaagatctac cggggagacg acgattgcat ccgagtcgtc      5880
     gatgtgagga cgaaggacgg agaatatcgc cgaggtatct ccaagatctg cgtgttacca      5940
     aatcaacccg aaggtggcga cgccgccgaa cccaaagaag gaaactagga tccttccatc      6000
     gaacgcagtg ttccactgcg caccattggg aggtcaaatg gcctcccatt catgtaagtc      6060
     gttgtatttc attatatttc aaaaaaaata atagaatttt cgtccccctg cgtctgcgat      6120
     gtcatcgagc accgatctac cactacgaga gaggttcaag ctggcttcaa cggtctgtag      6180
     ctgacccaat gcatccactg tacgtcggat agacttgtgg atcagctagg tggaaagcga      6240
     agacttgaga taccaagcta gtaaccaatc aacgtcgaat cccgcttcga aggatgttcc      6300
     gctacccaac tcatcatcac tcattgaagg atgtcaccat tcaccaaatc agactcatca      6360
     atgcacaagc gcgctcagtg cttcgctgcc aacggtcatc gtccgataga ggacccgtgg      6420
     aggccggttg cctccgctcc agttaagtat tgtttttatt gtgttctcga tagtatgaaa      6480
     aagccgccta tgtttgtttg cagtatacca ccccgaagac gacgacccga ggagcccgat      6540
     gagaaggaag cccaacaccc accattcacc ccatttccat ccaagcaagg ccaaggtcag      6600
     acacgatcgg ccatacccga acagtcacat ggcccgatcc agcaattgcc gaactgtcgc      6660
     cgaaatagca cgtggagaag tacctaaata ctggacgaag ttagcgcgaa caccgaatga      6720
     agacggcaag caggagaccc agcagcagaa ggagcgacat gccatcgtag cacgaagaat      6780
     aagttatttg aactctcaag cgacggataa agcggattgg aattggaaag aaccaataat      6840
     gaattcgaaa tagtagatta ggacatagtt tagtatgaag cccggccaat aggattagta      6900
     gataaattag ttaaaatttg cattttcacg gtggccggca tgttgaatct caancaaact      6960
     gtagcgtaat ttaaggac                                                    6978
//
ID   BEL-260_AA-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-260_AA_;
KW   BEL-260_AA-I; BEL-260_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-301
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2529-2529 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 301 BP; 90 A; 87 C; 42 G; 79 T; 3 other;
     tgaattcaac tgctcgaata tgctacatca atagttgtct cgcttcngcc catgtgccaa        60
     cattattaga agatcacagc atccgatcgg atcaccgatc gttatcagat cctatcttta       120
     nacctatctt cccgcttacc gataaaaccc gatagccatc agagctctaa ctcagtcgca       180
     aataaaccct taaccgcatc acactgtata tcgccgcgta tattcagtng agcgaataaa       240
     gtcgttcttt cgttcccccc caaaaatcga agcacaatca ttccaaattc gaaatcctac       300
     a                                                                       301
//
ID   BEL-261_AA-I repbase;    DNA;    INV; 6336 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-261_AA_;
KW   BEL-261_AA-LTR; BEL-261_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6336
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2530-2530 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5376-5948] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(141..1901,1905..6335)
FT                 /product="BEL-261_AA-I_1p"
FT                 /translation="MQSEKVCGKCSTRGLLGQMVGCDMCDVWFHAACVGES
FT                 DSNLNPDRTWRCVHCAKDDVGEVCSQHANRSMRSSASSRARRELLLQQLEE
FT                 QRALQLKQRAEEDAIRKKRAEEDEAFLQQKLDLILEDDNESRRSKLSSRAS
FT                 RKKVEEWLHDDHGGPSGVIGASTNKVIPQQAEALQPGHFGSTAHIPGSVPS
FT                 TSGLQGAAPTSTSTPQTGKTTKLVQVEASQTSVSQYSGPFDTFANYTRNNL
FT                 GNSRLPKPNLATMGVVGQHFPPYASSQIPQVSDMFENCNTKSAVAETKVTF
FT                 SGYIPQLEPGKLRNLYGPHCESVLNNQTITVNQPVPRSTIVPPFVGVQTAV
FT                 PLVPPSVTVPNVFATVSSSSAAACHPSFEQRASMTNAAEPFLGANSTELDQ
FT                 GVQQFNGSRMGVPDQLVPSSAQLAARQVMPRELPSFSGDPEDWPLFASSFY
FT                 NSTAACGFTDAENLARLQKCLKGHALDSVKSRLLMPQSVPHVMETLRKLYG
FT                 RPEVLIHTLLRRLRIVPPPRTENLQSVITFGLAVRNLVDHMFVAQLMDHLR
FT                 NPMLLHELVEKLPSSMKMQWSWYKRSQVEVNLATFGEFMTLVNTASDVTLP
FT                 VDPSSQQSKSSCQTGRDKQKLFVHVEARDEHAAPKNTADLSKFSIRPDGVK
FT                 KYCCYCSNEKHEVAECPQFRALDVDGRWKAIRSNGLCRTCLIPHRKWPCRS
FT                 EKECGVDGCRLRHHALLHSRVVAEFAINRVKGPENPVENISHQNHHSTMNF
FT                 CFFRYLPVTLEVNGKQIETFAFLDDGCQTTLMDAEPAADLNVAGPAESLWL
FT                 GWTGNISREEKGSQRVTVNISGSGLKSQYQLNNVRTVQKLQLQGQTFEYEE
FT                 LRKMYPHLRGLPLRSYVDAVPRLIIGIEHAQLLTSLKVREGKANEPVAVKT
FT                 RLGWCVYGKQAGESPAVERLHVHMEGRRFGNRELHDLMKQYFAVEEAAVAI
FT                 PIESADDSRARRILEETTRRVEGRFETGLLWKYDRPVFPDSYPLALRRLLS
FT                 LEKRLDKDQALRSRVILLIRDYEAKGYAHKITQEELTSSDSDRVWYLPLGV
FT                 VRNPKKPEKIRLIWDAAAKVHRLSLNDMLLKGPDMMTSLFAVLLRFRQRTI
FT                 AICGDIREMFHQIRIIPQDKQSQRFLFREHQDDLPQVYVMDVATFGATCSP
FT                 CSSQFVKNKNAREFESQFPKAAEAIINAHYVDDYLDSVDTVEEAVQLVNEV
FT                 KYVHALGGFEIRNFSSNSSEVLRRLGEAERTSKSLDLDSSEHVERVLGMVW
FT                 KPAEDVFTFDVRIEDDLKDFLEQNVVPTERQVLRLVMSLFDPCGLIAHFIV
FT                 HGKVLMQHIWRTGTEWDDEIPIELHCMWRDWIQLLKRLIEVQVPRCLFGAA
FT                 NSKVPATIQLHVFVDASELAYACCAYLRIVQAGVVHCGIVAAKTKVAPLKP
FT                 LSIPRLELQACVLGCRLMETICVSLKLTIERRYLWADSATALAWIRSDSRR
FT                 FHPFVAFRVGEILNTSNVDEWFHVPSKLNVADDATKWGSGPSFSPSGRWYI
FT                 GESFLFQPMTEWPQQVRLPSSTEEELRAVFHFHQELPVPLIDVTRFSNWSR
FT                 LLRTAAYVYRAVQKFSGRGTNRELTSDELLQAENYLWRQAQMHAYPDEYSV
FT                 LKHKLQNPDGTPKQLEKSSPLFRESPFMDDAGVIRMNSRISSAPSAPFETK
FT                 YPVILPKDHILTRLLVDSYHRRFLHGQNETVFNEVRLRFRIHQLRPVIKRV
FT                 ARDCQRCKILKSVPQAPMMAPLPAVRLTPQVRAFSYTGVDYFGPILVKQGR
FT                 SLVKRWVALFTCLTIRAVRLEVVHSLSTQSCVMAIRRFISRRGAPAAFYSD
FT                 NGTCFKGASNILADQLQTIHEDCALTFTNARTTWHFNPPSAPHMGGCWERM
FT                 VRSIKVAMAALAEHPRHSSDEVLETVILEAEAIVNSRPLTYIPLDNAEEQA
FT                 LTPNHFLLYGERGVVQPRSSFMVEGETLRDSWKQAQYLTDQFWKRWVREYL
FT                 PTLTRRTKWFQPTKPLEPGDVVFVVDVNKRNGWLRGRIIRVFSGKDGQVRR
FT                 AVVQTSEGVLSRPAVKLDVHPNRKKTEAEVPRNYTGGG"
XX
SQ   Sequence 6336 BP; 1743 A; 1458 C; 1644 G; 1491 T; 0 other;
     aacttcaaga tttccggtat cagtcaacac cgcgaagtag gtaaccgatc gttactcacg        60
     acaccgtgta ctggatacgc cgtgtagtag acggccgcta ctgaagtcct gtgtagtaaa       120
     cagccaacga aattgatacg atgcagtccg aaaaggtgtg cggcaaatgc tcgacgagag       180
     gcttgctcgg acagatggtc ggatgcgata tgtgcgacgt ctggttccac gctgcttgtg       240
     taggggagtc agattcaaac ctcaatccag ataggacctg gaggtgcgtc cattgtgcga       300
     aggacgatgt cggagaggtt tgtagccagc acgccaatag gtcgatgagg agttcggcga       360
     gtagcagagc tcggagagag ctccttctcc aacaattgga agagcaacgc gccttgcaac       420
     taaaacaacg cgcggaggaa gatgcgatta ggaaaaaacg tgctgaggag gatgaagcct       480
     ttcttcaaca aaaactggac ctaattcttg aagacgacaa cgaaagccgg cgtagtaagc       540
     tgagcagtcg ggccagccgt aaaaaggtag aagaatggct ccacgatgat catggtggtc       600
     catcaggagt gatcggtgcg tcaactaaca aagtcatccc acaacaagca gaggctctac       660
     agccgggaca tttcggctcg acagcacaca tcccgggctc agtaccatca acgtcgggac       720
     tgcagggagc agctccaaca tcgacgtcaa cacctcagac aggtaaaacg actaaattag       780
     tacaagtaga ggcttcccag actagcgtat cgcaatattc agggcctttc gatacctttg       840
     caaattatac taggaacaat cttggcaata gtagactacc aaagcctaat ttggctacaa       900
     tgggcgtggt tggacagcat tttcctccat atgcttcctc tcaaattcct caagttagcg       960
     atatgtttga aaactgcaat accaaatcgg cggttgccga aacaaaggtt actttttccg      1020
     ggtatattcc tcagttggaa cccggtaaac ttcgaaactt gtacggtcct cactgtgaaa      1080
     gtgtgctaaa taatcagaca ataacagtca atcaaccagt tccgcgaagt acgatcgttc      1140
     ctccgttcgt tggcgtccaa acagcggttc cgttagtgcc accaagtgtt acagtgccaa      1200
     atgtgtttgc gacggtttca tcgtcatctg cagccgcttg tcatccaagc tttgaacaac      1260
     gagcatcaat gaccaacgca gcagaaccat tccttggggc aaattcaacc gagttggatc      1320
     aaggtgtgca acaatttaat ggatcgcgaa tgggagtacc ggatcaactt gtgcctagta      1380
     gtgcgcagtt agcggcaaga caagtaatgc cacgcgagtt acctagcttt tccggggacc      1440
     cggaagactg gccattattt gctagctcgt tctacaactc tacggcagcg tgtgggttca      1500
     cggacgcgga aaacctagct agactccaga agtgtcttaa agggcatgct cttgattcag      1560
     tgaaaagccg tctgttaatg cctcaatccg tgcctcatgt gatggaaact ttacgcaagc      1620
     tatatggaag gccggaggtt cttatccata ctctcctacg aaggcttcgc atcgtcccac      1680
     caccgagaac ggagaatctg cagtcggtca tcacgtttgg actggctgta cggaacttag      1740
     ttgatcatat gttcgtggct caactgatgg atcatcttcg caatcccatg ctgcttcacg      1800
     aactggttga gaaacttccg tcatcgatga aaatgcagtg gtcatggtac aaacgatcgc      1860
     aggtggaagt caacttagcc acttttgggg agttcatgac atagttagtc aataccgcgt      1920
     cggacgtaac gcttccagtg gatccttcaa gtcagcagtc gaagtcgtcg tgccagaccg      1980
     gaagagacaa gcagaagctg tttgtgcatg tagaggccag agatgagcac gcagcaccga      2040
     agaatactgc agacctttcc aaattttcaa ttaggcctga cggagtgaag aagtattgtt      2100
     gctactgctc aaacgaaaaa catgaagtag ctgaatgtcc acagtttaga gccctagatg      2160
     tagatggaag atggaaagcg attcgatcta acggtttatg cagaacctgc ttgataccgc      2220
     atagaaaatg gccttgtcgc tcagagaagg aatgtggagt cgacggttgt cggttgcgtc      2280
     atcacgcttt gctgcattcg cgggtcgtag ccgagtttgc aatcaatcga gttaaaggac      2340
     cggaaaatcc cgtagaaaat atctcccatc agaatcatca ttccacaatg aacttctgct      2400
     ttttccgcta cttacccgtg acgcttgagg tgaacggaaa acagatagaa acattcgcct      2460
     ttttggatga cggttgccaa acaacgctca tggatgcaga accggcggct gatttaaacg      2520
     ttgcagggcc agctgaatcc ctctggcttg gatggacggg aaacatttcg agagaggaaa      2580
     agggatcaca acgagtcaca gtgaatatct ctggtagcgg attgaaaagc cagtatcagc      2640
     tgaataacgt gcgtacagtt caaaagcttc aactgcaagg tcaaacgttc gagtacgagg      2700
     agttgcggaa aatgtatccc catctaagag gtcttccgtt gcgtagctac gtcgacgcag      2760
     ttcccaggtt gatcatcggc atagaacacg cacaacttct aacttcactg aaggtgcgag      2820
     agggcaaagc aaacgaacca gtggccgtaa agacaagact aggatggtgc gtttacggga      2880
     agcaagcagg agaatctcct gccgtcgaac gactgcatgt acatatggaa gggcgtcgct      2940
     tcgggaatcg tgaacttcac gatttaatga agcagtactt tgcagttgag gaagcagcag      3000
     tggcaatccc aattgagtcc gctgatgata gtcgtgcacg ccggattctt gaagagacta      3060
     cacgtagagt tgaagggagg tttgaaaccg gtttgctttg gaaatacgac cggccagttt      3120
     tcccagacag ctaccctcta gccctccgaa gactgctatc gttggagaag cgactcgaca      3180
     aagatcaagc cctaagaagt agagtaattt tgctcattcg tgattacgaa gcgaaagggt      3240
     acgcgcacaa aatcacacag gaggagttga catccagcga ttctgatcgc gtatggtact      3300
     tacctctagg agttgtgaga aacccgaaaa aaccggaaaa aatacgcctc atctgggacg      3360
     ctgcggcaaa ggtgcataga ctgtctctaa acgacatgct gctaaaaggg ccagatatga      3420
     tgacatctct attcgctgta ttgctgaggt tcaggcagag aacaatcgca atttgtgggg      3480
     acatccgtga aatgttccat caaattcgga tcattcccca ggataagcag tctcagagat      3540
     ttttgttccg tgagcaccaa gatgatctcc cgcaagttta cgtgatggat gtggcgacat      3600
     ttggtgcgac atgctctccc tgctcgtctc agttcgtgaa gaacaaaaac gcgagagagt      3660
     ttgagtccca gtttccgaag gctgcggaag caatcataaa cgcacactac gtagacgatt      3720
     accttgatag cgtagacact gtggaggagg cagtacaact ggtcaacgag gtcaagtatg      3780
     tgcacgcgct tggtgggttt gaaatccgga atttttcgtc gaattcgtcg gaagttcttc      3840
     gacgcctggg tgaagcagag agaacgtcga agtctctaga tctagatagc tcggaacatg      3900
     tcgagcgagt acttggtatg gtgtggaaac ctgccgaaga tgtcttcacc ttcgatgtga      3960
     gaatagaaga tgacctgaag gattttctgg aacagaacgt cgtaccaacc gaacgtcaag      4020
     tgttacgact agtaatgtca ctgttcgatc cctgtggatt aatcgcacac ttcattgtgc      4080
     atggaaaagt tttaatgcag catatctgga gaaccggaac agaatgggac gacgaaatac      4140
     cgatagagtt acactgcatg tggagagatt ggattcagtt actgaagcgg ttgatagaag      4200
     tccaagttcc acgttgcctt tttggagcag ccaacagtaa ggttcccgcc actatacaac      4260
     tgcacgtgtt cgtcgatgcg agcgaactag catatgcttg ttgtgcctat ttgaggatag      4320
     tgcaggccgg agttgtccat tgcggtatcg ttgcagcaaa aacgaaggtt gcccccttga      4380
     agccactttc aatacctcgc cttgagctgc aagcttgtgt gctcggatgt cgcttgatgg      4440
     aaactatttg cgtgtcactt aaattgacaa ttgaacggcg ttacctttgg gctgactccg      4500
     caacggcact tgcctggatt agatccgaca gcagacggtt tcatccgttt gtggcattcc      4560
     gagtcggcga aatactgaac acgtctaacg tagatgaatg gtttcacgtc ccatcaaaac      4620
     taaacgtggc cgatgatgcc acgaaatggg gaagtggtcc gagttttagt ccgagcggtc      4680
     gttggtatat tggtgaatcc ttcctgtttc agccaatgac agaatggcca caacaagtta      4740
     ggttgccgag tagtacggaa gaagaattgc gcgctgtttt tcacttccat caggaactgc      4800
     cagtaccact tatcgacgtg accagatttt ccaattggag tcgtttacta cgaacggcag      4860
     cgtacgtgta tcgggcggtg cagaagttca gcggtcgagg cactaacaga gaactgacaa      4920
     gcgatgagtt attgcaggcc gaaaactatc tatggcgtca agctcaaatg cacgcttatc      4980
     cagacgaata cagtgtgtta aagcacaaac ttcaaaatcc ggatggtaca ccaaagcaac      5040
     tagagaagag cagtccgttg tttcgggaat ctccgttcat ggatgacgca ggggtaataa      5100
     ggatgaacag cagaatttca agtgcccctt ctgcaccttt tgaaactaaa tacccagtta      5160
     tccttccaaa agatcacatc ttaacacgtt tactggtaga tagctatcac cgacgatttc      5220
     tgcacgggca aaatgaaact gttttcaacg aagttcgtct aaggttcaga attcaccagt      5280
     tacgtccggt catcaaaaga gttgccagag actgccaacg ctgcaaaatc ttaaaatcag      5340
     taccgcaggc accaatgatg gctccacttc cagcagttcg gcttactcct caagtccggg      5400
     cattcagtta cactggtgtt gattattttg gcccaatttt agtgaagcag gggcgcagtt      5460
     tggttaagcg ctgggtggcg ctgttcacgt gcctgacgat acgggcggtg cgtttagagg      5520
     tcgtccacag cttgtcaacg caatcctgcg tcatggccat acgacgcttc ataagtcgaa      5580
     gaggtgcacc cgcagccttt tattccgaca atgggacatg ttttaaaggg gccagcaata      5640
     ttctagcaga ccaactgcag acaattcatg aggactgtgc gttgaccttt acaaatgcta      5700
     gaactacttg gcacttcaac cccccatctg cgcctcatat gggcggatgt tgggagcgga      5760
     tggtccgctc catcaaagtg gccatggcgg ctttagcaga acatcctcgg cattcaagcg      5820
     atgaggtatt ggaaaccgtg atattagaag cggaagccat tgtcaactca cgcccgctga      5880
     cttatattcc gctagacaac gcagaagagc aagctcttac accgaaccat tttcttctct      5940
     acggtgagcg aggagttgtt caaccaagat cttcgtttat ggtggaaggt gagacattgc      6000
     gcgatagttg gaagcaggca caatacctca ctgatcaatt ttggaagcgg tgggtgcgag      6060
     agtatctgcc tacgttaacc agacgcacta agtggttcca acccaccaag cccttggaac      6120
     caggagatgt tgtgttcgtg gttgacgtca acaagcggaa tgggtggcta agaggacgaa      6180
     tcattcgggt gttcagcggc aaagacggcc aggtacggag agcagttgta caaaccagtg      6240
     agggagtttt gtcacgaccg gccgtcaagc tagatgttca cccaaacagg aagaagacgg      6300
     aagcggaagt tccccggaac tacacgggcg ggggaa                                6336
//
ID   BEL-261_AA-LTR repbase;    DNA;    INV; 636 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-261_AA_;
KW   BEL-261_AA-I; BEL-261_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-636
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2531-2531 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 636 BP; 213 A; 103 C; 135 G; 185 T; 0 other;
     tgtaaagaac caacagggca gtcgatgtgt ggtgagttcc gtatcacccg ttcctgtcaa        60
     tgcggatgac atgaatttgg cattggaccg cgtacgggag ggaacgaagg ttgattgaga       120
     gaacgaagga ggggtcaaaa tagaattcgt cattgtgttc acaaataggc atgaatgcta       180
     gttttcgctg tgcaaaccat cacaatttat cgaacattta tttggagaaa caagtagtaa       240
     tttcttgaat taaataggta aattgattat tctaatttgg aacttagtag ctaatttaaa       300
     cttattatag attctaaaag taatagtacg gagttgctga actactgaat tgctttgttc       360
     gcgaattaaa acctctgttc gtaagtcatg cattataccc taaaaatgta cgtaaatatt       420
     ataaactgaa atttgttaaa cctagataag cgattcctac aattagttca gaacggttcg       480
     cgaagtgttt cggggtagca taggaaggac acgaaatgta agtccaatgt aaggtaacac       540
     tgaattgaac tataatcaag cattaataca attacagctt gaagctgcat ttgctgctga       600
     aaagacgtgc gaccacttta actcctatcc gaaaca                                 636
//
ID   BEL-262_AA-I repbase;    DNA;    INV; 6627 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-262_AA_;
KW   BEL-262_AA-LTR; BEL-262_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6627
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6627
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2532-2532 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..6625
FT                 /product="BEL-262_AA-I_1p"
FT                 /translation="MPGSSRTTSKRRGVIRQLTDEESSVAARCPSCNRSDV
FT                 ADRWMVQCDLCERWFHFTCARVDESVRDRSFACVTCALQHGLESTRSTTSS
FT                 TNSARRRLELLRLEEEKELQEKLLVEQMEEEAALQKKVVEEERERRQRIMQ
FT                 EKLEIAKRYISKKYEVLQEEEKSQAGVSRKSRSSTRSKFGEVENWVNNNDL
FT                 AMAAGFGTNQVPVGATPITEVGPQATGRSSGGGTFPIVSTQTDILNKSVAA
FT                 TDPYDRNNIASWGILVPHAVQSTVDSVPNLPSSQPTTSSTPLQERQVPRTD
FT                 DVAANISPPTTQQARPAVWDMNISPSHIGERSRVDLEREIQELQQQLANLK
FT                 RSSSSQRQQYPVPDSSNVSAAVTSLSNTAGTGMSNLHGPFRVDQEIGRQAA
FT                 IPLSVRTQASVSFATQCTTQNTVPSSRLFPPWNPTVSSNYFPSNQPGVPNS
FT                 FSNDPFVFAGNIPQQYEPRISHPINRQSSVHVPSYPFARTGRSVPNLINQQ
FT                 SAFPDDVPFRPFVASVPSVPNPIVTPLVSQGATPNPAANCGPSSQQIAARH
FT                 VVPKELPEFTGDPIDWPLFVSSYNNSTRMCGYTNDENLMRLQRCLKGNAKE
FT                 AVRGHLYHPSSVPQVMATLETLYGRPELIVKCLMNKVYSTPAPKADKLESL
FT                 ISFGLVVQNLCSQLQSMGMDAHLSNPSLLQELVDKLPANIKLDWAMYQRSV
FT                 PVVDLRSFGSYMATIVSAASNVTLYAEPMRKPEKPKGKEKGFVNTHTTDSK
FT                 AKSICEGKEEIRVNASQQPKPCLLCKRDGHKVKECNNFKQLTLENRWKTVQ
FT                 QFNLCRRCLIPHGKWPCKATVCGVGSCEARHHKLLHPGDPQSSTTGTTESS
FT                 RSQPASSATVNVHRQLPCPVLFRILPVTLYGKSASVNTLAFLDDGSSHTLI
FT                 EKDLADELGVEGEVEPLCLQWTGNIKRTERDSQNVKLEVSAVGKDRKHTLD
FT                 YVRTVDNLDLPPQSLHYDELALKFHYLKGLPVDSYTSAAPRILIGADNAKL
FT                 LLTLKKREGRYCEPVAAKTRLGWTIYGKAEGLIDSPEYRHLHICVRSSDQQ
FT                 LHDTVKNFFSMESVGVALVPQVEADEDRRAREILEKTTIRTAAGRFQTGLL
FT                 WKFDCIEFPENRFMAEKRLACLERSLSKKPELYANVRQQIVDYQAKGYAHK
FT                 LSDEESTSSDPNRVWYLPLGVVQNPNKPGKVRVVWDAAAKTSGVSLNSMLL
FT                 AGPDLLTSLPSVLFRFRQRQIAITGDIKEMFHQIIIRPEDRQAQRFLWRNN
FT                 PNEPVQEYVMDVATFGSTCSPCSAQYVKNKNAEEWKHVYPEAATAIVENTY
FT                 VDDYANSSDTVEEAVRVALEVREIHASAGFEIRNWLSNSQQVLRRVGEESS
FT                 KTTKSFTAVKATDSERVLGMMWLPESDELTFCFNFRPDIQQLLVGGAIPTK
FT                 REVLRVVMSIFDPLGLVAAFVVHGKCLIQDIWRAGVDWDDQIPAELANQWW
FT                 RWVEVLRNLNIVKIPRCYFPGYDSHSLRSIELHVFVDASETAYACAAYFRI
FT                 VDRGQVRCTLVSAKTKVAPLKPMSVPRLELQAAMIGVRLMKSVQENHTLPI
FT                 TRRLIWGDSKTVQSWIRSDQRKYRQFVAYRVSEILSETSLQEWRWVPTRFN
FT                 VADEATKWGKGPSFQADSRWFVGPEFLYENESEWPVQEFQPAGTPEELRSV
FT                 HTHHRAAPESLIQYHRFSKYQRLLRTVGYILRFINRCRGRGDAESCDASVL
FT                 SREELGNAEVVLWKLVQAEEYPGELSTVRKNQQCPLEQAKRLDKNSPLRKL
FT                 SVFLDEHGVLRIEGRIGSAKLVPYGPKFPVILPKQHRFTELLVEHFHQRYA
FT                 HGYGETVANELRQIFHIPSLRTIVRRVARNCSWCVVYRAVPKAPRMAPLPA
FT                 VRLTPYVRPFTFIGIDYCGPFLIRIGRSSVKRWVVLITCLTIRAVHLEVAA
FT                 SLSTESCKMAIRRFIARRGAPQEIYSDQGTNFIGASRELRAEVTAVNRELA
FT                 GTFTNHDTQWRFNPPAAPHMGGVWERLVRTVKTSLQTLSTSRTPDEETFQT
FT                 LLIEIEGIINSRPLTFVPLDTEEDEALTPNHFLMLSSNGIVQPLQQPVKDS
FT                 GRTLRANWDLIRSLLDEFWVKWIKGYLPIICRRTKWFDDIKPIAVGDLVFV
FT                 VDEGMRNSWTRGKVVKAIPGNDGRVRRVDVQTVNGVLQRPVTKVAVLDVAV
FT                 GGIAEETKQQYGSG"
XX
SQ   Sequence 6627 BP; 1817 A; 1558 C; 1723 G; 1529 T; 0 other;
     aactttaagg tatttaacct cgaagtggac acatccagcc ttgaagatgc cgggctcgag        60
     caggacgaca agtaaacgtc gcggtgtcat ccgacagctt acggacgaag aaagttccgt       120
     tgcggcccgt tgtccctcct gcaatcgctc cgatgtggcg gacagatgga tggtccagtg       180
     cgacctgtgt gagaggtggt ttcacttcac ctgcgccagg gttgacgaaa gtgtcagaga       240
     tcgcagcttt gcgtgtgtca cctgcgcgct acagcacgga ctggaatcca ccagatcaac       300
     tacgtccagc actaattcgg caagaaggcg actcgagcta cttcggctag aggaagaaaa       360
     agaactgcag gagaaactac ttgtggagca aatggaggag gaagctgctc tacagaagaa       420
     ggtagtagaa gaggaaaggg agcgaaggca gcgaatcatg caggagaagt tggagatcgc       480
     gaagcggtac attagcaaga aatacgaagt gctgcaggaa gaagagaaat cgcaagccgg       540
     tgtgagccgg aaaagtcgtt ctagcacacg tagcaaattc ggtgaggttg agaactgggt       600
     gaacaataac gatttggcca tggcagctgg attcgggaca aaccaagtcc ccgtcggtgc       660
     cacgccaata accgaagttg gtcctcaagc aactggtcga agctcgggtg gcggtacgtt       720
     tccgattgtt tctacccaga ctgacattct caacaagtcc gtagcagcta ctgatccgta       780
     cgaccgtaat aatatcgctt cgtggggaat actcgtgcct cacgccgtgc aaagtaccgt       840
     ggattcggtt ccgaatcttc cttcgtcaca accaacaacg tctagcactc cgctgcaaga       900
     aagacaagtg cctcgcactg acgacgtagc agcaaacata tctcccccca cgacacagca       960
     agctagacca gcggtttggg atatgaacat atctccatcc cacatcggcg aaagatctag      1020
     ggtggatcta gagagagaga ttcaggaact tcaacaacag ttggccaacc tcaagcgaag      1080
     ttcatccagt cagcgacagc aatacccagt tcccgacagc agcaacgttt cggcagcagt      1140
     aactagccta agtaatacgg caggtacagg tatgtcaaac ttgcatggcc cgtttcgagt      1200
     agatcaggaa ataggtagac aggcggccat cccgctctcg gttaggacac aggctagtgt      1260
     tagtttcgct acacagtgta ccacacagaa caccgttcca agttctagat tatttcctcc      1320
     ttggaatccg acggtttcgt caaactactt cccatctaac cagccaggag ttcccaactc      1380
     gtttagtaac gatcctttcg ttttcgctgg aaatatacca cagcaatacg aaccgagaat      1440
     ttcccatcca atcaatcgtc agtcttcggt tcatgtgcct tcctacccgt tcgctaggac      1500
     cggtagaagt gttccgaatc tgattaatca gcaatccgcc ttccctgatg atgttccctt      1560
     tcgcccgttt gtcgcgagtg taccgagtgt tccgaaccca atagttacgc cgttagtgtc      1620
     acaaggagcg acccctaatc cagcagcaaa ttgtggaccg agttcgcagc agattgccgc      1680
     gagacatgtt gtgcctaagg agctaccgga attcaccggt gatcccatag actggccatt      1740
     gttcgtgagc agctataaca actcaacgcg tatgtgtggg tataccaacg acgaaaacct      1800
     catgcggcta caacgctgcc tgaaaggaaa tgcgaaggag gcagttcggg gacatctcta      1860
     ccatccgtca tccgtaccgc aggtgatggc caccttggag acactctacg gacgtccgga      1920
     acttatagtg aagtgtttga tgaacaaggt gtattccact ccggcgccga aagcagataa      1980
     actggaaagt ctcatcagtt ttgggctcgt ggtgcagaac ttgtgcagtc aactacagtc      2040
     gatgggtatg gatgctcatt tgtctaatcc ctctctactc caagagttgg tggacaaatt      2100
     gccagccaac attaagctgg actgggctat gtatcagcga agtgtgcctg tggtggattt      2160
     acgtagcttt ggctcttaca tggcaacaat tgtgtcggca gccagcaacg tcaccctcta      2220
     cgcagaaccc atgagaaaac cagagaaacc caagggaaaa gaaaagggtt ttgttaatac      2280
     ccatacaacg gactccaaag cgaaatccat ctgcgaggga aaggaagaaa tacgtgtgaa      2340
     tgcaagccag cagccgaagc cgtgtctttt gtgtaaaagg gacggacata aagtgaagga      2400
     gtgcaacaat ttcaagcagt tgacgttgga aaatcgttgg aaaaccgttc aacagttcaa      2460
     cctctgtcgc cgatgcttga ttccacacgg caagtggcca tgcaaggcca cagtttgtgg      2520
     tgttggtagc tgcgaagcgc gtcatcacaa gttgttacac ccaggagatc ctcagtcgtc      2580
     gacaaccgga acaacagagt catcgagaag ccagcctgca tcgtcagcaa cagtgaatgt      2640
     ccaccgtcag cttccgtgtc cggtactctt ccgaatactt cccgtaactc tctatgggaa      2700
     aagtgcatca gttaacacgt tggcgtttct cgacgatggt tcttcgcaca cactcataga      2760
     aaaggacctg gctgatgagc tgggagttga aggcgaagtt gaacccctgt gcctacaatg      2820
     gaccggaaat atcaagcgaa ccgaaaggga ttcccagaac gtgaaacttg aagtctcggc      2880
     tgttggaaaa gatcggaagc acacgttgga ctatgtgcgt acggtcgaca acttagatct      2940
     tcccccacag tcgttacatt acgatgaatt ggcgcttaag tttcactatc tcaagggcct      3000
     tcctgtggac agttatacaa gtgctgcccc tcgtattttg attggcgccg acaacgcaaa      3060
     actcttgtta actttgaaga agcgggaagg aaggtattgt gagccagttg cagccaaaac      3120
     tagattaggc tggaccatct acggcaaggc agaaggcctc atcgattcgc ctgaatatcg      3180
     tcatctgcac atttgcgttc gttcgtcaga tcaacagctg cacgatacag tgaagaactt      3240
     tttttcgatg gaaagtgttg gtgtagcact tgttccacaa gttgaagccg acgaagatcg      3300
     tagagcacgt gaaattctgg agaagacaac cattcgtaca gcagctggcc gatttcaaac      3360
     cggtttattg tggaaatttg actgcatcga atttcccgaa aaccgattca tggctgagaa      3420
     gcggttggcg tgtttggagc gaagcctatc caagaaaccg gagttgtatg cgaacgtgcg      3480
     tcagcagatt gtcgactacc aagcgaaagg atatgcgcat aagctatccg atgaagaatc      3540
     aaccagtagt gatccaaata gggtttggta tttgccgtta ggggtcgtgc agaatccaaa      3600
     caaacctgga aaagttcggg tagtatggga tgccgccgca aaaactagtg gggtttcgct      3660
     taattctatg ctgttggcag gcccagatct cctcacctcg cttccatcag tgctgtttcg      3720
     ttttcgccaa cgacagatcg ccatcaccgg cgacataaaa gaaatgttcc accagattat      3780
     cattcggccg gaagaccggc aagctcagcg ctttttgtgg cggaataatc ctaatgaacc      3840
     ggtgcaagaa tacgtgatgg acgtggcgac gtttgggtca acatgttcgc cttgctctgc      3900
     ccaatacgtc aagaacaaaa acgccgagga atggaagcac gtttaccccg aagcagcaac      3960
     agctattgta gagaacacct acgtagatga ttatgctaac agttcggata cggttgaaga      4020
     agcggttcga gtcgcactcg aggtacgaga gattcatgca agcgcgggat ttgaaattcg      4080
     aaactggctc tcaaattccc aacaagttct tcgacgggtc ggggaagaga gttcgaagac      4140
     tacaaaaagc ttcactgcgg tgaaagcaac cgactcagaa cgagttttgg gtatgatgtg      4200
     gcttccagaa agtgacgaac tcacgttctg cttcaacttt cggcccgaca ttcaacaact      4260
     gctggtagga ggagcaatcc caacgaaacg tgaagttctg agagttgtca tgagtatttt      4320
     tgatcccctc gggcttgtgg cggcgtttgt tgtccatggc aagtgcttga tccaggacat      4380
     ttggagagca ggtgtggatt gggatgacca gattccagcg gagttggcca atcaatggtg      4440
     gcgttgggta gaagttcttc gcaacctcaa tattgtgaag attcctcgct gttacttccc      4500
     gggatacgat tcccatagcc ttcgcagcat agaactacac gtttttgtcg acgcgagcga      4560
     gacagcgtac gcatgcgccg cttatttcag gattgtcgac cgtggacaag tacgatgtac      4620
     acttgtttcc gccaaaacca aagtagcccc tctcaaacca atgtcggttc ctcgattaga      4680
     gttacaggct gcaatgattg gagttcgatt gatgaaatca gtacaagaaa accacacatt      4740
     gccaataaca cgtcgtttga tttggggtga ctctaaaacg gtgcagtcgt ggattcgttc      4800
     agaccagcgt aaataccgac aatttgtggc gtacagagta agcgaaattc tgagcgaaac      4860
     aagtctacaa gagtggcgat gggttccaac aagattcaac gttgcggatg aggccacgaa      4920
     atggggcaaa ggacctagct ttcaagctga tagccgatgg tttgtaggtc ctgaattcct      4980
     atacgagaac gaatctgaat ggccagtcca agagtttcaa ccagcgggta ctccggaaga      5040
     attgcgatcg gttcacacgc atcatcgagc ggctccagaa tctttgatac aatatcatcg      5100
     tttctccaaa tatcaacgac tgctgagaac cgtgggttac attcttcgct tcatcaatcg      5160
     ttgtcgggga agaggtgatg ccgaaagctg tgatgcaagc gtattatcga gagaagaact      5220
     gggaaatgca gaagttgtac tctggaagtt ggtgcaagct gaagagtatc ctggagagct      5280
     gtccacagtg cgcaagaatc aacagtgtcc gttggagcaa gccaaacggt tggataagaa      5340
     cagcccactg cgtaagctgt cggtgtttct ggacgaacat ggagttctgc gaattgaagg      5400
     ccgaattgga tcagctaaat tagttccgta cggaccaaag tttccggtaa ttcttcctaa      5460
     acagcatcgt ttcaccgagt tactcgttga gcactttcat cagcgctacg cacatgggta      5520
     tggagaaacc gttgcaaacg aactccgaca aatcttccat attccaagtt taaggacaat      5580
     cgttcgaaga gtagccagaa attgttcatg gtgtgttgtg taccgtgcgg tccccaaggc      5640
     acctagaatg gcacctcttc cagctgtaag attgacccca tatgtccggc cattcacatt      5700
     tattggcatc gattactgtg ggccatttct tattcgtatt ggaagaagca gcgtcaaaag      5760
     atgggttgta ctgataacct gtctgacgat acgagccgtt catctggagg tagctgccag      5820
     tctgtctacc gagtcgtgca agatggcgat tagacgattt atagccagaa gaggtgcccc      5880
     acaggagatc tatagtgatc agggcacaaa tttcattgga gcaagcagag agttacgagc      5940
     ggaagttacg gcggtgaatc gtgaattggc tgggacattc accaaccatg acacccaatg      6000
     gcggttcaac cctcccgctg caccacacat gggcggcgtg tgggaacgcc tagtacgaac      6060
     tgtgaagact tcattacaaa cattatcgac cagcagaacg ccggacgaag aaaccttcca      6120
     gactcttctg atcgagatag aaggaatcat aaattccagg ccattgacgt ttgtgccact      6180
     ggatacggaa gaagatgaag cgcttacgcc caaccacttc ctgatgctta gctcaaacgg      6240
     tatagttcag ccgttacagc aacccgtcaa agacagtggg cgaacgcttc gagcgaactg      6300
     ggatctaatt cgttcattac tggatgagtt ttgggtcaag tggataaaag gatatctgcc      6360
     cataatctgt cgtcgtacta aatggttcga tgacatcaag cccattgcag ttggtgacct      6420
     agtgttcgtg gttgacgaag gtatgcgaaa cagctggaca cgtggaaagg tggtgaaggc      6480
     gattcctggc aacgatggca gagttagaag agtggatgtg cagacggtca atggagttct      6540
     tcaacgacca gttaccaaag tggcagtgct tgacgtggca gttggcggta tagctgaaga      6600
     aaccaaacag caatacgggt cggggaa                                          6627
//
ID   BEL-262_AA-LTR repbase;    DNA;    INV; 505 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-262_AA_;
KW   BEL-262_AA-LTR; BEL-262_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-505
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2533-2533 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 505 BP; 178 A; 90 C; 91 G; 138 T; 8 other;
     tgtggatgag tagacccact gtgcgcacta ccactacwtt gggggatacc ttggggctac        60
     cttgcwtacc ctaccgtgat mgcatagctg tcaccggtgg taamggsatc agaacagwaa       120
     gaccaacaga catcagagca atcgattagw ttaaaacgtk gttggattct taaattttgt       180
     aaactaaaac acatttaaaa cttaaattaa acttagtttc tatttgaatt gaaattgtaa       240
     gtaccatgaa ttacactgaa ctgaactaaa ataaattact aacgttaatt gttctacaca       300
     gaaatacata cattgttaaa gacagttgcg gacagtggac acacgaatta aaagagggac       360
     taaatacgta agtcaagaaa ctgtttaata actatttata aaactaattg tcaataaatt       420
     tctgcagctt aaagcattct ccaagcaaat aacggagtgc taaataggtg tccgaaaatc       480
     ccgtgtttgt tcacgcgtcg taaca                                             505
//
ID   BEL-263_AA-I repbase;    DNA;    INV; 6256 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-263_AA_;
KW   BEL-263_AA-LTR; BEL-263_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6256
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2534-2534 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5244-5816] - Integrase core
CC   'CAAC' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3019..4029
FT                 /product="BEL-263_AA-I_3p"
FT                 /translation="MAIRRMKSLEKKFCTNPAMMQRISEQIHEFERKGYIR
FT                 KVSESEVATIDSRKTWFLPLGVVVNPKKPGKIRLIWDAAAKVDGVSFNSYL
FT                 LKGPDLLTPLPRVLSGFRLFPVAVSGDIREMFLQIKLQKGDRNTQMFVFRH
FT                 NPAEPVQIYAIEVTMFGSTCSPSSAQFVKNVNAEQYALHYPRAAAAIKEHH
FT                 YVDDYLDSFRTIEEAIQVVNDVKLVHAKGGFEIRNFLSNENEVLKQTGDGE
FT                 RSSSKDFALTRAESVESVLGLQWIPDDDVFTYTFAMRGDLQPILHEDHVPT
FT                 KREVLKVVMSLFDPLGFVSFFLVHGKVLMQDIWASGINWDEHISE"
FT   CDS           4482..6158
FT                 /product="BEL-263_AA-I_4p"
FT                 /translation="MNTADLATKWKSGPDFNYGNPWFNGPSFLYQSQEFWP
FT                 QQAHVTTTCEELRPSHSHAMVLPLIDASRFSRWSRLQRSMAFVFRFIDNLR
FT                 RKRNGSALRMGVFNRDELSRAEVALWKIAQAETYPEEIAVLLETQGSSDGR
FT                 HRRVAKSSPIYKNQPYLDEMGVIRQLGRIGAATFASEEAKYPAILPRQHRV
FT                 TYLITDWYHRRFRHANRETVTNEMRQRFEIAKLRSLVSKVARNCMMCRIKQ
FT                 ALPSAPTMAPLPAARLQPFVRPFTFVGVDYFGPILVKVGRSCVKRWVALFT
FT                 CLTVRAVHLEVVHSLSTESCIMAVRRFIARRGFPAEFYSDNGTCFQGASKE
FT                 LRREMENRNKSLATAFTTAKTRWCFNPPSAPHMGGVWERLVRSVKVAIGTI
FT                 ADASRKPDDEVFETILLEAEALINTRPLTYIPLESADEEALTPNHFLLGTS
FT                 NGDKLPPTEPVDSSVILRSSWRLAQAITQRFWARWVKEYLPVITRRSKWFK
FT                 DVQDIKVGDLVLVVGGTSKDQWTRGRVEAVIPGRDGRVRQALVRTASGIHR
FT                 RPAVKLAVLDVL"
FT   CDS           join(373..1713,1717..2823)
FT                 /product="BEL-263_AA-I_1p"
FT                 /translation="MKRIELDEEEALKKLEHEEAQRQLEEKKKQLEEQKKL
FT                 AEEETVLRQRQLEAEKMRLRKQQSIRRESLEKKNEIVLQISERGSVVESTT
FT                 NSREKVSNWLSSNISLGTTGGKTLGNHIRPQIEMVPPAPKKVPTLIIEAPI
FT                 GCTSKPKLPAVESHNRDVTNLQRSSQAPPYGLTTASNRIVSGREIRSATIR
FT                 EPFQQYVSSSRPVAALPATIYSYPPGNYSREPHDNGSVHAWRSCHQGPSWS
FT                 TPNRYGNLPNLQMEADHPMEPHFVQRNSHQERVHSGHGLDIESSPIHASLV
FT                 ANPTRQSEIPGVLSSQQIAARQVVGKDLPHFSGNPADWPLFISSFEQSTLS
FT                 CGYSDAENLVRLQRCLTGHAREAVRSRLLLPANVPQVINTLRTIYGRPELL
FT                 VRVLHEKIRRTPGPRYDRPESILEFGLAVQNFVDHLQAAHQEEHLANPMLM
FT                 QEVEKLPGPMRMDWATLKGRQLRPTVSTFGDFMAKLVSAASEVSFELPGLQ
FT                 KGAHTEGQQRSREKARIQTHSSENLPSLKSAPPIRSNRKPSKPCAACEREG
FT                 HRVTECSNFKQLNLEERLKKVQDKGLCRTCLNNHGKWPCKSWQGCAIEGCR
FT                 LKHHTLLHAPSAPVTSTHSVNVSAGELASDDGYTLFRVLPVVLYGNGKSMT
FT                 VFAFIDEGSQITMLEEKIAEELGVFGPKKPLTLQWTGNVHRNELRSEEISL
FT                 EITGKHSKTRYELRNARTVSCLLLPAQRLNYREMVARFPHLRGLPIEDYDL
FT                 VQPKLLIGLDNLRLGVPLRIREGGSFDPIAAKCRLGWCVYGRASTATIPRV
FT                 NVNFHTAAATTNDD"
XX
SQ   Sequence 6256 BP; 1721 A; 1521 C; 1573 G; 1436 T; 5 other;
     caacaatctt aaaganattt tgtacgtggg ttgaaacgat ggaggtacat cacaaccgat        60
     cagaatttac gtgcaaatta tgccgaaagc cggattcgtc agaagcacac atgatcgcct       120
     gtgatcaatg ccgccggagt aactgaatcc ctgcggagcc gtccgttcgt ctgcccgcag       180
     tgcagaagtc aggatgcagc aggctccact atctccaccc gtctacggtc tcacacgaaa       240
     cgggcatcgt ccggtaaggt atcggtaggc aaaaccactt cgtatgtagc aagtaagacg       300
     tcttcgattg cctcaagcag tcgatcgtcc cttgtaaaag cgcagctaga atcgatcgaa       360
     gaggnagcca aaatgaaacg aatcgagctt gatgaagaag aagcactcaa gaaattggag       420
     catgaggaag cgcaacgtca gctggaagaa aagaagaagc agctcgaaga gcagaagaaa       480
     cttgcagagg aagaaacggt tttgcgacaa cggcaattgg aagcggaaaa gatgcgtcta       540
     cggaagcaac aatcgatccg aagagagtcg cttgagaaga aaaacgaaat tgtgctacag       600
     atttccgaac gcggcagtgt ggttgaatct acaacgaact cccgagaaaa ggtttcaaat       660
     tggctgtcga gcaacatatc cctagggacg accggtggga aaactttggg gaatcatatc       720
     agacctcaaa ttgaaatggt tcctccggcc cctaaaaaag ttccgacact gataattgaa       780
     gcaccaatcg gctgtacaag taaaccaaaa ctaccggcag tggagtccca caatcgagat       840
     gtaacgaatc tccaacgttc gtcccaagcg cctccctatg gtctaactac cgcttcaaat       900
     cgaatagtca gcggtcggga aattcgttca gccaccatca gggagccttt ccagcagtat       960
     gtgtcatctt cgaggccagt cgcagcattg cccgctacaa tatattccta tccaccaggg      1020
     aattattcac gcgaaccaca tgataatgga agtgttcacg cttggcgatc gtgtcatcaa      1080
     gggccgtctt ggagtactcc caatcggtac ggcaatctac ccaatctcca aatggaggca      1140
     gatcatccaa tggaaccgca ctttgttcaa cgcaattcgc atcaggaacg tgttcactct      1200
     gggcacggtc tggatataga atcttcgccg atacatgcat cgttagttgc gaatcccaca      1260
     agacagagcg agatacccgg agttctcagc tcgcaacaaa tagctgcgag acaagttgtc      1320
     ggcaaggatc ttccacactt cagtgggaat ccagccgact ggccactgtt tataagtagc      1380
     tttgagcagt ctacgctttc atgtggatac tcagatgcgg agaatcttgt gcgtcttcaa      1440
     cggtgtctca caggacatgc ccgagaggca gtgcgaagcc gactcctact tcctgccaat      1500
     gtgccacagg taatcaacac actccgcaca atctacggtc gtccagagct gttggttcga      1560
     gtattgcacg agaagatacg acggactcca ggcccgagat acgatcgtcc cgaatcaatc      1620
     ttagaattcg ggttggccgt acagaacttc gtcgaccacc tacaagcagc tcatcaagag      1680
     gagcatcttg cgaaccctat gctcatgcaa gagtaggtcg aaaagcttcc ggggcccatg      1740
     agaatggatt gggcgacctt aaaaggtaga caattacggc ctaccgtttc tacgttcggc      1800
     gatttcatgg caaagctcgt tagtgcagca agtgaagtga gtttcgaatt gccgggccta      1860
     caaaaaggag cgcacaccga aggccagcag cgatcgaggg aaaaagcaag gatacagacg      1920
     cactctagtg agaatcttcc gtcgctcaaa tcagcgccac cgatacgaag caatcgcaaa      1980
     ccatctaagc catgcgcagc ttgcgagcgc gagggacatc gagtgaccga atgttccaac      2040
     ttcaagcagc tcaacttaga ggaacgtttg aagaaagtgc aggataaggg tctctgtcga      2100
     acatgcttaa acaaccacgg caaatggcca tgcaaatcat ggcaaggatg tgccattgaa      2160
     ggttgtcgac tcaaacatca tacccttctt cacgcgcctt ccgctccagt cacatccacc      2220
     cactctgtta atgtatcagc aggcgaattg gcatcggatg atggctatac gctttttcgt      2280
     gtgctgcctg ttgttctcta tgggaatggt aaaagtatga cggttttcgc atttatcgac      2340
     gaaggctccc aaataacaat gctggaagag aagattgctg aagagctagg cgtctttggt      2400
     cctaaaaagc cgctaacttt gcagtggacc gggaacgtac accgtaatga actaagatca      2460
     gaagagatta gtttggaaat aacagggaaa catagtaaaa ctcgctacga gctccgcaat      2520
     gcgcgcacag tcagctgttt actactacca gcccagcggc tgaactacag ggaaatggta      2580
     gcacgtttcc cgcacttgag aggtctaccg attgaggatt atgatctagt gcaaccaaaa      2640
     ttgcttatcg gcctagacaa tcttcgtctc ggtgttccat tgaggattcg cgaaggtggc      2700
     tcattcgacc ccatagccgc caaatgccgg cttggatggt gtgtttatgg tcgggcttct      2760
     acagctacga ttccaagggt gaacgtcaac tttcacaccg ctgcagcaac gactaatgac      2820
     gacntgctaa atgcgcagtt gcgcgatttc ttcaccttag acaacctagg ggctactgct      2880
     ccgaatgaga agcttgaatc aaacgaagac aggagagcga ggcaactact tgctgagaca      2940
     acccggcgta caaggactgg gtttgaaaca ggtctcctgt ggagggttga agatccgttg      3000
     ttcccagata cgtaccccat ggcgattcga agaatgaagt cactagagaa gaagttctgt      3060
     acaaatccag cgatgatgca acgaatcagc gaacaaatcc acgagtttga acgaaaaggg      3120
     tacattcgta aggtcagcga atctgaggta gctacaatcg actcacggaa gacttggttc      3180
     cttcccttag gagtggtcgt caaccctaaa aaaccaggaa aaatacgact gatttgggac      3240
     gctgcggcca aagtagacgg agtttcgttc aattcttatt tattgaaggg tccggactta      3300
     cttactcctt tgccgagagt gctgagtggc tttcgtttat ttccggtggc tgtatcagga      3360
     gacatcagag agatgttttt gcagatcaag ttgcaaaaag gtgatagaaa cactcaaatg      3420
     tttgtgttcc gtcacaatcc cgccgaacca gtgcagatct acgcaattga ggtcacaatg      3480
     ttcggttcta cctgctcacc ttcctccgct caatttgtta agaatgtaaa tgccgaacaa      3540
     tatgctcttc attaccctcg ggcagctgcc gcaatcaagg agcaccatta tgttgacgac      3600
     tacctggaca gctttaggac aatcgaagag gcaatacagg tggtgaatga cgtgaagttg      3660
     gtgcacgcaa aaggaggttt cgaaattcga aactttctgt cgaacgaaaa tgaagtttta      3720
     aagcaaactg gagacggcga gcgaagctcg tccaaagatt ttgctcttac ccgtgctgaa      3780
     tcagtagaat cagttctggg cctacaatgg atcccagacg acgatgtctt cacatacacg      3840
     tttgccatgc gcggtgactt acagcctatt ttgcacgaag accatgtccc aacgaagcgc      3900
     gaagtcttga aagtggtcat gagtctcttc gaccctttgg gattcgtctc attctttttg      3960
     gtacacggca aagtgctaat gcaagacatc tgggcctcgg gaatcaattg ggatgagcat      4020
     atcagcgagc anatccacgt ccgttggcga caatggatta cttatttccc ccgactggac      4080
     accttgcgaa tacctcgctg ttatttcagt tctccgttcc ctaaaaactt cggccgactg      4140
     gagcttcatg tgtttgttga tgccagcgac tctgcttacg cctgcgtagc ttactatcgg      4200
     ctggaaacgg agaatggcgt ccaagtatca ctaatctgct ccaaatccaa agtagcaccg      4260
     ctcaaagtgc tatctgtccc ccgattggag ttgaaggcgg cggttctcgg agttcggata      4320
     atagaatcca tcgaaggtta ccacacttat gctattagcc gtcgatttct gtggagtgga      4380
     ttcgatcaga gcatcgccgg tacaataagt tcgtggcagt ccgtatcggc gaaatcctca      4440
     ccgtaaccga cgtaaaggaa tggagatggg taccatccgg gatgaatact gctgaccttg      4500
     ctaccaagtg gaaaagtggg ccagatttca actacggtaa tccttggttt aacgggccgt      4560
     cgtttctgta ccaatcgcaa gaattttggc ctcaacaagc acatgtcaca acaacgtgcg      4620
     aagaacttcg tccaagtcac tctcatgcta tggttttgcc gttgattgat gcgtcgcgtt      4680
     tcagtcggtg gtcccgtctt caacggtcga tggcgttcgt gttccgattc atcgataatt      4740
     tacgtcgcaa gcggaatggt tcagctctac ggatgggtgt attcaaccga gacgagctaa      4800
     gtcgagcgga agtggccctc tggaagatag cacaggccga aacttatcct gaggaaatcg      4860
     ctgttctgtt ggaaactcaa gggagctctg atggtcgtca tcgtcgtgtc gctaaatcta      4920
     gtccgatata caaaaaccag ccttaccttg acgaaatggg tgtaatacga caactcggac      4980
     gaatcggtgc cgcaacattt gcatccgaag aagcaaaata tcccgcaatc ctgccgcgac      5040
     aacaccgagt aacctacctg atcacggact ggtaccaccg tcgtttccgc catgccaatc      5100
     gagaaacggt caccaatgaa atgcggcaac gctttgaaat tgccaaacta cgttctctgg      5160
     tgtcaaaggt tgcgaggaac tgcatgatgt gtcgaataaa gcaagctcta ccaagtgctc      5220
     caacaatggc gccactacct gcagcccgac tacagccttt cgtccgacca tttacatttg      5280
     ttggagtgga ctacttcgga ccaatattgg ttaaagtggg aaggagctgc gtaaaacgat      5340
     gggtagcctt gtttacttgt ctaaccgttc gcgcggttca tctggaggta gtccacagcc      5400
     tgtccaccga gtcctgcatt atggcggtgc gacggttcat agcacgccgt gggtttccgg      5460
     ctgagttcta ctcggacaat ggaacttgtt tccaaggtgc gagtaaggaa ttgagaaggg      5520
     aaatggaaaa tcgcaacaag tctctagcta cagcgttcac gactgctaaa acacgctggt      5580
     gcttcaatcc accgtctgcc ccacacatgg gaggtgtgtg ggaacgcctc gtgcgctccg      5640
     ttaaggtagc cataggtacc atagcagacg cctcacgtaa accggacgac gaagtcttcg      5700
     agacgatttt actcgaggcc gaagctttaa taaacactcg accacttacg tacattccac      5760
     ttgaatcagc agacgaagaa gccctaacac ccaaccattt tctcttggga acttcaaacg      5820
     gagataagtt accaccaacc gaacctgtcg attcatcagt gatactgcga agtagctgga      5880
     gactggcaca ggccattaca caacgatttt gggcacgctg ggtgaaagaa tatttgccag      5940
     tgatcacgcg taggtccaag tggttcaaag atgttcaaga tataaaggtt ggagatttgg      6000
     tgttggtagt aggtgggaca tcgaaggatc agtggactcg aggacgagtg gaagcggtga      6060
     tccctgggcg cgatggaaga gtccgtcagg ctctggtccg aacagcatct ggcattcatc      6120
     gacgaccagc agtaaagttg gcagtactcg acgttcttgn aaggagtgaa cctaagaagg      6180
     aggtcccaga tgaacaggaa gttactaagg tccacgggag gggggatgtc acgtcacccc      6240
     cctgcaacag ttcaac                                                      6256
//
ID   BEL-263_AA-LTR repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-263_AA_;
KW   BEL-263_AA-I; BEL-263_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-674
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2535-2535 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 674 BP; 241 A; 122 C; 119 G; 192 T; 0 other;
     tgtgggcgat gaatactgtg gacaccacgg cggtcgtctg tatcgaccaa tgcagtgacc        60
     gttggaggtc cgatgatagc taacgtaaag aagcatatgt atgatcaaaa caatgactaa       120
     tggatttagt gtacacaact gaagttcaca tgcaattctt atcctaccgt aaagttgatt       180
     aaaatactgg tgaattcaac ttaattaggc ttaatactac ttgaacttga actaattgtt       240
     tatcctatac attaaaagta aaagtgaatt gaaatatcaa aaattacgaa gcaaaatcag       300
     cgttcatata tcgatgctca aaggtaaaac gcaactttca attgattgca tgatacatgt       360
     aacctaaaac agaccctttc agttggacgg aaagacccgg gcgacagcgt agacacatag       420
     cacaaataag ccttaagtat tggaccgaac agtaagaaat tataccttat tttctaaaca       480
     tgcagtttgg taaaacttat aatgtcagtg cctgaaaagt tgagataaga tacctctcca       540
     acatagaagt tcaccaaaat ttgtaagaaa tttgttaccc tattatataa aatgctaata       600
     aacattcgtt ttagctttaa gctaaccatt cataaaaact ggtttgctat tcaggacttt       660
     ggacgacttc ccca                                                         674
//
ID   BEL-264_AA-I repbase;    DNA;    INV; 5901 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-264_AA_;
KW   BEL-264_AA-LTR; BEL-264_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5901
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2536-2536 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4964-5509] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..5848
FT                 /product="BEL-264_AA-I_1p"
FT                 /translation="MTDPNANLDFTETPCAACDDVSTENERMIGCDGCQQW
FT                 FHIRCVGISSDAELDKKWFCADDKCQQAKKKKKTSRAKKNGDESDRSSVKS
FT                 DAALNLEQKLKAMEESQKRMEQELEAEMILKKKENEIKRSVERKRMMLEKQ
FT                 MREEEEEEERLLQEEILRERKLQLERMRARQQMFELSMKSLDNEMAKLKSS
FT                 SEKHKMEKGSDAEQTVLGVNRTPLRNPEIGKLTEQNVKVLKTAQISGSDDD
FT                 SENDDDDEENDTDTDSEDENSGSGEEFNSSTIEIGKKAAQGKSKRNFDNSS
FT                 QQGLSQPRCGPTKLQLAARSGISKKLPTFSGKPEEWPLFFGTYQASNEACG
FT                 YTDVENLVRLQECLKGPALEMVRGQLLLPKSVPKVMIKLRQLYGRPEQLLQ
FT                 SHLEKVRRLEPPKAGKLASFIPFGTAVEQLCEHLEAAELKQHLVNPLLIQD
FT                 LVEKLPDNDKREWVRFKRGKKKVTLRTFTDFISEIVSEACEANVSFEYKPA
FT                 NKIIGEGRPSAGTSRSKGAMFNHSEIESHSSGPTGGDERKSLKPCRVCNRT
FT                 DHRVRYCQDFRNLTYPDRTKVVEQWKLCHVCLNEHGMAQCKFKLRCNVGEC
FT                 RQAHNSLLHPTDSVVGTSAHIRTKSVMMFRMIPVRLHCGGKSITVLAFLDE
FT                 GASVTLIERKLADRLGVVGVHEKLTIQWTADIERVERDATRTNVWVSAIGA
FT                 EEKMLLTTVHTVGKLMLPAQTLDARELSREFSHLHGLPISSYSGRPQMLIG
FT                 LNNLHSFAPLEAKIGTVSEPIAVRCQLGWTVYGPRKSSTAAKLTGFVNVHH
FT                 SVTNEDLHDLLKNHYAVEESVVAIHLESIEDQRANEILKRTTKRIGECFET
FT                 GLLWKTDNPSFPDSYPMALRRLRQLERKLEKNSSLQQNVCKQIVEYQEKGY
FT                 AHLATPEELATTDARKAWYLPLNVVVNPNKPGKIRLVWDAAATVQGVSLNS
FT                 QLLKGPDMLVPLVAVIVGFREHRVAIGGDLREMYHQIKIVEKDKQFQRFLF
FT                 RDDPKENPRVYVMDVATFGSTSSPCSAQYVKNCNAEEYAEQFPKAATAIIK
FT                 HHYVDDYFDSVDTIEEAISRAKEVKFVHQKGGFEIRNWVSNSVEVLHSLGA
FT                 QESISPVHFTEDKSTLQERVLGMFWNPLSDEFSFSTKHREQHLPYFSGEKR
FT                 PTKRAVLSCVMGFFDPLGLLAPFTVHGRIIVQHLWRSGCEWDETIDDACWE
FT                 MWKRWTDLLPEVENIRIPRCYLGGYSSLEVESVEAHIFTDASEHAYGCVAF
FT                 LRVVVGGTVLCSVAMSRSKVAPLKKQSVPRLELMAAVLGARMSRTMTDTHS
FT                 LKIDRSVLWTDSRTVWSWIRSDQHQYKQFVAFRIGEILELTRATDWRWVPT
FT                 KQNLADVLTKFQRGALNSDGEWFRGPSFLYESEDEWPTLNTPIEQTNEEAR
FT                 GFVSFHVVIDVDRCSRWTKVLRVTAYVIRFIDNCKRKATVQQLVTIPATRN
FT                 QQRLILAQLPTTQRPLEKEEFRKAEVILWKQAQYESFPDEMNILVKNLGKR
FT                 PGDKLETVKKTSCIYKLSPMLDSDGVLRLGGRMELSEEIPFDKKFPIILPR
FT                 KHPTTAKVIQFYHEKFGHANRETVTNELRQRFWIPNIRTAVRQAVNECVWC
FT                 KVHRCRAQSPMMAPLPVSRMAAYIRPFHSVGIDYLGPIEVTVGRRKEKRWV
FT                 AVFTCLAVRAVHLELVASLSTQSCLMAIRRFSCRRGVPSEIFSDNATCFKG
FT                 ANNEMQRIHCECADELVSATTAWHFNPPATPHMGGIWERMVRSVKESMKAL
FT                 DDGRTLSDEVLFTTIAEAEDMINARPLTYMSQEAAYEEAITPNHFLRGTVV
FT                 NADLIVDGTVDTAASLRDAYKRSQQLANQMWERWLKEYLPTINRRTKWFEE
FT                 KKQLQVNDLVFLADGKNRKNWSRGIVEEVLPGPDGRVRQAIIRTAHGVYRR
FT                 AVANVAVLEI"
XX
SQ   Sequence 5901 BP; 1773 A; 1235 C; 1571 G; 1321 T; 1 other;
     acctcaaaaa tatttgaacc aagctcggat taatctttga agcgccatga ccgatccaaa        60
     tgcaaatctc gacttcaccg aaaccccgtg cgcagcttgc gacgatgtgt ccactgaaaa       120
     cgagcggatg atcggatgtg atggatgtca acagtggttc cacatccgat gcgttggaat       180
     atcttccgac gctgaattgg ataaaaagtg gttctgcgcc gatgacaaat gtcagcaagc       240
     caagaagaag aaaaagacga gtcgtgccaa aaagaatggt gacgagtcgg accgttccag       300
     cgtcaaatcc gacgctgcgc tcaatctaga gcaaaagctc aaagcgatgg aggagagcca       360
     aaagcgaatg gagcaggagc tggaagcgga aatgatcttg aagaagaaag aaaatgaaat       420
     taagcggtca gtagaaagaa aacgaatgat gttagagaag cagatgcgtg aagaggaaga       480
     agaagaagaa aggctgttgc aagaagagat tctgcgagaa cgaaaattgc aattggaacg       540
     gatgagagcc cggcaacaga tgttcgaatt aagcatgaag agccttgata atgagatggc       600
     caaactaaaa agttcttcgg agaagcataa aatggaaaaa ggtagcgacg ctgagcaaac       660
     tgtactcgga gtgaatcgaa caccactgcg taatccggag atcggaaaac tgacagagca       720
     aaacgtgaag gtattgaaga ctgcacaaat cagtggatcc gatgatgact ccgaaaacga       780
     tgacgacgat gaagaaaacg ataccgatac tgactccgaa gacgaaaaca gtggatccgg       840
     cgaagaattc aatagttcga cgatcgaaat aggaaaaaag gctgcacaag gcaagagcaa       900
     gcgtaatttc gacaattcaa gtcaacaagg gctgagccag ccacgatgcg ggccgacaaa       960
     gcttcaattg gctgccagaa gcggtattag taagaagcta cccacattct ccggaaaacc      1020
     agaggaatgg ccactgtttt tcgggacata tcaagcatca aatgaagctt gcggctacac      1080
     cgatgtggag aacttggtgc ggctgcaaga atgcctgaag ggtccggcgc ttgagatggt      1140
     ccgtggccag ctgctcctcc cgaaatcagt tccaaaggtg atgataaagt tgcgccaatt      1200
     gtacggtcgg ccggaacagc tattgcaaag ccacctggag aaagtacgtc gactggaacc      1260
     accaaaggca ggaaaattag caagttttat accgttcggc acagcagtcg agcaactatg      1320
     cgaacatttg gaggctgccg agttaaagca gcacttagtg aatccgttgc tgatccaaga      1380
     cttagtagaa aaattgccgg acaacgataa gcgtgagtgg gtacgcttca agcgaggtaa      1440
     gaagaaggtg acacttcgga ctttcacgga cttcatatcg gagattgtgt cggaggcatg      1500
     tgaagcgaat gtgagttttg aatacaaacc ggcaaataag atcatcggtg aagggcgtcc      1560
     ctctgcagga accagcagat cgaaaggcgc aatgttcaac cacagtgaaa tagagagtca      1620
     ttcgagtgga cctactggtg gagatgaacg aaaaagcctg aagccatgca gagtctgtaa      1680
     tcgaactgat catcgtgtac gttattgtca agattttagg aatttgacat accctgatcg      1740
     tacaaaagtc gtggaacaat ggaagttgtg tcatgtgtgc ttgaacgaac atggcatggc      1800
     acaatgtaag tttaagttac gctgcaacgt cggagaatgc cggcaggcgc ataattctct      1860
     tctgcatccc acggacagcg tagtcggaac aagtgcacat attcgcacaa aaagcgtgat      1920
     gatgttccgg atgattccag tccgcctgca ctgcggagga aaatcgatca ccgtactagc      1980
     gtttctagat gaaggggcgt cggtgacgct tattgaacgg aagcttgcgg atcggttagg      2040
     agtagtcggt gtgcatgaaa aactcaccat ccagtggaca gctgacatcg agcgagttga      2100
     acgagatgca acgaggacaa atgtgtgggt gtcagccata ggagcggagg agaagatgct      2160
     gttgactacg gttcatacag ttggcaagct gatgttgcca gcgcaaacat tggatgccag      2220
     agaactaagt cgggaattca gtcatcttca tggactgccg atttcgtctt acagtggacg      2280
     acctcagatg ctcatcgggt tgaataattt gcactccttt gctccgcttg aagcaaagat      2340
     cggaactgtt tcagagccta ttgccgtgag atgtcaactc ggatggactg tatacggacc      2400
     gcgaaaatca tcaactgcgg ctaaattaac cggatttgtt aatgttcacc acagcgttac      2460
     taatgaggac ctccatgatc tcctgaaaaa ccactatgct gtagaagagt cagtggtggc      2520
     catacacctc gaatccatcg aagatcagcg agctaatgaa attttaaagc gtaccaccaa      2580
     gcgtatcgga gaatgtttcg agaccggtct actgtggaag accgacaatc catcgttccc      2640
     ggatagttat ccgatggctt tgcgtcgact aaggcaattg gaaagaaagc tggagaagaa      2700
     ttcgagtttg caacagaatg tctgcaaaca aatcgtcgag taccaggaga aaggatatgc      2760
     ccatcttgcg actccggagg aactcgctac tactgatgct aggaaagcgt ggtatcttcc      2820
     actgaatgta gtggtgaatc caaacaaacc cggaaagata cgtctcgtgt gggacgctgc      2880
     agctacggtc caaggcgtat ctctcaacag tcagctgttg aaaggacctg atatgttagt      2940
     tccactggta gccgttatag tcggatttcg ggagcatcga gttgctatag gtggagatct      3000
     gcgagagatg tatcatcaaa taaaaattgt tgagaaggat aaacagttcc agcgctttct      3060
     gttccgagac gatcccaaag aaaatcctcg cgtttatgtc atggacgtcg ccacatttgg      3120
     atcaacgagt tctccttgtt cagcgcagta cgtgaagaac tgcaatgccg aagaatacgc      3180
     tgagcagttt ccaaaagcag caacagcaat cattaagcac cactacgtag atgactattt      3240
     cgacagcgtc gataccatcg aggaagctat cagtcgtgcg aaagaagtga agttcgttca      3300
     tcaaaagggc ggtttcgaaa taaggaattg ggtctccaat tcggtggaag tgctccatag      3360
     tctgggagca caggaatcaa tctcaccagt tcatttcacc gaagataaaa gtacgttgca      3420
     agagcgcgta ctcgggatgt tttggaaccc actaagcgac gaattttcgt tttctaccaa      3480
     acaccgagaa caacatctac cgtacttcag cggtgaaaag cgtccaacga agcgtgctgt      3540
     gctaagctgt gtcatggggt tttttgatcc cctgggttta ttagctccat tcacggttca      3600
     cggaaggatc atcgtacagc atttatggcg tagcggatgc gaatgggatg aaaccatcga      3660
     cgatgcttgt tgggagatgt ggaagcgttg gactgatctt ctgccggaag tggaaaatat      3720
     tcgtataccg aggtgctacc ttggaggtta ttcatctttg gaggttgaat cggttgaagc      3780
     acacatcttt actgatgcca gcgaacacgc gtacggatgt gtcgccttcc tgagagtggt      3840
     tgtcggtgga actgttctgt gttcagtggc catgtcccgg tcgaaagtag ctccgttgaa      3900
     gaaacagtcg gttcctcgtt tagagttaat ggcagccgta cttggtgctc ggatgagtcg      3960
     nacaatgacc gatacgcact cgctaaaaat cgatcgttct gtgctatgga cagattctcg      4020
     aacagtgtgg agctggatcc gatctgatca acaccaatac aaacagtttg tagcgttcag      4080
     gattggagaa atactagagc taacacgagc gacggattgg agatgggtac caactaagca      4140
     aaacctggca gacgttctaa caaagtttca acgaggagca cttaacagtg acggggagtg      4200
     gttcagaggt ccatcgttcc tttatgaatc agaagacgaa tggcctaccc taaatacgcc      4260
     aatagagcaa acaaacgaag aagccagggg tttcgtatcc tttcatgttg tcatcgatgt      4320
     cgatcgatgt tctcgttgga caaaagttct gagagtaaca gcgtacgtga tcagattcat      4380
     cgataattgt aaacgtaaag caacagtcca gcaattagtg acaataccag ctacgaggaa      4440
     tcaacaacgc ctgatactcg cacagctacc gacaactcaa cgtcctctag aaaaagaaga      4500
     gtttcgtaag gccgaagtta tactatggaa acaagcgcaa tacgaaagtt tccccgacga      4560
     aatgaatatt ctagtgaaaa atcttggaaa gagaccagga gacaagttag aaacagtgaa      4620
     gaagacgagc tgtatataca agctttcccc aatgttggat agcgatggtg ttctacggct      4680
     gggtggtaga atggaattgt cagaggaaat accgtttgat aagaagtttc ctatcattct      4740
     tccacgcaaa catccaacga cagctaaagt aatccagttc taccatgaga agttcggtca      4800
     tgcaaaccga gagactgtaa cgaacgagct tcgccagaga ttctggattc cgaatatccg      4860
     caccgcagtt cgccaagcag ttaatgagtg tgtttggtgc aaagtgcatc gatgtcgtgc      4920
     gcaatcgccc atgatggctc ctcttccagt ttcacgaatg gcggcgtaca tccgaccttt      4980
     ccattcagta ggtatcgact atctgggacc aatagaagtt actgtcggac gcaggaagga      5040
     gaaaaggtgg gttgcggtgt tcacgtgcct tgctgttcga gccgtccatc ttgaactcgt      5100
     tgcgagcttg tcgactcaat cctgcctaat ggccattcga cgattcagct gccgacgagg      5160
     tgtgccgagt gaaatatttt cagacaacgc aacatgtttc aaaggggcta acaatgaaat      5220
     gcagagaatt cactgtgaat gcgcagatga attggtaagt gctacgacag cgtggcactt      5280
     caatccacca gctacgccgc atatgggcgg catttgggag cggatggtga ggtccgtaaa      5340
     ggagtcaatg aaggcgttag atgacgggag aactttgtca gatgaagtac tgttcacaac      5400
     cattgctgaa gcggaagata tgattaacgc tcgtccgtta acatacatgt cacaagaagc      5460
     ggcctacgaa gaagcaatca ctccaaacca cttccttcgt ggaacagtgg tcaatgccga      5520
     tttgatagta gacgggacgg tggatacggc agcatctttg cgggatgcct acaagcgttc      5580
     tcaacaacta gcaaaccaaa tgtgggagcg atggttgaag gagtatttgc cgacgattaa      5640
     cagacgtacc aagtggtttg aagaaaagaa gcagttacaa gtgaacgatc tagtgttttt      5700
     ggcggacggg aaaaatcgaa agaactggag cagaggaatc gtggaagaag tgttgcctgg      5760
     acccgatgga cgagttagac aggcgattat acgaacagct catggtgtat acaggcgtgc      5820
     ggtggcaaac gtagcggtgt tggaaatttg aaggtaaaac cagaagttcc gaggaactac      5880
     aggatgttac gggctggggc g                                                5901
//
ID   BEL-264_AA-LTR repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-264_AA_;
KW   BEL-264_AA-I; BEL-264_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-693
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2537-2537 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 693 BP; 240 A; 91 C; 168 G; 193 T; 1 other;
     tgttaacacc gcgcgttgcc cagtgtagct gaccaatacc acaaaaagca gaaaggcgat        60
     ttgggcntac ctttctgtta ttagcgaatt gcatcgttcg ccttctaagg ctgaatgggg       120
     aaggagagat agtagtgata agaaaaagat ggattgaaga ctattgtaaa taagagtagg       180
     acaaacggcc attgggaaat acccgtagaa gttggttgct ccggctaatt aaatttaaag       240
     catatttggt agtgaatttc gtaaattgaa gtagtttcgg acacagtaat tgaattcgct       300
     agatgaaaca ggtatagttt attaacattg tttcaattcg ttgaaggttt ccaaatcgtt       360
     gtatccagta cccagttcgc atcgacggta tcctagaagg gaagaaaatt gaagtaaatt       420
     actctgtggt agtcgtaagt aaacttatag atagaactaa ggaaaatatt aatcatgaat       480
     ttgatgtatt aggagcgaaa gtaggcgaag aagttggaaa gttggaagtg aagataagct       540
     gtacggaagt ggtctagggc gtaaaggaga aaccaaatat tgtaagtaag attggaaaag       600
     agtttggtga aataactaat aaaattatac ttttagtttg agctgccact aaataaaggt       660
     gtttgctaca aggaattggt tctaatccga aca                                    693
//
ID   BEL-265_AA-I repbase;    DNA;    INV; 6372 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-265_AA_;
KW   BEL-265_AA-LTR; BEL-265_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6372
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2538-2538 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5428-5799] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           629..2644
FT                 /product="BEL-265_AA-I_1p"
FT                 /translation="MGDQEFIQPPLIKPSDVQATSILPHTTEVQSGVTRKV
FT                 SIATNEPPKAVINAAASNPSKQSSSVPHREAFRQFQQRQHPSCPPKRQLPP
FT                 TRQSGPEESVLPGTDSHAPAQNCSEGRIGAAAADMQQTRMQQPQRQNGGHI
FT                 GYDVPPNLHASSQQAPSFPTQWQQNDSSSFVQQQSSTANQMPVGPPINASY
FT                 PMSFYQPSYYPGWRNVPASTGVPQNPLSSTAVRAAPGVYASQTQHDQAQNT
FT                 RQTFPGQVSSFYPGTAAEGVSTAQQLAARQVVSRDLPKFSGDPLEWPMFIN
FT                 AFESTTAMCGIQPDENLARLQKSLVGPAREKVQSILTLPAAIPEILETLRD
FT                 ECGRPEQLVHCLLAKIRHAPSPNVNRLETLITFGREVRNLVTYIEGANLQN
FT                 HLSNPMPLSELVGKLPPSLRLDWGLHTQKVPHVTLKAFSDYVSSVKSAACQ
FT                 VSLPTDSRYDDNRRGKKEKGGFVNAHTVEDNRTGYVSNPKTEFRAKNESSA
FT                 PEPCPACNKTDRELRSCERFASYNVDKRRHLVDQSKLCHRCLGSHGKWPCR
FT                 SKQFCEVDGCKEPHHQLLHTANPKPANVVLQASSSGVISAHCSRQAGILFK
FT                 VSPVLLTSNGKTVSTFAFLDDGSNVTLIEEEIAEDLGLSGCISTLCIQWTG
FT                 SVTRKEPTSRQVNLNIAGVNGGP"
FT   CDS           2927..5422
FT                 /product="BEL-265_AA-I_2p"
FT                 /translation="MLHVCNCTEDEKLHSLVKDYFSVESIGVNPMLPLESP
FT                 EDQRARQLLAQTTRRTESGRFECGLLWKSDDFEFPNSYKMAERRLACLEKK
FT                 LRSKPELRRNVLEQIEEYLERGYAHKATEDELRDSDARHVWYLPLGVVQHP
FT                 RKPGKVRIVWDAAARVGETSLNSMLLAGPDLLTPLLKVMCGFRQRQYAAVG
FT                 DVRQMFHQLLVRPSDRQAQRFLFRSDPTHHPTIYVMDVVIFGASCSPCLAQ
FT                 HVKNTNARDYEELYPDAASAIINNTYVDDFLDSRDTVDEAVRIVEEVRWIF
FT                 DKAGFEIRNWQSNSEELLRRVGVDVNETIKRFSVEKSTVAERVLGMTWDPK
FT                 NDIFVFVTQFREDLQALLSGDVIPTKRQVLRVVMSYFDPLGIVATYTVHGK
FT                 ILIQDVWRSGVKWDDKIAAEDYENWQRWVKLAPNLREVRIPRCYFPNYNPG
FT                 SYDSLELHVFVDASLTAYCAAAYFRIFDNDAPRCALVAAKTKVTPLKPQSI
FT                 PRNELCAGVIGVRLLKSIQENHSIPVQKRYIWTDSTTVLAWLRADPRKYRQ
FT                 FVAFRVAEIQSETNVDEWHYVPSSLNIADKGTKWGNGTCFDPENPWFTGPT
FT                 FLHGSKNEWPRQPTTFSDPQEEFRVVHHHAAVCDSVIDFAKFSRWDDLVKS
FT                 LAYVYHFVRRCRTPQRLTRNDRIAVLEQKDYSAAEASVWRVVQGEVYSDEI
FT                 STLRKNSALPNHQGKSLQRSSPIAKLSPFLDDKGVLRMGSRIKQPAVYYSY
FT                 DFQNPVIVPRTNHITRLLIHKYHQRYGHANVDTVVNELRQRYYIPKTRSVV
FT                 KAGGEAMYVVHGLPSKASRSEYGACYRIQG"
XX
SQ   Sequence 6372 BP; 1702 A; 1606 C; 1630 G; 1424 T; 10 other;
     ttctcgaaaa ttatactgtc caagaagatt ccagccagtc acgagcggtt ttggagtgcc        60
     gtctcccagc tgttgcaaag tctgcaaccg gccggatagc gctgaagata tggtcgcccg       120
     cgacatctgc gggacctggt ttcactatac ttgtgcggga gtgacgtctt cggtgaagaa       180
     tatccactgg tgctgtggct attgctccag ccgtggcgct gccagtagca attcggcaat       240
     ttcagtcagc tcgggaagtt ctagtgcaca actacgtctg aggcaactag aagagtccaa       300
     agctttggac gaccgccttc ttctgcagca agcggaacgg gagcgagcct ttttagccga       360
     gaagcaccaa atagaggcgg aaatccaggc tgaaaggcga ctaagaggaa gcncatcgag       420
     ctttagaagc cgacacagcg gtagaagtcg tcacagttac aggaatgagg taagaacctg       480
     gatcaaccag tcggcggaca cgcctgcaaa ggccgtagat caacaatccg gagcggcaac       540
     atcaacccct attgttacca ccaccggaat cctggcactg acagtcccaa atcaacgagt       600
     cattcctcca gctccgcgtc atcatccgat gggtgatcag gagttcattc agcctcccct       660
     catcaaaccc agcgatgtac aagccacatc aatactccct catacaactg aggtgcaatc       720
     aggcgtaaca cgcaaagtat caattgccac caatgagcca ccgaaagcag tgataaatgc       780
     ggctgccagt aatccgtcta agcaatcatc gtcagtaccg catcgagaag cctttcgtca       840
     gttccagcag agacaacatc catcgtgtcc accgaaacga caacttccac cgacgcgtca       900
     gtcaggcccg gaggagtcag tgctaccagg cacggatagt catgctcctg ctcaaaattg       960
     tagtgaaggt cgcatcggag cggcggcagc agatatgcaa caaacgcgga tgcagcagcc      1020
     tcaacgtcag aatggtggtc atatcggcta cgatgtgccg ccgaacctac atgcttcgtc      1080
     acaacaagct ccctcgtttc cgacacagtg gcaacaaaac gacagttcga gtttcgtgca      1140
     gcaacagtcc tcgacagcca accagatgcc ggttgggcct cctatcaatg cttcatatcc      1200
     gatgagcttc tatcagccat cgtactaccc tgggtggcga aatgttccgg catccaccgg      1260
     agttccgcaa aacccgttat caagcacagc agtaagggct gctccaggag tctacgcctc      1320
     gcaaacgcag cacgatcaag cccaaaacac tcggcagaca tttccgggcc aagtttcgag      1380
     cttctaccct ggaacagctg ctgaaggagt ttcgactgct caacagcttg ctgcacgtca      1440
     agttgtgtcg cgggatttgc caaagttttc gggtgatccc ttggagtggc caatgttcat      1500
     caacgctttt gagtccacga cggccatgtg cgggattcag ccagacgaga acttagccag      1560
     actgcagaaa agtctcgtag ggccggctcg ggagaaggta caaagtatac taactctacc      1620
     ggcggcgatc cctgagattc ttgagacgtt acgtgacgaa tgtggacgac cagaacaatt      1680
     agttcactgc ctgcttgcga agattcgtca cgctccatcg ccgaacgtga acaggctcga      1740
     aactctcatc acttttggcc gagaagtaag gaacctggta acctacattg aaggtgcaaa      1800
     cctgcagaat cacctttcaa atccgatgcc gctgtcggag ctagtaggga agcttccccc      1860
     aagtttgcga ctggactggg ggctccatac gcaaaaagtt cctcacgtga cactgaaagc      1920
     gttcagcgat tacgtttcat cggttaagag tgcagcctgt caggtttcgc taccaacaga      1980
     tagccgctac gacgacaacc gtcgaggaaa gaaggaaaaa ggtggttttg tgaatgcgca      2040
     taccgtcgag gacaacagaa ccggttacgt ctcaaacccg aaaacagagt ttcgagctaa      2100
     aaatgagtct tctgctcccg agccatgccc tgcgtgcaac aaaaccgatc gcgaactccg      2160
     aagttgcgaa aggttcgcta gctacaacgt ggataaacga agacatcttg tcgaccaatc      2220
     gaagctctgt caccgttgcc tgggcagtca cggtaagtgg ccatgccgaa gtaagcaatt      2280
     ctgcgaagtg gacggctgca aggaacctca ccaccagcta cttcatacag cgaatcccaa      2340
     gccagctaac gttgttctac aagcgagttc atctggagtc atttccgctc actgctctcg      2400
     ccaagccggc attctgttca aagtatcacc cgtccttctt accagcaatg ggaaaaccgt      2460
     gtcgaccttc gcgtttttgg atgatggatc gaacgtcact ttgatcgaag aagaaatagc      2520
     ggaagatctg ggattgagcg gctgcattag cacgctgtgt atacagtgga ctggaagcgt      2580
     tactaggaag gaaccaacgt cacgtcaagt gaatttgaac attgctggcg ttaacggtgg      2640
     accanactac gccatctcgg aggtacaaac agtgcctcgc cttgacttac ctcaacaaag      2700
     cctggattat caagcactat ccaataattt ccctcattta cgagggctgc ctgtgacaag      2760
     ctacaccaat gcagtgcctc gcattctcnt tggtcttgat aatgcatcgt tgaaagtggc      2820
     cttggacaaa cgtgagagac gcagcggaga gcctatagca gcgagaacgc gactcggttg      2880
     gacgattttc ggaggtggac gaggaacgca acgtagcgcc aacgtaatgc ttcatgtgtg      2940
     caactgcact gaagatgaaa aacttcacag tctcgttaaa gactactttt ccgtggagtc      3000
     cattggagtg aaccctatgc tacctttgga atcacccgaa gatcagcgcg ctaggcagct      3060
     cttggcgcag actactcgac gaactgagtc cgggaggttc gaatgtgggc tactatggaa      3120
     aagcgacgac ttcgaattcc ctaatagtta caagatggct gagcgtcgtc tagcttgttt      3180
     ggagaagaaa ctccgcagta aaccagaact cagaagaaat gttctggagc agattgagga      3240
     atatctggaa cgcggatatg cacacaaagc taccgaagat gaacttcgag actcggatgc      3300
     acgccatgtt tggtatctcc ctttgggtgt cgtccagcat ccgcgtaaac cgggaaaagt      3360
     acgcattgta tgggatgcag cagcccgggt aggagaaaca tccctcaact ctatgctact      3420
     agcgggacct gatcttttaa ctccactgct gaaggtaatg tgtggatttc ggcaacgaca      3480
     gtacgctgca gtaggagacg ttcgtcaaat gttccatcag ctgctggtca gaccaagtga      3540
     tcggcaagct caaaggttcc tctttcgatc tgatccaaca caccatccta caatctacgt      3600
     gatggatgtt gtgatttttg gagcttcgtg ttctccgtgt ctggcgcaac atgtgaagaa      3660
     cacaaacgct agggactatg aggagttgta tcccgacgca gcgtcagcaa tcatcaacaa      3720
     tacctacgtc gacgatttct tggatagcag agacaccgtt gacgaagcag tgcggatagt      3780
     agaagaagtg cgctggattt tcgacaaggc cggattcgag atccgaaact ggcaatctaa      3840
     ttccgaggag cttctcagac gggtcggggt cgacgtcaac gaaacaatca agcgcttttc      3900
     ggtggagaag tcaacagtgg cagaacgtgt acttggtatg acatgggatc ccaagaacga      3960
     cattttcgta tttgtcacac aatttcggga ggatcttcaa gctctgctgt caggagacgt      4020
     cattcccacc aagaggcaag ttctacgtgt agttatgagc tatttcgatc cgctagggat      4080
     cgttgccacc tacaccgtgc acggaaagat cctaatccag gacgtgtggc ggtctggcgt      4140
     gaagtgggac gataaaatag cggcagaaga ctacgaaaac tggcagcgtt gggtcaaatt      4200
     agctccgaac cttagggaag ttcggattcc aaggtgttac ttcccaaact ataatccggg      4260
     cagctacgat tcacttgaac ttcacgtttt tgtcgatgcc agtttgacgg cgtactgcgc      4320
     tgcagcttat tttcgaatct tcgacaacga cgcaccacgc tgcgctctcg tagccgcgaa      4380
     gacgaaggtg acgcctttga aacctcaatc gatcccgcgc aatgaactgt gcgctggggt      4440
     aatcggagta agacttttga aaagcatcca ggagaatcac tcaataccag tccaaaaacg      4500
     ctacatatgg acggactcga caactgttct ggcttggttg cgagcagatc ctcgtaaata      4560
     tcggcagttt gtcgccttcc gagtagcaga aatccaatca gagaccaacg tggatgagtg      4620
     gcattacgtg ccatcgagcc tnaacatcgc cgataaaggt accaaatggg gaaacggtac      4680
     ctgttttgac ccagaaaatc catggttcac tggtccaaca tttctacatg gttcaaagaa      4740
     cgagtggcca cgtcagccaa ctacgttctc ggatccacag gaagaattca gggttgtcca      4800
     tcatcatgcg gcagtttgcg actccgttat cgacttcgcg aagttttcgc gttgggatga      4860
     tctagtgaag agtttggcct acgtctacca ttttgttcgt cgttgtcgga cgcctcaaag      4920
     actgacaaga aatgacagaa ttgcggtttt ggaacagaaa gactactcag ctgctgaagc      4980
     aagtgtatgg cgtgtagttc agggcgaggt atattccgat gagatatcta cccttcggaa      5040
     aaactctgcg ctaccgaatc atcaaggaaa gtcgttgcaa cgtagcagtc ccattgcaaa      5100
     gttgtcaccg tttttggacg acaaaggtgt tctgcggatg ggtagcagga tcaaacaacc      5160
     tgctgtttat tactcctacg attttcagaa tccggtgatc gttccaagaa ccaaccacat      5220
     tactcgtctg ttgatccaca aatatcatca acgctacggc cacgctaacg tcgatacagt      5280
     tgtcaacgag ttgcgtcaac ggtactacat ccccaagact cgttccgtcg tcaaagcagg      5340
     tggtgaagca atgtatgtgg tgcacggtct accgagcaaa gccagccgct ccgagtatgg      5400
     tgcatgctac cgcatccaag ggtaacaccg tacgtccgcc catttacgtt cacgggccta      5460
     gattatttcg ggccactgat catcaagcgt cgtcggagta atgaaaaacg gtgggtggcg      5520
     ctgttcacat gtttaacagt tcgcgctgta catgtagaag tagtgcacac actgtcggcg      5580
     gaatcctgta agatggcgat gcgccgtttc atttcgagaa gaggcacacc gcaacagata      5640
     tacagcgata atggcactaa ctttcgggga gcggcccgag aacttgccga tgaaacaaga      5700
     atcatcaatc gagagttggc gacctcgttt accaacgctg aaatagaatg ggtattcaac      5760
     cccccttccg ctcccgcacg tgggtggagc gtgggagcgt aaggtgcgct caatcaagga      5820
     cgcgcttaaa tctttacatc acgatcaaca tttgaatgat gaggagctaa caactttcct      5880
     agctgaagct gagatgatag tcaactccca tccgctaaca tttgtaccac tggaggattc      5940
     tacagaagaa gcagttacgc caaacaactt tctgctaatg agttcaagtg gtagcaacaa      6000
     ttcgtcgcgg ataccagtta acgaanaagt tcctttgaga gttaactgga ggttgatgca      6060
     gcaacttttg aaccagtttt ggaagcggtg gatacgaggc tacctcccaa cgatagctag      6120
     acggnccaaa tggttcagtg acgctcgcgc gctncagntg ggcnatccgg tggtcatcgt      6180
     agacgaagcg gtccgtaacg gatggttacg tggccgtgta gtaganacct acccagcaaa      6240
     ggatggacaa gtgaggaagg tcgatgtcaa aacttcatca ggagtgttcc agagaccagc      6300
     gatcaaagtg gccttgctgg acgttcaaca gagtggtaag gccggtcaag actaaggcat      6360
     tacgggtcgg gg                                                          6372
//
ID   BEL-265_AA-LTR repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-265_AA_;
KW   BEL-265_AA-I; BEL-265_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-732
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2539-2539 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 732 BP; 229 A; 136 C; 127 G; 238 T; 2 other;
     tgttgcgaat tacgcctgct gggccctttg cctggctctt cgtcgagtcg gcgcggaaga        60
     atgtcgacgc gttgcgtcgt tcgtcaccaa tgacacgtcg atgacggact cccgacgaag       120
     acatcggccg agataatact gaacacaagt gaccacgcga cgtcgcaaag ttcctaatat       180
     taatgttatt catatgattt atttcctaat attaatgtta ttcatatgat ttatttcctc       240
     aatccgatta attatctaca tctgaattcg ttagtaatct atttctnata ttcaaggttt       300
     gtgaagtgtt gtttcatgct cggtttcatg caattaatta tctactaaaa ttatgttcat       360
     gcaacttaaa aacaacaaca acattaaata cttatgctta cgtaaaatca ttccttaaat       420
     tacagttgaa attgatagtt cttatctact aaagtgctct taaaatctca attataaact       480
     aattggtacg gatttgtaag tacggatcaa gcaacatatg gaatcaatcg attaagccat       540
     cttttttgta gcatacgaac tgcatagcat atgtactgcc tcataacctg atactggaag       600
     gctaattgga cnaatcgggt agtttagaaa ctaatttgta agttggcctt aaaaatactg       660
     aatttataat aataaacgta tatttccagt cgagtttacg gaaacaccga actacgaagg       720
     agttttgtaa ca                                                           732
//
ID   BEL-266_AA-I repbase;    DNA;    INV; 6299 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-266_AA_;
KW   BEL-266_AA-LTR; BEL-266_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6299
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2540-2540 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5352-5912] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(741..3269,3273..6299)
FT                 /product="BEL-266_AA-I_1p"
FT                 /translation="MPSGVTLVGCTNTAPLMLPPSNSLHNKNQGPADNKSQ
FT                 LSKVASSRSSTKQRQMQLELQRLDEERKLQEKEEASKREYLQKRFELLREI
FT                 ASETSSTSDLDVREDSPSERVNSWLQREIPNSQIASSAGLDNTFVLRPAPA
FT                 VPSNVVDLTALRGTRNRIPTTGQSIQDSNRVPPRSIRFADSSVHNFDPVQR
FT                 STPRRYQMQSDCDHNLTQSHVAARQAVSRELPIFSGSPEEWPLFYATFNST
FT                 TEICNYTQEENLLRLRKCLKGKAFEAVKCRLMHPSNVQGIISTLKMLYGNP
FT                 EVIVHNLMAKISDTPGPKADKLDTVVEFALSVQNLCATIEACELQEYSYNV
FT                 VLLKELVDKLPPSIKLDWAKHRRTLSVVHLSMFADWLYDLAETVSPIASLQ
FT                 NTRIGKKGSAFLNVHSVEQTVQGSVSIEENSSSKSCPACENNCTELAKCQR
FT                 FVDLTYNSRWAVIKQSGTCRKCLKIHKGTCKLQQICGQDGCTFKHHPLLHN
FT                 TQRVGGTVAKEPNVPSSSVATNERYSDKRDCNAHHKSATKTLFRVVPVVLY
FT                 GRNRTLKTYAFLDDGSAFTLMDEQLAEELNLDGKLDPICLRWTGDKHRFES
FT                 SSKRVDLEISGTEINSKKYHLREVHTVPNLGLFRQSICMEDLVRQYRHLQG
FT                 VPAESYENVQPRLLIGSNNTNLGYPQKGREGGMFEPVATKTRLGWIIHGGA
FT                 DGGEFSGYHEWNATVCCENSDNNLQHAMQEYFSLENMGISKPSQLVLSADD
FT                 QRAQSISQTMFRNESGRFVTSLLWKFDEFRLPNSKPTALQRLRCLETRMKR
FT                 DPALTQVLHSKIEDYLRQGYIRKLSSSELKQPKSRVWYLPIPVFNPNKPGK
FT                 IRIVWDAAAKTQGISLNMMLLKGPDQLVSLNSVLHSFRENKVAICGDIREM
FT                 FHQTLIAKDDQDCQRFLRRERSTDAEPSTFVMQVMTFGASCSPSCAQYAKN
FT                 LNAKEHERQFPAAAEAITKKHYVDDMLASVETESEAIKLAKDVRHVHAQAG
FT                 YEMRNWLSNSPVVLDALNATKTSEVSLNLASEAVTEKILGMWWCTATDKFT
FT                 YKLSPKHDSELLAGKRKPTKREMLRTLMAIFDPSGLISNLLIFLKVLLQEV
FT                 WRAGIDWDEQIPDALNDKWEYWLQILPKVQSVSIPRCYRVATSLGENTFVQ
FT                 LHTFVDASECGYAAVTYLRFEENGIVECSIVSAKARVAPLRFISIPRLELQ
FT                 AAVIGARLAETVVNTLSFKINERIYWTDSRDVLCWIRSDHRRYSQFVAFRV
FT                 SELLETSTISNWRWVGSKDNVADDATKWHNKPDLESTSRWFQGPEFLWKGP
FT                 ESWPKEPVHSSCNSTKEELRAHLFYHGTIPVSVIDLEYYDSWTRLLRITAR
FT                 LFRYTDNLRKTVANQMRKSGPLSMVELQRASNYLYRQVQRESYFEEINILA
FT                 NPQGRQIAKSSPIFSFTPFCDEHGVLRMQGRIGNCEHATMDVKNPIILPKN
FT                 HSVTRLIIQDYHVRFHHCNHETVVSELRQHYRIPKLRVICRSVRANCQYFK
FT                 NQRATPVPPLMGDLPTARLAAFTRPFSYIGVDYFGPMYVSVGRRIEKRWGV
FT                 LITCLTIRAIHQEVAHSLNADSCIMALRNFMARRGVPIRIFSDRGTNFVAA
FT                 NKELEAALKEMNQDQLVKEIVSVNTDWEFLPPASPHMRGSWERLVRSVKFN
FT                 LLKMRPQRNPTDESLRNILTEIENTVNSRPLTFVSIEDLNSPVLTPNHFLL
FT                 GSSSGLKPVTPLDDSSRILKRVWRASQSEANLFWRRWIRYYLPELTKRSKW
FT                 FGKIKPISINDVVVIVDPGSPRNCWPMGRIISVKMGKDGQVRTATVQTQTG
FT                 IYERPATKLAVLDVRRDGSVSQEVGVPGGE"
XX
SQ   Sequence 6299 BP; 1861 A; 1454 C; 1445 G; 1536 T; 3 other;
     tcttattctt tagtggctgc gaacgaacaa tttaaaaact ttgttaattt atcgagcgca        60
     tgctgaagat ctgcgtagaa atgtctctcc gctctcacga atccgaaggc gatccacaga       120
     accacagaat tgcaagttcc accccaacga agcagttcaa agtctgctgc ggcgtggata       180
     acggtcgtta ttggcagtgt ggcagatgag gaaatcagta ccatccgatc tgcgcaagta       240
     tagcatccga tcatgacaat ccacaatttg tgtgcccacc atgtcaacca ctcaccagcg       300
     ctcaaaagca gacatacact gtagccccct ctacatcagc tcccgtgagt acagtgcccc       360
     tcgagtatgt taatatgtca tggtcacaaa tctcgcccgt cacaacggga tcaacagtac       420
     ccctgttcag gccgcctagc acatttcctt acccttatgc tattttgcct aggaatccca       480
     ttgtatcaca aattccgtgg gcttcactcg gtacctcaag tcaggtcgct tcttcgaatg       540
     ttttcccagc aatttcaaat ctggctcagg cattaccatc gnatataaat gctccgccgc       600
     ccacttcagt gaatcaatct ataccgcgag attgcatgtc atctgtacnt tgcgagtccg       660
     tggctgcggc atcagtgcca cctatttgcc gcgtgccaac accatcgcta catcaaccgt       720
     ctctaacagc acacgatgga atgccgtctg gtgttacgct ggttggatgt accaatactg       780
     cacctctgat gctgccccca agcaattcgc tgcacaacaa gaatcaaggt ccagcggata       840
     acaaaagtca gttgtcaaag gttgctagtt ccagatcatc tacaaagcag agacaaatgc       900
     agttggagtt acaaagattg gacgaagaaa ggaaacttca agaaaaagaa gaagcaagta       960
     aacgggagta tctccaaaaa cgattcgaat tactgagaga aattgctagc gaaacatcgt      1020
     cgacatccga tcttgatgtg agagaagatt cacctagcga aagagtaaac tcttggcttc      1080
     aacgcgaaat tccaaatagt caaatagcat catcagcggg actagacaat acgttcgttt      1140
     tacgtcctgc gccagccgta ccatctaacg ttgtagatct cacggcactc cgtggcactc      1200
     gcaacagaat accaacgacg ggacaaagta tacaggatag caacagagtt ccgcctagaa      1260
     gtataagatt cgcagactca agtgtacata actttgatcc agtacaacgg tcgactccga      1320
     gacggtatca aatgcaatct gattgtgatc acaacctgac ccagagccac gtagccgctc      1380
     gacaggctgt ctcgagagaa ctacctatct tcagtggttc tccagaagag tggccgttgt      1440
     tctatgcaac gttcaactca acaacagaaa tctgcaatta tacacaggaa gaaaatcttt      1500
     tgcggctccg aaagtgcctc aaagggaaag ctttcgaagc tgtcaagtgc agactgatgc      1560
     atccgtccaa tgtccaggga attatctcca cgctgaaaat gctttacggc aatcctgaag      1620
     tcattgtcca taacttgatg gcaaagatca gtgatactcc tgggccaaaa gcagataagc      1680
     ttgacactgt tgtagagttt gcgttgtcag tgcaaaatct atgcgctaca attgaagctt      1740
     gtgaattaca agagtattca tacaacgttg ttctcttgaa agaactagtg gacaagcttc      1800
     ctccatcaat taaattagat tgggccaaac atcgtcgaac tttatcggta gttcatctct      1860
     ccatgtttgc tgattggctc tacgatctgg ctgaaactgt tagcccgata gcatcgctgc      1920
     agaatactcg cattgggaag aagggatcag ctttcctgaa cgtacacagc gtagaacaaa      1980
     ctgtacaagg ctctgtctct atagaagaga attcgtcatc taaatcgtgt ccagcttgtg      2040
     aaaacaactg tacagagtta gcaaagtgtc agcgatttgt agatcttacc tacaactcaa      2100
     gatgggcagt catcaaacaa tctggcacat gcagaaagtg tttgaaaata cacaagggaa      2160
     cttgtaagtt gcaacaaatt tgtggtcaag atgggtgcac ctttaaacac cacccactac      2220
     tgcacaatac tcaacgcgtt ggcggaacag ttgccaagga acccaatgtc ccttcaagtt      2280
     ctgttgctac aaacgaaaga tactccgata aaagagattg caacgcacat cacaaatccg      2340
     ctaccaagac gctgttccgg gtagtaccag tcgtgctgta tggacgtaat aggactctta      2400
     agacatacgc tttcctagac gatggatcgg catttacgtt gatggatgag cagctagctg      2460
     aagagctcaa tctggatggc aaactggacc ccatatgcct taggtggact ggcgacaaac      2520
     atcgattcga aagcagttca aaaagagttg atctcgagat atctgggact gaaatcaatt      2580
     caaaaaagta tcatctgagg gaagtccaca cagttccaaa ccttggactt tttcgtcaat      2640
     ctatttgtat ggaggatctt gtccgtcaat atcgtcacct tcaaggagtg ccagctgaat      2700
     cttatgaaaa cgttcagcct cggcttctaa tcggaagcaa taataccaac ctgggctatc      2760
     cacagaaagg tcgagagggt ggaatgttcg aaccggttgc cacaaaaact cgacttggat      2820
     ggataattca tggtggagca gatggtggtg aattcagcgg atatcacgaa tggaatgcaa      2880
     cggtgtgttg tgaaaatagc gacaataatt tacagcacgc tatgcaggag tatttctctt      2940
     tggaaaatat gggcatttcc aaaccgagtc aacttgtttt atcagctgat gatcaacgag      3000
     cacaatccat ttcgcaaacg atgttccgaa acgaaagcgg acggtttgtg accagtcttt      3060
     tatggaaatt tgatgaattt cggcttccta acagcaaacc aacagctctt caacgcttgc      3120
     gatgtctaga aactagaatg aaacgggatc ccgcactaac tcaagtgcta cattctaaga      3180
     ttgaggacta cttgaggcaa ggctatattc gcaaactgag ctcatccgag ctgaagcaac      3240
     cgaaatcccg tgtgtggtat ctcccaatat tncctgtttt caatccaaat aagccgggga      3300
     aaataaggat tgtttgggat gcagcggcaa aaactcaagg catctctctc aacatgatgt      3360
     tactaaaagg tccagaccag ctagtctcgt taaactctgt tcttcattca tttcgggaaa      3420
     acaaggtggc catctgcgga gacatccgcg agatgtttca ccaaacactc atcgctaagg      3480
     acgaccaaga ttgccaaaga ttcctacgga gagagcgttc aaccgacgcg gaacctagta      3540
     cgtttgtgat gcaggtaatg acgttcggtg catcatgctc gccgagttgc gcacagtacg      3600
     cgaaaaattt aaatgcaaag gagcatgaga gacaatttcc agcggcagct gaagcgatta      3660
     ctaaaaaaca ctatgtcgac gacatgctag ccagtgttga aactgaaagt gaagcaatca      3720
     aattggcgaa ggacgtaaga cacgtgcacg ctcaagccgg gtacgagatg cggaattggc      3780
     tttcaaattc tcctgttgtt cttgatgcat tgaacgcgac taagacaagc gaagttagtc      3840
     taaatctagc ctctgaagca gtaactgaga aaattttggg catgtggtgg tgtacggcaa      3900
     ctgataagtt cacctacaaa ctttcaccaa agcacgacag tgagctactt gctggaaaac      3960
     ggaaaccgac aaaaagagag atgctgcgta ccttgatggc catattcgac ccgtcgggac      4020
     tcatatcgaa cctcctcatc ttcttgaaag tccttctgca ggaggtttgg agagcaggca      4080
     tagactggga cgaacaaatt ccagatgctc ttaacgataa atgggaatat tggttacaga      4140
     ttctcccaaa agttcaatct gtcagtattc cacgctgcta tcgcgttgca acgagtttgg      4200
     gagagaacac attcgtccaa ttacatacct ttgtcgacgc tagtgaatgc ggatatgctg      4260
     ctgtcaccta tctacgcttc gaggaaaatg gtattgtaga atgctcgatc gtttctgcta      4320
     aggcgagagt agcacctctc cggttcattt cgatccccag actagaactg caagcagcag      4380
     tgattggagc tcgattggcg gaaaccgttg ttaacacgct atcgttcaaa atcaatgaaa      4440
     gaatttactg gacggattct cgcgatgttc tgtgctggat acgatcggat cacagacgct      4500
     actcacagtt cgttgcgttt cgcgttagtg aacttctcga aacgtccacg atttcaaatt      4560
     ggagatgggt tggttctaaa gataacgttg ctgatgatgc gaccaagtgg cacaacaagc      4620
     cggatcttga gagcactagc agatggtttc aaggaccgga gttcctttgg aaagggcctg      4680
     agagctggcc caaagaaccg gtgcacagta gctgcaacag tacaaaggag gagctgcgag      4740
     cacatctgtt ttatcatgga accatacctg tatcagtcat cgatttggaa tactacgatt      4800
     cgtggactag gcttctacgt atcaccgcta ggcttttcag atacacggat aatcttcgta      4860
     aaaccgttgc aaaccagatg cgtaagagtg gtccattgtc aatggtcgaa ttgcagcgag      4920
     cttctaatta cctctatagg caagtacaac gggagtcata tttcgaagag atcaatatac      4980
     ttgccaaccc tcaaggaagg caaatagcga aatcaagccc tatattcagc ttcactccat      5040
     tctgtgacga acatggtgtg ctacgtatgc aaggaaggat tggtaactgt gaacatgcaa      5100
     caatggatgt aaaaaatccc ataatactac cgaagaatca cagtgtaact cgactcatca      5160
     tacaggacta tcacgtaaga tttcatcact gtaatcacga aactgtcgtg agcgaattac      5220
     ggcagcacta tcgcatccca aaactaagag tgatatgcag aagcgtaaga gcaaactgtc      5280
     aatactttaa aaatcaacgg gcaacgccag tccctccgct catgggcgat ctgccaacgg      5340
     cgagacttgc agcttttacg aggccattct cgtatatcgg tgtcgattat tttggaccaa      5400
     tgtatgtatc agttgggcga aggatcgaga aaaggtgggg cgttttgata acatgcctaa      5460
     ccattcgagc gatccaccag gaggtggcgc attctcttaa tgctgactca tgcataatgg      5520
     cgctaagaaa ctttatggct agacgaggcg taccaattcg gattttcagt gatcgaggta      5580
     cgaatttcgt agcagccaac aaagagctcg aggcggcttt gaaagaaatg aaccaagatc      5640
     aactggtgaa agaaattgtg agtgtcaata ctgattggga gtttcttcct cctgcctctc      5700
     cacatatgag gggaagctgg gagcgactcg tgcgttctgt taagttcaac ttattgaaaa      5760
     tgagacccca gcgtaaccca acagacgagt cgctacgcaa catccttact gaaatcgaaa      5820
     atacagtcaa ctcccgccct ctgacgttcg tgtccattga ggatttgaac tctccagttc      5880
     tcacgccaaa ccattttcta ctggggtcat ccagcggttt gaagccagta actccactag      5940
     acgacagcag ccgtatactt aagcgtgtat ggcgagcatc acaatcagaa gcaaatctct      6000
     tctggcgaag atggattcgg tactatttac cagagttaac aaaacgatcc aaatggttcg      6060
     gtaaaataaa accaattagc attaatgatg tcgtggtgat agtcgaccca ggatcacccc      6120
     ggaattgttg gccgatggga cgtatcattt cagttaagat gggcaaggac gggcaggtta      6180
     gaaccgctac agtgcagact caaaccggaa tctacgagcg acccgccacg aaactggctg      6240
     tgttggatgt tcgacgcgat ggatcagtaa gccaggaagt tggcgtacct gggggggag       6299
//
ID   BEL-266_AA-LTR repbase;    DNA;    INV; 720 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-266_AA_;
KW   BEL-266_AA-I; BEL-266_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-720
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2541-2541 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 720 BP; 264 A; 108 C; 137 G; 211 T; 0 other;
     tgtcacgacc cctcggtcgg cgcgtcggag tagacagttg aacaatcgag cagccaccaa        60
     ctctcggatg agatgagctg gcattctgac attgatgtgt acgctaggaa cggatgccat       120
     atcgattgtg aaaaccatga agcaagagaa gtgatgtgca catgaaaaca gatttattcc       180
     tattattgca atgcctaatt aaaattatat cgaattagtg tctaatcagt ttttgaaata       240
     cttgtagggt aaggtttgat tgatacaaag ttaaatacaa tctaaaccaa tttgtccttc       300
     tcagatataa ccatgaaata gtgaattatc caacaatagt ataagttaca caaaaattaa       360
     aattatgatt gccggtaagc ttaattgaaa tccaaatgag aatttgctaa ttatatgcac       420
     taatgatagg tggcttcgat taagaagtat tacttcgatt atcatagttt ggagcctgat       480
     gtaataacga aaagtgacgg taaattcaac tagaatcaat gtcagattag aaacttgtaa       540
     tcggacgttt ttacaggagt aaaactaaag gtattcagaa gggtgaacat taaaagaaag       600
     gggagtaaga atcctaaacg taagtttaca aaacaaaatt gttatcgata tttttccaaa       660
     aagttatgta tctcattaca gaaagttttt attacacacg ttattcaaaa acttggaaca       720
//
ID   BEL-267_AA-I repbase;    DNA;    INV; 6283 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-267_AA_;
KW   BEL-267_AA-LTR; BEL-267_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6283
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2542-2542 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5510-5899] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..1416
FT                 /product="BEL-267_AA-I_1p"
FT                 /translation="MSSQGSKRGQFTAQTNVVGATGVSEKDTDRSRTSVEQ
FT                 FTVNPKVPPPGQQVIDTKTDNVNPANTGTLKKTRIKPPAGDNESVSKLPPA
FT                 TVVNANEYVRRNPFRRARENLFDRCQVCGNQISDNLLQCNSCNANYHLECV
FT                 KMSSGPGGLTWWCTNCRTAVSASAKPRQLQQVSTKALSDPALHTFVEYPHQ
FT                 NPPPVVPPKGQPEILEPTVRQTRSKASISSRGASRRIELQLQKLEEEKKFH
FT                 QQYLDQKYSLMLELETECSSQVLDENELGKIEDWIAATEGCGEELDSGVDA
FT                 ELTTERHMPDNARVSSEHAARETHQQPSNVNELQRPPVENSAYVSRQNRPP
FT                 PPGISNLNDIRAAINDVGFTGQIGSAYGHPDQHVGVASTTNHFFPRQGSTP
FT                 MHRSVPVPHPTIYPQHLDPVGNYTVCILNRSQLAARQAVSRDFPEFSGNSE
FT                 D"
FT   CDS           2922..5147
FT                 /product="BEL-267_AA-I_3p"
FT                 /translation="MKQYFALDSLGVKTTSKELLSSEDQRARSLLQTLTIP
FT                 KDGRYECGLLWKYENVRLPDSKIMALNRWRCLDRRMMRDPSLAKVLRLKID
FT                 DYVTKGYFRKLSDQELLVPRDRVWYLPMFPVWNPNKPGKTRLVWDAAATAR
FT                 GVSLNSVLLKGPDQLTSLLRILIKFREFKVAVCADIREMYHQVLMREDDQH
FT                 CLRFFWKQEESDSEPSIYVMMVQPFGACCSPSIAQHVKNHNAERFAQECPV
FT                 AVQAITDCHYVDDMLISVETEEEAVQVSNDVREIHKQGGFEMHNWLSNSSL
FT                 VIQTLQQPIAKEKDFSTSQDTTTEKVLGMWWDTNSDCFTYKLSSRHDSELL
FT                 TGDRRPTKREVLRTLMLLFDPLGLIAHFTMLLKVLLHEIWRTSVGWDDVIE
FT                 DTQFAKWLVWLHALPYVQDIRIPRCYRISISLEKGVEIQLHTFMDASENGF
FT                 AAAVYLRFQKDDAIECSLVGAKTRVAPLKFLSIPRSELQSCILGVRLSETI
FT                 LQSLSVKITRQFYWTDSKDVLCWLNSDHRRYSQFVAHRVSEILEMSNVSDW
FT                 HWIPTKHNVADDGTKWKKTINLDSSNRWFVGPDFLRGLPGTWPGNAFTIGS
FT                 TDEELRPHLLVNFKTEEPIIIPQNFSLWSKLLRRIAYLYRFTDIWRRRVNK
FT                 TPLNQGLLTQSEFAQAERYLYRLAQDNTYCEEKAALTSKRQVSKTSSLRRL
FT                 SPFLDEQGILRVRGRTAACKFADYDAANPIILPAKDHITKLI"
XX
SQ   Sequence 6283 BP; 1798 A; 1529 C; 1499 G; 1448 T; 9 other;
     ctggaaataa attgatggat tcatacgatt cacgtctcgg atagtttagc aacatcttat        60
     aaattctttt cctacgaaat gtcgagtcaa ggatccaaga ggggtcagtt caccgcccag       120
     acaaacgttg ttggagctac cggagtttcc gagaaggaca cggatcgcag tcgtacgtct       180
     gttgagcagt ttacggtaaa ccccaaagtc cccccncctg gacagcaggt aattgatact       240
     aagaccgata acgttaatcc tgccaatacc ggtacgttga agaaaactag aatcaaaccg       300
     ccagctggcg ataatgagag cgtgtcaaag ttacctccgg ctaccgtagt caacgcgaat       360
     gagtatgtca ggcgtaatcc gttccgtcgc gcgcgtgaga atctattcga tcgctgtcaa       420
     gtgtgtggca atcaaatcag tgataatctt cttcagtgca atagctgcaa tgcaaattac       480
     cacttagagt gtgtgaaaat gtcgtcaggc ccaggaggac taacatggtg gtgtacgaac       540
     tgccggactg cggtaagtgc tagcgcgaag ccccggcaac tacagcaagt ttccaccaag       600
     gcactatcag atcccgcctt gcacaccttt gtagagtatc ctcaccaaaa tccaccccca       660
     gtagtgccgc ctaagggtca acctgaaatc ctcgaaccaa cagtgcgaca aacgcgtagc       720
     aaagcatcca tcagcagccg tggcgcaagt agacgaatcg aactacaact gcaaaaatta       780
     gaagaggaga agaagtttca tcagcagtat ttagatcaga agtacagcct aatgctggag       840
     ctggaaaccg aatgtagcag tcaagtgttg gatgagaacg agttggggaa aatcgaggat       900
     tggatcgccg caacggaagg ctgtggggaa gagctggatt ccggagttga tgcagagtta       960
     acgaccgaaa gacacatgcc agacaacgca agggtatctt cggaacacgc cgctcgagag      1020
     acacatcagc aaccttcaaa tgttaacgaa cttcaacgtc ctccagtcga aaacagtgcc      1080
     tacgtaagtc gtcaaaacag accaccaccg cctggcatca gtaatctgaa tgacatcaga      1140
     gcagcaatca acgacgtcgg cttcactggt caaatcggat cagcatacgg ccacccagat      1200
     caacatgtgg gagttgcatc tacaacgaac cactttttcc ctcgacaagg ttctacaccg      1260
     atgcaccgtt ctgtacctgt acctcatcca actatttacc cacaacatct cgatccggtg      1320
     ggaaattata cggtttgcat actaaaccga agtcaattgg cagctcgcca agcggtttcg      1380
     agagattttc cggaatttag tggtaattcc gaagactgac cactcttcct ctccgtgttc      1440
     aatacgtcga cccagatgtg cggattctct cccgaagaaa acatgttgag gctaaggaaa      1500
     tgtgtgaagg ataaggcgtt agaagctttg agatgtcgcc tgttgcaccc atcaactgta      1560
     gatggtgtca ttgcaaccct caaaatgttg tacggaagac cagaagctat catccaatcc      1620
     ataatcaaaa aggttagagg ccttccggct cccaatatgg aaaaactgga aaccgtagtc      1680
     aattttgctc tcgcagtgga aaacctggta gccaccatgc aagcctgtca aatcggagat      1740
     ttcgcatata atgcttcctt gcgactagag ttagtcgagc gcctgtcgca cccatcaact      1800
     ggctgggctg ggctaaatgc gcccgcaaca atcctgcccc taatctcatc gattttagca      1860
     attggttgta cagtaccgca gaagatgcta gtgctgtcat ggtttctcca tcatcaacta      1920
     cgaagcctcg cagtactaaa aaggaagggt ttttgaacca tcattcggaa accgattccg      1980
     aaacccaacg cgaacaattt tcggagtcag ccgcagaatc gtcaagcagg tatgaagcga      2040
     caaaaggctg cattgtgtgt aaaggagtct gctcttcgct gaccaactgt aagcgtttca      2100
     cggaacttag ctttgattca aagtgggcaa ctatcaaaga acacaagtta tgtcgcaaat      2160
     gtctccgaaa acataatgga agctgcagac tcaagcaaca atgcggaatg aatggctgca      2220
     cctacctgca ccatccgctt ctccatggat caaggcacgc tagcggtgaa aatgtcccgc      2280
     aacaagattc atcgagagtt gaaaccacca gcatcaacat acatcaggga caatcagact      2340
     tcttattccg catatccccg gttacgctcc atggcccgng cacaanaatt cggacatacg      2400
     catttgtaga cgacggttca gagctgacgc tggtcgaaca gagtcttgcc gacgaactcg      2460
     gactgaaggg caccaacatt cgcctgtgct tgaaatggac aggtgataca tgtcgaactg      2520
     aaaaatcgtc acagcgagtt ggactgcaac tatctgccgc acagaacccg gacaagacat      2580
     acaaccttca agacgtacgc accgtagaaa gcttgaaaat tcgtccacaa acgctacaag      2640
     catccgaatt gcagaaacgc tactcccact tagcaggaat cccattagaa tcttaccata      2700
     acatcagtcc gggcctctta atagggctcg acaacgcaac tttaggacac gttatcaaaa      2760
     gtcgagaagg aggactaaat gagcctatcg ctgttaaaac acgtctcggg tggacagtat      2820
     acggatgttg ttcgaacgac ggtaagtcga ttcaccatgt caaccaccac agcgtcgagg      2880
     cttgccattg tagcanaaat gatgatgatc ttcactcaac gatgaagcag tacttcgctc      2940
     tggacagcct tggtgtcaaa acaacatcca aggagctact gtcatcagaa gaccagcgag      3000
     ctcgttcgct gttgcaaact cttacaattc ctaaagacgg acgatacgaa tgcggcttgt      3060
     tatggaagta cgaaaatgtt agactaccgg actcaaagat aatggcccta aaccgctgga      3120
     gatgtttaga tcgtcgtatg atgagagacc catctcttgc taaggttctc agattgaaaa      3180
     tcgatgacta cgttacaaag ggntatttta gaaagctgtc ggatcaagag ctgttggttc      3240
     cacgagatcg agtgtggtat ttaccgatgt tcccggtctg gaatccaaac aaaccgggta      3300
     aaaccaggct ggtgtgggac gcagcggcaa ctgctcgtgg tgtatccttg aactccgtgc      3360
     tattgaaggg gccagaccaa ctgacttcgt tgctcaggat tctcatcaag ttccgtgaat      3420
     ttaaggtagc cgtctgcgcc gacattcgag agatgtacca tcaggtactg atgagggagg      3480
     atgaccaaca ttgccttcgc tttttttgga agcaggaaga aagcgattcc gaaccaagca      3540
     tttacgtcat gatggtgcag ccttttgggg cttgttgctc gccaagcatc gctcaacacg      3600
     taaagaatca caacgccgaa cgattcgcac aagaatgccc agtcgctgtt caagcaatta      3660
     cagactgtca ctacgttgac gacatgctta ttagcgtgga aacggaggaa gaagcagtgc      3720
     aggtntcaaa cgatgttcga gagatccaca agcagggtgg ttttgagatg cacaactggt      3780
     tgtccaactc gtcgctagtg atacagactc tacagcaacc aatagcaaaa gagaaggatt      3840
     tcagcactag ccaagacacg acgactgaaa aggttcttgg tatgtggtgg gataccaact      3900
     cagactgctt cacctacaag ctttcctccc gccatgattc cgaactgttg acaggagatc      3960
     ggcgcccaac taaacgcgaa gtgttacgga ctcttatgct gttgttcgat cctttagggc      4020
     tcatcgccca cttcacgatg cttctgaaag tattgcttca tgaaatttgg agaacctcag      4080
     ttggatggga cgacgttata gaagatacac agtttgcaaa atggctggtg tggttacatg      4140
     cgttacctta tgtgcaagac atcaggattc cacggtgtta ccgcatttcc atctctttgg      4200
     aaaaaggtgt cgaaatccaa ctacatacct tcatggacgc tagtgagaat ggattcgctg      4260
     ctgccgtgta tctaagattc cagaaggatg acgcaataga atgctcgcta gttggcgcga      4320
     aaacaagagt ggcgccattg aaatttcttt caatcccacg ttccgaactg cagtcatgca      4380
     tacttggcgt aaggctaagc gaaaccatcc tccaatcgct atcggtgaag ataaccagac      4440
     aattttactg gaccgattct aaagacgtgt tgtgttggct gaattcagac caccgccgat      4500
     atagccaatt cgtcgcacat cgcgtcagtg agattcttga gatgtcaaac gtaagtgact      4560
     ggcactggat tccgaccaaa cacaatgtgg ccgacgatgg caccaaatgg aagaagacca      4620
     tcaacttaga ttcttcaaat cgctggtttg taggtccaga cttccttcgt gggctacctg      4680
     gaacgtggcc aggaaatgca tttacgattg gttctactga tgaggagttg cgcccgcatc      4740
     tactagtgaa tttcaaaact gaggagccaa tcatcatacc gcaaaacttc tccctgtggt      4800
     ctaagttgct cagaaggatt gcgtatctct acagatttac cgacatctgg cgccgccggg      4860
     tcaacaaaac gccactaaac caaggtttgt tgacccaatc ggaattcgct caagccgagc      4920
     gctacttata tcgtctagcn caagacaata catattgcga agaaaaagct gctcttacat      4980
     cgaagaggca agtatcaaaa acaagctcac ttcgccggct tagcccgttt ttggacgagc      5040
     aaggaatcct gagagttcgt gggcgcaccg ctgcgtgtaa gttcgctgat tatgatgcag      5100
     caaatcctat tatcttgcca gctaaggatc acatcacgaa gttaattgng gaggactttc      5160
     atcgcagttt cctgcaccaa aatcacgcta ctattatgaa cgaaatacgt caacgattcc      5220
     atgtaatccg gctcaaaagt gtttaccgta acgttcgtag agaatgtcaa cagtgccgta      5280
     atgatcaagt cncaccgcta ccacctgcta tgggagatct accacagtca cgtcttgatg      5340
     ccttcactct tccgttcgtc tacatggggg tggattattt cggccctctg tttgtcgtag      5400
     ttggacgtcg aacagaaaag agatggggtg tcctagccac ttgcctgacg acacgcgcca      5460
     tttgcataac gagattgccc acactttgaa cactgattcg tgcgtcatgg cactacggaa      5520
     cgtcatggta cggagggggg tcccagcggt catatacagt gaccggggaa caaattttca      5580
     aggcgctagc aaagaaatgc agcaagaaat gcacgatcta caggaacgcc tcgcatccaa      5640
     attcactacg tcaaaaacgg agtgggtttt tattccaccg gcctccccac acatgggagg      5700
     ggcgtgggaa aggatgatcc ggacagtcaa acaaaaccta tacaaactac agcccaatag      5760
     gtttccgagt gacgaagttc tgagaaacac tatgctggag atcgaaaatg ttgttaactc      5820
     gcggccactt accgaaatcc cactggatga tgatcagtca cccgtattga cccctaatca      5880
     tttcttggtg ggatcacaga acggtcttaa agctcgcatt ccgttcgatg atagcccatc      5940
     ggccttgaaa tacggttggc aacactccca agtgatggcc aataagtgct ggcggctatg      6000
     gcttcgtgac tatctaccta cgatgacacg aagaagcaaa tggttcagca ttgaaatcgg      6060
     tgacatagtg gtcattgtgg atcctaagct gccacgcaac cagtggccaa agggaagggt      6120
     tattggagtc agtacatccc aagatggtca agttaggagc gccacagttc agacaccaaa      6180
     tgggggaatt tacgagagac cggcagtgaa gctcgcagtg ctggacgtag gcgtttcgga      6240
     gactacacat ccggagaatc gtccgtgtat tcaagggggg gaa                        6283
//
ID   BEL-267_AA-LTR repbase;    DNA;    INV; 534 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-267_AA_;
KW   BEL-267_AA-I; BEL-267_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-534
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2543-2543 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 534 BP; 181 A; 103 C; 98 G; 152 T; 0 other;
     tgttaggagc gccacgtcca ttggcaagcc ccccggggtt cgaccgatcg cgccacaccc        60
     gtgcgtcacc cgaaggatcg tcgcactaag agtgtgcata acaaatagag gaaaagatca       120
     atagatagaa tcatctagtg aactcttaaa acaacaccca aattgaattc taattgtgag       180
     gtgaaattta actgaattta ctattgaata taaaatataa tttgttcttt gttaatttag       240
     tataggcgat tcacgccaaa tagaccatca ggttgtatga ggattcgata attagcataa       300
     taatcttcta ttgctggggt atggtacttc aaaacacaat tgataggcca acatttcaat       360
     ataataatta taattgatag gtttgtaccg aaaattcgtg ccaagctgag tcctccgaga       420
     cttaaatccg ctgtgaatca cgaaaagtaa gcgaattatg ccaaaaaacc atgttcatgt       480
     gatatctaac taccatactt cacaggaatt tataattgta tttctacgaa ctca             534
//
ID   BEL-268_AA-I repbase;    DNA;    INV; 2176 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-268_AA_;
KW   BEL-268_AA-LTR; BEL-268_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2176
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2544-2544 (2012).
XX
DR   [2] (Consensus)
XX
CC   'GCTGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..1772
FT                 /product="BEL-268_AA-I_1p"
FT                 /translation="MDRKSKNFKCSCLALSKSMRSRDCGINSRLDTNNDLP
FT                 CNSCRCLPKSITGPINCSTRLTLRLRQIEDERAIQRRERDAERRALAQEKN
FT                 ILQKKYELLEMQLAQRRHGTKRNQCAIDKAALVHHTHAKSDKRAALSNSDK
FT                 QRTNIDKTVSNNVSYKLNHIEKSDSMDLDGIQPREISAFPRIDPKKQNLIA
FT                 AEVMVDTSPYPSPFKLSTNDHSNAFKHIAISNGVANNDVMCTLRSLVENEM
FT                 QSKAPPTFIPPNVPDPAPPPLLLYASQDKTISHDLYSVACELSFRSVFIRE
FT                 LETTATVDRSTQIYPRILNAFVDGLSSVTNHRAQHNRSQRNRSRSYHHRES
FT                 HTRRTISGPSFRDYELDHADQTDKHWNGKRYGENSLSMTAIIHLNVCCTME
FT                 SCVISCEITQGAIQKQLSNRLCLCCVLVVIKRFSISISSMFEKHQRTVNNQ
FT                 HNYRQNNDVVSGLQICRRRSPIIRTNRSINIDLSITVLPWILIDLNSEQES
FT                 LRLLTIEVDHSNVFKNNLEFEENDPFAGKPMTESSIEQDISLLMPFPLYWK
FT                 QHNNRHASEYLSQNYETKLNQLVLDNSDDPKKNINDR"
XX
SQ   Sequence 2176 BP; 719 A; 449 C; 469 G; 539 T; 0 other;
     ctaaaagatt tttcaacctg atggatcgaa aatcgaagaa cttcaagtgt agttgcttgg        60
     cgttgtcgaa atcaatgcga tcgagagact gcggcataaa ttcgcgcctc gatacgaaca       120
     acgatttgcc atgcaacagc tgcagatgct taccgaaaag catcacagga ccaataaatt       180
     gctctacccg ccttaccctc cgactgaggc aaatagaaga tgagcgcgca atccagcggc       240
     gcgaaagaga tgcggagaga agagctttag cacaagagaa gaacatcttg cagaagaaat       300
     atgaattgct tgaaatgcaa ttagcccaac gacgacatgg gactaaacgc aaccaatgcg       360
     ctatcgataa agcggccttg gtgcatcaca cacacgctaa atccgacaag agggcagcgt       420
     taagtaatag tgataaacaa cgcactaaca ttgataaaac agtgtctaac aatgtgtcgt       480
     acaagctgaa ccatatcgag aaatcggatt ctatggattt ggacgggatt cagccgcggg       540
     aaatcagcgc gtttccgaga attgatccga aaaagcagaa tttgatagcc gccgaagtta       600
     tggtcgatac atcgccttat ccatctccat ttaaattatc gactaatgat cactccaatg       660
     cttttaaaca catagctatt tcaaacggtg tcgctaacaa cgatgtaatg tgtacattga       720
     gatccttggt agaaaatgaa atgcaatcaa aagctcctcc aacattcatt ccaccaaacg       780
     tgccggaccc agcaccacca cctctgctgc tatatgccag ccaagacaaa acaatatcac       840
     acgatttgta ttctgtagcc tgtgaactct cgtttcgttc ggtgttcata cgtgaactcg       900
     aaaccacagc aactgtggat cgaagtacgc aaatatatcc gaggatactc aatgcttttg       960
     tggatggact ttctagtgtc actaatcatc gtgcccaaca caaccgtagt caacgaaatc      1020
     gctcaagatc atatcaccat agggaatcgc atactcggcg aactatttct ggaccatcct      1080
     tccgtgacta cgaactggac catgctgatc agactgataa acactggaat ggcaaacgtt      1140
     atggagaaaa tagcctgtcg atgactgcaa tcatacatct caacgtttgt tgtacgatgg      1200
     aaagctgtgt gattagctgt gaaataacac aaggagcgat acagaagcag ctatccaata      1260
     gattgtgctt gtgttgtgta ctagttgtca tcaaacggtt ttcaatcagt attagttcaa      1320
     tgtttgagaa gcatcagcga accgtcaaca accaacacaa ttatcgacaa aacaacgacg      1380
     ttgtcagtgg tcttcaaata tgtcgccgac gttccccaat tatcagaact aatcgatcaa      1440
     tcaatattga tttgagcatt actgttttac catggatatt gatagacctg aactctgaac      1500
     aggagtcatt gcgtttgttg acgatagagg tagaccattc gaacgtgttc aaaaacaatt      1560
     tggaattcga agaaaacgat ccgtttgccg gtaaaccaat gaccgaatcg tcaatagaac      1620
     aagatatatc gttgttgatg ccttttccat tgtattggaa acagcacaac aaccgacatg      1680
     ctagcgaata cttaagccag aattatgaaa caaagttaaa ccaattagta ttggacaaca      1740
     gcgatgatcc caaaaagaat atcaatgatc gttgaagtac tgaaaagtat gaggaagaac      1800
     agtttcgcca tttgaacagc tgcggagata gctggaagaa aaagtatcgt cgcgctgtct      1860
     tccatatgag cggatgcgtg tctcataatt gtttcaagca agatttctaa tcgatcaaat      1920
     acaggttagg taaatactgt aaaatactcg cacatagatg tcatgaggta gttggtgata      1980
     acatagagaa aagtagagat gctgaacagt atcagttaca gtggttcttc aaccgttgca      2040
     gagatggtgt tgaccgtgct agggaaaatg aaaaaatact ttcaaatacg attggagagt      2100
     gatcgtgcag gcagcaattg tgtacacgct tagtaaaatg taaaactggt aataatcagt      2160
     gttacggggg ggagga                                                      2176
//
ID   BEL-268_AA-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-268_AA_;
KW   BEL-268_AA-I; BEL-268_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-380
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2545-2545 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 380 BP; 137 A; 79 C; 68 G; 96 T; 0 other;
     tgttgctgcc agcactgccg cgaaatgtca ccgtgacagg atgacagcat cctcagatag        60
     gttcagaaag gtcagtgata aaatgagaag aataacgatg atggtatcga gtacgaaata       120
     gtaaataaca cgttaaaaac tgaattagcc taactacaat atttttctct acagttaata       180
     attatttgaa catagtgaga tctaagtgaa ctatatctaa acgctattac agattatcac       240
     aattataaaa catacgctac acgaatattg aggcaaaact acaattacaa catgaatcta       300
     actgattcgc accacgaccc ccgagtttgc gagctgctca aaagagttca gtcccgaagt       360
     gcctctatgt tcccgcaaca                                                   380
//
ID   BEL-269_AA-I repbase;    DNA;    INV; 6187 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-269_AA_;
KW   BEL-269_AA-LTR; BEL-269_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6187
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6187
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2546-2546 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..6152
FT                 /product="BEL-269_AA-I_1p"
FT                 /translation="MSEVNVKTAGKAGETSNGKSGDQISKNTEIPPSHPSC
FT                 SYSKSPLDNQDPKTVITYEPNSCRTCNKADNSLMVQCDSCDDWHHFDCVGV
FT                 TREVEQNSWNCCRCVTAAAYQKKSNPKLETLKSRKPKKVSTKTKEKKPCKS
FT                 AKHSVDKKKAQKVDKVTTSVRQRSKVIEQEFGTTRTNKIPEVSSKSGKDKP
FT                 VAGTKDAKSIMSTSSRRSERMVLEVQLKKLEAEQTLMEEEMKRKRELLERK
FT                 FSLLEEIAEVASNRSVRSCVADDQQDPAEKVSSWLQDQETDESSWSDDSRS
FT                 TSDTSEDSSVDDETSEEESSPGLPEDDSDESEVPFKPCKQSTPKGSCRPKA
FT                 TSVVQSKSCPALVALTPEQIAARQVVPRDLPKFSGNPEEWPMFLSTYENTT
FT                 RMCGYRDEENMIRLRNCLKDDALNTVRSFLMLPSTVPKAISALKLRFGQPQ
FT                 AIINTLRAKVLGMSPIKADAMDKLIEHALAVQNLCSTIDACGRKEYKRDVT
FT                 LLNELVGKLPPSLKLDWARHQRKLNKVSLFAYSKWIYSVAEDACLVCGTQS
FT                 TEQQAHSKPKNKAFLNTHSNFSTSDVPRQKPSEYQCYKPEKKITEAASIKC
FT                 CAVCKGGCRNAGKCPRFLELSYEARWATVRELRICRRCLRQHSGKCDAKPC
FT                 GKNNCTFKHHELLHKDLAVTSGPSNGTRRPLQEETNVNTHLSSSGVRMFRY
FT                 LPVTLFGIKKQIDCYAFLDDGSELTLIDQDLAKDLEVSGKSAPLCLKWTGG
FT                 THRFEAESLSVDVAISGQSGKKFLLNDVRTVGDLQLPAQTLDVDMLREHFP
FT                 YLRNLPVQSYQDVRPQILIGVKHAKVALVRNSREGKEGEPIAVKTLLGWTI
FT                 YGSCNRPESKNVVFRTYHICECNLRSDEGLHDAVKKFFSLEALGISKPEKN
FT                 CVSSENERAQTMLQALTRFDGDRYETGLLWRYEKIRLPDNKPMALQRFSCL
FT                 EKRMERDPELASTLHEKIADYLAKGYIRKLTTEELEEKQQRVWYLPVFPVV
FT                 NQNKPGKVRIVWDAAAAFHGVSLNSALLTGPDELTSLPAVLCQFRKYRIGI
FT                 CGDIREMFHQVRIRPVDQHCQRFLCRGTADQKPDTYVMNVMTFGACCSPST
FT                 AQFVKNLNAERFKEQYPAATDAIVKKHYVDDMLASEETEEAAIELAKAVRF
FT                 VHAEGGFEIRNWISNSPRVLAELRRNDERTAQKNLDLTAELETEKVLGMWW
FT                 NTANDCFTFKVSWTRFDEALLDGTRRPTKNEVLRVLMTVFDPLGLISNYLM
FT                 HLKIVLQEVWRSGVQWGQLIQDKQFEAWKAWVKLLPLLEQVSLPRCYRKVT
FT                 SAGSATEIQAHIFVDASENGMAAAVYLRFEEAGQIECMLMCAKTRVAPLKY
FT                 LSIPRLELTAAVIGTRLINSMMPELALPISKRFFWSDSRNVLCWLQSDHRR
FT                 YSPYVAVRISEILDSTEEWEWRWVPSKLNVADDGTKWQRRPDLSETSRWFR
FT                 GPEYLWQPQEFWPPPSYKDSTTEEELRPSALFHCHASEPLIPASHFSSWKR
FT                 LVRVTCYVKRFVTNCQRLVKKNGIITGPFSSDELQQAEIHQYRAAQYDVYA
FT                 DEIELLKSNSNHNQQCQQILKSSVIYKLSPFLDANGVLRMKGRVDACEFLL
FT                 DDAKNPIILPRDHPLTRLVIIYYHEKFHHRNQRTVLNEVRQRFCIARLRVA
FT                 LKKVRSNCQRCKNRDAIPKPPEMADLPPARLAAYTRPFSHVGVDYFGPIEV
FT                 TLGRRVEKRWGVLLTCLTVRAVHLEIAHSLSTNSCIMALRNFVVRRGTPVS
FT                 FYSDRGTNFIGADRELREALKTVDQEMIMKEFTSPQTAWHFNPPASPHMGG
FT                 SWERLIQSVKRNLGEIVGNRRPNDEELRNALIEVEGVLNSRPLTDVPVDDE
FT                 SAPALTPNHFLLGSSDGAKPLTLCSDNLVVRRHGHELSQVMANRFWKRWLQ
FT                 EYLPEITRRTKWHQKVKAIEVGDIVVITDPEHPRNCWPKGRVIGTTNRDGQ
FT                 VRRATIQTMKGIYERPAVKIAVLDVKSEVE"
XX
SQ   Sequence 6187 BP; 1820 A; 1350 C; 1609 G; 1408 T; 0 other;
     atttttaata tcgtttacgg tggtgccaac gaggtcttgc cgaagccgac gttggttagc        60
     tgctgcgatt acagccgttt atcggaatct tcgtgctgaa ttcattacgt agagcacggc       120
     cttcttctgg caagaagatg tccgaggtaa acgtgaaaac agcaggtaag gcaggtgaaa       180
     cgtctaatgg taaatcagga gatcaaatct ccaaaaatac cgaaatcccc ccatctcacc       240
     cctcttgctc atacagtaaa tctccccttg ataaccaaga cccaaagacc gtaatcacgt       300
     acgaaccgaa tagttgtcgt acttgtaaca aggccgataa cagcctcatg gtccagtgtg       360
     actcgtgtga tgattggcat cattttgact gtgtaggagt gaccagagag gtcgaacaaa       420
     atagctggaa ttgctgtaga tgcgtaaccg cggcggcgta ccagaagaag tcgaacccga       480
     agttggaaac cctgaagtca cggaagccca agaaagtcag cacgaagacg aaggagaaga       540
     agccgtgcaa atcggccaag cactccgtgg acaagaaaaa ggcgcagaag gtggacaagg       600
     tgactacgag tgtcaggcag cggagtaagg taattgagca ggaatttggt acgacgagga       660
     ccaacaaaat accggaggtc tcttcgaaat caggaaagga taaaccagta gctggaacaa       720
     aggacgccaa atcaattatg tcgacgtcat caagaaggtc ggagcggatg gtgttagaag       780
     tgcagctgaa gaaacttgaa gcagagcaaa cccttatgga agaagagatg aagaggaagc       840
     gagagttgtt ggagaggaaa ttcagtttgc tggaggaaat agccgaagtt gcatcgaacc       900
     gaagtgtacg ttcctgcgta gctgatgacc agcaagatcc agcggaaaag gtgtcatcgt       960
     ggttacagga ccaagaaacg gacgaaagtt catggtcaga cgattcaaga tcaacatccg      1020
     atacaagtga ggattcgagc gttgatgacg agacgagcga ggaagaatca tcacctggac      1080
     taccggaaga tgacagcgac gagagtgaag taccattcaa gccttgcaag caatcaacgc      1140
     caaaaggttc ctgtcgtcca aaagcaacat cggtggtcca gagcaaatca tgtcctgcac      1200
     tagtggcact cacaccggaa caaatagctg cccggcaagt tgttccacga gatttaccga      1260
     aattcagcgg aaacccggag gagtggccga tgttcttgtc aacctatgag aacacaacga      1320
     ggatgtgcgg ttatagagat gaagaaaata tgattcggtt acggaactgt ctgaaagacg      1380
     atgctctcaa cactgtccga agttttctca tgcttccttc gacggtacca aaggcaatca      1440
     gtgctctgaa gttacgtttc ggtcagcctc aagctatcat caatacgtta agagcaaagg      1500
     tactcggaat gtcaccgatt aaagcggatg cgatggacaa gctgattgaa catgcgttgg      1560
     cagtgcagaa cttgtgtagc acaatagatg cctgcgggag aaaggagtac aagcgagacg      1620
     ttaccttgct caatgagctt gttggtaagc tgccaccttc tctcaaactt gattgggcga      1680
     ggcatcaaag gaagttgaac aaggtaagct tgttcgctta cagcaaatgg atctattccg      1740
     tggcggagga tgcttgtttg gtttgtggca ctcagtctac tgaacagcaa gctcacagca      1800
     aaccaaaaaa caaagcgttc ttgaatacac attctaactt ttcaacttca gatgttccaa      1860
     gacagaaacc ttcggaatac cagtgctata aaccggaaaa gaagattacc gaagccgctt      1920
     ctatcaaatg ttgcgcggtt tgtaagggag gatgcaggaa tgctggaaaa tgtccgcggt      1980
     ttttagaact ttcctatgag gcgaggtggg ctactgttcg tgaacttcgc atatgccgcc      2040
     ggtgtctcag acaacacagc ggaaaatgtg atgctaagcc atgtggaaag aataattgca      2100
     ctttcaagca tcatgaactg ttgcataaag acttggcagt tacttctggg cccagcaacg      2160
     gtacaagacg acctttgcaa gaagaaacga acgtgaacac tcatttgtcg agctccgggg      2220
     taagaatgtt ccgttatctt ccggttacgt tgttcggaat caagaaacag attgattgct      2280
     atgcatttct ggatgacggt tcggaactga cattgattga tcaggactta gcaaaagatt      2340
     tagaagtgtc gggtaagtca gcgccacttt gtctgaaatg gactggcggg actcatcggt      2400
     ttgaagcgga atccctaagc gttgatgttg cgataagtgg acaatctgga aagaaatttc      2460
     tgctcaatga tgttcgcaca gttggagact tgcagttgcc ggctcagact ctcgatgtgg      2520
     atatgctgag agagcatttc ccatatcttc gcaacctacc ggtacaatcc tatcaggacg      2580
     tccgacccca aatcctgatc ggggtgaaac atgccaaggt agcacttgtc cgaaatagtc      2640
     gtgaaggcaa ggagggcgaa ccaattgccg ttaaaaccct actaggatgg acaatatacg      2700
     gtagttgcaa ccgcccagag tcgaagaatg tggtatttcg aacctatcac atctgcgagt      2760
     gtaatctgcg ttccgatgaa ggactgcatg acgcagtgaa gaaattcttc agcctcgaag      2820
     ctctaggtat atcgaaacca gaaaagaact gcgtatcaag tgaaaacgaa cgtgctcaaa      2880
     ctatgttgca ggcattgaca cgcttcgatg gtgaccgata cgaaactggg ctattatggc      2940
     gctacgagaa gattcgattg ccggataata agccgatggc attacagcgg ttcagctgct      3000
     tagagaagcg aatggaacgg gatcctgagt tggcgagtac attacatgaa aagattgctg      3060
     actatttggc taagggttat attcgtaaat tgactaccga ggaacttgag gagaaacaac      3120
     aacgagtctg gtatcttcca gtcttccctg tggttaatca gaataaaccc ggaaaggtgc      3180
     gtattgtctg ggacgctgca gcggcctttc acggtgtgtc gctgaactca gcgttactga      3240
     caggaccaga tgagctgact tccctaccag ctgtactgtg ccagttcaga aaataccgaa      3300
     tcggaatatg cggagatatc cgcgaaatgt tccaccaggt tcgaatacga ccggtggacc      3360
     aacactgcca acgatttctt tgtaggggaa ccgcagatca gaaaccggac acatacgtta      3420
     tgaacgtcat gacattcggc gcttgctgct ctccgagtac agctcagttc gttaagaacc      3480
     tcaatgcaga aaggtttaaa gaacaatatc cagcagctac cgacgcaata gtaaagaaac      3540
     attatgtgga tgatatgttg gcgagtgagg agacagagga agctgctatt gagctggcaa      3600
     aagccgtgcg gtttgttcac gcggaaggag gatttgagat aaggaactgg atatcgaatt      3660
     cacctcgtgt tctagcagaa ttgcgaagga atgacgaacg aactgcgcag aagaatctgg      3720
     acttgacagc ggagttggaa acagagaaag tcttaggaat gtggtggaac acagcaaacg      3780
     actgtttcac gttcaaggtt tcctggacac gttttgatga agctctgctc gacggaacac      3840
     gtcgtcctac aaagaatgaa gtactccgag ttctgatgac agttttcgac cctttaggtc      3900
     taatatcaaa ctatctgatg cacctcaaaa tcgttctaca ggaagtctgg cgctctggag      3960
     ttcaatgggg acagctgatc caagacaaac aatttgaagc gtggaaagct tgggtcaaac      4020
     tacttccttt actggaacaa gttagtttac cgcgttgcta tcgtaaggta acatcggccg      4080
     gctcagcaac ggaaatacaa gcgcacattt tcgtggacgc cagcgagaat ggtatggctg      4140
     cagctgttta tcttcgtttt gaagaagcag gccaaataga gtgcatgttg atgtgtgcaa      4200
     agactcgcgt cgcccctctt aaatatctct ccatcccacg actggagctt acagccgctg      4260
     taatcggaac gaggttgatc aacagcatga tgccagagct ggcgttgccg atatccaaac      4320
     gtttcttttg gtcggactct agaaatgtcc tatgttggct acagtctgac catcgccgat      4380
     acagcccata cgtagccgtg cggataagcg aaattttgga ttcaacggag gagtgggaat      4440
     ggagatgggt tccatccaaa ctcaacgtgg cggacgatgg aactaagtgg cagcgaagac      4500
     cggatctgag tgaaaccagc agatggttta gaggtccgga atatctgtgg cagcctcagg      4560
     aattctggcc tccaccgtca tataaagata gcactacaga ggaagaacta cgacctagtg      4620
     ctcttttcca ttgccatgca tcagaaccac tgattccagc aagccacttt tcaagctgga      4680
     aacgcctcgt gcgagtgaca tgctatgtaa aacgcttcgt aaccaactgt caacgtcttg      4740
     tgaagaagaa tggcattatt acgggcccat tttctagtga cgagctacag caagcagaga      4800
     tccatcaata ccgagctgca caatacgacg tctacgccga tgaaatagaa ctcctcaagt      4860
     cgaacagcaa ccataatcaa cagtgccagc aaatattgaa gagtagtgtc atctacaagc      4920
     tcagtccctt tttagatgca aatggtgtgc taaggatgaa agggagagtt gacgcctgcg      4980
     aatttctgct ggacgatgca aagaacccaa tcatcttgcc acgagatcat cctctcacac      5040
     gactagtgat catatactat cacgaaaaat tccatcatcg aaatcaaaga accgttttga      5100
     acgaggtacg acaacgcttc tgcatcgctc gcttgcgagt agctctcaag aaagttagaa      5160
     gcaattgtca acgatgcaaa aatcgagatg cgattccaaa gccaccggag atggcagacc      5220
     ttcccccagc cagattggct gcctatactc gtccgttctc tcatgtaggg gtcgactatt      5280
     tcggtccaat tgaggtcaca ttgggaagaa gggttgagaa gaggtggggg gtcttactaa      5340
     cctgtcttac tgttcgggcc gtacatttgg agattgccca ctcattgagc actaactcgt      5400
     gcattatggc actccgaaac ttcgtcgttc gacgaggtac tccggtgtcg ttctatagcg      5460
     acagaggcac aaattttatt ggagcagatc gagagttacg ggaagcactt aaaaccgtag      5520
     accaagagat gattatgaag gagttcacca gcccacaaac ggcttggcat ttcaatccac      5580
     ctgcctcgcc gcacatgggt ggcagctggg agcgattgat tcaaagtgtg aaaaggaatc      5640
     tgggagaaat cgtgggaaac aggcgtccta atgacgagga gctaagaaat gcgctgatcg      5700
     aagtggaagg agtgttgaat tcacggccgc taacagatgt accggtcgat gatgaatctg      5760
     cgccagccct gacacccaat cattttttgc ttgggtcgtc tgacggtgct aaaccgttga      5820
     cgctctgtag cgacaacctt gtggttagac ggcacggaca cgagctgtcc caagttatgg      5880
     ctaatcgttt ctggaaacga tggctacaag agtaccttcc agaaatcaca agacgtacta      5940
     agtggcatca gaaggtaaaa gcgattgaag tcggagatat agtggtgatt actgatccgg      6000
     aacatcccag aaactgctgg ccgaaaggtc gggtaatagg aacaaccaat agagacggac      6060
     aagtgcgtag agcaacgatt caaacgatga aggggatcta cgagagacct gccgttaaga      6120
     tagcggttct cgacgttaag agcgaagttg agtaagccga tcctgatgtc ggcatactgg      6180
     gggggac                                                                6187
//
ID   BEL-269_AA-LTR repbase;    DNA;    INV; 659 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-269_AA_;
KW   BEL-269_AA-LTR; BEL-269_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-659
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-659
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2547-2547 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 659 BP; 219 A; 108 C; 126 G; 206 T; 0 other;
     tgttgcgacc cctcggtgct acagcgctct ttcgacatct atacaagccg tacctactgt        60
     gaggacgtgg cgtgcgccca tggagcgcag atatgcaggg tatgacagtg acagaatagt       120
     ttagaagcaa tatcaacatt attgaattgg aaagtcattg tcgatctagc cagattgtgc       180
     tcatgcagtg gaaatcaaat agtagttatt cagttaaatt tagatgatta tcatgcaaat       240
     ttgcttagtc ttataaatat cacagtatgt atgggtggtt tatcttaaaa ttcaatttat       300
     tagtatctaa gtattccttc ttcagatttc atgcattaaa ctacatataa acctaaccat       360
     aaataactgt gaaagtaatt cgagctaaag gtaaaatcaa tggattgcat aaatgtcttg       420
     agattaatta aagctataat ttagacctca aagcgccagt ggagaccgcg aaaataaggc       480
     ttcaacaaac agaattgtct ttaacgtgag agagatttga ctaaacgtaa gtttttataa       540
     ttaggctaaa ttgtggatta aagcttattg aactatttca ggatattaaa actccaccaa       600
     aataaaggtt gttttgaaat ctcggaattt ctgttttctc tctgctgcgg aagacaaca        659
//
ID   BEL-26B_DTa-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   16-JUL-2021 (Rel. 26.10, Created)
DT   03-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26B_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-330
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5684-5684 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 330 BP; 82 A; 97 C; 70 G; 81 T; 0 other;
     tgttcgcgcc aaagcagcgc ttcccgtttc ttgggaaccg gccctggagt cttaacagcc        60
     gagagaacag tttcctccag atcgctcgca tctcgctctc tcgtactgtt aaggggtatc       120
     cactccgctc tccaggccgc tcctgaaact tccactccgt acctttaagt tagttctaat       180
     ttccaagtgt aaccgaaaag tcgaaagttg aagtcaataa atcgggaagt ttataaagtg       240
     aaacgaaaac atttcggccg tttgcattga cttctcggga tcggtaccac cacacaagcc       300
     ctactggaaa agcccgcccc cgccagttca                                        330
//
ID   BEL-26_AA-I repbase;    DNA;    INV; 5875 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AA_;
KW   BEL-26_AA-LTR; BEL-26_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5875
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 1555527 1561401.
XX
CC   Positions [4905-5489] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           624..5861
FT                 /product="BEL-26_AA-I_1p"
FT                 /translation="MMQSLEILGDRQALLTDKLLRMRETLREDISIHLLKL
FT                 HVETLRRIADDFEKVYSEMAALLTKEQREAMHEEYAKFEKMHNEVYVILQT
FT                 RIEQAQQQLKLEEFRNIPAPQTSSQAPVYVQAPAPHLQAPFPTFNGTLENW
FT                 YSFKSLFQSIMARYTNETDAMKILHLRNSLIGEAKDKIDQEVVNNEDYASA
FT                 WKILEDAYEDKRLIMDTHIDAILDCPKITKDNRGKSLSKLVEVCVKHTDAL
FT                 NGHGFPVEGLAELIIVNVLYKKLDKETQELWETSLGSGELPDFEEFVDFLR
FT                 ERGRVLQRTNRTQQPPAHQATAIPTKRQPGSQKPHAQVPSNSFVQVSKEMC
FT                 PCCKEEHLIYRCSKFQGMSLQERKGFVAKSKLCFNCLKAKHRVINCPSEQG
FT                 CKVQGCGRKHHSLLHCNDAPTVECPDKRQESEESSTASEVQPQQAPVQRSS
FT                 ATALYTNISGAKHHVVLSTAQVLVTGKGNSLVKCRALLDTGSDSNIITEKL
FT                 ADKLQLSMVPVDVPISGLNNNETRVKFLLATKFQSCTSSFASPKLDFLVVP
FT                 QITSNLPAVRIDARSWTIPSGLRFAAPTFHSPSGIDMIIGNEVFFDLIKGG
FT                 RVKLGTIGVTLAETQLGWIVAGSVPIKEEPSRRVCQLNRNEEMLNQTMSKF
FT                 WELECVYSDKSSTVTEELVEEHFKATHYREDSGRYVVRLPFNGIKSQLGDS
FT                 YDMARKRLNKLMLQLAKNPSKRGEYYKFLSEYLALGHMTEVAGSTCDGGYY
FT                 IPHHAVYKASSSTTKTRVVFDASAKTTTDLSLNDTVLVGPTVQNDIVSIII
FT                 RFCIHSVVLTADISKMYRQVRLHKDDCKYQRILWWNDDGQLKTYELQTVTY
FT                 GVASSPYHATSVLVQLAIDEGEDFALAKEIITEDSYIDDFLTGGSSSEEVI
FT                 QVYSELSELLRRGGFEVHKFCSNSNDVLGAIPEELQEQQVSFDDGGINNSV
FT                 KTLGLIWNPQADYFMFRATVADWKEVPTKRKVLSEIGQLFDPLGFLGPVIV
FT                 FAKLIMQDIWRLGLAWDEELPDDLQEKWHQFRRQLPALNQVQKPRCVIQSE
FT                 AVTLELHGFSDASKRAYGAVVYMRSITADGKIYVNLVASKSRVAPLKPTTI
FT                 PRLELCGAKLLAELVKKVITSMKIRLDAVRLWCDSQIVLCWLKKSPLALNQ
FT                 FVANRVAAIVDLTQSYQWGYVRSEENPADAVSRGELPEDLLQKNQWWSGAN
FT                 MLWEPQPILSEPELFDESMIPEVKSTVMMAAVRSDPPIVLNRLSSYKRIQR
FT                 AWVYVHRYIDIVMNKKKEFGEITADEIRMAEKSILLLVQRESYGDVLKALE
FT                 SKSVLRQPYRNLALFVDEDGLIRVGGRLKYSAIPYDGKHQVLLPQKHHITE
FT                 TIVRGLHQEHFHVGQNGLLAIVREHYWPVHAKQIIKKVVSSCQVCARQRPV
FT                 PGMQFMGNLPEVRVNPSPPFFKVGIDYAGPFMLKLGGRSTKLYKGYVVVFV
FT                 CLIVKAIHFELVSSLSTDDFIAALQRFSSRRGVPSDIHSDNATTFVGANHE
FT                 LAALKQLFEDQQHQLKVKEFCSAKGIRWHFIPPRSPHFGGIWEAGVKSMKY
FT                 HLKRVVGETRLTFEEMSTFLAQTEAILNSRPLCPMSDDPSDYSVLTPSHFL
FT                 IGRSGVALPVPSYGDEKLGRLDRYQHIQQMHQHFWSKWSREYLHHLQGRQK
FT                 WNTNANSSFKVGALVLLVEENLPPQQWKRGRISAVHPGDDDVVRVVTVRTT
FT                 NGDYKRAITKIAVMPSVETELSTGGV"
XX
SQ   Sequence 5875 BP; 1617 A; 1323 C; 1514 G; 1421 T; 0 other;
     ttttttggtc cgttctcccg gatcatcgga ggaattttga atggtttccg gcgttcgcga        60
     gtgattgatt agcaccgggt gctaattatt ttggcgcaag gccaaattac gcgttggtgg       120
     tgcttcgcca ccaaaagtga gtgcccgtgg cacaaggaat tggacggtcg ccatcttgac       180
     gaaaagctat tgccgaagca gattcggtag agtgcccgtg gcacgagaca tagtggtagc       240
     catcttggcg aaaagttgtc gaggtggctt cgacaacagt gctcgtagca gaaaatatag       300
     atcggtagcc attttggcga aaagcaaatg tcaaacggtt tgacattgcg cgtgtggatt       360
     cgacaccgtc gtgttgatta atagtgcgaa aacgctaaca ttgaaagtgc gcgagactcg       420
     tgtgtttgtg tagccaaaga aaaggctgaa gatcattcat gagtgaaagc gacacacccc       480
     gtggaccgtc gagcaaagtt aagcgaagga atatattcga cgagctcgcc gggtcgcaga       540
     atagtgaaga ggacgaaggg gatcgtatcc cgactattgc ccagcagaag gttgcacagt       600
     aggagttgaa cacaagacgc aggatgatgc agagtttgga gattttaggc gatcggcagg       660
     cgctactgac cgataagctg ctacgaatgc gcgaaacatt gcgagaggac atcagcattc       720
     atctactcaa gctacacgtt gagacgttac gccgaatagc tgacgatttc gagaaagtct       780
     attcggaaat ggcagccctt ttgacaaagg aacagcggga agcaatgcac gaggagtacg       840
     caaaattcga gaaaatgcac aacgaagtgt acgtgatact acagacgcga atcgaacaag       900
     cccagcagca gctgaaattg gaagagttcc ggaacatccc tgcaccccaa acatcctctc       960
     aggctccggt gtatgtacag gcaccagctc cacatctgca ggctccgttt cctaccttta      1020
     acggaaccct cgaaaactgg tacagcttca aaagcttgtt tcagagtatc atggctaggt      1080
     acacaaacga aaccgatgcc atgaaaatcc ttcatctccg aaattcactt atcggtgagg      1140
     ctaaagataa gatcgaccag gaagtggtta ataacgaaga ttatgcttcg gcgtggaaga      1200
     tcctagaaga tgcttatgag gacaagcgtc tgattatgga cactcatatc gacgcaatct      1260
     tggactgccc gaaaatcact aaggataacc gtggtaagtc cctatccaaa ctagttgagg      1320
     tttgcgtgaa acacacggat gccttgaacg gccatggatt tcccgtcgaa ggattggcgg      1380
     agctcataat agtgaatgta ctgtacaaaa aactggacaa ggaaacacag gagctatggg      1440
     agacaagttt gggtagtgga gagctacccg attttgaaga attcgtcgat ttcctgcgtg      1500
     aacgagggcg tgtactccag cgaacgaatc gaactcaaca gccaccagca caccaagcaa      1560
     cggcgatccc aactaagcgg caaccgggta gtcagaagcc acatgcgcaa gtaccttcca      1620
     attccttcgt gcaggtgtca aaggagatgt gcccatgctg caaagaggaa cacttgatct      1680
     atcgttgttc gaagttccaa ggaatgtctc tgcaggaacg aaagggtttt gtagcaaaat      1740
     caaagttgtg cttcaactgc ctgaaagcca agcaccgcgt catcaactgt ccatcggagc      1800
     agggctgtaa ggtacaagga tgtggtcgca agcaccacag tctactgcac tgtaacgatg      1860
     cacccactgt agaatgtcca gacaaacgtc aagagagcga agaatcatca acagcttccg      1920
     aagtgcaacc gcagcaggct cctgttcaac gcagcagtgc aacagctctc tacactaata      1980
     ttagcggagc taaacatcat gttgttcttt cgacagcaca agtgttggtt actggaaaag      2040
     gcaactctct cgttaagtgc cgtgcgttgt tggacactgg ttcggacagc aacatcataa      2100
     ctgaaaaact ggcggataaa cttcagttaa gcatggttcc agtggacgtt ccaatcagcg      2160
     gtttgaacaa caatgaaact cgtgtcaagt tcctgctagc aacgaagttc caatcctgta      2220
     ccagttcgtt tgcttcgccc aagctggatt tccttgtcgt cccacagatc acttcaaact      2280
     tgccagctgt gagaattgat gcccgttcat ggacgattcc ttccggatta cgttttgctg      2340
     ctcctacttt ccattcacca agtggaattg acatgatcat cggaaatgag gtgtttttcg      2400
     atctaatcaa gggcggtcga gtgaagctcg gtaccattgg cgttacccta gccgaaacac      2460
     aactagggtg gattgtagct ggctcggtac caatcaagga agaaccgtct cgccgagtat      2520
     gtcagctcaa tcgaaatgaa gagatgctaa accaaacgat gtccaaattc tgggaattgg      2580
     aatgtgtgta ctccgataaa tcatcgactg tgactgaaga attagttgag gaacacttca      2640
     aggctaccca ttatcgtgaa gattcgggac gttatgttgt gcgactgccg tttaacggca      2700
     taaaaagtca actcggcgac tcttatgaca tggctcgaaa acgtctcaat aagctgatgc      2760
     tccagctggc caaaaatcct tccaagcgtg gtgagtacta caagttcttg tctgagtact      2820
     tagctctagg tcatatgacg gaggttgctg gatcaacgtg cgatgggggg tattacattc      2880
     cccaccatgc tgtttataag gcttcgagct caacgacgaa aacaagggtg gtgttcgatg      2940
     cgtcggctaa aaccaccaca gacctctcgc tcaatgacac ggtattagtt ggacccacgg      3000
     ttcaaaatga catcgtatcg atcataattc gattttgcat ccactcggtg gtattgactg      3060
     ccgacatttc aaaaatgtac cggcaagtac ggctgcataa ggatgattgc aagtaccagc      3120
     gaattctctg gtggaatgac gacggacagc tgaagaccta tgaacttcaa accgtaacat      3180
     atggtgttgc tagttcgcca taccatgcca caagcgtctt ggtccaacta gcaatcgacg      3240
     aaggtgaaga ttttgctctc gcgaaggaga tcattacgga ggacagctac atcgacgatt      3300
     ttttgaccgg cggctcgtct agcgaagaag tcattcaagt ctattcagag ctatcagaac      3360
     tgctacgtcg tggtggcttt gaagtgcata agttttgttc gaacagcaac gatgttttgg      3420
     gcgccattcc tgaagagctt caagagcaac aagtcagttt cgatgatgga ggcatcaaca      3480
     acagcgtcaa gacgctgggt ttgatctgga accctcaggc agattacttt atgtttcgag      3540
     ctactgtggc tgattggaag gaggtgccaa ctaaacgtaa agttctgtcg gagatcgggc      3600
     agcttttcga cccactcggt ttcttgggtc ctgtaattgt atttgccaag ttgataatgc      3660
     aggacatatg gcgtctgggt cttgcttggg atgaagaact accggatgac ctgcaagaaa      3720
     aatggcacca atttcgccgg cagctcccag ctttaaatca ggtgcagaag ccccgttgtg      3780
     tcattcagag tgaggctgtt actctggagc ttcacgggtt ctcggatgcg tccaaacgcg      3840
     catatggagc tgttgtgtac atgcgaagca tcactgcaga tggcaagatc tacgtcaact      3900
     tggtggccag caaatctcgt gtggcaccgc tcaaaccaac aacgattcca cgactcgagt      3960
     tgtgcggtgc gaagcttttg gcagaactgg tgaagaaagt gattacgtcc atgaagattc      4020
     gtctcgatgc tgtaaggttg tggtgcgatt cccaaatagt tttgtgttgg ttgaagaaat      4080
     ctcctctcgc tctaaaccaa tttgttgcca accgtgttgc tgcaattgtt gatctaacac      4140
     aatcatatca gtggggttac gttcggtccg aggaaaatcc ggccgatgcg gtatcgcgag      4200
     gagaattacc agaagatctg ttgcagaaga accagtggtg gagtggtgca aatatgctat      4260
     gggaacctca acccatcctg agtgaacctg agttgtttga tgaatccatg attccggagg      4320
     tgaaatcgac tgtaatgatg gcagcagtac ggtcggaccc accgattgta cttaacagac      4380
     tgagtagcta caagaggatc cagagagcat gggtttatgt tcatcgttac atcgatatag      4440
     taatgaataa gaagaaggag tttggtgaaa ttacagccga cgaaatcagg atggctgaga      4500
     agtcgatttt attgctcgtt caacgtgaat catatggtga tgtcttgaaa gcgctggaat      4560
     caaaatccgt tctgcgacaa ccttacagaa atctggcgct attcgttgat gaagatggtc      4620
     ttattcgagt tggcggtcgc cttaaatatt cggccattcc gtatgacggc aagcatcagg      4680
     tactgttacc acagaagcac cacatcacag agaccatcgt aagaggacta catcaggagc      4740
     acttccacgt tggccagaat ggacttttgg ctatcgttcg agagcattat tggccagtgc      4800
     atgcgaagca gatcatcaaa aaggttgtat cttcgtgtca agtctgtgcg cgacagcgtc      4860
     ctgtcccagg catgcagttt atgggcaacc tccccgaagt ccgagtcaac ccatcaccac      4920
     cgttcttcaa agtgggaatc gactacgcag gaccgttcat gctcaaactg ggaggccgaa      4980
     gtacaaaatt gtacaaggga tacgtggtcg tatttgtttg cttgatcgtg aaggctatcc      5040
     acttcgagtt ggtttcaagc ttgtcgactg acgacttcat agcggcgtta caacgtttct      5100
     ccagccggcg tggtgttccg agcgatatcc acagtgataa tgccaccaca ttcgtaggag      5160
     caaatcacga gttagcagcc ctaaaacagc tgttcgaaga ccagcagcac cagctgaaag      5220
     taaaggagtt ttgtagtgca aagggtatcc gctggcattt cattcccccc agaagcccac      5280
     actttggtgg gatctgggaa gcaggggtga aatctatgaa atatcaccta aagagagttg      5340
     tgggtgagac acgacttacc ttcgaagaga tgagcacttt tctcgcccag acggaagcca      5400
     ttctcaactc gcgaccgtta tgcccgatgt cagatgaccc aagtgactat tccgttctga      5460
     cgccatcaca ttttttgatt ggccgttctg gcgtagctct tcctgtgcca tcatatggtg      5520
     atgagaaact ggggcgactc gacagatatc agcacatcca gcagatgcac caacattttt      5580
     ggagcaagtg gtctcgcgaa tatcttcacc atttgcaagg tcgccagaag tggaacacaa      5640
     atgcgaactc gagtttcaag gttggtgcgt tagtgctctt ggttgaggaa aatctgccac      5700
     cacaacaatg gaagcgtggg cggatttcgg ctgtgcatcc cggagacgat gatgttgtgc      5760
     gagtggtgac agtcagaacg acgaacggtg attacaagcg agcgataacg aagattgctg      5820
     tgatgccttc tgttgaaact gaattatcaa cggggggtgt atgaacagta aaaaa           5875
//
ID   BEL-26_AA-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AA_;
KW   BEL-26_AA-I; BEL-26_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 1555319 1555526.
XX
SQ   Sequence 208 BP; 64 A; 40 C; 32 G; 72 T; 0 other;
     tgagtaattt gttttaactt tcaatttctt ttcatttgat gtgttgcgac acaatgataa        60
     tttttgaatt caacccaaca ctgtactaac gaaaaattca gaaataaacc aaaccttgta       120
     tcgaacggaa gtatttttac gtttttcgat agtgtgccaa accatccgat tttcctgccg       180
     aaatctaagc ctgagctatc gttggaca                                          208
//
ID   BEL-26_AG-I repbase;    DNA;    INV; 6702 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   19-JUN-2012 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AG_;
KW   BEL-26_AG-LTR; BEL-26_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6702
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1438-1438 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [5718-6299] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1311..6662
FT                 /product="BEL-26_AG-I_1p"
FT                 /translation="MPGSPVPTTSAAFEEQDASHRVSHVQAASDSDHVQAN
FT                 PILRAAVAREASESEFEGFESVNSSPTFPTAAMLAEKRKRMRQHFDQRLDR
FT                 IDQALQHATRADAAFLKGCASRLSMLSTEYETWHTNNLVSSSNAQFEQEEE
FT                 EYASFENRHFELSLAIERNLSSSVVSTPTRDTMPHTKLPEMRLPTFDGKME
FT                 DWLPFRDAFLSLIDRNKNLADVDKLRYLKGSLQKDALNVVGDIEITDANYS
FT                 VAWEVLKSRFENKKLVVKRYLDGLFAIPHMKKESYESLISLIDSFERGVKM
FT                 TTRMGVATEGWSVLLAHMVCSKLDLATLKQWEIHHSSTNVPTYDEIMKFLR
FT                 SQATVLQAMAPDRNRTSEATTAGGRMKTRNEVYSVVKPATKVCSFCKRASH
FT                 AAYLCEVFRNASVEKRHELVRNGQLCFNCLSAGHQRKDCSSGSCRVCQRNH
FT                 HTMLHKPNSPIDQSSLASASSLPSTSNAEAATPASIVQHCARNNFEKIILL
FT                 PTAMVQVVNVDGTRIWARALLDGGSQINIVTERLVQLLRVQKRNEHHLLGG
FT                 IGKAQHSSHHSVSLAIHSHCSTFKASWKFHVLREVTWDQPAHAVNPEGLNL
FT                 PKGVTLADPHFYEPGPIDLLIGREGYNDLLLGNILRLNSPKLLLQNTELGW
FT                 IVSGQVSQGLTHSSLVLNVMTLNDQLSRFWELEGCYSPAMLSVEEAECEAA
FT                 FVQTTSRDHEGRFVVALPTRTERLNQLGDSYEAASRRLQSLCRRLNIDSKL
FT                 KQEYSKFLQEYLDLGHMEEIPSDRHDIGKTYYMPHHCVVRPDSLTTKLRVV
FT                 FDASSSTDTGVSLNDALMVGPSVQDDLLSLLLRFRVPRFAILADIEKMYRQ
FT                 IWVKESDRPLQRILWKESADDRIRIYQLKTVTYGTACAPYLATRCLQALAK
FT                 EGETRYPRASKVLEQDFYMDDMITGVESVEDGRIICSEINQLLQSAGFHLR
FT                 KWASNSSELLEQIPAELQIEGDVLNIDRSTSIKALGLRWMPSSDQLGFSVP
FT                 GWKESEIITKRIALSDAAKLFDPLGLLGPVIVVAKCFMQELWKNENTWDEP
FT                 LESERQQFWLRFREQLADLTSLTIPRRAIGGTVRIEAHGFSDASLRAYGAC
FT                 IYIRAESSDGQVSVRLLCAKSKVAPIPNTKRKKNVSLPRLELSGALLLSHL
FT                 WQKVKQGVKLELKINFWVDSTIVLHWLSSSPSRWKQFVANRVAEIQHQTYK
FT                 MPWSYVASEHNPADIISRGMMPLQLMDSQLWWQGPSWLHLPSQAWPTNKPN
FT                 TEISSEDLEERSIVATSQQVPPNFLFDLSSSYEKLVRLTAYLLRFMYNCQP
FT                 THRGNLRKGFLKIDELVSASLTLVRLAQQETFAEELRDVRQTGAVKPNSKL
FT                 KTLTPILKEGILRVGGRLRNAPVSYERKHPIILAFSHPLTLLIARSYHRQY
FT                 LHAGQQELISSLRERFWPLRVRNLARKVVYECVSCFRSKPTTAEQIMGDLP
FT                 SERVNPVLPFYNTGVDLCGPLFYRQTNKKAAPIKCYVAVFVCLVIKAVHVE
FT                 LIADLSTPAFISTLKRFIARRGKPSVIQCDNAKNFRGADRALKEMYELFQK
FT                 QQHQDAVTTYCGTEGITFNFIPPRSPHFGGIWEAAVKSLKRHLKATIGSSI
FT                 LRRDDLETILVQVEACLNSRPLTALSNDPEDLEILTPGHFLIQRALTSVPE
FT                 PSYAEIPGNRLDRYQQLQEYVRRIWKRWNRDYLSGLHPRTRWTSRRDNVRE
FT                 GTMVLLKEDNLPPLKWRFGRVLKIYPGDDGLVRVVDVKTKDGIYRRAITKI
FT                 CILPGQKEEREVS"
XX
SQ   Sequence 6702 BP; 1815 A; 1488 C; 1675 G; 1724 T; 0 other;
     ttatggtcct tcgtagaacc ggatagaatt ggctatcgag ataacgacaa ttcgttgcac        60
     acgggtgcat tagtggcagt gtattgtgcg tttgctgttt cgatactcgt agagagattg       120
     aggaagtgtg cataacggca gtgtattgtt cgcgcgagtg tcacagtgtg agttggacac       180
     taggacattc agtgtgcgtg taaaatagct gcgcgcgttc ggacaggctc atacttgagc       240
     atacgcatgc gttagatcgt gcacttcaca agtggcttaa ttgtgaagtc cagatacgca       300
     acatttggtg catcgagcgt tcaaagtgtg gaacgttttc ggtgagaagt gttgtgtagc       360
     ttcagtgcgg gagtgcaagt gtccccacaa accgagtacc tgacttccaa ttcgtggaac       420
     gtcgttggtg gtatcgtttg ttccagtgta ggtgcgcaag ttacctacac acgcacatcg       480
     agcgttttca atctgtggaa acgtggtcgg tgcgatacat tattgtgtgt cgtcgaaccg       540
     ctgccgttcg aattcacaag aaattaccag tgcaggtttg caagttcctg tacaaagcat       600
     atcgaacgtt ttcaatacgt ggaaacgtgg tcggtgccag ttattgtttc tgacggtcaa       660
     gcctcagtct tttggacgct tgttgaacaa tacattgttc aagtgttagt gaacattgaa       720
     ttcaaagttg tatgtttcaa gtgtaggtga gcaagttccc tatacacgta catcgaacgt       780
     tttcaatctg tggaaacgcg gtcggtacgg tatctttttg cttgtgatcg atcatcagtc       840
     gttcgaatac gcaagaagtg ttttcagtgc aaggaggcaa gttccctgct taaggcatat       900
     cgaacgtttt aattcgtgga aaacgtggtc ggtgctaaca aacgtattgt gaacaatacg       960
     gttcgcgcgc gttattcaaa cggagtgagc gtgtgcgcga gtgaacaatt ctctcttttc      1020
     gggttaagat aaaggttcgc gcgcgttatt caaacggagt gagcgtgtgc gcgagtgaac      1080
     aattctctct tctcgggtaa agcaaagttc cgcgcgtgtt aatccgagtg tgtgcgtgtg      1140
     tgagtgtatg cgaagaatac gatccgcgcg tgttaatccg ggtgtgtgcg tgagtgtgcg      1200
     aacaataaaa ccgcgtggtt tgaactaatt ctacgggtag tgtacgggac aaattgaact      1260
     attttacgaa cattcagtgt tgtgaaaagt gttttttgtt acaagtgaaa atgcctggtt      1320
     caccagttcc aacgacgtcg gcggcgtttg aggaacaaga cgcatcgcat cgtgtatcac      1380
     atgtgcaagc tgcatcagac agcgatcatg tccaagccaa tccaatactg agggcagccg      1440
     tggcaagaga agcttcggag agtgagtttg aaggttttga atcagtaaat tcaagtccta      1500
     cttttccaac agcagcaatg ctggcggaga aaagaaagcg aatgcgtcag catttcgacc      1560
     aaaggctgga ccgcattgat caagcactac agcatgcaac aagagcggat gccgcttttc      1620
     tgaaaggatg tgcgtcacgc ttgtcgatgc tatccacgga atatgaaaca tggcacacca      1680
     acaatttggt ttcttcttcc aatgcacagt tcgaacaaga agaagaagag tacgcctctt      1740
     tcgagaaccg ccattttgag ctttcattgg caattgaaag aaacttgtca tcaagtgtag      1800
     tttccacacc aacacgcgat accatgccac acacaaaact tcccgaaatg cgcttgccaa      1860
     cttttgatgg aaagatggaa gattggttac cgtttcgaga tgcctttctc agtcttattg      1920
     atcgcaataa gaatttagcc gacgtagaca agctacgata cttaaaaggc tctcttcaaa      1980
     aggatgctct taacgtagta ggagacatcg aaatcaccga cgcaaattat tctgttgcct      2040
     gggaagtatt gaaatcgcga ttcgaaaaca aaaagctagt ggtgaaacga tatcttgatg      2100
     gattatttgc gataccacac atgaaaaagg aatcatacga atcactgatt tctttaattg      2160
     acagttttga gcgtggtgtt aaaatgacga ctagaatggg agtggccacg gaaggatgga      2220
     gcgtgctctt agctcacatg gtctgctcta aattagacct ggccacactt aaacaatggg      2280
     aaatacatca tagctcaacc aatgttccca cgtatgacga gatcatgaaa ttccttcgca      2340
     gccaagcaac tgttttgcaa gccatggctc cagacaggaa tcgaacaagt gaagcaacaa      2400
     cagctggagg cagaatgaaa acccgcaacg aagtgtacag cgtggttaag ccggccacaa      2460
     aggtttgttc attctgcaaa agggcttcac atgctgcgta cctgtgcgaa gtgtttcgaa      2520
     atgcatctgt ggaaaagcga cacgagctag tgaggaacgg acagttgtgt tttaactgtt      2580
     tgtcggcggg tcatcagcga aaggattgtt cgtccggatc ttgccgtgta tgtcagcgaa      2640
     atcatcatac gatgcttcac aaaccgaatt ctccaattga tcagtcgtca ttagcatcag      2700
     cgtcatcact gccgtctaca tcaaatgcag aagcagctac accggcttct attgttcaac      2760
     attgtgcgcg caacaatttc gaaaaaataa tcctgttacc aacagcaatg gtacaagtag      2820
     tgaatgttga cggaacacgt atctgggctc gagctttact ggatggaggt tcacagatca      2880
     acattgttac ggaacgattg gtacagctgt tgagagtcca gaagaggaac gagcatcatc      2940
     tgcttggtgg aatagggaag gcacagcatt cgtctcatca ttctgtgagc cttgctatcc      3000
     actctcactg ctctaccttc aaggcaagct ggaagttcca tgtgctgcga gaagtgacgt      3060
     gggaccagcc agcacatgca gtcaatccgg aaggattgaa cctaccgaag ggagtgacgt      3120
     tggcggatcc tcatttctat gagccagggc caattgatct acttattggg cgagaaggtt      3180
     acaacgatct acttttgggt aacattcttc ggttgaatag cccaaaacta ctactgcaaa      3240
     acacggagct gggttggatt gtctcaggtc aggtaagcca aggtctaaca cactcttcct      3300
     tagtgctcaa cgtcatgacg ctgaatgacc aactaagccg gttttgggaa ctggaaggct      3360
     gctactcccc tgcgatgtta tccgtcgagg aagctgagtg tgaggcagca tttgtacaaa      3420
     caacttcacg agaccacgaa ggccgtttcg tggtagcctt accaacgcgt actgaaaggc      3480
     ttaatcaact aggtgactct tatgaagctg catcacggcg gctacaatcg ctctgtaggc      3540
     gattaaatat cgactcgaaa ttgaagcagg aatattctaa attcctacag gagtatctcg      3600
     atctaggaca catggaagaa attccatctg accgccatga cattggaaag acatattaca      3660
     tgccgcatca ttgtgtagta cgacccgaca gcctcacgac taagctaaga gtcgtatttg      3720
     atgcatccag ttctactgat acaggggtat ccctcaacga tgcactgatg gtgggacctt      3780
     cagtgcaaga tgatcttttg tcgttgttac tccgatttag agtacccaga tttgcgattt      3840
     tggctgacat tgaaaaaatg tatcgccaaa tttgggtgaa ggaatccgat cgtccacttc      3900
     aacgcatcct gtggaaagaa tctgctgatg atagaattcg catctatcag ctgaaaaccg      3960
     ttacgtacgg cacagcctgc gcaccttact tggccacccg ttgtctgcaa gcgttggcta      4020
     aggaaggaga aacaagatat cccagggcat ccaaggtcct cgagcaagat ttttacatgg      4080
     atgacatgat caccggtgtg gaatctgttg aagatggccg gattatttgc agcgaaataa      4140
     atcagcttct acaatcggca ggatttcacc tgcgcaaatg ggcttcaaac tcgtctgagt      4200
     tactggagca aataccagct gaactacaaa tcgagggaga tgttttgaac atcgatcgca      4260
     gcacatccat caaggctttg ggtttaagat ggatgccatc atcggaccag ctagggttta      4320
     gtgtgcctgg ttggaaggaa tcagaaatca tcaccaaacg cattgcgtta tcagacgcag      4380
     ctaagttgtt cgatcctctt ggactgttag gaccagtcat tgtagtagca aagtgtttca      4440
     tgcaggagct ctggaagaac gaaaatacct gggatgaacc tttggagtct gaacggcaac      4500
     aattctggtt gcgcttcaga gaacaactcg ctgatctgac tagcttgaca attccacgac      4560
     gagcaattgg tggaacagtg cgaattgaag ctcacggatt tagtgatgct tccctacggg      4620
     cttatggcgc ctgtatctac atacgagcag aatcgtccga tggccaagtc tcagtacggt      4680
     tgttatgtgc taagtcaaag gtggcaccga tacctaatac caaacggaag aaaaacgtgt      4740
     cccttccacg gctcgagttg tcgggagcgt tgttactatc acacttatgg cagaaggtga      4800
     agcaaggggt gaaattggag cttaaaatca acttctgggt tgattcgacg atagttcttc      4860
     attggctttc aagcagtcct tcccgttgga aacagttcgt tgcgaaccga gttgcggaaa      4920
     tccagcacca aacctacaag atgccttgga gttatgtggc cagcgagcac aatccagctg      4980
     acattatttc caggggaatg atgcctttgc agctcatgga ttcccaactt tggtggcaag      5040
     ggccctcatg gttgcatctt ccaagtcaag cttggcctac gaacaaaccc aatactgaaa      5100
     tttcctcgga agatttggaa gagcgatcga ttgtagccac atctcaacag gtaccgccaa      5160
     attttctatt cgatctttct tcatcttacg aaaaattggt gcgacttacg gcatatctgc      5220
     tgcgattcat gtacaattgt caaccgacac accgcggaaa tctacgaaag gggtttctaa      5280
     aaatagatga attagtgtca gcgtctctaa cgctcgttcg tctggcccaa caagaaacct      5340
     ttgctgagga gcttcgggat gttcgtcaaa ctggagcggt caagccgaac tcaaaactga      5400
     aaacgctaac acctattctg aaagagggta tcctacgtgt gggtggtcgt ttgcgaaacg      5460
     cgcctgtttc gtatgaacgc aaacatccga taattttagc gttttctcac ccattgaccc      5520
     tactgattgc gcgttcttat catcgacaat atctgcatgc gggacaacaa gagctcatat      5580
     ctagcctgcg cgagagattc tggccccttc gcgtacgcaa cctggcacga aaggtcgtat      5640
     atgagtgtgt aagttgtttc cgatccaaac caacaacggc agagcaaatc atgggagatt      5700
     tgcccagcga acgcgtaaac ccagttctcc cattctacaa caccggtgtg gatctgtgtg      5760
     gtccattatt ctatagacaa accaacaaga aggctgctcc aatcaaatgc tatgttgctg      5820
     ttttcgtctg tcttgtgatc aaggcagtac atgtggagct tattgccgat ttgtctactc      5880
     cagccttcat ttctacattg aagcgtttca tagctcgtcg cggtaaacca tccgtaatcc      5940
     agtgcgacaa cgccaaaaat ttccggggag ctgatcgagc gctcaaggag atgtatgagc      6000
     tgttccagaa acaacaacat caggatgctg ttacaactta ctgcggaacg gaagggatca      6060
     ccttcaactt catccctccg cggtcacccc atttcggtgg gatctgggag gccgcagtga      6120
     agtcgctgaa acggcatctc aaggctacga taggatccag tatcttgcgg cgagacgacc      6180
     tggaaactat cttagttcaa gtggaggctt gtttgaactc gcgaccgtta actgcacttt      6240
     ccaacgatcc agaggacctg gaaattctga caccgggtca ttttttgatt caacgggcgc      6300
     ttacatcggt ccctgagcca tcttatgctg agattccagg caaccgcctg gaccgctatc      6360
     aacaattgca ggagtatgtt cggcggattt ggaagcgatg gaatcgagac tacttgtctg      6420
     gtttgcatcc gcgtacccgg tggacttcaa ggcgagacaa cgttcgggag ggcactatgg      6480
     tcctgctgaa ggaggacaac cttccccctc tcaaatggcg cttcggccga gtgctgaaga      6540
     tttatcctgg tgatgacggc ttggttcgag tggttgatgt gaaaacgaag gatggaattt      6600
     acagaagagc catcaccaag atctgtatac tgcccggaca gaaggaagaa agagaggttt      6660
     cgtaataagg gttgaaagct acctttcaac ggggggcggc ta                         6702
//
ID   BEL-26_AG-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   19-JUN-2012 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AG_;
KW   BEL-26_AG-I; BEL-26_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-182
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1433-1433 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 182 BP; 61 A; 29 C; 41 G; 51 T; 0 other;
     tgttgagtaa tgaatttgta cggtataaac gtatgacctt ctgtcacttg aatttgttgc        60
     ttgggaattg tattgagggg acgaatgaag gaaacaagga ataaagaaag agtctagcgc       120
     aagcgttcaa tcagtacaga cgttcctctc tctaccagtt gagaaattca ctaactaaaa       180
     ca                                                                      182
//
ID   BEL-26_AnFu-I repbase;    DNA;    INV; 5972 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5972
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 677-677 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..5906
FT                 /product="BEL-26_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPKPGFDCAGCTRENAVADMVQCDECDRWWHFDCAGV
FT                 SSDVKDVQWVCERCENGEKDEIAEVKSHDPSGEPNRASRVKRSRSQDGESF
FT                 KPCPKKTLRAIPPQPAKESVSGKVVTPKRMAEKDEKVPDRMRSVDGHSRGS
FT                 VASSARKSNSSASTSLQLSRLKREQDLQVAALQADVEAQIAKLRLSYETKL
FT                 QQIEEYSESRRSGSSVSKNSKVMDWLSNHHVEDEPLSLHVSGRRSSSATSQ
FT                 QMPTTTVTTTAIERASARKIWRRKLPAFSGAAKEWPVFYSYYKESTEACGY
FT                 TSVENIMRLEEALTGPAREAVESKFTLPNAAPLVIKMLKQLFGRPALLVKE
FT                 LIEQARRAEAPKPERLDQLISFGIIVQKLCDHLTACEMEDHMANPELLEEL
FT                 VDKLPVSRALEWVDFKGRFRKATLKEFGEFMANLTMKCCELKAPVKLEVSR
FT                 VPAKSNRCHTLVHSTSCSESTDASHTKPLNETPNATQSSFKCFVCENPAHR
FT                 VRQCNVFKGMTAAARRDTAQRLKLCLNCLSNHGKNACKSKFSCGIAGCGER
FT                 HHTLLHQDSAAATPSSKQCHAHATESSQSLFRIVPVTVHHGHRSVDTYAFL
FT                 DEGSSLTMVEAALADQLCVSGVREPLEICWTGNIKRKEESSECVRLEISAR
FT                 GEERRYTIAAAHTIKQLSLPIQTIDPKLIMNLTYFQDLPTTPYQNAEPRLL
FT                 IGLQDVALMKPLEVRSGEEGGLIAVRSLLGWSIYGPHGDNIATPTAPFSVN
FT                 LHERATDTANPPNAASSQPQQVRTKDDEMCTVNCHADHMLHETLRQYFTLE
FT                 GTGVSSFSSNVPVCKEIARANHLLQSTTEKHNGRFTTGLLWADDEVCFPDS
FT                 LPMANKRLLALERKLEKDEHLQREVHDQVRMYLEKGFAHEASNEELLEASP
FT                 NRVWYLPINIVSHPHKPDKKRLVWDAAAKVNGISLNSKLLKGPDLLVQLPG
FT                 VLSKFRQRRVAFGGDIEKMFHQVRIQKRDTHSQRFLFRFSAKEHPKTYLMD
FT                 VATFGATCSPCSAQYVMHLNADHHKESYPEASAAIKQKTYMDDYFDSCDTI
FT                 EEAHERAKQVQFIHSQAGFNMRNWLSNEDKVLDGLQGFGGGQSKSIDINQK
FT                 ELFPRVLGLIWDTSTDTIKFATNWQDDLKPYASGERRPTKRIVLRIVMSLF
FT                 DPLGLLAPALIHGRIIMQDLWRSGLEWDSELSDLEYRKWQRWVGLLPGIQE
FT                 LSVPRWYFSCATTVDYNNIQLHVFTDASELGYGCVAYLRMESGANVHCSLI
FT                 MARSKVAPLKHLSIPRLELEAGLLGARLMRTVSESLDFEISQKYIHTDSEV
FT                 VLSWIRSPTRDLKQFVACRVGEILTLTELKHWRHVPTKENPADCLTKWCKE
FT                 TVIQSHGIWLQGPPFLYNPESAWPPQKPIQTTTEERRGYVMSHLTAEDVRL
FT                 YLDVTRFSKWSVLVRTIAIILRFVTNCRRKVKGLHLLTLKATKMQQACIKK
FT                 NIPSVHTPLSSEEYEQAENVLWRYTQEEFYPSEVRKLRDISRRGKPDEPVE
FT                 LNKNSPLYTLAPFADENGVLRMNSRICRARQIEYNARHPILLPKAHPVTKL
FT                 LVQDYHHRFGHANRETVVNELRQRFYIKHLRAYVSSVMKECQHCKIRKCQP
FT                 CTPRMAPLPEARLTPHIRPFSTVGIDYLGPLEVINARRKEKRYVAVFTCLV
FT                 TRALHLEVTHSLSTEACIMAIRRFVSRRGPPKEIYSDNGTNFIGANNELQK
FT                 QIAANNYSSAETFTDSHTTWRFNPPSAPHMGGVWERMVRSVKEAMNALNDG
FT                 GRLNDEILLTVLAESENLINSRPLTYMPQAPSDSEALTPNHFILGSSTGKK
FT                 ELVRTLPDPAEALRSSYKRATELTDHFWDRWLKEYVPNLHRRSKWIDEGEQ
FT                 LKVGSLVFVTEGARKEWLRAKVEEIFPGSDGRVRQAIVRTAYGKRLKRPVV
FT                 KLARVEAEIDRE"
XX
SQ   Sequence 5972 BP; 1725 A; 1388 C; 1576 G; 1283 T; 0 other;
     aagcttttta caaatttttc taagctttta agagaaaagc tttagtgagt ttgaagtgat        60
     aagtattcga ggaacgtttt ttcaaataac gcgcgaatat gccgaaaccg ggtttcgatt       120
     gtgccggttg tacccgcgag aatgcggtag ccgatatggt gcaatgtgac gagtgtgata       180
     ggtggtggca tttcgattgc gccggtgtat cgagtgatgt gaaggatgtg cagtgggtgt       240
     gtgagcggtg tgaaaacgga gaaaaggacg agatagctga ggttaagagc cacgatccca       300
     gtggggaacc gaacagggct tctcgcgtga aacgctcccg atcgcaggat ggtgaatcat       360
     tcaaaccgtg tccgaagaaa accctaagag cgattcctcc gcagccggcc aaagagagcg       420
     ttagtggaaa agtggtcacg ccaaagagaa tggcggagaa ggacgaaaaa gtgcccgacc       480
     gaatgcgaag tgtggacggc cacagtcgag gttccgttgc ttccagtgcg cgaaaaagca       540
     acagttccgc gtcaacgtcg ttgcagctaa gtcggttaaa aagggagcag gatctgcaag       600
     tagctgcact gcaagcggac gtcgaagcgc aaatcgcgaa acttcgatta agctacgaga       660
     cgaaactgca gcagatcgaa gaatacagtg aaagtaggag gagcggatcc agtgtcagca       720
     aaaattccaa ggtgatggac tggttgtcga accaccacgt ggaagatgaa ccactcagcc       780
     ttcatgtgag tggaagaagg agttcgtcag ccacctcgca acaaatgccg acaacgacgg       840
     taacgacaac agccatagaa cgagctagtg cgaggaaaat ttggcgcagg aagctacctg       900
     ctttctccgg cgcagctaaa gagtggcctg tgttctacag ctactacaaa gaatccacgg       960
     aagcgtgtgg ctacacctcg gtggagaaca taatgcggct ggaagaagcg ctgacaggac      1020
     cagcgagaga ggcggttgaa tctaagttca ctctaccaaa cgcggcgccg ctagtgataa      1080
     aaatgctgaa gcagctcttc ggccgcccgg cactgttggt aaaggaacta atcgagcaag      1140
     ctcgccgcgc tgaagcccct aagcctgaac gattggacca gctcatatcc tttggtataa      1200
     tcgtgcaaaa gttgtgtgac cacctaacgg catgtgagat ggaggaccac atggcaaacc      1260
     cagagctgtt ggaagagctg gtggacaagc taccagtcag cagagcgctc gagtgggttg      1320
     actttaaagg gaggttccgc aaggcaacgc tgaaggaatt cggtgagttt atggccaacc      1380
     tcacaatgaa gtgttgtgaa ctgaaagctc cggtgaaatt ggaagtgagt cgagtgccag      1440
     cgaagagtaa tcgttgtcac acactcgtgc attcaacctc ttgctccgaa tccaccgatg      1500
     cttctcatac aaagccgtta aatgagacac ccaacgccac ccaaagcagt ttcaaatgct      1560
     tcgtgtgtga gaatccagcg caccgcgtac gacaatgtaa tgtgttcaaa gggatgacgg      1620
     cagcagcgcg acgggataca gcgcagcgat taaagctttg cttgaactgc ttgagcaacc      1680
     acggcaagaa cgcttgcaag tctaagttca gctgtgggat cgcgggatgt ggtgaacggc      1740
     atcatacgct gctacatcag gactcagctg ccgcgacacc ttcaagcaag caatgccacg      1800
     ctcatgcgac ggagtcgtcg caatcgctgt tccgtatagt tccggttacc gtacatcatg      1860
     gccatcggag tgtcgacact tacgcgttcc tggatgaagg atcatcactt acgatggttg      1920
     aagcagcgtt agcagaccaa ctgtgtgtca gtggagttcg cgaacccctg gaaatttgct      1980
     ggaccggcaa tatcaaacgg aaggaggagt catcggagtg tgttcggttg gagatatcag      2040
     ctcggggcga agagcggcgc tataccatag cggccgctca tacaataaaa cagctaagtt      2100
     tgccaattca aaccatagac cccaaactga taatgaattt gacctacttc caggatcttc      2160
     cgaccacacc ataccagaat gcagagccac ggttgctgat tgggttgcaa gatgtggcgt      2220
     tgatgaagcc actggaagta cgatcgggcg aggaaggtgg tcttattgcc gtgcgtagcc      2280
     tgctgggttg gtcgatctac ggaccccatg gcgacaacat agcgacacca acagcaccct      2340
     tctcggtcaa cctccacgaa agggcaacgg acaccgccaa tccgccgaat gcagcttcaa      2400
     gtcaaccgca gcaggtgcgt acaaaggacg acgaaatgtg tacggtgaat tgtcatgccg      2460
     atcatatgct gcatgaaacg cttcgccagt attttacact ggaaggtaca ggtgtgtctt      2520
     cattcagcag taatgttccc gtatgcaaag aaatagccag agcgaaccat ctccttcaaa      2580
     gcacaaccga aaagcataat ggacgattca ccaccggttt gctttgggct gacgacgagg      2640
     tctgtttccc ggatagtctc ccaatggcta ataagcggct actagcgctg gaacggaaat      2700
     tggagaaaga cgaacacctg caacgagaag tgcacgatca ggtacggatg tacttagaaa      2760
     aaggatttgc acatgaggct tctaatgaag aactgctaga agcctctcca aatcgagtat      2820
     ggtacttacc tattaacata gtaagtcatc ctcacaaacc cgacaagaag aggctggtgt      2880
     gggacgcggc tgctaaagtg aacggcatct cactcaactc caagctgcta aagggcccag      2940
     atctactagt gcagctgcca ggggtactga gtaaattcag gcagcgacga gtagcctttg      3000
     gcggtgacat agaaaaaatg tttcaccagg tccgcataca aaagagagac acgcacagcc      3060
     aacggttcct gttccgattc agcgcaaaag aacatcccaa gacgtattta atggatgttg      3120
     cgacgtttgg ggcaacttgt tcaccgtgtt cggcccagta tgtgatgcac ctgaacgccg      3180
     accaccataa agagtcatac ccagaggctt ctgctgcgat caagcagaaa acatacatgg      3240
     atgactactt cgacagctgt gacacaatag aagaagcgca tgaaagagcc aaacaggttc      3300
     agttcatcca cagccaagct ggatttaaca tgcgaaattg gttaagcaac gaagataagg      3360
     tgctcgatgg gttgcaagga tttggtggtg gtcaatccaa atcgattgat atcaaccaaa      3420
     aagaattatt ccctagggtc ctaggcctga tttgggatac atcgacggac acaataaagt      3480
     ttgctaccaa ctggcaagac gatttaaaac catacgcgag cggtgagcga agaccaacga      3540
     aacgcatagt gctaagaatc gttatgagct tgttcgaccc gcttggccta ttagctccag      3600
     cattgatcca tggtcgcatc atcatgcagg atctgtggcg atctggttta gagtgggact      3660
     cggaactaag tgacctggag tatcgcaagt ggcaacgctg ggtcggattg ttacctggca      3720
     tacaagaact aagcgttcct aggtggtact tctcttgcgc tactacagtt gattacaaca      3780
     atattcaact gcacgtgttc acagacgcca gtgaacttgg atatggttgc gtagcctact      3840
     tacgtatgga atcgggtgca aatgtccatt gtagtttgat aatggcaagg agtaaggtgg      3900
     ctccactgaa acatctttcc atcccgcgtc ttgagttgga agcgggtttg ctcggcgcaa      3960
     ggctgatgcg caccgtaagt gagagtttgg actttgaaat ctcccaaaaa tatatccaca      4020
     cagactccga agtggtcctg tcttggatac gttcgcctac aagggatctt aaacagtttg      4080
     tagcatgccg agttggcgag atactcacac taacggagct aaaacactgg agacacgttc      4140
     cgaccaaaga gaatccagca gactgtctca ccaaatggtg taaggagaca gttatccagt      4200
     ctcatgggat ttggctacaa ggtccacctt ttctatacaa cccagaaagc gcgtggccac      4260
     cgcagaaacc catccaaaca acaacagagg agcgacgtgg gtatgtgatg tcgcacttaa      4320
     ctgccgaaga tgttcggctc tatttggacg ttacgcgttt ctctaagtgg agcgttctgg      4380
     tacgcacaat cgccatcata cttcgttttg tgacgaactg cagacgaaag gtcaaagggc      4440
     tacacctgtt aacactgaag gcaaccaaaa tgcagcaagc ctgcattaaa aagaatattc      4500
     cctctgtgca tacccctctg agttccgagg aatatgaaca agccgaaaac gtgttgtgga      4560
     gatacacgca agaagagttt tacccatcag aagtgcgtaa attgagagac attagccgaa      4620
     ggggcaaacc agatgagcca gtagagctga acaagaacag ccctttgtac actctagcac      4680
     cgttcgcaga tgaaaatggt gttctgcgca tgaatagtcg gatatgtcga gcaaggcaaa      4740
     tagaatacaa tgcgcggcac ccaatcctac tgccgaaagc acatcctgta acgaagctcc      4800
     ttgtacaaga ttatcaccac cgattcgggc acgccaatcg cgaaaccgtc gtgaatgagc      4860
     tgagacagcg gttctacatc aagcacttac gcgcctacgt ttccagcgtg atgaaagaat      4920
     gtcaacactg caaaataaga aagtgtcaac cttgtacacc cagaatggca cccctacctg      4980
     aagcgagact taccccacat atccgtcctt tcagcacggt aggcatagat tacttgggtc      5040
     cattagaagt catcaatgcg agaagaaagg agaagcgata cgttgcagtt tttacatgcc      5100
     tggtgactag agcgttgcat ttagaagtta ctcacagttt gtcgacggaa gcttgcatca      5160
     tggcaattcg gcggttcgta agtcgtagag gtccgccgaa agagatatac tcggacaacg      5220
     gaacaaattt catcggagca aacaacgagc tgcaaaagca aatagcagca aacaactact      5280
     cgagtgcaga aacctttacc gactcacaca ccacctggcg cttcaatccc ccttcagcac      5340
     cacacatggg aggagtttgg gagcggatgg ttagaagcgt gaaagaggcc atgaacgctc      5400
     taaacgacgg tgggaggttg aacgatgaga tactgctgac cgttctagcc gaatccgaaa      5460
     acctcataaa ctctcgtcct ttaacctaca tgccccaagc gccttcggat tccgaagcgc      5520
     tgacacctaa tcactttatt ttagggtcct ctaccgggaa gaaggaattg gttcgtactc      5580
     taccagaccc ggccgaagcg ttaagaagta gctacaaaag agccaccgaa ctcactgatc      5640
     acttctggga tagatggctg aaagagtatg ttcctaatct tcaccgacga agcaaatgga      5700
     tcgatgaagg agagcaacta aaagttgggt cattggtgtt tgtaacggaa ggggcgcgta      5760
     aagagtggct gagagccaaa gtggaagaaa tcttccctgg ttctgatgga agagtcaggc      5820
     aggctatagt gaggactgct tacggcaaac ggttgaagcg gccagtagta aaattagcca      5880
     gggttgaagc cgaaattgat agagagtagg ttgatagtcg tgtactttgt ttgttagtga      5940
     atccaaaccg catggattca cgtgaggggg ga                                    5972
//
ID   BEL-26_AnFu-LTR repbase;    DNA;    INV; 394 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-394
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 730-730 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 394 BP; 144 A; 80 C; 95 G; 75 T; 0 other;
     tgttgacacg acatcaacat gtcaaagcga catgacagaa gcggaagatc gatcaagcga        60
     tgatcgatcc tgcttaaacg gtaatcgaaa aacatcgcac ggatgagaga gcgaacaaat       120
     ctctccgtaa cagggatcgg cacgtgaggt caacgtgcca cgctcgtgtg ccgagtgtcg       180
     gtacaaatcg cagcacgcgc aaagatatgc ccttataagg aagtggaaaa aatgcagcag       240
     atgaggagca atgcggaaag agaaaaatta gacttaggtc agaagcaatt agaacgccaa       300
     agaagacagt gccaaatttg taaaaagtag gaaaatatat gataatatat tacccgctca       360
     acaaagctaa aatcgtttgg cctttgcttc caca                                   394
//
ID   BEL-26_CQ-I repbase;    DNA;    INV; 4188 BP.
XX
AC   AAWU01010404;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_CQ_;
KW   BEL-26_CQ-LTR; BEL-26_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 205-205 (2011).
XX
DR   GenBank; AAWU01010404; Positions   27568   23381.
XX
CC   'CTCTG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           809..3880
FT                 /product="BEL-26_CQ-I_1p"
FT                 /translation="MDHKFIVNPNGRCRSCTNLDDQHMLMCSHCDRFFHLQ
FT                 CVGLGRMPNKNENWHCIKCDAVAKTLQSFDQKVKQLEKSIEDVSTKPSTEN
FT                 KDILTCQFLQGIVNKLEGLSVQPRTADSFLFRQTLIDLPKFNGSFKDWPKF
FT                 KQTFFETTKLGNFSDIENLNRLEKCLKGEALLRVNSLLSDSSNVSKIMNVL
FT                 EERFGSIEQIYNGLMNDIIKVRNPSYDNPKSMVDFISAIGDLVINMESLHH
FT                 EEYLNDPRLVRDLMKKLPSGLQNQWLDNINEEKTLSSPTNPYKAPTIKDFY
FT                 TFLKPKEKVAIAKLVDSDSSNSRTKSERILYAQDTCKTSCIKCNLNSHKLI
FT                 QCNEFKNLTPEEKQTFVMEERLCFSCLGANHLAKQCRFAKDCNIEGCKSKH
FT                 NRLLHVKRTENTDSEIEDSGNEHSVNCHVKKYNNVFYQIVPVTLINGSNKK
FT                 ETFAFFDSGSSVSLINAKTAVELQAKGAKRSMTLAWTNGETQEDLNSMSVQ
FT                 INIQALNGRKFNLKDLRTVNDLKLPTQSLDTNRLKKQFPHLQGSKLASYNN
FT                 AMPTLLLGLPHAYLFKSIKELSGKFNEPIGRMTKLGWVLFGRSNFGKIKKN
FT                 HLFTIQEVKKNLVSKEDAHENYSQRAKEQFGQISVREFYQDKKDEESEALQ
FT                 NQAIIVGAISPINCVQKLTNGENIKKVHILNDQHKENLDDLKTETKCVLYT
FT                 CDIPIKLNFKMTCLKFDIKLIKQYLPIVMNFPIKEINIYGQKHDDNNRRCT
FT                 MWNENDSIFSINKETKLQPKVNSDRCELKNVIFPANDTDINFNEKSRFKNI
FT                 DIVIPENNVLVQNSLNINSEIIGTNFFKKKEFNKASNTTTQTTMINSASSS
FT                 VLNSTKYTKRNYLAYVGSLYDPHGLILHIKKHANIVLKDIWYSSAHWDDCV
FT                 PAEIMYKWQVWIAQLSSFKNLSNLEPNENNIIKRQINVYFGNNHKAFIRVQ
FT                 SFCDKNIIKTTTRLVKSNIETEVNISTPRSEIHDYMFKTKLSNTILKSHTF
FT                 GTNQVTFRSDSKRITLEK"
XX
SQ   Sequence 4188 BP; 1663 A; 670 C; 759 G; 1096 T; 0 other;
     tggtggctct gcagagagga ttaggagaag tgcttgtcgg aatcaagcac tgaggactcc        60
     gagcttccgg tcagtcgaaa tctgatcgtg atcgtaagta aaagcgtgtc cgacgctata       120
     gagcggacaa gtgatcaagt gtgagcagtg tcaggctcag ttagtgcaga cgaattatcg       180
     tcaagagtgt aaaagcgtct ccgacgctct agagcggtca agtgaccaag tgtgagcagt       240
     gtcaggctca gatagtgtag acgagttatc gtcaatagtg aataatcctg gacaatagtc       300
     cagaagaaca ccgtgagcga tcctgggcaa gaacccagaa gaagaagaaa acaagaagaa       360
     ccttttaata ggtgattcaa cattaaacgt cgtcgattaa actctacttc aagtaaaggg       420
     aagactggat gaaaatccag agatccgctt ggttgcagaa aatcaccaaa aaatagtaaa       480
     aaaaaaaaaa aaaacccttt taatagatag gtgatttcaa gaagtgaagt gagtgattaa       540
     aggaagacta gaaacacata tatataaaaa atatatatat ataataaagg aataaaaact       600
     gtaagattgc aaagcagatt tagtgcaaag tgagtgaaaa aaatatataa aaaaaaaaaa       660
     tataagaagt aacacagtga cgtcgaacat cgaagctaca tcaacgaagc ctaaggaggc       720
     tcgagaagta ccacaagcaa cgtcgaacca gggaacatcg agcatcaagg atcgacgaag       780
     catcatcgaa cataaggtat ttagaaatat ggatcacaaa ttcatagtga atccaaatgg       840
     taggtgcagg agttgcacca atcttgatga tcagcacatg ctaatgtgca gtcattgtga       900
     tcggttcttc cacctgcaat gtgtaggact tggccgtatg ccaaataaga atgaaaactg       960
     gcactgcatc aagtgtgatg cagttgccaa gactttacaa agttttgacc aaaaggtcaa      1020
     acaattagaa aaaagtattg aggatgtttc aactaaaccc tcaacagaaa acaaagatat      1080
     attgacttgc cagtttttac aaggcatagt caataaatta gaaggactgt cagttcaacc      1140
     aagaactgca gattcatttt tatttaggca aactttaata gacttgccaa aattcaacgg      1200
     ctcttttaaa gattggccaa aatttaaaca aactttcttt gaaaccacca agcttggtaa      1260
     tttctctgac atagagaact taaaccggct tgaaaaatgt ttaaaaggag aagctctact      1320
     tagagtcaac tcccttttat cggattctag taacgtcagc aaaattatga acgttctaga      1380
     agagcgattt gggagtattg aacaaattta caacggatta atgaacgata ttataaaagt      1440
     tcgtaatccg agttatgata acccaaaatc catggttgat tttatatcag ccatcggaga      1500
     tttggttatt aatatggaga gtcttcatca tgaagaatat ttaaacgatc ctcgactagt      1560
     tcgggatcta atgaaaaaac ttccatctgg tcttcagaac caatggttag ataatataaa      1620
     cgaagaaaaa acgctatcat cacctaccaa tccttataaa gctccaacga taaaagattt      1680
     ttacactttt ctaaaaccaa aagaaaaggt agccatagca aaattagtcg actctgatag      1740
     ttcaaattca agaactaagt cagagcgaat tctctatgca caggatacat gcaaaactag      1800
     ctgtatcaag tgcaacttaa atagtcataa attgattcaa tgtaatgagt tcaaaaattt      1860
     gactccagaa gaaaagcaaa catttgtaat ggaagaaagg ttatgcttct cttgtttagg      1920
     tgcaaatcat ttggcaaaac aatgtcgatt tgcaaaagat tgtaacattg aaggttgcaa      1980
     aagcaaacac aatcgtctac ttcatgtgaa gcggacggaa aatactgatt cagaaatcga      2040
     agactcggga aatgagcatt cagtgaattg tcacgtcaag aaatataaca atgtattcta      2100
     tcaaatcgtt cctgtgacgt taattaatgg aagcaataaa aaagaaacat ttgcattctt      2160
     tgattctggc tcatccgtca gtcttataaa cgcaaaaaca gcggttgagc tccaagccaa      2220
     aggggctaag agatctatga cgttagcatg gacaaatggt gaaactcaag aagatttaaa      2280
     tagtatgtct gttcagataa atattcaagc attaaacgga agaaagttta atttgaaaga      2340
     tttacgtaca gttaatgatc tgaaattgcc aacgcaatct ctggacacaa atcgccttaa      2400
     aaaacaattt ccccatctac agggtagtaa gctggcatcg tataataacg ccatgcctac      2460
     attactgcta ggtttgcctc atgcatacct atttaaaagc attaaggaat tatcaggaaa      2520
     attcaatgaa ccaattggca gaatgaccaa attagggtgg gtcctgtttg gaagaagtaa      2580
     ttttggaaaa atcaaaaaga atcatttgtt tacgattcaa gaagtaaaaa agaatttggt      2640
     atctaaagaa gatgcgcatg aaaattattc tcaacgtgca aaagaacaat ttggtcaaat      2700
     ctctgtaaga gaattttatc aagataaaaa ggatgaagaa tcagaagctt tgcaaaatca      2760
     agcaataatt gtaggagcaa tcagcccaat taattgcgta caaaaactga caaacggaga      2820
     aaatataaaa aaggttcata tcttgaatga tcagcataag gaaaatttag atgatttgaa      2880
     aacagaaacg aaatgtgtct tatatacatg tgatatacct attaaattaa actttaaaat      2940
     gacatgtttg aaattcgaca taaaattgat taaacaatat ttgcccattg taatgaattt      3000
     tccaataaag gaaataaata tttatggtca aaaacatgac gataacaaca gacgttgtac      3060
     gatgtggaac gaaaatgatt ccatattttc aattaataaa gaaacaaaat tacaaccgaa      3120
     agtaaattcg gatcggtgtg aattgaaaaa tgtaattttt cctgcaaatg atacagatat      3180
     aaatttcaat gaaaaatctc ggtttaaaaa tattgacata gtaattccag aaaataatgt      3240
     attagttcag aatagcttga atataaattc tgaaattata ggtacaaact tttttaagaa      3300
     aaaagaattt aataaagcat cgaacacaac cacacaaaca acaatgataa actcagcgag      3360
     ttcaagtgtt ttaaattcaa cgaaatacac taaaagaaat tatttggcct atgtgggtag      3420
     tttgtatgat ccacacgggc ttatcttaca cattaaaaaa catgcaaata ttgttttaaa      3480
     agacatttgg tacagcagtg ctcattggga cgactgtgtg cctgcagaaa ttatgtacaa      3540
     atggcaagta tggatagccc aactatcatc attcaagaat ttaagcaatc ttgaacctaa      3600
     tgaaaataat ataattaaaa gacaaattaa tgtgtatttt ggaaataacc acaaagcttt      3660
     cataagagtt cagtcctttt gtgataaaaa cattatcaag accacaacca gattggtaaa      3720
     atcaaatata gaaacagaag taaacatatc aacaccgcga tcagagatac acgattatat      3780
     gttcaaaaca aaactttcaa atactatttt aaaatcacat acattcggaa ctaatcaagt      3840
     cacgtttcgg tccgattcaa aacgaattac tctggaaaaa taaacaacaa tgagatattt      3900
     aaaactaaaa ctaaaaagca gatagattta aatcattttc aaacagcaaa taatcaagaa      3960
     aaaatcattc aaagaacgca atggcgttat gtgaacaaca acagagaaga acgtaacaac      4020
     acgaactggt ttaaaggtcc aggttttcct atatagaatt ttataaaaac ccgataatac      4080
     tcagagttat atttttataa aagtgcaata aacaaaacaa aaagaaaatc agataaagtt      4140
     cgcggcttcg aaaatttgta aaccaaggat gctttacggg ccctggaa                   4188
//
ID   BEL-26_CQ-LTR repbase;    DNA;    INV; 629 BP.
XX
AC   AAWU01010404;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_CQ_;
KW   BEL-26_CQ-I; BEL-26_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-629
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 206-206 (2011).
XX
DR   GenBank; AAWU01010404; Positions   23380   22752.
XX
SQ   Sequence 629 BP; 205 A; 129 C; 119 G; 176 T; 0 other;
     tgttaccacg cgaacagata gatgttttac ttttcacctt tcaaagaatg gtagcaaatc        60
     agataggaaa ataacagaaa atgctcactt atttgcatac aaatgttttg tgctcttact       120
     tgagaatcat aacgttagaa ttaggacagg taaatttctc atagtttaat gggacttata       180
     agaatcacgg gtagctacag tgagtcttcg tagaagcaaa catatgcgaa agaattatga       240
     gtatccgtat cacccatgtg tatgaaggat gactgtgcag gtccaggtag tatgtgaaag       300
     agagatacaa ctagatttgc ctacctatct cgttctgcct aacatcaagg attagtttta       360
     aatcatatac atcaataatg caacacgtag ctttaagttt atattgtaca ttaaattcca       420
     aataaaccaa gttcggagat cactcccaaa aacaactgtt ttacttcagt caatttgaga       480
     actcctcatc ctcgtattgg aacgagcagc ctccagcagc cagcagtctt cagcagtcac       540
     ccgggatcag caccagcagt tctacttgga gtcgtcggca gccagagcgt aagttccgca       600
     aattaaaaac gtacccacgc gtttttaca                                         629
//
ID   BEL-26_DEl-I repbase;    DNA;    INV; 7208 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   01-JUL-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_DEl-I;
KW   BEL-26_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7208
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7046-7046 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 7208 BP; 2695 A; 1209 C; 1582 G; 1694 T; 28 other;
     tctttgctca tgtagactgc caaaccgatc ggtatacttg acggtatcca cggtagaaaa        60
     gtccgcaagg cgcacttaac ggtgcactac ggcaagatta ggaaaacaaa aataaataaa       120
     tcgacgattg caacctaaga ctgctgcgtg ggacgaaaag gcggttaacg tgagaaagat       180
     caggatcaag cgacagagtg cggcctttta aggaggcaac tgcggacgct tgaatacaga       240
     gctgcaacgg cgtgggaaat ccactcaacg aggagcaagt gcagaaccgc ggctaaaatt       300
     gcaacgacgg gggaaatcca tgcaagtgca ggaccgcggc taatacaccg agagttatcc       360
     acaaatatac cgaaatcaag tgtcggaccg cggcttacac atcggcaagc gacagcggag       420
     gcttgaataa atctataacg gcgtgggagg tccacgaaat aatacgaatc aagcgtcgga       480
     ccacggctaa taggatagcg tcagtggagg cttggtgcaa agaaaaaatc accacatcgg       540
     cgaggcgaca gcggacacgt aagaagcgta atccacggca gagtcaccat tagatggaag       600
     agtttcatca gaaatttaaa cgagtattgg aaaaggcgca ggatttctgg gaagcagcgg       660
     tgaagaaagg agcaggacca caaccattga cgatcgagga gtacaaggcc cgacaaaaga       720
     agtcccgacc aactcaggaa agaagaaaaa atccaaaaga tctggaaaga agaagcagaa       780
     aaggcggaaa acaaaagaat tgtataggct tatcaacctc tcaacagggg aatataagaa       840
     acaattgttg aaagaattag aattgttaag aaataaatcc actaataaat aaatagtaaa       900
     atggtacaca gaagagaaac acttaatgct ctggcggcta gtcaatcagc catatatagc       960
     cagatgaaga aatgggaaga agatgtcagt caaatagaaa ggtccgattt gaaattccta      1020
     tctgaagtac agagtcaatg ggaattattc aaaagtcagc atcaggagct gttggcaaac      1080
     gcatcagcgt tcacaggaga ctacttctca aaagatgggt atggaaaaac acaagcccta      1140
     aaaaacaaca ttttggcgga atttaataag aagtcggccg aggaaacaat gaactactcg      1200
     atgcaacaat tggttgggga tcaggaaatg cgcttacacg agtacaacca agcaagacaa      1260
     gcgcttcatg gaactttgga aactgcgggc caagacccga aactacaact acatatatga      1320
     aatatattga ggaagatttt cagcggctta ctgaaaatct aagagaattt aaaataaatg      1380
     gacaaattac cccaacgatt ttagaggggt gtgasaagat aaaaatggaa aaaggaaata      1440
     aagaaatttg gatgcaacag aataaattcg aagaacgtcg agtttctgtt agggagatgg      1500
     agattcccgc attttttgga gacatttccg catggtcggg attttttgac atgtttaagg      1560
     aaatggttga cagcgatgaa atgatgaagc ctaagatgaa actaatgcga ctgaaggaag      1620
     ttgtaaaggg tgaagcatca tatttgataa agcatctgct gatatgtgat gaaaattata      1680
     aaatagcttt ggatatttta aaaaatagat acgagaacag acgtcagttc tttatgaaaa      1740
     attttcatca aactcttgat ttgcctatka tgaacagcga akcagaaaga agtkttttaa      1800
     acatgmtgga cacagcgcaa aagtgcactc atgccatcaa gggcatgggt atcgcattag      1860
     atgacaccga tgttttcatc gctggaatat tactgaggaa atttgatcga caaggacaac      1920
     aacaatacga acattcttcg aaaacaacaa aaggggtcca gacgcttaaa gatgtgttgg      1980
     aatttttgga gaaacatctg caagccataa aagcagtaag gcagcccaga cacatgaccc      2040
     gagaaactcc gagagtattg gctgcggtta tgagtggcaa ctgcccatac tgtaaaactc      2100
     cagggcataa attacaagat tgcattaaat tttgtcaact ggctattacg gaaaagtgga      2160
     attttgttcg tcgagaaagg atttgtttca agtgcttggg ccacaaatat accctttaca      2220
     aggtctgtca agtggaacaa ggttgttcgc agtgtggtag accccatcac gagttgttac      2280
     atggacaaga agaaactaaa gcaactctta tatcaagaac gggaaaaaca accttgttgg      2340
     ccacagcgca gattgaggtc caagatgcga gtggagcatg gataaccctt cgagcattag      2400
     tggaccaagg atctcaaatt actgtcgttt ctgaagaagc agttcaaatg ttaaaagtac      2460
     ccaaaaagaa aaagagaacc caaatatatg gattaggaga aagtttggtt gggttatcaa      2520
     aagcgtcgat ccagctaaaa attcgtccaa gattttccag caatgatcga tttgagaccg      2580
     aagcagtggt tttaacgaag ttattaagcc cacaaccgcc gcaatcattt gagtatgata      2640
     tgcgaaaatg ggaagataca accttggcgg acccgacctt taacaagcgt agcaggattg      2700
     atgtgctgat aggaggagat ctcttagccg aaattattac tcaaggattg aagcaggaag      2760
     aaaccatgat tggtcaacgt actaaactag gatggatttt atcaggaatg gtgcaaatac      2820
     cgggtagtaa gcgcattcac tcggcagtca atttkgagaa attttgggaa ttggaagaag      2880
     ttccagaaac aataaccata acagataatg agaaatgtat ggaattatac gaaaaaacga      2940
     cgatgattga tgtcgacggg cgttttgtgg tcaaaatgcc cttggtggaa aataaagagt      3000
     tgggagaaaa gcagtggccg aatataagtg gaaaagaagt ttggaaaaga tacaaaatta      3060
     aggcaacaat attcggaatt catggatgat tatatacgac aaggacacat ggaggaagca      3120
     gaggtcgatg atgtaggaaa atattatatt ccccatcaac cggttataag agaggatagt      3180
     cttactacta aacttcgggt ggtgtttgac gcatcgtcaa aaacaacaaa tggaaaaagt      3240
     ctaaatgata ttmaattgac tggaccacac attcagaagg ctatattgga aataattatg      3300
     aaatggagaa attgtttgaa gtaaacaatg aagagacagt gaagacactg ggatcagaag      3360
     aatggattat aacaagagga gctttatcgg ccttagcaag aattttgatc caatgggatg      3420
     gttggcacca tcgacaatca tagcaaaatt atttattcaa gggctgtgga tatctgaagt      3480
     tggatgggat gaagtgctgg atgaaaaaat tgctggtgaa tggatacatt ttaatgcaaa      3540
     ataaaaagca atagaaacat taggattcca cgatggactg gaggatcgaa atggaatcca      3600
     tcagtagtat atgggaagac atcaagtgga attaccataa ttgcaagcaa aacaaaagtt      3660
     aatccaataa aaatcgaaaa actctgccaa aattggaact gtgtgccgca cacctgctag      3720
     caaaattgtt gaatttagtt actgcgacca tagcgacgaa aactgatgtc tatgcttgga      3780
     gtgattcaac aattgcgtta agttggataa aaaattgcag aaataaagca ggtttatacg      3840
     atcaaaagta gaacaaatca agcaactggc accaatgact gcatggagac acatagggtc      3900
     aaggaaaatc ctgctgattt aggaacgaga ggcatacaat tggacaagct tggaaactcg      3960
     gaactttggt ggaaaggacc gaagtggctt agtaaagaaa agaaagactg gcccttggaa      4020
     gaagaggata cagtactaca aaatttgagc acggtaaaac aggaaaatgt tctgcatgat      4080
     atggaaaata aattcagcaa tatgggaaaa ttgattaaag taatggctta tgtactgaga      4140
     ttcataaatc gatgtaaaaa aaaatcgtgt caggatcgaa taatttatca gtagaagaat      4200
     tggaacgagc agaaattaaa attttcaagc tacatcagct taaagaattt cccggagaag      4260
     tcgaaaaatg ctcagtgtaa atagcaccct tacacccatt tatggatagc aatggaactt      4320
     taagagtcgg aggcagacta caattttcgk agctamattt tagtcaaaaa catccaattm      4380
     taatawacaa gtcacatttg gcwaagctgt taatcgaaaa aacacatttw agcacgatsc      4440
     acagaggaaa tmggatccga aggmgattct ggataatsgk tctaaaaaat acaatwaaaa      4500
     ccwtcgtacm tcattgtgta cggtgcacca gatttcgaca gcaatgtgca cwgcaattaa      4560
     tggggcagat tccggaacaa agagttacta catcacaacc gtttwcgcat tcaggagwag      4620
     actacgccgg acctatwmat atgagagttt ccaaaggaag aggacaaaag tcgtacaaag      4680
     gatacatcgc cgtttttgta tgtatgagta caaaggccgt tcacttagaa gcagtaagtg      4740
     atcttactac cgaagctttt atggcagccc tcaaaagatt tgtagcaaga aaaggacgat      4800
     gcagacatat atattctgac aatggtacta actttgttgg tgcagaaaga aaattaaata      4860
     tggacctcat agaagctatt aaacgaaaca gtataaatcc gaccctagcg gatgaacgca      4920
     tacaatggca ttttattccc ccggcaagtc ctcactttgg aggaatttgg gaagctggag      4980
     tgaagtcagt aaagtatcat ttaaaacgag tcataggagc gcattattag cagaaattga      5040
     agctgtattg aattccagac cattgtatcc gatcgacgat ggaaacaatt tgaagagatt      5100
     ttgacaccag cgatttttta attgcagacc aacacttgat gtaccggagg atacaaggag      5160
     aaatatgtat caccttttga tagatggaag ctgttaacaa aaatgaagac tcatttctgg      5220
     cagaaatgga aggacgaata tctcgttacg cttcagaaac gaccaaaatg ggaaggtgaa      5280
     aaaattaatt tggaagaagg gcaagtggta cttataaaaa atgaaagtac aagtccaact      5340
     aaatggccgc ttggaaggat agtagaaact catcctggag ccgatggaaa ggtcagagtc      5400
     gtttctgtta aaactcaaag tggagttatt aaaagaccca ttgtaaggag gcctgamaac      5460
     aaatcatcag ctttaataaa ttgtctttta atgttatctc ttattaccgg gataaaagca      5520
     ttagcaaatc gaataaaata atacgatgat atacctggac aatcttggac ttatggacat      5580
     cgcagcgtcg aaatggaatt taattatata ttataacttg gagccataca ataccgagtt      5640
     aagacagata gataaatata tctgggagct agcagttaat tgcaaggctt taattttata      5700
     tgaaggagct tgtcaaataa tggtacgcaa ttttaataat agaattaatc aacttaaagc      5760
     aaataacgag ttgatattta aagcaaaaag gcagaaaaga gcaccctttg agtttattgg      5820
     aactatacac catatattat ttggaaccat ggatgctaca gacagaaata taattaaagc      5880
     aaatatacaa aacattttcg ataatcaaca agatctgcaa catatgtata tgaaacaaac      5940
     atccttaata gattcgacgt taaatatcat aacaaaaaca tcagaggaaa tgaacgaaca      6000
     gttcaaagcg atggaagacg aaataatgag gttgaacaag gaagtacacg aaaatcaata      6060
     tgtcaatcgg atggcactag catatcaaac gatgctgttt caaattacac aattgctgga      6120
     aagttgtgag aaaacgcaag gatcaattac aaatttatta attgatctca atcacggtcg      6180
     ggttaaccct caattgttaa aaccaccgca aataaaaaag gaaattgcac taattaagga      6240
     aaaactagca ccgaacctac agctacctgg atcagcaact ggaacagaaa taagagaaat      6300
     atacaattta atgacagccc aagcgataat tatggatgag aaactcgtca tacasgcaga      6360
     aataccgttg ttcgatcagg aagcatcaac ggtgtataga atgataccaa taccattcgg      6420
     aagttatggc aaaacaatcg ttcctcagtt aaaggctgac ttgttaatat acaactttaa      6480
     caaagactct tacgctttga aaacaaatac acaattaaac gcctgctctc gtcaaagtaa      6540
     tcaacatttt ctttgtcgag gaaactgggt ctggaaatca gccactgaca attcctgtga      6600
     gttatcggcc ctaaagcaaa gtcggaaccc aatatgtgaa ttccaggaga gtcgtgccga      6660
     aaacatatgg gtagaattgt ctacttcaaa ttcttggcgt ataaggtttt caacgacccg      6720
     gtgttggaat ggacatgtgg aaaccatcga agtcaggtca cgcaaattca aacccaagga      6780
     gtactgagac tgcgcaacgg atgttcagcc cgcaatggac aacacctttt aacagctgcg      6840
     cacgaaataa tcacagaaga caatataacg gagccggtag caccactgat tacagtagct      6900
     tttaatatta agaaagaaaa aataaaacca atggcatcaa ggcttataaa taatacatat      6960
     gatataatta acattaaaaa acaactagaa gaacaaaaag cagaaaatat taagttaaga      7020
     ggaattaata tccatactgc tagtgggcat ttggctctaa tagttataat tataacaata      7080
     atcgtaataa gtttaattta tgttagacgt acttgtaaga atgataagaa acaaattaat      7140
     atagaattcg ggctaccaat gaatacatta aattcaaata aataaaggca ttaaggcccc      7200
     ccgcagaa                                                               7208
//
ID   BEL-26_DEl-LTR repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   01-JUL-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-393
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7026-7026 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 393 BP; 129 A; 77 C; 82 G; 105 T; 0 other;
     tgttcacgtt tgaacatgga taattaggtt gctggtgcaa caccacttca gattacactt        60
     gtgacctaag aagtatgttc cccttcccac ataaatagga tgggataacc caaagaattg       120
     acatttgaca tttatgacat acacttgtcc ccgaaataga gtatacatat aaactcctag       180
     aattaacccc tagaattggt tatacataag aacactgtaa ctagtacata agtggaaaag       240
     ggtataaaag acgcgatgag cgccaaataa agatcagttc ctaacgaaat actgttgtgt       300
     tttagtcagg gattcggcgg ttagcggtat aagttgctag ttgaacggag cggttttagc       360
     tgcccccaag acacgcgata tacgctgcta aca                                    393
//
ID   BEL-26_DTa-I repbase;    DNA;    INV; 8407 BP.
XX
AC   .
XX
DT   16-JUL-2021 (Rel. 26.10, Created)
DT   16-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8407
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5686-5686 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 8407 BP; 2279 A; 2211 C; 1783 G; 2123 T; 11 other;
     tggtccttcg agccggataa ttctagaaga ggagacgaat ttcaagtacc agcgtccaac        60
     cggcggattt tccaagttcc aagttcaaga taagtacgaa tattccatta ttccattgcc       120
     gaccagtcag atatttccca agaacccaat tttcttatat ctgtctgatc ggccatttcc       180
     atttgtgcat acgatcgcca tattccggct tcttccggct tctttttcgt attgctattt       240
     ccattttcat acgaccgcca tattccggct tcttttttcg tattgctatt tccatcttca       300
     tacgaccgcc attttccggc tttgcttttc atatttccca ctttccatac atattcgggt       360
     tcatacggac atacaatcca gatgcacact ttttaatgta cgtacataca tatgcctgac       420
     cagcgcaaca tatgtacgta agctaacata cacgtacctc cgcgttacac cctgcgaaca       480
     tttctacagc gacatttacc atacagtcca cattatctcc aatttacaaa atatttaaaa       540
     ttacaatttt aaaacacaca tccatacgcc catacataca catatatcca cattatctcc       600
     aatttacaaa atatttaaaa ttacaatttt aaaacacatc catacgccca tacatacaca       660
     tatatccaca ttatctccaa tttacaaaat atttaaaatt acaattttaa aacacacatc       720
     catacgccca tacatacaca catatacata atcctaatgc atgcttatta atgtacgtac       780
     atatcgacat atccatttcc acgtatgtac akaagggaaa agtcacgtaa cgtaacgtaa       840
     ggcaacgtaa gcacgataca cacgtacgtt ccttctcggt acaccctaca aacatttcca       900
     aatcaacatt taaaatacag cccacatcat ttataatttc cgaagataaa atatacaata       960
     tatatacaca aattaaaaac atataatcct gatgctgata cactattata tatgacaatt      1020
     atatatattt tccacccaac acaattaatt atattataca caataccaaa ataacttgtt      1080
     tccgctgaac acaatttatt atatattgca taaaattaca aaaaaataac ctgtttccac      1140
     cgaacccacc agcacgatac gcctgtccag aatttgcatg gtatttattt cagcagcgct      1200
     aattcgcaca caccggcggc tcacatccat taaaataaaa ataaataaat acttttttgt      1260
     gaccaagccg tgacggtgcg cgatatatat attttcccat tcctaccgct cattttcgca      1320
     gcacagcaac cgactgcaaa tatcttgcag aatattattt tttccacagc agcgatattt      1380
     tcctcgcacg ttaaaatagt tgttgcgaaa accttgaaat ttttattggt gttccgtttc      1440
     cacatattcc aaagtagacc acggagctgc aacgctagga aacaaaagcg gaccgcttgc      1500
     aatctatacc gaggaaacta agaagccact gcgatatatt aacatttttg ttttttttta      1560
     aacaaaattg aactaattcc gtaatatttt ttgtcgcgtc gatccactat acattgacat      1620
     tgttgacatt cagctattag aattttcgaa attttggggc cgtattttcc ggaagttatc      1680
     cattttcgtc ggtccttttc tttgccaatc aatcccggtg atccgcaaca gcgtgaccac      1740
     attccaggac ggacctttct ggaatgccag gagacaaaac aaagttgtca gttccgtctg      1800
     caaataaaac gcgatcgcta tccgcatcac cacgcgcgcg cacctcaagc ccagtagccc      1860
     caaaaccaat atcaaaggca aagagcgaaa cttcagtagc cagccaagca ggcgacaaga      1920
     agttgtctgt tcctacgatc catccgaaac gattgtctct aagtccgctc acgcctaaag      1980
     ttaggtcgca aatccagacc aagtccgtaa agtcgctagc aactcgttct caggcaaaaa      2040
     tgagtaacga aattgcagtt gcagccctcg cgcggtttat cacggtgtcc gaccgtatga      2100
     gccatttcag agcgactata gaaactccag gagctgcagc tccgtccgtc cacacctgca      2160
     aagtccgaaa agaacaagtc cgttcactct gggacaaagc cgagaaggaa tttgaagctt      2220
     gtctagacac gatttccagc cttacgactg acgaggcgtc ggatattttg gcgactctac      2280
     accgaaaata tgaatattgc tattcggtgt acgaggagct atcggttcag ctcagcgagt      2340
     taattgaccg agccagttca cagcagccgt tgtcgagcac cgacaatcag tccgcgtaca      2400
     ttccgtctgg gtgccggttg cctccatgtg atacagaagt attcgaggga gactatctca      2460
     aatggccaac attcagggac cttttcactg ccgtctacgt caacaacaca cggttgacgc      2520
     cggtcgagaa gttattccat ctcaacgcga aaacgagcgg tgaggcaaag gcaattgttg      2580
     ccaagtcccc gctcactaat gatggtttcg cttccgcttg ggaggcgctt cgagaccgtt      2640
     tcgaaaacaa aagactttta gtgaacagtc agctcaagct cctatttaac ttaagttccg      2700
     ttaatgccga aactggccac tccataaaag agcttcagag caccatccaa gggtgcctga      2760
     cagcattagc ccactccaaa atatcaaccg aaaattggga ttgcttgctg gtctacctgt      2820
     gcgccagtaa gttgcccaga ttgacccttt ccttgtggga acaatccctt acatcaaagt      2880
     ctgatgttcc tacatgggat gagatgaacg cgttccttag cgataggtat agaaccttag      2940
     aagccattga ggacatgaag cagagtcttg gtggtccgtc aacttccaaa aattcccaag      3000
     ttacgaagaa gcttaactcc tttgaagcca aagtgagtgt caaaccaaag agctgcgatt      3060
     tgtgctctaa ggagagtcac ccagtgcggt tgtgccctcg cttcattcag atggcaatcg      3120
     aggcgcggga aagctacata aaaaagaagc agttatgctt gaattgcttc gcgagaggcc      3180
     atcagctccg ggattgttcc agtacgcaca gctgcttcgt atgccgaggg agacatcaca      3240
     cgcttttgca tcgaggcaac ccattttcca acaatccaag ttcctctgga catgcgagac      3300
     ctagatccga tcctccgtcg ggaggctcag acattcccga tgaacactca aatgtacaag      3360
     tctgttttgc ctcgggctca aaggcagttc tgttgggcac ggcaatgatt gatatttgcc      3420
     acctcggcac ccacttccga gcacgcgctt tgatcgactc gggatctgaa gcgacgttca      3480
     taacggagcg tcttttcaag ttggtcaatc tgccgttccg ccccattcaa gctcaagtgt      3540
     ctggtttaaa tcagaccgtt tctgcccagt caacamggct ttgccatttc gccattcgtt      3600
     ctcctactaa gccgggcctg cagttagaca ccgcagcgta tgttctgcca gaactagcag      3660
     gcagattacc ctcacattcc attccacaag atgtcctgag agatttgcca aaccttcaat      3720
     gggcagatcc cacatttctc cagagttccc agatagacgt tcttatcgga gctgatattc      3780
     ttccatccgt gctgctgagt ggcacaaaga ccaacatctg cggatctctt tttgggcaag      3840
     agaccatctt cgggtgggtg ctcactggtc cagtgtccat gtccacgagc aaccgagtct      3900
     cagcctttac gactcaaatt acaaaaacaa gtgaggcgtc cttagacaaa cttcttacka      3960
     agttttggga ggtggaagat ctaccatcaa aaatggtaaa agagtccgat tccgtctgcg      4020
     aaagtaattt tctacgaacc acaactagag acgcgagcgg gaagtacgta gtgacgttac      4080
     cgttctgcga ccccgatcat tgtggatcwg agttgggtta ctcaaggtct atagcacttg      4140
     ctcagtttct gagaaacgag aatcgtttac gaagggacac tccattaaat gagcagtaca      4200
     actccgtgat tcaagaatat ttggatttag gccatatgag agaggtttcg cccactcaca      4260
     attctccaaa ctactacctc ccacaccatg cggttataaa acccgaaagc acgaccacga      4320
     aactccgggt ggtattcaac gcttccagcc cktcagcaaa tgggactagc ttgaacgatg      4380
     tgcttcatgc cggtccagtc ctccaatctg acttaacaat tcagatttta aagtggcgct      4440
     atttcaagta tgtctttagt gcagacatca cgaaaatgta taggcagatc tgggtcgatc      4500
     caaagcacac gccctttcaa aggattcttt tccgaaacaa ggaaggtgac attcgagatt      4560
     acgagctgaa aaccgtaaca ttcggtgtca attgcgcgcc ctatctcgcc atccgagtgc      4620
     tgaaacagct ggctgatgac gtcgatcagc agtttccaaa agccagtcac ataatccgca      4680
     acttcatgta tgttgatgac gttttagcag gatcgaattc tcaacaagaa gctcaacttg      4740
     ccatccagga gttagtaacc gctttgaatt cggccggttt tccgcttaga aagtggactt      4800
     ccaaccacaa gggggtttta aaggacattc caaatgagca tcttctccat tctgagttcc      4860
     taaatattga tgccgaaagc acagccaaaa ccctcggcat tcgttggaga gcaaccaccg      4920
     acgagttcta cttcgtgccc ccagaaatat ccgtcaagtc ctcctatact aaaagagaag      4980
     ttctctccca gatcgcaaag ctattcgatc ccgctggatg gcttgcaccg ttcatcgtcc      5040
     gggccaaaat ttttatgcag gagatctggc tgcaagagtt aggctgggat gacaaccttc      5100
     ccgacgaaat gagccataga tggcaagtgt tcctgcaaag ttattccgat ctcgatcaaa      5160
     tccgtattcc gagatgggtc ggttaccagc cccaggtaaa aatcgagctt cacgggttct      5220
     gtgacgcttc ccaaaaagcc tatggggcgg cgctgtatgt cagggttgaa gtcggtcagc      5280
     agatattgac taatctgcta acggcaaaga cccgggttgc ccctgtgaaa actgtatctc      5340
     tcccccgact cgagctatgt ggtgccctat tgctggcaga tatggcatct accatccttc      5400
     caaatatgct gtcaaaaagc tctgagattt tctgctggac agattctacc attgtcctgg      5460
     catggttaaa gaaaccagcc tgctcctgga ccacattcgt agccaaccgc gtaaccaaaa      5520
     tagctcaagc tacaaagatt gagaattggt cacatgtgcg gtcagaacac aattctgccg      5580
     acctagctag tcgcggcgtg tccctgcaag agctgggcga tagcaacctc tggtggcatg      5640
     ggccccagtg gttacaattg cccaaacttc aatggccaga aacttcggat ccacacccag      5700
     tcactgaatt agagcagcgc gcggtgaagg ttcatttcgt aaagctcccc gctgatgatt      5760
     tccttgaccg tttttccaga ctagacaagg ctttacgagt cctagcttac gtccaaaggt      5820
     tcctaaatcg ctgtcgtaag gctccggtaa gtccggataa gcagctcagt aatcgggaga      5880
     tccgggaggc tgagaggacc tacataatac ttgcccagcg tgaagagtac gcgctcgagc      5940
     ttcgattgtt acgaagcaaa agatccatac ccgcatcaag cccaattgct aatttgtttc      6000
     catttataka ccaacaggga ctcttaagag catgtggtcg cttaactgcc tccaaggtcc      6060
     tgcagtatga cgagcgccat cctgtattac tcccgtacag ctgtcggtta tctcgtcttc      6120
     ttgtccaatt cacgcaccag attacgcttc atggcggcaa ccaattgata gtgcgcctga      6180
     tgcgatccaa atattggatt cctaaagtca agaatctggt aaagggcgtg gtgaattcat      6240
     gcaaggtgtg caccatttat aagaaaagac tgcagaccca attgatgggc gattttccga      6300
     ctgatcgagc ctctttttcc aggccattta cttacaccgg cgtcgattac gccggcmmct      6360
     wtgaggtaaa aaactataca gggagagctt gtctcatcac taagggatat gtttgtgtgt      6420
     ttgtgtgctt ttctacaaag gccatccatt tggaacccac ctccgacctt acaactgaga      6480
     agtttctagc agcgtttgcg cgttttgtag ctagaagagg ttgtcctcag cgggtccatt      6540
     ccgacaacgg caaaaccttt gttggcgcct caagtcttat ttcccgtgac tttacgcaag      6600
     cactaaagga gtcagtgacc gatgcgtata gccatcaggg actcgtgtgg cgtttcatac      6660
     ccccaggagc tcctcatatg ggaggcctgt gggaggcagg agtaaagagt tttaaaacgc      6720
     tgttttacaa atccacgtcc gctcgcaagt atacattcga agagctttcc acgcttctgg      6780
     caaagattga agcctgcctt aattccagac cactctctcc aatgtcagag gacccgacag      6840
     acttgctggc actgacgcca ggccattttc tgatcggggg wccgttgctt tccacggcgg      6900
     agcctgaaat taaaggcgaa gccmagtcaa tcataaatcg atggcaacat ctcaaggccc      6960
     agcatcaaca atttagttcg cgatggaaag aagagtatct aaaggaactc cacaagcgca      7020
     acaagtggtt gagtccatcc agaaatctgc aagtcgacga tatggtagtc atcaaggacg      7080
     ataatttgcc atcaaatgac tggcggctcg gcaggatcgt agctgctatc ccaggagctg      7140
     atactagagt acgcgtcgta gatattctta cttctcgtgg aaccatccaa cgtccggtcc      7200
     acaaactagt acttcttcct atggaggaca aggcaatctc cgcacttccg caataataac      7260
     ttctgtcctc attctagtac ttcttcctat ggaggccaag gcaacctccg ctttccaaaa      7320
     atagtgcctt ctgtccttat ttttcaaaat ccgttcacaa attgatacta aatttgctta      7380
     tcatttttta ttaaagcatc aaaaccatgg ctccacgtcc tcgcagcgcc caaactttgg      7440
     acgacagacg ttcacgaggt actcgatcct accgctgccg agtctgtcgg ggaatccatc      7500
     ctctacggaa gtgcacccgc ttccttaggc tcagcacgga gaagcggctc cgtgccgtcc      7560
     tcataaataa atattgtgcg aattgcctgg cccatcaaca ctcagggggg caatgtcgca      7620
     gtggcgacac gtgcaaaaag tgcgggcaga accatcacac gctgctgcac ctgcacgaga      7680
     tgtccgggac tactcggcaa ccgcccatcc agcagcgtcg tcaatcgcca tccccgccac      7740
     gtcgccaatc gccgtcctcg caacatcgcg gatcgaccac tcggctgtca agggcagtct      7800
     cgcggtctcc atcgccagcg gcacgggaag cacggacacc ggtccgacgt ccagcgtcag      7860
     cagcaactcc atcagtggcg gctctcctgc agcatcagag cctccacatt cttccgacgg      7920
     ccatcgtgtt gctggagtct ggggccacca ccttcgagac ggctgcgtta atcgaccctt      7980
     gcacgcccgt cagcaccatc gacagctccc tggcaactgc gttcaagttg cccacgacga      8040
     cagtgagagg cgaagaagtt tgctcgacga caatccggtc gaggacgggc gatttccaga      8100
     tcgacgtgct gctgaagatc agtcagagtc tacgaatccg cacccctatc cgcgcgctaa      8160
     gcgattctat gcgagcccaa tttgatgata tccgtctggc cgatgagcag ttccatcgcc      8220
     cagcgacagt ctcgctggtg ttgggctcgg acgtataccc cgacgtaatc aggcccgggt      8280
     tcctaaatat acgagatggg ctgcccgtcg cacagggcac ggtctttgga tgggtcgtgt      8340
     ctggagcatg cagacacgcc taaggattaa tcctttgcta cgttcgccct cgcaaggggg      8400
     gggagaa                                                                8407
//
ID   BEL-26_DTa-LTR repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   16-JUL-2021 (Rel. 26.10, Created)
DT   16-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-354
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5655-5655 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 354 BP; 86 A; 106 C; 70 G; 92 T; 0 other;
     tgttcgcgcc agagcggcgc ccccagtccc ggcccatttt cccttcaagc gcccctggag        60
     ccttgacagt cgagacagca gttcttccag atcgctcgca tctcgctctc tcgcactgtt       120
     aagtgtctcc actccgctct ccaagcggct cttggagctt ccactctgta gttttaagtt       180
     agttctaatt taccagtgta aacgaaccgt acgcaattga agtcaataaa atcgtggagt       240
     attattttat aaagtgaaaa cgaaaacatt tcggccgtct taaattgact tctcgggatc       300
     ggtagcacca gcacaaacat ccccaattgg aaaatcccgc cccccgacat ttca             354
//
ID   BEL-26_SiCu-I repbase;    DNA;    INV; 5505 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5505
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5000-5000 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..5282
FT                 /product="BEL-26_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEELRRARRPVRWEFNKLHTELVNLLKEAKPKKDLVT
FT                 VKFKLLSDTFEKLQGHDNKVMEQLHIDNIAVEEENKEVEGILXIKSKFEEV
FT                 RLSKENKFPEKPTYAESVSGTASVETVKMRNCNLPTLQIKKFSGELSDWLA
FT                 WWAQFEKIDEDPHMRGSDKFRYLLNYLEPGTDAYEIADGYAQSNENYEKVI
FT                 AALKKRYANEDLLLQVYIRQLLNLVISNVNAKEKIPLKTLHIKIDSHLQAL
FT                 KTLNLEKADPATWLFPLVESSLPDKILDNWQRSPLSSQDGSKEDPPCTRLD
FT                 MLMRFLEREVEINQKIEITRTFGHEQEKGARQGSKSDQRIIKTANRKFERR
FT                 APVPTLSSFHNAERSVCVFCGRNNHNSKDCYRAKEMDYEERIDILKKKGLC
FT                 FRCCGSHHARDCSTKKLECKICKRRHHTLLCRDNQRKDNSNVKHDEPPPKR
FT                 GRMETGGGEREKTTVTTSQASIGGCGDVTLQTLMVTVVNKEKRMKLRAFID
FT                 GGCEKSYISRRAAQQLELQPGGVVRSIHYLFGGHQTKAISHNKYKINLKSV
FT                 EDNFQLRVEVREQEKICTAMPTPVRKYPEILEELRKKKIILSDDGALDIDL
FT                 LIGADIYPHILTGQFVKLSSGAVAIYTKLGWTVQGELAGGDHHHEDSISSS
FT                 CISMSVNDANIASLWELETLGIREPSEEKEIRKKVELARENYISSISRGTD
FT                 GRYIAKLPWKEDLPFLPTNRPVAYKRLESATKKLLETGMYESYDNIFKQWE
FT                 RSGFIERVPLDDAAERMHYLPHRPVIKTESLTTPVRPVFDASCRVGKSPSL
FT                 NDCLFTGENYVLLILDILLRFREKRVAFIADIKKAFQMIGLHVEDRDVVRF
FT                 LWWEDKERKKVIEYRHARVVFGVTCSPFILAAVLYHHLSTLPXAEQPFAEK
FT                 LLSTIYVDNCVNSENTXEEYAXFREKAVKIFXEAAMDLRMWQSNIEDYEDE
FT                 ATRIVSVLGLLWDRKEDTLSVNMKSFRVPEKVTKRTILSTVQKVFDPVGFT
FT                 CXATLPMKILLQRTWQKKVKWDDELLEEEKRAFLKWCSEAEVIGRIXIPRL
FT                 STNGGGDRRNWSIHIFGDASKTSYATSVFLRSGGEEVTVQLLAAKSRVAPL
FT                 KQMTIPKLELMSCLLGVRHYNTVKKALDLGDVPAYFYCDSTTALAWIRRDD
FT                 QWGTFVANRVKEIRTTTKPEQWIHVAGVDNPADLPSRGCSPIQLLESNWWX
FT                 GPSWLXLEEREWPVLAETYDEDEIIEERKKTQVVXSFSVMDGVRXSHXWSS
FT                 MVRIVGWARRFLFNXLVKNEELRRRGPLTSEEIGKAEIIFIRQMQREEYPK
FT                 EDRSKLNGLEVFEDDWGVLRVKTRLTYREELGDYRYPFVLPHNRSEVKQLI
FT                 KDYHELQTYHSGVGFLMTIIRNKYWITKCRATIKKVLNKCVRCKRFSAKGV
FT                 VPKPAPLPXDRVKDAEVFEVVGVDLAGPLXLKNGNKAWFVIFTCGVYRAVH
FT                 LEAITSVSTAAFLKAMETFCEKYRRPAIIYSDNGTNFRGASNLFRQINWDE
FT                 VEQYERIPKIEWKFIPVTSSWWGGFWERLIRVAKDLLRRTVGKGSLNWNEL
FT                 KMALKTVADVMNARPLTYASEDPNDLEPLTPALFLHPFGNAKFPEREITEG
FT                 DKLRVRLNYMKNLQRELKGRFTREYLSMLVNRNNKKPTRELRAGELVLVGS
FT                 DNTKRLDWPLGRVVETIPGRDSERRIARVLTXRGEIVRSVQRLYPLEVDDE
FT                 ADTEKALRERGVFTRSGRRVQRPERFE"
XX
SQ   Sequence 5505 BP; 1610 A; 1064 C; 1541 G; 1237 T; 53 other;
     ttttggtgac cccgacgtga ccgggtggat cggggagcaa gatggaggag ttacgtcgag        60
     caaggcgccc agtgcgatgg gaatttaaca agttgcacac ggagctggtg aatctactaa       120
     aggaggcaaa gccaaagaag gatctcgtca ctgttaaatt taaactactg agtgacacgt       180
     tcgagaagct tcaaggacat gataacaagg tgatggagca gctgcatatc gacaatattg       240
     cagtagaaga agagaacaag gaggtggaag ggattctgga katcaagagc aagtttgagg       300
     aggtgaggct gtcaaaggag aacaagtttc cagagaagcc gacctacgcg gagagtgttt       360
     ccggaactgc cagtgtggag acggtgaaga tgcgcaactg taatttgcca acactccaga       420
     taaagaagtt ttctggagag ctctcggact ggttggcttg gtgggcgcag tttgagaaaa       480
     tcgacgagga tcctcacatg cgtggcagcg acaaatttag gtacctgcta aattacctgg       540
     aaccgggaac ggacgcctat gagatagctg atggatacgc gcagtcgaac gagaactacg       600
     agaaggtgat tgctgcactg aagaaacgct acgcaaatga ggatcttctg ctacaagttt       660
     atatcagaca actcctgaat ctggtcatct cgaacgtgaa cgcgaaggaa aagatcccac       720
     tgaagacgct gcacatcaag atagattctc acctacaggc actcaagacg ctgaatctag       780
     agaaggcgga tccagcmacg tggctgtttc cgctcgtcga gtccagtttg ccagacaaga       840
     ttttggacaa ttggcaaagg agccccttat catcacagga tggcagtaaa gaagatccac       900
     cgtgtaccag attggatatg ctcatgagat ttttggagag ggaagtagaa atcaatcaaa       960
     agatcgagat cacacgtacg tttgggcatg agcaggagaa aggagctcgt caaggaagta      1020
     agagtgacca acgcatcatc aaaacagcaa accggaagtt cgagaggagg gcaccagtcc      1080
     caacattatc ttcattccac aatgcagagc gatcagtgtg cgtcttttgc ggaaggaata      1140
     atcacaacag caaggattgt tatcgagcta aagaaatgga ttacgaagag agaattgaca      1200
     ttttaaagaa gaaaggactt tgcttccgtt gttgcggatc gcaccatgct cgagattgtt      1260
     ctacaaagaa actggagtgc aagatctgta agaggcggca ccacacatta ttatgcagag      1320
     ataaccagcg caaagacaac agcaacgtaa aacatgacga acctccacca aaacgaggaa      1380
     gaatggagac aggcggaggg gagcgagaga aaacgaccgt tacaacgagc caagcaagta      1440
     ttggagggtg tggtgacgtt acgctgcaaa ctttgatggt gaccgtggtg aacaaggaga      1500
     agcggatgaa attacgagca tttattgatg gtgggtgcga gaaaagctat atttccagga      1560
     gagcggctca acaactggaa cttcaacctg gaggcgtggt gcgttctatc cattaccttt      1620
     tcggtggtca tcaaacgaaa gcaatctcac acaacaagta caagattaac ctaaaatcag      1680
     tggaggataa tttccaactg cgtgtggaag tacgtgaaca agagaagatc tgcacagcaa      1740
     tgccaactcc tgtgaggaag tacccagaga ttctggagga gctgaggaag aagaagataa      1800
     ttttatcaga tgatggagct ttggacattg acctgcttat tggagctgat atttatcccc      1860
     acatacttac tggtcagttt gtaaaactga gctcgggtgc agtggccata tacacaaaac      1920
     ttggctggac ggtgcaggga gagttggcgg gaggagatca tcatcatgag gacagtattt      1980
     caagttcgtg tatctcaatg tcagtgaacg acgctaacat agcaagctta tgggagttgg      2040
     aaacgctggg gattagagag ccatcggagg agaaggaaat acgaaagaaa gtagagctgg      2100
     ctcgtgaaaa ttacatctcg agcatctcaa gaggcacaga cgggcgttac attgcaaaat      2160
     taccgtggaa ggaagacttg ccatttctac caaccaacag acctgtggcg tacaagaggc      2220
     tagaaagcgc aacgaagaag cttttggaaa cgggaatgta tgaatcctac gacaacatct      2280
     tcaagcagtg ggagaggagc ggatttatcg agagggtgcc tttggatgac gctgctgaga      2340
     gaatgcatta tttgccacac cgacctgtga taaaaacgga gagcctgaca acgccagtca      2400
     ggcctgtttt cgatgcttca tgccgtgttg ggaagtcacc ttccctaaac gactgtctct      2460
     tcaccgggga aaactatgtg ctacttatct tggacatttt gctgcgtttt cgggagaaaa      2520
     gagtggcgtt tatcgccgac atcaaaaagg cattccaaat gattggattg cacgtggagg      2580
     atcgtgatgt agtacgattt ttgtggtggg aggataagga gaggaagaag gtgatcgagt      2640
     acaggcatgc acgtgtggtg tttggagtga cctgcagtcc cttcatattg gccgctgttt      2700
     tataccatca tctctcaact ttaccagwag cagagcagcc attcgcagaa aaactattgt      2760
     caactattta tgtcgataac tgtgtcaact cagagaacac ggmagaggag tacgcagwtt      2820
     tccgggagaa ggcagtgaaa atattcmaag aagcagcgat ggacctgaga atgtggcagt      2880
     ccaacattga ggactacgaa gacgaagcaa cgcgaattgt gtcggtkctg gggctgctgt      2940
     gggacaggaa ggaggacacg ttatcagtwa atatgaagtc attcagagtc ccsgagaaag      3000
     taacaaagcg cacgattttg tcaacggtwc agaaagtctt tgaccccgtc ggttttactt      3060
     gtkctgctac tctaccaatg aagatcttgc tacaacgwac atggcagaag aaagtcaagt      3120
     gggacgatga gttactggag gaggagaaac gwgcattttt gaagtggtgc tctgaggctg      3180
     aagtcattgg sagaattmaw atcccacgtt tatcaaccaa tggaggmggt gacaggagga      3240
     actggtccat acatattttt ggagatgcga gtaaaaccag ttatgcwaca tcagtattcc      3300
     ttcgttctgg aggagaggag gtgaccgtkc aactcctagc wgcaaagtcg cgagttgccc      3360
     cgctaaaaca aatgacgatt ccaaagttgg agttaatgtc ttgcctgctt ggagtcmgac      3420
     attacaacac tgtgaagaaa gcattggact tgggagatgt tccagcwtat ttctactgtg      3480
     attccackac ggcgctggcs tggataagga gggacgacca gtggggcacg ttcgtggcaa      3540
     atcgagttaa agagatacgc acaacaacma agccwgagca atggattcat gtagctggag      3600
     tcgacaatcc agcwgatctc ccgtcacgag ggtgctcgcc cattcaatta ttggagtcaa      3660
     actggtggwg cggaccgagt tggctgtwtt tggaggagcg tgagtggcca gtkttagcmg      3720
     aaacwtacga cgaggacgag ataattgaag agcgaaagaa gacgcaagtk gtkamgtcat      3780
     tttctgtgat ggacggagtg cgwgmctccc acamgtggag ttcaatggtg cgcattgtwg      3840
     gatgggcgag acggtttttg ttcaacamac ttgtcaaaaa tgaggagctg cgacggagag      3900
     gaccattgac tagcgaagag attggaaaag cagaaattat tttcatcagg caaatgcaaa      3960
     gggaagaata tcccaaggaa gatcgttcca aactgaacgg gttggaggtg ttcgaagacg      4020
     actggggwgt gctcagagtg aagacgcgtc tcacttaccg tgaagaatta ggagactacc      4080
     gttacccttt cgtgctmcca cacaaccgca gcgaagtcaa gcagctgatt aaagattatc      4140
     acgagctaca aacgtaccat tccggggtag gattcctgat gaccatcatc aggaacaagt      4200
     attggatcac gaagtgcagg gccaccatta agaaggtact gaacaagtgt gttcgctgca      4260
     agcgkttttc agcgaaaggc gttgttccca agccagcccc gctgccatwk gaccgagtga      4320
     aggacgccga ggtgtttgag gtggttggag tggatcttgc tgggccgctg wttttgaaga      4380
     atgggaacaa agcstggttc gtcattttca cttgtggagt gtatmgagcg gtacacctgg      4440
     aggcaataac gagtgtgagc actgcagcgt tcctgaaagc aatggaaacg ttttgtgaga      4500
     agtacmggag gcccgccatt atctattcag ataatggcac gaattttaga ggagccagca      4560
     atctgtttcg ccaaattaat tgggacgagg tcgagcaata cgagaggatt ccaaaaatag      4620
     aatggaaatt tataccagtt acgtctagtt ggtggggcgg tttctgggag agactaattc      4680
     gagtggcgaa ggatttgctg agaaggaccg tcggaaaggg gagcctcaac tggaatgagt      4740
     taaaaatggc gttgaagaca gttgctgacg tgatgaatgc gagacctttg acctatgcga      4800
     gtgaggatcc waatgatctg gagccactga cgccagcatt atttttacat ccctttggga      4860
     atgctaaatt tccagaacga gaaattacgg agggggataa attgagggtc aggctaaact      4920
     acatgaagaa cctgcagaga gagttgaaag gtcgcttcac gagggagtac ctttccatgt      4980
     tagtcaaccg caacaacaag aaaccaacac gagagttacg agcgggggag ctagttcttg      5040
     tcggaagtga caatacgaag agactggatt ggccattagg acgagtwgtg gagaccattc      5100
     caggacgaga tagcgagagg aggattgcaa gagtgctcac agmgcgwgga gaaatcgtga      5160
     ggtccgtcca acggctctat ccactagagg tagatgacga ggcggatacg gagaaagcat      5220
     tacgcgagag aggcgttttt accaggagcg ggcgcagagt tcagcgtcca gaacggttcg      5280
     agtgagattg agcgtcgtgt gtggccaaat gggactctcc ttagtttttc ctttttttct      5340
     ttcttttcat tttctcggag agtcgcgcag gttttcctct tcaaattttt atgttcagtt      5400
     aggaagaggt tttccctcgt gcccacgtaa aattaaatgt attttttaaa gttgtatgat      5460
     tcgttttaaa tgaaaaagac tcccgtcctt ttcatggcgg gagga                      5505
//
ID   BEL-26_SiCu-LTR repbase;    DNA;    INV; 756 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-756
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5023-5023 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 756 BP; 223 A; 119 C; 176 G; 225 T; 13 other;
     tgttgaaaat gtaaatattt ccagtaattt gtatgtatgt ttttgatgcc tttgtgtcta        60
     attttacgtt tgtggggaaa ttgagaagca agcgtgtttc tcgggggata gcacacagtt       120
     gcagagagga aagcacacag ttgcagagag gatagcacac agttgcagag aggatagcac       180
     acagtgcatt tcaacacgag gagggagaag cagacgtgtt tctcggggaa ttgcatcata       240
     gttgcttttc acccatttac gagttgagac ttgtcgcaat catagtttgc ttttcagaca       300
     agtaagaagc ggttcgtttt ctttgtgact ggggcagaga tttaactcga actcgcagtg       360
     cgattctcat kacgagagag acgagacgtg tgagattttt aagctactca gtagcaasag       420
     agattttaat taattacgag ttactgamgt actagtaaca aaagcgatta mgagttgagc       480
     agttaactga cgtactagta aactgaaagw aaagaggtgc cacgagggca attamgaggg       540
     ataattagkg actgmgccta attaaaggag agtttttaaa caataaacta aaackagtgt       600
     tatttcccca caatcgcata acttgtgtwt tkttgtkcat cttatttcct ggcagttgtt       660
     aatttttgat tctcatctta cgataaacat tstttcacga ttcacccaga gttagtccat       720
     tggaagtagt tgaggttatc agttacattc cggaca                                 756
//
ID   BEL-26_SpEx-I repbase;    DNA;    INV; 5965 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5965
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6906-6906 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           712..5940
FT                 /product="BEL-26_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSDEKIAKLVKRRSCMKSKLTVFGNYLHTLESCNELS
FT                 SLQLLDLETRFNKFGSLYDDFDNLQCDIEMLSEDPDNESGEREQFENQYYK
FT                 LVAAARRLLGARPHQSSHLQDGSVASCEDGQSGGFRSNCVRLPKINLPTFH
FT                 GHYQNWLEFRDTYLSLIHLRPDIDNINKLHYLRASLKSSALLVIDNLDFKA
FT                 ENYEAAWNLLCSRYDNKRLLVNNHVHALFNVEHIKQESCSAIRHLVDVTNK
FT                 NLRALSTLDQPTQYWDTLIIHMMADKLDSVTHREWEEHRNTLSDPPSLAIF
FT                 VTFLSNRADLLETLQENKGKIKTHNRNSIDNLKSNFNQPTSTNSKHTQNTY
FT                 LQYNTNKNHNSSYKKSLTCPMCNQNHFLFSCEAFRSLSIEDRRQTAKEAKV
FT                 CLNCLRPGHVESRCNLVPCKYCKKKHSTLLHMHEAETKLEPAIPVSSLDSF
FT                 SSSTDVMESSTPQNVLLSTALVRVVDIKGEVHTARVLLDNGSTASFVSEFL
FT                 CGKLGLSRRATSTTVTGINNNTSHSSQSCSLTIISNYDEKYRLSVDCHILP
FT                 HVTKVLPSSFINIDNIPLPSGISLADPSFNIPSAIDILLGADVFWSVLCNN
FT                 SIDLGKNQPKLYETKLGWLVSGYVARHKSHTPLVCNFLSEEADPDLSRFWE
FT                 LDSVAIKHSLSPEEQACEQSFIKNTFRKDDGRFVVVMPLKKDPSVLGDSYQ
FT                 KAKCRFLSLERKLQRDRIFKDRYMDFMLEYERLGHMTENKDSSFTTCNNVN
FT                 YFLPHHGVVREESSTTKLRTVFDASATTSSGLSLNDIQMVGPTVQEDLYSI
FT                 LVRFRQHKYVVTGDVEKMYRAIELNPSQRHLQQIIFRFTPNEPFKTYTLNT
FT                 VTYGTASAPYLATKCLVSLASNAPDDDVKQSIQRDFYVDDYLGGSSSINET
FT                 INMCKGVISVLKSAKFNLRKFKSNSQTILDHISPSSINSSNQILDLSDPST
FT                 VGTCKTLGLNWICESDTLSFSINIKNPVKNVTKRXILSVISQIFDPLGLVS
FT                 PCVIEAKILMQQLWINKYNWDDEVSKEIMDSWLAFVDTLPSLNQLKIPRWV
FT                 LSDTCERYEIHVFSDASVAAYGACLYIRSVQRSGLVNVKLVTSKSKVAPIK
FT                 PVTIPRLELCGALLAARLCTKVLSSLTLHVGKCQFWCDSTIVLGWLTTSPL
FT                 QLKHFVRNRVHEIQESTEGHSWGYVPSKDNPADLVSRGLKADSISNSSLWW
FT                 SGPTFLLKDELLWPKMPNQREKHDLPELISCSVVCCSTNVDPICNLINNTS
FT                 NFIYLQKTIAYLQRFIYNFRNKSNKRAGQFSVTELKNSLYLILHKAQLEMF
FT                 AEEYAILKAKKSLPSKNRLISLSPYLDPNNLIRVGGRLDNSPYSFDTKHPI
FT                 LLCSKHHLTKLIFQYNHLKYLHAGPQLLLSNIRQSYWPLGGRNLAKNIVAK
FT                 CVRCCRYKAQCAQPIMGQLPSSRTELLYPFLHCSVDYAGPVMIADRKGRGC
FT                 KLIKSFLAIFVCNATKACHIELVTALSGEAYIAALNRFVSRRGKPHSITSD
FT                 NGTNFVGTSNELSKILARSDLEGQLALEGIEFKFIPAYSPHFNGLAEAAVR
FT                 SIKHHLKRLLHTTHFTYEEMATCLTQIEAVLNSRPLTPLSSNPVDFSALTP
FT                 SHFLIGRPLNALPHSQDSDVDIGKINRLERFKRIQVIRRHFWDRFSLEYVA
FT                 LLQQKVKWHSSRAELKLGSLVLIKERALPPSLWSLGRVTKVYPGSDGVSRV
FT                 AEVLTKRGTIRRAFNNICPLPEF"
XX
SQ   Sequence 5965 BP; 1765 A; 1219 C; 1154 G; 1826 T; 1 other;
     tggtcctttg tggaactcgc cagcctaatt acgaagtttg aagaaatcgg gatcatcctt        60
     ttacatcggt ctagaagctc ttttttcacc tgcggtcttc agcagcgaca gttcctgcag       120
     gagtcatcaa aatcctgacg aagacttttc gcatagcagc cgcaagtttc aagaaacgat       180
     aaactgtctg accgttggac ggactttgga cccgtcgaga gtgacaagtc atcgttgaga       240
     acaaagaaga acgaaaagtt gcagatcatc gtttatcctg tgtatggttt agacattctg       300
     tgagttcgtt ccaattattt cctttcttat ttttcactac ttactttatg tttaaaaaag       360
     caatatttta gtgagtgcct tctaatttta ttcaagttaa tttatatact agatttttca       420
     agttcaaagc catatatttc cgcaattact tgccgcttct gcttacaagc taaatcatct       480
     ttgcaaatac atttataaaa aacgcaaata gtttgtgtct tattaacagt tgtcagggtc       540
     attacccgtg caacagctga tctattgtta tcggcgtcga aacgtcgagt cattagtgca       600
     tcgcatattt tttttcatat accctgcttg caataattta ttttttattc gtttttttat       660
     cgcatatttt ttttaaaact ttaatttgct aacggctatt tgtctttaac tatgtctgat       720
     gaaaagattg ctaaattagt taaacggcgt agctgtatga aatctaagtt gaccgttttt       780
     ggtaattacc tacatacttt ggaaagttgc aatgaactta gtagtttaca gcttttggat       840
     ttggaaacaa ggttcaataa gtttggtagc ttatacgatg atttcgacaa tttacagtgc       900
     gacatcgaga tgttgtcgga ggaccccgac aatgagagtg gagagcgtga gcagttcgag       960
     aatcagtatt acaagctggt ggcagcggcg cggagactac tcggtgctcg ccctcaccag      1020
     tcttctcatc ttcaggatgg atccgtcgcg agttgcgagg acggacaatc aggtggtttc      1080
     agatctaatt gcgttagatt gccgaaaatt aatttgccta ccttccacgg tcactatcaa      1140
     aactggcttg agtttaggga cacttacttg tcattaatac atttaaggcc cgacattgat      1200
     aatataaata agctgcacta tctgcgagct tcactaaaaa gtagtgcatt attagtgatt      1260
     gataatttgg attttaaggc ggaaaattac gaggccgctt ggaatttatt gtgtagtagg      1320
     tacgacaaca aaaggttgct tgtgaataat catgttcatg ccttatttaa tgttgaacac      1380
     ataaaacagg aatcatgttc agcaatacgc catcttgtag acgtaactaa taaaaattta      1440
     cgtgcgttgt cgacattaga tcaaccaact caatattggg acacgcttat cattcacatg      1500
     atggcagaca aattagatag tgttacacat agggaatggg aagaacatag aaacacctta      1560
     agtgatcctc catctttagc tatttttgta acattcctta gtaacagagc agatttattg      1620
     gaaaccttgc aagaaaataa gggtaaaatt aaaacacaca atagaaattc catagataat      1680
     ttaaaaagta attttaatca acctacatct actaattcta aacacactca aaatacatat      1740
     ttacaatata atacaaataa aaatcataat agttcttata aaaaatcttt aacttgtcca      1800
     atgtgtaatc agaaccattt cttattcagt tgtgaagcat tcagatcatt gtcaattgaa      1860
     gatcgtagac aaacggctaa agaagccaaa gtctgtctca attgtctacg accagggcat      1920
     gttgagtcaa gatgcaatct ggttccttgc aaatattgca agaaaaagca tagcacgctg      1980
     cttcatatgc atgaggcaga aactaaactc gagcccgcta ttccagttag cagtttggat      2040
     agtttctcta gctcaacaga tgttatggaa agtagtactc ctcagaatgt tttactatcc      2100
     acagcgctcg tgagggtggt ggacatcaag ggcgaggtgc acacagctcg ggtactgctc      2160
     gataatggca gcacagccag cttcgtgtca gaattccttt gcggtaagct gggtttgtcg      2220
     cgacgcgcta cgagcaccac agtgacaggt ataaataata atacttcgca tagttcacaa      2280
     tcttgcagcc ttactattat ttccaattat gacgagaaat atagactttc tgtggactgt      2340
     catattttac ctcatgtcac caaagtttta ccgtcttctt ttataaacat agataacatc      2400
     cccctccctt caggcataag cctagctgac ccttcattta atataccgtc agcaattgac      2460
     atcttacttg gggctgatgt attttggtcc gtcttgtgta ataattccat agatttgggt      2520
     aaaaatcaac ccaaattata tgaaaccaaa ctgggttggc tggtgtcagg gtacgttgcc      2580
     cgccataagt cacacactcc tcttgtttgt aattttttga gtgaagaagc tgatccagac      2640
     ttatcccgtt tctgggaatt agattccgta gcaatcaagc actccctgtc tcctgaggag      2700
     caggcatgtg aacagagctt tatcaaaaac acctttcgta aagacgatgg gcgcttcgtc      2760
     gttgtcatgc cgctgaagaa ggatccttca gtcttaggcg attcctatca aaaggcgaag      2820
     tgtcggttct tgtctttaga gagaaaactt caaagagacc gtatatttaa ggataggtat      2880
     atggatttta tgcttgaata tgaacgttta ggtcatatga ctgaaaacaa agattcttca      2940
     tttaccactt gtaataatgt gaattacttc ttacctcatc atggcgtagt ccgtgaggaa      3000
     agctcgacaa ctaagcttcg tacagtcttc gatgcatcgg ccactacttc ttcaggtttg      3060
     tctttgaatg acatccaaat ggtaggacca acggtacaag aagatttgta ttccatttta      3120
     gtacgttttc gccaacataa atatgtcgtt actggcgacg tagaaaaaat gtatagagcc      3180
     attgagctta atccttcgca acggcattta caacaaatta tttttcgctt cactcccaac      3240
     gaacctttta aaacttatac acttaataca gtgacttatg gcacggcatc tgctccatac      3300
     ttggccacca agtgcctcgt gagtctagca tctaacgctc ctgatgatga cgtcaagcag      3360
     tcaattcaaa gagactttta cgtagatgat tatttaggag gctcaagttc tataaatgaa      3420
     accataaata tgtgcaaggg agtcatttca gtattaaaat ctgcaaagtt caatttaaga      3480
     aaatttaaat caaatagtca aaccatttta gatcacatct ctccctcttc aattaatagt      3540
     tctaatcaaa ttttagatct ttcagatcct agtacagttg gcacttgtaa aactttaggt      3600
     ctcaattgga tttgtgaatc ggacaccttg tcattttcaa taaatataaa gaatccagtt      3660
     aaaaacgtta caaaaagama tattctttca gtcataagcc aaatctttga ccctttgggt      3720
     cttgtctccc catgtgtgat agaagccaaa atcctcatgc aacaattgtg gattaataaa      3780
     tataactggg acgatgaagt ctcaaaagag ataatggact catggcttgc gtttgttgac      3840
     acccttcctt ctctaaacca actcaaaatt cctcgttggg ttctcagtga tacctgtgaa      3900
     cggtatgaga ttcacgtttt ctcggatgct tcagtggccg catacggcgc ttgtttatat      3960
     ataagatccg tgcagcgttc agggttagta aatgtaaaac ttgttacatc taaaagtaag      4020
     gtagcgccta taaagcccgt gacgatacct cgtctcgagc tttgcggagc attgttggct      4080
     gcgaggttgt gcactaaagt attatcttcc ttaactctcc atgttgggaa atgtcaattt      4140
     tggtgcgact ctaccattgt tttagggtgg ctaacaacgt caccattgca actcaaacat      4200
     tttgttcgca accgtgtaca cgaaattcag gagagcacag agggtcactc gtggggctac      4260
     gtaccgtcga aagacaatcc ggcggatctt gtttcccgcg ggctgaaggc cgattccatc      4320
     agcaattcat ctctgtggtg gtctggtccc actttcttat tgaaagacga actattgtgg      4380
     ccaaaaatgc ccaatcaaag ggagaaacac gatctaccgg agttgatttc atgttctgtt      4440
     gtctgttgta gtactaacgt agatcctatt tgtaatttaa ttaataacac atctaatttt      4500
     atttatttac aaaaaacaat agcatattta caacgattta tttacaactt tagaaacaaa      4560
     tccaacaaac gagccggtca attttcagtc actgaactta aaaattcatt atacttaata      4620
     ttgcacaagg ctcagttgga aatgtttgct gaagaatatg ctattctcaa agcaaagaaa      4680
     tcattgccaa gtaagaatag acttatttcc ctgtctccct atttggatcc aaacaacctt      4740
     atacgcgttg gcggtaggct ggataattct ccatatagtt tcgatacgaa acatcccatc      4800
     ctgttatgta gcaagcatca tcttacaaaa ctcatttttc agtataacca tttaaaatat      4860
     ttacatgctg gtccccagct cttattatcc aatataagac aaagttattg gcctttgggt      4920
     ggtagaaacc ttgccaagaa cattgtggca aaatgtgtac ggtgttgtag gtacaaagcg      4980
     caatgtgctc aacccataat ggggcaatta ccatcgtcac gcactgaatt attatatccg      5040
     tttttgcact gcagtgttga ctatgcagga ccagtgatga tagcggacag gaagggcaga      5100
     ggttgcaaac taattaaatc atttttggca atctttgtct gcaacgccac taaagcctgt      5160
     catatcgagc tcgttacggc tctatctgga gaagcttata tagccgctct caatcgcttc      5220
     gtatcacgtc gtggaaaacc acatagtatc acgtcagata atggcacaaa ctttgtcgga      5280
     acatcaaatg aactatcaaa gattctagcc agatctgatc ttgaaggtca attggctctt      5340
     gagggaattg aatttaaatt cattccggca tatagtcccc acttcaacgg cttagctgag      5400
     gcagctgttc gttctataaa acatcattta aaaaggttgc tacataccac tcatttcacc      5460
     tatgaggaaa tggctacttg cctcactcaa atagaagctg ttttaaactc ccgtcctctt      5520
     acccctcttt cctcaaatcc tgttgacttt tccgcactta caccttccca ctttttaatt      5580
     ggacgtccac ttaatgctct acctcattca caggattctg atgtagatat tgggaagatc      5640
     aaccgcctgg aacgtttcaa gagaattcaa gtaattcgtc gacatttctg ggaccgtttc      5700
     tctctcgaat acgttgctct tctccagcag aaggtgaagt ggcattcttc aagggcggag      5760
     ctgaagttgg gatccctggt cttgataaag gagagagcac tccctccttc actttggagc      5820
     ttaggacgag tgaccaaagt ataccctggc agcgacggtg tttccagagt tgcagaggtc      5880
     ctaacgaaaa gaggcactat caggagggcg tttaataata tttgtcccct tccagaattt      5940
     tgaagttcct tcaacccggg gagca                                            5965
//
ID   BEL-26_SpEx-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-26_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-308
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6934-6934 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 308 BP; 74 A; 75 C; 80 G; 79 T; 0 other;
     tgttgggaat caaacccaac ataccctcgg cagacgcgat agcggccgcc taccttctta        60
     tgagtcgtcg tggcgagctg cgcggcggag cgcggtgcgg tgagggggcg acggagcgag       120
     aggggcagag accttttttt ttctcttcgc gcttggacat cacggacgac ggtcgacata       180
     attattcgct ataatttaaa ttaattgttt gtccgcgata tctttaaatt tgtaattgga       240
     aaggcaataa accgcgccta tcaaatccat acagtccact tatttaccat cccctagtgg       300
     tgcgaaca                                                                308
//
ID   BEL-270_AA-I repbase;    DNA;    INV; 6210 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-270_AA_;
KW   BEL-270_AA-LTR; BEL-270_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6210
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2548-2548 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5257-5817] - Integrase core
CC   'GCTTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..5385
FT                 /product="BEL-270_AA-I_1p"
FT                 /translation="MSGKGSKSGSGRGHLVGGTGVTHLAETPAGEIIDKAA
FT                 VAPINSPTVVVCTTSTAAAATSDAVGETCLGAGASRTADTVSTHSPDPSRT
FT                 GNPLSTLSSTHQVNADIANILGAKRKQSALLSEPKTSLGLSNIRENVVVRR
FT                 NPDRRARPPRYNNCELCATSDNSRMVQCDGCEKWFHFSCVEVTEGIAEISW
FT                 ICPLCPVVESNNQKRTPANGTQKATPAINPPPKDNSDKTSSSKKSSKKSQQ
FT                 RKMELRLQKLEEQKKLEQRFLDEKFRILEELESDCETNLDDEDLEKMSDVS
FT                 QWVRDTERGGAVEDSGVIEEDESRIPSELVERFATINLRQADQQRRSQVGR
FT                 RNTLPDFVPAQRSTPHGQPSSLLMNPTSTRFTAPPMPTQRQQHPPPAFRPS
FT                 QPEPIPAEETICILNRSQMAARQAVSKDLPEFDGNPEDWPLFFAMYSSSTQ
FT                 MCGFSNEENMLRLRKCLKGKALEAVKCRLLHPSNVGGVLSTLKMLYGRPEA
FT                 IVQAAIRKVRSLPSPEIDRLESLVNFALTVENLVATIEACGIQDFMYNASL
FT                 KFELVERLPPTLRLDWAKYTRGNPAPNLMDFSSWLYYMAEDASSVIQTSIN
FT                 APRGRGTEKDAYINVHSESSNNRSGSPEAQSCEVHSRLQDTSKECVVCKGA
FT                 CPSIPKCKRFIELSYESKWAVVREAKLCRKCLRKHNGTCRQQTKCGINGCN
FT                 YLHHPSLHSEISEASRRSSSVEAATNTSCNVHQTHTNDVLFRIVPVVLYGP
FT                 SKTIQTHAFIDDGSELTLIEHSLAQELGLQGCPKALCLKWTGDTMRMENES
FT                 QKVELAISSTRNTSQTYRMADVRTIHELKLRPQTLLASEVQGRYAHLTGVP
FT                 FDSYTEVSPRILIGLDNAQLGHALKSREGKQSEPIAVKTRLGWIVYGNCSP
FT                 SKQLESHVNYHAVQVCECNGATDESLHTAMKNYFTLDSMGISKPEKLPLST
FT                 EDQRAMEVLEAVTQPKNGQYESGLLWKYDNVRLPDSSKMALKRWECLERRM
FT                 KNDERLAENLRAKMSEYVQNGYARKLTADELTIRQPREWYLPVFPVHNPNK
FT                 PGKLRLVWDAAATAQGISLNSMLLKGPDQLTSLLSVLIQFREFRIAVCGDI
FT                 KEMFHQILMREEDQHCQRFYWKQNASEGMPDVYVMKVMTFGACCSPTTAQF
FT                 VKNLNAKRFERQSPEAVDAIVKKHYVDDMLVSVETEEEAIKLAQDVKRIHA
FT                 AGGFEMRNWLSNSPIVSASLQEVTAAEKSLGEENLTEKVLGLWWNTATDCF
FT                 TFKVSPRYDEDLMSGRRRPTKREVLRTLMMMFDPLGFMSHFLMYLKVLLQE
FT                 IWRSSVNWDTPIEEPQFQKWLTWLKVLPEVANVQIPRCYRTSVMLDNTCKV
FT                 KMHTFVDASENGFAAVVYLRYEKADVIETSFVCAKTRVAPLKFLSIPRSEL
FT                 QASVLGMRLANSIAQSLSIGLSGRYFWTDSKDVLCWLNSDHRRYNQFVAFR
FT                 VSEILESTDVNEWRWVPTRQNVADEGTKWTRFPDLNASSRWFQGPEFLRKP
FT                 EVEWPTVLRYGATDTELRAHLLTHVPVAESIITPQNFSKWTTMVRSTAYVF
FT                 RFICNSKQLVKLKQRSVGPLSQQELIRAENFLYRFAQTDEYADEIAILYGN
FT                 RLSETEKKKIPKSSSIAYLCPFLDESDVLRVRGRTGACELIDYDAVNPIIL
FT                 PRNHHVTQLIVHHFHRKYHHQNHNTVLNEIRQRYRIPRLKSVYHKIRRQCQ
FT                 KCMNEKAAPQPPMMSDLPPARLAAYSRPFTHMGVDYFGPIIVSANRKREKR
FT                 WVLIATCLTVRAIHL"
XX
SQ   Sequence 6210 BP; 1768 A; 1561 C; 1501 G; 1378 T; 2 other;
     atttacaaaa ttcgtttttg gctaacgatg tctggcaagg gatcgaaatc tggatctggc        60
     cgtggccatc tggtaggagg aacaggtgta acacaccttg cagagacccc ggcgggtgaa       120
     atcattgaca aagccgcagt tgctccaatc aacagtccca ccgtagttgt atgtacaaca       180
     agtacagcag cagccgcaac gagcgatgca gtgggcgaga catgtctggg agccggcgca       240
     tcgcgcactg cggacaccgt tagtactcac tcgcctgatc cgagcaggac aggaaacccc       300
     ctatctacct tatcatccac ccaccaggta aatgctgaca ttgccaatat attaggagcg       360
     aagcgaaagc aatctgcttt gctatccgaa ccgaaaacta gtttaggcct gtcaaatata       420
     cgcgaaaatg tcgttgttag acgcaatccg gatcgtcgcg cgcgtccgcc tcggtacaat       480
     aattgtgagt tgtgtgcaac tagtgataac agtagaatgg tgcagtgtga tggttgcgag       540
     aaatggttcc acttctcttg tgtggaagtt acggaaggta tagcagaaat cagctggatc       600
     tgcccactgt gtccggttgt agagtccaac aaccagaaac gaacgccagc taacggtacc       660
     caaaaagcaa cgcctgctat taatccaccc cccaaagata acagcgacaa aacgtcttct       720
     agcaagaaga gtagcaaaaa aagtcaacag cgaaaaatgg aattgagact acagaaactt       780
     gaggaacaga agaagctaga gcaaagattc ctggatgaga agtttagaat actggaagag       840
     ttggaaagtg attgcgagac gaatttggat gacgaagacc ttgagaagat gtccgacgtt       900
     tcacaatggg tccgagacac agaacgcggt ggggcggtcg aagactctgg agttatagaa       960
     gaagacgaat ctaggattcc ttctgagctc gtcgaaagat ttgcaacgat caacctacga      1020
     caagcagatc agcaacggcg ttcgcaagta ggaaggcgta atacgttacc ggacttcgtc      1080
     cccgcgcagc gttctacacc acatgggcag ccatcatccc ttctcatgaa tccaacatcg      1140
     acacgtttca cagcaccccc tatgcccact caaagacagc agcatccacc tccggcgttt      1200
     cgtccatcgc aacctgaacc gatccctgcg gaggaaacca tctgtattct taatcgaagt      1260
     caaatggctg ctcgacaagc ggtatccaaa gatctaccgg agttcgacgg aaaccccgaa      1320
     gactggccac tgttcttcgc gatgtattct tcatcgacac agatgtgtgg attctccaat      1380
     gaggaaaaca tgctgcggct acgtaaatgc ctcaaaggaa aagcactgga ggcagttaaa      1440
     tgtcgattac tacatccttc gaacgtggga ggagttcttt cgacgctgaa gatgctctac      1500
     ggccggccag aagcaatagt ccaagcagct atacggaaag ttcgttcgct accatcccct      1560
     gagattgacc gactggaaag cttggtcaac tttgctttaa cggtcgaaaa tctggtcgca      1620
     acaatagaag cctgcggaat acaggatttc atgtacaacg cttcgctcaa gttcgagttg      1680
     gtggaacgat tacctccaac gttaagatta gattgggcaa agtatactag aggtaacccg      1740
     gcccctaatc ttatggattt cagttcctgg ctctattata tggcggagga tgcaagctca      1800
     gtcatacaga cgtccatcaa tgccccaaga gggcgaggta ccgagaagga tgcctatatc      1860
     aatgtacatt cggagtctag caataataga tccggatctc ctgaagcgca atcatgcgaa      1920
     gtacattcca gattacagga cacatcgaag gagtgcgttg tgtgcaaagg tgcatgtccg      1980
     tcaatcccaa agtgcaaacg gttcatcgaa cttagctacg agtcaaagtg ggcagttgta      2040
     cgcgaagcga aactgtgtcg taagtgtctt cgtaagcaca acggaacgtg tcgacaacaa      2100
     actaaatgcg gtatcaacgg ctgtaattat ctgcatcacc cttcgcttca tagcgagata      2160
     agcgaagcat caagacgttc ctcgtctgtg gaagctgcta caaataccag ttgcaatgtt      2220
     catcaaacgc atacgaatga tgtgctgttc cgcatcgtcc cagtcgtgct ttatggtcca      2280
     tcaaagacga ttcagaccca cgccttcatc gatgacggct ccgagcttac gctcatagag      2340
     cactcccttg cacaggagct tggactgcaa ggatgcccca aagcactctg cctcaaatgg      2400
     actggcgata ctatgaggat ggagaacgaa tctcaaaagg tggaactggc aatctcctcc      2460
     acgaggaata cttcccaaac gtataggatg gcggatgttc gcacaataca tgaactcaaa      2520
     ctacggccac aaactctgtt agcctccgaa gtgcagggcc gatacgctca tctgactgga      2580
     gtccctttcg attcatacac cgaagttagt ccacgcatct tgattggcct ggacaatgct      2640
     caactaggac atgcgctgaa aagtcgtgaa ggaaaacaat ccgagccgat agccgtcaaa      2700
     acacgtctcg gctggatagt gtatgggaac tgctcgccta gtaagcaact agagagccat      2760
     gtgaattacc atgccgtaca agtgtgcgag tgcaacggag ccaccgacga aagtctccat      2820
     actgcgatga aaaactactt cacacttgac agcatgggaa tttccaaacc tgaaaagctg      2880
     cccctctcca ctgaagacca acgtgctatg gaagtgctag aagcagtaac gcaaccgaaa      2940
     aacggccagt acgaatccgg tctcctatgg aaatatgaca acgtaagact tcccgacagc      3000
     agtaagatgg ctctcaaaag atgggagtgt ctggagcggc ggatgaagaa cgatgaaaga      3060
     ctagcagaga atcttcgagc aaaaatgagc gaatatgttc agaatgggta cgcccgaaaa      3120
     ttaaccgcag atgagctcac aattcgtcaa ccacgtgagt ggtatctgcc agtgtttcca      3180
     gttcacaatc ccaacaaacc cggaaaactg agacttgttt gggatgctgc agcaaccgct      3240
     cagggaatct ccttgaattc gatgctattg aaaggacccg atcaactaac atcattactg      3300
     tcagtcttaa tccagttccg agagttccga atagcggtct gtggagacat aaaagaaatg      3360
     ttccaccaga tcctaatgag ggaagaagat cagcactgtc agcggttcta ttggaaacag      3420
     aatgcaagtg aaggcatgcc ggacgtatac gttatgaagg taatgacctt cggcgcttgt      3480
     tgttcgccca caaccgccca atttgtaaaa aacctcaacg caaagcgatt tgaacgccag      3540
     tctccagaag cggtcgacgc cattgtaaaa aagcattacg ttgacgacat gcttgttagc      3600
     gtcgagacag aggaagaagc cataaagtta gctcaggatg tgaaacgtat ccacgctgcc      3660
     ggaggctttg aaatgcgtaa ctggctttcc aactcaccga tcgtttcagc atctctgcag      3720
     gaagtcacag ctgccgagaa gagtctggga gaagaaaatc tcaccgaaaa agtgttggga      3780
     ctttggtgga acacggctac ggactgcttc actttcaagg tgtctccacg atatgacgag      3840
     gatcttatgt ccggacgccg ccgacccact aaacgtgagg tacttcgcac tcttatgatg      3900
     atgttcgacc cgcttggctt tatgtcgcac tttttaatgt acctgaaagt actcctgcag      3960
     gaaatctgga gatcgtcggt taattgggac acccctatcg aagagccaca gttccagaaa      4020
     tggctgacat ggctaaaagt tctgccagaa gtagccaacg ttcaaattcc aagatgctat      4080
     agaacatctg taatgctaga taacacctgt aaagtcaaaa tgcacacctt cgtggacgca      4140
     agcgagaacg gcttcgcagc cgttgtgtat ctcagatacg agaaagcaga cgtgattgaa      4200
     acttcattcg tctgtgcaaa aacaagagtg gctccgttga aatttctgtc tattccccgc      4260
     tcagagttgc aagccagcgt ccttggaatg cgcttagcga acagtatcgc tcagtcactc      4320
     tccatcgggc tttcgggacg atatttctgg accgattcca aagatgtttt gtgttggttg      4380
     aattcagatc atcgaagata taatcagttt gtagcattca gggtgagcga aattcttgaa      4440
     tctactgacg ttaacgagtg gcgttgggtc ccgacaagac agaatgttgc cgacgaaggg      4500
     actaagtgga cacgctttcc tgacctaaac gcgtctagcc gctggtttca ggggccggag      4560
     tttcttcgaa agcctgaagt agaatggccc acagttttaa ggtatggagc gacagatact      4620
     gagttacgag cacatcttct tacgcacgtt cccgtggctg aatcaatcat aactccgcag      4680
     aacttctcca agtggactac aatggtgaga agcacggcat acgttttccg gtttatctgt      4740
     aattcgaagc aattggtcaa gttaaaacaa cgatccgtgg gaccattatc gcagcaggag      4800
     ttgatacgtg ctgaaaactt tctctatcgg tttgcgcaga ccgatgagta cgccgatgaa      4860
     atcgctattc tttacggcaa tcggctaagt gaaacggaga agaagaaaat tcccaagagt      4920
     agctctattg cttatctttg tcccttcctc gatgaatcgg acgtgctgag ggtccgtggt      4980
     cgaaccggtg cctgcgaact gatcgactat gacgcagtga accctatcat tcttcctcgt      5040
     aatcaccatg taacacagct gatagtgcat cactttcatc gcaagtacca ccaccaaaac      5100
     cataacaccg tcctcaacga gatccgtcag cggtacagaa ttccacgcct caaatctgta      5160
     taccataaga tacgaaggca atgtcagaag tgcatgaacg aaaaggcagc accccagcca      5220
     ccaatgatga gtgacttgcc accagcacgg ctagctgcct actctcgtcc gtttacgcat      5280
     atgggggtgg attattttgg gccgataata gtctctgcaa atcgaaaaag ggaaaaacgt      5340
     tgggtgctga ttgctacctg tctgaccgtc cgcgccatac acctgnaaat cgcacacact      5400
     ctcagtaccg attcctgcat tacggccctg cgcaacgtca tcgccagaag aggcacaccg      5460
     gcagtcatct acagtgatcg aggcactaat ttccgaggta cctgcaaaga gctgaaagcc      5520
     gccttgcaga gcctagatca tgaacgtatg atgaccgagt tcacaacgcc ccatacaagt      5580
     tggagcttca acccgccggc ctccccgcac atgggcggag cgtgggagcg tttgatccga      5640
     acagtcaaac agaatctaan gaagttgctc ccagaccgct cgctatcata tgaagtcctc      5700
     gaaaacctac tggtggaagt ggagaacatc atcaactctc gaccactaac cagtattccc      5760
     ctggaagacg acgaatcccc agtactaacc ccaaaccact ttttgctggg ttcgtctaac      5820
     ggtctaaagc cactagtacc tctcgacgat agccctgtgt cactccgcaa ttgctggcaa      5880
     cgctctcagg tcctagccaa ccagttctgg agacaatggc tccgagacta tctaccatcc      5940
     atcacacgcc gtaccaaatg gttcgagcca gcgaaaccca tccaagctgg cgatattgtc      6000
     atcatcgtgg acccaaacct gccgcgcaat tgctggccta aagggcgcgt gatagctacg      6060
     aaaccaggaa tcgacgatca ggtaaggtcc gccaccgtcc ttaccgctag cggaatctac      6120
     gagcgaccag ccctgaagct cgccgtgctc gacataggcg cttgtaagaa tacacctctg      6180
     gaggactatc ggcgtattcc ggggggggag                                       6210
//
ID   BEL-270_AA-LTR repbase;    DNA;    INV; 724 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-270_AA_;
KW   BEL-270_AA-I; BEL-270_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-724
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2549-2549 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 724 BP; 264 A; 146 C; 115 G; 199 T; 0 other;
     tgttaactcc gccacgtcga gagatccatc aaaccccaat ggtccccttc caacgagctc        60
     cgacgggctt atacggtcac acccatgaat caaccaaggg attgtcccgg gttaaaaaga       120
     acagaacaag ggcaaactat cgactacgaa ggagacagaa acgtaaacag aaatcgtgca       180
     taaaaagtga ttgagaactt atcttaaatt gttgaaattg ctcttaaaac tatattgaat       240
     ttacttgaac ttactttaat ctatgaatta ccgctagttg ttcattgcta tacaaggtat       300
     tgctggttga cgaacgattt ataggagatg ttctggttaa aatacttaaa ctaaggttat       360
     tctatacagc tacaactatt gaatctaact aaactataca atcacccatt tgtacctaaa       420
     attagttaaa cttactaaag gtgagacatt gaattcttta tcaaaattga aatcactaaa       480
     aactaaaaaa ctaaacctaa aacacaaatt tgtacagtac aatcaaggtg atcagtgcgc       540
     tgctaggaca catcgtccag tgtgaagaat tgctgaggta gcgaatcaca aaacgtaaga       600
     tttaagtttc catattcact atttacgtaa cttacaccta aaatccattc aggaattttg       660
     taattcaacc cgattcgccg gaataaatta acaaaatcaa cgattcgtct atcgcccatc       720
     aaca                                                                    724
//
ID   BEL-271_AA-I repbase;    DNA;    INV; 6242 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-271_AA_;
KW   BEL-271_AA-LTR; BEL-271_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6242
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2550-2550 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4909-5490] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           508..5862
FT                 /product="BEL-271_AA-I_1p"
FT                 /translation="MASLRELCKIERGYLDSMANVEAFVENFNAQRDKAKV
FT                 ASRLEHLERLFKEFRDNRAKVEARQEQDLKLSADAEGKEEQLKKDVESANR
FT                 QTRLDFENRYFDVKDFLTSHRANPIAAASSSSSSPPYQTIASRVQLPVFKI
FT                 PPFDGSVRDWLSFRDAFQSMIGKDASLSPIDKFNYLLSVLTKEARTLVESI
FT                 ELTAANFEVAWQMLEQRFENKKILARTLMDSFLNAEPIKRESYEALVSLID
FT                 TYERNLMQLRKIGLDTKGWSHLLAHLLYSRLDAETQRHWEHAHNSREAPKY
FT                 EELVKFLRDHLATLQPLSFSKLRGLESRQDPGKNVSKSKIGSTLTTTTTPK
FT                 KVCPHCQKSSHSPFKCESFNHMSPSQRLESVKKAGLCLNCLSSSHLVRACP
FT                 SSACRVCGQKHHTMLHLRPTSNSSSQGQEPSQSQPTKPTIPQSKPAIAPSN
FT                 NSASSQSQTLATAPMAGPSTSQPVALPASATADSSVVLLSTAVVKIADYNG
FT                 NVQFARALLDCCSERNLLSERLAQKLDLRRQNDPLSLQGVGPSAAVSKQST
FT                 MANIRSRCTDYAVDLKFHILPEFKPILPSNQLSIASWNIPPFVELADPCFF
FT                 EPNRIDAIIGAEVYYRLLLEGFIDLGPELPHLKETVFGWIVSGNINQMDVN
FT                 RSAFTLVCSNADLNKQLTRFWEIESCHSKETLSPEERKCETHFAATTTRNS
FT                 SGRFVVTLPKNLDVLDKLGDSRTVAVRRFLSLERRLHANPSLLDAYAAFIQ
FT                 EYVKLGHMEPIDASREILNPGEKTYYMPHHCIVRPENVTTKLRVVFDASCA
FT                 SDTGVSLNDALIVGPVVQDELYSIILRFRMPRFVIVADLEKMYRQVLVSPA
FT                 DRPLQRIVFRSSPSEPLQTYELLTVTYGTASAPYLATRCLQQLASDGESTH
FT                 PKAAEALSKDFYIDDLLGGVASEEEGITLCRELIDLLSSAGFKLHKWASNS
FT                 PRILQNIPPELREDRSLLELDSSTSPVKTLGLLWQPVDDVFRFKIPTWTED
FT                 AAITKRLVLSEAARLFDPLGLLGPVVLRSKLFMQELWKSKVSWDIPLNDHQ
FT                 QQFWKSFRRDLEILDTFTVPRWAAPHLDAANLELHGFSDASESAYGACIYI
FT                 RTISPNGIVSVNLLTAKSKVAPKGTEKLDPSIRLPRLELCGALLLSHLFEK
FT                 VESSLQNRVRPFFWTDSTIVVHWLSASPSRWKKIVGNRVAEIQQLTASGSW
FT                 RHVPGIDNPADVISRGMSAMELVDHMLWWQGPQWLQQPNRFWPDLVRTSDD
FT                 LFSSAQLQDRPTVSLPTVVQSTIFTVKSSLFSLVRLIAYMRRFCNNAKDPN
FT                 KETRKTGPLSTAELEEALIALVKLAQQESFAEDLHSIRTTGQVKSTSRLKT
FT                 LSPVLVNGVLRTRGRLNYAAVPYAQKHPIILDNKHPFTLLVVQYYHYNNLH
FT                 AGPTLLMATVRAKYWPLRLRDIVRKVTHECVTCFRSRPSVAEQIMADLPPV
FT                 RVTPTLPFLNTGVDFCGPFYLRPPTRRAAPLKSFVAVFVCLSTKAIHLELV
FT                 SNLSADSFIASLKRFAARRGVPQTIYCDNATNFVGARRTLNEFLHLFRTQQ
FT                 NRLDVTRRCSAEGIQFSFIPPRSPHFGGIWEAAVKSLKTHLRRTLANALVS
FT                 TEQFQTLITQIEALLNSRPLTQLSNSPEDLDVLTPGHFLVHRPLTAIPEPS
FT                 YEEVPCNHLSQWQVIQEYLRRLWKRWSSEYLSGLQQRTRWTHERDNIRVGT
FT                 MVLVREDNLPPQKWRFGRVTEVFPGNDGLIRVVNIRTKDGIYKRAITRICV
FT                 LPIPDNYPENQEAP"
XX
SQ   Sequence 6242 BP; 1588 A; 1584 C; 1440 G; 1628 T; 2 other;
     tttatggtcc ttcgaggagc cggattcgtg cggtttagtg gcccaaggtc ggcgaagaaa        60
     tttatctatt gtntgtggtg ataataccac aattagcgtg gtgtcttttg tgctgccttt       120
     tgtcggtggc gtcggcttcg tatgctgtat cggtgttagc ggatccgtta gcagtattgg       180
     agtgattcta cgaaccggtt tccaagccac ggatcatccc agaaacacgg agctttttgg       240
     cgtttccacg gcgcattccg accccttcct cctgtatctg gcaaacctgg tgtgacttgg       300
     gacagttcat actaaagggc agcgtgagta cacctacaac caaggtacga ttatttctaa       360
     aaagaaatat agtttgcatg cgactttcac tatagtaaat aaggaatttg tttgcgattt       420
     caacgatttt ttgggcaatc gactaagcta cgtcttttgg aatttgagtg ggtttgcgac       480
     ttgaattaat atctggcaat aaacaaaatg gcgtcattgc gcgaattgtg taagatcgag       540
     cgtggatact tggactccat ggctaatgtg gaggcctttg ttgaaaattt caatgctcag       600
     cgagacaaag cgaaggttgc ttcccgtttg gagcatttgg aacgtctgtt caaggaattt       660
     cgagataatc gtgcaaaagt tgaggcgaga caggaacagg atttgaaact gtccgctgat       720
     gctgagggta aggaggagca actcaagaag gacgtcgaat ctgccaatag acagactcgt       780
     ttggactttg aaaaccggta cttcgatgtg aaagactttc tcacatcaca ccgagccaat       840
     ccgatagctg cagcttcttc ttcttcttcc tctccgccct accaaaccat cgcttcccga       900
     gttcaactcc ctgttttcaa aattcctccc tttgacggta gtgtgagaga ttggttgagt       960
     tttcgtgatg ctttccaaag catgatcggc aaagatgctt cactttcacc gatcgataag      1020
     ttcaattatc tgttgtctgt gctcaccaaa gaagccagaa cgttagtgga gtctattgaa      1080
     ctaactgcgg caaacttcga ggttgcgtgg caaatgctcg agcaacggtt cgagaacaaa      1140
     aagatactcg ctcggacact gatggacagc tttctgaatg ctgaacccat caagcgggaa      1200
     tcgtatgaag cactcgttag tctcatcgat acttacgaac gcaacctcat gcaactgcgg      1260
     aaaattggat tggataccaa gggttggtct cacctgttag ctcatcttct ctattcccgt      1320
     ctcgatgccg aaactcaaag gcattgggag catgctcaca actcccgtga agccccaaag      1380
     tacgaggagc tagtgaaatt tctgcgggac caccttgcaa cgctgcaacc tctgtcgttc      1440
     tcgaagctgc gagggttgga atctcgtcaa gaccctggga aaaatgtgag caaatctaaa      1500
     attgggtcca cgctcacaac aaccacgact cccaaaaaag tttgtccaca ctgtcaaaaa      1560
     tcctcacact ctcctttcaa gtgcgaatcc ttcaaccaca tgagtccttc ccaaagactt      1620
     gaatcagtca aaaaagctgg tttatgtctt aactgccttt cctcttccca tttggtacgg      1680
     gcctgcccta gctcagcttg tcgtgtttgt ggccaaaagc accatacgat gctgcacttg      1740
     cgcccaacaa gcaacagttc cagccaagga caagagccat cgcaatcgca acccactaag      1800
     cccactattc ctcaaagcaa acctgcaatc gcaccttcga acaattccgc atcttcgcaa      1860
     tcgcaaactc tcgccaccgc gcccatggcc ggtccctcaa cgtcccagcc agtagctctc      1920
     cctgctagtg caaccgccga tagtagtgtg gtgctcctct caacggctgt tgtgaagata      1980
     gctgactaca acgggaatgt ccagttcgcc agagcgcttt tggattgttg ctccgaaaga      2040
     aatctgttga gtgaacgttt ggcgcagaaa ttggacctac gtcggcagaa cgatccgctt      2100
     tccctccaag gtgtgggacc tagtgcagcc gtatcgaagc aatcgacgat ggctaacatc      2160
     cgttcacgct gtacggatta tgctgttgat ctcaaattcc atattctgcc ggagttcaag      2220
     ccaatcttac cgtcaaatca gttgtcgata gcatcttgga atattcctcc cttcgttgag      2280
     cttgcggacc catgcttttt cgaacccaat cgcatcgatg ccatcatcgg agcagaagtg      2340
     tattaccgtc tactactgga aggttttatt gacctcgggc cagagctacc ccacttgaag      2400
     gaaacagttt ttgggtggat agtttccgga aacatcaacc aaatggatgt gaacagatcc      2460
     gcctttacgc ttgtgtgcag caacgccgat ttgaataaac agctaactcg tttctgggag      2520
     attgaatcgt gtcattcgaa agagaccctc tcaccggaag aacggaaatg cgaaactcat      2580
     ttcgctgcca ccacaacccg gaattcctcc ggaagatttg ttgttacatt gccgaagaat      2640
     cttgatgttc ttgataagtt gggagattca cgaactgtag ctgttcgtcg ttttctgtcc      2700
     ctggagcgac gactacatgc gaatccttcg cttttggatg catatgctgc tttcattcag      2760
     gaatatgtta agctgggtca tatggaaccg atcgacgcca gtagagaaat cttgaatcct      2820
     ggagagaaaa cttattacat gcctcaccat tgcatcgttc gtccggagaa tgtcactact      2880
     aaacttcgtg tcgtttttga cgcctcttgc gcttctgaca caggtgtctc gttgaacgac      2940
     gcgctaatag tgggtccagt tgtgcaagac gagttgtata gcatcatcct ccgctttaga      3000
     atgcctcgtt ttgtcattgt cgccgatttg gaaaaaatgt accggcaagt gctagtatct      3060
     cccgccgatc gacctttgca acgcatagtg tttcgttctt ctccttcgga accgctccaa      3120
     acctacgaat tgctgacagt cacatatggt actgcgtcgg ctccgtacct tgcaacccgc      3180
     tgtctccagc aacttgcctc ggacggcgaa tcgactcacc ccaaagcagc agaggcgctg      3240
     tccaaggact tctacattga tgatttgctt ggtggagtgg catcagaaga agaaggaatc      3300
     acgctgtgcc gggaactgat cgatctcttg agttcagctg gattcaagtt gcataaatgg      3360
     gcatccaata gtccgagaat tctacagaac attcctccag aacttcggga agatcggagt      3420
     ctattggaac tagattcttc gacatcgccg gtgaaaacat tgggactgct ttggcagcca      3480
     gttgacgacg tttttcgctt taaaatacct acgtggactg aggatgccgc tataaccaaa      3540
     cgattggtat tgtccgaggc agcacgcttg ttcgacccct taggtctgtt gggaccagtc      3600
     gtgttgcgct ccaaactttt catgcaagag ttatggaaat ccaaggtttc ctgggatatt      3660
     ccnctgaacg accaccaaca acaattctgg aagtccttcc gaagggatct tgaaattctc      3720
     gatactttca ctgtgccacg gtgggcggca ccgcacctag atgcagccaa ccttgagctg      3780
     catgggttta gcgacgcttc cgaaagtgca tacggtgcat gcatctatat ccgcacgatt      3840
     tcgcccaacg gaatcgtctc ggttaacctt ctgacagcga agtcaaaggt tgcaccgaaa      3900
     ggaaccgaaa aacttgatcc aagtattcga ctaccacgtt tagaactttg tggagcgtta      3960
     ctactgagcc atctattcga gaaggtggaa agcagtcttc aaaaccgagt tcgtccgttc      4020
     ttctggacgg attcaacaat tgtcgtacat tggctgtccg cttcaccatc tcgctggaaa      4080
     aaaattgttg gaaacagagt agctgaaatc cagcaactta ctgcgtctgg aagttggaga      4140
     cacgttccag gcatcgacaa tccagcagat gtaatatcgc gtggcatgtc agcaatggag      4200
     cttgtcgatc acatgctgtg gtggcaagga ccccagtggt tgcagcaacc taaccgcttt      4260
     tggcccgatt tagttcggac ttccgatgac ctctttagtt ctgcacaact ccaggataga      4320
     cccacggttt cgctgccaac agtcgtccaa agcacaattt tcacggtgaa atcgtccctc      4380
     ttcagtcttg tcagactgat agcctacatg cgaagattct gcaacaatgc aaaggatcct      4440
     aacaaagaaa ccagaaaaac aggaccgttg tcaacagcag aattggaaga agcattgatc      4500
     gctttggtca aactggccca gcaagaatct tttgcggaag atctgcattc tatccgcacc      4560
     actggtcaag tgaagtcgac atcgaggttg aagaccttat ctccagtgct cgtgaatggt      4620
     gtgctacgta cgagaggacg tcttaattac gcagctgtcc catacgcaca gaagcatcca      4680
     attatcctag ataacaagca tccgttcact ctactagtag ttcaatatta ccactataat      4740
     aatctccacg ctggaccaac tcttttgatg gcaaccgttc gcgccaagta ctggcctctt      4800
     cggttgcgcg atattgtgcg aaaggttaca cacgaatgcg tcacctgttt ccgcagtcga      4860
     cccagcgtcg ctgaacagat catggccgat ttgcctcctg ttagagtaac gccaacttta      4920
     ccgtttctga acaccggagt ggatttctgt ggaccattct acctgcggcc accaacacga      4980
     agagctgcgc cgttgaaatc gtttgttgct gtattcgtgt gtctatcaac caaggcaata      5040
     catctagagt tggtatccaa cttatctgcg gattcgttta ttgcatctct aaaacggttt      5100
     gctgcacgca gaggagttcc gcagaccatc tactgcgata atgcaacaaa cttcgttgga      5160
     gctcggcgaa cactgaacga attcttgcac ctgtttcgca cccagcagaa ccgcttggat      5220
     gtcacccgcc gatgctctgc cgagggaatt caattttcct tcattccacc gcgatcaccg      5280
     cacttcggtg gcatctggga agctgcggtg aaatccctta aaactcacct tcgccgcacg      5340
     ctcgcgaacg cattggtttc aaccgagcaa tttcaaacgt taatcacgca aattgaggca      5400
     cttctaaact cccggcctct aacccaacta agcaattccc ctgaagactt ggacgtcctt      5460
     acgccaggtc acttcttggt gcatcgacca ctcacagcca tcccggagcc atcctacgaa      5520
     gaggtgccgt gcaatcatct ttcgcaatgg caggtaatcc aggagtatct tcgtcgcctt      5580
     tggaagcgat ggtcgtccga atatctttcg ggcctacagc agcgtacccg atggactcac      5640
     gagcgcgata acattcgcgt cggaacgatg gtattagtcc gcgaagataa tctaccaccg      5700
     cagaagtggc gtttcggtcg ggtgaccgaa gtttttcctg gaaacgacgg actcatccga      5760
     gtcgtcaaca tccgtaccaa ggacggtatc tataagaggg caatcacgcg catttgtgtc      5820
     cttcctattc ccgacaatta tccagagaac caagaagctc catagttccg gctaatcgtt      5880
     cgaggttcca gcaacacaag caatgtcgga ttggagggga ccttatggtc tcctcccaag      5940
     ttaagtatct gtttttcttt gctctttttt gtcttctccg ccctaaagtc aactgtattg      6000
     gcaggaaccc tggacttcgg ctaccctacg atcgagatgt gcaatcccaa ctgcatcacc      6060
     cttcccagtt ggtcaagcta cactgagttc aacccgacaa ccgtccagga gactgagtta      6120
     ccgaaagccg aagtgttgaa ttgatgaaaa aagttgaatt tgttatattc taagtagatt      6180
     ttaaaacgaa tcacgataga tagtagttag gattgaaatt aggatttcaa tggtgggcgg      6240
     ga                                                                     6242
//
ID   BEL-271_AA-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-271_AA_;
KW   BEL-271_AA-I; BEL-271_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-323
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2551-2551 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 323 BP; 89 A; 85 C; 69 G; 80 T; 0 other;
     tgttagggcc cgactatagc tagcgaatct accctaatct tcaccaatgt taggatactc        60
     attctctgct ttgttgtaca aagcagagaa gagtagcaca ggcagaacca tctccatatt       120
     gaacaatagg tcattgttag atagcatctc gaaccgtgcg catcgctcta tcgcttcgaa       180
     taaagtttcg agtaccaacg gtcaagtgta ccacgttttt gttcaccgag aagtgccgcg       240
     ttttagctgg tgttaaaccc acgtccgaac gataaattcg ccgcgagtgc cccccacaag       300
     tccggagaac cagctccgaa aca                                               323
//
ID   BEL-272_AA-I repbase;    DNA;    INV; 6602 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-272_AA_;
KW   BEL-272_AA-LTR; BEL-272_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6602
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2552-2552 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5141-5722] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           728..2065
FT                 /product="BEL-272_AA-I_1p"
FT                 /translation="MAPSLRSLSRQERFCIDSMNNLISLINTYDEQRDKSF
FT                 LEGWLQRLEKVFAEFQSIRLQLELREDQEEFTDAAENVSLNEDANRQARDD
FT                 FERNYMKVYGFIVSQLRTPESIPSSSNQNVVVHAGTPADSSFARIRLPEVK
FT                 LPSFDGTLTNWLTFRDAFVSLIDSNPQLKPMDKFSYLVSSLSKDAKRVIES
FT                 IEITSANYSVAWELLEKRFDNKKLVVKTYIESLLSIEPMRKECYDSLARII
FT                 DDFERNLNMIQKMDIDTEGWSVLLAHMLCARLDCATLKQWEQHHNSTAVPE
FT                 YENVLKFLRGHCSILQSLSSSKARIPEPPKSEPDRSMKSKFSHAVTKNSSP
FT                 KTCSFCKQSSHSPFHCETFRKMPISQRFELVKKNSLCINCFSPSHLVKQCP
FT                 SSCCRVCGQKHHTMLHQNTTLRSSAGDPIPTSMPSPPPPTPHPSNRSTAVQ
FT                 P"
FT   CDS           3017..4000
FT                 /product="BEL-272_AA-I_2p"
FT                 /translation="MEDITDSEDLESNDLSYYLPHHCVVRPDSLTTKLRVV
FT                 FDASCATSTGVSLNDGLMVGPVVQDDLVSITLRFRMSRYAIVSDIEKMYRQ
FT                 ILLYYPDRRFQKILWRNSPSEPMRTFQLSTVTYGTSCAPYLATRCLLELAK
FT                 IGETTHPQAARVIPKDFYMDDLLTGVNKIAEGQQLCSQMLDLLQSAGLCLR
FT                 KWSSNCPALLEHLPSDLRDERTVFDLDSSASIKTLGLKWQTTTDTFLFDVP
FT                 KWNESPIITKRIALSDAAKLFDPLGLVGPVIVQAKIYLQDVWRSQIGWDEP
FT                 LAEELQQRWHEFRENLLALRNLSVPRWAVPAVEPTS"
FT   CDS           4415..6106
FT                 /product="BEL-272_AA-I_3p"
FT                 /translation="MDPEQLQATHSWWHGPEWLSKPSRFWPTFVHTSNADF
FT                 PPENLEERQVALPIRTIPPNPIFALRSSYVALLRVVAWIRRFRFNSKLANR
FT                 TQRLSGCLTTVELNDALRCLIGIAQREAFREEFTSLAASGQVKPSSKLNTL
FT                 RPFVDQGVLRVGGRLRNASVPDDRKHPFILPSKHPFTELIARYYHEKLLHA
FT                 GPQLLIASLREKFWPLRARNLARRIVHSCINCFRCRPRTTEQIMGDLPAER
FT                 VSPTLPFLYTGVDLCGPVYYRIPGRKSKPVKAYIALFVCLSIKAVHIELVA
FT                 DLSTSSFLAALRRFVARRGKPKLIECDNALNFRGAARELSELAKQFRSQQT
FT                 QENVTSSCAEDGIEFKFIPPRSPNFGGLWEAGIKSMKTHLKATLGNSILSA
FT                 DQLTTLLSQIESCMNSRPLTQLSADPDDLDVLTPGHFLIHRPLTAIAEPSL
FT                 EDVPPNRLDKWQEVQEFLRRLWKRWTSEYLSGLQPRTKWTREKDNIVIGTL
FT                 VLVKDDGLPPLKWRYGRVTHIFRGDDGNIRVVVVKTKDGEYRRAISKICVL
FT                 PVDQPSTLVDREPTDDH"
XX
SQ   Sequence 6602 BP; 1663 A; 1737 C; 1567 G; 1625 T; 10 other;
     taaaagttgg tccttcgagc cggatcactt gcgcgcgtga aattcgtgat attcggtcga        60
     aagacaatta gtgcattggc gaatctgcac cgacggtgtg cgaagacacg ttnatagtgc       120
     accgtggatg cactgaagat cccacgcgaa cgtngtgagt gcttgtcgtc cgtttacggt       180
     gccgtcgcat aagtccccca aggggtgaan atcgtgaaaa agtgaatccg cacagttcgg       240
     aaaaaattga aatcagtgcg gaaagaagct gtagcagaga tctcgtcgtc gccgttctaa       300
     ccggtcaaag gtcgttgagc taggcctacc tattgtccac ttggcttggg cacgctttgg       360
     tggcttggct tgggtgcgcg caattttcgg cttggctttg gcgctattgt tggaccgtac       420
     aaaggaggta gacaatcagc tatacctctg ggcactgtaa gtacgcatgc atganagcag       480
     catggctgct cagatttgat gatcgatgct agaataataa atttgtgcgg taattgattg       540
     gataatttcg ccgactgagt ggggtttaga gtgagttgag tttgatcctg acgcaaatcc       600
     gtaccgtctt ttgctcatcg atagcgaagt tgtggtggtg caacgttctg gcgagtgtct       660
     ttttgcgatt tttctgttcc gttggttgaa ttttggggaa ttttcggtgg atttctgacc       720
     cttcaaaatg gcaccaagtt tgcgctcttt gtctcgtcaa gaacgatttt gcattgactc       780
     gatgaacaac ctcattagcc tgattaacac atacgatgag caaagggata aaagcttttt       840
     agaaggatgg cttcagcggt tggaaaaggt gtttgctgaa ttccaatcga ttcgtttgca       900
     actggaattg cgtgaggatc aagaagagtt tacggatgct gcggaaaatg tttccttgaa       960
     tgaagatgct aacaggcaag ctcgagatga tttcgagcgt aattatatga aggtgtatgg      1020
     gtttatcgtc tcccaactgc gtacccctga atccattcca tcttcatcaa accaaaatgt      1080
     cgttgtgcac gctggcacac ctgcggactc ctcgttcgcg cggataaggt taccagaggt      1140
     gaaactacca tcctttgacg gaaccttaac aaactggctt acctttcgtg atgctttcgt      1200
     cagtttaatc gattcgaatc cccaattgaa gcccatggac aaattttcct acctcgtttc      1260
     atctctatct aaggatgcaa aacgagtgat cgaatcgatc gaaattactt cggccaatta      1320
     ctcagtagct tgggaactac tggagaagag gttcgacaac aaaaaacttg tcgtgaaaac      1380
     atatatcgag tctttgctgt ccatcgaacc gatgcgcaag gaatgctatg attccttagc      1440
     gcgcattatt gatgattttg agcgcaatct taatatgatt caaaagatgg acattgatac      1500
     cgaagggtgg agcgttcttc tcgcgcatat gctttgtgcg cgtttagact gcgccacgct      1560
     caagcagtgg gagcagcacc acaactcaac ggcagttcct gagtatgaaa atgtcttgaa      1620
     attcctgcgc gggcactgct caatattgca atcgctgtcg tcgtcgaagg ctcgtattcc      1680
     agagccaccc aaatctgaac cagatcgatc gatgaaatcg aagtttagtc atgctgtaac      1740
     caaaaactcc tcgccgaaaa cctgttcgtt ctgcaagcag tcgtcgcatt ccccttttca      1800
     ttgcgaaaca tttcgcaaga tgccaatatc ccaacgattt gaactagtaa agaaaaattc      1860
     gctttgcatt aattgcttct cgccatccca cctcgtaaaa cagtgcccgt ccagctgttg      1920
     tcgagtgtgt ggacagaaac accatacaat gttgcaccaa aacaccacac ttcgttcgtc      1980
     ggctggtgat ccaatcccga catcaatgcc atctcctcct cctccaactc cacatccgtc      2040
     caatcgaagt actgcagttc agcctcngcc ctcctcgcct cagcctcttc cgccaccaaa      2100
     tgcagtcgct ccatccacca gtggtccatc tactagccat gcaccaatgg ctcttctcgg      2160
     aagtgttcga accgttcctt tgactgtctt gctacaaact gcgatggtga agattgctga      2220
     ttgcaacgga tatgcggtat gggctcgtgc tttgttggat ccagcgtcgc agatcaactt      2280
     gatgaccgtg cagttgtcgc agaaactgaa gcttcgtcgt atcaaaaccc accaggaaat      2340
     cggaggcgtt gggaatgcta ctgtcgtttc gtctcatgct gttgatgcaa gaatcgagtc      2400
     ccattgttcg agtttcgtcg cagatttctc gttccatgtg ctgccaggta taacacggga      2460
     gttaccagcc aaggagttga acacgcaaac gtggaacatt cccgctaaca ttgttctggc      2520
     agatccgacc ttccatcaac ctggtcctat cgacatgata ctaggaatgg aagtttacta      2580
     cgaacttgtc gaagaaggtc tagttcgtct aggacccgat cttcccgtac tgcagaaaac      2640
     cgtgctcgga tgggttgttt cgggcaaagt tggttcatct ccttcgccta aaatcagctt      2700
     tgtccacgtc tgcagcatca cttccctcga agatcaattg gcacgctttt gggagcttga      2760
     atcgtgtcaa tccaatagca aactttccgt cgaagaaact ttgtgtgagg cacatttttc      2820
     tgctaccgcc gttcgggatc aaacaggacg atttgttgtc cagcttccga aaagatcagc      2880
     agttctctca actctgggcg attctagaga aatngccact cgtcgttttc tcgctttgga      2940
     aaggcgcctg aacgctaatc cgcagctgaa gcaggcgtat tcggacttca ttgaggagta      3000
     ccatcaactg ggtcatatgg aagacatcac cgattccgaa gacctagaat ccaacgatct      3060
     ctcgtattat ctgcctcatc actgcgtcgt tagaccagat agcctgacta ccaaacttcg      3120
     ggtagtcttc gacgcctcgt gcgctacgag caccggagtt tccctaaacg acgggctcat      3180
     ggtgggaccc gtcgtccaag acgacttggt gtccatcaca ttgcggttcc gaatgtctcg      3240
     gtatgcgatt gtgtcggaca tagagaaaat gtaccggcaa atcttgctct actaccccga      3300
     ccgccgtttc cagaagattc tctggcggaa tagtccgtcc gaaccaatgc gcaccttcca      3360
     actatcgacc gttacctacg ggacttcgtg tgcgccatat cttgcgacta gatgtcttct      3420
     ggagctcgca aaaataggag aaaccaccca cccacaagcg gctagagtga ttcccaagga      3480
     tttttatatg gatgatcttc tgaccggcgt caacaaaata gctgaaggcc agcaactatg      3540
     cagtcaaatg ttggatcttc tgcagtcagc cggactttgt cttcgcaagt ggtcgtccaa      3600
     ctgtccagca cttctcgaac accttccatc cgatttgcgc gacgaaagaa cagtattcga      3660
     tctggattcg tcggcttcca tcaaaacact tggattaaag tggcaaacga caaccgacac      3720
     ttttcttttc gacgttccaa aatggaatga atctccaatc atcaccaaac gaattgccct      3780
     atccgatgcc gcaaagctct tcgacccgct aggacttgtc gggccagtga tagtccaagc      3840
     caaaatctac ctacaggacg tttggcgaag tcaaataggc tgggatgaac cgctggccga      3900
     agaactgcaa caacggtggc acgaatttcg agaaaacctt ctagctctca ggaacctctc      3960
     cgttcctcgc tgggccgtac ctgccgtcga acctacctcg atncaaatgc atggattctg      4020
     cgatgcatca ntgaaggcct acggagcgtg cctctacatc cgcgttgtag ccgacgacgg      4080
     aacgatcagc gtcaatctac tcacggcaaa atcaaaagta gctcctttgg cggattctcg      4140
     aaagcagaaa cgtgtctgct tgcctcgtct ggaactctcg gcggcgctac tgctcgccca      4200
     tttgttccag aaggcacaag ccgccatcag tctcgaagct caatcgttct tctggtcgga      4260
     ttccaccatc gtcctccatt ggctgtccgc tactccatct cggtggaaaa cctttgtagc      4320
     taaccgagtg tcggaagtgc aacacgcaac agttggtgga cattgggctc atgtgcctgg      4380
     atgtgaaaat ccagcggaca taatttctcg gggaatggac cccgaacaac tccaagccac      4440
     ccattcgtgg tggcacggcc cggagtggct gtctaaaccg tcacgctttt ggcctacctt      4500
     cgtccacaca tctaacgccg acttccctcc cgagaacctc gaagaacggc aagttgcttt      4560
     gccgatccgt accattccac caaacccaat atttgcacta cggtcgtcgt acgtggcact      4620
     actgcgagta gttgcgtgga ttcgacgatt ccgcttcaat tcgaagcttg ccaaccgcac      4680
     acaacgcctc tctggatgtt tgactaccgt cgaactaaat gacgccctcc ggtgtctcat      4740
     cggaatcgct cagcgggaag catttcggga agaattcact tctttggcag catctggaca      4800
     agttaaacca tcgtcgaagt taaataccct cagaccattc gttgatcagg gtgtcctgcg      4860
     agtcggtggc cggctccgta atgcatcggt cccngatgac cggaaacatc cattcattct      4920
     gccatccaaa cacccattca ccgaattgat tgctcggtat taccacgaga agttactcca      4980
     tgctggacca cagctgctca tcgcaagcct ccgggagaaa ttctggccgt tacgtgcccg      5040
     aaacttagcc cgaagaattg tacactcgtg cataaactgc ttccgttgtc gtccacggac      5100
     tacggaacaa atcatgggcg atttgcctgc cgaacgtgtc tctccaacgc taccattttt      5160
     gtacactggg gttgatctgt gcggacctgt ctattaccgg atccccggta gaaaatccaa      5220
     gcctgtcaaa gcatacatag cacttttcgt ttgcctgtcg ataaaggcag tgcatatcga      5280
     gctggtcgca gatctctcga caagttcgtt cctcgctgcc cttcggcgct ttgtggcgcg      5340
     acgaggaaaa cccaagctca tcgaatgcga caatgctcta aattttcggg gagcagcccg      5400
     agaattatct gagttggcta aacagttccg aagtcaacaa acgcaggaaa acgtcaccag      5460
     ctcctgtgcc gaagacggca tagaattcaa atttatcccc cctcgctcac caaactttgg      5520
     tggcttgtgg gaggcgggaa tcaaatcgat gaaaacccat ttgaaagcca ctctcgggaa      5580
     ctccatccta tcagcagatc agctaactac actcttgagc caaatcgaga gttgtatgaa      5640
     ttcccggcct ctcacacaac tgtcagcgga cccagacgac ctcgatgtcc taacgccagg      5700
     acatttcttg atccaccgtc cgctaacagc cattgcggaa ccttcgttgg aagatgtacc      5760
     tccaaaccga ctcgacaagt ggcaggaagt ccaagagttt ctccgccggc tctggaagcg      5820
     ctggacctcg gaataccttt ccgggttgca gccaaggacc aaatggaccc gcgagaagga      5880
     taacatcgtc atcggaactc tggttctggt gaaagacgac ggactgccac ctctaaaatg      5940
     gcgctacggc agggtgactc acatcttcag gggagatgat gggaacatcc gcgtcgtcgt      6000
     agtaaaaacc aaggacggag agtaccggcg cgcgatttct aaaatctgcg tgcttccggt      6060
     agaccagcca tcaacgctcg tagaccgcga gcccactgat gaccactgat gatctaccat      6120
     cgcagtgttc gcactgcgca acgaccgggg gcctgcgggc ctccgggcca tgtaagtcta      6180
     atgtatttaa tgaactttca aaaaactcaa ggaatttttg tctcccacca tgaccgaccg      6240
     acggacgagt gccacaatcc gtgggcacga gcgctacgac ccacaaccac agcgctggcg      6300
     attcgataga cgacgacgac gtaaggaagg aaaagctccg tgatgatcga gcaagccatt      6360
     ccggctcagg atcgttgacc cgaagccagc tgatcgaaca aggtcgataa cccaggatgt      6420
     aaacatcaac agttcatcgg agaaggtcgg taacctctag atatcaacag aaaaccgatt      6480
     agtcacgtgg tatgaatacg aacgtacccg aattgaantc gaatcagcta gtaaacagaa      6540
     ccgataccgg tcgccatagg gtagataggt taaaaactag gtttttaacg gtggccggca      6600
     ta                                                                     6602
//
ID   BEL-272_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-272_AA_;
KW   BEL-272_AA-I; BEL-272_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2553-2553 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 207 BP; 71 A; 46 C; 32 G; 57 T; 1 other;
     tgttaggtat taattatatg gaatcaccct aacggtcact caattgaaac catattcaac        60
     cctttctaga attagtcaaa tacaaaccac aaaccaanaa gcatctactg tgttattccg       120
     tacaagtaaa ttagtgagcc aataaatcgc gaaagtttag ttcaaacccc agttcgccgc       180
     gttgagtgtt tgtcgcaaat ccgaaca                                           207
//
ID   BEL-273_AA-I repbase;    DNA;    INV; 5783 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-273_AA_;
KW   BEL-273_AA-LTR; BEL-273_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5783
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2554-2554 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4764-5348] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2382..5249
FT                 /product="BEL-273_AA-I_1p"
FT                 /translation="MSKFWETEAIPEPRKMTEDEQAAERSFQETCRRLPDG
FT                 RYEVGLPLRKSIDELGESETMALRRFVQVERRLIHNPNVYEQYRAFMADYH
FT                 DQGHMVKTNQKIDGAYFMPHHAVFNPASTTTKTRVVFDASATTTTGTSLND
FT                 HLFVGPVVQRKLADTVLRFRIPKIAFTADITQMFRQIVVRPQDRKWQQIFW
FT                 RSHPDDFLEVYQLATVTYGTACAPFLATRVLKQLCEDEIERFPLASKAGTE
FT                 DYYMDDLLSGADTIEEAVAMQAEFVEMMASGGFVLHKWASNHPALLQSVPN
FT                 SDNEQIAFFEDEKTTRALGLTWQPKNDVFLTKLHEIQFQTGQPTKRSVYSD
FT                 IAKLYDPLGLLGPLIFAAKVKLQKLWHLELDWDETLSTDEAESWECFRNQI
FT                 IQMGEISIPRCVLPYKSPTQIELHGFCDASDLGYGACAYIRSVDWTEDCSI
FT                 LLLTSKSRIAPLKNAKLTTARLELCGALVLARLISNITQNLSLTFSRITLW
FT                 SDSTTALAWIRTDPSRLKTFVSNRVIDIQNLTPNMEWRYVNTHDNPADVLS
FT                 RGLVPSEIKDCEQWWTGPPFLRKNETFWPCRPQNTPAEQLPETKNIALSLT
FT                 VTDPPVPFRLFETESEFRKMQRKMAWVLRFIDHVRKGNKREHRHGELTVPE
FT                 LQQATVALTSIAQREAFPDDIKRLQSGKVIHPKGKLITYSVFLEESQFNVL
FT                 RVGGRIRHATLPVGQKHPMVLPSGHPFTLALIRAYHVEMLHAPQQMLLATL
FT                 RRQFWVLHGRSTVRQVIRKCVTCFRAKPISMQQKMGDLPKSRLEGVYPFLN
FT                 TGVDFCGPIYIRQHNKRSTVTYKAYVAVFVCFATRAIHLELVGDLTADAFI
FT                 SALHRFVSRRGKCAKMFSDNGLNFVGSKNKLKEMYDMFRSQQLKGKLDDFC
FT                 TKSAIEWHLIPPSAPHFGGLWEAGVRSAKYHLKRITGTANMNFEEYTTVLT
FT                 R"
XX
SQ   Sequence 5783 BP; 1560 A; 1442 C; 1396 G; 1364 T; 21 other;
     tataaaagtg gtccttcgaa ccggatttga ccggtggatc tgtgtcggac atttgaggca        60
     gtttggtgaa gtgaccacag aaaacgtgga actcggacgg gagtgcatgg gcattgtgtg       120
     attgtgaaat ggacgctgga cattgtgcgc cttttgtgtg gaagtgaaca attaaacaat       180
     tgaaaaatcg aacgttccat aaaaaattga actggttgga tgcatgtgtg cttgcggaaa       240
     gagtgaaaaa tcaacgtaca gagattggga aaacgtgctg tgaaggtcag aagcctgcgg       300
     tgttgtgcgc aattgaaaat tccagctgga tcgccgcgtg gtttgatcgc tgatgcatgt       360
     atgcctttca tgcctttcag gtcggtcccc taagtggaat tggtaaggtt agaaatcagg       420
     taagatcgtg caagtgggtg cgttgtttcc gggagtaaag tagccaacga tggccgccga       480
     gaaaaggatt ctcttgtctt catattctcg catgatggac agtattgagt cccgtgccag       540
     caaattgctc attttcgtgc gttctttcga ttccgagaag caagacaagt ctcttctcga       600
     agacaagcta cagtcggttg atgaaatgcg ttcctttttt catgagacag aagtgaagtt       660
     gtacggattg ttgaaagaag acgaggtaga agattggcaa atgaccagtg aaagggtaga       720
     agacatgctc gacgagatcc gccatcttat ccgtagccag cttcgtgatt tagatccccc       780
     gaaacccgtt tctgctcaaa tttctgggac ctcggctccg gtttcccacc ccaaactgcc       840
     agatataccc ctacccaggt tcaacggtca actcgaagat tggatcagtt tcaaaagcca       900
     gttcaatgcc cttgtgaagc gtcgtgaagg tctttcagaa agcgaaaaat tgttctacct       960
     caaagccgct attcaagatg gtgctgcgcg ccatgttcaa tcgtccgaag attcctttgc      1020
     gnccctttgg aaggctcttt gttcggaatt cgagaacaaa aggatcttgg tggacaaaca      1080
     cattgcncag ttgttccatg tgaagcccat ttcccgcgaa tctggctcag ccctgcgtag      1140
     cctgctcaat gacgtcacnc gcaatattcg agctttagcc aaccncgaat tgaaactaga      1200
     gccactttcg gaacaatttt tgatccattt agtctgtacg cgtctcgatc cccgcacacg      1260
     aaaggatttc gagcttcagt tgaccgataa tgccctgcca tcttggggaa aattgttggg      1320
     ttttctgcag tctcgctgtc gctgtttgga gaatatcgaa caagacggaa aagaaacggt      1380
     gcccaatcaa ccttcgcgcc ctcggcctga gcgttctgga tcccacgtag tgcgaacttt      1440
     tcctgaaaaa tcaaactctc aaaaaccaac tttcactaac gtcacctgct ttgtctgcaa      1500
     gggtacacat tttttgaatc gatgcgaccn atttttgaat ctgtctccat acgatcgttt      1560
     tgccaaaatc aagagcatag gtctctgctt gaactgtttc agcaataagc actacgtgca      1620
     tgagtgcaag ggcagctcgt gtcgtaaatg tggccgtcga caccacacat tacttcacga      1680
     atccgattca aactcgttga ccacagtaaa tgatttgcgc cnaccatcng agccaacaca      1740
     gagatctact gccccgatca catcgtcgat caactcttcg atcggctctg tctcttcgtc      1800
     gactacgcga tcacgtcaat atgttctcta cacagcagtc gggctgatag gagatgctca      1860
     tggaaactcc atcgaatgcc gaattctgct tgactgtggg tcgatgcacg acctgatcgc      1920
     agcacgactt gtcaatgtgt tgaagctacc gaaatctaan gcgaatgtta atattctcgg      1980
     ggtcacaggg tcagcacaat tgatcagaga caaggtcaga gcaacgattc gccccacctt      2040
     aactgattcc tcgttcaatt tggaattttt ggtcatgaaa aaggtcacaa ctgatctacc      2100
     aatgaaatcg tttcagatag ataccgatcg gattccagca gatgtggcac tagcagatcc      2160
     ttcgttcaat cgatcgcgac gaatcgatat gctgctggga attcaagtgt tcaatgaacn      2220
     gttccactgg tcaatcgttc tcgttgacag acgatcaaac gttctggtgc aagaagacca      2280
     tttttggatg ggtagttggt ggtgcagtaa gcgagcagga agcagagcaa ccttcctcga      2340
     acatttgtgc agtcgtgacc aatgaagcat tangcgagca gatgagcaag ttctgggaaa      2400
     cagaagccat ccccgaacca cgaaagatga ccgaagatga acaagctgca gaacgaagct      2460
     tccaagagac atgtcggagg ctcccagatg gacgatacga agttgggctg ccactcagga      2520
     agagcatcga tgagttgggc gaaagcgaga cgatggcact gcgcagattc gttcaagttg      2580
     agcggagatt gatacacaac ccgaatgtat acgaacagta tcgagcattt atggcagatt      2640
     accatgatca agggcatatg gtcaagacga atcagaagat cgacggtgcg tatttcatgc      2700
     cccatcacgc ggtgttcaac ccggcgagca ccacaacgaa gacgagggtc gtttttgatg      2760
     cgtcagccac gaccacgaca ggaacatcac tgaacgatca cctctttgtc ggtcccgtag      2820
     tncagcgaaa gttggcagat accgtactga gattcagaat tccaaaaatt gcgttcactg      2880
     ctgacattac ccagatgttt cggcagatcg tcgtacggcc acaagatcgc aaatggcaac      2940
     agattttttg gcgttctcat ccagacgatt ttttggaagt gtaccagttg gcaacagtca      3000
     cctacggcac ggcatgtgca ccatttctgg cgacgcgtgt actgaagcaa ctatgtgaag      3060
     acgagatcga gcgtttcccc ttggcatcga aggcgggaac tgaggactac tatatggacg      3120
     atcttttgag cggagcggac acaatagaag aagcagtggc gatgcaagca gaattcgtcg      3180
     aaatgatggc gtccggagga tttgtgttgc acaaatgggc ctccaatcac ccggcgttgt      3240
     tgcaatccgt tcccaattcc gacaacgaac aaatcgcatt cttcgaggat gagaaaacca      3300
     ctcgagcttt agggttgacc tggcaaccca aaaacgacgt ttttctgaca aagcttcacg      3360
     agatccaatt ccaaaccggc cagcctacaa aacgatctgt gtattcggac atcgcaaaat      3420
     tgtacgaccc tctaggcttg ctgggtccgt tgatatttgc tgcaaaagtg aaactgcaaa      3480
     aactgtggca tctggaatta gactgggatg aaaccttgag caccgacgaa gccgaatctt      3540
     gggaatgttt tcgcaaccaa atcatccaaa tgggcgaaat ctcaattccc cgctgtgttc      3600
     taccgtacaa atcaccaacg caaattgaac tacatggctt ttgcgatgcg tccgacctgg      3660
     gctacggcgc atgtgcttat attcgatcgg tggattggac tgaagattgt tcgatacttt      3720
     tgctcacttc taagtctcga atcgcacccc tnaagaacgc aaaactgact accgcacgtc      3780
     tagaactatg cggtgcgctt gtacttgcac gattgatttc taacataacg caaaacctga      3840
     gccttacctt ttccagaatc accctctggt ccgattccac gaccgcttta gcttggataa      3900
     ggaccgaccc aagcagactg aaaaccttcg tctccaaccg tgttatcgac atccaaaatc      3960
     tgactcctaa tatggaatgg aggtacgtca acacccacga caaccctgct gatgtcctct      4020
     cccgaggtct agtaccaagt gagatcaaag actgcgaaca atggtggaca ggaccaccgt      4080
     ttctacgcaa aaacgagacc ttttggccgt gccgacccca aaacacaccc gcagagcagc      4140
     tcccggaaac gaaaaacatt gcactaagcc tcacagtcac tgacccccct gtaccgttcc      4200
     ggctgttcga gaccgaaagc gagttccgga aaatgcaacg aaaaatggca tgggtgctac      4260
     gattcatcga ccacgttcgt aagggaaaca agcgagagca tcgacatgga gagctgaccg      4320
     ttcctgaact ccaacaagca acagtggcgc tgaccagcat tgcgcagaga gaggccttcc      4380
     cagatgacat caaacgccta caatctggaa aggtaattca tcctaaaggc aaactaatca      4440
     cctattctgt gttcttagaa gagtctcagt tcaacgttct ccgagtcggt ggaagaatcc      4500
     gccatgcaac tctccccgtg ggtcagaaac atcccatggt ccttccgtct ggtcatccgt      4560
     tcacgctggc tttgatcaga gcataccacg tcgagatgct gcacgcccct cagcaaatgc      4620
     tgcttgcaac actacgacga caattttggg ttcttcacgg tcgcagcacg gtccgacaag      4680
     tcatccgaaa gtgcgtcacg tgcttcagag cgaaaccaat ttcgatgcag cagaaaatgg      4740
     gagatctacc gaaatctcgt ttggaaggag tctatccttt tctcaacact ggtgtggact      4800
     tttgtgggcc aatttacatc cgtcagcaca acaagcgatc aaccgtcacc tacaaggcat      4860
     acgtagcggt atttgtgtgt ttcgctaccc gcgccataca cctagagctg gtaggagatc      4920
     tgaccgcaga cgctttcatc tcggccctac atcgttttgt atcccgaaga ggtaaatgtg      4980
     ccaaaatgtt ttcggataac ggtcttaatt tcgtcggcag taaaaacaag ctcaaggaga      5040
     tgtacgacat gttccgatct cagcaactga agggcaaact agatgacttc tgcaccaaat      5100
     cagcgatcga atggcaccta attcccccnt ccgccccaca ctttggagga ttgtgggagg      5160
     ccggtgtgcg ttctgccaaa tatcacttga aacgaatcac tggaacagcc aacatgaact      5220
     tcgaggagta cactaccgtg ctcacccgcn tagaagccct gctgaattct cgaccgatta      5280
     ccgcattagc agaagaccca agtgacatca gcccgctaac tcctggccac tttctggtgg      5340
     gacgtccgtt gaccgacntc gccgaacctg acntgaccga ccgcaaggag actacactat      5400
     cacgctggca acgtcaatca cagatggtgc aacatttctg ggctcgttgg tcgaatgatt      5460
     acatcncaac actgcagaac cggaataaat ggcacaaccc tttcccagtg aagcctggac      5520
     agtnggtgat catccgagaa gacaatcagc cnccgatgag ctggaagcta gggcggatcg      5580
     agctagtatn ccctggtccc gatggattga tacgagtggc cgatgtacga tcaaacggca      5640
     agctggttcg gaggccgatt gcgaagctgt gtctactgcc ggtcgacgac aacgatgcgc      5700
     agcctgncga tgaccttcac gcagatgcag acgatggcga atgacgagat tgaaatctgt      5760
     taatttcaat gggggcagca tgt                                              5783
//
ID   BEL-273_AA-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-273_AA_;
KW   BEL-273_AA-I; BEL-273_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-338
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2555-2555 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 338 BP; 89 A; 80 C; 69 G; 100 T; 0 other;
     tgagtgtagt attaccggcc aaatcaatac aaccctagat aggtaggatt cgatgttttt        60
     ttgtagagtc tctccagtat cattcgtcct tatcactctg agtttcaatg tattgtaccc       120
     caataacgac gttactcgaa cccgaagata cgatcgacta gacttagcta aggaaaacga       180
     ataaataata aatcaattgg ctcttgacca ccgcacgtta ctgtcgtatt attaagttcc       240
     gcgcgcttca tttcagtgaa gtccgagtgt cccgagttcc tccgttttcc gtggccacag       300
     tctacgccgc gtgtgcagct attgcgaagt gttgaaca                               338
//
ID   BEL-274_AA-I repbase;    DNA;    INV; 6305 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-274_AA_;
KW   BEL-274_AA-LTR; BEL-274_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6305
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2556-2556 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5349-5909] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1011..2882,2886..6305)
FT                 /product="BEL-274_AA-I_1p"
FT                 /translation="MNGQQASNNSKQPQEHQIPNLAQNNNRLSIHADHFDR
FT                 ALRHTQPQFPSLRENQPSNFPSGHPATIVDGDQFVPGQRSTPVYRQSLHMP
FT                 PATTMNNETVCILNRSQLAARQAVPKDLPEFSGNPEDWPLFYSVLNSSTQM
FT                 CGFSNEENILRLRKCLKGKALEAVRCRLLHPSNVAGVLMTLKMLYGRPEAI
FT                 IQAIIRKVRSLPPPDMEKLETVVSFALTVENLVATIQACEVSDFVYNASLR
FT                 YELVERLPSSLKMDWARFSRGKPNPTLIDFSAWLYATAEDASAVMISSGNN
FT                 DQRTRQSKKDGYLNYHSESESTATRSNEAPARLKTSGTVTKEQCVVCKGVC
FT                 SSVAKCQRFEEFSYDSKWATVKECRLCRKCLRKHNGSCKQAKQCGINGCEF
FT                 LHHPLLHNAQKHGASKSAPPATASNTPPETRRTDRSCNIHQVQSEVLFRIV
FT                 PVMLYGPTKTIRTYAFVDDGSELTLIEQSLSDELGAEGPKKPLCLKWTGDT
FT                 QKVEQGSQQINLQISGVNNPKKYELSNISTISSLKIRPQTLLVEEIQERYP
FT                 YLEGLPLESYRNVSPRILIGVDHATLGHTITSREGKDNEPIAVQTRLGWMV
FT                 FGNCTGKEKEERYVNYHSVQTCECNRPGEDLHKLVKSYFSLDSLGVSKPDK
FT                 LLVSQQDQRAQMLLETLTRRTDGRYESGLLWKYDGVRLPDSEAMARKRWRC
FT                 LDNRMRKDPGLSEALKAKMSEHISKGYIRKLSAEELKKSQPRVWYLPIFPV
FT                 VNPNKPGKIRIVWDAAATVHGVSLNTFLLKGPDQLTSLVSVLVQFREFRVA
FT                 VSGDIREMFHQIKMREEDQHCLRFFWKDDDNTTEPSVYVVQVMTFGACCSP
FT                 STAQYVKNCNAKRFERDHPEAVNTIVKRHYVDDMLVSVESEEEAIQLVQNV
FT                 KAIHASGGFEIRNWISNSRNVVAAVNENASQEKNLDIGEEGVAEKVLGMWW
FT                 DTTKDCFTYKISARYDKELISGNRRPTKREVLRTLMMVFDPLGFIAHVLMV
FT                 LKVLLQEIWRTPVGWDDPIENPQYEKWLSWLEIFPRIATVEIPRCYRLLTP
FT                 LDEETRIQMHTFVDASESGFAAAVYLRFERNDVVECMLVGAKTRVSPLKFL
FT                 SIPRSELQAAVIGTRLADTISKALSINVTQRTFWTDSKDVLCWLRSDHRRY
FT                 SQFVAFRISEILETTDVNQWRWVPTKHNVADEGTKWKRVPNLDSNCRWFRG
FT                 PDFLLLKDDNWPANPFPDKSTQEELRPHLLHHTQSSEQVISPQKFSKWTVL
FT                 LRVTAYVLRYVSNLKRSCYGKPRMSGPLTKQDFIDAETYLFRLAQSTAFPE
FT                 EISILMKNRSCPKSAKLLPRSSLLYQWCAFLDENNVLRVKGRTKACAFIDR
FT                 DAAEPIILPRNDSVTSLVIASIHERFNHQNHETVVNAILQRYRIPRLKAAY
FT                 RHFRKDCQQCKIMLANPKPPAMADLPIARLAAFTRPFTHMGVDYFGPILVS
FT                 VGRRTEKRWGVLATCLTTRAIHLQIAHTLTTDSCIMAIRNIMARKGIPAMI
FT                 YSDRGTNFRAASKELQSATEKLDQNVLKKEFTSSHTEWSFNPPLSPHMGGV
FT                 WERLIRSVKQNLERLQTSRLPTDEVLQNALIEIENIINSRPLTNIPIDDDD
FT                 SPVLTPNHFLLGSANGLRSWVPLDDNPILLRNSWKQSQMLADTFWRHWVRN
FT                 YLPTITRKTKWLTPVKPIEIGDVVVIVDPKLPRNCWPKGRVIATCPASDGQ
FT                 VRWATVQTASGGIYERPAVSLAVLDVGVEKNPLQNESSRIPGGE"
XX
SQ   Sequence 6305 BP; 1833 A; 1508 C; 1536 G; 1426 T; 2 other;
     ctaaagaatt attatatact tttgcaccgg ataaataaag ttcatggaat tccgattcaa        60
     actcgttgtg atccaagaat tttataactt ttgcaccgga taaataaagt tcgggaataa       120
     agttcatgga atttcgattc aaactcgttg tgatcaacat tttataaaat tctttataaa       180
     tcgatctcga gatgtcgaaa aagtctacca actctggacg cgaatacagc gaagagcgca       240
     gcttcacggg tgcagccgaa ggtaataccg ttgcaaatgc ggcggcgact acgggcggat       300
     tgttaggcga agcctccatg cctagtgcaa ttcaggtaaa ttcgaagcaa ggtaatgttc       360
     cattggttac cgttccccga aataccggga ccaaaccaaa acagcagcag ctagatatcg       420
     ttcccaaaaa gtcaaagtca atcccagtca cgtccgacac gaaacggaat ccggtacgcg       480
     aagttcgaag gaaacatgat ttccactgtc agttgtgtag tgagcgtgac aacgatcgaa       540
     tggtgcaatg cgatggcagt gattgtaagc agtggttcca ctacgattgt gtggaagtaa       600
     cgaatggtgt ggcacacgta acctggatct gtcctatttg cagcgccgca aaggatccaa       660
     ccccagcgat tatgaacccc cccaccggta ccaccaccga ccagaacatg cagctgaacg       720
     agcaaatgag gtcgtcaaaa aagagcagtc atacagaacg gtcgttcagt aaaggaagtt       780
     cagtaaggag cgaaacaaga aggatgaggg agctggagct gcagaagcta aatgaagagc       840
     tagagctgga gaaaaagttt ctggagaaac gatacacgat cctaaaggac tacggtagcg       900
     attcgtcatc agtagcaagc gagatggaga atatgtcgaa gattcaagag tgggtagcac       960
     aaactgagcg ccatggcgaa ncgagcgatt ccggtttagt agaagaggag atgaatgggc      1020
     agcaagcatc gaacaactcg aagcagccac aggagcacca aattccaaat ctcgctcaaa      1080
     acaacaaccg actatcgatt cacgcagatc atttcgatcg tgctttgcgg catactcaac      1140
     cacagttccc gagtctcagg gagaatcaac cgtctaactt tccctcgggg cacccagcta      1200
     caatcgtgga tggcgaccaa tttgttccag gacagcgttc aacaccggtg tacagacaat      1260
     ctcttcatat gccacccgca acgactatga acaacgagac agtgtgtatc cttaatagga      1320
     gtcaacttgc cgcacgtcaa gcagtcccca aagacttgcc ggaatttagt gggaatccgg      1380
     aggactggcc actcttctat tctgtactca actcctcaac ccaaatgtgt gggttctcga      1440
     atgaagagaa cattttacga ttacgcaagt gtttgaaggg aaaggcactg gaggcggtga      1500
     gatgtcgtct acttcatccc tcaaacgtag ctggagtatt gatgacgcta aaaatgctct      1560
     acggaagacc agaagctatc atccaggcaa ttatccgaaa agttcgttca ctaccaccac      1620
     cagacatgga aaaactggag actgtagtga gttttgcact aacagtagag aatcttgtcg      1680
     caacgatcca ggcctgtgaa gtcagcgatt tcgtatacaa cgcttcactc cggtatgaac      1740
     tagtggaaag gcttccatcc tctctcaaaa tggactgggc cagattctcc cgtggaaaac      1800
     caaatccaac gctcattgat ttcagtgcgt ggttgtatgc tacggcggag gatgcaagcg      1860
     ccgttatgat cagtagcggt aacaatgatc aaagaacccg gcagagcaaa aaggacgggt      1920
     acttaaacta ccactctgag tcagagtcga cagccacaag atctaacgaa gcgcctgcca      1980
     gactgaaaac ttccggcacc gtcacgaaag agcaatgtgt tgtgtgtaaa ggagtttgtt      2040
     cttctgtcgc taaatgccag agattcgagg agttcagtta tgactccaag tgggcgacgg      2100
     tgaaggagtg tagactgtgc cgaaaatgtc ttcggaaaca taatggatcg tgcaagcagg      2160
     ctaagcagtg tggaatcaac ggatgtgagt ttcttcatca ccctctcctt cataatgcac      2220
     aaaagcatgg tgcatcgaaa tcagcaccac cggctactgc tagcaacaca ccgccagaga      2280
     cgagaagaac ggatcgtagc tgtaatattc accaagtcca atcagaagtt ctgttcagga      2340
     tcgtcccggt tatgctatac ggaccaacaa agacgatacg cacatacgcg tttgtcgatg      2400
     atggatctga gctcactttg attgagcaga gcctgtccga cgagttggga gcggaaggac      2460
     cgaaaaaacc attgtgcttg aagtggaccg gcgatacgca gaaagtggag caaggttcac      2520
     aacagatcaa tctacagata tccggcgtga ataacccgaa gaagtacgag ctatcgaaca      2580
     tttccacaat atcttctctg aaaattcgcc cacaaactct actggtagag gaaatccagg      2640
     aaaggtaccc ttacctggaa ggacttccgc ttgagtccta tcgcaacgtc agccctcgga      2700
     ttctcatcgg agtagatcac gctacacttg gtcacaccat cacaagccgt gaaggcaagg      2760
     acaatgaacc cattgccgtt cagacacgat taggctggat ggtcttcgga aattgcactg      2820
     ggaaggagaa agaggaacgg tatgtaaact accacagtgt ccaaacctgc gaatgcaatc      2880
     gagntcctgg cgaagatcta cacaaactag tgaaatctta tttctcgcta gatagcctcg      2940
     gagtatcaaa accggacaaa ttgttggtat cgcaacaaga ccaacgagca caaatgcttc      3000
     tcgaaactct aactcgccgt acagatgggc gatacgaatc cggccttctt tggaagtacg      3060
     acggtgttcg acttccggac agtgaagcta tggcacggaa gcgttggaga tgtttggata      3120
     accgtatgag gaaagatccc ggattatctg aggcgcttaa agcaaaaatg agtgaacata      3180
     tcagcaaggg ctacataaga aagttgtcag cggaggagct taaaaaatca caacctcgcg      3240
     tgtggtatct cccaattttc ccggtggtca acccaaacaa accgggcaag ataagaatcg      3300
     tgtgggatgc cgcagccaca gtccacggag tgtctctgaa cacctttctt ctgaaaggcc      3360
     ctgaccagtt aacgtctctc gtttccgttt tagtacagtt tcgagagttt cgggtggcag      3420
     taagtggtga catccgtgaa atgtttcacc aaataaaaat gcgtgaagaa gaccagcatt      3480
     gcttacgttt cttctggaag gacgacgata acactacgga accgagcgtt tatgtagtac      3540
     aggtgatgac gttcggagcc tgctgctcgc cgagtaccgc tcaatacgta aagaactgta      3600
     acgctaaacg gtttgaacgg gatcatcctg aggccgtaaa tacaattgtt aaacggcatt      3660
     atgtagatga tatgctcgtc agcgtagagt ccgaggagga agcaattcag cttgttcaga      3720
     atgtcaaggc gatacacgcc tctggtggtt tcgaaattcg aaactggata tcgaactctc      3780
     gaaatgtggt ggctgcggta aatgaaaatg cttcacaaga gaaaaatctc gacattggcg      3840
     aagaaggcgt cgctgaaaag gtcctcggca tgtggtggga tactacgaag gactgtttca      3900
     cctataagat ctccgcacgc tacgacaagg aacttatctc aggaaaccgt cggccaacaa      3960
     agagggaggt cctacgcacg cttatgatgg tattcgatcc gttaggattc atcgcacatg      4020
     ttttaatggt cttaaaagtg cttctacagg agatatggcg aacaccagtc gggtgggacg      4080
     atccaatcga gaatccgcag tatgaaaagt ggctgtcctg gctagaaatc ttcccgcgga      4140
     tagcaacagt tgaaataccg cgctgttatc gtctactaac accattagat gaggaaacca      4200
     gaattcaaat gcatacgttc gtcgatgcaa gcgaaagtgg atttgctgca gcggtatacc      4260
     tacgattcga aaggaacgat gtcgtcgaat gtatgctagt tggtgccaaa accagagtct      4320
     cccctctcaa atttctatcg attcctcgct ccgagttgca agcggcagtc attggtacgc      4380
     gtctcgccga taccatatca aaggcactct caatcaacgt tactcaaaga acgttttgga      4440
     cggattccaa agacgtatta tgctggctcc gttcggatca caggcgttac agccaattcg      4500
     ttgcattccg catcagtgaa atccttgaaa caacagatgt taatcagtgg cgctgggtac      4560
     caacaaaaca taatgttgct gatgaaggaa cgaaatggaa gcgggtccct aacttggaca      4620
     gtaactgccg atggttccgt gggccagact ttcttctcct gaaggacgac aactggccag      4680
     cgaatccgtt tccagacaag agcacacagg aggagctccg accacatctg cttcaccata      4740
     cgcaatccag tgagcaggtt atatcaccac agaagttttc aaaatggacc gtcctcctgc      4800
     gtgtaacggc ttacgtacta cgctatgtta gcaacctaaa gcgtagctgc tacgggaaac      4860
     ctcgaatgtc cggaccgttg acgaagcagg attttatcga tgcagaaacc tatctgtttc      4920
     gtcttgcgca gtcgaccgct ttcccagagg aaatctccat tctcatgaag aaccgttcat      4980
     gtccaaaatc agcaaaactg ctccctagat ccagtctact ttaccaatgg tgtgcgttcc      5040
     tagacgagaa caacgtcctt cgtgtcaagg gccgaacaaa agcgtgtgcg tttatcgata      5100
     gagatgctgc tgaacccatt atcctgcccc ggaatgattc ggtaacctct cttgtcatag      5160
     cttctatcca cgagcggttt aaccatcaga atcacgaaac ggtggttaat gcgatacttc      5220
     aacgttaccg tatccctcgc ttgaaagcag cataccgaca cttcaggaaa gattgtcaac      5280
     agtgcaaaat tatgctcgct aacccgaagc ctcctgcaat ggctgatctc cctatagctc      5340
     gactagcggc cttcactcgt cccttcactc acatgggagt ggactacttc ggtccgatac      5400
     ttgtctcggt tggaagacgt actgaaaaaa ggtggggggt acttgccact tgcctaacca      5460
     ctcgcgccat acacctacag atcgctcaca cactgaccac tgactcctgc ataatggcca      5520
     tccggaacat catggccagg aaaggtattc ctgctatgat ctacagcgac cgcggaacta      5580
     attttcgcgc tgcaagcaag gagttacaaa gtgcgacgga aaaacttgat cagaacgtat      5640
     tgaaaaagga gttcacgtca agccacactg agtggtcttt caatcctccc ctttcacctc      5700
     acatgggcgg cgtgtgggag aggttgattc gaagtgtcaa gcagaacctc gaacgattgc      5760
     agacgagcag gctgccgacc gacgaagtcc tgcaaaacgc attgatagag atcgagaaca      5820
     taataaactc tcgtcctctg accaacattc caatcgatga cgatgactca ccagtattga      5880
     ctcctaacca cttcctgtta ggatcagcca atggtctgcg atcatgggtc cccttggacg      5940
     acaaccctat tctactgagg aacagctgga agcagtcaca aatgttagca gacaccttct      6000
     ggaggcactg ggtccggaac tacttgccta cgatcactcg taagacgaag tggttaactc      6060
     cagtaaaacc gatcgaaatt ggggatgtag tagtcatcgt agatccgaag cttcctcgta      6120
     attgctggcc gaaaggccga gtgattgcta cgtgtccggc atcggacggt caggtgagat      6180
     gggctaccgt gcagactgca tcaggaggta tctacgaacg accagcggta tctctagctg      6240
     tactggacgt aggcgttgaa aagaatccgc tccagaacga atcttcgcgt attccggggg      6300
     gggag                                                                  6305
//
ID   BEL-274_AA-LTR repbase;    DNA;    INV; 654 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-274_AA_;
KW   BEL-274_AA-I; BEL-274_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-654
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2557-2557 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 654 BP; 237 A; 129 C; 121 G; 167 T; 0 other;
     tgttggttac gccccgtcga aaaatggtct acctgagcta accgccagtc tagagtgaca        60
     aaaccacacc catccctgtg caagggtttg tccaggtata ggagacggac gaaggtcaga       120
     cacgatattg acagctaata taattaagga acaattgaat tgatcagcct tgagttatag       180
     agagtacatt tgtgaattcg cttcttaaac ctaataattt acatgcaaat caacctattc       240
     ctaaatacat aaatactata taaacaggtg agaacttaag gctaaatgaa ttaatgaaaa       300
     atcaatgaac taacgtgtgc ttacataact aggaattcgg attgaacata cgtgccaatt       360
     gccttctgct tagtgatcct tggctagtaa acgggtgaga actaagttaa ctgaaatgct       420
     aaagcattac cctaaacata catatgtaca cgggttctaa cttacaacta gatgctataa       480
     gcaaattgct tagaaaccac aggacacagc ataaatacca cagtgctacc gttgataggt       540
     gagactttac accaacatga aaattaaggt tatactaaaa aaattactct ataggctgta       600
     taaccctacg cactgtatcc atcagcaaat ggtagaggac agacagcaga atca             654
//
ID   BEL-275_AA-I repbase;    DNA;    INV; 5973 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-275_AA_;
KW   BEL-275_AA-LTR; BEL-275_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5973
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2558-2558 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5037-5594] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..5744
FT                 /product="BEL-275_AA-I_1p"
FT                 /translation="MSKEASKPATNVTVCVGCAAGCNQSDSVEDMVQCDTC
FT                 ESWWHYTCANVDETVKDRSWSCVKCPPRRSVLRSGKSSKSRASATSSSSVR
FT                 RAQLQLELERIEKEKQLVDRLHQEREEEEEKARAEEAARREKRFAEKKARE
FT                 EELLQKRFALLQTMVALDDDRSEDRSEGSRSSVRSSKSKVENWMDRHMQGK
FT                 GSGLGKTVGQSEVPPGNATYSNNQTAKIERMNTVPNTRSLNVNVSRQEASG
FT                 EVRNRSVKQQMSGNLAMIPYPMRSHLDFARGLTDYYDNSSDVGEADATARP
FT                 NVEGRFDCREGHSMNRPIVDPRAAITPLGNNPLNSTPLSRTLTTGPSAQQL
FT                 AARHVVPKDLPIFSGDPADWPLFISAYNNSTDLCGFSDGENLMRLQRCLKG
FT                 DALDAVRSYLLLPAAVPFVISTLTTLYGRPELIVNNLLSKVRALPPPKADK
FT                 LETLVSYGLSVQNLCAHLRASGLDHHLNNPSVLQELVEKLPASIKLDWALY
FT                 KRYLPEVDLGRFGDYMASMVAAASDVIVPVAHEPSKVDRPKYKSFVNAHVE
FT                 DEHPENSSIKCAQNVSSTNPKIEMDGMRCLMCEKPGHKVKDCGEWKRRSLA
FT                 ERWDIAERHNLCKRCLIPHGRWPCKVKQDCGVGECRDRHHSLLHPGKPDAP
FT                 GPSSFIPSGMVGTHGHEQGGVLFKIVPVVLHGERTSIQTFAFLDSGSSLTM
FT                 VDEELAEQIGVSGETKRLYLKWTSNVSREESKSQRVTMEVSGIDGMNRYKI
FT                 SNVCTVARLELPAQTLDYAQMVAKFPYLEGLPVQSYVNAVPRILIGLEHTH
FT                 LKVTLRKREGRVGEPVAAKTRLGWAVFGRYGGGIDVQTCLHIREEKSKQDL
FT                 HDFVQAFFEVESLGVDVKNTLVSEDNQRAVQILRETTVRTQAGNYETGLLW
FT                 KTDVVEFPDSYGMAVRRLKSLERRLRTIPELRSNVEHQIQHYLEQGYAHKV
FT                 SEEELRALDPKRSWFLPLGVVLNPKKPGKVRLIWDAAAEVKGVSFNSVLLK
FT                 GPDLLTSLPAVLCRFRQRQIAVTGDIKEMFHQIQIRRADRSAQLFLFRGTG
FT                 EHIGVYMMDVATFGSTCSPCAAQYVKNLNAKEFEKEFPEAAAAIIENHYVD
FT                 DYLDSRDTEDEAAKIALDVKKIHAKAGFEIRNWMSNSKTVLERVGERSSED
FT                 VKSFAMDKSGIAERVLGLVWLPWTDVFTFNMEFRDDLKPLIFDGVIPTKRQ
FT                 VLQVVMSLYDPLGMISTFLIHGKIFIQSLWRAGIDWDECIPESLLEEWNKW
FT                 IGLIAGLQEIMIPRCYFTGYSPESLDTLELHVFVDGSENAYCCVAYFRIID
FT                 RGQPRCALVASKTKVAPLKFLSIPRMELQAALIGVRLAKSIEENHTLRVTR
FT                 RYFWTDSCTVLAWLRSDSRRYRQFVAYRVGEILAKSQVSEWNYVQSGLNVA
FT                 DDGTKWKIGISFNPNNRWYAGPEFLHKAQICWPKKDGTLVPTNEELRQPVL
FT                 HHIEASSPWIQVDRFSRWERLHRSTSYVYRFMNRRKSSNVEDVMLTKEELQ
FT                 QAERSLWRLAQSEMYSEELRILQSNKRSEKGCKKVIDRCSPLAKLSPFVDD
FT                 YGVIRMETRSLNAAYAPCSVVILPRHHRVTYLIADWYHREYGHAYKETVVN
FT                 EMRQVFHVSRLRTLVRQVSERCQRCIIRKTKPQIPRMGPLPEVRLTPYVRP
FT                 FTYTGVDYCGPFLVKVGRSLVKRWIALFTCMTVRAIHLEIAYSLSADSFKM
FT                 VIRRFIARRGAPLEIFSDNGTNFRGASNELKEEIKMINQNLAATFTNTTTK
FT                 WRFNPPLAPHMGGCWERLVRSVKTALAGLEMVRNPDDETLWTLMVEAEAMV
FT                 NSRPLTYVPLDTVDQEALTPNHFMMLSSSGVCQPPKELVDDRTQMRSNWRW
FT                 IQHLLSQFWTRWIKEYLPTITRRTKVV"
XX
SQ   Sequence 5973 BP; 1725 A; 1181 C; 1604 G; 1462 T; 1 other;
     aactcaaaaa attcttgcgg atctgttgtg gaagttccag caacatgagc aaggaagcgt        60
     cgaaacctgc aacgaacgtc acggtatgtg tagggtgcgc ggccgggtgc aaccagtcgg       120
     attcggtaga agatatggtg caatgcgaca cttgcgagtc gtggtggcac tatacgtgtg       180
     ccaatgtcga tgaaacggtg aaagacagaa gctggagttg tgtaaagtgc cctcctagga       240
     gatcngtatt gcgatctggt aagtcatcca agtcgagagc ttccgcgact tcctcatcga       300
     gtgtacggag agcgcagctg cagctagaat tagagcgcat agagaaggaa aaacagcttg       360
     tcgacagatt gcaccaagaa agggaagaag aagaagaaaa agctagggcc gaggaagccg       420
     cccgtagaga gaaacgtttt gcggagaaaa aagctaggga agaagagttg ttacagaagc       480
     gattcgcatt actgcaaacc atggtagcac ttgacgatga taggagtgag gatagaagtg       540
     aaggtagtcg gagtagcgtc cgttcaagta aaagtaaagt tgaaaattgg atggatcggc       600
     atatgcaggg gaaaggctct gggttaggta aaactgttgg ccaatcagag gttccgccgg       660
     gcaacgcgac gtattctaat aatcaaaccg ctaagattga acgtatgaac acggttccga       720
     atactcgatc actcaatgtc aatgtctcgc gtcaagaagc gtctggtgaa gtgcgaaata       780
     gaagtgtgaa acagcaaatg agtggtaact tggcgatgat tccgtatccc atgagatcgc       840
     atttggattt cgcgagggga ttgacagact actacgataa ctcttctgac gttggggaag       900
     ccgatgctac agctcgaccg aatgtagagg gacgatttga ttgtcgagaa ggtcactcca       960
     tgaatcgccc catcgtggat ccaagagctg caattactcc actgggaaat aatccgttga      1020
     acagcacacc attatcccga acgttgacaa cggggccatc ggctcaacag ctagcggcta      1080
     ggcatgtggt accgaaagat ttacctatat tttcgggaga tcctgccgat tggccactct      1140
     ttatcagtgc atacaataat tccacggatt tgtgtggatt tagcgatggt gaaaacttga      1200
     tgcgtctaca gcgttgcttg aaaggagatg cgttggatgc tgtgaggagt tatttattgc      1260
     tgccggcagc cgttccattt gtaatatcaa ccttgacgac cttatatgga cggcctgagt      1320
     taatagtgaa taatctcctt tccaaagtgc gagcacttcc accaccgaag gccgacaagt      1380
     tggaaacact cgtcagctac ggtttatcag tccaaaactt atgtgcacat ctacgagcct      1440
     caggattgga tcatcatctg aacaatccaa gtgttcttca ggaactagta gaaaagcttc      1500
     ctgcttcaat caagctcgac tgggcgttgt ataagcgcta tttacctgaa gttgatttag      1560
     gacgttttgg ggattatatg gcttccatgg tggcagctgc aagtgacgtc atagtccctg      1620
     tggctcatga accatctaag gtagatcgac caaaatataa aagttttgtc aatgcacatg      1680
     tagaggatga gcatcctgaa aactctagca tcaagtgtgc tcaaaatgtc agtagcacga      1740
     atccgaagat tgagatggat ggaatgcgat gtttaatgtg tgaaaaacca ggacacaagg      1800
     tcaaagattg tggagagtgg aaaaggagat cgttggcaga acgttgggac atcgcagaac      1860
     gacataatct gtgcaagcgc tgtttgattc cccatggaag atggccatgt aaagtcaaac      1920
     aagattgtgg ggttggtgag tgtagagatc gtcaccatag tctactacat cccgggaaac      1980
     ctgatgctcc agggccgtcg tctttcattc cttctggaat ggtaggaaca cacggtcatg      2040
     aacaaggtgg agtattgttc aagatagttc ctgtcgtatt acatggggaa cgaacatcca      2100
     ttcaaacctt tgcgttcctc gatagtggct cctcgctcac gatggttgat gaggaattag      2160
     ctgaacaaat tggagtgagt ggagagacaa aacgcttgta tttgaaatgg acgtcaaatg      2220
     tatccagaga agaatcgaaa tcgcagcgag ttacgatgga ggtttccggt atcgatggaa      2280
     tgaatcggta taaaatttcc aatgtttgca cagttgccag gttggaactt ccagcgcaaa      2340
     cattagatta tgcgcaaatg gttgcgaaat tcccgtacct tgaaggtttg ccagtccaaa      2400
     gctatgtaaa tgctgtcccg agaatcctca ttggactgga acatactcat ttgaaagtta      2460
     cgctacggaa acgagaagga cgagtcggtg aaccagtagc ggccaaaact cgtttgggct      2520
     gggctgtatt tggtcgatat gggggtggaa tcgatgtgca aacttgctta catatacgtg      2580
     aggaaaaaag caaacaagac ctgcacgact tcgtccaagc ctttttcgaa gtagagtcat      2640
     taggagtcga cgtcaaaaac actctagtat ctgaagacaa tcagcgagca gtccagattc      2700
     tacgagaaac cacggtgcga acacaggctg ggaattatga aacgggccta ctgtggaaga      2760
     cagatgtggt ggagtttcct gatagttatg gtatggcagt gcggcgattg aaatctttgg      2820
     aaaggaggct acgcactata cctgagctgc gttcaaacgt ggaacatcaa attcagcact      2880
     atttggagca aggttacgca cataaggtat ccgaagaaga gttgagagca ttggatccga      2940
     aacgttcatg gttcttaccg ttaggagttg tgctgaatcc gaaaaaacct ggcaaggtga      3000
     gactaatttg ggatgcagct gcagaagtga aaggtgtatc gttcaactca gtcctgctca      3060
     aagggcccga cttgttaaca tctctaccag cggttctatg tcgattccgg cagcggcaga      3120
     tagcagtaac cggagatata aaggaaatgt tccaccaaat tcaaatacga cgggcagata      3180
     gatcagcaca actgtttctc ttcagaggaa caggagagca cataggtgtg tacatgatgg      3240
     acgttgctac ctttggttcg acgtgctcac cgtgtgctgc tcagtacgtg aaaaatttaa      3300
     atgcgaagga atttgagaag gagtttccgg aagcagcagc tgccataatc gaaaatcatt      3360
     atgttgatga ttatctggac agtagggaca ctgaagatga ggcagctaag atagcattgg      3420
     acgtaaagaa gatacatgcc aaagccggct ttgaaattcg aaattggatg tcaaattcta      3480
     aaactgttct tgaacgggtc ggggagcgga gctcagagga cgtaaagtca tttgcgatgg      3540
     acaaatctgg tatagcagaa cgtgttttgg gattggtatg gttaccatgg acggatgttt      3600
     tcacgtttaa catggaattt cgagacgact taaaaccgct aatttttgat ggagtaattc      3660
     ctacaaaacg ccaggtactg caagtggtga tgagcctata cgacccgctg gggatgatat      3720
     ctacattcct gattcatggt aaaatcttca ttcagagtct ttggagagcc ggtatagatt      3780
     gggatgagtg catacctgag tcccttctcg aagaatggaa caagtggatc ggtctgattg      3840
     cagggctcca agaaattatg ataccacgct gctatttcac tgggtattcg ccggaaagtt      3900
     tagatacttt ggagctacac gtatttgttg acggaagcga gaacgcctac tgctgtgtag      3960
     catacttccg tatcatcgat cgtggacaac ctcgctgtgc gctggttgct tcaaaaacca      4020
     aggtagcgcc gttgaagttc ttgtcgattc cacggatgga actacaggcg gccctcatcg      4080
     gagttcgcct ggctaagtca attgaggaaa atcatactct gcgcgtaaca cgtcgatatt      4140
     tttggacaga ttcgtgtaca gtactagctt ggcttagatc agattctcgt cgttaccggc      4200
     aatttgtggc gtacagagtg ggagaaatac tggcaaaatc ccaggtcagt gaatggaact      4260
     atgtgcagtc aggattgaat gtggcagatg acggcacgaa atggaagata gggatctcgt      4320
     tcaacccgaa caatcgttgg tacgctggtc ctgaatttct tcacaaagca cagatttgtt      4380
     ggccgaaaaa agatggaacg ctagttccaa caaatgaaga actaaggcag cctgtactgc      4440
     atcacattga agcttcttct ccatggattc aagtcgatcg tttttcgcgt tgggaacggc      4500
     ttcatcgctc cacgtcatac gtctaccggt tcatgaatcg caggaaatca tccaatgtag      4560
     aagatgttat gctgacaaag gaagaactac aacaagccga aagatcattg tggcggttgg      4620
     cgcaatcaga aatgtattct gaggagttgc gtattctaca atcgaataag cgttcggaga      4680
     aaggatgtaa gaaggtcatc gatcgttgca gtccattagc aaaactgtcg ccattcgtag      4740
     atgattatgg agtaattcgg atggaaacaa gatcgttgaa cgccgcatat gcaccgtgta      4800
     gtgtggttat tcttccacgt catcatcgtg taacctactt gatagcggac tggtaccaca      4860
     gagaatacgg acatgcttat aaggaaactg tggtgaacga gatgcgacag gtttttcacg      4920
     tgtcgcgact gcgtacattg gtcaggcagg tatcagaacg gtgtcagcgc tgtattattc      4980
     gcaaaaccaa acctcaaata ccaagaatgg gaccactccc agaagtaaga ttgactccat      5040
     acgtgcgtcc gttcacgtac actggcgtgg actattgcgg tccattcctt gtgaaagtag      5100
     gtcgaagttt ggtaaaacgt tggatcgccc tttttacttg catgaccgta agagcaattc      5160
     atctagaaat cgcttacagc ttgtctgctg actcgtttaa aatggtaatt aggcgtttca      5220
     ttgctcggcg aggtgctcct ttggaaatct ttagcgacaa tggcactaat tttcgtggtg      5280
     caagtaacga gctgaaagag gagataaaga tgatcaacca gaacttggcg gccaccttca      5340
     ccaacaccac cacaaagtgg agatttaatc cgccgttagc tccgcacatg ggaggctgct      5400
     gggaacgact cgtgcgttcc gtcaagacgg cattagcggg attagagatg gtgagaaacc      5460
     cagatgatga gacactatgg acattaatgg ttgaagccga agctatggtg aactctcggc      5520
     ccttaacgta tgttccttta gacactgtgg atcaggaggc gttaacgcct aatcatttca      5580
     tgatgctgag ttcaagtgga gtgtgtcagc cgccgaagga gttagtagat gacagaacgc      5640
     agatgaggag caattggcgg tggatacagc atttgctaag ccagttttgg acacgctgga      5700
     taaaagagta cttgccgacg ataacgagga gaaccaaagt ggtttaacga ggtcaagcca      5760
     gtgaaagatg gtgatatggt gatagtggtt gaagaaggta cgaggaatgg atggatacga      5820
     ggtcggatag tgcgaacgct accaggcaaa gacggaagag tccgacaagc tgatgtgcaa      5880
     acaagtaatg gaatactacg tcggccggtt gcaaagatag cggttttgga ggtaacgaag      5940
     ggtaaagctt aaggagcgtt acgggtcggg gaa                                   5973
//
ID   BEL-275_AA-LTR repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-275_AA_;
KW   BEL-275_AA-I; BEL-275_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-578
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2559-2559 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 578 BP; 188 A; 78 C; 130 G; 182 T; 0 other;
     tgttcgttcc gtgtgttgcc ggatcgatca gttttacaac acggctcctg atctcgataa        60
     ggtagatcgc attgtttggg cgattcgttg tcgtgttcaa atgtgatgat tcattgtgaa       120
     gaagatagtt ggatgtgaaa gttaaattat agttggcgaa atttatcgta ttatttgaag       180
     tcctggaatg cgctagaaga ggaaaattgc tgaaaagata aaaaggtaaa ttagttatat       240
     ggaaaagaaa acgaatactt acctgtatga ctaattgtag acactatctg tgaggcacga       300
     ttaatatcgg tacaccaata atctatcggt gattttcaat agccatgtaa gtaatgtttg       360
     gaatcacact aaattgctta aatttatatt gtataaatta ttcagtaggc tcgaagtagt       420
     aggcagaccg gaatttgggt tcggattggt caaacgaata tcaagaattt gtaggtataa       480
     gatgttgaaa ttgaagatga ggaactaatt aaatctatta cagtttgagc tgtctgcaac       540
     gagattgctg caaaaaccga tttcgtctaa tccgaaca                               578
//
ID   BEL-276_AA-I repbase;    DNA;    INV; 5607 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-276_AA_;
KW   BEL-276_AA-LTR; BEL-276_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5607
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2560-2560 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4660-5220] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..5607
FT                 /product="BEL-276_AA-I_1p"
FT                 /translation="MPPLAPPPERSCSMCQSEDDSQMVCCDKCSDWFHFDC
FT                 VGVTEAIANHPWICPNCVKASTNEPPSVPSVPPPVAPTTSEPSQCLPAFTS
FT                 APLHPSAPSSHSVPPTLSTLPSQHLQLPVELQLKMLEEEREIERKYLQRKY
FT                 QLMMEASGTSNTQPSISHAVHDYSFRQPPCHSSPLRPAQPTAPELHILEGT
FT                 NSPNETVLLNSSQIAARHAVAKELPVYSGEPEEWPLFIATYENTTRLCGYT
FT                 PEENMVRLQRCLRGKALEAVKCQLLHPANLDFALSTLKMLFGRPEIIVHTL
FT                 IEKINRIPAPKADKLNTIVDFALAVRNMVATVKACKLEEHLYNITLLQGLV
FT                 ERLPPMVKLNWATYRVQLPRVSLLEFSDWLYTVAEAASTVTMPTPSVAHDN
FT                 KPRRFKEDGFLHVHSDHQSGSNPLQRSKGGCVVCHGTCNAIENCQEFINLD
FT                 HGDRWAALREHKLCRTCLGTHRGQCRSGDICGKNGCTFKHHRLLHNDRNGN
FT                 SGPTSTYPAQSNQADHVEPAYSQQYNCNTHRWNEKSVLFQYVPVILHHNGH
FT                 TVRTFAFIDCGSHMTLLEESLAAELNLRGEKHPLCIRWTADQCRFEDTAER
FT                 VSLHVSGTQSENQFPLSDVFTVKDLKLPAQSLSVTKMRRRYNYLKGLPVES
FT                 YNDARPRLLIGMNNVRLGHALDSREGKENEPIATKTRLGWTIFGTCLDDHP
FT                 KPSTIPHSFHICSHSYKLDDDLHAAISDYFALESLGITAPKEKLLSVEDER
FT                 ALNILQTNTRLENGRYTTSLLWKYDDIRLPNNKTMALRRHHCLVKRMKREP
FT                 TLGEILRKKIADYVQKGFIRKLSPGEIREGGNRVWYLPIFPVFNRNKPNKV
FT                 RVVWDAAASVAGTSLNSVLLKGPDQLKPLPFILYKFRERPIAICGDIEEMF
FT                 HQVKMCVDDQQSQRFLFQDNLNAAEPDEYVMTVMTFGATCSPSSAQFIINK
FT                 NAERFQKQLPTAAEAIRENHYVDDMLASVNSEAEAIQLAEDVHFIHQQGGF
FT                 KMRGWISNSPTVMRALNSSEIPERNLDLNTEHALEKVLGMWWNIKSDEFQF
FT                 KLSKERHADLLLNAKHPTKRELLSVLMSMYDPLGLIASFLMPLKLLLQEVW
FT                 RSGITWDEPIGDLQLQRWKSWLTYLPLAGSVRIPRCYNLTSTHGDQIDIEL
FT                 HTFVDASETGYCAVSYLRFQLADSIRCVLVGAKTRVAPLKFISIPRLELQA
FT                 AVIGSRLAKNIEEGHSIKIGRRCFWTDAVDVLCWLRSDHRAYSPFVAHRAS
FT                 EILQSTDVSEWKYVPSKENVADEGTKYQRCLRFDSESRWCKGPTFIWNPKA
FT                 TWPKEPLRKNTTSLEMRPSLLHHTAVLVDDCLKPETFSSWRRLLRVTALVQ
FT                 RFAANIQRRLAGKPTSSGPLTREELLTAELTHYKRAQENVYADEMALLKSS
FT                 KFSYGKSKLPKSSPLYKLSPSIDEDGLLRIHGRIDVCDYVDKYTKQPIVLP
FT                 RGHPVTKLVLQDIHERYYHQFYETFVNETRKTYYIPRIRAECKKISSACQR
FT                 CKIRRANPAPPPMGDLPKARLAAFIRPFSYIGVDYFGPYQVAVGRRVEKRW
FT                 GVLVTCLTVRAIHVELVHSLNADSCIMALRSCFARRGVPVQIISDRGTNFI
FT                 ASEKQLKQALAVVDQDKMIKEFTSASTSWVFNPPATPHMGGSWERLIQSVK
FT                 KILAEIHLPHLPRDEVLRSSLIEVENIVNSRPLTHVPIEFESSPALTPNHF
FT                 LVGSSNGLKPLLPFDDSAKALQQAHKTSQTLANIFWKRWVCEYLPTITRRS
FT                 KWFSAVKPIAVGDIVIIVDPKLPRNCWPKGRVLATTVSKDGHVRQATVQTA
FT                 TGIFQRSAVNLAILDVGANTCRPEVRPATGGD"
XX
SQ   Sequence 5607 BP; 1582 A; 1414 C; 1275 G; 1336 T; 0 other;
     atttaaaaac ttcgttttcc agacgactca aggagatact gaacgatgcc accattagct        60
     ccacctcccg aacgcagttg ttcgatgtgc caatccgaag atgacagtca gatggtctgt       120
     tgtgataagt gtagcgactg gtttcacttc gactgcgtcg gagtgacaga ggccattgca       180
     aatcacccat ggatctgtcc gaactgcgtc aaggcctcaa caaacgaacc gccatccgtg       240
     ccaagcgttc cgccgccagt ggctccaacg actagtgagc cttcacaatg ccttcccgcg       300
     ttcacatcag ccccgctaca tccatctgcc ccgtcatctc attccgtgcc accaacccta       360
     tcaacgttgc cttcacagca cctacagtta cctgttgaac tacagttgaa aatgcttgaa       420
     gaagagcggg aaatagaacg gaaatacctt cagcgaaagt accaactgat gatggaagca       480
     tctggcacaa gcaatactca accgtcaatc tcccatgctg tacacgatta tagttttcga       540
     caaccaccat gtcattcgtc gccgctacga ccagctcaac ctacagcacc agagcttcac       600
     atccttgagg gtacaaatag tccaaatgaa actgtgctgc tcaactcgag ccaaattgct       660
     gcgcgtcatg cggttgccaa agagttgcct gtgtatagcg gtgaaccaga ggagtggcca       720
     ctttttattg caacatacga gaatactaca aggctatgtg gatatacacc tgaagaaaat       780
     atggttcgat tgcagcgctg ccttcggggt aaagccctgg aagctgtgaa gtgtcagctt       840
     ctacacccag ccaatctgga tttcgcacta tccactttga aaatgctatt cggtcgaccc       900
     gagattatag tgcacaccct catcgaaaag atcaacagaa tccccgcacc caaggcggac       960
     aagttaaaca cgatcgttga ttttgcatta gccgttcgaa atatggtggc caccgtgaaa      1020
     gcctgcaagc tagaagaaca cttgtataac atcactcttc tccaaggcct agtggagcgg      1080
     ctaccgccga tggtgaagct gaattgggcc acatatcgtg ttcaactgcc cagagtctct      1140
     cttctcgaat ttagcgattg gttatacacc gtggcggaag ccgcgagtac cgtcactatg      1200
     ccgacaccct ctgtcgctca tgacaacaaa cctcgccgct ttaaagaaga tggatttcta      1260
     catgttcact ccgatcatca atcaggctcc aatccgttac aacgatcaaa aggcggctgt      1320
     gtagtttgtc atggaacgtg caatgcaatc gagaattgtc aagagttcat caacctggat      1380
     cacggtgacc gatgggctgc attacgtgag cataagctat gtcgaacatg cctaggaacg      1440
     catcgaggac agtgcaggtc aggcgatata tgtggtaaaa atgggtgcac ctttaaacat      1500
     catcgcctgc ttcacaacga tcgcaacgga aattcaggac ctacttccac ataccctgca      1560
     caatcaaacc aagccgacca tgtagaacca gcctattccc agcagtacaa ttgtaacacc      1620
     cacagatgga atgaaaaatc ggtgttgttc caatacgtac ctgtgatact tcatcacaac      1680
     ggccacacgg tgcgaacatt tgcgttcatt gattgcggct cccacatgac gttgctcgag      1740
     gagagtctgg ctgcagaatt aaacctccgc ggagagaagc atcctctttg tattcgctgg      1800
     accgccgatc aatgtcgttt cgaggacacc gcggagaggg tctcacttca cgtttccggg      1860
     acacaaagtg aaaaccagtt tcctttatcg gatgtgttta ccgttaaaga tttaaaactg      1920
     cctgctcagt ctctctctgt aacaaaaatg cgtcgaagat acaactattt gaaagggtta      1980
     cctgtggagt catataacga cgctcgcccc cgccttctca taggaatgaa taatgttcga      2040
     ttgggtcacg cactagacag tcgtgaaggt aaagaaaacg agccgatagc tacgaagacg      2100
     cgcctgggtt ggacgatatt cggaacctgt ttggacgacc atccgaaacc ctcgacaatc      2160
     ccccatagtt tccatatttg ttcacactca tacaagttgg acgacgactt gcacgctgct      2220
     atttcggatt attttgccct tgaaagcttg ggcatcacgg cacctaagga gaaattgcta      2280
     tcagtagagg acgagcgagc gctgaatatc ttacaaacga atacgcgcct cgaaaacggt      2340
     cgttatacca caagtctact gtggaaatat gacgacatcc gcttacccaa caataagacg      2400
     atggccctta gacgtcacca ctgtctcgta aaaaggatga aacgtgagcc tacacttggc      2460
     gagatcctga gaaaaaagat agccgactat gttcaaaagg ggtttatccg aaagctgtca      2520
     cctggggaga tacgcgaggg tggcaatcgc gtctggtacc tccctatttt cccagtgttc      2580
     aacagaaata aaccgaacaa ggttcgcgtt gtttgggacg ccgctgcctc tgtggcaggc      2640
     acgtccctta actccgtcct gttaaagggg ccagaccaat tgaagccact tccgtttata      2700
     ctctacaagt tccgagaacg tccgatcgct atatgtggcg atatagagga aatgttccac      2760
     caagtaaaaa tgtgcgtgga tgatcagcaa agtcaacgtt tcctgtttca agataatttg      2820
     aacgcagctg aacccgatga atacgtaatg actgtaatga ctttcggtgc cacttgttct      2880
     ccgagcagtg cacagttcat tatcaataaa aacgctgaac gttttcagaa acaattgcca      2940
     acagcagctg aagcgattcg agaaaaccac tatgttgatg acatgctagc cagtgtcaat      3000
     tcggaagcag aagcaataca actagcagaa gatgtacact tcattcatca gcaaggggga      3060
     ttcaaaatga gaggttggat ctcgaattct cctacagtta tgagggcact caatagtagc      3120
     gaaatacctg aaagaaattt ggaccttaat acagaacacg ctttagaaaa agtgttaggt      3180
     atgtggtgga acatcaaatc cgacgaattt cagttcaagc tttccaagga acgtcatgca      3240
     gaccttcttc tcaacgccaa gcaccccaca aaaagggaac ttctcagcgt gcttatgtcc      3300
     atgtacgacc ctctaggctt gattgccagc tttctcatgc cattaaagct actgctgcag      3360
     gaagtgtggc gctcaggaat cacctgggat gaaccaatcg gcgatctaca actgcagaga      3420
     tggaaatcgt ggttgactta ccttccacta gcgggttcag taagaattcc tcggtgttac      3480
     aatctaacat caacccatgg agaccagata gacatcgagc tacatacttt tgtggacgca      3540
     agtgaaactg gctattgtgc agtgtcctac ttacgatttc aactagcgga cagcatcagg      3600
     tgtgtcctgg taggtgccaa aaccagggtg gccccactca aatttatctc catcccgcgc      3660
     ttagaactcc aagcggccgt aatcggatcc cgtttggcta agaatattga agaagggcat      3720
     tcgatcaaaa taggacgccg ctgtttctgg acggacgccg tagatgttct gtgttggctg      3780
     cgctcggatc atcgggctta ctcaccattt gtggcccata gagctagcga aatcctacag      3840
     tcgaccgatg tatccgaatg gaaatacgtg ccgtccaaag aaaatgtagc agatgaagga      3900
     accaagtatc aacgatgtct aagatttgac tcagaaagcc gatggtgcaa agggccaaca      3960
     ttcatttgga atccaaaggc tacctggcct aaagaaccgc tccgtaaaaa tacaacaagc      4020
     ttggaaatgc gaccatcttt gctccatcat acagcagttt tagtagacga ctgtctaaaa      4080
     ccagaaacgt tttccagctg gcgaagatta ctgcgagtta ctgccctagt gcaacgattt      4140
     gcagcgaaca tccaaagaag actggcaggt aaaccaacat catccggtcc tctaacccgt      4200
     gaagaactgc tcaccgcaga gctgactcac tacaaacgtg cccaagaaaa cgtctacgcc      4260
     gacgagatgg ccttactgaa gtcttcaaaa ttttcttacg gtaagtcaaa gcttcctaag      4320
     agcagtcctc tttacaagct tagtccaagc attgacgaag atggattgct gcgcattcac      4380
     ggtcgcatcg acgtttgcga ctatgtcgat aagtatacca agcagccaat tgtgttaccc      4440
     cgagggcatc ctgttacaaa acttgttctg caagacatac acgaacgtta ctatcaccag      4500
     ttctacgaaa cgttcgtgaa cgaaactcgt aaaacatact atatccccag gattcgtgct      4560
     gagtgtaaga aaatttcgtc tgcctgccaa cgttgcaaaa tacgtcgagc aaatccagcc      4620
     ccaccgccaa tgggtgacct tcccaaggcc cgtttggcag cattcattcg gcctttttca      4680
     tacattgggg tagattattt tggcccctat caagttgcag ttggtcggcg agtggaaaaa      4740
     aggtggggtg tgttagtgac atgcctcaca gtacgcgcaa ttcacgtaga attagttcac      4800
     tctctcaacg cagattcgtg cattatggca ctgcgcagct gctttgctcg acgtggggtc      4860
     cctgtacaga taatcagcga tcgtggcact aatttcatag cttcagagaa gcaactgaaa      4920
     caagcactag ccgtggtcga ccaagataag atgatcaagg aattcacgtc ggcatccaca      4980
     tcatgggtct tcaatcctcc agctactcct catatgggag gctcatggga aaggctgata      5040
     caatccgtta agaagattct tgcagaaatt catttacccc atctaccgcg cgacgaagta      5100
     ttgagaagca gcttaattga ggttgagaac atagtaaata gtcggccatt aacccacgta      5160
     cccatcgagt tcgaatcatc tccagcgttg acgcccaacc atttcctggt tgggtcctcc      5220
     aatggtctta agcctcttct accatttgat gatagcgcca aggccctgca gcaggctcat      5280
     aagacgtccc agacactagc caacattttc tggaaaagat gggtttgcga atacctccca      5340
     acgataactc gcaggtcaaa gtggttttca gcagtcaaac ccatcgccgt tggtgatata      5400
     gtgattattg tggatcctaa gctcccgaga aattgctggc caaaaggaag ggtattagct      5460
     acaacggttt ccaaggacgg acacgttagg caagcgacgg tgcaaactgc aacaggtatt      5520
     tttcaacgtt cggcagtcaa ccttgctata ctggatgtcg gtgcaaatac ttgtaggccg      5580
     gaagtacgtc cggctaccgg gggggac                                          5607
//
ID   BEL-276_AA-LTR repbase;    DNA;    INV; 483 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-276_AA_;
KW   BEL-276_AA-I; BEL-276_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-483
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2561-2561 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 483 BP; 159 A; 92 C; 92 G; 140 T; 0 other;
     tgttgattgc gcccattgtg cgccatcgca cctcccatca gttgctttat tcccggctgt        60
     catgttaggt tcgacagatc gtgtaaagtc atctgacaat aaggaaagta aaaagaaacc       120
     tattcacttg aagtttataa agtagacacg ttgaacgtga gtcaatctta tagcctagtg       180
     ttctcgaaat taatatcgaa atactttaat tactactacg ttgaatttat cgaagaatta       240
     aattactatt ccgaacaaat tagttggttg tcggttacag caagtaacta tgaggcggga       300
     gtgattataa acagcaaagt ttattcagaa aacggagatt cgccgaaagt atctaaatcc       360
     ttgaacggtc gcccgggact cgaaagttat aaaacccaca aacgaagttt ttaatactgt       420
     catctctaat aaagcatatt caaaaactac ggaattcggt ctatatcgtt gctggacgca       480
     aca                                                                     483
//
ID   BEL-277_AA-I repbase;    DNA;    INV; 6983 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-277_AA_;
KW   BEL-277_AA-LTR; BEL-277_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6983
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2562-2562 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5947-6525] - Integrase core
CC   'TACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1579..5385,5389..6894)
FT                 /product="BEL-277_AA-I_1p"
FT                 /translation="MAPRKAASLKILAVKLQEIQIDLDDIWKFVQADDENI
FT                 TATDVNMRLARVDELWERYGETLIEIKCHEDYDADDETYNKERLVYSNLYY
FT                 RAKSSLTDKAKELQGTPELDQSTRANDSNLHGVLDHVRLPQIKLQSFNGDI
FT                 DEWISFRDLFTSLIHWRTDLPEVEKFHYLKGCLQGEPKALIDPLKITQANY
FT                 QIAWDTLIKRYNNSKQLRKRQVQSLFNLPSLSKESVSDLHTLVEGFERVVQ
FT                 TLDQVVQPAEYKDLLLVSLLTNRLDPVTRRGWEEFSASNDQDTLKDLTEFL
FT                 QRRIRVLESLPTRTTEFKGTQPTRPQSQKQKQSLVKASYNTTQLPSGKRCV
FT                 VCKEDHFLFQCATFQRMSVLDRDALLKTHSLCRNCFKMGHLSKECQSKFNC
FT                 RNCKGRHHTMVCFRSEKDSSAKVAAVARGNHPSNPREPSEVNEASGSGSSQ
FT                 VVTMAATDISVSGAAQQYSSQVLLATAVIVVEDDEGGQFLARALLDSGSES
FT                 NFITERLSQRMKTHRERVDISVRGIGQAGTKVKQKIQAVVRSRVSPFSQTM
FT                 SFLVLRDVTVNLPTATINTDGWSIPPGVKLADPAFFESSRVDMVLGIESFF
FT                 DFFETGRRITLGNQLPTLNESVFGWVVSGGLCNTSQDLRITCNASATENLE
FT                 SLVARFWSSEEVGLVKVLSPEEKRCEDLFQNTVQRNSDGRYTVTLPKKEGA
FT                 VTQLGESKEIAIRRLQGTERRLSRNSNLHKSYHDFMEEYESMGHMEKMDVA
FT                 FLASERRCFLPHHPVFKEDSTTTKVRVVFDASCATSSGVSLNDVLLVGPVV
FT                 QEDLRAIILRSRTKQIMLVSDVEKMFRQIWVHPDDRPLQCILWRSNPQDEV
FT                 SVFELKTVTYGTKPAPYLATRTLKQLAMDEEATFPLGSRAASEDTYMDDVI
FT                 TGADSVEQACELRKQLSEMAERGGFRLRKWASNYPKALEGLPEDNLAIREV
FT                 DGINLDPDPSVKTLGLTWMPRSDQLKFKFDIPSVKSVQQFSKREVLSIIAT
FT                 LFDPLGLLGAAITTAKIVMQLLWKFRDVNDRALDWDQPIPSTVGEVWRKYL
FT                 AQLHLLNEIRIDRCVVISGAVSTEIHCFSDASEKAFGCCIYVRSVDAAGGI
FT                 KVQLLSSKSRVAPLKCQTIPRLELCGAVLSTQLFEKVRDSLRTPSQPYFWT
FT                 DSTCVLRWVQATPTTWTTYVANRVSKIHTISNPEQWRHVPGIENPADLISR
FT                 GIMPEDIVGNDFWWRGPRWLGADPQQWPKPPKSLRVDEAEEEKRRTAVVCT
FT                 GSQDAEFSWYLGRSSSYTELVRRTAYCLRFVELLRTSKKQRSPPKFLTSKE
FT                 LGKAEITVVRLVQQEFFVEEWKALSKGETIPRKSPLRWFNPYISEDQVIRV
FT                 GGRLRHSEETEERKHPMVLPAGHQLTRMILRHYHEKLLHAGPQLLLATVRL
FT                 RFWPLGGRSVARNIVHRCVKCFRCKPSSMEQFMGELPAARVTVSRPFSQTG
FT                 VDYCGPFYVRPAPRRPAVKMYVAVFICLCTKAVHLELVSDLTTDRFIQALR
FT                 RFTSRRGKAKDMYSDNGTNFVGACNKLRELYKLVRSQEHQELLAKHCLEEG
FT                 TQWHFNPASSPHFGGLWEAAVRSAKGHLVKVAGETPMSPEDFNTLLVQVEA
FT                 CLNSRPLTPMSDDPSDLEPLTPAHFLIGSSLQAHPDADLENVPMNRLDRYQ
FT                 LVQKIFQDFWKRWRREYLCQLQGRNKRWKPPIQIDVGKLVVIREDNLAPLR
FT                 WKMGRITDVHPGADGVVRVVTVKTASGFLKRAVEKLCLLPFPQPTSNQSDQ
FT                 "
XX
SQ   Sequence 6983 BP; 1781 A; 1645 C; 1817 G; 1737 T; 3 other;
     tttttggtcc ttcgaaccgg atcttgttgg accacggaag gactggaact agcatctgga        60
     tcgctagtag ttacatcgcg cttggtttta cgccatcatt actggacggg tacaaaggag       120
     acaatcgcca ttcccagcgc gatcaattgt caccccgcca tcacactcgc ggacaatcga       180
     attgggcatt ttggagacta cactacatct gattttggat ttcgcgctgc atcccaattg       240
     gcttggcttc ggatttggac attcgccggt tggacatttt gtgttggtga gttggaacca       300
     ttctatatgt cctgccgaag cttggacgaa attctcttac taaccggtgc ttttcgaaac       360
     ctctgcatat aaaccccgtg cgagcgattg tgattgatcg ctgaaattga tgagtgcgcc       420
     tgaaggatac cgtcaaccga tgctagattg gactttggtc gacctggaat gcaacgtgag       480
     tctgtgcatg atccgaactg gttctcgtga caagtgtgct gcgaacgctg gacgactcgt       540
     cggaaaatag gtggaatacc tcgccgaact actgaaccag tgacgtgttc tgatctccca       600
     ggtaaattac acatagttca gtatatgtcc ggccgaagcg aagattgcat gactctaacc       660
     acggtatttc gtcgtgttta ttctatttgc acctgttcgg agtaacccct acgatcggca       720
     agtctggccg gtgaactcta cgaatcggag tggcgttttg caccactttc cccatctgtg       780
     gtgtgctact ggattggagt caactcgacc acacgatctg ctacgactgt tggagtacta       840
     caacccgaaa catcccttgc atgtgtggac atccatatcg acaagtgata gaagaggcca       900
     cgctttcaac tacctgtcca ggtgagtcac tttgagtgta tatgtcgccg aagcgggacg       960
     acagtgaaat gcacttttta atgaattgaa atcctcttcg acaaacgatt ccctgagtgc      1020
     acttgatgca gttttttgca aatttggaac gattttggat tgagcactat tttgggcttt      1080
     tgcgcggctg ttggtttctc aggtgagtca ccacagtata tgcccagtcg aagcaatcat      1140
     tttgttatta caccctggtt ttcccttcct ctggataccc cacctaatct tggttgacgt      1200
     tgagcattac gaatactatc gagcacaatt ttggaatgcg atttgggttt tatgatttgg      1260
     gaactgctgt tagttgtgaa ggtaaatact acggtatatg tccagccgtg gctaggtctg      1320
     ttggatacta catgcaaccc ctctcctcct cttccgtaca cattcctgca attgtgagct      1380
     gtgctgtgac aacactcctg aagacaacga ttaaccactg gagatcacgg attcttgctt      1440
     cgctgcacat ttgatgggaa ctgcattata ctgtgtcagg taaatttaca cagtatatgc      1500
     ccgccgaagc ttggattcac gtggatcact acacccctca ccttattctc gtttcctgct      1560
     tgagtgacgt ggaacaacat ggcaccccgg aaggcagcat cgctgaagat cttggctgtc      1620
     aaactccaag aaatccagat cgacttggac gatatttgga agttcgttca ggctgacgac      1680
     gaaaatatca ccgctactga tgtcaacatg cgtttagcca gggtggacga gctttgggaa      1740
     aggtatggtg agacgttgat cgaaatcaag tgccatgagg actacgatgc tgacgatgag      1800
     acctacaaca aggagcgtct agtctacagc aacctgtact atcgggcgaa gtcatccctt      1860
     accgacaagg cgaaggagct acagggtaca ccagagctgg accaatcaac gcgtgccaac      1920
     gattcaaact tgcatggtgt tctcgaccat gtgcgtttgc cgcaaattaa acttcaatcg      1980
     ttcaacggtg acatcgatga gtggattagt ttccgtgatt tattcacttc tctgatccac      2040
     tggaggaccg atcttccgga agtggaaaaa ttccactatt tgaaagggtg tcttcagggg      2100
     gagccaaagg cgttaatcga ccctttgaag attacgcagg ctaattatca aatcgcgtgg      2160
     gataccctta tcaaacgcta taataatagc aagcagctta ggaaaaggca ggtccaatcg      2220
     ttgttcaatc tcccttcgct ttctaaagag tcggtttctg atttgcacac tcttgttgag      2280
     gggttcgaaa gagtcgtgca aactttagat caagtcgtcc agccagctga gtacaaggac      2340
     ctcctgctcg tgagtcttct caccaatcgc ttggaccctg taacccgtag aggatgggaa      2400
     gagttttcgg cttcaaacga tcaggatact ttgaaggacc tgacggaatt tctgcaacga      2460
     aggattcgag tgctcgagtc gcttccaacg aggactactg agttcaaggg tactcagcca      2520
     acacgcccac agtcccagaa gcagaaacaa tcgttggtga aagccagcta caatacaacg      2580
     caattaccat cgggaaagcg gtgcgtggta tgcaaggagg accacttcct ctttcaatgc      2640
     gcaacgtttc aacgaatgtc ggtgcttgac agggatgcac tgctgaaaac ccactcccta      2700
     tgcaggaact gcttcaagat gggtcatctc tccaaggaat gccagtcaaa attcaactgt      2760
     cggaactgta agggtcgcca ccatactatg gtgtgtttta ggtcggagaa ggatagttct      2820
     gcaaaggtcg cagcggttgc taggggcaat catccttcaa atccaaggga accttccgaa      2880
     gtcaacgaag cttctggatc gggttcatct caggtggtca ctatggcagc caccgacata      2940
     tcggtatccg gtgcggcaca acagtattct tcccaagttt tgctggcaac tgcagttatt      3000
     gtcgtggaag atgacgaagg tggacagttt ctcgctcgag ctcttctgga ttcgggttcg      3060
     gaaagcaact tcatcacgga gcggcttagt cagcgaatga aaactcatcg agaaagggta      3120
     gacatctcgg tgcgtggaat tggtcaagca gggaccaagg tcaagcaaaa aatccaagcg      3180
     gtggtgcgct cgcgagtttc tccattctcg cagacgatga gcttcctcgt tcttcgtgac      3240
     gttacggtga atcttccaac tgctactatc aacacggatg gttggtcgat tcctccaggg      3300
     gtcaaactgg ctgatcccgc tttctttgag tccagcagag tggacatggt gctcggtatt      3360
     gagtcgttct tcgacttttt cgaaacaggt cgaaggataa cgcttggcaa ccaactgcca      3420
     acgctcaacg aatcggtttt cggatgggtg gtgagtggag gcttatgcaa cacaagtcag      3480
     gatcttcgca tcacctgcaa cgcttcagca acagagaatc tggagtctct agttgctcgg      3540
     ttttggtcca gtgaagaagt tggtctggtc aaggtactct caccagagga aaaacggtgt      3600
     gaggacctat tccaaaatac agtccaaagg aattccgatg gtaggtacac cgtcacatta      3660
     ccgaagaaag aaggcgctgt cacacagctg ggagaatcta aggagattgc tatccgacgc      3720
     cttcaaggta ccgagcgcag attgagcagg aattcgaatc tgcataaaag ctatcacgac      3780
     ttcatggagg agtatgaatc gatgggacac atggagaaga tggatgtggc tttcttggct      3840
     tcagaacggc ggtgttttct acctcatcac cctgtgttca aggaggacag cactaccacg      3900
     aaggtcaggg tggtgttcga cgcttcgtgc gcgacgtcat ccggcgtgtc gctcaacgat      3960
     gtgttactgg ttgggccggt agtacaggag gatctcaggg caatcatctt gcgaagtcgc      4020
     accaagcaga tcatgcttgt ctcggatgtc gagaagatgt tccgacaaat atgggtgcat      4080
     ccggacgaca gacctctcca gtgcatcttg tggcgctcca atcctcagga cgaggttagc      4140
     gtgttcgagt tgaagaccgt gacgtacgga accaagccgg caccgtattt ggccacaaga      4200
     acgctcaagc agttggcgat ggacgaagag gcaacgtttc ccctcggttc aagagcggcg      4260
     agtgaagaca catatatgga tgatgtcatc actggggcag attcagtgga acaggcttgc      4320
     gaacttcgta agcaactgag cgaaatggcg gaaagaggtg gattcaggct caggaagtgg      4380
     gcgtccaatt atcccaaggc cttggaagga cttcctgagg acaacctagc gatccgagag      4440
     gtagacggaa tcaatttgga tccggacccg tccgtgaaga ccctcggact tacctggatg      4500
     ccgaggagtg atcaactaaa attcaagttc gacattcctt cggtaaaatc agtccaacaa      4560
     ttctccaaaa gggaagttct ttccatcatt gcaacgcttt tcgacccttt aggccttctc      4620
     ggagcagcaa taacaactgc aaagatcgtg atgcagcttt tatggaaatt ccgagacgtc      4680
     aacgatcgtg cgctggactg ggatcagcca ataccttcga cggtgggtga ggtttggagg      4740
     aaataccttg cacagcttca tctactgaac gaaataagga ttgatcgttg cgttgtcatt      4800
     tcgggtgcag tttccacgga aattcattgc ttctcggatg cttctgagaa agcgtttggc      4860
     tgctgtattt atgtaaggag cgtagatgca gcaggaggga ttaaggtgca gcttctttca      4920
     tccaaatcac gagtagcgcc cctgaaatgc caaacaattc cacgtttgga gctttgcggt      4980
     gctgtattat caacgcaact tttcgaaaag gttcgagatt ctctgagaac tccttcgcag      5040
     ccgtacttct ggacggattc cacctgtgtt ctgcgatggg ttcaagctac accgaccacg      5100
     tggaccacgt atgtggccaa ccgagtgtca aaaatacaca cgatctccaa tccggagcaa      5160
     tggagacacg ttcctggcat agagaaccct gccgatctga tttccagagg aatcatgccg      5220
     gaagatatcg tcggaaacga tttctggtgg cgtggaccgc gttggttagg tgcagatccg      5280
     cagcaatggc cgaaaccacc gaagtcatta agagtggatg aagcagagga ggagaagcga      5340
     cgtacagctg tcgtttgtac cggttcccaa gatgcagaat tcagcnattg gtatttggga      5400
     cgatcatcat cgtacaccga actcgtccgt cgaacagcgt actgcttacg gtttgttgaa      5460
     ctgttgcgta cttcgaaaaa acagcgaagt ccaccgaaat tcctgacatc aaaggagtta      5520
     ggaaaggcgg agatcacggt tgtgcgactg gttcagcaag aattcttcgt tgaggaatgg      5580
     aaggcgcttt caaaaggaga aacaattcca aggaagtcac cattaagatg gtttaatccg      5640
     tacatctccg aggatcaggt catccgtgtt ggaggcaggc tacgccattc ggaggaaacc      5700
     gaggagagaa aacacccgat ggttctgccg gccggtcacc aactcaccag gatgattttg      5760
     cgacactacc acgaaaaact gctgcatgct gggcctcagc tgttattagc aactgttcgt      5820
     ctgcgattct ggccgttagg gggaaggagt gtagcacgga acatcgtcca ccgatgcgtg      5880
     aaatgtttcc ggtgcaaacc gtcgtcgatg gaacagttta tgggtgaact accggctgct      5940
     cgagtaaccg tgtctcgtcc cttctcgcag accggtgtgg actattgcgg accgttctac      6000
     gtacgaccag caccgcggcg tccagcagtc aagatgtacg tagcggtatt tatctgcctn      6060
     tgcaccaagg cggtgcatct ggagcttgtg tccgacctta ccactgatcg gttcatacaa      6120
     gctctgcgtc ggtttacatc caggagaggg aaggcaaaag atatgtactc cgacaatggt      6180
     accaactttg tcggagcctg taacaaattg cgcgagttgt ataagttagt cagaagtcag      6240
     gagcaccaag aattacttgc caaacattgc ttggaagagg ggacccaatg gcacttcaac      6300
     ccagcaagtt ctccgcattt tggaggcctg tgggaggcgg cagtgcggtc cgctaagggt      6360
     catttggtga aggtggcagg tgaaacgcca atgtcacctg aagatttcaa tacattactc      6420
     gtccaggtag aggcttgtct gaattctaga ccgctgacac caatgtcgga cgaccccagc      6480
     gacctagaac ctttaacacc ggcacatttt ttgatcggat cgagcctaca agcccatccg      6540
     gatgcagatt tagaaaacgt tccgatgaac cgcttggatc ggtaccaact ggtacagaaa      6600
     atcttccaag acttttggaa gagatggagg cgtgagtatt tgtgtcagct tcaagggagg      6660
     aataagcgct ggaaaccacc gatacaaatc gatgtcggca agcttgtcgt aatccgagag      6720
     gataatctgg cgccattgag atggaaaatg ggccgcatca ctgatgtcca tccgggagcc      6780
     gacggagtag tgagggtggt cacggtaaaa actgcttctg gatttctaaa gcgagctgta      6840
     gagaaacttt gtcttctacc gtttccgcag ccaacgtcca accaatcaga ccaatgattc      6900
     tggaattccc ttccttccca ttcccgtcga agaggatctg tttttctttt cagaaattgg      6960
     agcaattcct nggtgggtga gga                                              6983
//
ID   BEL-277_AA-LTR repbase;    DNA;    INV; 686 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-277_AA_;
KW   BEL-277_AA-I; BEL-277_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-686
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2563-2563 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 686 BP; 185 A; 154 C; 165 G; 182 T; 0 other;
     tgttgtggag tactatcgca tcccttagcc ccttcttact acagccctgg atcacagtaa        60
     ccaactgcga ccacacaata ggtctactgc agatcagcta ggcaggcagg ctatggatag       120
     cagacgatgg taaacaacat tcgtggctac ctgctttgct ggatgaccac tgcactgcta       180
     tagcagcatg ggagatcgtt ggagagcggt ccatctgaat ttgcagtggt ggatatgttg       240
     caggagattg aagaggagag agatctgatt ctcatctctg tatccgatca ttttgagatc       300
     cctaccctag gtttaggagt tacctttcgg tttcgtaagc ggcagttaac atcgaccatt       360
     cctttagatc gcaggcgcgc cggttagagg cctacgcacg gccatacttt aaatgtttcg       420
     tgttttagtt taagagaatg ttagaatata agcagaataa atgtagtccg tgtagttcag       480
     tgttttaaaa caaatatagt gttttgttat ttaccgcgag tgttttaata attgctgcca       540
     tggaagaata aggccaaatg aacccagtgt cccccgaaag gaaattcgat gacggattgt       600
     tgcccaccca acccaaccac aactctggtc gagtgctgag gagccaccca acaaatcgaa       660
     ggaggtaatt cccgggttcc ccaaca                                            686
//
ID   BEL-278_AA-I repbase;    DNA;    INV; 6009 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   12-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-278_AA_;
KW   BEL-278_AA-LTR; BEL-278_AA-I.
XX
NM   BEL-278_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6009
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2564-2564 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5072-5620] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6007
FT                 /product="BEL-278_AA-I_1p"
FT                 /translation="MAHKTANPSNLESNDQTVNASACPACDRPDWADDMVQ
FT                 CEDCEDWYHFSCAGVSPAVAKRRWVCDDCSPISVSSRSSSASKALELQRLQ
FT                 EEQQIRRRRFLQEKALEKKRLAQERQQILEEEELEKTFLQEKFNLLEMQEG
FT                 TERGSVASSKSRRSNHESIMQWMRNDGNNEPTGSTPKDAIKQATNPESVLH
FT                 NKPSRGVRNLVSSHFAVDDSTLPLQPTTSRNAQSKVDSSVFASAVDQKIVP
FT                 YLQPIPQPRAPFPQPSPRLQQPLHSAPPAPPVSALGDDASIDVPPLPFEYA
FT                 SSEVEVERRLRRSGARVKRVAPPEQNVSPTERLGQVPAQPPRYARYCEPRD
FT                 CARTHNENSSEIAGLGPTSTQIAARRVMSRDLPDFDGNPEDWPIFISQYEI
FT                 TTESCGFSNAENLVRLQRCLKGHARESVRSRLLLPASVPQVIETLRMLYGR
FT                 PGLLITALLNRVRVAPAPRLERLETVIEFGMELQGLCDHLQASGETAHLNN
FT                 PSLLQELEDKLPSQMKLQWAMHKQTVLNVTLQTFATYMSHMVTAASQVTKL
FT                 VDSSVDRRSTDQKKGGNRKEKAQLYAHASQSTESPPSAVTNSSTNKEANTR
FT                 NCAVCDRPDHRIKDCKQFLDLNVENRWRCIHKLKLCRTCLNAHGRNRCRLS
FT                 TKCGIDGCEFKHHPLLHSTLVNQIKPITAENHSHRDQDSKTLFRVVPVTLS
FT                 GRSGKIQTYAFLDDGSDLTLMEKSIAQELGESGPKGRLYLNWTSNVTRCEV
FT                 DSEEVSFGISGLNGDKSFQIQSARTVSELKLPIQSLNIEQLTQKYPHLKGL
FT                 PISGYEDAVPRILIGLDQLNLSLPLKCREGRKGDPVATKTRLGWCVYGGST
FT                 STKSVGVSCHIMSHPEKDLHDVVKYYFAQEDAGAKPALQLESTETTRARQI
FT                 LSDTTVRLPERFETGLLWRFDHFEFPESYSMALRRLESLERKMSREPLLKA
FT                 SVFQQIREYQEKGYAHRATEEELLTADPRRIWYLPIGVVTNPKKPGKVRLI
FT                 WDAAAKVDGISLNSVLLKGPDLLCPLPGVLFRFRERPIAISGDIREMFHQL
FT                 RIRSEDRHAQRFLMRENPSREPDIYLMDVATFGSSCSPCSAQFVKNRNAED
FT                 FAQDYPRAVEGITKCHYVDDYLDSFDTFEDAQRVAAEVKMIHTKGGFEIRG
FT                 WRSNSPEVLMHLGETTAQTTKDLQLDNHGDMERVLGMLWLPTDDVLGFSTQ
FT                 MRKDIAAIIEDGERPTKRQVLRCVMSLFDPLGLLAMYTVHGKILIQSIWRS
FT                 EKDWDEKIGDEEFRRWMKWISVLNQIDGIRLPRCYIGRTVSSAISSVQLHL
FT                 FVDASEEAYAAAAYFRFTLVDGTVMCNLIAAKTKVAPLKPLSIPRLELQAA
FT                 VLGTRLASFIGDNHTISIEKRFFWSDSSTVLAWIRSDARRYRQYVACRVGE
FT                 ILTTTGSSEWKWVPSKMNPADEATKWGNGPHLSSNGSWFQGPEFLNSSEQQ
FT                 WPLQERPKNVCTEEELRSCFVHGISRGESTIQVTRFSCWSRLLRATAYMMR
FT                 FISNCRRTREQRNIGLLDSDELRNAENVLWKFCQAEAFPNEISLLRMGKAE
FT                 VEKSSPIFNLSPYLDEFGILRQNGRIGSASNVGFNIKYPIILPNSHPITVL
FT                 LLDHYHRRNHHVNFETIVNEMRQNFYIGRLRAAVRKTARTCQWCKTYKSQP
FT                 STPKMAPLPAARLASFERPFSYVGVDFFGPILVKVGRSHAKRWVALFTCLT
FT                 IRAVHLEVAYSLSTESCITCFRRFVARRGAPLEVYSDNGTNFQGAEKQLRE
FT                 QISNGLADTFTNANTKWFFNPPSAPHMGGAWERMVRSVKVAIENIDSGRKL
FT                 HDEGLLTLLAEAESMVNSRPLTYLPLDSEEQEALTPNHFLLGSTSGVKQPP
FT                 ATPTNHREAILNNWKQVRHQSDLFWHRWLKEYLPTICRRTKWFSDTKPIKS
FT                 GDLVLIAESTKRNSWIRGRVTELQPGPDGRVRQAIVQTSSGFVKRPVCKLA
FT                 LLDVNESGKTAVDTQSYGGG"
XX
SQ   Sequence 6009 BP; 1711 A; 1449 C; 1488 G; 1361 T; 0 other;
     aactcaagaa tttattgcta cgatggcaca caagaccgcc aatccgtcca acctcgagag        60
     caacgatcag acagtcaatg caagtgcatg cccagcatgt gatcgtccag attgggccga       120
     cgatatggtc caatgcgagg attgtgaaga ttggtaccac ttcagttgcg cgggtgtatc       180
     ccccgccgtt gcgaaacgcc gttgggtttg cgatgactgt tcgcctatca gtgttagcag       240
     ccgatcatcg tcggctagta aagcgcttga gctgcaacga ttgcaagaag agcaacaaat       300
     tcgccgccga cggtttctcc aggaaaaggc tttggaaaag aaacgattag cgcaggaacg       360
     gcagcagatt ttagaagaag aggaattgga gaaaacgttt cttcaagaaa agttcaactt       420
     acttgagatg caagagggaa ccgaaagagg cagcgtcgcg agtagcaaga gtcgtagaag       480
     taaccatgag agcattatgc aatggatgcg gaacgacgga aataatgagc ccactggcag       540
     tacgccaaag gatgcgatca agcaggcaac aaatccggaa tccgttttac ataacaaacc       600
     atctcgtggg gttagaaatt tagtttcatc ccacttcgcc gtcgatgact ctacgcttcc       660
     ccttcaaccc actactagca gaaacgcaca gagtaaggta gactcatcag tattcgcctc       720
     agcggtcgat caaaaaatcg taccgtatct gcagccaatt cctcaaccgc gagcaccttt       780
     ccctcaacca tctcctcgtc tacaacaacc cttgcattca gcgcctccgg caccacccgt       840
     cagtgctctg ggggacgacg ccagcatcga cgttccaccg ttgcctttcg aatacgcttc       900
     ctccgaggtg gaagttgaac gacgtcttcg caggagtggc gccagggtga aacgagtagc       960
     acctccagaa caaaatgtgt ctccaacaga gcgccttggt caagttccag ctcaaccacc      1020
     aagatatgca aggtactgcg aaccacgaga ctgcgccaga acgcataatg aaaattcatc      1080
     cgaaatagcg ggactcggtc ctacatcgac gcaaatcgca gctcgtcggg tgatgtctcg      1140
     tgatcttcca gacttcgatg gaaacccgga agactggcca atatttatta gtcagtacga      1200
     aatcaccacg gagagttgcg ggtttagcaa cgcagaaaat ctggttagac tccaacgatg      1260
     cttaaaagga cacgctaggg aatcagtgcg cagtcgtctt cttttgccgg catcggtccc      1320
     tcaagtgata gaaacacttc ggatgttata cggccgaccg gggctactca taacagctct      1380
     attgaataga gtgcgcgttg cgccagctcc aagattagaa cgccttgaaa cggtgataga      1440
     gttcggaatg gaactgcaag gtctttgcga ccatcttcaa gcgtcaggag aaactgctca      1500
     tctgaacaat ccttctctgc ttcaagaatt ggaagataaa ttgccatctc aaatgaagct      1560
     tcagtgggca atgcacaagc agaccgtatt gaacgtgacg cttcaaactt tcgcgactta      1620
     catgtcgcac atggtcacgg cggcgagtca agtaaccaaa ttggtggatt cttctgtgga      1680
     tcgccgttca accgaccaga agaaaggggg aaaccgcaag gaaaaggcac aactgtatgc      1740
     acacgcatcg cagagcactg aaagtccgcc gagcgcggtt accaattcga gcacaaataa      1800
     agaagcgaat acgcgcaact gtgcagtttg tgatagacca gatcatcgta tcaaagactg      1860
     taagcagttt ttggatctga atgtggaaaa tcgttggcgc tgcatccaca agctcaagtt      1920
     gtgtcgtact tgtcttaacg cacatggaag gaatcgctgt cgactgtcga ccaagtgcgg      1980
     aatcgatgga tgcgaattca aacaccaccc actactccac tctacattgg tgaaccagat      2040
     aaaaccgatc actgctgaaa atcattcgca tcgagatcag gattctaaaa cgttgttcag      2100
     ggtcgttccc gtgacgctgt caggaagatc cggaaaaata caaacgtacg cctttttaga      2160
     cgacggttcg gatctgacat tgatggaaaa atcgatagcc caggagcttg gagaatccgg      2220
     accaaaagga agattgtatc tcaactggac cagcaatgta acacggtgcg aagtcgattc      2280
     cgaagaagtg tcgtttggaa tatcgggact aaatggggac aaatcttttc aaattcagtc      2340
     tgccagaacg gtatccgagc tgaagctccc catacagtcg ctgaatatag agcaattgac      2400
     ccaaaaatac ccgcatttaa aagggcttcc aatatcagga tacgaagacg ctgtgccaag      2460
     aatactgatc ggtttggacc aactgaattt atcattaccg ctcaaatgca gagaaggtcg      2520
     gaaaggtgac ccggttgcta ccaaaactag actcggctgg tgtgtctacg gtggaagtac      2580
     cagcacaaaa tctgtcggag taagctgcca tatcatgtcg caccctgaga aggaccttca      2640
     cgacgtcgtt aagtattatt ttgcacagga ggatgctggt gccaaaccgg cattacaact      2700
     ggaatcaaca gagaccactc gagcaagaca aatcttgagc gatactaccg ttcgcttacc      2760
     tgaaaggttt gaaacagggc ttctttggag attcgaccat ttcgaattcc cagaaagtta      2820
     ttccatggct ctccgacgtc tggagtccct ggagaggaaa atgtctaggg aaccattgtt      2880
     gaaagcaagc gtgtttcaac aaatccgcga ataccaggaa aagggctatg cgcatcgtgc      2940
     caccgaagaa gaactgttaa cagctgatcc tcgtcgaatt tggtaccttc cgattggtgt      3000
     ggtgaccaat cctaagaagc ccggtaaggt tcgattaata tgggatgcgg cggccaaagt      3060
     tgatgggatc tccctcaatt cagtcctact gaaaggaccc gatttgctgt gtcctcttcc      3120
     tggcgttctg ttccgattcc gagaaaggcc aattgcgata agcggtgata ttcgtgagat      3180
     gtttcaccag cttcgcattc gatcggagga ccgtcacgca caaaggtttt taatgaggga      3240
     aaacccaagc cgagaaccag acatttatct catggatgtc gccacgtttg gctcgagctg      3300
     ttcaccgtgt agtgcgcagt tcgttaaaaa cagaaacgca gaagattttg cacaagacta      3360
     tccaagggca gtggaaggaa taaccaagtg ccattatgtg gacgactact tggatagttt      3420
     tgatacgttt gaagacgctc aacgggtagc agctgaagta aagatgatcc atacaaaagg      3480
     cgggtttgaa atccgaggat ggcgctccaa ttctccggaa gttcttatgc acctaggaga      3540
     aacaacggct caaacgacca aagatctaca actggataac cacggcgata tggaaagagt      3600
     tctcggaatg ctgtggctac caaccgacga cgttttgggg ttttcaacac aaatgaggaa      3660
     ggatattgct gcgatcattg aggacggcga acggccgact aagcgacaag ttttgcgatg      3720
     cgttatgtcc ttgttcgacc cccttggact tctggcgatg tacacagtgc atggcaagat      3780
     cttgattcaa tccatatggc ggtcggaaaa ggattgggat gagaaaatcg gagacgaaga      3840
     atttcgtcgt tggatgaagt ggataagtgt cctgaaccag atcgacggca tccgtcttcc      3900
     tcgctgctac ataggccgaa cagtatcttc tgcaataagc tccgtccagc ttcacttatt      3960
     tgtggatgca agcgaagaag cttacgctgc cgccgcctac tttcgcttca cgctcgtaga      4020
     tggaaccgtc atgtgcaatc tgattgcggc gaagacaaag gtggctcccc ttaagccgct      4080
     atctataccg cgattggagc tacaagcggc agtccttggt actagactag cttccttcat      4140
     cggcgacaac cacaccattt caatcgaaaa aaggtttttt tggtcagact ccagcactgt      4200
     tcttgcatgg attcgttccg atgcgcgtag gtaccggcaa tacgttgcat gtcgggttgg      4260
     tgaaatcctc acaacaacgg gaagcagcga gtggaaatgg gtacctagca aaatgaatcc      4320
     tgcagacgaa gctacgaagt ggggcaatgg tccccatcta tcctcgaacg gaagctggtt      4380
     ccaaggacca gagtttttga attcttccga acaacaatgg ccactacagg agcgcccgaa      4440
     gaacgtttgc accgaagaag aacttcgatc ctgtttcgta catggaatct cgcgaggcga      4500
     atcgacaatt caagttacac gtttttcctg ctggagccgg cttttaagag caacagccta      4560
     catgatgcga ttcatcagca attgtcggag aactagagaa cagcgaaaca taggactatt      4620
     ggattccgac gaattgcgga acgctgaaaa cgttctctgg aaattctgtc aagcagaagc      4680
     atttccgaat gaaatatctc tactaagaat gggaaaagct gaagtagaaa aatcctcacc      4740
     gatcttcaat ctgtcaccct acctcgatga atttggaata ctgcgccaaa acggacgtat      4800
     tggttcagcc tccaatgtcg gattcaacat caagtatccg atcattcttc cgaactcaca      4860
     tccaattaca gttctgcttc ttgaccacta tcaccgtcga aaccaccatg taaacttcga      4920
     aactatcgtg aacgaaatga ggcaaaactt ctacattggg cgacttcgtg ctgcagtgcg      4980
     taaaacggct aggacttgcc aatggtgcaa gacttataaa tctcaaccgt caaccccgaa      5040
     gatggcacca ttaccagccg ccaggttagc gtccttcgaa cgcccattct cttacgtggg      5100
     agtggatttc tttgggccga tattagtgaa ggtcggacgc agtcacgcaa aacgctgggt      5160
     cgctcttttt acgtgcctaa ccataagggc ggttcattta gaagttgcgt acagtttaag      5220
     tacagagagc tgcatcactt gctttcgtcg ttttgttgcg cgtcgaggag cgcctttaga      5280
     agtctacagt gacaatggca ccaattttca aggtgcagag aagcagctta gggagcaaat      5340
     tagtaacgga ttggcggaca cctttactaa cgccaatacc aaatggtttt tcaatcctcc      5400
     gtctgcacca cacatgggtg gcgcttggga gaggatggtg cgctccgtaa aagtcgctat      5460
     cgagaacata gacagtggac gaaagctgca cgatgaagga ctcctaacgc tcctagccga      5520
     agctgagagt atggttaact cccgaccgtt aacttatctg ccgttggatt cagaagaaca      5580
     ggaagcccta acgccgaacc acttcctgct cggcagcacc agcggagtta aacaaccacc      5640
     tgctactcct accaatcatc gtgaagcaat cctcaacaat tggaaacagg tacgacatca      5700
     atcagacctc ttctggcacc gttggttgaa ggagtacttg ccgacaatct gccgaaggac      5760
     taaatggttc agcgacacaa aaccaatcaa atcgggtgat ctagtcctca tagcagagag      5820
     caccaagcgg aacagctgga taagggggcg tgtgacggag ttgcaaccag gcccagatgg      5880
     acgagtacga caagcaatag tgcaaacaag ttcggggttc gtgaagcgac cagtttgtaa      5940
     attagcgctg cttgatgtga atgagtcagg taaaacagct gtagacacgc agtcttacgg      6000
     gggcgggaa                                                              6009
//
ID   BEL-278_AA-LTR repbase;    DNA;    INV; 664 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   12-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-278_AA_;
KW   BEL-278_AA-LTR; BEL-278_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-664
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2565-2565 (2012).
XX
RN   [3]
RP   1-664
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (12-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
SQ   Sequence 664 BP; 228 A; 126 C; 105 G; 205 T; 0 other;
     tgttaggaca caaactggca acgctgaatg tcttactctt atacgatccg gccctgtgcc        60
     aaccactcac actaatcgaa gcggtaagcc tacaactgca aaaacgacat ggatagacga       120
     taacaacaag atctagaacg atagctactc ctaaaagcgt gttgatcgaa gagtgcctca       180
     aatatataat tatatttcta gttacttaaa tactattttc aagttaccta cacctaaata       240
     ttattagtta taccatctct accgcagatt gaaattgagc gacagtaaga tcatgaatta       300
     catctaattt gatactgaat accaagtaac ctcaaattta tatcccgtag gtgaattata       360
     taattgatat gtgctgcgaa tttaagaact acaataacct taagctatag tgaacaatat       420
     gtaagttgac tggctcgatc tgttagatgc gtttgttacc ccaaatctgt ttattacagt       480
     atataatacg ttcctatagt taacatttca tctaccgtaa acatcataag cctacactaa       540
     attgtaagta ccgccatcat gtgaactatt aaagatgcta ataagaaata tattttagct       600
     tgagctgatc tggaactgat tgtttcaact gctgaaagaa gtgtagctac ttgttgtttt       660
     aaca                                                                    664
//
ID   BEL-279_AA-I repbase;    DNA;    INV; 9865 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-279_AA_;
KW   BEL-279_AA-LTR; BEL-279_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9865
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9865
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2566-2566 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1189..8964
FT                 /product="BEL-279_AA-I_1p"
FT                 /translation="MIRNKKFVVNDNGHCRLCTSPDGDDSMVACDQCDHWF
FT                 HQQCTGLKNLPKPTERWLCIQCSEYEDVMTAMTSKMNQMKMELDERAKAHR
FT                 RSEVHSSSLELELEKYKEELLKAKKEEDSKQDVLKGLADVLQRSKSRSDES
FT                 LDDNRVSEGKVLSVLMRRQLQSLPTFSGIAREWPIYKRRFLETTESGEYSD
FT                 SENLIRLQQSLSGAAARSVQALMLDPSNVQQILDRLERQFGQFQKIYKELR
FT                 DDIDRVKLSGLHTIIDMSDALENLVSHLEAMKKPEYLRDPRMTEDIVSKLP
FT                 YEMQIKWLETTSSNNSGVRTLRDLLNFIKPRADVLREMGRALPERRNRVNL
FT                 HQEAVKRCFVCDRGHQIKYCSKFRGMAALERLRLVHANGRCQICLRKHEDR
FT                 CRNYASCGINGCSGKHHPMLHLKGSPGYYSRQSKNSDSTKKKDQTEIAQTN
FT                 LHYQVPSQVFYQIIPVTIRNGPYQIKTYAFLDPGSSLTLIDSYIADQLKLE
FT                 GIPAPLKIKWTQNFSKEEKHSTRVQFELQGTSGEKFCVRDVRTVDNLQLPV
FT                 QTLDYQEMSRDYHHLRRLPIKSFKRAQPKLLIGLNQSHLLLPIDRKYDGPN
FT                 KPIAIETPLGWLIFGNISGDIHEDHIMIIQEEGEDEENLRKMMQNYFSVED
FT                 FGVKVPEVLPESKEITRAKEIIDKTLKYDGNRYEIGLLWREDNTVLPESYT
FT                 QAFKRLMNEETRFKNKEDVKVWMNATIKEYLDKGYIRKLSQEELEAWEKEI
FT                 YYLPHFIVYNKNKVPPKPRLVFDAAAKNKGVSLNSVLLAGPDATTSSFGVT
FT                 TRFREGKYATAGDIKEMFCQIKINTEDQKKQCFLFRDFDMTRKPDVYTMQV
FT                 MTFGATCSPACAQIVKNHNAEQFKEIKPKAAKAIKTQHYVDDYIDSFNTVE
FT                 EAIGTIKDVTEIHQQAGFYIRNFVSNDKNILAALPQERVQQNPLKQLEDKD
FT                 TLNEKVLGVYWNTASDSIGFELRFNRLPEAVTKGVRPPTMREVLSFVMSIY
FT                 DPMGLISHLTIHGKILMQKLHTEMTDWDEELSPQSQQQWNQWLTNIAQAKD
FT                 IRIPRWILCNQAKTFELHVFVDASEYAFATTIYTRGVGAYGQTVSVKLVTA
FT                 KAKVAPVRKLSIPRLELQAAVLGARLAQTIQEELRIVPSRTTYWSDSQTVL
FT                 SWIHSDHRKYKQFVAHRVGEILDVTKTDQWRYVPTGQNPADEGTKEVKGKS
FT                 KWLTGPSFLWNEEKEWPKSKFNSNTLEEIKDVMLVHDYDHKSFDYINEWRY
FT                 SNWNKLVKNITYIKKFTDWIKNKQSFDRIIAYHDRMMAEYAIIRKAQWESY
FT                 KSEMNDLTKNCDLTISSNIATLIPMLDEYGVMRARSRLQNAIAIPRSARMP
FT                 IILPNKHYISKLIVKNYHERYLHQGDNVVLGAIRQKYWVIKARALLKKIKR
FT                 ECQYCKNKRAAPVAPQMAPLPPCRTAMYAYPFTHTGVDYFGPIEVQVKRSI
FT                 EKRWGVIFTCMSTRATHVELAERLDTDAFLVCLKNFQNRRGKVQHLYSDNG
FT                 TNFIGAEKEMKAAINEIDKKFGGSIAAAMEINWTFNPPAAPHFGGAWERLI
FT                 QSIKKCLKAMPECTQMRKPTIEELRSALIQAEFILNSRPLTHISLDNEDEE
FT                 PLTPFHFLIGRAGEYAPPYSIPTGCLTKKQYERINLYSQHFWERWQKEYLP
FT                 TLLKRNKWTKKVEPLKEGDVVLITDKETHPGKWLKGRIVEVRRAADGQVRS
FT                 AQVKTNQGIYSRPATKIAVLDVMRKEDDRKEEPKASINHVKEISTKEHGQI
FT                 NKPKPKLQPPKTNDKTQLPIQAKRIKHPKIKDICIVNHHREVHAHQEMELP
FT                 TSSKATRKRKLTELEWAKNLQQNKILNPEKIMKTTEPEPSQGSAKSNFDSW
FT                 GKRRKLDVDKIKEMRDRWNDKASEEKSSQRLQKSESQTRKIRFSSGGALKA
FT                 LMMLFCIGTVFASEPSGLIAYDCANPDINMTSYSLLDVDSCIPTVKNLTTT
FT                 EVPIQVLQRSAKSSAMVYQCKVIIKRIVKHCGIHSHTSDYERRYAYIVREF
FT                 TPEECRRIHLLGTLPLTVNAGLSELKRNHTTRGETLVVGSVWSSHCSGGVY
FT                 KTPEYTWLDALVYFEYDVSLYNYVATVDHENDQILLRHGIVCPYSHGKCLD
FT                 SEDGYSTWEVSLDRRCEDTEFEVIYEGTVNKTTNEDGEKKSNQAVYTAISD
FT                 SHLFSIRTKQATQICGYKGHATDHPRIFILESSSFKSPFSRRPASVRNYDL
FT                 FTYFNSKITLVENYIGKRLDDVYRTVMTEMCKLDKALLETKLTLARINPME
FT                 FVTSIMRRSGFSAVVAGEVLHVLQCKPVYVQPFASERCYQELPVKYGNDTM
FT                 FLTPVTRTLQMRGTEIECTPLLPAKFQFGGRWYTFDGKIRETIPPQKLATE
FT                 IVTKWRYTPLPNLMESGIYDQESIQKMRTMIYDQGDRRIASNVVHKMLTGQ
FT                 SPNRQGFHFEALVSEKIIDNVINKYWNKIISLSTALGNFTSTMIGLYLLGR
FT                 CIKFLIDTIMHGRILYDIYGFGWQLIASFWDSMTSFLSHRNTLRNINRKKH
FT                 EVAGTELEEIRVTLLPESQQTSQPEIRKPTKLKKSIVNPKQGNPTTSQDDK
FT                 TEDKP"
XX
SQ   Sequence 9865 BP; 3652 A; 1867 C; 2042 G; 2304 T; 0 other;
     atttggtggc tccagagagg agcaaagttc tcaagtgcaa gtgtggtgag taccaacaat        60
     acaggtgagt caagggttag cgacacccta aagttcgcaa attattgcat gcttaaagtg       120
     aagtggagaa aaagtgaatt ggaaagcaat tttcttttaa tatcacaaag aaagaaaaaa       180
     taaaagaaat aaattctctc gggatatacc ttaatttttc cttcaatgtc gggcgacgcg       240
     ttgctcaaac aaataaagga cgtcgcggag gagtttaacg aaagggaccg acagtaccaa       300
     aaaattcaaa attcacaaag ccataagcgt tggatgaaaa ctcccatcgc gcacggccaa       360
     ataactgaat ctaggcacta caagctaaca ttgtggcctg gtacaaacaa acaaaaagag       420
     gtgctgcaaa ctgtatccaa atttagatac gaacagccaa aacgtttagc tgctaaatat       480
     caagcagcat tagcaaagat ttaaacaatc ttaaactaaa ataaattatc ggttcccttt       540
     aaacaccaat atccgagata ataagaacaa aataaataca tcgacattca ataagtcgac       600
     agaataaaag actccggtct tcacttctcg ggaggaataa agactccggt ctacttcaag       660
     gggaagaata aacaaaaaaa aaaaaataaa taaaagaata accgagggtc aaaagagcct       720
     tacggaacaa attaaattcg gggtcaaaag agccttacga ataaccgagg gtcaaaagag       780
     ccttacggaa caaatcaaat tcggggtcaa aagagcctta cgaataaccg agggtcaaaa       840
     gagccttacg gaacaaatta aattcggggt caaaagagcc ttacgaataa ccgagggtca       900
     aaagagcctt acggaacaaa ttaaattcgg ggtcaaaaga gccttacgaa taaccgaggg       960
     tcaaaagagc cttacggaac aaattaaatt cggggtcaaa agagccttac gaataaccga      1020
     gggtcaaaag agccttacgg aacaaattaa attcggggtc aaaagagcct tacgaataac      1080
     cgaaggccaa aagttcgcct tacggagaca aagcttaaaa gctaacaaat aacaaaaaaa      1140
     aaaataaaat aaaagggtga ccaccacaag acgactcaag tcgcagtcat gatacgaaat      1200
     aagaaattcg tcgtcaatga caatgggcat tgccgattgt gcaccagccc agatggagat      1260
     gacagcatgg tcgcatgtga tcaatgtgac cactggttcc atcaacaatg tactggttta      1320
     aaaaatctac caaaacctac tgagagatgg ttatgtattc aatgcagtga atacgaagac      1380
     gtcatgactg ccatgacaag caaaatgaat caaatgaaaa tggaactaga tgagagagcc      1440
     aaggcccata gaaggtctga ggttcattct agttccttgg agctcgaact tgaaaaatat      1500
     aaggaagagc tcctaaaggc taagaaggag gaagattcta agcaagatgt gcttaaaggg      1560
     cttgcagatg tgctgcaacg ctcaaaatca agatcggatg aatccttaga tgacaataga      1620
     gtctcagaag gaaaagtact atcagtactg atgagaaggc aactccaatc gttgccaacc      1680
     ttctctggca ttgccagaga atggccaatt tataagcgac gcttcctaga aacaactgaa      1740
     tcgggggaat actctgattc agagaatcta attcgcttgc agcaatccct aagcggagct      1800
     gcagcaagaa gtgtacaagc tttaatgctt gatccttcta acgtccaaca gatcttggac      1860
     agactagaac gccaatttgg gcagttccaa aagatatata aagaactgag ggatgacatc      1920
     gatcgtgtca agcttagtgg tttacatacc ataattgaca tgtccgatgc ccttgagaat      1980
     ttggtttctc atttggaagc aatgaaaaaa ccagaatatc taagagatcc acgaatgacg      2040
     gaagatatcg tctcaaaact tccgtatgaa atgcaaatta agtggttgga aacaactagt      2100
     tccaacaatt ccggggtgag gacgctaaga gatttgctca acttcataaa accacgagca      2160
     gacgtcctaa gggaaatggg tcgtgctctc ccggaaagac gaaatcgcgt aaatctgcac      2220
     caagaagcag taaagcgatg cttcgtatgc gatagagggc atcaaataaa atattgctct      2280
     aaatttagag gaatggctgc tttagaaaga ttaagattag tacatgctaa cggaagatgc      2340
     caaatatgtc tacggaagca tgaagacagg tgccgtaact atgcaagttg cggaattaat      2400
     ggatgcagcg ggaagcatca ccctatgttg catctaaaag gatcgcctgg atactacagc      2460
     agacaatcaa aaaattctga ttcaacaaag aaaaaagacc agaccgaaat tgctcaaaca      2520
     aatttacatt atcaggttcc gtcacaggta ttttatcaaa tcattcctgt gactattaga      2580
     aacggaccgt atcagataaa aacctatgca tttttggatc ccggatcttc cttgacgttg      2640
     attgacagct atattgctga ccaacttaag ttggaaggaa taccagctcc acttaaaata      2700
     aaatggactc aaaacttctc aaaggaagaa aaacacagta ccagagttca atttgaactt      2760
     cagggtacaa gtggggagaa attttgtgta agggacgtaa ggacagtaga caatctacaa      2820
     ttacccgtcc aaacattaga ttaccaagaa atgagtagag attatcatca tttgagacgg      2880
     ctacctatta aaagcttcaa aagagctcag ccgaaactac tcattggctt gaaccaaagc      2940
     cacttgttgt tgccgatcga tagaaaatac gacggcccaa ataagccaat tgctattgag      3000
     acgccactgg gatggctgat cttcgggaat atcagtggag atatccatga agatcatata      3060
     atgataatcc aagaagaagg agaagacgaa gaaaatttgc gtaaaatgat gcaaaattat      3120
     ttttcagtcg aagattttgg ggtaaaggta ccagaagtcc taccagaatc taaggaaata      3180
     acgcgtgcta aggaaattat agacaaaacc cttaagtacg atggtaatcg atatgaaata      3240
     ggcttgctct ggagggaaga taatacagta cttcccgaga gctacacgca ggcatttaag      3300
     cgtctgatga atgaagaaac tcggttcaag aataaggaag atgtaaaggt gtggatgaat      3360
     gccactatta aagaatactt ggacaaggga tacattcgta aactatcaca ggaggaacta      3420
     gaagcgtggg aaaaagaaat atactatttg ccacacttca ttgtgtacaa taaaaataag      3480
     gttcctccta agcctcgtct ggtatttgac gcagcggcca aaaataaagg agtttctttg      3540
     aattcggttt tactagccgg gccagatgct acaacatcat cctttggagt aaccactcgg      3600
     ttcagagaag gaaaatatgc tacggctggg gacattaagg aaatgttttg tcaaattaaa      3660
     ataaacaccg aagatcaaaa gaaacaatgc ttcttattca gggatttcga tatgacccga      3720
     aaacctgacg tatataccat gcaggtaatg acattcgggg caacatgctc acctgcatgt      3780
     gctcagattg tcaagaacca taacgccgag cagtttaaag aaataaagcc taaagcagcc      3840
     aaggcgatta aaacccaaca ttacgtggat gattatattg atagtttcaa tacggtagaa      3900
     gaagctatag gaacaataaa ggatgtaaca gaaatccatc aacaggcagg tttttacatt      3960
     aggaattttg tttccaatga taagaacatc ctagccgcac tgcctcaaga aagagtgcag      4020
     caaaatccac taaaacaatt agaggataaa gatacgttaa atgaaaaggt cctaggagta      4080
     tattggaaca cggcttcaga cagcataggt ttcgaactgc gtttcaatag attacccgaa      4140
     gccgtaacca aaggcgtaag gccaccaact atgagagagg tattatcatt cgtaatgagt      4200
     atttacgacc caatgggatt aatatctcac cttaccattc atggaaaaat attaatgcaa      4260
     aaattgcata ccgaaatgac agattgggat gaggaactat cccctcaatc tcaacaacaa      4320
     tggaaccaat ggcttacgaa tatagctcaa gctaaggata taagaatacc tcggtggata      4380
     ttatgtaatc aagcaaaaac gtttgaacta catgtattcg tagatgcatc tgagtatgca      4440
     tttgctacaa ccatatatac cagaggcgta ggagcgtacg gacaaaccgt gagcgtaaaa      4500
     ctggtaacag caaaggctaa agtagctccc gtacgaaaat tatctatccc acgcttagaa      4560
     ttgcaggcag cggttctagg tgctagatta gcacaaacaa tccaagaaga attacgcata      4620
     gttccaagca gaactactta ctggtcagat tcacaaacag tcctatcatg gattcactcc      4680
     gaccatagaa aatataagca attcgtggct catcgtgtgg gcgaaatact agatgtaaca      4740
     aaaacagacc agtggcgtta tgtacccact gggcaaaacc cagctgatga aggaacaaag      4800
     gaagtaaagg ggaaatcaaa atggttaaca ggaccatcct ttctgtggaa tgaagaaaag      4860
     gaatggccca aatcaaaatt taactcgaac actctggaag aaataaagga tgtaatgttg      4920
     gtacatgact atgatcataa gtcattcgat tatataaacg aatggcgcta ctccaattgg      4980
     aataaattgg taaaaaatat cacatatata aagaaattta ccgattggat aaagaacaag      5040
     caaagttttg atcgaatcat tgcctatcac gatagaatga tggccgaata cgcaataata      5100
     cgaaaggctc aatgggaatc atataaaagt gagatgaacg atctcacgaa aaattgtgat      5160
     ctgacgattt caagtaatat tgctaccttg ataccaatgt tagatgagta tggagtaatg      5220
     agagcgagaa gtcgattgca aaacgcaatt gctataccgc gctcggctcg aatgcctata      5280
     atattaccca ataaacacta catatcaaaa ttgatagtga aaaattacca tgaacgatat      5340
     cttcatcaag gagataatgt cgtacttgga gcaattcgtc aaaaatattg ggtaataaag      5400
     gcaagggcat tgctgaagaa gattaaaaga gaatgccaat attgcaaaaa caaacgagct      5460
     gcaccagtag caccgcaaat ggcacctctg cctccatgtc gtacggcaat gtatgcgtat      5520
     ccatttacac atactggggt cgattacttt ggaccaatag aagtccaagt aaaacgttcc      5580
     atagaaaaac gatggggcgt gatatttaca tgcatgtcca ctagggcaac ccatgttgaa      5640
     ttagccgaaa gactggatac tgatgctttc ctcgtatgtc tgaagaattt ccagaatcgt      5700
     agaggaaagg ttcagcatct ttacagtgac aacggtacga acttcattgg ggccgaaaaa      5760
     gaaatgaagg ccgccataaa tgaaatagac aagaagttcg gcgggagcat tgcagcggca      5820
     atggaaataa attggacgtt taatccaccc gcagctccac attttggagg ggcctgggaa      5880
     agattaatcc aatcaataaa gaaatgctta aaagcaatgc cagagtgtac tcaaatgcgt      5940
     aagcctacta tagaagaatt aagatctgct ctcatccaag cagaattcat attaaattct      6000
     aggccgttga cacacatttc attagacaac gaggacgagg aacctctaac cccttttcat      6060
     tttctgatag gaagggccgg cgaatatgcg cctccctatt ctattcccac cggatgtctg      6120
     actaaaaaac aatatgagag aataaaccta tactctcaac atttttggga aaggtggcaa      6180
     aaggaatatt tgccaacctt gttgaaacgg aacaagtgga cgaagaaagt tgagccacta      6240
     aaggaaggag acgttgtatt aataactgat aaggaaacac atcctggaaa gtggctcaaa      6300
     ggaagaatag ttgaggtaag acgggcagcc gatggacaag ttcgatccgc ccaagtcaaa      6360
     actaatcagg gaatttattc tagaccagct acaaagatag cggtcttaga cgtcatgaga      6420
     aaagaagacg ataggaagga agaacccaaa gcttccatta atcatgtgaa ggaaatatct      6480
     accaaggaac atggccaaat taacaagcca aagcctaagc tacaacctcc aaaaacgaac      6540
     gacaaaactc aacttccaat acaagccaag aggatcaaac atcctaaaat aaaagacata      6600
     tgcatcgtga atcatcatcg cgaagtacat gcccaccagg agatggaatt gccgacttct      6660
     tcgaaggcaa ctaggaaaag aaagcttaca gaattagaat gggctaaaaa tttacaacaa      6720
     aataaaatac ttaatccaga aaagataatg aaaaccacgg aaccggaacc ttcccaagga      6780
     agcgcgaaat caaacttcga ttcctgggga aagcggcgta aacttgatgt tgacaagata      6840
     aaagaaatgc gcgaccgttg gaatgacaaa gcaagtgagg aaaagagcag ccagcgatta      6900
     cagaaaagcg aatctcaaac aaggaaaatt agattttcat caggaggagc ccttaaggca      6960
     ttaatgatgt tattttgcat agggaccgtt ttcgcatcgg agccctcagg attaatcgcc      7020
     tatgactgcg ccaatcctga tataaacatg accagttatt cattattaga tgtagattct      7080
     tgcataccca ccgtcaaaaa tctcactacc actgaagtac ctattcaagt gcttcagaga      7140
     agcgcaaaaa gtagcgccat ggtatatcag tgcaaggtta taatcaaacg cattgttaag      7200
     cattgtggaa tacactctca tacatctgat tatgagagaa ggtacgccta tatagtgagg      7260
     gaatttacac ctgaagaatg tagacgaata catttacttg ggaccctccc actaacggtg      7320
     aatgctggac ttagcgaact gaaacgaaat catacaacta gaggtgaaac tctagtagtt      7380
     ggaagtgttt ggtcgagtca ctgtagcggt ggagtatata aaactcctga atatacatgg      7440
     ctagatgctt tagtatattt tgaatacgac gtttcattgt acaattatgt agctacagta      7500
     gaccatgaaa atgatcaaat acttttacga catggaatag tatgtccata ctcgcatgga      7560
     aaatgtttgg attccgaaga tgggtattca acttgggaag taagtcttga tcggcggtgt      7620
     gaggacaccg aatttgaggt catttacgaa ggtacagtaa acaagacgac aaatgaggat      7680
     ggtgaaaaga agagtaacca ggcagtatat acagccattt cagattcgca cctattttca      7740
     attcgaacaa aacaagcaac tcagatttgt ggttacaaag gacatgctac tgatcacccc      7800
     agaatattta ttttggagtc atcatcgttt aaatcacctt ttagtcgcag accagcaagt      7860
     gtaagaaatt atgatttatt cacgtatttt aattctaaaa taacgttagt agaaaattat      7920
     attgggaaaa gattggatga tgtatacagg accgtaatga cggaaatgtg caaattagat      7980
     aaagctttgt tagagacgaa attaacatta gcaagaataa atcccatgga attcgttacg      8040
     agtataatgc gtcgttccgg attttcggca gttgtggcag gcgaagttct tcacgtatta      8100
     cagtgtaaac ctgtatacgt acaacctttt gcatcagaac gatgctatca ggagcttcca      8160
     gtaaaatacg gaaatgacac aatgttttta actcctgtta ccagaacgtt gcagatgagg      8220
     ggaacagaaa tagaatgcac tccacttctt cccgctaaat ttcaatttgg gggaagatgg      8280
     tataccttcg atggtaaaat aagagaaacg attcctcctc agaagcttgc aacagaaatt      8340
     gtcactaaat ggcgctacac accattacca aatttaatgg aaagtggcat ttatgatcag      8400
     gaaagcatcc aaaagatgcg taccatgatt tacgatcaag gagatcgtcg gatagcatct      8460
     aatgtggttc ataagatgct gactggacaa agcccaaatc gacaagggtt ccatttcgaa      8520
     gccttagtct cggaaaagat aattgataac gttatcaata agtattggaa taaaattatt      8580
     tcattgtcta ctgcgttagg gaactttaca tcgacaatga ttggattata tttactcggt      8640
     agatgcatca aattcttaat tgatacaatc atgcatggtc gtatactcta cgacatttat      8700
     gggtttggat ggcaactcat tgcctcattt tgggattcta tgacgtcatt tttatctcac      8760
     cgaaatactt tgaggaatat taacaggaag aagcatgagg tggcgggcac cgagctggag      8820
     gagatccgtg tgacgctgct acccgagagt caacagacgt cccaacctga aatccgaaaa      8880
     ccaaccaaac tgaagaaatc aattgtcaac ccgaaacaag gcaacccaac aacaagccaa      8940
     gatgacaaga ccgaagataa accctaagat gaaggatcat tccgatccta ctgaagttat      9000
     aatccgaaaa gacgactagg ggtcaaaccg acccttagaa cagaagaaat caatcaaacc      9060
     aggggctcaa gctattacta tcgcagcctc attagttacc tatcaacacg gctgagggct      9120
     aaccagcttt gccgaaatat cacaacccaa agataacacc aactcagcga caagtcacaa      9180
     tcaacacggc tgagggccaa ccaacctcgc caaatatcaa tactgaggac cagccggtct      9240
     cagatctaca agtaaagggc accccagtct taacaattgc tgaaagatag caatctacac      9300
     ctgagggcta acccggccaa gctcaatcac tacaaccggc aacagacaac aaatcaacat      9360
     ggagagtcaa ccgaagtagg aataagaagt gacaaacaat taaaacgtta taaaaataaa      9420
     cacatataat attaatgaat ttatacaatt attacaatta ttataaacat ttatatgcag      9480
     caatgcaaca tattacccat acaaaacata tatacaattt ataaaaatta tatgaaagaa      9540
     tcaaaaatca tgcaatcatg caattaaaaa aaaaaactta tacatgtcaa gtacattaag      9600
     atattcatta ttgaacattt tatacaaaca ttatatgggt aaatacggag atggaccaat      9660
     taaaaaagaa gaagaaaaga acacaagtac aaattgatat caatgcaaaa taagaggaag      9720
     tagtaattaa acatacagag aggaacgaac acaaataaac aaacaaacaa acggcacgat      9780
     taaagaaaat gtaaatggat tcttgaaaat tatgcaacta cttagactag gtaaaggatt      9840
     ctacgattct ttacggctga gggaa                                            9865
//
ID   BEL-279_AA-LTR repbase;    DNA;    INV; 1478 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-279_AA_;
KW   BEL-279_AA-LTR; BEL-279_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1478
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1478
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2567-2567 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1478 BP; 469 A; 314 C; 334 G; 361 T; 0 other;
     tgtcactgac gcggtagttt tataatttac agattcaatt attggcaaat tagcaaattg        60
     aaattgattc cgatcgacct ccagtcggtc aataacctag gaaacagaaa acaaacccga       120
     cccaacatat gggcaacgat agaagtgcat tgacatcaaa cctgactctg gagaaagata       180
     gaaagacaga ggcaggaaaa ggttccatct caaaattttc cgaactagct atttgacacc       240
     gtaagtacgc cagtcttaga caaaagcagc acccgcgcga agaaaggaat aataataacc       300
     aaaaacgaat gcacgttagc ttatctgtac gcaccctgaa tgtagtactg cagctcggac       360
     ggatgcaccg atcaatgcgc gtgggaatag tattgacgag gcgggcggat aagcgcaaga       420
     gaaaaagaca caaatagaaa ggtcgtaaat tgcgacgata attacccttt gtcaagaagg       480
     cgaagatgtc tccctttagg tggtaagtca acttaccaga aagaagttga gcaatgtgga       540
     aaaatccacc attctcgctt tgcttaggtt ctacggaacc ggcagcgata accaaaaggc       600
     ccctagggac gatcgccgac aagataataa aaatcccaaa acaaatccaa gggaatgaaa       660
     atgcgcagcc gtctcatagc gagggaggtc tgatagcgct aggattggtg cacctcgaag       720
     ttgattattt tgagctggca tgcatttgtc gcgtatggac tggattaggt cccgggtttg       780
     gaaaagtaat aaaaatcgac tgtacttgcg cgtgtgaggt agcatgggag ggaaaataga       840
     ataatttagt ttgataagta agaattctag catctctttt tcactttaga gttaagtttg       900
     ggtagccaga cccaaggcct ctatataagc ggaatgaagc tagaaaaata caggattgtc       960
     ttttgaatac tcgatgcgac cagtcgatta acttgaaaga aatcttctct cctcttcttt      1020
     tcctttctta aagtttgaat tctataaggt tctgaagacg gaccataggc cgctccccta      1080
     atcatagcgg tactaggccc ttcccaacct tatttgaagg cagaacttaa tctttaacgt      1140
     gttggaattc tcctagctta tgccaggtga tatgccaata ctgcaaagac aaagggaaat      1200
     aattgaccac ctgaatcaag tctcaaccct gaatcaatct tctgaagacg gaacataggc      1260
     cgctccccta atcatagcgg tactaggccc ttcccaagtt tgattcaagt gagagatcac      1320
     aacatcagct agacacgttt ggttgatgat agattcacta cacaatttca catcgacact      1380
     gtcgcaccga agagttcaaa ccttcgcgga acgtaacatc gggttacgga ttaactcggt      1440
     gtgcttcggg tcggaagctt aggcttcagt gcgcgaca                              1478
//
ID   BEL-27_AA-I repbase;    DNA;    INV; 5600 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_AA_;
KW   BEL-27_AA-LTR; BEL-27_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5600
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions  140251  145850.
XX
CC   Positions [4439-5041] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..5383
FT                 /product="BEL-27_AA-I_1p"
FT                 /translation="MEDLVKKRNVAFERLRRIHASVKQLAEREPPAFEVHD
FT                 RLRKLADMEESFDRIQAEIEEEVPAEELSSVLSVRSDYEQLFYITKGMITK
FT                 LLQIPDDHSIGANSEKTVVEPKSELKEAVRVLLETQRTLLSSQATASSNME
FT                 ELAEQLRQQKTEPLDTQLPSYNLPVFRGDRKQWASFRDLFVSSVNNKNLTS
FT                 ALKLQILMSHLEGDAKSLVSSYSITDANYTQVWDTLVEHFDKPKFTVAALV
FT                 QEFCDQPAVKGSNLASLRKLVSTSDEVIRQLSALGPNFETRDPWLNYIVLK
FT                 KLDEGLRSQWSQHIVDNDDPTFDDLLKFLKRKCEALETCAAFGGKPLDYGK
FT                 KDFQRDDRKQNVIKKEIKSFNAVQQQSCPICAASHRIYECTVFKEATINER
FT                 RERVQQAKLCFNCLRPNHCVKSCPSKSVCRTPNCQQHHHTMLCRASCESPT
FT                 IAPQEKQVLSSPAQKPDSAAVEIKPALSCTTNVNNKSSSVVIGLLPTALVR
FT                 VKGNNGQWNEVRVMIDSGSQASLITEHCVTSIGLQRSNANLIVTGIASCSS
FT                 ETTRGAVELEISSRFCYNPVVRVKAYVLSKFPRIVPNQRLDRERLKCLEPL
FT                 QLADPDFDKPGQVDLILGADVFLAILEDGKVKDETGLPVAINSSFGWIVAG
FT                 QVFDASEVNCNTAIISLSMDMDIDKALQKFWEVEEVNRPKPLTQEEQQAVD
FT                 FFNSTHQRDEHGRFNVRLPFVEGKPPLGESLPPAVQRLKAMERRFARDPDF
FT                 KQLYGDFMAEYLSLGHMERVPDDEVNIEPEKRFYLPHHGVMRQDSVTTKLR
FT                 VVFDGSCQSSSGISLNEKLLIGPKVTEDLPIVLTRFRSYAFAFMADAEKMY
FT                 RQVRIHRGDVDYQRIVWRTDPDKPIEHYRLLTVTYGTSCAPFLAIESLRQA
FT                 ARDSCAQYPIASGRVQINFYVDDFLSGAATLEGALTLKKDIVRITSEAGFH
FT                 LRKWSANDPRLLEGNASAADTSVPVHLHPDADSVKALGIHWYPATDSFGYR
FT                 LNVNIDKPNTKRQLLSDSARLFDPLGWISPIIVRIKILYQTLWLQDLQWDD
FT                 PLPAAVNQEWNKIKQSLAAIEDIRIPRWIANHHGALQLHGIADASEAAYAA
FT                 VVYARTVDDEGNVCISLVASKTKVAPIQQVSLPRLELNAAVLLVELMKQIL
FT                 EAMDNLDVTCYAWTDSTVVLGWLTSHPKKWKTFVANRTSAILDFLPRSSWN
FT                 HISSGENPADCASRGLLPTELVDHELWWTGPSLLHDHEDIWKVRAEAVQYE
FT                 EDTTEQRKVAAAASVAVKPVSDYEIEECLLKRNTSLKFSQREVAWINRFKV
FT                 NLLAKLRGTQKISGPLTTSEVHAANLQLARFAQHEVFGKDMELLRKGQPLS
FT                 PKSQIKSLFPFIDGDGTLRVGGRLQNSDQPFHMKHPVVLPKSHRYTYLLIS
FT                 MLHHQNLHAGPTLLIATLNQHYWVIGCQSVVRSVVNSCVRCTRWKAKTSNQ
FT                 LMGSLPAVRTVSSRAFEIVGVDYAGPVTIKASLLRSTKTVKGYIAVFVCLA
FT                 TKAVHLEAATDLSANTFISALKRFCARRGLPNQLWSDNGTNFVGADRQLKE
FT                 LLASAAFNSEVDQYLNSLGIQWNFITPSAPHMGGLWEGAVKSMKKHLRVVL
FT                 GTTVLNFEELTTVLTQIEACLNSRPLCTLSSSVDSCEALTPGHFIIGQPLN
FT                 LVPEPDASGIPMNRLDRYRLLRKITEDFWERFRTEYIATLQPRTKWQNIES
FT                 NLKDGNLVLVKNENTPPAYWELARVVATHPDRSGIVRNVSLKRGQTIYQRP
FT                 IHKLVILPTD"
XX
SQ   Sequence 5600 BP; 1535 A; 1324 C; 1429 G; 1312 T; 0 other;
     tattggtcct tcgccaccgg atcggcgtga atcggcgaca atggaggatc tcgtcaagaa        60
     gagaaacgtg gccttcgaga ggctgagaag aatacatgcg agtgtgaagc agttggcgga       120
     gcgagaaccg ccggcgttcg aagttcacga tcggctccgg aagctagccg acatggagga       180
     aagtttcgac aggattcagg ctgaaatcga ggaagaggtt ccggcggagg aactttcatc       240
     ggtactcagc gtacgttcgg actacgaaca actcttctac ataacgaagg ggatgatcac       300
     gaagttgctg caaatcccgg acgaccattc aatcggtgca aacagtgaaa aaacagtggt       360
     ggaacccaag agcgagctaa aggaggcggt ccgtgtactg ctcgaaacgc aacgaaccct       420
     cctttccagc caggcgacag catcgagtaa catggaggaa ttggcagagc agcttcgtca       480
     acagaaaaca gaacccttgg atacgcaatt gccatcgtac aacttgcccg tattccgagg       540
     tgacaggaag cagtgggctt cttttagaga tctgttcgtc agcagtgtca acaacaagaa       600
     cctaaccagt gctctaaagc tgcaaatact gatgtcccac ctggaaggag acgctaaaag       660
     cctggtaagc agttactcta tcaccgatgc aaactatacg caggtttggg atacactcgt       720
     tgagcatttt gacaaaccaa agttcacggt tgccgccttg gttcaagagt tctgcgacca       780
     accagcggta aagggttcga atctcgccag tttgcgtaaa ctagtgtcca catcggatga       840
     agtgattcgt caactcagcg ctttgggtcc aaacttcgaa acgagagatc cttggctgaa       900
     ctacatcgtt ttgaaaaagt tggatgaagg tctacgatca cagtggtcac agcacattgt       960
     ggataacgac gatccgacgt tcgacgatct gctcaagttc ttaaaaagga agtgtgaagc      1020
     attggagact tgtgcagcgt tcggaggaaa acccttggat tacggtaaga aggattttca      1080
     acgagatgat cggaagcaaa acgtcatcaa aaaggaaatc aagtcattca acgcagtaca      1140
     acagcagtcg tgtccgattt gtgctgccag tcacaggatt tatgagtgca ccgttttcaa      1200
     ggaggctacc atcaacgaaa ggcgagaaag agtgcaacaa gccaagctgt gtttcaattg      1260
     tttgagaccg aatcattgcg tcaaatcctg cccgtcaaaa tcggtgtgcc gaacgccaaa      1320
     ctgtcaacaa catcaccata cgatgctgtg cagagcaagt tgtgagtcgc cgacaatcgc      1380
     accgcaggaa aaacaagttt tgtcttcgcc ggcacagaag ccggattctg cagcagttga      1440
     aatcaagcca gctctgtcat gcacaacgaa tgtcaacaac aagagttctt cggttgtcat      1500
     tgggctgcta ccgacggctt tggtgcgagt gaagggaaat aacggccagt ggaacgaagt      1560
     gagagtgatg attgatagtg gttcccaagc ctccttaatc acggaacact gcgtgaccag      1620
     catcggactg caacgaagca acgccaatct gattgtcacc ggcatcgcaa gttgttcgtc      1680
     ggaaaccacc agaggagccg ttgagttaga aatttcttct cgtttttgct acaatccagt      1740
     ggtcagagta aaagcatatg tgctctccaa atttcctcga attgttccaa accaacgatt      1800
     ggatcgggaa cgcctgaagt gtttggaacc gctacagctg gcggaccctg atttcgataa      1860
     gcccggtcaa gtggatttga ttcttggagc tgatgttttc ttggctatat tggaggacgg      1920
     caaggtgaag gatgaaactg gacttcctgt ggcgatcaac tcttcttttg gatggatcgt      1980
     cgccggtcaa gttttcgacg ctagcgaagt gaattgcaac acagccatca tcagtctcag      2040
     catggatatg gatatcgaca aggcgctcca aaaattttgg gaagtagaag aggtcaaccg      2100
     accgaaacct ttgacacagg aggagcagca agctgtggat ttcttcaact caacgcatca      2160
     acgagatgaa cacgggcgtt tcaacgtacg tctaccgttc gtcgaaggca agcctcctct      2220
     gggcgaatca ctgccacctg cagtgcaacg attgaaggca atggaacgaa gattcgcaag      2280
     agatcctgat ttcaagcaat tgtatgggga cttcatggct gagtatttga gtcttggcca      2340
     catggagcgg gttccagacg acgaggtgaa cattgaaccg gagaagcggt tctatcttcc      2400
     acatcacgga gtcatgcggc aggatagtgt cacaaccaaa ttgagggtcg tgtttgacgg      2460
     ctcttgccaa tcgtcgagtg gaatttcatt aaatgaaaaa ctattgatcg gaccgaaggt      2520
     caccgaggac ctgccaatcg tactcacccg tttccgcagt tacgccttcg ccttcatggc      2580
     ggatgcggaa aaaatgtacc gacaggtgag gattcatcgg ggcgacgtcg actaccagcg      2640
     tattgtatgg agaacggacc cggacaagcc tatcgaacat tatcggttgc tgacggtaac      2700
     ctacgggaca tcttgcgcac ccttcctggc catcgaatcg ctacgacaag cagctcggga      2760
     ttcgtgtgcg cagtatccaa ttgcttccgg acgcgtacag ataaactttt atgtggatga      2820
     ttttttatct ggcgctgcga cattggaagg agcacttacg ttgaagaagg acatcgttcg      2880
     gattacatct gaggccggtt tccatctccg gaaatggtca gcaaatgatc cacgactgtt      2940
     ggagggaaac gcaagcgctg ccgatacatc agttcccgtt catcttcatc cagatgcgga      3000
     ttcggtaaaa gcactgggta tacattggta cccagccaca gattcgtttg gatatcggtt      3060
     gaatgtcaac atcgacaagc ccaacacgaa gcgtcaactt ctatccgatt cggcccggct      3120
     cttcgatccg ttgggttgga tttcaccaat aatagtgcgc atcaagattc tgtaccaaac      3180
     attgtggttg caggacctgc aatgggacga cccactccca gcagctgtga atcaggagtg      3240
     gaacaaaatc aagcaaagtt tggcagcaat cgaggatatc cgtattccaa ggtggatcgc      3300
     gaatcatcac ggagcattac aactgcatgg aattgctgac gcgtctgaag cagcttatgc      3360
     agcagtcgtg tacgctagaa ccgtggacga tgaaggtaat gtgtgcattt cgctggttgc      3420
     aagcaaaacc aaagttgccc ctattcagca agtttcgctt ccccgtctcg agttgaacgc      3480
     cgccgttctt ctagtggagc ttatgaaaca gattctcgag gctatggaca acttggatgt      3540
     tacatgctat gcatggacag attctaccgt tgtgcttgga tggctgacat cgcacccgaa      3600
     gaaatggaag acgtttgtcg ccaatcggac gtcggcgata ctggatttct tgccacgaag      3660
     ctcttggaac cacatttcat cgggcgagaa tccagccgat tgtgcatcta gaggtttgct      3720
     gccaacggag ttggttgacc acgaattgtg gtggactggt ccatcgcttt tacacgacca      3780
     tgaagatatc tggaaggtaa gagcagaagc agtacaatat gaagaagaca ccacggagca      3840
     gagaaaagtt gctgctgctg cttcggtagc tgtcaagccc gtatcggact acgaaatcga      3900
     agaatgtctc ctgaaacgaa acacgtcgtt gaagttttcc caacgagaag tggcgtggat      3960
     caacagattc aaggtcaact tactagcaaa gctgcgagga acccaaaaga tttctggacc      4020
     actgacgaca tcagaagttc acgctgccaa tctacaattg gcacgttttg ctcaacacga      4080
     ggtgttcgga aaggacatgg aactgcttcg aaaagggcaa ccactttcac cgaagagcca      4140
     aatcaaatcg cttttcccgt ttatcgatgg agatggaaca ttgcgtgttg gaggtaggtt      4200
     gcagaactcc gatcagcctt ttcacatgaa gcatccggtt gtacttccca agtcacatcg      4260
     ctatacgtat ctgttgattt caatgttgca ccatcaaaat ctgcacgctg gtccaacttt      4320
     gcttatcgcg acgctgaacc aacactactg ggtaattggc tgccaatccg tggtgcgatc      4380
     ggtggtgaat agctgtgtcc gctgtacacg ttggaaagcc aaaacttcga atcagctgat      4440
     ggggagtttg cctgcagtgc gaaccgttag tagccgagct tttgaaatcg ttggcgttga      4500
     ctatgctgga cctgtcacaa ttaaagccag cttactgcga tccacaaaaa ccgtaaaagg      4560
     ctacattgca gtttttgtgt gtctagcaac aaaagctgtc catttggagg cggcaacgga      4620
     tctgtcagca aacacattca tctcagcttt gaaacgcttc tgtgcccgcc gtggtttgcc      4680
     caatcaattg tggtctgaca acggcacaaa ttttgttggc gccgaccgcc aactcaagga      4740
     gcttctagca tcagctgcgt tcaactccga agtggatcag tacctaaaca gtttgggaat      4800
     acaatggaac tttattacgc catccgcccc ccacatgggc ggtctttggg aaggcgcggt      4860
     aaagagcatg aagaaacatc tacgcgtggt gctaggaacc accgtgttga acttcgaaga      4920
     actcacgact gttttaacgc aaattgaagc atgcttgaat tcacgaccgt tgtgcacact      4980
     atcgagctct gtggattcct gcgaagcttt gacccccgga cacttcatca tcggccagcc      5040
     gttgaatcta gtgccagaac cggatgcatc cggtatacct atgaatcgcc tcgatagata      5100
     tcgcctgcta cggaagatca ccgaagattt ttgggaacgc ttcaggacgg aatacatcgc      5160
     cacgcttcaa ccccggacaa aatggcaaaa catcgagagc aatcttaaag acggaaacct      5220
     tgttctggtg aagaatgaga acacaccacc ggcatactgg gaacttgcac gagtggtagc      5280
     tacgcatccc gatcgaagcg gaattgttcg gaacgtgagc cttaagcgag gccaaaccat      5340
     ctaccaacga ccaatacaca agttggtgat tcttcctact gattgacgca tgcgcctcaa      5400
     ggccgggagg atgttcggga ttatcgttgc accagagttc aaccctgtca ggaaaagttt      5460
     caagaaaatt ggagcaagag agaaaatatc aagagcagga actttacctg tctccctaac      5520
     atgtgtactc tttgacaatg tcagttttca ttattctttc gtctgtaata aagcgagtta      5580
     gagcagacat tttgttcttg                                                  5600
//
ID   BEL-27_AA-LTR repbase;    DNA;    INV; 111 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_AA_;
KW   BEL-27_AA-I; BEL-27_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-111
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions  140140  140250.
XX
SQ   Sequence 111 BP; 20 A; 25 C; 24 G; 42 T; 0 other;
     tgactgtatt tcaattcggt gacggaaatt cggttttttc gttatagaac ttcgcgtcag        60
     ttctcggtcg tcgtgttttg tccacttccg catcattttg gtcgccaaac a                111
//
ID   BEL-27_AnFu-I repbase;    DNA;    INV; 5594 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5594
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 678-678 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..5547
FT                 /product="BEL-27_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MDKTDLSGSEKSRTMPTTRSQKSSSETGDVPEGASGS
FT                 DLWPVEMRQEEERREKEVFEERMKEMRRQLEERKARHDQELQLLKELHALQ
FT                 MKCDAEKKEQEEMFKQERTRLLHPHQQDDEQKSIPLNCEETQALLEGGDTA
FT                 VSTKTEQTIVPAGDGSGQSLSRLTKEQIATRKSISTKLPKFAGEAEVWPLF
FT                 ISSYTHTNEACGFTNLENLQRLQECLHGEALEAVRGRLLMPHSVPGVIAEL
FT                 KRRYGNPKRLLKMLLRKIRATEPPREKRLVTFVEFGTKVQQLCDHVEECGL
FT                 TEHISNPLLVDELVNKLPLQYQREWSRFEREQNDSSLLGFSRYISGLVDDI
FT                 SDVMERLEDDRNPTQEKKRVNVHATETSSTQRSESCWNCGEQTHRLKNCGS
FT                 FKQMPLSEKMKRIKNLQLCETCLARGCNGKCAYKVRCARCKGRHHTLLHRS
FT                 EESLHTSSTAEDVVVKRDTVVVFRMIPVTLYYGSMTLDVMAFIDEGSSVTL
FT                 LDDSAARHLNVSGVPEPLVISWTNDINRHENESRLVQLMISERGSGQKYEL
FT                 INTRTVSELKLPMPYVTIADLKCKYAHLTDISAKEYLPQRPMIILGLDNVH
FT                 LFAPIESRLGNVGEPIAVRSLLGWSIFGTERCSRMFSAYLNLHTASQMSNE
FT                 MLHDLIKEQYRLEDLDKTTHTMPEAADEQRARTLLESTSCRVGDRFETGLL
FT                 WKNDVRQFPDSYPMAEKRMQSLERKLNRQPQLKEVVLQQMEDYQQKGYAHK
FT                 INPNEMLVPGNSVWYIPLNVVQNPKKPGKVRLVWDAAASVKGVSLNSELLK
FT                 GPDMLIPLPNIISNFREKAIAFGADIKEMYHQIRIRDADKQAQRFLFGYDS
FT                 SGRPQVYVMDVATFGATCSPSSAQYIKNLNAAQHQHEYPEAAEAIIKRHYV
FT                 DDYFDCTDTVEEAVSLAEQVKYVHSKGGFHIRNWVSNSTEVLSALKEDNAE
FT                 DRIRFKGENTASTERVLGISWLANEDVFCLNSENNDNALLTDLQESQPSKR
FT                 KVLSFIMGHFDPMGFFAPITVRGKMLMQDIWRTGCNWDEPIEATCYERWCQ
FT                 MIQNMQNVGLLKIPRSYFGKALSSEIKDVQLHVFTDASETAFGCVAYFRAV
FT                 VQGEVRCSLVMSRTKVAPLKKISIPRLELLGAVLGARMAKTIRDNHKLAID
FT                 RVVIWTDAKVVLSWIRSDHRRYKQFVGFRVGEILDLTNISDWRWIPSKMNI
FT                 ADILTKWGKAPDIGPDSDWVCGPKFLRADECCWPVQELPPANTTEELRAHL
FT                 LIHNVELLKGFIDVRRFSKWTVLVRTVACVYRFIANCIKKAKGEPIETLRA
FT                 TVNQQKILMAVGLTTKRTPLQQPEYAKAEMVLIRTAQAESFIDEWKTLMKN
FT                 KESSSNQWIGLERSSPLFRLSPFIDENDLIRMEGRTEYAESLPYNMRFPII
FT                 LPSDHYITGLIIQHYHERYGHGYRETVKNELRQHYYIPHLDAAVRRETAKC
FT                 MWCKVRRNQPTTPRMAPLPPQRLTPNVRPFSYTGVDYIGPYEVSIGRRTEK
FT                 RWIVLFTCLVVRGIHLEIAHSLSTMSCMMALRRFICRRGWPIEFVSDNGTN
FT                 FKGASREIVGALRDIEEECADQLTNARTRWTFNPPVAPHMGGVWERLVRSV
FT                 KGVFDALQDGRKLTDEVLLTAIVEAEDIVNSRPLTTVTQLGSEEEALTPNH
FT                 FLRGSSKSDDRDIPMTCSKEALKDAYKRSQLLADRMWSRWVKEYTPTINQR
FT                 AKWFKETKPLKVGDLVYVVDGKDRKCWVRGKIEEIIVARDGRVRQAWVRTN
FT                 NGRFRRATNKLAVLEIE"
XX
SQ   Sequence 5594 BP; 1659 A; 1136 C; 1529 G; 1270 T; 0 other;
     attttcaaac gtaaagtcga catctccgga tccctaagat cgcgcgcttg tgtatgtgtg        60
     tgcaatttgg cgaccacgct agcagaacaa taggtgtttg cgagaatacg tggtaaaagc       120
     gacaaaagga cacgcgcgtg atatcgaaac tggaagtgtg ttcgtgtcgg tgtgaataag       180
     gtgatggaca aaactgatct ttcagggagt gaaaaaagcc gtaccatgcc aaccactaga       240
     tcgcaaaaaa gttcatccga aaccggagac gttccagaag gcgcaagcgg gtccgaccta       300
     tggcctgtcg agatgcggca ggaggaggaa cggcgtgaaa aggaagtctt cgaagagcgt       360
     atgaaggaga tgcgtaggca gttggaggaa cggaaagcgc gccatgatca ggagttacag       420
     ctccttaagg aactgcacgc actgcaaatg aaatgtgatg cagaaaagaa ggagcaggaa       480
     gagatgttca aacaggaacg aacgcgttta ctacacccac accaacagga cgacgaacaa       540
     aagagcattc cactaaactg tgaggaaacc caagccttgt tggagggagg ggatacagca       600
     gtttcgacaa agacggagca gacaattgtg ccggccggtg acgggtcggg gcaaagttta       660
     agcaggttga cgaaagaaca gatcgcaacg aggaagagca tttccacgaa actgccgaag       720
     ttcgccggtg aagccgaagt gtggccgttg tttattagta gctacacaca caccaacgaa       780
     gcatgcggtt tcaccaactt ggagaatcta cagcgtctcc aggagtgctt gcacggggaa       840
     gcgttggagg cagtgagagg acgtttgctg atgcctcatt cggttccagg cgtgatcgcg       900
     gaattgaagc gtcgatatgg aaacccaaaa cggctgttga aaatgctgct tcgaaaaatt       960
     cgggctaccg aacccccgcg agagaaacgc ttggtgacgt tcgtggaatt cgggacgaag      1020
     gtgcaacagc tatgcgatca cgtagaggaa tgcggtctaa ccgaacacat aagtaatcca      1080
     ctgctagttg acgaattggt gaacaaattg cctttgcagt accaaagaga gtggtctcgc      1140
     ttcgaacggg agcagaatga tagctcgttg ttgggatttt caaggtacat ttcaggattg      1200
     gtggatgata tttcggatgt aatggaacgc cttgaagacg accgtaatcc cacacaagag      1260
     aaaaaacggg tgaatgtaca cgctaccgaa acatcttcta ctcagagaag cgaatcttgc      1320
     tggaattgcg gagaacagac tcatcgactt aagaactgtg gaagtttcaa gcagatgcct      1380
     ttgagtgaaa aaatgaagcg gattaaaaat ctacagttgt gtgagacgtg cttagcaaga      1440
     ggctgcaacg ggaagtgcgc atacaaggtt agatgtgcaa gatgtaaagg tcgtcatcat      1500
     acactgctac ataggtctga agaatctttg cacaccagta gtacggcgga ggacgtcgtt      1560
     gtgaagcggg atacggtggt tgtattccga atgataccag tgacgcttta ctatggaagc      1620
     atgacgttag acgtgatggc gtttattgac gaagggtcgt cagtcacctt gctcgatgac      1680
     tcagccgcaa ggcacctgaa cgtgtcaggt gtgccggagc cgttggtgat cagctggact      1740
     aacgacatta accgtcacga aaacgagtcc cgcttggtgc aactgatgat atcggagcga      1800
     ggttcagggc agaagtacga gttgatcaac acacgcaccg tgtctgaatt gaaacttccc      1860
     atgccgtatg tgacaatcgc cgacctcaag tgtaagtacg cgcatcttac agacatttct      1920
     gcgaaggaat accttccaca gcggccaatg attattctgg gactagataa cgtacatttg      1980
     tttgctccca ttgagtctcg tttaggaaat gttggagagc ccatcgctgt acgatcgtta      2040
     ctaggttggt cgatattcgg aacggagaga tgctcgagaa tgttcagcgc gtatttgaat      2100
     ctacatacgg cttcacaaat gagtaatgaa atgttgcacg atctaataaa agagcagtac      2160
     aggctagaag atctagacaa gacgacgcat acgatgcctg aagcagcaga tgaacagcgc      2220
     gctagaaccc tgctcgaatc tacatcgtgt cgtgtgggtg accgtttcga aactggtctc      2280
     ctgtggaaga atgatgttcg ccaatttcct gacagctatc caatggctga aaaacgtatg      2340
     caatccttag agagaaagct gaataggcaa ccacagttga aggaggttgt gctacaacag      2400
     atggaggatt atcagcaaaa gggatatgca cataaaatca atccgaatga aatgctagta      2460
     ccaggtaaca gtgtgtggta tatcccgctt aatgtagtgc aaaacccaaa gaagccggga      2520
     aaggtacggc tagtatggga tgcagcggca tcagtgaaag gtgtatcact gaattcagaa      2580
     cttcttaaag ggccagatat gctgataccg cttccaaaca tcatcagcaa tttccgagaa      2640
     aaggcaatag ctttcggggc cgatatcaag gagatgtacc atcagatccg gattcgtgat      2700
     gctgacaaac aagcgcagcg gttccttttt ggctatgatt cgtcgggtcg accgcaagtc      2760
     tacgtcatgg atgttgcgac cttcggagca acgtgttcgc cgagttctgc acaatacata      2820
     aaaaacttga atgccgcaca acatcagcat gaataccctg aagcagctga agcgatcatc      2880
     aaacgtcact acgtagacga ttatttcgac tgtactgaca ccgttgaaga agctgtttca      2940
     ttggcagagc aagtgaaata tgtccattct aagggtggat ttcatatccg caattgggtg      3000
     tccaattcta cggaggtgtt gagcgctttg aaagaagaca acgcagaaga tcgaatacgc      3060
     ttcaagggag aaaataccgc atcaacagaa cgagtgcttg gcatatcctg gttagcaaat      3120
     gaagatgtat tttgcctcaa ttcggagaac aatgataatg cattgctaac agatctgcaa      3180
     gagtcgcaac cgtccaaaag aaaagtgctc agcttcataa tgggacattt cgatccaatg      3240
     ggcttcttcg caccgattac cgtgagagga aaaatgttga tgcaagatat ttggagaact      3300
     ggctgcaact gggacgaacc tatagaggcg acctgttacg aaaggtggtg tcagatgatt      3360
     cagaacatgc agaatgttgg tctgctgaag ataccacgta gctacttcgg gaaggcttta      3420
     tcgagcgaga taaaagatgt ccagttgcat gtattcacgg atgcaagtga aacggcgttc      3480
     ggatgtgtag cgtattttcg tgccgtggtt cagggtgaag taaggtgttc acttgtgatg      3540
     agccgcacca aggtggctcc gttgaagaag atctcgattc cacgcctcga acttcttgga      3600
     gcagtgctgg gagcacgaat ggcgaagaca atacgagaca accataaact ggcgattgac      3660
     agagtggtta tatggacaga tgccaaagtc gttttatcat ggatcagatc ggatcatcgt      3720
     cggtataaac agtttgttgg attccgtgta ggtgagatac tggatctcac taacatatct      3780
     gattggcgct ggattcctag caagatgaac atagctgaca ttctgacgaa atggggaaag      3840
     gctccagata taggaccaga tagtgattgg gtatgtggac cgaagtttct tcgagcggat      3900
     gaatgttgct ggcctgttca agagttacca cctgcgaaca ctactgagga gctaagagca      3960
     caccttctta tacacaatgt ggagctactg aaaggtttca tcgatgttag acgtttctcg      4020
     aagtggaccg tattggtgag aaccgtagct tgtgtataca gattcatagc gaattgcatc      4080
     aagaaagcta aaggagagcc gattgagacg ctacgtgcta cagtaaatca acagaagatc      4140
     ctgatggcag ttggtctaac cactaaacgt acccccctgc aacaacccga atatgcgaaa      4200
     gcggagatgg tgttaataag gacagctcaa gccgagagtt tcatcgatga gtggaagacc      4260
     ttaatgaaga acaaagagtc ttcgtcaaac caatggatcg gcctggaaag gagtagcccg      4320
     ctgtttagat tatctccttt catagatgag aatgatctaa ttcgcatgga agggaggacc      4380
     gaatatgcag aatcgcttcc ttacaacatg cgattcccca tcatcctgcc gagtgaccac      4440
     tacattactg gattgattat acaacactat cacgaacggt acggacacgg ttatcgagag      4500
     acggtaaaga acgaactacg tcagcactac tacattccgc atctggatgc agctgtacgc      4560
     agggagacgg cgaaatgcat gtggtgcaaa gttcgtcgta accaaccgac aacaccgaga      4620
     atggcacctc taccccctca acgtttgacg cctaacgtcc gaccgttcag ctatactggc      4680
     gttgattaca tcgggccgta cgaggtatca attgggcgga ggacggagaa aagatggatc      4740
     gtactattca cgtgcctggt tgtacgcggt atccacctgg aaatagcaca cagtctttca      4800
     acgatgtcgt gcatgatggc gttgcgtcgg ttcatctgtc ggcgaggctg gccgatagag      4860
     tttgtatcgg acaatggtac aaatttcaaa ggggcgagtc gcgaaatagt tggagcttta      4920
     cgagacatcg aagaggagtg tgcggaccag ctgacgaacg cgcggacaag gtggacgttt      4980
     aatccgccgg ttgcacccca tatggggggc gtgtgggagc ggcttgtaag atcagtaaag      5040
     ggtgttttcg atgcgttaca agacggtaga aaactaacag atgaggtgtt attaacagcg      5100
     atagttgagg ccgaagacat agtgaatagt cgacccttaa caaccgtaac acaactaggt      5160
     agcgaagaag aggctttaac acctaatcat tttttgagag ggtcgtccaa gagtgacgat      5220
     agggacattc ctatgacgtg ttcgaaagag gctctcaaag atgcatacaa aagatctcaa      5280
     cttctcgcgg ataggatgtg gtcaagatgg gttaaagaat atacgccaac gatcaatcaa      5340
     agagcgaagt ggtttaaaga gacgaaacct ctaaaggttg gggacttagt atatgttgta      5400
     gatgggaaag acaggaagtg ttgggttcgt ggtaaaattg aggagatcat agtggctagg      5460
     gatggtcggg ttagacaggc gtgggtacgc acgaataatg gaagattcag aagagctaca      5520
     aacaagttag cggttttgga gatcgaatag ggtaacacct gttaaggatt ttaacagggt      5580
     tacgggtcgg ggaa                                                        5594
//
ID   BEL-27_AnFu-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-284
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 731-731 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 284 BP; 70 A; 57 C; 67 G; 90 T; 0 other;
     tgttgcggtg gatcgcgtcc actgtgcgac cgccatgtgt caaacagatt tgacagttgc        60
     cccctgatag gagagtggtg cgacctggca catggccggc gaacagaagt agtagggatc       120
     cggaagccga gttagaagga gcggaaattt gaactacgtt tgaatttatc ttttgtcttt       180
     ttatcttttt atcttttttt gttacacttt actgcttaaa ataaaccaca agtgaaagtt       240
     aattccagac ttttattttt ccgcattgtt ggactgcgcc aaca                        284
//
ID   BEL-27_CQ-I repbase;    DNA;    INV; 7395 BP.
XX
AC   AAWU01040532;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_CQ_;
KW   BEL-27_CQ-LTR; BEL-27_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7395
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 207-207 (2011).
XX
DR   Genome; AAWU01040532; Positions   20930   28324.
XX
CC   Positions [5160-5744] - Integrase core
CC   'ATAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           696..5918
FT                 /product="BEL-27_CQ-I_1p"
FT                 /translation="MDELKDLLKQERQLILTINGVGDFVEAYKKAEHENQI
FT                 SIRLDTLEEAMRKFFKVRRKIEAMIDDEDEDEVVGESKEARKKRLADLVVQ
FT                 REMEYNKALRDVEERYFVVKARLVALRPVKVEPTPGADLNETCFDRSISRI
FT                 KLPDIKLPNFSGELKDWIPFRDTYKSLIHSNVQLPDIDKFTYLRSALQGEA
FT                 QLEILSVDFSAEGYDVAWKALEKKYDNHKLIVKAYLDAIFDIEPLRKESFG
FT                 GLSHLISEFETNLQMLKKLGEGTEAWSTILVHMLCARLDHATLRLWESHHN
FT                 SKAVPKYDVLIEFLRDQCTVLQSIKANRPSEGDGRQNRSRISTAHTSSQSQ
FT                 RRCLFCGETFHMPFNCSKLRNMSVSQRVEEVNLRRLCRNCLNAGHYADGCS
FT                 RGSCSRCGARHHTLLHYDTPAPAGARRGRSSVQNTQNRPPAAGQQQHTRQQ
FT                 GQTQNSSTQPTTSSYPVHQSTSRNTHPPPPTDSRNSTTLNAASLPAQNAPT
FT                 LSRQVLMSTAVVRVEDQFGNYSLARTLLDSCSEFCYMTSTFSKKLKFRTTP
FT                 DVLRVQGIGNGSATSLKAVRAKIQPRLDTISSFSEEMRFHLLQKISSDLPA
FT                 TPVDVSQLMLPSDIILADPYFGEPGPIDMIIGAEFFLDLLSAGRRKIVEDG
FT                 PTLQETVLGWIISGKVPASSPSIPRTATYVSSTVDLKELMERFWELESCHV
FT                 NSTHSVEESTCEELFNKTTIRDAEGRFVVTLPKKQRVIEKLGESRNMAMKR
FT                 FIGMEKRFTTNPALKFMYTEFVHEYLLMKHMREVKEDSGEGPVYYLPHHAV
FT                 LKPDSTTTKLRVVFDGSCGTSSGVSLNDALMVGPVVQSDLLSTVLRFRLHR
FT                 VALIADVEKMYRQIRVTLSDQRLQRIYWRDNEDEPVKTYELSTVTYGTSSA
FT                 PYLATRCLKKLGEDCAESHPVASRVIQEDFYVDDMLSGADSIEEASTLMKE
FT                 VRQVTDSAGFTLRKWNSNCPELLKRLPKHLKDERSTLEIDPAKTTVKTLGL
FT                 RWEVSTDMFCFVLPQWKSELSPITKRTVHSDSAMLFDPDGFLAPVVVQAKI
FT                 ICQQLWRIKSDWDVPLDESLQQLWRDYRMSLMAVATIKMPRWIGFSTDCVE
FT                 IQIHGFCDASERAYGAGLYLRCTALDGSVTCRLFLAKSKVAPMENLKRKKK
FT                 KVNIPRLELSSGLLLSHMYEKVQSILPAAQLFCWTDSMITLGWLASPPSRW
FT                 KPFVGNRVSEIQHITRNAIWGHVPGEENPADIISRGMSPALLQYRTDFYEA
FT                 PRWVVQDRENWPRTQRVSLADFDPEILEERVTPAFPTQVRPPHWLFGLCGS
FT                 YMELVRLVTWLQRSKFNLSPKNRAVRRVGFLKSEELEEAVLFLVRLSQEEC
FT                 FPGEMHCLKADGVVHPTSKIARFNPQLVDGVMRVGGRLSNAKISTNRKHPL
FT                 ILDHHHPFTRLVVMYFHERLFHAGQQLLIASVRSKFWPVNVHSLARQVIHE
FT                 CISCFKSKPKVIEQIMADLPAERVNPAPPFLHVGVDYCGPFLVSYPNRRAK
FT                 PVKCYVAVFVCLAVKAVHLELVFDLTSQAFIAALRRFVARRGKPLQIKCDN
FT                 ATTFVGAKNDLMELHRLFYKQQFQDVVTKTALEDGIEFSFIPPRSPNFGGL
FT                 WESQVKSFKTHLKKTFGLQVLKMDEMLTALAQIEAVLNSRPLTPISNDPQD
FT                 FEALTPGHFLIQRPLTAIAEPDLEGVPQNRLAMWQNAQRFTQQLWKKWSTQ
FT                 YLSNLRSGRRSETTSPLVRWC"
XX
SQ   Sequence 7395 BP; 1743 A; 1963 C; 2075 G; 1614 T; 0 other;
     ttggtccttc gagccggatc gaagtggccg gcccgaagtg gaagaacctt tttgtgtgcg        60
     cgcgtgaaaa gtggccagtt cgctgaacag tggccatcgc gattcggact gtgcgagtcc       120
     gcggcagttg gcgccatcgc gcagttattt gcggctttgt gctgcgtttt ttatgctgtt       180
     ctgcgcgtgg tgctgactgg aagaagcagc tggagcgatc gtggtctgct gggagctgta       240
     catcggcggc tggcggacgg aagctactgc tgctgtgatc gagagtgatt gtgtgtgtgc       300
     tggacgctgc ccatcgaccg gaggttcctg gaggagctgc agcgtaccag gaagtgtttg       360
     ggtttgcatg tggtgcatga ggtgtgtgtg cgttggtgag gtgtgtgcca ttttgggttt       420
     agagtgaatg agtatttttc gagagaagtt ttaataaaga tatttggatt ttttacgcat       480
     ttgcgtttct ttccggagtt gtggtctggg ttttaattgc gcaagccttg atttttgttc       540
     tggtctctgt cggtcggttc actgctggtt ctccaccttg gctgtctctc cccactgtca       600
     atcgggtcgc gtagaacgtt gagttgatcg tttcggtgtt cgcagttgca gttttctgga       660
     tttttggcgg tcaacggtga gtgaaggcgt gaagaatgga cgagttgaag gatttgctga       720
     agcaggagcg gcagctgatt ctgaccatca atggtgtagg agatttcgtg gaggcgtaca       780
     agaaggcgga gcatgagaac cagatctcga ttcggctgga caccctggag gaggcaatga       840
     ggaagttctt caaggtgcgc cgcaagatcg aagccatgat cgacgacgag gatgaggacg       900
     aagttgttgg agagtcgaag gaggctcgga agaagcggtt ggcagatctg gtggttcagc       960
     gtgagatgga gtacaacaag gctcttcgtg acgtcgagga gaggtacttc gtggtgaagg      1020
     caaggctggt cgcgctgcgt ccagtcaagg ttgagcccac tcctggtgct gacctgaacg      1080
     aaacctgctt cgatcgatcg atttcgcgca ttaagttgcc ggacatcaag ttgcccaact      1140
     tcagcggcga actgaaggac tggatcccat ttcgcgacac ctacaagagc ctcatccact      1200
     ccaacgtgca gctgccggac atcgacaagt tcacatactt gaggtccgct ctgcaaggtg      1260
     aggcacagct ggagatcctg tcggttgatt tttctgcaga aggctacgac gttgcttgga      1320
     aggcactgga gaagaagtac gacaaccaca agctcatcgt caaggcgtac ctggacgcga      1380
     tcttcgacat cgagccactg cgaaaggaga gtttcggcgg tctgtctcac ctgatcagtg      1440
     agttcgagac aaacctgcag atgttgaaga agcttggcga aggaacggaa gcctggtcaa      1500
     ctatcctggt ccatatgctc tgcgcgcgtt tggatcatgc cacgctgcgt ctgtgggaat      1560
     cgcaccacaa ctcgaaagct gtgccgaagt acgacgttct gatcgagttt ctgcgtgacc      1620
     agtgtacggt gctgcaatcg atcaaggcca accggcccag cgaaggagac ggacggcaga      1680
     accgatcgag aatctcaacc gctcacacgt cctcgcagtc acaacggcgc tgcctgttct      1740
     gtggagagac gtttcacatg ccgttcaatt gtagcaagct gagaaacatg tctgtgtctc      1800
     aacgtgtgga ggaagtaaat cttcgtcggt tgtgcaggaa ttgtttgaat gctggtcatt      1860
     acgccgatgg atgttctcgt ggttcgtgtt cccgctgcgg cgctagacat cacacgttgc      1920
     tgcattatga cacgccggca cctgctggcg ctcgtcgagg aagatcctcc gttcagaata      1980
     cgcaaaatcg acccccagca gctggacaac aacaacacac gagacagcaa ggccagacac      2040
     agaacagttc cacccaacca accacaagtt cctaccccgt acaccaatcc acttctcgaa      2100
     acactcaccc accaccaccc acagactctc gcaattccac caccctcaat gcggcatccc      2160
     tccccgcaca aaatgcaccc acactgtccc gccaagtcct catgtctacg gctgtagttc      2220
     gtgttgaaga ccagttcgga aactattcgc tcgctcggac acttctggat tcgtgttccg      2280
     agttctgcta catgactagc accttttcca agaagctgaa gttccggaca acacccgacg      2340
     tactgagagt acagggcatc ggaaacggct cggcaacgtc gctgaaggcc gtacgtgcga      2400
     agatccagcc gcggttggat acgatctcgt cgttctcgga ggaaatgcgg ttccacttgc      2460
     tgcagaagat ttccagtgat ctacccgcca caccggtcga cgtcagccag ttgatgctcc      2520
     ccagtgacat catcctcgct gatccgtact tcggagaacc tggtcccatt gatatgatca      2580
     tcggtgctga gtttttcctc gatctgctgt ctgctggtcg gcgtaagatc gtcgaggacg      2640
     gtccgacgct gcaagagact gtgcttgggt ggataatctc tggaaaggtt cccgcatcgt      2700
     cgcccagtat cccacgcacg gcaacctacg tcagctcaac agttgatctg aaggagttga      2760
     tggagaggtt ctgggaactg gagtcttgtc acgtcaacag cacccactct gtggaagagt      2820
     ccacgtgcga agagctgttc aacaagacga cgattcgaga cgcagaagga agattcgtgg      2880
     tgaccttgcc gaagaagcaa cgagtcatcg agaagctggg cgagtccaga aacatggcga      2940
     tgaagcggtt catcggcatg gagaagcggt tcacgacgaa tcccgcactg aagttcatgt      3000
     acacggagtt tgtgcatgag tacctgctca tgaagcacat gcgagaagtg aaggaggaca      3060
     gcggagaagg ccccgtctac tacctgccgc accatgcggt tctgaaaccc gacagcacga      3120
     ccactaaact gcgcgtggtc ttcgacggat cctgcggcac ctccagtggt gtgtccctca      3180
     acgacgcgtt gatggtagga ccggtcgtgc aaagcgatct cctctcgacc gtgctacggt      3240
     tccgcttgca tcgagtcgcg ttgatcgctg atgtggagaa gatgtacagg caaattcgcg      3300
     tgacgctgtc cgaccaacgc ttgcaacgca tctactggag agacaacgaa gacgagcccg      3360
     tcaagacgta cgagctttcg accgtcacct acggaacgtc cagcgctccg tatctcgcta      3420
     ccaggtgctt gaagaagctt ggagaagatt gcgcggaaag ccatccagtg gcgtctcgcg      3480
     tcatccaaga agatttttac gttgatgaca tgctgtctgg cgcagacagc atcgaagaag      3540
     caagtacgct gatgaaggaa gtccggcagg tcaccgattc agctgggttc acgctgagga      3600
     agtggaactc gaactgccca gagctgctca agcggctccc gaagcacctg aaggacgaac      3660
     gcagcacgct cgagatcgat cctgcgaaaa caacggtgaa gacgctggga ttacgatggg      3720
     aggtgtcaac cgacatgttc tgcttcgttc tcccacaatg gaagtcggaa ctgtccccca      3780
     tcacgaagcg cacggtccac tcggactctg cgatgctgtt tgatcccgat ggtttcttgg      3840
     ctccggtggt cgttcaagca aaaattatct gccaacagct gtggaggata aagagcgact      3900
     gggatgtacc gctcgacgaa tcgctgcagc agctgtggag agactatcgt atgagtttga      3960
     tggcggtcgc aacgattaaa atgccgcgct ggattgggtt cagcaccgat tgcgttgaga      4020
     tccagatcca cggtttctgt gacgcctcag agcgagctta cggtgccggc ctctacctcc      4080
     gatgcactgc gcttgacggt tccgtcacgt gtcgactgtt cttggccaag tccaaggtag      4140
     ctccgatgga gaacctgaag cgcaagaaga aaaaggtcaa cattccacgc ttggagttgt      4200
     cgtctggttt gttgttgtcc cacatgtacg agaaggtgca gtcgattcta ccagctgcac      4260
     agttgttctg ctggacggac tcgatgatca cgcttggatg gcttgcgtca cccccgtcac      4320
     gttggaagcc gtttgttgga aatcgggtct cggagattca gcacattacg aggaacgcaa      4380
     tctggggaca cgtgcctgga gaagagaatc ccgcagatat catctcgcga ggaatgtcgc      4440
     cggcgctact acagtaccga actgacttct acgaagcgcc gcgctgggtc gttcaagatc      4500
     gggagaattg gccacgaaca caacgtgtgt ccttggcgga ctttgaccca gaaatactgg      4560
     aagaacgtgt caccccagca tttcccactc aagtgcgacc tccgcactgg ttgtttggac      4620
     tgtgtggctc gtacatggag ttggtacgct tggtgacttg gctgcaaagg tccaagttca      4680
     acctttcacc gaagaatcga gctgttagga gagttggatt cctgaaatcc gaagaattag      4740
     aagaagctgt gctgtttttg gttcgactgt cgcaagaaga atgtttccct ggagaaatgc      4800
     attgcctgaa ggccgatggt gtggtccacc caacgtcgaa gattgcacgc ttcaacccac      4860
     aactggtgga tggcgtcatg cgagtcggtg gtcgtctctc gaacgcgaag atctcgacca      4920
     accggaagca ccccctcatt ctggaccatc accatccgtt cactcgactg gtagtgatgt      4980
     acttccacga aagactgttt cacgcagggc aacagctgct catcgctagc gtccgctcga      5040
     agttctggcc tgtcaacgtc cacagcctag caagacaggt catccacgaa tgcatcagtt      5100
     gcttcaaaag taagccgaag gtgatcgagc agattatggc ggatctgcct gctgaacgag      5160
     tgaatccagc tccgccgttc ctccacgtgg gcgtggacta ctgtggccca ttcctcgtca      5220
     gctacccgaa tcgcagggcg aagcctgtga agtgctacgt ggccgtattt gtgtgtctcg      5280
     ctgtgaaggc tgtccatctg gaactagtct tcgacctgac gtcccaggca ttcatcgcag      5340
     cattgagaag gttcgtggca cgccgcggca aaccgctgca gatcaagtgc gacaacgcca      5400
     ccacgttcgt cggagcgaag aacgacctga tggagctgca ccggctgttc tacaagcagc      5460
     agttccagga tgtcgtcacg aagaccgcgc tggaagatgg gatcgagttt agtttcattc      5520
     caccacgctc accgaacttt ggcggcctgt gggagtcgca ggtcaagtcg ttcaaaactc      5580
     acctgaagaa gacattcgga ctgcaagtac tcaagatgga cgagatgcta actgccctag      5640
     cgcagatcga agctgtgctc aactcgagac cgttgacgcc gatcagtaac gacccgcagg      5700
     actttgaagc gctaacgccc gggcatttcc tgatccagcg tcccctcacg gccatcgcag      5760
     agccagattt ggaaggagtg ccacaaaacc gcttggcaat gtggcaaaac gcgcagcgtt      5820
     tcacgcagca actttggaag aagtggagta cgcagtacct gtccaacctc cgaagtggac      5880
     gaaggagcga aacaacgtcg ccgttggtac gatggtgctg atcaaggacg agaacgcgcc      5940
     tccccagaag tggaaacttg gtcgagtact gcacgtgttt cgcggaacgg acggcaacgt      6000
     gcgcgttgtg accgttcgca cggcaaccgg acgcttcgat cgagcgttct cgaaggtctg      6060
     cgcgcttccc attcgggaca accaagaatt aaatcaatcg acgtctgatt aagcactcgc      6120
     tgtgcgcccc ggcgctgctg cgtcatccat tctcgaagtt tatgttggtg tctgtaggat      6180
     gtatgtgtgc atgttaagtt gtcgtagaag gaagttcact ggacgccgtc cagtctctct      6240
     actcggtaga cacctgtcta ctcgagctca gcgagcaagg cgctcacctg gttttgggat      6300
     tatatgttgt catgtcgtta atcacaccct atcatatctt cccacgctac cacgtctcac      6360
     tggaggaccc atggatcctg ccagtcggtc tcggctgctc gtgcggcatt gagcttggcc      6420
     agctcacgcg ccgatcgacc ttcccgacga ccacgaagta cgaagtcgaa gacatcccaa      6480
     gccagcgaag gacaacgccc ccaggaattc accgatgatc tgcggatcga gcgccagaat      6540
     tcacctggtg gggtaagttg ttccagttca cgcacgctac atacacctac tacatccaag      6600
     ttctgtccga ggcacaccac caactacatc gacgtccgaa agtccacccg cacaaaacga      6660
     atccgcaaca acagcacagc ggcgatcagc acaccggcga acgacacacc accagcgtaa      6720
     cacctttatg gcctgcgggc ccagtatcat cgttacctgg ctgggtaagt tgttccggtt      6780
     ttatagaaat ctacgcaagc atactacaac aaatctctcc ccgaggaaac ctgcaacgaa      6840
     atcaacatca acaagatggc atttcaacga agaagaagaa ggcatcaacc gatgcacctg      6900
     caccccaacc gtgtgcactc tgtggtcgac agtttgtccc acccgaagca gagcgtgttc      6960
     cgctggagca tgcgacccac ccacaccgaa gattcgcagc gcaaggctgc accagaaggt      7020
     cagcacacgg ccagcgagct ggcgaaggct gacgacgcga agcagaggct gcaacggcag      7080
     caaaaacacc accacgaccg ctactcggcg gcgaccccca cgagaaggct gcagcggcag      7140
     caccgaagca gcaggtgacc tgatgcaagg agcagagttg cagtagaagc agaattgcag      7200
     cacaatccag ctgcgtcgtc cacgatacac ctcaccccac gatggcagca gttttgttta      7260
     caacagatcg aatgaattat tgaagtgttg tgaagttagc cctaagagtg ttagatatgt      7320
     aattagtatt agtgaaagac gaaggtagag aggtttttga aatggttgaa accacaggtt      7380
     tcaaggcggg cggca                                                       7395
//
ID   BEL-27_CQ-LTR repbase;    DNA;    INV; 393 BP.
XX
AC   AAWU01040532;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_CQ_;
KW   BEL-27_CQ-I; BEL-27_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-393
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 208-208 (2011).
XX
DR   Genome; AAWU01040532; Positions   20537   20929.
XX
SQ   Sequence 393 BP; 102 A; 79 C; 107 G; 105 T; 0 other;
     tgtttagaaa ttaagtttat ttgtgcattg cgccgtttac cctatgaatt agatcacatt        60
     gaagatgaac cgtgagagaa gagagtgagt gagagagaga gaaagaggga ccgtacggga       120
     gtgcccgacg ggtcagtttg tttatcattt gcgaataaag tttaagttga ttgccgatac       180
     tcgaccggct cggttcttaa gccaccccgc gtacttgtac cgttagttcg tcgcgcaata       240
     aagttgtttc gcacaacaac ttgtgttttt attcggccta cgggtgaaga aggtttggtg       300
     cgaggtcgtt gacctcttga gaagtgcgct ctggacgagc agaagaactc ccccgcaata       360
     cagtccacaa tttgaagggc tcgatccgga aca                                    393
//
ID   BEL-27_DTa-I repbase;    DNA;    INV; 7826 BP.
XX
AC   .
XX
DT   18-JUL-2021 (Rel. 26.10, Created)
DT   18-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7826
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5643-5643 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 7826 BP; 3015 A; 1219 C; 1485 G; 2103 T; 4 other;
     ttttggtcct tcgagctaaa ctttgtagtc atcccccacc agtggtaaga ggctcagagt        60
     tgtagctggc accttaaagt ctgatttgtt gcgagcgcac gatcagctac aggctgcaaa       120
     aataaaataa aataaaaact tgtgtcttcc cccaccagtg gtaagagacc aagtaaataa       180
     taaataacac aagttttact tgttaaataa aataagccaa acgggcaagt tttctaaaat       240
     aattctcggg ttttgttgcg tgacggtggc gttaccaagg ccaaaaacat tggtaaatcg       300
     tttttaaaat taaaaaataa aaagagaaag tgttcggcgt gacgaaaagt gttaaaaaac       360
     taaaaacaga aatgcagtga tacacaaaac caattcaacc cgaactttaa aaattcttgt       420
     aaaatataaa aacgaaaaac aaggcccacg aacaacaccg aagcagtaac aacaatcatt       480
     ttttaagaac aacaaacgac atcgaggcgg caacaaacaa caaacgacat cgaggcaact       540
     atckacatca gagcagtgat aaggaagaag acgacgaaaa gaagaactac gtcatctacg       600
     acaacatcac agcggcatct acataagcga gcttaacgga gaacatcacc aactgaagca       660
     gcagataaga tagtttttaa attttttcac atttaatatc awttacatat acactttatt       720
     tacaaaatcc aattcatatt cacatatata tataaatata tattatatac atattttttg       780
     atatacatat tttatacata aattctttaa atcatgttgt ccgaaacaat tttaaaattc       840
     ttagaggctc aggcaagcct aacaaaagag gttagagtga ttgaagctgg tcaattaacc       900
     agtgacgcaa tcctcaaact tgataaaata aaagcaaaat tcaccgcaaa ccacacaaat       960
     ttgttaaaac taggagtagt caatcatgat tactttaacg aaaaaatgtt cgatgagatt      1020
     tgtaaagtaa ttgaaactct taaaaataaa tttagcaaca tgaaagctat ttctggaacc      1080
     caagctgaaa ctaagaaaac tgaaacagac ccagtaaaat tggcagaggt gttcgataaa      1140
     aatgtcgaac aattaaggga ttatttggag gaaacccatc aggagctcag tcaggctagc      1200
     agggaaattt gcagccttag agctaagaaa atagaatttt tatggagtag aactgataat      1260
     aaaataaaag aattctacaa actctatgag aataatttat ctttcgacga aagtgtcgaa      1320
     gatttagaat ttgacgtcaa aaacattttg gacatcctgc aagaaaggat gaatgcttcc      1380
     gaagcaaaaa cggaaggcaa ttgtggggtt atggtaaagg aaagggctga taaccttcct      1440
     gtgttaccaa aaataaaagt tcccaccttc tccggagaag gcaaagagtg ggacttattt      1500
     tcggaattat ttaaagaaat aattttcaat agagatgatc tgagcacatc tctaaaattt      1560
     aactacttac aaaccgctct caaaggcgaa gcaaggagta tggtcgctca cttgctaatc      1620
     ggttctgccg aaaattataa tgccgcttgg gaactattaa ccaagcggta tgaaaacaag      1680
     agacaaatat tctctgatca gctgaatcgg ttgatcgatt tgcccatgct agacaacgat      1740
     tcagctaaac aagttaaact gtttattgac tcaataaatg aatcgattca tttaatgaag      1800
     tcaaaagcaa gtttaaatga agatgttgat gtgatcttcg cgcacatcat cattcgaaaa      1860
     tttaataaag aagcgttaca attatatgaa acgcatataa agaaaactaa ggaaatccaa      1920
     ttactagacg acgtaatgga cttcttagaa caacgttata gttctcttgc ctcatcaaat      1980
     ggtgaggaaa agaagccttt taaaagaatg gtaaatacct ctgtaaaaga aggctgtcta      2040
     ctctgtaaaa tggttggcca ctttgtgtca aattgctata aatttaaggg aatgagtccg      2100
     gtggaaagag gggaatttat aaaaaaacag cgcttgtgca ataggtgctt taagcattct      2160
     tcatttaaaa agtgtaactc tgaatattta tgttcagttt gcaaaaaacc acatcataca      2220
     atgctccatg tcccaacaga taaaagggag aaagtaaaca cttgtgtcac aaaagaacaa      2280
     gcgtttctag ccacagccct aattaaagtc aagtcaaaaa atggtggcta tgaaagcctt      2340
     agagcattaa ttgatagtgg gtcgcagtgc actattatat cagaagaagc tgcacaaata      2400
     ttaaatttaa caaggaaaaa gagtttcact gaggttagtg gagtctctga cacttgtatc      2460
     tcaaaacata aagtaaattt aagtataaaa acgcgcgata ataaaaaaga ttctcttagc      2520
     attgaagcca tcattcttcc caaactaatg aaggctttgc caaaccaaac attaaatatt      2580
     gataaatcta agtggacgaa atatacgttg gcggaccctc actttaataa accaagtagg      2640
     gtagatctta ttataggagt ggatttatat ccccatatag ttaaaaacgg agtagttaaa      2700
     atagacggac tactaggtca aaatacggaa ttcgggtgga ttgtatccgg gtgcaccaaa      2760
     tcaaaaggtg aaaaattaat tgtggctact actgtggaag tagaaaactt agaccggttt      2820
     tgggaaatgg aaaatgaaaa taatgatatt gaggaagaaa tttgtgaaaa acatttctta      2880
     gagaccacta aaatagatga aaatgggaga tatgtggtca aaattccatt taaaaatgaa      2940
     aaagaattag gagactccaa agcgcaggcc atagcgcgat tttataattt ggaaagaaaa      3000
     ttaaataaaa atataaaact taaagaaagt tacattaaat tcatgcatga atatataaac      3060
     ttgggccaca tgatagagtc caagaaagaa ggaaaatatt atttacccca tcaaggtgtt      3120
     gtaagagaat caagccttac aacaaaatta agggtagttt tcgatgcctc agcgaaaact      3180
     acaaacaata aaagtctaaa tgacattatg tgggttggac caagagtcca aaaagatata      3240
     tttgatatca ttgtcaaatg gcgtaaatgg ccatttgtaa tatcggcgga cattgagaaa      3300
     atgtaccggc aaataaacat tgatgaagaa gatcaacaat atttgcacat tatttggaga      3360
     gattccccaa ataaaaaatt aaaagagtac aaattaacaa ccgttacata cggaacagct      3420
     tcagcaccct acttagccac aagagtgctt gctgaagttt cgaatagatg cgaaaatcta      3480
     tcgattaagg aaataatcag aaatgatttt tatatggatg acctaatgac aggtgctaat      3540
     tccataagag aagccaaaga tcacgttgaa gatataacct ttgaattaga aaaggtgggt      3600
     ctcaacttaa gaaaatggat ctcgaatgtc tcagaaattg tggaagcttt ggaaagcaaa      3660
     gaagaaaata aaatattaga gattcgagaa aatgaatcca ttaaaactct ggggcttcaa      3720
     tgggaaccaa ttaaagatga atttaaattt aattttaatt gtgaacacgt cgctaatatt      3780
     aataaacgaa tagttttatc aacattagca aaaatttatg accccctagg ctggttgtct      3840
     ccagtaacca tagtaggaaa attattcatg caaaagctat ggttgacaga gcaaaaatgg      3900
     gatcagaact tgtcagaccc agatgccaac gaatggaaag cctttaaaga gaacttaact      3960
     tctcttgaag gtattagaat ccccaggtgg gttaagtccc aggaaaatat gccagtacaa      4020
     attcatggat tctctgatgc gtccgaaaaa gcgtacgcag ccgtagtgta tgccaaagtg      4080
     ggatcctcct ctatgattat agctagcaag agcaaggtta atccgaagaa aaatagaaaa      4140
     accatcccta aattagagct atgtgctgca catcttctat caaaactaat agatagagtt      4200
     aggacagcaa ttggagggga agcaaaggca tatggatgga gtgattcaac gatcacacta      4260
     gcgtggatta gaaatgggaa taataaagac aaatttattc gacggcgaac tgacgaaata      4320
     agaactttta agaacattga ttggagacac gttagatcag aagacaatcc agcagacgta      4380
     gcgtcaaggg gaataacacc agaaaaattg ctagaatgtg caatttggtg gaacggacct      4440
     caatggttgg ccaaatcaga aaaatactgg ccgaaagagg aacaagtaga tggtataatt      4500
     gtcagtaccg ccttaacagg gaaatcaagc cagttaatat tatcattaat agaaagatac      4560
     tcctgtatgc aaaaattaga aagaattatt gcatatatct taagatttat tgaggtaaag      4620
     ttaaaaaaga aatcgtttcc cacatatttg acagtgaatg aattaaaatt ggcaagaatt      4680
     ttaatwataa aacagcaaca ggaaagtcaa tttagttcag aaataaattg cttaaggcac      4740
     caacaggata ttggaactaa aagcaaaata ttaggattaa atccattttt agataaagat      4800
     ggattattaa gagttggagg tagattacag aactccagcg cagaattttc gataaaacat      4860
     cccttaattt tagataagtg tcatttaacc ttattaataa tcagaaatgc acatagggaa      4920
     acattgcacg gcggaattaa ccttatgcga aattatattc aaagaaaatt ttggatattc      4980
     ggattaagga acagcctaaa gcattatcta aaacaatgtg ttaaatgtgc aagatacaga      5040
     caaattacag ctgaacaaat catgggaaat ttaccaaagc atagagttac tatggctcac      5100
     ccgtttctga atactggagt ggactatgct ggcccatatc atataagatg ctcaaaaaat      5160
     cgaggccaga aatcttataa gggttacatt gctgtatttg tatgtatggc aaccaaggct      5220
     atccatttag aagttgtaag tgatttgact tcagatgcct ttttagctgc actaagaaga      5280
     ttcttttcca gaagaggaaa atgtgctaaa atattttcag ataatgggac aaatttcgtg      5340
     ggagccgcca gaaaattgga tgaagatcta cagaaggcac tcaacgaaaa tattaaaata      5400
     attccaatat tagaaaacga acaaattgaa tggcatttta ttcccccggc aggacctcac      5460
     tttggaggta tttgggaagc tggggtgaaa tctgttaaat accacctaaa aagaacaatt      5520
     ggggataata atctaactta tgaagagatg gcaactctat tatgccaaat tgaagcggta      5580
     ttaaattcaa gaccattata tacaactaat actgacattg acgattggga agttttgaca      5640
     ccaggtcact ttctgatagg aaggcccaca ttaggaccta ttgagaccat ttccgaggaa      5700
     agaattggaa atttagatag atggaaatta attcagaaaa tgaaaagaga attttgggtt      5760
     aaatggaaga atgattattt aaacactctt caacaaagga ataaatggaa attaggaatg      5820
     ccaaacctta ataaaggtca aattgtatta ctaaaagatg aaaattgtca tcccgctaga      5880
     tggcccttgg gaaaagtaga agaaatacat aagggaaaag acgaccgagt cagagtagta      5940
     aaagtaaaac tacaagatgg ttcaatttta agacctatta caaaagtttg tcctctaact      6000
     ggtattgagg ctgaagagag cgagtcacct atctcggtca agcagactaa gggtaagggt      6060
     actcgcagta gccctagaat ccataaactt ggattaatgg cgataatgtt aatgctaatg      6120
     ttattttgcc aggtgtctaa tgcaagttca cctacgcaag ggaatcaaaa atggtcaatc      6180
     aagaaattac acgagaataa ttccatttac ttagatccaa tgggagacgt cgaagtcata      6240
     gcctcatctt gggatctaat tgtatattat aacatggatc catatttcga catgataaga      6300
     aagggaaaac tgttgaatgg aaaaatgaga gtggtgtgtg acaagcttca tgggtttgaa      6360
     gatcaatgta atactgttct tgataatact caacgacaga ttacagattt agaagagaac      6420
     aataaactgt ttatgactca ggataggaaa agatataagc gagctccatt cgagtttatg      6480
     ggctctctct atcacatact ttttggtata atggacgctg aagataggga taacttagag      6540
     ggtaacatga agaacctctt agataaccag caaaatactg cagaattggt taaaaagcaa      6600
     acctctgtag tagaatctac aataaatatc ctgaaaagaa gtacggatga tataaactca      6660
     aattttcgaa gtatgactac gcgaatagaa aacataacag aagttttgaa agaaagttac      6720
     tatgtctata aagagtcaat taatttcttt atggtgacaa aacaattaac ttctttaatt      6780
     gaagaatgtg aaaagattca agcaggtgta ataagcttac tcatagatat aaaccatggt      6840
     agattgaatc caaatatttt aaagccaatg caattaaaaa aggaaatttc cagaattaag      6900
     gatgcattac tagaaacctt agtactacca ggtaaaagaa caggaactga gttaaaggaa      6960
     atttacacat tattaacagc taaaggaatt tttgtggata ataagttaat tttgaatgtt      7020
     aaaattccct tatttggtag acacccttcc catcttttta gagtaattcc tatgccagtc      7080
     aaaattaaca atgaggttat tattgcagac ttaaattcta aatatttagt ttacaatttt      7140
     gaaatagact cctatcatct aatgtcggaa gctaccttaa gtaggtgtca aaaatggaaa      7200
     gctaataacg taatttgtga aggtaattgg ccttggagta gcgctaatga caatacttgc      7260
     gaaataactc cctttaaacc aaatagtccc tctaattgta tttataaaaa aatgactcag      7320
     atcaattctt actgggttga gttgcaaaag aaaggtagtt ggctatttaa ggttccagaa      7380
     ataactaaag ctagaattca atgtaataat ttaccgcaag aattaataga cctgcctgag      7440
     caaggaattt taacgattgt gtctggttgc actataagaa cagacgacaa aatattaata      7500
     gctcatcata gtattcagtc agaagcttat gagccaatat cagtttctta tgtaagtaat      7560
     ataagtacga ttccaagtat tgtttggaat ccattaacat tgccgattat tgaccacaat      7620
     aaagagttag ctaaactaaa gaatgaatta aaagaaataa gagaaaatca ctatgaatta      7680
     aaaggactka attttcatca cctgtcaggt catgcggcat taatcgtagg tttagtaatt      7740
     atattaattt taattgttta tatgataaga cgaataaatg tagcaagacg aatgcaggcc      7800
     ataattcttc ctggcccctt gcagaa                                           7826
//
ID   BEL-27_DTa-LTR repbase;    DNA;    INV; 339 BP.
XX
AC   .
XX
DT   18-JUL-2021 (Rel. 26.10, Created)
DT   18-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-339
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5656-5656 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 339 BP; 105 A; 67 C; 50 G; 117 T; 0 other;
     tgttcacaca tgaacatggc tttgtttgta atattgattt gcctcgcact gtaagtttaa        60
     aaataccaat tgtaatctgt aaaccaaaat atcagtgcat gagttcaaat gctatcaacg       120
     ctattttaag ttgagcaacg ccaatgcagc gttccaaaaa tatgtctaag aacgcttatc       180
     tatttatatt ctaatgcgcc cctttccccg acgcattggt ccatactatt gtactccgct       240
     gtactctata taagctagtg ttttacaaaa taaaaatcag tttgaattat caactcaaca       300
     aatgtggatt tctttctttt gggattgaac atctttaca                              339
//
ID   BEL-27_SiCu-I repbase;    DNA;    INV; 5663 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5663
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5001-5001 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..5588
FT                 /product="BEL-27_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MTLTRQQAKAQQIAMDAAKXKSETALQLVKDEFLELE
FT                 NLLAATPIDQNAIXGQQQIVEGEVENFFVVQSKYIDLLLEKTMDAEYKAEE
FT                 VQRQTIRKKRITTYAKVAKILQPPPSSSTSTVSSSAAATSGVAVAVNTGAY
FT                 RVNLPKRELPKFSGDVRQWPSFWASFKEVDSDTTVPEIEKYNFLKLSMLDG
FT                 SAAAKVVSSFPAADSSYQLAKNELEQRFGRKKTLIKVYVRDLLSLVVENSK
FT                 EKKNYNFVDVVTSLQSQILNLEQLGVTQDKFGELLYPIIESCIPVEVLNRY
FT                 LDSSTSKEDLPTIMDFLKNEVRRKEESARAQEAFXGNGKVDKQQQRGSGKS
FT                 VDKPAPTAANFINATEKTCGFCGNNHNSLDCRKAKSMTLEERKMAIQKSGS
FT                 CYRCLQKGHSAKQCRSKLXCDSCKKRGHHALMCYGAEAEMRVDQLHISPQN
FT                 YWNSPPLSPMQLEFMRKAEASRQPQQQQPASTXPSNSXPAQDWTFGPGPSS
FT                 QRQQSSRRDNDSSARVNADYANYVRKQEVLMQTLLVRIYAPNGSSRTVRAM
FT                 YDPGSQSSYIKRSLAVDLKLQSVGKERVVHQTFGGALSQEMEHAVVIIEVS
FT                 GVAGPYSQRQKFEASVVPKMADNIIAVPNGPWLMECANANIPLTDVVDITY
FT                 DIDILIGNNASPYLKVGMRSVLLPSGLVATETRLGWFLEGNIPGSEKKRST
FT                 KAMVCINMQITDREVENYWALETIGIRDAAENRTRAELEEAAVKHFNATVK
FT                 RDESGRYEVHLPYIEGHPALPANKFLVQRRLEKTTKDLVRDGYLRQYDAIF
FT                 KDWEQQGIIEKVPLHQPESGVIHYLGHRAVFKEGSTTPVRPVFNASGKTKA
FT                 NPSLNDCLEKGPNLLEIIPSILSRFRMGEIGCVSDVAKAFLQLKVTPQHRD
FT                 CLRFLWWEDINDRKGIVEYRHCRVVFGVSSSPFLLGATIQHLLDQNEVNFP
FT                 ETVKKLRSAFYVDNCVASLPTLEEAVEFRKEAEQIFLSAKMDLRGWEFGPS
FT                 SSGKEVPVLGMIWNTGRDTLSYDIKKILKRMDSPVTRRNVLQLANSLYDPL
FT                 GLLSPFVIVIKMIFKKICADDRKFGWDCELPEEFKKAVVSWRCQLESLTSL
FT                 EIPRFIGASGAGKGWSLFVMADASKESYACCIYLRIEGSPVRVQLVQAKAR
FT                 VTPIMKILTIPRAELLACLIAARLYTQVAADIGVAHIPVTFYSDSTTALTW
FT                 IKKTDAVWGVFVNRRVEEIRRLTNVSDWKHVPGELNPADLPSRGTTVEKYM
FT                 MQRWWEGPEWLYGPMSSFPNSIPEVDEEAVARERKKTVVSAVVQVQKPNFL
FT                 DGMIRLGDWHKILQVLANIIRFGKNLKQKRHSASTPEDIREAEIVLFRRIQ
FT                 RIGFANQPPPENLQPKKDENGLLRVVTRIVHGEEDANFKYPVLLPGSXELV
FT                 RVLIMKEHSLASHCGVQFXMSILRQKYWIVNCRRXVKAVISKCAICRVHMA
FT                 KRCQVQEAPLPLNRIKMTRCFAICGVDLAGPLILRDKQKAWIVLFTCAVYR
FT                 AVHLELVTSLSTEAFLVALRKFIVRRGRPSTIYSDNGTNFVGTANLFKTIA
FT                 WKEVEQYATVSKIDWIFNPPTAAWWGGWWERLIGLTKQLLRRVLGRRTVEF
FT                 GQLELLVLEVEAVMNERPLTYISEDPMDLRPLTPSIFMRDLPVNWLPETEV
FT                 TAERLRGCWRHVKNLKEQLQSRFRKEYLSELVHRGKVRKTDVLDVGDVVLV
FT                 EVENHKRIEWPMGVVMEVYPGLGGSRTAKIRTTHGEFVRPFQRLFPLEVKE
FT                 IPNAKLERKAXEDTSGXIILEDDAEVPEEILEDGPEPIIISKFGRRVKKPT
FT                 RLGIK"
XX
SQ   Sequence 5663 BP; 1580 A; 1261 C; 1495 G; 1286 T; 41 other;
     tctggcgaac cgctgccagg attctacakt aatwaamagt gaatttttta agtgttttag        60
     ttaaaaaata ctacagttta aaggacttct tctcttcagt ttagtggatg accttgactc       120
     gacaacaggc taaggcacaa caaatmgcaa tggatgctgc aaaawcgaag agcgaaacag       180
     ccctgcagtt ggtgaaagat gaattcctgg aactggaaaa tttattggct gccaccccta       240
     tcgaccagaa cgcmatcsaa ggtcaacagc aaatagtgga gggggaggta gaaaatttct       300
     ttgtggtcca gagcaagtac attgacttgc ttctggagaa aactatggat gcggagtaca       360
     aggcggagga agttcaacgg cagaccataa ggaagaagcg tataactaca tacgctaaag       420
     tggctaaaat cctccagcca cctccatcat catcaacctc aacggttagc tcatcagcag       480
     cagcgacatc aggagtagca gtagcagtga acacgggtgc ctatcgggtc aatctgccaa       540
     aaagggagct gcccaagttc tcaggggatg tccgccagtg gccatcattc tgggcatcct       600
     tcaaagaagt ggattccgac accaccgtgc cggaaataga aaaatacaat ttcctcaagc       660
     tgtccatgtt agacgggtca gcagcagcca aagtagtttc cagttttcca gcagcagaca       720
     gcagctatca attagccaaa aatgaactgg aacaacgctt tggaaggaag aagacgctga       780
     ttaaggtcta cgtacgcgac ctgctctcct tggtggtgga aaactccaag gagaagaaga       840
     attataattt tgttgacgtt gtgacttctc tacagtcaca gatcttaaac ttggagcaat       900
     taggcgttac scaagacaag tttggagagc tgctgtaccc catcatagag tcgtgcatcc       960
     cagtggaggt actcaaccgg tacctagata gctcgacgtc caaagaagac ctccctacsa      1020
     tcatggattt tttgaagaac gaagtacgta ggaaggagga gtcagcacgc gcccaagaag      1080
     cwttcwgtgg aaatgggaag gttgataagc aacagcaacg gggctccggc aaaagtgtgg      1140
     acaagcccgc ccccaccgcc gccaacttta tcaacgctac agagaagaca tgtgggtttt      1200
     gtggaaacaa ccacaattca ttggactgcc gcaaagcaaa gtcaatgacc ttggaagaaa      1260
     ggaagatggc aatacagaag tcmggttcct gctacaggtg cctgcagaaa ggccacagcg      1320
     ccaaacaatg tcgaagcaag ctcasctgcg actcgtgcaa gaagaggggt caccacgcac      1380
     tcatgtgcta cggagctgag gcggaaatgc gkgtagacca gctacacatc tcacctcaaa      1440
     actattggaa ttcgccccct ctctctccaa tgcaattaga gtttatgagg aaagcagagg      1500
     caagcaggca acctcaacaa cagcagccag caagcactmc wccaagcaac tcmkcccctg      1560
     cacaagattg gacttttgga cckggacctt catcacagcg acagcagagt agtcgacgtg      1620
     acaacgatag cagtgcccgg gtcaatgcag attacgccaa ttacgtacga aaacaggagg      1680
     ttttgatgca gactttgttg gtgcgcattt acgcaccaaa tggatcttcc cgaacagttc      1740
     gagcgatgta tgaccctggc tctcagtcat cgtacatcaa acggtctttg gctgtggatc      1800
     tcaagttgca gtcagttggg aaagaacgag ttgtgcatca aacctttggc ggagctttgt      1860
     cccaggaaat ggaacatgca gtggtaatca tcgaggtttc cggtgttgca gggccatact      1920
     cacagcgcca gaaatttgaa gcttcagtag ttccaaagat ggcagacaac ataattgctg      1980
     tgccaaatgg accttggctt atggaatgcg caaacgcaaa cattccatta acagacgtgg      2040
     tcgatattac ctacgatatc gacattttga taggcaacaa tgcctcaccg tacctcaagg      2100
     ttggcatgag atccgtcctc ttgccttctg gattagtggc aacggagaca agactcggtt      2160
     ggttcttgga ggggaacatc ccaggctctg agaagaaaag gagcaccaaa gccatggtct      2220
     gcatcaacat gcaaatcacc gaccgagaag tggagaatta ctgggcgctg gagacaatag      2280
     gaatacgaga tgcagctgaa aaccgcaccc gagcagaact ggaagaagca gctgtcaagc      2340
     acttcaacgc cacagtgaaa cgagacgagt cggggaggta cgaagttcac ctgccatata      2400
     ttgagggtca ccccgcatta cctgccaaca agttccttgt tcaacgcaga ctggagaaga      2460
     ccacgaagga tcttgttcgt gatggctact tgcgacaata cgacgccatw tttaaggatt      2520
     gggaacagca ggggattatt gagaaggtac ctctacacca gccagaaagt ggagtgattc      2580
     actacttggg tcatcgtgcs gtwtttaagg aaggcagtac aacaccagtm cgtcctgtct      2640
     tcaacgctag cggkaaaacg aaggccaatc cctccctsaa cgactgcctg gagaagggac      2700
     ctaacctgtt ggaaataatc ccatcmatcc tttcacgttt ccggatgggc gaaatcggct      2760
     gcgtatcaga cgtagcaaaa gcttttctcc agctgaaggt caccccacag catcgtgact      2820
     gcctcmggtt tttatggtgg gaggacataa acgacaggaa agggattgtg gagtaccgac      2880
     attgccgtgt tgtctttgga gtcagctcca gtcctttcct cctaggtgct accatacagc      2940
     acctcctgga tcaaaatgaa gtgaactttc cggaaactgt gaagaaacta cggtctgcat      3000
     tttatgtaga caattgtgtg gccagcttgc caacactgga ggaagcggtc gagttccgga      3060
     aggaagcaga gcagatcttc ctatctgcaa aaatggatct tcgtgggtgg gagttcggac      3120
     cgagctcaag cggaaaagaa gttcctgtcc ttggcatgat ttggaacaca ggccgggata      3180
     cgctctccta cgacatcaag aagattttaa aacgaatgga ttcaccagtg acaagaagaa      3240
     acgtgctcca gttagctaac tcactgtatg accctcttgg tttgctgtcg ccctttgtca      3300
     tcgtcatcaa gatgattttt aagaaaatat gcgctgacga taggaagttt ggatgggatt      3360
     gtgagctgcc agaggagttc aagaaggctg tcgtaagctg gagatgtcaa ttggagtcgc      3420
     tgacaagctt ggaaattcca cgatttattg gagcatcagg ggctggaaaa ggatggagtc      3480
     tgtttgtcat ggcagacgca agcaaagaat cttacgcctg ttgtatatac ctaaggatag      3540
     aaggaagtcc agttcgtgtc cagcttgtcc aggcgaaagc aagggtgacg cccatcatga      3600
     aaattctcac gataccccgt gctgaattgt tggcttgtct catcgcagcg agactatata      3660
     cgcaggtggc agcggatatt ggagtggcac acatccctgt cacattctac agtgactcca      3720
     caacggcgct gacctggata aagaagacag acgcggtgtg gggagtgttc gtcaaccgac      3780
     gagtagaaga aatacgacgc ctgacgaatg tcagtgattg gaaacacgtt cccggtgagc      3840
     tgaaccctgc ggatttgccc tcccgtggaa ctacagtaga gaaatacatg atgcagcgat      3900
     ggtgggaggg accagaatgg ctatatggac caatgtcgag tttcccgaat tccattccag      3960
     aagttgacga agaagctgta gctagagaaa ggaagaaaac tgtggtctca gctgtagtgc      4020
     aagtgcaaaa gccaaatttt ttggatggaa tgatacgact tggagactgg cacaaaatct      4080
     tgcaagtttt ggccaatatc atccgttttg gcaaaaattt gaagcagaag cgccattcag      4140
     catccacacc agaggatatt cgagaagctg aaatcgtcct cttccgccgc attcaaagaa      4200
     ttggatttgc caatcagcca cccccagaaa atctgcagcc taagaaggat gaaaatggac      4260
     ttttgcgtgt tgtgacgagg attgttcacg gagaagagga tgctaacttt aagtatccmg      4320
     ttttgctgcc wgggagtmat gagctagttc gagtactcat catgaaggaa cactckttgg      4380
     cgtcgcactg tggagtccag ttcwtgatgt ctatcctcag gcaaaagtat tggatcgtga      4440
     attgtcgtcg tamsgtgaag gctgtcatct ccaaatgtgc aatttgccgt gtccacatgg      4500
     ctaagagatg tcaggtgcaa gaggctcctc tgcctctcaa cmggatcaag atgacccgct      4560
     gttttgcmat ttgtggagtg gatttggccg ggccccttat tctcagggat aagcaaaaag      4620
     cgtggatagt gctctttacg tgcgccgtgt accgggcggt acatttggag ttggtgackt      4680
     cgctgtccac ggaagcattc ttggtggccc tgcggaagtt cattgttcgt cgcgggcgtc      4740
     cgagtaccat ttactcggac aatggtacaa attttgtggg aacagctaac ctgttcaaaa      4800
     ccatagcctg gaaggaagtg gagcagtacg ccactgtctc caagatcgac tggattttta      4860
     atcccccaac cgccgcctgg tggggaggtt ggtgggagcg acttatcgga ctcacaaagc      4920
     agctgctgcg cagagtttta ggccgacgta ctgtggaatt tggacagttg gagttgctcg      4980
     tgttggaggt ggaggcggtg atgaacgaaa gaccgctcac ctacatatct gaagatccga      5040
     tggacctgcg gcccctgacg ccttccattt tcatgaggga tctgccsgta aactggttac      5100
     cagaaacgga ggtcacagcg gaaagactga gaggatgctg gcggcacgtg aagaatctca      5160
     aggagcagct acaatcccgt ttccggaagg agtacctgag cgagttggtc caccggggca      5220
     aagtgagaaa aactgatgtc cttgacgttg gagacgtggt actcgtggag gtcgaaaatc      5280
     acaagcggat tgagtggcca atgggagtcg tgatggaggt ttaccctgga ttaggaggga      5340
     gtcgtaccgc caagattcgt acgactcatg gagagtttgt gcgcccgttc cagcgactat      5400
     ttcccttgga ggtgaaggag atcccaaacg cgaagctgga acgaaaggct mtcgaggata      5460
     ccagcggcsa aataattttg gaagacgatg ctgaggttcc agaggagatt ttggaggatg      5520
     gaccggagcc cattattatc agcaagtttg gacggcgagt caagaagccg actcgtttgg      5580
     ggataaaata actwtatttt atttcatttt ttgttagtta atactaattt tcaagtagtt      5640
     taaaaattag tatggtggga gaa                                              5663
//
ID   BEL-27_SiCu-LTR repbase;    DNA;    INV; 500 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-500
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5024-5024 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 500 BP; 135 A; 90 C; 94 G; 181 T; 0 other;
     tgacaggaat agtagtagat ttctttgttg tttcgttttg ccccttattg agggaatttc        60
     cgtgtaattt acaaatggca ccaggccgtc tgtggcttgc tgccaacaac accgaggcgg       120
     tgacgaaaag gccaacggcc aatttttact tacacacttt tttgtgagct tgcattgctc       180
     aactcattct ctcatcatca ctctgctaaa acttttgtgg acggatctac tccgtaataa       240
     atttcttgta atattaattg gtaaaagagt tgtcaataaa taattaattg tcattaatta       300
     ttatactgtg gtcattttgt ggaacattta tttggggcta gtttattgtg cattcctgat       360
     tatcggaaac attaaacttt agccaatcag tagtcattag tcagtcatca ctgtcatttt       420
     agaatcctgg tttttacgaa caattattgg atcttctgaa cgtagttatt tttgatgctc       480
     gagaaagtct agtccgaaca                                                   500
//
ID   BEL-27_SpEx-I repbase;    DNA;    INV; 5944 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5944
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6907-6907 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           740..5914
FT                 /product="BEL-27_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSDHSDDLEMLKKKRSALKAKLTIFKNYLKVLASSSS
FT                 SSLSELQRLELEGRFSRFQSLYDDFDVLQTDIESLLDDPEDEFKTRCEFED
FT                 QYHPAVALARSLLIVENGAGIQKETGKAHTNVRLPKIDLPHFDGGVQGWLE
FT                 FKDTYISLIHTNNCNDDIMKFHYLRSCLRGSAALVIKNIDFTSDNYHNAWD
FT                 LLCQRYDNDQLLIHNHVQALLNVQPCLKESSKGLRYIIDITNKNIRALKAL
FT                 KQPTEHWDTLIIIMMSQKLDSATSRYWEEFRNKLSRPPTLNQFIKFIEDQI
FT                 NLLEKLEENNKNNNKHKITENSSNLNKSKSFIVASNIKNKAVNYKCLLCAE
FT                 NHLLFSCETFRSLPIEARIEKVKQFKVCMNCLRSGHNEKACKLYASCKYCK
FT                 GRHNTLLHEDPIRDNTLSVPMPNKENVTFSANLEHNNSNSIVLLSTALVRV
FT                 RGANGAKHSARVLLDNGSTTNFVTSAFSSKLGLSPQATCLAAVTGINNQTS
FT                 YSTQSCNLTLESYSGDYKVELDCLILPEIAKVLPSRFVNFKQIPVPSGLCL
FT                 ADPTFNIPSAIDILIGAETFWNILGQNSIKLGKNQPRLQETKLGWIVSGQV
FT                 HLPNLQSSSHFCNFITDDVNINRFWELDSVPTKSALTREEQACEQHFLKHT
FT                 YRDTDGRFVVTMPLKKDPSALGDSLQMAISRFLSIERRFQRDPIFKERYLE
FT                 FMRDYEQLGHMTEECLLRDFSVSSDKNASYFIPHHGVIRESSTTTKLRTVF
FT                 DASATTTTGISLNSIQMVGPVVQDDLISIVLRFRQHKYAISGDIEKMYRSV
FT                 YLNNDQRSLQRIIFRADSKEQLKVYRLNTVTYGMASAPYLATKCLTSLASS
FT                 ASSEDAKRAIKCDFYVDDYLGGSDSIDGAIEICRDVINTLSGAKFNLRKFR
FT                 SNDPRILAQITHQNDSSSHDNRLEFNASFKTLGLCWLCDTDSLSFSININN
FT                 NPNTKITKRHILSIIGQIFDPLGLIGPCVVEAKIIMQTLWVGKHDWDDVVP
FT                 QEIRKRWFSFASTLSCLNELKIPRFISCSDAIQNEIHVFSDASEKAYGACL
FT                 YVRSIDSSGNVYVKLLTSKNRVAPIKPITVPRLELCGALLATRLCTKVRDS
FT                 LTMHIDNIYMWCDSTIVLAWLHTSCHNLKPFVRNRVIEIQECTVDYTWGYV
FT                 PSRDNPADLVSRGLKADAISTSSLWWSGPSYLLKSKKEWPQRPNLEKHNLP
FT                 DIISCVVSTNDNGNLIHANSNQLSSSIIINLISKYSKFIYLQRIVAYVLRA
FT                 IYNFKNKATRRVDFLSSEELNNSLNCILRNGQLEMFPEEYSLLKSGKPLPH
FT                 NNRLTSLTPFVDSYDILRVGGRLNNSPYDFNIKHPVLLCSKHTLTKLIFLN
FT                 EHLKLLHAGPQLLLASIRQQYWPLGGRNLSKSIVKKCVKCFRFRAQNVQPI
FT                 MGQLPKCRTDLQFPFLNCSVDGAGPIMIADRKGRGCRLIKSYLCIFVCLAV
FT                 KAVHIELVTALTTDAYMAALKRFVSRRGKPRSIWSDNGTNFVGASNEINNF
FT                 LSNSSLASDIAQEGIEFHFSPPYSPHFNGIAEAAVKAAKAHLKKVLTLTHL
FT                 TFEEMTTCLYQIEAILNSRPLTPVSSDPLDLTVLTPAHFLIGRPLIAVPHP
FT                 QVTEGNITQLERYQRVELIRQHFWKRFCNEYISVLQQKTKWKASTGELQPG
FT                 VLVLVRDKALPPLLWPLGRIIKVHRGGDGITRVAEVKMKTGTVVRGFNSIC
FT                 PLPLQ"
XX
SQ   Sequence 5944 BP; 1785 A; 1228 C; 1129 G; 1800 T; 2 other;
     tggtcctata gcttttatag taaagctcac cggaataaca aattataata agtgacgtcg        60
     acttattggt ggacattgga ctcggcaaga acaacgcgta caggtgttcg cttcgccacg       120
     ttcctgctgc acggaggctg gagaatcgac ctagtggagc ggattcggta aaacagtgag       180
     ttcgttccaa ttaaatttcc cttatttact tctcacaaga tcaacacttg ctgtcattat       240
     tttgcccaaa tttcgcctca atttgtgtaa tcaagtgctt taaaacctaa tttcagtaaa       300
     ttataatata tctgataata actacacctt agtttactta attttccaat cttttgcact       360
     tcttgcgaac gtgcacgtgt cgtaccgcgt ggcgtgtcac cgccttacat gcttcagatt       420
     ggctaataca ggattaatta tatgcttggg waataagaat agcgtwaaat aaattgggga       480
     atgcatacga tatttttttt gctatagtgc ttgtatttta attacttcct tttttccttt       540
     gataataaag tatcagtcat tatattgcta tattacttaa aacgactcag ctaatcatta       600
     gttactatac atataatatt taagtataat aaacaagcga taagacgtcg cacgattgca       660
     ttcattgttc atttgcttaa aaaccggttt ccgtacaaga tcctacgttt cttaccgata       720
     aaaaacagct gtttacacaa tgagtgacca tagcgatgac ctagaaatgc ttaaaaagaa       780
     acgtagtgcg cttaaagcta aacttacaat atttaaaaac tatttaaaag tgctagccag       840
     ttcttcttct tctagcttgt ctgaattaca acgtctcgag ttggaaggac gttttagccg       900
     tttccaatca ttatacgacg acttcgatgt attacagacg gatatcgagt cgctgttgga       960
     tgatcccgag gacgaattca aaacgcggtg cgagttcgag gaccagtatc atccagccgt      1020
     ggctttggca cggagtttac ttattgttga gaatggcgcg ggcattcaaa aggaaacagg      1080
     taaggcacat acaaatgtcc gtctacctaa aattgatttg ccgcactttg acggtggtgt      1140
     tcagggttgg cttgagttca aagacactta catttctcta attcatacca ataattgtaa      1200
     tgacgacatc atgaaatttc actacctacg ttcttgttta cgcggcagtg ccgctttagt      1260
     aattaaaaac attgacttca ctagcgataa ctatcataat gcatgggacc tgttatgtca      1320
     gcggtatgac aatgatcagc tgctcataca taaccatgtc caagcgttgc tcaacgttca      1380
     gccatgctta aaggaatcta gcaaaggttt gcgttacata attgatatta ctaataagaa      1440
     tatacgcgca ctaaaagcat taaaacaacc aactgaacac tgggacacgc ttattataat      1500
     tatgatgtct cagaaacttg attctgcaac aagtcggtac tgggaagaat ttcgtaataa      1560
     attatctcga ccccctactt taaatcaatt tattaaattt attgaggatc aaataaactt      1620
     attagaaaaa ttagaagaaa ataataaaaa caataacaag cacaaaatta cagaaaatag      1680
     ttctaatcta aataaatcta aaagttttat tgtggcatca aatattaaaa acaaagcagt      1740
     aaattataaa tgtctattat gtgctgaaaa tcatttactt ttcagctgtg aaacatttag      1800
     gagtttgcct attgaagccc gaattgaaaa ggtaaaacag ttcaaagtct gcatgaactg      1860
     tctacgttca ggtcataatg aaaaggcttg taagctttat gcatcttgca aatattgtaa      1920
     gggacgtcat aacactttat tgcatgagga ccctatacgt gataacacgc tttcagttcc      1980
     catgccaaat aaagaaaacg ttaccttttc agccaatttg gaacataaca attcaaattc      2040
     aattgtatta ctttccacag ccttggtgag agtgcgtggt gcaaatggcg ctaagcactc      2100
     cgctcgagtg ttactggaca acggtagtac tacaaatttt gtaacttccg ctttctcatc      2160
     taagctgggc ttgtcaccac aagctacttg cctggcggca gtcacaggta taaacaatca      2220
     gacctcttac agtacacagt cttgtaatct cactcttgag tcttatagcg gtgactataa      2280
     ggtcgaatta gattgtctca ttttacctga gatcgctaaa gttttgccat cacggttcgt      2340
     taactttaaa caaataccgg ttccttccgg attgtgtctc gcggacccta cctttaatat      2400
     accatcagcc atcgatatat taatcggtgc tgaaacattt tggaacatcc taggacaaaa      2460
     ttcaattaag ttaggcaaaa atcaacctag gcttcaggaa actaagctag ggtggattgt      2520
     ctctggtcag gtacatttac caaatctaca atcttcgtct cacttctgta atttcattac      2580
     agacgatgtc aatattaacc ggttttggga gttggactcg gtgcctacta agagtgcttt      2640
     gaccagagag gaacaggctt gcgaacagca ttttcttaaa catacttatc gcgacactga      2700
     tgggcgtttt gtggttacga tgcctcttaa aaaagaccct agtgcattag gcgactcttt      2760
     acaaatggct attagtcgtt ttctatcaat agagcgacgc tttcaacgtg atccaatatt      2820
     taaagaacgt tacttagaat tcatgcgcga ttatgaacaa ttggggcaca tgacggagga      2880
     atgtctatta cgagactttt ctgtatcctc tgataaaaat gctagttatt ttatacccca      2940
     tcacggtgtc attcgcgagt ctagcactac gacaaagttg cgtacagtat ttgatgcgtc      3000
     agctaccaca actacgggca tatcactaaa ctcaattcaa atggtgggcc cagtggtaca      3060
     agacgatctg atttctattg tattacgctt ccgccaacat aaatacgcaa tttcaggcga      3120
     tatagaaaaa atgtacaggt cagtatattt aaataatgat cagcggtctc tacagcgtat      3180
     tatattccgt gctgattcta aagagcagct taaagtttac cgtcttaata cagtgacata      3240
     tggtatggca tcagcaccat acttagccac taaatgccta actagtttgg cttcctcagc      3300
     ttcttctgaa gatgctaagc gtgctattaa atgcgacttt tacgttgacg actatttggg      3360
     cggaagcgac tctattgacg gggcaataga gatatgtagg gacgttatca atactctatc      3420
     aggggctaaa tttaacttac ggaaattcag gtcaaacgat cctcgtattc ttgctcaaat      3480
     tactcatcag aacgactctt cttctcatga taacagatta gagttcaacg cctcctttaa      3540
     aactttgggc ctttgttggt tatgtgacac tgactcactt tcattttcaa taaatattaa      3600
     taataatcct aatacaaaaa ttacaaaacg acatatctta tctattatcg gtcaaatttt      3660
     cgacccactg ggtctgatag gtccgtgtgt agtcgaggca aaaattataa tgcaaacgct      3720
     ttgggtaggg aagcatgatt gggacgatgt tgttcctcaa gaaattcgca aacgttggtt      3780
     ctctttcgca agtactttat cttgtcttaa cgagctaaaa atacctagat ttatttcttg      3840
     cagtgacgct atacaaaacg aaattcacgt cttttccgac gcctcagaga aggcgtatgg      3900
     cgcgtgcttg tacgttcgtt cgattgacag ttccggcaat gtctatgtta aacttctcac      3960
     ttcaaaaaat cgtgttgcac ctatcaaacc aattacagtg cctcgactcg agctctgtgg      4020
     agcgttatta gcgacaagat tgtgtaccaa agttcgtgac tctcttacaa tgcacataga      4080
     caacatttat atgtggtgtg actccactat agtcttggct tggctgcata cctcatgtca      4140
     caatcttaaa ccatttgtgc gtaacagagt cattgaaata caagagtgta ctgttgatta      4200
     tacctggggc tacgtgccgt caagggacaa cccagcggat cttgtttccc gcgggctgaa      4260
     ggctgatgct atcagcacca gttctttgtg gtggtcaggt ccttcttact tattaaaatc      4320
     caagaaggaa tggccacaaa ggcctaatct cgagaaacac aatctaccag acattattag      4380
     ttgtgtagtt agtaccaatg ataacggtaa cctgattcac gctaattcta atcaacttag      4440
     ttcctcaata ataattaatc taatttcaaa gtattcaaaa ttcatttatt tacaaagaat      4500
     agttgcttat gtacttagag ctatttataa ttttaaaaat aaagcaacta gacgtgtcga      4560
     ctttcttagt tcagaggaat taaacaattc attaaattgc attttacgca atggtcaact      4620
     tgagatgttt cctgaagaat attctctttt gaaatcagga aaacctttac ctcataataa      4680
     tcgtcttact tcattaactc catttgtgga ttcttatgac attttgcgcg ttggtggtag      4740
     attaaataat tcaccctatg attttaatat aaaacatccc gtgttactat gcagcaaaca      4800
     cactttaact aaattaatat ttcttaatga acatctcaag ctactacacg caggaccaca      4860
     gcttttgttg gcaagtattc gacagcaata ctggccttta ggtgggagaa atttgtcgaa      4920
     atctatagtt aaaaaatgtg taaaatgttt tagatttagg gctcaaaatg ttcaacccat      4980
     catgggtcaa ttacctaaat gtcgtaccga tttgcaattt ccttttctga actgtagtgt      5040
     cgatggagcc gggccaatca tgatcgctga tcgcaaagga cgaggatgta gactgattaa      5100
     atcatactta tgcatttttg tgtgccttgc agtgaaagcg gttcatatcg aactggtcac      5160
     agcgttaacg acagacgctt acatggctgc tctaaagcgg tttgtatcgc gtcgaggaaa      5220
     accgcgtagc atttggtccg acaacggcac gaacttcgtt ggagcctcta atgaaataaa      5280
     taattttctt tccaactcaa gccttgcttc cgacatagct caggagggca tagaatttca      5340
     tttttcacct ccttactctc ctcactttaa tgggatagcg gaggccgctg tcaaagccgc      5400
     taaagcccat ctaaaaaagg tcctcactct tactcatctc accttcgaag agatgacaac      5460
     ttgtttatat caaattgagg ctattctcaa ttcgcgtcca ttaaccccag tttcctctga      5520
     tcctttagat ttaacagtcc taacaccagc ccatttttta attggacgac cacttattgc      5580
     tgttccgcat ccacaggtca ctgagggcaa cattacgcag ctggagcgct accaacgcgt      5640
     ggagcttata cgccaacact tttggaaacg cttttgtaat gagtacattt ctgtgctaca      5700
     gcaaaaaacc aaatggaagg cttccacagg cgagttgcag ccaggagttc tggttcttgt      5760
     cagggacaag gcactgccgc cacttctgtg gccactcggc cgcatcatca aggtgcatcg      5820
     aggcggcgat ggcatcacac gggtggcaga ggtcaagatg aagacgggaa cagtcgtccg      5880
     aggcttcaac tccatttgcc ccttaccact tcagtgaagt ataaaaactt caccccgggc      5940
     agta                                                                   5944
//
ID   BEL-27_SpEx-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-27_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-230
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6935-6935 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 230 BP; 61 A; 65 C; 45 G; 59 T; 0 other;
     tgtcgatgca catatcgacc atcgacatca cctacggccg ccagagggca gcacgggccg        60
     ggcgagacgc gcgggcgagg ggtcctaccg tgtccgccat cggcactccg cacagcacct       120
     tcactaacga cgctagctta ttatatattt ttgtacctat aatcagtatt cctattataa       180
     atttacagtc cacttaaata tatcttttat ttaaactaca gaccttaaca                  230
//
ID   BEL-280_AA-I repbase;    DNA;    INV; 6118 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-280_AA_;
KW   BEL-280_AA-LTR; BEL-280_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6118
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6118
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2568-2568 (2012).
XX
DR   [2] (Consensus)
XX
CC   'ATAGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(24..2051,1987..6051)
FT                 /product="BEL-280_AA-I_1p"
FT                 /translation="MSSRSNLRPELRTGATKTRSVAKLGGSGGHSENQEED
FT                 GAYGGVVPVVVTGVPSPEQQEGNTLPGRACKVCGGPDTDEMVQCDVCNKWH
FT                 HFVCVGVTKEIEDKSWSCAVCHTVTRALQILSFSNKTPKQAENAAGSKSSK
FT                 PIIQSEKQHTLHLPKGSSNDGTARKSSQPKSVPERPSKGTFSVVSRGSSKS
FT                 SLLKLELQKLEEERALEQKEAEKQRSYLNKKYDILKQLTNQSDVSSVADSM
FT                 GRVNAWVDDVNGCERRESVAEPPVENFSPRGCSTPNRSNVDRGSQAAYEQS
FT                 VLVNPTNHHIRGTRRSIHVQNLGDTSFLQPSRVHTVPPNCDAASSVSQISS
FT                 SRHRNVQRDPNSIGPTRAQLAARQAISKDLPVFSGNPEDWPIFLSSFNSTT
FT                 SMCGFTNDENIIRLQRSLKGRAYEAVKSQLMHPANVPGVMSILKMMFGQPE
FT                 AIVHSLVAKINALPALREDKLETLVDFAVSVKNFCATVDACGLEDHLYNVS
FT                 LLQQLVAKLPPTLKLDWACYRLSMPRVNLATFGNFLYSLAEAASTVVMPTI
FT                 VADHKQTRNDSRPSKTGNAFLNAHLESPSEISASKPFTPSSASASMHLRTV
FT                 PTVSVRYVEVVAKRQISANSFLNFPVMRAGLPCTNLDCVVDASGVIMETVT
FT                 RKNVVRMVVPSSIMYCYTTISKKLNKPGWLYLQASCTATQLSAKSSTSHKA
FT                 SSTVPQTTTSDASQLEANRVHGCNTHRTKTSAVLFRYLPVVLKGRTKTVXT
FT                 YAFFDEGSELSLLDESLAKMLELDGEVSPLCLRWTGGKERNEENSRMVNVE
FT                 IEGLHNQAKSFNLNDVRTVNELLLPHQTVDMKELSQLYPHLRGLPIDSYQS
FT                 AQPRILIGLKHAYVGLVLQSREGQMNQPIASKTRLGWTVYGGCVDGVPNVV
FT                 QCAFHVQQCSDKSDEALHLAMKEYFSLDSLGVMKPANLLLSAEDQRAEILL
FT                 RTLTKFKDGRYETGLLWRYDDVRLPDNSSMALRRHHSLVRRMEKDPQLANT
FT                 LNKKIADYLEKGYIRLLTKDELNQQVPRIWYLPIFPVTNPNKPGKIRIVWD
FT                 AAATAFGKSLNSTLLKGPDQLCSLFSILLQFREHRVGLTGDIREMFHQVNI
FT                 REEDQHCQRFLWTDENGNIQTFVMCVMTFGACCSPSCAQYVKNVNAERHSQ
FT                 EYPRATEVIIKKHYVDDMLVSVENEQDAIQLANEVKLVHDNGGFEIRNWIS
FT                 NSSHVLKALQGGNVPEKNLALSSELATEKVLGMWWSTSTDTFCFKVGWNRH
FT                 DKELLNGQRCPTKREILRVLMTIFDPLGLIAHFLMFLKILLQEVWRSGVQW
FT                 DDPIQAASYDKWKQWLQVLPQVEQTRIPRCFRIHTSLDVAYDAQLHVFVDA
FT                 SENGFSAAVYLRFLQASVVECTLVAAKTRVAPLKFTSIPKLELQAAVVGTR
FT                 LAKTISESLSIPISRRVFWSDSRDVICWINSDHRRYSQFVAFRVSEILETT
FT                 EINDWRWVPTKHNVADDATKWVGWPDLSSDSRWFRGPDFLWHPETEWPQAS
FT                 LKGSSTSTELRPNLLTHFAVPEPMMNVSNYSNWKRLLRVTAFVFRFTANCQ
FT                 RKLQKLPSTVGSLTSKELKTAEAYLLRLAQADSFPEEISLLRRVQSVSNEP
FT                 STPLPKRSALYQLSPFLDTQGILRMRGRTRLCEYATEDSXNPIILQRDHHI
FT                 TTLIIAHYHERYHHRNHETIINELRQKYCISRLRVCYAKIRRRCQRCQNER
FT                 AIPRPPIMADLPPARLAAFSRPFTHVGVDYFGPINVLVGRRIEKRWGMLAT
FT                 CLTIRAVHIETVHTLNTASCIMALRNFIARRGTPRVIYSDRGTNFVGASRE
FT                 LRDVEAAINEPEIMKEFVSTETEWVFNPPAAPHMGGSWERLIRTVKNNLMS
FT                 ISPSRTLRDEELKNFLIEVENTINSRPLTHVPIDADSEPALTPNHFLLGSS
FT                 NGTKPLTIINDSGKVLKEAYTTSQVLANQFWKRWITEYLPEITRRTKWFSY
FT                 TKPISIGDIVVIVDPQLPRNCWPKGKVIWVKTAQDGQVRSATVRTSCGVTS
FT                 ELRPS"
XX
SQ   Sequence 6118 BP; 1659 A; 1518 C; 1518 G; 1417 T; 6 other;
     gcttataaat ttcgtttatc gcgatgtcta gccgtagcaa tctcagaccg gagctgagaa        60
     ccggtgcaac gaaaacgcgt tcggttgcaa aactcggtgg tagtggtggt catagtgaga       120
     accaggaaga agatggtgct tatggtggtg ttgtgccagt ggtggtcaca ggggtcccgt       180
     cgccagagca acaagagggc aacactttgc cggggcgagc ttgtaaggtg tgcggtgggc       240
     cagatactga tgaaatggtt cagtgcgacg tatgcaacaa gtggcatcat ttcgtctgcg       300
     tgggagttac caaggagatt gaagacaaga gttggagctg tgctgtttgt catacagtga       360
     ccagggctct gcaaatcctt tcattctcca acaaaactcc gaagcaagcg gaaaatgcag       420
     ccggaagcaa gtcgtcgaag ccaatcatcc agtcagaaaa acagcacaca ctgcatctcc       480
     cgaagggatc gtccaacgat ggcactgcga ggaaatcttc gcagccgaaa tccgtgccag       540
     agcgcccttc caaggggact ttttcggtgg tgtcacgtgg ttcctctaaa agctccttgc       600
     tgaaactgga actccaaaaa ctagaggagg aacgtgctct ggaacagaaa gaagcggaaa       660
     aacagcgtag ttatctcaac aaaaagtacg atatccttaa gcagctaact aatcaatcgg       720
     atgtatcatc agtggcggat agcatgggtc gagtgaatgc atgggtcgac gatgtaaacg       780
     gttgcgaacg ccgggaatcg gttgctgaac cacccgtcga aaacttctct ccccgcggat       840
     gttcaacacc gaaccgctca aacgtggaca gaggttccca agctgcgtac gagcaatctg       900
     tgttggtcaa ccctaccaac caccacatca gaggtactag gcgatctatt cacgtgcaga       960
     acctcggtga tacatcgttc ctacagccgt ctagagttca tacggttccg ccaaactgcg      1020
     acgcagcatc atctgtaagc cagatttctt catctcgcca tcgcaacgtt caacgagatc      1080
     caaattctat tggacccact cgtgcgcaat tggctgcacg ccaggcaatc tcaaaagacc      1140
     tgccggtttt ctccggaaat ccagaagact ggccgatttt tctgtcgtcg tttaacagta      1200
     ctacatcgat gtgcggtttc acgaatgatg aaaacattat tagattgcag aggagcttga      1260
     aaggtcgagc gtacgaagca gtgaagagtc agctgatgca tccagcgaat gtgcctgggg      1320
     tgatgagcat tctgaagatg atgttcggcc agcctgaggc cattgtgcat tcccttgtag      1380
     ccaagatcaa cgcgttacca gccctaagag aggacaagct agagactctt gtagattttg      1440
     cagtaagcgt caagaacttt tgtgcaacgg tagatgcctg cggcttagag gaccacttat      1500
     acaacgtgtc gctcttacag caactagtag ccaagcttcc cccaacattg aagctggatt      1560
     gggcgtgtta ccgtttatct atgcctcgag tcaacctagc gacattcggg aatttcctct      1620
     attctcttgc tgaggccgcc agtacagtcg ttatgcctac gatcgtcgcg gatcataaac      1680
     agactcgcaa tgattctcgc ccatcgaaaa caggaaatgc cttcttgaat gcgcacttag      1740
     agtctccaag cgaaatatca gcatcgaaac cctttacacc gagcagtgcc tcagcgtcga      1800
     tgcacctaag gaccgtgcca acagtgagtg tccgatatgt agaagtagtt gcaaagcggc      1860
     agataagtgc aaacagtttc ttgaactttc ccgtgatgcg cgctgggcta ccgtgcacga      1920
     acttggattg tgtcgtagat gcctccggcg tcataatgga aactgtaaca cgaaagaatg      1980
     tggtaaggat ggttgtacct tcaagcatca tgtactgcta cacaactatc agcaaaaagc      2040
     tcaacaagcc ataaagcttc aagtaccgta ccgcaaacca cgacctctga tgcttcccag      2100
     ctggaagcta accgagtcca cggatgtaat actcatcgca caaaaacttc ggctgttctt      2160
     tttcgatacc tgcccgtggt gctgaaaggc cgtaccaaaa cggtcmaaac atatgccttt      2220
     tttgatgaag gttcagaact tagcttgctc gatgaaagtc tggcgaagat gttggagctg      2280
     gatggtgagg tcagcccgct atgcctaaga tggactggtg ggaaagagcg caacgaggaa      2340
     aactccagga tggtaaacgt agagatagaa ggactgcaca atcaggcgaa atcgttcaac      2400
     ctaaacgacg tgaggacggt taatgaatta cttcttccgc atcaaacagt cgatatgaag      2460
     gaactgtctc agctgtaccc acaccttcga gggcttccaa tcgattccta ccaatcagca      2520
     caaccacgta tactaatagg cctaaaacac gcgtatgttg gtttagtctt gcaaagcaga      2580
     gagggtcaaa tgaatcaacc aattgcgtcg aagactcgat tgggatggac tgtgtatgga      2640
     ggctgtgtgg atggcgtgcc caacgtagta caatgtgcgt tccatgtaca acagtgtagc      2700
     gacaagtcgg atgaagctct gcatctcgcc atgaaagaat actttagctt ggacagtctc      2760
     ggagtcatga agccagcgaa tttgcttcta tctgctgaag atcaacgcgc cgagattctc      2820
     ttacgaactc tcacgaaatt caaggatggt cgatatgaaa ctggactact ctggcgctac      2880
     gacgacgtgc gtcttcccga taatagttct atggctctac gccgacatca ttcccttgta      2940
     aggcgtatgg agaaagatcc acagttggcg aatacactaa ataagaaaat agctgactat      3000
     ttggagaagg gatacatccg tctgctcacc aaagacgagc taaaccaaca ggtgccacgt      3060
     atttggtatc tgccgatctt tccggttacg aatccaaata aacccgggaa gataaggatt      3120
     gtttgggacg ctgctgcgac cgctttcgga aaatccctca actccacact tctgaagggt      3180
     ccggaccagt tgtgttcttt gttctccata cttctccagt tccgcgagca tcgtgttggc      3240
     ctaacagggg acatccgaga gatgttccac caggtgaata tccgcgagga agaccagcat      3300
     tgccaacgct tcctctggac ggacgaaaat gggaacatcc aaacattcgt gatgtgcgtg      3360
     atgactttcg gagcctgctg ttcaccgagc tgcgctcaat atgttaaaaa cgttaacgca      3420
     gagcgccact cccaggagta ccctagagca acagaagtca tcatcaagaa gcattatgtg      3480
     gatgacatgc tcgtgagtgt cgagaatgaa caggatgcca ttcaactggc gaatgaggtg      3540
     aaattggtac acgataacgg tgggtttgag atacgcaact ggatcagtaa ctccagccac      3600
     gttttgaagg cgctgcaagg gggaaatgtt ccagagaaaa atctagcttt atcgtcggag      3660
     ttagccactg aaaaggtact aggaatgtgg tggtccactt ccacagacac tttctgcttc      3720
     aaggttgggt ggaaccgaca cgacaaggaa cttttgaatg gacagcgttg tccgacgaaa      3780
     agagaaatcc ttcgagtact catgacgatc ttcgaccctt tagggttgat cgcccacttc      3840
     ctcatgttcc taaagattct gctacaggaa gtttggcgct ctggagttca atgggacgat      3900
     ccgatccaag ctgcatcgta tgataaatgg aagcaatggc tgcaagttct tcctcaagtt      3960
     gagcaaacgc gtattccaag gtgttttcga atccacacgt ctctcgacgt tgcctatgat      4020
     gcgcaattgc atgtatttgt cgacgcgagc gaaaatgggt tctctgctgc tgtatatcta      4080
     cggtttcttc aggctagcgt tgtcgaatgc acccttgttg cggctaaaac gcgagtggct      4140
     ccgttaaaat tcacgtctat cccgaaactt gagcttcaag cagctgttgt cggcactaga      4200
     ttggccaaaa ctatttccga gtctctatca attccaatct caaggcgtgt gttttggtct      4260
     gactcccggg acgtaatatg ttggatcaac tccgaccata ggcgatacag ccagtttgtg      4320
     gcgtttagag tgagcgagat cctcgaaacc accgaaatca acgattggcg ctgggtaccc      4380
     accaaacata atgtagcaga cgacgccacc aagtgggttg gctggccgga cctgagttca      4440
     gatagcagat ggttcagagg gcctgatttc ctgtggcacc ctgagacaga atggccacaa      4500
     gcttctttga aaggttcttc aacgtctaca gagctccgcc caaatctgct gacacacttt      4560
     gcggttccgg agccaatgat gaacgtgtct aactactcga attggaagcg acttctccgt      4620
     gtgacagctt tcgtattccg gtttactgcw aactgccaac gcaagctaca gaaactacca      4680
     tccactgttg gttcgctcac cagtaaagaa cttaaaacgg ctgaagctta tttgctgcgm      4740
     cttgcgcaag ctgattcatt tcctgaagag atttcccttc tacgaagagt acaaagcgta      4800
     tcgaacgaac catcaacacc attgcccaag agaagcgccc tgtatcaact atcacccttc      4860
     ctggataccc aaggcatcct caggatgcgg ggcaggacgc ggctgtgtga atatgctacc      4920
     gaagactcaa maaatcccat aatacttcag cgtgaccacc acataaccac cttaattatt      4980
     gcacactacc acgaaagata ccaccatcgc aaccatgaaa ccatcattaa cgagttgcgg      5040
     caaaaatatt gcatatcgmg acttcgtgta tgctacgcaa aaatcaggcg gcgatgccag      5100
     agatgccaaa acgaacgtgc cattcctcgt ccaccaatca tggccgatct gcccccggca      5160
     cgattagcag cgttttcacg gcccttcaca catgttggag ttgattactt cggmcccatc      5220
     aacgtattag tcggacgcag aattgaaaag cgctggggaa tgcttgctac gtgcttaacg      5280
     attcgagcgg tccacatcga aaccgtccat accctcaaca cagcctcgtg tatcatggca      5340
     ttacgaaact tcatcgctcg ccgtggcacg ccaagggtga tttatagcga ccgcggcaca      5400
     aacttcgtcg gtgcgagtcg tgagctgcgc gacgtagaag cagctatcaa cgagccggag      5460
     atcatgaagg agtttgtcag cactgagacg gaatgggtgt tcaacccgcc tgcagccccg      5520
     catatgggcg ggagttggga aaggttgatt cgtacggtga agaacaatct gatgtcgatt      5580
     agcccgtccc gcaccctacg agatgaggag ctcaagaact tcttgatcga ggtcgagaac      5640
     accatcaatt ctcgtccgct aactcatgtg ccgatcgatg ccgattccga accagctctc      5700
     actccgaacc acttcttgct cggttcctcg aacggtacga agccgctcac tatcatcaac      5760
     gacagtggga aagtactgaa ggaagcttat accacatcac aggtcttagc caaccagttt      5820
     tggaagcgct ggataactga atatcttcca gagatcacca gaagaacaaa atggtttagc      5880
     tacacaaagc cgatatccat cggcgatatt gtggtcatcg tcgatcccca gttaccgcgc      5940
     aactgttggc caaaaggtaa agtcatctgg gtcaaaacag cacaagacgg tcaagttcgg      6000
     tctgcaacgg tacgtacatc atgtggcgtt acgagcgagc tacgaccaag ctagcagtcc      6060
     tagacgtaag gcgcgatggt gagtaagcct actacgacgt aggcgtaccc ggggggag        6118
//
ID   BEL-280_AA-LTR repbase;    DNA;    INV; 749 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-280_AA_;
KW   BEL-280_AA-I; BEL-280_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-749
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2569-2569 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 749 BP; 266 A; 143 C; 131 G; 209 T; 0 other;
     tgtaagctgc ccctgttaga cagcacgcgc cctttcgtaa gtttgaacgt caactgaata        60
     aaaccaacaa cggccctgga ttagagcgac agtgacaggt gtcataaacc gtgagtagcg       120
     aaaattgaag agagaaacgg atgaatgtag acggcatcaa aacatcctaa gtgaattata       180
     ttatcaaatt tattattcta cctaaattta ttattctaat tgttaaaatc gatataaaat       240
     accaggtaat tagtaatcta ttgaattgaa acctaacatt attgaaaata gtttgtttag       300
     ttcgattagc agtcgaacta ctcgggagca ataagtgaca gtgcgtgcca aacctgaatt       360
     gtagaattcg tgcattgcaa agttggtgag ctgctatttt taccaagact aaatatgtag       420
     aatgtcttct aaaacacaat tataaaacat tcacagccgc cccagatcac ataacgacat       480
     tagacttgac aggactgacg gatatattac taaaacggat attaaacgta agtgacaaat       540
     actaagacta tagaccaata agactcaatg ctacttatgc tgttgcataa cggatttagg       600
     ctacaaaact tatataccat tccatcccat gtattccaaa ctttctcatg taggaaattt       660
     ataatctccc aatacagagt taaaccacat ttgctctgga ggttattaat acgaaagaat       720
     tccccctgcg gtccggtagt caagcaaca                                         749
//
ID   BEL-281_AA-I repbase;    DNA;    INV; 5941 BP.
XX
AC   .
XX
DT   21-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-281_AA_;
KW   BEL-281_AA-LTR; BEL-281_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5941
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5941
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2570-2570 (2012).
XX
DR   [2] (Consensus)
XX
CC   'GTATG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..1439
FT                 /product="BEL-281_AA-I_1p"
FT                 /translation="MSRVGEQSTRGDNDETTSHVESLGSASTSASRRARLQ
FT                 IHLQRLEEEQAIQKKKAALEIEAEYTRKKFEVLEASIADDAASVRSKISRG
FT                 KSDKQIRDWMENLNIPFGDGNQVASNVHGEQEGAVGGEIGNTSPEKDQTKT
FT                 NTLPPGAKMPVYVESLKREEDPGMRPLDQTSTAEDVEDLRRMLEQYKTLYL
FT                 TEKEKNRRQPSVPDRIAGNKGAYPKTVEVSKHFSGRPSLTPKLAGETQNRP
FT                 EYQQQAAAYSATDGISEGVKNDLGQTTEAERGLRQEILTRNTGHGSVTFAA
FT                 DIRNNAIRNEELPVENVRFHDEIRMQPEAPMFPVSLGPTPQQLAARQILPR
FT                 DLPHFAGNPADWPVFISQYTYTTQACGYSDGENMIRLQRCLKGVAWEATRS
FT                 RLILPASVPHVIEALRIRYGRSELLIESLIERVRSTPSPKADKLDTIIEYG
FT                 TKIQTLVTYHRRQFIGSPGQPNPIERFN"
FT   CDS           join(1632..2948,2952..3500,3504..5939)
FT                 /product="BEL-281_AA-I_2p"
FT                 /translation="MHSDAGVTSSTFAKSSMNRPADSSNNFDCSVCKKTGH
FT                 RVRDCTIFKSLSTDERWKRVQSLGLCRTCLYNHGRRSCRISNRCGVNGCLT
FT                 RHHPLLHSNAKDATTSSAPAPLDHHFHNRDIPSLLFRIIPVVLYSGPKKVT
FT                 TYAFLDEGSNISMIERGLAATLKVTGYRHPLCLKWTGNVTREENDSHRVTI
FT                 EISGTDEQAPRYLMSEVGTVESLELPRQSLPIEQLTDKFEHLRGLPIQEYH
FT                 NVTPQLLIGVDNLKLAVPLEVKEGCEGGPTAVKTRLGWCVYGGHRDAGQLS
FT                 VNYHVCECSEGENLDRSLKAYFSLEEVGIKPAGAGISAEEERALRILEQTT
FT                 KRMDQRYESGLLWKYDDFEFPDSYTMAVKRLHCLEQRLAKDPMLNENVRKQ
FT                 IHEYEQKGYAHRASPEELKSGDPRRVWYLPLGAVTNPRKPGKVRLWDASAK
FT                 VDGVSLNSMPPKRPDQMTLLPTVLFRFRQYPVAVSADIKEMFHQVRIRPED
FT                 RHSQRFVYRTDPTSPPETYLMDVATFGSTCSPATAQFVKNANANQFSHECP
FT                 RAVQGIVHNHYVDDYLDSFATIEEAAQVAAQVKAIHKYGGFEIRNWCSNQR
FT                 AVLEQLGEVEQQTIIDLNSGLEKQERVLGILWDTRADEFRFNTSMPEDIAQ
FT                 LRENNIRPTKRQLARCVMSFFDPQGFLAPYLVFGKVLLQDTWREGTGWDEH
FT                 ICDETFERWKQWMNVLDSIEGVKIPRCYFSSGDLSTLEIHTFVDASETAYS
FT                 CVSYFRITNAYGPAKVAFVAAKTKVAPLKPVTIPRLELMACVLGVRLAKYV
FT                 VDGHTLPVRKHFFWSDSEVAMSWINADPRKYRPFVAFRVGEILEKSNREQW
FT                 CWVPSKLNPADEATKWGAGPYFNKNSIWYSGPVDFLSYPAHQWSPKKASGM
FT                 VTDEIRACYAHRKLQVPEQLLDVERFSTWKKMQRVMAYVCRFLNNCRSSVK
FT                 GKERKIGNLTQPEYQRAEECLFRAVQWESYADELATLSNNERLPVEERQPL
FT                 EKNSVLHKISPMLDAAGVLRMDSRISAAQHVPPEMKFPIILPKRHRLTMLV
FT                 LKDLHRKLLHANNETVVNEVRQRNYIAQLRTQVRQVSNQCQLCKIRRAQPA
FT                 VPRMAALPYARMSTYVRPFTYCGLDYFGPLLVKVNRSHVKRWVAIFTCLTI
FT                 RAIHVEVIHSLTTESCIKGVRRFICRRGSPAEIYSDDATCFQGADRLLREQ
FT                 INKGLAAEFTSTETEWKFISPGTPHMGGAWERMVRSVKVALTSIPGTQKLD
FT                 DESLMTFLAEAEAIVNCRPLTYLPLDLMEQEALTPNHFLLRSSSGVRLPMV
FT                 STAEEVSLLKGSWTAIQKQLDLFWRRWTREYLPTLTKRTKWFDEVKPIQPG
FT                 DLVLIIDDTKRNGWVRGRVLKVLTAADGRVRQAIVQTAGGAPVRKPTSKLA
FT                 VLDVSKDGGTKDIDGFHRGE"
XX
SQ   Sequence 5941 BP; 1728 A; 1375 C; 1498 G; 1340 T; 0 other;
     atttcttcaa gaatttcatc atgagtcgag tgggagagca atcaacccga ggggacaatg        60
     atgaaaccac cagccacgta gaaagcttgg gctcagcctc taccagtgct agtaggcgag       120
     ccaggcttca aatacattta cagcggctcg aagaggagca agccatccag aagaaaaagg       180
     cagcactcga aatcgaagca gaatatacca ggaagaagtt cgaggttctg gaggcgtcta       240
     tagcggacga tgcagcgagc gtccgcagca aaattagtag aggaaaatct gacaagcaga       300
     tacgagattg gatggaaaac ctcaacattc catttggtga cggcaatcaa gttgcctcaa       360
     acgtccacgg agagcaggaa ggcgcggtcg gtggggagat tggaaataca agtcccgaga       420
     aggatcaaac taagaccaac actctacctc caggagcaaa aatgccagtg tacgtcgaaa       480
     gcttgaagag agaggaagac ccaggaatgc gcccgttaga ccagacctcg accgccgaag       540
     acgtagagga cttacgacga atgcttgagc agtacaagac gctctatctc acagagaagg       600
     agaaaaaccg acggcaacca tcggtaccgg accggatcgc cggaaacaaa ggagcttatc       660
     cgaaaactgt ggaagtttcc aagcacttca gcggtcgtcc ttcattaact ccgaaactag       720
     caggagaaac tcagaatcgt cccgaatacc aacagcaagc ggcagcgtac tcagcaactg       780
     atggaattag cgagggcgtc aaaaacgacc tagggcaaac tactgaagct gaacgtggat       840
     taaggcaaga aatcttaacc cgcaacaccg gtcacggcag cgtaacattt gccgcagaca       900
     ttcggaacaa tgcaatccgc aatgaagagc tgcctgtcga aaatgtccgc tttcatgacg       960
     aaattcggat gcagccagaa gctcccatgt ttccggtatc actcggaccc acacctcaac      1020
     aacttgctgc acgacaaatt ttgccacgtg acttgccaca cttcgctggg aatccggcag      1080
     attggccggt gtttataagc cagtacacct atacaacgca agcttgtgga tacagtgacg      1140
     gcgagaacat gattcggttg cagcgctgtt tgaaaggtgt agcctgggag gctactcgaa      1200
     gtcgcctaat tctgcctgct tctgtacccc atgtgattga agcactccgc atacgctatg      1260
     gacgatctga actgctgata gagtcgctga tcgagagagt tagaagtacg ccgagtccca      1320
     aggctgataa gctggacacc ataatcgagt atggaacaaa aattcaaact ctggtcacat      1380
     atcaccgccg ccaatttatt ggatcacctg ggcaacccaa ccctattgaa agatttaatt      1440
     gagaagcttc ctgcagagta caaaatgcga tgggcatcgt accggaagaa tcgacctctg      1500
     gttaatcttc aaactttcgg cgagtatatg gaagaagtcg tcgctgatgc gtgcagcgta      1560
     tcgtcttatg gggggagtga aattgaacga ttaacgaaac gcgaaaagga aaggcacccg      1620
     acaggacctt tatgcattcc gatgctgggg taactagcag tacatttgcg aagagtagca      1680
     tgaatcgacc agcagattcc agcaacaatt ttgattgttc ggtctgtaag aaaactggac      1740
     atcgtgtgag ggactgtacg atcttcaaat cactatcgac cgatgaacgg tggaaaagag      1800
     ttcaaagcct cggcctttgt cgcacctgct tgtacaacca tggccgacgc tcgtgcagaa      1860
     tcagcaacag atgtggagtg aatggttgct taacacgtca ccatccacta cttcactcca      1920
     acgcgaagga tgcaacgact tccagtgcac cggcaccact tgatcaccat ttccacaaca      1980
     gagacattcc atctttgttg ttccgtatta ttcctgtcgt tttgtacagt ggaccaaaga      2040
     aagtcactac atacgccttc ctcgatgaag gctccaatat ttcgatgatc gagcggggat      2100
     tggcagcgac gcttaaagtg acgggctacc gacatccact gtgtctcaaa tggactggta      2160
     atgtaacaag agaagagaat gattcgcatc gagtaacaat agaaatttct ggcactgatg      2220
     aacaagcacc gaggtaccta atgtcagagg taggaactgt ggagtcgctc gaattgccca      2280
     ggcaaagttt gccgatcgag cagttaactg ataaatttga acatctgcga ggccttccca      2340
     tacaagagta ccacaacgtg acaccgcagt tgctaatcgg tgtcgataac ttgaagttag      2400
     cagttcctct agaggtaaag gaaggatgcg aaggtggtcc aacagccgtc aagacaaggc      2460
     ttggttggtg cgtatacgga ggccatcgtg atgcaggaca actatcggtt aactaccatg      2520
     tttgcgaatg ttccgaaggt gagaatttgg accgatcgtt gaaggcatat ttttcgctag      2580
     aagaagttgg aataaaaccg gccggcgccg gaatctccgc ggaagaggaa cgtgcgcttc      2640
     gaatcctcga gcaaacaaca aaacggatgg atcaacgtta tgaatcgggt ctgttatgga      2700
     aatacgatga tttcgaattt cccgacagct atactatggc tgtcaaacgg ctgcactgct      2760
     tggagcaaag gctggcgaag gatccaatgc tcaacgagaa tgttcgcaag cagattcatg      2820
     agtacgagca gaaaggctac gcacatcgtg cgtcacccga ggagctcaaa agcggggatc      2880
     ctcgtcgcgt gtggtattta ccgcttggag ctgtaactaa tccaaggaag cccggaaagg      2940
     tgcggctcta atgggacgct tcagcgaagg ttgatggcgt atcattaaat agtatgcctc      3000
     ctaaaaggcc ggatcaaatg acgcttctgc ccacggtgct ctttcgcttt cgacaatatc      3060
     cggtagcggt gagcgccgat attaaagaga tgttccatca ggtacgcatt cggccagaag      3120
     atcgccattc acagcggttt gtgtatcgaa ctgacccaac atcaccgccg gaaacgtacc      3180
     taatggacgt agccaccttc gggtcaactt gctccccggc aacagcgcaa tttgtaaaaa      3240
     acgcaaatgc caaccagttc tctcatgaat gccctagagc tgtgcaagga atcgtccaca      3300
     atcactacgt ggatgattac cttgacagct ttgcaaccat agaagaagct gcccaagttg      3360
     cggcacaggt gaaggcaatc cacaagtacg gtgggtttga gattaggaat tggtgtagta      3420
     accaacgagc cgtcctagaa caacttggag aagtagagca acaaaccatc atcgatttga      3480
     actctggcct agaaaagcaa taggaaaggg ttctcggaat actttgggac actagagcgg      3540
     acgaattccg attcaacacg tcaatgcctg aagacattgc ccaactacga gagaacaata      3600
     tcaggccaac gaaacgacag ctagcaagat gcgtcatgtc gttcttcgac cctcaagggt      3660
     tcctagcgcc gtacttggta ttcgggaaag tgctgttaca ggatacttgg cgcgaaggaa      3720
     caggttggga tgaacatatt tgcgacgaaa catttgaacg atggaagcaa tggatgaatg      3780
     tgctagacag catcgaaggt gtaaaaatcc caagatgcta cttttcttca ggagatcttt      3840
     caacactaga aattcacacg tttgtggatg cgagcgagac agcatattcg tgcgtctcgt      3900
     atttccggat aacgaatgct tatggtccag caaaggtggc ttttgtggca gcaaaaacca      3960
     aggttgcccc attgaaacca gtgaccattc cccgtctgga gcttatggca tgcgttctgg      4020
     gtgtacgatt ggctaaatac gtagtcgatg gacatactct acccgttcga aagcattttt      4080
     tctggagcga ttcagaggtc gcaatgagtt ggataaacgc tgatccccga aagtatcgtc      4140
     catttgttgc tttccgagtg ggcgaaatat tggaaaaatc taatcgtgaa caatggtgct      4200
     gggtcccatc caagctaaat ccagcagacg aggcaacgaa atggggcgca ggaccatact      4260
     ttaataagaa tagcatctgg tacagtggac ccgtagattt tctcagttac cctgcacacc      4320
     agtggtcacc gaaaaaagca tctggaatgg tgacggacga aatacgggcc tgctatgctc      4380
     atcgtaaact acaagttcca gagcaattac tggatgtcga aagattctct acttggaaaa      4440
     agatgcagcg tgtaatggct tatgtttgcc ggttcttgaa caattgtcga tcatcagtca      4500
     aaggcaaaga gcggaaaatt ggtaatctga cacagcctga gtaccaaaga gcagaagaat      4560
     gtttatttcg agcagtacaa tgggaatcgt acgccgacga gttagctaca ctgagcaata      4620
     atgaacggct tcctgttgag gagcgccaac ccttggaaaa aaacagtgtt cttcacaaaa      4680
     tatctccgat gttggacgca gcaggagttt tgcgtatgga tagcagaatc agtgcagctc      4740
     agcatgtgcc acccgaaatg aaattcccga taatcctccc aaaacgacat cgtttgacaa      4800
     tgttggtact gaaggatctt catcgtaaat tattacacgc caacaatgaa actgtcgtca      4860
     acgaagtacg gcaacgaaac tacattgctc agcttcgcac ccaagttcgt caggtgtcca      4920
     atcaatgtca gttgtgcaag atacgtcgag cccaacctgc tgtaccacgg atggccgctc      4980
     taccatatgc taggatgtct acttatgtac gacctttcac atactgtggc ctagactatt      5040
     ttgggcctct attggtgaag gtcaatcgta gtcatgtcaa gcgttgggtg gccatattca      5100
     catgcttaac gatacgtgcg attcatgtgg aagtaatcca ttcactaacc actgaatcgt      5160
     gcatcaaagg tgttcgccga ttcatctgtc gccgaggaag ccctgctgag atctacagcg      5220
     atgacgctac ttgcttccaa ggcgctgatc gtcttcttag agagcagatt aacaaagggc      5280
     ttgctgcaga atttaccagt acagaaactg agtggaaatt catctcccca ggcaccccac      5340
     acatgggagg agcttgggag cgaatggtga ggtccgttaa agtagctttg acctcaattc      5400
     ccggcaccca aaagttggac gatgaatctt taatgacttt tctggcggag gcagaagcca      5460
     tagtcaactg cagaccgcta acatatttgc ctctggactt gatggagcag gaggcattga      5520
     ccccaaatca ttttttattg agaagttctt ctggggttcg tttgccaatg gtatcgacag      5580
     ctgaggaagt atctcttctg aaaggatcgt ggacagcaat tcagaagcaa ctggatttat      5640
     tttggaggcg ttggactaga gaatatctcc caaccctaac taaacgcacg aaatggttcg      5700
     atgaagtcaa acctattcaa cccggtgacc tggttttgat cattgacgat actaagcgca      5760
     acggatgggt acgtggacgc gttcttaaag tattaacagc tgcagatgga cgagtacgcc      5820
     aagctattgt acagaccgcc ggaggtgctc ctgttagaaa acctacttcc aaactggctg      5880
     tcttggacgt atcgaaggat ggtggaacca aggacatcga cgggttccac cggggggagg      5940
     a                                                                      5941
//
ID   BEL-281_AA-LTR repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-281_AA_;
KW   BEL-281_AA-I; BEL-281_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-578
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2571-2571 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 578 BP; 180 A; 117 C; 116 G; 165 T; 0 other;
     tgttgagaaa ctggcaaccc cgccagggcg aacaacagcg agcgaattga tgacggatcg        60
     acagaacgac gagtcatacg tcaagcagag acagaacata gcgcgtgtga ttagttaaaa       120
     ccaaatttaa tattctttgt tattacggcc agaatttaac ttatttggga cctgcgctaa       180
     gtgtagacgg taggagggct tgacgcagat gaggccctgt aatttgtaat gactccattt       240
     agctttttct aggttttagc cgcatatcca gcgaaaggat aaccctcatt tatccctgct       300
     ccaaggccct aataatatat atttagattg ttctggaagt aagcataacc acatttacga       360
     acttagaacc cgttgaattt accgaaatac ttttaatagg tcatttgtac tgccagctta       420
     aagttattgc ttgggaacag gattgaacta taatcgaact gaaattgtaa gttagccatc       480
     cttatactac aaagagattt attcactaaa atataaacct tctagcttga agcaattcgc       540
     tatccaagac tcagtggcgt tttactggtt ccccaaca                               578
//
ID   BEL-282B_AA-LTR repbase;    DNA;    INV; 535 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.01, Created)
DT   04-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-282B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-535
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-535
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 171-171 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 535 BP; 190 A; 101 C; 94 G; 150 T; 0 other;
     tgttggccta ccctattagg ccagcgcgca cgtctatcat tgtggcctct ttaatgcttg        60
     caatcctgca tgcaagactg gggctgtaat ggtatgacag aggagtgaca ggtatgcgac       120
     ctgtcaccgg gtgagtcaac aatgaaaaat aagtattaac tgaactatgc agagttgatt       180
     accttatgct atattattag aaacttaaaa gtagtgtaaa aatcattgaa atcgaactta       240
     aatctagtgg acgaaacttc tacatatcta caaccagaat cggtaaaaat atttaaattt       300
     acagtgaaat tagatcaaaa acattatgct tacatattag gtaacctaaa ttgtgcctcg       360
     ttgccccact tcattgctac acaaaggaca gtttcctact atcaaaaccg gtaaggacta       420
     aacttaacga acatctttga aacatatcaa acatatattg taattactag gattaccact       480
     aatttgcttt gaacggacac aatgttacac aaagggaact aaacgtaagt aaaca            535
//
ID   BEL-282_AA-I repbase;    DNA;    INV; 6125 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-282_AA_;
KW   BEL-282_AA-LTR; BEL-282_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6125
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2572-2572 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5291-5920] - Reverse transcriptase
CC   Positions [5177-5737] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..2201
FT                 /product="BEL-282_AA-I_2p"
FT                 /translation="MSSRGSKSDGKGSKVSGKSDRQRANNSEAVDNVENDD
FT                 VVVVVEEMEKTVDGHTCRRCRGPDTDDMVQCDKCDGWHHYGCVGVTDEVAD
FT                 QSWSCANCKTATWNQRTTAASGGDPAQQESSKTLPSKRTPLPKQASPTGIQ
FT                 GSSSGIPELLKPSAPKGTGKELYVPKLAGLPTIRLDEASSIVSCTSSQRSA
FT                 RNRAKLQLQRLEEERAFEQQQAERRRAAEQLEAEKHREFLERKYKILDELA
FT                 SESGSSRRSGSECSRRRVENWIEKECHLEVAQQFHEPPAQQMRGHQDQRSA
FT                 PQEFEQRQQTPIRMSKYFNPNIQPQSTRIHSAPVRVPRTLANSTILEQIHG
FT                 GTSGHNPTFAELPSNDDAFQLSRSQIAARQAVSRDLPSFSGNPEEWPIFLS
FT                 MLNSTTAMCGYTEEENLVRLQKSLKGKAYEAVKCRLMHPGNVQGIINTLKM
FT                 LYGQPEIIVHTLIGKISALPPIREDRLETLVDFAVNVQNFCATVESCGLEE
FT                 YMYNVTLLHQLVSKLPPSIKLNWAQHRKTQLTANLATFSEWIYSLAEAASS
FT                 VTFPIDPLQSKPIRNDARRKEKEGAYLNAHSETPTKSITSSIPAAESMPNA
FT                 HNRAGERIPVRFAKGSCKSVDKCKRFLEFSRDSKWAVIREFGLCRTCLRQH
FT                 KGLCKAKTMWQKMDAPSGITSCCTMNRSSNSKLSARRPTIQLLRRQQATPI
FT                 WSVIRTKQFLVLSYSATFL"
FT   CDS           1904..6091
FT                 /product="BEL-282_AA-I_1p"
FT                 /translation="MQAFLGVFERFQMGRHPRVRSLPNLSSPTQRIVQGKN
FT                 HVAKDGCSFRHHELLHNEQKFKQQTIGQTADNPVTPPTTSDADLVCNTHQA
FT                 VSSTVLFRYLPVVLTGPAKTVHTFAFLDEGSGATLLDQELADELELGGSPS
FT                 PICLRWTGGTERCEKDSCIVRLQVAGQYEGAAKFTLEEVQTVSELRLPQQT
FT                 LDFDELKQSYRYLEGLPISSYHDARPRILIGTKHAQLGLTLKSREGKFGEP
FT                 IATKTRLGWTICGNLGSGDSLSMFHYSFHVSSLNERFDDDMHQAMKDYFAI
FT                 DSLGINSSSKALLSAEDERAETLLKSLTRFVGDRYETGLLWRYDNVRLPDS
FT                 RPMALRRHRSLEKRMANDPQLAEVLQQKIVDYIVKGYIRKLSQDEVQQQSS
FT                 NAWFLPVFPVTNPNKPGKVRIVWDAAAKVHGVSLNSVLLKGPDLLCSLLGI
FT                 LLRFRQHPIAVTGDIREMFHQVNIRREDQKYQWFYWTDEKGELVIYTMTVM
FT                 TFGACCSPSSAQYVKNVNADRFIGSHPEACEAIAKSHYVDDMLISVATEEE
FT                 AIQISKDVRHIHAQGGFEIRNWISNSKNVMNALQKQSVDNEKSLDLSTELA
FT                 TEKVLGMWWNTTADAFTYKIGWNRYDADLLKGDRRPTKREMLRVLMTIFDP
FT                 IGLIAHFLAYLKVLLQDVWRSGITWDEEIDEDAFEKWRHWLSALPQVEKLQ
FT                 IPRCLWPRHLIDTADDVQLHTFVDAGKDGMAAVCFLRVLKNEEIYCSLVTA
FT                 KARVAPLKLTSIPRLELQAAVIGTRLSKTVLDTLSIRITQRFYWTDSRDVL
FT                 CWINSNHRRYSQFVGFRVTEILESSEIHEWRYVPSKLNVADDATKWDGLPD
FT                 MSTRSRWFRGPDFLWKDPESWPTSSVRNESTTTELLTSLLVHRTPPQPVIV
FT                 VQKFSNWKRLQYVMARILRFVSNCRLKSQRKPTYSGPLTSDELRAAEVRLI
FT                 RIAQQAEYFEELRILQTAKHLPKSNALYKLLPWIDDRGLMRMRTRIAACEY
FT                 TTEDAKNPIILPRKHHITTLIIQHYHNRYHHQNHETVINELRQKYQIARLR
FT                 TCYNQVRRNCQKCKNESATPSIPIMADLPPGRLEAFSRPFTHVGIDYFGPI
FT                 EVVVGRRHEKRWGMLTTCLTTRAIHIEVVNSLSTDSCIMAIRNFIARRGQP
FT                 RKIYSDRGTNFVGADRELQRLQSAINHDEMMREFATEQTEWVFNPPLAPHM
FT                 GGSWERLIRTVKNNLMAVCTTKSLTDEVLRNLLVEIENVVNSRPLTHVPLD
FT                 EDSAPALTPNHFLLGSSSGSKPLVNLDDRGHILKQNMCTSQILANRYWKRW
FT                 VTDYLPEITRRSKWFQPVKPLATGDVVVIVDPKSPRNCWPKGRIIATTSSR
FT                 DGQTRSATVQTATGVYERPVAKLAVLDVQRVEQ"
XX
SQ   Sequence 6125 BP; 1696 A; 1565 C; 1557 G; 1306 T; 1 other;
     acaatatata attttcgttt attacgaatt atcacttcgc gagaatgtca agtcgtggtt        60
     cgaagtccga cggaaaaggt agtaaagtga gtggaaagag cgatcggcaa agggccaata       120
     atagtgaagc ggttgataat gtggaaaacg atgatgtggt agtggtggtg gaagagatgg       180
     aaaagaccgt cgatggacac acctgcagga gatgtagagg acctgatacg gatgacatgg       240
     tgcagtgcga caagtgtgac ggttggcatc actatgggtg cgttggtgta acggacgaag       300
     ttgccgatca aagttggagt tgtgccaatt gcaagacggc tacatggaac cagcgaacaa       360
     cggcagcatc tggcggagat ccagcgcagc aagagtccag caagacgctt ccatccaagc       420
     gtactccatt gccgaaacag gcctctccaa ccgggattca gggttcatcg agcggtatac       480
     cagagttact gaaaccatcg gctccaaaag ggactgggaa ggagttgtat gtcccgaagc       540
     tggcagggtt gccaaccatc cgattggacg aagcatcatc gatagtgtcc tgtacttcct       600
     cacagcggtc cgctaggaat cgcgctaaat tacagctgca gcggctggaa gaagaacgag       660
     ccttcgaaca gcagcaagca gagcgacggc gggcagccga acagctagaa gcggagaagc       720
     acagagagtt tctggagaga aagtacaaaa ttctcgatga attggcgagc gaaagcggat       780
     caagtaggcg ttccggtagt gaatgctctc ggagacgagt ggagaattgg attgagaagg       840
     aatgtcatct ggaggtagcg cagcagttcc atgaaccacc agcacagcag atgcgaggtc       900
     accaagacca gcgttcagca ccgcaggagt ttgaacaacg ccagcaaaca cctatcagaa       960
     tgtccaaata cttcaatcca aatatacaac ctcaatctac gcgaatccat tcagcgccgg      1020
     tccgagttcc gcgaactctg gcaaattcca cgattctaga gcagattcat ggtggtactt      1080
     caggtcacaa ccctacattt gcagagctgc cgagtaacga cgatgcattc cagttatcac      1140
     ggtctcaaat tgcggcaaga caagcggttt ccagggactt gccatcattt tccggtaacc      1200
     cggaggagtg gccgatcttt ctatccatgc tcaatagtac gaccgctatg tgtggatata      1260
     cggaggagga aaacctcgta cgcttgcaaa agagtttgaa gggaaaagcc tacgaagcag      1320
     tcaaatgtcg gttaatgcat ccgggaaacg tccaaggtat aatcaatacc ctcaaaatgt      1380
     tatacggcca accggagatc atcgtacaca cgttgattgg taagatcagc gctctgccac      1440
     caattcggga agatcgtctt gaaacgttgg tggactttgc tgtaaacgtc cagaatttct      1500
     gtgcaaccgt cgaatcgtgt ggtctggagg aatatatgta taacgtgacc cttcttcatc      1560
     agcttgtttc caagctaccg ccttcgatta agctgaattg ggcgcaacac cggaagacac      1620
     agctaacggc caacctggcg accttcagcg aatggatcta ctcgctagcg gaagcagcaa      1680
     gctcngtaac gtttccgata gacccgttgc agtcgaagcc gatccgaaac gacgctcgcc      1740
     gaaaagaaaa agaaggagcg tacctcaatg cccactcaga aacaccaacg aagtccatca      1800
     ctagctccat cccggccgct gaatcaatgc caaacgccca caaccgcgcc ggcgaaagga      1860
     tacctgtccg gtttgcaaaa ggatcctgta aatccgtgga caaatgcaag cgtttcttgg      1920
     agttttcgag agattccaaa tgggccgtca tccgagagtt cggtctctgc cgaacttgtc      1980
     ttcgccaaca caaaggattg tgcaaggcaa aaaccatgtg gcaaaagatg gatgctcctt      2040
     caggcatcac gagttgttgc acaatgaaca gaagttcaaa cagcaaacta tcggccagac      2100
     ggccgacaat ccagttactc cgccgacaac aagcgacgcc gatctggtct gtaatacgca      2160
     ccaagcagtt tctagtactg tcctattccg ctaccttcct gtagtactaa ccggaccggc      2220
     aaaaacggtt cataccttcg ctttcctcga cgaagggtca ggagcaacgc tgttggacca      2280
     agaattggcc gacgaacttg aactaggcgg cagccctagt ccaatatgcc tacgctggac      2340
     cggcggcaca gagcggtgcg agaaggattc gtgtatcgtt cgacttcaag tcgcaggaca      2400
     gtatgaaggt gcagcgaaat tcactttaga ggaggttcaa accgtttccg agctacgcct      2460
     accgcagcag accctagatt tcgatgaact gaaacaatca taccgctatt tggaagggtt      2520
     accaatttcg tcataccacg atgcacgccc acggattttg atcggaacca agcatgcaca      2580
     actgggatta accctgaaga gtcgagaagg gaaattcgga gaaccaatcg ccaccaaaac      2640
     acgcctaggc tggaccattt gtggcaattt gggatccgga gactcgctaa gcatgtttca      2700
     ctacagcttc cacgttagct cgctgaatga gcggttcgat gatgatatgc atcaagcgat      2760
     gaaggactat ttcgcaatcg acagcctagg aatcaatagt tcatccaaag cacttctgtc      2820
     agccgaagat gaaagagccg agacgctgct gaaatctctt acacgcttcg taggcgatcg      2880
     ctacgagacc ggcctgctct ggcgctacga caacgtccgt ctgcctgata gccggccaat      2940
     ggctcttcgt cgacaccgaa gcttggagaa gcgcatggca aacgatcctc aactcgcaga      3000
     agtcttgcag cagaagatag tcgactacat cgtcaaaggg tacatccgca aactttcgca      3060
     ggacgaagtt cagcagcaat ccagcaacgc atggttcttg cccgtctttc cagtgaccaa      3120
     cccaaacaaa cccgggaaag ttcgaatagt atgggacgca gccgctaaag ttcacggtgt      3180
     atcgttgaat tcggttctct tgaagggccc agatctgctg tgctctcttc ttggcatttt      3240
     gctgcgcttt cgacagcatc ctattgcggt gacgggggac atccgcgaga tgttccatca      3300
     ggtgaacatt cgtcgagaag atcagaaata tcaatggttt tactggacgg atgaaaaggg      3360
     cgaattggtg atctatacca tgacagtgat gacctttgga gcatgctgct ctcctagtag      3420
     cgcgcaatac gtcaagaacg tcaatgctga ccggtttatc ggaagtcatc cagaggcgtg      3480
     tgaagcaatc gcgaaatcgc actacgtcga tgacatgctg attagcgtag caacagagga      3540
     agaagcgatc caaatatcca aggatgtgcg gcacatccac gcccagggag gctttgagat      3600
     acggaattgg atcagtaact ccaaaaacgt catgaacgcg ctgcagaagc agagcgtaga      3660
     taacgagaaa agcttagacc tgtctactga actggccact gagaaagtcc taggcatgtg      3720
     gtggaataca acagccgatg cctttactta caagattggc tggaatcgat acgatgcgga      3780
     tttgttgaag ggcgatcgac gtcctacaaa acgagagatg ctgcgagtgc tgatgaccat      3840
     attcgaccca ataggactga ttgcccactt tctcgcctat ttgaaggtgt tacttcaaga      3900
     cgtttggcga tctggtatca cgtgggacga agaaatcgac gaagacgcct tcgagaaatg      3960
     gcggcattgg ctaagcgctt taccgcaggt ggaaaaacta caaattccta gatgcttgtg      4020
     gccccgccat ctcatcgata cagccgatga tgtccagctc catacgtttg tcgacgccgg      4080
     aaaagacgga atggcagcag tatgctttct gcgggtcctg aaaaacgaag aaatctactg      4140
     ttcattagtt acggctaaag ctagagtcgc tcctctgaag ctgacgtcga ttccacggct      4200
     cgagctgcaa gcggcagtta ttggaacaag gctgtcgaag actgtgcttg acacactatc      4260
     catccggatt acacaaaggt tttactggac cgattccaga gacgtcttat gctggattaa      4320
     ctccaatcac cgacgttaca gccaatttgt aggtttccgc gtcactgaaa tcttggagtc      4380
     aagcgaaatt cacgagtggc ggtacgtacc aagcaagctt aatgttgccg acgatgcaac      4440
     caagtgggac ggcttgcctg atatgtccac cagaagtagg tggttccggg gaccggattt      4500
     tttgtggaaa gatcccgaaa gttggccgac gtcttccgtt cgcaatgagt cgacaaccac      4560
     ggagttactg acaagtctac tggttcatcg tactccgccg cagccggtca tcgtcgtaca      4620
     aaagttctcc aactggaagc ggttgcagta cgtcatggca cgaatactac gtttcgtgtc      4680
     aaattgtcgc ctcaagtcgc aacgcaaacc cacgtacagt ggtcctctta ctagcgatga      4740
     gctccgcgca gccgaagtac ggctgatacg catcgcgcag caagccgaat actttgaaga      4800
     gctacgcatc ctacagaccg ccaaacatct tccaaaatca aatgcattgt acaaactcct      4860
     gccatggatc gacgaccgcg gccttatgcg aatgaggaca cgcattgcgg cgtgcgagta      4920
     caccaccgag gacgcgaaga atcccataat ccttccaaga aagcaccaca ttaccacact      4980
     aataattcaa cactaccaca atcgctacca ccatcagaat cacgaaacgg tgataaatga      5040
     gctgcgtcag aaataccaga tcgctcgctt acggacttgc tacaatcaag ttcggcgaaa      5100
     ttgtcagaaa tgcaagaatg aaagtgcaac accaagtatc ccgattatgg ccgacctgcc      5160
     acctggtcgt ctagaagcat tttcccgtcc gttcactcac gtaggcatcg attatttcgg      5220
     tcccatcgaa gttgttgtcg gcagaaggca cgagaagcgc tggggaatgc taacaacttg      5280
     cttgaccact cgagccatac acatcgaggt tgtcaactca ctcagcactg attcatgcat      5340
     catggccatc cgaaatttca tcgctcgtcg tggccaacct cgtaagatat atagcgaccg      5400
     tggcaccaac tttgttggtg cagatcgcga actacaacgg cttcagagtg cgattaatca      5460
     cgacgaaatg atgcgagagt tcgcaacgga gcagaccgag tgggtgttca atcctccgtt      5520
     ggcaccgcac atgggtggca gctgggagcg gctgatacgc accgtcaaaa ataatttgat      5580
     ggcagtctgc accacaaaat ctcttacaga tgaagtcctt cgcaatctac tcgtagagat      5640
     cgagaacgtc gttaattccc gtcctcttac gcacgttccg ctggacgaag actccgcccc      5700
     agcccttact ccaaaccact ttctgctcgg ttcctccagt ggctcgaaac cgttggtcaa      5760
     cttggatgac agaggtcata tcctgaagca gaacatgtgc acctcccaga tcttggcgaa      5820
     caggtactgg aaacgttggg taaccgacta tctaccagag atcacccgcc ggtcgaagtg      5880
     gttccaaccc gtaaagcccc tagctaccgg agatgtcgtc gtcatcgtcg acccgaagtc      5940
     cccacgaaac tgttggccaa aaggcaggat catcgcgacg acttccagcc gagacggaca      6000
     gacccgatca gcgacagtac agacagccac cggagtctac gagcgccccg ttgcaaagtt      6060
     ggcggttcta gacgttcaac gcgtagagca gtaagccaac cagaagttgg cgtaccccgg      6120
     gggac                                                                  6125
//
ID   BEL-282_AA-LTR repbase;    DNA;    INV; 905 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-282_AA_;
KW   BEL-282_AA-I; BEL-282_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-905
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2573-2573 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 905 BP; 332 A; 170 C; 158 G; 245 T; 0 other;
     tgttggccta ccccattaag ccagcgcgtt agtctataac cgtaatctct atattgtccg        60
     caaccttgcg agcaagtcca cagcttggta gtatggatga ggagtgacag gtacgcgccc       120
     tgtcaccagg tgagtcgaca gatcaggcag aaaatcaaac cattgtacaa tacaagttaa       180
     aaggcgtgga cttgattctt agttaaagca gattaaacac tagtgaaaat aacttaaaat       240
     tgaacttaaa actagtgaaa caaaggagaa acttagtatc tattatatac atgcagaatt       300
     ggtaagatta tctacttaaa atagcttaat ttgatattaa agttatactt actaactagg       360
     taacctacat tactacgagc tacatctaaa cgaacattaa cagtgcagtg cccataacgg       420
     taagacagat ttgctaattt ccctaaaata tcaaaatact agttgtaatg ttgtgaacat       480
     aaaacttaaa tcactagatt gtgctgaggt cactatatac cctcgaaagt tgcctacatc       540
     aaagcgcaaa ttacggaatt cggactcata agactgaaag gttaggaaaa tagacatttg       600
     accgacatca gactgacatt tgagcaggaa agggaactaa acgtaagtaa aattactgaa       660
     aaacttattt tcctaaaaca caaacataaa aatttgaacc ctctgaaatg ggatacagag       720
     gttcacctaa cgcactccac gtagcacaca accaatatga attattgaaa ccaagataag       780
     aacttatgta agaattcgtg tatcattcca taggaaaatt atattctccc ctgacaacgg       840
     atccagagtt tttattttcg ttccggagaa ttataatttc ggaaattccc gttggattaa       900
     atcca                                                                   905
//
ID   BEL-283_AA-I repbase;    DNA;    INV; 7116 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-283_AA_;
KW   BEL-283_AA-LTR; BEL-283_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7116
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2574-2574 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [6156-6725] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..5650
FT                 /product="BEL-283_AA-I_1p"
FT                 /translation="MSSDAAAERCCTLCEQPTHSGQMIECVKCHNRYHNSC
FT                 AGGEDGTSATSSPYYCDLCRPRDPAPSVSISSAASTTASAREARLQLQMQQ
FT                 LAEEKLLQERLMAEREKAEREMLRLERERNEKAIADKIELEKVFITRKYDL
FT                 LLAQVDEGDDNRSVRSRRSSLKSAQRVRIWIDNQQVTLNTKSGECISTGFT
FT                 SQQSSSANQQDGTAVHNLNPFEPPKTIAANDINVPENQAVAATVTSGWMDM
FT                 ISPFSSMNLGPTTSAPALLPTCQSTPFVAPTTTHPQASQPDDVELAQEDQH
FT                 NRTYSVRIDPANTALEVEPSLYVGSAPVSTPRRQVRIADTNVGSRARGDVF
FT                 SPSTSISNRNRQFYDANVAVSVSSLVGDTGSNQFRAMRDIVTIPSVTQTNQ
FT                 NPIRTVHSSSAAMLSVSSYQDPIFSLSMGSSAPQFPPLSNVQSIASNVAGP
FT                 SSARASHAIGVPTAVNPGVSDRTVYSSQFRSDCFNSGAISAPGINSRVDHL
FT                 RHPTHLAPVVSSASVHPAGMNAPSGVFPSAGNSTPMHSYFNPPFQQREIIG
FT                 AAHPVSSSSFDAQLLNAPTAQQLAARHVVPKELPAFSGNPAEWPLFWSSYE
FT                 TSTRICGYSDSENLMRLQRCLKGEARKAVSCFLLHPLNVPEILRTLSTLYG
FT                 RPEAIIGTLLAEVRATPAPRSDRLESIINFGLAVRNLCAHLIATGQELHLG
FT                 NPMLTNELVDKLPANIKLDWALYTQRVARADLRAFSDYMNVIVDAASRVTP
FT                 VMDKPEKSKGRAVINAHSSESYASKSHGEHKSTMMKTECDKPSVGASDKPC
FT                 MVCKISGHKPKDCTSFQSKTLENRWKIVQELHLCRRCLYPHGKWPCKASVC
FT                 GAGGCQQRHHKLLHPGNPKQEQDCAPSSSAVTGVVTVHQHLHNKVLFRIIP
FT                 VMLHANGRSVQTFAFLDGGSDSTLVEKSLIEQLGVEGPVSPLCMQWTNGVK
FT                 RTEEDSRKVQLIISGVGQSKQFQLKGVQTVESLDLPKQSVHFKELESRFAH
FT                 LRGLPVRSYSDGVPGILIGLDNTKVKTSLKQREGKANEPVATKTRLGWVVF
FT                 GRSGTMEPDPSHRVLHVCTRSHDDDLNELVKQFFTTESVGVSASTLTESED
FT                 DRRAREILEATTVRTPSGRYQTGLLWKLDEVKFPNSRPMAERRLQCLEHRL
FT                 SKSPDLYEKVRQQMSEYQVKGYAHQATPRELEESDPKRVWYLPLGIVVNPR
FT                 KPDKLRVVWDAAAAVQGVSFNSVLLKGPDMLVPLQTVLSRYRQKEIAVSAD
FT                 IMEMFHQVQIRPEDRQAQRFLWRDSPAEATKVFVMDVAIFGSTCSPCSTQY
FT                 VKNINADEHAAEFPRAAVAIKDNTYVDDYLDSVDTVDEAVQLALDVKTVHE
FT                 RGGFQIRHWMSNSPEVLRRIGEQNTQAVKSFVMDKDSQQERILGMVWLPNE
FT                 DMFSYTTTFRSDLERLFDVAVVPTKREVLRLVMSLFDPLGLIASFVVEGKV
FT                 IIQEIWRANVGWDERIPAEMLPRWQQWLEVLRLLDKVRIPRCYFPGYSKEA
FT                 YESLELHIFVDASESAFAAVAYFRIVDKGEVRCSLVGAKTKVAPLKLLSIP
FT                 RLELQAATIGTRLMKTIVDNHTIPVKRRVMWSDSRTVLAWLRSDQRRYRQF
FT                 VAFRVTEILEETSVADWRWVPSKQNVADEATKWGKSPNYLESCRWFNGPAF
FT                 LNEDESQWPKEETTSEQCTTEELRSVHVHVQTLAEPVIQFQRFSKWERLVR
FT                 AVAYVRRFYNNCLRKRAGSARKGDTLSSEELNLAEYSVWKMVQAEVFQEEF
FT                 ALLQKNRIVPESQQKPVEKSSKIYKLQSTLHISMFYISISLPMSMIASVPS
FT                 FCIRFRSPYLDILLISISPYLDVFLLIVCSQFSLHMSI"
FT   CDS           5811..7115
FT                 /product="BEL-283_AA-I_2p"
FT                 /translation="MVPSISRCGEATVSPFLGEGDIIRKNSRISASPHVSY
FT                 ETKFPVIVPKDHHATHLLVNWYHRKYGHANGETVVNEMRQRYHVPKLRVVV
FT                 RKTTKFCVWCSVYRVVPQVPKMGPLPLARLTPYVRAFTFVGLDYFGPLNVR
FT                 VGRASVKRWVALFTCLTTRAVHLEVAASLSTDSCKQAIRRFIARRGAPQEV
FT                 YSDQGTNFQGVSSELSKQIRSINATLASTFTNYRTQWKFNPPYAPHMGGVW
FT                 ERLVRSVKRGLSCLLTDRNPDDEALSTVLAEVESLVNSRPLTYLPLESEEH
FT                 EALTPNHFLLLSSSGVVQPTTKPTDESAALRSSWNAIQVMLDNFWRRWLKE
FT                 YLPIMSPQSKWFGELRNVQVGDLVMIASEKERNSWTRGRIQRVYPGKDGRV
FT                 RRVDVQTTMGVHQRPVSKLAILNVAGDPGIAEGSGSNTGRG"
XX
SQ   Sequence 7116 BP; 1918 A; 1745 C; 1865 G; 1587 T; 1 other;
     atcttaaaga gttttanact caaccatccg gctgattgaa tggtaattac catcacagga        60
     acagcgatat atgtcgagcg acgcagctgc cgaaaggtgt tgtacactct gtgagcagcc       120
     aacccacagc ggtcagatga tcgagtgtgt gaaatgccac aatcggtacc acaattcgtg       180
     tgccggtggt gaggatggta cgtcggctac gtctagccca tactactgcg atctgtgtag       240
     gcccagagac cccgcgccgt ccgtctcaat ctcctcggct gcctctacca cagctagcgc       300
     acgggaggcg aggttgcagt tacaaatgca acagctcgcg gaggaaaaac ttcttcagga       360
     gagattgatg gccgaacggg aaaaggcaga aagggaaatg ttaaggctcg aacgagaaag       420
     gaacgagaag gcgatcgccg acaagatcga gttagagaaa gtgttcatca cgcgtaagta       480
     cgatttgctg cttgcgcaag tggacgaggg ggacgacaac aggagtgtgc gcagtaggcg       540
     aagcagtctg aaaagcgccc agagagtgcg catatggatt gataaccagc aggtgaccct       600
     gaataccaaa tctggggaat gcatctccac tggattcacg tcacagcaga gcagttcagc       660
     aaaccagcaa gacggtacag cagtgcacaa cctaaacccc tttgagccac cgaaaacgat       720
     cgcagcgaat gatatcaacg tacccgaaaa tcaagccgtc gccgccacag taacgagcgg       780
     gtggatggat atgatttcgc cgttctctag catgaatctc ggaccaacca cgagcgcccc       840
     ggcactgctt ccaacgtgtc agtctactcc cttcgtggca cctacaacaa cacatccaca       900
     ggctagccag cctgatgacg tcgagctcgc ccaagaggat caacacaatc gcacctactc       960
     ggtgcggatc gaccccgcca acacagcact ggaagttgaa ccaagtttgt atgtaggttc      1020
     ggctccggta agtacaccgc ggagacaagt tagaatagcc gatacaaatg taggtagtag      1080
     ggcacgtgga gatgtattct cacctagcac atccatttca aaccgaaaca ggcaatttta      1140
     cgatgctaac gtagcagtta gcgtctcttc cctagtaggc gacactgggt caaatcagtt      1200
     tagggccatg agagatatcg taacaattcc atccgttaca caaacgaatc aaaatccaat      1260
     tagaactgtg cactctagca gtgccgcaat gcttagtgtc tcgagttatc aggacccaat      1320
     attctccctc tcaatgggtt cctccgctcc ccagtttcct cccctgtcaa acgttcaatc      1380
     gatcgcgagt aatgtggccg gtccgagttc ggcaagagct agtcatgcta tcggtgttcc      1440
     aacagcagtg aatcccggtg ttagtgacag aacagtgtat tcttctcaat ttcggagcga      1500
     ctgtttcaac agtggtgcga tctcggctcc cgggatcaac tctagggtgg accacctacg      1560
     gcatcctaca catcttgctc cagtggttag ttcagcatca gtgcatcctg cggggatgaa      1620
     cgcaccatca ggagttttcc catccgctgg taactccaca ccgatgcaca gctacttcaa      1680
     tccaccgttt caacagagag aaatcattgg tgctgcacat cctgtatcgt catcaagttt      1740
     cgacgctcaa ctactcaacg ctcctaccgc tcagcaactg gcagcccgcc acgttgtccc      1800
     gaaagaactt ccggcctttt cgggaaatcc tgcagaatgg ccattatttt ggagcagtta      1860
     tgaaacgtca acgagaatct gtgggtacag tgattcggag aacctcatga ggcttcaacg      1920
     ttgcctgaag ggagaagcga ggaaggcggt cagctgtttc ttgcttcatc cgctgaacgt      1980
     tccggagatc ctgcgcacgc ttagcactct atacggacga ccagaggcca tcattgggac      2040
     attgctagca gaggtacgag caacaccggc accgcgatcc gacaggttgg aaagcattat      2100
     caatttcgga ttagcagtgc ggaatctctg tgctcacctg attgcgactg gccaagagtt      2160
     gcacttagga aacccaatgt taaccaacga gctggtcgac aaacttccag caaacatcaa      2220
     gctagactgg gcgttgtaca cgcagcgggt ggcgagagca gatttacgag ctttttcgga      2280
     ctatatgaac gtcatcgtcg atgcagcgag tcgagtaacg ccggttatgg ataaaccgga      2340
     gaaatcgaag gggagagccg ttatcaacgc gcattcttcg gaaagctacg ccagtaagag      2400
     ccatggagaa cacaagtcca cgatgatgaa aacggagtgc gataaaccat cagtgggggc      2460
     tagcgacaag ccctgtatgg tttgcaagat aagcggacac aagccgaagg actgtacatc      2520
     gttccaatcc aaaacgctgg agaatcggtg gaagattgta caggaacttc acctttgcag      2580
     aagatgtctc tacccacacg gaaagtggcc ctgcaaggcg tcagtgtgcg gcgcaggagg      2640
     ttgtcagcaa cggcaccata agctacttca tcccggcaac ccgaaacaag agcaagattg      2700
     tgccccatct tcaagcgctg taacaggagt ggttactgtt catcaacatc tccacaacaa      2760
     agttttgttc cgaattatac cggtcatgct acacgccaat ggcaggtctg tccaaacatt      2820
     tgccttcctt gatggagggt cagactcaac attagtcgag aaatcactaa ttgaacaact      2880
     cggcgtggaa ggacctgtat ctccgttgtg catgcaatgg acgaatggag tgaaacgaac      2940
     cgaagaagat tccaggaaag ttcagctcat catttccgga gtaggacaaa gcaagcagtt      3000
     tcagttgaaa ggcgtgcaaa cagtggagag tcttgaccta ccaaaacaat cggtccattt      3060
     caaggaattg gaaagtcgtt ttgctcatct gcgaggatta cccgttagga gttacagcga      3120
     tggagttccc ggcattctaa tcgggctgga taacactaaa gtaaagactt ccctgaagca      3180
     acgagaagga aaggcaaacg aacctgtagc caccaaaacc aggctaggat gggtcgtgtt      3240
     tggccgatca ggaaccatgg agccagatcc atcgcatcga gtactccacg tgtgcacccg      3300
     ttcccacgac gacgatctca acgagctggt aaagcagttc ttcacgacgg aaagcgtagg      3360
     agtatctgca tcgaccctaa cggagtcgga ggacgatcga cgagcacgag aaatacttga      3420
     ggcgacgacg gttcggactc cctctggaag ataccaaacg ggcctgctct ggaagttgga      3480
     cgaagtcaaa tttccgaaca gtcggccaat ggctgagcgg cgtctccaat gcctcgaaca      3540
     ccgtctctca aagtcacccg atctttacga aaaagtaagg cagcagatgt ctgaatatca      3600
     ggtgaaaggt tacgcccatc aagctacacc aagggagctg gaagaatcgg atcctaaacg      3660
     cgtgtggtac ctaccactag gcatcgttgt aaaccctcgg aagcccgata aactacgtgt      3720
     cgtgtgggat gcggccgccg ccgtacaagg agtctcgttc aattcggtac ttctgaaagg      3780
     accggatatg cttgtgccgt tacaaactgt actttcgcgt tatcgacaga aggagatagc      3840
     cgtcagcgcc gatattatgg aaatgttcca tcaggtgcag ataagaccgg aagaccgaca      3900
     agcccagagg ttcctatggc gggacagtcc agcggaagct acgaaggttt tcgtgatgga      3960
     tgtggcaatc tttggttcaa cttgctcgcc gtgttccacg cagtatgtga agaatatcaa      4020
     cgccgacgaa catgcagcag agttcccgag agcagcggtc gccatcaaag ataacaccta      4080
     cgtcgatgac tatctcgata gcgtcgacac tgtcgacgaa gcggttcaac tggctttaga      4140
     tgtgaaaacc gtgcacgaac gaggagggtt ccagatacgg cattggatgt cgaactcccc      4200
     agaagtatta aggcgtatcg gagaacagaa cactcaagcg gttaaaagtt tcgtgatgga      4260
     caaagacagt cagcaagaac gtattctggg aatggtctgg ttgcctaacg aggacatgtt      4320
     ctcctacacg acaactttcc gaagcgattt ggagcgcctc ttcgacgtag ctgttgttcc      4380
     taccaaacga gaagttttga ggctagtgat gagcctgttt gaccctctgg gactcattgc      4440
     atcgtttgtg gtagaaggaa aggtcatcat tcaggaaatt tggagagcga atgttggctg      4500
     ggacgaacga attcctgccg aaatgcttcc tcgatggcaa cagtggttgg aggtgttacg      4560
     attgctggac aaagtaagga taccacggtg ttacttcccg ggatacagca aggaagcata      4620
     cgaatctctg gagctacata tctttgtcga cgccagcgag agcgctttcg cggctgtcgc      4680
     ctacttcagg atcgttgaca aaggggaggt tcgatgcagc ttggtgggag cgaagaccaa      4740
     agtagcaccg ttaaaacttc tctctattcc tcgcttggag cttcaagcgg caacgattgg      4800
     gacgcggcta atgaagacca tcgtggacaa ccataccatt ccagtgaagc gcagagtaat      4860
     gtggagcgat tccaggactg tgctcgcatg gctccgttcc gatcaaaggc gatatcgtca      4920
     gttcgtggca ttccgtgtta cggagatact ggaggaaaca agcgtagctg actggagatg      4980
     ggtgccatcg aaacagaatg tggcggatga ggccacgaaa tggggtaaaa gtcccaacta      5040
     cttggagagc tgcaggtggt tcaacggtcc tgcattctta aacgaggacg agagtcagtg      5100
     gcccaaggag gaaaccacat cggagcagtg tacgaccgaa gagctgagga gtgtacatgt      5160
     tcatgtgcag accttggctg aacctgtaat tcagttccaa cgattttcga aatgggagag      5220
     acttgtcaga gctgttgctt acgtgcgccg tttctacaac aattgcttac ggaaaagggc      5280
     cggctctgcg agaaaagggg atacgctctc cagtgaggag ctgaatcttg ccgagtactc      5340
     ggtctggaag atggtgcagg cggaagtgtt tcaggaggag tttgcgcttc tacaaaaaaa      5400
     tcgaatcgtt cccgagagtc aacagaagcc tgtggagaaa agcagcaaaa tctacaagct      5460
     acagtcgact ctccacatct cgatgttcta catctcgata tctctcccta tgtcgatgat      5520
     tgcttcggtc ccttcattct gcatacgatt tcgctctcca tatctcgata tcctccttat      5580
     ctcgatatct ccatatctcg atgtgttcct gttgattgtt tgttcccaat tttctctcca      5640
     tatgtcgata tgaacattat caaaggttac tagaccagat ttaaacgatt cagaacaatt      5700
     tggaaactcg aaatgaagtt tgtttgttta ttattttcct agtaacggag tgattttcaa      5760
     tctagtgttc attaaattaa tgttctttgt ctcgatctct ccctatctcg atggtccctt      5820
     cgatatcgag atgtggagag gcgactgtat caccgtttct gggcgaagga gatatcatcc      5880
     ggaagaacag ccggatttca gcgtcaccgc atgtttcata cgagacgaag tttccggtta      5940
     tcgtgcccaa agaccaccat gcaacgcacc ttctggtaaa ctggtaccac cggaaatatg      6000
     gccacgcaaa tggagaaacg gtcgtcaatg aaatgcgaca aagataccat gtcccgaagc      6060
     ttagggtcgt cgtaaggaag actacgaaat tctgcgtttg gtgctctgta taccgagttg      6120
     taccccaggt accaaaaatg ggtccactgc cattggcgcg gcttacgccc tacgtgagag      6180
     cgttcacctt cgtaggactg gactatttcg gaccactgaa tgttcgcgtg ggacgggcaa      6240
     gcgtcaaacg atgggtagct ctgtttacct gcctgactac cagggcagta catttggagg      6300
     tagctgcttc gttatcaacg gactcgtgca aacaggctat ccggagattc atcgcacgaa      6360
     gaggagctcc acaggaggtt tattcggacc aggggacgaa cttccaggga gtcagcagtg      6420
     aactgtcgaa acaaatacga tcaatcaatg caacactggc ttccaccttt accaactaca      6480
     ggacccagtg gaagttcaat ccaccgtacg ctcctcacat ggggggtgta tgggagcgac      6540
     tagttcgctc cgttaagaga ggactgagtt gtctgctgac agacagaaat cccgacgatg      6600
     aagctttgtc tacagttctt gcagaagtcg aatccctggt gaactcacgc ccactgacct      6660
     acctaccctt ggagagcgaa gagcacgaag ccttaacacc caaccacttt ctgctcctga      6720
     gctccagtgg ggtggtccaa ccaactacga agcctacgga tgaatcagcg gcccttcgtt      6780
     ccagctggaa tgctatccag gttatgctgg acaacttctg gagacgctgg ctcaaggagt      6840
     atctcccgat catgtcacct caatcgaaat ggttcggaga gttgcggaac gttcaagtgg      6900
     gagatttggt gatgatagcc agcgaaaagg agagaaacag ctggacgcga ggacgaatcc      6960
     agcgagttta tccaggaaag gacggacgag ttaggcgagt agacgtgcag actacgatgg      7020
     gagttcacca acgcccggta tccaagttgg ctatactgaa cgtcgctgga gatcctggta      7080
     tagctgaagg ttctggcagc aatacgggga ggggta                                7116
//
ID   BEL-283_AA-LTR repbase;    DNA;    INV; 480 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-283_AA_;
KW   BEL-283_AA-I; BEL-283_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-480
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2575-2575 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 480 BP; 179 A; 99 C; 73 G; 129 T; 0 other;
     tgtacgcgac gcaacccact gcgttcagta ccgccccgac aaattcgcta tcatctagtg        60
     gcgattccta aaaccttcgc tgacacctaa ctgacacctc gtaccttgca tacgtaaacc       120
     tatgtttgac aaaacgacag aaagttagaa gacgaacacg tgaaaagtta tttccattgt       180
     taaaatccac taaaatttct attttgtatc ctaaacttat aaaatcgtaa gtaaaatgaa       240
     ttgttaaaac ctattgtgaa ctaaaataat taaaaatcta cagcacaaca caaaacattg       300
     acaaataagc agttacaaac gacggacagt acacgaagaa aattaaaact gtgagtaaca       360
     taaaattcta ttaaaatcat gcaataataa agtgttttgt tgtagcttta agcttactct       420
     gctaaacaac gagtttgtct ggagaggttt tcgaaacgtc caatagtccg tcccgtaaca       480
//
ID   BEL-284_AA-I repbase;    DNA;    INV; 6887 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-284_AA_;
KW   BEL-284_AA-LTR; BEL-284_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6887
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2576-2576 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5788-6378] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1480..2388,2392..6048)
FT                 /product="BEL-284_AA-I_1p"
FT                 /translation="MVKKLKPKLHVRENIVDFLQRTARFLKNYDPATHDLQ
FT                 VQARIDKLDEKWDEFEDIQTQIEEMEEHEEKADDHKKIRADFEELYFQVRA
FT                 GLKSKLPPTTPSFSSTSATPPVGAGASVQLPKINLPEFKGDFDEWLPFYDT
FT                 FKSLIHSNADLSAIQRFHYLRASLKGDALKVVDAFPMCEASYGPAWAALTK
FT                 RYSNVYLQKKRHVNALLQYPKLKKMSASGIHDVIDCFDRHTKILDQLGEVS
FT                 AGWGAMLTQLLVSKLDDSTQKDWEEYALKKPDPTFRHVMEFLEGQTRILDA
FT                 VAVDQRPDTQRQPTAPGTSFKKFNPKLTVNTASDNSSMKCVSCNGPHYIAN
FT                 CPAFAKPAPDKRFQIVNSKKLCSNCLRRDHYSRDCKSSYRCRTCNKKHHSL
FT                 LHPGVSAMGSGSSAGAQDSAQSQAGGSGVSSATEVARQAVQSSVATIYAAN
FT                 VAVGSREVHIFLSTVLVSVKDRNGRLHTARALLDSGSQANIISERLCQILR
FT                 LPRKGASVPISGIGSAQIQTSSSVSATIVSRITDYSVPMEFLVLKKVTEDQ
FT                 PATTIPIDAWNLPSDMVLADPGFNERAPIDLLLGLEYFYEFLLLNDGRVQI
FT                 QRVGDGLPLFVNTVFGWIAAGKADLGKLNPVPCCHVTVDTSLDEKIERFWK
FT                 IEELQDVPRQTQEEQDCEQYFRNTFSRDSTGRYVVRLPKRMGFERMIGESK
FT                 DMAVRRLVQLERRLDKDEKLRKGYNEAMRAYLDQNHMEIVPEDALKDDKRL
FT                 VCYLPHHPVIKEASSTTKVRPVFDGSAKTTSNHSLNEALMVGPVLQDPLFD
FT                 LVLRFRKHSVALVGDIEKMYLQVKVHPDDTPLQRILWRFSPSEPITTYEMN
FT                 RVTFGLAPSSFLATRCLHQLAEDEGDQHPRAKAALTNDFYVDDYIGGANSE
FT                 EEALALRQELEQLMPKGGFRLRKWVSNAKRVLEGLAVEDLGTQSTLNFDQE
FT                 QVKTLGIHWQPGPDLLGIDVSNLTVNGQWTRRKVYSVIAQLWDPSGITAPV
FT                 ISWAKIRMQVLWIAVQGWDDPLSKELSDQWTKFYEQLPALANIKVERRAFT
FT                 NHPMLVQFHVFSDASEAAYGACIYARSIDQSGQIKVELLAAKSRPAALKKT
FT                 TLAKLELCGAHIAAKLYRATVKALKMEDTETWFWSDSTVVLSWLKLPPYVW
FT                 PTFVANRVAHIQELTKGHRWNHVKGTENPADLPSRGVMPKDLVDMQNWFHG
FT                 PHWLSLLDQHWNNERHLAYEAPAAELLEKKKGVLVATESIQLHPLLDRYSC
FT                 YWKLLRITAYCLKFIRNCQHRGLPPASPNLTVADLQEAKYALIRCVQREPF
FT                 AAEIKALASHRLVPAHSSLKLLHPFLDHHGILRVGGRLRLAGESYTVRHPM
FT                 ILPSNHSFTRQMAIAYHNMSLHSGPRMTLAQIRQEFWPLRGKALATFTFRN
FT                 CIRCFRSNPVPITQPPGQLPKPRTTPARAFTVTGVDYCGPVYLKPVHRRAA
FT                 AQKAYIAVFVCFATKAVHLELVGDLTTAAFIAALRRFVARRGLPSEIHSDN
FT                 GLNFKG"
XX
SQ   Sequence 6887 BP; 1739 A; 1696 C; 1762 G; 1662 T; 28 other;
     ataaagatcg atcacgaacg gtcgccggtt tctttctagc tcgccgaacc aattacgtat        60
     ttntatncgc nggtccnaga agaataaagt gcacagtagt aaccgttgaa ataaatactc       120
     acctgttttn cctttacacc ggtcgtgttc tgtgtnacct gaaaagaaga tacttacctg       180
     atacctggtg aacttacctg atccttggtg aacctagaag agaagaaaat acttaccaga       240
     atgctacaaa cgtacgaaga aataagtgca taactctttg aaaaccaacc gtcaagtgta       300
     tagcgtcaag aaagtctaaa cggaatacga aagaaaggat atttatttgg cgcataaagt       360
     gagctaagtg tccaaaagca gttaagggtc cgaacatggt gccgtgacca ggatttgtgc       420
     cgcgggaagt gattttggac accatcttgc cgccatcgtt tgtgcgccaa gtctcggtag       480
     cgttggacta ttgtagttcc gtgagtgacc tcgctttgtt ggacggcttc tatctacggt       540
     catcgactct acgaagaggt caggaacctt aacgatattc gctattcggc tgtgttatta       600
     cntnaccgcg ctgtgataac cagaaaacca tcggngngcg atattgccgt agagtgagng       660
     aagtctgtgc catacgtttc ntgtgggaat aggctcacgc ggtgtgnntn tttttttcgt       720
     ttcgttgttg cctgcggttg atgagggtgc ggantggtcg cgcctaaatc tgtacgcctt       780
     gatatttcaa accaattgaa gatacgacga ccgggcagaa ccaaagcggt ggttctggtg       840
     gatcagtata agcggatgct ggtaaccggg ggcgcgtatt ctatatacgg ttgcaataca       900
     aggcctgtac tgccaggctc acacggtgag tacttggctg aagcgctttt tcaacggatc       960
     aaattgcaac caattttttg attctcggtc ctgcgctgct accgatgtac gagttttgac      1020
     gattaattgc tgcatactgg tgacctgttc gctgtggata gtagacttgg ctgacattct      1080
     acgaaccttt agaaggttcc tattggttcc tgttggcaga aagataaata caaggcctaa      1140
     ttcattaggc tctcaggtga gcctcattcc aaatttatca ctttctgtct cgtggtgctg      1200
     tgcttcgtac tatttcacag tcgacgaaag ggaatcctac ggctttggag aatcgttgga      1260
     tagctcgctg gtgacgtcat cgctgcgcgt cgcattggtg acaggttgag aggaacattt      1320
     cggacgattg ctgtttgttt ccagttggct gataaataaa tacaaggcct attttaatag      1380
     gctctcaggt gagcctcatt ccaatccatt tatcgttttc tttgtggtgc tgtgcttcgt      1440
     aattcttcac agttgattgc cgacgtcgac tgctatacca tggtgaagaa actgaagccg      1500
     aaactacacg ttcgggagaa catcgtagac tttcttcaac ggacagcccg gtttctgaag      1560
     aactacgacc cagccaccca cgatctccaa gtacaagcgc gcatcgacaa gctggacgag      1620
     aaatgggacg aattcgagga tatccagacg cagatagagg agatggagga acacgaggag      1680
     aaagcggacg atcacaagaa aatcagggcc gacttcgagg agttgtactt ccaggtaagg      1740
     gcagggttga aatcgaagtt gccacctacc accccatcct tctcctccac ctccgctact      1800
     ccacctgtgg gggcaggtgc aagcgtacaa ttgccaaaga taaatttgcc agaatttaaa      1860
     ggggattttg acgaatggtt gccgttttac gacaccttca aatcgctgat ccatagcaat      1920
     gctgatctca gtgcgataca acgttttcac tacttgcgag cgtcattaaa gggagacgcg      1980
     ctcaaggtcg tcgatgcttt tcccatgtgc gaggctagct acgggcctgc ctgggctgct      2040
     ttaaccaaac gttattcgaa cgtgtatctg cagaagaaac gccacgtaaa tgcacttctg      2100
     caatatccga aattaaagaa gatgtcagca agtgggattc atgacgtcat cgactgtttc      2160
     gaccggcata caaagatttt ggatcaattg ggggaagtat ctgcgggctg gggggcgatg      2220
     ctgacgcagc tgttggtgtc gaaactcgac gattctactc agaaggattg ggaagaatac      2280
     gcgctgaaga aaccggatcc tactttccgg cacgtaatgg agttcctgga aggtcaaacc      2340
     cggattctgg atgctgtggc ggtcgatcaa cgtcctgata ctcaacgtnt tcaacctaca      2400
     gctcctggta cgtccttcaa gaagttcaac ccaaagttaa cggtgaatac agcgtcggat      2460
     aattcgtcga tgaagtgcgt atcctgcaac gggccacact atatcgccaa ctgtccggct      2520
     tttgcaaagc cggctccgga taagcggttc cagatcgtca attctaagaa gctgtgcagt      2580
     aactgtctcc gtcgtgatca ctacagtcgg gattgcaagt catcgtaccg ttgccgtacg      2640
     tgcaacaaga agcaccacag tctactccat cctggcgtgt cagcaatggg ctctggttca      2700
     tcggcaggcg ctcaggactc agcacaatcg caagcgggcg gttctggtgt ttcatcggca      2760
     acggaagttg ctcggcaggc agtacagagc tctgtcgcca ccatctacgc ggcgaacgta      2820
     gctgttgggt ctcgagaggt gcatattttc ctatcaacgg ttctngtatc ggtgaaggat      2880
     cgcaacgggc gattacatac ggcgagggcg cttctggaca gcgggtcaca ggcgaatatc      2940
     atctcggaaa ggctgtgtca gattttaaga ctgccgcgga aaggagctag cgtacctatt      3000
     tccggaatcg gcagcgcgca gattcaaaca agcagttctg tgtctgcaac tatagtttcg      3060
     cgtatcacgg attattctgt tccgatggag ttcttggtcc tcaagaaggt gacagaagat      3120
     caaccggcaa cgacaattcc tatcgatgca tggaacctac cctcggatat ggttctggcg      3180
     gatcctggct tcaacgagcg tgctcctatc gatcttctgc tggggttgga gtatttttac      3240
     gagttcctgt tgttgaatga cggtcgagtt caaatacaac gcgtgggtga tggacttcca      3300
     ctcttcgtca ataccgtttt cggatggatc gctgctggta aagcagatct gggcaaactc      3360
     aatccagttc cttgctgcca cgtgacggtt gacacctcgc tggatgagaa aatcgagcgt      3420
     ttttggaaga tcgaggaatt gcaagatgta ccccgtcaaa cccaggaaga gcaggactgc      3480
     gagcaatatt ttcgaaatac attttcccgt gactcaacgg ggagatacgt agtgcgcctg      3540
     ccgaagcgaa tgggtttcga gcggatgatc ggcgaatcga aggatatggc agtgcggaga      3600
     cttgtacagt tggaacggcg gctggacaag gacgaaaagt tacggaaggg ctacaatgaa      3660
     gcgatgaggg cgtatttgga ccaaaatcac atggagattg ttccagaaga tgccttgaag      3720
     gacgataagc ggctcgtttg ctatttgcct caccatccgg tcataaaaga ggcgagttcg      3780
     acgacgaagg ttcggccggt attcgatgga tcggccaaga cgacatctaa ccattccttg      3840
     aacgaggcgc tgatggtagg accagtcctt caagatccac ttttcgatct ggttctgcgc      3900
     tttcggaaac attccgtcgc ccttgttggt gacatcgaaa aaatgtacct gcaggtgaag      3960
     gtgcaccctg atgacactcc tctacagcgg attctatgga gattctcgcc gtcagagccg      4020
     attacaacat acgagatgaa ccgggtcacg ttcggcttgg ctccatcctc gtttctggca      4080
     actcggtgtt tgcatcaatt agcggaagac gaaggtgatc agcatccccg agcgaaagcg      4140
     gcgctcacaa acgacttcta cgtcgacgat tacatcggtg gcgcaaattc cgaggaagaa      4200
     gctcttgcat tacggcagga attggagcag ttgatgccta aaggaggttt ccgactgcgc      4260
     aaatgggttt ccaatgcaaa acgtgtgttg gaaggactgg ctgtggaaga tttgggaacg      4320
     cagtcaacgc tgaacttcga ccaagaacag gtaaagacgc ttgggattca ttggcaacca      4380
     gggccggatt tgttgggcat cgacgtttcg aatctcactg taaacgggca gtggactagg      4440
     cgaaaggtgt actccgtcat cgctcaacta tgggatccca gcggcattac ggctccagta      4500
     atctcttggg ccaaaatacg catgcaggtg ttatggatag ctgtacaagg ctgggatgat      4560
     ccattgtcca aggaactatc agatcagtgg acaaagttct acgaacaact acctgctctt      4620
     gcaaacatca aggtggaacg acgtgctttc accaaccatc ccatgttggt ccagttccac      4680
     gtcttttcag atgcttccga ggctgcttac ggggcgtgta tctacgccag atctatcgat      4740
     caatctgggc aaatcaaagt cgaactcttg gcagccaaat ctcgacctgc cgcgttgaag      4800
     aagacgactc ttgcgaagtt ggaactatgc ggtgcccaca ttgctgcaaa actctaccgt      4860
     gcaactgtca aagcgttgaa aatggaggat accgagacct ggttttggtc agattcgacg      4920
     gttgtgctgt cctggttgaa gctgcctcca tatgtctggc ctacattcgt cgctaatcga      4980
     gttgcgcaca ttcaggagct cacaaaggga catcgatgga atcatgtgaa ggggaccgaa      5040
     aatcccgccg atcttccgtc aagaggagta atgccgaagg acctcgtcga tatgcagaat      5100
     tggtttcacg gtccacactg gttatcgctg cttgaccaac actggaacaa tgagcggcac      5160
     ttagcgtacg aggcaccagc ggcggaactc ttggagaaga agaaaggcgt tctagtagca      5220
     acagaatcaa ttcaactcca tccacttctc gaccgttact cttgctactg gaaactcctg      5280
     cggattacag cgtattgcct caagttcatc cggaattgtc agcatcgcgg attgccccca      5340
     gcatccccga atctgactgt cgcagattta caagaagcca aatacgcact aatacgatgt      5400
     gttcaacggg aacccttcgc cgcagaaata aaagcgctcg ccagccatcg actcgtacct      5460
     gcccactcat cgctaaagct gcttcatccc tttctcgatc atcacggcat acttcgcgtt      5520
     ggtggccggc tacgcctggc cggtgaatcg tacactgttc ggcaccccat gatcctccca      5580
     agcaaccatt ctttcacacg gcaaatggca atcgcatacc acaatatgtc actccattct      5640
     ggcccccgta tgacgctggc ccaaatccgt caagaattct ggccccttcg tggtaaggca      5700
     ctggcaacct ttactttccg gaactgcatt cgatgctttc gaagcaaccc tgtccctata      5760
     acccaacccc ctggtcaact cccaaaacct cgtacaaccc ctgcccgagc attcaccgtc      5820
     acgggcgtag actactgtgg ccctgtctac ctcaaacctg tccaccgaag agcagcagcg      5880
     cagaaggctt acatagccgt cttcgtgtgc ttcgctacga aggcggtcca tctcgagctg      5940
     gtaggggacc tcaccactgc cgctttcatt gctgcattgc gccgattcgt ggcccgtcgg      6000
     ggcctgccat ctgaaatcca ctcggacaac ggtctgaact tcaagggcgn cagcaactat      6060
     cttcgagagc tttacgacct gttgcacgac ccngatgcga agactgcgat ttccaacgaa      6120
     acttcacggc gaggaatggt ctggaaattc ataccacnca gagcacctaa cttcggcggt      6180
     ctatgggagg ctgccgtgaa gtccgctaag acatctctag ttcgagtact gggccagcag      6240
     aagttgtcgt tcgaggacat gacgaccatn ctcacccaaa tcgaggcggt gatgaactct      6300
     cgaccgctta cacccttatc ggaggatcca gatgagttca acgtccttac gcctggacat      6360
     tttttgaccg ggtcntcgct gctggccatc cccgatccgg actacacgga cgtccctctg      6420
     aatcggcccc aacactacca agggttgcaa caagtggtac agcaacattg gaagcggtgg      6480
     agacaggagt acatctcgca gctccacaat caaaatcaac gttttccaca agcaactaaa      6540
     ctgaaggtgg gtcaaatggt ggtcctgaag gaggaaggag atgcggccat cgagtggccg      6600
     cttgcacgca tcgtcgaagt ctaccctggc ccggacggag tggttagggt agtgaaggta      6660
     cgaaccccga acggtgcaga ctataagcga caatcatcga ggatctgctt gctaccgttc      6720
     gagaagattt cgacggatca accaacacga tncgcttcta gttcaatcaa cacaacgtag      6780
     ttcgnatnat caaataattg taaaatgtgc taatcaatat gcgttagaat aagtagatca      6840
     ngtcagnata atttttaaat tgctctagag aatttaggtg gccggca                    6887
//
ID   BEL-284_AA-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-284_AA_;
KW   BEL-284_AA-I; BEL-284_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-194
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2577-2577 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 194 BP; 52 A; 42 C; 33 G; 67 T; 0 other;
     tgttaagtac aaacattatt agtttaatat ttggctcctt ctgagcatcc ctagacggta        60
     gcataatttc tcccaaccaa attcactctc tcgaaaagct taacgctatc agttgtggtg       120
     cgtatatacg cctaggtaat aataaatttt tggttttgtt gctatcgctc tgttcgccat       180
     acgatcagta cgca                                                         194
//
ID   BEL-285_AA-I repbase;    DNA;    INV; 6590 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-285_AA_;
KW   BEL-285_AA-LTR; BEL-285_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6590
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2578-2578 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5632-6201] - Integrase core
CC   'ATATG' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1102..2292,2296..6588)
FT                 /product="BEL-285_AA-I_1p"
FT                 /translation="MVTLASSQMLHQGRFETAPLDCNRSQANFLAPPRTTC
FT                 GDFYGRISRPPQLGTIPKNPAQKQFSSQPLVENNALGTLSTTMVPVLPPTH
FT                 QRVTSVSSYSYPITTPMVFDGVVHGQNVTSVSQTVSAPSAPRARETGIHSN
FT                 MVAPAASGRASFVPPGFSGMQQFEVPSTSIQPLAPLNGPTPQQIAARHVVP
FT                 KDLPVFSGDPTEWPLFASSYYNSTAMCGYSDGENLMRLQRSLKGNAREAVH
FT                 CHLLHPSSVPQIMMTLQTLFGRPELIVRCLLNKVQSTPAPKADKLETLISF
FT                 GLAVQNLCSHLQSMGMEAHMANPTLLQELIEKLPTNLKLDWALHQRQLANV
FT                 DLRSFGDYMSTIVFAASKVSVGSEPVRRPEKPKGKEKGFLNAHSKDDADRS
FT                 TRERRISNAGEAKAPYTPKPCPICKRESHKVKDCSSFLKASIDDRWKLAHQ
FT                 ANLCRRCLIGHGKWPCKATVCGSNGCELRHHKLLHPGKPESSVIAKDQPKV
FT                 TGTVGVHRHKSRPTLFRIIPVTIHANGTSIRTLAFLDDGSSYTLIEQDLAE
FT                 ELGVTGELEPLCLQWTSGITRTEVNSRLLRMEISGVNAARKHVLEDVRTVE
FT                 KLDLPPQSLRFQELADKYEYLRGLPVASYDSAAPRILIGVDNANLLVTLKK
FT                 REGKKFEPVATKTRLGWTIYGIVEGFCGSSQRLLHICARSSDDELHEKVNE
FT                 FFSVESVGVAVISEIEAEDDRRARSIMEETTIRTPSGRYQTGLLWRYDYVE
FT                 FPESWAMAEQRLKCLERKLSRNPELYNNVKQQIVDYQLKGYAHELTEEERS
FT                 SSDPRRVWYLPLGVVTNPNKPGKVRVVWDAAAKVDGISFNSMLMKGPDLTT
FT                 SLTTVLYRFRQRQIAIAGDIKEMFHQIQIRPQDRQAQRFLWRDGTGEPLKE
FT                 YVMDVATFGSTCSPSSAQFVKNRNAEEWSCQYPEAAIAITESHYVDDYLDS
FT                 LDSEEEAVKLALDVKTVHAKAGFEIRNWLSNSEVVIQRVGDPGHQIAKKFT
FT                 VGKGTETERVLGMSWTPNEDTFTFAVNFRSDIQSLINGTSVPTKRQVLRVV
FT                 MSVFDPLGLVAAFVIHGKCLVQDIWRTKIGWDEPIPTELHDTWRRWIQILQ
FT                 QLPLLKLPRCYFPNYSTDSLQSLQLHVFVDASETAYSCVAYFRIIDQGKTR
FT                 CVLVSSKTKVAPSKPMSIPRLELQAAVIGTRLMKSVQQSHTLPICRRVIWT
FT                 DSRTVLSWIQSDQRKYRQFVAFRVSEILEETKLDEWRWIPSRLNVADEATK
FT                 WGNGPNLGEHSRWFCGPGFLYNEESEWPTQELPKADTAEEQRPVHAHHRAT
FT                 REPLVDFQRFSNLQRLIRTVAFVRRFIAVTRKTFAPEVPASAILSRLEIQE
FT                 AEFTLWRWVQAETFPGELRTLRDNQQLQAHQRKKFGKNSPLRKLSCFLDDA
FT                 GVIRLDGRLQNAPHASYSAKFPVVLPKDHYFTGLLVSSYHRRFAHGNGQTV
FT                 VNEIRQKFHISSLRIIVRQIAKQCSWCTVYKAGPRFPKMAPLPEARVTPYV
FT                 RAFTHIGIDYCGPFSIRVRRYEVKKWVMLVTCLTVRAVHLEVVGSLSTEAC
FT                 KMAIRRFIARRGSPLEIYSDQGTNFVGASRELKEEIASINRDMAGTFTNAD
FT                 TQWRFNPPATPHMGGVWERLVRSVKTALRTISSGRKPDEETFYTYLTEVES
FT                 IVNSRPLTHVPLEHEDGEALTPNRFLLLSSSGVVQPTQPPVVSGSALRANW
FT                 SQIQHLLDLFWSKWTKEYLPTINCRSKWLTDTKPLQPGDLVMVVDSGLRNS
FT                 WKRGKIVRIYYGSDGVVRRADVQTANGLLQRSVTGLVVLEVMKSGTAAEGC
FT                 QQYGSG"
XX
SQ   Sequence 6590 BP; 1787 A; 1630 C; 1716 G; 1447 T; 10 other;
     aactttaaga attttaacct caattcggtg gatatttccc cccacaaacg gaggttataa        60
     attgcacggt cacggtgaaa ttaatttcat cccgacatgg ctacttccat ccgtcggcaa       120
     agcgtagtgc ggcagttaac ggatgatgaa aacagcttcg attgcccact ttgcacacaa       180
     ccgaacatcg ccgataagtg gatggtccag tgcgatgttt gccaatgctg gatccacttt       240
     tcttgtgccg gcgtcgacga gaccattcgg aacagcgcct ttacttgtgc gaaatgtgcc       300
     ccacccctcc cagatggttc acgatcggga agatcgacgt cgtcaagcgt tcgtgctgcc       360
     aggcgacagc tagagctgca gcgtttatcc gaggagaagg cactacagga aaggttgctg       420
     aaggaacggc aagaagagga agaagcaatg cagaagaggg caatggagca ggagcaggag       480
     cggaagaaaa gggctatgca ggagaagctt gagctggaaa ggcagtacat cgagaagaaa       540
     ttcgagttgt tgcatgctga gttggacgag gatgatgacg atcggagtgt acgaagccac       600
     cgaagcaacc gaagcattcg ccgcacagtc caggagtggg tgaaggacca agaaganatg       660
     accctggcca ccggtaccgg aattgagcgt attcccactg gtcccacgtc aaataccgga       720
     actttgccca aaaggacgtc tgctgcgaat aacgatgtcg gtcgaatcgt gaacacgtcc       780
     cacgtcgatg accaaaccaa ccttccagct acaggagtnc cttccagtgg acatgaccca       840
     cgcagaacca ttaattttgc ggctctgaat atttctcctc cttcagcccg acagaaggac       900
     atgatgtcgt ccacgaacat ggtcatttct cctcctgtag agtctaccaa tctggggaat       960
     agttcttctt cgcagctgat tgtaggngag caccaaccac ngagaaatgc cgagcagcac      1020
     caacaacagg gggatgccgg tcagcaccaa ccagctctgc aaaacgtttc gagcgctgca      1080
     atcgatggtg ctcccaatcg tatggtaacg ttagctagta gtcaaatgct acatcaaggt      1140
     aggtttgaaa ctgctccatt agattgtaat cgatcccagg caaatttcct cgctcctccg      1200
     cgaacaactt gtggtgattt ctatggtaga atatctcgcc ccccacaatt aggcactatt      1260
     cccaaaaacc cagctcagaa gcaattctcg tctcagccct tagtagagaa taatgcatta      1320
     ggcacactct ctacaacaat ggtccctgta ttgcccccaa cacaccaacg cgttactagt      1380
     gtttctagct actcatatcc aatcactacg ccgatggttt tcgacggagt agtgcatggt      1440
     caaaatgtga caagtgtttc gcaaactgtc agcgctccaa gtgctccacg tgctagggaa      1500
     acgggtatcc attcgaacat ggtggcacca gcagcttcgg gtcgagcatc gttcgttcca      1560
     ccaggcttct ccggtatgca gcagttcgag gtaccatcaa cgagcattca accactagct      1620
     cccctaaatg gaccgacacc ccagcagatt gcagctcggc acgttgtgcc aaaggatttg      1680
     ccagtgttct ccggcgatcc tacggagtgg ccactcttcg ccagcagtta ctacaattcc      1740
     acagccatgt gtggctactc ggacggcgaa aatctgatga gactgcagcg cagtctaaaa      1800
     gggaatgcaa gggaagcggt tcattgtcat ctcctgcacc cttcgtcagt tccgcaaatc      1860
     atgatgacgc tgcaaactct cttcggtcgt ccggagctca tcgttcgctg cttgttgaat      1920
     aaggttcaat caaccccagc accgaaggcc gacaagctgg aaaccctcat cagctttggt      1980
     cttgctgtcc aaaatctctg cagtcatctg caatcaatgg gaatggaggc tcacatggcc      2040
     aatcctactc ttctgcaaga gctgatagaa aagttgccca ccaacttaaa attggattgg      2100
     gcattgcatc agcgtcaact ggcaaacgta gacctgagat cctttggtga ttacatgtca      2160
     acgatcgttt tcgccgcttc taaggtttcg gttggatcag aacctgtacg aaggcccgag      2220
     aagccaaagg gcaaggagaa aggctttctg aacgcccatt ctaaggatga cgcagacaga      2280
     agcactcgag aagngcgaag gattagcaac gcaggngagg ccaaggctcc atacaccccc      2340
     aagccgtgtc cgatatgcaa aagggaatcc cataaggtaa aagattgcag tagttttctg      2400
     aaggcgtcga tagacgatcg ctggaagtta gctcatcagg caaacctgtg caggcgctgc      2460
     ttaatcggcc atggcaaatg gccgtgtaaa gcgacagtat gtggatctaa cggctgtgaa      2520
     ctacgtcacc ataaattgtt gcatcccggg aaaccggaat catcggtcat cgctaaggat      2580
     caaccgaagg tcaccggaac agtaggcgta caccgtcata agtcacgtcc cacccttttc      2640
     cgaatcattc cggtcaccat tcatgcaaac gggacatcca ttcgtacgct agcgtttctc      2700
     gacgacggct cctcctacac gttgatagaa caggatctcg cggaagaact cggcgttact      2760
     ggtgaactgg aaccactgtg ccttcaatgg acaagtggaa taacacgaac ggaagtgaat      2820
     tctcgattgc tgcggatgga aatatcaggc gtaaacgctg ccaggaagca tgtcttagag      2880
     gatgtgcgta cagtggagaa actggatctc ccacctcaat cgctgcggtt tcaggagctg      2940
     gccgataagt atgaatacct gagaggttta ccagtagcta gctacgatag cgcagcacct      3000
     cgcattctga taggtgtcga taacgccaac ttattggtaa cgctcaagaa aagagaaggg      3060
     aagaagttcg agccagtggc caccaaaact aggcttggct ggacaatcta cggaatcgtg      3120
     gaaggctttt gcggatcgtc gcagaggctc cttcacattt gcgcccgatc atcagacgat      3180
     gaacttcacg agaaagtcaa cgagttcttc tcagtagaga gcgttggcgt tgccgtcata      3240
     tcggaaatcg aagcagaaga cgatcgccga gctcgatcaa ttatggaaga aaccactatc      3300
     cgaactccat ctggaaggta tcaaaccggc cttctatgga gatacgacta cgtcgagttc      3360
     ccggaaagtt gggccatggc agaacaacgc ctgaaatgtt tggagcggaa acttagcaga      3420
     aacccagagc tgtacaacaa cgtgaaacag caaatcgttg attaccaact taaaggctat      3480
     gcgcacgaat taaccgaaga ggaaaggagc agcagtgatc cacgaagggt ttggtatttg      3540
     ccactngggg ttgtgacaaa ccctaacaaa ccaggcaagg tacgggtcgt ctgggacgcc      3600
     gcggccaaag tggacggtat ttcattcaac tctatgttga tgaagggccc ggacctaacg      3660
     acttccctca ctacggtgct gtatcgcttc cggcaacggc agattgcaat agcaggtgac      3720
     atcaaggaga tgtttcacca gatccaaatc cgtccgcaag atcgtcaagc ccagagattt      3780
     ctgtggcgag atggaactgg tgaaccgctt aaggaatacg tcatggacgt ggcaaccttt      3840
     gggtcgacct gttcaccgtc atcggcccaa ttcgttaaga acaggaacgc tgaggagtgg      3900
     agttgtcaat atccggaggc agcgatagcc atcacggaga gtcattatgt cgatgactat      3960
     ttagacagtc tagactccga ggaggaagcg gtgaagctgg cgctcgacgt gaagaccgtt      4020
     catgctaagg caggattcga gatccggaat tggctgtcaa attcggaagt ggtcattcaa      4080
     cgggtcgggg atccaggtca ccagattgcg aagaagttta ccgtcggaaa aggaacggag      4140
     accgaaagag tactgggaat gagttggacg ccaaatgagg acacgttcac ctttgcagtc      4200
     aactttcgaa gcgacatcca atctctgatc aacggcacga gcgtaccaac taaacggcag      4260
     gttctacgtg tcgtaatgag tgttttcgac ccactgggat tagtcgctgc attcgtgatc      4320
     catggaaagt gtttggtaca agatatttgg cggactaaaa ttggatggga cgaacccatt      4380
     ccaacggaac tccacgacac atggcgccga tggattcaaa ttctgcagca gctacctctg      4440
     ctcaaacttc cgcggtgcta tttcccaaac tatagtaccg atagtctcca gagtctgcag      4500
     cttcacgttt tcgtagatgc gagcgagacg gcctactctt gcgtcgcata ctttcggatt      4560
     atcgaccaag gaaagacacg atgcgtgctt gtgtcgtcca aaacgaaagt agccccatcg      4620
     aagccgatgt ctattccgcg tttagagctc caggcggctg tcatcggtac acgattgatg      4680
     aagtctgtcc agcagagtca tacgttgcca atctgccggc gagttatttg gactgattca      4740
     agaaccgtgc tgtcgtggat tcaatcagat caacggaaat accgacagtt tgttgcnttt      4800
     cgngttagcg aaatcttgga agaaaccaag ttggatgaat ggagatggat cccatcacgc      4860
     ctcaacgtag cggacgaagc aacaaaatgg ggcaatggac cgaatctagg agaacacagt      4920
     cgatggtttt gcggaccggg gtttctgtac aacgaagaat cggagtggcc gacacaggaa      4980
     ctgccaaaag cagatacagc ggaagaacaa cgcccggtgc atgcacatca tcgagcaaca      5040
     agggaacctc tcgtagattt ccagaggttc tcaaatcttc agcgactaat tagaaccgtc      5100
     gcttttgtac gtcgtttcat cgccgttact agaaagacgt ttgcacctga agttccagcg      5160
     tctgcgatac tgtctcgcct agaaattcag gaagcggaat tcactttgtg gcgttgggtt      5220
     caagcggaaa cttttcctgg cgaactacgg acgcttcgtg acaaccagca acttcaagcc      5280
     catcaacgta agaagtttgg gaaaaacagt ccattgcgga aactctcatg cttcctcgac      5340
     gacgccggtg taataagact ggatggacga ctgcaaaacg ctccacacgc ttcgtactcg      5400
     gccaaatttc cagtcgtttt accaaaggac cactacttca cggggttgct cgtctcttcg      5460
     tatcatcgac ggttcgcaca tggaaatggc cagaccgtgg tgaatgaaat acgccagaaa      5520
     tttcacatct ccagtcttcg aatcattgtt cgacagattg ctaagcagtg ttcttggtgc      5580
     actgtctata aggcaggccc acgatttccc aagatggcac cacttccaga agctcgagtg      5640
     acaccctatg tccgtgcatt tacgcatatc ggcatagatt attgcgggcc attttcgata      5700
     cgtgtacggc ggtacgaagt gaagaaatgg gtgatgctcg tgacatgcct aacggtacga      5760
     gcagtgcacc tcgaagtagt cggaagccta tcgacggagg cgtgcaagat ggccatccga      5820
     cgattcatag cgcgacgagg atcaccgcta gagatatata gcgaccaggg aacaaacttt      5880
     gttggtgcaa gcagggagct caaggaggag atagcaagca tcaacaggga tatggctgga      5940
     acgttcacta acgccgacac acaatggcgc ttcaaccctc ctgcaacccc acatatgggt      6000
     ggcgtatggg agcgtcttgt gaggtcggtg aaaacagcgc taaggactat ctcatcaggg      6060
     aggaaaccgg acgaagaaac gttctacacc tacctaaccg aagtggagtc catcgttaac      6120
     tcccgccctt taacccatgt gccactggaa cacgaggatg gggaagcact tacgcccaac      6180
     cgttttttgt tgctaagctc cagtggcgtg gtgcagccaa ctcaacctcc ggtagtcagc      6240
     ggatcagcgc tgagggctaa ttggagccaa atccaacacc ttttggatct attttggagt      6300
     aagtggacaa aggagtatct gcctacaata aactgccggt ccaagtggtt gacggatacg      6360
     aaacctctgc agcctggaga tctggtgatg gtggtagatt cagggttacg gaacagctgg      6420
     aaacggggca aaatagtaag aatttactac ggatcagatg gagttgtacg ccgagccgat      6480
     gttcagacgg ccaatggatt gctgcagagg tcggttactg gattggtcgt gctngaggtg      6540
     atgaagagcg gtacagctgc agaaggctgc cagcaatacg ggtcggggaa                 6590
//
ID   BEL-285_AA-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-285_AA_;
KW   BEL-285_AA-I; BEL-285_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-502
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2579-2579 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 502 BP; 198 A; 105 C; 89 G; 108 T; 2 other;
     tgttggagaa actgatcacc cggcaacact gacatcagtt gacagtccga attcgacctg        60
     acttcgaaac gtcacaatga cagacaacga cacacataac gaatacttag acacacgtgt       120
     aatctacact caagacgatt gttaaacacg ataaacattg aatttgtacc acgttagtta       180
     acaataaatc taaaactgaa ataagctgaa tttaaacaat tagacgaagt tagactttgt       240
     aagtacacga caatgaacta catgcagacg aaataaataa tagacatata acgttnatac       300
     aggacggaca ggacagttgc aagaccagtt agacacggac aattaaacaa caggaaggac       360
     ttaaaattgt aagtagacat ggactaacta agaccgttaa tgacacttac taaaacgaat       420
     tacagctnaa agcaatactc caccacatcc gagtttgcta aatagagcgt ccgaaattcc       480
     gtgcctaagg ctggccgcaa ca                                                502
//
ID   BEL-286_AA-I repbase;    DNA;    INV; 6148 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-286_AA_;
KW   BEL-286_AA-LTR; BEL-286_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6148
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2580-2580 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5175-5753] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(675..4547,4551..6104)
FT                 /product="BEL-286_AA-I_1p"
FT                 /translation="MFLRSGRPVRLNFSLPATPHLPTISTPVASVAEQKIQ
FT                 HVEEKAKTKMAESIASLSQCCERAQGKVTRIQQAVQAANLDHEKFSIHALK
FT                 LYKKTVESAYEEYNEHLNKIYLVDPTRKTEFEPKFVDFEELYEFTCIALCE
FT                 MIEAYEVSKKTLELVNRLDVHAAPSSSQVRFPPTIVLQQAALPTFDGKYEH
FT                 WFKFKQMFRDIADKCTADSAATKLHYLDKALVGKAQGAIDAQIIRDNDYEG
FT                 AWRSLTQQFENLPALINDTINKLLHLKPMTCESYQQLKALIDDVDKCVSSL
FT                 EFHGLNVDKLSEAILTTLISTKLDADSRKVWESNVKRGQLPVYKQMMTALR
FT                 DHLNILERCENARTTRSRTANPPTRAQQTASKVHTATTTQKADDTCPLCSS
FT                 KHSADKCDEFKILDVKRRYDKAKQFGLCFMCLKRGHRTSNCKVTATCSKCS
FT                 KRHHSLMHPEENFTKEKSAAPVKPAAGDATGEKPGIGSSSETTVAQCSAKC
FT                 SDDDSKQVLLGTAIVNIFDAAGVGHRCRMLLDSGAMANFMSQSLAEFLRIR
FT                 KQGVDLPIVGVNGMRSTVRHKVHANVQSQYSDYEFCLDYLVVPRVTGTLPQ
FT                 STVNVENWPIPTTLRLADPKFYEPAQVDLLVGAEAFYEILRAGRIRMSPDL
FT                 PMLIESRLGWLISGRVKTATTIGTVRVLQATVDEANEDLVKLMKMFWSIDD
FT                 QSVDVGSPEDDCERHFVETHSRTADGRYKVRLPFKGDVGDLGMTRQMAEKR
FT                 FYQLERHLEKNPDQQKLYRQFMEEYLALGHCRIVENPEASGNLGYYLPHHC
FT                 VIRPDSSTTRLRVVFDASMKSSSGTSLNDLLKIGPQVQDPLFSITLRFRLP
FT                 KYVFTADVPKMYRQILIHDDDTKFQKVLYREQSSQPLKEIELTTVTYGTAT
FT                 APFLATRVLNQLAEDEQENFPKASKVVKKSFYVDDVLSGADTLDEAREIQQ
FT                 ELLALLARGGFGLHKWCANDAELLQDIPIELREKQMDFQNHDINVTIKTLG
FT                 LSWNPVGDHFFFQVRPMDGENVSVTKRQVMSDIAKLYDPLGLLGPTVVIAK
FT                 LIMQDLWKGRLQWDEPLAESQLATWTKLRRELPEIVGRKIPRRVTTDAASY
FT                 QELHGFSDASRKAYGCCVYIRNVQSEGPAVMNLLCAKSRVAPLKELDRQEK
FT                 DDMKPAELTTPRLELCAALLLAQQIAKVTEALEIDVNRVVLWSDSTIVLGW
FT                 IESMKPDVPVFVRNRVLQIRKLAGKFEWKYVPTNANPADLISRGLYPKQLI
FT                 KSDLWWGGPVFLRSNDGESVLLSLFETVDAPGEQVVEAASEIVAATAVAEN
FT                 RLLKVIMNNSDYRKLEKVFGFAMRFIRNCRVKIEERRRGKLTREDYRMAQH
FT                 AMVKIVQAEVYREEIKRVKKNEAVKGKLANLKPELENATSLLRVGGRIRYA
FT                 FLPEDQKHPLILPEKHHFTEILIEALHRENLHVGLNGLLAVIRKNFWPVNA
FT                 KRSINRVLRRCVKCFRVQPKDTDQHMGDLPKCRVTVADPFSRAGVDYAGPV
FT                 FLKQGRLRAPVKGYIVLFVCMCTKAIHLELVTSMTTESFLAALQRFVGRRG
FT                 NVHELYSDNGKNFVGAQRQLKELMKALNSQQLKKGIDDFRQPRGINWNFLP
FT                 PKAPHQGGLWEAGVKCVKYHLHRVLNESNLTYEEMNTLLIQIEAVLNSRPL
FT                 CQQSDDPVDYRALSPGHFLIGRELTAIPEPLYHEVRDNALTKYLIIQKRKQ
FT                 ALWRRWSDEYLTDLQRRGKWFKTPSLIRTGMMVVLKEDNTPPKTWKLGRIT
FT                 ATHAGKDGIIRVVKVRTATGEYCRPTTQVVVLPIADNE"
XX
SQ   Sequence 6148 BP; 1723 A; 1360 C; 1662 G; 1399 T; 4 other;
     tggtcgtttt cgatccggat atgttcgaac agtgaataag nttccggcac cggtgaaaag        60
     tgccctgaaa gtggattccg cctcgtgaaa cgcgaagttt tcgcttgcgg agtgacagaa       120
     atctgcctct tgtcgaatcg tgttaatgga ttccgcctcg tgaaacgcgg tgattgcgct       180
     tccggaatgg cagaaatctg cctccgccct ctgtgacttg tttttgggca acgcagaaaa       240
     agttcaggaa cacgttgtaa cgtgtcggga gtgatttcgt catggctgag ccattcgaaa       300
     aagtgatttg gtgttgatcg ctgcactgcg gtattttgac cgctgcacgg cggaatttcg       360
     atccgttcga tggagaacgg aggaagaaaa gngtgatctc ggcttggttc tggaaacatt       420
     gatagtattc tgctacgcgt agcataagaa gtttgcacag tgtgcactga acagaatcta       480
     gcagtgttat tgatgagctt ctggaagaaa gctcaagtag gctgtttgaa cncggaagaa       540
     cctcgcacga gataagtgat cggcgaaaaa atcggaagag caatcgccga agtgaagtga       600
     acataacctc ataaattgag aagacgctgt gattgaagtg ctaaaaaaca aaaagaaaaa       660
     ggcgaaagaa agtgatgttt ctccgttccg gacgtcctgt aaggctgaat ttttctcttc       720
     cggcaacacc ccatcttccg acgatatcga caccggtagc atccgtcgcc gagcagaaaa       780
     ttcagcacgt ggaggaaaag gcgaaaacca agatggcgga aagcattgcg tctttgagcc       840
     aatgttgcga gagagcacaa ggtaaggtta ctcgtattca acaagccgta caagcagcta       900
     accttgatca tgagaagttt agtattcacg ctctgaagct gtacaaaaaa acagttgagt       960
     cagcctatga agaatacaac gagcacctga acaagattta ccttgtcgat cctacgcgta      1020
     aaacggaatt cgaacctaaa ttcgtggatt ttgaggagct ctacgagttt acctgcatag      1080
     cgctatgtga aatgattgaa gcttatgaag tttcaaagaa aaccctagaa ttggttaaca      1140
     gacttgatgt gcatgcggcg ccttcgagtt cccaagtacg attccccccg accattgtat      1200
     tacagcaggc agcactaccg acatttgacg gcaaatatga acactggttc aagttcaagc      1260
     agatgttcag agatattgcc gacaaatgta ctgccgactc tgccgccacc aagctccact      1320
     accttgataa ggcattggtt ggcaaagcgc agggtgcgat tgacgctcaa ataattcgtg      1380
     ataatgatta cgaaggtgcg tggaggagcc taacccaaca gttcgaaaac ctgccggccc      1440
     tgattaacga tacgatcaac aagttgttgc atttgaaacc aatgacgtgt gaatcttacc      1500
     aacaattgaa ggcactaatc gacgacgtag acaagtgcgt tagctcgttg gagttccacg      1560
     gtttgaatgt agacaaatta tcagaggcca tattgacgac gctgatttct acgaaactgg      1620
     acgctgacag tagaaaggtt tgggaatcga atgttaaaag aggacaacta cctgtttaca      1680
     agcagatgat gacagcactt cgtgatcacc tgaacatctt ggaacgttgt gaaaacgcga      1740
     ggaccacaag gtcgcggacc gcgaatcctc caactcgggc tcaacaaact gcaagcaagg      1800
     tgcacacagc gacgactacc cagaaagccg atgatacctg ccctctgtgc tcaagcaagc      1860
     atagtgctga taaatgcgac gaattcaaga tcttggacgt gaagcgacgc tacgacaagg      1920
     ccaagcaatt cgggctttgc ttcatgtgcc ttaagagagg tcatagaacg tcgaactgta      1980
     aagttaccgc aacgtgctca aaatgctcca aacgccatca ttcattgatg catccggaag      2040
     aaaactttac gaaggagaag tctgctgcac cggtgaaacc tgctgccgga gatgctaccg      2100
     gagagaaacc tggtatcggt agcagcagtg aaacgacagt ggcgcagtgt tcggcaaagt      2160
     gcagtgatga tgactcgaaa caagtgttgc tagggacggc aatagtgaat atatttgatg      2220
     ctgccggagt ggggcacaga tgccgtatgc ttttggactc tggtgcaatg gcaaacttta      2280
     tgtctcaatc gctggccgag tttctacgaa ttcggaaaca gggtgtagat ctaccgatcg      2340
     tcggagtaaa tggaatgaga agcaccgtga ggcataaggt gcacgctaat gtacagtcgc      2400
     agtattcgga ttacgagttc tgtctggact acctggtggt ccctcgggtg accgggacgc      2460
     tgccgcaatc gacagttaac gtggagaact ggcctatacc taccaccttg cgtctggcgg      2520
     acccgaagtt ctacgaaccc gcccaagtcg acctgctagt cggcgctgaa gcattttatg      2580
     aaatcttgcg agccggtagg atcaggatgt ctcctgacct tccaatgctg atagagagca      2640
     ggctaggatg gctgatatcc gggcgagtga aaactgcaac gacgatcgga acagtgcgag      2700
     tgttgcaagc cacagtcgac gaagcaaacg aagatctcgt gaagctgatg aagatgttct      2760
     ggtcgatcga cgatcagtcg gttgacgttg gatccccgga agatgattgt gagcgacatt      2820
     tcgtggaaac gcacagcaga actgcagacg gacggtacaa ggtacgacta ccgttcaaag      2880
     gagatgttgg agatcttgga atgactcggc aaatggccga gaagcgtttc taccaattag      2940
     aacgccacct tgagaagaat cctgaccaac agaagctgta tcgacagttt atggaagaat      3000
     acctggccct cggacattgc agaatcgtcg agaatccaga agcaagcggt aatctgggat      3060
     attatttgcc gcatcactgt gtaatccgcc cagacagctc aacgacacga ctaagagttg      3120
     tcttcgatgc ttccatgaag agttcttctg gaacttcact caatgatctg ctcaagattg      3180
     gaccacaggt gcaggatcca ttgttcagca tcacgttgcg tttccgtcta cctaagtacg      3240
     tctttacggc ggacgtgccg aaaatgtacc ggcagattct gatacacgac gacgatacga      3300
     aattccagaa ggtattgtac cgagaacaga gttcgcagcc actgaaggag atagaattga      3360
     caacggtcac atacggtact gcgactgcgc cattcttggc gacccgagtc ctcaatcagt      3420
     tggctgagga tgagcaggaa aattttccta aagcgagcaa ggttgtgaag aagagttttt      3480
     atgtggatga tgtactttcc ggagctgata cgttggacga agcaagggag attcagcaag      3540
     agctcctggc attgttggct agaggcggct ttggattgca caagtggtgc gcgaacgatg      3600
     ctgaactact acaggatatt ccaatcgaac tccgagagaa gcagatggat ttccagaacc      3660
     acgatatcaa tgtaacaatc aagacgcttg gtttgtcctg gaatcctgta ggcgatcatt      3720
     tcttcttcca agtgaggcca atggacggtg agaatgtcag cgtgactaag cgtcaagtga      3780
     tgtccgacat agcgaagctt tacgatccgt tggggttact gggtccgaca gtcgtaattg      3840
     ctaaactgat catgcaggat ctttggaagg gccgactgca gtgggatgag ccgttagctg      3900
     agagccaact agcaacgtgg acgaagctga ggcgagaatt accggagata gtaggaagga      3960
     agattccacg aagagtgact acggacgctg caagttatca agagctgcat ggattttcgg      4020
     atgcctctcg gaaggcctac ggatgctgtg tatacatacg gaatgtgcaa tcggaaggac      4080
     cagctgttat gaatttactg tgtgcgaagt cacgagtggc tccgctgaag gaactagatc      4140
     gacaagaaaa ggacgacatg aaacccgccg aattgaccac gcctcgatta gagctttgtg      4200
     cggcgttact gctagctcag cagattgcaa aggtgactga agcgctcgag atagatgtga      4260
     accgcgtggt actctggtct gattcaacga ttgtgttggg ttggatagaa tccatgaagc      4320
     cagacgttcc cgtctttgtc cggaaccgtg ttctgcaaat tcgtaagttg gcagggaaat      4380
     tcgaatggaa gtatgtgccg acaaatgcca atccagcgga tttgatttcg cgtgggttgt      4440
     acccgaagca actgattaaa agtgatttgt ggtggggagg cccagtcttc ctgagatcga      4500
     acgatggtga atctgtgctg ctttcgctct tcgaaaccgt ggatgctcan cctggcgagc      4560
     aagttgtgga agctgcgagt gaaatagtgg cggcaacggc agttgccgaa aaccgattgc      4620
     tgaaggtgat tatgaacaat agcgactacc gtaagttgga gaaggtcttc ggattcgcga      4680
     tgaggtttat tcgaaactgc cgtgtaaaaa ttgaagaacg acgtcgagga aaattgacca      4740
     gagaagacta ccgaatggca cagcacgcta tggtcaagat tgtgcaagct gaagtgtacc      4800
     gcgaagaaat aaagcgtgtg aagaagaatg aagcagtgaa gggcaaacta gccaacctga      4860
     agcccgaatt ggagaatgca actagtttgc tcagggtggg cggccgcatt cggtatgcct      4920
     ttctcccgga agatcagaag cacccattga ttctaccgga gaaacatcat ttcaccgaaa      4980
     tactcatcga agccttgcat cgtgaaaatc tccatgtggg attgaacgga ttgttggctg      5040
     tgatccgcaa gaatttttgg cctgttaatg cgaagaggtc tatcaaccga gtgctacggc      5100
     gttgtgtgaa gtgttttcgg gtgcagccga aggacaccga tcagcacatg ggagacttgc      5160
     cgaagtgcag agtcacagtt gcagatccat tctctagagc tggcgtcgac tacgccggac      5220
     cagtcttcct taagcaaggg agactccgtg cgccagtgaa gggttacata gtgctatttg      5280
     tatgtatgtg caccaaggcc atacatcttg aattggtgac atcgatgaca acggaatcgt      5340
     ttctggcggc cctccagcga ttcgtaggcc ggcgtggaaa cgttcatgag ctgtattctg      5400
     ataacggcaa aaattttgtc ggagcccagc gccagctcaa ggagctgatg aaggcgttga      5460
     attcccagca acttaagaaa ggcatcgatg actttcgtca acctcgtggc atcaattgga      5520
     acttccttcc tcccaaggcc ccacatcaag gtggtctttg ggaggccgga gtaaaatgcg      5580
     tgaagtatca cctgcatcga gtgctcaacg agtcgaacct aacgtatgaa gaaatgaata      5640
     cgctgctgat tcaaatagag gcggtgctta actcgcgccc cctttgtcaa caatcggatg      5700
     atccagtgga ctacagagcg ctcagcccgg gacattttct catcgggcga gagctgacag      5760
     caattcccga gccgctgtat cacgaggtaa gggataatgc actaacgaag tacctaatca      5820
     tccaaaagag gaagcaggca ttgtggagaa ggtggtctga cgaataccta accgaccttc      5880
     aacgacgtgg aaagtggttc aagacaccgt cactcatccg gaccggcatg atggtggtct      5940
     tgaaagaaga taacactcct ccgaagacct ggaagcttgg aagaatcacc gcaacgcatg      6000
     ccggcaagga cggcataatc cgagtcgtca aggtgcgtac cgctactgga gaatactgtc      6060
     gaccaacaac gcaggtagtt gttctaccta ttgcagacaa cgaatagaaa cagtaaccca      6120
     gggttgtgcc tagcccaagg ggggtgta                                         6148
//
ID   BEL-286_AA-LTR repbase;    DNA;    INV; 246 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-286_AA_;
KW   BEL-286_AA-I; BEL-286_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-246
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2581-2581 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 246 BP; 71 A; 40 C; 51 G; 84 T; 0 other;
     tgttacagct aatgaaaaag agaagcaaat ttagggttaa ttttatgaat tagttttgct        60
     tttttgttta cggtgtaaag cgccgctttt gctcaaccga gctgtcagat gaatttccgt       120
     ttccgctaca agtttttcac ttgctctcgc gaagagaaga cgtgataaat cgattgttaa       180
     aaccgcgtgt gaataaagag ttgaattaca gtccacatgt tttatttgat ttgagctatc       240
     cgaaca                                                                  246
//
ID   BEL-287_AA-I repbase;    DNA;    INV; 6338 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-287_AA_;
KW   BEL-287_AA-LTR; BEL-287_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6338
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2582-2582 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5385-5945] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1257..2723,2727..6338)
FT                 /product="BEL-287_AA-I_1p"
FT                 /translation="MNALNFIPRQGSTPVQRSQTRSVDPTVVNDEVVYSLN
FT                 RNQLAARQAVSKDLPEFSGNPEDWPLFFSVFNSSTQLCGFSNEENMLRLRK
FT                 CLKGKALDAVKCRLLHPSNVQGVMTTLKMLYGRPETIIQAIVRKIRSLQPP
FT                 NLERLDTVIQFALSVENLVATVEACEIGDFMYNASLRYELVEQLPPTLKLD
FT                 WAKNCRNNPSPNLSDFSSWLRSIAEDASAVSISVGNEHRSRGGKKDGYLNH
FT                 HTEEESTINSSNAQTSQRSVRECVGCKGSCTSLAQCERFKELSCDSRWAVI
FT                 REFKACRKCLRQHNGPCKQRKECGTDGCSFLHHPLLHSERKQTVDTAPTPA
FT                 TVSAQPSNNPMNNMSSTCNVHQAQSEILFRIVPVLLHGPSKTLRTYAFIDD
FT                 GSELTLMEQGLANELGVKGPEKSLCLRWTGGTNRTEDLSQVVNFHISSLGN
FT                 PTNKYELSAVHTVRNLQLRPQTLLVPELQKKYRHLDGLPLESYRVSPRLLI
FT                 GLDNASLGNVMKCHEGKLNEPIAIKTRLGWTIYGSCSRDTNAFTHINHHSV
FT                 ELCHCDKKSNEDLHDAMKQYFSLESLGIIKPHQLLLSNEDRRANDLLETLT
FT                 RRTNGRYESGLLWRYDNVRLPNSKPMALRRWECLDRRMQKDGQLAQALSEK
FT                 VNDYIAKGYIRKLTTEELETSHNRIWYLPMFPVVNPNKPGKTRLVWDAAAI
FT                 SHGVSLNSVLLKGPDQLTSLLSVLIRFREFRVAVSGDIREMYHQVQIRPAD
FT                 QHCQRFFWKENEADSSPSTYVMQVMSFGACCSPSTAQYVKNTHAMKYEHNY
FT                 PEAVDAIIHQHYVDDMLISAETEEKAIQLAADVKMIHESGGFEMRNWVSNS
FT                 TAVVAALEGEGTKEKCMSIGEANTTERVLGMWWDTSSDCFTFKLSSRHDAA
FT                 LLSGSKRPTKREVLRTLMMVFDPLGLISHFLMFLRIILQEIWRSSVEWDEE
FT                 IHDSQFEKWLIWLRILPQVANIKIPRCYRSITSSEEGNIVQMHTFVDASEN
FT                 GFAATAYLRFQEGSTVECALAGAKTRVAPLKFLSIPRSELRAAVIGVRPAD
FT                 TIVGSLTTKIQKRFFWTDSRDVVCRLHSDHRRYSPYVGARVTEILDTTNLG
FT                 DWRWVPSKLNVADEGTKWKNTPDLTNSSRWFRGPEFLLESEEQWPTSSQPI
FT                 RITDTELRPYLHLHGKTLEPIIDVSRFSQWFTLLKTTAYVLRAIKNLQCSI
FT                 RKTSRTIGPLTNNELVEAECYLYQVAQRSAYDEEILMMSSNPSGQLEKRIS
FT                 KSSSLFQLCPFIDGKGVLRSRGRTNACRFVDSSIINPIILPRGHDVTKLLV
FT                 FGVHQKYLHQNHETAINELKQRYYIPRIKAVYKSVRSSCQFCKNERARPIA
FT                 PLMSDLPPCRLAAYSRPFSHIGVDYFGPMTVSIGRRTEKRWGVLVTCLTIR
FT                 AIHLEVAHSLSADSCIMALRNVIARRGTPITIYSDRGTNFVGSNTELKAGL
FT                 KELDQEKIMKEFISTNTTWSFIPPLSPHMGGAWERLVRTVKQNLGRLRPNR
FT                 TPTEETLRNMLIEVEQIVNSRPLTEIPLDDDQSPVLTPNHFIMGSCNGVPP
FT                 WTCFDDNPVALKENWRQSQAMANQFWKQWVHDYLPSLTRRAKWFTEVKPIK
FT                 INDIVVIVDERLPRNCWPKGRVIATRIAQDGQVRRATVQTASGIYERPTVK
FT                 LAVLDVGVGGNATQTDLRCIEGGE"
XX
SQ   Sequence 6338 BP; 1877 A; 1505 C; 1551 G; 1401 T; 4 other;
     aatttttaca aaattctgta aaggactaag gaatggcgag cacaaagtcc agcggtagct        60
     cccacggccg acgaaacgac gctgtacaaa ttggtgtagc cggggtagga aatacggata       120
     ttaacagcaa gaaccatccg gagcaaaagg agccggagac gacgggacag ttggagaacg       180
     ctgcccagac ttattcaaat acagcggggc agacagtatc acagacggta aacnaacaag       240
     caagtaagtc tcagtcagag gtcatcgctg aaccccctct tagccaacgg caacaggtta       300
     tgccgaccag agtggtgagt actgaaaaag gagctattca aaagtctcac gggttacaaa       360
     ccgtaacaac gaaaactaaa gatccagtca aggtccccca tgcccccatt gtaaacgtgc       420
     ccctaagacg aaatcctccg cgtcgcgtcc gcgaaaagat cgtgagtagt tgcgggttat       480
     gcgtggaggc cgacgacgaa agaatggtcc agtgcgacga ttgcgaaacg tggtatcatt       540
     tcgagtgcgt cgatgtgaac gaatcaatcg ccgaaatcag ttgggtgtgt cccggatgtg       600
     cacacgtgac cataataaag acccccagta gaaaccggaa atcaatttgt gatccagtga       660
     atccgcccta caacgatgcc gcttcgaaca agtccgctgg taagtccagt aggcgcagtg       720
     acgttaaacg aagaatcgag ctgcaactgc aaaaactaga agaagagagg aaattgcagt       780
     tgaagtacct ggagcagaaa tacagtttgc cggaagagtt agagagtgaa ggttcatctg       840
     cggcaagtga cgtgagatca tttgtcgata atgcgtcgaa agtggaacag tggatgatca       900
     acacggagaa ctgcggtgat gattctggcc tcgtcgacgg aaacttggaa gatggaggag       960
     atttgaacta ttcttcggac gaagaggccc actcttctgc aaggcacaca aaatctagaa      1020
     tgtcaaatag aaccttcaat ttcccgattc cattttcaaa accgtcacat gaagaatcgg      1080
     nttcaaatta ccagcgagtg catcgcgttc aaaccgctgg tcatccggga atttcgtttc      1140
     tacctcctct acgcgaagca acggttcaaa atattcagcg aacgtcgcgt caacaaggca      1200
     acggtcgacc agaagtacat tttcagcctg aaaaccagag ggaaactgga gccttcatga      1260
     atgcactgaa ctttattcca aggcaaggat caactccggt ccagcgatca cagactaggt      1320
     cagtggatcc cacggtggtg aacgacgaag tcgtctattc cttaaatcgg aaccaactgg      1380
     ctgccaggca agccgtctcg aaggacctgc cggaattcag cggaaatcca gaagactggc      1440
     cgctattctt ctcggtcttc aattcgtcca ctcagctatg tggattttcg aacgaagaaa      1500
     acatgctgag gctacgaaag tgcctaaaag ggaaagcctt ggatgcagtc aagtgccgac      1560
     tgcttcatcc ctccaacgta caaggagtaa tgaccacact caaaatgctt tacgggaggc      1620
     ccgaaacgat catacaagcc atcgttagga aaatccgctc actacagcct ccaaacctcg      1680
     aaagattgga cactgtaatc cagtttgcac taagtgtcga gaatttagtt gcgacagttg      1740
     aagcgtgtga aataggagat ttcatgtaca atgcatccct acgttacgag ctggtagaac      1800
     agttaccacc aacattgaaa ctagactggg caaaaaattg ccggaacaat cctagtccca      1860
     atttgtcgga tttcagttca tggttacgtt ccattgcgga ggacgcaagc gctgtatcca      1920
     tctcagtcgg caatgaacat cgttccagag gcggaaaaaa ggatggatat ctgaatcatc      1980
     acacagaaga ggagtcaacg atcaattcgt caaatgctca aacgagtcag agatctgtcc      2040
     gagagtgcgt cggttgcaaa ggaagctgca caagtcttgc gcagtgcgaa cgttttaagg      2100
     agctgagctg tgattctaga tgggcggtaa ttagggagtt caaagcgtgt cgaaagtgct      2160
     taaggcaaca taacggaccc tgtaagcaga gaaaggaatg cggtacagat ggttgttcgt      2220
     tcctgcatca ccctctactg catagcgaaa ggaagcaaac ggtggacaca gctcctaccc      2280
     cagcaacagt gtctgcgcag ccctcaaata atccaatgaa caatatgagt tcgacgtgca      2340
     atgtccatca agcgcagtca gaaatcctgt ttaggatcgt cccggttctc ctccatggac      2400
     catcnaagac gctgagaacc tatgctttca tagacgatgg ctctgaactt acgttgatgg      2460
     agcaaggact ggcgaacgag ctaggagtaa aaggacctga gaagtcttta tgtttgcgat      2520
     ggaccggagg taccaaccga acagaggacc tttcgcaagt agtaaacttc catatttcaa      2580
     gcctaggtaa tcctacaaat aaatacgagc tttcagcagt tcacactgtc agaaacctgc      2640
     agctccgacc acaaacgctg ttggttcctg aattacagaa aaaatatcgc catctggatg      2700
     gtctgccact agagtcatac cganatgtga gccctcgtct tctgatcggt ttagacaatg      2760
     ccagtttggg aaatgtaatg aagtgtcacg aaggaaagtt gaacgagcct attgcgatca      2820
     agactcggct aggatggacg atatatggaa gctgttccag agatacgaac gcattcactc      2880
     atatcaacca tcacagtgtg gaactctgcc attgtgataa aaaatcaaac gaagatcttc      2940
     acgatgccat gaaacagtat ttctcgctag aaagcttagg aattatcaag ccgcatcaac      3000
     tattgctgtc caatgaagac cgcagagcaa acgatttgtt ggagacactg actaggcgca      3060
     cgaatggacg atacgaatcg ggtcttttat ggcgatacga taatgtcaga cttccaaata      3120
     gtaaaccaat ggcgctaaga cgatgggagt gcttagaccg tcgcatgcaa aaggacggcc      3180
     aactagcaca ggcactgtcg gaaaaagtaa acgactacat agccaagggt tacataagga      3240
     agcttactac agaagaactc gagacaagtc acaacagaat ttggtacctt cctatgtttc      3300
     ccgtcgtgaa tcccaataag cccggaaaga caagactcgt ttgggatgca gcggctatct      3360
     cccacggagt gtcattaaac tccgtactcc tgaaagggcc cgaccagtta acttcgctcc      3420
     tgtcagttct gattcgtttc cgcgagtttc gggttgcagt ctccggggac atccgcgaga      3480
     tgtaccatca agtccaaata aggccagcag atcaacactg ccaacgtttc ttctggaaag      3540
     agaacgaggc cgactcgtct ccaagtacat acgtcatgca ggttatgtcc tttggggcgt      3600
     gctgttctcc cagtaccgct cagtatgtta aaaacaccca cgcaatgaaa tatgagcaca      3660
     actaccccga agccgtcgat gctatcattc accagcacta tgttgacgac atgctgatca      3720
     gtgctgaaac ggaggagaag gcgatacaat tggcggctga cgtgaaaatg attcacgaat      3780
     ctggaggctt cgaaatgcgc aattgggtct cgaactcaac agcggttgtg gccgcactag      3840
     aaggagaggg aaccaaggaa aaatgtatga gcattgggga agccaatacc actgagaggg      3900
     ttcttggaat gtggtgggat acttcatcgg actgcttcac tttcaaactg tcctcccgcc      3960
     acgacgctgc gctgttgtct ggcagtaaac gacctacgaa gcgcgaggtg ttacggacac      4020
     tgatgatggt gttcgacccg ctcggcttaa tcagccactt cttgatgttt ctgcgaatca      4080
     ttctgcaaga aatctggaga tcatctgtcg aatgggacga ggagattcac gactctcaat      4140
     tcgaaaagtg gctcatttgg ttgcgaattc ttcctcaagt ggccaatatc aagataccta      4200
     gatgctacag gtcaattaca tcttctgaag aaggcaatat tgtgcaaatg cacaccttcg      4260
     tagacgcaag cgaaaatgga ttcgcggcga cggcctactt gcgatttcaa gaaggaagta      4320
     ccgtggaatg tgcactagct ggagcaaaaa ccagggtggc accactaaaa tttctttcga      4380
     taccgcgttc cgaactgcgg gctgcagtca taggagtaag gccggcggac acgatcgttg      4440
     gatctctgac gaccaaaatc caaaaacgtt ttttctggac agactccaga gatgtcgtgt      4500
     gccggcttca ttcagaccat cgacggtata gcccgtatgt tggagcgcga gtcaccgaaa      4560
     ttttagatac aacgaacctt ggagactggc gctgggtccc atcgaagcta aatgtcgcag      4620
     atgagggaac gaaatggaag aacactccag atctaaccaa ctccagtcga tggtttcgtg      4680
     gacctgaatt cctcctagaa tcagaagaac aatggcccac atcatcacag cccattcgta      4740
     tcaccgacac tgagcttcgc ccgtacttac accttcatgg taagaccctt gaaccgatca      4800
     tcgacgtgag ccgcttcagc cagtggttca ctctattaaa aactacagca tacgtgctca      4860
     gagctatcaa gaatttgcaa tgtagtattc gaaaaacttc tagaacaatc ggaccactca      4920
     ccaacaatga actggtggaa gccgaatgct acttatacca ggtagcccaa agaagtgcat      4980
     atgacgagga gatattgatg atgtcttcaa atccatcagg acaactggaa aagcgaattt      5040
     ccaaaagcag ctctctcttt caactttgcc catttataga tggaaaagga gttcttagaa      5100
     gtcgtgggcg aacaaacgcc tgccggttcg tagatagtag cattattaat cccatcattc      5160
     ttcctcgtgg acatgatgtt acaaaactcc tcgtattcgg cgtccatcag aagtatcttc      5220
     accaaaacca cgagactgca ataaatgagt tgaaacaacg ctactacatt ccacgcatta      5280
     aagcggtcta caaatcagtt cgcagtagct gtcaattttg caaaaatgaa cgagctcgtc      5340
     cgattgcgcc actgatgagc gatttaccac cctgtcgcct tgcagcctac agtcgaccgt      5400
     tcagtcacat aggagtggac tatttcggcc caatgacggt atccatcggc cgtcgaacgg      5460
     agaaacgttg gggcgtttta gtaacatgtc ttactatacg cgccatccat ttagaagtcg      5520
     cgcactcact atccgccgac tcctgtataa tggcgctacg caacgtcatc gctaggaggg      5580
     gtactccgat aaccatatac agcgatcgtg gaacgaattt cgttgggtcc aatacggaac      5640
     taaaggcagg gctcaaagaa ttggatcaag agaagatcat gaaagagttc atctcaacga      5700
     acacgacgtg gagttttatt cctcctttgt ctccgcatat gggtggggca tgggagagac      5760
     tagttagaac ggtgaagcag aacttgggca ggttacgtcc aaatcgtacg ccaacagaag      5820
     aaacgctaag aaacatgtta atagaggtag agcaaatcgt aaattcaaga ccgctgacag      5880
     agattcctct cgacgacgat caatctcctg tactgacacc gaaccatttc atcatggggt      5940
     catgcaatgg ggtaccacct tggacctgct tcgatgacaa ccccgtcgcg ttgaaggaga      6000
     actggcgcca atcccaggcc atggccaacc agttctggaa acagtgggta cacgactatc      6060
     taccttccct gactcgcagg gccaaatggt tcacggaagt aaagccaatt aaaatcaacg      6120
     acatcgtggt gatcgttgac gaacgtcttc ctcgtaattg ctggcccaaa ggacgagtga      6180
     ttgctactag gatagcacag gacggccagg ttagaagagc tacagtgcag acagccagtg      6240
     gaatatacga acgaccaaca gttaagctcg ccgtgctaga cgttggcgta ggaggaaatg      6300
     caactcagac ggatcttcga tgcattgaag ggggggag                              6338
//
ID   BEL-287_AA-LTR repbase;    DNA;    INV; 624 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-287_AA_;
KW   BEL-287_AA-I; BEL-287_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-624
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2583-2583 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 624 BP; 215 A; 107 C; 111 G; 189 T; 2 other;
     tgttgatggc gccacgccta actgcgacct tactacaccg ctgagtgcgc caaccacacc        60
     catagattta aaggatcgta catcaagggg tgatcgcatt gaaggtcaaa agacacaata       120
     acgaagcgta ggtgcagaag gaaacaaatg aaagtgaaat cgatattgaa atttgttgct       180
     attacttaaa tctaatttga tcatacttac attctaattt aattatattt tttgcctaaa       240
     acggtaagat cggtgaattt gataacctaa tatgaattcg aacctatact atactatata       300
     caaacgggaa ttggattaga attactgaag aacactacgc cattgatata ttatattatc       360
     gaatctacga ggtgaganaa tgatctggta caccacgatt taaaatacta aataagttaa       420
     attcataaag gttccaactt ctaaattaaa atacgtcgtc atcaagttgt tgtgcgataa       480
     cgagaggtta ctacagtgag tatcatatac agttattttc gtgaactgag gctaacgttt       540
     tgatttgcac ttcaggaatt ttgtaactcg tcaataaagt accgttttaa caaaattggg       600
     atttctcgtn tcttatcgcc aaca                                              624
//
ID   BEL-288_AA-I repbase;    DNA;    INV; 6189 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-288_AA_;
KW   BEL-288_AA-LTR; BEL-288_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6189
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2584-2584 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5242-5802] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..3641
FT                 /product="BEL-288_AA-I_2p"
FT                 /translation="MSSRNKSDTNGGSKGDRSAKGSSRGDIGTPIGTQNVP
FT                 VVTITTAGVGQIFPGQSCKSCSGPDTEAMVQCDLCHEWHHFSCVGVTEDVE
FT                 NMSWCCPKCASATGVQQTTSTGIQQFPSTSSAIGQVNQLRQASEPKLPSNT
FT                 LRVTTRSAARKEINPQMLPSPVTAAEDSTALQRPDNPADSRRSEITSSGTA
FT                 KSNRSQRSLMLQLQKLEEENALQREYIQKKYTILERMSSPSGSSCDGGSSR
FT                 VESRIKKTNTLLEEGKLNTKYSASVNSSQQAAQSPLSNLSVHQSTSLQNSL
FT                 AVAPRWTPSHASLLGVGNCSFGSPLQNARISAYHGSLVHPPANRDTKQPPL
FT                 VTVPNEQQGQYRPSIIPRSHVYSLSGRSAVPLSPGFVPHEHSGRYQPPSSQ
FT                 QLAARQAISRDLPPFSGQPDEWPIFLSTFNNTTVMCGFSDDENIIRLQKCV
FT                 KGKAYEAVKSLLMHPSNVRRVIDTLRMLFGQPESIVHSLITKINSLPPMKE
FT                 DKIETIVEFAVNVRNFCATVDACGLEEHLYNISLLHQLVAKLPPSIKLDWA
FT                 RYRQTLPAANLASFGDWVYSLAEAASTIVTPPAALDAKSNRNDSRGGKKGN
FT                 AFVNAHSELSAAPTTFHSAKPAASRVENDRCPICNGGCKAVDKCKRFHELS
FT                 RDSRWAAVRESGLCRRCLRLHKGVCKAKPCGKDGCELKHHQLLHNDKKVGA
FT                 GLNTHAPRLSEPGNGTQTHDCNVHRTTSSSVLFRYLPVILHGKNRTVQTYA
FT                 FFDEGSELTLLDEELAEELQLEGGLLPLCLRWTGGAERNETSSRIVNLEVA
FT                 GVHNQNKRFPLRSVRTVKELLLPLQTLDATELKQLYPHLQGLPIQSYRGAR
FT                 PRILIGMKHVSIGVVLKCKEGNFEDPIAVKTRIGWTVCGKLSRDTEDAAQC
FT                 MVHMCSEAQDSDDQLHLAMKAYFALDSLGVAKPNLLLSSEDQRAKNLLEST
FT                 TKFLGNRYEVGLLWRHDNIRLPDNRAMALRRHQQLQKRLERDETNLSEILH
FT                 EKLADYVEKGYARKLTQEELDMPRSRIWYLPIFPVTNPNKPGKTRLVWDAA
FT                 AKTFGVSLNSALLKGPDLLCSLLTILLQFRQGRFGISGDIREMFHQILMRT
FT                 EDQQCQRFFWTDKDGELAVYVLQVMSFGASCSPCCAQFVKNLNAERFHTSH
FT                 PTAVEAITKRHYVDDMLASVDEENEAIRLAEEVKYVHSQDLRI"
FT   CDS           3658..6153
FT                 /product="BEL-288_AA-I_1p"
FT                 /translation="MCNSKAVLTALQQRDVVEKDMDLSSEMAVEKVLGMWW
FT                 STETDEFMFKVGWNRYDSLLLTGRRPPTEREMLRVLMTIFDPLGLVAHFLI
FT                 FLKILLQEVWRSKIQWDEKITGDLYRKWVLWTSVLPQVETVRIPRCYSSSM
FT                 VVNSCTDIQLHTFVDASENGFAAIAFLRFDCNGTTKCSIVASKARVAPLKF
FT                 ISIPRLELQGAVLGARLSQTIITSLSLRITRRVYWTDSRDVLHWINSDHRR
FT                 YSQFVAFRVSEILETSEPDEWRWVPTRLNPADDGTKWDGVPDLTSESRWFT
FT                 GPDFLWCSETKWPETPPLRTPATTELRPHLLVHRSVPNSSPINVNKFSKWK
FT                 RLRNCIAFVYRYLANLRLKAKRKPIHTGPLMMSELKLAETFLFRVAQREGF
FT                 PDEVAALEQAQSTASIKLLPKSSSIYQLSPWLDEQGLLRMKSRIGACKYAA
FT                 DEAKQPIILPRDHHITALVIMQYHHKYHHCNHETVVNEIRQRFHIPRIRVG
FT                 FAKARRTCQRCKNEAAVPRPPIMADLPAGRLAAFQHPFTYAGVDYFGPMEV
FT                 VVGRRVEKRWGMLITCLTVRAIHIELVHSLSTNSCIMGLRNFISRRGSPRR
FT                 IYSDRGTNFIGASRELSEAIAAINQSAMIDEFVSPDTEWVFNPPAAPHMGG
FT                 CWERLIRTVKKNLMAIRPTSRLTDEELRNTLVEIENTVNGRPLTHVPIDSD
FT                 SAPALTPNHFLLGSSNGSKPLTTLDDSGTTLRRSYRTSQMLANQFWKRWVN
FT                 DYLPEIARRTKWFAPTKPISIGDIVVIVDPRLPRNCWPKGRIILVNKGRDD
FT                 TIRSATVQTANGVYERPVTKLAVLDVQREA"
XX
SQ   Sequence 6189 BP; 1706 A; 1595 C; 1506 G; 1382 T; 0 other;
     aattacaaaa ttcatttaat tcgatcattt cgaatatgtc aagccgcaac aaatcggaca        60
     cgaacggtgg gtcaaaaggg gaccggtcgg ccaaaggaag tagtagaggt gatatcggaa       120
     ctcccatcgg aacccaaaac gttccagtgg tgacaatcac aacggcagga gttgggcaga       180
     tcttcccagg acagtcgtgt aagtcttgtt ctgggcctga cacagaagct atggttcagt       240
     gcgacctctg ccatgagtgg catcatttct catgtgtggg agttactgaa gacgttgaga       300
     acatgagctg gtgttgtccc aaatgcgcgt ctgcaaccgg ggtccagcaa acaacttcaa       360
     caggcattca gcagtttcca tcaacgagta gtgccatcgg tcaggtcaac cagcttcgtc       420
     aggcttcgga gccgaaactt ccttcgaaca cgttgagagt gaccactagg agtgccgcac       480
     gaaaggaaat caatccacaa atgctaccat cgccggtgac cgcagcagaa gattccacag       540
     ctctacaaag gccagacaat ccggcagaca gcagacgatc agaaataact tcctcgggga       600
     cagcgaaatc caaccgatct caaagatcgc tgatgttaca gcttcaaaag ctagaagaag       660
     aaaacgcact tcaacgtgag tacatacaaa aaaagtacac cattctcgag cgtatgagca       720
     gcccttccgg atcgtcgtgc gacggaggat ccagtcgggt agaaagccgg atcaagaaga       780
     cgaacacctt gctggaagaa ggaaagctga atacaaaata ctccgcctcg gtcaacagtt       840
     cccagcaagc cgcacagtcg cctctttcga acttgtccgt acatcagtca acgtctctcc       900
     agaacagcct agcagtagcc cctagatgga cccccagcca tgctagtctt ctcggagttg       960
     gtaactgttc gtttgggagt ccattgcaga atgccaggat ctccgcttat catggtagtt      1020
     tagttcatcc acctgccaat cgcgatacga agcagccgcc gctggtaacc gtgcctaacg      1080
     aacaacaagg tcaataccga ccatcgatca ttcccagaag ccacgtgtat tcactgagtg      1140
     gtcgcagtgc agtaccgctt tcaccgggtt ttgtaccgca tgaacattca ggccgatatc      1200
     aaccgccaag cagtcaacaa cttgctgctc gacaagctat atccagagat ttgcccccgt      1260
     tttcaggcca acccgacgaa tggccaattt tcttgtcgac tttcaacaac accacggtga      1320
     tgtgtggatt ttcagacgat gagaacatta tccgcttgca gaaatgcgtt aaagggaagg      1380
     catatgaggc agtgaaaagt ttactcatgc atccgtcaaa cgtacgacgt gtaatcgaca      1440
     cactgcgcat gctttttgga cagccagagt cgattgttca ttccctgatc accaaaatca      1500
     acagcctgcc accgatgaag gaggacaaga tcgagactat agtggaattc gccgtcaacg      1560
     tacggaattt ctgtgcgaca gtcgacgcat gcggattaga ggaacatttg tacaatattt      1620
     cgctgctaca tcagctcgtc gctaagctcc cgccatctat caagctagat tgggcacgtt      1680
     atcgacaaac cctccctgcg gcgaaccttg catcttttgg agattgggtt tattcactag      1740
     ctgaagcagc aagcacgatc gtgactccac ctgctgctct agatgcaaag tcaaaccgaa      1800
     acgattcccg cggcggcaag aaaggaaatg ctttcgttaa cgcacactct gagttatcag      1860
     ccgctcccac aacgtttcat tcagctaaac cagcagcaag tcgagtggag aacgataggt      1920
     gtcctatatg taacggtggt tgtaaagcag tcgataaatg caagcgtttc cacgaactct      1980
     ccagagactc gagatgggcg gcagtgagag aaagtggact gtgccgtaga tgtctccgtc      2040
     ttcacaaagg cgtctgtaag gcgaaaccgt gtggtaagga tggatgtgaa cttaaacacc      2100
     atcaactgct tcacaatgac aagaaagtcg gcgcaggttt gaatacacat gcacctcgat      2160
     tgtccgaacc tggaaacggc acgcaaacac acgactgcaa cgtccatcgt acgacctcca      2220
     gttccgtgct atttcgatat ctgccggtga tacttcacgg gaagaatcgt acggtccaaa      2280
     cgtacgcttt cttcgacgaa ggatcagagc tgactttgtt agacgaggag ttggctgaag      2340
     agttgcagct cgaaggaggc cttctaccac tatgtcttcg atggactgga ggagcggaac      2400
     ggaacgaaac aagttctcga atcgtcaatc tggaagtggc aggagtccac aaccaaaaca      2460
     aacggttccc tctcagatcc gtcagaactg ttaaggaact tctactacca cttcaaaccc      2520
     tagatgctac tgaattgaag cagctctatc ctcatctaca agggctacca atccaatcgt      2580
     accgtggagc acgaccgagg attcttatcg gcatgaagca tgtttccatc ggagtggttc      2640
     tgaaatgcaa agagggcaac ttcgaggacc ctattgcagt gaaaacccgt attggttgga      2700
     cagtatgtgg aaagttgagc cgtgacacag aggacgccgc acagtgtatg gtccacatgt      2760
     gctccgaagc gcaggactct gatgaccagt tacatctggc tatgaaagca tatttcgccc      2820
     tagacagtct cggtgtcgcg aaaccaaacc ttctcctgtc ctccgaagat cagcgtgcta      2880
     aaaatttgct tgaatcgacg accaaattcc tcggcaaccg ctacgaagta ggactactgt      2940
     ggagacatga caacatccgc ttacccgata atcgtgcgat ggctctgcgc cgtcatcagc      3000
     agctgcaaaa gagattagag cgagatgaga cgaatttatc ggaaatcctc cacgagaaac      3060
     tcgccgacta tgtggagaaa ggctacgcga gaaagcttac acaagaggaa ctcgatatgc      3120
     cacgttcccg catctggtat ttgcccatat tcccggttac aaaccccaac aaaccgggta      3180
     aaaccagact tgtgtgggat gcagcagcta aaacctttgg cgtttcgctg aattcagctt      3240
     tgttgaaagg tcctgaccta ctttgctcgc tgttgaccat tctccttcaa tttcgtcagg      3300
     gacgctttgg aatttctgga gacatccgcg agatgttcca tcagatcctg atgcgaaccg      3360
     aagatcagca atgtcagaga ttcttttgga ccgacaagga cggagagcta gctgtctacg      3420
     ttttgcaagt catgagtttt ggtgccagct gttccccatg ttgcgcgcaa ttcgttaaga      3480
     atttaaatgc ggagcgattc cacacgagcc atccaaccgc agtggaggca ataacgaaac      3540
     gccactatgt tgatgatatg ttggcaagcg tcgacgaaga aaacgaggcg atacggctag      3600
     ctgaggaagt gaaatacgta cattcacagg atttgcggat ttgagattcg caattggatg      3660
     tgcaactcca aagccgttct cacggcttta cagcaacgag atgtagtgga aaaggacatg      3720
     gacctctcgt cggaaatggc cgtcgaaaag gtcctcggaa tgtggtggag cactgagacg      3780
     gacgagttca tgttcaaagt aggatggaac cgctacgatt cacttctgtt gacgggccga      3840
     cgaccgccta ccgaacggga gatgctgaga gtcttgatga cgatattcga cccgttgggg      3900
     ctcgtcgcac acttcctgat attcttaaaa atactgcttc aagaagtttg gcggtccaaa      3960
     attcagtggg acgaaaagat cacgggagac ttgtacagaa aatgggtact ctggaccagc      4020
     gttcttcctc aggtagaaac tgttcgcatt ccacgctgct acagctcttc gatggtagta      4080
     aacagctgta ctgacattca actccacacg ttcgttgatg cgagcgaaaa cgggtttgct      4140
     gcgatagctt ttctccgatt cgactgcaac ggtacaacga aatgctccat tgttgcctcc      4200
     aaggcacgag tggctccact aaagttcatt tcaatacccc gattggagct acaaggtgct      4260
     gtgcttggtg caaggctttc gcagaccatc atcacttctc tctctctgcg aattactcgt      4320
     cgggtgtact ggacagattc ccgagacgtg ctacactgga taaactccga ccaccgtcgc      4380
     tactcacaat tcgtagcttt tcgagtaagt gagatcctcg aaacatcaga accagatgag      4440
     tggcgatggg ttcccacaag gctcaaccca gccgacgacg gaacaaagtg ggacggtgtg      4500
     ccggatctta catcggagag tagatggttc accggtcctg atttcctatg gtgttcggaa      4560
     acgaaatggc ctgaaacccc tcccctgcgc acaccagcta caactgaact tcgaccgcat      4620
     ttgctagttc atcgttcagt cccgaacagt tcacctatta acgtgaacaa attctcaaaa      4680
     tggaaacgac tacggaactg cattgccttc gtttatcgct acctggccaa cttgcgactt      4740
     aaagcgaaac ggaagccgat tcacactgga ccgctgatga tgtcagagct aaagttagct      4800
     gaaacttttc tgttccgcgt agctcaacga gagggatttc ccgatgaagt agctgctctg      4860
     gaacaagcgc aatcaactgc ctccataaaa cttcttccaa agtctagttc gatctaccag      4920
     cttagcccat ggttagatga acaaggtctt ttgagaatga agagcaggat cggtgcgtgc      4980
     aaatacgctg cagatgaagc caaacagcca ataattctgc cccgagatca ccacatcacc      5040
     gcactggtta tcatgcaata tcaccacaaa taccaccact gcaatcacga aaccgtcgtg      5100
     aacgaaatca ggcaaaggtt ccacattcct cgtattcgtg tcggctttgc gaaagctcgt      5160
     agaacctgcc aacgatgtaa gaacgaggct gcagttcccc gcccacctat tatggcagac      5220
     cttccggcgg ggagactcgc agcgttccaa caccccttca catacgcagg cgtagattat      5280
     ttcggcccta tggaggtggt cgtgggtaga cgggtggaaa aacgctgggg tatgttaatt      5340
     acctgtctga ccgtccgtgc cattcatatt gagctagttc actctctgag cacaaattcg      5400
     tgcataatgg gcctgagaaa cttcatctca cgtagaggat ctccgagacg aatctacagc      5460
     gaccgcggta caaattttat cggcgccagc cgagagctat ctgaagccat agcggctatc      5520
     aaccaatcgg cgatgataga cgagttcgtt agtccggaca cggaatgggt tttcaacccc      5580
     ccagcagcac ctcacatggg tggctgctgg gaaaggctga ttcggacagt taagaaaaac      5640
     ctcatggcaa ttcgtcctac ctctagactc acggacgaag aactaagaaa tacactcgtg      5700
     gaaatcgaaa acaccgtcaa cgggcgccct ctgactcacg ttccaattga tagtgactcg      5760
     gccccagcgt tgacccccaa tcactttctt ctcggatcgt ccaacggatc aaagccactg      5820
     acaactttgg acgatagtgg aaccacatta cggcgaagtt accgcacctc ccagatgctc      5880
     gccaaccaat tctggaagcg ttgggtgaac gactaccttc cagaaatagc gaggcgaacg      5940
     aaatggttcg caccaacgaa gccgatatcc atcggtgaca tagtggtcat cgttgatccc      6000
     aggcttccca gaaactgttg gccgaaggga agaatcatcc ttgtcaacaa aggacgtgac      6060
     gatactatcc ggtcagcaac ggtacaaaca gccaatggag tgtacgaacg accagttaca      6120
     aagctagccg tcctagatgt ccagcgcgaa gcctagtaag ccaaccggaa gttggcgtac      6180
     ccgggggag                                                              6189
//
ID   BEL-288_AA-LTR repbase;    DNA;    INV; 750 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-288_AA_;
KW   BEL-288_AA-I; BEL-288_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-750
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2585-2585 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 750 BP; 277 A; 119 C; 150 G; 204 T; 0 other;
     tgttgccggc gcgcatccca ctgtactggc aacgcttttg gatgcactac cacaagaaga        60
     catagttgta cctaaatgga atctactgat agggaagctg tcagatatga tgataagcga       120
     gatggaaagg agtaaaagga tgaggagttg aatgaaaaga aaacctaaaa actagatata       180
     caatgaattg tgagcttatt gaattcgcta ttattgaagt taaagctaaa gttagttgct       240
     gataaatctt aaatctaatg ttagtcgttg ttaaaactta aatctacttg agagtacggt       300
     aagaagtgaa gttattaata acatacagta taatataagc taaaacagtt ttcccgatag       360
     tgtgccccac ccgaacgaac agtatctcga agttggcgtc ttgattagtc gaatacattg       420
     aacataaaat taaataaaac gttggtaagt tgctgaaaat caggaagact agtggagaat       480
     caaataacat gcaaaaggtg taaaactttg aatacaaatg ctataaatta gaatctctat       540
     gacctttagg taccgtcacg caacaattac cggcagcaat attatgactg ccatgctagg       600
     agcgcagtaa atgtgagtag caattaaagt aagatatttt aaggcaaatc aatatctcta       660
     accattctaa caggaatttt gtaatccccc ggcttaaata aaattggatt aaaaatacag       720
     aaactgctct tgttgcacgg tgtgccaaca                                        750
//
ID   BEL-289_AA-I repbase;    DNA;    INV; 6995 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-289_AA_;
KW   BEL-289_AA-LTR; BEL-289_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6995
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2586-2586 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5974-6531] - Integrase core
CC   'TCGGC' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5254..6993
FT                 /product="BEL-289_AA-I_3p"
FT                 /translation="MRGPAFLYEDEKDWPKNKFEVEDTEEELRSAVVCSHF
FT                 LSSPIIDVSRFSKYERLLRSVAYAYRFGEKLLRRIRKTKSMETEDVSSEEL
FT                 RNAERVLWRFAQSDGYPDEVATMNRNARTAPESRRALSRSSPLANLPPMLD
FT                 EHGLLRVDSRIAAADCLEQDTKFPIILPKGHPVTNLLLDWYHRTFRHANNE
FT                 TVVNEVRQKFHIPKLRAQIRSVAKRCQWCRIYKATPVIPKMSQLPQFRTTP
FT                 FLRPFTFVGVDYFGPYLVKVGRSAVKRWVAIFTCLTVRAIHLEVVHTLSTD
FT                 SCKKAVRRFIARRGAPQEVYSDNGTNFIGASKELEDELRIINSRLGSTFTD
FT                 TNTQWRFNPPSAPHMGGCWERMVRSVKTALGSLPMSQKLDDESFVTLLAEA
FT                 EHMVNSRPLTFLPLDSEEQESLTPNHFLMLNSSGVRQPVKAPVDERRALKS
FT                 SWELIQHKLDTFWSRWIVEYLPIISRRSKWFSDVAPIKEGALVVVVDGKIR
FT                 NQWVRGRVCRTYPGKDGAVRLADVETPAGILKRRAVCNLAILDVAGHGKLE
FT                 LSGRGDKDGSGCCTAVSRTCGGVEPVFVRHAGE"
FT   CDS           join(25..1968,1972..4986)
FT                 /product="BEL-289_AA-I_1p"
FT                 /translation="MQQRSFVRQTRSQTRATQNAATRGSQPTSSDGALRVE
FT                 EQIGNFEPSVIDAEHGEEFDCAVCKRANNAELYMVQCGECKHWYHFSCAKV
FT                 DKATVRSRDFICAECVPKVPPPPASSRTGRSSTSSSRRAQIARDLQRLEDE
FT                 RCIREKLEEERLRNEKSLIEKAINEKLEREKEYLARKHELLRQQDEDVVSV
FT                 KSGRSSRSHASSRQKVEEWFDKQQISSGGDPAIDSRSKPQDHQPIPPEHSS
FT                 GPVGSSTPVEVREFSVSGHQRALAGMTESVPRTIDSISIGDSPEIQDNFAN
FT                 HPFGQQQRDSERQVQVPNLLPLVNIQPYVRLLDEDQPPKSSELARNANPLN
FT                 ADHLPRIVPKLLGNPRPYAVWQREVSDMRRQHFRDQRRPDELEEAQRQQQR
FT                 EQDSIRLLKRSEEQREQDRQRLQEIEAMLKRQQDVEAQHQAENDSRRKREL
FT                 DLVNRLKLFEQQYAQEQARRVEEKQSFLAKEQQLIEQLEDMRLTCEQYSAA
FT                 QQYSAIEHLSAAEQRSATGECPVAEKRTSAEQRSEEYPRFAANLPTSAEQH
FT                 GNYSETIQRGLAVSTNPPTAPVSSSQIEPNKFTQNFRCDERNIATSCPSVA
FT                 SQDRRVGTPHTNFVPPMLGPPLVDSLGQSPLVPNASANVNRNAPLHYQSVG
FT                 PTSHQLAARQVISKELPVFSGDPIEWPLFISSYNHSTTARGYTDSENLLRL
FT                 QRSLKGAAKEAVSSFLLHPSTVSQVLSTLQTLYGRPEQIVHNLVAKVRGTP
FT                 APKAERLETLIQFGLAVQNLCGHLQAVGMDNHLSNPILLQELVDKLPANIK
FT                 FNWALRQENLPMVDLKTFSEYMRKVTTATSGVTNFSFASKPMKEENPKSKG
FT                 KAFVNAHMTHERKDTSPTVDRREQTKSAKGKGGEPARTCPACGAHDHTAAS
FT                 CAAFKKLSIDGRWNFAKDNKLCRRCLVSHTRWPCEGEVCGINNCEKRHHRL
FT                 LHSEPTKKQPVTDAAVTIHRQPISSTLFKILPVTLYGKNGSVNTYAFLDDG
FT                 SSVTIVEQAIADKLGEKGRAHSLCIHWTSGINKKMATTELETLSISEPGCD
FT                 TRFNLSEVYTVENLGLPEQSVDVGQLAKEYQHLRRLPVRSYRGAVPGLLIG
FT                 LSNSHLLTTTKLREGQEREPIAAKTRIGWVVCGRLRGGEANFQHRQMHICA
FT                 DTSEHDLHEYVREFFSVESLGVAAAPNLEGSEDQRARRILEETTVRTASGK
FT                 FETGLLWREDSIEFPDSRPMAERRFRCLEKRLEKEPELYDSVRKQVADYAL
FT                 KGYVHVVKKDEMAEFDPRRTWYLPLGVVPNPNKPGKVRVIWDAAAKVNGVS
FT                 LNSMLLKGPDLLTPQLQVTFRFREREVAFSGDIQEMFLQVGIRKEDRSALL
FT                 FVYRNSPSEPLVTMVSDVAIFGATCSPAQSQYAKNLNATEYEREYPKAAAA
FT                 IKKKHYVDDYLDSVDTEEEAVELALQVAEVHRKAGFHIRNWVSNRSSVLEA
FT                 IGEVNPTTVKSLSMNSQSGFERVLGISWLPGEDLFCFTICLQKVLESETAP
FT                 TKRAMLSFVMKIYDPLGLVGSLVVQGKILLQDVWRAKVDWDDKIPEDLFTR
FT                 WKLWLQGLKDLDNVRIPRSYFPGYDPSCYDDLELHIFVDGSEQAYSSVAYF
FT                 RVRDRGQIRCALVASKTKVAPLQLTSVPRLELQAA"
XX
SQ   Sequence 6995 BP; 1867 A; 1701 C; 1964 G; 1460 T; 3 other;
     ttctcaaaga attgaggcat cagtatgcag caaagatcgt ttgttcgcca aactcggtcg        60
     caaactcgag cgactcaaaa tgcagcaacc aggggttccc aaccgacttc cagtgacggt       120
     gcacttcgtg ttgaagagca gatcgggaat ttcgagcctt cggtgataga cgcggagcac       180
     ggtgaagagt tcgattgtgc ggtatgtaag cgggccaaca acgcggagct ttatatggta       240
     cagtgcggag aatgcaagca ctggtaccat ttttcttgcg cgaaagtgga taaagctaca       300
     gtacgatcca gagatttcat ctgtgcggaa tgcgtaccga aagttcctcc gccccccgct       360
     agctctagga ctggccgatc tagcacttcg agctcacggc gagcgcagat tgcccgggat       420
     ctccagaggc tggaggacga aagatgtata cgagagaagc tggaagaaga gcggttgcgg       480
     aacgaaaagt cgctgatcga gaaggcgata aacgagaagc tggagcggga gaaagagtat       540
     ttggctcgga agcacgagct actgcgccag caggatgaag atgtggtgag tgtgaagagt       600
     ggacgaagca gtcggagcca tgcaagcagc cgacaaaagg ttgaagagtg gttcgataag       660
     cagcaaatat cctccggtgg cgaccctgct atcgattctc gttcgaagcc acaagaccat       720
     caaccgattc caccagaaca ttccagtggg ccagtcggat cgtcaacacc cgtggaagtc       780
     cgtgaattct ccgtcagtgg tcaccagcga gccctagcag gaatgacgga atcagtccct       840
     cgcactatcg acagcatttc tatcggagac agtccggaga tccaggacaa tttcgcgaac       900
     catcctttcg gccaacaaca acgcgattcc gagcggcaag tgcaagtccc taatctccta       960
     ccgctggtca acatccaacc gtatgttcgc cttctggatg aagatcaacc tccgaagagt      1020
     tcggagttag cccgaaatgc aaatccgctg aatgcggacc accttccgag gatcgtcccc      1080
     aagctactcg ggaatcctcg accatacgca gtgtggcagc gcgaagtatc cgatatgcga      1140
     cgtcagcatt tccgtgatca gcggcgtcct gatgagctgg aagaggccca acgtcaacag      1200
     cagcgtgagc aggattcgat ccgactactg aagcgatccg aggaacaacg cgagcaggac      1260
     aggcaacgcc ttcaagaaat cgaagccatg ttgaagagac agcaagacgt cgaagcgcag      1320
     catcaggcgg aaaacgattc acggaggaag cgagaactgg accttgtcaa ccgattgaag      1380
     cttttcgaac agcagtacgc gcaggagcaa gctcggcgtg ttgaagagaa gcaatccttt      1440
     ttggctaagg agcagcagtt gatcgagcag ttggaagaca tgcgcctaac ctgcgagcaa      1500
     tattcggcag cgcaacagta ctcagcgatc gaacatctat cggcggcgga acagcgctcg      1560
     gcaacgggag agtgtcccgt agcggaaaag cgcacatcgg ctgaacaacg ttcggaggag      1620
     tacccgcgct tcgcggcgaa cttgcccaca tcggctgaac agcatgggaa ctactcagaa      1680
     actatccagc gaggtctagc cgtgagtaca aacccaccaa cggcgccggt aagtagttcc      1740
     caaattgagc cgaataaatt tacccaaaat tttcgatgtg atgagcgaaa catagcgaca      1800
     tcttgtccaa gtgtcgctag tcaggatagg agagtaggaa caccccatac aaattttgta      1860
     cctcctatgt tagggcctcc tttggtagat tcgttagggc aatcaccgtt ggtaccgaat      1920
     gcttccgcaa atgtgaatcg aaacgcgccc ttgcattacc agtctgttcn gggtccgacg      1980
     tctcatcagt tggccgcgag acaagtcatc tccaaagagc taccggtgtt cagtggcgat      2040
     cccatcgaat ggccactctt cattagtagc tacaaccatt ccaccacggc gcgtggctac      2100
     actgactccg agaatttgct acggttgcaa cggtcgctga aaggtgcagc caaggaagct      2160
     gtcagcagtt ttcttcttca cccgtccacc gtatcgcaag ttctgtcaac tcttcagacg      2220
     ctgtacggga ggccggagca gattgttcac aaccttgtgg ccaaagttcg aggaacgcca      2280
     gcccccaaag cggaaaggct ggaaacgttg atccagtttg gactagccgt ccaaaatttg      2340
     tgtggtcact tgcaagcagt gggaatggac aatcacctgt ctaaccctat cctgctacag      2400
     gagcttgtgg ataagctgcc ggccaacatc aagttcaact gggcactgcg tcaagagaac      2460
     ttgccgatgg tcgatttgaa aacgttcagc gagtatatga ggaaggttac taccgctact      2520
     agtggcgtga cgaacttctc gtttgcatcg aagccgatga aggaggagaa ccccaaatcc      2580
     aagggtaagg cgtttgtaaa tgcncacatg acccatgaac ggaaggatac atcgccgacc      2640
     gtcgaccggc gagagcagac taaaagcgct aaagggaaag gaggtgaacc agctagaacc      2700
     tgtccagcgt gcggcgctca cgaccacacg gctgcgagct gtgcagcttt caagaagcta      2760
     tcgattgacg gacgatggaa tttcgcgaag gacaacaaac tttgtcgccg atgtctggtt      2820
     tcacacacac gttggccatg tgaaggcgaa gtctgtggta tcaacaactg tgagaagcgt      2880
     catcatcgtc tcctacattc ggagcccacc aagaagcaac cagtcaccga cgccgctgta      2940
     accatccatc gtcaacctat ttcatcgaca ctgttcaaga tcctgccagt gacactgtac      3000
     gggaagaatg gttcagtgaa tacgtatgca ttcttggacg acggttcgtc ggtaacaatt      3060
     gttgagcaag cgattgcaga caaattagga gagaaagggc gagcgcattc cttgtgcatc      3120
     cattggacca gtggaatcaa caagaaaatg gcgacgacag agctagaaac gcttagcata      3180
     tcggagccag ggtgtgacac gcgatttaat ttgtccgaag tgtacaccgt cgagaacctg      3240
     ggactaccgg aacagtcggt ggacgttgga cagctggcga aggagtatca acatctgcga      3300
     cgtctaccag tcaggagtta ccgaggggcc gttcctggac tgctgattgg attgagcaac      3360
     tcgcacctgt tgacaacgac gaagcttcga gaaggtcaag agcgagaacc aatcgctgca      3420
     aagactcgca tcgggtgggt agtatgtggc cgcctacgcg ggggagaagc aaatttccag      3480
     catcggcaaa tgcatatatg cgccgacacg tcggagcatg acctccacga gtacgttcgt      3540
     gagtttttct cggttgagag ccttggagtt gccgcagctc caaacttgga gggaagtgag      3600
     gaccaacgag cgcgtagaat cctcgaagag actacggtgc ggacggcgag cggaaagttc      3660
     gagaccgggc tcctctggag agaagattcc atcgagtttc cggacagtcg tcccatggca      3720
     gagcgtcgat ttagatgcct cgaaaagcgt ttggaaaagg aaccggagtt gtacgacagc      3780
     gttcggaaac aagtagctga ctacgcattg aagggctacg tccacgtagt aaagaaggat      3840
     gaaatggccg aatttgatcc gcggcgtacg tggtatcttc ccctaggcgt ggtgccgaac      3900
     ccaaacaagc ctggaaaagt gcgagtgatt tgggatgcgg ccgcaaaggt gaatggagtg      3960
     tcgttaaact ccatgctcct caaaggacct gatcttctga ctccgcagct gcaagtcacc      4020
     ttcagatttc gagaacgcga agtggcgttt tccggcgaca ttcaggaaat gttcctgcaa      4080
     gtgggaatcc ggaaggagga tcgaagtgcg cttttgttcg tctaccgtaa ctcaccgagt      4140
     gaacctttag tgaccatggt atccgacgtt gcaatcttcg gagcaacgtg ttctcctgca      4200
     cagtcacagt atgcgaaaaa cctcaatgca acggagtatg aacgagaata cccaaaggca      4260
     gcggcggcca tcaagaagaa gcattatgtc gacgactacc ttgatagcgt cgacacagaa      4320
     gaggaagctg tcgagctagc attgcaagtt gccgaagtcc accggaaagc aggtttccac      4380
     atacgcaact gggtgtcgaa tcggtcctcg gttttggaag ccatcggaga agtgaacccg      4440
     actactgtga aaagcctatc gatgaatagc cagagtggat tcgagcgggt gcttggcata      4500
     tcgtggctgc caggcgagga tttgttttgc ttcacgattt gcctacaaaa ggttctggag      4560
     agcgagaccg caccgactaa gagggcgatg ctgagcttcg tgatgaagat ctacgatccg      4620
     ctgggactag tcggctcgct cgtagttcaa gggaagatcc tgttgcaaga tgtctggaga      4680
     gcgaaagtgg actgggacga caaaataccc gaggatctat tcacacgctg gaaactgtgg      4740
     ctgcagggtt tgaaggattt ggacaacgtg cgaataccgc ggagctactt cccggggtac      4800
     gatccttcct gctacgatga tctggagctc cacatattcg tagacgggag tgaacaagct      4860
     tactcatctg tagcttattt ccgcgttcga gaccgcggac agatacgctg tgcgctagtg      4920
     gcgtctaaga caaaagtagc tccactacaa ctaacttccg tacctcggct ggagttgcag      4980
     gccgccntaa tcggcgcacg tcttcgtaag accattgaag atggtcattc agtgcaaatc      5040
     aaacgcactt tctattggag tgattcaagc accgttgtct cgtggataag gtcggatact      5100
     cgacgatatc ggcagtacgt ggcgttcaga gtcaacgaga tcctgagcct gtcgaaaact      5160
     gaagagtggc gttggctggg aaccaaaatc aacgttgctg atgaggctac taagtgggga      5220
     aaaggtccaa actgcgagcc cgacagtcga tggatgcgcg gaccagcgtt tctatacgaa      5280
     gacgagaagg attggccaaa gaataagttc gaggtggaag atacagaaga agaattgcga      5340
     tcggccgtcg tttgcagtca cttcttatca tctccgatca tcgacgtgtc gcggttctca      5400
     aaatacgaac ggcttctgcg aagcgtggcg tacgcttatc gattcggtga gaagcttctg      5460
     cgacgaattc ggaaaacaaa gagcatggaa actgaagatg tcagcagtga agaattgcgg      5520
     aatgcggaga gggtcctctg gcggtttgcc cagtcagacg gttatccaga cgaggtggct      5580
     acaatgaatc ggaacgcacg cacggctccc gaaagcagac gagcactaag cagaagcagt      5640
     ccgctggcga atcttccacc aatgctggac gaacacggat tgttgcgcgt agacagtcgt      5700
     atcgctgccg cagattgcct tgaacaggac actaagtttc cgataatact gccgaaagga      5760
     cacccggtaa ctaacttgtt gttggactgg taccatcgaa catttcgtca tgccaacaac      5820
     gagacggtcg tgaacgaagt tcgccagaaa ttccacattc ctaagttgag ggcacagata      5880
     agatccgtag cgaaacgctg tcaatggtgc cgtatatata aagctacgcc agtaataccg      5940
     aagatgagcc agctgccaca atttcgaact acaccgtttc tgcgaccctt cacgtttgta      6000
     ggcgtagact acttcggtcc ctacctagtg aaagttggcc gtagtgccgt gaagcgctgg      6060
     gtagcgattt ttacgtgcct gacagttcga gctatccacc tggaggtagt gcacactttg      6120
     tctaccgatt cgtgcaaaaa ggcagtccga cgtttcatcg ctcgaagggg tgcaccacaa      6180
     gaagtatata gcgataatgg cacgaacttc ataggcgcta gtaaggaact tgaagacgag      6240
     ttgcggatca tcaacagtcg cttgggtagt actttcacgg acacgaatac gcaatggaga      6300
     tttaaccctc catcagcccc acatatgggt ggatgttggg aacggatggt tcgatccgta      6360
     aagaccgccc tcggatcatt gcccatgtca caaaaactag acgacgaatc gttcgtcact      6420
     ttattggcag aagcagagca tatggtgaac tcgcgaccgt tgacgttcct gccgctagat      6480
     agcgaggagc aggaatcgtt aacccccaac catttcctga tgctcaactc gagtggcgtc      6540
     cggcaaccgg tcaaagcacc agtagatgag aggagagctt taaagagcag ctgggagttg      6600
     attcagcata aactggatac gttctggagt cggtggatcg tcgaatacct cccgataata      6660
     tctcgacgat caaaatggtt cagcgatgtt gcaccaatta aagaaggagc gttggttgtg      6720
     gtcgttgacg gaaagatccg gaaccaatgg gttcgaggcc gtgtgtgccg aacatatcca      6780
     gggaaggacg gggctgtacg tctagcggac gtcgagacac ccgccggaat tttgaagagg      6840
     agagcggtct gcaatctggc aatcctggat gttgccggac atggaaaact ggaattgagc      6900
     ggtcgtggtg ataaggatgg tagcggatgc tgtacagctg ttagtcgcac atgtggtggc      6960
     gtcgaaccag tgttcgtacg tcacgcgggg gagga                                 6995
//
ID   BEL-289_AA-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-289_AA_;
KW   BEL-289_AA-I; BEL-289_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-303
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2587-2587 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 303 BP; 103 A; 62 C; 64 G; 73 T; 1 other;
     tgttgcgacg aatgcgtcta tcgacgcgcc ccccgaaaac ttcgaccgta tgggtacgga        60
     tatgtgagta gcgcatacat gcgtagacgg actgtcagag acggtgataa gggaaataga       120
     ttatcattgt tttgatacca tcgtgaaaac gaccttagaa aagtctaaat ctaaactata       180
     gtattaaata taaaaattga acttaaacta ccaagtacga gaccaattct ttgagctaat       240
     tatcaccggc aaaaaggtga attttgctac gaagatctcc gaaaggtanc cccgaccgca       300
     aca                                                                     303
//
ID   BEL-28_AA-I repbase;    DNA;    INV; 6058 BP.
XX
AC   supercont1.281;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_AA_;
KW   BEL-28_AA-LTR; BEL-28_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6058
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.281; Positions  495561  501618.
XX
CC   'CTAAG' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6058
FT                 /product="BEL-28_AA-I_1p"
FT                 /translation="MRAESDAHDCGACDKPNSADVGMVACDGCSVWYHYTC
FT                 AKVSPGVQQRSWRCCKCPPEMHPEVTGAKKKGGKKQPASLTVLGAASSENP
FT                 KSNNASQKKTSEKSKNSEKSRTLVVPNLAASDNTTPKKHPEVLAVEKSTHG
FT                 EMRSSKSSTSTARARAQLALQRLEAERRLEEQKLKEERERLEEERIRLEKE
FT                 RQLKEQEHAIKAKELAMQEKYLREKFELEEQIADDDSSRKSSVLSRKDRTS
FT                 AWLKSQHELSKQEDKSVSQYSEWSNLANHLAGPNHHQRPLELEVDRRQQEV
FT                 LGNPEIVPNLRAHRDAMAVGHNQSDGNRFRRPYDAGRSNASQSPSLHELES
FT                 AAIGLQPVSHGAGPNSEQIAARQIWPKKLPVFSGDPEEWPIFVHSFETANV
FT                 ACGFSDVENIIRLRECLRGPARDAVVTKLMFPQSVNAIMETLRRLYGRPEL
FT                 LVKNLLDKVRRAEAPKPERLESLINFGLTVQQLCDHLEAANLKGHLSNPTL
FT                 LGELVEKLPASIKLEWARFKRAYAEPTLKHFGAFMEELVYDASEVTSPIQQ
FT                 KTPVTKTEKDKPKEKGHVFSHEDAAEVQNHREERQPCPICGKTDHRVRNCE
FT                 RFQQLDLQARLKAVDRYKLCEICLFDHGQWRCRSRIRCNVGNCRDRHHPLL
FT                 HSSGRGPVQEQRQRQFRASECNAHERSQRSVLFRIIPVTLFNGNRKCETFA
FT                 FLDEGSSLTLIESSLARQLGATGVPEPLELRWTSSVKRNEESSKRVDFEIS
FT                 ARGQLQRYVLKNAHTVGELNLPSQSLAIDDLSERFPHLRNLPVSSYTEAVP
FT                 RILLGLENLSLFAPLDSCIGQPGEPIAVKSLLGWSVYGPEANAQPRKGFVN
FT                 LHECNCGADKELNDLVRQQFMMEDKMIAAIPFLESDDEKRARELLENTTKF
FT                 VDGRYETALLWKADDIDLPDSLPMAMKRLKSFEAQLAKDSDLRENVNQQIV
FT                 DYIQKGYVHKATEEELREINRRQVWYLPLGLVTHPKKQKKRLVWDGKAQVN
FT                 GISLNSQLLKGPDLLVSLPSVICKFREKRIGFGGDIREMFLQLRMRTADKY
FT                 FQCFLFRFDPRQPPEVYIADVAMFGATCSPCVAQHVLRVNADKWADEFPLA
FT                 ATAIKNKTYMDDYYDSADTPEEAATLAVQVKTIHARGGFEMRNWVSNCEEV
FT                 LKKLGESATVEPRPLQSTTEARWERVLGMLWHPKSDTLTFSTDLGEQLLPY
FT                 TLGELRPTKRIALKIIMSLFDPLGLLAPYLIHGRALIQDLWRSGVQWDEKM
FT                 RDEEFEKWTRWVELLPAISKLSIPRYYFIEANRLPHSMLQCHVFTDASEIC
FT                 YGAAVYFRTVDGSGRVQCSLVMAKSKVAPLKHLSIPRLELEAAVLGAKLLH
FT                 TVQTNHSLQPHEVYLWTDSSTVLSWIRSDHRRYKQFVAHRIGEILSLTETE
FT                 CWRWVPSKDNVADCLTKWVRDTEPDCNSRWFRGPAFLYNSEEMWPRQRVKT
FT                 NTAEELRSSYLLAHIFLPGRMLDVRRFSKWSVLLRTVAYVYRFIGNCRLRI
FT                 SRSPIETIRATKKQEKLLKCSLNASIVPLKQEEFLRAEQFLWRMVQGEHYP
FT                 DEVRTLLKNRNQPIEKWIAVERNSPLYRFSPFADELGIIRMEGRTVDAAYA
FT                 DFDTRCPIILPKDSDITRLLLDEYHRRYGHANKETVVNEVRQRFQISHLRT
FT                 AVDSTSRNCQFCKVNKCKPRPPRMAPLPEQRLTPNVRPFSYVGIDYMGPLE
FT                 VSIGRRKEKRYVAVFTCLVIRAVHLEVSYDLSSESCIMAIRRFTRRRGSPV
FT                 QIFTDNGTNFVGASRELQMQIDLECAGTFTDARTKWSFNPPSAPHMGGVWE
FT                 RMVRSVKEAMTMLDDGRKLTDEILWTTLVEVEGLINSRPLTYMPQDLDNPE
FT                 ALTPNHFIFGCSSGAHEPLEPPVDLGQTLRSSFLRSQQLAEVAWKRWSKEY
FT                 FPAINRRSKWLDEMRSLKVGDMVYVAEGKRRSWIRGIVDAVICGNDGRVRQ
FT                 AIVRTASGMLKRPVVKLAVMELGGSTEDPPLDPRGGG"
XX
SQ   Sequence 6058 BP; 1687 A; 1402 C; 1622 G; 1347 T; 0 other;
     aactcaaaga tttgacgccg tgatgcgagc agagagcgat gcccacgatt gcggtgcttg        60
     tgataagccg aattccgccg acgtaggcat ggtggcatgc gacgggtgca gtgtatggta       120
     ccactacact tgtgctaaag tgtcaccggg agtccaacaa cgatcgtgga gatgttgtaa       180
     gtgcccaccc gaaatgcatc cagaagttac cggagcgaaa aagaaaggag gtaagaaaca       240
     gccggcgagc ttgactgtcc tcggtgctgc atcgagtgag aatccgaagt caaataatgc       300
     cagccagaaa aagacctcgg agaaatcgaa gaactccgaa aaatcaagaa ccttggtcgt       360
     tcccaatctt gcggctagcg acaacactac tccaaagaaa catccagaag ttcttgctgt       420
     tgagaaatcg acccatgggg agatgcgatc ttccaaatcc agcacttcta ccgccagagc       480
     tcgagcgcaa ttagcattgc agcgattgga agccgagcga cgtttggagg aacagaagtt       540
     aaaggaagaa cgggagcgat tggaagaaga gcggattcgt ctggagaaag agaggcagtt       600
     gaaggaacag gagcacgcta tcaaggccaa ggagcttgct atgcaggaga aatatttgcg       660
     ggagaaattc gagctggagg aacagatagc cgacgatgat agcagtcgca aatcgagcgt       720
     gctcagtagg aaagatagga caagtgcctg gttgaaaagc cagcatgaac tgagcaagca       780
     ggaagacaaa agtgtgtcgc agtattcgga gtggtctaat ttggcgaacc atttggcagg       840
     gccgaatcac catcagcgtc cgttggaatt ggaagtggat cggagacagc aagaagttct       900
     gggcaatcca gaaatagttc cgaatctccg ggcccaccgt gacgctatgg ctgtaggcca       960
     taatcagtcc gacggtaatc gtttcagacg tccctatgat gcaggtagat caaatgctag      1020
     ccagtcgccg tcgttgcatg agctggaaag tgcggcgata ggattacaac ctgtttcaca      1080
     cggggcgggg ccgaatagtg aacagatagc tgcgagacag atctggccta agaagctacc      1140
     cgtattctcg ggcgaccctg aagagtggcc gattttcgtc cacagctttg agacagccaa      1200
     cgtcgcgtgt ggcttttcag acgttgaaaa catcattcgt ttgcgagagt gtctgagagg      1260
     cccagcgcga gatgccgtcg ttacaaaact gatgtttccc cagagcgtga atgcgataat      1320
     ggaaacgttg cggcgattgt acggaagacc tgagctccta gtgaagaatt tgctagataa      1380
     agtgcggcgt gccgaagcgc cgaaaccaga acgtttggaa tcgttgatca actttgggtt      1440
     aacggtacaa cagctgtgcg accatttaga ggccgcgaac ctcaaaggcc acctgtccaa      1500
     tcccacgcta cttggtgagc tagtggaaaa gctacctgcg tcaataaagc tcgagtgggc      1560
     gagattcaag cgagcgtacg cggaacctac tctcaaacac ttcggagcat tcatggaaga      1620
     actagtgtat gacgctagcg aagtcacgtc gccaatccag cagaagaccc cggttacaaa      1680
     aaccgaaaag gataagccaa aagagaaggg acacgtattt tcccacgaag atgctgccga      1740
     agtacaaaac cacagggagg aaagacaacc ttgtccgata tgcggtaaaa ccgatcatcg      1800
     cgtacggaac tgtgaacgct tccagcaact ggatctacaa gctcgcctta aggccgtcga      1860
     tcgttataaa ttgtgtgaga tttgtttatt tgaccacggt caatggagat gccgttcaag      1920
     aattcgatgc aacgtaggaa attgccgcga tcgtcatcac cccctactcc atagttcagg      1980
     gcgtggtcca gtgcaagagc agcgtcagcg acaatttcga gcctcggaat gcaacgccca      2040
     tgagcgatcg caaagatcgg tcctgtttag gatcattccg gttacgctgt tcaatgggaa      2100
     ccgcaaatgc gaaactttcg ccttcttaga cgaaggctcc tccttgacgc taatcgaatc      2160
     aagtttagcg cggcagcttg gagcaactgg cgttccagaa ccgttggaac taagatggac      2220
     gtcaagcgtg aaaaggaacg aggaaagttc taaaagagtg gattttgaaa tttccgcaag      2280
     aggacagctg cagcgttacg ttttgaaaaa tgcgcacact gtgggagaac taaatcttcc      2340
     gagtcagagc ttggccatcg acgatctgtc cgagagattc ccacaccttc gaaacctccc      2400
     tgtttcgtca tataccgagg ctgtccccag gattctccta ggattggaaa atcttagtct      2460
     gtttgcacca ctggatagtt gcatcggcca accaggagaa cccattgcgg tgaaatcgct      2520
     ccttggctgg tcagtttatg gtccggaagc aaacgcacaa ccgaggaaag gattcgtgaa      2580
     cctacacgag tgcaactgcg gcgcggacaa ggaactgaac gatctagttc ggcagcagtt      2640
     catgatggag gacaagatga ttgcagcaat tccctttctc gaatcagacg acgaaaaacg      2700
     cgcccgcgaa ttgctagaaa acaccaccaa atttgtcgac gggagatacg agaccgctct      2760
     gctttggaaa gccgacgaca tcgatcttcc cgatagcctt cccatggcaa tgaagcggtt      2820
     aaaaagtttt gaggctcaat tagctaagga ttccgatctg cgagaaaatg taaatcaaca      2880
     aattgttgac tacatacaga agggctacgt tcacaaagcc accgaagaag agttgagaga      2940
     gatcaacaga aggcaagtgt ggtacctacc gttgggtttg gtgacgcatc caaagaaaca      3000
     gaagaagagg ctcgtgtggg acggaaaggc gcaagtcaat ggaatttccc ttaactctca      3060
     gttattaaag ggccccgacc tactagtgtc ccttccatcg gtgatctgca aattccgtga      3120
     aaagcgcatc ggatttgggg gtgacatccg agaaatgttt ttacagcttc ggatgagaac      3180
     tgcggacaaa tatttccagt gcttcttgtt tcgcttcgat ccacgacaac ccccagaagt      3240
     gtacatcgca gatgtagcga tgttcggcgc cacatgctca ccgtgcgtcg ctcaacatgt      3300
     gttgcgagtg aacgccgata agtgggcaga tgaatttcca ttggcagcga cagcaattaa      3360
     aaataagacc tatatggacg attattacga cagcgccgat actcccgaag aagcggctac      3420
     gctggccgta caagtaaaaa ccatccacgc ccgtggaggg tttgaaatga gaaattgggt      3480
     aagcaactgt gaagaagtgt tgaagaagct cggagagagt gccactgtcg aaccgcgtcc      3540
     tctgcagtct acaactgaag cgaggtggga acgagttttg ggaatgttat ggcacccgaa      3600
     atcggacaca ctgacatttt caacggattt gggggaacag ttgctaccct acacattagg      3660
     agaactacgc ccaacgaagc gcattgctct aaaaatcata atgagcctgt ttgatcctct      3720
     tggattatta gcaccgtatc tgatccacgg acgtgctttg atccaagatc tatggagaag      3780
     tggggtccaa tgggacgaga aaatgagaga tgaagagttt gagaaatgga ccagatgggt      3840
     ggagttgctg cccgctataa gcaagctgag cattccacgc tactatttca tcgaagccaa      3900
     tcgtcttccc cactccatgc tgcaatgtca cgtttttacc gatgccagcg aaatttgcta      3960
     tggtgccgcg gtgtatttcc gcactgtaga cggttccgga cgagtgcagt gctcactagt      4020
     tatggcaaag agtaaagttg ctcctcttaa acatttgtcg atcccgcggt tggaattaga      4080
     ggcagctgtg ttaggtgcga aattgcttca caccgttcaa acaaatcact ccttacaacc      4140
     tcacgaagtt tatttgtgga ccgattcttc gaccgttctt tcatggattc gctcggacca      4200
     caggcgttat aagcagttcg tcgctcatcg tatcggggaa attctgtctt tgaccgaaac      4260
     ggaatgttgg cgatgggtac cgtcaaaaga caacgtagct gattgcttga cgaaatgggt      4320
     gcgcgacacc gagcctgact gtaacagtag atggttcaga ggtccagcgt ttttgtacaa      4380
     ctccgaagag atgtggccgc gtcagcgtgt gaagacgaac actgcggaag aactgcgttc      4440
     aagctacctt ctcgctcata tctttctacc cggtagaatg ctagatgttc gtagattttc      4500
     aaagtggagt gtgctattgc gaactgtggc atacgtttac cgatttattg gcaactgtcg      4560
     tttacgtatc tcaagaagcc cgatagaaac cattcgggcg acgaagaaac aggagaagtt      4620
     gctgaagtgt tcgctgaacg cctctattgt accattgaaa caagaggagt ttctacgggc      4680
     agagcagttt ctctggagaa tggtgcaggg cgagcactat cccgacgaag tacgaactct      4740
     gctgaagaac cggaatcaac cgatcgaaaa atggatagct gtggagagaa acagccctct      4800
     gtatagattt tcgccattcg ccgatgaact cggaatcata cgaatggaag ggcgaaccgt      4860
     cgatgccgct tatgctgatt tcgacacaag atgcccgata attctcccca aagatagtga      4920
     catcacacgc ctcctcctag acgagtatca tcgtcgttac ggtcatgcga acaaagaaac      4980
     cgtagtaaat gaagttcgtc aacggtttca gatttcacat ctacgaacag ccgtagacag      5040
     tacctcgcgc aattgccagt tttgcaaggt aaataagtgt aaacctcgtc ctcctagaat      5100
     ggctcccctg cccgagcaac gattgacacc gaacgtgcga cccttcagtt acgtcggtat      5160
     agactacatg ggaccgctgg aagtgagcat cggtcgacgc aaggagaaac ggtacgtggc      5220
     cgtattcacg tgtcttgtca tacgagctgt gcacttagag gtttcgtacg atctctctag      5280
     cgaatcgtgc ataatggcga tccgaagatt cacacgcaga cgcggatctc ccgttcaaat      5340
     cttcacagac aacgggacta attttgtcgg tgccagtcgt gagttgcaga tgcagataga      5400
     tctagagtgc gccggtacat tcactgatgc caggaccaaa tggtcgttca atcccccctc      5460
     cgctccccat atgggcggag tgtgggagcg catggtgcgg agtgtcaaag aagccatgac      5520
     aatgttggac gatggacgaa aactcactga cgaaatcttg tggactacgt tggtcgaagt      5580
     ggaaggattg atcaattcac ggcctcttac ttatatgcca caagacttgg ataatccaga      5640
     ggctttaacg cctaaccatt ttatctttgg ttgttcgtct ggcgctcatg aaccgctaga      5700
     accaccagta gatctgggac agacacttcg cagcagtttt ttacgctcac aacaactagc      5760
     ggaagtcgcc tggaagcggt ggtcaaagga atatttccca gcaatcaata gaagaagcaa      5820
     gtggttagat gaaatgagat ctctgaaggt tggtgacatg gtttacgtgg cagaaggcaa      5880
     acgaagatcc tggatcagag gcatcgtgga tgcagtcatc tgcggtaacg atggaagagt      5940
     ccgacaagcg attgtgcgaa cggcgtctgg tatgctgaaa cggcctgtcg tgaagttggc      6000
     ggtgatggag ttgggtggat caacggaaga ccctcccctc gatccacggg gcggggga        6058
//
ID   BEL-28_AA-LTR repbase;    DNA;    INV; 601 BP.
XX
AC   supercont1.281;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_AA_;
KW   BEL-28_AA-I; BEL-28_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-601
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.281; Positions  494960  495560.
XX
SQ   Sequence 601 BP; 186 A; 105 C; 122 G; 188 T; 0 other;
     tgttctggca gcacgggttc agatgttgtg cagaatccaa tcgagcgtgg gacgcacaac        60
     ggggactgtt aggggaacaa tagctattgt tgaaactgcg aaagtgaaat cacgatcgta       120
     tactttattg aaagtgtcga atattatttg ctatcttatt aatctattgc tctgaaattc       180
     tagttattta cggcattgtt aacttgtcgg ctacatttac tatcattgtg aattcattaa       240
     ctaaagtata tcggtaagaa ttctttgaaa acgtcacgag tcattatcat gaatcccctt       300
     atgttacact aggcttgtaa tctacagata cggaaatcac gcaatatcta atcatcaatt       360
     tagtggcgaa aggtatgagt actgttctac ttacgattac aataattaag tgaagtgttc       420
     tttaaaatag ggattagaag ccacagacca gaagcgtcat cgggtagagt tctaagccgg       480
     taggcaatac caaatgtaag ggaaaatact ttgtttaaat ggatttaaat aaaactacga       540
     tcttttcagc tttgagctgc gccaaactaa cgctgctgcg agattttttc ctgcccttac       600
     a                                                                       601
//
ID   BEL-28_CQ-I repbase;    DNA;    INV; 1690 BP.
XX
AC   AAWU01010753;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_CQ_;
KW   BEL-28_CQ-LTR; BEL-28_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1690
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 209-209 (2011).
XX
DR   GenBank; AAWU01010753; Positions   28449   30138.
XX
CC   'GCAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..1688
FT                 /product="BEL-28_CQ-I_1p"
FT                 /translation="MDKLEHLRKVCLVRVSGELVAAGKLAVRKASFSEATE
FT                 RLERLRELAGKFRRMQQSIEETLEDQEEVAAAHGKSVEFFTAYQAAEELLE
FT                 VHIKNTTPVRAVTRKSSSGSLLDEIRQFCEKVTAATVGQFGTIPSYPNGSA
FT                 QVSSCAPHSGPTTTSDGQSGAVGYGNPDGKQRLDCASVTDPTTVSSREEGE
FT                 PMSNWSPLPEKHHSSIRVSTFHPGQATCDGGKDGPETPMEGVEKASVEKAT
FT                 TQETNKPEEVDGAAINMAVTQETRRVKWKALMPTEAISVRGIDVALPQASL
FT                 DSKTCAELCPFHGIEEEQLPAIGMSTISPVRLSCNGGKGGPETSATGVEMA
FT                 LAGGEASQNQVVRPAAEQVEEVIINVVEAQDPRGAQRKAHLLPTEPVSCRG
FT                 IDLALPRASLDSRFCVWIGLPSIQSINTSSVRAVGPDVKIQKAKHNINDER
FT                 FMEMEGDQALVDTDSTESTRRFEDVGGYVTRSRFRDATFSFKQLWIRGHIR
FT                 HLLKVERIGNWTHHQTASAGEGKGLRLKIKHTTEKIVAAGGVGLRQMCLKA
FT                 GE"
XX
SQ   Sequence 1690 BP; 433 A; 426 C; 530 G; 301 T; 0 other;
     ttggtccttc gtcgccggat gggtttcgcg aaccggtcag catggacaag ctggaacacc        60
     ttcgaaaggt gtgcttggtc cgcgtgagtg gggagctggt ggcagccggg aaactcgctg       120
     tacggaaggc gtccttcagc gaggcaacgg aacggctcga acggctccgg gagcttgctg       180
     ggaagttccg gcggatgcag cagagcatcg aggaaacgtt agaggaccag gaagaagtcg       240
     ccgcagcgca cggaaaatct gtggagtttt ttacggctta tcaagcggcc gaggaactgc       300
     tcgaagttca catcaaaaac acaaccccgg ttcgagcagt tacccggaaa tcgagcagcg       360
     gcagtctgct agacgagatc cggcagtttt gcgagaaggt aaccgcagcg acagtcggcc       420
     agttcggaac cattccaagt tatccgaatg gcagcgctca ggtttcgagt tgcgcacccc       480
     actcgggtcc aacgacaaca agcgacggcc agtctggagc cgtgggatac ggcaatccag       540
     atggcaaaca gcggttagat tgtgcgtccg ttacggaccc aacgactgtt tcgtcgcggg       600
     aagaaggtga accgatgtcg aattggtccc cgcttccgga gaaacatcac tcgtccatca       660
     gggtgtcgac tttccaccct ggtcaagcga cgtgtgatgg cggtaaagat ggtccggaga       720
     cgcccatgga gggcgtagag aaggcatcgg tggaaaaggc aacaacgcaa gaaaccaaca       780
     aaccggaaga agtggatgga gctgccatca acatggcggt gacccaggaa acgaggcgag       840
     taaagtggaa ggctcttatg ccaactgaag ctatcagtgt tcggggaatc gacgtggctc       900
     ttccccaagc atcactggac tccaagacct gtgccgagct ctgtccattt cacggaatcg       960
     aggaggaaca acttccggcg atcgggatgt cgaccatcag ccccgttcgg ctgagttgta      1020
     atggaggtaa gggtggtccg gagacgtccg caacgggcgt agagatggca ctcgcaggcg      1080
     gcgaagcatc acaaaatcag gtagtgcgcc cagctgcaga acaagtggag gaggtaatca      1140
     tcaacgtggt ggaggcgcag gatccacgag gagcacagcg gaaggcgcac ttactgccga      1200
     ctgaaccggt cagttgtcgg ggaatcgact tagcacttcc tcgagcatcg ctggactcca      1260
     gattctgtgt ctggattggt ctgccaagca tccaatctat caacacatcc agcgtccgcg      1320
     cagttggacc ggatgtcaag atccagaaag caaagcacaa catcaacgac gagagattca      1380
     tggaaatgga gggagatcaa gcactggtcg acactgattc gactgaatcg acgagaaggt      1440
     ttgaggacgt tggaggttac gtcacacggt cacgcttcag ggacgccacg ttctcgttca      1500
     agcaactgtg gattcgtggc cacatccggc acctactcaa ggtcgagcgg atcggaaact      1560
     ggacacatca tcaaacggcg agcgctggcg aaggcaaagg attgcggctc aagatcaaac      1620
     acaccacgga gaagatcgta gcagctggcg gagttggttt gaggcagatg tgcctcaagg      1680
     cgggggagaa                                                             1690
//
ID   BEL-28_CQ-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   AAWU01010753;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_CQ_;
KW   BEL-28_CQ-I; BEL-28_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-216
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 210-210 (2011).
XX
DR   GenBank; AAWU01010753; Positions   28233   28448.
XX
SQ   Sequence 216 BP; 49 A; 58 C; 48 G; 61 T; 0 other;
     tgttcgggtg ctttagagca actctcccat ctggcgattt ggcaaccctg ctcatctgac        60
     agttcgcgcg caggagacaa acctcgtgca ttcttattca tctatcaaac gcaacggacg       120
     caaataaagg agtagtttag tttagtttgt aaacgtggtc ttttcatttc ctccgggatc       180
     tctcgcgttc cgtcggccca gtccaaggtc caaaca                                 216
//
ID   BEL-28_DTa-I repbase;    DNA;    INV; 6217 BP.
XX
AC   .
XX
DT   18-JUL-2021 (Rel. 26.10, Created)
DT   18-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6217
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~98% identity to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1605..3089,3052..4086,4064..5290,5191..5649)
FT                 /product="BEL-28_DTa-I_1p"
FT                 /translation="KQPTLSHSTLSDQNCRHCQGSHHIRQCMQFQKLKPQD
FT                 RFQFVKAAKVCINCLAYNHTTKDCKSKKTCNEHDSQEITASHASQNQQVIL
FT                 PTAMLYVNYKGDNFRMRALIDQGSQRSFITEKAKNRLSLPFRKIHTNISGI
FT                 GGQYVSSSSKICSFKLTNASCQHSIQTEAIVLKKLTIILPSISDQKPSDSI
FT                 LNQLELAHPNFSTAADIDLVLGSDVTPQIFLEGIQTALNGHLLAQFTIFGW
FT                 IISGPLSNSHHTCSFSTIVEDSGPEIGTMLQKLWEVEEIYVPKLVSEADEF
FT                 CEQYFADTTQRLSDGRYMVRLPFKSEFPESETLGPSRTTAMGQYVRLHKSL
FT                 SKDSDLRKQYDNVLQEYVDLGHMTEAEPFEVIIKNKYFSFYLPHHAVVRPE
FT                 SKTTKLRVVFKASRRTTTQFSLNDVLHKGPSLQSDLLGILLNWRLYKYVFN
FT                 GDIEKMYRQILVHPDDRQYQRLLFRPQSSSIIKDFELKTVTFGVNCAPGLR
FT                 QSPSVLTAHQDCKESHPMASKIILQETYVDDILAGDHSIERAEVAQSQPRD
FT                 ALKSAGFLLKKNTANHKQLLQNIPRADLLDGDFLKVAEASTTNTLGIKWNA
FT                 SKDVFQYNIRAPTPCKTITKRQILSHAATLFDPAGWLTPIVIQAKMLLQSL
FT                 WKEGQDWDECVSPNTLTTWNKFIAALPELKLLTIPRWVGYSPTQEVQIHGF
FT                 SDASEKAYCAAIYVRTVTSNSIQSHLLVAKTKVAPLKTISLPRLELCGAHL
FT                 LARLTAHVLKTTQLPSENIYLWSDSTIVLAWFEKPSTAWKTFVANRTAIIK
FT                 SKAPNAQWNHVQFKDNLADLGTRGCIPKELKATHSFGRKLLTLSEDKWPKG
FT                 DMPSKTPPEEKHVNLFFTQSNDYDICEQYTSYSRALRATARVLSWHPAHSN
FT                 CDSTMASRVKLAKVRLIIAAQRFFYPKEYSQLLNKIPLSTKSSLCPLNPFL
FT                 DSEGQVRANGRLANANIPYKERYPILLPTKSRLNSLFIEFIHRTLLHAGNQ
FT                 LMMRAIRQEFFIPKLAMLVKKCIHQCVVCTRFRKNAQQQIMAALPPERTQL
FT                 TRAFAITGVDFAGPFNLKASLLRTNRLVKGYVCIFVCFSTKAVHLESVSEL
FT                 SSKAFLQTFERFVSRRGTPKKVFSDNGKNFVGASKELAKNFHAFMQSASAH
FT                 IATQYSSHEIEWHFIPPRAPHMGGLWEAAVKSFKKHFTRVVGNRMFTLEEF
FT                 ATILAKIEAVLNSRPLWIPKSNPQDLLPLTPGHFLTGAPNRGSFKLKTPMD
FT                 PQIQPTRPATTNPGTFLNWSPLMALPENPNESLSIQNRWQKQKVMYQEFCN
FT                 RWRHEYLHELHRRYKWKHPAENINLDDIVIIRVDNCPPTEWRLGRVIKLHP
FT                 GGDQNTRVVDLQTRSGPLTRPIVKLVLLPKKETPSLQDQ"
XX
SQ   Sequence 6217 BP; 2073 A; 1581 C; 1089 G; 1474 T; 0 other;
     tggtccttcg acgagaaaaa gcaaccagcc ggtggagctt tcatcaccca aactggaaaa        60
     atgtaaaaat cgcaatttta ccagacactc atgtcaccca ttcatacaaa aattaaccta       120
     taaaacacac atacgaaatt ttgcaacacg tgcaagaagt tttcagccat aaaaacacac       180
     acacatacat ccatacataa aatgtaacct actcacgaaa ataaattaaa cacgtgaatt       240
     taagtgaaat taaaactaaa attctagccg tacatattac gcacacatcc atacattata       300
     aattttcgca acacgtgcag aaaagtttca gccgtgagca cacacacatc cagccgtgaa       360
     cacacacata catccataca taaaaaatta acgtactcgc gaaataaatt aaacacgtga       420
     atttaagtga aattaaaact aaaattctag ccgtacatat tacgcacaca tccatacatt       480
     cttaattttc gcaacacgtg caggacaagt tttcagccgt aaaaaacaca tacatccata       540
     cacaaaaaat taacctactt gcacaaacaa attaaatatt ggtaacacgt gaatttaagt       600
     ggaattaaac ctaaattcta gccgtacata ctacgcacac atacatacat tataattttt       660
     cgcaacacgt gcctgaaaaa gttttcagcc gtcaacacac acacatccaa ataaaattta       720
     taaacattta caacacgaag aaatttcaag caactttaac acttatccca catatattta       780
     cacaacaatt taaaataacc acatttactt taaaccaaat aaaatttata aacatttaca       840
     acacgtttaa gaacttctca tacattttaa tatacgaaaa ttatcccagt ctacaaatac       900
     tcacatattc ttcctaaatc acgaagtaac accacaacag ggttaattca cctcttccaa       960
     ctgaattccg acagaatatt catatatttc catccggaaa tagacaggct cgattgccat      1020
     tttttttttt taattcgtcc cacgaatacc taagtctccg aatcagtgac ctcggaacgc      1080
     ctagctcgat tagacgcaat gttcaacgag gtcgaccgag attttcgaaa tgctatgacc      1140
     tcaggagaag aaaactgtga tcaatccgac gcattcgata catttaataa atgcgaagat      1200
     gaaatggttc gagtcaaagc acatcttaaa gatttactcg cagtaaacag gtccttttta      1260
     gactcatcgg gtctgacaaa ctcaaccaac ctttttgacg actcaagtca cataatggca      1320
     aggaaattca aaaaatccaa accactatca caagttgtct cgcagtactg aaagctcaag      1380
     gtgtaccgaa cgataattgg gatccattta tagtctttca ttgctcgtcc aggttaccac      1440
     agctgactct gtcgttgtgg gaacaatctc ttgaaaaaag aaaagagtta ccaacctggc      1500
     agcaactgac aactttcctc acatcccgtg tagaagtatt agaacgacta gcagcgatca      1560
     ccccagtaaa accctttgtc cctaacaaca caaaattccc gtagaagcag ccaacactgt      1620
     ctcattcaac gttatccgac cagaactgca ggcattgtca aggttcccat cacatacgac      1680
     agtgcatgca atttcaaaaa cttaaacctc aagatcgttt ccaatttgtc aaagcagcaa      1740
     aagtttgcat aaattgcttg gcatacaatc acacgacgaa agactgcaaa agtaaaaaga      1800
     catgcaatga gcacgattct caagaaataa cagcaagcca cgcatctcaa aaccagcagg      1860
     taattcttcc cactgcaatg ttgtacgtaa actataaagg cgacaatttt cgaatgcgtg      1920
     ccttaataga tcaaggttcg caacgatcct ttatcactga aaaggctaaa aatcgcctaa      1980
     gcttaccctt ccgaaaaatc cataccaaca tatctggcat aggaggccaa tatgtaagct      2040
     catcctccaa aatatgcagc ttcaaactca ctaatgcctc ttgtcaacac tcaatccaga      2100
     cggaagcaat agttcttaaa aagttgacaa ttatcctacc ttcaatatca gaccagaagc      2160
     caagcgactc gattttaaat caactcgagc tagcccatcc caatttttca acagccgcag      2220
     atatagacct tgtattaggc agcgacgtca cccctcagat ctttttagaa ggcattcaaa      2280
     ctgcgcttaa tggccacctt ctcgctcagt ttaccatctt tggatggata atcagtggtc      2340
     cgttatccaa cagccatcat acgtgctcat tctcaacaat agtggaagac tcaggaccag      2400
     aaatcggcac aatgctgcag aaactgtggg aagttgagga aatatatgta cctaagttag      2460
     tttctgaagc tgatgaattc tgcgaacaat acttcgcaga cacaacgcaa aggctttcag      2520
     atggacgata tatggttcga ctcccgttca aatccgaatt tcccgaaagc gagacactgg      2580
     gtccgtccag aaccactgcc atgggtcaat atgttcgctt gcacaaatcc ttgagtaaag      2640
     acagcgacct acgaaaacaa tacgacaatg ttctgcaaga atacgtcgac ctgggccaca      2700
     tgacagaggc cgaacctttc gaagtcatca ttaaaaacaa atatttctcc ttctatctgc      2760
     ctcatcacgc ggtcgttcga cctgaaagca aaacgaccaa acttcgtgta gtctttaaag      2820
     cgtctcgtcg cacgaccaca caattctctc taaacgatgt acttcacaaa gggccttcac      2880
     tccagagcga tttgttggga atccttctca actggagact gtacaaatac gtcttcaatg      2940
     gtgatattga gaaaatgtat cgccaaatcc tagtccatcc ggacgatcgc cagtaccaac      3000
     gacttctttt ccgaccacaa tcaagttcaa ttataaaaga ctttgagcta aagacagtca      3060
     ccttcggtgt taactgcgca ccaggactgt aaagaaagcc atcccatggc cagtaaaata      3120
     attcttcagg aaacctatgt cgatgacatt ttagccggag atcactctat agaaagagca      3180
     gaggtcgctc aatcccaacc ccgtgatgct ctcaaatcag caggatttct gctaaaaaag      3240
     aatacggcca atcacaaaca acttttacaa aacattccta gagcagactt gctagacgga      3300
     gattttctga aagttgcaga ggcaagcaca actaatacgc tgggaattaa atggaacgca      3360
     agcaaagatg ttttccaata caacatccgc gcacccactc catgtaagac catcactaag      3420
     agacaaatct tatcccacgc agctactttg ttcgacccgg caggatggct cacgcctatt      3480
     gtaatacagg caaaaatgct tctccaatcc ctttggaaag aagggcaaga ttgggacgaa      3540
     tgcgttagtc caaacacact gaccacatgg aacaaattca tagccgcatt acctgaacta      3600
     aagcttctca caatacccag gtgggtaggg tacagtccaa cccaagaggt ccaaatacac      3660
     ggcttttcgg acgcgtctga aaaggcatat tgtgcggcga tatatgtccg taccgttacg      3720
     tcaaattcca tacaatctca tctgctagtc gcaaaaacca aagtagcacc attaaaaaca      3780
     atcagcctcc ctaggttaga actctgcggc gcccatcttc ttgctaggct tacagcgcat      3840
     gtgttaaaga caactcagct accaagcgaa aacatatatc tttggtccga ctctactatc      3900
     gtgctagctt ggtttgaaaa gccatccacg gcttggaaaa cctttgtagc taaccgcaca      3960
     gctatcatca aatctaaagc tcccaatgct caatggaacc acgtccaatt caaagataac      4020
     cttgcggatc tgggcacacg tggatgtatt ccaaaagagt taaaagctac tcactctttc      4080
     ggaagataaa tggccaaaag gtgacatgcc ctcaaagact cctccagagg aaaaacatgt      4140
     caaccttttc ttcactcaat ccaatgacta tgacatttgt gaacaatata cgtcatactc      4200
     aagggcctta agagcaacag ctcgcgtact aagttggcac ccagcacact caaactgcga      4260
     tagtacaatg gcctcccgag taaagcttgc caaagttaga ttaataatag ctgcccaacg      4320
     gttcttttat cccaaagagt actcccagtt actcaacaaa ataccgttgt cgacaaaaag      4380
     cagcctgtgc ccactaaatc cctttttaga ctctgaagga caggttcgcg ctaacggtcg      4440
     attggcaaat gctaacatcc cctacaaaga acggtatccc atactgttac caactaaatc      4500
     tcgacttaat tcgcttttta tagaattcat acaccgtaca cttcttcacg ccgggaatca      4560
     attaatgatg cgagcaatca gacaagagtt cttcattcca aaactagcca tgctcgtcaa      4620
     aaagtgcatc caccaatgcg tcgtatgtac acgctttagg aagaatgcac aacagcaaat      4680
     aatggcggct cttccacccg aaagaacgca gctcacccgt gcgtttgcaa tcacaggcgt      4740
     agactttgcg ggtcccttta acctaaaggc ctctctacta aggactaatc gactagtcaa      4800
     agggtacgtc tgcatattcg tatgcttctc gaccaaagca gtccacttag aatcggtctc      4860
     tgaactcagc tccaaggcgt ttctgcaaac ctttgagcgc tttgtcagcc gtcgaggaac      4920
     accgaagaaa gtgttttccg ataacggaaa aaacttcgta ggcgctagta aagaacttgc      4980
     aaagaacttc cacgctttta tgcaatccgc aagtgcacat atcgccacgc aatacagtag      5040
     ccatgaaata gaatggcatt ttataccccc tcgtgcccca catatgggtg gcctatggga      5100
     agctgctgta aaaagtttta aaaaacactt tactcgagta gtaggcaatc gcatgttcac      5160
     cctagaagaa tttgccacta ttcttgctaa aatagaggca gttttaaact caagacccct      5220
     atggatcccc aaatccaacc cacaagacct gctaccacta accccgggac atttcttaac      5280
     tggagccccc taatggccct tccagaaaac ccaaacgaaa gcttgtccat ccaaaatcgt      5340
     tggcagaagc aaaaggtcat gtatcaagag ttttgcaacc gatggcgaca tgaatatcta      5400
     catgaactcc atcgtaggta taaatggaag caccctgctg aaaacattaa cctagacgat      5460
     attgttatca tcagagtgga caactgccct ccaactgagt ggagactcgg cagagtcatc      5520
     aagctacacc ctggtggcga tcaaaacact cgagtggttg atctacaaac aagatcaggc      5580
     ccactaaccc gaccaattgt aaaactagtt cttcttccca aaaaagagac cccttctcta      5640
     caagatcaat aagactacta agctcacgac ccgttagaac cccccccacc agttcatcaa      5700
     caccggataa tgaagcatca ctaataaaag tttatctctc caatagatgg tgcacaaatg      5760
     ccgaatgtgc cacaaagggc acccacttcg cttctgcgcg aagttgctta aactggattc      5820
     cttagaacga cgacaggcgg ctcgacgaat gggatactac gccaactgcc tggcatccac      5880
     acataggctg cacgaatgca agtcaaagga agtgtgccat cgatgtggag atttgcacca      5940
     caccctctta cacgctgtcc acaacggagg acgttccata tcaccaagca acaagcagaa      6000
     gtctaaggtt gtggctaaaa gcaccacacc caagcggaaa gtcgaggaaa gaagaagccg      6060
     ttcaacgaca cgtcgtgctt ccagcgacta ccaaacgcgg caatataaga caccatctcg      6120
     ccctttgctg catctgcaag aggcaatccg aaatctcacc aagctgaagg aaattttgga      6180
     ctaagctcgg atccttgcct ggcaaaaggg ggcggca                               6217
//
ID   BEL-28_DTa-LTR repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   18-JUL-2021 (Rel. 26.10, Created)
DT   18-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-346
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, ~98% identical to the other flanking LTR.
XX
SQ   Sequence 346 BP; 115 A; 73 C; 59 G; 99 T; 0 other;
     tgttagcgaa cgctaacttc agaatctcat tagtaatatc atgttctcat taaataattc        60
     tgcattgtaa attccacgtt tcattagtaa aatcatgttc acaagaacta attctgcatt       120
     gtaaatacca catttatcag taatagaatg ttcacactaa cgaaataatg taaaactgcg       180
     tattgagcca aaaggccgac gtttttgtaa gatcgctata cggtaatacc aaccggtggc       240
     agcggccgtt gcaaataaaa ccagtgaata gagaagtctt gtgcgtcgtt tttcttaact       300
     ttcgcccaaa ccacccagca acacagattc ggacggaatc tgcaca                      346
//
ID   BEL-28_SiCu-I repbase;    DNA;    INV; 5601 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5601
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5002-5002 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..5519
FT                 /product="BEL-28_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MDVKIKTADFKRKAIKVEMKTIEDELKKQTPSPVTVE
FT                 DQMAIILGLAEPLFKSVEDVIEGYLEDGDEQNYLEQMARLQKYKRELTTLR
FT                 RKVGTYLHTVYPPPPPPQNPTVNTVADLRKVSLPQMKLPEFSGNVREWLGF
FT                 WAAFSVIDNNTGITDAEKFQYLLQCLKPASDARRLISSFPVCDSTYPAAVD
FT                 MLKKQYGRNSTLVKVYVLDLLQLVIHNANQKNKVDVMDLVPQISSQIRNLS
FT                 QLGVTSDKCEQILYPVLESCLPEDLLQAWQRNNNFEEKIDPLMTFLNEEVA
FT                 NKMDRTLAKMNFGVPAPPAAAPSKGKGNKARAQGDDIPAAAAFMAVQGADK
FT                 GKGKSSKKCAFCDKNHDSHDCGKAKIEMTPEQRQEVVKEKNLCLICLKPGH
FT                 LAGKCRSFVRCSICTGKHYEMLCMGKRKEVQQQPAPGPMMMTTAPPQTSIP
FT                 CFYNLDGKTYFGNPPVVQQQAPVQALPPQQQRQAPVQPQQSSSGNPSFLVN
FT                 SSLQKPKEEIQMSNFAGGTQVAMYTMLVTLEGPSSRYTVRAFVDEGSDSSF
FT                 ILEELAQKLNCQTIGSKLLQHQVFGGKITEPVRRPVIKATLRNPFTGVAAE
FT                 FNFNSVPAIAQRIRKPQPGDWVEELARSRIPMQHQHDATDDVHILIGMDIA
FT                 VQILTGGFHRLNSHFIARETILGWFVGGIQPVPPDSIQVTQTHMVTTMMVE
FT                 DLKPEDMWNLEILGIVDDPQAQSKKDLEDAALQHFERTVKRLPNGRYELEL
FT                 PWIEGHRHIKCNKSQALAQLHRITKDLKEQGHLQNYSKIFENWLADGIIEE
FT                 VPQESNVDTGYYMPHKHVIKESSSTTPLRPVFNASAKAKGSVSLNECLEKG
FT                 PNFLEEIPGLNLRFRLHRVGSSSDISKAFLQMSVAEKHRDFLRFLWWSDKE
FT                 GKEVRVFRHQRVVFGVSPSPFMLAATLKYHIKNEGSSNPVLAQKLLESLYV
FT                 DNSVTSHSTTEEALEFQQFSQSLLLPAKFDLRGWEYSNSKEEKIVPVLGMD
FT                 WNTKXDTLQLHLDSVKKKLLGPMTKRGLLSMVNSVFDPMGFACPFTLTSKL
FT                 LYQECCVRNLGFDDPLPADIAKRLDTWKRQVPELEKLKITRWASNSDDYSN
FT                 MSIHTFCDGSKLAFATCVYLRSESGGSVEVQLLYAKSRVAPTKKKLTIPRM
FT                 ELMGCLIGVRLTTTVMTALGLKNIPVYFWTDSTTALAWIQNDKPWGRFVFN
FT                 RVEEIRKNSTRNQWRHVPGDLNPADLPSRGCTAEKLVDLNWHEGPEWLHHK
FT                 EEFWPQSNPTPDQEAVMEEMKKAVVSAAVITREADLDFRLERISDFHKILR
FT                 VVATAQRYIRKLQARAAARKSGKNLPKPRRSRKKIEQLTVEEIEQAEVAVL
FT                 KLIQKSAFNGADDKRLHGMSSFVDKNGLIRIKSQLLFGHDDYNVRCPVVLP
FT                 DDHALVKQLIRKEHEINSHAGVQTLQALLRNKFWILRSRRVISNLIRTCVL
FT                 CRRFLAKKCETPGVPLPFDRIRNTVCFDVTGVDLAGPLFLRGGDRVWIVLF
FT                 TDAVYRGVHLELTTTLSTEGFIRAFRRFVARRGRPSVVYSDNGLNFVGCNN
FT                 LFRHLDWDQVQRYAAVERIQWKFNPPTAAWWGGWWERLVGLMKTLLRRILG
FT                 KQIVHYDELQTIICDVESTLNHRPLTFVSDAAGELMPICPAYHMKDNPHSE
FT                 LPEADAVDAKSLKRSAKKSQELRTELRSRFRKEYLAMLRNCAGGKGTPIKP
FT                 RDVVLIGSDNSKRIDWPLGIVEEVYTGRDKQSIRSALVKTKDGKFLRDVKR
FT                 LYLLEMSQEDPEKEQTEGKEDLPXGSQDAP"
XX
SQ   Sequence 5601 BP; 1655 A; 1339 C; 1347 G; 1254 T; 6 other;
     tttctggcga tccgctgcca ggatagtatt caatattcat cagtgccgtt gtgacttctc        60
     cagtcaaccc cttcaactct actcatcatt ctcctgggct cctttgaaga ttcaaaatgg       120
     acgtgaaaat caagacagca gacttcaaaa ggaaggcaat caaggtggaa atgaagacga       180
     ttgaagatga actgaagaag caaactccaa gtcccgtcac ggtcgaagat caaatggcaa       240
     tcatcttagg attagcagag ccattgttca aatcagtaga agacgtgatt gagggttatc       300
     ttgaagatgg agatgaacag aactatttgg aacaaatggc gcgcctccag aagtacaaac       360
     gagagctgac cactttaagg agaaaagtcg gcacgtactt acacaccgtg tacccaccac       420
     caccacctcc gcaaaaccca accgttaaca cagttgctga cttacggaaa gtcagcctcc       480
     cgcaaatgaa gttaccggag ttcagtggaa atgttcgaga gtggctggga ttctgggcgg       540
     cgtttagtgt cattgacaac aatactggaa ttactgacgc agaaaagttc cagtacctgc       600
     tacagtgcct gaagccagca tctgacgcca ggaggctcat aagttccttc cctgtttgtg       660
     acagtaccta cccagcagcc gtggacatgc tcaagaagca gtacggaagg aacagcacgc       720
     tggtcaaagt ttacgttttg gacctactac agctagtgat ccacaacgct aatcagaaga       780
     acaaagtgga tgtgatggat ctagtaccac agatttcatc ccaaatccga aacctaagtc       840
     aactgggagt cacatcagac aagtgtgaac agatcctgta cccagttctc gaatcctgct       900
     tacctgaaga tctactccaa gcatggcaac gcaacaacaa ttttgaagag aaaattgatc       960
     cgctcatgac atttctcaac gaagaggttg ccaacaaaat ggacagaacg ctagcaaaaa      1020
     tgaactttgg agtcccagca ccccctgcag ctgcaccatc aaaagggaaa ggaaataaag      1080
     ctcgtgcaca aggtgacgac attccagcag cggcagcgtt catggcagtt caaggagcag      1140
     acaaaggcaa ggggaaatca agcaaaaagt gcgcattctg cgacaaaaat cacgatagcc      1200
     atgactgtgg gaaagccaag attgagatga cgccggagca gcgacaggaa gtagtaaagg      1260
     agaagaacct ttgccttatc tgtctgaaac ctggtcactt ggcaggaaaa tgtcgttcgt      1320
     tcgtgcgttg ttccatttgc actggaaaac actatgagat gctctgcatg gggaaacgga      1380
     aggaagtcca acaacaacca gctccaggtc ccatgatgat gacaacagca ccaccgcaga      1440
     catccattcc gtgtttctac aacctcgacg gcaagacata cttcggaaat cctcccgtag      1500
     tccagcagca agcacctgta caagcgctac caccacagca gcagcggcaa gcacctgttc      1560
     aaccgcagca gtcctcctct gggaatccgt catttttggt caactcatct ctccagaaac      1620
     caaaggaaga aatccagatg tccaatttcg caggaggtac acaggtagcc atgtacacca      1680
     tgttagtcac gctggagggt ccaagttcga gatacacagt acgtgcattc gtggatgaag      1740
     gctcagattc ctcattcatc ttggaggaac tagctcaaaa attgaactgc caaacgatcg      1800
     gatcaaaact cctgcagcac caagtgtttg gtggaaaaat aacggagccc gttcgtagac      1860
     cagttatcaa agcaacatta aggaacccgt tcactggggt cgcagcagaa ttcaacttta      1920
     attccgttcc tgcaattgca caacgaataa ggaagccgca acctggggac tgggtagaag      1980
     agttggcgcg aagcagaatt ccaatgcagc accaacacga cgccacagac gacgttcaca      2040
     ttctgattgg tatggacatc gctgtgcaaa ttttaacggg aggctttcac cggctcaaca      2100
     gccacttcat cgccagagaa acgatcctgg gatggtttgt tggaggaata cagccagtgc      2160
     cgcccgactc aattcaagtt acgcagactc acatggtaac tacgatgatg gtggaggatc      2220
     taaagccaga agacatgtgg aatctggaga ttttgggaat tgtagacgac ccccaagccc      2280
     aatcaaaaaa ggatctggaa gatgcagcgc ttcaacattt tgaacgcaca gtaaaacggc      2340
     ttccgaacgg tcgttatgaa ttggagcttc cgtggattga ggggcatcgt cacataaaat      2400
     gcaacaaatc tcaggcttta gcccaactac accgcatcac aaaggatttg aaggaacaag      2460
     gacaccttca aaactacagc aagatttttg aaaactggtt agctgacggg attattgaag      2520
     aagtgcctca agaatcaaat gtggataccg gctactacat gccacacaaa cacgttatca      2580
     aggagagcag cagcaccacc ccactccgcc cagttttcaa cgcctccgca aaggcaaaag      2640
     gatccgtttc actgaacgag tgcctagaga aaggaccaaa ttttctggaa gagattcctg      2700
     gactgaatct gagatttcga cttcatcgag taggatcaag ctcagacatt tcaaaggcgt      2760
     ttctccagat gtcagtggcg gaaaaacaca gagattttct tcgatttttg tggtggagcg      2820
     acaaggaagg caaagaagtt cgagtttttc gtcatcagag agtggttttt ggcgtcagtc      2880
     ccagtccctt catgctggcc gctacactaa agtaccacat caagaatgaa ggctcctcaa      2940
     atcctgtcct cgctcaaaaa ctcctggaat ctctatatgt tgacaacagc gtgaccagtc      3000
     attcaacaac agaagaagct ctggaattcc agcaattttc tcaaagcctc ctactaccag      3060
     ccaagtttga cctcagaggg tgggagtata gcaacagtaa agaagagaaa attgtaccag      3120
     tgctaggaat ggactggaac accaagtwtg atacgctcca gcttcacctg gattccgtaa      3180
     agaagaaact tttaggacca atgaccaagc gtggactctt gtcaatggtc aattcagtct      3240
     ttgatcccat gggatttgct tgtcccttca cgcttacttc aaaacttctg taccaggaat      3300
     gctgcgtaag aaatctcgga tttgatgacc cacttcccgc agacattgcc aaacgtcttg      3360
     atacatggaa gcgtcaggta ccagaactgg agaagctgaa gataacgaga tgggcctcca      3420
     acagtgatga ctacagcaac atgtcaattc acacattctg tgacgggagc aagctggcat      3480
     tcgcsacttg tgtttaccta cgaagtgaat ccggaggaag tgtggaggtc cagttgctgt      3540
     acgccaaatc tcgtgttgcc ccaacaaaaa agaagttgac gattccaagg atggagctga      3600
     tgggctgcct cataggagta cgtcttacta ctacagtaat gacagcgctg ggcctgaaga      3660
     atatcccggt ctatttttgg acggactcta caacagccct cgcctggatt caaaatgaca      3720
     agccgtgggg acggtttgta ttcaacagag tggaggagat tcggaagaac tccacacgaa      3780
     accaatggcg ccatgtccct ggcgacctca atcctgctga tctcccctct cgtggatgta      3840
     ctgccgagaa actagtggac ctaaattggc atgaaggacc tgagtggctg catcataaag      3900
     aagaattttg gccgcagtca aatccaactc cggaccaaga agccgttatg gaagaaatga      3960
     agaaagccgt tgtttctgca gcagtcatta ccagagaggc tgacttggac ttccgtcttg      4020
     agcgaatatc tgatttccac aagatacttc gtgtcgttgc cacagcccag cgatacataa      4080
     ggaagcttca agcacgagcc gcagcacgga aatcaggaaa aaatttacct aaaccccgga      4140
     gaagcagaaa gaagatagag caactcactg tggaggagat cgagcaggcg gaagtagcgg      4200
     tcctgaagct aattcagaag tcagcattca acggagccga tgataagcga ctgcacggaa      4260
     tgagttcctt cgtggacaaa aacgggctca ttcgcatcaa aagccagtta ctattcggcc      4320
     atgatgacta caacgtccgc tgccctgtcg ttcttcctga tgaccacgca ctggtgaagc      4380
     agcttatccg gaaggaacat gaaattaact cccacgccgg agtacaaaca ctccaagcac      4440
     tactgcgcaa taaattttgg attttgcgta gccgmcgtgt tataagtaac ctcattcgta      4500
     cctgcgtcct gtgtcgccgt ttcctggcaa agaagtgtga aacgcctgga gttccattac      4560
     catttgaccg aatcagaaac acngtttgtt ttgatgtcac cggtgtggat cttgctgggc      4620
     ctctcttcct tcgtggcggt gatcgcgtct ggattgttct tttcactgac gctgtgtaca      4680
     gaggtgtaca tttggagttg accacaacct tatcgacgga gggattcatc cgtgcctttc      4740
     gacgctttgt ggccagaaga ggtagaccat cagtcgtcta ctcagacaac ggattgaact      4800
     ttgtgggctg caacaacttg ttccggcatc tcgattggga ccaggttcaa cggtacgcag      4860
     ctgtggaaag gattcaatgg aagttcaatc cccccactgc agcttggtgg ggcggatggt      4920
     gggagcgact agttgggctc atgaagacgc tgcttcgacg cattcttggc aagcagatcg      4980
     tgcactatga cgagctacaa acaatcatct gtgatgtcga atccactctc aaccaccgcc      5040
     ctcttacctt tgtttccgac gctgctgggg agctgatgcc aatctgtcca gcctaccaca      5100
     tgaaggataa tcctcactcc gagttaccag aagcagacgc mgtggatgca aaaagcctca      5160
     agagaagtgc caagaaaagt caagagctac gtactgaact tcgctcacgt ttccggaagg      5220
     agtacttggc catgctcagg aattgtgctg gaggaaaagg aaccccaatc aagccccgtg      5280
     acgtcgttct cattggcagc gacaacagca agaggatcga ttggccgttg ggaatcgtgg      5340
     aggaagtcta cactggacgt gataagcaga gtatccggtc tgcccttgtc aaaacaaagg      5400
     atggaaaatt cctgcgggat gtcaaacggc tttatctgct cgagatgtct caagaggacc      5460
     cagaaaagga gcaaactgaa ggaaaggagg acttaccaag wggatctcag gatgccccat      5520
     gaaattaata ttttgtatat tatgtagttt agaattttaa tttaaaatat tgtatttaaa      5580
     attaaaattg gtgggagaat a                                                5601
//
ID   BEL-28_SiCu-LTR repbase;    DNA;    INV; 589 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-589
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5025-5025 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 589 BP; 181 A; 111 C; 99 G; 198 T; 0 other;
     tgtcccgagc gtacataata tatattctca tgtaacccca aatatgtgcg gggataaact        60
     ttaatgtgac ggtgtgctcg ctgcaatcag aaatgtttcg tttgttccag agctttcaga       120
     aatgcgagct caagcaactt tcagttttca tttttgtact ggtcaatttt tgggaatgca       180
     acttccttgc atcaccgacc aatttctctt cactattcac cttttgccga caagactgac       240
     ttgcagcaga gcgaagcaaa gtgaattttc tgttaaaaca attagctaaa aatatagtaa       300
     tagggaacaa ttattgtaaa tttcgaggaa ataaattgtt ttacgtttta ctataaattg       360
     atcgcagtta attgtcaatt ttagttattt taaagattag tattttgcgt tttgagtggc       420
     aaattccata agtccagacg agtcggaatc tcatcgcatc atcatcatca tagtagatca       480
     tttcctatta ccagtcactg atcacatttt gaatattatc ctttttcgaa cctaactaaa       540
     gaacttctgt gaaatcgtta aagcagagag cataattctg cccacaaca                   589
//
ID   BEL-28_SpEx-I repbase;    DNA;    INV; 5667 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5667
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6908-6908 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..5664
FT                 /product="BEL-28_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSVEEQKGSKSPRILFDSANSDNFDLRDFNKKRGNLR
FT                 GRITLFIKYVNSLDESLTDQQIVELQLRIANTEQIFCDFQEIQSXIENLVN
FT                 DTELLTQLETRESIESQYYSAVSLAKCICNKNNERIVSTKCTQNTNTAIKL
FT                 PTIXMPSFDGSFENWLEYRDTFISLIHNANEINPIQKYHYLRSSLKGSALQ
FT                 VIKSLEFSSDNYQVAWDLLTNRFDNNRLLINNHVRSLFSLPNITKESPSQI
FT                 RKLVDSVLKNLRSLKALGEPTDYWDTLIIHLITTKLDPITCKEWENRKSFV
FT                 CKDSAKVTFNDLLQFLKDRSDVLDMVQVQGHRHSSESVKRSTISTSQSSQQ
FT                 IRSYVSNKQPTRTSGTSSAKPSRDVKCTMCDGSHALYSCFRFLNLPVQERY
FT                 KFVSAKDVICVNCLRTGHSVESCQFGPCKQCSQKHNSLIHIDNTSCNSLRL
FT                 SDALTHTDVAASGSGTTDSSVCSTASSLFTHSNHSKQAVQSITLEQVLLST
FT                 ALVEVCNNNIYIVARALLDNGSQRCFVTDSLCKKLRLPTIQSTLTITGVGN
FT                 SVLQSEQSCDLTMRSKISKFSIRLNCSVLPKITYCLPNTHIDVHSLQIPQN
FT                 VTLADPDFHVPSDIDLLIGADVFWSLLQDGRMRLSNGPYLQNTHLGWIISG
FT                 ALCPNNRSTNKCSSNTVCCAFSNSLEVQIKRFWELEEVDSAKSANNILTAD
FT                 DKICEDLFISTTTRNSDGRFSVRIPLRESADSLGDSYELAKGRFLSLERKL
FT                 DRLPELKRMYSDFLKEYLLLGHMTPIDTFTTPCYFLPHHCVHREESTTTKL
FT                 RVVFDAGAQTTSGKSLNDLQFIGPPLLNDLVGILLRFRQFSFVACADVEKM
FT                 YRQVLIQPDQRNLQQIVWRENKHSSLSLYQLNTVTYGTASAPYLAMRCLRQ
FT                 LALDCSNEEVSRLILNSFYVDDLIFSHNNKDKLLQLCKDVADVLRTGCFPL
FT                 RKWTFNFDIASSDSFFKSLSLDKSTQCKTLGLGWCNKSDELHFKSDININI
FT                 DVTAITKRKILSIISQVYDPLGLLAPLITTTKILIQKLWLIKIGWDDPVPT
FT                 DIAKSFSKILNSLQHLSEVRIPRHVTTQNANNLQLHIFTDASQEAYGACVY
FT                 VRTICDQSNEVVIKLLCAKSKVAPLKPVSVPRLELCGALVGARLYKKIIDS
FT                 INLQFDVIRFWTDSTIVLGWLRTHPALLKTFVQNRIVEINDLTSGCVWSHV
FT                 QGVNNPADLLSRGVNLLDLVHNNLWWTGPKFIYDTNYKESHLDVKLISLPE
FT                 LKSHIVVSDSSPNIFPFEKFSSFIRMIRSAAYVLRFVHNTRYKTERKHGPL
FT                 IADELRHSTNLLARLSQMDAFPKEYNSLANNSLNIKYSRNLSGLNLFFDKD
FT                 LLIRVGGRLSNSTEFTYDKKHPILLCSKHVFTILLFKYKHKYLCHAGPQLL
FT                 LSSIREEWWPLGGRNLARSVVHECVKCVRLSGKTFSPIMGNLPTERLTPGF
FT                 PFLRTGTDYCGPVYILNRQGRGSRLIKCYICIFICFATRAVHLELVTNLST
FT                 DGYMSCLKRFISRRGKPVEIYSDNGKNYVGAANDLRDFLSKHSNAIIEKVA
FT                 LDNISFKFIPPYSPHFGGLWEAGVRSCKYHLRRVVGNSNLTFEEFYTVLVQ
FT                 VEAVLNSRPLTPLSADANDLQALTPAHFVIGRPLTSPACADISDIPTTRLP
FT                 RYDRIEQMRQHFWERWSKEYISELQTRTKWKVNKSDIVVNRLVLIKEDHLP
FT                 PLKWRLGRIEQVYTGKDGVSRVARIRTANGEVQRSFSKICPLPVAISTACG
FT                 DSAGTQEFPGRG"
XX
SQ   Sequence 5667 BP; 1693 A; 1114 C; 1128 G; 1730 T; 2 other;
     ttggtccttc gagccggatc cctggacttc gtcgaatcat cgagacgttc attacttcta        60
     cgtttgaaaa ttcaaaacgg tcgtcgccgg ttgggtctgc ggccacatta gcattgcctt       120
     ggaaatatac ctgcaggcgg cataaaaggc tacccagaac aaggaggagc gtaagagaat       180
     aacggatacg ttttgatttg tattaatacc gtgttccttg cattgcagtc atcgtgaggt       240
     tgccgtcgtt tggcaactca tcatcgtcgg tgatacctgt aagtaccttc tctttgtttc       300
     tacatagccg ccaaaatgag tgtagaagag caaaaaggct cgaaatcccc tcgtatttta       360
     tttgatagtg ctaacagtga taattttgat ttgcgtgact tcaataaaaa aagaggtaat       420
     ttgcgtggta gaatcactct ctttattaaa tacgttaatt cgttagatga gtcgttaacc       480
     gatcaacaaa ttgtagaatt acagttgcgt atagctaata ctgagcagat tttttgtgat       540
     ttccaagaaa ttcaatccma aatagaaaac ttggtgaacg atacagaatt attgacacaa       600
     ttagagacta gagaatcaat tgaatctcaa tactattcag cagtgtcgtt agcaaaatgt       660
     atctgcaaca aaaataacga gagaatagta tctacgaaat gcacacaaaa taccaatacc       720
     gctataaaac tacccacaat tkcaatgcct tcctttgacg ggtcatttga aaactggcta       780
     gaatatcgtg acacatttat ttctttaatt cataatgcaa acgaaattaa tcctattcag       840
     aaatatcatt atttacgttc ttcgttaaaa ggcagtgcgt tacaggtcat aaaatcgtta       900
     gaatttagtt ccgataatta tcaggtagct tgggatttgt tgactaatag atttgacaac       960
     aatcggttac taattaataa tcacgttcga tcattatttt ctttgcctaa cattacaaaa      1020
     gagtccccta gtcaaataag aaagttagta gattccgttt taaaaaactt aagatcgtta      1080
     aaggcactgg gtgaacccac tgactactgg gatactttaa ttatacattt aataacaaca      1140
     aaattagatc cgattacgtg caaggaatgg gaaaatagaa agagtttcgt ttgtaaagat      1200
     tccgcgaagg tgaccttcaa cgatttgtta cagtttttaa aggatcgatc tgacgtatta      1260
     gatatggtac aagtacaagg tcacaggcac agtagtgaat cagtaaaaag gtccacaatt      1320
     agtacatccc aatcttccca acaaatacgt tcatacgttt caaataaaca accaactcgt      1380
     acatcaggta catcaagtgc taaaccgtcg cgcgatgtca aatgtactat gtgcgatggc      1440
     agtcacgcgt tatactcgtg ctttcgtttt ttaaatctac ccgtacaaga aagatacaaa      1500
     tttgtttctg cgaaggatgt aatatgcgtt aactgtttgc gtactggcca ttcggttgaa      1560
     agttgccaat ttgggccatg taaacagtgc tctcaaaaac acaacagtct aatacacata      1620
     gacaatacaa gttgtaattc ccttcgtttg tccgatgcgc ttacgcacac tgacgtagcc      1680
     gccagcggta gcggtacgac agatagtagt gtgtgttcga cggcatcttc attattcaca      1740
     cattctaatc actcgaaaca agccgtgcag tctatcacat tagaacaggt tttgctttcg      1800
     actgcactcg ttgaagtgtg taataataac atatatatcg ttgcgcgcgc tcttctcgat      1860
     aatggcagtc agcggtgttt tgttacagat tcactttgta aaaaattacg tttaccaact      1920
     atacagtcca ctctcaccat cactggcgta gggaacagtg ttctgcaatc agagcaatct      1980
     tgtgacctaa caatgcgttc gaagattagt aaatttagta tacgtttaaa ttgttccgtt      2040
     ttacctaaga ttacgtattg tttaccgaac acccacattg atgttcattc attacaaatt      2100
     ccgcaaaacg ttacactcgc ggatccagat tttcacgtac cctcagatat cgatctattg      2160
     attggagcgg atgtgttctg gagcttatta caagacggta ggatgcgtct gtccaacgga      2220
     ccttacctac aaaacacaca tttaggttgg attatttcag gcgcgttatg tcctaataat      2280
     cgttccacaa ataaatgttc atctaacacg gtttgttgtg ctttttcaaa ttctttagag      2340
     gttcaaataa aacgtttttg ggaactagag gaagttgata gcgcaaaatc agccaataac      2400
     attcttactg ccgatgacaa aatatgtgaa gatcttttta tttctaccac tacccgaaat      2460
     agtgacggta ggttctctgt gcgaattccg ttacgagaat cagctgattc actcggtgat      2520
     tcatacgagt tagcaaaagg taggttcttg tcgttggaaa gaaaattgga tcgtttaccc      2580
     gaattaaaac gcatgtattc agatttttta aaggaatatt tgttgttggg tcatatgaca      2640
     cccattgata cgtttacaac accgtgttat tttctgccgc atcattgtgt tcaccgcgag      2700
     gaaagcacaa caacaaaact gagagttgta tttgatgcgg gtgcgcaaac aacttcaggt      2760
     aaatcgttaa acgatttaca gtttattggg cctccattat taaatgattt agtcggtatt      2820
     cttctccgtt ttcgccaatt ctcatttgta gcttgtgcgg acgtggaaaa aatgtaccgt      2880
     caagtactca tacaacccga tcaacgtaac ttgcaacaaa ttgtgtggcg ggaaaataaa      2940
     cacagttcgt taagtttata tcaactgaac acagtgacat acggcactgc gtcagcgccg      3000
     tatcttgcca tgagatgttt gcgacagcta gcattagact gttcaaacga ggaggtttca      3060
     cgtttaatat taaattcatt ttacgttgat gatttaattt tttcgcacaa taacaaagat      3120
     aagttattgc agttgtgcaa agatgtcgcc gatgtcttaa ggactggttg ctttccattg      3180
     cgtaaatgga catttaattt tgatatcgct tcgtcagata gtttctttaa atcattatca      3240
     cttgataaat ctacgcaatg taaaacactt ggtctaggat ggtgtaacaa aagcgatgaa      3300
     ctgcacttta agtcagacat aaatatcaac attgatgtta cagcaatcac taaacgaaaa      3360
     atactttcaa taatatcaca agtgtatgac ccgctgggtt tattagcacc tttaataaca      3420
     actaccaaaa tacttattca aaaactttgg cttattaaaa tcggctggga tgatccagtt      3480
     cccactgata tagcaaaatc atttagcaaa atacttaatt cgttgcaaca tttatcggag      3540
     gtacgcattc cgcggcatgt aactacacaa aacgcaaata atttgcaatt acacattttt      3600
     acagacgcgt cacaagaggc ttacggcgct tgtgtttacg tacgcaccat ttgcgatcaa      3660
     tctaatgaag ttgttattaa attattgtgt gcgaaaagta aagttgcgcc gttaaaaccg      3720
     gttagcgtac cgcgtcttga gttgtgcggt gccttagtag gtgctcgttt gtataagaag      3780
     attatcgatt caattaattt acagttcgat gtgattaggt tttggactga ttccactatt      3840
     gtgcttggtt ggttacgtac tcatccagcc ttattaaaaa cgtttgtgca aaatcgaatt      3900
     gtagaaatta atgatttaac tagtgggtgt gtctggtcac acgtccaggg cgtgaataac      3960
     cccgcggatt tattatcgcg cggtgtcaat ttgctcgacc ttgttcataa taatttatgg      4020
     tggaccggtc ctaaattcat ttatgacact aattacaagg aaagtcattt agatgtaaaa      4080
     ttaattagtt tgcctgagct taaatcacat atagttgttt cagattcgtc acctaacatt      4140
     tttccttttg agaaattctc gtcttttatt cgaatgatac gatcagctgc atatgtatta      4200
     cggttcgttc acaacactcg gtacaaaacc gaacgtaaac acggcccgct tatagccgat      4260
     gaattacgtc actcgactaa tttacttgca agattatctc aaatggatgc atttccaaaa      4320
     gaatataatt cattagcaaa caattcatta aacattaaat attcacgtaa tttgtcagga      4380
     cttaatttgt tctttgacaa agatttatta attcgtgtag gaggtaggtt aagtaactcg      4440
     actgagttca cgtatgataa gaagcatcct atattgcttt gtagtaaaca tgtgttcact      4500
     atcctcttat ttaaatataa gcataaatat ttgtgtcacg cgggtcctca attgttattg      4560
     tcaagtattc gcgaagaatg gtggccgctg ggcggtcgga acttggcccg ttcagtagtt      4620
     cacgagtgcg ttaaatgtgt caggctaagc ggtaagacgt ttagcccaat tatgggcaac      4680
     ttaccaactg aacgtttaac gcctggcttt cctttcttac gtactggtac cgattattgt      4740
     ggtccagtgt acatcttgaa ccgtcaaggg agaggttcaa ggttaattaa atgttatatc      4800
     tgtatattca tttgttttgc tactcgcgca gtgcatctcg agctggttac taatctgtcc      4860
     actgatggat acatgtcttg tttaaaaaga tttatatcgc gacggggtaa accagtcgaa      4920
     atatattccg ataatggaaa aaattacgtt ggtgcggcta acgacttacg cgatttctta      4980
     tcaaaacatt caaacgcaat aattgaaaag gtcgctttag acaatatttc atttaaattt      5040
     attcccccat attctcctca ttttggtggc ttgtgggagg caggagtgag gtcttgcaag      5100
     taccatttgc gacgcgtggt agggaactct aacctcacct ttgaagaatt ctacacggta      5160
     ttggtgcaag tcgaggccgt cctcaattct cgcccgctaa ctcctctttc tgcagatgca      5220
     aacgaccttc aagcactgac tccggcgcat ttcgtaatcg gacgtccgct cacatcacct      5280
     gcctgcgctg acatcagtga catacctacc actcgtctgc cacgctatga ccgaatagaa      5340
     caaatgcgtc agcacttttg ggaacgatgg tctaaggagt atatcagcga gcttcaaacg      5400
     aggacaaagt ggaaggtcaa caagagtgac atcgttgtca atcggcttgt actcattaag      5460
     gaggaccatt tgccaccgtt aaagtggcgt cttggccgaa tagaacaagt ctatactgga      5520
     aaggacggag tttcccgagt agcaagaatt cgcaccgcca atggagaagt gcagcgttct      5580
     ttctcaaaga tttgtccatt gcctgtcgca atttctactg catgcggtga tagcgctgga      5640
     actcaagagt ttccagggcg gggagca                                          5667
//
ID   BEL-28_SpEx-LTR repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-28_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-287
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6936-6936 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 287 BP; 80 A; 65 C; 68 G; 74 T; 0 other;
     tgttcacgct gcgaggtaca agaggagagc ggggaagagg ggggcaacgt tcgacagagc        60
     gtcaacgagt gacatgtgac agtgacagtg acagtgacgt tggctccgcg ccgcgcatcg       120
     attcattcgt ccataggtat atatatacca ctgttcatca acgcgtcaga acaaccattg       180
     tcgtcatccg tttaacatcg tttaaatgta aattcaaaag tattaaaagt aatcatttgc       240
     atcagttgtg gagtacatca tttcttctcc tctactggtc cccaaca                     287
//
ID   BEL-29B_AA-I repbase;    DNA;    INV; 6334 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 24.02, Created)
DT   16-JAN-2019 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29B_;
KW   BEL-29B_AA-I; BEL-29B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6334
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6334
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 299-299 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6334 BP; 1725 A; 1589 C; 1643 G; 1377 T; 0 other;
     aaacttcaag attaaacatc atgactactg caaggcctaa tggatcgtcg acggatttgg        60
     agcaatccga aatctgtact tgtgtggcgt gtgacaaccc agaagtggcg gacgatctgg       120
     ttgcatgcga caaatgcgac aaatggtggc atttttcgtg tgctggggtc agcgagtcta       180
     tttcaagccg tgactggatc tgcccgagat gccgcccacc ctctgttccg gcttcattca       240
     ggtcaactac ttctagcaaa agagcagatt tgcaacgcaa acgcttggca gaacaacagg       300
     aactggagaa aaaagaactg gagttagaaa gaaagcagct agaactacag aaaaggcatt       360
     cgcaggaaca gtacgaattg gaagagtcga ttgtgggagc tgaaggtgat aaccgtagcg       420
     ttctgagccg cgtgaacgag attgaggctc gtgaaaggca ggtcgaagca tgggttgacc       480
     aacactcctc caccgggcta gcatccgctg taccacccgc cgaatcttta aatatgtacc       540
     gtcagttatc ccatgatgct ggaatcgata ttccgaccaa taaagtcgga catgttcctg       600
     atccaccact tcagcttccc atcgctactg agcctgcaag cgaggtcggt aaaccgtttg       660
     ctgacaattc agttctacgt actctgcaac agcagctggc tcagggcgga caacagcctc       720
     tttcagcaga gcaattgcta agcctggaag cccagttgcg aaaatgtcga ttggagatga       780
     tgcagcagga agaagaagcc tcaggtggcg acacactcac taaccctcac caagataccg       840
     ctgccagtaa aggagcaaga tcgaagattt cgattgttcg caatgccctc gaaccgccaa       900
     aaatttcaat cgtggattcg aaccagacga gattgaccga gagtggaatc ccggatcaaa       960
     gacatcgcag ttcaactctg ctcgaccagg caaacgaacc taaaggaacc agtagaacag      1020
     gtccacgaat tcattttgct cctaagcgaa atgctgtgaa acctccgttg attgaatcaa      1080
     cacggattga gcagacgcga tccagacacg cgcaatcaat tcctccacca ctcaacagca      1140
     cgctgcagcc gacgggtcca tatttcgaat tagatgccac cgctactcgt ttcaacaccc      1200
     ctctccacga agatcgccgc cacaactcta ccgagaatgg tgccttttca aaagccaccg      1260
     caaacgtcgg tggaagcatg aggctcgggg acagttcctt tgcaattccg aaccccggtg      1320
     cgacaagttt tgtacagcca ccaaatccca cgggtctccc tgtgaacttc aacctcggta      1380
     cgggctttct caacagacaa cccccagcgg taaatcacga accagtcaat ttacgtcggc      1440
     cttcccccga acaactagca gccaggcaag tcatgccgcg agatctcccg gacttctctg      1500
     gagatccaga agaatggccg attttctaca gcagcttcca caactcctca gtggcgtgtg      1560
     gattcaacga cgttgaaaac ctttcccgtt tgcagcgatg cttgaaaggg aacgcgctca      1620
     agtcggtaag atattatctt ttatctcccg agtcagtgcc taacgtgata gacactctgc      1680
     gtacgttgta cggtcgtccg gagatcatca tcaacaagtt gatccagtct gtacgtgaaa      1740
     cacccgcacc aaagccagag aggttggatt cgctgatcga ttttggaatt tcgattagaa      1800
     atctggcgca gcatctcatc gcagcggggc aacaagcaca cttgtcgaac ccagcgcttc      1860
     ttcaagagtt ggtggaaaaa ttgccggcca atgtgaagct gcagtgggcc cagcatctga      1920
     tgtacgagcc agaagcgagt ttgagaactt tcagtaactt catggggaca gttgttgagt      1980
     cggtcagcaa ggtggtgatc tacactggag ctcaacaagc caaaagcgaa aagcccaaaa      2040
     gcgtcaacgc ccattccgag ggcaatagta gcagaatttc agcggaagaa aattgtgaat      2100
     tcgaaaagcc gtgcctattt tgcgaaaatg tcggccaccg tctgaaaagc tgcacaaaat      2160
     tccagcaact ctcgatcgac gatcgatgga aaaccattca acgattaaag ttgtgtcgca      2220
     gttgcctcaa tcctcacggt cgtcgccctt gcagagtgtc cagccgatgt ggaattaacg      2280
     gctgtgagta ccgtcaccat caactgctac atggaaaacc tgacgcatcg atcaagccag      2340
     ttggttcctc agcggagaac catgttcacc accattgtgg ccagaccgtc ctcttccgaa      2400
     tcgttcccgt gacattgtac ggaaaatcca aagcagtaaa cgcgttcgcc ttcttagacg      2460
     agggatcttc tccgacgttg atcgagcaaa gtctggttaa agagctggga gtagaagggc      2520
     caacagttcc actgtgcctc aggtggaccg ctaacatgac gagaagcgag gacgagtctc      2580
     agactgtatc gctggaagta tcggaagtgg gacagaagaa gaagtttcag ttgatgcacg      2640
     cgcgcacagt cgagaatctt aacttgccgt cgcaaacact acgattcgcc gagctgcaag      2700
     cgggccaccc ccatctgaaa ggattaccga ttcggagcta cgaggccatc acaccgaaga      2760
     tattggtagg tctacgaaac ctacagctgg ccgtcccaca gaagatcaag gaggggaaca      2820
     gtggtatcat agcgacgaag actcgtttag gatggtgcat ctacggcagt ttgaataagg      2880
     tagaaaaaac gaacgagtac agttaccacg tgtgcgagtg tgaacccgag gagaaactgg      2940
     atcttcttat caaaaattac ttcaacgccg aagattgtcc gacaaactat ccggagaagc      3000
     tagagtccag cgaagaatcg aaagcacggc gaatcatgga ggagacgacg attagggtgg      3060
     gtgatcgatt tgcgacggga ctgctctgga agtccgactt tgtagagttg ccagacagtt      3120
     actccatggc ccttcgacgc ttggaatgcc ttgagagacg aatgtctcgc gatccgcttt      3180
     taaaggaaaa tatccaccgg caaattagcg agtaccagga gaagaggtat gctcaccgag      3240
     cgactgcaga cgagcttgcg aatgctgatc ccagacggac atggtatctt ccgctgggcg      3300
     ctgtgtgcaa ccctaagaaa ccaggaaaag tgcgcttgat ttgggatgca gccgcaaaag      3360
     tcgacgggat atccctaaat tccgttttac tctctggtcc agacctcctg acatcgctcc      3420
     cttccgtgca gttccgcttc cgacagtatc cagtagcagt tagtggtgac attaaggaga      3480
     tgtttcacca ggtacagatc atcgagcgtg accgaccggc tcaaagcttc ttgttccgtg      3540
     aaaatcctgt agacaaacct agcgtattca tgatggacgt tcttaccttc ggggccacta      3600
     gctccccctc atccgctcag ttcatcaaaa accgcaacgc gcaggatttc tccgagcgat      3660
     acccacgggc ctcggaggcg attcgtaagt gccactatgt tgacgactat ttagatagtt      3720
     ttgagtcaac cgacgaagca aagtcagtgg cgagcgaagt aaggtggatt cactcgaaag      3780
     gaggctttga gctgcggaac tggacctcca accaaaaggc tgttctagaa tatctagggg      3840
     agcatccgaa gctatccacc aaggatctcg ctatgaaggc tgattcagaa cgcgtgctgg      3900
     gaatgctgtg gtacactgaa gacgatgtgc tacggttttc aacatccttt cgcgaggaaa      3960
     tcgtcacact gatcgaagca ggtgcaaagc caacgaagcg gcaagtccta aagtgtgtca      4020
     tgagtctgtt cgaccccttg gggctgctgg cttgcgttct cgtgcacggg aaaataatga      4080
     tgcaagatat ctggaggagt gcgatcaagt gggacgaatg catcgacgat cagatcaacg      4140
     agcggtgggt gaagtggatc gagttactga aggacgtcaa cgaagttcgc gtaccacggt      4200
     gttacttcaa cgaagcaagt gctgctctgt acgattcgtt ggaggcccac attttcgtcg      4260
     atgcgagcga ggtggcgtat gcagcgttgg tatatttccg catcatcagg tcagacaaaa      4320
     cagcaacgtg cgctttggtg tcggcaaaaa cgaaggttgc tcctctcaaa tacgtgtcaa      4380
     ttcctcgttt ggagttgatg gcggcggtcc tgggagtacg tttactttca ttcgtgaagg      4440
     agaatcacac cgttcagatc caacgctgcg tctactggtc ggactcgcaa gtaacgttgg      4500
     cttggatacg gtcagagcat cgacgatacc gaccattcgt agcctgccgc atcggagaga      4560
     ttctatcgac gaccagtgtt aaacagtgga gatacgtccc gagcaaactc aacgttgccg      4620
     atgatgccac taaatggggt gaaaagctga gtcttgaggc gtcaagtcgg tggtttagcg      4680
     gcccaccatt ccttcaacaa ccagaaaaga tgtggcccgc gcagaaaaac agcattgcaa      4740
     ctaccgacga ggagcttcga gcgtgttacc tgcaccagga tgtaccagtt ctacacaatc      4800
     cgttcacctt tgaacggttc tccaaatgga atcggctttt gaggacaaca gcctacgtaa      4860
     ttcggttcat cggcagactg aaacgaactg gaaccggtgg aaaacgtcgt acatcagctt      4920
     tacagcagga tgaactacac gcagcagaag ttctcatttg gaaactggtt cagtccgaag      4980
     tttatcgcga tgaggtagtc gtcctttcga ataataggaa gctgtccaac ggaaaacaaa      5040
     ttgagctgga gaaatcaagt gtgctgtgga atgtaactcc cacgatggac gacgatgaaa      5100
     ttcttcgagt ggacggccgc attttcgcgg cgaaagagat gcctactgac gtcaagtttc      5160
     ctgtaatctt accaaggaaa cactacgtta cttatcttat ccttgacgac taccacagga      5220
     ggctgctaca cgccaatttc gaaacggtag tcaatgaagt gcgtcaacgt tatcacattc      5280
     ctcgactacg taccacagct cgaagtgtag taagccgctg cccatggtgc aaggtgcaca      5340
     aggctcgtcc agcaatgcca atgatgggtc cacttccgac agcccgtcta tcacccggaa      5400
     ttcgcccgtt tagctacgtc ggcatcgact atttcgggcc tatcctggtg aagataggtc      5460
     gtgcaacagc caaacgatgg atatgcctga taacgtgctt gaccatacgc gctgtacacg      5520
     tcgaagtagc gtacgacctt tctacgaagt catgcatcgc ctgcattcgc cgattcgttt      5580
     gtcgtcgagg cgcgcctatc gaaatctatt ccgataacgg tcgtaacttc accggagccg      5640
     atcgtgtttt gcgggaacaa atcaggcacc tcgaagaaga ggcagcaacg accttcacga      5700
     gtgcagcgac gaagtggttg ttcataccac cctctgctcc acacatgggt ggatcgtggg      5760
     agcggatggt acgttccgtc aagaacgcgt taaccagcat gcctcaggaa gacaaactgg      5820
     atgatgaagg actacagacc atgatagtag aagcggaagc gatagtgaac tcgcgcccgc      5880
     taacatatct accgttggac tcggcagaac aagaggcgct cacgccgaat cacttcatcc      5940
     ttggaagttc aacaggagtg aaacaacctg cggtgaagct cgaagattca gaggcagccg      6000
     ttcaaccttc tcgggacctg attcgaagga agattgatca cttctggaag cgttggatcc      6060
     tagagtacct cccaaccctg acgagacgag taaagtggct gcagaatacg aagccgatgc      6120
     ggactggaga cttggtcatc gtgatcgacg agaccagaag aaacggctgg atacgagggc      6180
     gtgttctaga cgtgactgct ggtagagatg gaagggttcg acaagcgtta gtacaaactt      6240
     caagtggact ctttcgacgg ccggtatcca aactggcgct attggatgta acaaaagaag      6300
     tgaaggatcc taccggacct cacggggagg ggaa                                  6334
//
ID   BEL-29B_AA-LTR repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 24.02, Created)
DT   16-JAN-2019 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29B_AA-I;
KW   BEL-29B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-578
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-578
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 297-297 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 578 BP; 193 A; 108 C; 103 G; 174 T; 0 other;
     tgttgctaca gctaccttac cggcagcact ggccaccaca cgttcatcgt accgttgaag        60
     ctgtgttgaa caccgaaaag aatactgaat tacgtataca tgtaaactgc tggatatgat       120
     tgtagggaaa aacagattcg attgtttacc tctgccatac cacatttatt tccatcctga       180
     gtaaataatt agaattatta gttacaacgc tgtaagtaaa ctcctaagac actacacact       240
     atttgctaac accaaatgtt atctaggaac atccaattcc atccaaaaag ggtcccttgt       300
     aaccgctgta gccaaaatag gattctcgcc agtcggtagg ttataaagag attattatat       360
     gctttagatt aattatgttt ccatgattaa ttaagcaggt gaaggatata aaagaagagc       420
     aagtcaatag tttaatcgct tgaactatat ggtgcactgt ttaatgtaag tttaagttga       480
     cacagaattg ttcaaaacat aatgaattcg attttccagc ttgaagcccg taataaactt       540
     gctatcaaga acagtgtggt tttgttccta aagtaaca                               578
//
ID   BEL-29N1_AnFu-I repbase;    DNA;    INV; 2878 BP.
XX
AC   .
XX
DT   05-JAN-2022 (Rel. 27.02, Created)
DT   05-JAN-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-29N1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-2878
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 698-698 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..2767
FT                 /product="BEL-29N1_AnFu-I_1p"
FT                 /note="PHD zinc finger, reverse transcriptase, and
FT                 integrase."
FT                 /translation="MSEESRDCNACDQANTVDDMVQCNECDKWYHYACAGV
FT                 NAEIAKRKWNCGCTMGVKSEESEKVCPDPRKEATATVGKAAQSYVREAKHR
FT                 VANSEVLPPSIDPLVVPLGQRRTESRTANRAPSTKASSTASKTSARTALER
FT                 LARTQELERKMAEKEFEMKMARMELEQEKLRIDLEEKMECGFERSSVSSHS
FT                 KTDXKWVHNQRCAIVANSVNSKAQHSADERSPITQPIPTPEPLVEAADLQA
FT                 PGIPLRWTAGVIRKENDSERVNVQISARDGSCRYELADAHTMEKLSLPLQE
FT                 LDCTNLTTRFPHFQNLPIQSFLKAEPKLLIGLQRLDLMTPLEIHKGQPSEP
FT                 VAVRSPLGWAVYGPINTGTTNILLHHSEPDRPPESDSDSELNNLLKSHFAL
FT                 EEVGISSSSMPEPKEIARAKQMLQNTTVRRGDRFETGLLWKTDEVKFPNSY
FT                 PMALKRLLSLERKLGLVWDAAAKVEGVSLNSLLLKGPDLLVTLPGVLSKFR
FT                 ERRVAFGGDVEKMFHQIRIRREDTHAQRFLFRSDPTKQPSVYIMDVATFGA
FT                 SCSPCSAQYIMHRNAQENALEFPQSAKAMQIKRSVKGTQVPLSSEEYRKAE
FT                 TFLLRVAQQDHYGSELKTLCNDDKKGIDKRSTLYKLSPLIDEHGLLRIDGR
FT                 TIPVITSLIVDSYHRKSGHANRETVVNEIRQRYYISYLRSLVDRRTKSCQH
FT                 CKVHKTKQYHPRMAPLSAERLNTHTHPFSHVGVDYLGPLSIVNGRRKEKRY
FT                 VAVFTCLVTRAVHLEVAYQLSTNSFITAVRRFVSRRGSPTQIFSDNGTNFV
FT                 GASNELEREIAAMNYGAADTFTNARTTWSFNPPSAPHMGGVWERMVRSVKE
FT                 ALKALDGRRLEAGSDGRIRQAVVRTAAGKLLKRAVVKLAVLKTEIK"
XX
SQ   Sequence 2878 BP; 884 A; 639 C; 734 G; 620 T; 1 other;
     ttcaaaaatt gtaaagcaat aatatattgt gctctaaaaa tcgtcttgta tatttcgtgg        60
     aacatttacg atgtcggaag aaagtcgtga ctgcaatgcc tgcgatcagg cgaacaccgt       120
     ggatgatatg gtacagtgca atgagtgcga taagtggtat cattacgcgt gtgccggcgt       180
     caatgcagaa atcgcgaaaa ggaagtggaa ctgtggttgt acaatgggtg tgaaaagcga       240
     agaaagtgaa aaagtgtgtc cagatcctag aaaagaagcc accgcgacgg tcgggaaagc       300
     tgctcaaagc tacgttagag aagccaagca tcgcgtagcc aatagcgaag ttctaccgcc       360
     tagcattgat ccactagtag taccactagg acaaagacgc accgaatcgc ggactgctaa       420
     cagggcccca agcaccaaag cctcttccac cgcatcgaaa acgtccgcgc gaacagcgct       480
     cgaacggctc gctaggacgc aagagctaga gcggaaaatg gccgagaaag agttcgagat       540
     gaaaatggcc agaatggagc tcgaacagga aaagctccga attgatttag aagaaaaaat       600
     ggagtgtggt tttgaaagat cgagtgttag ttcccattcg aaaacggata staaatgggt       660
     gcataatcaa cggtgcgcga tagtggcgaa cagtgtgaat tcgaaagctc aacactcggc       720
     tgacgaacgc tcacctatta cgcagcccat tccgacaccc gaaccactgg tggaagcggc       780
     agacctgcag gcccccggaa tcccgctacg gtggacggcc ggtgtcatca gaaaggaaaa       840
     tgactcggag agagtgaacg tgcagatttc agcgagggac gggagctgcc gctatgagct       900
     tgctgacgct cataccatgg aaaagctaag tttgccgctc caagaactcg actgtacaaa       960
     cctaaccaca cgctttcctc actttcagaa tctgccaata cagtcgtttc tgaaagctga      1020
     gccaaagctg ttaatcgggc tgcaacgtct ggatctgatg acgccgcttg agatccacaa      1080
     agggcagccg agtgaaccag tagcagtgag aagtccattg ggttgggccg tgtacggccc      1140
     catcaacacc ggtacaacca acatcctgct gcatcacagc gagcctgatc gaccaccgga      1200
     atcggatagt gacagtgaat taaataactt attgaaaagt cattttgcgt tggaagaggt      1260
     aggcatttcc agcagctcga tgccagaacc aaaagagata gctagggcca aacaaatgct      1320
     tcaaaacacc actgtgcgtc gtggtgatag gtttgagact gggttattgt ggaaaacaga      1380
     tgaggtgaaa tttcccaaca gctatcccat ggcgcttaag cgtttactaa gcctagaacg      1440
     aaagttaggt ttagtctggg acgcggcggc taaagtagaa ggcgtttctt taaattccct      1500
     gttgctgaag ggacctgatc tgttggtaac gctacctgga gtgcttagca agtttagaga      1560
     gagacgagtg gcgtttggag gggatgttga gaaaatgttc catcaaataa ggatacgtag      1620
     agaagatacc catgctcaaa ggtttctgtt ccgatccgac cctaccaagc aaccttcggt      1680
     ttacataatg gatgtcgcga cttttggcgc gtcctgttct ccttgctccg cacaatacat      1740
     aatgcatcga aatgcacaag aaaacgccct tgaattcccg cagtcagcaa aagccatgca      1800
     aattaaacga tcggtcaaag gaacacaagt ccctctaagt agcgaagaat accgcaaggc      1860
     cgaaaccttt ctacttcgtg tggcccaaca agatcactat ggtagcgaat taaaaaccct      1920
     gtgcaacgac gacaaaaaag ggatcgataa aagaagcaca ctttacaaac tgtcgccgtt      1980
     gatagatgaa catggtttat tgcgaattga tggtcgtacc atcccagtaa taaccagttt      2040
     gatagtagac agctaccata gaaaatcggg tcatgccaat cgcgaaacgg tcgtgaatga      2100
     gattcgccag agatattata tatcatatct acgatcgcta gttgatagaa ggacgaaaag      2160
     ctgccaacac tgcaaggtac acaaaaccaa acagtatcat cctcgaatgg caccactatc      2220
     ggcggaacga cttaatactc acactcaccc gtttagccac gtaggcgtag attacctggg      2280
     cccgctcagc atagtgaatg gtagacgaaa ggagaagaga tatgtggcag tattcacatg      2340
     cctggtcact agagcagtac atttagaagt cgcgtatcaa ctgtctacta attcgttcat      2400
     cacggcagta aggaggttcg tgtcacggag aggttcacca acccaaatat tctccgataa      2460
     tggtacgaat tttgtgggtg caagcaacga gctggaacga gaaatcgccg caatgaacta      2520
     cggagctgcc gatactttta ccaacgcccg taccacttgg tcgtttaacc caccatcagc      2580
     accgcacatg gggggtgtat gggagcgaat ggtacgaagt gttaaggagg cattaaaggc      2640
     gcttgatggt cgaaggcttg aggcgggtag cgatggtcga atacgacaag ctgtagtgcg      2700
     tacagccgca ggcaaacttc taaaaagagc agtagtcaag ctagcagtat tgaaaactga      2760
     aattaagtaa tggattaggg ataaacgccg acaaatactt aagatagaaa tgcgtacctt      2820
     aagtaatcgt gctacttgta agcaaattct tacaggcaat agaatttacg gggtggag        2878
//
ID   BEL-29N2_AnFu-I repbase;    DNA;    INV; 3043 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-29N2_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3043
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 658-658 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..2932
FT                 /product="BEL-29N2_AnFu-I_1p"
FT                 /note="PHD zinc finger, reverse transcriptase, and
FT                 integrase."
FT                 /translation="MSEESRDCNACDQANTVDDMVQCNECDKWYHYACAGV
FT                 NAEIAKRKWNCGCTMGVKSEESEKVCPDPRKGATATVGKAAQSYVREAKHR
FT                 VANSEVLPPSIEPLVVPLGQRRTESRTANRAPSTKASSTASKTSARTALER
FT                 LARTQELERKMAEKEFEMKMARMELEQEKLRIDLEEQMECGSERSSVSSHS
FT                 KTAKWVHNQRCAIVANSVHSEAQHSADERSPITQPIPTPEPLVEAADLQAP
FT                 GIPLRWTAGVIRKENDSERVNVQISARDGSCRYELADAHTMEKLSLPLQEL
FT                 DCTNLTTRFPHFQNLPIQSFLKAEPKLLIGLQRLDLMTPLEIHKGQPSEPV
FT                 AVRSPLGWAVYGPINTGTTNILLHHSEPDRPPESDSDSELNSLLKRHFALE
FT                 EVGISSSSMPEPKEIARAKQMLQNTTVRRGDRFETGLLWKTDEVKFPNSYP
FT                 MALKRLLSLERKLEKNPDLAKNVHQQVQEYLKMGYAHKATQSELDSANPLR
FT                 IWYLPLNVVSHPRKPNKKRLVWDAAAKVEGVSLNSLLLKGPDLLVTLPGVL
FT                 SKFRERRVAFGGDVEKMFHQIRIRREDTHAQRFLFRSDPTKQPSVYIMDVA
FT                 TFGASCSPCSAQYIMHRNAQENALEFPQSAKAMQIKRSVKGTQVPLSSEEY
FT                 RKAETFLLRVAQQDHYGSELKTLCNDDKKGIDKRSTLYKLSPLIDEHGLLR
FT                 IDGRTIPVITSLIVDSYHRKSGHANRETVVNEIRQRYYISYLRSLVDRRTK
FT                 SCQHCKVHKTKQYHPRMAPLSAERLNTHTHPFSHVGVDYLGPLSIVNGRRK
FT                 EKRYVAVFTCLVTRAVHLEVAYQLSTNSFITAVRRFVSRRGSPTQIFSDNG
FT                 TNFVGASNELEREIAAMNYGAADTFTNARTTWSFNPPSAPHMGGVWERMVR
FT                 SVKEALKALDGRRLEAGSDGRIRQAVVRTAAGKLLKRAVVKLAVLKTEIK"
XX
SQ   Sequence 3043 BP; 937 A; 686 C; 770 G; 650 T; 0 other;
     ttcaaaaatt gtaaagcaat aatatattgt gctctaaaaa tcgtcttgta tatttcgtgg        60
     aacatttacg atgtcggaag aaagtcgtga ctgcaatgcc tgcgatcagg cgaacaccgt       120
     ggatgatatg gtacagtgca atgagtgcga taagtggtat cattacgcgt gtgccggcgt       180
     caatgcagaa atcgcgaaaa ggaagtggaa ctgtggttgt acaatgggtg tgaaaagcga       240
     agaaagtgaa aaagtgtgtc cagatcctag aaaaggagcc accgcgacgg tcgggaaagc       300
     tgctcaaagc tacgttagag aagccaagca tcgcgtagcc aatagcgaag ttctaccgcc       360
     tagcattgag ccactagtag taccactagg acaaagacgc accgaatcgc ggactgctaa       420
     cagggcccca agcaccaaag cctcttccac cgcatcgaaa acgtccgcgc gaacagcgct       480
     cgaacggctc gctaggacgc aagagctaga gcggaaaatg gccgagaaag agttcgagat       540
     gaaaatggcc agaatggagc tcgaacagga aaagctccga attgatttag aagaacaaat       600
     ggagtgtggt tctgaaagat cgagtgttag ttcccattcg aaaacggcta aatgggtgca       660
     taatcaacgg tgcgcgatag tggcgaacag tgtgcattcg gaagctcaac actcggctga       720
     cgaacgctca cctattacgc agcccattcc gacacccgaa ccactggtgg aagcggcaga       780
     cctgcaggcc cccggaatcc cgctacggtg gacggccggt gtcatcagaa aggaaaatga       840
     ctcggagaga gtgaacgtgc agatttcagc gagggacggg agctgccgct atgagcttgc       900
     tgacgctcat accatggaaa agctaagttt gccgctccaa gaactcgact gtacaaacct       960
     aaccacacgc tttcctcact ttcagaatct gccaatacag tcgtttctga aagctgagcc      1020
     aaagctgtta atcgggctgc aacgtctgga tctgatgacg ccgcttgaga tccacaaagg      1080
     gcagccgagt gaaccagtag cagtgagaag tccattgggt tgggccgtgt acggccccat      1140
     caacaccggt acaaccaaca tcctgctgca tcacagcgag cctgatcgac caccggaatc      1200
     ggatagtgac agtgaattaa atagcttatt aaaaagacat tttgcgttgg aagaggtagg      1260
     catttccagc agctcgatgc cagaaccaaa agagatagct agggccaaac aaatgcttca      1320
     aaacaccact gtgcgtcgtg gtgataggtt tgagactggg ttattgtgga aaacagatga      1380
     ggtgaaattt cccaacagct atcccatggc gcttaagcgt ttactaagcc tagaacgaaa      1440
     gttagagaag aatccagacc ttgccaagaa cgttcaccaa caagtacaag agtatctgaa      1500
     aatgggttac gcgcataaag ctacacaaag cgaattagat tcggcgaatc ccctacgcat      1560
     ttggtacctt cccctgaatg tggtatctca tccgcgtaaa ccaaacaaga agcgtttagt      1620
     ctgggacgcg gcggctaaag tagaaggcgt ttctttaaat tccctgttgc tgaagggacc      1680
     tgatctgttg gtaacgctac ctggagtgct tagcaagttt agagagagac gagtggcgtt      1740
     tggaggggat gttgagaaaa tgttccatca aataaggata cgtagagaag atacccatgc      1800
     tcaaaggttt ctgttccgat ccgaccctac caagcaacct tcggtttaca taatggatgt      1860
     cgcgactttt ggcgcgtcct gttctccttg ctccgcacaa tacataatgc atcgaaatgc      1920
     acaagaaaac gcccttgaat tcccgcagtc agcaaaagcc atgcaaatta aacgatcggt      1980
     caaaggaaca caagtccctc taagtagcga agaataccgc aaggccgaaa cctttctact      2040
     tcgtgtggcc caacaagatc actatggtag cgaattaaaa accctgtgca acgacgacaa      2100
     aaaagggatc gataaaagaa gcacacttta caaactgtcg ccgttgatag atgaacatgg      2160
     tttattgcga attgatggtc gtaccatccc agtaataacc agtttgatag tagacagcta      2220
     ccatagaaaa tcgggtcatg ccaatcgcga aacggtcgtg aatgagattc gccagagata      2280
     ttatatatca tatctacgat cgctagttga tagaaggacg aaaagctgcc aacactgcaa      2340
     ggtacacaaa accaaacagt atcatcctcg aatggcacca ctatcggcgg aacgacttaa      2400
     tactcacact cacccgttta gccacgtagg cgtagattac ctgggcccgc tcagcatagt      2460
     gaatggtaga cgaaaggaga agagatatgt ggcagtattc acatgcctgg tcactagagc      2520
     agtacattta gaagtcgcgt atcaactgtc tactaattcg ttcatcacgg cagtaaggag      2580
     gttcgtgtca cggagaggtt caccaaccca aatattctcc gataatggta cgaattttgt      2640
     gggtgcaagc aacgagctgg aacgagaaat cgccgcaatg aactacggag ctgccgatac      2700
     ttttaccaac gcccgtacca cttggtcgtt taacccacca tcagcaccgc acatgggggg      2760
     tgtatgggag cgaatggtac gaagtgttaa ggaggcatta aaggcgcttg atggtcgaag      2820
     gcttgaggcg ggtagcgatg gtcgaatacg acaagctgta gtgcgtacag ccgcaggcaa      2880
     acttctaaaa agagcagtag tcaagctagc agtattgaaa actgaaatta agtaatggat      2940
     tagggataaa cgccgacaaa tacttaagat agaaatgcgt accttaagta atcgtgctac      3000
     ttgtaagcaa attcttacag gcaatagaat ttacggggtg gag                        3043
//
ID   BEL-29_AA-I repbase;    DNA;    INV; 6352 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_AA_;
KW   BEL-29_AA-LTR; BEL-29_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions 1598185 1591834.
XX
CC   Positions [5409-5693] - Integrase core
CC   'CTAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..5693
FT                 /product="BEL-29_AA-I_1p"
FT                 /translation="MTTERPNGSSTDLEQSEIFTCAACANPEVADDLVACD
FT                 KCDKWWHFTCAGVSDSISSRDWICPRCRPPSIPASLRSTTSSKRADLQRKR
FT                 LAEQQELEKKELELERKQLELLKRHSQEQYELEESIVGAEGDNRSVLSRVN
FT                 EIEARERQVEAWVDQHSSTGLTSAVPPAGSLNLYRQLAQDAGIDISTNKVG
FT                 PVPDPPLQLPIITEPANEVGKSFVDNPVLRTLQQQLAQGGQQPFSAEQLLS
FT                 LEAQLRKCRLEMMQQEEEASGGDALTNRHQDTGANRGARPKNPIARNALEP
FT                 PKFAIESSNQTRLTESGIPDQRHRSSTLLAQEDESKGTSRTGPRIRFAPKQ
FT                 DAVKPPLIESTLIEQTRLRHAHSIPPPLNSTLQPTGRYFQLDAPATRFNTP
FT                 PREDPRHSSPENGAFRRATGNVRGSMRQGDSSFAIPNPGATSFVQPPNPAV
FT                 PPVNFNLGTGFLNRQPSALNPDQINLRRPSPEQLTARQVMPRDLPDFSGDP
FT                 EEWSIFYSSFQNSSVACGFNDVENLSRLQRCLKGNALKSVRYYLLSPESVP
FT                 NVIDTLRTLYGRPEIIINKLIQSVRETHAPKPEKLESLIDFGISIRNLTQH
FT                 LIAAGQQAHLSNPVLLQELVEKLPANVKLQWAQHLMYEPEASLRTFSDFMG
FT                 TVVESVSKVVIYTGAQQARSEKPRNKDKSFVNAHSEDSSSSAPAGENYEVE
FT                 KPCLFCEKVGHRLKSCTKFQQLSIDDRWKNVQRLKLCRSCLNPHGRRPCRM
FT                 SSRCGINGCEFRHHQLLHGKSDAPIQPAGTSAENHVHHHCGQSVLFRIVPI
FT                 TLYGKSKSVNAFAFLDEGSSATLIEQSLVQELGVEGPTVPLCLRWTANMTR
FT                 SEDESQTVSLEVSEVGQKKKFQLMHVRTVENLNLPSQTLRFAELQVGHPHL
FT                 KGLPIRSYEAVTPKILVGLRNLQLAVPQKIKEGNSGIIATKTRLGWCVYGS
FT                 LNRVEKTDEYNYHVCECESEEKLDRLIKNYFNAEDCPTNYPEKLESNEELK
FT                 ARRIMEKTTIRVGDRFATGLLWKSDFVELPDRYSMALRRLECLERRMSRDP
FT                 FLKENIRRQISEYQEKRYAHRATTDELANADPRRTWYLPLGVVYNPKKPGK
FT                 VRLIWDAAAKVDGISLNSVLLPGPDLLTSLPSVQFRFRQYPVAVSGDIKEM
FT                 FHQVQVIERDRPAQSFLFRENPDDKPSVFMMDVLTFGATSSPSSAQFIKNR
FT                 NAQEFSERYPRATEAIRKCHYVDDYLDSFVSTDEAKSVASEVRWIHSKGGF
FT                 ELRNWASNRKAVLEYLGELPKLYTKDLAMKADSERVLGMLWHTEDDVLRFS
FT                 TSFREEIVTLIEAGSKPTKRQVLKCVMSLFDPLGLLACVLVHGKIMMQDIW
FT                 RTAIKWDECIDDQINERWVKWIELLQDVNEVRVPRCYFNGASATLYDSLEA
FT                 HIFVDASEVAYAALVYFRVIRSDETASCALVSAKTKVAPLKYVSIPRLELM
FT                 AAVLGVRLLSFVKESHTFQIKRCVYWSDSQVTLAWIRSEHRRYRPFVACRI
FT                 GEILSTTSDNQWRYIPSKLNVADDATKWGEKLCLDASSRWFSGPPFLQQPE
FT                 NMWPAQKKSIATTDEELRASYLHQDVPVLHNPFTFERFSKWNRLLRTTAYV
FT                 IRFIGILKRTGTGEKRRTSALRQDELHAAEVMIWKLVQSEAYRDEVIVLSK
FT                 NKELSSGKRIELEKSSVLWNLAPKMDDDEILRVDGRISAAKEMSNDVKFPV
FT                 ILPRKHYATHLILEDYHRRLLHANFETVVNEVRQRYHIPRLRTTARSVISR
FT                 CQWCKVHKARPAMPMMGPLPTARISPGTRPFSYVGIDYFGPILVKIGRATA
FT                 KRWVCLITCLTIRAVHVEVAYDLSTKSCIACIRRFVCRRGAPIEIYSDNGR
FT                 NFTGADRVLQEQIRRLEE"
XX
SQ   Sequence 6352 BP; 1749 A; 1566 C; 1646 G; 1391 T; 0 other;
     aaacttcaag ataatatatc atgaccactg aaaggcctaa tgggtcgtcg acggatttgg        60
     agcaatccga aatcttcact tgtgcggcgt gtgccaaccc agaagtagcg gacgatctgg       120
     ttgcatgcga caaatgcgac aaatggtggc attttacgtg tgctggggtc agcgattcaa       180
     tttcaagtcg tgactggatc tgcccgaggt gccgcccacc ctccattccg gcttcattaa       240
     gatcgacaac ttctagcaaa agagcagatt tgcaacgcaa acgcttggca gaacaacagg       300
     agctggagaa aaaagaactg gagttggaaa gaaagcagct agaactattg aaaaggcatt       360
     cgcaggagca gtacgaattg gaagagtcaa ttgtgggagc agaaggtgat aaccgtagcg       420
     ttctgagccg cgtgaacgag attgaagctc gtgaaaggca ggttgaagca tgggtggacc       480
     aacactcctc caccggacta acatccgctg taccacccgc cggatcttta aatctgtacc       540
     gtcagttagc ccaggatgct ggcatcgata tttcaaccaa taaagtcgga ccagttcctg       600
     atccaccact tcagcttccc atcattactg agcctgcaaa cgaggtcggt aaatcgtttg       660
     ttgacaatcc agtactacgt actctgcagc agcagctggc tcagggcgga caacagcctt       720
     tttcagcaga acaattgcta agcttggaag cccagttgag aaaatgccga ttggaaatga       780
     tgcagcagga agaagaagca tcaggtggtg acgccctcac caatcgtcac caagataccg       840
     gtgccaatag aggagcaagg ccgaagaatc cgattgcgcg caatgctctc gaaccgccaa       900
     aatttgcaat agagagttcg aaccagacga gattgaccga gagtggaata ccggatcaaa       960
     gacatcgcag ttcaactcta ctcgcccagg aagacgaatc taaaggaacc agtagaacag      1020
     gcccacgaat tcgcttcgcc cctaagcaag atgctgtgaa gccaccgttg atcgaatcaa      1080
     cactgattga gcagacgcga ttgagacacg cgcactcaat tcctccacca ctcaacagca      1140
     cgctgcagcc gacgggtcga tacttccaat tggatgcccc tgctactcgt ttcaacactc      1200
     ctcctcgcga agatccccgc cacagctctc ccgaaaacgg tgcttttcga agagccactg      1260
     gaaacgtcag gggaagcatg agacaagggg acagttcctt tgcaattccg aaccccggtg      1320
     cgacaagttt tgtacagcca ccaaatcccg ctgttccccc agtgaacttc aacctcggca      1380
     cgggctttct caacagacaa ccgtcagcgt tgaatccaga tcaaatcaac ttacgtcgtc      1440
     cttcccccga acaactaaca gccaggcaag tcatgccacg agatctcccg gacttctctg      1500
     gagatccaga ggaatggtcg attttctaca gcagtttcca aaactcctca gtggcgtgtg      1560
     gattcaacga cgtcgaaaac ctttcccgtt tacaacgttg cttgaaaggg aacgcgctaa      1620
     agtcggtaag atattatcta ctatcgcccg agtcagtgcc taacgtgata gacactttgc      1680
     gaaccttgta cggtcgtccg gagatcatca tcaacaagtt gatccagtcc gtacgtgaga      1740
     cacacgcgcc aaagcctgag aagttggaat cccttatcga ttttgggatt tcgattagaa      1800
     atctgacgca acatctcatt gcagcgggac aacaagcaca cctgtcgaac ccggtgcttc      1860
     ttcaagagtt ggtagaaaaa ttgccggcca acgtgaagct acaatgggcc cagcatctga      1920
     tgtacgagcc agaagcgagt ttgagaacct tcagtgactt catggggaca gtcgttgagt      1980
     cggtcagcaa ggtggtgatc tacacggggg ctcaacaagc caggagcgaa aagccccgaa      2040
     ataaagataa aagcttcgtc aatgctcact ccgaggatag cagtagcagc gctccagcgg      2100
     gagaaaatta tgaagtcgaa aagccgtgcc tattttgcga aaaagtcggc caccgtctga      2160
     aaagctgtac aaaattccag caactttcga ttgacgatcg gtggaaaaac gttcaacgat      2220
     tgaagttgtg tcgcagttgc ctcaatcctc acggtcggcg cccttgtaga atgtccagcc      2280
     gatgtggaat taacggatgt gagttccgtc accatcaact gctgcatgga aaatctgacg      2340
     caccgatcca accagctggg acctcagcgg agaaccatgt tcaccaccat tgtggtcaat      2400
     ccgtcctctt ccgaatcgtt ccgataacat tgtacggaaa atcaaagtca gtaaacgcgt      2460
     tcgccttctt agacgaggga tcttctgcga cattgatcga gcaaagtctg gttcaagagc      2520
     tgggagtaga agggccaaca gtcccactgt gtcttaggtg gacagctaac atgacgagaa      2580
     gcgaggacga gtcacagact gtgtcgctgg aagtgtcgga agtgggacaa aagaagaaat      2640
     tccagctgat gcatgtacgc accgtcgaga atctcaactt accatcgcaa acactacgat      2700
     tcgctgagct gcaagtgggc catccccacc tgaaaggatt gcctattcgg agctacgagg      2760
     ccgtaacacc gaagatattg gtcggcctac gaaacctgca gctggccgtc ccgcagaaga      2820
     tcaaagaggg gaacagtggc ataattgcga caaagacccg tttaggatgg tgcgtctacg      2880
     gaagtttgaa tagggtagaa aaaacggatg aatacaatta ccatgtgtgc gagtgtgaat      2940
     ctgaggagaa actggatcgc cttattaaaa attacttcaa cgccgaagat tgtccgacaa      3000
     actacccgga gaagctagag tccaatgaag aattgaaagc acggcgaatc atggagaaaa      3060
     cgacgattag ggtgggtgat cgatttgcga cgggactgct ctggaagtcc gattttgtag      3120
     agttgccgga ccgttactca atggcccttc gacgcttgga atgccttgag agacgaatgt      3180
     ctcgcgatcc ctttttaaag gaaaatatcc gccggcaaat tagcgagtac caggagaaga      3240
     ggtatgctca ccgagcgact acagacgagc ttgcgaatgc tgatcccaga cggacctggt      3300
     atcttccact aggcgttgtg tacaacccca agaaaccagg aaaagtgcgc ttgatttggg      3360
     atgcagcagc gaaagtcgac gggatatctc taaattccgt gctactccca ggccctgacc      3420
     ttctgacatc actcccttcc gtacagttcc gctttcgaca gtacccagtg gcagtaagcg      3480
     gtgacatcaa ggagatgttt caccaggtac aggtcatcga gcgtgaccga ccagcacaaa      3540
     gcttcttgtt ccgtgaaaat cctgacgaca aacccagcgt attcatgatg gacgttctca      3600
     ccttcggggc cactagttct ccctcatccg cccagttcat caaaaaccgc aacgcgcagg      3660
     agttctccga gcgataccca cgggccacgg aggcgattcg taagtgccac tatgttgacg      3720
     actacttaga tagttttgtg tcaaccgacg aagcaaaatc agtggcgagc gaagtaaggt      3780
     ggattcactc gaaaggaggc tttgaactgc ggaactgggc atctaatcga aaggctgtcc      3840
     tagaatatct aggagagctt ccgaagctat acaccaaaga tctcgctatg aaggctgatt      3900
     cggaacgcgt gctgggaatg ctgtggcaca ctgaggatga tgttctacgg ttttcgacat      3960
     catttcgtga ggaaattgtc acactaattg aagcgggttc aaagccaacg aagcggcaag      4020
     tcttaaagtg tgtgatgagt ctgttcgacc ccttagggct gctggcttgc gttctcgtgc      4080
     acgggaaaat aatgatgcaa gatatctgga ggactgcgat caagtgggat gaatgcatag      4140
     acgaccagat caatgagcgg tgggtgaagt ggattgagtt gctgcaagac gtcaacgaag      4200
     ttcgcgtacc gcggtgctac ttcaacggag caagtgctac tttgtacgat tcgttggagg      4260
     cccacatttt cgtcgatgca agtgaggtgg cgtacgctgc attggtgtat ttccgtgtca      4320
     tcagatcgga cgaaacagca tcgtgcgctt tagtttcggc caaaacaaag gttgctcctc      4380
     tcaaatacgt atcaatcccc cgtttggagt tgatggcggc ggttctggga gtacgtttac      4440
     tctcattcgt gaaggagagc cacacctttc agatcaaacg ctgcgtctac tggtcggact      4500
     cgcaagtaac gttggcttgg atacggtcag agcatcgacg ttaccgacca ttcgtagcct      4560
     gccgcatcgg agaaattcta tcgacaacca gtgataatca gtggagatac atcccgagca      4620
     aactcaacgt tgccgatgat gccactaagt ggggtgagaa actgtgtctt gatgcctcaa      4680
     gtcggtggtt tagcggtcca ccattccttc aacaaccaga aaatatgtgg cccgcgcaga      4740
     aaaagagcat tgcaacgact gatgaggagc tccgagcgag ttacctgcat caggatgtac      4800
     cagttctgca caatccgttc acttttgaac ggttctccaa atggaatcgg cttttgagga      4860
     caacagccta cgtaattcgg ttcatcggca tactgaaacg cactggaacc ggtgaaaaac      4920
     gccgtacctc agctttacgg caggatgaac tacacgcagc agaagttatg atctggaaac      4980
     tggtccagtc cgaagcttat cgcgacgagg taatcgtcct ttcgaaaaat aaggagctgt      5040
     cgagcgggaa acgaattgag ctggaaaagt caagtgtgct gtggaattta gctcctaaga      5100
     tggatgacga tgaaattctt cgagttgacg gtcggatttc cgcagcgaaa gagatgtcta      5160
     atgacgtcaa gtttcctgta atcttgccaa ggaaacacta cgctactcat cttatccttg      5220
     aagactacca caggaggctg ctacatgcca attttgaaac ggtagtcaat gaagtgcgtc      5280
     aacgttacca cattcctcga ctacgtacca cagctcggag tgtaatcagc cgctgccaat      5340
     ggtgcaaggt gcataaggcc cgtccagcga tgccaatgat gggaccactt ccgacagccc      5400
     gcatatcacc cggaacacgc ccgtttagct acgtcggcat cgactatttc gggcctatcc      5460
     tggtgaagat aggtcgagca acagcgaagc gatgggtatg tctgataaca tgcttgacca      5520
     tacgtgccgt acacgtcgag gtagcgtacg acctgtctac gaagtcatgc atcgcctgca      5580
     ttcgccgttt cgtttgccga cgcggcgcac ctatagaaat ctactccgat aacggccgta      5640
     acttcactgg agcagatcgt gttttgcaag aacaaataag gcgcctcgaa gagtaagcgt      5700
     ctacgacttt cacgaatact acgacgaaat ggttgtttat accgcccttt gctccccaca      5760
     tgggtggagc atgggagcgg atggtacgtt ctgtcaagaa cgcgttaacc agtatgcctc      5820
     aggacgacaa actggatgat gaaggactcc aaaccattat agtagaagcg gaagcgatag      5880
     tgaactcgcg cccgttgacg tatctaccgc tggattcagc ggagcaagag gcgctcacgc      5940
     ctaatcactt catccttgga aattcaacag gagtaaagca acctgcggtg aagctcgaag      6000
     attcagaggc agcagttcaa ccttctctga acctgattcg acgaaggatt gatcacttct      6060
     ggaagcgttg gatcctagag tacctcccaa ccctgacgag acgagtaaag tggctgcagg      6120
     atactaagcc gatgcggatc ggagatttgg tcatcatgat cgacgagact agaagaaacg      6180
     gatggatacg agggcgtgtc ttagacgtca ctgcaggtag agacggaaga gttcgccaag      6240
     cgttagtgca aacttcaggt ggactttttc gacggccggt atccaaactg gcggtgctgg      6300
     atgtagctga acgtgaagtg gaggacccta ccgctcctca cggggagggg ga              6352
//
ID   BEL-29_AA-LTR repbase;    DNA;    INV; 634 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_AA_;
KW   BEL-29_AA-I; BEL-29_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-634
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions 1591833 1591200.
XX
SQ   Sequence 634 BP; 201 A; 114 C; 127 G; 192 T; 0 other;
     tgttgctacg accgctcaac cggcaacccg gctaccgtag gtcagcagaa tccaacgacg        60
     gacagcgtgg ctactacagc caagcgatag atgtgtaagg agatgtctga tgaataggtg       120
     gacaaaacaa aacaactagc tattacgaag caaaattgaa cgggttgaat ttatgtgctg       180
     aagtagttta ttagttttac tacactattt gctgtttttt ctttcaaagt ttataccgta       240
     taattcgtaa gttatattga atttattacc aattatgccc aatatctaat cgatctattg       300
     tgaatagtga aatcaggcta atatcgttgg ccacctctaa agttcgagca cagtacacct       360
     actgaactca gtgcaaattg gtaggttaaa gttggaatac tagaagagct gaagtctgat       420
     tatattttct atagccatcc tagcgagcct aagagtggaa tctcgcgcat taagcttgaa       480
     tcagtggata gatcgaaaaa agcgcactat tatgtatgta gaaggtaaaa ttacaagctc       540
     atttcttata ttaatatcac tctaatttct agcttgaagc gttccattaa taaatttgct       600
     ctcaagaagt gcggcgtttt gttatgcagt aaca                                   634
//
ID   BEL-29_AnFu-I repbase;    DNA;    INV; 5848 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5848
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 679-679 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..5737
FT                 /product="BEL-29_AnFu-I_1p"
FT                 /note="PHD zinc finger, DUF1759, zinc finger,
FT                 reverse transcriptase, ribonuclease H, integrase,
FT                 and DUF5641."
FT                 /translation="MSEESRDCNACDQANTVDDMVQCDECDKWYHYACAGV
FT                 SAEIAKRKWNCGCTMGVKSEESEKVCPDPRKGATATVGKAAQSYVREAKHR
FT                 VANSEVLPPSIEPLVVPLGQRRTESRTANRAPSTKASSTASKTSARTALER
FT                 LARTQELERKMAEKEFEMKMARMELEQEKLRIDLEEQMECGSERSSVSSHS
FT                 KTAKWVHSQRCAIVANSVHSEAQHSADERSPITQPIPTPEPLVEAADLQAP
FT                 GNPVSNLNLRNLGAVSQIAARQVYPKKLPIFRGSPRDWPIFISCFNESTAA
FT                 CGFTHRENLMRLEECLQGAAREAVESKLTTPNAVPHIIKTLKRLYGRPALI
FT                 LNELIEKARRTEAPKPENLDSLITYGIAVQHFCDHLVAADLENHLKNPTLL
FT                 EELVEKLPASRRLEWAQYMERSDDPGLKEFSEFMDDLLDKACKVCKFFPKA
FT                 RQMESHQGRLHRSHHIHEGQSGSNENNRYQERPCQICNQHGHRVRTCDTFR
FT                 KMSVPDRLQVVNRHELCNLCLNQHGSRRCFSRFNCGINGCNARHNALLHPG
FT                 KPTIEPSTSAECFNHKTPESGVLYRVVPVTLHHEGNSIETLAFLDEGSSIT
FT                 LMDADLARRLGVRGDPQPLQLRWTAGVIRKENDSERVNVQISARDGSCRYE
FT                 LADAHTMEKLSLPLQELDCKNLTTRFPHFQNLPIQSFLKAEPKLLIGLQHL
FT                 DLMTPLEIHKGQPSEPVAVRSPLGWAVYGPINTGTTNILLHHSEPDRPPES
FT                 DSDSELNSLLKRHFALEEVGISSSSMPEPKEIARAKQMLQNTTVRRGDRFE
FT                 TGLLWKTNEVKFPNSYPMALKRLLSLERKLEKNPDLAKNVHQQVQEYLKMG
FT                 YAHKATQSELDSANPLRIWYLPLNVVSHPRKPNKKRLVWDAAAKVEGVSLN
FT                 SLLLKGPDLLVTLPGVLSKFRERRVAFGGDVEKMFHQIRIRREDTHAQRFL
FT                 FRSDPTKQPSVYIMDVATFGASCSPCSAQYIMHRNAQENALEFPQSAKAIQ
FT                 HKTYMDDYFDSCDTEDEAIKRAQEVKTIHSRGGFNMRNWVSNRQRVLASLG
FT                 ETTNQSLSIVDCANAENQQRVLGMAWDPVEDVFKFTANWREDLVQYVSQGK
FT                 RPTKRIALRIVMSVFDPLGLLAPALIHGRMLIQDLWRADLAWDSEMSDADF
FT                 AKWQRWIELLPIIYQLKIPRCYLGNANPSAYNSLQLHVFTDASELGYGCAA
FT                 YFRVVENGVVHCSLAMARCKVAPLKHLTIPKMELQGALLGARLMATICENH
FT                 TIPIKERFIHTDSEVVLSWIKSPPREFKQFVACRVGEILSLSEPEMWRYVP
FT                 TKENPADCLTKWSRDTQLDVQGRWYKGPSFLYLPSEDWPEQKRVKQTSEER
FT                 RTVLMHLVVNEKPLIDIERFSKWTIALRTIASVYRFVNNCRRKAKGLPIET
FT                 LKATKRQAMQIKRSVKGTQVPLSSEEYRKAETFLLRVAQQDYYGSELKTLC
FT                 NDDEKGIDKRSTLYKLSPLIDEHGLLRIDGRTANAEHVNYDTRYPVILPNQ
FT                 HPITSLIVDSYHRKSGHANRETVVNEIRQRYYISYLRSLVDRRMKSCQHCK
FT                 VHKTKQYHPRMAPLPAERLSTHTHPFSHVGVDYLGPLSIVNGRRKEKRYVA
FT                 VFTCLVTRAVHLEVAYQLSTNSFIMAVRRFVSRRGSPTQIFSDNGTNFVGA
FT                 SNELEREIAAMNYGAADTFTNARTTWSFNPPSAPHMGGVWERMVRSVKDAL
FT                 KALDDGRSLNDEILHTVLVDAENLINSRPLCYMPLTSENEEALTPNHFLLG
FT                 NSSGTKVTLAPCPDVAEALRSSYKRSRVLTNALWDRWLKQYFPSLNLRSKW
FT                 HEDTTSIRIGDLVFITEGNRKDWIRAIVEEVHAGSDGRIRQAVVRTAAGKL
FT                 LKRAVVKLAVLKTEIK"
XX
SQ   Sequence 5848 BP; 1759 A; 1331 C; 1443 G; 1315 T; 0 other;
     ttcaaaaatt gtaaagcaat aatatattgt gctctaaaaa tcgtcttgta tatttcgtgg        60
     aacatttacg atgtcggaag aaagtcgtga ctgcaatgcc tgcgatcagg cgaacaccgt       120
     ggatgatatg gtacagtgcg atgagtgcga taagtggtat cattacgcgt gtgccggcgt       180
     cagtgcagaa atcgcgaaaa ggaagtggaa ctgtggttgt acgatgggtg tgaaaagcga       240
     agaaagtgaa aaagtgtgtc cagatcctag aaaaggagcc accgcgacgg tcgggaaagc       300
     tgctcaaagc tacgttagag aagccaagca tcgcgtagcc aatagcgaag ttctaccgcc       360
     tagcattgag ccactagtag taccactagg acaaagacgc accgaatcgc ggactgctaa       420
     cagggcccca agcaccaaag cctcttccac cgcatcgaaa acgtccgcgc gaacagcgct       480
     cgaacggctc gctaggacgc aagagctaga gcggaaaatg gccgagaaag agttcgagat       540
     gaaaatggcc agaatggagc tcgaacagga aaagctccga attgatttag aagaacaaat       600
     ggagtgtggt tctgaaagat cgagtgttag ttcccattcg aaaacggcta aatgggtgca       660
     tagtcaacgg tgcgcgatag tggcgaacag tgtgcattcg gaagctcaac actcggctga       720
     cgaacgctca cctattacgc agcccattcc gacacccgaa ccactggttg aagcggcaga       780
     cctgcaggca cccggaaacc cggtgagtaa tctgaacctg cgtaatttag gagcagtgag       840
     ccaaatagcc gcgaggcagg tatatccgaa aaagttgccc atcttccgtg gctctcctag       900
     ggattggcct atctttataa gctgctttaa cgaatccact gcggcatgcg gtttcacgca       960
     tagggaaaac ttgatgcggt tggaagaatg tttgcaggga gctgcgcgag aggccgtcga      1020
     atcgaagctc acgactccga atgccgtacc gcacatcata aaaaccttaa agcgtttgta      1080
     cggcagaccg gcactgattt tgaatgagtt gatagaaaag gcgcgtcgta ccgaggcgcc      1140
     caaaccggaa aatcttgact cgctgataac atacggaatt gccgtccagc atttttgtga      1200
     tcatcttgtt gccgccgatc tagaaaacca tttaaaaaat cctacactgc tggaggagtt      1260
     agtagaaaaa ctgccggcct cgcgacgttt agagtgggct cagtacatgg agcgatccga      1320
     tgaccctggt ttaaaagagt tcagtgaatt tatggacgat ctgttggaca aggcctgcaa      1380
     agtgtgcaaa ttcttcccta aggcgaggca gatggaaagt catcaagggc gactgcatcg      1440
     ttcgcatcac atccatgaag gccaatcggg atcgaacgaa aacaaccgct accaggaaag      1500
     gccctgtcaa atatgcaacc aacacgggca tcgagtaaga acatgcgata catttaggaa      1560
     gatgagcgtt ccggatcgtc tgcaggttgt caaccggcat gagctttgca atctatgcct      1620
     aaaccaacac ggctcgcgca gatgcttttc ccggttcaat tgtggtataa atggttgtaa      1680
     tgctcgtcac aacgcactgc ttcatcccgg gaagccaacg attgagcctt ctactagcgc      1740
     agagtgtttc aatcataaaa cacctgaatc gggggtattg tatcgcgttg ttcctgtcac      1800
     actgcatcat gaaggaaata gcattgaaac acttgcgttt ctagacgagg ggtcatccat      1860
     cacactaatg gatgctgatc ttgcccgtcg acttggtgta cgtggcgacc cacaaccgct      1920
     gcagctacgg tggacggccg gtgtcatcag aaaggaaaat gactcggaga gggtgaacgt      1980
     gcagatttca gcgagggacg ggagctgccg ctatgagctt gctgacgctc ataccatgga      2040
     aaagctaagt ttgccgctcc aagaactcga ctgtaaaaac ctaaccacac gctttcctca      2100
     ctttcagaat ctgccaatac agtcgtttct gaaagctgag ccaaagctgt taatcgggct      2160
     gcaacatctg gatctgatga cgccgcttga gatccacaaa gggcagccga gtgaaccagt      2220
     agcagtgaga agtccattgg gttgggccgt gtacggcccc atcaacaccg gtacaaccaa      2280
     catcctgctg catcacagcg agcctgatcg accaccggaa tcggatagtg acagtgaatt      2340
     aaatagctta ttaaaaagac actttgcgtt ggaagaggta ggcatttcca gcagctcgat      2400
     gccagaacca aaagagatag ctagggccaa acaaatgctt caaaacacca ctgtgcgtcg      2460
     tggtgatagg tttgagactg ggttattgtg gaaaacaaat gaggtgaaat ttcccaacag      2520
     ctatcccatg gcgcttaaac gtttactaag cctagaacga aaattagaga agaatccaga      2580
     ccttgccaag aacgttcacc aacaagtaca agagtatctg aaaatgggtt acgcgcataa      2640
     agctacacaa agcgaattag attcggcgaa tcccctacgc atttggtacc ttcccctgaa      2700
     tgtggtatct catccgcgta aaccaaacaa gaagcgttta gtctgggacg cggcggctaa      2760
     agtagaaggc gtttctttaa attccctgtt gctgaaggga cctgatctgt tggtaacgct      2820
     acctggagtg cttagcaagt ttagagagag acgagtggcg tttggagggg atgttgagaa      2880
     aatgttccat caaataagga tacgtagaga agatacccat gctcaaaggt ttctgttccg      2940
     atccgaccct accaagcaac cttcggttta cataatggat gtcgcgactt ttggcgcgtc      3000
     ctgttctcct tgctccgcac aatacataat gcatcgaaat gcacaagaaa acgcccttga      3060
     attcccgcag tcagcaaaag ccattcaaca caaaacatat atggatgatt atttcgatag      3120
     ttgtgacaca gaagatgaag ctatcaaacg cgcacaagaa gtgaaaacaa tccattctcg      3180
     gggcgggttt aacatgcgga actgggttag taatcgccaa agggttttag ccagcttagg      3240
     agaaacaaca aatcagtcat tgagcatcgt tgactgcgcc aatgcagaaa atcaacagcg      3300
     tgtactcggc atggcctggg atccagttga agatgtgttc aagtttaccg caaactggcg      3360
     cgaggattta gtacaatacg tttctcaggg caaacgacca acaaaaagaa tagctcttcg      3420
     tatcgtcatg agtgttttcg atccgctagg attattagcc ccagctctca ttcatggccg      3480
     tatgctcata caagatcttt ggagagcaga tttggcatgg gactcggaaa tgtccgacgc      3540
     agattttgcg aaatggcagc gatggattga actgctaccg ataatctacc aactcaaaat      3600
     accaagatgc tacctcggta atgcaaaccc tagtgcatat aattctttgc aactccacgt      3660
     attcaccgac gcaagtgagc taggctatgg atgcgcggcc tactttcgtg tagtagagaa      3720
     tggagtggta cactgctctc tggctatggc acgttgcaaa gttgccccac tcaagcatct      3780
     cacgattccg aagatggaac tgcaaggagc gctattagga gctagactga tggcaacaat      3840
     ttgtgagaac cacaccattc cgataaaaga aagatttatc cacaccgatt cagaagtagt      3900
     actttcttgg attaagtcgc cgcccagaga atttaagcag tttgttgctt gtcgggttgg      3960
     agagatactt tccttgagcg aaccggaaat gtggagatac gtgcccacaa aagaaaaccc      4020
     agccgactgt ttaaccaagt ggagtagaga cacgcaacta gacgttcaag gcagatggta      4080
     caagggacca tcctttttgt atctcccctc agaagattgg ccagaacaga aacgggttaa      4140
     acagacatca gaagagcgca gaactgttct aatgcatctt gtcgtaaatg aaaaaccctt      4200
     aatagatatc gaacgatttt cgaaatggac aatagcccta cgtacgatag cttcagtgta      4260
     ccgattcgta aataattgtc gtcgcaaggc caaagggctc cccattgaga cgttgaaagc      4320
     cactaaacgc caagccatgc aaattaaacg atcggtcaaa ggaacacaag tccctctaag      4380
     tagcgaagaa taccgcaagg ctgaaacctt tctactccgt gtggctcaac aagactacta      4440
     tggtagcgaa ttaaaaaccc tgtgcaacga cgacgaaaaa ggtatcgata aaagaagcac      4500
     actttacaaa ctgtccccgt tgatagatga gcatggttta ttgcgaattg atggtcgtac      4560
     cgctaacgct gaacatgtaa actatgacac acgatatcca gtgatacttc cgaatcagca      4620
     tccaataacc agtttgatag tagacagcta ccatagaaaa tcgggtcatg ccaatcgcga      4680
     aacggtcgtg aatgagattc gccagagata ttacatatct tatttacgat cgctagttga      4740
     tagaaggatg aaaagctgcc aacactgcaa agtacacaaa accaaacagt atcatcctcg      4800
     aatggcacca ctaccggcgg aacgactcag tactcacact cacccgttta gccacgtagg      4860
     cgtagattac ctgggcccgc tcagcatagt gaatggtaga cgaaaggaga agagatatgt      4920
     ggcagtattc acatgcctgg tcactagagc agtacactta gaagtcgcgt atcaactgtc      4980
     tactaattca ttcatcatgg cagtaaggag gttcgtgtca cggagaggtt caccaactca      5040
     aatattctcc gataatggta cgaattttgt gggtgcaagc aatgagctgg aacgagaaat      5100
     cgccgcaatg aactacggag ctgccgatac ttttaccaac gcccgtacca cttggtcgtt      5160
     taacccacca tcagcaccgc acatgggggg tgtatgggag cgaatggtac gaagtgtcaa      5220
     ggacgctcta aaggcgcttg atgacgggcg gagtctgaac gatgagatac tacatacggt      5280
     gctggtggat gctgagaatc tcattaattc gcgtccacta tgttatatgc cactaacatc      5340
     agaaaacgaa gaagctctca ccccgaacca tttccttcta ggcaattctt ccggaacgaa      5400
     agtaactctt gcaccttgtc cagacgtggc agaggcgttg cgcagtagct acaaaagaag      5460
     ccgtgtgtta acaaatgccc tctgggatcg atggcttaaa caatactttc ccagtctcaa      5520
     cctacgaagc aagtggcatg aagatacgac ttcgattcgc attggtgatt tggtgtttat      5580
     tacggagggc aacaggaagg actggatcag agcgatagta gaggaagtac acgcgggtag      5640
     cgatggtcga atacgacaag ctgtagtgcg tacagccgca ggcaaacttc taaaaagagc      5700
     agtagtcaag ctagcagtat tgaaaactga aattaagtaa tagattaggg ataaacgccg      5760
     acaaatactt aaaatagaaa tgcgtacctt aagtaatcgt gctacttgta agcaaattct      5820
     tacaggcaat agaatttacg gggtggag                                         5848
//
ID   BEL-29_AnFu-LTR repbase;    DNA;    INV; 448 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-448
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 732-732 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 448 BP; 145 A; 86 C; 103 G; 114 T; 0 other;
     tgttggcacg attcactgtc ttgtaatacg cgtgattaca gaccgcatgt aacgaatgat        60
     cgtaaacaaa ccaacgtgac attcgaatcg gttcgaacta attgacatct agagttgctg       120
     aatgttcact tgggttgacg gaccgcacac taggtggcgc taaatgctag gattaggttc       180
     gggaaaaggt tcgttagggt catcgttcta ccttcggcga acaaccaaaa ttagtatgcc       240
     caaataaggc aaaaacattt atgcgcacgg attatgtgtg tcaataggtc aagcataggg       300
     cagtagcaat tgagagacgg tcagagcaag accaattttt gaacctcgcc cacagtaacg       360
     gaaaaataaa attgttcagt aaaaaaccat aagggaagtt cgaaaattct tgctaaagtc       420
     gattgagaaa gtttcgcttt tctcaaca                                          448
//
ID   BEL-29_CQ-I repbase;    DNA;    INV; 5640 BP.
XX
AC   AAWU01003415;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_CQ_;
KW   BEL-29_CQ-LTR; BEL-29_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5640
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 211-211 (2011).
XX
DR   Genome; AAWU01003415; Positions    9074    3435.
XX
CC   Positions [4669-5250] - Integrase core
CC   'CATTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           369..4400
FT                 /product="BEL-29_CQ-I_2p"
FT                 /translation="MGPKIPRTPLKKEGEEEEDLENLVFLREEQTEVIDRL
FT                 KATIDATLVEERTEAAAKVHRWRLDTCFAEFAAIKERIYRADPKKRNDHKK
FT                 VVVEFEALFDQLAMTLGGWNAGAAPAASSALVERHDRPIVIQQPLPRVFPS
FT                 FDGKYENWEKFKVMFVDVVDKTNESARMKLYHLEKALVGDAAGFIDAKTIQ
FT                 DGNYAHAWKQLTDHYEDKRRMVDLHIGGLLSVQKLACEGHLELRALVDSVV
FT                 GNVENLKYLGQAFTGVSEQIVVYLLGHALDDTTKKIWESTVARGELPKYED
FT                 MIKTLKDRISVLERCETSSDSIKKQQPRTSSKPSTGKQPFQRANAATTPAQ
FT                 PEFQCGVCGEGHLTFRCANLTGLTVAQRREKVRNKNLCFNCLRSGHSWKRC
FT                 SSKNSCGKCQQRHHSLLHDEAKAEPVPKSTPQQSAAPPKNPTPVVQPAGQQ
FT                 APPTTEATCNHTQTTKTVMLLTAVVHLSDTQNRPVPCRVLLDNGSQVNFIS
FT                 ESMAKRINIQRVATTVPICGIGAVKTYAREAVTVELQSRYNSFAVNVECLI
FT                 VPKVTGLIPSSPVNIADWPIPECIQLADPDFQTPDRIDLLLGVAMFFRLLK
FT                 SGHIELGNNLPDLRETYLGWVVAGEVGDTVPGPQYSHTATLEDISEAIQRF
FT                 WQVEEIESVTPITTEQEDCETFFRSTHKRDPTGRYEVRLPFRPVVARLDDN
FT                 RSLALRRFLSLEKRLNRDPDLRKQYGEFIQEYQSLGHCKTVDETVDSPKLG
FT                 RYYLPHHAILRPSSSTTKLRVVFDASAKMSPSATSLNDALQIGGNVQNDLF
FT                 SILLAFRKHPVVFTADISKMYRQIRVASADTSYQRIFWRNDPSDFVQVLEL
FT                 TTVTYGTAAAPFLATRCLVQLCEDEGENFPLAASIVRNACYVDDILAGADT
FT                 PEEAIECLRQLQGLLGRGGFPIHKWSSNTPAVMDQIPESDREKLIDLDGLS
FT                 GGVVKALGLYWCPGDDDFRFTATQSDAEATKRRVLSEIGKFFDLLGLLSPV
FT                 IIMAKMLMQKVWNEGLTWDVLLNGELGTTWQQFQTALPDVREIRIPRYVIG
FT                 AGSVGLELHGYSDASKLAYGAAIYIRSLLPNEKTEMRLLCSKSKVAPNKQL
FT                 DIHRLELLGCRLLSRLVVKVIAALKLPFRAVVLWSDSQVVLAWLKKSLDLL
FT                 QTFVRNRVAEILQETAGFIWNYVRTKDNPADLISRGMFPAPLMKCKKWWEG
FT                 PSYMAPVVYPVEPAREVPDEELPELRKVKMVAMLAFNSYELPIFETCSSFR
FT                 KLQRVMAYVVRFVNNCKQKNPADRVHRRHPSIPELRAALNLIVKVVHARRA
FT                 VQGDTAGGRERFGRKAPVSGTFLGQRSSASRR"
FT   CDS           4642..5640
FT                 /product="BEL-29_CQ-I_1p"
FT                 /translation="MGMLPSSRVSQAFPFEEVGVDYAGPVFVKVGLRKPQM
FT                 VKAYIAVFVCMTTKAVHLELVSDLTTEAFLAALQRFVSRRGVPRQIHSDNG
FT                 TNFKGAKTELHELYLLFKQRAFNDQIETYCQPKEIAWSFIPPGAPNFGGLW
FT                 EAAVKSTKYHLKRILKNAQLTFEQYATVLAEVEAVLNSRPLFAMSSDPSDP
FT                 EILTPGHFLIARPLTAIPEPNYDGIPTNRLSKWQHLQRLREHFWKVWKNEY
FT                 LTSLQPRGKNLKEKPNVRPGMVVLLEDKEAAPLQWKLGVVTNTYPGPDGLV
FT                 RTADVRVGGTTVRRPITKLAILPILDNEPTPAGSAPSPGGG"
XX
SQ   Sequence 5640 BP; 1309 A; 1654 C; 1632 G; 1045 T; 0 other;
     ttggtccttc aacccggatt ggaccccggc gtggacgctg gaaagaagac tggtgaagtg        60
     aggaggcaaa ccggcctcag cgcgaacagt taccgagtgt ctcgggaagc aaaccggctt       120
     ccgcgtgaaa acaaaagaac attcgcgggg tgcaaaccgg cttccgccgc gagtgtgcaa       180
     ggcaaaccgg ccttggcaca cgaaccgttc cgtggaacca tcgggggagg caaaccggcc       240
     tcagaccgac tgcggaagaa caaaaagtgc cacccagcgt ggaaaaaagt gaaacaaaca       300
     cgaaagaaca aagtgaaagt accacgtgct gttcctaacc tcaaaagtgt gcaaaagtga       360
     caaaaaaaat gggccccaaa ataccacgca caccgctcaa aaaggaaggc gaggaggaag       420
     aagacctgga gaacctggtt ttcctccggg aagagcagac ggaggtgatt gatcggctga       480
     aggcaacgat cgacgcgact ctcgtcgagg aacgcactga ggccgctgcg aaggttcacc       540
     gatggaggtt ggacacgtgc ttcgccgagt tcgccgccat caaggaacgc atctacaggg       600
     ctgatccgaa gaagcggaac gaccacaaga aggtggtcgt ggagttcgag gccttgttcg       660
     accaactggc catgacgctc ggaggttgga acgccggtgc cgctccagct gcatcgtccg       720
     ccctcgttga acgacacgac cggcccatcg tgatccagca acctcttcca cgtgttttcc       780
     catccttcga tgggaagtac gagaactggg agaagttcaa ggtgatgttc gtcgacgtcg       840
     tggacaagac gaacgagtcg gcgcgcatga agctgtacca cctcgagaag gctttggtcg       900
     gcgacgcggc cgggtttatc gacgccaaga ccatccagga tgggaactac gcccatgcct       960
     ggaagcagct gacggatcac tacgaggaca agcgccggat ggtagacctt cacatcggag      1020
     gtctactgag tgtgcagaag ctggcctgcg agggccacct ggaacttcgg gctttggtgg      1080
     attccgtcgt tgggaacgtc gagaacctga agtacctcgg ccaagcgttc accggcgtgt      1140
     cggagcagat tgtcgtctat ctcctgggcc acgccctaga cgacaccacc aagaagatct      1200
     gggagtctac agtcgcgaga ggtgaattgc ccaagtacga ggacatgatc aaaacgctca      1260
     aagatcgtat ctcggttctt gaacggtgcg agaccagttc cgactccatc aagaagcagc      1320
     agccacgaac aagttccaaa ccatcgactg gcaagcagcc gttccagagg gccaacgcgg      1380
     cgaccactcc ggcccaaccg gagttccagt gtggagtctg cggagaaggc cacctcacct      1440
     tccgatgcgc caacctcact ggcctaacgg tggcccagcg cagagagaag gtccggaaca      1500
     agaacctgtg cttcaactgt ttgcgcagtg gccacagctg gaagaggtgc tcgtcgaaga      1560
     actcgtgtgg caagtgccaa caacgccacc attctctgct gcacgatgaa gcgaaggctg      1620
     aacccgtgcc gaagtccaca ccgcagcaga gtgctgcccc accaaagaac ccgacaccag      1680
     tggtccaacc cgctggccaa caggcgccgc cgacgaccga ggcgacgtgc aaccacaccc      1740
     agacgacgaa aaccgtcatg ctcctgacgg cggtggtcca cctgagcgac acccagaacc      1800
     gacctgtgcc gtgccgagtc ctgctggaca acggttcgca ggtcaacttt atttcggagt      1860
     ccatggcaaa acgcatcaac atacagagag tggctacaac cgtcccaatt tgcggcatcg      1920
     gcgccgtgaa gacgtacgcc agggaagcgg tcacagtcga gctccagtcc cggtacaaca      1980
     gcttcgcggt gaacgttgag tgcctgatcg tgcccaaggt gactggactg attccgtcgt      2040
     cgccggtaaa catcgctgac tggccgattc cggagtgtat ccagctggcc gatcccgact      2100
     tccagactcc ggaccgcatc gacttgctgc tcggagtggc catgttcttc cggctcctga      2160
     aaagtggaca cattgagctg gggaacaacc tgccggatct acgcgagacc tacctgggct      2220
     gggtcgtcgc aggagaggtc ggggacaccg tccctggtcc acagtatagc cacaccgcaa      2280
     cgctggagga catcagcgag gcgattcaac gcttctggca ggtcgaagag atcgaatctg      2340
     ttacgcctat caccactgaa caggaagatt gcgagacctt tttccgctca acccacaagc      2400
     gggaccctac cggtcggtac gaggttcgct tgccgttccg ccccgtcgtc gccagactcg      2460
     atgacaaccg cagcctcgcc ctgcggcgtt tcttgtcgct ggagaagcga ctcaaccgag      2520
     acccggacct gcggaaacaa tacggtgagt tcatccaaga ataccaatcc ctggggcact      2580
     gcaaaacggt tgacgaaact gttgactcac cgaaacttgg ccgctactac ttgccccacc      2640
     atgccattct ccgcccctcg agctcaacga ccaagttgag ggtagttttc gatgcctcgg      2700
     ccaagatgtc tccctctgcc acctccctga acgacgcgct gcagatcggg ggaaacgttc      2760
     aaaacgatct cttctcgatt ctgttggcct tccgcaaaca ccctgtcgtc ttcaccgcgg      2820
     acatctcaaa gatgtaccgc caaatccgag tcgcttcagc tgacaccagc taccagcgga      2880
     tcttctggag gaacgatccg tccgacttcg tccaggtcct tgaactcaca accgtgactt      2940
     acgggacagc ggcggctcct tttctcgcga cgaggtgtct ggtccaactg tgtgaagacg      3000
     agggtgaaaa tttcccgttg gcagccagca ttgttcgcaa cgcctgctac gtcgatgaca      3060
     tattggcagg tgctgacaca cccgaggagg cgatcgaatg tttgcgacaa cttcaaggct      3120
     tgctaggtcg tggtggattc cccatccaca aatggagctc gaacacgccg gcagtgatgg      3180
     accagattcc agaaagtgac cgggagaagc tgatcgacct ggacgggcta tccggtggcg      3240
     tggtcaaggc tctgggactg tactggtgtc ctggagatga tgatttccgg ttcaccgcaa      3300
     ctcaatccga cgccgaggcc accaagcggc gtgtactttc cgagattggg aagttcttcg      3360
     acctcctggg actcctgtcg ccagtcatca tcatggccaa gatgctgatg cagaaggtgt      3420
     ggaacgaagg cctgacgtgg gacgtgctac tcaacggaga actgggcacc acgtggcagc      3480
     agtttcaaac cgcactaccg gacgtgcggg aaattcgtat ccctcggtac gtaatcggcg      3540
     ccggcagcgt tggccttgag ctccacggct acagcgacgc ctcgaagctg gcatacggtg      3600
     cggcgatcta catccgaagc cttctaccga acgaaaagac cgagatgcgg ctgctctgca      3660
     gcaaatccaa agtggcaccc aacaagcagc tcgacatcca ccgtctggaa ctgctcggct      3720
     gcagactgct gtcgcggttg gtggtcaagg tcatcgctgc gctcaagctt ccgttccgcg      3780
     ctgtggtgct ttggtcggac agtcaggtgg tgctggcctg gctcaagaaa tcactagatc      3840
     tgctccaaac tttcgtgcgc aaccgcgtcg cagaaatcct ccaagaaacg gccggtttca      3900
     tctggaacta cgtccgcacc aaggacaacc cggccgacct gatctcgcgc ggaatgttcc      3960
     cggctccgtt gatgaagtgc aagaagtggt gggaaggacc gtcatacatg gcacccgtcg      4020
     tgtaccccgt cgaacctgca agagaagtgc cagatgaaga actgcctgaa ttgaggaagg      4080
     tcaaaatggt cgcgatgctt gccttcaact cctacgagct gccaatcttc gagacgtgca      4140
     gttctttccg gaagctgcag cgcgtgatgg cgtacgtcgt gcgctttgtg aacaactgca      4200
     agcaaaagaa cccggcggac cgagttcacc gacgccaccc gtccattccg gagctgcggg      4260
     cggcgcttaa cttgatcgtg aaggtggtgc acgcacgacg tgctgtccaa ggagatacag      4320
     caggtggccg agaacgattc ggccggaaag ctccagtgtc tggtaccttt cttggacaac      4380
     ggtcttctgc gagtaggagg tagactgcag caatcggagc tgccgttcgg gacgaaacac      4440
     cagctgattc taccgaagca tcgggtcacg gacttgatca tccgagctta ccacgaggag      4500
     cacctgcacg cggggccgtc ggccttgctt gccatcttga gaaggcaatt ctggctgctc      4560
     gacggacggt cgacagtccg gaacgtcacg agaagttgtg tgacctgctt tcacgtgaag      4620
     ccgcgcaatt cgagtcagct gatggggatg ctgccgtcca gccgggtgtc gcaagcgttt      4680
     ccgttcgagg aggtcggcgt ggactacgct ggacccgtct tcgtgaaagt tggactccgg      4740
     aagccgcaga tggtcaaggc gtacattgcg gtcttcgtgt gtatgacgac aaaggcggta      4800
     cacctggagc tcgtgtccga tctgacgaca gaagcgttct tggccgctct ccaacgtttt      4860
     gtcagccgac gcggcgtgcc tcgacagatc cactccgata acggcacaaa tttcaagggg      4920
     gccaagaccg agctgcacga gctgtacctc ctgttcaagc agcgtgcctt caacgaccag      4980
     atcgaaacgt actgccagcc aaaggagatt gcctggtcgt tcatccctcc cggtgcaccg      5040
     aacttcgggg ggctttggga ggcggctgta aaaagcacca aatatcatct caagcggatt      5100
     ttgaaaaatg ctcaactcac ctttgagcag tacgccaccg tgctggccga ggttgaagcc      5160
     gtgctcaact cccggccgct gttcgcgatg tcgtccgacc cctcggatcc ggagatcctg      5220
     acgccgggac atttcctgat cgcgcggccg ctcacggcca tccctgagcc aaactacgac      5280
     ggaatcccga cgaaccggct gtccaagtgg cagcatcttc aacgtcttcg agagcacttc      5340
     tggaaggtct ggaagaacga atatctcacc agtttgcagc caaggggaaa gaacctgaaa      5400
     gagaaaccaa acgtccgtcc gggaatggtg gttctactgg aggacaagga agcggcgccg      5460
     ctgcagtgga agctgggagt cgtaacgaac acctacccgg ggcccgatgg cctcgtccga      5520
     actgctgacg tgagagtcgg cggcactacg gttcggcggc caatcaccaa gctggccatc      5580
     ctcccgatcc tggacaacga acctactcct gctgggtctg cccccagccc ggggggagga      5640
//
ID   BEL-29_CQ-LTR repbase;    DNA;    INV; 366 BP.
XX
AC   AAWU01003415;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_CQ_;
KW   BEL-29_CQ-I; BEL-29_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-366
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 212-212 (2011).
XX
DR   Genome; AAWU01003415; Positions    3434    3069.
XX
SQ   Sequence 366 BP; 95 A; 91 C; 94 G; 86 T; 0 other;
     tgttgagtct tcaacgtctg gcagtaaatt ggcaacactt gctgtcaccg cagccagttt        60
     gcttagatca acgaaccacc ctgtaaggaa aaacgcaacc gttgctgcga tcggcgacgg       120
     aagaggaagg gagaaacgcg cgaaaccgag agttggagaa gcagcaactt ggctcgggat       180
     cagtctcgcg ccaccagtcg ttggaagcag ttctaaatcg cttgttgaac taaaataaag       240
     ttagtgatta gtattagaac cgcgtgtgta ggtttctttc caacgcccac tgccagttca       300
     agtccaccat cttttcggaa acccaattcc gccgtttttt cgtggggcca gtctgtggcc       360
     cgaaca                                                                  366
//
ID   BEL-29_DTa-I repbase;    DNA;    INV; 7189 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7189
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 98% identity to the other LTR.
XX
SQ   Sequence 7189 BP; 2134 A; 1842 C; 1298 G; 1915 T; 0 other;
     tggtccttcg acgtcaacag aactggacat ctatctggag agttttttgt gctggcccga        60
     gagcgaaaga agtggacatc tcttctggat tttttctttg ctgcccccag agcgtgtgaa       120
     aaaaggtaat cctcgtggct gaccctacag acacgttaaa ctcaatcact ttagctcttt       180
     tttcacaaat aaacggaaac ccacacatac aaacatacac atccagtgaa ttatctcgga       240
     aatcattctt taaccctttt ttgcacaaca aatgcagtcc cacacataca taaatacata       300
     ctcagtgcaa ttctcttaat tatattggct ttttcacgaa taaatgcaga cccatacgta       360
     catacatacc ccagtgaatg tgctgtgcaa ataactacat acatacatac atcttaataa       420
     gaactgtgtt tttctttctc gaagaaaccg cacgcacgtg cataagtact tacataaatc       480
     gaagctagtg cgagtgcata ccattacaca tatgtacgtc ggtccgctta tatactaaat       540
     tttttgcacg ttttacatac acatacatcg aagctagtgc gagtgcgtac cattacacat       600
     atgtacgtcg gtccgcttat atactaaatt ttttgcacgt tttacataca cacatacatc       660
     gaagttagtg cgagtgcgta ccataacaca tatgtacgtc ggtccgctta tatactaaat       720
     gttttgcacg ttttacatac acatacatcg aagctagtgc gagtgcgtac tttacacata       780
     tgtaagtcga tctgctaatg cacaaatttt ggcacacgtg cacacatatc tccgctgttg       840
     catatgtact tttttaaatt agtgtcggtc cgctgaagcg ccaaaacata aaccgcagtt       900
     gcaaaaataa aaaacttaat tttgtatata aactttacaa acacaaggag acataaccct       960
     actttgtcct ttctttggct tatatacacc ccatttatac actttacaaa cacaaggaga      1020
     cataacccta ctttgtcttt tctttggctt atatacaccc catttataca cctttacata      1080
     cacaaggaga cataacccta ctttgtcctt tctttggctt atatacaccc catttataca      1140
     cctttacata cacaaggaga cataacccta ctttgtcttt tctttggttt atatacaccc      1200
     catttattca cctttacata cacaaggaga cataacccta ccttgtcttt tctttggctt      1260
     atatacaccc catttataca cctttacata cacaaggaga cataacccta ctttgtcttt      1320
     ttcttttggc ttacatgcac cccacgtatt cacctcttac aacacaagga gacataaccc      1380
     tactttgtct ttactgtggc ttataggcac cccacttatt ttaaactcta caagcacacg      1440
     gcgacataac cctactttgt ctgctaggag ctaaaatcaa cctttttttt ataaatacac      1500
     cccagatcac ttcccaaact gacgaagtaa aataaccaca ctctttctgg tatcaccctc      1560
     tggaactcta tacaattata attaccatat tacaactatt gagtatagta acgcttcaac      1620
     tccctgtcaa aacgatcaga ttctggttgt tagcacataa ctttcatatc cggttttccc      1680
     tttgggttga gttcaacaaa attcgttgta tcccatccga ttttttcctc atttttcaca      1740
     atgtctgccc aacgacgttt tgacttttcc acgagccgag tgcttcagtt ttgtgctaaa      1800
     tctcccacct tcacaataga cacctgggaa tccctcgtcg ctgagagatt acgtcgtttg      1860
     gacacgcttt ttgctgaagc agatcaagat tttcgaagct tgatggtatc cactgacgaa      1920
     gagacctctg ctgaaaggga agagcaaatc agttcgacct tttctacatg cgaagacgag      1980
     ttttatagag ttaaaactct tttaaaagat ctatgtcgtg gaaaacaaga agagcttcaa      2040
     gttaatctaa gcggggaccc aaactcgtca gctcttgccg acacatcgat gaattcatgc      2100
     catattaaag tccctccctg cgacaccgaa ccttttagtg gttgctacga agattggccc      2160
     gcttttaggg acatgtttac tgctgtatat agtaatcatc ctgctcaaaa attgtatcac      2220
     ttaagaaata aaacccgagg agaagctggc actatcgtca aacagtttct actgtgcgat      2280
     cagaacttcg ctcccgcgtg ggacgccttg tccaagcgtt tcgaaaacaa acgtttgcta      2340
     gtagacacgc agttaaaaag gctcttttcc atggataagg tttataagga agatgacgag      2400
     gggatcaaga gcattctgtc cacagtgaca cactgtcttt cagtactaaa ggctcaaaca      2460
     gttaaaactg aaaattggga ccccatgctg gttcatctat gctcatcgaa attacccgac      2520
     cagacgctct ccctttggga acaatctctc gactctcgaa aggatttgcc gacttggcaa      2580
     caattgaatg attttctagt gattcgagta gaggtactag aacgtctttc ttccattaag      2640
     cctgcgaaat ctttttacca gtcacccctc aaatcatcca acaaaactag tgcagtagca      2700
     cacaccacga tggcagcaga tccatgcaaa cattgtaagg aatcacatca ccttcgacaa      2760
     tgcagtcaat ttagaaaact tagcccgaac gatcgtttcc aatttgcgaa gtcggctaat      2820
     ctttgtatta actgtctctc atatagtcac actgcaaagg aatgtaaaag tgggaaaagt      2880
     tgcaatactt gccacaaaaa ccaccactcc ttattgcatt tttctccgag accaagacaa      2940
     agcccagaat tagctcaacc atccaatgtt gtagcacatc attccactca aaatcggaat      3000
     gttattctcc caacggcgtt agtccgtgtc cttcataaag gagaactgtt ctgcctccga      3060
     gccctgatcg atcaagggtc ccagcgcacc tttatcacag caaagtcaca acgcagactt      3120
     aagctgcgcg ctcttaaaca ctacacaagc atctccggaa tgggaggaaa acttgttaac      3180
     tcgtcctcta aaatatgcca tctggtactc acagacaacc tcagaactaa agaaatttca      3240
     gtagatgcga ttgtactcga gaagctcaca aatctgatcc cggcaataag ttcccccaga      3300
     cccgcagata gctgtctcat taatctcgac ttagctgacc caaatttctc aaccgctgct      3360
     gagattgatc tcataattgg gagtgatatt gcccctaaaa tctttctaga gggcattcga      3420
     actcccctct ctcaaaacct actcgctcag tgcaccatat tcggatggat tgtaagtggc      3480
     tctttaagcg aggctactac atccaacgtg tgcacatttt ccacttgcgt agaggataat      3540
     tccgaaaacc tcgggaatct ccttcaaaaa ttttgggaag tggaagagat atccgtccca      3600
     aaacaaactt ctcactcgga ccaaatttgc gaaaaattat tcgccgagac gacccaacga      3660
     ctccctgatg gacgctatat ggtccgtctc ccctttaaat ccgagttccc caactcacaa      3720
     cacttgggtt gctctagggt cattgctaga tctcaatatc atcgcatgaa aaacactcta      3780
     tccaaaaatg agtctcttaa atcgcaatat aataaagtac tgtcagaata tattaatctt      3840
     ggtcacatgt cagagactca gcccttcgaa attgtgcgga agaatcaata tttttcatac      3900
     tacttgccac accatggagt agtaaagccc tctagcacga caactaagct tagagtcgta      3960
     tttaacgcat ctagatccac atcttcgggc agatcgctta acgatgtttt acacaaaggc      4020
     cctactctac aggccgattt acttggaatc ctactcaatt ggcgattata caagtatgtg      4080
     ttcaacgggg acattgaaaa gatgtaccgc caaattcttg tccatcccga cgatagaccc      4140
     ttgcatagtt ttccaaccag agggcagtgt tttttttaaa gatttcgagc tcaacaccgt      4200
     cacttttgga gttaattgtg ccccatatct ggctatcaga acccttcaac agttagccaa      4260
     agactgtgaa cacgagtttc cattagcctc caaaatttta ctctccgaaa catatgtgga      4320
     tgacatactt tccggcgacc atacactcga tggtgccaag aaagcccaat ctgaaattcg      4380
     aatggcattg caatccgcgg gttctgctca agaaaaatac cgcaaatcac gacgcgttgc      4440
     taagtgaaat ccctcgagat cacttattca atgacaattt tatcaaagtt tccgactcta      4500
     gcgttatcca cacattgggc attaagtgga atgcaaatga tgattgtttc tcatacgaca      4560
     tcaacccgcc taattcagcc actcagatat ctaaacgtag cattttatcc tacgcttcga      4620
     cgttgttcga cccggcaggc tggctaacgc caataataat tcaagcaaag ctactgcttc      4680
     aatccctatg gctggagaat cacggctggg atgataatgt ctcccattta cttctggcaa      4740
     agagtaaagt agccccctta aaaaccctaa gcttaccacg cctcgaacta tgtggcgcag      4800
     aactgcttgc taaattagca aaacacgcgc ttcacgagac acgtcttgaa aaactgagtc      4860
     ctctgttatg gtgtgactct gaaatagttc ttgcctggtt agaaaaacct cctcatacgt      4920
     ggaaaacata tgtcgcaaac cgcacagcaa gcattcacgc agaaagtccc aatgcgacct      4980
     ggagtcatgt caggtcaaag gacaaccctg cagatctggg aacgcgagga tgctcaacaa      5040
     atgagctaaa agaatccaca ctttggtgga atggtccaca atggctatcc ttaccaaagg      5100
     aaaaatggcc aatctcgtgc aaaccagaat gttctccccc agaatcgcga gtcctagttc      5160
     attgctgtac tcagtcggac gacgaggatc aatgtcaaaa ttcacctcgt actctcgagc      5220
     cctaagagcc acagctcgca ttttaagttg gcacccacgg cataaacgca ctgctgtcaa      5280
     catgaatgca cttactaaac tagctaaaac tcgacttgtt accgcagctc agaaaatgca      5340
     ttacccagag gaatacactc gattattaaa aaacaaggtg atttcctcca aaagctcgct      5400
     cagccccctt aacccattta ttgacaacga tggccaaatt cgcgtcaaca gccgcctagt      5460
     caactcaaat ctgccatata acgaaagcca cccagtgctc ttacctccaa actctgcact      5520
     atgcattcta ttcataaaat ttgtacacca aatcttactc cacgcagaaa acagactcat      5580
     gctccgatgc attcgtcaag aattctatat tcctcgcttg acaaacaagg tcaaaaactg      5640
     catccgaaga tgtgttacct gcacccgatt caagcagaaa actacgaatc agataatggc      5700
     agccctccct tctaatcgag tcacattcac tccggcattc acaattactg gtgttgattt      5760
     tgcaggccct tttgacttaa aaacgtcagc gattcgttca agccacattc tcaagggtta      5820
     cgtagcggtt ttcgtatgct tttccaccaa agccgttcat ctggaatcgg tgtccgaact      5880
     gtccacaaag gcttttcttg cgactttcga acgctttgtt agtcgcaggg gacttcccaa      5940
     caagatggtt tccgataatg ggaaaaattt ccttggagcc agccgagaac tcacgaagac      6000
     atgggaaacc tttctcaaaa atgctaacga acacataact gcaattttta gtagccgctc      6060
     gttcgaatgg caattcatac ctcctcactc tccgcacatg ggtggtcttt gggaagcggc      6120
     tgtaaaatca tttaaaaaaa cacttcaaac gcgtagcagg atcccacgcc tttactttcg      6180
     aagagttttc tactttactc gcaaaaatag aagcggttct caactctaga ccgctgtcaa      6240
     ctctgaaatc agatgctgac caactactcc ctttaacccc aggtcatttt atccgaggag      6300
     ccctcctaat tgtgtttccc gacaatccgg gcgagagcct cggcctacat aaccgctggc      6360
     agaaactcaa aataatgcat caagaactga gtagacgttg gagggatgaa tatctctcag      6420
     aactgcaccg tcgctataaa tggaagtatc cttctcgaaa cttagctctc gacgacatcg      6480
     tcattattaa ggatgatgct tgcccaccaa cagagtggcg tctagggaga gttatcaagg      6540
     ttcatccggg acccgataat caaattcgcg tcgtagattt gcaaacccgc acgggtgaaa      6600
     taactcgacc ggtcgtcaaa cttatcgtcc tcgacaccaa acccgattcc tcccagtaat      6660
     cacacacaca taacacaagt cccaacacca cggctaacat atcatatcgt ttctcaatca      6720
     gtcgcttata atgttttttc ttaccagatg ggacatcaat gcaaaatgtg ccgccaaaag      6780
     cacccgctgc gtttctgcga aaagtttcta aaacttgact ttatcgctaa acgacgggct      6840
     gtaagacgtt tgcactattg cgtcaactgc ttggcatcct ctcacacact ccaacagtgc      6900
     cgatccaagg acatctgcca tgtgtgcgga gaactgcacc acacgatcct gcatggacca      6960
     gccgaggaga cgaaaggagg aaaggagtca gccaagcgca gcaggcctga ccagcaggac      7020
     accaaggagc gagaaagccg caatcgacag cgaagcagtg gaaaacggag ttaccatcgc      7080
     agtcccagca acaagccttc gccgctaggc caactgaagg aagccattcg ctgcctaacg      7140
     agactgcagt ccattatcgc caattgattg cctggtaagg cgggcagca                  7189
//
ID   BEL-29_DTa-LTR repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-389
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 98% identical to the other LTR.
XX
SQ   Sequence 389 BP; 148 A; 78 C; 55 G; 108 T; 0 other;
     tgttggagta tcactccaac aacaacgaat ttaaatcatc ctgtattata ttaagactaa        60
     aaactgaaat acttatacct aatttacacc atgaaaatcc ttataattag ttaagacaaa       120
     aactgaagac ttatacctag tttacacctt aaaaagaaac gaacgtgaaa tggaaacata       180
     acataacttt aagtcttcca aaaatactag attgtacgat tcactaacgc ataagaatgc       240
     ggtcacataa aaagccagct ttttccggcg gccattaaaa ccgacacttg tgcctaaacc       300
     tcgaaccgac gtgcatgtgt tttttctata ttatctcggc tttgtaataa agaacgtgga       360
     aataaaaggc aatcgcgccc ttatataca                                         389
//
ID   BEL-29_SiCu-I repbase;    DNA;    INV; 5256 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5256
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5003-5003 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. An insertion of Penelope-1_SiCu is
CC   removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..1191
FT                 /product="BEL-29_SiCu-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MAAKPWTVDELKEGINEKRELIEITNRLREQAADIIR
FT                 PFVGRPANSVNEEQQKKLEAAHAEYQNAQKVIEEELRILNEMEEELNARTS
FT                 SKRKSGYAESTSTTQSINSRIRKLEAKLNEDLVQLRHIYQRGKANIEDQLE
FT                 DLTSKLTTLMSESEKAELLAQKSRLEKNLSRAHRDYTTDVEMLKEEAEARK
FT                 EVLLAEQEEEEEVGNAEVASVQDSLPIVKKWIHEQQRYVPYQPPNSCRPTV
FT                 NISGPGLPENDGQKCPISQQRQSTARQPRQKCEIVSTEVPADKDTMLMTLM
FT                 QQQLKFMQRGRGDKFLPEFDGDPAKWGIFRSAYERAQDKFGFDDAENLTRL
FT                 QRALKGRARDAVEHLMTNEGNMEEIWKTYIFCQI"
FT   CDS           1139..5254
FT                 /product="BEL-29_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="LMKATWKKFGRLIFSVRFKNAEKVSKENKEESKSDEE
FT                 GSVGVAVSLIKGTDGPLPIVPVRVKGPDGIRVVYAMLDSGASRTLISNNLA
FT                 SELDLQGPTLEYKFRTMAGEIVKCKKSKKVNLEISGRYKXAKMYPLTDVVT
FT                 VDKIGVAPYSIDVDEAKLKWPHLRRYKGPSLSKAVVDIIIGSDHGFLAMHR
FT                 DLLYTSPDQPVAMRTVLGWIMVGKLGKSSHHGSGFHVGGVSDDTLDKLIIE
FT                 SFRLNDYAVRDGESLTMSRQDERALEILENTTRQLESGRWETGLLWKNQDP
FT                 FPDNTYDEALSRLIKTERRMEKSPEFAEIYRKKIKEYLDKKYIRKLPEGEA
FT                 AATTERTWYIPHFGVVNPNKPGKFRLVFDCAADSKGQCLNYFLLTGPDLIR
FT                 PLPAILWNFCRHQVVICGDIEDMFHRVFIRKEDLTAQRFLWRDGNMKRDPD
FT                 IYEMQVMLFGATSSPASAIFVKDKNAKRFIDDYPEAVNSILNDMYVDDNLT
FT                 GSDTVEGAIRLRKEITGINGRGGFIIKKWISNSLEVMQSIPESLRLSGNKP
FT                 LFQEGHTERVLGLYWDPNDDCFTFRINFSKVKPEVVAGRRPTKREMCSLLM
FT                 SLFDPLGFVVHYKIKGMILFQNTWKDGVGWDDAITDDVYSSWIPWLNQMTE
FT                 LEQLRIPRCYSLNLGRSTIQLHTFVDASAEATCGISYLRIQCEDKVEVRFV
FT                 AAKAHVANIKKSTIPRQELCAALTGSKLAHTIMKDLRIKVDSCVFWSDSVT
FT                 VLSWITSESARFKEYVANRVRKIQNLTNPCDWRWIGTAENVADEGTRSRGK
FT                 ADLSSDSRWIRGPAFLRQSSDHWPKRDSSEIGSCSLAVGEESSEGTSKEDE
FT                 RSKRFDIIPDVNRFSSFYKLVRSTAAVPIAAAHWIKKIRQPSKKFPGPWKR
FT                 KDGVLESPLSAENLLNAEKTVIRHVQLESQACKIGAAQRKLKMVMDEDDIL
FT                 RMTGRLMSSVEGSAPILLPPRHHVVDLIIDQEHQRNMHCGRNTVFNNLRQK
FT                 YWIPDGRHAVRRSWTRCLRCRLQKAKPIPPEMGLLPKFRVDCEKPPFTYTG
FT                 ADLFGPVEVTVGRHHEKRWGLLFTCMVTRAVHLEIVYGLTAYETLMGISRF
FT                 VDARGLPSHVYTDNGTNFQAAAKEISKRVKFHGLCWHFIPPASPHMGGAWE
FT                 AMVKQVKRALHQVIKEKFPRDQVLLTALKAVENVVNSRPLAYVSSDLNDPE
FT                 TITPNHFIRGVGVASGSLSNRACITSSAALNGDITEGKEQFGKQWEKAQHL
FT                 AKQFWSRWSKEVLPDLQKRNKWNISREPVAVGDVVIMVDDQRPRNEWIKAL
FT                 VTKVFTGSGGVIRVVEVTTRKFRTKTPTTYRRAVTKICPTGIRCCDLATIL
FT                 GKRPNQGAG"
XX
SQ   Sequence 5256 BP; 1613 A; 1091 C; 1374 G; 1175 T; 3 other;
     gcgtgccgaa acccgggaca ctctctggcg tctgttcgaa atctcaagaa gcagagaaaa        60
     atggcagcaa aaccatggac tgtggacgag ttgaaggaag gtatcaacga aaaaagggag       120
     ttaattgaaa taactaatcg gctgagggag caagctgcag atatcatccg cccttttgtt       180
     ggaaggccag caaattcagt caatgaagaa caacagaaaa aactggaagc tgcacatgct       240
     gaataccaaa acgctcaaaa ggtgatcgaa gaagagctta gaattctgaa cgaaatggag       300
     gaggagctta acgccaggac ctccagcaaa agaaaatccg gatatgctga gtccaccagt       360
     acaacccaga gcatcaactc taggatccgc aaactggagg cgaaattaaa tgaagatctc       420
     gtgcaactca ggcacatata tcaacgtggg aaagccaaca tcgaagatca attggaggat       480
     ctgacctcaa agttaacgac gcttatgtca gaatcggaga aagcggaact actggcccag       540
     aaatcacgtt tggaaaagaa cttgtcacgt gcacacagag attacacaac ggacgtggaa       600
     atgctgaaag aagaagctga agcaagaaag gaggtgctgt tggcagagca ggaggaggag       660
     gaggaagttg gaaatgcaga agtggcgtca gtacaagatt cactacctat cgtgaagaag       720
     tggatacacg agcaacaaag atacgtgcct tatcaacctc caaattcgtg ccgcccaaca       780
     gttaatatca gtggcccagg attacccgaa aacgacggtc aaaaatgtcc aatctcccag       840
     caaaggcaat caacagcacg acaaccccgt cagaaatgtg aaattgtaag tactgaggtt       900
     ccagcagaca aggatacaat gctgatgacc ttgatgcagc agcaattaaa gttcatgcag       960
     cgtggtcgag gtgacaagtt cctccccgaa ttcgacggag atccagccaa atggggaatt      1020
     ttcagatctg cgtatgaaag agcgcaagat aaatttggtt ttgatgatgc mgaaaacctg      1080
     actcgacttc aacgagcctt gaaaggacga gcacgtgacg ctgtggagca cctaatgact      1140
     aatgaaggca acatggaaga aatttggaag acttatattt tctgtcagat ttaaaaatgc      1200
     ggaaaaggtc tccaaagaaa acaaggagga atcaaagagc gatgaagaag ggtcagtcgg      1260
     cgttgcagtt tcacttatca aaggcacgga tggaccattg ccaatagttc cagttcgagt      1320
     aaaagggcct gacggaatcc gtgtggttta cgccatgctt gattcaggtg ctagtcgcac      1380
     acttatcagc aataatctcg caagtgagct cgaccttcaa ggacctacgt tggagtataa      1440
     attccgcact atggcaggag aaattgttaa atgcaaaaag tccaagaagg tgaacctgga      1500
     aatctctgga cgatacaaaa awgcaaaaat gtatcctctw actgacgtgg tgaccgtgga      1560
     caagattggt gtggcaccat actctatcga cgtggacgag gcaaagttga aatggccaca      1620
     tttgcgcagg tacaagggcc cttccctctc taaggctgtt gttgacatca ttatcggaag      1680
     tgatcacggg ttcctagcaa tgcaccgaga tctactatac acctcaccgg atcaacctgt      1740
     agcaatgcgg actgtattgg gatggataat ggtggggaaa ttgggaaaat caagtcatca      1800
     tggatctgga tttcatgttg gtggtgtgtc ggacgacacg ctggacaagc tgataattga      1860
     gtcattcagg cttaacgact acgctgttcg agatggtgaa tcgttaacaa tgtcgcgaca      1920
     ggatgagcga gcccttgaga tcctggagaa tacaacaagg caattggaaa gtggacgctg      1980
     ggagactggt cttctgtgga aaaatcaaga tccctttcca gataacactt atgacgaagc      2040
     attgtctcgt ctcatcaaaa cagagagaag aatggaaaag agcccggaat tcgcagaaat      2100
     ttacagaaag aagataaagg agtatttgga taaaaaatac atccggaagt taccagaggg      2160
     agaagcagcg gctaccactg aacgaacgtg gtacattccg cactttggtg ttgtcaaccc      2220
     caacaagccg ggaaagttta ggcttgtgtt tgattgcgct gcagattcaa agggacaatg      2280
     cttaaactac tttcttttga ccgggcccga tctcatccgc ccactccctg caatattatg      2340
     gaacttctgt cgccatcaag ttgtcatttg tggcgacatt gaagatatgt tccaccgtgt      2400
     cttcattcga aaagaagact taacagctca gaggtttctc tggagggatg gaaacatgaa      2460
     acgagaccca gatatctacg agatgcaggt tatgctgttt ggtgccacct cttccccagc      2520
     cagcgcaatt tttgtcaagg ataagaacgc caaaagattt attgatgatt atccagaagc      2580
     tgtcaactcc atacttaacg atatgtatgt ggatgacaat ctgacaggaa gtgacacggt      2640
     cgagggcgca attcgtctga gaaaagaaat aacaggaata aatggcagag ggggattcat      2700
     cataaagaag tggatttcaa acagcttgga ggtgatgcag agcatcccag aatcgctgcg      2760
     attgtctggc aacaagccac tttttcaaga aggacacacg gagagagtac ttgggcttta      2820
     ttgggaccca aatgatgact gcttcacctt ccgcatcaac tttagcaaag tgaaaccgga      2880
     agtagtagcc ggacgaagac ctacaaagcg agagatgtgc agcctactaa tgtcattgtt      2940
     cgaccctctt ggattcgtgg ttcactacaa aattaaggga atgatcttgt ttcaaaatac      3000
     atggaaagat ggtgtcggct gggatgacgc aataactgac gacgtttact ctagttggat      3060
     tccttggtta aatcaaatga cggaactgga gcagttacgg attccaagat gctacagttt      3120
     aaatcttggt agatcaacaa tccaactgca cacattcgtg gacgcttctg ccgaagcaac      3180
     ttgtggaata agctatttgc gtattcaatg tgaagacaaa gtggaagtgc gctttgtcgc      3240
     tgcaaaggct cacgtggcaa acattaaaaa gtccactatt cccagacagg aactctgtgc      3300
     tgctcttact ggaagcaagt tagcacatac cataatgaag gacttgagga ttaaagtgga      3360
     ttcctgcgtg ttttggagcg actccgtgac ggtgttgagt tggattacat cagagtcagc      3420
     acgttttaag gaatatgttg ccaaccgagt gaggaagatc caaaatctca caaacccatg      3480
     cgactggagg tggattggaa ctgcggaaaa tgttgctgat gagggaacac gctcaagggg      3540
     taaagctgac ttgagtagcg acagtcgttg gatacggggg ccggcgttcc tccggcagag      3600
     ttcagaccac tggccaaaaa gggattcatc ggagattggg tcatgttctt tggctgtggg      3660
     cgaagaaagc agcgaaggca cctccaaaga agatgaaaga agtaaacgtt tcgacatcat      3720
     cccagacgtg aatcgatttt ctagtttcta taaactagta aggagtacag ctgcggtacc      3780
     cattgcagcc gcccactgga tcaagaaaat cagacaaccg tcaaagaaat ttcccggtcc      3840
     ttggaaacgg aaggatggag tattggagtc gcctttatct gccgaaaatt tgttaaatgc      3900
     tgaaaaaact gtcatccgac atgttcagtt ggagagccaa gcctgcaaaa ttggagcagc      3960
     ccaaaggaaa ttgaaaatgg tgatggacga agacgacatt cttaggatga ccggaagact      4020
     catgagctca gttgaaggca gcgctccaat cttacttcct ccacgtcatc atgttgtgga      4080
     cttgatcatc gaccaggagc accagagaaa catgcactgt ggcaggaata cagtattcaa      4140
     caacctgcgg cagaaatact ggattccgga cggacggcat gctgtgcgaa gaagttggac      4200
     acgatgttta cgttgtcgct tacaaaaagc aaaacctatt cctccggaaa tggggctcct      4260
     tcccaagttt cgtgtggact gtgaaaagcc gccatttact tacacaggcg ctgatctgtt      4320
     tggaccagtg gaggtgacgg ttggacgaca ccacgagaag cggtggggtc tactcttcac      4380
     gtgtatggtg acacgggctg ttcacctgga aattgtttat ggactgaccg cgtacgagac      4440
     gttaatgggg ataagccgat tcgtggatgc tcgcggattg ccaagccatg tgtacacaga      4500
     caatggcaca aactttcagg cagcagcaaa ggagatttcc aaaagagtaa aattccatgg      4560
     actgtgttgg cacttcattc ctccagcttc tccgcatatg ggaggtgcct gggaggcgat      4620
     ggtgaagcag gtgaaacgag ctcttcatca agtaatcaag gaaaaattcc ctcgagacca      4680
     agttctgctt acggccttaa aagcagtgga gaatgtggtc aattccagac cactagcata      4740
     tgtttcgagc gatttgaatg acccggaaac catcactccg aatcatttta ttcgaggagt      4800
     tggagtagcg tctgggagtc tctcgaatcg agcatgtata actagctctg cggctctaaa      4860
     cggggacatc acggaaggaa aggaacagtt cgggaaacaa tgggagaagg cccagcattt      4920
     ggccaagcag ttttggagtc gttggagcaa ggaagtcctg ccagacttac agaagcgtaa      4980
     taagtggaac ataagtaggg agcctgtagc tgtcggggat gtcgtcatca tggtagatga      5040
     tcagcggcca agaaacgaat ggattaaagc tttggtgaca aaggtcttta ccggaagtgg      5100
     aggcgttatc agggtcgtgg aggtgacaac aaggaagttc cggaccaaga ctcctactac      5160
     ataccggcga gcggtgacga agatctgccc aacagggata cgatgttgtg atttggccac      5220
     tatccttgga aagcgtccaa atcagggggc cggaaa                                5256
//
ID   BEL-29_SiCu-LTR repbase;    DNA;    INV; 538 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-538
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5026-5026 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 538 BP; 170 A; 73 C; 130 G; 165 T; 0 other;
     tgttgggaat ttagaaagca aggggcaaag tgtgacgggg gaatctccga agaagatgca        60
     tgctgccgac ggtctgtcta ctacggaatt tgagagggag ataggagcgg acttgcgtgt       120
     gaaatgaaga gaagagagga ggaaattgca ttcttctggt attagtagtt ggtaaaaatt       180
     cacgagtaaa agatggttgt acttttgttt tcagtctaat taattttcaa gtgtgccagt       240
     tatctaaaaa attgctaatt agatctggta ttttgctaat tgtaaaaact ataattgatt       300
     actgctgaaa gtaataaaac tgctgtttgt aaaaataact tttctgacga ttttttgaag       360
     ttgattattg tgttcgtagt agaagcacgg tcggagcgac caatcatcat cattgtgtag       420
     gcgttgtata gggaaagtta attttcaacg tagcataaat aaaactgctc ttgcgctttt       480
     gaacattcca tccaggagac ggacacttat agggatagtg attcgtaaaa cccaaaca         538
//
ID   BEL-29_SpEx-I repbase;    DNA;    INV; 6213 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6213
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6909-6909 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           896..6184
FT                 /product="BEL-29_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPYDYESSGKTHLKDLITKRSSIKGQITKFKNYLNSI
FT                 GNCTELSNNQFTELTLKLARFEVLSGKIDSLQSEIEVLNSENLASEIDERD
FT                 SIESDIIANIATAKTLLATFSKHECEHRRTSIHDNSCCSDHQTAGLKLPQI
FT                 QIAKFDGAYFRWLEFRDTFESLIHKNERITPIHKFHYLISYLEGDAARIIS
FT                 NLEVSSSNYSQAWNLLCSRYNNKRILINYHLNSLFNIKQLPRESERSLRFL
FT                 VDHVTKNLRALSSLGQPTDKWDVLIIFMLSSKLDATTLTKWEEFRNILDGD
FT                 TPNLDQFYKFIIDRADVLESLNRNNNIKYESHSPKPQVVNTRSNSGTNSYS
FT                 NKQNSYTKSFASSNTKSNKFNNSNNNNSNNNNSNNSNVYLCIICNENHRIF
FT                 DCPTFKAKGINERMKDISKYKLCVNCLRQGHQLSACRMGPCRECNKRHHTL
FT                 LHRPTVTDINNQVIVDEPNETVVSFSNRNSNQILLSTAMIDVLNPLTQQKA
FT                 KVRALLDCGSQSSFISKSLKEAICLKSNPIDSLKVIGIGNTVTSNVAECCN
FT                 IQIKSLDNKYNAMCSCLVLNELTGYIPKYPININNLNIPKDIQLADPSFNQ
FT                 PAPVDVLIGADLFWDILGNQKRSLGPQNPQLRNSNLGWIISGPLYSNCRSN
FT                 FTQCNQASTVAMSKQNETEKLIAKFWELEEIPSKRIMSENEQACERHFITH
FT                 TRREADGRFCVRLPLKDTPDCLGDTYKLARKRFSYLEKKFRNNTLLKCEYG
FT                 KFINEYAELGHMSLAKDYGQLSYHLCHHAVLKEESESTKLRVVFDGSARST
FT                 SGYSLNDILMVGPTLQDSLFSILIRARQYKFLLTGDIEKMYRMVNVRKEDR
FT                 NLQRILWRDDESHPIQIFNLNTLTYGTACASYLSTRCLWQLGEEQHDESIK
FT                 NIIQRDFYVDDLITGSNDEQELRYIQKSISEALKGGCFNLRKYKSNCPSIF
FT                 EDIRLNENDYLTISESSSTLGLGWVPSSDTLHFPIKNFSVGKDAVITKRFV
FT                 MSNSFKIFDPLGILSPVIIQPKTMLQKMWQQKLDWDEPVTAALRDEWLKFT
FT                 DNLQWLSKFHIPRLALCQMPSSVELHSFSDASQSAYGACIYLKSVNRHGET
FT                 TVKLLCAKSKVSPLKPTTIPRLELCGALLSAQLCRSVVNSLRYKLDRIVHW
FT                 CDSSVVLNWINNDPAKLKMFVANRVCEIRELTEPSSWRYVPTAQNPADIIS
FT                 RGMDAKRLLNLDLWWYGPDFLHKAESDWPMLKECSLENLPELKSHSVTVSK
FT                 SDPLQRDTLVNFDNYTSFNKLRRIFAYVRRFIFNAKNPNNKRKGILSVEDY
FT                 NESFHSLCLIAQRECFPLEYDLLIKQKPIPSKCKILSLSPFMDKSNLIRVG
FT                 GRIDASSCAYEKKHPILLHSSHNLTKLYFKNEHQLNLHAGPQLLLATVREI
FT                 IWPINGKHLARRIVNKCMRCRRLSAKTLCPKMGDLPAQRVNPDFPFLSVGL
FT                 DFAGPFFILNRKGRGGRLVKCYLCLFICLRYKCIHLEAVSDLTKDAFIMTL
FT                 RRFISRRGKPSEVFSDNGRNFVAAAKEIANFIKQNEEPLSSYASELGIRFK
FT                 FIPTYAPHFGGIWEAGVKSAKYHIKRVVGNSNLTFEEISTLFAQVEAILNS
FT                 RPLCPLSSCPDDLLSLSPGHFIIGRPLAALPSPVLDNNDRNPRNRYERLEK
FT                 IRLHFWQRWQREYLSELQQRTKWQNNNSKLNIGDMVLLAEDNAPPLNWRLG
FT                 RVLRLYPGPDGISRVADVKTARGCVRRPFTRLCPLPTAEELKC"
XX
SQ   Sequence 6213 BP; 1996 A; 1137 C; 1212 G; 1868 T; 0 other;
     tattggtggc ccatgagggg aaataataca aataaatgaa gaaataagaa gaaattcaag        60
     agaaatacgg aggaaaaatc tcatcaagac gcacgtctga ttgatgtcct actttctttg       120
     gcgcgctgaa aactgaagaa aggtgttcaa aaatcgaagg tgcagcctgg atcatccacg       180
     agtccggctg aagcgagcag tgatctagct aaaggaccac atcgcgcaac aaccgtccaa       240
     atacagatga gtgccctttc ctccttactt tctcaaacca ccaaaatcca aattctaatg       300
     acctaaaacc taatcctagc atttgggaat caaattcact tgtgcaaata aagtaagata       360
     acgttaaatt cattaatagt ataaaattgc atcatcattc aatttttttt tttgctaatc       420
     taccgtcctg ttgaaaaagt aattttaatt gttctgtgtt ttttacgtct taatccatct       480
     caatccatct caagtgttga ttattcttgt tgataataat accaaaatta attatactta       540
     gtttaatcat aattacaact aaaataatga gttaaatttt tctttcttaa aagtaggtca       600
     cggtacattt gttaattgat cgtgcatttc ctcattcaat gataagtact tatacatatt       660
     tgccgataat tacagaaaat tgtaatactc gctggcgcat cttgtcaccg caccgcatct       720
     gcgttatcag cagtgcaagc cgagcgtaac cggtttgcgg gcagcaggtg gcgtcgaatc       780
     gaggagcgtg agccattcat tattgtttaa cacatcatat tttttattag gagttttccg       840
     ttgttagata atttcatttt ttgcactact tggtgtcttg tttgttggta tcatcatgcc       900
     ttacgattac gaatcaagtg gaaagactca tttaaaagac ttaataacca aacgatcatc       960
     aatcaaagga caaatcacta aatttaaaaa ttatttaaat agcataggga attgtacaga      1020
     gctgagtaat aatcagttta cagagttaac tttgaaactt gctagatttg aggtattgtc      1080
     cggtaagatt gacagcttgc aaagcgagat cgaggtttta aattcagaaa atttagcatc      1140
     tgaaatagat gaacgtgaca gtattgagag tgatatcatt gctaacattg ctactgctaa      1200
     aacattgcta gcaacattta gtaagcacga atgcgaacat aggcgcactt caattcatga      1260
     taattcttgt tgctcggatc atcaaacagc tggcttaaaa ttacctcaga tccaaatagc      1320
     taaatttgat ggcgcgtatt tccgatggtt ggaattccgt gacacgtttg agagtttgat      1380
     tcataaaaat gaacgtataa cgcctataca taaattccat tatctgattt cttatttgga      1440
     gggagatgct gcaagaatta tatctaatct tgaagtatcg tcctcaaact attctcaagc      1500
     atggaattta ctttgtagtc gatataataa caagaggatt ttgataaatt accacttaaa      1560
     ttcactgttt aatattaagc aacttccacg tgagtcagaa cgatccttga gatttttagt      1620
     agatcacgtc acaaaaaatt tacgtgcgtt gtccagctta gggcagccta cggacaaatg      1680
     ggatgtgctt ataattttta tgctatcatc taaattggat gctaccacgt taactaaatg      1740
     ggaagaattc agaaatattt tagatggtga tacaccaaat ttggatcagt tttataagtt      1800
     tataattgac cgagctgacg tgttagagtc tttaaatcgt aataacaaca ttaaatacga      1860
     aagccattca ccgaaaccac aagtagtaaa tacgcgcagt aactctggta caaatagtta      1920
     tagtaataag caaaattcgt atactaagtc gtttgcctct tctaatacaa aatcgaataa      1980
     atttaacaat tctaataata acaattctaa taataataat tctaataatt ccaatgtata      2040
     tttatgtatt atttgcaatg aaaatcatag aatctttgat tgtcccactt tcaaggcaaa      2100
     ggggataaat gaaagaatga aagatatttc gaaatacaag ttatgtgtca actgtcttag      2160
     gcagggacac cagttaagtg catgtcgcat gggaccgtgc cgcgagtgca ataaacggca      2220
     ccatacctta ctgcaccgtc ccactgtaac tgatattaat aatcaagtta ttgtagatga      2280
     gcctaacgaa actgtagtta gcttttcgaa tcgaaattca aaccaaatac ttttgtcaac      2340
     cgcgatgatt gacgtgctga atccattgac ccaacaaaag gcgaaggttc gagcactgct      2400
     agattgtggt agccaatcat cttttatttc caaatcatta aaagaagcaa tttgtttaaa      2460
     gtctaaccct attgactcac taaaggtcat aggcattgga aatacagtta cttctaacgt      2520
     tgccgaatgt tgcaacattc aaataaaatc ccttgataat aaatacaacg cgatgtgttc      2580
     atgtttagta ctcaatgaat taacaggcta cattccaaag tacccgatta atattaataa      2640
     tttgaatata cctaaagata ttcagttagc tgatccttcg tttaatcagc cagcacccgt      2700
     tgatgtcttg ataggggctg atttattctg ggatatcctg ggtaaccaaa agcgttccct      2760
     tggcccgcaa aatccacaac taagaaatag taatctaggc tggataatct ccggtccttt      2820
     atattcaaat tgtcgtagta attttacaca gtgtaatcaa gcgtcaacag ttgcaatgtc      2880
     aaagcaaaat gaaactgaaa aattaattgc caaattttgg gaattggaag agattcccag      2940
     taaacgaata atgagcgaaa atgaacaggc ttgtgaaagg cattttatta ctcatactcg      3000
     tagagaagct gatggtaggt tctgtgtcag actaccactt aaagatactc cagattgtct      3060
     gggcgacact tataaattag ctcgaaaacg gttcagttat ttggaaaaga aatttagaaa      3120
     taatacattg ttaaagtgtg aatatgggaa attcattaat gaatatgctg aattggggca      3180
     catgtcgtta gctaaagatt atggacaatt atcttaccac ttgtgtcatc atgcggtttt      3240
     gaaagaggag agtgagtcca ccaagttgcg cgtagttttc gatggatctg caagatctac      3300
     atcaggttac tcgctaaatg atatcttaat ggtaggtccg acactccaag attctctatt      3360
     ttctatatta atacgtgcta ggcagtataa attcttgctt accggagaca ttgagaaaat      3420
     gtatagaatg gtgaacgtga gaaaggaaga tcgtaatctc caacgcattt tgtggagaga      3480
     tgatgaatct caccccattc aaatatttaa tttaaataca ctcacctacg gtacagcgtg      3540
     tgctagttat cttagtacgc gttgcctatg gcaacttgga gaagaacagc atgatgagtc      3600
     tataaagaat atcattcaaa gggattttta cgtggatgac ctgataaccg gatccaatga      3660
     tgagcaggag ctgcgctata tacaaaaaag catttccgaa gctctaaagg gtggatgttt      3720
     taatttaaga aaatataaaa gtaactgtcc atcaatattt gaagacatta ggttaaatga      3780
     aaatgattat ttgactatca gtgaatcctc tagtactcta ggtcttggat gggtcccgtc      3840
     cagtgacaca ttacactttc ctattaaaaa cttttctgtt ggtaaagatg cagtgataac      3900
     gaagcgattc gttatgtcta actcatttaa aatattcgat ccattaggga tccttagccc      3960
     agttataatt cagcccaaaa ctatgttaca aaaaatgtgg caacaaaaat tggattggga      4020
     tgaaccagtc acagctgcgt tgagagacga atggttaaaa tttactgaca acttacagtg      4080
     gctaagcaaa tttcatatcc ctagattagc tttatgccaa atgccaagct cggtagaatt      4140
     gcattcattt agtgatgctt cgcaaagtgc atacggtgca tgtatttatc taaaatcggt      4200
     gaaccgtcac ggcgaaacca cggttaaatt gttatgcgct aaatcaaagg tctcaccatt      4260
     aaagcccact acgataccgc gtcttgagtt gtgtggagcg ttactatcag ctcaactctg      4320
     taggtctgtt gttaattccc tacgctataa gctggacaga atagtgcact ggtgtgattc      4380
     tagcgttgta ctgaattgga taaataacga tccagcaaaa ttgaaaatgt tcgtagctaa      4440
     tcgcgtctgt gagataagag aattaactga accatcgtca tggcgttacg tcccaactgc      4500
     ccaaaatcct gcagacataa tctctagagg tatggatgca aaacgtctgc taaatctgga      4560
     cttatggtgg tatggacctg actttctgca taaggctgaa tcggattggc caatgctgaa      4620
     ggaatgtagt ttagaaaact tacctgaatt gaaatcacac tcggtaactg taagtaaatc      4680
     cgatccgttg cagcgcgata cattagttaa ttttgataat tacacgtcat tcaataaact      4740
     acgtagaata ttcgcatatg ttcgacgatt catatttaat gcaaaaaatc ctaataacaa      4800
     gcgaaaaggt attttgtccg tggaagatta taatgagtca ttccattcac tgtgccttat      4860
     tgcacagcga gagtgttttc ctttagagta tgacttacta ataaagcaaa aaccaatccc      4920
     atcaaaatgt aaaatattat ctctgtctcc gtttatggat aagagcaatt taattcgtgt      4980
     cggtggacgt atagatgcgt cttcttgtgc ttacgaaaag aaacatccaa tattgttgca      5040
     cagtagccat aatctaacaa aactttattt caaaaatgag catcagctca atttgcatgc      5100
     cggccctcag ttattgttag cgactgtgag agaaattatt tggccaatta atggtaagca      5160
     tttagctagg cgtattgtta ataaatgcat gcgatgtaga cgtctaagtg ctaaaacact      5220
     gtgtccaaag atgggtgatt tacctgcgca gcgtgtcaat ccagatttcc cgtttttgtc      5280
     cgttggctta gatttcgctg gaccattttt tattttaaat cgcaaggggc gtggaggtcg      5340
     cttagtcaag tgttatttgt gcctattcat ttgtttgcgt tataaatgta ttcatttgga      5400
     agcagtcagt gatttgacga aggatgcatt tataatgaca cttagacgat tcatttcacg      5460
     tagagggaag ccatcggaag tatttagtga taatggtcgc aatttcgtgg ctgctgccaa      5520
     ggaaatagct aatttcataa aacaaaatga ggagcctcta tctagttatg caagtgaact      5580
     aggtattaga tttaaattta tacctactta cgctcctcac ttcggcggca tctgggaggc      5640
     cggggtaaag tcggctaaat atcacataaa gcgagttgta ggcaatagca atttaacatt      5700
     tgaggaaatc tcaactttat ttgcacaagt ggaggcgatt ctcaatagtc gtcccttgtg      5760
     cccgttatca tcatgtcctg acgacctcct ctccctatcc ccagggcatt tcatcattgg      5820
     tcgaccgcta gctgcactac cctcgccagt tctggacaac aatgacagga atccacgaaa      5880
     tcgatacgaa cgtcttgaga aaataaggct tcacttttgg caaagatggc agcgggaata      5940
     cttatcagag cttcagcaga gaacaaaatg gcaaaataat aattccaagc ttaacatagg      6000
     agatatggtg ctgttagcgg aagataatgc cccaccattg aactggcgtc taggacgagt      6060
     tctgcgtctg tatcccggtc cagatggtat atcaagagtt gcagatgtca agactgcacg      6120
     cggttgtgtt cgacgaccct ttactcgtct ctgcccgcta cctactgctg aagagttaaa      6180
     atgttgaaag caggctttca acggccggga ata                                   6213
//
ID   BEL-29_SpEx-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-29_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-214
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6937-6937 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 214 BP; 66 A; 45 C; 35 G; 68 T; 0 other;
     tgttgcgtct caggttcctc acaaaaatat aaaggcaaag ttacgtcgaa tcgagactga        60
     tatttagata attcgaggca cttggtgcat ttgtatcata ttcttttgag ttcgccattc       120
     caccgccacc cgcacctctg tacacacgga ttaaaatata ttgttaacaa attttcggac       180
     tttaatttaa agccccagtg tatataaata taca                                   214
//
ID   BEL-2_AA-I  repbase;    DNA;    INV; 5756 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AA_;
KW   BEL-2_AA-LTR; BEL-2_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5756
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 853-853 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4750-5340] - Integrase core
CC   'GAGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..5754
FT                 /product="BEL-2_AA-I_1p"
FT                 /translation="MKAEAMRKNAHHHKTLLRRRDNIIGSAKLIKSFDDQY
FT                 DVEQANQVPLRIERLDELWRSFETVQDEIEVIEDSDQEFSDLRQEFHDMYF
FT                 SLKASLITKLPTNEAPALNQAVPVAPPPPIPVMSVKLPELKIPEFDGQPEQ
FT                 WIEFRDLFKSVIHSNVQLSAVQKIHYLRSSLKGEASRLISSIPITANSYSI
FT                 AWKAICDRYENTNYLVKQHMSALFRIPSIKKGSATALAELADEFNRHVGIL
FT                 DKLENPNRHWNSFLVERLSSLLDEKSLLEWESQCDEEGTEYTDLLEFIHKR
FT                 SRTLQKCAASCVAPASGYAKPAKGKASSSHVASEHVPKCPTCKQAHPITQC
FT                 DAFSKLSPNQRLECAKKHRLCINCLRGGHMAKDCRSSLCRTCGKKHHSLLH
FT                 LPSLTSASSIVETPGESESPVTSQACAVICPSTTVPTSQSDGSRSVVNEPS
FT                 VVHAMSIPQVVSSLRSSKSSIDRVCPPSSSSVVSSDILEHEPSPTCLQQPA
FT                 ASLTQSNNARDSTVFLSTAVIRVKDVNDVYHFARAMLDSGSQSNFISESLC
FT                 QKLNLKRIRHNLPVSGIGQAIVNVRYKVNLTFASRFGGFDQLLECLVLPKL
FT                 TVNLPCRSVDITQWNIPNNLPLADPRFNICHGIDLIIGAELFYTLLETQRI
FT                 TLADEFPILQKTTLGYVVSGKASIQPTESVLCHVATNQELNAQLERMWEIE
FT                 EFSHGKAFTPEEQQVEEHFIRTAARDESGRYVLRLPFRESAMPLLGDSYKA
FT                 AVNRFLLMERRFTKDHELRQEYTEFMEDYIRLGHMEECSRVAGPQFFLPHH
FT                 AIRRPDSTTTKTRVVFDASSKSHGQLSLNETLFTGPTVQPSLLAIVLNFRI
FT                 PKYVFSADVEKMFRQVWIHPDDRRFLQVVWRPDATVPLKTYQLKTVTYGLA
FT                 CSPFQAARVLNKLADDEGDKFPLAAPIVTKCFYVDDVLGGGDDLDKTAESC
FT                 RQLQDLLSQGGFSLRKWSTNHPKVLQQIPEELRATSSLTEIGKSASTKALG
FT                 LLWNPSTDLFGFQVPTLQPVDIITKRSVVSEMSQLFDPLGLLGPVVVSAKI
FT                 FVQRLWAKQFSWDESLPKEETDWWKNFRSELVQLKNVTVSRCVRPSCNENY
FT                 QLHCFCDASSKAYGCCVFVVGPNDRGRIECRLLIAKSRVAPLRGLSIPRLE
FT                 LCAAVLGSELVHNLLATTNFSSPVTFWSDSTVVLQWIQSPPNVWKVFVSNR
FT                 IAEIQRLTRTCRWRYVPSSLNPADRISRGIQPSQIAEDLLWWEGPPFLSQS
FT                 VDTWPESPKGIPSPNDFEEEKRATVVLTAFEVDDTIFERYSELGKLLKVVA
FT                 LCIRFGRNCRRTPVDRTVGNLNAAEVDEALKRLVRMSQISSFPKEIHHLTN
FT                 KTVDTRCSYNFDSKSPLRNLNVFVDEHGLLRLDGRLKNITAPFDSKCPLIL
FT                 PAKHRYSLLIARSLHLRTAHSGPSLLLATIRQRFWPLRGRDLVRRTVRSCI
FT                 TCFRCRPTECNQQMAPLPTVRVVPSRVFSRSGLDYCGPFNVRPLYGRGANI
FT                 KMYVAIFVCLAVKAVHFEIVTDLTTAACINAIKRFVARRGRLTELHCDNGT
FT                 AFVGADRELNALRRRYLEQFQSDEWTNYCVEAGITFRFIPARSPHFGGLWE
FT                 AGVKSFKFHFRRIFGGKSYTFDEFSTAAVHIESILNSRPLTPLTDHPDDLN
FT                 VLTPGHFLIGEPMFSIPEPDVTNTTVSRLSRLQEMRRSVQHFWKVWSTDYI
FT                 SQLHQRTKWRTAKPNVQVGALVLLTQDGLPPFMWNLGRVEEVYTGSDGLVR
FT                 VVLVRTNRGSFKRAVTQVRVLPIEDPEDDDQQRTTRSMVETDRFNGAQ"
XX
SQ   Sequence 5756 BP; 1540 A; 1384 C; 1358 G; 1474 T; 0 other;
     ataaatggtg ccgaaacccg ggacgttgat cccacagtga ctgagtgctt ttcgattttt        60
     aattcccacg tgctccggat cattccattc acgcttcaat tgtgctgttg tcgagtcgtt       120
     gccgtattgc accgagattc taccatccca tcgcagagtg gaagacgtcc gcgagaaggt       180
     tttgtccagg aatcgaagtc gagcattgtg tcgaacgaac ggagaggtta gacgaaacac       240
     gtggcgtagg tcaatcatca tctgcaggtg ggtacactac tatttttcac ctaagtgatg       300
     aaagcagaag ccatgcgaaa gaacgcacat catcacaaaa ctcttctgcg gcgaagagat       360
     aacatcatcg gctcggcaaa attgatcaag tcctttgacg atcagtatga tgttgagcag       420
     gccaaccaag tgccattacg aatcgagcgt ctcgatgagc tatggcggag cttcgaaacc       480
     gttcaggatg aaattgaggt tatcgaagat agcgatcaag agttttccga ccttcgtcag       540
     gaattccacg atatgtattt ttcattgaaa gcttcgttga tcaccaaact gccgacaaac       600
     gaggctcctg cactcaatca agctgtaccc gtagctccac cgcctcctat tcccgtaatg       660
     tctgttaaac ttccggaact aaaaataccg gaattcgacg gacagccaga acaatggata       720
     gaattccgtg acctttttaa atcggtcatt cattctaacg tacagctatc tgctgtgcaa       780
     aaaatccatt accttagaag ctcgctcaaa ggtgaagctt cccgtttaat ttcatcgatt       840
     cctatcacgg cgaatagcta ttcaatagcg tggaaggcca tatgcgatcg ttatgaaaac       900
     acgaactatt tggtgaaaca gcacatgtcg gccctgttcc gtattccttc catcaaaaag       960
     ggatcggcca cggcattagc tgaacttgca gacgagttta atcgacacgt cgggatttta      1020
     gataaacttg aaaatcctaa ccgtcactgg aactcattcc tagtagaacg attgagtagt      1080
     ttgttggacg agaaatcgct tctagaatgg gaatcacagt gtgatgagga agggacagaa      1140
     tacaccgatt tgttggaatt catccataaa cgatcgcgta ccttgcaaaa gtgtgctgca      1200
     tcttgtgtag ctcccgcgag tggttatgca aaacccgcta aggggaaagc ttcctcttct      1260
     cacgttgctt cagaacatgt acctaaatgt ccaacgtgta aacaagcaca tccgataaca      1320
     cagtgcgatg ctttctctaa actttcacca aatcaacgat tggagtgtgc caaaaaacac      1380
     cgattgtgca tcaactgcct gaggggtggt catatggcga aggactgccg tagcagcttg      1440
     tgcagaacat gtggcaagaa acaccacagc ttgctgcacc ttccctcgtt aacctctgct      1500
     tcttcaattg tcgaaacacc aggggaaagt gaatcaccag tcacttctca agcatgcgct      1560
     gtaatctgtc cctcaactac agtgcctacc tcacaatcag acggttcgcg ttcggtcgta      1620
     aatgaaccat cggtggttca cgcgatgtcg ataccccagg tagtgtcgtc gttacgcagt      1680
     agtaagtcgt caatcgatcg ggtgtgcccc ccttcttcgt cgtcggttgt gtcgtccgat      1740
     attcttgagc atgaaccctc tccaacatgc ctacaacagc ccgccgcttc attaacacag      1800
     tcaaataatg ctcgtgacag taccgtcttt ttatcaacag ccgtcatccg agtaaaggac      1860
     gtgaacgatg tataccactt cgcacgagct atgctagaca gtggctcaca gtcgaatttt      1920
     atttcggagt ctttgtgcca gaaactaaac ctaaagcgta tacgtcataa ccttcctgtc      1980
     agtggaatag gccaagcaat tgtaaacgtt cgctataaag taaatttgac atttgcctct      2040
     cggttcggtg gattcgatca gctgctcgaa tgtttggtgc tgcccaaact gacagtcaat      2100
     cttccttgcc gcagtgttga catcactcag tggaacattc caaataatct accgctagct      2160
     gacccaagat ttaatatttg ccacggtata gatttaatta ttggagcgga attgttctat      2220
     acgctgctag aaactcaacg tataacatta gctgacgagt ttcctatttt acagaaaaca      2280
     accttaggat acgtcgtgtc cgggaaagcg tctattcagc ccacagaatc ggtgctgtgt      2340
     cacgtagcta ccaatcaaga actgaacgct caattagaac ggatgtggga aatcgaggaa      2400
     ttcagccacg gaaaggcctt tactccggaa gagcaacagg ttgaggaaca ttttattcgt      2460
     accgccgctc gtgatgaaag tggccgatac gttctgcggc tgccttttcg agaatcagct      2520
     atgccactcc tgggagactc ctacaaagca gctgtaaacc gttttttgtt gatggagcgt      2580
     cgtttcacga aagaccacga attgagacag gagtatactg agttcatgga ggattacatc      2640
     aggctggggc atatggagga atgctcacgc gtcgcgggcc cgcagttctt tcttccacac      2700
     cacgccattc gacgaccgga cagcacgaca accaaaacaa gggttgtctt cgatgccagt      2760
     agtaaaagcc acggtcaact gtcgttgaac gaaacactgt ttaccgggcc tacagtgcaa      2820
     ccaagtctgc ttgccatcgt actcaatttt cggatcccaa agtacgtatt ttccgcagac      2880
     gtggaaaaaa tgttcaggca agtgtggata catcctgatg accgaaggtt cctccaggtt      2940
     gtctggcgtc cagatgcaac agtaccattg aaaacgtatc aactgaaaac cgtgacctat      3000
     gggctggctt gttctccctt tcaagcagca cgggtcctaa ataagctagc tgacgatgaa      3060
     ggcgataaat ttccacttgc agctcccatc gtcacaaaat gtttttacgt cgatgacgtg      3120
     ctaggcggag gagacgattt ggataaaacc gctgaatcat gccgacagtt acaggatctc      3180
     ctcagtcaag ggggattttc cttaaggaaa tggagtacaa atcatccgaa ggtattgcag      3240
     caaatcccag aagagctccg agctacctcc tcattaacgg agatcggtaa aagtgcatct      3300
     acaaaagcac ttgggttgct atggaaccca agtacggatc tatttggatt tcaggtacca      3360
     actcttcaac cagttgacat cataacgaag cgctcggttg tttccgaaat gtcgcagctt      3420
     tttgaccctc tggggctgct tggcccagtt gtcgttagcg ccaagatatt tgtccaaagg      3480
     ctgtgggcaa aacagttttc ttgggatgaa tcactgccaa aagaagaaac cgattggtgg      3540
     aagaactttc ggtcagagtt ggtccaattg aaaaatgtta cagtgtcgag atgcgtgcgg      3600
     cctagctgta acgaaaatta tcagttgcac tgtttttgtg acgcctcgtc aaaagcatac      3660
     ggttgctgcg tttttgttgt cggacctaac gatcgcggac gcatcgagtg taggctgctc      3720
     atcgcgaaat cgagagtagc cccattacga ggactatcta ttcccaggtt ggaattatgt      3780
     gccgcagtgc ttggcagtga attagtccac aacctactgg caaccactaa tttctcgagt      3840
     ccagttacgt tttggtcaga tagtactgtt gtgttgcagt ggatacaatc accacccaat      3900
     gtttggaagg tgtttgtttc aaatagaata gccgagattc agcgccttac acgaacttgc      3960
     cgatggagat acgttccatc ctctctcaat cctgctgacc gaatatccag aggtattcag      4020
     ccaagtcaaa ttgctgagga tctcttgtgg tgggaaggcc caccattctt gtcccagtca      4080
     gtggatacat ggccggaatc tccaaaaggc ataccatcac ccaacgattt cgaagaagaa      4140
     aaacgtgcga ctgtcgttct aactgcattc gaagttgatg acaccatttt tgagcggtac      4200
     tccgagttgg gaaaactttt aaaggttgta gcattgtgta tccgtttcgg aagaaactgc      4260
     cggcgaactc cggtcgatcg aaccgttggc aacttgaatg cagcagaggt agatgaagcg      4320
     ctgaaacgac tggtaagaat gtcacaaatt agtagttttc caaaggaaat acaccacctt      4380
     acaaacaaaa cggtagacac tcgatgctct tataattttg acagcaaatc ccctttgaga      4440
     aacttaaacg tgtttgtaga cgagcacggc ttactgcgtt tggatgggcg tttaaagaac      4500
     ataactgccc cgtttgattc caaatgcccc ctcatattac cagccaagca tcggtacagc      4560
     cttttgattg cgcgatcatt gcatttaagg acagcccact ctggtccttc attactactc      4620
     gccactatcc gtcagcgatt ttggccgtta cgtggccgcg accttgttcg aagaacagta      4680
     cgtagctgca taacgtgttt tcgttgtcgc ccaaccgaat gcaatcaaca aatggcacca      4740
     ctaccaacag ttagggtggt tccatcgcga gtattctcaa gatccgggtt ggattactgc      4800
     gggccattta acgtacgtcc gttgtatggg aggggggcaa acattaagat gtacgtcgcg      4860
     attttcgtat gcctggcggt taaagcggta cattttgaaa tcgttacgga ccttacgacc      4920
     gccgcatgta ttaacgcgat aaaacggttt gttgctcggc gcggtcgatt aaccgagtta      4980
     cattgtgaca atggcacagc attcgtcgga gctgatcgcg aactaaacgc gttgcgtcgt      5040
     cgttacctcg aacaattcca gtcggatgaa tggacgaact attgtgtcga ggctggaata      5100
     acatttcgct ttataccggc acgatctccc catttcgggg gattgtggga ggccggagtt      5160
     aagtcgttta agttccattt ccggcgcatt tttggaggaa aatcttacac cttcgacgaa      5220
     ttttctaccg cggcagtgca cattgagagt atactaaact cccggcctct cacacctctt      5280
     actgaccatc cagatgacct caacgtgctg accccaggtc attttttgat tggggaaccc      5340
     atgttctcga taccagagcc tgatgtaact aacaccacag tttcgcgact ttctcgcctg      5400
     caggaaatgc gtcgatcagt acaacatttc tggaaggtgt ggtcgacaga ttacattagc      5460
     cagctacatc agcggaccaa atggagaacg gctaagccca acgttcaagt tggagctctg      5520
     gtgctcttga cgcaggacgg tctcccaccg ttcatgtgga acctcggtcg agtggaggag      5580
     gtatatacag gaagtgacgg cctagtacgt gtggtgttgg tacgcaccaa ccgtgggtca      5640
     ttcaagcgag ctgttactca ggtccgagtt ctgccaatcg aggaccctga agacgatgac      5700
     caacaacgta cgacgagatc aatggttgaa acagaccgtt tcaacggggc ccagga          5756
//
ID   BEL-2_AA-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AA_;
KW   BEL-2_AA-I; BEL-2_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-395
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 854-854 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 395 BP; 120 A; 89 C; 73 G; 113 T; 0 other;
     tgtctgagat tattaattgt tattttttac ctttcttgaa tttacttttg aaaatttgaa        60
     tttgccaata cagactaata ctaaataaaa gtgtatatct agataaacga tctaacgatc       120
     acattgccag atgaacagga aatagatgag gcctctcgta ggtcccagtt accactacac       180
     acgaataaaa tactgtaccc aatagctttg taagttagtt gaaatatagc agtcgatcgg       240
     aaaggaacac tttctcgcgt aggccagtcg tgagccgaaa catccgaagt tccctaaagt       300
     ccggtcttcc acagtcgcgt taaaattctc tatcgcttcc gagatccgcg agttctggca       360
     agcgccaccg tccgccgaat atcttcccgt gaaca                                  395
//
ID   BEL-2_AEc-I repbase;    DNA;    INV; 5786 BP.
XX
AC   .
XX
DT   10-OCT-2011 (Rel. 19.03, Created)
DT   10-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AEc_;
KW   BEL-2_AEc-LTR; BEL-2_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-5786
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 655-655 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4287-4856] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(117..3578,3582..4985)
FT                 /product="BEL-2_AEc-I_1p"
FT                 /translation="MSEEINTLLTAQSDIHGRMARSVANLKKMGMANITLH
FT                 AVETRLALLDQLWTKFERQHELIRAHYKEAFDESEYSTSQFADSAEITYVQ
FT                 QRSLLNDYLTKLKAEKSNTAPPNESGNDFSTKSALPRLKIRSFSGAFEDWP
FT                 SFRDIFLSIVGNNPSISNVEKFHHLKHCLEGSAEALIRPLAVTGDNYSRAW
FT                 ALLCKHYENKKELSRSNFCTFTAVQKMKSDTAEELSRIYNAAISAVNGQES
FT                 IGRPINSHGFDFFNHFIIELFDPKTRLEWESHTSDSTDLPDHDTLMDFITK
FT                 RTLTLKAAKPKATKVFGDPPRIAKSHVAKRVADAPGCVLCKGRHNVMMCEQ
FT                 FKAKSASERKSVAETHRLCYNCLGSHPIAKCQSTKTCFTCKARHHTLLHEA
FT                 YVTAKPADVSALTAVRQDDECKAILLATARITVADRHGDPHPVRVLIDQGS
FT                 EVSLISEALVQRLRLPRSRAAISIFGIGGSPSGSCRGKVSLSLTSRINGAR
FT                 VTAFILPRLSLYQGAATTCKTTWPHIEGLQLADPQFSAADPIELLLGAEVC
FT                 SIILQEGLRKGDPHTPVAQCTLLGWILSGGCGENLSVTPHRSFQCTADHEL
FT                 TTLVQRFWEQEKEPSASVSITPDEQRCEEIFARTHSRTATGRYVVRLPFAA
FT                 SPTALGDTRQSAERLLTAMERRCERDVRFGRLYHAFLKEYEELDHMELVPR
FT                 SSESQARCYLPHHGVLRESSASTKLRVVFNGSQSTRSGKSLNTQLLVGANL
FT                 LPSLADVLTRWRWHRYAIVTDIEKMYRQILVAPEDRDYQRILWRHSVSDPV
FT                 REYRLNTVTYGLSCAPFLAIRTLRQLADDENARFPRGSAVLRHDCYVDDIV
FT                 TGAYTKDEAIAIQSELRQLCMAGGFPLKKWAANHPEILFGIPADHCLADSR
FT                 SWEHESHATLGLQWHPVDDTFTFSIRSRTVEKFTKRKVLSETARLFDPLGW
FT                 LTPVVIRAKILLQSAWLQKLDWDAPLPQADACHWSRFLEELPKLEQLRINR
FT                 WLNTGAKDARVELHGFADASERGYAAVVYLRVISANSVNVLLLAAKSKVAP
FT                 IKPVSLPRLELCAAALLTKLVAHTRTVLSLSTAPVTLWSDSKVTLYWIQGH
FT                 ASRWKTYVANRVSMIQEALPEGQWRHVPGKDNPADCASRGITPGELDHPLW
FT                 WSGPSWLLKDNSTWPSAQPEAPLEELLEQRVHSRTVTSKVVTEPELLLRFS
FT                 SLHRLLRVTAWCLRWLRPRGMPTTEGSPESTLTPDELDAALGRWIRAVQAL
FT                 HYAHEVTAAKDQRPMPPRSQLRALNPFIDEQGVLRVGGRLKHAVLSPDERH
FT                 PMIIPPHSHLTRLLISSCHRRTLHGGVQLTLGLLRLRYWIPRGRAMTKYWL
FT                 HRCVTCTRWRGVTPQPPMGNLPQGRVTPARPFLRTGIDYAGPILIRTNRGR
FT                 GHRSHKAFIAIFVCLCSKATHLEVVSDYTTDAFLAALRRFTSRRGLCSDIY
FT                 SDCGTNFIGADRQIRELLRASSVNGSRIAHAAVTEGIRWHFNPPSAPHFGG
FT                 LWEAAVKSTKYHLRRVIGDTTLTYEEMSTLLAQVEACLNSRPLLALSDDLS
FT                 ALTPGHLLIGAPLLAIPEPSLTEKATSSSLSLVGSIFKKCVIIFGKGGHAS
FT                 TCIP"
XX
SQ   Sequence 5786 BP; 1391 A; 1672 C; 1436 G; 1285 T; 2 other;
     ttgttggtcc ttcgagccgg attcgccttc gccgattatt gctcgttcgg gagtaccatc        60
     gcgttcagtg cgcgtaatat ctaaaagaac aaagagagaa cgtaagtaag taaatcatga       120
     gtgaggaaat aaataccttg ctgaccgctc agagtgacat ccacggtcgc atggccagat       180
     cagtggcaaa tttaaagaag atgggtatgg ccaacatcac tctccacgcc gtcgaaaccc       240
     gcttagcgct tctcgatcaa ctgtggacga agttcgaaag acagcatgag cttattcgag       300
     cacattataa ggaagccttc gatgaaagtg agtacagtac gtctcaattc gccgattccg       360
     ctgaaattac ttacgtgcag cagcgtagcc tgttgaacga ttacctgaca aagctcaagg       420
     ctgagaagtc aaatacagct cctccgaatg aatcgggaaa cgatttttcc accaaatcgg       480
     cgctgccgcg tctgaaaatc cgatcatttt cgggcgcgtt tgaagactgg ccatcgtttc       540
     gagacatatt cttgtccatc gtcggtaata atccgtctat ctcaaacgta gagaagttcc       600
     atcacttaaa gcattgccta gaagggtccg ctgaagcatt gatacgtccg ttagccgtaa       660
     ccggagataa ttattctcgt gcgtgggcgc tgttgtgcaa gcattacgag aacaaaaaag       720
     agttgtcgcg ctccaatttt tgcacgttca ccgcagtgca gaagatgaaa agcgataccg       780
     ccgaggagct tagccgcatt tacaatgccg cgatcagtgc cgtgaacggt caagaaagca       840
     taggaagacc aattaattcg catggcttcg acttcttcaa tcacttcatc atcgagctct       900
     tcgacccgaa gactcgcctc gagtgggaat ctcacacgag cgattccacg gacttgccag       960
     atcacgatac cttgatggac ttcattacca agcgaactct gactctcaag gccgcaaaac      1020
     caaaggccac caaggtcttc ggagatccac cgcgaatcgc gaaatcgcac gtcgctaaac      1080
     gtgtagccga cgctcccggc tgtgttctgt gcaagggtag gcataatgta atgatgtgcg      1140
     aacaattcaa ggcgaaatcc gcatccgaac gaaagtccgt cgcggaaaca caccggttgt      1200
     gttacaactg tctcggttcg catccaatcg cgaagtgcca gtcaacgaag acgtgcttta      1260
     cgtgtaaggc gagacatcac acgctccttc acgaagcgta cgtcactgcg aagcccgccg      1320
     acgtaagcgc gttgaccgct gtacgccaag acgacgaatg caaggccatt ctgctcgcta      1380
     ccgcgagaat tactgtcgct gatcgccacg gggatccaca cccggttaga gtcttaatcg      1440
     atcaaggatc ggaagtatcc ttgatctccg aggcgctagt ccagcgctta cgcctgccgc      1500
     gatcccgcgc ggcaatctca attttcggaa tcggcggctc accctcgggt tcctgtcgcg      1560
     ggaaagtgtc tctcagtctc acctccagga tcaatggagc tcgagttacc gctttcatcc      1620
     tgccacgtct ttcgctgtat caaggagcag ctacgacatg caagactaca tggcctcaca      1680
     ttgaaggtct ccagctggct gatccgcaat tctcggccgc cgatcccatc gagctgttac      1740
     tcggcgcgga agtgtgctct atcattttac aagagggcct tcgaaagggc gatccgcata      1800
     ctcccgtcgc tcagtgcact ctgctcggat ggattctctc gggaggctgc ggcgagaatc      1860
     tctcagtgac tccacaccgc tccttccagt gcaccgccga ccacgagctg accacgctcg      1920
     tgcaacgttt ttgggagcaa gaaaaggaac cttccgcctc agtgtccatc acgccagacg      1980
     agcaacgatg cgaggaaatc tttgctcgaa ctcacagccg cacagctaca ggaaggtacg      2040
     tcgtgcgact gccatttgcc gcgtcgccaa cagcactcgg tgacacccgc caatcagccg      2100
     agcgactgct caccgccatg gagcgacggt gcgaacgtga cgttcggttc ggacgtctgt      2160
     accacgcctt tctaaaagaa tacgaagagt tggatcacat ggaattagtg ccaaggtcat      2220
     cggagtcaca agcaagatgc tacctacctc accacggagt gctccgagaa tcgagcgcgt      2280
     cgaccaaact cagggtggta ttcaacggat ctcagagtac aaggtccggt aagtcactaa      2340
     acactcagct gttagtcggc gctaacttgt tgccatcgct tgccgatgtg ctgacccggt      2400
     ggcggtggca ccgatacgcg atcgtgacgg acattgaaaa aatgtaccgc caaattcttg      2460
     tggcgcccga ggatagagat tatcaacgca ttctctggcg tcactcagtc agcgatccgg      2520
     ttcgcgagta tcggttaaac acagtgacat acggtctgtc gtgcgcgcca tttctcgcca      2580
     tccgcacact tcgtcagctc gccgacgacg aaaacgcaag atttccgcga ggttccgccg      2640
     tactgagaca cgactgctac gtcgacgaca tcgtgaccgg agcgtacact aaagacgagg      2700
     caatcgcgat acaatccgag ctccgtcagc tgtgcatggc gggcgggttc ccgctgaaaa      2760
     aatgggccgc caaccatcct gaaattctct tcggtattcc tgcggatcac tgtctcgcgg      2820
     attcgcggtc gtgggaacac gagagtcacg caacgctggg cttgcagtgg cacccggtcg      2880
     acgacacctt cacattttca attcgaagcc gcaccgttga aaaattcacc aagaggaagg      2940
     ttctctcgga gaccgcgcgt ttatttgatc cgctcggatg gttgacaccg gtagtgatcc      3000
     gcgcaaaaat cctgcttcag tcagcgtggt tgcaaaagct ggactgggac gccccgctcc      3060
     ctcaagcaga cgcctgccat tggagtcgtt tcctggagga actcccaaag cttgaacagc      3120
     ttcgaatcaa ccgctggttg aacacgggcg ccaaggacgc gagagtagag ctgcacggat      3180
     tcgccgacgc gtccgaacga gggtacgcag ccgtggtgta tcttcgtgtc atcagcgcta      3240
     acagtgtcaa cgttctcttg ctagcggcaa agagcaaggt cgctccgatc aagccagtgt      3300
     ccttgccgcg attggaactg tgcgccgccg ccttgctcac aaaattagtc gcacacacgc      3360
     gcactgttct aagcctgtcc acagctccag tcactctctg gtccgactcc aaggtcactc      3420
     tatactggat tcagggtcac gcctctcgat ggaagactta tgtggccaac cgcgtgtcca      3480
     tgatacagga ggcacttcca gaaggacaat ggcgtcatgt tcccggaaag gacaacccgg      3540
     ccgactgcgc ctctcggggg ataacaccag gagagcttat kgatcatcca ctctggtggt      3600
     caggcccctc ttggctgctc aaggacaact ccacctggcc tagcgcacaa cctgaagctc      3660
     cactggagga attgctcgag caacgcgtcc actctcgcac cgtcacgtca aaggttgtca      3720
     cggaaccgga gctcctcctc cgattctcct cacttcaccg gctcctgagg gtcacagcgt      3780
     ggtgtctacg ttggctgcgc ccaagaggga tgccaacgac ggaaggaagt ccggagtcga      3840
     cattgacacc cgacgagctc gacgccgcac ttggacgatg gatccgagca gtccaggcac      3900
     tgcactatgc gcacgaggtc actgccgcaa aagatcagcg cccgatgcca cctcgcagcc      3960
     agttacgggc cttgaatccc ttcatcgacg aacaaggagt gctgagagtc ggaggtcgcc      4020
     tgaagcacgc agttctctct ccggacgagc ggcatccgat gatcattccg ccgcactcac      4080
     acctcacacg cctcttgata tcatcatgtc accgccgaac actccatgga ggagtgcagt      4140
     tgactctggg cctgttgcga ctacgatatt ggatccctcg agggcgagcc atgacaaaat      4200
     actggttgca tcggtgcgtc acttgtacca gatggagagg agtcacgcca cagccgccaa      4260
     tgggtaacct tcctcaagga cgcgtaactc ctgcacgtcc attcctcaga accggcatcg      4320
     actatgccgg gccgatactc attcgcacga atcgaggacg tgggcaccgg tcccacaagg      4380
     ccttcatcgc aatttttgtg tgtctctgct ctaaagcgac gcatcttgag gtcgtttccg      4440
     attacacgac ggacgcattc ctggccgcac ttcgtcgatt cacatcacgg agaggactat      4500
     gctcggatat ctactccgac tgtggcacga acttcattgg cgccgaccga cagatacgag      4560
     agcttcttcg cgcatcttcc gtcaacggca gccgcatcgc gcatgctgct gtcacagaag      4620
     gaatccgatg gcacttcaac ccaccttccg cacctcactt cggaggcctc tgggaagcag      4680
     cagtaaagtc gacgaagtac catcttcgaa gagtaatcgg cgacaccacg ctcacctacg      4740
     aggagatgag cactctctta gctcaggtag aggcctgcct gaattctcgg cccttgctgg      4800
     cgttatctga cgacctctcc gcgctcactc caggacatct gctcatcgga gccccgctgc      4860
     tagccattcc agaaccgtcg ctcacagaga aggcaacgag ctcctctctc tctctcgttg      4920
     gcagcatctt caaaaaatgc gtgatcattt ttgggaaagg tggtcacgcg agtacctgca      4980
     ttccttgacc tcacgctcga agtggtgcaa ggtaagcact gctcctcaga ttggctcatt      5040
     gtgcctcata ctttcagaga catcaccacc aagtaaatgg cctctagctc gcatcacaaa      5100
     gctgcaccca ggagaggacg gtgtgacccg agtagcaact gttcgcacag cctcttccga      5160
     gctcatccga cctctagtca aattggtgat gctgcctgga cccgctgcct cgaccactct      5220
     acacgcggac tcgcaagagc aataaaaccg cacattgtat tagaccgcgc gatcttattc      5280
     aatgtactcg cgtcagtcaa cgcgcgtgta atcgcggtaa tattcgcgtt aatttcatct      5340
     acctttcgca attttcgatg atacgaatac aataaattta acaatttctt tgtaataata      5400
     tatttaacgc ttaatgcaat gtactatatt acattttcga gttttagttt tgaaattatt      5460
     ctgattacgt tctcaamcgt tgcgcaatca agactttgta atcacgattg tccgctaatt      5520
     cctttcaatt gatatcatag ctagatcaca tgaccgcgtc tgcgtcatta tatttcttaa      5580
     ataatttctt attatttaaa cttaaaacgt ctccgatcat gtgcaagcac aggcttccgc      5640
     gacaccgtgc gctgcacgcg caagcatcat cggtctgcgc cacctgaagc gccgcgatct      5700
     cccaaataat tagccgaact cgcgacatct gtacgcttgc cgagcgtgag cattaatttc      5760
     gtcactgcgt gacaaggcgg gcggga                                           5786
//
ID   BEL-2_AEc-LTR repbase;    DNA;    INV; 646 BP.
XX
AC   .
XX
DT   10-OCT-2011 (Rel. 19.03, Created)
DT   10-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AEc_;
KW   BEL-2_AEc-I; BEL-2_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-646
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 656-656 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 646 BP; 188 A; 171 C; 129 G; 158 T; 0 other;
     tgttcgagat gcatccaaaa acagttttcg cagattcggt gtacgtgcga catgcggatt        60
     ggaagcttct agaacaattt caaacgtttc tagaagtttc caaaaaacaa acttgacaat       120
     cacctcgtcg ataaagtcaa aaaatataat caaagccgca tgtcgtacgt acacaaaatc       180
     ccaaccgcta aaacggcaat caaattcggt cacagcgcac gcgcgctcgc gtgacgcgaa       240
     acgcgtaaca tactgacacc ccaatcagaa ttcctgattt ggcgggcgcg catggcaata       300
     gcgtaccgct tggccatcgc aatcgagaat tgccaatcgc tgcccgaatc atggggtcac       360
     ctcaaatttt ataatttttc gagaatctca taggcgattg aaaaaggaag cctttgttct       420
     acaaaataga taaaaggccg aatcgagcag cgatccttct tcttcgcttt tttcggtcaa       480
     agttaacgct ccgcaataag tgcaatcgcc tttgagacgc tccgccgcaa gaaaaccgcc       540
     gcgttcgact tgcgatcgaa gattcgcgta aatcgaactt tagctcaaaa cgccttctcg       600
     ctcaaattct ctctctatcg ctctcgcttt gtctcgctct cgaaca                      646
//
ID   BEL-2_AnFu-I repbase;    DNA;    INV; 5662 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5662
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 660-660 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..5516
FT                 /product="BEL-2_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MASPADLRSRRVTLEEKIHRAAAFAANFVPARDELKV
FT                 PFYAAEVERVSVEYDGVQQMIENGAAPEERALESHLRATMEDAIMAVRASL
FT                 QALMQPTPRVAIASSSNRVAASELRLPRISLPEFDGNEMQWATFRDTFEAL
FT                 IHNNTEVLDIQKFHYLRAALKGEAARLLDSIPLCSSNYSIAWKSLVDRYAN
FT                 EYLQKKRHLQAMFNMSRVQKESNAALHRLVDDFDRHVKMLHQLGEPTEQWS
FT                 TILEYVLCTKLPEETLKNWEDHASTLDTPDYATLIDFLQRKMRILESISMN
FT                 HQSTKESTHPNPVRRAPQQLSSCSSTTSNSKECPYCQHEHALSSCYKYCRL
FT                 PLSERIQIANEKKVCNNCLRKGHWARNCLTSSRCKHCRDRHHTLLHRSNEP
FT                 AGSKEGSPERPDSPKPKDRAYAQSLNVTETTERSEEVFLLTVRVNIVDADG
FT                 KEHSVRALLDSASQASLMTERIARLLQIKRSPANVKVLGAGKVSRNVRECV
FT                 FAEIRSKRQHFSCGVQFMLMDQITSHIPSENIAISHWCIPKGIELADPEFN
FT                 KSQPIDLLIGAKHYYSFFPSAARVHLGPDLPSLIDSVFGWIVAGSAMLHYP
FT                 ANSQTIISNAVCMMSLEESMERFWKIESLVMKDGYSPEERRCEQLFQTTTT
FT                 RDKDGRYIVRLPRHPDFGVRLGASKTSAKRRFELLEKRFVRNAKLKEEYHA
FT                 FMKEYYELGHMRLVRDELPEPVESYYLPHHPVFKESSTTTKIRVVFDGSSK
FT                 TTSGYSLNEALCVGPVVQDELLDQLLRFRTYRVALVGDIAKMYRQILLHPD
FT                 DRPLVRIFFRFSTQQPVQIYELNTVTYGLAPSSFLATRALIQLADDEGDAY
FT                 PRAGPALRKNFYVDDFIGGANSVEEATLLRDELAELLLKGGFELRKWTSNC
FT                 PDVLRGLDESQIGTTSKMSFASHEAVKTLGISWVPQEDWLLFEGLCQPDTD
FT                 IITKRSVLSTIAKMYDPLGMIAPIVIRAKMIMQEIWTYSCDWDDALPAGIV
FT                 SKWKQLQQEIQSLSQYRMERYVLVPGARKIELHTFSDASTAAYGACTYVRC
FT                 EEPGRVRVMLLASKSKVAPLKQLTVARLELCACVLAAHLHHRIKRAIATNI
FT                 DASWFWTDSAICTAWIRAPPTTWKTFVANRVAEIQHFTSDAKWRHIAGVEN
FT                 PADLVSRGMEVLEFNNSMAWRHGPAWLAKPEDVWPMSDPTEPSEAIQEKKV
FT                 LTAAVATCTNELFLRWSSFTRLVNVVGYCRRFIAMVPHLRRIRREGAMHSN
FT                 EGNAHSSNSASPKVLSVLERAAAEDALLRLAQRESFAEELSDLQTGKQIRR
FT                 QSQLRRLTPFLDKKGIIRVGGRLNLAQLPFQSKHPALLPKGHPLARLIAES
FT                 YHKLLLHGGGRLLLSSIRERFWPLNGRMLVKAVVRNCIRCIRHHPTAAEQH
FT                 TGQLPSGRLVPSRPFAVTGVDYAGPLYLKPAHRRAASLKAYLCVFVCFTTK
FT                 AVHLELVGDLSTEGFLAALRRFTARRGVPEHIHSDNGKNFEGARNELQELF
FT                 ARLGSETAQSVIAASCAEHGITWHMIPPRAPHFGGLWEAAVKTAKRHLFRQ
FT                 LGSTRLSFEGYYTVLHQIEAAMNSRPLLPLSDDPNDLAALTPSHFLVGSSM
FT                 TAIPDPELTHAHINTEQHLTKLQLLVQKFWKHWQKEYLQELQKDPRIAKNT
FT                 DNIQPGRMVIVVDELLPTTRWPLARVVEVHPGADGLVRVVTLRTPKGIIKR
FT                 PITKICPLPISSENVGA"
XX
SQ   Sequence 5662 BP; 1464 A; 1278 C; 1484 G; 1436 T; 0 other;
     tttggtgccg tgaccaggat atattctttc ggagtgaaat taatttcggt ttcttaaagt        60
     gatcattgct gcgtgttgca agattgcact attgcactga gtgtgaacac ttgtattatt       120
     tgttgaaagt tgtcagctat ctgtaacgta ctgtacgtgt accgtgattg ttgatcgtga       180
     ttattgactg ttggctgctt gtggaaattt gtggtgttga gttttttggt tgtgaactcg       240
     tcctcgcgaa ttttgtgttt tttgtcgttt gaccggccat cactgtgagc attggcgtcg       300
     gttcaatggc atcaccagcc gacttgcgtt ccagaagagt gacgttggag gagaagattc       360
     atcgtgctgc tgcatttgct gcaaatttcg ttccggcgcg cgacgagctt aaagtgcctt       420
     tttatgccgc ggaagttgaa cgagtttcag tcgaatacga cggtgtgcag cagatgattg       480
     aaaatggtgc tgcaccggag gaacgcgcgc ttgaaagcca tttacgcgcc acgatggagg       540
     atgctataat ggctgtgaga gcaagcctcc aagcactaat gcaaccgacg ccgcgcgtag       600
     ccatcgcgtc atcatcgaat cgcgttgcag cgtcggagct aagattgcca agaatttcgt       660
     tgcctgaatt cgacggtaat gaaatgcaat gggcaacgtt tcgtgacact tttgaagcac       720
     ttattcacaa caacaccgaa gtgctggata tccaaaagtt tcactatctg cgagcagcac       780
     tgaaaggaga agctgctagg ctgctggatt ccatcccgtt gtgttcctca aattactcca       840
     ttgcatggaa atcattggtc gatcgctatg ccaatgagta tttacaaaaa aagaggcatt       900
     tgcaagccat gttcaacatg tcgagagtgc aaaaggaatc caatgcagca ctgcataggc       960
     tggtcgatga tttcgacaga catgtgaaaa tgctccacca gttgggtgag ccaactgaac      1020
     agtggagcac tattctggag tatgtgttgt gcacaaaact gcctgaggaa acgttgaaga      1080
     actgggagga tcatgcttcc acgctcgata cacctgacta cgcaacgcta atagatttcc      1140
     tacaaagaaa aatgcggata ttagagtcca tatcgatgaa tcatcagtct acgaaggaaa      1200
     gtactcaccc gaatcccgtg cggcgcgccc cgcagcagct ttcttcctgc tcttccacta      1260
     cgagcaattc taaagagtgc ccatattgcc aacacgagca tgccctgagc agttgttaca      1320
     agtattgccg ccttccactg tctgagcgta ttcagattgc aaatgagaag aaggtttgca      1380
     ataactgctt acggaagggc cattgggcaa gaaattgtct tacgtcttcc cgatgcaagc      1440
     attgccgtga cagacatcac actcttttgc accgctccaa tgaaccagca ggatcgaaag      1500
     aagggtcacc ggaacgtccc gattcaccga agccgaagga tcgcgcatac gctcagtcgc      1560
     tcaacgttac tgagacgacg gagcgttcag aggaggtgtt tctgctaact gtgcgagtga      1620
     acatcgtaga tgctgacggc aaggagcatt cggtgcgtgc tcttctagac agtgcgtcgc      1680
     aagcgagcct gatgaccgaa aggattgcca gattgctgca gataaaacgg tctccagcta      1740
     acgtcaaagt attgggagct ggtaaggtat ctcgcaatgt tcgtgaatgt gtgtttgctg      1800
     agattcggtc gaaaagacag catttcagtt gtggcgtaca atttatgttg atggaccaaa      1860
     taacctctca tattccttca gagaacatag ctattagcca ctggtgtatc ccgaaaggaa      1920
     ttgagctagc tgatccggaa tttaataaat cacagccaat cgatttatta ataggcgcga      1980
     agcactatta ttcgtttttc cctagtgctg cacgagtgca cttgggtcct gaccttccat      2040
     cattgattga cagcgtgttt ggctggattg tagcgggttc ggcaatgttg cattaccctg      2100
     ctaattcgca gacaattatt tccaacgctg tttgcatgat gtcactggaa gaaagcatgg      2160
     aacggttttg gaaaatcgaa tctttggtaa tgaaagatgg atactcgccc gaagaacgca      2220
     gatgtgaaca gctatttcag acaaccacga cgagagataa ggatggtcgg tacatcgtcc      2280
     gtttgccgcg tcatcctgac tttggggtac gattaggtgc atccaaaaca agtgcaaaac      2340
     gtcgattcga gctgttggag aaacgtttcg ttagaaatgc caaactgaag gaagagtatc      2400
     acgcatttat gaaggagtac tacgagttgg ggcatatgcg tttggtccgc gatgagctgc      2460
     cggagccagt tgagtcgtac tatctgcccc accatcccgt gttcaaagag tcgagcacta      2520
     caacgaaaat cagagtcgtg tttgacggct cttcgaaaac tacaagcggt tattccctta      2580
     atgaggctct ctgtgtggga ccagtggtgc aggacgagct gcttgatcaa cttttgcgtt      2640
     ttcgcaccta cagagtggct ttggtaggcg acatagcaaa gatgtaccgg cagatattgc      2700
     ttcatcctga tgatcgtcca ttagtgcgaa tcttctttcg attttcgacg cagcaaccag      2760
     tccagattta tgagctgaat acggttacct atggactggc accatcatcg ttccttgcta      2820
     cgcgtgctct gattcagctg gcggatgatg agggtgacgc atacccacga gcgggtccgg      2880
     ctttgcgaaa gaacttctac gtagacgatt tcatcggagg agcgaactcg gtagaagagg      2940
     ctacgttgct acgagatgag ttagctgagt tgctacttaa aggcggattt gagctacgca      3000
     aatggacctc taattgtcct gatgttctgc gcggactcga tgagtcgcaa attggaacaa      3060
     cttccaagat gagcttcgct tcccatgaag ccgtgaagac acttgggatc agttgggttc      3120
     cacaagaaga ttggttgcta tttgaaggat tgtgtcaacc agataccgat atcatcacaa      3180
     agcgatctgt actttccacc atcgctaaaa tgtatgatcc gctgggaatg atagctccga      3240
     tagtcattcg ggcaaagatg ataatgcagg aaatatggac gtactcgtgt gattgggatg      3300
     atgccctgcc agcaggcatc gttagtaagt ggaagcagct tcaacaggag atccaatccc      3360
     tttcacagta ccgtatggaa agatacgtat tggttcccgg cgcacgtaag attgagctgc      3420
     acaccttttc cgatgcttca acagcagctt atggtgcatg cacgtatgta cggtgtgaag      3480
     agccgggacg agttcgggtg atgcttctag catctaagag taaggtagca cccttaaagc      3540
     aactaacggt tgccagacta gagttatgtg cctgcgtcct tgcagcacat ttgcaccatc      3600
     gaataaaaag ggcgattgct acgaacattg atgcgtcatg gttttggacc gattcagcta      3660
     tctgcacggc gtggattagg gcgcctccaa ccacgtggaa aacgtttgtc gccaaccgtg      3720
     tggctgagat acagcatttt acgagtgacg caaagtggcg acacatagct ggagtcgaaa      3780
     atcccgcaga tctggtgtca cgcgggatgg aagtgttgga attcaacaac agcatggcat      3840
     ggagacatgg gccagcatgg ttggcgaaac cagaggatgt ttggcctatg tctgatccaa      3900
     cggagccttc tgaggcaatt caagagaaga aggtcttaac agccgccgtt gcgacgtgta      3960
     ccaacgagct gttcttgcgt tggtcatcat tcactcgcct ggtaaatgtc gtaggttatt      4020
     gtcgacgttt cattgccatg gtgccacatc tgcggcgcat aagacgtgaa ggagccatgc      4080
     attccaacga aggcaatgcg cattccagta attccgcatc tccgaaggtg ttgagcgttc      4140
     ttgagcgagc agcagcggaa gacgctttat taaggcttgc tcagcgtgag tctttcgcgg      4200
     aagagttgag tgatctgcaa acggggaaac aaattagaag gcagtcacag ttacgtcgac      4260
     ttaccccatt tttggacaaa aagggcatca tcagagttgg tggccgattg aacttggcgc      4320
     agctaccctt tcagtcgaag catcccgcgt tgctgcctaa gggccaccca ctggctcgat      4380
     taattgcaga gagctaccac aagttgctgc tacatggtgg aggacgtttg ttgctgtcat      4440
     ccataaggga aagattttgg cccttgaacg gaagaatgtt ggtgaaagcc gtggtgagga      4500
     attgcatccg atgtattcgt catcatccta cggcagcaga gcagcatact ggtcaactgc      4560
     cctctggtag attagtcccg agtcgtccgt ttgcggtcac aggagtggat tacgcaggcc      4620
     cattgtatct aaagcctgcg catcggcggg ctgcatcgct gaaggcatat ttgtgtgtct      4680
     ttgtgtgttt cacaaccaag gcggttcatc tagagctagt gggtgatctt tcaaccgaag      4740
     ggtttctcgc tgctctacgg agatttacgg cgaggagagg tgttccggag cacatccatt      4800
     cggacaacgg taaaaacttc gaaggtgcca ggaacgagct gcaggaactt tttgcgagat      4860
     tgggaagtga gactgcacag agtgtcatcg cagcgtcgtg cgcggaacat ggaatcactt      4920
     ggcatatgat tccaccgaga gctccccatt ttggcggcct ttgggaagct gcggtaaaaa      4980
     ctgccaagcg tcacctgttt cgtcaactgg gcagtacacg attatcgttt gaaggctact      5040
     acaccgttct gcatcaaatc gaggcagcaa tgaactctcg tccgctgctg ccactttccg      5100
     acgatcctaa tgatttggcc gcactaacgc cttctcattt tttagtaggt tcatcgatga      5160
     cggcgatacc agatccggaa ctaacgcacg cacacataaa caccgaacag cacttgacca      5220
     aacttcaact actggttcag aagttttgga aacactggca gaaggaatac ttacaagaac      5280
     tgcagaagga cccacgcatc gctaagaaca cggataacat tcaaccgggg cgaatggtta      5340
     tcgtagtgga cgagctgctg ccaactactc gctggccgct tgcacgagtc gtagaggttc      5400
     accccggcgc ggatggatta gtacgcgtag tcacgttgcg aacacctaag ggaattataa      5460
     aacgtccgat cacgaagatc tgtcccttac caatatccag tgaaaatgta ggagcataag      5520
     gaagtcaggg aatatcactt gcacaaagat cacgaatcac ttggtactta acacttttat      5580
     ccgtttgcga taccacgcgg tgttttgaca taggcgagca aggataagtt tgtttgttga      5640
     tggtacatca aggcgaggag ta                                               5662
//
ID   BEL-2_AnFu-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-272
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 708-708 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 272 BP; 83 A; 53 C; 59 G; 77 T; 0 other;
     tgtttacgtt tcgtatgcgt tacactcatt tgacagttga aatttattat tccgattaat        60
     gcattattgt tttcaccggg gtagcgttac gaacgcagag gttagttgtg ttagtgtaag       120
     gaccgttagg gctaagaacc attgcgaaaa atcactgcac ttgtaataaa atacgtacgc       180
     cgaacggtca agcgagaaac cgcgctccag attaattttt caccgttccg aaagaaaact       240
     aaaattcaca acgtagggat cgatcgcgaa ca                                     272
//
ID   BEL-2_BTa-I repbase;    DNA;    INV; 5403 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5403
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 590-590 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(118..3459,3434..4420,4424..4636,4656..5336)
FT                 /product="BEL-2_BTa-I_1p"
FT                 /translation="MEETDVAARLKTLRRQRGNIQRHITTFTKKLDAWKDD
FT                 ESTRDSDLLVQSLESLQKTFDKFDSIQDEIEGLEEPVDAETDQRTIMQEHY
FT                 DIAVARARKYLREIVINTPERDLGVKTHVSTPPESLSGHSTQVKLPTISLP
FT                 EFDGSLEGWASFFDLFSSLIDQNEKLNSVKKLFYLKSALKGKAADLLKNVS
FT                 TIESNYQLALDLLKDKFDCPRRVARTHFSNLREYPKLQKDTPKALGDLVDV
FT                 FRVNLRALKNLDAPIEHWSIPIIDLILTKIGEKTAYEWEIKLTDNKMPHYD
FT                 HLLNYLEKRANSMHLAGKLEAGENSKSHSHRKDSRFTEQKRSALVVTNENK
FT                 QQCRCCDKEFHPLYLCPRFKKLGTPDRRDYAKKLGACFNCLKYKVGNKESH
FT                 LVGQCPIKNSTCRNCTGTHHTSLCLSTKNLSSEKTQQNHSDHSQDGREGSA
FT                 HVSGSAPQISLVATDVDHSSKDSVPTVLLGSALIEILGRDGQYHKIHSVVD
FT                 SAASSSFISHAAAQRVGLKYRRTYEPVSGIGGGETGVRGQLTCYIRSRFNP
FT                 EPVLPTDTMVIKKIVDLPKAYITEHVRQHFAHLPLADPHFGTAREVEFLIG
FT                 ADIFPFIFTGEKKMGPSGTLSALNSIFGYVIIGRLGNRAHGHPGQVALITT
FT                 PGSGESANTDTLLRKFWEIEETPTKVPAHPDDVIAETMFKEQHYRLPSGRY
FT                 VVPILLRECAPPLGDSKTLALQRLHSMERRLEKSSVLSTRYADFLDEYESL
FT                 THMEPVALENHGKAAYYIPHHAVFREDSTTTKLRVVFDASQKSRSGISLND
FT                 ILYSGPKLQNDVFDAITRFRLHQKVFTCDISKMFRQILIRPDQRKYQHIFW
FT                 RRNGQVLEFVLNTVTYGLTSSPFLSQRVLVQLTIDEGVNFPLASRVLCRDI
FT                 FVDDLATGAPDAKLLLELQHQIIGLLRAGCFEPQKWASNCPEILKNVPPEH
FT                 CVTSLDLTDISAAISKILGIHWNAKLDFFYYVVKTSTHIITKRNILSHVAR
FT                 IFDPVGLISPVVFKAKSIMQKLWIEGLAWDDPLPQVLEAEWLEFYKGLPSI
FT                 GLLQIERCVTLPDATSHALVGFSDASQLGYAAAVYLRSQSDNAAKVSLIGA
FT                 KTRVAPLAPKHELLRKTISIPKLELCGAQLLSTLLIHLKEQLSDVIEIHNI
FT                 VAFTDSQVVLDWIKTLPCKLKTFEANRVTYILERLEPSAWKYVPSELNPSD
FT                 LGSRGCFPDELVNHPMWFTGPPFLSDPIDEWPNFAETTRKKSSVVLIVINP
FT                 TLWEQLIPQYSNWNHLKRVIGEQSLTFEQLNTVFVKIEALLNSRPLCHLSS
FT                 DASEIDVLTPGHFLIGAPLLAVPEYDFSDTATNRLSRWQLTQKITQQFWKI
FT                 WSRDYLHTLIQRSKWQQRQEDLKIGSAVLIADETAPTSWKKGIVDELHHGK
FT                 DGIVRVVTVRITRGTLKRPAVKIYPLPNQEHSHSHSPAAATHGPMHRFTAG
FT                 CRTHTLLHLKPINVTLPTVTFKPSQKKRRETTLDSSFNSHSSSSNSPRVSS
FT                 STAQDQLSTHRNVRVSSSFLCFYCSVRACAMEKSSWYENFTLRNMRGDFDV
FT                 DWHAFDQPRRKITLQEWRERNATYESSIVHEENILDMMTPWSEIEEPQPNR
FT                 SESEPNSRPVNWSLTPLESRRLFDAHWPLIQKCRQRDSTSDQFSIQTVRSS
FT                 EGQNGGEDNAEHLMTISGSQVEDATCTAGIQRQGKRKPTGRKCRKRQQAKR
FT                 RMLFQHRKKMERKERNGSLTL"
XX
SQ   Sequence 5403 BP; 1540 A; 1339 C; 1204 G; 1320 T; 0 other;
     tggtccctcg ggccggatac aacatttgag cttgagccgg cattcacttg acttacttag        60
     tcaaattaga atcaactttc atacggattt tggagttttt gcaaaagcta ttcaactatg       120
     gaggaaacag atgtagctgc acgcctcaag acactgcgcc gtcagagagg aaacattcag       180
     cgccacatca cgaccttcac caagaaactt gacgcttgga aagacgatga atccactaga       240
     gactcagatt tgttggtaca aagtcttgaa tctcttcaaa aaaccttcga caaattcgac       300
     tcaatacagg atgagatcga agggctcgag gagcccgtcg atgcagaaac agatcaacgg       360
     acaattatgc aggaacacta cgatattgct gtcgcacgcg ctcggaaata cttacgcgaa       420
     attgtcataa atacaccgga acgtgattta ggtgtaaaaa cgcatgtttc tacaccccct       480
     gaatcactga gtggacattc aacacaagtc aaactaccaa ctatttcatt gcctgaattt       540
     gatgggtcct tagaaggatg ggcgtcattc ttcgacctat tttcgtctct aattgatcag       600
     aacgaaaagt taaattctgt gaaaaaactt ttttatttga agtcggcact aaaaggaaaa       660
     gccgctgatc tactgaaaaa cgtctctact atagagagca attatcagct ggctttagac       720
     ttattgaaag ataagtttga ctgtcctcgt cgtgttgcac gtacacattt ttcgaatctg       780
     cgagaatatc caaaattgca gaaggacacg cctaaagcct tgggtgacct ggtagatgtt       840
     tttagagtaa atttgcgagc tttaaaaaat ctagatgcac ccatcgaaca ttggagcatt       900
     ccaattattg atttgatttt gacgaaaatc ggtgaaaaaa cagcctatga atgggaaatc       960
     aaattgaccg ataataaaat gccgcattat gatcacttgc tcaattattt ggaaaaacgc      1020
     gcaaactcca tgcatcttgc aggcaaattg gaagccggtg aaaactctaa gtcacactct      1080
     caccgcaagg acagccgctt caccgagcaa aaacgaagtg cactggttgt taccaatgaa      1140
     aataagcaac agtgccgctg ttgtgataag gaatttcacc ccctttatct ttgtccacgc      1200
     ttcaaaaaac ttgggacacc tgatcgaaga gattacgcca agaagcttgg cgcgtgcttc      1260
     aactgtttga aatacaaggt aggcaacaag gaaagccact tggtaggcca atgtccgata      1320
     aaaaatagta cttgccgaaa ttgcaccggt actcatcata cttcgctctg cttatccacg      1380
     aaaaatcttt cgtccgaaaa gacacagcaa aatcactcag atcacagcca agatgggcgg      1440
     gaggggagcg cacatgtttc cggctccgca ccccaaatat cgctggtggc gaccgacgtt      1500
     gaccactcct caaaagattc cgttcccacg gtgctcctcg gttcagcact gatcgaaatc      1560
     ttaggcaggg atggtcagta tcataaaatt cacagcgtgg ttgacagcgc tgcgtcatca      1620
     tcgttcatct cacatgcagc agcgcagagg gttggtctca aataccgacg cacatatgaa      1680
     cctgtctcag gaattggggg aggcgagact ggggtaagag gtcaactcac ttgctacatt      1740
     cgctcccgct tcaaccctga gccagtgttg ccaacggata cgatggtcat caagaaaata      1800
     gttgatttac cgaaggccta catcactgag catgtacggc aacatttcgc acacttacca      1860
     ctggcagatc ctcacttcgg cactgcacgc gaagttgagt ttctgattgg cgccgacatt      1920
     ttcccattca ttttcactgg ggaaaagaaa atgggacctt ccgggacttt aagcgctctc      1980
     aacagcattt tcggctacgt cattatcggt aggcttggca accgcgctca cggtcacccg      2040
     ggtcaagtgg cactaattac cacgcccggc tccggtgagt ctgctaacac cgacaccctc      2100
     cttcgaaaat tctgggaaat cgaggagacc ccgaccaagg tgcctgcgca cccggatgac      2160
     gtcatcgccg agacaatgtt caaggaacaa cattaccgtt tgccaagtgg ccgttatgtt      2220
     gtacccattt tattgcgaga gtgcgctccg ccactgggcg actcaaaaac acttgcactt      2280
     cagcggctcc actcaatgga acgccgactt gaaaaatcat cggtgttaag cacaaggtat      2340
     gccgattttt tggatgaata tgaatcactt acgcacatgg agcccgttgc cttggaaaat      2400
     catggaaagg cggcctatta tatacctcat catgcagtct ttcgcgagga cagcaccacg      2460
     accaaactgc gcgttgtttt tgatgcgtct caaaaatctc gttccggcat atcgctaaac      2520
     gacattttat actcagggcc gaaactacaa aatgatgtat ttgatgccat tacaaggttc      2580
     aggctgcatc aaaaggtgtt tacctgcgac atttctaaaa tgttccgaca gatcctgatc      2640
     agacctgatc agcgcaaata tcaacacata ttctggcgtc gaaacggaca agttttagaa      2700
     ttcgttttga ataccgtgac ttacggtctc acatcctcgc cgtttctctc acagcgtgtg      2760
     ctagtacagt tgacaatcga cgagggtgta aacttcccct tggcttcaag ggttctttgc      2820
     agggatattt ttgtcgacga tctagcaacg ggcgcacccg acgcgaaact cctgctcgag      2880
     ctgcaacatc agattattgg gctcctgaga gcaggctgtt ttgagcccca aaaatgggca      2940
     tccaactgcc ccgaaatctt gaaaaatgtg ccaccggaac actgcgtcac ttcattggac      3000
     ctaactgata tttcagcggc catttcaaaa attctcggca ttcactggaa tgcaaaattg      3060
     gactttttct actatgtggt gaaaacttca acacatatca ttacaaaacg gaatattttg      3120
     tcacatgttg ctagaatatt cgaccctgtt gggttaattt cgccagttgt ttttaaggcg      3180
     aagagcatca tgcaaaaact ttggatagag ggcctggcat gggacgaccc actgccacag      3240
     gttttggagg cggagtggtt ggagttttac aagggactgc cgtcaatcgg cctacttcaa      3300
     attgagaggt gcgtcacctt gcctgacgct acttcgcacg cccttgttgg cttttcagac      3360
     gcctcacaac ttggctacgc tgcggccgtc tacttgaggt ctcagtctga caatgcagcc      3420
     aaggtgtctc tgattggcgc caaaacacga gttgctccgt aagacaatct cgatccctaa      3480
     actagaatta tgtggagcac aattattgtc tactctccta atccacttga aggagcaact      3540
     tagtgacgtc attgaaattc ataatattgt cgcttttact gactctcagg tagttctaga      3600
     ctggatcaaa actttgcctt gcaaattgaa gaccttcgaa gccaacagag ttacctacat      3660
     actcgagagg ctcgaaccat ccgcatggaa atatgttcct tcggagttga atcccagtga      3720
     cttagggtca cgtgggtgtt ttcccgacga attagtaaac cacccgatgt ggtttacggg      3780
     accgccattt ttatctgatc ccatagatga atggcctaat tttgctgaga ccactagaaa      3840
     aaagtctagc gtggttttga tagtgattaa tcccaccctt tgggaacagt tgataccgca      3900
     atactcgaac tggaatcatt tgaagcgtgt cataggagag cagtccttga cttttgaaca      3960
     actcaacacg gtgttcgtca aaattgaggc tctactgaac tccaggccat tgtgccatct      4020
     ttcctctgac gcctctgaaa tcgacgtttt gactccaggc cattttctga tcggcgcccc      4080
     cttactagcc gtacccgagt atgacttttc tgacacagca acgaaccgct tgtctcgctg      4140
     gcagttgacg caaaaaatca cgcagcagtt ttggaaaatt tggtcaagag actaccttca      4200
     tactttaata cagcgatcaa aatggcaaca acgccaggaa gacttgaaaa ttggctcagc      4260
     ggtcctcatt gctgatgaaa cagcgcctac aagctggaaa aaaggcatcg ttgacgaact      4320
     tcaccacggg aaggacggca ttgtcagggt agtcactgtc cgaattactc ggggcaccct      4380
     gaagcgtccg gccgtaaaaa tttatccgtt gccgaaccag tgagagcatt ctcactccca      4440
     ctcccccgct gccgcaacac atggtcccat gcaccggttt actgcgggat gcaggactca      4500
     cactctgctc catctgaaac ccataaatgt cactttaccc acggtcactt ttaagcctag      4560
     tcaaaaaaag agaagagaaa ctaccctgga ctcctcgttt aattctcact cgtccagctc      4620
     aaattcacca cgtgtgtgaa aaagaagacc tatgatcatc gtcaacggct caggaccagc      4680
     tcagtaccca ccgaaacgtc cgagtgtcct catctttcct gtgtttttac tgttctgtgc      4740
     gcgcttgtgc gatggaaaag tcaagttggt acgagaactt caccttgcgt aacatgcgag      4800
     gagattttga tgtggactgg catgctttcg atcagccacg ccgaaaaatc acgctccagg      4860
     agtggcggga gcgtaacgca acgtatgaat cctcaatagt gcacgaagaa aacatactcg      4920
     acatgatgac gccctggtcc gaaattgagg agcctcaacc caatcgaagt gaaagtgaac      4980
     ccaactctag gcctgtgaac tggtcattaa cccctctaga atcgcgacga ctatttgatg      5040
     cgcactggcc gttaatccag aaatgccgcc aacgtgactc aacctccgat cagttctcca      5100
     ttcaaacagt gagatcctcg gaaggtcaaa acggtggaga agacaacgct gaacacctca      5160
     tgacaatcag cggtagccaa gtcgaagacg ccacatgcac cgccgggatc caacgtcaag      5220
     ggaagaggaa gcccacagga agaaaatgcc gaaaaagaca acaagcaaaa agaagaatgc      5280
     tttttcaaca tagaaaaaag atggaacgaa aagagagaaa cggatcgctg accctctaaa      5340
     gctcacatcc gtaagaaaca aactcattat tggcgaaccc ggacgtgttc gcgggcggga      5400
     gga                                                                    5403
//
ID   BEL-2_BTa-LTR repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-616
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 568-568 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 616 BP; 129 A; 193 C; 143 G; 151 T; 0 other;
     tgttgaatat tgtatagaga tttaaagaat ttttatttcg cacttttttt gtagttcagg        60
     caactcggtg gtggacggtt gtatccagcc ccccccccct ctctcacact cctgccggga       120
     cctccgcgtc cctgcagctc cacaaactca cccccactct agccttgact ggagtgcgca       180
     tgcgctgtgc gccgaggcac cagcccttgg ccgcgccggg cccacccttg gcccgtcagt       240
     tcccgtcgtc accctcttgg agaaacacgc gagctcctgg aggcacaagt ccactgccga       300
     gttagcctat ctgcttgatg tactaactcc tgaaataaat tgatgaaact tacacttgcc       360
     ttcagcatta tcgatccacc tttacaggtc cgatactcct cgaagcatcc agcacaaatc       420
     tcagcacgct gcttggtgcg ctgccgatct gcgctgactc tcgagtaaag tatcgcagcc       480
     cgaacccagc acgcctgcgg gtgcgctgat aattcgcgct gaccggatat aggaaccggg       540
     cggaaatcca acggggggtt tttctctaag tcaaattctc accgttgagt gcgattttcg       600
     gtcggatcct caaaca                                                       616
//
ID   BEL-2_CoFl-I repbase;    DNA;    INV; 6856 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6856
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2309-2309 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1067..6448
FT                 /product="BEL-2_CoFl-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 and ribonuclease H."
FT                 /translation="MDNLYEVQVKLFNKIKGSFTNFKKLGQVKMTKGQADS
FT                 RLQQLRDTFEQFKSTHDNIMNIKPLPTTHDYFKNECFEVGEDTFYSVQGDF
FT                 NDFFNSLNDHSNPTGTLPPTNANGSSFQSFSSLPPIDLPSFDGDFASWENF
FT                 RDVYRAIVHRKQELPAIIKYQHLRAHLKGEALDLIKNIPLSEESYIQAWDT
FT                 ITRYYDNKRRLINTYTTTILSCQAMRGSSCSEMKRISKEMISSVDSLISLE
FT                 RAVGDADIFIALVVSRFDFQTNKDWQKMLGSSSNPPTLGQLRDFISAQIIT
FT                 MESFPCKPVNKIVNIRATTPFKNMGSSSSKPISGVTAHQTVVSDSIVCQFC
FT                 NQKHHLVSCDSFKSQEWSNKWKFLKSHRLCVNCFGPHLNRECSGNSKCSHC
FT                 NQKHHTIMHRGDKSSSTSVSAKNKQTKSVNNLTNSFTVQNQAQISSESSVN
FT                 VQSCSSNKIVSPKVLLATARVFVYATDGSRILVRALIDQCSQSCLITKSLC
FT                 DMLHLKPRSVSTTLSGVGGLISMDASKSVAFKFRPHFESGFEHFVDALVVP
FT                 KISSYEPPLGSRLANLDYGKDVILADPEFYSLDKIDILLDASVHAIIIGQE
FT                 VRKLAPDYPIASASQIGWLLSGQMPFGSGSNLSQKSLVMVNVEETQLNELV
FT                 QRFWIIEEPLKPRKILSKDEIACDEIFINSHSRDSTGRYVVRLPFKVNPKT
FT                 LPELQRQSYQSALAVFHHLERRFVRDKSLHDAYSAFMSDYISLGHMKELPV
FT                 DKLAACYLPHHGVFKNNKLRVVFNGSASCNSSSSLNSILHSGENLLLSLFD
FT                 IIIRWRFYQFVFTTDIEKMFRQVLVAPEDHEFQAILWRPNASVPIRSYVLN
FT                 TVTYGLTSSPYLATRVLRQLAKDYTESHPIAAQVLCEDFYVDDCLSGSHTL
FT                 EDAKIKCQQLIELCELGQFPLRKWSANSSELIAELPVSHLSSKPKILSDDE
FT                 PIVSVLGLYWNPSSDEFRFCVTVNVDTPVRWTKRTLLAQLSKFFDPLGWLA
FT                 PTIIFAKILFQSLWLLQVSWDDSLSPDLVKTWTHWLNETPLLNEVRIPRWN
FT                 HFSLDCESLELHGFADASKNAYAAAVYLRVVREGEIFVHLQLAKTKVAPIK
FT                 ALSIPRLELCAAELLSTVVSHFVDVNSLKEIPVHMWSDSRNVLYWLNGLPS
FT                 KWPVFIANRCSKIHELTPYAKWHYITSKQNPADVASRGVLPGQLLNQILWF
FT                 QGPKILHELHPNYPEFGVEMIAPTSINVNSSMPSVNSFVNSSESFYMTLLT
FT                 RCSKWERLLRVTAYCLRFTYRCLHKVKQKNSYLPIAGDLKPPLQASLQFID
FT                 LYSFIEVDSIHLSTSEIDCARLCLVYQHQQCHFSAEFKVLTQNQDRSLEDS
FT                 LPLLRSSRLLNLTPFINCGLIRVGGRLSRALLDDDAKHPLILTDRDQLTFM
FT                 LIDYYHRLTLHGGVQLTIITLRQTYWIVNGRRTVRAELTRCITCKRYKSKP
FT                 QTQLMGDLPCSRVTQSPPFQKSGIDYAGPFPIRLSKHKGKGTFKGYIAVFI
FT                 CMSTRAVHLEVVEDYTKEAFIAAFHRFISRRGHCTDLFSDHGTNFIGADTE
FT                 LKRMLVERSRDPNFAYELGKSGTQWHFIPASAPHFGGLWESAVRSAKHHLK
FT                 RVVGDQILTVVEFSTLLCRIEACLNSRPLARLNDDSSELDPLTPAHFLIMR
FT                 SSFLVPEPDISTEKVSPLKRWKLVTQSLQVFWKRWSLEYLSTLQSRCKWLN
FT                 PQRSVKPGDLVLIKNESSPPGKWPLGMVVEVYKDAKSLVRVAKIRTVSSSF
FT                 VRPIHKLILLRTVSELESGHNNN"
XX
SQ   Sequence 6856 BP; 1810 A; 1369 C; 1386 G; 2289 T; 2 other;
     tggtccttcg agccggatgt ggggaggtga aatataggtg taggacattt tccttttgtg        60
     taagacacgt ggtcgtttta tcggccatct tggcttcttt tcacgttctt ctcgggcgac       120
     gaggctgacg cggtcaacgc gccggcgcgt agtccgtacg ccacacacac acacttatag       180
     ccacatctct ttctctcttt tctttgttcg tttgtcgtcg gggtgcgtcc gctgttgacc       240
     tgctgctcgt gctttgtcgt cgtcagcgtg tgctgctgcc tgcctctgca ggctattgga       300
     caacaccgct gcctgctcgg cttcgtcgtc agcgtgtgct gctgcccgtc tgcagkccat       360
     tggacaacag ctgctgctgc tggtcaggtt cgtcatcagc gtgtgctgct gcctgcctct       420
     gcaggctatt ggacaacacc gctgctgctg ctggcttcac gggtcctttc gtcgtcagcg       480
     tgtgctgctg cctgcctctg caggctattg tgacaaaccg ctgctgctgc tcgctttggg       540
     tcgtcatcag cgtgtgctgc tgcctgcctc tgcaggctat tggacaacac cgctgctgct       600
     gctcgtgctt tggtcgtcgt cagcgtgtgc tgctgcctgc ctctgcaggc tattgtgaca       660
     acaccgctgc tgctgctggc tccacgggtc ctttcgtcgt cagcgtgtgc tgctgcctgc       720
     ctctgcaggc tattgagtcg gcaccgctgc tgtcaagtcc tgcaggtctt tcgaactcaa       780
     cataactacg aatacttggt cctgtttaca cggtttgtaa aattgtatat tttggtttgt       840
     aacatcagtt ccttatagtt tttcgttttt ttgtttaccg attgacttga atatattttt       900
     gcgaacttaa ctttatgtaa gcacttgtaa aaattaagaa cactaccgtc gtttagcgtt       960
     attgttgaat tagttagcct ttgtctgact caagtttggc tacggtgcgc ggtttgtatt      1020
     tatttattga atatttatta cttgaattga aatttacctt atcaaaatgg ataaccttta      1080
     tgaggtacaa gttaaactgt ttaacaaaat taaaggttcc tttacaaact ttaagaaact      1140
     tggccaggtg aaaatgacca agggtcaggc tgactctagg cttcaacaac tcagagatac      1200
     ttttgaacag tttaaatcca ctcatgataa cattatgaat ataaaacctt tacccacaac      1260
     tcatgattat tttaaaaatg agtgctttga agtgggagag gatacctttt attcagttca      1320
     gggtgatttt aacgattttt tcaattcgct taatgatcat tcgaatccaa caggcacctt      1380
     acctcctact aatgccaatg gtagttcgtt tcagagtttc tcttctttac ctccaataga      1440
     cttgccatcc tttgatggtg attttgctag ttgggagaat tttcgcgatg tttatagggc      1500
     tatagtccat aggaagcaag aattaccagc tattattaaa tatcaacatc ttagggcgca      1560
     tctaaagggt gaagctttag acctcattaa aaatataccc ttgtctgaag agagttatat      1620
     acaggcctgg gataccataa cccggtatta tgataataaa cgtcgtctca ttaatacgta      1680
     tacaactact attctcagtt gtcaagctat gagaggcagt tcttgctctg aaatgaagcg      1740
     catatctaag gagatgataa gttctgttga ttccttgata tctttagaga gagcagtagg      1800
     agatgctgac atatttatcg ctcttgtagt tagtagattt gattttcaaa cgaacaagga      1860
     ttggcaaaaa atgttaggta gtagcagtaa tcctcctact ttaggtcaac tacgagactt      1920
     catttcggca caaatcatta caatggaatc gtttccttgt aaacctgtaa ataagattgt      1980
     aaatattcgc gcaactactc cgtttaaaaa tatgggatct tctagtagta agcctatatc      2040
     tggtgttact gcacatcaga cagttgtttc agattccatt gtttgccaat tttgtaatca      2100
     aaaacatcat cttgtctctt gtgattcatt taaatcacag gagtggagca ataaatggaa      2160
     atttctgaag tcccatcgtc tctgtgttaa ttgttttggt cctcacctta atcgagagtg      2220
     ctctggtaat agtaagtgtt cacactgcaa ccaaaagcat cacaccatta tgcacagagg      2280
     ggataagtcc agctctacat ctgtctctgc taaaaataag caaacaaaat ctgtaaataa      2340
     cttgacgaac tcctttactg tacaaaacca agctcagatt tcttcagagt ctagtgtgaa      2400
     tgtacagtca tgtagtagta ataaaatcgt ctcacccaag gtgcttttgg ctactgctcg      2460
     tgttttcgtg tatgccactg atggatctcg catattggta cgagctctca ttgatcagtg      2520
     ctcacagagt tgtcttatta ctaaatctct ctgtgatatg ctgcatttga aaccgagatc      2580
     agttagtacg actctgtcag gagtgggtgg actgatttcc atggacgcta gtaaatcagt      2640
     tgctttcaaa tttaggcctc attttgagtc tggttttgag cactttgttg atgcgttagt      2700
     cgtgccgaaa atttcttcct acgaaccacc tctaggtagt cgtttggcaa atttagatta      2760
     tgggaaggat gtaattctag cagatccaga attttacagt ttagataaaa ttgatatttt      2820
     gttagatgca tctgtccatg caattattat cggtcaggaa gttcgcaaat tagcccctga      2880
     ctacccaatt gcctctgctt cgcaaattgg ttggttgtta tcgggtcaga tgccctttgg      2940
     ttcaggatcc aacttgtcac aaaaatcatt agttatggtt aatgttgagg aaactcagct      3000
     taatgagtta gttcagcggt tttggattat tgaggaacct ctcaagcctc gaaaaatttt      3060
     gagtaaagat gagatagcct gtgatgagat tttcatcaat tcacactctc gagattctac      3120
     cggcaggtat gttgtacggc ttcctttcaa agttaatcct aaaactcttc ctgaactaca      3180
     aagacaatcg taccaatcag cgttggcagt ttttcaccat ttagaacgga ggtttgtgag      3240
     agataagtct ctacatgatg cttattcagc attcatgtct gattatatat ctttgggcca      3300
     tatgaaggaa ttaccggttg acaaattagc agcttgttat ctacctcatc atggagtttt      3360
     taaaaacaac aagttgcgag tagtttttaa tggatcagct tcttgtaatt ctagttcctc      3420
     gctcaattcc attttacact ctggagagaa tttgttgctt agcttatttg atattattat      3480
     cagatggaga ttttaccaat tcgtctttac tactgacatt gagaaaatgt tccgacaagt      3540
     tttggtagct cctgaagatc atgagtttca ggccatttta tggagaccta atgcatctgt      3600
     acctattcga tcttacgtct taaacactgt tacatatggt ttgacaagtt caccttactt      3660
     ggccacacgt gttttaagac aacttgccaa ggattacact gaatctcatc ctatagctgc      3720
     tcaagttctt tgtgaagact tctatgtgga tgattgtttg tctggtagcc atacgttaga      3780
     agatgctaag attaaatgtc agcaactaat tgaattgtgt gaattaggtc aatttccact      3840
     gagaaaatgg tcagccaatt catctgagtt gatagctgag ttaccagtaa gccacttatc      3900
     tagtaagcca aagatcctaa gtgatgatga accaattgtt tctgttttag gcttgtattg      3960
     gaatcctagt agtgacgagt ttcgattttg cgttacagta aacgttgaca cacccgttcg      4020
     ctggaccaaa cgtactttat tagcgcagtt gtcaaaattt tttgaccctt taggatggtt      4080
     ggctccaacg ataatttttg ctaaaatact atttcaatct ctttggttgt tgcaagtgtc      4140
     ttgggatgat tctctgtcac ctgatttggt taaaacctgg actcattggt taaatgaaac      4200
     acctttgttg aacgaagttc gaatacctag atggaatcat ttttcgctag attgtgaatc      4260
     tctcgaactt catggttttg ccgacgcttc taaaaacgcc tatgcagcgg ctgtttattt      4320
     acgcgttgta cgcgagggtg agatttttgt acatcttcaa ttagccaaaa cgaaagtagc      4380
     tccgattaaa gcgctaagta ttccaagact agagctatgt gctgcagaat tgttatccac      4440
     agtagttagt catttcgttg atgttaattc attgaaagaa ataccagttc acatgtggtc      4500
     cgattctagg aatgtactat attggctcaa tggacttcct tccaaatggc cagttttcat      4560
     agctaatagg tgttcaaaga ttcatgaatt gactccatat gctaagtggc attatatcac      4620
     gtcaaagcaa aatccagctg atgtagcttc tagaggtgtt cttccgggcc aattgctgaa      4680
     tcaaatatta tggtttcagg gccctaagat tcttcatgaa ttgcacccta attatccaga      4740
     gtttggagta gaaatgattg ccccaacctc tataaatgta aatagttcaa tgccttctgt      4800
     aaatagtttt gtaaatagtt ctgagtcctt ttatatgact ctattaactc gttgttccaa      4860
     gtgggaacgg ttgctaagag taacagcata ttgccttcgt tttacatacc gttgtttaca      4920
     taaagttaaa caaaagaatt catatttacc tatagctgga gatcttaagc cccctttaca      4980
     ggctagtttg cagtttatag acttgtattc ttttattgaa gttgactcga ttcacctttc      5040
     aacatcagaa attgattgtg ctagactgtg tctagtgtat cagcatcaac aatgtcactt      5100
     ttccgctgag ttcaaggtac taactcaaaa tcaagatcgt agtttagaag atagcttacc      5160
     actacttcga tctagccgtt tgcttaatct tacgccgttt ataaactgcg gattgataag      5220
     agttgggggt agattgagta gagccctact tgatgatgat gccaaacatc ccttgatact      5280
     aacagataga gatcagttga catttatgct tattgactat tatcaccgat taactttaca      5340
     tggtggagtg cagttgacga ttattacact ccgtcaaacg tactggattg taaatggtag      5400
     acggactgta agagctgagc ttactcgttg catcacttgt aaaagatata agtctaaacc      5460
     acaaactcag ttaatgggag acttgccttg ttctcgtgtt actcagagtc ctccttttca      5520
     aaaatcaggg atcgattatg ctggcccctt tccaatacgt ttgtcaaaac acaagggtaa      5580
     aggaactttc aagggttaca ttgcagtttt catctgcatg tcaactcgtg cagtacatct      5640
     tgaagttgtg gaggattata caaaggaggc atttatagct gcctttcaca gatttatttc      5700
     tagacgtggc cactgcactg atttattcag tgatcatggc acgaatttca tcggtgctga      5760
     tactgagttg aaaagaatgt tggtagaacg tagtcgtgac cctaattttg cctatgaatt      5820
     aggtaaatca ggtacacagt ggcactttat tcctgcttct gctccacatt ttgggggttt      5880
     atgggaatca gcagtcagat ccgctaaaca tcatttgaag cgtgtagtcg gcgatcagat      5940
     tttgacagta gttgaatttt ctactttatt gtgtagaata gaggcatgcc tcaactctcg      6000
     gcccttggct cgccttaatg atgattcctc tgagcttgat cctcttaccc ctgctcattt      6060
     tttgatcatg aggtcttcat ttcttgtgcc agagcccgat atttctactg aaaaggtatc      6120
     gccacttaaa cgctggaagc tagtgacaca atctctccaa gtcttctgga aaaggtggtc      6180
     acttgaatac ctttctactt tacaaagtcg ttgcaagtgg ttgaatcctc aacgctcggt      6240
     taagcctggt gatctcgtgc tcataaaaaa cgagtcttct ccacctggta aatggccttt      6300
     aggcatggtt gttgaagtct ataaggatgc caagtctctc gtcagagtcg ccaagattag      6360
     aaccgtttca tctagttttg taaggccaat acacaaacta atattattgc gtaccgtatc      6420
     tgagcttgag tcaggacaca ataataatta gkcttattta gatcaattta ttttctttca      6480
     tttactatta tgattattaa atctcatatc taaaggttac aaaccttgcg aaaatatata      6540
     taaaattatc agtaatttgt ttattatgtt tttttatttt atttttcgaa ttatttgcta      6600
     ttgtacgtgg aaagcgttcc actgctttat tcacacggta cttaattgta tattatccat      6660
     ccgcctgtcc atcaaccttg ggactatgta aaacatcagt attactgatt gttaccggct      6720
     gaatgtcatt atataataaa aaaaaacttt cattatttcg aatttttgta agtggaatgc      6780
     gatccaccct tttgtccttc taagacttgt tattgatata cattcgttac acttctgtct      6840
     atcaaccttg ggacta                                                      6856
//
ID   BEL-2_CoFl-LTR repbase;    DNA;    INV; 558 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-558
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2279-2279 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 558 BP; 153 A; 105 C; 97 G; 202 T; 1 other;
     tgtgcaacat cagtaacatt gtactgatgt aaatagaaaa tttagtttat gagatttgaa        60
     atctcgcgct ttaggatatt ctcttaccta taagggccaa tcataagcgt gcgcgcgtct       120
     attaatacac caatagactc tgtttatact tacctttgtc cagcagcttg ctgctgctgc       180
     ggttwtcgtt agtcagcctc aaacgccctt ttcggtaagt cgctttgcgc tcgtgtttat       240
     aattttcacg tgtatcgttt tatgtaagat tattgtaacg aaaacgattc acaatttcga       300
     ttgacacgta atttctccgt ctgactcaaa aattagttct gccttttttt tatcttgcat       360
     gtaagcaagt attatgactt gttaaagtag aattaaatag agagattgtt ttttataata       420
     aacggctaaa gtgtttaaaa gtgtgttgtg catttattat tgtgtccttc tattacatcc       480
     gttttcacgc tcccccaaat ccggcgtgtg atacaaaaaa tatacagtcc actatcttac       540
     tgagttcgat ttcgaaca                                                     558
//
ID   BEL-2_CQ-I  repbase;    DNA;    INV; 6449 BP.
XX
AC   AAWU01001625;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_CQ_;
KW   BEL-2_CQ-LTR; BEL-2_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6449
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 157-157 (2011).
XX
DR   Genome; AAWU01001625; Positions    2980    9428.
XX
CC   Positions [5496-6056] - Integrase core
CC   'GATTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..6449
FT                 /product="BEL-2_CQ-I_1p"
FT                 /translation="MPPKMDPNRPRLRVSKRKRNCFECEQLDTKEMVQCDT
FT                 CDSWYHYECAGVTSAIIDVDWDCKWCGENNETIPRDPENSIAPQLPYLLEP
FT                 EPPHQKQVSEDQRSVRSVGVGSMAASSSGRSRSARMRELELKRLEEDYRLR
FT                 RNYLDKRFAIMRAYDCEESDDDSLVEKGSQVAEWIQKTDQIGSRNKPGSAL
FT                 PAFPEQPPSNSQPAEQQASGQGQQAGAFQNPPAVLNQSSIIRASQTPLGHL
FT                 IGNTRDLTLEERPPRYLFHSTGYNGVPGFQVANTTEPQTNPQLATSAAQGY
FT                 TQLAGHGGVLFQAPIVTSNPPAPSRGLPIARNQLLEPAIQRSNPPIGQRTY
FT                 PDWSRIQASTNGNRQIIPETRSTPNPPCYQSQINQQPNLPNNTLDLAGQGL
FT                 RQEPSSFQYSERASDQIQQGLMGTTQVRPNVLGAMSGQANGRTAYTGTNSQ
FT                 QAGLLNQGGNRNAVSDRLVEEPFQENPPRYLNESLDNRGDETVYLLSRSQM
FT                 AARQAVPKDLPDFSGLPHEWPLFYAMYNSSTQMCGFSNEENMLRLRKCLKG
FT                 RALTQVGSELLHPNSVASVMSTLKMLYGKPETIIQAVIENVRGLPSPRVEK
FT                 LETLVDFALSVKNLCATIQACEIGDYMYSSSLRYELVQRLPPTLQLEWAKA
FT                 SRGILTPTLFQFNTWLYHMAEDASAVMRAQIGSYKTDSKPRHKKESLLHVH
FT                 VESDDGEIADAQTGSNTLPTCPVCKGKCSLTAKCPRFVERSVDARWETIRE
FT                 LKLCRKCLQQHNNFCKQKRQCGVDGCTYLHHPLLHANKKAALTSTVTSPPA
FT                 ECENSNVNVHQERTSEVLFRFVPVVLYGPSKEVHTYAFIDDGSELTLLEQG
FT                 LADELGVSGETNPLCLKWTGDTKRIEPKSQKVNLEVSGTSATSKKFSISNA
FT                 RTVDKLKLRPQTLVVDDLRNRFHHLQGLPIESYRDAAPRILIGVDHAKIGH
FT                 VRKSREGKTKEPIAIKTCLGWCVYGCIATNLSGTSTVNHHALDICQCNQEN
FT                 GDYLHTAMKEYFSLDSMGVLTPERLLMSTEDERSLQLLKNLTRRRGDRYES
FT                 GLLWKYDGVRLPNSRAMALKRWECLERRMLNDPTLGEALNSKIADYLDKGY
FT                 IRRLTDAELVIERPRVWFLPVFPVVNPNKPAKTRLVWDAAAKAHDVSLNSV
FT                 LLKGPDYLTSLLSVLIQFREHRIAVCGDLREMYHQVLMRDEDQHCQRFFWG
FT                 RKDGTPEPNTYVMQVMTFGACCSPSTAQYVKNQHAKQYENEFPAAVRAIVD
FT                 QHYVDDMLVSIETEEEAATLAHDVKWIHKQGGFEMRNWLSNSKTVLATLQE
FT                 SPQAEKNFNVSDGLPTEKILGMWWDTQQDCFTFKLSTRCEEELLSGRRRPT
FT                 KREALRMLMLMYDPCGLIAHFLMYLKVLLQEIWRSGIGWNDKIGEKEFEKW
FT                 LLWIKVLPGVRNVRVQRCYRKHTSINAEVQLHTFVDASENGFAAVVYLRFQ
FT                 EGENIECAIVAAKTRVAPLKFLSIPRSELQAAVLGVRLANTVQRSLNIKVS
FT                 QRFFHTDSRDVCCWLNSDHRRYSQFVAFRVSEILESSDAKEWHWISTKQNV
FT                 ADLGTKWKGLPDLNPNSPWFRGPSFLWKPESEWPAASRQYGSTDEELRPHL
FT                 LAHIVNLESLLQPEEFSTWRTLKRRTAMLFRQANNWRRRASKQQPVRGPLT
FT                 QKEHLEAEHHLYRVAQADVFADEVASLSSSVSTKKKLSKSSSIYRACPFLD
FT                 ERNVLRVQGRTGACKYVDVDATNPVILPREHAITKLVVAQFHRNFHHQNHE
FT                 TVINELRQHYYIPQLKAVYRKVRKDCQQCKNDGAKPCPPIMADLPESRLAA
FT                 FTRPFTHMGVDYFGPVTVSIGRRTEKRWGVLATCLTTRAIHLQVAYSLSTD
FT                 SCIMALRNIFSRRGTPSVIYSDRGTNFQGTAKMVEEVVRKIDQDKLVAEFT
FT                 SNHTEWKFNPPASPHMGGAWERLVRTVKQNLNKVLGTRVVSAEVLENALNE
FT                 VENIVNSRPLTNIPVDGDLSPVLTPNHFLVQSSNGLKPFVLYDDSSRALRN
FT                 NYELSQILANYFWKQWVRDYLPTITRRTKWFTSTKPIEVDDIVIIADPRSP
FT                 RNCWPKGRVIATKIAADGQVRSATVQTASGGIYERPAVSLAVLDVGVEANA
FT                 HRMSLTHSGAE"
XX
SQ   Sequence 6449 BP; 1788 A; 1707 C; 1615 G; 1339 T; 0 other;
     aattacaaat ttcgtttaac cgtacctaca cgatgccgcc gaagatggat ccaaatcgac        60
     cccgcctgcg ggtttctaaa agaaaacgga actgttttga gtgcgagcaa ctagacacca       120
     aggaaatggt ccagtgcgat acctgtgaca gctggtacca ctacgagtgc gcgggagtga       180
     cgtcggccat catcgatgtg gattgggact gcaagtggtg tggggagaac aacgaaacca       240
     tccctcgtga tcccgagaac tccattgcac ctcaactccc gtacttgctg gagccagagc       300
     cgcctcacca gaaacaagtt tctgaagatc aacgctccgt ccgatctgta ggagttggct       360
     ccatggccgc gtcctcgtct ggaaggagca ggtcagcaag aatgcgtgaa ctggagctga       420
     aaaggctgga ggaggactat cgtctacgga gaaactatct tgacaaaaga tttgccatta       480
     tgagggctta tgattgtgaa gaaagcgatg atgattcttt agttgaaaag gggtcacaag       540
     tcgcagagtg gatccagaaa actgatcaga tcggtagcag aaacaaacct ggttctgcgc       600
     ttccagcgtt ccctgaacag ccgccgagca actcgcagcc tgcggaacaa caagcttcag       660
     gtcaaggaca gcaagctgga gctttccaaa acccaccggc agttttgaac cagtcttcaa       720
     taattcgtgc atcacaaact ccgttaggcc atctcatcgg caatacaaga gaccttaccc       780
     tagaggaacg tccgccgcgt tatctctttc attctaccgg ttacaatggt gtccccggtt       840
     tccaagttgc gaacaccacc gaaccacaga ccaaccccca acttgccaca agtgctgctc       900
     aagggtacac acaactcgct ggacatggtg gcgtgttgtt tcaagcccca atcgtcactt       960
     caaacccgcc tgcaccatca agagggctcc ctatagcccg gaaccagcta cttgaacccg      1020
     cgatacaacg ctcaaatccg ccgattggac agcgtaccta tccggactgg tcccgcatcc      1080
     aagcctctac aaacggaaac cgccaaatca tcccagagac acgttcgaca cctaaccccc      1140
     cgtgttatca gagccagatc aaccagcagc cgaaccttcc caacaacaca ctcgatctgg      1200
     ccggccaggg tctcaggcag gagccaagca gtttccagta cagcgaacgt gcttcggatc      1260
     aaattcagca aggactgatg ggcacgacac aagtaaggcc gaacgtcctc ggagccatgt      1320
     ctggtcaagc aaacggtcgt acagcttata ccggtaccaa cagtcagcaa gcaggattac      1380
     taaatcaagg agggaaccga aacgctgtta gcgatcgact tgttgaagag ccgtttcagg      1440
     aaaacccccc gcgctattta aacgaatccc tggataacag gggtgacgaa acagtatacc      1500
     tgctgagcag aagtcaaatg gccgcccgtc aggcagtccc gaaggatctt ccggatttta      1560
     gcggcttacc ccacgaatgg ccgctgttct atgccatgta caattcctca acgcagatgt      1620
     gtggattctc caatgaagaa aatatgctcc gcttgcgaaa gtgcctaaag ggaagagcac      1680
     tcactcaagt aggatctgaa ctgttgcacc ctaacagtgt agcaagcgtg atgtcgaccc      1740
     tcaagatgct gtacggcaaa cctgaaacaa ttatccaagc ggttattgag aacgtgagag      1800
     gcctcccatc gcccagagta gagaaacttg aaactttagt tgacttcgct ctctctgtca      1860
     aaaatctttg tgctacaatc caagcttgcg aaataggtga ctacatgtac agctcatcgc      1920
     tgcggtacga gcttgtgcaa cgtttaccac caactctaca actagaatgg gccaaagctt      1980
     cgcgcggaat tctgactccg actctgtttc aatttaacac gtggctctac cacatggccg      2040
     aagatgctag cgcggtcatg agagctcaga ttggcagtta caaaactgac tcgaaaccac      2100
     gccacaagaa ggagagcctt ctgcacgtgc acgtggaatc agacgatgga gagatagctg      2160
     acgctcaaac tggctcaaac acactaccca cgtgccccgt ttgcaaagga aagtgctctt      2220
     taactgctaa gtgtccacga ttcgttgaac gcagtgtgga tgccaggtgg gaaaccattc      2280
     gtgagctgaa attgtgcaga aaatgtcttc agcagcacaa taacttctgt aagcagaaaa      2340
     ggcagtgtgg agtcgacgga tgtacttatt tgcatcaccc actgctacac gccaacaaaa      2400
     aggcagcctt gaccagtacg gttacctccc ctccggcaga gtgtgaaaac tctaacgtca      2460
     acgtccacca ggaaaggaca agcgaggtac tgttccggtt cgttccggtg gtcttgtacg      2520
     gtccgtcgaa ggaagttcat acgtacgcct tcattgatga cggctctgaa ctgacacttc      2580
     tagaacaggg cttggcagac gaactaggag tatccggaga aacaaaccct ctatgcttga      2640
     aatggaccgg agatacgaag aggatcgagc ccaagtcaca aaaagttaac ttggaggttt      2700
     ccggaacatc cgcaacatca aagaagttct caatctccaa cgcccgtacc gtcgacaaac      2760
     tcaagctgcg gccacaaacg ttggtcgtcg atgacttgcg gaatcgtttc caccacttgc      2820
     aaggacttcc tatcgagtcg tatcgagatg cagcaccacg aatcctgatt ggtgtagacc      2880
     acgccaagat cggacatgtt aggaagagtc gggagggtaa gaccaaggaa cccatagcga      2940
     tcaaaacgtg cctgggttgg tgcgtgtacg gatgcatagc tacaaacttg tctggaacca      3000
     gtaccgtcaa ccaccacgcg cttgatattt gccagtgcaa tcaagaaaac ggagattatt      3060
     tacacaccgc tatgaaggaa tacttctcgc tcgacagtat gggagttctc acacctgaac      3120
     ggctgctgat gtcgacagaa gatgagcgat ccctgcagtt gctgaaaaat ctaacacgca      3180
     gaagaggtga ccgctacgag tctggtctac tctggaagta cgacggtgtt cgtcttccga      3240
     acagtagagc tatggcgttg aaacgctggg agtgtctgga gcgccggatg ctcaacgacc      3300
     caaccctagg tgaagcactc aacagcaaga ttgccgatta ccttgacaaa ggctacatcc      3360
     gtcgacttac cgatgccgag ctcgtcattg aacgcccaag agtttggttc ctcccagttt      3420
     ttcctgtcgt aaaccctaac aagccggcga aaaccagatt agtctgggat gcggctgcca      3480
     aagctcacga tgtctcgctc aactccgtcc ttttgaaagg acccgattac ctgacgtcgc      3540
     tactaagtgt gctgattcaa tttcgagagc atcggattgc cgtttgcggt gacttaaggg      3600
     agatgtacca tcaggtgctc atgcgagatg aagaccagca ttgccagcgc ttcttttggg      3660
     gacgaaagga cggaacaccc gaaccaaaca cctacgtcat gcaggtaatg accttcggag      3720
     cctgctgctc acctagcacg gcgcaatacg tcaaaaatca acacgcaaag caatacgaaa      3780
     acgagtttcc agcagccgtt cgcgcgatcg tagatcaaca ctatgtagat gacatgctcg      3840
     tcagcataga aacagaggaa gaagctgcaa cactcgcaca cgacgtcaag tggattcaca      3900
     aacaaggcgg ctttgagatg aggaattggc tgtcaaactc aaaaaccgtg ctggccacgc      3960
     ttcaagagag tcctcaagcc gagaagaact tcaacgtcag cgatggtttg ccaacggaaa      4020
     aaattctcgg catgtggtgg gatacgcaac aggactgctt tacgttcaag ctatcaacaa      4080
     ggtgcgagga ggagctgctg tccggacggc gacgaccaac caaacgagag gctctccgaa      4140
     tgttgatgct gatgtatgat ccttgcgggc ttatcgcgca ctttctgatg tacctgaaag      4200
     ttctgctgca ggaaatttgg cggtcaggta tcggctggaa cgacaagatt ggggaaaaag      4260
     agttcgagaa gtggttgctt tggattaaag ttctacccgg agtgcgaaat gtcagagttc      4320
     agcgatgcta ccgaaaacac acgtccatca acgccgaagt ccagctacat acgtttgtcg      4380
     acgcaagcga gaacggattt gccgccgtag tttacctacg atttcaagaa ggagaaaaca      4440
     tcgaatgcgc gatcgtggcc gcaaagacga gggtggcccc actgaagttc ctgtcgattc      4500
     cgcggtctga actacaagca gctgtcctcg gcgtgcggct ggcaaacaca gttcagcgtt      4560
     cattgaacat taaggtgagt cagcgctttt ttcataccga ctccagagac gtgtgctgct      4620
     ggttgaactc tgaccaccga aggtacagcc agttcgtcgc cttccgcgtt agcgaaatct      4680
     tggagagcag cgatgcgaag gaatggcatt ggatatcaac caagcagaac gtagcagatc      4740
     taggaacgaa gtggaaagga ctaccggatc tcaacccaaa cagcccctgg ttccgcggac      4800
     catcgttcct gtggaagccc gaatcagaat ggcctgctgc gtcgcgacaa tacggatcaa      4860
     cagacgaaga actccgcccc cacctgttgg cgcacatagt aaatcttgaa tcgctactac      4920
     aaccggagga gttttcaacc tggagaacat tgaaacggcg aacggcgatg ctctttcgac      4980
     aagccaacaa ttggagacgg cgcgcttcaa aacaacagcc agtgcgcgga ccgctcacac      5040
     aaaaggaaca cttggaagct gaacatcatc tgtatcgcgt ggctcaagct gacgtatttg      5100
     cggatgaagt agccagtctt agttcaagcg tgagtacaaa gaaaaaattg tcgaaatcca      5160
     gcagtatcta tcgcgcctgt ccatttctgg acgaaagaaa tgtccttcgg gttcaaggcc      5220
     gaacgggtgc ctgcaagtac gtcgacgtag atgcaaccaa cccggtgatt ctgccacgag      5280
     agcacgcgat cacgaaactt gtcgtagccc aatttcatcg caactttcac catcaaaacc      5340
     acgaaaccgt aattaatgag ctacggcaac actactacat cccgcagttg aaagcagttt      5400
     accggaaggt gcgaaaagac tgccaacaat gcaaaaatga tggagcaaag ccctgcccac      5460
     cgataatggc cgacctcccg gaatcgcgac tagctgcatt cacccggccg ttcacccaca      5520
     tgggcgtgga ctacttcggc ccggtaacgg tatctatcgg ccgccgcacg gagaagcgat      5580
     ggggcgttct tgctacgtgc ctaactacgc gggctatcca tctccaggtt gcctactcac      5640
     tttccacgga ctcttgcata atggctttgc ggaacatttt cagcagacgg ggaactccat      5700
     cggttatcta cagcgatcgc gggaccaact ttcaaggcac cgcaaagatg gtagaagagg      5760
     ttgttcgaaa aatcgaccaa gacaagctcg tggccgaatt cacctcgaat catactgaat      5820
     ggaagttcaa ccctcccgca tcccctcaca tgggaggagc gtgggaacgc cttgtacgaa      5880
     ctgtgaagca gaacttgaac aaggtgctag gtactagagt cgtgtccgca gaagtactcg      5940
     agaacgcgtt gaacgaggtg gaaaatattg tcaattcgcg accgttgacg aacatcccgg      6000
     tagacggtga tctctcccca gtgctgacac ccaaccactt tcttgttcag tcctcaaacg      6060
     gcctgaaacc attcgtactc tacgatgata gctcccgggc tttacgaaac aattacgagc      6120
     tatcgcaaat tctggccaac tacttctgga aacagtgggt tcgggattat ctgccaacta      6180
     taacacggag aactaaatgg ttcacatcga caaaacccat cgaggtcgat gacatcgtca      6240
     tcatcgccga tccgaggagc ccacgtaact gttggcccaa aggcagagtc atagctacca      6300
     agatcgctgc agatggacaa gtacgatcag cgacagtgca gacggccagc ggcgggatct      6360
     acgagagacc agctgtgagc cttgctgtac tcgacgttgg cgttgaagcg aatgcgcatc      6420
     ggatgtcctt aacgcattcc ggggcggag                                        6449
//
ID   BEL-2_CQ-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   AAWU01001625;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_CQ_;
KW   BEL-2_CQ-I; BEL-2_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-595
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 158-158 (2011).
XX
DR   Genome; AAWU01001625; Positions    2385    2979.
XX
SQ   Sequence 595 BP; 193 A; 140 C; 124 G; 138 T; 0 other;
     tgtaagatgc gccacgacga ccagcgcacc ccaagctgcc cttcgtcgac gcgcgacgat        60
     tccccacgcc cgctgcacca cgaagggatt gttttgttcc aagggtcagc ttaaagtcac       120
     gaaaagcaga tcaaccgcgc gcgctagaag aaaagattaa ttgtacccag aaagtgaacc       180
     tagaagcgtc aagttagagc gtccagttgt gcacgaaact aaaattggat ataatctgga       240
     ttgaattgag gtctacttac ggagaaatta ggaagtaact aagttgcgaa aagtagaact       300
     cgagcagttc aaacgattag tacgctattc tacgactaca cacaagtaca gagcgcctgg       360
     agattaaagc tcgcggaatg ttgctatctt taattccctg taactcaccc gcaaattgaa       420
     cagaattgtt gtttggtagt aagctctacg agagcactaa acgtaagacc tagctgataa       480
     acattgatcg caagccatta actcatatgc ttcatctcca ggaaatttgt aactcgcctt       540
     ctaccgcaag aataaagtta acaaatttaa atcgctttcg ctacaaccaa caaca            595
//
ID   BEL-2_DAn-I repbase;    DNA;    INV; 5549 BP.
XX
AC   AAPP01018419;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DAn_;
KW   BEL-2_DAn-LTR; BEL-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5549
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018419; Positions   10183    4635.
XX
CC   Positions [4578-5168] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1634..3007
FT                 /product="BEL-2_DAn-I_1p"
FT                 /translation="MYWQPATDDFKFGIKYHRVPRIVMTGERVPTKREFLS
FT                 LVMSTFDPIGFLSCYMVTAKLLMREIWRKGVNWDEPLPADLAAAFEDWRQG
FT                 MRKIEEFRCPRYYFGGGRVRMLQLHIFVDSSQSAFAAAAYWRATYENGDVQ
FT                 AHFISSKTKCAPMRTMSIPRLELQAAVLGTRLMDTVKQEHGVAISSCVLWT
FT                 DSKTVLHWISSTHRRYKQFVGNRVAEILESTEASQWRWIPSGENVADDATR
FT                 PRKAVDLSIGSRWLSGPPFLRGPEESWPRSSEGWIPPTPDEEEMKCEFALV
FT                 MVNFISLQRFSKYNRLLRSTAWVLRFIRRCRGLRYDGEDHGLTSMECAEAE
FT                 RALVRQSQREAFAENDQGKAAKGSRLHGLSPYFDEDGVMRASGRIDDATCV
FT                 PYSARRPIILCHDEGLAEMIVQHHHERMCHQNTEATIGAIRQSASSPGHQG
FT                 IPLRGRLRRQFHQ"
FT   CDS           join(3246..4487,4491..5549)
FT                 /product="BEL-2_DAn-I_2p"
FT                 /translation="MTGERVPTKREFLSLVMSTFDPIGFLSCYMVTAKLLM
FT                 REIWRKGVNWDEPLPADLAAAFEDWRQGMRKIEEFRCPRYYFGGGRVRMLQ
FT                 LHIFVDSSQSAFAAAAYENGDENGDVQAHFISSKTKCAPMRTMSIPRLELQ
FT                 AAVLGTRLMDTVKQEHGVAISSCVLWTDSKTVLHWISSTHRRYKQFVGNRV
FT                 AEILESTEASQWRWIPSGENVADDATRPRKAVDLSIGSRWLSGPPFLRGPE
FT                 ESWPRSSEGWIPPTPDEEEMKCEFALVMVNFISLQRFSKYNRLLRSTAWVL
FT                 RFIRRCRGLRYDGEDHGLTSMECAEAERALVRQSQREAFAENDQGKAAKGS
FT                 RLHGLSPYFDEDGVMRASGRIDDATCVPYSARRPIILCHDEGLAEMIVQHH
FT                 HERMCHQNTEATIGAIRQKFITNLRRLLRNVVSKCNVCKLRRARPTQPEMG
FT                 PLPEDRLEANGWPFKFTGLDYFGPLLVTVGRRTEKRWVALFTCLTTRAIHL
FT                 EMAHDLSTDSCIIAMRNFMCRRGPVVRIRSDNGKNFVGADREARRFSEVFE
FT                 PAQIQGELSSKGVEWVFNCPANPAEGGAWERMVQCVKKVLAHTMKELAPKE
FT                 HVLENLLIEAESIVNSRPLTHLPVTVDQEAPLTPNDLLKGAPDVPDLPKVD
FT                 GQEVVRCATRKQWRIARMMRDRFWKRWVHEYLPTLVRRERWCKHVEPIRRG
FT                 DLVFICDPAIPRREWKRGVVEEVFTGRDGVPRRAAVRTNDRAKTIMRPASK
FT                 LAVLDVVNAAASRGWG"
XX
SQ   Sequence 5549 BP; 1402 A; 1359 C; 1722 G; 1066 T; 0 other;
     atgttcatct gccacgggag ccgatacaca acttggaggt atctgcacca tcgcgcctgc        60
     catatgaagt ggcgacggcg agcatacctg gatggacgcc acgtagattg cctgatcttc       120
     ccgatttcga gggtcagcca gaggaatggc caatatccca gtgcgcgttc atggaggcaa       180
     cggcagccta ccagtgtaca caattggaaa tcaaccagcg gctagtgaaa gccctaaagg       240
     gcgatgcccg cgaggcagtg aagccgttgc tcatccatcc cagcaacgta gaagctgtta       300
     tggagcaacc gaatcgaagg atcctgcacg cgaatagtgt tcgcgaggag aagcggtatg       360
     ccgaccgccc cagattttgc cctatatgcg agggacaaca ccagatcagg gactgcaaag       420
     aattcaacag cgtctctacg acgacgcgga tcgagtgtgc gaggaagttg aggctatgcc       480
     tctcgtgtct ggagcccgga cacatgtccc ggttctgcag gaagagccgc ggatgcaacg       540
     tctacggatg acaaatgagg catcactacc ttctccacga gtcacctgga catcctagac       600
     ggctgtacgt tacagaggga gccgcaggag cgaccagaga agcagtcagg accgacggct       660
     gttcaaagac agcagcaaac ggagaggaat gccacgacca gtggattcca acgagaggag       720
     ccgtcccacg tcagccgcag ttatagacgc ggggcgtgag caggatgaaa ggtgatcgac       780
     gtgtgacctc caggaattga cgcatcggaa cccgagctgc gttgattcga ttggatgcca       840
     cctactattc cggattctac ccgtgacgtt gtacggggag aatacgcagg tcgacaccta       900
     tgctgaatga aggatcgtct gtcacgctca tcgatgacga actcatccgc agaacctgaa       960
     aggcgagagt cgccaactga acgtgcaatg gtttggtggg aaatctgcca aagagcacac      1020
     gaaagtggtc agcctgcaga tcagtgcagc gggaaagcca aagccctatg ggctgaagaa      1080
     cgtgtacgga gtagccaatt tgaaccttcc gatgcagagc atgcgtcggg atgaattaaa      1140
     ggcagtgaag gcgaatgcac gcctgcctgt gaagccgtac aacaatgcga cgccgaggat      1200
     cctaattgga ctggatcatg cgcatcttgg aatacccctc agaacaagaa gcaatggatc      1260
     tggaggacca tttgcagcag ccaccgcact tggaagggtg gtgtatggac cggtgagcgg      1320
     aaaggtgagc tcatcgcttt agagttcgtg cctcctagcc gtgaagaccg tgaatgcctc      1380
     gcagtacagc agcacggacc cgcgagcagc cctggccatc aaggaatacc actacgtgga      1440
     ctactacgtc gacagtttca ccagcgaaga agaagctatc gccgtttcga cacgggtgag      1500
     agaaattcat gcagatgcag gatttgactt gtgtcgattt acttccagtt cgccaagtgt      1560
     ggtcagaacg ttgaacccac ttgaatccat cgctagcgtc agatagaccg aagctgagga      1620
     gaaggtacta ggaatgtact ggcagccggc tacagatgac ttcaagttcg gcatcaaata      1680
     tcatcgagtc ccgagaatcg tgatgacagg ggaacgcgtc cctaccaaga gggagttcct      1740
     aagcctggtc atgtctacgt tcgacccgat tggattcctg agctgctaca tggtgactgc      1800
     caaattgcta atgagggaga tttggcggaa aggagtcaac tgggacgagc cgctaccagc      1860
     tgatttggcc gcagcctttg aggattggcg gcaaggaatg aggaagatcg aagagttccg      1920
     atgtccgcgc tactacttcg gcggtggacg cgtgcggatg ctacagctgc acatctttgt      1980
     ggactccagt cagtcggcgt tcgcagcagc ggcctattgg cgggccactt acgagaacgg      2040
     agacgtgcag gcgcatttca taagctccaa gacgaaatgc gctccgatga ggactatgtc      2100
     gatcccgcga ctggaacttc aggcagcagt attgggcacg agactgatgg acaccgtcaa      2160
     gcaagagcac ggtgtggcga tcagcagctg cgtattatgg acggactcta agactgtgtt      2220
     gcactggata agcagcaccc accggagata caaacagttc gtcggtaatc gagtggcgga      2280
     gatcttggaa tccacggagg cgtcccagtg gagatggatt ccgtctggcg aaaacgtggc      2340
     agacgacgcg acgaggccgc gcaaggccgt ggacctgagc atcggttcga gatggctaag      2400
     cggtccacca tttctacgag gaccagagga gagctggcca agatcgagcg aggggtggat      2460
     ccctccgacg cccgacgaag aggaaatgaa atgtgagttt gctttggtca tggtgaattt      2520
     catatccctg cagagattct cgaaatacaa tcgactgttg aggagcaccg catgggtgct      2580
     cagatttatt cgtcggtgcc gtggattgcg atacgatgga gaggatcacg gactgacgtc      2640
     gatggagtgc gctgaagctg agcgcgcact agtacggcaa tcgcagcgag aagcgtttgc      2700
     tgagaacgac caagggaagg ccgccaaggg cagccggttg catggactgt ccccatactt      2760
     cgacgaggac ggagtaatgc gagccagcgg aaggatcgac gacgcgacgt gtgtgccata      2820
     cagcgcacgt cgaccgatca tactgtgtca cgatgaggga ctggcggaga tgatcgtgca      2880
     gcatcaccac gagaggatgt gccatcaaaa cacggaggca accatcggag caatccggca      2940
     atccgcgagc agccctggcc atcaaggaat accactacgt ggacgactac gtcgacagtt      3000
     tcaccagtga agaagaagct atcgccgttt cgacacgggt tagagaaata cacgcagatg      3060
     caggatttga cttgtgtcga tttacttcca gttcggcaag tgtgttcaga gcgttgaacc      3120
     cacttgaatc catcgctagc gtcaaatgga ccgaagctga ggagaaggta ctaggaatgt      3180
     actggcagcc ggctacagac gacttcaagt tcggcatcaa atatcattga gtcccgagaa      3240
     tcgtgatgac aggggaacgc gtccctacca agagggagtt cctaagcctg gtcatgtcta      3300
     cgttcgaccc gattggattc ctgagctgct acatggtgac tgccaaattg ctaatgaggg      3360
     agatttggcg gaaaggagtc aactgggacg agccgctacc agctgatttg gccgcagcct      3420
     ttgaggattg gcggcaagga atgaggaaga tcgaagagtt ccgatgtccg cgctactact      3480
     tcggcggtgg acgcgtgcgg atgctacagc tgcacatctt tgtggactcc agtcagtcgg      3540
     cgttcgcagc agcggcttac gagaacggag acgagaacgg agacgtgcag gcgcatttca      3600
     taagctccaa gacgaaatgc gctccgatga ggactatgtc gatcccgcga ctggaacttc      3660
     aggcagcagt attgggcacg agactgatgg acaccgtcaa gcaagagcac ggtgtggcga      3720
     tcagcagctg cgtattatgg acggactcta agactgtgtt gcactggata agcagcaccc      3780
     accggagata caaacagttc gtcggtaatc gagtggcgga gatcttggaa tccacggagg      3840
     cgtcccagtg gagatggatt ccgtctggcg aaaacgtggc agacgacgcg acgaggccgc      3900
     gcaaggccgt ggacctgagc atcggttcga gatggctaag cggtccacca tttctacgag      3960
     gaccagagga gagctggcca agatcgagcg aggggtggat ccctccgacg cccgacgaag      4020
     aggaaatgaa atgtgagttt gctttggtca tggtgaattt catatccctg cagagattct      4080
     cgaaatacaa tcgactgttg aggagcaccg catgggtgct cagatttatt cgtcggtgcc      4140
     gtggattgcg atacgatgga gaggatcacg gactgacgtc gatggagtgc gctgaagctg      4200
     agcgcgcact agtacggcaa tcgcagcgag aagcgtttgc tgagaacgac caagggaagg      4260
     ccgccaaggg cagccggttg catggactgt ccccatactt cgacgaggac ggagtaatgc      4320
     gagccagcgg aaggatcgac gacgcgacgt gtgtgccata cagcgcacgt cgaccgatca      4380
     tactgtgtca cgatgaggga ctggcggaga tgatcgtgca gcatcaccac gagaggatgt      4440
     gccatcaaaa cacggaggca accatcggag cgatccggca gaagttctga attacgaact      4500
     tacggaggct gctacgaaac gtggtgagca aatgcaacgt ttgcaagctg cgaagggcac      4560
     gaccaactca gcccgagatg ggtcccctac cagaggaccg gctggaggcc aacggatggc      4620
     cctttaagtt cactggtctg gactattttg gaccgctact tgtgacggtt ggacgacgca      4680
     cggagaagag gtgggtggct ctgtttacgt gtctaaccac aagagctatc cacttggaga      4740
     tggctcacga tttgtccacc gattcctgta taatcgccat gaggaacttt atgtgccgac      4800
     gtggacccgt cgtcaggatt aggagcgata atgggaagaa cttcgttgga gccgaccgcg      4860
     aagccaggag gttcagcgaa gtgttcgagc ctgcacagat ccagggcgag ctgtcgtcca      4920
     aaggagttga atgggtcttc aattgcccgg cgaacccagc tgagggtggc gcctgggaaa      4980
     ggatggtgca gtgtgtgaag aaggtgctgg cgcacacaat gaaagaactt gcgcccaagg      5040
     agcacgtact ggagaacctg ctgattgagg cggagagcat agtgaactct cgtccgctca      5100
     ctcatctacc agtgacggtg gaccaggagg ctccactgac acccaacgat ttgctgaagg      5160
     gagcacccga tgttccagac cttcccaagg ttgacggaca ggaggttgtg cgatgcgcta      5220
     ccaggaagca gtggcgcata gcgaggatga tgcgggatcg tttctggaag agatgggtgc      5280
     atgagtacct gcctacactt gtgcgcaggg agagatggtg caagcacgtc gagccaattc      5340
     ggcgaggaga cctggtgttc atctgtgatc ctgccatacc acgaagggag tggaaacgag      5400
     gcgtcgtgga agaggtgttc accggaagag atggagtacc tcgtcgagcg gcagttcgga      5460
     ctaacgatcg agccaagact ataatgcgtc ccgcttcgaa gttagctgtc ctggatgtgg      5520
     tgaatgcggc tgcttcacgg gggtgggga                                        5549
//
ID   BEL-2_DAn-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   AAPP01018419;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DAn_;
KW   BEL-2_DAn-LTR; BEL-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018419; Positions    4634    4407.
XX
SQ   Sequence 228 BP; 78 A; 25 C; 55 G; 70 T; 0 other;
     tgtcgcggaa cggattagat tatcgatagt tagttaagtt taaattattt gccttagtat        60
     tttgtatcga tagctggtat tttaagttta ggttattttg gtcccactaa agaaaagtgt       120
     aaacagaggg aaacaatttg gcggaattag accgatttgc gccatcacga aagagggaag       180
     agaaactgcg gtaggttaag aataagtagt tgtaaaaata agtaatca                    228
//
ID   BEL-2_DAzt-I repbase;    DNA;    INV; 6602 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6602
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 768-768 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1355..6571
FT                 /product="BEL-2_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSESDRPTVERPTAERPTVPKTNTKLALCQQRFEKVS
FT                 ADIARVQTAFRSKQISSDKTELACRLELLEGYIDKAMNLQAELDILSPTNE
FT                 SRGPLEDLCVVTKALFMNAIKPRSDTQMQHDCSGNSRFDTHIHDCSLNSSQ
FT                 RSQLPKMRLPKFSGKHSEYKNFMCLFQSLIDDDASLTNVEKFNHLVSCLSD
FT                 EALGVVKPFQMTDCNYPKALASLKSVYDNKCLIFFDTVAQLFDLPTMTKPS
FT                 ASSLRSMIDTVSAIYSSLSSVGDDKDIANAMIIHMVMAKVDHVTKSRFEEQ
FT                 LDYDKLPSWEDCAKQLNRRYQYLAAEESTRDKSRVRNEVRKPQRKSSFACA
FT                 SAGQRSSTACTYCRSADHNLYSCPSFSAISVMQRFEYAKTQKLCLNCLTTG
FT                 HTVSSCKAAKCRVCAKPHHSLLHRYTASGQGEAASLQASTSEAYVGHVLNA
FT                 DQVVLATAIVSIKDRFGQLHPARALLDSGSQINLMSESLAQRLRLKREPTS
FT                 LAIAMVGGATTDSKTKVCASIHSRLNSHTFSAECWVLKSISTSQPGQSLST
FT                 SSWKIPKNIQLADPEFHKPAKVDVLLGAEVFYGLLCVGQIKLHSELPIMQK
FT                 TLLGWIVAGKCTGQAPRQQCNESSVAQVYSCSLDSLVNRFWELDQCPIESK
FT                 AVRQTAEQQACELYFAKTVQRLSSGRFQVKLPFKTDPKVLGLSFQTAERRF
FT                 LQLERKLSKDDTLKSMYHDFMKEYLDLGHMSILKSAPLEQHYYIPHQCVLR
FT                 PESTSTKLRVVFDASSKTSTAVSLNETLMVGPTIQRELYSTLVNFRLNKYA
FT                 VTADISKMYRQINVSEEDRDFQLVLWRENPSQNIQAYRLNTVTYGTASAPF
FT                 LAVRCLFELADSFAQSHPIGAEVIRNCFYVDDMLAGADSLKELDTICSQVR
FT                 DILKSGGFPLAKWASNCPTQCGKNEEINIKVDEQSSVKTLGMRWAPQDDVF
FT                 KYHLDVDSFASLKPTKRNILSIASRLFDPLGLLCPIVTKAKMLLQDLWRLK
FT                 VDWDETIPMSLHTEWNKFTNTLRDLHKISIPRYVCLTLYQGVQIHGFADAS
FT                 SHAYGCCIYVRTCNDEDVRVSLLTAKSRVAPLSVKTIPRLELCAALLLAKL
FT                 WQQVSTTMTKFTIESVNFWSDSQVTLYWLERDSGTLGTFVANRVAECQELS
FT                 AGVVWRHVPTDANPADLVSRGTDVDDIVSSLWFNGPSFLMAEKDRWPQLHQ
FT                 FEIASEVKTSEDKKSAVVCALGVGDAESNCIVQLINRQSRFSKLVRIMAYV
FT                 LRFCFRQLRGDSHLVSATERNIAFLKLIAVVQSTTYSTEYRLLEKSAALAP
FT                 MLQSLNPFVHEFDENGIKFKLIRVGGRLLHGPIAYDAKFPLLLPKGSELVS
FT                 LLVRHLHLMHYHAGAKVLVGLLRQQVWVINARSVCTAHIRRCVHCFHYKPK
FT                 LLGQIMGNLPADRLREGRPFRVAGVDFCGPFYVSYRIRGRPPVKMYVAVFV
FT                 CFASKAVHLELVSDLSTDAFLNVFKRFVGRRGLPEKMVSDNATNFVGASNV
FT                 LRELQAAVLRSREELQEYAAERGVNWCFIPPRAPHFGGLWEAAVKAAKHRL
FT                 VRGAGDANLTPDELSTHLVEVEALLNSRPLVADTSDPNDGEAITPGHLLIG
FT                 QPLLGLPQGSTPEEPNNKPAHGYLKRWQQLLGLKLRFWRKWSRDYLLSLQQ
FT                 RAQWSKGEANLAEGAVVLVHDDNTPPQRWITGRVTRVMTGEDGKVRVAEIR
FT                 TPAGVIRRPIRKLAPLPTC"
XX
SQ   Sequence 6602 BP; 1711 A; 1513 C; 1649 G; 1729 T; 0 other;
     ttggcgcccg agcagggaca tcggttttgt ttttttttgt tttcgtgctg aatttagttc        60
     tttcgctcag tggtggctta gggctcgcgt gtgaaaaagc gccaagttga accgtgccac       120
     agacgtgccc ttttggaccc tcgccatttt ggacgctgcc gtagttgaag ccacggacgt       180
     gaccctttgg accctcgcca ttttggacgc tgccgtattg gaagtgctga tggacgtcaa       240
     aacaggacga ttactttcta tagattcgct agaaagtttg caggtattct gtgccaaaaa       300
     ttgagtctca ccggttgttt tacgttgtgt cgcgatatat agttcgtttg tccgaccaga       360
     acgatcaact gcagtgatat acatatgtgc gtgtgtatgt gctaacagtc aaacacagag       420
     aacacagctc aatttctggc accttccttt tatttatacc ttatttggcc aaattaatgt       480
     gcattaagtg aaagtgtcgc aagtatacgt gtgtacaaac atatgtacat aagttcgaat       540
     tcgtcgaaca tacataccta cgccatatat acgtatgctc atgctgacca ccacttaatg       600
     tgcataaaca aagcggcaac acatatgtac atatttacct aaaaatttta tataactaca       660
     tatatccaaa tataatatat atacagtata aacggtggtc tacctagtgt atttaataac       720
     attggtcgtg tgtttgtgca atcgcaaagc gtcgcagtgt catttcggtt gttcgttttg       780
     atttaaccgc tacgtacaat acaatataca tatgtacata cacacctaca gacatctgct       840
     tgcaattgca catacacgca acgcttggta aaggttcttg ggcaccagca gcagctgatt       900
     tttcgtgcgt tcgttaacct tgctcgctct ttgcttgcat cagttatata ttagtttgtg       960
     tgtgggagcg ctcgcgccaa atttaccgct tgttctcttc tcccccgttt tgacatacca      1020
     tacaggtcag cttggttcga gcgcctgtat tactttcgtc ttgtgcgtgc gctcgcgcca      1080
     aattctctca cttactcttt gatcccccgc actttgcatt ctacccctgt tgcccacaaa      1140
     gtggcagcag cgagcatcgg gcttgcttac tttcggtcgc ttggaccgct ttcgtttgtt      1200
     tgttcacata ttgcgccagg gcgtttgtgt gtttgggtaa gcaagcttgg tgtttttttg      1260
     gtacagagct gcagtgcgtg tgcgagggta gattgaagag tttggcgaac tttgggtacg      1320
     atattgaagg tagttccttt ttcgcatttc aactatgtct gagtccgata gaccaactgt      1380
     ggaacggcca acagctgaac ggccaacagt gcctaaaaca aataccaagt tggcattgtg      1440
     tcaacaaagg tttgaaaagg tcagtgctga tattgcacgc gtgcaaacag cctttagatc      1500
     gaagcaaatt tcatcggaca aaaccgaatt agcttgtcgc ctagaacttt tagagggtta      1560
     tatcgataag gctatgaacc tgcaggcaga gttggacatt ttgagtccaa ccaatgaaag      1620
     tagagggccg ttggaggatc tgtgtgtcgt cactaaagca ttgtttatga atgcaattaa      1680
     gccaagatcc gacacacaga tgcagcatga ctgctcaggg aattcacggt tcgacacaca      1740
     catacatgac tgctcactga attcgagcca gcgatcgcag ctgccgaaaa tgcgtttgcc      1800
     gaagtttagt ggcaaacatt cggagtacaa aaatttcatg tgcctgttcc aaagccttat      1860
     tgacgacgat gcttctttga caaacgtaga aaagtttaac catctcgtat cgtgtttgtc      1920
     agatgaagca ttgggtgtag tgaaaccttt tcagatgaca gactgcaatt accctaaggc      1980
     ccttgccagt ctgaagtcag tctacgacaa taaatgtcta atattcttcg atactgttgc      2040
     tcagttattc gatttgccaa ccatgaccaa gccatctgca tcgagtttaa gatcgatgat      2100
     agacacggtg tctgcgatat attcatcgct gtcgtctgta ggtgacgaca aagatattgc      2160
     gaacgcaatg atcattcaca tggttatggc aaaggtcgac catgtgacca aatcccgttt      2220
     tgaggagcag cttgactatg ataagctgcc ttcttgggaa gactgtgcca aacagctgaa      2280
     tagaaggtac cagtacctgg cagcagaaga gtcaactcgt gacaagtcaa gggtgcgtaa      2340
     cgaggtgcgg aagcctcaac ggaaatcgtc ctttgcgtgt gctagtgccg gtcaaaggtc      2400
     gtcgactgca tgtacctatt gcaggtctgc agaccacaat ttatattctt gtccgtcgtt      2460
     tagtgccatt tccgtcatgc aacgttttga gtatgctaaa actcaaaaac tgtgcctcaa      2520
     ttgcttgacc acgggacata cagtgtcgag ttgcaaggca gcgaagtgta gggtgtgcgc      2580
     aaagcctcac cattcgctcc ttcatcggta cactgcatca gggcaaggtg aagcagcgtc      2640
     acttcaagcc tcaacgtcgg aggcatacgt aggtcacgtg ctcaatgcgg atcaagtcgt      2700
     tctggctacc gcgatcgtaa gcatcaaaga cagattcgga cagttgcatc cagcaagagc      2760
     tttgctcgat agtggctctc aaataaattt gatgtctgag agcctagcac agaggcttcg      2820
     gcttaaacgt gagccaactt cccttgctat cgcaatggtg ggtggtgcaa ccaccgatag      2880
     taaaactaag gtttgtgcat cgatacattc tcgtttgaat tcccacacgt tttccgctga      2940
     gtgttgggta ctaaagtcga tttccacatc tcagcccggg caatcacttt ccacatcgag      3000
     ctggaaaatc ccaaaaaaca ttcaattggc agatcccgaa ttccataagc cggctaaggt      3060
     ggatgttctc ttgggagctg aagtgtttta tgggctattg tgcgttgggc aaattaagtt      3120
     acattccgag ttgcccatta tgcaaaaaac attgctcggt tggattgttg caggcaaatg      3180
     tactggacag gcgcctcggc aacagtgtaa tgagagttcg gtagctcaag tgtatagttg      3240
     ttctctcgac tcattagtaa accgtttttg ggaattggat caatgtccaa ttgagtcgaa      3300
     ggctgtccgc caaacggctg aacaacaggc ctgtgagttg tacttcgcaa aaacggtaca      3360
     acgattgtct tccggtcgct ttcaagtcaa acttcccttc aagaccgacc ctaaagttct      3420
     tggcctgtcc tttcaaactg cggaaaggcg ttttttgcaa cttgagcgca aactgtcaaa      3480
     ggatgacact ctcaaaagta tgtaccatga cttcatgaaa gaatacttgg atttgggaca      3540
     tatgtccatt ctgaagtctg ctcctctaga acagcattac tatattcctc accaatgcgt      3600
     tctcagacct gaaagtacct caaccaaact tcgcgtggtg ttcgacgctt ccagcaaaac      3660
     atcaacagca gtatcgctga acgaaacact tatggtgggg ccaactattc agagggagtt      3720
     gtattcaaca ttggtcaact ttcggttgaa caaatatgcc gtaactgccg atatttcgaa      3780
     aatgtacagg cagataaatg tttctgagga agatagagac ttccagcttg tcttgtggag      3840
     agaaaaccct tcacaaaaca tccaggcata caggttgaat actgttacat acggtacagc      3900
     gtcagcaccc tttttggctg tacgttgctt attcgaattg gcagatagtt tcgcacaatc      3960
     acatcccatt ggcgcggaag tgattcgcaa ttgtttttat gtcgacgata tgctggcagg      4020
     tgcagacagt ttaaaagaac tggacaccat ttgcagccag gttcgggata ttttgaagtc      4080
     aggaggattt ccgttggcca agtgggcttc caattgcccg actcaatgtg gaaaaaatga      4140
     ggaaatcaac attaaggttg atgagcaaag ctcagtcaaa acgcttggaa tgcgctgggc      4200
     acctcaagat gatgtgttta aataccatct ggacgtggac agttttgcct ccctgaaacc      4260
     cacaaaacgc aatatattgt cgatagcctc tcgtttgttt gaccctcttg gattgttgtg      4320
     tccaattgtc actaaggcaa aaatgctgtt gcaggactta tggaggctaa aggtagactg      4380
     ggatgagacg attcctatga gtctacacac tgagtggaat aagttcacca ataccttgcg      4440
     ggatttgcac aaaatttcaa tccctcgtta cgtatgtttg acgctgtacc aaggggttca      4500
     aattcacggc tttgctgacg catccagtca cgcctacggt tgctgcatat acgtgcgaac      4560
     atgcaacgac gaagacgttc gcgtatcatt gctcacggca aagtcgaggg tagctccgct      4620
     gagcgtaaag acaatacccc ggttagagct ttgtgctgca ctattgctgg ccaaactctg      4680
     gcaacaagtg tcgaccacaa tgaccaaatt cacgatagaa agcgtaaatt tctggtcaga      4740
     ttcgcaggtc acgctatatt ggttggagcg tgattcgggt acgttgggta cattcgtcgc      4800
     gaatcgagta gcagaatgtc aagaactgtc agctggagtc gtatggcgtc acgttccaac      4860
     ggatgctaat ccagcagact tggtttcaag gggaacagat gttgacgaca ttgtgagctc      4920
     cttgtggttc aatgggccaa gctttttaat ggcagaaaaa gatcgatggc ctcaacttca      4980
     tcagttcgag atagcgtcag aagtgaaaac ttctgaagat aagaaaagtg cagtggtatg      5040
     tgcgcttggg gtaggtgatg ctgaatcgaa ttgcattgta caattaatca accggcaatc      5100
     gaggttttct aagttggtcc gtataatggc ctacgtgctt cgattctgtt tcaggcagct      5160
     tagaggtgat tcgcatcttg tatctgcgac agaaagaaac attgcgtttt taaagctgat      5220
     cgcagtcgta caaagcacaa catatagcac ggagtataga ttattggaaa aatcggcagc      5280
     actagctccg atgctgcaat cgttaaatcc attcgtccac gagtttgatg aaaatggcat      5340
     caaatttaag ttaattcgag taggagggcg cttgctacac ggccctatcg catacgacgc      5400
     caagttccct ctgttgctac caaagggatc tgaattggtc agccttttgg tcaggcattt      5460
     gcaccttatg cactaccatg ctggtgcaaa ggttcttgtg ggattgctga ggcagcaagt      5520
     ttgggtgatc aatgcccgaa gcgtgtgtac agcgcatatt agaagatgcg tacactgctt      5580
     tcactacaag ccaaagttgt tgggacaaat aatgggaaat ttgccagctg accgccttcg      5640
     tgagggtcgg ccgttcagag tagctggcgt agatttttgt gggccgttct acgtaagcta      5700
     tagaatcaga ggtagaccac ccgttaagat gtacgttgcc gtttttgttt gtttcgcctc      5760
     aaaagcagtc catctagaac ttgtctcaga cctttcaact gacgcctttc taaatgtctt      5820
     caaaaggttc gttgggagac ggggacttcc ggagaagatg gtcagcgaca acgcgaccaa      5880
     cttcgtggga gcgagcaacg tcctgaggga gctccaagcg gcagttctca ggagcaggga      5940
     ggaactgcag gagtacgcag cggagagagg ggtgaactgg tgcttcatcc ctccgagagc      6000
     accgcacttc ggcgggctgt gggaagccgc agtgaaggca gccaagcaca ggctggtgcg      6060
     aggggcaggc gacgccaacc tcacgccgga cgagttgagc acgcacctgg tcgaggtcga      6120
     agcgttgctc aactccaggc ccctcgtggc ggacaccagc gacccgaacg acggggaggc      6180
     catcacgcct gggcacctgc tcatcggcca accgctgctg ggcctgccgc aaggatccac      6240
     gcccgaagag cccaacaaca agcccgcaca cggatatttg aagcggtggc agcagttgtt      6300
     ggggctcaaa ctgcgctttt ggcgcaagtg gtcgcgggac tacctgctca gcctgcagca      6360
     gcgagcccag tggagcaagg gcgaggccaa tctggccgaa ggagccgtcg tgctggtgca      6420
     cgacgacaac accccccctc aacgatggat aacagggcgc gtgacgcgcg taatgactgg      6480
     agaggacggc aaggtgcggg tggccgaaat aagaacgcca gccggcgtga ttagacggcc      6540
     catccgcaaa ctggcaccac tgccaacgtg ctgaagaccg gagctcttca gcggggccgg      6600
     aa                                                                     6602
//
ID   BEL-2_DAzt-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-281
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 748-748 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 281 BP; 82 A; 62 C; 72 G; 65 T; 0 other;
     tgttggagca gagagcagaa gagaagagag ccaaaaagcc tctccagctt cgggcgacct        60
     gcaaagccga ccttcgcgat cgccgacggc gaattgggtt gcgggcggcc gacgctggtc       120
     gatgggaaga gtggagtggg atcggacttc acttgtcgaa gtacgcccaa agccactgca       180
     ttcgtttgtc agcaaataaa accatttaaa tagaacaaaa accgcgtctc attcaattca       240
     ttttagtttg tttgcaaatc taaaaaatat tagatttttc a                           281
//
ID   BEL-2_DBi-I repbase;    DNA;    INV; 5416 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DBi_;
KW   BEL-2_DBi-LTR; BEL-2_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5416
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 813-813 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4469-5047] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..1285
FT                 /product="BEL-2_DBi-I_2p"
FT                 /translation="MEQLKSLVKSRARLKANITRVLAWAEQTESATHTEIV
FT                 TRMELLNEVWKEFNQFSDCISLHEGVEGYVDPEIDNAVYETKYLRANAILK
FT                 ERSNDLQPGTSQGSGNGSNGLHSNNDAILNLLQQNQQLFERLAVSQTTPNT
FT                 PDHVGGDVTSPNSNSVLTANSTLSELPKIQIKRFSGNYTEWPSFQDIYEST
FT                 IHNKQHLSNTQKFHHLKTLLVDEAANLVRHLAITDTAYNTAWERLKERYNR
FT                 PRHIVNSFLEQFMSLPTTTKIDATVLRKVSDGANEIVRGLDAVNQTGRDCW
FT                 IIYLALEKLDADTRRRWIERSMESDSPTLEEFFKFLDSRCEELELSKRELA
FT                 TGSKTTTHPEKQKGSHNRWLRLKAVAAPNVVLQNTLCMDVSCFWICLGCRD
FT                 DHL"
FT   CDS           3773..5416
FT                 /product="BEL-2_DBi-I_3p"
FT                 /translation="MATGQGAVHGKVERLTIWLISFRQRIQGEVKTNCLAT
FT                 MADATQAHPLDELIARVSSWLKLVHIVAYVKRFIQRTRNPSCNKASTALTF
FT                 DEVKAARIICIKHAQRCFQQDYQLLLAKKPLKNRSQLVKLAPMIDENDLLR
FT                 VGGRLQQSQLTREAKHPVLLPKTHRISKLILEHEHRVNLHPGVSSLFVIVR
FT                 QKFWIIGARNLIRKITHDCLSCFRQRYHTSQQQMADLPSIRVTQALPFVNT
FT                 GCDYAGPILLKDAKVRKPRISKGYICVFVCMVTSAVHLELATDLTTETFLA
FT                 ALRRFISLRGKCSKIYSDNGTNFIGAKRSLDEMQELLSSQEHQDIVTSTLA
FT                 DDGIQWVLIPPRAPHWGGKWESAVRCVKLHLRRITGNSTLTFEQMRTLLAQ
FT                 ISAVINSRPLCYAPDTETNYLSPAHFLIGRPFTTVPDPDLSHIPVGRLGYW
FT                 QSIQAMLQGFWKKWHQEYLTTLQQRPKWTASTPNLSIDDVVLVKESNTPPA
FT                 SWHIARVMETYPGKDNLVRAVKLKTPTGEMTRPITKVAVLPNSETVFQGGP
FT                 G"
FT   CDS           2376..3920
FT                 /product="BEL-2_DBi-I_4p"
FT                 /translation="MREYINLGHMREVPPEDIAAGNQFFLPHHPVLGRKLR
FT                 VVFDGSFRDANGKALNDTLFTGPSIQRDLFAVCLRFRMYKYAFSADIVKMF
FT                 RQIWVNERHRNYQKIVWREDPSDPIKHFQLCTVTYGTSCAPFLAVRVLEQL
FT                 AVDHRDEYPIASKILLEDFYVDDVLTGSNSEDELLRNRNELIQLMSCANLE
FT                 LGKWVSNSPFIHTDDTDAQLSPVKVLGLYWHPGKDILTYNVGLAANPDCTK
FT                 RQVLSDVSRIFDPLGLLAPVVIQFKIIFQKLWLLNLDWDDPLPTKLADIWL
FT                 KWRKDLHTLQKFELQRFVANDADNIELHGFSDASTKAYAAVVYSRVTNDDG
FT                 SISVSLVAAKTRVAPLKQQSLPRLELCAALLLSQLIRSISSGLRHKNITVF
FT                 AWSDSSIVLSWLSYAPAQLKTFVGNRTSEILDTIPRKSWRHVDSKTNPADC
FT                 ASRGLMAADLIDFQLWWNGPLWLRDKEQYMVKLNDSRFGLSLSDNAFKEKS
FT                 RPTVWLQWLMQLRLIPSMS"
XX
SQ   Sequence 5416 BP; 1553 A; 1362 C; 1230 G; 1269 T; 2 other;
     aaatcktata tatttctaac catattgctg gtccatcgtt ccggattctt ggacagtttt        60
     tgaagtgctt tgattctcag ggtaattgtt tgctatggaa caattaaaat cattagtgaa       120
     aagccgtgcc agactcaagg ccaatatcac acgtgtcttg gcatgggctg aacaaacgga       180
     aagtgcaaca cacacagaga tcgtcacacg tatggagctt ctaaacgagg tttggaagga       240
     gtttaaccag ttcagcgatt gcatttctct tcacgaggga gtggagggtt atgtagatcc       300
     ggagattgac aacgcggtct acgagacaaa atacctaagg gcgaacgcta tactcaagga       360
     acgaagcaat gatctacaac cggggacatc tcaaggcagt gggaatggca gcaatgggct       420
     tcattcaaac aatgacgcaa tcctgaactt gctgcagcaa aaccaacaac tatttgagcg       480
     acttgcagta agtcagacca caccgaacac gcctgatcat gttggtggtg acgtcacatc       540
     gccgaattct aactcggtac tcacggcgaa ttcaactctg agcgaattgc cgaaaattca       600
     aatcaagcgg ttctctggaa actacacaga gtggccttcc tttcaagaca tatatgaaag       660
     cacaattcat aacaaacagc atttgtccaa cacccagaag ttccatcact tgaaaacact       720
     tctcgttgat gaggctgcca acttagtgcg acacttggcc atcactgaca cggcgtacaa       780
     tactgcatgg gaacgtctta aggaaaggta caatcgtcct cggcacattg taaactcatt       840
     tttggagcag tttatgagcc tgccaacaac tacaaagatc gatgcaacag tcctacggaa       900
     ggtctcagac ggagcaaacg aaattgttcg tggkttggat gcagtcaatc aaacgggacg       960
     cgactgttgg atcatctacc tagccctaga gaaactcgac gctgacacac ggcgcaggtg      1020
     gattgagcgt agcatggagt cagattcacc caccctggag gagttcttca aatttctgga      1080
     ttctcgctgc gaagaactgg agctgagcaa gagggagctt gcgactggaa gcaagacaac      1140
     aacacatcct gaaaagcaaa aagggtcaca caatcgatgg ttgcggttga aagcagtggc      1200
     tgcaccaaat gtagttctac agaacacact ctgtatggat gtcagctgtt tctggatatg      1260
     tctggggtgc agagacgatc atttgtgaag gagaaatcac tgtgctacaa ttgcttgcga      1320
     cctggtcatg gggtcaacag gtgcaagtca acattcaaat gcaggcaatg caaaggtaat      1380
     catcatactc ttcttcatct ccaaccaaat ccacaggcta ttgggaatct tgcccaaata      1440
     gcagagcagg acgagcagaa cataagcgcg tctaacagca acacagcgac actcagtcat      1500
     cttgcccaag gagaggacac acaaaaggtt gtatgtgcgc aaggcactgc aaaatcaaca      1560
     catttaactg aattaaaacg gagcatatta ccaactgcaa tggtttatgt caaaaacgca      1620
     aaaggtgacc tcgtaacatg ccgtcttcta ttggacacag gatcggagct gtcttacgta      1680
     tccgagcgtt gcatccaagc tctcggactg acacgatcgg catcacgcat cttggttacg      1740
     ggaatctctt ccgtaaaagc agacacaaca aggggatgca ccacgctgca tatcaagtct      1800
     tgcatatccg atgatcgttt ggttgtctat gctcacgtgc taggcagaat cacctcttct      1860
     ctggaacggc aaaacatcga cgcatcaaca ctcgaggtgt ttaaggatct gcagttggcg      1920
     gatacacaat tcaacacaaa cacaccagtt gatatactat tgggaagcga gcacgtatgg      1980
     tcagtgttca caggacgaaa gatgtacgac aacaagggta atcttatcgc catttcttcg      2040
     gtattcggat gggttatcac ctcactcatc acatcgaacg caagcaacgc tgttgcacta      2100
     actacaacaa tggagattga ccgcactctt caaaagtttt gggaactgga gaatgttcaa      2160
     acagcacaaa agcagaaccg gaagatgaaa aggtcgagaa acactttctc gccacccaca      2220
     gtcgcgatga aaatgggaag tatgtcgtgg aacttccatt caacgcggaa aatcctgaat      2280
     tcggagacac tctgcatgga gctcttaagc gcttcaaatc ggtagagcga cgtctacaac      2340
     aaaacgagca gctgcggaca cagtacgtat acttcatgcg ggagtatatc aacctggggc      2400
     acatgcgtga ggtgccgcca gaggacattg ctgctggaaa tcaattcttt cttccccacc      2460
     acccggtgct cggccgaaag ctgcgagtgg tttttgatgg atcctttcgc gacgctaacg      2520
     gtaaggcgtt aaatgacact cttttcacag ggcccagtat ccagcgtgat ctctttgctg      2580
     tgtgcctacg ctttcgtatg tacaagtacg cattctcagc ggacatcgtt aaaatgttcc      2640
     gccaaatatg ggtcaacgaa aggcacagaa attaccagaa aatcgtttgg agagaagatc      2700
     catccgatcc gatcaagcat ttccaactgt gcactgtaac ttacggaaca tcatgtgcac      2760
     cattcctggc ggtacgagtt ctggaacaac tcgctgtgga tcatcgggat gaatacccta      2820
     tcgcttcaaa aatcctactg gaggattttt atgtcgatga cgttcttact gggtcaaaca      2880
     gtgaggatga gctacttcga aaccgaaacg aattgattca gctgatgtcg tgcgcaaatc      2940
     ttgaactcgg gaaatgggta tccaatagcc ctttcataca cacggatgat accgacgcac      3000
     aattgtcgcc agttaaggtt cttggactat actggcatcc tggcaaagac attctaactt      3060
     acaacgtagg cctagcggca aatcctgatt gcaccaagag gcaagtcttg tccgacgtct      3120
     cgaggatatt tgatcctctc ggactcttag cacccgttgt catccagttc aagattattt      3180
     tccaaaaact ttggctcttg aacttggatt gggatgaccc actcccaact aaactagcgg      3240
     acatctggct gaagtggagg aaagatctac acactctaca aaagttcgaa ctacaacgct      3300
     tcgttgctaa cgacgcagac aacatcgagc tccacggatt ttcggatgct tcaaccaagg      3360
     cgtatgctgc tgtggtctac agcagagtaa ctaacgacga tggctccatc tcggtgtccc      3420
     tggtggctgc gaaaacaagg gtggctccac tgaaacagca atcattgcca cgcctcgaac      3480
     tttgcgcagc acttcttctc agccagctta ttcgttcgat ttcgtctgga ctacgccaca      3540
     agaacataac agtttttgcc tggtcagact catcaatcgt gctatcctgg ttatcgtacg      3600
     caccagccca actaaaaaca tttgttggaa acagaacctc ggaaatcctt gacactattc      3660
     ccagaaagtc ctggcgtcac gtagactcca aaacaaaccc agctgactgc gcttccaggg      3720
     gtctgatggc tgcagacttg atcgacttcc aactgtggtg gaatggacct ttatggctac      3780
     gggacaagga gcagtacatg gtaaagttga acgactcacg atttggctta tctctttcag      3840
     acaacgcatt caaggagaag tcaagaccaa ctgtttggct acaatggctg atgcaactca      3900
     ggctcatccc ctcgatgagc tgatcgcacg agtttcctca tggctcaagc tcgttcacat      3960
     tgtcgcatat gtgaagcgct tcattcaacg gacacgaaat ccatcttgca acaaggcctc      4020
     aacagctctt acattcgacg aggttaaggc agcaagaatt atttgtataa aacacgcgca      4080
     acgctgtttt caacaggact atcagctcct ccttgccaag aaacctctca agaaccgatc      4140
     gcagctggta aagctagcgc caatgatcga cgaaaacgat ttgctgaggg taggcggacg      4200
     actgcaacag tcgcaactga cacgagaggc aaaacaccca gttttgctac caaaaacgca      4260
     tcgaatctcg aagctgatcc tggaacacga gcaccgagta aaccttcacc ctggcgtttc      4320
     ctccctgttt gtaatcgttc ggcaaaaatt ctggataatt ggagcacgta atctcattcg      4380
     caaaataaca cacgactgtt tgtcctgctt tcgtcaacgc taccacacat cccaacagca      4440
     gatggctgat ttacccagca ttcgtgtcac tcaagcgctt ccattcgtaa acactggttg      4500
     cgattatgca ggcccaattc ttctaaagga tgccaaagtt cggaagccac gtataagcaa      4560
     gggctacatt tgcgtgtttg tttgtatggt cacctccgcc gtacacctgg aacttgccac      4620
     agacctgaca accgaaacct tcttggctgc cttgcgtcgc ttcatatctc tgcgtggcaa      4680
     atgtagtaaa atatacagcg acaacggaac caacttcatt ggagccaaac gatctctcga      4740
     cgaaatgcaa gaattgcttt catcacaaga acaccaggac atcgtaacat ccaccctggc      4800
     agatgatgga attcaatggg tactcatacc tccacgagct cctcattggg gagggaaatg      4860
     ggagtcggca gttcgttgtg taaaactgca tctccgcagg atcaccggca attcaacgct      4920
     caccttcgaa cagatgcgca ccctgcttgc tcaaatcagc gctgtgataa attcacgccc      4980
     cttatgctat gcaccggata ccgaaaccaa ctacttgtca cccgcccact tcttaattgg      5040
     gcgaccgttt accaccgttc cagatcccga cttaagccac atccccgtgg gccgattagg      5100
     ttattggcag agcatccagg ctatgctcca aggattctgg aagaaatggc atcaggagta      5160
     tctgactact ctgcaacaac gtccgaaatg gaccgcttct acacccaacc tctcgatcga      5220
     tgatgtagtt ctcgttaagg agtccaatac gccaccagca tcttggcaca tcgcacgggt      5280
     tatggaaacc tatccaggaa aggacaacct cgttcgagca gtcaaattga agacaccaac      5340
     aggagagatg accagaccca tcacgaaggt tgcagttttg cccaattcag aaactgtgtt      5400
     tcagggcggg ccggga                                                      5416
//
ID   BEL-2_DBi-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DBi_;
KW   BEL-2_DBi-I; BEL-2_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-227
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 814-814 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 227 BP; 73 A; 50 C; 34 G; 70 T; 0 other;
     tgttcgtgaa cggttgcagt ctctaataac ttatcatctt taggcgcata atgccatcac        60
     tatcctatat attcaatcta tgtaaaagaa aaccgccata tatctgtata catatatctt       120
     ttttcgcctc tggcaatgct gctacggcgt cccttggtga aattcaactt agtatcaaat       180
     aggcttcgaa actggcaaga ataaaaatta atacagtcca cacaaca                     227
//
ID   BEL-2_DBp-I repbase;    DNA;    INV; 5376 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DBp_;
KW   BEL-2_DBp-LTR; BEL-2_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5376
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 626-626 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4453-5007] - Integrase core
CC   'CTATC' target site duplication
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..2995
FT                 /product="BEL-2_DBp-I_2p"
FT                 /translation="MEQLKALVKGRARLKANITRSLAWAEDAHQSDATPAE
FT                 VSSRLEHLNTTWKEFIRFGDEIAVLDEVDGYVDPEPDNAFYEGKYLRAHSL
FT                 LSAMAGTRPSPSTVSSENGSNGLQINNDAIISLLQQQQQLFEQLAADRATA
FT                 QLPRPTRGDVSAANSGTAQIVEASAQSELPKIQIKRFAGNYSEWPAFKDIY
FT                 ESTIHNKANLTNTHKFHHLKSLLIDEAANLVRHLTITDAAYNTAWERLNER
FT                 YNRPRHIVNSFMEQFMKLPTTTRSDAATLRKVSDGANEIVRGLDAIEETGR
FT                 DCWIIYLALEKLDADTRRRWIERSVESDSPTLEEFFKFLDARCEELELSKR
FT                 ETTGGKTTASIGDKTKKVTHSLVALDGNKCSKCYSTEHRLYGCPQFLGMSA
FT                 GQRISFAKEKSLCYNCLKPGHGVRRCKSTFNCRQCKAQHHTLLHLQGTQHA
FT                 IGTIAQTGEDQDDPNAHISPVTISHIAQTEGSAAIVCAQGTASSTQSNGWN
FT                 RSTLPTAMVNVQNANGDLVACRLLLDTGSELSYVSERCIHALGLARTPSRI
FT                 LVTGISSIKADTTRGCSTLRIQSRISEDQLVVQAHVLGKITSSLERQSIDA
FT                 SALQVFNDLQLADSQFSTSGPVDILLGSEHVWSAITGRKIFDNKGKLIAIS
FT                 SIFGWVITSLFAPRASNTMALTTTVDIDATLRRFWELESIHRKAEVQPEDK
FT                 EVEEHFLNTHTRDDNGKYIVELPFTSSDPEFADTLQGALQRFKSVERRLAQ
FT                 NHQLRKDYVNFMREYQSLGHMREISPSEIPNERSFYLPHHPVLGRKLRVVF
FT                 DGSYRDAKGKALNDTLSIGPSIQRDLFAVCLRFRMHKYVFSADIVKMFRQI
FT                 WVSEKHRNFQRIVWREDPSDPIKHFQLCTVTYGTSCAPFLAVRVLEQLAAD
FT                 HQKEFPTAAKILMEDFYVDDVLTGSNSEDELRRNRDELVQLMSCAKLELGK
FT                 WVSNTKYIDRRITRIPHTHR"
FT   CDS           3370..5376
FT                 /product="BEL-2_DBp-I_1p"
FT                 /translation="MVKDDGTISVAILAAKTRVAPLKQQSLPRLELCGALL
FT                 LSQLLQSIKAGLKHKDLTIYAWSDSTIVLSWLAYSPAQLKTFVGNRTAEIL
FT                 ETIPKHAWRHVDSKSNPADCASRGLGVSELIDFQLWWKGPSWLRDKDQFLV
FT                 KLNNSHNCSSLSDKRIQSEIKANCLAAQVIVTTDNPLDKLLNRNSSWLKLI
FT                 HTLGYVLRFIHRMKHPSSKRTSTSLTFDEIKSARIRWLQHAQAGFQQDFQL
FT                 LLANKPLGNQSKLVNLSPFIDKDNLLRVGGRIQHSQLSAEAKHPILLPKAH
FT                 RITFLIIEHEHRVNLHPGVSSLFVIVRQRYWIFGARNLIRKITHNCLACFR
FT                 QRQHTMHQRMADLPSVRITQALPFVNTGCDYAGPILLKDAKVRKPRISKGY
FT                 ICLFVCMVTSAIHLELATDLSTETFLAALRRFFSIRGKCTRMYSDNGTNFG
FT                 ARDPRSSTQRKDHVANSLADEGIQWTFIPPRAPHWGGKWESAVRCVKLHLR
FT                 RVIGSSTLTHEQMRTLLAQISAVVNSRPLCYTSDTDSNYLSPAHFLIGRPF
FT                 TTIPEADLGHIPVGRLGYWQSIQSMYQGFWKQWHQEYLTSLQQRPKWTKET
FT                 PNIKIGSVVLVKESNTPPASWHLARVIETYPGKDNVVRAVRLKMASGELTR
FT                 PITKIAELPHSETVFQGGPG"
XX
SQ   Sequence 5376 BP; 1576 A; 1326 C; 1269 G; 1205 T; 0 other;
     ttgtttggtc cttcgagccg gatgtttttg ttgttttctg tgcattggtt ctcacggtaa        60
     ttgttcttca atggagcaat taaaagcatt ggtgaaggga cgcgccagac tcaaggccaa       120
     tatcacacgg agcttggctt gggctgagga cgcgcaccaa tcagacgcca caccggcgga       180
     ggtgtcttcg cggctggagc atctcaacac aacatggaag gaattcattc gatttggtga       240
     cgaaatagct gttctagacg aagtagatgg ctatgtggat ccggagcctg acaacgcttt       300
     ctacgaggga aagtatctac gggcgcattc attactttcg gcgatggcag gtacaagacc       360
     tagcccatcc actgtgagta gcgagaacgg cagcaacggg ctgcaaatca acaacgacgc       420
     aataatcagt ttgctacaac aacaacaaca attgttcgag cagttggcgg cagatcgagc       480
     cactgcgcaa ttgccaagac ctacaagagg tgacgtcagt gcggcgaatt caggtaccgc       540
     acaaatcgta gaggcatcag ctcaaagcga attgcctaaa attcaaataa aacggtttgc       600
     tggcaactat tcggagtggc cagctttcaa agacatttac gagagcacaa ttcacaacaa       660
     ggcgaatttg acaaatacgc acaaatttca tcatctgaaa tctcttctaa tcgacgaagc       720
     tgcaaacttg gtgcgacatc taactattac ggatgcagct tacaacacag cgtgggagcg       780
     acttaatgaa agatataatc gtccacggca catcgtgaat tcatttatgg agcagtttat       840
     gaagctgcca acaacaacaa ggtctgatgc agcaaccttg cggaaggtgt cagacggcgc       900
     aaacgaaatc gtgcgtggtt tggatgccat tgaggaaaca ggacgagact gttggatcat       960
     ctacctggcg ttggaaaaac tggacgcaga tactcgacgc aggtggatcg aacgcagtgt      1020
     ggagtcagac tcacccacac tagaggaatt cttcaaattc ttggatgcgc gttgcgagga      1080
     gctggagcta agcaaacgcg aaacaactgg aggtaaaacg acagcctcta ttggtgacaa      1140
     aacaaagaag gtcacacatt cgttggttgc gcttgatgga aacaagtgca gcaaatgcta      1200
     ttccacagaa catcgtctgt atggatgtcc acaatttttg ggtatgtctg caggacagag      1260
     aatctcgttt gccaaggaga aatctctatg ctacaattgt ctgaaacctg gtcatggggt      1320
     cagaagatgc aaatcaacgt tcaactgcag acaatgtaaa gctcagcacc atacactatt      1380
     gcatctgcaa ggtacgcaac acgcaattgg tacaatcgct caaactggtg aggatcagga      1440
     tgatcccaac gcgcacatct caccggtgac tattagtcac atagcacaaa cagaaggctc      1500
     cgcagcaatt gtatgtgcac aaggcactgc aagttcaaca caatcaaatg gatggaacag      1560
     aagcaccctg cccacggcta tggtcaacgt tcaaaacgct aacggggatt tggtagcatg      1620
     ccgactcctt ttggacacag gctcagaact gtcgtatgta tctgaacgct gtatacacgc      1680
     acttggtttg gctcgtacgc catcccgcat attggtcact ggaatttcat cgattaaagc      1740
     agacacaaca aggggatgca gcaccctacg catccaatcc cgtatatcag aggatcaact      1800
     ggtagtccag gctcacgtgc ttggaaagat cacctcatca ttggaaaggc agagcatcga      1860
     cgcgtctgca ctacaagtct tcaacgatct acaactagca gattcacaat tcagcacaag      1920
     tggcccagtc gatattcttt tgggcagcga gcatgtttgg agtgctatta ctgggagaaa      1980
     gatatttgac aacaaaggca agctaatcgc tatttcatca atttttggat gggtgatcac      2040
     atcactgttt gcaccacggg cgagcaacac tatggccctc acaacaacag tcgacattga      2100
     cgccactctc agacgattct gggagctgga aagcattcat cgcaaggcag aagttcaacc      2160
     tgaggacaaa gaggtcgagg agcactttct caacacacac actcgagacg ataatggcaa      2220
     atacatcgtg gagcttcctt ttacatcatc agatcctgaa ttcgcagaca cccttcaagg      2280
     agctttgcag cggttcaaat cggttgaacg ccgtttagca caaaatcatc agctacgtaa      2340
     ggattacgta aacttcatga gggaatatca aagtctagga cacatgcgag aaatctcacc      2400
     gagcgaaatt cccaacgaaa ggagtttcta tctacctcat catcctgtat tgggtcggaa      2460
     actcagagta gtcttcgacg gctcataccg ggacgccaaa ggcaaggcgt taaacgacac      2520
     actctcgatc ggacccagta ttcagcgaga cctgtttgct gtgtgcctgc ggttccgtat      2580
     gcacaaatac gtattttcag cggacatagt caaaatgttc cgtcaaatct gggtgagcga      2640
     aaaacataga aactttcaga gaattgtatg gcgagaggat ccgtcagatc ccatcaagca      2700
     cttccaactt tgcacggtga cgtatggaac atcatgcgca ccattcctag cagttcgagt      2760
     actggaacaa ctggctgctg accaccagaa ggagtttcca actgcagcaa aaatcttgat      2820
     ggaagacttc tatgtggatg acgttctcac tggatccaat agtgaggatg agctgcgacg      2880
     caatcgggac gaactcgtcc aactgatgtc ctgtgctaag ctagagctcg ggaaatgggt      2940
     atcgaatacc aaatacattg atcggaggat aacacggatt cctcacactc atcggtaaag      3000
     gttctagggc tgcattggca ccctaagaag gacacattgt cgtacaatgt gaatctagca      3060
     aagagtccaa gctgcaccaa gaggcaagtg ttgtcggatg tgtcacgcat attcgaccct      3120
     ctcggtctat tagcaccaac cgtagttcaa ttcaaaatac tatttcaaaa actctggctg      3180
     ttgaatttga attgggacga cgaactaccg aacaaattag ccgacaagtg gctcaaatgg      3240
     cgagcagatt tagaaaacct accacaattc cagataccac gcttggtcga gagcgacacc      3300
     gacaagatcg aattgcacgg attttcagac gcatccacga aagcatactc agccgtagtg      3360
     tacagccgaa tggttaagga cgatggaacc atttcggtag ccatacttgc agcaaaaaca      3420
     agggtggcac ctttaaagca acaatctctg ccacgcctgg aactgtgcgg tgcacttctt      3480
     ctgagccaac ttttgcaatc catcaaggct ggattaaaac acaaggattt gacaatctat      3540
     gcatggagcg actccacaat agtcctatca tggctagcgt actcaccagc ccaactaaag      3600
     acgtttgttg ggaaccgcac cgccgagatc ttggaaacca tacctaagca tgcatggcgg      3660
     catgtggact caaaatcgaa cccagcggat tgtgcatccc ggggcttggg agtatccgag      3720
     ctcattgact tccaattgtg gtggaagggt ccttcatggc tgagggacaa ggatcaattt      3780
     ttggtaaagt tgaacaattc tcacaactgt tcttcacttt cagacaaacg catacaaagc      3840
     gagatcaaag ctaactgcct tgctgcgcag gtaattgtca cgacggacaa tcctttggat      3900
     aagcttctaa atcgcaactc atcttggctg aagcttatac acacgctcgg ttatgttttg      3960
     cgattcattc atcgcatgaa acacccgtct tcaaaacgaa catcaacttc tctcaccttt      4020
     gacgagatca agtcggcaag aattcgatgg ctgcaacacg ctcaagctgg ttttcaacag      4080
     gacttccagc tactactcgc taacaagcct ctaggaaacc aatcaaaatt ggtaaatctc      4140
     tcaccgttca tcgacaagga caatctgctc agagtgggag gacgaatcca acactcacag      4200
     ttgtcggcag aggcaaaaca tcccattttg cttccaaagg ctcatcggat caccttcctg      4260
     ataatagaac atgagcaccg agtcaacctg catcctggag tctcatctct cttcgtcatt      4320
     gtccggcaac gatattggat tttcggcgca cggaacctga tacgcaaaat cacacacaac      4380
     tgtttggcgt gctttcgaca gagacaacac acaatgcatc aacgtatggc agatctaccc      4440
     agcgtacgta taacgcaagc actgccattc gtaaacactg gatgcgacta tgcaggacca      4500
     attcttctga aggacgctaa ggtgcgcaag ccgcgcatca gcaagggata catatgccta      4560
     ttcgtatgta tggttacgtc ggcgatccat ctagaactcg ccaccgactt atccacggaa      4620
     acatttctgg cggcattgag acgatttttc tcaatacgag gcaaatgtac acgcatgtac      4680
     agcgacaacg gaacaaattt cggagccagg gatccccgga gctcaacaca acgcaaggat      4740
     cacgtagcga actcactagc agacgaaggt atccaatgga ccttcatccc acctcgtgct      4800
     ccacattggg gaggaaagtg ggaatcagca gttcgatgtg tcaaactgca tcttcgacga      4860
     gtcattggca gcagcacact aacacatgag caaatgcgca ccttgctggc gcagatcagt      4920
     gcggttgtca actcacgacc cttatgctac acgtcggata cagatagcaa ctatctgtca      4980
     ccagcccatt tcctgatcgg gcgaccattt acgacgatcc cggaggcgga tcttggccac      5040
     attcctgtgg gccgtttggg atactggcag agtatccaat cgatgtacca aggcttctgg      5100
     aaacaatggc accaggagta cctgactagt cttcagcagc gaccaaagtg gaccaaggaa      5160
     acacccaaca tcaagatcgg cagcgttgtg ctcgtcaagg agtccaacac accaccagca      5220
     tcatggcacc tagcgagggt gatcgaaacc tacccaggaa aggacaacgt cgtgcgagca      5280
     gtaaggctca agatggcatc aggagaattg acccggccaa taacgaaaat tgcggaatta      5340
     cctcattcag aaaccgtgtt tcagggtggg ccggga                                5376
//
ID   BEL-2_DBp-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DBp_;
KW   BEL-2_DBp-I; BEL-2_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 627-627 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 212 BP; 81 A; 40 C; 30 G; 61 T; 0 other;
     tgtttggaaa ctatcgctta gtaattaagt ttgctcatat tgccatcttt atattttaga        60
     cttaagatca aaacaatgtg tacacactta gaaataagca gcacctatgg caacattgcc       120
     aattttcttt aagtaccaat tagacagcga aacaagcaag aacaataaaa tatacagtcc       180
     actacaaaaa aggctctacg catttaggat ca                                     212
//
ID   BEL-2_DEl-I repbase;    DNA;    INV; 6343 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DEl_;
KW   BEL-2_DEl-LTR; BEL-2_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6343
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 502-502 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [5390-5965] - Integrase core
CC   'ACAAC' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1189..2472
FT                 /product="BEL-2_DEl-I_1p"
FT                 /translation="MATKDIEELKHQRDVCMKSINRTYRHLKEAKLSVNPV
FT                 ELECRLEILNTHIENASLLQNQIEVKDTKDVYREELEERAVMTKSLLISIL
FT                 NKCKQNNIEKSAPPANRPPQCRLPSVALPTFSGKHSEFKNFISLFETFVDK
FT                 DDTLHDIEKFNHLISCLAGDALGTVRAFQVTAENYPKALASLKRVYDNDCL
FT                 IFFDNISTLFNLQKIPQPSATALRTLIDTVTALYDSLLSIGDDRRITNAIL
FT                 IHLVMSKVDAGTKRKWEEQLDYTSLPLWSECEAALNRRYQHMVAEEASKPK
FT                 TVQQTQSNPKKNGNRSFSFVAARNDSVQCMYCNSAEHQIGNCASFAALTVQ
FT                 QRFDFAKRAPLCINCLRKGHTVEKCKSNRCRVCDSSHHTLLHIYPQTQISR
FT                 CHLLLSPRSCRSLHPRRMFCMRMHRIESFLQLLL"
FT   CDS           2705..6313
FT                 /product="BEL-2_DEl-I_2p"
FT                 /translation="MKNISGYHPDQAVNTSGWRVPENIQLADPFFFKPQKI
FT                 DMLIGAETFFELLSIGQIKQGPEFPILQKTVLGWIVSGRCASENNKNAEKM
FT                 VHLSCQEEALESIDTTLQKFWSVEDLPPKAKVHTPEQQLCQQHFEKNTQRL
FT                 SSGRFSVRLPFKSDPNTLGSSYEVAKRRFLSLERKLSKDPSLKKMYIEFME
FT                 EYVSLGHMSSTNDKIPNTPHYFIPHQCVLRPQSTSTKLRVVFDASSRTSTQ
FT                 VALNDILMVGPTIQEELYSTLLRFRLHKFALAADVKKMYRQVMVDEADRNF
FT                 QLIVWRRDPSESLKIFKLNTVTYGTSPAPFLAIRCLMRLGEMAQATHPKAA
FT                 KVIQNDFYVDDLLTGAGCVEDLQSLRDEVSQVLQEAGFELAKWFSNCPELS
FT                 ASDSAVMPLMADSDVTKTLGVVWLPVKDYFQFRLDDSFLDLRATKRNILSV
FT                 TARLFDPLGLLCPLVTKAKMLLQELWLRKLDWDESLPMQLLTSWETFKATL
FT                 LQLPKIKVSRFVNTDPQVPIQIHGFADASMRAYGACIYVRTQTAEGLKVSL
FT                 LTAKSKVAPLKTKTLPRLELCAAHLLADLYNRVRPLLNSPIENVFLWTDSE
FT                 ITLHWIKTHPSSLSVFVSNRVAEIQEWSEKAIWRHVPTKVNPADIVSRGCD
FT                 VEELTTSIWFGGPSFLLDSENNWPVNKHFELPADVMSMELRKSAIALVVSP
FT                 EPNYVLQKIESFSSHLKLLRVFVWVFRFIQRCRKVSKPFEKSISPRELDFA
FT                 FDKIVEVIQFHEFRDDISKIRKNKPVATNIQKLNPFLQENKLDWCSSTLLR
FT                 VGGRLLNAPIPYEAKFPLLLSKSSQFVRSYVSYLHVTNCHAGPRALVSRLR
FT                 EKIWLVNAQEVCRRTVRSCMRCFRCKPQLLTQIMGNLPADRLRALRPFNIC
FT                 GVDFCGPFSTTYRIRGKPPYKSYVALFVCFASKAVHLELVSDLTTDAFLLA
FT                 FQRFVSRRGIPEKVWCDNATNFVGADRHMREFRARLEEQGGGIETFASKKG
FT                 CEFAFIPPRAPHFGGLWEAGVKSAKHLFLRTVGQDLLTAEELGTLLTSVEA
FT                 VLNSRPLGALSSDPNDGEALTPGHLLIGGPLLAPPSAALPDQISLTCLRRW
FT                 RGVSSLRHRFWQRWSREYISSLQQRSKWHQGEPNLVVGALVVVAEDNLPPQ
FT                 QWRIGRVVAVHAGADSKVRVADVRTQDGEYRRAVHRLALLPVLG"
XX
SQ   Sequence 6343 BP; 1713 A; 1472 C; 1455 G; 1702 T; 1 other;
     tggtgacccc gacgtgatta gcagtagagt tcgcgagttt taattttttt cggtgaaaaa        60
     ctataaacat taccaacaac caaaaccaat ttattcgtgt cggttcggcc aataaattaa       120
     attcaacaat atttcgtcgc tggaaatttt ctgccgttcc tgaagttgcg cctgacgttt       180
     cggcaaattt aattgcttaa tttgctgctg ccgccaaatg gaagttaaaa aggaagttgc       240
     aattatcaag tcggccatcc aggtatagag tgccaaaagt tgaaagttaa tctgtggcgt       300
     tttgtcaatt gtgttttggc ccatctttca actttttgca ttcgtgtaaa aatcggtaga       360
     tagtgagcat tctaaccaag aaataaaaat ttgcatgtac taacaaccaa aattctgcaa       420
     taaacataat atatttcgaa ttatatgtga atcgctttgg cccataaaca agcaaataaa       480
     atactcgtcg tcgacccaat tagtgcgaac ttaattcccc caactttcgt cgtagtgagc       540
     accaatttag ggtataaata aaacagctgg aaaaaagtgc aaattgtgaa aagtgtagct       600
     ctcaaaaatt agcggcaata actttcgccg cagtttgtct gaacattttc ccgcgctttt       660
     cagaattttc ccgcgctttt ccaattttcc cgcgcttttc ataattttgc gcgcatttcg       720
     gcgtcaggct tatatattcg ttgcccttag ttatcggtca gtgtatcatt ctccgttagc       780
     atttgcctag gaagagccgc tagccgcgta cacatacaca cgcacaccga caccgctgcc       840
     gctatttcga gttatctttt gtcgttttcg ttctcgatcg ctgcagcagt gcaattttcg       900
     gtctgcctaa acgtttgttc gttttttcgg tacgcttgag cttgagcgtt agctccccta       960
     cagtgcgtgc gtgcggcata tactgtcgca gggtttatat aaaaaatata aaaaccctat      1020
     ttagatattt ttcgctgtaa ttctctcggc acttagctcc cttacaccgt gtgcgatcgg      1080
     tatattactc gttgattttt tattatatta tttaacaaat aaataattta ataaaaataa      1140
     atatttaaca cctcttcgat accaacaaaa taaatacaaa taaacgcaat ggcaactaag      1200
     gatatcgaag agcttaaaca ccaacgagat gtttgcatga aaagtattaa ccgaacttat      1260
     cgccacttaa aagaagctaa attatcagta aatccggtcg agcttgagtg tcgattagag      1320
     attctaaata cgcacattga aaatgcttca cttttgcaaa accaaataga agtgaaagat      1380
     acaaaagatg tataccgcga agagttggaa gagagggccg taatgacaaa gtcattgctg      1440
     atttcaattt taaataagtg caaacaaaat aatatcgaga aatccgctcc gccagcaaat      1500
     cgcccgcctc aatgccgtct gccgagcgtt gctctcccaa cttttagcgg aaaacactcc      1560
     gaatttaaaa attttataag ccttttcgaa actttcgttg acaaagatga cactttacac      1620
     gatattgaaa aattcaatca tttaatttcg tgtttagctg gagacgcttt aggaacagtt      1680
     agggcctttc aagtcactgc ggaaaattat cccaaagccc ttgctagcct gaagcgggtg      1740
     tacgataatg attgtcttat tttttttgac aacatatcga cactttttaa tttgcaaaaa      1800
     attccccagc cttcagctac agccttgaga accctcatcg acacggtcac agccttgtat      1860
     gactccttgc tgtctattgg ggatgataga cgcattacta atgctatttt aatacatctg      1920
     gtaatgagca aggtcgatgc aggaactaaa agaaaatggg aagaacagtt agattatact      1980
     tcgcttccac tttggagcga atgtgaggcg gccctcaaca ggcgatacca acacatggta      2040
     gcagaagagg cttccaagcc caaaactgtt cagcagaccc aatctaaccc taagaagaat      2100
     ggaaatagga gtttttcgtt cgtcgctgcc aggaacgact ctgttcaatg catgtattgc      2160
     aactcagctg aacatcagat tggaaactgc gcttccttcg cagccctaac agttcagcaa      2220
     agattcgatt tcgctaaaag agcaccctta tgcattaact gcttaagaaa gggtcacack      2280
     gtcgaaaaat gcaaatcgaa cagatgtaga gtgtgcgatt cctcacatca cactttgcta      2340
     cacatatatc cccaaacaca aatctcgcgt tgccacctcc ttctcagccc acgctcatgc      2400
     aggagtctcc atccacgtcg catgttttgc atgcgaatgc atcggatcga gtcattcttg      2460
     caactgctgt tgtgagcgtc caaaccaaaa gcggcgagtt tgtattagct cgagcgttgc      2520
     tcgactctgg ttcacaaata aactttgtaa ccgatgagct cgctcagagg ctcaaaatta      2580
     caagagagga cgtgtgcatg agcttgcgag gcattggtgg aactaatgcc caagccacaa      2640
     aaaaatacac acgattgtga agtcgcgagt agggaacagc caattgtcgt ccgatttttg      2700
     gattatgaaa aatatttctg gttatcatcc ggatcaagcg gtgaacacca gcgggtggag      2760
     ggtgcctgaa aatattcagt tggcagatcc attcttcttc aagccccaaa aaatagatat      2820
     gcttatcggc gctgaaacat tctttgaact tttatctatt ggccagataa agcaggggcc      2880
     tgaattcccc atcttacaaa agacagttct cggctggata gtgtcaggga gatgtgcctc      2940
     tgaaaataat aaaaacgctg aaaaaatggt acatctcagc tgccaggagg aagcgttgga      3000
     gtcaattgac acaaccctgc agaaattttg gtctgtggag gacttgccgc ccaaggctaa      3060
     agtccatact cctgagcaac aactctgtca acaacacttt gagaaaaata ctcaaagatt      3120
     gtcgtccggt agattttcgg ttcgtttgcc gtttaaatct gacccaaata ctcttggttc      3180
     gtcatacgaa gttgcgaaac gtagattttt gtcgctagaa aggaaattgt caaaggaccc      3240
     ttcgctgaag aagatgtata ttgaattcat ggaggaatat gtttcactgg gccacatgtc      3300
     ctccaccaat gacaaaattc cgaatactcc gcactatttc attccgcacc aatgcgtttt      3360
     acggccacaa agtacttcaa ctaagttgag agtagttttc gatgcatcga gccgtacttc      3420
     tacgcaggta gcgttgaatg acatcttgat ggtaggccca actattcaag aggagctgta      3480
     ctcgactctg cttcggttta gattgcataa gtttgccctt gcggccgacg tcaaaaagat      3540
     gtatcgccaa gtgatggtgg acgaagctga tcgtaacttc cagctcatag tatggagacg      3600
     agatccttct gagtccctga aaatctttaa gttgaacacc gttacatatg gaacttcgcc      3660
     agcacccttt ttggcgattc ggtgtttaat gcggctagga gagatggcgc aagcaactca      3720
     tccaaaagcc gcaaaggtta ttcagaatga tttttatgtt gacgatttgt tgactggcgc      3780
     cggatgcgtt gaggacctgc aaagccttcg agacgaagtt tctcaggtct tgcaagaggc      3840
     aggctttgaa ttggcaaagt ggttttcaaa ctgcccggag ttatccgcat ctgatagcgc      3900
     tgtaatgcca cttatggcag actcagacgt aaccaagacc cttggcgtgg tttggttacc      3960
     ggttaaagat tactttcaat ttcggttgga tgactctttc ctggatcttc gcgcgacaaa      4020
     acgaaatatt ttgtcggtga ctgctcgact tttcgaccca cttggcctct tgtgtccttt      4080
     ggtcacaaag gcaaagatgt tgttgcagga actgtggctt cgaaaattag attgggacga      4140
     gtcgctaccg atgcagttgc tcacgtcgtg ggagacgttt aaagcgacgc ttctgcagct      4200
     gcctaaaatt aaggtatcgc gattcgtcaa cacagatcca caagtcccga ttcaaataca      4260
     tggtttcgct gacgcttcca tgcgagcgta tggagcgtgc atctacgttc ggactcaaac      4320
     tgctgaaggt ttgaaagtgt ctttattgac cgccaaatcg aaagtagctc ccctcaagac      4380
     gaaaactttg cctcgccttg agctgtgtgc agctcacctt ttagcagatc tctataatcg      4440
     tgtcaggcca ttgctaaatt ctcccattga gaatgttttc ctgtggacag actccgagat      4500
     cactttacac tggattaaaa cccatccctc gtcgttgtcg gtttttgttt cgaaccgggt      4560
     tgcagaaatt caggagtggt cggagaaagc aatttggaga cacgttccca cgaaagtcaa      4620
     cccagcagac atagtgtccc gaggatgtga cgtagaggag cttacaacgt ccatttggtt      4680
     cggtgggcct tcgttcttgc tagactcaga aaataattgg cctgtaaata aacatttcga      4740
     actgccggct gatgtaatgt cgatggagct acgcaaatcg gcaatagctc tcgtagtcag      4800
     cccagagcca aattatgtgc ttcagaaaat agagtccttt tcgtcgcacc tgaagcttct      4860
     gagagttttc gtgtgggttt ttcgttttat tcaaaggtgc agaaaggtgt cgaagccctt      4920
     tgaaaaaagt atttcgccaa gagaactgga tttcgctttt gataaaattg tcgaagttat      4980
     ccaatttcac gaattcaggg acgacataag taaaattcgg aaaaataaac cggtagcaac      5040
     gaatattcaa aagttaaacc cttttcttca ggaaaataaa ttagattggt gctcctcgac      5100
     attgctacga gttgggggtc ggttattgaa tgctcctatc ccgtacgaag ccaaattccc      5160
     gttgttgctg tctaaaagct cacagttcgt cagatcctat gtgtcatacc tgcacgttac      5220
     gaactgtcac gctggcccac gagctctcgt aagtcgtctg cgcgagaaaa tctggctagt      5280
     taatgctcaa gaagtctgcc gacgaacagt tcggtcgtgc atgcgctgct ttcgctgtaa      5340
     gccgcaactc ttgacgcaaa ttatgggaaa cttgccagca gatagacttc gagctctccg      5400
     cccgttcaat atttgtggcg ttgatttttg tggtcccttc agcacaacgt atcgtatccg      5460
     tggtaagcca ccgtacaagt cgtacgtggc cttgttcgtc tgttttgcgt ccaaagcggt      5520
     ccacttagaa ttagtgtctg acctaaccac tgatgcgttc ttgttggcat ttcaaaggtt      5580
     cgtgagtcgt cgcgggattc cggagaaggt gtggtgcgac aacgccacca atttcgtcgg      5640
     cgcagatcgc cacatgagag agttccgagc ccgtctggag gagcaggggg gcggtatcga      5700
     aacattcgca tcaaaaaaag gatgcgagtt tgcgttcata ccgcccagag caccgcactt      5760
     cggcggacta tgggaggcag gtgtgaagtc tgcaaagcac ctgttccttc ggacggtagg      5820
     ccaagacctc ttgaccgcgg aggagctcgg aactctgctc accagcgtgg aggccgtgct      5880
     caactccagg cccctcggcg ctctaagcag cgacccgaac gacggcgagg ccctgacccc      5940
     cgggcatctg ctcatcggcg gccctcttct ggccccacca tcagcggcgc tcccggacca      6000
     gatcagcctg acctgcttgc gacgatggcg aggtgtctcg tctctcaggc acaggttttg      6060
     gcagcgatgg tcccgggagt acatctccag cctccagcag cggtccaagt ggcaccaggg      6120
     ggagcccaac ctcgtcgtgg gagcgctcgt cgtcgtcgca gaagacaacc ttccgcccca      6180
     gcagtggagg attggacgag tggtagcggt gcacgccggc gccgatagca aggttcgcgt      6240
     ggcggacgtc aggacgcagg acggggaata tcggcgagct gtccaccgac tggccctgtt      6300
     gcccgttctg ggctgaagga cgtcgtccct tcagaggggg cgg                        6343
//
ID   BEL-2_DEl-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DEl_;
KW   BEL-2_DEl-I; BEL-2_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-297
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 503-503 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 297 BP; 81 A; 68 C; 57 G; 91 T; 0 other;
     tgtttgcgca ctcggcgctt gtatttaaat cactagttgt agggcgagag cgggagccaa        60
     taaagctttc gtccgttcgc tcttgcgaat tcgccccgtc tctcgccacc gtagcataag       120
     ttaggttcta agagaaatta ttgaaatata atagtcagtg atcaatcgaa catcatcgta       180
     gccactcctt ttcgtcgcgc tttcgaaata gttttcacaa attcgcaatt taacatcgtc       240
     gaactactgc agtcacaagt tttcgcgtcg ttaatacaaa acagtattaa attttca          297
//
ID   BEL-2_Deu-I repbase;    DNA;    INV; 5815 BP.
XX
AC   AFPQ01005620;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_Deu_;
KW   BEL-2_Deu-LTR; BEL-2_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5815
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01005620; Positions   14934    9120.
XX
CC   Positions [4791-5381] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1466..4240
FT                 /product="BEL-2_Deu-I_1p"
FT                 /translation="MEYVRKHRICFSCLESGHMSRFCKRNSKCNVYGCQMG
FT                 HHYLLHDGVGNPTRPSQPHGRPWPNERSDRGRMVHAGADRRKVDKQVHQPD
FT                 DLAQRSPLTASAQTQDAWRKRDEGRQPSDGNGLPHRNLSCVDPDGGHLLFR
FT                 ILPVTLYGEDTQLDTYALFDEGSSVTLIDEELTRSLNLKGESRQLNIQWFG
FT                 GKSAKENTKMVSLQISEAGRPKRHALKNVYAVSNLNLPMQSLRREDVKAAK
FT                 ASARLPMKPYRNAVPRILIGLDHAHLGIPMQNRSFGAGGPYAAATKLGWVV
FT                 FGPVRSQMSSPMQRSCLLAVPQYDHLEKMVSDYFEIENFGVKPAPPVAASG
FT                 DARALGILNETTRRVGERYQTGLLWKDDKVSLPDSYNMALKRLVGIERKMR
FT                 RDDSFARAYKSIMEDYVNKGYARRLEQQEVAADNRDKIWYLPHFGVENPNK
FT                 PGKIRLVFDAAAKVGNTSLNSVLLKGPQQFKSLPAVLFHFREGAVGVCADI
FT                 KEMFHQVLIQPQDRCAQRFLWRNGDDRRDPDLFEMVVMTFGAACSPCSAHH
FT                 VKTINASRYAQADPRAVQAINEYHYVDDYVDSFSDEKEAIAVSERVRKIHA
FT                 EAGFDLCRFSSSSESVVKALNPLGSNKNVEWNEAEEKILGMYWHPAMDDFK
FT                 FSVKYLRVPSRVMTGERAPTKREFLSLVMSTFDPIGFLSCFMVTAKLLMRE
FT                 IWRRGVQWDEPLPDELAKAFESWRLEMDYVRDFRCPRYYFGTGCVRELQLH
FT                 VFVDSSQSAFAAVAFWRATYDNDDVRSYFVCSKTKCAPMKTMTIPRLELQA
FT                 AVLGTRLMDTVRREHDVSISRCVLWTDSKTVLHWISSTHRRYKQFVGNRVA
FT                 EILESTEVSQWRWIPSAENVADDATRPQRHVDLSQGARWMSGPSFLRESEE
FT                 QWPSHLQVIATVHTPLRRDAV"
FT   CDS           4233..5783
FT                 /product="BEL-2_Deu-I_3p"
FT                 /translation="MPCEFTLVIANEFIFLQRFSNYNRLVRTTAWILRFIR
FT                 RCRGLSDESEAYGITATECAEAERKLIQRAQADTFADEVQGKAVAKGSQLR
FT                 GLSPYVDHDGIIRARGRIDAAECVPFNARRPIILSHKHALAEMIVRHYHRK
FT                 MKHQNLDATISEIRTRFWITNLRRVLRSVMATCNLCKLRRVRPIPPLMGPL
FT                 PEDRLEPNGWPFKYTGLDYFGPLFVTIERRTEKRWVALFTCLTTRAVHLEI
FT                 AHDLSTDSCIIAMRNFMCRRGPVVRLRSDNGKNFIGADREARKFDEVFEPE
FT                 KIQDELSSKGIEWIFNCPANPAAGGIWERMVQCVKKVLAHTVKEVAPKEHV
FT                 LESFLIEAENIVNSRPLTHLPVTVDQEAPLTPNDLLRGVANVPDLPGDRGE
FT                 QPVKCATRKQWRIARMMRDRFWKRWVHEYLPTLVRREKWCEHVEPMRPGNL
FT                 VYICDPAIPRREWRKGVVEEVCPGADGVPRRAAVRTTNGDRAKLIMRPISR
FT                 LAILDVVNAVASPGWGCRGTD"
XX
SQ   Sequence 5815 BP; 1535 A; 1411 C; 1674 G; 1195 T; 0 other;
     tttcttttat tcgcactcct ttatcgtgca atgccgactt cacattcacc ccggcggagc        60
     ccccgaattg gacagacggg agctcccgca actgcaacta cgaccaccgc gaccacatca       120
     gccggcactc cgaagaatgt gccgggctta tcgggcggtg agctgcagcg gccacggact       180
     ccaaagcaac cgggattaat cccaagtggt gctccaaagc ctgatagatc aggccaggat       240
     acggacacca caaccgccaa gtttgcggcg ctgatggaga ggatcgctac cttggaaagg       300
     gagcttcaaa aggcgaggtc aggtgaaggg caagatgcag ccgcgaggga tcccgttaga       360
     aacggatcaa gcggtatagg agcgagcggt gcggcgaatg cgccgccatg tttgagcgga       420
     acgccagggc agaacttgag tggaaatctg ccgccattgt tgagtggaaa tctggcaccg       480
     aatttggctg agtcagtgac gccattttta catgaacagt tgccgccatt attgagtgga       540
     aacctgccgc cacaatcgag tggaaatctg gcaatagggc aacaagtcac actcagtaca       600
     aacagtacaa cgttaagcta ttccacacca tgctgcgtga cggctactgt gcagccagca       660
     ctaagctaca tgcaagctac gcgggaacct cttcgcaacc tgatggtacc cccgcaatca       720
     actggttcat acggaatagc ttcgccgagc cgttaattgg atggacgccg cgcagactgc       780
     ctgatcttcc agagttcgaa ggtcagcctg aggaatggcc aatattccaa tgcgcgttca       840
     cggagacgac ggcggcgtat aattgtactg cgttggagaa caaccagagg ctagtgaaag       900
     ccctgaaggg tgaagcgcga gcatctgtca agtcgctgct tatacacccg aataacgttc       960
     aggctgtaat ggatcagcta cgtttccgat atggacgccc ggagcaactg atacgtagcc      1020
     aactggaaag cgtgcgagag gtgcagccga tccaagaaca caatataata aagatcgtgc      1080
     cgtttgcaac acgggtcagc aatctcgcag cgtttttaca gtcaagcccg aacggggagc      1140
     agcacctagg aaatcctaca ttgatggaag agctgatcgc caagctacca ctgagcaaaa      1200
     ggttggattg ggccaggcac gccgccgtaa tagggtgcta cccaactgtc gcgcacttga      1260
     gcgaatggct aaacgaactc gctaaattag tgtgcactat tacgagcagc gacagcaagg      1320
     atcctaagcg tagggtattg cacgccagca ccagtcagaa ggatcaggat ctatttgaag      1380
     atcatcccag gagttgccca atttgcgagg ggcaacacac tatcaaggac tgtaaggatt      1440
     tcaacacgct actccgactg cccgtatgga gtatgtaaga aagcatcgga tttgtttctc      1500
     gtgcctggag agcggtcaca tgtccaggtt ctgcaagaga aacagcaagt gcaacgtcta      1560
     cggatgccag atggggcatc actacctcct gcatgacggg gtgggcaacc ccacacggcc      1620
     atcgcaaccc cacggtcgac catggccaaa tgaaaggagc gatcgcggtc gcatggtaca      1680
     tgcgggcgct gacaggagga aggtggacaa gcaagtacat cagccagatg atctggccca      1740
     gagaagtcca cttacggcat ctgcacagac gcaggatgca tggcgcaagc gggacgaagg      1800
     ccgtcagcca agtgacggga atggattgcc acatcggaac ctaagttgcg tcgatccgga      1860
     tggaggacac ttactattcc gtattttgcc cgtgacgctg tacggggagg atacgcagct      1920
     ggatacctac gcgctgttcg acgaaggttc gtccgtgacc ctgatcgacg aggagctcac      1980
     tcgaagccta aacctaaaag gcgagagtcg gcagctcaac attcaatggt tcggtggcaa      2040
     gtcagcgaaa gagaacacaa agatggtcag cctccagatt agtgaagcgg gcagaccgaa      2100
     acgccatgct ttgaaaaatg tgtatgcggt ctctaacctc aatcttccga tgcaaagtct      2160
     gcgtcgggaa gatgtcaaag cggcgaaggc ttctgcacgc ctgccgatga aaccgtatcg      2220
     taatgcggtc ccgaggattt taatcggact agaccatgcg cacctaggaa tacctatgca      2280
     aaacaggagc ttcggagcag gaggacccta tgcagccgcc accaagctag gatgggtggt      2340
     ttttggtcct gtaagaagtc agatgagttc accaatgcaa agatcgtgcc tcctagccgt      2400
     cccacagtat gatcatctcg agaagatggt cagcgactat ttcgaaatag agaatttcgg      2460
     agtgaagccg gcgccaccag tcgcagctag tggcgacgca cgggctttgg gaatcctgaa      2520
     cgagacgact aggcgagtgg gcgaacgata ccaaactgga ttgctgtgga aagatgataa      2580
     agtgagcctg cctgacagct ataacatggc actcaaaaga cttgtcggca ttgaaaggaa      2640
     gatgagacgg gatgacagct ttgcacgggc ctacaagtcg atcatggagg actacgtcaa      2700
     caagggttac gcacgacgcc tggagcagca ggaagtggca gccgataacc gggacaagat      2760
     ctggtacctg ccgcacttcg gggtcgagaa cccaaacaag cccggaaaga tccgtctagt      2820
     cttcgatgcc gcagccaaag tgggcaatac atctttgaac tcagttctac tcaaaggccc      2880
     acaacagttc aagtccctgc cagccgtgct cttccatttc cgggaaggag cagtcggggt      2940
     ctgcgcagac ataaaggaga tgtttcatca ggtgctgata cagccccagg atagatgcgc      3000
     ccagagattc ctgtggagga atggagatga ccggcgagat ccagatctgt tcgaaatggt      3060
     tgtgatgacg ttcggagccg cttgttcgcc gtgctcagcg catcatgtga agaccataaa      3120
     cgcttcaaga tacgcccaag cagatcctcg cgcggttcag gccatcaatg agtatcacta      3180
     tgtagatgac tacgtggata gtttctcgga cgagaaagaa gctatcgctg tatcagaacg      3240
     agtaaggaaa attcatgctg aggccggttt cgatttgtgc cgcttctcat caagttcgga      3300
     aagtgtggtc aaggctttga acccactagg atccaataag aacgttgaat ggaatgaagc      3360
     ggaggagaaa atattaggca tgtactggca cccagcgatg gatgacttta aattcagcgt      3420
     aaagtacctc agggttccca gcagggtgat gaccggagaa cgtgcaccca ccaagagaga      3480
     attcctaagt ctggttatgt caacatttga cccgatagga ttcttgagct gcttcatggt      3540
     aaccgccaaa ctattgatgc gtgagatttg gcggagagga gttcagtggg acgagccgtt      3600
     gccggatgag ttagccaaag cgtttgagag ctggaggctg gaaatggatt acgtgagaga      3660
     tttccgctgt ccacgctact actttggcac gggatgcgta cgtgaactgc agctacatgt      3720
     gtttgtggac tccagccaat cggcgttcgc agcagttgca ttctggaggg cgacttatga      3780
     caacgatgat gtgcgatcct atttcgtgtg ttccaaaacg aaatgcgccc cgatgaagac      3840
     gatgacgatc ccgcgcctgg agctccaagc agctgtatta ggaaccaggc tgatggacac      3900
     cgtaagacga gagcacgacg tatcgatcag cagatgcgtg ctatggactg actctaagac      3960
     cgtgctgcac tggataagca gcacccaccg gcggtataag cagttcgttg gaaaccgggt      4020
     ggcggagatc ttagagtcaa cggaggtgtc tcaatggagg tggataccgt ctgccgaaaa      4080
     cgtggcagat gacgcgacga ggccacagcg ccatgtggac ctcagccaag gggcaaggtg      4140
     gatgagcggg ccatcatttc tgcgggagtc ggaagaacag tggccaagcc atctccaagt      4200
     gatcgcgaca gtccacactc cgctgagaag agatgccgtg tgagtttaca ctggtaattg      4260
     ccaacgagtt tatatttttg cagagatttt cgaattataa tcgattggtc aggaccacag      4320
     cgtggatcct caggttcata cgacggtgcc gtggattgag tgacgagagt gaggcctacg      4380
     gtattacagc tactgagtgc gcggaggcag aacggaaact gatccagcgc gcccaggctg      4440
     atacgttcgc agatgaagtt caaggaaagg cagtggcgaa aggcagtcag ttacgaggac      4500
     tatcccctta cgtcgaccac gatggaatca tacgagcgcg tggacggatt gatgccgccg      4560
     aatgcgtccc attcaacgca cggcgcccga tcatactgtc gcacaaacac gcactggcag      4620
     agatgatagt tcgtcactac cacaggaaga tgaagcacca gaatctagac gcgaccataa      4680
     gcgagatccg gaccaggttc tggataacca atttaaggag agttttacgg agtgttatgg      4740
     caacctgtaa cttatgcaaa ctccggagag tacgaccaat tccgccattg atgggtccgt      4800
     tgccagagga ccggctggag ccgaatggat ggccattcaa gtatactggc ttggactact      4860
     ttggtccgct gtttgtgacg attgaacgtc gcactgagaa gaggtgggtc gcactcttta      4920
     cttgtctaac caccagggct gtccacctgg agatagccca cgatttgtca acagattcct      4980
     gcatcatcgc tatgaggaat tttatgtgcc gccgtggacc ggtggtcaga ttgaggagcg      5040
     acaatggaaa gaactttatt ggagcagatc gtgaggccag aaagttcgat gaagtcttcg      5100
     aaccagaaaa gatccaggat gagctgtcat ccaaaggaat cgaatggatc tttaactgtc      5160
     ccgcgaaccc agctgccggc ggcatctggg aaaggatggt ccaatgtgtg aagaaggtgc      5220
     tcgcgcatac tgtgaaggag gtggctccta aggaacacgt cttggagagc tttcttattg      5280
     aggcggagaa tattgttaat tctcgtccgc ttacccacct tccagtcact gtggatcagg      5340
     aggcaccgct aacgcccaac gatctgctaa gaggagtggc taatgttccg gaccttcctg      5400
     gagatcgcgg agagcagcct gtcaagtgcg ctactaggaa gcagtggcgt atcgcacgga      5460
     tgatgagaga cagattttgg aaacgttggg tacatgagta tctaccgacg cttgttcgca      5520
     gggagaaatg gtgcgagcat gtcgagccta tgcgcccagg gaatctcgtg tacatctgtg      5580
     atccggccat ccctcgtcga gaatggagga aaggcgtcgt ggaggaagtg tgcccaggag      5640
     cggatggagt accacgacga gcggcggtac gcactaccaa tggcgatcga gctaagttaa      5700
     tcatgcgtcc catctccaga ttggctatcc tggatgtggt gaatgcagtt gcatcaccgg      5760
     ggtggggatg tcgtggaacg gattaacata tcgctcaagg tttagtaaat ttaaa           5815
//
ID   BEL-2_Deu-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   AFPQ01005620;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_Deu_;
KW   BEL-2_Deu-I; BEL-2_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-341
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01005620; Positions    9119    8779.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 341 BP; 97 A; 57 C; 81 G; 106 T; 0 other;
     tgtagcgcca agtatttcag tatttgttat cgatgttgta aatcgttaga gagatcatat        60
     tgtaaagcta aatgcggtca cacgaaatgg tgaattgtaa gccagaatct cccgctcaga       120
     tttattccga ttggagagat caaagagact gggaggcgag actgcggtat gtaaaactga       180
     ttgtgaaaat aggttaaatc tgatatatgt atttcataca gaataaaaca tcgtcgtttg       240
     tttatgctat tgttctacgc tacaagactg gctttcttgt ttcggtgttg gctaagcaac       300
     gttaaaggca actcccaggg gatctctttc ggtcggcgtc a                           341
//
ID   BEL-2_DFi-I repbase;    DNA;    INV; 5656 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   25-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DFi_;
KW   BEL-2_DFi-LTR; BEL-2_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5656
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 879-879 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4691-5272] - Integrase core
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..3431
FT                 /product="BEL-2_DFi-I_2p"
FT                 /translation="MAENDSVGARSAAVPSDLDFYKAKADATLRQVEALKS
FT                 YLESDEAVNFDVTDLQVRLDFVDQMQVDFDKSQTAVERLDLQELCSDARSK
FT                 FANIYLAVKSQISRELGKQRRFSVVNSTALPHVGGDSRPAARATRLPEFKL
FT                 PRFSGAYIDWPDFYAMYNTIVGNNDDLSNVEKFQHLRSCLDGTALDTIRSL
FT                 EPTEANYEKAIELLVSRFDNKLLHFQAHIRSICGISGVEQGSAASLRRLSD
FT                 QMNSHLRALNTMATTQEIMDGLLIYLVASKLDRHTREKWEEGLQANKLLKW
FT                 KDMATFLEKRCRMLENIENAMVIQTPSKQVGKPNTNKNIHNALVASSLNTS
FT                 SCSMCESRDHFISKCAQFLNLSPTLRYKEAKRLHLCLNCLRKGHGMQQCKS
FT                 GSCKRCHSKHNSLLHIDSNAIATPSPPTTTTNTQNVVSLLSSSFSEAPPVV
FT                 SSDSKTDYVLLATAIVYIRNRSGAFVPCRALLDSCAQINIVTSRFVKQLQL
FT                 TTRQANTSISGVGESSFSSNATVDLEAHSRDRKYRTALTAVISGKITDYQP
FT                 HFDLNALGWNIPPNLVLADPWFYSSQRIDLLIGAGIFYELLCVGQMRLAEN
FT                 LPILQKTRLGWIASGGISFSNMKRSALAVTTEPVIQSETDSLPDIVKRFWE
FT                 IDSYCGSPIVATDEDVLCEQLFQNTFSRLSSGQYSVRLPAKASFDMLGDSY
FT                 GRALRRFKTLEGKLLKDLELKSQYAAFIKEYIDLQHMSLASEQSVASQYYL
FT                 PHHCVQKPDSTTTKLRVVFDGSAKTTSGYSLNDLLFAGPSIQPKIFNTLLR
FT                 FRFFKVALCGDICKMYRCVRVTSPDNYLQSILWRDNPNQQVKAYTLDTVTY
FT                 GTKPAAFLAIRAMQQLSYDEEAEFPLAAKIVRRDFYVDDLISGGDSIEEAA
FT                 QIREQVKELLSKGHFPIRKWCSNEAAALEGEPEIDREKTLRFHDGTDVLKA
FT                 LGLYWDAKSDHLLFSLSGTMTESGSTKRSILSAVAKFYDPLGLIAPIVTS"
FT   CDS           3521..5656
FT                 /product="BEL-2_DFi-I_1p"
FT                 /translation="MKQISAVNHLKFPRFVMQPNSSLEIHAFCDASLAAYG
FT                 ACVYVRSEIHGCVSTHLLCSKSRVSPLKTLTIPKLELCAALLLSELISNIA
FT                 LTISSDCNFYCWSDSTITLSWIRQAPSDFNIFVSNRIAQIQDRTKGMIWRH
FT                 VPTHWNPADILSRGCSPLELLESNLWREGPPFLRLDSSCWPNITPVVDNLP
FT                 ERRRMVLVVTEKQDISYDCKFQNSFGKLQRVFGYIYRFWLLKFQNQTRRKG
FT                 PLAVDDVKGGTHLLIKGIQRVFFAEDYKALRKNKQVASNSKLSSLHPILDD
FT                 SGLIRVGGRLQNSLLDYDARHPILLPKNHPVTQAIVAHFHHKFLHAGPQSL
FT                 LAALRQRFWPIGGRKTVAAIVNKCIRCFRLKPRMMEHIMAPLPASRVQPSR
FT                 PFTTTGIDFCGPFYSKSEVRNRPPAKCYVAVFICFATKASHLELVEDLSTA
FT                 SFIAALKRFTSIRGKPNTIWSDNATNFVGARNELQELRQIFLADPPNIELR
FT                 NDLLSNGINWQFIPPRSPHFGGLWEAAVKAAKYHFHRVVGRSVLTFHELRT
FT                 LVCEVSAMLNSRPLCPISENPSDLEVLTPGHFLIGTAFNAIDEPDITHLNI
FT                 DRLSRWQRVCQMQQAIWHKWSTAYLSLLQERGKWRSEKANLSPGSIVIIKD
FT                 DNLPSLQWRMGRVESIVLGPDGVARVAVIRTAAGIIRRAVGKLAVLPFETT
FT                 SSVSVTLPAGGA"
XX
SQ   Sequence 5656 BP; 1484 A; 1330 C; 1278 G; 1563 T; 1 other;
     aattagttgc attcctctga acatttggtg accccgacgt gatctacgtg gggtgtgttt        60
     tttatttcgt tttcgttttc acaaatcggt gaaaaggcct atcagtgcat ttggacacca       120
     cttcgcaatt cggtgaagag gcctacaaac atacatacgt acatatattc ctgtgcttgg       180
     gtattatttg gcgcgctttc ttttgtgatc ttgttcgtat acataaccac agtttgaact       240
     cggttatata aagtgcagtg catatataag ccgtgttaag cgaggtcagt gaacgcttac       300
     gaatttgttc cgttgcattt tcgtcgacat ttcgtctctc ttgcattcag aattcgtgca       360
     gttgcatcgg cagcttacag tgatagtgac tttcgtatac tctttttgaa agagccatgg       420
     ctgaaaatga ttcggttggt gcaagatccg cggcggtacc aagtgacttg gacttttata       480
     aagcaaaggc tgatgctacc ttaagacagg tagaagcttt aaaaagctac ctggagtcag       540
     atgaggctgt caacttcgac gtgactgatc ttcaagtgcg acttgatttt gtcgatcaaa       600
     tgcaagtgga ctttgataaa agtcaaaccg cagtcgaaag gttagacttg caggagttgt       660
     gcagtgacgc tcggtcaaag ttcgcaaaca tctacctcgc ggtaaaatcg caaatttcgc       720
     gtgagcttgg caagcagcgt agattttcag tcgtgaattc tacagccctt ccacatgtcg       780
     gtggtgattc gagacccgct gcgcgtgcca caaggctccc agagttcaag ttgccaaggt       840
     tcagcggtgc ctatatcgat tggcctgatt tctacgcaat gtacaacacc attgtgggca       900
     ataatgatga cctgagcaac gtggaaaagt tccagcatct tcgttcatgc ttggatggca       960
     cagcgttgga cacaattcgt tcactggagc ccacggaagc taactatgag aaggctattg      1020
     aattactagt ttcgagattc gataacaaac ttttgcattt tcaggcacac atacggtcaa      1080
     tctgcgggat ttcaggtgtg gagcaaggat cggcagcaag cttacgacgc ttaagcgacc      1140
     agatgaattc gcatctgcgt gcgctgaata ccatggcaac gacacaggag atcatggacg      1200
     gtcttctgat ctatctggta gcttcgaagt tggatcgcca cactcgagag aaatgggaag      1260
     agggtctgca ggcaaataag ctgctgaagt ggaaggatat ggctacattc ctggaaaaga      1320
     ggtgccgcat gttggagaat attgaaaacg ctatggtaat ccagacacct agcaaacagg      1380
     tgggaaaacc aaacactaac aaaaatattc ataacgcact cgtagcatca tcattaaaca      1440
     cctcatcatg tagcatgtgt gaaagtagag atcatttcat ttctaaatgc gctcagtttt      1500
     taaacctcag tcccaccttg cgatataagg aggctaaaag gctgcacttg tgtctaaatt      1560
     gtttgcgcaa aggccatggt atgcaacagt gcaagtctgg ttcttgcaaa cgctgccatt      1620
     cgaagcataa ttcgttgctt cacatcgatt ctaatgccat cgccacaccc tctcctccaa      1680
     ctaccactac taacactcaa aatgtcgttt cgcttttatc atcatcattc tctgaagctc      1740
     cacctgttgt ctcgtcagat agtaagaccg attatgtgct gcttgccact gccatcgtat      1800
     acatcagaaa tcgatctggt gcatttgtcc cctgcagagc cttgttagat tcttgtgctc      1860
     aaatcaacat cgtcacttct cgtttcgtta agcagttgca actcactact cgtcaagcaa      1920
     acacatctat ctctggagtt ggtgaatcat cattttcatc aaacgcaacc gtcgatctcg      1980
     aagcacactc cagggataga aaatatcgta cagcactgac tgcagtaatt agtggcaaaa      2040
     ttacggatta tcagcctcat ttcgatttaa acgccctagg gtggaacata ccaccaaatc      2100
     ttgttcttgc tgatccgtgg ttctacagta gtcagcgtat cgatttgtta ataggagctg      2160
     gcatctttta cgaattgctt tgcgttgggc aaatgcgatt agccgaaaat ctgcccattt      2220
     tgcaaaaaac gcgtcttggc tggatcgcat ctggagggat ttcgttctca aacatgaagc      2280
     gttcagcact tgcagtgacc actgagcccg tcatccaatc ggaaaccgat tccttgccag      2340
     acattgtcaa acggttttgg gaaatcgaca gctactgtgg atctccaatt gtcgcaactg      2400
     atgaagatgt attgtgcgag cagctattcc agaatacctt ttctcgactc agttcagggc      2460
     aatactcagt tcgtttgcct gccaaagcca gttttgatat gctcggcgat tcatacggtc      2520
     gtgccttacg tcgatttaag acgctagagg gcaaattgct caaggatttg gaattgaagt      2580
     cgcaatacgc tgcattcatc aaagaatata tcgacctaca gcatatgtca cttgcttctg      2640
     agcaatcagt agcctcgcaa tattacttgc ctcatcattg tgtgcagaag ccagatagta      2700
     caaccacaaa gttacgagtt gtattcgatg gctcagctaa aacgacctca ggatactctt      2760
     taaatgattt gttgtttgca ggtccctcaa tacagcccaa aatcttcaac acactgcttc      2820
     gttttcgttt tttcaaagtt gcattatgcg gggacatctg caaaatgtat cgatgtgtcc      2880
     gtgtcactag ccctgataac tatttgcagt ctatcttatg gcgtgacaac ccaaatcaac      2940
     aagtcaaggc ttatacgctc gatacggtta cctacggcac taagccggct gcatttctgg      3000
     caattcgtgc tatgcagcag ctatcctatg atgaggaagc tgagttcccg ttggcagcca      3060
     aaatagttcg aagagacttt tatgtagacg atctcatatc tggaggtgac tcgatcgagg      3120
     aggcagctca aattcgtgag caggtgaagg aattgctatc caagggtcat tttccaattc      3180
     gaaaatggtg ttcaaatgag gcagcagctt tagaaggcga gccagaaatt gatcgcgaga      3240
     aaacgcttag atttcatgat ggaactgatg tcctcaaagc actcggctta tattgggatg      3300
     caaaatcgga tcacttgctt ttctcattgt ctggaactat gacagaaagc ggttcaacga      3360
     aaagatcgat tttatcggcc gttgccaagt tctacgaccc tctcggattg atagcaccga      3420
     ttgttacaag ttgaaaatat ttctgcaaat tctttggaaa gacaaactgg attgggacga      3480
     gtcgcttccg caatctttgc actcctcatg gctggagcac atgaagcaga tttcagcggt      3540
     caatcattta aaatttcctc gtttcgttat gcagcccaac tcgtcgttgg agatacacgc      3600
     tttttgtgac gcaagtttag cagcgtatgg cgcctgcgtt tacgtcagat ctgaaattca      3660
     tggctgtgtc tcaactcatt tactctgttc caaatctaga gtttcgcccc taaaaaccct      3720
     cactataccc aaattggaat tatgcgcagc gctattgtta tcagagctca tctcaaacat      3780
     tgccctaacc atttcatctg attgtaattt ttattgttgg tctgattcaa ccataacgct      3840
     ttcttggatt cgtcaagctc catcagattt taatattttt gtatccaaca gaattgcgca      3900
     gattcaggat cgcaccaagg gcatgatatg gcgtcatgta cccacacact ggaaccctgc      3960
     cgacatatta tcgcgtggat gttcacctct cgagcttttg gagtcgaacc tgtggcgaga      4020
     gggacctcca tttttacgtt tggattcatc gtgctggcca aatataacgc ctgttgtgga      4080
     caacttgcct gaacgtcgtc gcatggtttt agttgtaacc gagaagcagg atatctcata      4140
     cgattgcaaa tttcaaaact catttggaaa gctgcagcga gtttttggat atatataccg      4200
     gttctggctt ctcaaatttc aaaatcaaac gcggcgcaaa ggaccactcg cagtcgatga      4260
     cgtcaaaggt ggcacacatc tactcatcaa aggaatccag cgtgttttct tcgcagagga      4320
     ctacaaagca ttgcgaaaga acaagcaggt tgcatcaaat agcaagctct cgtcgttgca      4380
     tcctattctg gatgactcag gattaattcg tgttggtggt cgcttgcaaa actcgcttct      4440
     ggactacgat gcgagacatc ccattttgct gccaaaaaat catcctgtta ctcaagcaat      4500
     cgtcgctcat ttccatcaca agtttttgca cgcaggaccg caaagtctac tagctgcctt      4560
     gcgccagagg ttttggccaa ttggaggccg aaagacagtc gcagctatcg taaacaaatg      4620
     catcaggtgt ttcagactga agccgagaat gatggagcac atcatggccc ccttgccggc      4680
     cagccgagtg caaccaagtc gtccttttac aacgactgga atcgactttt gtggcccatt      4740
     ctactcgaaa tcggaagtca ggaatcgacc gcctgcgaag tgttacgtgg cagtctttat      4800
     ttgcttcgca actaaggcct ctcacttgga attagtagag gatttatcaa ccgcatcgtt      4860
     catcgccgct ctcaagcgtt tcaccagcat caggggcaag cccaacacga tctggtcgga      4920
     caacgcaaca aactttgttg gtgcgagaaa cgagttgcag gagctcaggc aaatcttcct      4980
     ggctgatcct ccaaatatcg agcttcgcaa tgacctgttg tctaatggaa ttaattggca      5040
     gttcataccc ccccgctcgc ctcattttgg tggcttgtgg gaggccgccg taaaagcagc      5100
     caaatatcac tttcataggg tggttggaag atcggtttta acttttcatg aacttcgtac      5160
     tctcgtttgc gaagtktctg ccatgcttaa ttctcgacca ctctgcccca tttcagaaaa      5220
     tcctagcgac ttggaggttc tcacgcctgg acattttctt attggcactg ctttcaacgc      5280
     catagacgaa cccgacatca cccatctcaa catcgatcgg ctaagtcgct ggcagcgagt      5340
     ttgccagatg cagcaggcga tttggcacaa gtggagcact gcctacctat cgctactcca      5400
     ggaacgtggg aaatggcgat cagaaaaggc aaatttgtcg cccggcagca tagtcatcat      5460
     taaggacgac aatcttcctt cactccaatg gcgcatgggc agagtcgaga gcatcgttct      5520
     tggaccagat ggcgtggccc gtgttgcagt tattcgaaca gctgcaggca tcatcagaag      5580
     agctgttggc aagttggccg ttctgccctt tgagaccacc tcgtctgtca gcgtgactct      5640
     tccagcgggg ggagca                                                      5656
//
ID   BEL-2_DFi-LTR repbase;    DNA;    INV; 386 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   25-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DFi_;
KW   BEL-2_DFi-I; BEL-2_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-386
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 880-880 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 386 BP; 123 A; 96 C; 52 G; 115 T; 0 other;
     tgttcggagc agaaccccta acttgtaaat tctatcctaa attcaaatgt ccaactgcta        60
     atgtaacgta acgtaacgta aacgtaaagt tgtttaccaa cacccgcata attgcaatcg       120
     cgcctaactt tgcttatctt gttttatcta tcttcattat catctcttct tttcgcaact       180
     cttaaccgat tcgcattcaa ctttcgttcg ttctcgctac accctcgcaa gcaagttgtc       240
     ggtcgcgatc ttgtatacgc aaaacacata aacgttgtac acaagaataa accaaataat       300
     actcagagac ccaaatacaa aaccacatct catttaaatc acaaaacatt ggcctttttt       360
     tggaagtgca taaagcggta gcaaca                                            386
//
ID   BEL-2_DGri-I repbase;    DNA;    INV; 7540 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DGri_;
KW   BEL-2_DGri-LTR; BEL-2_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7540
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1285-1285 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4769-5350] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..7513
FT                 /product="BEL-2_DGri-I_1p"
FT                 /translation="MASEKRTINELLDVQQDISDEIVRLISNYKKDSAERK
FT                 SQAGYHKIKADSLNERWNIVQENDEVIRKSGELPKNHEYFTYYEDIRTTVL
FT                 KYLEVIKNDAETINQATSKKLEIGDGQRQQSTLEPKVIALCRRQRAMIASL
FT                 HRTLHQSTPIEHAALELIRNLWTQIQEVHFRLYEEVENPEENGYDTKEYLQ
FT                 AEEDVQRALALKSIKQCTNDINLPRITIPKFDGDILKWTQFFDMFVSMVHG
FT                 TNMPTIQKMWYLKTSVIGEAERLIRQIDLKEDNYLHAWNMLVDAYHNPRDI
FT                 ASTVLNRFLMQQAINDNTKSLKELYIVTLESLASLKGLGLDISTWDPILIA
FT                 VIRNKLDSTNKTLYEQSLSNSKQIQKLDTMLQFLEQRVRVLASGSKTHSNA
FT                 KRDSMGATCASSSTTRKNCLYCKKADHIIFRCDVFRAKTAAERLNWIQRQK
FT                 LCVNCLKGDHMAKVCPSRFKCFKCQKRHNTLLHLENSSLEQQNPIVASASS
FT                 KNINLLATAKVIVQGNNGQQATFKALLDSGSQINVISERLASLLSLKRHDS
FT                 TLRIEGIGRQQRTSRARVNLLVKSLYNDFTMRIEAFILPHIITDQPSQSIN
FT                 NKDWNMPATLPLADPQFNKPGKIDMLIGAEHYYALLLPQQHKIPSGPIMQK
FT                 TKLGWVVAGKIKESKTSAAICAVATGEETNTIMERFWTLDNFETAERHRTP
FT                 TEKECESHFIENLQTAADGRFIVKLPFAEHSSALGPSLETAEKRFLALERR
FT                 TDSKIWKAYVDFMTEYEQLGHMKAVPRKLLPTNHYFIPHHCVLKPDSSTTK
FT                 LRVVFDASCKTSTGKSLNDILQVGPTVQSDLMSILLRFRTHKYVFTADIEK
FT                 MYRQIWINPEHQFNQMIVWRKNPNDELKYFRLKTVTYGTASAPFLATKCLN
FT                 HLASLHTSRSPLGSSALRDDFYVDDCLTGADSIQEAIQIRQELVKILLPNG
FT                 FKLRKWCSNNEQILQGIPKDDIVSDIKLDETLEHYSVKTLGLIWMPKRDQL
FT                 CGRTQSSTAKRITKRVICSELAKIFDPLGLFAPVVVKAKIFMQRLWESKLD
FT                 RDDELPANLQNEWKDYREDLQSLNSMQIPRHIYDGNTPVTKELHTFVDASE
FT                 QAYGAAIYVRATYKNKQISVRLLCSKSRVAPTAKQSLPRLELCAALLGAEL
FT                 ADRIRRDLNLDSTTVPGYFWSDSTVVLSWINAPSSTYHTFVANRIAKIQAV
FT                 TSQNNWRHVSSANNAADVLSRGISARKLHKHSLWLYGPLFLHGTPDKWIAP
FT                 PVISPSNLERKTKHISLAATQPTIGEELYTCRHSNSFRKLQRIVAYMLRFC
FT                 YKRYRSATTTLCKMELDCARNIILQTIQRAEFTAELKDLKRHNTVDKKSPI
FT                 SSLSPIQGSDGLMRVGGRLEQAPLPYNARHQILLPYNDPIVKMILRELHED
FT                 NMHCGAQALRATARQQYWILNDKTMSRNIVHNCVKCNKAKPKLMNQIMGNL
FT                 PVDRVTPTRPFLTTGVDYCGPIWIHHKVRGKRPDKAYIAVFCCFSTKAVHL
FT                 ELVSDLTTNAFLGALRRFLSRRGKCQTIYCDNATNFVGANNQLKELGESIF
FT                 GEKAQAEIINHCNKKQVAFKFIPPRAPSFGGLWEAAVKSAKRLLVTTTNTA
FT                 SLTFEELNTVIIEIEAILNSRPITPMSNDPTDNTALTPAHFLIGETLTAPP
FT                 DVNTDRNEKSLLKRWELVSRLKQGFWKQWSQEYLQELQARHKWKAVNPNIK
FT                 EGMLVLVKEDNIPVMSWPMGRIVHTYPGQDNHVRVVDVKTASGIYKRPITR
FT                 LAPLFPEDMAKKRPIKETEDTDKNDAPPVQRKRLTSPTITSSVLILLFMLP
FT                 LVLTNSVSVTRFNTKPGIYYEKIGTTKRAVSDWTMVIYYELEPYWRDMKTF
FT                 NSGINEFKYICPELNNNHICPYVSISQHFRHLYDELQMTNSLMQHTRKRRS
FT                 PFDAVGNIANSLFGVLDSNYANEMTKVIEKVKTNEEFLLTLLKNQTSVLDS
FT                 TINIVKKSRSASDKRLRLLEQQVAIISQTRGKYTGARLTETYLALTTQLTL
FT                 LAASLQRMQSEIVDVLTGIRHRTISPTLISPDQLKEQLDQIRDHLPPDQML
FT                 PVTSSDVIHLYRIMRAEGTVTDTHVIFRIRLPLVSTSILELFNIVPIPMWD
FT                 STSWRLFELKTPIIAVNSHRDQFMGLTTDDLQRCRTLPNEEYICFDHQAMF
FT                 NVNNRCEFQLFNNKTPTMCQVTHRATKMVWSKTHHPNNWIFATHSVMELQA
FT                 VCNGTPSTIQLMDTGLLSLSSGCTARNSEISISTFNIIISHVRKGYAHFGN
FT                 IIEPNTTQINISENKVQEDKDLDDLQLTLNALNKQELPDQISSVQHHHIAA
FT                 YAVLVVSVLVLLAYTLRKQRFWTLQSTATRNEAAITPVPSASPRRFTLDLD
FT                 DG"
XX
SQ   Sequence 7540 BP; 2571 A; 1723 C; 1502 G; 1744 T; 0 other;
     gtttatgtgc tgactgcttc ccttcaaata tacacaaacg ttttggtgac cccgacgtga        60
     ttcctgcagt tgtcaactag gcgacaaaag gataaccaac ctccaaaaat ccacatttga       120
     agttgtcaac aaggcgacaa tcaaaaggat acctgcaatc tcctaacaca gttcactata       180
     tcggtgttag tgagaccatc tgaagttgtc aactaggcga catatcagga taaaagtgtg       240
     ctctcgttag ttgaacgacc acagcactta tatcaaagtc caccaagcga cctgattaag       300
     aaacagatat accagtacat atctgtaaag gtccaacaag cgacaaaaat cagtcaaaat       360
     ggcatcagaa aaaagaacca tcaatgagtt gcttgatgtc cagcaagata ttagcgatga       420
     gattgtacgg ctgatatcta attataaaaa ggattccgct gagagaaaat ctcaggccgg       480
     ctatcacaaa attaaagcag attctctcaa tgagagatgg aatattgtcc aagaaaatga       540
     cgaagtcata agaaaatctg gcgagctacc gaaaaatcat gaatacttca cctactatga       600
     ggacataaga acaacagttc taaagtactt agaagtaatc aaaaacgacg ctgaaaccat       660
     aaatcaagcc acaagcaaga agcttgagat tggcgatgga cagcgtcagc aatcaacctt       720
     agaacccaag gtgattgcat tgtgccggcg acaaagggca atgatcgcat cactacatcg       780
     cacattgcac caaagcaccc ctattgagca cgcagcatta gagctcataa ggaatctatg       840
     gacacaaatt caagaggtcc attttcggct gtatgaagaa gttgaaaacc cagaagaaaa       900
     tggatatgat acaaaggagt atctacaggc agaagaagat gtacaaaggg cattagcttt       960
     aaaaagcatt aagcagtgca ccaatgacat aaacttgcct cgcataacca tccccaaatt      1020
     tgatggggat atattaaaat ggacacaatt ctttgatatg tttgtgtcca tggtacacgg      1080
     gaccaacatg ccaacaattc aaaaaatgtg gtatctaaaa accagcgtga tcggtgaggc      1140
     agaaagacta atacgtcaaa tcgacttgaa agaggataac tatcttcacg catggaacat      1200
     gttggttgac gcgtaccaca atccaagaga catagcatca acggtattga accgattttt      1260
     aatgcaacaa gccattaacg acaatacaaa atcgcttaag gaattataca tagtcacttt      1320
     ggagtccctt gcatctctca agggactcgg attagacatc tcaacgtggg acccaatttt      1380
     aatagcggtc atacgaaata agctggacag cacaaataaa acgctgtacg agcaatcatt      1440
     aagcaactcg aagcaaatac aaaaactgga caccatgctc cagtttcttg aacaacgagt      1500
     tcgtgtttta gctagcggaa gcaaaacaca cagcaatgcc aaaagggatt cgatgggagc      1560
     aacttgtgca tcctcctcaa ctacaaggaa gaattgcctc tattgcaaga aggctgatca      1620
     tatcatattt cggtgcgacg ttttccgtgc aaagacagcc gctgagagat tgaattggat      1680
     tcaacgacaa aaactatgcg tcaactgcct caaaggagat cacatggcaa aggtttgccc      1740
     aagtcgtttt aaatgcttca agtgccaaaa acgacacaac acgctgctgc atttggaaaa      1800
     ttcttcattg gagcaacaaa atccaattgt agcatcagca agtagcaaaa atataaacct      1860
     acttgcaaca gcaaaggtaa tagtccaagg aaataatgga caacaagcta ctttcaaggc      1920
     tttgctggat tctggatcac agattaacgt aatatcagaa cgactcgcct ctttattatc      1980
     tttaaaacga cacgattcca cactacgaat tgaaggcatc ggtagacaac aaaggacaag      2040
     cagagctcgt gtaaatctgt tggtaaagtc attatacaac gactttacaa tgcggatcga      2100
     agcatttatt ctaccgcaca ttattacgga tcagccatcc caaagcataa ataataaaga      2160
     ttggaacatg ccagcaaccc taccgttggc agatccccaa tttaacaaac ctggcaaaat      2220
     cgacatgctt atcggtgcgg aacactatta tgcactattg ctcccacaac aacacaaaat      2280
     accctctggt ccaatcatgc aaaagaccaa gttaggatgg gttgtggctg gaaaaataaa      2340
     agaatcaaag acgtcagcag ccatttgtgc agtagctaca ggagaagaaa cgaataccat      2400
     aatggagcga ttctggaccc tagacaactt tgaaacagca gaaaggcatc gtacaccaac      2460
     tgaaaaggag tgcgagagcc atttcattga gaacttgcag actgctgcag atgggagatt      2520
     tatcgtaaaa ttgccgtttg ctgaacattc ttcagccctg gggccctcgt tggagactgc      2580
     agaaaaaaga ttcctcgcac tagaaagaag gacagattca aaaatctgga aggcatatgt      2640
     ggacttcatg actgaatatg aacaattggg tcatatgaaa gctgtccctc gaaaactcct      2700
     tccaacaaac cattacttca tccctcacca ttgtgtgctg aaacctgaca gcagcaccac      2760
     aaagctaaga gtagtcttcg atgcatcatg taagacatcg acaggaaaat cattaaacga      2820
     catattgcaa gtaggaccca cggtacaaag tgatctcatg tcaattttac tgagattcag      2880
     aacacataag tacgtattta cggcagatat cgaaaagatg tatcgccaaa tatggataaa      2940
     cccggaacac caatttaatc aaatgatagt ttggagaaaa aatccaaatg atgagttaaa      3000
     atactttcga ttaaaaacgg tcacatatgg aacagcatcg gctccgtttt tggctactaa      3060
     gtgtctaaat cacttagcct cacttcatac aagcagatca ccattaggat cctctgcctt      3120
     aagggatgac ttctacgtag atgattgcct cacaggagca gactcgatac aggaagcaat      3180
     ccaaattcga caggagttgg taaaaatact gctccccaac ggattcaaat tacgcaaatg      3240
     gtgctcaaac aatgagcaaa ttcttcaagg aattcccaag gacgacatag taagcgatat      3300
     taagcttgac gaaacactgg aacactacag tgttaagaca ttgggcctta tttggatgcc      3360
     aaaaagggat caactttgcg gccgcacaca aagcagcaca gcaaaaagga ttacaaaacg      3420
     tgtaatttgc tcggagctgg caaagatctt cgaccctcta ggcctgttcg ctccagtcgt      3480
     ggtaaaggca aaaattttta tgcaacgact ctgggaatca aaactcgacc gggacgacga      3540
     attacctgcg aatcttcaga acgagtggaa ggactataga gaggacttgc aaagccttaa      3600
     ctcgatgcaa attccaaggc acatatacga tggaaatact ccagttacga aggaattgca      3660
     cacatttgtg gatgcttcag agcaggcata tggcgcagca atatatgtac gcgcaacgta      3720
     caaaaacaag caaatatctg tgcgtctact atgctcaaag tctcgagtgg ctccaaccgc      3780
     aaaacagtca ctacctcgtt tagaactatg tgctgcatta ttgggtgctg agctcgcgga      3840
     cagaattcga cgcgatctca accttgactc caccacagtg ccaggatact tttggtcgga      3900
     ttctaccgtt gttctttcat ggatcaatgc cccgtcttcc acatatcata cgtttgtggc      3960
     caaccgaata gcgaaaattc aggcagtgac aagtcaaaat aattggcggc atgtatcgtc      4020
     tgccaacaac gcagcagatg tgctctcaag aggaatatcc gcacgaaagt tacacaagca      4080
     tagtctatgg ctctatggac cactcttttt gcatggcact ccagacaaat ggatagcccc      4140
     tcccgtcatc tctcctagca acctggaaag gaaaacaaag catataagcc tagctgcaac      4200
     tcaaccaaca ataggcgaag agttgtatac ctgtcgacac agcaactcat ttcgtaagtt      4260
     acaacgcatt gtggcttaca tgttgcgatt ctgctacaag cgatacagat cagcaacgac      4320
     cacgctgtgt aaaatggaac tggactgcgc tcgcaatata attctacaaa caatacagcg      4380
     agctgaattt acagctgagc tgaaagattt gaagcgccac aatacagtgg acaaaaagag      4440
     tcctatctca tcactctcac caatacaagg gtcagatgga ctcatgcgag ttggaggtag      4500
     attggagcaa gccccactcc cttacaatgc aaggcaccag attttgctgc cttacaacga      4560
     tccaatagtg aagatgatat tacgagagct gcatgaagac aacatgcact gcggtgctca      4620
     agccttacga gcaactgcta gacaacaata ttggatcctg aacgacaaaa ctatgtcgag      4680
     aaatatcgtt cacaactgtg tgaagtgtaa caaggcaaaa cccaagttaa tgaatcaaat      4740
     tatgggtaat ttgccagtcg atcgagtaac accaacacgc ccgtttctca ctacaggcgt      4800
     agactactgc ggaccaattt ggattcatca taaagttcgc ggaaaaagac cagataaggc      4860
     atacatagcc gtattctgtt gcttctctac aaaggcggtc cacctcgagc tggttagcga      4920
     tctgactaca aatgcctttc taggagccct gcggcgcttc ctaagccgcc gcggcaaatg      4980
     tcaaaccatt tattgtgaca atgccaccaa ctttgttgga gcaaacaacc aactaaagga      5040
     actaggagaa tcaatatttg gcgagaaggc tcaagcagag atcatcaatc actgcaacaa      5100
     aaaacaagtt gccttcaaat tcataccgcc acgagcgcca tcatttggag gtctatggga      5160
     agctgcggta aagtctgcaa aacgactact ggttaccacg acaaataccg catctctaac      5220
     attcgaagaa ttaaacacgg tgatcatcga aattgaagcg atcttaaact ctcgcccaat      5280
     aacaccaatg tcaaacgacc ctacggacaa cacagccctc accccagctc attttctgat      5340
     tggtgaaacg ctgactgctc cccccgatgt caacacagac cgcaacgaaa aatccttact      5400
     aaaacggtgg gaactagtat ccagactcaa gcaaggattt tggaagcaat ggtcacagga      5460
     atatttacaa gaattgcaag ccagacataa gtggaaggcc gtcaacccca atatcaagga      5520
     aggcatgctt gttctagtca aggaagacaa catacctgtg atgagttggc caatgggacg      5580
     cattgtacac acatatccag gccaggataa tcacgttcgt gtggttgacg ttaaaactgc      5640
     ctcaggcatc tacaagcgcc ccataaccag gcttgcgccg ttatttccag aagacatggc      5700
     caaaaaacgc cccatcaagg aaaccgagga cacagataaa aatgatgctc cacccgttca      5760
     acgaaaacgg ctaacgtcgc caaccataac ctcgtctgtg ctaatcctgc tctttatgtt      5820
     acccttggta ctgacaaact cagtatctgt gacacggttc aacacaaagc ctggaatcta      5880
     ttatgaaaaa attggaacaa cgaagagagc agtatccgac tggaccatgg taatatacta      5940
     tgaattggaa ccatactggc gcgatatgaa aacatttaat tcaggcataa acgaattcaa      6000
     atacatatgc ccagaattaa ataataatca tatatgtcca tatgtatcca tatctcagca      6060
     ctttcgtcac ttgtatgatg aattacaaat gacaaattca cttatgcaac atacacgaaa      6120
     acgccggtcc ccatttgatg cagtgggtaa cattgcgaac agtctattcg gagtattaga      6180
     ctcgaactac gctaatgaaa tgaccaaggt gatagagaag gtaaaaacaa acgaagaatt      6240
     tttactgaca ttactgaaga atcaaacttc ggtacttgat tcaaccatta acattgtcaa      6300
     gaagtcaaga tctgcatctg acaagcgact aagactactt gaacagcaag ttgctatcat      6360
     tagccaaact agaggaaaat acactggtgc acgtctcacg gagacttacc tggcgttaac      6420
     aactcaatta acactgttag cagccagcct tcaacgcatg caatccgaaa tagtggacgt      6480
     acttactgga attcgccacc gtacaataag cccaacattg atttctcccg atcaattaaa      6540
     ggaacaattg gatcaaatac gggatcattt gccgccagat caaatgctac cagtaacatc      6600
     atctgacgtt attcacctgt acagaattat gcgagcagaa ggcacagtca ccgacactca      6660
     tgtaatattt agaataagac taccactagt gtcaacatca atattagaac ttttcaatat      6720
     tgtgccgatt ccgatgtggg actcaacaag ctggcgacta tttgagctta aaacacctat      6780
     tatagctgta aacagccaca gggatcaatt catgggactc acaacagatg atctacaacg      6840
     ctgccgaaca ttaccaaatg aagaatacat atgctttgac catcaagcta tgtttaatgt      6900
     taataatcgg tgtgagtttc aactttttaa caacaaaaca ccaacaatgt gtcaagtaac      6960
     tcatagagca accaaaatgg tatggtcaaa aacacaccat cctaataatt ggatctttgc      7020
     aacgcattct gtaatggaac tacaagccgt atgcaacgga accccgtcta ctatacaact      7080
     gatggacacc ggactcctat cgctgtcatc aggttgtact gcacgcaact cagaaattag      7140
     catcagtact ttcaacatca ttataagtca tgtgagaaag ggctatgctc attttggcaa      7200
     cataatcgag ccaaacacga ctcaaatcaa catatcagag aacaaggtac aagaagataa      7260
     ggatctggat gacttgcagc taacattgaa cgcactcaac aaacaagagc tgccagacca      7320
     aataagttca gtacaacatc atcatatcgc cgcttatgct gttttagtag tatccgtcct      7380
     tgtgctgctt gcctatacac tacggaagca acgcttttgg accttgcaat caacagctac      7440
     aaggaatgag gctgccatta cacccgtgcc atcagcatcc ccaaggcgat tcacactgga      7500
     tctagatgat ggttgatcac cgattcaacg gccgggagaa                            7540
//
ID   BEL-2_DGri-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DGri_;
KW   BEL-2_DGri-I; BEL-2_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-490
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1286-1286 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 490 BP; 139 A; 113 C; 98 G; 140 T; 0 other;
     tgtttagatt cattttaaat cataagccag ttgtacgctg cagatagcgc agcgtacaca        60
     gcaaataaag tacacccaat ccatgggttg cgataagaaa tatgttcaca ccatctgtcg       120
     agcggcctgc acttgagcgg cctgcacttg agcggcctgc acttagcaga gagcagctca       180
     gtcagcgtcg taaataagat cattttaaga catggtatct gtgcacgcat aggttaccat       240
     tgattgttta ggtcaacccg cagatagcat aactagtcct aagcaaacat tatcttcgaa       300
     aatttctgta tataaacgat gcattttttc ttcaataaag tgagtgtctt ttggagtgtc       360
     ttcagagtct tagcacatac aagtctactc attcatttct accatcgcat acactgtgcg       420
     caacgaagga cctccctctc cgtaagtcca actagttaca agtgctagtt gcgacgcctt       480
     ttagtagtca                                                              490
//
ID   BEL-2_DPer-I repbase;    DNA;    INV; 5368 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DPer_;
KW   BEL-2_DPer-LTR; BEL-2_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5368
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5368
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1469-1469 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..5342
FT                 /product="BEL-2_DPer-I_1p"
FT                 /translation="MKALVHRLIQQRGACKSQLTRVAAEAQEFVQSCTSVQ
FT                 TLEHKLDRLVATFNRFMELSEELVQYNDEDEYVDPDLDIPEYEKRFFSAHS
FT                 IFTEAIRDRSSHENEHDNSNLLLSXTVERLFEGQTQLLERIRDSSGTTELQ
FT                 FEKIRIPTFSGRYEDWCQFSDLFLGSVDKKSSLSKCQKFHYLKSYLDGEAL
FT                 SLIKHIPVSDANYQDAWERLENRYNKKSLIARSFIQNFLSLPTAKGSNIAE
FT                 LRKIVDTADESIRGLHALSCDSRDVWLIHILLSKLDPECKEAWATSSESCK
FT                 ENVTINDLFGFVFARCDALESCQDPKLIQDTHTVLNKRRAISHHVDVPNTS
FT                 ARDCVYCHEQHSLYACTQFKALDVVDRRKFARDGNLCFNCLSRSHQVKECN
FT                 STNTCRLCKLRHHTLVHPEDIRSVTASADVNNSADSPVRSSSFPADADPAV
FT                 VSHHTLERKFVAKSQAILPTILATIVDSWGNETTCRILLDTGSTITMVAES
FT                 FIQRIGLPRTHARIPVVGLGANPAGVTRGRATFTLLSRTSSASVVVTGLIM
FT                 NTLTSSIPAQRIESNTPMWKRIRDLPLADPTFGKPGEIDVILGADQLWNLY
FT                 TGQRKEFGSEYPIALHTNFGWVITGSYHLSSDAHNHALAHHAHEDLDTLVR
FT                 SFMDMERVQPSDATIDASDPAEQHFVHTHARRNDGVYIVQYPFKESAPPMG
FT                 STLPQALRRFSSLERKFRKFPALKQQYVEFMEDYIQRGHMEVIPSTTVENG
FT                 PANHNYLAHHAVFKPDSTTTKCRVVFDGSGEDCNGSSLNSRLHIGPPIQRD
FT                 LLGVCLRFRQHRYVFCTDIEKMFRGILVSEDHTHYQRIVWRKEETATLDHY
FT                 RLLTVTYGLASSPFLAVRVLKQIAQDHADLYPKAAAVLVRDAYVDDIPTGC
FT                 DSIDDLIALKDELILLLSQAQFKLRKWSSNCWSLLKSLPQDICEYPLEALE
FT                 GDSPTQYVKVLGIRWDPAVDELSFKLTIPDATGVLTKRILLSELAKIYDPL
FT                 GLLAPTTVFLKVLFQDSWLSSVDWNEPLPAQLCARWQQFVAEVHLLESCRI
FT                 PRYLSSPLQATELHGFADASSHAYAAVIYSRVRFNNDYAVTLIAAKTRVAP
FT                 IKPISIPRLELNAAHLLSKLMSLVKQALTIPISSTSCWSDSEIVLHWLSSP
FT                 PRTWNTYVCNRTAEILEACPRSCWQHIRTEDNPADCASRGLLPKDLVEHQL
FT                 WWNGPPWLSQSHRTWPPAKAKFALSTEDAERMEVKVKPQVNLHISNEGNDL
FT                 NCMINKASSWSHLLRTLSYCFRFVHRLRCKDRLSSFLSSWELQYARSRVIK
FT                 HVQMEFFQVEYRQLSTGQALSQKSKLIHYTPFVDDQGILRVGGRIGNSMTT
FT                 YDAKHPILLPKESPVAVLIARHQHVTSLHAGVEFMFHTLRQKYWILGARNI
FT                 VRKIVFNCKICFLQRKGTSTQLMADLPAFRVQPTRCFLHSGLDYAGPVTIK
FT                 TSAGRTPKFGKAWFAIFVCLSTKAIHXELVSDLTTPAFIAAFKRFWSRRGP
FT                 ISDLYSDNGTTFHGARKELTEMQRIAVSQSQDEEIANFLTSQDINWHFIPP
FT                 SAPHFGGLWETGVRSIKLHLRRVIGSSALTFEEYSTILTQIEGLLNSRPLC
FT                 APSDHSLDPLTPAHFLTGQPHMSVPEPSLLDVNINRLQRWRQLQAKVQGFW
FT                 KRWNLEYLTSLQPRTKWQQESNDITVDTLVVLKEPNQPPSKWLLGRITEVH
FT                 PGQDERVRVVTVKTARGVYKRPITKLAVLPLF"
XX
SQ   Sequence 5368 BP; 1370 A; 1376 C; 1243 G; 1377 T; 2 other;
     tagcaaattt tggtccttcg agccggatct ccgcgtttga gtttatttat atacatattg        60
     agtgataccg ttacccgctg tttgccatga aggccctagt gcatcgtcta attcagcaac       120
     gtggggcctg caaatcccaa ttaactcgcg tggctgcgga ggctcaagag tttgtacagt       180
     catgtacttc tgtgcaaaca ttagagcaca agttggaccg acttgttgca actttcaacc       240
     gctttatgga gctgtctgaa gagctggtcc aatataatga tgaagatgaa tacgtggatc       300
     cggatttgga catccccgaa tatgagaaaa ggttctttag tgcgcatagt atcttcactg       360
     aagccatacg tgaccggagc agtcacgaga atgagcacga caactcaaat ctactgctat       420
     cgamcactgt ggaacgctta tttgagggac aaactcaact tctggagagg attcgggact       480
     catcgggaac cacagagctg cagttcgaga aaatacgcat tccgacgttt tcgggcagat       540
     acgaggattg gtgtcagttt agtgacttgt tcttaggctc agtcgacaag aagagtagtc       600
     tgtccaagtg ccaaaagttt cattatttga aatcctatct ggatggtgaa gcgttgtctc       660
     tgataaaaca tattcccgta tcggatgcca attaccagga cgcatgggag aggctcgaaa       720
     atcgctataa caagaagtca ctgattgctc gttcgttcat tcaaaacttt ctttcgttgc       780
     caaccgcaaa gggttcaaac atcgccgagt tgcgtaagat agtcgacacc gccgacgaaa       840
     gtatacgtgg tctacatgcg ctgagctgcg acagccgcga tgtgtggctg atccatatct       900
     tgctctcaaa gctagacccg gaatgcaagg aagcgtgggc cacctccagt gaatcgtgca       960
     aggaaaatgt gaccataaat gacctgttcg gctttgtctt cgcccgttgc gatgcacttg      1020
     agtcttgtca agatccaaag ctaatccagg atacacacac ggtgctgaat aaacgtcgtg      1080
     caatttctca tcatgtggac gtgccaaata cgtctgctcg tgattgtgta tattgtcacg      1140
     agcaacacag tctttatgcg tgcactcaat tcaaggctct ggatgttgtg gaccgccgca      1200
     agttcgcaag ggatggtaat ttgtgcttca attgtctaag ccgatctcat caagtcaagg      1260
     agtgtaattc cacaaacacg tgccgtctgt gtaagctgag gcaccacact cttgttcatc      1320
     cagaggacat acgctctgtc acggcttccg ctgatgtcaa taactccgct gactcacccg      1380
     tccgctcgtc cagtttccct gctgacgctg atcctgccgt ggtcagccat catacattgg      1440
     agaggaaatt cgtggccaag agtcaggcca tattgccaac gattttggcc actatagtcg      1500
     actcctgggg caacgagacc acctgcagga tactgttgga tactggttcg actataacga      1560
     tggtcgccga atcatttatt caacgaattg gtttgccgcg cacccacgct cgtataccag      1620
     tggttggtct aggcgcaaat cctgctgggg ttactagagg tcgcgccaca ttcacgctgc      1680
     tctcccgcac aagctcggcc tcagtggtgg taacaggtct gattatgaac actttaacct      1740
     cctcgattcc agcccagagg atcgagtcta acacaccgat gtggaaaagg attcgtgatc      1800
     tacccttagc ggaccctaca tttggtaaac caggcgaaat cgacgtgatc ttaggagctg      1860
     atcagctttg gaacctttac actggacaac gcaaagagtt tggttctgaa tatcctattg      1920
     cacttcatac taattttggt tgggtcatta caggcagcta ccatctcagt agtgatgctc      1980
     acaaccacgc actagcacat cacgcgcacg aggatctgga cactttggtt cgatcgttca      2040
     tggacatgga acgagttcaa ccaagtgacg ctaccattga tgctagtgat cccgctgagc      2100
     aacacttcgt tcatacgcac gcccgcagaa acgatggcgt gtacatcgtc caatacccgt      2160
     tcaaggaatc tgcccctccg atggggtcca cactgccaca agcactacgc cgcttttctt      2220
     ctctcgagcg gaaatttcga aaatttcctg cgctcaaaca acagtatgtc gagtttatgg      2280
     aggattatat acaacgagga cacatggagg tgattccttc tactaccgta gaaaacggtc      2340
     ccgccaatca caattactta gcacaccacg cagtatttaa accagatagc accaccacga      2400
     aatgccgagt tgtattcgat ggctctgggg aggactgcaa tggatcttca cttaattcac      2460
     gactacacat cggaccacct attcaaaggg atttacttgg agtatgtcta cgtttccgtc      2520
     agcatcgcta tgtgttttgt acggacattg agaaaatgtt tagaggcatc ctggtttcag      2580
     aagatcacac gcattaccaa cggattgtct ggcgaaagga ggagactgct acactcgatc      2640
     attatcgatt gctgaccgtg acgtatggtt tagcgtcttc gccgttcttg gctgttcgag      2700
     ttctcaagca gatcgcgcaa gatcatgccg atttgtatcc gaaggctgct gctgtgcttg      2760
     tacgagacgc gtacgtggat gatatcccta ctggttgcga tagtatcgac gatctcattg      2820
     cactcaaaga tgaattaatt ttgctattga gccaagctca atttaaactt cgaaaatgga      2880
     gttcaaactg ttggtcacta ctcaaatcgc tgccacagga catttgtgag tatccacttg      2940
     aagccctaga gggagatagc ccaactcaat atgtcaaggt tcttggaata cgctgggacc      3000
     cggctgtgga cgagctttcc ttcaagttga ccattcccga cgccacaggg gttctgacaa      3060
     aacggatttt gctgtccgag cttgccaaga tctacgatcc actggggttg cttgccccca      3120
     caactgtatt tctaaaggtt ctctttcaag atagttggct gagctcggtc gactggaacg      3180
     aaccactacc cgcgcagcta tgcgcacggt ggcaacagtt tgtagctgaa gttcatttac      3240
     tggaaagctg tcgcataccc cgctacctat cctcgccact tcaagcaacg gagctgcatg      3300
     gattcgccga tgcttcatct catgcatacg ccgctgtcat ctacagtcgc gtgagattca      3360
     ataatgacta cgctgtaaca ctgatcgccg caaaaacccg ggtggcaccc atcaaaccta      3420
     tctccatccc acggctcgag ttgaatgccg cccatcttct gtcgaaattg atgtctctgg      3480
     ttaagcaagc tctaactatt cctatttcca gtacttcgtg ttggtcagac tccgaaattg      3540
     tactacattg gctctcatca cccccacgga cttggaacac ttatgtttgt aatcgcactg      3600
     ctgagattct agaagcttgc ccacgtagct gctggcaaca cattcgcact gaggacaatc      3660
     ccgcggactg tgcatcacgc ggacttctac caaaggatct ggtagaacat caactgtggt      3720
     ggaatggacc accgtggctt tcccaatcac atcgcacttg gccacctgct aaggccaagt      3780
     tcgcactgtc gactgaggac gctgagcgga tggaagtaaa ggtcaagccc caagttaatc      3840
     tacacatttc caatgaagga aatgatctta actgtatgat caacaaagct tcctcctggt      3900
     cacatctctt gcggacactt agctattgct ttcgtttcgt acatcgactt cgttgcaagg      3960
     accgcctgtc atcattttta tcgtcatggg agcttcaata tgcccgctct agggtaatca      4020
     aacatgtcca gatggagttc ttccaagtgg agtacagaca gctgagcact ggacaagccc      4080
     tttctcaaaa atccaagttg attcactaca ctccatttgt tgacgaccaa ggaattctgc      4140
     gcgtaggagg acgcattgga aattcgatga caacctatga cgcaaaacat cccatacttc      4200
     ttccaaagga atcaccagtc gctgttttaa tagctagaca ccagcacgtc acatcgttac      4260
     acgctggagt cgaatttatg tttcacacgt tgagacagaa gtattggatc ctgggagccc      4320
     gtaacatagt ccgcaaaatt gtattcaact gcaagatatg cttcctccag cgcaaaggaa      4380
     cgagcacaca actcatggct gatcttcccg cctttcgcgt tcagcccacc cgctgctttc      4440
     tacattctgg attggattac gctggaccag ttaccatcaa gacatcagca ggtcggacac      4500
     cgaagtttgg caaagcttgg tttgccatct ttgtttgtct gtccaccaaa gcaattcatm      4560
     tcgagctcgt cagtgatttg acgacccctg catttatcgc cgctttcaaa cgtttttggt      4620
     ctcgacgtgg ccctatatcc gacttgtact cggacaatgg cacaacattc catggagcca      4680
     gaaaggaact aacggagatg caacggatag ctgtatctca aagtcaagac gaggaaattg      4740
     ctaattttct gacgagtcag gacatcaact ggcacttcat tccgccgtct gccccgcact      4800
     ttggaggtct ttgggaaaca ggcgtacgat ctatcaaact ccaccttcgc cgagtaattg      4860
     gtagcagtgc gttgaccttc gaggaatatt caacaatttt aactcagatt gaagggttac      4920
     tcaactctcg cccactgtgc gcgcccagcg atcacagctt ggatcccctt acccccgctc      4980
     attttcttac aggtcaacct cacatgtcgg tgccggagcc gtccttgtta gacgtcaaca      5040
     ttaacagact gcagcgttgg agacaactgc aagccaaggt tcaaggattc tggaaacgtt      5100
     ggaatctgga ataccttact tccttgcaac ctcgcacgaa atggcagcag gagtccaacg      5160
     acataaccgt ggacactctt gtggtactga aggagccaaa tcaaccgcct agcaagtggc      5220
     tgcttgggcg aatcaccgaa gttcatcctg gccaagacga gagggttcga gtggtcaccg      5280
     tcaaaaccgc ccgaggagtg tacaagaggc ctattaccaa acttgctgtg cttcccttgt      5340
     tctgaacagt cgttcagggg ggccggta                                         5368
//
ID   BEL-2_DPer-LTR repbase;    DNA;    INV; 564 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DPer_;
KW   BEL-2_DPer-LTR; BEL-2_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-564
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1470-1470 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 564 BP; 151 A; 144 C; 108 G; 161 T; 0 other;
     tggtgagaaa tgagcctcgt agtttttaat tcaatgttca tgtatattgc gattgaccta        60
     tttacacgct catgattgta gtacaccgcc taagtaacta tttttacgcg catagctgtg       120
     ttgttgtttt gctcgtgtcc agaacatagc tgtaatgttc tcacacgcat ggccagaccc       180
     gcagctgcac acgcacacag cgatgcgttc cgttgttttg cattgagacc gtcgcgtcga       240
     gtcgtatcgc gtgatcttcc aattcccttt tgctcgactt cttttcgcgg agttgagtca       300
     gtagaaactt ctagacgaag ccgcccgcac gcttactttg taccgcagta gaaacttcta       360
     gacgaagccg cccgcacgct tactttgtac cgcagtagaa acttcagacg aagccgcccg       420
     cacgcatact ttgtaccgcc gcagaatcga accccccgct gttcttgtaa tataattgta       480
     ctataaccac caatattaaa taatcaataa ataataaata agctcaagat ataaacgatt       540
     atacagtcca ctaattcata acca                                              564
//
ID   BEL-2_DRh-I repbase;    DNA;    INV; 5266 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DRh_;
KW   BEL-2_DRh-LTR; BEL-2_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5266
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1549-1549 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4298-4882] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..1643
FT                 /product="BEL-2_DRh-I_2p"
FT                 /translation="MGDHNINFPSQLNKRKSRLPELHLPRFSGSYEDWPDF
FT                 IAMYNSVVGNNEDLSNVEKFQHLRACLDGAALSTIKSLEPADANYDKALEL
FT                 LTKRFDNKLLHFQGHVRAIFGLANVEKGSSEALRGLSDKINSHLRALSTMS
FT                 TIPQLADGLLIHIISRKLDHSTQERWEEALPSDKLPSWTDMSTFLERRCRM
FT                 LENLNSATVPTPSLQVSRSSHRSNRSSFIATNIRNQQLCTFCDSKDHYIVK
FT                 CLQFINLSPSLRHKEAKRLNLCLNCLRKGHGLQQCRSGHCRHCQQKHHSLL
FT                 HLAPIAAQSPVSCAPGSQLAIASQPSIPDLSTPLASTLVATYPEDNSRNVV
FT                 NKSSEYVLLPTAIVYAKGHSGVYIPCRALLDSGSQLNFITTRLANQLQIKV
FT                 HHAAVSISGIGESTIASNLSTDIVAQSLTRDSPHPSQQS"
FT   CDS           1814..5266
FT                 /product="BEL-2_DRh-I_1p"
FT                 /translation="MADNLPILQKTKLGWVASGGHHLVRNSYSSLAAFRKV
FT                 PKFEDDSLSEIVKRFWEIDNSCGESPTTSAEDEICEQQFLQCYSRLESGQY
FT                 SVRLPTKFSTDTLGDSFQRALRRFKALEVKLAKNLQTKLKYSAFMHEYIEL
FT                 GHMSLASKQHVFPQFYLPHHCVEKPDSSTTKLRVVFDGSAKSTSGVSLNDL
FT                 LHTGPSIQPKLFNILIKFRLLRVAMCGDICKMYRCVRVTHPDQFLQCILWR
FT                 DHPDEEIRTYTLDTVTYGTKPAAFLAIRAMQQLALDEERNFPLAAKIVRQD
FT                 FYVDDLISGGDSVEEAVQIRLQVKELLAKGNFPIRKWCSNEAAALEGESDS
FT                 DCEKLMEFKDGTNIAKTLGLAWDPSTDCLLFNLAHNLPDKPITKRSILSMI
FT                 AKVYDPLGLISPVVTKLKIFLQALWKERLDWDECLPQAMHCEWNLLISQLS
FT                 SVCLTFPRFILTPLATIELHGFCDASMAAYGACVYVQSELQGVYSSYLLCS
FT                 KSRVSPLKTLTIPKLELSAALLLSDLMTNIAKEFKFVRKYHCWSDSTIALA
FT                 WIREAPSNFNIFVSNRVAQIQRRTKGMIWHHVPSQLNPADILSRGCKPLEL
FT                 LESPLWKNGPSFLQAGSAGWPQTAYHPSDLPERRSKTLILTQRLDLAASCK
FT                 FSNSFTKLQRIFAYVNKFIKRTASYSASPKALLNPDDLKGGTHLLLKSIHI
FT                 VHFGEEYKALSLRNPLPPSSKLRSLCPFLDDEGLLRVGGRTQNSNLEFEAR
FT                 HPILLPKHHPVTDAIITHYHTTFLHAGPQFLLATVRQRYWPIGGLKAVSSI
FT                 INKCIRCFRMRPKLLDQVMAPLPAERVQPSPTFYVTGIDFCGPFYTKSEIR
FT                 NRAPEKCYVSIFICFATKAVHLELVEDLSTSSFLAALKRFISLRGKPHSIW
FT                 TDNGTNFLGARNELKELRELFLSDPQRSEIFNSCTALGVNWHFIPPRSPHF
FT                 GGLWEAAVKSAKYHFYRVVGNSTLSFNELRTLICQISAMLNSRPLYSISED
FT                 PNDLEILTPGHFIWGKANATIDEPDLTHLNAGHLSRWQKVCQMQQAFWRKW
FT                 STSYLSQLQERGKWKTTRQNLQPGTMVLIKEDNAPPLKWPLGRVDSVVTGG
FT                 DGISRVVVIRTAKGLVRRAIARIAVLPIETKSVESHHLPTGGA"
XX
SQ   Sequence 5266 BP; 1464 A; 1363 C; 1126 G; 1313 T; 0 other;
     ttggtgaccc cgacgtgata ctatctgggt tttagtgcaa atcgcaactt cagttctaac        60
     cttttgctgt ctggccaaac gccgtcaggc acattcctca cacacacacg cacatacaat       120
     cgtctccaga aaacggtaat cgcgttttcc tgtgcccaaa tttgactttc gcaatcgtca       180
     agggtaaatt tcttgcatcc gttagtcgtg ctacagtgaa caacatctaa gatggccaaa       240
     gttgctgacg acttgccacc ggcagacagt caagaagtaa agaatcggct gatattgact       300
     tctacaaggc caagtgcgca tcccttcagc gccaactaaa ggcaatgggc gaccacaata       360
     tcaattttcc ctcccaacta aacaagcgca agtctcggct accagaatta cacttgccca       420
     ggttcagcgg cagctacgag gattggccag atttcattgc catgtacaac agtgtcgtag       480
     ggaacaacga ggatttaagc aatgtagaga aatttcaaca cctgcgcgca tgcttggatg       540
     gcgcggctct aagcacaatc aaatcgttgg aacctgccga tgccaattac gataaggcat       600
     tggagttact tacaaagcgt tttgataaca aattgctaca ttttcagggt catgttcgag       660
     ctatttttgg gctggcaaat gttgaaaaag gatcttcaga agccctgcgc ggtctaagtg       720
     acaaaatcaa ctcacacctt cgggcactta gcaccatgtc aaccattcct caactggccg       780
     atggattact cattcacatt atctcacgca agctcgacca cagcactcag gaaagatggg       840
     aggaggcatt gccatccgac aagcttccca gctggactga tatgtcaacc ttcctggaaa       900
     ggagatgtcg catgctggaa aatcttaaca gcgctacggt tcccacacct agccttcagg       960
     tgagccgaag ctcccataga tcaaatcgaa gctctttcat tgccacaaac atcagaaacc      1020
     aacaactttg taccttttgc gattctaagg atcactatat cgtgaaatgc ctacaattca      1080
     taaatctgtc cccaagctta cgtcacaagg aagccaaacg tttaaatctg tgcctaaatt      1140
     gtctccggaa aggtcatggc ttgcagcaat gtcgctcagg gcattgcagg cactgtcagc      1200
     aaaagcacca ttctttactg catttggccc ccatagcggc tcaatcacca gtctcatgtg      1260
     cacctggctc gcagcttgca attgcatccc agccaagtat accagattta tcaacgccct      1320
     tagcttccac tctcgtagcc acttaccctg aagacaactc taggaacgtg gtcaacaagt      1380
     cctccgagta cgtattgctc cctactgcaa tcgtttatgc aaaaggccat tcaggcgtgt      1440
     atataccatg ccgtgccttg ttggattctg gatcccaact caactttatc accacgcgtc      1500
     tggctaacca gctccagatc aaggttcatc atgcagccgt atcgatatca ggaattggcg      1560
     agtcaacgat agcatctaac ttgtcaactg acattgtagc tcagtccttg acaagagatt      1620
     caccacatcc ttcccagcag tcataactcg atcgataaca gattatcaac cgaactttgg      1680
     cctcgacatc tccaactgga gcattcctaa aaatatatca ctcgcagacc ccacgttttt      1740
     caaatctcag agaatagatt tattgcttgg ggccggtcta tttttcgacc taatctgtgt      1800
     aggccaaatt cgaatggcag acaatttacc aattctccaa aagaccaaac taggttgggt      1860
     ggcttcaggt ggacaccatc tcgttcgcaa cagctattca tctctggcgg cctttcgtaa      1920
     agtccctaag tttgaggatg attccttatc agagatcgta aaaagattct gggaaatcga      1980
     caattcgtgc ggcgaatctc caacaacatc cgctgaagac gaaatatgcg aacagcagtt      2040
     tctacagtgc tactctagac ttgagtcggg tcagtactcc gtaaggttgc cgactaaatt      2100
     cagcactgac acgttaggag attcctttca acgcgcactt agacgcttca aggcgctcga      2160
     agtcaaactg gcaaaaaacc ttcaaactaa actgaagtac tctgctttca tgcacgaata      2220
     catcgagctg ggccatatgt cactggcttc caagcagcat gttttcccac aattctattt      2280
     gccgcatcat tgcgttgaaa aaccggatag ctctacgaca aaattgcgtg tggtttttga      2340
     cggatcagcc aaatctacgt caggagtatc tctaaatgat ctgctacata cgggcccgtc      2400
     gatacaaccc aaacttttta acattctcat caaatttcgt cttctcagag ttgctatgtg      2460
     cggcgatatt tgcaagatgt atcgctgtgt gcgagtaact cacccagatc aatttcttca      2520
     gtgcatccta tggcgcgatc atcccgatga agaaataagg acatacacgt tggataccgt      2580
     aacgtacgga accaagcccg ctgcctttct agcaattcga gcaatgcagc agctggctct      2640
     cgacgaagaa agaaacttcc cactagctgc gaaaatcgtg cgacaggatt tttatgtaga      2700
     cgacttaatt tcaggaggag attccgtgga ggaggccgtc caaatccgtc tacaagtaaa      2760
     agaactattg gcaaagggta attttccgat tcgaaagtgg tgctcaaacg aggctgccgc      2820
     attagaagga gaaagcgatt cagattgtga aaagcttatg gaatttaagg atggcaccaa      2880
     catcgcaaag actcttggct tagcctggga tcccagcacc gattgcctgc tctttaacct      2940
     cgcacataat ttacccgaca aacccatcac aaaacgaagt atcctatcca tgatagccaa      3000
     ggtttacgac ccactcggat taatctcacc cgtcgttacc aaactcaaaa tatttcttca      3060
     agctctatgg aaggaaaggt tggactggga cgaatgcttg ccgcaagcaa tgcactgcga      3120
     atggaatctg ttaatttctc agctttcaag tgtttgtcta acatttccgc gattcattct      3180
     aacgccactg gccacaattg agctacatgg gttttgcgac gcaagcatgg ctgcttatgg      3240
     cgcttgcgta tacgtccaat ctgagttgca gggtgtatat tcttcatatt tgttatgctc      3300
     gaaatccagg gtctctcctt tgaaaacgct gacaatccca aagctcgaac tctcagcagc      3360
     gcttctttta tccgatctta tgacaaacat cgccaaggaa ttcaaatttg ttcgcaaata      3420
     ccactgctgg agcgattcta caatagcgct tgcttggata cgagaagccc cttctaactt      3480
     caacattttt gtttccaaca gggtagctca aatccagcgg cggacaaagg gaatgatctg      3540
     gcatcatgtg ccgtcacaac tgaacccggc ggatatattg tcaagaggat gcaagccgct      3600
     tgaactttta gaatcaccac tttggaaaaa cggaccttcc tttttacaag ccggcagcgc      3660
     aggatggcca caaaccgcgt atcatccatc tgatctaccc gagaggcgct caaaaacact      3720
     tatattaacg caacggctgg atttggcagc gtcctgcaaa ttcagcaatt ccttcacgaa      3780
     gcttcaacgg atttttgcat acgtaaataa attcatcaag cgcacagcat catattcagc      3840
     gagtccgaag gcactactca atccagatga tctcaaaggc ggaacgcatc ttttgctgaa      3900
     aagcattcac attgtgcatt tcggcgagga gtacaaagcg ctaagtttaa ggaacccgct      3960
     gccccctagt agcaagctgc ggtctttatg cccatttttg gacgacgaag gacttctgcg      4020
     cgtcggaggt cgtactcaga attcaaacct cgagttcgaa gccaggcatc cgattttgct      4080
     gcctaagcat catccagtta ccgatgcaat aatcacgcac taccatacca cattccttca      4140
     tgctggtcct caattccttc ttgcaacagt tcgtcaacga tactggccca ttggagggct      4200
     caaagctgta tcgagcatca tcaataaatg catccgctgc ttccgaatgc ggcccaaact      4260
     tctcgaccaa gtaatggccc ccctgccagc cgagcgcgtc cagccaagcc caacatttta      4320
     tgtaactggc attgactttt gcggtccatt ttacacaaaa tcggaaataa ggaaccgcgc      4380
     gccagaaaaa tgctacgtct caattttcat atgttttgca acgaaggcag ttcatttgga      4440
     attggtggag gacttatcga catcatcatt cctcgcagca ttgaaacgct tcataagcct      4500
     tcgagggaaa ccgcattcaa tatggactga caacggcacg aactttctgg gtgctcggaa      4560
     cgagctgaag gaacttcgcg agctatttct aagtgatcca cagagaagcg agattttcaa      4620
     cagctgtaca gcgttgggag tcaattggca tttcattcct ccacgttccc cacatttcgg      4680
     tggattatgg gaggccgcag taaaatcagc aaagtaccat ttttaccgcg tcgttggaaa      4740
     ctcaactctt tcattcaacg agcttcgaac cctcatctgt caaatctcag caatgctcaa      4800
     ctcaagacct ctttattcta tttcagaaga tcctaacgat ttggagattc ttacacctgg      4860
     ccattttatc tggggcaagg cgaacgcaac gatcgacgag cctgacttga cccacctaaa      4920
     cgcaggtcac ctcagtcggt ggcaaaaggt gtgccaaatg cagcaagcgt tctggaggaa      4980
     gtggagcaca tcctacttgt cccagcttca agagcgtggg aagtggaaga cgactcggca      5040
     aaatctccaa cctggaacca tggtcctgat aaaggaggac aatgcaccgc cactcaagtg      5100
     gccccttggt agagtggaca gcgtcgtcac aggaggggac ggcatttcaa gagttgtcgt      5160
     catccgcacc gcaaagggac tggtcaggag agccatagct cggatcgccg ttctgccaat      5220
     cgaaaccaaa tcggttgaaa gccatcatct tccaacgggg ggagca                     5266
//
ID   BEL-2_DRh-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DRh_;
KW   BEL-2_DRh-I; BEL-2_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-279
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1550-1550 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 279 BP; 99 A; 60 C; 38 G; 82 T; 0 other;
     tgttcgcagc agaacgccta aatttaattg tttattatca atttctaaat gtaacgtagt        60
     ttgctaacag catctgcgtt gcgctaacag caccatgtta atttaacact acgaatgtaa       120
     aacctaaaaa acaaacactg tacaacacct actattctct tctctcgttc ttgcctaaaa       180
     cttaaaagta cacgatctta aaacgaaagc taggcctttt ttattttaaa ttaatagaaa       240
     cggccgaagt gggatgcaaa acagcatctc ctcaaaaca                              279
//
ID   BEL-2_DSe-I repbase;    DNA;    INV; 5624 BP.
XX
AC   AAKO01003861;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DSe_;
KW   BEL-2_DSe-LTR; BEL-2_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5624
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAKO01003861; Positions   19584   13961.
XX
CC   Positions [4653-5243] - Integrase core
CC   'GTTGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..2186
FT                 /product="BEL-2_DSe-I_1p"
FT                 /translation="MPALRRSPRLDQSKEPTTSVASDIQQPQSSKESGLLG
FT                 QNSSGTPQPAIAGQTTNSTTVEVANLLERIATLERELYKAKAKEGQAETAR
FT                 NPVGIGLSGNGNGNGAANTQLSMSETSSAMSEATTQMLSENLQREQFVTPS
FT                 LNEPLLAQLSANLQPQLSGTSGQQVTRNNNCTTVSLSPPCYVTATVQPELG
FT                 YVDALREPQRNLVVTAPGSYGTSPASIPNVWTPRRLPDLPEFEGQPEEWPI
FT                 FQCAFTETTEAYQCTALENNQRLVKALKGEARAAVKALLIHPNNVQEVMEQ
FT                 LRFRYGRPEQLIRSQLESVRDVLPISEPNIARIVPFATKVSNLAAFLKSTK
FT                 NGIQHLGNPTLMEELIAKLPISKRLDWAKHAATIEPYPTVVHFSEWLHELA
FT                 RLICIVTDAASKDPKRRLLHASTSRLDGKDTNSHKCCPICEEQHGIKDCEE
FT                 FHHALPTARIELARKHRICFACLESGHMARFCKKGTKCSVNGCQRRHNYLL
FT                 HDRIGNSRLPQSNGGRLKEHTSTRDQELQRDTSHRRRNPFTSTTATLKAGQ
FT                 ADDGQESPHRNLSCVDPDGDHLLFRILPVTLYGRNKQVDTYALLDEGSSVT
FT                 LIDDEIIQSLNLKGESRQLNVQWFGGKSAREHTTVVSLQISGTGKSMRHDL
FT                 RNVFAVSNLNLPMQSLRREDVKARKENARLLRCNAKDLDRLRSRSFGYSTE
FT                 DQKLWSRRTICSRH"
FT   CDS           join(2622..4313,4317..5624)
FT                 /product="BEL-2_DSe-I_2p"
FT                 /translation="MVPSAFRGREPKQAGKNPSSLRCRSQSISLNSALMKG
FT                 PQRYKSLPAVLFHFREGAVGVCADIKEMFHQVLIQPQDRCAQRFLWRNGED
FT                 RRNPDTYEMQVMTFGAACSPCAADYVKLVNASQYSSTDPRAVLAIKEYHYV
FT                 DDYVDSFVSKDDAVAVSSRVREIHANAGFDLCRFSSSSADVVKALNPQGSN
FT                 TNVKWSESEEKILGMYWQPATDNFKFSIKYHRVPSSVMDGKRVPTKREFLS
FT                 LVMSTFDPIGFLSCYMITAKLLMREIWRRRVKWDEPLPDELAAAFERWRQE
FT                 MKYIEEFRCPRYYFGAGCVRTLQLHVFVDSSQSAFAAAAYWRATYANDDVQ
FT                 AHFVCSKTKCAPMRTMSIPRLELQAAVLGIRLMDTVKQEHGVAISSCTLYT
FT                 DSKTVLYWITSTHRRYKQFVGNRVAEILESTEVSQWRWLPSAENVADDATR
FT                 SQRRVDFSQGSRWLSGPPFLTGPEESWPKFSVTDGRAPQAAEEEEMSGEFV
FT                 LAMVNAPLLSWQRFSRFNRLVRTTAWILRLIRRCRGQRYEREEHGLTSVEL
FT                 ADAEHALVRLAQREAFGEAQTGTVSKSSQLSGLSPYLDREGIMRANGRIDA
FT                 AACVPYGARRPIILSHKSALAEMIVRHNHETKCHQNVEATIGEIRQKFWIT
FT                 NVRRLLRKVVANCNVCKLRKARPTQPKMGPLPEDRLEANGWPFKFTGLDYF
FT                 GPLLVSIGRRTEKRWVALFTCLTTRAVHLEMAHDLSTDSCIIAMRNFMCRR
FT                 GPVFRIRSDNGKNFVGADKEARRFTDVFDPVKIQGELSSKGIEWIFNCPSN
FT                 PAEGGVWERMVQCVKKVLAHTMKELAPKEHVLENLLIEAENIVNSRPLTHL
FT                 PITVEQEAPLTPNDLLEGMSDVPNLPGDDELASERCTTRKQWRIARMMRDR
FT                 FWKRWVHEYLPTLVRREKWCQRVEPMRRGDLVYICDPAIPRREWKRGVVEE
FT                 VFTGKDGVPRRASVRTSDRAKLVLRPTSKLAVLDVVNAVASRGRG"
XX
SQ   Sequence 5624 BP; 1547 A; 1312 C; 1601 G; 1164 T; 0 other;
     tttcttttat tcgcactctt tattcgcacc ctgtgatttg caacatgccg gcgctgaggc        60
     gaagccccag actagatcag tccaaagagc ccacgacgag tgtggctagt gatatacagc       120
     agcctcaaag ttccaaggaa agtggattac tcggtcagaa ttcgagtggt actccgcagc       180
     ctgccatagc agggcagact acaaattcca caactgtaga ggtggcgaac ctattggaaa       240
     gaatcgcaac cttagaaagg gaactataca aggccaaggc aaaggaaggg caagcagaga       300
     ccgcaagaaa tcccgttgga atcgggttga gcggtaacgg taacggtaac ggtgcggcga       360
     atacacagct aagtatgagt gaaacgtcgt cagctatgag tgaagcgacg acgcagatgt       420
     tgagtgaaaa tttgcaacgg gaacaatttg tgacgccatc tttgaatgaa ccgttgctcg       480
     cacaattgag tgcaaatttg cagccacaat tgagtggaac tagtgggcaa caagtcacac       540
     ggaataataa ctgtacaaca gtgagcctat ctccgccttg ctacgttacg gccacggtgc       600
     agccagaact agggtatgtt gatgcactac gggagccaca acgcaactta gtggttactg       660
     cgcctgggtc ctacgggaca tcaccggcaa gtataccaaa tgtatggacg ccacgcagat       720
     taccggatct tccagagttc gaaggccagc ccgaggaatg gccaatattc cagtgcgcgt       780
     ttacggagac gacggaggca tatcaatgta cagccttgga gaacaatcaa aggctagtga       840
     aggctttgaa gggtgaggca cgagcggcag taaaggcgct gctcatccac cccaacaatg       900
     tgcaagaagt tatggagcag cttcgatttc gatatggacg cccggagcaa ctgattcgaa       960
     gtcaactgga gagcgtgcga gatgtgctgc caatatcaga accgaacata gccagaattg      1020
     tgccgtttgc cacaaaggtg agcaacctcg ctgcgttttt gaagtcaaca aagaacggca      1080
     ttcagcattt aggaaatcct accctaatgg aggagctgat agctaagttg cctataagca      1140
     agaggttgga ctgggcgaag catgcagcta cgatagaacc atatccaaca gtggtgcatt      1200
     ttagcgaatg gctacacgag ctcgctagat tgatatgcat tgtgacggat gctgcaagta      1260
     aagatccgaa gcgaaggcta ttgcacgcaa gcacaagtcg tctggatgga aaggatacta      1320
     actctcacaa atgttgtcca atatgtgagg agcagcatgg gatcaaggac tgcgaggaat      1380
     ttcatcatgc acttccgaca gcgagaatcg agttagcaag gaagcatagg atctgcttcg      1440
     cgtgcttgga gagtggacac atggcccggt tctgcaagaa gggcaccaaa tgcagtgtca      1500
     acgggtgcca aagaaggcat aactacctgc tccacgatag aatcgggaat tccaggctac      1560
     cccagtcgaa cggcggccgc ttgaaggagc atacgagcac tcgagatcag gagctgcaaa      1620
     gggacaccag ccatcgccga cgtaatccct ttacgtcaac gactgcaacg ctaaaagcag      1680
     gacaagccga tgatggccag gaatcgccac accgaaacct tagctgcgtt gacccggatg      1740
     gagatcacct gctattccgg attttgcccg tgacgttgta tgggaggaat aagcaagtgg      1800
     acacatacgc gctgctcgat gagggatcgt ccgtaacgct tattgacgac gaaattatcc      1860
     agagcctgaa cctaaaggga gagagtcgac agctcaacgt gcagtggttt ggtggcaaat      1920
     ccgccagaga gcacactacg gtagttagcc tgcagataag tggcacgggc aaatccatgc      1980
     gccatgacct acgaaatgtg ttcgctgtat cgaatctaaa tcttccgatg caaagcttgc      2040
     gtcgggagga tgttaaggca agaaaggaaa atgcacgcct acttcgatgc aacgccaagg      2100
     atcttgatcg gcttagatca cgctcatttg ggtattccac tgaggaccag aagctttgga      2160
     gcaggaggac catttgcagc cgccactaaa cttggatggg tggtgtacgg accggtaaaa      2220
     gggagtgcaa gtccaccggt atcgagatca tgccttttag ccgtgtcaca cgataatctt      2280
     ctagagaaga tggtcagcga ttacttcgaa actgagaatt ttggagtaaa gcccgcaccg      2340
     ccggtcgcag ctggtgacga tgtgcgagcc ttaagcattt tggaggacac gacgaaacgt      2400
     gtaggccgac gataccagac tggtctgcta tggaaagtcg acgaggtgag actgccagac      2460
     agctacaaca tggcactcaa gagactcgtc agcattgaac ggaaaatgaa gcgcgacgag      2520
     gttttcgcgc gggcatacaa gggaattatg gatgattaca tcaagaaggg atatgcacga      2580
     cgactagagc cgcaggggat aacccacacc aacggcaagg tatggtacct tccgcatttc      2640
     gcggtcgaga acccaaacaa gccgggaaaa atccgtctag tcttcgatgc cgcagccaaa      2700
     gtatatcact gaactcggcg ctgatgaaag gccctcagcg ctacaaatcc ttaccagcag      2760
     tgctcttcca cttccgggaa ggagcagttg gagtatgtgc ggacattaag gagatgtttc      2820
     accaagtact gatacagcca caggacagat gtgcccagcg attcttgtgg agaaatggag      2880
     aggatcgtcg gaacccggac acctacgaga tgcaggtcat gacattcgga gcagcttgct      2940
     ctccttgtgc agcggactat gtgaagctcg tcaacgcttc gcaatatagt agtacggatc      3000
     cgcgagcggt tctggcgata aaggagtacc actatgtgga cgactatgtg gacagtttcg      3060
     tgagcaagga cgatgctgtc gccgtttcgt cacgggtgag agaaatacac gcaaacgcag      3120
     gatttgattt gtgtcggttt tcctccagtt cggcagatgt ggtcaaagct ctgaacccac      3180
     aaggatccaa cacgaatgtt aaatggagcg aatctgagga gaaaatattg ggaatgtatt      3240
     ggcagccggc tacggataac ttcaagttca gcatcaaata ccatcgggta cccagcagtg      3300
     tgatggacgg gaaacgcgtc cctaccaaga gggagtttct aagccttgtt atgtccacat      3360
     tcgatccgat cgggttcttg agctgctaca tgataaccgc taaactgttg atgcgagaga      3420
     tttggcggag gagagtcaag tgggatgagc cactcccaga cgaattggcc gcagcatttg      3480
     agcgctggcg gcaagaaatg aaatacattg aagaattccg atgtccacgc tactacttcg      3540
     gcgctggatg tgtacggaca ctgcagctgc acgtcttcgt ggactccagc caatctgcgt      3600
     tcgccgcggc ggcttattgg cgggccacat acgcaaacga cgatgtgcag gcacattttg      3660
     tgtgttccaa aacgaaatgt gctcccatga ggacgatgtc gatcccacga ctggaacttc      3720
     aagcagctgt attaggaatt agactgatgg acaccgttaa acaggaacac ggtgtagcga      3780
     tcagcagctg cacactatat accgactcta agaccgtgct gtactggatc accagcactc      3840
     accggagata taagcaattt gttggaaatc gggtggcaga aatcttagaa tccacagagg      3900
     tttcccaatg gagatggcta ccatctgccg aaaacgtggc agacgacgcg accaggtcgc      3960
     aacgccgcgt ggacttcagc caaggttcgc ggtggttaag cggaccacca ttcctaacgg      4020
     gacctgaaga aagttggccc aaattttctg taaccgatgg acgcgctcca caggccgctg      4080
     aggaagaaga gatgtcaggt gagtttgtat tggccatggt aaacgcgccc cttctatctt      4140
     ggcagaggtt ctcgagattc aaccgactgg taagaacgac agcatggatc ctaagactta      4200
     ttcgacgctg tcgcgggcaa cgctacgagc gagaagagca cgggcttacc tctgtcgaac      4260
     ttgctgacgc ggagcacgca ttggtccggc tggcgcagag agaagcgttc ggctaggaag      4320
     ctcaaacagg aacggtcagc aagagcagcc aattatcagg actttcgccg tatttggata      4380
     gagagggtat catgcgtgcc aatggaagga ttgacgcagc ggcatgcgta ccatatgggg      4440
     ctcgccgtcc gatcatactg tcccataaaa gtgcactggc ggaaatgatc gttcgtcaca      4500
     accatgagac gaagtgccac caaaacgtgg aggccaccat cggcgagatt cgccaaaagt      4560
     tttggataac taacgtgagg aggcttctaa ggaaggtggt ggctaactgt aacgtatgca      4620
     agttgcggaa ggcacgaccg acacaaccga aaatgggccc attgccagag gatcggcttg      4680
     aggcaaatgg atggccattt aagttcactg gcctggacta tttcggacca ttgcttgtgt      4740
     cgattgggcg ccgaacagag aagaggtggg tggcgctatt cacctgctta actacgagag      4800
     ccgtccactt ggagatggct catgatttgt caacagattc atgcatcatc gctatgagaa      4860
     acttcatgtg ccgccgtgga cctgtgttta ggataaggag cgataatggc aagaacttcg      4920
     tgggagccga taaagaggcc agacgattca ccgatgtatt tgacccagtg aagatacagg      4980
     gcgagttgtc atctaaagga atcgaatgga tcttcaactg cccatcaaac ccagctgagg      5040
     gaggtgtctg ggaaaggatg gtccagtgcg tgaagaaagt tttggcgcat acgatgaagg      5100
     aacttgcacc caaggagcac gtgctggaga acttgctgat cgaggcggag aacatagtga      5160
     attcccgccc gctcacgcac ttgccgatca cagtggagca ggaggctcca ctgacaccga      5220
     acgacctgtt ggaaggaatg tccgacgtgc caaatcttcc tggagatgat gaattggcat      5280
     ctgagagatg cacaacaagg aagcagtggc gtatcgctcg gatgatgaga gatcggttct      5340
     ggaaacgatg ggtgcacgag tacttgccca cacttgttcg cagagagaaa tggtgccagc      5400
     gtgttgagcc catgcgtcga ggagacctgg tatacatctg cgatccggcc ataccacgca      5460
     gggagtggaa aagaggcgtc gttgaagagg tattcaccgg gaaagatgga gtgccacggc      5520
     gggcttcggt gaggactagc gaccgagcca aattagtgct gcgtcccact tcgaagttag      5580
     ccgttctgga tgtggtgaat gctgttgctt cacgggggag ggga                       5624
//
ID   BEL-2_DSe-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   AAKO01003861;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DSe_;
KW   BEL-2_DSe-I; BEL-2_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-344
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAKO01003861; Positions   13960   13617.
XX
SQ   Sequence 344 BP; 104 A; 55 C; 74 G; 111 T; 0 other;
     tgtcgcggaa cggataagtt ggctatcgat aagtagttca gttatttgtc aacggttaag        60
     ggcactcgtt cacattaaat actaaatgta tgcattttta tagttattgt aattggtcac       120
     atcgatttac ttaaaattaa gctactttgc gcgccagatc agttcgtctg acgataccaa       180
     tagtgaggga agagaaactg cggtacgtaa gattcagaat agatataagt tgaaatttgt       240
     aatgccttta aactgtataa tttccctata gaataaaacg atcttcattt gtgtaagcca       300
     atgagcgttt aaggcatttc ctgggtattg tcggcggctc gaca                        344
//
ID   BEL-2_DSer-I repbase;    DNA;    INV; 5874 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5874
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1999-1999 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..5871
FT                 /product="BEL-2_DSer-I_1p"
FT                 /note="Speriolin N-terminus, DUF1759, retropepsin,
FT                 reverse transcriptase and ribonuclease H, and
FT                 integrase."
FT                 /translation="MPTTHSPRRSPRLNQPEVTAATTTSAASGTPAGLAYA
FT                 DGGPQRPRTPEEGIGVKRTTGPAQTEALEQDVDPTTSQIAKLMERVANLEK
FT                 ELQQARANEGLAAPARNPVRNGSSGVGVSGAANTPLGEAPCLSAMVRQQLS
FT                 ENLPTGPLASVTPSYDEQLPAQLSANLPPQLSGSLPPYLSGNAAIGQRVTR
FT                 TDCTTVSYSPPCCVTATVQPERGYVHAPREPQRRFTVPTPSPGSYGTAGVA
FT                 NEWTPRRLPDLPEFEGQPEEWPIFQCAFLETTAAYQCTALENNQRLVKALK
FT                 GEARTAVKSLLIHPNNVQAVMEQLRFRYGRPEQLIRSQLESVRELQPIQEH
FT                 NIGRIVSFATRVSNLAAFLQSTDSGDQHIGNPTLMEELIAKLPLSKRLDWA
FT                 RYAVAMERYPTIVHLSEWLNELAKLVCTITDVSSKTPKRRVLHANTNLELP
FT                 MHGEHQEDMEQKGYNDHPRGCLMCGGQHAIKDCKEFNNAPVRTRLEFAKKR
FT                 RICFACLETGHMVRFCKRSRKCNVYGCQRKHHYLLHDEADSPRRSQQSDCG
FT                 HRRELRSNHRREPXEVISQRKRMPQSADPTVSNISMAQATSLRSAGRMENE
FT                 NQSGQETPHRNLSCVDSDGGHLLFRVLPVTLYGEKQQVDTYALLDEGSSVT
FT                 LIDDELVRSLHLKGESRQLNVQWFGGKSAREPTKRVSLQISGAGKPKRHGL
FT                 RNVYAVSNLSLPMQSLRREDVKTARASARLPVKPYNNAAPRILIGLDHAHL
FT                 GIPLQTRSFGAGGPYAAATKLGWVVYGPVRRQASPLTERSCLLAVTQDDAL
FT                 EKMVSDYFEIENFGVKPAPPVAASDDERALGILERTTKRIGQRYQTGLLWK
FT                 DDETRLPDSYNMALRRLVNIERKMKRDANFAQAYNAIMDDYVKKGYARRLE
FT                 QQEVTYGNRDKLWYLPHFGVENPNKPGKIRLVFDAAAKVNGVSLNSALLKG
FT                 PQNYKSLPAVLFHFREGAVGVCADIKEMFHQVLMQPQDRCAQRFLWRHGDD
FT                 RKDPEIYEMTVMTFGAACSPCSAQHVKTVNASRHVHTDPRAVLAINEYHYV
FT                 DDYVDSFADEDEAIAVSKRVREIHASAGFDLCRFSSSSARLVRALNPLGTN
FT                 ENVEWTESEQKVLGMYWHPATDDFRFSVKYHRVPSSVMTGERVPTKREFLS
FT                 LVMSTFDPIGFLSCYMVTAKLLMREIWRKGVTWDEPLPDELATAFESWRQE
FT                 MSYVKEFRCPRYYFGTGRVRALQLHVFVDSSQSAFAATAYWRATYANDDVR
FT                 VHFVCAKTKCAPMRTMSVPRLELQAAVLGTRLMNTVKXEHSVEISRYVLWT
FT                 DSKTVLHWISSTHRRYKQFVGNRVAEILETTEVSQWRWVPTAENVADDATR
FT                 PRRHVDLSQGSRWLRGPTFLREPEENWPESSSSGSGCTRATDEEEMPCEFA
FT                 LVTANGFFISFQRFSNYNRLVRTTAWVLRFVRRCRGQYSDREKYGLTANEC
FT                 ANAERILIRQAQSEAFSGEERDKAGRISKEGSQLRGLSPYFDDDGVMRVRG
FT                 RIDAAACVPYSARRPIILSHRHTLTVMVVHHYHQKMGHQNHDATIGEIRKK
FT                 FWITNLRRLLRKVVADCQICKLRRAQPMQPIMGPLPEDRLEANGWPFKHTG
FT                 LDYFGPLHVTIGRRIEKRWVALFTCLTTRAIHLEMAHDLSTDSCIIAMRNF
FT                 MSRRGPVVKMRSDNGKNFVGANREARRFNEVFEPEKIQGELSSKGIEWIFN
FT                 CPANPAEGGAWERMVQCVKKVLAHTMRELAPMEHVLENLLIEAENIVNSRP
FT                 LTHLPVTVDQEAPLTPNDLLRGVPNLPDLPGDNGQPLERCATKKQWRLARM
FT                 MRDRFWKRWVHEYLPTLVRREKWCSHVEPLRRGDLVFICDPAIPRREWKRG
FT                 IVEEVFTGVDGVPRRAAVRTDDRARMIRPASKLAVLDVVNAAASRGR"
XX
SQ   Sequence 5874 BP; 1542 A; 1458 C; 1773 G; 1099 T; 2 other;
     tttcttttat tcgcattctt ttattcgcat tctttgagtc gcatctcaat tcgcattaga        60
     gtcggaactc taacggcatt tggaaaacac gtacggagct aaacgcgtga tatgccgacg       120
     acacattcgc ccagacggag ccccagactt aatcaacctg aggttaccgc agctacgacc       180
     acatctgcag catccggcac accggccggc ttggcgtatg cagacggtgg cccacagcgg       240
     ccacggactc cagaggaagg aatcggggta aaacgcacca ctggacctgc ccagacggaa       300
     gcgctggagc aggatgtgga ccccacgact tcacagattg cgaaacttat ggaaagggtc       360
     gcaaatctag agaaggagct ccaacaggca agggcaaatg aaggacttgc ggcgcccgcc       420
     aggaatcccg ttaggaacgg gtcgagtggc gtcggagtga gcggtgcggc gaatacaccg       480
     ctaggagagg cgccatgttt gagcgcaatg gtaaggcagc aattgagtga aaatctgcca       540
     acgggaccac tagcgtcagt gacgccatct tatgatgaac agttgccggc acaattgagt       600
     gcaaatctgc cgccacaatt gagtggaagt ttgccgccat atttgagtgg taatgcggca       660
     atagggcaac gagtcacacg gacagactgt acaactgtaa gctactcacc gccatgttgc       720
     gtgacggcca cggtgcagcc agaacgaggt tatgttcacg caccacggga gccacaacgc       780
     agattcactg tacccacgcc atcacccgga tcctatggaa cagcgggtgt ggccaatgaa       840
     tggacgccac gcagattgcc tgatcttcca gagttcgaag gtcagccaga ggaatggcca       900
     atattccagt gcgcgttctt ggagacgacg gcggcgtatc agtgtacagc attggaaaat       960
     aaccaaaggc tagtgaaggc attgaagggt gaagcgagga cggcagtcaa gtcactgctt      1020
     attcatccta acaacgtaca ggccgtaatg gaacagcttc gctttcgcta tgggcgtccg      1080
     gagcaattga tccggagcca actggagagc gtgcgggagc tacagccaat tcaggagcac      1140
     aacataggca ggattgtatc gttcgccacg agggtgagca atcttgcagc gtttctgcag      1200
     tcaaccgaca gcggcgacca gcatatagga aatcccaccc tgatggagga gctgatcgcc      1260
     aagttgcccc taagtaagag gttggactgg gccagatacg cggtcgctat ggaacgatac      1320
     ccgacgatag tgcacctaag tgaatggcta aacgagctcg ctaagctggt atgcaccatt      1380
     acggacgtga gcagtaaaac cccaaagcga agggtgttac atgcaaacac gaatctggag      1440
     cttccgatgc atggtgagca tcaggaagac atggaacaga aggggtataa tgaccacccc      1500
     agaggttgcc tcatgtgtgg agggcaacac gcaatcaagg attgcaagga attcaacaac      1560
     gcccctgtca ggacgcgatt ggagttcgcc aagaagcggc ggatctgttt cgcgtgcctt      1620
     gaaaccgggc acatggtacg gttctgcaag aggagccgta agtgcaacgt ctacggatgc      1680
     cagaggaagc atcactactt gctgcatgac gaagccgata gccccagacg gtcacagcag      1740
     tcagactgtg gccacaggag ggagctacgg agcaaccaca gacgggagcc acamgaggtc      1800
     atcagccaac gcaagcggat gccgcagtca gcggatccaa cagtgagtaa catttccatg      1860
     gcccaagcaa caagcctgag aagcgctggg cgcatggaaa atgagaatca aagcggccag      1920
     gagacgccgc atcgaaacct tagttgtgtc gattcggatg gaggccacct gctgttccga      1980
     gttctgcccg tgacgctgta cggggagaag caacaggtgg acacgtacgc actgctcgac      2040
     gagggatcgt ctgtgacact catagacgac gagctcgtcc gaagcctaca cctaaagggt      2100
     gagagtcgac aactaaacgt gcagtggttt ggcggtaagt ccgccagaga gcctacgaaa      2160
     agggttagcc tgcagatcag tggagcgggc aaaccgaagc ggcacggttt aaggaacgtg      2220
     tacgcagtaa gcaacctgag tcttccgatg cagagtttac gtcgggaaga tgtcaagacg      2280
     gcaagggcga gcgcacgcct accagtgaag ccgtacaaca atgcagcgcc aaggatcctt      2340
     attggactgg atcacgcgca cctaggaatt cccctgcaga ccagaagctt cggcgcagga      2400
     ggaccatacg cagcagctac caaattagga tgggtagtat atggaccagt gagacgccaa      2460
     gcgagtccac tgacggagag atcgtgccta ctagccgtta cccaggatga cgctctggag      2520
     aagatggtca gcgattattt cgaaatagag aacttcggag tgaagccagc gccaccggtc      2580
     gcagccagcg acgatgaacg ggctctgggc atcttggaga ggacgactaa acggataggt      2640
     caacgatacc agactgggct gctatggaag gatgacgaga cgagactgcc agacagttac      2700
     aacatggcac tacggcgact cgtcaacatc gaacggaaaa tgaagcgcga tgcgaacttc      2760
     gcgcaggcct acaatgcgat catggatgac tacgtcaaga agggatacgc acgacgacta      2820
     gagcagcagg aggtcactta tggtaaccgt gacaagttgt ggtacctgcc gcacttcggg      2880
     gtcgaaaacc caaacaagcc tgggaagatc cgtctagttt tcgatgcagc agccaaagtg      2940
     aacggcgtat ccctgaattc agcactactg aaaggccccc agaactacaa gtcactcccg      3000
     gctgtcctct tccactttag ggaaggagcc gtgggagtct gtgcggacat caaggagatg      3060
     ttccaccagg tattgatgca gccacaagat agatgcgccc agagattctt gtggaggcac      3120
     ggagatgacc gcaaagaccc ggagatctac gagatgacag tgatgacgtt tggagcagct      3180
     tgttcgccat gctcagcgca gcacgtgaag actgtaaatg cttcaaggca cgtgcacact      3240
     gatccccggg cggtcctggc tattaatgag taccactacg tggacgatta cgtagatagc      3300
     ttcgcagacg aggatgaagc tatagccgtc tcaaaacgag taagagagat acacgcaagt      3360
     gccggttttg atttgtgtcg gttttcttcc agctcggcga gattggtcag agccttaaat      3420
     ccgttaggca ccaacgagaa cgtcgagtgg accgaatccg agcagaaggt attgggcatg      3480
     tattggcacc cggctacaga tgacttcaga ttcagcgtca agtaccatcg ggttcccagc      3540
     agcgtgatga cgggggaacg tgtccctacc aagagggagt tcctcagctt ggtgatgtcc      3600
     acgtttgatc cgattgggtt cttgagctgc tacatggtaa ccgccaagct acttatgcga      3660
     gagatttggc ggaaaggagt cacatgggat gagccattgc cagacgagct agccacggca      3720
     tttgagagct ggcggcaaga gatgagctat gtgaaggagt tccgatgtcc acgctactat      3780
     tttggtactg gacgagtacg agcactccag ctgcacgtct tcgtggactc cagccagtcg      3840
     gcgtttgctg cgacggcgta ttggcgggcc acctacgcaa acgacgacgt gcgggtgcat      3900
     ttcgtatgtg ccaaaacgaa atgtgctccg atgaggacaa tgtcagtccc gagattggaa      3960
     ctacaggcag ccgtgctggg aacacggctg atgaacactg tgaaacwgga acacagtgta      4020
     gagataagca gatacgtact ctggacggat tctaagacag tgctgcactg gataagcagc      4080
     acccaccggc ggtataaaca gtttgttgga aaccgggtgg cagaaatcct ggagacgacg      4140
     gaagtatccc aatggagatg ggtaccaact gccgagaacg tggcagatga cgcaaccagg      4200
     ccgcgacgcc atgtggacct cagtcaaggg tcacgatggc tacgcgggcc gacgttcctg      4260
     cgggaaccag aagagaattg gccagagagc tcctctagtg gtagtggctg cacgagagcc      4320
     accgacgagg aagagatgcc atgtgagttt gcgctagtga ctgcaaacgg attttttata      4380
     tctttccaga ggttctcaaa ctacaaccgg ctggtaagga ccacggcttg ggtccttaga      4440
     ttcgtccgac gatgccgcgg ccagtatagc gaccgtgaga agtatggact cacggcaaac      4500
     gaatgcgcca acgcggagcg catattgatc cggcaggcgc aaagtgaagc gttctccgga      4560
     gaagagaggg acaaagctgg aaggatctcg aaagaaggca gccaactgcg agggctgtcc      4620
     ccgtatttcg acgacgatgg agtcatgcgt gtaaggggaa ggatcgacgc cgccgcttgt      4680
     gtgccataca gcgcccggcg ccccattata ctgtcccaca gacacacgct gacggtgatg      4740
     gtagtacacc actaccacca gaagatgggc catcagaacc acgatgcgac cataggcgag      4800
     atacggaaga agttctggat aacgaactta cggaggctgc tacggaaggt ggtggctgac      4860
     tgccagatct gcaagctgcg gagggcacag ccgatgcagc caataatggg tcctttgcct      4920
     gaggaccgac tggaagccaa cggatggcca ttcaagcaca cgggcttgga ttattttgga      4980
     ccgttgcatg tgacgattgg acgtcgcatc gagaagaggt gggtggcact gttcacctgc      5040
     ctaaccacga gggccatcca tttggagatg gcccatgatt tatctacgga ttcctgtatc      5100
     atcgctatga ggaacttcat gagccggcga ggaccggtgg tcaagatgag gagcgataat      5160
     gggaaaaact tcgttggagc caatcgagag gccaggagat tcaacgaggt tttcgagcca      5220
     gagaagatcc agggcgagct gtcgtccaaa ggaatcgagt ggatattcaa ctgcccagcg      5280
     aacccagctg agggtggcgc ctgggaaagg atggtccagt gcgtcaagaa ggtgctggca      5340
     catacgatga gggagctggc tcccatggaa catgttctgg agaacctgtt gatcgaggcg      5400
     gagaacatag taaattcccg cccactaacg catctgccag ttactgtgga ccaggaggct      5460
     ccactgactc ccaacgactt gctgagagga gtacccaatc tgccggatct acccggagac      5520
     aatggacagc cgttggagag gtgcgccacg aagaagcagt ggcgactggc caggatgatg      5580
     agagaccgct tctggaagcg atgggtgcac gagtacctgc ctactcttgt gcgcagggag      5640
     aaatggtgct cacatgtcga gcccctgcgc cgaggagact tagtgttcat ctgcgatccg      5700
     gccataccac gtcgagagtg gaaacgagga atcgtggagg aggtgttcac tggagtagat      5760
     ggagtgccca ggcgagcggc ggtacggact gacgatcgag ccaggatgat tcgtcccgct      5820
     tcgaagctag ctgttctgga tgtggtgaat gcggctgctt cacgggggcg ggga            5874
//
ID   BEL-2_DSer-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-400
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2008-2008 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 400 BP; 109 A; 78 C; 104 G; 109 T; 0 other;
     tgtcgcggaa cggataagct aacccgctag aatatcgata gtcagtcaag tttgaattac        60
     gcgccactaa ggcgaacctt cgttaagtat gtactcggta tttgaactat gtttgtaatt       120
     ggccacactg tttatggccg aaaagctatg ttaagttcgg cgccacggtt attccgatcg       180
     gcgatcccag cagagaaggg aggagatact gcggtatgta aaggggaata ggttgaggtt       240
     aaattctaag tttgtacttc ctcaacagaa taaaacacga ctcataagct cattaccaca       300
     cttcaagtcg gagtgttgga tacgctacag gatctggtat ttcttgtttc ggtggagcaa       360
     aggtgttaga tggcaactcc cgggatttgg atcggcgtca                             400
//
ID   BEL-2_DTa-I repbase;    DNA;    INV; 5370 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.08, Created)
DT   28-AUG-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DTa_;
KW   BEL-2_DTa-LTR; BEL-2_DTa-I.
XX
NM   BEL-2_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5370
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1587-1587 (2012).
XX
RN   [2]
RP   1-5370
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..5367
FT                 /product="BEL-2_DTa-I_1p"
FT                 /translation="MAPTNSCYLCSAPDNEEMLRCIKCSSQYHPTCCGLDN
FT                 CSTTSNWTCACCTEKAAQTFVQQGDPNLTSIQLVQEANKTPTESNQPNQSG
FT                 GELSEDQRQLMLQQLQEELDVEKEFLRRKFALLRSGVTPTGIETQINQRGQ
FT                 ECANSQLTATGIQFAENNGCSTPHQPVEPQLITTRQAAFRQMVPRELPSFS
FT                 GDPKEWPIFFSSFESSTKMACYSNEENMIRLQKALKGKALDAVRDCLLFPD
FT                 TLPDVMRTLRMYFGRPEHILKVVVDNMRRMPAPKGQLEPLIELAFAVKNMC
FT                 ATMKASNMLAHLNNPTLLQEIVEKLGPEMMLNWALYSKQFDCPNLQHLADW
FT                 MFELADAACRVTTPAVGRTAERRSLRQGCLNTHTAVAGSAQQRVEHCMVCD
FT                 GPHCISRCESFAGLPYAAKWDVVRTSHLCKICLKRHNKSCWKKRSCGINNC
FT                 QAIHHPLLHQDQSPVPGALNNHRQPENEGEESYFRIIPVTLRGKSKLIEIY
FT                 AFMDDGSTLTLLEESVANELEEDGIPSPLCISWTGSVQRQEPSSRRLDLRI
FT                 SGTSQNSKVFNISNVHTVASLGMTAETMIAEDVKRKYRHLKGIPIKSYKQV
FT                 VPKMIIGVNNPNLISSLKVREGKWNQPVAAKTRLGWTVYGGSRQRGNRFNF
FT                 HKCECDSDLHEMVKAYITAEDKVSTQRKSTPEESRASEILMERTTYDGNKY
FT                 TAGLLWLDEHRSFPDSFPMAERRLKCLQRKMHNDPELAVELNQQIQNLVDK
FT                 GYAKKLSSEETKKDAAGAWYLPIFTVRNPHKPNRVRLVWDAAAKASKYCLN
FT                 DYLLKGPDLLVPLLRIMYNFRMRAVAISGDIAEMFHRIAVRQEDACAQRFL
FT                 WCNQSGTADVYQLNVLTFGAACSPCIAHYVRDKNALKHAEEFEAAARAITK
FT                 FHYVDDYIDSCDTPQQAITLAREVKEVHSRGGFHMHKWCSNHKEVVADLNG
FT                 STKQEEKEFYNNEEIHSFEKILGMQWSPSQDAFTYALRFVRLNRNIIKENI
FT                 VPTKREVLQVLMSVFDPMGFVSCIMMYLKILLQNIWRTKMGWDDELPPELY
FT                 VQWNLWLSYLPLISQVAIPRRYFENGTPEDCSTQLHIFVDAGEEAYAAVAY
FT                 FRIQFQGIITVRLVSAKSKVAPVRPLSIPRMELQSALTGARLFRDIKAQHD
FT                 IKFTETHLWTDSKTVLAWLNGDPRKYQQFVMFRLAEISELSDVNHWRWVPS
FT                 KHNVADVATKRQSGPEAYDRWFAGPEFLRLPAETWPITESSHSTTEELRPR
FT                 LLHIRQATIRPNYEAFSKWITLSRAVAYWFLYKEQLTSQSRKQSKPTRISV
FT                 FHIRNAQAYIFRCVQIEGFPDEFARVLKSTPVARSSVLWRLQLCMNEDNIM
FT                 QVRNRVGKFKSTSDDLVILPTSHWVTKLIVRHYHEKSYHINHETALNEVRQ
FT                 RFYIPKLRPLFKQVRRDCQQCKLDRAKPQPPIMAPLPPARLGGFQRPFTFV
FT                 GIDYFGPLTVIDGRKSLKRWGMISTCLTMRAIHIEIVNSLSTDSCLMGLRN
FT                 FIARRGLPHEIYSDNGTNFRGADSFLQEVQFIDESKMHHHLAQLGIEWKFN
FT                 PPAAPHMGGAWERMVRSIKTVLYKISPHQKFSDESLRTAMLEIELTVNSRP
FT                 LTFVSLDHDDQEALTPNHFLLGSSNGTKPFCDPERINYRWCLRQSEQFANQ
FT                 FWTRWVTEILPTITRRSKWHEKVKPIDVGDLVIIVDETQRRNTWLKGRVIE
FT                 VTRASDGQVRRAKVQTRDGFLVRPAVKLAVLDVGPIESKLQESSLTGGG"
XX
SQ   Sequence 5370 BP; 1580 A; 1315 C; 1300 G; 1175 T; 0 other;
     tttcttaaaa tttcctactc tgactggacc acgtgggacg ttacataata gcctggcgat        60
     atggcaccaa ctaatagttg ttatttatgt tccgcccccg acaacgagga gatgctaaga       120
     tgcatcaagt gttccagcca atatcaccct acatgctgtg gactggacaa ctgtagtacc       180
     accagcaatt ggacgtgcgc atgttgcacg gagaaggcgg cgcagacctt cgttcaacag       240
     ggcgacccta acctcactag cattcaactc gtacaagagg ccaacaaaac gccaactgaa       300
     agcaaccagc caaaccagag tggcggggag ctatcagagg accagcggca gcttatgtta       360
     cagcagttgc aggaggagtt ggatgtcgaa aaggaatttc ttcgtcgcaa attcgccctg       420
     ttgagatccg gagttacacc aaccggaatc gagacgcaaa taaatcagcg aggccaagaa       480
     tgtgcgaact ctcaacttac cgccaccggt atacagtttg cggaaaacaa cggatgcagt       540
     actccgcacc agccggttga gccccaactc attacaacac ggcaagcagc ctttaggcag       600
     atggtgcccc gagagttgcc ctcctttagt ggcgatccaa aggaatggcc aattttcttc       660
     agttcattcg aaagcagcac aaaaatggcc tgttacagca acgaggaaaa tatgatcagg       720
     ctgcagaagg ctctaaaagg gaaagctttg gatgcagtca gagactgcct tctatttcct       780
     gacacgttgc cagacgtcat gagaacctta aggatgtact tcggtcgccc agagcatatc       840
     ttgaaagtcg tggttgataa tatgagaagg atgccggcac ccaaaggaca gctcgaaccg       900
     ctcatcgagc tggctttcgc cgtaaaaaat atgtgtgcca ctatgaaagc cagtaatatg       960
     ttggcccatc ttaacaatcc aacactttta caagaaatcg ttgagaagct aggccctgag      1020
     atgatgctga attgggcttt gtactcaaag caattcgact gccccaatct acaacactta      1080
     gcggattgga tgtttgagtt agctgacgca gcttgtcggg taacaactcc agcagtcggc      1140
     aggacagccg agaggagatc attacgccaa ggctgcctaa atacgcacac agcagtggca      1200
     ggctcagctc aacaaagggt cgagcactgc atggtctgcg acgggccgca ctgcatatca      1260
     cgttgcgaaa gtttcgccgg tctgccttat gcggctaaat gggatgtggt gagaacaagt      1320
     cacttgtgca aaatatgttt aaagaggcat aacaaatcct gctggaaaaa aaggtcttgt      1380
     gggatcaaca attgccaagc gatacatcat ccgttattgc atcaggatca gtcgcccgtt      1440
     cccggcgcgc tcaataatca ccgacagccc gaaaacgagg gcgaggaaag ctacttccgc      1500
     atcatccccg tcactctacg agggaaatcg aagctgatcg aaatatacgc gtttatggac      1560
     gacggttcga cgctgactct gctagaggaa tcagtggcca acgagctaga ggaggatggc      1620
     attcccagtc ctctctgcat aagctggaca ggcagtgtac aacgacagga gccctcgtct      1680
     aggcgactcg atctgcgaat ctcaggaact tcccaaaatt ccaaggtgtt caatataagc      1740
     aacgtacaca cagtggccag tttgggcatg acagcggaga ccatgatagc ggaagatgtc      1800
     aaaaggaagt atcgacattt aaaagggatt ccgattaaaa gttataaaca agtggtaccc      1860
     aaaatgatca ttggagtcaa taatccgaat ttaatatctt cattaaaggt acgtgaaggt      1920
     aaatggaacc aaccggtagc agcaaagacc agactaggat ggacagtcta tggaggttcg      1980
     cgacaacgtg gaaatcgttt taatttccat aaatgcgagt gcgacagcga tctacatgag      2040
     atggttaagg cgtacataac cgccgaggat aaagtttcta cgcagcggaa aagcacgcca      2100
     gaggaaagca gagcttccga aattctcatg gagaggacaa catatgacgg aaacaaatac      2160
     actgccgggc ttctatggtt agacgaacac cgttcctttc cagatagttt tccaatggca      2220
     gagagacggc taaaatgcct gcagcgaaaa atgcataacg atcctgagct tgctgttgag      2280
     ctgaaccagc aaatacaaaa tctggtcgac aagggatacg caaaaaagct atcgagtgaa      2340
     gaaaccaaaa aggatgctgc cggcgcatgg tatttgccaa tatttactgt gcgaaacccc      2400
     cacaagccaa accgggtacg attggtttgg gacgcagcag caaaggcctc gaaatattgc      2460
     ttaaacgact atctgttgaa aggccctgac cttttggtcc cacttttgag gataatgtac      2520
     aacttccgaa tgagagccgt cgcaatcagc ggagacatag cggagatgtt ccaccgcata      2580
     gctgtaagac aggaggatgc ttgcgcccaa cgtttccttt ggtgcaatca gtcaggcact      2640
     gccgatgttt accaactcaa cgtgctaaca tttggtgcag cctgctcgcc ctgcatagca      2700
     cattatgtgc gtgacaagaa cgccctaaag cacgcagagg aattcgaggc ggcggcacga      2760
     gccatcacca aatttcacta tgtcgatgac tatattgatt cgtgcgacac tccacaacaa      2820
     gctatcacat tagcaagaga agttaaggag gtacattcca gaggtggctt tcacatgcat      2880
     aagtggtgct cgaaccacaa agaagtggtt gccgatctaa acgggtctac aaaacaggaa      2940
     gagaaggagt tctacaataa cgaagaaatc cattccttcg aaaaaatttt aggcatgcaa      3000
     tggagcccaa gtcaagacgc attcacgtat gctctccgct tcgttcgttt aaaccgaaat      3060
     attatcaagg agaacatagt gcctaccaag agagaagtcc tacaagtcct gatgtctgtc      3120
     ttcgatccca tgggatttgt atcgtgcatt atgatgtatc tcaagatcct gctgcaaaat      3180
     atttggcgca cgaaaatggg ctgggacgac gaactaccgc cggagctgta cgtccagtgg      3240
     aacttatggc tatcatatct gcctttgatt tcacaggtcg ccataccaag acgctacttt      3300
     gaaaacggaa cccctgagga ttgcagcacc cagctgcata tatttgttga tgcaggggaa      3360
     gaagcatatg cagccgtagc gtacttccgt atccaattcc aaggaataat aactgttcgt      3420
     ctcgtttcag ccaaatccaa agtagcccca gtacggccac tctctatacc aagaatggag      3480
     ctacaatcgg cactgacagg tgcacgttta tttcgagata taaaggccca gcatgacatc      3540
     aagttcacgg agacacattt gtggactgat tcgaaaaccg ttctggcctg gttaaatggc      3600
     gatccccgca agtaccagca gttcgtgatg tttcgtctcg cagaaatttc ggagctctcg      3660
     gacgttaacc actggagatg ggttcctagc aagcacaacg tagcggacgt cgctacaaaa      3720
     cgccaaagtg gacccgaagc gtatgatcga tggtttgcag gaccggaatt tctgaggcta      3780
     ccagcggaaa cttggcccat cacagaatca agtcattcaa caacagaaga actgcgaccg      3840
     cgattgctac atatacgaca ggccacaata agaccaaact acgaggcctt ttcaaaatgg      3900
     attacgctgt cgagagccgt tgcctattgg ttcctatata aggaacagct gaccagccaa      3960
     agccgcaagc agtcaaagcc cactcgcatt tcggtatttc atataaggaa tgctcaagca      4020
     tacatatttc gctgcgtaca aatagaaggc ttccccgatg aattcgcgag agtcttaaaa      4080
     tccactccgg tggctcgcag cagtgtgctc tggaggctgc aactatgtat gaacgaggac      4140
     aacataatgc aagtacggaa tcgggtagga aaattcaaga gtacttcaga cgacctcgtg      4200
     atattgccaa ccagtcactg ggttaccaaa ctcatcgttc gacattatca cgagaaatcc      4260
     taccacatca accatgagac tgcgcttaac gaggtgaggc aaaggtttta tattccgaaa      4320
     ctaagacctt tatttaaaca agttcgccga gattgccaac agtgtaaatt ggacagagcc      4380
     aaacctcaac cacctattat ggctccgctc cctccagccc gtttaggagg atttcaacga      4440
     ccctttacgt tcgtgggcat agactacttt ggtccactca cggtcattga cggaagaaag      4500
     tccctgaaac gctggggcat gatctccacg tgccttacta tgagggcaat acatatagaa      4560
     atcgtaaaca gcctgagcac agactcctgc cttatggggc tacgtaactt tatcgcacgg      4620
     cgaggcctcc cacacgaaat ctacagcgat aatggaacta acttccgggg agcggactca      4680
     ttcctccagg aagtccagtt catagacgaa tccaaaatgc accaccacct agcccagcta      4740
     ggaattgaat ggaaattcaa cccgccagca gcgccacaca tgggcggcgc ctgggagcgc      4800
     atggtccgct caataaaaac agttctctac aaaatctctc ctcaccaaaa gttctcggac      4860
     gagagcctaa ggacagcgat gctggagata gagttgacgg ttaattcccg accgcttaca      4920
     tttgtttccc tcgaccatga cgaccaggag gctctaaccc caaatcactt tctgctggga      4980
     tcctcgaacg ggactaagcc attttgcgat ccagaaagaa ttaactaccg atggtgcctg      5040
     cgacaaagcg aacagttcgc taaccaattc tggactcggt gggtcacgga aatccttccg      5100
     acgatcacca ggagaagcaa gtggcacgag aaggtgaaac ctatcgacgt cggagacctc      5160
     gttataattg tcgacgagac tcagcgcaga aatacctggt taaaaggcag agtaatcgaa      5220
     gtaacccgag catctgatgg acaagttcgc cgtgccaagg ttcaaactag agatggcttt      5280
     ctggtgcgtc ctgcagtcaa gttggcggta ctcgatgtcg gcccgattga gagtaagcta      5340
     caggagtctt cgcttactgg ggggggggaa                                       5370
//
ID   BEL-2_DTa-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.08, Created)
DT   29-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DTa_;
KW   BEL-2_DTa-I; BEL-2_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-398
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1588-1588 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 398 BP; 116 A; 87 C; 85 G; 110 T; 0 other;
     tgttgccgaa atcgacgacg gctgaagcac cccagtgaga acatgttcgc ggagttgcca        60
     actctattca tttttatcct attccccttt gctcacggct cgtccagctg ttaatcgctg       120
     agtagctctt actcaccacg cttgcagagc ttacatacat acacacaagt gggatgagat       180
     tgccgattct attttgtggt tcagttgtga atagaaaagc gaagggctag ggtaagaaaa       240
     tctacgtaaa tttaagatca catgtaaaac cttgcatttg cagaaatttt aagcgtcaca       300
     gcgtcaccac gaagagggac agctgaaata aatactagac ttgcatcgga gtttaattta       360
     ttgtacggcg ctgtaaaaac cagcttattt tcgcaaca                               398
//
ID   BEL-2_DVir-I repbase;    DNA;    INV; 5468 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DVir_;
KW   BEL-2_DVir-LTR; BEL-2_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5468
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1775-1775 (2012).
XX
DR   [2] (Consensus)
XX
CC   'ATATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           326..4174
FT                 /product="BEL-2_DVir-I_2p"
FT                 /translation="MMQGENTDDMQSNRVSFLKRKAVALFERAKRIENELS
FT                 EDKINNSCAVDLEVRLLLIEQTKSAFNTAHNSLEELNFDEIGSKLRDDFDE
FT                 LIAMVEARVRVIFSVVNLTARPAQPFMLANRTRLPELKLPTFSGGYTEYSD
FT                 FIAMFESVVDKDTELSNIERLQHLRSCLSGPALDSVRSLEFSGANYPVALD
FT                 ILNRRFSNKRLVFQAHINEILGLKRVDSESASKLREFSDKVNSHMRALQNL
FT                 GSLEQISGCIIVHTLLQRLDTQTQTKWEEAAGIDKIPTADELFTFLERRSQ
FT                 RLESVQHAMSSHITNYQVGKSNHNTNHSKRALVAETNQNGCSFCDASGHGI
FT                 YTCSKFGNLSPSLRHKEVKKLALCYNCLRKGHQTRSCSSSRCRTCGGKHHT
FT                 LLHFATSREADAPTPLHTSADLGAATSTHSHSTTSLAVQGLQSGVVLLATA
FT                 VVLVKNSSGSLFPCRALLDSGSQLHMVTSRFAQRLQLRKTRSSTVVMGLGD
FT                 TSVSTEGSAVRINMKSQDSDYSATFDALVTPTITDSQPSFVIDTSDWKIPS
FT                 NIRLADPAFNKPQRVDLLIGASLFYELLSVGQIVLLPGLPLLQKTRLGWVV
FT                 TGGFERPRSTSLLAAGRTPNSEASQLDVRLDELVRRFWEIESLEEPTVKAT
FT                 KEEAECEQHFANNFSRLPSGEYSVRLPLKRSAELLGESYGQAHLRFLSLER
FT                 KLGRNSHLKEQYSAFIKEFLDLNHMSRVSPELSGCCKYFLPHHCVLKEDST
FT                 TTKLRVVFDGSATTDSGHSLNDVLMAGPIIQPKLFHILIRFRTYPVALTAD
FT                 ICKMYRCVRVTSPDSYFQCILWRDSPQKDIEIFKLDTVTYGTKSASFQSVR
FT                 AMHQLAFDERDAFPIGSDAIKQEFYVDDLISGADSVAEAREKIRQTAGILS
FT                 RGNFKLRKWCSSHQEVLNGIAYEDREQYLKFDDGSDVTKALGLVWDPAIDQ
FT                 LLFSFSVLDCTVKPCRRSVLSIVARFYDPLGLLGPVITKAKIFLQQLCKDK
FT                 LTWDESLPIARDTTWRELCSSFRNIRHVSFPRVVLFEGADVEIHGFCDASV
FT                 EAYGACVYVVARSPLATSRILCSKSRVAPLKTLTVPKLELCGAKLLASLMH
FT                 EVKRTGIFVSQFYCWCDSSVVLSWIRDEPFKFNVFVANRVAAIQELTAGME
FT                 WRYVPTDRNPADILSRGTVPDVLAQSELWFHGPSYLLNGRLNWPATCLPEA
FT                 PTIELRKRVLILKSPHADLTLGCKHANSFGSMQRTFGYVYKFMKRIRHHGL
FT                 TVADIHHGTRGMTSRRFILMEM"
FT   CDS           4021..5007
FT                 /product="BEL-2_DVir-I_1p"
FT                 /translation="MQARQLFWFHAAHIRLCVQIYEAYKASWTHCCRHSSR
FT                 HSWDDIKEIHSHGNVKKSSSVASLAPFLDERDLLRVGGRLNNSSLDYDAQH
FT                 PIILPRRHAITLAVIVQFHERNLHPGPRALLAKIRLKYWPIGGLRTVSKAV
FT                 GRCVRCFRARPIFVEPMMASLPRERLEVVRAFAVTGVDYCGPFFYKSEVRT
FT                 RPSIKCYVSVFICFTSKAMHLELVKDLSTATFLSALKRFIATRGKPSQIWS
FT                 DNATNFVGSKNELVDLKRLLLSDPHMEAVRQFCLADDIEWKFIPPVPALWW
FT                 TMGGGSEVGQAPLLSLCRPLYLPLKSFVLLFAKYSYY"
XX
SQ   Sequence 5468 BP; 1366 A; 1303 C; 1321 G; 1478 T; 0 other;
     tttggaggcc ccggcgagat ttaacattgc agtgcacaca agcaaaataa atctattgca        60
     aattaaaatt gtgattattc aagtagaaca taatcatcgt aaattgttat aattaggcaa       120
     gtgcaaaccg cctgtgtgag ctgaccattt acagctccca aatattcgca tatacataaa       180
     cgccgctagt tgactttcgc gctcttcccc ttgcgcggtc attcgccggc tcagcttata       240
     tacatacgct tgtacataag cagctgcaca attcgtcgca tgttgtgtgc tcagtttggt       300
     gttctgattt tgtgcttgtg aaaaaatgat gcaaggcgag aacacagatg atatgcagtc       360
     aaacagggtg tcttttctta agcgcaaagc ggttgcattg ttcgagcgag ccaagcgtat       420
     tgaaaatgaa ttatctgagg ataaaattaa caactcttgt gccgtcgact tagaagtgcg       480
     ccttttgcta attgaacaaa ctaagtctgc ctttaatacc gcgcataact cgctagagga       540
     gcttaatttc gatgaaattg gcagcaaact acgcgatgat tttgacgagt tgatcgccat       600
     ggttgaagct cgcgttcgcg taatattcag cgtcgtcaat ctaacggccc gccccgctca       660
     acctttcatg ttagccaaca gaacgcgcct gcccgagctc aaattaccaa cattttccgg       720
     tggttatacc gaatattcgg actttatcgc gatgttcgag tcagtcgtcg acaaggatac       780
     cgagctgtct aacattgaaa ggttgcagca tcttcgttca tgtttgtctg gccctgcgtt       840
     ggattcggtt cgatctttgg agttttccgg tgccaattat cccgtggctc tggatatcct       900
     aaatagaaga tttagtaaca aacgtcttgt tttccaggca cacatcaatg agattcttgg       960
     gctcaagagg gtagattcgg agtcggcttc gaaactgcgt gagttctcgg acaaggtcaa      1020
     ttcgcatatg cgtgccttac agaatttggg cagtttggag caaatttcgg gatgcataat      1080
     agtccacacg ctgcttcaaa ggttggacac ccagactcag accaaatggg aggaggccgc      1140
     aggcattgac aaaatcccga cagccgatga gctcttcaca tttctggaaa ggcgtagtca      1200
     aaggctggag agcgtgcaac atgccatgtc atcccatata accaattatc aggtgggcaa      1260
     atccaaccat aacactaacc acagcaaaag agcgcttgta gctgagacta accaaaatgg      1320
     gtgcagtttt tgtgacgcgt ctggtcacgg gatctacaca tgtagtaaat tcggaaattt      1380
     gtctccatcc cttcggcata aggaagtcaa gaaactggcc ctttgttata actgcctaag      1440
     gaagggacac caaactcggt cttgcagtag tagtcgttgt cgtacttgtg gaggaaagca      1500
     tcatacactg ttgcattttg ccacttcaag agaagctgac gcgccgacac cattacatac      1560
     atcggctgat ttgggcgccg ccacttcgac gcactctcac tccactacct ctcttgctgt      1620
     ccaaggtctt cagtctggtg ttgtgctcct ggccactgca gtggtactgg taaagaatag      1680
     ttctggttcc ttgtttccct gtagggcctt attagactca ggctcgcagt tgcacatggt      1740
     cacatcccgt ttcgcacaga gacttcagtt aaggaaaacc aggtcgtcga cagttgtcat      1800
     gggtctcgga gacacaagcg tctctactga aggatcagct gttaggatta acatgaagtc      1860
     acaagactca gattattcag ccacctttga tgctcttgtg actccaacaa ttaccgatag      1920
     tcagcccagc ttcgtcatcg atacatcaga ctggaaaatt ccctcgaaca taaggttggc      1980
     tgatcctgcg ttcaacaaac cacagcgagt ggatctctta attggagcga gccttttcta      2040
     tgagcttttg tctgttgggc aaattgtgct tttgccagga ctacctcttc tgcaaaaaac      2100
     tcgtcttggc tgggtcgtga ccggtggatt tgagagaccg cgcagtacct cgttgttggc      2160
     tgccggccgc actcctaata gcgaagctag tcagttggac gtccgtctgg atgagttggt      2220
     tcggcggttt tgggaaattg aaagcttgga agagcctaca gtaaaggcca ccaaagaaga      2280
     ggcggaatgc gagcagcatt ttgccaataa cttctcccgt ttaccatccg gcgagtattc      2340
     agtgcggttg cctctgaagc ggagtgcgga gcttctagga gagtcttatg gccaggctca      2400
     tcttcgattt ctcagtcttg agcgaaaatt gggtcggaat tcgcatctga aggagcagta      2460
     ttcggcattc atcaaagagt ttctggatct aaatcacatg tcgcgagtta gtccagagtt      2520
     gagtggctgt tgtaaatact tcctcccaca tcattgcgtc ttgaaagaag acagcaccac      2580
     aaccaagttg cgtgttgtgt ttgatggctc agcaactact gattctggac attctcttaa      2640
     tgatgtactg atggcgggac caatcattca acctaagttg tttcacattc tgattcgctt      2700
     ccgcacatat cctgttgctc tcacagctga tatttgcaaa atgtatcgtt gtgtccgagt      2760
     gacttcgcct gatagttact tccagtgcat cctgtggagg gactcgcctc agaaggatat      2820
     cgaaatcttt aaattagata cagtaacata tgggaccaaa tcagcatcat ttcagtccgt      2880
     gcgcgcaatg caccagttgg cctttgatga gcgtgatgca tttccaattg gatcggatgc      2940
     catcaagcag gagttttacg ttgacgattt gatatccgga gccgactcag ttgctgaagc      3000
     cagagagaaa attcgtcaga cggctgggat attgtctcgt ggaaacttca agcttcgaaa      3060
     gtggtgttcc agtcaccaag aagtactcaa tggaatagct tatgaagata gggaacagta      3120
     cttaaagttc gatgatggaa gcgacgtcac caaggccctt ggtcttgtat gggatccagc      3180
     gatcgaccag ttgctatttt cattttctgt tctagattgt actgttaagc cctgcaggcg      3240
     atcagttctg tctattgttg cccggtttta tgatccgctt ggacttttgg gaccagtcat      3300
     aactaaggca aagatatttc ttcaacagct ttgtaaggac aaattaactt gggatgaaag      3360
     cttgccgatt gcacgtgata cgacctggag ggagctatgc agcagttttc gcaacattcg      3420
     ccatgtatcg tttcccagag tagtactctt cgaaggagct gatgttgaaa tacatggatt      3480
     ctgcgatgcc agcgtggagg cctatggagc ctgcgtctac gtagtggcca ggagtccact      3540
     agccacaagt cgtatccttt gctccaagtc tcgagttgcg ccattaaaaa cattgactgt      3600
     cccaaaactg gaattgtgtg gagcgaagct gttggctagt ctgatgcatg aagtcaagcg      3660
     cacaggcatc tttgtcagtc agttttattg ctggtgcgat tcgtccgttg tcctatcctg      3720
     gataagagat gagcccttca aatttaacgt tttcgtggca aatcgtgtgg ctgccataca      3780
     agaactcact gccggtatgg agtggcgata tgttccgacg gaccgaaatc cagctgacat      3840
     tctttctaga ggcacagttc ccgacgtcct agcccagtcg gagctctggt ttcatggccc      3900
     atcgtatcta ttaaatggtc gcctaaattg gccggcgacc tgtctgcctg aagctccaac      3960
     cattgaattg aggaaaagag tactaattct taagtctcca catgcagatt taactctggg      4020
     atgcaagcac gccaactctt ttggttccat gcagcgcaca ttcggctatg tgtacaaatt      4080
     tatgaagcgt ataaggcatc atggactcac tgttgcagac attcatcacg gcactcgtgg      4140
     gatgacatca aggagattca ttctcatgga aatgtgaaaa aatccagctc cgttgcatct      4200
     cttgcaccat ttctggatga acgtgacctc ctccgcgtcg gtggccggct taacaattcg      4260
     tccctggact atgatgcgca acaccccatt atactgcctc ggcgtcatgc aatcacctta      4320
     gctgtcatcg ttcagtttca cgagaggaat ctacaccctg gtccccgtgc acttctagcc      4380
     aaaattcgac ttaaatattg gccgattggt ggattaagaa cagtctctaa agcggtcggt      4440
     agatgtgtga ggtgcttcag agcgaggccc atttttgtcg agcctatgat ggcaagtctt      4500
     ccaagggaac gtctggaagt cgttcgagcc ttcgccgtaa ctggagtcga ttattgcgga      4560
     cccttcttct ataagtcgga agttcgtacg aggccatcca tcaagtgcta cgtcagcgtc      4620
     ttcatttgtt tcaccagcaa ggcaatgcac ctagagctag tcaaggacct atcgactgct      4680
     acatttttga gtgccctgaa gcgattcatc gccactcgtg gcaagcccag tcaaatttgg      4740
     tccgacaacg caacaaactt cgtcggatcg aagaacgagc tggtggattt gaaacgtctc      4800
     ttgcttagcg atccccacat ggaagcagtt cggcagttct gcctcgccga tgacatcgag      4860
     tggaaattca tcccccccgt tcccgcactt tggtggacta tgggaggcgg cagtgaagtc      4920
     ggccaagcac cacttctatc gctctgtcgg ccgctttact tacctttgaa gagcttcgta      4980
     ctcttgtttg ccaaatacag ctattattaa ctcacgccca ttgctctcgc tttcagagaa      5040
     cccagcagat ctagatgtcc tgactcctgc tcatctactg cttggtggtc cttcatcagc      5100
     catcatcgag ccagacttga ccaaattaac tacgaccgtt tggatggctg gcagcgtgtg      5160
     acgcagctac aacaggtgtt ctgggctcga tggcgtgaag agtacctcac cttgctacaa      5220
     cagcgagcca aatggcactc aaacacaagc gttgtgcatc aacgatatgg tgctcgttaa      5280
     agacgaaaat ctgcctccca tgcggtggcc gcttggtagg atagttaact tgattcctgg      5340
     gaaggatgga gtcaatcgtg tagccgatat gaagaccacg gctggaatca tccgaagagc      5400
     cgtaaacaag ctgtgtctgc tgcccctcaa ggattctgtt gaaagtcagg cttccaacgg      5460
     ggggagta                                                               5468
//
ID   BEL-2_DVir-LTR repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DVir_;
KW   BEL-2_DVir-I; BEL-2_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-358
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1776-1776 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 358 BP; 112 A; 65 C; 64 G; 117 T; 0 other;
     tgttggattc tgcagcagcc tcatcaaatt agcataagca aacattcatg taaacataag        60
     aagaggttgt aattttggtc tagtggaaca gctgtttatt ataaacaagg ttggcaagcc       120
     tttcttgcac ttgtcgcagc tgctataaat tgcatattcc ttttttgtct gctctctcag       180
     ttcgttgttg atcgaggcga agcgaagaac caattctgag ccacagccaa ataaccttat       240
     aatctacata aatttgccta ataaactgaa ttataacgtg ttgttgtgaa aggccaaaat       300
     ttacttattt cttggtttag gttctaaaca gttgctaaaa aacattagta actcaaca         358
//
ID   BEL-2_DWil-I repbase;    DNA;    INV; 5494 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DWil_;
KW   BEL-2_DWil-LTR; BEL-2_DWil-I.
XX
NM   BEL-2_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
RN   [2]
RP   1-5494
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..5492
FT                 /product="BEL-2_DWil-I_1p"
FT                 /translation="MNKDQDICSACNKSRLNSSTQHWVQCDNCQKWYHFQC
FT                 AGVNSSIAEAEWICNSCQQALDNVASTSTGRDPSTGAPNIPSANKATEQHC
FT                 PESNAANTSYLGKLNLVEQTQSPSSNYLMLAMLEERREAEKRYIEQKYNLL
FT                 AQQQGTQVTCFQLNGPTASQLAARQVLPADLPIFNGNPEDWPIFISMYENS
FT                 CRIAGFSNAENMLRLQKSLKGKAYELVRDKLLLPILVPDVINTLKTFFGRP
FT                 EQILDRLIDKIRKIYVHKDKLESIVDFAMAVRNACATMEACNLTSHLNNPM
FT                 LLRELIDKLPTQQKLNWAMHPRNESIPVIKSFSDWLYKIAEAAATVMPGQS
FT                 TKANNVNTHSQAHQQPQEGPNNRENGWQQNCKPKLQCVMCASTDHQVALCQ
FT                 SFKRLSVDDRQRIINEAKVCYRCLKSHRRKCFSNRDCGIDNCNSKHHPLLH
FT                 KGTGRTEVVTAHHKDNVVEGQFFRVVPIKLYGANVTFNTFAFLDEGSSVTL
FT                 IDESILDKLKISSTPEPICLQWTGEETRNEEDSVKTHLQISEAGTDKKLWL
FT                 YNVHSVKKLGLPKQTINVEELSKQYPYLRGLPLKSYQNGTPLILIGSNNWN
FT                 LAIPRKIREGRRNEPIASKCTLGWCIQGSTNSSKHVTMHHCECNWSEIDKA
FT                 IKESFTMEPIVSRELQSKNDKRAKGILEDTCKKVNGRYEVGLLWKDDTVIL
FT                 PESYTAALKRLQCLRAKIKRTPELFDKIQSQIDNLLEKGYASELRPEEISD
FT                 RKERVWYLPIFIALNPNKPNKIRLVWDAAAKSHGKSLNDFMLTGPDYLNPL
FT                 TSVLMAFRVGRIAVCADIAEMFHQINIQESDMHVQRFLWLNKNENTPRIFV
FT                 MRAMTFGINCAPCIAHYVRDKNAENYQIKNPRAYESITKAHYVDDLIDSFK
FT                 DDLEAITVASSVRDIHADGGFQIRNWCSNSVSVLQNLGEQQINQHPKELGN
FT                 PEKVLGMYWDPNNDVFKFIFRFSRLKRDVLTYEIAPTKREVLQVLMSIFDP
FT                 LGLLSCYTVGLKMLLQKVWRTGIGWDEDLPEQLLEQWRQWKGVLLHASNLE
FT                 FPRHYSALLLNESQVDLHTFVDASEHAYAAVSYLRIKQGQNISTVLVAAKC
FT                 KVAPLKPVSIPRMELLAAVMGVGLTMRIMSTRGLRIDSCTYWSDSKTVLNW
FT                 LTMDPRRLQSFVMHRVGEIVDKTSPNQWRWVSTKENVADLATKIFKVPDAS
FT                 RWIKGPDFLGLSSDKWPDQKGISENVSQEIELRKNVFVIVKLNHFDFAVEY
FT                 FSDWKRLYRAVANVMLYAQKLRAKCSGKPLPQTLSPENIQAAKSLLCRQAQ
FT                 LATYSNEINSLKDKSVVDKSSSLIALNVYLDSEDIIRVKGRSDSITSDGDA
FT                 IVIPRHSRIAFLIAKDYHEKSHHIFHECTINLIRSVYYIPRLRVLYKIVRN
FT                 ACQHCKISTAKPQVPQMAPIPIARLASFERPFTYTGVDYFGPILVNVGRHK
FT                 EKRWGVLFTCLTLRAVHLEVAYKLDVSSCIMCLKNFMALRGTPREIFSDNG
FT                 TNFKATEKLVKEELVKIDFDQIAVHYEAIKWRFNPPAAPHMGGAWERLVRT
FT                 VKSVLKAICPSSNFNDETLRSALMEAEFIINSRPLTFVSLDTGDDEALTPN
FT                 HLLLGSKAGYKPVSGNVADLRLRWHQTQSFADRFWKRWVKEYTPTLTRRSK
FT                 WFTKRPPVDIGDVVIVVDDNLPRNLWPKGRITDVVTAKDGQVRRATICTPN
FT                 GIMIRPVSKIAVLDVGLKESEHPEVVHGGG"
XX
SQ   Sequence 5494 BP; 1817 A; 1277 C; 1147 G; 1251 T; 2 other;
     tttctttaaa aaaagtttat tgaggttaaa aagtttccgc gtgcccgaat ttcaccatat        60
     gtatcaagtg caaatacata aagacacaca tatacatgta tattagagcg taactacaca       120
     taaagtgttc aaagccatgc atgtgtaaaa aacctttaag tagtacatgc acaaattgca       180
     ggggataaat tcatagcaca atataatcgg aaaccaatag actaaaacaa atccaaagca       240
     tcatgaataa agatcaagac atttgtagtg cctgtaacaa gagtcgccta aacagtagta       300
     cccaacattg ggttcaatgc gacaattgcc agaaatggta ccactttcaa tgtgctggag       360
     tcaatagctc aatagcagag gctgaatgga tttgcaacag ctgccaacaa gcgctggaca       420
     acgtggcatc aacaagcact ggtcgtgacc cgtcaacagg agcgcccaat ataccaagtg       480
     ccaacaaggc caccgaacaa cattgccccg aatctaacgc ggcaaatacg tcttatctcg       540
     gcaaactaaa cttagtcgag caaactcaat cgccaagctc aaattatttg atgttggcaa       600
     tgctggagga aaggcgggaa gccgaaaaaa gatacatcga gcaaaaatac aacttgcttg       660
     cacagcagca aggaacgcag gtaacgtgtt tccaattaaa tggacctact gcttctcagc       720
     tagccgcaag gcaagtttta cctgcagatc tacccatctt taacggaaat ccagaggact       780
     ggccaatctt tattagcatg tacgagaaca gctgccgtat agcggggttt tcaaacgccg       840
     aaaacatgct acgacttcag aagagcctca aaggtaaagc ctacgaacta gttcgtgata       900
     agctactgct gccaatactg gttcctgatg ttattaatac gctcaagaca ttcttcggac       960
     gcccggagca aatactcgat cgattgatcg acaaaataag aaaaatatac gtacacaagg      1020
     ataaattaga atccatcgtt gatttcgcaa tggcggtgag aaacgcatgt gcaaccatgg      1080
     aagcgtgcaa tttaacctca catttaaata acccgatgct tcttcgagaa cttatcgaca      1140
     aactacccac ccagcaaaag ttaaactggg ctatgcatcc acgtaacgaa tccatcccgg      1200
     ttataaaatc atttagcgat tggttgtaca aaatagctga ggccgcagcc actgtcatgc      1260
     ctggccaaag cactaaggcc aataatgtca acacacactc gcaagcacat caacaaccac      1320
     aggaaggacc aaataatcga gagaatgggt ggcaacaaaa ctgtaagccg aagctacaat      1380
     gcgtgatgtg tgcttccacg gatcaccagg ttgctctatg tcaaagcttc aagcgactgt      1440
     cggttgacga taggcaacga ataataaacg aagccaaggt atgctacagg tgcctcaaaa      1500
     gtcaccgccg taaatgcttc tctaatcgtg actgcggaat cgacaattgc aactcaaaac      1560
     atcacccgct tcttcacaaa ggcacaggca gaaccgaagt tgttactgct catcataaag      1620
     acaatgtagt ggaaggacaa ttttttcgtg ttgtacccat caaactgtat ggagccaatg      1680
     taacctttaa cacgttcgca tttttagatg agggctcatc agtcactctc atcgatgaaa      1740
     gcattttgga caagctgaag atctcttcaa cgccagagcc aatttgcctg caatggaccg      1800
     gtgaagaaac cagaaacgaa gaggactccg ttaagaccca cctacaaatc tcggaagcgg      1860
     gaactgacaa aaagctatgg ctctacaacg tccactcagt aaagaaatta ggattgccga      1920
     aacaaaccat caatgttgaa gaactatcca agcaatatcc ttatttgcgt ggtttgccgc      1980
     taaagtcgta ccaaaacggt acaccactaa ttttaatcgg cagcaacaat tggaatctag      2040
     caataccccg caaaatccgc gagggcagac gaaacgaacc cattgcttca aagtgcacat      2100
     taggatggtg catccaagga tcaacaaact caagcaaaca cgtaacaatg catcattgcg      2160
     agtgcaattg gagtgaaata gataaagcca taaaggaaag tttcacaatg gaaccaatcg      2220
     tatctagaga attgcaatcc aaaaacgata aaagggcgaa gggcattctc gaagatacct      2280
     gcaaaaaggt caatggtcga tacgaagtcg gcctactctg gaaagacgac acagtcattt      2340
     tacccgaaag ctataccgca gcgctgaaac gcctccaatg cctacgggcc aaaattaaaa      2400
     gaacgccgga actgtttgat aaaattcaat cacaaattga caatctatta gaaaaaggat      2460
     atgcatcgga gctcagacca gaagaaatat ccgatcgaaa ggaacgcgtc tggtatctcc      2520
     caatatttat tgctttaaat ccgaataagc caaacaaaat acgactagta tgggatgccg      2580
     ccgccaaaag tcatggaaaa tcgctgaatg attttatgct tactgggcct gattatctaa      2640
     atccattgac ttctgtccta atggccttca gagtaggacg gattgccgtg tgcgcagata      2700
     tagccgagat gtttcatcaa ataaacattc aggaaagcga catgcacgtc cagcggttct      2760
     tatggctcaa taaaaacgag aacactccaa ggatcttcgt tatgcgcgcg atgacatttg      2820
     gaattaattg cgcaccttgt attgcccact atgtacgcga taaaaatgca gagaattacc      2880
     aaatcaaaaa tccacgagcg tacgaatcca ttacaaaggc ccactacgtg gacgacctca      2940
     tcgacagttt caaagatgac cttgaagcca taacagttgc atcatcagtt agagacatac      3000
     atgccgatgg tggattccaa ataagaaatt ggtgctcaaa ctctgtatct gttctccaaa      3060
     atctaggaga acagcaaata aatcaacacc ccaaagaatt agggaaccct gaaaaggtcc      3120
     tcggtatgta ttgggaccca aataatgacg tttttaagtt tatcttcaga ttttcgagat      3180
     tgaaacgaga cgtcctaacc tatgagatag caccaacgaa acgagaggtc ttacaagtac      3240
     tgatgtctat atttgatccc ctcggtctat tatcgtgcta caccgtaggc cttaaaatgc      3300
     tgcttcaaaa agtctggcgc acaggaatag gatgggacga agatttaccc gaacaactcc      3360
     tcgaacagtg gcgacaatgg aaaggtgtcc tactacacgc cagcaattta gaatttccgc      3420
     gtcactactc tgctctgctg ttaaacgaaa gccaggtaga ccttcatacc ttcgtagacg      3480
     caagcgaaca tgcctacgcc gcagtaagct atcttcgcat taaacaaggt caaaacataa      3540
     gtacagtgtt ggtagcagcc aaatgtaaag tagctccact caaacctgta tctatacctc      3600
     gaatggaact tttggcagcc gtcatgggag taggcctaac aatgcgtata atgagcaccc      3660
     gaggcctaag aatcgattcc tgcacatatt ggtccgattc taaaacggtc cttaactggt      3720
     taaccatgga cccaagaaga ctccagtcat tcgtcatgca tagagtgggc gagatagtcg      3780
     acaaaaccag cccaaaccaa tggcgctggg ttagcacaaa ggaaaacgtt gcagacttag      3840
     ccacaaaaat tttcaaagta ccagatgcat ctcgttggat taaaggaccc gattttctag      3900
     gactgtctag cgacaagtgg ccagatcaaa agggaatatc tgagaacgtc tcacaggaaa      3960
     tcgaattgcg taagaatgta ttcgtcatag taaagcttaa ccatttcgat tttgcagtag      4020
     aatacttttc tgactggaag cgcctatatc gagcagtggc caacgtcatg ctgtacgccc      4080
     aaaagttacg cgctaagtgt tcgggaaagc ctctaccaca aaccctaagc cccgaaaata      4140
     tacaagcagc aaaatctctt ttatgcagac aggcccaatt agcgacgtac tcaaatgaaa      4200
     tcaattcgct caaagacaaa tcagtggtgg acaagtcaag ctcattaatt gctttaaatg      4260
     tttacctgga ctcagaagac atcatccgcg tgaagggcag gtcagacagt ataacttctg      4320
     acggtgacgc aatcgtaatc ccaagacaca gcagaattgc ctttttaatc gcaaaggatt      4380
     atcacgaaaa atctcaccat atatttcacg agtgtactat caaccttatt agaagcgtat      4440
     attatatacc acgcctaaga gtactatata aaatcgtccg aaatgcatgc caacactgca      4500
     aaatatccac agcgaagcct caagtgccac aaatggcacc tataccgatc gccagactag      4560
     cttcttttga acgaccattc acatatacgg gagtcgacta tttcggcccc atactagtca      4620
     acgttggaag acacaaagaa aagcgctggg gagtcctatt tacgtgccta acactaaggg      4680
     cagttcatct agaggtcgcc tacaaactcg atgtgagctc atgtataatg tgcctaaaaa      4740
     acttcatggc actacgtggc acaccgagag aaatcttctc cgacaacgga accaatttca      4800
     aagctacgga aaaactagtt aaggaggaac ttgtgaagat tgacttcgat cagatcgccg      4860
     ttcactatga agctataaaa tggcgtttta acccaccagc cgcaccccac atgggaggag      4920
     cgtgggaacg tttggtccgg actgtaaaat ccgtcctaaa ggccatttgc ccctctagca      4980
     actttaatga cgaaacwctt cgaagtgcct taatggaagc cgaatttata attaactcca      5040
     ggcctctaac gtttgtttct ttagatacag gtgacgatga agcgcttaca cccaaccact      5100
     tgcttctggg atcaaaagcg ggctacaaac cagtatcagg maatgtcgcc gacctaaggt      5160
     tacgatggca tcaaacgcaa tcgtttgctg atcgcttctg gaaaagatgg gtgaaggagt      5220
     acacaccaac attaactcga cgcagcaaat ggtttactaa gcgtccacca gtcgatatcg      5280
     gagatgtagt tattgtcgtg gacgataatc tgccgaggaa cctgtggcca aaaggccgca      5340
     taaccgatgt cgtaaccgcc aaagatggcc aagttcgcag agcaaccata tgcacaccaa      5400
     acggcatcat gatacgcccc gtttccaaaa ttgctgttct agacgtcgga ttaaaggaaa      5460
     gtgaacatcc tgaggtcgtt cacggggggg ggaa                                  5494
//
ID   BEL-2_DWil-LTR repbase;    DNA;    INV; 332 BP.
XX
AC   scaffold_177039;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_DWil_;
KW   BEL-2_DWil-I; BEL-2_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-332
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_177039; Positions       1     332.
XX
SQ   Sequence 332 BP; 113 A; 67 C; 64 G; 88 T; 0 other;
     tgttaccgcc gtcattacaa atttaaatat taaccgtcaa cccgaaaata ctgggttatg        60
     gcagccctga aaataccatg gtatggcagc cctgaaaaac acgagcggga ccgaccgaga       120
     gtttggcgtc agtctgtgat ggcaccaggg gaagaaagcg acaaactttt ttaaagcgtc       180
     tcgttaaaag atttattaaa agcgttagga agccttcttc gtttaaaatg tcaaattaca       240
     tcacacatgt tgtaaaatcg cgctaaataa actaaatgct atataaactg ttacttaagt       300
     ttgttttaat acaaacaaaa ccccgtgcgt ca                                     332
//
ID   BEL-2_FoCa-I repbase;    DNA;    INV; 5486 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5486
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2583-2583 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..5448
FT                 /product="BEL-2_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAPSAIDKAVHDRSSISDTLDFLEVEVTNHATTPLDE
FT                 AGINHLLVMAKTSQLEVMDIHKKIQATAPADMTPHVTEYQRLLRKACRIVT
FT                 TMTGFKLKIPGTPTVSTSTTNSEIRLPILELPTFDGNLHEWVSFRDMFVTA
FT                 VHDNTKLSKSQKFTYLKSQLKGEAARQLQSMIITDANYDIAWSQLSDRYQN
FT                 DRELLFAIMRKFTNQPIVQSQSATAIRQLVDVSRECIRSLQVLKLPTDQWD
FT                 AILLFLMMMKMDSSSKELWEQSLNDSAIPTLKSFFDFLEQRARALAASGTS
FT                 TTPKNASKSNNNYHGDKSRTPRSLVHVTATKSSNSCKCCDEPSHPIYRCEK
FT                 FIQFPVQQRCEVTRKHNFCYNCLTEGHQVSKCTSNKGCRTCGGRHHTMLHR
FT                 PTPSDHSTGTRPRDDPNGGAIVHLTSTSTSQGYNNKSNVETPPQSSRSFSL
FT                 GKEYDTLLATALVQVLDKHGHYHTVRILADNACNTNFATESCARRIGLPRR
FT                 RYLTSATGLGGAAVATSSGFTWFTITPHFDTSVTFTVSRCLLTNKITGKLP
FT                 TSKFDHTRWPHLQGINLSDPSYHEPEEVDMLLGAEFFFAILEGGKRSGPPN
FT                 SPVALETSFGWLIGGGSSDSPLIQPTVHTTLTPKETTTPNSTHFSSTSDQE
FT                 DEHLDSLLRKFWEMENEPPTRLLSPEESAAETHFTSTYTRDDEGRFMVRIP
FT                 FKTPRPKLGHSLKIAEKRLMYLERRLQANPTYRQEYHSFMKEYEQLGHMTE
FT                 VTNLDSESGNKCYLPHHFVLKPSSTTTKFRVVFDASAKTSNNISLNDTMLV
FT                 GPTIQDPLIDLLIRFRLHRIAFTADIAKMYRQILVHPEDAEMQRILWREDS
FT                 SGPIRHYKLNTVTYGTASASFLATRAVKEVSTVEKKNYPQAAEAAARDLYM
FT                 DDLMSGEPTIKQALNTQTQIIALAKSACLSLRKWSSNSQAVLDSLPPEMRE
FT                 TQSLDLFDLDSSVKTLGISWNPKSDHFFFRFNPQPNGNKPLNKRTVLSEIA
FT                 RLFDPIGWLAPIMINAKILMQSLWKLHQGWDDELPQDVQQQWMEFKVDLQQ
FT                 LCKLKIKRCFFKDSSITCPSLNIPYPLTTLKICLAGFCDASEKAFAAVVYL
FT                 CAYQGSCSSISLITSKTRVAPTKVVSLPRLELCGAVLLAELIPKVKTALKI
FT                 PIHSVSAWTDSTVTLAWIKSNPSRWKTFVANRVTRIQDKVPLESWSHVRGD
FT                 DNPADCPSRGIKCDELIHHPLWWNGPSWLKCGIPNPTKVQVLESEDVSKEE
FT                 RQVTCHITLSDTDQALLCGTSSLRKLQRVTAFVLRFVRNCRNPNLHPQKTK
FT                 SHHPLTPGELHQALNHWVKVVQHQAFYEDLQQLKKGQPLHSKSKILSLSPF
FT                 LDETGVIRVGGRLKSSSLSPDQKNPILLPYHGQLTHLIIQDAHIRHFHAGP
FT                 QLMMAVIQRQFWIIRARDAIRYFTRKCVNCIRQRASTMQQVMADLPAFRVN
FT                 QSRPFLKCGVDYAGPFMLKPLLKGSKITIKAYLAVFVCCVTRALHLEVVSD
FT                 LTTEAFLAALKRFIARRGRPTDVYSDCGTNFVGAMNEMKDVMRLLLSKSHN
FT                 DKIANYMSTDGITWHLNSPASPHFGGLWEAGVKSIKYHLRRVIGLQRLNFE
FT                 EMTTAICQIEAILNSRPLTAESTDPQDLAALTPGHFLIGAPLTAIPEPSLD
FT                 HIKQNQLSHWQLLQQLMQSFWKRWSAEYLTRLQQRPKWMAGNKKISVGELV
FT                 LIKDENLPPLKWKLGRVLALHPGPDSIVRVVTLKTSNGEIKRPIVKICPLS
FT                 VPSSDPNQDDDLVLTL"
XX
SQ   Sequence 5486 BP; 1563 A; 1596 C; 1073 G; 1253 T; 1 other;
     ttttggtctc tccgaaccgg atatctctac cggtaattaa agtgtgataa tagtgattaa        60
     aaccccctga agccaaaagc aacacccatg gcaccttcag cgatcgacaa agcagtgcac       120
     gaccgcagca gcatcagcga caccctcgat ttccttgaag ttgaagtcac caaccatgca       180
     accacacccc ttgatgaagc cggaatcaat catctccttg taatggcaaa aaccagtcaa       240
     ttagaagtga tggatattca taaaaagatt caagcaacag ctcctgccga tatgactccc       300
     cacgttacgg aataccaacg tcttcttcgc aaggcgtgtc gtatcgtcac aacgatgacc       360
     ggtttcaagc tgaagattcc tggcaccccc accgtctcga catccacaac caacagcgaa       420
     atccgacttc ctatactgga gctacccacg ttcgacggta atctccacga atgggtgtca       480
     ttccgtgaca tgtttgtaac tgcagtccac gacaacacca agttaagtaa atcccaaaaa       540
     ttcacttacc tcaaaagcca attaaagggt gaagcagccc gacaactcca aagtatgata       600
     atcactgacg ccaattacga catcgcatgg agccagctat ccgaccgcta ccagaatgac       660
     cgtgagctcc tttttgcaat catgcgaaag tttacaaatc aaccaattgt tcagtcccaa       720
     tcagcaacag caattcgtca acttgtggac gtatcaagag aatgcatccg atcccttcaa       780
     gtcctcaaac tacctacaga ccaatgggat gctattctac tcttcctaat gatgatgaag       840
     atggattcct cctccaaaga attgtgggaa cagagcctga acgatagcgc tatcccaacc       900
     ctcaagtcct tcttcgattt cctagagcag cgtgcccgcg ccctcgccgc cagcggaacc       960
     agcacgaccc caaagaatgc aagcaaatcc aacaacaatt atcatggcga caagagccga      1020
     acccctcgaa gtcttgtcca tgtcaccgcg acgaagtcgt ccaattcctg caaatgttgc      1080
     gacgagccgt ctcatcccat ctaccgctgt gagaagttta tccaatttcc cgtccagcag      1140
     cgttgtgaag tcacccgtaa gcacaacttt tgctataatt gtctaactga gggacatcag      1200
     gtctcaaagt gtacgagcaa caagggttgt cgtacgtgcg gtggaagaca tcataccatg      1260
     ctacaccgac ccacgccatc ggatcactca accggcacca ggccaagaga tgaccccaat      1320
     ggtggtgcta ttgtgcacct cacgtctact tcaacatccc aaggctacaa caataaatca      1380
     aatgttgaaa caccccctca atcaagtcgt tctttctctt tgggcaagga gtacgacact      1440
     ctcctcgcca cagcactggt gcaagtcctt gacaagcacg gtcactacca tacagtaaga      1500
     attctcgctg ataacgcctg caacaccaac ttcgcgacag aatcctgcgc ccgtcgtatc      1560
     ggcctaccac gtcgacgata tctcacgtca gcaactggac tcggtggagc agcagtagct      1620
     acgtcatcag gattcacttg gttcacaata actccccatt tcgacacatc cgttaccttt      1680
     actgtctcaa ggtgcctcct tacaaacaag atcactggta aacttccaac ttccaaattt      1740
     gaccacacca ggtggcctca tctgcagggt atcaatctct cagacccttc gtaccacgaa      1800
     cctgaagaag tggatatgct cctgggcgca gaatttttct tcgccatcct agaaggtgga      1860
     aagaggtccg gtcctcccaa cagtcccgtg gctcttgaaa ccagtttcgg ttggctgatt      1920
     ggtggtggat ctagcgattc tcctcttatc cagcccacgg tgcataccac tctcacgcca      1980
     aaggaaacta caacaccaaa ctcgacacac ttctcatcga ccagtgatca agaagatgaa      2040
     caccttgaca gcctccttcg caagttttgg gaaatggaga atgaaccacc cacacgacta      2100
     ctttcccctg aagaatcggc cgcagaaaca cacttcactt ccacatacac ccgtgatgat      2160
     gaaggaagat tcatggtgag aatccccttc aagaccccac gaccaaagct gggtcattcc      2220
     ctcaagattg ctgagaagcg tctcatgtac ctcgagcgac gacttcaagc aaaccctacc      2280
     tatcgccaag agtatcactc cttcatgaag gaatacgagc agctcggaca catgacagaa      2340
     gttaccaatt tggactccga atcgggtaac aaatgctatt tgccccatca ctttgtgctg      2400
     aaaccctcaa gcacaacaac aaagttcagg gtcgtctttg atgcatctgc caagacatcc      2460
     aacaacattt ctctcaacga cacaatgtta gttggcccaa ctattcaaga tcccctcatt      2520
     gacttactaa tcagattcag gctacaccga atagcattta cggcagacat cgccaagatg      2580
     taccgtcaga ttcttgtcca cccggaagat gctgagatgc agcgaatctt gtggagagaa      2640
     gactcctcag gccctatacg ccactacaaa ctcaacactg ttacctatgg kacagcatcg      2700
     gcatcattcc ttgccaccag agcagtcaag gaggtctcaa ccgtagaaaa gaagaactac      2760
     ccccaagcag cagaagccgc cgcgcgcgac ctatacatgg atgacctgat gtccggtgag      2820
     ccaactatca aacaagccct caacacccaa actcagatta ttgcccttgc caagtctgca      2880
     tgtctcagcc tacgcaaatg gagttccaac tcgcaagctg tgttggactc gctgccccca      2940
     gaaatgagag agacccaatc tctcgacctc ttcgatttgg attcaagcgt gaaaaccctc      3000
     gggataagtt ggaatccaaa atctgatcat ttcttcttca gatttaaccc gcaaccaaat      3060
     ggtaataagc ctctcaacaa acgcaccgtc ctgtccgaaa tagctcgcct cttcgacccg      3120
     atcggttggc tagcccccat catgataaac gccaagattt tgatgcaatc attgtggaaa      3180
     ttgcatcaag ggtgggacga tgaacttccc caagacgttc aacaacaatg gatggagttc      3240
     aaagtggacc tacaacaact ttgcaaacta aaaatcaagc gttgtttctt caaagattca      3300
     agcataacct gcccaagtct caatatcccc tatccgctca caaccctcaa gatttgcctt      3360
     gctggattct gcgacgcgtc tgagaaagca ttcgccgctg tcgtatactt atgcgcctac      3420
     caagggtcat gctcatcaat ttctctcatc acatccaaaa cccgtgtagc cccaaccaaa      3480
     gtcgtctctc ttcctcgcct cgaattgtgt ggagcagttc tattagccga actcattccc      3540
     aaagtaaaaa cagctctcaa gatcccaatt cactccgtca gcgcctggac ggactccaca      3600
     gtcacactcg cttggatcaa gtccaatccc tcccgatgga agaccttcgt ggccaacagg      3660
     gtcacaagga ttcaagacaa ggttcccctc gagtcatgga gtcacgttcg cggagacgac      3720
     aacccagccg actgcccatc tcgtggaatc aaatgtgacg aacttattca tcatcccctc      3780
     tggtggaatg gtccatcatg gctcaaatgt gggataccaa atccaaccaa ggtccaagtc      3840
     ctcgaatctg aagacgtgtc caaggaagaa cgccaagtaa cttgtcacat cacgttatcc      3900
     gataccgatc aagcattgtt atgtgggacc tcatcactcc gaaaattgca acgagtcacc      3960
     gcattcgtac ttcgtttcgt aaggaattgc agaaatccca atctccaccc gcaaaagacc      4020
     aagtctcatc acccgttgac cccaggtgaa ctacatcaag ctttgaatca ctgggtcaaa      4080
     gtcgttcagc accaagcttt ttatgaagat cttcaacaac tgaagaaagg acaaccactc      4140
     cacagcaaga gcaaaattct ctccctttcc ccatttctgg acgaaactgg tgttatccgt      4200
     gttggaggtc gtctcaaatc ctcatcactt tctccagacc agaaaaatcc aattctcctt      4260
     ccgtatcatg gccagttaac ccacctcatc atccaagacg cccatatccg acactttcac      4320
     gccggacctc aactaatgat ggcagtgatc caacgccagt tttggatcat ccgagccagg      4380
     gacgctattc ggtactttac acgaaagtgc gtgaattgta ttcgacaacg agccagcacc      4440
     atgcagcaag tgatggctga cctaccagca tttcgcgtca atcaatcccg accctttctc      4500
     aaatgtggtg tggactacgc tggacccttc atgctcaagc ccctactcaa aggaagcaag      4560
     atcacaatca aagcgtattt agcagtattt gtatgctgtg taactcgtgc cctccaccta      4620
     gaagtcgtga gtgacttaac tactgaggca tttctcgccg ccctgaagag attcattgcc      4680
     cgcagaggtc gacccaccga tgtctacagt gactgcggta ccaatttcgt tggagccatg      4740
     aacgagatga aggatgtcat gagacttctc ctttcaaaat cccataatga caagattgca      4800
     aattacatgt caactgatgg aataacctgg catctaaata gtcctgcctc tccccatttt      4860
     ggaggactct gggaagcagg agtgaaatct atcaagtacc acctccgccg agtgattggc      4920
     ttgcaacgcc tcaacttcga agagatgacg acagcaatat gccaaataga agcaatcctt      4980
     aactcaagac ccctcacagc agaatccact gatccccagg atttagctgc cttaacgcca      5040
     ggccacttct taatcggtgc ccccttgact gcaatccctg aaccgtcact cgaccacatc      5100
     aagcaaaatc aattatccca ttggcaactg ctgcagcaac tgatgcagtc attctggaaa      5160
     cgctggtctg cagaatatct cacgcgccta caacaacgcc caaagtggat ggctggaaac      5220
     aagaagatat cagttggtga actggtactt atcaaagatg agaacctccc cccattgaag      5280
     tggaagctcg gacgcgttct cgcccttcat cctggacccg attcaatcgt tcgagtcgtc      5340
     accctcaaga catccaacgg tgaaatcaaa cgccccatcg tgaaaatttg cccactttcc      5400
     gtaccttcat ccgaccccaa tcaagacgac gatttagtgc ttactttgta attatttttg      5460
     aaatagttat ttcaacccgg ccggaa                                           5486
//
ID   BEL-2_FoCa-LTR repbase;    DNA;    INV; 590 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-590
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2593-2593 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 590 BP; 167 A; 126 C; 70 G; 227 T; 0 other;
     tgttgggatt cgtacagttt taaactttag ttcaagtttt atccaaaata accttcaata        60
     atcattatgc tatgcttatt tatttatgta attttgtgca ctgacttgag ttcattcctt       120
     atcgtatttt acatttaagt tacccatgta acttcatttg agtaattgtg tacgagttca       180
     tttcctttaa tctctattgt gactaataag ttgaacccga gttctaagta ttcttatttt       240
     accttgacag taactttcca gaaggtctaa ttttacatac ttaattgctc atttacttac       300
     cataggttat aaatacaagt tacatatttt tcctcgttgt cattctgctt acacaatttg       360
     tccaagtcag tcaggtcacg tcagtctatt ttcctaatct caatttgcct caatttgtat       420
     gaatttaata acttgtataa actgactaca atcaagtact tcacattgcc atcttatttc       480
     tcaccgatcc atacacatat ttgcacacat ttcaataccc ataatcaggg aacactcatt       540
     tttatcactc acacaaaccc cctgctcgtt gggagccgtc atccccaaca                  590
//
ID   BEL-2_HMM-I repbase;    DNA;    INV; 5827 BP.
XX
AC   CAEZ01008606;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_HMM_;
KW   BEL-2_HMM-LTR; BEL-2_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-5827
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01008606; Positions   13656   19482.
XX
CC   Positions [4488-5090] - Integrase core
CC   'ATTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           231..5441
FT                 /product="BEL-2_HMM-I_1p"
FT                 /translation="MSQERIQTTAEQDKYLTTLQEVYNIIQKTQINLKKCP
FT                 KQRLTKGYIQARLKILEDYWNTFKQAHSNLTICTPREQKGILPYFLNEDYY
FT                 QVEDLYLLLHADLSDHLIKMEAPEIANVSTVSQDAQLFSSPFVSSLPRIQL
FT                 PTFSGRYEDWPTYHDLFTALVHNTNLSNVQKLHYLKTSVSGEAELLLRQIQ
FT                 TLETNYVQAWDLLKGRFGNKKMILNSLLKRLFGQKKVSSQSSSQIKNILDT
FT                 TTECINSLNNLQINTSSWDPVIIFLVSQRLDPETLKDWEEFTYNNNTDQLP
FT                 TWDMLKGFLEAKFRTLELIMPMSIHSKEKSQTHKLFHVSTETTESKNIFQS
FT                 AHAGVSTHPTCTYCKNCHYLFQCKDFAKLSVEQRQDVVKKNRLCFNCLIPN
FT                 HNVFKCKQTTSCRVCHRKHHSLLHQSRDTNEKKDFDKAVQLEQRITTAHFS
FT                 QHQPDHEVLLATAQVEVKSCCGHKHLLRALIDQGSEASFVSARVVDLLGLS
FT                 KTKIDGVVSGVGEGNQTPIKHLVDLTITSRFNANDDIQVKAYVLKTISTRL
FT                 PSKHIAINCSQLQTLPLADPTYNTPGRIDILLGSDIFCKIIEEGLLKMNEG
FT                 VVAQKTCLGWILSGQRENKVTMNNKEHNITTLHITRIVKEDNDILRKFWEI
FT                 ETEPYTKKKIFTKEEEMCEKIYKNTTKRDTEGKYIVHLPLKCSTGEAVNLC
FT                 GDTKEQAIRRFQCLERKFVKSEVLKAEYSKVINEYMDMGHMKKVETTDDNN
FT                 SIYLPHHAVIREDKETSKVRVVYDASAKGSNGYSLNDCMMVGPVLQPDLRS
FT                 LITSWRTHKICVVGDIVKMYRMINMTQEHTNLQRIIWRDNPDKEVEAYNLT
FT                 TVTFGTASAPYLAVRTLQQLADDEAHEYPDIAPVIKKCFYMDDLMIGNENV
FT                 EETKKMCNEIKTVLKRGGFEMQKWSSNSEEIMEYLQEEETKNTVEIKLNKI
FT                 IKILGLTWDRKDDTFKITVNLPEMRYPITKRSILSDVARLFDPFGWLSPVV
FT                 ISAKILIQKLWLCSLGWDDELPSNLNEEWIIYRERLIYLQNIKVPRWFKTT
FT                 SENYNHVTMHGFADASTQAYAAVVYLRIEEGDKVHVVMIASRTKVAPLKQL
FT                 SVPKLELCGSVLLANLIIDLMEILKIPKERVFAWTDSTVVLSWLQSHPGRW
FT                 HTFVANRIAEITRVIDNDRWRHVQSADNPADIATRGIAACDLASHENWWSG
FT                 PKWLKKDMSTFIINREDIPETQLELKIKCNFIVDEKPIWERFSTISRMKRV
FT                 LAYCKRIFKKEKIEHKEKYLHAVEMQNILEECIRYYQNLVYEKEIQEIKKD
FT                 GKVKVRSSLISLSPFLDEKGILRVGGRLKNASIPELTKHPIIIPANQHITK
FT                 MLVNEAHTRTLHGGIQLMMSYLRSAYWIVGLKSFVKKCIRSCKTCIVDKAK
FT                 TKYQLMGNLPAVRVNQHRAFLNSGVDFAGPIMIRTSKGRGHHTSKGYICLF
FT                 VCMATRAIHLEAVTDLTSQAFIAAFRRFVARRGYCRHLWSDNGTNFVGAAK
FT                 DLKDLFQTSKNSMVKEVSEILANDGTTWHFIPPRMPTCGGLWEAGVQSAKK
FT                 HLVRINKNTKLTYEEMATLLAQIEACLNSRPLCQIDNTTEEVLTPGHFLVG
FT                 EPLVSVPDICYENKNINLLTRWQFIQKLTQHFWHKWKTEYLNTLQQRHKWQ
FT                 KIHSSPTVGDIVVVKDEIVPPTKWLLGRIKQLHPGTDDIVRVVTVQCKGDH
FT                 EIKRPLYKLIPLPKDLE"
XX
SQ   Sequence 5827 BP; 2189 A; 899 C; 1140 G; 1599 T; 0 other;
     tatggcctat aacgagccgg atttggaaag catcggacgg acgattagcg actcgaccgg        60
     aagcgaagac aaaaggctgc cgcattcctt agataagccg cgagttgttt acttgaagat       120
     tcattgcaat cgattgaaca aagtttttat gtgaacttta ttgtaagtgg aataagactc       180
     aaatttgttt gtatcgaatt gaacatattg gtgcgtttta attaaaaatc atgtctcaag       240
     aaagaataca aactacggcg gaacaagaca aatatttaac tacattacaa gaagtctata       300
     atattataca gaaaacgcag attaacttaa aaaagtgtcc gaaacaacga ctcactaaag       360
     gttatataca agcaagattg aaaattctcg aagattattg gaatacattt aagcaagctc       420
     atagcaacct tacgatatgc acgccgcgag aacaaaaggg gatattaccg tattttttaa       480
     atgaagatta ttatcaagtt gaggatcttt atttgttatt acatgcggat ttaagtgacc       540
     atttaataaa gatggaagcg ccggagatcg ccaacgtgtc aaccgtaagt caagatgctc       600
     aattattttc gtcgccattt gttagtagct tgccacggat acaattgcct acattctcgg       660
     gaagatacga ggattggccc acttatcacg atttgtttac agctcttgtc cacaatacaa       720
     atttaagcaa tgttcaaaag ttacattatt taaaaactag tgtgtctggg gaggcagaat       780
     tattattaag acaaattcaa acattagaaa ctaattatgt acaagcatgg gatttactta       840
     aggggcgttt tgggaataaa aaaatgattt taaattcact tttaaaaaga ttatttggtc       900
     agaaaaaggt tagtagtcag tcatctagtc aaattaaaaa tattttggat acaacaacag       960
     aatgtattaa cagtttaaat aatttacaaa ttaacaccag ctcttgggat cctgtaataa      1020
     tatttctggt cagtcagaga ttggacccgg agactttaaa ggattgggag gaatttactt      1080
     ataacaataa cactgatcaa ttaccaactt gggatatgtt gaaagggttt cttgaagcaa      1140
     aattccgtac actagaatta attatgccaa tgtcaataca ttctaaagag aagtctcaaa      1200
     cacataaatt atttcacgtc tcaacagaaa ctacagaaag taaaaatata tttcaatctg      1260
     cacacgccgg tgtaagtaca catcctacat gtacttattg caaaaattgt cactatctat      1320
     ttcaatgtaa ggattttgca aagctatctg tcgagcaacg gcaagacgtt gtcaaaaaga      1380
     atcgtttatg cttcaattgc ctcataccta accacaacgt ctttaaatgt aaacaaacaa      1440
     catcatgtcg agtttgccat aggaaacatc actctctgtt acaccagtct agggacacca      1500
     atgagaaaaa ggatttcgat aaagcagtac aattagagca gaggattaca actgcacatt      1560
     tttctcaaca tcaacctgat catgaagtgc tacttgctac agcacaagta gaagttaaat      1620
     catgttgtgg acacaaacat ctacttcgtg cattgattga ccagggttct gaagcttctt      1680
     tcgtttctgc aagagtagtt gaccttttgg gtttatcaaa aacgaaaatt gacggtgtgg      1740
     tctctggagt gggagaagga aatcaaacac caataaaaca cttagttgat ctaacaatta      1800
     catcacgatt taatgcaaat gatgacattc aagttaaagc ttatgtgctg aagactatat      1860
     ctacaagatt accatcaaaa cacatcgcga ttaattgttc acagcttcaa acactaccat      1920
     tggctgaccc tacatataac acaccaggca gaatagatat actgcttggc tctgacatct      1980
     tttgtaaaat tatagaagaa ggtttactta agatgaatga aggagtagtg gcacagaaaa      2040
     catgtttggg gtggatactg tcaggtcaaa gagaaaacaa agtaacaatg aataacaaag      2100
     aacacaatat aacaacacta catatcacta gaatagttaa agaagacaat gatatattaa      2160
     gaaagttctg ggaaatagaa acagagccgt atacaaagaa gaaaatattt acaaaagaag      2220
     aagaaatgtg tgaaaaaata tataaaaata caacaaaaag ggatacagag ggaaaatata      2280
     ttgtgcacct gccgctgaag tgcagtactg gagaagcagt taatttatgt ggggatacaa      2340
     aagaacaagc gatacgaaga tttcaatgtt tagaaaggaa atttgtaaaa tctgaagtat      2400
     tgaaagccga atactcaaag gtcattaatg aatatatgga catgggtcac atgaagaaag      2460
     ttgaaacaac agacgataat aactcgattt acctaccaca tcacgccgta attcgtgaag      2520
     acaaggaaac tagcaaggta cgagtagttt atgatgcgtc tgcaaaggga tccaatggct      2580
     attctcttaa tgattgtatg atggtgggac cagtgttaca acctgatctc agaagtttga      2640
     tcacatcatg gagaactcat aaaatatgtg tagtaggaga cattgtcaaa atgtatcgaa      2700
     tgatcaacat gacacaggaa cacacaaact tacaacgtat catatggcgg gataatcctg      2760
     ataaagaagt tgaagcctat aacctaacaa ctgttacatt tggcactgct tcagctcctt      2820
     atctagcagt acgaacattg caacaactag ccgacgatga agcacatgaa tatcctgata      2880
     ttgcacctgt aataaaaaaa tgtttctaca tggatgattt aatgatagga aatgaaaatg      2940
     ttgaggaaac aaagaagatg tgtaatgaaa ttaagacagt attgaaaagg ggaggatttg      3000
     aaatgcaaaa atggtcaagt aattcagaag aaattatgga atatttacaa gaggaggaaa      3060
     caaaaaatac agtagaaata aaacttaata aaataataaa aatattaggt ttaacatggg      3120
     atagaaaaga tgatacattt aaaattacag taaacttacc tgaaatgaga tatcctatta      3180
     ctaagagatc tatactatct gatgttgccc gcttgtttga cccatttgga tggttatcac      3240
     cagttgttat aagtgcgaag attttaattc aaaaattgtg gctttgtagt ttagggtggg      3300
     atgatgaact accttctaac ttgaatgaag aatggattat ttacagagaa agattaatat      3360
     atttacaaaa cattaaagta cctcgatggt ttaaaaccac atcagagaat tataatcacg      3420
     ttacaatgca tggttttgct gacgcatcta cccaagcata tgctgctgtg gtttacttaa      3480
     gaattgaaga aggtgataaa gtacatgttg taatgattgc atctcgcact aaagttgccc      3540
     cattaaaaca attatcagtt cctaaattgg agctgtgtgg ctcagtccta cttgcaaatc      3600
     taattatcga tcttatggaa atattgaaaa ttcctaaaga aagagtattc gcctggactg      3660
     attcaacagt ggtactttca tggctgcaat cacatcctgg tcgttggcat acatttgttg      3720
     ctaatagaat agcggaaatc actcgagtaa tagacaacga caggtggaga catgttcagt      3780
     ctgctgataa cccagctgac atcgcaacga gaggcattgc agcatgcgat ctagctagtc      3840
     atgaaaattg gtggagtgga ccgaagtggc ttaagaaaga catgtctacc tttataataa      3900
     atagagaaga tataccagag acacaattag aattgaagat taaatgtaat tttatagtag      3960
     acgaaaaacc aatttgggaa agattttcaa caatatctag aatgaagaga gttttagcat      4020
     attgcaaaag aatttttaag aaagaaaaaa tagaacataa agaaaaatat ttacatgcag      4080
     tagagatgca gaatatatta gaagaatgta taaggtatta tcaaaattta gtatatgaaa      4140
     aggaaatcca agaaatcaag aaagatggaa aagtaaaggt tagaagttct cttatcagtc      4200
     tttcaccgtt cttagatgaa aaagggatcc tcagagtagg tggtaggctt aaaaatgcat      4260
     caatcccaga attaacaaaa catccgatta taatacctgc aaatcaacac ataactaaaa      4320
     tgttagtaaa cgaagctcac actagaacac ttcatggggg gattcaatta atgatgtcgt      4380
     atttgagatc agcttactgg atagtggggt taaaatcttt tgtcaaaaaa tgtattcgta      4440
     gttgtaaaac gtgtattgtg gataaggcta aaacaaaata tcaactgatg ggtaacttac      4500
     cggcagtaag agtaaatcaa catagagcat ttttaaatag tggagttgat ttcgctggac      4560
     cgataatgat cagaacatct aaaggtcgtg gacatcacac aagtaaaggt tatatttgct      4620
     tatttgtatg catggcaaca cgtgccatac atttggaagc ggttacagat ctcacttctc      4680
     aagcattcat tgcagcattt cggagattcg tggctcgcag agggtattgt cgtcatctgt      4740
     ggagtgacaa tggcactaac tttgtgggtg ctgccaaaga tttgaaagac ttgtttcaaa      4800
     ctagcaagaa tagtatggtt aaggaagtgt ctgaaattct agccaatgat ggaacaacat      4860
     ggcactttat accaccgaga atgcctacgt gtggtggttt atgggaggct ggtgtccagt      4920
     cagcgaaaaa acacttagta aggataaata aaaacaccaa attgacctat gaggaaatgg      4980
     ccactttgct ggcacagatt gaggcatgtc tcaactcacg ccctctctgt caaatagaca      5040
     acacgacaga agaagtgctt acaccaggtc attttctagt gggcgagcct ttagttagcg      5100
     ttccagatat atgttatgag aacaagaata tcaacttgtt aaccaggtgg cagtttatac      5160
     agaaattaac acaacatttt tggcataaat ggaaaactga gtatcttaac accttgcagc      5220
     aaaggcataa gtggcaaaag atacactcat cacccactgt aggagatatt gtggttgtaa      5280
     aagatgagat tgtgccccct acaaaatggt tgctaggacg aattaaacag ctgcaccctg      5340
     gaacagatga cattgtaaga gttgtcacag tacaatgcaa gggagatcat gagataaaaa      5400
     gaccattgta taaattaata ccacttccaa aggatcttga ataaatatat catggtgggc      5460
     ggtgttaagt gtaaatgtgc atgtgataaa acaataaagg caaataaggt gttatagtta      5520
     ataatataaa tgtaaaaatc aaagcatgca aaaataaaat ataataaaaa aggtgttgaa      5580
     tattgtaaaa tgtaaaggtt gaaaaatgta aagtaaagta aaatgtaaaa tctttaaaaa      5640
     ctttaaatta gaaattgaaa acaaaaaaat acagtccaca cagaaggtaa ctaataataa      5700
     ttaatcatga ataataagga aagaagaaat aagaaagtaa atagtataag aaagtgtata      5760
     actcgcaatt tcataattta aagttgtata atatttgtta aaaaactgtt gtttttggtg      5820
     ggcggta                                                                5827
//
ID   BEL-2_HMM-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   CAEZ01008606;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_HMM_;
KW   BEL-2_HMM-I; BEL-2_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-136
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01008606; Positions   13520   13655.
XX
SQ   Sequence 136 BP; 51 A; 24 C; 19 G; 42 T; 0 other;
     tgtctgatcg tttttaacat attagtgtat agcagtcagt acaaaataaa tcatcacaga        60
     gagcacacgt tttttattat tcaccgtcca tacaattaca aggaccattg aaattgaaac       120
     tttaaggata caaaca                                                       136
//
ID   BEL-2_LH-I  repbase;    DNA;    INV; 5493 BP.
XX
AC   ADOQ01000830;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_LH_;
KW   BEL-2_LH-LTR; BEL-2_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5493
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000830; Positions   10843   16335.
XX
CC   Positions [4537-5106] - Integrase core
CC   'ATGAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(496..3105,3109..5451)
FT                 /product="BEL-2_LH-I_1p"
FT                 /translation="MISTLQTNAMPQERRVHTLNQPINIIQQNKMRLPTIE
FT                 IPKFDGRWEEWLPFRDTFTSMIHDNEALPAIDKLHYLRWSLVGDAYKLIES
FT                 LEVINENYQIAWEIVNKRYKGNKTIIQNHVQALINFPCISKESHSSLRQIV
FT                 DTILQHLRTLKRLEQPTDSWDTLLIQLFIPKLDSHTRREWESERADKEELP
FT                 SMENFINFLETRCSFLEALARASTLNLSKTVQSHLKQHTVKQPNQLQAHVS
FT                 VEGSTCPVCQNTHRIFECLIFRNMTIQARLEKVKSNKLCYNCLKPFHGKKC
FT                 TLGSCRKCHKHHNTLLHVNKAADSNDSSQGAEANRNVTKQYASSSAIESNS
FT                 TSASNASDTQSVNSLSSCHTQGSFSHVLLSTAIIHIRDYSNKLHNCRVLLD
FT                 SGSQPNFISLELCERLKLPQRNTDIIIDGVNNVASTSERETTATIHSRFNN
FT                 YQETLSFIIVSKVTNKIPAITVDVSSFQIPSYIKLADPTFHLPGKIDMILG
FT                 SEIFWKLLCIGQISIGKEKPIFQKTRLGWVVSGTANANLKPEQVVQCHLAQ
FT                 QSMLHNQLEKFWQLEELQTTSHLSANEQKCKEHFQKTHSRQNDGRFVVMIP
FT                 LKDNYAQLGESYETARRRFFSVERRMSKQPKLKEQYTTFMQEYVDLGHMKH
FT                 VSNPVNDHLQTKDYSISYYLPHHAVLKPDSDTTRLRVVFDASAKTSSGLSL
FT                 NDVQMVGPTIQQDLFNIIMRFRQHTYAVSADISKMYRQVRISQEQCKLQRI
FT                 LWRFTPEEEIQTYELQTVTYGEAWSAFLAIRSLHQAARDLQQQYPEAAQII
FT                 MRDFYVDDLLTGGNNINDLLQRKKDITTILQSAKFELHKWKSNHPLLSLYQ
FT                 VDSTVRLGEDTKILGQLDTQQDMLSYTTRATKPLKGSTKRQMLSCIAQIFD
FT                 PLGLLGPVILTPKVIMQQLWQVKLDWDESLPAQLHTQWAKWYGKLSHLNYL
FT                 KIPRRVLYDDSKHVELHGFCDASERAYGACIYIRSTNSTQDNHVRLLCAKS
FT                 RIAPLKVISLPRLELCGALLLSRLYQRVTESLTVDFNSAHFWCDSTIAISW
FT                 IAGDPSRWSIFVANRVAEIQKLTAKKQWHHVRSELNPADILSRGTNPDEIQ
FT                 TNKLWWNGPSFLQGDYYEILNSSAPFPLSEELPEIRKRTIALMATSTEGAS
FT                 IINKFSSLAKLRRVIAYCLRFICNSRKKVKNRDDYNIGPLLVEELEYSMLA
FT                 LLGIAQREEYPEEIRQLSQGQELHSKSKLLSLRPFLDTRGLLRVGGRLQEA
FT                 QLDYDQRHPIILPKGQHLTHLIIMETHLKNLHAGVQLLLVLIRTRYWPISG
FT                 KNIIRKVLHKCIVCCKFRASPAEQLMGALPASRVLPLPPFSKSGVDYAGLF
FT                 AIKISRNKTGKAYLCVFVCFLTKAVHLEIVSDLTASAFLNALKRFIARRGK
FT                 CTSIYSDNGTNFVGANKALKEMYLLVKASDVKIHDFLTEQAIKWHFLPPQL
FT                 PHMGGLWESAVKPVKIRLTKIVGPTPLTFEELATVVTQIEAILNSRPLTPM
FT                 SADPDDLEALTPGHFLIGRPLVAICEPDVADIKVNRLNRYQLMEQMRQSFW
FT                 KRWSIEYLTQMQQRHKWKRRHEPISNGTMVVLREQNIPPMSWRLGRVVKVH
FT                 PGKDGLIRVVDVRTSSGTYQRPLNKICVLPIHE"
XX
SQ   Sequence 5493 BP; 1799 A; 1223 C; 1090 G; 1381 T; 0 other;
     aatggtcctt cgagccggat cggcaacaat aacctatgga tccggaacac acaaactaaa        60
     cacacaacga gctaagtaca agcaaagata tacacactaa caataagtta ggtcgtttta       120
     attcttttct ttacacagag aaagcatccg tcatattttt ccatattgaa tcgtagacac       180
     gagatttcac ggccttcgta gaataatttt cggttacgtt ttcttaacct caaaatggcg       240
     gaacaaatac taattaagaa aagaagtcat attaaagcta agttgacttg attcattaat       300
     tttctaaacg attgtattga tgatgagcaa aaaagacaag aaacggcatc gcgcttggaa       360
     aaaattgagt caatatggaa ggattttgac gcggtacaaa ccgagctgga agatctcaat       420
     gaaattgaac ttgagagtgg agaacgtgat acctttgaaa acaaatttca ccgttcagtc       480
     actacagcca gaaacatgat ttcaacatta caaacaaacg ctatgccaca ggaacgacga       540
     gttcacacat taaatcaacc tataaatata attcagcaaa acaaaatgcg tcttcctact       600
     atcgaaattc ccaaatttga cggtagatgg gaagaatggc tgccatttcg tgatactttc       660
     acctccatga ttcacgacaa tgaagcacta cccgccatag ataaattgca ttatctgaga       720
     tggtcattag taggcgatgc atacaaactc attgaatcgt tggaggtgat aaatgaaaat       780
     tatcaaatcg cctgggaaat cgtaaacaaa cgatacaagg gcaataaaac aatcattcaa       840
     aatcacgttc aggcattaat aaactttcca tgcatttcaa aggaatcaca ttcttctctc       900
     agacaaatag tcgatacaat attgcaacac ttgcgcacat taaaacggct agaacaaccc       960
     acagacagtt gggatacgct actcattcaa ttattcattc caaaattaga tagccacact      1020
     agaagggaat gggagtccga aagagcagat aaagaagaac ttccaagcat ggagaacttt      1080
     atcaattttt tggaaacaag atgctccttc ttagaggcct tagcgcgcgc tagcacactt      1140
     aatctatcca aaactgtaca gagtcatttg aaacagcaca cggttaaaca acccaatcaa      1200
     ttacaagctc acgttagcgt agaaggttca acatgtccag tttgtcaaaa cactcacaga      1260
     atatttgaat gtcttatatt ccgaaacatg acaattcaag ctcgccttga gaaggtcaag      1320
     agcaacaaat tatgctataa ttgcttaaaa ccatttcacg gtaaaaaatg cactctagga      1380
     tcttgtagaa aatgccataa gcatcataat actttactgc atgtaaacaa ggctgccgat      1440
     tcgaatgact cttcccaagg ggctgaggca aacagaaatg taacaaaaca atacgcctca      1500
     agctccgcaa tagaatctaa cagcacaagc gcgtctaatg ccagcgatac acaatccgta      1560
     aattctctat cttcttgtca cacacagggt tcattctcgc acgtcttgtt gtcgacagca      1620
     ataattcaca ttcgagatta ttccaacaag ttgcacaact gcagagtctt attagattcg      1680
     ggctcacagc ccaatttcat ctcgctggaa ctatgcgaac gcttgaaatt gccccaacga      1740
     aatacagata ttatcataga tggagtcaat aacgtcgcat ccacgtctga aagggaaaca      1800
     accgctacga ttcattccag atttaacaac tatcaagaaa cattgtcatt catcatcgta      1860
     agcaaggtca ccaacaaaat tccagccata accgtggacg taagctcttt ccaaattcca      1920
     tcctacatca agctagcaga tcctacgttc cacctgccag gcaagataga catgattttg      1980
     ggctcagaaa ttttctggaa gctattgtgc attgggcaaa tttcaatagg caaggaaaaa      2040
     cccattttcc agaagaccag gctaggatgg gtagtatctg gaaccgcaaa tgcaaatctt      2100
     aagcctgaac aggtcgtaca atgccatctt gcccagcaat caatgttgca caatcagctg      2160
     gagaaattct ggcagcttga agagctacaa acgacatcac acctgtccgc gaatgaacag      2220
     aagtgtaaag aacatttcca aaaaacacac tcacgtcaga atgatggaag gtttgtcgtg      2280
     atgatccctc taaaggataa ttacgctcag ctaggtgagt cttacgaaac ggctagacgc      2340
     agattcttca gcgtagagag aaggatgtcc aagcaaccta aactcaagga gcaatacacg      2400
     actttcatgc aggaatatgt ggacctcgga cacatgaagc acgtttcgaa cccagtgaat      2460
     gatcacctgc aaacgaaaga ttatagcatt tcatattact tacctcacca tgctgttctc      2520
     aagcccgaca gtgatacaac acgcctgcga gtcgttttcg atgcgtcagc aaaaacaagt      2580
     tctgggctgt ccttaaatga cgttcaaatg gtagggccta ccattcaaca agatctattc      2640
     aacatcataa tgcgttttcg ccagcatact tacgccgtct ccgctgatat atcaaaaatg      2700
     taccgccaag taagaataag tcaagagcaa tgtaagttgc agcgcatact atggagattc      2760
     actccagaag aagaaataca gacctacgag ttgcaaaccg tcacttacgg agaagcttgg      2820
     tcagccttct tagctattcg ttcgctccat caggcagcaa gggacttaca gcagcaatat      2880
     ccagaagccg ctcaaataat catgcgcgat ttttatgtcg acgacctctt gaccggcggt      2940
     aacaacatca atgatctttt gcaacggaaa aaagacatta caactattct tcaatcagcc      3000
     aaattcgaac ttcacaagtg gaaatcaaat catcccttat taagccttta tcaggtcgat      3060
     tcaacagtac gattaggaga agacacgaag attcttgggc aattatgaga cactcagcaa      3120
     gacatgctaa gctatacgac cagagcaact aagccattaa aagggtcaac aaagagacaa      3180
     atgctatcct gtattgctca aatattcgac ccgctgggac ttctagggcc agtgattctt      3240
     acaccgaaag tgatcatgca acaactatgg caagtgaaat tagattggga cgaatcattg      3300
     cccgctcagc tccatactca atgggcaaaa tggtatggca agctttcaca tctaaattat      3360
     ctaaaaatac ctaggcgtgt attgtacgac gattcaaaac acgtagaatt gcacggcttt      3420
     tgtgatgcct ccgaacgcgc ctatggtgcc tgtatataca taagaagcac aaattctact      3480
     caggacaatc atgtcaggct attatgtgct aaatctcgca tagctcctct aaaggttata      3540
     tcactcccca ggctcgagct ttgcggtgcg ctgttgttat ctcggctata tcaacgggta      3600
     acagaatctt taacagtaga ttttaatagc gcacatttct ggtgtgattc cactatagca      3660
     atttcatgga tagcaggaga tcccagcaga tggtccatct ttgtcgccaa tcgagtagct      3720
     gagatccaga aattaacggc caagaagcaa tggcatcacg tgcgttctga actaaaccct      3780
     gcagacatcc tttcacgtgg aactaatcca gacgaaattc aaacaaacaa actttggtgg      3840
     aatggtcctt cttttttaca aggagactat tatgaaattc taaacagctc tgcaccattt      3900
     ccattgagcg aagaattacc tgaaataaga aagcgaacca ttgcgctgat ggcaacatct      3960
     acagaaggtg caagcatcat aaacaagttc tcatctttag ccaagctcag acgcgtaatt      4020
     gcatactgtt tgcgtttcat atgcaactca aggaagaagg taaagaatag agacgactat      4080
     aacatcgggc ccctactagt agaagaactc gagtacagta tgctcgcctt actaggcata      4140
     gcacaaaggg aagaataccc tgaagaaata cgtcagctgt cccaaggaca ggagctacat      4200
     tcgaaaagca aattactatc acttcgtcct tttttagaca ccagaggact acttcgcgtt      4260
     ggagggcgac tgcaagaagc tcagttggat tatgatcaaa ggcatccgat aattttacct      4320
     aaaggacaac acttaacaca cttgatcata atggagacac atttaaaaaa cttgcacgca      4380
     ggagtgcaac ttcttttggt tttaatacgt acacgctatt ggcccatatc aggaaaaaat      4440
     attattagaa aggtactaca taaatgcata gtctgttgca agtttcgggc ttctcctgcc      4500
     gagcaattaa tgggcgcttt acctgcatca cgagttttgc ctttgccgcc cttttccaaa      4560
     agcggagtag actatgcagg gctttttgct atcaagatta gtcgcaacaa gacgggtaag      4620
     gcttacctgt gcgttttcgt atgttttctc acgaaggctg tccacttgga aattgtatcc      4680
     gacttaaccg catctgcgtt tttgaatgca ttaaaaagat tcatagctag gcgcggtaaa      4740
     tgcacgtcca tttattccga caatggaact aatttcgtag gagcaaataa ggcgctaaaa      4800
     gaaatgtatt tgttagttaa agcaagcgac gttaagattc atgatttttt aacagaacaa      4860
     gccattaaat ggcacttcct tccgcctcag ttgcctcaca tggggggtct atgggaatcc      4920
     gcggtcaagc cggtaaaaat tcgactgaca aaaattgtag gacccacccc actaactttc      4980
     gaagaattgg cgaccgtggt tactcaaata gaggctatat taaactcaag gccgcttaca      5040
     cccatgtcgg cggatcctga tgatcttgaa gccttgaccc caggccattt cctgattggt      5100
     cgtccactag tcgcgatctg cgaacccgac gttgcggata tcaaggtgaa ccgtctcaat      5160
     cgatatcaac tcatggagca aatgagacaa agcttctgga agcgttggtc gattgaatat      5220
     ctaacgcaaa tgcagcagag acataaatgg aaaagacgtc atgagccgat aagcaacggt      5280
     actatggtag tcctgcgtga gcaaaacatt ccgcctatga gttggcgttt aggccgagtg      5340
     gtaaaggtgc atcctggcaa ggatggttta atcagagtag tagacgtacg aactagctcc      5400
     ggcacgtatc agcgtccatt aaataagatt tgtgttttgc ccatccacga atagattaac      5460
     tttgaaagca cgatctttca aggccggcgg tat                                   5493
//
ID   BEL-2_LH-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   ADOQ01000830;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_LH_;
KW   BEL-2_LH-I; BEL-2_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-400
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000830; Positions   10443   10842.
XX
SQ   Sequence 400 BP; 124 A; 62 C; 75 G; 139 T; 0 other;
     tgtttagtgt tattatgcat tctaatttta ataagtgtat ttgtttgatg caatatcgat        60
     aatttacctt actttatttc acatagttat gcgcgtattc aattatattc aaggcatgtg       120
     tattattttt atttgtactg cgcgcgctgt ttgtttatgc atttttggcc cgaatggtgt       180
     cgccacaaaa gagattggtg tgtgtggagg ggatacacca cacgcaaggt cgaagaaaaa       240
     acgcctggtt gacacacgtg gcgttaagat ataatacagt tacgttatta ttttttatcc       300
     tgtactatga acacatcgca ataaaactta caaggaaaaa acagtgatta ttaagcctat       360
     taactaggaa atatataata ccgctcacaa ggtattaaca                             400
//
ID   BEL-2_LMi-I repbase;    DNA;    INV; 5865 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5865
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3071-3071 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1853..2554,2481..2756,2849..3109,3177..4127)
FT                 /product="BEL-2_LMi-I_1p"
FT                 /translation="MDVYAKILTGKVVKLKNGLTAVETQLGWTLAGERLDQ
FT                 SVNVSLSNLTISMACDDAQTISQLWDLETIGICDPVEDKTNEEVKQDFLST
FT                 LKRDDSGRYIVKLPWKKGHPEINCNKHIAEKRLESTTDKLKKANLYTSYDE
FT                 IFNDWKKEGFIEEVPDEELERRCHYLPHRPVIKLTSLTTPVRPVFDASCKT
FT                 EESVSLNDCLEKGPNHVQLIPEILLRFRENAIGVSSDIRKAFQCSQRYFSD
FT                 FERMQLEFLQTSEKPSNVRLRQKTGFLRFLGGRMAMEENESFRHSRVVFGT
FT                 TCSPFILGAVIEHHLPMSVKKTSNSAKIDGVHVCELGIFDRKISLREDCET
FT                 EKRNITKVLGLQWNRRSDTLSVEFNTDFPALPEVVTKRILLSFVQKIFDVI
FT                 GFLTPVLLLLNCYCRKHGAISQTLSGNKLLKGVEVPRLVTGGVKERSQWTL
FT                 HTFVDASXHAYAVVTFLRTESDLGVSVQLLLAKARVAPLKNITIPRLELLG
FT                 CLVXSRLVSSVKLALHIQNVREYFWSDSSTALAWIRRDEPWATFVSNRVKE
FT                 IRSLTCPEDWRHIPGLHNPADLISRGCYPTQLNDLEWWKGPEWLKQPEEEW
FT                 PFNQLENNENETTILAERKKTVDYMVTMPSLEMTRNWSFSQRVRVVAWILR
FT                 FCRNARKTNSHTGPLHYSEVKAAELVVIKGTQSDSFPAEGDNVNGIKVVRD
FT                 EEGLIRVKTKIVMREDLMNFRYPLLLPKKL"
XX
SQ   Sequence 5865 BP; 1892 A; 1095 C; 1342 G; 1527 T; 9 other;
     ttttgtggtg actcccgacg tgatcagatg ccgtatattt attcctatac tcgaagagac        60
     ggaatttgaa gtacaataac acatwgtaca gcaktagtat ttcttccaag acgagaagaa       120
     tagctatgga gaaattgaag aaaggtagga cggctgcgag aaaatgcttc acaaagaaga       180
     taaacgatat aaaaggaatt ttcgcaacag gtacgtctcc cgattttaat gatgcactta       240
     cgtcaaattt cagtcgttta gaggcattga tgtcagagct tcatgaatta gataacaaaa       300
     tcatggatgc acttttaata gcagtgatga tatgactgta attgaatcag aaaaggaaac       360
     ttcggagaag tacaatgacg aatttgagat tatacgcgta caggtgaata atgctttgac       420
     gccatgtaca tctgacaatt ctttaagtga cgtacaagaa gggaccgcat gtcacagtca       480
     ggataggcag agaacctata aacttcctaa gattgaaatt aagaaattca atggtgattt       540
     actggagtgg ttaagttttt ggtcacagtt tcagaagatt cacaaagacg atagtttgcg       600
     atggtagtga caaatttcag tatctttcgc aagccatgga aacaggaact gaaccttacg       660
     aaattgtgtc agaaaattac ccgaaagtca ttcaaacttt gcaagaatgg tttggaagag       720
     cggatcttct attacaagtg tacataagag aattattgaa gttagtgatt tctaatgcac       780
     acaagaggat aagcttccat tacccacttg ttaatcaaat tagtcacatc ttcgatctct       840
     caacagtttg aatctagcat ctgcagaccc aagtacatgg cttttccaca gtcgaatcta       900
     gcatcccaga agagacactg cgaacttggc agagaggtca gttatcgaaa cagaaaaagt       960
     acaaacagag aaactggctc tcgacttgag tgcctaagaa tttctagtac tgaagtccaa      1020
     aatgaacagc agattctatt ggcacagtca ggatttagta tttggctgtg aaaagtaaga      1080
     atgagaagtt aggttcttcc agactgagaa aaaacataat aaagaatatg tagataaatc      1140
     cgttcccact gttgctgcac ttcacaacag cactacattg tcatgcattt tctgtagtaa      1200
     atgtcatgaa agtgataaat gttctcgtgc caggaaatga gtatagaaga aaggagatca      1260
     aaaatgaaag aaaaaggtcg ctgctatttt gtttaagacc caaccactta gctaagaact      1320
     gcaagtcttc catacactgc actttgtgga agccagtacc gttatgtgtc cagatcatca      1380
     cgaactgaaa gagtgaatca aagattgaga aagaaattca gcaaacccaa gtcacatccg      1440
     actactaacc atacttgtat tgatcaagtt gtcctacaaa cattgatggt ctattacagg      1500
     gaatggaaac agaaaaagtt cgagcatttt tagactgtgc tcacaacgaa gctacctcct      1560
     tcagagtaca gttgaagagt tgagactaga accttgtgca gaagaaatag tatcccatgt      1620
     tttgtttggt ggaaaccata cttctagcat taaacacaag agatataaaa ttaacatagg      1680
     aagaaatgat ggacaattca gttgtgaaat agagttaagg gatcatccta gaatttgtca      1740
     atcgatccca cgagtgtcaa gatcttcaga tttgctgcaa gagttgaaaa ggaagaagat      1800
     ttggatcagt gacctggggg atgatttccc cgagattgaa ctcctcatag gaatggatgt      1860
     atatgccaag atactcacag gaaaggtggt taagttgaag aatggactta cagcagtgga      1920
     aacacaactt ggatggactt tggctggaga gaggttagat caatctgtta atgttagtct      1980
     aagtaacctc accatctcaa tggcttgtga cgatgcacaa acgatatctc agctttggga      2040
     cctagagact attggtatct gtgatccggt agaagacaaa acaaatgaag aggtcaaaca      2100
     ggatttcctc agcacattga aaagagatga cagtggccgc tacatagtaa aactcccatg      2160
     gaaaaaaggt caccctgaga tcaattgcaa taagcacatt gcagagaaga gacttgagtc      2220
     tacaactgac aagctaaaga aggcaaatct gtacacgagt tacgatgaga ttttcaatga      2280
     ctggaagaaa gaagggttca tagaagaggt accggatgaa gaattggaaa gacggtgcca      2340
     ttatcttcct catcgaccag taattaaatt aacaagcctg acaactccag ttcgtccagt      2400
     atttgacgct tcctgcaaga cagaagaaag tgtttcattg aatgactgcc tagagaaggg      2460
     acccaatcat gttcagttaa tcccagagat acttctcaga tttcgagaga atgcaattgg      2520
     agtttcttca gacatccgaa aagccttcca atgttaggtt gcgacaaaag acgggatttt      2580
     tgcgtttcct tggtgggaga atggcaatgg aagaaaatga aagtttcaga cactcgcggg      2640
     ttgtttttgg aactacctgc agcccgttta tcttaggtgc tgtaatagaa caccatctac      2700
     caatgtccgt gaagaagaca agtaacagcg caaaaattga tggagtccat gtatgttgac      2760
     aactgtgtga catcggttga ttcaagggaa caatttgata cgtttcaaac tgtgttaaac      2820
     taatgaatga tgcaaaagtg gaacttagga attgggaata ttcgacagaa aaatctcact      2880
     gagggaggat tgtgaaacag agaagagaaa catcacaaag gttctcggac tacagtggaa      2940
     cagaagatca gacacgctga gtgttgaatt taatacagac tttccagctc tccctgaagt      3000
     agtgacgaag agaatcctac tttcctttgt acagaagatt tttgatgtca ttgggtttct      3060
     cacaccagta cttctccttt taaattgtta ttgcagaaag catggagcat aggaagcgaa      3120
     accaagaagg tcaaactgaa gtgggactcg ccgttacctg agagtattga taatgaattt      3180
     cgcaaacgtt atcaggaaat aaactgctta agggagtgga agtccctcga ttagtcacgg      3240
     gaggtgtgaa ggaaaggagc caatggacac ttcatacctt cgtagatgct agcmaacacg      3300
     cttatgctgt tgtgaccttt ttgagaactg agagtgattt gggagtttca gtgcaactac      3360
     ttttagctaa agcccgagtg gcccctctca agaacatcac cattcccagg ctggagttat      3420
     taggttgtct agttgkaagt agacttgtat catcagttaa gttggctcta catatacaaa      3480
     atgtaagaga atatttctgg agtgactctt caaccgcatt agcttggata agaagagatg      3540
     aaccatgggc tacatttgtt agcaacaggg taaaagagat cagaagttta acatgtccag      3600
     aggactggag acatattccg ggactacaca atccagctga tctcatatca agaggatgtt      3660
     atccgaccca actgaacgac ttggaatggt ggaaaggtcc agaatggtta aaacaaccag      3720
     aagaagagtg gccatttaat cagctagaaa acaatgagaa cgaaaccaca attttagcag      3780
     aaaggaagaa gacagtggac tacatggtga caatgccgag tctggaaatg acaagaaatt      3840
     ggagcttttc tcaacgagta agggttgtgg cttggattct tagattttgc aggaatgcaa      3900
     ggaagactaa ctcacataca ggccccttac attattcaga agtaaaggca gcagagctgg      3960
     ttgtcatcaa aggcactcag tctgattcat tcccagctga aggtgataat gttaatggga      4020
     taaaagttgt aagagacgag gaaggtctca tccgagtgaa gacaaagatt gtgatgagag      4080
     aggatctaat gaactttaga tatccattgt tgttgcctaa gaaactatga aatagttgag      4140
     gcaatgatta tggaaaacat caacttcatt gtcatctgtg tgcagttctt aataacctgt      4200
     ttgaggaaaa gtgttggata atacaaacca ggaggcggtg aagaaggtga tagcaaatgt      4260
     ctgcgatgta agcgtcacaa acgaagaatg ctgaaacaag tcagctcctc tacctaaaga      4320
     tcgcgtaaag gatgccaatg ttttcgagtg gttggtattg atgtgacagg accactaatt      4380
     ccaagktatg gattgttcta tacacctgtg ccatttatcg agcaatccat ctagaactgg      4440
     tttcatcatt aagtactgaa gcgtttattc ttccgctgag magatttatt gctaagggga      4500
     catccatcca ttatctactc ggacaamggt actaattttg ttggagcttc caatgcattg      4560
     aaaagmctat akctccaaga acttcaacaa caatctaggt ttcaagagat agagtggaag      4620
     ttcaatcccc tactgcgagt tgggatgggg gtgggaatgt ctgatccttt ccattaaaga      4680
     attagtgaga cgaatgctcg gaagatcagt actcacttat gaagaactgt taacttagct      4740
     ttctgacata aaggctgtga tcaatagacg cacactaact catgtatcag aggatcctga      4800
     ggatttgagt ctttagaaac catcaatgtt tgaaacttcc tggcagatta aaagtgtgtg      4860
     ccggaaacgg gactcgaacc tggcaccttt gccgttcgcg ggcaagcgct ctaccgactg      4920
     aactatcccg acacgactca ggatgccgcc tcacaacttc acttccgcca gtaccccgcc      4980
     tcctacattc caaacttcac ggaagctttc ctgcgaaaca tgcaagacta gcactcctgg      5040
     aagaaaagat atggtggaga catggcttag ccacagccta agggatgttt ccagaatgaa      5100
     acttccactc tgcaacggag tgtgcgctga tatgaaactt cctggccgct aaaattgtgt      5160
     ctggaaccta gaacctttgc ctttcttcca ggagtgctag tcttgcatcg tgagtcgtgt      5220
     ctggatagct cagtcggtag agcgcttgcc cgcgaaaggc aaaggtccca ggttcgagtc      5280
     acggttccag cacacaattt taatctgcca ggaagtttca tatcaacgca cactccgctg      5340
     cagagtgaaa gtttgtctgt taccatcaat gtttcttgac gatgctggag agaattttgt      5400
     gcaagatatt gatcatcttc agaaggagaa gttccagtca tgccttcgtt ccagacaaca      5460
     cctgatgcaa gaactgaaac aacgcttcag gaaggagtat ttgtcctagc tgatccagcg      5520
     ccctaaaggg aaagaaacat tgacaggacg gtgatgtggt tctagttggt tccgagcacc      5580
     aatagagagt ggagtggcca ttggcaagaa taatgtcaat ctttcctggc aaggtgaaag      5640
     gttggacacc gataacacct attgaacgac tgtatccttt ggaggtagac acctgtgaag      5700
     accccttagt tttcagtgcc caagggtaca gaacccgcag tggtcgcaga ttggttccca      5760
     atccaaaata ctcttctgaa taaatatcct gtgatatttg taggcataag ttatgtgtga      5820
     cattttgtga ctgaaattgt ttgcacaatt tcagggtggt aggaa                      5865
//
ID   BEL-2_LMi-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-204
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3072-3072 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 204 BP; 56 A; 20 C; 46 G; 80 T; 2 other;
     tgttgagaat ttaaagtttg ccaaagataa aatatgtgcg ttgtttgtac taggtagttt        60
     gtttacgtgt atgttagcac tatggttacg gtcaattagt gatctatgga gtacgtcctt       120
     cttgacakgt gtgtattgtg tgttattgtg mgtttattaa atgaattgca aaatatatgg       180
     cgtcatattg attagattac aaca                                              204
//
ID   BEL-2_MoPha-I repbase;    DNA;    INV; 5353 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5353
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1129-1129 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..1421
FT                 /product="BEL-2_MoPha-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MRLSHVQAHIEQQFILSKFITKAYDSFVGDGLSDVTT
FT                 NRVKSRLSTLKDDWERFCLEHKAILVAMHELNDDDRLVIQSHVYFTTNLYS
FT                 QTHEYYVNVVDKINSLLESEQEGVPSTPSTQVASFSSPEIPAFFHHARLPR
FT                 LDLPKFNGTPSDWLSFKDLFQSLVISNPTLSSVEKLQYLIISLTGSAASIL
FT                 KNTTLSAENFQRSWDALNSFYENKRLLVHAAMNSLFSIKRMTKESAVELKK
FT                 LYTQVMQIYRNFESLERPVSTWDDFLIFVVVQRLDSESVKAWEKQLGSSKE
FT                 PPTWQQFSEFLISQLLTLQAFENSRSGLLPLQPNSKAVKSHYQGKSTENKV
FT                 NSSFICPICSSNHYVSKCLQYTSKSVPQKVALINKHKLCFNCLGTHRVSAC
FT                 QITKRCQKCGRRHHTSIHKEYNKFNSSKHDTTKKSVESSDSSTPSISSEAQ
FT                 TLHSS"
FT   CDS           1425..5312
FT                 /product="BEL-2_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="LNNNIPCVLLATARVLVISPTKETFEIRALLDQGSEI
FT                 SLISERIVQQLRLPRNHSSISLVGIGAQHSNKTKGVTTIKLRDRFNKFDFS
FT                 IQAHILRKLTTSIPSTQINKPIWPHLKGLQLADPNFLSPRSIDLILGADIY
FT                 GHIIENKVIKGPPHSPTAQFTKLGWIVSGPTDTNVSSNTSHSYHVSVDDEL
FT                 YRLLHRFWEIDEIPSVNTSSLSSADQECENHFVSTHSRDAHGRYIVKLPFK
FT                 RSPDQLGNSRNKAVRLSTNLSNKFSTNSVYAQLYSKFMSEYESLEHMQIVP
FT                 ESQPEPQPVYYLPHHGVMREHSLTTKLRVVFNGSSRTTSGVSLNDLLHTGA
FT                 KLQTNLFDVLVWFRKFHCVFVSDMEKMYRQIKVHPEDWKFQRILWFNQSNC
FT                 LRTYELTTVTYGLACAPFLALRTLLQLIEDEGQNFPRAIPSLTKGRYVDDV
FT                 FGGADSIDEVQPIITQLNQLCMAGGFTLRKWISNYPSILKDIPTEHQTNLT
FT                 SLEFKDSTVFNALGLCWQPAIDAFQFTLKLPSTKHITKRSILSTISTLFDP
FT                 LGLLSPITIKAKILIQELWAIKLDWDDHLPMMVTNKWTTFLNTLQEMTHLT
FT                 FPRWLGCKSTDKIEIHGFCDASQQAAAAAVYLRSTDSNGIISINLVASKTK
FT                 VAPLKKLTIPRLELSGAVLLVKLSSHILKVLEIGNIPIYLWTDSAITYTWI
FT                 NNHPSRWKEFVHNRVCYIQETLPSARWKFVPGNENPADLATRGLTPIQLSE
FT                 HPTWWTGPPWLSQNSSKWPQPPKALSVNENLEERPVKIFTTNLTPPPLWDL
FT                 VHKYSTVMKLFRITAICQRVLARMRKHPQSSLTIPLTTQEIDNARFFWIKH
FT                 IQNSSFGQEKRLLSSGQSLPKSHSLARLTPFLDATGLLRIGGRLQASLLPP
FT                 NAKHPLILPRKSPLTSLIILDSHLRTMHGGTQLTLNYIRNNYWIVGGRAPI
FT                 RSFILKCVKCTRYRQSRAQQLMGQLPSERITPSRPFLHSGVDYAGPFTIKT
FT                 WKGKNAKTYKAYMVLFVCFSTSAIHLELVTDYTTEAFIGAYKRFTSRRGIC
FT                 ATLTSDCGTNFTGADCELKRLFSSSTKELGELASVLANDGTQWKFHPPAAP
FT                 HFGGKWEAGVKSVKYHLKRVVGDTLLTFEEMNTLLTQIEAVLNSRPLSPLT
FT                 DDPDDLQALTPGHFLVGNAPSVIPEPSLETVKSSRLSRWQLTRQMLDSFWS
FT                 RWSRECLQRYYSIHKWNQPSPSLSNGSLVLVIDERYPPSKWPLGRIIQTHP
FT                 GPDGLVRVVSIRTQKSILKRPIAKLCPLPINNDSL"
XX
SQ   Sequence 5353 BP; 1609 A; 1220 C; 958 G; 1566 T; 0 other;
     ttttttggtc cttcgagccg gatatatata aaaaaaaaaa aaaaagagaa gagaacggag        60
     aattattgaa gatgaggctc agccacgtgc aagctcacat tgagcaacag tttattttat       120
     ctaaattcat aacgaaggca tatgatagtt ttgttggtga cggattgtca gatgttacta       180
     cgaatagagt aaagtctcgc ttgtcgacct tgaaagatga ctgggagcgt ttctgcttgg       240
     aacacaaggc aatattagta gcaatgcacg aattaaatga cgatgatcgt cttgttattc       300
     aaagtcacgt atattttact acaaatcttt attctcaaac tcatgaatat tacgttaatg       360
     tagttgacaa aataaattct ttactcgagt ctgagcagga aggcgttcct agtacaccgt       420
     ctactcaggt cgcatcattc tcctctcctg aaattccggc attctttcat catgcgcgtc       480
     tcccacgact tgatctccca aaatttaacg gaactccgtc ggattggctt tcatttaaag       540
     atttatttca atcgcttgtt atttcaaatc cgacattgtc atccgtagaa aagcttcagt       600
     atttgataat cagtctcact ggctccgccg cctcaatatt aaaaaataca acgttatcag       660
     ctgaaaattt tcagagatca tgggatgcac taaattcatt ttatgaaaat aaacgtcttc       720
     tcgttcacgc agcaatgaat tcattgtttt caatcaagcg catgacgaaa gaatctgccg       780
     tggaactaaa gaaattatat acacaagtta tgcaaattta ccgaaatttc gaaagtttag       840
     aacgccctgt ctcgacatgg gatgattttc ttatttttgt cgtggtgcaa cgtctcgatt       900
     ccgaatctgt taaggcttgg gagaaacaat taggatcatc caaggagccg cctacttggc       960
     aacaatttag tgaatttctc atttctcaat tgttaactct tcaagcattt gaaaattctc      1020
     gatctggttt actcccacta cagccaaatt caaaagcagt caaatctcat tatcaaggaa      1080
     agtcaaccga aaataaagta aatagttcat tcatctgccc tatctgctca tcaaatcatt      1140
     atgtatctaa atgtttacag tacacttcga aatctgttcc gcaaaaagtc gcgcttatca      1200
     acaagcacaa attatgcttc aattgcttag gaacgcatcg agtctcggcc tgtcaaataa      1260
     caaagcgctg tcagaaatgc ggacggcgtc atcatacatc aattcataaa gaatataata      1320
     agtttaattc atctaaacac gacactacta aaaaatccgt cgaatcatcg gatagttcga      1380
     caccttcaat ttcctctgaa gctcagactc ttcattccag ttgactaaat aataacattc      1440
     cgtgtgttct tcttgctacg gcgagggtgc tggttatatc acctaccaaa gaaaccttcg      1500
     aaatccgagc cttacttgat caaggatcgg aaatctcttt gatttcagaa cgtatcgttc      1560
     agcaacttcg acttcctcga aatcactcat caatttcttt ggtaggaatc ggtgcacaac      1620
     attccaataa aactaagggt gtcacaacta ttaaattaag agatcgtttt aataagtttg      1680
     atttttcaat tcaagcacac attttacgta aacttactac atcaattcct tctactcaaa      1740
     ttaacaaacc aatatggccg cacctaaaag gactgcaatt ggcagatccg aattttcttt      1800
     cccctcggtc catcgattta attttaggcg ccgatatata tggacatatt attgaaaata      1860
     aagttatcaa gggaccccca cattcaccca ctgctcaatt cacaaaactt ggatggattg      1920
     tgtccggtcc aacagacact aacgtttcta gtaatacctc gcacagctac catgtatctg      1980
     tcgatgatga actttacaga ttattacatc gtttttggga aatagatgag attccttccg      2040
     taaacacttc atctttatct tccgctgatc aagagtgcga aaatcatttc gtatctacac      2100
     acagtcgaga cgctcatggt cgatacatcg ttaaactacc gttcaaacgg tctcctgatc      2160
     agttaggcaa ctcacgaaat aaggccgttc gattaagtac aaacttatcc aacaagtttt      2220
     caactaattc tgtttacgcc cagttatatt caaaattcat gtccgaatat gaaagcttag      2280
     aacacatgca aatagtccct gaatctcaac ctgaacctca acctgtgtat taccttcccc      2340
     atcatggagt tatgagagag cacagtctca ccaccaaact ccgggttgtt ttcaatggtt      2400
     ccagtcgaac tacctccggc gtatcgttaa atgatcttct tcacacagga gcaaaactcc      2460
     aaacaaatct atttgatgtt ctcgtgtggt tcaggaaatt tcattgtgtc tttgtctctg      2520
     atatggagaa gatgtacagg caaatcaagg ttcatccaga agattggaaa ttccaacgta      2580
     ttctgtggtt caatcagagc aactgtcttc gtacatatga actaactacc gtcacatatg      2640
     gactagcttg tgctcctttt ttggcacttc gtactttact tcaacttatt gaagacgaag      2700
     gtcaaaactt tcctcgtgcc attccatcgt tgacaaaagg gcgatatgtc gatgatgtat      2760
     ttggaggcgc agattccatc gacgaagttc aaccgatcat tactcaatta aatcaactct      2820
     gcatggcggg cggtttcact ctccgaaagt ggataagtaa ttatccttcc attcttaaag      2880
     acattccaac tgaacatcaa acgaacctta catcgctaga attcaaagat agtacagttt      2940
     ttaacgcatt aggattatgc tggcaaccag caattgatgc ctttcaattt accttaaaac      3000
     ttccttctac aaaacacatt acgaaacgat ctatcttgtc caccatttca acattgttcg      3060
     atcccctagg tttgctatct ccaatcacta ttaaagcaaa aatactcatt caagaattgt      3120
     gggccattaa actcgattgg gatgaccatc ttcctatgat ggtaaccaac aagtggacca      3180
     cgtttctcaa tactcttcaa gaaatgactc atctcacgtt tcctcgttgg cttggatgca      3240
     agtcaacgga taaaatcgaa attcatggtt tctgtgatgc ttcccaacaa gcagctgctg      3300
     ccgctgtata tcttagatct acagattcaa atggcatcat ttcaataaat cttgtggctt      3360
     caaagacaaa agtcgctcca ttaaagaaac ttacgatacc cagactcgaa ctttccggag      3420
     ctgttctgtt agtaaagtta agttcacaca tattgaaggt acttgaaatt ggaaatattc      3480
     ctatttatct gtggacggat tctgccatta catacacgtg gattaataat catccatctc      3540
     gatggaaaga attcgttcac aaccgagtgt gttacattca ggaaacctta ccttccgcac      3600
     gttggaaatt tgttccgggt aatgagaatc cggctgatct tgctacccga ggattgactc      3660
     ccattcaatt atcggaacac ccaacatggt ggaccggacc cccatggctg tcacaaaatt      3720
     cctcaaagtg gccacagcca cccaaggcac tttctgttaa cgaaaacctt gaagaacgtc      3780
     cagttaagat tttcacaact aatctcacgc ctccaccact ttgggatctt gttcataaat      3840
     attccacagt aatgaaattg ttccgcatta ctgccatttg tcagcgtgta cttgctcgaa      3900
     tgcgcaagca tccacaatca tcattaacaa tcccactaac cacacaagaa atagacaatg      3960
     cacgattttt ctggataaaa catattcaaa attcttcatt tggtcaagaa aaaagactcc      4020
     tttcgagcgg acaatcattg cctaaatctc attcacttgc tagactaact ccctttcttg      4080
     acgctaccgg attactacga ataggaggtc gccttcaggc ctcattatta cctccgaacg      4140
     caaaacatcc tctgattctt ccgagaaagt caccgttaac ctcgttgatt attttagact      4200
     cccatttacg aacaatgcat ggaggaacac aactcacgct taattatatc agaaacaact      4260
     attggatcgt tggagggcgg gctcctatac gctcttttat tttgaagtgt gtaaaatgca      4320
     ctcgatatcg acaaagtcga gctcaacaac taatgggaca acttccatct gaacgaatca      4380
     caccttcgcg tcctttcttg cactcaggcg ttgactatgc tggccctttc actataaaaa      4440
     cctggaaagg aaaaaatgcc aaaacgtata aggcatatat ggttttgttc gtttgttttt      4500
     cgacttcggc aattcatcta gaattggtca ctgattatac caccgaggca tttattggag      4560
     catataaacg tttcacctct cgaagaggaa tatgtgcgac gttgactagc gattgcggaa      4620
     caaatttcac aggagcagat tgcgaattga aaagattatt ttcttcctca acaaaggaac      4680
     taggcgagtt ggcatccgtc ctagcgaacg acggcactca atggaagttt catcctccgg      4740
     ctgctcctca ctttggagga aaatgggagg ctggagttaa gtccgtcaaa tatcatttaa      4800
     aacgcgtagt gggagataca ttgctcacgt ttgaggagat gaatacgttg ctaactcaaa      4860
     ttgaggcagt actcaattca cggcccttga gtcctcttac ggatgatcct gatgaccttc      4920
     aggccttgac tcctgggcac tttctcgtgg gaaatgcacc ttcagtcatt cccgaaccat      4980
     cgttggagac agtaaagtct tcacgacttt ctcgatggca attgacccgt caaatgttgg      5040
     atagtttctg gtcgcgatgg tccagggaat gtctgcagcg ctactattct attcataagt      5100
     ggaatcaacc atctccatct ctgtcaaatg gctcccttgt gctagtcatt gacgagcgct      5160
     accctccgtc taaatggcct ctagggcgca taattcaaac tcacccgggc cctgatggtc      5220
     ttgtacgagt cgtgtccatt cggacacaaa aatcaattct aaaacgacca attgcaaaac      5280
     tctgcccatt acctatcaac aatgatagtc tctaatttgt tcattaacgg aggttaatga      5340
     aggcgggcgg taa                                                         5353
//
ID   BEL-2_MoPha-LTR repbase;    DNA;    INV; 1335 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1335
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1148-1148 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1335 BP; 397 A; 240 C; 245 G; 453 T; 0 other;
     tgttcagaaa attaaaggac gcatatgcat gagaaggttt ctatgtagtt gtgtacattc        60
     gtacatgatt gataccgagg acgttgaccg actcctcgac gcgactcacg tctgatcttg       120
     ctttgtttga cccaatttct cttgacgacg ctacaaacag acagtcagat tttcattcat       180
     tctttctgag acgagcgtca gagtaagacg ttcattcaga ttacaataca cacgtattgt       240
     aaaggttttc gttacgtgcc acgtatctcg tgcaaattgg ttgcacattc aaagtagaga       300
     cttaccacgg ccaagtacac tgcataatca gtttctgcag accctacggg ttgctgaaag       360
     atagagttcg agttcaattc ctgcagtcac cacgacgagc agaaagagtg agagagaggg       420
     acattcgacc ctaaattcta cggcctatcg agagagtgag agagagggac attcgactct       480
     aaattctacg gcctgctgag agagagagac caggagatcg agctccaggt acacggaacc       540
     tctgtagaga gttttcaatt gagttcttga gaaagttttc atcctgtttc ggattagcac       600
     gacggcgaac cgacaggaca gaactcaatt cagaggttcc cattcagctg tactattcag       660
     caattattca gagacatttt cataccgtcg tactttcgaa cgtaatctat ttagatgcgt       720
     tcacatgttg gcgtcactat cagacgtcat tcaatcaact gtttagagac attttttgat       780
     aaatgttaaa catgtatgaa tcaaaagttt cagtgtaacc ttcttctgca tatgcgttaa       840
     ttacttgaaa tattgtaaat tcatttgaaa tactattgat gtaaaaatct agaatcactg       900
     taatgttccg taattctcat tacgcttatc attctcaact aattttatga ttcatttgta       960
     aatattacga ttataatatg attgcataaa gcttatggta tggaatgcat gattattaat      1020
     ttgaataacc gtttgacgtt attgtatgaa taattttata atttattaac cctagtaatt      1080
     tctgattgtt gtgtattctt atatgtattc tattctatat gtgtgtaatt ccatatgtgt      1140
     tatttactat atttgttgtg aacgtccgtc attaaccgaa ttgtcataaa gtaatcagaa      1200
     tattcataga ttattcagac ttgtcataga ttaaatttta tattctgcca aaattatttt      1260
     aaagttatta aatttttctg ccacctttat ttgactctgt aatcattttc aaccggcgtg      1320
     cttgtttatt aaaca                                                       1335
//
ID   BEL-2_PBa-I repbase;    DNA;    INV; 5465 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5465
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 671-671 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..1002
FT                 /product="BEL-2_PBa-I_1p"
FT                 /translation="MEDLLAQQRAIMRSIXRALDNFKKIGKSNYTVELVRH
FT                 RLSALKDXFSRCXQTHYQILAKAGKEFTTSEKYFTDDQFSSCEDAYYDASD
FT                 YMVKVLATLEPQHPSPNASGNVSQGQFNFSSKSVCKLPRINLPKFSGEYHE
FT                 WEAFRDHFNALIITNSELSDVARLQYLISCLKGSAQDLLKNLAITDANFKI
FT                 AWHLLVSRYDNPRRLIHEHLHSIHKLLPANSESPSELSILRDKTNTAIQAL
FT                 ASLNCHDIWDHWLVYFITSKLDKSTRKAWELHSGMKPSIHLTSS"
FT   CDS           join(954..2126,2113..3903,3902..5341)
FT                 /product="BEL-2_PBa-I_2p"
FT                 /translation="MGTSLGYETEYPSYKQLDSFLAARIRALENIFPESSV
FT                 SGKKTKKVFVQSHAANTTHAQCPICQQNHFLSACSKFKSKTVAQRRDLVKE
FT                 FHHCFNCLSAKHTKSKCTSKFSCRHCQQKHHTLLHEPSAQPASVESPSHPT
FT                 TSTSNEANSIVSNLLPKINRSNSQILLATAWIRVGSATGRCSTVRALLDQG
FT                 SIATLISENLAQRLRLKRERISVAISGIGDTATSARHSADIQVSSRSGNGP
FT                 AYSTNAIILKSLTKYAPRHDVDLSSFSHLRDLDLADPNPSSSSPIEIIVGA
FT                 DLYGNVLLPGLQSRSLSEPVAQNTIFGWIVSGPVSSHLSSSHISSIQVHSC
FT                 SEMHTLDKELRXSGKSKNFRGNRSLLRKKSNARITFSQLTLVMSKVDSARS
FT                 IHSSIAVQDASSVEYRRFSLFFVFMSFSTRRFETQPEVAKEYSAFMSEYES
FT                 LGHMVPVSDTETSRSQIIYIPHHAVIRNSSTTTRLRVMFNASSRTSNGFSL
FT                 NDHLLVGPRLQTDLTIIILRWRQYRYVYTADIAKMYRQILVDERDVDFQRI
FT                 LWRSDSSQNVQAYRLLTVTYGTACAPYLALRVLKQLALTDGASFPLAQSVL
FT                 QHNVYVDDCIFGADDKPMAKQTRDQLMKLLNLAGFNPRKWSSNCLDLLQDI
FT                 DSRDHGLSHSKSLESDDQFQVLGLKWHPPRDVFQFNVTLSNSLPSTKRTIL
FT                 SAISKLFDPMGWLTPIIITAKILMQRLWRAKVLWDGAVPSDILHDWTAYYR
FT                 SLELLNSLEIPRWTGKGHDTQYCELHGFSDASTSAYAAVIYFKVDSSLGDR
FT                 QVSLLMAKSRVAPLKSLSIPRLELMAAVLLARMISYVRESLNLTDIPCHCW
FT                 TDSTVALAWIRQHPSKWKTFVANRVDEIQSKVPNSQWHYVPTQENPADCAS
FT                 RGIPVQSLLNKPDWWRGPEWLKLPSAQWPQTDVTLPLNSSLEAKSHLVSLX
FT                 IDTQDEWDLAQRFSSWPKLIRVTSYIFRFVNMTLKVRTLKHSVSSPDLYAP
FT                 TPTVLDQSEVINAKRFWCRYMQSRTFPRDIQELKAKGRVANNSKLLNLNPF
FT                 LDQYGLIRVGGQLRHSKLPDEAKHSIILGRHSLLSLLIQHAHLRTLHAGTQ
FT                 ITLRVLRDEFWILRARQTVKSIIHGCVRCARERTDKSHELMGDLPDMRVRK
FT                 SARAFLHCGVDYAGSILVRPSAGRGYKARKAYIALFICMTVRAIHLELVSD
FT                 YSTDAFLAAYSRFCARRGIPSCLYSDNAKNFRGADQELRSMWKATQSDPRV
FT                 LNKLAFESVRWKFIPPSAPHFGGLWEAGVRSVKFHLKRIVGNYTLTFEEMT
FT                 TLLCKIEACLNSRPLAPFSDDYEDYSALTPAHFLIGTALTNIPSPTLLDEK
FT                 ETLLSRWQLIQRLQSVFWRKWSNDYLQTLHQRPKWRTVQNLAKVGRIVLLR
FT                 NPLAPPCQWELGRIIECHPGADGLIRVVTVKTARSVFKRPIVKLSFLPIDI
FT                 SEN"
XX
SQ   Sequence 5465 BP; 1435 A; 1385 C; 1138 G; 1499 T; 8 other;
     tagaatttct ggtccttcga gccggatcgg tgggtcactt gtgcatcgac gaagagacat        60
     tcttgtacga cctctagtca cattagactg aagaaacttg agcagcttaa gtcagtgaat       120
     tataaagtga gtgagtcctc agtcaaaatg gaggatttac tagcacaaca acgwgcgatt       180
     atgcgatcca tcsgacgcgc attggacaat ttcaagaaaa taggcaaatc taattacaca       240
     gtcgaacttg ttcgccatag actcagcgcg ctaaaggatc wattctcacg ktgtsagcaa       300
     acccactatc agatcctagc caaagcgggc aaggaattca ccacctctga gaagtacttc       360
     acggatgacc aattctcatc ctgtgaggac gcctactacg acgcatccga ctacatggtc       420
     aaagtcctcg ctacgctgga gccgcagcat ccatcgccaa acgcctccgg aaacgtgagc       480
     caaggacagt ttaatttctc ttctaaatct gtttgtaagc taccgcgtat taatcttccg       540
     aaattttcgg gtgaatatca cgaatgggag gcttttcggg atcatttcaa cgcacttatt       600
     ataacgaaca gtgaattgtc ggatgtcgcg cgattacagt atctgatctc gtgtctcaag       660
     ggttcagctc aagatttgct caaaaatctc gctattaccg acgctaattt taagattgct       720
     tggcatttgc ttgtgtcgcg atacgataat cctcggcgtt taatacatga acatttacat       780
     tcgatacata aattattgcc cgcaaattcc gaatctccgt cggaattatc aatcttgcga       840
     gacaaaacga ataccgcgat acaggctctt gcctcactaa actgtcacga catctgggat       900
     cattggctag tttatttcat tacttcgaaa ttagataaat ctacgcgaaa ggcatgggaa       960
     cttcactcgg gtatgaaacc gagtatccat cttacaagca gttagattca tttctcgcgg      1020
     ctcgcattcg cgcattagaa aacatatttc cagaatcttc ggttagcggg aagaaaacaa      1080
     agaaagtgtt cgttcaaagt catgcagcga acacgactca tgctcagtgt cccatatgtc      1140
     aacagaatca tttcttatcc gcgtgttcta aattcaaaag caaaacagta gctcagcgtc      1200
     gcgaccttgt aaaggaattt caccattgct tcaattgtct tagcgcgaaa catacaaaat      1260
     cgaaatgtac gagtaaattc tcgtgtcgtc attgtcaaca gaagcatcat acgctgttgc      1320
     acgagccgtc ggctcaacca gcatccgtcg agagcccatc tcacccaact acgtcaactt      1380
     cgaacgaagc taactctatt gtttcaaatt tactgccgaa aataaatcgg tcaaattctc      1440
     aaattctttt agcaaccgcg tggattcggg tgggctctgc gacaggtcgc tgttctacag      1500
     tgcgagctct cttagatcaa ggttcaatag ccaccttgat tagtgaaaat ctcgcacaac      1560
     gattgcgttt gaagcgcgag cgaatctcag tcgccatttc cggaatcgga gacaccgcga      1620
     cgtcagctcg acacagtgcc gatatacaag tgtcttcgcg atcgggtaat gggccggcat      1680
     actccaccaa cgcaatcatt ctcaagtcat taaccaaata cgcgccgcga catgacgtcg      1740
     atctttcttc attttcacat cttcgcgatc tagacctagc ggatcctaat ccctcaagct      1800
     cctctccgat tgaaatcata gtcggagccg acttgtatgg aaatgtcttg cttcccggtt      1860
     tacaatcgcg ttctctctct gaacctgtag cacaaaatac cattttcggt tggatagtct      1920
     caggtcctgt ctcatctcat cttagctcct ctcatatttc ttccattcaa gtgcattcct      1980
     gctcagaaat gcatactctc gataaggagc ttcgcgmttc tgggaagtcg aagaacttcc      2040
     gcggaaaccg ttccttactc cggaagaaaa gcaatgcgag gatcactttc tcgcaactca      2100
     ctctcgtaat gagcaaggtc gattcatagt tcgattgccg ttcaagacgc ctcctccgtt      2160
     gaatatcgga gattctcact cttcttcgtt ttcatgtctt tctcgactcg gcgatttgaa      2220
     actcagcccg aagtggcaaa ggaatacagt gctttcatga gcgaatatga aagcttaggt      2280
     cacatggttc ccgtcagcga tacggaaacc tctcgctcac agatcattta cattcctcac      2340
     catgcggtta ttcgcaatag cagcactacc acgcgtcttc gagtgatgtt caatgcatca      2400
     agccgcacgt cgaacggatt ttcgttaaat gatcatctct tagttgggcc cagattgcaa      2460
     accgatctga ccattatcat tcttcgttgg cgtcagtatc gctatgtcta tactgccgac      2520
     attgctaaaa tgtaccgcca aattctcgtc gacgaacgag atgtcgattt ccaaagaatt      2580
     ttgtggcgat cagattcgtc ccaaaacgtt caagcctatc ggttactcac tgtcacatat      2640
     ggaaccgcat gcgctccata tctagctctt cgcgttctta aacaattagc cttaaccgat      2700
     ggcgcctcat ttccgctcgc tcaatctgtt cttcagcata acgtctatgt cgacgattgc      2760
     atcttcggag cagatgataa acctatggcc aaacaaacgc gcgatcaatt gatgaagtta      2820
     ctaaatctcg ctggattcaa tccgcgaaag tggtccagca attgtctcga tcttctccaa      2880
     gatatcgatt cgcgtgacca tggcctatct cacagtaaat ctttggagtc cgacgatcag      2940
     ttccaagtct taggactcaa gtggcatcca ccgcgtgatg tctttcaatt caatgtaacc      3000
     ttgtctaact cgctgccatc aaccaaacgc acaattctct ccgctatctc gaaattgttt      3060
     gatccaatgg gatggctcac tcccatcata atcacggcaa agattctgat gcagcgctta      3120
     tggcgtgcaa aggttctctg ggatggtgca gttccttctg atatccttca tgactggact      3180
     gcatattatc gttctctcga acttctcaat tctctcgaaa ttcctcgctg gaccggaaaa      3240
     ggtcatgaca cacaatactg tgagctgcac ggtttttcgg acgcctccac gtctgcttat      3300
     gcagccgtga tctatttcaa ggtcgactct tctctaggtg atcgccaagt ttctttatta      3360
     atggcgaaat ctcgagtcgc tcccttgaaa agtctaagta ttcctcggtt ggaattaatg      3420
     gctgccgttc tcttggcccg tatgatttct tatgttcgag aatctcttaa cttaaccgac      3480
     attccatgtc attgttggac agattccacc gtcgctctag cttggataag acaacatcca      3540
     tccaaatgga aaacattcgt agcgaatcga gtcgacgaaa tacaatctaa ggttccgaac      3600
     tctcaatggc attacgtgcc aactcaagag aatccagctg attgcgcgtc gcgaggcatt      3660
     cccgtacaaa gtctgctcaa taagcccgac tggtggagag gtccagaatg gcttaaatta      3720
     ccaagtgctc aatggcctca aactgatgtt actcttcctc tgaactcttc gctcgaggcc      3780
     aagtctcatc ttgtcagtct tgkaattgac actcaagatg aatgggatct cgctcaacga      3840
     ttctcatcgt ggccaaaatt aattcgcgtc acatcgtata tttttcgttt tgtcaacatg      3900
     acttaaggta agaaccctta agcattccgt ctcttctccg gatctctacg ctccgactcc      3960
     aacagtatta gatcaatccg aagtgatcaa cgccaaacgt ttttggtgtc gatacatgca      4020
     atctcgcaca tttcctcgcg acatccaaga actaaaggcg aaaggtcggg tcgctaataa      4080
     tagtaagctc ttaaatctta atccctttct cgaccaatac ggtttgattc gagtcggagg      4140
     acaactccgt cactcaaagc tcccggacga ggcgaaacat tcgattattc tcgggcgaca      4200
     ttctctactc tcacttctca ttcagcacgc tcatctccga actcttcatg caggtacgca      4260
     aatcactctc cgcgtacttc gcgatgaatt ttggattctc cgcgctcgtc aaacggttaa      4320
     atcaatcata cacgggtgcg taagatgtgc gcgcgagagg actgataagt cgcatgaact      4380
     catgggagat ctgcccgata tgcgcgttcg gaagagtgct cgtgcattcc tgcattgcgg      4440
     agtggattat gccggatcca ttctcgttcg tccctccgcg ggacgaggat ataaagcccg      4500
     aaaagcgtac attgcgctgt ttatatgtat gactgtccga gctattcatt tagagctcgt      4560
     cagcgattat tctacggatg cgttcttagc cgcatatagt cgattctgcg ctcgccgagg      4620
     catcccgtca tgcctatatt cagataatgc gaaaaacttt cgaggagccg atcaggagct      4680
     tcggagcatg tggaaggcca ctcaatccga tcctcgcgta cttaacaagt tagctttcga      4740
     atcggtacga tggaagttta ttcccccgtc agctcctcat ttcggaggac tatgggaagc      4800
     cggagtgcgt agcgtcaaat ttcatttaaa acggattgta ggaaattaca cgctcacttt      4860
     cgaagaaatg accacgttgc tttgcaaaat agaagcctgc ttaaattcgc gtcctcttgc      4920
     tccgttttcg gacgattatg aagactattc tgctttaacg cctgctcatt tcctgatcgg      4980
     caccgcgttg acaaacatac cgtctccgac gcttcttgac gagaaggaaa cgctcctatc      5040
     tcgatggcaa ttgattcagc gattgcaatc cgtcttttgg cgaaaatggt ctaacgacta      5100
     tttacaaact ctacatcaac gaccaaaatg gcgaactgta caaaaccttg cgaaagtagg      5160
     acgcattgta ttattgcgaa atccgctcgc tcctccatgt caatgggagc tcggaagaat      5220
     catagaatgc caccctggcg cagacggact aattcgcgtc gtcaccgtta aaacggcgcg      5280
     ttcagtattc aaacgaccaa ttgttaaact tagtttcttg ccgatcgaca tctccgaaaa      5340
     ttgaaattgc gctaccgcaa gttgattgta actcmgtagg aattaaggta actgtcttat      5400
     cattattcct gcatggcggg cggcacttga tgtaatttcg gatgtaaaat ccgaggcggg      5460
     cggta                                                                  5465
//
ID   BEL-2_PBa-LTR repbase;    DNA;    INV; 977 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-977
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 672-672 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 977 BP; 240 A; 255 C; 212 G; 270 T; 0 other;
     tgttcgaaat tgctataagt aaatcgcgcc tgaaagcgag acgcggaaca cgcgaagcgc        60
     gcgtgacgat ccgcggcgat cgattaccct aaatcatccg atcgatggcg ccaggtagcc       120
     cgtcgatacc tatcacgcgg aagtaattat gcttatcagc cacccttcaa gggcggcgtt       180
     gtttcgcaat cgacggaacg tatgtgtgtg ctatcgattg gccgaaaatc acatgattcg       240
     tcgtgtcaat cgctgatagg acgaaatcga tcggatgatc ccgcaagctt ctcgaaaagc       300
     tctcgttacc aaaattctct gcgagtcgac cataatcctt gctcctggaa agtataccgt       360
     gctcgtgtcg tcaagtcagt gctcttgtcg ttctctatcg ctcttgtcgt actcgtaagt       420
     tcagctcgtg tcgtaagtta gacttgtcat ttcactcgtc tcgtaataac gttacgtaaa       480
     tcgtcgttgc gagagacttt tcggcgaagc attttgaatc gtggcgaatc cctagttcac       540
     attctctctc gtcacatcga gattctagtg ccttcgaact cgacaagaat atttactgcg       600
     agcattctca aagagcgaat tctcagtgac aagtgcgcgt atctcagctt gacgaagcag       660
     cacgtcgtca ttcgttaagt tcgatcaagg tgcaagagct tgcgaccatt ctctcatcac       720
     gctgcggaca ttctccaatc acgtgatcac gcaattcgta cgaactattc aaaccagtgc       780
     gtgcaatctg cctagcgaac atctattcta ttttctcaac gtgtacgcca ccgtcagact       840
     ctatattctg tacatttcac tggtaaaaac tgacttatta aattagtgtg atctgtctca       900
     agaattctcg tcattctatc acccatcgga tcctcagtcg agggtcgttc cagcgaacgg       960
     cgtctcaatt ccgcaca                                                      977
//
ID   BEL-2_PPo-I repbase;    DNA;    INV; 2275 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2275
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2958-2958 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2156
FT                 /product="BEL-2_PPo-I_1p"
FT                 /note="retropepsin, reverse transcriptase and
FT                 peptidase A17."
FT                 /translation="KGIALQRDVYARNGSTSRREKPREATILTATDVKSET
FT                 KQCLCCGGXHGVEECTKLANMSVTERWSWAQDNKICFNCLRSRHRRFSCKE
FT                 KRCGVDECRGRHHEMLHAERASPTTQVNGTTEETALVASTAATCGSVLLKV
FT                 CPVXIRGPEGTEIATYALLDEGSTISLIDQQLAEEIGAKGPTRNLRIRCVS
FT                 ATNNHPNSRIVDLTIRRKGQDESHAIKARTVKSLAVGMQTVSTDCLRLSHL
FT                 RDLPRDACFKNAKPKLLLGADNWHLIISRNIRIGQRNEPIAANTLLGWVIQ
FT                 GTMPRAVCEDEETVLHIRSPYSPGPNDXDDEINALFKRQVKIDENDQPAQM
FT                 FLWRGDDXRNPPQEXAXTSTIFGARSSPXLAHSVRDCXARVHADTXRLALD
FT                 AITKNHYMDDYLDSYVTXDDMQKTTKEVVEVHASAGFILASWNSNKLEALG
FT                 NIPIDKRATEPTEVGKTSEAKTLGLRWISEEDALSFNVSMCRVXQEVKDLH
FT                 RPPXKREALSAVMSXFDPLGLLSYVTITAKIPLQDLWRMKTVSWDDELPTS
FT                 SAEDFQQWLHATQITAQLRLQRCYAPTGGVVERRLHVFXDANERAYAMAAY
FT                 WRTRYENGSTRIXLIDAKAEVAPIKTQXTPRLELPASLXGARXADAIQTXH
FT                 XIKADKVRLWTDSRTVLHWIRNNTSRYSPYVAXRLGEIAEQTTRERLSAYA
FT                 MPFAYTGIXYFGLLTVTV"
XX
SQ   Sequence 2275 BP; 651 A; 542 C; 610 G; 440 T; 32 other;
     gcaaaggaat agctctgcag agagacgtgt acgcgagaaa cggaagtacg tcgcggcgag        60
     aaaagccacg agaagctacg atacttaccg ctacagacgt caagagtgaa acgaaacagt       120
     gtctttgttg cggtggacwg cacggtgtwg aagaatgcac gaagctcgca aacatgagcg       180
     tgacagaaag atggtcgtgg gcgcaagata ataagatatg cttcaactgc ttacgcagtc       240
     gacatcgtcg attctcatgc aaggaaaagc gatgcggtgt cgacgagtgc agaggccgtc       300
     accacgaaat gctacacgcc gaaagggcgt cgccgacgac acaagtaaac gggacaaccg       360
     aagaaaccgc tctcgtcgca tcaacagcgg cgacatgcgg ctckgtgtta ctaaaggtgt       420
     gcccggtawt aatacgcggt ccggagggta cagagatcgc cacwtacgcg cttcttgacg       480
     aaggttccac tatatcgcta attgaccaac aattagcaga agagataggt gcgaagggac       540
     caacgcgtaa cctccgcatc cgctgtgtgt cggcgacgaa caatcatccg aatagccgca       600
     tcgtggacct kactattaga aggaaaggac aagacgagtc gcacgcaata aaagcgagga       660
     cagtgaagag cttagccgtc gggatgcaaa cagtgagtac cgattgtttg cggttaagcc       720
     acctacgtga tttgccgagg gacgcttgtt ttaagaacgc gaagcctaag ttattattag       780
     gtgcggacaa ttggcaccta attatatctc gcaacattcg tatcggacaa cgcaacgaac       840
     cgatcgcggc gaacacgtta ctcggttggg tgatacaggg gacgatgcca agagctgtat       900
     gcgaagatga agaaactgtg cttcacatcc gctcgcccta ctcaccggga cccaacgacg       960
     mcgacgacga gattaacgca ttattcaaga ggcaagtcaa aatagacgaa aatgaccagc      1020
     cagcacagat gtttttatgg cgcggagacg acmgccgtaa tccacctcaa gaawacgcga      1080
     tkacgtcgac gatattcggc gcgagaagtt cgcccktttt agckcacagt gttcgwgact      1140
     gcaamgcgcg cgtacacgcc gatacgcawc gactagctct cgacgccatc acgaagaatc      1200
     attacatgga cgattatctc gatagctatg ttactktcga cgacatgcag aaaacgacaa      1260
     aggaagtggt cgaggtacat gcaagtgccg gttttatttt agcgagttgg aattcgaaca      1320
     aactcgaggc gctaggtaac atacccatcg ataagcgtgc cacggaaccg acggaagtgg      1380
     gcaagacatc ggaggcgaaa actctmgggc tgcgatggat atctgaggaa gacgcgttgt      1440
     cctttaacgt gtcgatgtgt cgtgttmctc aagaagttaa agatctccat cgaccgccga      1500
     staaacgaga agctttaagc gcagtaatgt ccatkttcga cccgttaggw ctgctcagtt      1560
     acgtaacaat aacggcgaag atcccgttac aagatctttg gaggatgaaa accgtgagct      1620
     gggacgacga actaccaaca tcttcagcgg aagacttcca gcagtggcta catgccacac      1680
     aaataaccgc acagcttcgt ctccagcgct gttacgctcc tacgggggga gttgttgaac      1740
     gacgactaca tgtgtttaas gacgcaaacg aacgagcgta cgcgatggca gcctactggc      1800
     gaacccgata tgaaaacggt tcgacaagga ttamtctaat agatgcgaaa gcggaagtag      1860
     ctccgattaa gacgcaaags acaccgcgtc tagagttacc ggccagtttg wtaggggctc      1920
     gtttwgccga cgcgatccag accgakcatc kaattaaggc mgacaaagta cggctatgga      1980
     cagactcgcg gacagtgctt cattggatta gaaacaatac gtcgcgatat agtccgtacg      2040
     ttgcgsgtcg gttaggggag atcgcagaac aaactacgcg ggaaaggtta agcgcatacg      2100
     caatgccctt cgcatatacg ggcattsaat atttcgggct attaacsgtc accgtctaga      2160
     attagttaat agccttacga cagactccgc gatcatggcg ttaagacgaa cggcggcgcg      2220
     gcgcggatgg ccgaacgttg tctactccga caacggaaca aatttccgag gagcg           2275
//
ID   BEL-2_SI-I  repbase;    DNA;    INV; 5220 BP.
XX
AC   AEAQ01001442;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_SI_;
KW   BEL-2_SI-LTR; BEL-2_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5220
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01001442; Positions    7402    2183.
XX
CC   Positions [4002-4598] - Integrase core
CC   'GTATT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1116..2174,2178..3707)
FT                 /product="BEL-2_SI-I_1p"
FT                 /translation="MNCEKFRRKPAKERLEVVTANRLCINCMGRHQVSACS
FT                 SPKACARCAARHNTLLHDAYETAPGAVVAPSPSVHAAHHPHFEPPQMLFAT
FT                 ARVLVTDRFGTIHAVRALVDPESETSLITDSLAQRLRLPQTPVSVATYGVG
FT                 GLRSGVSRGRIAMNLTSRVGNAVFAISALVMPRLSIYGGSVEANSSGWSHI
FT                 RDLDLADPDFSSTDPVELLLGVDVYAKVARPGMRLGADEEPIAQQTALGWI
FT                 IMGPANEHRFRREVALRDAYSQFMAEYLELGHMTPAPSLPADCSRACYLPH
FT                 HGVWKGGGEEARIRVVFNGSSRTSSGISLNGELPAGPNLLPTLCDVIMRWR
FT                 KHQFVLAADIKMYRQIWVHPEDRDLQRIYRRIGNRVQEFHLNTVTYGLASA
FT                 PYLVVRTLRQLVEDEGERFPRAAEALRRDTYVDDVLSGASSQLETCELREQ
FT                 LTQLCLAGGFRLRKWLANHEDLLRDIPAEHRSSLPSTVALTSEEHDVLGIR
FT                 WLPAEDNFAPTVKSMTEELVTKRTVLRQTARLFDQLGWLAPVVINAKLLIQ
FT                 AAWLRRLDWDAPLAADDVECWRRLRTELPVLEEIRIPRWSRADSPGAIIEM
FT                 HGFADASERAYGAVLYLRTIADGRACLTLLIAKTRVAPLRQVSLPRLELCA
FT                 AALLARLATHTAFVLTLDGAAVHLWTNSTVVLGWFQGHPTRWTTFVANRVA
FT                 EVQGAVPDAHWHHVPGRINPADCASREMSPLELRAHELWWRGPQYLWASSA
FT                 AWPAETAVALSRGLPEQRAARVHTACEEEEPEELNRFSSLRCLLWVTACMR
FT                 CWLTLAASRADLTRGAVLSATELADARAMWIRCAQRIAFRDEIKALSRGRI
FT                 ERSRGVHSGC"
XX
SQ   Sequence 5220 BP; 1039 A; 1435 C; 1598 G; 1148 T; 0 other;
     ttttctggtc cttcgagccg gatcgtgcgt cgcagccggt gcatatctgc ctacattttt        60
     ctctcgcgta gtaaacgtgc cagtgctgta gtgtgagtgg tggagcccaa cctccaaatt       120
     ctccaaatgg agacgttatt ggagcagcaa tctgagctcc gcggacgcat ctctcgcgtc       180
     gtcgcgaatc tcaagaagac cggcgtcgcg aacctgaccg tcgaccacgt ccaagcggcc       240
     ttgaccattt tggaaaagcg ataggcaaag ttcgaggaga accacgataa gctcgggctt       300
     gctcacggga aggagttaag gaaaaccgag tactatacga acgactatgc tgaagaggtg       360
     gagatgctct acaccagcca acgagctgca ttaatggacc tagggcggtc gttgaaggca       420
     aagaccgaag gaaatgtttc gacgatggtc agggccgaaa gcacgcagcg agccccgctt       480
     ccttggctcg agcttccaac gttctccagc aatttcgagg actggccggt attccgggat       540
     ttgttcgact tcatcgtcgg tcaggatccg catttgtccg acgtccaaag cctccactat       600
     ctaaagacga gggtcaaggg aggagcggaa cagtttttga ggggcttgcc ctcaacggac       660
     gcgaattata aacgcgcatg gtcaactttg aaaggccact atgaaaaaaa aaggttgtta       720
     gtcaaggctt acttgtccgc gattacatcg ttgcccaaaa tgaaagcgga ctgcgtagcc       780
     gacctgcgac ggatctatca cggcatggta gcatccaccc aagctttgaa aggtatcggc       840
     gagcccattt ccaataccac tcacttgctc gtgcatctca tggtggagtt gctcgacgcg       900
     ggtacaagac gcgagtggga aaattccatc gcaaaaaaag cgacccgccg tcgtttgacg       960
     agttcaagga cttcctcgag gaacagctcg tgacgcacga gtcgctacgg tctgtcaagg      1020
     gggagtcctc ctcgggaaga tccgctcatc acaccgggaa gcagagcaga agctccgagc      1080
     gcagctgcgt ggtgtgcaag cagaatcact ttattatgaa ctgcgagaag tttcgtcgga      1140
     aacctgcaaa ggagcggttg gaggtagtga cagccaatcg cctgtgcatc aactgcatgg      1200
     gacgacatca ggtgagcgcg tgctcttcgc cgaaggcgtg tgctaggtgc gccgcgcgcc      1260
     acaacacact cctgcatgac gcgtacgaga cggctccggg agccgttgtt gcaccttcgc      1320
     cgtcggtgca tgccgcgcat caccctcact tcgaaccccc tcagatgctt ttcgccaccg      1380
     cgcgcgttct ggtgacggat cgattcggaa ctatacacgc ggttcgagcc ctcgtagatc      1440
     cagaatcaga gacttcgttg atcacagact cgctggccca acgcctgcga ctgccgcaga      1500
     caccggtgtc cgtggcaact tacggagtgg gcgggttgag gtcgggtgtg tcgcggggac      1560
     gaatcgcgat gaatctgacc tcgcgcgttg gaaacgcggt atttgccatc tccgccttgg      1620
     tgatgccaag actctcgatt tacggtggtt ccgtggaagc taactccagc ggatggtcgc      1680
     acattcgcga ccttgatctc gctgaccctg atttcagctc tacggacccg gtcgagttgc      1740
     tactcggtgt cgacgtctac gccaaggtgg cacgaccagg catgcggctg ggagctgatg      1800
     aggaaccaat tgcgcagcag accgctctgg gatggatcat catgggtcca gcgaacgagc      1860
     accgctttcg gagggaagtc gctcttcgtg acgcgtactc acaattcatg gctgagtacc      1920
     tcgagcttgg ccacatgacg ccggcgcctt ccttaccggc ggattgttca cgcgcctgtt      1980
     acctgcccca tcacggagtg tggaagggcg gcggcgagga ggctaggatc cgcgtcgtgt      2040
     tcaacggttc ttcacggaca tcctctggta tctccttaaa tggcgaactt cctgcagggc      2100
     ccaatttatt gccgacgctc tgcgacgtga taatgcgctg gcgtaaacac cagtttgttc      2160
     tcgctgcgga catctaaaag atgtaccggc agatttgggt gcatccggag gaccgtgacc      2220
     ttcaacggat ttacaggagg ataggcaacc gagtccagga gttccacctt aacacggtta      2280
     cttacggcct ggccagtgca ccctacttgg ttgttcgaac gttgcgtcag cttgtcgagg      2340
     acgagggtga acgctttcct cgagccgctg aggccctgcg gcgggacacg tatgtggacg      2400
     atgtgctgtc cggggcttcc tctcagctcg agacctgcga gctgcgcgag cagctgactc      2460
     agttgtgctt ggcgggcggc ttccgcttgc gcaagtggct cgccaatcat gaagacctgc      2520
     tgcgcgacat ccccgctgag caccggtcgt cgctgccgtc gacggtcgcg ttgacgtcgg      2580
     aggagcacga cgtcctgggg atacgttggc ttcccgctga ggacaacttt gctccaactg      2640
     tcaagagcat gacagaggag ctggtcacca agcgcacggt gttgaggcaa accgcgcgtc      2700
     tcttcgacca gctgggctgg ctcgccccgg tcgtaataaa tgctaaactt ctcattcagg      2760
     cggcgtggct acggcgactt gactgggatg ccccccttgc tgcagacgac gtggagtgtt      2820
     ggcgacggtt gcggacggag ctgcccgtcc tggaggagat ccgcattccg cgctggtcac      2880
     gtgcggattc tccgggtgcg attattgaga tgcacggttt cgccgatgcg tcggaacgcg      2940
     cctacggagc agttttatat ctccgcacaa tcgcggacgg cagggcgtgt ctgacgctgc      3000
     tgatcgccaa gacgcgagtc gcgccgctca gacaggtctc ccttccgcga ctggagcttt      3060
     gcgcagctgc tctgttggca cggctcgcga ctcacaccgc tttcgtccta accctagatg      3120
     gagcggcggt tcacctttgg acgaactcca cagtcgtttt gggatggttt caaggacatc      3180
     ccacgcgatg gacgaccttc gtggcaaaca gggtcgccga ggttcagggt gcagtgccgg      3240
     acgcgcactg gcatcacgta ccggggcgga tcaatccggc cgattgcgca tcacgagaaa      3300
     tgtcacccct ggagttgcga gcgcacgagc tgtggtggcg gggacctcag tacctgtggg      3360
     cgagctctgc tgcttggccc gccgagacag cggtggcctt gagtcgtgga ctgcctgagc      3420
     agcgagctgc tcgggtccac accgcttgcg aggaggaaga accagaggag ctgaatcgct      3480
     tctcctcgtt gcgttgtttg ctttgggtga ccgcctgtat gcgctgctgg ctgacgttgg      3540
     cagcttcgcg tgccgacttg acgcggggag cagtgctctc ggctactgag ctggctgacg      3600
     ctcgggccat gtggatccga tgcgcgcaga ggattgcctt ccgagacgag attaaggctc      3660
     tgtcgagggg gcgtatcgag cgctctcggg gtgtccactc cggttgctga gtccgtttct      3720
     caacgatagg ggactgctgc gcgtgggtgg tcgactgaag cacgcgctat tgaatgcgaa      3780
     ccagcgtcat cccataatac ttccgcaggg ttcgcatctc acctatctgg tggtcgcgga      3840
     cgagcacggt cgtgttcttc atggaggcac ccagttaact ctcgcatcgt tacgccggag      3900
     gtactgggta ctgcaaggtc ggcaattggt gaagcactac atttattgtt gtattccatg      3960
     cttgcgatgg cgggcggcga atccccaacc acggatgggc agcctcccac gagccagagt      4020
     cgttccgaat tgaccgttca ctcatacggg cttggactac gctggaccga tcctcctgcg      4080
     caccacgaag ggtcgaggtc acagggccta caaggccatt gtggcagtct ttgtttgttt      4140
     cagttcgagc cgtccacctc gaagtcgtta gcgactacac agctgacgcc tttcttgcag      4200
     cgttccagcg cttcgtgtcc cgcagaggat tgtgcttgca cctgtacggt gattgcggga      4260
     ctaacttcgt gggcgcggat cgacagctgc gcggtctttt gggaatggcg agcgagagta      4320
     gcaggagtat cgtaggaaag ctagcggagg agggtgtgga gtggcacttc aaccctccag      4380
     ctgcccctca ctttgggggt ctctgggaag ctgcggtcaa ggccttcaaa caccatctgc      4440
     gccgagtcat cggcgagtca acactgactt acgaggagat ggctacattt ttggccgaag      4500
     tggagacgtg tctcaattct cgaccgttgc aggcgctttc agacgacgcc gacgaattgg      4560
     atgtgttgac accgtgccat tttctcgttg gcgctccgtt gaaggctatc cccgaaccgg      4620
     tattgacggg gattcccccc agtaagttga cacgctggaa gctactccag caaatgaggg      4680
     atcatctttg gcagcgatgg tcgcaggaat acctccaggc gctgacccct cgaccaaggt      4740
     ggtggcgtgc agagggtggc ctgaaggagg gtcagcttta cctgctgaag caggaaacaa      4800
     cgccaccgac gcggtggccc ttggtgcatg tcacgcgtct ccacccgggt gatgatggcg      4860
     aggtgcgggt cgtgttcgtt cggggagcta caggggagct tcggcgacca gttatcaggc      4920
     tcgtccctct tccaacggac gaggagagta tgcagcgcca tgcttagctg agctcactca      4980
     gaggtcgcat tcggagaagg ctcgttgtat tgtgcgctcc ggtttaaggt ctctcctctg      5040
     ttcgcaccgc gccagttgag cgagttgtgc agctcgttgc ttataataat agtacatagt      5100
     tctatagtag cgttagttat aataagttgt gttcttaggt tgtgaagaac taggccagca      5160
     ttgttgcgct gtttcgggcg gagtaaaatc gccgaatttt tatcggcgag gcgggcggga      5220
//
ID   BEL-2_SI-LTR repbase;    DNA;    INV; 426 BP.
XX
AC   AEAQ01001442;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_SI_;
KW   BEL-2_SI-I; BEL-2_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-426
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01001442; Positions    2182    1757.
XX
SQ   Sequence 426 BP; 108 A; 106 C; 105 G; 107 T; 0 other;
     tgtgcgagat cgcacccaac tatgttcgac agccgaattg ctcgttctcg cgccgcgacc        60
     aagccagcag cggcgtgaca acgcatgaac ggcagcggga aagagcgtga tttccgatgt       120
     ttgcgcgagc ttctagaaga attcgggatc gccgttgctg actaagcata agcaagagaa       180
     gtcgaaaaac agccttcacg acgacggatt cctctaaaag cattcctcgc gcacattata       240
     aataggcggc ttaatgccat taggggcact tggttcgaga ctgttctcgc gttcggtgcg       300
     tcgccgacgt tttgtgaagg cctcaataaa atattaaatt ttgtcaagtc attagtcaag       360
     cattagtcaa ttcgccttat cccattactc cgcgtgctgt tttgcagtgc cgaaatattt       420
     agctca                                                                  426
//
ID   BEL-2_SpEx-I repbase;    DNA;    INV; 6235 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6235
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6884-6884 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1025..6190
FT                 /product="BEL-2_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSESLKLKELIIKRGSIRGRVTKFKLYLDSLVLVESI
FT                 SNLEVDKLALKLSKIETLFVEFDEVQNLIEISNEEIQSSELATRDLIENDF
FT                 YHCIATAQSLIRKQQDNEYQSQNKSSVATCHHNDHSCNALGFKLPVIKIPN
FT                 FDGTYFKWLEFKETFVSLVHNNNKIESIHKYHYLQSYLEGEAARVIANLEV
FT                 SHNNYPEAWKLLCERYDNKRQLINNHLKSLFNFNNIQENDKSLRYVIDHVT
FT                 KNLRALNSLGLPTDKWDVLIIYFIAGKLSSSTYFKWEEHINSLSDIPSLND
FT                 FFNFLKRRADVLETVYHHKHEPQDNKQKQSSTNQNKHNTSKSLVVAVPNET
FT                 NTFPKTSECLFCKNGHRLYECPSFKSISLEEKIAFVSSNKLCENCLRPGHV
FT                 VKRCRLSATCRHCKQRHNTLLHKTEGKENSNSVNSVSMSSTCSSEVLLCTA
FT                 RVKVTNPATNETMIVRALLDSGSQSTIITQAVKRHLNLIPQPSDTAIVGIG
FT                 NTKLNINTERCILRIHSETSSFNVTVSCLVLPQITGYLPKSKFDLKQFNIK
FT                 GFQLADPTFNEPSPVNILIGADLFWDIISAQQHSLGHGFPKLQASKFGWLV
FT                 TGPLPYFNKNKKETVTMCCFVSKNTSNNIHDELSKFWELESFPQKRPLSSE
FT                 EKLCEQHYLANTTRTNIGQFCVGLPLRDSIDCLGNSYTLAKRRFLNLEARF
FT                 RKQPELKEKYCQFINEYKALGHLSELPESRPLNGYFLPHHPVIREQSESTK
FT                 LRVVFDASARTSSGVSVNNLQMVGPVVQDPLFNILIRFRQHKYVLTGDIEK
FT                 MFRSVLLRESDRNLQLILWRDSEDKPLRTLRLNTVTYGFASASFLTTRSLW
FT                 QIGEECSDQKIKTIIQSDLYCDDLLTGASSEKELRHILLSVSSELEKGCFH
FT                 LRKYRSNLPELLADSIDLESGNLMISNATSTLGIGWTPSSDEFHFPYNVSL
FT                 SENVTKRTILSSTFKIFDPLGLLSIFTIKPKIILQELWSHKVGWDEPVPPE
FT                 VLTSWLKFYKKSQCLSSLKIPRCIIIDHASSVQIHCFCDASQRAFGSCIYL
FT                 RSISASSVVQVSLVCAKSRVAPIKPTTIPRLELCAALLGTQLTATVLAALR
FT                 CPIERQVYWTDSKVVLGWLNSNKTKTFVAHRVAAIHELTNPSDWRYVPTTV
FT                 NPADLVSRGVDPDQTDLSIWWNGPSFLLESEDSWPAFTADSIELPELKTHH
FT                 TLEGEDASSMPDLSVNLAKYSNLTTLIRVLARVLRFIQNCKSNLKSNLEIK
FT                 LRGPLQVSELENAXTVAIKLAQKDSFPIELEQLGKGKSLNSKAALASLNPF
FT                 LDENRILRVGGRIELSSYEYDKRHPILLHASHFLTKLIFKREHLRLLHVGP
FT                 QHLLASIRERYWPVGGRALARRAARECVTCRRFNARTMDNIMGNLPADRVE
FT                 ADFPFSTIGTDFAGPFLITDRKGRGCKITKSYLCIFICFRYKCVHLELVSD
FT                 LSMEAFLLTLKRFIARRGKPKVIYCDNGRNFVAAAKEINSFLESNSDSIID
FT                 SASREGIEFRFSPAYAPHFGGLWEAGVKSAKFHLHRVLKNIHLTFEELSSL
FT                 FAQIEAILNSRPLCPLSPSPQDLSPLTPGHFIIGRPLTSLPSPYLLDYSTN
FT                 RLDRFQRLEQARQHFWKRWSTEYVTELQQRTKWKVRCRGLKVDDLVLIKDD
FT                 RTPPLCWRLGRVSKLFPGNDGVPRVADISTSQGTVRRAINRLCLLPSPDXN
FT                 TA"
XX
SQ   Sequence 6235 BP; 1805 A; 1356 C; 1206 G; 1862 T; 6 other;
     agaagtggcg accgtgacag gacctgcatc gaagcgcggc caacagcaag tcatttgttc        60
     tacatcgaga acacgtggat ggcgccgtcg acaccggatg atctaatgta atctagcagc       120
     aacgggccgc gttgacaatc caagatcacc gtgcctatag tcctgctaca tggtcttcct       180
     ggtctagtct actacctcgg aacaaaaaac gtcaccttca ccaatcattc ttagaactgc       240
     tgggaccgcg gaagcccgat cgagcaaagt ccactataga acgagacacc tagctacatg       300
     cgtgctsctg cctgccagkg gattgcagat gatcagtttg gctgcctatt taaagtgagc       360
     tcgttccata ctactaataa acctattgtg ttatccctta gtctgtgcat ttagcggact       420
     tagattctca ggtcaagwga aattcctacg tttcgatttg tgtctaattt gcctcaccta       480
     actaagctgt agaggtctaa aatttccaca gattcgccta awtaatttca cttatactcg       540
     ccgccatttt aattttaatt gttgcacttt aaacctctta ataattccat tgtttattca       600
     aactaagcaa tttcatcaaa ccatccttga ttttagcttc tatctcctat ttatcactca       660
     attaaatatt taaatctcgt acatactaaa aatatcccga cttttcaaag taataaactt       720
     ataagccgtc atttattcgc tatacgagtg attaattgtt gtttctatct agcacactaa       780
     gacacacggg taaacctgtt tcagagatcg tgcgttatca ttcgtaacac gtcatcgctt       840
     gcgcatcgct gttacctgac tgccggtgcg accctccggc ccatctcacc gtcgcattgc       900
     aatcgacgcg ggccgcgggc acccgttgat caacagagcg aggagcgtat cgtatgctat       960
     acctatatct atttctttgt ttatttaata tctgtttgtg ttagcttatt acgagtttgt      1020
     tacaatgtct gagtccttaa agttaaagga attgataatc aaacgcggtt ctattagagg      1080
     gcgcgttacg aaatttaagt tatatttgga tagtttggta ttagtagaat caatttcaaa      1140
     tctagaagta gataaactcg cattgaagtt atccaaaatt gagacgttat tcgttgaatt      1200
     tgacgaggtg cagaatctta tagaaataag taacgaagaa attcaaagca gcgagttagc      1260
     tacaagagat ttaatagaaa acgattttta ccattgtatt gcgacggctc aaagcttaat      1320
     tagaaaacag caagacaatg aatatcaatc tcaaaataaa tcgtctgtgg ctacgtgtca      1380
     tcataacgat cacagttgta atgcgttagg ttttaaatta ccggttatta agattccaaa      1440
     ctttgatggt acgtatttta aatggttaga atttaaggaa acatttgttt cgttagttca      1500
     caataataat aagatcgaaa gcattcataa atatcattac ttgcaatctt atttggaagg      1560
     agaagcggct cgggtgattg ctaatttaga ggtttctcat aataattatc ccgaagcatg      1620
     gaagctttta tgcgaacggt acgacaacaa gcgtcaattg ataaataacc accttaaatc      1680
     tttgtttaat tttaataata ttcaagaaaa cgacaagtcc ttaagatatg tgattgacca      1740
     cgttactaaa aaccttcgcg cacttaattc actagggcta cctacggata aatgggatgt      1800
     tttaattata tactttattg ctggtaaatt aagttccagt acatatttta aatgggaaga      1860
     acacataaat agtttgagtg acataccttc ccttaatgat ttcttcaatt tccttaaacg      1920
     tcgcgctgat gtattggaga ccgtttacca ccataaacat gaacctcaag ataacaaaca      1980
     aaaacaatca tccactaatc aaaacaaaca taacacttcc aagtctttgg tagtggcggt      2040
     accaaacgaa actaacactt tccctaaaac atcagaatgt ttattttgta aaaatggcca      2100
     tcgcttgtat gagtgtccat ctttcaagtc tatctcattg gaggagaaga tagcctttgt      2160
     ttcttctaac aaattatgtg agaattgttt gagacctggg catgtcgtta aacgttgtcg      2220
     cctttcagct acatgtcgtc attgtaagca acggcataat actcttctac ataaaacaga      2280
     aggaaaggaa aattctaatt ctgttaattc tgttagtatg tcctcaacgt gttcttctga      2340
     agtacttttg tgtactgctc gagtaaaggt taccaatcct gccacaaatg aaactatgat      2400
     agtgcgagct ttgctcgaca gcgggagtca gtcgacaatt attacacagg ccgtgaagcg      2460
     ccatctaaac ctgattcctc agccatcaga cactgccata gtaggtattg gtaataccaa      2520
     attaaatatt aatacagaac gctgtattct acgcattcac tctgagacaa gttcctttaa      2580
     tgtgacggtt tcatgtttag ttttgccgca aataaccggc tacttaccta aatcgaaatt      2640
     tgatttaaaa caatttaata ttaaaggatt tcagttagca gaccccactt tcaatgaacc      2700
     atccccagtc aatattttga tcggtgctga cttattctgg gacattatta gtgcccagca      2760
     gcattcgtta gggcatggtt ttcctaagct ccaggcttca aagtttggat ggctcgttac      2820
     gggtccattg ccttatttta ataaaaataa aaaagagaca gttactatgt gctgttttgt      2880
     ctcaaaaaac acatcaaata atatacatga tgagttgtct aagttctggg aacttgagag      2940
     ttttcctcaa aaaaggcccc tgagtagcga agaaaaatta tgtgagcaac attatctcgc      3000
     caacaccact cgcactaaca ttggtcaatt ctgtgtaggg ttgccactcc gtgacagcat      3060
     agattgttta ggcaactcct ataccttagc caaaaggagg tttctcaact tagaggcccg      3120
     ttttcgaaaa caacccgaac taaaggaaaa atattgtcaa ttcataaacg aatacaaagc      3180
     gttaggtcac ctatccgaat tgccggagtc tagaccgtta aatggttatt tcttgcccca      3240
     ccacccagtg atacgggaac aaagcgagtc gactaagtta cgcgttgtgt ttgacgcctc      3300
     ggctcgcact tcttctggtg tttccgtaaa caatcttcaa atggtgggac cagttgtgca      3360
     ggatccctta tttaatatat taattcgttt cagacagcac aagtatgtcc tgacaggaga      3420
     catagagaaa atgtttcgct cagtgcttct cagagagtct gatcgcaatc ttcaactcat      3480
     actgtggcgt gatagtgagg ataagccctt aaggacactt cgtttaaaca ccgttactta      3540
     cggcttcgct agtgcttcct ttcttactac tcgttctctt tggcagatag gcgaggaatg      3600
     ttcagatcag aagatcaaaa caataattca aagtgatcta tattgcgacg atctacttac      3660
     cggtgccagc agtgagaaag agctgcgtca cattcttctt tcagtctctt ccgagttgga      3720
     aaaaggatgt tttcatctac gcaaatatcg gtcgaactta cccgagttac tcgcggactc      3780
     cattgatctt gaaagtggta atcttatgat tagtaatgca actagtacac taggtatagg      3840
     ttggacgccg tcttcagatg aatttcactt tccttacaat gtttcactat ctgaaaatgt      3900
     cacgaagaga acaatacttt cctcaacatt taaaatcttt gatcctcttg gccttctgtc      3960
     tatttttact attaaaccta aaataatact acaagagtta tggagtcata aagttggttg      4020
     ggatgagcct gttcctccag aagtattgac ttcctggtta aagttttata aaaaatccca      4080
     atgtttgtct tctttaaaaa ttcccaggtg tattataatt gatcatgcat cttctgtaca      4140
     aatacattgt ttctgtgacg cttcgcagcg ggcatttggc agctgtattt acctgaggtc      4200
     tatctctgct agtagcgttg tacaggttag cttggtatgt gcaaaatcgc gggttgcacc      4260
     tatcaaaccc acgacaatac cacggctcga actctgcgct gccctattgg gaacccagct      4320
     aactgctaca gtcttagccg cattacgttg ccctattgag cgtcaagtgt attggacaga      4380
     ctctaaagtt gtgttaggtt ggctcaactc taataaaacc aaaacgtttg ttgcccaccg      4440
     agtagctgct atacacgaat taacaaaccc ttcagactgg cgttatgttc ccactactgt      4500
     caacccagct gaccttgtct cgcgtggcgt tgatccagac cagactgatc tatctatttg      4560
     gtggaacggt ccgtcgttcc ttttagaatc cgaagattcc tggcccgcct ttactgcgga      4620
     ctccatagag ttgccagagc ttaagaccca tcatacttta gagggggagg acgcatcttc      4680
     tatgccagac ttgtctgtaa atttagcaaa atattctaat ttaactactc ttattcgggt      4740
     tctagctaga gttttaaggt tcatccaaaa ttgtaaatct aacctaaaat caaacctcga      4800
     aatcaaattg cgagggccac ttcaagtttc cgaattagaa aacgcccasa ccgtcgccat      4860
     aaagctggct caaaaagatt cctttcctat agaactagaa cagctaggaa aaggtaaatc      4920
     tttaaattct aaagccgcgc ttgcttctct taatccattt ttagatgaaa atagaatttt      4980
     aagagtcggc gggcgcatcg aattatcttc ctatgagtat gacaaacgtc atcctatttt      5040
     gttgcatgca agtcattttt taacgaaatt aatcttcaaa agggagcacc tacgcttgtt      5100
     gcacgtcggt cctcagcatc tcctggcatc tattagggaa cgctattggc cagtaggagg      5160
     cagagctctc gctagacgtg cagcacgcga atgtgttacc tgtcgtcgtt tcaatgctcg      5220
     tactatggat aatattatgg gaaacttacc tgctgatcgc gttgaagctg actttccctt      5280
     ctccactata ggtaccgact ttgccggtcc atttcttata acagaccgca agggacgcgg      5340
     ctgtaaaata actaaaagct acctatgcat tttcatttgc tttcgctaca aatgcgttca      5400
     tttagagtta gtcagtgact tatcaatgga ggcctttttg cttacattga aaagatttat      5460
     agctcgtagg ggtaaaccaa aggtcattta ctgcgacaat ggtagaaatt ttgttgcagc      5520
     agcaaaagaa ataaattctt tcctcgaatc taatagcgat tcaattatag actctgcatc      5580
     tcgcgaaggc attgaattcc gcttctcacc agcatacgct cctcactttg gtggtctctg      5640
     ggaagccgga gtcaagtcag caaaattcca cctacacaga gttctaaaaa atattcattt      5700
     gactttcgag gaattgagtt cgctatttgc tcagatcgaa gcaatactta atagccgacc      5760
     cttatgtcct ttaagtccct ctccacaaga cctatctccg ctcaccccgg gccactttat      5820
     aattggtagg ccactgacgt ctttgccatc accgtacctg ctagactata gcacaaatcg      5880
     tcttgaccgt tttcagcgat tggagcaagc tcgtcagcat ttttggaagc gatggtcaac      5940
     tgagtacgtc acggaactcc agcaacgcac aaagtggaag gtgcggtgtc gaggactgaa      6000
     ggtagacgac ctagttctta tcaaggatga taggactccc ccactgtgct ggcgccttgg      6060
     aagagtctca aagttatttc ccggtaatga cggtgtacct cgcgtcgctg atatatccac      6120
     ctcacaaggc accgtacggc gagccatcaa cagattgtgt ttgctgcctt caccagatka      6180
     caacacggct tagaatcttg aaagcttcct ccagagcttt caaggccccc gagga           6235
//
ID   BEL-2_SpEx-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-226
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6873-6873 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 226 BP; 67 A; 53 C; 26 G; 79 T; 1 other;
     tgtctacgac gcattccttc atctataata tttaatctgc atacctatca tagtgcaatg        60
     cattcgcgcg ttcactcatg cactcatgca ttcatgcamt cgctcattca aattttatat       120
     cttgcaaaat cacctcacgc tgtacgttca aatattaatt accattttgt aaaaaggccc       180
     tagtaaatat tcttttgaaa acatcttgtt tgattcatca cgaaca                      226
//
ID   BEL-2_TrNi-I repbase;    DNA;    INV; 5645 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5645
RA   Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1017-1017 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5643
FT                 /product="BEL-2_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPTTRSGSTQSKTAGNSSSSDWSMHTPSDTASSAATS
FT                 IASMSTLTKRTPTTSPKGSRAPVPQSKDATRRESTSAEAVRPAPLTHAAAK
FT                 EVEDSNPARQEGSHTTVQNPNRSVGIRTSSREGTLQQPDPGNPARDRDTMS
FT                 ARSSHRKRAEAQARLTVALREQEMAEARLRVAQAQLELVAAESEDEDGAGE
FT                 EIYERTHEVEQWFIQTSAGSSKEQRPVESQDKKSDIQKLAEAIGKLSGNSR
FT                 DVIAPKYIELPYFNGACEEWLAFRRTYEDTAASFSAAQNLARLRRAIQGKA
FT                 KEAVQSLLFTAEKPHEVIKGLESRFGRPGALALAELEKLKNLSKVSESPGE
FT                 ICVFASRVKNAIETIKALKKPQYLSSPETLKAIVDKMPPTMKFRWFAYHRG
FT                 RRDEDIQELLLIEEFLDIEADMCGDFAPPEVPSDKKSSRRPVHTVQEESQD
FT                 KKFKKSCPVCEEEHFATECKKFKEASIDKKWDIIKKAKICFKCLRFKHLRS
FT                 NCKAPVCRKCRRWHHTILHSDKPEVQKSSNKEGASEEKVASVHNNKDEDRA
FT                 YLKIVPVQLYGPKGQVRVLALLDEGSTVTLLDASIAEKIGAAGSREALTIE
FT                 TVGGKVIRKDSSQKINLKIKGVHRRDKKTITVRTIDDLKLSEQRVNRSTVK
FT                 NCLHLKAIERQLLYDAERPKLLIGQDNWGLIVTRRLKKGKPTEPVASLTHL
FT                 GWVLHGCETGSNAVVNFTHYGRATSEGEDIEEVVREHFQLESLGIQNRLPS
FT                 NDSDRRALETLEKTTKRLPSGQFEAGLLWKKEGETLPNNYNQAFRRLVNIE
FT                 KKLDREEDVKEYYEKQIQTLIENGYAEKAPVTTTKGKTFYLPHFAVVHPVK
FT                 RKPRIVFDAAAKYEGRSLNDALLAGPDLLQSLFGVLLRFREGPVAVMADIQ
FT                 DMFLRVKVKEXDRDCLRFLWRGSRRTGKPEEYRMSSIIFGAASSPATAIYV
FT                 MNKNAEDFKITHPEAVKAIRRNHYMDDYLQSFSSTAEAKKISREVKEIHSK
FT                 ASFHLKGWASNDSRVLSEVEDTTKEDSLQLTKEEKTLGLRWLVKEDSLAFN
FT                 IGLRNTPKELLEDRRAPTKREVTSAVMSTFDPMGFAAPVLIQGKKLIQDIW
FT                 RTKIGWDEAINDEQREAWMKYLRETSALTKLRIPRCFSPRNRRGELHTFTD
FT                 ASEEAYAAVVYWRTIEPGGNVHISMIAGKARVTPTKPVSIPRLELQAALLG
FT                 SRLTNTIEEEMELEVSKKTYWTDSSTVLQWIKAEPRKFKTFVANRLAEIED
FT                 TTKPRDWRWVPTKENPADDATRGTPVEFSHHSRWFQGPSFLRQPEEEWPVQ
FT                 EFRIMGSLPEEKGGQQVMAAKGEDESFIDVKRFSSWERLLRVTARVVAFAC
FT                 LLLKRTRKAAATAVRRDDEPWRPQRRARKKTQAAGPPPSKEAQRRLYIPIQ
FT                 DDHLKRAEALLIKISQSESFAPEIKRLKARTPLESASKLKKIDVYIDDEGI
FT                 IKLRSRTMKFRDGGVRKMNPVILDGRQRIAQLIIRSYHEKFLHGNTATVMN
FT                 EVRQKYWILGLRATLKAVAHGCQWCKLRKSTPAIPPAGDLPSERLQHHQFP
FT                 FACTAVDYFGPMQVTIGRRVEKRWVALFTCLTTRAVHLELAPSLSASSMIM
FT                 ALRRMAARRGTPRTLFSDNGTNFVGANKELEAAALEKGIKWKFIPPGSPNM
FT                 GGAWERLVRTVKTALAVVLNERSPPEEVLHTLMTEVEHIVNSRPLTPVSMD
FT                 PNDAESLTPNHFLLGRSCGAMAPGEFEDTELVGKATWRTAQRLADHFWRRW
FT                 VKEYLPLLMPRKIDGRTTVDPKEGDVVLIVDAALPRNSWPRGEVIKVYPGP
FT                 DGRTRVLDVRTSGGVLRRPTRRVVVLVPAAASSHPEDGVLRTAGE"
XX
SQ   Sequence 5645 BP; 1718 A; 1304 C; 1578 G; 1044 T; 1 other;
     tttttggtcc tttgtcgagc cggattgggt tataatacga agatgccaac tacaagatcg        60
     ggttcgacgc agtctaagac tgcaggaaat agttcgtcgt cggactggag tatgcacact       120
     ccgagcgata ctgcaagctc cgccgctacg agtatcgcaa gtatgtcgac gctcacgaag       180
     agaacgccga caacaagtcc gaaaggaagc cgggcccccg taccccagtc caaggacgcc       240
     accaggaggg aatcaacgtc agcagaggcg gtgcgccccg cccccctgac acacgccgcc       300
     gcgaaagagg ttgaagattc aaaccccgca cgtcaagaag gcagtcatac cacggtgcag       360
     aatccaaatc gaagcgttgg aatcaggacg tcgtcgagag aagggactct gcagcagcct       420
     gatcctggga acccggcccg ggacagggac acaatgtctg ctcgctcttc gcataggaag       480
     agagcagaag cgcaagcaag attgactgtg gcgttacggg agcaagaaat ggcggaagca       540
     cgactaaggg tggcgcaagc acaactagag cttgtcgccg ctgagtcgga agatgaagat       600
     ggagctggtg aagaaatata cgagcgaact catgaagtgg aacagtggtt catccaaacc       660
     agcgccgggt caagcaagga acagaggccg gtcgagtcac aagataagaa gagcgacatt       720
     cagaagctgg cagaagcaat aggcaagctg tccgggaatt cgcgtgacgt catcgcgccg       780
     aagtacatcg aacttcctta cttcaatgga gcctgtgaag aatggttggc gttcagaagg       840
     acgtatgaag atacggctgc ctccttcagc gccgcacaga acctggctcg cctcagaaga       900
     gccatacagg ggaaagcgaa agaagcagtt cagagtttac tgtttaccgc tgagaagcca       960
     catgaagtaa tcaagggatt ggaatcaaga tttggaagac ctggtgcact ggctttagct      1020
     gagttggaaa aactgaagaa cttgtcgaaa gtgagcgaaa gtcctggcga gatctgcgtg      1080
     tttgcaagtc gagtcaagaa cgctatcgag acaatcaagg cattgaagaa acctcagtac      1140
     ctcagctcgc ctgaaacatt gaaggctatt gtagacaaga tgccacctac catgaagttt      1200
     cgttggttcg catatcatag gggtcggaga gatgaagaca ttcaggaact tttactcatt      1260
     gaagaattcc tggatattga agccgacatg tgtggggact ttgccccacc tgaagttcca      1320
     tctgataaga agagttcaag aagacctgta cacactgtac aagaagagtc tcaagataag      1380
     aagtttaaga agtcgtgtcc cgtttgtgaa gaggaacatt ttgcaacaga gtgcaagaag      1440
     ttcaaagaag cgtcgattga taagaaatgg gacatcatca agaaagcgaa gatttgtttc      1500
     aagtgtcttc gcttcaagca cttaagaagc aactgtaaag cgcctgtctg caggaagtgt      1560
     cgaagatggc atcacactat cttacactcg gacaagccag aagtacagaa gtcaagcaat      1620
     aaggaaggcg catcagaaga gaaagtcgcc tcagtccaca acaacaagga tgaagacaga      1680
     gcatatttga agattgttcc ggtgcaactc tacgggccca agggacaagt tcgtgtgctc      1740
     gcgttgttgg acgaagggtc gaccgtcact ctcttagacg cgtcgatagc cgagaagatt      1800
     ggagctgcag gaagtcgcga agcactcaca atcgaaaccg tcggcgggaa ggtcataagg      1860
     aaagatagct cacagaagat caacttgaag attaaggggg ttcacagaag ggataagaag      1920
     actatcactg ttagaaccat cgacgatctg aagctatctg aacaaagggt caacaggagc      1980
     actgtaaaga attgcctaca cttgaaggca attgaaaggc agttgctcta cgacgcagag      2040
     cgaccgaagt tgctgattgg gcaagacaat tggggactca tagtcacaag aagactgaag      2100
     aagggcaagc caactgaacc cgtagcctca ctcacacact tagggtgggt gctacatggg      2160
     tgtgaaaccg gatcgaacgc cgtagtcaac ttcacgcact acggcagggc aacgtcagaa      2220
     ggcgaagaca ttgaagaagt cgtccgggaa cattttcagt tagagtctct ggggattcaa      2280
     aatcgactgc catcaaacga cagcgataga agagcattgg aaaccttaga gaaaacaacg      2340
     aagcgactac caagcggtca attcgaagca ggcctcttgt ggaagaagga aggcgagacc      2400
     ctacccaaca actacaatca agcgtttcgt cgcctggtca acatagagaa gaagctggat      2460
     cgtgaagaag atgtcaagga atattatgag aagcagatcc agacattaat agaaaatggt      2520
     tacgccgaga aggcccccgt aaccaccact aaggggaaaa cattctactt acctcacttc      2580
     gccgtcgtac acccggtcaa gaggaagcca agaattgttt tcgacgcagc agccaagtat      2640
     gaaggaagaa gcctcaacga cgcattgcta gcaggacctg acttgctgca gtcgctattt      2700
     ggggtgctac tgcgctttag agaaggccca gtggcagtca tggctgacat acaagacatg      2760
     tttcttcgtg tcaaagttaa ggaagawgac cgggattgtt taaggttcct ctggagggga      2820
     agcagaagaa caggcaaacc ggaagagtac aggatgtcgt cgataatatt tggagcagcg      2880
     tcatcacctg cgacagctat atacgtgatg aataagaacg cagaagactt caagatcacg      2940
     caccctgaag ctgtgaaggc aataagaaga aatcattaca tggatgatta tcttcaaagt      3000
     ttctcgtcaa ccgccgaagc aaagaaaatt tcaagagaag ttaaagaaat tcattcaaag      3060
     gcaagctttc acctgaaggg atgggccagt aacgactcaa gagtgctgtc agaagttgaa      3120
     gatactacaa aggaagactc tctgcagctt acgaaggaag agaaaactct gggtctaaga      3180
     tggctcgtca aagaagatag cctagcattt aacatcggtc ttcgcaatac accaaaggag      3240
     ttattggaag acagaagagc gccaactaag cgtgaagtga caagcgccgt gatgtcaaca      3300
     ttcgacccaa tgggctttgc ggcgccggtc ttgatacaag ggaagaaact tattcaagac      3360
     atttggcgaa ctaaaatagg ctgggatgag gcaatcaacg atgaacaaag ggaagcttgg      3420
     atgaagtatc taagggagac atcggcgctg acgaaactta ggattcctcg atgtttttca      3480
     cctcgtaata ggagagggga attacacacg ttcaccgatg caagtgaaga ggcttacgcc      3540
     gcagtcgtct actggaggac aatcgagcca gggggaaacg ttcacatctc tatgatcgcc      3600
     ggtaaagcaa gagtgacgcc gacgaaacca gtctctatcc cacgactgga gctgcaagct      3660
     gcgctacttg gcagcaggct gacgaacacg attgaagaag agatggaact cgaagtatca      3720
     aagaaaacat actggaccga ctctagtaca gtactgcagt ggatcaaggc ggagccaaga      3780
     aagttcaaga cgttcgtagc caaccgactt gctgaaatcg aagacacgac aaagccaagg      3840
     gactggagat gggtaccgac caaagaaaac ccagcagacg acgccacaag agggacgccg      3900
     gttgaattca gtcaccactc aagatggttt caaggtccgt cgtttcttcg tcaaccagaa      3960
     gaagaatggc ctgtacaaga attcagaata atgggtagct taccagaaga aaagggcggg      4020
     cagcaggtga tggcagcaaa gggtgaagac gagtcattca tcgatgttaa gaggttctca      4080
     agctgggagc gactactccg cgttacggcc agggtggttg cttttgcatg cctcttattg      4140
     aagaggaccc gcaaggcagc cgctaccgcc gtgcgccgag acgacgagcc ttggcgacct      4200
     caaagaagag cccggaagaa gactcaagcc gccggtccac cgcctagcaa ggaggcacag      4260
     aggagattgt acatacccat acaagatgac catctgaaga gggccgaagc attacttata      4320
     aaaataagtc aaagtgaaag cttcgcgcct gaaataaaaa ggctaaaggc aagaactccc      4380
     cttgaaagtg caagtaaatt gaagaaaata gacgtgtaca tcgatgacga aggaatcata      4440
     aagctacgaa gtagaactat gaagtttcgc gacggaggag taagaaaaat gaaccctgtc      4500
     atcttggacg gaaggcagag aatcgcgcaa cttatcataa gaagctatca tgagaagttt      4560
     ctacacggta acacagcgac cgtgatgaac gaggtccgac agaagtattg gattctcggt      4620
     ttaagggcaa cattgaaggc agtagcacac ggctgccaat ggtgcaaact aaggaagagt      4680
     acacccgcca taccgccggc gggcgacctg ccgagcgagc ggctgcaaca tcatcagttc      4740
     ccgttcgctt gtacggcagt cgactatttc gggccgatgc aagtaacgat cggcaggaga      4800
     gtcgagaagc ggtgggtggc attgttcacc tgcctcacca ccagggctgt tcacctggag      4860
     ttggcgccat ctctcagtgc cagctccatg attatggccc tgcgacggat ggcggcaaga      4920
     agagggactc caagaacgtt gttcagcgac aacggcacga acttcgtcgg ggcgaacaaa      4980
     gaattggagg cggccgcact tgaaaaggga atcaagtgga agtttattcc cccgggcagc      5040
     ccaaacatgg gaggcgcctg ggagaggctc gtgcgcaccg tgaagacggc gttggcggtg      5100
     gtgctcaacg aaaggagccc accagaagag gtgctccaca cgctgatgac tgaggtcgaa      5160
     cacatcgtga actctagacc tctcacccca gtcagcatgg accccaacga tgcagaaagt      5220
     ttgaccccaa atcacttcct gctggggaga tcgtgcggag caatggcgcc gggagagttc      5280
     gaggacaccg agctggtcgg caaagcaacc tggagaacag cgcaaaggct cgccgaccac      5340
     ttttggagac ggtgggtgaa agagtacctg ccgctcctca tgccgcggaa aatcgacggg      5400
     cgaacaaccg tcgaccccaa agaaggcgac gtcgtattga tagtcgacgc cgcgctaccc      5460
     cgcaactcgt ggcctcgagg tgaagttatc aaagtctacc ccgggccaga tggaagaacg      5520
     agagtactgg acgtgcggac atcaggagga gtgctgcgcc ggccaaccag aagggtcgtc      5580
     gtgctcgtgc ctgcagcagc atcgtcgcat ccagaggacg gcgtgctacg caccgcgggg      5640
     gagaa                                                                  5645
//
ID   BEL-2_TrNi-LTR repbase;    DNA;    INV; 938 BP.
XX
AC   .
XX
DT   14-SEP-2021 (Rel. 27.02, Created)
DT   14-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-2_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-938
RA   Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1037-1037 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 938 BP; 272 A; 170 C; 211 G; 285 T; 0 other;
     tgttagcgac gatgacaact acgtacacct aaattaagta tgttatagtt tttgtttgat        60
     taacgtttca agtttcttaa agttaatgag tttgtttacg tttgcaatca gttataggtg       120
     tacgtaggta tatattgaaa cattgtttat gttatgttaa ggtttgtttg caaatgttta       180
     ggactatatg atgtgtgcta gggacttaga ctatggttaa gaactaagat ttagttacct       240
     aagtgttgtc catatactat ttaaccctga aaaacctaga aataggtttt atttagaaac       300
     aattattgat aggagttgtt tcataagtac ccgcaattat ttagaatttg ttgtaactaa       360
     ctctcggtag gtggcgacgc acgtagatta gttttaaaag tacctacata aaattcactt       420
     tttagttacc gattctgtca cagggggcag caccatgttg ttgtcatgat taaggtgcgg       480
     gtttttgcaa ttatctttat tttaagacat tattttatgt aaataaaggt ataaggatag       540
     ggttaaatag ggtaaaaagg tctagaacat ttgtaaggga cgcctaactg ccgggataag       600
     cctctggaag ggtttcttgc cggccagcgc gggaacgcgg cacgccatga ttggctggcg       660
     ccaaatacgc gcccccgtga ttggtcggca gtcactataa atagagggcc ctcccggcgg       720
     ttaggcattc cacatccagt gagcatccgg aaaggaacct tggaagacta ggaagactag       780
     gaagcctaga aatactgggg acaataaaga actatgtaag tactgcacaa ttatctttta       840
     ctgcgttgaa cccctgcttc tttgtatccc gccagtgccc ggtccgaacc cattggacca       900
     acggaccacc aacaaataca gtccactcgc tggcaaca                               938
//
ID   BEL-3-I_NVi repbase;    DNA;    INV; 5597 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: internal portion -
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5597
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 746-746 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(404..1612,1616..5482)
FT                 /product="BEL-3-I_NVi_1p"
FT                 /translation="MDALVVQWNNQTEQLRDLLTDLSIVIKSKSAVLHECK
FT                 ARMEEIVMHYKTLGNLFYKLDAVHKEAEREKFNDLKNFYFKVTAYIRSAED
FT                 KQSKTLGSDTTVPLGHSTLLDISRFSGLPTIDLPKFDGRLEKWNAFKTTFR
FT                 NEMVRLNIDNITAFHYLKKSLVGAAANSLHILDPSDGSYDEAWRLLGTQYE
FT                 HVRLIAASHIDAILYYPVITEVSHRSLKDMETSVRQHLADLKSLKVVPSDY
FT                 FVIRTLERALPTNIKDKWIKRMSIDAIPDLESFFRFLQETSNYLYAQEGES
FT                 KDAKASAKRTVAQSEKGTKFRRGNGQARALVTSSSISCYYCSGEHTIYRCS
FT                 SFAALSVQQRWDAVRTKKLCRKCLRTHEGKCESRNCKKCDKDHNTLLHEER
FT                 KTDSSGKKPLGVGVLSTVSRALQSQLMMSAVVLIRDADGAYIEARALLDTC
FT                 ANANFMTADLAKRLRLPTRPCSIPIGAINDLRTTTKHCVDAQFKALHSDFN
FT                 KRLTFLTVPNITSVTPEEPFPRDSIRLPKNIRLADPQFHLPRQVDILIGSG
FT                 ATLSMLSIGQVNLSREGSELYLQKTQLGWVIVGGIDTDKISTVSCHLSQLE
FT                 KQLVQFWSLEKCSSPVEQADDRLECEKWYVDTTVRLSDGRYMVRLPFRKKD
FT                 PVLGDSRAQALKRFRGLERRCSRSSGMMEEFSRVFQEYLDLGHMSLVVDEN
FT                 DSEYYLPFLIVVKILSLTTKFRVVFDASAKSSLGVSLNDLLHVGPTIQDKL
FT                 YVHLVRFRSHRYVLTADIEKMYRQILIHPEDRRYQRIFWYRDGKLQVYELN
FT                 TVTFGVSSAPYLAIRTIHRLADDESAQYPRAAEILKRDMYVDDLLTGSDSL
FT                 DEIMKARDEIITVLKHGGFNIRQWASNHNHALDNLDEKVLSLAPDGEDAVL
FT                 KTLGVSWASKRDELAIVVKPVEIPPNVTKRVILSEIAKIFDPVGLVGPVGL
FT                 HAKWIMQECWKEKVSWDESVPQSLFTLWMDFASQLSSLSSVSAPRHVVCVN
FT                 PSRIEIHGFSDASKKGYGACLYARSTDKDEKITVRLICSKSRVAPLKEQTI
FT                 PRLELCGAVILVRLLLETLPALEFSIDRIVLWSDSTIVLHWLRKSPQDLKL
FT                 FEANRVREIQELGERASWRYVPTQHNPADALSRGQLPKEFLRNETWFTGPT
FT                 WLRQTEASWPANIVESSPDIPGLKKGVCLFVDSAKDRMFLSRFSKHRMMLN
FT                 VVAICLRWLPSGRQYRGEPITVAEKRDAETRVFRSIQQDAFSDSIACLTKG
FT                 IQVKGSHIAALNPCLDANGVVRVGGRLKNADIPIASKHPILLPSRNHVTDL
FT                 IIREAHESNYHSGVQSTLFYLRQRFWLIDAKNQVRHVIRECVTCIRHKPPP
FT                 IHCKMADLPTARVTESHVFSHVGVDFFGPLSIKEKKRYNRTALKAYGCVFV
FT                 CMATKAVTIEITSDLTTEGFLGAFARFVGRRGIPQHVYSDNGTNFVGANNQ
FT                 LRELFALLNSEEFKSKVNAKALSLDIQWHFNPPLSPHFGGLWEAAVKSFKH
FT                 HLKRVVGGQLLTFEELYTLVIEIEAILNSRPLWSISADPNDPIALTPAHIL
FT                 IGRPITVLPSADLTSIPDNRLSIWKFITKARQDFWKRWHLEYLHELQQRQK
FT                 WHDSTGELRKGMVVILIDKNQPCTQWQLAVVQEVHPGTDGLARVATVRTSR
FT                 GTLKRNITQLCPLPTSSTEEAE*"
XX
SQ   Sequence 5597 BP; 1437 A; 1346 C; 1382 G; 1432 T; 0 other;
     tggtgcctcc tgtgaggtgt ggatcgacag ttcggccagt cagctaagga caaagggttc        60
     atcaaggttc cccaggtcat cgcatagacg tcttcccctg gggtcacctc tccagctgcc       120
     gcttcaaggt caacgcattg tcaacgcaac agaaaagata agtagcgttt atctttttca       180
     aagtgactct acgcgtgtgt gaatttcgaa cacagcgcgg cgtttgtttg acttcgcgcg       240
     taaacacgag gtcgcgcgtt gcggcgagcg gcaaaccgtt gttgtgccgg acgagcgaat       300
     tccgagaatc tgagcgcgtc gagacacgtg ctcgcgcttc agtccgtata agggatttcg       360
     gtatttatta tttagcgtgc gtattcactg actactaggc aacatggacg ctttagtggt       420
     acagtggaac aaccagaccg agcaacttag ggatttattg acagacctgt cgatagttat       480
     taagtcgaaa tctgctgttc ttcacgagtg taaagcgcgc atggaggaaa tcgtcatgca       540
     ctacaagact ctcggtaact tattctataa attagatgca gtccacaagg aagccgagag       600
     ggagaagttc aatgacttga agaatttcta cttcaaggta accgcgtaca tccgatccgc       660
     cgaggataag cagagcaaga ctctcggtag cgatactacc gttccgttag ggcattcgac       720
     tcttctagac atctctcgat tttctgggtt gccgactatt gacttgccga agtttgatgg       780
     tcgtctagaa aaatggaacg cgttcaaaac gactttcagg aacgagatgg tgcgattgaa       840
     tatcgacaac atcacagcgt tccactatct aaaaaagtcg ttagtcggag cagccgctaa       900
     ttcgctccac atcttggatc caagcgatgg cagctacgat gaagcctggc gacttttggg       960
     cacgcagtac gagcacgttc ggctcattgc tgcttctcac attgacgcaa ttttatatta      1020
     tcctgtcatc acggaggtct cccatcgatc gctaaaggac atggaaactt cggtccggca      1080
     gcatctggca gacttaaaat ctctcaaggt cgttccttcc gattacttcg tgatccgcac      1140
     tctcgaacga gcattgccca ctaacatcaa ggacaaatgg atcaaaagga tgtccatcga      1200
     tgcaattccc gatctcgagt cgtttttcag atttttgcag gaaactagca attatctata      1260
     tgcccaggaa ggggaatcca aggacgccaa ggcttcagcc aagcggacgg tggcgcagag      1320
     cgagaaaggg accaagttcc ggcgaggtaa cgggcaagct cgagcgcttg taacgagctc      1380
     gtccatttcc tgctactatt gtagcggcga gcatacgatc tatcggtgtt cgtcgtttgc      1440
     tgcgttgtcc gtccagcaac gatgggatgc tgtgaggacg aaaaaactat gtaggaagtg      1500
     cttgcgaacg cacgaaggca aatgcgaatc ccgcaattgc aaaaaatgcg acaaggatca      1560
     caatacgctc ttgcacgagg aacgaaagac agattcctca ggcaagaagc cgtgactagg      1620
     cgtaggagtc cttagcaccg tgtccagggc tctccagtct cagctcatga tgagtgctgt      1680
     tgttttgatt agagatgccg atggggcgta catagaggct cgcgcgctcc tggacacgtg      1740
     tgcaaatgcg aactttatga ccgcggattt agctaaacga ttgcgtctcc ctactaggcc      1800
     ttgctcgatt ccgatcggag caattaacga cttgcgaact accacgaaac attgcgtcga      1860
     tgcccaattt aaagcgttac attcggactt taataagcgt ttaactttcc tcaccgttcc      1920
     caacataact agcgtcactc cggaggaacc gtttcctcgc gattcgatca ggctacccaa      1980
     gaacatcagg ttagcggacc ctcaattcca tctccctcga caagtcgaca ttttaattgg      2040
     ttctggagca acgttgtcca tgctttctat aggtcaagtt aacttgtcta gggaaggaag      2100
     cgagttatat cttcagaaga ctcagctagg atgggtgatc gttggtggta ttgacaccga      2160
     caagatttca acggtgtcgt gtcatctttc tcagttagaa aagcagctgg ttcaattttg      2220
     gtctctggaa aaatgctcca gtccggttga gcaggctgac gacaggttag aatgcgagaa      2280
     gtggtatgtc gacaccacgg ttcgactgtc tgacggacgg tacatggtga gattgccgtt      2340
     tcggaaaaag gacccggtac taggggactc gagggcgcaa gctctcaagc ggttccgggg      2400
     attggaacgg cgatgcagcc gttcgtccgg catgatggaa gaattcagtc gtgtctttca      2460
     ggaatatctc gatttgggtc atatgtcttt ggtggtcgac gagaatgact cggaatatta      2520
     tcttccattc ttgattgtcg ttaagatttt gagccttact accaagtttc gagtcgtttt      2580
     cgacgcatcc gctaagtcgt cgttaggtgt gtctttaaac gatctgttgc acgttggacc      2640
     tacgattcag gacaaacttt acgttcatct agtaaggttt cgatcgcata ggtacgttct      2700
     cactgctgac attgaaaaga tgtatcggca gatacttatc catcccgagg atcgccgata      2760
     ccaacgcatt ttctggtatc gcgacgggaa actacaggtg tacgagttga acacagttac      2820
     gtttggcgta tcttctgctc catatttagc gattcgaact attcataggc tcgcggacga      2880
     cgaaagcgcg caataccccc gagcggccga gattctcaag agggatatgt atgtagatga      2940
     tctgctgaca ggctcagatt ctttagatga gattatgaag gcgcgtgatg agataatcac      3000
     cgtcttaaag catggtggat ttaacatccg gcaatgggcc tctaaccata accatgcatt      3060
     agataattta gatgagaagg ttctgagctt ggcaccagat ggcgaggacg cggttttaaa      3120
     aacattaggc gtttcctggg cctctaaacg cgacgaattg gctatcgtag tcaagcccgt      3180
     agaaatcccg cctaacgtaa ctaaacgcgt aatcttgtcg gagattgcga agattttcga      3240
     cccagtaggt ttagtaggac cggtaggttt gcacgcgaag tggatcatgc aggagtgttg      3300
     gaaggagaaa gtttcttggg acgaatcagt tccacagagt ttgtttacgc tttggatgga      3360
     cttcgcgagt cagttgtcgt ctctctccag cgtttctgca ccacgccatg tagtttgcgt      3420
     taatccctcg cgcatagaaa ttcacggttt cagcgatgcg agcaaaaagg gctacggcgc      3480
     ttgcctgtac gctaggtcca ccgataaaga cgaaaagatc actgtacgat tgatctgctc      3540
     caaatctaga gtcgcccctt tgaaagagca gactattccc cgtttagaat tatgcggagc      3600
     cgtgatcctt gtaagacttc ttttagaaac tcttccagct ttagaatttt ccattgaccg      3660
     gatcgtttta tggtccgatt ccactatagt cttacattgg ttacggaaat ccccgcaaga      3720
     tttgaagcta ttcgaagcta acagagtacg cgaaattcaa gaattaggag agcgcgccag      3780
     ttggcgatac gtccctaccc aacacaaccc agctgacgct ttatcccgcg ggcaactccc      3840
     gaaagaattc ctgcgaaacg aaacgtggtt taccgggcct acctggctac ggcaaacgga      3900
     ggcttcatgg cccgcgaaca tcgtcgaatc gtctccggat atacccggat tgaaaaaagg      3960
     agtctgtctc ttcgtcgaca gtgctaagga tcgcatgttc ctatcgcgtt tttctaagca      4020
     ccgcatgatg cttaatgtcg ttgcaatatg cttacgatgg cttccttcgg gccgacagta      4080
     ccgaggagaa cccatcacgg tcgcggagaa acgcgatgct gaaacccgcg tgtttcgaag      4140
     cattcagcag gacgcgtttt ccgattcaat tgcatgcttg acgaagggta ttcaggtgaa      4200
     ggggtcgcat attgcggcac ttaacccgtg tttggacgcg aatggagttg tacgtgtggg      4260
     aggacgtctg aagaatgcag atatccctat agctagtaag caccccatac tattgccttc      4320
     aaggaatcat gtcacggatt tgatcatccg tgaagctcac gagtcgaact accactccgg      4380
     tgttcaaagc actcttttct atttgcgaca acgtttttgg ttgattgacg caaaaaatca      4440
     ggttcgtcat gtcatccgcg agtgtgtcac gtgtattaga cacaagcccc ctccaattca      4500
     ctgcaagatg gcagatctcc cgaccgctag ggtcaccgaa tctcacgttt tttctcacgt      4560
     aggcgtagat ttctttggtc ccctttccat taaagagaaa aagcgatata atcgtacagc      4620
     cctcaaggcg tatgggtgcg ttttcgtatg catggccaca aaagcggtga ccatagagat      4680
     aaccagcgat ttgaccaccg aaggtttcct aggcgcgttc gctagattcg taggacgtag      4740
     aggtattccc cagcatgtat actccgacaa cgggaccaat ttcgttgggg ccaacaacca      4800
     gcttagggaa cttttcgcac tcctcaattc agaagagttc aaatctaagg tgaatgccaa      4860
     agctctttcg ttagatattc aatggcattt taacccgccc ttatctccgc attttggtgg      4920
     tttatgggag gccgcggtaa aatcatttaa gcatcatctc aaacgcgtag tgggtgggca      4980
     acttctcaca ttcgaagagc tctatactct cgtgatagag atagaagcaa ttttaaattc      5040
     tcgacccctc tggtcaatct ctgccgaccc caatgaccca atagcgttaa ccccagctca      5100
     tattctgata ggtaggccta ttacagttct gccaagcgct gatttaacat ctattccaga      5160
     taatcgactg tccatttgga agttcatcac caaagcccga caggacttct ggaagcggtg      5220
     gcatttggaa tatctccacg agctccagca gcgtcaaaaa tggcatgact ctactggaga      5280
     actacggaaa ggaatggtcg tcatcctcat cgataaaaat cagccttgta cgcagtggca      5340
     gctggcagtc gttcaagagg tgcacccggg aaccgacgga ctcgctcgag tcgccaccgt      5400
     tcgaacttca cgagggactc tgaagcggaa catcactcag ctgtgccctc ttcccacgtc      5460
     ttcaacggaa gaagctgaat gaattatata tatttacact cacatacata cacactcaat      5520
     cacatgtaca accgtcgaat gtacaccctc tcgaacgatg atttcgtttg ctcgtgttac      5580
     tcgcaacggg gggagaa                                                     5597
//
ID   BEL-3-LTR_NVi repbase;    DNA;    INV; 795 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: long terminal
DE   repeat - consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-795
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 747-747 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 795 BP; 160 A; 249 C; 183 G; 203 T; 0 other;
     tgttccgtcg agacccgagg tgtaagttcc gccgtgaaaa cggtgtcgag cgaactcagc        60
     gaggtcgacg tagagcatgt ggctccatct cccgtgctcg agttgaacaa gcggagtcgc       120
     gacttgccgc gctcgccggc agcgccgccg gcctcgtgtc gcgcgcggcc ggacgagcgc       180
     cgagtcagtt gacgataaga cgccaagctt gacagctcgt gcagtcaagc tagcgaacga       240
     tcgaacgaca ctttggctct tgcgaatccg tccgtacgtc catcgagtgc ttctggtgct       300
     ggtgcttgtg ctactctctc tctctctctc tctctctctc tctctctatc tctctctctc       360
     attctctcta aatctctcta aatctctctc ctttgtctct ttcgctgcct gctactcgcg       420
     ttcggctcgc gcccggttcc gcgaatcgta tctcgcgcgc gtcgaaacgt gcaagtcggt       480
     agaactgcgc taccgacttg agtcagtgga actgcgccac ggacacgaag cgaagattct       540
     ctctgagaat cgcacgaaca cgacacacac acgaacacga cacacgttct tctttttctt       600
     cgcagcttgt aagaacttcg agaggggttt tatgcctcac ggctttcccc tctcaatttg       660
     agcgtgatta aatattctcg attttcgctc aatcgacttc tttatttctc ccacacctca       720
     ctccttgcga actcgaacac acacacaaaa aaagcgggaa tattcgcctc agaatattcc       780
     gcgcgcgaca attca                                                        795
//
ID   BEL-30_AA-I repbase;    DNA;    INV; 5285 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_AA_;
KW   BEL-30_AA-LTR; BEL-30_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5285
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  601435  606719.
XX
CC   'CGTGT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1372..3384
FT                 /product="BEL-30_AA-I_1p"
FT                 /translation="MVAQVPLEPQQKSVVLPTAVIRVQGFDGGLLQVRALI
FT                 DSGFEASLISEACIKKLGLLRCNGKVMVSGLGQQAAGTTRGMAKLVIANRF
FT                 TDECVLQTSAYILGKLTSTLPTQHCSIHPSLLDKQIQENLADPAYHQPGPI
FT                 DVILGSDVFLALLKPGQVKDNGGVPVAQNTIFGWIVSGNQAIYSSSVQGNI
FT                 SIINLHAELDINRTLRLFWEQEEVPKPSQLTPSELAATELFRSSLTRDGNG
FT                 RFIVRLPFDDSKPALGESLTSAIKRLRSMERRFRQDEEFHALYSEFRSEYL
FT                 ALGHMEEVPPDELEVETSKCFYLPHVKTESTTTKLRVVFYAVVSLNDRLLA
FT                 GPDVNQDLFSVFLRFRTHQVAFSADVEKMYRQVVVHPTDRDFQRIVFHERE
FT                 DQPIRHYRLCTVTYGTKCAPYLAIEAMKQAAREYQPVYPEAVQRIELDTYV
FT                 DDFLSGVRNVQQARIMKNQVMEILESAGFHLRKWTTNCPELLQEEFEGDQA
FT                 PVDVKLAEQTNSVKALGIQWLPTEDTFSFKVTLKPNRVNTKRQILSDSCKL
FT                 FDPFGWLSPVTIRVKILFQQLWLTELSWDDRLPPAVETAWLEIKESLQQVE
FT                 QIRIPRFAPNFNGTIELHGFADALEMAYAAVVYAKGRNEAGDIIVNLLVAK
FT                 TRVAPIKQVSLPRLELNASVIH"
FT   CDS           3387..4484
FT                 /product="BEL-30_AA-I_2p"
FT                 /translation="MESIKQAFSHLEVEPWAYTDSSIVLQWLSAHSRKWKS
FT                 YVAYRTSAILEVLPRDRWIHVRSEVNPADCASRGLAPSELVTHPLWWHGQD
FT                 ELKTEVEHWKQVPVEETEDEEVLEPRRVKVLHAAAVAIRTNYDIEMRLLER
FT                 RSNYTLIVRTLAYVNRFLMAIRAEDANLEPGLSPNEIYDAKAQLARAAQYA
FT                 SYKQELDLLQKGKELSAKHKLSALHPFLDSQGTMRVGGRLQNASYSYDVKH
FT                 PIILPGNHRVTELLLRDLHLRNLHAGPTLLTATVNQQFRPSGGGSLNSPRM
FT                 YSVRATKRKDGDTADGQPTGVSGDGHSSIRPRRRGLRRPSEGSCLLRSGRE
FT                 DDQRLHRSLRMYGDQGGALGGRK"
XX
SQ   Sequence 5285 BP; 1392 A; 1334 C; 1428 G; 1131 T; 0 other;
     ttggtccttc gtcgtcggat tccgcgaatc gcgatggaaa aactagtgaa agtacggaac        60
     gcgcaaatgg tgcaagtggt cggggaggag tcctacagcg aggcaacgga acggctcgac       120
     cagctcaagg aacttgttgg aaacttccgc aagacacagg caagcatcga agagctcctt       180
     gacgacccgg aagcggttgc ctcggtgcac aatattcgtg aagagttcaa cggagcctac       240
     tttagtgcaa aagacatcct ggagaagtac atcgcggata ataatccgga tgaaaccaat       300
     tccgtatcga gtagtggaac gatcgtcgat aacgatctcc acgaggcgat gaaaatgttg       360
     ctcgtctcgt cgcgaacaac aaccaagcaa acctcgatcc agcagcggat atggtgtcga       420
     atcgttcacc tttcctgagt gtgcggcttc catcgatcag cgtgccgacg ttcagcggtg       480
     atcggaaaag ctggaggtcg ttcagacatt ttcgaatcga ccatccacag ccggaacgat       540
     ctgaaagatt cgatcaagat gcagtatctt gtgtcgtacc tcgatggcag tgcgaagcag       600
     ctagtgagtt ctttcccgat tttcgacgca aactaccagc aggcatggga ggcgctcacg       660
     aactactacg ataagaaaaa atataccgtt ttcgctctta ttcgtgagtt cgtggaccag       720
     ccggcggtga tcaccgccac atccggaaat cttcgcaagc tagtcactac tgctgatgag       780
     gtggtgcgac aattgaatgc gctcggggag gaatataaca cacgggatcc gtggcttatt       840
     tacctcctgc tggaaaagct ggaaaaggaa agccgttcat tatgggcgcg gtggatcatc       900
     gaagaagaaa acccttcctt cgacgatttc atcaagttcc tggacaaccg atgtgatgcg       960
     ctggaaacct gcacagcttt cacgaagaag aagacagtag aagcagtcaa gaaggagcca      1020
     gcgaagaagc cactcagtga gaagaagatg cagtcgctgc acacagctgc agcaggggaa      1080
     aagtgctcga aatgctccaa ggagcatccg ttgtttcagt gcagtgaatt taaagacatg      1140
     gacattcaga gcaaacgcga actagtgaag aacgcgagat tgtgctttaa ctgccttcgg      1200
     ggatcgcaca ccgcgaagtt ttgagtttct aaagcagtgt gccgaaacga gaactgtaag      1260
     cagcggcatc atacactgct atgtgagcgt aaagctgaag atgacaggaa gaaaccagtg      1320
     gtaaacagtg aatcaaacca gcaacagaag agtgaagcta ccatcaacgc aatggtggcg      1380
     caggtaccgt tggaaccgca gcagaagtcg gtcgtgctac ctactgctgt catccgggta      1440
     cagggattcg acggcggtct gctgcaagtt cgcgctctca tcgactcggg cttcgaagca      1500
     tcattgatct cggaagcttg tatcaaaaag ctcggcctac ttcgttgcaa cggaaaggtg      1560
     atggtttccg gtttgggaca gcaagcagcc ggaacaaccc gtggtatggc gaagctggtg      1620
     attgccaacc ggttcaccga cgagtgtgtg ttgcaaacaa gtgcctacat cctggggaag      1680
     ctcacctcga ctcttcctac acagcactgc agtatccatc caagcctttt ggacaagcaa      1740
     atacaggaga accttgctga tccggcatat caccagccgg gtccgatcga tgttatattg      1800
     ggatctgacg tctttcttgc tctcctcaag ccagggcaag tcaaggacaa cggaggtgtt      1860
     cctgtggcac agaacacgat cttcgggtgg attgtgtcag ggaatcaagc catctactcg      1920
     tcgagtgtgc aaggcaacat ctcgattatc aatctccatg ctgagttgga catcaatcgc      1980
     accttgcgtt tgttttggga gcaggaggag gttccgaagc caagccagct tactccttct      2040
     gaactagcag ccactgagct gttcaggtcc agtctcacac gtgatggaaa tggacgcttt      2100
     atcgtgcgac ttccgttcga cgattcaaag ccagcgctgg gtgaatcact cacttcagcc      2160
     attaaacgat tgcggtcgat ggaaaggcgt ttccgacagg atgaggaatt ccatgcgttg      2220
     tactcggagt ttcgcagcga atacttggct ctgggacaca tggaggaggt gccgccagat      2280
     gagctggaag tagagactag caagtgtttt taccttccac acgtcaagac ggaaagtacg      2340
     acgaccaaac tgcgggttgt cttctacgcc gttgtttcgc tcaacgacag actcctggca      2400
     ggacccgacg tcaaccagga tcttttctcg gtgtttctgc gtttccgtac ccaccaggtg      2460
     gctttctcgg cagacgtgga aaagatgtac cgccaggtgg tggtgcaccc gacagaccgt      2520
     gacttccaaa ggattgtgtt tcacgaaagg gaggatcaac cgatcaggca ctatcggttg      2580
     tgcactgtga catacgggac caagtgcgcc ccgtatttag caatcgaagc catgaagcag      2640
     gcagcccgtg agtaccaacc agtgtacccc gaagccgtcc aaagaatcga gctcgacacc      2700
     tacgttgacg attttctgtc tggcgtacgc aacgttcagc aagcaaggat aatgaagaat      2760
     caagtcatgg aaatacttga gtccgctggt ttccacctgc ggaaatggac tacgaactgt      2820
     cccgaactac tacaggaaga atttgagggc gatcaagcac cggtcgacgt caagcttgcg      2880
     gagcagacaa actcagtgaa ggcactcgga attcagtggc tgccgacgga ggacactttc      2940
     tctttcaagg tcaccctgaa accgaacaga gtgaacacca aaaggcaaat actatctgat      3000
     tcgtgcaagc tattcgatcc attcggatgg ctctccccag taaccataag agtcaagatt      3060
     ttgttccagc aactttggct cacggaactc tcgtgggacg accggctgcc tccagcagtc      3120
     gaaacagcgt ggcttgagat caaggaatct ctacagcaag tggagcaaat acgcatccct      3180
     cgattcgcac ccaacttcaa tgggacaatc gagctgcatg gatttgcaga tgcgttggag      3240
     atggcgtacg ctgcagtggt gtatgccaaa ggaagaaacg aagctggtga catcatcgtc      3300
     aatctcctgg tcgccaaaac cagggtagct ccgattaagc aggtgtcatt gccaaggttg      3360
     gagctcaacg cctctgttat ccactgatgg aatcaatcaa gcaagcattc agccacttgg      3420
     aggtggaacc ttgggcgtac acagatagca gcatcgtact ccaatggttg tccgcccatt      3480
     ctcgtaaatg gaaatcgtat gtggcctacc gtacgtctgc aatattggaa gtgctcccgc      3540
     gcgaccgctg gattcatgtg cgaagtgaag tcaatcctgc agactgtgcc tcacgaggtc      3600
     tcgcgcctag cgaacttgtg acacacccgc tctggtggca tgggcaagac gaactgaaaa      3660
     cggaagttga acactggaag caagtacctg tcgaagaaac cgaggatgag gaggtattgg      3720
     agccgcgtcg agtgaaggtt ctgcacgccg cagctgtggc gatccgtacc aactacgaca      3780
     tcgagatgcg cctgttggaa cgacgatcga attacacact gatcgtgcgc acacttgcgt      3840
     acgtgaatcg attcttgatg gcaatcaggg cggaggacgc gaacctcgaa ccaggacttt      3900
     cgccgaatga aatctacgat gcaaaggcgc agctagctcg agctgcacaa tatgcttcat      3960
     ataagcagga actggatctg ttgcagaaag gtaaggaatt gtcagccaaa cacaaattgt      4020
     ctgcccttca ccctttcctg gacagccaag gaacaatgcg agtgggagga cgattgcaga      4080
     atgcatctta ctcatacgac gtcaagcacc cgatcatact tcctgggaac catagagtaa      4140
     ccgagttgtt gttgcgagat cttcatctgc gaaatcttca tgctggtccc accctactca      4200
     cagctacagt caatcaacaa tttcggcctt caggcggcgg ttcgctcaac agtccaagga      4260
     tgtactcggt gcgtgcgact aaaaggaaag acggcgacac agctgatggg cagcctaccg      4320
     gtgtctcggg tgatgggcac tcgagcattc gcccacgtcg gcgtggatta cgccggccct      4380
     ctgaagggtc atgcctcctg cgttcggggc gtgaagacga ccaaaggcta catcgtagtc      4440
     ttcgtatgta tggcgaccaa ggcggtgcac ttggaggtcg caagtgacct ttcaaccaat      4500
     atgtttatat gtgcactgaa gcgattcatt tcacgaaggt ctcatccgaa cgagatttgg      4560
     tcggattgcg gaacgaactt cgtgggaacc gaccgttggc tgaaggaaat tcaaactgca      4620
     cgagagaccc acaacgaagc aactgatcga tttctcacca acttgattat taagtggtgt      4680
     tcaacccgcc ttcagcgccg caccgtggtg gcatctggga ggcagcggtc aagagcgcca      4740
     aaaagcacct agtggcagtc ttgggcaacg aagcagcaac gtttgaagaa ctctcaacaa      4800
     tcctggcaca ggtggaagcg tgcctcaact cgcggccgct atgtccactt tcaaccaatc      4860
     ctgacagctg tgaagcgctg accccaggac attttctggt tgggcagtcg atgaacctca      4920
     tcccggagcc tgatgtccgt cacattccaa tgaaccgtct ggataagtgg caacttttac      4980
     acaagcacac aacggaaatc tggcgtcgtt ggcgagatga atatcttgct aatctgcaac      5040
     cgcgaagcaa atggcgaaca acggaggaga acctagaaaa gaatcagctt gtattggtca      5100
     agaacgacaa tgccccgccg actcaatggg agttggcccg tattgctgag ctgcacccgg      5160
     actcgacagg agtcgtccgg acggttaccc tgcggcgtgg tcaagcggag tactctcgcg      5220
     gcccatccag aagatctgcg ttctaccaac ggattgaggc agcagagcct caaggcgggg      5280
     gtgga                                                                  5285
//
ID   BEL-30_AA-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_AA_;
KW   BEL-30_AA-I; BEL-30_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-262
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  601173  601434.
XX
SQ   Sequence 262 BP; 60 A; 64 C; 53 G; 85 T; 0 other;
     tgtttccgtg tatgttccac ccagccctgt cgacctcacc tgcgtcgacg acacctgtca        60
     gttttgcgcg ccgacttcga ttggaaactt tttcctgaga aaatgtgctt ttgtcaccat       120
     tttccataac tgtaccaagt accgaagaga aaggacgcaa taaaagttga gtttgagtaa       180
     ttctttattt tcggttcaat tttacgttta ttccggttcg aattgcccgt gttttcgtcg       240
     gtccagtcca aggtccaaaa ca                                                262
//
ID   BEL-30_AnFu-I repbase;    DNA;    INV; 5649 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5649
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 704-704 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..5573
FT                 /product="BEL-30_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and DUF5641."
FT                 /translation="MSTKKKFFVDNDKGACRLCTEPDDADAHMVQCDDCDR
FT                 WFHLKCAKLTKLPTDEQPFLCVKCSLRPCVSIPTPSTSKGKEQGLANSDEG
FT                 LLVKEVTRVLKELGAPRPSEKNVETLLRRESLMTLPTFDGKPKDWPRFKKT
FT                 LLETTKQGRFTQLENLHRIERALRGEAEKNVRALMLDPLNVAAIIDRLEES
FT                 FGRPEVVYRELVKDVLKVRLDGPSKIPELAETIDNLVTNMTALNCTNYLND
FT                 PRLLDDIMIKMPLFYQLEWIDYTELRAVDHVTINDLNDWFKLMARKMRRVV
FT                 KGTGREHVMLHEAEFKQQPQHSERQINIKKGFNCPDCGNNHSLTQCSSFKE
FT                 KSIGDKWDTVKAAKLCHGCLRFSNHQIQNCKLWKGCGVNGCTKRHHPLLHK
FT                 TENEPSQKSHHVQHHDTTNEKKRIYYQITPVTLRNGPLSVKTYAFLDPGSS
FT                 LTLLDEEVAGLLELEGVSDPLRMKWTGDIQACDMTSRRVKLSVMGANKMEH
FT                 LIEEVRTVQNLNLPMQTINVDKLKHEYPHLKNVPVNSYTNVRPTMLIGLKH
FT                 SHLIVPLNKKEGLCNQPIAIETKLGWMIFGNEEIISNDIERLFIMREEESM
FT                 DEMLQKYFSTEDFGVKLTAKQVCSDDDEKALSTIRETMKYEDGRYEIGLLW
FT                 KSGSINFPNSYANALGRLKSLERQLQKQPELKEWAIQTFKEYEAKGYLRKL
FT                 TPAELLSPNQRLFYLPHFIVINRNKPKPKPRIVFDAASKVEGVSLNSQLLP
FT                 GPDALTSLFGILLRFREGKIAVAGDIKEMFHQVKVRPEDQQAQCVLWRGCN
FT                 DEKPPEIYTMQVMTFGATCSPACAQAVKNENALRHKQSHPKAYDAVLNQHY
FT                 VDDYIDSFSTESEARETTEQVIAVHDKASFFIRNFISNSESLLRVIPAERR
FT                 QCGESVVYFEEKDSVYDKILGVYWNVVSDCLGYNIKQQSLRTDILSSKKNP
FT                 TKREVLSFVMSIYDPLGLLSHITIQGRILLRSIHRAMTDWDEKIPEDLGIK
FT                 WCEWLNLVKEANRFEVPRCVLPMNPKSIELHTFVDASEEAFAACVYLRSFN
FT                 GQKYTTHLLAAKARVSPLKNLSIPRLELQAAVLGVRLTHLVRQELRLTIGK
FT                 VTYWSDSQTVLGWIVNRKRKYHQFVAHRVSEILETSAMDQWRWVPTKENPA
FT                 DRATKIMAPDDMWKFGPPFLFEDESMWPQSHIKPTAEEERVMHHAEGCKLL
FT                 DEDYYSDWRRLVRHGVILRKFVNFLKDKTSFSTTTKTSDVEAIKTIMYIRA
FT                 QRECFPTEYSALLDENSVSKQSMLNKLVPFLDDKGIMRSKGRLENLGVLPP
FT                 GTRCPIILPQKHRVTKLIVRDYHEKSLHQADNVVIGNLRQEFWVINVRAVL
FT                 NNVKRCCQWCILHACKPVAPMMAPLPQSRANPYTPPFLHTGVDYFGPFEVA
FT                 IRRSTEKRWGVIFICMSTRAVHLELAKKLDTDSFLVCLKNFQHRRGKIGHL
FT                 YSDNGTNFVGADKELSHLVADINDRMGKEAALKYNIEWHFNPPSAPHFGGI
FT                 WERQIQTIKKGLRQMMDEWRLRKPSPETLVATLIEIEFILNSRPLTHIPVS
FT                 NDEEEILTPFHFLIGRSGSAVPPLALTTSSIDTNQYKQVQHHSKIFWDKWK
FT                 REYLPTLLKRDKWTNKVEPLKEDDMVVLTDDNATPGKWLKGRIVKVHRAAD
FT                 DQVRSVEVRTVNGVLKRPVVKVALLDVRQKEHPVNANGKRQTEKGGYSGLA
FT                 KVKRNK"
XX
SQ   Sequence 5649 BP; 1788 A; 1251 C; 1434 G; 1176 T; 0 other;
     gtggtggctc cagagaggaa cctagcagac gttaggttcc acgacgctta gtgaacacta        60
     ggcacgcgga tacgtaccgc gaactaagag gagacgagac gcagaagtgt gcacggacgg       120
     tgtacagcat cgctttcgga gctggttgag cacggacggt gcgaccagac cagcgtgtga       180
     catcgtttat tccggcaggc gaccaagcgt caagtctcga aaactttcga ggcgcggcag       240
     tgtgcacgga cggtgtacga cattgctttc ggagctggtt gagcacggac agtgcagcca       300
     gaccagcgtg cggcatcgtt gattccggca gacccagcgt acaagctcgg aagtgagaat       360
     aagaaggttg acattttagt caatccgtga tcgagatgtc gacaaagaag aagttcttcg       420
     tggacaacga caaaggagcg tgcaggctat gcacagagcc tgacgatgcc gatgcccata       480
     tggtgcagtg cgatgactgt gaccgatggt tccatcttaa gtgtgcgaag ctcaccaaac       540
     taccaacgga tgagcaaccg tttttatgcg tgaaatgctc gttacgtccc tgtgtaagca       600
     ttccgacgcc gtcaacgtcg aaggggaagg agcaagggtt ggccaacagc gatgaaggac       660
     tgctggtgaa agaagtaacg agagttttga aggagctagg tgcaccaagg cctagcgaaa       720
     agaacgtcga gacgttacta agacgagaga gccttatgac tctgccgact ttcgacggta       780
     agccaaaaga ttggccaagg ttcaagaaga ccttgctaga aaccaccaaa caagggaggt       840
     tcacccagct ggaaaacctt caccggattg aacgagcttt acgaggggaa gcggagaaga       900
     acgtcagggc gctcatgctc gatcccctga atgtagcagc cattattgat aggcttgaag       960
     aatccttcgg gagacccgaa gtagtctacc gagaactggt aaaagatgtt ctcaaggtac      1020
     gattagatgg tccatcgaaa atccccgagc tagccgaaac gatcgacaat ctagtgacga      1080
     acatgacagc attgaactgt acgaactact tgaacgatcc gagattactc gatgatatta      1140
     tgataaagat gccattattt taccaactgg aatggatcga ctacacagag ctgcgagccg      1200
     tagatcacgt tacgatcaac gacttgaacg attggtttaa gctaatggct cgtaaaatgc      1260
     gacgggtagt caaagggaca ggacgagaac acgtgatgct acacgaagct gagtttaaac      1320
     agcaaccaca acattccgag cgacaaataa atattaagaa aggttttaac tgtccggatt      1380
     gtgggaataa tcactcattg acgcaatgca gttcattcaa agaaaagagt attggtgata      1440
     aatgggatac agtgaaagca gctaagttgt gccacgggtg tctccgattt tcgaaccacc      1500
     agattcagaa ttgtaagttg tggaagggtt gtggcgtaaa tgggtgcacg aagagacatc      1560
     acccgttact gcataaaacg gaaaacgaac cgagccaaaa aagtcaccat gtacaacatc      1620
     atgacacgac aaacgagaag aaaaggattt attatcaaat cacaccagtg accttacgca      1680
     atgggccttt atccgtcaaa acgtacgcct ttctcgatcc tggctcatct ctcacactcc      1740
     tagatgaaga agtagctggg ttgttagaat tagagggagt gtctgatcca ctgagaatga      1800
     agtggacggg agatattcaa gcgtgcgata tgacaagccg cagagtgaag cttagcgtga      1860
     tgggggctaa caaaatggag caccttatcg aagaagtaag aacggtgcaa aatctcaacc      1920
     tgcccatgca aaccatcaac gttgacaaat tgaaacacga atacccacat ctaaaaaacg      1980
     taccagtgaa tagctacact aacgttcgac caacaatgct gatcgggttg aaacacagcc      2040
     acttgatcgt tccattaaat aagaaggaag ggctatgcaa tcagccgatc gcaatcgaga      2100
     ccaagctcgg atggatgatt tttggcaacg aagaaatcat cagcaatgat atagaaaggc      2160
     tatttatcat gagagaagaa gaaagtatgg atgaaatgct gcaaaaatac ttctcaacag      2220
     aagattttgg cgtgaaacta actgctaaac aagtatgcag cgatgatgac gagaaggcgc      2280
     tgagcactat tcgggaaaca atgaagtacg aagacggaag atacgaaatc ggtcttcttt      2340
     ggaaatcagg aagcataaac ttcccaaaca gctacgcgaa cgcccttgga aggctgaaga      2400
     gtctagaaag acagttacag aaacaaccgg agttaaaaga atgggcaatt cagaccttca      2460
     aagaatatga agcaaaaggc tatttgcgaa aactaactcc tgcggagtta ctaagcccga      2520
     atcaacgcct gttctacctc ccgcatttta tagtgatcaa ccggaacaaa cccaaaccga      2580
     aacccagaat cgtgttcgat gcggcatcaa aggtagaagg agtgtcgcta aattcccaac      2640
     tactaccggg gccagatgcg ttaacgtcgc ttttcggcat cttgctcaga ttccgtgaag      2700
     ggaaaatagc tgtggctggc gacatcaagg aaatgtttca ccaggtaaag gtgagaccgg      2760
     aagatcaaca agcacagtgc gtcctatggc gcggatgcaa cgacgaaaaa ccacccgaaa      2820
     tttacacgat gcaggtaatg accttcggtg ccacctgctc accagcctgc gcccaagcag      2880
     taaagaacga aaatgctcta cgccataaac aatcgcaccc gaaggcttac gacgcagtac      2940
     tgaaccaaca ttacgtggat gactacatcg atagtttttc caccgaaagt gaagcaagag      3000
     aaactaccga gcaagttatc gcagtccacg acaaggctag cttcttcata cgcaatttca      3060
     tcagcaactc ggaaagtttg ctgagagtga tccctgctga aagacgccaa tgtggagaat      3120
     cagttgtgta tttcgaagag aaagacagcg tatacgataa gatcctcggg gtctactgga      3180
     acgttgtatc cgactgttta gggtacaaca ttaaacagca aagtcttcga accgatattt      3240
     tgtcctcgaa gaagaacccg acgaaaagag aggtcctaag tttcgtaatg agcatatacg      3300
     atccactagg cctactaagt cacatcacaa tccaaggaag aatactgcta cgatcgatcc      3360
     accgagcaat gaccgattgg gatgagaaaa tacccgaaga ccttggaatc aagtggtgcg      3420
     aatggctaaa tctagtcaag gaggcaaatc gatttgaagt accacgatgc gttctgccaa      3480
     tgaacccgaa atctattgag ctgcatacgt ttgtagacgc atcggaagaa gcatttgcgg      3540
     catgcgtcta tctcagaagc ttcaacgggc aaaagtatac gacacacctg ctggcagcaa      3600
     aagcacgagt aagccctctc aaaaacctgt ctatcccgcg tctcgagtta caggcagccg      3660
     tgctaggagt gcgacttaca catctagtaa gacaggagtt acgattgacg attggtaagg      3720
     ttacgtactg gagtgattca caaacggtac tggggtggat tgtgaaccgg aaaagaaaat      3780
     accatcagtt cgtcgctcat cgagtcagtg aaatcctcga gacctccgcc atggaccagt      3840
     ggcggtgggt gcccaccaaa gagaaccccg cggatagagc gacgaagata atggcacctg      3900
     acgatatgtg gaaattcggc ccaccatttt tattcgaaga cgaatcgatg tggccacaat      3960
     cacacataaa acctacagcg gaagaagaac gcgttatgca tcatgctgaa ggatgcaagc      4020
     tactggacga ggactattac tctgactgga gaaggctagt gcgccatgga gtaattttaa      4080
     gaaagtttgt caactttcta aaggacaaaa caagcttctc aacgactacc aaaacgtcgg      4140
     acgtggaggc tattaaaacg attatgtaca tcagggcaca acgtgagtgc tttccgacgg      4200
     agtattcggc attgctagat gaaaactcag taagcaaaca aagcatgctg aacaagctgg      4260
     taccatttct tgacgacaag ggaattatgc gttcaaaggg ccgactggag aacttaggag      4320
     tgttgccacc tggtacgcga tgcccaatca tcttaccgca gaaacacagg gtcacgaagc      4380
     tgatagttag agattatcac gaaaaatctt tgcatcaagc cgacaacgtt gtaattggca      4440
     atctgcgtca ggagttctgg gtgatcaacg tgcgtgcagt cctgaataac gtcaaaagat      4500
     gctgtcaatg gtgcatctta cacgcctgca agccagtagc accaatgatg gctcctttac      4560
     cgcaatcaag agccaaccca tacacaccac cattcctgca tactggcgtt gactacttcg      4620
     ggccattcga agtagccatt agaagatcga cggagaaacg ctggggtgtg atattcatct      4680
     gcatgtctac gagggcggta catttggagt tggctaagaa acttgacacc gatagtttct      4740
     tagtatgtct gaagaacttc cagcaccgac gaggaaaaat cggccatctg tacagtgaca      4800
     acggcaccaa tttcgtggga gcagataagg aattaagcca tctggttgcc gacatcaacg      4860
     accggatggg aaaggaagct gcgctaaagt ataacataga atggcacttc aatccgccgt      4920
     cagcaccaca ttttggcggt atttgggagc gccaaatcca gactatcaag aaaggactac      4980
     gacaaatgat ggacgaatgg agactgagga aaccgtcgcc ggaaacgtta gtggccacgt      5040
     tgatagaaat agagttcatt ttgaactcac ggccactgac acacatcccg gtgtctaacg      5100
     acgaggagga aatcctcact ccgtttcatt ttctcatagg tcgaagcggt agtgctgtac      5160
     cccccttggc actgacgact tcgagcatcg ataccaatca gtacaaacag gtccaacacc      5220
     actcgaagat attctgggac aaatggaagc gagaatacct gcccacttta ctgaagcgcg      5280
     acaagtggac gaacaaggtg gagccactga aggaagatga catggtggtc ctgactgatg      5340
     ataacgcaac cccgggaaag tggctgaaag gacggatcgt gaaagtgcat cgagcagcgg      5400
     acgaccaagt gcgatcagtg gaagttcgaa ctgtgaacgg agtattaaag agaccggtag      5460
     tgaaagtcgc gttattggat gtcagacaaa aggagcatcc ggtaaatgcg aacggtaaaa      5520
     gacagaccga aaagggtgga tatagcggtt tagcaaaagt gaaaagaaac aaataatagg      5580
     atagttagtt agcctatcgc ggttatttta gtaatccaac tacaagtagc cgcattacga      5640
     ggggaagga                                                              5649
//
ID   BEL-30_AnFu-LTR repbase;    DNA;    INV; 846 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-846
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 733-733 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 846 BP; 230 A; 184 C; 233 G; 199 T; 0 other;
     tgtcgctcag gctaaggttt gagagcgcca cgtttatagg gaggagctta actgcgtgag        60
     aaagtagtga gtgcctcaac agtagtgagt gcctccacag tagtgggtgc gtaagtgact       120
     atgagcggtg taagtgaaag gatgcgtgag cggtagagaa tcatgcgtat taagtataca       180
     ctagcgagcg cgctgagtgc aacggaagtg cataggctca acataaggat gtgagcttag       240
     catgcggaaa atgaaagttc aaatcctgaa ttttccagga aacaggatta ggcgcatttg       300
     aattattttt accacagatt aaggacgacg gaaacagtta agggaaaatg gaaatctttt       360
     tccgtgaagc aaattataac catcgctaca atttcatgta aatgtacgac gactaaacag       420
     aggaaaataa atcattagtt agtagcaagg agaaattgag tgcagcgaaa tcatttcaat       480
     ccgaatcttt tcacattcct cgcaagtctt ctaatccaat cgaaacccta cccgaggtaa       540
     ttttggttgg acactagtgg gcgttcaggc ggtggtcact ctcctctcct tcgcaaccaa       600
     ggtgctcgta ccgagcgttt cgacctgctg tgttcgacat cgtcagggtt ccccttctgt       660
     ccgcataggc ccccgcaagc ttggggcaac tagctagaag gcagtcgctg taaggcgcga       720
     atcctgtcgg tgaagacgcc gcagagcggc gacaatcgga gagcattctt gttgctcgga       780
     gtctgacggc accgggagac cagttacctt cgcggctggt cggtgctcgg cggaggccgg       840
     acaaca                                                                  846
//
ID   BEL-30_CQ-I repbase;    DNA;    INV; 6272 BP.
XX
AC   AAWU01042468;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_CQ_;
KW   BEL-30_CQ-LTR; BEL-30_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6272
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 213-213 (2011).
XX
DR   Genome; AAWU01042468; Positions    1450    7721.
XX
CC   Positions [5321-5878] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6271
FT                 /product="BEL-30_CQ-I_1p"
FT                 /translation="MSAPGVHNLTGYECVLCEEHSNADSQMVFCEKCQGFF
FT                 HLQCAGVTEADRDLSFTCKKCVGPGEKVDQTDDENDGATVVDDSKKADETL
FT                 PGKPDPSVLNKPNGRIEQEDAELQHQREMQQLQEAFENQLRREQEKRMMIL
FT                 RLERQMLEQKAALNAEFNKRKNELYDEFKHTAGEVEPEEGAVGGEIVPVND
FT                 HRGAFPKYSTPIKHPDVRTGKTEESSFPRPLGPKPLSTPAPNPFPWPEPSP
FT                 PAPASNPVPWPAPPPPAPAPNPAPAPNPAPAPNPAPAPNPVPAPNPGPAPN
FT                 PVPAPNPAPALNPAPAPNPAPAPNPAPAPNPAPAPNPAPAPNPAPAPNPAP
FT                 APNPAPAPNPAPAPNPAPAPNPAPAPNPGPAPNPAPAPNPAPAPYPDPVPP
FT                 IPEDIRNNRGDQQDPDFYGDRELTRAQIAARKGPFANLPVFTGRPEDWPMF
FT                 ISSFNNGNRACNWSNLENLGRLQTSIQGRALERVQTSLLYPESVPRVIETL
FT                 RLLYGRPEQLLHCLMQKARKAESPRMDRLSTIINFGVVVQQLCDHLVASGL
FT                 VDHLVNPMLIAELVEKLPDPTKVEWVRYKRQFAAVNLSTFADFLSERVSEA
FT                 TEATAYSEPQEERRPNRERHEKKPRGRENEGFLNTHLGSEQLSNQTKGDAS
FT                 GGRRPCRACNRTDHRLRFCDDFLKLAWDARMKIAEDWDVCLLCLNEHGQTR
FT                 CRFKGHCNVGSCKERHHPLLHPPSPTVPLSANCHVHNSEQQPVIFRVVPIK
FT                 VHHDGRSFEVVAFLDEGSSFSLMDSSVADQLKLEGTRKPILVKWTAGMSRM
FT                 ERDSRSVDLSISAADSQDRFLLRNVHTVQQLQLPNQKMQYSAVAARFKHLR
FT                 GLPIADCDNGPPQILIGLKHIHVYAPLESRIGNPGEPIAVRTQLGWTIYGP
FT                 QTGDDVVSGYTGHHAAGNLSDHDLQELLRRHFTLEDSGLAVAVLPVSAEDC
FT                 RARELLEKTTIRVGDRFQTGLLWRDDNPQLPDSFPMALKRMTELERKLAKN
FT                 PALQKNVDEQISEYQRKGYAHIATAKELSQAVPGKIWYLPLNVVLNAKKPE
FT                 KVRLVWDAAASVQGKSLNSALLKGPDLLTSLPTVLSRFRERPIAFGGDIAE
FT                 MYHQLQIQPCDKSAQRFLYRPTGSNQPVIYVMDVATFGSACSPCSAQYVKN
FT                 RNAEEYAEKYPDAVEAIVGSHYVDDYLDSTFTIGEAIKRASEVAFIHSKAG
FT                 FQLRKWVSNSPEFLQHFGVQGADQLVPLGTDKNGGMQRVLGMSWNTFDDVF
FT                 VFVTNLRDDLQPYLTEGKLPTKRILLSIVMSFFDPLGLWALFTIFGKIIIQ
FT                 DLWRNGCPWDQVLDETSAAKWFKWIALLPRVQAMTVPRCYFLGVKLSDYVN
FT                 LELHVFTDASEEAYGAVAYFRVWVYGKPKVSLVTGKAKVAPLQYMSIPRLE
FT                 LQAGTLGARMAAAIKANHTFPIRQTVMHTDSATLLSWIRSDHKKYKQFVAH
FT                 RIGEILSHTDVDDWQFVATKFNIADVLTKWGKHGPPLDGDSEWLGPEELFI
FT                 PEEDLVLRELPEPNVREELRAFYLFHEIEFASCLIDPSHFSRWKTMVRTVA
FT                 CVFRFITNLRRKQKKQPIHTLQATFNLERFVLGTESLVKVPLTRDEYQRAE
FT                 NHLWQAAQQEGFPDEKKIMLKNREQEQQKWHSIERSSPLHRLAPFLDEYGV
FT                 IRMEGRSAYAEFLPFEQRFPIVLPKGHDITNKLIDLYHRKFGHANRETVVN
FT                 ELRQRFYIQNIRAAVLKVMQTCLKCKNNKCQPAAPRMAPLPVQRLTPQLRP
FT                 FSYVGVDYFGPVVVTIGRRTEKRWICLFTCLVTRAIHMEVAHSLSSASCMM
FT                 AIRRFICRRGAPLEIFSDNGTNFQAASKELAQTVKRIELECADIFTDARTR
FT                 WNFNPPAAPHFGGVWERLVRSAKDAIKALHDGKKLTDEVLLTVLAEAEDMV
FT                 NSRPLTYMPQESADDEALTPNHFIRGLPAGERDEANSPTSSAEALRDNFKR
FT                 SQQLADMLWQRWLKEYVPTINHRTKWCTEQDSVKEGELVYLVDGNNRRTWV
FT                 RGIVERVILGADGRVRQAMVRTSKGVYRRPVAKLAVLECRSKSGQDLGPGP
FT                 ELREGE"
XX
SQ   Sequence 6272 BP; 1574 A; 1786 C; 1702 G; 1210 T; 0 other;
     aacttctcaa aaattagttg agatgagcgc acccggcgta cataacctca ccgggtacga        60
     gtgtgttctt tgcgaagagc acagcaacgc ggatagccag atggttttct gcgagaaatg       120
     ccaaggcttt ttccatctcc aatgcgctgg ggtgaccgaa gccgacaggg acctgtcctt       180
     cacgtgtaag aagtgcgttg gtccgggtga aaaggtcgac caaaccgacg atgagaatga       240
     cggagcaacc gtcgtggacg actccaagaa agcggacgaa accctgccag gcaagcccga       300
     cccgtcggtc ctcaataagc cgaatgggag aatagagcag gaagatgcgg aactgcagca       360
     tcagcgcgaa atgcagcaac ttcaggaagc ttttgaaaat cagctccggc gagagcaaga       420
     aaagagaatg atgattctcc gcctggaacg acagatgctg gagcagaagg cagcgctaaa       480
     tgccgaattt aacaagcgaa agaatgaact ttacgacgaa ttcaagcaca cggccggcga       540
     ggtagaacct gaggagggtg ctgtgggtgg agaaattgta cctgtcaacg accatcgtgg       600
     agcgttcccg aagtattcaa cccctatcaa acatcccgat gtaagaactg gcaagacgga       660
     agagagctca tttcccagac cgctggggcc gaaaccacta tcaacgcctg ctccaaatcc       720
     attcccgtgg ccagaaccat cgccaccagc gccggcttca aatccagtcc cgtggccagc       780
     accgccgcca ccagcgccgg ctccgaaccc tgcgccggcc ccgaaccctg cgccggctcc       840
     gaaccctgcg ccagctccga acccagtgcc ggctccaaat ccagggccag ctccgaaccc       900
     agtgccggct ccaaatccag cgccggctct gaaccctgcg ccagctccaa acccagcgcc       960
     ggctccgaac ccagcgccgg ctccaaaccc tgcgccagct ccgaaccctg cgccagctcc      1020
     gaaccctgcg ccggctccga acccagcgcc agccccgaac ccagcgccag ctccgaaccc      1080
     tgcgccggct ccaaaccctg cgccagctcc gaaccctgcg ccagctccga accctgggcc      1140
     ggctccgaac cctgccccag ctccgaaccc tgcgccggct ccatatcccg atcccgtccc      1200
     gccgataccg gaagacatcc ggaataaccg cggtgaccag caagatcctg atttctacgg      1260
     cgatcgcgaa ctgactagag cacagattgc tgcacgaaaa ggtccattcg ccaatctacc      1320
     agtgttcacg gggcggccag aggactggcc tatgtttatt agcagcttta acaacggcaa      1380
     ccgagcgtgt aactggagca atctcgagaa tctcggtaga cttcagacaa gcatccaagg      1440
     ccgagcgctg gagcgggtgc agaccagcct actttacccg gaatctgtcc caagggtgat      1500
     cgagacgctc agactgctct acggcaggcc ggaacaactg ctgcactgct tgatgcaaaa      1560
     ggctcggaaa gcggagtccc ctcgaatgga tcgcctttcc acgatcatca attttggcgt      1620
     agtcgtgcaa caactgtgcg accatctggt ggcctcggga ctggtggacc atctagtgaa      1680
     cccaatgctc atcgcggaac tggtggaaaa gttacccgat ccaacaaagg ttgagtgggt      1740
     gcggtacaag cgtcagttcg ctgcggtaaa tttaagcaca ttcgcagact ttctctctga      1800
     aagggtctcc gaagcgacgg aggccacagc ctactccgaa ccgcaagaag aacgacgccc      1860
     gaaccgagag cgacatgaaa agaaaccgag aggtagagaa aacgagggtt tcttgaatac      1920
     gcacctggga agcgagcagc tgtcgaatca aactaagggg gacgcatctg gaggtcgcag      1980
     accatgccgt gcgtgcaatc gaaccgatca ccgcctccgg ttctgcgacg atttcttgaa      2040
     gcttgcctgg gatgcccgaa tgaaaattgc tgaggattgg gacgtatgtc tgctctgcct      2100
     taacgagcac ggtcaaacgc gttgccgttt caagggtcac tgcaatgttg gaagttgtaa      2160
     ggaacgtcac caccccctct tacacccccc aagtccaaca gttccgcttt cagcgaactg      2220
     tcacgtgcac aattcggaac agcaacccgt aattttccga gtagtcccga tcaaggtcca      2280
     tcacgacggc cgctcgttcg aagttgttgc ctttcttgac gaaggttcgt cgttctcttt      2340
     gatggatagc agcgtagcgg atcagctaaa gctggaggga accagaaagc cgatacttgt      2400
     caagtggaca gctggtatga gcaggatgga gcgtgactca agatcggtag acttgtcgat      2460
     ctccgcggcg gattcccagg accggtttct gctgcgcaat gtgcacaccg tacaacaact      2520
     gcagcttccc aaccaaaaga tgcagtactc ggcagtggcc gcccgcttca aacacctgcg      2580
     tggcctgccc atagctgact gtgacaatgg tccaccgcag attctgatcg gtctcaagca      2640
     tattcacgtg tacgccccgc tcgagtcgcg aattggcaat ccaggagagc ccatagctgt      2700
     acggactcaa ctcggttgga cgatttacgg cccccaaact ggcgacgatg tagtgtccgg      2760
     gtatactggt catcacgccg cgggtaatct atcggaccat gatctacaag aactcctacg      2820
     aagacatttc acattggaag actccggact ggccgtcgca gtgcttcctg tatccgctga      2880
     ggactgcaga gcgcgagagc tgctagagaa aactacaatc cgagtcggcg atcgctttca      2940
     aacgggcctc ctgtggcgcg atgacaatcc acagctcccg gacagtttcc cgatggcgct      3000
     gaagcgcatg acagaactgg aacggaagtt ggcgaagaat ccggccctac agaagaacgt      3060
     ggacgagcag atcagcgaat atcagcgaaa aggctacgct cacatcgcta ctgcaaaaga      3120
     gttgagccaa gctgtgccag gcaagatctg gtatcttcct ctgaacgtcg ttctgaacgc      3180
     aaaaaagccg gaaaaggtcc ggcttgtctg ggacgccgca gcgtccgtcc aaggaaaatc      3240
     gctgaattct gcgctgctca aaggaccaga tctactgacg agcctgccca ccgtgttgag      3300
     tcgcttccgg gaacgtccca tagctttcgg tggcgacatc gccgaaatgt atcaccagct      3360
     gcagattcaa ccgtgcgaca aatccgcaca acgatttctt taccggccaa cggggtccaa      3420
     ccaaccggtg atttacgtga tggatgtcgc cacgttcggc tccgcgtgct cgccgtgctc      3480
     ggctcagtac gtgaaaaaca gaaatgcgga agagtatgca gagaaatatc cagacgcggt      3540
     ggaggcaatc gtcggcagcc actacgtcga cgattatttg gactcgacgt tcaccattgg      3600
     agaggcgatc aagcgagcaa gcgaagtagc atttatccac tccaaagctg ggtttcagct      3660
     acgaaagtgg gtttcgaaca gcccagagtt cctgcaacac tttggagttc aaggtgcaga      3720
     ccagctggtg cccctcggca ccgacaagaa cggcggtatg cagcgagtct tgggaatgtc      3780
     ctggaacacg ttcgacgacg tattcgtatt tgtcactaac ctgcgcgacg atcttcagcc      3840
     gtacctaaca gagggaaagt tgccgaccaa gcgaatcctg ttgagtatcg tcatgagctt      3900
     cttcgatcca ctcggattgt gggcgttgtt tacaatattc ggcaaaatca taatccagga      3960
     cctgtggagg aacgggtgcc cgtgggatca agtcttggac gagacctcgg cagccaagtg      4020
     gttcaaatgg atcgccctcc tacctcgcgt gcaagccatg accgttcctc gctgttactt      4080
     tctcggcgtg aagctgtcgg actacgtgaa cctcgaactc cacgtgttta cggacgcaag      4140
     tgaggaggct tacggcgcgg tcgcctactt tcgagtctgg gtgtacggca agccgaaagt      4200
     atcgctggtg acggggaaag caaaggtggc cccgctgcag tacatgtcca ttccccgcct      4260
     cgaactacaa gccggaaccc ttggagcccg gatggcagcg gcgattaagg cgaatcacac      4320
     ctttccaatt agacaaaccg taatgcacac cgattccgcg acgctgctct cgtggatccg      4380
     gtccgaccac aaaaagtaca aacagtttgt agcccaccga atcggagaaa tcctcagcca      4440
     cacagatgtg gacgactggc agttcgtagc aaccaagttc aacatcgctg atgtgctgac      4500
     caaatgggga aaacacggac cgccactgga cggcgacagc gaatggctag gtccggaaga      4560
     gctcttcata ccggaagaag acctggtcct gcgggagttg ccggaaccca acgtacggga      4620
     agaattgcga gccttttacc tctttcacga aattgagttc gcctcgtgcc ttatcgaccc      4680
     ttcccatttc tcgcgctgga agaccatggt aagaacagtt gcctgcgtgt ttcggttcat      4740
     caccaatctg cgccggaagc aaaaaaagca gccaattcac accttacaag ccacattcaa      4800
     cctggaacgg ttcgtgttag ggacagaatc gctagtgaaa gtccctctca cccgcgacga      4860
     gtatcaacga gcagagaacc acctgtggca agctgcacaa caagaaggtt tcccggacga      4920
     gaaaaagatt atgctgaaga accgcgagca ggagcagcag aagtggcatt ccatcgaacg      4980
     ttccagccca ctacaccggt tggcgccttt cctggacgag tatggagtta ttcggatgga      5040
     aggacgttcg gcctacgccg agttcttacc cttcgaacag cggttcccca tcgtgttacc      5100
     aaagggacac gacatcacca acaagctgat cgatctctac caccgcaagt ttggtcatgc      5160
     caatcgagaa acggtggtga acgagctgcg ccaacgcttc tacatccaga acatccgagc      5220
     tgcggttctg aaggtgatgc agacctgcct gaagtgtaag aacaacaaat gccaaccagc      5280
     agccccgaga atggcccctt taccggtgca gcgtctcact ccgcagctgc gtcctttcag      5340
     ttacgtaggt gttgactatt ttggcccagt agttgtgaca attgggagac ggaccgaaaa      5400
     gagatggatt tgcctgttta cgtgtctggt gactcgagca atccatatgg aagttgccca      5460
     tagcttgagt agcgcgtcct gcatgatggc gatcagacga ttcatctgcc ggcgaggtgc      5520
     acctctggaa atcttttccg acaacggcac taactttcaa gccgccagca aggagctggc      5580
     tcagacggtg aaacgcatag agctggaatg tgcagacatc ttcaccgacg caaggactcg      5640
     gtggaacttc aatcctcctg cggcgccgca ttttggtggt gtttgggagc ggcttgtaag      5700
     gtcggcgaag gacgcgatca aggctctaca cgatggaaag aagctgacgg atgaggttct      5760
     tctcactgtg ctggccgaag ccgaggacat ggtgaactct cggcccctca cctacatgcc      5820
     ccaagaatcc gcagatgacg aagcgctcac gcccaaccac ttcatccgcg gcctgcctgc      5880
     tggggaacgc gacgaagcca acagcccaac tagttctgct gaagctttgc gtgataactt      5940
     caaacggtct caacaactcg cggacatgct gtggcagagg tggttaaagg agtacgttcc      6000
     cactatcaac catcgtacga agtggtgtac cgagcaagac tcggtcaaag aaggtgagct      6060
     ggtgtacctg gtcgacggaa acaaccgcag gacctgggtt cgtggaatcg tcgaaagggt      6120
     catcctaggt gcagacggta gagtacgaca agcaatggtg agaacatcga aaggtgtcta      6180
     ccggcgtcca gttgccaagc tagcggtact ggaatgtagg agtaaatctg gccaagacct      6240
     tggtcctgga ccagagttac gggaggggga at                                    6272
//
ID   BEL-30_CQ-LTR repbase;    DNA;    INV; 533 BP.
XX
AC   AAWU01042468;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_CQ_;
KW   BEL-30_CQ-I; BEL-30_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-533
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 214-214 (2011).
XX
DR   Genome; AAWU01042468; Positions     917    1449.
XX
SQ   Sequence 533 BP; 167 A; 117 C; 103 G; 146 T; 0 other;
     tgttgacgcc gctgctaggc aacaccgcta aacgcaccgc gtcgagtcct acagagaagt        60
     gaggaagtaa acaatacccg agaaacgacc gctccggttg acagtggtga cagtgacgga       120
     ccagcggaag tgatttgaac acacacacac acatacacac acacacacac acatcatatc       180
     ttttgaacca agcagcagtg aaaccgcgag tagttcacga ttctttaatt ttgtaatttc       240
     cctacatttt cgggccgatt gcctttgatt agcttatttc cagtttcgca aacgtgagtt       300
     gattaattag acttaaattg ccacttgaat ttatttgtat ttaatgatac aggtacacgg       360
     agattgtagg agataaatga gatttgtttg gccgatctgg ttaggaagaa aaaccaacta       420
     atgtaagtcg ctactactaa aatgaagttc tttcctaaca tttatccaat aaatttcagt       480
     tttgagcacg actcaacctc tgctacaaaa agtttttcta ttcggccaca aca              533
//
ID   BEL-30_DTa-I repbase;    DNA;    INV; 5995 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5995
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5644-5644 (2021).
XX
DR   [1] (Consensus)
XX
CC   >99% identity to consensus.
XX
SQ   Sequence 5995 BP; 1782 A; 1448 C; 1190 G; 1575 T; 0 other;
     ttttggtggc ccatgagggg acccatccaa tcacgccttc tggaataatt atctactaat        60
     ctgttttcga attaattaat cagtttggat ctaaactttg tgaaatctgg cacatggtta       120
     taaattttcc attcgcaact acatataacc agcaaacggc agcacatgta taagtgctgt       180
     tacactatcg tcccatacgc tttaccctcc aactgcgctg ccctgccgat ccatcgcttt       240
     gccgaagtca acgtgggtta atttagatgc tggagagaag ctgtttcgct gccgaaatct       300
     atcacgtcgc atcccccaca ccttttcgtc aaacctggag cgacttcact tggacttcca       360
     gacttttcgt tcaatttcgt tacgtcacaa cttgaaaggg gtaagtgtcg ttgtggtgtg       420
     ttggtgagtt gacaaagtat tgagtacatt tttcagtgta taagagtaat acaatcaaag       480
     ctgaaacatg gcagcagata aagaccagga gcaggggcag gcatccagcg atgccagcct       540
     atcaaaccta catatacttc aagctgatat ttttgaacgt gttaaacaac tttatcaaaa       600
     ttttaaaaag gatagtcagt caagaaaaac taaaatctat tttcaaactc gtataaataa       660
     acttgaaaat ttctcaaagg aattcgacac caatcatcaa actcttttat tgaacggttg       720
     ctcacctgaa catgaatatt ttacctctca actagcagca aggtttgaag agtcttactt       780
     aacatattat tgcgagattg gagacgcctt cgagacccgg tttccaacag ttcccagcga       840
     cgctactcct agccattcta attcaacgat gcacaacacc accatgctac aagcgcctgg       900
     ctctacagtt caactaccaa aattaccagt acctagttat tctggcaagc tgactgaatg       960
     gccagccttt catgatgtct ttcaacaact tattcacgat aatggtgcac tttccagcat      1020
     acaaaaattc cactttctga agcaagcact cccagcggac cgagatcaag acgtgcatca      1080
     aatggacttg actgaagcga attatctcgt cgcctggagt ctcattgtta cgcgttataa      1140
     taatccccga ttgttattca tgcatcatat gaatacccta tatgagttgc catcaatttc      1200
     caaagaaagt tcagccgaac taaaacatat gttaaacgtt gccaacgttt gcatcaatga      1260
     gttcaaacgc ctcaacattg caattgccaa ttgcgatcat tggattgtgc atcatctcac      1320
     cactaagctg ccatcgcaaa ctatccaagc ctgggaacac agtcttggga gtacaaagga      1380
     aatcccaacc tttttcactt tggaatcatt tctcaacaac cgacttttta gcatcgatat      1440
     aattgaaggt cgcaaggttc cacctccacc acggcaacca caaggagtca acggcttcca      1500
     acgaaacgtc atcaaacatt caggcaacgc acaaaccagg atcagtagct gccatacttc      1560
     aggggttact accaactctg ttcgctgcgc tcattgcaat gaccaacaca tcttacgtcg      1620
     ttgtccagac tttttagcaa aggattcttt cgctcgcaaa cttattgttg accgcagtaa      1680
     ggtatgtctc aattgcctca gccccaccca ttctctgtca aaatgtaaca gcagcaaaaa      1740
     ctgtttacaa tgtggacaac gccatcacac tctcttacat ttcccaaccc aggtaaaggc      1800
     tagtgatgtc gcgcagtctg caggaaacat aactagtctc aactcacagg gtctgacagc      1860
     atctagcaac accacacagc tcatcagcgc gtcagcctca cattcaacac ctcatacgat      1920
     gattctcgca actgctctgg ttcgtcttca tagtaatgcc acaggtcagt cagcggtggt      1980
     ccgagccctt atcgatcatg gatcagaagg tacccttgtt acggaaactg tagtccaagc      2040
     gctagggctt ccccgatttc cagtctcagc agaaatatca ggggtaggag ggaattccac      2100
     caacaggtgc aaatatcgca ccgaatgtac tttaagctca actactaatt caggattcaa      2160
     gatgtgggtg gaaaatgcct tcgttttgcg taccctgact tctcctttac caaggacgaa      2220
     tctaactcta ccaacgtgtc cacatttaac tgggttggag ctcgccgacc caaattttat      2280
     gcacactaat agcatagatg tgctcctcgg cgtggacacc attccacaat ttatgatgag      2340
     tggaatcagg agaggatctt acgatcaacc aattgcccaa tgcacgcaac ttggttggat      2400
     catttttggc agaattacgc caaaacagac acacacgata tccatacaat gtcatcattc      2460
     taatctggaa actctagttc aaaaattctt cgaattggaa gcagtaagta caacccgtct      2520
     ctacactgcg gaagaacaat ggtgcgaaga ccactttaaa cgcactcata tacgccaacc      2580
     aaatggaaag tacatggtgc gcctaccatt taaaacctta tttgatccta accaaaccat      2640
     aggaaaatca aaacaaactg ccctaaatcg gtttcatttt ttacagcgaa aattccaaaa      2700
     gaaaccagat ctgtatgaac aatactcaaa ggtcatggag gaatacttcg agctgcacca      2760
     aataactgaa gccatcacct cagaagaaca gcatcgcctg gcggacaaag gaggctcaat      2820
     cagttatact gcatgcacat taccccatca tgcagttctg aaggcggaca gcagcaccac      2880
     aaaacttcga gttgtgtacg acgcctcatg caagacatca aatggaaaat cgctcaacga      2940
     cattctctgt ataggcccag ccttacaaaa cgaccttggt ggggtcattc tcaattggcg      3000
     atttttacaa tatgtctttg cggccgatat tcagaaaatg tatcgttgca tcgatgtaca      3060
     cccggaggat acacacttcc aacggattat ttggcaaagg gaaaacaatg ctataaagga      3120
     ttattgttta acaactgtga cgtttggaac agcatcagcc ccgtacacag ccattcgcat      3180
     catgcatcag atcgctcagg atgaacgaga tcaatttcca ttagcagaac atgttttacg      3240
     aaaagaaata tatgtggatg atttgcaaag tggacatgag acaattaagg gagcccttca      3300
     agttcgagat gatgtcatcg gggcacttca atcagctggt atggagcttc gaaaatgggc      3360
     agcaaatcat cccagtcttt tgaactctat tcctcctgag cacatgtcca attccaaaat      3420
     tttggaaatc gaaaaccaag agtccattaa aactttgggg ctatattggc accccaagga      3480
     agacttttat ggtttcaaat taaaatttac aattgatgaa attttcacta aacgatcaat      3540
     tcttgctaca gttgcacgtc tgtacgatcc tttaggtttc gttgctccag tcataatcat      3600
     cgccaaggtt attctcaaag aagtctggag catacgtatt caacaggctg atggcactcc      3660
     agcaggatta gcttgggacg caacggtacc gccagtaatt cagcacaagt ggaaagaata      3720
     ctgcaccaat ttacttaaaa ttgaatcact gagaataccc cgatggttac agtatttacc      3780
     cagcaccatc gcatccttgc agctgcatat cttttgtgat ggctcttcta tggcatacgc      3840
     agcgtgtgcc tatgtgcggg tccaacatac aaataactcg gtatacacgc atctcatagc      3900
     tgcaaagagt cgagtcacac ccacaaagcc gttgacaatt cctagagtgg aactatgtgg      3960
     agctgtactc gccgcacaac tgggtgactg gctctgcaag caaatagatc aaccaacgca      4020
     tcccatttcg acctatttct ggagcgacgc aacgatcgtt ctttattgga ttgcggggga      4080
     tcccttacat tggaaaacat tcgtagcgaa tcgtgtagga cgaattttgg agtccagttc      4140
     tgcatctcaa tggagacatg tgcccaccgg agataaccct gcagactgcg cgacgcgtgg      4200
     tctctatcca gatcaattag ctgcctatga tttatggtgg caggggcctt cttggctacg      4260
     actaccagaa tctcaatggc ctagcaaaat ctttgacatt cctgatagca ccaatctctc      4320
     gtgtgagcaa aaatcgcttt ctctacaaac ccacagctgc gttgagagaa atccaaactc      4380
     tttactcacg tcgttttcat cttacaacaa acttctgttt ataatggctt acgtacgacg      4440
     ctttattcac aattcacaaa cgcgcgtgga ctctcgacag agaggtccag ttaccgccca      4500
     ggagtttcag caggcactag ggcacattgt ccgactagtg caacatgaaa cgtttaaggt      4560
     ggagattcaa aaaataaaga caaaaacaca tttatctaga tcgaacaaat taagtcaact      4620
     ttccccattt ctagataacg aaggagtgct gcgtgtccga gggagattga aaaatgcatt      4680
     gcacctatcg ccgcatcaac gcacaccgat cattttgcca aaggatcatc attttaccga      4740
     acttgtcatt cgtaatgctc atctcaacac attacatggc gggatatcac ttacactggc      4800
     agtgacaagg caaacgtttt ggattcttaa tgggaaacag gcagttaaaa agattctgca      4860
     caaatgtgtt gactgcttca agcacagacc gaaggcagtc acgcagctca tgggagacct      4920
     tcccttacat cgagtgaacc caccaaagcg agcctttgaa gccacaggcg tggactatac      4980
     cggtgcgcta gaaatcaaag cgtcaaagtt tcgtggacac cacaaataca aggcatatat      5040
     tgcagttttt atatgcttgg cgacaaaggc agtccacttg gaagctgtta ccggattgtc      5100
     ttctcaggat tttttgtggg ctctacaacg ttttattggc agacgtggat actgccaaca      5160
     catctacagc gattgcggta ccaatttcat tggagcagat aaatccctaa acctttggca      5220
     tgaagagttt cgacaaagcg ttatcgcaac ggttattcca aaattaaccg ctcagcagat      5280
     tcaatggcat ttcaatccgc cacacagccc aaacttcggt ggattatggg aggcgaatgt      5340
     taaagcggtt aagacacact tacatcgcac gtgtaaaggg gcgctcatga cctacgaaca      5400
     actctcaact attttggttc aaatcgaagc ctgtttgaac tctcgcccac tttgcccgtt      5460
     gagctcggat atggaggatt tagcagtact gacaccggcc catttcttaa ttggcgattc      5520
     catgatggcg ctacctaatc catcagcttc ggataaatcg ttaaacgcac aattcttgga      5580
     aggacaaaga ctgcttcgaa ccttttggca tcgttggagc tcggattggc tttcacactt      5640
     acaatctcgt ccaaaatggc agcgggttga ggaaaacttg cgtttacacg acatagttat      5700
     tattaaagat gatcggcttc cgccaaatga atggaagctc ggtcgcatag tcgaattaca      5760
     tccaggatct gataatctca ttcgagtcgc atctattaag acggcatccg gaatttataa      5820
     acgctctttg tcgaaaatct gtccattgcc attagctact tattcagagg ctacggaata      5880
     aacattaatt acgtacatac tttgtccacc tctacatatc gtaatgacac ttatttcttt      5940
     acagcaaagt gcagaaattt ggtttaaata ctggactcag tatttggggg cggca           5995
//
ID   BEL-30_DTa-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-349
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5657-5657 (2021).
XX
DR   [1] (Consensus)
XX
CC   >100% identity to consensus.
XX
SQ   Sequence 349 BP; 123 A; 60 C; 66 G; 100 T; 0 other;
     tgttcggacg tttgctgtag ttgagagaac ataaacccac cactctgtta taaccgagtt        60
     ttatgtaaag ggagtcacaa gagagagaac gatcgacgat tcttttatgg gcatcgaaca       120
     gaagcagtca tcccagccgc tggtcgcgtt taataatcta atataataaa ttaaaattga       180
     taccattgtc agcattgaag attgtaaagt gaaaaaactg aattcgaagt aattgtagat       240
     aataaataga ccatccatga agtgcacctt ttagagttat aattttcaaa ttggtggaaa       300
     aaccccagag catctttgct catctttgac aatataaatt gtcacaaca                   349
//
ID   BEL-30_SiCu-I repbase;    DNA;    INV; 5756 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5756
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5004-5004 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..5440
FT                 /product="BEL-30_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MADVTNRKSHFVTLQRHKTIVDTYNDDTVTAEQVKSL
FT                 LERLELIWKKLEKAHDNIIAAIDATDENSINLQNTTIAPMEEMYLYIQAKL
FT                 YGFQRKFASTPAHTTTFKLPDMSLPTFDGKFEDWSTFQDLFKSSIHKNPSL
FT                 SGSQKLQYLKSCIKGDAANIIKSFVITDANYAEAWTLLEQQFDNKREIVHS
FT                 HVRRLINQPQIKTESPSALQHMVTTTMECLRSLKVLGRPTDEWDDVIVVMI
FT                 LDKLDVDTKAEWARTLRGTDPPILEEVLDFLQQHIRTLHAKGPVKPAVNTA
FT                 KQQQHHHQPGQQGRRINTHHTSVSKSSCQFCKGQHFMYLCEKLKEMTIDKR
FT                 QAAVRSTGVCINCLRPGHSVKDCQGRSSCQKCNKRHNTFLHADKTELSVNT
FT                 SSSSQQQDAASSKAHQSSSSSSVGIHTSSLSSSSTLLKTALVDVVDSSNTT
FT                 HTLRVFIDEGGEGCLIRESIMQQLGLTKEKANVTITGVGGKAVITSRWKAF
FT                 VRLHSRYNQSSIDVELYAVPKVTGSINNIPHGAYRNWSHIKGLQLADPHFN
FT                 SGGEIDILLGSNIAPYLLKPSLKKLDMYSPVAQDTIFGWVLVGNVAEPSSR
FT                 SSFIINSFRCDISTQLRRFWEIEEISSHHALSPEEQACERHFMNTHQRQSN
FT                 GRYILRLPFNDKQELLGDSRDQALRRFHSLEKRFQRQPQYKDAYIQFMREY
FT                 EQLGHMSKIPAAALNLKENFYLPHHFVLKEDSTTTKQRTVFDGSAKSSSGI
FT                 SLNDTLMVGATVQPDLYSLLLGFRYNKVALKADIAKMYRQFEVFEDDQDYQ
FT                 RILWREDSSQPITEYRLTTVTYGTSCAPFLATRALNQLAEDERSSYPDAAH
FT                 ALLTSTYVDDFLGTSASPATAVQLVNQLIQLTASGGMEIRKWCSNSPEVMA
FT                 AIPTHLREECNIASFDDPTDHSSVKALGIRWQPASDEFQFTVNVNLTSRIT
FT                 KRHLLSEIAKTFDPVGWLSPVTINAKLLLQKVWLEGSDWDSIVSSHLQEEW
FT                 SSYIKNLLQLEEVRIPRCIITSSPSSVEIHGFCDSSEACFASAVYLKCRYN
FT                 DGSSSVHLITSRTKVAPLKAVSLPRLELCGAHLLAETIKAVQTTFPHPHSL
FT                 YCWTDSMISLRWMSSVSRRWKTFVANRVAAIQGLVPPEHWHHVKGEDNPAD
FT                 MPSRGISTQDLLQSTLWWHGPSWLQQGTYPVSHQQCDDNEVVKEERAKKLA
FT                 CFHLANNSVHSTLFAAFSSFRKLCRVTAYFIRFVNFLKNKKLSVVRGAFTV
FT                 AEINNAKQKLIKWAQTVSLPEEFDQLEKTQQVSSSSKLKQLSPFIDVNGLI
FT                 RVGGRIQKANLPDTTRHPIILPHDHLITQLIITDCHLNHLHSGFTLTFAAL
FT                 RRQFWILRGRDTIRHFIRKCITCRRSRAATTQQLMGNLPVGRVTVSRPFLH
FT                 AGVDFAGPFPVKFKKGRHFEINKTYFAIFVCLATKAVHLEAVTSLSSEAFI
FT                 ACFERFVSRRGISSHLYSDCGTNFVGADRVLQQYLQQDQPKLQQQYANRGT
FT                 TWHFNPPSAPHQGGLWEAGVKSVKFHFHRVVGQQVLQLEQFQTLLCKIEAC
FT                 LNSRPLCALSADPSDADALTPGHFIIGEPLTNIPEPDVSGLKSNRLSDWEL
FT                 VRQLTQHFWQRWSTEYLTTLQQRFKWTMKRPNLQVGDLVVIADDQMPVAKW
FT                 KLGRVVAVHPGQDKLVRSATVQSASGTFKRPVTKLCPLITSNDN"
XX
SQ   Sequence 5756 BP; 1615 A; 1509 C; 1210 G; 1421 T; 1 other;
     ttttttggtc cttaccgagc caggatattg tcatcctagt gattgaatca gtgacaacaa        60
     cagttattta aaaaaaaaca ttcaaaagtg gaattttaac gttttaacaa ttttattttt       120
     tcgccagaac aagagtgaaa gtgtattgat catcagttcc agtgtcacgt tccttcttat       180
     cagttccagt atcacgttcc tgtttcatca gttccagtat cacgttcctg cttcagttcc       240
     tgcttcatca gtgacttggt ctcatctgtt cctgttcatc gttcatcatc cgtaatcaac       300
     aatggctgat gtgacaaaca ggaagtcaca cttcgtcacc ttacaacgcc acaagacaat       360
     cgtggatacc tacaacgacg acaccgttac cgcagaacag gtcaaatctc ttctggagcg       420
     ccttgagctt atctggaaaa agctcgaaaa ggcacacgac aacatcattg ctgcaattga       480
     tgcaactgat gaaaactcca tcaacttaca gaacacgaca attgcaccaa tggaggaaat       540
     gtacctgtac atccaggcca agctctacgg attccagagg aagtttgcta gcacccccgc       600
     acacacaaca acatttaaat taccagacat gtcgctgccc acctttgatg gtaaatttga       660
     ggactggtca acgtttcagg accttttcaa gtccagtatc cacaaaaatc catctttatc       720
     gggatctcaa aagcttcagt acctgaaatc gtgcatcaaa ggagacgcag ccaacatcat       780
     caaatcgttc gtcatcacag acgccaatta cgcagaagct tggaccctcc tcgaacaaca       840
     gttcgacaac aagagggaaa tcgttcactc ccacgtaaga cgcttaataa atcaacctca       900
     aattaaaaca gaatccccct cagctcttca gcatatggtc accacgacca tggagtgcct       960
     cagaagtctg aaggtcttgg gccgaccaac agacgagtgg gatgacgtca tcgtagtcat      1020
     gatccttgac aagctggacg tggataccaa agccgagtgg gctagaacgc tcagaggtac      1080
     ggatccaccc attttggagg aagtgcttga tttcctccaa cagcatatca ggaccctaca      1140
     tgctaagggc cctgtgaagc cagcagtcaa cacagcaaag caacaacagc atcatcatca      1200
     gcctggccaa caaggccggc gtatcaacac acatcacact tccgtcagca aaagttcctg      1260
     ccagttctgc aaaggacaac acttcatgta cctctgcgag aagctgaagg aaatgaccat      1320
     tgacaaacga caggcagcag tacgatcaac tggtgtttgt atcaactgcc tcagaccggg      1380
     acacagtgtc aaggactgcc aaggcagaag tagctgccaa aagtgcaata aacggcacaa      1440
     cacttttcta catgctgata aaaccgaatt atcagtcaac acgtcatcat catcacagca      1500
     acaggatgca gcatcatcca aagctcatca atcatcgtca tcgtcttccg ttggtataca      1560
     tacctcatca ttatcgtcat cgtcaacatt attgaagaca gctttagtgg atgtggtgga      1620
     tagcagcaat accacacaca ccctgagggt cttcattgat gaaggcggtg aaggatgtct      1680
     catcagagaa tccatcatgc agcagttagg ccttacaaag gaaaaggcca acgttacaat      1740
     tactggagtt ggaggaaaag cagtcatcac ttcaagatgg aaagcattcg ttcgcctcca      1800
     ctcgcgatac aaccagtctt ccattgacgt ggaattatac gctgttccaa aggtgactgg      1860
     gagcatcaat aacattcctc atggagctta ccgcaactgg agccacatca aaggacttca      1920
     gcttgcagac ccacacttca atagcggagg agaaattgac attctccttg gctccaacat      1980
     tgcaccatat cttctcaagc catctttaaa gaaattagac atgtactccc ccgttgcgca      2040
     agacactata tttggttggg tgcttgtagg caacgtggca gaaccctcat caaggtcatc      2100
     attcatcatc aacagtttcc ggtgtgatat cagcacccag ctccgacgat tttgggaaat      2160
     tgaagaaatt tccagtcatc acgccttatc accggaggaa caagcatgtg agcgtcactt      2220
     catgaacact caccaacgtc aatcaaacgg ccgctacatt ttgcgactcc ctttcaatga      2280
     caagcaggag ctgcttggcg acagcagaga ccaggccctc cgaagatttc attcgttgga      2340
     aaaacgcttc cagcgtcagc ctcaatacaa ggatgcgtac atccagttca tgcgggagta      2400
     tgaacaactg ggacatatgt cgaaaatccc agcagcagca cttaatttaa aagaaaattt      2460
     ttacctgcca catcatttcg tcctgaagga agacagcacc accacaaagc agcgcacagt      2520
     ctttgacggg tcagccaagt catcctcagg aatctccctc aacgacacac tcatggttgg      2580
     agcaacagtt cagccagacc tctactccct ccttcttggt tttcgctaca acaaggtagc      2640
     cctcaaggcg gacatcgcga aaatgtaccg tcaatttgag gtattcgaag atgaccaaga      2700
     ttaccagcgg atattgtgga gagaggacag cagtcagcca attacggagt accgccttac      2760
     taccgtaacg tacggcacat catgtgcacc tttcctagcc accagggctc tcaaccagct      2820
     tgccgaggat gaacgcagca gttatcctga cgccgcccat gctcttttga cctcaacgta      2880
     cgtagacgat tttcttggta catcagcgtc gccagcaaca gcagtgcagt tggtgaatca      2940
     attgattcaa ctcacagcaa gtgggggaat ggagatcaga aagtggtgct ccaacagtcc      3000
     ggaggtaatg gcagctatcc ctacacattt acgcgaggag tgtaacattg catcatttga      3060
     cgaccccacc gatcacagca gcgtcaaggc acttgggatc cggtggcagc cagcttcaga      3120
     cgaattccag tttaccgtca acgtcaacct tacctcgcgc ataacaaaac gacatttgct      3180
     atccgagata gccaagacct ttgaccccgt gggatggctt tctcctgtca ccatcaacgc      3240
     caaactacta ctccagaaag tttggctgga aggatcggac tgggactcaa tcgtttcttc      3300
     acatcttcaa gaagagtgga gtagctacat aaaaaattta ctacagttgg aggaggtgcg      3360
     tatcccaaga tgcatcatca cctcatcccc atcgtcagtg gaaattcacg gattttgtga      3420
     cagcagcgag gcctgttttg cttccgctgt ctacctcaaa tgccgttaca atgacggcag      3480
     ctcatcagtt cacctcatca cctcccgcac caaggtcgcc cccttgaagg ctgtctcact      3540
     tcctagattg gaactttgtg gtgctcatct tctagcagaa acaattaagg ctgttcagac      3600
     aacatttcct catcctcact cactttattg ttggactgac tccatgataa gtctcagatg      3660
     gatgtcttcc gtatctcgcc gctggaaaac atttgtggct aatcgcgtag ccgcaatcca      3720
     gggtcttgta ccgccagagc actggcacca cgtgaaagga gaggacaacc cagcagacat      3780
     gccttcccgt ggaatttcaa cgcaggacct ccttcagtca actttatggt ggcatgggcc      3840
     atcatggctc caacagggga cttatcccgt ctcccatcaa caatgtgacg acaacgaagt      3900
     ggtgaaggag gagcgtgcca agaaactcgc atgtttccac cttgccaaca attcagttca      3960
     ttcaacctta tttgcagcct tctcatcttt ccgaaaactt tgtcgtgtta ctgcctactt      4020
     cattcgtttt gtgaattttt taaaaaacaa aaaattatca gtcgtccgtg gagctttcac      4080
     cgtagccgaa atcaataatg ccaagcagaa gctcatcaag tgggcacaga cagtatcctt      4140
     gccagaggaa tttgaccaac tggaaaagac tcaacaagtc tccagttcca gcaagttgaa      4200
     gcagctatct cctttcattg acgtcaatgg actcatcaga gttggaggaa ggatacagaa      4260
     ggccaacttg ccagacacaa cacgtcatcc catcattctt cctcatgacc acctaatcac      4320
     tcaactcatc attactgact gccatcttaa ccacctccac agtgggttta ctctcacctt      4380
     cgcagccctc agaagacaat tttggattct acggggaagg gatacaatcc ggcatttcat      4440
     tcggaaatgc atcacatgtc gtcgtagcag agcagccaca acacagcagc tgatgggaaa      4500
     tcttccggtt ggtcgcgtca ccgtcagtcg tccatttctt catgctggtg tcgactttgc      4560
     tggtccgttt ccagtcaagt tcaagaaggg acgacatttc gagatcaaca agacctattt      4620
     cgccattttt gtgtgtcttg ccaccaaagc cgttcattta gaagccgtca ccagcctcag      4680
     cagcgaagca ttcatcgcct gctttgagcg ttttgtgtca cgtagaggca tcagctcaca      4740
     cctctacagc gactgtggca ctaattttgt tggagcggat cgtgttttgc agcagtacct      4800
     tcaacaggac cagccaaaac tccagcagca atatgccaat cgtgggacga cttggcattt      4860
     caatccgccc tcagcaccac atcaaggagg actttgggaa gcaggggtga aaagtgtgaa      4920
     attccacttt caccgcgtcg tgggacaaca agttctacaa ttggagcaat ttcagacgct      4980
     tctctgcaaa atagaagcgt gtctgaatag tcgacctctg tgtgccctct cagctgaccc      5040
     ttcagatgca gacgccctca ctcctggtca cttcatcatc ggagagccgc tgaccaacat      5100
     ccctgagcca gatgtcagtg gcttgaagtc aaacagactt tcagactggg agctcgttcg      5160
     tcaactcact caacattttt ggcagcgctg gtcaaccgaa tatttgacca cacttcagca      5220
     gcgtttcaag tggaccatga agcgaccaaa cctacaggtt ggagatttgg ttgtcatcgc      5280
     ggatgaccag atgccagttg caaaatggaa acttggacgt gttgtcgcag ttcaccccgg      5340
     acaagacaag ttggtgagat cagcaacagt ccagtcagca tcaggaacct ttaaacgtcc      5400
     agtcacaaaa ttatgtccat taattacaag taatgacaat tgatattaat gtttaatgaa      5460
     catgtccctt ttttctttgt cagataagcc gtgtgtagtg cgacttaatt gtcaatggat      5520
     ttgggacttt ctcttttcca ggcaccactg actgctaact tcgttgttgg tttgagctga      5580
     gcacaagaat aaaaatatgc tcgcccttac cttcatcgtt ccgttggtgt cactgggtca      5640
     atctgccggc ttaacattat ttaaaaaccc attattgtaa taagttgtct gactctgtac      5700
     gtatttctwt aaatgttcat tagtttcaat tgccacacgt gcgcaatggc cgggtg          5756
//
ID   BEL-30_SiCu-LTR repbase;    DNA;    INV; 738 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-30_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-738
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5027-5027 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 738 BP; 208 A; 140 C; 115 G; 273 T; 2 other;
     tgtttataac atagctaaaa tcgtactcat tgtcattgtg ttkttgcgta gttttgtata        60
     taagacagca atgtccaaaa tctcaatatt atgtatatga attattagta ttcatgaata       120
     tttttatggt gtgatgcgat ttgttgtgtg aatgaacttg tcatgtgata gattcgtgcc       180
     tctcgagagg cttctggaac atttttataa ggtaaatgac ctactcgcac caacatgcac       240
     ccacatgcac catagcaagt ttgtgtgtaa aatgtatacc tactaagcca agtctgtgta       300
     ttttaagtta cttcttacga aggcataaaa gcaacctgca gcctcgcctc tttgcccatt       360
     tcttcgatcg tcttttacgc tgcaacaagc agctcttaca ctttttttgt tgaccatgct       420
     gcaaggcagc cattttgtaa aagttgtgat cttgctattt ctgacgctct taaaactact       480
     aaaaacgcta aagtggtttt aggaaataaa gtttaatttc cagttttcaa atagtattca       540
     tcgtgtgcta actacattca ttttacttcg tgtttctgag attttttgtt catckttttt       600
     acgcattttt tatcatcatt ctttccacta caaaagcgac ctaattttta tcatctcgac       660
     ataaacagtc cattttttaa catttgacaa agagtagtta cctaaagtaa cttggtcctt       720
     ctatcatcat catagaca                                                     738
//
ID   BEL-31_AA-I repbase;    DNA;    INV; 6161 BP.
XX
AC   supercont1.241;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_AA_;
KW   BEL-31_AA-LTR; BEL-31_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6161
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.241; Positions 1408702 1402542.
XX
CC   Positions [5212-5772] - Integrase core
CC   'AACAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..2063
FT                 /product="BEL-31_AA-I_2p"
FT                 /translation="MSNPDHSANTSNPATPANEQTTSCECCDRPETIDDCV
FT                 QCDQCNGWWHMTCAEVTASVADRSWTCSHCLPLSVSSRTTTSSVKAARLAL
FT                 KKQQLEEQQAMEQRHLAEKYKLLQEELNEMDETGSNRSRISRRTSLDKVKQ
FT                 WQQKCVEQSEGAQGLPPVNQSVNLAAVPQASLNDSRDGSSMQQVPSKSNVS
FT                 AVPPADPNQTQQSDVHACKLVSVGLTQGYSEHKPPLSSTVKACSLPKFNHA
FT                 KRDQQQYTGAISKAIPNQQHLANAVGKSHSQEHPVAQQGKPLRDPFIIPPQ
FT                 SSKYDNSLQQIVKQFGSLATSATASSFHTNMLPFGTNTLSLPETSVGIAPP
FT                 VNPNQSSISAFPAVGLSNVGPSPHANPTLYSGPVPSVPGLQNVGSLPQPNP
FT                 VTSFGIVPPPSGLPIIDQFTPSPSQLAARQVMSRDLPPFSGDPADWPIFIS
FT                 SFMNSSLACGYNSAENLARLQRCLKGPAYESVKSRLLLPDSVPQVIDTLRL
FT                 LYGRPELLINALLQKVRSVSAPKAEKLETIIDFGMAVRSLCDHLEAAGQRE
FT                 HLSNPTLLMELVEKLPAHTKMQWADYMQQHPVVNLKVFGDFMLGVITAVSR
FT                 VTMYVSGSSGSQQKLKQKAAINAHTSETDPVREPVREKERVCVCCKKSGHR
FT                 IAECSIFKSYPVDNRWKFAQKWTVSELLKRAW"
FT   CDS           2959..6159
FT                 /product="BEL-31_AA-I_1p"
FT                 /translation="MAVKRLECLERKMVRDPELAANLKNQISEYQLKGYAH
FT                 RATREELAQADPKRVWYLPLGVVTNPRKPGKVRLIWDAAAKVDGISLNSML
FT                 LKGPDQLTSLPAVLSRFRQFKVGVSADIREMFHQLRIRESDRHSQRFLFRS
FT                 DPMKPIETYLMDVATFGSTCSPASAQYVKNKNAEEFSELFPRAVEGILENH
FT                 YVDDYLDSFGNEEEAERVSSEIRSIHQSGGFQLRNWLSNSAVVLRGLNEVD
FT                 PRASKNLCWNTNDSSDRVLGMLWQTADDELRFSMKLKEEVQQVIDSRKRPT
FT                 KRQMLRCLMGIYDPLGLLGVFIVHGKILLQDVWRTGLQWDEAVPDEIFERW
FT                 IRWTSLFPKIGDLRIPRCYFKAATDKMYERLQLHVFVDASEAAFSAVAYFR
FT                 VTNKESYSECTLIAAKTKVAPLKPLSIPRLELQAAVLGSRLMSFVQESHSI
FT                 EVKQRYLWSDSATVLAWLRADHRRYKQYVACRIGELLSTTEVAEWRWVPSK
FT                 LNPADAATKWVKNACPGVTDVWFKGPNFLKESEENWPKQVRLANHPEEELR
FT                 PCFVIQESIIPECVVDFTRFSKWRRLLGTVAYVHRFIDNCKRRQKKENLQR
FT                 LHLTQDELKKAKNTLMRIVQWQEYPDEMTLFSKGLRELPKTSTLYQLTPTM
FT                 DEYGVLRVDGRIGAAPHVAFDAKFPVILPRKHLVTKLLVDDFHRAFRHGNS
FT                 ETVVNEIRQYYHIFQLRTVVKQTAAACQWCKVMKAAPKVPRMASLPVTRLS
FT                 AFVRPFTYTGIDFFGPLLVKVGRSSAKRWICLFTCLTTRAVHVEVAYSLST
FT                 PSCVKCVRRFVCRRGAPAEIYTDNGTNFLGAERLLREQLKTLHSDLAATFT
FT                 NADTKWSFIPPGAPHMGGAWERMVRSIKSAMETAYNSDRKLDDEGLETLVV
FT                 EAEGIVNSRPLTYLPLDAEEGESLTPNHFLLGSSRGVRQPAMPLNDPATAV
FT                 KNSWNLIQHQLDIFWKRWIREYLPMLTKRMKWFGEVRPVAVGDLVLIVDES
FT                 RRNGWTRGRVQEVMTAGDGRVRQAIIQTARGMLRRPVSKLAVLEVESGGKT
FT                 GTDGQCYGGE"
XX
SQ   Sequence 6161 BP; 1697 A; 1438 C; 1612 G; 1414 T; 0 other;
     aatctttaaa aattatcgct atgtcgaacc cggatcactc agccaacacc tcaaacccag        60
     caacaccggc caatgaacaa accactagct gcgagtgttg tgatcgtccg gagacgatcg       120
     atgattgcgt tcaatgcgat caatgtaatg gatggtggca tatgacgtgt gcagaagtga       180
     cagcatcggt agcagatcga tcgtggacct gcagtcactg tttacctttg agtgtttctt       240
     cgcgaacaac aacatctagc gttaaagcgg cacgtttggc tttgaaaaag cagcagctag       300
     aagaacaaca agcgatggag caacgtcatc tggccgaaaa atacaagctt ctccaggagg       360
     agctgaacga gatggatgag accggtagca acagaagcag gatcagtcgg cgaacgagtt       420
     tggacaaggt gaaacagtgg cagcagaaat gtgttgagca gtctgaaggc gcgcagggtc       480
     taccgccggt gaaccaatcg gtgaaccttg cagcagttcc tcaggcatca ctaaacgact       540
     cgagagacgg cagttcgatg caacaggttc catcaaaatc caacgtttca gcggtacctc       600
     cagcggatcc gaaccaaaca cagcagtcag atgttcacgc atgcaagcta gtttcggtag       660
     gcttgactca gggatacagt gagcacaagc ctccgttgag ttcgacggtg aaagcatgta       720
     gtcttccgaa gttcaaccac gcaaagagag atcagcagca gtacaccggc gcaatctcta       780
     aggctattcc gaaccaacaa catttagcca acgctgtagg taaatcccat tcccaagaac       840
     accccgtagc acaacaaggt aagccacttc gtgatccttt tatcattcca ccccaatcat       900
     caaaatatga taactccctc caacaaattg taaaacaatt cggaagtctg gcaacatcag       960
     ccacggcttc ctctttccat acaaatatgc ttccatttgg aacgaatact ctttcactac      1020
     cagaaacgag tgttggcatt gcgccaccgg taaatccgaa tcagagttcc atatcagcct      1080
     tcccagcagt gggactatcg aatgttggcc cttcgccaca tgcaaatcca accttgtatt      1140
     ctggaccagt cccttcagtt ccgggactac agaatgttgg ctctttgcct caaccaaatc      1200
     cggttacatc tttcggaata gttcccccac cgtcgggact accgattatt gatcagttta      1260
     ctccctcccc ctcgcagtta gccgcgcgtc aagttatgtc acgcgattta ccgccgtttt      1320
     ctggcgatcc tgctgattgg cctatattca tcagcagctt tatgaatagt tcgctagcat      1380
     gtggctacaa cagtgctgaa aatttagcgc gacttcaacg ctgtttgaaa ggccccgcgt      1440
     atgaatcagt caaaagccgg ttattacttc ccgattcagt gccccaagtg attgatactc      1500
     ttcgtttgct gtacggtaga cctgaattgt taatcaacgc cttactacaa aaagtgcgca      1560
     gtgtttcagc accgaaagca gagaagttgg agaccatcat cgacttcggc atggcagtac      1620
     gtagcttgtg cgatcatctg gaggctgctg gtcagcgtga acatctttcc aacccaacgt      1680
     tgttgatgga gctagtggag aaactgcctg cacataccaa aatgcagtgg gcggattata      1740
     tgcagcagca cccggtggtc aatctcaagg tgttcggtga tttcatgctt ggagttatca      1800
     cggcggtcag cagagtaacc atgtacgtga gtggaagtag tggcagccag cagaaattga      1860
     agcagaaagc ggcaattaac gcccacacca gtgaaacaga tcccgtccgt gagccagtac      1920
     gagaaaagga gcgagtttgt gtttgctgca agaagtcagg tcaccgaata gccgaatgtt      1980
     ccatcttcaa gtcatatcct gtcgacaacc gttggaagtt tgcgcagaaa tggactgtgt      2040
     cggagttgct taaacgcgca tggtagaaga agttgcagga atgcaacgca gtgcgtcttc      2100
     gagggttgcc aataccggca tcatccgttg ttgcattcga atagatccgc ttctggtgca      2160
     cgatcgtcgc aacaattgtc aaccgtgcag aatcacattc accgacagta caagccggtg      2220
     cttctgttcc gcattgtacc ggtcattatc tccgggcctc aagcaactgt cgaaacattc      2280
     gccttcttgg acgacggttc agacctttcg ctcatcgaga acagtttggt ggagcaattg      2340
     ggagttgatg gatggaggaa gccgttatgt ctaaaatgga cagggaacgt caccagagtg      2400
     gagtcggatt caaagcacgt acggatactg atcaagggag cgagcagcca gcaagaattc      2460
     tctctgaacg acgtccgtac cgtggaagaa ctcactttac cagaacaaag tctagactac      2520
     ggtgaactgt cgcaacgcta ccgttatctc aaaggtttgc cggtagtcag ttacaccaaa      2580
     gcagtacctc gtctgttgat aggcgtcaac aacgcaagtc tcactgtccc actccaagtg      2640
     agagaaggca agaaagatga acctattgca gtaaagacta gacttggatg gtgcatattt      2700
     ggcggtcgtg gtaaggaggc atcacattcg ctgaactacc acgcctgcga atgctcaagt      2760
     gaccaggagc tgcataacgt agtaaaagaa tacttcgcaa tagaagatgc aggagtgaag      2820
     ccaccagttg tgctggaatc ggaagaggat aagcgggcga ggagaatcct ggaacagacg      2880
     actgttcgca ttggcgagcg ttttgaaacg ggtctactgt ggaagtacga cgtcattgaa      2940
     ttcccggaca gttacatcat ggcggtaaaa aggctggagt gcttagaacg caagatggta      3000
     cgagatccag agttggcggc taatctgaag aaccaaatat cagagtatca gctgaaagga      3060
     tatgcacatc gagcgacacg ggaagagtta gcgcaagcag atccgaagcg cgtgtggtat      3120
     ctgccgttgg gcgtagtaac gaatccacgg aaaccgggca aagtgcggct catatgggac      3180
     gcggctgcta aagtggatgg aatatccttg aactccatgc tgctcaaggg tccggaccag      3240
     ctaacttcgc ttcctgcagt tctatcacgt tttcgacagt tcaaggtggg cgtatctgca      3300
     gacattagag aaatgttcca ccagctacgg atccgtgagt ccgatcgcca ttctcagcgt      3360
     ttcctattcc gtagcgatcc gatgaaaccg atagaaacct atctaatgga tgtggcaacc      3420
     tttggatcca cgtgttcacc tgcatcggct caatatgtga aaaacaaaaa cgccgaagaa      3480
     ttttccgagc tttttccgcg agctgtcgaa ggaatcctgg aaaaccacta cgtggatgat      3540
     tacctcgata gttttgggaa tgaagaggag gctgaacggg tgtcaagcga aatccgatca      3600
     attcaccaaa gcggagggtt tcaactcagg aactggctgt cgaatagtgc cgtagtcctg      3660
     cgtgggctca atgaggtgga ccctagggcc agtaaaaacc tatgttggaa cacaaacgat      3720
     agtagtgatc gggttctggg catgctatgg cagactgctg atgacgagct ccgattttca      3780
     atgaagctga aagaagaggt tcaacaagtt atagacagca gaaaacggcc cacaaagcga      3840
     caaatgttga gatgcttaat ggggatttat gatcccctgg gtcttctagg cgtgttcata      3900
     gtccacggta aaatacttct tcaggatgtg tggcgaacgg gtttacagtg ggacgaggcg      3960
     gtgccagacg aaattttcga gcgttggata aggtggacca gcctgtttcc caagatcgga      4020
     gacctgcgga tacctcgatg ctattttaaa gcagcaactg ataaaatgta cgagcgacta      4080
     caattgcatg tcttcgttga tgcaagtgag gccgcatttt ccgctgtggc gtacttcagg      4140
     gtaaccaata aggaaagtta ctcggaatgc actttaattg ccgcaaaaac aaaagttgca      4200
     ccacttaagc cactttcaat tcctcgttta gaattgcaag ccgcagttct aggcagccgt      4260
     ttaatgtcct tcgttcagga gagccacagt atcgaagtga agcagcgata cctgtggagc      4320
     gattcagcaa cagtattagc ctggttgcga gcggatcatc gccgctacaa acagtatgta      4380
     gcttgccgga taggagagct actgtccacg acggaggtag cagaatggcg atgggtgcct      4440
     agcaagctca atccagcaga cgcagcgaca aagtgggtta aaaatgcgtg tcctggtgta      4500
     acagatgtat ggttcaaagg accgaatttc cttaaagaat ccgaggagaa ctggccaaag      4560
     caagtacgac ttgcaaatca tccagaagag gaattacgac catgttttgt aatccaagaa      4620
     tcaattattc cggagtgtgt ggtggatttt acgcgcttct caaagtggcg acgactgcta      4680
     ggtacagtag cgtatgtgca tcgtttcatc gataactgta agcgtagaca gaaaaaggaa      4740
     aatttgcagc gtctacatct aactcaggat gagctgaaga aagcgaaaaa tactttgatg      4800
     cgaatcgtgc agtggcagga gtacccagat gagatgactc tattttcgaa aggattacgt      4860
     gagctgccca aaacaagtac cttgtaccag ctgacgccaa caatggacga gtatggagta      4920
     ctgcgcgtcg atggaagaat cggggcggca ccgcacgttg cgttcgatgc taagtttccg      4980
     gtgatcctcc ctaggaaaca tctggtaacg aaacttctgg tggacgattt ccatagagcc      5040
     ttccgtcacg ggaactccga gacagttgtg aacgagattc gccagtatta tcacatcttc      5100
     caattaagaa cggtagtgaa acaaaccgcc gccgcatgcc aatggtgcaa ggtgatgaaa      5160
     gcggctccta aagttccaag aatggcatcg ctaccggtaa cacgtttgtc ggcgtttgtt      5220
     cgaccattta cgtacaccgg aattgatttc ttcggcccgc tgctggtaaa agtgggaaga      5280
     agttctgcca aacgttggat ctgtctattt acatgtctga ctacccgggc cgttcatgtg      5340
     gaggttgcct atagcttatc cacgccttcc tgcgtcaagt gcgtccgccg ttttgtctgc      5400
     cgccgaggag caccggcaga gatctatacc gataacggta caaatttcct aggtgccgag      5460
     cgtctattgc gagaacaact taagacgcta cacagtgatt tggcagcgac tttcaccaat      5520
     gcagatacca agtggagctt cattccacca ggagcgcctc acatgggtgg tgcttgggaa      5580
     agaatggtgc ggtcaattaa gtcggccatg gaaacggcct acaatagcga taggaaactc      5640
     gacgatgaag gactggagac attggtggtc gaagccgaag gaatagttaa tagcagaccg      5700
     ctcacctacc tgcctttgga cgccgaagaa ggagaatctc tcacaccaaa tcactttctt      5760
     ctcggaagct ccagaggtgt ccgccagcct gcaatgccgc tcaacgaccc tgctacagcg      5820
     gtgaagaact cctggaactt aattcaacac cagttggaca ttttctggaa gcgatggatt      5880
     cgggagtatc tcccgatgtt aacgaagcgt atgaagtggt tcggagaagt taggcctgta      5940
     gccgttggag acctggtact tattgtggac gaatcccgga ggaacggatg gactcgtgga      6000
     cgagttcagg aagttatgac ggccggagac ggaagagttc gacaagctat cattcagact      6060
     gcgaggggga tgttacgtag accggtatcg aagctggccg tgttggaggt agagtcaggt      6120
     ggtaaaactg ggaccgatgg ccagtgttac gggggggagg a                          6161
//
ID   BEL-31_AA-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   supercont1.241;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_AA_;
KW   BEL-31_AA-I; BEL-31_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-425
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.241; Positions 1402541 1402117.
XX
SQ   Sequence 425 BP; 147 A; 87 C; 79 G; 112 T; 0 other;
     tgttgctgcc agcactgccc cgcagtgtaa ccataactga accgctgaac agtgataaca        60
     gggagaattc aacggctagg agaaagatat cattgtcaat ccgtagacaa agcaggttgc       120
     gaatccatgc gagagctttc acaatcatat ctatcgagct taaatctaac taccttatcc       180
     taagtgtatc acagtgttat cacagtcggt tattaatcac aatagtaccg tgaacacaag       240
     ggaaacacat ctaaaatcac ataaattagg ctccaagacc gataattgtg agtatggaaa       300
     cttattataa aactaaaact aatgagaaaa taaattttca gtttaaagct gtcgtcacac       360
     cctaaatctt ggagttttgt gagctgctat taagaatcgg caagagccca tttgttctct       420
     gaaca                                                                   425
//
ID   BEL-31_AnFu-I repbase;    DNA;    INV; 3651 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-31_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3651
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 680-680 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..3432
FT                 /product="BEL-31_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 (partial)."
FT                 /translation="MNTESDQPQPTAGNPEPQFTTPNLPMSSTCRAPPSLD
FT                 ATGIISGSSAVNEVHRPSPATATADGPTQNELQYLLPLQGSPAPAELSLGF
FT                 DRSVATTSQRSACPKDLFPASSLRNPPSLRDGEGACHEGTPSTNRVDREIG
FT                 LMEIELRMKELELEQQRLALERTRLSLQSQGGGNMLIGERMSGAVKVGSEK
FT                 LNEWTAATERLGRFSSGAHVGFTPTTTTTPPLYPRQPGPLHSTSRFGINAS
FT                 YGHGSSHRYNNTVEQTIPTLNQSQLYARQGNLRDLPTFSGRPEEWATFVSN
FT                 FERTTTMYGYTDEENIERLSKALRGKARELVGLRLTTNDLPQVMNVLRRHF
FT                 GRPEIIVNCLIRKIRQLPSPKLERIDSLVDFGNAVQEMAAVISAHGMYGYA
FT                 YNVTLLQEFVXKLPAVLRREWSHHCLRLGIPTIQDFSDWMERELEASCYNT
FT                 MPSFESKDEKNVSEEKKRKTKPTSYLNTMVSGKAPNDAPENCVACKGACLS
FT                 LAECQRFAEMDVDQRWTMVKQERLCRKCLRRHMNICNIQKLCGKNGCVLQH
FT                 HNMLHRDRLSKYAASTTSKATEATKDAHTAAVATINTHTAANDGVLFQYIP
FT                 VVIYGNGKMVETVAFFDSGSSGTFIEEGLIGELGLNGKPHPLCIRWTGDTE
FT                 RDERDSVQLELKIAGVGNRTKVFTLPKVHTIRQLSLPHQSLSARQITGTHS
FT                 HLRNLPLTSYTNASPRLLIGIDNCHLVRPLRYAEGRKHEPAAVKTQLGWVV
FT                 FGPCASFPSLPQIHRNYHICMCSAEDRQVIETAMKDFFSIESLGVAKTVVN
FT                 MLSKDDERALQTLTSETKLSEGRYETCLLWRYDDIRLPCSRAMALRRYGCL
FT                 RRKMRTDPGLAKSVLEKMKSYEDQGYVRRLTPTELTARGERDWYLPVFPVF
FT                 NPNKPGKVRLVFDAAAKARGVSLNTFLLAGPDLLAGLLSMHYKFREHRTAV
FT                 VVDTKEMLFQVRMKPEDQRSQLFFWDREEVIDRDPTVYAVAVMCTGTTTEK
FT                 VLAMWWDTSTGEFTFRLSTKHDAQLLSGERLPNKRKILLQEVWRPATKLAV
FT                 LDVKAHGTAIEDERTSKHRPLQLAGCKQMLHQLGVLHRAGECQTF"
XX
SQ   Sequence 3651 BP; 1030 A; 875 C; 954 G; 788 T; 4 other;
     gtgtgattat ttacgtacgt gacactgatc ggtcgtaata ttcgcggacg catttcgtta        60
     agtgatcgcg agttaaaagt gaacacggta cgcgcgcgga aataaactgt ttcactgaat       120
     cacgttatga acacggaaag tgatcaacca caaccgacgg ctggaaaccc cgagccacaa       180
     ttcactacgc cgaacctacc gatgagttcg acttgcaggg cgccaccatc gcttgacgcg       240
     actggtatca tctcgggttc atctgcggtc aacgaagttc atcgcccgtc gccggctaca       300
     gcaacagctg acgggcctac gcagaacgag ctgcaatact tactcccttt gcagggctcg       360
     cctgcaccag cggaactttc gttaggattc gataggagcg tagccaccac ctcgcagcgt       420
     tcggcgtgtc cgaaggatct tttcccggcg tcatcgctgc gcaacccacc atcattgcgc       480
     gatggcgaag gagcgtgcca tgaagggacg ccatcgacga atcgtgttga tcgtgagatt       540
     gggttgatgg aaatagagtt gaggatgaag gagcttgagc tcgaacagca aaggctcgcg       600
     ttagaaagga cgcgcctcag cctgcaaagc caaggtggcg gtaatatgtt gatcggggaa       660
     cgaatgtcag gtgctgtgaa agtaggatct gaaaagttga acgagtggac ggctgcgacg       720
     gagcgtttag gtagattttc aagcggagcc cacgtcgggt ttactccaac taccactact       780
     acgccccccc tttaccctcg acaaccaggc ccattgcata gcacaagcag attcggaatt       840
     aacgcgtcgt atggacacgg ttccagccac cggtacaaca atacagtcga gcagactatc       900
     ccgactctga accagagtca actctacgct cgtcaaggaa atctaagaga tttgcctacg       960
     ttctccggac ggccggagga atgggcaacg tttgtgtcca attttgaaag aacgacgaca      1020
     atgtacggct acaccgacga ggaaaacatc gaacgcctgt caaaggcttt gcgtggtaag      1080
     gctcgagagc tggttggact gagactaacg accaacgatc ttcctcaggt tatgaacgtg      1140
     ttacgtcgcc attttggacg ccctgaaatc attgtaaatt gtctgatccg aaagattcgt      1200
     cagcttcctt cgccaaagct tgagcgaatc gattctttgg tagactttgg caacgctgtg      1260
     caggagatgg ctgcagtaat ttcagctcac ggtatgtacg gatacgcgta taacgtcacg      1320
     ttgctccagg aattcgtaga maaacttccc gcagtgctac gacgtgagtg gtcgcatcat      1380
     tgtctacgat taggcatacc gactatccaa gatttcagtg actggatgga aagggagctt      1440
     gaggcgtcct gctacaacac aatgcccagt tttgaatcta aagatgaaaa aaacgtatca      1500
     gaagaaaaga aacgaaagac gaagcctacc tcttacctga acacgatggt aagcgggaaa      1560
     gcaccaaacg atgctccgga aaattgcgtc gcttgtaagg gtgcatgctt aagcttagca      1620
     gagtgccaaa ggtttgctga aatggatgtc gaccaacggt ggaccatggt caagcaggaa      1680
     aggttgtgtc gaaagtgctt gcgacgtcac atgaatatat gcaacataca aaagctgtgt      1740
     ggcaaaaacg gctgcgtgct acagcatcac aatatgttgc atcgtgatag actatcgaag      1800
     tatgccgcat cgacgacatc taaagcgaca gaggcaacca aagacgcgca tacagcggcg      1860
     gttgcaacca taaacaccca tacagcagcg aatgatggag tgcttttcca atatattcca      1920
     gtagtgattt acgggaacgg gaaaatggtc gagaccgtcg cgttctttga tagcggatcg      1980
     tcaggtacgt ttattgaaga agggttgatt ggtgagctag ggctgaatgg gaagccccat      2040
     cctctgtgca ttcgctggac tggcgatacg gaacgagatg aaagagattc agttcagcta      2100
     gaactgaaaa tcgcgggggt tggaaatcgg accaaagtat tcactctacc aaaggttcac      2160
     accattcgtc aactgtcgct gccgcaccag tcactatcag cgagacaaat aaccggcacc      2220
     cacagccacc tgaggaactt accattaacg tcctacacca acgcaagccc acgtctgcta      2280
     atcggcatag acaactgcca tttggtaaga ccgcttcgat acgctgaggg caggaagcat      2340
     gaacccgcag cagtgaaaac gcaattggga tgggtcgttt tcggcccatg tgcaagcttt      2400
     ccgtctcttc cgcagattca tcggaactac cacatatgca tgtgtagcgc ggaagaccga      2460
     caagtcatcg agacggcaat gaaagatttc ttttctatcg aatctttagg ggttgcgaag      2520
     acagtcgtca acatgctctc aaaggacgac gaaagagcct tgcaaacgct cacctctgaa      2580
     accaagctgt cggaaggtcg ctacgaaacg tgcctgctgt ggcgttacga cgatatccgt      2640
     cttccatgct ccagagcgat ggctcttagg cgatacggat gtctgcgaag aaagatgaga      2700
     acggacccag gtctcgccaa atccgttctc gagaaaatga agagctatga agatcaaggg      2760
     tatgttagac gacttacgcc aacggagctt accgcacggg gagaacgtga ttggtatctt      2820
     ccggtattcc ctgtattcaa cccgaacaaa cccgggaagg ttcgcctggt gttcgatgca      2880
     gcggcgaagg ctcgaggcgt gagtctcaac actttcctac tagcaggtcc ggatctgcta      2940
     gcaggactct tgtcgatgca ctacaaattt cgggagcatc gaacagccgt ggttgttgac      3000
     actaaggaaa tgttattcca agtgaggatg aaacccgagg accagcgctc acaactattc      3060
     ttctgggatc gggaagaagt catcgaccgt gatcccacgg tgtacgcagt agcagttatg      3120
     tgcacgggca ccacaaccga gaaggtgtta gcgatgtggt gggatacatc gacaggcgag      3180
     ttcaccttta ggctatctac gaagcacgac gcgcaattgc tttccggcga aagattgcct      3240
     aacaaaagga agattctttt gcaagaggtc tggagaccag ccaccaaatt agcggtttta      3300
     gatgtgaaag cacatggcac agcgatagag gatgagcgca caagtaaaca tcgaccactt      3360
     cagttggcag gttgtaaaca gatgctgcat caactaggag ttttgcaccg ggcgggagaa      3420
     tgtcaaacct tttgacacaa cctgccgtaa caacagtaat gttgattgac gaaagagggc      3480
     gccactaacg aacgttataa aagagggaca cgggagaaaa aagggctctc tcgttacaac      3540
     aacaccacgg aaaaaggaca ataaatttcg aacgcgcttt aactttaaca aaacgcagtt      3600
     agagatattt tccgtaaaaa tccgaaagtt gtaacagtca kgttakkcaa a               3651
//
ID   BEL-31_AnFu-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-216
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 734-734 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 216 BP; 83 A; 44 C; 44 G; 45 T; 0 other;
     tgtcaaacct tttgacacaa cctgccgtaa caagagtact gttgattgac gaaagagggc        60
     gccactaacg aacgttataa aagagggaca cgggagaaaa aagggctctc tcgttacaac       120
     aacaccacgg aaaaaggaca ataaatttcg aacgcgcttt aactttaaca aaacgcagtt       180
     agagatattt tccgtaaaaa tccgaaagtt gtaaca                                 216
//
ID   BEL-31_CQ-I repbase;    DNA;    INV; 5772 BP.
XX
AC   AAWU01011368;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_CQ_;
KW   BEL-31_CQ-LTR; BEL-31_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5772
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 215-215 (2011).
XX
DR   GenBank; AAWU01011368; Positions    2310    8081.
XX
CC   Positions [4829-5377] - Integrase core
CC   'GGCTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..5772
FT                 /product="BEL-31_CQ-I_1p"
FT                 /translation="MADENPDFTETPCSTCKEVSTEDELMVGCDSCKLWFH
FT                 ARCVNLNPADKKSGKKWYCPDKDCQKKKKTKKSVEVPLPLPPELQEKLKAL
FT                 EETRKRMEAEQEMERILKEKELEMAVYLQERQMKIDEELREREFKQREANL
FT                 EAEMQKKEEHLKRIQKLETTFRDKSASIDKLLQNSSTPLRNPEVKPLTTEN
FT                 LGKHDNGENSGGTPSKPASKKTSSRSSSGSSTTSSGSGKGEADTKGDGNDE
FT                 KSVKPGKAEDSGEKPDGLGQHGSGPTKAQRAARQGLTRKLPDFHGKPEEWP
FT                 LFFAAYQASNEACGYTDVENLVRLQDCLKGRALEEVRGQLILPKSVPRVIA
FT                 KLRQIYGRPEVLLQSHLQRVRKLEPPRADKLGSFIPFGNAVEQLCEHIEAA
FT                 ELTAHLVNPILIQELVDKLPDGEKRSWVHYKRKKREVNLRTLTNFLSKIVE
FT                 DACEATVNLDYKPDVRAASGPSGRSRNKEKAALFNHSVAEECTERREQKPQ
FT                 KLCRVCQRMDHRLWTCEDFKKLPYEDRAKMATKWKLCQRCLNEHGGQCKLK
FT                 LRCNVGECREPHNPLLHPETRAVGMNAHITSTSPVLFRMLPVKVYCGERSM
FT                 TVLAFLDEGSSLTLIESGLADRLGLLGTKEKLTIKWTANITRVEQHSRRTN
FT                 IWASAINGTNGEKLLLQSVRTVDKLMLPRQTLNAAEVSSHYDHLRGLPMDS
FT                 YDGRPGMLIGLNNIHSFAPLETKVGTIVDPVAVRCKLGWTVYGPRDAESAG
FT                 ASCFLGCHQEVTNEELHDLLKSHYSLEEAVVTVQRESVEDQRARKIMEETT
FT                 RRVGDRFETGLLWKTDDVKFPNSYPMAVKRMKQLEKKLERSPELYDNVKKQ
FT                 IEDYQAKGYAHEATAEELNGTNNNKAFYLPLNVVVNPKKPGKVRLVWDAAA
FT                 TVDGVSLNSMLMKGPDLLVPLVSVICGFRERRVAFGGDIREMYHQLKIISG
FT                 DKQAQRFLFRDNIKEKPKVYVMDVATFGSKSSPASAQYVKNRNAEEHAGQY
FT                 PDAVAAIINRHYVDDYFDSVDTVEEAVKRAKQVSHVHKKGGFEIRNWVSNS
FT                 PEVLTALGEEKPMSPVLLNQDKQTPSERVLGVRWDPELDEFAFAVMHREEL
FT                 MKYLKEGKRPTKRIVLSCVMGFFDPLGLLSPFTIHGKIIIQHLWRTGCRWD
FT                 QDIDDEAWILWKRWTALLPEVEALRFPRSYFGDAMSTSVESLELHIFSDAS
FT                 ELAYGCAAYLRAVIDGQVHCSLVMARSKVAPLKRQSIPRLELMAACMGARM
FT                 SQQILGTHTLQIDRTVFWTDSRTVLAWLHADPYKYKQFVAFRVGEILELTR
FT                 LDDWRWVPSKKNIADVLTKWGPGPPLQNDSEWRNGPAILFEQDDDSPPEQI
FT                 EETNEDARGLVLFHGTVNVEAVSTWTKLVRVTATAVRFIENCRRRKDGRPV
FT                 LTAKATSRLAKLVKAQHETEVQPLQQDELQKAERILWKQAQFESFPDEMSV
FT                 LTKNLQLKQGELPEKIERSSPLYKLLPVLDEDGVLRVRGRLEKNESIPFDK
FT                 RFPIILGRKHAVTKKIIQHYHEKYGHANRETVFNELRQKFWIPNARAAILE
FT                 VVKECVWCKVNRCVPFVPTMAPLPVERTAATMRPFSAVGVDYLGPVEVTVG
FT                 RRREKRWIAVFTCLAVRAVHLEVVHSLTTQSCLMALRRFACKRGVSEKVFS
FT                 DNATCFRGADAAITKEINKECAEQMTSPTTSWSFIPPGTPHMGGAWERMVR
FT                 SVKEALRALDDGRKLTDEILSTSLAEAEDMINTRPLTYVPQDSAEEEAITP
FT                 NHFLRGTVTSADLKVDETVDTAAALRDVYKRSQQLAGKMWERWSKEYLPSL
FT                 NRRPKWFEDRKPLEAGDLVFVVDGKNRKSWVRGRVEEVFKGSDGRVRQADV
FT                 RSADGKVNRRAVANLAVLEIMDCKSDVLECPTDVTGWG"
XX
SQ   Sequence 5772 BP; 1449 A; 1488 C; 1837 G; 998 T; 0 other;
     atcttcaaaa ttaattgtgg gttcggtaat cctctccacg atggccgacg aaaatccgga        60
     cttcaccgag actccctgct caacctgtaa agaggtgtcg accgaggatg agctgatggt       120
     tggctgcgat agctgcaaac tgtggttcca cgctcggtgc gtcaacctca atccggctga       180
     caagaagtcg gggaagaagt ggtactgtcc ggacaaggac tgccaaaaga agaagaagac       240
     taagaagtct gtggaagtac cgctcccatt gccgcccgag ttgcaagaaa agttgaaagc       300
     tttggaagaa actcggaagc gcatggaagc ggaacaagag atggagcgaa tcctgaagga       360
     gaaggagctc gaaatggctg tctaccttca ggagcgccag atgaagatcg acgaggaact       420
     ccgagagagg gagttcaagc agcgagaggc gaacctagag gcggagatgc agaagaagga       480
     ggaacacctg aagcggatcc agaagctgga gactacattt cgggacaaaa gcgcctccat       540
     cgacaagctg ttgcaaaaca gcagcactcc gctgcgaaac ccagaagtca aaccattgac       600
     aacggaaaac ctgggaaaac acgacaatgg cgaaaactct gggggcacac cgagcaaacc       660
     ggcttccaag aagacgtcca gccgctcttc gtcggggtcc agcactacca gttctggcag       720
     tggcaaaggc gaggccgata cgaaaggtga tggaaacgac gagaagtcgg tcaagccggg       780
     aaaagctgag gattctggag agaagccaga cgggctgggg cagcacggtt cgggtccaac       840
     gaaggcccag cgagctgcaa gacaagggct gacaaggaag ctgccagact tccacggcaa       900
     gccagaagag tggccattgt tctttgcggc ctaccaagcg tcgaacgaag cctgcgggta       960
     cacggacgtg gagaatctcg tgcgcctaca agactgcctg aaaggcagag cgctcgagga      1020
     ggtgcgtggc cagctcattc tgcccaagtc ggttccgcgt gtgatcgcca agcttcgcca      1080
     gatctacggt cgcccagaag ttctgctgca aagccacctg caacgagtgc gcaagctgga      1140
     gccgccgaga gcggacaagt tgggatcgtt catcccgttt ggcaatgcag tggaacaatt      1200
     gtgcgagcac atcgaggccg cagaactgac ggcgcacctg gtcaatccga tcttgatcca      1260
     ggaactcgtc gacaagcttc cggacgggga gaagaggagt tgggtgcact acaagcgcaa      1320
     gaagcgcgaa gtaaatctgc gcacgctcac caactttctc tcaaagatcg tcgaggatgc      1380
     gtgcgaggcg acggtgaacc tggactacaa gccggacgtc agagcggcgt cgggaccgag      1440
     cggccgaagc cgaaacaagg aaaaagccgc actgttcaac cacagcgtag ccgaggaatg      1500
     tacagaacgg cgagagcaga agccacaaaa gctgtgcagg gtgtgccagc gcatggatca      1560
     ccgactgtgg acatgcgagg acttcaagaa gctgccatat gaggatcgag cgaagatggc      1620
     gacgaagtgg aaattatgcc aacgctgcct gaatgaacac ggcggtcaat gcaagctcaa      1680
     acttcgctgc aacgtcggag agtgccgcga gccacacaat cctctgcttc acccggagac      1740
     gagggcagtt ggcatgaacg cacacattac gtccacgagt cccgtgctgt tccggatgct      1800
     cccggtaaaa gtctactgcg gtgagagatc aatgaccgtg ctcgctttcc ttgacgaggg      1860
     ttcgtccctc accctgatcg aaagtggtct tgccgaccgt ttggggctat tggggacgaa      1920
     ggagaagctc accatcaagt ggacggccaa catcacgcga gtggaacaac attcgaggcg      1980
     gacaaatatt tgggcgtcgg cgatcaacgg gacgaatggc gagaagctgc tgctgcaatc      2040
     tgtccgcacg gtggacaagc tgatgttgcc acgccaaaca cttaatgctg ctgaagtttc      2100
     gtcacactac gatcacttgc gcgggcttcc gatggattcg tacgacggtc ggccaggaat      2160
     gctgatcggg ttgaataaca ttcattcgtt cgcaccgctg gaaacgaagg tcggcacgat      2220
     tgtcgatccg gtggcagtcc ggtgcaagct cggctggacg gtctacggac cgcgggatgc      2280
     agagtcggcg ggcgcgagct gtttcctcgg atgccaccaa gaagtgacga acgaggagct      2340
     gcacgatctt ctcaaaagcc actattcgct ggaagaagcg gtggtgactg tgcagcggga      2400
     gtcggtcgag gatcagcggg cgaggaagat catggaggaa actacacgtc gcgtgggtga      2460
     ccgcttcgag accggactgc tgtggaagac cgacgacgtc aagttcccga acagctatcc      2520
     gatggctgta aagcggatga agcagctgga gaagaaactt gagcgttcgc cagagctgta      2580
     cgacaacgtc aagaagcaga ttgaagacta ccaggccaag ggatacgcgc acgaagccac      2640
     cgcggaggaa ctgaacggaa caaacaacaa caaagcgttc tacctgccgc tcaacgtggt      2700
     ggtgaacccg aagaagccgg ggaaagttcg gctggtctgg gatgcggccg cgacggtaga      2760
     tggagtctct ctcaattcga tgctgatgaa gggaccagat ctgctcgtgc cactggtgtc      2820
     ggtgatctgt gggttccgcg aacgacgggt tgctttcggc ggggacatcc gtgagatgta      2880
     ccaccagctg aagattatct ccggggacaa gcaagctcaa cgcttcctct tccgggacaa      2940
     catcaaagaa aagccgaaag tgtacgtgat ggacgtcgct acattcgggt cgaagagttc      3000
     accggcgtcg gcgcagtacg tgaagaatcg caatgcggaa gagcatgctg gtcagtatcc      3060
     ggacgctgtg gcagcgatca tcaatcggca ctacgtcgat gactactttg acagcgtcga      3120
     caccgttgag gaagctgtca agcgagcgaa gcaggtgagc cacgtccaca aaaaaggtgg      3180
     cttcgagatc cgcaactggg tgtccaactc gccggaagtg ctgactgctc tgggcgaaga      3240
     gaagccgatg agtcctgtgc tgctgaacca ggacaagcaa acacccagcg agcgcgtact      3300
     tggcgtgcgg tgggacccgg agctggacga attcgccttc gccgtgatgc accgcgaaga      3360
     actgatgaag tacctgaaag aggggaaaag accaactaaa cggatcgtac tgagctgcgt      3420
     gatgggattt ttcgatccgc tcggcctgct gtcaccattc acaatccacg ggaagatcat      3480
     catccaacac ttgtggcgga ccggctgcag atgggaccaa gacatcgacg acgaagcctg      3540
     gattctgtgg aagcggtgga cggcactgct gccggaagtc gaagcacttc ggtttccccg      3600
     gagctacttc ggcgatgcga tgtccacgtc ggtcgagagt ctcgagctgc acatcttcag      3660
     tgacgcgagc gagctggcgt acggttgtgc ggcgtatcta cgcgcggtca tcgacggtca      3720
     agttcactgc agtctcgtca tggcgcgatc gaaggtggca ccgctgaaac gacaatcgat      3780
     tccacgactg gagttgatgg cggcgtgcat gggagcgcgc atgagccagc agatcctcgg      3840
     aactcacacg ctgcagatcg accgaaccgt tttctggacc gactcgagga ccgtccttgc      3900
     gtggctgcac gcagatccct acaagtacaa gcagttcgtc gcctttcggg tcggggagat      3960
     tctggagctg acgagactgg acgattggag atgggtgcct tccaagaaga acatcgcgga      4020
     cgttctcaca aagtggggac ctggaccgcc actgcagaac gattcggaat ggcggaacgg      4080
     tccggcgata ctgttcgagc aggatgacga ctcaccacct gagcagatcg aggagacgaa      4140
     cgaagacgca cgaggcttgg tactgttcca cgggacagtc aacgtagaag cggtctcgac      4200
     gtggacaaag ctggtgaggg tgactgcaac ggcggtacgc ttcatcgaaa attgtcgtcg      4260
     cagaaaagac ggccgtccgg tactgactgc aaaggccacg agtcgcctag ccaagctggt      4320
     taaagcgcag cacgagacgg aggtccaacc gctgcaacaa gacgagctgc agaaggccga      4380
     gaggattctg tggaagcaag cgcagttcga gagcttcccc gacgagatga gcgtgctgac      4440
     gaagaaccta caactgaagc agggtgagtt gccagagaag atcgagcggt caagtccact      4500
     ctacaagctg ctgccggtgc tcgacgagga tggggttctg cgcgttcgtg ggaggctgga      4560
     gaagaacgaa tcgatcccgt tcgacaagcg attcccgatc atcctgggtc gaaaacacgc      4620
     cgtcaccaag aagatcatcc agcactacca cgagaagtac ggtcacgcga atcgggagac      4680
     cgtgttcaac gagctgcgcc agaagttctg gattccaaac gcacgggctg cgatcctgga      4740
     ggtcgtaaag gagtgtgtgt ggtgcaaggt gaaccgttgc gtgccgttcg tcccaacaat      4800
     ggcgccgctt ccggtcgaac gcactgcagc aaccatgcga ccgttcagcg cagtaggcgt      4860
     ggattacttg ggaccggtcg aagtcacggt ggggcgccgc agagaaaaac gctggatcgc      4920
     agtcttcacg tgcttagcgg tcagggcggt gcatctcgaa gtggtccata gcctcaccac      4980
     gcaatcgtgc ctgatggccc tccggaggtt cgcgtgcaaa cgcggcgttt cagagaaagt      5040
     gttctccgac aacgctacgt gctttcgggg agcagacgcg gcgataacga aggagatcaa      5100
     caaggagtgc gcggagcaga tgacgtcacc gaccacttca tggtccttta tcccacctgg      5160
     gacgccccac atgggcggcg cctgggaacg gatggtgcga tcggtgaagg aggcgttgcg      5220
     cgcacttgac gacggacgaa agctgaccga cgaaattctc tcgacatctt tggccgaggc      5280
     cgaagacatg atcaacactc ggccgctgac gtacgtccct caagattccg ctgaagaaga      5340
     agccatcacg ccaaaccact tcctgcgcgg gacggtaacg agtgcggacc tcaaagtgga      5400
     cgagacggtg gacaccgctg ctgcactgcg agatgtctac aagcggagtc agcagctggc      5460
     gggcaagatg tgggagcgat ggtcgaagga gtacctgccc tcgctgaacc ggcgtccaaa      5520
     gtggttcgag gatcggaagc ccctcgaggc gggtgacttg gtgttcgtgg tcgatggcaa      5580
     gaaccggaag agctgggtac gaggtcgagt ggaggaggtc ttcaaggggt cggacgggcg      5640
     agttcggcaa gcggacgtga ggagtgcgga cggcaaggtc aacaggagag ccgtggcgaa      5700
     cttagcggtg ttggagataa tggactgtaa atccgacgtg ctggaatgcc cgacggatgt      5760
     tacgggctgg gg                                                          5772
//
ID   BEL-31_CQ-LTR repbase;    DNA;    INV; 625 BP.
XX
AC   AAWU01011368;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_CQ_;
KW   BEL-31_CQ-I; BEL-31_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-625
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 216-216 (2011).
XX
DR   GenBank; AAWU01011368; Positions    1685    2309.
XX
SQ   Sequence 625 BP; 201 A; 123 C; 153 G; 148 T; 0 other;
     tgttgcgacc gccaagatgg gaacactgcc atgcggtgtg acggcgacgg tgcaatcttc        60
     cgacaccgtc ttggctgtca acacacgcga aaaggaggag caagcaaaaa caaagtgcgt       120
     gtgtgacacc cagcttcaag acacacgttg caagtcacca tttgcgaaga gtaagggaat       180
     ttagtgcggg atattttctt tcggttagtt gcgcgaaaaa aagtatattt cgttgtgaaa       240
     gtagtttgaa tttattgaaa actccaattt acacacctga tatatcaagc aatcgtccaa       300
     tcgttgctac cgcagctaga cgctaacttg atttctgctg ctaaaccttt acgcacctgg       360
     atctccacta gaatcgcacc gtcacttggt acagctttgt accggatcga tcaagcgaag       420
     agtgaaagga aggaacgaag gacaggaaga ggaagaggag tcgggaagga aaggagtcaa       480
     tcgggaaagg aagaccaatt aagtaggttt tggatagtta aaatgtaaac aaaattctaa       540
     ataaaaatac ttaattctag ttttgaagct gctcgaagag ctgctgaaca aaaagttggg       600
     gttttattta ccgaccaccc gaaca                                             625
//
ID   BEL-31_DTa-I repbase;    DNA;    INV; 5406 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5406
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~98% identity to each other.
XX
SQ   Sequence 5406 BP; 1457 A; 1372 C; 1445 G; 1132 T; 0 other;
     ttctgaaata tttttcccgg ctgaaacgtg gagccatcaa tcggaatcta acggcgtgac        60
     tgcaaccttc cggggcaagt tcaagtcagc ctgcgctaaa ggaaaaatat tggaaccagg       120
     cgcagcttca gcgctgagcg aggagcccta acctaaacgc ggttgcggct caacataacc       180
     tagaggctta cgtaacccga gtcacgtgag gaaccgacca gggggaaaca aggacacaga       240
     ggaggacaaa tctgaaggtg atttgaccac gcctccgggc ggactcccca ctgactcaac       300
     gttaacaagc atgccggaag gaccaggtgg agctgatcac tcaagtgcag atcagccagt       360
     cgggctgatg tctacgcccc aatcagtcgg cgcgggagtc ataaagaaaa caaacggcca       420
     gcgattgttt aatcaaaccg gcgagctcga catcaccgcc attgggaatc acctgaccca       480
     aagcaacaag tgcgggccaa gcatcagttt gccctttcag gccaacacgg cgcacttaaa       540
     caactcgacg aacacatggg gcttgagaaa gccggactcg gtgccagatc cgtttcataa       600
     ccaagcgccg ctactaacgc gtggccacgg aggcgcatat gaggaatcaa caccgcctag       660
     gcaaagcggc tccgatatcg gctatgcacg tagccgcaag acaagttctt aacagagaac       720
     ttcctgtatt caccggcaag ccagagaagt ggttgctttt tattagcaac tatgaacagt       780
     ctacagacag atgcggcttc agtaatgagg agaacctgat acgccttcaa aggtccctta       840
     agggagcggc acttgaggcc gcacgtggta agctaatgtg cccgtccaca gttccttacg       900
     cgatcgggac tttcaggatg ctatatgaac gtcctgaggt tatcttcgct agtctccagc       960
     gaaaactaag agaagaaccc gccgtgagat ccaacaacgt ggattcgata atccgagtag      1020
     cgctggccgt gcagaactac tgcgcgacaa tatcagcgat aggtctacac gagtacctac      1080
     atgatccagc tctgctatgg gaacttgttg aaaaactacc gacggacctg aagttcgact      1140
     ggggccgaca ccggctctca actggaggaa tcactgccaa tctgtcaatg ttcgacaact      1200
     ggctgttcaa tgtcgctatg tgcgccagca tggtcacgcc atatgcgcca aacatagggg      1260
     aacgcagaac cacaagagaa cggatacttg tacattcaga aattccacca ccagacgaac      1320
     cccaaaggca aacccgtgat cggaccaaca gaagtgcatc ttgtcgtaaa tgtggacgcg      1380
     gttacttact gtcgctatgt cccgatttcc tagacatgtc tcggaatcag cgttgggact      1440
     tcgtgcgcaa taaaaacctg tgttactgct gcctagaaga tcacacagtt tgaagctgca      1500
     ggtcaaaaag ggattgcgga gttgatggct gtagaaggac ccaccatgcc ctgttgcact      1560
     cctaccaagc aaccgaggaa gcaggaaacg ctacaacagg atcccgaagg cctccagccg      1620
     tgctgtttca tggaggagaa tcatcgaagg cgctgttccg ttaatcaagg tgcagctgta      1680
     tggtcgaaac tgctacataa atacctttgc gttggttgat gaaggcgccg cttgcaccct      1740
     gatagagaag gatctggccg acgagttggg actagacggc ccggaaaagg agctttatct      1800
     gcgctggact ggggaaattt cccaaacgga accggcctcc aagttggtga acctttaaat      1860
     ctcggctgca aaccagggtg caacacgcta tgatttaaag ggagtaagga ccgtcgctca      1920
     tttagacctg cctacccaaa gcctaggaga agaacttata aagtcgcgat ctgatcttca      1980
     atccatccca atgccaacct accgcaatgc gaaggcgaga ctcatcatcg gtctagataa      2040
     catcaaaacc agcgttccgc tcgaggtgcg agagctagaa ggagacgata tcgtggcagt      2100
     acgttgcaga cttggttggt ccgcttatgg acggcagtgt tctggtgaag cttcgcgccc      2160
     acgtatcttg cacgtttgcg agtgcaataa cggggaccgc ctgcacgttc tggatgaggc      2220
     tatgagaaac cactttgcgc tggaatctct gggcgtaacc gtcgccaata agccccttag      2280
     atcgaaggag gatgaacgcg ctgcttgtat aatggaggct aagacaacct tcgaccccga      2340
     agctaagcgt tggcaaaccg ggctactctg gagatacgat aaaatgatac tgcctaactc      2400
     gtatcctatg gcgctggggc gtctacgatg tctggaggct aagatggcaa aggacccggc      2460
     ccttagccaa ttcttgattg aaagtatgaa gagttacccg gagaagggta cactcggcag      2520
     ttagtttgag aggagatagt ctccaattca aactcctggt atctcccgat ctttactgtt      2580
     accaacccaa ataagaagaa aatccggatg gtatgggacg cagcggctga agtcaacgga      2640
     gtgtccctca accatgctct gctgaaagga ccggacatac tggtatcgct aatgggagtg      2700
     ctgatgcggt ttcgcgaagg aaaagtagca gtcgctgggg acattcgtga gatgttccac      2760
     caagtaaagg tgcgacctga agaccaaggg tcccaaatgt ttttgtggag aggaggagat      2820
     acgtcacgcg atcctgatat ttatgcggag cgcttctcca aacagtcgcc ggaagctgtc      2880
     gcggctatat gcaggaacac ctttgtcgac gactggctcg agtccgccga ttcggagagc      2940
     gacatgatat cactcgccgg cacagtaaag aaaatccatg aagaaggagc gcgagctaga      3000
     gaacggcgcc gccacctctg ccagatgtct cgcagcaatt aacgaaaatc aagaaaaggt      3060
     tctgggatta tggtggatgc caggttctga cctcctcacg tatgtggtca agccggaaat      3120
     gacagcgcta ggatcgacaa ataagtactc aaagaggaga gttctaagta taatcatgac      3180
     cattttttga cccacttgcc ctattaggat ttttcatcat ccgggccaaa atcatattgc      3240
     aaaacatttg gcgatccggt gtaggatggg acgatccgct tcaagacaac gatgcaaccg      3300
     agtggaggca ttggctggac ctattgccgc gactaaagga agtcaggata ccccgatgca      3360
     tcccacggaa aagcggctgc ctacaaagtc agctacacac cttcgtagac gctagtctta      3420
     atgcgtacgc tgctgtggtg tttttacgaa ccgaggctga tggcgaagtt caatgtcccc      3480
     tggtcgcctc caagacgcgc gtagcgcctc taaagcctgt atcagttcca aggcttgaac      3540
     tactagcagc ggtgctgggc ttgcggctgt caaagtccgt ggaggccgag atgacaatac      3600
     atatcaatca acgaatcttt tggtcagact caagagacgt tctatgttgg atacggtctg      3660
     atgcgcgcaa atttaaccaa ttcgtggcag tacgagttgg ggaaataacg ttgccgacga      3720
     cggtaccaaa tggacacgag acccaagttt cgacggatcc tcacggtggt tcgtcggccc      3780
     gggatttctg tatcgaggag aagaccagtg gccggatatg aatccctcta caaagaacga      3840
     agagatcatc atgcaccacg agaagagcca caccgaaaca cccgcaatag cctgtattgt      3900
     accggatccg caacgcttta gcaagctgga aaaactgcgc tccacgcaaa gcaaagttct      3960
     tcaattcctg cgtttggtaa ttaaggaacc caaagatggc catctacaac agctgctaca      4020
     cctgaagcgg gcagtagact cggatgtgat tctggtgcga gtcagtcagg aaatggagtt      4080
     tcccgaagaa atcaaaaccc taagagcggg taacaacgta tacgatcgct agagcccatt      4140
     gtttaagtgc tccccattcc tagacgaatc tggcgtgatg cgagtaaaag gccgcataaa      4200
     cgcgattgag ggagtagagt tggatgtgaa gcagcccata atcctatcga gacgccaccg      4260
     ggtgacatat cttattgcgg attactacca ccgacggttt caccatttga acgacgagat      4320
     cgtcgtcaat gaaatgaaac agcggtattg gatcaaagga ctaagggccc tcgtaaggga      4380
     ggttgccaag gattgtccga ggtgccgcat acgtaacgcc cgacccgcgc ctccagaaat      4440
     gggaagtcta ccgcaggagc gtctctctcc gtacactctc ccgtttacat tcaccggggt      4500
     ggactacttc ggacctatcg atgtcgtagt gggacgtaga cgggagaaaa gatggggcgt      4560
     gctgtttacc tgtctcacga ctcgagcagt gcatctggag gttgcggtct cactctctac      4620
     ggactccttt ttatgtatcc tgaaaacatt cgtagcccgg cgaggtgtcc cgcggcggat      4680
     cctatcagac aacggaacaa cctttcgagg agcaaacgga gccctgcagc atcatataga      4740
     gcgcatatca acgtccgcaa tcgaacgaga atacccaacg ttggagttta gcttcaaccc      4800
     tcctggtgcc ccccccgggg ggggggtggg aatcacccgt ttaactaaat ttttatttaa      4860
     cgagattctc cccgcagaag gtctacgaga ggaagtactt cgagccgctt tcgctgacgt      4920
     ggagcacacc ctgaactgcc gaccgcttac ctacgtgccc ctggacgacg cggacgcgga      4980
     agctcttacg cctaaccatt tcttagtggg caactcaagt ggtttgcggg aaagaggatc      5040
     actaatccaa gctggtgatc gactggccaa aagttacaga atcgcaagtc agctagccga      5100
     tcgcttttgg aagaaatggc tacgggaata tcttccaacg ctcacgagga gaactaaatg      5160
     gttccagccc ccgccgctgc cgctcgctat tggggacctg gtaattattg tagacgaaaa      5220
     tgccaaaagg aacacgtggc tgagaggtcg gatcgttgac gttcaccaag gggccgatgg      5280
     ccaagttcgc agcgccgtgg tgcgcactgt ggacggactg gttacccgac cgtcggtaaa      5340
     gctggccaag atggacatat tacctggtaa cccaccgcga aagcaggtga attacgaggg      5400
     ggggaa                                                                 5406
//
ID   BEL-31_DTa-LTR repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-432
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5658-5658 (2021).
XX
DR   [1] (Consensus)
XX
CC   >98% identity to consensus.
XX
SQ   Sequence 432 BP; 117 A; 114 C; 96 G; 105 T; 0 other;
     tgttgcgtcg gcaacttaaa tatcgccgcc gcgaccatgc atcttgtccc attcgcactc        60
     acaattcatc gccccgtact caacgcgccc aaaaccgcgg tggcgccgat gcgcccctgc       120
     aagatcgcga aaattttcga gaatttaccg cttcgaagcc gcggtactga catctctttc       180
     tctcttgcac gtctccgctg ccaaagccac gcagtgaagt tgcgcagttg taaaaagttg       240
     gcgaacggcg tagacgtgcg agcagacaag gagagcacaa atgtaagatt atgtaaatga       300
     attaacacaa atgctaacat gaaataaaga tttcagttgt tatttttctg atcgactgtt       360
     tcacaaattg aactactcga agtctgtgtt ttacgtggaa ggaacgtctc tcgcaccagt       420
     cgcgagccaa ca                                                           432
//
ID   BEL-31_SiCu-I repbase;    DNA;    INV; 5647 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5647
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5005-5005 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           102..5249
FT                 /product="BEL-31_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MAAAKQFEKDEADREFIRDNLKFLDTAFASNTTTALT
FT                 SVQVERYLQQAQDLDREVETNHNQLRRHAASTTDFKPYTEDFFVLRAMASR
FT                 LINGFHGLKAAFPPPRTTRTTTSTTAPPPPPPQTIRLPPLELQKFSGNLQD
FT                 WVPFRDQFITAVHNSSLSNVEKLTHLKSLLTGEASRQVRSLVLCDANYDIA
FT                 WKALQERYENNRELLFSILKRLLNQPPVKGSSSSIKDLIDTTKECVRSLEI
FT                 LSIPTQHWDAILLFLLFSKLDPTSRELWEQSLTDTSIPPLNRIYEFLEQRA
FT                 RALAASNVPAPRPPAKPQQQMVRAHHIAAPHCKFGCSSSHLYFKCPVFNGK
FT                 TSSQRLDTVKKLNLCVNCIQDGHSSSSCPSDKRCKICNKAHHTMLHLDNRP
FT                 QQQNQSDGKDSSSSSSGVQNHHISHGGLSTGILATARVNIITPFGRQLRRS
FT                 LVDGGSTNSFITERTARQLRLPLRPCNIPMTGLSAASVGSAKYVTSFSFTS
FT                 HSNSLVSYSATALVVKSITTVPFEKLQKDKWTHLKHLELADPDFHLPASCD
FT                 ILLGTDVFWSILENEKIAGAAGEPFAVKSSLGWLVAGPNSTATPVTIFNTT
FT                 VDLDFQLRRFWEQETVPEGPIISSEEAACEEHYKSTYKRDSNGRFTVSLPF
FT                 KTNSKKDLGSSRQSAVKRFISMEKRFSQPNTKDLESLRRLQSQWSLYKDFM
FT                 KEYEDLGHMQQVPADEINCEKTTYYIPHHSVLKESSTTTKLRVVFDASATT
FT                 TTGISLNQCLMVGPQLQDPITDIMLRFRTHPIAFTADVTKMYRQIRVTPED
FT                 TDFQRIVWREHPSLPLRDYRLLTVTYGTSSAPYLAIKTLQQLAKDEESTYP
FT                 DAAKIALRDFYVDDTASGCDTIDTAKKTVKQLMDLCAAGGMELRKWTTNSP
FT                 ELLSSIPNHLRETNPLVELQTDATVKTLGVYWNTTHDTYFFKLSLPVATPG
FT                 SYTKRVILSEIARIYDPLGWLAPVIISCKIFMQELWKVQLGWDEVLPSTLQ
FT                 DNWMTMRDSLGDLEKLNIPRCVTPSSSSRLILVGCSDASIKALSASVYVVC
FT                 EYGDMSPICHLLTSKTKVAPVKHVTLPRLELNAAVLLADLLRSVIKALQLQ
FT                 FTAVRAFTDSMITLHWIKSSPLRWKTFVRRRVQAIQNNAPEAEWFHISGEQ
FT                 NPADCASRGIPAAELLQHPLWWNGSPEFVITSKSPTDLHQEEIAQLQAESQ
FT                 VSQAHHLKASPLPQFYNKFSSFRRFVRVMAYVWRFIRKTRLIPNPSGPLIV
FT                 EELTTSHNTILRFLQEAVFPVEYDILNKKLSLPSSNSLVKLQPFISDDGLI
FT                 RVGGRLRNANMAFDQKHPILLPRKTQVTTSIIWDIHITLLHAGPSSVLATL
FT                 QQRYWITNGRDSVRDVTRRCVKCARHKAALMKQIMGDLPAHRITPSRPFSK
FT                 VGVDYAGPISIRPMVRSKVTLKCWLSIFICFTTHAIHLEVVSSLSTDCFIA
FT                 ALRRFVARRGRPTDIFSDCGTNFKGTDKVLQDFSSINQQQAIHDECSNQSI
FT                 TWHFNPAGAPHFGGLWEAGVKSMKYHLRRIMGSSLLTYEEMHTLVTQIEGI
FT                 LNSRPLVPASSDPSDLGVLTPAHFLIGAPITAVPEPSLVDEKESHLKRWQL
FT                 LQQRQQLFWKRWSSEYLSRLQQRPKWWTPSPNLEVGHLVLIKDERLPPLKW
FT                 KMGRVIAVHPGNDKRVRVATLRTSDGDIKRPIVKLSLLPIPIHNSEQ"
XX
SQ   Sequence 5647 BP; 1459 A; 1694 C; 1166 G; 1328 T; 0 other;
     ttttttggtc ctttacgagc ggatatctac ctggatttca acatttagta aggaataatt        60
     gaagcatttt aattaattaa attgttctac aacaattgaa gatggcagcc gctaaacaat       120
     tcgagaagga cgaggcagac agagagttta tcagggacaa cctcaagttc cttgatacag       180
     cctttgcctc caacacaact acagcattga catcggtgca ggtggaaagg tacctacagc       240
     aagcccagga ccttgaccga gaagtggaaa caaaccacaa ccagctccgt cgccatgctg       300
     ccagcacaac tgacttcaag ccctacaccg aggacttctt tgtgctacga gcaatggcaa       360
     gccgactcat caacggcttc catggactca aagcagcgtt tccaccaccg agaactacaa       420
     ggacaaccac ttctaccact gctccacctc caccgccgcc tcaaaccatc agactcccac       480
     cactagagct tcagaaattc tccgggaatc tccaggattg ggttcccttc cgggatcagt       540
     tcatcacagc tgtccacaac tcatcactca gcaacgtcga gaagttgacc cacctcaagt       600
     cacttctcac cggcgaagca tcacgtcagg ttcgctccct cgttctctgc gacgcgaact       660
     atgacatcgc ttggaaggcc cttcaggaac gctacgagaa caacagggag ctgctgttct       720
     caatcctgaa gaggctcctc aaccaaccac ctgtcaaagg atcatcctcc agcatcaaag       780
     accttatcga caccaccaag gaatgcgtga ggtctctgga gatcctgtcc atcccgactc       840
     aacattggga tgccatcctt ctctttcttc tcttctccaa actggatccg acatcacggg       900
     agttgtggga gcagtcactc accgacacca gcatccctcc tctcaacagg atctacgagt       960
     tcctggaaca gcgtgcccga gccctagcag ccagcaatgt tccagctcct cgacctccag      1020
     ccaaacctca acaacagatg gtccgtgccc atcacatcgc cgctccacac tgcaagtttg      1080
     gatgcagctc atcccacctc tacttcaaat gccctgtctt caacggaaag acctcatcac      1140
     aacgcctgga cacagtcaaa aagctcaatc tgtgcgtcaa ctgtatccag gatggccatt      1200
     catcatcatc atgccccagc gacaagcgtt gcaagatctg caacaaagct catcacacaa      1260
     tgctccacct ggacaatcga ccacaacaac agaatcaatc tgatggaaag gattcatcat      1320
     catcgtcctc tggcgtccag aatcaccaca tcagccacgg tggtctctcc acaggaatcc      1380
     tagccacagc tcgagtcaac atcatcacac cgtttggaag acaactccgg cgctctctcg      1440
     ttgacggtgg atcaaccaac tcgttcatca cggagcggac agcaagacaa ctacgactgc      1500
     ctctccgccc ttgcaacatc ccaatgactg gactgtcagc tgcttctgtg ggatctgcca      1560
     agtacgtaac ctctttctct tttacatctc attctaattc acttgtctct tactccgcta      1620
     cagctctcgt tgtcaagagc atcaccactg ttccgttcga gaaactgcag aaggacaagt      1680
     ggacacatct taagcacctg gagctagccg atcctgattt tcatctccct gcctcctgcg      1740
     acattctgct tggcaccgat gtcttctggt ccattctcga gaacgagaag attgcaggtg      1800
     ctgctgggga acctttcgcc gtaaaatcat cacttggctg gttggttgct ggaccaaact      1860
     caacagcaac tccagtcacc atcttcaaca ctacagtgga cctcgacttc caactccgcc      1920
     gattttggga acaagagact gttcctgaag gccccatcat ctcatcagag gaagcagctt      1980
     gtgaggagca ctacaaatcc acctacaaga gagacagcaa cggacgcttc accgtctctc      2040
     ttccattcaa gaccaacagc aagaaggatc tgggttcatc tcgacaatca gccgtcaagc      2100
     gcttcatcag tatggaaaag cgcttcagcc agcccaacac aaaggatctg gaatccctcc      2160
     gtcgcctcca atctcagtgg tcactctaca aggacttcat gaaagaatat gaagaccttg      2220
     gccacatgca acaagttccc gcagacgaga tcaattgtga gaagactacc tactatattc      2280
     cgcatcactc cgtcctcaag gagtccagca cgaccaccaa gctacgcgtt gtttttgacg      2340
     catccgcaac aacaacaact gggatctcgc tcaaccagtg ccttatggtc ggtcctcaac      2400
     tccaggatcc catcaccgac atcatgctac gcttcagaac gcatcctatc gcgttcacag      2460
     cggacgtcac caagatgtac cgccagatcc gggtcacgcc tgaggacacg gacttccaga      2520
     gaatcgtgtg gagggagcat ccttcacttc cactacgaga ctaccgactt cttaccgtga      2580
     cgtacggtac ctcatcagct ccttatctcg ccatcaagac tctacaacaa ctcgccaagg      2640
     atgaggagtc aacttatcct gacgctgcca aaatcgcact gcgcgatttt tatgtggacg      2700
     acacggcctc gggttgtgac acaatcgaca ccgccaagaa gactgtgaag cagctcatgg      2760
     atctctgtgc agcgggagga atggaactcc ggaagtggac aacgaacagt ccggagcttc      2820
     tatcgtctat cccgaatcat ctccgtgaaa ccaatcctct cgtggaacta caaaccgacg      2880
     caacggtaaa aaccctcggt gtctactgga acacaaccca cgatacctac ttcttcaaac      2940
     tgtcgcttcc tgtcgccact ccgggatcat acacgaaacg tgtgatcctc tcagaaatcg      3000
     ctcggatcta cgatcccctt ggctggttgg ctcccgtcat catttcctgc aaaatcttca      3060
     tgcaggaatt atggaaagtt caactgggct gggacgaggt tcttccatca acgcttcagg      3120
     acaactggat gaccatgagg gactcgcttg gagatctgga aaaactcaac attccaagat      3180
     gtgtgactcc ttcttcgtcg tctcgcctca tcttagttgg ctgctcagac gctagcatca      3240
     aggccctcag tgcttcagtg tacgtcgtct gtgagtacgg ggacatgtca cctatatgtc      3300
     acctactcac ctccaagacc aaggtagcac ctgtgaaaca cgtcactcta ccgcggttgg      3360
     aactgaatgc tgccgttctt ctcgccgacc tactacgttc agtcatcaag gccctccagc      3420
     tacaattcac cgctgttcga gccttcaccg actccatgat cacgctgcat tggatcaaat      3480
     catcgccatt acgatggaag acattcgtcc gacgccgagt ccaggccatc cagaacaacg      3540
     ctccagaagc tgaatggttc cacatctcag gagaacagaa tcccgctgac tgtgcctctc      3600
     gtggaatccc tgcagcagaa ttactccagc atccgctttg gtggaatggt tcaccagagt      3660
     tcgttatcac ctctaaatcg cctactgacc ttcatcagga ggaaatcgct caacttcaag      3720
     ctgaatcgca ggtcagtcaa gctcatcatc ttaaggcctc accgctaccg caattctaca      3780
     acaaattctc cagctttcgg agatttgtcc gggttatggc ctacgtctgg cgcttcattc      3840
     ggaagacacg gcttatcccg aatccctcag gaccattgat agtggaggag ctcacgacgt      3900
     cacacaacac catcctccgc ttcctacaag aagctgtttt tcctgtggag tacgacatcc      3960
     tcaacaagaa gctctcactc ccctccagta acagtttggt caagctgcag cccttcattt      4020
     cggacgacgg actcatccgt gtcggtggac gcctacgaaa tgctaacatg gcatttgacc      4080
     agaagcatcc tattctccta cccaggaaaa cgcaagtcac cacatcaatc atctgggata      4140
     tccacatcac tcttcttcac gcaggaccct cttccgtgtt ggctactctc cagcaacgct      4200
     actggatcac caacggaagg gacagcgtcc gtgacgtaac caggaggtgc gtcaagtgtg      4260
     ctcgtcataa agcagcgctc atgaaacaaa tcatgggcga tctcccagct catcgtatta      4320
     ctccatctcg tcccttctcc aaggttggag ttgactacgc tggaccgatc tctattcgcc      4380
     ccatggtcag aagcaaagta actctcaaat gttggctctc catcttcatc tgcttcacca      4440
     cccacgccat tcatctggaa gtggtcagct ccttgtccac tgactgcttc attgccgcac      4500
     tgaggaggtt cgtcgccaga agaggcaggc caactgacat cttcagtgac tgtggaacca      4560
     acttcaaggg caccgataag gtgctccagg acttctcatc catcaaccaa caacaagcaa      4620
     ttcacgacga atgctccaac caatcaatta cgtggcattt taacccagct ggagctccac      4680
     atttcggcgg cctctgggaa gcaggggtca aatcgatgaa atatcatcta cgacgcatca      4740
     tgggatcatc gctcctcacc tatgaggaga tgcacactct cgtcacgcaa atcgaaggga      4800
     tcctcaattc tcggcctctc gtccctgcct ccagcgatcc gtcagatctt ggagtattga      4860
     caccagctca cttcctcatt ggagctccta tcaccgcagt accggaacca agcctcgtgg      4920
     acgaaaagga atctcacctc aaacgttggc aacttcttca gcaacgacaa caactcttct      4980
     ggaagcggtg gtccagcgag tacctttcca gactccagca gcggccgaag tggtggactc      5040
     cgtctcccaa cctggaagtt ggacatctag tcctcatcaa ggacgaacga cttcctcctc      5100
     tcaagtggaa aatgggtcgt gttatcgcag ttcaccccgg aaatgacaaa cgcgttcgag      5160
     ttgcaactct aaggacctcg gacggcgaca tcaaacgacc tatcgttaag ctaagtttat      5220
     tgccaatacc tattcataat tctgaacaat aatgctcgta cttctcccac agaccatttg      5280
     ccattaatct tgttttttgt ttcttgacat ttcagacaat ccatgtgacc aacgtcggca      5340
     ttatggagtg gatacggagg aaaccgtggc cctctctccg ccataagcag gggtgaacct      5400
     gtttacagcg cgatgtgggg aagcgacttt gctacaggac ctttgtctgt aggatcctct      5460
     gtaccatctc cacttgccac caaaatgatc gtagtctatg gatatagtct gtatttgtct      5520
     taccattaat tataatttta atcattgacc ttatttcatt tttccgactt gtaattcact      5580
     gttacattca ttgttaattt cattttttaa ttctttgtgt tgctgactaa gcaacaggcc      5640
     gggagaa                                                                5647
//
ID   BEL-31_SiCu-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-597
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5028-5028 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 597 BP; 164 A; 152 C; 69 G; 212 T; 0 other;
     tgtctgtacg acgcatataa tagtgtatgt caaataagta cctagatgta atcttgtaaa        60
     attccagtat gtttcatcct aatctgtata ttatgctaat gagtattgac cactcaaaac       120
     cttcactatt tattcattct ttaatcctca atgtaagaat tttgtctctt tgttcaatgt       180
     tcatagttca catttttctt tacattggtt acacgtgtga cctaaatcga ttgtaaaact       240
     gacgttttcc tttcaacata acttaccatg tatattcact tctcatttga cctcgcgtga       300
     gaccagtcac tttggcagag accaacctct ccaattttac cttttacatt caataaacca       360
     atactttaca ttgagactaa ctaactcgcc tttagcgtct cttttctctc accacctcag       420
     gtggcatctc tcatcatttg caatagtcgc attgcatttt tctcaactca actctgtttg       480
     gcttatcccg aatccttcaa acaaccttct caactgctaa gcatcatcct gcctcattta       540
     ccatcaccac ctttaaaaag cttcaatcct acgaccgtgc taatcttcag cacacca          597
//
ID   BEL-31_SpEx-I repbase;    DNA;    INV; 6035 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6035
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6910-6910 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           879..6032
FT                 /product="BEL-31_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MASKSVKADEADLIKQRGIIKRKLTLFKKYIHFIQNN
FT                 QSLTDIQVIELKNRLTEFKYIHKTFHEIQTLIELNMNISESSDEPDPECEQ
FT                 FENDYQLMVAQASQLIQLNDKPVTNSESNKEHSGGTKSFIKLPTIDLPHFS
FT                 GDHHDWLEYREIFQSLINRHKTLDNIQKFHYLRSSLSGSASLVIKSIEMTG
FT                 DNFEVAWKLLCERYDNKRQLIGNHVHALFNINHIQKESSVCLRQLSDTIHK
FT                 NLRALATLGEKTEYWDTLIIYLVSSKLDSNTLRYWEEYKNTLTDMPTLDCL
FT                 KKFLKNRADLLETLEEAKINNNISKTESQVGHNTKSFTKHHTPKEPTCSIC
FT                 KQHHLLFSCERFRQMSIEQRIKEVEKSKVCSNCLHPGHDYKSCRGGACKYC
FT                 NKKHNTLLHLEAPKSSSVTLTSYTQSKTVLLSTAQVNILDKHGKPHTARAL
FT                 LDNGSTSSYITRKLCSKLGLPIHTIDATVTSINNQCTNITENTNIQIHSPH
FT                 NKNYSTNTLCLIINQISNSVPHTYIHRNTIQIPSCIQLADPDFNIPAPIDL
FT                 LLGADIFWQVMGTGKIPLGKQQPVLQETELGWLISGCISDIQTQNTNQNSS
FT                 FFVNQISDNMNRFWELENISTPSDISQIAQQTCEEIFTSTTTRKDDGRFVV
FT                 TIPFKQSPECLGQSYNQAKNRFLNIEKRFKSDPTYKQQYLTFMQEYLDLGH
FT                 MTKNTYRNTQTPSYYIPHHGIIRETSTTTKFRAVFDASARTSNKISLNDIQ
FT                 TIGPVVQDDLISILIRFRQHKYIVSADIEKMYRQIEIIEKQRPLQQIVFRF
FT                 DESKPVDTYTLNTVTYGTASAPYLATRCIKQVGLDCQHDKDVSEVIMRDFY
FT                 CDDLLTGSDKKSRLIDIALSVNTALKSAQFPLRKWQSNDLEILQKANLLSN
FT                 SLHSTINLGTKEPSKTLGIYWNTNQDTITYSTNIENSVSDNITKRKILSII
FT                 GQIFDPLGLISPSVLEAKIIMQKMWSLNLQWDNHVPHDIEVLWKKFIQSLS
FT                 ALKQLVIPRRVFYDSSKHIQLHIFCDASQNAYGGCVYVRSHTTKDEVYVQL
FT                 LTAKCRVAPLKTLTIPRLELCAALTAVRLYKKVIDSLRNSHIISNCFFWSD
FT                 SMIVLSWIKLSPYKLNAFVSHRINEIQTITHKHTWRYVPTKQNPADLISRG
FT                 VTASVLINSDMWFSGPDFLRDDDSSWPTPPGHISNYSDLPETKPQTNHTNT
FT                 NQCYTQIDNNSFIYNYSNFTKLTRVTAYIRRFIHNCKNKIHKGNSASNNFI
FT                 SLTTKELNQAKLNLVKITQLNSFSEEYELLSTNRSLPVKNRLNSLHPFFDQ
FT                 AGGVIRVGGRLANSRFQYDKKFPMLLHANHHICKLIFCTYHRTLLHAGPQL
FT                 LLAHIRETYWPISGRNLARKTVQSCITCRRFQGKTITPIMGNLPEPRMHSD
FT                 FAFSHVGVDYAGPIMISNRKGRGSQLIKSYICVFVCLAVKAVHLELVTDLT
FT                 KESYLASLNRFISRRGKPTHIYSDNGTNFVGASNVITGFLAENQNSIRDSA
FT                 AEQGITFHFIPPCTPHFGGLWESTVKSTKHHLKRVLGLAHLTYEEMYTVLC
FT                 QIEGILNSRPLTPLSSDPSDLSVLTPFHFLIGRSLSVIPQPELGDINPLLL
FT                 PRYKRVELLRQHFWTRFYKEYISQLQIRTKWKQSSGQQLTEGTLVVVKDDA
FT                 LPPARWVLGRVTQLHPGPDGITRVADIRTSTGTIRRAFNRICPLTCGPA"
XX
SQ   Sequence 6035 BP; 2102 A; 1398 C; 989 G; 1546 T; 0 other;
     tggtccattc gccggaatag tgcaagtaaa acatccacga agcagtgtac gcgacgcgtc        60
     tcggtcgccg ccgccattac aaaatcagaa cacagaacca gacccagcga cgtgcaacca       120
     cgtgcgacga tatcacgcaa gacttcggcc tcctgcaact acgtgcgagt acgacgtgaa       180
     cacagaaaca aactacagat caagatcatc catcacagaa atcagatcca cgtgctccgt       240
     aatcacagaa aagtcttcgt cctgcaacca cgtgcgacag cgacgtgacc aacacagaaa       300
     tcagacccag cggcgagctt ccacgtgcac cacaaccatc acagcctcag gatcattaca       360
     gataactgac caattatttt tcatcccatt tttttatcaa tttcaatacg tttcagagtc       420
     agacccccct cttttttcga actattacac aaagtagtgc atattcacat tcatttttcc       480
     aatttttatt aattacgctt tttctaaatt tcataacctc taaataatca aggtcaatca       540
     tcccttcaca tcaaaataac tttattgcgt catactaatg ccactaataa tatttcacag       600
     cattacaatt gcttgccgtg ctgctgtgcc gtgctgatca agcgtggatt tccagccaac       660
     gctcagagcg cgtggttcct ccaggtggtc gcccaccacg tgcatgcgcc ctcgcccgcc       720
     acgtgttagc tctgcactgc acagcctagc ttttgccttt gttctgcact gcactgcacg       780
     ctaatttgag tattgcacga ttattttgca taaacacttg tgatagcatt tgcctacttg       840
     caacattttt aattgtgtga cgctaatcct tcacagtcat ggcctctaaa agtgttaaag       900
     ccgatgaggc agatttaata aaacaacgtg gcatcattaa aaggaaactg accttattca       960
     aaaaatatat acacttcatt caaaacaatc agtcattaac agatattcaa gtaattgaat      1020
     taaaaaacag acttacagaa ttcaagtata ttcataaaac ttttcatgaa attcagacat      1080
     taatagaatt aaacatgaac atttcagaat cctccgatga gccagatcca gaatgtgaac      1140
     agttcgagaa tgactaccag ctaatggtgg cacaggcttc tcagctgatt cagttgaacg      1200
     acaaaccggt aaccaattca gagtcaaaca aggaacattc aggtgggacc aaatcattca      1260
     ttaagttacc taccattgac ttaccacact tctcaggcga ccatcatgat tggctcgagt      1320
     acagggaaat atttcagtca cttatcaaca gacacaaaac actggacaac atacaaaagt      1380
     ttcactactt acgttcctca ctatcaggca gtgcatcatt agttatcaaa tccatagaaa      1440
     tgacaggtga caactttgag gtagcgtgga aacttttgtg tgaacgctat gacaacaaac      1500
     ggcaactgat aggtaaccat gttcatgcat tattcaacat aaatcacatt cagaaagaat      1560
     cttcagtgtg tctgagacaa ttatcagata caatacacaa aaacctcaga gcattagcca      1620
     cactaggtga aaaaacagag tactgggata cattaataat atacttagta tcaagtaaat      1680
     tggactcaaa tacattgaga tattgggaag aatacaaaaa cacactcaca gatatgccca      1740
     cacttgactg cctgaaaaag tttttaaaaa atcgtgcaga tctattagaa actttagaag      1800
     aagcaaaaat aaataacaat attagcaaaa cagagagtca agtgggacat aacacaaaat      1860
     cattcacaaa acatcacaca ccaaaagaac ctacatgttc catttgcaaa cagcaccatc      1920
     tattattttc ttgtgaaaga tttagacaaa tgtccatcga acagagaatt aaagaggttg      1980
     aaaaatcaaa agtctgttcc aactgtttac accccggtca tgactacaag tcatgcagag      2040
     gaggagcatg taagtactgt aacaaaaagc ataatacact tctacactta gaagcaccaa      2100
     aatcatcatc agtcacactc accagttaca cacagagcaa aacagtatta ctatcaaccg      2160
     cacaagttaa catactagac aaacatggaa aaccacacac agcaagagca ctactggaca      2220
     atggcagcac ctcaagctac attaccagga aactgtgctc aaaactaggt ctacccatcc      2280
     atactattga tgctactgtc actagtatca acaatcagtg cacaaacatt acagaaaaca      2340
     ctaatattca gattcattca ccacataaca aaaattacag cacaaacaca ttgtgtctta      2400
     taatcaatca gatttccaac tcagttccac acacatacat acacagaaac actattcaga      2460
     tacctagttg catacagcta gcagacccgg actttaatat tccagctcct attgacttat      2520
     tgctaggtgc agacatattc tggcaagtca tgggtacagg aaaaatacca ttaggtaaac      2580
     agcaaccagt cctacaggaa acagagttag gctggttgat atcaggctgc atttcagata      2640
     ttcagactca gaacacaaat cagaactctt cattctttgt caatcagatc tcggacaaca      2700
     tgaacagatt ttgggaattg gaaaacattt caactccttc agatatatct cagattgctc      2760
     aacagacatg tgaagaaata ttcacatcaa ccacaactcg taaagatgat ggcagatttg      2820
     tggtaaccat accatttaaa caatcaccag aatgcttagg ccagtcatat aatcaggcaa      2880
     agaatcgttt tctaaacata gaaaaacgat tcaaatcaga ccctacatac aaacaacaat      2940
     atttaacttt catgcaagaa tatcttgacc taggtcacat gaccaaaaac acatacagaa      3000
     acactcagac accttcatat tacataccac atcacggtat aatacgtgaa accagtacta      3060
     caacaaaatt cagagcagtt tttgacgcat cggcacgtac atctaacaaa atttcactta      3120
     atgatataca aacaataggt ccagtagtac aagatgattt aatttcaatt ctcatcagat      3180
     ttagacaaca caaatacata gtatcagccg acattgaaaa aatgtaccgg caaattgaaa      3240
     ttatagaaaa acaaagacca ttacaacaaa tagtatttcg tttcgatgag tcaaaaccag      3300
     tagacacata cacattaaac acagtaacat atgggacagc ttcagcaccc tacctagcca      3360
     cacgttgcat caaacaggtc gggttggact gccaacatga caaagatgta tcagaggtaa      3420
     tcatgcgcga tttctactgt gatgacctac taacaggatc tgataagaaa tcccgtttga      3480
     tagacatagc attgtcagta aatacagctc taaaatcagc acaatttcca ctcagaaagt      3540
     ggcagtccaa cgatctagag attttacaga aagcaaattt attatcaaat tcactacaca      3600
     gcaccattaa tttaggtaca aaggagccat caaaaacatt aggtatctac tggaacacaa      3660
     atcaagatac aattacatat tcaacaaaca tagaaaattc agtcagtgac aatatcacca      3720
     agaggaaaat attgtccatt attggccaaa tatttgaccc cttgggcctc attagtccct      3780
     cagtcttaga agctaaaata atcatgcaaa agatgtggtc attaaatctg caatgggata      3840
     accatgtacc tcatgacata gaagtattat ggaaaaagtt catacagtca ctatcagctt      3900
     tgaaacaatt agtcatacca agacgagttt tctatgattc atctaaacac atacagctac      3960
     acatattttg tgacgcatct cagaatgcct atggcggctg tgtatatgtg cgttcacaca      4020
     caacaaaaga tgaggtgtat gtacaactat taacagcaaa atgtagagta gccccactaa      4080
     aaacattaac aattccacga ctagaacttt gtgcagcact aacagctgtt cgcctttaca      4140
     agaaggtcat tgactccctc cgtaactcac acatcatttc aaattgtttc ttttggagtg      4200
     attcaatgat tgttttgtca tggataaagt tgtcaccata caaactaaat gcattcgtaa      4260
     gtcacagaat caacgaaata caaaccatta cacataaaca tacatggcga tatgtaccta      4320
     caaaacagaa ccccgcagat ctcatatccc gcggcgtcac agcatcagta ctcataaatt      4380
     cagacatgtg gttttctggg ccagactttc tcagggatga tgacagcagc tggcctacac      4440
     cacctgggca tatcagcaat tattctgacc tgccagaaac aaaaccccag acaaaccaca      4500
     caaacactaa tcagtgttac acacagatag acaacaattc atttatttat aattactcta      4560
     atttcacaaa attaacacgc gtaactgcat acatacggcg gttcatacac aattgcaaaa      4620
     ataaaataca taaaggtaat tcagcttcaa acaattttat ttcattaaca acaaaggagc      4680
     taaatcaggc taaattaaac ctagtaaaaa ttacacagtt aaattcattt tctgaagaat      4740
     atgaattgct ttcaactaat cgttcattac cagtaaaaaa cagattaaat tcattgcatc      4800
     cattttttga tcaggccggc ggagtcattc gcgtgggcgg caggctcgct aattcgcgat      4860
     ttcaatatga taaaaaattt ccaatgcttt tacatgctaa tcatcatatc tgcaaactta      4920
     ttttctgcac ttaccacaga acacttctcc atgctggtcc acagctgcta cttgcccaca      4980
     tacgggaaac atactggccc atcagtggtc gcaacctagc cagaaaaact gtacaatcct      5040
     gtattacttg tagacgcttt caaggtaaaa ccattacacc aatcatgggt aacttaccag      5100
     agccacgcat gcattcagat ttcgcattta gtcatgtcgg tgtagattac gccggaccaa      5160
     tcatgatcag taaccgtaaa gggcgtggta gtcaattaat aaaatcatac atatgtgtat      5220
     ttgtatgcct tgcagttaaa gctgtacatt tagaattggt taccgatttg acaaaagaat      5280
     cttatttagc atcattaaat agatttatca gccgcagagg taaacctact cacatttatt      5340
     cagacaatgg cactaacttt gtaggagcgt caaatgttat cacaggtttt ttagcagaaa      5400
     atcagaactc aattcgtgac agtgctgcag aacaaggtat cacttttcat tttattcccc      5460
     cctgtacccc acactttggt gggctatggg aaagcacagt caaatcaaca aaacatcacc      5520
     ttaagagagt cttaggctta gctcatctca catatgaaga aatgtacaca gtcttatgcc      5580
     aaattgaagg cattctaaat tcaaggcctt tgacgcctct ctcctcagac ccgtctgacc      5640
     tctctgtcct taccccgttc cacttcttaa ttggtcgttc actatctgta atacctcagc      5700
     cagaactggg tgatatcaat cccctgcttc tgcccagata taaacgcgtt gaattactgc      5760
     gtcaacattt ttggacgcga ttttataagg aatacatctc ccagcttcag ataaggacca      5820
     agtggaagca gtcatctgga cagcagctga cagaaggcac cttggttgtc gtgaaagacg      5880
     acgctcttcc acctgcccgc tgggtccttg gacgagtgac acagctccat ccgggacctg      5940
     acgggatcac cagggtggca gacatcagaa caagcacagg cacaatcaga cgggcattca      6000
     accgcatatg ccctctcaca tgcggcccgg cagaa                                 6035
//
ID   BEL-31_SpEx-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-31_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-257
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6938-6938 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 257 BP; 58 A; 87 C; 62 G; 50 T; 0 other;
     tgtctatgac acacagcgcg ttgcgcgtcc cgcgcctcgc cgccttcaca tttccgccgc        60
     ccgcgcaacg gaccaatcag gagagaccac ggcccgcgcc ggccggcgga gctgcgcgcg       120
     ccaccggcga gagcgaacca cttttcaccg agcactggac tggaatacac gtcaactatt       180
     gtcggggtgc actatccttg taaaaaacca gtaatacagt ccactagtta taccatcttt       240
     tatttatggc ctcaaca                                                      257
//
ID   BEL-32_AA-I repbase;    DNA;    INV; 5529 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_AA_;
KW   BEL-32_AA-LTR; BEL-32_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5529
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  243582  238054.
XX
CC   Positions [4442-5044] - Integrase core
CC   'GCAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           642..1958
FT                 /product="BEL-32_AA-I_2p"
FT                 /translation="MSHLEGEAKSLVSSYAITDVNYKEVWDTLVEQYDKPK
FT                 FAVSALVQEFCDQPVIKTANLVNLRKLVSTSDEVIRQLKAMGAAYETRDPW
FT                 LIHIVVKKLDDNVRSQWAAHIVDIDNPTFEELLKFLKRKCDTFETCAAFSG
FT                 KQSDYVKKDIFKEERKNPAVKREVSNFGVTQQSCPICSSGDHVIYQCTTFK
FT                 EATVKERRDMALQMRLCYNCLRSNHCAKSCPSKSVCRTSDCQQRHHTLLCQ
FT                 YDKAEVNSNVSTIEDKVVPATTTSETEDNTELVSCSANVKATTSVFIATLP
FT                 TAVVRVRGKDKQFHEVRAMIDSGSQSSLISEHCVTVLGLEKENAKLIVSGV
FT                 GSGATETTRGVVNLEISSRFDDNLICRTKAFVLSKLATNLPSRQIDTSRLK
FT                 CLESLRLADPHFEKPRKIYVILGVDVFLSVVQDGKVKDDMGLQWH"
FT   CDS           2264..5053
FT                 /product="BEL-32_AA-I_1p"
FT                 /translation="MHRKFASDPVFKKLYCDFMAEYLQLGHMERIPDAEIE
FT                 MPSDQRYYFPHHAVLRSESLTTKLRVVFDGSCETATGVSLNDRLLVGPKVT
FT                 EDVPVVFTRFRTYVVAFTADVEKMYRQVKVRKEDTNYQRIIWSPEPGKPFE
FT                 HYRLLTVTYGSSCAPYLAIESLRQAARDCQSQYPEAAEHVSKNFYVDDLLS
FT                 GANTLEEAIKLRNDIIQVTSTAGFTLRKWSSNDPRLFDESTETDAAVPLHL
FT                 APDADSVKALGIQWYPATDTFGYQLKMDFNKRNTKRQMLSDSARLFDPLGW
FT                 VAPIIVRIKILFQSLWLQDLLWDDPLPAAIDDEWNKIKNDLQAIEKIRIPR
FT                 WIPHHGGKVQLFGFADASEAAYAAVVYARSTDQNGKIFVSLVASKTKVAPI
FT                 QQVSLPRLELNAAVLLTDLMKQLMQSLSHLDVTCYALTDSEIVLGWLSSHP
FT                 RKWKTYIANRTSMILEFLPRSSWNHVASADNPADCASRGLYPADLVNFSLW
FT                 WKGPSWLYQSDETWNRHPAVMVPDPLLTDQECSSQCLMVASSGSFSSYDVE
FT                 NYLLARFSSLNRAQRVLAYINRFKSNLLASRRGGQHVGGELDPVELHEANV
FT                 QLARCAQHAVFQRDIQCLQKGDQLALKSQIRSLFPFLDANGTLRVGGRLQN
FT                 SDQSFEMKHPIILPKFHRYTELLIINLHLENLHAGPTLVVATLSQKYWILG
FT                 CQTIVRNIINNCVRCLRWKAKTAKQLMGSLPTVRIVGRRAFENVGVDYAGP
FT                 IVLKASVLRTTKTIKGYIAVFVCLGTKAIHLEAVTALSSGAFISALKRFSS
FT                 RRGSPSQIWSDNGTNFVGADHQLKDLLQSVNFNSEINRYLSGLGVKWTFIT
FT                 PSAPHMGGIWESAVKSMKKHLRIVLGKQMITYEDMTTILTQIEACLNSRPL
FT                 CALSSSTDSCEALTPGHFVIGQPLPR"
XX
SQ   Sequence 5529 BP; 1550 A; 1242 C; 1366 G; 1371 T; 0 other;
     ttttggtcct tctgctccgg atagcagaga atccgcgacc ggtccgggac aatggaagcg        60
     cttttgaaga agcgaaatgt tgcgttcgaa cggctgaaac gggaacacgc aggtgcgaga       120
     caagtgacac aggaaacacc aaccttcgag ataaatgatc ggctgcaaaa gttggtggaa       180
     atgcaggaga atttcgacaa aatccagtgc gaaatcgaag acgcagcaac agaggaggaa       240
     ctgccgtcgg tgctgaatgt gcgagaggat tacgagaaac tgttctacat taccaaagga       300
     atgtttactc gtatgctgga ggtagagcgg ccgagaggat cctactgcgg aagtagcgac       360
     ggtacgtgca ttgaaccgga tagcggactg aaggaagctg ttcgtgtgct attggaaacg       420
     caaagggcgt tgttaacaag acaagctgca gcttcaacta ccgtggagga gttagctggc       480
     cagtttcgta atatgcgcga aaattcaatc gacacacaac taccatcatt caatcttccg       540
     acgttcaagg cgacaggaaa cagtgggcat cgttcaagga catctttgtc agcagtgtgg       600
     ataagaaaaa ccttacgaat gcgctcaaac tgcagcttct tatgtctcac ttggagggag       660
     aagcaaaaag cctcgttagt agttatgcaa ttaccgatgt gaactataaa gaggtatggg       720
     atactctggt cgaacagtat gacaagccga aatttgccgt ttcggcgctt gtccaggagt       780
     tttgtgacca gccagtaatc aagacagcga atctcgtgaa tctacggaag ctcgtatcga       840
     cctccgacga ggtgattcgt cagctgaaag ccatgggagc tgcgtacgag accagagacc       900
     cttggctcat ccatatcgtt gtgaaaaaac tggatgacaa tgtaagatcg caatgggcag       960
     cgcacatcgt ggatatcgac aaccctactt tcgaagaact gctcaaattc ctcaagcgaa      1020
     aatgtgacac cttcgaaacc tgtgcagctt ttagcggcaa gcaatcggat tacgtcaaga      1080
     aagacatctt caaagaagaa cggaaaaatc cagcagtaaa gagagaagtc agcaattttg      1140
     gcgtcactca gcagtcgtgt ccaatatgtt catcaggaga tcatgtaatt taccagtgca      1200
     ccactttcaa ggaggctaca gtgaaggaac gacgagacat ggcactgcaa atgcgacttt      1260
     gctacaactg tttgcgttca aaccactgcg caaaatcgtg tccgtcaaaa tctgtatgcc      1320
     gcacatctga ttgccagcaa cgacaccata ctctgctgtg tcagtatgac aaagcggaag      1380
     tcaacagcaa cgtctcaacg attgaagata aggtggttcc cgcgactaca accagcgaaa      1440
     ctgaagacaa cactgaactc gtttcttgtt cggcaaatgt gaaagcaact acttcggtct      1500
     tcatagctac gttgccaact gcagttgttc gtgtgagagg gaaagacaag cagtttcatg      1560
     aagtgcgagc catgattgac agcggttctc aatcgtccct aatctcagag cattgtgtca      1620
     ctgtccttgg tttggaaaaa gaaaatgcga agctgatagt gtcaggtgtt ggcagcggtg      1680
     caacggagac caccagaggg gtggtgaatt tggaaatctc ttctcgcttc gacgacaatc      1740
     tgatatgccg aacgaaggca ttcgtgctga gcaagcttgc aacgaatcta ccaagccgac      1800
     aaatcgatac tagccgtttg aaatgccttg agtcgttgcg actagccgat ccccatttcg      1860
     agaaaccaag aaagatttat gtgattctag gagtggatgt ttttttgtcc gtagttcaag      1920
     atggaaaagt gaaagatgac atggggctac agtggcattg aattccgcgt tcggttggat      1980
     tgttgctggt caagtcgggg ctacaactga tctaacatgt aacactgcta ttgtcactat      2040
     gtgcaccgaa ttcaacgttg ataaaacgct acgacagttt tgggaagtcg aggaggtgaa      2100
     caagccgaag ccgataacac cgcagcaaca aaagctgtcg aagtattcca agctacctat      2160
     caacgtgacg aatctggccg attcatcgta agtctcccat tcgatgaaac tactgcaccg      2220
     ctaggaaaag tcacttccag cagccattca tcgactcaag tcaatgcacc gaaaatttgc      2280
     aagcgatcct gttttcaaga agctgtactg tgattttatg gcagagtatt tgcagctggg      2340
     ccacatggaa cgaattcctg atgcagagat cgagatgcca tcggatcaac gatattattt      2400
     tccgcatcac gcagtccttc gaagcgaaag tttgacaacc aaactgcgag ttgttttcga      2460
     cggctcctgt gaaacagcaa ccggcgtgtc gttgaatgat cgtttgttag ttggaccaaa      2520
     agtcaccgaa gatgtcccgg tggttttcac ccgtttcagg acctacgtcg tcgcttttac      2580
     agctgatgtc gagaaaatgt atcgacaggt caaggtgcgc aaggaagata ccaattacca      2640
     acgcattatt tggtctcctg agcccggaaa acctttcgag cattataggc tactaaccgt      2700
     cacgtatggc agctcatgtg ctccgtactt ggcaattgaa tcactccgac aagcagcacg      2760
     agattgccaa tcgcagtacc cggaagcagc agagcatgtt tcgaagaact tttatgtgga      2820
     tgacctactc tccggtgcca acacgctcga agaagcaatc aagctaagaa atgacatcat      2880
     ccaggtaaca tcgacggccg ggttcaccct acggaagtgg tcatcaaacg accctcgctt      2940
     attcgatgaa agtactgaga ccgacgctgc agtcccactt catttggcgc cagatgctga      3000
     ctcggtgaag gcattgggaa tacagtggta tcctgccact gacactttcg gataccagtt      3060
     aaagatggat ttcaacaagc gaaatacgaa acgtcaaatg ttatcagact cagctcgact      3120
     atttgatcct ttgggctggg tcgctccgat catcgttcgt attaagatcc tttttcaatc      3180
     gctgtggttg caggatttgc tgtgggatga tccattaccg gcggcaatag atgacgagtg      3240
     gaacaaaatc aagaacgact tgcaagcaat cgagaagatt cgtattccaa gatggattcc      3300
     ccatcatgga ggcaaagtgc agctgtttgg atttgctgat gcttcagagg ctgcatacgc      3360
     ggcagtggta tacgctcggt caaccgacca aaacggtaag attttcgtct ctctggtagc      3420
     aagtaaaacg aaagtggcac caatccagca agtatctctt ccccgcttgg agctcaacgc      3480
     tgcggtactg cttactgacc tcatgaagca acttatgcag tctctatcgc atttggacgt      3540
     tacgtgctac gcgttgacgg attcggagat cgttctgggg tggctatcgt cgcatccaag      3600
     aaagtggaaa acgtacatcg ccaatcgcac atcaatgatt ttggaatttc tcccacgtag      3660
     ctcctggaac cacgtagcat cggctgataa cccggctgat tgcgcgtcaa gaggtttgta      3720
     tccagcagat ctggtgaact ttagcttgtg gtggaaaggt ccatcgtggt tgtatcagtc      3780
     cgacgaaaca tggaatcgtc atcccgcagt aatggttcca gatcctttgc tcacggatca      3840
     agagtgctca tcgcaatgtt tgatggttgc aagttctgga tcgttttctt cctacgacgt      3900
     ggagaactac ctgttagcac gtttttcgtc actcaatcgt gctcaaagag tgctggcgta      3960
     catcaacaga tttaaatcca atttgttagc gagccgacgt ggtggtcaac atgttggtgg      4020
     cgagttggat ccggtggaac tacatgaagc aaacgttcaa cttgctcgat gtgctcaaca      4080
     tgctgtgttt caacgagata tacagtgcct gcaaaaggga gatcaattag cgctgaaaag      4140
     tcagatcaga tctttgtttc cgtttctgga tgcgaatgga acgcttcgtg taggaggacg      4200
     actacaaaac tcagaccaat catttgagat gaaacatccc ataatcttgc ctaagtttca      4260
     tcgttacacg gagctcctaa tcatcaatct gcaccttgaa aacctacatg ccggaccgac      4320
     actggtagtg gctacactta gtcaaaaata ttggatcctt gggtgtcaaa caatcgtccg      4380
     caatatcatc aataactgcg tccgatgtct tcgatggaaa gcaaaaaccg caaagcagct      4440
     aatgggaagt ttgccgactg tgaggatcgt aggaaggcgt gccttcgaaa acgtaggtgt      4500
     cgactatgcc ggtcccattg ttttgaaggc tagtgttctg agaactacca agactatcaa      4560
     agggtatatt gcagtatttg tttgtcttgg cacaaaggct attcacttgg aagcagttac      4620
     ggccttgtcc tcaggtgctt tcatttctgc attgaagcga tttagcagtc gtcgtggatc      4680
     gcccagccaa atatggtcag acaatgggac gaatttcgtt ggtgctgacc atcaactgaa      4740
     agatcttctg cagtctgtca actttaattc cgaaattaat cgttatttga gtggtctcgg      4800
     agtaaagtgg accttcataa caccgtctgc tccccatatg ggcggaatat gggagagtgc      4860
     tgtgaagagt atgaaaaagc atcttcgaat cgtccttggc aagcaaatga taacctacga      4920
     agatatgacc actatattaa cacaaataga agcgtgcttg aactcacgcc cactctgtgc      4980
     tttgtcctca tctaccgatt catgcgaagc gctgactcct ggtcatttcg tcattggaca      5040
     accactgccc aggtaacatt ggtagctgaa taaaagttta ttcagctaag aaaaggctga      5100
     ataaacaaca tttgagatga ataagctgtt attcagctac caatgttact tgggtgaacc      5160
     ttattcctga acctggcgtg gcattgctcc cggagaaccg cctcgataaa tatcaacgta      5220
     taagaaaagt agttgaggat ctgtgggacc gtttcaagac tgagtacgtg tcgtcactgc      5280
     aatccaggaa taagtggcaa gcatctgtag aaaatgtgaa ggtaactgac ttggtgctgg      5340
     taaaaaacga ttgtactccg ccagcatatt gggaacttgc tcgcgttact gctgttcatc      5400
     cagatcgaag cggagtggtg cgtaacgtga ctctacagag aggccaaact acatatcaac      5460
     gacctattca caagttggtg gtgttgccga gtaattgagg catccgcctc aaggcggggt      5520
     gtttgttgc                                                              5529
//
ID   BEL-32_AA-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_AA_;
KW   BEL-32_AA-I; BEL-32_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-290
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  238053  237764.
XX
SQ   Sequence 290 BP; 91 A; 62 C; 49 G; 88 T; 0 other;
     tgattcttta tatgatccct tgaccttatt ggccaaaccc aaaaaactat gtgcaagaaa        60
     acaacgaatg aagagaaaat aatcaagaga atcgagcaga gagaaacacg tcgccttccg       120
     ctatgatcaa cctcatgtaa tttcataagt aaaaatatac gaaacgaaaa gcacgccatt       180
     tttccaaact tgctttattc cgagaattat tcagtttttc gctataattt cgtcggtttt       240
     cattcgtcgt tggcttcgtc cgcttttgcg tgttgctccg tcgattaaca                  290
//
ID   BEL-32_AnFu-I repbase;    DNA;    INV; 6022 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6022
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 681-681 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..5984
FT                 /product="BEL-32_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MNSCVACTRPDEVEDMVACDMCEEWQHYSCAGVDEKV
FT                 KHKPWMCAKCRSAAKDASGTTAKVVLKDHVERAGGSCAGEQVCAGDTRSTR
FT                 SSVKERPHDDYKRMIKDEKWPVRSGVVERLDDGDARTVRSNVVKEMRDRDT
FT                 RSVRSSVVEEMRDRDTRSVRSSVVVEKRDRDTRSVRSSALVEKQVRDTRSV
FT                 RSSAVEEGRYRDTRPVHNSVVEEWRDRDATSRPRRDNAEERRRADDTSSTR
FT                 SGVKEQWEEDEKKSVGSGAMRRRREYETRSICRSAKERESDDDEEEELQEQ
FT                 LLSNEIALLRLQLSKRLRAEKESQERKLNEQRTNKKIVRVSGNESVTSMTT
FT                 EDKVEDWLRTAEEKGHSSVRKVCEEGPSKKQIAARHIIGKDLPYFSGDPKQ
FT                 WAMWFSNYERTTVTCGLSADENLIRLQRCLKGPALELVQGRLLLPENVPSA
FT                 IELLRKRYGQPITLLKALIEKVRSTPPPKVENMESIVKFGSVVDELVQHIV
FT                 VAKMDKHLNNPTLLDELVLKLPPAYQLQWIEYGKRREEEDISVFSQFTNGL
FT                 MDSALELVAKHSKPERLSNNRGHVNFHNSAVQQKYVKKCAICTGGGHGVAT
FT                 CATFKKLSVQERLKQVDKFGLCKICLNIHGKQPCKKTDRCEIADCRLHHHT
FT                 LLHLVDPTTTLSKTLLPAKENQGFCASHSRVGSTSVSLFRIIPVTLQNEDQ
FT                 VVTVFAFLDEGSDLTLLDEDVAKQLNVSGQQAELNMTWTGHVSRTEKQSLR
FT                 IDKLAIYGPLNKKYYVKDVRTVKQLQLPEQSLCYSDLVSKFSHLSGLPITD
FT                 YKQVTPKMLIGMDNLNLIVPVKVREGAWKDPIAVKCKLGWGIYGRSQSNMG
FT                 TGMVGYHKDNSSEETITTLVRKYIVQDNMNINDSTKLMESEEDKKARITLQ
FT                 NTTRRVGKGFETGLLWRYDNPTFPPSYEMALKRFRALERRLSKNANLYTRV
FT                 RSLLREYEEKGYTHRATVDELQGTQIGKCWYLPLGVVINPKKPTKVRLIWD
FT                 AAATVQGISLNSALLKGPDLLKSLIAVLYNFRKYAYALTGDIREMFHRVQI
FT                 RPADRQFQRFLWRENNTCDIQVYIMDVAIFGAACSPTSAQYIKNLNATEVG
FT                 KTSERAVRAILNYHYVDDYLDSFPTIEEAIEVGKEVKRIHAEGAFEIRNFL
FT                 SNHPIIVEGVSNQPVQTEKTIYVDKQLESVLGMKWKLEDDILTFIFKMSPE
FT                 LEAMLEETHIPTKREVLRIIMSLFDPLGLLSFFIIQGRILLQDIWISGTDW
FT                 DIPINKDLHEHWKRWVDMLPRLPDVKIPRCYFQGGNYATYNETEVHIFVDA
FT                 SKSAYAAAAYFRVRNHDELAVTLVAAKAKVAPLKLMSIPRLELQGAVLGVR
FT                 LLNNVIENHQLPVTRRVLWTDSEIVLAWLRADHRKYQQFVGFRVAEILGST
FT                 DICEWRKVDTCLNVADLATKWGKGPCFDENSPWFQGPSFLTREEEYWPTQK
FT                 EVAYTTSNELRAVHVHTIQSPIIETERFSSWDRLLRTIAYIHFFVAIVRKE
FT                 DKELPFGQLKQEHYAKAENTLCLWAQQEYYAQEIKQLRNLQSISKSSSLYK
FT                 LAPFLDEKGIMRMKGRIEASDHIAYETKHPIILPQRSRITLLLANKFHRRF
FT                 RHGNRETIVNEIRQQYHIPKLRVLIARVNRECMMCRIRHAKSRTPPMAPLP
FT                 VQRVTPFVRPFTYVGVDYFGPLYVKVGRSNAKRWIALFTCLSIRAIHMEVV
FT                 HSLSTESCVMAVRRFVARRGAPAEIFSDNGTNFQGANKQLNQEKQQRYREL
FT                 SSTFTNANTRWIFNPPGAPHMGGVWERMVRSVKVAIGEIIESHRKPNDEAL
FT                 ETIILEAESMINSRPLTYIPLESADQEALTPNHFLLGSSSGVKQPEVHPTD
FT                 YRATLRSSWKLAQYLLDSFWRRWTKEYLPILSRQSKWFETVKPLETGDLVF
FT                 IIDGTTRNAWRRGKIERVVKGRDGRVRQAWVNTNSGLIRRPAIKLALIDIR
FT                 VS"
XX
SQ   Sequence 6022 BP; 1952 A; 1093 C; 1597 G; 1380 T; 0 other;
     attctaacaa aattgtggtt cattttttcc caaaagtgaa ttaaacggta aaaatgaata        60
     gttgtgtggc ttgtacccgt ccggacgaag tggaggacat ggtggcatgt gacatgtgcg       120
     aagagtggca gcattatagt tgtgcaggag tggatgaaaa agtcaagcac aaaccgtgga       180
     tgtgtgctaa gtgtagatcg gcagcgaagg acgcatctgg aactaccgcg aaagtggtgc       240
     tgaaagatca cgtggaacgg gcaggaggaa gctgtgctgg agagcaggtc tgtgcgggag       300
     acacgcggtc aactaggagc agtgtgaaag agcgacctca tgacgactac aagcgtatga       360
     taaaagatga gaagtggccg gtaaggagtg gtgtggtgga acgcctggat gacggagatg       420
     cacggacggt gcgtagcaac gtggtgaagg agatgcgtga tcgagacacg cggtcagtgc       480
     gtagcagcgt ggtggaggag atgcgtgatc gagacacgcg gtcagtgcgt agtagtgtgg       540
     tggtcgagaa gcgggatcga gacacgcggt cagtgcgtag tagtgcgctg gtagagaagc       600
     aggttcgaga cacgcggtcg gtgcgcagca gtgcggtgga ggaagggcgt tatcgagaca       660
     cgcggccggt gcataacagt gtggtggagg aatggcgtga tcgggacgcg acatcgaggc       720
     ctaggagaga taatgcggaa gagcggagac gtgccgatga tacgtcatcg acaagaagcg       780
     gtgtaaagga gcaatgggag gaggacgaga agaagtcggt tggaagcggg gctatgcgac       840
     gaaggcgtga gtatgaaacg cggtcgatat gtagaagtgc gaaagaacgg gagagcgatg       900
     acgatgaaga agaggagtta caagaacaat tactgagtaa cgagattgcg ttgctgcgat       960
     tgcaacttag caaaagatta cgcgctgaga aggagtcaca ggagcgaaag cttaacgaac      1020
     agcgaacaaa taaaaaaata gtgcgtgttt cgggcaacga aagtgtcaca tcaatgacga      1080
     ctgaggataa agtagaagat tggttgcgta ctgcggagga aaaaggtcat tcgtcagtga      1140
     ggaaagtttg tgaagaagga cctagtaaga aacaaatagc ggcgcgtcat atcataggaa      1200
     aagatctgcc gtatttttca ggcgacccga aacagtgggc tatgtggttt agtaactacg      1260
     aacgaacaac ggtaacgtgt ggattgtcag cggatgaaaa tctcatcagg cttcagaggt      1320
     gtttaaaagg accggctcta gagttggttc agggaagatt gttgttgccg gaaaacgttc      1380
     caagtgctat cgagttgcta cgaaaaagat atggacaacc aataacattg ttgaaagcat      1440
     tgattgaaaa ggtgagatca acaccaccac cgaaagtgga aaatatggaa agtattgtaa      1500
     aatttggcag cgtagtagat gagttagtgc aacatatcgt ggtagcgaaa atggacaaac      1560
     atctgaataa tcccacactg ttggacgagt tagtgctgaa gctacctcca gcctatcagc      1620
     ttcagtggat agaatacgga aagaggaggg aggaagaaga tatttcagtc tttagtcaat      1680
     ttaccaacgg attgatggac tcggcgttgg aactggtggc taagcactca aaaccggaaa      1740
     gattatcgaa caatagagga cacgtaaatt ttcacaatag tgcggtgcaa caaaaatatg      1800
     tgaaaaagtg tgcgatatgt acaggtgggg gtcacggagt ggcaacatgt gccacattca      1860
     agaagttatc ggtgcaagaa cgcttaaagc aagttgataa attcgggctg tgtaaaattt      1920
     gtctcaatat acacggaaaa cagccgtgca aaaaaaccga caggtgtgaa atagcagatt      1980
     gtcgccttca tcatcacaca ttactgcatt tagtggatcc aacaaccaca ttatctaaga      2040
     cattattgcc tgcgaaggaa aatcaagggt tttgtgcgtc tcattcgagg gttggatcga      2100
     caagcgtatc actcttcaga ataattccag taactttgca aaatgaggat caagtggtta      2160
     ctgtgtttgc ttttttggat gagggttcag atttgacatt acttgacgaa gacgtggcca      2220
     aacagttgaa tgttagtgga caacaggcag agttgaatat gacgtggacc ggacacgtgt      2280
     cgagaactga aaaacaatcg ttgcgtattg acaaactggc aatatacgga ccactaaaca      2340
     aaaagtatta tgtgaaagat gtgagaacgg ttaagcagtt acagcttcca gagcagtctt      2400
     tatgttactc tgatttggtt agcaagtttt ctcatttaag tggattacct attacagact      2460
     ataagcaagt gacaccgaag atgttaatag gtatggacaa ccttaacttg attgtgccgg      2520
     taaaggtcag agaaggtgcg tggaaggatc cgatcgccgt aaagtgcaag ttgggttggg      2580
     gcatctatgg tcgatcgcaa agtaatatgg gaacaggaat ggtggggtac cataaagaca      2640
     atagctcaga agaaacgata actacactcg tgaggaaata tatcgtgcaa gacaatatga      2700
     acatcaatga ttcgacaaag ctaatggaat ctgaagaaga taaaaaagcg cggatcactt      2760
     tacaaaatac aactcgaaga gtaggaaaag gtttcgaaac aggattgcta tggaggtacg      2820
     ataatccgac gttcccgcca agttacgaaa tggcgctaaa acggtttcgt gcattagaaa      2880
     gaagattaag taaaaacgca aacttataca cgagagttcg ttctttacta agagaatacg      2940
     aagaaaaggg ttacacacat cgtgctacag tcgacgaact acagggtaca caaataggaa      3000
     agtgttggta tttaccctta ggagtagtaa tcaatccgaa gaaaccaact aaagtccgac      3060
     tgatttggga tgctgctgcc acggtgcaag gaatatcgct aaattctgca ctcctgaaag      3120
     gccctgatct tttgaaatcg ttgattgcag tgttgtacaa ttttcgcaag tacgcatacg      3180
     cattaaccgg tgacatcaga gagatgttcc atcgtgttca aataagaccg gctgatcggc      3240
     agtttcagcg gtttttgtgg cgagaaaata atacttgtga catacaagta tatattatgg      3300
     acgtggcaat ctttggagca gcatgttctc caacatcagc acaatacata aaaaacctca      3360
     acgcaacgga agtgggaaag acgtctgagc gggcagtaag agctattttg aattatcact      3420
     atgtggatga ttatttggat agctttccaa cgatcgaaga agcgattgaa gtgggaaaag      3480
     aagtcaaaag gatccatgct gaaggagcgt ttgaaataag aaattttctt tccaaccatc      3540
     cgatcatcgt agaaggcgtc agcaatcaac ctgtacaaac ggaaaaaacg atctatgtag      3600
     acaaacaact agaatcagtt cttggcatga agtggaaatt agaagacgac atattgacgt      3660
     ttattttcaa aatgtcgccg gaattagagg ctatgctgga ggagacacat ataccaacaa      3720
     aaagagaggt tctacggata attatgagtt tattcgaccc cctaggactt ttatccttct      3780
     tcatcataca agggcgaata ttgctgcaag acatttggat atccggaacc gactgggaca      3840
     taccaattaa caaagatcta catgaacatt ggaaacgctg ggtcgatatg ttgccgaggt      3900
     taccagacgt aaagatacca cggtgctatt tccaaggagg taattatgca acatataacg      3960
     aaacagaagt ccatatcttt gtagacgcca gtaagtcagc atatgcggca gcagcatatt      4020
     tccgggtgag aaaccatgac gaattagcgg tgacactcgt agcagcgaaa gcaaaagttg      4080
     ctcctctaaa gctgatgtcc ataccgaggt tagaactgca aggtgcggtt ctgggcgttc      4140
     gattactcaa caatgtaata gagaaccatc aactgccggt tacacgacga gtattatgga      4200
     cagattcgga aatagttctt gcgtggttga gagccgatca tcgaaagtac cagcaattcg      4260
     tggggtttcg agtagccgaa attttgggtt caacagacat atgcgaatgg cgaaaagtag      4320
     atacgtgttt aaacgtcgcg gatttagcaa ctaagtgggg gaaagggcca tgttttgacg      4380
     agaacagtcc gtggtttcaa ggtccatcat tcctaacgcg tgaagaagag tactggccaa      4440
     ctcaaaaaga agttgcctat acgacgtcaa atgagctcag agcagtacat gtacacacta      4500
     tacagagtcc aataattgaa acggagaggt tttctagctg ggataggctg ttaagaacca      4560
     tagcctacat tcattttttc gtggcgattg taaggaaaga agacaaagaa ttgccctttg      4620
     gacaattaaa gcaagaacat tatgccaagg cggaaaacac actctgtcta tgggcccagc      4680
     aggaatatta cgcacaggaa atcaaacaac tccgcaactt acaaagtatt tcaaagtcga      4740
     gcagtctata taaactggct ccatttttag acgaaaaggg cattatgaga atgaaaggta      4800
     gaatagaagc gtcagatcac atagcatatg aaacgaaaca cccgataata ctgccgcaaa      4860
     gatcaagaat caccttacta ttggccaaca aattccatcg acgattcaga cacggtaata      4920
     gggagacaat agtgaatgaa atacgccagc aatatcatat ccctaaactg cgagttttga      4980
     tagcacgagt aaatcgcgaa tgtatgatgt gtcgtattag acatgctaaa tcacgtaccc      5040
     caccgatggc tccactaccc gtacaaagag ttacgccgtt cgtcagacct tttacgtatg      5100
     taggagtaga ttattttggt ccactgtacg ttaaagtagg tcgtagcaat gcaaaacgct      5160
     ggatcgcttt atttacctgt ctcagcataa gggccataca tatggaagtt gttcacagtt      5220
     tatctacgga gtcttgcgtg atggcggtgc gaagattcgt ggctcgtcga ggggctccag      5280
     cagagatatt cagtgacaat ggaacaaact ttcaaggtgc taacaagcag ttgaatcagg      5340
     agaaacaaca acgttaccga gaactttcat cgacttttac caacgcaaac acgcgttgga      5400
     tctttaatcc accgggagcg ccccacatgg gcggtgtttg ggaaaggatg gtgagatccg      5460
     ttaaagttgc gatcggtgaa attatagagt cccatagaaa gccaaacgac gaagcgttag      5520
     aaaccatcat attagaggca gaatcaatga taaacagcag accattgacc tatattccac      5580
     tagaatccgc ggatcaggaa gcattgaccc caaatcactt tttgttggga agttctagcg      5640
     gggttaaaca gccggaagta catccaacag attacagggc caccctcaga agtagttgga      5700
     aattggctca atatttatta gacagctttt ggcgcagatg gacgaaagag tatttaccca      5760
     ttttatcgcg acagtcgaaa tggttcgaaa cggtgaaacc cttagaaacc ggggatttag      5820
     tatttattat tgatggcact acgagaaacg cgtggagaag aggcaaaata gaaagagtcg      5880
     tgaaagggcg agatggacgc gtaagacaag catgggtgaa tacaaacagt gggttaataa      5940
     gaaggccagc gatcaaatta gcactgatcg acataagggt cagttaagga tggtgaacgc      6000
     aagcggttca cgggcggggg ga                                               6022
//
ID   BEL-32_AnFu-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-279
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 735-735 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 279 BP; 91 A; 59 C; 68 G; 61 T; 0 other;
     tgttgcgaca gaattgtcgc ctgggtgcgt agcccagtca tgtaacgcct gcgttaatgt        60
     aaacgcatga acaataaacg caaagctaga atccggaaaa gaccgcgtgt agaaagggaa       120
     gtgatgagga cctcgcgtga ggacgaaatg atcagtagac tgacaacgag cacactaggt       180
     cgatcacaat tttgttagct cagcctactg tgctaaataa aaagtgaaaa cccaattaaa       240
     aacgtgtgca tttagtgttg ccctcttccg aaagtcaca                              279
//
ID   BEL-32_CQ-I repbase;    DNA;    INV; 1601 BP.
XX
AC   AAWU01004057;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_CQ_;
KW   BEL-32_CQ-LTR; BEL-32_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1601
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 217-217 (2011).
XX
DR   GenBank; AAWU01004057; Positions    9463    7863.
XX
CC   'TAAGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..1599
FT                 /product="BEL-32_CQ-I_1p"
FT                 /translation="MVIAESVTMEKLEHLRTVHLLRVNGVLAAAGKLAERK
FT                 ASHSEATERLDQLHGLAGDFRWTQQRIEEILDDPEAIATARFKAEEFKAAY
FT                 QGAKELLEKHISSTKPVRAVPRNGSTGSLLEEIRKFSIEVKEWNATCVGQF
FT                 GAVREGNDDSNGSNSVSNRAPSSGPSTTTNKNGAKKINGQSGAVGCGDADG
FT                 KQLPSCAPVLGPTAAPVMDSALEDYNIEPTGGIQISNWLPQSEKLLPPIEV
FT                 STFHPGWTSWNRSKDGPETFSEDVEKASVSDNNAKMEARDSRGAQRKAHIL
FT                 PTEAVSVRGNDAALLQASLGSKVRARLGLPHSSEKVVATGQQLQATSAHHV
FT                 SQRENGRLIKREQEHCGSARQRPEQQDLARSIDVFRASGQWKQVKINGGVP
FT                 SAHTVSSASNVPRNQSINSMEEQANLDKITFTQNRTGSHVGRTSRKLTLSR
FT                 ALLENTDRKSTLQQGTTTRITWSNHSRFDDQRIIVRLLLYDSVPAPESGNV
FT                 TTGTTQRGQARCHGRETPRKGLRLRCLKAGE"
XX
SQ   Sequence 1601 BP; 437 A; 415 C; 480 G; 269 T; 0 other;
     ttggtccttc gtcgtcggat ggttatcgcg gaatcggtta ccatggagaa actggagcac        60
     cttcgaacgg tgcatttact gcgtgtgaac ggggtgttgg cggcagccgg gaaactcgcc       120
     gagcggaagg cttcccacag cgaggcaaca gaaaggctcg accaactcca cggacttgct       180
     ggagacttcc ggtggacaca gcagcggata gaggagattc tggacgatcc ggaagcaatc       240
     gccacagcgc ggttcaaagc ggaagaattc aaggcggctt accaaggagc caaggaactg       300
     ctcgaaaaac acatttcgag caccaaaccg gttcgagcag ttccacggaa cggtagcacc       360
     ggaagcctgc tggaggaaat ccggaagttc agcatcgagg tgaaggaatg gaacgcaacg       420
     tgcgtcggcc agttcggagc cgttcgtgaa ggcaacgatg attcgaatgg cagcaattcg       480
     gtgtcgaatc gtgcaccctc ctcgggtcct tcgacaacaa caaacaaaaa tggtgcgaag       540
     aagatcaacg gccagtctgg agcagtggga tgcggcgatg cagatggcaa acagctgcca       600
     agttgcgcgc ccgttttggg tccaacggcg gcaccggtga tggattctgc gctggaagat       660
     tacaacatcg aaccaacggg aggaatccag atatcgaact ggttacccca atcggagaag       720
     cttcttcccc caatcgaggt gtcgacattc caccctggtt ggacgagctg gaatcggagc       780
     aaggatggtc cggagacgtt ctcagaggac gtagagaagg catccgtcag cgacaacaac       840
     gcgaagatgg aggcacgaga ttcaagagga gcacagcgga aggcccacat tctgccaact       900
     gaagctgtca gtgttcgggg aaacgacgcg gctcttctcc aagcatcgct gggttccaag       960
     gtccgtgcca gactcggtct gccgcattcg agcgagaagg ttgtggccac cgggcagcaa      1020
     ctgcaagcaa caagcgctca ccatgtgagc cagagggaaa acgggcgcct gatcaagcgg      1080
     gaacaggagc actgtggttc agcgcggcaa cggccggaac agcaggacct cgcacggtct      1140
     attgatgtct ttcgtgcctc aggtcagtgg aaacaagtca agatcaacgg tggtgttccg      1200
     tcagcacata cagtgtcatc cgcatcaaac gtgccaagga atcaatccat caactcaatg      1260
     gaagaacaag caaacttgga caagatcact tttacgcaga acagaacagg aagtcacgtc      1320
     ggacggacgt cgaggaagct gactctcagc cgagcgctgc tggagaacac agatcggaaa      1380
     tctacattac aacaaggaac aactactcgg atcacctggt cgaatcattc tcggttcgac      1440
     gatcaacgca tcatcgtacg actgctgctc tacgattcgg tgccagcccc agaaagcgga      1500
     aacgtcacga caggaacaac gcagcgcggt caagcgagat gccacggtcg agaaacgccg      1560
     aggaaaggat tgaggctcag gtgcctcaag gcgggggaga a                          1601
//
ID   BEL-32_CQ-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   AAWU01004057;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_CQ_;
KW   BEL-32_CQ-I; BEL-32_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-215
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 218-218 (2011).
XX
DR   GenBank; AAWU01004057; Positions    7862    7648.
XX
SQ   Sequence 215 BP; 53 A; 62 C; 45 G; 55 T; 0 other;
     tgttccggtg gctccccacc ggtgaattgg caaccctgca caactgtcag attttgattg        60
     gctgacaaga tcaacaagaa ggaaaacacg ctgtcattct tctttcacca ctcgatgcga       120
     tcagaagcaa atacacgttt agtttagtac gcggtcgtct ttaattctcc tccggtctcg       180
     agtcccgtcg gcccagtcca aggtccactc aaaca                                  215
//
ID   BEL-32_DTa-I repbase;    DNA;    INV; 5890 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5890
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5645-5645 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 5890 BP; 1735 A; 1483 C; 1218 G; 1454 T; 0 other;
     ttttggcgac cgtgacagga cgcagtacag aataagcgga ggttcagaat tggtcttaga        60
     tttggaaaag cgtccagcgc atcgcaccaa ccacgggcga cgacagcggc agtcaacatc       120
     gaacgagtca gcttaccgga attgacggag agacatcagc agcattgtcc gcctgtctgg       180
     agacaggtca accatattct ggatcatcgc cagcgttgag gagcacgaag cacggaatct       240
     ttctggacca ccattgcgcc aagattgcat aacttcttcc ctctcccagt cagcgatttg       300
     cagccacgtg cagtggtcaa cttgtgcaca aacacggacg aaaaattccg ttaccgcaca       360
     cacatacata cacacgtgaa agcgtgccgt gagtacacac atacaaacat tgtcatctat       420
     ctctgttccc atattcgcat accgccaaaa ataaatacat acatacgctt tacagctgct       480
     taagtacctt ggctgaattt gtgtctacgt atttgccaat tttctaacgc cgagctgcac       540
     tttaggtaca gattagggta aactaattcc cggtagcaga acggttcttt ttcgagctgt       600
     agaccattcc ctttatatag tcgttccaaa atttatagtc aagctcaacg ccatgagtcc       660
     aaacaacaaa ggcgacgcga ccaacaacga gaagctacct tcactgcggc aacaacgatc       720
     aaaggtcgag gacaatatca aacgtttagc tgaccgcgta gaatccaact caaatgaaac       780
     ggcggaatcc ctagactgca atgtgcagat tctagaggca tattttcggc agttatccca       840
     gctgcaaact agaatcgaag aattagacat tgacgacgac ggacgcgcag tgggtgaaat       900
     cttatttgtt gagacaaaaa gcaaattaaa attcctcatc aacaaacaac ggcgcacgag       960
     ccttcacgag tctacctttc tcaatacaac agcaagcgca catcaatccc ggttgccaag      1020
     tttaaagttg ccaaacttcg acggaaccta cagcaactac aaacgattcg agggagcgtt      1080
     cattaatctt gtacatagtg atcccataat tcctcaaatc gacaaattca attatttgct      1140
     aaactgtttg tcaggaccag cacttgaagt agtcagtgcg tatcaagtga ctgaagataa      1200
     ctactccaag gcattcgatc gactcaagga gcgttatgat aatagcgtac ttatcttttt      1260
     agattccatc acgaacctat tcaaccttcc agcgatcgtc aagccagatg cggcaggact      1320
     tcagcggcta attgatacat cgtcagctat ccgaggatct ctcctttctt tgggcagcgc      1380
     ggatgatatt atgaacgcga taatgatcaa cttggttctg gcaaaagtgg acgcagatac      1440
     tcgtctcagc tacgatgaaa aacaatcttt cgacgagcta cccaattggg acgacttttg      1500
     taaaacactt acacaccgat gccagttcct agaaggtcgt caccggagcg caatcaagaa      1560
     ccgccaaagt gattggtgtc agaagccgaa gtcattacca agttcattgc cgaaggcatt      1620
     tgttactaca caggctagtt gcgtttactg tgagtcagcc actcactata tatctcattg      1680
     caaggccttt gctaaattaa acttagctca acggaaggat ttcgcaaaaa atacacccct      1740
     ctgcttcaac tgcttacgga aatctcacac tgcaaccgaa tgctcatcta attcgaggtg      1800
     cagagtctgc caaacagcgc atcacactct cctgcatgaa ttctcacgaa atcaagggca      1860
     ggtagcatcc atcgagggtc ggtcaacagt tttacatcag agtcaagcaa cagcaccgca      1920
     ggcaccacag atttctcttc tagcacgtac cgcaaagaga agtctcatac caacagcggt      1980
     agtccatatc aaggacggaa acggccagtt tcagatagtc agagcgttat tagattcagg      2040
     ttcggaactt aacttgatca cggaggagac tgcgaagcgt ctgcagttat caaaatgccg      2100
     cgtcagccaa gcgatcagtg gtatttctga cacctcaagg caaatcaatt acagcgtaca      2160
     tacaactcta aaatcacgag tttcggactt tcaatggaca tccaatttcg cggtgatcgc      2220
     atccatttgt gctcaacaac ctagtaaggg cgttgacata actgaatgga atatgccaga      2280
     aggaatcgta ctagctgatc caacattctt tcaacccagc aaaatcgaca ttttgatcgg      2340
     aattgaagga ttcttcgaag ccatccgagt tggaaaatgc acaatgggta cgaaaatgcc      2400
     cacgctcatc aatacaagtt tcggatgggt agttggtgga agtacgatgt tgcctactga      2460
     gcctgagcgc tacaaatgca atttcgttca aaatcaacca tctctagatg aaatcctttc      2520
     acacttttgg aaagtggaag agtatcaaac gccacgacaa actcttaccg aagaagaaca      2580
     gctctgtgaa cagcattacg agaacacagt tgctgttgga tccaacagtc gcattaccgt      2640
     tcgacttcca tttaaggaat caccccaaac gttaggccaa tcatacgaca gcgccgccaa      2700
     acgtttttcc ctactcgaac gtaggctaaa taacaatcag tccttaaagg aatcatatgt      2760
     tcaattcatg cgcgaataca tcacaacagg tcacatgtca ctcatacacg acgttgacaa      2820
     aagtgagccc catttcttta ttccccacca ttgcgtgtta cggccccaga gcctatccac      2880
     taagctacga gtagtgtttg atgccagcgc aaaatcttct tccggcgtag cattaaacga      2940
     aattctaatg gtaggaccca caatacaaca agatttaatc acgacattgc tttcatttcg      3000
     gctcaatcgt tacgctttat caggtgacat ctcaaagatg tatcgccaat ttgtaattga      3060
     cgagcgagat agaaaatttc agctaattct ctggagagaa aacgatacag acattctaca      3120
     gacctaccaa ctaaatacgg tgacctacgg tgtctcagca gctcccttcc ttgccattcg      3180
     gagtctgttt cacatagcca agttaaacga attagaatat cctctcgccg ctgcagtact      3240
     ccgaactgat ctatatgtcg atgatcttct tacaggcgca gacgatatag acactgcact      3300
     acagaagaaa acggaagtct caaaaatgct aagtcaggct ggattgacga tgaccaaatt      3360
     caacagtaat tcacccacac taggtaattc atcagacggc gaaatttcaa tgcagctgga      3420
     ggaattgaaa tcaacgaaaa tgcttggact agcatggcag ccatcagacg acgtattcat      3480
     tttccagttc aaattcgagt tttcttcgac ttctactaga cggactatcc tatcagaagt      3540
     atcacgaata ttcgattcgc ttggacttat cgcgcccgtc ctcatgaatt gcaaaacgtt      3600
     cattcaagat ttagttatcc gcaaactttc ttgggatgag ccaattccca acgatctcgg      3660
     aatcgtctgg gacaacttga aaaatgactt gcgaaactta tccacagtga aaattccacg      3720
     atatgtatca acctcacaac aataccaaag cgagcttcac ggatttgcgg acgcctgcaa      3780
     acgaggatac ggctgctgcc tttacattcg cagcataatc aatggtgtag taaaggtcag      3840
     cttattagtt gcaaagtcaa gagtcgctcc aattcaatcc ttgtcaatcc caaagcttga      3900
     gctctctgca gccgtgctgc ttaatagaac atatcaaaag ttcaaacaca aactcgagcc      3960
     ttacatctca aaggtatact tttggaccga tgcgaagacc gttctacagt ggcttgggaa      4020
     acactcgtcg caattgccaa cttttgaatc tcacaggata tctgagcttc agtcgtacac      4080
     acaagatgtt gaatggcgct acgtatcaac aagcaaaaat cctgcggaca tcgtatccag      4140
     aggatgctca gtaaaggatc ttgagcacaa catgtggttt actggacccg acttcctgaa      4200
     aaggtcggaa agcgaatggc cttgtctgcc taatccagta aatccacccc tccagtcatc      4260
     aatcgagatg caacccaaat ctatgatagt cgaaacttcg agtgctattg tagtacccag      4320
     cattctagat gatcttatcg agcggtcatc gtcatacttt cgtatcctgc gtacgctatc      4380
     cttcattttt agagtattta atagggtccc tgcagctaga cattcaactg ttcaaaatgt      4440
     agtacacgtg ccagcgatcg agctaaatca aacgttttgg agaatcgtag cacaaattca      4500
     gcaaacggta tatagcacag agatcaattt attactgaat gacaagccat taaagtctag      4560
     ctttcaagga ctgactccgt atttagacaa aatgcatatc ggcaatgcaa tcctgatcct      4620
     ggtgagagta gggggaagac tggataattc cgatctgcca tacagcgcta agcatccagc      4680
     cattttgcca aaacagcatc gctttacacg gctatacgtc gagttccttc accgttccaa      4740
     cctacatgca ggaccgaaag tcttgctttc cttacttcgc gaaaacgttt gggtcatcaa      4800
     cggcagagcg ttagtgcgtc aagtggtacg ggaatgcact cactgcttcc actacaagcc      4860
     tcgccttatg tcccagatca tgggaaatct ccctccagat cgacttgtcg gcgaacgagc      4920
     gttcctggtg tcaggcgtcg atttttgcgg tcccttcctg acctcataca aaattcgaag      4980
     caagtccccg tacaaaactt acgcttcaat atttgtgtgc tttgcaacga aggctaccca      5040
     catcgaacta gtttccgagc ttacaactaa tgctttctta tcctgcattc gaaggtttat      5100
     tgcccggcgt gggttaccgc aacgcatcta ctgcgataac gcaaaaaact tcgtgggagc      5160
     tgccaacaaa atgaaggagt tccaaactgc attactggag cctgaatcca tcagtcttct      5220
     agagtcatac agcgctcgca agggattctc attctgtttc atccctccca gagccccaca      5280
     tttcggcggc ctctgggagg cggctgtcaa atcagctaaa acgctcctga tgaaaaacat      5340
     cgcagaagca aactttacat acgaagagct cctgaccgtc ctcgcagaag tcgaagccat      5400
     attgaattca cgccccattg cgccagtatc ggacgaccca aatgatggag ctgcattgtc      5460
     gccggcccat ttcctaattg ggtcagcttt attgtctgca ccagatgaat ctctctataa      5520
     cccaacagag gaggacgacg actccaagtt gcgctatcta accagatggc aacgcgtgac      5580
     attcatcaat caacactttt ggcgcaggtg gcgaagggac tacatccatt ctcttcaagt      5640
     tcgcggcaag tggaccaagc cgcaagccaa catccaggtc ggtcaactcg tcatcgtgca      5700
     cgaggacaac cttcctcctc gatgctggaa cctagcaaga gtcactggag ttacttacgg      5760
     acgagaccac cgagtacgag tcgtggatct gcataccgct aaaggccccc tgcgtagggc      5820
     aattcataaa ttagctcctc ttccttttga ttgtaattga aagatctgcg ttctttcaac      5880
     gaggggagta                                                             5890
//
ID   BEL-32_DTa-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-273
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5659-5659 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 273 BP; 81 A; 68 C; 51 G; 73 T; 0 other;
     tgtcggagga gcatttgaat ataacgtaaa cttagttaaa tcaatgtaac tgtatggcaa        60
     ctctgtaagc tagggctaac gcgttgcaac tcccacctag tgttgcataa cgtggcttct       120
     aagctcaaag tccactactg aaatactctc gacgacgacg cacatcacgc gccgcttttt       180
     ctccaaataa atttataact acattctaaa gccgacttct tattcttgta ctgcgcccgg       240
     tgaacataaa acaagttcgg ccgcgatcga aca                                    273
//
ID   BEL-32_SiCu-I repbase;    DNA;    INV; 5520 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5520
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5006-5006 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..5195
FT                 /product="BEL-32_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQFKIRGSSFRKIELIVPVVNQHSKTPLTINSAKLY
FT                 LQRVRESWEILDNAHSQLIEQASNEAAVETQELVRDKMFSVYNDVEIKLIE
FT                 IIDTLTPAGSAAPTGVLPDVKLPPITLPTFNGGHENWLSFKDLFTASVDKR
FT                 ADLAPSQKLHYLKSSLQGDAATILKSISITDSNYIEAWKLLKARFDNEREI
FT                 VHTLVNKLLDQRKIVTECATDIRALVDNTNESLSALKVLKRPTDHWDDLLV
FT                 VITVNKLDDRTKREWAIRQTGTNLPTFQDLLTFLEGHIRGLQASGATTNAT
FT                 SKDKRRDTQKSIRVHHAATSSISCGICSGRHFTFQCPDLLKLPPRERGSKV
FT                 GQARLCYNCLWKDHSTKSCQSTKSCKKCGKRHHTLLHYDAAGTPQTATTPA
FT                 VQQTNSMAQHSSSQISSHHVDAELQSALLMTAIVNIRDCNGVLQPCRAFID
FT                 PGSTAQFISENCVTRLNLKRQASNVTVTGFGGTPVGGSNGQVTASVHSRFQ
FT                 PTTSVQVNFHIMPKLTHSMPTSSCKMRWWHLQGLPLADPSWYKPGPIDVLI
FT                 GIKHYHDVMLKETRRGPPGSPTASNSIFGWILSGECPSSEQVLHSFHVSVV
FT                 NELHLLQKFWEIEEPPKARILTKEEKECEKHFCDTHTRDATGRFVVQIPFN
FT                 DKKSQLGYSRQAAVRRLQSVERRLSRLPELRQQYVEFMREYVQLGHMEPIP
FT                 APEIMEVPGSTYYLPHHFVTNESSSTTKLRVVFDGSCKTTSGFSLNDTMLV
FT                 GATLQDDLYDNLLRIRQNPVVLKADIAKMFRQFQLIPEHADFHRIVWRDSP
FT                 EEPVRDFRLKTVTYGTASATYLSTRCLQQLATDVADKYPRASKVLQSAMYV
FT                 DDLMHSTTTTDEALKLFQELTNAAKEGGMELRKWSSNDASVLQQIPESLRE
FT                 TNAQSFDEDNAVKALGVQWLPCSDVFTFSEIDFDDSRTVTMRVLLADVARV
FT                 FDPLGFISCITIRGKLFLQELWKLNLGWDDPVPDFILSQWQDYKNDLRAIT
FT                 KITIPRYLSLHGASTYEIHAFSDASEKALNGIVYLRVLHHDGNISVHFVTS
FT                 KTRVAPIKQVSLPRLELNGAVLVSELVARVCESMSLNCHKYLYSDSTITLR
FT                 WIAASPRRWQTYVANRVAKIQELTTVESWRHVPGTDNPADLGSRGVTTSDL
FT                 LNSSFWWKGPSWLAARTIPHFSSTVIPRQEDMEERKAPVLVHHVAVDTTLL
FT                 TKYSSLLKLQRVTAYVLRFASNTHKQKQNKSKGPLTPAELNNAMMTWIRII
FT                 QQQHFREDIRSLKKNSRVGPSSNLKTLHPYVDSCGILRVSGRIHNAELPEE
FT                 SKHQAILPHDNHLTLLVIRHIHHVNFHAGFQLTWSTLLSRFWIIKGRDKVR
FT                 HIIRSCVVCRRHRSKAASQLMGNLPASRVTPSRPFLKTGVDYAGPFTLKNF
FT                 VGRVPKTYKGYLCIFVCMVTKAIHLEAVSALTTDAFIACLRRFVSRRGLCS
FT                 DIYSDCGTNFIGAEKELKTLVRSREANHTIASSLSSHGIRWHFNPPASPHR
FT                 GGLWEAGVKSAKFHLRRIIGHSAMTFEQFATVLAQIEAILNSRPLYPASSD
FT                 PGDLSALTPGHFLIGEALTAVPDQPLVDVNISRLTIFQRQQQRVQHFWKRW
FT                 SREYLNTLQQKTKWYWEEKNVKVDDMVLLVEDSAPGFWKLGRVVATNVDEN
FT                 GKVRVVTIKTAHSTLERSIVKLIPLFNDEN"
XX
SQ   Sequence 5520 BP; 1584 A; 1346 C; 1226 G; 1364 T; 0 other;
     aatggtcctt cgagccggat gcctgattga cggataatta accaatcgat tcctaattaa        60
     taaattgtga agacagttct gagtgttaac ctgcaaaaat ggatcaattc aaaatacgtg       120
     gaagctcatt taggaaaatt gaactgattg tgccagtggt taatcaacac agtaaaaccc       180
     cactaactat taacagtgcc aaactttatc ttcaacgagt tcgagaatca tgggagattc       240
     ttgacaacgc tcattcacag ctgattgagc aagcatcaaa tgaagctgca gttgagactc       300
     aagaacttgt gcgagataaa atgttttcag tgtataatga tgtggagata aagctgattg       360
     aaataattga cactttaaca ccagcgggta gtgctgcgcc tactggcgtc cttccggatg       420
     tcaagctccc acctataacg ttaccaacat tcaacggtgg acatgagaac tggttgtctt       480
     tcaaagactt gttcacagca tcagtcgaca aacgagcaga tctcgctcca tctcagaagc       540
     ttcattactt aaaatcatcg cttcaaggtg acgcagcaac tattttgaag tcaattagca       600
     ttacagattc aaactacatt gaagcgtgga aactgttaaa ggctagattc gacaatgaac       660
     gtgagattgt gcataccctt gtgaataaat tactggacca aagaaaaatt gtgactgagt       720
     gtgctactga catacgtgca ttagttgaca atactaatga atcattgagt gcattaaaag       780
     tgttaaaacg tcccacggat cactgggatg accttctcgt cgtgatcacc gtcaacaagc       840
     tcgatgatcg gaccaaacgg gagtgggcca ttcggcagac cgggacaaat ctacccacct       900
     tccaggatct acttactttc cttgagggtc acatacgagg actacaggcg tcgggtgcta       960
     ccaccaacgc cacttccaaa gacaaacgac gtgatacaca gaagagcatc agggtacatc      1020
     acgcagcaac ctcatcaatt tcatgtggaa tctgcagtgg acgacatttc actttccagt      1080
     gcccggacct tctgaagctc ccaccaaggg aaagaggcag caaggtagga caagcccgcc      1140
     tttgctacaa ctgtctttgg aaggatcatt ctactaaatc ctgtcaatca actaaatcgt      1200
     gtaaaaagtg tggaaagcga caccacactc tacttcacta cgacgctgcg ggaacgccac      1260
     agactgcaac aaccccagcg gtacaacaaa ccaattccat ggcgcaacat tcatcatctc      1320
     agatttcctc tcaccatgtt gacgctgaac ttcaatcagc tctgctgatg actgccattg      1380
     taaatattcg cgattgcaat ggagttctac aaccgtgtcg tgccttcatc gaccctggat      1440
     ctactgcaca attcatcagt gaaaattgtg tcaccagact caacttaaag cgtcaagcca      1500
     gcaacgttac cgtcactgga tttggcggca cacctgttgg aggttccaat ggtcaagtga      1560
     cagcctccgt acatagcaga ttccaaccta ctacaagcgt tcaagtaaac ttccacatta      1620
     tgccaaagtt gacccactcc atgcctacaa gttcatgcaa gatgagatgg tggcatcttc      1680
     agggacttcc acttgcggat ccatcatggt acaaacccgg acccatagac gtgttaattg      1740
     gaatcaagca ttatcatgat gtcatgctca aggagacgcg gagaggacct ccaggttcac      1800
     caacagcttc caactcaatc tttggctgga ttctgtcagg agaatgccca tcttctgaac      1860
     aagtacttca ctcgttccac gtctcagttg tcaatgaact tcatcttcta caaaagtttt      1920
     gggaaattga ggagccacca aaagcaagaa tcctaacaaa ggaagaaaag gaatgcgaaa      1980
     aacacttttg cgatactcac acgcgagatg caacaggacg gttcgttgtt caaattccct      2040
     tcaatgacaa gaagagccaa ttaggatact ccagacaagc agcggtgagg cgacttcaaa      2100
     gtgtggaacg ccgactcagc cgtctcccag aattacgaca acagtacgtc gagtttatgc      2160
     gtgaatacgt gcaacttggg cacatggagc ccattccagc accagaaatt atggaggttc      2220
     cagggagtac atactaccta cctcatcact tcgttacaaa tgaaagcagc agtaccacca      2280
     agttacgtgt tgtgttcgat ggttcctgca aaacaacaag tggattctca ctcaacgata      2340
     ccatgttagt tggagccacc ctgcaagacg acctatacga taacctacta cgtatacgtc      2400
     agaacccagt tgtcctgaag gcagacattg cgaaaatgtt tcgccagttc cagttaatac      2460
     cagaacatgc tgactttcat cgcatcgtgt ggagggattc tccggaggag ccagttcgcg      2520
     actttcgact gaaaacggtt acgtacggta ccgcttcagc tacgtaccta tccacaaggt      2580
     gcctccagca acttgccact gatgtcgcag ataagtaccc aagggcctca aaggtccttc      2640
     aatcagctat gtatgttgat gatctgatgc atagtaccac tacaacagat gaggccctta      2700
     agctattcca ggaacttaca aatgcagcca aggaaggagg aatggagtta cggaagtggt      2760
     caagtaacga cgcttctgta ctacaacaga tcccggaatc actgagggag acaaacgccc      2820
     agtcatttga tgaggacaac gcagtgaagg cccttggagt tcagtggtta ccatgcagcg      2880
     atgtcttcac tttctccgaa attgactttg atgactccag aaccgttaca atgcgtgtgc      2940
     tacttgctga cgtcgcccgt gtttttgatc ctctgggatt tatatcgtgc attaccattc      3000
     ggggaaagct cttccttcaa gagctgtgga aactcaacct gggatgggac gaccccgtgc      3060
     cagatttcat cctatcacag tggcaagact acaagaacga cttgagggcg atcaccaaga      3120
     tcacgatacc cagatacctt tctctccacg gcgcatcaac gtacgagatt catgcatttt      3180
     ccgacgcctc tgagaaagct ctaaatggaa tagtatacct acgtgtccta catcatgacg      3240
     gaaatatttc cgttcacttc gtcacaagca aaactcgtgt cgctccaatc aagcaggtat      3300
     ctttgccaag gctggagctg aatggagcag tattagttag tgaacttgtc gcccgtgtat      3360
     gcgagtcaat gagcctcaac tgtcacaaat acttgtacag tgactcaacc attacgctac      3420
     gttggattgc agcgtcccca cggagatggc agacttacgt ggccaatcgt gtggcaaaaa      3480
     tccaggagct gacgactgtg gaatcatggc ggcacgttcc aggcaccgac aacccagcag      3540
     acctcggctc ccgtggcgtt acaacatctg atttactcaa ctcgtcgttt tggtggaaag      3600
     ggccatcatg gctggcagca agaacaatac cccatttctc atcaactgtg ataccgagac      3660
     aagaggacat ggaggagagg aaggctcctg tactagttca tcatgtggcg gtggacacaa      3720
     cgctacttac aaaatattca tctttactca agttgcagcg tgtcacagcg tacgtactac      3780
     gatttgccag caacacacat aaacagaagc agaataagag caagggtcca cttacgccag      3840
     ccgaactgaa taacgccatg atgacgtgga taaggataat ccagcaacag cattttcgtg      3900
     aagatattcg gtcacttaag aaaaactcta gagtgggacc cagcagcaat ttgaagacgt      3960
     tacatcctta cgtagactcc tgtgggatcc tccgagtgtc aggcagaatc cacaatgcag      4020
     aacttccgga ggagtcaaag caccaggcaa ttctacccca cgataaccac ttgacgctac      4080
     ttgtcatcag acacatccac catgttaact tccacgcggg attccaatta acgtggtcaa      4140
     ctctactttc gagattctgg atcataaaag gaagagacaa ggtgcgtcat atcatcagga      4200
     gctgtgttgt gtgtcgacgt caccgttcca aggcagcatc acagctaatg ggaaaccttc      4260
     cagcttcccg agtaacgcca tcaagaccat tcctcaagac aggggtggat tatgcaggcc      4320
     cattcactct caaaaatttc gtgggaagag ttccgaaaac ttacaagggc tacctttgca      4380
     tctttgtttg tatggtaacg aaggccatac acctggaggc ggtgtcggcg cttacaacag      4440
     atgcgttcat cgcttgtcta cgcagatttg tgtccagaag agggctgtgc tcggatatct      4500
     actccgactg cggcacaaat ttcattgggg cggagaagga gctgaagact ttggtgcgtt      4560
     cccgtgaggc caaccatact attgcgagca gcttatcgtc acatggaatc aggtggcact      4620
     tcaacccacc tgcatcccca catcgcggtg gtctttggga agctggcgtc aagtcagcga      4680
     aatttcactt gaggaggata attggccatt cagcaatgac ttttgagcaa ttcgctactg      4740
     ttcttgctca gattgaggcg attctaaact cgaggcctct ctacccagca tcatcggatc      4800
     ctggagacct ttcggcgctt acacctggac atttcctcat tggagaagca ttaactgcag      4860
     ttcctgacca gccgctcgtc gacgtcaaca tttcaaggct tacgattttt caacgacagc      4920
     agcagagggt tcagcatttt tggaaaagat ggagcaggga atatctcaat acccttcagc      4980
     agaaaaccaa gtggtactgg gaggagaaga acgtcaaggt tgatgacatg gtgctactgg      5040
     tggaagacag cgctcctggc ttttggaaat taggtcgagt cgttgctacc aatgtagacg      5100
     agaacggaaa agtccgtgtg gtaacaatta aaacagcaca ttcaacgtta gaacgttcaa      5160
     ttgtaaaatt aattccctta ttcaatgatg aaaattagaa atcaattagt tttatttttc      5220
     tgctgactgg aggtggatgg tctttctttc ttcccctata gtctcgaaaa gatggtcagc      5280
     cggctaaacc cttaattctt cggagactga ctagtgctga gactgggacc agctactgca      5340
     ccactggagt gtgtttacac cgtgagtcct tcccggaact ccagtgcaat tttctattct      5400
     ttttctactc tttcatttcc tccatccaca ccagccagcc atcataactt ttattttatt      5460
     ttaaatattg actaactgta aattgatttt ttatgattgc cataaaggca atggggggac      5520
//
ID   BEL-32_SiCu-LTR repbase;    DNA;    INV; 651 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-651
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5029-5029 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99,9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 651 BP; 190 A; 135 C; 89 G; 237 T; 0 other;
     tgtttcgtac atgcaaatgt actataattc aaatataatt caaattgtgt gctatatgaa        60
     tatttatgta aaattaggtt ttatgataat gcgttcaata ttatgctaat gtgtcacaaa       120
     gaacaagttg taaatctttc cattgtgatc aattgtcata cgctaaaaga tcgacgtttc       180
     tcatttgtat attttactac attggtcaaa tcgatgtttt ttcttataaa gtcgtaatgt       240
     acctattttt atccaattta ggccctttaa ttcttcgcct aaatctttat tgtatgtatt       300
     ggctcgcaag tataaaagag cgagcggagg ttcactcgtg gtccagtagt tttttacgtg       360
     tcctttgcca tgcattatcg aagtctgagc atttctgacc tataaataaa tttgaccttt       420
     caagatttgc aattaaccaa tatttcctaa ctataattta ctttgctcat cataatctca       480
     catcgcccca ttcatgaacc gccgctgcac aggcgcatat tctacttctg ctccacacac       540
     caccgctgct actcatcatc gtcacgcaaa tagatccata cgtcacagtg catttatacc       600
     ttttaaattt aacttacatc ttttgaaact cttaactgta ccacactatc a                651
//
ID   BEL-32_SpEx-I repbase;    DNA;    INV; 6003 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6003
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6882-6882 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           585..5798
FT                 /product="BEL-32_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MESLTNKQEEIYSRIEKAYVNFKKSPKERITLPYCRV
FT                 RLENLEKLWEQLGNGHSKLYEEYEPDKLKQCRYVKNDVYNLAEEVYVQYKT
FT                 DLETVLDSFDIKEQDLKENSKXGSSKQCQVKLPKIIIPVFSGNYNDWVTFR
FT                 DLFVSLIHKNTSLDNVQRMQYLKGYLSGEAEQLLRQIPISDANYGRCWELL
FT                 NARYNNKRYLSHFIIKRLLSQRNLDKESAVGLKELLDNTNDCLKALSNLGV
FT                 NVXSWDIIVIHIITLKLDPESRKQWEFNVTEHNASEELPTLIQFTEFLTNR
FT                 YRALEFLDSKGNSGSRSHGNNNRGTITNKISSLHVANIQCSFCSEPHRLSF
FT                 CKQFVNKLDCNARRDFVLEKGICFNCLGNNHSAKVCNNTVRCRICKRRHHS
FT                 LLHPSNESSATSSNTIQANVGTLEHKETKLTKENVDSPISTDDMKGNQSVS
FT                 CFSTGKLRNTVLLATALVRAESKVGTYEVVRALIDQGSQISLVTEATVQFL
FT                 GLKKIPSTHIIKGVGGDKEITSKSMVTLNLRPRMYSQFNIQVQAYVLKSIT
FT                 TLLPVTKVTAVEWVDLQEKNLADPQYHTPNKINVLLGADVYSQIIEEGLKK
FT                 NVNGSVIAQCSKFGWIMTGVVESSAGVSSNIVVMHAHIDANEELKKFWELE
FT                 AEPNNQVRVLSEEEKQCEELFSATTTRDGDGRYVVRLPFREQILTHRVGGF
FT                 EEIAEKRLNSLHIRLKKNTDLKEKYNQVIQEYLQLDHMEKVPEKEKEKANS
FT                 IYLPHHAVVRDDKDTTKVRVVFDASCKGKMGYSLNDKLMIGPRLQPELRHL
FT                 LMRWRKHPICLAADIVKMYRQVKVANADIDYQRILWKEEPEDVVTHYRMLR
FT                 VTFGTASAPYLAVKALQQVSHDHGREYPTAAERVITDFYMDDLLTGCSSVK
FT                 EGLTIYREMNSLLSKAGFKLQKWMCNNEDLLNKLKEMNEELIGEGLHFKED
FT                 EIVKLLGLTWNRGSDXFQYSVKFEPEPGPVTKRKIISHIAKLYDPLGWVAP
FT                 SVILAKILIQKLWIAGLDWDEEVTTNILNEWNTYLDGLSMLSHIMIPRWYG
FT                 TTSDVTLVELHGFSDASKAAYAAVVYIRIIDADGNIRVTLVTAKTKVAPLK
FT                 QVSIPRLELCGAVMVTKLLVEVAKVMGIDIGKVHAWTDSTVVLAWLNSHPN
FT                 RWKTFVANRVSEILTTLDSTQWSHVSSGQNPADFGSRGIYPSELYKCSSWF
FT                 NGPAFLSEAKIPYSKPKQLETDLEIAKVNVTVTDESLWVRFSTFTKLIRVV
FT                 AYCRRFLKLIRNNNQFNSYLLSEELNEARKCVIRICQAEGFKEEIAVIRKQ
FT                 GHLIKLKGPLKSLSPYLDEENILRVGGRLEKSQLSLNTKHPILIPKRSKLT
FT                 DLLIAHAHAKTLHGGIQLTLTYLSTEYYIIGGKALIKSYVQRCIPCVKAAA
FT                 RTSQQLMGQLPEARASPSRPFKYSGVDYAGPIFIRTTKGRGHHAHKGYICL
FT                 FICMATRAVHIEAVSDLTTQGFLAAFKRFVARRGLCTDIWSDNGTNFVGAS
FT                 RELHDLFASERSTYLKEIRETLASTGTRWHFIPPHAPNFGGLWEAGVKSVK
FT                 FHLKRVIGDSTLTYEELSTVLVQIESCLNSRPLSTLNTESDAFDVLTPGHF
FT                 LIGEPLVAVPDHNFEMSNVSNLRRWQLTQRMTQEFWRRWSKEYLTKFLHRY
FT                 KWTCQIPEPNVGDVVVVKEDDLPPCKWLLARVVEKHPGLDKITRVVTLRTQ
FT                 RAVIKRPTSKIFILPVTQ"
XX
SQ   Sequence 6003 BP; 1944 A; 993 C; 1321 G; 1737 T; 8 other;
     tttggtcctt cgagccggat cgtctgaagt ctggaggtgt ttttgtgata cttcattggc        60
     tgggcaagcg gattgcttgc gcaaactggc caaggcactg gaagaagcag caagcagcag       120
     tagcagtgcg tcgtgcagcg cgctattgca gacggtgtgt cggatgacat taccgtcagg       180
     gatcagcagc aagggtgact ggagaaggtg ttgacgtgca gaacgtgacg tcattacgaa       240
     gacagtgatc agtgaattaa ttacgtcatc aggtcgggtc agtacaggat taaaaccgtg       300
     agtggaactt taattttatt agtgaaatca tttatgtaac taagttgtgg aagaattctt       360
     gactattcaa atttgaacca tatttacgtg aagaatttaa cttgaaaaat attgaataat       420
     atgaacatta acgtagaata tttaaactat gtttagattt agcctaattt taagagattt       480
     cgggtgagat gggtaaccta tacccgattc ttcccagatc attattgttt cattaagact       540
     tgtaaaattt ttaaacatct gttcgacttc gtataatata gaaaatggag tctttaacta       600
     acaaacaaga agaaatatac agtagaatag aaaaagctta tgtcaacttc aaaaaatcac       660
     ctaaggaacg tataacactc ccttattgca gagtaagatt agagaattta gaaaaattat       720
     gggagcagtt aggcaacggc catagtaaat tgtacgagga atatgagcct gataaattga       780
     aacagtgtcg atatgtgaag aatgacgttt ataacttagc agaagaagta tatgtccaat       840
     ataaaactga tcttgaaact gtattagatt catttgatat taaggaacaa gacctcaaag       900
     aaaatagtaa ggstggtagt tccaagcagt gtcaagtaaa attgccmaaa atcattattc       960
     cggtattttc aggaaattat aacgattggg taacctttag agatttgttt gtatcactta      1020
     twcataaaaa tacaagttta gataatgtgc agcgtatgca gtatctgaaa ggatatttgt      1080
     ctggggaggc agaacaactt cttcgacaaa tacctatttc agatgccaac tatggccgat      1140
     gttgggaact tttgaatgcg cgttataaca ataaaagata tttgtctcat tttattataa      1200
     aaagattact cagtcagaga aatttggaca aggagtcagc tgttgggcta aaggaattac      1260
     tggacaatac taatgattgt ttaaaggckc tttccaatct cggcgttaat gtasattcgt      1320
     gggacattat agtaatccat ataattactt tgaaactaga tcccgaatca cgaaagcagt      1380
     gggaatttaa tgtaactgaa cataatgcat cagaggaact gccmacacta attcagttta      1440
     ccgaattttt aaccaatcgg tatagagcct tggaattctt ggatagtaaa ggtaattctg      1500
     gatctagaag tcatggtaat aataatcgag gtacaataac aaataagata agtagtttac      1560
     atgttgcgaa tattcaatgt tccttttgtt cagaaccaca taggcttagt ttttgcaaac      1620
     agtttgtaaa caaactagat tgtaatgctc gtcgtgattt tgttctagaa aagggtattt      1680
     gcttcaattg cttgggtaac aatcactctg ctaaagtatg taataatact gtcagatgtc      1740
     gaatttgcaa acgtcgtcat cattctctac tgcatccttc gaacgagtct tctgccacga      1800
     gttcgaacac catacaggca aacgtgggaa cgttagaaca taaagaaacc aaattaacga      1860
     aggaaaatgt agatagccct atttccacag acgacatgaa aggtaaccag tccgttagtt      1920
     gcttttcgac aggaaaattg cgtaatacag ttttactagc cacagctctc gtaagagctg      1980
     agtcgaaagt aggcacttat gaggtggtaa gggcattaat agatcaaggg tcacaaattt      2040
     ctttggttac tgaagcgaca gtgcaatttt tgggattgaa gaaaattcct tcaactcata      2100
     taattaaagg agttggcggg gataaagaaa taacatcaaa gtcaatggtc acattaaatt      2160
     tacggcctcg gatgtattct cagtttaata ttcaagtcca ggcgtatgtc ttaaaatcca      2220
     taaccacgct tctccctgtt acgaaagtaa cggccgtaga atgggtagat cttcaggaaa      2280
     aaaatctggc agatccacaa tatcatactc ctaataaaat aaatgtgtta ttaggagctg      2340
     atgtttatag ccagatcata gaagaaggtt tgaaaaagaa tgtgaatggg tcagtcatag      2400
     cccagtgttc gaaatttgga tggataatga ctggtgttgt agagtcatct gctggggtgt      2460
     cttcgaatat agtcgtgatg catgctcata tagatgcaaa tgaggaatta aagaaatttt      2520
     gggagttgga agccgaaccc aacaatcaag taagagtgtt gtcggaggaa gaaaaacaat      2580
     gtgaagagtt attttcggca accaccacca gagatggaga tggaaggtat gtggttagac      2640
     ttccattccg cgaacagatt ttaactcacc gggtaggtgg ttttgaagag atagctgaaa      2700
     aacgattaaa ttcattacat atcagattga agaaaaatac agatttgaaa gaaaaatata      2760
     atcaagtaat ccaggaatat ttacagttag accatatgga aaaggtacct gaaaaagaaa      2820
     aggaaaaggc aaactcaata tacttaccac accacgcagt tgtaagggat gataaggata      2880
     caaccaaggt gcgtgtagtg ttcgacgcgt cctgtaaagg caaaatgggt tattcattaa      2940
     acgacaaatt gatgattgga ccccgcttac aaccggaact tcgacattta ttgatgcgtt      3000
     ggaggaaaca tccgatatgt ttagcggcgg acatcgttaa gatgtatcgg caagtaaaag      3060
     tagctaatgc tgacatcgat tatcagagaa tcctgtggaa ggaagagccg gaagacgtag      3120
     taacacacta tcgtatgttg agagtcactt tcggcactgc atcagctcct tacctggcgg      3180
     tgaaggccct ccagcaagtt tcgcacgatc atggcagaga atatccgaca gctgctgaaa      3240
     gggtaataac cgatttctac atggatgatc tgttaaccgg ttgcagtagt gttaaagaag      3300
     gtttaacaat ttatagagaa atgaattcat tattgagtaa agcaggattt aaactacaaa      3360
     aatggatgtg caataatgaa gatttactta ataaattaaa ggaaatgaat gaggaattaa      3420
     tcggagaagg tttacacttt aaagaggatg aaatagttaa attgttagga cttacctgga      3480
     atcgtggttc cgatmatttc cagtattcgg tmaagtttga accggaacct ggacctgtaa      3540
     ctaaaagaaa aataatttca cacattgcta aattatatga tccacttggt tgggtggcac      3600
     ctagtgttat tttagcaaaa atacttatac aaaagctatg gatagcagga ttagactggg      3660
     atgaggaagt aacaactaac attttaaatg aatggaatac ttacctggat gggctatcaa      3720
     tgctttcaca tatcatgata ccgcgttggt acgggacgac ttcggatgtt actctcgttg      3780
     aactgcatgg attctccgat gcgtccaagg cagcttatgc agcagtggtt tatattcgta      3840
     ttattgatgc tgatggtaac atacgtgtta ctttagtgac ggccaagaca aaggtagcac      3900
     ccctcaagca ggtatctatt ccaaggcttg aattgtgcgg agcagtaatg gtcactaaac      3960
     tcctagttga agtagctaag gtcatgggga tagatatagg taaagttcat gcgtggactg      4020
     attccacagt agttctagca tggctcaata gccatcctaa ccgctggaag acgttcgtcg      4080
     ctaaccgggt ctcagagata ttgacaacgt tagattcaac ccaatggtcg catgtttctt      4140
     cgggtcaaaa tcctgctgac ttcggatctc gaggaatcta cccctcggaa ttgtataaat      4200
     gttcttcctg gtttaacggt ccagcatttc tgtcggaagc aaaaatacct tacagtaaac      4260
     caaaacaatt agagaccgat ttagaaattg cgaaggttaa tgtcactgtc actgatgagt      4320
     ccctatgggt tagattttcg acgtttacaa aattaatacg ggttgtggcc tactgtagac      4380
     gttttttgaa gttaataaga aataataacc agtttaatag ctatcttcta tcagaagagt      4440
     tgaatgaagc tcgcaaatgc gttattagaa tttgtcaagc tgaaggtttc aaggaagaga      4500
     ttgctgttat caggaaacaa ggtcatttga tcaaattaaa aggacctctc aagtctttga      4560
     gtccttattt agacgaagaa aacattttac gggtaggagg aagattagaa aaatcacagc      4620
     tttctttgaa tacaaaacac ccaatactga tacctaaaag gtctaaatta actgatttac      4680
     taatagcaca cgcgcatgcc aaaacccttc acggtggaat ccaattaacg cttacatact      4740
     taagcaccga gtattatata attggaggta aagctttaat taaaagctat gtccaaaggt      4800
     gcattccatg tgtaaaagca gctgcaagaa cttcacagca gttgatgggc caacttcccg      4860
     aggctagagc tagtccttca agaccattta agtatagtgg cgttgattac gcaggtccga      4920
     tatttattag gacgacaaaa ggacgaggtc atcacgctca taagggatat atttgcttat      4980
     ttatttgtat ggcaacacga gcggtgcaca ttgaggcggt cagtgattta actacacaag      5040
     gatttttagc tgcgttcaaa cgtttcgtag ctcgtagggg tctgtgtacg gatatttgga      5100
     gcgataacgg gacaaatttc gtcggggctt caagagaact ccacgattta tttgcatcag      5160
     aaaggtcaac ttacttaaag gaaatacgtg aaacattagc ttcaactggg acaagatggc      5220
     attttatccc acctcatgcg cctaacttcg gaggattgtg ggaggcgggc gttaagtcag      5280
     taaagttcca tttaaaacgt gttataggcg attcgactct aacttatgag gaactatcca      5340
     ctgtattggt gcaaattgag agttgcctta attctaggcc tttgtccact ttgaacacag      5400
     agtctgatgc ttttgatgtc ttaacgcctg gtcatttcct gattggggaa cccttggttg      5460
     ctgtacctga tcacaatttt gagatgtcta acgtatccaa tttacgtcgt tggcaattaa      5520
     cacaacgaat gacgcaggag ttttggcgtc gttggtcaaa ggaatatttg acaaaatttt      5580
     tacatcgtta caagtggacc tgtcaaattc cggaaccaaa tgttggcgat gtagtagttg      5640
     taaaggagga tgacttgccg ccttgtaaat ggcttttggc gagagttgta gagaaacacc      5700
     ctggactgga caaaattacg agagtagtta ccttacgtac tcaaagagct gtaataaaaa      5760
     ggcccacttc aaaaatattt attttacctg tcactcagta gttataatac agctgttttc      5820
     tgatacagag ataaatgttt tgttttgtga tatgattata gaaatgtatg ttgtataatt      5880
     ttttttgttt atattgtaag gttctgtttt aatttagatg attttctcat ggtgggcggt      5940
     gcctatataa atgtgattat cttaatttaa ggactatgaa aaatagttcc ttggtgggcg      6000
     gaa                                                                    6003
//
ID   BEL-32_SpEx-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-32_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-233
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6939-6939 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 233 BP; 62 A; 32 C; 57 G; 82 T; 0 other;
     tgttgaaaat agttagtttt ttataactag atggcgttgt tcaaaaagcc attttttctg        60
     aatcgcggtg ttaagattct ccgtgagttg actaggtccg ctaagatgta agttttgttt       120
     agtactgaat atacagatat aacttgtgac gtagtagttt cattgtgata tcctcatcct       180
     tgtgacggtc gtgagtgctg cagaaacagt gcgggaaagt gatagagtgt tca              233
//
ID   BEL-33_AA-I repbase;    DNA;    INV; 5810 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_AA_;
KW   BEL-33_AA-LTR; BEL-33_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5810
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions 1156201 1162010.
XX
CC   Positions [4867-5415] - Integrase core
CC   'CCCCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(10..3213,3217..5565)
FT                 /product="BEL-33_AA-I_1p"
FT                 /translation="MNIHRHNRNSTEVSSYNCAVCSGPDHDDVAMVGCDNC
FT                 SQWFHFKCVGVSADVKEVSWSCINCKEKAAHQSYGRTAEDSGQKKPAAAQT
FT                 KASEADVKDVSVEVDELEKELQRLEETRKLELRKMELEKTVFRRRLEVQRE
FT                 LVEQRQKVEREKRQMELELEKEHLQKAIADEEAYRKAQQAMRNEMQSKLEQ
FT                 LRIQRTSDNVQAICGPERSKIAGSNAANGQPKNYCETYQKHSTPKGTGIIP
FT                 EMSGTRNESPPIRLNEENTTSESEGDDVSETTQVSVYKGPTKAQLSARQFL
FT                 VRKLPVFSGHPEDWPMFISSYETANEACGFSNVENLARLQESLKGQALEAV
FT                 RSRLLLPNAVPQIIETLRMLYGRPEQLLNMLLAKVRKADPPKADRLASFIG
FT                 YGIVVQQLVDHLDATNMRDHLFNPMLIQELVEKLPAGTKMEWVRYKRKVSA
FT                 VTLRTLADFLSEIVRDASEATMFAEGASVPDNRSKKGKVREGYLNAHRMSP
FT                 DEEEEQRNSMNSKKPCRVCNRVDHRIRNCDQFRKLSWENRWEVVYKWKLCK
FT                 NCLNEHGDSRCKLNYRCNVERCGEAHHPLLHPEEALSDCNVHGVQHHSVIF
FT                 RLIPVTIYNGKIAVNTVAFIDEGSSYTLVETSLVNQLNLKGRTQPLRVTWT
FT                 AGVSRVEKDSQIVDLSISARNSSKRFTIHKAHTVQELKLPEQTLGFKIMAN
FT                 KYQHLQSLPVVDYNHAVPQILIGLKDLHLYAPLETRMGKPGEPIAVKSKLG
FT                 WTVYGPISAAAPERNLIGHHLCEGISNQEIHDLIKNQYAMEESGISIALLP
FT                 ESADDQRARMILENTTVKVGERYETGLLWRTDERCLPDSYPMALKRMKSLE
FT                 KRLLKDDAMYGKVRTLIADYVKKGYAHKATVRELQESRPEQVWYLPLNVVV
FT                 NPKKPEKIRLVWDAAATVEGISLNSQLLKGPDMLSSLPSVISRFREREVGF
FT                 GGDIREMYHQLLIRKDDKQYQRFLYRNDAESSVDVYVMDVATFGATCSPCS
FT                 AQFVKNKNANEAAEKYPDAARAIVDNHYVDDYFDSTDTVEEAIQRSKEVRY
FT                 VHSCAGFEIRNVANCDEILQSLGEPKVEQQVHFNQDKDTGTERVLCIVWSA
FT                 DRDEFSFSTKLRDELMPFLSGERRPTKRIVLSCVMSLFDPLGLLAPFTVYG
FT                 KILIQDLWRSGTEWDEIIDIECLEKWKNWIRRLPEVEEIRVPRYHFTKGSE
FT                 VELKTLQLHVFVDASQYAYGCAAYFRVLMAGQPVCSLVMAKSKVAPLKQLT
FT                 IPRLELQAAVLGARLMNTVIDTHTLAITECFIWSDSRTVLSWIHSDQRKYK
FT                 QFVSFRIGEIHSLTKLNQWRWVPTKCNVADEVTKWQAGRKFESKSAWFNGP
FT                 SFLYLPESELPEQTLVIANVLEEMKTVHLFHDVSILEPLVNPERISRRKVL
FT                 VRSTACVLRFISNCRLKAKGQKIETILASNNIRQLVQKKFPSITVPLKREE
FT                 HQKAESYLWKIAQNDAFGEDMKILQKNQHLPCEKQFSLEKGSYLYDKSPFL
FT                 DDNGVIRMEGRTKYGEFIPFELRFPIILPRRHPITSKLLEHYHQKLGHANT
FT                 ETVVNELRQRFCIPYLRADLKRITQMCVRCKLNKSKPVTPRMAPLPVQRFT
FT                 PYKRPFSYTGVDYFGPVTVTVGRRSEKRWIALFTCLTTRAVHLEVAHSLSA
FT                 QSCIMTIRRFICRRGSPIEFFSDNGTNFKSASKEILRNIDVECGEIFTDAT
FT                 TRWNFIPPSAPHMGGAWERLVRSVKAALSELDDGKKLTDEILLTTIIEAED
FT                 LVNSRPLTYLPLDSGSETALTPNQFLRGMVTAVQEQPIGQIDDAEALRDNY
FT                 KRSQRLADLLWKRWLSEYLPTLNQNKVAC"
XX
SQ   Sequence 5810 BP; 1781 A; 1139 C; 1472 G; 1418 T; 0 other;
     atcttaaaaa tgaacataca ccgacacaac cgcaactcga ccgaagtatc tagctacaac        60
     tgtgcagttt gtagtggtcc ggatcacgat gatgtggcca tggtgggatg cgacaattgc       120
     tcgcaatggt ttcacttcaa gtgcgtggga gtttctgctg acgtaaaaga agtttcatgg       180
     agttgtatta actgcaagga aaaagctgcg catcagtctt atgggcgtac ggcagaagac       240
     agtggccaga agaagccagc tgctgcccaa acaaaggcat cagaggcaga tgttaaggac       300
     gtatcagtgg aagtggatga gcttgaaaag gagttgcaac ggctggaaga aacacggaaa       360
     ttagagttga ggaaaatgga gctggagaag actgtattcc gtcggcggct ggaagttcaa       420
     cgagagttgg ttgagcagag acaaaaggtg gaacgtgaga agaggcagat ggagcttgaa       480
     ctcgaaaagg agcatttaca aaaggcgatt gctgatgagg aggcctatcg taaagcacag       540
     caagcaatgc ggaatgaaat gcagagtaaa ttggaacagc tgcgtattca acgcacctcg       600
     gataatgttc aagctatatg cgggcctgag agaagcaaaa ttgctggatc aaacgctgca       660
     aatggacaac cgaagaacta ctgtgaaacg tatcaaaaac attcgacacc aaagggtaca       720
     ggaattattc ctgaaatgag tggcaccaga aacgagagcc ccccaataag gcttaatgaa       780
     gaaaacacta cctcagaatc ggaaggagat gatgtttccg aaacaactca agtatcagta       840
     tataaaggtc caaccaaagc tcaactttcg gctagacagt tcctagtgcg taagctaccg       900
     gttttcagtg ggcatccgga agattggccg atgtttattt cgagctacga aacggcaaac       960
     gaagcgtgtg gtttctccaa tgtggaaaat ctggctcggt tacaagagag tctgaaggga      1020
     caagcgctgg aagcagtgcg cagccgtctg cttttgccga atgccgttcc tcaaatcatt      1080
     gagacactgc gtatgttata tggtagaccc gagcagttac taaacatgct gctagcaaag      1140
     gttcgcaagg cggatccacc aaaagctgat cgattggcgt cgttcattgg gtacggaata      1200
     gttgttcagc agttagttga ccacctggat gctacgaaca tgagggacca tctgtttaat      1260
     cctatgctga ttcaggagtt agtggaaaag ctacccgctg gtacgaaaat ggaatgggtc      1320
     cgctacaaga ggaaggtgag cgcagtaact ctgcgaacct tagctgattt tctatctgaa      1380
     atcgtcagag atgccagtga agctacaatg tttgctgaag gagcatccgt acctgataat      1440
     cgatcgaaga aaggaaaagt gagagaaggg tacttaaatg cacaccgcat gtcaccagat      1500
     gaagaagagg aacaacgtaa ttcgatgaat agcaagaagc cttgccgcgt gtgcaatcgt      1560
     gtagaccatc gcattaggaa ttgtgaccaa tttcgtaaac tgagctggga aaatcgctgg      1620
     gaagttgtct acaagtggaa actgtgcaaa aattgcctaa atgagcacgg tgatagtaga      1680
     tgcaagctca actaccgctg taacgtagaa cgttgtggag aagctcatca tcctttacta      1740
     catccagaag aggctttatc agattgcaac gtacatggcg ttcagcatca ttccgtaatt      1800
     ttccgcctga ttcccgttac tatatacaat gggaaaattg cggtaaacac cgttgcattt      1860
     atagacgaag gctcttcgta tacgttagta gaaacttcgc ttgtaaatca attgaatctc      1920
     aaaggcagga cacaacccct gcgtgttact tggacggctg gtgtatcgag agtagaaaaa      1980
     gattcgcaga ttgtagattt gtcgatttct gcgagaaatt catcgaaacg tttcaccata      2040
     cataaggcac atactgtgca agaacttaaa ttgccagaac aaacgctggg atttaagatt      2100
     atggcgaaca aatatcaaca tctccagagt ctacctgtgg tagattacaa tcacgctgtt      2160
     ccgcaaatat tgattggatt aaaagatctt catctttacg cccctctgga aactaggatg      2220
     ggaaaacctg gtgagccaat agcggtcaag tcgaagttag ggtggacggt ttatggacca      2280
     atttctgctg ctgctcctga gagaaacctt attggtcatc atttgtgcga aggaatttcc      2340
     aaccaagaga tacacgacct cataaagaat caatacgcta tggaagaatc gggtatttca      2400
     attgctttgc tgccggagtc agccgacgat cagagggcca ggatgattct ggaaaataca      2460
     acggtgaaag ttggcgagcg ttacgagaca ggattactat ggaggaccga tgaacgatgt      2520
     ttgccggaca gctacccaat ggcgttgaaa cgaatgaaaa gcctagagaa acgtttgctc      2580
     aaggatgatg ctatgtatgg aaaggtgcgt acgttaattg ctgattatgt gaagaaaggc      2640
     tatgctcata aggcaacggt tcgagagctt caggagtcta gaccggaaca agtttggtat      2700
     cttcctctga acgtcgtagt gaatcccaag aagccagaga agatccgttt ggtgtgggat      2760
     gctgcggcca cagttgaagg aatctcatta aactcccagt tacttaaggg gcccgacatg      2820
     ttatcttcac ttccttcagt aattagccgg tttcgagaaa gagaagtggg attcggtgga      2880
     gatatcagag aaatgtatca ccaattgctc attaggaagg atgataagca gtaccaacgt      2940
     tttttgtacc ggaacgatgc tgagtcaagc gtggatgttt acgtgatgga cgtagcaacc      3000
     tttggggcga cgtgttctcc gtgttccgct caatttgtta agaacaaaaa cgcgaatgaa      3060
     gcggctgaga aatatccaga tgcagcaaga gcaattgttg ataatcatta cgttgatgat      3120
     tatttcgaca gtactgatac tgtggaagaa gcgatacaac gatccaaaga ggtacgatat      3180
     gtgcattcat gtgcagggtt tgagattcga aactgagtag cgaattgcga cgagattcta      3240
     caatcgctgg gggagcctaa agtggagcaa caagtacact tcaaccagga taaagatact      3300
     ggaactgagc gtgttctgtg tatagtatgg agcgcagata gggacgagtt ttctttttcg      3360
     accaagttgc gtgatgagtt gatgcctttc ttgagtggcg aacgaaggcc aacgaaacgt      3420
     atcgtgctaa gctgtgtaat gagtctattt gacccgttgg gactcttggc accatttaca      3480
     gtttacggaa agatactgat acaggatttg tggcgaagcg gaaccgaatg ggacgagatt      3540
     attgatatcg agtgtctcga aaaatggaaa aattggatta gaagattacc agaagttgaa      3600
     gaaatcagag tgcctagata ccatttcaca aaaggatcag aagtcgaatt aaaaactctt      3660
     caattgcatg tttttgtcga cgccagtcaa tatgcctatg gatgcgccgc ctatttccgg      3720
     gtactgatgg cgggtcaacc agtatgttct ttagtaatgg ctaaatccaa agttgctccg      3780
     ctaaagcaac taactattcc gcgtctggag cttcaagcag cggtgcttgg agcacggctg      3840
     atgaatactg tgattgacac gcacactctt gccataacag agtgtttcat ttggtcggat      3900
     tccaggacag tgttgtcctg gatacactcc gatcaacgaa aatacaaaca atttgtttcg      3960
     tttcgcattg gagagattca cagccttacc aaactcaatc agtggcgatg ggtgcctacg      4020
     aaatgcaacg tggcggatga ggttacaaaa tggcaagcag gacgtaaatt cgaatcaaaa      4080
     tcggcatggt ttaacgggcc aagctttctg tatctgccgg agtccgagtt gccagaacag      4140
     acattggtta tagcaaacgt actagaagaa atgaagacag tccatttatt ccacgatgtt      4200
     tcaatactag aaccattagt gaaccctgag agaatctctc gcaggaaggt tctagtgcgt      4260
     tctacggctt gcgttttgcg gtttatctca aattgtcgat taaaggcgaa ggggcagaaa      4320
     atcgaaacga tactagcatc taacaacatt cggcagttag tacagaagaa atttccttct      4380
     ataacagtgc cgttgaaacg tgaagaacat caaaaagctg aatcctattt atggaagatt      4440
     gcgcaaaatg atgcttttgg agaagatatg aaaatattgc aaaagaatca acatcttccc      4500
     tgcgaaaaac agttttcact ggaaaaaggt agttatctgt atgataaatc tccatttttg      4560
     gatgacaacg gcgtgattag gatggaagga aggacgaagt atggagaatt cattcctttt      4620
     gaactgagat ttcccataat tttaccgaga aggcatccaa taacatcaaa actactagaa      4680
     cattatcatc agaagctagg ccacgcaaat accgaaactg tggtgaacga acttcgtcaa      4740
     cggttttgca taccgtatct tcgtgcagat cttaagcgta taacgcagat gtgcgttcgg      4800
     tgcaaactaa ataaaagcaa gccagtcaca ccaaggatgg cccctctccc agtacagcgg      4860
     tttacacctt ataaaagacc ctttagttat acaggagtag actatttcgg tccagtaacc      4920
     gtgacggttg gtagaagaag tgaaaaacgg tggatagcat tattcacatg tctcacaacg      4980
     cgggctgtgc atctggaagt cgcccacagc ttgtcagccc agtcctgcat tatgacgata      5040
     aggcgattca tatgtcgacg aggctctccc atcgagtttt tttccgacaa tggaacaaac      5100
     ttcaaaagtg cgagcaagga aattcttcgg aatatcgatg ttgaatgcgg agaaatattt      5160
     actgatgcta cgacccgatg gaattttatc ccaccctcgg ctcctcatat gggcggggcc      5220
     tgggaacgct tagtacgatc agtaaaagcg gctttaagtg aactcgatga tgggaaaaag      5280
     ttaacggacg aaattcttct tactactata atagaagcag aagacttagt gaattcacgt      5340
     ccattgactt atcttcctct ggacagcggt tcagaaacag ccttgactcc aaatcagttt      5400
     cttcgtggaa tggtgactgc ggtgcaggaa caaccgattg gacaaatcga cgatgcagaa      5460
     gcgttgcgcg acaactacaa gaggtcacaa cgtctggcag atctactctg gaagcgatgg      5520
     ctttcggagt atttgccaac attgaaccag aacaaagtgg catgctgaaa cagaaccgtt      5580
     ggtggaaggt gatgtggtgt atgtaacgga cgaaaatcag cgcaaatctt ggattcgtgg      5640
     catagtcatg caaggattta aaggaaagga tggtaggatt aggcaagcgc tagtaagaac      5700
     aacaagaggt ttgctgaaac gaccggtaac taagttggcg gtgcttgaaa ttcagaatcg      5760
     taaatctggc cataaggcgg agcctatgcc aatgttacgg ggcggggcta                 5810
//
ID   BEL-33_AA-LTR repbase;    DNA;    INV; 552 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_AA_;
KW   BEL-33_AA-I; BEL-33_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-552
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions 1155649 1156200.
XX
SQ   Sequence 552 BP; 205 A; 86 C; 107 G; 154 T; 0 other;
     tgtaagcacc acccactgtg aagtatatat acctgttaaa gagtaacctt gcgcctattg        60
     tcaaaattag ggagaaggaa agagatgatg atgaaaggta aataaaaaca aagaaaaata       120
     cctcgttgag caattataaa agttagctgc aagttattat ataaaatttc ttcaatttaa       180
     tgcatttgga aagtgaagta taaggaaaat agctatcgta agtagtatct ctccaaatat       240
     agctagtttt gctgaacaat tgtgtactta gcaggtatat tacaccggag caaagtctgt       300
     acgtcgacgg aaaattatta ttaaaactaa cctgaaacta agctgaattt cggcacaatt       360
     agtacagagg ttgtcgggaa aaggtgagca cacgcaagga ttgcaaggaa actgttcatg       420
     taagcactgt tatactttac cgatgtacaa aactatgacc tgatactaaa ttctaataaa       480
     atttcagttt taagctgccc aaaacagctg ctttaaaaag gtatcgttca ttacttgcga       540
     ggagttcgaa ca                                                           552
//
ID   BEL-33_AnFu-I repbase;    DNA;    INV; 6476 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6476
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 682-682 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..6371
FT                 /product="BEL-33_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEHGDSTVQDVQQTSQREDREFSSQEPMAERDSVVAT
FT                 NATPSCSTRSPVAVRGSSQSEGILSHRGEQTMQTPWGYFPVRHRNAIALDA
FT                 TPEAARPFPYHTHTHAQNGHTQPEGLGRVTDDAANSAMATAHRSATPEGFM
FT                 TPNQEHRRMQLELERLRIELQQRKLELRERELEFSKKECDIARESQCELEK
FT                 ASAWLLHRENGSLDAAGRRVGINAERFRYENNPTVASSKYAPTHIPTRPVN
FT                 DAAKRDAEFREWQSAMEDLMSRDPRRTNGTTHRPGHDFGHSTSAHPHATDH
FT                 DTLAPAHGHDFGHSTSAHPHTTDHDTYAPAHGHDFGHSTSTYTHENRYGHI
FT                 TQPHGLDHGYCTFIPPRGLGQANSTFAQPRTSAPATYPHNIFADRHAGTFG
FT                 SLGSTFLSQSQIAARKASGRELPTFSGSAEQWPLFISSYEHSTAICGYSDY
FT                 ENLLRLQKALKGAALEAVSSLLLLPSGLKEAIEVLKLRFGRPEVIVENLME
FT                 KVRRMPAPRAERLETLVEFGFAVRNLCATIQASGLPEYTCNVILLKELIAK
FT                 LPSGTCVEWARHQQQLPSVTLSDFGRWIGELATALSRVVPVKSERFDRSGS
FT                 GDLDRRSSAKPVRPDQRQPTTARLHMHAATTSGKYSPTNPNVPSASKCSAC
FT                 QGDCAALDTCQRFQSMTVAERKEHIRDKKLCRKCLKYHKGWCHLKTLCGLN
FT                 GCEAMHHKLLHGAMSTGNAPEKHCLTHSGSNDCTLFRYVPVTVRGKDGRVV
FT                 NTFAFLDEGSSSTFMDHSLMEELGLTGMPRPLCLKWTGDTSRDEKASVQLA
FT                 VQISGAYKGAPVHNLAKVHTVTNLALPSQSIDVQQLEAAYPHLKRLPLTSY
FT                 TNAVPRLLIGVDNCRLGKPLKCTEGRMNEPVASKTRLGWIIYGPCPIATAN
FT                 VSGGHRSFHVCSCEENNDNLLTAEVKAFFSLDSLGITKYPHPVKSKDDERA
FT                 LAILTKKTKLQGDRYETGLLWKYDDIRLPCNKAAALKRHVTLKRKMQKDPE
FT                 LAAAINAKMRDYIEKGYIRRLSASEVEDKQPNDWFLPIFPVTNPNKPGKIR
FT                 MVFDAAAKVSGVSLNSFLLAGPDLLAGLLSVLFKFREFHVAIVGDIREMFH
FT                 RVMMRKEDQRSQMIYWDGDDPNGXPAVYAVTVMTFGAACSPSSAQFVKNCN
FT                 AERFEKQFPRATKCITDEHYVDDMLVSVETEEEAIRLAKEVRYVHASGGFE
FT                 IRNWISNSLAVVKQLQTQAEQQKGINIGYDLATEKVLGMWWDTASDTFTFR
FT                 LSGHFNEKLQAGTTAITKRNILRILMSIYDPMGLLGLFLMFLKILLQEIWR
FT                 SGTGWDQELDNHLAEKWLTWQRVLPEVQKVRINRCYRKLTSVAARVELHVF
FT                 CDASETGMAAVAYLRFEEGGTIECALVGSKTRVAPLRFISIPRLELQAALI
FT                 GARLAATIVNSHRLNISRTVYWTDSRNVLSWLRSDHRRYNQFVAFRVGELL
FT                 ETTNVEQWRWIGTKSNVADDGTKWTKTPDLTPTSRWFNGPSFLWGPESNWP
FT                 MYGAPTTSTAEELRPNVLHHSIADRLIDFNRFSRWKRLLRAVGYVVRFIAN
FT                 VRRGMRRDIVLGGPLTQEELAQAECILFSRIQADVYAREICCLKREPPRSQ
FT                 PWKSGVEKSSPLYKLSPVLDEHGVVRMRGRLAGSLNVSETLRQPIILPRKH
FT                 RGTDLLILDCHERYKHCNHRTVVSELRSRFYIPRLLGEYNRVRKSCQRCKI
FT                 NGATPEPPSMGNLPPQRVAVGQRAFSFTGIDYFGPLLVAVGRRTEKRWGVI
FT                 FTCLTSRAIHLEMAHSLTTASCIMAIRRFVARRGKPLEVITDRGTNFVGAA
FT                 RELEEALQAVDVDALMTEFAGPDMKWSFNPPAAPHFGGCWERLVRSVKKVL
FT                 GQFNLPRNPTDEVLMSAFTEIELIINSRPLTYVPLDDEMDTPLTPNHLLLG
FT                 SSNGSKPPVVFTEGGAVVKSAWRAAQHFADLFWKRWIAEYLPMLTRRSKWF
FT                 ENVRPIQVGDTVVVVDNCLPRNSWPKGRVIEVVRAEDGQVRQASVRTTSGI
FT                 YKRPATKLALLDIESKILTGEQRD"
XX
SQ   Sequence 6476 BP; 1731 A; 1595 C; 1786 G; 1361 T; 3 other;
     ttccaaaaaa ttagtttgga aattctaaga aaaaattagt ctgttggaaa ttctaaaatt        60
     tcaacaagtt tgcgatagtt tgcaagagta tttgcttcgc aaagctaatt ttagtgcgcg       120
     tttacttcga aagtcgaaag taaattatcc acggaggata atcgcgatcg cgaaacgaac       180
     ggtagtgtaa cagtgcgcgc gtattaagtg ttattcgcga gatggaacac ggcgattcca       240
     cggtgcaaga cgtgcaacag acgagccagc gagaggatcg tgaattctcc tcgcaggaac       300
     cgatggctga acgcgatagc gtagtcgcga cgaatgcgac gccatcctgt tcgactcgat       360
     cgcccgtggc cgtacgagga tcgtcccaaa gcgaagggat tttgagccac cggggcgagc       420
     aaacgatgca gactccgtgg ggatactttc cggtgaggca caggaatgcc atcgcgctgg       480
     acgcgacacc agaagcagcc cggccgttcc cttatcacac acacacgcac gcacaaaatg       540
     gacacacgca accggagggt ttgggacgcg tcaccgatga cgcagcaaac tcggcgatgg       600
     cgaccgcgca tcggtcagca acccctgaag ggttcatgac ccctaaccaa gaacatcgga       660
     ggatgcagct cgaactcgag cgtttaagaa tcgagctgca acaacgaaag cttgaactcc       720
     gcgagcgcga gttggagttt tcaaaaaagg agtgtgatat tgcgcgcgaa tcgcaatgcg       780
     agttggaaaa ggcgagtgct tggctactgc atcgagaaaa tggttccctt gatgctgctg       840
     gcaggcgtgt tgggatcaac gcggaacgct tccgatatga aaacaaccct accgtggcca       900
     gcagcaaata tgcacctacg catatcccaa cgaggccagt gaacgacgcc gcgaaacgtg       960
     acgcggaatt tcgcgagtgg caaagcgcga tggaggatct catgtcgcga gatcctcgcc      1020
     gcacaaatgg aacaacgcac cgacccggac acgattttgg acatagcaca tcggcacatc      1080
     cgcacgcaac cgatcacgac actttagcac ccgcacacgg acacgatttt ggacacagca      1140
     cgtcggcaca tccgcacaca accgatcacg acacttacgc acccgcacac ggacacgatt      1200
     tcggacacag cacgtcaaca tacacacatg aaaaccgata cggacacatc acccagccac      1260
     acggactcga tcacggttat tgcacgttta taccgccccg cggacttggt caggcgaaca      1320
     gcacctttgc tcaaccgcgt acgagcgcgc cagcaacgta cccgcacaat attttcgccg      1380
     ataggcatgc gggaactttc ggaagcttgg gatcgacttt cctaagtcaa tcgcaaattg      1440
     cagcgcggaa agccagtgga cgagagctgc cgacgttttc gggttccgcg gaacagtggc      1500
     cgctcttcat ctccagctac gagcactcaa cagccatctg cgggtactct gactacgaga      1560
     acctgctgag gctacagaag gcgttgaagg gagctgcgct ggaagcggtc agctcgttgt      1620
     tgttgctgcc ttccgggcta aaggaagcaa ttgaagtact taagctacgg tttggcaggc      1680
     cggaggtgat cgtagaaaat ttgatggaga aagtgagacg tatgccagca ccacgagcgg      1740
     aacggctgga aactctggtg gagtttggat tcgcggtgag gaacctgtgt gcgaccatcc      1800
     aagcatctgg gctaccggaa tatacctgca acgttatcct gctgaaggag ttgatcgcga      1860
     agctgccgtc gggcacgtgc gtcgaatggg cgaggcacca acagcagctg ccctccgtta      1920
     cgttgtcgga cttcggaagg tggatcggcg agttggctac agcacttagc agggtggtac      1980
     cggtgaagag tgaacgtttc gaccgcagtg gatctggcga cttggaccgt cggagcagtg      2040
     cgaagccggt acgaccagat cagcgccagc ccaccaccgc acgtttgcac atgcacgccg      2100
     ccaccacgag cggtaagtac tcaccaacaa atccaaatgt tccaagtgct tccaaatgtt      2160
     cagcttgcca gggggattgt gccgcactgg atacgtgcca acgattccaa tcgatgaccg      2220
     tcgctgaaag gaaggaacac ataagggata agaagctgtg ccgaaaatgc ctcaagtacc      2280
     ataaggggtg gtgccatctt aaaacgctct gtggtttgaa cggctgcgag gcgatgcatc      2340
     acaagctact ccatggggcc atgagtaccg gtaacgcgcc ggagaagcac tgtttaacgc      2400
     attccggctc gaatgattgc accttgttcc gttatgtccc ggtaacggta cgtggtaaag      2460
     atggcagagt ggtcaacacg ttcgcgtttc tcgacgaagg atcatcgtca accttcatgg      2520
     accacagtct gatggaagag ttgggtttga ctggtatgcc ccggccgttg tgtctcaagt      2580
     ggacaggaga tacaagcaga gatgaaaagg cctccgtcca attagcggtg cagatctctg      2640
     gtgcgtacaa aggggctccc gtacataact tggctaaggt gcacaccgtt accaatctag      2700
     cgttaccctc acagtcgatt gatgtgcaac aattggaagc agcgtaccca cacctgaaac      2760
     gtttgccgtt aacctcttac acaaatgccg tacctcgact tctaattggt gtagacaact      2820
     gtaggttggg aaaaccccta aaatgcacag aaggaaggat gaatgaaccg gttgcatcaa      2880
     aaacgcgctt gggctggata atatacggac cttgtccaat tgcaaccgct aacgtgtctg      2940
     gaggtcacag aagttttcat gtttgcagtt gtgaggaaaa caacgataat ctgctgacgg      3000
     ccgaggtaaa ggcattcttc tctctggatt cactsggtat caccaaatat ccgcacccag      3060
     tcaaatccaa ggacgatgaa cgagcgctgg cgatactcac caagaaaaca aagctgcagg      3120
     gtgacaggta cgaaacggga ctactgtgga aatacgacga catccgcttg ccgtgtaata      3180
     aagcagcagc tttgaaacgt cacgtgaccc taaagaggaa gatgcaaaag gatccagagt      3240
     tagcagcagc aattaatgcc aagatgagag actacattga gaaaggttac atccggcgtt      3300
     tatcagcaag cgaagtagaa gacaagcagc ccaacgactg gtttttaccc atattcccgg      3360
     taaccaaccc caataagccg gggaaaatcc gcatggtttt cgacgcagca gcgaaggtga      3420
     gtggagtaag cctgaattcc tttcttctag cgggacccga tttgctcgcc gggctcctct      3480
     ctgtgctctt caaattcaga gaatttcacg tggcgatcgt cggagacatt cgcgaaatgt      3540
     ttcaccgagt gatgatgcgt aaggaagatc aacggagcca gatgatctat tgggatggag      3600
     acgacccgaa cggcsatcca gcagtgtacg cggtcaccgt tatgactttc ggcgccgcat      3660
     gttctccgag cagcgcacaa ttcgtgaaaa attgcaacgc ggagcgtttc gagaagcaat      3720
     tcccgcgggc tacgaaatgc atcacggacg agcactacgt ggacgacatg ctggtgagtg      3780
     tggagactga agaggaggca attcgtctgg cgaaagaagt acggtacgtg catgcaagcg      3840
     gagggttcga gataaggaat tggatatcca attcgttggc ggttgtgaag cagcttcaaa      3900
     cgcaggcaga gcaacaaaaa ggtatcaaca tcggttatga tctggcaacg gaaaaggttc      3960
     tcggtatgtg gtgggacacg gcctccgaca ctttcacctt tcgtctttct ggacatttca      4020
     acgagaaact acaggccggc acgacagcta tcacgaagcg gaacattcta cgcatcctaa      4080
     tgagcatcta tgatcctatg ggcttgcttg ggctgttttt gatgttttta aagattctac      4140
     ttcaagagat atggcgttcc ggaacgggct gggatcagga gctggacaat catttggcgg      4200
     aaaagtggct aacatggcaa cgagtgctac ctgaagttca aaaggtgaga atcaacagat      4260
     gctatcgcaa actcacatca gtcgcagcta gggtagagtt gcatgtcttc tgcgatgcaa      4320
     gcgaaaccgg aatggcggct gttgcctatt tgagattcga ggaaggtggg acaatagaat      4380
     gtgctctggt tgggtcgaaa acacgtgtgg cgcccctgcg gttcatctcg attccaagac      4440
     tggagctgca agcagcattg attggtgccc gattagccgc tacgatcgta aactcacata      4500
     ggttgaatat ttcacgcact gtgtattgga cggactcacg aaacgtattg agctggttgc      4560
     gatcggatca tcggcgttac aatcagtttg tggcgtttcg ggttggcgaa ctgctcgaga      4620
     cgacgaatgt ggaacagtgg cgctggatcg gaacgaaatc gaacgttgca gacgacggga      4680
     cgaagtggac aaaaacacca gatctaacac caacaagtcg ctggttcaac gggccgagtt      4740
     tcctatgggg cccagagtcg aactggccga tgtatggagc acctactacg agcaccgccg      4800
     aggaactacg tcccaacgtg ctacatcaca gtatcgctga tcggctaata gattttaatc      4860
     gcttttccag atggaaaagg cttctgcgmg cagtaggata tgtggtaaga ttcattgcta      4920
     acgtccgtcg tggcatgcgg agagacatcg ttttaggagg accactaacg caggaagaac      4980
     tggcgcaagc tgagtgtatt ctgtttagca gaatacaagc agatgtttat gcacgcgaga      5040
     tatgttgcct gaaaagggag ccaccccgat cgcagccatg gaagagcgga gtggagaaaa      5100
     gcagcccgct ttacaaactt tcgccggtac tcgacgaaca tggagtagtg aggatgcgag      5160
     gacgactagc cggttccttg aatgtcagcg aaacactccg ccaacccatt atccttcccc      5220
     ggaagcatcg cggaacagat ttgctgatac tcgactgcca cgagcgctac aaacactgca      5280
     atcaccgtac ggttgtcagc gagctgcgct cccggtttta tataccccgt cttctgggtg      5340
     agtataaccg ggttcgtaaa tcctgccagc gctgtaagat aaacggtgcc acccctgagc      5400
     caccatcgat gggaaacctt ccacctcaac gagttgcggt cggacagcga gcattctcct      5460
     ttacaggaat agactatttt ggaccccttc tggttgccgt gggaagacga acggaaaaga      5520
     gatggggagt tatatttacc tgtctgacgt cccgagcgat acacctggag atggctcatt      5580
     cactgaccac ggcttcctgt atcatggcga ttcgacgttt tgtcgcaaga cgtggaaaac      5640
     ccttggaagt gattaccgac agaggaacaa atttcgtcgg tgcggcacgg gaactggaag      5700
     aggcacttca agctgttgat gtcgacgcgc tgatgactga atttgctggc ccggatatga      5760
     agtggagctt caacccgccg gctgccccac acttcggcgg atgctgggag cggttggttc      5820
     ggtctgtaaa gaaggtttta ggtcagttca acttaccacg gaacccgacg gatgaagtcc      5880
     tgatgtccgc gttcaccgaa atcgagctta tcatcaattc gagaccactg acatacgtac      5940
     cattggacga cgagatggac accccgctga caccaaacca tctactgctt ggaagctcca      6000
     acggatcgaa gccgcccgtc gtatttaccg agggtggcgc cgtcgtgaaa tcagcttggc      6060
     gagccgctca gcactttgcc gacttatttt ggaagaggtg gatagccgaa tatcttccta      6120
     tgttgacccg tcgatcgaag tggttcgaaa acgtgcggcc aatccaggtg ggtgacacag      6180
     tagtagtagt cgacaactgt ttaccgcgca acagttggcc aaagggtcgt gtgattgagg      6240
     tagttagggc cgaagacggt caagtgagac aggcgagcgt tcgaactact agcgggattt      6300
     acaaacgtcc tgcaacgaaa ctagcgttat tagatatcga gagcaaaata cttaccggtg      6360
     agcagagaga ttagtacgac agcaagcgcg tgcgaaaatt gacaacaaaa acattattga      6420
     cagcgacagg aagtagagtg agatataaag atcggttttc tcactgcagg gggcaa          6476
//
ID   BEL-33_AnFu-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-258
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 736-736 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 258 BP; 87 A; 46 C; 53 G; 72 T; 0 other;
     tgttgtaaac aaactttatt tacaccgacc gccgctgtca ctgcggtttt aatgtcgaca        60
     taaatgtaaa gatcttggca ttcgatcgga acagttagaa ccgtggtgag tttaggtttg       120
     cgaaaaaact tataaaatgg gcgggatcac aaacaacgaa cctcttttgt agaaaatcgg       180
     caaggaataa agcaactaat tttttggttc gcaatagcgt tcctaaagaa agtataaaaa       240
     aagccgcgtt tttctaca                                                     258
//
ID   BEL-33_CQ-I repbase;    DNA;    INV; 3451 BP.
XX
AC   AAWU01003985;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_CQ_;
KW   BEL-33_CQ-LTR; BEL-33_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3451
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 219-219 (2011).
XX
DR   GenBank; AAWU01003985; Positions   56454   53004.
XX
CC   'AAACT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           232..1398
FT                 /product="BEL-33_CQ-I_1p"
FT                 /translation="MFRRSPAALPDHVLEVSPTLPDPILEVFSALSDRVPE
FT                 ANHLLPNTVSEASLALPDPVPEVLPSLSDRVPKSSHVLSNTTSEASLALPG
FT                 PVPGVLPPMSDRVPKSSHVLPNTTSEASLTLPGPVPGVLPPVSESAPEANH
FT                 VLLNTASDASLALPGPVPGARPALTDRVSEALQNLDELAATVDRPENVPPS
FT                 TPAVSSSTPESELLTTKCSDRAAGTVQTAADFSTWTSAPQREVAMNPTAKK
FT                 LADAFRQRHQAEQKLIFVEELLLGMCQPTLAQLTVLYDFLCTAYREQSQHH
FT                 LTIVGIIPDEDLAQQEAEFEKHDANFYKVATVVAELQIEAERTEPVSTSAA
FT                 AKSAVNRQRLQAESWLKQMLRAWESNRVDPLDSNVQLQAPGSQKWS"
FT   CDS           1302..3449
FT                 /product="BEL-33_CQ-I_2p"
FT                 /translation="MAEADAEGLGIEPSGPSGFKCPTPSTRKSEVVLRDCA
FT                 PTVCIPKPEPSLNQLKSLAKQIATKSTCELASDSRIILRSEQPSAVDSRPR
FT                 EDFNMNPIADKFDFLEPTGYLKNVTAEAEPGPVMPAIPSVQVSLRYRSITH
FT                 PDPRRVHSEEPKNLPDFELQQNCTEPVGSFKKDFETVMTVPKYQLQLPSAA
FT                 KAPDKRRHICPSRVTTNSDSKSDAPNEVESRETSAVSSKLDPADRRVSIRV
FT                 SRDVATRVSLKLSLSAMAACSDNQQSEHSNRHRGTKSDVANETRSQRLEIR
FT                 LPTVPANRAFAEVPEDVANSENSERDEESPKSRQRASSCEVHADSIPEQTP
FT                 EAVILDRTVALDPDINRFHSDRDLTNPEDKADFSRVTKDSSSKVTKMIPRS
FT                 RVPGVHNSVKNTHRVHLDIVPETSFRMVKTVAEKNPLMPPVSNAPEKLKQY
FT                 RTMKKTQPRAFGVPPTRCQPRQVCQECAKPQNQTKEVTNQEINHYKDSDPV
FT                 TDDCALQVPNRINGRVTRRDSVTTTPTGINPIKPGGRCRIVHSETASYNPF
FT                 RALQRQETISVSKKQGVVDAPDRTDDLALNGGAERTTPRKIWHAVAVLQLL
FT                 QEPRDTFQNKDKKPATQSKPNDSLYDEKIAQNWLIDRELIATKMLNTSYLY
FT                 RAEANLTPDERETLRPLEEARPTFTILKRPWDPGSTCHTSKPISDPDQTAV
FT                 QERRFRNAVERTQRGE"
XX
SQ   Sequence 3451 BP; 892 A; 1036 C; 884 G; 639 T; 0 other;
     taaatggtcc gtaccgaacc ggattcaaag tgactgcttc ggctgctgcc cgcgtgtccg        60
     atcgtgttgg tttcctgaac accgcgcgcg agtgaaaatc tgtgtgtgtg tgtcacttcg       120
     acataaaaaa gtgacattcc aaaatgtttc agtgacgaat tccgtgccac ggatttcttc       180
     cacctgtctg gccggaccca gttccggaga caaccctggc cttgccgaac catgtttcgg       240
     aggtcacccg cagccttgcc ggaccatgtt ctggaggtat cccccacctt gccagatccc       300
     attctggagg ttttttccgc cttgtcggac cgtgttccgg aggcaaacca ccttctgccg       360
     aataccgttt cggaggcatc cctcgccctg ccggatcctg tcccggaggt tctcccgtcc       420
     ttgtcggacc gtgttccgaa atcaagccac gtcctgtcga ataccacttc ggaggcatcc       480
     ctcgccctgc cgggtcctgt cccgggggtt ctcccgccca tgtcggaccg tgttcctaaa       540
     tcaagccacg tcctgccgaa taccacttcg gaggcatccc tcaccctgcc gggtcctgtc       600
     ccgggggttc tcccgcccgt gtcggagagc gctccggagg caaaccacgt tctgctgaat       660
     accgcttcgg atgcatccct cgccctgccg ggtcctgtcc cgggggctcg ccctgccttg       720
     acagaccgtg tttcggaggc actccagaat ctagacgagc tagcagcgac agtcgaccgc       780
     ccagaaaatg ttccaccatc aacaccagct gtgtcgtcgt cgactccaga aagcgagctc       840
     ttaacgacca aatgcagcga ccgagcagca ggaactgtcc aaactgcggc agatttctcg       900
     acgtggactt ccgcacccca gcgggaagtt gccatgaacc caacagcgaa gaagctggcg       960
     gatgcttttc ggcagcggca ccaggcggaa cagaagctga ttttcgttga ggaactgctt      1020
     ttgggtatgt gccaaccaac gctagcacag ctgacggtgc tgtacgattt tctgtgtaca      1080
     gcgtatcgag agcagagcca gcaccatcta acaatcgtcg gaatcatccc agatgaagac      1140
     cttgctcagc aggaggctga gttcgaaaag cacgacgcaa atttctacaa agttgctact      1200
     gtggtggccg aattgcagat cgaagcagaa agaaccgagc cagtatcaac aagcgcggca      1260
     gccaaaagtg cagtaaaccg acagcgccta caagctgaat catggctgaa gcagatgctg      1320
     agggcctggg aatcgaaccg agtggaccct ctggattcaa atgtccaact ccaagcacca      1380
     ggaagtcaga agtggtcttg agagactgcg cgcctaccgt atgcatccca aagcctgagc      1440
     cgagtttaaa ccagctgaaa tccttggcga agcagatcgc caccaagtcc acctgcgagc      1500
     ttgccagcga ttcccgaata atcctgagat cggaacaacc gagtgcagtc gactcccggc      1560
     cgagggagga tttcaacatg aacccgatcg cggacaagtt cgacttcctc gaaccgaccg      1620
     gctatctcaa gaacgttact gccgaagcag aaccgggccc agtgatgcca gcaatcccct      1680
     ctgtccaagt ttcccttcgc tatcgatcaa ttacacaccc cgatccacgc cgtgtccaca      1740
     gcgaggaacc gaagaacctt ccggatttcg agctccagca aaactgcacc gaaccggtag      1800
     gtagtttcaa gaaggacttt gagacggtga tgaccgttcc gaagtaccag ctacagctgc      1860
     cgtcggcggc aaaggctcca gacaagcgta gacatatctg tcctagccgt gtcaccacaa      1920
     acagcgactc caagtctgac gctcccaacg aagtcgagtc acgggagact tccgcggttt      1980
     caagcaagct agatccagct gaccgccgag tgtctattag agtgtccagg gatgttgcca      2040
     caagggtgag tctcaagttg tcgttgtcag ccatggcagc gtgtagtgac aatcagcaaa      2100
     gcgaacattc gaaccggcac cgaggcacca agtccgatgt agccaacgaa accagatcgc      2160
     agcgtttgga gataaggctg ccgacagtcc cggcgaaccg agcgttcgca gaagttcctg      2220
     aagatgtcgc caacagtgaa aattccgaac gtgacgaaga atctcccaaa agtcgccaac      2280
     gtgcgagttc ctgtgaagtc catgcggaca gcatccccga gcaaacccct gaagctgtga      2340
     ttctggaccg aacggtggca cttgacccgg acatcaaccg tttccattcg gatagggatc      2400
     tgaccaaccc agaagataaa gccgatttca gtcgtgttac gaaggacagc agctccaaag      2460
     tgacgaagat gatcccccgc agcagagtgc ctggagtgca caattccgtc aagaataccc      2520
     accgcgtcca cctggatatc gttcccgaaa ccagctttcg gatggtgaaa accgttgcgg      2580
     aaaagaaccc cctgatgccg ccagtgtcaa acgctccgga gaaactcaag cagtaccgca      2640
     ccatgaaaaa aacccaacct cgcgcgtttg gtgtccctcc taccagatgc cagccacgcc      2700
     aagtatgcca agaatgtgcc aagccccaga accagaccaa ggaagtgacc aaccaagaga      2760
     tcaaccacta caaggacagc gacccagtca ccgatgattg tgcgttgcaa gtacccaatc      2820
     gtatcaacgg cagagtgaca cgccgcgact cagtaacaac cacgcctact ggcattaacc      2880
     cgatcaagcc tggcggacgg tgtaggatcg tccattccga aacagcgagc tacaacccgt      2940
     ttcgtgcgct gcaacgacaa gaaacgatca gtgtctccaa gaagcaaggc gtcgtcgatg      3000
     caccggaccg aaccgacgat ctggcactca acggaggtgc tgaaagaacg acaccacgga      3060
     agatctggca tgctgtggca gtgctgcagt tgctccaaga acctcgagat actttccaga      3120
     acaaggacaa gaaacctgcc acccagagta agcccaacga ttcactctac gacgaaaaga      3180
     ttgcgcagaa ttggctcatc gaccgagagt tgattgcaac caagatgctg aacacaagct      3240
     acctgtaccg cgccgaagca aaccttaccc cagatgaacg cgaaactcta cgaccgcttg      3300
     aagaagccag accaacattc acgatcctga agcggccctg ggacccgggg tcgacatgcc      3360
     acacgtcgaa gccaatcagc gacccagacc aaaccgcggt acaagagcga agatttagaa      3420
     atgctgttga gaggactcaa cggggggagt a                                     3451
//
ID   BEL-33_CQ-LTR repbase;    DNA;    INV; 336 BP.
XX
AC   AAWU01003985;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_CQ_;
KW   BEL-33_CQ-I; BEL-33_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-336
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 220-220 (2011).
XX
DR   GenBank; AAWU01003985; Positions   53003   52668.
XX
SQ   Sequence 336 BP; 99 A; 101 C; 86 G; 50 T; 0 other;
     tgttcggtct ggccgaacac ttgccccacc cgtgcggcga aactgactac gccgctgcgc        60
     aacggcagct gtcaagctca ccgacagcaa caacggcccg cttactgcgc gcagaccagt       120
     cccgaaccat ccatcgaacg cgtcgcacgt gcagccaaaa cacagcagag cagaagcaga       180
     gacagaagag gaagacgaga aagtgaagtg ataagaggag gagaataaaa gaaaattaga       240
     aaatctaaac cctcccagtg tttgcttccc cggacaatct tccgccgcga tacagtccac       300
     ttccgcgagt ttgaagggcc accgttggtc cgaaca                                 336
//
ID   BEL-33_DTa-I repbase;    DNA;    INV; 5554 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5554
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5700-5700 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..5458
FT                 /product="BEL-33_DTa-I_1p"
FT                 /translation="MAETFEELIAEQSALIDSVRRMLENFRKAGTNKSEAH
FT                 METRLESLANIRTEFRENHRKLVRADDELVQHDYMEADLEGKFQEAYIDSV
FT                 AQIRTDLNETKDRLLASTGINNLDLQDGHRNAPSSGFIAPDQTTIDEVKLP
FT                 TVKLPIFSGEFVDWPAFKEIFEARVHNSPRLTDLHRFHYLKDSLSGEAIKD
FT                 IQHLTLIETNYPVAWKMLLNLYDNKRVLFQHYMQVLEQQPMVQSDDPVSLK
FT                 GFLQTCRSCIKSLEKVGVNLFDQSHVIVYLVTKKLPAELRLDWEKSLATSQ
FT                 ELPTFEQLSAHLDGQYRTMLTSASGERTTLSNKDRKGASGSSEKRRDVKSS
FT                 FVARSEQKCAICCKNGHSVQDCKVFESMHLTARREAVMKQRLCFNCLGNNH
FT                 NSRRCKLKNNCSICADRHHTLIHLDRVRLTKEPNEQVQQVTSNAISGTSSA
FT                 TGTSYEVLLPTALVRIQSAEGFILQFRAFLDQGSQASFVSENVVQKLGLTR
FT                 QKAYIKVNGLANARVTEASSSVRLCFGSRFEPQARYSVTAYVLPKVSKRMP
FT                 NRRLSVEKWSQFEQLCLADPNYFVPQGVDILLGSDIYDELMLSEIHRGPDG
FT                 WPIAQSTRLGFIISGKVKEPNTRVTVHTVTVIKDESSAELEGLLRRFWEFE
FT                 QLDEAAEVLSKEDLWCEEHFVNTHVRLPSGKYQVRLPFLSTLDPQLVIGSS
FT                 RQGALKRLCHLDKRLRNDANLKEVYSKTIKEYLELGQMEKVVTQAGQTEET
FT                 GYPGGATHCYLPHHPVIKESSTTTKVRVVFDGSMKTSNGKSLNEILAIGPK
FT                 LHMELPAILINWRAIRFAFLADVEKMYRCINIHKKDAQFQRILWKPDNTVQ
FT                 VEEYACCTVMFGTSCAPYLAIRVMQQLAEDEEHNYPLAANVLKRQMYVDDV
FT                 LSGANSISDAKELQAQVRGMMRSGSFELRKWASNCPQLLEGIPLEHRETKE
FT                 PLNFQGDETIRALGLYWKPNEDEFRFQLNFDLPAGTPTKRKMLSTIARLFD
FT                 PMGWLSPITVVGKRMVQALWKTKLSWDDHVPLKLQKEWQKFIQELPNLSKI
FT                 HIPRYIAWGMSKGTPQLHIFCDASGYAYGAAAYLRIPIGENAFHTELILAK
FT                 CKVAPIKPQLTIPRAELCAAVIAAKIFKYLKDHLTIHIDFAETVFWSDSMI
FT                 VLSWIQGGAARWKVFVANRISKILELCDGKQWRHIASEDNPADLLSRGISV
FT                 TKLASCQLWWNGPPWLRFKDCEWPSTKLDPGTDIRVTSEQKQMHCNAISVE
FT                 KENGSDILGRFSSYTVLIRILAYVHRFIRNCKISKSARIVDSLTVSELSEG
FT                 FLCAVRLCQKEGFAGDWKLLSEGKMLHKQSPLLPLNPYFDESERIIRLGGR
FT                 LRDALLPMAEKHPYILPYQHSFTSLVIRYSHVSTLHGGAALTLNHIRKKCW
FT                 IINGRNAVRREIHKCIVCYKFNPNITCQKMGNLPPARIRPQKAFTSVGIDY
FT                 AGPFNISPSKGRGRTSVKGYIAVFVCLVTKAIHLEPVGDLTSDAFLGALHR
FT                 FIGRRGKCVHIYSDCGTNFVGANRKLQADKLAYKLYIEKTILGRLTDDGIT
FT                 WHFNPPSAPHFGGLWEAGVKSMKHHLKRTVGDRTLTYEELATVLAQIEACL
FT                 NSRPLCPLSNDPEDLMVLTPGHFLVGDALLAMPTEQADKLSATERWRNCQH
FT                 LVQQFWKRWSSDYLSRLQRRPKWLENRRNLQAGDLVLIKDERLPSNLWALG
FT                 RITETHCGQDGLVRVVKLQSQSGIIKRPVAKLCPLPIQDNWLNRDLDPPQQ
FT                 F"
XX
SQ   Sequence 5554 BP; 1627 A; 1108 C; 1371 G; 1448 T; 0 other;
     ttttggtgcc gaaacccggg aagacttctc ttggactgag tggaatatct gtgggtcact        60
     acttggacta cgctggagcg cgaagaggtt attgtagaag gttagtgcac tgtgttttgt       120
     tgtgagaaag agggtcaagg tcatggctga gacatttgag gaattaattg cggagcaatc       180
     agctttgatt gattctgtac gccgcatgtt agagaacttt cggaaagctg gcactaataa       240
     gtcggaagca catatggaga ctagattaga atctctggcc aatattcgca cggagttccg       300
     agagaaccat cgaaaattgg tgcgtgcgga tgacgagttg gttcagcacg attatatgga       360
     ggcagacctt gaaggaaagt tccaagaagc gtatattgat agtgtggcgc agattagaac       420
     tgacctaaat gagactaagg atcgacttct tgcgtcaaca ggaattaaca atcttgattt       480
     gcaggatggg catcgcaacg cgccatcgtc agggtttata gcaccagacc aaaccacgat       540
     cgatgaggtt aaacttccaa cggttaaatt gcctatattt agcggtgaat ttgtagattg       600
     gccggcattt aaggaaatat ttgaagcgcg agttcataat agccctagac tcactgatct       660
     acatcgattc cattacctca aagattcttt gtcaggggaa gccatcaaag atattcaaca       720
     tctaacactg atcgaaacaa attatcctgt agcttggaaa atgttattaa acttatatga       780
     taataagcgt gttctgtttc aacattatat gcaggtatta gagcaacagc ccatggtgca       840
     gagcgatgac cctgtttcgc ttaaggggtt tttacaaact tgtcgttctt gtattaaatc       900
     attggaaaag gttggcgtta accttttcga tcaaagtcat gtcatagttt acttggtgac       960
     gaagaaacta cctgcggagc tgcggttgga ctgggaaaaa tccctggcta cttcacagga      1020
     gttaccaaca ttcgaacaat tatccgcgca tctcgatgga caatacagga ctatgcttac      1080
     gtccgccagt ggcgagagga caacattgtc taacaaggat cgaaagggag catcgggatc      1140
     gtctgagaag cgccgagatg tgaaatcctc ctttgtcgcc cgatcggagc agaaatgtgc      1200
     catatgttgc aagaacggtc attctgttca agattgcaag gttttcgaaa gcatgcatct      1260
     aacagcacgg agggaagctg ttatgaagca acgtttgtgc ttcaactgtt tggggaataa      1320
     ccataactca cgaagatgta aacttaaaaa caattgttcg atttgcgcag atcggcatca      1380
     cacgctcata catttggatc gggttcggct gactaaagag ccaaatgagc aggttcaaca      1440
     agttacttcc aacgcaatta gcgggacttc gagtgcaact gggactagtt atgaagtgct      1500
     attgccaaca gcgctagttc ggatccagtc cgcagaaggg ttcatactac agttccgagc      1560
     atttctggac caaggatcgc aagcttcgtt tgtatcggaa aacgtagttc agaagttggg      1620
     actaactcgt caaaaggcat acattaaggt taatggactg gccaacgcac gagttaccga      1680
     agcgtcttct tccgttcgtt tatgttttgg atcaaggttt gagccacagg caaggtatag      1740
     tgtgactgcg tatgtgttac caaaggtgag taagcgcatg ccaaatcgtc gcttatctgt      1800
     ggaaaaatgg tctcaatttg aacagctttg cctggctgat cctaattatt ttgttccaca      1860
     aggtgtggac atattgttgg ggagtgatat ctatgatgaa ttaatgctaa gtgaaataca      1920
     tcgcggaccg gatggctggc ctattgctca aagcacacga cttggattta ttatatcagg      1980
     aaaagttaag gaacccaaca caagggtcac ggtgcatacg gtgacagtaa tcaaggacga      2040
     atcatctgcg gaattagaag gattacttcg cagattctgg gaatttgagc agttggatga      2100
     ggcagcagaa gttttgtcga aggaagattt gtggtgtgag gaacattttg ttaatacaca      2160
     tgtgcggtta ccttcaggga aatatcaagt gcgattgcca tttctatcca ctttggatcc      2220
     ccagttagta attgggtcgt cgcgtcaagg tgctttgaaa cggttgtgcc atttggacaa      2280
     gcgtttacgc aacgatgcca acctgaagga ggtgtattcc aaaacaataa aggaatattt      2340
     ggagttgggg caaatggaaa aggttgttac acaagctggg caaacggaag aaacaggcta      2400
     cccgggggga gccacacatt gttatttacc tcaccaccca gtaatcaagg aatcgtcaac      2460
     gactaccaag gtgcgcgtcg tctttgacgg atcgatgaag acgagcaatg ggaaatcttt      2520
     gaatgaaatc ttagcaatag ggcccaaact acacatggag ctcccagcaa tactgataaa      2580
     ctggagagca ataaggtttg cattccttgc ggacgtggaa aaaatgtata gatgtattaa      2640
     tatacataag aaggatgctc aatttcaaag aattttgtgg aaaccggaca acactgtcca      2700
     ggtagaggaa tacgcctgct gcacggtcat gtttggcacg agctgtgctc cgtatctggc      2760
     cattagagtt atgcagcagt tagccgaaga tgaagagcat aactacccgc tggcagccaa      2820
     tgtacttaaa cgtcagatgt acgtggacga cgttttatct ggagcaaata gtatttccga      2880
     tgcaaaggaa ctgcaagctc aagttagagg aatgatgaga agcggatctt ttgagttgcg      2940
     aaaatgggcc agcaactgtc ctcaactgtt agaaggaata cctctagaac atcgggaaac      3000
     caaagagcct ctaaattttc aaggtgacga gacgattaga gcattaggat tatattggaa      3060
     acccaatgaa gatgagtttc gatttcaact taattttgat ctcccagcag gtacaccaac      3120
     aaagagaaag atgctttcga cgattgcgag gttattcgac ccaatgggat ggttgagccc      3180
     aatcaccgtt gttggaaagc gaatggtgca agccctgtgg aagacaaaac ttagttggga      3240
     cgaccacgta ccattgaaac ttcaaaagga atggcagaaa ttcattcagg agctgccaaa      3300
     cttgtctaag attcatatac cacgctacat tgcttgggga atgtcaaagg gaactccaca      3360
     gttacacata ttctgcgacg cgtcaggata cgcgtacggt gcggcggctt acttacgaat      3420
     tccgatagga gagaacgcct ttcatacgga actaatttta gcgaaatgca aggtagcgcc      3480
     tatcaagccg cagcttacga ttccaagagc ggaattgtgt gcagcagtca ttgctgcgaa      3540
     aatatttaag tatttaaagg atcacttaac tattcatatt gattttgcag agactgtctt      3600
     ttggtcagat tcgatgatcg ttttgagctg gatccaagga ggtgctgcga ggtggaaggt      3660
     tttcgttgcc aaccgcatca gcaaaatttt ggagctatgc gatgggaaac aatggcgaca      3720
     tatagcatct gaggataatc cagccgatct tctaagtcgg ggaatcagtg ttactaaatt      3780
     agcatcgtgc caattatggt ggaatggacc gccgtggctg agatttaaag attgtgagtg      3840
     gccatcgaca aaactagatc ctggaaccga tatccgagtc accagcgaac agaagcagat      3900
     gcactgcaac gctatttctg tggagaaaga gaacggatcc gatatattag gaaggttttc      3960
     atcgtacaca gtgctcattc gcatcctggc atatgttcat cgatttataa ggaattgcaa      4020
     gatatcgaaa tctgctcgaa tagtagattc tctcacggta agcgagcttt ctgaagggtt      4080
     tttgtgtgcg gttcgtttgt gccaaaagga aggctttgca ggcgattgga aactattgtc      4140
     ggaagggaaa atgttacata agcaaagtcc gctgttacca ctcaatcctt attttgatga      4200
     atcggaaaga atcattcgcc ttggaggacg cttgagggac gcactgctgc cgatggcgga      4260
     aaaacaccca tacattctac cttatcagca ttcatttaca agcttggtca ttcgttatag      4320
     ccatgtcagt accttacatg gaggtgcggc ccttacactc aatcatatca ggaaaaaatg      4380
     ttggatcatc aacggacgta acgccgtacg aagagaaatc cataaatgta ttgtttgcta      4440
     taaatttaac cctaatatta catgccaaaa gatgggtaat cttccaccgg ccaggattcg      4500
     gccacagaag gcttttacgt cagttgggat tgactacgcg ggaccgttca acatatcgcc      4560
     atctaaagga agaggacgga cttcggttaa aggctatata gcggtttttg tatgtcttgt      4620
     aacaaaggct atccacctag aaccagtggg ggatttgaca tcggacgcat ttcttggagc      4680
     acttcaccga ttcattggcc gacgtggaaa atgtgttcat atttatagcg actgtggcac      4740
     aaatttcgtc ggggcaaatc ggaagctgca agcagacaag ttggcataca agttgtacat      4800
     cgaaaaaacg attctaggta gactcacaga tgacgggatt acgtggcatt ttaaccctcc      4860
     ctccgctcca cattttggag gtctatggga ggcgggcgtt aagtcaatga aacaccactt      4920
     aaaaaggaca gttggtgatc gtacgctcac atacgaggaa ttggccaccg tattagctca      4980
     aattgaagcg tgcttaaact ctcgtccgtt gtgcccgcta agcaatgacc cggaagattt      5040
     gatggtccta actccaggcc atttcttagt tggggatgct ctactcgcta tgccaacaga      5100
     acaagccgat aaactaagtg ccaccgagag atggaggaac tgtcagcact tagttcagca      5160
     attttggaag cgttggtcct cggattatct atcacgcttg cagcggagac cgaaatggtt      5220
     agaaaatagg cgtaacttgc aggctggcga tctagtactc attaaagatg aacgtttgcc      5280
     gtctaatcta tgggctcttg gtcgaattac tgaaactcat tgcggccaag acggtttggt      5340
     tcgagtggtt aaactccagt ctcagagtgg tattattaaa cggccagtag caaaattgtg      5400
     cccattaccc atacaagata attggttaaa tcgtgacctt gaccctccac aacaattcta      5460
     agttgcatta tctttttagc gtccaacctc caacctaccg aagacgttga agaagcagtt      5520
     aataatattc taataatatc attagggggg agaa                                  5554
//
ID   BEL-33_DTa-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-454
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5625-5625 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 454 BP; 121 A; 111 C; 88 G; 134 T; 0 other;
     tgtttggact gcatattgtc aacacgagaa cttgcagtgt agctgacgtc acactgtaag        60
     ctctctagtt acagacattc ttctttgccc tttattcgta gtcttgttcg aaagatcgaa       120
     ccatatcaca gttaatttgg tcatatgcac atacataatt tggagagctg cagcttcggt       180
     aaatgaaatg taaaaccgac aatttagtct gcgagcgaga gtcaatacat tcagaagcac       240
     cctctgtgct cttatctttt atactttttt acataaccta attaaatcca acgcacattt       300
     ttggaacctt tcgtcttctt atttgggacc ctgggcaaca gaccgctact ccgaggaact       360
     tctaacgccg ccacaggtgg acaatcactc tgtgcgccgc atcatatttt gctgaagatt       420
     ggggctccgt cggtacgcag ccacagccaa caca                                   454
//
ID   BEL-33_SpEx-I repbase;    DNA;    INV; 5981 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5981
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6911-6911 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           329..5533
FT                 /product="BEL-33_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MQVHIQLQDELMNNLIKAERNFKKTPKDRMKRQYLET
FT                 RLEVLEQQYKEFKEQHKIILSKASKEKKETYFTEGFYENFEELYVQYKTSL
FT                 REALQQFMPPPLSQVPTAIMTSTTTDNNFNDIKLPRITLPKFEGKYEEWQT
FT                 FYDMFSSLIHKNKSITAVQKLHYLKGNLAGEALNLLRNYSTTEANYEEAWK
FT                 QLVKRYDNKRYNCNAILKKMFSLKKINNESAYAIKLLLDTTSTCLKSLESI
FT                 GLSTETWDVIIVYITVAKLDNESIKQWEQKLSVSSDDFPTWPQLKDYLEYR
FT                 FRSLEMIDDANAQRSTQAAKSVQKPKSFHASVENKPRTKEVECAMCKENHY
FT                 VYHCKRFGLMTAKERQNFVQNSGLCFNCLAPTHSVNKCRQSLSCRKCGRRH
FT                 HTLLHFERDNNEATKSMSEVTASSSQQHEKSSTSQGDTRITTTFTRQELQP
FT                 TRVLLATARVKVFNSNGFSQIIRALIDQGSQASLVTEATVQLLGLTRIPVN
FT                 GFVSGLGDGHTRIKHRVSLQIQSRYNPANIIQVNAYVMNSLTSMLPTTNLS
FT                 SHEWVEIKKLPLADHTYATPSKVDILLGAEVYSEILLDGMIRQSQGTLLAQ
FT                 NTVLGWIISGKVSNGSISAAKDNLTSLHVCLEENDLLKKFWEMENEPNMLQ
FT                 KEMTESEKECENLFNSTTTRDDEGRFIVRLSFATDNPKCQYGNSKEKAIKM
FT                 LESLERKLTRDPKLRIEYNKVFEEYLSLNHMTKLNEREIENTRAVYLPHHA
FT                 VVREDKDTTKVRVVFNASSKGNNNVSLNDDLLVGPKLQQDLRHILMRWRSH
FT                 KICLVADITKFYRMVRVADKDTDFQRIVWRFDPSEPIQHYKLTRLTFGTAC
FT                 APYLAVKALQKLAELEGHKYPIAAKITKTDYYMDDLMTGSETVEEALQIHD
FT                 EMNNLMKSGGFELQKWNSNNNIFLEKIGKKEEQESDQKTPIKFNDLIKVLG
FT                 VGWCRQSDNFEYVLNLPQTEEPITKRHILSVIARLYDPLGWIAPVVVIAKI
FT                 FIQKLWKSSLDWDECLTKDLLEQWSVYKSDLKDLKELTIPRWLNMTRDSKT
FT                 ELHVFSDASKSAYAAAVYIRVMDEFNNVHVHLVTAKTKVAPIDKEISIPRL
FT                 ELCGATLAAKLIFEVSQIMEIPKEHLHGWTDSTVVLAWLKGGSSRWTTFVS
FT                 NRVSTVLNILDYEQWGHVSTDANPADCASRGLQPRDLANHSLWWRGPEWLS
FT                 QTDIQRNETNIIDTHEEEKIKSLIVSSNIDELCIWTRFSSLSKLLKVISYC
FT                 RRILNLKLPQNGRPSLPPFITTTELNETLLSVIKLIQGREFSVEINQLNTK
FT                 GCVPKKCPIRTLSPFLDQKGILRVGGRITQADVCYDTRHPIIMPAKNHFSM
FT                 LLIRDAHIKTLHGGPQLMLNILRTKYWILRVKEKVKKCYRECVVCLRYSPK
FT                 KRIPFMGLLPEARVKPSKPFKSTGVDYCGPVNIRFSPGRGAKSYKGYICLF
FT                 VCMVTRAIHLEAVTDLTAKGFIAAFKRFTARRGHCQDLFSDNGTNFVGADR
FT                 ELQDMFKAGKSTVPKEIAELLTLERTTWHFIPPHSPNFGGLWEAGVRSTKT
FT                 HLRKVVGNATLTYEELATVLAQVEACLNSRPITQLSDDPNDPLPLTPGHFL
FT                 VGEPILNIVDQDCSNCNVLGLDRWRLTKKIVNDFWNRWSKEYLVSLSQRYK
FT                 WNSKGSEPKVGDVVILKEDNIPPAKWLLGKIIQTHTGPDNITRVVTVKCKT
FT                 GQLKRPLSKICVITK"
XX
SQ   Sequence 5981 BP; 2028 A; 997 C; 1245 G; 1711 T; 0 other;
     tatggtccat aacgagccgg attgtgttta tgtatatcga gtcaaaccgc aagccgtgag        60
     aacaaaaaaa aacgcattct ttagataagg attcgcccgg tgatcggaaa aagtgtttaa       120
     ttctaacgtc ttgcaaataa ttaggagtta ttacttgact tttaagtgaa tagaacattt       180
     tgtgaacaaa tttaaacaag tgtggccttt taattacaag acattgagtg agtgaattac       240
     tagacttttg gaggtattaa aaggtcaaga aatttatagt gagtgtgtgt gggattacga       300
     taactacagt ccttacaaac caataacaat gcaggtgcat attcagttgc aagatgagtt       360
     aatgaacaac ttaataaaag ccgagcggaa ctttaagaaa acgcccaaag ataggatgaa       420
     aagacaatat ttagaaacac gattggaggt acttgaacaa cagtataaag aatttaaaga       480
     gcaacataaa attatccttt caaaggcttc gaaggagaag aaagaaacat atttcaccga       540
     gggcttttac gagaattttg aggaactgta cgtgcaatac aaaactagtt taagagaagc       600
     tttgcagcag tttatgccac cgccattgtc tcaagtgcca accgccatta tgacgtctac       660
     tactaccgat aataacttta atgatattaa gctaccgcgt atcacattac ctaaatttga       720
     aggaaaatac gaagaatggc aaacattcta tgatatgttt tcgtcattaa ttcataagaa       780
     caaatccata acagctgttc aaaaattaca ttatttaaaa ggtaatttag cgggtgaagc       840
     tttaaattta ttacgtaatt attcaacgac tgaagcaaat tatgaggaag catggaaaca       900
     actagtaaaa cggtatgata acaagcgata caattgcaac gctattctaa aaaagatgtt       960
     ttctcttaag aaaataaata atgagtcggc ctatgcaata aaactattac ttgacaccac      1020
     atcaacgtgt ttaaagtcac tcgagagtat aggccttagc acggaaacat gggatgtaat      1080
     tattgtttac ataaccgttg caaagttaga caacgaatct ataaaacagt gggaacaaaa      1140
     acttagtgtt tcaagcgatg attttcctac ctggccacaa ttgaaagatt atttggagta      1200
     caggtttagg tcattagaga tgattgatga tgccaacgct caacgatcaa cacaagcagc      1260
     gaagtctgta caaaagccaa aatcatttca cgcgtctgtg gaaaacaaac ctagaacaaa      1320
     agaagttgag tgtgccatgt gtaaagagaa tcattacgta tatcattgta aacggtttgg      1380
     tttaatgacg gcgaaggaaa gacaaaactt tgtgcaaaac agcgggttgt gtttcaactg      1440
     cttggctccc acacattccg tgaacaaatg ccgtcaatca ttgagctgca gaaaatgtgg      1500
     tagaagacac catactttgc tacacttcga gagagacaac aacgaggcaa ccaaatctat      1560
     gagtgaggta acagcgtcat cgagccagca acacgagaag tcgagcacat cacaaggtga      1620
     cacacgcatt actacgacat ttactaggca ggagctgcag cccacgcgag tgctgcttgc      1680
     tacggccaga gtcaaggtat ttaattcaaa tggtttttca caaattatac gagctttaat      1740
     agaccagggg tctcaagcct ctttagttac cgaggctact gttcaattgc ttggcttaac      1800
     tagaattcct gtaaatggtt ttgtgtcagg gctaggcgat ggtcatacga gaattaaaca      1860
     cagagtttca cttcaaatac aatcacgcta taatccagcc aacataatcc aagttaatgc      1920
     ttatgttatg aattctttga cgtctatgct gcccactacc aatctgagtt ctcatgagtg      1980
     ggttgaaata aaaaaattac ctttagctga tcatacatat gcaacaccaa gcaaggtcga      2040
     cattttgcta ggcgcagaag tgtatagtga aatattgctt gatggtatga ttaggcaatc      2100
     acaaggtact ttgttagcac aaaatacagt tttagggtgg attatttcag gaaaagtttc      2160
     aaatggatcc atctcggccg caaaagataa tcttaccagt ttgcatgtat gtttggaaga      2220
     gaatgatttg ctgaagaaat tttgggaaat ggaaaacgaa cctaatatgc tgcaaaaaga      2280
     gatgacagaa agtgagaagg aatgtgagaa tttatttaat tcaactacta ctagagatga      2340
     tgaaggaaga tttatagtaa gattatcatt tgcaacagat aatccgaagt gccagtatgg      2400
     taattcaaag gagaaagcta tcaagatgtt ggagagttta gaaagaaaat taacaagaga      2460
     tcctaaattg agaatagagt ataacaaagt gtttgaagaa tacctaagtt taaatcacat      2520
     gacaaagcta aatgagagag agatagagaa tacacgagct gtttatcttc ctcaccatgc      2580
     agtggtgaga gaagacaagg atacaacaaa ggtgagagtg gttttcaatg cgtcaagcaa      2640
     gggaaacaac aatgtctcct taaatgatga tcttctggtt gggccaaagc tgcagcaaga      2700
     cctgaggcac atactaatga gatggagaag tcataaaata tgtttagttg cagatattac      2760
     aaaattttac cgaatggtcc gagtcgccga taaagacact gatttccaaa gaatcgtatg      2820
     gaggtttgat ccatctgagc ccatacagca ttataagcta accaggttaa cgtttgggac      2880
     agcatgtgca ccatacttgg cagttaaagc gttacaaaaa ctagcagagc ttgagggaca      2940
     caagtacccg atagctgcaa aaataacaaa gacggactat tacatggatg atttgatgac      3000
     tggaagtgaa acagtagaag aagcattaca aatacacgat gaaatgaata acttaatgaa      3060
     atcaggtggg ttcgaacttc aaaagtggaa cagtaacaat aacatatttc tggaaaaaat      3120
     tggtaaaaaa gaagagcaag agagtgacca gaaaacgcct atcaagttta atgatttaat      3180
     caaggttctt ggagtcggtt ggtgtcgaca atctgataac tttgaatatg tacttaactt      3240
     acctcaaacc gaagagccga tcactaaaag acacattctg tctgttatag ccagactgta      3300
     tgacccatta ggttggattg ccccagtggt agtaattgcc aaaatattca ttcaaaaact      3360
     ttggaaatca agccttgatt gggatgaatg cttaaccaaa gacctactcg aacagtggtc      3420
     ggtgtataag agcgatctta aggatttaaa ggaacttacc attccgagat ggctaaacat      3480
     gacgcgagat tctaaaactg agctacatgt tttttctgat gcttcaaaat cagcatatgc      3540
     agctgcagtt tacataagag ttatggatga gttcaataat gttcatgtac atttagtcac      3600
     tgcaaagacg aaggttgcgc cgattgataa ggaaatttca attcccagat tagaactgtg      3660
     tggcgcaact ttagctgcta aactaatttt tgaagtgtcc cagattatgg aaatacctaa      3720
     ggagcattta catgggtgga cagactccac ggttgtgttg gcatggctca aaggtggttc      3780
     aagcagatgg actacttttg taagtaaccg agtgtccaca gtattaaaca ttttagatta      3840
     tgagcagtgg ggtcatgttt ctactgatgc gaaccctgct gattgtgcat cgcgaggctt      3900
     gcaaccacga gatttagcaa accattcatt gtggtggaga ggaccggagt ggctgtcaca      3960
     aacagacata caaaggaatg agacaaacat tattgatacc catgaagagg aaaaaatcaa      4020
     atctcttata gtttcatcta atattgacga gctatgtata tggacaaggt tttcatcatt      4080
     gtcaaaatta ttaaaggtaa tatcatactg tagaagaata ctgaatttaa agttacctca      4140
     aaatggacga ccgagtttac ctccatttat tactacaact gaactaaatg aaactttatt      4200
     gtcagttatt aagttaattc aaggacgcga gttttcagtt gagataaatc aactaaacac      4260
     caagggatgt gttccgaaaa aatgccctat acgaactctt tctccgtttt tagatcaaaa      4320
     gggaatatta agagtaggtg gtcgtataac acaagctgat gtgtgttatg atacgagaca      4380
     tccaataatt atgcctgcta aaaatcattt tagcatgctt ctaattcgtg acgctcatat      4440
     caaaacttta cacggaggtc cacaacttat gttgaacatt ttgcgaacaa aatattggat      4500
     tttaagagta aaggaaaagg ttaaaaaatg ttatcgagaa tgtgtcgttt gtcttagata      4560
     ctccccgaag aagcgtatac cattcatggg tcttcttcca gaggcaagag tcaaacccag      4620
     taaacccttc aagtctacag gagtggatta ctgtggtccg gtgaacatca ggttctcacc      4680
     aggcagagga gcgaagtcat acaagggcta catttgtctt tttgtgtgca tggtaacaag      4740
     agcaatacat ttagaagcgg ttactgactt gactgctaaa ggtttcatag cagcgttcaa      4800
     gcgatttacg gctagaagag gccactgtca agatttgttt agcgacaatg gcacaaactt      4860
     tgttggcgct gacagagaat tgcaggatat gttcaaggcc ggcaaatcaa ctgttcctaa      4920
     ggagatcgcg gagttgctga cgttagagag aacgacatgg cacttcatac caccacattc      4980
     accaaatttc ggagggttgt gggaggctgg cgttcgtagt accaaaactc atttgcgaaa      5040
     ggtagtagga aacgccactc tcacgtatga ggaattggcc acagttttgg cacaagtgga      5100
     agcgtgctta aattcacgac ctataactca acttagtgac gatccaaatg acccactccc      5160
     cttgacacca ggccattttt tagtaggcga accaatttta aatatagtgg atcaagattg      5220
     ttctaactgt aatgtattag gcttagacag atggcgactt acaaaaaaaa ttgttaatga      5280
     tttctggaat aggtggtcaa aagaatatct tgtaagtctc agtcagagat ataagtggaa      5340
     ctcaaaaggt tctgaaccga aagttggaga tgttgttata ttaaaagagg acaacattcc      5400
     tcctgcaaaa tggttacttg gtaaaattat acagacacat acaggccctg acaatataac      5460
     tcgtgtcgtg acagttaaat gtaaaactgg acaattgaaa cgtccactta gtaaaatttg      5520
     tgtcataaca aagtaaaatg tatttttttt tttggttaga tttactaacc ttccttttat      5580
     gtacttggtt aagttaagtt gaagttatat ttttacataa gtacctttac cctttttttg      5640
     ttggtttata tacattttgc aagactttta ttacttgttt aattttttta tacttatatt      5700
     tgtttgattg tgagttgtat acttttagaa gattttatat cttgttattt tgtgttatgt      5760
     acaaggtatt gtaaggtgtt ggtttatgta ctttgggcat ttattgctcg ttgatttgtt      5820
     taccttttac ttattgagtt agtacctata gtgtgtcgag tttctaacca agaatcatgt      5880
     tagaacacta ttaagtttaa gtttagttat actgagttta tctatgttga tttgttatta      5940
     acattttgta attaaagaac tatgttcttt ggtgggcgga a                          5981
//
ID   BEL-33_SpEx-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-33_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-173
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6940-6940 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 173 BP; 65 A; 29 C; 24 G; 55 T; 0 other;
     tgtccaaaga gaattgtact cgaactataa gaagatatat ttatgtacct atgtgtatac        60
     agtccacact gcgtaaactt tttttagttc aaatataaga ggtgtaagga aatcacgtcg       120
     ttttagttaa aatctaatcc cacaatcaaa aaacaacttt attcgcttaa aca              173
//
ID   BEL-34_AA-I repbase;    DNA;    INV; 6681 BP.
XX
AC   AAGE02019757;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_AA_;
KW   BEL-34_AA-LTR; BEL-34_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6681
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019757; Positions   34878   28198.
XX
CC   Positions [5771-6328] - Integrase core
CC   'CTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..6679
FT                 /product="BEL-34_AA-I_1p"
FT                 /translation="MNRKSIVRQTQLRTQDGGEGTPNPQNDVDLRENASVM
FT                 SSEANFEASTIDDERANERDCGVCNRPNKAEWFMVQCGDCGKWYHFSCAGV
FT                 THKTVHSKPFSCASCVPRSIPAATSIAERTSTSSSRKAKLVRDMQRLEEER
FT                 ALEEKIQQATLKKLEREREYIARKYEILEQQDEADMSSVHSGRSSRTSRVK
FT                 EWLLDQNNAVEVPRAVTDDPVVEDGENSHVGTLVNRDNVQITSTPLKTGFC
FT                 AIGTNQKGGESRPASSIGGVADSDMEKTFGSITINGNGRPTKAGVTENVLP
FT                 LVDVQSLADLLENTSPKVPEKGVRPKNPIPFYEKWRRETEDLRKEHILRQQ
FT                 QHENEIEVRRKRELELVGKLNQLKGCKEEQFELQRRREADLLRQLQLREEE
FT                 GAEFKKQQQKELNERDEELQRLRKIEQAFRVMQMSSQQKQIDANGSDGASD
FT                 DAMRPQGCSQAGYANNIPIQTTPLVSVPHLSTVSMDSIDTPSNTPHHRNEL
FT                 DESSMATPMGGRSQYSIHTNQSLPMFNHFPADQHKPLSNLPTFPPFVTPQY
FT                 EPWPPFVHPRPSVANYGPLPVQFGPSPQQVAARQVISKELPPFTGDPIEWP
FT                 MFICNYMHSTSACGYTDSENLLRLQRCLKGTAKDAVSSLLLHPSSVPQIIS
FT                 TLQTLYGRPEQIVNNMVSKVRSAPAPKADRLDTWVTFGLMVQNLCGHLRAV
FT                 GLENHLSNPILLQELVEKLPPTVKFNWALYQQSLPTVDLKSFGDYMEKVAT
FT                 ATSSVTTSLINQPMTSRDERARGKDKAFVNAHAVSTTEKADVGESCQEHQH
FT                 YQQHISAKKESSSCPACDGGGHQVANCATFRKLSVDSRWKEVKEKRLCGRC
FT                 LTAHNRWPCRGEVCGVNGCQKRHHRLLHTDMLTEEMKSTGETKDATVSVHR
FT                 TLTSSTLFRVLPVTLYGSKGQVDTFAFLDDGSSVTMVDKSTAEALGLEGNA
FT                 ENLCIHWTGGIQKKICAQQVTVQISAVGSDKRFDASEVYIVEHLGLPEQTV
FT                 NFEEMEQRFAYLKGLPVRSFSTAVPGLMIGLSNIHLLATLKLREGRIGEPI
FT                 ATKTRIGWAVYGSLRGGVDQLPHRQMHIDTRPSDKDMHSFVQDFFALESLG
FT                 ISVVPTTETVENQQAWKILEETTKRTESGRFQTGLLWKNDKIQFPDSEPMA
FT                 EKRLMCLEKRLNRDPELYNTVRRQISEMQEKGYTHKATAAELAKFKRERSW
FT                 FLPLGVVLNPKKPGKVRLIWDAAAKVKGVSLNTELLSGPDLLAPLLRVMFG
FT                 FRERQVAICADIMEMFHQILIREEDRSAQLYKWRDSPDLTMETMIMDVAIF
FT                 GATCSPTQSQYVKNKNADEYEVTHPRAANAIKEKHYVDDYLDSLDTVQEAT
FT                 ELALEVAKVHAAGGFFIRNWISNDKTVLKQIGENSPTTVKSFIGEGQAERL
FT                 LGIVWLPEEDVFTFTLNFRPDIRILIEDVLVPSKREMLRVVMSIYDPLGLV
FT                 AAFVIHGKILIQDVWRTRIDWDQKVPLDVFNRWKLWLAVLLTMTSVRIPRC
FT                 YFPGYEPASYRSLQLHIFVDASEQAFAACAYFRIVDRGRVRCCLVASKTKV
FT                 APLRPLSIPRLELMAAVIGVRLKKTIINDHSLEIQQTFFHSDAGTVLAWIR
FT                 TDPRRYRQFVSFRVSEILSLSTVEEWRWVPTKLNVADEATKWGRGPSFEPD
FT                 SRIMIGPLFLYDDQREWPRDYRSGTEETEEELRPAYVYSHFLSKPLVNFSN
FT                 FSRWERLLRSVAYIHRFMGNLKRRCRQEPGMEGGLTTLELQEAERTLWRLV
FT                 QSDAYPDEVATLKYNLQADKKHLKKLEKRSPLAKLTPVMDKEGIVRIDGRL
FT                 VDSDYVTHDAKYPIILAKEHSVTTLLLDWYHRKFRHANNETVVNEVRQRFH
FT                 VPSVRVQVRAAKKRCMWCQVYKAVPVPPKMAPLPQVRLTPFKRPFTYTGID
FT                 YFGPYFVKVGRSTVKRWVALFTCLVTRAIHLEMTNNLSTDSCKKAIRRFIA
FT                 RRGAPAEFYSDRGTNFVGASRELIAEIKRINVQLSSTFTDHQTQWKFNPPA
FT                 APHMGGCWERMVRSVKVAMGVLPFERKLDEESLATFLAEAEHMINSRPLTF
FT                 VPVESDDHESLTPNHFLMLNSSGVKQPEKTPVDEGMALRGSWNKIQYTLDN
FT                 FWRRWLKEYQPTLTRRTKWFHDVRHVQEGDLVVIADEGVRNRWLRGRIMRT
FT                 YPGRDGIPRRADVRTSDGSVMRDRPVTKKFWRHVGE"
XX
SQ   Sequence 6681 BP; 1934 A; 1490 C; 1736 G; 1521 T; 0 other;
     gaaactaaag agcttaagga ttaggaacgt caatatgaat cggaaatcga ttgtaaggca        60
     aacacaattg cggacacagg acggaggaga aggtacacct aaccctcaga acgatgtcga       120
     tctacgcgag aatgcatccg tgatgtcatc agaggcaaat tttgaagcat ccacaatcga       180
     cgatgagcgg gcgaatgaaa gggattgtgg cgtctgcaat cgccccaaca aagccgaatg       240
     gttcatggta cagtgtggag attgtgggaa gtggtaccac ttttcctgtg ccggtgtgac       300
     tcataaaaca gtacattcca agccgttttc ttgtgcgtcg tgtgtccctc gatctattcc       360
     tgcagcaacc tcgatagctg agcgaacgag tacatctagc tcgcgcaagg caaaactggt       420
     tcgtgatatg cagcgccttg aggaggaacg cgccttggaa gaaaagatcc aacaagcaac       480
     attgaagaaa ctggagcgcg agagagagta catcgcacgg aaatatgaaa tcctggagca       540
     acaggacgag gctgacatgt cgagcgtgca tagtggtcgg tcaagtcgaa ctagcagagt       600
     gaaggagtgg ttactcgatc agaataatgc cgtagaagtt cccagggctg ttaccgatga       660
     tcctgtcgtt gaagacgggg aaaacagtca tgttggaact ttagttaatc gggacaatgt       720
     acagatcact tccactcctt tgaagacggg attttgtgca atcggcacaa accagaaggg       780
     tggtgaaagt cgcccagctt ccagtatcgg tggagtagcg gatagcgaca tggagaagac       840
     gttcgggagc ataaccatca atggcaatgg ccgtccaacg aaagcgggag ttacagaaaa       900
     cgtccttccg ctggtagatg tacagtcgct tgctgatcta ctggaaaaca cttcacccaa       960
     agttcctgaa aaaggtgttc gtccaaagaa tccaatacct ttttacgaga agtggcgtag      1020
     agagactgaa gatcttcgga aagaacatat cctacgacaa caacagcatg aaaatgaaat      1080
     tgaagtacga cgtaaacgtg agttggaact tgtcggcaag ctcaaccagt tgaaaggctg      1140
     caaggaggag caattcgaat tgcaacgtcg acgggaagca gacctcttgc gtcagctgca      1200
     gcttcgagaa gaagaaggtg cagagtttaa gaagcagcag caaaaagagt taaacgagcg      1260
     ggatgaggag ttgcaacgtc tgcgtaaaat agagcaggct ttccgcgtta tgcagatgtc      1320
     gtctcagcag aagcagattg acgcaaacgg tagtgacgga gcgagtgacg atgccatgcg      1380
     accgcaaggt tgctcgcaag caggatacgc caacaacatc cctatccaaa ccactccttt      1440
     ggtaagtgtg ccccatttat ctactgtttc tatggactca atagatactc cttcgaatac      1500
     acctcaccac cgaaatgagt tagacgagtc ttcaatggct acaccaatgg gtggtagatc      1560
     tcaatactct atccacacga atcaatcgtt gccaatgttt aaccattttc ccgctgatca      1620
     gcataaaccg ctgtcgaatc taccgacgtt tccccctttt gtcacgcccc aatatgaacc      1680
     atggcctcct ttcgtccacc caagaccgtc tgttgcaaac tatggtccac taccagtaca      1740
     gtttgggcca tcgccgcagc aagttgcagc aaggcaggtg atctctaaag aactgcctcc      1800
     attcactgga gacccaatcg aatggccgat gttcatttgt aattacatgc attcaacaag      1860
     tgcatgcggg tatacggact ccgaaaacct actgcgactt caacggtgtt tgaaaggcac      1920
     agccaaagat gcagttagta gtctcctcct acatccgtcg tcggtccctc aaataatttc      1980
     gacgttgcaa accttgtacg gccgacctga acaaatcgtt aacaacatgg tgtcgaaagt      2040
     gcgcagtgct cctgctccaa aagcggatcg cttggacaca tgggttacct ttggtctgat      2100
     ggtgcagaac ttgtgcggtc atcttagggc ggtcgggctg gagaatcatt tgtccaatcc      2160
     aattctattg caggagcttg tggagaaatt gccacctact gtcaagttta actgggcact      2220
     ttatcaacaa agcttgccca ctgtggatct caaaagtttc ggggactata tggagaaggt      2280
     tgccaccgct acaagtagtg tgaccacgtc tctaatcaac caaccaatga ctagcaggga      2340
     tgaacgagcc aggggcaagg acaaagcatt cgtgaatgct catgcagttt caactacaga      2400
     gaaagctgac gtaggagaat cttgccaaga gcatcaacac tatcaacagc atatttcagc      2460
     gaagaaagaa tcatcgtcat gtccggcctg tgacggagga ggtcatcagg ttgcaaactg      2520
     tgcgacattc agaaaactga gtgtagattc ccgctggaag gaagtgaaag agaagaggct      2580
     ttgtggccgg tgtttaacgg cgcataaccg ttggccttgc cgcggggaag tttgcggagt      2640
     gaatggttgt cagaaacgtc accaccgact acttcacacc gatatgctga cagaggaaat      2700
     gaagtcaacc ggagaaacaa aagatgccac tgtttcagtt catcgtacgc ttacgtcatc      2760
     aacgctattt cgtgtgctac cggtgactct ctacggtagc aaagggcaag ttgacacatt      2820
     cgcctttcta gatgatgggt cttccgtaac tatggtagat aaatcaacag cagaagcgct      2880
     agggcttgaa ggaaacgcag aaaatttgtg tattcattgg actggaggaa tccagaagaa      2940
     aatctgcgct caacaagtaa cggtacaaat atcagctgtt ggcagcgaca agcgctttga      3000
     cgcatctgag gtgtacattg ttgagcatct gggcttaccc gaacaaactg ttaactttga      3060
     ggaaatggaa caacgtttcg catatctcaa gggactgccg gtgagaagct tctcgacagc      3120
     tgtcccaggg ttgatgatag gactgagcaa tatccactta ttagctacac tgaaactgcg      3180
     tgaaggacgg atcggtgaac ccatagcaac gaagacgcgc attggatggg cagtttatgg      3240
     aagtctacgt gggggagtcg atcaactccc gcaccgtcaa atgcacattg atacgagacc      3300
     gtcggataaa gatatgcatt ctttcgtaca agatttcttt gccttggaaa gtctgggaat      3360
     ttcggtggta ccgacaacgg agacggtgga aaatcaacag gcctggaaaa tcctggagga      3420
     aaccacgaag cgtacggaga gcggtagatt tcaaacgggg ttgctctgga aaaatgataa      3480
     aattcaattc ccggacagcg aaccaatggc tgaaaagcgg cttatgtgtc tcgagaagcg      3540
     gctcaacaga gacccagagc tgtacaatac tgttcgtcga cagatatctg aaatgcaaga      3600
     gaagggctat acacataaag ccactgctgc tgaattggct aagttcaaac gtgaacgttc      3660
     atggttccta ccactaggag tggtattgaa tccaaagaaa ccaggaaagg ttagactgat      3720
     ttgggatgca gcggccaaag tcaaaggtgt ttcgctgaac actgaattat taagcggtcc      3780
     ggatctacta gcaccgctgt tgagagtgat gtttggattt cgcgagagac aagtggctat      3840
     atgtgcagac atcatggaga tgttccacca aatattaatt cgggaggaag accgcagcgc      3900
     acaactctac aagtggagag actcgccgga cctgacgatg gaaaccatga ttatggacgt      3960
     tgcaatcttc ggcgcgacat gttccccaac gcaatcccag tacgtaaaaa acaaaaatgc      4020
     cgacgaatac gaagttacgc atccaagagc agccaacgcg ataaaagaga agcactatgt      4080
     cgacgactat cttgacagtc tagatacagt acaagaagcg acagagttgg cactagaagt      4140
     ggctaaggtt catgcggctg gcggtttctt catccgaaac tggatatcaa acgacaaaac      4200
     cgtattgaag caaataggcg aaaatagtcc aacgaccgtg aaaagtttca tcggagaagg      4260
     ccaagctgaa cgcttattgg gaatcgtatg gctaccagag gaggacgttt tcacttttac      4320
     tctgaatttt cgtccagaca ttcggattct tattgaagac gtattggtgc catcgaagcg      4380
     agaaatgcta cgagtagtga tgagcatcta cgatccacta ggacttgttg cggcatttgt      4440
     tattcatgga aagattctca tccaagatgt ctggagaact agaatcgatt gggatcagaa      4500
     agtcccactg gatgtcttca atcgctggaa attgtggtta gccgttctgc tcacgatgac      4560
     cagcgtaagg attcctcgat gttatttccc aggctacgag cctgcaagct atcgctcact      4620
     gcaacttcac atattcgttg atgcaagtga gcaggctttc gctgcctgcg catattttcg      4680
     catcgtagat agaggaagag ttcgttgttg cttggtggcg tcgaaaacca aagtagcgcc      4740
     gcttagaccg ttatctatac cacgtctcga gttgatggcc gcagtgatag gagttcgttt      4800
     aaagaagaca atcataaacg atcattcttt ggagattcaa caaacgttct ttcatagtga      4860
     cgcgggtaca gtcctcgcct ggatccggac tgatcctcgt cgttatcgcc aatttgtctc      4920
     tttccgagtg agcgaaattt tgagcttgtc gacggtggaa gaatggcgtt gggttccgac      4980
     aaagcttaac gtcgcagacg aggcaacgaa gtggggaaga ggaccatcgt tcgaacccga      5040
     cagcagaatc atgataggac ctttgttctt gtacgatgat caacgtgagt ggcctaggga      5100
     ctaccgatca ggaacagagg agacagaaga agaacttcgg ccagcgtacg tatacagtca      5160
     ttttctatca aaaccacttg tgaatttctc gaatttttcg agatgggaac ggttgttgcg      5220
     tagcgttgcc tatatacacc gttttatggg aaacttgaaa cgacgctgca gacaggagcc      5280
     tgggatggaa ggaggcctca cgacgctaga attgcaggaa gcggaacgta cgctttggag      5340
     gcttgtacag tcggacgcat atcctgatga agtggccacc ctaaagtata acttgcaagc      5400
     agacaagaaa catcttaaga agcttgagaa aagaagccct cttgcgaaac tcactccagt      5460
     aatggacaaa gaaggaattg tccgtataga tggtcgacta gttgacagtg attacgtaac      5520
     ccacgatgca aagtatccca ttattctagc gaaagaacat tctgtaacca ccttactgtt      5580
     ggactggtat catcgcaaat ttcgccatgc caacaacgaa accgtggtga acgaagttcg      5640
     ccaaagattc cacgtgccaa gtgtgagagt tcaagtccga gcggcgaaaa agcgatgcat      5700
     gtggtgccaa gtgtacaaag ctgtacctgt tccaccaaaa atggcaccgc tgccccaagt      5760
     gcggctgaca cccttcaagc gaccgtttac gtacaccgga attgattact tcgggccgta      5820
     tttcgttaaa gtcgggcgat ctacggtgaa aagatgggtc gccctgttta catgtttggt      5880
     gactcgggcg attcatctgg agatgacgaa taatttgtca accgactcgt gtaagaaggc      5940
     gatacggaga ttcatagcgc gtagaggagc cccagctgag ttctactcgg accgtggaac      6000
     caacttcgtc ggtgccagcc gagaattaat agcagaaata aagcgcatca acgttcagct      6060
     cagcagcaca ttcacggatc atcagacaca atggaagttc aacccccctg ccgctccaca      6120
     catggggggc tgctgggagc ggatggtacg ctcggtcaaa gtcgcgatgg gggtattacc      6180
     tttcgaaagg aaactcgatg aagagtcctt ggcaacgttt cttgctgaag ccgagcacat      6240
     gataaactcg cgtcctttga ctttcgtgcc ggttgaaagc gacgatcacg agtcacttac      6300
     accgaatcac ttcctaatgc tgaattcaag tggagtgaaa caacctgaga agacaccggt      6360
     agacgagggc atggcattga gaggaagctg gaacaagata cagtacacgc tagacaattt      6420
     ctggcgacgc tggttgaagg agtatcaacc gaccctaacg cggcgaacta aatggttcca      6480
     tgatgttcgt catgtccaag aaggtgactt ggttgtaata gcggatgagg gagtgaggaa      6540
     tcggtggctc agaggtcgta taatgaggac atatccagga agagatggta taccacgccg      6600
     tgcagacgta cgtacatcag atggttcggt tatgcgagat cgaccagtaa ctaagaagtt      6660
     ctggcgacac gtgggggagg a                                                6681
//
ID   BEL-34_AA-LTR repbase;    DNA;    INV; 406 BP.
XX
AC   AAGE02019757;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_AA_;
KW   BEL-34_AA-I; BEL-34_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-406
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019757; Positions   28197   27792.
XX
SQ   Sequence 406 BP; 143 A; 58 C; 89 G; 116 T; 0 other;
     tgttgcggac agtgaggacc cctcgtcgat gatgcgatgt gatcccgtgt gtgaagaaag        60
     tggatggatg tcaaagtgac aaaaggtcag atgaagcgtc agttgaatga taaacattat       120
     tgaaagttgt ggacaacaag attattataa agtaaattga atttttcgta attaagatta       180
     ttattacact gttattaccc tattataggt caatcaagca aagaattcag tagtagtagt       240
     ctgtgggtgg ttgaatttat ttcggaaact aagctgtaag tagtatctgt taaacaagaa       300
     ttcgaagtaa ctgaataaat aaaacttatt gcagctttag cgatactctg cggaaacagc       360
     gagttgctta aagaaacccg aaaggataat accattacca ccaaca                      406
//
ID   BEL-34_AnFu-I repbase;    DNA;    INV; 6102 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6102
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 683-683 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..6042
FT                 /product="BEL-34_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MPTVKSSCVKCDLPDNVDDMVQCQVCKKWYHLCCAGV
FT                 GESISEAFWMCDACEGKGLGTAIKTRRPKSERAMAIGESSGQRRDLAKSET
FT                 RSLAALGKRDEPPAKPLQATSVAEHNPPKALSKRASSTTSRLMAQLSLQRL
FT                 EKEQELKKQILLAEKRKMEADISARIAEMELQHETMRNALQDDLENHSEFS
FT                 VAIKTDRTTEWVKQQKNQDETGFPPRCRQVESEKMSFAPCNALHRSSTPME
FT                 TPTTTAAQHAARKIWPKKLPYFSGCPKEWPLFLNCYREATIACGFSDGENT
FT                 MRLVECLRGAARDAVESKLMLPNSAPLIMKVLEKLFGKPSKLVRQLIEKVQ
FT                 KMEAPKPEQLNDLITFGIEVQNLCDHLRMNNMNNHFNNPVLLEDLVEKLPA
FT                 TRQLEWSRFQKHYDDPNLKEFGAFMEELVNEVCAVTVYVPPKVDRRRTPKG
FT                 FHSPLLVHAAEEEPTTSIPTSSRVFVTECLICAMPGHGVKQCEKFKRMNLK
FT                 DRLEAVSRAQLCSTCLNRHGSKPCRSRFTCRVEGCKEKHNTLLHGERGLKG
FT                 AAIQYHTHHHERQQVIFRIVPVTVHNGGLGIDTFAFLDEGSSITLMEAGLA
FT                 SQLKLKGEVEPLGLRWTANVTRMEETSQRVSFEISARGEERRYNIAAAHTV
FT                 KELSLPCNSKRLYTSLISSFTHLQGLPSTPLEDAKPTLMIGLQDVDLIRPL
FT                 ETRYGRPDEPIAVRSALGWAIYGPNQVSAGKAVLGIHRISSSEEKCSRDNN
FT                 REEGTDSDLLFFLNEHSRENNRDEGVSVEESPTQHSASELHGTSVLATRNS
FT                 PHEIMAAKRSRDKPREEGIELSREEPREEGTPTEDLNRELNELLRQQFLLD
FT                 DVGTYSGPLPEPSDVARAKEILQSSSSKVGGRFTTGLLWKSDDVHFPDSKP
FT                 MALKRLFALERKLDKDVDLKREVHQQIRDYVQKGYAHKALPDELDSADPKK
FT                 VWYLPINIVSHPKKPSKKRLVWDAAAKVNGISLNSQLLKGPDLLVMLPGVL
FT                 CVFRQRRIAFGGDIEKMFHQIRIRSEDTHSQRFLFRFEKSKDPDVYLMDVA
FT                 TFGATCSPCSAQYIMHRNADEHATSYPIAAAAIKRSTYMDDYFDSCDTKEE
FT                 AIERAKQVRFIHSQAGFNMRNWVSNDPTVLESMEEPETKLNPVAFKSTENE
FT                 SHTRVLGMVWDPITDVFQFSSSWHKDLTPYIADGKRPTKRIALRVIMSLFD
FT                 PLGILAPTLIHGRLLMQDLWRTCVDWDEQIGDEEYEKWKRWIAALPNLFQL
FT                 KIPRWYFKEAAMIPRDAIQLHVFTDASEQGYGCVAYFRIEMGDKAHCAFVM
FT                 SRSKVAPLKHLSVPRLELQAAVLGARMMQTVCENHDFNVTEKYIHTDSEVV
FT                 LSWIRSPPREFKQYVAYRVGEIRTLTDISNWRHVPTKENPADCLTKWNRDS
FT                 EINADGRWLNGPSFLYHPKECWPEQKPFKPTSEERKVPLLTHLVQYPEEPL
FT                 IDVSRFSKWKILLRTIATVHRFITNCRRKIKGEAIRTLKATEKQSSLIKAK
FT                 MKAEVVPIESDEYKWAETLVFQIAQKASFQKELHILRESNKDELASTPSVG
FT                 RASPLYSLDPFLDDLGVLRMEGRTANAAQVPYDTRFPVILPAQHIVTTLIL
FT                 RDYHERYGHANRETVVNEVRQRLYIPCLRAAVDKVMKACQRCKIRKSKSQN
FT                 PRMAQLPKQRLTPFIRPFSNVGVDYLGPIDVTNARRNEKRYVAVFTCLVTR
FT                 AVHLEVACSLSTESCIMAIKRLVCRRGPPAEIFSDNGTNFQGASNELKKQI
FT                 LNINHACATTFTNADTKWTFNPPSAPHMGGVWERMVRSVKEGLKALDDGRR
FT                 LTDETLATVLIEVESLINSRPLTYMPQTSSDMEALTPNHFLLGDSAGRKEK
FT                 LRALPEPAVALRSSYQRAVVLSEAMWDRWLKEYVPTLNRRSKWIDRSKQLE
FT                 PGDLVFITEGPRKEWPRAIVEEIFPGSDGTVRQVAVRTATGKILKRPTVKL
FT                 AVINAELDSEQQTHNTTVK"
XX
SQ   Sequence 6102 BP; 1845 A; 1378 C; 1549 G; 1329 T; 1 other;
     ttcttttaaa acgtttttta taaaaccgtt tgacgttaaa ttcgcgaaaa ataaccaaaa        60
     atgccgacag ttaaaagcag ttgcgtgaag tgtgatttgc cggacaatgt cgatgatatg       120
     gtgcagtgtc aggtgtgtaa aaagtggtat cacctttgct gtgccggggt aggagaaagc       180
     atctcagaag ctttctggat gtgcgatgcg tgcgaaggaa aaggtttggg aacggcgata       240
     aagacgcgac gcccgaagag tgaaagagcg atggcgatcg gtgaaagctc cggccagcgc       300
     cgcgatcttg ctaagagtga gacaagatcc ctggcagcgt tgggtaagag agacgaaccg       360
     ccagctaagc ctctgcaggc cactagtgtt gccgaacaca acccaccgaa agccctttct       420
     aaacgcgcca gctctactac ttcgcggtta atggcacaat tgtcgctaca gcgcttggag       480
     aaagagcaag agcttaagaa gcagattctg ttggcggaaa agcgaaaaat ggaagcggac       540
     attagtgcaa ggattgctga aatggaattg cagcatgaga ctatgcgcaa tgctctacaa       600
     gacgatttgg aaaaccactc cgaattttcg gttgccatta aaaccgatag gacaacggaa       660
     tgggtgaagc agcagaagaa tcaggatgag acgggttttc caccaaggtg tcgtcaagtg       720
     gaaagtgaaa aaatgtcgtt tgccccatgc aacgcgctac acagatcatc aaccccaatg       780
     gaaaccccta ccaccacggc agcacaacat gcggctcgca aaatatggcc gaagaaactg       840
     ccatactttt ccggctgtcc caaagaatgg ccgttgtttc ttaactgcta tcgagaagca       900
     accatagcgt gcgggttctc cgatggtgag aacactatga gattagtgga gtgcttaagg       960
     ggtgccgcta gagatgccgt tgaatccaaa ttgatgctgc caaactccgc accactgatc      1020
     atgaaggtgt tggagaaact cttcggcaaa ccatcgaaat tggtgagaca gctgatagag      1080
     aaggttcaga aaatggaggc accgaaacct gaacaactaa acgatctcat tacattcggt      1140
     atagaagtgc agaatctgtg cgatcacttg cggatgaaca acatgaacaa ccacttcaac      1200
     aaccctgtac tattagagga tttagtcgag aaacttccgg caacacgtca gttggaatgg      1260
     tctcgattcc aaaaacacta cgatgaccca aacttgaagg aatttggagc cttcatggaa      1320
     gagctggtga atgaagtgtg tgccgtgacg gtgtacgtcc caccgaaggt agatcgaaga      1380
     cggaccccca agggatttca ttcacccctt cttgtgcatg ctgccgaaga ggagccgaca      1440
     acgagcatac ctacaagttc aagagttttc gttactgaat gtttaatttg tgccatgcca      1500
     ggacacggag ttaagcaatg tgagaagttc aaaagaatga acctgaagga ccgactggaa      1560
     gcagtttcaa gggcgcagct ttgttctacg tgtcttaaca gacacggatc taaaccgtgt      1620
     cgatcgcggt tcacctgccg ggttgaaggc tgcaaagaaa agcataacac tctgttacac      1680
     ggcgaacgag gtcttaaggg cgcagccatt cagtaccaca cgcatcacca cgagagacaa      1740
     caagtgattt tccgcatcgt gcctgttaca gtccataacg gtggattggg catcgacacc      1800
     ttcgcattct tggatgaagg atcttccatc acacttatgg aagctggcct ggcttctcaa      1860
     ctaaagctga aaggagaagt ggaaccactg gggcttcgct ggacagccaa cgtgactcgg      1920
     atggaagaga catcgcagcg tgtgagcttc gagatatcgg cgagagggga ggagcggcgc      1980
     tataatatag cggccgctca caccgttaaa gagctgagtc ttccgtgcaa cagtaaacgt      2040
     ttatacactt cactgataag ttcttttaca cacttgcagg gtttgccatc tacaccactg      2100
     gaggacgcga aaccaaccct gatgatcggt cttcaagatg tcgatttgat aagacctttg      2160
     gagacacgat acggccgacc tgacgaaccg attgcagtga ggagcgccct aggctgggct      2220
     atttacggac cgaaccaagt gagtgctggt aaagcagtgt tagggatcca tcgaatctcg      2280
     agtagtgagg agaaatgttc ccgcgataac aaccgcgaag agggaacaga tagcgatctt      2340
     ctctttttcc ttaatgaaca ctcccgcgaa aacaatcgcg atgagggagt aagcgtggag      2400
     gagagtccca ctcaacactc ggcaagcgag ctccacggta catctgtttt agccacacga      2460
     aatagccctc acgaaataat ggccgcaaag cgttcccgcg acaagcctcg cgaagaggga      2520
     atagagcttt cccgcgaaga gcctcgcgaa gagggaacac cgactgaaga ccttaatcgc      2580
     gaactaaatg aattgctccg ccaacaattc ttattagatg acgtcggaac atattcaggt      2640
     ccgctaccag aaccttccga tgtagcaagg gccaaagaaa tattgcagag ttcgtcgagt      2700
     aaagtaggcg gccgattcac aacaggtcta ctctggaaaa gcgatgacgt tcattttccg      2760
     gatagcaaac ctatggcctt gaagagactg tttgctctag aacgaaagct ggacaaagac      2820
     gtggacctaa aaagagaagt gcatcaacaa attagggact atgtacaaaa gggctatgca      2880
     cataaagctt tacctgatga acttgattcc gcagacccta agaaagtatg gtatctcccg      2940
     ataaacatag tgtcccatcc taagaaaccg tcaaaaaagc gtctagtgtg ggacgcggct      3000
     gcaaaagtga acggcatctc tctaaattcg caactcctaa aagggccaga cttgcttgta      3060
     atgctgccag gagttttgtg tgtatttagg caaagacgga ttgcctttgg tggtgatata      3120
     gagaagatgt ttcaccaaat acgaattcgc agcgaagata cccacagcca gagatttttg      3180
     tttcgtttcg agaagagtaa ggacccggat gtatacctta tggatgttgc tacatttggt      3240
     gcaacttgct cgccatgttc ggcacaatac atcatgcacc gtaacgcaga cgaacacgcg      3300
     accagttacc cgattgctgc agctgctata aaacgttcca cgtacatgga cgactatttc      3360
     gacagctgcg atactaaaga agaggcaatc gaacgagcaa aacaagtaag attcatacat      3420
     tcccaagcag ggtttaatat gcgtaactgg gtcagcaacg atcccaccgt gcttgaaagc      3480
     atggaagagc ccgaaactaa actaaaccca gtcgccttta agtccactga aaacgagagc      3540
     catactagag tgcttgggat ggtctgggac ccaattacag acgttttcca attttcttcg      3600
     tcgtggcata aagatctaac accctacata gctgatggta aacgtcctac caaacggata      3660
     gccctaagag tgatcatgag cttgtttgat ccgttgggaa tattggcccc gacactgatt      3720
     cacggacgct tactcatgca agacctttgg cgaacgtgcg ttgactggga tgaacaaatc      3780
     ggcgacgagg aatacgaaaa atggaaaagg tggattgcag cgctaccaaa cctcttccaa      3840
     ctaaaaatac cgcgctggta tttcaaagaa gctgcaatga taccacgaga tgccattcaa      3900
     cttcatgtat ttacggacgc tagcgagcaa ggatatggct gtgtcgcata ttttcgaata      3960
     gaaatgggag acaaagctca ctgcgcgttt gtaatgtcca ggagtaaggt tgctcctcta      4020
     aagcatttat ccgtaccgag gctggaattg caagcagcag tattaggagc gaggatgatg      4080
     caaacagtgt gtgaaaacca cgatttcaac gtgacggaaa agtacatcca taccgattcc      4140
     gaggttgtac tctcttggat tcggtcgcca cctcgcgagt tcaagcagta tgtggcctat      4200
     agggttggag aaattcgtac tcttacggat attagtaatt ggaggcacgt tcctacaaaa      4260
     gagaatccgg ccgattgcct aacaaaatgg aacagagatt cggaaatcaa cgcagatgga      4320
     agatggttaa atggtccgtc ttttctctac catccaaaag agtgctggcc agagcaaaaa      4380
     ccattcaagc ccacatcaga agagagaaag gtacctcttc tcacgcactt ggtccagtat      4440
     cccgaagaac ctttaataga cgtgtcccgc ttttccaaat ggaaaatttt gctgaggacg      4500
     atagcaactg tccaccggtt tatcacaaat tgccgacgaa aaataaaagg tgaggcaata      4560
     cgaaccctga aggcgacaga aaaacagtcg agtctcatca aagcaaaaat gaaagcagag      4620
     gttgtcccga ttgaatcaga cgaatacaaa tgggcagaaa cgttagtatt tcagattgct      4680
     caaaaggcat cgtttcaaaa ggagctacat atccttaggg aaagtaacaa agatgaattg      4740
     gcctcaacac ctagtgtggg acgcgcaagt ccattataca gcctcgaccc gttcctggac      4800
     gacctggggg ttcttagaat ggaaggaaga accgcgaacg cagcgcaagt accatacgac      4860
     acgcggttcc cagtgattct gcctgcgcag catattgtta caacacttat cttgcgagat      4920
     taccacgagc ggtacgggca tgcaaatcgt gagaccgtgg tgaacgaagt ccggcagcgc      4980
     ttatacatac cttgtttacg agcagctgtc gataaagtta tgaaagcctg ccaacggtgc      5040
     aagataagaa agagtaagtc gcaaaatcct cgaatggcgc aactcccgaa gcaaagactt      5100
     acaccgttca tacgcccatt cagcaatgta ggggtagact acctcggccc gatagacgtg      5160
     acaaatgcac gacgaaatga aaagcgatat gtagcggtct tcacgtgcct agtaacgcga      5220
     gcggtacatc tagaagtagc ctgcagtctg tccacagaat cgtgcatcat ggcgattaaa      5280
     agactcgttt gtaggagagg accaccagca gaaatatttt ccgacaacgg gacaaacttc      5340
     caaggggcca gtaatgaact gaaaaaacaa atactgaaca ttaatcatgc ttgcgccacc      5400
     acgtttacta atgctgatac taagtggact ttcaatcctc cctcggcgcc acacatgggt      5460
     ggagtttggg agcgcatggt gcgcagtgtg aaggaagggt tgaaggcgct ggatgatgga      5520
     agaaggctga ctgatgaaac tttggcgacg gtgttgatcg aagtggaaag tttgattaac      5580
     tcgcgtccac taacgtatat gcctcaaaca tcgtcagaca tggaagcatt aaccccgaac      5640
     cattttcttt taggcgactc cgctgggaga aaagaaaagt tgcgagcgtt accggaacca      5700
     gctgtagcac tccgtagtag ctaccaacga gcagtcgtcc tttccgaggc catgtgggac      5760
     cgttggttaa aagaatacgt tccgacactt aaccgacgtt cgaagtggat agatcgtagc      5820
     aaacagttag agccaggaga tttagtgttt ataacggaag gtcccaggaa agagtggccg      5880
     cgcgcsatag tagaggagat ttttccggga agcgatggga cggtaaggca agtagcggtg      5940
     cgcactgcta caggcaaaat attaaaacgc ccgacggtga aactagcggt gataaacgcg      6000
     gagctagata gcgaacaaca aacgcataac actaccgtaa agtagggata acaatagtga      6060
     acaacaaatt cgtgcaggca gatgtgttca cgtggtgggg aa                         6102
//
ID   BEL-34_AnFu-LTR repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-411
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 737-737 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 411 BP; 134 A; 79 C; 104 G; 94 T; 0 other;
     tgttggcaca atgttatgcg gagattgaca atcgattgtt gttctaccgg ctgtcatcgg        60
     gtgatcgagt tgatctaatc gatacatcca agatcgtact attgggcgct agatggcgct       120
     agtctatgta gtgagcgaga tataagagct gcgttagagc gagtagaagg gatgcattaa       180
     cgcaggacga ataagaaatt aggtcaatca gggctacaaa ggtcacgggc gcctggcgcc       240
     aggtcagctg atcgatagaa gttagtagca aagtagacgc taagagaaaa cgttttaaaa       300
     gcgacccaag caagcaaaaa cttaaatcct accaaactgc ggtcagctaa ataaagtgat       360
     caaactagcg taaaatcaaa attttgttac tccgttgccc acgaagcaac a                411
//
ID   BEL-34_CQ-I repbase;    DNA;    INV; 6494 BP.
XX
AC   AAWU01003986;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_CQ_;
KW   BEL-34_CQ-LTR; BEL-34_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 221-221 (2011).
XX
DR   GenBank; AAWU01003986; Positions   16606   10113.
XX
CC   Positions [5508-6086] - Integrase core
CC   'ATTGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1149..6494
FT                 /product="BEL-34_CQ-I_1p"
FT                 /translation="MSRRSTVTRLRNLMTSFNGIYAFMESYDASKQAGELV
FT                 MRLEKLEPLWDKIDDAITEAELADSEEGTGEEERGEDKGEEKSESGEKKGS
FT                 KPERYANIRSAFQNKYFTVKAFLQSKIRELPDQAQALPMVSQSAHTTPSTQ
FT                 HVKLPTISLPRFSGNYEDWLPFRDLFVSLIHSSDLPNIEKFHYLRNQLDGP
FT                 AKTEIANVKFTADHYTVAWELLEKRFGNTKHMKKLEIKSLFDLPTLRKESV
FT                 AELRELVEGFDKTVRVLDQVVEYAKYRDLLLVHLLCSRLDDKTLRSWEEHV
FT                 STKTEETFQDLIDFLRRHICVLESLPTKHQESHQSKPRKAFATKVSNQNTV
FT                 HSNPNFGCLACSDSHPLFKCPSFARMSVSEREKIVNQNALCRNCFRKGHIA
FT                 RNCTSRFSCQRCKERHHTLVCYKPEGKPNLCPAIPARPTKEEAGTAATAES
FT                 SSAAVAETRTANTSSAATVGKVLLATAVLLLVDDAGQEFPARALLDSGSEC
FT                 NIVSTKLAQRMHVSRNKANVQISGVGQVPTKTSQKVRATVKSRLSKYCEVM
FT                 EFYVLAKVTEDLPTSPVESTSWTVPEGVQLADPEFFRTNPIDVLLGGEFFF
FT                 NFFPSKQRISLGAGLPSLVESVFGWIVTGRCGWNRGEAPIVCQHSTVTETL
FT                 EEIMTKFWECEDGGFTSDYSVEESTCEDHYVRTVKRGGDGRYTVGMPKSAD
FT                 LHIKLGESKSAADRRLLFLERRLARDDDLKKEYHAFMKDYLDRNHMCKIIE
FT                 DPTSTATTYYLPHHPVIRSSSTTTRVRVVFDASSKTSTGTSLNDVLLNGPV
FT                 IQDDLRTIISRSRLFPILLVADVEKMFRQIRMDAEDLPLQRIRWRFSEDDP
FT                 IDTYELLTVTYGTKPAPFLATRTLKQLSVDDATKYPLAAVRIARDVYMDDV
FT                 ITGAYHPAEAKQIREQLHTMTLGAGFPLRKWVSNCEEALEGVSEDNLALPR
FT                 EKGIDFDEERTVKTLGLVWEPKTDTFRFKIESTLIPPNELTKAKILSIIAK
FT                 IFDPLGLVGPVVAKAKIFMQGIWELKNAKGKPWDWNDPLPKSMLDEWMQFY
FT                 EQLHYLNNLRIPRFAMIPNPVHIQLHFCSDASEKALGANLYIRSEDKEGRV
FT                 KVSFFTSKSRVAPLKRQPIPRLELNGFWLAADMYRKFKECTTFRFETFFWT
FT                 DSRTVLQWLAKPPRTWNAYVANRVSFIQHITQGCHLFHVPGVMNPADQLSR
FT                 GLDPKEFIDGDWDPLWMYETSSWPAQATPEEETEDCAKERRKHVESAAAVS
FT                 AKSFNESYFAKFNEYWKLIRTTAYWRRYLRNRRLPEAERTLSVPLTTKELQ
FT                 EAEWCLARLVQQEAFSRELQDLSKGKPVHNTSKLRWFNPQLSKEGVIRVGG
FT                 RLGNCDRNENFKHPIIIPGNHHFSKLLADCLHLRLFHAGTQLMLATMRQKF
FT                 WPLRGRDLCRQTTHQCKDCFKAKPQLLQQFMGQLPTPRTIAARPFTNTGVD
FT                 YFGPVYIRQGYRRGPVKAYVAVFVCFGTKAVHLELVSDLSTAKFLQALRRF
FT                 VARRGKPADMYSDNGTNFVGAKNDLKDLLHNLRHEKHHEHIQHECSQEGIN
FT                 WHFIPPGAPHFGGLWEAAVKSAKKHLLRVVGQSSISHEDYITLLAQVEACL
FT                 NSRPLTPLTEDPSDLEPLTPAHFLIGTSLEAVPDKNYSEIPNNRLTHWQSI
FT                 QQQLQHFWRRWHTEYLQQLQARVKNWQPAIEIRPGRLVIVVDENQPSMKRK
FT                 MARIHEIHPGADGVVRVVTLRTATGYLKRPVTKICLLPIPAESIEEEKAET
FT                 AEIGQFQGGSE"
XX
SQ   Sequence 6494 BP; 1598 A; 1822 C; 1702 G; 1372 T; 0 other;
     tttggtcctt cgaaccggat cggttgaagg tacccgcctg gagtcggttt cccgcgtccg        60
     gaacacgctg gaccaagccg atcggaccgc cattgtcgcg aggacgcaca ataggccacc       120
     gcggacaatt ggatattgtc ggaggagccc tacaaatccc gagttctttg tcgaggaggt       180
     acaaaggacg ttccgccatc gaggttccct gaggttggcg ccatttcccg agcgtcatct       240
     cacccgatcc cagccaagga ttggcctgat tccaacggtt tggcactcat ccacggactg       300
     tgccactaat tgacggcgat taccacgatc gccacttgta cgaggtttcc gagtttggtg       360
     ccatttcccg agcgtcgttc cgaccgcgcc ggccagtgta cgagagttcc tgattttaac       420
     tttacaaggc ccgtttaaat cgggagcagg ttagtaccgc cccaataccc taaaatcggt       480
     ttagtcggtg ttacgctttg gcacttttcc ctcccgcgag tcaaatcgca tccaggtgtg       540
     ccagcctcca gacgctgcaa cgttcccgaa cggtcatcgg aactgaccgt atccgtgctt       600
     ggactgtccc ggtccacccc agcgaaccga ttcgcacatc ggtaccccgt tgtacgcgcc       660
     cgacaaccga tcgttcgagc cgatttggat tcggcactgg attcgaacga gaccacgccc       720
     accgaagctc gtaaggactc gagctacccg tcgaccggaa gtcggcattg gtctaccaca       780
     ccctgtgtgg tcccactcat cgagagagag agagtgatcg tcgcctggaa tcgatcacta       840
     cgtcgtgctg ccgattcggc gccaaccacc cacaatccca cccaccgaag tcgacagcgg       900
     actgtcggcg agagcagcga tcgttcgtga accgtcccat cccacaaagc cctgaggttc       960
     gtgcacaagg aggtcgctcc atttcccact ttgaggtgaa ggcccgtacc aggaaaacgg      1020
     tgcataatta attcaaggca cgaattaatt ggcaatcggt tagtaccatt ccaatatttc      1080
     cccgcgcatc ccaagggtgc tcctttcgtg cttgtttatt ctagctgccc atttgtacat      1140
     ctgccacgat gtctcgtcgc tcaaccgtga cccgcctgcg caacctgatg acgtcgttca      1200
     acgggatcta cgctttcatg gagagctacg acgcaagcaa gcaggccggc gagctggtta      1260
     tgcggctgga gaagctcgag ccgctgtggg acaaaatcga cgatgccatc acggaggcgg      1320
     agctagcgga cagtgaggag gggaccggcg aggaggagag aggtgaggat aagggtgagg      1380
     aaaaaagtga gagtggtgag aaaaaggggt ccaaaccgga gaggtacgcc aacattcgga      1440
     gtgccttcca gaataaatat tttacggtca aagcattcct gcagtctaaa attcgggagc      1500
     ttcccgatca agcccaagcc ctgcccatgg tttcgcagtc cgcccacacc accccttcta      1560
     cccaacacgt taaattgcct actatcagtc tgccaaggtt ctctgggaac tatgaggatt      1620
     ggttgccttt tcgagatctc ttcgtgtcgc tgattcactc gtcggatttg ccaaatattg      1680
     aaaagtttca ctatctgcga aatcaacttg atggtcctgc caaaacggag atcgcgaacg      1740
     tgaaatttac tgcagaccac tacactgtgg cgtgggagtt actggaaaag cggttcggca      1800
     acaccaagca catgaagaag ctggaaatca agagtttgtt tgacctacca actttgcgga      1860
     aggagtcggt tgctgagcta cgcgaactgg tggaaggatt cgacaaaacc gttcgagttc      1920
     tggatcaagt tgtggagtac gccaagtaca gggatcttct tcttgttcat ctgctgtgct      1980
     ctcgtttgga cgacaaaacg ctgcgcagct gggaggagca cgtgtccacg aagacggaag      2040
     agactttcca ggatctgatc gacttcctgc gtcggcacat ctgtgttctg gaatctctgc      2100
     ctaccaaaca ccaagagtcc caccagtcca aaccccgtaa agctttcgcc accaaggtct      2160
     ccaaccaaaa cacggtccat tccaatccca acttcggctg tttggcatgt tctgactcac      2220
     accccctctt caaatgccca tcgtttgcga ggatgtcagt cagcgagagg gagaagatcg      2280
     tcaatcagaa cgcgctgtgc agaaactgtt tccggaaggg ccacatcgct aggaattgta      2340
     cttccaggtt ttcgtgtcag cgatgtaagg aacgccacca tacgctggtc tgctacaaac      2400
     cggaaggaaa acccaaccta tgtccagcca tcccagcaag gccaaccaag gaggaggcag      2460
     gaacggcggc gaccgctgag tcgtcctctg ctgctgtcgc ggagacacgt acggcgaaca      2520
     ccagttctgc agctacggtc ggaaaggtgc ttttagcaac cgcagtactt ttgctcgtcg      2580
     acgatgctgg acaggagttt ccagcaaggg cacttttgga ctctgggtca gagtgcaata      2640
     tcgtctccac caaactcgct caacggatgc acgtgtcccg gaacaaggca aacgtgcaga      2700
     tttccggtgt tggtcaagta cctacaaaaa cttcgcagaa ggttcgagcc acggtcaagt      2760
     ccagattgtc gaagtactgc gaggtcatgg agttttacgt tttggccaag gtgactgaag      2820
     atctaccaac ctccccggtg gaatcaacta gctggactgt ccccgaaggt gtccaactgg      2880
     cggaccctga attcttcaga accaacccta tcgatgtttt gctcggcgga gagttcttct      2940
     ttaacttctt cccatccaaa cagaggatct cgcttggagc aggactacca tccctggtcg      3000
     aatcggtgtt cggctggatc gtgactggca ggtgcggctg gaaccgtgga gaagcaccga      3060
     tcgtatgcca gcattcaacc gtaacggaaa ccttggagga aattatgacc aaattctggg      3120
     aatgcgagga cggaggattt acttccgatt attccgtgga ggagagcacg tgcgaggacc      3180
     actacgtgcg caccgtcaag cgaggtggag acggtcggta caccgttgga atgccaaagt      3240
     cggctgattt gcacatcaag ctaggagaat cgaaaagcgc tgctgatcgt cgtcttcttt      3300
     tccttgagag aaggttggct cgcgacgatg acctgaagaa ggagtaccat gcgttcatga      3360
     aggattactt ggacaggaac cacatgtgca agatcatcga agacccgaca agcaccgcga      3420
     ccacctacta cctcccacac caccccgtca tccgaagttc cagcacaaca acgcgcgtcc      3480
     gtgtcgtatt tgatgcgtca agcaaaacct ccactgggac atccctaaac gacgttctgc      3540
     tgaacggccc agtcatccag gacgacctgc gcaccatcat ctcccgaagc cgcctgtttc      3600
     ccatccttct cgtcgcagac gtggagaaaa tgtttcggca gattcggatg gacgccgagg      3660
     acctaccgct gcagagaatt cgctggcgct tctcggagga cgatcccatc gacacgtacg      3720
     agctgctaac cgtgacgtac ggcaccaaac cggcgccgtt cctggccacc agaaccctga      3780
     agcagctgtc cgtcgatgat gcaaccaagt acccactggc cgccgtgagg atcgcgcgag      3840
     atgtttacat ggacgatgta atcactggtg cataccaccc tgccgaagcg aaacaaattc      3900
     gtgagcaact gcacacgatg acgctgggag caggttttcc gcttcgtaag tgggtctcca      3960
     actgtgagga agcgctcgag ggtgtgagtg aggacaactt ggcgctaccg agagagaagg      4020
     ggatcgattt cgacgaagag aggaccgtga agactcttgg gttggtctgg gagccgaaaa      4080
     ctgacacgtt ccggttcaag attgagtcga cgctgatccc accgaacgag ctgaccaagg      4140
     ccaaaatact ctctatcatt gccaaaattt tcgatccttt ggggcttgtt ggaccggtgg      4200
     tggctaaggc aaagatcttt atgcagggaa tctgggagct gaagaacgcg aagggcaaac      4260
     cctgggactg gaacgatcct ctgccgaagt cgatgctgga cgagtggatg cagttctacg      4320
     agcagctgca ctacctgaac aacctgcgga ttccaagatt cgctatgatc cccaatccag      4380
     tccacattca actccacttt tgtagcgatg cttccgagaa ggcactgggt gcgaatcttt      4440
     acatccgttc tgaggacaag gaggggagag tcaaggtgtc tttcttcacg tccaaatctc      4500
     gggtcgctcc tctcaagcga caacccattc cccggctcga gctgaacgga ttttggctag      4560
     ccgcagacat gtaccggaag ttcaaggagt gcacaacttt ccgtttcgaa accttcttct      4620
     ggacggattc cagaacggtc ctgcagtggc ttgcgaaacc cccaagaacg tggaatgcct      4680
     acgtggcaaa ccgtgtctcc tttatccagc atattaccca aggttgccac ttgttccatg      4740
     tacccggagt catgaaccca gctgaccagc tgtccagagg actggacccc aaggagttca      4800
     ttgacggaga ttgggacccg ttgtggatgt acgagacgag ttcctggcct gcccaagcaa      4860
     cacccgaaga ggagaccgaa gattgcgcca aggagaggag aaaacacgtc gagtcagctg      4920
     ctgcagtttc tgccaagtca ttcaacgaat cgtattttgc gaagttcaac gaatactgga      4980
     agctgatccg cacgaccgcc tactggagac ggtacctgcg caatcgtcgt ttaccggaag      5040
     ccgagcgtac cctgtcagtc ccgctaacca ccaaggaact acaagaagcg gaatggtgtc      5100
     tcgcacggct ggtccagcaa gaagctttca gcagggaact ccaggacctg tccaaaggca      5160
     aacctgtcca caacacctcg aagctacggt ggttcaaccc gcaactctcc aaggaaggtg      5220
     tcatccgcgt gggaggacgg ttgggcaact gcgaccgaaa cgagaacttc aagcacccga      5280
     ttatcatccc aggaaaccac cacttctcca aacttctggc cgactgcctg catctacgac      5340
     tgtttcacgc cggaacccag ctgatgctag cgacgatgcg acagaagttt tggccgctga      5400
     gaggacgaga cctatgtcgg caaaccacac accagtgcaa ggactgtttc aaggcgaaac      5460
     ctcaacttct acagcaattt atgggacaac taccaactcc aagaacgatc gccgctcgac      5520
     ctttcaccaa tacaggcgta gactactttg ggccagtcta cattaggcaa gggtatagaa      5580
     gggggccggt taaggcttac gtagctgtgt tcgtttgctt tggaactaaa gcggtccatt      5640
     tggagctggt ttcggacctg tccaccgcca agttccttca agcgctgcgt cggtttgtgg      5700
     ctcgtcgggg aaagccagcc gacatgtatt ccgacaatgg cacaaatttt gtcggcgcga      5760
     aaaatgacct caaagacctt ttgcacaacc tcaggcacga gaaacaccac gaacacatcc      5820
     agcacgaatg ctcccaggag ggtataaatt ggcactttat ccctcctggc gctccccact      5880
     ttggtgggct ctgggaagcc gctgttaagt ccgccaagaa acaccttctc cgcgttgttg      5940
     gtcaatcctc catctcacac gaggactaca taaccctcct cgcccaggta gaggcttgcc      6000
     tcaactcaag acccctcacg cccctcactg aagatccctc cgacctcgaa ccgctaaccc      6060
     ccgctcactt cctgatcggg acatccctag aagctgtgcc ggacaagaac tattccgaga      6120
     tcccgaacaa ccgcctcaca cactggcaga gcatccaaca gcagcttcaa catttctggc      6180
     gtcggtggca tacggagtac ctgcaacaac tacaagctcg tgttaagaac tggcagcctg      6240
     cgatagaaat tcgccctgga cgtcttgtca tcgtggtcga cgagaaccaa ccgtcgatga      6300
     aacggaagat ggcacgaata cacgagattc atcccggcgc tgatggtgtg gtccgcgtag      6360
     ttacgcttcg gactgctact ggatacctga agagaccagt tacgaagatt tgcctgttac      6420
     caataccagc agaatcgatc gaggaagaaa aggcagagac tgctgaaatc gggcaatttc      6480
     agggggggtc ggaa                                                        6494
//
ID   BEL-34_CQ-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   AAWU01003986;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_CQ_;
KW   BEL-34_CQ-I; BEL-34_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 222-222 (2011).
XX
DR   GenBank; AAWU01003986; Positions   10112    9829.
XX
SQ   Sequence 284 BP; 72 A; 95 C; 69 G; 48 T; 0 other;
     tgttcggatt ctgtaaaccc ctcggaccgt gtggaccgag agttctaaac cgcgaacggc        60
     agatccctct gatcgccatt tcgccgcgaa ggccgcgaga gaagaggtga gagagaaact       120
     ggaccgcgat ctccgctggt gagccttcga ggattctgcg atccagcttg cgcaacagta       180
     cgcttcagcg cttcactccg cgaagacccg cacgaaaacc tcctccggag catcccacat       240
     cccaacaacc aaccaggtac cctcaaccaa aaccggttcc aaca                        284
//
ID   BEL-34_DTa-I repbase;    DNA;    INV; 5517 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5517
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5701-5701 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..5515
FT                 /product="BEL-34_DTa-I_1p"
FT                 /translation="MVKFPQSGALRRATYVMDQSTEPSGEESHAFKCSLCQ
FT                 IANEDVTLVCNGSECESMCHPGCAEERVDGVGWICAACEADAHEQNHMTFR
FT                 SGKLEETVPSKEYNTTPQGGDPDEQGADGAPTSKREALHLREELTLLEEED
FT                 HILKLRQQLLQRRRELLSRSAAERADLSWTANVPEACSTQACQKPQVSNNT
FT                 LLDVPGFNSKKSSYPWMLSTGGERDTVVMSGRPAARISAEQLAARKTNVAD
FT                 LVKFSGKPEDWPMFLATYEQSTELCGFSDAENLMRLRHALEGPAKLAVRSL
FT                 MLHADCVPQILSTLEMRFGRPEIIIDLLLKQIKQFPSVRENKLENIVDFAM
FT                 EVQNVCATMKASKLEQYLNNPALTQELVSKLPCILQTFWGMHKMTLRVCTL
FT                 ADFSAWLSQMAQGANSVMVPSSQGRSERRGVVNTHVVRKACKVCLKNCGSV
FT                 QECRKFLEMTTSDRWKMTRRLGLCWRCFSNHTVQSCGMAGTCGLEGCQQKH
FT                 HPLLHRESREGVQANCNAHRQDAAAAVLFRVVPVTLYSNGNQVNTHAFLDD
FT                 GSSLTLIDEPLLAALGVKGQRQPLCMQWTAGMHRYEDESVRVDLQISGAGM
FT                 TKVYNLRDVHSVKALDLPAQTLDVDHLKNKYKHLRHLPLGGYAGAQPRLLI
FT                 GLNNCGLGRALRTREGSLEEPIAEKTRLGWTVKGGGTTSSTDAEIRRYHVF
FT                 QICACEEDNNKEILRLLRQHLWSEQEVGYGAECKSQSDDDLLAVRQLEANT
FT                 MRVEGRFETSLLWRHKDSDLPDSLPTALKRAHCLNQKLLRQPDLASEVRRQ
FT                 LDEYVRKGYARPISPTEAVESPYWYLPIFPVVNVNKPGKLRIVWDAAARSE
FT                 GISLNSLLLKGPAQLAPLVPILRRYRERRVAIGGDIAEMFHQVRIRAEDQR
FT                 YQRFIFIDPETQKRENYVMQVMTFGASCSPSCAQFVKNRNASEFEKQYPRA
FT                 VKCILENHYVDDMLDSVDTEEEAINLARTVHHIHSQAGFHIRNWVSNSRTV
FT                 LEALGQEKGAMVQLDENADKGTEKVLGMWWDTKEDMIRYRVSPRYKQGEVL
FT                 QGKRRPTKREFLSMMMSIYDPLGLISFFVMYAKTMFQEIWRSGCQWDDPIL
FT                 EAEWIKWKRWIHHIPNIEELCIPRCYMPKQLRGHQVEMHTFVDASESGFAA
FT                 VCYLRIKFGPAIHCCLLGSKAKVAPLRLVSIPRLELMGATLGARLAYEVEK
FT                 SLAMQICKRIFWTDSRTVLSWLRSDQRKYKQFVAFRVSEILDTTKQEDWRW
FT                 VPTSQNVADEATKWTRTPDFSSGSRWLNGPKFLWQESEGWPTESAQKTDET
FT                 DAELKVQFIGVCAWNESISHAQLIDPLRFSSWTRLLRSMAKVIWSLRRWKS
FT                 KGLTAKQVEDSTTQEDLLMAESILWSDAQAEHYQDELALLRMGRPLTRKSS
FT                 LYKLGPYLDGNGVLRLQERTKMGSGKDRVVLPSSSPITQLIIAELHAKLLH
FT                 ANHETLINELRQSFWIPKLRPTVARLRRSCQICKNRQAAPRPPRMADLPYP
FT                 RLAAFHRPFSYTGVDYFGPLLVTVRRSSEKRYGVLFTCLSTRAIHLEVAYS
FT                 LTADSCILAVRNFIARRGRPVELWSDNGTNFQGASTELRRALDVLDKVQLE
FT                 REFTGPEMKWKFIPPASPHMGGAWERLVRSVKVALYSILSSARPSDELLRG
FT                 ALMEVEMIVNSRPLTYIPVKDENEEALTPNHFLLGSSSGSKPATEPTVEGM
FT                 LLKRSWMASQQLADMFWKRWLLEYLPVITRRGKWCHDSKPLEAGDIVYVCD
FT                 PGNPRSSWPKGRILSVKLSADGQVRSATVKTISGVYVRPATKLAVLSIESN
FT                 GVESSRNIPAG"
XX
SQ   Sequence 5517 BP; 1487 A; 1326 C; 1555 G; 1149 T; 0 other;
     ttcttaaatt tcttttatgg tgaaatttcc ccagagcggt gctctgaggc gtgctacata        60
     cgtcatggat caatctaccg aacccagcgg cgaggaaagc catgctttta aatgttccct       120
     atgtcaaata gcgaacgagg atgtcacact tgtctgcaat ggcagcgaat gtgaaagcat       180
     gtgccaccca ggttgcgccg aggaaagggt agacggagta ggttggatct gcgcagcgtg       240
     cgaggctgat gcccacgagc agaatcacat gacgttcaga tcaggaaagc tcgaggaaac       300
     ggttccttca aaggaataca acacaacccc acaaggtgga gacccggacg agcaaggagc       360
     ggatggagcc cctacatcga agagggaagc actgcacctg cgcgaggagt tgacgttgtt       420
     agaagaagag gaccacattc taaaactgag gcagcaacta ctgcagaggc gaagggagct       480
     tctgtcgagg tccgcagcgg agcgggctga cctcagttgg acggcaaatg tgccggaggc       540
     atgcagtacc caagcgtgcc agaaacccca agtgtcgaac aacacattac tggatgtacc       600
     agggttcaac agtaagaagt catcttaccc atggatgttg agtaccggcg gggagcgtga       660
     cactgtagtc atgtcgggcc gaccagcagc cagaatatca gcagagcagc tggctgcgcg       720
     gaaaactaat gttgctgact tggtaaagtt ttccggaaag cctgaggact ggcccatgtt       780
     cctggccacg tacgaacagt cgaccgagct atgtgggttt tccgacgccg agaacctgat       840
     gcggctgcgc cacgcactgg agggtccagc aaagttagcg gttcggagct taatgctaca       900
     cgcagactgc gttccgcaga tattgtccac attggagatg cgtttcggaa ggccggaaat       960
     aataatcgat ttgttgctta aacaaataaa acaatttccc tcggtgaggg aaaacaagtt      1020
     ggagaacata gtcgactttg ctatggaggt gcaaaacgtg tgcgccacca tgaaggcgtc      1080
     caagttggag cagtacctca acaaccctgc tctaacgcaa gaattggtat ccaaactgcc      1140
     atgcatactc cagacctttt ggggcatgca caagatgact ctacgtgtgt gtaccctggc      1200
     agactttagc gcatggctct cgcagatggc gcaaggagcg aacagcgtta tggttcccag      1260
     ttcgcaagga aggtctgaga ggcgaggagt ggtgaatacg cacgtggtgc gtaaggcatg      1320
     caaggtgtgt ctaaagaact gtggatcagt tcaggagtgc agaaagttcc tggagatgac      1380
     aacttcagat cgttggaaga tgaccaggcg attaggacta tgctggcggt gcttctcaaa      1440
     tcacacagtc cagtcttgcg gtatggctgg cacttgcggc ttagaagggt gtcagcagaa      1500
     gcaccaccca ttgctacatc gggagagccg tgaaggtgtt caggctaact gtaatgctca      1560
     tcgtcaagac gcagcagctg ctgtgctgtt tcgcgtcgta ccagtgacgc tttactccaa      1620
     tgggaatcaa gttaacacac acgccttttt agacgacgga tcttctctca ccctgattga      1680
     tgaacccctg ttggcggccc taggagtgaa gggacaacga cagcctctct gtatgcagtg      1740
     gaccgcaggg atgcatcgct acgaagacga atccgttaga gtggatcttc aaatctcggg      1800
     tgccggcatg accaaggtat acaatttgag agatgttcac tctgtcaaag cacttgatct      1860
     cccggcgcaa acgttggatg tcgaccatct gaagaacaag tacaagcacc taagacactt      1920
     accactagga ggctacgctg gagcccaacc gagactgctg atcggtctta acaactgcgg      1980
     tcttggacgc gccctccgca caagggaagg cagtctggag gaacccatcg ccgagaagac      2040
     ccgactagga tggacggtta aaggcggtgg aacaacgtcc tctacggatg cggaaatcag      2100
     aagatatcat gtattccaga tatgtgcttg tgaggaggac aacaataaag agattctgcg      2160
     acttctccga caacacctgt ggtcggaaca ggaagtgggt tacggagcgg agtgtaaatc      2220
     ccaatctgat gacgatcttc tggccgtccg gcaattggag gcaaatacga tgcgcgtcga      2280
     aggacggttt gagaccagcc tgctgtggag gcataaggat agtgatctac ccgatagtct      2340
     gcccaccgcc ctcaagcgag cacattgtct taatcagaag ctgttgcgtc aaccagacct      2400
     ggctagcgag gtgcgacgac aactagacga gtacgtacgg aaaggatatg caagaccaat      2460
     ctcaccaaca gaagcagttg aaagccctta ctggtatctg ccaatattcc ccgtagtcaa      2520
     cgttaataag ccgggaaagc ttcgcattgt gtgggacgca gccgcaagaa gcgagggtat      2580
     ttcacttaac tctctactgc tgaaagggcc agctcaactg gcgcctctgg tgcccatact      2640
     acgcaggtac cgagaaaggc gagtggccat cggcggagac attgcggaaa tgtttcacca      2700
     ggtgagaata cgcgcagaag atcaaaggta tcaacgcttc atattcatag acccggaaac      2760
     gcaaaagcgg gagaactacg ttatgcaagt aatgaccttc ggggcaagtt gctccccaag      2820
     ctgcgcgcaa tttgtgaaga accgaaatgc cagtgaattc gagaagcagt atccgagagc      2880
     cgtgaagtgc attcttgaga atcactatgt agacgacatg ctggatagtg ttgacacaga      2940
     agaagaggca attaacttgg ccagaaccgt gcaccatata cattctcaag cgggattcca      3000
     catacgaaac tgggtttcca actcccgaac agtcctggag gcactaggac aagagaaggg      3060
     tgcgatggta caactggatg agaacgctga caagggtaca gagaaggttc ttggcatgtg      3120
     gtgggataca aaggaagata tgatcaggta tcgcgtatcg ccaagataca agcaagggga      3180
     agtgctgcaa gggaaacgcc gccccaccaa gcgggagttt ctaagcatga tgatgtccat      3240
     atacgacccg cttggactca tttcattctt cgtgatgtac gccaaaacca tgtttcaaga      3300
     gatttggcgg tctggatgtc agtgggacga ccctatactg gaagcagaat ggatcaaatg      3360
     gaagcgatgg attcatcaca ttcccaatat cgaggaattg tgcatcccca ggtgctatat      3420
     gcctaaacag ctgcgggggc accaggtgga gatgcacacc tttgtagatg ccagcgaaag      3480
     tggattcgca gccgtgtgtt atctacgaat caaatttgga cccgctatcc actgctgctt      3540
     gctgggcagc aaagcaaagg tagctccgct gaggctggta tctatcccac gtctggaact      3600
     catgggcgct actcttggcg ccaggctggc atatgaagtg gaaaagtcac ttgccatgca      3660
     gatttgcaaa cggatattct ggaccgattc gagaacagtg ctgagctggc tgcgctcgga      3720
     tcagaggaag tacaagcaat ttgtggcgtt tcgggtaagc gaaatattag ataccacaaa      3780
     gcaggaggac tggcgctggg ttccaacttc ccaaaatgta gcagacgaag ctacgaagtg      3840
     gacccggaca cccgacttca gcagcggaag ccgatggcta aatgggccaa aattcctatg      3900
     gcaggaatca gaaggctggc caactgaatc agcccaaaaa accgacgaaa ctgatgctga      3960
     actaaaggtg cagtttattg gagtatgcgc atggaacgaa agcataagtc atgcacagct      4020
     tatcgacccg ttgagattct cttcttggac cagactactg cggagtatgg cgaaagtgat      4080
     ctggagcctt cgacgctgga aatcaaaagg gctgacagcc aaacaagttg aagactcgac      4140
     tacccaagag gatcttttaa tggcagaaag tatcctatgg tcagatgcgc aggccgagca      4200
     ctaccaggac gagctggcat tgctgcgcat gggtcgacct ctgacgagga aaagttcctt      4260
     gtacaaattg gggccgtacc tcgacggtaa cggtgtgtta cgacttcaag agcgcacgaa      4320
     gatgggaagc ggtaaggata gagtggtcct acctagcagt agtcccatca cccagcttat      4380
     cattgcggag ctacacgcaa agcttctgca tgccaaccac gagaccctga tcaacgagct      4440
     ccgacagagt ttctggatcc ccaagctgag gccaaccgtt gcacgcttac gtcgatcctg      4500
     tcaaatatgt aagaataggc aggcagcacc caggccacct cggatggcag atctcccata      4560
     tccaaggctg gctgcattcc atcgtccgtt cagttacaca ggagtggatt attttggacc      4620
     tcttctggtt acggttaggc gaagctcgga aaaaagatac ggagtgttgt tcacttgcct      4680
     ctctacgaga gccatacact tggaggtagc gtattcccta acagccgact cttgtattct      4740
     agcagtgcgc aacttcatag ctcggcgtgg caggcccgtg gaactgtgga gcgacaacgg      4800
     caccaacttc caaggggcta gtaccgaact ccggagggca ctggacgtgc tggacaaggt      4860
     tcagctggaa cgtgagttta ccggccctga gatgaagtgg aagttcatcc ctcctgcatc      4920
     gccccacatg ggtggggctt gggagcgctt ggtgcgatca gtgaaggtgg ctctgtactc      4980
     cattctatca agcgcacgac cctcggacga gttgcttcgc ggggcgctaa tggaagtaga      5040
     aatgatagtg aactctcggc cgctcaccta catcccggta aaagacgaga atgaggaggc      5100
     cctcacacct aatcatttcc tgctcgggag ttcaagtgga agtaagccgg ctacggaacc      5160
     tactgtcgaa ggaatgctgc tcaaaaggag ctggatggca tcgcagcagc ttgcggatat      5220
     gttctggaag cggtggctat tggaatacct gccggtgatc acgagacgtg ggaaatggtg      5280
     tcacgatagc aaaccgctag aggcaggaga cattgtttac gtctgcgacc ctggcaaccc      5340
     cagatccagc tggcccaaag gccgtatctt gagcgtgaag ctcagcgcag atggacaagt      5400
     gaggagcgct acagtgaaga cgatctctgg agtatacgtg agaccagcca cgaagcttgc      5460
     agttctatct atcgagtcta atggggtaga atccagtcgg aatataccgg cggggag         5517
//
ID   BEL-34_DTa-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-378
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5626-5626 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 378 BP; 117 A; 68 C; 84 G; 109 T; 0 other;
     tgttgcgata gattataaga actagttcgg cgggacattt ctaacactag gacgtatact        60
     atcgatatta aggccgatag gggagatcga tataatgtat gggaaaggtg accaccatta       120
     gattcctgga agttagcaca tgtaaagttt tcactctttt ctgatttggc acgggaagta       180
     agcggactaa aagtaagaat tgtgaaccta agttagaaac cctaacctaa tattgtaacc       240
     tacaggaaat ttaagtgctc gccaaatgct cgatttgaat tgcttcgcat tgaagtgctt       300
     gcgctaataa atattattgg aaactacgta agcttcagta ttcttggcgg cgctggaact       360
     tttcgaactc ccgcaaca                                                     378
//
ID   BEL-34_SpEx-I repbase;    DNA;    INV; 6066 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6066
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6912-6912 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           355..5562
FT                 /product="BEL-34_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEALFLMQDELFDNLMKAERNFKKTPKDRIKRQYLET
FT                 RLELLEQLFQDFKDGHKEVVAKTKNKKEAYFTEGKYEIFEELYVQYKSSLR
FT                 EALQQFLPPIIELPNSAISNSVNNNWSDVKLPRIQLPTFGGKYEEWPTFFD
FT                 MFSSLIHSNKNISSVQKLHYLKSNLSGEALNLLSNFSTTDANYEEAWTQLV
FT                 RRYNNKRYNCNAVMRTLFGLKKIQTESANAIRSLLDTTSTCMKSLENLGIR
FT                 TDSSFANAFVVHLVVTKLDTESVKQWEQQISMMSDELPTWTQLRDYLEYRF
FT                 RTLEMLDTNGNRAAQQVKPAAKSKSFHVSVEKEKENKTKAKEECPMCHESH
FT                 YLNQCKRFNLMTPKERQDYVQTSKLCFNCLAPTHAVAKCRQSFSCKKCGRR
FT                 HHTMLHFLRENQEPASRSEQAATVPPSEPQQERASTSRGDTTITATFSRGE
FT                 LQPNSVLLATAKVKVFRYNGFKLLIRALIDQGSQASFVSESTVQLLGLVRK
FT                 PVSGWVSGLGDGRMRIKHTVSLRLESRHNPACYVLVNAYVLHSLTSLLPST
FT                 NMSTSNWVDIDDLPLADPTYATPGKIDILLGAEVYSEILLDGVIKHPDCNL
FT                 IAQNTLFGWILSGRMSKGCQTLAKDNVISMHVQIKEDDLLKRFWEMEDEPN
FT                 LIKKEMTESEKVCENLFDLTTVRDXEGRFIVRLPFATDDPKCQYGNTEMRA
FT                 VKRLEYLERKLSKDSKLREEYNKVMSEYLSMNHMRLVSESELRHKSKAVYL
FT                 PHHAVVREDKDTTKVRVVFDASSKGDNNVSLNDELCVGPRLQHDLRHILMR
FT                 WRQYKICIVADIVKMYRMVRVADEDTDFQRIVWRFGPTEPIKHYKLLRLTF
FT                 GTACAPYLAVKVLHRLADLERNKYPLAAEITKQCYYMDDLMTGCDTLDEAI
FT                 QIYEEMNELMKSGGFELQKWNCNNEKFLEQIGKTELSERHGIKLNDLIKVL
FT                 GLSWNKKNDNFEYVVTLTEPKNLVTKRQVLSEVARLYDPLGWIAPVIVNAK
FT                 ILIQKLWKSGLEWDESLTNELNSEWLKYRQELADLTNLRVPRWVNFTHDCK
FT                 RELHVFSDSSKSAFAAAVYLRVIDSSNRVNVHLMAAKTRVAPIVKEISIPR
FT                 LELCGATLAAKLICEVSQVLEIPKEHLYGWTDSTIVLAWLKGGSSRWATFV
FT                 SNRVSTILNIMDCHQWSHVSSETNPADCASRGLQPKELSEHTLWWRGPQWL
FT                 SEPTICTESKVIEDTHEEERIQSLTVLSDVDDDFFWCKYSSLNKLLKIVSY
FT                 CRRVLNYKLNKENRSKLFKFITPNEMNESLLACIKQVQEREFSLEIKRLKN
FT                 GGCVPKNSNLRSLCPFLSQNGILRVSGRIDQSDACYDTKHPIIMPGNHHLT
FT                 KVLIADAHVKTLHGGPQAMLNFLRAKYWILRARDRVKKYFRECTTCLRYST
FT                 KKTTPLMGLLPEARLKPSKPFKSTGVDYCGPVFIRFSPGRGAKSYKSYICI
FT                 FVCMVTRAVHLEAVTDMTAKAFIAAFRRFTARRGHCQNLYSDNGTNFVGAD
FT                 KQMRDMFNSAQSSLPGEIAELLSLERTNWHYIPPXSPNFGGLWEASVRSTK
FT                 THLKKVVGNNTLTYEEMSTVLAQVEACLNSRPLSLLSDDPNDPLPLTPGHF
FT                 LVGEPLLNIADEDYTNCNVIGLDRWRLTQKIVTDFWNRWYKEYLVNLNQRY
FT                 KWNLKRDEPEIGDICVLREDNVPPAKWLLGKIINKYPGPDNVTRVVSVRCK
FT                 TGEYKRPVSKICILTK"
XX
SQ   Sequence 6066 BP; 1957 A; 986 C; 1345 G; 1769 T; 9 other;
     tatggtcctt ttcgagccgg atcgtgttag tgaacccggc cgctcgcgag aacaaaagat        60
     ttttacctga gagcgataag gagtcgtcgg gtgacccgag ttttgctaat tacttatgag       120
     caagttttaa gacattttaa caacgtgaat atagtgaaat taattgacga taaacggtta       180
     cttgtttaca aggtgtatgt gacttttagt gcaaattaca ataccagtac attgagtgag       240
     tgtttaaaga aattataaat aacaaactgt aacggagcga gaaactatta cctaaacaag       300
     tgaccgatcg gagtggttta ctgagatagc cgtacgagtt tatttgtttc tacaatggag       360
     gcactttttt taatgcaaga tgagttgttc gacaatttaa tgaaagcgga gagaaacttt       420
     aagaagactc cgaaagaccg wattaaacgt cagtatttag aaacgagatt ggaattgtta       480
     gaacagcttt ttcaagattt taaggatgga cataaggagg tagttgcaaa gacgaaaaat       540
     aagaaggaag catattttac agagggaaaa tatgagattt ttgaggagct atatgtacag       600
     tataaatcga gtttacgaga agctttgcaa cagtttttgc cgccaattat tgagttacct       660
     aactcagcaa tttctaatag cgtgaacaat aattggagtg atgtaaaact accccgtata       720
     caattaccta cgtttggggg taaatatgaa gaatggccaa ccttttttga tatgttttcc       780
     tcattgatac atagcaataa gaatatttca tcggtacaga aattacatta cctgaagtcc       840
     aatttaagtg gagaagcatt aaatctacta agtaattttt cgacaactga tgcaaattat       900
     gaggaagcat ggacgcagtt agttcggcga tacaataaca agcgttataa ttgtaatgct       960
     gttatgagga ctttatttgg cttaaagaaa attcaaactg agtcagccaa tgcaattaga      1020
     agtttattgg atactacttc tacttgtatg aaatctttgg agaacttggg catcaggacc      1080
     gattccagtt ttgccaatgc ttttgtcgtt cacttagtcg tgacaaaatt ggacactgaa      1140
     tccgtgaaac aatgggaaca gcagatatct atgatgagtg atgagttgcc cacgtggacg      1200
     caactgagag attacttaga ataccgattc aggacattag aaatgctaga tacaaatggg      1260
     aatcgcgccg cacaacaagt taagcctgct gctaagtcaa aatcatttca cgtatcagta      1320
     gagaaggaga aagagaacaa gactaaagct aaagaagaat gtccgatgtg tcatgaaagt      1380
     cattacctca atcaatgcaa gcgttttaac ctgatgacac ctaaagagag acaggattac      1440
     gttcagacga gtaaattatg ttttaattgc ctggcgccta ctcatgcggt agccaagtgt      1500
     cgtcagtcat tcagttgcaa gaaatgtggg agaagacatc acacgatgtt acattttttg      1560
     agagaaaacc aggagccagc cagtagatcg gagcaagcag ctacagtgcc gccaagtgaa      1620
     ccacaacagg agagagcgag tacatcacga ggtgatacca ctataactgc tacattttct      1680
     agaggagagc tgcaaccaaa cagcgtgcta cttgcgacgg ctaaggttaa ggtattccgt      1740
     tataacggtt ttaaactact tattagagct ttaattgacc aagggtcaca agcatctttt      1800
     gtatctgagt caactgtaca attattaggt ctggtgcgca aaccagtgag tggctgggtg      1860
     tcagggctag gagatggccg tatgagaata aaacacacag tttcacttcg tctggaatca      1920
     cgccataatc cagcttgtta tgtcctagtt aacgcttatg tgttacattc cttaacgtca      1980
     ctacttcctt caaccaacat gagtacttcc aattgggtgg acattgacga tcttccttta      2040
     gctgatccta cttacgcgac gccaggtaag atagatattt tgttaggtgc agaggtttat      2100
     agcgaaatat tactagatgg cgttataaag catcctgatt gtaatttgat tgcacagaat      2160
     acactgtttg gatggatttt gtctggtaga atgtcaaagg gatgtcaaac gttagcgaaa      2220
     gataatgtaa ttagtatgca tgtacaaata aaggaagatg atttactcaa aaggttttgg      2280
     gagatggaag atgagcctaa tttaataaag aaagagatga ctgagagtga gaaagtatgt      2340
     gagaatttgt ttgatttgac tacagtgaga gataakgaag ggagatttat agtgaggtta      2400
     cctttcgcta cggacgatcc taagtgtcaa tatggtaata cggaaatgag agcagtgaaa      2460
     aggttagaat atttggaaag gaagctatcg aaagattcaa agttgagaga agaatataat      2520
     aaggttatga gtgagtactt gagtatgaat cacatgagat tagtttctga gagtgagttg      2580
     cggcataagt ctaaagctgt ctatcttcct caccatgctg tggtgagaga agacaaagac      2640
     acaactaagg tgagagtcgt ctttgacgct tcgagcaaag gtgacaacaa tgtgtcgtta      2700
     aatgatgagc tttgtgttgg accaaggtta caacacgatt taagacatat tttgatgaga      2760
     tggcgtcaat ataaaatatg tatcgttgcc gacattgtga aaatgtatcg gatggtgaga      2820
     gtggcggacg aggataccga tttccagaga attgtctgga gatttgggcc gacggaaccc      2880
     ataaaacatt acaagttatt acgtttgaca ttcggtacag catgtgcgcc atatctagct      2940
     gtcaaggtgt tgcaccgatt agctgactta gaaaggaaca aatatccatt agctgcagaa      3000
     ataacaaaac aatgttatta catggatgat ttaatgactg gatgtgacac gcttgatgag      3060
     gcaattcaaa tttatgagga gatgaatgag ttaatgaaaa gtggtggatt tgagttgcag      3120
     aagtggaatt gtaataacga aaagttttta gagcagattg ggaaaactga gttgagtgaa      3180
     aggcacggta ttaaattaaa tgatctgatc aaggtattag gtttaagttg gaacaaaaag      3240
     aatgataatt ttgaatacgt agtgacctta acggaaccta agaatttagt cactaaacga      3300
     caagtattat ctgaagtagc gagattgtat gacccattag gctggattgc cccagtaata      3360
     gttaatgcta agattttaat tcaaaagctt tggaaatccg gtcttgagtg ggatgagagt      3420
     ttgacaaatg aattgaatag tgagtggcta aaatacagac aagagttagc agatttaaca      3480
     aaccttaggg tacctagatg ggtaaatttt acccacgatt gcaaaagaga gttacacgtg      3540
     ttttcagatt cctcaaaatc agcctttgcg gcagcagtat acttacgtgt tattgatagt      3600
     tcgaatcgag tgaatgtaca tttaatggcc gcaaaaactc gagttgcccc aatcgtaaaa      3660
     gaaatttcca taccccgact tgaactgtgt ggcgccacct tagcagccaa gcttatatgt      3720
     gaggtatcac aagttttgga gatacccaag gaacatctct atggatggac cgactccaca      3780
     atagtgttag catggctcaa gggaggctca agtcgttggg caacttttgt tagcaacaga      3840
     gtgtccacta tattaaatat tatggattgc catcagtgga gtcatgtctc atcagagaca      3900
     aaccctgcgg actgtgcttc gcgtggtctg cagcccaaag agttgagtga acatacattg      3960
     tggtggagag gaccgcagtg gttgtcagaa cccaccatat gcactgagag taaagttatt      4020
     gaggacacac acgaagagga acgaatccaa tctttaaccg ttttatctga cgttgacgat      4080
     gatttttttt ggtgtaaata ttcatcttta aataaactat tgaaaattgt atcctattgt      4140
     agacgagttt tgaattataa attgaataag gaaaatagat ctaaactatt taaatttatc      4200
     acgcctaatg aaatgaacga aagtttatta gcatgtatta aacaagtaca agagcgcgag      4260
     ttttcattag aaataaaacg attaaagaat ggaggatgtg tgcctaaaaa tagtaatctg      4320
     cgatctcttt gtcccttttt gagccaaaat gggatattaa gagtaagtgg acgcatagac      4380
     caatcggacg catgttatga cacgaagcac ccgataatta tgcctggtaa ccatcatctt      4440
     accaaggttt taattgcgga tgctcatgtt aaaacattgc acggaggccc acaagccatg      4500
     ttaaattttc ttagagcaaa atattggatt ttgcgggcaa gggatcgcgt taaaaaatat      4560
     tttagagagt gcacgacttg cttgaggtat tctacaaaga agactactcc tctaatgggc      4620
     ctgcttccag aagcaaggtt gaaacccagt aagccattca aatctactgg tgtggattac      4680
     tgtggtcccg tttttataag attttcacct ggccgaggag ccaagtctta caaaagctat      4740
     atttgtatat tcgtgtgtat ggttacccga gcagtccatt tagaagcagt aaccgacatg      4800
     actgccaagg cctttattgc cgcatttcgg cgattcactg ctcgtagagg ccattgtcaa      4860
     aacttatata gtgacaatgg cactaatttt gttggcgccg ataagcaaat gcgcgatatg      4920
     tttaatagtg cccagtcttc tctgcctgga gaaatagcag aacttctttc tttagaaaga      4980
     acaaactggc attatattcc tccccamtcc cctaacttcg gcggattgtg ggaagcctcg      5040
     gtgcgcagta ctaaaaccca tttgaaaaaa gtagtaggta ataatacgct tacttacgaa      5100
     gagatgtcga cagtcctggc gcaggtggag gcgtgtttaa actcgagacc gctttccttg      5160
     ttaagcgatg acccaaacga ccccctaccc ttgacaccag gccacttctt ggtaggcgaa      5220
     ccattgttaa atattgcaga tgaggattat actaattgta atgttattgg tttagataga      5280
     tggcgattga cgcaaaaaat tgtaacagac ttttggaata ggtggtataa agaatactta      5340
     gttaatttaa atcaacggta taaatggaac ctaaaacgtg atgaaccaga gataggcgat      5400
     atttgtgtcc taagggagga caatgtacca ccagccaaat ggttactagg caaaattata      5460
     aataaatatc ctggacctga taatgtaacc cgagtcgtat ctgtaagatg caaaaccgga      5520
     gaatataaac gtccggtgag caaaatttgt attttaacta aataaatgat ctgttaattt      5580
     ctgttacatt gcttagaatc tagttaamcc ctattttagt cgttatcaag ttcgtttata      5640
     tacacttagg taaaatttac attgtttaca atgtgttacg agtttatatt tactaagttt      5700
     aactgtatta tatataagag tttatattag ctaagttaag tttaagaatg aatcgttctg      5760
     tctgcatatt ttagtttata atgagctatg tacttactaa tgatctacat aaattcctat      5820
     ttgtcattga tgtaggtact taattgaata cgccgcacgt gttacgcgtc gcttcaawat      5880
     actgaccaca aatgggaacg ataaaggttg ttttgttttt tttacttwwt ttgtttaaga      5940
     tgttaagacg mattgttttt ttttcattta cacattacat tgttgtwata tgtttacgta      6000
     tatgtgagtt ataagagtta tttttataag atgtagttaa agaactatgt tctttggcgg      6060
     ccggaa                                                                 6066
//
ID   BEL-34_SpEx-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-34_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6941-6941 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 194 BP; 72 A; 36 C; 26 G; 60 T; 0 other;
     tgtctaaata attgtcttaa tagattagca ttgaatgttt taaatgaacg attgagtagt        60
     aatagctatc tatacttgtg aatacagtcc actatgaacc ccactcccca gttgcaaata       120
     aaccggcata caaatcacac gttgtttcat taaaaattat tagcaaacga atatcaaact       180
     tctggcatta aaca                                                         194
//
ID   BEL-35_AA-I repbase;    DNA;    INV; 6251 BP.
XX
AC   supercont1.126;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_AA_;
KW   BEL-35_AA-LTR; BEL-35_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6251
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.126; Positions 1389829 1383579.
XX
CC   'TCCTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..6251
FT                 /product="BEL-35_AA-I_1p"
FT                 /translation="MAEKGNDSQAQRNCAACTQPDEVCDMVSCDKCKLWYH
FT                 FTCVQVDATVKHRRWYCVTCEPLFRMNPNCHDEQQQSKDNSNPIDAVESEV
FT                 KEPRVKATKTITGKQTGATAKASSQRDLALRPGTRITRSKAGSKGTKVSKK
FT                 TAADRSVSSSIRAQLALELEVLEEKQRVEEEELANDREMMEQQLQQEQVMR
FT                 QKELDMEARKLAEEKAFMQRKLEEEREFRNRQLALKRHSIEEKAKLIRQMS
FT                 ECSSRTSTDVSESASKEKVSEWLLRVDQQTEGVLQSSTSVNKTGTVLQHKS
FT                 YDNTAKTQLGAKQIVDKQLGFSLADISETNPVPYFDRLNVGENKKSYANIS
FT                 PGNAMQNVTGHVPGSKEGIRNQTNDRLESASVIINHPQTRGVFGLQSREGY
FT                 TDQKVRPSGQEEFNSGGQRVPEFVHGNDEGPTNRQIAARQVMGKDLPLFSG
FT                 NPEEWPIWISNFQRSTATCGFSLDENLIRLQRSLRSAALDAVRSRLLCPSS
FT                 VPHVIKTLEMRYGRPETLIRVMTERIKHLPPPRMNDLDSIIEFGLTVDNLV
FT                 EHLRNAGQQAHLSNPSLLHDLVIKLPVDYRLKWSAYKSSTYNADLGVFGRF
FT                 MSSLVELAYEVADEFPTQRNDKVQKPKAKERMFVQTHAEYNDSKSKPVPAE
FT                 KASRKPCPICKLDGHKTPDCIRFKGMSIDNRWKVVDQQGLCRTCLNQHGKW
FT                 PCRTWKGCGISECTSRHHTLLHSFSPTVRAAVSTSHLSGSQENHGPMFRIL
FT                 PVTLFGEKCQVNIYAFVDEGSEITLLEDSIAEQLGLSGQNEALNLQWTGDI
FT                 KRNESNSRRVNAEVAGFGLCKKFKLINARTVSSLSLPAQTMKYQQLANIYP
FT                 HLQGLPLQDYEQASPKLLIGLDNLKLTVPLKIREGGWKEPIAAKCRLGWSL
FT                 YGGGSSTSKAVVCGFHVGGWTNSEQELTQLVRDYITLDNVVVSRPFTPLES
FT                 DDEKRARMLLESTTQRVEGGFETGLLWRRNNVRFPESFGMAYNRLRSLERK
FT                 FDKTPGLFERVRQQIQEYELNGYAYKATAEELSGTSSGRYWYLPLGIVINP
FT                 KKPNKLRMIWDAAATVDGISLNSELLKGPDFLTSLPTVIGKFRLYQYALAG
FT                 DIKEMFHRFSIRPEDRQYLRFLFRDHPSQEPVVYVMDVAIFGATCSPSCAQ
FT                 YIKNLNAAEFESDFPRAVNAIIYRHYVDDYLDSFGTQEEAIKVGSEVKQIH
FT                 AAGGFEIRNFLSNDPVIAMKVGDKSPAEERDIRTEKGDGDAGRAESVLGMR
FT                 WIPNNDVFTYTVSLRDNLKHVLKESHIPTKREVLRTVMSFFDPMGLITFFL
FT                 IHGRVLMQDIWAAGIDWDNEINERMRCQWRRWIELVPQLTDLQVPRCYFPN
FT                 AIEQTYSSLQVHVFVDASKSAYACTVYFRVETAEGPLVSLVAARAKVAPLK
FT                 MLTIPRLELQAAVLGARLLDSVITMHNLPVQKRVLWSDSSTVLAWIRSDQR
FT                 RYHQYVGFRVGEILTTTDVNEWRKIDSALNVTDDATKWGSGTVIASDSRWF
FT                 CGPDFLRQPEECWPGNEMTTHTTEEELVSCNIHCLTPASLVDVTRFSRWER
FT                 LLRTIAYVLRFLDNCRCLQRSRTTHHVILHQRELERAETLLWKQAQEEYFG
FT                 SEVAILEASKGGPENRHKLLQKSSVLYKLWPFMDEWGVVRKRNRLENAECI
FT                 QHGTKYPVILPRQHRITFLIVDSYHRRFRHGNRETIVNEIRQVYEIPKLRS
FT                 LVAKVAKDCTWCKVFYASPCTPPMAPLPKVRVTPYVRPFTYVGLDYFGPIL
FT                 IRCGRSVVKRWVALFTCLTIRAVHLEVAHSLSTESCVMAVRRFVARRGAPL
FT                 EIFSDNGTNFHGANNQLRQELAERSKHLATVFTNTQTRWTFNPPSAPHMGG
FT                 AWERMVRSVKAAIGTILEDKRRPTDEILETVIVEAESMINTRPLTYVPLES
FT                 ADQEALTPNHFIFGNSNGAKQPPIEPVDYRTTLRSGWKQAQHLSDAIWSRW
FT                 IKEYLPVISRRSKWFEEVKELEEGDLVLVINGSVRNQWTRGRIEKVIPGRD
FT                 GRVRQALVRTRTGIMRRPSVKLALLDVLDERKPTVREGLRAGE"
XX
SQ   Sequence 6251 BP; 1884 A; 1285 C; 1577 G; 1505 T; 0 other;
     aatttcttta gaaatttttc acgtggcatt tggaagatcc aaacatggcg gagaaaggta        60
     atgattcaca agctcagagg aattgcgcag cttgtacgca acccgacgaa gtgtgcgaca       120
     tggtatcttg cgacaagtgc aaactttggt accacttcac ttgcgtacaa gtcgatgcta       180
     ccgtcaaaca tcggagatgg tattgtgtga cgtgtgaacc cctttttcga atgaacccga       240
     actgtcacga tgaacaacaa caatcgaaag acaattccaa tccgatcgat gcagttgaaa       300
     gtgaagttaa agaacctcga gtaaaagcta ccaaaacaat aaccggaaag caaaccggag       360
     ccacggccaa agcttctagt caacgagatt tggccctcag gccaggcacg agaatcacca       420
     ggtctaaggc gggaagtaaa ggtaccaagg tgtcgaagaa gactgcagct gatcgtagcg       480
     ttagttccag cataagagcc cagttagcac tagagctgga ggtattagag gaaaaacaac       540
     gagtcgaaga agaggaatta gcaaacgacc gagaaatgat ggaacaacaa ttacaacagg       600
     agcaggtaat gcgacagaag gagcttgata tggaagcgcg caagcttgcg gaggagaagg       660
     cgtttatgca acgtaaactt gaagaggaga gagagtttcg gaatcggcaa ctggcgctaa       720
     aacgacattc catagaagag aaggcaaaac ttattcgaca gatgtcggag tgtagcagca       780
     ggacaagtac ggacgtaagt gaatccgcat ccaaggaaaa agtatcggaa tggttactac       840
     gagttgatca gcagacagag ggagttctac aatcatccac gtcagtgaac aaaacaggta       900
     ccgttctaca acataaatct tacgataaca ctgcaaaaac acagttaggt gcgaagcaaa       960
     tagtagataa gcagttaggt ttctcgcttg ctgacatatc cgagacaaat ccggtaccat      1020
     atttcgatag gttgaatgtt ggcgaaaata agaaaagcta tgcaaacatt tctccaggca      1080
     atgctatgca aaacgttact gggcatgtcc cggggtctaa agaggggatc agaaatcaaa      1140
     ctaacgatcg attagagtca gcctctgtaa taataaatca tccacaaaca cggggggtat      1200
     ttgggctcca atcacgagag gggtataccg accaaaaggt tagaccgtct ggacaagaag      1260
     agttcaacag cggtggtcaa cgagttcctg agtttgttca tggcaacgat gaaggtccaa      1320
     cgaatcggca aatagcagcg cgacaagtga tgggaaaaga tctcccattg ttttccggca      1380
     acccagaaga gtggccgatc tggatcagta attttcaacg gtcgacagca acgtgtggct      1440
     tctctctgga tgaaaatttg attcgcttac agcgtagttt gagaagcgca gctttagacg      1500
     cagtccgcag tcgattgctt tgcccgtcaa gcgttcctca tgttattaaa acgttggaga      1560
     tgcgttatgg tcgtccggag acattgatcc gtgttatgac ggagcgcatt aagcatttac      1620
     ctcctccgag gatgaacgat ctggacagca tcatcgagtt tggattaacg gtagataacc      1680
     tggtagaaca tttgagaaat gcagggcagc aagcgcattt atcaaatcca tcccttttac      1740
     acgatttggt catcaagtta cctgtagact atcgtctgaa atggtcagca tataagagtt      1800
     caacatacaa cgcggatcta ggagttttcg gtcgcttcat gtcgagcttg gttgaattag      1860
     cgtatgaggt ggcggacgag tttccaactc aacgtaacga taaagtgcag aagccaaaag      1920
     cgaaagaacg tatgtttgtg cagactcacg cagagtacaa cgattcaaaa tcgaaacctg      1980
     tacccgctga aaaagcaagt aggaagcctt gtcctatttg caaattggat ggacacaaaa      2040
     caccagattg catcaggttc aaagggatga gcatcgacaa tcgatggaag gtggtagatc      2100
     agcagggatt atgcaggacg tgccttaacc aacacgggaa gtggccttgc agaacctgga      2160
     aaggatgtgg aatcagtgaa tgcacttcga gacatcacac tttgttgcac tccttcagtc      2220
     ccacagtacg tgctgctgtt tccacgagtc atttaagtgg atcgcaagag aaccatggcc      2280
     caatgtttag gatcttacca gtgacgttgt ttggtgaaaa gtgccaagtg aatatctacg      2340
     ctttcgtcga cgaaggatcc gagataacgc ttctcgaaga ttcaattgcg gagcagttag      2400
     gactatcggg tcagaatgaa gctttaaatc tacaatggac aggagatata aagcgtaacg      2460
     agtcgaattc acgccgagtc aatgcagaag ttgcgggctt tgggttgtgt aagaaattca      2520
     agttgatcaa tgcccgcaca gtgagcagtt tatcgctacc agcgcaaacg atgaaatacc      2580
     agcaattggc caatatctac cctcatttgc aagggttacc tctacaagac tacgagcaag      2640
     cttctccaaa gctcttgata ggtcttgaca acctgaaact tactgttccc ctgaaaatcc      2700
     gcgaaggagg ctggaaagaa ccaatcgctg caaaatgccg ccttgggtgg agcctctacg      2760
     gaggtggttc ttcgacatcg aaggcggtag tatgtgggtt tcacgttgga ggatggacca      2820
     attcagagca ggagctaact cagttagtac gcgactatat cacgctagat aatgtagtcg      2880
     tatcgcgccc gttcacaccg ctggaatcgg acgacgagaa acgagctaga atgttgctgg      2940
     agtctactac tcaaagagtc gaaggaggct tcgaaacggg attgctgtgg agaaggaata      3000
     acgttagatt tccggagagc ttcggaatgg catataaccg tttgcgttcc ctggagagaa      3060
     aatttgataa aacaccaggt cttttcgaaa gagttcgtca gcagattcag gaatacgaac      3120
     tgaatggata tgcgtataag gcaaccgcgg aagagttgtc tggtaccagt tctggtcggt      3180
     attggtactt acccttgggg attgttataa atccgaagaa gcccaacaaa ttaagaatga      3240
     tttgggacgc agctgctact gttgatggaa tatctctgaa ttcagaattg ttgaaaggac      3300
     cagatttttt aacaagcctt ccgacagtta ttggtaaatt taggctatat caatacgctc      3360
     tagccggaga cataaaagag atgtttcatc gcttttccat tcgtcctgaa gaccggcagt      3420
     atctcaggtt tctattcaga gaccatccca gccaagaacc agtggtttat gttatggatg      3480
     tagccatttt cggggcaact tgttctccca gttgtgctca gtacataaag aatctgaatg      3540
     ctgcagaatt cgagtcggac tttccaagag cagtgaacgc cattatctac cgccattatg      3600
     tagacgacta tttggacagt tttggaacac aagaagaagc catcaaggtc gggagtgaag      3660
     tgaagcagat tcatgcagcc ggaggttttg aaatccgaaa ttttctatcc aacgatccgg      3720
     tcattgcgat gaaggtcggt gataagtcgc cagctgaaga gagagatatt cgaactgaaa      3780
     aaggtgatgg agatgctgga cgtgctgagt cagtattagg tatgcggtgg atacctaaca      3840
     acgatgtctt cacctacacc gtgtccttgc gagataattt gaagcacgtt ttgaaggagt      3900
     cacacatccc cacgaagaga gaagtgctac ggacggttat gagtttcttc gatccaatgg      3960
     gacttataac cttctttttg atacacggga gagtcttgat gcaagatatt tgggccgcag      4020
     gcatcgattg ggataatgaa atcaacgaaa gaatgaggtg tcagtggaga aggtggatcg      4080
     aactcgttcc acagttgacc gatctacaag tgccacggtg ctattttccg aatgcgattg      4140
     agcaaacgta ctcctcctta caagtccatg tatttgtaga tgccagcaaa tctgcatatg      4200
     cgtgtactgt gtacttccgg gttgaaacgg cagaaggtcc gttagtgagt ttggtagctg      4260
     cccgagcgaa agtagcaccc ctcaaaatgt taactatacc aagattagaa ctccaagcgg      4320
     ctgtattagg cgctcggctt ctcgacagtg taatcacaat gcacaatctt ccagttcaaa      4380
     aacgagtact ctggtcagat tcaagcactg tacttgcatg gatacggtcg gatcaacgta      4440
     gatatcacca atatgttgga tttcgagttg gggaaatttt aacaacgact gacgtcaacg      4500
     aatggaggaa aattgattct gccttaaatg taacagacga tgctaccaaa tggggctccg      4560
     gaacagtcat cgcttcagac agtcgctggt tctgcggacc ggatttcttg agacaaccag      4620
     aagaatgttg gcctggtaac gaaatgacaa cgcatactac agaagaagaa cttgtttctt      4680
     gtaatataca ctgtttaacg cctgcttctt tggtcgatgt cacgagattt agtcgatggg      4740
     aaagactcct tagaactata gcatacgttc tgagatttct ggacaattgt cgctgtttgc      4800
     aacgaagcag aacaacgcat catgttattc tgcatcagag agagctggaa cgtgcagaga      4860
     cattgttatg gaaacaagcg caagaagagt atttcggttc agaagttgcg atactggaag      4920
     cttccaaagg tggacctgaa aatcgtcaca aactgcttca aaaatctagt gtattataca      4980
     agctttggcc ttttatggat gaatggggag tagtacggaa acgcaatcgg ctggagaatg      5040
     ctgaatgcat tcagcatggc accaaatacc cagtcatctt accacgtcaa catcgtatca      5100
     cctttctcat tgttgattca taccatcgcc gttttcgaca cggtaataga gaaaccatcg      5160
     tgaacgaaat aaggcaagtc tacgaaatac cgaagttaag atccttggtg gcaaaagttg      5220
     ctaaagattg tacttggtgt aaagtattct acgcttctcc ttgcactccg cctatggcac      5280
     ctttacctaa agtacgagta acaccttatg tacgaccgtt cacgtacgta ggtctcgact      5340
     actttgggcc aatcctcata agatgcggca gaagcgttgt taaaaggtgg gtagcattat      5400
     tcacatgctt aaccattcgt gcggttcatt tagaggtcgc gcattcgctt tcaacggaat      5460
     cctgtgttat ggcggtgaga aggttcgttg ctcgccgtgg agcaccactg gaaatattca      5520
     gtgataacgg aactaatttc catggggcaa acaatcaact gcgacaagaa ttggccgagc      5580
     ggagcaagca tctggctaca gtattcacaa atactcaaac gagatggacc ttcaatcccc      5640
     cgagcgctcc tcacatggga ggagcttggg aaaggatggt tcgctcagtt aaagcggcta      5700
     ttggaactat attggaagac aagcgcagac caaccgatga gattttggaa acagttattg      5760
     tggaagctga gtcaatgatt aacacccgcc cactgacgta cgttccgttg gagtctgccg      5820
     accaggaagc attgacacct aaccatttca tttttggcaa ttccaacgga gcgaagcaac      5880
     ccccaataga accagtggac tatcgtacaa cattgcgcag cggatggaaa caagcacagc      5940
     atctatcaga tgcaatatgg agccgatgga ttaaggaata tttgccagta atttcaagga      6000
     gatccaaatg gttcgaggaa gtgaaggagt tagaagaagg agatttggtt ctggtgataa      6060
     acggttcagt gcggaatcaa tggaccagag gaagaattga aaaggtaata ccaggacggg      6120
     atggtcgagt tcgacaagct ctggtacgta ccaggaccgg tataatgagg agaccatcag      6180
     tgaaactggc attgcttgat gttttggatg aacgtaaacc aactgttagg gaaggtttac      6240
     gggcggggga g                                                           6251
//
ID   BEL-35_AA-LTR repbase;    DNA;    INV; 463 BP.
XX
AC   supercont1.126;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_AA_;
KW   BEL-35_AA-I; BEL-35_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-463
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.126; Positions 1383578 1383116.
XX
SQ   Sequence 463 BP; 175 A; 71 C; 76 G; 141 T; 0 other;
     tgtaacatca aacgcccctc ggctcaaaaa ttaccacagg acaagggaga acaataagct        60
     gttgggagac aatggaaaat gtcatactga cttttgatga ataggagtta gattatacga       120
     attcgatcgg taaaaccata gcttaaatct tgagttcttg aacaagttat agttattcgc       180
     tgtatcttaa atcttatatt taccacgcta tgtaagtgaa tttggaagat taaaatgaat       240
     ttatctaatt atttacctaa cttctctaaa cagtatatag cagtatgaat tgtatcggcc       300
     ttaaatctaa agaactacta cgattgtaac tgaaaaattt gtaagtatta tgattgtaaa       360
     ctaaaaaaca aatgaaatga aatctattaa aaacttacag ctaaagctga tctcaacaaa       420
     cgaatcgtat ttcttgtggg actgctaaga aagttcagct aca                         463
//
ID   BEL-35_AnFu-I repbase;    DNA;    INV; 3878 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-35_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3878
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 684-684 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..3855
FT                 /product="BEL-35_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 (partial), integrase, and DUF5641."
FT                 /translation="MTRTPRTPRTPAVKSVGEPGWVDAIIAAKPNIHMRDL
FT                 ACEELGRIMDNILQAKNEGKALTAVQCKVYGKKADSALEEHNKHYAEIIKL
FT                 VVGDSAVHDAKYKETIKLHEEVMLELESASEAFVAKSASSQAMVPGPSVPP
FT                 VIVHAPLPRPIPTFSGKYEEWERFKTIFRDIVDKSGDNPRIKLYHLEKALS
FT                 GDAAKVIDQKTINDGNYERAWQLLSDRYENKRRMVDLHISGLFSLKKLTEE
FT                 NYVGLRNLVESVESHVENLKYLGEDFAGLSCTMVIYLISNSLDIETKKLWE
FT                 ASIPKGELPNYEKTLCFLKERVSVLERCQANVAVGQKGRFVEKRPNYNENS
FT                 PMKRNAASTSFVENVSSEKVCDLCKGLHGTNKCPEIVLLDGKQRAQYVKSK
FT                 RLCLICLKPGHWRNRCKSRVKCSKCEGAHNTILHYDNNSVKSEQVSSEPER
FT                 VSASQHADNAANSGSIVLLQTVLLYAESANKELLLCRALLDSGSQISCVTE
FT                 ALAVKLGVNLVNVNVPIKGIGNIDSPVRQKCSFTVKSRCTDFSMGITCFVY
FT                 REITGKMPSVKFDISSWNLPDKALLADPTFNDPGSVDILLGMDCLSELTIS
FT                 GSVKRANTLPMITETRLGWVIGGRVADLYKESEMFTNVSTNDRLGSIMQRF
FT                 WEIEDVTSERSVKSEDEMCETHFLETHYRESTGRYVGHCRVVEESKDDPSS
FT                 RKWYLPHHAVLNPTKSTTKCRVVFDASAKVNGRSLNDVMRSNFLPSEPMED
FT                 LRDEEIPDLRKVVTCSVTVPLDILPILVKFESFRKTQRIVAYVVRFKQNAK
FT                 RRKGERINDPKPTIAELRESTRWIVRAIQHHELSDVVSAVKQGKPVQRYQN
FT                 LNLFLDGELLRVGGRIRKSDLSYDNKHQLLLPHRSIITKRLIAAIHRENLH
FT                 IGPSGVISILRQQFWIVNARSTVRKVLHECIVCFRSSPSTMDQQMGDLPTC
FT                 RVTAAPTFQRVGLDFAGPIMLKSGIRRVTATKGYVCLFVCMVTKAIHLEAV
FT                 ENLSTGAFLAALRRFVSRRGIPEEIYSDNATNFVGAKHELRELYEMFKDET
FT                 SKQGIFQFCQEKEVTWKMIPPNAPHFGGIWEAGVKSVKSVLKRVYKSASLT
FT                 ITDFYTLLCQIEAMLNSRPLYALSNDPHDLDCLTPAHFTIDRPLIGVAEPS
FT                 YLDLPENRLDKWQRLQQLRQHFWRRWQKEYLSELQTRHKWTKVKDNIKEGA
FT                 LVLMKEDNMPPQFWKLGRISKVYPGDDGLIRVVDVKTKYGLFKRPIHKLAP
FT                 LPMQDP"
XX
SQ   Sequence 3878 BP; 1166 A; 721 C; 969 G; 1022 T; 0 other;
     tggtccttcg aaccggatct taggtagctg aatatcaata gagatcgctt catcatgact        60
     cgcacacctc gaacgccacg cacaccagcc gtgaaatcgg tcggagaacc gggctgggtg       120
     gatgcaatta ttgcagcgaa gccaaacatt cacatgcgtg atcttgcatg tgaggagtta       180
     ggtcgtataa tggacaatat tttgcaggcg aagaatgagg gaaaggcgct gaccgcggta       240
     cagtgcaaag tgtacgggaa aaaggcagat agtgcattgg aagagcataa caagcattat       300
     gctgaaatta ttaagcttgt tgttggtgat agtgcagtgc atgacgccaa gtataaggaa       360
     actattaaat tgcatgagga ggtgatgttg gaattagaga gtgcatctga agcctttgtg       420
     gcaaagtcag catcatctca agcaatggtt ccaggtccca gtgtcccacc agtgattgtg       480
     catgccccat tgcctcgccc catacctacg tttagtggca agtatgagga atgggagcga       540
     ttcaagacaa tttttagaga cattgtggac aaaagtggtg acaatccgcg tataaaactt       600
     tatcaccttg aaaaggcctt gagcggtgat gcggccaagg taattgatca aaagacaata       660
     aatgacggta actacgaacg cgcgtggcaa ctcttatccg atcgctatga gaataagcgt       720
     cgtatggtgg acctacatat tagtggactg tttagtttaa agaaattaac cgaagagaac       780
     tatgtcggtc tgcgtaattt agtggaatca gtggagagcc acgtggaaaa cctgaagtat       840
     ttaggtgaag attttgccgg gctttcttgt acgatggtga tatatctaat atctaattcg       900
     ttggatatcg agaccaagaa gttatgggaa gctagcatcc ctaaaggtga actaccgaat       960
     tacgaaaaaa ccttgtgctt cctaaaagaa agagtgtcgg tgttagaaag gtgccaagca      1020
     aatgttgcag ttggacaaaa gggtcgtttc gttgaaaaaa ggccaaatta caacgaaaat      1080
     tcacctatga aacgaaatgc ggcttcaact tcgttcgttg aaaatgtgtc tagtgaaaag      1140
     gtttgtgatt tgtgcaaggg actacatgga acgaacaaat gtccggaaat cgttttgtta      1200
     gacggaaaac aacgtgcgca atacgtaaaa tcaaaacggc tttgtttgat ttgcttgaaa      1260
     ccaggacatt ggcgaaaccg ttgcaaatcg cgtgtgaagt gtagtaagtg cgaaggagca      1320
     cacaacacaa ttttacatta tgacaataac tcggtgaagt cagaacaagt ttcaagtgaa      1380
     cccgaaagag tgagcgcaag ccagcatgct gataatgccg ctaactcggg gagtattgtt      1440
     ctattgcaaa ctgttctgct ttacgcggaa tcagcgaaca aggagttgtt gttgtgccgt      1500
     gcgctgttgg atagtggatc gcagatcagt tgtgttacgg aagcgcttgc ggtgaaatta      1560
     ggcgtaaatt tggtgaatgt gaacgtgcca ataaaaggaa ttggaaacat tgattcgcct      1620
     gtaaggcaaa agtgttcctt tactgtgaaa tcccgatgca ccgatttttc tatgggtatc      1680
     acgtgttttg tgtatcgcga aattactggt aaaatgccat ctgttaaatt cgatattagt      1740
     tcgtggaact tgcctgataa agcgttgttg gccgatccaa catttaacga tccaggcagt      1800
     gtggacattt tgctgggaat ggattgtctc tcggaattaa caatatcagg gtccgtgaaa      1860
     agagcgaaca cactaccgat gatcaccgaa acccgtcttg gatgggtaat aggaggacgt      1920
     gttgcagatt tatacaagga aagtgaaatg tttaccaatg tatcgacaaa tgatcgttta      1980
     ggatcaataa tgcaaaggtt ttgggaaata gaagacgtta caagtgagcg ttctgtgaaa      2040
     tctgaggacg aaatgtgcga aacccatttt ctcgaaacac actatcgcga atcaacaggc      2100
     aggtatgttg gtcactgcag agtggtagag gaaagtaagg atgatccatc atcaaggaag      2160
     tggtatctcc cacatcatgc tgtcctcaac ccgacaaaaa gcaccacaaa atgccgtgtg      2220
     gtttttgatg cttcagcgaa ggtcaacgga aggtcattaa atgatgttat gagaagtaat      2280
     tttttgccat cagaacccat ggaggatcta cgcgatgaag agattcctga tctacgcaag      2340
     gtggttacct gcagtgtcac agtaccgctt gatattcttc cgatcctggt aaaatttgaa      2400
     tcttttcgaa agacacaaag aatagtagca tatgttgtac gattcaaaca aaatgccaaa      2460
     cgacgtaagg gtgaacgcat taatgaccca aagcctacaa ttgctgagtt gcgagaatca      2520
     acgcgttgga ttgtaagagc tattcagcat catgagttgt cggatgtagt gtcggcagta      2580
     aagcaaggta aacctgtgca acgataccag aatctgaatc tcttcttgga tggtgagctg      2640
     ctgagagttg gaggtcgtat acgcaagtca gatctgtcgt atgacaataa acatcagctg      2700
     ttactgccac atcgtagcat cataactaag cgtttgattg cagcaattca ccgtgaaaat      2760
     ctacacatcg gcccgtctgg agtgatttct attttgcgtc agcaattctg gattgtgaat      2820
     gctagatcaa cggttcgaaa ggtgctgcac gaatgcattg tttgcttcag aagtagtcca      2880
     agtactatgg atcaacaaat gggtgatcta cctacctgtc gagtaacagc tgctcctacc      2940
     tttcaacgtg taggtttgga tttcgctggg ccaattatgt tgaaatcagg tatccgtcgt      3000
     gttactgcta cgaaaggata cgtatgtcta tttgtgtgta tggtcacaaa ggcgattcat      3060
     ttggaggctg tagagaatct ttcaactggc gcttttcttg ctgccttgag acgatttgta      3120
     tccagacgag gaatacctga agaaatctac agtgataatg ctactaattt tgttggagca      3180
     aaacatgagc ttcgtgagtt atatgaaatg ttcaaggatg aaacatcgaa acaaggcatt      3240
     ttccagttct gccaagagaa agaagttacg tggaaaatga tcccacctaa tgctcctcat      3300
     tttggaggga tttgggaagc tggcgtaaaa agtgtcaaaa gcgtattgaa aagagtttat      3360
     aagtctgctt cgttaactat aaccgacttc tacacgcttc tgtgtcaaat tgaagctatg      3420
     ttaaactcgc gaccattata cgccctttca aacgatccac atgatctgga ctgccttaca      3480
     cctgcacatt ttacgatcga tcgtccattg attggagttg cggaaccgtc atatttggac      3540
     ctgccagaga accgtttaga caagtggcag aggcttcagc aacttcggca acatttttgg      3600
     agacgatggc agaaggagta tctgagtgag ttgcagacca ggcataagtg gaccaaagtg      3660
     aaggataata tcaaagaagg agcattggta ttaatgaagg aagacaacat gcccccgcag      3720
     ttttggaaat taggacgaat ttctaaagtg tatccaggcg atgacgggtt gatacgagtg      3780
     gtagatgtga agacgaagta cggtttattt aaacgtccga tacacaagtt agcgcctctt      3840
     cccatgcagg atccctaata atattcgggc ggggagga                              3878
//
ID   BEL-35_AnFu-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-311
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 738-738 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 311 BP; 80 A; 53 C; 80 G; 97 T; 1 other;
     tgttccgttt catcggaagt tttktttttg ttttttgttt tttttttctc tctgttgtgg        60
     tgtgtcgttc ggtacctgcg gataaacagg aacaaaaaag ggtccttttt atacaaggcg       120
     gtaagcggta taacggacgg ttccgcgaaa tgcacgccac agcggaggga gtacaatttt       180
     ggggtttgca cacgggtgca aaccagtacg tgatcgatag cggaggagtt aagtcgcaag       240
     aagcgaaaat aaaatagttc ttgtgcgtaa ttagatgttc agtgccttat taaatccact       300
     gagatatcac a                                                            311
//
ID   BEL-35_CQ-I repbase;    DNA;    INV; 2976 BP.
XX
AC   AAWU01003719;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_CQ_;
KW   BEL-35_CQ-LTR; BEL-35_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2976
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 223-223 (2011).
XX
DR   GenBank; AAWU01003719; Positions   68176   71151.
XX
CC   'AACAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           334..2976
FT                 /product="BEL-35_CQ-I_1p"
FT                 /translation="MWRSLLKLHTEPESEEEEVEEKKPVVEVLVPSPVKPL
FT                 TPKKLWKKKKAKMADSEIKALSKKRSLVKGKLTRVLHAVQPSAQPGAQADA
FT                 QPREADVAPPQLRVHQRNVEKYYGECHEIHDKILDLVETDEVSKQQEEKWL
FT                 EFEQLYNRTLVALEMLLTAHERPAQVVLPAVQAAQQVIIHQQALRAPLPTF
FT                 DGRYENWSKFKAMFQDLMRNSSDSDAVKLYHLDKALVGEAEGKIDLRTIQD
FT                 NNYQGAWKELEEQYENTRLIIDLHIQGILQLKKMDKRSSTELRDVVERCSR
FT                 HVEGLRFHKQELLGVSELIVVNILAAALDRETRELWEATIEKGELPTYQAT
FT                 FDFLRKRCHILERCELSDPEASAVKPTVSKMPSATKPSVNVFTAATTTSEV
FT                 VCELCGGNHLNYKCSAFCSMSVPQRLEKVREARACYNCLRTGHLVRKCPSE
FT                 RTCKCGERHHNLLHKDSPKEQASPKSEAAPKPPPATEQATNGSSNDNADAS
FT                 EEQTTSCCNSGLLQTSRPVLLQTAVISVVDKHGRLHPCRALLDSGSQAHIL
FT                 SAAMARKLELPLTKCNVMLIGANAVKTPARSSVILNLSSRYTNFRDSISCL
FT                 ISEKPTGIIPSVRIDTSRWKIPSGVRLADPQFFEPNDIDLVIASNYVWDLL
FT                 RSDKVKLLNGAVTLRETDLGWIVTGTYDPLDQVSLPIVHSNNVRLDILEDA
FT                 VEELVSVEELTDSTPPSAENFNKLVSPTHRSDESSRCVIQLPFRNTVDDQS
FT                 QALRRFTQLERSRSDPPGSKSQYSVITDNPAWADPLPEWMMMEWLECPRSL
FT                 NELKDITTPLRGVESDAVRSEDKLPPKTVELIDDPAPSCGGLKLAIVEIPS
FT                 GERTSYSGSFVTKTCGLKEFQLRSRAGE"
XX
SQ   Sequence 2976 BP; 767 A; 804 C; 850 G; 555 T; 0 other;
     tttggtccat tcgtaccgga catttggaca ctcgaccgtc ggatccgcga gtgaagtgtt        60
     cagtggattc cggaaaatcg tgcgagcgga agaacacaac cggaagaaga tttcgagtgt       120
     gtgatctgga agtgagaaaa gatccttccg gaaggcgact ccgtggcctg caacagcgga       180
     aacagtggcg gcaagagccc gcaaaagaag tgccagaaag tttcgtggag tgagtgagca       240
     gtgaaaaaac gcagcgacgc cattttgtag tggttcccac gagtggaaca atccgtagag       300
     tgcaggcggc acaagcgttg ctggtctgac tctatgtggc ggtcgctcct gaagctgcac       360
     acggaaccgg aaagcgaaga agaagaagtt gaggagaaga aacccgtcgt cgaagtgcta       420
     gtgccgtccc cagtgaaacc gctgacgccg aagaagctgt ggaagaaaaa gaaggcaaag       480
     atggcggaca gtgaaatcaa ggcgctttcg aagaagcgaa gcttggtgaa gggaaagctc       540
     acgcgagttt tgcatgccgt gcaaccaagc gcccagccag gtgcccaagc agacgcccaa       600
     ccacgggagg ccgacgtggc cccgccgcag ctgagagtcc atcagcgcaa cgtggagaaa       660
     tactacggtg agtgtcacga aattcacgac aagattttgg acctggtgga gacagatgag       720
     gtgtccaaac agcaggagga aaagtggttg gagttcgagc agctctacaa ccgaacgctg       780
     gtcgcgttgg aaatgctgct gaccgcgcat gaaagacctg cccaggttgt gcttccggct       840
     gtccaagccg cacaacaggt cattatccac cagcaagcgt tgcgtgctcc actcccaacg       900
     ttcgacggac gttacgagaa ctggtcaaag ttcaaggcca tgttccagga cttgatgcgc       960
     aattcgtccg attccgatgc cgtcaagctg taccacctgg acaaggcgct cgttggtgaa      1020
     gcggaaggga agatcgactt acgaaccatc caggataata actaccaggg agcgtggaag      1080
     gaactggagg agcagtacga gaacacgcgg ctgatcatcg atctccacat ccaaggcatc      1140
     ttgcagctga aaaagatgga caagcggtca tcgacggagt tgcgagatgt cgtcgagcgg      1200
     tgttccaggc acgtcgaagg tctacgcttc cacaagcaag agctgttggg agtgtcggag      1260
     ctcatcgtgg tcaacatcct cgcagctgcc ctggaccgcg agacacgaga gctctgggaa      1320
     gcgacgattg agaagggtga gctaccgaca tatcaagcga cctttgactt cttgaggaag      1380
     cgatgccaca ttctcgagcg atgtgagctg tccgacccag aggcatctgc tgtcaagccg      1440
     acagtctcta agatgccatc tgccacgaaa ccttcggtga atgtgttcac tgcggccacg      1500
     accacaagcg aggtggtgtg cgagctttgc ggtggcaacc atctgaatta caagtgcagt      1560
     gccttctgta gcatgtcagt cccacagagg ctggagaagg tgagagaggc acgagcttgc      1620
     tacaactgcc tgagaaccgg ccatctggtc aggaagtgtc cctccgagag gacgtgtaag      1680
     tgtggtgaga ggcatcacaa cctactccac aaggactcac cgaaagaaca agcatcgccg      1740
     aagtctgagg ctgcacccaa gcctccacca gccactgaac aagcgaccaa tggttccagc      1800
     aacgataacg ccgacgccag cgaggagcag acgacgtcgt gctgtaacag cgggctgctg      1860
     caaacctccc gacctgtgct gttgcagaca gcagtcatta gcgtggtgga caagcacggt      1920
     cgactgcacc cgtgtcgcgc actcctggat tccggatcgc aagcccacat cctttcagcg      1980
     gcgatggcac gtaagctcga gctaccgctg acgaagtgca acgtgatgct gattggagca      2040
     aacgccgtca agacaccggc gaggagcagc gtcatcctga acctctcttc aagatacacc      2100
     aacttccggg atagcatttc ctgtcttatc tcggagaagc caaccgggat tattccatcc      2160
     gtgagaattg acacgtctag atggaaaatt ccaagtggcg ttcgcctcgc agatccgcag      2220
     ttcttcgaac ccaacgacat tgacctggtg attgcgtcca actacgtgtg ggatctgctg      2280
     aggtcggaca aggtgaagct gctcaacggc gccgtcacgc tccgagagac agatctggga      2340
     tggatagtca cgggcaccta tgacccgctc gaccaggtga gtcttcctat cgtccattcc      2400
     aataatgtgc gcctggatat cctggaagat gccgtagaag aattagtatc agttgaagag      2460
     ctgacagact caacaccccc ctccgccgag aatttcaaca agcttgtctc accaacccac      2520
     cgcagcgacg agagcagccg ctgcgttatt caacttccgt tcagaaatac cgtcgacgac      2580
     cagtcccaag ccttgagaag attcacccag cttgaacgca gtcgttccga tccacctggc      2640
     tcgaaatcac agtactctgt catcaccgac aaccccgcct gggcagaccc actgccagaa      2700
     tggatgatga tggagtggct cgaatgcccg agatcgttga acgagctcaa agacatcacc      2760
     accccgctcc gtggtgttga gtcggacgcc gtccgtagcg aagacaagct tccaccaaaa      2820
     accgttgagc tgatcgacga tcctgcaccg tcctgcggcg gcttaaagct ggccatcgtc      2880
     gaaataccat ccggggagcg aaccagttac tccgggtcat ttgtgacgaa gacttgcggt      2940
     ttgaaggagt ttcagcttcg cagccgggcg ggagaa                                2976
//
ID   BEL-35_CQ-LTR repbase;    DNA;    INV; 368 BP.
XX
AC   AAWU01003719;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_CQ_;
KW   BEL-35_CQ-I; BEL-35_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 224-224 (2011).
XX
DR   GenBank; AAWU01003719; Positions   67808   68175.
XX
SQ   Sequence 368 BP; 116 A; 86 C; 88 G; 78 T; 0 other;
     tgttcgccat cgcgtccgtt tccgaggctc ttcaagcgta aaataaaaat ttctgacaat        60
     tggcaacact ggttgctgcg attggcaaac ccccgcgccg ctgtcaaaac gtcaaaggcg       120
     aaaagcaacg gcaacctgat cgtcagattt agcgcgaacg aaaagcgcgc gcaaagaagg       180
     ggagaaaaag gaaaccgaac caaaattcat tccgttcgca aactttgttc agtacagatg       240
     taaataaatc ggtcgtttta gaaatttgtt agagaaaacg agtgtttcac tgccgtgcca       300
     gaacgtggtt tacagtcccg cgaaaataga atcaaaatcg tcccgggttg aggcaatcgg       360
     ccgcaaca                                                                368
//
ID   BEL-35_DTa-I repbase;    DNA;    INV; 5266 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5266
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5646-5646 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 5266 BP; 1488 A; 1222 C; 1160 G; 1384 T; 12 other;
     tttggcgmac aacgtggagc tgtgtgatta atttcactta agttggattt ttcgtcgttg        60
     gatcgctcaa tcgtcatccc ccttttcgtc gtcgcttcgc acagttgcca tttaccgttg       120
     ttcttcgcct cgctggaagt ttgcctggaa acacacgccg ttcgtttaca gttggtttat       180
     tggaawtttt cactcgcaca caaagctgga agtcgtcgtc gctggctcaa ctggaacttc       240
     gctggataac caatwagtat tatattttcg tcgccaacgg tacttgaagg tatctggtct       300
     attttgtttc actaaaacwa gcggaacaat tctattgcaa caatatgagt ctcgatcagc       360
     taaaacagca gcgtgtaaac attcgcagga acatttctcg gatcggtagc aagctacagg       420
     gtacacatga ggaagaaaat tcgtcggata tgtctacggg tcagctaaac tgctggcttg       480
     gaatcctgga ggcatatttc aawcagctga tggcagtcca aacaaaaata gaggagcttc       540
     acccttcgga ttgaagattt atatgtctcm gtcaaagttg ggattaaaga gcagcttgga       600
     gaagattttc agaactccac tgtattcgaa aaggcatcaa gtcattccct tgtatcgtcg       660
     ttgaaactac ctgccatcga gctccccaaa tttgacggga aagtgataga tcaacatgca       720
     ggcttatcga atattgaaaa attcaatcag cttatcagtt gcttatctgg agcagcttta       780
     gaaacagtaa aggcttttca aattactccc gataactacc caaaggctct tgagcgcctt       840
     aaggagcgct atgataaccc cactctggta tttttagata gcatatcatc cttgttcaac       900
     ctgccagccg ttaccaaacc aaatagtaac caacttcgta gcctaataga taatgcgccg       960
     ctctatataa ctcgctgagg tcattgggct ctgaatccga tattgctcag tgctaatttc      1020
     aattataatg cagaaagttg atccgctcac caggaagaaa tggaacgagt cattaagctt      1080
     tgcgggctta cccaaatgga aggagtgtat agcactaatt gataggcatt gtaaatacct      1140
     ggaaacctcc gaccagaccg aaactagtac gaaagcgcac caggcagtta gtggcggtag      1200
     atatcgctat cagcaaggac aacgtctagg ggcaagcttt aattgtacca ctcagacctg      1260
     tctctattgt tccgatgcta atcataaaat atttagctgc ccccaattca aaactctaac      1320
     agccctgcag cggtatgagg ttgctaaaag acaattgctc tgtctaaact gcttaggcaa      1380
     gggacatcat ctgtctaagt gtccttctag cctgaaatgt cgtttgtgct ctcgatcaca      1440
     tcacaccctg cttcatcgtg agagtgcaaa tttagctcag caaacccagt cggaaccacc      1500
     atccagcgtc gacgttgttt ctcacactca cacaggctat tcacatgacc aagtcatctt      1560
     ggccacggcc atggttttgg taagggatgc aaacggtagt tatagaattg gtcgagcatt      1620
     acttgattca tgctcgcaag tcaactttct ttctgatagt ttcgctcaag cccttcggtt      1680
     accacggagt aacagcaata taaatatctg cagcatcggg gacagccaaa ctcggataag      1740
     acaactggca acaacagcaa ttaagtctcg gcttaacaat ttcgaacttg cgcttgaatt      1800
     ctgtgtcact aagcatatcg cctatcagcc agatgccgat atagacacct catcttggaa      1860
     ttggcctcga aatgctccac tagcagatga tacattctat agaactcgcc caatagattt      1920
     gctgttagga actgaagcat ttttcgacat catctcagtc ggacaaatca aacttggtcc      1980
     tagccttcct accttacaga aaaccttgtt tggatgggtt gtcactggtc gctgtaaacg      2040
     ggctagtccg acaacatcgc actgttattc tcttacatta gaggaatcga ttaacaaaaa      2100
     cctggaaaaa ctttggcagt tggatgaagt ggaaagggca gacaaggtct tccccgaaca      2160
     tcgtagttgt gagcaagcct atctgaaaac agtacaccag gaggcgaatg gtagagtagt      2220
     cgcacagctg ccgttcaagg atgatccttc aatgttgggc aagtcctacg acacagctcg      2280
     tcgtagattt gaatcacttg agcgtcgttt aaagggatca cctgaagtca aggctgcgta      2340
     cgtggatttt atgcgagagt acgaagagct caatcattta acactggttc ctaagcccag      2400
     attagatgag cctcacttct atatccccca ccactgcgta ttcaaaccaa gtagtaccac      2460
     aactaaattg agagttgttt tcgacgcgtc gtgtaagact tccactggag tatcgttgaa      2520
     tgacctactt atggtgggac caactataca gagtgacttg tacacattgc ttattcgctt      2580
     taggaccttc aaatatgcca ttaccgccga tgttgtcaag atgttcagac aggttttgat      2640
     tgattcgcca catcgcaaat ttcagtatat actttggaga gactcaccag aaaaggagct      2700
     gaaaacgtat caattgaaca ccgttaccta cggtacagcg tctgcgtcgt atcttgccat      2760
     ccgcagcatg ttttatctgg ccgacttgta cggagctaat aataaggctg gctcacaagc      2820
     gttaaaatca tcattctatg tggacgattt cctttgtggt catgatacct tagacggact      2880
     tagggaaatt aaacgcgaag tcactgacat tttgaatagg ggtggtttcg agctaaggaa      2940
     atggcactcg aatcacaagg aattcgtgga caaccataac ttgaaacctc tgaacatcga      3000
     agacagtaca gttgcaagta cgctgggtat gaattggaac caaacagatg atgtatttct      3060
     ttttgaattc acgcctaaaa aggcagtctc ggtgactaaa cgtgccatac tttcgatttc      3120
     gtcatcactc ttcgaccctc tgggattgat ttcgccgatc accataacag caaagatttt      3180
     attacaggag ttatggttga tgaagctgag ttgggatgaa tcggttccac aaaacatcga      3240
     acatgggtgg aaatcattca tcgaatcgtt atcgtcactt caaagtctct cagtgcctag      3300
     atattgttta cagccaaata aggacggatt cgaacttcat ggatttagcg atgcctcgat      3360
     wcgtgcctat ggctgctgta tctacacacg cacgatcgat ccgaatggca aggttactgt      3420
     aagactgctt acatcgaaat gcagagtggc tccaacacga aaactgtctt tgccaaaatt      3480
     ggaattggca ggggcacatc tcttggcaaa gctgatctca agaatccgtg gaatccttac      3540
     aaatgacaaa ggtcaatcca gcggatatgg tatccagagg gtgcaccccc ttagaactag      3600
     ccgactcaat ttggttcact ggaccctctt atctacaaca accaatagaa gactggccaa      3660
     aagacaaacg aggtcagata gatcccggag tagtctcatg tgagaggcgc aaagcagcat      3720
     tcgtcgcaaa aatatatgac aaccccttgc tcaacttagc cgcaagcact agctctmatc      3780
     ttcgttgcct tcgtatcgta gcgtggatgc ttcggttcgt aaatagacca cgaaaggtag      3840
     cgtcatktga tccaacttct ccgtcgccac cagagctaaa ccgagcactc cactgcatta      3900
     tttggaatct acaagggcag tcatttcctc aggagcttcg atccttacaa aagggtgaag      3960
     aagttcgtac acaactaaag tttttaaccc cttttctaga caccatagat ggatttccgc      4020
     taataaaggt cggtggcagg ctacaacaat cgaatctgcc agaatctcaa gtacacccaa      4080
     tcttgctcag cagcaaggac gagttcgttc agcgctacat caaacatctt cwcatccgaa      4140
     attatcacgc gggtccgaag gcgttagttg ctctcattcg acttcgtttt tggattgtaa      4200
     atgctcgaga tgcagccaga cgcgttgttc gatcctgcat acattgcgtc cgttataagc      4260
     cacagctgca gcgacaaatc atgggaaatc ttccggtgga gcgtctaaca gtttcaagac      4320
     catttgcacg atgcggtgtt gacttcgctg gaccagtcaa catatacatg cgtataagag      4380
     gaaagggacc aacaaagggt tatatatgca tattcgtwtg ctttgcatca aaggccgtcc      4440
     atatcgaatt agtttcggac ctttcaacgg aggcatttgt agcggcctta aaacgcatga      4500
     ttggaagacg cggactacca accgatatat tttgtgacaa tgccacaaat tttgttgggg      4560
     cttgtaacaa attgaaggct ctccgcgaat ccttgtttaa aaccgaaact acatcagcta      4620
     ttacatcctt ttgctcaaac gaatttataa actttcgatt tattcccccc agggctccac      4680
     atttcggagg actgtgggag gccgccgtga agagtgcgaa aggactatta aatcgttcat      4740
     tcataaacgc gcgcctaacc ttcgaagaac tcagcacagt tcttatcgac gtcgaagcga      4800
     tcctaaattc gcgaccaata tcgccactat catctgatcc taacgacttg gaggccctca      4860
     ctccgggtma cttcctcgta ggaaactcgt tacgtgcgtt gcctgaagac ccgtctaaag      4920
     gcgaaaacat cgacaatttg gagcgttgga gaagagtcag cgcaataaag caacattttt      4980
     ggcaacgatg ggtcaatgag tacgtagtag agctgcagat gcgatcgagc tggaacaagg      5040
     tgatggacaa cgtagccatt ggaagcatgg tcatcgttca tgaagacaac gtgcctccac      5100
     aacgctggat aatgggtcga gtcgaagcta ctacgtcagg caaggatcgt cgagttagag      5160
     tggctgacgt tcgcacatcc aagggcatca tcaggcgtcc tatacacaag ctggccctat      5220
     tacctgtctg ttgaaattca cgagcgtaat ttcaatgggg ccggga                     5266
//
ID   BEL-35_DTa-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-322
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5660-5660 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 322 BP; 97 A; 81 C; 43 G; 101 T; 0 other;
     tgttggatca acacagaaac atttctatta aaacatatat aatcatttcc gataaactta        60
     tgaattgtat ttgaatctcg cgcgtatcat tttttgcatt tttgtattta ccattcttgc       120
     atttgtattt accattcacc attcttgtat tcaccacgag ttggccgctg cgccgacacg       180
     aaaatggtca ttattaaaat cacgatcgcc cagagcgcac acaattcgca actcgagttt       240
     tcttttaatc aaaatcgcta aattcgacct aatcacaccg cccaaatcac aaccccggca       300
     agaaaacgct cttgtcccta ca                                                322
//
ID   BEL-35_SpEx-I repbase;    DNA;    INV; 6029 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6029
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6913-6913 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           903..6026
FT                 /product="BEL-35_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADIKSLIKKRASLKAKLTQFSSYLNVVKSCEKLSDI
FT                 QLIEIEHRLHVFESLYEKYDTLQMDLEEAVDNPSEQYAEREEFEKLYYALV
FT                 ASSRQLISGARGHLVGDSASEVVSGISHIHKHSSIRLPKIELPKFSGSYHD
FT                 WLEFRDTFISIIHNNEGIDKINKLHYLRASLKGSASLIIDNLDFRSDNYDA
FT                 AWELLCSRYDNKRLLVNNHVQAIFNLNSINKESSNSLRHIVDTVNKNLRAL
FT                 STLGQPVQHWDTLVIYIMTSKLDQVTNREWEEHRNSLADPPTLNVFINFIS
FT                 SRADLLETLEESKPFKNKMDGSANTNHKAKSFAVSHASLNSKPLTCPICKE
FT                 SHFIFQCDKFRILPVQDRIKKAHTSNVCLNCLRPGHYAQKCKLGPCKYCTE
FT                 KHNTLLHTDKDSSNMQNIVLSANHFNSSKVVLLSTAVVKVSDAEGNPHDAR
FT                 VLLDNGSTANFISEDFCRKLRIHTYPIESQVKGINNQSSACSHGCTISLKS
FT                 GHSEFEVDLSCHVISKVSSSIPNTFIHTNHIRLPSNIVLADPNFYTPSSID
FT                 ILVGAEIFWAIIGTTRIPLGKNMPTLVDSKLGWLVTGVLQQPNQLAPHISS
FT                 FVTLTDDLRLGLNRFWELDSVHPQHKQTCEERSCEDIFVETTFRDADGRFV
FT                 VTIPLKESPDVLGDSYSMARRRFLSLERRLAKDPYXKQLYVSFMTEYIELG
FT                 HMSEYSHLNTTYSYSNYLPHHGVLNESKSTTKLRVVFDASARTTSGKSFND
FT                 IQMVGSPLQDDLLTILLRFRQHMIVVSADIEKMYRVTRVNDIHRPLQKILW
FT                 RTEPTHPLKTYTLNTVTYGTASAPFLATRCLMQLAKECDDPLTRSTIEHDF
FT                 YVDDYLSGSSSVEETVDKCRNVIAVLKTGKYNLRKWQSNSRXVLKAICEDQ
FT                 VASDFVTLSENESSKTLGLNWKCSTDTLYFSISVTPSNSTTKRQILSTISQ
FT                 IFDPIGLVVPCIVEAKILMQRLWLAGCSWDEPVPEEIQHIWSDFLNTLPLL
FT                 NQFKIPRWITCESVASLQLHVFTDASERAYGACVYVRSESEDGKVYIQLLT
FT                 AKSKVAPVKSTTIPRLELCAALLGSRLYVKVHQSLTLHFDEIYFWCDSTIV
FT                 LGWLSTSPTQLKTFVRHRVSEIQETTAGRSWLYVPSSLNPADLASRGLRAD
FT                 KLLSSSLWWSGPQYLLEGKSSWPQFPTSTQHDFKLPETVSSYHIDILNKTE
FT                 ILICSLFPKHSSNLYTLQRMIAYVLRFYNKCRRQPSAHGALTSSELNSSLH
FT                 FLCRLSQQESFSEEYNLLVAGKQLPAKNKLLSLSPFFDSNSNLIRVGGRLS
FT                 NSFYDYNVKHPILLSSSHIVCKLLFNMYHSRLLHPGPQLLLATIRHHFYPI
FT                 GGRNLAKKVTHECVKCCRIKASTIQPMMGNLPEQRLHLEFPFLDSGVDYAG
FT                 PIMIADRKGRGCRLVKCFICVFVCLATRAVHLELVSDLTKEAFLAAMNRFI
FT                 ARRGKPRNIFSDNGTTFVGAFNELANLLSQDLQFNAIDPGINFSFIPAYTP
FT                 HFGGLWESAVKSTKHHLRRVLGLTNLTFEEMATCLIQVEAILNSRPLTPLS
FT                 NDPSDLTPLTPAHFLIGRSLVMLPHPQIENTNISSLQRFRRIECLKQHFWN
FT                 RFSQEYILWLQERTKWQRSSGALKEGTLVVIKDKGLPPLLWLLGRITRVLP
FT                 GRDGIARVADIRTRKGVIRRAFNTICPLPVSVEDSSTGG"
XX
SQ   Sequence 6029 BP; 1691 A; 1411 C; 1150 G; 1770 T; 7 other;
     ttttggtcct tctaccgtta awttgtgaac cgacgtaaga acaaagaaaa attcaaatcg        60
     gcgacggtta tgcaagtcat ccatcagcaa taattttttc tgcggtcttc atcgtgccag       120
     catcgaattt ttcatcgtgc ctgcttcgag gtcctcatcg tgtctgcatt tggttcgtcg       180
     tgaacatcgg cacggcttca ctttagccgw cttagccgcc tacaagccaa cggacaagtc       240
     atcaagtgga actacatcag ctcagcggtt gcaaatacac actctgagat tgtcgtcgtg       300
     catcgagaaa cgtgaagaat ctcctcgtca caatcaacat aagtggtttg cgccaacaaa       360
     accgtgagat cgttccattt attccttaat catacctckc ataatsatca tcattaaccc       420
     tatttcctat acatttcatt agttttcatc gcatagtatt attgcaaatc attcaaatca       480
     tttttttctt ccaccttcat cttagactgt tacatctctt tatcacgatc atatttcatt       540
     ttcattaatt cattagtaaa cagcttgtag tgcccattgt agttattcct catttacata       600
     cgtagctagt taaaattaag ttttttttct atgtgtaaat ttttccaggg tgacacaaca       660
     attttgatgc aaaattaaac gccttaacaa aatattatag caaatcacgc ttctgcatct       720
     agctcaaata atatttacgc aacatattgc tatcaatgtt ggctaggcac ttgcttaaac       780
     gcctgtacaa tttttcatag caaattcttg atcaatcgtt tttgattgct cataaaattc       840
     agcaggctct caccttttgt tattgtcagc taccctcacg cttctttgct tcttaataaa       900
     ttatggctga cattaaaagc cttattaaaa agcgagcttc gcttaaagcc aagcttacgc       960
     aattctcttc ctacctaaac gtagtcaaat cttgtgagaa gttgagtgat attcagctca      1020
     ttgaaattga acatcgcctc catgtattcg aaagtcttta cgaaaaatac gatacgttac      1080
     agatggacct ggaggaagcg gtggacaacc ccagcgagca atatgcggaa cgcgaggaat      1140
     ttgagaagct gtattatgcc ttagttgctt cgtcacgtca gctgattagc ggtgctcgtg      1200
     ggcatctcgt gggagactcc gcgtccgagg tggtatctgg tatttcgcac atacacaaac      1260
     actcatcaat tcgtttaccc aaaatagaac tacctaaatt ctctggcagc tatcatgatt      1320
     ggttagagtt tagggacaca tttatttcca tcatacataa caatgaaggc atagataaaa      1380
     taaataaatt gcactatctt cgtgcttctt taaagggtag cgcgtctctc attattgata      1440
     atttagattt tagatcagat aattacgacg ctgcatggga gttgctctgt agtaggtatg      1500
     acaacaaaag actgcttgtc aataaccatg ttcaagccat ttttaacctg aatagcatta      1560
     acaaggagtc gagtaattca ttgcgtcata tagttgacac agtaaataaa aatttaagag      1620
     ccttgtccac tcttggtcag cctgtccagc actgggacac tttggttata tatataatga      1680
     ccagcaagct cgatcaggtg acgaatcgtg agtgggaaga gcacagaaat tccttagctg      1740
     accctccaac attaaacgtg tttattaact tcatcagtag cagagctgac ttattggaga      1800
     cactcgaaga gtctaaaccc tttaagaaca aaatggatgg ctctgctaat actaatcata      1860
     aagccaaatc gtttgcagta tcacacgcat ctttaaactc aaaaccatta acttgtccca      1920
     tttgtaaaga aagtcacttc attttccaat gcgacaagtt tagaatccta ccagtccagg      1980
     acaggatcaa gaaagctcac acttctaacg tatgtctcaa ttgtcttcga ccaggtcact      2040
     acgcacaaaa atgcaaatta ggtccttgta agtattgtac tgaaaaacac aataccttgc      2100
     tgcacacgga caaggactct tcaaatatgc aaaacatagt tctgtccgcc aatcatttta      2160
     attcatctaa ggttgtatta ctgtccacag cggtcgtgaa agtgtcagac gctgaaggca      2220
     atcctcacga tgccagggtc ttactggaca acggaagcac tgcgaacttc atatctgaag      2280
     acttctgccg caagctacgt atccacactt atcccattga atcccaagta aaaggcataa      2340
     acaaccagtc ctcagcttgt tcacatggtt gtacaatttc attaaaatca ggacatagtg      2400
     aatttgaagt agatttaagc tgtcatgtca tatcaaaggt ttcttcatca attccgaata      2460
     ccttcattca tacaaaccac atacgtttgc ctagcaacat agtccttgcc gaccctaact      2520
     tttatactcc gtcttccatc gacatcctag tcggagcgga gatattttgg gccatcatag      2580
     gcacgacacg cattccacta ggaaaaaaca tgcctacatt ggtagattcc aaattaggtt      2640
     ggctcgttac gggcgtttta cagcaaccta atcaattagc ccctcacatt tcctcctttg      2700
     ttactcttac agatgactta cggctgggcc tgaatcgctt ctgggagcta gattcagtcc      2760
     acccacaaca caaacagaca tgcgaggagc gatcctgcga agacatcttc gtagagacca      2820
     cgtttcgcga tgcggatgga cggtttgttg tcaccattcc tcttaaagaa tcacctgacg      2880
     tgttaggtga ctcatattca atggccaggc gtcgtttcct ttctcttgaa cgtcgtttgg      2940
     ccaaagaccc ctacttwaaa caactttatg tcagcttcat gacagaatat atagagttag      3000
     gccatatgtc tgagtatagt cacctcaaca ctacatattc ttactcgaac tacttgcctc      3060
     atcatggagt attgaacgaa tccaagtcta caaccaagct tagggttgtc tttgacgctt      3120
     cggctcgtac tacctcaggt aagtcgttca acgacataca aatggttggt tctcctttac      3180
     aagacgactt attaaccatc ttgcttaggt ttcgtcaaca tatgatagtt gtcagcgcag      3240
     acatcgaaaa gatgtataga gtcactcgcg tgaacgacat tcataggcct ctgcaaaaga      3300
     ttctttggag aacagagcca actcatccct taaaaacgta caccttaaac acagtgacgt      3360
     atggcaccgc ttctgcgcca ttcttggcaa ccagatgtct catgcagctt gctaaggagt      3420
     gtgatgatcc cttaacgcgc tctacaatag agcacgactt ctatgttgac gattacttgt      3480
     caggcagttc gtctgttgag gaaactgtag ataagtgtcg aaatgtcatt gctgttctta      3540
     aaacaggtaa gtacaatcta cgtaagtggc agtcaaattc acgtgakgta ctaaaggcca      3600
     tttgcgagga tcaggtcgcc tctgatttcg tcactcttag tgaaaatgaa tcwtcaaaga      3660
     ctctagggct aaactggaag tgctctacag atacactgta cttctcaatc agcgtcactc      3720
     ccagtaacag tactacaaag cgtcaaatct tatcgacaat ttcacaaata tttgacccaa      3780
     ttggcttggt tgttccttgt atcgtagagg ccaaaatatt aatgcagcgc ttgtggctgg      3840
     caggttgctc ttgggatgaa ccagttcctg aagagattca acatatctgg agtgacttct      3900
     taaacacttt acctcttttg aatcaattca aaataccccg atggatcacc tgtgaatcag      3960
     tagcttcgtt acagttgcat gtcttcactg acgcctctga aagggcatac ggtgcatgtg      4020
     tatacgttcg cagtgaatca gaagacggga aggtatacat tcaacttcta acagctaaaa      4080
     gcaaggttgc tccagtcaaa tccacaacca ttcctcgcct cgaactttgt gcagcattat      4140
     taggctcacg tctttatgtt aaggttcatc agtcactgac actacacttt gacgagatat      4200
     acttctggtg tgactcaaca atagtgttgg gctggttgtc tacatcacca acgcaattaa      4260
     agacctttgt ccgtcacaga gtttctgaga tacaggaaac tactgcggga aggtcttggc      4320
     tctacgttcc ttcttcttta aaccccgcag acctcgcttc gcgtggactc agagcggaca      4380
     aactgctatc ctcttcgttg tggtggtcag gaccccagta tcttcttgaa ggaaagtcat      4440
     cttggcctca atttcctact tcaactcaac atgactttaa acttcctgaa acagtttctt      4500
     cctaccatat tgatattctt aataaaacag aaattcttat ttgttcgtta tttcctaaac      4560
     attcatccaa tctttataca ctacaacgta tgattgcata cgtgttacga ttttataata      4620
     aatgtaggag acagccgtct gctcacggtg cactcacttc gtcagaacta aattcatctt      4680
     tgcattttct ctgcagatta tctcaacagg agtcgttctc cgaagagtat aatttgcttg      4740
     tagcaggcaa acaattacct gctaaaaata aacttctttc tttgtctcca ttctttgata      4800
     gtaactcaaa cttaatacgt gttggaggta ggttaagtaa ttcattttac gactataacg      4860
     taaaacatcc catccttttg tccagttctc atattgtttg caaactacta ttcaatatgt      4920
     accactcacg tcttttgcat ccaggacctc aactcttact tgccacgatt cgtcaccact      4980
     tctaccctat tgggggcagg aacttggcaa agaaggtcac acatgaatgc gtgaaatgtt      5040
     gcaggattaa ggcaagcact atccagccta tgatgggcaa ccttccagag caacgcttgc      5100
     acctagagtt tcccttctta gattcaggtg tcgactacgc cggacctatt atgatagctg      5160
     accgtaaggg acgagggtgt aggctcgtta aatgtttcat atgtgttttt gtgtgtctag      5220
     ctaccagagc cgtccatctc gaactggtat cggatctcac gaaggaggct ttcctggctg      5280
     ccatgaaccg ttttattgct cgacggggga aaccacgtaa cattttctct gacaacggca      5340
     caacgtttgt cggtgctttc aatgagttgg ctaacctact ctcacaagac ttacagttca      5400
     acgcaattga tccaggcatc aacttttcat ttatccctgc ctatactcct cactttggag      5460
     gactttggga gtccgcggtg aaatcaacca agcaccactt gaggagagtt ctaggtttaa      5520
     cgaatttaac gttcgaagag atggcaacat gtcttattca agtggaggct atcttaaatt      5580
     ctaggccctt aactccacta tccaacgacc cttccgacct tactccatta actccagcac      5640
     atttcctgat tggacgctca cttgttatgt tgcctcaccc acagatcgag aataccaaca      5700
     tctccagtct tcaacggttt cgacgcatag agtgcctcaa acaacacttt tggaatcgtt      5760
     tctctcagga gtacattctg tggctgcagg agagaacgaa atggcagcgg tcttccggag      5820
     cgctgaagga agggactctc gttgtcatca aagacaaagg cttaccacct ctactctggc      5880
     ttctagggcg catcactcgg gtgcttcctg gcagagacgg catcgcacga gtcgccgaca      5940
     tccgcacacg aaagggtgtc attcggcgag cgttcaacac tatatgtcct ttgcctgtgt      6000
     ctgttgaaga ctcttcaacg gggggagga                                        6029
//
ID   BEL-35_SpEx-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-35_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-277
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6942-6942 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 277 BP; 67 A; 79 C; 58 G; 73 T; 0 other;
     tgttgagtca tgcactcaat ggcctccgct gcgcgatgga ggggacaacg gacggaggcg        60
     cgcgcggcgg caacgacctg ccccgcgctg ccccgctata cgtcagtcag ctgttgcacg       120
     cctagacgca cggttgcgct cgcgctttct tatccatatt gtttaaattc atcttcttat       180
     aaccgtcatt gtaacagtct gataattatt gcacataaaa cttattatac agtccacact       240
     taaattattt atctccactg aactatcgaa cccaaca                                277
//
ID   BEL-36_AA-I repbase;    DNA;    INV; 6348 BP.
XX
AC   supercont1.382;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_AA_;
KW   BEL-36_AA-LTR; BEL-36_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6348
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.382; Positions  639666  633319.
XX
CC   Positions [5417-5977] - Integrase core
CC   'ATGGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..3620
FT                 /product="BEL-36_AA-I_3p"
FT                 /translation="MDQSNPHQNETVRHCNLCDRPDSADNLVQCDRCDQYA
FT                 HFSCAGVNDSISDPDRSFVCQSCTANDDLASVLSKRSSRSSHSSRRSARLA
FT                 LNLQLLEEENRIRMKQLEEAEKFRQLKIEAEQEMLRKKFELLQMELESEDD
FT                 DGASRKSRMSKRIVQKNTEKWVQKEGQTDGANKTATTSSNSNSQQRSVSDN
FT                 DRAQNAAAAPELVSLDQVPPTTSASSTPKSDLTTGVPSGSPAGVAIVPSER
FT                 TTVGNVRVINTTSAATRKAPLSEVIVSPQLFSNTTMISKAPVVPICSTMIE
FT                 LPPTSLQHGIYPNTTLPPPSSLVSPPDFLSIAKHAPAPTTSLLPPPGSDLP
FT                 VMPSGRDNMMSNRMIQTRYGEPMNSLPTSAPHGSGQNYSGAVYTTQVPQQS
FT                 IPSLRQPTGSVSHHQAVTISNPIPNNATVTSSLPQPSVSDGLAPNYPVATF
FT                 GPNSIQLAARQVIPRELPVFSGDPQDWPLFFSAFRNSTAVCGYGDAENLAR
FT                 LQRCLRGHALEAVRSRLLIPESVPHVIATLQRLYGRPEVIINALLKNLRSV
FT                 PSPRTDDLKTLIKFGMAVQNLVEHMIVAEQQHHLSNPMLLFELVERLPSHF
FT                 KLEWASYKYGLVDVNLATFSEFMARLVTMASDVTLHVDTGYSPNSKPEKYK
FT                 REKTSAEKLFLHHAEVNSKHEKKPQVERSSPESTSTPLVKTCSYCHRTGHK
FT                 IADCDAFKALDCDGRWKAVREKGLCRICLVPHKSWPCRSKRDCGYEDCRLR
FT                 HNVLLHSKAPKNNPVTGIQNIASTSNIAHQNHHFLKSSTLLRYVPVTLYGN
FT                 GRTVSVFAFLDDGSSSTMMDVELAEDLGVEGISEPLTLTWTSDVSRVEGKS
FT                 QRLQLTISGADKDQKHPLVVRTVNQLKLPSQTMDYEHMCQMHPYLKNLPLE
FT                 SYSNVIPRIIIGVDNVKLISVLKVREGGQGTLVAAKTRLGWSVYGKYSNME
FT                 AVEHVNFHQHQVKCTIDNDQLHDMMKHFFNIEESCIAIKPESEENQRAVQI
FT                 LERTSVRVPSGFQVGLLWKKDEFNLPDSYPLALRRLKCLEQRLLRKPELYA
FT                 KVNELIQNYINNGYAHVASDVELESADPRRTWYLPLGVVQNPRKPSKVRLI
FT                 WDAAASVKGLCFNDLVLKGPDLTTSLIAVLIRFRQRNIAIGGDLREMFHQI
FT                 AIRPEDRQFQRFCGEDIKMNRRKFWLWT"
FT   CDS           join(3323..4198,4202..6346)
FT                 /product="BEL-36_AA-I_1p"
FT                 /translation="MVLTSRGCTKSQETKQSSLDLGRGGIRERSVLQRSCT
FT                 QRTRPYDIIDSRADQISPKEYCHWWRSERDVSSDRHSTRGPTIPKILWRRH
FT                 QNESPQVLVMDVAIFGASCSPCIAQFIKNKNASEFLDEYPRAAQAIIDNHY
FT                 VDDYLDSVDTVGEAVELMEQVKYIHANGGFEIRQFVSNSTEVLRNLGVEES
FT                 MADKNLNLETESSRVLGMFWLPSRDVFTFTTPSNSEPLLLETHSSSPTKRQ
FT                 VLRVIMSVFDPLGLIAHFVIHGKILMQHIWRAGTNWDEEIPAHLRQSWTTW
FT                 NYLPNLKEIQIPRCLLGFLRSEKSITSELHVFVDASREAYACAIYLRTMGT
FT                 SGVECSLIVAKSKVAPLKPTSIPRLELQAALIGVRLMEHVQQSLTIRITRR
FT                 IFWSDSSTVLSWLQTDGFRYHQYVALRVGEILSSSKANEWRYVPSGLNVAD
FT                 DATKWKTGPDLSITSIWFNGPMFLRQSESSWPVQPRVQQTNEEQIQHVCLH
FT                 REKIGESIIDISRFSNWNRLHRAAAYVCRAVESFKGRRATSVCAMLTTSEL
FT                 AAAENLLWRQVQREVFQMEYHIFSSRNDESVEVVVDKSSTLYKLSPFMDKN
FT                 GVIRMGSRIGAASFAPYEAKYPLILPKQHHLTFLLVDSYHRRLLHANNETV
FT                 LNDMRQRFYVPALRRLVRRGAAECQQCKVRKASPQAPRMASLPRARVTPFV
FT                 KPFTYVGVDYFGPMMVKVGRSQVKRWVALFTCLSIRAVHMEVVHSLSTNSC
FT                 IMAFRRFVARRGAPLEVYSDNGTCFVGANRRLKKEIQEINEKCAATFTNAR
FT                 TSWIFNPPAAPHMGGLWERMVRSVKTAMHAIGDGLRHPNEETFETIVLEAE
FT                 AIVNSRPLTYIGLDSGDQEALTPSHFLLYGVQGVNQPAVQPIEYRATLRDS
FT                 WKLAQWMIDEFWRRWIREYLPVITRRSKWFEQVKPIQLGDVVLVIDDSMRN
FT                 SWIKGRIVEVYPGKDGQVRRAKVQTAKGIIIRPAVKLAVLDVLGSTRSHES
FT                 G"
XX
SQ   Sequence 6348 BP; 1827 A; 1442 C; 1539 G; 1540 T; 0 other;
     ttcttcaaag atttcatctg tttccaccgg attgaaggca gtagtttcat ccggagagaa        60
     tggatcagtc gaatccacac caaaatgaga ccgtgcggca ctgtaatttg tgtgacagac       120
     cggattccgc agataatctg gtccagtgtg atcgatgtga tcagtatgct catttctcgt       180
     gcgccggggt gaatgattcc atatctgatc cggaccgtag ttttgtgtgt cagagctgta       240
     cggcaaacga tgaccttgca tcagtacttt ccaagcgatc gagtaggagt tctcatagta       300
     gccgtagatc agcgcgactc gctttaaact tgcagctact ggaagaggaa aaccgaatcc       360
     gcatgaaaca attggaagaa gcggaaaagt ttcgccagtt gaagatcgag gcagagcaag       420
     agatgcttcg aaagaaattt gagctgctac agatggaatt ggaaagcgaa gacgacgacg       480
     gagcaagtag gaagagcaga atgagcaaac gaatagttca gaagaatact gagaagtggg       540
     tccagaaaga aggtcagaca gatggagcga acaaaacagc taccacgtcg tccaacagta       600
     actcacaaca gcgttctgtg agcgacaatg atcgtgcgca aaatgccgct gccgctcctg       660
     aacttgttag ccttgatcaa gttccgccta caacctcagc aagtagtact ccaaagagtg       720
     accttactac cggtgtacca tccggaagtc cagccggcgt cgcgatcgtt ccttcagaaa       780
     gaacaacagt gggcaatgtg agagtgatta atacgacgag tgctgctaca cgtaaggctc       840
     ctctttcgga agtcatcgtc agcccgcagt tgttctcgaa tacaacgatg atttcgaaag       900
     ctcccgtggt accaatatgt agtacgatga ttgaattacc accaacatca cttcagcatg       960
     gcatatatcc aaatacgacg ttaccacctc cttcgtcttt agtgtcgcct ccggatttcc      1020
     tttcgattgc aaaacatgct cccgcaccaa caacaagctt gctaccgccg ccagggtctg      1080
     atttaccagt catgcctagt ggccgggaca acatgatgtc aaataggatg atccagacac      1140
     gttatggaga accaatgaat tcgctgccaa catcagcccc tcacgggtcg gggcagaact      1200
     atagcggtgc ggtgtatacg actcaagtcc cccaacaatc gattccgtcg ctaagacaac      1260
     ctacgggctc agtatcgcac catcaagcag tcaccattag taatccgatt ccgaacaatg      1320
     caactgtgac ttccagcttg ccacaaccat cagtatccga tggattagcg ccgaattatc      1380
     cagtcgccac atttggaccg aattcgattc aacttgccgc tcggcaagtg attccaagag      1440
     agctaccagt attttctggt gatccgcaag actggcctct ctttttcagt gcctttcgga      1500
     attcaactgc agtctgcgga tacggcgatg ccgaaaattt agctcgttta caacgatgct      1560
     taagagggca cgcattagaa gctgtacgca gtaggttgct gattccagaa tccgtacccc      1620
     atgtgattgc caccttacaa cgtttatacg gtaggccaga agtaattatc aatgccttgc      1680
     tgaaaaatct tcggagcgtc ccttccccca gaacagatga tttgaaaaca ttgattaaat      1740
     ttgggatggc ggtgcaaaat cttgtcgagc atatgatcgt agctgagcaa cagcatcatc      1800
     tctccaaccc tatgttgcta ttcgaactgg tggagcgttt accctctcac ttcaagctgg      1860
     aatgggcaag ctataagtac ggattggtgg atgtgaatct agcaaccttc agtgaattta      1920
     tggctcgatt agtcacaatg gcgagtgatg ttacattgca tgtcgataca ggttattctc      1980
     ctaactcaaa gccggagaaa tacaaacgag aaaaaacttc agcggaaaaa ttattccttc      2040
     atcatgctga ggtgaactca aagcatgaga agaaacctca agtagagaga tcctcaccag      2100
     agtcgacaag tacgcctttg gtgaaaactt gctcgtattg tcatcgcact ggtcataaaa      2160
     ttgcagattg tgacgcgttc aaagctctag attgtgatgg tcgatggaag gccgttcgag      2220
     agaaaggatt atgccgaata tgtctagtgc ctcacaagtc ctggccctgt cgatccaaaa      2280
     gagattgcgg atatgaagat tgtcggttgc gtcacaacgt gctgttgcat tcgaaggcac      2340
     caaaaaataa cccggtcacc ggtatccaga acatcgcaag caccagcaac attgcgcacc      2400
     agaatcatca cttcctaaag tcaagtacac ttttacgtta cgtcccggtt acgctttacg      2460
     gaaatggaag aacggtaagc gtgttcgcct ttttagatga cggatcatct tcaaccatga      2520
     tggacgtaga gcttgcggaa gaccttggag tagaaggcat aagcgaaccg ttaacgctca      2580
     cctggacgag cgatgtatcg agggtcgaag gaaagtcaca acgcctacag ttgacgatct      2640
     ctggagctga taaagatcaa aaacatccat tggtagttcg aactgtgaat caacttaaac      2700
     ttccgagcca aacaatggac tacgaacata tgtgtcaaat gcacccgtat ctcaagaatt      2760
     taccgcttga aagttacagt aatgtaattc cacggatcat cataggagtg gataacgtta      2820
     agttgataag tgtactaaaa gtacgcgaag gaggccaagg gacacttgta gctgcaaaaa      2880
     ctagacttgg ctggagcgtg tatggaaaat acagtaatat ggaagccgtc gaacacgtta      2940
     atttccacca gcatcaagta aaatgcacca ttgataacga tcagctgcat gatatgatga      3000
     aacacttctt caacatagaa gagtcgtgca tcgccattaa gccggagtcc gaagagaatc      3060
     agcgagcagt tcaaattctt gaacgaactt cggttcgggt accttccggg ttccaagtgg      3120
     gcctcttgtg gaaaaaggac gaatttaacc ttcctgactc ctatccgttg gcactccgcc      3180
     gacttaaatg cctggaacag cgccttctgc ggaagcctga gttatatgca aaggtgaatg      3240
     agctcattca gaattacata aacaatggat acgctcacgt ggcatcagat gtggaactgg      3300
     aatcggcaga tccgagacgc acatggtact tacctctagg ggttgtacaa aatcccagga      3360
     aaccaagcaa agttcgcttg atctgggacg cggcggcatc cgtgaaaggt ctgtgcttca      3420
     acgatcttgt actcaaagga cccgacctta cgacatcatt gatagccgtg ctgatcagat      3480
     ttcgccaaag gaatattgcc attggtggag atctgagaga gatgtttcat cagatcgcca      3540
     ttcgacccga ggaccgacaa ttccaaagat tttgtggaga agacatcaaa atgaatcgcc      3600
     gcaagttttg gttatggacg tagccatttt tggtgcatct tgctccccat gcatagcaca      3660
     attcataaaa aataaaaatg cttctgagtt cttggatgaa tatccacgag cagcgcaggc      3720
     gatcatcgac aaccattatg tcgatgatta cctcgacagt gtggatactg ttggtgaggc      3780
     ggtcgaatta atggaacaag tgaagtacat ccacgccaac ggtgggtttg aaatcagaca      3840
     gttcgtatcg aattcaacgg aagttttacg gaacctggga gtcgaagaaa gtatggccga      3900
     taaaaacctg aacttggaaa cagaatcatc gcgtgtgctc ggaatgttct ggcttccatc      3960
     tcgagacgta ttcaccttca ccacaccttc aaactctgaa cctttgctgt tggaaacgca      4020
     ttcatcatcc ccaacaaaac gacaagtact ccgtgtcatt atgagcgtct ttgatccgct      4080
     tggactaata gcccattttg ttatccacgg aaaaatcctg atgcaacata tttggcgtgc      4140
     aggaacaaat tgggacgaag agataccagc gcatcttcgg caaagttgga caacttggta      4200
     gaattacttg ccaaatttga aggaaatcca gattccacga tgtctcttag gtttcttgcg      4260
     ttctgaaaaa tcgatcacat ccgagttgca cgttttcgtg gatgctagtc gagaagctta      4320
     tgcttgtgca atttatctgc gaacgatggg aacatctgga gttgagtgct ctcttattgt      4380
     agccaaaagt aaagttgcgc cgttgaaacc tacatcaata ccgagattag aactacaggc      4440
     agcattaata ggagtaagat tgatggaaca cgtacagcag agcctcacta ttcgaattac      4500
     cagaagaatt ttctggtcag actcatcaac cgttctgtcc tggcttcaaa cagatggatt      4560
     tcgatatcat caatacgtgg cattgcgggt aggagagatt ttgtcttcgt ccaaagcaaa      4620
     cgagtggaga tatgtgcctt cgggactaaa cgtggcggac gacgccacaa agtggaagac      4680
     cggaccagac ctcagtataa ccagtatctg gttcaacggc cccatgttcc ttcgtcaatc      4740
     ggagtcgtcc tggccagttc aacctcgagt tcaacaaact aacgaagaac agattcaaca      4800
     cgtgtgtcta catcgcgaaa aaattggtga atcaatcatt gacatcagcc gtttctccaa      4860
     ttggaatcga ctacatcgag cggcggcata cgtttgcaga gccgtagaat cattcaaagg      4920
     tagaagagcg acatcagttt gtgcgatgct gactactagt gaacttgcag cggcagagaa      4980
     cctgttgtgg cgccaggtac agagagaagt tttccagatg gagtatcata tttttagttc      5040
     tcgaaatgac gaaagtgtcg aagtggtggt ggacaaatct agtacgctgt ataaattgtc      5100
     cccatttatg gacaagaatg gagtcatacg tatgggcagt cgcattggag ccgcttcgtt      5160
     cgctccgtat gaagcaaagt accccctcat tttgcctaaa cagcatcatt tgacgttcct      5220
     tttggtcgat agctatcacc gtcgtctgtt acatgcaaac aatgaaaccg ttttgaacga      5280
     catgagacaa cggttctacg ttcccgcctt acgacgcctc gttaggaggg gggcagcaga      5340
     atgtcagcaa tgcaaagtcc gcaaagccag ccctcaggct cctcggatgg cttcactacc      5400
     cagggcaaga gtcacacctt tcgtaaaacc tttcacttat gtaggtgttg attattttgg      5460
     accgatgatg gtaaaagtgg gacgaagcca agttaagcga tgggtcgcat tatttacctg      5520
     tctttcgatc agggcggtgc atatggaggt tgtccacagt ctgtctacca attcttgcat      5580
     aatggccttc aggagattcg tcgcgcgacg tggggctcca ctggaagtat acagcgataa      5640
     tggaacttgt tttgttggag ccaaccgacg attgaagaag gagattcagg agataaatga      5700
     gaaatgtgca gcaacgttca ccaacgcaag aactagctgg atattcaacc ccccagccgc      5760
     acctcacatg ggcggactgt gggaacgaat ggtgcgttcc gtgaaaaccg ctatgcacgc      5820
     catcggcgat ggacttcggc accctaacga agagacgttc gaaaccattg tattggaagc      5880
     tgaagcgata gttaattcac gtccgctgac gtatattggc ttggactcag gagatcaaga      5940
     agcgttaact cctagccact ttcttctcta tggcgtacaa ggtgtgaatc agcccgcagt      6000
     ccaacctata gaatatcgag ccacattgcg agacagttgg aagttggcgc agtggatgat      6060
     cgacgaattt tggcggcgat ggatacggga atatctacca gtgataacga gacgatccaa      6120
     atggtttgaa caagttaagc caatacaatt gggagatgta gttctggtga tcgatgactc      6180
     catgaggaac agctggatta aaggaagaat tgtggaagtg tatccaggaa aagatggaca      6240
     ggttcgacga gcaaaggtgc aaacggcgaa gggtatcatt attcgtccag cagtgaagct      6300
     ggctgtcctg gatgtcctcg gaagtaccag gtcacacgag tcggggaa                   6348
//
ID   BEL-36_AA-LTR repbase;    DNA;    INV; 513 BP.
XX
AC   supercont1.382;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_AA_;
KW   BEL-36_AA-I; BEL-36_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-513
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.382; Positions  633318  632806.
XX
SQ   Sequence 513 BP; 173 A; 93 C; 91 G; 156 T; 0 other;
     tgttgccgcg ccgcttcaga atatagtgca accgggaact ccctcggtaa aacctactga        60
     tagacagaag aatatgtcaa tttctgacaa gggttcacga cgtcaaatga gttggcgaaa       120
     ttgaacaaca ttggttgaag caatttgata cgcaaaatta ttgaaagcat ttgtgaacag       180
     taaattatag tgaattcgaa actatattat cgtgttgagc ttaattgaac tcctctagtt       240
     cttcacctct taggtaatag tatgtgaatt atataataga actgatcata aacttaattg       300
     tatattataa cctaacagcc acccatatac gctctcattg agtgcacagc aaattgtacc       360
     tttagcatat ttcctattga ggcactgaaa tgtaagtcca actgaattgt catttaaata       420
     attgaactaa ttcaataaaa tttgcagctt tgaagctgta gaaagcagct atcaaaaatc       480
     ggtgtttata tgttgcccta gtcagccgca aca                                    513
//
ID   BEL-36_AnFu-I repbase;    DNA;    INV; 5522 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5522
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 685-685 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..5496
FT                 /product="BEL-36_AnFu-I_1p"
FT                 /note="PHD-finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H, and DUF5641."
FT                 /translation="MEGKVCAVCNGANTDNAVECDRCERMFHLDCVNEDET
FT                 VYSRDWTCLLCAPGTPPPASSTLHRATPIVASPGAREMAGSNMVNQEPFTR
FT                 ARSTEVISSLPNPPFDSSTASPVRNANVVWDEISRSFHRMMEELNAAREPR
FT                 RPESDVVQRLESVLETFVQRMNRDDNPQGARRENGTTSSSIAVQDGTLNVS
FT                 QSQVLARRSVSSKLPTFTGKPEEWSVFESSFYETTELCGFSDGENIVRLQQ
FT                 ALKGEALKAVQGRLRNAANLKEVMEELKTSFGRPEIIVQTLLSQIRRQVPP
FT                 KTEKLESLIQFAISVDEMCATVRTNGVEDRYDGPLLDELVGCLPPMVKLMW
FT                 GLHRITLSKVNLAAFGKWMQTIKQAAQSVTNPAAHSDRNSKYVHTHVTNSP
FT                 SQNTTEAKCACENGCAQLYECDSYWQKSIADRWDIVKKNYLCKRCLRKHRA
FT                 PCKETSACGKEGCTAKHHPSLHNKAGKGKQEANFSHSTVTDDNIVLRYIPV
FT                 ELRAGTKTVKTIAFLDEGASVSLVEQSLVDELGLDGPNRPLCLKWTGGQHR
FT                 TERDSKQVSVDIIGTSAGAQVFEASNVRTVGRLGLPAQLVNMDRLRTKHRH
FT                 LASIPLAQYAATPPRILIGMNNYHLTVPLKTIEGRVNEPVATKTRLGWVLS
FT                 GCDSSSMSNTSSILACHRAHVCDCQDIDARIDLALKGSFALEEPRCKGKIK
FT                 SLSNDDERASIMLSENTKLRGERYATGLLWRYDDVKLPNNRSMAVRRLACL
FT                 ERRMAKDEKLRMMMQQVLKEHIEKGYVRKLSEEERNIKHPRKWYLPIFPVF
FT                 NPKKPNKVRVVWDAAAAVNGISLNSMLLTGPDLLSPLPTVLSRFREFRVAI
FT                 TADIQEMYHQVIINEKDQISQRFLWRTDRLQEDPDEYVMVRMTFGSACSPS
FT                 CAQFVKNMNADRFADRFPSAVECIKVHHYVDDMLTSVESVPEAVKLATDVK
FT                 YIHSQGGFKLHHWMATHTEVLRAVGGSNSQEKDMNIDPAASTQKVLGMWWN
FT                 SIEDTFQFKVPELPILQGKVKPTKRQLLSMLMSIYDPLGLIAGFLFFLKVL
FT                 LQEIWRSGVGWDDEISSELQEKWQDWLACIPHLQSVRIPRCYRKSVDIDKC
FT                 KIQLHIFVDAGKDGFAAVGYFRFESEDHREVVLIGAKTRVAPLKYTSIPRL
FT                 ELQAAILGVRLMKAIETAHRIKIDRRYLWTDSKDVLCWLNADHRKYSIYVA
FT                 HRVSEILENSTVNEWHWVSTKRNVADEGTKWSNLNRHFTSGSWFQGPEFLQ
FT                 QPENAWQLDSFQPRMTEEEIKSTLSFHRVSTPVINFERFSNWRRLHRAIAY
FT                 LWRFINNARSPMAARQCGHLTTDELRQAERSIFIEVQKTEFPEDYHLLKEN
FT                 KSGTKNNSNKNGPLFRRSAYIDDNDVLRVRGRIDACRYVGDNTKRPIILPK
FT                 RSWVTDLVVAEYHWKYKHQNHQTVMNEVRQRFDIPALRSACHRVRSNCFIC
FT                 RIRQAYPRPPVMSELPLARLSPFIRPFSYTGIDYFGPFLVANGRRQEKRWG
FT                 VLFTCLTVRAIHIEVAHSLNTSACIIALRNFIARRGTPIEIVTDRGTNFVG
FT                 ADRELKDAAKQIDLDELIDAVYLPDTKWRFNPPGAPHFGGAWERLVQSIKR
FT                 TLSSIQFTKTPTDAVFANWLIEVEQIINTRPLTHVSVDSEEEAPLTPNHFL
FT                 LGSSSGAKTITKFDDSSAALRNSWKTSQLYADHFWKKWVASYLPTLTRRSK
FT                 WFQPQPPLREGDLVLVVDDALPRGCWPKGRIVKLLPSKDGVVRRVHVQLGT
FT                 RKILERPAVKIACINVEPHGGV"
XX
SQ   Sequence 5522 BP; 1627 A; 1249 C; 1388 G; 1258 T; 0 other;
     gtttaaaaaa tcatttgctt agtttcacaa acccggtacg aaagcgaaac cgcaacgttt        60
     taagcgaaac cgcagcgtca gtgttaagtg aaacaagaag gcccttgcaa ttggacaatg       120
     gaaggcaaag tgtgtgctgt gtgcaacggt gcaaataccg ataatgcagt ggaatgcgat       180
     cgatgcgaac ggatgtttca tctggattgt gtgaatgaag atgaaactgt gtatagtagg       240
     gattggacat gcctcctgtg cgcgcccgga acgccgcccc ccgcatcatc gactctgcat       300
     cgtgcgacgc ccatcgtagc cagtccaggc gccagggaaa tggcgggatc gaacatggtg       360
     aatcaggagc cattcacaag agccagatcg acagaagtga tctcctctct accgaatcct       420
     ccctttgatt catcaactgc atcgcccgtt cgaaatgcta acgtcgtttg ggacgaaatt       480
     agcagaagct tccatcgcat gatggaagaa ttaaacgcgg ctcgtgaacc gcgcagaccg       540
     gagtctgatg tggtacaacg gctcgagtca gtgttagaga cgtttgttca acgaatgaac       600
     agagatgata atccgcaagg agccaggcgg gaaaatggaa ccacctcgtc gtccatcgcg       660
     gtacaagacg gtactcttaa cgttagtcag agtcaggtgc tagcgagacg ttccgtcagt       720
     tccaaattac ctacgtttac cggcaaaccc gaggagtggt ccgtgttcga atcatcgttc       780
     tacgaaacga cggaactgtg tggattctcc gatggagaaa atatagtgag gctgcaacaa       840
     gcattaaagg gagaagctct taaagcggta caaggacgac ttagaaatgc agcaaatctg       900
     aaggaagtaa tggaagagct gaaaacatcg tttggtcgtc cggaaataat cgtgcaaacc       960
     ctgctaagcc aaattcgtcg tcaagtgcca ccgaaaactg aaaaattgga atcgctcatc      1020
     cagttcgcca tatccgtcga cgaaatgtgt gctacagtga gaaccaatgg cgtcgaagat      1080
     cgatatgacg gtcccctgtt ggatgagctc gttggatgtc ttccccccat ggtcaagctg      1140
     atgtggggtc tacaccgtat tacgctatct aaggtcaacc tggcggcctt tggaaagtgg      1200
     atgcaaacca tcaaacaagc agcgcaatcg gtgactaatc ctgcagcgca ttccgacagg      1260
     aatagtaagt acgttcacac ccacgtaact aactctccct cacagaacac cacggaagca      1320
     aagtgtgcat gtgaaaatgg atgtgctcaa ctgtacgagt gcgattcata ttggcagaag      1380
     agcatcgccg atcgatggga catcgtgaag aaaaactacc tatgcaaacg ctgcttaagg      1440
     aaacatcgag cgccctgcaa agaaacaagc gcctgtggca aagaaggttg tacggcaaag      1500
     catcaccctt cgcttcacaa taaggcaggt aagggaaagc aggaggcaaa tttttctcac      1560
     tctacagtca ccgacgacaa catcgtgctg cgatacattc cggtcgagct tcgcgccgga      1620
     acgaagacgg taaaaactat tgcctttctg gacgagggag catcggtttc gttggttgag      1680
     caatcactgg ttgatgagtt gggactggac ggaccaaacc ggccattgtg cctaaaatgg      1740
     accggaggac agcatcgaac ggaacgagac tcgaaacagg tgagcgttga tataataggg      1800
     acatccgccg gggctcaggt tttcgaagca tcgaatgtgc gaacggttgg acgccttggc      1860
     ttacccgccc aacttgtaaa tatggatcgc cttagaacaa aacatcgcca cctagcttcc      1920
     atcccactag cgcagtatgc tgctactcct ccgcgcattc taattgggat gaacaattat      1980
     cacctcactg tgccgctgaa aacgatagag ggtcgagtaa atgaaccggt tgccaccaaa      2040
     acgcgtttag gatgggtact ttcgggttgc gattcatctt caatgagcaa taccagcagc      2100
     attttggcgt gtcatagggc tcatgtttgc gattgtcagg acattgatgc aagaatagat      2160
     ctggcgctaa aaggtagttt cgcattggaa gaaccacgat gtaaaggaaa gatcaagtcg      2220
     ctctcgaacg atgatgaacg ggcaagcatc atgcttagtg aaaacaccaa attacgagga      2280
     gagcgatacg ccactggatt gctgtggcgt tatgatgatg tgaaacttcc taataaccga      2340
     tctatggctg ttaggcgttt ggcatgctta gagcgtcgga tggcgaagga tgagaagctt      2400
     cggatgatga tgcaacaagt gctaaaagaa cacatagaaa agggatacgt tagaaaactg      2460
     tctgaggaag aacgtaacat aaaacatcct agaaaatggt atttaccgat ctttcctgta      2520
     ttcaacccaa agaagccaaa caaagtgcga gtggtgtggg atgcagcagc agcagtaaac      2580
     gggatatctc ttaattccat gctactaacg ggacctgatc ttctctctcc tctaccgacg      2640
     gtgcttagca gatttcgaga atttcgcgta gcgataacag cggacatcca agaaatgtat      2700
     catcaggtca ttatcaacga gaaggatcaa atcagtcaaa gatttttatg gaggactgat      2760
     cgcctacaag aagacccgga tgaatacgtg atggtaagaa tgaccttcgg ttcagcttgc      2820
     tctccaagct gtgcgcaatt cgtcaagaat atgaacgctg atcgtttcgc tgatcgtttt      2880
     ccctcggccg tcgaatgcat aaaagttcat cattatgtcg atgatatgct cactagcgta      2940
     gaaagtgttc cagaagcggt taagcttgcc acagacgtga aatatatcca ctcacaagga      3000
     ggattcaagt tgcatcactg gatggcaaca cataccgaag tactacgggc agtgggaggt      3060
     agcaacagtc aggaaaagga catgaatatc gatcctgctg cgagtacaca aaaggttctg      3120
     gggatgtggt ggaactcgat agaagatacg ttccagttta aagtaccaga actacccatc      3180
     cttcagggga aagtaaagcc gaccaaacga caactcctaa gtatgctcat gtccatctac      3240
     gacccgttgg gattaatcgc aggtttctta ttctttttga aagtgttgct gcaggaaatt      3300
     tggcgatccg gggttggatg ggacgatgaa atatccagcg agctacaaga gaaatggcaa      3360
     gattggttag catgcatacc tcacctgcaa tcggttagaa tcccgcgctg ctaccgtaaa      3420
     tcagttgaca tcgacaagtg caagattcaa ctacacattt tcgtagatgc cggaaaagat      3480
     ggatttgcag ctgtgggata ttttcggttt gaatccgaag atcatcgcga agtagtgttg      3540
     attggtgcta aaaccagggt agccccgtta aaatatacat cgatccctcg gcttgaatta      3600
     caggcagcca tactgggggt caggctgatg aaggctatcg aaacagcgca tcgaataaaa      3660
     atcgatcgtc gatacttgtg gacggactcc aaagatgtgt tatgctggct aaatgctgat      3720
     catcgaaaat acagcattta cgtggcacat cgcgtaagtg aaatcttgga gaactcgaca      3780
     gttaacgaat ggcactgggt atcgacgaaa cgcaacgtag ccgatgaagg aacaaaatgg      3840
     tccaacctga acagacactt cacaagtgga agctggtttc aagggcccga atttctgcaa      3900
     caaccagaga acgcgtggca actggatagt ttccagccta ggatgaccga agaggagata      3960
     aaatcaacgt tatcattcca tcgggtatca acaccagtta ttaacttcga gagattctct      4020
     aactggagac gtctgcatcg cgccatcgct tatttgtggc gatttatcaa caatgctcga      4080
     tcacccatgg cagctcggca atgtggacat cttacaacgg atgaattacg acaagcagag      4140
     cggtccatat tcatcgaagt gcagaagaca gagttccccg aagactacca tctgctaaaa      4200
     gaaaataaat caggtacgaa gaataacagt aacaaaaacg gtcctctttt tagacgcagt      4260
     gcctacatcg atgataacga cgttttacgg gtacgtggaa gaatcgacgc atgtcgttat      4320
     gtaggtgata atactaagag gccgataatc ctccctaaaa gatcctgggt gacggatctg      4380
     gtggtagcag aatatcactg gaagtacaaa caccaaaatc accaaactgt tatgaacgaa      4440
     gtgcgccaac gttttgacat acctgcttta agaagcgcgt gtcacagagt aaggagcaat      4500
     tgttttatat gccggattcg acaagcgtac ccgcgaccgc ctgtgatgag tgaactacca      4560
     ctagcccgac tgtcaccgtt catcagaccg ttctcctaca caggaattga ttattttgga      4620
     ccctttctgg ttgccaacgg ccggaggcag gagaaacggt ggggtgtgct gttcacgtgt      4680
     ctaacagttc gggcgattca tatagaggtt gctcatagtc tgaacacaag cgcctgcata      4740
     atcgcgcttc gcaattttat tgcacgtaga ggcactccta ttgaaatcgt gaccgatcga      4800
     ggaacaaatt tcgtcggcgc tgatcgtgag ttgaaggatg cagctaagca gattgatctc      4860
     gatgagctga ttgatgcagt ataccttcca gacacaaagt ggagatttaa cccccctggg      4920
     gctccacatt tcggcggtgc atgggagagg ttggtacaat cgataaagcg aacactctcc      4980
     agcatacagt ttacaaaaac accgacagac gctgtatttg ctaactggtt aatcgaagtg      5040
     gagcaaatta tcaacacgcg tccactaaca cacgtatcgg ttgacagcga agaagaggcg      5100
     ccactaacac caaaccactt cctactgggt tcatcttccg gggcaaaaac aataactaaa      5160
     tttgatgact cttccgcagc acttaggaac agttggaaga catcacaatt gtacgcagat      5220
     catttttgga aaaagtgggt agcttcttac ttgcctaccc ttacgcgtcg cagcaaatgg      5280
     tttcagccac aaccgcctct aagagaagga gacctcgtgc tagtggtgga tgacgcctta      5340
     ccgagaggat gctggcctaa aggaagaatc gtcaaactct taccatcgaa agacggcgtg      5400
     gttcgccgag ttcacgtgca actaggaacc cgaaagatac tggaacgacc ggccgtaaaa      5460
     atcgcctgta ttaacgttga accgcatgga ggtgtttaac gtggtcaaac accgggggtc      5520
     ag                                                                     5522
//
ID   BEL-36_AnFu-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-349
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 739-739 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 349 BP; 109 A; 63 C; 95 G; 82 T; 0 other;
     tgttgtttac aacaacggcc caacgtttga cagcgccaga tgagcgagcg aaatgaggag        60
     cgaaacgacc gagcgagacg gttgcggaca agtttaggga tattcatccg atccgaagga       120
     tcgcgggcgg ctcggatgaa cttcggaaag gagtaacgac cgcgatcggt tgtaaaaaaa       180
     gagcataaaa gtgcgtaaga agggacgcta gttctctttt tttcgataga aacagcctga       240
     gaagcaacag tgatttttta attaaagatt gtactttatc attagaaaaa ctgtttcttg       300
     atacttttgg caacggttag aaagaaaggg ctcgttgctg gacgcaaca                   349
//
ID   BEL-36_CQ-I repbase;    DNA;    INV; 3198 BP.
XX
AC   AAWU01012157;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_CQ_;
KW   BEL-36_CQ-LTR; BEL-36_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3198
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 225-225 (2011).
XX
DR   GenBank; AAWU01012157; Positions    5289    8486.
XX
CC   'GGGGG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1171..2121,2125..3198)
FT                 /product="BEL-36_CQ-I_1p"
FT                 /translation="MASAETPQPLEYWIADLLTTQLRLVELWQCVKDGNTT
FT                 TSHLAVSYKEVDELWRHFFDASVEYQSHDDFVEEEQLTFDRVRQDFSELYF
FT                 GVKAFILDSMNHAGDRNKQALDQFASRVHTQAVDRVTSIGSGGSKLCLQNR
FT                 DEKQHTHTCKGVQKVQGSICRSHQLSQTQTNGGSGSTYTQEVQGSFTHTQM
FT                 VTQNASSIVLTIPPTLRHRSENAQSIGDSLRTPTHIDLPERSIHAGEESHS
FT                 ATRQGSFAEIFSIGRKQVGAPLRTDFLLASLKGGNIVQGTKGFPQSALVQD
FT                 QTDSPSNIFKLTGFIMVLKTLIRPKAFMAYLKPKMLLGRATHSTPTKNSAV
FT                 KNTTPRRNSCNGQLGYPNPRRGYKVNNYSRRNANCTGQFVFAHTTSRESRC
FT                 IGQLLTEGSDKTITTTHTKAHMSQQVANHLEEWYSSVRFTGYFGLQLPGRL
FT                 SDINTTTSCTQGCTGQQAVSITAGSCDTGRSTLVPSRLGCKTNTSAGPING
FT                 AGQQFTNTTSKTRSAGQFEWYVSRDNSRFLFHLADYKRNLFLGRELPGREQ
FT                 ICATIMWILLKQMPSPRTGRGGRPATGSTPRNTTNDHRQQLGTVTRKKRSR
FT                 SPKLVWVCKQKVFDPRMYVLCEVDSKVELCCDVNINLNLIFEDTNTSTVGL
FT                 KIKTIHRTLILGLVFIQKWVISAGAE"
XX
SQ   Sequence 3198 BP; 903 A; 785 C; 776 G; 734 T; 0 other;
     taatggtcct tcgaaccgga tgaagtcacc ttcatccggc cgaagtgagg agaaccagtg        60
     caacaacagc cacggacaac caggagaact aggacggttc taggaaggcg cgcttttacg       120
     cttggatcgc cgccatcgcg atttaccatc atctgctgag aggagaagta ctgctacctg       180
     gaagctggac aagcatatgg aaattcacca ttacggcgag gaaaccgcca tcgctgcaac       240
     tacttctttt tactgaatcg gaaattcagc ctggacgatc atcacttcgc acatctaccg       300
     gacaaaccac agcgaaccac ggctgcactg atccagcgcg gaattccttt tcataggtaa       360
     atattactga tcagtgtatg tctggccgaa gccaagcagt aacctcttct aacaccaaca       420
     tccgcaattt gtctttctac cctactacgg agcaaaacaa ctcgttggca gagttgcaag       480
     gatcaacttg gatcggtttc acggtttggt gtcgtgtggt attgtaccat acggcaagga       540
     gatcgaatgt tcgtcgaaca cgtcgctggt gttatcattt ggaccaactg gtacaccagc       600
     tggaaatcta tcccgtttgg ccgcaacaac acttcgagag ttctcgcacg ctggcacgat       660
     caagcacgtg gtgccggtgt aaacaaacca tcggcaagct cacgatcggc tttggaaatt       720
     ctattcgtgc ggtaccggcg gtacccactc gaggagacga actactaatc ccttggatgt       780
     acggaagagg cggcaaagca aactgttatc ccaggtaaat aacaaattgg gtggtatatg       840
     tccgccgaag cttactcgga aatacgcaca ccaataattt tcaatcctct tcggcgtact       900
     actactattc tggaatcacc ctgctcggcc gagataccca ctcggcaaat cgaaacaaca       960
     gcaacgcaac ctgctacaac ccagagaacg tgtatacaac cgtgtgtggc tcgctattca      1020
     gacgactgcg acgtatgctt tggatgcggt acgacaattt gtttgtcaag gtaaacacaa      1080
     gtatatgtct aatgaagcaa agaccccgac agaagatcta acacacacct ttcttggttt      1140
     tgtctggtca actacacact actcaacatc atggcgagtg ctgaaactcc tcaaccgctg      1200
     gagtactgga tcgctgattt gttgaccaca cagctgaggc tcgtcgaact ttggcagtgt      1260
     gttaaggatg gcaacactac gacttcccat ttagccgtgt cgtacaaaga agttgatgag      1320
     ctgtggagac acttctttga tgcttcggta gaatatcaat ctcacgacga ctttgtggaa      1380
     gaagaacaac tcacttttga ccgggttagg caagacttca gcgagctcta ttttggtgta      1440
     aaagctttca tattagacag catgaatcat gcaggtgatc gtaacaagca ggcactagat      1500
     cagttcgcat caagggtgca cactcaggct gtggacaggg tgactagtat tggttctggt      1560
     ggatcaaaac tttgtttaca aaaccgggat gaaaagcaac acactcacac ttgcaaaggg      1620
     gttcagaagg tccaagggag tatttgtcga tcgcatcagt taagtcaaac ccaaacaaac      1680
     ggcggatcgg gtagcactta cactcaggag gtccaagggt catttacaca cactcaaatg      1740
     gttacacaaa atgccagctc gatcgttttg accataccac caacactgcg gcacaggtcg      1800
     gaaaatgctc aatccattgg ggattcgctg cgtacaccta cacacatcga tctaccggaa      1860
     cgatcgattc atgcggggga ggaatctcat tcagctacac ggcaagggtc gttcgcagag      1920
     attttctcaa tcggccgtaa acaggtagga gcaccactga ggacggattt tctattggca      1980
     tcactcaagg gagggaacat cgtgcagggt acgaagggtt tcccacaatc ggctcttgtt      2040
     caggaccaaa cggacagccc tagtaacatt tttaaactta caggttttat catggttctg      2100
     aaaaccctca tacggcctaa ataggctttt atggcctact taaaacctaa aatgttacta      2160
     gggagagcaa ctcattccac tccaacgaaa aactcagcgg tcaagaacac gactccacgg      2220
     cgaaacagct gcaacgggca gcttggttat ccgaatccac gcagaggcta caaggtcaac      2280
     aactattctc ggaggaatgc aaattgcaca gggcagtttg tgttcgcgca caccacctca      2340
     agggagagtc gctgtattgg acagctgctc acggaaggtt cggacaaaac aatcactact      2400
     actcatacca aggctcacat gtcccagcaa gtagcaaatc atctcgaaga gtggtattct      2460
     tcagtacggt tcacgggcta ctttggacta caactaccag ggcgactgtc ggatatcaac      2520
     accaccacat cgtgcacaca gggctgcaca ggtcagcaag ctgtatcgat cacagcgggt      2580
     agctgtgata caggaaggtc cacacttgta ccctcaaggc taggctgcaa aaccaacact      2640
     tctgcaggac cgatcaacgg cgctggacag cagtttacta acaccacatc caagacaaga      2700
     tctgctgggc agttcgagtg gtacgtttcg agggacaaca gtcggttttt gtttcacctc      2760
     gcagactaca aacggaactt gtttttggga cgggagctcc caggacgtga acagatctgc      2820
     gcgacgatca tgtggatttt gctgaagcaa atgccatctc caaggactgg acggggcgga      2880
     cggccggcaa caggatctac gccaaggaat acaaccaacg atcatcgaca gcagctgggc      2940
     acggttaccc gcaagaagcg gtcgagatcg ccgaaacttg tgtgggtatg taagcagaag      3000
     gtgtttgacc cgaggatgta tgtgttgtgt gaagtggaca gcaaggtcga gctgtgctgt      3060
     gatgtgaata tcaacttaaa tcttattttt gaagacacca acacatctac agtaggtttg      3120
     aaaatcaaga ccattcatag aaccttgatt ttggggctag ttttcattca gaaatgggtt      3180
     atttcagcgg gggcagaa                                                    3198
//
ID   BEL-36_CQ-LTR repbase;    DNA;    INV; 564 BP.
XX
AC   AAWU01012157;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_CQ_;
KW   BEL-36_CQ-I; BEL-36_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-564
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 226-226 (2011).
XX
DR   GenBank; AAWU01012157; Positions    4725    5288.
XX
SQ   Sequence 564 BP; 145 A; 122 C; 146 G; 151 T; 0 other;
     tgtttgatag taagctaatc atatttgggg cttcaaccct gcatattgta tcggtgggat        60
     tttggtaatc gatttttgtg agatattgat ttacgcggga aaatgggctt gaaccgagag       120
     ttgtactctc ttctcatgag catcagaacc cgaactataa aacatcgcaa gggcccaaag       180
     ggcaacttta gggcttgtgg tctcagatcg cagctaggac aagttagtca gaaaaggtct       240
     gctcaggaca acgggaaccg ggtcgccggg actccggcac gccggacact ttaactattg       300
     taaccaacga taattgtatt ttaatataat gtgctaagtg taataaacgt tagttttcgt       360
     atgtgcgaat gtttctaagt ggtgcgtttt attggacatt ggcggtggca aactagaagc       420
     gttcctgtag cagttgaacg ctacgacccc cccccccccc cccacaacac tttgttacgg       480
     ggcagcacaa gtccgtcggc caggaatttg gctgtgttga ggttacggag gaactggtct       540
     gaatcgaagg tccgtagccc aaca                                              564
//
ID   BEL-36_DTa-I repbase;    DNA;    INV; 5018 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5018
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5647-5647 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
SQ   Sequence 5018 BP; 1421 A; 1408 C; 1159 G; 987 T; 43 other;
     acattcttta aaacgtctca amtagccaag gaacacttat acgtgaaaaa tctctggcga        60
     cataatgcat acatccaagt gagataacca ccacgtaaaa atgccagata tcgaaacgcc       120
     gagcggawcg tttcactgca gaaaatgtaa actggaggat gakgaccgaa tgktacgatg       180
     ctgccgctgc wgctcatggt atcatttcgc gtgcgtcggc gccaacgacg ctggcaccgg       240
     cgtkagctgg agctgcgagt gcagtaacaa gctgcawgat acaasagctg ccagagctac       300
     agcagacctc ctcctcgatc atgagaaccc actgcaagmg ggtaaacccc aagcktcctc       360
     gtcaccggcg gcagaaaact cactcgttgg cctgggttac ataacctcaa cagtgagcac       420
     agcccaggga atggttccca ccctggcaag tggactccca cgacatgtam gaaatggcct       480
     acaaktaacg acacggcttt aacaccacac agcggcccca cacactactt gcaccacgcg       540
     gggccgccac cacatatgtg tataacctca acatgtgtag tgagtgcgaa tcgagaaccg       600
     tctgcaaacc taacctcaat cgcgcggamg cacgaggcga caaacacacc gaccatgtgg       660
     gackggcagg gcgcaggcaa gtgtgccaca ctccctgaag cttakawaam cccgcccgcg       720
     cagaacgcac caagcgcmgc acaaatcgcc gcccgccaag ckatccctag asagttgccc       780
     accctcgacg gcaaccccga aagctggcca ctgttcttca gtagctacca aaccagtacc       840
     gagatcgcag gctacactca agcggaaaat cttatgcgcc tacaagcaag cctcaagggc       900
     caagccagaa atgtagtcca gagcaagtta atgctaccgg caatggtgcc agaaatcata       960
     aaaactckgc aaatgtgctt tgggcgaccc gaacttattc tccgctcggt gctcaacaag      1020
     gtcaaacaac tcccgcctcs cagggacaag ctagagccsc tcattgaata cgctctaggc      1080
     gtacgtaacg cttactcaac gatggaagcg tgcgaactta aggaccacgt gagcaacccg      1140
     atgctcgtgc aagagctcgt ggacaagcta ccctcccaac tcaagctgca gtgggcaatg      1200
     aatgccagga acggagactc atcatcagta cggatcttta gtgaatggct atacgaaatt      1260
     gccgaggcag ccagcaaggt tacgacgccg ttctacaaca cgaggaacgc cmctcwgcac      1320
     taccatacgg aggaaacgga tcacgaagat agcagagcca agtgcatagc ttgccaaagc      1380
     gcggaccaca aacttcataa ctgcccggag ttcgagtcta tggccctgga ggaaaggcta      1440
     cgcgtcgtac gcgtcaataa actatgccat aattgcctaa accggcatcg tcgacagtgc      1500
     ttcctgagaa aagtgtgcgg catcaacggc tgcagtcaaa gccaccatcc kttgattcat      1560
     agagggctac aaccagacgc gttgcggsca gctgtaacgt ccgamatmag cgacgaagtc      1620
     cctcaccacc ataacggact gctccacact catcggcgca tggaaaamac aaatttccgc      1680
     actgttccaa ttaatattca ttacaatcaa caatcactac atacctttgc atttctagat      1740
     gagggctmct ccgtcacmct tatcgacaga aaggtcttcg agcaactgaa cgtgaggggc      1800
     gtcaggcaat ccctttgcct agggtggacg aacaatacta cgcacaccga ccacgcatcc      1860
     gaacgagcct cactcaacat gtccaacgct cgcaccggat ctaagttcaa gctgagggat      1920
     gtacacagcg tagascgagc tcgcccaaag gttccgwtat ctaagaggac tcccaatcga      1980
     atcatatcaa aatgctcgcc ccaccgttct catcggkgcc aacaactggc atctggctkk      2040
     gcccctcaag atacgggaag gagcatggaa tcagcccata gcgtcgaaaa caaggctagg      2100
     atggacacta cgaagctgca acacaagcag accagcaaca gagcgggtca atgtgcacgt      2160
     ttgtagctgc agccgactwg acgctgattt acacgaagcc ataaagcaaa catttggcat      2220
     ggaaacagca acgcaacaca aactgctgtc agcakaggat agwcaagcct tgagccacct      2280
     acaatcaact gccgttttca acgatggamg atatgaagtc ggtctgccct ggaaggatgc      2340
     cgacacacca ctacccgaga gttacccgaa cgcactcaac aggcttaagt gcctgcagcg      2400
     caagttcctc aagcaaagcg agctgagaga gcaaactcaa awagaaktgg acaatcttat      2460
     caataagggt tacgcgcgca agttaacttc caaagagatc gccgatcaaa acgagcgggc      2520
     gtggtatctg cccaccttca taactatcaa ccctaacaag ccgggaagag ttcgcctagt      2580
     ttgggatgcc gccgcccaat ccaacggaaa atgccttaac gactatctgc tccgaggacc      2640
     tgacctgctg caaccacttt tcgacctact agtttcgttc agggtcggcc aggtcgcaat      2700
     ctgcggcgat atagcagaga tgttccatca gataagagtc cgacccacgg atgcacacgc      2760
     acaaaggttc ctgtggtgag acaacggcga gaaagctgga caaccctcag tatactctat      2820
     gagcgccctt acattcggaa ttaattgcgc cccatttata gcgcactatg tccgcgacgc      2880
     caatgcagag cgcttccaga acatctaccc aacggccgcg aatgccatta agaattatca      2940
     ctacgtggac gatttcctat acagcgacgt cagcgttgaa gccgtcacca caatctccac      3000
     ccaagtgaaa caaatccact cggcgggcgg ctttaacatt cgcaactggt catcaaactc      3060
     ggaagaagtt ctccgcaagc tggacgccac tacaaactct ccgctgcagg tggaaattgc      3120
     agccacagaa aaggtgctcg gtctatactg gatgcccaag cctgacaagt tcgttttcaa      3180
     cttgaaattt gctaggctga aactcaatgt actgggagaa gacgtgccac caaccaagcg      3240
     cgagttacta caggtactaa tgtcaatcta cgacccattg ggatttattt cgtgctacac      3300
     aatcgcgcta aaaatcttgc ttcaagaagt atggcgaagc tcgatcaact gggatgaacg      3360
     cctaccattc gagctagtac ccaaatgggc acaatggaaa cgctcgttgc cgattattgc      3420
     agcgatacaa atttcaagat gctacttcca ttcagatgac cacgtgagcg atgtgcagct      3480
     gcatacattt gtcgacgcca gcaaaatggc ttacgcagcg gtctgctatc tacgcatatg      3540
     ccacggcgag tcaacttacc taagttttgc ggcatcgaag gcaaaagtag cccctcttag      3600
     cccagtatcg attcccagga tggagcttca agccgcggtt atcggagcaa gactcagcaa      3660
     gcagatcctc agcaactcac gacttcaaat aaaatcttgc tggtactggt ccgactccaa      3720
     aaccgtccta agctggctgc gtatggaccc acggaaattt cagcagtatg ttatgcatag      3780
     agttggtgaa gttttggaac ataccaacgt gaaccaatgg cggtgggtac ctacccacgt      3840
     taaccccgcg gatctcgcaa cgaaaaccac cagtgcttca gccatctcag tggccaagcc      3900
     cctgccaact cggcacaacg cgagaggaaa tacgctaagg actgctcgcc attcacactg      3960
     aaacgcatcg acccctcttc ttactttaca tggagcgact acgagcaaag gttcgcaagg      4020
     aaccactgcc gagaagcgta tcttgccagt tagtgcaaca ggcacaaatc atcctatggc      4080
     ggtacgcaca ggcttccgag tttgcgccag agatccaatg cttggatcga ggtaaatgta      4140
     ttcaccgcaa atccaaacta ataagtttga acatttttct agatcaccac aagcttcttc      4200
     ggatttgcgg tcgagcggaa aacttaaaca gccaacaaca aatcgtactg ccctacgcgc      4260
     accctataac acgccttata gtggtttggc atcacaatga aatgcaccac acatcccaag      4320
     acgcgtgtat aaaccgaatc cgaggcacct tctatattcc acgattgcga gtcctataca      4380
     agaacgtgcg caaatcctgt caacggtgca ggttagagac cgccagacca gatgttccac      4440
     aaatggctgc cttgccagcc gctcgactgg catcattcca acgcccgttc acatacgtgg      4500
     gtattgacta tttcggtccg atgttggtca gtgtcggacg ccgcagggag aagcgttggg      4560
     gagtcatttt cacctgcctt accattcggg cagtccattt ggagctggcg aattcccttg      4620
     atacggcctc gtgtgttatg gttattcgca actttattaa ccgaagagga tcaccctggg      4680
     aaatctactc ggacaacggg actaacttca aggccgccga aaaaatcatc tgcgaagaaa      4740
     gcctgagaat cgactacgaa gaagtgggag tagcgtttga tcaaatccaa tggaaattca      4800
     acccaccagc ggcccctcat atggggggag cttgggagcg gctcgtccgc tcaattaaaa      4860
     aggtgctgca cgctatctgc cccacgatga aattcacgga tgaaggactt cgaagcgccc      4920
     tgcgcgaagt ggaattcatc atcaacgccc gtccacttac gttcgtgtca ctcgattcaa      4980
     aggacgacga tgcattaacg ccgaatcacc tcctagaa                              5018
//
ID   BEL-36_DTa-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-276
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5661-5661 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
SQ   Sequence 276 BP; 81 A; 65 C; 61 G; 67 T; 2 other;
     tgttgccgcc gaaatcttgc ctaaaaccaa taagcccgat taaagggtat tccatctcca        60
     aatcagctgc gtaacagaac cgttacttgc ggagctttkg tgtatgcgag gccgcgacgt       120
     acagccatgc aaagcgagcg acagtttgct gctgatattc ggagacgacg ttttaaagcg       180
     caccaaatag ttawaataaa gtgaatcatt gaacattaac ctcgtgtatt cctttgggcg       240
     ctgttaaaag cgtattcaca gccaggcaac tcaaca                                 276
//
ID   BEL-36_SpEx-I repbase;    DNA;    INV; 6179 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6179
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6914-6914 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           916..6138
FT                 /product="BEL-36_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MPSGSDEGQENASVNATLKELISLRGTKKGQLTKFNN
FT                 FVTTLSEIPVQTVTSKQNKELIVRLSKIEGIIHEFDEIQTKIELMTEDPKQ
FT                 LIERDLFEDFYYSSIASAQEVAESYSKANPNQGIDVTSQPSYKSANTVCNH
FT                 NMNNIKLPTINLSTFDGNYLKWLEFRDTFDALINSNESISDINKFHYLRSS
FT                 LVGSATVVIKSIEFTAQNYKIAWELLCARYDNKKILINNHLKSLFDFEPIT
FT                 RESHRAILFMIDHILKNLRSLETLGLPTKKWDVLIIYIMSTKLDSVTLSKW
FT                 EEHKNSFTDYPSLDEFIKFIRNRADILETMFVNKNDKTNHKNSSSQKEINR
FT                 SDSDTNQKKLFHQRKSFVASANSKTTKHNNKNDHHTCPYCNQKHRIVECTT
FT                 FKDLSPQVRSSEAIKLNLCLNCLRRGHAVKDCRLDGNCRVCQQRHNSLLHV
FT                 DQDNDSNQTILKSLSISMPAQSSGQVLLGTAVVQVVDPRTKNTYLARALLD
FT                 AGSQSSFITENLKNTMNLTTQNTSFCITGINNAPVHLSNSCEVIVQSLIGP
FT                 FVAHLKCLVMPKITGHLPNIPVDILRLNLPENIKLADPNFSQPSEVDLLLG
FT                 AEVFFEAISPNKLKMGAGMPILQDTQFGWIVAGPLNMPTGSLNKSEIKNTV
FT                 CNFTKEINNNLTKFWNIEEVSTSKLPLSPHDEFCEQHFVENTTRLEDGRFS
FT                 VKMPFLENPETALGESYYMAEKRLLNIEKKLMKNSSLREQYHNFMKEYEDL
FT                 GHLTKIERPPFGYFIPHHAVIRDTSETTKLRVVFDASAKTTSKKSLNDILA
FT                 IGPTVQDELFDILVRFRQHKYVLCGDITKMYRQIMIDKSQRHLQLILWRDD
FT                 ESRPINILQLNTVTYGTAAAPFLSTRCLRQLADDCTDPMISEVIKHDFYVD
FT                 DLLTGCSNQNDLLHIHKGVTDTLASACFPIHKFRTNCPQIFTSSTESKSLD
FT                 LDKESNVLGVLWVPNTDSLKFSINIDTQTPTKRIILSNTCKIFDPLGLLSA
FT                 CTITLKLLLQKLWKLKLGWDDPVPHDIKRLWEKVTSHLNLFLSVSVPRYAM
FT                 CSSPVKTELHCFVDASQDAYAACVYIRSLDADDVITIRLLCTKTRVAPLKP
FT                 VTIPRLELCAALLGARLMNKVSNALRCKNNNKHFWSDSTITLGWIKTQPKL
FT                 LKAFVCNRVHEIHELTERNSWKYVPTDLNPADLASRGVAPSVLINSSLWWE
FT                 GPSFLLNSASKWPSYPNIKVDLPEIKVHNTQEIKLYNHKFINFDNYSSAIR
FT                 LKRVYAYVFRFVSNCKTSIKNKSPLNKDELQNSLNFLIKMAQRESFSHEID
FT                 TLSKGKSLKPKSHILNLSPFIDDIGVLRVGGRLKNAAIKYEKKHPALLDSK
FT                 HHFTKILMTADHLRLGHAGPQLLLCSFREQFWPIGGRTLARRIVRNCIICK
FT                 RFKAKTINPYFGDLPSSRVTEFYPFQICGTDFAGPFMISSKKGRGNSVSKS
FT                 YLCIFICFASKAVHLETVSDLSSAAFIACLKRFISRRGKPTHIYCDNGKNF
FT                 VGARNELGRMLRSGLRSVHDFTSNEGINFVFNPPYSPTFGGLWEAGVKSAK
FT                 HHLKRIAGNTSLTFEELSTLFTQIEAILNSRPLTPLSPDPNDLSPLTPGHF
FT                 LIGRPLTSLPAPSGEIKKPKNRYILIENLKQQFWTRWKQEYLSELQQRTKC
FT                 RLHQQNLQIGDLVVFKEEGLPPLKWKMGRVQQVYPGSDGVVRVADFKTYRG
FT                 TERRAVNKVCPLLTNQEEEAE"
XX
SQ   Sequence 6179 BP; 1938 A; 1255 C; 1158 G; 1828 T; 0 other;
     aaagtggcga ccgtgacagg acttgaatat taaatcgtca atatcaaatc agactaagac        60
     ttagtttgaa ctataacgga atatcggtaa cgacgcaacg ggatcgagac gaggaaggtg       120
     gctgccgggt gtgcttcggc tgcatttctg aatcagggga gtgctctttc cttcattcct       180
     tttatccaat agtcctcctt ttatctgtgt ttaagtgtga aattccgaga ttgcattaaa       240
     agaataactt agtggatttc aattcgcgag tttcacttat ttgcttctgc gctaatccgc       300
     tgcagtgtgc ctcatacgct taatcgtggt gtttagctat actttatgct tccaatcgca       360
     cagcgcaacg agtggttcca taattataat cgccgtctta attgctactg tgcataataa       420
     gtaggtacct acctacatgt aaatagtcat aattctgtgc gtgccgcttc ttaaatacat       480
     aattacagct aaacattcat ttcaacaact aacgtaagcg ttttcttccg tacgacagcc       540
     aatttctttg cttaaaaatc acgaatttat ttgtaactat acccacgttc tcaaatctta       600
     agctaattcc tttgtttcac gattaatcct ttttctagcc acttttcatg ccctaaaatt       660
     atctaagtcg acatcgtaaa aaaatattat cgtaaataaa aataggtatt gacgacaagt       720
     ggccgaacaa ttccaggaaa tcggcggttc acgtgcggtg cgcgtgacct tcactcgacc       780
     ggccggctgg agcgcaggtg caccgcccgc cagctgttgc atcgtacagc tacgcgaatt       840
     ggatcgtcgc ataatcaaca ttgtggtttg atgaacattt attatcttaa ctaatttgtt       900
     tatttgccct taacaatgcc ttctggaagt gatgaaggtc aagaaaacgc gtcggtaaac       960
     gcaaccttaa aggaattaat tagtttgaga ggtactaaaa aaggtcaatt aactaagttc      1020
     aataatttcg taactacttt gtctgaaatt cctgttcaaa ccgttactag taaacaaaat      1080
     aaagaactaa ttgttcggtt gagtaaaata gaaggtatta ttcatgaatt cgatgaaatt      1140
     caaaccaaaa tcgaattaat gactgaggac cctaaacaac ttattgagcg agatttattc      1200
     gaagattttt attattctag tatagcgtca gcgcaggaag ttgctgagtc atattcgaaa      1260
     gctaatccta atcaaggcat tgacgtaact agtcaacctt cttataaatc tgcgaacacg      1320
     gtgtgcaatc ataatatgaa caatattaag ctacccacaa ttaatttatc aacctttgat      1380
     ggcaattatc tcaaatggct tgaatttaga gacactttcg acgccttaat aaactccaat      1440
     gaatcaattt ctgacataaa taaatttcat tatttgagat catctttggt aggcagcgcg      1500
     actgtagtca ttaaatcaat tgaatttact gctcaaaatt ataaaatagc atgggaattg      1560
     ttatgcgctc gttacgataa taagaaaatt ttgataaata atcatttgaa gtctttattt      1620
     gatttcgaac cgataactcg tgagtcacac agggctattc tatttatgat tgatcatata      1680
     cttaaaaact tgagatcgct tgagacttta ggtctaccca ctaaaaagtg ggacgttctt      1740
     atcatctaca ttatgtctac gaaattggat tcagttactt tatccaaatg ggaagaacat      1800
     aaaaacagtt ttacagacta cccttctttg gatgaattta ttaaatttat acgtaatcgg      1860
     gcagacattc ttgagactat gtttgttaac aaaaatgaca aaacaaatca taaaaattct      1920
     tcttcacaaa aggaaataaa taggtccgat agtgacacta atcaaaaaaa attatttcat      1980
     caaaggaaaa gttttgtcgc ttctgctaat agcaagacca ccaaacacaa taataaaaat      2040
     gaccaccata catgtccgta ttgtaatcaa aagcatagga ttgtggagtg taccacattt      2100
     aaagacttgt cgccacaagt cagatcaagt gaagccataa aacttaatct ttgtttgaac      2160
     tgcttgagga gaggccacgc ggtaaaagac tgtcgcttag atggaaattg tcgtgtttgc      2220
     caacaaagac ataattcttt gctacatgtg gatcaagaca atgatagtaa tcaaacaatc      2280
     ttaaagtcat tatcaatttc gatgccagcc cagtcatcag gtcaagttct tctaggtact      2340
     gcggtggtgc aagtggtaga tcctagaact aaaaatactt atcttgcccg tgcgttgctc      2400
     gatgcaggca gtcaatcatc attcattaca gaaaacctaa agaatacaat gaacttaaca      2460
     actcaaaaca ctagtttttg catcaccggt atcaacaatg ctccggtaca tttatcgaac      2520
     agctgcgaag tgatagttca gtcattgatc ggtccctttg tcgctcacct taagtgttta      2580
     gtgatgccta aaataactgg tcacttacct aacattcctg tggatatttt gcgtcttaat      2640
     ctacccgaga acataaagtt agccgatcct aattttagtc aaccatcaga ggtcgatctt      2700
     cttttaggtg cagaagtatt ttttgaggcc atttctccca acaaacttaa aatgggggcg      2760
     gggatgccca tcctccaaga tactcaattc ggttggattg tggcgggacc tcttaatatg      2820
     ccaacaggtt cccttaataa atcggagata aaaaataccg tctgtaactt tactaaagaa      2880
     ataaataata acttaacgaa attctggaat atcgaggagg tttctacttc aaagctacct      2940
     ttatcacctc atgatgagtt ctgcgaacaa cattttgttg agaatactac ccgtttggaa      3000
     gatggtagat tttcggttaa aatgccattt cttgagaatc ctgaaaccgc gcttggcgag      3060
     tcttattaca tggctgaaaa gcgattatta aatattgaga agaaattaat gaaaaattca      3120
     agcttaagag aacaatatca taattttatg aaggagtatg aggaccttgg ccacctaacc      3180
     aaaatagaaa ggccaccttt cggttatttt atacctcatc atgcggtgat acgggacaca      3240
     agcgagacta caaaactccg ggtcgtcttt gatgcgtcag caaaaactac atctaaaaaa      3300
     tctttaaatg atatcctagc gataggcccc acagttcaag acgaattatt tgacatttta      3360
     gttcgatttc gtcaacataa atatgttctg tgtggtgaca taacaaaaat gtataggcaa      3420
     atcatgatag acaagtctca aagacattta cagcttatct tgtggcgcga tgatgagtca      3480
     aggcctatta acattttaca gcttaacact gtcacatacg gtaccgctgc cgcaccgttt      3540
     ttaagcacaa gatgccttcg gcaattagca gatgattgca cagatcctat gatatcagaa      3600
     gtcataaaac atgatttcta tgttgacgat ctgttaactg gttgttccaa ccaaaatgac      3660
     ttactacaca ttcataaagg tgtgacagac acgttagctt ccgcttgttt tcccattcac      3720
     aaattccgta ctaattgtcc tcagatattc acatcttcaa cggagagtaa atccctagat      3780
     cttgataagg aatctaatgt cttaggagtt ctgtgggttc caaacacaga ctcacttaaa      3840
     tttagcataa atatagatac acaaacaccg acaaaaagaa ttattctgtc taatacgtgc      3900
     aaaatatttg accctctcgg ccttctgagc gcttgcacaa tcactttaaa gctattgttg      3960
     caaaaattgt ggaaactgaa attagggtgg gatgatcccg tcccacatga tattaaaagg      4020
     ttatgggaaa aggtaacaag ccatcttaac ctttttcttt cagtatcagt tccaaggtac      4080
     gcaatgtgct cttcacctgt taaaactgaa ctccattgct tcgtggacgc ctcccaagac      4140
     gcctacgcag cgtgtgtgta catacgttcg ctcgatgctg atgacgtcat tactattaga      4200
     cttttgtgta ctaaaactcg tgtggcacct ttgaaacctg tgacaattcc gcgacttgaa      4260
     ttgtgtgcgg cactactggg tgctcgcctc atgaataaag tcagtaacgc acttcgttgc      4320
     aaaaataaca ataaacactt ttggtctgat tcaaccatca cattaggttg gattaaaact      4380
     cagcctaaat tattaaaggc gttcgtttgc aaccgtgttc atgaaataca cgagcttacc      4440
     gaaagaaact cttggaaata cgtcccgact gatcttaatc ccgcggactt ggcttcaagg      4500
     ggggtagcac ctagtgtact cataaattct tccttgtggt gggaaggccc gtcctttctc      4560
     ttaaactctg catcgaaatg gccttcttat ccaaacataa aagtagactt accagaaata      4620
     aaggttcata atactcaaga aataaagtta tataatcata aattcattaa ctttgataat      4680
     tattcaagtg ctataagact caaaagagtc tatgcttatg tttttcgatt tgtcagtaac      4740
     tgtaaaactt caattaaaaa caagtcaccg ttaaacaagg atgaactaca aaattctctt      4800
     aattttctca taaaaatggc tcagcgagaa tctttctcac atgaaatcga tactttatct      4860
     aaaggcaagt cccttaagcc taaatctcat attttaaatt tatctccatt tattgatgat      4920
     atcggtgtgt tgagagtggg cggtcgactc aaaaatgctg ctattaaata tgagaaaaaa      4980
     catccagcgt tgctagattc aaaacatcat tttacaaaaa tcttaatgac agctgatcac      5040
     ctgcgtctcg gtcacgccgg tcctcaactt ttactttgct cttttagaga acagttttgg      5100
     cctataggcg gcagaacttt agccagacgt atagttcgta attgcataat atgcaaaagg      5160
     tttaaagcaa aaactataaa tccatatttt ggtgatctgc cttcgagcag agttactgaa      5220
     ttttatccat ttcagatctg cggaactgac ttcgctggcc ccttcatgat ttccagcaag      5280
     aagggtcgcg gcaatagtgt atctaaaagc tatttgtgta tatttatttg ttttgcttca      5340
     aaagcagtgc atctcgaaac agtcagcgat ctcagctccg cagccttcat tgcttgcctt      5400
     aaacgattca tttccagaag aggaaaacct actcatattt actgcgataa tggaaaaaac      5460
     tttgtagggg caagaaacga attaggtagg atgttgcgat ctggtctgcg ttctgttcat      5520
     gattttacta gcaatgaggg cattaacttt gtgttcaatc caccttattc tcctactttc      5580
     ggtgggctat gggaagctgg cgtgaagagt gctaaacacc accttaagcg tattgcagga      5640
     aatactagtc ttactttcga ggagttgagt acgcttttta cacagataga agcgatcctc      5700
     aactcccgac ctcttactcc cttatcacct gaccccaacg atctttctcc tttaacccca      5760
     gggcacttcc tgatcgggcg gccgctgaca tcactgccag caccttcagg cgagatcaag      5820
     aagcccaaga accgatacat cttaattgaa aacttaaaac aacaattttg gacacgatgg      5880
     aagcaagaat atttatctga gctgcaacag cgtacgaaat gtcgcctgca tcagcagaat      5940
     ttacaaatcg gggacctggt agtgttcaag gaagaaggcc ttccacctct caagtggaag      6000
     atgggtcgtg tccaacaagt atacccgggc tctgacggtg tagtcagggt cgccgatttc      6060
     aaaacatatc gaggaacgga gcgacgcgct gttaacaagg tgtgtccgct cctaactaac      6120
     caagaagagg aggctgaata gaatcttgaa agtcgttgct cctttcaagg ggggcagga       6179
//
ID   BEL-36_SpEx-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-36_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-207
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6943-6943 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 207 BP; 56 A; 50 C; 43 G; 58 T; 0 other;
     tgttcgggcc gtcttcaagt catcgctgac gtcacgctgc ggggaaggcg gcgcacgcag        60
     gccgagcgcg gggacactcg ctatataatt cgcacaagga acgcacgcac atcgtcataa       120
     ttttttctta aatatttttt atgtaaattc aagcattaaa cacgtcaaat cttaaatctt       180
     cattattatt tgttcaaccc gtgaaca                                           207
//
ID   BEL-37_AA-I repbase;    DNA;    INV; 5913 BP.
XX
AC   supercont1.244;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_AA_;
KW   BEL-37_AA-LTR; BEL-37_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5913
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.244; Positions 1602611 1596699.
XX
CC   Positions [4943-5503] - Integrase core
CC   'ACCTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..5911
FT                 /product="BEL-37_AA-I_1p"
FT                 /translation="MNDLANTTAHNCQSCERPDTAEDEMVQCHLCQLWEHF
FT                 SCAGVDERVKASNIQFACKSCSDKQKASTSAANKKNLKSMTSSAKGSKAGS
FT                 RRSKQLPNIPGSATSSSRALLEEQLKMIDEERRLREQELEEQTELKRREME
FT                 ESKRQLQEKKKIAEEEKLLREQQLKEESAIKALQQKIRRESLEKRNEIIRQ
FT                 LAQTSSRGGSIPDSNEKVQGWLAEQVKVSVMPSRSVPCKSIVPEQEQQPDC
FT                 SSAVSEVASALQNLLNVPNYPSSCHLPLPAPRDNMTPPLNQISPDNGLHGP
FT                 SLRVSGLSQQQIAARQVLGKELPLFNGNPEDWPIFISCYEQSTATCGYSEA
FT                 ENLIRLQRCLKGHALESVKSRLLLPSSVQHVIQTLRTLYGRPELLIRSLMN
FT                 KIHHVPAPRHDRLETLMQFGLSVQNLVDHLKAANQQNHLSNPVLMQELVEK
FT                 LPGTMRLDWAVFKNKHQPATLETFGEFMSGLVTAASEVTFDLPAFENTPRV
FT                 EKRKPRDTGILHTHLSETESSRQWSSGPSATPTTSYRASKMCAACGRDGHR
FT                 VNECTQFKAASVDERWKLVQQKGLCRTCLNSHGKWPCRSWSGCDIDGCRQK
FT                 HHTLLHSSSPTLHDMNISASHVSAGEYNWPLFRVVPVVLYGNERSQITFAF
FT                 IDEGSSYTLLEESVAKQLDVSGPTDPLTLQWTGNVTRVESKSQLVNLKISG
FT                 KNGSCIHDLDHVHTVRHLVLPSQTLKYKDLAHRFPHLRGLPLEDYELVQPQ
FT                 LLIGLDNLRLCVPLKLREGGPKDPIGAKCRLGWSIYGCIPGQPKAPNIVNF
FT                 HGAAADPDHEMNEQLRDYFTLESVGVSACYVGEVQESADEIRAKRLLKETT
FT                 RRSVSGTSFETGLLWNTDSPNFPDSFPMAIRRMLALERRFEREPELGENVR
FT                 SQIASYEQKGYAHKAKLEELTSVDSNRVWYLPLGIVTNPKKPGKVRLIWDA
FT                 AAKVGGVSFNSRLLKGPDLLTPLPQVLCHFRQFPVAVCGDIMEMFHQIKIR
FT                 FPDCQSQRFVYRNKPTDHPQIYVMDVATFGSKSSPASAQYVKNLNAKEFEE
FT                 EFPRAALAIENSHYVDDYLDSFQTINEAIEVVNEVKLVHSRGGFTLRHFLS
FT                 NESDVLHGVGEFEEETVKNLALERGDKSESVLGMKWLPKEDVFVYSFALRD
FT                 DLAQILEERHIPSKREVLKVVMSLFDPLGFISFFLIHGKILIQDIWSRGTE
FT                 WDESIAQDLYTRWRQWTGLFSELDSVRIPRCYFRHPFPKNLDNLQVHVFVD
FT                 ASEAAYSCVAYFRLEYEGVVQVAFVSSKTKVAPLKTISIPRLELKAAVLGT
FT                 RMLNSIKKQHSYPIAQQFMWSDAGVCLAWIRSKNHRQYHQFVSVRVGEILM
FT                 STEPQDWRWVPSRINVADSATKWKSGPQLSMENPWFHGVQFLHESEERWPK
FT                 ERSLSDTNEELRRTQLQLGHFSPIIDISRFSSWVRLHRATAYVLRYIDNLR
FT                 RKRDGQQLELGILNQYELQHSEQALWKMAQGEAFPDEISLLTKSKGPPEGR
FT                 HCIVEKSSPIYKTWPFLDNDGILRMRGRIGAAPHAPTEAKFPAILPKQHLI
FT                 TFLIVDWYHRRFRHANRETIVNEIRQRFEIANLRSLVQKVAKKCIWCRVTK
FT                 AAPKPPVMAPLPEMRLKAFVRPFTFVGLDYFGPVLVKVGRSNAKRWVALFT
FT                 CLTTRAVHMEAVHSLSTESCIMAVRRFVSRRGPPREFWTDNATCFQGANNE
FT                 LKSEIKAKTKALALTFTSAQTSWNFIPPATPHMGGAWERLVRSVKVAIGAI
FT                 LDAPRKPDDETLETILYEAEAMVNSRPLTYIPLESADEEALTPNHFLLGSS
FT                 TGEKILPTEPVEQRAVLRSSWKLAQYISDQFWKRWLKEYLPVITRRSKWFD
FT                 EAKDLAVGDLVLVAGDTARNQWIRGRIEEVLPGRDGRVRQALVRTSSGTLR
FT                 RSATKIAVLDVVESSAPGSRLDSVSNPCQVHGRG"
XX
SQ   Sequence 5913 BP; 1649 A; 1441 C; 1473 G; 1350 T; 0 other;
     aacttcaaga tttttatggt cttggggaag cgtcaatatg aacgatctag cgaataccac        60
     ggctcacaat tgccaatcct gcgaacgacc ggatacagcg gaggacgaaa tggtccagtg       120
     tcacctttgc cagttgtggg aacatttcag ttgtgcaggt gtcgacgagc gagttaaagc       180
     atccaatatc caattcgcct gtaaaagctg tagcgataag cagaaagcat cgacgtcggc       240
     agcaaacaag aagaatctta agtcgatgac cagttccgcg aaaggatcga aagccggatc       300
     taggagaagc aaacaactgc cgaacattcc cggaagtgcg acctcgagca gtcgggcgct       360
     ccttgaagag caactgaaaa tgatcgatga agaacgacgt cttcgagaac aggagctgga       420
     agagcagacg gagcttaaac ggcgtgaaat ggaagaatcg aaacgacaac tgcaggagaa       480
     gaagaagatc gctgaggaag aaaaactgct tcgcgagcaa caactgaagg aagaatccgc       540
     tattaaggca ttgcagcaga agatcagacg tgaatctcta gaaaagcgga atgaaatcat       600
     tcggcagctt gctcagacaa gtagcagagg agggtcaatt ccagactcaa atgagaaggt       660
     ccagggatgg ttggctgaac aggtgaaagt gagtgtaatg ccatcaagaa gtgttccttg       720
     caagtcaatc gttccggagc aagaacaaca gccagactgt tcgtctgcgg tatcggaagt       780
     agcatcagcg ttgcaaaatt tactgaacgt tcccaattat cccagcagct gccatctacc       840
     tcttcctgca ccacgcgata acatgactcc gccacttaat caaatttctc cagacaatgg       900
     gcttcatgga ccaagtctaa gggtaagcgg cctttcccag cagcaaatcg cagcacgaca       960
     agtcttggga aaagaactgc cccttttcaa cgggaatccc gaagactggc ccatatttat      1020
     tagttgctac gaacagtcaa cagccacctg cggctattca gaggcggaaa atctcatccg      1080
     tcttcagcgg tgcctaaagg gacacgcttt agaatcagtg aagagccgat tactcctacc      1140
     atcgagcgtg cagcacgtca tccagacttt gcgtacgttg tacggaaggc cagaacttct      1200
     aattcggtct ctgatgaata aaattcacca tgttccagca ccaagacacg acaggctgga      1260
     gacgctgatg cagtttggac tctcggttca gaacctcgtg gaccatttga aagcagcaaa      1320
     tcagcaaaac cacctctcga acccagtact catgcaagag ctagtggaaa agcttccggg      1380
     tacgatgcga ctcgactggg ccgttttcaa gaataaacat caacctgcta cattggaaac      1440
     ctttggtgag tttatgtcag gactcgtaac agcagcgagt gaagtaactt tcgacctacc      1500
     tgcgtttgaa aacacgccac gagtggaaaa gcgaaagccg agagacacgg gcattctcca      1560
     cacccatttg tccgagactg aatcttcacg acaatggtcg tcagggccat cagcaacgcc      1620
     aacgaccagt taccgagcaa gcaaaatgtg tgcagcgtgt ggacgtgacg gccatcgtgt      1680
     aaacgaatgc actcagttca aagcggccag cgtagacgaa cgctggaaac tagttcaaca      1740
     aaaaggtcta tgtagaactt gtttgaatag tcatggcaaa tggccgtgcc gatcgtggtc      1800
     cggatgtgac atcgatggat gtcggcaaaa gcaccataca cttctccatt cttcctctcc      1860
     tacactccat gatatgaaca tatctgcgag tcatgtgtcc gccggtgagt acaattggcc      1920
     acttttccgc gtcgtaccgg tagtactgta tggaaatgaa cgatcacaaa tcacatttgc      1980
     cttcatcgat gagggttcct cgtatacctt gttggaggaa tccgtcgcca agcagctcga      2040
     cgttagtggt ccgacggatc cactgacctt gcaatggact ggtaatgtaa cgcgtgtgga      2100
     gtcaaaatct caactggtga atcttaagat ttccggtaaa aatggttcct gtattcatga      2160
     tctggaccat gtacatacag ttcgtcatct ggttctccca tcccaaacac tcaaatataa      2220
     agatctggcg caccgcttcc cacatttgcg tggcctccct ttggaagatt atgagcttgt      2280
     tcaaccacaa ttgttgattg gcttggacaa ccttcgactg tgtgttccgt tgaagcttcg      2340
     cgaaggtgga ccgaaggacc ctatcggtgc gaagtgtcgt ttgggctgga gtatctacgg      2400
     ctgcattccg gggcaaccaa aggcccctaa catagtcaac tttcatggcg ccgctgctga      2460
     tccagaccac gagatgaacg aacagctccg tgattacttc acattggaga gtgtaggtgt      2520
     ttcagcctgc tatgttggtg aggtacaaga atccgcggat gaaatacgtg cgaagcgact      2580
     gctaaaggag acaactcggc gctcggtatc cggaaccagt ttcgagactg gactgctgtg      2640
     gaacaccgat agtcctaact tccccgacag ctttccgatg gccatccgcc gtatgctagc      2700
     cctagaacgg agatttgaac gggaaccaga gctcggagaa aacgtgcgct ctcagattgc      2760
     gagctacgaa caaaaaggat acgcccataa agccaagcta gaggaattga cctcggtaga      2820
     ttcaaaccgc gtgtggtacc ttcctctggg tatcgtgacc aaccctaaaa aacctgggaa      2880
     ggtcagatta atttgggatg cagcggccaa agtgggcgga gtatccttca attcgagact      2940
     cctcaagggt cccgatctcc tcaccccact tcctcaagta ctgtgtcatt tccgccaatt      3000
     tccggtggca gtgtgtggcg acataatgga aatgttccac cagatcaaaa tccgctttcc      3060
     cgattgccag tcccagcgct tcgtttaccg aaataaaccg actgatcatc cccagatata      3120
     tgtgatggat gttgccacat ttgggtcgaa aagctcacct gcatcggccc aatatgtaaa      3180
     gaatctcaac gctaaagagt ttgaagagga atttccacgc gcggcgcttg ccatagaaaa      3240
     cagccactac gtagacgatt acttagacag ttttcagaca ataaatgaag caatagaagt      3300
     ggtcaatgaa gtcaaattag tgcattccag aggaggcttc acactgaggc attttctgtc      3360
     aaacgaatcg gacgtattgc acggagttgg agaatttgaa gaagaaacgg taaagaatct      3420
     ggcgttagaa cgaggtgaca aatcagaatc ggtgttggga atgaaatggc ttccaaagga      3480
     agatgtgttc gtgtattcgt tcgccttaag ggacgatctt gcgcaaattt tagaggaacg      3540
     acatatccca tccaaacgtg aggttcttaa agttgttatg agcttgtttg atcctcttgg      3600
     gttcatctcc ttctttttga tccacggaaa aatcttgatc caagacattt ggtccagagg      3660
     aaccgagtgg gacgaatcaa tagcccagga tctctacacg cgttggcgac aatggactgg      3720
     cttgttctcg gagttggatt ctgtgcgcat accacggtgc tactttcggc atccatttcc      3780
     aaagaacctc gataatcttc aagttcacgt cttcgtcgac gccagtgaag cagcatactc      3840
     ttgtgtggcg tacttccgtt tagaatatga aggagtcgtg caagtagcat ttgttagctc      3900
     caagaccaaa gtcgctccgc tcaaaacgat atcaataccc aggcttgaac taaaggcagc      3960
     ggttctgggt acccggatgc tgaacagtat caaaaaacaa cacagctatc caatcgccca      4020
     gcagttcatg tggagtgatg ccggtgtctg ccttgcttgg atacggtcca aaaatcatcg      4080
     tcagtatcat caatttgttt cggtccgcgt gggtgagata ttaatgtcaa ccgagccgca      4140
     agattggaga tgggtcccgt cacgaatcaa cgttgcagac tcggctacca agtggaagag      4200
     tggtccacag ctatccatgg agaatccttg gtttcatggc gttcaattcc tacatgaatc      4260
     cgaagaacga tggccgaagg aacgatcact ctcagatact aacgaagaac tccgccgcac      4320
     ccaattacag cttggacact tctctccaat aattgacatc tcaaggttta gctcatgggt      4380
     tcggcttcac cgtgccactg catatgtgct acgttacatc gataaccttc gccggaagag      4440
     ggatggtcaa caattggaac tcggcattct caaccagtac gaattacagc actccgaaca      4500
     agctttgtgg aaaatggcgc aaggcgaggc gtttcctgat gaaatttcac tgctaactaa      4560
     atcaaaagga ccaccggaag gacgccattg tattgttgaa aaaagcagcc caatctacaa      4620
     gacttggcct ttcctagaca acgacggaat tctgcgaatg aggggacgta tcggtgctgc      4680
     accacatgca ccgactgaag ctaagttccc tgccatcctc cccaaacaac acctaattac      4740
     atttctcatt gtagactggt atcaccgccg ttttcgccat gccaaccgag aaaccatcgt      4800
     caacgagatt cgtcaacgtt tcgaaatagc aaacctcagg tcactcgtgc agaaggtcgc      4860
     caagaaatgc atctggtgcc gcgtaacgaa agctgcacca aaaccaccag ttatggctcc      4920
     tcttccagag atgcgattaa aagcctttgt ccgacccttt accttcgtcg ggctggatta      4980
     ttttggaccc gtgcttgtca aggtgggtcg aagtaatgcc aaacggtggg tggccctatt      5040
     cacctgccta acaacgaggg ctgtgcacat ggaggctgta cattcgttga gcacggagtc      5100
     ctgcattatg gcagtgcgac gcttcgtgtc acgtcgcggg ccacctaggg agttttggac      5160
     ggacaatgcc acctgctttc aaggcgcaaa taatgagttg aaatcagaga tcaaagccaa      5220
     aacaaaagcc ctagccctta cctttactag tgcccaaaca agctggaatt tcattccccc      5280
     tgcaacaccg cacatgggcg gtgcatggga gaggcttgtt cgctcggtta aggtggcgat      5340
     cggtgcgatt ctggatgcac ctcgtaaacc tgatgatgaa acactagaga cgatactcta      5400
     cgaagctgag gccatggtga acagtagacc gctcacgtac ataccattgg agtcagcaga      5460
     tgaagaggcg ttgacaccca accattttct tctcggcagt tcaactggag aaaagatcct      5520
     acccacagaa ccagtagaac aacgtgcagt ccttcgaagt agctggaaat tagctcaata      5580
     catttccgat cagttttgga aaagatggct taaggagtat ctgcccgtca tcacaagaag      5640
     gagcaaatgg ttcgatgaag ccaaagacct ggcggtcgga gatttggttc tggtggctgg      5700
     cgatacggcg aggaaccagt ggattcgggg acgaatcgag gaagttttac cgggacgaga      5760
     cggaagagtg cggcaagcgc tcgtacggac atcgtcaggg accctacgaa gatcagccac      5820
     aaagatagct gttttggacg tcgtggagtc tagtgcacca ggctcgagat tggattcggt      5880
     ttcaaaccct tgccaggtcc acgggcgggg gta                                   5913
//
ID   BEL-37_AA-LTR repbase;    DNA;    INV; 524 BP.
XX
AC   supercont1.244;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_AA_;
KW   BEL-37_AA-I; BEL-37_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-524
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.244; Positions 1596698 1596175.
XX
SQ   Sequence 524 BP; 182 A; 91 C; 91 G; 160 T; 0 other;
     tgtgacgacg gggtccctcg ttacgactac accgatggat gcgatgcata aaccgataac        60
     cgacagcaaa tgaagatgac atattagggc acaaaaggaa gagagaaaac gtcattagaa       120
     aaagtgaaag tcatttgata cgcagaacta cggattgcga aggaaattta ttgaagctct       180
     aaaattatat attctatcta aaatagtatc ctaaaatcaa gtacggataa tttgttattc       240
     tacttagcct aatctagtac ggttggctat caatactatc gtaagtactg tcttaattat       300
     gaaatcttaa atctataact gaaattgttc attaggttgg aattagtgtg gaatcaattg       360
     cagactcaat tttcgcttct tttttgtcgg ttcactaaaa atgtgagtat ctacatattc       420
     aaattgtaaa atgaattact aaataaaccc ttcttgtagc ttgaagctta ctatcaacaa       480
     atttcgcgtt tgctctcaag acttagtgca acctaacccc aaca                        524
//
ID   BEL-37_AnFu-I repbase;    DNA;    INV; 5611 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5611
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 686-686 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..5581
FT                 /product="BEL-37_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MEGKDQARESETPKGKSVSSMVEQVEERAGASQAPES
FT                 KPQVAQASGRKRAVARKTNELTIGDKREEEEKDLRALQLQHERQMREIELA
FT                 HEREMAEMRFEFERKSAIAKRSSRERVTSERSDSSEGEEEEEEGRREKVNV
FT                 RKSSKILSRSQVQARKFMPKSLPSFDGKLENWPLFYNSYKDTTEACGYSHL
FT                 ENLQRLRECLKGDALEAVRSRLLEPKSVPGVIEDLRCLFGRPERLLKSLLT
FT                 KVRNTPPPDANKLATFITFGIAVKQLCDHLRAAQLEEHLNNPLLVDELVEK
FT                 LPADYQMQWVRYKRYNCGRALGVFANFIDEIMTDASEVAKFEEKKDERHRT
FT                 HKRQVQANVFAHSEMTDQSAKMKTCWMCKSEQHRVRDCDKFKSNAVSGRLE
FT                 LVSKLNLCKSCLNSHKGTCRFTKRCTFDNCNEEHHPLLHQQKAEKANEGCN
FT                 AHRDTRKETIFRVVAVTLRSGDITYDTTAFLDEGSSVTMLEDGVADKLQVK
FT                 GDHEPFTISWTAEMTRREENSRKVNILLSATGSPEQFELRGIRTVSKLVIP
FT                 KQELSFTKVKAQYEHLKDIPIQDKCAKVPRMLIGLDHLHLFAPIESRIGQP
FT                 NEPIGVKTKLGWTIYGPKPEKKPQVEYIHFHTTGQISNEKLHDVIRDCYRI
FT                 EESGISSARAVESDDDRRARDLLESTTTRIGERFKTGLLWKNDERNFPESF
FT                 TMAKRRLAGLERKLMKDSQLERAVRKLIDEYITKEYAHKITKKELEETPAS
FT                 SVWYLPLNVVQNPRKPGKIRLVWDAAATVRGVSLNSELLKGPDMLCSLPSV
FT                 IFPFRERRIGFGGDIKEMYHQIKISEEDKQAQRFLFTAGSGETDPQIFVMD
FT                 VATFGATCSPCSAQYVKNLNAEQHREQYPEACAAIQLRHYVDDYFDSADTV
FT                 DEALKLAKDVKYVHSRGGFLIRNWVSNAETFCTDMGEETAKSMIHLSDKSG
FT                 ENASDRVLGMIWEVKSDCFRFATPQIMKRDEHPTKRIVLACVMSIFDPIGL
FT                 LSPLTILGKMLVQDLWRTGCTWDEDINDEEYKKWQLWKEQMNAIEDVKIPR
FT                 SYFGNAVSRELAEIQLHVFADASENAYGCVAYFRVAIGNEVRCALVMSRTK
FT                 VAPLKQLTIPRMELQAALLGARLANTVKNNHRYSIAKQYFWSDSQTVLSWI
FT                 RSNQRKYKPFVAFRVGEILELSSVVDWKWVPTEENVADVLTKKISGCFEKE
FT                 SAWIKGPKFLYQPESDWPQQPKLSTDIKEELRATHLFHDVRLQESFEVVTR
FT                 VSKWTVMVRVVACAIRFISNLKRRRAGYNIECIKPTKSMEKILDIVQENAR
FT                 TRIQKKDLKTDVKFIRVPLKQEEYQKAECFLLKIAQAEAYADELKVLVKNQ
FT                 DKPSDQWYALEKSSEIYRLTPLLDENGIMRMDGRTKAAETLPFDLRFPIIL
FT                 PRGHEVTRKIIQHYHEKNGHAFRETVKNELRQRFYIEHLNAEVRKVISVCA
FT                 WCKVNKNRPTVPRMAPLPIERLSHHQRPFSCVGVDYFGPIEVVVGRSRQKR
FT                 WIVLFTCLVVRAVHLEIAHDLSASACLMAIRRFVCRRGPPMEFISDNGTNL
FT                 KAASKEIVQKIRDIEEECAEEVTSAHTSWRFIPPGTPHMGGAWERLVRTVK
FT                 EALGVLVSGVRLTDEVLLTSVLEAEDLVNSRPLVYVADDTVDSLTPNHFLR
FT                 GVSPNEPQLLPPVPHAAEALRDNYKRSQLLAEEMWQRWIKEYVTKLNDRTK
FT                 WIDESKPLKVGDLVYVVDGKNRKLWVRGIVEDTIISNDGRCRQAWVKTKSG
FT                 LFKRATSKLAVLEIGGNTCST"
XX
SQ   Sequence 5611 BP; 1846 A; 1083 C; 1434 G; 1248 T; 0 other;
     gtttcatcaa agatttctct tttctctcca aactacaaat atcatcattt gctgagcgat        60
     cgagcacgct aaaagggtaa ggtgaaaagg caaggcgatc gagcaacgaa gcataggacc       120
     agcaaagtta accgatccca gtaatcaccg aacaagcggc gatccagcga aacaggacgt       180
     tgaatttgta ggagaaaaca aatccatgga aggcaaggat caagccagag agagcgagac       240
     gccgaaaggt aagagcgttt catcgatggt tgagcaagta gaggaacgag cgggggcatc       300
     ccaagcgccg gaatcgaagc ctcaagtggc gcaggcgtca gggcgtaaac gagccgtcgc       360
     tcgtaaaacg aatgagctta ctataggaga taagcgagaa gaagaagaaa aagatttacg       420
     cgcgttacag ttgcagcatg agcgacagat gcgtgagata gagttggcac acgagagaga       480
     gatggccgag atgcgatttg aattcgaacg taaaagtgcg atagcaaaac gatcatcgcg       540
     agaacgtgtt accagtgaac gtagtgactc ttccgaagga gaagaagagg aagaagaagg       600
     aagaagagaa aaggtgaacg tgcgtaaaag ttcaaaaata ctaagtcgga gtcaagtgca       660
     agccaggaag tttatgccaa aaagtcttcc aagctttgat gggaaactcg aaaattggcc       720
     gttgttctat aacagctata aagacacaac tgaagcatgc ggttactcgc accttgaaaa       780
     tctacaacga ctaagagaat gtttaaaagg tgacgcatta gaagcggtaa gaagccgttt       840
     gctagaaccc aaatcagttc ccggtgtaat agaagacctg cgctgtttat tcggtaggcc       900
     agaaaggcta ctaaaatcgt tgctaactaa agtgcgaaat actccaccgc ccgacgccaa       960
     caaactggca acgtttataa cattcggaat cgcggtgaag caattgtgcg atcatttaag      1020
     ggcagcgcaa ttagaagagc acctaaataa tccactttta gtagatgagc ttgtagagaa      1080
     gcttcctgct gactaccaga tgcagtgggt acgatacaaa cgatacaatt gtggaagggc      1140
     attaggcgtg tttgcgaact tcatcgatga aattatgacc gatgcgtcgg aagtggcaaa      1200
     gttcgaagaa aaaaaggatg aaaggcatag aacacataaa cggcaagtgc aagcaaacgt      1260
     gttcgcacac tctgagatga cagaccagtc cgcgaagatg aaaacatgct ggatgtgcaa      1320
     gagtgagcaa catagggtgc gtgattgtga caagtttaaa agcaatgcgg tttcaggacg      1380
     actagagcta gtatcgaagc tgaacctatg taaatcatgc cttaacagcc ataaaggaac      1440
     atgccgattc accaaaagat gcaccttcga caactgtaat gaagaacatc atccattatt      1500
     gcaccaacaa aaagcagaga aggcaaatga aggctgtaat gctcatagag acacaagaaa      1560
     ggagacgatt ttcagagtag tagcagtgac actacgttca ggtgacataa cttacgatac      1620
     aacggcgttt ttagatgaag ggtcgtcggt gacgatgtta gaagacggcg ttgcagataa      1680
     gctacaagtg aaaggcgatc acgaaccatt taccatttcg tggacagctg aaatgacacg      1740
     tcgtgaagag aactcgagga aagtgaatat tctgctatcg gctacaggat cgcccgagca      1800
     gtttgagcta agaggaatac gcacggtgtc aaaactcgtg atacccaaac aagaattatc      1860
     gttcacgaag gttaaggcgc aatatgagca tcttaaagat attcctattc aagacaagtg      1920
     cgcgaaagtt cctagaatgc tcatcggttt ggaccatctg catttatttg ccccaatcga      1980
     atcccggata ggtcagccta atgaacctat aggtgtgaaa acaaaactag gctggacaat      2040
     ctacggacca aaaccagaaa agaaaccaca agtcgaatat atacatttcc acacgaccgg      2100
     tcaaatctcg aatgaaaagt tgcatgacgt gatacgagat tgttacagaa tcgaagaaag      2160
     cggaatttca tcggcgcgtg cagtagaatc agacgacgat agaagagcgc gtgatctatt      2220
     agaatcgaca acaactagaa tcggagaacg atttaaaaca ggtctactgt ggaaaaatga      2280
     tgaaagaaac tttcctgaaa gcttcacgat ggctaagcgg cgactggctg gactagaacg      2340
     caaactaatg aaagattcac aactagaacg agctgtgcgc aaactgattg atgaatatat      2400
     aacgaaggag tacgcgcata agatcacgaa aaaggaactt gaagaaaccc cagcaagcag      2460
     tgtgtggtac cttccgctga atgtagtcca gaatcctcgc aagccaggga aaataagatt      2520
     ggtgtgggat gcagcggcaa cagttcgagg cgtgagcttg aattcggaat tactaaaagg      2580
     gcccgacatg ttgtgttcac taccatccgt gattttcccc ttccgtgaac gacgtattgg      2640
     attcggtggt gacattaaag agatgtacca ccaaatcaaa atcagcgaag aagacaaaca      2700
     ggcacagagg ttcctgttca cagctggtag tggagaaaca gacccgcaaa ttttcgtgat      2760
     ggacgtggcg actttcggag caacgtgttc cccttgtagt gcgcaatacg taaaaaacct      2820
     aaacgcggag caacatcggg agcaatatcc agaggcttgt gcagcaatac aacttcgtca      2880
     ttacgttgac gactatttcg acagtgccga taccgtagat gaagcgttga aactagcgaa      2940
     ggatgtaaaa tacgttcact cgagaggagg ttttctaatt agaaactggg tgagcaacgc      3000
     ggaaacgttc tgtacggaca tgggtgagga aacggctaaa tcaatgatcc atctaagtga      3060
     caaatccggc gaaaacgcat ctgatcgtgt tctaggtatg atatgggaag tgaaaagtga      3120
     ttgctttagg tttgcaaccc ctcaaatcat gaaacgagac gaacatccta caaagcgtat      3180
     cgtgttagca tgtgttatgt ctatattcga tccaatcgga ctcttatcac cacttaccat      3240
     tttaggaaaa atgttggtac aggacttgtg gagaaccggg tgtacttggg acgaggacat      3300
     taacgatgaa gaatacaaaa aatggcaatt atggaaagag cagatgaatg ctatcgaaga      3360
     cgtgaagatt ccgcgatctt actttggtaa tgcagtgtca cgcgaattag ccgaaataca      3420
     acttcatgtg tttgctgatg caagtgaaaa cgcgtatggt tgcgtcgcgt attttcgagt      3480
     cgcgatagga aacgaagttc gttgtgcttt agtgatgagt cgtacaaaag tggccccttt      3540
     gaaacagcta accattcctc gcatggaact acaggcagcg ttattaggcg ctaggctagc      3600
     aaatacggtg aaaaataatc acaggtactc aatagcgaaa caatactttt ggagtgacag      3660
     tcaaaccgtg ttatcgtgga taagatccaa ccagcgtaaa tacaagcctt tcgtggcatt      3720
     tcgtgtagga gaaatactag aattatcttc agtggtagac tggaaatggg ttcctacgga      3780
     agaaaacgtc gcggacgtgc tgactaagaa aatttcggga tgtttcgaaa aggaaagtgc      3840
     atggattaaa ggaccaaagt ttctctacca acctgaatcg gattggccgc aacaaccgaa      3900
     attatctaca gatatcaaag aggagttacg agcaactcat ttgttccatg atgtgcgact      3960
     acaagaatca tttgaagttg taacgagagt ttcgaaatgg acagttatgg tacgcgtggt      4020
     ggcttgtgca attcgattta tatctaactt gaaaagaagg agagctggtt acaatatcga      4080
     atgtattaaa ccaacaaagt ctatggagaa aatattggac attgtacagg aaaacgcaag      4140
     aacaaggata caaaagaagg acttaaaaac agatgtgaaa ttcatacggg ttccgttgaa      4200
     acaggaggag tatcagaagg cggaatgttt cctacttaag attgctcaag cagaagctta      4260
     tgcagatgaa ctcaaagtgc tcgtcaagaa ccaggataaa ccatcagatc agtggtatgc      4320
     gttggagaaa agtagtgaaa tttaccgttt gacgccactc ttagatgaaa acggaataat      4380
     gcgaatggat ggtaggacga aagcagcgga aactttgccg ttcgatttaa ggtttcctat      4440
     catattacct agaggacatg aagttacgag gaaaattata caacattacc acgagaaaaa      4500
     cggacacgca tttcgcgaaa cagtgaagaa cgagttaagg caacggttct acatcgaaca      4560
     tttaaacgcg gaagttagga aagtcatcag tgtctgcgcg tggtgtaaag tgaataaaaa      4620
     tcgtcctact gtacccagga tggcaccctt gccaattgaa aggctgagtc accaccaacg      4680
     cccgtttagt tgcgtaggcg ttgactattt tgggcccata gaagtggtag tagggcgcag      4740
     cagacaaaaa aggtggatag tcttattcac ttgtttggtg gttcgtgcag tccatttgga      4800
     gatcgctcac gatttgagcg cttcggcatg cttgatggct atccggagat tcgtgtgtcg      4860
     tcgaggaccg cctatggagt ttatttcgga taacggtacc aacctgaaag ccgccagcaa      4920
     ggaaatcgta caaaaaatcc gcgatatcga ggaagaatgc gcggaagaag tcacgagcgc      4980
     tcacacaagc tggcgattta ttccacccgg aactccgcat atgggtggcg catgggagcg      5040
     gctagttaga accgtgaagg aagctcttgg agtgttggta agtggcgtaa gactaacaga      5100
     cgaagtcctt ttaacttccg ttttagaagc agaagatttg gtaaactctc gcccgcttgt      5160
     atacgtggct gatgacacag tggattcgtt gacaccaaac cacttcttac gaggcgtatc      5220
     tccaaatgag ccccagcttc taccgccagt tccacatgca gcggaagccc ttcgtgacaa      5280
     ttataaacgc tctcagttgc tagcagagga aatgtggcag cgatggataa aggagtatgt      5340
     gacgaagcta aatgaccgga ctaaatggat tgatgaatcg aaaccgttga aagtgggcga      5400
     ccttgtgtat gtagtggacg gtaaaaatag aaagttgtgg gttagaggca ttgtagaaga      5460
     cacgatcata tcaaacgacg gaagatgtag acaggcctgg gtgaaaacga aaagtggatt      5520
     gtttaaaagg gcaacgtcaa agctagcagt tcttgagata ggaggtaaca cttgctcgac      5580
     ctaagcgata gaccaaggtt acgggtaggg g                                     5611
//
ID   BEL-37_AnFu-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 740-740 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 304 BP; 111 A; 52 C; 74 G; 67 T; 0 other;
     tgttgcgaac aaagctagcc gcgcgatgtt ttaggtaaga ttctacctaa acaccactag        60
     ataaagaact cgatcatacg gtttaaagga ctagcttaag aagagaagcg ggcgatataa       120
     acacagtgcg taggccacgt gaaaaggata agtcaggacg aataggaagt aggaaaaaag       180
     ctttctttcc aaaagacgaa gcgaacgcgg caggtcgtga agaggataca aatctttgat       240
     tgtgttaaaa ataaatccaa agagtattta atcaagccgc gtaaattttg tggtagtcgc       300
     caca                                                                    304
//
ID   BEL-37_CQ-I repbase;    DNA;    INV; 5926 BP.
XX
AC   AAWU01044402;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_CQ_;
KW   BEL-37_CQ-LTR; BEL-37_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5926
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 227-227 (2011).
XX
DR   Genome; AAWU01044402; Positions   10784    4859.
XX
CC   Positions [4973-5557] - Integrase core
CC   'GGATG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..5926
FT                 /product="BEL-37_CQ-I_1p"
FT                 /translation="MSDQQTPTGVSSGITRRNILDALTGSKGSVVKTVAQQ
FT                 KADQEAQQQKRRMEKNLEALEDRRDMLVEKLERMKGSLEEVTVSVHLLKLY
FT                 EETLRRSADDYDKNYSDIIVLLPKEKRAEQRGKYAAFEKLHSTVYEKLQAR
FT                 IAESELTTKLLELPKAPAAAVAPPQPVYIQAPAPVPHLQAPFPTFNGKPEG
FT                 WYSFKNLFQSIMSRYTNDPPAMKILYLRNALVDDAKDKIDQDVVNNNDYDA
FT                 AWRILEDEYEDKRLILDTHIDAILDCPKVAKESRGKSISKLVEVCAKHSEA
FT                 LAGHGYPVEGLAELVMVNVIYKKLDKETQEQWELKIGSGALPEFEEFMEFL
FT                 RERGRVLQRTNRSQQQPAQQSTVAPSKQRQAFGQKAQPLLKSFVQATTEVC
FT                 GHCKEDHPIYRCSTFRDLSVPERKSVATKANLCYNCLKARHRVSDCESKTL
FT                 CKVQGCGRKHHSLLHDSGTRSNQGQVKKEESSQCLPVAPSVPAGGPATAPA
FT                 QQSSAVSLCANVGGAKHQVLLSTAEVMVIGQADSTVKCRALLDSGSDSNII
FT                 TEKLANKLKLKMDRVDLPVSGLNDIQTRVKYLLSTKIESCVNAFASPVLDF
FT                 LVVPRITSNLPVVEIDVAAWPLPPGLQLADPKFHTPGEIDLIIGNEIFFDL
FT                 VKSGRVKIGRNAPTLAETELGWVLGGAVPTRKAKPCPRVCQLNHFEEELNK
FT                 TMVKFWEIECVHPETDLTVAEVAVEEHFQRTHSRDAEGRFVVRLPFNNQKS
FT                 QLGDSYNNARKRLDKLMISLARNPAKRVEYSAFLTEYLTLGHMKEVQHVND
FT                 GGYYIPHHAVYKASSSTTKTRVVFDASAKTTSGLSLNDTLDVGPTVQNDLL
FT                 SIILKFCTHPVVLTADIPKMYRQVKLHQENCKYQRILWLDDDRQLKVYELQ
FT                 TVTYGLASSPHHATRALVQLATDEGKDLPLAARVVKRDSYVDDFLTGGSSV
FT                 AEVVQIYKELTELLRRGGFGVHKFCSNRTEVLRAIPSELHEKQVDFGESDV
FT                 NNTIKTLGLIWNPLEDYFVFRVPRPINEEWTKRIVLSEISSLFDPCGFLGP
FT                 IITLCKLVMQDVWVRALTWDQPLPVELSLRWRLIRVQLPAISKMRKKRCLI
FT                 APDAVNVQLHGFSDASKRAYGGVLYIRSVNKRGEISVCRAASKSRVAPLKE
FT                 QTIPRLEACGAKLLAELTQKVMAALEVPFDDVVLHCDSKIVLCWLKKPPSA
FT                 LKQFVSNRVAAIQKLTREFTWRFIRSEHNPADVLSRGALPEDLLEHELWED
FT                 GAPELWEHQLPEDLSEPFDESQLPELKPAIVLTIVNPKPAIDFTRCSNYRR
FT                 LQRSWVYVERYINLAVHKRPETSGISADEVARAEKTILAVVQKQAFGDLLK
FT                 LLRSNSNKQHSWSNLAPFLGEDGLIRVGGRLKYSAIPYDGKHQVLLPDGHH
FT                 VTKILVRKLHEENFHVGQNGLLAIVRERYWPLRAGLLIKQVVTKCQICRRQ
FT                 NPKPGSQFMGNLPGYRINPAPPFSKVGIDYAGPFMLKTGGRGSRLQKAYVV
FT                 VFVCMVVKAIHFELVTNLSTDNFIAALQRFASRRGLPSDIHSDNATCFAGG
FT                 NNELAALRELFNSQLHKNKLEEFCSLKGIRWHFIPPRSPHFGGIWEAGVKS
FT                 MKHHMKRVVGETKLTYEEMTTFLAQTEAILNSRPLCPMSEDPNDLTVLTPS
FT                 HFLISRSGVALPEPSYADEKVGRLSRWQHIQYMQQHFWKRWSGEYLHQLQG
FT                 RPKWNAGVKEFKVGELVLLIDENLPPQQWRRGRIVATHPGEDGAVRVVTVK
FT                 TATSEFKRAITKVALMPSVEPDASTGGE"
XX
SQ   Sequence 5926 BP; 1432 A; 1634 C; 1740 G; 1120 T; 0 other;
     ttttttggtc cgttctcccg gatagtattc ggagaatttg gagctggttc ccggttcgtg        60
     agtgattagc ccggtgctaa gttcggctgc ggccaaagtg aagtcggttc ttgtgtccgt       120
     ggcacaagtt ccggaaaacc gccatcttgg gcgaagtgga ctcttgggtt ggtgctacgc       180
     caccaagaaa gtgcgtgccc gtggcacgga agttttagaa ccagttgaga acgctcgact       240
     gtacggaagt ttggggtcgg cgctacgcca ccaagtgtgt gtgtgtgtgc ccgtggcaca       300
     aatggaaaaa gtggtcgcca ttttggcgtg gaaaactgag tggtcgccat tttggcgtgg       360
     aaaactgacg ccggttgcga tcggctgcag tagtgtgtgt gcgtgtgtgc ccgtggcacg       420
     tcgaaaagga cgccatcttg gcaagtgcta acaaagtccg tctctgcgcg agaccagtga       480
     gtgcgagaaa acaaaaagtg gccattgaag cggcaaaaag tgtgcacgga tgagcgacca       540
     gcagacgccc acgggagtgt cgtccggaat tacgaggagg aatattctcg acgctctgac       600
     gggatccaaa ggaagcgtgg tgaaaaccgt cgcacagcag aaagccgacc aagaagccca       660
     gcagcagaag cgcaggatgg agaagaactt ggaagcgttg gaggatcggc gggacatgct       720
     cgtcgagaag ttggagcgga tgaaaggttc gctggaggaa gtgacggtga gtgtccacct       780
     gctcaagctc tacgaggaga cgctgcggcg tagcgcggac gattacgaca aaaactactc       840
     cgacatcatc gtcctgctgc caaaggaaaa gagagccgag cagcgtggga agtacgcagc       900
     gtttgaaaag ctgcacagta ccgtgtacga aaagttgcaa gcgaggatcg ccgagtcgga       960
     gctcaccacg aagctgttgg aactgccgaa ggcacccgcc gccgcagttg cccctccgca      1020
     acctgtctac atccaagccc cagcgccagt cccgcacctg caagctccgt tccctacttt      1080
     caacggcaaa ccggagggct ggtacagttt caagaacctg ttccagagca ttatgtctcg      1140
     ttacacgaac gaccccccag ccatgaagat tctgtacctc cgaaatgcgc tcgtcgacga      1200
     cgccaaggac aagatcgacc aggacgtcgt aaataataac gattacgacg cggcctggag      1260
     gattttggag gacgaatacg aggacaaacg cctcattctg gacacgcaca tcgacgccat      1320
     tctggattgc ccaaaagtcg ccaaggagag tcgcggcaag tccatctcca agctggtcga      1380
     ggtgtgtgcg aagcacagtg aagctttggc tggtcacggg tatccagttg aagggctagc      1440
     cgagctagtg atggtgaacg tgatctacaa gaagctcgac aaggagacgc aagagcagtg      1500
     ggagctgaag atcggcagcg gagcgttgcc ggaattcgag gagttcatgg agttcctgcg      1560
     ggaacgtggg cgtgttctgc agcgcacaaa tcgctcccag cagcaaccgg cgcagcagtc      1620
     aacagtggcc ccaagcaagc aacgccaagc gttcggacag aaggcccagc ccctgctcaa      1680
     gtcgttcgtg caggccacaa cggaagtgtg tggccactgc aaagaggatc acccgatcta      1740
     ccggtgctcg acgttcagag acctgagtgt accggagcgc aagtccgttg ccaccaaggc      1800
     aaacttgtgt tacaactgct tgaaggcgag acaccgggtg agtgattgcg agtccaagac      1860
     tctgtgcaag gtgcaaggct gcggccgcaa gcaccacagt ctcctgcacg acagtggtac      1920
     acgaagcaac caaggtcaag ttaagaagga agaatcgagc cagtgcttgc cagtggcacc      1980
     ctcggttcca gcgggcggtc cagcaaccgc tccagcgcag cagagcagcg cggtgtccct      2040
     ctgtgcaaac gtcggcggtg cgaagcacca agtgctgctg tcgacggcgg aagtgatggt      2100
     gatcggccaa gccgattcca ctgtcaagtg tcgtgcgctg ttagactcgg ggtctgacag      2160
     caacattatc accgagaagt tggcgaacaa gcttaagctg aagatggatc gcgtggacct      2220
     accggtgagc ggtttgaacg acatccagac ccgagtgaag tacttgctgt ccacgaagat      2280
     cgagtcctgc gtcaacgcct tcgcctcacc cgtgttggat ttcctggtcg taccacgcat      2340
     cacgtcgaac ttacccgtgg ttgagatcga cgtcgcagcc tggcccctgc cgccaggact      2400
     gcaactagct gacccaaagt tccacacacc tggagagatt gaccttatta tcggcaacga      2460
     aatcttcttt gatttggtca agagcggtcg cgtcaagatc ggccgcaacg cgccaacatt      2520
     ggccgagacg gaactcggat gggtcctagg aggagcggta ccgaccagaa aggccaaacc      2580
     atgcccgcgt gtgtgccaac tgaaccactt cgaggaggag ctgaacaaga cgatggtgaa      2640
     gttttgggag atcgagtgcg tccacccaga gaccgacctg accgtagctg aggttgccgt      2700
     cgaggaacac ttccagcgca cccactcccg agatgccgaa ggccggttcg tcgtccggct      2760
     tcctttcaac aaccagaaga gtcaactggg cgactcgtac aacaacgcgc ggaagcgctt      2820
     ggacaagttg atgatctcgt tggccaggaa cccagccaag cgtgtcgagt attccgcgtt      2880
     cttaaccgaa tatctcacac tgggccacat gaaggaagtg caacacgtga acgacggagg      2940
     ttactacatc ccacaccacg cggtgtacaa ggcctcaagt tcgaccacca agacaagagt      3000
     cgttttcgac gcttcggcga agaccacgtc tggtctgtcg ctgaacgata ctctggatgt      3060
     tgggccaaca gtgcaaaacg acctcctgtc gatcatcctg aagttctgca cccacccggt      3120
     cgtgctgact gccgacatcc caaaaatgta ccggcaggtc aagctgcacc aagaaaactg      3180
     caagtatcaa cggattttgt ggttggatga cgacagacag ctgaaggtct acgagttgca      3240
     gacggtgacc tacggcctcg ccagctcacc tcaccacgca acaagggcat tggttcaact      3300
     ggccacggat gaaggcaagg atctaccgct cgcggcgcgg gtggtcaagc gggacagcta      3360
     cgtcgatgac ttcctgaccg gtggttcgtc cgtcgccgaa gttgtccaaa tctacaaaga      3420
     actgacggag ctgctgcgcc gaggaggttt cggcgtccac aagttctgct cgaacagaac      3480
     cgaggtacta cgagcgattc catctgagct gcacgagaaa caggttgatt tcggggagtc      3540
     cgatgtcaac aacacaatta aaactctcgg actcatttgg aacccgctcg aggactactt      3600
     tgtctttcga gtgccccgac ccatcaacga ggaatggaca aaacgaatcg tgctgtcgga      3660
     gatctccagc ctgttcgacc cctgcggctt ccttgggccg ataatcacgc tgtgcaagct      3720
     ggtgatgcaa gacgtctggg ttcgtgcgct aacctgggac caaccacttc cggtcgagct      3780
     ttcactgcgg tggaggctaa ttcgagtgca gctgccagct atcagcaaga tgcggaagaa      3840
     gcgatgcctg atcgccccgg atgcggtgaa cgtgcaactc cacggctttt cggacgcctc      3900
     gaagcgagca tacggtggtg tgctgtacat ccggagcgtc aacaagcgcg gcgagatcag      3960
     cgtgtgccga gctgccagca aatcacgagt ggctccactc aaggagcaaa caatcccccg      4020
     gctggaagcg tgcggcgcaa aactgttggc ggagttgaca caaaaggtca tggccgccct      4080
     ggaagttcca ttcgacgacg tggtgcttca ctgcgactct aagatcgttc tgtgctggct      4140
     caagaaacct ccatcggcac tgaagcagtt tgtgtcgaac cgtgtagccg caatacagaa      4200
     gttgactcga gagttcacgt ggcgtttcat ccgatcggaa cacaatccag ccgatgtgct      4260
     ctcccgggga gcgctgccgg aagacctgct ggagcacgag ctttgggagg acggcgcacc      4320
     tgagttgtgg gaacaccagc tacccgagga tctgtccgag ccgttcgacg agtcccaact      4380
     accagaactc aagccggcga ttgtcctgac gatcgtcaac ccgaaaccag cgatcgactt      4440
     tacgagatgc agcaactacc gacgactgca gcggtcgtgg gtgtacgtcg agcgctacat      4500
     caacctggcg gtgcacaagc ggcccgaaac atctggcatc tcggcggacg aggtggcccg      4560
     agcagagaaa accatccttg cggtggtcca aaagcaagca ttcggtgacc tgttgaagct      4620
     gctgcggtcg aactccaaca agcaacactc gtggtccaat ctggcgccgt tccttggaga      4680
     ggacggtctc atccgagtcg gtggccgttt gaagtattca gcgataccct acgacggcaa      4740
     gcatcaggtg ctcctacctg acggccacca cgtcacgaag atcctggttc gcaagctgca      4800
     cgaagagaac ttccacgttg gccaaaacgg actgttggcc atcgttcgcg aacgttactg      4860
     gcccttgcga gcaggtctgc tgatcaaaca agtcgttacg aagtgccaaa tctgtcgcag      4920
     acagaaccca aagcctggta gtcagtttat gggcaaccta ccaggatacc ggatcaaccc      4980
     cgcgccacct ttctccaagg tgggcatcga ctacgctggt ccgttcatgc tgaagaccgg      5040
     aggacgagga tcaaggctgc agaaggcgta cgtggtcgtc ttcgtatgca tggtggtgaa      5100
     ggccatccat ttcgagctcg tgaccaacct ctcaaccgac aacttcatcg ccgcgctgca      5160
     gcgattcgct agccgacgtg ggctcccaag cgacatccat tcggacaacg ccacttgctt      5220
     cgccggtggc aacaacgagc ttgcagccct tcgagaactg ttcaacagtc aactgcacaa      5280
     gaacaagctg gaggaatttt gcagtctcaa gggcatccgc tggcacttca ttccaccgag      5340
     aagcccccac ttcggaggga tttgggaggc aggagtgaag tccatgaaac accacatgaa      5400
     gcgggtcgtc ggcgagacca agctcacgta cgaggagatg acgacgttcc tggcacagac      5460
     ggaggccatc ctcaactccc ggcccctgtg cccgatgtct gaagacccga acgatttgac      5520
     ggtgctgacg ccgtcgcact tcctgatcag ccggtctgga gtggctctac cggaaccgtc      5580
     gtacgcggat gagaaagtcg gacgtcttag cagatggcaa cacatccagt acatgcagca      5640
     acatttttgg aaaagatggt ctggcgagta cctccatcag ctgcaaggac gaccgaagtg      5700
     gaacgctgga gtcaaggagt tcaaggttgg tgagctggtc ctgctgatcg acgagaactt      5760
     gcctccgcag cagtggcggc gcggacggat cgtcgctaca caccccggag aagacggcgc      5820
     tgtcagagtg gtgacagtga aaactgcaac gagcgagttc aagcgagcaa tcaccaaggt      5880
     tgctttgatg ccttcggttg agcctgacgc ctcaacgggg ggagaa                     5926
//
ID   BEL-37_CQ-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   AAWU01044402;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_CQ_;
KW   BEL-37_CQ-I; BEL-37_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 228-228 (2011).
XX
DR   Genome; AAWU01044402; Positions    4858    4625.
XX
SQ   Sequence 234 BP; 62 A; 52 C; 51 G; 69 T; 0 other;
     tgtttgggca cactgcccaa ggaaaagtag atgttgtgtt ttgtttgcac ctttatttct        60
     tggcccgtta aaacggcgga caaattttga tggcccttct ggcaaccctg taagcagaga       120
     aaatacagaa taaaccgaac ctttgttgag acaagtcgcg cggtgttttt ctcccgtcag       180
     aacccctcca ttttctcgcg gattttaaaa agtgttaaac tgagctatcg aaca             234
//
ID   BEL-37_DTa-I repbase;    DNA;    INV; 5422 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5422
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5648-5648 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 5422 BP; 1478 A; 1365 C; 1265 G; 1314 T; 0 other;
     ttttggtcct tcgagccgga tccatcggtc tcgtttagtt ttctaacaaa ttagtggtaa        60
     aatcctcgtt cctaaacttc acattttggt gaaatcgggc ttaacctcaa tcattgaaat       120
     gtcgctgcaa gcagtgaaaa cacaacttgg gttttgcaag tcgcaaatca cacgtgcaca       180
     tggtcgggcc tcggagttca tatcgaccgt aacagctttg gacactttgg aacatcatct       240
     tcgccgtatc atggacacgt tcgatcaact tctaaagctg tcggcggaaa cttactccct       300
     ctctgaagac gaggatttgg ccgaacccga tgatctactc gagtacgaaa ccaagtacta       360
     cgaattgcac gctttgttat cagatgccat agcagaaagg aaaaggacaa acccacattc       420
     atctacacta atcgccaacg gggaggaccc acttgaacga ctggctacct cgcaggcaca       480
     gctggtggct tcgcagacac agttcttgga gcaggttcgg gaatcacata cacacacgga       540
     cttgaggttt gaaaagatca agattccaac ttttagaggc aactacgaag attggcctca       600
     attttgtgat ctctttctgg gatcggttga tcgacgagaa aacctaacaa gctgccagaa       660
     attccactac ttgaagtctt atttggatgg agatgctctc aacttggtga aacacattgc       720
     cgtcaccgag gagaactatg cggaagcctg ggataaactc gtccatcggt acgacaaaaa       780
     ggcacttata acgcgctcgt ttattgcggg atttttgtcg ttacccaacg ttgcagcttc       840
     gggagtggct gccctgcgca agctggccga tacagcagac gaatctattc gaggactaca       900
     cgcacttgga tgtgatcagc gggacccatg gctaatccac atactactag gcaaattgga       960
     tatggacaca cgccaatcat gggcggaacg gcaagaaggc tgctcgaacg acgtgaagat      1020
     cgggaccttc ttggaattct tgttctccag atgcgacgct ctggaatctt gtcaatcaac      1080
     tcccaaggca tacgggaggc gcaccgccaa cgtacacatc gctggcgaag cttcaaaacc      1140
     atcacaaaaa ctttgtattg tctgcaccca accacactcg ataatggctt gcactcaatt      1200
     tctatcaatg gaaataccgg atcggcgatc attcgtaaag cttcacaaat tgtgctttaa      1260
     ttgtttgagt cgcaaccatg tcgctaggca gtgcacttcg aaattcagat gtcggctctg      1320
     caaaggatca catcatacat tggtacatca agaatcacaa ggggaacgtg agcccccagc      1380
     cgctaactca tcggacagca gcggcacaag aaccgaagct ctaccaaccg gaatatcgaa      1440
     cttctccgta gagactgcat ttcttgctcg agcgcagacc atgatgccca ccatactagc      1500
     ttatgtggtg gacagatgtg gtacacggac gctgtgccga attcttttgg attcgggatc      1560
     aaccattaca ttggccacgg aggcattcat tcaacgcatt ggcgcacctc gtacccacgc      1620
     gcgcatttcg gtaatgggtc tttctgctca agccgcaggt acaactcgag gatgtgcaaa      1680
     aattcaactg caatcaagag tctcgcagga cgtccaggag attaaagttc taattatgag      1740
     ttctttaact gcatctgtac cagccgaaga ggtacaaata cacaattggc gagacataca      1800
     aggattagat ttggctgacc ccacgttcgc cacccctgga gacattgatg tcattatcgg      1860
     atcggaccag ctatggagct tctttacggg ccaacgaaaa ctgttaagta aacctaattt      1920
     attcgcactt aacacgttct ttggttgggt aattgcaggt tccggggact tacaacaggt      1980
     aactgaaaaa ccggaacagg cgcatcatgc tcaggtcgat ttggacgagg cggtgagggc      2040
     attcatggaa atggacacta ttcagcccag tcaggcaact atcgatgcat gtgatcccgt      2100
     ggagcagctc tttgtcgaca cccacaaacg agatcaggac ggcgtataca ttgtggagta      2160
     cccgttcaag aaggacatgc cgacaattca ggacccttct ctgcgtcagg ctttgaatcg      2220
     atttgcaatg ctggaaatca aatttcgccg gaacccagca ttgaaaaatc aatattgtga      2280
     atttatgaag gattatttac aacgggggca catggaagtg ctggataaac cccagctcaa      2340
     cgtgccagag aaaaattgct tttatctagc tcaccatgcc gtcctcaaag cggaaagttc      2400
     cacaaccaaa tgtcgtgtgg tatttgatgg atccggtaag gatatcaccg gccattctct      2460
     caacgatcgc ttacacatcg gcccgccgat tcaacgagat ctcttcggag tttgtttgag      2520
     attccgacaa tatcgatatg tggtttgtac ggacattgag aaaatgttcc ggggcataaa      2580
     gatagctccc gaacattctg attatcaacg gattgtttgg cgagaggagg aaaaggaccc      2640
     gcttcagcac tatcggctgc taactgtaac ttacgggcta gcaccatcac cttttctggc      2700
     agtaagagtt ctcaaacaat tggcagacga ctatcatcac cgatatccac tggcagcttc      2760
     ctcactatta acggatgcat acgttgacga tatatcaaca ggtgcggata cagaggacgg      2820
     actcataaaa ctgcagaagg aacttgtcgg gctgctggcg gaggccaaat tcaacttgcg      2880
     aaagtggagt tccaattgca aaacacttat ggattcctta ccaaaggagg attgcgcttt      2940
     ccaagcaggc accactcaat cgaacaatgt gaaaatattg ggtctacttt ggaatcccga      3000
     tacggacaca ttttctacgt ctccacgatc aattattgtc acacaattgc ccaccaagcg      3060
     gaccttacta tcagagctct ccaagatata tgatccattg ggtattgtat ccccagctac      3120
     agttatgatg aagatactct ttcaagaatg ttggctctgt tctctaagct gggatgaacc      3180
     tttgactgaa aacattgcca ggagatggag catattagca ggcgagctgt caatgttggc      3240
     acaatgtcca atccctcgat acttggccag accctcgcaa gctatcgagc tgcatggatt      3300
     tgcggatgcc tcttcacaag cagtcggagc cgttgtatac agtcgagtta caacagggat      3360
     ggaaacgatt gtcacgctaa tcgcagccaa gactcgggta gctcctatca aagctatttc      3420
     gataccgcga ctggaactca cagcagctca cctactagcg aaactactaa cgctcgtcaa      3480
     gtcgtctttg tcaatcccga ttaccggaac cttttgttgg acggactctg aggtcgttct      3540
     tcactggctg tcagccccac ctcgacgatg gaacaccttc gtatgcaacc ggacggctga      3600
     aatattgaca gagtatccca gaagctgctg gaaccatgta cgttcggagg acaacccagc      3660
     ggattgcgcg tcccgcggtc tgctcccctc cacattgcgg gatcatactc tatggtggac      3720
     aggacctacc tggttagcgg aatcgccgtc tttgtggccc actggcaaaa aagggcagaa      3780
     tcgaaagctg cctgtagagg cactttgtga agaaaaaccg gacaagcaac tcaatttctc      3840
     actggaagct actcatcagg atattctcga tggtttaagt cacaaacttt cgagttggat      3900
     tcagcttttg cgagttgtta gttacgtttt ccgcttcata agcaaagtgc gctccaaggt      3960
     gaatgcacgt cttaccaaaa actcggatct ccaaaggtca tcgcaacaag ctgtttcaca      4020
     tagcggattc ttgacaacta aggacttgca gtacgctcgg aagaaattgt taaaacacat      4080
     gcaaatcact tcatttccgt tggactacga cgctgtcaag catggtcaat gcctgcccag      4140
     aaaatcaaag ttgttgaggc tcacaccgtt tttagatgag tctggactgt tacgcatcgg      4200
     tggacgtatc gaccgatcag tattgccgtt caacgcaaaa cacccgatta tcgtatcaaa      4260
     ggaatctccg ctggcactac tcatcatacg ctattttcac aaggctaatt tacacacggg      4320
     agtagatgcc accttccacc acgttcgtca gcaattcggg attttgggag ccagaaacct      4380
     gactcgtaaa gtagttttcc gctgtaaatc ctgctttatg aaccgacgcc tgacgcagca      4440
     ccagatcttg gccgatttac cgataccacg aatccaacaa aatccttgct tcagtcacac      4500
     tggccttgac tacgctggac ccatcgctat taaggaaacg aaaggtcgct ctcctcgcat      4560
     cggcaaagct tggttcgcca tatttgtttg cctggccaca aaggcgatgt acctagaagt      4620
     cgtcagcgat ctcaccacaa aagcgttcat tgctgcgttc aaacggtttt gtgcacgtcg      4680
     gaaaaccccc accgatttgt attccgacaa tggaactacg tttcatggag caagacgaga      4740
     gctggaggag atgcggaagt tagttcaaga tcaagctaag gacgaggagt tggctgattt      4800
     tttctcgact gaaggcttga attggcattt catacccccc tctgcgcccc actttggcgg      4860
     attgtgggaa tcgggagtgc ggtcggtaaa gctgcaccta cgccgagttg tgggagcagc      4920
     cgccctaacc tttgaagaat tgtcaacagt gctcgcacaa atcgaagcta ttctcaactc      4980
     gcgaccactg gcccaggtca gcgatcacac tgtcgatcca cttacgccag ctcatttttt      5040
     gattggccag ccatatacag cggtacctga gccttcttta ctggacacgc agatgaatcg      5100
     attggatcgg tggaatcaac ttcaagccat ggtacaggga ttttggaagc gatggcacac      5160
     cgaatacttg acttctctac agtcacgcgg caagtggcaa gaagggacga ctaatttaga      5220
     agtaggcact cttgttgtac tcaaggagcc caacctacca ccggcgaaat ggatacttgg      5280
     tcgcatccag gaagtacacc caggacagga ctcaaaggtc agagtggtca ccgtcaagac      5340
     agcacataca acctacaaac gccctatcac caagatcgca gtacttcccc ttacctgaac      5400
     gcgtcgttca ggggagccgg ta                                               5422
//
ID   BEL-37_DTa-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-279
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5662-5662 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 279 BP; 91 A; 54 C; 45 G; 89 T; 0 other;
     tgtttaagaa ttaatgcagt aattgcaaac tttgttgttt ttatttccat ccgatatttc        60
     ccgctaagga atagggaata cctgtaatgc tttgtatcga tatatcgtaa gttaagtagg       120
     cgataactat gtatctctac tgctcatccc taagaacaca cacacatact ttgaaaccat       180
     tgaaatacac acgtgaggtt aagcgccgaa actttggagg ttttaccagt ccaaataaaa       240
     agattaaata cagtccactc tttgtcttat tcgcaaaca                              279
//
ID   BEL-37_SpEx-I repbase;    DNA;    INV; 6263 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6263
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6915-6915 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           609..5876
FT                 /product="BEL-37_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MKFILNCLLLVKLEYFIRILVIIVNKMEGLVNLLKEV
FT                 QNVIQRGLTNFKKSPKDRLSFDYIQTRRDLLERDWNLFVSNYTKLHEKYET
FT                 QGNKMLSELYDSTEDTYITYTCLIKSMLAKYDAPKTSIPEPGTSGSSNNSS
FT                 TNSFVKLPKISIPKFSGKYSEWTTFRDLFVSLVHNNNNLDNVQKMHYLKGH
FT                 LSGEAEQLVRQTPVSDANYSQCWAQLEKRYSNKKYLVNCILKRLFGFKRMH
FT                 VESASSLKELLDTTNDCLNGLKNLKIDVTTWDAIIIHIVTFKLDSETRKQW
FT                 ELSLSNHDSNELPTYEEFATFLENRFRALEFIEPKRNSQNQANHSHVAKSM
FT                 VVSSSNIRCEYCNESHKLCFCKRFAKEPLEERRMFVAKNNICFNCLGGNHT
FT                 VLNCKKPTTCKLCHKRHHSLLHPNLSGANKSDTASKPADVEDSPSTSSVPV
FT                 VSCISTNTVPVPGQVLLATALVKAESKTDNYQVVRALLDQGSQACFVTEDT
FT                 VQLLKLKKIPIRGMVSGLGQKSTIAKYMVNITIQSMVDSNFKLNLNAYVIS
FT                 KITAYLPDQALNKNAFNWLDITNLQLADPQFNQPSKIDILLGADVYGCIIK
FT                 TGMIKSPTTSLIAQNTTLGWILSGVVNNSSNKDSSSYTQPCVSVAHAQFNL
FT                 DQILKQFWEIEDQISTKKVLSPEEQLCEEFYKATTKRRADGRYEVRLPFRV
FT                 QDPQCTAGDSRAIAESRLKSLEKRLAKNTDLKEKYSDVIEEYLRLGHLRPV
FT                 NQDDNKREIAVYLPHHAVVREDKTTTKVRVVFNASQKNNKGVSLNDTLMIG
FT                 PTLQADLRHTIMRWRTHSIGLVADIIKMYRQIRVADEDAMFQRILWRSNPN
FT                 EPIKDYELVTVTFGTASAPYQAVRTLHQIAYDEGDDYPLVAEKVLRCYYMD
FT                 DLMTGCDDVTTGIEIYQQMKGLLAKGGFELQKWNTNNKELLDQINAREQKV
FT                 ENKEENENRGKDQKELEMKSDNTMKILGLTWDRNEDSFQYTVHLPPLQNTP
FT                 ATKRTVISDIARLFDPLGWLAPTIVVAKIFIQKLWLAGLGWDEPLTKELTE
FT                 EWRTYREELILLTEVHIPRWLGKTVESDVELHGFCDASKVAYSAVVYMRLT
FT                 NNVGEVKVSLLTAKTRVAPIKQVSIPRLELCGAVLLSQLLMKTAEVLDIPK
FT                 DKVKGWTDSTVVLAWINSHPSKWKTFVANRTSEILTTMTASQWFHVSTKDN
FT                 PADAASRGLSPSLFRQNTMWFSGPQFLKEKKITYIRPNNLEINLEQSIKTH
FT                 VGVIISDDFDLLERFSSLSKLLRVVAYCRRFLNRDTRSKLYLQNKEIHEAL
FT                 QCCIKIVQKKEFSTEYKQLHDKSDLPLKGILKSLCPYLDNKGIMRVQGRID
FT                 KAPLDEQVKHPIILPKKSHFTLLLIADAHCKTLHGGPQLMINYLRTAYWII
FT                 GLRELVKQHVRKCIVCAKQRATIRNQMMGSLPSIRCTPARPFLHSGVDYAG
FT                 PINIRTTKGRGHKSYKGYICLFVCMSTRALHLEVVSDMTTQAFLAAFRRFV
FT                 SRRGHCSKLWSDNGTTFVGASRELQQILNLQSSIAESLEANGTEWHFIPPH
FT                 APNFGGLWEAGVKSTKYHIKRVLGESTLTYEELSTFLTQVEACLNSRPISI
FT                 IHLDDPGEPMPLTPGHFLIGEPLINVPDCNYENVSVGSLTRWQFVQRMLQS
FT                 FWKRWSTEYLSTLMNRYKWSLIVPEPNIGDVVLIKEDDLPPSRWMLGRVVQ
FT                 KHPGDDKVTRVVTLKTKTSTIKRPTSKLCILPVTDQ"
XX
SQ   Sequence 6263 BP; 2059 A; 1125 C; 1270 G; 1805 T; 4 other;
     ttggtccgtt cgagccggat atttttttta agaacaaaac gaagtggccc gttgggttca        60
     cttcccgtac tcgcagtgga ttgctgcggc aaaggtacgg actccttgca gcaagatcat       120
     cagccgagct atttggagaa gcgcaaagtc gacaacactc aggacaactg gcaacacttg       180
     aagattccga cgtttcgagt gaggacaaca ttggcagtac agacggcgcc actagcagct       240
     tgtgctagtg acatcatcag ttcaaccaag aatcgtcgta tgtatataag tgaagtgcaa       300
     ctgtaagtac tcttttcatt gttaatagtg caagtgaaat ttcaagcaat tttggactct       360
     attccaaagg aatttctaac ttagaatatt ttatcgaatt gtgatctcgg aagcaagaag       420
     acttagtttt attttaattt agtttatctt agagtaatta gtacatctta gacttagaat       480
     aattttatga aaaacggggg aacggggaac ctatgcccga tttctgtccc agtaaataaa       540
     gttcaaacac ttgtaaaatt tttagaaaat tttacactta ggtcacataa aaaaagagtc       600
     aagagtttat gaaatttatt ttaaattgtt tgctgttagt gaaattagaa tattttatta       660
     gaattcttgt tattatagtc aataaaatgg aaggtttagt taatctttta aaggaagttc       720
     aaaacgtaat tcaacgaggc ttgactaatt ttaaaaagtc gcctaaagat aggttatctt       780
     tcgattacat tcaaactagg cgagatttat tagaacggga ttggaattta tttgtatcca       840
     attatactaa actgcatgaa aaatatgaaa cacaggggaa taaaatgctt tcggaattat       900
     atgatagtac agaagacaca tatattacct atacatgttt gataaagtcc atgcttgcta       960
     aatatgatgc tccaaagaca tctattcctg aacctggtac ttctggtagc tctaataact      1020
     caagtacaaa ctcttttgta aaactaccaa aaatatcaat tccaaaattt agtggcaaat      1080
     actcagagtg gacaactttt cgagacttat ttgtgtcact cgtgcataat aataataatt      1140
     tggacaacgt tcaaaaaatg cactacttaa aaggtcatct tagtggtgaa gctgaacagc      1200
     ttgttagaca aacaccggtg tccgatgcaa attatagcca gtgttgggca caattagaga      1260
     aaagatacag caataaaaag tatttagtca actgtatttt gaaacgtctt ttcgggttta      1320
     aacgtatgca tgtcgagtca gcgagttctc taaaggaatt gctagacaca actaacgact      1380
     gtcttaatgg tttgaaaaat ctaaagatag atgtgacaac ttgggatgcc attatcattc      1440
     atatagttac tttcaaacta gattcagaaa cgcgtaaaca atgggaatta agcctaagta      1500
     atcacgattc caatgaattg ccaacttatg aggaatttgc tacgttctta gagaatcgat      1560
     tccgcgctct tgaattcatc gagcctaaga gaaatagtca aaatcaggcc aatcattctc      1620
     atgtcgctaa gtctatggta gtgagttcaa gcaacatacg ttgtgagtat tgtaatgagt      1680
     ctcataagct ctgcttttgc aaaagatttg caaaggaacc cttggaggaa agacgtatgt      1740
     ttgtagcgaa aaacaacatt tgttttaatt gtttaggagg caatcacacg gtattaaact      1800
     gtaagaagcc aacaacttgc aaactttgcc ataagcgtca tcattctttg ctgcacccaa      1860
     atctgagcgg tgctaataag agtgatacag catcaaaacc tgctgacgtt gaagatagtc      1920
     cttcgactag ttcagttcca gtagtctctt gcatatctac caacacagtt cctgttcctg      1980
     ggcaagtttt attagccact gctctagtaa aagctgagtc caagacggat aactatcagg      2040
     tagtaagagc tttattggat cagggttcac aggcttgttt tgtgaccgag gacacagtgc      2100
     agttgttgaa gcttaagaaa atccccatac gtggaatggt gtcaggctta ggtcaaaagt      2160
     caactatagc aaaatatatg gtaaatatca ctattcaatc catggtagat tcmaacttta      2220
     agcttaactt aaatgcttac gtcatcagta aaataacggc atacttacca gatcaagcat      2280
     taaataaaaa tgctttcaat tggctcgata tcaccaactt acagttggcc gatccacagt      2340
     ttaatcaacc tagtaaaatc gatattttac taggcgcaga tgtgtatggt tgcataataa      2400
     aaacaggcat gatcaaaagt ccaactactt ctttaattgc tcagaacacc acattaggat      2460
     ggattctgtc tggagtagta aataatagtt caaataaaga tagttcaagt tacacacaac      2520
     catgcgttag tgtagctcac gctcagttca atttagatca aattctcaaa cagttttggg      2580
     aaattgaaga tcaaattagt acaaaaaagg ttttatcgcc agaagaacaa ctttgtgaag      2640
     aattctacaa ggctactact aaaagaagag cagacggtag gtacgaagtc cggttaccat      2700
     ttcgagttca ggatccacag tgcacagcgg gtgattctcg cgccatagct gaaagcaggt      2760
     taaaatcatt agagaaaagg ttagcgaaga acactgattt gaaggaaaaa tactctgatg      2820
     taatagaaga atacttacgt ttaggacacc tgcgacctgt aaatcaagat gacaataaaa      2880
     gggaaatagc cgtgtactta ccacatcacg ccgtcgtaag agaagataaa accacwacta      2940
     aggttcgagt tgtgttcaat gcgtcccaaa agaacaataa aggagtatct ttaaatgata      3000
     ctttgatgat tggcccaaca ttacaagcgg atttgaggca cacaattatg aggtggagaa      3060
     ctcactctat tggactggta gcagatataa tcaagatgta tcgtcaaata agagtggctg      3120
     atgaggatgc tatgtttcaa aggatwctct ggcggagcaa tcctaacgag ccgatcaaag      3180
     actacgaact cgtaacagtt acctttggaa cagcgtcggc accttatcag gcggttagaa      3240
     ctctccatca gattgcttac gacgaaggcg acgattaccc tctcgtggcc gagaaagtat      3300
     tgagatgcta ctatatggac gatttaatga ccggatgtga tgacgtcact accggaatcg      3360
     aaatatacca gcaaatgaaa ggtcttttag caaagggagg tttcgagctt caaaagtgga      3420
     acactaacaa taaagagtta ttagatcaaa ttaatgcaag agaacaaaag gtagagaaca      3480
     aagaagaaaa tgagaataga gggaaagatc aaaaagaatt agaaatgaaa tcagataata      3540
     cgatgaagat tttaggactt acctgggatc gcaatgaaga ttcctttcag tacaccgtcc      3600
     atctcccgcc gcttcagaat acacctgcaa ctaaaagaac tgtaatttca gatatagcta      3660
     gattattcga cccgttgggt tggctagcgc caacaatagt tgtagctaaa atctttattc      3720
     agaaattatg gcttgcgggg ctcggttggg atgaaccact tacgaaggaa ttaacagaag      3780
     aatggcgtac ttaccgcgaa gaactgattt tactgaccga agttcatatt cctcgttggt      3840
     tgggcaaaac cgtagaatcc gatgtagagc tccatggatt ttgtgacgcg tcaaaagtag      3900
     catattccgc tgtagtatac atgcgactta ctaataacgt aggagaggtc aaggtgtcat      3960
     tgttgactgc aaagactcgt gtggcaccta taaaacaagt tagtattccc cgtctggaat      4020
     tatgtggggc agtcctattg tcacaactgt tgatgaaaac tgctgaggta ttggatatac      4080
     ccaaagataa agttaaaggg tggacagact ctactgtggt gttagcttgg atcaacagtc      4140
     accccagtaa gtggaaaacc tttgtagcca ataggacatc cgaaatctta accacaatga      4200
     cggcttcaca atggttccac gtgtcgacaa aggataatcc agcggatgct gcttcgcgag      4260
     gattgtcacc aagtttgttt aggcaaaata caatgtggtt ttcaggacca cagtttctga      4320
     aagaaaagaa aattacttat atcagaccaa ataatttaga gatcaattta gaacagtcga      4380
     ttaagactca cgtaggagtt attatatcag atgattttga cttacttgag agattttctt      4440
     cattatcaaa attattgagg gtcgtcgcat attgtcgtcg attcctaaac agagacacca      4500
     gaagtaaact ttacctgcaa aataaagaaa tacatgaagc attacaatgt tgtataaaga      4560
     tagtacaaaa gaaagagttt tcaacagaat acaaacaatt acatgataaa tcagacttac      4620
     ctttgaaagg tatactcaaa tccttatgtc cttaccttga taataagggc attatgagag      4680
     ttcagggacg aatagataaa gcaccactag atgagcaggt aaagcatccc ataattttgc      4740
     ccaagaagtc acactttaca ctacttttaa ttgcggacgc tcattgtaag actctacatg      4800
     gaggtccaca attaatgatt aattatctgc gaaccgctta ttggatcatt ggtttaagag      4860
     agctcgtgaa gcaacacgtt cgtaagtgca tcgtgtgtgc caagcaaaga gcaactattc      4920
     gtaaccaaat gatgggttcg cttccatcta ttcgctgcac tccagcaaga ccgttcctgc      4980
     acagtggcgt tgattacgct ggtcccataa atatcagaac cactaaaggt agggggcata      5040
     aatcgtataa agggtacatt tgtttgtttg tgtgtatgtc tacacgcgca cttcatctcg      5100
     aagtagtcag tgacatgacc acacaggcat tcttggctgc ttttagacga tttgtgtctc      5160
     gacgaggtca ctgttcaaag ttgtggagcg ataacggtac cacgttcgtt ggtgcttcta      5220
     gggaactgca gcaaatttta aatttacaat cctcaatcgc agaaagttta gaagcaaatg      5280
     gcactgaatg gcactttatt ccccctcatg cacccaactt tggcggtctt tgggaagcgg      5340
     gagtgaagtc cacgaaatac catattaagc gcgtattagg tgaatctact ctcacatacg      5400
     aagaactcag tacatttctt actcaggtcg aggcttgctt gaattcacgg cctattagca      5460
     ttattcattt agacgatcca ggagaaccaa tgcctttgac tccagggcat tttttaatcg      5520
     gagaaccgtt aattaatgta ccggattgca attatgagaa tgtctcagta ggttctctaa      5580
     caaggtggca attcgtgcag cgaatgctgc aatcattttg gaagcggtgg tctactgaat      5640
     atttaagcac tttaatgaac aggtataaat ggtcactcat tgttcctgaa ccaaatatcg      5700
     gagacgtcgt tctaattaag gaggacgatc ttcctcccag tcgttggatg ctaggacgtg      5760
     tagtacaaaa acatccagga gatgataagg tcactcgtgt tgtcacatta aaaaccaaaa      5820
     cgagcactat caagagacca actagcaaac tgtgcatatt gccagtaaca gatcaatagt      5880
     gtatattttt ataattacat gcttttactc atctccactc atgtgttata aacattgttt      5940
     gtattagttc taaggtttat tttaagtaca taattatata gttttattga agattgtact      6000
     cactgtattt actagttttg ttagttattt aagttcactg ttatgtttac aaagttcatt      6060
     tatactcttg ttaagaatgg ttaagtttta tgttatgtta agaacaacgg ttgtgatttt      6120
     atccgttaat taattgtatt ttgactaaac atgtgcamaa ttttattatg aaaaaaattg      6180
     tattacttat ttacttttat tataagttca aggacaaatg taaagaagga cattccgcca      6240
     ctaaatgtcc ttggtgggcg gta                                              6263
//
ID   BEL-37_SpEx-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-37_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-361
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6944-6944 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 361 BP; 118 A; 53 C; 59 G; 130 T; 1 other;
     tgttcaagag catcagatat gtaataatat gtacatktag tatgtttagt tcaaaggata        60
     ttttattgta acgagttgtc tcatagctcg atagatggcg ttgcccgatt taaattcaag       120
     ctatggtttc gttacatcga atactataag agtgtaattt attttgttat tagggttcga       180
     attcatagtt cagaatcata gttcagaatc acagttcatt catagtacaa attagttcag       240
     agttattcca tagttcatac tcagttcaaa tatacgaacc agcagttcaa gcgtaataag       300
     tggtttaatt tcaaccttat tataagctac attagatcat caattacttc ggtaattaac       360
     a                                                                       361
//
ID   BEL-38_AA-I repbase;    DNA;    INV; 6769 BP.
XX
AC   supercont1.26;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_AA_;
KW   BEL-38_AA-LTR; BEL-38_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6769
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.26; Positions 1265005 1258237.
XX
CC   Positions [5727-6305] - Integrase core
CC   'TTATA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1374..6677
FT                 /product="BEL-38_AA-I_1p"
FT                 /translation="MAPPQRKKPPTLKLLMVQLRNIQTSLDDIWRFVNDYQ
FT                 PTTTANQVNVRLQKLDELWERYGETLVEVQTHDDFEDEDETFEKARIVYSD
FT                 RYYHCKAFLMDRAKELEDPDEVEHSMRGNETLGYGHSLDHVRLPQIKLQVF
FT                 NGDIDEWISFRDLFCSLIHRKTDLPEVEKFHYLKGCLQGEPKGLIDSLKIT
FT                 RTNYQIAWDMLLKRYDNSKQLKKRQVQALFNLPSLSKESVADLHTLIDGFE
FT                 KVVQNLDQVIEPEDYKDLLLVTLLTIRLDPVTRRSWEEYSSTKDQDTLADL
FT                 SDFLHRRIRILEALPTKVADTRSSQPQPFRQKSSAVKASYGSVQSSGGRCV
FT                 VCKEDHQLYQCSSFQRLSVRERDEVLRSNSLCRNCFRSGHLARDCSSKYFC
FT                 RNCKGRHHTMVCFKQNKASSANFTTAVGNNNPPPQTESDEPSPSTSSQVVN
FT                 MVATESTVSGTTQQFSSKVLLATAVVIVEDDEGSRFPARALLDSGSESNFI
FT                 AERLSQRLRTHRERVDVSVFGIGHAATKVKHQVSAMVRSRVTAFSQNMSFL
FT                 VLPKVAMDLPTAKVNTQGWTVPDGINLADPTFFNPGSVDMVLGIEHFFDFF
FT                 GSGRRIPLGDQLPALNDSVFGWVVCGGLTNPTKSLRINCSTAATQGLEELV
FT                 ARFWASEEVGVSRLLSLEERKCEESFRKSVRRESDGRYTVSLPKDEGAISK
FT                 LGESRDIAFRRLQGTERRLARDAGLCEQYHEFMAEYIKLGHMTKAEETADD
FT                 LKRCYLPHHPVIKEASITTKVRVVFDASCKTSSGVSLNDTLLVGPIVQEDL
FT                 RSIMLRSRVRQIMLVADVEKMFRQIFITQVDRPLQCILWRFNPVDKVDVYE
FT                 LDTVTYWTKPAPFLATRTLNQLSIDEGEHFPMAAKAIKEDTYMDDVITGAD
FT                 TEEAAQKLCKQLIEMTSKGGFKLRKWVSNIPEVLDSVSEDCLAIRVSEGIN
FT                 LDPDPTVKTLGLTWMPITDQLRFQFSIPNWNSTHQPTKRQVLSVIASLFDP
FT                 LGLLGAAITTAKIIMQLLWRIRNEAGEALDWDQTLPQTVGEMWRKYYEELH
FT                 LFNNIRIERCVMIPEAVLVELHCFSDASNKAFGGCIYIRSHDSEGRLLVRL
FT                 LSSKSKVAPLKTQSIPRLELCGALLTAQLYEKVRDSIRVPVECYFWTDSTC
FT                 VLRWIQAPSNVWNTFVANRVAKIQEIAEYSQWHHVSGKQNPADLISRGISP
FT                 KDIVDNSFWWEGPDWLKESQDRWPVCSENLNVEEEEHERRRVAVCTVSANM
FT                 EFNEWYMEKFASYSDLIRKTAIWLRFMEYLRTESHSRVPLRFISTEELRKA
FT                 EFTIVRRVQQETFADEWKALSKGEAVSRKSPLRWFNPYISNDLVIRIGGRL
FT                 EHSMEQDDAKHPMVLPARHRLTRMILEHYHLQLLHAGPQLLLGVVRLKFWP
FT                 LGGRSVARNVVHQCLKCWRAKPSPAQQLMGELPAPRVTVSRPFSQTGVDYF
FT                 GPFYVRPAPRRPVVKAYAAVFICLCTKAVHLELVSDLSTDRFLQALHRFTS
FT                 RRGRCRDLYSDNGTNFVGAKNKMQDFLKLLWNSEHQERITKDCTEQGIQWH
FT                 FNPPSAPHFGGLWEAAVRSAKNLLNKVVGETPLSPEDFNTLLIQVEGCLNS
FT                 RPLTPMSDDPTDLEPLTPGHFLVGSSIQSIPEPNLEGIRLNRLSQYQLIQR
FT                 MLQDFWRRWRREYLCQLQGRSKRWKPAINVEIGKLVVVRDDNLPPMKWRMG
FT                 RIIQLHPGDDGVVRVVTLKTVAGSMKRPVEKLCFLPIPDEDSSRKSHE"
XX
SQ   Sequence 6769 BP; 1806 A; 1461 C; 1722 G; 1780 T; 0 other;
     tttttggtcc ttcgagccgg atggtggacc ccgatgagga cttggtcagg acgatatcgg        60
     ctggaaagga aacaatagcc tggggcaggc ttggtttggc gccatcgtgg ataggaaaac       120
     tcgccatagc tgcgagtgaa taattgccat cagcacaacc tttgacaccg cgccatcgcg       180
     acactgcacc acaaaggaca taaaggagga taaaaggatc ttcttccatc ggcttggctt       240
     cgtttgggca tccatcgctt ggattgtttc cacagattgg ttggactgcc cgcactttga       300
     ggattttgga ttggattcac atacgatacg atttgatgga ctggatttgg agcatctatt       360
     ggaccgaagg atcgtttgaa ggctcggact actgatccag taccggattt acttctccag       420
     gtaaatatac ctttgatcag tatatgtcca gcctttgcta gcgtatatgt gatactaatg       480
     cccattttcg acgtgtttcc ttgttcaacc tactatcaac cgagccggag ggaattgcat       540
     gttatccata ccgacgatac gaagctggat ccgatagacc gcaggtcagg tcaggcgtta       600
     ttcaaccgct agaagcaact ggttcgagct tggccattcg tgaagggatt cggaggacgg       660
     caagaagagg tggcatcaat ttatattttg tatggtgagt gctaagaatg tatatgtctc       720
     cgaagcggga cttcagataa tacacatttt taaatgaaaa tttgaatcct cttcacatca       780
     tttgccacgc aatccctgag caaaactgtt cgttatcaga acaatcgact cactctgctg       840
     gaattttgca cgcttcggaa ttcttctgat cgatttggat ttggattggt gccgttgcta       900
     gttccacggg ttagtttgaa cagtatatgt tctgccgaag cttctctttg aatactacat       960
     gagtttctcc ctcttctgtg gatccctctg tgaaaaatca tttgcaaacg agctgactgt      1020
     gtggtttttg gctttgatga taggacgagc tttggaatac aattagttgc agctgtttgt      1080
     tctcacaggt gagctacaac agtatatgtc cgccgaagtc aaaatttgga tactacagct      1140
     ggttttttac ccctctcctc ccacattcaa acggatacga gtcggaatgc agtaaacgtt      1200
     gtatgacgtc atatcagtgg ttcctcaact gtggataagt gtagttgatc gtagcacatc      1260
     cttctgttgc gtcaggtagg cttcaacagt atatgtccgc cgaagccttg gactttcgga      1320
     tcactacact atccaattcg tatatttacc ggttcgagtg acgtaaacgc accatggcac      1380
     caccccaaag aaagaagccg cctaccctca agctgttgat ggtccagctt aggaatattc      1440
     aaacatcctt ggacgacatc tggagatttg tgaatgatta ccagccgact actactgcaa      1500
     accaggtgaa cgttcgtttg caaaagcttg atgagttgtg ggagagatat ggcgagaccc      1560
     tggtagaagt tcagactcat gacgattttg aggatgagga tgaaacattc gaaaaggcta      1620
     ggatagttta cagtgatagg tactaccatt gtaaggcttt tttgatggat agggccaagg      1680
     aactggagga tccagatgag gttgaacatt cgatgcgagg aaatgagacg ttaggatatg      1740
     gccattccct tgaccacgta cggttgcccc aaatcaagct ccaggttttc aacggggaca      1800
     ttgatgaatg gatcagcttt cgcgatctgt tttgttcact catccatcga aagacggatt      1860
     taccggaggt ggagaagttc cactacctta agggatgtct tcaaggggaa ccaaagggcc      1920
     tgattgattc cttgaagata accagaacga actatcaaat tgcgtgggac atgctgttaa      1980
     aacggtatga caacagcaag caattgaaaa agcgacaggt gcaagctttg ttcaatttgc      2040
     catcgttatc caaggaatcg gtagcggatc tgcatactct tatcgatggt ttcgaaaagg      2100
     tcgttcaaaa tttggatcag gtgatcgaac cggaggatta caaggacctt ttgttagtca      2160
     ccttgcttac aatacggttg gatccggtaa ctcgccgaag ctgggaggaa tattcctcaa      2220
     ctaaggatca agatacgttg gcagatctct cggatttcct ccaccgcaga atccgaatct      2280
     tagaagcact accaacgaag gttgcggaca ccaggagttc tcagccacaa ccgttcaggc      2340
     agaagtcgtc tgctgtgaag gccagctacg gttctgtaca gtcgtctggg gggcgatgtg      2400
     tggtgtgtaa ggaggatcat caactctacc agtgttcttc cttccaacgg ttgtcagtgc      2460
     gagagagaga tgaggtgctg aggtcaaact cgctatgtag aaactgcttc agatcgggac      2520
     atctagcgag ggattgttcg tcgaagtatt tctgtcgcaa ttgtaagggt cgacatcaca      2580
     caatggtatg cttcaagcag aataaggcta gttcggcgaa ctttactact gctgttggga      2640
     acaataaccc tcctccacaa acagaatcgg atgaaccatc tccttctaca tcctcccagg      2700
     tggtcaacat ggtagccacc gaatcaacag tctctggtac tactcaacag ttctcttcta      2760
     aggtgttatt ggctactgcg gtcgttatcg tggaagatga cgagggtagt cgatttccgg      2820
     ctcgtgcttt gttggattcc ggttccgaaa gcaattttat cgcagaacgg ttgagtcaac      2880
     gtctcaggac acaccgagaa agggtagatg tatcggtatt tggtattggt catgcagcaa      2940
     cgaaggtgaa gcatcaggtt tcggcaatgg tacgttcgcg agttacggct ttctcgcaaa      3000
     acatgagttt cctcgttcta ccaaaagtcg cgatggattt acctacggca aaggtgaata      3060
     ctcaaggatg gacggtgccc gatgggatca atttggcaga tcccaccttt ttcaatccag      3120
     gatcagtgga tatggtgttg ggcatcgaac acttttttga cttcttcgga tctggccgaa      3180
     gaattcccct cggagatcaa ctaccagcac taaacgactc tgtgttcggt tgggtggtat      3240
     gcggaggctt gacgaatcct actaaaagcc ttcgcatcaa ttgtagtacg gcagctacac      3300
     aaggattgga ggaactagtc gcacggttct gggctagtga agaggttggc gtttctaggc      3360
     tgctttcgct ggaggaaagg aagtgtgagg agagcttccg gaaatcggtt cgtagggaat      3420
     ccgatggtcg atacactgtt tcgttgccga aggatgaagg cgcaatttcc aagttgggcg      3480
     agtcacggga catcgcattc cggcgacttc aaggcacgga acgcagattg gcgagggatg      3540
     ctggtctgtg cgaacagtat catgagttca tggcagagta tatcaaactg ggacacatga      3600
     cgaaagcaga agaaacggcc gatgatttga aacggtgcta cttgccccat catccggtca      3660
     ttaaggaagc gagtataacc accaaggtcc gcgtggtatt cgatgcgtcg tgcaagacgt      3720
     cgtccggcgt ttcgctaaac gatactctgc tggtgggacc gattgtgcag gaggacttgc      3780
     gatcgattat gcttcggagt cgcgtaaggc aaatcatgct ggtagccgat gtggaaaaga      3840
     tgtttcggca aattttcatc actcaagtgg acagaccgct gcaatgtatt ctgtggcgtt      3900
     tcaatccggt agacaaggtg gacgtatatg aactggatac tgtcacgtac tggacgaagc      3960
     ccgcaccgtt tctggcaacg cgtacgttaa atcaactctc gattgatgaa ggagaacatt      4020
     ttccaatggc tgctaaggcg atcaaggagg atacatatat ggatgatgtt atcacaggag      4080
     cggatacgga ggaagctgca caaaaactat gcaagcaact catcgagatg acatcaaagg      4140
     gaggcttcaa actccggaaa tgggtgtcaa atattccgga agtattggat agcgtttctg      4200
     aggactgtct agcgattcga gtatcggaag ggatcaatct cgaccctgat ccaactgtaa      4260
     aaactctggg cttaacatgg atgccaatca ctgatcagct aaggtttcag ttctctatcc      4320
     cgaattggaa ttcaacccac cagccaacaa aacggcaagt tctgtcggta atcgccagtt      4380
     tattcgatcc tttaggacta ctaggcgctg caataactac agccaagatc attatgcagc      4440
     ttttgtggag gatccggaac gaagctggtg aagcattgga ctgggaccaa acactacctc      4500
     agacggtggg tgagatgtgg agaaaatatt acgaagagct gcatctgttc aacaatattc      4560
     gtatcgaacg atgtgtcatg atcccggaag cagttttggt tgagcttcat tgcttttctg      4620
     acgcttcaaa taaggcattc ggtggatgta tctacatacg tagtcatgat tcggaaggga      4680
     gacttctagt tcggctgttg tcctccaaat ctaaggtggc gccgcttaag acgcagtcaa      4740
     ttcccaggtt ggagctgtgc ggggctttac tgacggcgca gctatatgag aaggttcgag      4800
     attccattag agttcccgtt gagtgttatt tctggactga ttcgacgtgc gttctacgat      4860
     ggatacaagc cccttcaaac gtttggaaca cttttgtggc gaaccgggtc gccaaaatcc      4920
     aagaaattgc ggaatattcg caatggcatc atgtatcagg caaacaaaat ccggcggacc      4980
     tgatctccag aggaatttct ccaaaggaca tcgttgataa ctccttctgg tgggaaggac      5040
     cagactggtt gaaggaaagt caagatcgtt ggcccgtatg ttctgaaaat ttaaatgtag      5100
     aggaagaaga gcatgagaga cgacgagtgg ctgtatgcac ggtgtcggcc aacatggaat      5160
     ttaacgagtg gtacatggaa aagttcgctt cgtattctga tctcatacga aaaacagcaa      5220
     tttggttgcg gttcatggaa tatctgcgaa ctgagtccca tagcagagta cctttaaggt      5280
     ttatatcaac ggaagaactt aggaaggcag agttcactat tgttcgtcgt gtccaacagg      5340
     agactttcgc ggatgaatgg aaggcacttt ctaagggaga agcggtgtct agaaaatctc      5400
     cacttcgatg gtttaaccct tatatttcca acgatttggt tattcgcatt ggaggacgtc      5460
     tagaacattc catggaacaa gatgacgcaa aacatccgat ggttcttcct gcaaggcata      5520
     ggcttactcg tatgatcttg gagcactatc acctacagct tttacacgca ggaccacaat      5580
     tgctgcttgg agttgttcgt cttaaatttt ggccgttggg cggacgaagc gttgctagaa      5640
     acgtcgtcca tcaatgttta aaatgttggc gtgcaaaacc ctcaccagca cagcagctca      5700
     tgggagagct accagcaccg agagtcaccg tgtcaaggcc attttcgcag actggcgtcg      5760
     actatttcgg accattttat gtaagaccag ctccaagacg acccgtggtg aaggcgtacg      5820
     cggccgtttt tatctgcctt tgtacaaaag cagtacactt agaattggtc tccgatctga      5880
     gtactgatcg gttcctgcaa gccctccatc gtttcacttc aagaagagga aggtgtcgag      5940
     acctctattc cgacaacgga acaaatttcg ttggagccaa gaataaaatg caggattttt      6000
     taaaactgtt gtggaattca gagcatcaag aacggattac caaagattgc actgaacagg      6060
     gaatccaatg gcatttcaat ccgcccagcg ctccacattt cggaggactg tgggaagccg      6120
     ctgtccggtc agccaagaat cttttgaaca aggtcgttgg agaaacacca ctctcgcctg      6180
     aagacttcaa tactcttctt atacaagttg agggatgtct taactcgaga ccgctaaccc      6240
     caatgtccga cgaccccaca gatttagaac cgttgacgcc tggacatttt ctagttggct      6300
     cttctatcca atctattcct gaaccaaatc tggaaggtat acggttgaac cgtttgagcc      6360
     aatatcagtt gatccagcga atgttgcagg atttttggag aagatggcgt agagagtatc      6420
     tttgccaatt acagggtaga agcaaacgtt ggaaaccagc tatcaatgta gaaattggca      6480
     aattggttgt tgtgcgagat gataatctac caccaatgaa gtggagaatg ggtcgaatca      6540
     ttcagctgca tcccggagat gatggagtag tacgagtcgt aacattaaaa accgttgcag      6600
     gatcgatgaa gcggcccgtt gaaaagctct gttttctgcc aataccggat gaagattcgt      6660
     ccaggaaatc acacgaatag tcagcatact atccccttcc ttccttcctt tcccttcaga      6720
     agaggattct tttcttttca gaaagttagc atttctgggt gggtgagga                  6769
//
ID   BEL-38_AA-LTR repbase;    DNA;    INV; 695 BP.
XX
AC   supercont1.26;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_AA_;
KW   BEL-38_AA-I; BEL-38_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-695
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.26; Positions 1258236 1257542.
XX
SQ   Sequence 695 BP; 203 A; 147 C; 180 G; 165 T; 0 other;
     tgtctgggag tgacaccaaa cccaaccgat atcacccata tcgcaaaccc aaccgaccca        60
     tatagcaatg cacaaatgtg acctacattg cgagcaagaa tgcaacgaga tccattgtgc       120
     tgtgttggtc aggcagtcag tggtcgccgt gaccattgct gagaggagcc aagagcggag       180
     cgatcgcaac atgatggctc catgtatatt gctgcggcta cccgtaaggc tactgcagtg       240
     gtgaatatcg caaccggtga taagagagcg ataaggaacg atccgactct cagtgggccc       300
     gaagaaatat catcgcatcg atcgaggttg gatgatgacc atttaggata ggtagtgtta       360
     gaagtattcc aacgacccac ctatcgtgag tggaggctgc gcgcgggaat tttaatttgt       420
     tgttatgtgt taggattaag attgaatgtt agaatataag ccgaaagtta atgtaccgtg       480
     taatgtgtaa taaatgtagt gtctagtaaa tgtgttttta taaatgtcgc gtgtgttgat       540
     tgtgcctaat tggatcccga aacacccgga atactacagc aagggagttt gtagtggaag       600
     ccctcacccc taaaacctca ccatccatcg agtgttggag agccaccaac ggaacaaggc       660
     tatcgaaggc gaggaagtaa atcggttacc caaca                                  695
//
ID   BEL-38_AnFu-I repbase;    DNA;    INV; 5626 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5626
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 758-758 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..5556
FT                 /product="BEL-38_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MDPKLPPTGTPRAPRTRRVTSTLRTTRTPRTNRTPPM
FT                 VRTPRTNRTPLTARTPRTSGTPQSSRTQRTTHTSLTPPMLQMASTQRSPQI
FT                 SSEILLPLETKTPEVKVYPEVEASGHMCDLELQELIRIHGILAQNKALTSA
FT                 QCKVFRKKIEASYDVYDQHYNVLXKHVSVGERSPHEINFRKFRAIHEEAMI
FT                 ELESAEEYILESKLSKTVIPVKNPPPVVVHTPLPKPIPSFSGKYEEWQRFK
FT                 TIFQDVVDKSQESSRMKLYHLEKALCGEASKIIDERTLNEGNYERAWELLS
FT                 DRYDNKRRLINIHISGLLNLKKQHRENHEDLRLLVETVDSHIDNLKYLGEE
FT                 FNGLARSIVVFLLSQALHVDTKKLWEATISKDELPCYDKTIKFLKDRVSVL
FT                 ERCIEKNNIATSESANVKAIPQPPQKNLKPKSHALSATVSQKCELCEGAHR
FT                 NIQCPELSKLNPFQKNERIRAAGICFNCLRKGHRSKDCPSDKTCHKCNRRH
FT                 HTLLHNEGGNNVPLGFSASDDRRPMIPTEQSPPFNCSSSFANSSRTVFLLT
FT                 AVVQVYDKWNVPHPCRVLLDSGSQVNFVSEELANRLQLPMKPTNVCITGIN
FT                 AIRTLARDKIEMKIKSRISDFAVNLECLVAPKVTSIIPSSHVNIDLSSLPN
FT                 GIILADPLFYQPQRVDVLIGAELFFDILKENQLQLAPNLPVLRETQFGWVV
FT                 SGSIVEPYVTNMSLQHSYKVSVEEVEDMMQHFWQIEEVPNVPKMSKEELAC
FT                 EAHFLSTYKRDEDGRFIVRLPFKEGLLQLNNCRSVALKRFLMLEKRLVRNP
FT                 DLRAQYTDFVREYELLGHCCEINESEDHPNQAAYYLPHHAVLRPSSTSTKC
FT                 RVVFDASAKASPSDMSLNDVLQVGPVVQNDLHFIVLRFRTYKVAFSGDVSK
FT                 MYRQVLHSEEDRRFLRIFWRPHPSQPMRILQLNTVTYGTASAPFLATRCLL
FT                 QLVEEDGPAFPIASRIVKEETYMDDVLSGADSVEDAIEAQRQLKLLLERGC
FT                 FPIHKWCSNSNQFLEHIPEEDREKKTPMELRGVNETIKVLGLLWDPDADIL
FT                 FIANNPAPSSTDHHRITKREMYSEIAKFFDPLGLVSPVIVVAKLLAQRMWR
FT                 LKIGWDDPVDDAMTREWNELQDSLSHLHTIAIPRCVTFDGVMEYELHGFSD
FT                 ASTTAYGACIYLRSLFPDGSAKLQLLTSKSKLAPLHDLSIPRKELCAALLL
FT                 ARLIRKVLPALNMSFRDVVLWCDSTIVLSWIRKPLNQLQLFVRNRIAVIQE
FT                 STSDHRWEYIRSQDNPADIVSRGQLVEPLKNNNLWWYGPAFLYKSDYEVEP
FT                 AEFVSEDDLPELMPAVVTSAVSFDDISFLYKFSNFRKTQRIMGYLLRFIGN
FT                 CRSPPNLRESSPHLTVKELRRSTETMMKLIQQLHFRDEIQRVIANEHCKGL
FT                 ANLRPIYLDGLLRVGGRLDRSLLPFESRHPIIVPSKDPLIHHLIRQMHVEL
FT                 LHVGQTGLMNAMRQRYWLLNARSTIRAITRKCVRCFRVNPTNSNQLMGNLP
FT                 STRVVPSPPFAVTGVDYAGPIFIKQGGRRPILIKAYVSVYVCMATKAVHLE
FT                 PVSDLSADAFLASLKRFIGRRGMIQQLHSDNATNFRGANNELKELFNQFRD
FT                 QQFVTSVETFCHSREIQWHFIPPDAPEFGGLWEAAVKSTKTHLKRVVGNGR
FT                 LTFEELTTVLVEIEAVLNSRPLFTISNDPADPLVITPAHYLIGRPLIALAE
FT                 PSLENVKATRLTRWQHLQLMREHFWRAWSREYLNTLQPRKKNLRTTTNIRE
FT                 GMIVLLHNRNEPPLNWTMGRVTVVYPGKDGLVRAVDVSIGGSTYRRSITKI
FT                 SVLPIEDNAIQPLDL"
XX
SQ   Sequence 5626 BP; 1585 A; 1349 C; 1263 G; 1428 T; 1 other;
     taattttggt ccgtccgaac cggatagtgt agtgttgtgt gaaatatgga tcccaagctg        60
     cctccaaccg gcacaccccg tgcgccccgt acgcgccgtg taacgagtac cctgcggacg       120
     acccgtacac cccgtacaaa tcgtactcca ccgatggtcc gtacaccgcg gacaaaccgt       180
     actccgctaa cggcacgtac accgcggaca agcggcacgc cgcagtcgtc ccggacacag       240
     cggaccaccc atacgtcgct gactccaccc atgctgcaga tggcctcaac gcagcggtca       300
     ccccagattt cttcagaaat cctcctacca ttggaaacaa aaaccccaga agtgaaagtg       360
     tatccagaag tggaagccag cggccacatg tgcgacttag agttgcaaga attgattcgg       420
     attcatggaa tccttgcaca gaacaaggca ttgacgtcgg cgcagtgtaa ggtctttcgt       480
     aagaaaatag aagcgtcata tgacgtgtac gatcaacact ataacgtgtt gktgaaacat       540
     gtcagtgttg gtgagcgctc gccgcatgaa atcaatttcc gaaaattcag agccatccac       600
     gaggaagcga tgatagagtt agagagtgcg gaagaataca ttctcgaatc aaagctttca       660
     aaaacagtga ttccagtgaa gaacccacct cccgtggttg tgcatactcc gcttcctaaa       720
     ccgattccat cctttagcgg aaaatatgaa gagtggcaac ggttcaaaac catatttcaa       780
     gacgttgttg acaaatcaca ggaaagttct cgtatgaaat tatatcatct ggaaaaggca       840
     ttatgcggtg aagcgtctaa aataatcgac gaaagaacat tgaacgaagg aaattatgag       900
     cgcgcctggg agttactgag tgaccgttac gacaacaaaa ggcgtcttat aaacattcac       960
     attagtgggt tattaaactt aaagaagcaa catcgtgaaa accatgaaga cctgcgattg      1020
     ttagtggaaa cggtggatag ccacatcgat aatctaaaat atttgggtga ggaatttaac      1080
     ggactcgcgc gatcaatagt ggtgttcctc ctgtctcaag cgcttcacgt agatactaag      1140
     aaactttggg aagccactat ttccaaggat gaattgccat gctatgacaa aaccataaaa      1200
     ttcctgaaag atcgagtttc agtgcttgag agatgtatag aaaagaacaa tatagcgaca      1260
     tctgaatccg cgaacgtaaa agcaatacct caaccaccac agaaaaatct aaaaccaaaa      1320
     agccatgcgt tatcggctac cgtctctcaa aagtgtgaat tatgtgaggg tgctcatcga      1380
     aacatccagt gtcccgaact aagcaagttg aatccttttc aaaaaaatga acgtatccga      1440
     gcggcaggta tctgctttaa ctgccttcgt aaaggacacc gctctaaaga ttgcccatcg      1500
     gataaaactt gccataaatg caatcgaaga catcatacac ttctccataa tgaaggtggt      1560
     aataatgttc ctcttggttt tagtgcatcc gatgatagac gtccgatgat ccctacagaa      1620
     cagtcgccgc ccttcaattg ttcatcgagt tttgcaaact catccagaac cgtgttcctg      1680
     cttactgctg ttgtacaagt ctacgataaa tggaatgttc cacatccttg ccgtgtctta      1740
     ttggatagcg gatcacaagt gaatttcgtc tccgaagagc ttgctaatcg acttcagcta      1800
     ccaatgaagc ctacaaacgt ttgcattact ggtatcaatg caatacgcac cttggctcgt      1860
     gacaaaattg aaatgaaaat taaatctcga atctctgatt ttgcagtgaa cctggaatgt      1920
     ttggtggcac cgaaggtgac tagtataatt ccgtcttccc atgtgaacat cgacctttcg      1980
     agccttccca acggaattat tttagctgat ccattattct accaaccgca aagagtggat      2040
     gtgttgattg gtgcagagct cttttttgat atcttgaagg aaaatcagct acaacttgct      2100
     ccaaacctac cggtactgcg agagactcaa tttggatggg tagtatccgg atccattgtc      2160
     gaaccatatg tcaccaacat gtcgttgcaa cattcatata aggtatccgt agaagaagtc      2220
     gaagatatga tgcaacattt ctggcagatt gaggaagtgc ccaacgttcc taagatgtca      2280
     aaagaagagt tagcctgtga ggctcatttt ttgtctacct acaaacgaga cgaagacgga      2340
     aggttcatcg ttagattgcc gttcaaagaa ggtttgctgc aattgaacaa ctgtcgcagt      2400
     gttgcactca agcgtttctt gatgctcgaa aaacgtcttg ttcgtaatcc agatttacgg      2460
     gcgcaatata ctgactttgt tcgggaatac gaactcctgg gccactgctg tgaaatcaac      2520
     gaatccgaag accatccaaa tcaagctgct tactacctgc cgcaccatgc ggtgttacga      2580
     ccatcgagta cgagcacgaa atgcagagtc gtgttcgatg ctagcgccaa ggcttcacca      2640
     tccgatatgt ccttaaatga tgtgctacaa gttggacccg tagtccagaa cgacttacac      2700
     ttcatcgtct tgcgttttag gacatataag gtagcgtttt ccggagatgt gtctaaaatg      2760
     taccgccagg tactgcattc cgaagaagat cgccgcttct tacgcatctt ctggagacct      2820
     catccatccc aaccgatgcg aattctacaa ttgaatacgg taacctatgg caccgcatcg      2880
     gcccctttcc tggcaacaag gtgtttgttg caacttgtcg aagaagatgg cccggccttt      2940
     cctatcgctt cacggatagt caaggaagaa acgtacatgg atgatgtact ctccggtgct      3000
     gattcggtgg aagatgccat cgaagctcaa cgacaattga aactgttact agaacgagga      3060
     tgttttccaa tccataagtg gtgctcgaat tccaaccaat ttctcgagca cattcccgaa      3120
     gaagatcgcg aaaagaagac ccccatggaa ctaagaggag taaatgagac cataaaggtg      3180
     ctcggcttgc tgtgggaccc tgatgccgat attctgttca tcgctaacaa cccagcaccc      3240
     agctcaactg atcaccatcg aataacgaaa cgtgaaatgt attctgaaat cgccaaattc      3300
     ttcgacccgt tgggcttagt atcaccagtg atcgtagtag cgaagctcct agctcagcga      3360
     atgtggcgac tcaaaatcgg atgggacgat ccagttgatg atgcgatgac gcgtgaatgg      3420
     aatgaactcc aagattcgtt atcacatttg cacaccattg ctataccgag atgcgtaacg      3480
     tttgatggag ttatggaata cgagttacac ggtttttctg atgcatctac cacagcatat      3540
     ggagcatgta tctatctgcg aagcctcttc cctgatggtt ctgcgaaact acagctactt      3600
     accagcaagt ccaaacttgc acctttacat gatctgtcga taccccgaaa ggagctgtgt      3660
     gctgctctat tgctcgcccg attgataaga aaggtgttac cagctctcaa catgtccttc      3720
     cgagacgtcg tactgtggtg tgacagtaca atcgtacttt cttggataag gaaaccgctc      3780
     aaccaactgc agttattcgt acgaaatcgt attgctgtaa tccaggaaag tacaagtgat      3840
     caccgatggg agtatattcg gtcacaagac aaccctgcgg atattgtctc tcgaggccag      3900
     ctggttgaac cgctgaagaa caacaacctc tggtggtatg ggccagcctt tctctacaaa      3960
     tcggattacg aagtagaacc tgctgaattc gtttccgaag atgatttacc cgagcttatg      4020
     ccagcagtag taacatcagc cgtaagcttc gacgacattt cctttctata taaatttagt      4080
     aattttagga agactcagcg tatcatgggc tacttgttgc ggtttatagg aaattgtcga      4140
     agcccaccca acctgcgtga atccagccca catttgaccg tcaaagagct gcgtcggtca      4200
     actgaaacca tgatgaagct gatccaacaa cttcatttta gggatgaaat ccaacgagtt      4260
     attgccaatg aacattgcaa aggattagcc aatctccgtc caatatacct cgatggcctg      4320
     cttcgtgtgg gaggacgttt agatcgctct ttactgccgt ttgaaagtcg tcaccctatt      4380
     atcgttccta gtaaggatcc tttaatacat cacctgatac gacagatgca cgtcgaactg      4440
     ctacatgttg gacaaactgg attgatgaat gcaatgagac agcgatattg gttgttaaat      4500
     gcacgctcca ccatccgcgc tatcacccgt aagtgcgtga gatgttttcg tgtaaatccc      4560
     accaactcga accaactgat gggaaacctg cctagtacac gagtcgtacc gtcgccacct      4620
     tttgccgtca caggtgttga ttacgctggc ccgatattta tcaagcaagg cggacggcgt      4680
     ccgatattga taaaggccta tgtatccgtc tacgtttgta tggcaaccaa ggccgtacat      4740
     ctggaaccgg tgtccgatct gagtgctgac gctttcttgg catcgttgaa acgattcatc      4800
     ggccgacggg gaatgataca acagcttcat tcggataacg ctactaactt ccgaggagcg      4860
     aacaacgagc tgaaggagct gtttaatcaa ttccgtgacc aacagtttgt gacctccgtt      4920
     gaaacctttt gccattcgcg tgagattcag tggcacttca tcccgccaga tgcaccagaa      4980
     tttggcggtc tctgggaagc tgccgtgaag tccaccaaaa cacatcttaa gcgcgtcgtc      5040
     ggtaatggaa ggctaacctt tgaggaattg accaccgtac tagtggaaat cgaagctgtt      5100
     ttgaattccc gaccgctgtt taccatctct aacgatcctg ctgatccgct tgtgataaca      5160
     ccggcccatt accttattgg tcgtccattg attgccctag cagaaccgtc cctggagaat      5220
     gtgaaagcaa cgcgtttaac cagatggcaa catcttcaac ttatgcgcga acatttctgg      5280
     cgcgcttgga gtcgtgagta tttaaacacg ttgcagccga ggaagaagaa tctccgaacg      5340
     actacgaaca ttcgagaagg aatgatcgtc cttctccata atcggaacga gcccccattg      5400
     aactggacca tgggacgtgt tacagttgtc tatcctggca aagatggctt agtgcgagct      5460
     gtcgacgtat ccattggagg ttctacctat cgtcgcagta tcaccaaaat atccgtgctg      5520
     cctattgagg ataacgcgat ccaacccctc gacttgtgaa cagactttca tttgttaacc      5580
     ttagaatctt tttctttagt tttgagtaac ctcaaggggg ggagta                     5626
//
ID   BEL-38_AnFu-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-312
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 753-753 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 312 BP; 77 A; 74 C; 68 G; 93 T; 0 other;
     tgttccgttc cacatggcac ggaatgaatg ccatcccaca ctccgctctc tagagcatgc        60
     ccatcactat agcgtcccta tgacgtttta gagttgccgc caattttggg gcatatataa       120
     gtgagcgcaa gtgaggaagg attaccgccg ttgtttatta ccgtctgttg ttgtacgttg       180
     ttttctatgt ccgagttacc gcgaccgtct gtgttagaaa taaagaaaac cttgtatccg       240
     tgaattcaag agacaagtgt tacagtccat ttttaattcc aaagttcagc tcaccctgcc       300
     ggagtttgaa ca                                                           312
//
ID   BEL-38_CQ-I repbase;    DNA;    INV; 5693 BP.
XX
AC   AAWU01044769;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_CQ_;
KW   BEL-38_CQ-LTR; BEL-38_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5693
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 229-229 (2011).
XX
DR   Genome; AAWU01044769; Positions   15984   21676.
XX
CC   Positions [4715-5296] - Integrase core
CC   'CAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           383..5692
FT                 /product="BEL-38_CQ-I_1p"
FT                 /translation="MVLHTPMKQPVNTDEVKSLIHQRGQVKGKVTRIKSAL
FT                 DEAKKNPQRITKATLKVYEKKLEAHYQEYVLRHREVIKAVDKKEEQDDVLD
FT                 VFDQLHTETLVLVEELMEMFNQPVAGPAPFQVGANGVAPQVIVQQQPLRAP
FT                 IPTFDGQTENWPKFKAMFEDLVGRTRDSDAMKLHHLDKALVGDAAGLITAK
FT                 MIQDNNYEQVWKEISEQFENQRVIVDTHIDGLLQLKPITKGNHKDLQALTK
FT                 ACDRHVAGLQYQGLVVDRLSGLIINKLVVGCLDDSTRQQWERTQKQGELPD
FT                 FNQTLQFLKTECQVLERSQNSRVLSSAKEQSTTKPSCPKPTQKSHTATSAK
FT                 VAKSCLVCGADHRHFECSKLLAMTVPERNAKVSELKLCFNCLRAGHRLSSC
FT                 SSNLKCQTCHKKHHTLLHNDSFSKAQSVRPIPSLQVTNPTTPQSESPNLPT
FT                 STTLSQNLQQQIPLNSSCSSNHSQSLKTVMLLTALVLIENDGDPVPCRALL
FT                 DSGSQVNFLSERIADKLKAPRESLYVPIAGVGGSKMYAREKVRVTVPSRYS
FT                 AFAASIACLVVPKVTGIIPGSKIDVSSWSIPVGIQLADPEFNVPERIDMLI
FT                 GASMFFSLLKSGQLHLSDDLPELRETHFGWVFSGEIENSVNHSHIANNASL
FT                 DVLNQTISKFWEVEDLADPMPPPSDVDECEKLFVETHRRLPSGRFVVRLPF
FT                 REDVSGLPDNRSLALRRFLLLERRLNREPSLKQQYAKFIDEYETLGHCREV
FT                 DESKDVDQHRYYMPHHAVLRPTSSTTKLRVVFDASAKQGSTAKSLNEVLHV
FT                 GKPVQSDLFSILLRFRKNPIAFTADIEKMYRQVLIDSSQTRFQRILWRSDS
FT                 SKPIRVLELQTVTYGTAAAPFLSTRCLVQLCQDEREKFPLAAEVVRDDCYV
FT                 DDILSGASSADEAVVVQRQIRKMLESGGFRVHKWSSNCQEVLSSVPESDRE
FT                 KLVCLDQGNEVVKALGLTWCPQSDEFMFVVRLPKDVTEFTKRSIFSEIGRL
FT                 FDPIGFLSPVIVVAKLYMQKLWLIELPWDAKVEEDLLASWLCFRRALPKVS
FT                 EIRIPRYVISPSTVAIELHGFSDASVVAYGANIYVRCILSDGRAQLRLLCS
FT                 KSRVCSPKKDLNIHRKELMACELLARMMVRVLETVKFKVSQVVLWTDSQVV
FT                 LAWLKKSLAKLDVFVRNRVAKILELTAGFIWKYVRSKDNPADIVSRGMLPE
FT                 ALMSKSEFWEGPFFLRIEVYDEEIPPEIPDDELPELKLGPIIATPVFNEDQ
FT                 LPVFTRFSSFRKLQRVMAYVQRFIQNCRQKDPSCRVFMIHPTIPELRASLE
FT                 LIVKIIQHEALSDEIHRVQNDEPCKKIAGLHPFYQDGVLRVGGRLQQSSLL
FT                 FHSKHPYILPKHPVVDLLIRAYHEENLHVGPKSLIAALRTRFWLIDGRSSV
FT                 RRITHRCVTCFQARPKVASQLMGNLPAYRVNQALPFEVTGVDYAGPVYVKE
FT                 GRYKPKIVKAYISVFVCMVTRAVHLELVSDMSTETFLAALKRFVGRRGLPR
FT                 EIHSDNGTNFRGAKTELHELYELLKSQVTVDEIAQFCQPREINWSFIPPEA
FT                 PNFGGIWEAAVKRTKFHLKRTLKEAKLSFEEYATVLTQIEGILNSRPLYAT
FT                 SSEPNDSEILTPGHILIGRPLTAVPEPSCEGVQINRLIRWQYMQRLRDEFW
FT                 RKWHRDYLQTLQPRGKNRVKSANIKPGMIVLLEEKDAPVQVWKLGKITKTF
FT                 PGKDDLVRTVEVQIGTVVYKRAIHKIAVLPIIDNANLVKVTEIPSLPGGS"
XX
SQ   Sequence 5693 BP; 1454 A; 1369 C; 1455 G; 1415 T; 0 other;
     tggtccttcg agccggattt gtgtgaagtg ttcggaccta caaggtcctt cagaccggaa        60
     ttgtgcgaaa agtgctgacc ttcatggggt tttaacccgt tattctgtga acgttcaatg       120
     agagtcgcca accggaagta aaagtgatcc gtcaacccgg acatgtgaaa gtggccttta       180
     gcggatgcga gaaagaactg acaagtgggt ctaaagagac caaagtgaag cacagccaaa       240
     gtgttttaca aaccaaaaac tcgtgtgcca aaaaagttgg caaagtgcgt ccacgccgtg       300
     ggcaaaaagt tgcaacaagc aaaaggttgc aaaagtgaac tctaactttg agacacaagt       360
     gaagtgaagt gagagcgcca aaatggtgtt acacacgcca atgaagcagc ccgtgaatac       420
     agatgaagtg aagtcgctga ttcatcagcg gggacaggtc aagggaaaag tgacgagaat       480
     taagagtgcc cttgacgaag ccaaaaagaa cccgcagagg ataaccaagg cgacgctgaa       540
     ggtgtacgag aagaagctgg aagcgcacta ccaggagtac gtgttgcgcc atcgtgaagt       600
     gatcaaagcg gttgacaaga aggaggaaca agatgatgtg ctcgacgtgt ttgaccagct       660
     tcacaccgaa acgctggtgc tggtcgaaga gctgatggag atgttcaacc agccggtcgc       720
     tggaccggcc cccttccaag tcggtgccaa cggagtggcg cctcaagtga tcgtgcaaca       780
     gcaacctctt cgagcaccga taccgacctt cgacggacag acggagaact ggccaaagtt       840
     caaggccatg ttcgaggacc tcgtcggtcg cacccgcgat tccgacgcca tgaagctgca       900
     tcaccttgac aaagccctgg tcggtgatgc agctgggttg atcaccgcaa agatgattca       960
     agacaacaac tacgagcaag tttggaagga gatcagcgag cagttcgaga accaacgtgt      1020
     catcgtggat acgcacatcg atggattgtt gcagctcaag ccaatcacca agggaaacca      1080
     caaggacttg caggcgctca ccaaagcctg tgatcgccac gtagccggat tgcagtacca      1140
     aggactcgtc gtcgacaggt tgtcaggact tatcattaac aagctagtgg tagggtgctt      1200
     agatgatagt actagacagc agtgggaaag gacgcagaaa caaggtgagt tgccagactt      1260
     taaccaaaca ttgcaatttt tgaaaaccga gtgccaagtc cttgaacgtt cccaaaattc      1320
     gcgcgtcctg agctcagcaa aggagcaaag caccaccaag ccatcttgcc ccaaaccaac      1380
     ccaaaaatcc catactgcca catctgcaaa ggtcgccaag tcatgtctgg tttgtggggc      1440
     ggatcaccgt cactttgaat gttcgaagtt gctggcgatg acagttccgg agcgcaatgc      1500
     caaagttagt gagttgaagt tatgttttaa ctgcctccga gctggtcatc gactttctag      1560
     ttgctccagc aacctgaaat gtcagacttg ccacaagaaa caccacacct tgcttcataa      1620
     cgactctttc tccaaagctc aaagcgtaag accaatccca agcctccaag taacgaaccc      1680
     tacaacacct cagtctgaat ctcccaacct tcccacgtcc actacactga gtcagaacct      1740
     gcagcagcaa atccctctca actcttcatg ttcatccaac cattcccaga gtttgaaaac      1800
     tgtgatgttg ctgacggctc ttgtcctgat cgagaatgat ggagatcccg ttccttgccg      1860
     tgcgcttctt gatagtggtt cgcaagtgaa ctttctctcc gagcggattg ccgacaagtt      1920
     gaaggcccct cgtgagtcgc tgtacgttcc gatcgctggt gtaggtgggt caaagatgta      1980
     tgctagggag aaagtcaggg ttaccgttcc ttcgagatac tcggccttcg ccgccagtat      2040
     cgcatgtctg gtggttccaa aggtgactgg aatcatcccc ggatcgaaga ttgatgtttc      2100
     ctcctggtcg atcccagtgg gaatccaact tgcggatcca gagttcaatg tccccgagag      2160
     aattgatatg ttgattggtg cctccatgtt tttcagcctg cttaagtcag gacagctgca      2220
     cttgtcagac gatctgccag agttgcgcga aactcatttc ggctgggtat tttccggcga      2280
     aatcgagaat tctgtgaacc attcacacat cgcgaacaac gcttcgttgg atgtgctgaa      2340
     tcaaacgatt tccaagtttt gggaggtcga ggatcttgcc gatccaatgc ccccaccctc      2400
     tgatgttgat gaatgtgaga aattgttcgt ggaaacgcat cgtcgtttgc cgtcaggtcg      2460
     atttgttgtt agattaccgt ttcgtgaaga tgtttcaggg ttgccagaca accgttcgct      2520
     cgctcttcgt cggtttctgc tgttggagcg tcgtctcaac agagaaccaa gtctgaagca      2580
     gcagtatgct aagttcattg atgagtatga aacccttggt cattgtcgtg aggttgatga      2640
     gtccaaggat gtagaccagc atcggtacta catgccccac cacgccgtcc tgaggccgac      2700
     gagctcgacc acgaaactgc gagtagtgtt cgacgcgtcg gccaagcaag gttctacggc      2760
     gaagtcgctc aacgaggttc tccacgttgg aaagccggtc caaagtgatt tgttcagtat      2820
     cctcctcaga tttcgtaaaa accccattgc attcactgcc gatattgaaa aaatgtatcg      2880
     gcaagtgctt atcgactcgt ctcagacgag gttccagaga attctgtgga ggagtgactc      2940
     ttcaaagccg attcgcgtgc tggagttaca gacggtaact tacggtacag cagctgcccc      3000
     gttcctctcg accagatgtc tagttcagtt gtgtcaagat gaaagagaga agtttccgct      3060
     agcagccgag gtggttcgtg atgattgtta tgtcgatgat atcctttccg gtgctagttc      3120
     cgctgacgaa gctgtagtcg tccagcggca gattcgaaag atgcttgagt ctggaggttt      3180
     tcgtgtccac aaatggagct cgaattgcca ggaagtgttg agtagtgttc ccgaatctga      3240
     tcgcgagaaa cttgtgtgtc tcgatcaagg aaacgaggtc gtcaaggcac tgggtctgac      3300
     atggtgtccc cagtctgacg aatttatgtt cgtggtgcgt cttccaaaag atgtcaccga      3360
     attcaccaag cgaagtattt tctctgaaat cggcaggttg tttgatccca tcggatttct      3420
     atcccccgtg attgttgttg cgaagcttta catgcagaag ttgtggttga ttgagttgcc      3480
     atgggacgct aaggtcgaag aagatcttct ggcgtcgtgg ttgtgtttcc gtagagccct      3540
     ccccaaggtt agtgaaattc ggattccacg ctatgttatc agcccgtcga ctgtcgcgat      3600
     tgagcttcat ggattttccg acgcttccgt tgttgcttac ggtgcaaaca tttacgtccg      3660
     gtgcatcttg tccgacggta gagctcaact tcgcctcctc tgcagcaaat caagagtttg      3720
     ttcgcccaag aaagatctca acattcaccg caaagagttg atggcgtgtg aactgttggc      3780
     tcgcatgatg gttagagttc tcgagactgt caagttcaag gtaagccaag tcgtactttg      3840
     gactgacagt caggttgtcc tcgcgtggct taagaagtct ttggcgaagc tcgatgtgtt      3900
     cgtccggaac agagttgcta agattcttga gctcaccgca ggatttatct ggaaatatgt      3960
     caggtcaaag gacaatcccg ccgatattgt ttccagaggt atgctccccg aggctctcat      4020
     gtcgaagtcc gagttctggg aaggcccatt cttcctgaga atcgaagtgt acgatgagga      4080
     aatccccccg gaaattccag atgatgaact ccctgagttg aagcttggtc cgatcattgc      4140
     aaccccagtg ttcaatgaag accagcttcc ggtgtttaca aggttcagtt cgttcagaaa      4200
     gctgcagcgt gtgatggcat acgtgcagcg tttcatccaa aattgtcgtc agaaagatcc      4260
     gtcttgtcga gtgttcatga ttcacccaac gatccctgag ttgcgcgctt cgctggaact      4320
     gatcgtaaag attattcagc acgaagcact cagtgacgaa atccaccgtg ttcagaatga      4380
     cgaaccgtgc aagaagattg caggtttgca cccgttctac caggacggtg tcttgagagt      4440
     tggaggtcgg cttcagcaat cctcgctgtt gtttcactcc aaacacccct acattttgcc      4500
     gaaacaccct gtagttgatc ttttgattcg cgcttaccat gaagaaaatt tgcatgtcgg      4560
     tcccaagagt ctgatcgctg ctttgaggac aagattttgg ctgatcgacg gaaggtcgtc      4620
     agttcgcaga atcacccatc gttgcgtcac gtgttttcag gctcgcccga aggttgctag      4680
     tcagttgatg ggaaatcttc ctgcatatcg tgtcaaccaa gctctgccgt tcgaggtcac      4740
     tggtgtggat tacgcaggtc cagtttatgt caaggaaggt cgatacaagc ccaagatcgt      4800
     aaaagcttac atctcggtgt ttgtttgtat ggtcactcga gccgtacatt tggaactcgt      4860
     ttcagatatg agtacagaga cttttctcgc agctctgaaa cgcttcgtag gtcgtcgagg      4920
     acttccccga gaaatccact ccgataacgg aaccaatttc cgcggagcga aaaccgagct      4980
     acatgagctc tatgaattgt tgaagtccca agtcacagtc gatgaaatcg ctcagttctg      5040
     tcagcctcgt gaaattaatt ggtcgttcat tccccccgaa gcccccaact ttggtggtat      5100
     ttgggaagcc gccgttaaga gaaccaaatt tcatttgaag agaactctca aggaagccaa      5160
     gttgtccttt gaagagtacg ctacagttct gactcagata gaaggaattt taaattcacg      5220
     tcctctctat gctacctctt cagaacctaa tgattcagag attctcaccc ccggacacat      5280
     tttgattggt cgtcccctga ccgccgtacc tgaacccagt tgtgaaggtg ttcagataaa      5340
     tcggctcatt cgctggcagt acatgcagcg attgcgcgat gagttttgga gaaagtggca      5400
     tcgcgattat ttgcaaaccc ttcaaccccg cggtaagaat cgagtcaagt ccgccaacat      5460
     caaaccaggt atgattgtct tgttagaaga aaaagatgcg cccgtgcagg tttggaagtt      5520
     gggaaaaatc acaaaaacct tccccgggaa agatgatttg gtgcgtacgg tagaagtgca      5580
     gatcggtaca gtagtgtaca agcgggcgat ccataagatt gctgttctgc caatcattga      5640
     taatgcaaat ttggttaagg tcacagagat tccatctctg cccggcggga gta             5693
//
ID   BEL-38_CQ-LTR repbase;    DNA;    INV; 772 BP.
XX
AC   AAWU01044769;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_CQ_;
KW   BEL-38_CQ-I; BEL-38_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-772
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 230-230 (2011).
XX
DR   Genome; AAWU01044769; Positions   15212   15983.
XX
SQ   Sequence 772 BP; 258 A; 162 C; 162 G; 190 T; 0 other;
     tgttggcgcc aacgccaaag tagatttaat ttgcccaaga aatgatttga atctcagaag        60
     aaatagtttc caaccgatat gattttttaa cagtgtcagg taaagtaaat ttgcaataat       120
     aatccatcca tttccacagt gtcagttaat ccttctattg tttaagcaca taacacaaca       180
     caaatgtacc cgcacataca cgccacacat tgaagaagaa aggaaacagc agcatgtaaa       240
     taaccgcaga ccaactcacc attcgtgtcc tttccctttc acacatattt cattcatgta       300
     tctcacagca cacaataggc tcaaggacgc gcagcgcgcg tctgagcagg cagcttgcgc       360
     aaacagacca ataggagagc agggaatagc aatgaaataa atgaatgaat gaaaagaaga       420
     agtggcgtgt acatggttta gggaaaaagg attgcgcacc cgataggaga ttaaataata       480
     agaatgtttt tgcaaagaag attcgggaag aaatgccgaa gttttagttt aaaaacccaa       540
     tgattttgtt agtccgtaag tcagtttaag cttgtaaata tagaagttaa catcgtgaaa       600
     caagctgttt tcttgcatcc tggccaaagg agtccacttg aagaaagtcg tgattacagt       660
     ccactcgccg attgtcgcct tgaagctgtg ttgtgccacg gaattccctg caacacagtg       720
     gaaaggttgg acaatcaaaa gccctcctgg agccgggcct agcgctccta ca               772
//
ID   BEL-38_DTa-I repbase;    DNA;    INV; 5417 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5417
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (21-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~98% identity to each other.
XX
SQ   Sequence 5417 BP; 1806 A; 1183 C; 1086 G; 1342 T; 0 other;
     ttttttatta ttaatcaagt gcaagcccgc cgcacaaaaa acaatataca agcctgccgc        60
     cggaatgtat atgtttggaa aataatttga cgccgtcctt cttaagaaat ctcagtgcaa       120
     gcccgccgca caaaaaaact tgtacaagcc tgccgcttgt atgtatgtat atgtgtaaga       180
     gaaaaaattt gacgccattt ttcttaataa gtacacacga cgccgttcta agaacttgaa       240
     aaagccacgc cgaaatatac agttgagaac cgtcaacaat tttaataagg tgcattatca       300
     ttgattgctc caacgccgcc tacaccccac atgtgtataa ttatactgtg aatgccttca       360
     cacataaagt ccaaactgga atgccaagag aaagccagcg tcgcaataaa ggaaagccac       420
     cagcccgtct aggatttgaa gacaagatgt caggatcaga ggatgaaaca gatgaaacca       480
     taatcgagct caacaagatg gacgaacttc aagagaagct gcgagagctg gagctcaaat       540
     ttcaagaatc gcaaaatcaa aatagcgatc ttcgttcatc actgcgccgc ctaactagcc       600
     aacatgaaca tgaggaacag aagaaagcac aagcactgat tagtagtgag ccacttcaga       660
     caaatatggg taagttaatg ccaaacttca ctgcgacata tacttttcag acgtgcactt       720
     gccatgccag cggcaattgc cagtttacag ctctcaatcc agtcgtccat atgtaccaat       780
     atcatttccg ccagcctcct ataacagtac ctatcaggtc accgcaccgc cgcccacatc       840
     tgctcactcg ctcccgatct tctcaacgcc ttcaacctca tcgcaggccc agcagccagg       900
     ccagccgcat ctatatcagc cgtattcacg caagctacag gatcttccga cgttcgatgg       960
     aacgccagag cagtggccaa tgtttcatgt agcctatagg gaaactacaa acgcccacag      1020
     ttataccaat ttggagaatt tgtctcgcct tcaaaagtca ctgcatggtc cagctaagaa      1080
     tttggtagca tcattactta tatattcaaa caatgtcgaa acaattatgc aaacattaaa      1140
     taaccactac ggacgacccg aagtgctaat acgaagtcag ctcgataaag ttagagcatt      1200
     tccgccagtt aaatataaca aaattactga tattatcgac ctcagtgtca tgaggaagag      1260
     tgggccaagt atatcatgga aagaggaatt gtatatccgt cagtcaaaca atttgcagga      1320
     tggcttcaaa acattgcaag ctatgtatca atagcaatgg gcagtacatc gacgatgacg      1380
     accgaaaaaa cacaggaaaa gaaaagtcaa cctaaacaca ttttcacagt tgacaataaa      1440
     caggagcgtt cccgcaaatg cccaatttgt aatcacgacc acaaggtcta tcaatgcgac      1500
     aatttcaaga agaagacctt acctgaaaaa tgggaaatcg ttaagaaaca acgactttgc      1560
     tttgtgtgtc tttgcccggg gctctctatg caaacttgct cattccgtag atcgtcttct      1620
     tcacgattca aagaaccaat ccgctaagat tgagaatatt ccagacgaaa caaagaccga      1680
     catagtttct acaacaataa tggataatga accaccgaac acgacccttt ttaagttcgt      1740
     gcctataacc gttacaggtc ctaaatcaca atgcacaata attgctttta tcgacgaggg      1800
     ttcaactata tctcttatcg aagaggaaac agccgaattg ctgggtctta aaggatcgaa      1860
     aagccatatg acattaaagt ggataggtaa caaatccaca acagaaatgt ctcaacaaat      1920
     aaacctggaa ttacaaggaa accctacagg atctctatct ttttgccata tgaaaaatgt      1980
     aagaacagtt aaaaggttaa tgttaccatg ccaagatcta aatttgccaa aattttgtaa      2040
     atattttcca tgcctaaaag atttgcctat tgaaaattat actaatgcta cgccgaaact      2100
     attaatagga atgccccata tcaatctagt cagacctttg gaaataatta atctaaatgt      2160
     aaacttctca gctcatagaa ccaaattagg atggatattg ttcgggtcga acgaaaacag      2220
     acacagcggt gtagtatgcc atgtagaaga atgtaaaaat tcaatggacg acattcaaaa      2280
     cataatacat aacttcataa acattgacca gtttggggtt agactaacat taccgcttaa      2340
     atcagatatt gaccaaagaa gtgaaaagat cttgaaggag acgacaaaca aaaccgaaat      2400
     ggagactggg cttttatgga aaaccgatat tattaaaatg ccagacagtt acgacacggc      2460
     gctacgtcga ctgaaaatag cggaaagtaa aatgtccaag gatgaatgaa aaggatatgc      2520
     gcgtaaatta agtaaggtag aaaaaatggt atttgccgca tttcgccgtc aataatttaa      2580
     ataaaaataa actcagacta gtattcgacg ccgccgccca aattaatgga gtgtcactga      2640
     actcatgcct atcagccaat cccgttgccg tctatactgt tcaagtttcg tcaacgtaaa      2700
     ataggaattt gtgcggatat taaagaaatg ttttaccgtg tattcatcag aaaggaagac      2760
     caagattatc aacggtttct atggagagat tgcgatacga cacgttacga gagaaccaga      2820
     cgtctatgtg atgaatgtga tgatattcgg ttcagccagt tcaccctgtt cagctcaata      2880
     tgtaaaaaat cttaatgccg agttctttaa aaacgagagt cccagagcag taaaagccat      2940
     tgttgatcat cattacgtcg atgattatgt agacagattt gacacaatcg atgaagcaca      3000
     taacgtaatt aacaaggtcg tacaaattca tctgaacgga aattttgaac ttcgtggatt      3060
     cgtgtcaaac tcaaagaagc ttctggcaag gatgaacaac tcaccagaga tcatgacgtc      3120
     gccaacaaca ttaaatcact ctgagccgaa cactgaaaaa atacttggac ttcattggga      3180
     tcatggatca gaccagttct gtttcatagt aaagtttaaa ggagtgccga acaacgtagc      3240
     tgaagcaaaa atcacctcca acaaagagac aagttctgtc catgataatg tccatatgtg      3300
     acccctttgg atttatagca ccttttgtaa tgaaagccaa aatcataatt caagaattat      3360
     ggcgcctaaa tacaatgtgg gatgaggtta ttcccgagag ccttcacaac gtatggatta      3420
     cttggtacga ccaactgcaa aaggtaaaag acgtaaggat tcacagatgc tatcataata      3480
     atatcaccaa acctgatctc gacttgcaac ttcatatttt cgtagacgca agcgaggaag      3540
     cctttgccgc cgtcgcttac tggagagtac tgtatcagga acaagtggca atagtgtttg      3600
     tgatgggtaa ggctaactgt agtcctataa aaacattatc aataccacgc ctcgaactac      3660
     aagctgcagt cctgggagtt cgacttaaaa acgccataat aaataaccat gaagtcagcc      3720
     caaaacatgt ttatctgtgg tcggattcaa aaactgtaat aagctggata caatcagata      3780
     gccgtcgcta taagcaatat gtcgcccaca gagtaacaga aattttggaa agctcaaaga      3840
     tcgaccaatg gaaatggatt cccggaacga aaaatcccgc agacgccgcc acacgcttgt      3900
     cctcaaaggc agatccaagc gtctggattg atggacctcc atttttatat ctcgacagct      3960
     ccgagtggcc gtcaccacct gatgatataa aatctcacaa ccatgacaac gaattacgtc      4020
     caaaatttgt atttactatt gcgagtctat tcttgggttc gccgtgccat cgagctgttc      4080
     aaaaataaat cctttaaaag gtatacagta ctaacagctg aagaaatttg tagttatgaa      4140
     aaactattat gtaaatcagt ccaactcgct tgtttccacc aagaagtaac tcagttaaag      4200
     aatggtcaac ccataaccaa ttccagtccc atatggaacc tttcgcccaa actgggtgac      4260
     gacggtgtac tgcgttggtc ctatgacaaa acgtccaatt atattaccca aaacccataa      4320
     actgacttta ctgatcgccc agcatcatca tgaactgtgt aaacaccaaa atgtggatac      4380
     catgatctgt tccattagac aaacattttg gataccatct atttgccgtt tagctaaaac      4440
     tattaagacc aactgtcagt tatgcaaaaa cttatccgca atgccaaagc cacccttatt      4500
     gggacagttg cctatggaca gagttgcagc ctttgtcaga ccctttacgt atacagggct      4560
     cgattatctt gggcccctat tggtagctat tggcaggcga cgtgaaaaaa ggtgggtagc      4620
     gttattcacc tgtatgacta caagagctat acacctcgaa ttgtctaagg atttgtcatc      4680
     ggatgttgcc attatgtgtc tcaagaactt ttgttgccga agaggagtac caaagagaat      4740
     tagaagtgat caaggaacga acttcgtcgg tgtcggaaaa gagcaatgga ttgaggtggt      4800
     ggatgcggtt gcaatggaga gtggtcgctg tggtattgag tgggtattta acacgccagg      4860
     caatcctgct gctggtgggg catgggatta accctcaaag aaaaggtacc tcaggttgaa      4920
     actcttcaag gtctgttaaa tgaagctgaa aaccttatta attctcgtcc tttaacacac      4980
     ctaccgatcg attcatacga agacgatccg cttactccaa atcatttttt acttggctgc      5040
     ccaaaccaag tacaaacacc ggtagttgac gaaaacgtct gcctgaagaa gcaatggcat      5100
     atccggcagc agttaatgca caccttctgg aaacgatgga tccaggagta cttgccgacc      5160
     ctaacccgac gcactaagtg gttcaaccgt gtggagccaa tacaaattgg agatgtggtc      5220
     ctgatttgcg acgagaccga tagccgtggt gtatggagga agggaagaat cattgaaatt      5280
     caatcagcaa aggacggaca agtgcgatca gcaacggtaa aaactgcaac tgcagtactt      5340
     cgaagaccag cgtccaaatt ggccgtcctc gacgtcattg gtgaatctca gcaggctcct      5400
     attcacgggg gccggaa                                                     5417
//
ID   BEL-38_DTa-LTR repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-409
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (21-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, ~98% identical to the other flanking LTR.
XX
SQ   Sequence 409 BP; 130 A; 80 C; 65 G; 134 T; 0 other;
     tgttaagaaa tgctctttat tattataatt ttcatttaaa ttaagtcaag ataaattcaa        60
     atacttgtac cctttatcat ttaatgttta atttgaaacg attactttga aacgattact       120
     gtgtaatcga tcacatacga ttataagctc acgataggct cgatagagtt gccacttttg       180
     tactttcagc cgaaacggtt ggtacgtagt ctcagcataa aaactaattt gtgttctaat       240
     ttaagccttt aaaaactaga taataaaacg cttcacgctt cgccttaaac gaataaagcc       300
     atcgtttcgt acgacgcacg ccgctcgtcg cacgcacgta ctgcaattgt caagcagaaa       360
     ataatttgcg tttttattat gtcttgatcg gccgccacag aagtcaaca                   409
//
ID   BEL-38_SpEx-I repbase;    DNA;    INV; 6070 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6070
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6916-6916 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           806..6040
FT                 /product="BEL-38_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MTEKEEKELIKKRASYKGRLTVFSNYLEDLNDTLTQT
FT                 QINELQLRLGKIELLYSQYDEIQLRLECIAEDINSQISERNDFESIYYKLV
FT                 ARAQSLIAKQDDIISEDKLSRISNNRLVKLPTIQLPKFNGTYDKWLEFRDT
FT                 FSSLIHLNDQIDKINKFHYLRASLEGTAAVVIQSIEFSADNYSIAWDLLNE
FT                 RFDNKRLLIQNHVSALFNIETVSKESSDSIKRIIDSLNKNLRALESLGEPT
FT                 KFWDTLLIYIVTHKLDTRTYREWEEEKGHLDKNKSITLEMFLTFLRNRADL
FT                 LETLDLSRSQSKINNNASQSKHRTMISLSSETPSQKTKNNNSSSQVSCPHC
FT                 SDKHNLITCPQFLGMTNEKRLELLPQYKVCFNCFRSGHYANHCKSHGCKVC
FT                 RRKHNTLIHVVGASHKSNAPTSQSDNTIAPGNKSIESKNDTNVTLSALTTT
FT                 YIGNKSKGQVLLATALVKIYDNNNREHLARAILDTGSTSCLMTKKLCDLLN
FT                 LPTVRVNESIQGINNXKSNISKMCSIFIKSLSENFSTNLYCFILPSITDEV
FT                 PCHKLLINNLNIPSDICLADPHFHTPSTVDLIIGADVFWDLLGRQKIYLGE
FT                 GKPILFESRLGWLVSGPLSYSGQVAVSPTTHKANIANIHVSSLLTPTNEDD
FT                 IQNHLARFWDLEEVTHQSSSYSEEEAKCEEHFVLNTTRLSDGRFCVRIPLK
FT                 QSPHLLGDSLARAKHCLLSIERRFNKQPALKTLYCDFMKEYSSLGHMSECT
FT                 VDPKQLSYFIPHHGVLRESSITTKLRVVFNASSLTTSGISSNNLQMVGPVV
FT                 QDDLMSILLRFRKHQYIISADVEKMYRQVAVHPDDRYLQRILWRDNPSESI
FT                 KIYELNTVTYGTASAPFLATRCLKQIGLDCKDERIANIIMHDFYVDDLLTG
FT                 GDTISDVTSIREKITAELDSAKMPLRKWKSNYNFIMSDQDSNSFVNLNIGS
FT                 NEPSKTLGLNWLTSSDTLLYSISAMSITENVTKREVLSVISQIFDPLGLLA
FT                 PCIIPMKVMMQRLWLHKLSWDDFLPPDVAKTWSNIIERLPILNNLRIPRLV
FT                 FCNSWKVVDLHIFCDASQIAYGACIYVRSINNNNEVSVRLLTAKSRVAPIK
FT                 PITIPRLELCAALVGVRLHRKVVDSLNAPINSCVFWSDSTIVLGWLKMIPG
FT                 KLQAFVRNRVSEIVEKSNAGNCAWRHVPTHLNPADLISRGTDVSQIQNLDL
FT                 WWSGPNFLLKDTREWPSFPTSVEPLPEIKSEISLLTVSDTSKSFIEFHRFS
FT                 NFLRLNRTIAYMLRFINNCKKQSSTTLHLNEDDLQNALNIIVKQSQIESFP
FT                 EYQLLLKGENLPKGSPLNKLNVFLDENKLMRVGGRLQNSTFSYEKKHPLVI
FT                 QSTHRFSKLLFEFTHKSLMHAGPQLLLACIRDTYWPIGGRNLAKSCYHRCI
FT                 VCSRVTAKPFTPIMGHLPERRLASGSHPFECVGVDYAGPILSASRQGRGCR
FT                 LVKVYILLFVCFTTKAVHIELVGDLTSHNYLSALRRFMSRRGKPSRIYSDN
FT                 GTSFVGAFNELGKFLRDNSSSLSGDIASEGITFNFIPPYAPHFGGLWEAGI
FT                 KSVKYHLKRVMGNCHLTYEELYTALVQIEALLNSRPLTPLSSDPNDLLPLT
FT                 PGHFLIGRTLTSLPAPSYDATSITHLKRYERIEALRQHFWSRWNKEYISEL
FT                 QQRTKWRSSKATVGINRLVVIKEDNLPPLKWRLGRIAAVYPGRDGISRVAD
FT                 IRTASGTIRRACSKICPLPVDEDSC"
XX
SQ   Sequence 6070 BP; 1896 A; 1127 C; 1181 G; 1863 T; 3 other;
     taaattggtc catacgagct ggataaagga atcagttaca agaaaaatac aggaaaaata        60
     attggaaata attgaaagat actaccgttt ggaaatacgt gagtagctgg ctaaggtcaa       120
     agggcatcca cgcaagaaaa aggatattca aggactttta aggatatttg gccagtgcag       180
     cgtcagtatt tgcattattt gtaaacccat tacgatcatt caggtagtat ttaatgattt       240
     tatggaattg tgaaggttag tatctattgg tatcaaagtt ctttgttctt ttgcacatgt       300
     gtgatttcat tcaaattgcc aagacattgt tattatttct ggtattctaa tctattatgt       360
     aaggataatt aagcagcaaa ctaggcttca attaaagtta gccattattt ttaaaaagtt       420
     tcctttgtta tcttgcatta gatgttataa gaaatcatac ataataagtg ccagccaaat       480
     taatagttac tttgtattcc tatcatcaaa ataatttaat cctgtagttg tgcagtaatt       540
     tgcggatagt gataacgatt atttatattc ttattgttag aatcattgat attgttgaaa       600
     taattactta cccactttag ataattaaca tattatgtgt aataccggta tgtatgcata       660
     actggttttt gtgagatttt gtttagcatt gattacctta aattgtattt gtagtacggt       720
     tcaaccaakt gagtattatt atagaagtat aatagtttta atttaaactt tgtaacattc       780
     cagttagttg cctgcttccc aaacaatgac cgagaaggaa gagaaggagc tcattaaaaa       840
     acgtgcaagt tacaaaggcc gattaacggt attttctaat tatttagagg atttaaacga       900
     tactttaacg caaacccaga tcaacgaact gcagttacgc ctcggtaaga ttgaacttct       960
     ttattcgcaa tatgacgaga ttcagttaag gttagagtgt atagctgagg atattaattc      1020
     acaaatatca gaacgtaatg attttgagtc gatttattac aagcttgttg ccagagcgca      1080
     aagcttgatc gctaaacaag atgacatcat tagtgaagat aagttgtctc gtattagcaa      1140
     taatagactg gttaagctac ctaccatcca actgcccaaa tttaatggaa catatgacaa      1200
     atggttagag tttcgcgaca cattttcaag cttgatacat ttgaacgatc aaatagacaa      1260
     aattaacaag ttccattacc tccgtgcttc cttggagggg acagcagccg tagtcataca      1320
     gtcgattgaa ttctctgctg acaattattc cattgcgtgg gatttattaa atgaaaggtt      1380
     cgataataag cggttactaa ttcagaacca tgtgtcagcc ctattcaaca ttgaaacggt      1440
     tagcaaagaa tcctcggata gcataaaacg tatcattgat agtttaaata aaaatctacg      1500
     tgcgctggag tcgttgggcg aaccaacaaa attttgggat actttattaa tttatatwgt      1560
     cactcataaa ttagatacga gaacatatcg tgagtgggaa gaagaaaaag gtcatttaga      1620
     taaaaataaa tcaataactt tagaaatgtt ccttacattc ttaagaaatc gtgccgattt      1680
     gcttgaaacg ttggatttgt cacgcagtca gtctaaaatt aataataatg cctctcagtc      1740
     taagcacaga acaatgatat ctctaagcag tgaaacacca tcacagaaaa ctaaaaataa      1800
     caatagttca tcacaggtgt catgccccca ttgtagtgac aagcacaatt taataacctg      1860
     tccacagttt cttggtatga ccaacgagaa acgacttgaa ctactgccgc aatacaaggt      1920
     atgctttaat tgctttcgat ctggtcacta tgcaaatcat tgcaagtctc atgggtgcaa      1980
     ggtatgtcgg cgtaagcaca atacgctgat tcatgttgtt ggcgcttctc ataaatctaa      2040
     tgcgcctact tcacaatctg acaacactat tgctccaggc aacaagtcaa tagaaagtaa      2100
     aaatgataca aatgttacac tatctgcact aactacaact tatattggta ataaaagtaa      2160
     aggtcaagtc ctgttagcga ctgcattagt gaaaatttat gataataata accgtgagca      2220
     tctcgctcga gccatattgg acacgggcag tacttcttgt ctgatgacta agaaattatg      2280
     tgatttgcta aatttaccca cggttcgagt aaatgagtct attcagggaa ttaacaatwc      2340
     aaaatcaaat attagtaaaa tgtgcagtat ttttattaaa tcactaagtg agaatttttc      2400
     cactaatctt tattgtttta tattaccgtc tattacggat gaagtaccgt gtcataagtt      2460
     actaattaac aatttaaata taccgagtga tatttgttta gccgatcccc atttccacac      2520
     gccatcaacg gtggatttaa taataggagc agacgtgttc tgggacctac tggggaggca      2580
     aaaaatctat ttaggtgagg gtaaaccaat actatttgaa tctaggctag ggtggctagt      2640
     ttcaggtccc ttgagttata gcggccaagt agcggtttca ccaacaactc ataaagcgaa      2700
     catagcaaac attcatgtca gttctctact cactcccaca aatgaagatg acattcaaaa      2760
     ccacttagcg cgtttttggg atttagaaga agttacccat cagtcatctt cttattcaga      2820
     ggaggaagct aagtgtgaag aacattttgt actaaataca actcgacttt cggacggtcg      2880
     gttttgtgtg cggataccac tcaaacaatc acctcatctg ctgggcgact cattggctag      2940
     agctaaacat tgtctcttat ctattgaacg caggttcaat aagcagccag ctttaaaaac      3000
     gctttactgt gatttcatga aagaatacag ttcattagga cacatgtctg aatgtacagt      3060
     cgatccaaaa caactgtcat attttattcc ccaccatggt gttctccggg aatctagcat      3120
     aactacaaag ctaagagtag tttttaatgc cagcagtctc accacgtcag ggatttcgtc      3180
     taacaatctc caaatggtag gtccagttgt tcaggatgac ttaatgtcta tccttctgag      3240
     gtttagaaaa caccaataca taatttctgc tgacgtagaa aaaatgtacc gtcaggtagc      3300
     tgtacaccct gatgatagat atttgcaacg aatattgtgg cgtgacaatc cctcagagtc      3360
     tattaaaatt tacgaactaa acacggtaac atatggcaca gcaagtgcac cttttttagc      3420
     cactcgttgt ttgaagcaaa tcggcttgga ttgtaaggat gaaagaattg ccaacatcat      3480
     catgcacgac ttctacgtag atgacttgct gaccggcggg gatacaatat ctgacgtcac      3540
     aagtattcgc gagaaaatca ctgctgaatt ggattcagcc aaaatgccac taagaaagtg      3600
     gaaatctaac tataacttta ttatgtcaga tcaagattcg aattcatttg ttaatttaaa      3660
     tattggttct aatgagccaa gtaaaacatt aggtttgaac tggctaacaa gctccgatac      3720
     gcttctttat tcaataagtg caatgtcgat aacagaaaat gtcacaaaac gtgaagtgtt      3780
     gtcggttata tctcaaatat tcgacccttt gggcctatta gcaccttgta tcatacctat      3840
     gaaggtaatg atgcaaagac tgtggttaca caaactttca tgggatgact tcttaccacc      3900
     agatgtcgct aaaacatggt ctaatatcat tgaacggtta cctatcttaa ataacttacg      3960
     catcccccgt ttagtttttt gtaactcgtg gaaagtggta gatttacata tattttgtga      4020
     tgcgtcacaa attgcttatg gtgcttgcat atatgtaagg agtattaata ataataatga      4080
     agtttcagtg cggttgctca cggcgaaaag tagggttgct cctatcaagc caatcaccat      4140
     tcctcgactc gagctctgcg ccgccttggt gggtgtgcgg ttacatagaa aggtggttga      4200
     ctcacttaat gcaccaatta acagctgtgt attttggagt gattctacaa tagtgctggg      4260
     gtggttaaaa atgattccag gtaaattaca agcatttgta cgtaatcgtg tatcagaaat      4320
     agttgaaaaa tctaatgctg gcaattgcgc ctggagacat gttcctacac acctcaatcc      4380
     cgctgatctt atatcccgag gtactgatgt tagtcaaatt cagaatcttg atttatggtg      4440
     gtcaggccct aactttttac tcaaagatac acgtgaatgg ccttcatttc cgacttcagt      4500
     agaaccgctt cccgaaatta aatctgagat ttctttgtta actgtttctg atacttcaaa      4560
     gtcattcatt gaatttcacc gcttttcaaa ctttttgcgg cttaaccgca ccatagcata      4620
     catgctacga tttattaata attgtaaaaa acaatcatcg actactttac acctgaatga      4680
     agatgattta caaaacgctt taaatataat tgtaaaacag tctcaaatag aatcatttcc      4740
     ggaatatcag ttattattga aaggtgagaa cttaccgaaa ggtagtccac taaataagtt      4800
     aaatgtattt ttggatgaaa ataaattaat gcgtgtaggc ggtcgcttac aaaattctac      4860
     attttcatat gagaaaaaac atccgttagt tatacagtcc actcatcgat tttctaaatt      4920
     attatttgaa tttactcaca aaagtttaat gcatgcagga ccgcaattat tattggcttg      4980
     tattagagat acttactggc caataggtgg gcgcaactta gctaaatcat gttatcatcg      5040
     ttgtattgtt tgcagtcgtg tcacagctaa accatttact cctatcatgg gacacttacc      5100
     tgagcgacgg ctggcgtctg gtagtcatcc attcgaatgt gttggggttg attacgctgg      5160
     acccatactg tcagcttcgc gacaaggtcg tggatgtcga cttgtaaagg tttacatttt      5220
     actatttgtt tgtttcacga caaaggcagt tcatattgag ttggttggtg acttaaccag      5280
     tcataattat ttgtcggcac ttcgccggtt tatgtcacgc agaggtaagc cgtcgcgtat      5340
     ttattctgac aacgggacct cgtttgtagg cgcttttaac gaactaggga agtttttgag      5400
     ggataatagc agttcgctgt cgggtgacat tgcctctgaa ggaattacct tcaattttat      5460
     tcctccttat gctccacatt tcggtggtct ttgggaggca ggtataaaat ctgtgaaata      5520
     tcatttaaag agagtaatgg gaaattgtca tttaacttac gaagaattat atactgcact      5580
     ggttcaaatt gaagccctcc ttaactcacg cccgcttacg ccgttgtcat cggaccctaa      5640
     tgaccttttg ccgctgactc cagggcattt cctgataggg cgaacattaa cgtccttgcc      5700
     tgctccgtct tatgacgcta cctctatcac gcacttgaag agatatgaga gaatcgaggc      5760
     tttacgtcag cacttctggt cgaggtggaa taaagaatat atctcggaac tacagcagcg      5820
     aaccaagtgg agatcttcaa aggctactgt gggaattaat cgccttgttg tcataaaaga      5880
     agacaattta ccaccactta aatggcgact tggccgcatc gcagcagtat atccgggacg      5940
     tgatggaatt agtcgtgtgg ctgacataag aactgccagt ggaactattc ggcgcgcatg      6000
     cagcaagata tgcccactgc cagtagatga agattcgtgt tgaaagatga cctttcaacg      6060
     cccgcgggca                                                             6070
//
ID   BEL-38_SpEx-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-38_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-226
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6945-6945 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 226 BP; 57 A; 46 C; 36 G; 87 T; 0 other;
     tgttcagaat ccaacattaa cgcctgatag aaatcacaat cccttacgtc ttatcatgtt        60
     ggagtgcttt aatattacat caggcgccta ttgtgcgggt gtcttcgcat gaagttaccc       120
     acatcgtttt ttaatttaat tgtaactttg cttttgttgg gaatacagtc tcttttactg       180
     atacgaccta aattttattt ttcctggtta atcattcacc gttaca                      226
//
ID   BEL-39B_AnFu-I repbase;    DNA;    INV; 4476 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-39B_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4476
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 755-755 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~95% identical to
CC   the parts of BEL-39_AnFu-I. This family is internally deleted.
XX
FH   Key           Location/Qualifiers
FT   CDS           1656..3926
FT                 /product="BEL-39B_AnFu-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MANTKEKITKFEEEVGSDVCEMRKEIERLKREYKDLS
FT                 EKHEETKRESQEKQTKLVTQLAEKEAESKKLRKEKGQKRELQDGSATVASA
FT                 STSNSSPASELLIKGLVDALNERSKRDSLMELPEFNGDFKKWNHFKSVFYK
FT                 TSEEAKFSDLENLNRLQKALKGDALECVSGLMLDAQNIEGILQRLEKEFGT
FT                 PDLIYSALLKELLAVENPTMQKPKSFITFMHALNNLVINMNTIGEPEYLND
FT                 QRLLKDLENKIPTNLKHKWYNHILADNENYGRSKLRTLEDFAKWLKPTENL
FT                 AIMLTADVANDVVNSQSHQHNQQLRHRNFRAQPRQQFQANIQSQPRRRMGC
FT                 LICGQNHRTTECFQFQNMSVERRWETVRRLRICTNCCNQSNHDAQNCFLPP
FT                 QCRQYGCRARHHTLLHRATPTGLRQVENINIHHGTDLPELYFPIIPVTLRH
FT                 NNREVDTFAFMDTGSSASLIHCELKEELQVNGSLRPFSLAWTNGSIQDEPE
FT                 SQTISISVKDQDGRFISLDGLRTVESMVLPKQTVNGMELRRKYRHLRGIDL
FT                 QSYRDGAPKLIIGLPHAHLICALQTRTGRAGEPIAIQTHLGWVLLGPNDLN
FT                 RKQAKLFSLIEAKNAKKDIASTMRNHVPKEDFGVKLNYKIPQPKDEKRTEI
FT                 EKTIRKTETVHEIGKTEVVSIPEECGQSLRGLQSLERKLTRDGTSEKLHRE
FT                 ETDAYGKKDCARENDRSETIRDSLGPKANYAPNFAVVKYNKPIRKPRLVFD
FT                 TGTRSK"
XX
SQ   Sequence 4476 BP; 1501 A; 924 C; 1215 G; 835 T; 1 other;
     ttggtggctc cagagaggaa ggtagtactt gctaacgttc caaggcacga gaaagtttcc        60
     cgccacgagg taaccggagg accccattcc cggtcgaagg aaggaagacg ccaagcgccg       120
     aagagaaccg gaggactcca ttcccggttg gacggaggac gagagagggc cacccgcctc       180
     tagcagaccg gaggaccgca ttcccggctg aaggaaggac gagagtaggc cacccgcctc       240
     gagcagaccg gaggacgttc attcccggtc gaaggaagga aggaagacgc taagtggtga       300
     agagaaccgg aggaccccat tcccggttgg aaggaggacg agagagggcc acccgcctct       360
     agcagaccgg aggaccgcat tcccggctga aggaaggacg agagtaggcc acccgcctcg       420
     agcagaccgg aggacgttca ttcccggtcg aaggaaggaa ggagaggggc aaccgccctg       480
     tggaaaccgg aggacgttat tcccggtcag cgaaaggaag gagaggggca accgccctgt       540
     ggaaaccgga ggacgcttat tcccggtcag cgagaggaag gagaggggca accgccctgt       600
     ggaaaccgga ggacgttatt cccggtcagc gaaaggaagg agaggggcaa ccgccctgtg       660
     gaaaccggag gacgttattc ccggtcagcg aaaggaagga gaggggcaac cgccctgtgg       720
     aaaccggagg acgttattcc cggtcagcga aaggaaggag aggggcaacc gccctgtgga       780
     aaccggagga cgttattccc ggtcagcgaa aggaaggaga ggggcaaccg ccctgtggaa       840
     accggaggac gttattcccg gtcagcgaaa ggaaggagag gggcaaccgc cctgtggaaa       900
     ccggaggacg ttattcccgg tcagcgaaag gaaggagagg ggcaaccgcc ctgtggaaac       960
     cggaggacgt tattcccggt cagcgaaagg aaggagaggg gcaaccgccc tgtggaaacc      1020
     ggaggacgtt attcccggtc agcgaaagga aggagagggg caaccgccct gtggaaaccg      1080
     gaggacgtta ttcccggtca gcgaaaggaa ggagaggggc aaccgccctg tgaagaccgg      1140
     aggacgctca ttcccggtcg kaaggtatag tgatagtgaa gtgcaacggt tccagcggca      1200
     gcagcaacag tggtgcctaa aacggcttaa aaaaaaaaaa aaatagtgcg acggttccag      1260
     cggcagcagc aacagtggtg cctaaaacgg cttaaaaaaa aaaaaaaaaa aaatagtgcg      1320
     acggttccag cggcagcagc aacagtggtg cctaaaacgg cttaaaaaaa aacaaaaaaa      1380
     aaaaaaaaat agtgcgacgg ttccagcggc agcagtaaca gtggttaagc ctaaaccggc      1440
     ttaaaagagt gcatcagcag cgacggcagc agcagcagca gcaaccggag cggtagcagc      1500
     ggcagcagca acgacagcag cggtggcagc agcagcagca gcaaccggag cggtagcagc      1560
     ggcagcagca gcatcagcag ccgaagcagt agcagcaact gcagtagtag cagcacaaca      1620
     agaagcgacg aacccgcaaa caaaccgtga gtaaaatggc aaacactaaa gagaaaatta      1680
     ccaaatttga ggaggaagta gggagtgatg tgtgcgaaat gagaaaagaa atagagaggt      1740
     tgaaaaggga atataaggac ttatccgaaa aacatgaaga aacgaaacgc gaatcgcaag      1800
     aaaaacagac caaattagtc acacaattag cggaaaaaga ggcagaatct aagaaattgc      1860
     gcaaggaaaa gggacagaaa cgtgaattgc aagatggaag tgctacagtc gcaagcgcat      1920
     cgacaagcaa ctcaagccct gcttccgaat tgctcataaa gggattggtc gatgctttaa      1980
     acgagcggtc taaaagagat tccttaatgg agcttcctga atttaatggt gattttaaga      2040
     aatggaacca tttcaaatca gtgttttaca aaacaagtga agaggctaaa ttttcagatt      2100
     tggaaaatct aaatcgtctg caaaaggctc tgaagggaga tgccctggaa tgcgtgagtg      2160
     gtttgatgct cgatgcgcaa aacatcgaag gaattttaca gcgattagag aaggaatttg      2220
     gtacgcctga tttgatatac agtgcgttat taaaagaatt gctagcagta gagaacccaa      2280
     cgatgcagaa gccgaaaagt tttataacgt ttatgcatgc gttaaacaac ctggtcataa      2340
     acatgaacac tataggagag ccagaatatt taaacgacca acgtctttta aaggacttgg      2400
     aaaataagat tcccactaat ttaaaacaca agtggtacaa tcatatcttg gcagacaacg      2460
     agaattatgg tagaagcaag cttaggactc tcgaggattt tgctaagtgg cttaagccca      2520
     ccgaaaattt ggctattatg ctaacagcgg atgttgctaa tgatgttgtg aattcacaat      2580
     cgcatcagca caaccaacag ttacgtcata ggaattttcg tgctcaacca cgacaacagt      2640
     tccaagcgaa tatccaatcg caaccaaggc gtagaatggg ttgcttgatt tgtggccaaa      2700
     atcataggac gacagaatgt tttcaatttc aaaacatgtc ggtcgaacga agatgggaaa      2760
     cggttaggcg gttgcgcatt tgcacaaact gttgcaacca gtcgaatcac gacgcccaaa      2820
     attgttttct gccaccacaa tgtcggcaat acggatgtag agcgagacat cataccctat      2880
     tacatagagc aactcctact ggcttaagac aggttgagaa cattaatatt caccacggta      2940
     ctgatttgcc tgagttatat tttccaatca tcccagtaac gcttcgtcat aataataggg      3000
     aggtcgacac attcgcgttt atggatacgg gttcatcagc gagtttaata cattgtgagc      3060
     tcaaagaaga gttgcaggta aatggatctc tacgaccatt ttcgctagct tggactaacg      3120
     gatcaataca agatgagccg gaaagtcaaa caatctcgat ctcggttaag gatcaggatg      3180
     ggagatttat aagcctcgat ggattaagga cagtagaatc gatggtgctg ccaaaacaaa      3240
     cagttaacgg aatggaatta agaagaaaat atcgccattt gagaggcatc gatttacaaa      3300
     gctatcgtga tggagctccg aagctaatta tcggattacc acatgcgcac ctaatatgcg      3360
     cattgcaaac cagaactggc cgagcaggcg aaccgatagc aattcaaacc cacttgggat      3420
     gggtattgtt aggaccaaat gatcttaata ggaagcaagc aaaactcttt tctctaatcg      3480
     aagcaaaaaa tgctaagaag gatatagcga gcacgatgag aaatcacgtc ccaaaagaag      3540
     atttcggtgt taaattgaat tataagattc cgcagcccaa ggacgaaaag aggacggaaa      3600
     tagaaaaaac tataaggaaa acagaaactg ttcacgagat aggaaaaacg gaagtcgtca      3660
     gtataccaga agaatgtggc cagtccttga ggggactaca aagcctcgaa agaaaattga      3720
     cacgagatgg aacgtcagaa aaattacacc gcgaggaaac agacgcatac ggcaaaaaag      3780
     attgcgcgcg tgaaaacgat cgaagtgaga caataagaga tagtcttggt cccaaggcta      3840
     attatgcacc aaactttgct gtagtaaagt acaacaaacc catacgtaaa ccaagactgg      3900
     tctttgacac aggtacaaga agtaaatagc tttctctcgc tatgtattga aacctatatg      3960
     caattcatga taaataatat gtcttacgca tattcctttg gaccacgaag acgatgagcc      4020
     tctcacacca aaccactttc taataggctg ttctggagaa gcagaaccaa ctcagtgtga      4080
     gatttcggaa gctgaagctt taaagacaca ttggaagaaa tcccaatggg ttgcacaaaa      4140
     atactggtct aggtggataa aagaatttct acctcgattg gtaacgcgag agaaatggtt      4200
     aaaaccagtg aaagaattgc gcataggcga catagtagca tttccagatg agcagacacg      4260
     cggaaggtga cgtaagggga taattacgca agtgcaagaa ggaaaggata aacaggttcg      4320
     atccgtaacg ataagagtag gaagtttatt tattagaaga ccagcggtaa aggtcgcacg      4380
     gttggaggtt cgcgccgaag aagaaatagg taggacataa ttccgtcagc ttattattgt      4440
     ttgtaacacc tctacgagga attacggggg agagga                                4476
//
ID   BEL-39B_AnFu-LTR repbase;    DNA;    INV; 697 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39B_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-697
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 757-757 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 697 BP; 216 A; 135 C; 181 G; 165 T; 0 other;
     tgtcgctgac ggaaattatg tcctttttag gaaccgctgt ccgcgctcaa aaaaggtccc        60
     tagcttagga gaatagtagc aggagagcgg acttagccgc tctcaacgta aagataagct       120
     aggagactaa gcttacctct ctcgcatcgc ttcgccgtga agcgatgagt gagagggaag       180
     ttaagcgtct ctgtctgtct cgcttgctcc tgcaggcgca gacagataat gcaaggacaa       240
     tgcggggatc ggcgcgaaaa atcctcccca aaattattaa atttattagg caaataggga       300
     aataattgag gaaatagcta caggaaatta gaggaaatta caggaattac aggaaattag       360
     gaaattgtta caggaattaa taatataaat aagaagtagg gcgaaaggat aaagggtgaa       420
     taaagggttg agaaacgcga ggaaaacacg gttatgcgtc gccgtcaagg aaatgtatcg       480
     cttatgtatc gctaaggcag catgtacgat aaaagggggc tacggggagg tagccctaaa       540
     taaataagct ttctcacaac cggaacaaaa agccttttta tttcggttgg ccgcggataa       600
     attagtttag tttctacctt ctctcaccct cggtcggagt ttgatactcc ggtccgagag       660
     ctcaacacgg gtttatcgcc ctgctgtgct gggaaca                                697
//
ID   BEL-39_AA-I repbase;    DNA;    INV; 6721 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_AA_;
KW   BEL-39_AA-LTR; BEL-39_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6721
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 869-869 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5677-6258] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1312..6654
FT                 /product="BEL-39_AA-I_1p"
FT                 /translation="MTDKKIKEKVKKRERIVDTVKRHASFLGIYDPSIHRG
FT                 EVQSRLDKIEVKFDEFEEIQEEIAELDAEGKFEEDCSKAADEFEKLYYSLR
FT                 AALLAKIPSEDPPADLNNSIGRAGLALGAHTGVRLPQISLPEFNGDIRVWL
FT                 SFKSTYMSLIHESGELSDVQKFHYLKSALKGEAAKLIESLAITSDNYNIAW
FT                 DTVTKRYSNEYLLKKRHLQALMEYPKVEKESSSAIHALVDEFEQRLKILKQ
FT                 LGEKTEHWGAMIVHWMCSKLDMKTLQLWEDHAASTKDPTFAILVNFLEKRT
FT                 RVLEAVSSNVELQCSSQKSEVKRQKVVVHAATDSEQRSGLVCSCCGESHFL
FT                 GRCGKFNQMTLKEKLQFVNSKRLCSNCLKSGHWVRDCNSKFSCRDCGKKHN
FT                 SLIHPGFSPSSSGAGNSDHLAGKAEKKRNGTVATNVATNEEEAEQEIDDQE
FT                 AVGTYNVGTKVGKISNVFLSTVVLVVRDLHGGKQLARALLDNGSQANIMSE
FT                 RLCQMLNLKRRTANVPISGIGQSETRARFIVNTTVSSRIQDFSVGMEFLVL
FT                 QKVTSELPSAHIPVAHWNIPKDIQLADPNFNTSNRIDLLIGGEHFYRFLYE
FT                 REMKRIVLGPGLPMLINSVFGYIVTGKVSETHDYSVSCCLAATPGQLESDN
FT                 LEAQLRRFWEIESSEDRPAWSKEEQDSEDHFVKTFSRTEEGRYVVRLPKHI
FT                 NYGQMLGNSHAMALTRFRRLEKQLERNPDMRLQYNAFMQEYLNLGHMREVN
FT                 EEELSKEMMSDNSKKVCYLPHHAVLKETSTTTKVRVVFDGSASTDSGYSLN
FT                 DALLKGPVIQDELLSLLIRFRKHEVALVGDVEKMYRQVKVHPEDAGLQRIL
FT                 FRFSPEEPIRVFELSTVTYGLTPSSFLAIRALHQLAADEGVAYPEAAKAIV
FT                 HDFYVDDYIGGASSVDEAIRLQGDLDTLMKKGGFALRKWCSNRPEVLTGIP
FT                 ADQLGTNLSISFDISPEEKVKTLGITWEPGTDQLRFIYENVESEQTWTRRT
FT                 ILSSIAKLFDPLGLISPVVIVAKMLMQELASRKIAWDTPVPDDIRKKWTTF
FT                 YSELDKIAELRISRFAFASNWVDIQFHCFADASTVAYGACLYVRTTDQAGN
FT                 VRIELLASKSRVAPLQRLPIPRLELCAAKEAALLHSKVTKALSLGEVRSTF
FT                 WSDSTIVLHWLRAAPNTWQTFVANRVSAIQTSTHPHSWRHIAGKENPADLV
FT                 SRGMTINDFLHSQLWNEGPPWIRDDEDTWPYQVNGFNPPDDQLEIRKVVHQ
FT                 ATVAEPSTNDLFSLRSSLPPLLRIVAYCHRFAHNCRFPNDRRRGIVLTAEE
FT                 IQAAKMALTRLAQAERFSEEFKALQHQQPIHRKSKLNRLFPFLDSDGVLRV
FT                 GGRLRFSTIGYAAKHPAVLPSNHPFTDLVIRYFHYQNFHSGPQLTLSEIRQ
FT                 EFWPIHGRRAVNNVLRKCIRCFRSNPAPIQQPMGQLPAGRVRPGRPFLITG
FT                 VDYCGPFYLKPPRRNAAPPKVYIAVFVCFSTKSMHLEMASDLSTASFLSVL
FT                 RRFIGYRGVPAEIHSDNATNFSGARNELKALYDLLNNSISRTTISNELSQQ
FT                 GIQWKFIPPRAPNFGGLWEAAVRSVKTALKKEIGLQQLTYDNFLTLIVQIT
FT                 ATLNSRPLSPLSDDPTEFEALTPAHFLIGSSMKALPEPILISIPTNRLNHY
FT                 QQTQQMFQRYWQRWSKQYLTQLQVTTRNLPTNPMQVGSIVVLREDNLPPLC
FT                 WPLARIISLHPGSDGIVRVVTVKTATGVYKRAVNRICPLPTEDVNRRTTRA
FT                 SGLPAISDRN"
XX
SQ   Sequence 6721 BP; 1804 A; 1554 C; 1716 G; 1647 T; 0 other;
     tttttttggt gccgtgacca ggatcagcag ttggataagg ccattatact ccgtagtgta        60
     ttgttctggg gaagaatagg ccggccggaa gacatctatc gggcaacgga ttcactgttg       120
     tgaggttcct caacgagtgg agaactcact ctccccaacg atagcgtgga ttacttcttc       180
     cttcacacgt tgtacggccc atcggccact acaaagtcac gcgacgagtt gtaattgttg       240
     cagtcagaag cagtaataaa ttaaatacaa ggcctatatt gcttaggcca cgggtgagtg       300
     gcattccaaa tatctctaac aatcacacag gtgcttttga gatttggttt tgtttcatgt       360
     tcgctggctt ctgtgactgc atgtgacgtc gcgcgacacg gagttgcatc gtcgatttat       420
     tactattgct gggaggattt ctgctacgcc cgtgctgcat acgacttcaa cagtatatct       480
     ggacgtgatt cgagctattt tttatctggc atcgttcttc ggttggagat ttagatattt       540
     gaaattcaag gcctattgtc gacaggcctc aggtgagtgc ctgtccaatt aaattatctc       600
     ttttgggtgg tgctatatgg tacgattatt gatccattct cggtacacgt gatcgttggc       660
     tacggttgga gaatcggtac gtgaacgtac ggctacacta ggcaacaaca ttttttcgca       720
     tcgccacgaa accgattgga ttggactcga cggacggatt gatacctctt ctgagatcat       780
     cgtagatttc atcgagctca actggtggaa gacgttacgc aacactttgc gtgcagaaag       840
     gcggaggaag tgtttacgtc gggacaatta gtacaagcga aggttggcat ctacgatcga       900
     tgaaggttag tggtatcgaa ccattttcta ttgctgggga gctggttata cttgaggcga       960
     tttattaaaa aaaatacaag gcctgtggta gacaggtacc agtggagttt cttgcaccgt      1020
     gaggaaatta gttgcaatac agtctacatt gctggatgca catttcggca ttttttggac      1080
     gagcctcaat tcgaagtacg aagacgatca tctcactact tgatattgta cgggggctgg      1140
     cggaagctgc atttaattaa atacaaggcc ttgttgagac aggcctcagg tgagtacctg      1200
     tccaacaatc tcacttggag aattgcagag cttcttggtt ggttttcttt ctcattcttg      1260
     atcgtcatcg ttcgtacttc gatttgctga gctggtagtg gttgtgggaa aatgactgat      1320
     aagaaaataa aggaaaaggt caaaaagcgg gagcgcattg tcgatactgt gaaacgacat      1380
     gcgtcatttc tggggattta tgatccaagt attcataggg gggaagttca gtcaaggctg      1440
     gataaaatag aggtaaagtt tgacgaattt gaggaaattc aggaagaaat cgctgagctg      1500
     gatgcggaag ggaagttcga ggaggattgc agcaaggccg ctgatgagtt cgagaaactg      1560
     tattacagtc tgcgagcagc cttgttggcc aaaataccat ccgaggaccc accggctgat      1620
     ttgaacaact cgattggaag agctggcctt gcattagggg cccacactgg agtacgtctg      1680
     ccgcagattt cactgccgga gttcaacggc gatatcaggg tatggttgtc gttcaaatca      1740
     acctacatgt cgctcattca cgagtccggg gagctaagcg atgttcagaa atttcactac      1800
     ctcaaatctg cactcaaggg agaagcagcc aagctcatcg aatcacttgc tatcaccagc      1860
     gacaactaca acatcgcttg ggatacggtt acgaagcggt actctaacga gtatcttttg      1920
     aagaagaggc atctgcaggc gctcatggag tatccgaagg tggagaagga gtcatcatct      1980
     gctattcatg ctctagtgga cgagtttgaa cagcgtttga agatcttgaa gcaactagga      2040
     gagaagaccg agcattgggg ggcaatgata gtgcactgga tgtgttccaa gctggatatg      2100
     aagactcttc agctgtggga agaccatgca gcttcaacaa aggatccgac gttcgcaatt      2160
     ctagtaaact ttttagagaa gcgtacgagg gtattggaag cggtttcatc gaacgttgag      2220
     ttgcaatgca gttcacaaaa gtcggaagtt aagcgtcaaa aggtggtcgt acatgctgca      2280
     actgatagtg agcagcggag cggtctggta tgcagctgtt gtggagaatc gcatttcttg      2340
     ggccggtgcg gaaagttcaa ccagatgacc ctgaaggaga agctacagtt cgtgaacagc      2400
     aaacggctgt gcagtaattg cctgaagtct ggccattggg tacgcgattg caattcgaag      2460
     ttcagctgtc gcgactgcgg aaagaagcac aattcgctga ttcatccagg attctcacca      2520
     agcagcagcg gtgctggaaa tagtgatcat cttgcgggta aagcggagaa gaaacggaac      2580
     ggcacggtgg caacaaacgt ggcgactaac gaggaggaag ccgaacaaga aatcgacgat      2640
     caagaagcgg ttggaacata caacgtaggg accaaggttg gcaaaatctc aaacgttttc      2700
     ctatctacgg tggtattagt tgttcgggac ctgcacggag ggaagcagct agcccgagct      2760
     ttgcttgata atgggtctca agcaaacatc atgagtgagc ggttgtgtca aatgctgaac      2820
     ttgaagcggc gcacagcgaa cgtgccgatt agtgggatcg gccaatcgga aactcgtgct      2880
     agatttatag ttaacactac agtcagctct aggatccagg acttctccgt aggaatggag      2940
     ttcctggtgc ttcagaaggt tacgtcggag ttgccatcag cacatatacc ggtagcgcac      3000
     tggaacattc cgaaggatat tcagttggcg gatccgaact tcaacaccag caatcggatt      3060
     gaccttttga ttggaggaga acacttctat cgtttcttgt acgaaaggga gatgaagaga      3120
     atcgtacttg gaccaggact accgatgttg atcaactcgg tattcggcta tatagttacg      3180
     gggaaagttt cggaaacaca tgactactcc gttagctgtt gcttggcagc cactccgggg      3240
     caactggaat cggacaattt ggaggctcaa ttacggaggt tttgggaaat cgagagtagc      3300
     gaggatcgac cagcttggtc gaaggaagaa caggacagtg aagaccattt cgtgaaaacg      3360
     ttcagccgaa cagaggaagg tcggtacgtc gtacgtttac cgaaacacat taactacggt      3420
     caaatgttgg gtaattctca tgcgatggcg ctaacaaggt tcaggaggct agaaaagcag      3480
     ctggagagga atccggatat gcgtctacaa tacaatgcat ttatgcaaga gtatctgaat      3540
     ctcggacata tgcgggaggt taacgaggag gagctctcga aggaaatgat gtcggataac      3600
     tcgaagaaag tctgctacct accgcatcac gcggtgctga aggaaaccag caccacaacg      3660
     aaggttcgtg ttgttttcga tggctcggcc agtacggaca gcgggtattc cctgaacgac      3720
     gctctactga aaggtccggt aattcaagat gagctcctca gtcttctaat acggtttcgg      3780
     aagcatgaag tggcgctagt tggcgatgtc gagaagatgt atcgacaggt aaaagtacac      3840
     ccggaagacg ccggattgca gcgcatcctt ttccgatttt ctcctgagga gcccataagg      3900
     gttttcgagt tatcaacggt aacttacggg ttgacacctt catcattctt ggcgatccgc      3960
     gccctacacc aacttgcagc agatgaagga gttgcatacc ccgaagcggc gaaagcgata      4020
     gttcacgatt tttacgtgga tgattatatc ggtggagcat ccagcgtaga cgaagctatc      4080
     cggcttcaag gagaccttga caccctaatg aagaagggtg gatttgcgtt acgcaaatgg      4140
     tgttccaatc ggccagaagt tctgactggc atcccagccg atcaacttgg aacaaatcta      4200
     tcgatttcat tcgatataag cccggaagaa aaggtgaaaa cactgggaat cacctgggaa      4260
     cccgggacag atcaactgcg attcatttac gaaaacgtag aaagcgagca aacttggaca      4320
     cgaaggacaa ttctgtcttc tattgctaaa ctgttcgatc ccctgggatt aatatctcca      4380
     gtggttattg tagcaaaaat gcttatgcaa gagctcgcgt cacgaaaaat agcatgggat      4440
     acacctgttc ccgatgacat aaggaaaaaa tggacgacgt tctactcaga actggacaaa      4500
     attgcggaac tacgaattag ccgatttgct ttcgcgtcca actgggtaga tatccagttc      4560
     cattgttttg ctgatgcttc cacagtagcg tacggagctt gcctatacgt acgcacaaca      4620
     gaccaagctg gaaacgtgcg aattgagcta ctcgcttcaa agtctcgtgt cgcaccgctc      4680
     cagagactac caattccacg acttgaactt tgtgcagcca aagaagctgc actgctacac      4740
     tcgaaggtga cgaaagcact atcgttaggc gaagttcgtt ctacgttctg gtccgatagt      4800
     acgattgtgc tccactggct gcgagctgct ccaaatacct ggcagacatt cgtagccaac      4860
     agagtatcag cgattcaaac ctccacgcac ccacattctt ggcgacacat agcaggaaag      4920
     gagaatccag cggacctagt atcgcgtgga atgaccatca acgactttct gcatagtcag      4980
     ctgtggaatg aaggacctcc atggattcgc gatgatgagg atacgtggcc ctatcaagtc      5040
     aatggattca atcctcctga tgatcagttg gagattcgta aggttgttca ccaggctaca      5100
     gtcgctgaac catctactaa cgatttattc agcttacgtt cttcgctacc ccctctactt      5160
     cggatcgtcg cttactgcca tcggtttgcc cataattgcc ggtttccgaa cgacagaagg      5220
     cgcggcatcg tattgactgc tgaagaaata caagctgcaa aaatggcact gactcgatta      5280
     gcacaagctg agcggttttc cgaagaattc aaagctctcc agcatcaaca gccgattcac      5340
     cgcaaatcta aactgaatag actgttcccg tttttggaca gcgatggagt cctcagagtt      5400
     ggcggacgtc tacgcttctc aaccatagga tacgcagcca agcatcctgc ggtattgccg      5460
     agtaatcacc cattcacgga tttagttatc cggtacttcc actatcagaa cttccacagt      5520
     ggtcctcaac tcacgttgtc cgagatacgg caggaatttt ggcccataca tggccgacgt      5580
     gccgtcaaca acgttctccg caaatgcatc agatgcttcc gcagcaatcc agcgcctatt      5640
     cagcagccca tgggacagct acctgccggt cgcgtgcgcc caggacgccc attcctgata      5700
     accggtgttg attattgcgg gccgttttac ctaaagccac cacgccgaaa tgctgcgccg      5760
     ccgaaggtgt atattgcggt gtttgtctgc ttctctacaa agtcgatgca cctcgagatg      5820
     gccagcgact tatccactgc ctcattcctt tctgttttgc gacggttcat aggctaccgt      5880
     ggtgttccgg ctgaaataca ttcagacaat gccacaaatt tctctggagc acgcaatgag      5940
     ttgaaggcgt tgtacgacct actgaacaat tcgattagcc gcaccaccat cagcaacgag      6000
     ttgtctcagc aaggcatcca atggaagttt attcctccgc gcgctcccaa ctttggtgga      6060
     ttgtgggagg ccgccgtacg ctccgtaaag accgccttga agaaagagat cggccttcaa      6120
     caacttacct acgacaactt cctcacatta atagttcaga tcaccgctac tctgaactca      6180
     agacctctat cccccctatc tgatgacccc actgaatttg aagcgcttac accagcgcat      6240
     tttttgattg ggtcatcaat gaaagctctc cctgagccca tcctaatctc cattcccaca      6300
     aaccgcctta accactacca gcaaacccag caaatgttcc agcgctattg gcaacggtgg      6360
     agcaagcagt atctaacaca gctgcaagtg acaacgagga acctacccac aaaccctatg      6420
     caagttggca gcatcgtcgt gctacgggag gacaaccttc cgcccctttg ttggccgctg      6480
     gcacgaatca tcagcctgca cccgggctct gacggaatcg tgcgagtagt gacggtgaag      6540
     acagcgactg gagtctacaa gcgggcagtt aatcgcatat gtccactacc taccgaagat      6600
     gtgaaccgac ggaccacgag agcttcagga ttgccagcga tttcggatcg taactgaata      6660
     tgaaccaaat tgttgaattc atacaattag cttattgaag ccagttcaag agggccggta      6720
     a                                                                      6721
//
ID   BEL-39_AA-LTR repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_AA_;
KW   BEL-39_AA-I; BEL-39_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-662
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 870-870 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 662 BP; 243 A; 110 C; 126 G; 183 T; 0 other;
     tgttaacaat tagattagta tggagaaaca tttgaattgt tatgaattta aaaacctaaa        60
     atcagatatt acaaaaagtg tattaaaact taaagctagg attaaatagg ttaaaaaaat       120
     taaactgtta tacacatcac agacacaaaa cactgaattt ctgtattacc acacatgcaa       180
     tattgataac acagataaca ttgatagcac acaacacaga tgtagaagcc gatgatttat       240
     atacaagact gtatagggac aatagcttac cggcaaaaca aacggcagtt agtagccaat       300
     cgatcgtcag gcaataaaga acatttttcc ttaccgtcgc gtattcaaaa taaaattata       360
     ggttctagtt tcattactaa aaattaaagt gtagtttttt ttgcctaaat caaagtgcgt       420
     gaaattattc ctgaagaaaa cgactttcaa cggtgattag tgcaaaaagg tgtcacgtgt       480
     cgctattccc gtgcatgcta ttcgggttaa ggagagtgtg ctcgacagtg gtgaagaaat       540
     tgcacttaaa aagaaagcaa caaactgtgg ttcggatcgt ggattgcacg gaatcgttca       600
     gatccttatt tagagctttg tggtgggcct tcccaaccca cgaaccgtgg agaataagaa       660
     ca                                                                      662
//
ID   BEL-39_AnFu-I repbase;    DNA;    INV; 6663 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6663
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 687-687 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1469..6604
FT                 /product="BEL-39_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MANTKEKITKFEEEVGSDVCEMRKEIERLKREYKDLS
FT                 EKHEETKRESQEKQTKLVTQLAEKEAESKKLRKEKGQKRELQDGSATVASA
FT                 STSNSSPASELLIKGLVDALNERSKRDSLMELPEFNGDFKKWNHFKSVFYK
FT                 TSEEAKFSDLENLNRLQKALKGDALECVSGLMLDAQNIEGILQRLEKEFGT
FT                 PDLIYSALLKELLAVENPTMQKPKSFITFMHALNNLVINMNTIGEPEYLND
FT                 QRLLKDLENKIPTNLKHKWYNHILADNENYGRSKLRTLEDFAKWLKPTENL
FT                 AIMLTADVANDVVNSQSHQHNQQLGHRNFRAQPRQQFQANIQSQPRRRMGC
FT                 LICGQNHRTTECFQFQNMSVERRWETVRRLRICTNCCNQSNHDAQNCFLPP
FT                 QCRQYGCRARHHTLLHRATPTGLRQVENVNTHHGSDLPELYFQIIPVTLRH
FT                 KNREVDTFAFMDTGSSASLIHRELKEELQVNGSPRPFSLAWTNGSIQDEPE
FT                 SETISILVKDQDGKFINLNGLRTVESMVLPKQTVDGKELRRKYRHLRGINL
FT                 QSYRDGAPKLIIGLPHAHLMCALQTRTGRAGEPIAIRTHLGWVLLGSNDLN
FT                 SKQAKLFSLIEAKNANKDIANMMRNYFSTEDFGVKLGCKIPQPKDEERAKQ
FT                 IMEKTLKKTETGYEIGLLWKTEDVSLPESYGQALRRLQSLERKLARDEMLK
FT                 KWYHEEIDAYCKKGYARPIGQSEVNSDEFNPKINYIPHFAVVNYNKPVPKP
FT                 RLVFDAAAKNNGISLNSQLLSGPDAVASLFGILIRFREGRIGISGDIKEMF
FT                 HQVKIRQDDRCAQRFLYRREPFMKPEIYEMRVMTFGATCSPACAQYVKNEN
FT                 ASLFQNQYPSAVVAIIHNHYVDDYLDSFDNEDTAVNRTRQVIEIHDKANFF
FT                 IRNFISNSNEVLKSLPPGRVSENTLIKIGEKDANFDKILGQWWDREEDALK
FT                 YVPKGLYELGGEVTKRMLLSNIMKIYDPLGLIANYIIESKILMQDIWKQGL
FT                 DWDAKLPRNLADRWQEWVERMKGIENIKIPRCYSVAEDVAKRELHVFVDAS
FT                 EKAFAAVVYMRTIHQQGIDICIVAAKSRVAPTKPLSIPRLELQAAVLGARL
FT                 AETLRREMRIDINETCYWTDSKTVLAWISSEPRNYKQFVALRVGEILNRSG
FT                 VNQWHWIGTKDNPADEATKVIKGPSIWFEGPSFLKASYIQYDGFEPTTLEE
FT                 IRPVHTINAVNRLDWEVINVKWSSNWLKLRRAIAICLKYLEWLKAKVNNNS
FT                 FSPIISKGNLDKAEHLLFKKAQWEGFSDEMAALAAGHPISNRSDIKNLCPV
FT                 LDENNVMRAESRLTRAQFLGEDTKRPIILPKHNYITTLIIRYYHEKYLHRK
FT                 TETVIAAIRQRFWVVDLRATLKRVVTYCQKCKNDRAKPQPPMMAPLPACRT
FT                 TPFVKPFTHTGADYFGPLTVYIGRRSEKRWCALFTCLSTRAVHLELASDLS
FT                 ANSFLVCLRAMQHRRGKIAHLYCDNGTNFVGACREITKLQEKCATEGIYFH
FT                 FNPPAAPHFGGSWERMVQEVKSLLSLCNEPYQEAVLRSALTEIEFMINNRP
FT                 LTHIPLDHEDDEPLTPNHFLIGCSGEAEPTQCEISEAEALKTHWKKSQWVA
FT                 QKYWSRWIKEFLPRLVTREKWLKPVKELRIGDIVAFPDEQTRGRWRKGIIT
FT                 QVQEGKDKQVRSVTIRVGSLFIRRPAVKVARLEVRAEEEIGRT"
XX
SQ   Sequence 6663 BP; 2217 A; 1343 C; 1710 G; 1392 T; 1 other;
     ttggtggctc cagagaggaa ggtagtactt gctaacgttc caaggcacga gaaagtttcc        60
     cgccacgagg taaccggagg accccattcc cggtcgaagg aaggaagacg ccaagcgccg       120
     aagagaaccg gaggactcca ttcccggttg gamggaggac gagagagggc cacccgcctc       180
     tagcagaccg gaggaccgca ttcccggctg aaggaaggac gagagtaggc cacccgcctc       240
     gagcagaccg gaggacgttc attcccggtc gaaggaagga aggaagacgc taagtggtga       300
     agagaaccgg aggaccccat tcccggttgg aaggaggacg agagagggcc acccgcctct       360
     agcagaccgg aggaccgcat tcccggctga aggaaggacg agagtaggcc acccgcctcg       420
     agcagaccgg aggacgttca ttcccggtcg aaggaaggaa ggagaggggc aaccgccctg       480
     tggaaaccgg aggacgttat tcccggtcag cgaaaggaag gagaggggca accgccctgt       540
     ggaaaccgga ggacgttatt cccggtcagc gaaaggaagg agaggggcaa ccgccctgtg       600
     gaaaccggag gacgttattc ccggtcagcg aaaggaagga gaggggcaac cgccctgtgg       660
     aaaccggagg acgttattcc cggtcagcga aaggaaggag aggggcaacc gccctgtgga       720
     aaccggagga cgttattccc ggtcagcgaa aggaaggaga ggggcaaccg ccctgtggaa       780
     accggaggac gttattcccg gtcagcgaaa ggaaggagag gggcaaccgc tctgtggaaa       840
     ccggaggacg ttattcccgg tcagcgaaag gaaggagagg ggcaaccgcc ctgtggaaac       900
     cggaggacgt tattcccggt cagcgaaggg aaggagaggg gccaccgccc tgtgaagacc       960
     ggaggacgct cattcccggt cggaaggtat agtgatagtg aagtgcaacg gttccagcgg      1020
     cagcagcaac agtggtgcct aaaacggctt aaaaaaaaaa aaaaaatagt gcgacggttc      1080
     cagcggcagc agcaacagtg gtgcctaaaa cggcttaaga aaaaaaaaaa aaaaatagtg      1140
     cgacggttcc agcggcagca gcaacagtgg tgcctaaaac ggcttaaaaa aaaaaaaaaa      1200
     aaaaatagtg cgacggttcc agcggcagca gtaacagtgg ttaagcctaa accggcttaa      1260
     aagagtgcat cagcagcgac ggcagcagca gcagcagcaa ccggagcggt agcagcggca      1320
     gcagcaacga cagcagcggt ggcagcagca gcagcaaccg gagcggtagc agcggcagca      1380
     gcagcatcag cagccgaagc agtagcagca actgcagtag tagcagcaca acaagaagcg      1440
     acgaacccgc aaacaaaccg tgagtaaaat ggcaaacact aaagagaaaa ttaccaaatt      1500
     tgaggaggaa gtagggagtg atgtgtgcga aatgagaaaa gaaatagaga ggttgaaaag      1560
     ggaatataag gacttatccg aaaaacatga agaaacgaaa cgcgaatcgc aagaaaaaca      1620
     gaccaaatta gtcacacaat tagcggaaaa agaggcagaa tctaagaaat tgcgcaagga      1680
     aaagggacag aaacgtgaat tgcaagatgg aagtgctaca gtcgcaagcg catcgacaag      1740
     caactcaagc cctgcttccg aattgctcat aaagggattg gtcgatgctt taaacgagcg      1800
     gtctaaaaga gattccttaa tggagcttcc tgaatttaat ggtgatttta agaaatggaa      1860
     ccatttcaaa tcagtgtttt ataaaacaag tgaagaggct aaattttcag atttggaaaa      1920
     tctaaatcgt ctgcaaaagg ctctgaaggg agatgccctg gaatgcgtga gtggtttgat      1980
     gctcgatgcg caaaacatcg aaggaatttt acagcgatta gagaaggaat ttggtacgcc      2040
     tgatttgata tacagtgcgt tattaaaaga attgctagca gtagagaacc caacgatgca      2100
     gaagccaaaa agttttataa cgtttatgca tgcgttaaac aacctggtca taaacatgaa      2160
     cactatagga gagccagaat atttaaacga ccaacgtctt ttaaaggact tggaaaataa      2220
     gattcccact aatttaaaac acaagtggta caatcatatc ttggcagaca acgagaatta      2280
     tggtagaagc aagcttagga ctctcgagga ttttgctaag tggcttaagc ccaccgaaaa      2340
     tttagctatt atgctaacag cggatgttgc taatgatgtt gtgaattcac aatcgcatca      2400
     gcacaaccaa cagttaggtc ataggaattt tcgtgctcaa ccacgacaac agttccaagc      2460
     gaatatccaa tcgcaaccaa ggcgtagaat gggttgcttg atttgtggcc aaaatcatag      2520
     gacgacagaa tgttttcaat ttcaaaacat gtcggtcgaa cgaagatggg aaacggttag      2580
     gcggttgcgc atttgcacaa actgttgcaa ccagtcgaat cacgacgccc aaaattgttt      2640
     tctgccacca caatgtcggc aatacggatg tagagcgaga catcataccc tattacatag      2700
     agcaactcct actggcttaa gacaggttga gaatgttaat actcaccacg gttctgattt      2760
     gcctgagtta tattttcaaa tcatcccagt aacgcttcgt cataagaata gggaggtcga      2820
     tacattcgcg ttcatggata cgggttcatc tgcgagctta atacatcgtg agctcaaaga      2880
     agagttgcag gtaaatggat ctccacgacc attttcgcta gcttggacta acggatcaat      2940
     acaagatgag ccggaaagtg aaaccatctc gatcctagtt aaggatcagg atgggaaatt      3000
     tataaacctt aatggattaa ggacagtaga atccatggtg ctgccaaaac aaacggttga      3060
     cggaaaggaa ttaagaagaa aatatcgcca tttgagaggc atcaatttac aaagctatcg      3120
     tgatggagct ccgaagctaa ttatcggatt gccacatgcg catctaatgt gcgcattgca      3180
     aaccagaact ggccgagcag gcgaaccgat agcaattcga acccacttgg gatgggtatt      3240
     gttaggatca aatgatctta atagcaagca agcaaaactc ttttctctaa tcgaagcaaa      3300
     aaatgctaac aaggatatag cgaacatgat gagaaattac ttctcaacgg aagattttgg      3360
     tgtcaaattg ggttgtaaga taccgcagcc caaggacgaa gaaagggcga aacaaataat      3420
     ggagaaaacg ttgaagaaaa ctgaaaccgg ttacgagata gggctcctgt ggaaaacgga      3480
     agacgtcagt ctacccgaaa gctatggcca agctttaagg cgactccaaa gcctagaaag      3540
     aaaattggca cgagatgaaa tgctaaaaaa atggtaccat gaggagatag acgcatactg      3600
     caaaaagggt tacgcgcgtc caataggtca gagtgaggta aatagcgatg agtttaatcc      3660
     caagatcaat tatataccac actttgctgt agtaaactac aacaaacccg tgcctaaacc      3720
     gaggttggtt ttcgatgcag ccgcaaaaaa taatggaata tccttaaact cgcaattatt      3780
     gtcagggcca gatgcagtcg catctctatt cggcattcta atacgattca gagagggacg      3840
     cattggtata tcaggtgaca tcaaggagat gtttcaccaa gtgaaaatcc ggcaagatga      3900
     tcgctgcgcg caacgttttt tgtacagacg cgagccgttc atgaaaccgg aaatttatga      3960
     aatgcgggtt atgacctttg gagcgacctg ttccccagca tgcgcccaat acgtcaaaaa      4020
     tgaaaatgca tcgctctttc aaaatcagta cccttcagcg gtagtcgcaa tcattcacaa      4080
     tcactacgtg gatgactatt tagacagttt cgataatgag gataccgcgg taaacagaac      4140
     ccgacaggta attgaaatcc acgataaagc taattttttc attagaaact tcatatcgaa      4200
     ttcaaatgaa gtgttgaaaa gtctgccacc gggaagagtg agcgagaaca cattgatcaa      4260
     aataggcgag aaagatgcaa atttcgacaa aatacttggc caatggtggg atagggaaga      4320
     agatgcatta aaatacgtgc cgaaaggatt atatgaatta ggaggagaag ttacaaaaag      4380
     gatgttgctt tctaacataa tgaaaattta tgatccccta ggacttattg cgaattacat      4440
     aatagagtcg aagattttga tgcaggatat ttggaagcaa gggctcgatt gggatgccaa      4500
     actacccaga aatttagcag accgatggca ggagtgggta gaaaggatga agggtataga      4560
     gaacataaaa attccgcgtt gctattcagt agcggaagat gttgcaaaaa gagaattgca      4620
     cgttttcgta gacgcatcag aaaaggcgtt cgcggcggtt gtctacatgc gcactattca      4680
     tcaacaagga atcgatatct gcattgttgc agcaaaatca cgcgttgctc ctactaaacc      4740
     gctatccata ccgcgtttag agttgcaagc agctgtgtta ggagccagat tagctgaaac      4800
     gcttagaaga gaaatgagga tcgacataaa cgagacgtgt tattggaccg actcgaaaac      4860
     agttttagca tggatcagtt cagagccaag aaactacaaa cagtttgttg cgttaagagt      4920
     aggagaaatt ctcaatcgat ctggtgtaaa tcaatggcat tggataggaa cgaaagataa      4980
     cccagccgat gaggcaacaa aggtaataaa gggaccctca atttggttcg aaggaccttc      5040
     atttttaaag gcgtcttata ttcaatatga tggatttgaa ccgacgacgc ttgaagaaat      5100
     tcgaccggtg cacactatta atgcagtgaa ccgactagat tgggaagtaa tcaatgtaaa      5160
     atggtcttca aattggttga aacttaggcg cgcgatagct atttgcctaa aatatcttga      5220
     atggttgaaa gcaaaggtta ataacaactc attctcacca atcattagta agggaaattt      5280
     agataaagca gagcatcttt tgtttaaaaa agcacagtgg gaggggttca gtgacgaaat      5340
     ggcagcctta gctgcaggac atccaataag caacaggagc gacataaaaa acctctgccc      5400
     ggtcctggac gaaaataacg taatgagagc cgaaagccga ttaaccagag cgcaattttt      5460
     gggggaagat actaaaagac cgatcatact cccaaagcat aactatatca ctacactaat      5520
     aatacgttac tatcacgaaa aatacttaca cagaaagaca gagacggtta tagctgcaat      5580
     cagacagcgc ttctgggtag ttgatttaag agcaacgctc aaaagagtcg tgacatattg      5640
     tcaaaaatgc aagaacgata gagccaaacc acaaccgcca atgatggcac ctttgcctgc      5700
     atgtagaacg acaccattcg ttaaaccgtt tacccatacg ggtgcagatt attttggccc      5760
     gcttactgtt tacattggaa ggcgatccga aaaaagatgg tgcgctctat ttacctgcct      5820
     ctctactaga gcagtgcact tggagttggc aagcgatctt agcgcgaatt ctttccttgt      5880
     atgtctgagg gcaatgcaac acagacgcgg aaagatcgct catctatatt gtgacaatgg      5940
     cacgaatttc gtaggtgcgt gccgcgaaat aacaaagttg caagaaaaat gcgctacgga      6000
     gggaatatat tttcatttca acccaccggc ggcgccacac tttggaggat cgtgggagag      6060
     aatggtacaa gaggtaaaaa gccttctctc actatgcaac gaaccctatc aagaagcagt      6120
     acttagaagc gcgctaactg agattgaatt catgatcaat aataggcctc ttacgcatat      6180
     tcctttggac cacgaagacg atgagcctct cacaccaaac cactttctaa taggctgttc      6240
     tggagaagca gaaccaactc agtgtgagat ttcggaagct gaagctttaa agacacattg      6300
     gaagaaatcc caatgggttg cacaaaaata ctggtctagg tggataaaag aatttctacc      6360
     tcgattggta acgcgagaga aatggttaaa accagtgaaa gaattgcgca taggcgacat      6420
     agtagcattt ccagatgagc agactcgcgg aaggtggcgt aaggggataa ttacgcaagt      6480
     gcaagaagga aaggataaac aggttcgatc cgtaacgata agagtaggaa gtttatttat      6540
     tagaagacca gcggtaaagg tcgcacggtt ggaggttcgc gccgaagaag aaataggtag      6600
     gacataattc cgtcagctta ttattgtttg taacacctct acgaggaatt acgggggaga      6660
     gga                                                                    6663
//
ID   BEL-39_AnFu-LTR repbase;    DNA;    INV; 697 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-697
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 741-741 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 697 BP; 217 A; 134 C; 180 G; 164 T; 2 other;
     tgtcgctgac ggaaattatg tcctttttag gaaccgctgt ccgcgctcaa aaaaggtccc        60
     tagcttagga gaatagtagc aggagagcgg acttagccgc tctcaacgta aagataagct       120
     aggagactaa gcttacctct ctcgcatcgc ttcaccgtga agcgatgagt gagagggaag       180
     ttaagcgtct ctgtctgtct cgcttgctcc tgcaggcgca gacagataat gcaaggacaa       240
     tgcggggatc ggcgcgaaaa atcctcccca aaattattaa atttattagg caaataggga       300
     aataattgag gaaatagcta caggaaatta gaggaaatta caggaattac aggaaattag       360
     gaaattgtta caggaattaa taatataaat aagaagtagg gcgaaaggat aaagggtgaa       420
     taaagggttg agaaacgcga ggaaaacacg gttatgcgtc gccgtcaagg aaatgtatcg       480
     mttatgtatc gctaaggcag catgtacgat aaaagggggc tacggggagg tagccctaaa       540
     taaakaagct ttctcacaac cggaacaaaa agccttttta tttcggttgg ccgcggataa       600
     attagtttag tttctacctt ctctcaccct cggtcggagt ttgatactcc ggtccgagag       660
     ctcaacacgg gtttatcgcc ctgctgtgct gggaaca                                697
//
ID   BEL-39_CQ-I repbase;    DNA;    INV; 4033 BP.
XX
AC   AAWU01047176;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_CQ_;
KW   BEL-39_CQ-LTR; BEL-39_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4033
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 231-231 (2011).
XX
DR   Genome; AAWU01047176; Positions    4833    8865.
XX
CC   'ATCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1066..3711
FT                 /product="BEL-39_CQ-I_1p"
FT                 /translation="MDFKFAENKKGSCRQCDSSDDVEEFMVSCDSCDRRFH
FT                 IKCVGLARTPRSKDHWKCDKCLAIQEMLDKQDALIKSLEEKCMKYFGTQQV
FT                 AQNSETNQNLQVKALEAIIDKINSINISQTSSNSLVMRQSLMDLPEFDGSY
FT                 KIWPRFKQAFYETTRQGNFSDFENINRLNNCLKGEALSRVNSLLINSSNLN
FT                 EIMIKLEDQFGSVERVYSGLLNDVLALRNPKFENPQSMIDFISGIGDLVIN
FT                 MECLNHPEYLNDQRLVRDLANKLPASLHQKWLMSLNEEKMLATIKNPYTAP
FT                 TFKTLYEWLKPQEKLASMLLAERGANKESSVETIDRVNYHGIHQLKCYLCD
FT                 QNHKLTECDEFKKISLVERRKFVAEKKLCFSCCRANHLAKHCRFAEPCNTE
FT                 GCKSKHNRLLHLKIPEKKITVASKPTKDDLKKVNCHVRDSHQVYYPIIPVT
FT                 LMNGENSFETFAFFDSGSSVSLIDKNVVNKLKVTGRDKPLTLAWTNGEIKE
FT                 NNRSKSVQLNVKGPNGKLFQLNDLRTIKGLSLPHQSVDIARLKARFSYLEN
FT                 SKLESYEKAVPTILLGLPHAFLFKGNQELSGRFNEPIARKTKLGWVLFGSS
FT                 QIEDNKKKHVFIIREVQKEDFSKNLVSKDTNENCPKGGTIKVDQSSERKVL
FT                 TTEIDNKLNICNVQTKTFDAISSQACVQVTKNKEVIIFIEDSSNLVEQNWN
FT                 NQRNDYLVYFYNSKLATKVARYRVVMCRKANKEFGNSNSNLKLMKRNFPLK
FT                 EMELYNTGNILCKFRKKTNCKLKNKVTANSDEINNLTKRQNLSHAMDVYDR
FT                 QSISFKSLMKNLWKSKYSWDKCIPEIIKLIPTNGFNQMIVNVNSNVNLIKI
FT                 VSIDNLEQQAHDLETTNEVQMCKLIKQRV"
XX
SQ   Sequence 4033 BP; 1499 A; 610 C; 819 G; 1105 T; 0 other;
     tggtggctcc agagaggaag ctggagagtg tctgttgaaa tcagacactt tggatccccg        60
     gacttccaac tagttgaaat ctagttgtga ttgtgagtat aagcgtgtcc gacgctatag       120
     agcggactag tgaaaagtgt tcttgagcag tcttaggctc agagaaaatt gtggacgaag       180
     tgtcgtcgaa gtgattcctg aactgtgtta gagttcagat gaacttagtg tcgagaaagc       240
     tcgtcagtga aatcctgtgg acttattcgc agaagaaatc ttgagcaaga actcagatgt       300
     tttgagaaga tgtaagatct ctcgtctggc agtaaacgtg gaaaaaaaaa aaaaaattta       360
     attcgtacgt tgatcactgt tcaaattgtg tgtgagcctg caaactaaat cccagaagaa       420
     acctgtatac gtgagcctgg aaattttatc cagaagaaaa ttttgtgtga gcctggacgt       480
     tacaaccaga agaaatttgt gaagtaagcc tggtccttga aaaccagaag aacagtttta       540
     tcggaaatca gtgttaccga agttatccgt gttatattag cctaggtgaa gacctagaag       600
     aactaaaaat tggcagaaga tttggtggat aacggatctg ccagtggaag tcgcacacaa       660
     acgtggactt agcccgacgc gggaattgtt cgtttaacgt gaacaaagtt tttgaatcct       720
     ggaagaattt ctagatgaac atttggacgc agtaaattgg cgtcaaaagt tagttcgtgt       780
     gtgcacagca aaaggtgttg tgagtgatcc tgaaattcaa agatccagat gaaatgttaa       840
     aaggaagaag cgtctccggt gcttaaatcg gaaacagtgc aattaaaaaa aaaaaagtat       900
     cgtgcaataa gaagcagctt aatagagtgg atcatcgagc gttgaaaagg aatcaacgac       960
     gagtacatca acaagcgacg tgtccaacca gcaacatccc atcgagcatc aagaaagagc      1020
     agcaacacat cgatcatctg aaattgtaag gtattcgaag gcaaaatgga tttcaagttt      1080
     gctgaaaaca agaagggtag ttgccgtcag tgtgatagtt cagatgatgt cgaggaattt      1140
     atggtttctt gcgacagttg tgatcgtaga tttcacataa agtgtgtagg attagctcgt      1200
     actcctaggt caaaggacca ttggaagtgt gataaatgtt tagctattca ggaaatgtta      1260
     gataaacaag atgctcttat taaatctctt gaagagaagt gtatgaaata ttttggaaca      1320
     caacaagttg cacaaaattc agaaacaaat caaaatttgc aagttaaagc acttgaagcg      1380
     attattgaca aaatcaatag cattaacatc tctcaaactt cttcaaacag tttagtgatg      1440
     cggcaatctc taatggattt gccagaattt gacgggtctt acaaaatctg gcccaggttc      1500
     aaacaagcct tttacgagac tactcgtcaa ggtaattttt ctgattttga aaatattaat      1560
     cgattaaata attgtctcaa aggtgaggca ttaagcagag ttaattcgtt actcataaat      1620
     tcaagtaatc tgaacgaaat aatgattaaa ttagaagacc agtttggcag tgtcgaacga      1680
     gtctactctg ggttgttaaa cgatgttttg gcattgcgta acccaaagtt cgagaatcct      1740
     cagtccatga tagattttat atctggaatt ggagatttag taatcaatat ggagtgcttg      1800
     aatcaccctg aatacttgaa tgaccagagg ctagttcgtg atcttgcgaa caagctacca      1860
     gcttcactac accaaaaatg gctgatgagt ttgaatgagg agaaaatgtt ggcgactata      1920
     aaaaacccat ataccgctcc tacatttaaa acactttatg agtggttaaa accacaagaa      1980
     aaattagcta gtatgctgtt agccgaaaga ggagctaaca aagaaagttc tgttgaaaca      2040
     atagatagag ttaattatca tggaatacat cagttgaagt gttatttgtg tgatcaaaat      2100
     cacaagttaa ctgaatgcga tgaattcaag aaaatatctc ttgttgaaag gagaaaattt      2160
     gtagcagaaa agaaattatg cttttcatgt tgtcgcgcaa atcatttggc aaaacattgt      2220
     agatttgcag aaccttgcaa caccgaaggt tgcaaaagta aacataatcg attacttcat      2280
     ttaaaaattc ctgaaaagaa aataaccgta gcttcaaaac ctacaaaaga tgatttaaaa      2340
     aaggtgaatt gtcacgtaag ggatagccat caagtttact atccaataat accagtaact      2400
     ttgatgaatg gtgagaatag tttcgagaca tttgcattct ttgattcagg ctcctcggtc      2460
     agtctcattg ataaaaatgt tgttaataag ctcaaagtta caggaagaga taaaccatta      2520
     acattggctt ggaccaatgg tgaaattaaa gaaaataaca gaagtaaatc tgttcaattg      2580
     aatgtcaaag gtcccaatgg aaaattgttc caattaaatg acctgcgaac cattaaaggt      2640
     ttatcgctcc cacatcaatc tgtggacatt gcacgtctca aggcaagatt ttcttatctt      2700
     gagaatagta agttggaatc ttatgaaaaa gcagtgccaa caatattact tggattacca      2760
     catgcatttt tgttcaaggg taatcaagaa ctatcaggaa ggttcaatga accaattgca      2820
     agaaaaacca aattaggttg ggtcttattt ggaagtagtc agattgaaga taataaaaag      2880
     aaacatgtgt tcataattcg agaagtccaa aaagaagact tcagtaagaa tttggtatcc      2940
     aaagatacaa atgaaaattg tcctaaaggt ggaacaataa aagttgatca aagctctgaa      3000
     agaaaagttt tgacaacaga aattgataac aaattaaata tttgtaatgt gcaaacaaaa      3060
     acatttgacg caatcagctc acaagcttgc gtacaagtta cgaaaaataa agaagtcata      3120
     atattcattg aagatagttc taacttagtg gaacagaatt ggaataatca acgtaatgat      3180
     tatttagttt acttctacaa ttcgaaactt gcaacaaagg ttgcgagata cagagttgtt      3240
     atgtgtcgca aagcaaacaa agaatttgga aattcaaatt ccaatttaaa actaatgaag      3300
     cgaaatttcc cattgaagga aatggaattg tacaacacag gtaatatact ctgcaagttt      3360
     aggaagaaaa ctaattgcaa gttgaaaaat aaagtaaccg caaatagcga cgaaatcaat      3420
     aatttaacaa agagacaaaa cttatctcat gctatggacg tttatgatcg tcaatcgatt      3480
     tcattcaaaa gtttgatgaa aaacttatgg aaatcgaaat atagttggga taaatgcatt      3540
     ccagaaataa taaaattgat accgacaaac ggtttcaacc aaatgatcgt aaatgtaaat      3600
     tcaaatgtga atttaattaa aattgtttca attgataatt tagagcaaca ggctcatgat      3660
     ttggaaacaa caaatgaagt gcaaatgtgc aagttaatca aacaaagggt ttgactagaa      3720
     gaatgaatga aacaaactta gacgcaatta gaagactaat tggcaagctg aaactgaaat      3780
     tttgaagtaa ctttgtatta ggatcatatg agcatgtcga caaattaata cgaagcattg      3840
     atgttttcaa tggagaacaa ttacataaat agtaacacat tattagaaac gaacaagcat      3900
     atgatacaga taaagatcat ttttatgaaa ataaagtaag gcataaatta caaaaacaaa      3960
     ataagactca gaaatttact agcgtagaat cgagtttgtt tggtaaatct aggacgattt      4020
     acgggtcccg gta                                                         4033
//
ID   BEL-39_CQ-LTR repbase;    DNA;    INV; 821 BP.
XX
AC   AAWU01047176;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_CQ_;
KW   BEL-39_CQ-I; BEL-39_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-821
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 232-232 (2011).
XX
DR   Genome; AAWU01047176; Positions    4012    4832.
XX
SQ   Sequence 821 BP; 277 A; 142 C; 176 G; 226 T; 0 other;
     tgttggcgct agaaaattaa ttatagtaaa aatttggctt taaaagcaaa tcatcaattt        60
     aagatttcat gagcagaaga attgactaga cttaattgaa atatcataga aagtgaaagc       120
     agcaaactcc gcgagatgtt tgaaatggat gcaacgacaa atcaggtaga atgaaggaag       180
     gacggaaacc agtagaacgc agttgcatca gataagaaat ggtcccacat ttagggttcc       240
     ttatgcgcgg tacacgcacg cgtgggtgcg tggtcagatt atataattgc tagtttagag       300
     aaacactatt tgtccctttc tatctttaag gaaggataga actaaacagt acaaatgttt       360
     tgaaatgcat taggaactct ttaggaccca cagaaaaact gtgtttagag ctagatctga       420
     gaaaacgaaa acgatggaac cgaaagagtt acaggatgca gggaattcac accctgacaa       480
     ggccacatca aatctcatcc aaattcagga gaaaaaatca tttacgacgg gactagatag       540
     gttagatttt cggtttagaa attatgtaac gctaggagaa cttgtagaat taagacgaca       600
     ttgtacgaat tattttcaat aaagcaagtt cggaggtcat ctcaaacctg tgtattaatc       660
     atactcagta ttgaactcct gtcttcgatt tttgggaaac ctacggtttc gactcatcca       720
     accttggtag cggcttcatc gagatcatcg cctaggactg cggcagtgtt cgacgtaagt       780
     ttccagttat aaaaacgttt cgttttttcg acgtttttac a                           821
//
ID   BEL-39_DTa-I repbase;    DNA;    INV; 5404 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5404
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (22-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~98% identity to each other.
XX
SQ   Sequence 5404 BP; 1479 A; 1473 C; 1160 G; 1292 T; 0 other;
     ttaaaaaatt ggtccttcga gtagccggat agccagaaac gtttgtttcg ggacatttca        60
     attaaattag tatttttcaa cggtgatcta tagatatctg cgtcgtatag aaccgtccct       120
     aacctcaatc gccatgcgga gtgtcactca acaacggggc ttttgcaaaa gccaaattac       180
     acgtgcgcat aacaatgcca ctaaattcgt ggaagatatt cagtcaatcc agaccctagt       240
     cgcgcgatta gctcaactac aggaaaacta tttacggttc gtaaagctca cagaggagct       300
     gcacgccttt gagtctgaag agggttggga aaaccctgag gaagactttg atgtatacga       360
     ggaaaaacac tacgctacgt atgctgtact aagcaatacg ctggaagagt taaaggctga       420
     agtcgctgag actactcttc ttgttcctga ccaatccctc aacacgtccc acagaagcca       480
     tgtggacttc cagttcgagc gaatcaagct cccaaccttt tcgggaaatt atgaagactg       540
     gaaacatttt tcggacatgt tcacggcatc catcgcatca cactcaggac tcactgactg       600
     ccaaagattt cactatttaa agtcctacct gtccggcgag gcgctcacat tagtaaaaca       660
     cattcccgtt actaatgaaa actacagtga agcctgggat aggttggaaa agcgatataa       720
     caaacagtcg ctaattatgc gatcgttcct caacagtttc ttaactctac ctagtgccac       780
     caccaccagc atcggcgccg tgcgaaaatt ggctgatggc gcagacgagg taattcgtgg       840
     attgagagca cttcaatgcg agcagcgaga tccttggtta atttttatat tattgacaaa       900
     agtggatcct gaaactcgcc aagcatgggc ccagtgcgca gaatctgaaa gtccaaatgt       960
     gaccatcaac cagtttctaa catttctcac atcacattgc gacaccttag aggcctgcca      1020
     acttgttcgc gcgccacaag ctcgacgagc cgctacaaca caccacgttg acgctcatca      1080
     gaaacgcgag gaaaacaagt gtctatcttg ccagcagaat catccactgt tcaggtgtga      1140
     tcaattctta tcattggacg tcgccacacg ccgagaattt ctgaggaaca gaaagctctg      1200
     tttcaattgc cttagtgcct cccacatggt cggcaattgc acatcaaaac acacctgccg      1260
     ggtctgccgc cgcaaacatc atacattagt tcacgacccg ccgcagatgt ctggcactgg      1320
     aacctaccag gagccactta gcgtaaacaa cagcaatttg ccatcaacat cccgagctgg      1380
     agccttaacc tcaatcaatc aacttcgcca tcaagacgat ccaccatcgg gaaacgttcc      1440
     ttctgtagag aacaattaca ctcatcatac cctggaaaat attccggttg caggtttgca      1500
     aacccttttg ccaaccatcc tcgcagacgt aatcgacgcc tggggaaata caacaacttg      1560
     tcggatgctc ctagacacgg gatccacaat aactttggca tcggaatcat ttgtccagcg      1620
     gattggcgtg catcgaacgc atgcacggat ttcaattctt ggtctggctg ccaacaacgc      1680
     tggcctcaca cgcggacgcg cacactttaa gctgcgctct cgtcattcgg atcaccacat      1740
     cgagatggtc tccttcatat tgccctcgct aacgtcatcg cttccagcgc aagctattga      1800
     cacttcgtct acaacctgga agcaaatctc agcgcttccc ttagcagacc ctacgttctg      1860
     cactccggga tctatagatg tcatcgttgg atctgatcaa ctctggggtc tatataccgg      1920
     agaaagaaaa tattttggta aggactaccc tatagctcac aatacaattt ttggttggat      1980
     ttttgcaggc tcgtacaatg cctgcgatga ccacatcact ccggccgtga cccatcacgc      2040
     ggaccttgac aggatggttc gatcattcat ggaaatggac agtgtgcagt gtgtccaagc      2100
     tctcttggac tctagtgatc ccacagagag taattttgcc cgcactcaca cgcgctccaa      2160
     ggacggtgtt tatattgtcg aattcccctt caaaggcgaa gcacctccta tcgaatcaac      2220
     tttaccacaa gccaccaacc gcctcgtttc actagagcgg aaatttcgtc gacacccgga      2280
     ccttaaacag caatacgagg attttttgga tgactacttg cagcgtggtc atatggaaca      2340
     gctgacctca gtccaagctg gagaaagcct ggacacttgc gtgtatttac cacatcacgc      2400
     agtcatcaag gtggacagcc tgactaccaa gtgtcgggtc gtcttcgacg gatctggaaa      2460
     ggttagttct gggatctcgc tcaacgatcg acttcatgtt gggccaccga tccaacggga      2520
     cttgctcgga gtctgcctac gtttccgaca gcaccgatat gttctatgtg cagatataaa      2580
     aaaaatgttt agagggattc aagttgccaa gcctcacacc aattttcaac gcattgtgtg      2640
     gcgcaagaat gagaaggaac cgattcttcg tttccgactt ctaaccgtca cctacggatt      2700
     ggcgccctcc ccatttctgg ccgttcgagt tttaaagcaa ttagctgacg atcattgcct      2760
     cgaatacccg gccgcatcac gagctttgtc aaacgacgct tatgtggacg acattccaac      2820
     tggatgcgat acagttgacg atcttttgct gcttaaacag gagctgattg gacttttaga      2880
     caaagctaaa ttcaaactac gaaaatggag ttcaaattgc tggcagcttc tacagtcact      2940
     gccacaaggg gatcgatgtt atgacccagt acaactcagt aaggattcac ccatgggacc      3000
     acacgttaag atcctgggac ttcagtggaa tccaggtcgt gacgtcatgt tcatcaaaac      3060
     aaccgagttc gatctcaacg ttattcccac caaacgataa ttattgtcgc aactgtccaa      3120
     aatctacgac ccactcggct tgacagcgcc cactaccgtg ctgctcaagc tcatatttca      3180
     agagagttgg acagctgtta tacattggga ccaaccaatt ccggacgctc tgaatgcccg      3240
     ttggagatca ctggtagagg atttaccgtc gctcacacac tgccaagtac ctcgatatat      3300
     tgctgcaccc tttcaacaaa tccaactaca cggattcgcc gacgcatcct cgcacgcgta      3360
     tggtgcagta gtctacagtc gggtcgcaat ggatggcaag tttcacatca ctttggtagc      3420
     ggcaaaaacc cgtgtagcac ccattaaacc agtatcaatt ccacgtctgg aattgaacgg      3480
     cgcactactt ctgtcgcggt tgcttactat tgtcaaatca tcgctaacca ttcctgttaa      3540
     caaccacgag ctgttggaca gattcggaga ttgtgctcca ctggctatcc gcaccaccac      3600
     ggaattggaa cacatacgtc tgcaacagaa cggcggagat tctgaacgaa tacccacgta      3660
     gctgctggag ccacgtacgc tctgaggaca atcctgccga ctgcgcatct cggggacttc      3720
     agccatcgaa gcttctcaaa cacgacctct ggtggaaggg tccatcctgg ttggcccatc      3780
     cacaatacga atggccacta tgtacaacca agttccgagc tgacaccaat ttggaggtca      3840
     gggccgagga acgtccagcc aagcccacaa ctctacatag ctttcctgac gaaagtatcg      3900
     acgagttgct catcaacaag atctcatcct agactcgtct catacgggta actagctatt      3960
     gttatcgctt tattcatcgt cttcgttcgc accacaggcc tatttctgag tatctcacat      4020
     caacggaact gcaggcagca cgggaccaac tcattcgcca tatccagcga aaggcttttc      4080
     aaagggaata tacacagcta gaaaacggac gccagctcca tgcaaaatct ccgctgatcc      4140
     ggttttctcc atttctcgac catgagaaac tactcagagt tggtggacga atcgagagat      4200
     cgactctcaa ctacaacgct aagcacccgt tgctcattcc aaagagttct ccaatcgcag      4260
     agttacttgt acgacattct cacgtgacga acctacacac aggggtggat gcaacgttca      4320
     caaatcttcg tcaacagtac tggatcttag gtgcgcgcaa cattgtccga aagactgtct      4380
     tccaatgcaa gcgctgcttc cttcaacgca aggctacaaa caaccatatc atgggagatc      4440
     tacctatgcc tcgagttcag gccagccgct gctttcaaca taccggcttg gattatgccg      4500
     gcccaatatc aatcaaagaa tctactggac gtacaccaag gatcggaaag gcatggttcg      4560
     ctatattcgt atgtctaaca acaaaggcga tccacgtcga agcagtcacc gatctaacaa      4620
     ccaatgcgtt catcgcagcg tttcaacgat tcattgctcg ccgctctaag ccgactgatc      4680
     tctactcaga caacggaaca acgtttcatg gcagcaaacg agtactggag gagatgaggc      4740
     tactcgccat aaagcacagc aaggatgaat atctatccaa ttatttcgcc aacgaacgaa      4800
     tcttgtggca cttcataccg ccttcggcac cacatttcgg cggaatatgg gagtctggag      4860
     ttcggtccat caagctacat atgaaacggg taatgggatc gacagcccta accttcgagg      4920
     aactttctac agtgttgatt cagattgaag ccctacttaa ctctcgccct ctttgctcat      4980
     ccggggatac aaccctcgat tcactcacac cagcccattt cctgactggc gctccctata      5040
     ctgctatacc ggaaccatcc cgccttgatg ttcccatcaa ccgcttggaa cgatggactt      5100
     aactacaagc aatggtccaa gggttttgga aacgttggca tatggaatac ctcacttctc      5160
     tccacgagcg aacaaaatgg caactggaga aagacaattt gaaggtcgac accctagtcg      5220
     tacttaagga accaaatcta cccccatcaa aatggatact cggacggatc ctggaggtgc      5280
     atcccggaca agacgacaag gtccgagttg ttaccatcaa aaccgcccaa cgagtactcc      5340
     agcgcccaat cactaaactg gctattttgc ccctttgctg aacaaccgtt caggggggcc      5400
     ggta                                                                   5404
//
ID   BEL-39_DTa-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-351
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5663-5663 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 351 BP; 96 A; 80 C; 59 G; 115 T; 1 other;
     tgtttgggaa ccagacaccc tgtactctta gttatattta ctttgtaatc tctttcgtta        60
     tctttacgca cacgcgcatg aagcgcagct taatttgtat gtacgtgtag gagctttgcc       120
     caaatgcatt gtctcggtca gtacttttcc attcatctct aactgtaacg tgtttacgat       180
     atcattcagc ttattcttgt actattctac caagctacag tcagtcacac ttttgctacc       240
     aacgcaacca cggcgcatcg cgcgattgat tctaatcatt attgaaatgt tcggtgaaga       300
     caaataaawa tcaacgaaaa cagtaacact ctggcgtctg atttataaac a                351
//
ID   BEL-39_SpEx-I repbase;    DNA;    INV; 4605 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4605
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6917-6917 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. It has an internal deletion around
CC   the region encoding an RT.
XX
FH   Key           Location/Qualifiers
FT   CDS           723..4100
FT                 /product="BEL-39_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase (partial), ribonuclease H, integrase,
FT                 and DUF5641."
FT                 /translation="MEGKINILKDLQTVIQKALTNFKKSPKDRLTSEYIQT
FT                 RLELLENDWLSFKNTKTQLYGQYKFEDIVGQKVADMYDITEDTYITCKCLM
FT                 KTLLNKINVSESQQNSSSNNNTSSSKSSNSFVKLPKITIPTFSGKYSEWTT
FT                 FHDLFISLVHNNTSLDNVQKLHYLKSHLTGEAEQLIRHTPITAANYSECWS
FT                 LLEKRYANKKYLTNCILKRLFGQKRITVESATSLKELLDTTSDCLSALKNL
FT                 NIDVSTWDVIIIHIVTFKLDNETRKQWELSISNDSSNELPTFDQFKIFIES
FT                 RFRALECIEPRKVMAHQVNHSSHIHNSKAMLATQSSSIVRCEYCAEPHKLC
FT                 FCKQFAKQSLDQRREFVAKNKICFNCLGSNHTVYDCKKQTFCRVCNKRHHS
FT                 LLHPNKELHANNDAVVKSATENTSASTSDQIVTCFSTRKFPKPKQVLLATA
FT                 LIKAENKLGEFQTVRALLDQGSQACFITEATAQYLRLKKVPVRGIVSGLGD
FT                 ERPTISKYMVNLTIKSXVDXEFILNINAYVLNHITSYLPERSVSTSSIDFI
FT                 NFKNLCLADPXFSTPNKIDILLGADAYCCIMKEGIVKSPSCNIIAQNTTLG
FT                 WILSGVVSTRSNSPANNISVHCAXFNEDHLLKRYWEIEEQTSPKKILSPEE
FT                 QKCEELYTKTTKRDDTGRYIVHLPFRDDNPACKAGGSRDIAEIRFKSLEKR
FT                 LDRNTDLKQKYTEVIDEYLQLGHLRAVKKEDNKKNETVYLPHHAVIREDKI
FT                 TTKVXVVFNXXEKNKKGVSLNDXLVVGPTLQSDLRHTILRWRVHAIGITKV
FT                 EEKDIDIKXHSAIKILGLTWNRREDCFQYSVTLPPLTTAPVTKRSIVSDIA
FT                 RLFDPLGWLAPSVVVAKIFIQKLWLAGVSWDEELITELKREWSTYREELIL
FT                 LTKIQVPRWLSSNSSDELELXGFSDTSKAAYSVVVYVRTTDAAGNIKVSLL
FT                 TAKTRVAPIKQISIPRLEQSGAVEACLNSRPISVIDFTDPGEPLPLTPGHC
FT                 FIGEPLVNVPDKNYESSNVNYLTRWQFIQRMYQSFWKRWSHEYLSKLMHRY
FT                 KWASKVPEPSIGDVVLVKEDDLPPSRWLLGRILEKHPGSDNLTGVVTLKTK
FT                 SGTIKRPTSKLCILPITD"
XX
SQ   Sequence 4605 BP; 1523 A; 819 C; 893 G; 1344 T; 26 other;
     ttggtccatc gaccccggat atcagacctg gaacagtctg attttttgag acacatccca        60
     agtactcgca gtggattgct gcggcaaagt actggaactc ccgcagaagc cgcgactgct       120
     tcktctattt ggaggactca gcttgcggtg ggatttatag ttcaactgga ggccacagag       180
     ggcgccacca gtaattcatc tcaagaacaa tcttcgagtt gaagatacag cttcgttcag       240
     caaggtggac gaggcgccac cggcgacagc agccgggagt tacaagttca aagtgacgcc       300
     acagggggcg ccactagtat caacccagtt camccgacct acgtgtttgt gtgtgagtga       360
     agtgcaaccg tgagtacagt attcaattta ttaaacagta gcagtgaaga tacaagcaaa       420
     tctgaacttt atttcaagga agattttaac ttagacaatt ttgaagatta ttttagtatg       480
     taagcaattt taaactgtat ttcaatgaac atttaaactt agagatttag taatacattt       540
     aggcttagaa tttaggactt agaatagttt tataaaaaac gggggaacgg ggaatccatg       600
     cccgatttct accagagatg agttatctca aacacttgta aaaattttcg cattttttwg       660
     gacttagaaa aatttcatta actttkaaca atttacactt gttgtttgtt ttattttcta       720
     asatggaagg taaaattaat atattaaaag accttcaaac tgtwatwcaa aaggctttaa       780
     ctaattttaa aaagagtcca aaagacagac ttacttcaga atatattcag actagacttg       840
     aactactaga aaatgattgg ttatcattta aaaatacaaa gactcaactt tatggccaat       900
     ataaatttga agatatagta ggtcaaaagg tcgcggatat gtatgatata accgaagata       960
     cttacattac ctgcaaatgt ctaatgaaaa ctctactwaa taagatcaac gttagtgagt      1020
     cacaacaaaa tagtagttcc aacaataaca ctagtagctc aaaatcatct aattcatttg      1080
     taaagttgcc aaaaattaca attcctacat tttctggaaa gtacagtgaa tggacaacct      1140
     ttcacgattt gtttatctca ttagtgcaca ataacacatc gttagataat gttcaaaaac      1200
     tgcattatct taaaagtcac ctcacaggtg aagctgagca gttgattcga cacacaccaa      1260
     ttactgccgc taattatagt gaatgttggt cgcttttaga aaagcgttat gcaaataaga      1320
     agtacctaac aaactgtatt ttgaaaagac ttttcggcca aaaacgtata actgttgagt      1380
     cagcaacatc attaaaggaa ttattagata ccacaagtga ctgtttgagt gcgttgaaaa      1440
     atctwaatat cgatgttagt acatgggacg ttatcatcat tcatatcgta acgtttaagt      1500
     tagataatga aactcgtaag cagtgggagt taagtatttc caacgactca agtaacgaat      1560
     tgcccacatt tgaccagttc aaaatcttta ttgaaagtcg atttcgcgca cttgaatgta      1620
     tcgagcccag gaaggttatg gctcaccagg tcaatcacag ttcacacatt cacaattcta      1680
     aggcgatgtt agccacgcag tcgtcmagta tagtacgttg cgaatactgt gcggaacccc      1740
     acaaactctg cttctgtaaa caatttgcta aacaatccct agaccaaaga cgcgagtttg      1800
     tggcaaagaa taaaatttgt ttcaattgtt taggaagcaa ccatacagta tacgactgca      1860
     aaaaacaaac gttttgtaga gtatgcaaca aacgacacca ttcattgctg caccctaata      1920
     aggaactaca tgcaaacaat gatgcggttg taaagtccgc tactgaaaac actagtgctt      1980
     cgactagtga tcagatcgtg acctgcttct ctacacgcaa gtttcccaaa cctaaacagg      2040
     ttttattagc cactgcgcta ataaaggccg agaacaagct gggtgaattt cagacagtcc      2100
     gagctttgct ggatcaaggc tcgcaggctt gtttcataac cgaggccact gctcaatatc      2160
     ttcgattgaa gaaagttccm gtccgcggca tcgtttctgg cttgggagac gaaaggccaa      2220
     ccatttccaa atatatggtg aacttaacta ttaagtctmm agtggatcak gagtttatac      2280
     tcaacattaa tgcktatgtt ttgaatcaca taacgtcata tttaccggaa cggagtgtga      2340
     gtactagttc aatagatttt attaatttta aaaatctatg tttagcggat cctwatttta      2400
     gtacacccaa taaaatagat attttattgg gagcagatgc ttactgttgc atcatgaagg      2460
     aaggtatagt gaagagccca tcctgtaata tcatagctca gaacaccact ctagggtgga      2520
     tcctttctgg tgtagtcagt acaaggtcaa actcacctgc aaataatatt agcgtacatt      2580
     gcgcamagtt caatgaagat caccttctga aaaggtattg ggagatagaa gagcaaacca      2640
     gtccaaagaa aatcttaagt ccagaagagc aaaaatgcga agaactatat accaaaacaa      2700
     ctaaaagaga tgatacaggc agatatatag ttcacttacc tttccgtgac gataaccctg      2760
     catgtaaggc cggaggttct cgtgacatag cggaaataag atttaaatct ctagaaaaaa      2820
     gattagatag gaacacagat ttaaaacaaa aatatacaga agtaattgac gagtatttac      2880
     aattaggaca tttaagagct gtaaagaaag aagacaataa aaagaatgaa actgtttact      2940
     tacctcacca tgcggttatt agagaagata agatcacgac gaaggtncna gttgtgttta      3000
     acncctmtga aaagaataaa aagggggtat ccctcaacga twctctggtg gttgggccga      3060
     cactacaatc ggacttaaga catacaattc tgcgttggag agtgcatgct attggtatta      3120
     cgaaggtaga agagaaggac atagacatta agmtgcatag tgcaataaaa attctagggc      3180
     ttacctggaa ccgtcgcgaa gactgcttcc aatactccgt aactcttcca ccgctgacca      3240
     ctgcacctgt aacaaaaaga tctattgtat cagacatagc tcgattgttt gacccgttag      3300
     gatggttagc acctagcgtg gtagtagcaa aaatatttat acaaaaatta tggcttgcag      3360
     gngtgagttg ggatgaggaa ctaattactg aacttaaaag ggaatggagt acttaccgtg      3420
     aagagttaat cttactcacc aagatccagg tacctcgctg gcttagttca aattcatcgg      3480
     atgaactcga gttamatggc tttagtgaca cttcgaaagc cgcttactcg gtcgtcgtgt      3540
     atgtgagaac aacagacgct gctggtaata ttaaagtgtc tcttttgaca gctaaaacga      3600
     gagtagctcc gatyaaacag atcagcattc ctcgattaga gcaaagtggc gcagtcgaag      3660
     catgcctgaa ttcgcgaccc ataagtgtga ttgactttac tgatcctggt gaaccacttc      3720
     ctttaacgcc tggacattgt tttataggag aaccattagt taacgttcca gacaaaaatt      3780
     acgaaagttc aaacgttaat tacttgactc ggtggcaatt tattcaacgc atgtatcagt      3840
     ctttttggaa aagatggtca catgagtatt tatctaagct catgcatagg tacaaatggg      3900
     cttcaaaggt tccagaacct agtataggtg acgtggtatt agtcaaagag gacgatttac      3960
     caccaagtcg ttggttattg ggtagaattc tagaaaagca tcccggaagc gataacttaa      4020
     ctggagtcgt aacattgaaa acaaaatcag gcactattaa aagaccgact tccaagctgt      4080
     gcattctacc aataaccgat tgatttggat ctagatgctt aggtcaggac acttgagatc      4140
     aagttatttc aacttgtcag ttttgtgtgt acaagtttct attttaattt tactgtatta      4200
     taatttaagt tcaattttta caagtcctaa ggttattgtt ataagtttta gtttactttc      4260
     ctttttacat ttaaaaatat attttaagtt ttattttgca taatgtatgt taagttttgt      4320
     ttagaagtta agatcaattt ataaaagctt ttgttataca taatagtatg tacttactta      4380
     cctaccagtg caaatattta tttatgtaat gaagtccaat catttgtttg tatttagata      4440
     ggtacctgaa tgcaaataat tgatatttga aggtaacttt tatgtcaact taaaatattc      4500
     atgtttgtta tgtaagatca aatagttttt tgttttattt ttatttacat taaaaaatgt      4560
     tattaagaag gacatttcgc caacaaatgt ccttggtggg cggta                      4605
//
ID   BEL-39_SpEx-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-39_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-292
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6946-6946 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 292 BP; 105 A; 47 C; 46 G; 93 T; 1 other;
     tgttgaagac caaaacccag gacaaagtaa cgaaaccata ataattgtat taaatatttt        60
     tagttcmaat tttgcaacta gatggcgttg ccgcaattaa aagcgagcta tggtttcgtt       120
     acaacaaata gtataagtgt gtaatttctt ttgtatttag ggttcaaatt catagatcac       180
     ttagatcata ttcagttcaa atatacgaac cagcagttca agcatacata agtggtttaa       240
     tttcaaccat attagtgcta caacagatca acgattactt cggtaattaa ca               292
//
ID   BEL-3_AA-I  repbase;    DNA;    INV; 3468 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AA_;
KW   BEL-3_AA-LTR; BEL-3_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3468
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 855-855 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TACGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(57..2264,2268..3353)
FT                 /product="BEL-3_AA-I_1p"
FT                 /translation="MTSDSESVKDKTVLNFTENPCEICGPSTHDEAMVGCD
FT                 ECSGWFHTRCVGIKEGEMPKSWYCQSKACQEKAQEYQKRKKQTRNRKQTDE
FT                 SDKSSVNSRLGASSVNVKVRALEERQKRQMEELETEMHLRKKERELQRAYE
FT                 KKIMELELQIRAEEEEEELAWQAEMLRKKTEQVERMKANQESFEERLASMD
FT                 KELAGLSNLKVPKPASKIDTSVLRVEPSSKINRNALKLMKGNFQKFVEDDE
FT                 NTEEEDDDDEYSKNSDLRSQSSGSSMERKVSNNASRVMRNKVDSVSQDGLG
FT                 QQQTGPTKAQLAARKGLTYKLPKFSGNPAQWPLFYAAYKASNDACGYMNHE
FT                 NLMRLQEALEGDALELVSGQLLLPETIPRVIEKLRRHYGRPEQLLESLLDK
FT                 VNRLDPPQPDNLKSFISFGNTVEQLCGHLEAADLRQHLVNPLLIKSLVAKL
FT                 PDREKREWVHYRKGRGETTLRTLTDFLMEIVEDACEANVDVEFKPPTRSSQ
FT                 SGRSMPMARGGLYCHSAISSSPANTGEKILKPCNQCRRTEHRLRHCSEFKK
FT                 MRYADRLRLVKREKLCHVCLNEHGGQCKFKIRCNIGECREFHNPLMHPVGN
FT                 VVGLSAHIRTNCTVLFRIVPVQLHCGEKSATVLAFLDEGASVTLVEKGLAD
FT                 RLGAVGVQERLVIRWTGNVSRVEDTRRTSLWVSSTRASVVDKMLLHTVHTV
FT                 GKLMLPHQKLDFEGDRRAVPSHARIVGSSLTMDSPNLPMRNNIHSFVPIEA
FT                 RVGNPMEPIAVRTNLGWTVYGPKRSTTVASSNYLGYHQQVNDENLQELLKS
FT                 QYALEESVMVLSEQSEEKRVQEILEGTTKRVGDHSETRLLRSVEEERPAVP
FT                 KNCNREWQKPVRAVGVIWDPNMDQCACYKMEYEELKSCRHESERSAKRFAR
FT                 GCVKRIFGPSILVPRVRSTSTIRGKIVRQHRSRSKQNWRGLPTKWNVAHGL
FT                 LKWRQGPPLQSNATQSSAIEETEEAAKNMLHKAIDDELISRWSKLLWEEAS
FT                 VGCFVINNRRKGKGKLAENTRVPAKGRHRAHWDSFPDEKNTFTRCLKYHPD
FT                 GSAEVTKRSGPIYQSSLDDGKIRKSWKRGIAAAVIPGRDML"
XX
SQ   Sequence 3468 BP; 997 A; 788 C; 1031 G; 652 T; 0 other;
     ttcttaaaaa agaagtgaca ctaataaagt gtcccagtga taatccggcc cacaaaatga        60
     cttccgattc cgaatccgtg aaggacaaaa ccgtcctaaa tttcacggag aacccttgtg       120
     aaatctgcgg cccgtcgacg cacgatgaag caatggtcgg ctgtgatgaa tgttcgggat       180
     ggttccatac ccgttgcgtg ggtatcaaag aaggagagat gcccaaaagt tggtactgcc       240
     aaagcaaagc ctgtcaggaa aaggcccagg agtaccagaa gcggaagaag cagactcgta       300
     atcggaagca aacggacgag tctgacaaat ccagcgtcaa ctcccgctta ggtgcgtcta       360
     gtgtaaatgt gaaagtcaga gcgctagaag aacgtcagaa gcggcagatg gaagagctgg       420
     aaacggagat gcatctgcgg aagaaggaaa gggagctgca gcgtgcgtac gagaagaaga       480
     taatggagtt ggagctgcag atacgtgcag aggaagaaga agaagaattg gcttggcaag       540
     cggagatgct tcgaaagaag acggagcagg tcgagcgtat gaaggcaaac caggagtcgt       600
     tcgaggagcg gttggcatcc atggataagg agttagcggg attgtcgaac cttaaggtgc       660
     caaagccggc gtcaaaaata gatacgagcg ttttgcgagt ggagccttcc agcaaaatca       720
     accgaaacgc gttaaagctg atgaagggga acttccagaa gttcgtagaa gacgacgaaa       780
     acaccgagga ggaagacgat gacgacgagt attctaaaaa ttcggatctg cgaagccaga       840
     gttccggttc gtccatggag aggaaggtca gcaacaacgc ttcgcgagtt atgaggaaca       900
     aggtcgacag tgtgagccaa gacgggctgg ggcaacagca gaccggaccg acgaaggcac       960
     agctggctgc acgaaaggga cttacctata agcttcccaa attctcgggc aatccagcac      1020
     agtggccctt gttctacgcg gcctacaaag cgtccaacga tgcctgtggc tacatgaacc      1080
     acgagaacct gatgcgactg caggaagcgc tggaaggaga tgcactcgag ctggtatctg      1140
     gccagcttct tcttcccgaa accatcccaa gggttatcga gaagttgcgt cgccattacg      1200
     gccgtccaga gcagctgttg gaaagtctgc tggacaaggt caaccgcctg gatcctccgc      1260
     aaccggataa tttaaagagc ttcatttcat ttggaaacac ggtggagcag ctctgcggtc      1320
     acttggaggc cgctgatcta cggcaacatc tcgtcaaccc gctgctaatt aagtcgctgg      1380
     tcgccaagct gccagatcgt gagaagcgcg agtgggttca ctaccgtaaa ggtcgcggag      1440
     aaacaacgct gcggacgctg acggacttcc tcatggaaat agtggaagat gcctgcgaag      1500
     ccaacgtcga cgtagagttc aagccaccca caagaagttc gcaatccgga agaagtatgc      1560
     caatggcgag aggtggactt tattgccaca gtgcaatcag cagttcaccc gctaacaccg      1620
     gtgaaaaaat cttgaaacca tgcaaccaat gtcggaggac ggaacatcgg ttgcggcact      1680
     gcagtgaatt caagaagatg cggtatgctg atcggctaag gctggtgaaa cgcgagaagc      1740
     tgtgccacgt gtgtctcaac gaacacggtg gccagtgtaa attcaaaatc cggtgcaata      1800
     tcggtgaatg cagggaattc cacaatccgc taatgcatcc tgttggcaat gtggtcgggc      1860
     tcagtgcaca catccggacc aactgcacgg ttctcttccg gattgttcca gttcagctac      1920
     actgtggtga aaaatcggct actgtactag ctttcctgga cgaaggtgcg tccgtcacgc      1980
     tggtggagaa agggctcgcc gatcgcctgg gcgcggtcgg agtacaagag cgactggtca      2040
     tcagatggac gggaaatgtt tcgcgcgtgg aagatacgag gagaacgagt ctgtgggtgt      2100
     ccagtacacg tgctagcgtc gtcgacaaaa tgttactgca cactgtccac actgttggca      2160
     agttgatgct accgcatcag aagctagact tcgagggaga tcgtcgcgca gtaccctcac      2220
     atgcgaggat tgtcggatcg agtcttacga tggacagccc caactaattg ccgatgcgaa      2280
     acaatatcca ctcgtttgtt ccgattgagg caagagtggg aaacccgatg gaaccgatcg      2340
     ccgtccgtac aaatctggga tggacagtgt acggtccaaa acgatcgacg acagtagcgt      2400
     ccagtaacta tctgggctac catcagcagg ttaacgacga aaatctgcag gaactgctca      2460
     aaagccagta tgcgctggag gaatcggtga tggtgctatc agaacaatcg gaggagaaac      2520
     gcgtccagga aatactggag ggcacaacaa aacgtgtagg cgaccactcc gagaccagat      2580
     tgttgcgaag tgtcgaagag gaaaggccgg cggtgccgaa aaattgcaat cgcgagtggc      2640
     aaaagccggt gagagctgtt ggtgtcatct gggatccaaa catggaccag tgtgcatgtt      2700
     acaagatgga atacgaggag ttgaagtcgt gccgacacga aagcgaaagg tcggcgaaaa      2760
     ggttcgccag aggctgcgtc aagcgaatct ttggtccaag tatactggtg cctcgagtaa      2820
     ggtcaacgtc gaccatccgc ggcaaaatcg tcaggcagca caggagccgt tcgaaacaaa      2880
     attggcgagg gcttccaacc aagtggaatg tagcacacgg gctgcttaag tggagacaag      2940
     gtcctccatt gcaaagcaac gcaacgcaaa gttcggcgat cgaagaaacg gaggaggcag      3000
     ctaagaacat gctgcataaa gcgatcgacg atgaactcat ttcacgctgg tcaaaattat      3060
     tgtgggaaga agcaagcgtt gggtgctttg tgatcaacaa ccgacgcaag ggaaaaggaa      3120
     agctggcaga aaatacacgg gttccggcaa aggggcggca ccgggcgcat tgggacagtt      3180
     ttcccgacga aaagaatacg tttacacgct gcttgaagta ccacccggat ggatcggcgg      3240
     aagtgaccaa aaggagcggc ccaatctacc aaagttctct ggatgacggg aagattcgga      3300
     agtcatggaa gagaggtatc gcagcagctg taattccggg tcgagacatg ctgtaactcc      3360
     aggtgcagac atgatgacta ttgatgggaa ggtgcagaga caaggtgatg aatttagcgg      3420
     cgctggaaat caagtaaatc cgggagtgcc ggatgttacg ggctgggg                   3468
//
ID   BEL-3_AA-LTR repbase;    DNA;    INV; 703 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AA_;
KW   BEL-3_AA-I; BEL-3_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-703
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 856-856 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 703 BP; 244 A; 116 C; 152 G; 191 T; 0 other;
     tgttgcgacg ccgcttgaac aggtctactg cctgaacagt cctaacggcg cagcataaac        60
     acaacatgac agctcccgta aagtggtagt gtagacagag agggcatatg tttatgtagt       120
     agaagttgac cagtcggata ttggaaaaaa gtagtttcgc catcgcaata aatcgttgtg       180
     attacagtga gcatttagtt tattccatag ggccttatat taagtgatta ttaagcaagg       240
     aagactagat tctgcaacat ctgtgacacg attctattgg taaggacctg aaatgaaata       300
     acgaagttag tatattaaaa tgtaaatact tactagccct actctgcagc cgtggtgatt       360
     gcaatcaata tccggtaaat tacctgaaaa agagaaggat tatccccatc aagtttagaa       420
     gattcgctga taaactgtaa gtagaaaagt atagagaaga atattgtgtt aataagagtt       480
     tgtatgcatt agaaaggcat ccgcagagaa gtagttcagt tagggtagcg gtacccaaca       540
     tcatcacaca gtggaaaagg aagtacaagg aaaccacttc ttgtgagtaa cattttagtc       600
     ttataagatg aataattata ataaaatgaa ataaatttca gttttaagcg ttgctgaaaa       660
     ccaatcagcc gctgccgaaa aatttggttt cccttcggga aca                         703
//
ID   BEL-3_AEc-I repbase;    DNA;    INV; 5539 BP.
XX
AC   .
XX
DT   13-OCT-2011 (Rel. 19.03, Created)
DT   13-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AEc_;
KW   BEL-3_AEc-LTR; BEL-3_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-5539
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 657-657 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4411-4920] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..3977
FT                 /product="BEL-3_AEc-I_2p"
FT                 /translation="MEQVKLTLRITRSAFTRVYTSFRTEQSKESPDITSLQ
FT                 VSFALLRDKTSELNELNQKLQTLMIEAGEPEEAIGREAQHADEYATKYHQA
FT                 KVGLTCLLERKNELETPTPVPLQRTTTTTQESIRALKLPKIELRKFGGDIK
FT                 DWLPFWSTFKKIHEDATLSREDKFQYLVQSMVKDSRAFEVVNSFPLTAGNY
FT                 EKAIHSLESRFGKKDLLIEYYVRELLKLVLSKNKNMSLTITYDKLETHIRA
FT                 LETLGVTTEMCAAMLLPLVESSLPEETLRTWQRTRAQLIPHSDASVVNVTA
FT                 KDRLTSLMTFLGREVESEERIQMAKTCFESNDFQMTKDKNKRKSKSERDPE
FT                 IATASSLLSAKEAKPQQCIFCGANHDSLSCETARSMDLEKRIQAVKDKQGC
FT                 FNCLKVGHSYKRCRNKIKCPWCSKGHCLLMCRNLSSKDETKQADEKKPKEP
FT                 AFHEGNSCLANVSSNTKMFLPTLKVKMRGPKGLVNVRAVIDTGSHRSYVLE
FT                 KVARELGYETESEQTMVHLLFGGTKTKPQRHKTCRIYIGNLDGTYKCDFVA
FT                 LQQNIICQDAPCKIDDTWMDILEKKDIRLSDTGERQESISLLIGADVAGKI
FT                 FTGKVLQINQGITALETKLGWTILGRNIDDDSGTDTTLTIMSMFTQEANIS
FT                 DLWRLDVLGITDPIESVTKEAHQAEIKTSFQETTKIDNEGRYEVLLPWKEN
FT                 HPPLRDNRDVAEKRLKGVTKRLRQEDLFDDYQAVFDNWLEEAIIEKVPVLE
FT                 VDQESYYLPHRPVVKKEGTTKIRPVFDASAKVKESPSLNQCLETGPNLIEL
FT                 IPALLHRFRERKIGVTADIAKAFLQIGVSPSDRDVLRFLWWNVDGEIEIYR
FT                 HRRVVFGLTSSPFLLGAAIELHINRALNSTILPYKKAVYEKLAKSFYVDDC
FT                 VTSVDSYSDFEVFRREACSLLTQAKFDLRDWKYTGKDPESQSTVLGLIWDT
FT                 KRDTLMLPEFPAPTITEKITKRVILSQVQKVYDPLGFVCPVLLKPKLLLQD
FT                 LWNKNVDWDTEIDDDIKHEFLKWVQQLGLLRILKFPRWIFGEERGPDSLSF
FT                 HVFVDASKDAYAAAIFVRVESSIGVEVHLVEAKSRVAPKEKKTIPRLELLA
FT                 ASIGARMMRSFVKAMDYQDIKTYFWSDSMTILTWIRQTRQWAVFVWNRVLE
FT                 IRSLTDIESWRYVPGVMNPADLSSRGCDAKKFLELKWWEGPEWLKLPPKEW
FT                 PKEEGKIDENIVNLELRKTSGRCKERIFPETTVEEIAMLTSVEQAGEETVP
FT                 WYLQRLSMYSKILCTIAWILRFVNNCRRIQVNKTQEL"
XX
SQ   Sequence 5539 BP; 1770 A; 1092 C; 1302 G; 1373 T; 2 other;
     ttctggcgac cgtgacagga ctgagtaatt tcgttgtagc cgttttatag caagcagaga        60
     tcgtaagaaa gtaatccgta gacatggaac aagtaaagtt aacgctaaga ataacacgat       120
     ccgcctttac gagagtgtac acttccttcc ggactgagca gtcgaaggaa tcgccggaca       180
     taacctcatt gcaagtcagc ttcgcgttgc tacgagacaa aacgagtgag cttaatgagc       240
     taaatcagaa gctgcagacc ttgatgatcg aagctggaga gcctgaagaa gccattggaa       300
     gagaggcaca acacgcagat gagtatgcca cgaaatacca tcaagcaaag gtcgggctaa       360
     cctgtctatt agagcggaag aatgaactcg aaacgccgac accggttccg ctgcaacgga       420
     ctaccacgac aacacaggaa agtatacgcg cattaaaatt gccgaaaatt gaattaagaa       480
     agtttggcgg tgatatcaaa gattggcttc cgttttggag tacttttaag aaaattcatg       540
     aagacgcgac gttgtcgagg gaagataaat tccaatattt agtacagtct atggtaaaag       600
     actcgcgcgc gtttgaagta gtgaatagtt ttccactaac ggccggtaat tatgagaaag       660
     ccatacacag cctcgagtct cgattcggca aaaaagactt attgattgaa tattatgtgc       720
     gcgaactttt aaagttagtc ttaagtaaga ataaaaacat gtcgctcaca atcacttatg       780
     ataaattaga gacgcatata cgagcacttg aaactttagg cgtgacaaca gaaatgtgcg       840
     cagcaatgtt gcttccttta gtagaatcct cactgcctga agagacctta cgtacatggc       900
     aacgaacaag ggctcaatta attcctcatt ctgacgcgtc tgttgtaaat gttactgcaa       960
     aagatcgtct tactagtcta atgacttttc taggaagaga ggtcgagagt gaggaacgta      1020
     ttcaaatggc aaaaacatgc ttcgagagca acgatttcca gatgacaaag gacaaaaata      1080
     aaaggaaatc aaagagtgaa cgagatccag agatagcgac agcgtctagc ttactatcgg      1140
     cgaaagaagc aaagccgcag caatgtatat tttgtggagc taatcatgac agcttgagtt      1200
     gtgaaacggc cagaagtatg gacttagaga agagaatcca agctgtaaaa gacaagcagg      1260
     gctgttttaa ttgtctgaaa gtagggcaca gctataaaag atgccgtaac aaaataaaat      1320
     gcccttggtg cagcaaagga cattgcctgc tgatgtgtag gaacctgtcg agcaaggacg      1380
     agacaaagca agcggatgag aagaaaccga aagaaccagc ttttcacgag ggaaacagtt      1440
     gtctcgctaa tgtctcttcg aatacaaaaa tgttcctgcc tacactaaaa gtcaagatgc      1500
     gaggtccaaa aggcttggtg aatgttcgcg ccgtcataga tactggctcg catagatctt      1560
     atgttttgga aaaggtagcc agagagcttg gatacgagac tgagagcgaa cagacgatgg      1620
     tacacttgtt gtttggagga actaaaacca aacctcagag acacaaaact tgtcggatct      1680
     acatcggcaa cttagatgga acatataaat gcgacttcgt agctttgcaa caaaacatta      1740
     tctgccagga cgccccttgt aagatcgatg atacatggat ggatatactt gagaaaaagg      1800
     acatacgttt gagcgacacc ggtgaacgtc aagaatccat ttcactattg attggagctg      1860
     atgttgctgg caagatattc acaggaaaag tcctgcagat aaatcaagga ataacagctc      1920
     tagaaactaa gcttggatgg acaatcttag gtaggaatat agacgatgac agcggcaccg      1980
     atactacgct gacgattatg tcaatgttca ctcaagaagc caacatatca gacttatgga      2040
     gactcgacgt cttgggcatc acggatccta ttgagagtgt tactaaagag gcacatcaag      2100
     ctgaaataaa gacctcattt caagagacaa cgaaaatcga caacgaaggt cgatacgaag      2160
     ttcttctgcc gtggaaagag aatcatccac ctttacgaga taatcgagac gtagccgaga      2220
     aaagactaaa aggcgttaca aagagattgc gacaagaaga tttatttgac gactaccagg      2280
     ctgtctttga taattggctc gaagaagcga ttattgaaaa ggtacctgta cttgaagtcg      2340
     accaagagag ctactatctt ccacacaggc ctgtagtcaa gaaagaagga actacgaaga      2400
     tacgccctgt tttcgatgcg tcagcaaaag tcaaggaatc gccttcgctt aaccaatgct      2460
     tggagactgg acccaatctt atagagctta ttccagcatt gctacatcga tttcgagaga      2520
     ggaagatagg ggtaacagct gatatcgcaa aagccttctt acaaatcggc gtctctccgt      2580
     cggatagaga tgttttgaga ttcctgtggt ggaacgttga cggagaaata gagatttatc      2640
     gacatcgtcg agttgtcttc ggattgacaa gcagcccatt ccttttaggg gcggcgattg      2700
     aattgcatat taacagagcc ttaaactcta ccattttgcc atataagaaa gcagtttatg      2760
     agaaactggc aaaatccttt tatgtcgatg actgtgttac tagtgtcgat tcttattctg      2820
     attttgaagt tttcaggaga gaagcctgtt cccttttgac ccaagccaaa tttgacttaa      2880
     gagattggaa atacactggc aaggatcctg agagtcagtc aacggtgctt ggacttatat      2940
     gggacaccaa aagggatact ttaatgttac cggaatttcc tgcaccgacg atcacggaga      3000
     aaataacgaa gagagtcatc ttgtcacaag tacagaaagt ttacgaccct ctcggattcg      3060
     tctgtcccgt actgttaaaa ccaaaattac tattgcaaga tctgtggaat aaaaacgtgg      3120
     attgggacac agaaatagac gacgacatta agcacgaatt tcttaaatgg gttcagcaac      3180
     taggtctcct acgtatattg aagtttccac gatggatttt tggagaggaa agaggtcccg      3240
     actcactgtc ctttcatgtt tttgtcgacg ccagtaaaga cgcatacgcg gcggcaatct      3300
     tcgtacgagt tgagtcaagc ataggagtcg aggtacatct cgtagaagcc aaatctagag      3360
     tagcacccaa agagaagaag accatacctc gccttgaatt actagcagcc tccattggag      3420
     ctaggatgat gcgatccttc gtaaaggcta tggattatca agatatcaag acctatttct      3480
     ggagcgactc gatgaccatt ctaacatgga ttcgacaaac aagacaatgg gcagtctttg      3540
     tatggaatcg tgttctggaa ataaggagcc ttacggatat tgaatcttgg agatatgttc      3600
     ctggagtgat gaacccagcg gatttatcct cacgaggttg tgatgctaag aaattccttg      3660
     aactgaaatg gtgggaggga ccggagtggt tgaaactacc tcccaaagag tggcccaaag      3720
     aggaaggaaa aattgacgag aacatagtta atttagagtt acgcaagact tccggacgat      3780
     gcaaagagag aatattcccc gagactactg ttgaagaaat cgctatgcta acctccgtag      3840
     aacaagcggg tgaagagaca gtcccctggt atttacagag actttcgatg tattccaaaa      3900
     ttctgtgtac catcgcgtgg atattaagat ttgtgaataa ctgtcgaaga atccaagtaa      3960
     acaaaactca agagttaamt gccaaagaaa ttactaaggc agaattgctt ctctgtagac      4020
     tggcacagaa agaatcattc ctgggaagca acgattcacg attacgaagc ttaaatgttt      4080
     tcgaggagaa tggactaata cgcacaaaga caatgatctc caatcgtcaa gacacttttt      4140
     ctttcagatg tcccgtggtg ttggactcag ctcatttatt gacgttgaaa attatctttc      4200
     atattcatct gaaacttaat catgctggta ttgacattgt gatgaatagc ttacgcgaga      4260
     agttttgggt cttgcaatgc cgtcgtacgg tacgctcagt cataagaaaa tgcgtcgttt      4320
     gtcgtcggta tgcatcgaaa acaatgaaag caccacctgg attgttacct gaagacagag      4380
     tgagagatgc cgcagcgttt gaagtgatag gtatcgatta cgctggacca cttttttagc      4440
     ggtggacaaa aggcttacat ctgtttgttt acttgtgcag tctaccgtgc agtccacttg      4500
     gagttggtta catctctatc aacagaggaa tttctggagg ccttcagaag attcattgca      4560
     cgtcgaggaa gacctactat agtatatagc gacaatggga aaaattttgt aggggccaag      4620
     aacctactac agaagattaa ttggcggaaa atttcccaat attgtgcmct caatgagata      4680
     acatggcatt ttaatccacc ttcagctgcc tggtggggag gatggtggga gcgacttatc      4740
     cgcctcctta aagatctact gaagaggaca ttaaagagaa cttcgttgag ctatgaagaa      4800
     atgaacactg ttctatgcga ttgcgaagct actatgaatt caagaccact tacctacttg      4860
     acagaggaaa atactgaaat cacagcgctg actccagcga tgttcatcag tgacattcga      4920
     gaaaatggcg ttccagactt ggatcaagtt tacaagtccc actttgcaaa gaggatacgc      4980
     tatcgtcaaa gattgaaaga agagttcaga aaacgtttcc gtatacagta cttgggtcag      5040
     ttatctagac gaactaaacc cagcaatagt tccgcgtccg tggctgtcgg ggacgtcgtg      5100
     cttattgaaa acaatttaca aaagcgatta gactggccgc tcgccgtcat tagagaagtc      5160
     taccccggaa aagatggtta cgtgcgggtg gtaaaactga aaacgagtaa aggtgaactg      5220
     gttcgaccca tccaaagact aattcccttg gaagttgaac actccagtcc tgaagctgac      5280
     aactttatcg ggtctatcac tacgacgtca gagactacta agggaaatgc agctaacacc      5340
     ctcgaggagt ccgtagctgt ccctagagag gaaccgaaat cgattggaag aaacgagctt      5400
     aaagacccga aggggtcgta tcatcaagaa accggaccgg ttcagatact agaaatgttt      5460
     gtcattttat ttttgttttc atttttttag ataggttgat ttgctcctac caagaagtca      5520
     caactcaagg tgggagaga                                                   5539
//
ID   BEL-3_AEc-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   .
XX
DT   13-OCT-2011 (Rel. 19.03, Created)
DT   13-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AEc_;
KW   BEL-3_AEc-I; BEL-3_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-319
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 658-658 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 319 BP; 83 A; 68 C; 87 G; 81 T; 0 other;
     tgttggaagc gcgctctcaa taccgttgac atagagggcg agacgcgtgt taccggccga        60
     ggagcgagtt agaggaaggt gccggaatgg ccgcgtgtga acgagaagaa gacgagatcg       120
     gatcgcgagc tgagcgagtg ctgtccgttc ccgccaatag aactttttac ttttgccttt       180
     tttactgcca ttgttactac gaataatccg agccgtatgc tctcaatgtt tttgtaataa       240
     agtagcgtgt tcgtgtaaaa tacgaagaag tgtctaatat tattgagaac cttacgatcc       300
     cgaaaccgcg gctgcaaca                                                    319
//
ID   BEL-3_AnFu-I repbase;    DNA;    INV; 5982 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5982
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 661-661 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           715..5979
FT                 /product="BEL-3_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MGLDHTPEKKDDDNDFKLLVHQRGQIKRRVTLINRTL
FT                 KEAEEDPTKVTPTLLKVFAKKLDVHYQEYTTVHREIMEACPPSKLEEQDEM
FT                 LMAFDILHTEAMERLEQQSVSLPQTAVPVNSTVHTPIMVQHQPLRAPIPSF
FT                 DGKVENWPKFQTMFEDIVGRSNVSDAMKLHHLDKALVGDASGWITAKMIQD
FT                 NNFQLTWKQLKERFENPRVIVDTHLVGLLELKAIPKRNHKDLTELVKTVNR
FT                 HVGGLQYQNIQVDAMSGLLLTKIITARLDDQTLQLWERTQEHGKLPDFEQI
FT                 MNFLQSECQVLERFQNRPQAATVKEGNHKQSTGKLPSQKAHAVSSSSTSHP
FT                 CLVCSEKHRHFECPALNKMEPAKRSAKVRELNLCYNCLRAGHRVNECPSQR
FT                 GCSKCQKKHHTLLHEDAKPASEKPTPMINTSPAVWSDTTTASFNPSSYTAV
FT                 PKNRPFKQTTAMLMTALVNIKNSDNGKIPCRVLLDSGSQASFISKAIADRL
FT                 SLARIPTFVPITGVGAVKTCAREKIIVAVESRCSDYSTTVECLVIPKVTGI
FT                 IPSTQLDITQWPLPPGLVLADPDFHTPGRIDMLLGVSHFLRLLKSGRMQLR
FT                 EDLPELQETHLGWVVAGDVEELKNDQQSCTATTASLPETMKRFWEVEEIED
FT                 TDQPTEHEACERVFRETHHRDEDGRYVVALPFREFPPQLKVNRELALRRFL
FT                 SLERRMKKDSSLKQQYAKFIDDYEALGHCHEIREDLDEPNKACFYMPHHAV
FT                 LRPSSSSTKLRVVFDGSAKAAPSDVALNQALMVGATVQNDIFVILIRFRRH
FT                 IIVFTADISKMYRQIKVVPAHSCFQRIFWRADPALPLRVLELTTVTYGTAC
FT                 APFLATRCLLQLSYDEAMRFPRAAKIIREDCYVDDILSGANSVSEALECQX
FT                 ELLGILNSAGFPVHKWSSNSPRLLQHIPEADREELVDLSDGCEGVLKTLGL
FT                 TWSPHQDEFAFVVNQDAEPSNFPTKRSILSEISKLFDPIGLLSPVIIIAKL
FT                 IMQKIWLAGLPWDTYLEGDLLQEWLQFRTSLKTVNHIRIPRCVVMPNHIAV
FT                 ELHGFSDASKLAYGAALYVRCIFPDGTASLRLVCSKSKVAPVKQVTIPRME
FT                 LLGAQLLAKLISKVLGSCDYNTSNVVLWLDSQIVLAWLKKPLTSLQVFVRN
FT                 RIEKIRQLTEPLRVQWRYISTKQNPADIVSRGMLPEALRTNELWWLGPKFL
FT                 QSADYEVEIPDELPDDGLPELRATPIAATPAVNKPNLPVLSKYSSFRRLQR
FT                 VIALVRRFILNCREKDVSKRVTNRFPTVVELRDAQDIIVQLIQRETLADEI
FT                 QRVESNECCKRIYALHPIIVNGVLRVGGRLQHSDLPLSNKHQILLPRHPVT
FT                 DLIIQAYHQELLHIGPSGLLAAIRQKFWLIDGRSSVRKITRSCVRCFRSKP
FT                 RSSSQLMGNLPSCRVTQAHPFEKAGVDYAGPVLVKEGRYKPRLVKAYIAVF
FT                 VCMATKAVHLELVSDMSSEAFLAAFHRFTSRRGLSKEIFSDNGCTFKGANS
FT                 ELHELYQLFRNQATIELLQEYCQTKEIVWHFIPPEAPNFGGLWEAAVKSTK
FT                 YHLKRTLKDAKLTFEEYATVLTQVEAILNSRPLFAISSDPSDPEVITPGHF
FT                 LVGRPLIATPEPSYNNVPMNRLSRWQYLQQLREKFWQQWRKDYLQSLQPRS
FT                 KNQRTHPNIRPGMIVLVEERDLPSQSWKMGRIITTYPGSDNLVRAVDVRIG
FT                 GTIYRRAVSRISILPIEDNCNQDCSASTDSSQPGG"
XX
SQ   Sequence 5982 BP; 1602 A; 1613 C; 1432 G; 1333 T; 2 other;
     ttttggtcca tcccgaaccg gataccggct tacagtcccc ggtagtttga agccttccct        60
     agtcaactag gcggctagtg gaagcaaccc gtcgttaccg agccgttcgg taccacaagg       120
     cttctctggt taaccagaca accagtagaa gcaaaacctt cactcccggt ccccgaagcg       180
     accagtgaag tgctccctgt cgattagtgc gctgatcggc acctttggtc aacccgtcgc       240
     taccgagccg ttcggtacca caagccttct ctggttaacc agacaaccag tagaagcaaa       300
     accttcactc ccggtccccg aagcgaccag tgaagtgctc cctgtcgatt agtgcgctga       360
     tcggcacctt tggtgaaccc gtcgctaccg agccgttcgg taccacaagc cttctctggt       420
     taaccagaca accagtagaa gcaaaacctt cactcccggt ccccgaagcg accagtgaag       480
     tactccctgt cgattagtgc gctaatcggc acctttggtg acatccgagc agcctgcaag       540
     gacaccagag gaagatctag tgtcggccaa ccgtcggtcg aagcaagtag aatccatcct       600
     ttgcgtgagg atagagtgaa aagcgttcgc gtggctttaa caacgcgaag tgtgtgtgta       660
     taaaaacctt accttggttc catcgtgtgt gcagcgagcc tttactaagm aaaaatggga       720
     ctcgatcata caccagagaa gaaggatgac gataatgact tcaagctcct ggttcaccag       780
     cgtggccaaa tcaagcggag agtcacactc atcaaccgca ctctgaagga agccgaagaa       840
     gaccctacaa aggtgactcc aacactccta aaggtcttcg caaaaaagct cgatgtacac       900
     taccaagagt acaccactgt ccatcgagag attatggaag catgcccacc atcgaagcta       960
     gaagagcaag acgaaatgct tatggccttt gatattctcc acaccgaggc gatggagaga      1020
     ctcgagcagc aatccgtgtc actgccgcaa accgctgttc cagtaaatag cacggttcat      1080
     accccgataa tggtgcaaca tcaaccactg cgagctccga ttcccagctt tgatgggaag      1140
     gtggaaaact ggccgaagtt tcagacgatg tttgaggaca ttgtcggtcg cagcaacgtt      1200
     tccgatgcca tgaagcttca tcatctggat aaggcactag tcggcgatgc ttctggatgg      1260
     ataacggcaa agatgatcca ggataacaat ttccagctga cctggaaaca actgaaggag      1320
     cgattcgaga accctcgcgt tatcgttgac acccatctag ttggactttt ggaattgaag      1380
     gctattccaa agaggaacca caaggatctc acagagctgg taaaaactgt aaaccggcac      1440
     gttggaggtt tgcagtacca aaacatccaa gtcgacgcga tgtctggttt gctgctaact      1500
     aagatcatca ctgctcggct agacgaccag acgctccaac tgtgggaaag aacgcaggaa      1560
     cacggaaaac taccagactt cgagcagatt atgaatttcc tgcaaagcga atgccaagtt      1620
     ctggaaaggt tccagaatcg accccaggca gccaccgtga aggagggaaa ccataagcag      1680
     tcgactggta agcttccaag ccagaaagca cacgcagtat catcgtcatc gacatcacat      1740
     ccctgtctcg tgtgctccga gaaacatcgc cattttgaat gtcccgcatt aaacaaaatg      1800
     gaacccgcaa aacgcagcgc caaggtgagg gagttaaacc tgtgctacaa ctgtcttcga      1860
     gctggccatc gagtaaacga atgtccatca caaaggggat gctcgaaatg ccagaagaaa      1920
     catcacacgc ttctgcacga ggatgctaaa ccagcatcgg agaagcccac accaatgata      1980
     aacacatctc cagcagtctg gtcggacacc actaccgctt cgtttaatcc ttcgtcctat      2040
     accgctgttc caaaaaaccg accgtttaaa caaacgactg ctatgctcat gactgccctc      2100
     gtgaacataa aaaacagcga caacgggaaa ataccatgcc gtgttcttct ggattccggt      2160
     tcccaagcaa gcttcatctc aaaggcaatc gctgatcgcc tatcacttgc gagaatccca      2220
     acgtttgtgc ccatcactgg agtgggtgct gtcaagacct gcgctcgtga aaagatcatc      2280
     gtggcagtcg agtcgcgatg ttctgattat tcaacaaccg ttgaatgcct ggtgattcct      2340
     aaggtaacag gaatcatccc ttcgactcag ctggatatta cgcagtggcc cctgccacct      2400
     ggcttagttc tggctgatcc tgatttccat acgcctggac gaatagacat gctgttaggc      2460
     gtatcccatt tcctacgact acttaaatca ggaaggatgc agcttcgaga agacttgccc      2520
     gaacttcaag agacgcatct tggatgggtc gtggcaggag atgtcgaaga actaaaaaac      2580
     gaccaacaaa gctgcaccgc caccaccgcc tcattgcccg agaccatgaa gaggttttgg      2640
     gaggttgagg agatcgaaga taccgatcaa cccacggagc atgaggcgtg tgaaagggtg      2700
     ttccgagaaa ctcaccaccg agacgaggac ggaagatacg ttgtcgccct gccctttcgt      2760
     gagtttccac ctcagttgaa ggtcaaccga gagctggcac tgcgtcgctt tctctcactt      2820
     gagcgacgta tgaagaagga ctcctctctg aagcagcaat atgccaaatt catcgacgac      2880
     tacgaagctc tcggtcactg ccatgagatc agggaagatc ttgacgaacc aaacaaagcc      2940
     tgcttctaca tgcctcatca tgcggttcta cgaccatcta gctccagcac caagctccgt      3000
     gtggtcttcg atggatctgc taaggccgct ccatctgatg tagctctcaa ccaagccctg      3060
     atggtgggag cgactgtgca gaacgatatt ttcgtcatcc tcatccgatt ccggagacat      3120
     atcatcgtct tcactgccga catatccaaa atgtatcggc agatcaaggt ggttccagcg      3180
     cactcgtgct tccagcgaat cttctggcgt gctgatccag ctcttcctct tcgcgtattg      3240
     gaattaacaa cggtgacgta tgggacagcg tgtgccccat tcctcgcaac tagatgcctg      3300
     ctgcagctga gctacgatga agctatgaga ttcccaaggg ctgccaaaat catccgagaa      3360
     gattgctacg tcgacgacat tctgtctgga gcaaacagcg tatcagaagc tctcgagtgt      3420
     cagascgagc tccttggcat cctgaattcc gctgggtttc ctgtccacaa atggagctcc      3480
     aactcaccaa ggctgttaca gcacatccct gaagctgacc gagaggagtt ggtagatctg      3540
     agcgacggct gcgaaggagt actgaaaaca ttaggactga cttggagtcc acatcaagat      3600
     gaattcgcat tcgttgtcaa tcaggatgca gaaccgtcga actttccaac caaacgatcc      3660
     atcctgtctg agataagcaa gctgttcgac ccgatcggcc tgctttcacc agtgatcatc      3720
     atcgccaagc tcattatgca aaagatttgg ttggcgggac tcccatggga cacctacctc      3780
     gaaggagact tgttgcagga gtggctgcaa tttcggacat cactgaaaac cgtaaaccac      3840
     attcggattc ccaggtgcgt cgtgatgccg aaccacatcg ctgttgaact tcatggattt      3900
     tcggatgcat ctaagttagc ctacggagca gcgttgtatg tgcgttgtat cttccctgac      3960
     ggaactgcaa gtcttcgatt agtttgcagc aaatccaagg ttgctcctgt gaaacaagtc      4020
     accattcccc gaatggagct gctgggagct cagcttctgg cgaagttgat ctccaaggtc      4080
     ctgggatcct gcgactacaa caccagcaat gtagtcctct ggctggatag tcagatcgtt      4140
     ctcgcttggc tgaagaaacc gcttacatcc ctgcaagtgt tcgtgcggaa ccgcatcgaa      4200
     aaaatccgtc aactcaccga accgttgaga gtacagtgga ggtatatctc aacaaagcag      4260
     aatccagcag acattgtgtc ccgcggtatg ctgccagagg ccttacggac aaacgaactt      4320
     tggtggttgg gcccaaagtt cctccaaagc gcggattatg aagtagagat tcctgatgag      4380
     ttacctgatg acggccttcc cgaattgaga gcgacaccca tcgctgccac gccggcagta      4440
     aacaaaccca acttacctgt cctttcaaag tacagctctt ttcgaagact ccagcgagta      4500
     atcgctttag ttcgacgctt catccttaac tgccgtgaga aggacgtttc gaagcgtgtc      4560
     accaaccgtt ttcccactgt tgtggaactt cgagacgccc aggacatcat agtccaactt      4620
     attcagcgtg aaacgctagc tgacgaaatc caacgagtgg aaagcaacga atgttgtaaa      4680
     cggatttacg ccctgcaccc gataattgtc aacggagtcc tgcgtgtagg cggaagatta      4740
     cagcattccg acctcccgct gtccaataaa catcagatcc tgcttccaag gcatccagtt      4800
     accgatctca tcatacaggc gtatcatcaa gagcttctac acatcggacc atccggatta      4860
     cttgcagcca ttcgtcagaa gttttggctt attgatggac ggtcatctgt tcgaaagata      4920
     acaagatcct gtgtccgctg cttccgatcc aagccacgaa gttccagcca gttaatgggc      4980
     aaccttcctt catgccgagt aactcaagcg catccattcg agaaggctgg agttgattac      5040
     gccggtccag tactcgtcaa ggagggccgg tataagcctc gccttgttaa ggcttatatt      5100
     gccgttttcg tgtgcatggc aacgaaagca gtccatctag aattagtctc ggatatgtcg      5160
     agcgaggcct tccttgcagc gttccatcgg ttcaccagtc ggcgagggtt aagcaaggaa      5220
     atcttttcgg acaacggatg caccttcaag ggagccaatt cggagctaca cgagctatac      5280
     caactcttcc gaaaccaagc aaccattgag ctacttcagg aatactgcca gacgaaggaa      5340
     atcgtatggc atttcatccc acccgaagct ccaaattttg gaggactttg ggaagccgct      5400
     gttaagagca ccaagtatca cctcaagaga acactgaagg acgccaagct aaccttcgaa      5460
     gagtacgcta cggtactgac ccaagtggag gcgatcctga actcacgacc gctgttcgct      5520
     atttcctctg atccttcgga cccagaggtc attacgccag gacacttcct ggtgggtcgt      5580
     cctctgattg caaccccaga acccagctac aacaatgtac cgatgaatcg attgtcccga      5640
     tggcaatacc ttcaacagct acgagagaaa ttctggcaac aatggaggaa ggactacctg      5700
     cagagcctgc agccccgcag taaaaatcaa cggacacatc ctaacatccg ccctggaatg      5760
     attgtgctgg ttgaggagag agatctgcca tcacaatcct ggaagatggg caggatcatc      5820
     accacatacc ctggatcaga caatcttgta cgagccgttg atgtcaggat cgggggaacg      5880
     atttatcgtc gagctgtttc ccgaatttct atcctgccta tcgaagacaa ctgcaatcag      5940
     gattgcagtg cttcaacgga ttcttcgcag cccgggggag ca                         5982
//
ID   BEL-3_AnFu-LTR repbase;    DNA;    INV; 566 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-566
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 709-709 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 566 BP; 174 A; 155 C; 115 G; 122 T; 0 other;
     tgttcgacac caacacactc aacacacgag acaccgggcg caagagtgtg tgtgaaggct        60
     ttagaaacca cacctactgc atagtcacac caccgacgcg cacgaacaat cccgaacgca       120
     ggatgaaccc cgacccgaac gcaggatgaa ccctgacccg aacgcaggat gaaccctgac       180
     cgatgattag tacgcaaagt aatcatcgcg cgcgcaatga tgcggcaacc ttttaaaatc       240
     cagatttttc tggatttatc ttctggaagg atagatcttt ctaaatcttt ctggaaggat       300
     gtaaataaac attttggcta ctataaaagg acgattagat cctcgtagcg gcatcagttc       360
     aaaccaaacc ggcttcagtt ccatatcgaa ccggctacag ttcagttcca aaccgaccct       420
     gtaagagttc caatctgacc cggcaaacgg tcaataaagt gaaaataaag ttcctaggtt       480
     aaagttagaa aaggtgtttc tcttcctgct ccaaagggaa accaaattcc tcctccccct       540
     cttgaggcaa ccccggcgcc tcaaca                                            566
//
ID   BEL-3_BTa-I repbase;    DNA;    INV; 5601 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5601
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 591-591 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(197..2914,2898..3623,3627..5471)
FT                 /product="BEL-3_BTa-I_1p"
FT                 /translation="MAGDQDSSGKVNPGTPKSRESSPAHLAELAALKADRE
FT                 RIFSATQSIADIFTSELSEKNYRDHERSLLRIQKLQADFDAIQSAVLKANV
FT                 YVVKDDKVPVTAVQKSYDELVRSLEKIYQQKSRRPETSNGDNAVGGVRLPR
FT                 LELPTFSGDYSEWTSFYNLYKATIHDNEKLKPVEKLHYLTSKLRGEALELI
FT                 KNIEAEEDQYAVAWDLLIGRYQNTRKHISHHFFGLLDMPFINSDKDIPNAL
FT                 TQINKHKHALRALGYDSKDYGPMVVAVVLRKLSPYHKKRFEDSRTDSTVYP
FT                 TLEDVMNFLEKENAKIDDVSSKRGEKSSNDNRSQKKALYVGTNSRSRSNAN
FT                 QAEPNKSAWRKGKGSSKSQNSSGKRRNESEISNSDCPCCQEKHPLFLCAQF
FT                 KAKKTEDRRKIVESLKRCVNCLSPGDCTSNSCKSSRRCYVCDEMHHTLLHR
FT                 DKNYSMGQEDKGSSKKVMMGTKKSTKATVMFATVLVRVKTHNSSKIVRAVL
FT                 DSAAQGTFITTECTHAIGLPIVQGAGAIQGISSLPSSTRGTATVTLSSVDN
FT                 KVFAREHELIILDKITDFTPSTFIHDDVQHLVRGLPMADPEWNQPGPVDLL
FT                 IGADLFPVLIIGKPRPLGTNMPYLIETRLGHVLMGSAPTQLHPPMVLMAEL
FT                 EQGSIAQLSKDIQNLWQIETIPSREPTSPPDDPAEISFRENVERLPNGQFS
FT                 VRLPFAKPPSALGESYPQALRRFLALERRFKHQPEFHKLYVEFMDEYQKNG
FT                 VMTLAPDNVMEGSHCFLPHHGVIKETSSTTKLRVVFDASAKTSTGESLNSV
FT                 LHTGPSLLKDIRDVLMGFRRHKVVFSCDIRQMYLQIALHPEDRRYHLVLWR
FT                 PNKEAPVQIYQLNRVTFGVGSSSFLSSRSLIELATLYKDRYPRASKLILEN
FT                 IFFWRTFSDDVISGDRTVELTRSLIEELIALLKEGNFALRKWTSNDSKVLE
FT                 GIADEDLEVPFTWEDPMTSSFSMLGLHWLPRPDAFSYRVDQPIRATTKRAV
FT                 LSAIAKIYDILGWVSPVTFLAKTYMQQLWLLKLGWDEPLPGGFQTKWDKFM
FT                 LALSSLRQVRIPRLLALEESLVQLHAFCDASEAGYATCIYIRTNEPPHDTN
FT                 LVTARTRVAPLKKISLPRLELCGATVLADLTDYVTKQLDPYIISYNISGIH
FT                 AWTDSKIVLQWIQTPSYKLKTFVANRVSHIQELLSNVIWHHVPSKDNPADC
FT                 ASRGLLASELLNQEIWWKGPTWLREDSSQWPAAPLPLATDSVPESKNLAVL
FT                 LVSKPIQTFSKYSSWTRTKRVLAYILRAITPKKSRCGGELTMGELKKAELQ
FT                 LFRKVQEDCFQDDLLKLKKIQDGVNILCAKPVQTLSPYLDEDGLIRVGGRL
FT                 KNADLAEGERHPILLSGKHHLTQLLIREYHKDLDHPGTQTLQSLLTRQFWI
FT                 TGARRAIQHCVHQCLKCFRARPRNSAPLMGDLPAPRVTPSSPFTHTGMDFA
FT                 GPFSVKTYNLRSARTVQSYICIFVCFSTKAVHIESVHDLTSNSFIAALRRF
FT                 TARRGCPTDLYSDCGTNFVGADNALKKLISQESNDLSEHALARGIKFHFNP
FT                 PAAPFQGGLWERAVRSMKEHFKRIVGDQKLQMDEFQTVLCRIEAILNSRPL
FT                 TPMSNDPNDLEVLTPGHFLIGRPVVSPPEEEHGDTPLPRLKRWKYVEALSQ
FT                 QLWKRWCSEYLQTLQKRNKWLKTSTPLKEGDLVLIEDPQLPTLCWKRGRVL
FT                 QTFPGKDGQVRVATVRTPTGELKRPVLKLFRLPAEHSSPTINC"
XX
SQ   Sequence 5601 BP; 1600 A; 1324 C; 1263 G; 1414 T; 0 other;
     tggtgccgaa acccgggaac tattcgttga atagttctct gtacgaatct taaatttagc        60
     tctcccaact aaattttatg ctatttaatt ttcatccaag aaaatttcat tctacttaat       120
     tttcctaaga aaattactca actaaaattt tcaggaaaaa tcattcagct aaatttttct       180
     gaaaaaatta tttgaaatgg cgggtgatca agactcctca ggtaaggtga atccaggcac       240
     accaaaatcg agggaaagtt ctccagcgca cctcgccgaa ctagcagcgc tcaaggcgga       300
     tcgagagaga attttttctg ctacccagag tatagcggat attttcacga gtgaattgag       360
     cgaaaaaaac tacagggatc acgagcgatc cctcctaagg atccagaagt tgcaggccga       420
     cttcgacgca atacaatcag ccgtcctaaa ggcaaatgta tacgtcgtga aggatgataa       480
     ggtacctgta actgctgtcc agaaatctta tgacgagctg gttcgttcat tagaaaaaat       540
     ctatcaacaa aaatccagga gaccggaaac atcaaacggt gacaatgccg ttggcggcgt       600
     acggctccct aggttggaac ttcctacttt tagcggagat tattcagagt ggacgtcctt       660
     ttacaactta tacaaggcga ccatccatga taatgagaaa ctgaagccag tcgagaaact       720
     gcattattta acttctaagc tcaggggtga ggccttggag ttaataaaga atatagaggc       780
     cgaagaagat caatacgctg tcgcctggga tttgctgata ggaagatacc aaaacacaag       840
     aaagcacata tctcatcact tttttggact gcttgatatg ccattcatca attctgataa       900
     ggacatacct aatgccttaa ctcagatcaa caaacataag catgcgcttc gagcattagg       960
     ctacgactcg aaggattatg gacctatggt ggtagcagtc gttttgcgga aattgtctcc      1020
     atatcacaag aagcgttttg aagactccag gacagattcc actgtttatc caacgttgga      1080
     ggatgtcatg aacttcttgg agaaggaaaa tgcaaaaatc gatgatgtct catctaaaag      1140
     aggtgaaaaa tcaagcaacg ataatcgatc acaaaagaag gccttgtatg tcggaacaaa      1200
     ttctcggtca aggagcaatg ctaaccaagc agagccaaac aagtcggcat ggcgcaaggg      1260
     caagggatca tccaagtccc aaaattcaag tggtaaacga cgaaatgaat ctgaaatatc      1320
     taattctgat tgtccctgct gtcaagaaaa gcatccatta tttttatgcg ctcaatttaa      1380
     ggccaaaaag actgaagatc ggaggaaaat cgtcgagtct ctgaaaagat gtgtaaactg      1440
     tctctctcca ggagactgca cgagtaatag ctgcaagagc tctagaaggt gttacgtctg      1500
     cgatgagatg catcacactc tgctacaccg agacaagaat tactccatgg gtcaagaaga      1560
     taaaggcagt tccaagaagg tgatgatggg cacgaaaaaa tcaacgaagg ctacagtaat      1620
     gttcgccacc gtcctcgtaa gagtaaaaac tcacaatagc tccaaaattg tgagagcagt      1680
     tctcgactcc gctgcacagg ggacgtttat tacgaccgaa tgcactcatg ctatagggtt      1740
     gcctatcgtc caaggggcag gagccatcca aggcatatcc agtctcccaa gttctactcg      1800
     tggtacggcc actgtgactc tgtcatctgt agacaataaa gtgttcgcta gggaacacga      1860
     actaatcatt ttggataaaa tcactgattt tactccttcc acgttcatcc atgatgacgt      1920
     gcagcactta gtgcgcggtt tacccatggc tgacccagaa tggaaccagc ctgggcccgt      1980
     agatctttta attggtgcgg acctctttcc tgtcttaatt attggaaaac cgcggcctct      2040
     gggcacaaat atgccctatc ttattgaaac gaggttggga catgtgttaa tgggatctgc      2100
     tccaacgcaa ttgcatcctc ccatggtgct catggctgag ttggaacaag gttccattgc      2160
     ccagctcagc aaagatattc aaaatttgtg gcagatcgag acgatacctt ccagagagcc      2220
     aacgagtcct cctgatgacc cagctgaaat ttcgtttcgt gagaatgtag agcgtctgcc      2280
     caacggacaa ttctcagtac gactgccgtt cgcaaagcct ccgagcgcgc tgggagagtc      2340
     ctatccacag gcacttcggc gttttctggc tttagaaaga cgtttcaagc atcagccaga      2400
     gtttcacaag ctatatgtgg aattcatgga cgaatatcag aagaacggag ttatgactct      2460
     tgctccggac aatgttatgg agggttcaca ctgctttctt cctcatcatg gcgttataaa      2520
     ggagactagt tccactacga aacttagagt agttttcgac gcaagtgcaa agacaagtac      2580
     aggcgaatcc ttgaacagcg tgctccatac tggaccttct ctactaaagg atatcagaga      2640
     cgtactaatg ggattccgaa gacacaaggt tgtgttctcc tgcgatattc ggcagatgta      2700
     cttacaaatt gcgctacacc ctgaagacag aaggtaccac ctggtgttat ggcgtcctaa      2760
     caaggaagct cctgtgcaga tctatcagct aaaccgggtc accttcggtg taggcagctc      2820
     gtcgttcttg tcgagcagat cgttaataga gcttgccact ctttacaaag accggtaccc      2880
     cagagcatcc aagttaattc tggagaacat tttctgatga tgtgatctca ggggatagaa      2940
     ccgttgaatt aactcgatct ctcatcgagg agttaattgc gctactcaag gaaggcaact      3000
     ttgcgctcag gaagtggacc agcaacgact caaaggttct ggaaggcatt gccgacgaag      3060
     atttagaggt accatttacc tgggaagatc ctatgacttc ctcattttct atgttgggtc      3120
     ttcattggct cccaagacca gatgcatttt catatcgagt agaccaaccc atcagggcta      3180
     ccacgaagag agcagttctg tctgccatag ccaaaattta cgacatcctt ggctgggtat      3240
     cacctgtgac atttctcgcc aaaacataca tgcaacagct atggttgctc aagttgggct      3300
     gggacgaacc cctgccaggg ggattccaga ccaaatggga caaattcatg cttgcgctct      3360
     catccttaag gcaagttcga attccaagat tattggcatt agaagaatcc cttgtgcaac      3420
     tacatgcctt ttgtgacgca tctgaagccg gttatgcaac ctgcatttat atcaggacca      3480
     atgagccacc acatgacacg aacttggtaa cagcccgtac cagagtagct ccgttgaaga      3540
     agatctctct gccgcggctt gagctctgcg gagcgactgt gttggcggat ttaacggatt      3600
     atgtgacaaa gcagcttgat ccataatata taatatccta taatatctct ggcattcacg      3660
     cctggactga ttctaaaatt gtgctccagt ggatccagac cccatcttac aagctgaaga      3720
     catttgtggc aaatcgggtc tcccatatac aagagctctt atccaatgta atttggcatc      3780
     atgtcccttc taaggacaac ccagccgact gtgcgtcacg tggacttcta gcgtccgaac      3840
     tcttgaatca agaaatctgg tggaaggggc caacatggct tcgagaagac tcctcacaat      3900
     ggcctgcagc tccgttaccg ctcgcgactg actcagttcc tgagagcaag aatcttgcag      3960
     tactactggt ctccaagcca atccaaacct tttctaaata ttcttcttgg actaggacta      4020
     agcgagtctt ggcttacatc cttcgcgcaa tcactccaaa gaagtcacga tgtggaggag      4080
     agttaaccat gggagaatta aagaaggctg agctgcagct attccggaag gttcaagaag      4140
     actgctttca ggatgactta ctcaaactga agaaaattca agatggagtg aacatcttgt      4200
     gcgctaagcc ggttcaaact ttaagtccgt acttggatga agatggccta ataagagtgg      4260
     gaggtcgcct taagaatgca gacctcgctg aaggtgaacg gcacccgatc ctgttatccg      4320
     ggaagcatca cctgactcag ctgcttattc gcgagtatca taaggatctc gaccatcctg      4380
     gaacccaaac tctacaatct cttctcacaa ggcaattctg gataaccgga gcccgaaggg      4440
     caattcaaca ttgcgttcat cagtgtctca agtgcttccg agcgagacca agaaacagcg      4500
     caccgctaat gggcgacttg cctgcacctc gtgtaacgcc cagctcccca tttactcata      4560
     ctggcatgga cttcgcaggc cccttttctg taaaaaccta caatcttaga tccgcccgga      4620
     ccgtgcaaag ctacatctgc atattcgttt gcttctccac gaaagctgtg cacatagagt      4680
     ctgtacacga tctaacatct aactcgttta ttgcagctct aagaagattc acagcccgtc      4740
     gagggtgtcc cacggacttg tacagtgatt gcggaactaa cttcgtgggc gcggacaacg      4800
     ccttgaagaa attaatttcc caagagtcga atgatctaag cgagcatgct ctagcaagag      4860
     gcattaaatt ccattttaat cctcctgcgg ctccgtttca aggaggactt tgggaaagag      4920
     cagtgcgtag catgaaggaa cacttcaaaa ggattgtcgg agaccaaaag ctccagatgg      4980
     atgaatttca aaccgttttg tgtcggatcg aggccatctt gaactccaga cctcttacgc      5040
     caatgtcaaa tgacccaaat gacctcgagg ttctgactcc tggtcatttc ttgataggca      5100
     ggcctgtagt atcccctcca gaggaagaac acggggacac tcctcttccc aggctcaaga      5160
     ggtggaagta cgtggaagct ctctctcagc aactttggaa aagatggtgt agtgaatacc      5220
     tgcaaactct acaaaagagg aataaatggc ttaagacatc aactccgctg aaagaaggtg      5280
     atctcgtgct cattgaagat cctcaactcc ccaccctttg ctggaaaaga ggtcgggtgt      5340
     tgcagacgtt tcctgggaaa gacgggcaag ttagagtcgc caccgtgcgt actcccaccg      5400
     gcgagctcaa gagacccgtg ctcaagctat ttcgtttgcc cgcggagcat tcatcaccca      5460
     ccattaactg ctagttgtta agtctctatc tcttatttca tagtcttata cagagtctcc      5520
     aagctattta aataatgtta tttctttttc tttttctcct ttcctaatga aacccccttt      5580
     gtggtttcat ggcgggcggt a                                                5601
//
ID   BEL-3_BTa-LTR repbase;    DNA;    INV; 682 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-682
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 569-569 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 682 BP; 141 A; 228 C; 164 G; 149 T; 0 other;
     tgtttatacc agcctcctcc gtctgcaaat gcaaattttt aaattataga atttttgggg        60
     catttttttc tatttcaatt ttctgagaaa cctggcaatc agcttggatg ccagaatcgc       120
     gcgcaccgcc ggaccgttcg ctgtgtactg cttatgcaac cagtcccgcg tcccacgcac       180
     gcatcacgtg ggcacgcgtc gcgtcgcgcg ctctaatcac gcggccgcgc gtcgcgtcgc       240
     ggctataaaa ggcgagcggc cgcgcgtctc atcaccagtc gcagctcaac cgcaagaaga       300
     gtagcaacca cggtaagtac ctccaagtac atacagctct catccatcgg cgcgctggtc       360
     catctctaac cgagctctcc acggctccaa cgacttgcgg gtcttccatg cccacatcgc       420
     ccggagcgct accgcactgg gccagcccga ggagccgtct cttggggtct cttcggcgtc       480
     tccaagcgca aaaaccaacg tggacttcca tgtccagatc gcccggagtg ctatcacact       540
     gggccagccc gaccgagcta tctcgtgggg tgttctaagc gcttccaagc gcacaaacca       600
     ggtcctctac aggacagctg gcactcgtcc gctctttctc aggaccagcg ctagccgact       660
     ctaaaagtcg cactcctttt ca                                                682
//
ID   BEL-3_CoFl-I repbase;    DNA;    INV; 6095 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6095
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2310-2310 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..876
FT                 /product="BEL-3_CoFl-I_1p"
FT                 /translation="MEVVVVDTVPTIRHRCWPRRSRAAINACLAGTRVINS
FT                 VHTVAAAVATEPAVQQLCSATAEIRPYGCRCDALFDAIRTSESEAFAAAIV
FT                 SRDQALAVSSSAAAAMWASCRARPPRAAELLRFAGAGGRRRGTGFEACVAC
FT                 VRVGTRVVYARPFWHPRPFVVPLSHSFSFTLLLSVLSAVDAPRVDSCVASG
FT                 DDMAPPLMARRQDMLRANVKLVIAFSGRTTTGRACSAPRVPSPASSAGSHG
FT                 TSRRSTPRTGA"
FT   CDS           696..2105
FT                 /product="BEL-3_CoFl-I_2p"
FT                 /note="DUF1759."
FT                 /translation="HGPAAHGPEARHASCKRQASDRFFRSNDDWTSLLGSQ
FT                 SALAGVISRFARDVEKIDPPNWSLGLVEVRLELLDGYWNTFQANHVSLLES
FT                 PPPEKLEFLDQMYSTAESDYIASRSRLYNARNTLTPLPGPGGADLDRHNSR
FT                 HGARLPKISIPSFSGKREDWESFRDLFRALVHDDKQLTDVERLFYLKSLVD
FT                 GDAKAALDTVQTIGANYPTAWALLEARFEHRRLLIHDHITALRNIKSLKEE
FT                 SARGLQGLLDTLGKHRDQLEALGRPVSQWDDWIVSCAMTGMDPTTRRAWED
FT                 EIERLETAGTDATAEVATFAALTTFLRRQCRALSSVEASRPARSANTASMR
FT                 SPALPFPGRNFRALATSGSLPPCPSCRESHYLGHCAQFQGLDAQSRRRMVY
FT                 QGQLCFNCLRPGHAVKFCPSRSVCQQCREPHHSLLHESNHRRKPESDQRPS
FT                 SPKKPKVDSAGPSATDSQHQGPPSS"
FT   CDS           2109..6062
FT                 /product="BEL-3_CoFl-I_3p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="LAVLPTALVQLTGPTGRRVAGRALLDACSEVTLISIR
FT                 LAQXLGAALEVNEASIHGVGGGLTIPSRTRAHLRLETGEHAPPIHLTALCL
FT                 PRLGLTSPSAPLHPAVMRQWLDLEPLADPAFGTPXRVDILLGVDVYHRLIE
FT                 PGYVQRDELVGQRTALGWTLVGRAPGLGSNALIAGTTLHTNTQSPWDQELA
FT                 AQLQRFWEIEEVPHVSRRAPEDVECERIFADYHRADDGRYIVRLPLKHDAV
FT                 RLLGDSLQGATAGLRSLHRRLQRTPETASEYARFMAEYIALGHMKPLTDDQ
FT                 LAASHRPVHYIQHHGIWQHGDQGRKLRVVFNASSPTSSGYSLNDVLHAGPR
FT                 LQTALPSELLRWRRHRIAFCTDVRMMFHQILIDERDVDLQRILWSSNPKQP
FT                 PTYYQLLTVTYGASCSPYLSLRVVQQLCEDDGRRWPEAVPVVMNDRYADDV
FT                 LSGADDIGSAKRLRDQLIGLLQAGGFPLRKWVDSTPELLEDLPEDVRLRPT
FT                 WDQLSVGGLVSELGVGWDPPSDFFRSTPPVVESQTTKRSMLAALAGLFDPC
FT                 GWLAPIVLNAKLLLQDLWRARLDWDENVPSSMTRRWTAFTAELQAISGFSL
FT                 PRWIGMSPSSNVQLHVFSDASRRAMAAVVYSWLRSSDGPALCHILLARTKL
FT                 APIRAHKPMTEPASRMTIPRLELRGALIAAKLLRSAASELGVAIEHCHARC
FT                 DSQIVLHWIRSDQPANNVLVDNYVAQIQEVLPPSAWRYVPSQSNPAGLATR
FT                 SADMSGLRQQPLWWRGPTWLAQDDKSWPQETLPPPTPTLSLCCAFRAPESD
FT                 LLQLFSSLRAVLGLLVRVRRWVRHRLQRMPTRSVLSPLTPSEVQDAFLACV
FT                 RLSQSMTFGDELALLRKRERLPKRSPLTSLAAFLDADGVLRVGGRLDHSSL
FT                 SYGEKHPPILSGTSPLARLVVSWAHARALHGGYRVTSAYVSRRAWILGGPR
FT                 RIKAHIRGCVICARLQARSSSQLMAPLPASRVTPSRAFGRTGVDYAGPFSV
FT                 LTSKGRGIRTTKGYIAVFVCMTTKAVHLELVGDLSAANFLGALTRFTGRRG
FT                 RPSELWSVNATCFRRADLELREALQGAEFNWDLVAGTLASQGVSWQFIPPG
FT                 APHFGGLWEAAVKSTKSHPRRVLGSRHLTYEEFSTVLVGIEAVLNSRPLTP
FT                 LSGDPSDLEVLTPGHFLIGAPVDSIVEATPAAENLDPLTHWELVKAVRAQF
FT                 WTRWGREYLNTLQQRPKWSAVRRNFAVGDLVVLLDPTLLQSSGRWPLGRIT
FT                 RIHPGSDGLVRAAAVKTATGEYVRPIVKLARLPVAPADSSLPATDDRGTPP
FT                 ASAGGD"
XX
SQ   Sequence 6095 BP; 1043 A; 2005 C; 1749 G; 1295 T; 3 other;
     tttggtcctt cgagccggat cccgaggaga agagcagcca acgccgcagc tagggtggtc        60
     acagtctgcg attcgactta cacagcgtaa tgtaagtaca gtttaaagaa atgttgtgta       120
     atggaggtcg tcgtggtcga cacagttccc acgattcgac acaggtgttg gccgcgacga       180
     agtcgtgccg ccattaacgc ttgccttgct ggcactcgcg ttatcaacag cgtgcacacg       240
     gtggctgccg cggtcgccac agagcccgcg gtccagcagc tgtgctcagc cacggcagag       300
     ataaggccgt acggctgtcg atgcgacgct ttgttcgacg ccattcgaac gtcggaaagc       360
     gaggctttcg cggccgccat tgttagccgc gatcaagcgc tcgcggtgtc ctcatcggcc       420
     gcggccgcca tgtgggcctc gtgtcgcgcg cgtccgcctc gcgcggcgga gctgttgcgc       480
     ttcgctggcg cggggggtcg acgccgaggg acaggcttcg aagcttgtgt agcttgcgtg       540
     cgcgttggca cgcgcgtggt ctacgcacgt cccttctggc atcctcgccc tttcgtggta       600
     cctctctcac actctttctc tttcactctc cttttatctg ttttgtctgc cgtcgatgcg       660
     ccgcgcgtcg acagctgtgt cgcgtctggc gatgacatgg ccccgccgct catggcccgg       720
     aggcaagaca tgcttcgtgc aaacgtcaag ctagtgatcg ctttttcagg tcgaacgacg       780
     actggacgag cctgctcggc tcccagagtg ccctcgccgg cgtcatcagc cggttcgcac       840
     gggacgtcga gaagatcgac cccccgaact ggagcctagg tctcgtggaa gtaaggctcg       900
     agctgctcga cggctactgg aacacgttcc aggccaatca cgtgagtctc ctggagtcac       960
     cgccgcccga gaagctggag tttcttgacc agatgtactc gacggcagag tcggactata      1020
     tcgcctctcg atcacgcctc tacaacgcaa gaaacaccct cacgcctctc cctggcccgg      1080
     gcggcgccga cctggaccgt cataactcga gacacggagc ccgcttgccc aagatcagca      1140
     tcccttcctt ctcggggaag cgagaggatt gggaaagttt ccgggacctc ttccgcgcgc      1200
     tcgtccacga cgataaacag ctcaccgacg tggagaggct gttttatttg aaatccttgg      1260
     tggacggaga cgccaaggcc gctctcgaca ccgttcagac catcggtgcc aattatccaa      1320
     cggcttgggc cttactcgaa gcgcgtttcg agcaccgccg tcttctcatc catgatcata      1380
     tcacggcgct ccgtaacatc aagtctctga aggaagagtc agctcgaggg cttcagggtc      1440
     tcctcgacac cctgggaaaa catcgagatc agctggaagc tctgggtcgc cctgtgtctc      1500
     agtgggacga ctggattgtc tcctgcgcga tgactggcat ggatccgacg acccggcgcg      1560
     cgtgggagga cgagatcgag cgactggaga ccgctggcac ggacgccacg gcggaagttg      1620
     ccacttttgc tgccttgacg actttccttc gccgacagtg ccgcgcgctc agctccgtcg      1680
     aggcctctcg ccctgctcgt tcagccaaca cggccagcat gcgctctccg gccctcccgt      1740
     ttcctggacg aaactttaga gcccttgcca ccagtggctc gctgccgcca tgcccgtcgt      1800
     gcagagagtc gcactacctg ggtcactgcg cgcaatttca aggccttgac gcgcagtccc      1860
     ggcgacgcat ggtctatcaa gggcagctat gctttaactg cctgagacca ggccacgcag      1920
     taaagttctg cccttcacgg tccgtctgcc agcagtgcag ggagccccac cacagtctgc      1980
     tgcacgagag caaccatcgg cgcaagcctg aatcggatca gcgtccctct tcgcccaaga      2040
     agccaaaagt cgacagcgcg ggcccgtccg ccaccgactc acagcatcag gggcctccat      2100
     cgtcctgact cgccgtactt ccgaccgctc ttgtccagct aaccggtccc accggccgac      2160
     gagtcgctgg tcgagctctc cttgatgcgt gctctgaggt tacactcatc tccatccggt      2220
     tggcccagsa gctcggcgca gcgctagaag tcaacgaggc gagcattcat ggggttgggg      2280
     gagggttgac catcccttcg agaacccgag cgcatctacg ccttgaaact ggagagcatg      2340
     caccgccaat ccacctgaca gcgctctgcc tgccgcggct cgggctcacc tctccgtctg      2400
     cccccttgca cccagccgtg atgagacagt ggctcgatct tgagcctctg gccgatccag      2460
     cgtttggcac acctckccgt gtagacattc tgctcggagt cgacgtttac caccgcctca      2520
     tcgaaccagg ttacgttcag cgtgacgagc tcgtcggaca gcgcacggct cttggctgga      2580
     ctctcgtcgg ccgtgcccct ggcctgggct cgaacgccct catcgcaggc acaactctgc      2640
     acacgaacac ccagtcgccc tgggatcaag agctggctgc gcagctccag cgattctggg      2700
     agatcgagga ggtgccacat gtcagccgcc gagcgcctga ggatgtggaa tgcgagcgaa      2760
     tcttcgccga ttatcatcgc gctgacgacg ggcgttacat tgtgcgactt ccgctgaagc      2820
     atgacgctgt gcgcctcctt ggtgacagtc tgcagggcgc caccgctggc ttgcgctcgt      2880
     tgcatcgtcg gctgcagcgg actcccgaga cggcttctga gtacgcccgg ttcatggcag      2940
     agtacattgc cctcggtcat atgaagcccc ttactgatga ccaactcgct gcatcgcacc      3000
     gtccagtgca ctatatccaa catcacggca tttggcagca cggtgaccaa ggtcgcaaac      3060
     tgcgcgttgt tttcaacgcg tcgagcccga cttccagtgg ctatagccta aacgacgtgc      3120
     tccatgctgg tcctcggctc cagacagctc tccccagtga gctcctgcgt tggcgtcgtc      3180
     accggattgc gttctgtact gacgttcgca tgatgttcca ccagatcctg attgatgaac      3240
     gcgatgtcga cctgcagcgc attctgtgga gctccaaccc aaagcagcca cctacgtact      3300
     accaacttct caccgttacc tacggtgcct cgtgctcccc gtacctgtca ctacgggttg      3360
     tacagcagct gtgcgaggat gacggccgcc gctggcccga ggccgtcccg gtggtgatga      3420
     acgatcgcta cgctgatgac gtcctctccg gcgctgatga catcggctcg gccaagcgtc      3480
     tgcgcgacca gctgatcgga cttcttcaag cgggcggttt tcctctgcga aagtgggttg      3540
     acagcacgcc cgagcttctc gaagaccttc ccgaagacgt ccgcctccgt cctacttggg      3600
     atcagctcag tgttggaggc ctcgtcagcg aactgggcgt aggctgggac ccgccctcgg      3660
     atttcttccg ttcgacgccg cccgttgtcg aatctcaaac cacgaagaga tccatgctcg      3720
     ccgckctcgc aggcttgttc gatccgtgcg gctggcttgc cccgatcgtg ttgaacgcca      3780
     agcttttact gcaagacctg tggcgcgcgc gcttggactg ggacgagaac gtaccatcct      3840
     ccatgactcg ccgctggacc gccttcaccg ccgagctgca ggccatttcc gggttttctc      3900
     tgcctcgttg gattggtatg tctccgtcgt cgaatgtcca gctgcacgtg ttttctgacg      3960
     ccagtcgccg tgctatggcc gctgttgtat attcgtggct gcggtcttca gatgggcccg      4020
     ctctctgcca catacttctc gctcgtacta agcttgcgcc catccgcgcg cacaagccga      4080
     tgaccgagcc agccagtcgc atgaccatcc cacgtctaga attgcgaggg gccctcatcg      4140
     ccgccaagct tcttcgctca gcagccagcg agttgggagt cgcgatcgag cactgccacg      4200
     ctcggtgcga ctctcaaatt gtgctccact ggatacgctc cgatcagccg gccaacaacg      4260
     tgctcgtcga caactacgtc gctcagatcc aggaggtcct gccacccagt gcctggcgat      4320
     acgtgccgtc gcaatcgaat ccggccggct tagccaccag aagtgccgac atgagtggcc      4380
     tccgacagca gcccctgtgg tggagaggcc ccacgtggct ggcccaggac gacaagtctt      4440
     ggccccagga gacactgcct ccgcccacgc ccacgctctc actctgctgc gccttccgcg      4500
     cgcctgaatc ggacctgctg cagctcttct cgagcttgcg cgccgtactg ggcctcctcg      4560
     tgcgcgttcg ccgatgggtg cgacaccgct tgcagcgcat gcccacccgt tctgtgcttt      4620
     cgccgttgac gccgtctgag gttcaggacg ctttcctggc ctgcgttcgg ttgagtcaat      4680
     cgatgacgtt tggggatgag ttggcactcc tgcggaagcg tgaacgtctt ccgaaacgga      4740
     gccctttgac ctctcttgcc gccttcctcg atgccgacgg tgttctgcgt gttggcgggc      4800
     ggctcgatca ctcatcgctg tcttacggag agaagcaccc tcccatcctc agcggaacat      4860
     cgccgctcgc tcgactcgtg gtctcttggg ctcacgcacg cgccctccac ggtggatatc      4920
     gcgttaccag cgcatacgtc tccaggcgtg cctggattct cggcgggcca cgccgaatca      4980
     aggctcacat tagagggtgc gtcatctgtg cccggttaca ggcgcgctct tcaagccagt      5040
     tgatggctcc gctgcccgcg tctcgcgtca cgccgtctcg cgcttttggt cgcaccggag      5100
     tcgattacgc cgggcccttc tccgtgctta catcgaaggg acgggggatc cggaccacaa      5160
     agggctacat cgctgtcttc gtgtgcatga ccaccaaagc cgtgcatctg gagcttgtcg      5220
     gcgacctttc cgcggccaac ttcttgggtg ctctcacccg tttcaccggt cgtcgaggcc      5280
     gaccatccga gctttggagc gtcaacgcca cctgcttccg tcgagctgat ttggagctcc      5340
     gcgaggcgtt gcagggcgca gaatttaact gggacctagt cgccgggact cttgcctccc      5400
     agggggtttc ctggcagttc attcctcctg gtgcgccaca ttttggagga ctctgggagg      5460
     ccgcggtcaa gtcgaccaag agccatccac gccgtgtgct cggttctcgt catctaacgt      5520
     atgaagagtt ctctacggtt ctcgttggaa ttgaggccgt gttgaatagc cgcccgttga      5580
     cgcccttgtc tggcgatccc tctgacctcg aagtgctcac gcctggacat ttcctcatcg      5640
     gggctcccgt cgattccatc gtcgaagcta cccccgctgc agagaatttg gacccgctca      5700
     cgcactggga gctcgtcaag gccgttcgcg cccaattctg gacgcgctgg ggccgtgagt      5760
     atctaaatac tctccaacag aggccgaaat ggagcgctgt ccgtcggaac ttcgcggtgg      5820
     gggacctggt ggttcttctt gaccctacgc tgctacagtc cagcggacgc tggcctctgg      5880
     gccgtatcac ccgcatacac cctggatccg atggactagt ccgtgctgct gccgtcaaga      5940
     cggccaccgg cgaatacgtg cggcccattg tcaagcttgc gcgtctccct gtggcacctg      6000
     cggactctag cctccctgcg acagacgatc gagggactcc cccggcttcg gcgggcggtg      6060
     actagggttt cgctcttgga tcaaggcggg cggga                                 6095
//
ID   BEL-3_CoFl-LTR repbase;    DNA;    INV; 285 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-285
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2280-2280 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 285 BP; 64 A; 90 C; 75 G; 55 T; 1 other;
     tgttcgggtt ttctcaccga ccgagcgggg acccgcgccc tgccatgcaa cgtcggtcgc        60
     tgcgctctct cccggctccc cacctcgtgc gtcaccgcgc tcggccggtg gggctcactc       120
     gtgtacgagg gctcagtgag gacagtcgca cgccacacca gagaacgaga mgaagaagac       180
     gacgactaca cgccgaagcg actatccctt gtgccttttc tttgtgtaaa gtgttgtcca       240
     gcatttgtaa gcccatacga accaataaag cagtaaaaac aaaca                       285
//
ID   BEL-3_CQ-I  repbase;    DNA;    INV; 6224 BP.
XX
AC   AAWU01000122;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_CQ_;
KW   BEL-3_CQ-LTR; BEL-3_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6224
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 159-159 (2011).
XX
DR   GenBank; AAWU01000122; Positions   91472   85249.
XX
CC   Positions [5024-5563] - Integrase core
CC   'ATACC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           693..4331
FT                 /product="BEL-3_CQ-I_2p"
FT                 /translation="MASKLFKFSGNTNGHCQLCNDADEKDKMIGCDDCQHW
FT                 FHKSCANVPKDPPKKQEWFCPRCVTIAEKLRGSVNPIIEMMEAQKEAFRYM
FT                 SNKSTNNQVATLKEMMDAFKASLDVKNEQLENQSAMVVDNPSGEAAILQLN
FT                 KIVTRQALMDLPDFDGSYKVWPRFQSIFETTTKEGGFSDVENLNRLEKHLK
FT                 GQALFHVESLLTDHTNVPLIMKSLKEQFGNVRFLYEGYLKDALSLKNPSVE
FT                 NPQSMIDFVTSIENLVTNIKLLKQPDYLKDQRLIQDLVAKLPFNLRQQWLK
FT                 SLLEKEKAVNLLEANKLPDLESFSIWLKDHKSLATMMMSYKTGEYSQPGNR
FT                 ERFNRREKLNAHLDIKSDKRYKCFSCNETTHRNAECPVFAKMDVAKRIESV
FT                 KQNRLCFACCNFSNHNSRNCQNPRKCNIAGCKINHHPMLHETKRTPTVEKK
FT                 SENTANQVNHHDRNDSSVYYQIMPVVLSNGDKRVRVLALLDLGSSTSLLLD
FT                 DVRKELAITGTKIPLALSWTDGNVQRDENSQEITVDIEGSHGNTYELRKVR
FT                 TIGSMSLPKQSLNKDEMIKRYPYLKDINLKGYGKESPKLLLGLPHSFVIQG
FT                 LESRAGNFNQPIANRTRLGWVLHGKVSGKFPNKNFTVAFHNEIEEDEVSIN
FT                 KLMNDFFSLEGFGVKQSIKPLVSKQIERAEKIMKETLQYENGQYEIGLLWK
FT                 HDDVQFPDSYSAALTRLKGQELKMRRDPTLRTWYNNKIKEYEEKGYIRKLS
FT                 QIETITKSSRTYYIPHFSVINPNKQPPKPRLVFDAAAKTRGESLNSNLLSG
FT                 PDTNANLLGVLMRFREGRYAISGDIQEMFHQVKIRKEDQDAQRFLFRESDS
FT                 SEIDTYVMQVMTFGATCSPACAQFVKNQNALKLHENYPREVDAILNNHYVD
FT                 DYLDSFDLLEEAKEVVNNVIMIHGKAHYNIRNFVSNSNSLLNSIEESKRME
FT                 INAIKLGDDEQLYEKVLGIFWNTETDTINFKVKELQEMENPTKRNILSTIM
FT                 RVYDPLGLISNITIQGKIFMQELWKLGLEWDESIPEDLNESWNHWLTRLLA
FT                 AKNIKFPRCYSTMTNIKRRELHVFADASDKAYAAVVYLRTVSQNSDDPKSE
FT                 QIEINLVAAKARVAPNKMLSIPRLELLAAVLGTRIAENIMNELRLKIDRTI
FT                 YWSDSKTVLAWIQSDARSYNVFVGLRISEILDSTTVSQWRWVNKTIQQMKQ
FT                 RRL"
FT   CDS           4283..5983
FT                 /product="BEL-3_CQ-I_1p"
FT                 /translation="MEMGKQNNPADEATKVVTKESIWMHGPNFLKYQEENW
FT                 PVKGKRFQTNEELKPVHIIRECKIPNYSYIQIEWCSDWSRLKRAIGGIMKM
FT                 IVSKAKNMAYENTLLKEDFCEAEIVLIKKAQWDKFPSEMKSLTFELPIEKN
FT                 SSLRGLTPFLDEKGVMRSRGRLENADVLNYAAKFPIILPKDHHVSKLILKY
FT                 YHEKFYHLKLDASIASVRQKYWIIDIRATMKKVKNACQLCKNRSAQPQPPI
FT                 MAALPSYRTIPFVKPFTYAGVDYFGPVNVSIGRRVEKRWGVVFTCLITRAV
FT                 YLDLSRNLSTDAFFICLKNVQSRRGRIMQLYSDNGTNFIGANNEIKRIRQR
FT                 LASEGIEWFFNPPSAPHFGGVWERMVKEVKSILASVQETMPEDVLRGLLTE
FT                 IEYIINSRPLTHIPLESEDDEVLTPYHFLINCSGDMEPMLNDVSKGEALRE
FT                 QWKRSSQLANNYWNRWIKEYLPSLTKRPKWNQEMKPIEVGDIAITPDEENK
FT                 GKWIKCLVTDTRPGKDGIVRSVRIKTASGKYLTRPVVKLAVLDVKRKQRNA
FT                 SDDDGNKKIEMKDDKQNENL"
XX
SQ   Sequence 6224 BP; 2275 A; 1066 C; 1291 G; 1592 T; 0 other;
     ttttatggtg gctccagaga ggaaaagtac aaaactggtg atggttcaaa agtaaggacc        60
     aagtgtttgt ggaatttgcc gagttttcac aagatagtga ctcatgtgta aaaagtgaga       120
     agtagttcac tttccttcgg ccgcgaccaa cgtctaggtt gactcgtgtt catcaaaatc       180
     cgatcaagtg ccacgtgccg atcggtcgcc atcaacatac ggttggaaaa gtgcgttcgt       240
     caaaatccgg acaaatctgt tcggtcacac ccgaattgcg gataagtgtg cctggtccgg       300
     acatcgaata agtccggtta gatatcaata atcagcaact gtcgtgttca ctggaagagc       360
     acgttacaac gaagaaatcc ggtcaattag agattgcccg gtcgcattcg acatcaggtc       420
     gagcctacat gcgccaagga gtttcatcag tgaatcatca atcgaagcag atcaatctga       480
     aggaaaatct atcgtcgtgt ggacaacgag acatcgaagc atcacatcga gcatagcaga       540
     accagcaacg caacgagcat cgcaacgagc agcgcagcat cacgatcaca acgagctaca       600
     gcagaaaagt agtaagtcta caacattagc ccgtaagaag tgatctgtta ggaataattc       660
     gcaaactaca aaaaagagtg taaagaagca atatggcttc aaaattgttc aagtttagtg       720
     gcaatacgaa tggtcactgt cagctttgta atgatgctga tgaaaaggat aagatgatag       780
     gttgtgacga ttgccaacat tggtttcaca aaagttgtgc aaatgttcca aaagatccac       840
     ccaagaaaca agaatggttt tgtccaagat gtgtgaccat cgcggaaaaa ctcagaggaa       900
     gtgtaaatcc aattatcgaa atgatggaag cacaaaagga agcattccgt tacatgtcca       960
     ataagagtac taacaatcag gtagcaacct taaaagaaat gatggatgca tttaaagcat      1020
     cattggatgt taaaaatgag caactcgaaa atcaatctgc aatggtagtt gataatccaa      1080
     gtggggaggc tgcaatcctc caacttaaca aaattgtgac cagacaagcc ctcatggact      1140
     tgcctgattt cgacgggtct tataaggtat ggcccaggtt tcagagtatc tttgaaacaa      1200
     ctacaaaaga aggaggcttc agtgatgtgg aaaatctgaa ccgcctagaa aaacatttaa      1260
     agggacaagc cctatttcac gtagagtctc tgttgacaga tcatacaaat gttccactaa      1320
     ttatgaaatc cttaaaggaa cagttcggta acgttcgatt cctttatgaa ggatatttaa      1380
     aagatgcact cagtcttaaa aacccaagtg tggagaaccc acaatcaatg attgatttcg      1440
     taacttcgat cgagaactta gttacaaata tcaaactact gaaacaacct gattacctga      1500
     aggatcaaag gttgatacaa gatctggtag caaaactacc attcaatttg cgtcagcaat      1560
     ggctgaaatc gttgcttgaa aaagagaaag cagtgaattt gcttgaagca aataaattgc      1620
     ctgatttaga atcgttttct atatggctaa aggaccataa gtcattggca accatgatga      1680
     tgtcgtataa gacgggagaa tactctcaac cagggaaccg cgaaaggttc aatagaagag      1740
     aaaaattgaa tgctcatttg gatataaaat cagacaaaag atacaagtgt ttctcatgca      1800
     atgaaacaac tcatagaaat gctgaatgtc cagttttcgc aaaaatggat gtcgctaaaa      1860
     gaatagaaag tgtgaagcaa aatagacttt gtttcgcttg ttgtaacttc tcgaaccata      1920
     attcgagaaa ctgccagaac cctaggaaat gcaatattgc tgggtgtaag ataaaccacc      1980
     acccaatgct tcacgaaacc aaaagaactc ctaccgtgga gaaaaagtct gaaaatacag      2040
     caaatcaagt taaccaccat gataggaatg atagtagtgt gtattatcaa atcatgccgg      2100
     tggtattatc aaatggagat aaaagagtta gggttttagc tcttttagat ctcggttcat      2160
     ctactagttt gttgctagat gatgtaagaa aagaattggc cataacgggc actaagatac      2220
     cattagctct atcgtggact gatggaaatg ttcaaagaga tgaaaacagt caagaaataa      2280
     cagtggacat tgaaggaagt catggaaata cttatgaatt aagaaaagtg cgtactatcg      2340
     gaagtatgtc acttccaaaa cagtccttaa ataaggatga aatgatcaaa cgttatccgt      2400
     atttaaaaga cattaacttg aaaggttatg gaaaagagtc tccaaaactt ttattaggat      2460
     tgccacactc ctttgttatt caaggattag aatcaagagc gggcaacttc aatcaaccca      2520
     tcgcaaatag aaccagatta ggctgggtct tgcatggaaa agtatcgggt aaatttccca      2580
     ataagaattt taccgtcgca tttcataacg aaattgaaga agatgaagtg tcaatcaaca      2640
     aactaatgaa cgacttcttc tcattggaag gattcggagt aaaacaatcc attaaaccgc      2700
     tggtttcgaa acaaattgaa agagcagaaa aaattatgaa ggaaacattg caatatgaaa      2760
     atggccaata tgaaattggt ctactatgga agcatgacga cgttcaattt ccagatagtt      2820
     attcagcagc attgacaaga ttgaaaggtc aagagctgaa gatgagaaga gatccgacct      2880
     taagaacgtg gtataacaat aaaatcaaag aatacgaaga aaaaggatat atcagaaagt      2940
     tatcgcaaat cgaaacaata actaaatcat caagaactta ttatatacca cacttttccg      3000
     ttattaatcc aaacaaacaa ccgcctaaac ctaggctggt atttgatgca gcagcaaaga      3060
     caagaggaga atcattaaat tcaaatctat tatccggtcc tgataccaac gcaaacttac      3120
     ttggagtttt gatgagattt agagaaggcc gttatgccat ctctggagac attcaggaaa      3180
     tgtttcacca agtaaagatt agaaaagaag atcaagatgc ccagagattt ttattcaggg      3240
     agtcggatag ttcagaaata gatacttatg ttatgcaagt aatgacattt ggtgcaactt      3300
     gctctcctgc ttgcgctcaa tttgtaaaga atcaaaatgc cttaaaatta catgagaatt      3360
     atccgagaga ggttgatgca attttgaaca accattatgt tgatgactac ttagacagct      3420
     ttgacttact ggaagaagca aaagaagtag tcaataatgt gataatgatc cacggcaagg      3480
     ctcattataa tatcagaaac ttcgtatcga attccaattc attgttaaac agtattgaag      3540
     aatcgaaaag aatggaaatt aatgctataa agcttggaga tgatgagcaa ctatatgaga      3600
     aggttttagg cattttttgg aatacggaaa ccgatacgat caattttaaa gtaaaagaac      3660
     tgcaagaaat ggaaaaccca acgaagagga atattttatc cacgattatg agagtatatg      3720
     acccattggg attaatttca aacattacaa ttcaaggtaa aatatttatg caagagttgt      3780
     ggaagttggg gttagaatgg gatgaatcaa ttccagaaga tttgaatgag tcctggaacc      3840
     attggttaac tagactttta gctgctaaaa acattaaatt cccaagatgt tattcaacca      3900
     tgactaacat taaacgacga gagctccatg tatttgcgga tgcctcagat aaagcatacg      3960
     ctgcagttgt atatttacgg actgtcagcc aaaattcgga tgatcctaaa tcggaacaaa      4020
     ttgaaataaa tctagtagca gcaaaagcac gtgttgcccc caacaagatg ctgtccattc      4080
     cacgtcttga attattagca gcagtattag gaactcgaat cgcggaaaat ataatgaatg      4140
     aactaagatt gaaaatcgac agaaccatat attggtctga ttcgaagaca gtgctagctt      4200
     ggatacagtc tgatgctaga tcatataatg tattcgtagg attacgaatt agtgaaatac      4260
     tcgattctac aaccgtatct caatggagat gggtaaacaa aacaatccag cagatgaagc      4320
     aacgaaggtt gtaacaaaag aatccatttg gatgcatggt ccaaatttcc taaagtatca      4380
     agaagaaaac tggcctgtaa aaggaaaacg ttttcaaaca aatgaagaat tgaagccagt      4440
     tcatatcata agggaatgca aaattccaaa ctatagttac attcaaatag aatggtgttc      4500
     cgattggagt cgtttgaaac gagccatcgg tggtataatg aaaatgatcg tttcgaaagc      4560
     taagaatatg gcctacgaaa atacattgct taaagaagat ttctgcgaag ctgaaatcgt      4620
     tctgattaaa aaggctcagt gggataagtt cccgagcgaa atgaagtcat taacatttga      4680
     attgccaatc gagaaaaata gttctcttag aggtctcaca ccgttccttg atgaaaaggg      4740
     agtgatgagg tcgagaggaa gattggaaaa tgctgacgtg ttaaactacg cagctaagtt      4800
     tccaatcata ttaccgaaag atcaccatgt tagtaaactc atactgaaat attaccacga      4860
     gaaattctac catttgaaac tggatgcgtc aatagcatca gttagacaaa agtactggat      4920
     aattgacatt agagcaacaa tgaagaaagt aaagaacgca tgtcaattat gcaaaaatag      4980
     atcggcgcaa ccccagccac ccataatggc tgcgcttccg tcatacagaa caattccatt      5040
     tgtcaaaccg tttacttatg ctggagtaga ttactttgga ccagtaaatg tctctatagg      5100
     gagacgtgtt gaaaaacgtt ggggagtagt atttacttgc ctaataacga gagcggttta      5160
     tttggatctg tctcgtaatc tgagtacaga tgcctttttt atctgtttga aaaatgttca      5220
     atcaagacga ggaagaatta tgcaattgta cagtgacaat ggaacaaatt tcattggagc      5280
     aaataatgaa atcaaaagaa tccgtcagag attagcaagc gaaggaattg aatggttctt      5340
     caatccacct tcagcgcctc attttggagg tgtttgggaa agaatggtaa aagaagtcaa      5400
     aagtatttta gcatcggtgc aagaaactat gccagaagat gttctacgag gcttactcac      5460
     tgaaattgag tatatcataa atagcagacc gttgactcat attccactgg agtcagaaga      5520
     cgacgaagtt ttaacaccat atcactttct gataaattgt tccggtgata tggaaccaat      5580
     gttaaatgat gtttcaaaag gtgaagctct acgagagcaa tggaaaaggt ccagccagtt      5640
     agcgaataac tactggaacc gatggataaa agagtattta cccagtctta caaagagacc      5700
     aaaatggaat caagaaatga aaccaattga agttggagat attgctataa ctcctgatga      5760
     agagaacaaa ggaaagtgga tcaaatgttt ggtaaccgac acaagacccg gaaaagacgg      5820
     gatagtaaga tcggttagaa tcaaaacagc atcaggaaag tatttgacaa gaccagtcgt      5880
     gaaattagcc gttctcgacg tcaagcgtaa acaaaggaat gcatcagatg atgatggcaa      5940
     taagaaaatc gaaatgaaag atgataagca aaacgaaaat ttataaatga tccccaagca      6000
     atacggggta aggaataata agaaggtatt cagcatagat atagtaaaag caaataaatc      6060
     atattttttt tttctatatt aatttcatct ttcaagtaat acataaatgt aaggaaaaca      6120
     tattcaacaa tacccataag gataaggaac aatttactca tgtaacaact ccaactaaat      6180
     tcatatttgt ggtaaaccta cggatgtaga tttacggggt ccgg                       6224
//
ID   BEL-3_CQ-LTR repbase;    DNA;    INV; 797 BP.
XX
AC   AAWU01000122;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_CQ_;
KW   BEL-3_CQ-I; BEL-3_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-797
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 160-160 (2011).
XX
DR   GenBank; AAWU01000122; Positions   85248   84452.
XX
SQ   Sequence 797 BP; 314 A; 140 C; 160 G; 183 T; 0 other;
     tgtagctgac ggtgtcagat ttagttgaag ttaaattaac cgaaagagtt tcaattatta        60
     taaaaaaact tactcgcgct gtctgtgacg aaacaatcac gaaaatcaag aaattcccaa       120
     gcggtgtcgg gtaatttaga agaaagattt atttattaca tttcctgtaa gaaacacgaa       180
     atccaagaaa accattatcg acaggaaagg cagctaggtt tctaggaaca tcagaaaacc       240
     cttttcagaa gtacaaatca gaaggttaaa attcaaacga agacataacc atatatcctg       300
     caagtttatc agatcctaga atcagaaaca cgaaaagacg gtattgtccg cacagagctt       360
     gagaacaagc atccgaagca tgttcgcgca cctgaataca aagtagcacg taaagagtga       420
     aagggacgat cgagcaaacg gattaatcga tcaaagcaga gagaaagtag aaattgagcg       480
     aacgacgcca ctagaataga gaggacaaaa catagaacga actagaccac cgcgtaagcg       540
     agatagacaa gctatgcgcg tatggaagaa aaggacaaaa gtccaggaga gaggtttaga       600
     acaagagaga aatcccttga ttgagagcat tgaaaaattg tactaaattt aaggaactat       660
     ataatgtaac cgaaactttt taataaacag tcacttttta atcaccagtt tgttagttta       720
     caccctcgaa cttacgccgg gttaatttac taataatccg aaaataatgt tattgaagta       780
     atgcactgca cattaca                                                      797
//
ID   BEL-3_DAn-I repbase;    DNA;    INV; 4649 BP.
XX
AC   AAPP01018060;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DAn_;
KW   BEL-3_DAn-LTR; BEL-3_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4649
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018060; Positions  111539  106891.
XX
CC   'GTGTC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3163..4617
FT                 /product="BEL-3_DAn-I_1p"
FT                 /translation="MHLLDRLQDCPVMDDYGSTETFIMYVKNLKAKCRGET
FT                 ITKTLSDEIIIQGKNLLYKVAQNEAFKDELDSLQKDNNIQRTSALIGLNIY
FT                 LDDCGIIRIQGRSQTINPNDDQIVLPKRHPVTYLIVKHFHESNHHLLHEGT
FT                 INIIRSQFFIPQLRVVYKSVRKECQKCKNNTAAPIAPQMAPLPAARIASFQ
FT                 RPFTYTGVDFFGPIAVNVGRHKEKRWGVIFTCLTIRAVHIEIAYSLDTSSC
FT                 VMCLSNFMARRGTPREIYSDNGTNYKATEKVVKEELKNVDFNNLTIKYDEI
FT                 KWNFNPPGAPHMGGAWERLIRSIKTVLKSISPNYSFNDESLRNAMMNAEYI
FT                 INSRPLTFVSLDEKDDDALTPNHLLLGSADGYKPIVTKDSDARQRWHQANE
FT                 VADHFWKRWVKEYIPIITRRSKWFPKRPPLAIGDVAILVDESLPRNLWPKG
FT                 RIIGVATAMDGQVRSATVKTHYGTMVRPATKIAVLDVKNG"
FT   CDS           join(305..2119,2123..3238)
FT                 /product="BEL-3_DAn-I_2p"
FT                 /translation="MISREYNQTECSACKKSSTGKDIIWVHCDICTTWYHF
FT                 GCVRDENTQNTKGWKCVSCSKQPPDPTALTDADTAAVQSAASQRTVSLSGH
FT                 STGAVKKQHKELPTSLQAERANEHILIQNNTLMLQMLEEKRQADQSYIEQK
FT                 YNILAQQSGAALTTPFGPTSTQLSARQILSPDLPTFNGNPDDWPAFLSAFE
FT                 NSTTVAGFSNVENMLRLQKCLKGKALELVRDKLLLPVMVPDVINTLKTFFG
FT                 RPDQILERLIEKARKISINKERLDTLIDYSLAVRNICATMEACQLNHHLNN
FT                 PLLLRELVDKLPSHYKLTWAMLPKDSSAALIKSFSDWLYTIAEAASTVTPS
FT                 IYSRASNVHTHVQYSMDAQDNSEYNPPRYNASQREATHCNACNSTLHPITE
FT                 CEVFQKLPYEKKQEMVREYKLCFKCLKIHGRRCFSTQLCGIGGCESRHHPL
FT                 LHKGHANPDIVSSHRTNPPGGEQYFRIVPIKLYTHNSYIDTFAFLDEGSSV
FT                 TLIDEKLFKKLNIQGTLDPICMQWTNQTTRRENESVRFNIKVSSMGTNRTY
FT                 WLNNIHTVQNLGLPKQTLDIKELTNKYTHLQRLPIASYTDAEPMLLIGIDN
FT                 WKLAVPRIKEGRWNDPIASKCMLGWSVQGSGKDNKHFSMHHCQCNWTEIDK
FT                 AVKESFNVEPVIPRTLRSKDDEKAFKIMQETCVKIDGRYEIGLLWRHKDTV
FT                 LPESYTNALKRLSCLKAKMEKEPDLRVKIQEQVNNLLEKGYAIELKNEESA
FT                 PTQPRKDLGDTEKVLGMFWDPESDTFKYIFRFAKLKRNVLSETVRPTKREA
FT                 LQVLMSIYDPLGFLSCYTIGLKILLQETWRSGIGWDDELPDPSQSFWKKWL
FT                 KILSQAKSVHIPRHYSPLLHTADSVELHTFVDASEYGYAAVCYLRVIKGFD
FT                 ITTNLVIAKSKVAPLKPLSIPRMELLAAVAGVRLAHKTQLTRNLNIGECTF
FT                 WTDSKTVLSWMTMDPRKRSSCT"
XX
SQ   Sequence 4649 BP; 1532 A; 1103 C; 982 G; 1032 T; 0 other;
     tcctttaaaa aatcttactc aaactccccg tgtgtgatct ttggtttatt gccgcgtacg        60
     tattatttca tacatgaacg aagaagttcc gctgcatcat cggaccacat acacacaggc       120
     gtcgaagttg aatattagcg agtagtcacc gcgaaaaaac gatgtatacc tacgaaaaca       180
     tatcaaactt tgctgcgcaa ttaacgcgga caaaaataca actcagttct ttcttgtcta       240
     ataaggctga aaacaggcat agatacaacg aagacaagaa gcaagaagat cagaagtaat       300
     aaccatgata tcccgtgaat acaaccaaac agaatgcagt gcatgcaaaa agagtagtac       360
     cggcaaagac attatatggg tgcattgcga catttgcacg acgtggtacc actttggctg       420
     cgttcgagac gagaacaccc agaatacaaa aggatggaag tgcgtctcct gcagtaaaca       480
     gccacctgac ccaaccgcgc tgactgacgc cgacacagcc gctgtccaaa gtgccgcttc       540
     gcaaagaacc gtttcgctat cgggacactc gaccggggct gtgaaaaaac agcacaagga       600
     actgccgact tctttacaag ctgaacgtgc caatgaacat attttgatac aaaacaatac       660
     tctaatgcta caaatgctag aggaaaagcg gcaggccgat caaagctaca tcgaacaaaa       720
     gtacaatata ctagctcagc aaagtggagc cgctctgacc acaccattcg ggcctacaag       780
     tacccagctg tcagcacgtc aaatactgtc acccgatcta ccgacattca acggcaatcc       840
     ggatgactgg cctgcgttcc tcagtgcatt tgaaaatagc accactgtag ctgggttttc       900
     aaatgtcgaa aatatgctac gactccaaaa atgcctcaag ggaaaggcac tcgaactagt       960
     aagagataag cttctgcttc ccgttatggt ccctgacgtc ataaacacac tcaagacgtt      1020
     cttcggacgt cccgatcaga tactagagag attaattgaa aaggcgagaa aaatctccat      1080
     caataaagaa cgacttgaca ctctcataga ttattcctta gcagtacgaa atatttgtgc      1140
     tacaatggag gcttgtcagc ttaatcacca cctaaacaac cccttgctgt tgagagagtt      1200
     ggtagacaaa cttcccagcc attacaaact gacctgggct atgctcccaa aagactcaag      1260
     cgctgcattg attaagtcgt tcagcgactg gctctataca atcgccgaag cagcatccac      1320
     ggtgacgcca tcaatttact ccagggccag caacgtacac acccacgtcc agtacagcat      1380
     ggatgcccaa gataactcgg agtacaatcc accaaggtac aacgcttcgc aaagggaagc      1440
     cacccactgc aacgcctgca acagtacact ccatcctatc actgaatgcg aggtattcca      1500
     aaagctccct tacgaaaaga agcaggaaat ggttagggaa tacaagcttt gcttcaaatg      1560
     cttaaagatc catggtcgca ggtgcttttc aactcagttg tgtgggatcg gaggatgcga      1620
     gtcgagacac caccctctgc tgcacaaagg ccatgcgaat cctgacatcg tctcctcgca      1680
     ccgaactaat ccacccggag gggaacaata ttttcgtatc gttccaatta aactgtacac      1740
     tcataactcc tatattgata catttgcatt tctagatgaa gggtcatcgg tcacacttat      1800
     agacgaaaaa ctcttcaaaa agttaaacat ccaaggtact ctggatccca tctgcatgca      1860
     gtggacgaat caaacgacaa gaagggagaa cgaatccgtt cgatttaaca taaaagtctc      1920
     tagcatgggc accaacagaa catattggtt aaacaacata catacagtac aaaatttagg      1980
     attaccaaag caaacgctgg acatcaagga gttaactaat aaatacactc acctgcaaag      2040
     attaccgatc gcatcatata cggatgctga accaatgttg ctgattggaa tagacaattg      2100
     gaagttagcc gttccccggt aaataaaaga aggaaggtgg aatgatccca tcgcatccaa      2160
     gtgcatgctc ggctggagtg tgcaaggatc cggaaaagac aataaacatt tttctatgca      2220
     ccactgtcaa tgcaactgga ctgaaattga taaggccgtt aaagaaagct tcaacgtaga      2280
     acccgtaatt cccaggacac ttcgctctaa agatgatgaa aaagctttca aaattatgca      2340
     ggagacgtgc gtaaaaatcg acggacggta cgaaatcggc ctgctttggc gccataaaga      2400
     tacggtactt cctgaaagct acacaaacgc actaaaacgc ctaagttgtc taaaagctaa      2460
     aatggagaag gaaccagatc tacgagtgaa aattcaggag caagtcaaca atctgctaga      2520
     aaaaggctac gccatcgagt taaaaaatga agagtcagcc ccaacacagc ctagaaagga      2580
     cttaggagac actgagaaag tcttaggtat gttttgggat ccggagagtg atacatttaa      2640
     atatattttc agattcgcaa aactaaaaag gaacgtacta agtgagacgg tccgccccac      2700
     taaaagggaa gctctacagg ttctgatgtc aatttatgac cccctaggat ttttgtcatg      2760
     ctatactatt ggacttaaaa ttcttctaca agaaacatgg cgatcaggga tcggatggga      2820
     tgacgaatta ccggaccctt cacagagttt ctggaaaaaa tggctaaaaa tactatcaca      2880
     agctaagtct gtacatattc cacgacatta ctcaccattg ctgcataccg ccgatagcgt      2940
     cgaactacat accttcgtcg atgcgagcga atacggatat gcagctgtgt gctaccttcg      3000
     cgtgatcaaa ggatttgaca tcacgacaaa tctagtcatt gctaaaagta aagttgctcc      3060
     cttgaaacca ctttcgatac cacgaatgga actgctcgcc gccgtagccg gcgtccgcct      3120
     ggctcataaa acacaactca cacggaactt gaacattggc gaatgcacct tttggacaga      3180
     ctccaagact gtcctgtcat ggatgactat ggatccacgg aaacgttcat catgtacgta      3240
     aaaaacctga aagcgaaatg tcgaggagaa accatcacca aaacgttgtc agatgaaata      3300
     attatacaag gaaagaacct actttataaa gtagcccaaa acgaagcatt caaggacgaa      3360
     ttagattctc tccaaaaaga caacaacatt caaaggacca gcgcgcttat tgggttaaac      3420
     atctacctag acgattgcgg cataattcgc atccaaggaa ggtcacaaac tataaacccg      3480
     aacgacgacc aaatagtact accaaaacgc cacccggtta catatcttat tgtcaagcac      3540
     tttcacgaga gcaaccacca tttgctgcat gagggaacta taaacataat caggagtcag      3600
     ttctttatac cccagttacg cgtggtatac aaatccgttc gaaaagagtg ccagaaatgt      3660
     aaaaacaata cagcagctcc aatagcgccg cagatggccc cattgcctgc agccaggatc      3720
     gccagctttc aaagaccatt cacttatact ggagtggact tttttggtcc catcgcggtc      3780
     aacgtaggcc gacacaagga gaaaaggtgg ggcgtgatat ttacgtgcct tactatacgc      3840
     gccgtacata tagagatagc gtatagcctc gatacaagct catgtgtaat gtgcctctca      3900
     aactttatgg cccgacgagg aactccaaga gaaatatact cggataatgg aaccaattac      3960
     aaggcaactg agaaagttgt taaggaagag ctgaagaatg tagacttcaa taacctaacc      4020
     attaaatacg acgaaattaa atggaatttc aatcctccag gtgctccaca catgggagga      4080
     gcttgggagc gcttaatacg atcaatcaaa actgtattga aaagcatctc tcctaattac      4140
     agttttaacg acgaaagcct aaggaacgcc atgatgaacg ctgagtacat tatcaactcc      4200
     cgtcctctaa cattcgtatc cttagacgaa aaagatgatg atgccctcac tccaaatcat      4260
     ttattgttag gatccgcaga cgggtacaag ccaatcgtca ccaaggactc ggatgcaagg      4320
     caacgctggc accaggccaa tgaggtggca gatcatttct ggaaacgatg ggtcaaggag      4380
     tatattccca taattactcg tcgctcaaaa tggttcccaa agcgtccacc attagcaatc      4440
     ggagatgttg ctatactcgt ggatgagagc cttcccagga acctttggcc gaaagggcgt      4500
     ataatcggcg tagccacagc tatggatgga caagtacgct cggctacagt gaagacccac      4560
     tatggaacta tggtgcgacc agcaaccaaa atagcagtgt tggacgtgaa gaatggataa      4620
     acccctgcag acgtttatgg gggggagaa                                        4649
//
ID   BEL-3_DAn-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   AAPP01018060;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DAn_;
KW   BEL-3_DAn-LTR; BEL-3_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-225
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018060; Positions  106890  106666.
XX
SQ   Sequence 225 BP; 86 A; 38 C; 39 G; 62 T; 0 other;
     tgttagcgcc aacactacaa catatggtaa aataacgaac gagttgtgag tagcagaaca        60
     agcgaattga aaaatgtcat ctcaaatcgt tagccacaga agaagccgaa agacgaacaa       120
     gattttttaa agctcgtaaa attttgatta attaaacatt taaattagtc ctaaaagcgt       180
     gctattaata tttgttttga tttcaacaca tcctgggctg caaca                       225
//
ID   BEL-3_DAzt-I repbase;    DNA;    INV; 5738 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5738
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 769-769 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..5737
FT                 /product="BEL-3_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MEMDAANADMELDAADAAVAANVADAANAADAAVESP
FT                 MVREQNRVSFLKLKSTDLCEKMKGLAAECQNESLVADYYMLVVKQEQLDKL
FT                 IGKFEMLHTELEELDQSEINSGAANMFESLASTVKASIMREIAKISGHMPL
FT                 HSTMAGGNITADFVSSHFPVRRRQVPSLPPIQLPTFSGGYAKWTDFYSTFI
FT                 TIIDNHPDLTNVEKFQHLRSCLRDAALETVRSLEISDGNYSVALQLLERRF
FT                 NNRRLVFQAHINEVLGLQAVENGSVVMLRELSDGFNAHMRALQSLGTSEQI
FT                 AGCIIVQELLRKLDPASQAKWEERFEEPAYANSIPSWEYMASFLEQRCRAL
FT                 ETVDFARANYAPSSQVGKNRRYNNSRSTLVATSQTFSGCVLCSNSAHEIQY
FT                 CPRFKALSPENRHKEAKRLSLCINCLRTGHRLSQCTSSHCRICGGRHHTTL
FT                 HFGNPDSAAGQGQSTDAQSPFAPPHSDPAQLTTEPSTSASTSSALIAQGLN
FT                 NNVVLLATAIVLVKNRSGVLVPCRALLDSGSQLHLITSRFANQLQLRKMKS
FT                 STAVSGIGDSSFGTDGCSVSVSLHSRSSDYSALVTAIVASNITDRQPCFGI
FT                 DTHNWNIPANIPLADPEFYRPQRVDLLIGASLFYDLLCVGQIKLLPGLPSI
FT                 QKTRLGWVVSGACSRVNRSSLMVARASAVVTEDNNSDEQLEVLLQRFWEVE
FT                 NCIEPIVKSTKEELDCEAHFVQHVRRLQSGDYCVRLPAKYSLDLLGESYNQ
FT                 ARRRFLSLERKLNRRPDVKAQYAAFISEYLDLGHMSPVPAQSISNCRYFLP
FT                 HHCVMKEESSTTKLRVVFDGSASTSSGYSLNDVLMAGPVIQPKLFHIIARF
FT                 RSYAVAITGDICKMYRCVRVSPEDSNLQCILWRNSTQEDLRVFQLDTVTYG
FT                 TKPASYLSVRVMHQLATDEQVDFPVGAEILRRDFYVDDLISGASSQEEAIL
FT                 IREQTAAILSRGQFRLRKWCSNVPAVLDGVPDEDKETYLKFDDGSHFTKTL
FT                 GLAWDPVSDQLLFSFSALEASPNPCRRSVLSTIARFYDPLGLAGPVITKAK
FT                 IFLQRLCKEKLAWDESLPASLSTEWQEMCSSFGQIRRLEFPRLVLLSDSEI
FT                 EVHGFCDASIEAYGACIYVVSKGQHPSSHLLCAKSRVAPLKTLTVPKLELC
FT                 GAELLARLISEIAGMHVFKGRLYCWCDSAVALSWIRDESSRFNIFVANRVA
FT                 AIQEMTDNMTWRYVPTGLNPADILSRGALPTELNDSLLWAHGPPFLCGPSD
FT                 DWPPTVLPDKPALELRRSTLLVKSPYIDIVADSKYANSFISLQHVFGYVYK
FT                 FCNRIRHPGLIVSDVEHGTQLLLRLVQRSHLWEDMKSLRSRGSVSPSSSLA
FT                 SLSPFMDQFGLLRVDGRLKNSSLDFDGRHPIILPSSHPLTLSIISHFHERN
FT                 LHAGPRALLGLIRSQYWPIGGRKTVNKAVNKCVRCFRMKPRVLEHIMADLP
FT                 KERLDGSHAFEITGVDFCGPFFYKSETRNKGPVKCYVCVFICFATKAVHLE
FT                 LIKDLSTLAFLHGLKRFICTRRKPRQIWSDNATNFVGARNELMELKRLFLS
FT                 DDHQKAVLDFCLVESIDWHFIPPRSPHFGGLWEAAVKTAKYHFYRAIGSSV
FT                 LGFDELRTLLCHITAVINSRPLVPISESPADLDVLTPAHFLNGGPPASFAE
FT                 PDVTQLKFDRLDGWQRVSYLQQLFWSRWKEEYITSLQQRSKWRTPKPSLAV
FT                 ADMVIVKDENLPPMKWPLARVVELLLGRDGVARVAVLKTSSGLIKRAVNKL
FT                 CLLPLKDAVEGQGFNGGS"
XX
SQ   Sequence 5738 BP; 1355 A; 1390 C; 1390 G; 1603 T; 0 other;
     ttggtgaccc cgacgtgatt tgtgcaagaa taaatgtatt agtgcaatca caaactatac        60
     taaatcatta ttttaattgc caccagccag tgccatcgac tatataatac tacatatata       120
     caccggcctc ccttgcagtt cggcttacgg tgcttattct tccagtctgt tgcgctcggt       180
     gctctttgct ctcatcttcc cgcaagaaac gattcccgca ccggctgccc ttgcacatag       240
     cgttgcttgc ggttcttgtt cactgctttc ggtcctcctt tcgttcgtct tcccgctagc       300
     gacgtttatt acgcgcttta ctctttgcgg tcatcttccc gcattaaacg tttgctaagc       360
     tgccgccgct atggagatgg atgctgccaa cgccgatatg gagctggatg ctgccgatgc       420
     tgctgttgct gccaacgttg ctgatgctgc caacgctgcc gacgctgctg tcgaaagtcc       480
     aatggtcagg gagcaaaaca gggtgtcatt tttaaagctc aaatccacgg atttatgcga       540
     aaaaatgaaa gggttagctg ctgagtgcca gaatgagtct ctagtagcag actattatat       600
     gctcgttgtg aagcaagagc aactcgataa actgatcgga aagtttgaga tgctccacac       660
     cgagctcgag gaattggatc aatccgagat taatagtgga gcagctaata tgttcgaatc       720
     gcttgcgagt acggtgaagg cgtcaattat gcgggaaata gcaaagatta gcggacacat       780
     gcctcttcat tccaccatgg ctggaggaaa catcaccgct gattttgtca gctcgcactt       840
     tccagttcga cgtaggcagg taccgtccct gcctcctata cagctgccaa ctttcagcgg       900
     aggatatgct aagtggaccg atttctactc cacgtttata accatcatag ataatcatcc       960
     tgatctaacc aatgtggaga agtttcagca tttgcgttcc tgtctgcgtg atgcggcttt      1020
     ggagactgtg cggtcgctgg aaatttcgga tggcaattat agcgtggctt tacaattatt      1080
     agaaagaaga tttaataatc gacgcttagt ttttcaggca cacataaatg aggtcctagg      1140
     gctccaggct gtcgaaaatg gttcagtggt aatgctccga gagctgtcgg acggattcaa      1200
     cgctcacatg cgtgcgcttc agagtttggg cacttccgag cagatcgccg gatgcatcat      1260
     cgtgcaggag ctgcttcgta aacttgatcc agcgagccaa gccaagtggg aggagcgatt      1320
     tgaggagcca gcgtatgcaa actcgattcc gtcatgggag tatatggcct ctttcctgga      1380
     acagcgatgc agagcattgg aaacagtgga ttttgctagg gcaaactatg cgccgagcag      1440
     tcaggtgggc aagaatcgaa gatataacaa ttccaggtcc accttggttg caactagcca      1500
     aaccttctca ggctgcgtgc tctgcagtaa cagcgctcac gaaattcagt attgtccgag      1560
     gttcaaggca ctgtcccccg aaaatcgcca taaagaagcc aaacgactgt ccctttgcat      1620
     taattgcctt agaacaggcc accgattaag tcagtgcacc tcgagccact gtcgtatctg      1680
     cggcggcagg catcatacta cgcttcattt cggtaaccct gattcggctg cagggcaagg      1740
     tcagtcaact gatgctcagt ctccgtttgc gccccctcat tctgatccgg ctcagcttac      1800
     cacggaaccc tctacttcag cgtctacttc gtctgcactt atagcccaag gtctcaataa      1860
     taacgttgtt ctacttgcca ctgccatagt tttggtaaaa aatcgttccg gagttttagt      1920
     tccctgcaga gcattgctag attccggctc ccagttgcat ttgataactt ctcgtttcgc      1980
     caatcagctt cagcttcgga aaatgaaatc atcaaccgca gtttctggaa ttggcgactc      2040
     cagctttggc accgatggat gttcggtcag tgttagcttg cattctcgct catctgatta      2100
     ctcagctctc gtcactgcta tcgtagcttc taacataacg gatcgtcagc catgctttgg      2160
     aattgacact cataattgga acattccggc gaacatacca ctagcggatc cggagtttta      2220
     taggcctcag cgcgtcgatc tattaattgg agcaagtcta ttttacgatc tcctttgtgt      2280
     tggtcagatc aagctactgc caggattgcc ttcaattcag aaaactcgct tgggatgggt      2340
     cgtgtctgga gcctgttctc gtgtaaatag gtcttcttta atggttgctc gcgcttcggc      2400
     cgttgttacg gaggataaca attcagatga gcaacttgaa gtgcttcttc agaggttttg      2460
     ggaggttgag aattgcatcg aaccaatagt aaaatctacc aaagaagaac tggattgtga      2520
     agctcatttt gttcagcacg tccgtcgatt acaaagtggc gattactgcg ttcggctgcc      2580
     agctaaatat agtttggatc tcttgggaga atcttacaat caagcgcgtc gcagattcct      2640
     gtcccttgag cggaagttaa atcgtcgccc tgatgtgaag gctcagtatg ctgccttcat      2700
     aagtgagtat cttgacttag gtcatatgtc tcctgttcct gcccaatcaa tcagcaactg      2760
     ccgatatttt ctacctcacc attgtgtcat gaaagaagag agttctacga ccaagcttcg      2820
     ggtcgttttt gatggatctg cttcaacatc atctggctac tccttgaatg atgttttaat      2880
     ggctggcccc gtaattcaac ccaaactctt tcatattatt gctcgatttc gttcatacgc      2940
     agttgcgatt acgggagata tctgtaagat gtatcggtgc gtacgagtat cacccgagga      3000
     cagcaacttg cagtgtattc tgtggagaaa ctccacgcaa gaggacttgc gcgtgtttca      3060
     attggatacc gttacttatg ggacgaagcc tgcctcttat ttatcagtgc gagtgatgca      3120
     tcagttggca accgacgagc aggtagattt tccagttgga gctgaaattc ttcgccgtga      3180
     tttctacgtg gatgatttaa tatctggcgc cagctctcag gaagaggcca tcctcattcg      3240
     tgagcaaacg gctgcaatct tgtccagagg tcagttcaga ttgaggaagt ggtgctcaaa      3300
     cgtgcccgct gtgctggatg gagttcctga tgaggacaaa gaaacttatt tgaagttcga      3360
     tgatggcagc cattttacta agacactagg actcgcttgg gacccggtct ctgatcaact      3420
     tttattttcg ttctcggccc tagaagcgtc tccgaatccc tgcaggcgct ctgtgttatc      3480
     aaccatagcg cggttttacg atcctctcgg acttgctggt cctgtaatta cgaaagcaaa      3540
     aatctttctt cagcgtttgt gcaaggagaa gttagcctgg gatgaaagcc tcccagcctc      3600
     gctaagtacg gagtggcaag aaatgtgcag cagttttgga cagattcgtc gacttgagtt      3660
     tcctcgcctt gttctccttt cagactccga gatagaagtt cacggattct gcgatgccag      3720
     catcgaggct tatggtgcat gcatctatgt cgtgtcaaaa ggtcagcatc ccagcagtca      3780
     cttactttgt gccaaatctc gtgttgcgcc tctgaagaca cttacggttc caaaattgga      3840
     gctttgtgga gctgagttgt tggcaaggct catatctgaa atagccggaa tgcatgtctt      3900
     caagggaagg ttgtactgtt ggtgtgattc ggcggttgca ctttcctgga ttcgggatga      3960
     gtcgtcaaga tttaacatat tcgtcgcaaa tagagtggca gcgattcagg aaatgaccga      4020
     caacatgaca tggcgttatg ttcccacagg tttaaaccca gccgacattc tgtctcgagg      4080
     ggctcttccg actgagctga acgattctct cctttgggct catggacctc catttctttg      4140
     tggtccctca gatgactggc cgcccacagt attaccggat aagccagccc ttgagcttcg      4200
     ccggagtact cttctagtaa aatctcccta cattgacatt gtagctgact ccaagtatgc      4260
     gaattcgttc atttccttgc aacacgtttt cggatacgtt tacaagtttt gcaatcgcat      4320
     tcggcatccc ggactgattg tctcagacgt tgagcatgga acacaattat tgctgcgact      4380
     agtccagcgt tctcatctat gggaggacat gaagtcgctg cggtccagag gatcagtttc      4440
     cccatctagc tcccttgcat cattgtcgcc attcatggat cagtttggtc tgctcagggt      4500
     tgatggtcga ctgaagaact cttcgttgga ttttgatggc cgtcatccaa ttatcttacc      4560
     cagcagtcat ccactaactc tttccattat ctctcacttt catgagcgga atctccacgc      4620
     tggacctcga gcgttgcttg gacttattcg atcccaatat tggcccattg gggggaggaa      4680
     gactgtaaac aaggcagtga acaaatgcgt aagatgcttt cgaatgaagc ctagagtatt      4740
     ggagcatatt atggcggatc ttccaaagga gcggctcgac ggttctcatg cctttgagat      4800
     caccggcgtc gacttttgtg ggccattttt ctacaaatcg gagacacgca ataagggtcc      4860
     agtcaagtgt tacgtctgtg tcttcatttg cttcgctacc aaggctgttc atctggagct      4920
     gattaaggat ttgtccacac ttgcctttct tcatggatta aagcgcttca tatgtacccg      4980
     acggaagccg cgacaaattt ggtcggacaa cgcaacaaat tttgtcggcg ctaggaatga      5040
     gctgatggag ttaaaacgcc tgttcctcag cgatgatcat cagaaggctg tgctagattt      5100
     ttgcttggtg gaatctatag actggcactt cattcctccg cgctccccgc attttggtgg      5160
     cctttgggaa gcggcagtta agacggccaa ataccacttc taccgtgcga taggcagctc      5220
     ggttcttgga tttgacgaac tacggacgct gttatgccac atcacggcag taattaactc      5280
     aagaccttta gttccaattt cagagagccc tgccgatctg gatgtcctaa ctccagcgca      5340
     cttcttgaat ggtggccctc ctgcttcgtt cgctgagcct gatgtcacac aactaaaatt      5400
     tgatcgcttg gatggctggc agcgcgtttc atacctgcag cagctcttct ggtcccgatg      5460
     gaaggaagag tacataactt cactacagca acgctcaaaa tggcgcactc cgaaacccag      5520
     tttggcagtc gcagatatgg tgattgtcaa ggatgaaaat cttcctccca tgaagtggcc      5580
     acttgcgaga gtggtcgagc ttctactcgg aagagatggc gttgcccgag tcgccgtgct      5640
     gaagacctca tctggactta taaaacgagc cgtcaacaag ctgtgtctgc tgccccttaa      5700
     agatgctgtt gaaggacagg gtttcaacgg ggggagta                              5738
//
ID   BEL-3_DAzt-LTR repbase;    DNA;    INV; 428 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-428
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 749-749 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 428 BP; 122 A; 114 C; 69 G; 123 T; 0 other;
     tgtcgggtca agcagtataa gcctaaagta aattcacatc tcgatgtttg ctattgccat        60
     gcccacttta ttaaatttgt attgttaccg catatgccta ctcacggcag cggttttcgt       120
     tcgcttatca cacacataag aattcgtcta ctcggcttag cagcagcccg aactgcgcta       180
     gctctttcaa tcgtactctc tcccgctcgt taagcattgt ctcctagggc acggcaatta       240
     cgccgccagc ccttgcgttc agtcttgagc gaatattcaa accctcaaaa tcaatcgatc       300
     gtcactcgtc gcagacataa acatatacac ttcccataaa taaatctggc attaagccac       360
     gtatatacat ataatatata accgttttta aatctcaaca gctagtgaaa aagctcacta       420
     gcttaaca                                                                428
//
ID   BEL-3_DBi-I repbase;    DNA;    INV; 5046 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DBi_;
KW   BEL-3_DBi-LTR; BEL-3_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5046
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 815-815 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 90% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3598..5013
FT                 /product="BEL-3_DBi-I_2p"
FT                 /translation="MNIVDVIHTPATELQYAFKHIVSHIQQKTFFNEIQQL
FT                 KENKILKPEFQKLNPFLAATDGANGSITLLRVGGRLAKAPISLDAKFPVLL
FT                 PKNHCFTLKFVEYLHQQHMHAGPKALIGILRLQAWIVNAREIVRKIVRRCT
FT                 HCYHYKPRLMEQIMGSLPVDRFHSQRPFFVTGVDLCGPFSTSYRIRSKVPY
FT                 KTYMAVFICFSSKAIHIELISDLSTNNFILCLKRFVSRRGIPLRIYCDNAT
FT                 NFVGARSQLEDFKQQLFDEANTLNVQKFSSIVGFEFKFIPPRAPHFGGLWE
FT                 AAVKSMKSLMMKNLGNTGLTYEELQTIAIESEAILNSRPMAPLSEDPNDGE
FT                 ALSPAHLLIGSSLMSVPEPSIDESRPSYLTRWQRVTYLKQQFWELWRRDYL
FT                 HTLQARSKWLKPNANIQIGQMVIIHEDNTPPQEWILGRITDTHVGADGRVR
FT                 VADIKVKNGTIRRPICKIAPLPEQIGA"
FT   CDS           join(1440..2459,2463..3431)
FT                 /product="BEL-3_DBi-I_1p"
FT                 /translation="EAKQSALCINCLRTGHLASRCPSRSRCRVCQGLHHTI
FT                 LHRTAHPEQPTQIVSHTSQQQREPTHAVSMLSRHSRRALIPTAIVLIRDKF
FT                 GIFQPARALLDSGSEINFISEELAKLLQLRFERQKYDISGIGDVRTQMRFS
FT                 VSTTIRSRLSVNEWHLQFAVAKTISLNQPERFVDTSQWNIPSEIDLADPGF
FT                 YMPHRIDLLISTQEFFDLLSNGKISLGPGLPCLVNTALGWIVGGKVSDIPQ
FT                 SQVVTCNMARSTELQGALKRFWLIEEFDSHDQGFTAEEQECERHFVANTRF
FT                 LTSGRVQVCLPFKENPHMLGKSFEIAKSRFLQNERRLSRNPLLKEMYELNH
FT                 MQLASDFDSQKTHYVIPHHGVLRSESTTTKLRAVFDASCKTTSNLSLNELL
FT                 MIGPSIQQNLILTLLAFRLHRHALVADICKMYRQFEVSPDDRMYQLVLWRE
FT                 SSAAPLELFQLNTVTYGMSCAPFLAIRSLKYIADNFSNQFPIGAAVLKEDM
FT                 YVDDLLTGADSVEELHLKAAEVTSILSKAGLELAKWNTSKIEGNGAEFQFK
FT                 VDTKDVTKTLGMSWQPKLDVFCFRYTLPTISVITKRSIVSLVAHLYDLLGL
FT                 VSPVVIRCKILVQELWMHRPNWDDPLPQELQSQWKRIEEDLHNSSPRSPGL
FT                 IGMASTSTKFSGHQ"
XX
SQ   Sequence 5046 BP; 1435 A; 1182 C; 1100 G; 1329 T; 0 other;
     ttttggcgac cgtgacagga ctctgcattc ggcaagtccc accataaacc acttagaatc        60
     attccctctg cattcggcgg agaaatagat tccagcaacg ccaatacttg gtgtattttg       120
     gcaggcagtg cagctcatcg gaatattggc agtgtttggc atcatcgttg gatctccgga       180
     agcatcgttg gatcaccgga atcatcgcca ctggatcgtc gtggatacct gcatacaggg       240
     tatgcgcatc ataaccgtcg caagtacagc tttggagagc tacgaacagc ggcacaaaga       300
     ggacgaaaaa ctgtaagcta gactcgcaaa tgcaatcgcg gttttgtcat tccactctga       360
     agcaaagggc attgcccata cacacacata cttgtgcagc tggtctgcaa ataaataagc       420
     caaaaattga gttactctcc caagcatcgg agtgttttgt tttctccctc tgaaccaaag       480
     ggcattgcca acatatttgg tattgcttca ctcaataatt gctccacact agttttcgct       540
     aaataactct tcgcaaaaat gactgatatt caactcgtgt ctttaagaca acaaaggaat       600
     acaattcagc gaaatatagt caatctcaaa gctcgcatcg aactgcagaa cgaccttgct       660
     gcccttgaat gccagtcaca aattttggaa tcgtatttaa caaattcttc aaattcaatc       720
     acagatcgaa cggctggatg cggctgacga cggccggcaa gaattagagg acgtattcat       780
     agaaaccaag gcaattatca tcactcgtat tggggcgtca aagaaggacc ggccagaaga       840
     tgcaagtttc tttaattcat cggcaaattg cgcaactggg caccataatc gtttgccttc       900
     gttaaagctg cctaagttcg acgggaagta tggtgactac atgaagttta tcactgcctt       960
     tactagcatg gtacatgatg acgcttcaat atcagctgtt gacaaattta actacttgct      1020
     tagctgtttg tctggcccgg cgctgagtgt tgtggccccc tttaagtgtc cgaaaacaat      1080
     tatccaaagg cgttaaagca gttaaaggaa cgctacgata aaaaggtttt gattttcata      1140
     gagcacattt ctagcttatt cgatattcaa gttatgaaaa gatctgatcc cgcagctctt      1200
     cgctgtatct tggataccgt ctccgctctg cgtgaatcgt tgttgtcgtt aggaacagaa      1260
     gcagatgtta tgaacgcaat actaattcat cttgttttat ctaaaattga tgcagattcg      1320
     aaattatcgt acgatcgggt tcaagaatac gaggtgttgc ctacttggga ggattgttat      1380
     cgcagtttaa gccgtcattg tcaatttttg gagagcaacg ttaaacgaac atctgatgag      1440
     aagccaagca atccgctctg tgcataaatt gtttgcgcac cggccatttg gcgagcagat      1500
     gtccaagtag atctcgatgc cgcgtttgtc aaggcttaca tcatactatt ctgcatagaa      1560
     ctgctcatcc agagcaacca acacaaattg tttcccacac atctcagcag cagcgggaac      1620
     ccacacatgc tgtttccatg ctttcgcgtc attcgaggcg cgctttaatt cctacggcaa      1680
     tagtattgat tagggataag ttcggaatat ttcagccagc cagagctttg cttgactcag      1740
     gctctgaaat aaatttcatc tctgaagagt tggccaagct ccttcagctc agattcgaga      1800
     gacagaagta tgacatttct ggcataggcg atgtcagaac gcagatgaga ttctcggtct      1860
     caacaactat tcgatcacga ttatctgtaa atgaatggca tttacaattc gctgtagcca      1920
     agacaatatc gcttaatcag ccagagcgat tcgttgacac ttcacaatgg aacataccct      1980
     cagagattga ccttgcagat ccaggcttct acatgcctca ccggattgac ctactcatca      2040
     gcacacaaga gttttttgat ttactttcaa atggcaaaat ttctttgggt ccaggccttc      2100
     cttgcctggt caatactgca cttggttgga tcgttggcgg aaaggtttct gatattccgc      2160
     aatctcaagt cgtaacatgc aacatggcac gttctacgga gctgcaaggt gcgttaaaaa      2220
     ggttttggct aatcgaggag tttgattcgc acgatcaagg tttcaccgca gaagagcagg      2280
     aatgcgaacg gcattttgtg gcaaacacaa ggtttctcac atctggacgg gtccaagttt      2340
     gcttgccatt taaggagaat cctcacatgt taggtaaatc ttttgaaatt gccaaatccc      2400
     ggtttttgca aaatgaacgg aggttgagcc gcaacccgtt gttaaaggag atgtacgaat      2460
     aattgaatca catgcaattg gcttctgatt tcgactctca aaagacacat tatgtaatcc      2520
     cgcatcatgg agtccttaga tcagaaagca cgactaccaa gctgcgtgct gtgttcgatg      2580
     catcgtgcaa aacaacgtcg aacctttctc tgaatgagtt gttgatgatt gggccaagca      2640
     tccagcagaa tcttatctta acacttcttg cctttcgctt acatcgtcat gcacttgtag      2700
     ctgatatctg caagatgtat cgccagtttg aagtatcacc agacgatcgt atgtatcaac      2760
     ttgttctctg gagagaatcc tcagctgcgc ctttagaatt gtttcagctc aacactgtca      2820
     cgtacggcat gtcctgcgca ccatttctag caatcaggag cttgaaatat attgcggata      2880
     acttctccaa tcagtttccc atcggagcag ccgtacttaa agaagatatg tatgtcgatg      2940
     acctccttac tggagcagac agtgtcgaag agcttcatct caaggctgca gaggtcacca      3000
     gcatactttc taaggctgga ttagagcttg caaagtggaa cacaagcaaa atagaaggca      3060
     acggagcaga gtttcaattc aaggttgata ccaaagatgt aacgaagact ttgggcatgt      3120
     cgtggcaacc aaaactagat gtgttttgtt tcaggtatac cctacctaca atctctgtca      3180
     tcaccaagcg gagcatcgtt tcacttgtag ctcacctgta cgatttgcta ggactcgtat      3240
     caccagtcgt tattcgatgc aaaatattgg tccaagagtt gtggatgcat cgtccaaact      3300
     gggacgatcc acttccccaa gagcttcaat ctcagtggaa gcgaatagaa gaagatttgc      3360
     acaactcgtc accaagaagt ccaggactca tcgggatggc ctcaaccagt accaaattct      3420
     caggacacca atgaagagtt ggagctgcga aaagcaacag tcctcacatg taccgatagt      3480
     ggtagcaagg aagatatatt cgactacgtt atcaacaaat tctcatccta tcggcgcatt      3540
     ttgcgagtca tagcttttgt gttgcgcgtc ttcaacagaa tcaaggtcaa caggaaaatg      3600
     aacatagtcg atgtaattca tacaccagca actgaattgc aatacgcgtt caagcacatc      3660
     gtatcacata ttcagcagaa gacctttttc aacgaaattc agcagctaaa ggagaacaag      3720
     attttaaaac ccgaatttca aaaactaaat ccgttcctag cagcgactga cggagcaaac      3780
     ggttcgataa cactattacg tgtaggaggc cgcttagcca aggcgcccat ttcactcgat      3840
     gccaaatttc ctgttcttct accaaagaat cattgcttca cattgaaatt tgttgaatat      3900
     ctccaccagc agcacatgca cgctggacca aaggctctca ttggaatcct gcgacttcag      3960
     gcttggattg taaacgcccg agaaatcgtt cgaaagattg tacggcgctg cacacactgt      4020
     taccattaca agcctcgttt aatggaacaa ataatgggat cacttccagt tgatcgcttt      4080
     cattcacaac gacctttttt tgtaactgga gtcgacctat gtggaccatt ttccacatca      4140
     taccgcattc gaagcaaggt gccatataaa acatacatgg ccgtgtttat atgcttttcg      4200
     tcaaaagcaa tccacataga actcatttcc gacctatcta ctaataattt tattctctgt      4260
     ttaaagcgct tcgtcagtcg cagaggcatc ccactacgca tttattgtga caatgcaact      4320
     aatttcgtcg gtgcacgatc gcagctcgag gactttaagc agcagctgtt cgacgaagcc      4380
     aacacattga atgtgcagaa gttcagcagc atcgtgggat tcgagttcaa gttcatccct      4440
     ccgcgtgctc cccactttgg cggcttgtgg gaggccgcag taaagtccat gaagagccta      4500
     atgatgaaaa acttgggcaa cactgggcta acgtacgagg agcttcaaac gattgcaatc      4560
     gagtcggagg caatcttaaa ctcaagacca atggcacccc tctccgaaga cccaaacgat      4620
     ggagaggcgc ttagcccagc gcacttgctg attgggtcct ctttgatgtc cgtaccggag      4680
     ccttcaattg acgagagcag accatcctat cttacgcggt ggcagcgcgt aacgtacttg      4740
     aagcaacagt tctgggagct atggaggcgt gattatttac acacgcttca ggcgcgctcc      4800
     aaatggctca aacccaatgc caacattcaa attggccaaa tggtgataat tcacgaggat      4860
     aatacacctc cccaggaatg gatccttggt cgcatcaccg acacgcatgt cggagctgat      4920
     ggacgagtaa gagtggccga tatcaaggtg aaaaatggaa ccattcgaag acccatctgt      4980
     aagatagcgc ccctgcctga gcaaattggt gcttgaatac tccttggatc attcaacggg      5040
     cggaaa                                                                 5046
//
ID   BEL-3_DBi-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DBi_;
KW   BEL-3_DBi-LTR; BEL-3_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-312
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 816-816 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 312 BP; 98 A; 59 C; 36 G; 119 T; 0 other;
     tgttcgatga catcataagt caatattaat tttgatttaa ttattattat ttttataaag        60
     aactttgttt aagctgctta ataatttgaa ttctttgcca acttgttcta cttaattacc       120
     ccacactgta atcatatgtt tatattttga attcgcctta cgctctttta tacatgcagc       180
     tcacacatgt acatacatac atatctctct tttgtaatct cgaaatcgaa cattaaaaat       240
     cagtgcatat tagaaaccga aacaagtcga acgttttttt ctaataactc tgcattcggc       300
     agagtccgca ca                                                           312
//
ID   BEL-3_DBp-I repbase;    DNA;    INV; 5954 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DBp_;
KW   BEL-3_DBp-LTR; BEL-3_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5954
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 628-628 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4998-5573] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           717..5924
FT                 /product="BEL-3_DBp-I_1p"
FT                 /translation="MAPKRRLSRQQSSSVHDVNDGNDRANSLLSRLESVKG
FT                 DIDRMGEFMQQQIVSIRGSELECRLDILNNYINRAFNLQEEIESINPVLSS
FT                 RAELEDKCVATKSLYMSASVQNQRPPLLNSTLNTTSSHNKNLPRMNLPKFS
FT                 GCYSEYKNFIGLFTSLIDSDPTLSDVEKFNHLLSCLEKEALGTVKAYQITE
FT                 TNYPKALAALNRVYDNQCLIFFDCISRLFDIPSMQGPSALSLRHMIDTVTA
FT                 IYESLLSLGSDKVIANAMLIHIVMTKVDAKTKSRWEESLDFQNIPLWQDCQ
FT                 DALNKRYQHLAADEATSSTQRSRKLGRPNSLKNFSKTSLSVANTTRTQDPK
FT                 CYYCKAVDHYIHACSSFVAATVATRFKFAKTFPLCINCLRKGHSVLSCQSS
FT                 KCRVCSKPHHSLLHRYSSDSSPSELASTQEPIVTQPLTTSAVHHAMTADSN
FT                 QIVLATALVNITGSNGQMHIARVLLDSGSQVNFITEELSKILKLKRDRKDT
FT                 NLLGIGQSAVSARHVVQATIHSRTQAFQLEAELIVLKSISSSQPERAVQVL
FT                 DWNLPDNIKLADPLFHKPQRIDILLGADAFFELLKEGKFKQETYGPVLQNS
FT                 VFGWIVSGRCKSSKTNFKQATSMLSAVQDHCSVDMLIRKFWEIESLPSIAQ
FT                 NKLYTPEQIMCEKAFIESIVRLPSGRLQVSLPFKSSPTCLGSSFEIAKRRF
FT                 LALERRMSNNPEINSMYVAFMKEYISLGHMTLVNDEIPTEPHFFIPYQCVL
FT                 RPQSSSTKLRVVFDASSKTSSQVSLNELLMIGPTIQPCLYATLLRFRLRKY
FT                 AITADIVKMYRQVEITESHRNFQLIVWRQYKDEKLQVYRLNTITYGTACAP
FT                 FLAIRCLKYLSEIYSVSHPLGSLVLSNSFYVDDLLSGADTIEELTSMRNEV
FT                 VEILGSAGLVLSKWATNCEQLIDLNQSTDVSVGEHEDTKALGLVWNPKHDI
FT                 FKFSSREMCTSHAPTKRSMLSLTARLYDPLGLICPVVTKAKILIQQIWLLK
FT                 IEWDDPIPESLQQKWQSITIGLEELDILTIPRHVGTTKNTVCQIHGFADAS
FT                 TEAYGCCLYIRVEHPHGVEVKLLTAKSRVAPLKTKSVPRLELCAAHLLANL
FT                 WEEVRPLIDSPVERVVMWSDSEIVLYWLQTHPSKLKTFVANRVSEIQEMTS
FT                 SASWRHVPTDSNPADFPSRGCTVNELKNSFWFDGPHFLTQDQRRWPQNTKI
FT                 QQINTNEELEIRNITTSHVTTQLEPNPIEKIVENSSSFLKVMRIVAYFLRF
FT                 VNATKSRSWSSLNPTSVELGSAFLLVVSVIQQNAYKSELIKLQKSVKLPDS
FT                 LQKLSPFVVTESIGKLEVSLLRVGGRLFNAQLSYSVKFPLLMPKGNRFVSL
FT                 YIQHLHRTNCHAGPRALVGLIRQTIWLINARRECSAVVRQCVHCFRYKPKL
FT                 ASQIMGNLPADRLIGTRPFAISGVDLFGPIRVSLGIRGKPPIKMYVSIFIC
FT                 FLSKAVHLELVKDLTANTFIMCLSRFVGRRGPIEKLYCDNATNFSGSSRII
FT                 HDLMSKLETHKDAMTAFGAPRRFEFIFIPPRAPHFGGLWEAAVKSAKHLFL
FT                 RAVGNALLKEDELQTVIVEVEAVLNSRPIIADGSSPNDGEAITPGHLLVGT
FT                 SLATLPPASAQANVEPNLSFLQRWHLVSAIKQRFWQDWSRDYLLSLQQRVK
FT                 WNKESPNVTAGTVVAIQEDNLPPQTWLLGIITETITGADGRVRVAIVKTKN
FT                 GIYKRAVHRLAPLPIN"
XX
SQ   Sequence 5954 BP; 1741 A; 1361 C; 1242 G; 1610 T; 0 other;
     aacatttttt ggcgcccccg ggtggactca gaaggacgta tcatcatata tacatagcag        60
     atcagctata cgtacatccg caatctcagt ttgggcttgt actcgacacg ccgctggaat       120
     tcatcgttca tatagcagat cagctttaca tatatacatt caccgtggaa tctcagtttg       180
     ggcttgtact ggacacgccg ctggatttcg ctaatcgcta agtaacaaat tgatagcatt       240
     tcggtaaatg aactacatac ataagcctgc aaaatatcag ccaaggcgta agttttgagg       300
     caaacacgtg tcaagattac aggttggttc tttagttgct tggtgccgtt ctttctctct       360
     tcacatgcac ataccatcgc acacaccaca cacacataca tacagcaaaa atacagttca       420
     tcgatcagag ggagctttga aaatcgttgc agcaccttaa ttgcgcttag cccgagtttt       480
     gtggattcga gttgttcaat ttgtctctct gctgtagagt aacggctcac gcttgcactt       540
     cagctcacat acaattcggg tacagttata acaaagttcc aaagttaaaa taagttcaat       600
     catataacct atcgcaacac tagatagctg tgctttctac ttgagaattc aatttcaatt       660
     aaatcagtgg gtggcaaaga ttcacttata ttgacatttt agcgtaaaat tgcatcatgg       720
     ctccgaagcg acgtttaagt cgtcagcaaa gttcaagtgt acatgatgtc aatgatggca       780
     acgatcgtgc taattcatta ctctcgcgtc ttgaaagtgt taagggtgac atagaccgca       840
     tgggagagtt tatgcaacaa caaatcgtat ccattcgagg cagcgaatta gagtgcagat       900
     tagacatttt aaacaattac ataaatcgtg catttaacct tcaagaggaa attgagtcca       960
     ttaatccggt attgtcctcg cgagctgagc ttgaggataa gtgtgtagcc acaaaatctc      1020
     tttatatgtc agctagtgta cagaatcaaa gaccaccatt acttaactcg acccttaata      1080
     ccacaagctc ccacaataaa aatttacctc gaatgaattt acccaagttt tccggatgct      1140
     actcagagta taagaacttt attggtttat tcaccagtct catagatagc gatccaactc      1200
     ttagcgacgt cgaaaaattt aatcacctgt tgtcatgtct ggagaaagaa gcgttgggga      1260
     ccgtgaaagc ataccaaata actgagacca attacccaaa ggcactggcc gccttaaatc      1320
     gggtgtacga caatcagtgt ttaatttttt ttgattgtat ttcacgcctc ttcgacattc      1380
     cctcaatgca gggtccgtcc gccttgtcac tgcgtcacat gatagatact gtcacagcta      1440
     tctacgaatc cttgctttca ctaggcagtg acaaggtaat agcaaatgca atgctcatac      1500
     acatcgtcat gaccaaagtg gacgcaaaaa ctaagtctag atgggaagaa agtttagact      1560
     ttcaaaacat ccccctttgg caggactgcc aagatgcact caataaacgc taccaacatt      1620
     tagcagcaga tgaagctacg tcaagcacgc aaaggtctcg taagctgggg cggccaaatt      1680
     ctttaaagaa ctttagtaaa acttccttgt ccgttgccaa tactactcga acccaggatc      1740
     caaaatgcta ttattgcaaa gctgtggatc actacattca cgcgtgcagt tcgtttgtgg      1800
     ccgcaacagt cgctacacga ttcaaattcg ctaagacatt cccattgtgc ataaactgcc      1860
     taaggaaagg gcattccgtt ctttcgtgtc aatcctctaa gtgccgcgtg tgttcgaaac      1920
     cacatcattc actgcttcat agatacagct ccgactcttc accgtccgag ctagcttcca      1980
     ctcaagagcc gattgtgaca caacctttga ccacctctgc cgtccaccac gcgatgacag      2040
     ccgactcaaa tcagattgta ttagctacag cccttgttaa cattacaggt agcaatggtc      2100
     aaatgcacat tgctcgtgtg cttttagatt ccgggtcaca ggtaaacttt ataacagagg      2160
     agttatccaa aattctaaaa cttaagcgcg atcgaaaaga cacaaacctt cttggaatag      2220
     gtcaatcagc tgtatcagct cgccatgtag ttcaagcaac tatacactcc cgaacacagg      2280
     catttcaatt ggaagctgaa cttattgttc tgaagtcaat atcatcgtcc caaccagaga      2340
     gggcagttca agtgttagac tggaacctcc ctgacaacat aaagttagct gatccactgt      2400
     tccacaaacc tcagagaatt gacatattgc ttggtgctga cgcatttttc gagttgttaa      2460
     aggaagggaa atttaagcag gaaacatatg gtccagtcct acaaaattcc gtttttggat      2520
     ggatcgtatc aggtcggtgc aagtcatcaa aaacaaattt caaacaggct acctcgatgt      2580
     tgagcgcggt tcaagatcat tgcagtgtag acatgttgat tcgaaaattc tgggaaatag      2640
     aaagtctccc gagcattgca cagaataaac tttacactcc ggagcaaatt atgtgcgaaa      2700
     aggcattcat cgagagtatt gttcggttac cctccggtcg acttcaagtt tcattgccat      2760
     ttaagtccag ccctacttgt ctcggctcgt cgtttgaaat cgcaaaaagg cggttcttag      2820
     cactagaaag gaggatgtcc aataacccag aaataaattc catgtacgtt gcctttatga      2880
     aggagtacat ttccttaggc cacatgacgt tggtcaatga tgaaattcct actgagcctc      2940
     atttcttcat tccttatcaa tgtgtgctca gaccgcaaag ttcaagcact aaacttagag      3000
     tggttttcga tgcatcgagt aagacaagct ctcaagtgtc attgaacgaa ttgctgatga      3060
     tcggaccaac tatacagccg tgtctatacg ctacattgct aaggtttcgt cttcgcaaat      3120
     acgctattac agcagatatc gtcaaaatgt acagacaagt cgaaataact gaatcccatc      3180
     gtaattttca actaatagta tggagacagt ataaggatga aaaattacaa gtctatcgct      3240
     tgaataccat tacatacggc acggcctgcg caccgttctt agctatccgc tgcctcaagt      3300
     accttagtga gatatattca gtttctcacc ctctaggatc cttagtctta tcgaatagct      3360
     tctacgttga cgatcttttg tcaggcgcgg atacaatcga agaacttacg tcgatgcgaa      3420
     acgaagtagt tgaaatctta ggctcggccg ggcttgttct ttcgaagtgg gcaaccaact      3480
     gtgagcagct aatagatctt aatcagtcta cagatgtatc tgtcggggag cacgaagata      3540
     caaaggcgtt aggcctcgtt tggaacccaa aacatgacat ctttaagttt tcttcgcgag      3600
     agatgtgtac aagccatgcg ccaacaaaaa gatctatgtt gtcccttact gctcgcctat      3660
     atgatcctct cgggcttatc tgtcctgttg tcacaaaggc caaaattctt atacaacaga      3720
     tttggctgct taagatagag tgggatgatc caattcctga aagccttcag cagaaatggc      3780
     aatcgatcac aattggtttg gaagagttgg atatattgac aattccaagg catgtaggta      3840
     cgacaaaaaa taccgtatgt caaatacatg gctttgcgga tgcctcaact gaggcatacg      3900
     gatgttgcct gtacatccgt gtcgaacatc cacatggtgt ggaagttaaa ttgcttactg      3960
     caaaatcaag agtggcccct ctgaaaacaa agtcggtacc acgactggag ctttgcgcgg      4020
     cgcacttgct agccaacttg tgggaagaag ttcgtccact gatcgactct ccagttgaac      4080
     gagttgtaat gtggtccgat tcagaaatcg tcttgtattg gctgcaaaca catccttcaa      4140
     aactaaaaac ctttgttgcc aaccgcgtca gtgagattca agagatgacc tcatcggcta      4200
     gttggcgcca tgtacccact gacagcaatc cagcagactt tccatctcgg ggttgtacag      4260
     ttaatgaatt aaaaaattca ttttggtttg atggtcccca cttcttgact caagatcaaa      4320
     ggcgttggcc tcaaaataca aaaattcagc aaatcaacac taacgaagag ttagagattc      4380
     ggaatataac tactagccac gttacaacac aactcgagcc gaatccgata gaaaaaattg      4440
     tcgaaaattc atcttcattt cttaaagtaa tgcgcattgt tgcgtacttc ctacgattcg      4500
     ttaacgcaac aaaatctcgc tcgtggtctt cgctaaatcc tacctcggtt gagctcggct      4560
     cggccttctt actcgttgta agcgtcatcc agcaaaatgc atataaaagt gaactcataa      4620
     aattacaaaa atcagttaaa ttgccagact cacttcaaaa attaagtcca ttcgttgtga      4680
     ctgaatcaat cggaaagctt gaggtgtctt tgttgcgagt aggaggtcga ttgttcaatg      4740
     cacagttaag ctacagcgta aagtttccgc ttcttatgcc aaagggcaac agattcgtga      4800
     gtttatacat tcaacatctg catagaacaa actgtcatgc aggacccaga gcattggttg      4860
     gtcttattcg ccaaacaata tggctcataa atgctaggcg cgaatgtagc gcggtcgtac      4920
     gacaatgtgt acattgcttt cgatacaagc caaaattagc ttcacaaata atgggtaact      4980
     taccagccga ccgtttgata ggaacaaggc cgtttgcaat tagtggagtt gacttatttg      5040
     ggccgattcg agtatcgcta ggaattcgtg gcaagcctcc aatcaagatg tatgtatcga      5100
     tattcatttg cttcctgtca aaagccgttc atcttgaact tgtaaaagat ctcaccgcta      5160
     atacattcat tatgtgctta tctagatttg tcggaagacg tggacccatc gagaaattgt      5220
     attgcgataa cgccacgaat ttctcgggct cgtctcgcat catacatgac ctaatgagca      5280
     aattggaaac ccataaggac gcaatgacag catttggagc acctcgtcga ttcgaattta      5340
     tcttcatccc tcccagagcc ccacattttg gagggctttg ggaggcggcc gttaaatcgg      5400
     ctaaacactt gtttctccga gctgtgggta acgcgttact aaaggaagac gagctccaga      5460
     cggtgatcgt agaagttgaa gcagtgctga attcgcggcc gattatcgct gacggctcaa      5520
     gcccaaacga tggtgaagct ataacccctg ggcacctcct cgtcgggacc agcttggcga      5580
     ccttgcctcc agcatccgct caggcaaatg tggaaccgaa tttatcgttt cttcagcgct      5640
     ggcatctggt gtctgcgata aaacaacgct tttggcagga ttggtcacga gactacttgt      5700
     tgagcttaca acaacgcgtg aaatggaata aggagtcgcc aaatgtaact gctggaaccg      5760
     ttgtcgcaat tcaggaggac aatctgccac ctcagacatg gcttttgggc atcatcactg      5820
     aaacgattac aggtgctgat ggaagggtcc gagtggccat cgtaaaaact aaaaatggaa      5880
     tctacaaacg tgctgtccat agactagcac cattacctat caattgaagc ccttcggcca      5940
     ttcaacgcgg ccga                                                        5954
//
ID   BEL-3_DBp-LTR repbase;    DNA;    INV; 386 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DBp_;
KW   BEL-3_DBp-I; BEL-3_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-386
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 629-629 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 386 BP; 118 A; 74 C; 85 G; 107 T; 2 other;
     tgtttagtcg taacttgttt aaaaaaataa tatgtgaggg aaatacgtag aactcgcaac        60
     ttgggctact tagctatgag acggggcata gcaagctacg agcaaataaa ataaccccca       120
     acgagcccga gctgcaagat atctacgtgt gttccttacg cccatactta tgagaaatat       180
     ttgaattgta ccgcctaaag atattatcgc tctgttaagt actcgttctt gttactcgct       240
     gcgtcgcagt ttcgaakgaa agaakagaag gagcagatag aaactagtaa taaatgaact       300
     tccattgaat tcggttgatg cgtttctact gggaccatag ttgctggcct gaaacaggca       360
     ttttcgcagt ttgccaattt ggagca                                            386
//
ID   BEL-3_DEl-I repbase;    DNA;    INV; 4950 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DEl_;
KW   BEL-3_DEl-LTR; BEL-3_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4950
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 504-504 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4003-4581] - Integrase core
CC   'AGAAG' target site duplication
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3976..4950
FT                 /product="BEL-3_DEl-I_2p"
FT                 /translation="MADLPGIRITEALPFQHSGCDYAGPFILKERRGRNPR
FT                 KTKGYICLFVCLVTSAIHLELATDLSTDTFIACLRRFMSLRGKCSQIFSDN
FT                 GTNFVGAKRALDEMQQLLSSQEHRNTVAQTLATDGIKWNFIPPHSPHWGGK
FT                 WESAVRSVKLHLRRVVGKTILTFEQMQTLIAQISAVVNSRPLCYTPDTDLT
FT                 YLSPAHFLIGRPFTTVPEGDLTHLPINRMDYWQHLQSMYQGFWKRWHQEYL
FT                 TSLQQRHKWNSKERNISVDNVVLVKDSNLPPAAWQLARVLEAHPGPDGFVR
FT                 AVKLKTSTGEMTRPITKLAVLPNSETVFQGGPG"
FT   CDS           join(41..1768,1771..3039)
FT                 /product="BEL-3_DEl-I_3p"
FT                 /translation="MDQLKLLKAARSRAKASITRLLTASQDPRAGSPWELD
FT                 EITVSLDRLNTVWKEFETLSDKMALFDEEEGYVDPAIDNERYEDKYLQANT
FT                 LFHSLKRACEQARESEGESNNGRQSGNLDEASSIASGLGNENLVRFLQQQQ
FT                 ELNERLAEQQTTFLRANSTANVTQNELPKIHIKSFSGDYKEWPAFKNIFES
FT                 TIHSKQHLTATRKFHYLKTYITGEAADLMRHMPITDAAYESAWDRLIERYN
FT                 RPRHIVNTLLDTFVNLPSTSGADVSILRKVTDGATEIVRGLDAAGQTDRDC
FT                 WVIHFILAKIDAETRRRWIEGGRDPESPTVDDLLKFLDRRCEEFELSKSEP
FT                 DKVFQVGSRQNKAKRSSHALVSTEDGACVKCNSKEHKIFICPKFMDLSVEQ
FT                 RRTFVKAKSLCFNCLKFGHVSRRCESKFTCRTCHNRHHSLLHVEDSTAHAA
FT                 VTRTHSRDEEQRDLGAPEDTTVTISNIARVQDTPCAESSYNGSATTTQPQG
FT                 LRKSALPTALVLVRNAKGSHTSCRVLLDSGSELSYISERISEHTMKVRAHV
FT                 LSKITSTLARHNINASALKAFDGLELADSLQSLAPVDILLGSDRVWTVFTG
FT                 KKLFDSQGKIIAISTIFGWVITSIVTTGSSSTTTMHTAIDIDASLRRFWEL
FT                 EDVNQELHRKPENDEVEQHFLKTHTRDPKGRYIVELPFKDPNKQFSDTLQG
FT                 ALARFKGVERRLMQDPNLRSQYVKFMHEYLNLGHMRELPHHPVITQKLRVV
FT                 FDGSFKDTNGNSLNDALHIGPSILRNLFSICIRFRMFKFVFSADIVKMYRQ
FT                 ILVAAKHCSYQRIVWRDDECSPIKRYELSTVTYGTSGGPFSAVRVLDQLAH
FT                 DHQHEFPSNPKNSKRQVLSDVARIFDPLGVLSPVVVQFKILFQELWLLDLG
FT                 WDTELPPKIAEWWNKCRNDLNALQELRMPRFIDNKEDHIELHGFSDASIKA
FT                 YSAVVYSRLVRANGTVSVSLIAAKTRVAPLKQQSLPRLELCELC"
XX
SQ   Sequence 4950 BP; 1400 A; 1231 C; 1150 G; 1164 T; 5 other;
     tatctttggt ccttttcgcc aaataaagta attgattaac atggatcaat taaaactact        60
     gaaggcagca aggagccgtg cgaaggcaag catcacgcgt ttgctaacgg cgtcacaaga       120
     tccacgtgcg ggatcaccct gggaactgga cgaaataaca gtgtcattgg ataggctcaa       180
     taccgtttgg aaggaatttg agacactcag cgacaaaatg gcccttttcg acgaggagga       240
     ggggtatgtc gatccagcca tcgacaacga gcggtacgaa gacaagtact tgcaagcaaa       300
     caccttattt cactcgctaa aacgggcttg cgaacaagca agggagagcg agggggaaag       360
     caacaacgga agacagtctg gcaaccttga tgaagcctca tctattgcat cagggttggg       420
     aaacgaaaat ctggttcgtt ttctacaaca acaacaggag cttaatgaac gtttggctga       480
     gcaacaaact acgtttttgc gggcaaactc gacagcaaac gtaacgcaga acgagttgcc       540
     aaaaatacac ataaagtcgt tctctggcga ctacaaggag tggccagcat tcaagaacat       600
     cttcgagagc acgattcaca gcaagcagca tttgacagcg acacgaaagt ttcactactt       660
     gaagacatac attacgggag aagcagccga cttgatgcgt cacatgccaa ttacggatgc       720
     ggcttacgag tctgcttggg atcgcctcat tgagcgctat aacagaccac gtcacattgt       780
     aaacactctg ctggatactt ttgtaaactt gccttcgacc tccggagcag atgtatcaat       840
     actgcgcaaa gtgactgacg gagctacaga aattgtacgc ggcctggatg cagcggggca       900
     aacagacagg gactgctggg taatccattt cattctggcc aagattgacg ctgaaactcg       960
     gcgcaggtgg attgagggcg gccgtgaccc ggaatcgccg actgtggacg atctactcaa      1020
     gtttttagac cgccgctgcg aggaatttga gctcagcaaa agtgagcctg acaaagtctt      1080
     ccaagtcggc tcacggcaaa acaaagccaa gcgatcgtca cacgccttgg tatcaacgga      1140
     ggacggtgct tgcgttaaat gtaactccaa ggagcacaag atctttatct gcccaaagtt      1200
     tatggactta tcagtcgagc agagacgcac ttttgttaaa gctaaatcct tgtgctttaa      1260
     ttgcttgaag ttcgggcatg tgtcacgcag gtgtgaatcc aaattcacat gcagaacttg      1320
     tcacaatcgt caccactctc tactacacgt agaagattct actgcacacg ccgctgtaac      1380
     caggacacat tcaagggacg aggagcagcg cgacctcggc gctccagagg atacaacggt      1440
     gaccatcagc aacattgctc gtgtacaaga cactccatgc gctgaatctt cgtacaacgg      1500
     atcagctact actacacagc cacaagggtt acggaaaagc gcattgccca cagctctagt      1560
     actcgttcgc aacgccaaag gatcacacac ttcctgtcgg gtgcttttgg acagtggttc      1620
     ggaactgtca tacatctccg agcgaatatc agaacacaca atgaaggtac gtgcccacgt      1680
     actcagcaaa attacctcca cgttggcaag acacaatatc aacgcctcag cacttaaggc      1740
     gttcgatggc ttggagcttg cagattctsa ctacaatcgt tggcgccagt agatattctc      1800
     ttgggcagcg atcgcgtttg gaccgtgttc actggtaaaa agctgttcga cagccagggg      1860
     aagatcatcg ccatttcgac catatttgga tgggtcatta cttcgatcgt gactacaggc      1920
     tcttcatcta caacaactat gcacacggct attgacattg atgcatcact tcgacgcttt      1980
     tgggagctgg aggatgtcaa ccaggaactt catcgcaaac cagagaacga tgaagttgaa      2040
     cagcactttt tgaagacaca cacaagggac cccaaggggc gttacatcgt cgaacttccg      2100
     tttaaagacc ccaataaaca gttttcggat actcttcagg gagcactcgc aagattcaag      2160
     ggagtagaac gccgtctaat gcaagatccc aatttgcgct cacagtatgt aaagtttatg      2220
     catgagtatc tcaacttagg tcacatgcga gaattgccac atcatccagt aattacccaa      2280
     aagttaaggg tagttttcga cggatcgttt aaggatacta acggaaattc cttgaatgac      2340
     gcgctacaca ttggtcccag tatcctgcga aacttattct caatttgtat ccgatttaga      2400
     atgtttaagt tcgtcttctc cgcagatatc gtgaaaatgt acagacaaat cttggtggct      2460
     gccaagcatt gtagctacca gcgaattgta tggagagatg atgaatgttc gcctatcaaa      2520
     cgctatgaac tgtccacggt aacatacggc acgtctggcg gaccattttc ggcagtaaga      2580
     gttttggatc agttagctca cgaccatcaa cacgaatttc cctcaaatcc gaagaactct      2640
     aagcgacaag tgctgtctga cgtggcacgc atctttgacc cgctgggtgt cctatcgcca      2700
     gtggtggtac aattcaaaat tttgtttcaa gaattgtggc ttcttgatct cggctgggat      2760
     acggaacttc ctccaaaaat cgctgaatgg tggaacaaat gccgtaacga cttgaatgca      2820
     ctacaagagc tacgtatgcc aagatttatt gacaacaagg aagatcacat cgaactgcac      2880
     ggattttcgg atgcttctat caaggcgtat tcggcagttg tctacagcag attagtacgc      2940
     gcgaatggta ctgtttctgt gtcactcata gcagcaaaaa ccagagtagc tccgctgaag      3000
     cagcaatcgc taccgcgcct cgagctgtgc gagctctgct agccgactca ttcctcgatc      3060
     aaaaatggtc tacaacacaa ggacatcgtc atacatgcgt ggtggactca accatcgttt      3120
     cggcatggct ttcacaccca ccatcgaagc tcaaaacatt tgtggcaaac cgaacgacgg      3180
     aaatactcga tactatacct cgcaatgcct ggcatcatgt ggacaccaag gaaaatcctg      3240
     ctgactgcgc cacgcgaggc ctgctggctg cagaactcat taattcgacc tgtggtggat      3300
     gggwcctgcg tggctgcaag atcaagaaaa actctggtaa agttgagctg ccaaaggttc      3360
     tgttcttcta tttcagaaaa ccacgktaaa gaagaggtga agaccaccgc actgactact      3420
     caggaggtca tcttattgtc accgatcaag cactgctcag cgggtctcat cctggacaaa      3480
     actggttcgc attgtagctt ackccctacg cttcgtccaa aggatcaagg ctattaagtc      3540
     aggcacgctg acaaattgca aggggctcac ctttgaggag atgcaggctg ctcgcattct      3600
     ttgccttcaa gaggctcaga aatgcttcaa gaacgactac aatctactga tggagaacaa      3660
     gccacttcag agccgctccc agctcatcaa gctttcaccg atcattagca aggacggcct      3720
     tcttcgagtc ggtggacgac tggataattc acaattacca gctgatgtca aacacccaat      3780
     tttgcttccc aaatcgcaca gcattacgag gatgattttg gagcacgagc atgcgtcaaa      3840
     tctgcaccct ggagtttcag cactttttgt catccgccaa aaatattggg tctttggcgc      3900
     acgcaacctc ataaggaatm tggcgcacga ttgcataaat gttttcgcca acgaaatcaa      3960
     acagcacaac aattcatggc cgatctaccg gggattcgca ttacagaagc acttcccttc      4020
     cagcactcag gctgcgatta cgctggacca tttattctca aggaaagaag agggcgaaat      4080
     ccacggaaaa ctaagggcta catatgtctg tttgtctgcc tcgtaacatc agccattcac      4140
     ttggaactgg ccaccgatct cagcacagac accttcatag catgtcttcg tcgcttcatg      4200
     tccctgcgtg ggaaatgttc tcaaatcttc agcgacaacg ggacgaattt cgttggtgcc      4260
     aagcgggctt tagatgaaat gcagcaactt ttatcttcac aggagcatcg taatacagta      4320
     gcgcaaactt tggccaccga tggcataaaa tggaatttca tacctccaca ctcgccacac      4380
     tggggcggaa aatgggagtc agcggtacgt tctgtgaaat tgcaccttcg acgcgtcgtt      4440
     ggaaagacga tcttgacttt tgagcaaatg caaactctaa tcgcccagat aagcgcggtt      4500
     gtgaactcaa gaccgttgtg ctatacacct gacactgacc tcacatactt gtcgccagcc      4560
     cactttctta ttggacgccc atttacaact gttccagagg gtgatctaac tcatttgcca      4620
     atcaatcgca tggactattg gcaacatttg caatccatgt atcaaggatt ttggaaacgc      4680
     tggcaccagg aatacttaac atcgctacag caacgtcaca agtggaacag caaggaacgc      4740
     aacatttcag tggacaacgt cgtgcttgta aaggactcaa atcttccacc agcagcttgg      4800
     caactagccc gtgtgttaga agctcatcct ggaccagatg gatttgtacg cgccgtgaaa      4860
     cttaagacat ccaccggaga gatgactaga cctatcacca agctagcagt attgcctaat      4920
     tctgaaaccg tgtttcaggg cggcccggga                                       4950
//
ID   BEL-3_DEl-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DEl_;
KW   BEL-3_DEl-I; BEL-3_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-230
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 505-505 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 230 BP; 71 A; 42 C; 38 G; 79 T; 0 other;
     tgttgatgaa cgctttgcag ccgttatttt gaattcatat atgtatttgt attcaactta        60
     agttttggta tttttaagtg tcatatacca tttgtgctgc gccacactct tgagattttt       120
     tagtgataag actacagcca aacatgtcgg acacgcagaa accgtctggt taaaataaaa       180
     ataatacagt ccactcaaac tcgggaatta aacgttttaa ttcatcacca                  230
//
ID   BEL-3_Deu-I repbase;    DNA;    INV; 5650 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   06-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_Deu_;
KW   BEL-3_Deu-LTR; BEL-3_Deu-I.
XX
NM   BEL-3_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5650
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..5620
FT                 /product="BEL-3_Deu-I_1p"
FT                 /translation="METTILETLKRQRSNIKRNITRIRGMVDVKEEAEQKS
FT                 PAELQCRLGILESYFKQALSVQSEIETMDSTDSGRADLEDSYITTKLAIQQ
FT                 LLGEDLHNTVFDHISAPSYSAPSRLPRLALPSFDGNHKDYKNFISSFLPLV
FT                 NREQISNIDKFNHLRNCLKGPALEAVAAFPVTGENYAKALERLKDRYDKPA
FT                 LIFVETIASIFKLPPAAAASAQQLRSLIDNASALYSALSSLGSDAQISEAM
FT                 LIYVVMEKCDQQTKTKWNESLDYLTLPSWSQCTQILERHCQFLLSDEQSHG
FT                 SERPRPTRPPARSHNSSFSLTNAPCVYCLAPSHKLLGCDKFKDLNPTARFD
FT                 VVKTHRLCLNCLCRGHQLSSCPSRNRCRTCNKAHHTLLHNNHSLDSSRSHQ
FT                 PYPTAPPLEAATHSHSHSGQKSQVLLATAMVLVKDAFGTYRPGRALLDSCS
FT                 QVNFVTEDFAQRLRLRRERHAVQIRSIGHSQTDIKYCTTASVKSRISSFVL
FT                 SADLCIIPQISYQPDLAIDVSTWKLPENTPLADERFYQSRHVDLLLGTEAF
FT                 FDALTVGKIRLGPQGPLLQKTQFGWVVTGRLQQTAPIEVSTCMALNASSID
FT                 VNLKRLWELEAVDSPPLQKPEHAICEEQYEKTTCLDSTGRIVVKLPFKADP
FT                 TRLGDSFDIARRRFLSMERRLSKSPALRQQYCDFMEEYEKLGHMSPVIHPK
FT                 LHEPHYYIPHHCVLKPSSESTKLRVVFDASCRTSNQLSLNDLLCVGPTLQE
FT                 DLYLQLLKFRLHRYAITADVTKMYRQVNLDIIDRKYQYILWRAFPEDTLRT
FT                 YQLNTVTYGTAAAPFLATRSLNHLADVHQADCPIGAAIIKSSFYVDDLLTG
FT                 ADDLETLRIIKDQVTEILRRGHFPLTKWHSNYVGFMEDHASKKLSSCGEGL
FT                 ASALGVNWNQHKDTLFFKFIPRNHATRITKRSILSTASALFDPLGLLSPLV
FT                 VVAKILLQELWLAGLQWDESVPENIHTAWSKCLESFQTVSILSIPRYCLQH
FT                 KMRSLQLHGFCDASIRAYGCCVYLRSETSTGDVAVQLLTGKSRVAPVKKKS
FT                 LPKLELCGAHLLGQLYAKLKPLLADRKFSVYFWTDSQIVLHWLKQHSVTLS
FT                 AFVGNRISEIQEWTADGQWKFVPGESNPADIVSRGAATTELAASLWFTGPQ
FT                 FLTQPSSQWPTTPQIIDIDPTIVKAEQRRSTFTTAVISNHVLQQLTHISSY
FT                 TRCIRTIAYVFRFANLSRGVKIVNPSLTSEELRRALFSIVYNIQQQSFLED
FT                 FHSLQKAKPLTSHLKYLTPFLDSSSGHALIRVGGRLQNADIPESERHPLLL
FT                 PSKSHFAWIYVRHLHLRNCHAGPKALVALIRLEYWIINARDLARRVVRSCI
FT                 ACVRFRPKLENQLMGSLPLERVLPQQPFQRCGVDFCGPFNTYLRIRGKGPT
FT                 KSYLAVFICLASKAVHIEVVSDLSTKAFLAALKRMIARRSIPTDIFCDNGT
FT                 NFVGAANHLQELRAFLQDKATQEVISSYLSTDFITFHFIPPRAAHFGGLWE
FT                 AAVKSAKSLLYRTLMNSRFTFEELCTITTEVEAILNSRPLSPLSPDPNDFG
FT                 ALTPGHFLVGKSLRALPERTVSSTHASSLERFDAVTASKQQFWRRWSLEYL
FT                 QELRSRTKWTTPSANIRANTMVIIHDDNLPPQRWKIGRVETVVPGKDGLVR
FT                 VAHIRTSTGVCCRPVHKLAVLPTDSQSC"
XX
SQ   Sequence 5650 BP; 1472 A; 1547 C; 1252 G; 1379 T; 0 other;
     ttttggcgcc caacgtgggg cagtgtttaa acaaattatt aacaatttat taattcataa        60
     acaattgtcg aagtatcgcc cgcaacaatt attcgctcga cccgctcatc gcaactcaac       120
     attgtcataa ccgcatacaa aggtgaacat tcaaccctag tgcattcatc gaaagtgaat       180
     aataaataaa caaataaagt tattaactat tcacgaaaat tctaagggca acgtgtcgtt       240
     cgtataacgg aactattcgc gctcttcttc gcacatctct tcgcttgtgt gtgtgtgccc       300
     gcccgctcta taagctcggc gtcgatcgct cattctcctt tgctccgtta ttccgccagc       360
     aaagtgttgt tgttttgttt acatcgccaa ctgcagtcgc tggtaccgtt tttgagttct       420
     agtcgctttc gctttgaact aacttcacgg cattgccaca ttcgtcgctc cgcgttgttg       480
     ttgccgcaac tttactctcg ttctcgcatt cgcattcttc gtcgcagcaa tggaaacgac       540
     tatattggag actctcaaac ggcaacgctc gaatattaag cgcaacatta cgcgcataag       600
     aggaatggtc gatgtcaagg aagaagcaga gcagaaatcg ccggctgaac ttcagtgccg       660
     tttgggaatc ttagagtcat attttaagca agccctttcg gtacaatcag aaattgagac       720
     catggactcc acagatagtg gacgtgcaga cctggaggac agttacataa ctacaaagtt       780
     ggcaattcag caacttcttg gagaggatct gcacaacaca gttttcgacc acatctctgc       840
     accaagctac agcgcgccgt ctcgactgcc aagattggca ctacctagct ttgatggaaa       900
     tcataaggat tacaagaact tcatctcgtc gtttctgcca ctggtcaatc gtgagcaaat       960
     atctaatata gacaaattta atcatctccg taattgttta aagggacctg cactggaagc      1020
     tgtcgcagcc ttcccggtca ctggagaaaa ttatgcgaag gcgctggaac ggctgaagga      1080
     ccggtatgac aagcctgccc taatctttgt cgaaacgata gcctcgattt ttaaactgcc      1140
     gccggctgct gcggcaagtg ctcaacagct ccgcagccta atcgacaacg catccgcgtt      1200
     atatagtgcc ctttcatcgc taggctcgga cgctcaaatt tctgaggcga tgctcattta      1260
     cgtggtcatg gagaagtgcg atcagcagac caaaacaaaa tggaacgaat cactggatta      1320
     tctcactctg ccatcctgga gccaatgcac gcagatactt gagcgccact gccagtttct      1380
     tctgtctgac gagcaatccc atggatcgga gcggccaaga ccgactcgtc cccccgcaag      1440
     atctcacaat tcgtcgtttt cgctgaccaa cgcaccatgt gtatactgcc tcgcaccctc      1500
     acacaaattg ctcggatgtg acaagtttaa ggaccttaat ccaaccgcgc gatttgatgt      1560
     cgttaaaaca caccgtctgt gtttaaactg tctgtgtaga ggtcaccaac tgtcgagctg      1620
     cccatcgaga aatcgctgtc gcacctgcaa caaggcacat cataccctgt tgcacaacaa      1680
     ccattcgcta gattcatctc gctcgcacca accgtatcca accgcaccgc cattggaagc      1740
     tgcaacacac tcgcactcgc attctggcca gaagtctcag gtgttgcttg ccactgctat      1800
     ggttctcgtc aaggatgcgt ttggaaccta ccggcctgga agagctcttc tcgactcctg      1860
     ctctcaagtg aacttcgtga cggaagactt cgcacaacgg cttcgcttac ggagggaaag      1920
     acatgcagtc caaattcgaa gcatcggcca ttcgcaaaca gatattaaat attgcacaac      1980
     tgcatctgtc aaatctcgca tttcatcttt cgtactctcc gcagatctct gtattattcc      2040
     acaaatctca taccagcccg atctggccat cgacgtttcg acttggaagc tgccagaaaa      2100
     tacgccgctc gctgatgaaa gattctacca atcacgccac gtcgatctgc tactgggaac      2160
     cgaagccttc ttcgacgcct taactgtagg gaaaataagg ctgggacctc aaggcccgct      2220
     gctgcagaaa actcagtttg gctgggtcgt aaccggccga ctgcagcaaa ccgcgccaat      2280
     agaagtttcc acttgcatgg ctttaaacgc aagttcaatt gatgtcaacc tcaaacgtct      2340
     gtgggaactg gaagcagtcg actcgccacc tctgcagaag ccggagcatg ctatttgcga      2400
     ggaacagtac gagaagacca cttgtctcga cagcactggt aggattgtcg tcaaactgcc      2460
     attcaaggct gacccaactc ggttgggaga ctcatttgat atcgctcgcc gtcggttcct      2520
     aagcatggaa cgtcgcctat cgaaatctcc agcacttcgt caacaatact gcgacttcat      2580
     ggaggagtat gagaaattgg ggcacatgtc cccagttatt catcctaaac tgcacgagcc      2640
     gcactactac atcccgcatc actgcgtcct caaacccagc agtgagtcta ctaagcttag      2700
     ggtggtgttt gacgcctctt gccggacgtc aaatcaatta tcactcaacg acttgctatg      2760
     cgttggccca acactccagg aggacttgta cctgcagctt ctaaagttca ggcttcatcg      2820
     ttacgccatc actgcagatg tgaccaagat gtataggcaa gtaaatctcg acattattga      2880
     tcgcaaatac cagtacattc tttggagagc atttccagaa gacacgctgc gcacgtatca      2940
     attgaatacg gtaacctacg gcactgcagc cgccccattt ttggcaacac gtagcctcaa      3000
     ccacctcgct gatgttcatc aagctgactg tccaatcggc gccgctatca taaagtcgtc      3060
     tttctatgtt gatgacctac tcacgggtgc agacgactta gagacgcttc gcattatcaa      3120
     ggatcaagtc acagaaattc ttcgtcgagg gcatttccca ctcaccaaat ggcattccaa      3180
     ctacgttgga ttcatggaag atcatgcatc caagaagctc agttcctgtg gcgagggact      3240
     agccagcgct cttggagtga actggaacca gcacaaggat acactgttct tcaagttcat      3300
     accaaggaac cacgcaacgc gtatcaccaa aagaagtatt ttgtccaccg catccgcctt      3360
     gttcgacccg cttggtttgc tctcaccgct tgttgttgtc gcaaaaatac ttctgcaaga      3420
     actttggctc gctggcctgc aatgggacga gagcgttcca gaaaacatac acacggcctg      3480
     gagcaaatgc ctagaatcat tccaaacagt ctcaatttta tcgattcccc gctattgcct      3540
     ccaacacaag atgcgatcac ttcaacttca tggattttgt gacgcatcaa tcagggctta      3600
     cggctgctgc gtgtatctac gctcggaaac gtcgacggga gatgtcgcag tgcagctatt      3660
     gactggcaaa tcgagagtgg ctcctgtgaa gaaaaaatcc cttccaaaac tggaattgtg      3720
     tggagcgcat ttgctgggcc aactgtatgc gaaattgaag cctctattag cggacagaaa      3780
     attctcggtc tatttctgga cggactcgca gattgtgctt cactggctaa aacagcactc      3840
     agtcacactg tcagcattcg ttggaaaccg aatctccgaa attcaagaat ggaccgcaga      3900
     tggccagtgg aaatttgtac caggtgagag caatccggcg gacatagttt cgcgcggagc      3960
     tgctacaact gagctggcag catcgctgtg gttcacaggt ccacagttct tgacccaacc      4020
     atcgtcccag tggccaacca ctccgcaaat catcgatatc gatccaacta ttgtcaaagc      4080
     agagcaacga aggagcacat tcaccacggc tgtgatcagc aatcatgttc tccaacagct      4140
     gactcacatc agctcataca ctcgctgcat tcgaaccatc gcatacgtct ttcgcttcgc      4200
     caacttatca agaggagtca aaattgtcaa tccatcgctt acatcggaag aacttcgccg      4260
     cgcattgttc agcatcgtct acaatattca gcaacagtcg ttccttgaag attttcactc      4320
     gctgcagaaa gctaagccgc ttacaagtca cctaaagtat ttaacgcctt ttctcgacag      4380
     ctcatcagga catgctctta taagggttgg aggacgatta cagaacgccg acatccctga      4440
     atctgaaagg catccgctgc tactgcctag caaatcgcac tttgcgtgga tttatgtacg      4500
     acacttgcat ctgaggaatt gtcacgcagg cccgaaagct ctagtcgcgc taatccgtct      4560
     ggaatactgg atcatcaacg ccagggacct ggctcgtcga gtggtgcgtt cctgtatcgc      4620
     ctgcgttcgg ttcagaccca aactggagaa ccaactcatg ggatcgctac cactagaacg      4680
     agtgctaccg caacagccgt tccaaaggtg tggcgtcgac ttctgcggac cgtttaacac      4740
     atatcttcgc attagaggaa agggtccaac aaagtcctac ctcgccgtct tcatttgttt      4800
     ggcatccaag gccgtccata tagaagtcgt ctcggatttg tcaaccaagg catttcttgc      4860
     agcacttaaa cggatgatcg ccagacggtc aattccaacc gacatcttct gcgacaacgg      4920
     aaccaatttc gtcggagctg ccaaccatct tcaagaacta cgagcgttcc ttcaagacaa      4980
     agccacgcaa gaagtcattt cgtcttattt gtcaactgat ttcataactt tccatttcat      5040
     ccctcctaga gctgctcact ttggaggcct ttgggaggcg gcggtaaaaa gcgccaagag      5100
     tctactctac agaacactga tgaattcaag attcaccttc gaggagctct gcaccataac      5160
     cactgaagtc gaagcgattc tcaactcgcg cccattgtct ccgctgtctc cagatcccaa      5220
     cgactttggg gcacttactc cgggccactt cctggtgggg aaatctcttc gtgcccttcc      5280
     agaacggact gtgtcatcaa cacatgcgtc cagcctggaa cgattcgacg ccgtgaccgc      5340
     gagcaaacaa cagttttggc gaaggtggtc gcttgagtac ctacaggaac tacgctcgcg      5400
     caccaaatgg acaacaccat cggccaacat cagggctaac accatggtca tcatccacga      5460
     cgacaatctg cctcctcagc gatggaagat cgggcgcgtc gagaccgttg ttcccggaaa      5520
     ggatgggcta gttcgagtgg cccacattcg aaccagcact ggggtgtgct gccgaccagt      5580
     gcataagctg gcagtattac ccacggattc tcaatcttgt tgaaagatga tactttcaag      5640
     gcggccggga                                                             5650
//
ID   BEL-3_Deu-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   AFPQ01006736;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_Deu_;
KW   BEL-3_Deu-I; BEL-3_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-277
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01006736; Positions   33499   33775.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 277 BP; 79 A; 54 C; 42 G; 102 T; 0 other;
     tgttcggtca aactcacaat atttttcgtc ttacatactg tttctctttg tctatacaaa        60
     tgtaaacaaa gcttattaac atgtattaac caatctctgt aaattactct gttagaacat       120
     tatgttattt tgccgctgct aataaaaggc agttgctgat gttagatctt ggtaaacggt       180
     tgtctttttc ccgcctgagt ttataaattg taattagttt atgcaccccc caacctgata       240
     tcttgtgcag cacaaaagac gctttgtgca ttaaaca                                277
//
ID   BEL-3_DFi-I repbase;    DNA;    INV; 3126 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DFi_;
KW   BEL-3_DFi-LTR; BEL-3_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3126
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 881-881 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2149-2757] - Integrase core
CC   LTRs are 94% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           418..2970
FT                 /product="BEL-3_DFi-I_1p"
FT                 /translation="MSTDTTLSAPVAGAKYFKLKAGSMLSKAKAFEKALTA
FT                 DKLQEMSEEELELRVQRLDESKTAFFQIHDRLEELDFNEIGSVVRDDFEEL
FT                 FISTKTKLNVELRKRKGSKRHSPLHPGSQPSSEVQRAPVAELTFLSVRTMH
FT                 QLASDEKRGQSTQEVLEINDVRDQIPDSEKETFLKIDDGSDKTLGLAWDPA
FT                 ADVFRFSFSSIQVSPKPSAKAKIFLQQVWRERLEWDKSSPVVLLPSDMGRT
FT                 QQMEFLRRALDPDADGEREVHLLFSKSRVAPLKTLTVSKLEFCAALLLAQL
FT                 MRDVRNMKLFDSAGALSSISYEHSRFQVFVTNQISLIQELSSGMSWHFVPT
FT                 DCNPADILSRGASQSELLESALWFRGPAFLLKNQHDWPESCLPVKTPPEFR
FT                 KRILVGVSTKVDLPLKRNLVNSCQKMTHTFGFEYKFAHRKRRPGLAVKYVK
FT                 MGTQMLIRCIQMSNLADDYWRLHSKQQISSSSPLSSLLPFIDSFGLMRVGG
FT                 RLQNSSLDYNAQHPVILPRQHPVTRAIILDLHRRNLHSGPRALLAHMRLQF
FT                 WPIGGRKTVSAAASKCVICFRAKPQLSQHIMADLPKDRVNATSTSMVTGLD
FT                 FCGPFYYKTGVRSKVPVKTYVCVFICFATKAIHLELVQDLSTQAFLGALKR
FT                 FILTRGKPARIWSDNATNFVGAKNELAELKNLFLSSPHIRAIEEFCLEDSI
FT                 EWRFIPPRSPHFGGLWEAAVKTAKFHFYRSVGPSLLSFDELRTLVCHIAAI
FT                 VNSRPLLPLSENPADLEALTPAHFLGTVPLVLYSEPDVTKLNFNRLDRWQR
FT                 ISYFQQIFWSRCREEYLTLLQQRSKWRTPKPALQINEVVSTLPPFKWPL"
XX
SQ   Sequence 3126 BP; 770 A; 779 C; 728 G; 847 T; 2 other;
     ttttggtgac cccgacgtga tagtgatact gaaacaataa aaattcgaaa aatcgaacaa        60
     ataattttat tattttcgtt cggttaaagt tggtgatcgc gcatatacgt acttcagctc       120
     tgtgtacata agcgcaagct gaaacttcgc tagagtctcg cacacacccg cccccgcgca       180
     tcgtaaagtg cattttcgtt tcctctttgt gccttcgttc ccgctttaaa cgttttacag       240
     cggcgacaaa acgtttgttc gcgggttcat tgcctatatt gcatatgcaa taggcttgca       300
     catagattcc gcttcgtttt cgctggctta gaattttggc gctaatcatt gcacagtgga       360
     acttgatcag tttgcaagtg ataaattctc aaagcaataa aaaccaaatt taacaacatg       420
     tcaacggaca caackctttc tgctccagtt gcgggagcaa aatatttcaa attgaaggct       480
     ggctcaatgc tttctaaagc taaagccttc gagaaggccc tgaccgccga caagctccag       540
     gaaatgagcg aggaggaatt ggaacttcgt gttcaacgcc tggacgagag caagactgca       600
     tttttccaga tccatgacag gcttgaggag ctggacttta atgaaatcgg cagcgtggtt       660
     cgcgatgact tcgaggagct tttcatctca acaaaaacaa aattgaatgt tgaattgcgt       720
     aagcgaaaag ggtccaagcg tcatagccct ttgcaccctg gctctcagcc ttcgtccgag       780
     gttcagcgag ctcccgtggc ggaactaacc tttttatccg ttcgaacgat gcatcaattg       840
     gcgagtgatg agaagagagg gcaatcaaca caggaggtcc tcgaaatcaa cgacgtccgt       900
     gatcaaattc ctgactcgga aaaggaaaca ttcctgaaga ttgacgatgg cagcgacaag       960
     acgctcggtc ttgcctggga ccctgcagcg gatgtttttc gtttttcttt ttcttccata      1020
     caggtctctc caaagccatc tgccaaggcc aaaatcttcc tgcaacaagt ctggagagaa      1080
     aggttggagt gggataagag ctctcctgtt gtcctgttgc catctgacat gggtcgtacc      1140
     cagcaaatgg agtttcttcg acgtgcgttg gatccagatg ctgatggcga acgagaggtg      1200
     catctacttt tttcaaagtc tcgtgtggca cctttgaaga ctctcacggt ttccaaattg      1260
     gagttctgcg ctgccttgct actagcgcaa ctgatgcggg acgtacgcaa catgaagctc      1320
     ttcgattctg ctggagcttt atcatcgata agctatgaac attcacgctt tcaagtattt      1380
     gttactaatc aaatatcttt aattcaggag ctatccagtg gcatgagttg gcacttcgtt      1440
     ccgactgact gcaatccagc cgacatcttg tcaagaggag cttcccagag tgagcttctg      1500
     gaatctgccc tttggttcag aggcccagcg tttcttctca agaatcagca cgattggcct      1560
     gaatcttgtt tgcctgtgaa gactcctccc gagttcagaa agcgcatttt ggttggcgtc      1620
     tctaccaaag tggatctacc cttaaaacgc aatctcgtga attcctgtca aaagatgacc      1680
     cacactttcg gattcgaata caaatttgca caccgtaaaa gacgtcctgg tcttgccgtc      1740
     aaatatgtca agatgggcac tcagatgctc atcagatgta tccaaatgag caacctggct      1800
     gatgactact ggagactgca ttctaagcag caaatttcat catccagccc gttgtcctct      1860
     ctattgccat tcatcgatag cttcggtctg atgcgagttg gtggccgtct acagaattcg      1920
     tccttggatt acaatgcgca gcatcctgtc atactgccac gccagcatcc agttacacgt      1980
     gccattatac tggacttgca tcggaggaac ttgcattctg gtccacgagc tctgctcgct      2040
     cacatgcgcc ttcagttttg gccaataggt ggccggaaaa cagtgtcagc tgcagcgtcc      2100
     aaatgcgtca tttgctttcg tgccaaacca cagctttctc aacacataat ggctgacttg      2160
     cccaaggatc gtgtaaacgc cacgtctacg tccatggtta ctggtctgga cttctgcggt      2220
     ccattttatt acaaaaccgg agttcgaagc aaggtgcctg tgaaaacgta cgtctgcgtt      2280
     ttcatctgtt tcgcgacgaa agcgatccat ctggagcttg tccaggatct ttcgacacaa      2340
     gcatttttgg gagcactgaa gcggtttatt ctcaccagag gcaaacctgc ccgaatatgg      2400
     tcggataatg ccacgaactt cgttggagcc aagaacgagc tagctgagct gaagaatctg      2460
     ttcttatcga gcccccacat tcgagcgatt gaagaattct gcctggaaga ttcgattgag      2520
     tggcgtttta ttccccctcg ttcacctcac tttggaggtc tctgggaggc tgcagtaaaa      2580
     acggccaaat ttcatttcta ccgttctgtt ggcccatcgt tattatcgtt cgatgaattg      2640
     cgcactctcg tttgccacat tgcggcgatt gtaaactcac ggcctttact ccctctttca      2700
     gagaatccgg cagatcttga ggcgctaact cctgcacact ttcttggcac agttccactg      2760
     gtgttgtact ctgagcctga cgtcacaaag ctgaacttca accgtttgga ccgctggcag      2820
     agaatttcct acttccaaca aatcttctgg tcacggtgtc gtgaagagta cttgaccctg      2880
     ttacagcaac ggtcaaagtg gcgcactccc aaacctgcgc tacaaatcaa cgaggtcgtc      2940
     tccactttgc ctccatttaa atggccatta sccagggtca tggaattggt gcctggatcc      3000
     gatggagttg ctcgtgtggc agtgatacga acttcaactg gaatcactcg aagggctgtc      3060
     cgcaagctgt gcgtgctgcc gaagctggat ctggttgaaa gccctggtct tccaacgggg      3120
     ggagaa                                                                 3126
//
ID   BEL-3_DFi-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DFi_;
KW   BEL-3_DFi-I; BEL-3_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-344
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 882-882 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 344 BP; 103 A; 88 C; 62 G; 91 T; 0 other;
     tgtactcgct cacagaaggc acgatcgctg atcgcctgcc aaatctcggc ttatatactt        60
     tcgtctaaag cacagacaaa tcggtctgcc tgctaacata ccttttcgct gcaaaaaggc       120
     acagacaaat cggtctgcct gcccaacata ccctttcgct gtaaaaaggc acagacaatt       180
     cggtctgcct gcctaactaa atctacaaca aacaataact ttgtacattt aaggccttgg       240
     tgccagtaat aaataagtgc attatttaag ccgaaatttg tgcgttttat tttacttggg       300
     caccgccaag gtaatggtct ttgaaaaagc tcactgaccc aaca                        344
//
ID   BEL-3_DGri-I repbase;    DNA;    INV; 5418 BP.
XX
AC   scaffold_14822;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DGri_;
KW   BEL-3_DGri-LTR; BEL-3_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-5418
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_14822; Positions  773933  779350.
XX
CC   Positions [4588-5019] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1798..2973,2977..4470)
FT                 /product="BEL-3_DGri-I_1p"
FT                 /translation="MACEQFKALDALQRFDVVKRHRLCLNCLSKGHQMADC
FT                 PSTNRCRHYQKSDHTLLHKKLRSTTQPSSSPATEVAHNHSQIKKRYQSHVL
FT                 LATAMILVRDSTGTYRLGRALLDSYSQVNFVTDSFAQKLRLKREKHVVQIS
FT                 SIGHARTEITSLTTISIRSRLSPFEVSLDLCVTSHIAYQPDINIDISRWKM
FT                 PQNIVLAGEKFYQSRHIDMLLGTEAFFDILSVGQVKLDITGPMLQKTLFCW
FT                 VVTGKCHPQQSREIAASFKLGATSIDDHLKRLWEIESIETSNVLLKPEHRA
FT                 CEEHYLKTTVTNDSGRIVVRLPFKNNPSQLGHSFDIARRRFLSLERRLAQS
FT                 SGLRLQYCQFMEEYEHLEYMSLVTEPHLSEPHYYIPHHCVLKPVFDVSCTS
FT                 NQTSLNDHLLVGPTLQDDLYLLLLRFRLHRYAITVDGTKMYRQVNVDLNDR
FT                 KYQYILWRALPDEPLRTYQLNTVTYGTASAPYLTIRSLHYLANLCRTEYPI
FT                 GAVIESSFYVDDLLSGGEDIETLRTIKDQVTKILHRGHFPLSKWHSNHAQF
FT                 IENFAIKDINTCDNGLTSALGVSWNQHTDMLLFNFKPKIVSSTVTKRTILS
FT                 IASALFDPLGLVSPLIIVAKIILQELWIAGLTWDESVPQHLELAWKKCLES
FT                 FQTISSLAVPRYCKQVNQSSFQLHGFCDASIRAYGCCIYVRSESACGNIGV
FT                 HLLTAKSRVAPVKKKSLPKLELCEAHLLAQRRATCRIFLVGFANCFTLAKI
FT                 TLRHVINICRKSSFWSWRFVPTTSNPADIVSRDATTSDLQSSIWLSGPAFL
FT                 TQYHEHWPTSSNISNIDMQVINAEQRKSTFVATTDRNHVLEKLANISSYNR
FT                 CVRTVAYMLRFVQITHMNLRNCHAGLKAFVALIRLEY"
XX
SQ   Sequence 5418 BP; 1519 A; 1288 C; 1098 G; 1513 T; 0 other;
     ttttggcgcc caacttcgca tttcgttacg ttaacaaatt ccgcgtgcgc gtatatacaa        60
     actaaacaaa ttcgccttgg cttccaattg cttggttgca acaattaaag catcaaattc       120
     gtcgcatgtg aaaatagtta accagaacca acacaaagtt catcggttat tgcattgtgt       180
     ctctatattc gttttgctgg ctgtctgcgc cgttttcgct catggtctac tttgttcgcc       240
     gctcttattg catatttcgc tactgctaaa acggccagtg cgctgctcgc aatcgtcgct       300
     tcattcgctg cctttagtgg tttatcccaa attcattctt cgttcgtttg tgtaagagct       360
     gcaactgcga tcgatactgt tgtagttcat atacacacat acacacaaca atcattttcg       420
     tcgtttttgg cgcatcaagc agaacttaag ctccgcgcca agttctgtaa atatgtcgca       480
     ttccttggaa gactaccgac gccagcgcgc aaacaccaaa aggaacattt cccgaaaaaa       540
     aattttggtc gatggacaat ctgcagattc ttctaaaaga tcacctgcgg atcttcaatg       600
     tcgtttaggc attttggaat cgtattttaa gcaatcgttg gctattcaat cggaaataga       660
     aactctgtat ccaaatgata atgcgtgcgc tgaactggaa gacaactatg tacacatcaa       720
     gttggcgatt aagaaattgc ttggtgaaga cttaaatagt acagtcactg atgacgctac       780
     atcacacgtt gcttaccatc ctcaactatc acgtctgcct tttttggcct tgcccacatt       840
     cgatggcaat catctggaat ataaaacttc atttgctcgt ttaatcaaat cgtgaaagga       900
     gcgcaaataa caaacattga gaagtttaac tatctactca gctgcttaaa gggtgttgca       960
     ctggagtgga atcgtatttt aagcaattgt tggctattca atcggaaata gaaactctgt      1020
     atccaaatga taatgcgtgc gctgaactgg aagacaacta tgtacacatc aagttggcga      1080
     ttaagaaatt gcttagtgaa gacttaaata gtacagtcac tgatgacgct acatcacacg      1140
     ttgcttacca tcctcaacta tcacgtctgc cttttttggc cttgcccaca ttcgatggca      1200
     atcatctgga atataaaact tcatttgctc gtttaatcaa atcgtgaaag gagcgcaaat      1260
     aacaaacatt gagaagttta actatctact cagctgctta aagggtgttg cactggagtg      1320
     cgtgaaggca tttccagtca ccaatgaaaa ctacgctaag gcattcgaaa attaaagtct      1380
     cggtatgaca agccaataga gacaatatcg tctatttttc agttgccttc agctagttca      1440
     tcaaacgcta ctcagctacg gtcgttaatt cataatgcat cggcattatt tagttcactt      1500
     tcgtccttgg gctctggcat cgacatagcg cgagtcatgt taatctatgt ggttctggat      1560
     aaatgcgatc aggaaactag aaacaaatgg aatttatcgc tggattatac aaaaatcccg      1620
     agttgagctc agtgcgtaca agtactggag cgtcattgtc aattcctgtt gtccaaaggt      1680
     acaacaatta accaaacgta ttcaaaacag tttcgtaatc ctggcaaagg acataattcg      1740
     tctttcgcac ttgctatcgc tgcttgtgca ttgtgctcaa gttcaactca caaattgatg      1800
     gcttgcgaac aatttaaagc attggatgcg ctgcaacgtt ttgacgtcgt caaacgtcac      1860
     cgactgtgtc ttaattgctt gtccaagggt catcaaatgg ccgattgccc ttcaacaaat      1920
     cgctgtcgcc attatcagaa atcggaccac actttgttac acaagaagct acgttctaca      1980
     acacaaccaa gctcttcccc agccaccgaa gtagcacaca accattcgca aatcaaaaaa      2040
     cgttatcaat ctcacgttct tttagcaacg gctatgatcc tggtcagaga ttcaactggc      2100
     acctacagac taggccgtgc tctactggac tcgtattcgc aggtgaattt cgtcaccgat      2160
     tcgtttgctc agaagcttcg tctaaaaaga gagaaacacg ttgtgcaaat cagcagtatt      2220
     ggccatgcac gtacagaaat cacttcgctt acaactatat caataaggtc tcgtttgtcg      2280
     ccctttgaag tttcgttaga cctttgcgtc acctcgcata tagcctatca gccggacatc      2340
     aatatagaca tttcaagatg gaaaatgcca caaaatattg tgctggcagg tgagaaattc      2400
     taccaatctc gacacatcga catgctttta ggaacagaag cattcttcga cattctgtca      2460
     gtgggccaag ttaaacttga tataactggg cccatgctcc aaaagacgct gttttgttgg      2520
     gtagtgacag gaaagtgtca tccgcaacag tctcgagaga ttgctgctag ttttaagctt      2580
     ggtgccactt caattgacga tcaccttaaa cgcttatggg aaattgaatc aattgaaact      2640
     tcaaatgtgc tgttgaaacc agaacatcga gcttgtgagg aacactacct aaaaacgact      2700
     gttacaaatg acagtggtcg cattgttgta aggctaccgt ttaagaacaa tcccagtcaa      2760
     cttggtcatt cattcgacat agcacgccgc agatttctca gcttggaacg ccgtttggca      2820
     caatcttcgg gacttcgctt gcagtattgc caattcatgg aggagtatga acatttggaa      2880
     tacatgtcgc tggtcacaga accacactta tcggaacctc actactacat acctcaccat      2940
     tgcgttttga agcccgtctt cgacgtctcg tgttgaacat ccaatcaaac ttcgctcaat      3000
     gatcatttac ttgtcggccc gactctccaa gacgatttat atttgctgtt gttgcgtttc      3060
     agattacatc gttatgccat aacagttgat ggaaccaaga tgtataggca agtaaatgtt      3120
     gatttaaatg atcgcaaata ccagtacata ctctggcgag ctcttccaga tgaaccactt      3180
     cgcacttatc aactcaacac ggttacatat ggaacagcct cggcgccata cttaaccata      3240
     cgcagcctgc attatttggc aaatctgtgt cgaactgagt atccaatcgg tgctgtcatt      3300
     gaatcgtcgt tctatgtaga tgacctgtta tctggaggtg aggacataga aactcttcgc      3360
     acaatcaagg accaagtcac gaaaattctt catcgtggtc actttccgtt atctaagtgg      3420
     cattcaaatc atgcccaatt tatcgaaaac ttcgctatca aggatataaa tacgtgtgac      3480
     aacggactga ccagcgcact tggcgtcagc tggaatcaac acaccgatat gctgctattt      3540
     aatttcaaac cgaaaatcgt ttcgtcaacc gtcaccaaga ggaccattct gtcaattgca      3600
     tcagcgttgt tcgaccctct cggactagtg tcaccactca taatcgtcgc aaagataatc      3660
     ctacaggagc tctggattgc agggcttact tgggacgaat cggtaccaca gcatcttgaa      3720
     ctggcctgga agaagtgcct ggaatcattc caaaccattt catcacttgc tgtaccccgg      3780
     tactgcaaac aggtcaacca aagctcattt caattgcatg ggttctgcga cgcttcgatt      3840
     cgagcgtacg gttgttgcat ctacgtgcgg tcggaatctg cttgcggaaa cattggtgtt      3900
     catcttctca ctgccaagtc cagagtggcc ccagtaaaga agaaatcgct tcccaaactg      3960
     gaattatgtg aagcacattt gttagcacag cgaagagcca catgccgtat atttctggtc      4020
     ggattcgcaa attgttttac attggctaaa ataacactca gacacgttat caacatttgt      4080
     cggaaatcga gtttctggag ttggagattt gtaccaacga catcaaatcc tgctgacatt      4140
     gtttctcgag atgccaccac ttctgattta caatcatcca tatggctctc aggaccagct      4200
     tttttaaccc aatatcatga acattggcca acatcaagca acatcagcaa cattgatatg      4260
     caagtaatca atgccgaaca acgtaaatct actttcgtcg ccacaacgga tcgtaaccat      4320
     gtcctggaga aactagcgaa catcagctca tacaatcgtt gtgttcgcac tgtcgcttac      4380
     atgctgcgct ttgttcaaat cactcatatg aatcttcgca actgccatgc tggacttaaa      4440
     gctttcgtgg cactcattcg attggaatat tgaatcgtaa acgccagaga cttggcacgt      4500
     cgcatcgtgc acacctgcat ggcgtgtgtt cggtacaagc caaaattgga aaggcagctt      4560
     atgggatcgc tgccagtgga gcgccttcaa tcggaacacc cattccaacg ctgtggtatc      4620
     gacttctgtg agccaataaa tacgtatgtt cgcatactag gaaagggtcc cacaaaatct      4680
     tacttggccg tattcatttg tttggcatcc aaggcggtgc acatcgaagt ggtctgtcaa      4740
     ttatccacga agacattctt ggctgcactc aaacgaatgg ttcctcggcg agcgctgccc      4800
     actgacatat attgtgataa tggaactaac ttcgtgggtg cagcaaatga gctaaaggct      4860
     ttgaaacaat ttttgtttga tcaatctatt caagacgcaa tatctgaata ctgtgcttcg      4920
     gatttcgtgt cgtttcattt tattccgccc agggcacccc actttggcgg actctgggaa      4980
     atagcagtta agagcgcaag acgctatcga acactcgcat aacatttgag gagttctgta      5040
     cgatcacaac agagatcgaa gctgtcctca attctcgccc attgtcacct atgtcgcctg      5100
     atcccaacga tctatcagta atcaccccag gacaccccgg gctcgaacca aatggacatc      5160
     atcgtcgtca aatctcgcta ctggaaccat gacgacaatc ttccgcctca gcaatggaag      5220
     ctcggccgca tcgaagcact tgtgcctgga aaggatggtc atgttcgagc tgttcatctt      5280
     cgtatagcca atggcatctg ctgccgacca gtacacaaat tggccatctt accgatggag      5340
     gcttgatgtg ttgaaagcag atcctttcaa ggtggccggg atgtttggtc caactaattc      5400
     aaacattcaa tttatcgc                                                    5418
//
ID   BEL-3_DGri-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   scaffold_14822;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DGri_;
KW   BEL-3_DGri-I; BEL-3_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-226
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_14822; Positions  773707  773932.
XX
SQ   Sequence 226 BP; 81 A; 38 C; 35 G; 72 T; 0 other;
     tgctttgcat aactctggtg gatcttattc acttatgtaa acactacttg taattttagt        60
     aattatcgat agttcactat cgaattagcc caaattgtaa taataaagag aacaagcaat       120
     aatcgcacct ttgtgtcaga aaataaagtt gttaattaaa atagtttaaa taccgcccag       180
     acttgaagtc tcatggttgc ataaaaaacg ctttgtgcaa cgaaca                      226
//
ID   BEL-3_DMoj-I repbase;    DNA;    INV; 7491 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DMoj_;
KW   BEL-3_DMoj-LTR; BEL-3_DMoj-I.
XX
NM   BEL-3_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7491
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1257-1257 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4946-5527] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..2334
FT                 /product="BEL-3_DMoj-I_1p"
FT                 /translation="MEGLINNQTTLGEEIQALIRNYKKDPQERKSNATYFH
FT                 NKAAHLNQLWTAFDQGNEKIRNLMAENPVENSYVREGYFSKIKDIVIKYQE
FT                 EFSKXLNELSPPDTARSDLIPLQRHQTALLAALQRMIGQITQESQARFRPL
FT                 VKEYWEKINHIHFEIFRLFEDPIALGYNMENYLNAEAAIFQIQSTPIDVKP
FT                 SINAAAAQTQVQLPKVSIPQFDGCYLKWQQFHDLFTKMIHESTLPTVQKMW
FT                 YLKSNLSGDAERLVRHLDLTESNYETAWTMLKERFDNKRVLTTTTLHKLLD
FT                 QPPVTNDASSIKSFHDIIQETLATLRNGGIEVNNWDPLLLVLLARKLDRTT
FT                 HVLYEQSIKDTRKLQPIKEFLAFLEQRFLALEAIGGKQYVPKEKQRICASA
FT                 STEKSKGCQFCDSAEHRIYRCDKFASKSGDARLKWALNQKLCLNCLRPNHM
FT                 AKSCFLRNCMKCNKKHNTLLHLENKDDVKITAAAHSTINNYVLLATARVEV
FT                 HGNNGQYGSFRALLDSGSQINMISERAVKTLSLAVKNSTMRIEGIGGNPSS
FT                 MKSRVNVLIKSQNGSYTTRVEAFVLPHIVADQPNHKIDNISWVPSNIPLAD
FT                 PTFAKPGKIDLLLGAEHYFELILPEQIKRSPKLPMMQNSKLGWIIAGRVNR
FT                 STSTVATCS"
FT   CDS           2338..7464
FT                 /product="BEL-3_DMoj-I_3p"
FT                 /translation="QLQLMTNYLLERFWKLDNLESTQPYRTPAESHCETHF
FT                 KENIQRAVDGKLIVKLPYSEDVSELGESRELAIRRFLALEKRLCRDPDLQG
FT                 NYVEFMKDYEKLGHMKEVTPQMVPKSHYFIPHHCVLKPDSSTTKLRVVFDA
FT                 SAKSSSGKALNDILYAGPTVQSELFSILLRFRTHKYVFTADIEKMYRQIWM
FT                 NPADQFHQMIVWRNSPQEQLKYYRLKTVTYGTTSAPFLATKCLQHLANSSK
FT                 DQYPVGAKAVEYDFYVDDCLTGADSITEAIRLRDEVNKILLPAGLRLRKWC
FT                 ANHDQILAGISKEDTTQMVKLDNTEDNSIKTLGLTWSPKSDSLHGRAEAAK
FT                 ATKITKRAVCSELAKIFDPLGIFAPVVVRAKIFMQQLWESKIGWDEELSPS
FT                 LQQDWKIYRDDLQSLNKLKIPRHMFDGKIPVAREIHTFVDASEKAYGAATY
FT                 IRATYKDNGITVRLLCAKSKVAPLSRQSLPRLELCAALLGAELTARVRKDL
FT                 NMKSSCNPAYLWTDSRIVLSWINSQSSSLETFVANRVAKIQELTIATQWRH
FT                 VSSQNNAADILSRGTLAKNLDSTTLWLHGPLFLHGSPSKWPEPFVKMPSAN
FT                 DTLGRKGNPRAVAAPVAKTCDVIYSINHNNSFRRLQRIIAYIMRLRHPNKN
FT                 GNTLTHEELERARIVILRKIQQVDFPEELTNLTKHGVVDSKSNLKSMTPFL
FT                 DKDNIIRVGGRIEKSALSFDEKHPILLPHNDPIVKSLLRELHIDNMHCGPQ
FT                 ALLAKSRQNYWILKGKTLARNITQNCVRCTRAKPKMFQQLMGNLPELRVSP
FT                 ARPFKNAGVDYCGPFWIHHKVRGRRPDKAYIAIFCCFATKAIHMETVSDLT
FT                 TDKFIAALKRFMGRRGNCQTLHCDNATNFVGANNKLKELEDAIYSDKAKDS
FT                 ILAECHKTNVKFHFIPPRAPHFGGLWEAAVKSAKHLLLKNVSTASLTYDEL
FT                 ETVVIEIEAILNSRPITPMSTDPNDLAALTPGHFLIGEPLTAQAHDAERED
FT                 GRSLGQRLELIQHLKHTFWTRWSQEYLHELQQRTKWTRSTANVSEGMLVLI
FT                 KEDNVPCRQWPMGRIQRVYTGPDNHIRVVDVKTAHGTFKRPIHKLAPLLAI
FT                 DEPQHKHPLEDISQXDPSANQKAKRLRTPWTPSLTTMLLTIILFLPLILTQ
FT                 SINITYFESKPGIYYERIGSARLAVADWTIIAYYDLEPYWNEMKTFSKGTN
FT                 SVKKLCADLSITVPCQSVYQHFKHVENELLAENELLQQARPKRAPLDIIGN
FT                 IASSLFGVLDSTYAKEMSETILKVKQNEDYLVSVLKNQTSFVDSTFNVLKR
FT                 DEATXERRLNNMEDQLNAMITEKAQHNLFHWYISLTTQLTLTAANLQRMQT
FT                 EIIKVLTDVRHNTISPLLLSPSQLRDQLEQMKDHLKIGQQVPSTNGNVLQL
FT                 YKMMQAEGAIVNRHAVFKITLPLISTQILELYNLIPIPVVSSRGITKISIS
FT                 VPLIAVNDHRDEFLSLTHEEFRHCHPLQASEHICYHKQSLFRMEHCCEFLM
FT                 FNNKTSDNCKTSTTNHSLSWANMFFKNQWIFATRTPMDLSAVCPDGTSSIG
FT                 LRDAGLLIMKSGCNIRNADMIITGHSTSTSTMYSSYMRFGNLTTQPPHQNP
FT                 SLNKSRELLEANNLKNMHLIPAPEIQLPQWISPINHSVIMSYVALAASLIL
FT                 LALYFSRRINQAGPTTPRTQDGISAPAIGQDAFRIDISDS"
XX
SQ   Sequence 7491 BP; 2613 A; 1661 C; 1474 G; 1737 T; 6 other;
     ttttggtgac cccgacgtga aggaagacga atttttagaa atcatagcgt tcatttggcg        60
     aaccctattt ctaaatcaac cggtagackt ggtcaactta acgaccaaca tcttcataac       120
     caaacaaaat acagtggatt catttggcga atcctatatc ttcgaattga tcaacaagtg       180
     gtcaaactaa gcgctgaatc ggcctcaact caatcaacca gactcaccag gattgtcatc       240
     ttggcgacaa gtcagcatag gcatcagcac tacgcatcat tctgattaat caaacatcag       300
     acaacaagaa ttaagaaaaa agaaacgaat ttaataaaaa ataaaacaaa caaattaata       360
     atggagggtt taattaataa ccaaaccacg cttggtgagg agatccaagc tctaattagg       420
     aactataaaa aggatcctca ggaacggaag tcaaatgcaa catacttcca taataaggct       480
     gctcatttaa atcagctctg gactgctttc gatcaaggaa atgagaaaat aaggaatcta       540
     atggcggaaa atcctgtgga gaattcttat gtaagggaag gttacttctc aaagatcaag       600
     gacatcgtaa ttaaatatca ggaggaattt tccaaaaawt tgaacgagct aagccctcca       660
     gatacagcac gctcggactt gatacctctc caaaggcatc aaaccgcgtt actagcagcg       720
     ctacaaagaa tgattggtca gataacacaa gagtcacagg cccgattcag gccccttgta       780
     aaagaatatt gggaaaaaat aaaccatatt cacttcgaga tcttcagact gttcgaagat       840
     ccaatagctc ttggatacaa catggaaaat tatttgaatg cagaggcagc catattccaa       900
     attcaatcca cacctattga tgtgaagcca tcaattaatg ctgcagccgc ccaaactcaa       960
     gtacagctac caaaggtatc cataccacaa ttcgacggat gctatttaaa atggcaacaa      1020
     tttcatgatt tattcacwaa aatgattcat gagtcaacat tgccaacagt acaaaaaatg      1080
     tggtacttaa aatcaaacct ctctggagat gctgaaagac tggttagaca cttggatcta      1140
     acagagtcca actatgaaac tgcctggacg atgctgaagg agcgttttga caacaagcga      1200
     gtcctgacta caacgactct acacaaactt ttggatcaac cgccagtgac aaacgatgca      1260
     tcatcaataa agagtttcca cgacattatt caagaaacgt tagctacgtt gagaaacggc      1320
     ggcatagaag tcaacaattg ggatccactt ttgctagtgc tactggcaag aaaattggat      1380
     aggactactc atgtactgta tgagcaatcc attaaggaca caagaaaact acaacccatc      1440
     aaggaattct tagccttctt agaacaaaga ttcttggcac tggaagcgat aggagggaaa      1500
     caatacgtcc ctaaagaaaa gcaaaggata tgcgcgtctg cctcaacaga aaagagtaaa      1560
     ggctgtcaat tctgtgattc agcagaacat agaatttatc gatgtgacaa gttcgcgtca      1620
     aaatctggag acgcacgttt aaaatgggca ctaaaccaaa aactgtgcct aaactgtctg      1680
     cggcccaatc atatggcaaa atcatgcttc ctacgcaact gcatgaagtg caacaaaaaa      1740
     cataatacgt tgctacacct ggagaacaaa gatgacgtca aaataactgc cgcagcacat      1800
     agtacaataa ataattatgt gctactcgcc actgctcgag tcgaagtgca tggaaacaac      1860
     ggccaatatg gaagtttcag agcactcctg gattcaggct ctcagataaa catgatctct      1920
     gaaagagctg taaaaacatt atcacttgca gtcaaaaact caaccatgcg aatcgaaggc      1980
     attggaggaa acccaagttc aatgaaatcc agggtcaatg tcctcataaa atctcaaaat      2040
     ggaagttaca cgacacgagt agaggcgttc gtgttaccac atattgtggc ggatcaacca      2100
     aaccacaaaa tagacaacat atcttgggta ccaagcaaca taccactggc ggacccaacc      2160
     tttgcgaaac ctggaaagat tgacttacta ctcggagccg aacattattt cgagctcata      2220
     ctaccggagc aaatcaaaag gagcccaaaa ttacctatga tgcaaaactc taaactaggc      2280
     tggataatag ctggaagagt taacagatca acttcgacag tcgccacatg ctcgtagcaa      2340
     ctacaactga tgaccaacta tctattggaa cgattttgga aactggataa tctggaatca      2400
     acacagccct atcggacacc agcagagtca cattgtgaaa cacattttaa agagaatata      2460
     caaagggcag ttgacggaaa attgatagta aaattacctt attctgaaga tgtgtcagaa      2520
     ctgggagagt cccgggagct agctataagg cgtttcttag cattggaaaa gagactgtgc      2580
     cgtgatccag acctacaagg caactacgtg gaattcatga aggattacga aaaactcggc      2640
     cacatgaagg aagtaacacc gcagatggtt ccgaaatcgc attatttcat tccgcatcac      2700
     tgtgtgttga aaccagatag cagtaccaca aaactacgag ttgtgtttga cgcttctgct      2760
     aaatcatcgt caggcaaggc cctaaatgat atactgtacg ctgggcctac ggtacaaagt      2820
     gaattatttt caattctact gcgttttaga actcataaat atgtttttac cgctgacatt      2880
     gaaaagatgt atcgtcaaat atggatgaat ccggcagatc agtttcatca gatgattgtc      2940
     tggagaaact cacctcagga acagcttaag tactaccgac taaaaactgt cacatacggc      3000
     acaacatcag ccccattttt agcgacaaaa tgtttgcagc atttagcaaa ttcaagcaag      3060
     gatcaatatc cagtcggagc aaaggcagtg gaatatgact tttatgttga tgactgctta      3120
     acgggagcag actcaataac ggaagccata agacttcgag atgaagtcaa caaaatactt      3180
     ctaccagcag gattaaggct tcgaaaatgg tgtgctaacc atgaccagat tctcgcggga      3240
     atttctaagg aagatacaac acaaatggtg aaattggata atacggaaga caacagtatt      3300
     aagacattgg gccttacatg gagtccgaaa tctgacagcc tgcatggacg agctgaagcg      3360
     gcaaaggcaa cgaaaatcac aaaaagagcg gtatgctctg aattggcaaa aatatttgac      3420
     cctctaggaa tctttgcccc agttgtggta agggcaaaaa tattcatgca acaactatgg      3480
     gaatcaaaaa ttggatggga cgaggagtta tcgccaagcc ttcagcaaga ttggaaaata      3540
     taccgagacg atctacaaag tcttaacaag ctcaagatcc ctcgacacat gtttgacgga      3600
     aaaattccag tagcacggga aatacatacc ttcgttgatg cctcggaaaa agcatatgga      3660
     gctgcaacgt acattcgggc gacatacaaa gacaatggaa taactgtacg cttgttatgt      3720
     gcgaaatcta aggtagcacc attatcaagg caatcactgc ctcgtctgga actctgtgca      3780
     gcactattag gagcggaact tactgctcga gtacgaaagg accttaatat gaagagtagc      3840
     tgcaatccag catatttatg gacagattca agaattgtac tatcatggat aaattcacaa      3900
     tcatcaagtt tggaaacttt tgtcgcaaat agagttgcaa aaatccagga attgactata      3960
     gcaactcagt ggcgtcatgt ctcctcacaa aacaacgctg cagatatact gtcacgagga      4020
     acattagcga agaatctgga ttcaacgacc ttgtggctac acgggccatt attccttcat      4080
     ggatcaccat caaaatggcc agagccgttc gtcaaaatgc ccagcgctaa cgacacattg      4140
     ggacgaaagg gaaacccaag ggctgtagca gctcctgtcg caaaaacatg tgatgtaatc      4200
     tattccatca atcacaataa ttccttccga agactacaac gcattatagc atatataatg      4260
     cggctacgac acccaaacaa aaatggtaat acactcacac atgaggagtt ggaacgtgcc      4320
     aggattgtta tattacgcaa gatccaacag gtagacttcc ctgaggagtt gacgaacctc      4380
     acaaaacatg gcgtagtaga cagcaaaagc aacctcaaat ctatgacacc gtttctagac      4440
     aaggataaca tcatacgagt gggcggtagg atcgaaaaat cagctctatc atttgatgaa      4500
     aaacatccga tattgttacc acacaatgac ccaattgtca aatctctgtt acgagaactc      4560
     cacatagaca acatgcactg tggaccacaa gcactacttg caaagtcaag gcaaaattac      4620
     tggatactta aagggaaaac attagcacgg aacattactc aaaactgcgt ccgatgtact      4680
     cgagcaaaac caaagatgtt tcaacaatta atgggaaatc taccggaact acgcgtcagc      4740
     ccagcaagac catttaaaaa tgctggggtc gattactgtg gtccattctg gattcatcat      4800
     aaagttcgag gaaggcgccc agacaaggct tacatcgcga tattctgctg ttttgcgact      4860
     aaggccatcc atatggaaac agtaagtgat ttaactactg acaaattcat tgcggcctta      4920
     aagcgattta tgggacgccg tggaaattgc caaacactac actgcgacaa tgctacaaac      4980
     tttgtgggcg ccaacaacaa attgaaagag ctagaagacg caatctacag cgacaaggca      5040
     aaagacagta tattagctga atgccacaaa acaaatgtaa aattccactt tattcctcct      5100
     cgagcaccac actttggcgg actctgggaa gcagcagtta agtcagcaaa acacttactg      5160
     ttgaaaaatg tatcgaccgc ttcattaacg tatgatgaac ttgaaaccgt tgtcattgag      5220
     atagaggcaa tacttaactc tcgcccaata actcctatgt caaccgatcc aaatgatctt      5280
     gctgcactaa cacctggaca ctttctgatt ggagaaccgc taacagcaca agcccatgac      5340
     gcagaaaggg aagacggaag gtcgcttgga caaagattag agttaattca acatttgaag      5400
     catacgttct ggactcgatg gtcacaggaa tacctccacg aacttcagca acgtacaaaa      5460
     tggacgagat caacggcaaa cgtatcagaa ggaatgttgg tactcatcaa agaggacaac      5520
     gtaccatgcc gacaatggcc tatgggaaga attcaaagag tatacaccgg ccccgacaac      5580
     catatacgag tggtcgatgt gaagacagct catggcacct tcaaacggcc catacacaaa      5640
     ttagcgccac tactagccat cgatgagcca caacacaaac atccactcga agacatatca      5700
     caamatgatc cctcggctaa ccaaaaggca aaacggctca gaacaccctg gacgccctct      5760
     cttacaacaa tgctgcttac catcatattg tttctaccac tcatattgac gcaatctatc      5820
     aacattacat attttgaatc taagcctggt atctactacg aacgaatcgg atcagctcga      5880
     ctggcagttg cagattggac catcattgct tattacgatc tggaaccata ttggaatgaa      5940
     atgaaaacmt tctctaaagg gaccaacagc gtaaagaaat tatgtgccga cctaagtatc      6000
     acagttccat gccagagcgt gtatcagcat ttcaagcatg tggagaacga attattagct      6060
     gaaaatgagc ttctacaaca agcaagacct aaaagagcgc cactggatat aattggaaac      6120
     atagcgagca gtttattcgg ggttttggat tcaacatatg caaaggaaat gtccgaaacg      6180
     attttgaagg tgaaacaaaa cgaagactat ttggtatcag tcttaaaaaa tcaaacctcc      6240
     tttgtggatt ccacattcaa cgtattaaaa cgtgacgaag ccacaatkga aagacgtcta      6300
     aataacatgg aagaccaact taacgccatg attacagaga aggcccaaca taatctgttt      6360
     cattggtata tatctctgac aacgcaacta acattaacgg cagcaaacct tcaacgaatg      6420
     caaacagaaa ttataaaagt actgacggat gttcgacaca acacaattag tccattgtta      6480
     ctatcgccaa gccaactgcg agatcaatta gaacaaatga aggatcattt aaaaatagga      6540
     caacaagtac ctagtacgaa tggaaatgta ctccagttat ataaaatgat gcaagccgaa      6600
     ggagccattg taaacaggca cgctgtgttc aaaataacat tgccacttat atccacacag      6660
     atactggaat tgtacaactt gatacctatt ccagtggtat cctcccgagg aatcacaaaa      6720
     atatcaataa gcgtaccact aatcgccgtt aatgatcatc gtgatgaatt tctgagcctt      6780
     acacatgaag aattcagaca ttgccatcct cttcaagcaa gtgagcacat atgttatcac      6840
     aaacaatcat tgttcaggat ggaacattgc tgtgaattcc tcatgttcaa caacaaaacg      6900
     tcagataatt gcaaaacttc aacaacaaac cactcgctca gttgggccaa tatgtttttt      6960
     aaaaatcaat ggatatttgc gacacggacc ccaatggatc tctccgctgt ttgtcctgat      7020
     ggcacctcaa gcattggact acgagatgct ggactcctca tcatgaagtc aggatgtaac      7080
     atccgcaacg cagatatgat cataacgggt catagcacat caaccagcac catgtattca      7140
     tcttacatgc gatttggcaa tttaaccaca caaccacctc atcaaaatcc atcgctaaat      7200
     aagtcaagag agctactcga ggcaaataac cttaaaaata tgcacttgat accagcacct      7260
     gaaatccaac ttccacaatg gatctcaccg ataaatcatt ccgtcatcat gtcgtatgtt      7320
     gcactagcag cgtcattgat cttgcttgca ctatatttca gcagaaggat taatcaagca      7380
     ggaccaacaa caccccggac acaagacggg atatcggccc cagcaattgg acaagacgcc      7440
     ttccggatcg acatatctga tagttaaacc atcgttcaac ggccgggagt a               7491
//
ID   BEL-3_DMoj-LTR repbase;    DNA;    INV; 499 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DMoj_;
KW   BEL-3_DMoj-LTR; BEL-3_DMoj-I.
XX
NM   BEL-3_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-499
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1258-1258 (2012).
XX
RN   [3]
RP   1-499
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
SQ   Sequence 499 BP; 173 A; 98 C; 73 G; 155 T; 0 other;
     tgtctgagtt tgtgttcacc caacaatcta caatcaacaa tcgtcataac tcatcctaag        60
     caaattaaga tattaggtaa aatagttatc tgcaatacca gacaactagt aaataaccca       120
     tcactatcgc aaggtataaa tgttgggcta tccgttataa gatagccttt ttcagaccgt       180
     aataaaacct tttatatgtt tatttaggtt tattgaataa gtaaaaatcc ataatcataa       240
     tcttgtattg atacctacca cctaaaaaat agtatataag gccgttacgt tcatacaata       300
     aagtagtaag aaaatagcac ttgaaaatag agcaacgagt ctcgtctttc actatttgat       360
     actcatctcc gttgtccaac tggttcaagt acttgttgcg acgcccgtag tcactggttc       420
     tgtactagag gcttacaatt aaacacaaat acaactacct agtcttggtt ttgtaccaag       480
     gtctaataga tactcaaca                                                    499
//
ID   BEL-3_DPer-I repbase;    DNA;    INV; 5645 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DPer_;
KW   BEL-3_DPer-LTR; BEL-3_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5645
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1471-1471 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4658-5266] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           383..5644
FT                 /product="BEL-3_DPer-I_1p"
FT                 /translation="MDNDPNTGAGGNIVVADSRLSLYKRKSQSLYDRLHRL
FT                 GESFAGNKIDKLTAAEVEVRLDMLAEIREEFNKAHNELEALDQNEIGSELR
FT                 EIFDTLFISLKAELLAAVEVSQSHAAAHSTTLPSHSGHSTIIMAHKQRLPE
FT                 LKVPKFSGGYVEFSDFMAMFKSVIEADADLSDIEKFQHLRSCLADAALDSV
FT                 RSLELSGANYRAALDILNKRFNNKRLVFQAHIKKILGLKRVDSPSAKRLRE
FT                 FSDAVNLHMRALQTLGTAEEISGFMVINMLLQKLDSKTQTKWEEHTSSDAI
FT                 PTAEEFFEFLQQRCQKMERLEYATATHASSDQVGKNHSYTQVKKTFVASNS
FT                 SADPSVCVFCHSAGHGIYSCKIFGNLSPLLRHKEVKKLSLCFNCLKPGHRT
FT                 RACNSGKCRVCGGRHHSLLHFDSIQPTTQGCPGITPPDLAVQPDTLSVAQN
FT                 SASSSSLPSSTSLAAQGLRSDVVLLATAVVLVKNRSGVLVPCRAILDSGSQ
FT                 LHLVTSRFAQQLQLRRTQSSALVSGLGDTSVSTEGSTISICMHSRTSAYTT
FT                 TLTALIAPTITDSQPSMAVNVSDWRIPSNIQLADPAFFNPQRVDLLIGASV
FT                 FYDLLCVGQIKLTDGLPLLQKTRLGWIVSGGGQKVSSSALSATHNCPDSIA
FT                 EMEARLDKTLRMFWEVENCVEAGSNTKEEDDCEAHFVSRLSRLPSGEYAVR
FT                 LPLNNNTDRLGESYAQAYRRFISLERKLERNPTLKERYSAFMREYIDLHHM
FT                 HQVNPDSRSLCKYFLPHHCVLKEDSTTTKLRVVFDGSAATSTGYSLNDVMM
FT                 TGPVIQPALFNILIRFRTYPVALTGDICKMYRCVRVSPPDNLYQCILWRDS
FT                 IESEVQVYTLDTVTYGTRAASFLAVRAMHQLAIDEGESYPLGSAALRQEFY
FT                 VDDLISGGNSVAQVMDKMHQTSALLSRGNFRLRKWCSSHQEVLEGTPEDDI
FT                 EKFLKFNDGSDIAKTLGLAWDPASDQLLFALSALDTTSKPSKRSVLSTIAR
FT                 FYDPLGLINPVIVRCKIFLQQLWRENLDWDESLPSALHSTWMDLRNSLASI
FT                 SRISFPRLVLRSSVATEVHGFCDASLEAYGACVYVVSREAQSSSHVLCSKS
FT                 RVAPLKTISIPKLELSGAHLLAKIMQNVKDMGIFTGRFYCWSDSSTALSWI
FT                 RDEPAKFQVFVANRVASIQELTAAMEWRYVPTSLNPADILSRGSLPNHLIQ
FT                 SELWFHGPSFLLGSKDKWPVSPTNNIATSELRKRGLLITSPHADLTSGCKF
FT                 ANSFFRMQRTFAYMHKFIHRLRHPGLTVSDIRQGTHLLIRHIQLANLWMDI
FT                 KEIRRNGQVMKSSSISSLNPFIDHSGLLRVGGRLGNSSLGFDAQHPLILPK
FT                 GHSVTFALIRYYHERNLHAGPRALLSKIRLEYWPIGGVKAVSRVVSRCVRC
FT                 FRTRPRMVEHIMGDLPKERLEGSRAFEVTGVDYCGPFFYRSEIRTRPPIKC
FT                 YISVFICFTSKAIHMELVKDLTTASFLGALKRFTSTRGRPSQIWSDNATNF
FT                 VGAKNELLELKKLCLSEPHMKEVHESCLADSIDWRFIPPRSPHFGGLWEAA
FT                 VKTAKYHLYRSVGPSVLSFDELRTLICQITAIVNSRPLLSLSENPDDLDVL
FT                 TPAHLLLGGPHEQILEPDLTKLNYNRLDGWQRVTQLQQIFWSRWREEYLTL
FT                 LQERAKWRTPAQNICKNDLVLVKDENLPPMRWPLARVVDVVSGKDGVCRVA
FT                 DLKTSSGNIRRAVTRLCLLPLKESVERLAPNGGS"
XX
SQ   Sequence 5645 BP; 1381 A; 1383 C; 1367 G; 1514 T; 0 other;
     tttttgaaac acataggtgc caaaaaagct tggcatctca aacattggtg accccccgac        60
     gtgatataaa accattgctt aatcgcgttc cgttaaaaca cttattaatt atacaatatt       120
     ttgttgttgg gtagtttaac taccaacaaa tacatttggg tgcacattga aaaacagttt       180
     aaagtgcaaa ttcagtgaga gtgcggctgg aatatttata gacaaattcc ggtactttaa       240
     gcgtcgaatc tctcattctc tgcgcagctg cagccgcggt tcttgacttt tcgtgtcttg       300
     cattctcgct ctcgcgtcta tacatcgtcg cttaagcggt atttcatttt ccgttgttgt       360
     gtcgaattgc acaacggtta acatggacaa cgatccgaat acaggcgcgg gcggaaatat       420
     tgtggtggct gattccagac tgagtctgta taagcgtaaa agtcagtcat tatatgatcg       480
     attgcacagg cttggcgaat ccttcgcggg gaataaaatc gataagctga ccgccgcgga       540
     agtcgaggtg cgccttgata tgttggcaga aattcgagag gaatttaata aggcccataa       600
     tgaattggag gctctcgatc aaaacgagat tgggagtgag ctgcgcgaaa tcttcgatac       660
     tcttttcata tcgttgaaag ctgagttgct ggctgctgtt gaagtaagcc agtcacacgc       720
     cgctgcccat tctacgactc tgccaagcca ttccggacat agtaccatca tcatggctca       780
     caagcagcga cttcctgagc tgaaggtgcc taagttttct ggtggatacg tcgagttctc       840
     ggattttatg gcaatgttca aatcggtgat tgaagcggat gcggatctca gtgacatcga       900
     gaaattccag caccttcgct cttgcctcgc tgatgcggct ttggattcgg ttcgatcgtt       960
     ggagctctcc ggtgccaatt atcgcgcggc tctggatata cttaataaac gctttaataa      1020
     caaaagactt gttttccagg cacacatcaa gaagattctt gggctaaaga gggtagactc      1080
     gccttctgct aaaaggcttc gggagttttc ggatgcagtc aatttacaca tgcgagcgtt      1140
     gcagacattg ggaactgctg aggagatttc aggattcatg gtcatcaaca tgctgctgca      1200
     gaagttggat tcgaagacgc aaaccaaatg ggaggagcac acatcgtcgg atgctatacc      1260
     taccgcagag gaattcttcg aattcttgca gcaacgctgc cagaaaatgg agcgattgga      1320
     atatgctacg gcgacacacg ctagtagcga tcaggtggga aaaaaccatt cctatacgca      1380
     ggttaagaaa acgtttgtag cttccaactc ttccgccgac ccgtctgtat gcgtcttttg      1440
     ccactcagcg ggccatggaa tatactcgtg caagatattc ggaaatctct caccgttgct      1500
     gcgccacaaa gaagtgaaga agctttccct atgcttcaat tgcctaaaac cggggcaccg      1560
     gacccgcgca tgcaatagtg gaaaatgtcg agtatgcggc ggtaggcatc atagtttgtt      1620
     gcacttcgat agtatacagc ccacaacaca aggctgccca ggtattactc ctcccgatct      1680
     ggccgttcaa ccggacactc tttccgttgc tcaaaattct gctagcagct cgtctctacc      1740
     ttcgtctacc tctcttgctg cccaaggtct tcgctctgat gtcgtgcttc tggctacagc      1800
     cgtggttctc gtgaagaatc ggtctggcgt tttagttcct tgtcgtgcca tcttagattc      1860
     aggatcgcag ctgcatctcg tcacatccag gttcgcccag cagcttcagc ttaggagaac      1920
     tcaatcgtct gcacttgtgt ctgggctggg cgataccagc gtttctactg agggatccac      1980
     cataagcatt tgtatgcatt ctcgcacctc tgcttacaca actacgctta ctgctctcat      2040
     cgcccccacg attaccgatt ctcaaccaag tatggcagta aatgtatccg attggcgtat      2100
     tccatctaac attcagctcg ctgatcctgc atttttcaat cctcaacggg ttgatcttct      2160
     cattggtgcg agcgtttttt atgatctcct ctgcgtaggg caaatcaaac tcaccgatgg      2220
     actgcctctt ctgcagaaga cccggcttgg gtggatcgta tctggcggtg gacagaaggt      2280
     atcaagctcg gcgctttcgg ccacgcacaa ttgtccagat tcgatagctg agatggaagc      2340
     aaggttggat aaaactcttc gtatgttttg ggaagtcgag aattgtgtgg aggctgggtc      2400
     gaataccaaa gaagaagacg attgtgaagc acatttcgta agccgccttt cacggttgcc      2460
     atccggggag tatgcagttc gtctgccgct aaataacaat actgatcgtt taggagaatc      2520
     ttatgctcag gcttatcgac ggttcatcag tctggagcga aaactggagc gtaatcctac      2580
     actcaaggag cggtattccg cctttatgag ggagtacatt gatttgcatc atatgcacca      2640
     agtcaaccct gattcccgta gcctctgcaa atatttcttg cctcatcact gtgtcctaaa      2700
     ggaggacagt acgacgacaa aactccgtgt cgttttcgat ggatccgcag ctacatcaac      2760
     tggatattct ctaaatgatg tgatgatgac aggccccgtt attcagcctg cattgtttaa      2820
     catattgatt cgctttcgaa catatccagt cgctctcact ggggacattt gtaaaatgta      2880
     ccgctgcgta cgagtgtctc cacccgacaa tttgtatcag tgcatcctat ggcgagattc      2940
     catcgagtcc gaggttcaag tctacacatt agacaccgtc acatacggga cgagggctgc      3000
     atcattttta gcggtccgcg caatgcacca gctggccatc gacgagggtg agtcctaccc      3060
     tcttggctca gctgctctgc ggcaggagtt ttacgtggat gaccttattt cgggcggtaa      3120
     ttcggtcgca caggtcatgg acaagatgca ccaaacatca gctttactgt cccgtggtaa      3180
     ctttagactt aggaaatggt gctccagtca ccaggaagta cttgagggaa cccctgaaga      3240
     tgacatagag aagttcctaa agtttaatga tggaagcgac atagccaaaa ctctcggctt      3300
     agcgtgggac cccgcttcgg atcagctgct ttttgccttg tccgcactgg acacaacctc      3360
     aaagccatca aagcggtcgg ttttatctac gattgcgcgg ttctacgacc ctcttggatt      3420
     gataaatcca gtcatcgtca ggtgcaaaat cttccttcag cagctttgga gagaaaattt      3480
     ggattgggat gaaagcctac cctcagcgtt gcattcaact tggatggact tgagaaatag      3540
     tttggcaagc atttctcgga tctcatttcc tcgcttggtt cttcgttcta gtgtggctac      3600
     agaagttcac ggattctgtg atgccagctt agaagcatat ggcgcttgcg tgtacgtcgt      3660
     gtccagggaa gcccagtctt cgagccacgt tttgtgctca aagtcgcgag tggcgccgct      3720
     aaagactata tcgattccta agctggaatt aagtggagcc catttgcttg cgaaaatcat      3780
     gcagaatgta aaggacatgg gaatctttac aggtcggttc tattgctggt cggattcgtc      3840
     aacagcatta tcttggatta gggacgagcc agctaaattt caagttttcg tggcaaatcg      3900
     agtggcatca attcaggagt tgacggcagc catggaatgg cgctatgttc ccacatcttt      3960
     aaatcctgct gatattctct cgagaggctc gcttcccaac catcttatcc agtcagagct      4020
     atggtttcac ggcccatcct ttttgctagg ctccaaggat aagtggcctg tatctcctac      4080
     taacaacata gcaacttcgg agcttcgcaa gagaggattg ctaatcacgt ctccacatgc      4140
     cgatctcacg tccggatgca aatttgcgaa ttcattcttt cgcatgcagc gcacattcgc      4200
     ctacatgcat aaatttatac atcgtcttag gcatccagga ctcaccgttt ctgatattcg      4260
     gcaaggaacg catcttctaa ttcgacacat tcagctggca aatttgtgga tggacataaa      4320
     ggagattcgg cgcaatggtc aagtcatgaa atccagttct attagttcgc tcaacccgtt      4380
     catcgatcat tctggactac ttagagttgg aggtcgtctt ggcaactcgt cgctaggatt      4440
     tgacgctcag cacccgctca ttctgccaaa gggacattcc gttacctttg cgctgataag      4500
     atattatcat gaaagaaacc tccatgccgg acctcgcgcc ttgctatcca aaattcggct      4560
     ggaatattgg cccattggag gtgttaaggc agtgtcaagg gtcgtcagca gatgtgtgag      4620
     atgcttcagg actaggccgc gcatggtcga acacatcatg ggagacctac ctaaggaacg      4680
     tttggaagga tctcgagctt ttgaagtcac tggagtagat tactgtggac cttttttcta      4740
     ccgatcagaa atccgcacaa ggcctccgat caagtgctac attagcgtat tcatctgctt      4800
     cacttccaag gctatacaca tggagctcgt aaaggatttg accaccgcat cgtttctagg      4860
     cgcactaaag cgttttactt ccactcgagg aaggccaagt caaatttggt cggacaatgc      4920
     gacaaacttc gttggggcca agaacgagct tctggagcta aagaagcttt gtctgagcga      4980
     accgcatatg aaggaggtcc acgaatcctg cttggctgac tcgatcgact ggcgtttcat      5040
     cccacctcgc tctccgcatt ttggcgggtt gtgggaagcg gccgtgaaga ccgcaaaata      5100
     tcacctgtac cgctcagttg ggccatccgt gcttagcttc gacgagctgc gcactctgat      5160
     ctgtcagatc actgcaattg ttaactctcg ccctttgctc tcgctttcag aaaatcctga      5220
     tgatttagac gttttgactc ctgctcatct gcttttaggc ggcccccatg agcaaatcct      5280
     cgagcctgac ctaacgaagc tgaactacaa tcgtctggat ggctggcagc gggtcaccca      5340
     actacaacaa atattttgga gccgttggcg cgaagagtat ctcactcttt tgcaagagcg      5400
     cgcgaagtgg cgtacccccg cgcaaaacat ctgcaagaac gacctcgttc tggtgaagga      5460
     cgaaaatctt cctccaatgc gttggccact ggctagagtg gtcgatgtcg tttcgggcaa      5520
     ggacggagtg tgtcgcgtcg ctgacctgaa gacatcctca ggaaacatca ggagggccgt      5580
     cactcggcta tgtttgctgc cccttaagga atctgttgag agactagctc ccaacggggg      5640
     gagta                                                                  5645
//
ID   BEL-3_DPer-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DPer_;
KW   BEL-3_DPer-I; BEL-3_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-351
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1472-1472 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 351 BP; 88 A; 92 C; 69 G; 102 T; 0 other;
     tgttcgggcc agccgctgaa gaataaccgt aactttaaca ttattattgt atgagcagag        60
     agagccgcct atgttgtaaa acgttgactt tctgcagagc tgctgcgctc tcccgctaaa       120
     ggggctctct gccgccgcca cttcggcaat tactttgatc tgctgccgcc acttcggcaa       180
     tcactttgat ctaacgccgt cgtctatagt ttagttctat gctaacccct ctgcgcattg       240
     gttgcatatc gatctcgcat aaagtttatc tggcaatagc aagcaatcgg cttccgctaa       300
     gccaccaaga ttaaatacga attataaagt ttaacccaaa atctcttttc a                351
//
ID   BEL-3_DRh-I repbase;    DNA;    INV; 5282 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.08, Created)
DT   14-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DRh_;
KW   BEL-3_DRh-LTR; BEL-3_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5282
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1551-1551 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4353-4901] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           227..2350
FT                 /product="BEL-3_DRh-I_2p"
FT                 /translation="MSKEVCRICKKKAIGTEESWVQCDSCDSWYHFHCAGV
FT                 GYDVEDTDWSCDLCLAGGSSENPPGRMMRSPPQNHFDISNSLSVNQNKPQL
FT                 DALIEMDKPSGGQIIPDDNSNVNKSKLMLDMLEEKKASEQRFIEEKYKILL
FT                 QMNMQDGSTDGLFQATPASPSSSQIAARQAIPKELPSFSGDPEEWPMFIST
FT                 FEHSTSAAGFSNVENMLRLQKCLKGRAREMVKDKLLLPSLVPEVMSTLKMF
FT                 FGRPEHILERMIDKVRKLPPPKEKLESIIEYALAVRNICATIEACSLQAHL
FT                 NNPMLVKELVDKLPSNHKLNWAMHPRDESVPPIKAFSDWLYKIAQAASTVV
FT                 TPFSHRTSSVNTHNSCAASSSQGSTVQQQPNRKCIACESTNHWVTQCEQFK
FT                 TSAVEQRWQVAKAGKACFRCLKVHRNNCRPKECGVNGCTRKHHPLLHSESV
FT                 PNTANEAGNQRHVSTHHGDVEGNQFFRIVPVTLHYADKKIEIFAFLDEGSS
FT                 VTLIDTSIFDKLDIKGTPSPICLQWTGETTRFENTSVQASIQISGVSSETR
FT                 YWLNNVHTVKNIALPKQTVDMDELRSKYSYLKDLPLETYSAQPMLLIGTNN
FT                 WKIAVPRRIREGKWNDPIASKCMLGWTIQGSANSNRHVSMHHCDCNWQKLH
FT                 DEVKEHSTSSQFRKKTPFKRGQTSSRNPSRLAKTNVENTKLGFFGGMIFKN
FT                 FPRVALPL"
FT   CDS           2368..3714
FT                 /product="BEL-3_DRh-I_1p"
FT                 /translation="MRTRILRKPDLFTKIDDQIKNLLTKGYAKQLSDEEAE
FT                 KEETRTWYLPIFIALNPNKPGKIRLVWDAAAKTNGICLNDLLLSGPDCLNP
FT                 LIDVLLAFRVGKVAVSGDIAEMFHRINIRHEDMHSQRFLWYDASQNKINTY
FT                 VMRAMTFGISCAPFIAHYVRDKNALVHQQQFPLALDAIQRAHYVDDFIDSM
FT                 SDEQKAIEISSQVREVHSRGGFEIRNWASNSSTVLSYLKNDGDAKKQEAVQ
FT                 FGATEKVLGMYWDPHKDVFKFICRFSRLKRDVLTDPAVPTKREVLQVLMSI
FT                 FDPLGLLSCHTIGLKILLQKIWRANISWDQELPESLSEDWNQWKLLLPQVA
FT                 TINIPRCYSPRISAETRIDLHTFVDASEHAYSAACYLRVSQKDEVDVLLVA
FT                 AKSKVAPLKPLSIPRMELQAAVMGSRLANKIVNVRNLRVDDLTFWSDHEPF
FT                 YNGW"
FT   CDS           4215..5249
FT                 /product="BEL-3_DRh-I_3p"
FT                 /translation="MDDYGILRTKSRVNAVGYTMDAIICKNRSAMPQPPQM
FT                 AAVPKARLASFEKPFTCTGVDYFGPILVNVGRRKEKRWVALFTCLTLRAVH
FT                 FEIAHSLDTSSCVMCFTMALRGTPREIYSDNGTNFKATEKTLREELIKIDF
FT                 DKIAIKFDGIKWLFNPPGAPHMGGAWERLVRTTKTVLKNICPNYSFNDESL
FT                 RCALMEAQFIINSRPLTFVSLDSEDDSALTPNHLLMGSPNGYKPIKEEKIN
FT                 LRRHWSEVKLFGDRFWQRWVKEFTPVLTRRTKWFEKCPPISVGSVVIIIDE
FT                 NLPRNLWLKGRVINTFPAKDGQVRRATIKTQHGVLDRPATKIAVLDVGLED
FT                 GN"
XX
SQ   Sequence 5282 BP; 1629 A; 1281 C; 1210 G; 1162 T; 0 other;
     ttcttaaaaa ctttgtgcac aaccggttgc cgttataact gtacaattac gaagcgacgc        60
     atttccaatt agccataata ttgtgaaatc gcgatcgcat ccctttcttg aacgtaaggt       120
     gagaaaaacg taatacgtaa acggagccaa aaaaccacag aaattacgca cacaaataca       180
     attccgccac acgccaagtt cacataaccc taaaaagtta attgagatga gcaaagaagt       240
     gtgtagaata tgcaagaaaa aagcgatagg aactgaggaa agctgggttc aatgcgacag       300
     ttgtgatagt tggtaccact ttcactgcgc aggtgtcggc tacgacgtcg aggatacgga       360
     ttggagttgt gacctgtgtc ttgctggagg tagctccgaa aacccacctg gaaggatgat       420
     gcgatcaccg cctcaaaatc atttcgacat ctccaactca ttatccgtaa accaaaataa       480
     gccacagctg gacgcgctca tcgaaatgga taaacccagc ggcggacaga ttatccccga       540
     cgataattct aacgtcaaca aaagcaagct aatgctcgac atgttggaag aaaagaaagc       600
     ttccgaacag agatttattg aggagaagta taaaatttta ctacaaatga atatgcaaga       660
     cggatcgaca gacgggctat ttcaggcgac tcccgcatca ccgtccagtt cccaaatcgc       720
     cgcaagacaa gctataccca aggagcttcc ttccttcagc ggggatcctg aggagtggcc       780
     aatgtttatc agtacatttg agcacagcac ttccgcagca ggattctcca atgttgaaaa       840
     catgctccgt ctacaaaagt gcctaaaagg tagggctcgc gaaatggtga aggataagct       900
     tctacttcct agcctagttc cggaagtaat gagcacgctg aaaatgttct tcggcagacc       960
     cgagcacatc ctggagagga tgatcgacaa ggtgaggaag ctaccgccac ccaaagaaaa      1020
     attggaatcc ataatagagt acgcgctcgc agtacgcaac atttgcgcca cgatcgaagc      1080
     ttgcagccta caagcgcact taaacaaccc aatgttagtg aaggagcttg tagacaaact      1140
     tccaagtaac cacaaactaa actgggcgat gcacccccgc gacgaatcgg tccctcccat      1200
     taaagctttc agcgactggc tctacaaaat agcgcaggcg gcgtcgactg tcgtgacacc      1260
     attttctcac aggactagtt ctgtgaatac ccataatagc tgcgcagcca gttcgagcca      1320
     gggatctaca gtccagcaac agcctaatcg aaagtgcatt gcatgcgagt ccacaaatca      1380
     ttgggtaaca caatgcgaac aatttaaaac cagcgcggta gaacagagat ggcaagtcgc      1440
     taaagccgga aaggcctgct ttcgatgctt aaaggttcat cgaaacaatt gtcgaccaaa      1500
     ggagtgcgga gtaaatggtt gtacaagaaa acatcaccct ctactccact cggaaagtgt      1560
     tcccaataca gccaacgaag cgggaaatca aagacatgta agcacacacc atggcgacgt      1620
     agaaggaaac cagttcttcc gaatcgttcc cgtaactcta cattacgctg acaaaaaaat      1680
     cgaaattttc gcttttctgg atgaaggatc atctgttacc ctaatagaca catcaatttt      1740
     tgacaagctc gatataaaag gtacaccgtc accgatttgt ttacagtgga ctggagaaac      1800
     aacccggttc gaaaatacat ccgtgcaagc atcaatccaa atctcaggcg ttagctcaga      1860
     aacacgttac tggctcaaca acgttcatac tgtcaaaaac attgcactgc caaagcaaac      1920
     cgttgatatg gatgagttgc gcagtaagta cagctatcta aaggacctgc cattagagac      1980
     ctactccgcg cagccaatgt tattaattgg aacaaacaat tggaaaatag ccgttcctcg      2040
     caggatccgc gaaggcaagt ggaacgaccc aatagcgtca aagtgcatgt tagggtggac      2100
     catccaggga tcggcaaact caaaccgtca cgtatctatg caccactgcg attgcaactg      2160
     gcaaaagctt cacgatgaag taaaggagca ttcaacctcg agtcaatttc gcaaaaaaac      2220
     tcctttcaag cgaggacaaa cgagcagtcg aaatcctagc agacttgcca aaacaaatgt      2280
     ggaaaatacg aagttgggct tctttggcgg aatgatcttc aaaaacttcc cgagagtcgc      2340
     attaccgctc taaagcgcct acaatgcatg agaaccagaa ttctgaggaa accggacctg      2400
     tttacgaaaa tcgacgacca aatcaaaaat cttcttacca aaggatacgc caagcaactg      2460
     tctgacgagg aggcggagaa agaggaaact cgcacctggt acttacccat atttatagcc      2520
     ctaaatccga ataagccagg aaaaataagg ctggtctggg atgcggcagc aaaaacaaat      2580
     gggatatgcc tcaacgacct tctgttaagc ggaccggact gcttaaaccc acttatcgac      2640
     gttcttctag ccttcagagt cggaaaagtc gccgtaagtg gcgacatcgc cgaaatgttc      2700
     cacaggatca acattcgcca tgaagacatg cattcccagc gctttctttg gtatgatgcc      2760
     agccaaaata agataaacac ttacgtcatg cgtgcaatga cttttggtat tagttgcgca      2820
     ccattcatag cccactacgt gcgcgacaaa aatgccttag tccaccagca gcaattcccg      2880
     ttagccttgg atgcgattca gcgtgcgcac tatgtcgacg acttcatcga cagtatgagt      2940
     gatgaacaga aagccatcga aatatccagc caagtaagag aggtccactc cagaggcgga      3000
     ttcgaaattc gaaactgggc gtcaaattcc agtacagttc tctcgtatct taagaacgat      3060
     ggagacgcca aaaaacagga ggcagtgcag ttcggcgcta cagaaaaggt tttgggtatg      3120
     tactgggacc cacataaaga cgtatttaag tttatttgca gattctcaag acttaagcga      3180
     gacgtcctca ccgatcctgc agtcccaacg aaaagagaag tccttcaggt tctcatgtcg      3240
     atcttcgacc ctttgggcct gctgtcatgt catacgatcg gattaaaaat ccttctgcag      3300
     aaaatctggc gtgcaaatat cagctgggac caagagctgc cagaatcatt gtcggaggac      3360
     tggaatcaat ggaagctgct actgcctcaa gtggcaacaa ttaatattcc gagatgctac      3420
     tccccaagga tatctgcaga aacccgaatc gacctgcaca cgttcgtgga cgctagcgag      3480
     catgcttatt ccgctgcttg ctacctccga gtatcacaaa aagacgaggt ggacgtactg      3540
     ctagtggccg cgaaaagcaa agtggcgcca ctaaagccat tatctattcc gcgcatggag      3600
     ctccaagccg ccgtgatggg ctcacgctta gcaaacaaaa tcgtcaacgt acgtaatctt      3660
     cgagtcgacg atcttacgtt ctggtcggat cacgaaccgt tctacaatgg ctggtgatgg      3720
     atcctcgcaa ctttcaacaa tttgtgatgc acagaatcgg cgaagtcctg gagaccactc      3780
     gagtggatca atggcgatgg atcccatcaa agctcaacgt cgcagacggg gcaacgaagg      3840
     tcatcaaaaa tccttgtgtg gacacatggc tttacggacc cgagtttctg aaaagggaac      3900
     ccagtaactg gccaacagtt ccgtcacggg caacggagat cgatacgacc gaactacgca      3960
     gacatgtctt tataacccgt gcgaataaag tcttactcga cgtggaatat ttttcggatt      4020
     ggcggcgcct gtacagagcc gtcgcaaaca tgtccctata tatccggcga ctacaagcta      4080
     aatgccaaag gacggacatg ccgacagcag tgaccgaatt tcacgtcaaa gaagcgcaga      4140
     cccttctata caaggaagca cagaggctgg agttcgcgaa gaaatccgct cactaagttg      4200
     taaaaagacg atatatggac gactacggaa tccttcgcac taaaagtcga gtgaatgcag      4260
     tcggatatac tatggacgcg ataatatgta aaaatcgtag cgcaatgcca cagcctccac      4320
     aaatggccgc ggttccaaaa gctaggttgg caagttttga aaaaccattc acgtgcaccg      4380
     gcgtcgatta ttttgggcct atcctagtca acgttggaag acgcaaagag aagagatggg      4440
     ttgcgctgtt tacctgctta accctgcgtg cagtccactt tgagatcgct cacagcctcg      4500
     atacaagctc ctgtgtgatg tgtttcacca tggcacttcg tgggacacca agagaaattt      4560
     attccgataa tggcactaat tttaaggcca cggaaaagac attgcgagag gagctgatca      4620
     agatcgactt tgataaaatc gcaatcaagt ttgatggcat taaatggcta tttaaccctc      4680
     caggagcccc ccatatgggc ggtgcttggg aaagattagt ccgcactacc aaaacagtcc      4740
     taaaaaacat ctgcccgaat tactcattca acgacgaaag cctgaggtgt gctctaatgg      4800
     aagcacagtt catcattaac tcacgtccct taactttcgt cagcctggac tccgaggacg      4860
     actctgcgtt gactccgaac cacctgctaa tgggttcacc gaatggttac aaaccgatca      4920
     aggaagagaa gattaaccta agacgtcatt ggagcgaggt aaaactcttt ggagatcgct      4980
     tttggcaacg ctgggtgaag gagtttacac cagtgctcac tagacgcact aaatggtttg      5040
     aaaagtgtcc cccaatatca gttggaagcg tggtcattat catcgatgaa aacttgccta      5100
     gaaatctatg gcttaaagga cgcgtgatca acacttttcc tgccaaggac ggacaagttc      5160
     gtcgagccac tattaaaacg cagcatggag ttctcgatcg accagctacg aagattgcgg      5220
     ttctagatgt cggcttagaa gatggtaact gaccacccta ggatcaatta caggaggggg      5280
     aa                                                                     5282
//
ID   BEL-3_DRh-LTR repbase;    DNA;    INV; 326 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.08, Created)
DT   14-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DRh_;
KW   BEL-3_DRh-I; BEL-3_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-326
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1552-1552 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 326 BP; 109 A; 54 C; 59 G; 103 T; 1 other;
     tgttgccgcc ataatttaaa tttaattttg atttctttwt gttatatata agcactcgat        60
     ataaacatcg agatatcgct gtaaggaata tcgatctcat tttacgttgt taagaaccat       120
     ctcaaaaaat gacagaagcg aaataagaga aggagaaaag acaaagtttt taagcgtgct       180
     ccgcaacgca aactgtaata cacatcgatt cggaagctga aatttaaata aagttaattt       240
     tcaatacata gtttactgct ctccgtctgt gctttcgagt gagtggtgtg ggctgctgta       300
     aaaacaattt agtttcgctc tcaaca                                            326
//
ID   BEL-3_DSer-I repbase;    DNA;    INV; 2648 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-3_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2648
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2000-2000 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..2645
FT                 /product="BEL-3_DSer-I_1p"
FT                 /note="DUF1759, and retropepsin."
FT                 /translation="MANTENSVQHQNEPPSDVDFYRAKAQSLLRQLSSMNY
FT                 YINPETVDQFDEADLLARLEWINSLNLAFDSAQTSLEKLDFSEIASDHRIE
FT                 FSTAFMDVKAKINRGLAALRKSQLPAATAANSTSIDNFNHPDLSFRSRKPR
FT                 LPILEIARFHGSYSDWPDFIATFSTVIGNDEELSDIEKLQYLRSSLGGVAL
FT                 ETIRSLEPSNANYTKALDLLKNRFDNKVLHFQAHVQAIFGLKGVEKGSAKG
FT                 LRELSDCMNSHLRAIRTLATTQQILDGLLIHIVARKLDQRTREKWEEDLSI
FT                 NNLATWDSMESFLQRRCRIMENSDQALVTQTPSRQVGKALHGYSFIASVGS
FT                 SNLPLCTFCDARDHYLPKCSRFLNLSPNLRFREAKKLHLCLNCLRKGHSLQ
FT                 QCKSTHCRYCHMKHHSLLHFNQDPSVPSTTSSLSSDPFPNSQPSSSHSSSH
FT                 SSSHSSSHSSSQPNHRSSNPPPSPTDILPVDYVLLPTAIIYLRNKAGEFMP
FT                 CRAILDSASQLNFITSRLANQLNLNCRKSHTLVAGIGESSLNSDTAVDIVA
FT                 QSQDASYRASFSAVVTDSIADYQPHFNINATSWKIPQNISLADPHFNRSER
FT                 IDLIIGAGLFFKIMATGQIYLGSALPTLQNTKLGWIVSGGLPSASTPQSVS
FT                 AAVVKDPRNHFDGGTLAAVGRPAAFLTPFRKSCWPIGGHKIANAXXAVLPH
FT                 DADEVGTVPLPTGG"
XX
SQ   Sequence 2648 BP; 706 A; 622 C; 593 G; 724 T; 3 other;
     ttttggtgac cccgacgtga tcttttggtt cggagcctgc aacccggtgt tcgttgttta        60
     atatcgttta aacaaatcgc tttgcttcgc tgtcgcttac tggcattcgg tcataagcac       120
     acaagcaaac tcacatacac acataccttg tacataacaa gctgagtgca tatagccggc       180
     cgctgatttt cggtttaatc gcgctgttta acaaaagctg tgttgtgcca aatattgtat       240
     agaaaggtgg ctcgcgctta agcgtcgtta atagcgccta ttgaacatat atatacttat       300
     gcatatatag catagacgtg cgtgtgccaa aactccgctg tttcgaggca gacaattgca       360
     acaacaacat tgtcgaggtt ccgttgcatc tcggtgacgc tgattaacct caaatttgcg       420
     cggtgaaaac taaacgggtt cctatatacc gaagcggtca gacattttcc cttaattaaa       480
     tcttttcgcg tgagaaaata aagatggcta acacggaaaa ttcggttcag catcaaaatg       540
     agccgccaag tgacgtggac ttttaccgag ccaaggccca atcccttttg cggcaattga       600
     gctcgatgaa ttattacata aatccggaga ctgtagatca gtttgatgaa gctgatttac       660
     tggcgcgact ggagtggata aattcgttaa atttggcctt tgattccgca cagacttcgc       720
     tggaaaaatt ggacttttcg gagatagcaa gcgaccatcg gattgagttc tccacggcgt       780
     tcatggatgt gaaggcgaaa ataaatcgag gtttagcggc gcttcgcaaa tctcaattgc       840
     cggctgcaac cgctgcaaat tcaacttcca tagacaattt taatcatccg gatctttctt       900
     tccgatctag gaagcctcgg ttgccaattt tggagatagc tcggttccat ggatcctact       960
     ctgattggcc ggattttatt gcaacgttca gcacggtcat cggaaacgac gaagagctaa      1020
     gtgatattga aaaattacaa tatctaaggt caagtttagg cggtgtggct ctagagacca      1080
     tacgttcgct tgagccctcg aatgccaatt atacaaaggc tttggactta ctcaaaaatc      1140
     gatttgataa taaagttcta cattttcagg cacacgtaca ggcaatattt gggttaaaag      1200
     gtgtcgagaa gggatcagcc aagggtctac gggagttaag cgattgcatg aattcgcatc      1260
     tgcgagcaat ccgtaccctg gccactacgc aacaaatctt ggacggattg ctgattcaca      1320
     tcgtcgcacg gaagctcgat cagaggacgc gggaaaaatg ggaggaggat ttgtccatca      1380
     acaacctagc tacgtgggat tctatggagt cgttcttgca aaggaggtgt aggattatgg      1440
     aaaattcgga tcaagccttg gtaacgcaaa caccaagccg gcaggtggga aaagccctgc      1500
     atgggtatag cttcattgct tcagttggta gctcaaatct tcccctatgt acgttttgtg      1560
     atgcgaggga tcattatttg ccaaaatgct ctcgatttct aaatttgagc ccgaatctgc      1620
     gatttagaga agcaaagaag ttgcacctgt gcctcaactg tttgcgcaag gggcatagtt      1680
     tgcagcaatg caagtcaacg cactgcagat actgtcatat gaagcaccac tcattgttgc      1740
     attttaatca ggacccatct gtaccatcca ccacctcatc tctatcatcc gatccatttc      1800
     ccaactctca gccatcatca tcacattcat catcacattc atcatcgcat tcatcatcgc      1860
     attcatcatc ccaacctaat caccgttcat cgaaccctcc accaagcccc acagatattt      1920
     tgcctgttga ttacgtgttg cttccaaccg cgatcatata tttgagaaac aaggctggag      1980
     aatttatgcc ttgccgagca atcttagact cggcgtctca actaaacttc ataacgtctc      2040
     gtctagcgaa tcaacttaat ttgaattgtc gaaagtcgca taccctagtc gctgggattg      2100
     gggaatcctc tctgaattcc gatacggcag tcgacattgt agcgcaatcc caggatgcaa      2160
     gctatcgtgc ctcattctcc gcggttgtga ctgacagtat cgctgattat cagcctcatt      2220
     ttaacataaa tgccacatcg tggaaaattc cgcaaaatat ttcgcttgct gatcctcatt      2280
     ttaatcggtc agagcggatt gatcttataa ttggtgctgg actcttcttc aaaataatgg      2340
     ctacgggaca aatttatttg ggtagcgcgt tgccaaccct tcagaacacc aaacttggtt      2400
     ggatcgtgtc tggagggctg ccgagtgcgt caactcctca gtctgtctca gctgccgtcg      2460
     tcaaggatcc taggaatcat tttgatggtg gcacacttgc tgccgtagga aggccagctg      2520
     ccttcttgac cccatttcgg aaaagttgtt ggccaattgg aggccacaaa atcgcmaatg      2580
     cgtakcwagc cgttctgccc cacgatgccg atgaagttgg aacagtacct cttccaacgg      2640
     ggggagta                                                               2648
//
ID   BEL-3_DSer-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-302
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2009-2009 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 302 BP; 73 A; 66 C; 60 G; 103 T; 0 other;
     tgttcggagc agaccgctag cgcctaattg tgcgcgcatg ggtgtatggc tgcacctgct        60
     gcgctcttag cttttctctt tcgttatcta tttatctatc tcttcttctt ctgtcgcctt       120
     atctttatgc taagctacat tgtaagcgtt ttgatatata tgttaaaaac taagcattcg       180
     atcggtagtt gcagctccga ccagagaagt gaacaaaaat aaaatacagc atataatcga       240
     cctattcgtg cgttcgtagt tattgctcaa gggtggcaaa tttgttgtct tccccataaa       300
     ca                                                                      302
//
ID   BEL-3_DTa-I repbase;    DNA;    INV; 6076 BP.
XX
AC   AFFI01006297;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DTa_;
KW   BEL-3_DTa-LTR; BEL-3_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6076
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006297; Positions    3263    9338.
XX
CC   Positions [5118-5693] - Integrase core
CC   'TGGCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           842..2671
FT                 /product="BEL-3_DTa-I_1p"
FT                 /translation="MAPTKPKNNDTASETEEEMEDSCSSVQLTKLFSQVDR
FT                 VGEDITRMRKAFEENTISFNPLQIQCRLEILNSYIAKAMALQSEIDMIDPD
FT                 NRNRSTLEENCVITKALYMSAAGGTGENHKQQALVTGSSHSNLPKLKLPKF
FT                 SGKHSEYKQFIGIFEQLVDSDNSLSNIEKFNHLLSCLSDEALGTIKALQVS
FT                 DTNYKKALASLKRVYDNKCLIFFETLAQLFEIPSITKPSASALRLIIDTVS
FT                 AIFDSLLSLGDEKDIVNAVIIHIVLSKVDPYTKSKYEEQLNYDELPKWPDC
FT                 VKVLDRRYQHVSAEEASRVKGKGFSEMPSGSKKNTRNSYTCSRVNNTSDPK
FT                 CLYCSSNHFIGNCQGFSGMPVLDRFNFAKMKQLCINCLKEGHRVFKCTASK
FT                 CRVCSQAHHTLLHRYQNSSEPHQGRSWQDQQGQGTSTSQASSHSAQVIQDT
FT                 SEINQVILATAVVNVRDRFGQLHRARALLDSGSQINFMTESLAQLLRLSRT
FT                 NKCLSITSVGGSNSIARSEVTTTLYSRLNGHIFTSDFWVLGTITSNQPDNM
FT                 LPERQWKIPAGVDLADPEFYKPQRIDILLGADSFFELLCSGQTHQWRSIAS
FT                 KNTIGMGCFWTV"
FT   CDS           2724..5066
FT                 /product="BEL-3_DTa-I_2p"
FT                 /translation="MVLGGLVERLWELDTVPENKEVVKFSPEQIACEDHFV
FT                 KNVANSNCGRFIVRLPFKSDPLVLGSSFDVAKRRFLSLERRSLKDSSLREM
FT                 YTAFMKEYLELGHMIPTCNNIPPGPHYFIPHQCVLRPDSTSTKLRVVFDAS
FT                 AKTTSAQLLNDILMVGPTIQRELLLSLIRFRLNRYALTADISKMYRQVSLA
FT                 EEDRNYQLIVWRENPYDELQIFRLNTVTYGTSSAPFLAIRSLQELGFRNRD
FT                 KHEIGSYIICNDFYVDDMLTGADDIGTLNVMCNQVSEILNSGGFQLSKWFS
FT                 NHPQLEKGNNTEKSLNFNDTDSTKALGMRWMPHTDTFRFHLDESFKNLTPT
FT                 KRNILSVSARLFDPLGLLCPIGLTSKILLQSLWQLQLEWDESIPMSLHTSW
FT                 ERLKKNLLNLHTVTIPRYTFASGCSAVQVHGFADASSQAYGCCIYIRAIEN
FT                 GKANCRLLAAKSRVAPLKTKTIPRLELCAATLLAQFWSYVKQVLDKCEIES
FT                 VYFWTDSEITLHWIKSQPSSLAVFVSNRVATIQELSENISWRHVPSQFNPA
FT                 DIASRGCDVSELTESIWFEGPKFLYENESLWPENSHFSIPSELKNSELKKA
FT                 AQVCIAVEPSTPFEFITRISSFPKIIRILGYVYRFLNIAKSRERSVSLTAR
FT                 ELQLSFFKLMEIIQKNVFAVEYKKIKKGHVLQPSLQMMTPFIQKFSAAGRR
FT                 FSLIRVGGRLLHAPISENAKFPILLPSKNQIVDLYLRDLHLRNCHANAKTM
FT                 IGLLRQEIWLINARRECTRVVRKCIHCFRF"
XX
SQ   Sequence 6076 BP; 1822 A; 1271 C; 1295 G; 1688 T; 0 other;
     tggcgcccga gacagggaca tcgaaaagtt ttgttcgggt ttaaaatcat ttcaaagacc        60
     gcttagctgc ttgcgaattt cggggccaag acttggcatt ttttggactc gtaaatttcg       120
     gcgccaacaa ttggcatttt tcggacattt cacttggaat ttgttggccc cttatttcgg       180
     acgtttgttt actggagtta acatctatgg accgcagcgc caacttgagg gaagtggatt       240
     catctgatga ccaggtaacc gtgtcaaatc aatagttgat cgctgcaaaa ataatagttg       300
     caactattgc cttggcattg gtcaaatatc ataataattg gaagcaaaac cattttcgtg       360
     cccatatatt cccaagtacc gcaaataaaa accgccacaa aagaaaaaca aaattgtgaa       420
     ataacaaata caaattataa aaaaaaaaaa aattaaattc aagtgaacaa ccacatagtt       480
     ttggtgccgc cctcgcgaaa gagattaaca agcataacag cgtcagtgcc ggtgccggtg       540
     gaaaataaca gttagttctc gctgtgtctg cctaagtttt gtttcgcttt tcgtttcgat       600
     tttgtaatag ttgtgttaac ttcgatttta ggcagaccgc taagcgccag tgcaacgaac       660
     tgccactgct tgtgttttct ctttcgggtg ttggtgcact ctcttaatta cgttctcgtt       720
     tctcattttt tgtgttacgc cgagcgctct acacttaaac aaatttattc aagccgccta       780
     gatacagaaa tacaaaaaac tattggctat attgtaataa atttattaat atttaattaa       840
     aatggcacct acaaaaccca aaaacaatga taccgcatcg gagacagaag aggagatgga       900
     agatagctgc tcctcggtgc aattaacgaa attattttcg caggtagata gggttggtga       960
     agatattaca agaatgagga aagctttcga ggagaataca atttcgttta atccgcttca      1020
     aattcaatgt cgactggaaa ttttaaattc atatattgca aaagcaatgg cattgcagtc      1080
     ggaaatagat atgatagatc cagataaccg gaataggtcg acattagaag aaaattgcgt      1140
     cattaccaag gcattatata tgtcagctgc tggtggtaca ggtgaaaatc ataaacagca      1200
     ggctttagtc acgggcagtt cacattcaaa tctgccaaaa ctcaagttac caaaatttag      1260
     cggcaaacat tcagagtata agcaatttat tggaattttt gagcaactag ttgactctga      1320
     taattcgtta tctaacattg aaaaatttaa ccatttgcta tcctgccttt ctgacgaggc      1380
     attgggcaca ataaaagctc ttcaagtctc agatacaaat tataaaaaag cattagcaag      1440
     tttaaagaga gtctatgaca acaagtgttt aattttcttc gaaaccctag cgcagctgtt      1500
     tgaaatccct tcaataacaa aaccttctgc gtctgccttg aggttaataa ttgacacagt      1560
     aagtgcaatt ttcgattcgc ttttgtccct aggggacgaa aaggatattg tcaatgcggt      1620
     aattatacac atagttcttt caaaagtaga tccgtacacc aaatcaaagt atgaggaaca      1680
     gcttaattat gatgaactgc ctaaatggcc tgattgcgta aaggttttag atcgacgata      1740
     tcaacatgtg tcagccgagg aagcgtcgag ggtaaaggga aaaggttttt cggaaatgcc      1800
     ctctggaagc aagaaaaata ctaggaattc atatacttgc tccagggtca ataacacaag      1860
     tgatccaaaa tgtttatact gcagttctaa tcattttata ggtaattgcc agggatttag      1920
     cggaatgcca gttttagatc gttttaactt tgccaaaatg aagcaattat gtattaattg      1980
     cctaaaggag ggacatagag tatttaaatg cacagcatcc aaatgccggg tatgctcaca      2040
     ggcacatcat actctactac atcgatacca aaactcgagt gagccacatc aaggtagaag      2100
     ctggcaggac cagcaagggc aaggtacttc tacttctcag gcttcttccc attcggctca      2160
     ggttattcaa gacacttcgg aaattaacca agtaattcta gcaacagccg ttgttaatgt      2220
     tcgcgataga tttggtcagc tccatcgagc cagagctcta ttagattcag ggtcgcaaat      2280
     taacttcatg acagaaagcc ttgctcagct tctaagattg tcaagaacaa ataaatgtct      2340
     ttcgatcaca tcagtgggag gatcaaattc cattgccaga agtgaagtca caactacctt      2400
     atattcgcgg ctcaatggac acatttttac gtctgacttt tgggtactgg gaaccataac      2460
     tagcaatcag ccagataata tgcttcctga aaggcagtgg aaaattccgg ccggcgtaga      2520
     cttagctgat ccagagttct acaagccgca aagaattgat attttgctcg gagcagactc      2580
     cttctttgag ttgttgtgca gtggtcaaac tcaccaatgg aggtccattg cttcaaaaaa      2640
     cactattggg atgggttgtt tctggacggt gtaagcaaca acaaaaagaa gctacttctt      2700
     gtatcgcctt gtccaaggaa gacatggttt tgggaggact tgttgaaagg ctttgggagt      2760
     tagataccgt cccagaaaac aaagaagttg ttaaattttc accagaacaa attgcctgcg      2820
     aggatcactt cgtgaaaaac gtagccaatt caaattgtgg tcgttttata gtccgtttgc      2880
     cttttaaatc tgatccgctc gtacttggat cctcgtttga tgtcgctaaa cgtagatttt      2940
     tatcgttaga gcgtagaagc ctaaaagaca gctcacttcg agaaatgtac accgctttta      3000
     tgaaagaata tttagagctg ggtcatatga ttccaacatg caataatatt ccaccaggac      3060
     cgcactactt cataccacat caatgcgttc tgaggcctga tagtacctca accaaacttc      3120
     gagtcgtgtt tgatgcgtct gcaaagacaa cttcagcgca gttattaaat gacattttaa      3180
     tggtggggcc cactattcag agggaactgt tattatcact tattagattt cgtttaaatc      3240
     gatacgcttt aactgcagat atatcgaaaa tgtataggca agtaagtctc gcagaagaag      3300
     atcgtaacta tcaactgata gtatggcgcg agaatccata tgatgaatta caaatatttc      3360
     gtctcaatac agtcacctac ggaacgtctt cagctccatt tttagccatc cgtagcttac      3420
     aagaacttgg atttcgtaat agggataagc atgaaatcgg ttcatacatc atttgcaacg      3480
     acttttatgt ggatgacatg cttactggag ctgatgatat tggcaccttg aacgtgatgt      3540
     gtaatcaagt gtcagaaatt ctcaatagtg gcggtttcca gctgtctaaa tggttttcaa      3600
     accatccaca actagaaaaa gggaacaaca ctgaaaaatc cctaaatttc aatgataccg      3660
     attcgaccaa agctttgggt atgcggtgga tgccacacac agacacattt cgatttcatt      3720
     tagatgagag ctttaaaaat ttgactccca caaaacgaaa cattctttca gtaagcgcgc      3780
     ggctttttga tcccttggga ttgctgtgcc ccattggcct tacatctaaa attcttcttc      3840
     aaagcctttg gcaacttcaa ctggaatggg atgaatccat tccgatgtcc ttacatacga      3900
     gttgggaaag gttaaagaag aatctactta atcttcacac agtcaccatt cctaggtaca      3960
     cgtttgccag tgggtgctca gccgttcaag ttcacggttt cgcagatgca tccagccaag      4020
     cttacggatg ttgcatttac attcgagcaa tcgaaaacgg taaagctaat tgtcgattgc      4080
     tagcagcgaa atcgagagtg gctccactaa aaacgaaaac cataccaagg cttgaattat      4140
     gcgccgccac actgttggca caattttggt cctacgtcaa acaagttctt gacaaatgtg      4200
     aaatcgagag tgtttatttc tggacagact cagaaataac actacattgg ataaagtctc      4260
     aaccttcatc acttgcagtt tttgtttcaa acagggtagc cacaattcaa gagctatcag      4320
     agaatatatc ctggcgacat gtcccttcgc agtttaatcc agcagacatt gcgtcccgtg      4380
     gctgcgatgt cagtgaattg acagagtcca tctggtttga aggtccgaaa tttctgtatg      4440
     aaaatgagtc attatggcca gaaaactcgc atttttctat accttccgaa ttaaaaaact      4500
     cagagttaaa aaaagctgcc caagtgtgta tagccgtcga gccatcaact ccgttcgaat      4560
     ttattactcg tatctcatcg tttcccaaaa tcattagaat tcttggatac gtttacagat      4620
     ttctaaacat agctaaatca cgagaaagat cagtaagtct gacggctaga gagttacaac      4680
     tatcattttt taaactgatg gaaatcatcc aaaaaaatgt ctttgcagta gagtacaaga      4740
     aaattaaaaa aggacatgtt ttacaaccaa gtttgcagat gatgacgccc ttcatacaaa      4800
     agttttctgc agctggtaga agattttcgc taattcgggt gggaggtaga cttttgcatg      4860
     cacctatttc agaaaatgct aaatttccga tattactccc ttctaaaaac caaattgttg      4920
     atttgtatct ccgagatttg catttgagaa attgtcacgc aaatgcaaaa acgatgatcg      4980
     gtcttcttcg gcaggaaatc tggttaataa atgctcgcag agaatgcact cgggtggttc      5040
     gaaaatgcat ccattgtttt agattctgat tttatctgat gaaccaaatt atgggaaatc      5100
     tgcctgcgga taggttcgaa tccgtaaggc catttcatat ttgtggcgta gatttgtttg      5160
     gtcctatcaa tgtctcgttg cgtatccgag gacggccccc cattaagatg tatatagctg      5220
     tattcgtctg ttttgcttcc aaggctgttc acctggaact cgttacaaat ttgtcgactg      5280
     actcttttct tttggccttt aaaagcttca tcgcaagacg tggcgtaccg catcgagtac      5340
     attccgacaa cgcgacgaac ttcgtaggag ccaggaacga gctacgaatt cttcagagcg      5400
     ccttcgagga tcagcagtcg cagtttcaac tgttcgtcgt cgagaaggga atcgagtgga      5460
     ggttcatccc accacgagca ccgcacttcg gcggtttgtg ggaggcggcc gtgaagtcag      5520
     cgaaggaaat tctcgtgcgt caagtcgcag acgcgtccct aaccgaagcc gaggtcaggg      5580
     cttatctggc ggacaccgag gccgtgctaa attctcgtcc tctaactcca atcagcatcg      5640
     atccaaacga gggggaggcg ctcactccag ggcacctgct aatcggtcag gcccttcgtt      5700
     cgctgccgca aggattagag ccagacgcac cgaccagagg tttgagattc tcaaagaggt      5760
     ggtaactgct atccacgctc agacagcggt tttggcaggc gtggtccaag gaatacgtcc      5820
     acagccttca gcgcaaaacc aagtggcaaa ctacatcgcc caatctggag gtcggagctt      5880
     tggttatcat ccacgaggac aacactccac cccagcgttg gattaccggc agggtcatca      5940
     gcgtggtggc aggggccgat ggtcgagttc gagtggccga aatcaagacc gcaacaggtc      6000
     acatatttaa gcgtcctatt caaaagctgg cggtactccc agtatgttga aggccggtcc      6060
     ttcaaggtgg ccggaa                                                      6076
//
ID   BEL-3_DTa-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   AFFI01006297;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DTa_;
KW   BEL-3_DTa-I; BEL-3_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-327
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006297; Positions    2936    3262.
XX
SQ   Sequence 327 BP; 95 A; 74 C; 59 G; 99 T; 0 other;
     tgttgaagcg cagaacgcta atcatgaagt tttaaattat gttaagatat aaataagtaa        60
     cagcttaaga gagcccaaca gcgttatgtt caccgcttac aggcccagaa catttatgtt       120
     agatctaaga tcggattcag cgggcctgca acggctctcg caaaactgcg ctgctgggca       180
     caataaacca gttgaatttt gaatatcgaa tcggccagtc ttgtcttttc tctcccccca       240
     aattttgcag cagccaagcc aagtcttttc acttttcggc gttctcaatt aaaaacaatt       300
     taaacttttt cgtttcgatt ttctaca                                           327
//
ID   BEL-3_DVir-I repbase;    DNA;    INV; 5587 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   19-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DVir-LTR;
KW   BEL-3_DVir-I.
XX
NM   BEL-3_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5587
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1777-1777 (2012).
XX
RN   [3]
RP   1-5587
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (19-FEB-2022).
XX
DR   [3] (Consensus)
XX
CC   [3]: 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           347..5584
FT                 /product="BEL-3_DVir-I_1p"
FT                 /translation="MATENNASSAVPSANRVTFLKRKAISIYDSLQTLRNA
FT                 LTNSPLSAIDECGLSVRLKQIERLQTSFDITHTSLEELDFDEIGNQLREDF
FT                 DELAVSMEISVRSEIAKRVSILPCSTFRDQSVLPSQTVRAKAPPTLPSIKL
FT                 PTFSGGYTEWADFYSMFTTVIENHPDLADIEKLQHLRSCLKDTALDAIRSL
FT                 EITNDNYAIALNLLEKRFNNRRLVFQAHILEILGLKRVAGGSAVSLRELSD
FT                 QFNAHFRALKSMGNSEQIAGCIIVQIILQKLDPISQAKWEERLEDSSFVNL
FT                 IPSWEHMATFLEQRCRTMETVNFAMASYAPSHQVGKTRAINTSRSSFIATN
FT                 HDAPVCVFCDSPGHSIYNCSRFGNLTPALRLREAKRVALCLNCLKKGHQLR
FT                 SCSSGCCRTCGAKHHSLLHLNNSVSPSGQLTEPANSSPIAHASFAKSSPST
FT                 STSLVAQYFSSDVVVLATAMIFVRNRSGTLIPCRALLDSGSQLHLITSRLA
FT                 QQLQLKKHKSSAIVSGLGDSRFETEGNTVTITIQSQVSEYSTCLTALVAPN
FT                 ITDSQPSFTINTTNWNIPXNIKLADPSFFKPQRVDLLLGASLFYDLLSVGQ
FT                 IRLLPGLPCLQKTRLGWVVSGGGPRLSGSMLMAKHTAGKLESSSEERADEL
FT                 VRRFWEIESCLESTPTTSKEENICEEHFVKTHIRLPSGQYSVRLPFKRSLE
FT                 CLGTSYQQAFRRFLTLERKLQNRPDLKIQYSNFLKEYLDLGHMSPVAPESI
FT                 GLCQYFLPHHCVFKEDSSTTKLRVVFDGSAATSSGYSLNELLMAGPVIQSS
FT                 LFHILLRFRNFPIALTGDIGKMYRCVRVSAPDDFLQCILWRDSPEQDIKIF
FT                 KLDTVTYGTKPASFLSIRAMHQLSMDEETNFPIGSRILRRDFYVDDLISGG
FT                 DSIQEAKELLNQTAGILASGGFKLRKWCSNNSAVLKGIPVEDRESSLKFDD
FT                 GSDITKTLGLAWDSASDRLLFSFSSIQQRSKPSKRSILSTIARLYDPLGLI
FT                 GPIIAKAKIFMQQIWKEKLEWDESLPSSLATAWHDLCCSFEKAQFLKFPRL
FT                 VSIPAAELEVHGFCDASIEAYGACVYVLSRRTSASCQLLCSKSRVAPLKTI
FT                 TVPKLELCGAVLLSNLMREISKMNLFDGKFYCWSDSSVCLSWIRTEPCKLN
FT                 VFVANRVTAVQELTNGMEWRYVPTSLNPADILSRGSTPSELDQSSLWFNGP
FT                 EXLVKNKLDWPASCLSERTELELKKRVLIASSPFVDITVTCKYVNSFDTMQ
FT                 RIFGYIYKFIHRSRHPGLTVSDIQHGTQLLLRLVQRAHLWEEIKSLQSRRV
FT                 VKPSSCIASLNPFLDDFGILRVDGRLKNSSLDFDARHPIILPCHHPITNSV
FT                 ITRFHNRDLHAGPRALLAHIRLQYWPIGGRKTVSKVVGKCVRCFRAKPRLI
FT                 EHIMGDLPKERLTACRAFEVSGVDYCGPFFYKPDVRNKAPVKCYMAVFVCF
FT                 ATKAVHLELVKDLSTASFLNALKRFISTRGRPSQIWSDNATNFVGAKNELL
FT                 DLKRLFTSRNHIESVHNFCMADSIDWKFIPPRSPHFGGLWEAAVKTAKHHF
FT                 YRAVGSCVLNFEEFRTLVCHIASIINSRPLFPLSEDPADLDVLTPAHFLIG
FT                 GPSSSFFEPDVTHLQFNRLDGWQRVTYLQQLFWSRWREEYLTLLQQRSKWR
FT                 TPKPGLCVNDIVLVKDENLPPLRWPLARITELIVGKDGVARVAILRTATGE
FT                 TRRAANKLCLLPIRESVESPCLPTGG"
XX
SQ   Sequence 5587 BP; 1462 A; 1291 C; 1237 G; 1595 T; 2 other;
     tttggtgacc ccgacgtgat ttttattttt gttgttgtaa gattatttgc tttacattaa        60
     agcaataatc ttaaaaggca ccacctggca tttcgttttg tgcactttat atacatacat       120
     acttatcgcc gtcgctttgc ctactctctc ggtcgcttaa agtctctgct cattcgtgcg       180
     gtacttatgt aaaagctatt gccgttgctt cattacatag cttgacactt gcgttcgccg       240
     aagttcttat tgtacaacta ttgttttttg aacggtttgc atgtactagc gatcaccgtt       300
     gttagttact cagctagttt cgcacgcgct ttctatcgcg cttctaatgg caaccgaaaa       360
     taatgcctct agtgcagtgc cctctgcaaa cagggtgacc tttctgaagc gcaaagccat       420
     ttcaatttat gacagtttgc aaacacttcg aaatgctcta actaattcgc cacttagtgc       480
     aattgatgag tgcggtctta gtgttaggct gaagcaaatc gagcggcttc agacctcatt       540
     tgatattact cacactagcc tcgaagaact agactttgat gaaatcggta accaattgcg       600
     tgaggacttc gacgagttag cagtttctat ggaaatttcg gttcggagtg aaattgcgaa       660
     acgtgtctca atattgccct gctcaacatt tcgcgaccaa tctgtgctgc cctcgcagac       720
     agttagagct aaggcaccgc caacactacc ctcaataaag ttgcctacgt tcagtggtgg       780
     ttacacagaa tgggccgact tttattctat gttcacaacc gtcatagaaa atcatcctga       840
     tctagcagat atcgaaaagc tgcagcatct tcgatcgtgc ctgaaggata cagcgctgga       900
     cgcgattcga tcattggaaa taacaaacga taattatgcc atagcactta atttattgga       960
     gaaaaggttt aataatagac gtttggtttt tcaggcacac atacttgaga tattggggct      1020
     caagagggtg gcaggtggat cggccgtgtc gctaagggag ttatccgacc aattcaacgc      1080
     acattttcgc gcgttaaaga gcatgggcaa ctccgaacaa atcgctggat gcatcattgt      1140
     gcagattatt ttacaaaagc tggacccaat atcacaagcc aaatgggaag aaaggctaga      1200
     ggattcgtcg ttcgttaatt taataccatc gtgggagcat atggctacgt ttctggagca      1260
     gagatgccga acaatggaaa ccgtaaattt tgctatggca agctatgccc ctagccatca      1320
     ggtgggaaaa actagagcaa ttaacaccag tagatcgtca tttatcgcca ctaaccacga      1380
     cgcccctgtc tgcgtctttt gtgacagccc tggtcatagt atatataatt gttctcgatt      1440
     tggaaatttg acccctgcat tacggcttag ggaggcaaaa cgagttgcat tgtgcttgaa      1500
     ttgcctaaag aaaggtcatc aattgcgatc atgcagctct ggatgctgtc ggacctgcgg      1560
     ggcgaaacat cattctctgc tgcatttaaa caattccgta tctccgtctg gtcagctgac      1620
     tgagcctgca aattcatcgc cgatagccca tgcctctttc gctaagtcat cgccatctac      1680
     ctccacatct cttgttgccc agtatttcag tagtgatgtt gtcgtcttgg ctacggctat      1740
     gatctttgta agaaatcgct ccggcacttt gataccttgt cgtgcccttt tggattctgg      1800
     ttctcagctt caccttataa cgtcgcgcct tgctcaacag cttcagctaa agaagcacaa      1860
     gtcctcagcc attgtctctg gtctaggaga ttctcgtttt gaaacagaag gaaacacggt      1920
     cactatcaca atacagtctc aagtctctga atactcaaca tgccttacag ctctggtagc      1980
     gcctaacata actgatagtc aaccgagttt tactatcaac acgacgaatt ggaacattcc      2040
     cgmtaacata aaacttgcag atccgtcttt ctttaaacct caacgcgtgg acttgctact      2100
     tggagctagc ctgttttacg accttctcag cgtcggccag ataaggcttc tcccaggact      2160
     accgtgtctt caaaaaacac ggcttggttg ggtagtttct ggaggcggac cccgcttgag      2220
     tggttctatg ttaatggcaa agcatactgc gggcaaactt gagtcaagtt ctgaagaacg      2280
     tgctgatgaa ttggttcgaa gattttggga gatagaatcc tgcttggaaa gtacacctac      2340
     cacttcaaag gaagaaaaca tctgtgaaga acatttcgta aagactcata tcagattgcc      2400
     tagtggccaa tattcagttc gtttaccctt caagcgaagt ttggaatgtc tggggacgtc      2460
     ataccaacaa gcctttcgtc ggttcctgac cctggaacgc aaactacaaa atcgtccaga      2520
     tctgaagatt caatattcaa actttctaaa ggaatatttg gatcttggtc atatgtcgcc      2580
     tgttgctcca gagtctatag gactttgtca atactttctt cctcatcact gtgtctttaa      2640
     agaagacagt tcaacgacaa aattgcgagt cgttttcgac ggctcagcag ctacctcgtc      2700
     aggttattca ttaaatgaac tattgatggc tggacctgtt attcaaagct cgctgtttca      2760
     tatccttctt cgctttcgta atttcccgat cgccctaaca ggagatattg gaaaaatgta      2820
     tcgctgcgta cgcgtttcag caccggatga ttttctccaa tgcattctgt ggcgagactc      2880
     gccagaacag gatataaaga tttttaagct ggatacagtt acatacggaa caaagccagc      2940
     ttcattcctc tctatccgtg ctatgcatca gctgtctatg gatgaggaaa ctaattttcc      3000
     aattggatct cggattttgc ggcgtgactt ctacgttgat gacctcattt cagggggtga      3060
     ttcaattcaa gaagcaaagg aacttcttaa tcagacggct ggaatcttgg caagtggggg      3120
     cttcaagttg cgaaagtggt gctcaaacaa ttctgctgta ctgaaaggga tacccgtaga      3180
     ggacagagaa tcttccctaa agtttgatga tggtagcgac atcaccaaaa ctcttggact      3240
     cgcttgggac tcagcgtcgg atcgattgtt gttttcgttt tcgtccattc agcagagatc      3300
     taaaccatca aaaaggtcaa tactatcgac catagctcgc ttgtatgacc cgcttggact      3360
     catagggccg ataattgcca aggctaaaat ctttatgcag cagatctgga aggagaagct      3420
     tgagtgggac gagagcttgc catcatcact ggcaacagct tggcatgatc tttgctgcag      3480
     ttttgagaag gcacagtttc ttaaatttcc tcgtctcgtg tcaatacctg cagcagagtt      3540
     agaagttcac ggtttctgcg acgccagcat cgaagcatat ggggcctgtg tctacgtcct      3600
     ttctcgacga acatcagcca gttgtcagct gttgtgttcc aaatcgcgtg tagctcctct      3660
     gaaaacaatc acagttccaa agctagagct ctgtggtgcc gtcttattat ctaatctcat      3720
     gcgtgagata tctaaaatga atctgtttga tggaaaattc tactgttggt cggattcttc      3780
     tgtatgcctt tcctggataa ggaccgagcc ctgcaagctc aatgtgtttg tggctaatcg      3840
     cgtcacagca gttcaagagc taactaatgg catggaatgg cgttacgtgc ctacttcact      3900
     caacccggca gatatactct cgagaggatc tacgcccagt gaattagatc aatcgtcact      3960
     gtggttcaac ggcccagaat wtctagttaa aaacaaattg gactggcctg cttcttgctt      4020
     gtcagaaagg acagaactcg aacttaaaaa aagggtcctt attgcgtcat ctcccttcgt      4080
     tgatataact gtcacttgta aatacgtcaa ctcatttgat acaatgcagc gtatattcgg      4140
     atatatttat aaattcatac acagaagcag gcatcctgga ctaacagtgt ctgatataca      4200
     acatgggacc caactcttac taaggctcgt ccagagagca cacctgtggg aagagatcaa      4260
     atcattgcaa tcgagaagag ttgttaaacc gtccagttgt atcgcatcac ttaacccttt      4320
     tttggatgat ttcggaattc ttagagttga tgggcgcttg aaaaactctt cgctggattt      4380
     cgacgctcgc catccaataa ttctcccgtg tcaccacccc atcacaaact cggtcatcac      4440
     acggtttcac aatcgggact tacacgctgg tccacgggca cttcttgctc atattcggtt      4500
     gcagtattgg ccgattggtg gaaggaagac cgtatccaag gtggttggaa aatgtgtgag      4560
     atgctttcgt gccaagcctc gattaataga gcatataatg ggtgatctgc ccaaagaacg      4620
     tttgactgct tgtcgagcct ttgaagtctc tggtgttgac tattgtggac catttttcta      4680
     taagccagac gtacgaaata aagctccagt caaatgttac atggctgtct tcgtctgctt      4740
     cgcgactaaa gcggttcacc tggaactggt caaggatctg tcgacagctt ctttcttgaa      4800
     tgcgcttaag aggtttatat cgactcgagg caggccatct cagatatggt cggataacgc      4860
     taccaacttt gtcggcgcca aaaacgagct tctggatctc aagcgtctat ttacaagtcg      4920
     taatcatatt gagtcagtgc ataatttttg catggctgat tccattgatt ggaaatttat      4980
     acctcctcgt tcaccgcatt ttggcggcct ttgggaagca gcagtgaaga cagcgaaaca      5040
     tcatttttat cgtgctgttg gatcttgtgt tctcaacttc gaagagtttc gcaccctagt      5100
     ctgccacata gcatcgataa ttaattccag gccattgttt cctctttcag aagatccagc      5160
     agatctagat gtgctcactc cagctcattt cttgattggt ggacccagct catcgttctt      5220
     tgaacctgat gtgacgcacc ttcaattcaa tcgtctggat ggttggcaac gcgtaacgta      5280
     cctccaacaa ctgttttggt ctcgctggcg tgaagaatac ttaacactgc ttcagcagcg      5340
     ctccaaatgg cgtactccga aaccaggcct atgcgtcaac gacatagtcc tcgtaaagga      5400
     tgaaaatctg ccgcctctaa ggtggccact ggcgagaatc acagagctaa tcgtgggaaa      5460
     ggatggagtc gctcgagtag ccattttgcg caccgcaaca ggggaaacga gaagagctgc      5520
     aaacaagcta tgcctattgc ccatcaggga atctgttgaa agcccatgcc ttccaacggg      5580
     gggagaa                                                                5587
//
ID   BEL-3_DVir-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DVir_;
KW   BEL-3_DVir-I; BEL-3_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-487
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1778-1778 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 487 BP; 149 A; 104 C; 81 G; 153 T; 0 other;
     tgtctggtta cgcagccaaa acaactggag cgacctcgca actgataaga gcagcatctt        60
     aattttatct tataatactc gctctgcaaa gcaagtgcct aaatttcgct cttaagaatt       120
     catttacata gagctgccgc tcttcgctgt aacgatcgtt ttattgccct agctttactt       180
     atgcgaaggc ctcgatgctg cgcatcgagt tagttaagtc agttcgcttc atgcatttgg       240
     tacgcatcgg ccacttgcat tactcaaaat tataactaat aattgtctct tcgctaaaat       300
     tggcacgtac taattcgggt tcgcttgcct atatacaaac tattgttctt aaataataag       360
     cacagaccaa ttcgggtctg cctgcttctc gtaactttaa gaaatataaa acaattttga       420
     acacaaaaaa taaatagtta attatttcta tttgtgaaag ctattgaaaa agctcaatag       480
     cgcaaca                                                                 487
//
ID   BEL-3_DWil-I repbase;    DNA;    INV; 5679 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DWil_;
KW   BEL-3_DWil-LTR; BEL-3_DWil-I.
XX
NM   BEL-3_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5679
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4658-5233] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..5676
FT                 /product="BEL-3_DWil-I_1p"
FT                 /translation="MEEMKTFIKARGRLKTTITRIYGYAENPAQDADVFAI
FT                 DTKLETLSNAWNEFVKSGDELAKYDKLEGYVDPTEDFGIYEEKYEIANARL
FT                 KALRAALAPSGKLEEIGAAGNDGSLFQGILQQMQNQQQQLQLQMQGQMEHQ
FT                 RRQMELQMQSQMEHQQRQMEQQQLLVERLLSPQQSSSSSGSQSVATAATRD
FT                 CELPKINIKPFGGDYKEWHAFKDLFESTIHGKTTLTNIQKFHHLKSCVIGE
FT                 AAILIQHLPVVASNYDVAWKSLSDRYEKPRYLVNLLMDTFTALPKAVGQNS
FT                 SSLRALTCGASDVIRALDASGQTGRDCWLIYLLINKVDEATRREWIDKSQD
FT                 IENPTIEELLKFLDSRCDRLELSQVVDHAASKPRDEKGKRQARTMLAITGN
FT                 CMKCHSTEHILSACPQFQSLTVKQRYTFAKEKHMCFNCLRTGHGVSACGSK
FT                 SSCKYCKRRHHSMLHSEGHSTQQNSSEQHQGNSGQASEESPAASAIAMMNV
FT                 TRPSKPNGQRRSTLPTALVHVRNAQGALLTCRILLDSASDLSFISERCVQT
FT                 LGLARSPFRVATSGISDVKAGITRGFCSLQMMSRVSSHCIDIKAHILGKIT
FT                 SPLARENIDASSLSVFNGYQMADPDFRTNASIDILLGNDCIWLVLTGEKLC
FT                 DGQGHPIAVNTIFGWVITSVYTSRLQTSSTSLLTTVNIDGLLQRFWELEEV
FT                 PSHTTVNEEDEKVETHFRRTHNRNSNGRYIVDLPFKEQNPQFADTFQGARS
FT                 RFLAVERRLMKDSSLKLKYTQFMREYIQLGHMKEVAADEDTNVCKKSFYLP
FT                 HHPVIGAKLRVVFDGSFQDRDGRSLNDALHIGPCIQRNLFNVCLRFRMHRF
FT                 VFSADIVKMFRQILVAPEHQNFQRILWREDPEEPLKHYKLTTVTYGTACAP
FT                 FLAVRVLEQLATDHEYEFPRAARILLDDFYVDDVLTGAMNEQELLDIKEEL
FT                 ILLMSRAQLELSKWVSNSKRIASNEGNEIDFSKMAAKVLGLHWRPGEDVLT
FT                 YKVSLSEHMTCTKRQVLSDTARIFDPLGILAPVVIKFKILLQELWLLNLDW
FT                 DSELPTKQAHLWQTFRKDIFTLRNLKIPRFVDNQPDDIELHGFSDASLKAY
FT                 SAVIYNRVTHLDGSIGVALIAAKTRVSPLKQKSLPRLELCGALLLARLFQA
FT                 VRSGLRQKDVKIHAWTDSTIVLSWLSHQPCKLKTFVANRTAEILETIPRSA
FT                 WRHVSTKENPADCASRGMLASDLINFDLWWKGPSWLHDCTLYSETMNRPPT
FT                 CCSILKPAAELEFKTNILTTISKDIEDSPFEVLLGRTSSWIRLVRVVAYVF
FT                 RFVHRIRSSKSKYSGPLKFDEITRARKFCLRQAQNQFNDDRQLLLRKQPVE
FT                 RRSILNKLSPFVDEDGIVRVGGRLERSQLPADAKHPVVLPKQHRLVELLLK
FT                 HEHKVNLHPGVSAMFVIIRQKYWIIGARNLIRRITHECLNCFRQRHHTANQ
FT                 FMANLPAVRVRQAFPFEHTGCDYAGPILLKVHKGRNPRKEKGYICLFVCMV
FT                 TSALHLELATDLSTDTFLAALKRFMARRGKCSQMYSDNGRNFVGAKRALDE
FT                 MVQLLASREHNDVVSKALADQGIKWNFIPPYSPHWGGKWESAVRSVKLHLR
FT                 RVIGTNVLTFEQMHTLLSQIESVVNSRPLCTASDTEIAYLSPAHFLIGRTY
FT                 TAVPEDSYLQIPTNRLSYWQHVQAMLQGFWKRWHQEYLTSLQQRPKWTTKL
FT                 PNIAIGNLVLIKDSNAPPSAWLLGRVTQVFTGDDGLVRAVQVLTKSGEVTR
FT                 PITKIAALPGSETEFQGGA"
XX
SQ   Sequence 5679 BP; 1638 A; 1285 C; 1340 G; 1416 T; 0 other;
     taatttggtc cttcgagccg gatcgttggg cattgtttgt ttgttactca ttgcttaata        60
     atttgttgca acgtggttgc aattaattgt taacctcaaa gttagtagtc gatagttctg       120
     gcctactatc gaatagacaa tcgcgtgctt attggaaaaa gcgcggacaa acggtggcgc       180
     cactcgccta tcggtatctg ttatcgatat aatcgacgag atcgtgaggg aacacatctc       240
     tgggagaaac acgcgtcttg aaatttttgg tccacacaag cagtggaaat ttcttgacat       300
     ttcatcatgg aggaaatgaa aacattcata aaggccagag gaagattgaa gacaaccatt       360
     acccgcatat atggatatgc agagaatcct gcacaggatg ccgacgtctt cgcaattgac       420
     accaaattgg aaactttgtc caatgcgtgg aacgagttcg tgaagtctgg cgacgaattg       480
     gccaaatacg acaaactaga gggttatgtg gaccctaccg aagacttcgg gatatacgag       540
     gagaaatatg aaatagcaaa tgcccgcctt aaggctttac gagctgcctt ggctccgtct       600
     ggcaagttgg aagaaatcgg cgcggctggt aacgatggtt cgctcttcca aggaattctg       660
     caacaaatgc agaatcaaca gcaacaacta caactccaga tgcagggtca aatggaacac       720
     cagcggcgtc aaatggaact ccagatgcag agtcaaatgg aacaccagca acggcaaatg       780
     gagcagcagc aactattggt tgagagattg ctctcgccac agcaatcttc gtcttcgtca       840
     ggctcacagt cggttgcaac agcggcaaca agagattgtg agttaccgaa aatcaacatc       900
     aagcccttcg gtggagatta caaggaatgg catgccttta aagacctgtt tgagagtacc       960
     attcacggaa agacaacttt gacgaatatc caaaagtttc atcacctgaa gtcatgcgtc      1020
     ataggagaag cagcgatact catccaacat ttgcccgtgg tggcatcaaa ttacgacgtt      1080
     gcatggaaat cattgagtga tcgatatgaa aagccccgtt acttggtgaa tttactgatg      1140
     gacacattca ccgcattgcc aaaagctgtt gggcaaaact catcatcgct acgcgctctg      1200
     acatgcggag ccagtgatgt tattcgggct ttagacgctt ctggacaaac gggccgtgac      1260
     tgttggctca tatacttgct catcaacaag gttgatgagg ctacccgacg tgaatggatc      1320
     gacaaaagcc aggatattga aaatcctacc attgaagagt tgctcaagtt tttggactca      1380
     cgatgcgatc gccttgagct cagtcaagtg gtcgatcatg cagcgagcaa accgagggat      1440
     gaaaaaggaa aaaggcaagc acgcaccatg cttgccatta caggtaattg tatgaaatgt      1500
     catagtactg agcacatact gtcggcttgt cctcaattcc agagcttgac tgtcaagcaa      1560
     cgttacacct ttgcgaagga gaaacatatg tgttttaatt gtttgagaac tggacatgga      1620
     gtaagcgctt gtggctcgaa gtcttcttgc aagtattgca agcgccgcca tcattctatg      1680
     ctgcattctg aaggccattc tacacagcaa aatagctcag agcagcacca aggcaactca      1740
     ggccaggctt ctgaggagtc accagcggca tcagcgatag caatgatgaa tgttaccaga      1800
     cccagtaagc caaatggcca acgaagaagc actctaccta ctgcattggt acacgtccga      1860
     aatgctcaag gagccttgct gacgtgccgt attttattgg atagcgcctc agacttgtca      1920
     ttcatttcgg aacggtgcgt acagacgttg gggcttgcac gttcgccatt tcgagttgcc      1980
     acatcgggca tctcagacgt caaggcagga ataacaagag gtttctgctc tctccagatg      2040
     atgtctcgtg tgtcgagtca ttgcatcgat attaaagctc acattttagg aaagatcacc      2100
     tcaccattgg cacgtgaaaa cattgatgct tcatcactgt cggtatttaa tggataccaa      2160
     atggctgacc ctgacttcag aactaacgcc tcaatcgaca ttttgctggg caatgattgc      2220
     atttggttag ttctcaccgg agagaagtta tgcgatggtc aagggcaccc tattgcagtt      2280
     aacaccatat ttggatgggt aatcacatcg gtatacactt caagattgca aacatcatct      2340
     acgtcattgc tgactacggt taatatagat ggactactgc aaagattttg ggaactagag      2400
     gaagttccat cacacacaac tgtaaacgaa gaggatgaaa aggtcgaaac gcacttccgg      2460
     cgtacccaca accgcaactc gaatggaaga tacatagtcg atttgccctt caaggaacaa      2520
     aacccacaat ttgcggatac atttcaagga gcgagatcgc gctttctcgc agtcgagcgt      2580
     cgtctaatga aggactccag cttgaagtta aaatatactc agtttatgag agagtatatc      2640
     cagctgggtc acatgaagga agtagctgca gacgaagaca caaacgtatg taagaagtca      2700
     ttctatttgc cacaccatcc agtcataggc gccaagctgc gggtggtgtt cgatggatca      2760
     tttcaagatc gggatggacg atctcttaac gacgcacttc acattggccc atgtatacaa      2820
     cgcaacctct tcaacgtttg tctgcgtttt cgaatgcaca gattcgtatt ttctgcggac      2880
     atcgtcaaaa tgttcagaca gattttagtg gcccctgaac atcagaattt tcaacgaatc      2940
     ctttggagag aagaccctga ggaaccattg aagcattaca agttgaccac agtcacctat      3000
     ggcacggcat gtgcaccgtt tctggcagtt agagtgctgg aacaactggc aactgatcac      3060
     gaatacgagt ttccaagggc ggctaggata cttttggatg atttctacgt cgatgacgta      3120
     ctgacaggag ccatgaacga acaagaactg ctcgacatta aggaagagct gatactcctt      3180
     atgtcacggg cacaattgga gctaagcaaa tgggtctcga atagtaaacg aattgccagc      3240
     aacgagggaa atgaaatcga tttctcaaag atggcagcaa aggtgcttgg gctgcattgg      3300
     cgtcctggag aagacgtcct aacatataag gtttcattat cggaacatat gacttgtacg      3360
     aagcgacaag tgctatctga cacggcacgc atctttgacc cactcggcat tttggcgcca      3420
     gtggtgatca agtttaaaat tctgctccaa gaattatggc tgcttaatct ggattgggac      3480
     tcggaactgc caacgaagca agcgcactta tggcaaacat tcagaaagga cattttcacg      3540
     ttaaggaacc tgaagatacc acgatttgta gacaatcaac ccgatgacat cgaactgcat      3600
     ggattttcag atgcttcgtt aaaggcttac tctgctgtca tttacaaccg tgtgacacac      3660
     ctagatggaa gcatcggagt ggcactcatt gcagctaaaa caagagtttc accattaaag      3720
     cagaagtcgt tgccacgatt ggagctttgc ggagctctac tattagctcg tttattccaa      3780
     gcagtaaggt ctggtctgcg ccagaaggat gttaagatac acgcatggac cgattctaca      3840
     atcgttttgt catggctttc gcatcaaccc tgtaaactta aaacatttgt tgccaaccga      3900
     acggcagaaa tactagagac cataccacgt agcgcttgga gacatgtcag cactaaagag      3960
     aatcctgcag attgtgcatc acgaggcatg ctagcgagtg acttaattaa ctttgatcta      4020
     tggtggaagg gaccatcttg gctgcacgac tgtacactat actcagagac aatgaataga      4080
     ccaccaactt gctgctcaat tctcaagcca gcagcagaac ttgagttcaa aaccaatatc      4140
     ttgacaacca tttccaagga tattgaggat tccccatttg aggtactact cggaaggaca      4200
     tcatcttgga tcagactggt tcgagtggtc gcatatgtat tccgcttcgt tcatcgaatc      4260
     cgatcaagca agtctaaata ttcaggacct ctaaagttcg atgaaatcac cagagcaagg      4320
     aagttttgcc tacggcaggc acaaaatcaa ttcaatgacg atagacagct gcttttgagg      4380
     aagcaacctg tggagcgacg atcaatttta aacaaactat ctcccttcgt tgacgaagat      4440
     ggaattgtac gtgtgggtgg acgtttggaa aggtcgcaat tgcctgcaga tgccaagcat      4500
     ccagtagttt tgccgaaaca acatcgcctt gtggaattgc tgctgaaaca tgagcataag      4560
     gtcaatcttc atccaggagt ttcagcaatg tttgtaataa ttcgccagaa atattggatc      4620
     attggcgcac gaaatcttat tcgacgtatc acacatgagt gtttaaactg ttttagacag      4680
     cgccatcaca cagcaaatca gtttatggcc aatttaccgg ctgttcgagt gcgacaagcc      4740
     tttccatttg agcatactgg atgcgattat gctggaccta tcttgttgaa ggttcacaag      4800
     ggacgaaacc ccaggaagga aaagggctac atttgcctgt ttgtatgtat ggttacttca      4860
     gctcttcatc tggagctggc cactgatctc agcaccgaca cattcttggc ggcattaaaa      4920
     cgttttatgg ctcgtcgtgg gaagtgctcc caaatgtata gcgataacgg gcgcaacttt      4980
     gttggcgcaa aacgtgcact agacgaaatg gtacagcttc tcgcttcacg cgagcacaat      5040
     gatgtcgttt caaaagccct tgcggatcaa ggcatcaaat ggaattttat tcctccatat      5100
     tcaccacact ggggtggtaa gtgggagtcg gcagtacgct cggttaagct gcatttgcga      5160
     cgtgtaatag gaaccaacgt cctcaccttt gagcagatgc acacactgct ctcgcaaata      5220
     gaatctgtcg ttaattcgcg accattgtgc acagcatcgg atactgaaat tgcctacctg      5280
     tcaccggcac atttcttaat tggcagaaca tatacagcag ttcctgaaga cagctatttg      5340
     cagattccga ccaatcgatt gagctactgg cagcatgttc aagcaatgct tcaaggattt      5400
     tggaagcgtt ggcatcaaga atacttgaca tcgctacaac agcgcccgaa atggaccacc      5460
     aagttaccaa acattgcgat cggtaatctt gtactgatca aggactctaa cgcgcctcca      5520
     tcggcatggc tcttaggacg ggtaactcag gtgttcacag gagatgatgg cctcgtcaga      5580
     gcggttcagg ttctcaccaa atcaggagaa gtcactcgcc ctatcacgaa gattgcagcc      5640
     ctacctggtt cagaaacgga gtttcagggg ggggcggga                             5679
//
ID   BEL-3_DWil-LTR repbase;    DNA;    INV; 332 BP.
XX
AC   scaffold_177548;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DWil_;
KW   BEL-3_DWil-I; BEL-3_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-332
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_177548; Positions     947     616.
XX
SQ   Sequence 332 BP; 102 A; 56 C; 62 G; 112 T; 0 other;
     tgttgaggaa ccaattgtca tttaacttac attgctatac gcagcaaggc aaggactcat        60
     gaatgatctt gcacatctca caatgctttt gtttttgtat tttctcttaa gttttctaga       120
     atatactggc gccagtctgg tatgctctgt ctctgtcact ctttataaac ctatatgtcc       180
     tacgtagttg cgtaagaatt gaaaatttag taataagcaa gcaaacgaac gatcaagatg       240
     tgttctggca gtggcagaca cagttcagta acattgaagt aaaaataaag ttaagttctt       300
     atgagatatt aaacacagtg gtttattgtt ca                                     332
//
ID   BEL-3_DYa-I repbase;    DNA;    INV; 6271 BP.
XX
AC   .
XX
DT   07-APR-2011 (Rel. 17.09, Created)
DT   07-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DYa_;
KW   BEL-3_DYa-LTR; BEL-3_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6271
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1779-1779 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5318-5893] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1091..6241
FT                 /product="BEL-3_DYa-I_1p"
FT                 /translation="MSLETKNKSVLEELKSKLQSRVRTIRRLNERLETGSI
FT                 PLLEEELKCRLENLNASISKANQLQEQIEDIDCSDEFGDELEELCIVTKAK
FT                 IMSLLSALKVASVSEAPGSAAVAPTRARLPNLALPKFSGDYSEFKNFISLF
FT                 ETLVHKDASIPVIEKFNHLISCLSGEALGTVKAYQVTESNYEKALASLKKV
FT                 YDNECLIFMNNISTLFSLPKISHQSASSLRNLIDTVSSIYGSLLSIGDDTK
FT                 ISNAMLIYLVLNRVDPVTKQKWEEQLDYETLPLWADFEKMLNRRYQHLSAE
FT                 ESTKPKQDKIVSSKPHNRSSFSCSFSNSKPQQTCSYCNAADHLLQNCSPFG
FT                 RLSVMQRFEFVKSASLCINCLRKGHTVSKCKGKKCRACDRSHHILLHRYTV
FT                 PENSLALPPPPETMSPTFNQDQPSTSHVMHATSLDRVILATSIVSVRTKNG
FT                 EYVLARALLDSGSQTNFITEELANRLQIRREESCINLLGIGESNSQVKKKV
FT                 HTVVKSRINGSEFSFDFWILKSISGYHPDQSVNVSDWKIPKNLPLADPYFY
FT                 KSQKIDMLIGAESFFELLAVGQIRQGPDYPTLQKTLLGWVVSGRYKSAVPK
FT                 QVVNSFSCSEEPLVSIDSTLQKFWSLEEMPNPKKILSPEHKLCEDHYRKTT
FT                 QVLPSGRFEVRLPFKSDPNGLGNSFEVAKRRFLSLERRLSRDPNLKTMYLE
FT                 FMEEYLALGHMSPTDNKIPSTPHYVIPHQCVLRPQSTSTKLRVVFDASCKT
FT                 SSQVALNDILMVGPTIQEELYSTLLRFRLHRYALTADVKKMYRQVMVNEAD
FT                 RKFQLIVWRRDPSESLRLYKLNTVTYGTGPAPFLAIRCLKRLSESAKCSFP
FT                 RAADVIGSDFYVDDMLTGAACVEELKTIKSEVSQVLQTAGFELTKWFSNSP
FT                 EVTASESTVKSIPISDSESTKALGISWLPSEDAFKFKIDTSVMGLRATKRN
FT                 ILSVTSKLFDPLGLLSPIVIKGKILLQELWLNKLDWDESIPMHLETAWDML
FT                 KSTLSQLDEISIPRFVHTDPLSPVQLHAFADASMRAYGACVYIRSKTAEGF
FT                 KLSLLTSKSKVAPLKTKTLPRLELCAAHLLADLCHRIKPLLKVPIERIVYW
FT                 SDSEVTLHWIRSHPSSLSTFVSNRVAEIQEWSGEATWRHVPTKQNPADIVS
FT                 RGCDVDEIGQSIWFTGPPFLKDEEENWPKNAHFEPDEEVLRQEARKTVVGL
FT                 TAAVQTSDLLDVIEGFSSHLKLLRVFAYMFRFIRKCKDKSIVFEETLSPTE
FT                 YNEAFHKIIEIVQKHEYQVEIEKVRKGSKVGPSLQRLNPFIHEDTGTWCNF
FT                 SLLRVGGRLANAPISYDAKFPLLLTKRSQFVQSYVRHLHHSNFHVGPRALV
FT                 SILRQRIWTVNAQELCSQTVRSCVRCFKCKPRLMTQIMGNLPADRLRALRP
FT                 FAICGVDFCGPVYTTLKIRGRPPYKSYVALFVCFASKAVHLEIVSDLSTDS
FT                 FLLAFQRFIGRRGCPQTVHCDNATNFVGASRHFLALRDRIEEQADAIREFA
FT                 SKSGCEFAFTPPRAPHMGGLWEAGVKTAKHLLLRAVGSALLNAEELATVLV
FT                 GIEATMNSRPLGALSQDPSDGEALTPGHLLTGGPLIAAPALRTPDQAGLSC
FT                 LRRWRLVSSVRQTFWRRWSREYVLGLQVRGKWHEEKANVEEGQLVVVAEDN
FT                 LLPQQWLLGRIVATHAGEDGKVRVVDLRRSDGAIFRRAIHKLAPLPIC"
XX
SQ   Sequence 6271 BP; 1736 A; 1372 C; 1441 G; 1722 T; 0 other;
     tggcgccccc gggtggacaa gataattagt ttaaacaaaa ggcaacattt aattaaagtg        60
     acagtgacac atatataata taatatataa aagtgcaaca taaaaaattg ttctttgttt       120
     ttttttttgt gagtgcaaat aaataaatat attgttgccc gcgacgcgct attgtgttta       180
     aacaataaat atttcttaaa catattccgt gtcggtcgcg aaataccctg cttccggaat       240
     tgccgccacc accgagggaa cttttaagga aagtggccgc taaaattagc attcggaaat       300
     cacaggtatt tgtgcaaaaa attgaaagct agagttatag acaaatttaa tgtttattgt       360
     cttgtgctgg aatattgcac ctcgctttca gttcttggca catatgtacg tatcaatata       420
     gtagagctag attgcatgca aattattcaa tttattggtt gataaaataa atacacatac       480
     atatattgaa ccgctttgga cgcaacattt atttattatt ttgtactgta ttattgcaat       540
     cactgtcgcc ccccttcccc ctctcgttcg ttgaaactcg cattaatagt tgggaagtta       600
     atccaagctt gcgcactaat acacagacag ccttatatac tagcagctgc agcggtgaac       660
     ttttcgtttt cgcttcgctt ttgcaccgct acctgcgttg ttgttgtttg gccctttttc       720
     gttggcgcgc ttagattagc ggaccgtcaa gtgacgctct accctgtatt ctgcgggtat       780
     acccttttcg gcgtcatttc gcacccacta ttaattgata ctgcgtgact tgaatttcaa       840
     tttaaataat ttgttttcgt tgttctcatc agaaaaatat ttaatataca tttcgaacaa       900
     taaattaata atttatgaaa ttaaaaataa cctatttttt tggtttaata aatttctaat       960
     tattgattcg aaggttatta aattatattg tcggtctgat ttgagataat ttgtttcggc      1020
     catttattta tttaattcgg aaataaaatt taattaattt aatttaatta atttaaatat      1080
     ttaatttaaa atgagcctag aaaccaaaaa taaatctgtt ctggaagagc tgaaaagcaa      1140
     gctccaaagt cgggtcagaa caattcgccg attaaatgag cgattagaaa cgggatcgat      1200
     tccgctatta gaggaagaat tgaaatgtcg actagaaaac ttaaatgctt caattagtaa      1260
     ggcaaatcaa ttacaagaac agatagaaga catagattgt agcgatgaat ttggcgacga      1320
     gttggaagag ctttgtatag tgaccaaggc aaaaataatg tccctgttgt ctgccttgaa      1380
     ggtagcaagc gtcagcgaag ctccgggatc agctgctgta gctccaactc gtgcgcgact      1440
     tccgaatttg gcattgccaa aattcagtgg agattattcg gagttcaaaa atttcatcag      1500
     ccttttcgaa actttggttc ataaagacgc cagcattcca gttatcgaaa aatttaacca      1560
     tttaatttca tgtctctctg gtgaagcttt aggaacagtt aaagcttacc aagtcaccga      1620
     gagcaattac gaaaaggcac tagccagttt aaaaaaggtt tacgataacg aatgcctcat      1680
     ctttatgaat aatatatcaa cattgtttag tctgcctaaa atatcgcatc agtccgcttc      1740
     ctccttgaga aaccttatcg atactgtttc ttcgatttat ggttctctgt tatcgatagg      1800
     agatgataca aaaatttcga atgcaatgtt gatatatttg gtattgaata gagtcgaccc      1860
     agtgaccaaa caaaaatggg aggaacagct cgattatgag actttgccgc tttgggccga      1920
     ttttgaaaaa atgttaaatc gccgatatca gcatttatca gctgaagaat cgacaaagcc      1980
     gaagcaagat aaaattgtgt cgagcaagcc acataatcgt agctcattct cgtgttcctt      2040
     ctccaacagc aagcctcagc aaacttgtag ctattgcaat gcagcagatc atttgctaca      2100
     gaattgtagc ccgtttgggc gtctctctgt aatgcaaagg ttcgagtttg ttaagtctgc      2160
     ctccttatgt atcaattgtc tgcgaaaagg ccatactgtt tcgaaatgca aaggcaaaaa      2220
     gtgtcgagct tgtgaccgct cacaccatat tctgcttcat agatatacag tgcctgagaa      2280
     cagtttagcg ttgccacccc cgccagagac catgtctcct acttttaacc aagatcagcc      2340
     ttccacgtca catgttatgc atgccacgtc cttggacagg gtgattttgg ctacgtcaat      2400
     cgtaagcgtc cgtacgaaaa acggagaata cgttttggcc cgagctctgc tggactctgg      2460
     gtctcaaacg aattttataa cagaagaact ggcgaaccgc ttacagattc gtagagagga      2520
     gtcgtgtatc aacttacttg gtattggcga gtccaattct caagtcaaaa aaaaggtaca      2580
     cacagtggtg aagtcgcgaa taaatggtag tgagttctcg ttcgatttct ggatcttaaa      2640
     gtcgatctcc ggttaccatc ctgatcagtc ggtgaacgtc agtgattgga agatcccgaa      2700
     gaacctacca ttagcagacc catatttcta caagtcacaa aaaattgata tgttgatagg      2760
     agcagaatca tttttcgaat tgctagctgt tggtcaaatt agacaaggtc ctgactatcc      2820
     aactctacaa aagacccttc ttggttgggt tgtttcgggc agatacaagt ctgcagtccc      2880
     gaaacaagtt gtgaatagtt tcagttgtag tgaagaacct ttagtatcga ttgacagcac      2940
     actacagaaa ttttggtcgc tggaggaaat gccaaatcca aagaaaattc tgtcgcctga      3000
     gcacaagtta tgtgaagacc attataggaa gactactcag gtattgccat caggtcggtt      3060
     tgaagttagg ctgccgttta aatctgatcc aaatggatta ggcaactcct tcgaggttgc      3120
     aaaacggcgg tttttgtcgc ttgagcgaag gttgtctcga gatcctaact tgaagaccat      3180
     gtacttggaa ttcatggaag aatatctcgc cctaggtcat atgtcgccta cagacaacaa      3240
     aatcccttcc actccacatt atgtcattcc ccatcaatgc gtgttaaggc cccagagtac      3300
     gtcaacaaag ttgcgcgtcg tgttcgatgc gtcctgcaaa acatcgtctc aggtggcctt      3360
     aaacgacatc ctgatggtgg ggccgacaat tcaagaagag ttgtactcca ctctactccg      3420
     cttccggctg cacaggtatg ccctgactgc cgatgtaaaa aagatgtatc gccaagtaat      3480
     ggttaatgaa gcggatagga agtttcaact catagtgtgg aggagagacc cctctgaatc      3540
     cttgagatta tacaagctca acaccgtcac atatggtact ggaccagccc catttctggc      3600
     tattcggtgt ttaaagaggt tgagtgaatc tgctaaatgt tcattcccta gagctgccga      3660
     cgtaattgga tccgattttt acgtcgatga catgttaact ggtgctgcat gcgtagagga      3720
     gctaaagaca attaagtctg aagtgtctca ggttcttcaa acagcaggtt ttgaattgac      3780
     aaagtggttt tcaaactcac ctgaggtcac tgcatctgag agcacagtta agtcgatacc      3840
     tatctcggat tcagagtcaa ctaaggcgtt aggaatatcg tggttgccta gcgaagatgc      3900
     cttcaagttc aaaattgaca cttctgtcat gggtctccga gcgacaaaac ggaacatact      3960
     atcggtgaca tcgaagctgt ttgaccccct cggcttgtta agtcccattg tgattaaagg      4020
     aaagatccta ttgcaggaac tctggcttaa taagttagat tgggatgagt caattccgat      4080
     gcatttggaa acagcttggg atatgctaaa aagcactctg tctcaactgg atgagatatc      4140
     gattcctcgg ttcgtgcata ccgacccatt gtcaccggta cagctacatg cctttgccga      4200
     cgcctccatg agagcttatg gagcttgcgt ctatattcgt agcaaaactg ccgaaggttt      4260
     taaattatcg ttgttgactt caaagtcaaa agtagcgccg ctcaagacca aaacgctccc      4320
     aaggcttgag ttatgtgccg ctcaccttct cgcagatctc tgccatagaa tcaaaccctt      4380
     attaaaagtc cctatcgaac gaattgtata ctggtcggac tctgaagtta ctcttcactg      4440
     gattcgatct catccatctt cgttgtcgac attcgtttcg aacagggtag cggagattca      4500
     agaatggtca ggagaagcta catggcggca tgttcccaca aagcagaacc cagcagatat      4560
     cgtttcgaga ggttgtgacg tcgacgagat agggcagtcg atctggttca ctggcccacc      4620
     atttctgaag gacgaagaag aaaactggcc caaaaatgcg catttcgagc cggatgagga      4680
     agtcttgcgt caggaagcta ggaagactgt ggtcgggctg accgctgctg tgcaaacttc      4740
     cgatttgctg gatgtcatcg aggggttttc gtcacacctc aaactgctta gagtgttcgc      4800
     ttatatgttc cgctttataa gaaaatgcaa agacaagagt atagttttcg aagaaactct      4860
     gtcaccgact gaatataatg aagcgtttca taagattatc gaaatagtac aaaagcacga      4920
     gtatcaagta gaaattgaaa aggttcgtaa aggctccaag gtcggcccaa gtcttcagcg      4980
     attgaaccca ttcatccatg aggatacagg cacttggtgc aacttttcgt tgttgcgagt      5040
     tggggggcga ctagctaacg ctcctatatc atatgatgcc aagtttccct tgctgttgac      5100
     gaaacgctcg cagtttgtgc agagctacgt ccggcatttg caccattcca attttcatgt      5160
     cggccctcga gcacttgtga gcatcctacg acagcgtatt tggaccgtaa acgctcagga      5220
     actctgcagt cagacagttc gatcatgtgt gcgctgcttc aaatgcaagc ctcgactgat      5280
     gacacaaatt atgggaaatc tacccgcaga tagactccgt gctctccgcc catttgcgat      5340
     atgtggcgtt gatttttgtg gccctgtcta tacgacatta aaaattcgag gaaggccccc      5400
     gtataagtcc tacgttgcct tatttgtttg ttttgcgtcc aaggcggttc acttagagat      5460
     tgtctcagat ctaagtactg attcttttct attggctttt caaagattca ttggtcgacg      5520
     aggatgtccg cagacggtgc attgcgacaa cgcgacgaac ttcgtcggag cgagtcgcca      5580
     cttcctggct cttcgcgatc ggatcgagga gcaggcggac gcaattcgcg agttcgcatc      5640
     aaaaagcgga tgcgaatttg cgttcacacc ccctcgggct ccgcacatgg gcggactatg      5700
     ggaggcaggt gtgaaaactg caaagcacct actcctacga gcggtgggca gcgcactcct      5760
     caacgccgaa gagctggcaa cagtcctcgt cgggatcgag gccacgatga actcgcggcc      5820
     cctcggagcg ctcagccagg acccaagcga cggagaggcg ctaactcccg ggcacctgct      5880
     gacaggcggg ccgctcatcg cagcaccagc actccggacc ccggaccagg cgggtctcag      5940
     ttgcttgcgg cgatggcggc ttgtctcgtc agtcaggcaa acgttctggc ggcgatggtc      6000
     ccgggaatat gtcctgggcc ttcaggttcg gggcaagtgg cacgaggaga aggccaacgt      6060
     cgaggagggc caactcgtcg tcgtggcaga ggacaacctg ctgcctcaac agtggctcct      6120
     gggaaggatc gtcgcgacgc acgcaggaga ggacggcaag gtcagggtcg tcgaccttag      6180
     gaggagtgat ggagccatct tccggagggc gatccacaag ctggcgccgc tgccgatttg      6240
     ttgaagccgt ggaggcgttc aacggggccg g                                     6271
//
ID   BEL-3_DYa-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   07-APR-2011 (Rel. 17.09, Created)
DT   07-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_DYa_;
KW   BEL-3_DYa-I; BEL-3_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1780-1780 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 331 BP; 97 A; 55 C; 65 G; 113 T; 1 other;
     tgttggcgga actcatattg tcggtcattg tttattgttt gttgtttatt gttggcatgt        60
     gaagtagaaa aaatttgaag tctagtgtaa gttagtttag ggcgaaggcg ggagcataat       120
     aaagttctct ctcgctcttt gcgaattcgc cccgtcttcg ccaacctctg ttaagctagg       180
     cctaagaaca catatgttaa atagagatga agtcgaaaaa ttgaattcaa cacgagcaca       240
     cgcatttttt tcgttgtcgt agttccgagn ttaaactaat tattcttgcc accaaagtta       300
     aatattttta ataaactaat taaaatcttc a                                      331
//
ID   BEL-3_FoCa-I repbase;    DNA;    INV; 5973 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5973
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2584-2584 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           564..5885
FT                 /product="BEL-3_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 and ribonuclease H."
FT                 /translation="MDRLKKARTPVRASITKTIDGAVAELAKDPKDTMELT
FT                 IRLRKLQSLQTTIREHDEKVLTQMLDDNCTAEAYTEESAANEEYSDKISAA
FT                 ILKIEKVLDAEIRPLSPSPASSYTTANGERVRRNRTFKLPKIQLQKFSGDT
FT                 KEWLGWWSQFRKIDEDDELHASDKFQYLLQSTVSGSRARGLVESFPMTTEN
FT                 YPKAVIALKERFGKEKFLQQVYVRELLRLVITTAKSKEVVVLSKLYDDIET
FT                 QLRALESLGIKAEQSTQFLFPMVESCLPEEILLVWQRSPLRKQDGSQLNPK
FT                 KNELDFLMEFLREEVEGEENRKLVRSGFDAAIKGKEKNKKKGQLEKNEEFP
FT                 TAAGLYSGQQVEQCVFCGKSNHKSQKCFKAQKMPLEEKKILVKENKGCFIC
FT                 LGRGHIAKKCKASVSCRVCKSNHHEVMCSQVEKDDQQDNSYTFISTDAAQT
FT                 NIQCQSDVLLKTVLVKVGCQEKKEDRVVRLLFDEGSQRSYITYSTAKAIRS
FT                 KPMGSEFSRNVLFDGSVTDVGQVYKHQILLRSLYGRNQVKVVLREKPIIGG
FT                 IVPRVQNGPWIQELKARGILLSDYSRHQVAEPDIQILIGSDLWGSIMTGRM
FT                 IKLRCGLVACESVFGWSLSGPVPKFNSVLNESISMFTTEENVQEMWTLEAL
FT                 GIKDPIEVKSKLDQELIAKKHFAETVSRQADGRYSVGLPWIGEEKNIPNNR
FT                 MVAENRLQSTTRRLLSTGKFDVYGNIFKSWKEEGIVEEVNVYHLDDLNCHY
FT                 LPHHPVFKESVTTPVRPVFDASCKTKRYPSLNDCLHKGPNLMELIPSVLLR
FT                 FREKKIGVVSDVRKAFQMIDVQESDRDYLRFLWWEDPAGKKIKIYRHCRVV
FT                 FGVNCSPFLLAAVVDMHLSSIVDGRQEEALKLMGALYVDNCVTSVDSVDEY
FT                 ETFKVTSTKIMEEAKMELRQWECSVVGVPGVGSPAMRGCGLGDGNTDTPQE
FT                 SRILPTTMVLGLIWDKYEDTLSCDIKMDNLPDKFTKRSVLSMVHKVYDPIG
FT                 FSCPALIKPKMLLQKAWERKTGWDEPLPMEEAKEFKKWCEELPHLKSIHLP
FT                 RFMKLESTRVLQMHVFCDASQDAYAAVVFLRSEVGDQVEISLLQAKARVAP
FT                 LKKPTIPRLELMAALIGVRLCESVKSALNYETIPTTYWSDSTTVLAWIRGN
FT                 DNWGTFVGNRVREICTYTDSKKWRHVPGLLNPADLPSRGCNARELLQSGWW
FT                 MGPDWLKESEETWPHSDEVMDEEEINQEMKKSSSVDLAGTTAVEIIPDPRF
FT                 STYVKNVAVVGWQRRFVENTRVPKEDRIMKNYLTVQELREAEIVLLREIQA
FT                 SFVDKFQTGGGVKVQKMEDGLLHVKTRLLNRIDSEEFKMPILLPKSHPMVL
FT                 QLIRDAHRNYCHAGVQFIMGKLREKYWILQARKTIRSVIHNCSTCRRFESK
FT                 KVEVEEAALPEKRVAATEPFQTTGVDLAGPLYLKDGSKVWIVLFTCAVFRG
FT                 IHVDLITSLSTEAFLESLERFINQCGRPNTIYSDNGTNFVGAVNLFKSLDW
FT                 TKIEKESQVKRIQWILNPPTGAWWGGWWERLIRSIKDLLKRMLGRARLTYD
FT                 QLRTCLSSAAAVINSRPLTTVNEDEDDLIPLTPVMFMRGALTCNFPESMEI
FT                 GSRELQSHYKRTRRLQQDLQARFRKEYLGQLVQKANEKKARQLQVGDVVLV
FT                 GADNKKRFDWPMGRIFELIPGKDGVCRVANVKTSKGTLKRPLQRLYPLEIA
FT                 SPTAAALPISRPSLDSKKKKQVQNKPEVDTIDEEIVTKSGRISKKPIRYSQ
FT                 WNL"
XX
SQ   Sequence 5973 BP; 1800 A; 1117 C; 1571 G; 1485 T; 0 other;
     ttagtggtga cctcgacgtg attgctcgtt gggtcagttt tagttgaaag tggactagtt        60
     atagttggtc agtgagttgt gatcttttga gtgaattagt tgtacgtgca aaagactgtt       120
     ccgtggaaat cctgtgctat tgttgctgtc tggaagagga gcagattgaa ttagtgtacg       180
     tgcaaaaagt gttccgtgga aatcctgggc gattgttgct gtctggacga ggagcagatt       240
     caaaggagag gattcacatc aagccttgcc tcattgagga cccgaccctg agtattcggg       300
     ggctgttcag gtgatacctt tcaagttttt attgttgctg tgaagtagtc cgtgaggaag       360
     gagtgaccga ccagattgaa atcggcgtgt ccgacccgag aggaacttca actttattcg       420
     tctattactc aattactgtc ttgcctcttt tgagggcccc atcctgagcg ttcgggagcc       480
     atagaggtcg gcgttgttgc tgattgagtt gattaacgtg tactgttcta attgtttttg       540
     tttgttgact tcgagatatc aacatggatc gactgaagaa ggcgaggact cctgttcgag       600
     cttcgattac aaagacaatt gatggagcag ttgctgagtt ggcgaaggat ccgaaggata       660
     caatggaact taccatcagg ctcagaaaat tgcaatctct gcagacgacg atcagagaac       720
     atgatgaaaa agtgctcacc cagatgttgg atgataactg tacggcggag gcttatacgg       780
     aagaaagtgc agcgaatgaa gaatattcag acaaaatcag tgcagctatt ttgaaaattg       840
     aaaaggttct tgatgcagaa atccgtccac taagcccaag tcctgccagc agttatacca       900
     cagcgaacgg tgaacgtgta agaagaaata ggacttttaa acttcccaag attcaacttc       960
     agaaattcag cggtgataca aaggaatggc tgggatggtg gtcgcagttt aggaagatcg      1020
     acgaagatga tgaactacat gcaagtgaca aattccagta cctactacag agtacggtat      1080
     ctgggtcaag ggcacgtgga ctggtcgaaa gcttcccaat gacgacagaa aactacccaa      1140
     aggccgtcat cgctttgaag gaaagatttg ggaaagagaa gttccttcag caggtgtatg      1200
     tgagagaact acttcggctg gttatcacaa ccgcaaaatc aaaggaagta gtcgtgctct      1260
     ccaaacttta tgatgacatc gagactcaat taagggcatt ggagtcttta ggaattaagg      1320
     cggagcagtc gacccagttc ctgtttccta tggtggaatc ctgcctccca gaagaaatcc      1380
     tactcgtttg gcaaagaagt cctcttcgca aacaagatgg gtcacagctt aacccgaaga      1440
     aaaatgaatt ggattttcta atggagtttc ttcgagaaga agtggagggc gaggagaata      1500
     gaaagttggt gcgatccggc ttcgatgcag ccatcaaggg aaaagaaaag aacaagaaga      1560
     agggtcaatt ggagaagaat gaagaattcc ccactgctgc cggtctctat tcaggtcaac      1620
     aagttgaaca gtgcgttttt tgtggaaaat ctaaccacaa aagccagaag tgtttcaaag      1680
     cgcagaagat gccactcgag gagaagaaga tcctggttaa agaaaataag ggatgcttca      1740
     tctgcctagg aaggggtcat attgcgaaga agtgtaaagc gtcggtgtca tgtcgtgtgt      1800
     gcaagagtaa tcatcatgaa gtaatgtgtt ctcaagtcga gaaggatgat caacaggaca      1860
     actcgtacac gtttatttcc accgatgcag ctcaaacaaa catccaatgc cagagtgatg      1920
     ttttgttgaa gacagtgcta gtgaaagtcg gctgtcaaga aaagaaagaa gatcgtgttg      1980
     tcaggctgct ttttgacgaa ggaagtcaaa gaagctacat aacctacagc actgcaaaag      2040
     ccatcagaag taagccaatg ggatcagaat tctccagaaa tgtgctgttc gatggttccg      2100
     ttactgatgt tgggcaagtt tataagcatc aaattttgct ccgaagtctg tacggaagaa      2160
     atcaagtcaa agtggttttg agagagaagc caattattgg aggtatagtg cccagagttc      2220
     aaaacggtcc atggattcaa gagttgaaag ccagggggat cttgctctcg gactattctc      2280
     gtcatcaagt cgccgaacca gacatccaaa ttctaatagg aagcgacctg tggggaagca      2340
     tcatgacagg aagaatgatc aagttacgat gtgggctcgt cgcgtgtgaa tcagtttttg      2400
     gatggagtct gagcggtcca gttccaaagt tcaatagtgt gctgaatgaa tcgatctcaa      2460
     tgttcacgac tgaagaaaac gtgcaggaaa tgtggacatt ggaagcactc ggcattaagg      2520
     atccaatcga ggtgaagtcg aagttggatc aagaattaat tgcaaagaag cattttgcag      2580
     agacagtatc tcgtcaagct gatggacgtt attcagtggg cttaccatgg attggtgaag      2640
     agaagaatat tcccaacaat aggatggtgg cagagaatag actccagtca acaacaagga      2700
     gattactaag tacaggaaag tttgacgtat acgggaacat tttcaaatcg tggaaggaag      2760
     agggaatagt ggaggaagta aacgtgtatc atttggatga cttaaactgc cactacttgc      2820
     cccaccatcc cgtgttcaag gaaagtgtga cgaccccggt gcgacctgta tttgatgcct      2880
     cttgcaagac aaaaagatat ccatcattga atgattgtct tcacaaagga cctaatctaa      2940
     tggaactcat cccgtcagtt ttactcagat ttcgggagaa gaagattggg gtcgtctctg      3000
     atgttaggaa ggcgtttcaa atgatagacg tacaggaatc cgacagggat tatttgagat      3060
     tcctgtggtg ggaggaccct gccggaaaga aaattaaaat ttaccgtcac tgtcgagttg      3120
     tgtttggtgt taactgttca cccttcttgc ttgcagcagt cgtcgacatg catctatcat      3180
     caattgtgga tggacgacaa gaagaagccc tgaaactgat gggagcacta tacgtggaca      3240
     attgtgtcac gtcagtcgac agcgtggacg agtatgaaac attcaaagtg acttcaacca      3300
     agattatgga agaagcgaag atggagttga gacagtggga atgtagtgtt gtgggggttc      3360
     ccggagtcgg ctcgcctgcc atgagggggt gcggattggg agacggcaac actgacactc      3420
     cacaggagtc aagaatactc cctacaacaa tggtacttgg tctaatttgg gacaagtatg      3480
     aagatacgct gtcatgtgac ataaagatgg acaatctccc ggataagttt accaagagga      3540
     gcgtgctgtc catggttcat aaagtgtacg atcccatcgg tttcagttgt ccagccttaa      3600
     taaagccgaa gatgttgtta cagaaggcgt gggagaggaa gaccggatgg gacgaaccat      3660
     tacctatgga ggaggcgaag gaattcaaga aatggtgcga ggagctacct cacctaaaat      3720
     caattcacct cccacggttt atgaaattag aaagtacacg tgtattgcag atgcatgtgt      3780
     tttgtgatgc gagtcaagat gcatatgctg ctgtcgtgtt tcttcgcagc gaagttgggg      3840
     atcaagtgga aataagcctc cttcaagcaa aggcaagggt ggctcctttg aagaaaccaa      3900
     caattccaag actcgagtta atggctgcgt taattggggt gcgactttgt gaatctgtca      3960
     agagtgcact caattatgag accatcccca ctacatattg gagcgactca accaccgtgc      4020
     tggcgtggat tcgaggtaac gacaattggg ggacttttgt tggaaacagg gtacgagaaa      4080
     tttgcacgta tacggattct aagaaatgga gacatgttcc gggtcttctc aaccctgctg      4140
     acctaccatc acgaggatgc aatgccagag aattgctaca gtcaggatgg tggatggggc      4200
     ctgattggct caaagaatca gaagaaactt ggcctcactc agatgaagtt atggacgagg      4260
     aggaaattaa ccaagaaatg aagaaatcca gcagtgttga cttggctggt actaccgccg      4320
     tcgagataat tccagatccg agattctcta cctacgtgaa gaatgttgca gtagttggct      4380
     ggcagcgtcg ttttgtggag aatactcgtg taccaaaaga agacaggatc atgaagaatt      4440
     atctgacagt ccaggaatta agagaagctg aaatagtgct gctgagagaa attcaggcta      4500
     gcttcgtgga caaattccag actggtggcg gagtaaaagt tcagaaaatg gaagatggac      4560
     ttttacacgt gaagacaaga ctactgaatc gaattgattc tgaagagttc aagatgccaa      4620
     tattacttcc aaaatcccat ccgatggtgc tacaattgat tcgagatgca catcggaatt      4680
     attgtcatgc tggtgttcag ttcatcatgg ggaagttacg agagaagtat tggatcttgc      4740
     aagctaggaa gacgatcaga agtgtcatcc ataattgttc cacgtgtaga agattcgaat      4800
     caaagaaggt cgaggtggaa gaagctgctc taccagagaa gagggtcgct gcgaccgagc      4860
     catttcagac gacaggtgtt gacctggctg gaccactata ccttaaagat ggatcgaaag      4920
     tgtggatcgt tttgtttacg tgtgcagtgt tcagaggaat acacgtggac ttgatcacct      4980
     ccttgagcac ggaagcattt ttggaatctt tggaaagatt cattaaccaa tgtggacgtc      5040
     ccaatacaat ttatagtgac aatgggacta attttgttgg agccgtcaac ctcttcaagt      5100
     cactggattg gaccaagatc gagaaagaaa gtcaagtgaa gagaatccag tggatcttga      5160
     acccacccac aggagcgtgg tggggcggat ggtgggagcg acttatcaga tcaattaagg      5220
     atcttttaaa gaggatgctg ggacgagcca ggctgaccta tgaccagttg aggacctgtc      5280
     tttcttccgc agcagcagtc atcaatagtc gtccactgac aaccgtgaat gaggatgaag      5340
     atgacctcat tcctttgaca ccagtaatgt tcatgagagg agctttaacg tgtaattttc      5400
     ctgaaagtat ggaaatcgga tcaagagagt tgcagtctca ttacaaaaga acaaggagac      5460
     tacaacaaga ccttcaagca agatttagga aggaatatct cggtcaattg gtccagaaag      5520
     ctaacgagaa gaaagcacga caacttcaag taggagatgt tgtcttagtc ggtgctgata      5580
     acaagaagcg ttttgactgg ccgatggggc gaatttttga gcttattcca gggaaggacg      5640
     gagtgtgcag agttgcgaat gtcaagacgt cgaaaggaac actcaagaga ccactgcaac      5700
     gactctatcc attggaaatc gcttccccta cggcagccgc tttacccatt tcaagaccct      5760
     cactggactc caagaagaag aagcaagtcc agaataaacc ggaagttgat actatcgatg      5820
     aagagatagt gaccaaatca gggaggatct ctaagaaacc aattagatat tcgcagtgga      5880
     atttgtagat tactcgtata gtttaattgg atttaatatt tatgattttt tcttagggta      5940
     gttcttttgc tctcacaaaa gaaagtggga gga                                   5973
//
ID   BEL-3_FoCa-LTR repbase;    DNA;    INV; 483 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-483
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2594-2594 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 483 BP; 139 A; 70 C; 105 G; 168 T; 1 other;
     tgttaaatgt aaaataagtt tatgtatgaa atttattgat tacgcgtcta caattgcccc        60
     stgtcgtggt ggtggttgcc atggagacga cgggggtggg atttttgggt gcgcgtctct       120
     ctttgttaag tcgtagtaag taagtaaggt aggaatagtc aacacagtcg agttttagtc       180
     gttgtcagag tcagacattt tggattttag tcgtcgtggc aggcaatcaa gtttagaatt       240
     gttagttctt ttttgttgcc acgatcaatt tataattaaa gtaagtcatc aatcaactcg       300
     tgttgttgca gagctctgaa ttgtgttgac catcgtttaa ttgatttaaa taaaatctag       360
     tttaagtaga taaaataatc gtataattca ctcagtcact ttctttaatt ccaacgagca       420
     aagcacaatt aaatataacg taaagacact atactccggg taggtgatag cttggttttt       480
     aca                                                                     483
//
ID   BEL-3_LH-I  repbase;    DNA;    INV; 6055 BP.
XX
AC   ADOQ01002208;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_LH_;
KW   BEL-3_LH-LTR; BEL-3_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-6055
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002208; Positions    9794    3740.
XX
CC   Positions [4858-5436] - Integrase core
CC   'ATTAT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4714..5652
FT                 /product="BEL-3_LH-I_1p"
FT                 /translation="MRSYLLRHFWIPGGASRIRQVPRQCVRSVRFRAEVGR
FT                 QRMGQLPPERVQPVRPFLTSGVDYAGPLRVRTTKGRGHSSVKGYICLFICL
FT                 VTKAIHLEVVSDLTTTAFIAAFRRFISRRGRCALLLSDNGTNFRGADAALR
FT                 KMFCSASDFHQEISAYLANDGTSWRFIPPHAPHFGGLWEAGVRSVKHHLRQ
FT                 ILGDHALTYEELSTLLCQIEACLNSRPLSPLSPDPTDLVALTPGHFLVGES
FT                 LSSLSEPAFHDTPSTLINRWHLLSNLRNHFWHRWSKEYLHQLQQANKWQQL
FT                 KANLKVGDLVIVQDELLPPAK"
FT   CDS           join(611..3265,3269..4489)
FT                 /product="BEL-3_LH-I_2p"
FT                 /translation="MDTLIRQQMSLSGYIARMWTNLQKLGQARITELEIKT
FT                 RLERLDDYWRQFQSTHFQLLQYDELSQHEYSTRDIFTISEENYFLVRNKFL
FT                 TALLPMQSRERANDASPTAASPLIRQMQLPKLNLPKFSGEQLGWESFRDLF
FT                 RSLVHEVSDIPPVQKLQYLRGCLAGEAEEIAANLPLTDAAYQGAWNDLVAR
FT                 YDNQRILLFVHMRNVLSCPNVAKSSPSEIKRLLATVNQSIRAFTSLKRPVD
FT                 QWDDWLVHLLVSKLDSHTRLHWETSLADSRAFPTFKQLQEFLENRIRALEA
FT                 ANPEASLARTTSTPSPKTTKGSRVSANMASTAKPKGKSKCLLCQDAHALPY
FT                 CARFKAMTVVQRSEQAKKLGACLNCLRGGHHADACPSTGRCLVCAGKHHTA
FT                 LHGFQPQPVGVSGVVNMNGSPASTAKALNMSVSTYVSRPAGVTLLATAQII
FT                 LQSDAGQSIKVKALLDPGSEATFVSERAAQQLRARRKRVHVTVAGLQGIQT
FT                 GTVTSSIGVGVRSPVNPTVHIKTEALVLRNLTNLLPAKQVLLPSGMHLFGL
FT                 TLADPLFNVPAKVDAILGADIYDRILEPDIRRGDPGTPTALRTAFGWVLTG
FT                 TVQANEQGTVASHRLSVHHALSTDDISRALQRFWEIEEIPSQQPQDPDETK
FT                 AEQHFRATHARDLTGRYVVRLPRKEDKAVRLGASRPAALSMLLSSERRLSK
FT                 QPDLHKRYTDFMVEYLALGHMNPVGPEKSVARDSYYLPHHAVFKAGDPAGK
FT                 IRVVFNASCRTTSGYSLNDCLLPGPRLQADLWLILSKWRLFRIGFMADIVK
FT                 MFRQIQVHPEDANLQRILWRATPSEEVRDYYLTTVTYGATSAPFLALRTLR
FT                 QLAQDESERFPLGAAILTRHSYVDDILAGGDSDQTSLVKKQLVSLLQAGGF
FT                 SLSRWASNWNELCPRMETDERLLTANDSVGALGVRWDPQTDTLALKVALMS
FT                 ERSFPEALTKRSALSEAARLFDPLGWAAPVLIFAKVFLQDLWLRGCKWDDP
FT                 LATELASGWEQFRASLHQLNEVRIPRWVHFGSDTVTTELHGFSDASERAYA
FT                 AVIYLRIARSDGNSAAHLLVARTRVAPVKTQSIPRLELCGAVLLARLLTRV
FT                 AKELEIPPTSVFAWTDARVVLCWISSHASRWKPFVAHRIAEIQGLLPSERW
FT                 NHVRTTSNPADLATRGVSPSDILNRDLWWHGPDWLGKPRKSWPETEATNFV
FT                 NVPEDEQRTKLTAVHLAQASPTEEILERFSSLIRLLRITAYCFRFFHNLRN
FT                 PLVVARSPPTSCSLVGHSGFAGANSETMTTR"
XX
SQ   Sequence 6055 BP; 1272 A; 1783 C; 1635 G; 1365 T; 0 other;
     atttggtcct tcgagccgga tacatactac tgtcgattga gttttgcggc gtacgcccac        60
     ggaaagttcg gaaacgttaa taactctcgt ggtatctcgc cacgtggcgt gccgtgccac       120
     ggcacttccg gcgagaccgc gcgcgcacca ttaaatttcc gcgctccgaa atctgtgagt       180
     gagtgcagtg gattctcata acaagactct ctcatccttg gcccgataca gtggaggagc       240
     gatcccgcct ccagggaaaa ggaggagtaa tttagcaagt gcgtaaggag cacgcagtgt       300
     tctctttctc ccgcaacgga aggaccagcg tcaacccgga tcggcgcgcg ccgtctgttc       360
     gctgcgacga gacgcgtgct cgcgctctgt tgcacgctct atacctgtgc tttcggtcgc       420
     acttgagcac gctcgctcga acgcacgtgc tcgctgcgtg ttcgccagct ggtaggtacc       480
     tcacgttgct ccttttttct atctctatct ctctcgctcc ccgagtgctc gcttctgtcg       540
     tgctgcttaa actctgtctt atttctcgtg acgagacatt tcgcaaaatc gagttcaata       600
     actatctaga atggacacgt tgatacggca acagatgtca ttatcgggtt acattgcccg       660
     tatgtggacg aatctgcaga aactcgggca ggctcggatt accgagcttg agattaaaac       720
     gcgcctggag cgactcgacg attattggcg gcagtttcag agtacacatt ttcaacttct       780
     ccaatatgac gaacttagcc aacacgagta cagcaccaga gatattttta caatctccga       840
     ggagaattat tttcttgtac gaaacaagtt tctcacggct ttgctcccaa tgcagtcgag       900
     ggaaagagcg aacgatgcgt ctccaacggc cgcgtccccc ctcatcaggc aaatgcaatt       960
     gccaaagctc aatttgccca aattttccgg cgagcagctt ggttgggaga gcttccggga      1020
     tctattccgc tcgctggtgc acgaggtatc cgacattccc cccgtgcaaa aactgcaata      1080
     cctgagaggt tgcctggctg gtgaggcgga ggagattgcc gcgaacctgc cgctgaccga      1140
     tgctgcgtat cagggcgcgt ggaatgacct tgtcgcacgg tacgacaacc aacgaatcct      1200
     actcttcgtg cacatgcgca acgtgctctc ctgtccgaat gtcgcaaagt catcgccgtc      1260
     agagatcaag cgcttactcg ccaccgtaaa ccagtcgatc cgggccttca catccttgaa      1320
     acgtccggtc gaccagtggg atgactggtt ggtacatcta ctggtcagca aattggattc      1380
     tcacacgcgt ctgcactggg agacatctct agcggattcg cgggcgttcc ccacgtttaa      1440
     gcagttacag gaattcctgg aaaatcgcat tcgggcattg gaggcggcca atcccgaagc      1500
     ttctctagcg cgtaccacct ccacgcccag tccaaaaacc acgaagggct ctagggtatc      1560
     cgctaacatg gcttcaacgg cgaagccaaa agggaagagt aaatgccttc tctgccaaga      1620
     cgctcacgcg ttaccgtact gcgcaaggtt caaggccatg acggttgtgc agcggagcga      1680
     acaagcgaag aaattaggcg cgtgccttaa ttgtctgcgc gggggacatc acgccgatgc      1740
     ctgcccgtcg accggtcgtt gcctggtgtg cgccggcaag catcacaccg cgcttcacgg      1800
     gttccagcct caacccgtcg gggtgtcggg ggttgtgaat atgaacggtt cccccgcctc      1860
     cacagccaag gcgctcaaca tgagcgtgtc cacttacgta tcccgtccgg ctggagtaac      1920
     ccttctcgcg acagctcaga tcatcttgca gagcgacgcg ggacagtcga tcaaggtcaa      1980
     agctcttttg gaccccggat ctgaggctac gttcgtctca gaacgagcag cccaacaatt      2040
     gcgcgcgagg cggaagcgcg tccacgtgac agtcgcgggc cttcagggta ttcagacggg      2100
     caccgtcact tcgtccatcg gagtgggagt acgttctccg gtcaacccca cggtgcacat      2160
     caaaaccgag gcactcgtcc tcagaaatct aaccaattta ttacctgcga aacaagtgct      2220
     actcccctcg ggtatgcatc tatttggatt gaccttggcc gacccgttgt tcaacgtacc      2280
     cgcaaaggtg gatgcgattt tgggcgcaga catctatgat cgaatcctgg agcctgatat      2340
     tcgtcgcgga gatccgggta cgccgacggc cttgcgcacc gcgttcggct gggtgctcac      2400
     cgggaccgtg caggcgaacg aacaagggac ggtggcttcc caccgtctct ccgtgcatca      2460
     tgccctgtcg acggacgata tctcaagggc tcttcaacga ttctgggaga tagaggagat      2520
     cccatctcaa cagcctcaag accccgatga aaccaaagcc gaacagcatt tccgtgcgac      2580
     ccatgcacga gacctcacgg gtcgatacgt ggttcgcctc ccacggaagg aggacaaggc      2640
     tgtgcgactt ggggcctctc gacccgctgc actttccatg ctgctgagtt ctgaacgccg      2700
     gctgagtaag cagccggacc tacacaaacg ctataccgac tttatggttg aatacctggc      2760
     cctaggccat atgaatccgg tcggtcccga gaagtcagtt gcgcgggact cgtattatct      2820
     accgcatcac gccgtgttca aggcggggga tcccgccggc aaaatacgag tagtctttaa      2880
     cgcgtcctgt cgcaccactt ctggatactc tttaaacgat tgtcttttac caggtccaag      2940
     gttgcaggcg gatctgtggc tgatactctc caagtggcgg ctgtttcgga tcgggtttat      3000
     ggccgatatt gtcaagatgt tcaggcagat ccaggtacat cctgaagatg cgaacctaca      3060
     gcgcatcctg tggcgtgcga ctccgtccga agaggtgcgt gattattacc tcaccaccgt      3120
     cacgtacgga gcaacgtcgg cccccttttt ggcgctgaga acgctacgtc agctggcgca      3180
     ggacgaatcg gagcgctttc cgctgggagc ggccatcctc acccgccact cctacgtgga      3240
     tgacattcta gccggtggtg attcttagga ccagacgagc ttggttaaga aacaactcgt      3300
     ttccttactg caggcgggag gcttctccct cagcaggtgg gcctccaatt ggaacgagct      3360
     gtgtccacga atggagacgg atgagcgcct cctgaccgca aacgactcgg ttggagccct      3420
     cggcgtacgc tgggatccgc aaacagatac cctggcattg aaggtggctt taatgtccga      3480
     gcgttccttc cccgaggctc tcaccaaacg aagtgcgctt tcggaggcgg ccagactttt      3540
     tgacccgctg ggctgggccg cgccggtgct tatcttcgcc aaggtcttcc tgcaggattt      3600
     atggctgcga ggatgcaaat gggacgaccc tctggccaca gagttggcta gcggctggga      3660
     acaatttcgg gcttccctac accaactcaa cgaggtgcgg atccctcgat gggtccactt      3720
     cgggtccgac acggtcacga ccgaactgca tggcttctcg gatgcttccg agagagctta      3780
     tgctgcagta atttatttac gaattgcaag gtcggatggg aactcggctg cacacctgtt      3840
     ggtcgctcga actcgcgtgg ctccggtgaa aacgcaaagt ataccgcgtc tcgaattatg      3900
     cggagcggtg ctcttagcga gactcttgac ccgagtggcc aaggagctcg aaataccacc      3960
     tacctccgtc ttcgcgtgga cagacgctcg ggtggtgctc tgttggataa gttcccacgc      4020
     ctcccggtgg aaaccttttg ttgcccatcg gattgcggag atccagggtc ttctacccag      4080
     tgaacgctgg aatcatgtta ggacgacctc caatccagcg gatctggcca ctcgaggcgt      4140
     ctccccctcg gacatcctaa accgagacct ttggtggcat ggaccggact ggctcggcaa      4200
     accgcgcaag agttggccgg aaacggaggc aacaaacttc gtcaacgttc ctgaagacga      4260
     gcaaaggacg aagcttactg cggttcacct ggctcaagct tccccgactg aggagatctt      4320
     agagaggttc tcctcgctca ttcgcctact gagaattacc gcttattgtt tcaggttctt      4380
     ccataacctt aggaacccgc tcgtcgtggc gcgctcacct ccgacgagtt gctccttagt      4440
     aggacattct ggattcgctg gagccaacag cgagactatg acgacgagat aacggcgcta      4500
     cgaggcggac ggcccatctc tgtccggtcg accctcaggc gtctcctccc gttcctagac      4560
     gattccggcc tcctgcgcgt cggggggcga atacaggcgg ccgcattgcc gtatgctgaa      4620
     tgacatccgc ttgtcttgcc gaaagcgggt catttcaccc tattactgat ccgtcatgcg      4680
     catgcggcca ctctccacgg aggaccacaa ttaatgcgga gttacctgct gcgacatttt      4740
     tggataccag gtggtgcgtc tcgcatccgc caggttcccc ggcagtgtgt tcgcagcgtt      4800
     cgtttcaggg ctgaggtcgg tcgacagcga atgggtcaac taccaccgga gcgagtgcag      4860
     ccagttcggc cctttcttac ctccggtgtc gattatgccg gccccttgcg agttcgaacg      4920
     accaaaggac gcggtcactc ttcggttaaa ggctacatat gcctcttcat ctgtctcgtc      4980
     accaaggcga tacacttgga ggtggtctca gacctgacca cgacggcctt catcgctgca      5040
     tttcgccgct tcattagccg acgaggccgc tgcgccttac tcctgagcga caatggcacc      5100
     aatttccgcg gtgctgatgc cgcgttgcga aagatgtttt gctcggcctc tgacttccac      5160
     caggagatca gcgcatactt ggccaatgac ggcacgtcct ggcgattcat tccacctcac      5220
     gcccctcact tcggcggact gtgggaagcc ggtgtgcgat cggtcaaaca tcatctgagg      5280
     caaatattgg gggaccacgc tctcacatac gaggagttgt ccacactact ctgtcagatt      5340
     gaggcgtgcc ttaattcacg accgctcagt ccactcagcc cggaccctac ggatctcgtg      5400
     gcgctcacgc ctggccactt cctcgtggga gaatccttat ccagcctttc tgaaccggcc      5460
     ttccacgata cgccctctac cttaataaac cgttggcatc tactctcgaa cttacgcaac      5520
     catttctggc acaggtggtc caaggaatac ctccaccagc tacaacaagc caataagtgg      5580
     caacaattaa aggccaacct taaggtgggg gatctggtca tcgttcagga tgagctgcta      5640
     cccccggcga agtagccgtt aggacgcgtc gtcacggtga gcccgggacc ggacggactt      5700
     gtacgagtgg tgggcgtgag gaccgccaga gccgtcctaa ctcgaccaat aacccgccta      5760
     tgtcgtttgc cggtggacgc cgctacggtc caggcctgat ccacgggtcc ccgccgagat      5820
     caaagcgaga cctctctcgc ccctcgcttc aaagaaacat ttgcttcgtg ttcttcctct      5880
     gttcgtttgg taagtccgag cgggttgccg gcgtcgtttt gcgtgtaacc atccagttgc      5940
     aaactttaga taaggtgtta tccatcccga attccgcatg gcgggattta ccaaggcggt      6000
     tctttaccaa ggcccttggt tctcctattt cgtctactgg acgaggcgag cggta           6055
//
ID   BEL-3_LH-LTR repbase;    DNA;    INV; 501 BP.
XX
AC   ADOQ01002208;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_LH_;
KW   BEL-3_LH-I; BEL-3_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-501
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002208; Positions    3739    3239.
XX
SQ   Sequence 501 BP; 106 A; 127 C; 153 G; 115 T; 0 other;
     tgtttacact tcgcgcctgc attgcgcgtc accgagcttc cggaaccttc tgtgggcctt        60
     ccggtgcttt gcgaaacctg cgcgaggcgt ctgagggacg tcttcctccg gaccgacgca       120
     cgcgctccgg cggattgagg agctgggcga cgggggtcgg ggccggaaga aagacctcct       180
     gttcgcgaga ggcgggaggg aagctcgcac tctttttcgc gaacgttaac ccgtcttagc       240
     acgcgcggta cgaacgttac acgggagctg tcccgcgtgt agttggtcac cggaattagt       300
     atctattgcg atacagcggg tgtgaattgt aaggcttgta tttgttacac aacgccggac       360
     tcaataaaac agtgttaaag acaatacgag agttattttt attcgttttt ctggacggcc       420
     gagagactgc aggcgggcaa actgttctaa gtatcgcgaa ggtactccaa gtcccgtcgg       480
     gaccgagtcg aatagcgaac a                                                 501
//
ID   BEL-3_MoPha-I repbase;    DNA;    INV; 5620 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5620
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1130-1130 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..5328
FT                 /product="BEL-3_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSLTASQALSSQGVRQHSIERALDNFKKLGRNNLTAA
FT                 KIRSRATSLKEIWRSYQEGHSTLMQIVPVASQSTIEYFSKAQYDQTEEVYN
FT                 TTLDYMMDCLEDIEPVVSHHNQSLEAGPAVHDATSLSLVHLPPINLPPFDG
FT                 NYADWETFRDRFTSLIINNKDLNDFGRMHFLVSSLKGRAKERLATLAVTAN
FT                 NFKLAWQTLTARYESKRRLLSFHLSALLDLPNVSRESASELQLLCDKINIA
FT                 ITSLQKLDRTPSDLWDDFLVFLTSQKLDSATRKAWTLHTTHADAPSTYEAL
FT                 SRFVASRISALEECSPDSNSKSASKSAASSRVHLATSDNATLTCPLCKSRH
FT                 FINLCPQFIAKNANQRRELVKRFKRCVNCLSSRHSASDCTSKYTCRLCSKK
FT                 HHTMLHIDAEANSDAATSTSQHAKVSSDAAPAVEVNSLLSSAQPRTNVQIL
FT                 LATAWVTVRVASGRSVSVRALLDQGSEATFISGNVAQLLRAKRIRMPVSIS
FT                 AVGGTHVGTVQHAAAIIISPRASTTPAFETTALVLNSLTSYAPKFVSDLSG
FT                 FPHLAGLSWADAKPTSSDPIQLIIGADLYSDVILEGVRKGQSGQPVAQNSV
FT                 FGWIISGPLAPTIDSSRASVVHSPPHQYSAHLTVHNCLLGQSLAEEIRKFW
FT                 EIEELPQSQTLTPQDESCEAHFRDTHSRREDGRYIVRLPFKRGPPIDIGRS
FT                 RAVAERLYHSLLRRFRLHPELEQEYDQFMREYEQLGHMHGASLSQDASHQS
FT                 VHIPHHPVFREGSATTHLRVVFNASSVTSNGLSLNDCLYAGPKLQTDLPAI
FT                 ILQWRHFKLVYMADIAKMYRQILVDRRDIDYQRIVWRGANDQPSDYQLLTV
FT                 TYGMTCAPFLALRVLRSLIDDDGHRFPLAIPILRNQIYVDDVLFGGDDQSG
FT                 VRESRDQLVDLLRCGGFELRKWASNSPALLSDVDPSDHGLACDRHIATDEK
FT                 VKVLGIVWNPARDVFQVRVSLSESVPRCKRAILSTIAKLYDPLGWVTPVTV
FT                 SAKICMQQLWRLNATWDEDIPETLFRQWHSIYSRFSSLNDLNIARWTGVQS
FT                 NVSHIELHGFADASTLAYAAAVYLKVVSASGAVTLSLLAGKSKVAPIAPLT
FT                 VPRLELSAALLLVRLVNFVSGSLAIQSVPCFCWTDSTIVLTWLRAHPSRWK
FT                 TFVANRVSAIQTQLPDAEWRHVPTSDNPADCASRGLFGDELVHHALWWRGP
FT                 PWLQASREDWPREPASPVVDARAEEKLVSLNVTSPPARWDLATRYSSWLKL
FT                 IRITAYLFKFINACRRRSVDSSSLISSLHTPSLLECKSAKTFWLKSIQSEL
FT                 FSVEIRALTAGKTVPTRSSLAALTPFLDCDGILRVGGRLRHAPLPYKTRHP
FT                 VLLASHPLVNLIALQAHLRVLHGGLQLTLNTLRHEYWIVRARSLVKAVIHN
FT                 CTVCCRERAAIPVQLMGDLPKARVSTPSRPFSHCGVDYAGPVQTRASAGRG
FT                 ITSRKAYIAVFICLATRAIHLELVGDYSTPSFLNAYLRFCSRRGLPSAMYS
FT                 DNGTTFVGADRELHSAYQHALRDPDFQSKTACDNVSWHFIPPSAPHFGGLW
FT                 EAGVRSMKHHLHRILDRTTLSFEEFTTLLCRIEACLNSRPIAPLSDSFDDY
FT                 ESLTPGHFLIGSALNVPPEPSLLQLNENRLSRWQLIRHLSERFWKLWATDY
FT                 VNTLQQRSKWRKIHPNLKIGKIVLLRDATLPPCKWKLGRVTQLHPGADDIT
FT                 RVVTVKTATSEFKRPIGQLCLLPVEDVTSSD"
XX
SQ   Sequence 5620 BP; 1187 A; 1603 C; 1382 G; 1448 T; 0 other;
     tttgttggtc cttcgagccg gatcgcgaga gcgtgtggag ggactacatt cgtcttcatt        60
     tcggtgcatc gcatcatgtc tctcacagca tctcaagcgt tatcgagtca aggggtgcga       120
     cagcactcta ttgaacgagc tcttgataac tttaagaagc tcggtcgaaa caatttgacg       180
     gcggcgaaaa ttcggtcgcg cgccacgtct ctcaaggaaa tctggcgttc ataccaggaa       240
     ggtcactcca cgttaatgca gatagttcct gtcgcctccc agtctacaat agagtatttc       300
     agcaaggctc aatacgacca gaccgaagaa gtgtacaaca cgacgttgga ttatatgatg       360
     gactgtctgg aggatatcga gccagtagtg agtcaccaca atcagtctct cgaggctgga       420
     cctgccgttc atgacgcgac ttcgctctca ttagtgcatt tgccgcctat aaatctgccg       480
     ccgttcgacg ggaactatgc ggattgggaa acattccgcg atcgctttac ttccttaatc       540
     attaataata aagacttgaa tgatttcgga cgcatgcatt ttctcgtgtc gtcgttaaaa       600
     ggccgtgcta aagaacgtct cgcgactctc gcggttaccg ctaacaactt taagcttgcg       660
     tggcaaacat taaccgcgcg gtacgagagt aaacgacgat tactctcgtt tcatttatcc       720
     gcgctgctcg atttgcccaa tgtgagtcgg gaatccgcca gcgaattaca acttttatgc       780
     gacaaaatta atatagcgat tacctcactg cagaaactcg atcgcactcc gagcgatctt       840
     tgggacgact ttctcgtatt tctgacgtca caaaagttag attcggccac tcgtaaagcg       900
     tggacacttc ataccactca cgccgacgcg ccgtcgacgt acgaagcatt aagtcgtttt       960
     gtcgcctctc gcatcagcgc actggaagaa tgctctcctg atagcaactc aaaatccgcc      1020
     tctaagtctg cggcttcgtc gcgcgtccac cttgctacgt ccgataacgc aacgctaact      1080
     tgtccgctgt gcaagtcccg tcactttatt aatttatgtc cgcaattcat cgcgaaaaat      1140
     gcgaatcaac ggcgggaact cgtcaagcga ttcaagcgct gcgtcaactg ccttagcagt      1200
     cgtcactccg cgtccgattg tacaagtaaa tatacctgtc gtctgtgctc taagaaacat      1260
     catacgatgt tgcacatcga tgcggaagcg aattctgatg cggcgacgag cacctcacaa      1320
     catgcgaagg tgtcgtccga cgcggcgccc gcagtcgaag tgaattcatt gctctcctca      1380
     gcgcaaccgc gcactaatgt tcaaatactt ttagcgaccg catgggtcac tgtcagggtc      1440
     gcttccggtc gatctgtatc cgtcagagct ttgctcgatc agggctctga agccacgttc      1500
     atcagcggga acgtggctca attgctgcgc gcgaaacgca tccgaatgcc ggtttccatc      1560
     tctgccgtcg gcgggactca tgtcggcacg gtgcaacacg ccgccgcgat cattatatct      1620
     cctcgtgcgt cgactacgcc ggctttcgaa acgacggcgc ttgtcctcaa ctcgcttacg      1680
     tcgtacgctc cgaaattcgt ctcggacttg tccggctttc cgcatctcgc cggcttgtca      1740
     tgggcggatg ctaaaccgac tagctccgac ccgattcaac tcattatcgg cgccgatctt      1800
     tacagcgacg taatcttgga gggcgttcga aaggggcaaa gcggacagcc cgtcgctcaa      1860
     aattccgtat tcggctggat tatctccggt cctctcgcgc cgacgatcga ctcgtcgcga      1920
     gcttccgtcg ttcactcgcc gcctcatcaa tactccgctc acctcacagt acacaactgc      1980
     ttgctcggtc agtctctcgc cgaggaaatc cggaagttct gggaaatcga ggagctccct      2040
     cagtctcaga ctctaacgcc gcaagatgag tcatgcgagg ctcacttccg cgacactcat      2100
     tcgcgtcggg aggacggccg atatatcgtg cgattaccct ttaaaagggg cccgccaatc      2160
     gacatcggtc gctcgcgggc tgttgccgag cgattatatc attcgctatt acgccgtttc      2220
     cgcctgcatc cggagttgga acaagaatac gaccaattta tgcgtgaata tgaacagctc      2280
     gggcacatgc acggggcatc gctctcgcaa gacgcctctc atcaatctgt tcatattccg      2340
     catcacccgg tgttccgcga aggaagtgcg acgacgcact tacgcgtcgt gttcaacgcg      2400
     tcgagcgtca cgtcaaacgg gttatcgttg aacgattgct tgtacgcggg tccgaaattg      2460
     cagacggatt tgcccgcgat tattctgcaa tggcgccatt tcaagctcgt ttacatggct      2520
     gatatcgcga aaatgtatcg ccaaattttg gtcgatcggc gagatataga ctaccagcgt      2580
     attgtctgga ggggtgctaa cgatcagcct agcgattatc agttgctcac cgtcacctac      2640
     ggtatgacat gtgcgccgtt cctagcactt cgcgtcctcc gcagtcttat cgacgacgac      2700
     gggcaccgtt ttccgttggc catccccatt ctgcgcaatc aaatttacgt cgacgacgtt      2760
     ctattcgggg gtgatgacca atccggcgtc cgagaatctc gcgaccaact cgtcgactta      2820
     ctacgctgcg gtggattcga gttgcgaaaa tgggcgagca actcgccggc attgctcagc      2880
     gacgtcgatc cgtcggatca cggactcgct tgcgaccgac atattgcgac cgatgagaaa      2940
     gtaaaggttc taggcatcgt atggaatccg gcgcgtgatg tctttcaagt tagagtctct      3000
     ctctccgaat cagttcctcg gtgcaaacga gcaattttgt caacaatcgc aaagctatac      3060
     gatcccctgg ggtgggtgac tcccgtcacc gtctcagcta agatctgtat gcagcaactt      3120
     tggcgtctta atgcgacctg ggacgaagac attcctgaga ctcttttccg tcaatggcat      3180
     tccatctatt ctcggttttc ctcactaaac gatctcaata tcgcgcggtg gacaggagtc      3240
     caatcaaacg tctcgcatat cgagcttcac ggcttcgccg atgcctccac cctcgcctac      3300
     gcggcagccg tctatctgaa ggttgtctcc gcctcaggtg cagtgacgct ctcgttgctc      3360
     gccggtaagt cgaaggttgc tcccattgcg cctcttaccg tccctcgcct ggaactgtcc      3420
     gcggctctct tgctcgtccg tctcgtaaac tttgtatctg gttcgctcgc gattcaatct      3480
     gttccgtgtt tctgttggac ggattcaacc atcgtgctta cgtggttgcg cgcccatcca      3540
     tcacgatgga aaacattcgt cgccaaccgc gtcagcgcga ttcaaactca gttaccggac      3600
     gctgagtggc gtcacgtgcc gacctctgat aatcccgcgg attgcgcatc gcggggcttg      3660
     ttcggtgacg aattggttca tcatgctctg tggtggcggg gaccaccttg gttgcaagcc      3720
     tcacgggagg attggcctcg cgagcccgcc tcgccggttg tggatgctcg cgccgaggag      3780
     aaactcgtat cgttaaatgt aacttccccg cccgcccggt gggatcttgc gactcggtat      3840
     tcttcgtggc tcaaacttat tcgtatcacg gcgtatcttt tcaagtttat taacgcctgt      3900
     cgacgccgta gcgtcgattc ctcttctctc atttcctcac ttcacacccc ttcactcctc      3960
     gaatgtaagt cagccaaaac attttggctc aaaagcatcc aatcggagct tttttcggtt      4020
     gagattcgcg ctctaaccgc cggtaaaacc gtccctacga ggagctcgtt ggccgctttg      4080
     acgccttttc tcgattgcga cgggatatta cgcgtgggag gtcgtctccg tcacgctcct      4140
     ctcccatata aaacacgcca ccccgttttg ctggcgtcgc atcctctcgt gaacctcatt      4200
     gcattgcaag ctcacttgcg agttctgcac ggggggctgc agctcaccct taacacgctc      4260
     cgtcacgagt attggattgt tcgcgctcga agtttggtca aggcggtcat ccacaactgt      4320
     accgtttgtt gtcgagagcg agccgcgatt ccggttcagc taatggggga tctccccaaa      4380
     gcgcgcgttt caactccgtc tcggccgttt tctcactgtg gtgtcgatta cgccgggccc      4440
     gtacagacac gcgcgtccgc cgggcgcggt ataacgtcga ggaaggcata tatcgctgta      4500
     ttcatatgct tggccacacg cgccattcat ttggagttag tcggggatta ctcgaccccg      4560
     tcgtttctta atgcgtatct tcgtttttgt tcgcgacgag gcctcccgtc ggcaatgtac      4620
     tcggacaacg gcacgacgtt cgttggcgcc gacagggagc tgcattccgc ttatcagcat      4680
     gccctgcgcg atcctgactt ccaaagtaaa actgcatgcg ataacgtctc gtggcatttc      4740
     atccccccgt ctgccccgca tttcggtgga ttgtgggagg cgggtgtccg cagcatgaag      4800
     catcatctgc atcgaatttt agatcgtacc acgctctcgt ttgaagagtt cactacgctt      4860
     ttgtgcagga tcgaggcatg cttaaactca cgtccgatcg cgccgttgtc cgattcattc      4920
     gacgactatg agagccttac tccgggacat ttcctgatag gctccgctct caatgttccg      4980
     cctgaacctt cgctgctgca acttaacgaa aatcggttat cgcggtggca acttattcgt      5040
     cacctctctg aacgattttg gaagctatgg gcgaccgatt acgtcaacac gttgcagcag      5100
     cgaagcaagt ggcgaaagat tcacccgaat ctaaaaatcg ggaaaatagt tctattgcgc      5160
     gatgcgacgc tacctccgtg caagtggaag ctcgggcgag tcacgcagct tcaccccggt      5220
     gccgatgaca taacacgcgt cgtcaccgtg aaaaccgcaa catccgagtt taagcgccca      5280
     atcgggcaac tatgcctcct tcccgtcgag gacgtaacgt cgagcgacta actcgttcgc      5340
     ttcggcgaca tcctattcta agtagcgtcg ttaaatttat cttgtttcga catgttagat      5400
     ttagtttagc tttaagtcac atttaagcat taagtgttat tcgcctatat tttaaggagc      5460
     gttcgttctt ttgtacttca ctcatgtcat taagatacat tgttaagtat gacctttatc      5520
     attttcattc catgtttgcg ctcgcggccg tcgaccggct cgcgtcttct tgcgattgtt      5580
     ttctcgttcc tttgaaacga gcgtttcaag gcggccggta                            5620
//
ID   BEL-3_MoPha-LTR repbase;    DNA;    INV; 858 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-858
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1149-1149 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 858 BP; 177 A; 227 C; 213 G; 241 T; 0 other;
     tgtttgggat tcgacgttaa cataatgttt tccgataaac aaaaatattt gtctctagtc        60
     gtgaaattgt tatcgggaat tcgtcatctc atctcgccga gccggagcgt ggacccgtgg       120
     atttcacacg tccacgccgt gatcgcgtga ggtaccgggc cgatcagctg cttgctcttt       180
     cccgatcttc acctcctaac aacgaatatc gggggagagt aaggcgcgtt accgaatttc       240
     ggcgcgaagt tgagtcagtc ttgtgtctgc tcttgatcgc caagcctctc tcaattctct       300
     aacgttcatt actcggggta tccctcgact agattatcaa tttcgaatct cattcacgtt       360
     tgagttaaga tctttctatt atattgtgaa agtgtcgcga aatcgcgagt gcgcggcgtg       420
     cgttgtgacg tcgcgggaag caacggtgat ctcgtgttcg cgatcgaacg tctgcctcgc       480
     gattagtttt tcggtctcgt tcgcgctcaa gatctccgtc ccgttggggt gtcctgacaa       540
     gcgcccggca agatatccgc cgcgcaatta aaggcagaaa ggacaaccgt tcgacccgaa       600
     gatttccgat cgttcataat tgactcgtcg ttcccgcacg ctcgcgtctt ccgcgattcg       660
     cgcgaattgt atggttaatt atttaagaaa taaatggtgc ttctgactgt gaaaaccaat       720
     cctgcctgtt tttcattcgt gtttgtggaa cctccagcga gtccgcggat tcgcgcaaca       780
     cgtcctccgc gctcaattct gagcggttcc ggcctctagc gcatccggtt gccgtcggca       840
     aacgatttcg cgcgcaca                                                     858
//
ID   BEL-3_PBa-I repbase;    DNA;    INV; 5663 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5663
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 673-673 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~85% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2058..2753,2757..4838,4783..5661)
FT                 /product="BEL-3_PBa-I_1p"
FT                 /translation="YHHWRGLLWVSYQTRYYQTSSIDANCSAFNLRLDNTR
FT                 TINTSHSYTRFAHQVSAQQEDDIKELLTKFWVQEELPIDNHSQLSPEEEEC
FT                 EAHFRTTHSRDSSGRYIVRIPLKTSATTLGSSYQTASRCLQRTLRRLNKNE
FT                 EYSQLYRSFMREYEELNHMRRVNGDDHAPGMTLAHDVSASGGLRSWVALRR
FT                 SALLLIFLITCLIMEYLKPTVQLQTSGCIQRFKPYIIREISQHHAHGANLL
FT                 LNIMDVLIWIRHHRHIFATDITKMYRQVRVHPEDWDLQRILWIDDQLNEVP
FT                 FQLTTVTYGTKAAPFLATRALLQLVEDEGHSFPLAIPSFTHGRYVDDIFGG
FT                 ADTIDQLISVAQQVIGLCNAGGFPLAKWHATNPELLSAVSSNSSSKSTLTL
FT                 DDCATKLLGLSWLPQEDKFIFSSKFSDQPGKLTKRLILSEVAQIFDPLGFL
FT                 SPVVIKAKMLLQELWLHTLGWDDPLPALLSSKWSAIRAELRSLASVSVPRW
FT                 FGTWSYSRVELHGFSDASQLAMAAVIYLTVSSPSTGSVTSLVCSKTKVAPL
FT                 KKLTIPRLELIAALLLTKLMSHVQATLKLKVNSTHLWTDSQVTLIWIKSHA
FT                 SRWKDYVRNRVAQIQQLSTNASWRHVPGSMNPADCASRGVSTDQLIAHPLW
FT                 WTGPQWLTQSQEFWPAQPELSPGLINMEARPGLALLAAAPAPAYHWDLVYR
FT                 YSSLNKLLRITALCSRLICRLKQKLSSPPAIIIPTQDIEQAKLFWIKATQA
FT                 AYFSHELKMLNHGTQLPSAHAFSRLTAFIDDQGIIRVGGRLNELSISYQER
FT                 HPAILPRHSQLSSLIIDDAHKATLHGGTQLTLAKIRQTYWIIGGRTPVKSH
FT                 VLKCMVCARQRGIRARQLMGQLPLARVTPSRAFLHTGVDYAGPVQLKAWKG
FT                 EALKHTRAGSVCLCVSQRLQLINIQGLDLCVCVSRNVCNSSRGRQRLLNGR
FT                 FPSCVQKICLKKRSSSYSLFGLRNQLHRADAALKKLFIDSSAEHKVITSSI
FT                 SASGTNWKFNAPASPHMGGKWEAVVKSIKFHLRRTIGDTLLTYAEFSTFLT
FT                 QIEAVLNSRPLEPLSDDPEDVSALTPGHFLIGSPLNSIPEPSLLDLSSSRL
FT                 SRWQLIQQRVQQFWSQWSAHYLQRQQSISKWHHPSNIIKVGSLVLLTDERL
FT                 SPSKWLLARVLELHPGKDGLTRIVTLKTATTTLTRPIAKLAPLPAHPEDQH
FT                 QQKLADGGR"
XX
SQ   Sequence 5663 BP; 1451 A; 1551 C; 1218 G; 1440 T; 3 other;
     tttggtcctt cgagccggat tcgtgagtga aaatccgtat cgtgttagtg tcgtgatcag        60
     ctcgcgtcac agtgattctc cgcgacttct agaccgttct tcgaaggtga ctcttcgtgg       120
     acagcgcgtg ttaagactga tttgtgtttg tttgtgcacg tgaaagccat caagttcgcg       180
     cgtgttcaat atggctgacg acaagaagcc tgagattgcc aggctggagg tgcccgcttc       240
     ggcttccgcg gtcggcgctg ctggtccgtc gggctccgct cgtgctcccg cgtcaagccg       300
     ctcatctcgg cgctcttctc gagccagctc ggctcgcgaa gcaactcacc cgctgccaac       360
     agaccttgct ctgaaggtga agtctcagca cagcaggctc accatattgc gggaactgct       420
     cggtgagttt gacggctcaa ctgtttcgct cgaggagctt catgaatgga aggctcaggc       480
     cgacgaggag ttcagggcga tctccaagga gcackcattg tttgaagtct catggccatc       540
     ggatctcctc gaccacgagt acttctcgag caatttctat ctgcaggctc agaggacgta       600
     ctttgctctg aagcgagaga tcgccaaggc caaaacacag ctcgctctca gttcagctcc       660
     tcccagctcg tcggccagct cacagggaaa gcttccggac atatcgttgc ctgaatttag       720
     aggcgattac gcggattggc cgacgttcag cgatatgttc cgaagtctca ttctggacaa       780
     tcagcacctc tctgatgtgg agcgtcttca ctatttgcga ggctgtctga aaggtccgcc       840
     tgctcagctc atmtctaatt tgccgctcac aggtgcctct ctcggagact catggaaatt       900
     gctcacagat cgcttcgaaa ataaacgact gctcattcag tctcacttgg atcagctctt       960
     caccatctcg acgctcaccc agaagaatgc caccgctctc aatcggctca tcaccacgct      1020
     gtgacagagg ctcacacggc ttgaccacat tgggtgtcac agatttgggt gatcacatcc      1080
     tggttcatca tgtttctcgc catctggacc gctcaactcg agaagcatgg gagacttctc      1140
     ttggctcatc tcaagaatat ccatcgttcg ctcaattaaa ggcattcttg aatgctcgag      1200
     tccgagctct cgagcgaata gaatctactc atccgccatc agctcaggca ccgaagaaga      1260
     cagctcttac ggcttctcgc tcaaccagac cagtctgccg tctcgaaaac cacggcattc      1320
     tctcagggct cgacagctca tccatgtgac tattgtgawg gccaacacta catagtccat      1380
     gtgaacagtt cagggatctt gcaccctcgg cccgaagatc cttggcagag cgcaagcgat      1440
     tgtgctttaa ttgccttgga cgccacagtg tcaaggcgtg caagagcgca aagggctgca      1500
     agacctgttt tgggcggcac catacgatgc tgcatgagac tgattcacta agcccagctc      1560
     aaccatggca gcttcaagct catcacagtc cgctcaacca tcgtctcatc tcaacagtca      1620
     ccatcgtcag ctcattgaag ggtcggtgca gtcgtcagct catcgcatgc caatgccaaa      1680
     tcatgttcag ctcttttggg aacagctcta gctcaagtta aaacttcttt aactgcgtac      1740
     aaggtacgtc tgctcattga ttcaggctca gaactcagct tcatctccga acagctcgta      1800
     cgtcagctca gcattcctcg ccaacaatca tcgctcatca ttcatggaat aggaggctca      1860
     aggtcaactc aaactcttgg cgtcgtgcaa ctacaattgg actctctaac ttctcaagac      1920
     acagtcaaga tcaacgctca tattctaaga actgtatcat caattacgcc ttccagtaaa      1980
     gtgtcaactc aggaatggcc acacctgaag aaactgtgtc ttgcagatcc agaatactac      2040
     catcctcgtc cgattgatat catcattggc gcggactctt atgggtcagt tatcaaaccc      2100
     gatattatca aacatcatcc atcgatgcca attgctcagc tttcaatctt cggttggata      2160
     atactaggac catcaacaca tctcactcat atactagatt tgctcatcaa gtttctgctc      2220
     aacaagagga tgacatcaag gaattactca ccaagttttg ggttcaagaa gagttaccta      2280
     tcgacaatca ctctcaatta tcacctgaag aggaggaatg cgaggctcat tttcgtacta      2340
     ctcattcaag agactcatct ggacgataca tagtgcgaat tccactcaaa acatctgcaa      2400
     caactttagg atcttcttat caaactgcct ctagatgtct acaaaggact ttacgtcgac      2460
     tcaacaaaaa tgaagaatac agccagctct atagaagctt catgagggag tatgaagaac      2520
     tcaatcacat gagaagagtt aacggagacg atcatgctcc cgggatgacc ttggcacatg      2580
     atgtttcggc atcaggaggg ttgaggtctt gggtggctct tcgtcgaagt gctcttctcc      2640
     tcatcttcct tattacttgc ctcatcatgg agtacttaaa gccgacagtt caactacaaa      2700
     cttcgggttg tattcaacgg ttcaagccct acatcatcag ggaaatctct caatgacatc      2760
     atgcacacgg ggcaaatttg ctgctcaata ttatggacgt tctcatctgg attcgccatc      2820
     atcggcacat attcgccaca gacatcacta agatgtatcg acaagtgaga gttcatccag      2880
     aagattggga tcttcaacgc atcctctgga tagatgatca gctcaatgaa gtccctttcc      2940
     agctcactac ggttacgtac ggaacaaagg ctgctccatt tttagcaact cgggctcttc      3000
     ttcaactggt tgaagatgaa ggacattcat tcccgcttgc tataccatca ttcacccatg      3060
     gtcgatacgt ggatgatatc ttcggaggtg cagatacaat tgaccaactc atttctgtcg      3120
     ctcaacaagt aataggcttg tgcaacgcgg gcggtttccc actcgcaaaa tggcatgcaa      3180
     caaacccaga attactctca gcagtctcat ccaacagctc atcaaagtca acactaactc      3240
     ttgacgactg cgcgaccaaa ttactcggat taagttggct tcctcaagaa gataagttca      3300
     ttttctcatc caagttcagt gatcagccag gtaaactcac gaaacgcctc atcttatctg      3360
     aagtggcaca gatattcgat ccgctcggtt ttctttctcc ggtcgtcatc aaggcaaaga      3420
     tgctcttaca agagctctgg ttgcacactc tgggctggga cgatccatta ccagcccttc      3480
     tcagctctaa atggtcggca ataagggccg agctcagatc gctagctagc gtctcagttc      3540
     cacgatggtt tggtacatgg agctactcaa gggtggaact tcatggtttt tcggatgcat      3600
     ctcaacttgc catggcagca gtcatttatt tgactgtcag ctcaccgtcc actggctctg      3660
     tgacgtcact tgtatgctca aagactaaag ttgctccgct caagaaacta accattccca      3720
     ggttagaact cattgcagcg ctgctactca cgaagctcat gtctcatgtt caagccacac      3780
     ttaagctcaa ggtaaattca actcatttgt ggacggattc tcaagtcact ctcatatgga      3840
     tcaaatctca tgcatctcgt tggaaagatt acgtcaggaa cagagtagcc caaatccaac      3900
     aattgtcgac aaatgccagc tggcgccacg ttcctggctc tatgaatcca gcagattgcg      3960
     cttctcgagg tgtttcgact gatcaactca ttgctcatcc attgtggtgg accggacctc      4020
     aatggcttac tcagtctcaa gagttctggc cagctcagcc agaactttct ccaggactta      4080
     ttaacatgga ggctcgtcct ggattggcat tgcttgctgc tgccccagca ccagcatatc      4140
     attgggactt agtgtacagg tactcgtcac tcaataaatt gcttagaatc acagcactat      4200
     gttccaggct catatgcagg ctcaagcaaa agctcagctc tcctccagct atcatcattc      4260
     ccacacaaga tattgaacaa gctaagctct tctggatcaa ggcaactcaa gcagcatact      4320
     tctctcatga actcaagatg ctcaaccacg gaactcaact gccatcagct catgccttct      4380
     ccagattgac ggcattcatc gatgaccaag gtatcattcg tgttggagga agactcaacg      4440
     aactctcaat tagttatcaa gaaaggcatc cagcaatcct gccacgtcac tctcagctct      4500
     catctctcat catcgacgat gctcacaagg ccactctcca tggtggcact caactgacgc      4560
     ttgctaaaat ccgtcagact tactggataa ttggtgggag aactccagta aaatctcatg      4620
     tactcaaatg tatggtctgc gctcgacaac gaggaattcg tgcacgtcag ctcatgggtc      4680
     agctccctct tgcacgagtg actccctcac gtgctttttt acacacagga gtggactacg      4740
     caggaccagt gcagctcaaa gcttggaagg gcgaggctct aaaacataca agggctggat      4800
     ctgtgtgttt gtgtgtctcg caacgtctgc aactcatcta gaggtcgtca gcgactactc      4860
     aacggaaggt ttcctagctg cgtacagaag atttgtctca agaagaggag cagctcatac      4920
     tctctattcg gactgcggaa ccaacttcat cgggcagacg cggctctcaa gaaacttttc      4980
     atcgacagct cagcagaaca caaggtcatc acttcatcta tctcagcaag cggtaccaat      5040
     tggaagttca acgctccagc atcgccacat atgggtggca agtgggaagc tgttgtgaaa      5100
     tctatcaaat tccatcttcg acggacaatt ggagacactc tgctcaccta tgcagaattc      5160
     tcaacgtttc tcactcaaat agaagcggtt ctcaactctc gaccgctcga accgctcagt      5220
     gatgaccctg aagacgtctc tgctctaact cctggtcatt ttctcattgg atctcctctc      5280
     aactcaattc ccgaaccatc tctacttgat ctgtcctctt caaggctgtc taggtggcaa      5340
     ctcattcaac aacgggttca acaattctgg tctcaatggt cagcacacta tctacagcgt      5400
     caacaatcca tttccaagtg gcatcaccca tccaacatca tcaaggttgg gtctttagtt      5460
     ctgctcacgg atgagagact atcaccaagc aagtggcttc tagcaagggt tctagagttg      5520
     cacccaggaa aggatggact caccaggatt gtcacgctca aaactgccac cacaacactc      5580
     actcgaccca tcgccaagct cgcacctctg cctgctcatc ctgaagatca acatcagcaa      5640
     aaacttgctg atggcgggcg gaa                                              5663
//
ID   BEL-3_PBa-LTR repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-656
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 674-674 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 656 BP; 137 A; 164 C; 162 G; 189 T; 4 other;
     tgttcgagaa tgagtttata ttctcgatga aagttgcgcg caggtgtctc tttctcagat        60
     ggcagcactc atggacgcat gcattatgca tgatcgtcsg aagktggccg cctggggcgc       120
     ttccggcact tctctagtgc gcgcgcccat tagatcactc tcgtttcggc cgcatcttgc       180
     gtatcgctcg agattgtgct cgttctcggc tctcttgatg cttcttttgt gcaaggtgag       240
     agatttaata acggagactg ctctactcac ggccactatc aggattggaa gtgacgtgat       300
     cagtgtgctg ccggacattg gacgaataca tmatcgcgcc gcgctcgtgc tcaccacgtg       360
     gtgttcacgt ggccggcgag tgcaaccgtg atctcgtctc tccctttggt cagctcactt       420
     ggagagcatt awctcaacct ctccaagatt tttaatacac tgttcagctc agacttctca       480
     ttgtgtcagc tcgatcgcgt tccgcgtgtg acgcgtgaaa actctaatag tgcgagacac       540
     tcaagactgt cattgggatc ttgtgatata gactaagtga atcgcggcat agactatgga       600
     acatttttcg ctcgcagtcc cagcattttt gtgataattt agctaattcg caaaca           656
//
ID   BEL-3_PPo-I repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-693
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2959-2959 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..423
FT                 /product="BEL-3_PPo-I_1p"
FT                 /translation="DMWWTGPKFLMEHESMWPSCDQSKVTMNDLPEVKVHL
FT                 NTTIDNEKRTQALVDFNRYSKLIFIQRSFAYLLRFIHNCRSTNNKRVGALQ
FT                 PEELSSSFKKLVYLSQAESFIKEIKILRSNGVINSKSSLISLNLFLDNENI
FT                 FE"
XX
SQ   Sequence 693 BP; 217 A; 136 C; 112 G; 228 T; 0 other;
     gatatgtggt ggactggtcc caaatttcta atggaacatg aatccatgtg gccgtcctgt        60
     gatcaaagca aagtcactat gaatgacctg ccggaggtta aagttcattt aaataccact       120
     attgataatg aaaaacgtac acaggcatta gtcgatttca atcgatattc aaaattaata       180
     tttatccagc gatcatttgc ttatttgctt cgtttcattc acaattgtag aagtaccaac       240
     aataaaagag ttggtgcatt gcaacccgaa gaactttcct catcctttaa aaaacttgtt       300
     tatttgtctc aagctgaaag cttcattaaa gaaatcaaaa ttcttcgttc caacggcgta       360
     attaattcta aaagctcttt aatttcccta aatctattct tagacaatga aaacatattt       420
     gagtaacatt accataagtt tcttcatata aacataaatt catccgtttc attgttccaa       480
     caagagcacc tgcatctttt catgtcggat catttttaat tactgatcgc aaggatagaa       540
     aatgtgaaat aacaaaatgt tctctgtgat ggtgtgtctt aagtaaaaaa gtccacatct       600
     ggtagccttc atcaatcatc catcttcgtt tttgcattgc gttgttgtct ctcgcagagg       660
     cagaccactt tgctctcttg cagcaacggt ggt                                    693
//
ID   BEL-3_SI-I  repbase;    DNA;    INV; 5430 BP.
XX
AC   AEAQ01011211;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SI_;
KW   BEL-3_SI-LTR; BEL-3_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5430
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011211; Positions   13114    7685.
XX
CC   Positions [4190-4480] - Integrase core
CC   'GATGG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           284..2932
FT                 /product="BEL-3_SI-I_1p"
FT                 /translation="MKVTSRRPAIPEDGSSTRVTNTTKTSKFPKLELPKFS
FT                 GNIKEWLPFWNQFKKIMSISSEDKFQYLLQATGPDSRANEIVKSFPPTGEN
FT                 YVKAITSLRNRFGRDDIVEEFYVRELLGLVLQNAVKGNKKSSLGNLYDKIE
FT                 CYIRASETLGVTTDKCAAMLYPLVESSLPEEVLRAWQRSGQRGLAEDNGQR
FT                 ESTDRLAKLLKFLQLEVENEERIDMALTGFGLSTEQDKAKKLRNKPESSKE
FT                 TASASILLVAKEQKKPVCIFCKSNHESQHCENARKLTLDERKDIVKKENCC
FT                 YNCLIRGHAAQKCRSRLKCDWCTRRHVLLMCPGIFRKESVSAIKSDDNKNT
FT                 ISDDNKKTVEDSSLATFCERYDVYLQTLRVKIYSMSREKIVTAVIDTAAQR
FT                 SYIRTDIVKDLGYNSLGELKVTHTLFGGIKSEVEKHEMFRIHLKSLDDSYA
FT                 CNFSAMNTNVICSTISSIKKDSWVNELRNNNINLTDIGEETGAIGILIGAD
FT                 VAGKLMTGRKYNLENGLTAFETLLGWTVMGLPMISRRSDTAVMLTTLFVQE
FT                 ASPSDLWRLDVIGITDTIEKMDKLEQEERIREFLQETAKLNDEDRYEVKLP
FT                 WVDDHAPVSSNYDIARNRLKKCTQKLKAQNLFEAYDSVFQEWLSEGIIERI
FT                 TDSEINGSGHYLPHRPVVKTHGTTKIRPVFDASASRKGYPSLNQCLETGPN
FT                 LSELVPSVLNRFREGKIGVVSDIKKAFLQISVHKEDRDYLRFFWIVNNEMI
FT                 IFRHCRVVFGLACSPFLLATIIEFHLSAYIKAVKGTETIIQKLKNAFYVDN
FT                 CVASVNSEEELENFVREATSILAAGGLRGWESSGETIENESSLVLGILWNK
FT                 KEDTISINPAVLNENSPDVITKRTILSATR"
XX
SQ   Sequence 5430 BP; 1809 A; 978 C; 1251 G; 1392 T; 0 other;
     actagcgcag tcggtaggac gcgatggatg ctatcaagaa acagagaaaa atccagagga        60
     tggccttcac gaaggcactc acggctttta cgacgaaaat ggacagtgat tgctcaagtg       120
     aagacaagat gatggccttc caatttctcg agacaaagat gtcggaatta gatactgtac       180
     attcggcata taatcaggcg ctctttcaat cagacctgga tgaagcggtt atcatcaagg       240
     agttggaatc gacgcatata aaacgcagta cctaaccgca aaaatgaagg taacgtcgag       300
     aaggcccgcg ataccggaag acggatcaag cacgagggta acaaatacta ccaagacctc       360
     aaagtttcca aagctggaac tgccgaaatt cagtggcaat atcaaagaat ggctaccgtt       420
     ctggaaccaa ttcaagaaaa ttatgtcaat aagcagtgaa gacaagttcc agtatcttct       480
     acaggccacc ggtccagatt cccgagccaa tgagatcgtg aaaagttttc cgcccacggg       540
     cgagaattac gtaaaggcga tcacgagctt gagaaatcgt tttggaagag acgacattgt       600
     ggaggaattc tacgttcggg aacttttggg tctcgttctg caaaacgccg tgaaaggaaa       660
     caaaaagtcg tcgctgggca acctatacga taaaatcgag tgttatatac gagcatcgga       720
     aacgctcggg gtgacgacgg acaagtgtgc ggccatgctc tatccattgg ttgagtcgtc       780
     ccttccagaa gaggtcctac gagcatggca acgtagcggt caacgaggat tggctgagga       840
     caacggtcaa cgtgagtcta ccgatcgact ggccaaactg ttgaaattcc tgcaattgga       900
     agtagaaaac gaggaacgta tcgacatggc gctaacagga ttcggattat cgacggagca       960
     agacaaagcg aaaaagctga gaaacaaacc agagtcgtca aaggaaacgg ccagcgctag      1020
     cattcttctc gtcgcgaaag agcagaaaaa accggtctgt attttttgta aatcgaatca      1080
     cgaaagccaa cactgtgaaa acgcacgtaa gttaacatta gatgaacgta aagatatcgt      1140
     caaaaaagaa aattgttgtt acaattgttt gatacgagga cacgcggcac aaaaatgtag      1200
     aagcaggtta aaatgcgatt ggtgcacgag acgccatgtt ctcttaatgt gtccgggtat      1260
     atttcgcaaa gagagcgttt ccgcgatcaa atcggacgat aataagaata cgatctcgga      1320
     tgacaataag aaaacagtcg aagattctag tttagctacg ttttgtgaaa ggtatgatgt      1380
     gtacttgcaa acacttcgcg taaaaatata ttcgatgtca cgggagaaaa ttgtaacagc      1440
     ggtcattgat acagccgcac aacggtcata tatccgcacc gatatcgtaa aagatttagg      1500
     ttataattcg cttggagaat taaaagttac acatacgttg ttcggtggaa ttaaatccga      1560
     ggtcgagaaa cacgagatgt tccgaataca tttgaaaagt ctagatgatt catacgcatg      1620
     caatttttct gccatgaata caaacgttat ttgcagtact atttcgagca tcaaaaaaga      1680
     ctcttgggtt aacgaactac gcaacaataa tattaattta actgatatcg gagaagaaac      1740
     cggtgcgata ggcattctta tcggtgcgga cgtggcaggc aaattaatga ccggtcgaaa      1800
     atataatttg gaaaatggac taacagcatt tgaaacgctc ctaggttgga cagtaatggg      1860
     attgccgatg atatcccgga gatccgacac cgcggtaatg cttacgacgc tgtttgtgca      1920
     agaggccagt ccgtctgatc tgtggcgttt agatgttatt ggtatcacgg atacaattga      1980
     aaagatggat aaattggaac aagaggaacg aattcgagag tttctgcagg aaacggcgaa      2040
     gttgaacgac gaagatcgat acgaagtcaa attaccgtgg gtggacgatc acgctcctgt      2100
     ttccagtaat tatgatatcg cgcgcaatag attaaagaaa tgtacgcaaa agcttaaagc      2160
     ccaaaatctg ttcgaagcgt acgatagtgt ttttcaggaa tggttgtcgg aaggcattat      2220
     tgaaagaata acggacagcg aaattaacgg ttccggacat tatttaccgc atcgtccagt      2280
     agtaaagaca cacggcacaa caaaaatcag accggtgttt gatgcctcgg cgagcagaaa      2340
     gggttatccg tcgttaaatc aatgtcttga aacgggaccc aatttaagtg aattagtacc      2400
     gtcagttctg aacagatttc gagaagggaa aattggagtg gtgtcagata ttaaaaaggc      2460
     gtttttgcaa atctccgtac acaaagaaga tagagattat ctacgtttct tctggattgt      2520
     aaataatgaa atgataattt tccgtcactg tcgtgtagtt ttcggtttgg catgtagtcc      2580
     ctttttatta gcaaccatta tagagtttca tttatcggca tacattaaag ctgtaaaggg      2640
     aaccgaaact ataatacaaa aattgaaaaa cgcgttttat gtagacaact gtgtagcaag      2700
     cgtaaattca gaagaagagt tagaaaactt tgtacgagaa gctacgtcga ttttagcggc      2760
     aggcggatta cgtggatggg aaagctcggg tgaaacaata gaaaatgaat cgagtctcgt      2820
     tttaggaatt ttatggaata aaaaggaaga tacaatatca atcaatccag cagtattaaa      2880
     cgagaattca cctgatgtca taacaaaaag aacaattctg tctgcaacac gttaaagttt      2940
     tcgatcctat aggttttacg tgctctgtgt ctttactacc caagctgtta tttaaagaat      3000
     tttgggcgga aaaaatagac tgggataccg aaatcgaaga caatcggggc aatcaattta      3060
     gaaactggct gaatgactta gataaattaa accagattaa aattccgcga aaactgggca      3120
     aaagaaatct aacgttacac acattttgtg acgcaagtgg actagcatac gtggcggcgg      3180
     tctttgctag agttaaggac gggaataaca caagtgttag acttctaagt gctaaatctc      3240
     gtatagccct gtgaaaaact actattccgc gtttagaatt gatggcggcc accattgcag      3300
     tccggctaac ggtgtctaaa tctctaacgc gaaaaatttt aaagacaacg ttttggacag      3360
     attcgacgac ggtcttagcg tggattaaac gggatacgca gtggggtaca tttgtctgga      3420
     atagaataaa agaaattcga acttttgcaa accaaatgat tggagacatg tacccggaga      3480
     tttaaatccc acggatcttc cctcgcgtgg ctgcagtccg gcacaattag tgcattccga      3540
     atgatggttt ggccgaacgt ggctctataa agtggaatcc gagtggcgca taactagtcc      3600
     agacatttat agtgaagagg aaataataaa agaagcgaaa aggtcaattc taatacacac      3660
     attataaact gagattttta agtttaaagc caattgtact tttcttccta cagcaaactt      3720
     gttcgattct ttgcgtggat gcttagattt tttgctaact gtaggaaaaa agtcagcaat      3780
     aaagaagttg caaagaagat taacattatc ttttgcagag agaaaagcag ccgaaacgaa      3840
     actttttaag catttacaaa gtaatatgtt taactcagta tctaaaacta agttatcggt      3900
     atttcgaaca atgaaaactg aagacgcgct atacgttttg aaaactaaga tttttaatag      3960
     acgcgataat cgtaatttct tgtgccctat tcttttatcc aacgacaaag atatagttcc      4020
     aatgctgatt cgggaatatc acgagtctat gggccacgcg gggacacaaa taattatgac      4080
     caagctacgg gagagattct ggattatttc tgttcgtaaa attgtaagag cagttatctc      4140
     tgactgcata atttgtaaaa aacaaagagt taaacgcatg gaaaccaaaa ctcctccgtt      4200
     acctcgcaat cgcattcaag atgccgcgat tttcgaaata gttggagtgg attttgcagg      4260
     gccactaatt tcgcgggaag ggggggggaa gagttggatc tgtattttta cgtgtgcagt      4320
     gtacagagca atccatcttg aattagcatc gacgctatca acacagggtt tcttagaatg      4380
     tttgcgcaga tttatagcaa ggcgcggacg tccaaaagtt atatatagtg acaatggaac      4440
     taattttacg ggtgccgcta acgctctgag caagttagat tgagaaaaaa tcggcaaaca      4500
     taaatcgcta actcaaattg aatggtattt caatccacca gcggcaccgt ggtggggtgg      4560
     ttggtgggaa agattgatag gaattttgaa aacgttgctg cgtaagattt tgagcaaagc      4620
     gagtcttcct tatgaaagct tatataccgt tctatgtgat gtcgaagcaa taataaatgg      4680
     tcgcccactc acatatatct cagaagatcc ggacgatctt agaccattgt cgccttcaat      4740
     gtttttgcaa gagattcgag agtacggtgt tccagattgc gacatgctct atcgtaaaaa      4800
     actaaataac aagttcaaat acagacagaa aattttcgag gaccttcgga aaaaattccg      4860
     cactgaatat ttaggccaac tattgttaaa aaatggaaag aaagaaacgc gaaaaatcaa      4920
     agtgggtgat gtcattttgg cgtcggcgat gatacacata gacgcataaa ctggcctctt      4980
     acacgaataa tagaaataat tccgggttcc gatggtcaag gcagagtact cactctaaaa      5040
     attaggaatg gtgtgcttaa gagaccgata cagaggatct atccgttaga gatttcgcaa      5100
     gaaaaaaaaa gatgttgtaa cagatttacg ggaaaaagca aaatccggaa aagttatgcg      5160
     taaagatctc aatcgggagc cgaataattt taaaaccaat gacacgttgt taagttataa      5220
     accaaaggag caagatccga agaccgttac cactagaagt ggtcgcgtag ttaagaaacc      5280
     ggaacgtttt ggatgttact ttaagttagt tgtaagtttt atatgtccaa ttgtcaatgc      5340
     gttcgataca aatttaagta gcgtaatagt ttattttgta acagtttatt ctgtaagaac      5400
     atttcgtttt cccacaaaag gaggggagga                                       5430
//
ID   BEL-3_SI-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   AEAQ01011211;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SI_;
KW   BEL-3_SI-I; BEL-3_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-248
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011211; Positions    7684    7437.
XX
SQ   Sequence 248 BP; 64 A; 60 C; 67 G; 57 T; 0 other;
     tgttccggcc gattgatacc gaccgggtgt agcttgttag aagcgacaag gcgtcgttag        60
     tggcgctagt aacgttcagg ccccggcgtt acgagggcga gtagcggtag gtcagagact       120
     ctcgagacac gtgaagtgca agcgaagggc accgtatact gtgttagatt ccagcacaat       180
     aaagcactct aaaagaattc actgtccgtt atctggatca atctcttcat cccgtcgaac       240
     attcaaca                                                                248
//
ID   BEL-3_SiCu-I repbase;    DNA;    INV; 5820 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5820
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4979-4979 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..5800
FT                 /product="BEL-3_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MPAITRKMSASGXXRAEDTQNSPAVPHSRELQNLVWP
FT                 MDNHRPAGSGRQEDGGTPRQDDQAQEGAGRAGVLGDQEERPASXQXQGNAN
FT                 ITLERRSNPPSSNGSISSRSHSSSSSRRSRQVTLGKEEILAKLREEQRQND
FT                 LRLEEERLRVEQDRLRLRLLEHKAKAEEQRLEDQRKLVIQRYELELDDDEE
FT                 GDARSGVQSLPPVNPDVEEWVATQNQGAHVIQRDVKKSNVHLPRPGNHVDE
FT                 SRPPFDRNFRENHPAVGYAQQHRIPSESEGFQKMADSIVSAMKNMVQSAQP
FT                 HQEMKNFVARQSGAKDLPDFHGDPEEWPTFYGRYERSTKMCGFSNEENIVR
FT                 LQRSLKGKAKESVVSMLASACNVDDVMDVLRKRFGRPEQIIKKMLERAKNA
FT                 PTPVEGDFQSIVDFSIAVKNFCATAGSLNLPLYLNNPQLXEEFRKKLPSSL
FT                 QLEWARFQIRNGGNADLGDLSGFLDEIAEAAVLVCDDVSSRKPKMKNQCLL
FT                 VTDVGCPLKCKEAHGLSKCPKFKNMQVKXRWECVMRVRVCFCCLEKGHPRD
FT                 KCPKSGPCPLDGCKLVHHQLLHEDRRKKTPDGAQDGGQPNVSSVISMPARM
FT                 PISNVLMKVAPVQLVGPKGSVIVNAFLDDGSSLTMIEEDIANSLGLDGETK
FT                 ALDLNWLGGKHDHDEMSRLVSLKIRGLEENEEFELQNVRTKKKLDLPVKPI
FT                 TDYKNLKKWTHLEEVPFPKTLNKRPSIIIGSDHSRLLLPRKALEGPSNAPI
FT                 AVWTYLGWVIHGKDGRPPGTKTRHVSLVNVENVDPDQALHDLVKEQFRLEA
FT                 LGAVNCKKLPQSKENERADTLMEKTSRRVGESWETGMLWKTDGITLPESKC
FT                 AAIRRLKTLEKQMDKDEPFAEMYCAKIEEYLQKGFCRKLNPEEAAVDTGRV
FT                 WYLPHFGRTNPNKPGKIRLVFDCAAKVDGMSLNDALIQGPDLMSPLINVLL
FT                 KFRQREVAFSGDIRDMFHRIXIRQEDVAALRFLWRGKDRRQPPEVYTMDVM
FT                 IFGAVSSPYQAQWIKNRNAEXFEDQYPDAVDAIKNRHYVDDYLDSCETVEQ
FT                 AIQKIMDVREVHRRGGFEIRGWLCNNQDVLRVVDPSASSEVTTLNVKEDKL
FT                 ERVLGLHWDPKLDVFKFQTTFRAIDPMIISGEKIPTKRELLKLIMSLFDPL
FT                 GFIAHLTVRGRILLQDVWRSKIGWDEKLKPELEPKWTCLLEQILKIPDAVV
FT                 PRCFAPEVSKCEDLQLHVFCDASQQGFSAVAYLRATGRGGKVSVNIMLAKS
FT                 RVTPIKCVSIPRLEMEAALVGARISDFVKKNCDLPLKKTYLWTDSRNVLCW
FT                 IRAEDPSRFKIYIAHRIGEILDLTEVEDWRWVPTADNVADDATRDTTPADV
FT                 SPSSRWFNGPTFLKKPVENWPQETEVKLADAKMEDLELKRECCMVVTEGSA
FT                 LPNVTDFSNWRRLIRVTAWIKRYVNILRVKCRQGAKTWKKTLTVEELKAAE
FT                 KVWVTRCQELCFPEEMEALRRGNCVERSSRLFMLSPIMKDGIICVKSRVAN
FT                 SPEILEDGKFPIILDPKDKWTKLLISWYHHVFGHHGIEMICNEIRQKYWII
FT                 GLKAAVKKAAKECLECRMAGAKQIVPEMAALPEVRVKKPLRPFSYVGVDYF
FT                 GPLXVVNGRKREKRYGALFTCLSTRAVHLEVAFSLSTDDFIMALCRFMCRR
FT                 GEPLEIWSDNGTNFKGAEKELRIALKEMDQSRIEDKMVTRGIKWNFIPPGA
FT                 PHMGGAWERLVRSVKTAMHTILKNRNLNDQLLLTVLLEAEASVNSRPLTTV
FT                 SIDKDDPEAITPNCFLLGTTSIKQPPGEFEDXDLTSRKRWKQAQVLANHFW
FT                 SRWVKEYLPSLALRGKWNKXTPDVAVGELVFVADLNQQRNLWTKGVVVEVF
FT                 PQKQDGRVRIVDVKTAAGIIRRPVAKLYRIHGWNSDSKQ"
XX
SQ   Sequence 5820 BP; 1671 A; 1293 C; 1625 G; 1201 T; 30 other;
     agtggtcctt cgagtacaam caacgaacta gtcctgtgga taacagcgat tactgtgaaa        60
     attaatgcca gcgattacaa ggaaaatgtc tgcttcagga gwtamccgtg ctgaagacac       120
     ccagaactcg ccagccgttc cccattccag ggaattgcaa aatctggttt ggccgatgga       180
     caatcaccga ccagcaggtt ctggaagaca agaagatggt ggaaccccta gacaggatga       240
     tcaggcacaa gaaggagctg gaagagctgg agtgttaggt gaccaggagg aacgcccagc       300
     atctgktcag cawcagggaa acgccaacat caccctagaa aggaggtcaa atccaccaag       360
     cagcaacggm agtatctcct ccagatccca ctcaagttca tcttcccgac gatccagaca       420
     agtcactctg ggaaaagaag aaatattggc taagttacgg gaagaacaaa ggcagaatga       480
     ccttcgactc gaagaggaac gtctccgggt cgaacaggac cgtctacgtc ttaggctact       540
     cgagcataag gcaaaggcgg aagaacaacg cttggaggat caaaggaagt tggtcatcca       600
     gcgttacgaa ctggaattgg acgacgacga ggaaggtgat gcaagatccg gtgtccagag       660
     tttacctcca gtgaatccag acgtggaaga gtgggtagca acacagaacc aaggagctca       720
     tgttatccag agggacgtca aaaagagtaa cgtgcattta ccacggccgg gtaatcacgt       780
     agatgaatct cgccctccat ttgacaggaa cttccgggaa aaccacccag ctgtaggata       840
     cgctcaacaa cacaggatac cgtcggagtc agaaggtttc cagaagatgg cagattcaat       900
     tgtctctgca atgaagaata tggtccagtc agcccaacct catcaggaaa tgaagaactt       960
     tgtggcgagg cagtctggag ccaaagattt acccgacttc cacggggacc ccgaagaatg      1020
     gccgactttc tatggaaggt acgagaggtc gaccaaaatg tgtggatttt ccaacgagga      1080
     aaacatcgtc cggctgcaga ggagcctgaa aggtaaggca aaggaaagcg tcgtgtcgat      1140
     gcttgcttct gcatgcaacg tggatgatgt gatggatgtg ctcaggaaac gctttggacg      1200
     ccctgagcaa ataatcaaga agatgctcga aagagcgaag aacgcaccga cgccagtgga      1260
     aggggacttc caatcgatag tggacttctc gatcgcagtg aagaacttct gtgctacagc      1320
     gggatctctc aacctcccgc tgtacctaaa caaccctcag ctgwtggagg aatttaggaa      1380
     gaagttaccg tcaagcctgc agctagagtg ggcaaggttc caaatcagga acggaggaaa      1440
     tgctgacttg ggagacttgt caggattttt ggatgaaatt gccgaagcmg ccgttcttgt      1500
     wtgtgatgat gtgagttcga gaaagcccaa aatgaagaac cagtgtctac tggttactga      1560
     cgtcggatgc ccgctgaagt gcaaagaagc tcacggactg tcaaaatgtc cgaagtttaa      1620
     gaacatgcaa gtgaaagamc gttgggaatg cgtgatgaga gttcgmgtgt gtttttgctg      1680
     cctggagaaa ggccacccta gggacaagtg tccaaagtct ggtccgtgtc cacttgacgg      1740
     atgcaagctc gtgcatcatc aactcctcca cgaagacaga agaaagaaga ctcccgacgg      1800
     tgctcaagat ggtggtcaac ctaacgtttc gtcagtcatc tcgatgcctg ccaggatgcc      1860
     aatcagcaat gtgctgatga aagtagcccc tgtccagttg gtcggaccca agggaagtgt      1920
     catcgtcaac gcttttctcg acgatggatc atcgctgacg atgatagaag aagacatcgc      1980
     caattccctt gggctcgatg gagagaccaa agcattggac ctcaactggc tagggggtaa      2040
     gcacgaccat gatgagatgt ccagacttgt gtcactgaag atacgtggcc tggaagaaaa      2100
     cgaggaattc gagttgcaga acgttaggac gaagaaaaag ttggacctac cagttaagcc      2160
     gatcacagat tacaagaatc tgaagaagtg gactcacttg gaagaagttc cgttcccgaa      2220
     gacactgaac aagagacctt ccatcattat tggatcagac cacagccgcc tgctgttgcc      2280
     gaggaaagcc ttggaaggac cgagcaatgc gccaattgct gtttggacgt accttggttg      2340
     ggtgattcat gggaaggatg gaagaccacc gggaacgaag acaagacacg tctctcttgt      2400
     gaacgtggaa aacgtggatc cagaccaagc wcttcacgac ttggtcaagg agcagttccg      2460
     acttgaagcg cttggagccg tgaactgcaa gaagctgcca cagtcaaagg agaatgagcg      2520
     cgccgacacg ctcatggaga agacatcgcg tcgagttggg gaatcgtggg aaactggaat      2580
     gctgtggaaa acagatggta tcacccttcc agaaagtaag tgtgcagcaa tcagaagact      2640
     gaaaaccctg gagaagcaga tggacaagga cgagccattt gccgagatgt actgtgcgaa      2700
     gatcgaggag tatctccaga aagggttctg cmggaagttg aacccagagg aagctgctgt      2760
     ggacactgga agagtgtggt acttacctca tttcggaagg accaacccca acaaaccagg      2820
     gaaaatacgc cttgtttttg actgtgcagc caaagtagac gggatgagcc tcaatgatgc      2880
     cctgatccaa ggaccggatt tgatgagccc tctcatcaac gtgctgttga agtttcgtca      2940
     acgcgaagtt gccttcagtg gggacataag agacatgttt cacaggatcc wgataaggca      3000
     agaagacgta gctgcactac gtttcttgtg gagggggaaa gaccgaaggc aaccaccgga      3060
     agtctacaca atggatgtga tgatctttgg agctgtgagt tcaccgtatc aagcccaatg      3120
     gatcaagaat aggaatgccg aagawtttga agatcagtat ccagacgcag tcgacgccat      3180
     taagaaccgt cactatgttg atgactacct ggatagctgt gagactgtgg agcaagccat      3240
     ccagaagata atggacgttc gagaagttca tcgccgtggt ggattcgaga taagaggatg      3300
     gctctgcaat aaccaagacg ttttgcgagt tgtagatcca agtgcttcat ccgaagttac      3360
     aacgcttaac gtgaaggagg acaagttgga gcgtgtwctt ggactacact gggacccgaa      3420
     gcttgacgtw ttcaagtttc agacgacctt tcgcgcgatt gatccgatga tcatctcwgg      3480
     agagaagatt cccaccaagm gggaactsct gaagctcatc atgagccttt tcgacccact      3540
     tggcttcatc gcccatctca ccgtacgagg aagaatcctg ctccaggatg tgtggcgcag      3600
     caagattgga tgggacgaaa agttgaaacc ggaattggag ccaaagtgga cttgtttgct      3660
     ggagcaaatt ctgaagattc cagatgctgt tgtaccaaga tgttttgccc cagaagtatc      3720
     aaagtgtgaa gatctccagc tgcatgtgtt ttgtgacgca agtcaacagg gattttccgc      3780
     cgtggcttac cttcgtgcca ctgggagggg aggaaaagta agtgtcaaca tcatgctggc      3840
     gaagtcgaga gtgacaccca tcaagtgtgt atccatcccg cgactggaaa tggaagcagc      3900
     gcttgtcgga gcaaggatta gcgacttcgt caagaagaat tgtgaccttc ccctgaagaa      3960
     gacctacctt tggacagact caaggaatgt gctgtgctgg ataagagcag aagacccatc      4020
     cagattcaag atctacatcg ctcatcgaat tggagagatc ctggacttga cagaagtaga      4080
     agactggagg tgggttccta ccgcggataa tgttgcagat gatgcaacaa gagacacgac      4140
     tcctgctgac gtatcaccaa gttcgmgatg gttcaacgga cctactttcc tgaagaagcc      4200
     agtggaaaat tggcctcaag aaaccgaagt caagttagct gatgcgaaga tggaagatct      4260
     cgagctgaag cgagaatgct gcatggtggt gactgaagga tccgctttgc caaatgtgac      4320
     tgacttcagc aactggagac gcctcatcag agtcacagca tggattaaga ggtatgtgaa      4380
     tattttgcga gtgaagtgta ggcaaggtgc gaagacctgg aagaagacgc tgacagtgga      4440
     ggaactcaaa gctgcagaga aggtatgggt tactcgctgc caggaattgt gctttccaga      4500
     agagatggaa gcactaagaa gaggaaactg cgtggaaagg tcatcaagac ttttcatgct      4560
     atcaccaatc atgaaagacg gcatcatctg cgtgaagagc agagttgcca attctccgga      4620
     aatcctagaa gatggaaagt tccccatcat tttggacccg aaggataagt ggacaaagtt      4680
     gctgatctca tggtaccacc atgtatttgg acatcatgga atcgagatga tctgcaacga      4740
     gatccgacag aagtattgga tcatcggact caaagccgcc gtgaagaaag ctgccaagga      4800
     gtgtctggag tgcaggatgg ctggtgccaa acagattgtt cccgagatgg ctgccttgcc      4860
     ggaagttcgt gtsaagaagc cactccgccc cttctcgtat gtaggcgtgg actactttgg      4920
     wccgttggaw gtcgttaacg gaaggaagcg ggagaagcgt tacggagctc tcttcacttg      4980
     cctgagtact cgtgcagtcc atctggaagt cgcgttctck ctttcaacgg atgacttcat      5040
     catggcccta tgtcgtttca tgtgcaggag aggagaaccg ttggagattt ggagcgacaa      5100
     cggaacgaat ttcaaaggag ccgagaagga gctgcggatc gctttgaagg agatggacca      5160
     gtcgagaatc gaggacaaga tggtgaccag agggatcaag tggaacttca tcccacccgg      5220
     agccccgcat atgggaggag cttgggaacg actagtccga tccgtgaaga ccgccatgca      5280
     caccatcctg aaaaacagga acctgaacga ccaactactg ctgactgttc tactggaagc      5340
     cgaagcctct gtgaacagtc gacccctcac cactgtgtcm atcgacaagg atgacccaga      5400
     ggcaattacg ccaaattgct tcctgcttgg aaccacaagc atcaagcaac ctccgggaga      5460
     gttcgaggat amggatctca cctcaagaaa acgatggaag caagcccaag ttcttgccaa      5520
     tcacttctgg agccgmtggg tcaaggagta cctgccgtca cttgcgctga gaggaaagtg      5580
     gaacaaggak acgcctgatg tcgctgtagg agaactagtg ttcgtggcag acctcaacca      5640
     gcagaggaac ctgtggacaa aaggagtggt ggtggaggtg ttcccgcaaa agcaggatgg      5700
     acgagtcagg atcgtggatg tsaagactgc cgctggaatc ataaggagac ctgtggccaa      5760
     gctgtaccgg attcatggct ggaatagtga ttctaagcaa tagaatcact gggaggggta      5820
//
ID   BEL-3_SiCu-LTR repbase;    DNA;    INV; 598 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-598
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4963-4963 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 598 BP; 181 A; 82 C; 133 G; 199 T; 3 other;
     tgttggagcc cacaggaagc attagtgtat taaktttagc gttatcatga aaattgtaaa        60
     gcatgagtca tgtgtagtat gcataagcta agcattgtta catgtaaaaa gtagttaaaa       120
     agaattagtc ataattattg taatttaggc aatcgatctt tgaaacttgg tacaaagata       180
     gttaagacat agttaaatgt atgttaaaaa tattaggaaa attgttacac gcgcacatgc       240
     cgaaagttag ggtcaaagtt gagtgctttt agcacgtagt agcatgcgtc atggtagtag       300
     tgtgacgtag ttgccaaggt aggatttgtt tactttgttg tgcgaacgtt acgtcagcgg       360
     caaggagaag cggagagtgc gtgctgttgt tgtgaattgt gcttttagtt ctttcctgta       420
     atcttccgta gaataagtaa ctgtcgagtt ktcttgttga attcgtcagt ttttgtcttt       480
     gccaataata aaaaccgtta aaattataac cgtctgtgaa gttgacttga gtgattttat       540
     gactaatgat aagcgcasca ttttcaccaa tttacggcat ttaacctgag cttcaaca         598
//
ID   BEL-3_SpEx-I repbase;    DNA;    INV; 5854 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5854
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6885-6885 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           338..5548
FT                 /product="BEL-3_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSVTLTSEQQKLINSLEDIFLLLQKTQGNLKKCPKQR
FT                 LTRGYIETKLQTIEEYWRTFNKTHQDLVKCTPKTKRSEVQYFENEDYFVVE
FT                 DLYSCLIGDLRDMLSIFSKSTETQSQSQSFDGLTPPRVKLPRIELPTFNGS
FT                 YDDWPMFRDMFTSLVHNNTSLCNVERLHYLKLSLVGEPKELLKHINVTEDN
FT                 YEQAWNALVQRYGNKRLIVYSLLHKLFSQKKMTSPSAVQIKNLLDTTSQCL
FT                 NNLKNQKIPVEYWDQIIIYILVQKLDVDTHTAWEEDSYKGNSDKLSSWEEL
FT                 KSFLETKYRTLEMVNPTTKKEQTSVKAKSFHSTSPEGKTDKSPTRSCSMCN
FT                 AEHPLFHCKEFCKLEPHERSEFIKKTRLCFNCLTSGHSVKKCRNRMSCRRC
FT                 NRRHHTLLHQPSSFQSDNVKTNQFQTEIETKTAADSVNSEVALTTHFVTGR
FT                 LTALLATALVQVTDEDGHNTVLRALIDQGSQANFVSERAAQLLKAKRTRIK
FT                 GTITGVGAAQTTVNHVIRVELRSRYERDFQLSINAYVMPTRLTSHLPSEKF
FT                 NGSTETWPHLKGLTLADPSFHSPGRVDMLLGVEVCAQILKNEIIKGPPGSP
FT                 CAQNTSLGWILFGRIHAQTSEKSIVVMHHKLDLDELLKSMWEVETDTQGKL
FT                 SKEEEDCERIYEDTYTRNSEGRYIVKLPFNTNNPQSPHGNTKEGALRRLYH
FT                 LERRFLSNEDLKREYTKAINEYKDMEHMEEVPNAERNKPAVYLPHHAVVKE
FT                 ESETTKVRPVFDASHKGSNNIALNEELLVGPQLQDDMRSLVMRWRLKRIAF
FT                 VADIQKMYRQILVSKEDADYQRIVWRNNSDEPVKEYRLLRVTFGTACAPYL
FT                 AVKTLHQVAKDEGKNHPQAAAIIRQDFYMDDLMSGQDTVLEAVAIAKDIKA
FT                 ILRRGGFILQKWASNNSDFLREFHPAELSSHVNIDIKLDGLIKTLGLSWNM
FT                 GEDILKYNLKLPPLSETVTKRKILAEVQRLFDPLGWLAPALVPAKIMIQKL
FT                 WLLRVHWDEELSPETKNEWLNIRHSFEDIKSIKLERWLGTTQETLKDVSIH
FT                 GYCDASTKAYGAVAYLRVRGVNGDYQTGIIAAKTKVAPIKALSLPRLELCG
FT                 AVLLSKLLKQISEATRIPKSQIFCWTDSTIVLSWLRGDPNRWQTFVRNRVI
FT                 TILDNVGNKWYHIQSQQNPADVASRGMLAPELRNYELWWRGPEHLTQEKIQ
FT                 TETFISEETDLESKKPINTYLTRDREENSVYQKMECFKNLPELLQAITYAK
FT                 RFLKLRQNQPVDMPITTDELENSLQICIRIVQNVKFHEDIRDLREKNRVKN
FT                 TSRLKTLNPYLDTKMILRVGGRLRNANYLEHDRLHPMVLDDKNPLTLLLVA
FT                 DAHKQTLHGGIQLMLNYLRSRYWILKVKSLVKAYIHKCFVCAKLNARSWTQ
FT                 QMGELPKVRVTPARPFLHSGVDFAGPYDVLMSKGRGAKTNKSYISIFICMS
FT                 TRAVHLELVGDMTSEAFIAAYRRFVSRRGRCSDLWSDQGRNFVGANKSLAE
FT                 AFKEAKFEFGDQMSSLLAADGTQWHFIPAYSPNFGGLWEAGVKSMKYHLKR
FT                 IMNTNLTYEEMTTVLCQVEACLNSRPLCPIIESDLNNLDVLTPGHFLIGEA
FT                 PITIPSPSLKDISQSSLSRWQHCQRILSNFWHRWQSEYLSRLQQRPKWQKL
FT                 QEEFDIGQIVLIKTDGLPPGKWPLGRIVDKHPGPDGITRVYSVKSGTNIVR
FT                 RSISKLCFLPINTSKSN"
XX
SQ   Sequence 5854 BP; 1991 A; 1110 C; 1244 G; 1509 T; 0 other;
     tatggtccaa acgagccgga ttagtaaaaa aatagataag gacgacccgg cgatcggaga        60
     acaaaaggcc gcttacctga gccagttttt tatgtgcatc aagttttatg caagttatta       120
     ataattgaaa cattataact agaaaaacaa tcgattgaag taaaaacgtg tgtgttttta       180
     aaactatcat atcaagaaca tcttagaagc tacattgcag tgagttacgt ggataaacta       240
     gtacctacct ataaacaagt taaactgtga ttgacttcgg attgtaagtt ctgagtatta       300
     aaatattata agaacatttg aatagacaag aataacaatg agtgttacgt taaccagtga       360
     acaacaaaag ttaataaact cgttagaaga tattttttta ctattacaaa agacgcaagg       420
     taatttaaag aaatgtccga agcaaagatt aacgaggggt tatattgaaa ctaaactaca       480
     aactatagaa gaatattggc gaacatttaa taaaacgcat caagatttag tgaaatgtac       540
     acctaagact aaaagaagcg aagttcaata ttttgaaaac gaagattact ttgttgttga       600
     agacttatac tcttgtctaa taggcgatct aagggatatg ctgtcgatat tttcgaagtc       660
     tacagaaact cagagtcaga gtcaatcctt tgatggtttg acgccaccac gtgttaaatt       720
     accacgcatc gaattaccaa cctttaacgg aagctatgat gattggccta tgtttcgaga       780
     tatgttcacg tcgctggtac ataacaacac gtctttatgt aatgttgaaa ggttacatta       840
     cctgaagttg agccttgttg gtgaacctaa agaattattg aaacatatca atgtcaccga       900
     ggataattat gaacaggcat ggaatgcact tgtccaacgg tatggaaaca aacgtttaat       960
     agtttattct ctactccaca aattatttag tcaaaagaaa atgacctctc catcagccgt      1020
     gcaaataaag aatttgttag atacaacctc tcagtgctta aataatttga aaaatcaaaa      1080
     aatacctgtc gagtactggg atcagataat aatttacata ctggtacaaa agttagacgt      1140
     tgatacacac acagcctggg aagaagattc ttacaaggga aattcagaca aactatcaag      1200
     ttgggaagaa cttaaatcat tcctggagac aaaatatcgg acactggaga tggttaaccc      1260
     tacaactaaa aaggagcaga caagtgttaa ggcgaagtca ttccattcca catcaccgga      1320
     ggggaagact gataaatcac caacaaggtc atgcagtatg tgtaacgcgg agcacccttt      1380
     gtttcattgc aaagaatttt gtaagttaga acctcatgaa cgtagtgagt ttattaagaa      1440
     aaccaggtta tgcttcaact gtttgacatc tggacattct gtgaaaaaat gccgcaatcg      1500
     aatgtcctgc cgaagatgca atcgccgcca tcatacattg ttacatcaac ctagtagctt      1560
     tcagtcagac aatgtgaaga cgaatcaatt tcaaacagag atcgaaacaa agacggcggc      1620
     tgacagtgtc aattctgagg tagcattaac tacgcacttt gtgacgggaa gattaacagc      1680
     gttgcttgca accgcattgg tgcaagtgac tgatgaagac ggccacaata cagtgctgcg      1740
     agcgctaata gaccagggct cgcaagcaaa ttttgtaagc gagcgagcag cacagttatt      1800
     aaaagctaag agaacccgaa taaagggaac tattactggc gtcggagcag cgcaaactac      1860
     tgttaatcac gtcataaggg tcgagcttcg ttcaaggtat gagagggact tccagcttag      1920
     catcaatgct tatgtgatgc cgacacgatt gacctcacat ttgccatcag aaaagtttaa      1980
     tggttcaacg gagacctggc cgcacttaaa aggactcacc ctggcagacc caagttttca      2040
     ttcaccaggg cgagtagaca tgctgctagg cgtagaggtt tgtgcacaga ttttaaagaa      2100
     tgagataatc aaaggtcccc ctggctcccc atgtgcacaa aacacaagct taggttggat      2160
     cttatttgga aggattcacg cacaaacatc agaaaaatca atagtagtga tgcatcataa      2220
     gcttgatctc gatgaactgt tgaaatctat gtgggaggtt gaaacagata cacaaggaaa      2280
     acttagcaaa gaggaggaag actgcgagag aatttatgaa gatacataca cgcgaaatag      2340
     tgaagggcga tacatagtca aactgccatt taacacgaat aacccacaat caccgcatgg      2400
     caatacaaag gaaggggctc tgaggagatt ataccatttg gaaagacgtt tcttgagcaa      2460
     tgaagacctg aaaagggaat atactaaagc aattaatgaa tacaaagaca tggaacacat      2520
     ggaagaagtg ccaaatgctg aaagaaataa accagccgta tatctaccgc accatgcggt      2580
     ggtgaaagaa gaaagcgaga ctaccaaagt taggcctgta tttgatgcct ctcacaaggg      2640
     ctcaaataac atagcactaa acgaagaatt actagtagga ccgcaactac aggatgatat      2700
     gagatcactc gttatgagat ggcgcctgaa aagaatagca tttgtagccg atattcagaa      2760
     aatgtatcga cagatacttg tgtcaaaaga ggatgccgat tatcaaagga ttgtctggcg      2820
     caacaactct gatgaacctg tgaaggaata tcggcttcta cgagtcacct ttggcacggc      2880
     atgcgcaccc taccttgccg tcaagactct gcaccaggtg gcaaaagatg aaggcaagaa      2940
     tcatccccaa gcagcagcca ttatcagaca ggacttttac atggatgatc taatgtccgg      3000
     tcaagatacg gtactcgagg cagttgctat agctaaggac ataaaggcaa ttctgcgcag      3060
     aggtggtttc atcctacaaa aatgggcgtc aaacaactcg gatttcctaa gagaatttca      3120
     tccagctgag ctcagctctc atgtcaatat cgatatcaag ttagatggct tgataaaaac      3180
     actggggtta tcctggaata tgggagaaga tatacttaaa tacaacctca aactaccacc      3240
     cttatcagaa acagtcacaa agaggaaaat attggccgag gttcaacgtc tttttgatcc      3300
     tctgggatgg ttggctccag ctctggtacc tgcaaaaata atgattcaga aattatggct      3360
     tctacgggtc cactgggatg aagaactctc acctgaaact aaaaacgaat ggttaaatat      3420
     aagacacagt tttgaagata tcaaatctat taaattagag agatggctag gaacaacaca      3480
     agaaacgtta aaggatgttt ctattcacgg ttattgtgac gcttcaacta aagcgtatgg      3540
     agctgttgct tacctgaggg ttcgaggagt caacggagac tatcagaccg gaatcatcgc      3600
     cgctaaaaca aaggtggctc ctatcaaggc actatccctc ccacggctgg aattatgtgg      3660
     agcagtcctc ctgtctaagt tgctaaaaca aatcagtgag gcgacacgca tccccaagag      3720
     tcagatattt tgttggactg attctacaat agtgttgtca tggctacgag gagatccaaa      3780
     tagatggcaa acattcgtaa gaaatagagt gataaccata cttgataacg ttggaaacaa      3840
     atggtaccac atacaatcac aacaaaatcc agctgatgtc gcatcgagag gaatgttagc      3900
     ccctgaatta agaaactacg aactctggtg gcgcggtcca gaacatctga cacaagaaaa      3960
     aatacaaaca gaaacattca ttagtgaaga aacagatcta gaaagtaaaa aacctattaa      4020
     tacttacctc acaagagatc gcgaagaaaa ttccgtgtat caaaaaatgg aatgtttcaa      4080
     aaacttacct gagttactgc aagctatcac gtatgctaaa agatttctga agttgagaca      4140
     aaatcaacct gtggatatgc caataactac tgatgaactt gaaaactcgc tgcagatctg      4200
     tataagaata gtgcaaaatg ttaaattcca cgaagacatc agagacttga gagagaagaa      4260
     tagagtaaaa aatacaagtc gtttgaagac cctaaaccct tatctggata ctaaaatgat      4320
     actcagggtg ggcggtcgat tacgaaacgc taattattta gaacacgacc gtctgcatcc      4380
     tatggtctta gatgacaaaa atccacttac cttgttacta gtagctgatg ctcacaaaca      4440
     gacactgcac ggcggaatac agttaatgct aaattacctg aggtccagat actggatttt      4500
     gaaagttaag agtttggtaa aggcatacat tcataaatgc tttgtctgtg ccaagctcaa      4560
     tgcaagatct tggacacaac aaatgggcga gttaccgaag gtacgagtga cccccgcacg      4620
     gccctttctt cacagtggcg ttgattttgc tggaccttat gatgttctta tgtccaaagg      4680
     cagaggtgca aaaacaaaca agtcctacat ctccatcttc atatgcatgt cgacaagggc      4740
     tgttcattta gagctcgtag gagacatgac gtcagaagcc tttatcgcag cctatcggcg      4800
     ctttgtatcg cgtcgtggaa gatgcagtga tttgtggagt gatcagggaa gaaatttcgt      4860
     aggggcgaat aagtcacttg ctgaggcgtt caaagaggca aaatttgaat ttggagatca      4920
     gatgtccagt ctactagcag ctgacggcac tcaatggcat ttcatacctg cctatagccc      4980
     aaattttgga ggcctttggg aggcgggagt gaaatccatg aaataccacc tcaaacgcat      5040
     aatgaatacg aatctgacat acgaagagat gaccaccgta ttatgtcaag tggaagcatg      5100
     tctaaattcc cgtccactgt gcccaattat tgagtcagat ttgaacaacc tggatgtact      5160
     tacacctggc catttcctca ttggagaggc tccaattact ataccctcac cgagcctgaa      5220
     ggatatctcc cagtcaagct tatcacggtg gcaacattgt caacggatac tgtcgaactt      5280
     ttggcatcgc tggcagagtg agtatctttc aagacttcag caaagaccaa agtggcaaaa      5340
     attacaagaa gaatttgaca ttggccagat tgttcttatc aaaacagacg gattgccacc      5400
     tggcaagtgg ccattaggac gaattgtgga caaacaccca ggaccggatg gaatcactag      5460
     ggtctatagc gtgaaaagtg gtacgaatat tgtaagaagg tcaatttcca aactatgttt      5520
     tctacccatc aatactagta aaagtaatta attgcatgtg tttgtaatca ttaagaataa      5580
     ttatttgttt aattttcatt caagttcttt aataatttta tgataatatt gtaacttaga      5640
     agatgcaggc atagttgtag tcgttacaca gactcccaat ttgttttgta ttgtaaaact      5700
     tatgttgtag tctatttttg aacggcatat tgtttatctg ttagttaagt atttaattaa      5760
     tatttgatga acataatgtc tgcatgtttg aatgttagtg aagttaatta atgttaatcg      5820
     taaaaggaat taaaatccct tttggtgggc ggta                                  5854
//
ID   BEL-3_SpEx-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-130
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6874-6874 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 130 BP; 47 A; 25 C; 18 G; 40 T; 0 other;
     tgtgtgtaat aaatcgttga tcgtctgtct tgttcattag aatagtaccg aataaaccat        60
     catactgcaa agacgtgtgt taatttctac aaagtcctac aaacaatact gaaccttaat       120
     caaatcaaca                                                              130
//
ID   BEL-3_TrNi-I repbase;    DNA;    INV; 5999 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5999
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1028-1028 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..5840
FT                 /product="BEL-3_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEAMYKLQNDKRVLIEKAQINFKKAPKDRITKIYVET
FT                 RLESLEALWKEFSSTHNNIVQNASDVQRKSDKYFVDDIYDITEELYIFHKI
FT                 QLKEVLNKFGYYSSDPKSKTNDHSTSNSVKLPKICIPKFSGNYAEWTTFKD
FT                 LFTSLVHKNDTLEDVQKMHYLKGLLSGEAEQLVRHIAVTSDNYKECWSLLH
FT                 SRYNNKRFLSNCLLKRLLSQANIIESSSSIKGLLDTTMECLNGLKNLGIDI
FT                 STWDIIIIHIISSKLDFESRKQWETKLSSKDELPVLLEFKDFLEARFRALE
FT                 FLNAGTNKPTASVIKKATTHHVISSDNKPNEVTCPFCEEGHKIAHCKKFAK
FT                 ESYEARHNFVQTRRLCFNCLNSNHSIKFCRHNGSCRICKRRHHSLLHPQSV
FT                 SNSAVPNENSHIATEVKSAVSRVQASLSEDEPSPSNLVSYFSKGSLPKQVL
FT                 LATALVEAQTRSGSTQLLRVLLDQGSQASFIAESAVQLLGLKKTPVKTVIS
FT                 GIGGEKSAFASKYAVTVTIHSRLDPSFSIQVHAFVLGSITSILPSKKLEVF
FT                 SWPELTQITLADPDFHTPSKIDILLGAEIYGQVLREGLIKSSPNAPIAQNT
FT                 VLGWILSGQISTSDDPIHCHHVIHSNSDQADDNALLRQFWEIESVIPDQKI
FT                 LSDEEQRCENIFAQTTHRDKEGRYVVNLPFRDQDPQCQYGSSRDLAIRRFH
FT                 LLENKFKRNPEVKARYSEVFQEYIDLGHMEPVPSDELNNISAVYLPHHAVV
FT                 REDKTTTKVRIVFDASMKGLNGVSLNDDLMVGPRLQPPLRHIIMRWRMHPI
FT                 SLCADIVKMYRQVKVSSEHAEFQRVVWRDDPESVIKEYKLVRVTFGTAAAP
FT                 YLAVKSLQQVAIDEGGSYPDVSEIIKNDFYVDDLMTGCQTVDQGLHLHERL
FT                 TEVLTKGQFPLQKWVSSCNELNERIQGHAERTKQKEEQERDIKLDSVVKIL
FT                 GISWDRQSDECKYSVQLPPQQFPVTKRRVISDIARLFDPLGWVAPCIIISK
FT                 IFIQKLWLSGLDWDAELTPDLLSEWETYRASLVETNKISIPRWINTKADDS
FT                 LMELHGFCDASIAAYAAVVYVRTIDAEGKIHVNLITARTKVAPVKQQSVPR
FT                 LELMGAVLLSELIIEVARVMKISPPHIRAWTDSSIVLAWLSKHPSHWTTFV
FT                 GNRVSTILSRIDNSHWAHVQSTHNPADLASRGLTPQELACSSLWSQGPPWL
FT                 HEETIEYSRPKSIVTNTEKRTIKVHVATETQQEVPVWTKYSTLQRLVRVIA
FT                 YCRRVLRWKDQGGQRHDKYLTPEEIQDATKTCIRHVQRQEFDEEMKDIRMK
FT                 GSVKPKSKLRCLCPVIDDEGILRVKGRIQNANLDEAVKHPIILPSNRHFTD
FT                 LVIDEAHKMTLHGGPTLMLSHLRTKYWILSAKNKVKAYVRKCVKCKRYSAS
FT                 TQTPFMGQLPKSRVTPARPFYHTGVDFAGPINLRTSKGRGHQSHKGYICVF
FT                 VCMATKAIHLEVISDLTAHGFIAGFKRFVARRGFVADIWSDNGTNFVGASR
FT                 ELRHLVAAEKSSVAAEIREWLGNNSTSWHFIPPHSPNFGGLWEAGVKSTKF
FT                 HLKRVIGNSTLTYEEMSTLLSQVEACLNSRPLSMLSDNSSDPTPLTPGHFL
FT                 IGEPLIAVPERNYEHSNISNLRRWQVTQRMLQDFWRRWSAEYLVQLLQRYK
FT                 WTKHIPEPNIGDVVLIKEDNLPPARWLLGKVVDRHPGLDKVTRVVTLRCNG
FT                 SLIKRPTSKLCILPVAK"
XX
SQ   Sequence 5999 BP; 1833 A; 1149 C; 1337 G; 1680 T; 0 other;
     tggtcctatc gagtcggata aagtgaacta gaagtgagtg atcagtgccg aagtgtttga        60
     agtgaatctc ggtgtggaga ccagggtgga tcgccgtgaa gcgccgctca cccaagctag       120
     tgtgcaagag tggagtaagc agtggtgacc agtggtgtgc agccggggag tgtggaccag       180
     cagccggcgc agggtggcct gaactggaca gggccagtgg agcggagttg gcgcagggtt       240
     gctggacgtc atcagcacca gcagaggagg tgaaacctgt gcgatagcgc agcaggcagc       300
     ccgttcttgg ggctacgcag tcatcacgga gttggagtca gcgctagtgc cagtgtggtt       360
     tgttaaagac taagtcgtga gtactatcta tttgctaatg tgcaagtttc aagatagaag       420
     aaagtagtct tctaaaatta ttggacttaa taattttttc agtatcgtgg atatctttag       480
     tataaattct aggatattac tatttgtgtg ctgattgata tttgtgtctg ttattattag       540
     tggaaatttg tctttggtgg ttattttatc ttagtcgaaa ttttaacatt gaattatttc       600
     aattatttgt tgtttgaaca ttcaaagtca tggaggctat gtataaattg caaaatgata       660
     aaagggttct tatagaaaaa gctcagataa actttaaaaa ggcgcctaaa gatcgaataa       720
     ccaaaatata tgttgaaact agattagaat cacttgaagc tttgtggaag gaattttcat       780
     caactcataa taacatagtg cagaatgctt cagatgttca gcgaaaatct gataaatatt       840
     ttgtggatga tatttatgat attaccgaag aactgtacat tttccacaaa attcaattga       900
     aagaggtttt aaataaattt ggttattata gttcagatcc gaagtcaaag acaaatgacc       960
     actcaacatc taacagtgtt aagttaccaa aaatatgcat tccaaagttt tctggtaact      1020
     atgcggagtg gacaacattt aaagatttat tcacatcgtt agtacacaaa aatgatactt      1080
     tagaagatgt tcaaaaaatg cattatttaa aaggtttatt gtcgggagaa gcagaacaac      1140
     ttgtcaggca tattgcagtc acttcagaca attataaaga atgttggtcg ttgcttcaca      1200
     gtagatataa taataagcga tttctctcca attgcttgtt aaagcgctta ttaagtcagg      1260
     ctaatataat agagtcctca agtagcatta agggtttact agacacaact atggaatgtc      1320
     tgaatggtct gaaaaatcta ggaattgaca tcagtacgtg ggacatcata atcattcaca      1380
     ttattagctc aaagttagat tttgaatctc gaaaacagtg ggaaactaaa ttgagttcta      1440
     aggatgagtt acccgtactt ttggaattca aagatttttt ggaagccaga ttccgggccc      1500
     tcgagttttt gaatgccggg acaaacaaac ctactgctag tgttattaag aaagcaacaa      1560
     cgcaccatgt cattagtagt gataataaac ctaacgaagt gacttgtcca ttctgcgagg      1620
     aaggtcataa aattgcacat tgcaaaaagt ttgcaaagga gagttatgaa gctcgtcata      1680
     actttgtaca aaccaggcgt ttatgcttca attgtttaaa ctccaaccac tctattaagt      1740
     tttgtcgtca taatggctca tgtcgtatat gtaagcgaag acatcactca ctactacatc      1800
     ctcagtcggt ctcaaactca gccgtcccta atgaaaactc ccacatagca actgaagtta      1860
     aatcagcggt atccagagtt caggcatcgc tttcagaaga tgaaccgtca ccctctaatt      1920
     tagtatcata tttttcaaaa gggtctttac ctaaacaagt tttgttagct actgctcttg      1980
     tcgaagcaca gacaagaagt ggctctactc aactgctgag agtgctatta gatcaaggat      2040
     ctcaggcatc attcatagca gaatcagcag tgcagcttct aggactaaaa aagactccag      2100
     tgaagacggt aatatcagga ataggcggcg agaagagcgc gtttgcctct aagtatgcag      2160
     tcacagtgac tattcactca cgcctagacc ctagttttag tatccaagtg catgcttttg      2220
     ttttaggcag cataacatcg attttaccat ctaaaaaatt agaggtgttc agttggccgg      2280
     agctgacaca gattacatta gcggatccag attttcacac accaagtaag atagacatct      2340
     tactaggtgc tgaaatatat ggccaagttc tgagagaagg tttaattaag agttccccaa      2400
     acgcacctat cgctcagaat actgtacttg gttggatcct ctctggacaa atctcaacaa      2460
     gtgatgaccc tattcattgt catcatgtca ttcacagcaa ctcagatcag gctgatgaca      2520
     acgcactttt gcgacagttt tgggaaatag agtctgtcat acctgatcag aaaatacttt      2580
     ctgatgagga gcaacgttgt gagaacattt ttgctcaaac tactcaccgt gataaagagg      2640
     gtcggtatgt agttaatctt cccttccgcg atcaagatcc gcaatgtcaa tacggaagtt      2700
     ccagagatct cgcaataaga agattccatc tgcttgaaaa taagttcaag agaaatccag      2760
     aagtcaaagc tcgatattct gaagtctttc aagagtacat cgaccttggt cacatggagc      2820
     ctgtacctag tgatgagctt aacaatattt cagctgttta tttaccgcat cacgccgtgg      2880
     tacgtgaaga caaaacaaca accaaggttc gaatagtgtt cgacgcttca atgaaaggtc      2940
     taaatggagt gtcacttaac gatgacctca tggtaggccc aaggttacaa ccgccgttac      3000
     gtcatatcat tatgagatgg agaatgcatc ccataagtct ctgtgctgac attgtaaaaa      3060
     tgtacagaca ggtgaaggtc tcttctgaac atgcggaatt tcagagagta gtgtggcgtg      3120
     atgatccgga atctgtaata aaggaatata aattagtaag agttaccttt ggtacagcag      3180
     cagctcctta ccttgcagtg aaatcattgc agcaagtagc aatcgacgaa ggtggaagtt      3240
     accctgacgt atctgaaatt ataaaaaatg acttttacgt cgatgattta atgacaggtt      3300
     gtcagacagt tgatcaagga ttacatctac atgaaagatt aacagaagta ctcaccaaag      3360
     gtcaatttcc actacagaaa tgggtaagca gttgcaatga attgaacgag agaattcaag      3420
     gtcatgctga aaggacaaag cagaaggaag agcaggaaag ggatatcaag ctggactcag      3480
     tggtgaaaat tttaggaatt tcatgggatc gtcagagtga tgaatgtaaa tattcagtgc      3540
     aacttcctcc acagcagttt ccagttacca aaagaagagt aatctccgac atcgcccggc      3600
     tattcgatcc tcttggatgg gtcgcaccct gcatcattat ctcgaagatc ttcatccaaa      3660
     agctctggct ttctggtcta gactgggatg cagaattaac tccagatctt cttagcgaat      3720
     gggaaactta ccgtgcaagc cttgtagaga cgaataagat cagcattccg agatggatta      3780
     atacgaaagc cgacgactca ttgatggagt tacatggatt ttgcgacgcg tcaattgccg      3840
     cttatgctgc tgtagtgtat gtcagaacca ttgatgccga aggaaaaatt catgttaatt      3900
     taattactgc tcgaactaaa gttgcaccgg ttaagcagca gtcagttccg cgtttggagt      3960
     taatgggagc agtcttactc tctgaactta ttattgaagt cgctagggtg atgaagatat      4020
     cacctcctca tatacgcgct tggactgatt catcaatcgt gttagcatgg ctcagtaaac      4080
     atccaagtca ttggactact ttcgttggaa accgagtctc cacgattctt tctcgcattg      4140
     acaactcaca ttgggcgcat gtccaatcaa cgcataatcc tgcagatctt gcatccagag      4200
     gtttgacacc acaggaactt gcatgtagct cactgtggag tcaaggacca ccgtggcttc      4260
     atgaagagac aattgaatac tcaagaccaa agtcaattgt cactaacacg gagaaacgaa      4320
     caatcaaggt gcacgtcgcg actgaaactc aacaggaagt tcctgtatgg acaaagtatt      4380
     ccactctcca aaggttagtg cgggtgattg catattgtag aagagtcttg agatggaagg      4440
     atcaaggtgg ccaaagacat gacaagtatt taactcctga agaaatacaa gacgcaacaa      4500
     aaacatgtat aagacatgtt cagaggcaag agtttgatga agaaatgaag gatattagaa      4560
     tgaaaggaag cgtgaaacct aaaagcaaac tgagatgtct ctgtccagtt attgatgatg      4620
     aaggtattct tcgtgttaaa ggacgtattc aaaatgccaa tttggatgag gctgtcaaac      4680
     accccatcat cttgccatct aacagacatt tcaccgattt agtaattgat gaagcccata      4740
     aaatgacttt gcatggagga ccaacactaa tgctgagtca tttgcgtaca aagtattgga      4800
     tactgtcagc caagaataag gttaaggctt atgtccgcaa atgtgttaag tgtaagcggt      4860
     actcggcatc tactcaaacc ccgtttatgg gtcaattgcc gaaaagtcga gtcactcccg      4920
     ctagaccgtt ctaccataca ggtgtagatt ttgctggccc catcaacctt agaacatcaa      4980
     agggtcgagg tcaccaatcg cacaagggtt acatttgcgt atttgtatgc atggcaacca      5040
     aggccattca tttagaagtc attagtgact tgacagcaca cggctttata gccggcttca      5100
     aacgatttgt ggctcgtcgc ggttttgtcg cagacatttg gagcgacaac ggtacgaatt      5160
     tcgttggtgc ttcccgggag cttagacatt tagttgcagc ggagaagtcg tccgtagctg      5220
     cagaaattag agagtggttg ggcaataaca gcacctcctg gcactttatt ccacctcatt      5280
     ccccgaattt cggtggtttg tgggaagccg gagtgaagtc aacgaagttc cacctgaaac      5340
     gcgtgatagg taattcaaca cttacttacg aagaaatgtc tacactgttg tctcaagtag      5400
     aagcttgcct caattccagg ccgttatcaa tgttgtctga caattcctca gatcctacgc      5460
     ctttaacacc tggtcatttt ctgattggtg agcctctgat agcggttcct gaacggaatt      5520
     atgaacactc aaacatcagt aacctgagac gttggcaggt tactcaacgc atgttgcaag      5580
     atttttggag acggtggtct gctgagtact tggttcagtt gttacagcgt tataaatgga      5640
     caaaacatat tccagaaccc aatattggag atgtagtttt gatcaaggag gataatttgc      5700
     ctcctgcccg ttggctttta ggtaaggttg tagacagaca ccctggtttg gacaaggtta      5760
     caagagtagt aactctcagg tgtaacggat cacttattaa aagacctaca tcaaaattat      5820
     gtatcttgcc tgtcgctaaa tgatgtgatt tcatttcatg ttagttaagt ttcacgttac      5880
     gataatttta ggatttaaga tgtttagtta ttatttagat ttgcccctga cctcatggtg      5940
     ggtggtatct atgcaatttg tgaaaggaca taacgctatt atgtccttgg tgggtggca       5999
//
ID   BEL-3_TrNi-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-3_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-270
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1038-1038 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 270 BP; 73 A; 40 C; 48 G; 109 T; 0 other;
     tgtacaagtt ttatgaatgg tttagtgtta cattttcttt acaatatttt aatacatgtt        60
     tttatgacag tttatacata acttatgttg ttgtagtttg atcattattc aaaagatggc       120
     gttatgactg tgacgtcacc tttctgtatc gcggtgttaa gattttcgag caaagaatga       180
     caccgcggct acgtttcatt aaatttgtct tctctggatc ctagtgtttt atttatcaca       240
     agtgacatta gggacgtata caactttaca                                        270
//
ID   BEL-40_AA-I repbase;    DNA;    INV; 5957 BP.
XX
AC   AAGE02018633;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_AA_;
KW   BEL-40_AA-LTR; BEL-40_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5957
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018633; Positions   10789   16745.
XX
CC   Positions [4968-5549] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           534..5933
FT                 /product="BEL-40_AA-I_1p"
FT                 /translation="MPPVTRSKQAEEKTANQQQQSQDSVSVADTSGSFYGF
FT                 AEWEAEMDPETKKEFEKAVRQRNQVRMKLVRINRTLASNQEIGLAQLNVLS
FT                 KGLSATYAEFSQLHTNIVGLVPDEAMEEQEQEYADYEEMHYAASNVVEALI
FT                 LAAKPAAIPPASATAPQVVIQQQPLKAPIPTFDGGYAAWPKFKAIFQDLME
FT                 NSGDSDAIKLYHLDKALIGEAAGVLDTKVLSEGDYDHAWEILTDRFENERV
FT                 IVETHIRGLLSLKKMTSETHKELRALLNEATRHVESLRYLEQEMTGVSEHI
FT                 IVYLIISALDKSTRKAWESTQKKGQLPKYSQTIDFLKSRCQILENCDAAFP
FT                 TTNPTVKPRQFQQLSKQSQKSHAVSTTISQACEICGGDHRNIQCTALDKLS
FT                 ASQKQEKVRAAGVCFNCLRKGHRSRECPSDKSCRKCQRRHHTLLHDDGAPI
FT                 QVTKSSVSLPAESVVNLPPVPAAPVQPKSGQMNPPVDQPVSTTCSSNFAQS
FT                 SKTVLLLTAVVQVFDKRNQPFPCRVLLDSGSQVNFVTEELANRLGLPKKPA
FT                 NVPITGINALRTLARDKVTLRIRSRVSSFQASLECLVTPKVTGTIPSSKIN
FT                 INHWDIPDGVVLADPEFHTPDKVDLLIGAELFFDILKPSQLNLADNLPMLR
FT                 DTHFGWIVSGVIVEPQVTNVSVQQSNHATVEDVERMMQQFWQIEEVPDVPK
FT                 LSCEELACEAHFLSTYQRDEDGRFIVKLPFKQNINQLDDCRALALKRFLML
FT                 EKRLVRNPELQTQYVEFLREYEALGHCHEVRETDDPPNQLAYYMPHHAVLR
FT                 PSSSSTKCRVVFDASAKSSASELSLNEVLQVGPVVQNDLHFIVLRFRKFKI
FT                 AFSGDVSKMYRQVLHAKQDRRFLRIFWRPHPLQPLRVLELSTVTYGTASAP
FT                 FLATRCLVQLVEEDGDAFPIASRIVKEETYMDDVLSGADSVEEAIEAQRQL
FT                 KQLLELGGFPIHKWCSNSEEFLEHIPEEDREQKKPLEERGVNEAIKVLGLL
FT                 WDPSADTLFIANHPKATTAADQQRVTKRMMYSEIAKFFDPLGLVSPVIVLA
FT                 KLLAQRLWQLKIGWDDPVDEATAQEWQELQTSLSHLHQIDIPRCVTFNEVI
FT                 AYELHGFSDASTVAYGACVYLRSLFADGSAKLRLLTSKSKLAPLHDLSIPR
FT                 KELCAALLLTRLVQKVLPALDMTFREIVLWCDSTIVLAWIRKPLNQLQLFV
FT                 RNRIAVIQENTGDYRWEYVRSLRNPADIVSRGQLPETLKNNQLWWNGPDFL
FT                 QRVEYDIDLPQFVPDDQLPELKGVIASPAVSIEPFPFFSRFSSFRTIQRIM
FT                 GYVLRFVNNCRNPRNQRVSSRHLTVGELRRSTEAILHVIQLVHLADEIKRV
FT                 NANEPCKRLANLRPIYSDGLLRVGGRLDRSLLPFENRHPIILPDKDPVVRL
FT                 LVQKMHIELLHVGQTGLMNALRQRYWLLNARSTIRSITRTCVRCFRVNPSN
FT                 TSQLMGNLPAARVVPSPPFAVTGVDYAGPFIIKQGARRPALIKAYVSVYVC
FT                 MTTKAVHLEAVSDLSTDAFLASLKRFIGRRGMVQQLHSDNATNFRGAHHEL
FT                 NELHRQFQDQQSVSTIEDFCRSREIEWHFIPPDAPEFGGLWEAAVKSAKTH
FT                 LKRIVGNVKLTFEELSTVLVEIEAVLNSRPLFTISNDPADPLVITPAHYLI
FT                 GRPLTAMAEPSLENVNATRLTRWQHLQLMREHFWRAWSREYLNTLQPRKKN
FT                 LRTVPNIRKGMVVLLHDRNQPPLYWKMGRVTAVYPGDDGLVRAVDVYSGGS
FT                 TFRRPINKLSVLPIEDNQPGSDQPIRKDC"
XX
SQ   Sequence 5957 BP; 1479 A; 1653 C; 1560 G; 1265 T; 0 other;
     tctggtcctt cgaaccggat cactagtgcc gtgtagtgat ttcttgtgaa gattctgccg        60
     gatttgaccg ccggccgagt ggtaaatccg gagaagaaaa acccgtgaaa atccttcctg       120
     cattgtgccg ccgcccgagt ggcgcaagcg aagaaaaagt gttgtgacga tccagccgga       180
     tcgagccgtc gtccgcccgc gtcgtcggcg tgcgaaagtg aaaaagtttg cacacgctgt       240
     gcatgtccaa acgtgtttgt gcgagacgag ctacgcgaaa ttggaacaaa gtggaaagtg       300
     aaccaaaaca agattgctcc ctctgctgtg agtgcccgag caaaaacttt gaactgaaaa       360
     actgcgtcgc aagtttcgac cgaaaagttt tcgcgcgttc gagaaaaagt gtgcacaaat       420
     tggtgcgctg cgcaaaagtg ttttcgcgac gagttaaatt tcgaaacgcg tccgaaagtg       480
     tttgaactgt gcgtgatcct gaataagaag agcgcgaaga aaaacagtgc taaatgccgc       540
     ctgtgacgcg gtcgaagcaa gccgaagaaa agaccgctaa tcagcagcag cagagccaag       600
     attcggtatc cgttgccgat acttccggat cgttttacgg attcgctgag tgggaagcag       660
     aaatggatcc agaaaccaag aaggagttcg agaaggccgt aaggcagcgc aaccaagtga       720
     ggatgaagct ggtaagaatt aaccggacgc tggccagcaa tcaagaaatt ggattggcac       780
     aactgaatgt gctttccaaa ggactttctg ccacctacgc cgagttcagt caactccata       840
     ccaacattgt ggggctggta ccggacgaag cgatggagga gcaagaacag gaatacgcgg       900
     attacgagga gatgcactat gccgcgtcca acgtcgtcga agcgctgatt ttggcagcaa       960
     agccagctgc tatccctcca gccagtgcaa cagcacctca agtggtcatc cagcagcaac      1020
     cattgaaggc accgattccg acgttcgatg ggggctatgc cgcctggcct aagttcaagg      1080
     ccatcttcca agacttgatg gagaactcgg gggatagtga cgcaattaaa ctctatcacc      1140
     tcgacaaggc actcatcggc gaggcagcag gtgtcctgga tacgaaggtc ctcagtgaag      1200
     gagattacga tcatgcctgg gaaattctga cggaccgctt cgagaatgaa cgcgtgattg      1260
     tggaaactca cattcgtggg ttgttgtccc tcaagaagat gacctcggag acccacaaag      1320
     agcttcgagc gctcctgaat gaagccaccc gtcatgtcga gagcctccgc tacctcgagc      1380
     aggaaatgac cggagtatcg gaacacatca tcgtgtatct gatcatctca gcgctggaca      1440
     agtcaacccg gaaggcctgg gaaagtaccc agaagaaagg acagcttccc aagtactcgc      1500
     agaccatcga tttcctgaag tccaggtgtc agatcctgga aaactgcgat gcagcgtttc      1560
     caacgacgaa ccccacagtg aagccgaggc aattccagca actttcgaag caatcccaga      1620
     agagccatgc agtttccact actatttcgc aagcgtgcga gatttgtggt ggtgatcatc      1680
     ggaacatcca gtgcaccgca ttggacaagc tgagtgcctc ccagaagcaa gagaaggttc      1740
     gagctgcagg agtttgcttc aactgcctgc gtaaagggca ccgctcccga gagtgtccat      1800
     ccgataagtc gtgccgcaag tgccaacgcc ggcaccacac gctgctccat gatgatgggg      1860
     cacccatcca agtgacgaag tcgagcgttt cccttcccgc ggagtccgtg gtaaacctac      1920
     caccggttcc ggctgctccg gttcaaccga agtcggggca gatgaatcct cctgtggacc      1980
     agcctgtgtc cactacctgt tcgtcgaact tcgcccagtc gtccaagacg gtactgctgc      2040
     ttaccgcagt ggtgcaggtg tttgacaagc gaaatcagcc attcccatgt cgtgtcctgc      2100
     tggacagcgg ctctcaggta aattttgtga ccgaagaatt agcaaatcga ctaggtttac      2160
     cgaagaagcc agctaacgtc ccgattactg gtatcaacgc cttgcgcacc cttgcccgcg      2220
     acaaggtaac cctgagaatt cgatcccgag tatccagctt tcaagccagc ctggagtgcc      2280
     tagtgacacc gaaagtgacg ggcacgattc catcgtccaa gatcaacatc aaccactggg      2340
     acattcctga cggagtggtt ctggccgatc ctgagttcca cacacccgac aaggtggatc      2400
     tactaatcgg cgcggaacta ttcttcgaca ttttgaaacc gagtcagctg aatctagcgg      2460
     acaaccttcc gatgttgcga gacactcact ttgggtggat cgtatccggc gtcatcgtcg      2520
     agcctcaagt cacaaacgtt tccgtccagc aatccaacca cgctaccgtc gaagatgtcg      2580
     agcgaatgat gcagcagttc tggcaaatcg aggaagtgcc agacgttccc aagctttcat      2640
     gcgaggagtt ggcctgcgaa gcccacttct tgtccaccta tcagcgagat gaagatggac      2700
     gattcatcgt gaagctaccg ttcaagcaga atatcaacca gctagacgac tgccgcgctc      2760
     tagcactcaa gaggttcctg atgctggaga agagactcgt ccgcaatcca gaactgcaga      2820
     cgcagtacgt ggagttcctc cgggagtacg aagctcttgg acactgccac gaagtccggg      2880
     aaaccgacga ccctccaaat cagctagcgt attacatgcc gcatcacgcg gtgttacgac      2940
     cttccagctc gagcacgaaa tgtcgtgtcg tgttcgacgc cagcgccaag tcttcagcat      3000
     ccgagctgtc cctgaacgaa gtgctgcagg taggacctgt agtacagaat gatctgcatt      3060
     tcatcgtcct gcgcttccgg aagttcaaga tagcgttctc cggagacgta tccaaaatgt      3120
     accgtcaggt actgcatgcg aaacaagatc gtcgtttcct gcgaatcttt tggagacccc      3180
     acccgttgca accgctgcgg gtcctggagt tgtctaccgt tacctacggt accgcatcgg      3240
     caccattcct agctactagg tgcttggtgc agttggtgga agaagacggc gatgcctttc      3300
     caatcgcctc tcgtatcgtg aaagaggaaa cgtatatgga tgatgtgctc tccggcgcag      3360
     actcggtgga agaggccatc gaagcccagc gacaactgaa gcaactcctg gagctaggag      3420
     gattccccat ccacaagtgg tgctcgaact ccgaagaatt tctcgagcac atccccgaag      3480
     aagatcgcga gcagaagaag ccattggaag aacgaggagt gaacgaagcc atcaaggtgc      3540
     tcggtttgct ctgggacccg agtgctgata ccttgttcat cgccaaccat ccgaaggcca      3600
     cgacagcagc cgaccagcaa cgcgtgacga agagaatgat gtattcggag atcgccaagt      3660
     tcttcgaccc tttgggtttg gtgtcgccgg tcatagtatt ggcgaagctc ctggcacagc      3720
     gactgtggca gctcaagatc ggctgggacg atccggtcga cgaagcaaca gcgcaagagt      3780
     ggcaagaatt gcaaacatcg ttgtcacatt tgcaccaaat cgatatcccg agatgcgtaa      3840
     ccttcaatga agtgattgcg tatgagctgc acgggttctc cgatgcctct accgtggcgt      3900
     acggggcctg tgtctacctg cgaagcttgt ttgccgacgg ttcggcgaaa ctacgactcc      3960
     tcaccagtaa gtccaagttg gctcctctgc atgacctttc cattcctcgg aaagagttgt      4020
     gcgccgctct actgctcacc cggttggtgc aaaaggtgtt accagccctg gacatgacgt      4080
     tccgggaaat tgtgctgtgg tgcgatagta cgattgtcct ggcctggata cgaaagcctc      4140
     tcaaccaact acagttgttc gtacgaaatc gaatcgctgt aatccaagag aataccggag      4200
     actacagatg ggagtacgtt cggtccctgc gaaaccccgc tgatatcgtt tcccgaggcc      4260
     aactaccaga aacactgaag aacaaccagc tttggtggaa tggcccggac ttcctccaaa      4320
     gggtggaata cgacatcgac ttgccgcagt tcgttccaga cgatcagttg cccgaactca      4380
     aaggagtgat agccagtccg gctgtaagta tcgaaccgtt tccatttttc tccaggttca      4440
     gtagcttccg aactattcaa cgtatcatgg ggtacgtgct gcgattcgtc aacaactgcc      4500
     gaaaccctcg caatcagcgc gtatcaagcc gacatctgac cgttggtgaa cttcgtcggt      4560
     caactgaagc catcctccac gtaatccaac tcgttcattt ggcggacgag attaagcgag      4620
     tgaatgccaa cgaaccctgt aagagactcg ccaaccttcg tccgatttac tctgatggcc      4680
     tattgagagt gggcggccgt ttggatcgct cgctgctacc cttcgaaaat cgtcatccca      4740
     tcatcttgcc ggataaggat ccggttgtac gcctgttggt gcaaaagatg cacatcgaat      4800
     tgcttcacgt cgggcagacc ggcctgatga acgccctgcg ccaacgttat tggctcctga      4860
     atgctcgttc taccattcgt tcaatcaccc gtacatgcgt gagatgcttc cgagtcaacc      4920
     caagcaacac cagccagcta atgggcaact tgccggctgc cagagttgta ccatcacctc      4980
     cgttcgccgt caccggcgtg gattacgccg gcccgttcat catcaagcaa ggagcgcgcc      5040
     gtccagcgtt gatcaaggca tacgtctccg tctacgtgtg catgactacc aaggccgtcc      5100
     acctggaagc agtgtcggac ttgagcaccg atgctttcct ggcgtccctt aagcgtttta      5160
     tcggacgacg aggcatggtt caacagctcc actcggataa cgccaccaat ttccgaggag      5220
     cccatcacga gttgaacgag ctccaccgac agtttcaaga ccaacaatca gtatcgacca      5280
     tcgaagactt ctgtcgctcc cgtgagattg agtggcattt catcccgccg gatgcaccgg      5340
     agttcggcgg cctctgggag gccgcagtaa aatctgcgaa gacccatctc aagcgcatcg      5400
     tcggcaacgt caagttaacg ttcgaggaac tgtctaccgt cttggttgag atcgaggcgg      5460
     tattgaactc tcgaccactg ttcaccatct ccaacgaccc tgcggatccg ctggtgatta      5520
     caccggccca ctaccttatc ggccgtccgc tcaccgccat ggccgagcct tccctagaga      5580
     atgtcaacgc aacccgcttg actcgatggc agcatctcca gctcatgcga gaacatttct      5640
     ggcgcgcctg gagccgggaa tacctaaaca cgctgcagcc aaggaagaag aatctccgaa      5700
     ctgtgcccaa catcaggaag ggcatggtag ttctactcca cgatcgaaat caacctccgc      5760
     tctactggaa gatgggccgt gttacagcgg tctaccctgg tgacgatggc ttagtccgag      5820
     ctgtcgacgt ctacagcggt ggttccacct tccgccgccc aatcaacaag ctgtcagtgc      5880
     tacctatcga ggacaaccag cctggttccg accaaccgat acgtaaggat tgttgagtac      5940
     cctcaacggg gggtgta                                                     5957
//
ID   BEL-40_AA-LTR repbase;    DNA;    INV; 449 BP.
XX
AC   AAGE02018633;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_AA_;
KW   BEL-40_AA-I; BEL-40_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-449
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018633; Positions   10340   10788.
XX
SQ   Sequence 449 BP; 108 A; 136 C; 91 G; 114 T; 0 other;
     tgttccgtct cccgacggaa gcgcaaatca tgtaccaccc tattcccatg catacccatc        60
     accaccctat tgccaatcag tgagcgacac gcgttcgtca gcgtggtcga caccgaaacg       120
     tatgtcggtt acattttctc accactttct gctgaagcca accgcagtcc caacggctgc       180
     atcagttcac tttcactcga cgccgagaac gcatcgtttg cgtagaaaca gtaaatcatt       240
     attaaactaa tgtaaagaga agagaataaa gtttgtagtt aagcgtagcc gtccgcgttc       300
     aattccttcg catcccaaga aaagttggcc cttgccaatc ctcccgcgga agtgatcctt       360
     tcgccgcgaa gtgttttgtt ccgccgtgtt ttccccccaa agtgtattac agtccgctgc       420
     ctttcgatcc accctgctgg gctcgaaca                                         449
//
ID   BEL-40_AnFu-I repbase;    DNA;    INV; 5735 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5735
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 705-705 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           251..5518
FT                 /product="BEL-40_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MNHQSVKVTKMDKKIKTAQHQKLIALENIKSLERFTQ
FT                 AFSSDDASQIPEALEGLEQYKQEFFTAVAKLEECDDSSEAIQSCINDRIDM
FT                 EERCRRLKSFLRENQRKDANPLNESTLLANSTLAFGRPNAPNLRLPKIELP
FT                 TFDGDSTKWLSFRDRFVAMIDASPDLPHIAKLQYLLSSLKGDAAVPFEHVA
FT                 LTTENYAVTWASLLKRYDNTRMLIRDYWRKLHFLPGIEAESVDGLTSLVDE
FT                 FTRHVNGLVKLQEPVDSWDTPLSNMLLMKMDNETILAWEKHSVQFKRDKYS
FT                 ELIEFLQDRVQILKSSKSFACAKIAPTKVAGAHRLPASRKSITSAAAMQKN
FT                 ASMSTSPQLQRCPLQCPEPHLLRNCPEFINKEIQQRRDIVKTKGLCWNCLS
FT                 SSHQVKSCRSDYSCRSCRERHHSLLHHASHSSVTVQPKVTLAAQSDDEMVF
FT                 LETAMVYIVDDYGIKHEARALLDSGSMLNFISESLAQKLLTPRTKVNVCVT
FT                 GIGSARQQVKGSITASVRSKDLHFTTPMEFFILDTPIAAIPTKPVDVSSWD
FT                 MPNVTLADPTYHVPGKVDLIIGSDPFWEVHTGRKRSLGAGKPWLVETRFGW
FT                 AVSGNTVQSSPAPRVCHVATSECPLEAIMTRFWESETISDEPALSVEEDIC
FT                 ENHFIANTTRDGSGRYVVSLPHKSNPNIILGASRQIADRRLLAVERRLKAN
FT                 PEMREAYSSFMREYEHLGHMIRLEEPIDESCPHYYLPHHAVVKESSTSTKV
FT                 RVVFDASCKTTSGYSLNDSLLVGPVVQQDLYTIMLRFRSHAIALTADVEKM
FT                 YRQIRHHPADKNFLRIRYRKDPSEPIATFELQTVTYGTASAPFLATRTLKQ
FT                 TAYDHQEQYPRAVVPVLRDFYVDDLLTGTDEISDAIEMQKQISSMLQSAGF
FT                 ALKKWASNNPKALHGIPQEDLALQTCHEWNKSQFVSTLGLIWEPAADVIRF
FT                 RIELPPSASVLTKRLVLSYIAKIFDILGVLGPTIVIAKLFMQQLWSLKENG
FT                 VALGWDSELPLHLQQEWNRFHSSLHSLRELHIPRFVSLPNATTTQLHVFAD
FT                 ASQAAYGACCYFRAENHHGISVNLLTAKSKVVSLTNTHSIARLELCAARLA
FT                 IQLVKRISTSLNTPIIIFCWTDSMTVLYWLKSPPRRWKPFVANRVAQIQQE
FT                 TRIKCWRHVPGVDNPADDISRGLLPDKLLSSHRWWHGPHWLSSKEADWPHN
FT                 PTTEEIVCNDEERATQLVAATSTTNDFGSKYFARFSGYLKLLRTTAYALRY
FT                 LRCLKNSVSSVTAVSRKNTTVAELIALISALSKDELHRAEMCLCKLAQQDS
FT                 FPEDLHAIRSGNEIPRHSRLKWLSPFVDHDGILRVGGRLRNAQITDATKHP
FT                 IVLSSKHPLASLLVCWYHRKLLHAGPQLLLASLRQRFWIIGGRSLVKSIFH
FT                 RCHRCFKSKPSLVRQAAADLPTSRVSPTRPFAVCGVDYCGPVMIKSAIRNR
FT                 SATKAYIAIFVCFSTRAVHIELVNDLTTFAFLAALRRFIARRGLVTEIHSD
FT                 NATTFKGAAHELHRLYQMLKCRNTERAEIFNWCAINEIRWKFIPPRAPHFG
FT                 GLWEAAVRSAKHHIIRTIGTASLTQEGWLTLLAQVEQCLNSRPLVPLSSEP
FT                 TDMEPLTPGHFLVGSNMLAPPQVDCTNTPSNRLKEYELVQKHLQCIWARWY
FT                 PEYLQQLQARAKHISSKPVDLKEGQLVIIKEDNIPPTLWPMGRITKLHPGR
FT                 DNTVRVVTLRTGAGKEIVRAAARLAILPNPNLFEDK"
XX
SQ   Sequence 5735 BP; 1578 A; 1354 C; 1364 G; 1439 T; 0 other;
     tttttggtcc ttcgaaccgg atagatacgg attagtgtgt gaattgtttc tttcttcgct        60
     ctgcatcaag agcatcagta tattcggtac gctccgcatc acgagcaagg tgcaaatcat       120
     cttacgcgcc attccgaatt cgcgcgtgaa agttcattcg ccctacggaa agggcaacgg       180
     tcgaaattgc gccatcgttc aaatttgtgt catcgtgttt ttcggtcctt ttcggtcgta       240
     gttatttttc atgaatcatc agtcagtgaa agtgactaaa atggacaaaa agatcaaaac       300
     tgcccagcat caaaaactaa tcgcgttgga gaacattaaa tcgctggagc ggtttacaca       360
     ggcgttcagc agcgacgatg caagccaaat tccggaggct ttggaggggc tggagcagta       420
     caagcaggag tttttcaccg cagtggcgaa actggaggaa tgcgacgaca gcagtgaggc       480
     gatacaatcc tgtatcaacg acaggatcga tatggaagaa cggtgccggc ggctgaaatc       540
     atttctcaga gagaaccaac ggaaggacgc caacccgcta aacgaatcca ctcttttggc       600
     aaattcaacg cttgcgtttg gacggccaaa cgcacccaat cttcggttgc caaaaatcga       660
     actgccgacg ttcgatgggg attcaacaaa gtggttgtca ttccgcgatc gttttgtcgc       720
     tatgatcgac gcttcacccg acttaccaca cattgcaaaa ttacaatatt tgctttcttc       780
     gttgaagggc gacgcagcgg tgccctttga acatgtggct ttgactaccg agaactacgc       840
     tgtgacgtgg gcgtcacttc ttaagcgtta cgacaataca cggatgctga ttcgcgatta       900
     ttggcggaag cttcatttcc ttccgggaat agaagcagaa agtgtcgacg gtttgacatc       960
     gttggtggat gaattcacgc ggcatgtgaa tggattggtg aaactacaag aaccagtcga      1020
     ttcgtgggac acacctctgt ccaacatgct tctaatgaag atggacaacg aaaccatctt      1080
     agcgtgggaa aaacactccg tgcagtttaa aagggataag tacagtgagc tgattgaatt      1140
     cctgcaggat cgtgttcaaa tattgaaatc gagtaagagc tttgcatgcg caaagattgc      1200
     accgaccaag gtggccggcg cacatcgtct tcctgcatca cggaagtcga tcacgagcgc      1260
     agctgcaatg cagaagaacg catccatgtc tacttcacca caactacaga gatgtccgtt      1320
     gcagtgtccg gaacctcatc tactacgcaa ttgtccggaa ttcatcaaca aggagataca      1380
     acaacgacgt gacatcgtca aaacaaaggg tctatgttgg aactgcctca gcagctcaca      1440
     ccaagtgaaa tcttgtagat cagactactc gtgccgatca tgccgtgaac gtcatcatag      1500
     cctacttcat cacgcttctc attcatccgt aactgttcaa ccgaaagtta ctctggcggc      1560
     tcaatccgac gatgaaatgg tgtttctcga gacggcaatg gtttacatcg tagacgatta      1620
     tggaattaag cacgaggcta gagcgcttct tgattcggga tcgatgttaa actttatatc      1680
     ggaatcattg gctcagaaac tcctcacccc tcgtacgaag gtgaatgtgt gcgttactgg      1740
     catcgggtca gcaaggcagc aggtgaaagg ttcaatcacc gctagtgttc gatctaagga      1800
     cctacacttc accacaccga tggagttttt catccttgac acaccaatcg cagccattcc      1860
     taccaaaccg gtagacgttt cttcatggga tatgccgaac gtgaccctcg ctgatcccac      1920
     ttatcacgtt cctggtaagg tggatctcat catcggcagt gatccattct gggaggttca      1980
     tactggacgt aagcgatcat taggcgcagg caagccgtgg ctagtggaga cccgatttgg      2040
     atgggctgtt tccggaaata cagtgcagtc atcaccagct ccacgtgtat gtcatgttgc      2100
     aacgagcgaa tgtcctttgg aggcaatcat gacacgtttc tgggagagcg aaaccatctc      2160
     cgatgaaccc gctctatctg tggaagaaga catctgtgag aatcatttca tcgctaatac      2220
     aactcgggat ggttcaggaa ggtatgtcgt tagcttgcca cacaagtcta atcccaatat      2280
     cattttagga gcctcaaggc agatagcaga tcgtcgtttg ctagcggtgg aacggcgact      2340
     gaaggctaat cctgaaatga gggaagcata ttcgtcattc atgcgagagt atgaacattt      2400
     gggacacatg ataaggctcg aggagccaat tgatgaatca tgtccacatt actacctacc      2460
     gcaccatgct gttgtaaaag aatccagcac atcgacaaag gttcgtgtag tattcgatgc      2520
     ttcgtgtaag acgacgtcag gttattcctt aaacgattcc ctgctggttg gacctgtcgt      2580
     tcagcaagat ctgtacacta ttatgcttcg atttcggtca catgctattg cgctcacagc      2640
     tgacgttgaa aagatgtacc gtcaaatccg acatcaccct gcagataaaa actttcttcg      2700
     aattcggtac agaaaggatc cgtcagaacc aatagcaacc ttcgagttac aaaccgtaac      2760
     gtatggtacc gcatctgcgc cattcttagc cacacggaca ttgaagcaaa ctgcatacga      2820
     tcatcaggaa cagtatcctc gagcagtcgt tccggtgctt cgagattttt acgttgatga      2880
     tctgttgacg gggacagatg agatatcaga cgcgatcgag atgcagaaac aaatctcatc      2940
     catgttgcag tcagctgggt tcgcgctgaa aaagtgggca tcgaacaatc ctaaggcgct      3000
     tcacgggatc cctcaggagg atttggcatt gcaaacatgc catgaatgga acaaatcgca      3060
     atttgtgtcc actttgggat tgatctggga gccagcagca gacgtaattc ggtttcgcat      3120
     cgaactaccg ccttccgcat cagtgttgac aaagcgcttg gttttatcgt atatcgctaa      3180
     aatattcgac atcctcggag tactcggccc aacgatagtt attgccaaac tatttatgca      3240
     gcagttatgg tcgcttaagg aaaatggtgt tgcactgggt tgggacagtg agctaccatt      3300
     gcatcttcaa caagagtgga acaggtttca ctcatcgcta cattctcttc gtgagttgca      3360
     cattccacgg ttcgtatcgc ttccaaatgc aactaccacc caattacatg tcttcgcgga      3420
     cgcctctcaa gcagcatacg gagcatgttg ctatttccga gcagaaaatc atcacgggat      3480
     ttctgtgaac ctgttgaccg caaagtcaaa ggttgtttca ctaactaaca ctcactcgat      3540
     cgccagactc gagctctgcg ctgcacggtt ggccatacaa ttggttaaga gaatcagtac      3600
     gtcactcaac actcccatca tcatcttctg ttggactgat tcgatgacgg tgttatattg      3660
     gctaaagtca cctccacgtc gctggaagcc atttgtcgcc aacagagtgg cacagatcca      3720
     acaggaaact cggatcaaat gctggagaca cgttcctggg gtggacaatc cagcagatga      3780
     tatatctcgt gggctgcttc cagacaagct actatcttct catcgctggt ggcatgggcc      3840
     acattggtta agtagcaagg aggcagattg gccacataac cctaccacag aagaaatcgt      3900
     ttgcaatgac gaggagagag ctacacaatt ggttgctgca acatctacaa cgaacgattt      3960
     tggcagcaaa tatttcgcac ggttttctgg ctacctgaaa cttcttcgaa cgacggccta      4020
     cgccttgcgc tatcttcgat gcttaaagaa tagcgtatct tcggtaacag cagttagcag      4080
     aaaaaataca acagttgcag aacttatcgc attgatctca gcactatcca aggatgaact      4140
     acatcgcgct gagatgtgct tgtgtaaact tgcgcaacaa gattcgtttc cggaggatct      4200
     tcatgcgata aggagtggta acgagatacc acgacactca cggttaaaat ggttgtcacc      4260
     tttcgttgat catgatggaa tcttgcgtgt tggtggccgg cttcggaacg cgcagattac      4320
     agacgccacg aaacatccga ttgtgctatc gtcgaaacac ccgctcgcat cattactggt      4380
     ttgttggtat catcgcaaac tgttgcatgc tggaccgcaa cttttgctag cttcacttcg      4440
     tcagcgattt tggataatcg gaggccgcag tttagtgaag tctatttttc atcgatgcca      4500
     caggtgtttt aagagtaaac cttcgttggt gagacaagct gccgccgatt tgcctacatc      4560
     tagagtgtca ccgacaaggc cgtttgcagt gtgcggggtt gattattgcg gacccgtaat      4620
     gatcaagtca gccatccgca atcgaagcgc aaccaaagca tacatcgcga tcttcgtatg      4680
     cttttcgacg agagcggtgc acatagaatt ggtcaacgat ctaaccactt ttgcattttt      4740
     agccgcactc cgaagattca tcgctcgcag aggtctggtt acggaaattc actccgacaa      4800
     cgcgactaca tttaaggggg ctgcacacga gctgcatcgt ctgtaccaga tgctgaagtg      4860
     caggaacacg gaacgggcgg aaattttcaa ttggtgcgcg atcaacgaaa tccggtggaa      4920
     gttcattcca ccacgggcgc ctcatttcgg tggactgtgg gaggctgcgg tacggtccgc      4980
     aaaacatcac attatacgga cgattgggac ggcgagcctc acccaagaag gctggttgac      5040
     attgttggcc caggttgagc aatgtcttaa ttctcgacca ttagttccgt tatcgagcga      5100
     gcccactgat atggaaccgt tgacaccggg tcatttctta gtagggtcaa acatgttagc      5160
     accaccacag gttgattgta cgaacactcc gtcaaatcgg ttgaaagaat acgaactcgt      5220
     tcaaaaacac cttcagtgta tatgggcacg gtggtaccca gaatatttgc aacagctaca      5280
     ggcccgtgca aagcatattt catcaaaacc ggtagatctg aaagagggac aactagttat      5340
     tatcaaggaa gacaacatac cacctacctt atggccaatg ggcagaataa cgaaattaca      5400
     cccagggaga gataatacgg ttcgagttgt cactttgaga acaggtgcag ggaaggaaat      5460
     agtacgtgca gcagctagat tagctattct tccgaatcca aatctttttg aagataagta      5520
     gccacaaggg atcgatcggt ttcgatcaaa acaaaacaaa caaaacaagt gtcatacaca      5580
     tacacataca catacacttc acttggcatg agaatcacat tgctagcgat cacacatgat      5640
     aggtttagag cagtgaattg catgtaatca ttacagataa gccaatattg aacttcttag      5700
     attagttaaa gaaatacttt ctttggtggc cggaa                                 5735
//
ID   BEL-40_AnFu-LTR repbase;    DNA;    INV; 294 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-294
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 742-742 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 294 BP; 109 A; 45 C; 59 G; 81 T; 0 other;
     tgttgagatt tatctgaatt aattaaaatt aagttgaaat atttcacgga tatttacatg        60
     caatatagac cttaggtaaa aactgcacta gatgagtaat tatgacaacc gatcgagggc       120
     aatgattaat gaactattag gattaggaaa tgaactcgat gtaaatgaac ttaaggacaa       180
     atgaatacac agtagctaac cgatcatcgc gcgcgttaca cgtattaaaa ggaatccgga       240
     aagattttgc gaaagaaaca atctcgcacg actggtttcg tgaggtttct caca             294
//
ID   BEL-40_CQ-I repbase;    DNA;    INV; 2212 BP.
XX
AC   AAWU01013031;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_CQ_;
KW   BEL-40_CQ-LTR; BEL-40_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 233-233 (2011).
XX
DR   GenBank; AAWU01013031; Positions   10722   12933.
XX
CC   'CTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           277..2160
FT                 /product="BEL-40_CQ-I_1p"
FT                 /translation="MPPKIPRTPLKKTEEDIRQEELDGLVHIREQKVDRIT
FT                 RMKEAITSVPRGGRTAATIRGNQKKLELVNSEFDSVHQRIILLADAKSRGQ
FT                 HDAKQREFEAMYDELIMTLEQWTDDLKPAVAAGTSNALAPAGPQPVVINQP
FT                 LPKIIPTFDGKYESWDRFKIMFKDVVDRSNELPRIKLYHLEKALIGSAQGA
FT                 IDEKTIQDGNYAHAWEILEEQYGDKRRMIDLHIGGLLRVQKLVKESHEELR
FT                 SLVQNFHGHVENLKFLGQEFTGVSEQIAVYILAHALDEDTYKLWEATIKRG
FT                 ELPKYDEAIKFLKSRVSVLERWETTKLAEPKQRERSSHLTSVSEQPYHIAN
FT                 TAVMSHPKFRCDFCNEHHLTFKCTAFNGLPVYQRMAAVRERNLCQNCLRSG
FT                 HHWKECGSQHSCRKCQRRHNTLLHRQPRVSRITGQKQPQSSPASCENPRAF
FT                 NAILPTALVNLSDNENQPVPCRILMDSGSQVNFISEAMADRLKLQTKAASV
FT                 PICGIGASKTVSKQLVSVKLHSRISSFNANVECLIVPKVTGTVPPSPVDIT
FT                 EWPIPVGTQLADPTFHKPDSIDMILGVTMFFRLLKNGQIELDGNQPDLRET
FT                 HLGWVVAGHGGVDDNLQTRFPVNVGVAISA"
XX
SQ   Sequence 2212 BP; 617 A; 597 C; 585 G; 413 T; 0 other;
     ttggtccaat cgacccgaat ttggacatcc ggcgtggatg tggtaaagaa gcccggtgaa        60
     aagtgcgagg caaacgtgcc tcagagaaca agcggacagt tcccgcgaaa agtcgctccg       120
     gtgagagaca cgtagccgcg agtgcaaaag tgcgtttccg gaacattcgc aaacaatcac       180
     gacggaggca aaccggccca atcccgttcg cgagtgtcca aagagcaaag aagaagaacc       240
     taacctaaaa gaaacaaaca gtgaacagtg ctcaaaatgc cgccaaaaat cccacgtact       300
     ccgttgaaga agacggagga agacatccgc caagaagagc tggatggcct ggtccacatc       360
     agagagcaga aggtggacag gatcacccgg atgaaagaag cgatcaccag tgtgcccaga       420
     ggagggcgca cagccgcgac gataagagga aaccagaaga agcttgagtt ggttaacagt       480
     gagttcgaca gcgtccatca gcggatcatc ctcctggcgg atgcaaagtc tcgaggtcag       540
     catgatgcca agcagcgaga gttcgaagcc atgtacgatg agctcatcat gacccttgag       600
     cagtggaccg atgacctcaa acccgccgtc gcagcaggaa cgtccaacgc cctcgcgcca       660
     gccggccctc aaccggtggt catcaaccag cctctgccca aaatcatccc aacgttcgac       720
     ggcaagtatg agtcttggga cagattcaag atcatgttca aggacgttgt ggaccggtca       780
     aacgaacttc ccagaatcaa gctgtatcac ctagagaagg ccttgattgg aagcgctcag       840
     ggtgcgatcg acgaaaaaac gatccaggac ggcaattacg ctcatgcctg ggagattttg       900
     gaggagcagt acggggacaa gcgacggatg atcgatctgc acatcggtgg tttgctacga       960
     gtccagaagc tggtcaaaga gagccacgag gagttgaggt ccctagtgca gaacttccac      1020
     ggtcacgtcg aaaacctcaa attcctgggc caggagttta ccggagtgtc ggaacagatc      1080
     gccgtctaca tcctggcaca cgcgctggac gaagatacat ataaactctg ggaggcgacc      1140
     atcaagcgtg gagaactccc caaatacgac gaggccatca agttcctgaa aagccgcgtc      1200
     tccgtgcttg agcgatggga aactaccaag ctggcagaac caaaacaacg agaacgatca      1260
     agtcatctga cttccgtatc cgagcagcct taccatatcg ccaacacagc cgtcatgtcg      1320
     catccgaaat tccggtgcga tttctgtaac gaacatcacc tcaccttcaa gtgcactgcc      1380
     ttcaatggcc ttccggtgta ccagcgcatg gcagcggtca gagagaggaa cctgtgccaa      1440
     aattgcctga ggagtggaca tcactggaag gaatgtggat cccaacactc gtgccgcaaa      1500
     tgtcaacgga ggcataacac attgctacac cggcaaccac gagtctctcg aattaccggc      1560
     caaaagcaac ctcagtcctc accagcatcc tgtgaaaacc cacgggcgtt caacgctata      1620
     ctgcccacag cgttggtcaa cctgagcgac aacgagaacc aacctgtgcc gtgtcgcata      1680
     ctcatggaca gcggatcaca ggtaaatttt atttctgaag ccatggcaga tcgtctcaaa      1740
     ctgcaaacta aggccgcaag cgttcccatt tgcggcatcg gagcatcgaa aactgtttcg      1800
     aagcagttgg tctctgtgaa actccattcc cgaatcagca gcttcaatgc aaacgtggag      1860
     tgcttgattg ttccgaaggt gaccggaacg gtgccaccct cgccggtcga catcacagag      1920
     tggccaatcc ccgttggcac ccagcttgct gatccaacgt tccacaagcc agactctatc      1980
     gacatgatcc tgggagtaac catgttcttt cggttgctga aaaacggaca gattgaatta      2040
     gatggcaatc aaccggatct tcgagaaact caccttggtt gggtcgttgc tggacatggt      2100
     ggcgtcgacg ataatctaca aacgcgattt ccggtcaacg ttggggtggc aatttctgcg      2160
     taatccagca aggcaggtat ggctggaact tcttcccagc ccggggggag ta              2212
//
ID   BEL-40_CQ-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   AAWU01013031;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_CQ_;
KW   BEL-40_CQ-I; BEL-40_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-424
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 234-234 (2011).
XX
DR   GenBank; AAWU01013031; Positions   10298   10721.
XX
SQ   Sequence 424 BP; 118 A; 122 C; 95 G; 89 T; 0 other;
     tgttggatct acgaagtgtc agttggactg gcaacacttc acaaccacga ctactacgat        60
     ttttcaccac aagatagcaa ccctgatcgc ctgccgcaac agcttcctgc gatcaagcac       120
     aaccctgcgc aacgctacgg ccgcacaacg gcgcgacgaa ccacgacgac gacgaaatac       180
     gacgacgaag acgacgacga agaggacgag tgaaaaaacc gccattttgc gggtacagtc       240
     ttttttcacc ctcggacaag tgaacacgta gttattaaac ttagtcttaa taaagctagt       300
     ttgtagtgct aatccgagtg cgtttgcttt tttaccacac ccacggccag ttcgaacaat       360
     caaagtacag tccacccgtg agtattccgc cgttttccgt ggggccaacg tgccggcccg       420
     aaca                                                                    424
//
ID   BEL-40_DTa-I repbase;    DNA;    INV; 5623 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5623
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5702-5702 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2266..5589
FT                 /product="BEL-40_DTa-I_2p"
FT                 /translation="LYLTTLQEQSLDVSVQKFWELEEIPNVASTKRYTPEQ
FT                 QLCEKLFNQTVTRLPSGRLRVSLPFKSSPASLGNSFETAKRRFLSLERRIQ
FT                 KQPEVQALYVAFMREYLALGHMSLADSGIPSEPHYFIPHQCVLRPQSSTTK
FT                 LRVVFDASCKSSTQLSLNDLLMVGPTIQSSLFSLAYAISADITKMYRQFEI
FT                 DESQRQYQMIVWRESPTEPVQAYRLNTITYGTASAPYLAVRCLQYLSNLYA
FT                 SSHPRGAEALSKNFYVDDLLAGAETVEELQVMRQELEHILSSAGLSLAKWS
FT                 YNVASENINSSTTIILGDQDDTKTLGLIWSPNTDIFKYSFSAVSPTEVLTK
FT                 RSILSFSARLYDPLGLLSPITTKAKILIQQLWLCKLGWDDPLPEDFRRSWE
FT                 SMASCFLELDKVSIPRHIGVTNKGSTQIHGFADASARAFGCCLYARVVTPN
FT                 GISVRLVTAKSRVAPLKTKTIPRLELCAAHLLAKLWQTVREDLDFAVERIF
FT                 FWSDSEVVLHWLEQHSSTLNVFVANRVADIQEMAAEVQWRHVPTKENPADL
FT                 VSRGCAITELNDSLWFSGPSFLSEKIELWPQNPHFTLSEVEKRLEKRSSAA
FT                 VLVAINHQPDEILALLETQSSYXKILRIVAYILRFVRGRRAEQYTSVVITA
FT                 QELRHAFLTIIHSTQQFEFAEEFRKIEKSEILKPSLQKLTPFIWKHQDAQR
FT                 NLPLLRVGGRLLNAPLPYDAKHPLLLPKSCKFAKLFVEHLHRSNHHAGPRI
FT                 LVGLLQQQIWLVNARQLCNTIVRHCTHCFRYKPRLLSQVMGNLPADRLNGQ
FT                 FPFEVSGVDFCGPVKVSLKLRGKPPVKMYIAVFVCFITKAVHLDVVTDLTS
FT                 NSFIMCLSRFIGRRGPVARLYSDNATNFVGAARELQDLVKAFTAHSCAMVE
FT                 HAATHGTEFVFIPPRAPHFGGLWEAAVKVAKHLLIRAIGSALLSKDELDTI
FT                 VVEVEAILNTRPIVAVTTNPNDIQAITPAHLLAGRTLGALPPVSVQRVNDD
FT                 KLSYLSRWRLVSAIKERFWTSWLREYLLSLQQKQKWTKDQHNLVEGTIVLI
FT                 QEDNIPSQAWLLGVVTKVFPGSDGKVRVAEVKTKNNHVKRAIHRLAPLPIN
FT                 "
FT   CDS           join(466..987,944..2272)
FT                 /product="BEL-40_DTa-I_1p"
FT                 /translation="MPPKKRSGNNSSFVQDDDELELLQQRDILVTKITRIK
FT                 VSITQGTLVKDPLQIECRLDVLNAYVEKAFNIQWSLDKINPELASSEELED
FT                 LCVTTRALLQSLRSSHQPQDFKDNTLNTTGGHHRQLPQMKLPKFSGVYSEY
FT                 KNFIGLFETLVHDDDQLSNVEKFNHLLGKGIPGNGRNSIICLVKAFQVTDS
FT                 NYTKALAALKRVYDNECLIFFEGVSRLFDLSCIPSPSASSLRTLIDNARAI
FT                 YESLLSVGDDSKIVNVMLIHIVMSKVDAGTRARWEEGLDYSKIPTWKDCED
FT                 EMNKRYQHLSVEESSSNKGKTNKAYRDNRPKKSGTTLLAVNQMEQCVFCKS
FT                 QEHVITACSSFTALSVANRFRFAKGSRLCINCLKRGHNVSSCNLSHCRVCN
FT                 KPHNSLLHRYISTSTQSIAPQPTLGTATSSNHVPDVAVNHARSVNAGQVVL
FT                 ATALVKIKGRLGEYQVARVLLDSGSQVNFITESLANTLKLHRIRKPIRLFG
FT                 IGKSNSLTETCVQTLICSRTSNFQMSAELCVLPSISSYQPEKAIRNSELGI
FT                 PQHLSLADPLFYKPQKVDLLLGADAFFDLLAEGHIKGASDKLSLQNTVFGW
FT                 VVSGRYKSLTSQPKDSSCI"
XX
SQ   Sequence 5623 BP; 1638 A; 1249 C; 1210 G; 1525 T; 1 other;
     ttttggcgcc cccgggtgga cacacggatt ccttggattt tggattagag ttgttaattg        60
     gaattaacat aatacatagt ttcaaacaag tgaaacacat gggtttctgt aactgcacac       120
     ggcagctcgc cagtactcaa taccaggtaa catattgcag tgttatttga gcaaataatc       180
     aattgaaatt ctgttgctta ttataataaa cattaaactt gttcatttaa attttggcat       240
     ataagtgaaa ttttggtgga aaaatacccg tacacagttg catagctgta tataattggc       300
     ggagcacatg tctacacaca catgtaccag tccgaaacgg ttatcttcaa ttcctcttta       360
     agagcggtaa actcgttagt tagaagtagt acagttctgt ggccggctca tatgtattga       420
     gcattacgag agtagttcaa taagtttgtc gttttcacat ttaccatgcc tcctaaaaaa       480
     cgaagtggta ataactcttc ctttgtacaa gatgacgatg aattggaact tcttcaacag       540
     cgagacattc ttgtcaccaa gataacgcga attaaagtat caatcactca aggaactcta       600
     gtaaaagacc cactacagat agagtgtcga ctagatgtac taaacgctta cgtggaaaag       660
     gcatttaata tacagtggtc attagacaaa attaatccgg agttggcatc cagtgaagag       720
     ctggaagatt tatgtgttac tactcgggct cttcttcaat ctcttagaag ctcacatcaa       780
     ccacaagatt ttaaagacaa cacactaaat acaactggtg gacatcatag acagctaccg       840
     caaatgaagc tgccaaaatt tagtggagtc tattcagagt acaaaaactt tattgggttg       900
     ttcgaaactc ttgtgcatga tgatgatcaa ctatcaaacg tagagaaatt caatcatttg       960
     cttggtaaag gcattccagg taacggatag taattataca aaggctctcg ctgcgttaaa      1020
     acgtgtatat gataatgagt gcttaatatt ttttgaaggt gtttcaaggc tatttgattt      1080
     atcttgcata cccagtccgt ctgcttcatc gttgagaact ttgattgaca atgctagggc      1140
     aatttatgaa tcattgttgt ctgttggtga cgacagtaaa attgttaacg tcatgttgat      1200
     ccatatagtc atgtcaaagg tagacgcagg aacgcgagct agatgggaag aggggcttga      1260
     ttactctaaa attcccacat ggaaagattg tgaagatgag atgaataagc ggtatcaaca      1320
     tttgtcagtt gaagaatctt catcgaataa agggaaaacc aataaggctt atcgagataa      1380
     ccgaccaaag aagagtggta ctacattatt agcagtcaat caaatggagc agtgtgtgtt      1440
     ttgcaagtcg caggagcacg tgataactgc ctgttcctca tttactgcgc tttcggttgc      1500
     caaccgcttt agattcgcca agggctcgcg actttgtatt aactgcctta aacgagggca      1560
     taacgtttca tcttgcaatt tatcacattg ccgagtctgt aataagccgc acaatagttt      1620
     gctgcatcgt tatatttcca cttcgactca gtctatcgca ccacaaccga ctttaggtac      1680
     cgcaacgagt tcgaaccatg ttcctgatgt ggctgtgaat catgcccggt cagtaaacgc      1740
     aggacaggta gtgttagcca cagccttagt taaaataaaa ggacgccttg gggagtatca      1800
     agttgctcga gttttattgg actcaggatc ccaggtcaat ttcataactg aaagtttagc      1860
     caacactctg aaactgcacc gcattagaaa gccgatccga ttgtttggaa tagggaagtc      1920
     aaactcctta actgagacct gtgtacaaac cttaatatgc tctcgcacca gcaatttcca      1980
     gatgtcagca gaattatgcg ttttgccatc catttcgtca tatcaaccag aaaaggcaat      2040
     tcggaactcg gagttaggca ttccacagca cctttcgcta gctgatccat tattttacaa      2100
     accccaaaag gtagatttac tattgggtgc agatgcattc tttgacttgc tagctgaagg      2160
     ccacataaag ggagccagtg ataaactgtc attgcaaaac actgtgtttg ggtgggttgt      2220
     atcaggtcga tataaatccc tgactagtca gccaaaagac tctagctgta tttaaccacg      2280
     ctccaagagc aatccctcga tgtcagtgtg cagaagttct gggagcttga ggaaattcct      2340
     aacgtcgcat caacaaaacg atatacccca gaacaacagc tttgcgagaa attattcaat      2400
     caaaccgtta caagattacc ctcgggtcgg ctaagagttt ctttaccctt caaatcgagc      2460
     cctgcgagct tgggcaattc cttcgaaact gccaaacgaa gattcttgtc tttagagcga      2520
     aggattcaaa aacaacctga ggtccaagct ttgtacgttg cattcatgag ggagtattta      2580
     gccttagggc acatgtcact agccgacagt ggtattccca gtgaaccaca ctattttata      2640
     ccgcaccagt gtgtactgag accgcaaagt tcgacaacaa aattacgcgt tgtttttgac      2700
     gcatcgtgta agtcgtcaac ccagctatct ttaaatgatt tgcttatggt tgggccaaca      2760
     attcaatcat ctctcttctc tcttgcatat gcaatatctg cagacataac aaaaatgtac      2820
     cggcaattcg agattgatga gagtcagcgt caataccaga tgatcgtatg gagagaaagt      2880
     ccaacagaac ctgtgcaagc atatagacta aatacgatta catatgggac ggcatcagcg      2940
     ccctacctag ccgtcagatg tcttcaatac cttagtaatt tgtacgctag ctctcaccct      3000
     cgcggtgccg aagctctgtc taaaaacttt tatgtagacg acttactagc tggagctgag      3060
     acggtagaag agcttcaggt tatgcgccaa gaactggaac acattttaag ttcagcaggt      3120
     ctgtctttgg cgaaatggtc gtacaatgtt gcctcggaaa atattaactc gtcaacaact      3180
     attattcttg gcgaccaaga tgacactaaa acattaggtc taatatggag ccccaataca      3240
     gatattttta aatattcttt ctcagctgta agtccaaccg aagttctcac aaagcgatct      3300
     attttatctt tctcagcacg cctgtatgac cctcttggtt tactaagccc aataacaacg      3360
     aaagctaaaa tccttataca acaactttgg ttgtgtaaac tcgggtggga cgatccactt      3420
     ccggaagact tccgtcgaag ttgggaatca atggcctcct gttttcttga attggataaa      3480
     gtgtctatac cccgacatat tggagttact aacaaagggt cgacccagat ccatggattc      3540
     gcagacgctt cggcacgggc atttggctgc tgtttgtatg cgcgtgttgt tacgcccaat      3600
     ggaatctcag tccggcttgt cactgcgaag tcaagggttg cgccattaaa aacaaaaaca      3660
     atcccaaggc tggagttatg cgccgcacat ttgttggcaa aactatggca aaccgtaaga      3720
     gaagatttgg atttcgctgt agagcgtatt ttcttttggt ctgactccga agtagtttta      3780
     cactggttag aacagcattc gtccacctta aatgtatttg ttgcaaacag agttgctgat      3840
     atacaagaaa tggcggcgga agtgcaatgg cgccacgtgc caactaaaga aaatccagca      3900
     gatcttgtgt ctcgcggatg cgcaattaca gagctgaatg attccttgtg gttcagtggc      3960
     ccatcattcc taagtgaaaa aattgaactt tggcctcaaa atccacattt tacgctttca      4020
     gaggttgaaa aacgactaga aaaacgttcc tcggcagcgg tcttagtagc aatcaatcat      4080
     caacctgacg agattcttgc cttacttgaa actcagtcaa gctatmtgaa aatcttgaga      4140
     attgtcgcgt acatactaag attcgttcga gggcgcagag ctgagcagta tacatcagtt      4200
     gttatcacgg cccaagaatt aagacatgcc tttctcacaa taatacacag cacacagcaa      4260
     ttcgaatttg ctgaggagtt tcgcaagata gaaaaatcgg aaatacttaa accatccttg      4320
     caaaagctaa ctccatttat ttggaagcat caagatgcac aacgaaacct tcctcttcta      4380
     cgggtcggtg gtcgtttgtt aaacgcgcca ctgccatacg atgcaaagca ccccctttta      4440
     ttaccaaaat cgtgtaaatt tgctaaacta ttcgtagaac atcttcacag gtccaaccat      4500
     cacgcaggcc cacgcatact tgtcggttta cttcagcaac aaatctggct cgtcaatgca      4560
     cgtcagttat gcaacacgat cgtcaggcac tgtacgcatt gcttcagata taaacctcga      4620
     ttactgtcac aagtcatggg aaatctacca gctgatagat taaacggaca atttccgttt      4680
     gaagtcagtg gtgtggactt ctgtggtcca gttaaggttt cgctaaagtt gcgcggcaag      4740
     ccacctgtga aaatgtatat tgcagtcttt gtgtgtttta tcaccaaggc tgtgcacttg      4800
     gacgttgtca cagatttgac ttctaactct ttcattatgt gtctctccag attcatagga      4860
     cgacgagggc ctgttgctcg gctatacagc gacaatgcaa cgaattttgt cggagcagct      4920
     cgcgaacttc aagatcttgt caaggctttc actgctcaca gctgcgcaat ggtagaacat      4980
     gctgcaacgc acgggacaga gttcgtcttc attccccctc gagcccccca cttcggtggc      5040
     ttgtgggaag cagcagtgaa ggtcgccaag catcttctca ttcgggccat cggcagcgct      5100
     ttgttgagca aggacgagct cgacacaatc gtcgtggaag tggaagctat actgaacacc      5160
     aggccaatag tagccgtcac caccaatccg aacgacattc aagccataac cccagcacat      5220
     ctactagctg gtcgaacgct aggtgcgctg ccacccgtgt ccgtgcaacg cgtcaacgac      5280
     gacaagctct cttacttgag cagatggcgg ctcgtgtccg ccatcaagga gcgcttttgg      5340
     accagctggt tgagagagta ccttctcagc cttcaacaga agcagaagtg gaccaaagat      5400
     cagcacaacc tcgtggaagg caccatcgta ttaattcaag aggacaacat tccgtcgcaa      5460
     gcgtggctgc taggcgtcgt cactaaagta tttccaggat cggatggaaa ggttcgagtg      5520
     gcagaggtca aaacgaaaaa caatcatgtc aaacgagcca ttcatcgact agctccgctc      5580
     cctattaact gatttgaagt ctggagactt tcaatgtggg cgg                        5623
//
ID   BEL-40_DTa-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-40_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-307
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5627-5627 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 307 BP; 102 A; 54 C; 56 G; 95 T; 0 other;
     tgttaagtca tttcgcggta ttagataaac attagattaa atcatgaaat gaataaaatt        60
     gtaagcaatg aagtaaaaga atgtaaacac ataatgttaa gatcagaact tatgttaagc       120
     tttcctctct tgtatttgca cacgcagccg ctgagctcgg caaagctcca tgcagatgag       180
     aagttcatta aagccagtga aggcagttga aattttacac tctatacatc cacaccgtgt       240
     ccctcatttt cgtggctgtt tcctgacgga gacagattaa taatagttgt taatttatga       300
     ctattca                                                                 307
//
ID   BEL-41B_DTa-I repbase;    DNA;    INV; 2860 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   08-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41B_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2860
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 96% identity to
CC   each other.
XX
SQ   Sequence 2860 BP; 864 A; 677 C; 477 G; 842 T; 0 other;
     tttgatccat cgaccggata tttccagaag ttccactagt accagcgttc accagcagct        60
     acggtggctt gaaccgctcc atataagtgc tacttattaa tattatttgc cggtcataca       120
     gccagttgct tgaaccccat tttgttcaac ttgttgtatg atttcttgtc taaatccaaa       180
     tgagatttaa tgcgacgcaa cggcatttaa tatatatatt ccaatatatc gcaattcctt       240
     tgtgaacaaa ttccgtgcac tccaaaaaat tccgtggcta tccacaagtt tgcaaatccg       300
     cagtgacaat ttatttaaat tacaataaat atatattaaa aaaaactcga agtgtatgta       360
     aaaatataac ccagccacgg taaaagttta cgatttttaa aattgttccg caaaatagca       420
     ctctgcgttt ttactgtgtt ccagctgcgt gtatatattt atagataaat attctaatac       480
     agtccacttc tacgactctg cgtgtctaaa tcaattccaa gaccctaata tatatggtct       540
     ataaactaca ttttccgatt atctgttaaa aatatataat ccagacgcag taaatatttc       600
     aaattcaaag tgatccgccg aaattggcag ctttgtgttt ttactgtgtt tctgctgcgt       660
     gcatatattt tttacataaa tatcaaaata cagtccactc tatccacata cattttagag       720
     ctaattgttt caataaattc ccgaaaacat attttgcatt tcgaagctat tccgctattc       780
     gtaatcgaag tctccacaat taccgcaatc ggtgctcatc cgctatccag ctgatataca       840
     catacataca tacatacata cagctacgta ctctccacgc attctgcagc gcacagtggg       900
     tcaagtgcaa acaataatta aatccataaa aatataatac aatccgaatt ttaatattat       960
     taagcaagta atatttttcc ctatccgtgc gccagcgtga ccttattttc tttacataat      1020
     ttaattattg tttattttgg gctcacacac gttattattt attttcggaa tcattccgaa      1080
     ttataaaatc catttccgta aaccttcctc agagtgaccg taatccttac gcactttcga      1140
     ttggttcata aaattccaat tcgcttccga aaaattagta attttttaat taattttttg      1200
     agtgatcaat ttcaatttaa attatatccg taatggcaac cgcagcttta aacctattta      1260
     gtgccagagc tgaccatttg agccatttcc aagtccaagc tttatggcgt aaggtggagg      1320
     acgcatacga cgtatgttta aagtgcattg tgggggtagg cgaaagtgcc gcagactcca      1380
     aatcggacct caaaattaaa tactttcaaa cgtacgatat atacgaaaag ttggccgttc      1440
     agatcctcga acaaatcgaa cagggctcct cccaatcatc tcaacctcca gcatcttctt      1500
     tctaaaatca aatttcgttt ggttgtcagc ttcctccgat cgatacggag attttctcag      1560
     gcgattatct tcgctggtcg actttccggg accttttctc ggcgatctac atagacaatc      1620
     ccagtcttac gcctgttgaa aagctgtacc atttaaatgc caaaaccagt ggcgaagctc      1680
     atgatatagt gtccaagtcc ccactaacca ataatggctt ccgctcagct tggacaaaaa      1740
     ttactgagcg tttcgaaaac aagtgatttc aggtgaacag tcacctaaaa acattgttca      1800
     atgtgcaatc catcgcacaa gagtctggag atgccttgaa gaactacaaa acaccattct      1860
     gggttgttta actgccttac aactctccgg aattaaaatt gagaattggg accctatatt      1920
     agtctacgtt tgctctacaa agcttccgaa gcttacgctc tcctaataga agcaatcttt      1980
     acgtaataag gttgaaattc ctacttggct agagcaaaat tcctttttaa ctgagcgcca      2040
     tcgaacacta gaggccgtcg atagtatccg ggctgataat tcaatcaacg tccagcccaa      2100
     aaaggcacat cgaatggcag aattgccaag aataaattca ttcactacga tacccaaagt      2160
     ttgcgatctg tgttcaacga agaaccatcc cgtgcgtata tgtccacgct tcctaaaagt      2220
     gacggtgaat gatcgttcag cctacatccg cgataaacag ttatgctcaa attgctttgc      2280
     aactagccat cctccaggtg attgcacaac cgcccaaatg tgcttcactt gccaaagtcg      2340
     gcatcatacg ctgttgcatc caagcaacaa ttctacaatt ccttccaggc cagtgtccgc      2400
     ctcaatccca caccaaattt cgtcctactc agcgcaaatt ttcaacactc gtgaaactcg      2460
     gaaattgtcc acactaaacc atatacaaga agtacctcct accaatatta catccgacta      2520
     ttgggttcca tataccgcct tggatggcag gcgttcccga ggtattaaat cctaccaatg      2580
     ccgagtctgc caaaaaatcc atcctctacg gaagtgccac cgctttctga cgctaactgc      2640
     cgaacaacgg atccaggcag tacaactgca tcaatattgc aaaaattgtt tggcccacca      2700
     tcattcagaa ggatcttgcc gtagcgacca tagatgccac aagtgtggga aggaccacca      2760
     cactttacta cataaggacg accgatctta tctttcgacg ttttcctgag tctacaatcc      2820
     tgaagttctt gctacggatg tcctcgcaag ggggggagaa                            2860
//
ID   BEL-41C_DTa-I repbase;    DNA;    INV; 2967 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   13-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41C_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2967
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5641-5641 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 2967 BP; 848 A; 741 C; 499 G; 866 T; 13 other;
     tttgatcctt ctaccggact tccactcctg gattcttccg aagattatct ccagcgccta        60
     cggtggcttg aaccgctkca gctaagttcc atttccaatt gttattattt gccggtcata       120
     cagccagttg ttcgaacccc atttcgttca atttgttgta tgatttcttg tctaaatcga       180
     aaagcgattt waatccgacg caacggcatt taatatatta ttccattcct tttgtttgtg       240
     cggcattttt tccattccct tatgccgtac acttcaaaaa attccgtgca aagttgcaag       300
     tccatagtgc caaattattt caattataaa taaaaatatt cctaaaaact ccaagtktgt       360
     gtaaaaatat aacccagccg cagtaaaagt ttcctatttt ttaaattgtt ccgcaaaaat       420
     tgcactctgc attttttact gtgttcctgc tgcgcgtaca tattcacata aatattctaa       480
     tacagtttac ttatastact ctgcatttat aaatcaaatc caagacccta atgacacaaa       540
     catatttttc taaacatatt ttcgtggtca ataaactaca tttttccgtg tgtaaaaaat       600
     atatagtcca gccacagtga atatttcaaa atcaaagtga tccgccgaaa ttggcagctt       660
     ttgtgatttt actgtgtttc ctgctgcgtg catatatttt tacattaata ttccaaaata       720
     cagtccactt catctacata catttttgag ctaattgttt caataaaatc cmgcaaacat       780
     attttgcatt tcaaagctgt tccgctattc gcaawaagtc tccagaactc ccgcaatcgg       840
     cgacktacaa tatccagctg ttagctagcc acatacatat gtacatacac acagctacgt       900
     actctccaag tattcggcag cgcacagtgg gtcaagtgct tacaataatt ataaaaaaaa       960
     gaccataaat ccgaatttta atattgttaa acaattaata ttttttttcc tatccgtgca      1020
     ccagtgtgac catattttcc ctttgcataa tttaataatt atttattttg tgcatacact      1080
     taaatactta ttttcgaaat tatttcaaat cgccatacag tttcctccac acaatacagt      1140
     gtgaccgtat atccckacgg actttcaatt ggttcctaaa ttccaattca caataatttc      1200
     cgtgtaaacg atttcgcaat aaattttaaa ctcctgtccg taatggcttc tcaagcaaaa      1260
     tccgcsctaa ataaatttat tgtcacagct gacactctga gccattttga agccacttta      1320
     aactttccgg gtgcacccac accaacgtta tccgcatcta aaatccgtcg cgagcatgtc      1380
     agttccttat ggcaaaaggt gaatgatgca tatgacacat gctccgagtg cattgtggct      1440
     gcgggtgaca gcgccgcaga caccaaatcc atcctgaagg cgaaatataa cgaaacgtat      1500
     tccatatacg aaagatttgc tgctcagatc ctcgagcaaa tacaacaggg ctcccccaaa      1560
     tcatctcaac ctccagcatc gtctccccaa gactacattt cgtttggctg tcagcttcct      1620
     ccgatcgata cggagatttt ctcaggcgat tatcttcgct ggccgacttt ccgggacctt      1680
     ttcacggcga tctatataga caatccgagt ctgacgcctg ttgaaaagct gtaccattta      1740
     aatgccaaaa ctagtggcga agctcattct atagtttcca agtccccact caccaatgat      1800
     ggcttccgtt cagcttggac aagtctaact gagcgtttcg aaaacaagcg atttcaggtg      1860
     aacagccacc taaaaacatt gttcaatgtg caatccatgg cacaagagtc tggggcagcc      1920
     ttaaaggaac ttcaacacac gattcaagga tgtttaactg ccttagaact atccggcatt      1980
     caaattgaga attgggaccc tattctagtc tacatttgct ccacaaagct accaaagctc      2040
     acgctctcat tatgggagca atccattcaa aataaagccg aaattcccac ttggctagag      2100
     ctagattctt ttttgactga gcgccaccga acactagagg ccgtcgatag catccagtct      2160
     gctagttcac tccaagtccc gtccaaagtc ccagctcgat tggcagaact tccaaatata      2220
     aaktccttca ccacgagagt acttccaata cccaaaggct gcgatctgtg tttaaaagaa      2280
     aaacaccccg tgcgtatatg tccacgcttt ctccaaatgc gggtaaatga tcgttcagcc      2340
     tacatccaag ataagcagtt atgttccaat tgttttgcaa gcagccataa attgcaggat      2400
     tgcattagcg ctcacagttg ttttacttgc caaagtcggc atcatacgct gttgcatcca      2460
     agcaacaatt ctacaattac ttcgattcca tccaaacctc cagggccagt gtcagcctca      2520
     atcccacaca gaatttcgtc tttctcagcg cgtgtttcca acgttcatgg gattaaccga      2580
     atttccgatc ccgacccgat tacaagggtc tatcctacag ataattcttc cgattattgg      2640
     gttccatatc ccgccttgga tgacagacgt tcccgaggta ttaaatccta ccaatgccga      2700
     gtctgccaaa agatccatcc gctacggaaa tgccaccgtt ttctacggct tggcgcccag      2760
     aaaaggatcc akgaagtaca tawgcataag tactgctcka attgcttggc ccacgatcat      2820
     tcccaggact cgtgccgcag tggaaattgc tgccagaagt gtggaaagaa ccaccacact      2880
     cttctacact tggacgatcg ctcccgctat cctgcagata cttctcctga tgttttgcta      2940
     cggtggtcct cgcaaggggg gggagaa                                          2967
//
ID   BEL-41C_DTa-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   13-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41C_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-316
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5631-5631 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 316 BP; 66 A; 102 C; 61 G; 87 T; 0 other;
     tgttcacgcc aaaagggcgt ctaatttcga gaggcagtgt cgagcggcag ttttctccag        60
     atgtccacat ctcgctcgct cgcactgccc ttcgctctcc ctctccaact ctcccgcaac       120
     tctacgctcc gctctggagc cgctaagtta agcttcatgt aattagttct attttcaagt       180
     gtcaaataaa cagccgcacg tcgcgcaaaa ccccgaagtt tttccatcgt gtttttcgtt       240
     acaatttctg cgcggaaatt catccgcttt tcctgggact catcagcgct tctacgatca       300
     agccgccgcc ccaaca                                                       316
//
ID   BEL-41_AA-I repbase;    DNA;    INV; 6224 BP.
XX
AC   supercont1.245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_AA_;
KW   BEL-41_AA-LTR; BEL-41_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6224
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.245; Positions  455219  461442.
XX
CC   Positions [5275-5835] - Integrase core
CC   'CAGAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(22..3000,3004..6222)
FT                 /product="BEL-41_AA-I_1p"
FT                 /translation="MSNPDKTTSTSKAATPEKSPTGCMCCDRAEDADDCVQ
FT                 CDQCNGWWHMSCADVTASVADRSFTCAHCLPLSVSSRTTTSSARAARLALK
FT                 KKMLEEQQAMEQRHLAEKYKLLEEELQEVEETASNRSRISKRTSQERVKEW
FT                 QQKCAEQSKGAPGVSLTNQSKDSAAVSLAPQDAPHDQKDPEETNPVQVDGP
FT                 SASNAPLPSLGNLRMLSETATKRDEPVSGKFTSTMQQLQQNSIIAEGCPAT
FT                 GFGKPQWNSTAKPFGLRNPNIIGQVQQPYTGAIPKTVPYQQQVVHRSGNVA
FT                 SKMPPVAHQGKPLRDPSHDFSIPHENENSLQQIINQFGTMAPSATDSSFCA
FT                 NMRPFGVSALPQSGTRVYQPSTANPISSTGLVSPPLGLPNNTFMPANPTSS
FT                 FGFVPPSVGLPNVGPSPQPNPAFSIGTVPPPPGQPIANQFTPSPSQLAARQ
FT                 VMSRDLPTFSGDPADWPIFISSFMNSSLACGYNSAENLARLQRCLKGPAYE
FT                 SVKSRLLLPESVPQVIDTLRLLYGRPELLIGALLQKVRSVPAPRAEKLETI
FT                 IDFGIAVRSLCDHLEAAGQQEHLSNPTLLMELVEKLPTHTKMQWADYMQQH
FT                 AVVNLKAFGDFMLGVVTAVSRVTTYAGGNSGGLQRSKHKGNVNAHNSEAEP
FT                 VRQSVQEKERFCVCCKKTGHRVSECAVFKAYTVDNRWKFAQTNGLCRSCLN
FT                 GHGRRSCRNATQCVIDGCQYRHHPLLHSDRSSSQGQRTQVSTMQNHMHRRT
FT                 KHSLLFRIIPIIISGPLATIETFAFLDDGSDLSLIESSLVQQLGIDGWEKP
FT                 LCLKWTGNVTRVEPESKQVQVTVRGVSNKQLFQLNDIHTVKELTLPEQSLD
FT                 YEELSQRYRYLQGLPIVSYEKAVPRLLIGVNNARLTVPQQVREGKKSEPIA
FT                 VKTRLGWCIFGGRGNQASHSLNYHTCECSSDQELHNVVKDYFAMEDAGVTP
FT                 PVMLESEEDKRARAIMEETTIRIGERFETGLLWRYDNIFPDSYNMAVRRFE
FT                 CLERKMLRDPELAANLNKQIAEYQQKGYAHRATEEELVRADPKRVWYLPLG
FT                 VVTNPRKPGKVRLIWDAAAKVDGISLNSMLLKGPDQLTSLPAVLTRFRQYK
FT                 VGVSADIQEMFHQLLIREADRHSQRFLFRSDPLKPLEIYLMDVATFGSTCS
FT                 PASAQYVKNKNAEEFAVLYPRAAEEILENHYVDDYLSSYESAEEAERVSRE
FT                 VRSIHQEGGFKLRNWLSNSSAVLHGLSEEEPKATKNLCLSATESSDRVLGM
FT                 LWQTADDELWFPMKMKEEVQRVIDSRERPTKRQMLKCLMGIFDPLGLLCAF
FT                 LVHGKILLQDVWRANVQWDETVTGKIFDRWVKWTGLFSRVGDLRIPRCYFR
FT                 GATAQMYEHLQLHVFVDASEAAFAAVAYFRVVNAEGEAECSIVAAKSKVAP
FT                 LKPLSIPRLELQAAVLGSRLMSFVQENHSVKVKQRFIWSDSALVVGWLRAD
FT                 HRRYKQYVACRIGEILTTTDVSEWRWVPGKLNPADAATKWGNDPCPAVTDV
FT                 WFKGPEFLRFPEVNWPKQVEASDDPEEELRSCFMIRGTLIPESIVDFARFS
FT                 KWRRLLRAVAYVHRFIGNCRRKRQGEKLELLHLSQEELKKAKNTLMWTAQW
FT                 QEFPDEMALFSSGKTELPKTSSLYRLTPILDEYGVLRVDGRIGAAPNAQFD
FT                 ARFPVILSKTHRVTKLIVDDFHQMFHHGNSETVVNEVRQFYHISRLRVVVK
FT                 QVAAACQWCRVTRAVPKVPRMAPLPVSRLSSFSRPFTYTGVDFFGPFLVKV
FT                 GRSAAKRWICLFTCLTIRAVHVEVAHSLSTPSCIKAIRRFVDRRGAPAEIY
FT                 SDNGTNFQGAEHLLREQLKEIHGNLAATFTNTDTKWIFNPPAAPHMGGAWE
FT                 KMVRSVKSAMQASYNSDRKLDDEGLETLAVEAEGIVNSRPLTYLPLDAAEG
FT                 EALTPNHFLLGSSNGVRQPAVPFSDPASAVKNTWCLIQQQLDVFWKRWIRE
FT                 YLPMLTRRMKWFGEVKPVAVGDLVLIVDETRRNGWIRGKVMGVMTAKDGRV
FT                 RQATVQTARGMLRRPVSKLAVLEVELCGKTGTGGQCYGGE"
XX
SQ   Sequence 6224 BP; 1671 A; 1471 C; 1674 G; 1408 T; 0 other;
     aaatctttaa gaaatttcgt catgtcgaat ccggataaga cgaccagcac ttccaaggca        60
     gccacaccgg agaagagccc caccggctgt atgtgctgcg atcgtgctga agatgcggat       120
     gattgtgtcc aatgtgacca gtgcaatggg tggtggcaca tgtcgtgcgc ggatgtaaca       180
     gcctccgtgg cggataggtc gtttacgtgc gcccactgct taccgctaag tgtctcctcc       240
     cggacaacaa cgtccagcgc tagggcagca aggttggccc tgaagaagaa gatgctggaa       300
     gagcagcagg cgatggagca acgccacctc gctgaaaagt acaagcttct ggaagaggag       360
     ttgcaagagg tggaggaaac ggctagcaac aggagccgga tcagcaaaag gacgagtcaa       420
     gaaagggtga aggagtggca gcagaaatgc gcagagcagt ctaagggcgc gccgggtgtt       480
     tcgttgacta atcaatcgaa agactctgca gcagtttctc tggccccgca ggatgcaccg       540
     cacgatcaga aagacccgga ggaaaccaat ccggttcagg tagatggccc atcggcatcc       600
     aacgcgccgc ttccatctct agggaatctg cgtatgctgt cggagacagc aaccaaacgt       660
     gacgagccag tttcggggaa gtttacctcg acgatgcagc aactacaaca aaacagcata       720
     atcgcagaag gatgtccagc gactggtttc ggcaagccac aatggaattc gacggcaaaa       780
     ccgttcggtc ttcggaaccc gaacatcatt ggacaggttc agcagccgta caccggcgcg       840
     atccctaaaa cggttccgta tcagcaacag gtagtacacc gatcaggtaa cgtcgcctcc       900
     aaaatgcctc ccgtagcaca tcaaggtaag ccacttcgtg atccatccca tgatttttcc       960
     ataccacacg aaaatgaaaa ctcccttcaa caaataatta atcaatttgg aaccatggca      1020
     ccatcagcca cggactcctc attctgcgcc aatatgcgcc cgttcggtgt aagcgctctt      1080
     ccacagtctg gaacgagagt ttaccaaccg tcgacggcaa atccgatatc atccaccgga      1140
     ttagtttccc cgcctttggg actgccaaat aataccttta tgccggcaaa tccgacctca      1200
     tctttcggat tcgttccccc atccgtggga ctgccgaatg ttggcccttc gccacagcca      1260
     aatccggcct tttccatcgg aactgttccc ccaccgccgg gacagccgat agccaatcaa      1320
     tttactccct ccccctcgca actagctgcc cgacaagtaa tgtcgcgcga tttaccgacg      1380
     ttttccggcg accccgccga ttggccgata tttatcagca gcttcatgaa tagctcatta      1440
     gcttgtgggt acaatagcgc tgaaaacctc gcgcgtctcc agcgttgttt gaaggggccc      1500
     gcgtacgagt ctgtcaaaag tcgtttactt ctccctgaat ctgtgcctca agtgattgac      1560
     actcttcgct tgttgtatgg acgaccagag ttgttaattg gtgctctact ccagaaagtg      1620
     cgtagtgttc cagcgccaag agcggagaaa ttagaaacca tcatcgactt cggcatagca      1680
     gtacgcagtc tttgcgatca tctggaggct gctggacagc aggaacacct ttctaatcca      1740
     acgttactga tggagttggt ggagaaactg cctacgcaca ccaagatgca gtgggcagat      1800
     tatatgcaac aacatgcggt ggtcaacctt aaagcgttcg gcgacttcat gcttggagtc      1860
     gtcacggctg taagccgagt tacaacgtac gccggcggga acagcggcgg tctacaaaga      1920
     tcgaaacaca agggaaatgt gaatgcccac aacagtgaag cagagccagt tcgtcaatca      1980
     gtgcaagaaa aggaacgttt ttgtgtttgc tgcaagaaga ccggtcatcg tgtgtccgag      2040
     tgtgctgtgt ttaaggcgta tacagtagac aatcgatgga aattcgcgca aactaatggg      2100
     ctgtgccgga gttgtctcaa cggacacgga agaagaagtt gcaggaatgc gactcagtgc      2160
     gtgattgacg gatgtcaata tcgtcatcat ccgctgttac attccgatcg atcaagctct      2220
     caaggacaac gtacacaagt gtcgacaatg cagaatcata tgcaccgacg aactaaacac      2280
     tctcttttgt tccgcatcat tccaataatc atttccggtc cgttagccac catcgaaacc      2340
     ttcgcctttc tggatgatgg ctccgatcta tcacttatcg agagcagcct agtacagcag      2400
     ctgggcatcg atggttggga gaaacctctg tgcctgaaat ggactgggaa cgttactcga      2460
     gtcgagcctg agtcgaagca agtccaagtc acagtcagag gagtgagcaa taagcaacta      2520
     tttcaactca acgacattca caccgtgaag gagctcactt tgccagagca gagtctcgac      2580
     tatgaagaac tgtctcaacg ttaccgctat cttcaaggtt tgccgattgt cagttacgag      2640
     aaagccgttc cacgcctgct gataggtgtg aacaatgcga gattaacggt cccgcagcaa      2700
     gttcgagaag ggaaaaaaag cgaacctatt gcggtgaaga ccaggctagg atggtgcatc      2760
     ttcggcggcc gtggtaatca ggcgtcgcat tcgctaaact atcacacctg tgaatgttct      2820
     agcgatcagg agctgcataa cgtagtgaaa gattactttg cgatggaaga cgcaggggtc      2880
     acaccaccag taatgctgga atcagaagaa gacaaacgtg ccagggcaat tatggaggag      2940
     acaaccatcc gtatcgggga gcggttcgaa acggggctac tgtggaggta tgacaacatc      3000
     tagtttcctg acagttataa catggcggtg agacgatttg aatgtctgga gcgaaagatg      3060
     ttacgggatc ccgagttagc agccaacttg aacaagcaga tagcagaata ccagcagaaa      3120
     ggctacgcac atagagcgac agaagaggaa ttagttcgag cagacccaaa gcgtgtgtgg      3180
     tatttacctc tgggtgtagt gacaaaccca cgaaaacctg ggaaagttcg attaatttgg      3240
     gacgcggcgg ccaaagtaga tggaatatct ctgaactcca tgctactcaa agggccggat      3300
     caactgacgt cgcttccagc ggttctgaca cggtttcggc agtacaaggt gggagtatca      3360
     gcagatatac aagagatgtt tcaccagcta ttgatccgtg aggcagatcg tcattcccag      3420
     cgtttcttat tccgaagcga tccgttgaag ccattagaaa tctacctaat ggatgtggca      3480
     acctttggct caacgtgttc gccggcttca gcacaatacg ttaaaaacaa aaatgctgaa      3540
     gagttcgctg ttctctatcc acgagcagcc gaagaaattt tggaaaacca ctacgtggat      3600
     gactatctca gtagctacga gagtgcagaa gaagcagaac gggtgtcacg agaagttcgt      3660
     tccatacacc aagaaggagg attcaaactt agaaattggc tatcaaatag ttccgctgtt      3720
     ctacatggat tgtctgagga agaaccgaaa gcgactaaga acctatgcct aagtgcaacg      3780
     gaaagcagtg atcgggtgtt gggaatgttg tggcagactg cagacgacga gctgtggttt      3840
     ccaatgaaga tgaaggagga agttcagcga gtgatcgaca gcagagagcg accaacgaaa      3900
     cgacagatgc tgaaatgctt aatgggaatc ttcgatccgc tcggactttt atgcgcattt      3960
     ctcgtccacg gaaaaattct actgcaggat gtttggcgtg cgaatgtgca gtgggacgaa      4020
     acggttacag ggaaaatatt cgatcgttgg gtcaaatgga ccggtctttt cagtagggtc      4080
     ggagatctac gtatcccgcg ttgttatttc agaggtgcaa ccgcgcagat gtatgagcac      4140
     cttcaactac acgtcttcgt tgacgctagc gaagccgcct ttgccgctgt tgcatacttc      4200
     agggtggtga atgccgaagg agaagcagaa tgctctatag ttgccgcaaa gtcgaaggtc      4260
     gcacccctaa aaccactttc gatccctcgc ttggagctac aagcggcagt tctgggcagt      4320
     cgcttgatgt cgttcgtcca agagaatcac agcgtaaaag taaaacaacg attcatttgg      4380
     agtgattcag cattagtagt gggctggctg cgagcagatc accggcgtta taaacagtac      4440
     gtagcgtgcc gaataggaga gattctgaca acaacggacg tatcggaatg gcgttgggta      4500
     cctggcaagc tgaaccctgc agatgctgcc actaagtggg gaaatgatcc atgccctgcc      4560
     gttaccgacg tctggttcaa aggaccagag tttcttcgat ttccggaagt aaattggcca      4620
     aagcaagtag aagcgtcaga tgatcctgaa gaggaactac gatcatgctt tatgatacgt      4680
     ggtacactga ttcctgaaag tatcgtagat tttgcacggt tttcaaagtg gaggcggctt      4740
     ctgagagcag tagcctatgt gcatcgtttc attggcaact gtaggcgcaa acgtcaagga      4800
     gaaaaactgg agttactgca tctaagtcag gaagagttga agaaagcgaa gaataccttg      4860
     atgtggactg cgcagtggca ggagtttccc gatgaaatgg cgctgttttc gtcagggaaa      4920
     acagaactac ccaaaacgag cagtttgtac cggctgacac cgatattaga cgagtatgga      4980
     gtgctgcgtg ttgacggaag gattggcgcc gctccgaatg cgcagtttga tgctagattt      5040
     ccagtgatcc tctcaaaaac gcaccgtgta acgaaactaa tagttgacga ttttcatcaa      5100
     atgtttcatc acggaaattc agagacagtt gtcaacgaag ttcgacagtt ctaccacatc      5160
     tcgcggttga gagttgtggt gaagcaagtt gcggctgcat gtcagtggtg cagagtgaca      5220
     agagctgttc cgaaggttcc gcgtatggca ccattgcccg tatctcgatt gtcgtcgttc      5280
     tctcgtccat ttacctatac tggtgttgat ttcttcggac cgtttttggt gaaagtagga      5340
     agaagtgctg ctaaacgctg gatctgcctg ttcacttgtc tcactattcg cgccgtccat      5400
     gttgaggtag cacacagcct atctacgcct tcgtgcatta aagctattcg ccgattcgtc      5460
     gatcgccgag gagctccggc tgaaatctat tcagacaacg gaaccaactt ccaaggtgct      5520
     gagcacctgt tgcgcgaaca gttgaaagaa atacacggca atctggcagc gacattcacc      5580
     aacacggata ccaagtggat tttcaatcca ccagcggcac cccacatggg cggtgcatgg      5640
     gaaaagatgg tgcgttcggt taagtcagct atgcaagcat cctacaacag tgacaggaaa      5700
     ctggacgacg aaggattgga aacgttggcc gtcgaagcgg aaggcattgt caacagccgc      5760
     ccgctcactt acctgcccct agacgctgct gaaggagaag ccctcactcc caatcatttc      5820
     ctgttaggga gttctaatgg tgttcgccag ccggcagtac cattcagtga tcctgcctct      5880
     gcggtgaaga atacatggtg cctgatacaa caacaattgg acgtcttctg gaagcgttgg      5940
     attcgggagt atctaccgat gttgaccagg cggatgaagt ggtttggcga ggtgaaacct      6000
     gtagctgtgg gagatctggt tctcattgtg gatgaaaccc ggaggaatgg atggattcgt      6060
     ggaaaggtga tgggagttat gactgcgaaa gatgggagag ttcggcaagc tacagtacag      6120
     actgcgaggg ggatgttacg gagaccggtt tcgaagttgg ccgtgttgga ggttgagttg      6180
     tgtggtaaaa ctgggaccgg tggccagtgt tacggggggg agga                       6224
//
ID   BEL-41_AA-LTR repbase;    DNA;    INV; 523 BP.
XX
AC   supercont1.245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_AA_;
KW   BEL-41_AA-I; BEL-41_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-523
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.245; Positions  454696  455218.
XX
SQ   Sequence 523 BP; 181 A; 96 C; 95 G; 151 T; 0 other;
     tgttgctgcc agcactgctc cgtcgtgtaa ccacaactga atagtctctc acccgtagac        60
     aaaggccaga gacgaaagaa tgatcattat caatttgtga tgtggaacgt ggtagaagta       120
     catgcaagtg cgtgatgtga aattggttta gttaaactca tgaattaacc ttttctaaaa       180
     tctatttaca gttgaactta ttcctaaatt tgtaaagcta aatttatccc taaaaattcg       240
     aatcacagag ttattatcac agaagtaagt tccatttgta caatcagaac taaaactaac       300
     cttaaaatta atatcacaga tatacgtaga cggaatctac ggcaggaaga aaagtagagt       360
     ttcctgagaa aaggctcacc gaaatttgta agttaggttt acatcttaaa aaaccctatc       420
     taatttggaa taaaacttct agcttaaagc tttacacgca gcacaaactc gagtttgcgt       480
     tctgctgaag acgtcggaaa gagcctcttt tgttctagga aca                         523
//
ID   BEL-41_AnFu-I repbase;    DNA;    INV; 5559 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5559
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 688-688 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           268..5556
FT                 /product="BEL-41_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MEPSSVIPSSEEDRCGECNGVPYDEMAQCDSCKQWFH
FT                 FDCVDVSVDTVAEDWQCRACHPPPQQAKPGTEDMSVITQEINALRLELANQ
FT                 RKQYREERAAMEAEISRLSCGQQNYSRSQDRNAFEARNLGAHSTRRFSTFE
FT                 NMHELSRSQVAARKVVSGKLPTFSGNPDEWSNFKSRFDTTTRMCGFTDDEN
FT                 VLRLQECLSGRALKMVQRRLNQAENVQQVMADLEKMYGRPEVLVEGILQQI
FT                 RQAALPKVEKMQSMIDFGVAIEELCATIRTQGMHEQNYNTSLLAELVERLP
FT                 PYVRLMWGIHRETSLQKVTLENFGAWMRTITNAAISVTPPPSQEVTKTSAR
FT                 VHTHTETKKKESSCVMCQKNDCPTGADCKKFISSSINERWGYVRKHRLCRT
FT                 CVLRHSGRCNVSSPCGVNGCSAYHNSALHGERPSNPNSTTVLSHSSIFQGT
FT                 LLRYVPVALHGNGKVVRTFALLDEGSSVTLMDHALLKELQLEGKPEPICLS
FT                 WTGDQKRDEHQSQSVAIGISGIDAMSKTYVMPKVHTVAELALPAQTLSVPH
FT                 LAAKYAHLRETKTRSYHHVAPKVLIGINNFHLTRPLKTIEGAIGEPFATKT
FT                 RLGWVICGPHEPSAISTVKPKGVHLCTCSEVDMKLDETLRKYFAADNNSIY
FT                 GDRAKIPSKEEERSLKLLESTTRFVGDRFETGLLWRADEVTLPDNRRMALN
FT                 RLECLEKRLRRDDGLTEVINNKLKEYQIKGYVRKISDEELIATRNNRRKWY
FT                 LPIFPVWNPNKPGKVRLVWDAAAAVRGVSLNTNLLTGPDLLTPLPSVLFRF
FT                 REYRYAFAADIREMYHQVMIRTEDQHSQRFLWRWGDNNREPEEFVMTRMTF
FT                 GATCSPSSAQYVKNLNADRFIAKLPRAVRCIKEQHYVDDLLASTECEEDAV
FT                 KLANEVRDIHAQGGFQLHNWLSNSNQIANNLSGNVAEQREFNSDTVCAQKI
FT                 LGMWWNIQSDTFSFKLIPKQDHDILEGHRIPTKRQILRVLMSIYDPLGLLA
FT                 GFLLYLKVILQEVWRANIGWDEKIPHELFLKWKQWLDGLTLVQKISIPRCY
FT                 RQHIKLQGIETQLHVFVDAGRDGYAAVAYLRFQCGEHTEVSLVGGKAKVSP
FT                 LKYMSIPRMELQAAVIGSRLAQTIQQSHDQRIDQRFLWTDSRDVMCWLHSD
FT                 HRKYSIFVGHRVGEILENTTVSEWRWVPTKLNVADESTKWSNLQQHVNSSR
FT                 WFTGPAFLKESITDWPPVEFLAKETEEEARKTVTLHQALEPIFSFERFSKW
FT                 RRLLRAIGYVWRFINNAKNPSTRCGAALTAKELQQAERSILREVQRQAYPQ
FT                 EYCSLDKQSANEMKPISRIKRSSPLYKRSPFMDQDGILRVTGRIDACVLVD
FT                 PTAKRPIILPKCSVVTDLIVDDFHQRFRHANHDTVINEVRTKYDIPALRSV
FT                 CRRVRKACTFCRIRETIPRTPVMSQLPPARLAAYLKPFSFTGIDYFGPISV
FT                 SMGRGRSEKRWGVLFTCMTIRAIHIEVASSLSTDACILALRNFIARRGTPN
FT                 EILSDQGTNFVGASRELIEAAKNIDSQRLVEEIDCPNTTWTFNPPSAPHFG
FT                 GSWERMIRTVKRTLERMPFRRLPTDAVLNSMLIETENIINSRPLTHVPVDR
FT                 DEDAPLTPNHFLLGTSSGVKPLIPFDDSSATLLNTWRTSQVYTNMLWKKWL
FT                 KSYLPTLTKRTKWFEPCRPVAIGDLVLVVDENHPRNCWPRGRVVEVVQSRD
FT                 GTVRRVTIQTAKGTRLERPVVKVVVLDVGHVNSTTAMEPSHGA"
XX
SQ   Sequence 5559 BP; 1596 A; 1379 C; 1375 G; 1209 T; 0 other;
     ttctaaaaac cgtacgatag tgattgagat cgcgtcgtag ccggcctaaa atcgaaattt        60
     taggatcgag aatcgggacg cttatccgcc atcgcgaaag ccgcgtgtta aaaaacctcg       120
     tgttcgctgc tggaccaaag tacattgaca ccgcgccgga acgattgtgg aatcggaaca       180
     aattcacggt tacgttatcc gttgacgctt aagtatcaac agaaccagtg aatcctacta       240
     agaaccacta atttgctaat cgcttctatg gagccgtcga gcgtgatccc gtcctctgaa       300
     gaggatagat gcggagagtg caacggtgtg ccgtacgacg aaatggcgca atgcgattcg       360
     tgcaagcagt ggttccattt tgactgtgtc gatgtgagcg tcgatacagt cgccgaagac       420
     tggcagtgtc gcgcctgcca ccctccaccg caacaagcga agccaggtac cgaggacatg       480
     agtgtgatca ctcaagaaat caacgcccta aggttagagc tggctaacca aagaaagcag       540
     tatcgagaag agcgagcagc gatggaggcg gaaatcagcc ggctgtcatg tggacagcaa       600
     aactattcac gatcgcaaga tcgaaacgcc tttgaggcta ggaacctcgg agctcattcc       660
     acgaggcgct tttccacgtt cgaaaacatg cacgagttga gccgtagcca ggtagccgcg       720
     cgtaaagtgg tctccgggaa acttccgacg ttctccggta accccgacga atggagtaac       780
     ttcaaaagcc gtttcgatac tactacccgt atgtgcggtt tcactgacga cgaaaatgtg       840
     ttgcggctgc aagagtgttt atcggggcgt gcactaaaaa tggttcagcg tcgcttgaat       900
     caagcagaga acgtgcagca agtgatggcc gacctcgaaa agatgtacgg gcggccagaa       960
     gtattagtcg aaggcatcct gcaacagatt cgccaagccg ctttgccgaa agtagagaaa      1020
     atgcaatcga tgatagactt cggagtcgcc atcgaggaac tttgtgccac cattagaacg      1080
     cagggaatgc acgagcaaaa ttacaataca tcgttgctag cagagctcgt tgaacggctt      1140
     ccgccctacg tgagattaat gtggggtatc catcgagaaa catccctgca aaaagtaact      1200
     cttgaaaatt tcggcgcttg gatgcgtacc atcaccaacg ccgccatatc tgtaacaccg      1260
     ccaccctcgc aggaagtaac aaaaactagc gctagagtgc acacgcatac ggagacgaag      1320
     aagaaggagt cttcatgcgt catgtgccag aaaaacgatt gtcctacagg agcggactgc      1380
     aagaaattta tttcatcctc catcaacgaa cgttggggct acgtacggaa acatcgcttg      1440
     tgcagaacgt gtgtgttgag acattccggc cgctgtaacg tctcgtcgcc gtgtggcgta      1500
     aacgggtgtt ccgcctatca taacagtgct ctccatggtg aacgtccaag caatccgaat      1560
     tcgactactg ttctctctca ctcctctata ttccagggaa ccctgcttcg gtacgtgcca      1620
     gtagcgcttc acggaaatgg caaagtggta cgaaccttcg cgcttctgga tgaaggttcg      1680
     tcagtaacct tgatggatca cgccctcttg aaagagttgc agctggaagg aaaacctgaa      1740
     ccaatttgcc ttagctggac cggtgatcag aagagagatg agcatcagtc gcagtcagtc      1800
     gcgatcggta tttcagggat cgacgccatg agcaaaacat atgttatgcc caaggtacat      1860
     accgtcgccg aattagcgct gcccgctcaa acgctatctg taccgcacct cgccgcaaaa      1920
     tacgctcacc taagggaaac gaaaactagg agctaccatc acgtcgctcc caaggttttg      1980
     atcgggataa acaatttcca ccttactcgt cctctaaaga ccatcgaagg agctatagga      2040
     gagccattcg ccactaagac acgcttaggt tgggtcatct gcggtccaca cgagccaagt      2100
     gcgatatcta cggtaaagcc aaaaggtgtc cacttgtgta cgtgtagtga agtcgacatg      2160
     aagctggacg aaacccttcg caagtacttc gcagccgata acaacagcat ctacggcgac      2220
     cgcgcaaaga ttccttctaa ggaagaggaa cgatccctca aactgttaga atcgacaaca      2280
     agattcgtag gggaccgttt tgaaaccgga ctgctatggc gcgcagatga ggtgactcta      2340
     ccagacaatc gacgaatggc tctgaataga ctggagtgcc tagaaaaacg tctgcgaagg      2400
     gacgatggtt tgacagaggt catcaacaac aaattgaagg agtatcaaat aaaagggtat      2460
     gtacgaaaaa tctccgatga agaactaatc gccactcgta acaaccgtag gaaatggtat      2520
     ttgccgatat tccccgtatg gaaccccaac aaacccggga aagtacgact ggtttgggat      2580
     gctgccgctg cagtacgagg cgtttccctg aacacaaacc tcctgacagg cccagatcta      2640
     ctaacaccct tgccatcagt actctttcga tttcgcgagt atcgatatgc attcgcagcc      2700
     gacattcgcg aaatgtatca ccaggtaatg atacgtacag aagaccagca cagtcaacgc      2760
     tttctttgga gatggggtga caataatcgc gagccagaag aatttgtaat gacgagaatg      2820
     accttcggcg ccacgtgttc gcctagcagc gcccaatacg tgaaaaatct aaacgcagat      2880
     cgctttatcg caaagcttcc acgagcagta cgatgcataa aggaacaaca ctacgtcgat      2940
     gatttattgg ctagcaccga atgtgaagaa gatgccgtaa aactagctaa cgaagtacga      3000
     gacatccatg cacaaggcgg ttttcaactt cataattggt tgtcaaactc gaaccagata      3060
     gcgaataacc tctcgggtaa cgtggcagag cagcgtgagt ttaactcaga tacggtatgc      3120
     gctcaaaaga ttttagggat gtggtggaac atacagtctg acacgtttag cttcaagctg      3180
     attcctaaac aggatcacga tattttagaa ggacatcgta taccgaccaa acgacaaata      3240
     ctacgcgtgc tcatgagtat ctacgatcct ctcggactac tagccggatt tctgttatac      3300
     ctgaaggtta ttctgcaaga agtttggcgc gcaaatatcg gttgggacga gaaaatacca      3360
     cacgagctat tcctgaaatg gaaacaatgg ctagacggct taaccctcgt tcaaaaaatc      3420
     tccattcctc gctgctaccg acaacacatt aaactacaag gcatcgaaac ccagctacac      3480
     gtgtttgtag acgccggtcg agacggatac gcagcggtag cctatcttcg ttttcagtgt      3540
     ggagagcaca ccgaagtgtc cctggtaggc ggtaaagcaa aggtgtcacc gctgaaatat      3600
     atgtcgattc cacgaatgga acttcaagcg gcagttatag gatccaggct cgcccagaca      3660
     atccaacagt cgcatgatca acgaattgac caacgctttc tatggacgga ctcgcgcgat      3720
     gttatgtgtt ggttacactc tgaccacaga aagtatagta tcttcgttgg acatcgcgtg      3780
     ggtgagatat tggagaatac gaccgtcagc gagtggcgtt gggtaccaac taagttaaac      3840
     gtagcggacg aaagtacaaa atggagcaat ttgcaacaac acgtgaattc gagccgctgg      3900
     ttcaccggac cagcatttct aaaggaatct atcacagatt ggccacccgt agagttcctc      3960
     gctaaggaaa ccgaagaaga agcgcggaaa acggttacac tacaccaagc cttagagccg      4020
     attttttcct tcgagcgttt ttccaaatgg agaaggcttc tacgcgctat cggatacgta      4080
     tggcgattca taaacaacgc aaagaaccct tcgacgcgat gcggagctgc gcttacggcc      4140
     aaagaacttc aacaagccga gcgatcgatt ctacgcgaag ttcaacgaca agcctacccc      4200
     caagaatatt gcagccttga caagcagtca gccaacgaga tgaagcccat aagtcggatt      4260
     aagcgtagca gtccgttgta caaacgttct ccctttatgg atcaagatgg aatcctaaga      4320
     gttacaggta ggatcgacgc ctgtgtctta gtcgatccaa ccgctaaaag gccgattatt      4380
     cttccgaaat gcagcgtagt gacggatcta atagtggacg attttcatca acgatttcga      4440
     cacgcgaacc acgataccgt catcaatgaa gtacgaacga aatacgatat tccagcatta      4500
     cgcagcgttt gtcgacgtgt acgaaaggca tgtaccttct gtcggatcag agagacgata      4560
     cctcgtacgc cagtcatgag ccagcttcct ccagcacgtt tagcagcata cctcaagcca      4620
     ttctccttca ccggcatcga ttacttcggc ccaatctctg tttcgatggg tcgcggaaga      4680
     tcagagaaac gatggggtgt gctcttcacc tgcatgacta ttcgcgcgat tcatatcgaa      4740
     gtagcgtcct cgttatcgac cgatgcatgt attctcgcac taaggaactt tattgccagg      4800
     agaggaaccc ctaatgaaat cctaagcgac cagggcacga acttcgtagg tgccagcaga      4860
     gagctgatcg aagccgccaa gaatatcgat tcgcaaagac tcgtagaaga gatcgattgt      4920
     cccaacacga catggacctt caatcctccc tccgcaccgc acttcggagg atcctgggag      4980
     aggatgatac gtacggtaaa gagaactctg gaaagaatgc cattccgtcg tctcccaacc      5040
     gatgccgtgt tgaactctat gctgatcgaa acagagaaca taatcaactc acgtccctta      5100
     acgcatgttc ccgtagatcg agatgaagat gccccattaa cccctaacca ttttcttcta      5160
     ggaacgtcat ccggtgtaaa accgttgatt ccgttcgacg attcctcggc gacacttcta      5220
     aacacctggc ggacatcaca agtgtacaca aacatgctgt ggaagaaatg gttgaagagc      5280
     tacctgccaa cactcacgaa gagaacgaaa tggttcgagc cgtgccgtcc agtcgcaatc      5340
     ggagaccttg tgctggtggt ggacgaaaat caccctagaa actgctggcc tcggggtaga      5400
     gtggtggaag tagtgcaatc acgagatgga acagttaggc gggtaaccat tcagaccgca      5460
     aagggcacgc gattagaacg accagtagtg aaggtagtag tgttagacgt cggacatgta      5520
     aatagtacca cggcaatgga gccgtcgcac ggggcggag                             5559
//
ID   BEL-41_AnFu-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-286
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 743-743 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 286 BP; 97 A; 54 C; 70 G; 63 T; 2 other;
     tgtcaacaat aacggcgcta ttgttgacat gtccgacaaa aacgtcaaat acgcgcttcg        60
     gggaatccgt tacgcactta cgcaacggga gagaaatggg agagagaatg agagagagta       120
     attaggtaat aaaagggatc gtattcgttg cgtgcgakga agacgaatag aaaagaagca       180
     caaaacggta cggtttttag cacagcttaa aaaagtatcg cctgtttcct tttataaaaa       240
     ktattcgtgt ccgaaaaaag tacccctgtt cgcgccgctg cgaaca                      286
//
ID   BEL-41_CQ-I repbase;    DNA;    INV; 1907 BP.
XX
AC   AAWU01003534;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_CQ_;
KW   BEL-41_CQ-LTR; BEL-41_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1907
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 235-235 (2011).
XX
DR   Genome; AAWU01003534; Positions   70049   71955.
XX
CC   'GGCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..1906
FT                 /product="BEL-41_CQ-I_1p"
FT                 /translation="MPIANSRELPCRRCGTPDVYTMWSYCRCRSGLPDANA
FT                 TRNASLPSGSTKISHQYRQECREVYAARLQQLRQDQLAAQEALATKQREWL
FT                 EIQARIKRDYQIAKAELQQKVEECENSFRLREEQIMSSGRFEVRGTITQQS
FT                 AENKKEDEQHRVLFCESSNSTVEATKTTVQSGQDNPIGSTSGVGAGVDSNK
FT                 PSAGKSTSVRTFAGVSRNDADWMSSLGETTCRGWEAAKTAVSSLPFTLTPT
FT                 VQTCVNDNNTHKSISSSCIFVNEPSLSRNKRSASKTNVVESCLQDVAAQLE
FT                 VEFGGLVSSKKLIQDQLMVNRESGQQKLSYQQEQRSIPERAFQDRDTQRLP
FT                 ERRNQQVPPLQDTGSPLVFFSMTQRGRLNPKGKSHDEPMFICTSITIGRWN
FT                 EYSGAENFEKERKLVGQPGQNERQMSSSMQQKGMCGVSATWHEQLDKLFVL
FT                 KIVLPNSETWDKSMFIHGTKWFSGVTAGRMMFPLQLQEGDRNNPGYTKAIN
FT                 QQYSRKSQSVVEAVVVPEVQHEIVRLWFNKNVDRNQVGVPMTAVSHSTAKI
FT                 GDGELGRSGSYRSRTLLGQFPRQKKIQWFQIDPGGKSSSDAGSSSTRAMQL
FT                 VGQLSVTSAASTRGGNSGPERWTTLTVGE"
XX
SQ   Sequence 1907 BP; 552 A; 422 C; 543 G; 390 T; 0 other;
     ctaaaagaaa atagttccga tcaagatgcc gatcgcgaac agccgggaac ttccctgccg        60
     gagatgcggt acaccggatg tgtacacgat gtggagctac tgtcgatgcc ggtcggggtt       120
     gcccgacgca aacgctacca ggaacgccag tttgccaagc ggttctacca aaattagcca       180
     ccagtatcgc caagaatgca gggaagttta cgcggcacga cttcaacaat tacgccagga       240
     tcaacttgct gcccaggagg cgttggccac gaagcagcga gaatggcttg agatacaggc       300
     gcggattaaa cgggactacc aaatcgccaa agcggagctg cagcagaagg tagaggagtg       360
     tgaaaactcc tttcgattac gggaagagca gattatgagt tcgggacgtt ttgaggttag       420
     aggcacgatt acacagcaga gtgcggagaa taagaaggag gatgagcagc atcgggtact       480
     attttgtgag tcttccaact cgacggtgga ggcaacgaag acaacagtac aatcgggtca       540
     ggacaaccca atcggttcga catctggagt aggtgccggg gtggatagca acaagccatc       600
     agccggcaaa tccacttcag taaggacgtt tgctggtgtg tcccgaaatg acgcggattg       660
     gatgtcatcg ttgggagaaa ctacatgtcg aggctgggaa gcagcaaaaa ctgccgtcag       720
     ctcactaccg ttcacactca cacctactgt acaaacgtgt gtaaacgaca acaacactca       780
     caaatctatc agtagttctt gtatttttgt aaacgagccc agtttgtcga gaaacaaaag       840
     atctgcgagc aaaacaaacg tcgttgagag ttgtttacaa gatgtggcag cacagctgga       900
     ggtggaattc ggcgggttgg tgtcgtcgaa gaaactcatt caggatcagc tgatggtgaa       960
     tcgggaatct ggacagcaga aactcagtta tcaacaggag cagcgatcga ttccagaacg      1020
     agcgtttcag gaccgggaca cgcagcgttt gccggaacga cgaaaccaac aagtaccacc      1080
     tctgcaagat actggttcgc cgcttgtctt tttttcgatg acgcagcgag ggcgactaaa      1140
     cccgaagggc aagtctcacg atgagccaat gttcatctgc acgtctatca ccatcggtcg      1200
     atggaatgaa tattccggtg cagagaattt tgagaaagag agaaagctgg ttggacaacc      1260
     agggcagaat gaacgccaaa tgagttcatc aatgcagcag aaggggatgt gcggagtctc      1320
     ggcgacatgg catgaacaac ttgacaaact gttcgtactg aaaatcgtgt tgccgaattc      1380
     cgaaacatgg gataaaagta tgtttatcca tggtacaaag tggttcagcg gtgtgacagc      1440
     tggcagaatg atgttcccac tgcagctgca agaaggtgat cgcaacaacc caggatacac      1500
     gaaagccatc aatcaacagt actcacggaa gtcgcagtcg gtcgtggaag cggttgtggt      1560
     gccagaggta cagcatgaga tagtgcgttt gtggttcaac aagaatgttg acaggaatca      1620
     agtgggagta ccgatgactg ctgtttcaca ctcgactgca aagatcggag atggtgagct      1680
     gggacggtct ggatcgtacc gtagcagaac tttgctgggt cagtttccta gacagaaaaa      1740
     gatccagtgg ttccaaatcg atcccggtgg gaagtcatcg agtgatgcag gttcttcgag      1800
     taccagagca atgcaactcg taggacaact atcagtaaca tcggctgcta gcacgagagg      1860
     aggtaacagt ggaccggaac gctggaccac tcttacggtc ggggaaa                    1907
//
ID   BEL-41_CQ-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   AAWU01003534;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_CQ_;
KW   BEL-41_CQ-I; BEL-41_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-493
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 236-236 (2011).
XX
DR   Genome; AAWU01003534; Positions   69556   70048.
XX
SQ   Sequence 493 BP; 163 A; 78 C; 111 G; 141 T; 0 other;
     tgttgccgct gaaattgccg atgtgcttac gaactcgaag atcttaacgt agggttaggc        60
     gatggtgagc aacggtctat atctaggtga gcgatagcga ataagaagag ttaacgcaca       120
     agaatagtag gcgagtaatt tgatattctg tttaatctca gttaaagccg acttattctg       180
     agatgtccaa tcaggatagt gcatttgaat tgtagaaaag tcagtgaaaa gaattcatga       240
     gtaagttggt gggcgtaaac tgcaggagga aaaattaaga attatttgtt acagtttcgc       300
     aacgcaccaa attgctgctc taagttggga atgaagttgg gttaggaaac ctattttgtg       360
     agtaaaatta tatctagttt aaccaaatta ctaatattta ataaacagct tttagcaatt       420
     aagatcacta aaatgaacgg tgtttcttgt tcgctgaaaa gacggcaaat ccagccctcc       480
     cccaacgtca aca                                                          493
//
ID   BEL-41_DTa-I repbase;    DNA;    INV; 3033 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   23-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3033
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5687-5687 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 3033 BP; 899 A; 755 C; 496 G; 882 T; 1 other;
     tttgatccat cgaccggata tttccgacca gcgttcagca gcagctacgg tggcttgacc        60
     cgcttcagat aagtgcttgc cgattcttat tatttgccgg tcatacagca agttgttcga       120
     accccatttc gttcaacttg ttgtatgatt tcttgtctaa atccaaaaga gatttaatcc       180
     gacgcaacgg catttaatat atatatattc caatatatac tccaattcct tttgtttgtg       240
     agcagcaatt tttccatttt ttccgttccc gaaatttcgt acactcgaaa ttattacatt       300
     gccgttcaca catttccaaa tccttagtgc caaagatttt tccaatattg tgcacataca       360
     aagcaaataa ttaacagttc cagttccaca caaccatttt tatattttat ttaaaaaaca       420
     aatatattcg tgttctgtga attccattta ttttccaagt gtgtgtaaaa atatataatc       480
     cagccacagt gaacatttca aattcaaagt gatccgccga aattggcagc tttcgttttt       540
     ttgtactgtg tttcctgctg cgtgcatata tttttacata tgtaaatatt tcaaaataca       600
     gtccactccg actactattc aaatacagtc cacttcaaat acaatttcga atacggtcca       660
     catcaacata gtttttttct acgatcaatc ccaaattatt tccaagtcca aatacaaagc       720
     ttaaatttct aataatttac accggcaatt actttgtgca gcagacaaaa atatacatac       780
     atatatacat aagtcgcaaa aactcccgca atcggtgccc tttctctatc cagctgttct       840
     ctgcagacat acgtactcga agtctccaca attcccgcaa tccgctatcc atctggttcg       900
     ttacatacgt acgaactctt acatattccg aaacgcaccg tggttccagg gtaccaaaaa       960
     aaataacgaa tattattcgt tcaaaatata cttgagaaaa acaaccatat taattacgaa      1020
     ataacttcta ctaaaactag tacataaata ttcgatccga ttccattcgt acagtgtgac      1080
     cgtactttcg tgaaaacttt aattatttat ttaattaata tttatttttt atcttagtcc      1140
     aaatcattca aaaattccac gacaaattct aaagtggccg tatatccttg cgactatcga      1200
     ttggttccta aaactccaat tcgcatctga aaaattacta aatttttttt ttttttaaaa      1260
     ataatttttt gtgtgatcaa tttaaatttt actttttatt cgtaatggca accgcagctt      1320
     taaacaaatt tattgctaca gctgacactc tcagtcattt tgaagccaca ttaaatgttc      1380
     ccggtgcatc cacaccaacc ttatccgcct gcaaaatccg tagggagcac gtcagctcct      1440
     tatggcaaaa ggtaaaggag gcatacgaca catgctccga atgcattgtg gctgcaggcg      1500
     agagcgccgc agacgccaaa tccattctta aagcgaaata caacgaaacg tacgatgtat      1560
     acgaaaagtt cgccgctcag attctcgagc aaatcgaaat ccaacagggc tccacccaag      1620
     tatctcaagc tccagtaact ccgtcccaaa gttcaagatc ttatggctgt cgactccctc      1680
     ctatcgacac agaggttttc tcgggcgatt atcttcgctg gccgactttc cgggaccttt      1740
     tcaaggcgat atatatagac aatcctagtc tcacttccgt tgaaaagtta tttcatttaa      1800
     attcaaaaac tagtggcgaa gctcattcca tagtttccag atccccactc accaatgaag      1860
     gctttcgctc agcttggaca aatctcactg agcgtttcga aaataagcga ttgcaggtta      1920
     acagccacct taaatccttt ttcaatgtgc aatccatagc acaagagtct ggagcagcct      1980
     taaaggaact tcaacacacc attcaaggtt gcttaacgtc cttacaaatt tccggcatta      2040
     acattgagaa ttgggaccct atcctcgttt acatgtgctc cacgaagctt ccaaagctca      2100
     cgctctcatt atgggagcaa tccatccaaa ataaagccga aattcccact tggctcgagc      2160
     ttaattcctt cttaactaac cgccatcgaa ctctagaggc cgtcgatagc atccggcctg      2220
     ctaatttact taaagtccag tccaaagcca caaatgcatt ggcagaactt ccaaaaataa      2280
     attcattttc cacgagggta cttccaatac ccaaaggctg cgatctgtgt ttaaaggaaa      2340
     aacaccccat tcgtatatgt ccacgctttc tccaaatgca gttaaatgat cgtttagcct      2400
     acatccaaga taaacagcta tgctccaact gctttgcaag cagccataaa ttgcaggatt      2460
     gcacaagccc taacacttgt ttcacttgcc aaagtcgaca tcatacgctg ttgcatccaa      2520
     gcaacaattc tacaatgact tcgattgcat ccagacctcc agagccagta tcggcctcaa      2580
     tcccatacag aatttcgtcc ttctcagcgc gtgtttccaa cgcgtgtggg actaatagaa      2640
     tttccgatcc ggacccgatt ataagggtcc ttcctacaaa gaattccgac tattgggttc      2700
     catatcccgc cttggatggc agacgttccc gaggtattaa atcctaccaa tgccgagtct      2760
     gccaaaagat ccatccgcta cggaaatgcc accgctttct gcggcttagt gccgagaaac      2820
     ggctccagga agtacgtatc cacaagtact gttccaattg cttggcccac gatcattccg      2880
     aggactcctg ccgcagtgat gaccactgcc acaagtgtgg aaagggccac cacactctac      2940
     tacataagga agaccgatcw tcgcttcaat catgttcctg agtctactct actgagggtc      3000
     ttgctacggt ggtcctcgca agggggggga gaa                                   3033
//
ID   BEL-41_DTa-LTR repbase;    DNA;    INV; 313 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   23-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-41_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-313
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5664-5664 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 313 BP; 70 A; 106 C; 54 G; 83 T; 0 other;
     tgttcacgcc aaaagggcgt ttaatttcgg caggcagtgt tgagcggcag ttttctccag        60
     atctccacat ctcgctcgct cgcactgccc ttcgctctcc ctctccaact ctcccccaag       120
     tctccgctcc actctggagc cactaagctt agattattgt aattagttcc aatttacaag       180
     tgtaataata aacagccgca cgtcgcgcaa taccccgaaa agttctcccg tgttttcgaa       240
     acttatttct gcgcggatcc atttccctgg gactcatcat cgctcctaca atcaagccac       300
     ccccgcccca aca                                                          313
//
ID   BEL-42_AA-I repbase;    DNA;    INV; 5904 BP.
XX
AC   AAGE02017346;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_AA_;
KW   BEL-42_AA-LTR; BEL-42_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5904
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017346; Positions    8551   14454.
XX
CC   'AACTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..4146
FT                 /product="BEL-42_AA-I_1p"
FT                 /translation="MVGCDGCNNWYHYRCVGVDGSDIQRQEKWFCPTEACQ
FT                 KAEVIAKKSEENRKRGSKGKKSLGVDNTSDKSSAKSDHLSGSSFEKKLKAL
FT                 EKEQRSKEREIEEERQLWEKRMVMERILKEKRLQMEAEMRQREMKQEEELL
FT                 QKALREKQEHLDRMERMRKEYQAKMADVERKLNTSGFEEMGLEKSQGCKVR
FT                 MASLKLQERAGGINGKGSEQLGKVFEADDQEEEESSDEYSGESTSSEGEGC
FT                 DEEYEEESEVESEADERVSRKKNRKQINKKGVPHGLGRQSAGPTKAQIAAR
FT                 NGISRKLPIFSGKPEEWPLFIGSYEASNKACGYSDIENLVRLQECLKGPAL
FT                 ESVRGQLLLPKSVPKVIEKLRQLYGRPEQLLQFHLEKVNRLESPKAERLET
FT                 FIPFGNAVEQLCDHLEAADLKQHLVNPLLLQNLLDKLPSADKREWVRFKSN
FT                 KRKVNLRTFSDFLSRIVSEACEANACGAVKVNETRNMKSGRVGMKEKGAIY
FT                 IHSTASNSRDSTPLGNPPSGSVKPCKACKRTDHRLRFCQDFRAMTFADRMK
FT                 VVEKGSICQICLNEHGRAPCKFKIRCDVEECNERHHPLLHPVGARVVMNTH
FT                 FQIQGAILFRMVPVTLYSGNRMVKTLAFLDEGASITLVERSLTDKLGVVGV
FT                 HEPLTITWTADVTRDERNSTKMNLWVSGSEEKILLKAVQTVKQLLLPKQSV
FT                 DIGEMSATYRYLRGVPFSSYPSQRPGMLIGLNNLHAIAPMEAKIGQQGEPI
FT                 AVKSKLGWAVYGPTKKLQDGQSFMGYHHTVSNEDLHDLLREHYAMEESVVA
FT                 ISQESKEERRAREIMEQTTVRIGNRFEIGLLWRTDEQQFPNSYPMAVRRMK
FT                 QLEQRLMKTPDLMDNVRKQIVEYQQKGYAHMATPEELAGFDPCSSWFLPIN
FT                 VVLNPKKPGKVRLVWDAAATVNGVSLNSQLLTGPDLLTPLPSVINRFRERP
FT                 IGFGGDIREMYHQILIRKADRRAQLFLFRNTPDQPPSVYVMDVATFGSKCS
FT                 PSQAQYVKNRNASEFSKQFPEAAVAIEKKHYVDDYFDSVDTVEEAINRAKE
FT                 VRFIHSKGGFEIRNWVSNSGTFLDELGEAKVSQAVHLNRDKDSGTERVLGI
FT                 VWDPKDDQFSFSTDHRHDVKPYLLEGVRPTKRIVLSSVMGFFDPLGLLTPF
FT                 TIHGKLVVQELWRTGCDWDEEIDDDSLAKWDRWTGLLPIVSEIRIPRCYFE
FT                 GSLSTSFESLELHIFTDASIHAYGCAAYLRAVIDGSIKCSLVMSRSKVSPL
FT                 KLQSVPRLELMAAMLGARMMHTVKSNHSLPITRQILWSDSQTVLSWIRSDQ
FT                 HRYKQFVAFRIGEIVELTTSSDWRMSHRIKTSQTS"
FT   CDS           4176..5903
FT                 /product="BEL-42_AA-I_2p"
FT                 /translation="MSDGPCFNGPHFLYEAENMWPEQVRTEVHNPEEMKAC
FT                 VLFHGTAFSTPLIDVYATSRWRKLVRIAACVVRFVENCHRKRSGEPILVTK
FT                 AHSSLERCIKGNPKRIVQPLCQEELHSGEIILLKQAQHDSFPEEIKVLEAR
FT                 RDFNSTACVEKSSWLYSLRPILDADGIVRMDGRLALSKAIQFDQKFPIILP
FT                 RRHEVTLKIIQSYHEKFGHANRETVFNELRQRFYIPKLRSVITSVVKGCNW
FT                 CRVNRCQPQVPLMAPLPVQRVTPQLRPFCSVGVDYLGPVEVSVGRRKEKRW
FT                 IALFTCLAVRAIHLEVVHSLTTEACQMAIRRFICKRGSPNEFFSDNGTNFK
FT                 GASNEMIRAMERIKMECAENFVSPAIKWHFIPPSTPHMGGVWERMVKSVKE
FT                 ALKAINDGRKLTDEVLLTTLFEAEDMINTRPMTYLPQDSGVEAITPNHFLR
FT                 GIVKEIDQRVVHVEVGEALRNLYKRSQYLADKMWQRWVNEYLPNINRRTKW
FT                 HDERGKLKVGDLVFVVDGNQRKNWSRGVVEDIIEGADGNIRQAMVRTVKGV
FT                 LRRAVANLAVVEIPGKTGTDEAEPELRAG"
XX
SQ   Sequence 5904 BP; 1752 A; 1191 C; 1614 G; 1347 T; 0 other;
     aactcaaaaa agatatgtcg gatttggaag cctcaaaaat gagtgtgaat ttcacaatga        60
     cggcctgcgc tgcatgtaca atgacctcag acaccagatg aagggatggt tggttgcgat       120
     ggatgtaaca actggtacca ctaccggtgt gttggtgtag acggatcgga catccaaagg       180
     caagaaaagt ggttctgccc gacggaagcc tgtcagaagg cagaagtcat agcgaagaag       240
     tcggaagaga accggaagag aggatcgaaa ggtaagaagt ctcttggcgt agataatacc       300
     tccgataagt ctagcgccaa gtcggatcac ctttctggct cgtcgttcga gaagaagctg       360
     aaagctttgg aaaaggagca acgatcgaaa gaaagggaaa tcgaagaaga acgccaactc       420
     tgggagaagc gtatggtgat ggaacgtatt ttgaaggaaa aaaggctaca aatggaggcc       480
     gagatgcgtc agcgcgaaat gaagcaggag gaagagttgt tgcagaaggc gttgcgggaa       540
     aagcaagaac atttggatcg catggaacga atgcggaagg aataccaagc gaaaatggca       600
     gatgtggaga ggaaattgaa tacttccggg tttgaagaga tgggattgga aaaaagtcaa       660
     ggttgcaaag ttcgtatggc gtcattgaaa ctgcaggaga gggctggagg aataaatgga       720
     aaaggatctg aacagcttgg gaaggttttc gaagcggatg accaggaaga agaagaaagc       780
     tcagatgaat atagtggaga gtcaaccagc tccgaaggag aaggatgcga tgaagaatat       840
     gaagaagaat ccgaagtgga gtcagaagct gatgaaagag tgtcaagaaa gaagaatagg       900
     aaacagataa acaagaaagg agtaccacac gggctggggc ggcagtccgc aggtcccaca       960
     aaagcacaaa tagcggcgcg taatggaatt tccaggaagc ttcccatatt ttctggtaaa      1020
     cctgaagagt ggcctctttt cataggcagt tacgaggcat cgaataaagc atgcggatat      1080
     tctgatatcg agaacctcgt aaggctccag gaatgcctta aaggaccagc tctggaaagt      1140
     gtccgcggac agctgttgct gccgaagtcg gtgccgaagg tgattgagaa attgcgacaa      1200
     ctgtacgggc gaccggagca acttctgcag ttccatctag aaaaagtaaa ccggttagag      1260
     tcaccgaagg ccgaaaggtt ggaaacgttt attccctttg gaaatgccgt agagcagcta      1320
     tgtgaccacc ttgaagctgc tgacttgaaa cagcatcttg tcaatccgtt gttgcttcaa      1380
     aatttgttgg ataagctgcc atcagcggat aaaagagagt gggttcgctt caaaagcaac      1440
     aagaggaaag ttaatttgag gacgttttcc gattttttgt cacgaattgt atcggaggct      1500
     tgcgaagcca acgcatgcgg tgcggtgaag gtgaacgaaa cacgaaatat gaagtccggc      1560
     agagttggaa tgaaagagaa aggcgcaatc tacatccata gcacagcatc aaattcaagg      1620
     gacagcacac cccttggcaa tcccccaagc ggaagtgtaa aaccttgcaa agcttgcaag      1680
     cgtactgatc atcgtttgcg gttttgccaa gacttcaggg cgatgacatt tgctgatcgg      1740
     atgaaggttg tggaaaaggg cagcatctgc caaatctgtt tgaacgaaca tggaagagca      1800
     ccatgcaaat ttaaaattcg ttgcgacgtt gaagaatgta acgaacgcca tcatccgctc      1860
     ctacatccgg ttggagctag ggtcgttatg aacactcatt ttcagattca aggagcaatc      1920
     ctattccgga tggtcccggt gacgttgtac tctggcaatc gtatggtaaa aactctagca      1980
     tttttggacg aaggggcgtc gataacgtta gtggagaggt cgctgaccga taaattaggc      2040
     gtagtaggag tccacgagcc gctaacaatc acctggacag cggacgtcac acgggacgaa      2100
     agaaattcaa caaaaatgaa cctctgggtt tctggaagtg aagaaaagat ccttttaaaa      2160
     gcagtgcaaa cggtaaaaca acttttgttg ccaaagcagt cagtagatat tggggaaatg      2220
     agtgcaacgt atagatatct tcgaggtgta ccattctcat cttatccaag ccaacgtcca      2280
     ggtatgttga ttggcctgaa caacctgcat gctatcgcgc caatggaagc caaaattggt      2340
     cagcaaggcg aacctatcgc tgtgaaatcc aaactcggtt gggcagtgta cgggccgaca      2400
     aagaagcttc aagatggaca gagtttcatg ggttatcatc acacagtttc caatgaagat      2460
     ctacacgatc tcttgcgcga gcattacgcg atggaggagt ccgtggtggc catatcacag      2520
     gagtcgaagg aagaaagacg ggctcgtgaa attatggaac aaaccacagt ccgaatcggt      2580
     aatcgctttg aaataggtct gctgtggcga actgacgaac aacaatttcc aaatagctac      2640
     ccaatggcag tgcgccgaat gaaacagttg gaacaacgtt tgatgaagac gccagacttg      2700
     atggacaatg tacgcaagca gatcgtggag taccaacaga aggggtatgc gcacatggca      2760
     acgccagaag agttagcggg gttcgatccg tgttcttcat ggtttcttcc tatcaatgtc      2820
     gtactgaatc cgaagaaacc tgggaaagta cgactggtat gggacgcagc agcaacagtg      2880
     aatggtgttt cactgaattc ccagctgttg accggtccgg atttgcttac tccgttacca      2940
     agcgtaatca accgtttccg agagcgacca atcggtttcg gaggcgatat acgcgaaatg      3000
     tatcaccaga tactgatacg aaaagccgac aggagagctc agctattcct tttccgaaac      3060
     actccggatc aacctcccag cgtatatgtc atggatgtcg ctactttcgg atcaaaatgc      3120
     tccccgagtc aagcgcaata cgtgaaaaac cggaatgcta gtgaattttc aaaacagttt      3180
     ccagaagcag cagttgcgat agaaaagaaa cactacgtgg atgattattt tgacagcgta      3240
     gacacagtcg aagaagccat caacagagcg aaagaggtcc gatttattca ttcgaaaggc      3300
     ggcttcgaga ttaggaactg ggtgtctaac tctggcactt ttctcgacga actgggtgaa      3360
     gcgaaagtgt cgcaagcggt gcatttgaac cgcgacaagg acagcggaac agaaagggtg      3420
     ctcggtatcg tctgggatcc aaaggatgat caattttcgt tttcgacgga ccatcgacat      3480
     gacgtgaaac cgtatcttct agaaggtgtt cgtccgacaa aaagaattgt tcttagtagt      3540
     gtcatggggt ttttcgatcc gcttggtttg ctcacgccgt tcacaatcca tggaaaatta      3600
     gtagtccaag agctgtggcg aactggttgt gactgggatg aagagataga cgatgatagt      3660
     cttgcgaagt gggatcgctg gactggatta ttgccgatag tttccgaaat tcgaattccg      3720
     cgttgttact ttgaaggcag tctttcaacg tcgtttgagt cgttggagct ccacattttc      3780
     actgatgcaa gcattcacgc ctatggttgc gcggcatact tacgagcagt gattgacgga      3840
     agcatcaagt gttcgctggt tatgtcccgc tcaaaagtgt ctccactgaa actacaatct      3900
     gttccccgcc ttgaattgat ggcagctatg ctaggcgcaa ggatgatgca cacagtaaaa      3960
     tccaatcatt cactgcccat aacaagacag attttgtgga gcgattctca aacggtcttg      4020
     agttggatac gatcagatca acatagatat aaacaattcg ttgccttccg tataggagag      4080
     atcgttgagc taacgacatc aagtgactgg aggatgtccc atcggataaa aacatcgcag      4140
     acgtcgtgac aaaatgggga tcaggaccgc ctttgatgtc tgacggtccg tgttttaacg      4200
     gacctcattt cctgtacgag gcggagaata tgtggccgga acaagtgaga acggaagttc      4260
     ataatccgga ggagatgaag gcgtgcgtcc tgtttcacgg cacggcgttt tcgactcctc      4320
     tcatcgacgt ttacgctacg tcacgatggc gtaaattagt tcgaatcgct gcttgcgttg      4380
     tacgcttcgt tgaaaattgt cacaggaaaa gaagcggtga gccaattcta gtgactaagg      4440
     ctcatagctc gctggaacga tgtataaaag ggaacccaaa gcgaatcgtg cagccgctgt      4500
     gtcaagaaga gcttcattct ggtgaaatta ttctactgaa acaagctcaa cacgacagct      4560
     tcccggagga gatcaaggtg ttggaagcta gacgggactt taactcaacg gcatgcgttg      4620
     aaaaatcgag ctggctctac tcgttacgtc cgattcttga tgccgacggc attgtcagaa      4680
     tggatggcag attagctttg tcaaaggcaa ttcaattcga tcaaaagttt ccgataattt      4740
     tacctagacg ccacgaagtg acactcaaga tcattcaaag ctaccacgaa aagtttgggc      4800
     atgcgaatcg ggagaccgta ttcaatgagc ttcgacaacg gttctacatt cctaagctac      4860
     ggtctgtgat aacgtcagtc gtaaaaggct gtaattggtg tcgtgtcaat aggtgtcaac      4920
     cacaagttcc attgatggca ccgcttccag ttcaacgagt cactccgcag ttgcgcccct      4980
     tctgctcagt tggcgtcgac tatctcggtc cagtagaagt atcagttggt cgacgaaagg      5040
     agaaaagatg gatcgccttg tttacttgct tagcagttag ggcaatccac ctggaagtag      5100
     tacatagcct gactacagaa gcatgtcaaa tggcgatcag acgatttatc tgtaagcgag      5160
     gttctccgaa tgagtttttc tcggataacg ggacgaattt caagggcgca agtaacgaga      5220
     tgatacgagc gatggagaga atcaaaatgg aatgtgcaga gaacttcgtt agtccggcga      5280
     tcaagtggca tttcattccg ccaagtactc cccacatggg tggtgtgtgg gagaggatgg      5340
     ttaaatcggt caaggaggcg ttgaaggcga taaatgatgg taggaagctt actgatgagg      5400
     tgctgttgac cacgttattc gaagcagaag acatgataaa cacacgtccg atgacatatc      5460
     ttccgcaaga ttccggagtt gaagcaataa cgccaaatca ttttttgcgt ggaattgtca      5520
     aggagataga tcaaagggtt gtgcacgttg aagttggaga agccctacga aatttgtaca      5580
     aacggtcgca gtatctggcc gacaagatgt ggcagaggtg ggtaaacgag tatttgccga      5640
     atatcaatcg gcggacgaag tggcacgatg agcgagggaa gctgaaagtt ggggacctgg      5700
     tgttcgttgt cgatggaaat cagcgaaaga actggagccg tggagttgtc gaagacatca      5760
     ttgaaggagc tgacggaaac atacgacaag cgatggttcg gacggttaaa ggcgttttaa      5820
     gacgggctgt agcaaaccta gcagtggttg agattcctgg taaaaccgga accgatgaag      5880
     cggaaccgga gttacgggct gggg                                             5904
//
ID   BEL-42_AA-LTR repbase;    DNA;    INV; 652 BP.
XX
AC   AAGE02017346;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_AA_;
KW   BEL-42_AA-I; BEL-42_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-652
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017346; Positions    7899    8550.
XX
SQ   Sequence 652 BP; 224 A; 95 C; 135 G; 198 T; 0 other;
     tgtgaaaaac ccactgagct ggccgcacgg tttggctcaa ttacccgtcc atagcgatac        60
     gaggtcgtta ggatgactta gtggatagag taggattaca ggaaagagac tcaaaacaaa       120
     aataaaattg aacttagtag tgtgaacatt tgaagaatta gaataaatta ttatagcctt       180
     gtttaatcgc ctatttgcaa cggtgtgaat aattaatagg ttgtgatctg tgcctagtgt       240
     ttaccaagtt ttaaacaggt aaatttgaat tgagtgcatt tgaaatcaat attgaaattg       300
     tatgattact tatggctagg ttacattgga agacaacaca accgttttcg tacgttctca       360
     aacctagatt tactatcgga catagttcta aaccgtgagt aaataatcaa ttagattaca       420
     gatggagaat taaatttaat actatgttta ggctagcgtt gtgaacaagt cgagatctag       480
     gaaggcgatt ggtcagaatc actcattgca agaggtgtta aggagaaact atctttgtaa       540
     gtaagaacaa aatttgttaa attgatgaga aactactgga tattaaaatt tacagtttga       600
     gctgcttgta agctgctaca aaactttagc gtattccacc gaattccgaa ca               652
//
ID   BEL-42_AnFu-I repbase;    DNA;    INV; 5841 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5841
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 689-689 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..5816
FT                 /product="BEL-42_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSRTPIPNQGAPICEGLELLPPSVSRPSSIRGSGRNS
FT                 TDPLANSTIRPTEAGRASSRPSSRASSTRNETLNELVRRAREAKRELQAIE
FT                 REIAEVVVDTTSSIAEKEDEIDQWLRDTDRIGETDQRQPVVRAQATAKRPV
FT                 QPQSSFLPPYIIDVPPRNTSVRNPAARSTAIEEEMERIDKQCEQQLLEERL
FT                 LAIERCEQRRMAEKKRLLEESMRPTTSSPKPRVEPYRPAVSFVPVKPAETT
FT                 QQSAYNHTTSFPTFSQCQISARKCTSKELPAFSGNPKEWMAFISYYEHSTA
FT                 ICGYTNGENMLRLQACLKGKAREAVASCLLYPDSVPEAIEILKECYGRPEL
FT                 VVNTLMANIRRTPPIKDDSFDTLVDYGVAVRNFCASITGSGLHNYFDGGPL
FT                 LEELVDKLPPYVRLNWYYYQNGHTHVTLATFNEWTKELVRAASRGVKHTSG
FT                 RKDVKTDTSHRQHDRKYAHQNVHSTGPVIKPAAKPTVAEGDTKRCDGCQES
FT                 GHELSDCSKLQSMSVSSRWTLIKREGICRTCLRKHQGSCTVDALCGVSGCE
FT                 RRHHRLLHSANSNQFHPGTRQEAGRVNTNCNVHAAASGGVMLKYVPVTLHG
FT                 NGTKVDTIALLDDGSSATFMEHDLLRELGISGKPRPLCISWTGNQTRVEDE
FT                 SVELSVKISGTGASNVYDMPAVHTVRTLGLSKQSLIPAQLAAKYKHLMGLP
FT                 LPSFKNASARVLIGVDNYFLSQTLKTVERGADEPAASKTRLGWVVYGPCKT
FT                 STNTADTMKDMNVHICPCNKERDDEMDRALRRYFSFESLGVYHPAKSLRSD
FT                 DEERALNILTSTVRLLDRRYEAGLLWKFESTKLPDSRAMALKRHDCLERKL
FT                 RRDPVLAQAMHTKIQEYEQSGYIRKLSQTEQSIKEPHDWYLPIFPVINPNK
FT                 PGKVRIVFDAAAKVNGISLNSVLLTGPDQLVGLLTVLYKFREYKVAVTGDI
FT                 REMFFQVRMNKRDQRSQMFFWNDGKIGSTPQAYVLCVMTFGAACSPSTAHY
FT                 VKNTNADRFLDGYPRAVECIKYEHYVDDMLASIETEEEAIKLARDVRFVHS
FT                 QGGFEIRNWLSNSARVKTTMNGTDSESNNVPIEMEMATEKVLGMWWNTETD
FT                 VFTFKISKRYDPQLIFDGRAPTKREILRLLMSIYDPMGLIGHLLMYLKILL
FT                 QEVWRTKIMWDEEIVGILLEKWHVWLSVLPSIQEVSIPRCYRQTTTAKGTT
FT                 VELHVFCDASENGMAAVAYFRFEGSGLIECALVGSKTKVAPLTFTSIPRLE
FT                 LQAAVLGARLANTIKTSHRLHITREVFWTDSKTVMCWINSDHRRYSQFVAV
FT                 RISEIVETTNAANWNWISTKTNVADEGTKWQKLPDLNPGSRWFRGPDFLWK
FT                 PTNLWPNTTMESSETDEEVRHQLLHHTLDSPLIDFTRFSKWKRLQRTVAYV
FT                 YRFMRNCQARTSKGAKQTGALAQEELEFAEYAIYRQIQNEEYADDLRRLSD
FT                 GELQRHPWKQPIKKSSTLYKLSPLVDKHGILRMKGRIDKCVWVGDDTKRPI
FT                 IIPNRHYVTGLLISWFHENYRHANHQTAINEIRLKYHIPQLKATYSRVCRN
FT                 CQHCKVHRAIPQNPAMGNLPYQRLAAFQHPFSYTGIDYFGPMIVAVGRRTE
FT                 KRWGVIFTCLTTRGIHIEVANSLSTDSCIFAIRNFTARKGMPLEFVSDRGT
FT                 NFVGASRELKEACALIDLERLMAEFVHPGTKWTFNPPAAPHFGGSWERLIQ
FT                 SVKKTLSSFNLPHHPTDELLRARLSEVELIVNSRPLTDVPVEDEADPPLTP
FT                 NHFILGSSNGSKPPIPFDDSIPSVRRSWKSAQQFADMFWKRWVNEYLPTLT
FT                 RRTKWFQPTKPLEEGDLVLIADGNNPRNCWPRGRIVKVCRTIDNQVRRVTV
FT                 QTLSGLLERPAVNIALLDVGTTKVGH"
XX
SQ   Sequence 5841 BP; 1638 A; 1357 C; 1533 G; 1312 T; 1 other;
     tttttttaaa aacgcgattg ttacgttatt acaacgcgta gttatattat tacaacgcgt        60
     agtttatcgc gattcataac tcgttacgtc gtgagtgtaa gtgaagtgaa gcttgcagaa       120
     tgtcccgtac accgatcccg aatcaaggag cgcctatttg cgaagggctg gagctgcttc       180
     ccccctccgt cagtagacca agcagcatcc gtggatccgg caggaacagc acagatccgt       240
     tggccaattc aacgatcagg cctacggaag ctggacgggc atcatcgagg ccatcctcga       300
     gggcgtcatc tacgcgaaat gagacactga acgagttagt aaggagagct cgcgaagcca       360
     agcgcgagct acaagcgatc gagcgtgaaa tagcggaagt tgtggtggat acaacttcgt       420
     cgattgctga aaaggaagac gaaattgatc agtggctacg tgatacggac cgtataggtg       480
     aaactgatca aaggcaacca gtggttcgtg cccaagccac cgccaaaagg ccggtacaac       540
     cgcagagtag tttcctcccg ccttacatta tcgatgtgcc gccaaggaat acgtccgtaa       600
     ggaaccccgc agcacgatct acggcgatcg aggaggaaat ggagaggata gacaagcagt       660
     gcgaacaaca gctgcttgaa gagagattgc tcgcaattga acgatgtgag caacgccgta       720
     tggccgaaaa gaaacggctg ctggaagaat ctatgcgtcc gactacaagc agtccaaagc       780
     cgcgtgttga accatataga ccggccgtta gttttgtgcc tgttaagccg gcagaaacta       840
     cwcaacaatc ggcatataac catacgacta gttttccgac gtttagtcag tgccagatct       900
     cggcgagaaa gtgcacgagc aaagagcttc cagcattcag tggcaacccg aaggagtgga       960
     tggctttcat atcgtattac gagcactcca ctgcgatatg cggctatacc aacggagaga      1020
     acatgctgcg gctacaagcg tgtttgaaag ggaaggcgcg tgaagcagtt gccagctgtt      1080
     tgttgtatcc tgacagcgtt ccggaggcca tcgagatcct gaaggagtgc tatggacgtc      1140
     ccgaactagt ggtgaacacg ctgatggcca acataagacg cacgccgcct ataaaggacg      1200
     acagcttcga cacgttggtg gattatggtg tggctgtgcg gaatttctgc gcatctatta      1260
     cgggttccgg actgcacaac tactttgatg gaggaccgct gttagaggag ctcgtggaca      1320
     agctgccgcc gtacgtgagg ctgaactggt attactacca aaacggtcat acgcacgtca      1380
     ctttggcgac attcaacgaa tggacgaagg agctagtgcg cgctgccagc agaggggtca      1440
     agcatactag cggtcgtaag gatgtaaaaa ctgacactag ccatcgtcag cacgaccgta      1500
     agtacgctca ccaaaacgtt cattccacag gtccagtaat aaaaccagca gccaaaccaa      1560
     cagtggctga gggtgatact aagcgttgcg atggatgtca ggagagtggc catgaattgt      1620
     ccgattgcag taaactccag agcatgagtg tcagttctcg ttggacactc attaagcgtg      1680
     aaggtatttg caggacgtgt cttcgcaaac atcaaggttc ttgcacggtt gacgcgttat      1740
     gtggagtaag tggatgcgaa cgtcggcatc atcgattgct gcactcagcg aacagcaacc      1800
     agttccatcc tggcacccga caggaagcag gtcgggttaa tactaactgc aacgtgcacg      1860
     ctgctgcatc cggaggtgtg atgctgaagt atgttccggt tacgcttcac ggtaatggta      1920
     cgaaggttga caccatcgca cttctcgacg acggatcctc ggccactttc atggagcatg      1980
     atctgctcag agagctgggg attagtggca aacctcgccc tttgtgtata tcgtggaccg      2040
     ggaaccagac cagagtcgag gacgagtcag tggaattatc cgtgaagata tccggcaccg      2100
     gggcatccaa tgtgtacgac atgcctgcgg tacatactgt tcgtactctc gggctgagta      2160
     agcagtcatt gattccggcg cagttagcag ccaaatataa gcatctgatg ggactgccgt      2220
     taccgtcatt taaaaatgct tcagcaagag tgctcattgg tgtcgacaac tatttcctgt      2280
     cccaaacgtt aaaaaccgtc gagagagggg cagatgagcc agcagcatcg aagacccgac      2340
     ttggttgggt ggtatatgga ccatgcaaaa cttcgacaaa cacggcagat accatgaaag      2400
     acatgaacgt gcatatttgt ccctgcaata aagaaaggga tgatgaaatg gatcgagcgt      2460
     taaggagata cttctctttt gagtcgttgg gagtgtatca tcctgctaag tccttacgct      2520
     ccgatgatga agaacgcgcg cttaatattc ttacttccac cgtgcggcta ctagatagac      2580
     gctatgaagc aggtctcctg tggaaatttg aatctaccaa gctgccagat agccgtgcaa      2640
     tggcgttgaa gcgtcatgac tgcttggaac gaaagttacg ccgcgaccca gtgctagctc      2700
     aagcaatgca cacaaaaatc caggagtacg aacagagcgg gtatataaga aaactctccc      2760
     agactgagca aagcatcaaa gagccacatg attggtattt acccatcttt cccgtcatca      2820
     atccgaacaa gccgggaaaa gttcgaattg tgtttgatgc tgcggctaaa gtaaatggaa      2880
     tcagtctaaa ctctgttcta cttacaggac cggaccagct cgtaggacta ctgactgtcc      2940
     tttataaatt ccgcgagtat aaggttgcag tgaccgggga catacgcgaa atgttttttc      3000
     aagttcgcat gaacaagcgc gaccaacgta gccaaatgtt tttctggaac gacgggaaaa      3060
     ttggcagcac accacaagca tatgtactat gtgtgatgac atttggagcc gcatgttcgc      3120
     ccagcactgc ccattatgta aaaaatacca atgctgatcg gtttcttgac ggatatccac      3180
     gggcagtcga gtgcattaaa tatgagcact atgtggatga catgctcgcc agcatagaaa      3240
     ccgaggaaga agccattaaa ttagcacgtg atgtccgttt cgttcactca cagggcggat      3300
     ttgaaatccg taattggcta tccaattcag caagagtgaa gaccacgatg aacggcactg      3360
     attcggaaag caacaacgta cccatcgaaa tggaaatggc cacagaaaag gtgcttggca      3420
     tgtggtggaa cacggagacg gatgtgttca cctttaaaat ctccaaacga tacgatccgc      3480
     aactgatatt cgacggtaga gcacctacaa agagagagat attacgcctt ttaatgtcga      3540
     tttatgatcc catgggttta atcggtcacc tgttaatgta cctgaaaatc ctacttcaag      3600
     aggtctggcg tactaagatc atgtgggacg aagaaatcgt tggtatcttg cttgagaagt      3660
     ggcacgtgtg gttatccgtt ctacccagca tacaagaagt gagcattccc agatgttacc      3720
     gacaaaccac gacggccaaa ggcacgacag tagaactaca cgtcttttgt gatgcgagcg      3780
     aaaacggaat ggctgctgtc gcctatttta ggtttgaagg aagtgggttg atagagtgtg      3840
     cattggtggg ctcgaagaca aaggtcgctc cgttgacgtt tacgtccata ccacggttgg      3900
     agctacaggc tgcagtacta ggggcacgct tagcaaacac gataaaaact tcacatcgtc      3960
     tacatatcac acgtgaagtc ttttggactg attcgaagac ggtcatgtgc tggatcaatt      4020
     cggaccatcg cagatacagt cagtttgtcg ccgtacgtat aagcgagatt gtagaaacga      4080
     caaatgcagc taactggaat tggatatcca ccaagaccaa tgtagccgac gagggcacta      4140
     agtggcaaaa actacccgac cttaatccag gcagcagatg gttccgcgga cccgatttcc      4200
     tctggaaacc aaccaacctg tggccgaata ctacgatgga atcgagtgag acggatgaag      4260
     aagtgcgcca ccagttactt catcacacac tagactcacc gctgatagat ttcactcgat      4320
     tttctaagtg gaagagactg cagaggacag ttgcgtacgt ttaccgtttt atgcgtaact      4380
     gtcaagcaag aacatcgaag ggggccaagc aaactggagc gttggcgcaa gaagaattgg      4440
     agtttgcgga atatgcaata taccgacaaa ttcaaaacga agaatatgcg gatgatcttc      4500
     ggcgactaag cgatggtgag ctacaaaggc atccgtggaa gcagccaatt aaaaaatcga      4560
     gcacgttata taaactgagt ccgttagtcg acaagcacgg aatccttcgt atgaagggaa      4620
     ggatcgacaa atgcgtgtgg gttggcgatg atacaaaaag accgattata attccaaatc      4680
     gtcactatgt aaccggcctg ttgatcagct ggtttcacga aaactatcgg catgcaaacc      4740
     atcaaacggc gattaatgaa attcggttaa agtaccatat cccacaactg aaagccacct      4800
     atagccgagt gtgccgtaat tgtcaacact gcaaggtgca tcgtgctatt ccacagaatc      4860
     ctgcgatggg aaatctacca tatcagcgat tggccgcatt tcaacaccct ttctcctaca      4920
     ccggaatcga ctatttcgga ccgatgatcg tcgcagtggg ccgaaggact gaaaaacggt      4980
     ggggagtcat ttttacttgc ctcactacca gaggcattca catcgaggtt gcgaacagcc      5040
     tttccaccga ttcttgcatt ttcgcaatcc gcaattttac ggccaggaag ggtatgccgc      5100
     tagaatttgt tagtgatcga ggcactaact ttgtcggcgc atcgcgcgag cttaaggaag      5160
     cgtgtgcgct aatcgatttg gagcggttga tggctgagtt tgtgcaccct gggacgaaat      5220
     ggacgttcaa cccaccagca gcaccccact ttggcgggtc atgggagcga ctgatccaat      5280
     cagtgaagaa aacgctttcg tccttcaatc taccccatca ccccacagat gagctgctcc      5340
     gggctaggtt gagtgaagtc gagctgatag tgaattcgcg gccactgacg gatgttccgg      5400
     ttgaggacga ggccgatcca ccactaacgc ctaatcactt tattttagga agttcaaacg      5460
     gaagcaagcc accgataccg ttcgatgatt ccatcccatc tgtacgtagg tcctggaagt      5520
     cagcacagca gtttgcagat atgttttgga aacgatgggt gaacgagtac ctaccgacgt      5580
     tgacgagacg aacaaagtgg tttcagccga caaaaccgct ggaggagggc gacctggtgc      5640
     tgatcgcaga cgggaacaat cctagaaact gctggccaag gggacggatt gtcaaagtgt      5700
     gtcgtactat cgacaatcag gtgcgtcgcg tgacggtaca aacgttaagt ggtttattgg      5760
     agaggccagc ggtgaatatc gcactattgg acgtcggcac aacgaaggta ggccactaaa      5820
     gtggcatacc ggtggggaga a                                                5841
//
ID   BEL-42_AnFu-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-380
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 744-744 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 380 BP; 128 A; 70 C; 102 G; 80 T; 0 other;
     tgttacgatg taaccgtgcc gacgaaccgc atggtaacgg ttatagcaga acaatggtag        60
     ggaaatataa acaaacctga caggataggg taggatgtag gcaccttggc tgtcaaagtg       120
     acaaatagga atttcgaaca tgatcgaaag ggcaatgatc ggagcgaagc gagagcgcaa       180
     cggccatcgc gggaaaaaaa gggatataag gagcgtgcgt agggcaaacg gcctctgcgc       240
     attataaacc gtccaagtac cgcgttttta aaaaccccgc cacagagtaa aataaaagtg       300
     ttatacgaat tataacatat tgattgttgc gtcgttattt aaacggtaaa tcacgggcgt       360
     agagagttgc gtttgcaaca                                                   380
//
ID   BEL-42_CQ-I repbase;    DNA;    INV; 5696 BP.
XX
AC   AAWU01000931;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_CQ_;
KW   BEL-42_CQ-LTR; BEL-42_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5696
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 237-237 (2011).
XX
DR   GenBank; AAWU01000931; Positions   32094   26399.
XX
CC   Positions [4708-5316] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..5694
FT                 /product="BEL-42_CQ-I_1p"
FT                 /translation="MPKSSAKAPATSPGSAEFGNSATSSTPVVKKEKKKRK
FT                 LQDKIKMEIETLVHRRGLAKGKVTKILKAIRPTETAEVRQLSEPQVHVYMK
FT                 KLETAQKEYMSNHESILAMVDMEGRKQADKHYEEFDDLHDKVALMLEEQLL
FT                 GFNATRANGTLNATAPPQAPQPPVIVHQPLRMPIPSFDGRYESWPKFKVLF
FT                 KEVVDKAPDPPAVKLYHLEHALVGGAVGSIDAKTISEGNYAHAWEILEEKY
FT                 GNKRHAIDRHINGLLNLTKMNKENHVELRGLVDECTRHVESLKFLEQEFTG
FT                 ISELIVVHLLGAALDKDTRRRWESEVKKGELPQYDQMLEFLKAQCFVMERC
FT                 EDLKPKQPTVQPKPAVKSSQKSYAVSTSESETRSEDRCDICGKGHKNHACP
FT                 DFKALPLQQRMVKVREHNLCFNCLKKGHSSKKCTSPGTCSKCKRRHHSLLH
FT                 SEERPKSEQKVTQAPPEQAPEVKQQEAAQLTTASCHNETPTQEVLLLTAVV
FT                 DIMDRNNKAHPCRVLLDSASQANLISRAMVEALGLKQFPSNVTVAGIDGTK
FT                 THASSGSVVQLRSRYSSFSANIKCLVTERVTADLPTSAVNVRSWELPPGIQ
FT                 LADPSFHQPGKVDLLLGNQLFLKLLMPGEVHLAEHLPMLRETQFGWVVGGV
FT                 CDEEDEAAAVVHSHSATLEDLNRTVQRFWELEEYESDVKVSSEESECELHF
FT                 TETHRRDATGRYVVELPLKESVAELGDSRTMALRRFYALERKLAQQPELKK
FT                 QYVEFMEEYEKLGHCKEIQEGEDPVGLKKWYLPHHAVLRPSNTTTKCRVVF
FT                 DASAKVNGLSLNDVMKVGDLNQSSLVSIVLRFRFPRYVLTTDVAKMYRQVL
FT                 VDERHTPLQRVFWRTDPTKPLRVLELTTVTYGTASAPFLATRALQQLARDE
FT                 KHRFPLAAKIIEEDFYVDNALFGFDDVSQASEAQSQLIQLCKAGGFELHKW
FT                 SSNCPELLEAIPEADREELVSVGGTGTKEVIKALGLLWNPAADELQFAPLP
FT                 SERDGRPTKSQVLSCVASIFDPAGIAAPVVLVGKLLMKGIWEKEIGWNQQI
FT                 PEELVKEWEHFLDAVRDLDKIRVPRRVVATNAAANELHGYADASKHAYGAC
FT                 VYVKSIIPGSPAELNLLCAKSKLVPKTLKTIPRSELLAARLLHRLVKNVLE
FT                 AVDFVFRKIGLWSDSQVVLAWLKKKPDQLEVFVKNRVAEIVATGGIFEWKY
FT                 VRTADNPADIVSRGMSATKLATNEKWKKCAEYQRSEICEMEEPEPLPDDAV
FT                 PELRRAVVVSAAIQYETFQSTFERIESFRELQRIFAYVVRFCRNCKEKVKE
FT                 RRIVSRYPTIPEMRESQKAILRAVQHLEFAAEIASLEKGESFKKLNCLNPF
FT                 LDDGLVRVGGRLRHSRLPYATKHQWILPQHNKVVQNLIRCIHKENLHAGPL
FT                 ALLAAVRRQFWIPNARSVVRKITRSCVQCFKVSPTTAKQFMGDLPTSRCDR
FT                 ALAFQKVGLDFAGPFLIKQAGRKAAPVKGYVCVFVCMVTKGIHLEAVESLS
FT                 TEAFIAALLRFVSRRGLPEELFSDNGTNFVGAKHELHDLYKLLQDQLTERK
FT                 IFEFCQPREIQWSMIPPGAPHMGGIWEAGVKSTKTILKKVCNTALLTMTEF
FT                 ATLLCQIEAQLNSRPLYAQSEDPSDPEPLTPGHFLIDRPLTAIPEPTYEEI
FT                 PTNRLSRWQYVQVLRDNFWKRWSREYLVELQARGKWTRKMVNVRKGMVVMI
FT                 KEDNLPPQSWRLGVVTDTYPGPDKMVRVVDLRTRSGILKRPIHKLAPLPIL
FT                 DNAETTAASGGE"
XX
SQ   Sequence 5696 BP; 1436 A; 1489 C; 1684 G; 1087 T; 0 other;
     tggtccaaac gagccggatc tggtgaaccg ggagtgcaca gtgaaggaca aaaggcggag        60
     ggtcgtttgt atcgcggcaa gtggacaagt tcgcgaaaag tgcgaaaaaa gtgaacgccg       120
     cgaccaagtg aaaaagccgc catcttggcg aaaaaagaag cgacgccatc ttgcgtccag       180
     aacgttcttg agaggaaaaa agttccagaa gaagaacaag tggaaggaag atagtgaagt       240
     gtcggccaag aggacgccat tgtttccccc tagcaccgtg atttccaact tggtggattt       300
     ccgtgttagg ttcgggcaaa aggctcgatt ggtggtgtcc ctcgaatgcc gaaaagttcc       360
     gcgaaagctc ctgcaacatc acctggaagc gctgagttcg gaaactcggc cacatcgtcg       420
     actcctgtag tgaagaagga gaagaagaag cggaagttgc aggacaagat caagatggag       480
     atcgagacgc tcgtccaccg ccgaggcctg gccaaaggta aggtgacgaa gatactcaaa       540
     gctattcgac ccacggagac tgcggaagtt cgccagctaa gcgagccgca agttcatgtc       600
     tacatgaaaa agttggaaac cgctcagaag gagtacatgt ccaaccacga atccatcctg       660
     gccatggtcg acatggaggg tcgtaagcag gctgacaagc attacgaaga atttgacgac       720
     ctccatgaca aagtggccct catgctcgaa gagcagttgc tcgggttcaa tgccacaagg       780
     gcaaacggaa ccttgaacgc aactgcaccc ccacaagccc ctcaaccccc tgtcattgtt       840
     caccagccct tgagaatgcc aatcccctca ttcgacggcc gctacgagag ttggccgaag       900
     ttcaaggtcc tgttcaagga agtggtcgac aaggcgcccg atccgccagc agtgaagctc       960
     taccatctgg aacacgcgct ggtggggggt gcagttgggt cgatcgacgc gaagaccatc      1020
     agcgagggca actacgccca tgcctgggaa attctggagg aaaagtacgg caacaagcgt      1080
     catgcgatcg acagacacat caacgggctg ctaaacctga cgaagatgaa caaggagaac      1140
     cacgtcgagt tgagaggcct ggtggacgag tgcacaaggc acgtagagag tctgaagttc      1200
     ctggaacagg agttcacggg aatatcagag ctgattgtgg tccatctgct cggcgcagcg      1260
     ctggacaagg acactcgaag acgctgggag tcggaggtca agaaaggaga actaccccag      1320
     tacgatcaga tgctggagtt cctgaaggcc cagtgcttcg tcatggagcg ttgcgaggac      1380
     ctgaaaccaa agcagccaac ggtccagccc aagccggccg tcaagtccag ccagaagtcg      1440
     tacgccgtgt ccacgtccga gtccgagacc aggtcggaag acaggtgcga catctgtggc      1500
     aagggccaca agaaccacgc ctgcccggat ttcaaggcac ttccgttgca gcagagaatg      1560
     gtcaaggttc gggagcacaa cctgtgcttc aactgtctaa agaagggaca ctccagcaag      1620
     aagtgcactt caccgggaac ctgctcgaag tgcaaacgac gtcaccacag tctgctccac      1680
     tccgaagaac gccccaagtc ggaacagaag gtgacacaag caccgccgga acaagccccg      1740
     gaggtcaagc agcaagaagc agctcagctg acaaccgcga gttgccacaa cgagacgcca      1800
     acccaagagg tgctgcttct cacggcagtg gtggacataa tggatcgaaa caacaaggcc      1860
     cacccctgca gagttttatt ggacagtgcg tcacaagcta acctcatctc gagggccatg      1920
     gtggaggcgc tgggcttgaa gcagtttccg tccaacgtca ccgtggcagg aatcgacggc      1980
     acgaaaaccc acgcttcatc gggcagcgta gtccaacttc gttcgaggta ctccagcttc      2040
     agcgcgaaca tcaagtgttt ggtcacggag agggtcacgg ccgaccttcc cacgtccgca      2100
     gtgaacgtgc gcagctggga gctgccacct ggaatacaac ttgcggaccc gtctttccac      2160
     cagcctggga aggtggatct gctactgggc aatcaattgt tcttgaagtt gctgatgccc      2220
     ggagaagtgc atttggcgga acacctgcca atgctacgcg aaactcagtt cggctgggtc      2280
     gttggtggcg tgtgcgatga agaagacgaa gctgcagcag tggttcactc gcactcagcc      2340
     acactggaag acttgaaccg caccgttcaa cgtttttggg agctggaaga atacgaaagt      2400
     gatgtgaaag tgtcaagtga agaaagtgaa tgtgagctgc acttcacgga aacacaccgt      2460
     cgggatgcaa ctgggaggta cgtggtggag cttccgctca aagagtcggt cgccgagctc      2520
     ggcgattcac gtacgatggc gctgcgaaga ttctacgctc tggagagaaa gcttgcacaa      2580
     cagccggagt tgaagaagca gtacgtcgaa ttcatggaag agtacgagaa gcttggacac      2640
     tgcaaggaga tacaagaagg tgaagaccca gttggactca agaagtggta cctgcctcac      2700
     cacgccgttc ttcgcccgtc gaatactacc accaagtgcc gcgtggtgtt cgacgcatcc      2760
     gccaaagtga acggcctctc tctcaacgat gtgatgaagg taggtgacct aaaccaaagc      2820
     tcccttgtct cgatcgttct tcgctttcgc ttcccccgct acgtgctgac cacagacgtg      2880
     gccaagatgt atcggcaagt ccttgtcgat gaaagacaca cgccgctgca gcgcgtgttt      2940
     tggagaaccg atccaacgaa accgcttagg gtgctagagt tgacgacggt cacctacggc      3000
     actgcatccg caccatttct ggccacacga gcgctccagc agctggccag agacgagaag      3060
     catcgattcc cactagcagc caagatcatc gaggaagact tctacgtcga caacgcgctg      3120
     ttcggtttcg acgacgtttc acaagcttcc gaagcgcaat cgcagctgat ccaactgtgc      3180
     aaggcaggtg gatttgagtt gcataagtgg tcgtcaaact gtccggaact cttggaggcc      3240
     attccggaag ccgatcggga ggagcttgtc agcgttggtg gaactggaac caaggaggtg      3300
     atcaaggctc taggtctgct gtggaacccc gcggcggacg aactacaatt tgcgccgctg      3360
     ccttccgagc gagacgggcg gccaacgaaa tcgcaagtgc tctcgtgtgt cgcgagcatc      3420
     ttcgacccgg ccggaatcgc tgcgccagtg gttctcgtcg gcaagttatt gatgaagggt      3480
     atctgggaaa aggagattgg atggaatcag cagatacctg aagagctagt gaaggagtgg      3540
     gagcacttcc tggatgcggt ccgggacctc gacaagattc gagtgccgcg tagggtggta      3600
     gctacgaacg ccgctgctaa cgagctgcac gggtacgccg acgcgtcgaa gcacgcgtac      3660
     ggagcttgcg tgtacgtgaa atcgatcatc ccagggagcc ccgcggaact gaacctgctg      3720
     tgtgccaagt cgaagttggt tccaaagacg ttgaaaacga tcccacgaag tgagctgctg      3780
     gccgcacgct tgctgcaccg gttggtcaag aacgttctgg aggcggtgga cttcgtcttc      3840
     aggaaaattg ggctgtggtc tgacagccag gtcgtgcttg cttggctaaa aaagaaacct      3900
     gatcaactgg aggtgtttgt gaaaaatcgg gttgctgaga ttgttgctac cggcggtatt      3960
     ttcgagtgga agtatgtgcg cactgcagac aaccctgcag atatcgtttc acgcggtatg      4020
     tctgccacca agctagcaac aaacgagaag tggaagaagt gcgcagagta ccagcgaagt      4080
     gagatctgcg aaatggagga accagagccg ctgccagatg acgccgttcc agagcttcgt      4140
     cgtgctgtgg tcgtaagcgc ggccatccag tacgaaacat ttcaatcaac gttcgagagg      4200
     atcgaatcgt ttcgagagct acagcgcatc ttcgcctacg tcgtgcggtt ctgccgcaac      4260
     tgtaaggaga aggtcaagga aaggcggatc gtgtcaaggt accctacgat cccagagatg      4320
     cgcgagtcgc agaaggcgat tttgcgagcg gtgcaacacc tggagttcgc cgccgaaata      4380
     gccagcctcg agaaaggtga gtccttcaaa aaactaaatt gtttgaaccc atttctggac      4440
     gatgggttgg tacgtgtggg cggtcgcctg cgccattcgc ggctgccgta cgcaaccaag      4500
     caccagtgga tactgccgca gcacaacaag gtggtgcaga acctgatcag atgcattcac      4560
     aaggagaact tgcatgctgg cccgctggca ttgctggcgg cagttcgccg gcaattctgg      4620
     atacccaacg ctcgttcggt ggtacgcaag atcacacgga gctgcgtgca gtgtttcaag      4680
     gtcagtccca cgacagccaa gcagtttatg ggagaccttc caacgagtcg ctgcgacaga      4740
     gctctagcgt ttcagaaggt tggcctggat ttcgcgggcc cgttcctcat caagcaagct      4800
     ggacggaagg cggccccggt caagggttac gtgtgcgtgt tcgtgtgcat ggtaacgaaa      4860
     ggaatccacc tggaggcggt cgagagcctg tcgactgaag cattcatcgc tgcgctgcta      4920
     cggttcgtgt cccgccgtgg tctacccgaa gagctgtttt ctgataacgg gacgaacttc      4980
     gtcggcgcca agcacgagtt acacgacctg tacaagctgt tgcaggatca gctgacggag      5040
     agaaagattt ttgagttttg ccagccgcgc gagattcaat ggagtatgat cccccctggc      5100
     gcaccgcaca tgggtggaat ttgggaagca ggagtcaaga gcaccaagac gatcctgaag      5160
     aaggtatgca acactgcgtt actcacgatg acggaatttg ctacgctgct ctgccagatt      5220
     gaggcgcaac tcaattcgcg gcctctgtac gcgcagtccg aggacccatc ggaccccgaa      5280
     ccgctaacgc cgggacattt tttgattgac cgtccgctga cggcaatacc agagccaacc      5340
     tacgaggaga ttcctacgaa tcgcctgtcc cgctggcagt acgtccaggt gctccgtgac      5400
     aacttttgga agcgctggtc acgggagtat ctggtggaac ttcaagctcg gggaaaatgg      5460
     accaggaaga tggtcaatgt gcgcaagggt atggttgtca tgatcaagga ggacaacttg      5520
     ccaccccaat cgtggagact cggagtggtt accgacactt acccgggtcc ggacaagatg      5580
     gttcgagtcg tcgacttgcg aacacgttcc ggaatattga agcggccgat ccacaagctg      5640
     gcaccgctgc cgattctgga caacgccgag actacagccg cttccggtgg ggagga          5696
//
ID   BEL-42_CQ-LTR repbase;    DNA;    INV; 468 BP.
XX
AC   AAWU01000931;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_CQ_;
KW   BEL-42_CQ-I; BEL-42_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-468
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 238-238 (2011).
XX
DR   GenBank; AAWU01000931; Positions   26398   25931.
XX
SQ   Sequence 468 BP; 127 A; 111 C; 133 G; 97 T; 0 other;
     tgttcgggcc gaaagctgtc agcccgaaga aaattttaca actgagcagt gtccaatccc        60
     acggctactg cgatcgacga caaagctggc aaccgcgcgc cgttgacgac ggtgcgagaa       120
     cgagagagaa ggagagaacg acgcaacgaa cgcactcgcg tgtggagagt tttttggcgc       180
     gcaacgaacg agttagcgcg atcgtgcgag aagctgagac aagttcgccg caagcagccg       240
     aagtgatcga acggaagtcg ccgccgcgga tcgcgagttt tctcggaaga aaatctttag       300
     ttttaaaatt agttgctaaa tagatgtagt caagagaaac tcgagtgttt tagtggcttg       360
     cttgcgataa tccgatcctc ccagtgaaat tcccggttcc cccagtccgc cggaagaagt       420
     gttgtgtttg ctcgagaaat tacagtccgc tcgaatcgaa actggaca                    468
//
ID   BEL-42_DTa-I repbase;    DNA;    INV; 7549 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7549
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5649-5649 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 7549 BP; 2843 A; 1149 C; 1553 G; 2000 T; 4 other;
     ttttggtcct tcgaggagct ttaaaagtca tcccccacca gtggtaagag actaaagagt        60
     tataaaccag caccttaaaa aatctaaggt tgcgaaataa aaactcttgt taccccccac       120
     ccgtggtaag gaacagagaa taataaataa taaaaataaa acataaatat tcagaagaat       180
     ttttattgtt ttaatttaaa aacacctttg ttaggcttaa aatatagcca aaggttgttc       240
     tcaaaaatac ccctttaaaa aaaaagtgcg gtaaggcgtg cttgaggcct aaacatcagc       300
     aatacggtca tcggtatata gtacggtaaa caaagtgcta atcgacaaaa tccggtagta       360
     tcgacgcaaa aaaataaaat tttcgtgcgg tatataaaaa atataaaaat ttacggcgct       420
     acgtcagcgc ctacagtggc agcagcatct gcagcagtat ctacagctgc atctacagca       480
     gcatcaaatt ccgtagcaga gactacatca gcggcggcga gtacatcagc ggcgactaca       540
     gcagcggaga atactacagc ggcagctaca acgacagcat cgcctaagaa cagcagcagc       600
     gacggacaac agataagata tttaagataa tttttttcta tatttaatat atttaaaaaa       660
     aaaatggtgt ccgagcaata ttgtaacgtg ctcaaaaggc aggccgagat aaataagaaa       720
     tgcaaagaaa taagcgagaa tggtggacga aattttactg ccgaagaatt acagtttata       780
     aacgaactag agagtgaatt tcggtccaac catgcagctt taattaagtc aggcactata       840
     gatcatgagt attttactag aaagaggtat gaccaagttt tagggacaat cagtcaacta       900
     aaatttgaat acgaacagtt aaaaataaaa caatctagtg aggaaaaaga agataaagag       960
     gctgagttaa aaaaaagaat taatgaactt aaaacctact tggatgacac ctatatagaa      1020
     atgcgggacg gtaagcggag tatgttacat ttaagaaaga acaagttaca ttttctttgg      1080
     caatctatac aatcgaacat aaaattagaa gctggtagtt gtagttttga ccgaaagtta      1140
     actcttagcg aattagagtt tgacgttcag agtatttctg ctgaaataaa tgagcagata      1200
     aaacaagatt ctgttaaaat ggaggctgtg agtaaaattg agtacttacc aagtctacct      1260
     aaaattgagg tacccacatt tagcggagat gctaaagact gggacctttt tcatgaattg      1320
     tatgtggaat tgatacatac aagggaaggt ctaaataact ctcaaaattc aattatttga      1380
     agtccgccct aaaaggtgaa gctcgaaagg ttgtcgctca tctattatta ggttccgcgg      1440
     ataactatga tgccgcttgg gagattctga ccaagcggta cgaaaatcat agaaaaattt      1500
     tctcggagca gtttaatcgc ttgatggact tgacgatttt aaatatcgat tctgtcaagc      1560
     agattaagca ttttattgat accgcaaatg aagcaataca catcgtaaag ctgaaggcca      1620
     atctgaccga cgaagttgat gtgttatttg ctcatatggt gctcaggaaa tttaatacgc      1680
     agactcttca attatatgaa agtcatgtta agaaaaccaa agacatacag aaactatctg      1740
     atgttatgga ttttttggag cagcgattat gtgcgacttg ctcttttcag gaagaaaaac      1800
     ctattaagaa aatgtcaaat gtggcaaata gtttcaattt taaacaattt agttattcga      1860
     attggggaga aaaatgtccg atctgcaaaa tgatggggca tttcgcgact caatgccaca      1920
     gatttagagg gatgaatccc acagagcgaa tggaaatcgc taaaaaagtg caattatgca      1980
     caagatgcct aaaacattca tctaatcaaa aatgctcaag cgaatactta tgttccttgt      2040
     gcaataaatt gcatcatacg atgcttcata taaatattca aaaacgggaa aaagtcaaca      2100
     cttgtgtgac tgccactcag gcattacttg caacagcaag aattcaagtg aaatctgcca      2160
     acggctattt tgaaaattta agagctctta ttgatagtgg atggctggat ggatagtgga      2220
     ggcagcacaa atactaaaac tgccaaaaat taaaactaag acggaaatta gtgggatatc      2280
     ttctacggat acttgtgtat ccaaatataa aattaaaata acgataaaac ctcctaactc      2340
     gaagaagtcg ttagtgactg aggcaataat attgcccaaa ttgatgaaag ctttaccgat      2400
     tacagaagtt aatatagata agactaaatg gcaaaattat tcattagctg acccggactt      2460
     taataagcca ggccgagttg atgtaatcat tggagccgat ctatatacac aaattttaaa      2520
     gaagggtata gcaaaaatta atggtctgtt aggccagaat acgaatttcg gttggatcat      2580
     ttctggatgc actaagtcaa agggtactca ttcgatagtg gcgactacta tcgaagtgca      2640
     agacctagaa cgkttttggg aactagaaaa tgaagacaaa aatgatgtag agaccgaagt      2700
     ttgtgaaaac aattttatga aaactacctc tatttcaaat gggtaggtat attgttcgaa      2760
     ttccatttaa ggacgacaca tccttagggg aatcaaagcc gcaagcaatg gctcgattga      2820
     taaacatgga gaagaatttt tcgcgaaatg aaaaacttcg agatgcctat aaattgttta      2880
     tgaaagaata tattgatctt gggcatatgg ttgagtcgaa gagggaagga aaatactact      2940
     taccccatca agccgtactt agagattcca gtttaactac aaagttaaga gtagtgtttg      3000
     atgcctcggc aaaaacgact aacaacaaaa gcttaaatga tatcatgtgg gttgggccta      3060
     gagtccagaa agaaatcttt gatataatgt tgaattggcg taaatgggaa tacgtcatat      3120
     cagcggacat agaaaaaatg tacagacaaa tattcattga tgaaaaagat caagaatacc      3180
     aatatatatt atggagagac tctcctcaag acaaaataaa atcgtacaaa ttgaaaacag      3240
     taacctatgg gactgcctca gctccatatt tagctactag agttctagta gatatagcag      3300
     ataattgtaa gaatgatgaa attggaagag taattagaaa tgacttctac atggatgatc      3360
     tcatgacagg agcaaattca gtggaaagtg ccataaacat tgtagagcaa gtttctagcg      3420
     aatttaaaaa agttaatatg aatttacgga agtggatttc gaataataaa gaaataataa      3480
     aagtagtaga agatactggc gacaacaagg taataagtat caaagaaatg ttcgcgaaaa      3540
     cattggaact tcaatgggaa ccccaaaagg atgagtttaa gttcaacgtt aatttggaaa      3600
     atgctaaaaa agaaaataaa cgaacagtac ttttcacttt atcgaaaatt tatgatccgt      3660
     taggatggtt agctccagta accatcacag gaaagctgtt tgtgcagaaa ctttggctgg      3720
     ctgaaaatag ctgggatcaa gagttatcaa aagacaatgc ccaggaatgg gcgagatata      3780
     aagaaaaact tttactgttg gaaaaaatca gaatacctag atggatccaa agtaaattaa      3840
     attcgattgt tgagctgcat gggtttgcag acgcgtctga aaaagcatat gcggcagtag      3900
     tatatgctaa agtaggaaga ttagttacaa tagtagctag ttaaagcagg gtaaatccaa      3960
     tcaaaaataa gaaaacaatt ccgaaactag aactatgcgc agctcatctg ttgagtaaac      4020
     taatacaaaa aatcaaagaa tcgattgata atgcagccaa gatatacgcg tggagtgatt      4080
     ctactataac gttagcttgg attaaaagtg gtcaaagcaa agtcaaattt attaaacata      4140
     ggacagatta tattcgtaga tatacagaag tagagtggaa tcacgttaaa tcagaacata      4200
     atccagcgga cgtagcgtca aggggaattt cgtcaagtga actaataaat tttgctacat      4260
     agttcgattt ataaatatga aaacaaagaa aatatcttgt ccgggctatt tatcggttag      4320
     ggaaataaga tatgcggaac aaataattat aaaaaaggag caggcatatc aatttggttc      4380
     agagctaaac agtttaaaca ataataaaga agtcaaaatt tcttcaaaaa ttctgagttt      4440
     acatccattt atggatcagg ataaaattat cagagtaggc ggtagattac aaaattacaa      4500
     tgctagattc gagataaaac atccaattat tctcgacaaa gggcatattt cttcattaat      4560
     tatagaggat gctcataacc gaaccttaca tggtggaata aatttgatga gaacatacat      4620
     ttaaagaaaa tattggatat ttggattgag aaattcatta aagaaaaaat taaatgagtg      4680
     tacgaaatgt gcaagatatc gacaggtcac ggcacaacaa gtaatgggaa atctacccaa      4740
     atatggtatt gattacgcag gaccctatta tataagatgt tctaagaata gaggtcagaa      4800
     aacatacaaa gggtatatag ctgtctttgt gtgtatggta acaaaagcaa tacatttaga      4860
     agtagtaagc gatttaactt ctgacgcgtt tctagctgcg ctcagaaggc ttatcgcaag      4920
     aagagggaag tgtgcggcta tttattccga taatggaaca aattttgtag gcgcagcaag      4980
     aaaattagac gaagagttgg cgaaagcaat taaagaaaat tcagcggtgg caaatcaact      5040
     cggaaaagaa gggattgagt ggcattttat ccccccggca ggacctcact tcggaggtat      5100
     ctgggaggcc ggcgtaaaat caatgaaata tcacctaaaa cgggtgattg gtgacggaaa      5160
     cttgacatac gaasagatgt caacacttct atgccaaata gaaggagtgt tgaattcacg      5220
     acccctatat ttatcagata atgatataga ggaaaatgaa gtacttacac ctggacactt      5280
     tttgatagga cgaccaccgt tggatgtgat tgagcctata aatgaaaatg aaaaaatagg      5340
     gaacttggat aggtggaaat taatccaaaa aattaaaaaa gatttttgga tgaaatggaa      5400
     agatgactac ttgcataccc tacaacagag gtataaatgg aaaaggaata gccccaatat      5460
     agaaaaggga caggtagttc taataaagga tgaaaattgt catccatcaa gatggccgtt      5520
     agacgagaaa gttcgggtag taaaagtcaa gatgcaggac gcatgcattt cccgaccgat      5580
     taccaaggtt tgccctcttg taggaatcaa ggctgtcgaa gataatgaag aagaatctca      5640
     acccaaaagg ataactaggg gtggatctag gatatccaag ctgggaktaa taatgagtat      5700
     gctaatgtta atgttgtttt gtcaactgtc aaatgcatca ctcaccgttg aaaatacgcc      5760
     taagtataaa attgawaaaa taaataaaac gtcagccata tatttggatc caatgggcga      5820
     agtagaaatt gtctcgtcct cttggaattt ggttgttttc tataatatgg atgcttattt      5880
     tgaaatgata agcaaaggaa gcgttctagt gaacaagatg agacgggtgt gtgaaaaact      5940
     tcatagtttc gaagatcagt gtaaccttgt tctagacaat actttaaaac aactaactga      6000
     actagaagaa aataataaat tattcatggc gcatagtaag caaagaacaa aacgcgctcc      6060
     atttgagttc atggggtcct tatatcacat actgttcgga attatggacg aggatgatag      6120
     ggtacaaatg gagcaaaata tgaaaaactt gttagataac caacacagcc taaacgatct      6180
     aggcaaaaag caattgtcta tcgtggattc gacggctaat atccttaaaa agacaaatga      6240
     ggaagttaat aataacttta aatatatgaa tgagcgtata gagaatatga cggctgtact      6300
     acaagaaagt tattacgttt ataaggagtc tataaatttc tttatggtca caaagcagtt      6360
     gactagttta attgaagatt gtgaaaagac acaagcaggt ataattagtt tgttaattga      6420
     tataaatcat ggacggctga acacgaatat tcttcaagcg agccaactga aaagcgagat      6480
     atcaaaaatc aaggaaagtc tatctgagac actagtatta ccaggtaaaa gaactggaac      6540
     agagttaaaa gaggtatata cgctgttaac agctaggggc ttgtttgtag acaaaaaatt      6600
     gataataaat gctaagatac cattatttag cagacaccca tcgaaattat ataaagtaat      6660
     accagtgcca gtttggtcag aggagagttt gctgatagcc aacttaaaat cagagtattt      6720
     ggtgtacaat tttgaggttg attcatacca tttaatgacg gaaaccactc tgaacaagtg      6780
     tcaaaagtgg caggctgaaa gaagagtttg tgaaggaaat tggccatgga gtaatgccaa      6840
     tgatttggca tgtgaattga gaccgctaaa accaggcaga ctagctaatt gcgtatacaa      6900
     gcgcatgtta gattctagtt catattgggt tgaattagag gcaaaaagca cttggctatt      6960
     taaagtgcgc tttaacgtta aagtaagaat acaatgtcaa aatacaaaga tggatgtagt      7020
     taatttgcca gaagaaggaa ttttatcact aaggtcggat tgcacagctc gcactgacga      7080
     taaaatatta gtagcgcaat ataatataaa gtctgagagg caagagacat tatcatcagc      7140
     ttatataggt gacattacgg acgttccgaa aatcgtttag agttcatttg aaaatcacac      7200
     tagaaaccat agtgccgaga ttgatagact gacaaaggaa ttagcacatt tgaaaggaat      7260
     tcatatagaa ctaaaggggt taaatgtaca tcatatatct ggtcatacct ctttgatttt      7320
     aagtatcgta atcattataa ttataataat atttgccata caaaaatgta acttaagcag      7380
     gaaactgcaa gctttaacgt ttggaggccg tttgcaagat ggttaaaata ttaaacaatg      7440
     tattaacgct gtaaaaaata tataaaaaat gttagcatat tatcaaattg tatagattat      7500
     aagtcaaatt tgaaaacgtc acaccgaatc ttgctggacc ttggcagaa                  7549
//
ID   BEL-42_DTa-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-42_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-307
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5665-5665 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 307 BP; 109 A; 50 C; 60 G; 88 T; 0 other;
     tgttcaaaca tgaccacgtt ttatagatat acttgtattc gtgtagaccg tattttacaa        60
     tgaggtcata aactgtaacc caaatatggg atgtcccaag aagggtcgaa tatcctaggc       120
     acataagcga taacagatgt gcactataaa aacccaaaga taagcaggta tgtctgcgtg       180
     ggtcattaga taagagtaaa ataagattct catgttagct acgtaagagt tgaatattaa       240
     taaagaaatc agtttgaaat agtaactcaa caaatgaagt cgtccttatt tcgggtcgct       300
     ctattca                                                                 307
//
ID   BEL-43_AA-I repbase;    DNA;    INV; 6115 BP.
XX
AC   AAGE02017492;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_AA_;
KW   BEL-43_AA-LTR; BEL-43_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017492; Positions   28301   34415.
XX
CC   Positions [5137-5724] - Integrase core
CC   'CCAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1608
FT                 /product="BEL-43_AA-I_1p"
FT                 /translation="MALTAHTPKGKKKGKNMADDANIGNENEDDSSRTLTI
FT                 SEQLIQQKFKEVTRQKKEEFDVLLKKKETVARKLTRIQVALQRPEAADKHY
FT                 LQLQVKMLESAYGEYSELQNHIYDLNTSEEVRCAEEMRFIEFEELYSVLYV
FT                 QLTKQIDAVVKNETEPALLQPVHNQPHIPPLKAPLPTFDGNFENWFAFKNM
FT                 FQNVMARYENEAPAIKLYHLRNSLIGAAAGVIDQDIINNNDYDAAWETLRE
FT                 RFEDKQVIVDKHIDAMFNIPAMTKESAVSLRKLIDTVSKNVDALKNLELPV
FT                 QGLGEMMLLNVLAKKLDLETRKAWGLNQKDNELADYQSTMEFIKERCKVYE
FT                 KISRSSKATVEVVKQVRSAGKTDSKVHSLVATNEKCTHCKGDHEIWKCELF
FT                 KKVNLSERYNSLRKSGSCFNCLERGHITGKCKSERSCKQCGKRHHTSLHPV
FT                 DTYPGDSTTTKCRLEERSIEAVDRGR"
FT   CDS           1961..3949
FT                 /product="BEL-43_AA-I_3p"
FT                 /translation="MQPFEIAQLNIPEDLQLADPGFNVPGQVDILIGSGLF
FT                 FKLIKHGQLQLADHLPAVQETSLGWIVSGLIPTSQMGVGGTLCTIVTQDDI
FT                 GKLLERFWHFDSYDEAAPVLERSLEDVCVAHFLETHRRDENGRFVVRLPFN
FT                 EAKEKLGDSETMARKRFFAVERRLDKDPDLKRQYVDFMSEYAELGHMVEVT
FT                 PSQNENPTDAFYLPHHCVLKPTSSTTKLRVVFDGSAESPTGVSVNQTQMVG
FT                 PTVQNDLVSIHLRFRTFPYAISADIPKMYRQVRMDDDFLRVFWRSNRDDPL
FT                 RVYALKTVTYGLASSPFLATMALRQLADEEEHRYPLAASTVKKSFYIDDML
FT                 AGANSLEEAVELLRQVTGLLHDGGFDIHKVCSNSKELLDMVPENKREKLGV
FT                 IDDAAINCLMKTLGIVWNPVCDVFTFRIAEVLPATQLTKRVILSEISRIFD
FT                 PLGFLGPVLTAAKLIMRELWLLDLHWGDALPQDLVELWMEFRDQLQSLNGL
FT                 EIPRCVLNRDCIGIELHGFADASDLAFGACLYARSVFRDGKAEMRLICSKS
FT                 RILPKKQGTKKEVTTPRAELQAALLLARLAVKLIGAMEIQFASVVLWSDSQ
FT                 IVLCWIKKSPDSLKIYVGNRVKEIQMLTNEFVWRYIPSKLNPADLISRGVQ
FT                 PNRLREQQVWWTGL"
FT   CDS           4588..6084
FT                 /product="BEL-43_AA-I_2p"
FT                 /translation="MFDNVSRFSIMQRAMAYVIRFTDYIRSGRQQLTKGLP
FT                 TVDEMKRALLLIIRLIQKECFSDEIRALEEEKEFKYPLKCLNPFIDEKDDT
FT                 LRVGGRIRHAQIPYGSKHQLLLPSRHPVTVAIIRYLHKANMHIGQRALLAV
FT                 VRQQFWPLRAKNVIRDVIHKCTPCYRAHPKRATQLMGDLPEYRVQAAYPFC
FT                 NVGIDFAGPFTMRAAVSTKKSLITKGYVCVFVCMATRAIHLEAASNLSTDA
FT                 FLASLQRFVSRRGLPTKIFSDNATNFVGANNELTKLADLFQTEMHQKKLNG
FT                 FCVQRNIEWSFIPPRSPHFGGIWEAGVKSAKFHLRPILADHKLSYEELTTV
FT                 LAQIEATLNSRPLVPSSDDPNDMTAITPAHFLIGREFQAVLEPSYAHIKTG
FT                 RLSRWQVLQDLKQKYWRTWSTDYLQELQRRQRDFKTTKFKVGALVLIVDDN
FT                 LPPLQWSLARITELHPGKDGHVRVVTLQTKDSVIKRAVKYVCLLPLDEEES
FT                 AEI"
XX
SQ   Sequence 6115 BP; 1791 A; 1272 C; 1556 G; 1496 T; 0 other;
     ttttttggtc catgcgagcc gaatgtgtgg ctgaaatcgg aaaatcgaat cgatcgcatt        60
     tcctagcgtg gaaattgcga aatcgcgaag tgaaaaccgt gtattgaaca gtttgagtag       120
     tgaaaaggaa cgccattgaa tcggcgtata cgtttgatag tgtctgggaa caaagagtgc       180
     gaacgcgaaa acaaaatggc gctaactgcg cacactccga aaggcaaaaa gaagggaaaa       240
     aatatggcgg acgatgcgaa tatcgggaac gagaatgaag atgattcgtc gcgtacgctc       300
     accattagcg agcaactcat tcagcagaaa tttaaggaag tgacccgaca aaagaaagaa       360
     gaatttgatg tgttgctaaa gaagaaagaa acggttgcgc gaaaactgac ccgtattcaa       420
     gttgctctgc aaaggcccga agcagcagac aagcattatc tgcaacttca ggtgaaaatg       480
     ttggaaagtg catacggtga atacagtgag ttgcagaatc acatatacga cctaaacacc       540
     agtgaagaag tgcgttgcgc ggaagaaatg cggtttattg agttcgaaga gctttacagt       600
     gtgctttacg ttcagctgac gaagcaaatc gacgccgtag tgaagaacga gacggaaccg       660
     gcattattgc aacccgttca taatcagccg catatccctc cgttgaaggc tccgttgcca       720
     acatttgacg gcaatttcga aaattggttc gcgttcaaaa atatgttcca gaatgtgatg       780
     gcacgttacg aaaatgaagc tccggccatc aagctgtacc atttacgcaa ttcgttgatt       840
     ggtgcagcag ccggcgtgat agaccaggac atcataaaca ataacgacta tgatgcggcc       900
     tgggagacgc tccgagagcg tttcgaagac aagcaagtga tcgtcgacaa gcatattgat       960
     gcgatgttca acataccggc catgacgaag gaaagtgcag ttagtcttcg aaagctgatc      1020
     gacacagttt cgaagaacgt cgatgctcta aagaacctgg aactgccggt gcaaggatta      1080
     ggagaaatga tgctgttgaa cgtgctggca aagaagctcg accttgaaac tcgcaaggcg      1140
     tggggattga accagaagga caatgaattg gcggattacc aatcgacgat ggaattcatc      1200
     aaagaaaggt gtaaagtgta cgaaaaaatc agccgtagca gcaaggctac agtggaagtg      1260
     gtgaagcaag tgcgatccgc tgggaaaaca gactcaaaag tgcatagcct tgttgctacc      1320
     aatgaaaagt gtacgcactg caaaggagat catgaaatct ggaagtgtga actgtttaaa      1380
     aaagtgaact tgagtgaaag gtacaattca ctacgcaaga gtggatcctg tttcaattgt      1440
     ttggaacgag gacacattac aggaaagtgc aaatccgaac ggtcgtgcaa gcagtgtggc      1500
     aaacgccacc atacgtcact gcatcccgtc gatacgtatc cgggagattc aacaacaacc      1560
     aagtgtcgcc tcgaagagcg aagcatcgaa gccgtcgaca gaggtcgcta atactacggc      1620
     agcaccatcg actaatggat ctgttctttg ttcgaacgtc gaagctgatc aggacacgct      1680
     actggcaaca gccattgcac ttatccacgg tgctagaaaa cgaacggtgc agtgccgagc      1740
     agtattggac tcagcttcgc acaagcattt cattacggaa gcattggtag ctaagctcgg      1800
     attgaaacgg aagaaggcta actatacgat cgttggcatt ggaggtaacc agctagctat      1860
     ccagcacaag gtgcatgcga ggatcaaatc gaatgttagt gaatacgagt cacagtgcct      1920
     tgaattcctg gtcgtcaaga aaatcacggg tgatcttccg atgcagcctt tcgaaatagc      1980
     ccagctgaac ataccagaag accttcagtt ggctgatcct ggattcaatg tgcccggtca      2040
     ggtcgacatt ctgattggat cgggtttatt tttcaagctc atcaaacacg gacaactgca      2100
     gttggcagat catttgcctg ctgtacaaga aacttcgctt ggttggattg taagtggttt      2160
     gattccaact agccagatgg gcgttggcgg tacgctctgc acgatagtaa cccaagatga      2220
     catcggtaag ttacttgaac ggttttggca ttttgattcc tatgacgaag cagctccggt      2280
     gcttgagcgt tcacttgagg acgtttgcgt cgcgcatttt ctcgaaacgc accgacgtga      2340
     cgaaaacgga agatttgtcg tgcggctccc tttcaacgag gcaaaggaga agctgggcga      2400
     ttccgaaacc atggccagga aaaggttttt tgcagttgag cgaagactgg ataaggatcc      2460
     ggatctgaaa cgacaatacg ttgacttcat gagcgagtat gcagaattgg ggcatatggt      2520
     agaagttacg ccttcgcaaa atgaaaatcc aacagatgcg ttttatttgc cccaccattg      2580
     tgtactaaag ccgaccagct caaccacaaa acttcgcgtg gtgttcgacg gttcggcgga      2640
     atcgccgaca ggagtgtccg tcaatcaaac gcaaatggtt ggcccgacag tacaaaatga      2700
     tttggtgtcc atacatttga ggtttcgaac gttcccgtat gcaatcagcg cagatattcc      2760
     gaaaatgtat cgacaagttc ggatggacga tgattttctg cgggttttct ggcgaagcaa      2820
     ccgtgatgat ccgttgaggg tatatgcgct gaaaacagtt acatacggtc ttgcatcatc      2880
     gcccttcttg gcaacgatgg cactgcgaca gctagctgat gaagaagaac atagatatcc      2940
     actggccgca tcaaccgtga agaaatcctt ttatatcgac gatatgcttg ccggtgcgaa      3000
     ttctttggaa gaggctgtgg aacttttgcg acaggtgacc ggcttgctgc acgacggagg      3060
     gttcgacata cacaaagtgt gttcgaattc aaaggagcta ttggacatgg ttcccgagaa      3120
     caaacgagag aagcttggag tgattgatga cgccgctatc aattgtttga tgaaaacact      3180
     tggaattgtg tggaatcctg tctgtgatgt attcacattc cgcattgcag aagttctccc      3240
     agcgacacaa ttgaccaaac gggtgatatt gagtgaaatt tctagaattt tcgacccgct      3300
     tggttttctt ggcccagtgc tcacagcggc caaattgatc atgagggagt tgtggcttct      3360
     cgatctccat tggggcgatg ctttgccaca ggacttggtg gagctttgga tggagtttcg      3420
     tgaccaattg cagtcattaa acggactgga gatcccacgt tgtgtgttga atcgggattg      3480
     cattggtatt gaacttcatg gatttgccga tgcatccgat ctagcatttg gagcttgtct      3540
     ctacgcccgg tcagtgttcc gagatggaaa ggctgaaatg agattgattt gtagcaaatc      3600
     gagaatacta ccgaagaaac aaggaacgaa aaaggaagta actacaccgc gtgctgaact      3660
     gcaagcagct cttctattgg ctcgtcttgc cgtgaaattg attggtgcca tggagattca      3720
     atttgcgtcc gttgtcctat ggagcgattc tcagatagta ctctgctgga tcaagaagtc      3780
     tccggattcg ttgaaaatct acgttggaaa tcgagtgaag gaaatccaga tgctgacgaa      3840
     cgagtttgtt tggaggtaca ttccatcgaa attgaatcct gctgacctca tttcaagagg      3900
     ggttcagccg aaccgactgc gagaacagca agtttggtgg accggactgt aggagatata      3960
     cgtgcttatt tataagttaa gaaaatatat ttcatagaat tgtgcaataa tattgagtac      4020
     aattacgaat agattgtttc ttcagttaat ttataataaa acgttattta tctgaacaaa      4080
     aaataataaa acaaatttta catacatgta attccaagct aagacaattg gcaaaaatct      4140
     tcaaatcatc gaataatgta ttcgacaaca ctgcatcgat agagagcgaa acagatcttg      4200
     aagagagcga gcttccatac gtgcgctcac ctgacggctg atgcggaagc gaagcgatga      4260
     atcacgaaca caacgacgga gaggggaaac gaacaagaga aaaagcattg aaaatgtaga      4320
     tgaagggaac tgtgaacggc tgaatgagat cagttttgag atgtatgttg tgaagtgcgg      4380
     atatgtgtaa tttgttgaaa ataagtaaaa aaaaaaaaaa aagtttgaaa caaatagtgt      4440
     ttttattttg aagaattcct acacggaccg gacgccctga agcaagcgaa ctttcagttg      4500
     gatgatccac ccctgattca ggaagcttct attcccgaac tgcgaggaat tactctgttc      4560
     agcacgagcg tttgccaacg attgaaaatg tttgacaacg tgagccggtt ttccataatg      4620
     cagagagcca tggcttacgt gattcgtttt acggactaca tcagaagcgg acggcagcaa      4680
     cttacaaaag ggttgcctac tgttgatgaa atgaaacgtg ctctgttgct gattatacga      4740
     ctgatccaga aggaatgctt cagtgacgaa attcgtgcgt tggaggagga gaaggaattc      4800
     aagtatccat tgaaatgttt gaatccgttt atcgatgaga aggacgatac tctgcgtgta      4860
     ggaggacgaa ttcgacatgc ccagattcca tatggcagca agcaccagct tctgctgcct      4920
     tctagacacc cagtaaccgt tgcaatcatt cgatatctgc ataaggccaa catgcacatc      4980
     ggtcaacgag ctttgcttgc tgttgtgagg caacagtttt ggcctcttcg agcgaaaaat      5040
     gtaattcgtg acgtcatcca taagtgcacc ccatgctatc gtgcccatcc gaaaagagct      5100
     acgcagttga tgggagactt gccggagtac agggtccaag ctgcgtatcc attttgcaac      5160
     gtcggaatag atttcgccgg gccgttcacg atgagagcgg ctgtgtctac aaagaaaagt      5220
     ttgattacta aggggtacgt gtgtgttttt gtgtgtatgg ccacgcgtgc tatacatttg      5280
     gaggcagcgt caaatctctc gacggacgca ttcttggcct cacttcaacg gttcgtcagt      5340
     cgaagggggt tacccacgaa gatcttttcg gataatgcca ccaattttgt tggtgcgaat      5400
     aatgagttga cgaaacttgc cgatcttttc caaaccgaaa tgcaccagaa gaagctcaat      5460
     ggattttgtg ttcaacgaaa catcgagtgg tcctttattc cccctcgcag tcctcacttt      5520
     ggaggaatat gggaggccgg agtgaagtcg gccaaatttc acctgcgacc cattttagca      5580
     gatcacaaac tctcgtacga agagctgacg acggtattgg cgcagataga agctactttg      5640
     aattcgcgcc ctttggttcc gtcttccgac gatccaaatg acatgacagc tatcacgcca      5700
     gcccattttt tgataggcag agaatttcaa gcggtactcg aaccatcata tgcgcacatc      5760
     aaaaccggaa ggctgtctag atggcaagta ctacaggacc tgaagcaaaa atattggcga      5820
     acctggtcaa cagattatct acaagaactt cagcgacgtc aacgggactt caaaacaact      5880
     aaattcaagg taggcgcatt agttctcatt gttgatgaca atctgccccc acttcagtgg      5940
     agccttgcgc gtattacgga gttgcatccg gggaaagatg gccacgtgcg tgtggttact      6000
     ttgcagacca aggactctgt catcaaacgg gcggttaaat atgtgtgctt attaccgctt      6060
     gacgaagagg agtcagctga aatttgaaat gcagccattt caacggccgg gaaga           6115
//
ID   BEL-43_AA-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   AAGE02017492;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_AA_;
KW   BEL-43_AA-I; BEL-43_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017492; Positions   28083   28300.
XX
SQ   Sequence 218 BP; 68 A; 49 C; 33 G; 68 T; 0 other;
     tgttctcgct ataataatcg ctaaagcaaa tttgattcag tgttatccta ccaaactaca        60
     taaccttgat tataattcaa cttcccatga aatttgccaa cactgtatga aacagaaaat       120
     aaagcagtca ttgttaagaa gctcacgcga gcggtcgttt tttatttcgc taacgctgag       180
     ccctattcga ttatacagtc cactctcttg gagctaca                               218
//
ID   BEL-43_AnFu-I repbase;    DNA;    INV; 5427 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5427
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 690-690 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..5381
FT                 /product="BEL-43_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPASAVILSSRRAILLVSLDRHEKFLLDFLPERDAIE
FT                 IETRITKFDQLSIDLEKIQGQLEDLAITEEEIAHNAALRDDFEPRLIRAHS
FT                 QLKAKRVHVPRSISSTPNAGPSPLVGIKLPTIALPEYDGDYMQWLTYRDTF
FT                 EGLIHDNPELPPIQKFHYLRASLKGEAAKVIESITISAANYEIAWKILTER
FT                 YSNEYLLKKRHLQALFGMATMKRESASTLHHLVDEFERHKKTLNHLGENTD
FT                 AWSSVLEHLLCTKLPTTTLRDWEEFASTNENPSYEGLVQFLQRRMRVLETL
FT                 MVNNTDAPSSGNHTHFTHKQSNLTRLASFPSTSHETRRCIICQQEHSITKC
FT                 PRFMTMGPEERYRQVMSNKLCLNCLRDNHRARDCSSQYKCRHCHSAHHTLL
FT                 HNVHNAQGALPTANTMPAARNVPVSHPQNKDDHATNTQRHHVAAHASQQTY
FT                 DHVFLQTAVVHVADSHGTLHPVRALLDSASQPDLMSTRLAQRLALKLDTVN
FT                 VTLIGAGHSSTPVRKSVRAKISSRTGQYQLNADFLIVDNLIGDLPAHDVRT
FT                 AEWQIPPNFMLADPQFNKSAPLDLILGARHYHAFFQSGAQYKISYNLPVLI
FT                 ESVFGWIVTGSASACNNNTETSNASSVVCMSTLEESLERFWKVEELQIRDG
FT                 YSPEERYCEKLYQDTTQRDDTGRYIVRLPKQPDFEEKLGLSKLSALRRFTM
FT                 LERRLERDPHIKAAYHEFMHEYLELGHMSLIQAPADDESAYYLPHHPVFKA
FT                 SSTTTKTRVVFDGSAKTSSGYSLNEALCVGPAVQDDLLDIILRFRTYKVAV
FT                 VGDIAKMYRQILLHPDDRKYARICFRFDAHSPIQYYELNTVTYGLSPSSFL
FT                 ATRTLQQLANDEGTTYPVAASALKSNFYVDDFIGGADSIESARRLRVELDE
FT                 LLSRGGFELRKWTSNRLEVLTGLTADQIGTQSALQFIPDETVKTLGVSWEP
FT                 EHDVLSFESAIDTDTASPTKRSILSNIARMFDPLGLISPIVVRAKILMQEL
FT                 WLQKAGWDDLVPDSICKKWKNIQQDWPLISGFKIDRYALLPGSKLQLHTFC
FT                 DASEAAYGACIYVRCESEQGEVRTTLLSSKSRVAPLKRVTLPRLELCAAVL
FT                 GAHLYDRVKKAMGLHAAEVFFWSDSTVTLKWISASPNTWATFVGNRVSEVQ
FT                 HYTHPRQWRHVPGSTNPADLVSRGMSAADFLQSKLWSCGPEWLALPASNWP
FT                 NCNPEPAEDTNLEIRQVSAAYVNTITNPWFTLCSSYTRLLRIVAYCIRFTR
FT                 NTKEKARTQRTPTHFASPLVITPEYMEAAKTVLCRLAQQDAFSAELRQLAK
FT                 GEAIGRQSPLRRLNPFLDEQGIIRVGGRLKLSQLPYQSQHPIVLPKKHKFA
FT                 HLIATHYHEQLMHGGGRLLLSQIREAYWPLDGRCLVKKIVRNCFRCIRHDP
FT                 TLEQQQIGQLPPPRVIPSRPFSVTGVDYAGPFYLKPAHRRAAAVKSYLCVF
FT                 VCFATKAVHLELVGDLTTAGFLAALHRFASRRGLPAHIHSDNGKNFEGAAH
FT                 ELSELVNMLNDEQQQHIIATNCANKGITWHFTPPKAPHFGGLWEAAVKTAK
FT                 RHLYRHLGSSRLSYEGYCTILQQIEAAMNSRPLLPMSDDPNDLAALTPAHF
FT                 LIGTSMHAVPVPDYTKLKAYTLDELQRWQLIVQRFWKHWATEYLQEMQKDN
FT                 MRHHRTNDILPGRLVILLDESLPTTRWPLARIVAIHPGEDQLTRVVKLQTV
FT                 KGIITRPINKICLLPLADGETTC"
XX
SQ   Sequence 5427 BP; 1484 A; 1424 C; 1237 G; 1282 T; 0 other;
     tggtgccgtg accaggatac gccgaattgc tggttattaa tttgcggatt ctcgcgacct        60
     gttttttcct acgcataacg caaattttat cgcgacacaa cactcccgtt ttttcgttac       120
     cgctgacgaa gctattacca tcgtgtctga tcatgccagc gtctgccgtc attctatcgt       180
     cccgaagggc aattttgctg gtctcattag atcgccacga aaagttcctc cttgattttc       240
     tcccggaacg agacgctatc gagatcgaaa cgcgcataac aaagttcgac cagctgtcca       300
     ttgacttgga gaaaatccaa ggtcagctag aggatttggc aatcaccgaa gaagaaattg       360
     cgcacaatgc cgctttacgc gatgattttg agccgcgctt gatacgcgca cattcccagc       420
     taaaggctaa aagggtgcat gttcctcgaa gcattagttc cacaccaaac gctggcccga       480
     gccccctagt aggcattaaa cttcccacca tcgcgcttcc cgaatacgat ggtgattaca       540
     tgcagtggct aacgtatagg gacacttttg agggcttaat acatgataac cccgagctac       600
     cgccgatcca aaagttccac tatttgcgcg catccttaaa gggagaagcc gctaaggtta       660
     ttgaatccat caccatcagt gccgcaaact atgaaatagc atggaaaata ctgacggagc       720
     gttactctaa cgagtacctg ttaaaaaagc gtcatttgca agccttattc ggaatggcca       780
     ccatgaaacg ggaaagtgcc tcaacccttc accatcttgt cgatgagttc gagcggcaca       840
     agaaaacgct aaaccacttg ggtgaaaaca cagatgcttg gagtagcgta ttggaacatt       900
     tgctatgcac aaaattgcct acaacaacgt tgcgcgattg ggaggaattt gcatcaacaa       960
     atgaaaatcc aagctacgaa ggcttggtgc aatttttgca acgccgaatg cgagtgctcg      1020
     aaactctgat ggtaaacaat accgacgcgc cctctagcgg aaatcacacg cacttcacac      1080
     ataaacaatc gaatctcact cggctggcta gttttccgtc tacctctcac gaaacacgta      1140
     ggtgcataat atgccagcaa gagcatagca tcacgaaatg tccgcgattc atgactatgg      1200
     gtccggaaga acgatatcga caggtcatgt ccaataaact atgtttaaat tgtttgcggg      1260
     acaaccaccg agcgcgcgat tgctcctcgc aatacaaatg cagacactgt cactcagcac      1320
     accatacact gttacacaac gtacacaacg cacaaggagc acttcccact gcaaacacca      1380
     tgccagctgc gcgaaatgtt ccggtaagcc atccacagaa caaagacgat cacgccacaa      1440
     acacccaaag acaccacgta gcagcacacg caagccagca aacatatgat catgtgtttc      1500
     tgcaaactgc cgtggtacac gttgctgatt cacatggtac tctgcatcca gtgcgagcac      1560
     tattggatag tgcctcgcag cctgatttga tgagcaccag gcttgctcag aggttagcgt      1620
     tgaaacttga tacggtcaac gtaacgctca tcggtgcggg tcactcttcc accccggtgc      1680
     ggaaatcggt gcgtgcgaag atttcctccc gaacgggcca atatcagctg aatgctgatt      1740
     tcttgattgt ggacaatttg attggggatt tgccagcaca tgatgtgcgc accgccgagt      1800
     ggcaaattcc gccgaatttt atgcttgccg acccccagtt taataagtcg gcaccgctcg      1860
     atcttatcct cggtgcccgg cattatcatg catttttcca gagcggggcg caatataaaa      1920
     tttcgtataa ccttcctgtc ctcattgaaa gtgtgttcgg ctggatcgtg accggctcag      1980
     catcagcatg taataacaac accgaaactt ccaacgcatc ttccgtcgtc tgcatgagca      2040
     cgcttgagga atcactcgag cgattctgga aagtggaaga attacaaata agagatggtt      2100
     actcccccga agaaaggtat tgcgaaaaat tataccaaga tacaacacaa cgagacgata      2160
     ctggtcgtta tattgttcgt ttaccaaagc agcctgactt tgaagaaaag ctgggtcttt      2220
     cgaaattatc agctctacga cgttttacaa tgctcgaaag gcgcctagaa cgcgatcctc      2280
     atattaaagc ggcataccat gaattcatgc atgaatattt ggagctaggg cacatgtcgc      2340
     tgatacaagc tccagctgac gacgaatcag catattatct gccgcaccat cccgtattca      2400
     aggcttcgag cacaacaaca aaaaccaggg tggtgtttga tggatcagcg aaaacatcat      2460
     ctggatactc gctcaacgaa gcgctatgtg tcggccctgc agtgcaggat gatttgctgg      2520
     acatcattct gcgattccgc acgtataagg tggcggttgt tggagacatt gctaaaatgt      2580
     accgccaaat actactgcat ccagacgata ggaagtatgc ccgcatttgt ttccggtttg      2640
     atgcgcattc accgatccag tattacgagc tgaacaccgt aacctatggg ttgtccccat      2700
     catccttcct tgcaactcga accttgcagc agcttgcaaa cgatgaggga accacatatc      2760
     ctgttgccgc atccgctctg aagagcaatt tctacgtgga cgacttcata ggcggtgcgg      2820
     attcgatcga aagtgctcgg cgtctacgag tagagttaga tgaattactt tcaaggggtg      2880
     gttttgaatt acggaagtgg acttcaaacc gattagaggt gcttaccggt ctaactgcgg      2940
     atcagatcgg cacacagtca gcgctacagt ttatacccga cgaaacggta aagactcttg      3000
     gagtttcgtg ggagccagaa catgatgttc tatcattcga gtccgcaatc gacaccgaca      3060
     cagcaagtcc tactaaaaga agcatcctct ctaacatagc ccgcatgttc gatccgcttg      3120
     gcctgatttc tcccatagtc gtacgagcca aaatcttgat gcaggagttg tggttgcaga      3180
     aagctggttg ggacgatctt gttcctgatt ctatctgcaa gaaatggaaa aatattcagc      3240
     aagattggcc actcatatcc ggttttaaga tcgatcgcta tgcgctgtta cctggtagta      3300
     aattgcagtt acacaccttc tgtgacgcat ctgaagcagc ttacggggcc tgcatttatg      3360
     ttcgttgcga aagtgagcaa ggggaagttc gcaccacttt actttcatcc aagtcgcgag      3420
     tggcaccact taagcgtgtc acactacctc gactggaact gtgtgctgca gtattaggcg      3480
     ctcatcttta cgatcgagtc aagaaggcga tgggactaca cgcagcagaa gtattctttt      3540
     ggtccgattc taccgtcacg ttaaagtgga tcagcgcctc acctaacacg tgggcaacgt      3600
     tcgtaggcaa ccgagtatcg gaggtgcagc attatactca tcctcgtcag tggaggcatg      3660
     ttcccggctc aactaaccct gccgatctcg tctcacgcgg catgtcagca gcagatttcc      3720
     tgcagagcaa gctgtggagt tgcggtccgg aatggctagc actacccgca tccaactggc      3780
     ccaactgtaa tcctgaacca gctgaagata cgaatctcga aattcgtcag gtgagtgctg      3840
     cctatgtaaa caccatcact aacccttggt ttacgttgtg ttccagctac acgcgattgt      3900
     tgcgcatcgt tgcatactgc attcgcttca cacgtaacac taaggagaag gcacgcactc      3960
     aacgaacacc aacacacttc gcatcacctt tagtcatcac tcccgaatac atggaagctg      4020
     ctaaaactgt gctatgtcgt ttagcacagc aagacgcatt ttcagcggag ctacggcaat      4080
     tggcaaaagg tgaagcaata ggaagacaat caccactacg gcgactcaac ccattcctcg      4140
     atgagcaagg aataatacga gtaggaggac gattgaagct ttcgcagctt ccctaccaat      4200
     cccagcatcc catagtactt cctaagaagc acaaattcgc acatctaatt gcaacccact      4260
     atcacgagca acttatgcat ggcggcggaa gattattgct gtcgcaaata agggaagcat      4320
     attggccact agacggaagg tgcttggtga aaaaaatcgt gcgaaactgt ttccgttgca      4380
     tacgtcacga tcctacactc gagcaacaac aaatcggcca acttccacca cctcgggtca      4440
     ttcccagccg gccgttctcc gtaaccggag tggattacgc tggcccattc tatctgaaac      4500
     cagcacatcg tcgagctgcc gctgttaaaa gctacttgtg cgtatttgta tgcttcgcaa      4560
     cgaaagcggt ccacttagag ctggtgggcg acctcaccac agctggtttt ctggcggcgt      4620
     tacatcgatt tgcatcccgt cgcggtttac cagcgcacat acactcagac aacggaaaga      4680
     atttcgaagg cgctgcgcac gagctcagcg aactggtcaa catgctgaac gacgaacagc      4740
     agcagcacat cattgccacc aattgtgcca acaaaggtat cacttggcat ttcactccac      4800
     ccaaagctcc acacttcggt ggattatggg aagcagcggt gaaaacagcc aaacgacacc      4860
     tctatcgtca tctaggcagc tcgaggctgt catacgaagg atattgcact atccttcaac      4920
     aaatcgaagc ggcaatgaac tcccgaccct tactgcctat gtccgacgac ccgaatgatc      4980
     tggcagcact taccccagcg catttcctca tcggtacgtc catgcacgca gttcctgttc      5040
     ctgactacac caaattgaag gcgtacactc tcgatgaact gcaaaggtgg cagctaatcg      5100
     ttcagcgatt ctggaagcat tgggctacgg agtatctgca ggaaatgcag aaagacaaca      5160
     tgagacatca ccgaaccaac gatatactcc ccggccgatt ggttatacta ctggatgaat      5220
     ccttaccaac aacccgatgg cccctagcac gcatcgttgc aattcatcct ggagaggacc      5280
     agctcacacg tgtggtaaaa ctacaaacgg taaaagggat catcactcgt ccgatcaaca      5340
     aaatctgctt actgccgtta gcggacggtg aaaccacatg ctagttcctt tcgcctttgt      5400
     tatgacattc tgtcatgggg gggagta                                          5427
//
ID   BEL-43_AnFu-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-234
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 745-745 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 234 BP; 80 A; 47 C; 45 G; 62 T; 0 other;
     tgtttacaca agaataacaa tatagtggta taaaccgaca gtttgctggt ttcgtcaagt        60
     ttcagcaact gtcgtattgt gagtgccggt ggcactcagt gggcactcag agaaaaggtt       120
     ataaaaggaa aaacaaataa acaaaatccc tcttcttcgc ttaaaaatcc cgccaatcgt       180
     acggtaacta ttctagaaag aaaattcagc atccgaattc cgcaagtttg ttca             234
//
ID   BEL-43_CQ-I repbase;    DNA;    INV; 3007 BP.
XX
AC   AAWU01000931;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_CQ_;
KW   BEL-43_CQ-LTR; BEL-43_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3007
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 239-239 (2011).
XX
DR   GenBank; AAWU01000931; Positions   38684   41690.
XX
CC   'CCGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..3006
FT                 /product="BEL-43_CQ-I_1p"
FT                 /translation="MDQTMKKKLTYALQQRHLAEQKVVFVEDLLLGLYQPT
FT                 LPQLTTLYDFLCAAFREYSQHHLTVLELIPIEDLAQQEAEFERNDASFYNV
FT                 ATAVAEMQIEAERKPTSTLIAQRQQHLQAKVWLKQMHKAWEANQVDVPKPA
FT                 PSHKLLQNQQTAPTRPIVIDSASGLGDKSLTIQSSDQPSAADSRSARDINA
FT                 NPNANARSDLLEATSCESKVVTAESESGRVQPAMVRCSDDEADQRHVCSDS
FT                 GLQRGVQIHNHSQIQICRLRIGSIPNLTTLMTVPENQPLLQAAARAPDKCE
FT                 VPFSSHVTPDKIAVHKPTRNPPKLAPLDQCKTGLPPKPLQEQQTATAEPVA
FT                 IESTYKLGSDSRPSQNAEQPNSVASRLSEKVTTNPSMDTKSDFPDESSSEP
FT                 THPTGHLKDVTTEAELDNELPAVFPSKQVPPHNSDLKPEATVKTEPLQPKV
FT                 VQNSIHHGEPEQRRVHSDSGLQKMDVPESEQKPNCFHQNGSYNMDFAMVMT
FT                 VPVYKPLPQPAAKAPDKRRLPLPSRVHLDKSVVHVEEGRPPDDLVLAGEPE
FT                 LKCSRSTQSRSHSEPASSEMHVVNQSRKRHKSVSNLSNLTPYKFANVHTSR
FT                 RVPSIQITNRQRWCTIWFLIAQVQSQPVALNLVISMIGPQGSFHEPPSQNE
FT                 PFQVRDQLSRFQRTVYRRRKSWHSTIPPDKSRDPESAQPCKRRSNLREFHA
FT                 VLPAIEDVGERREPADQSAAIHRKRCVGRTKELRDLNGGS"
XX
SQ   Sequence 3007 BP; 791 A; 942 C; 766 G; 508 T; 0 other;
     tggtcacatc gaaccggatt tgaaaccagc tcaagcctcc aggattgaag tcgtcggttc        60
     caaccgggac tagcccagcc gctccgaaag caaccggaga gtaccaagaa gcgctactgc       120
     ccaagttccc cctgcgtcca atcgcagttc gaccgtttcc gagagactgt ccagccgtgg       180
     aggtcatcgg aagtcggatt cccggaagtg tccaccctag gaacttcctt tctgcagttg       240
     aaccgtcgaa ctgaactcgc gcggatgcac aaagccggcg agtcgttcct gcccaagttt       300
     tcccgttcgc tccatacccg cgttccggaa gcgaccggaa agtgccggcg agagctcctg       360
     tctaagttcc ccacctcgct gccccatcga ccatttccga gcgactgtcc agccgtggaa       420
     gtcatcggga gtcggatatc cggaaggtaa ctcgcgcgga tgcacaaagc cggcgagtca       480
     ttcctaccca agttccccct gctgtccatc ctaggaactt cgtccaagca gttcacccga       540
     cgaattgctc tcgcgcggat gaacaaagcc ggcgagtagt cccagttcaa gcgttcccga       600
     tccaacccgt tccgagccga actcgcgagc aaatgcgttt gcgcgcgtgt gtgtgtcacc       660
     gatcaaaaaa gtgacgcaac gagaagtgtc gtcggccatc cgaggggacg aacttttcca       720
     gacgaagcga cccagcagca caaaccaaat cctcgacgtg ggcttcccag ctagcgggaa       780
     gcggccatgg atcaaacaat gaagaagaag ttgacatatg cgttacagca gcgacatctg       840
     gcggaacaga aggtggtgtt tgtagaggat cttcttctgg gtttgtacca acccacgcta       900
     ccacagctga caaccctgta cgacttcttg tgtgcagcgt tccgagagta cagccagcac       960
     cacctcacgg tcctcgaact catcccaata gaggacctcg ctcagcagga ggctgaattc      1020
     gagaggaacg atgcgagttt ctacaatgtt gccactgcgg tggcagaaat gcagatcgaa      1080
     gcagagagaa agccaacatc aaccctgatc gcgcaacgcc agcagcactt gcaagcaaaa      1140
     gtatggctga aacagatgca taaggcctgg gaggccaacc aagtggacgt tccaaagcct      1200
     gcaccgagcc acaaactcct ccagaaccaa cagactgctc ccacgaggcc gatcgtcatc      1260
     gattctgcca gcggacttgg cgacaaatcc ctgacaatcc agagctcgga ccagccgagt      1320
     gcagccgatt cccgatcagc gagggatatc aacgcgaacc cgaatgcgaa cgccaggtct      1380
     gacttgctcg aggcaaccag ttgtgagtct aaggtcgtca ccgccgaatc ggagtcaggc      1440
     cgagtgcagc cagcaatggt gcgatgttcc gacgacgaag ccgaccagcg ccatgtctgc      1500
     agcgatagtg gcctccaacg tggggtccaa atccacaatc acagccaaat ccagatttgc      1560
     cgcctccgga tcggatctat cccgaacttg acgactctga tgaccgtccc ggagaaccaa      1620
     ccgcttctgc aggccgcggc tagggcacca gacaagtgtg aagttccctt ttcaagccac      1680
     gtaactccgg acaagatcgc agtccacaag ccaacaagga atccgccaaa actagcgccc      1740
     ctcgatcagt gcaagaccgg attaccaccc aaacccctcc aggagcagca gacggcaact      1800
     gcggagccgg tggccatcga atccacctac aagcttggca gcgattcccg gccaagccag      1860
     aacgcggaac aaccgaattc agtcgcctcc cgactaagtg agaaagtcac cacgaacccg      1920
     agtatggaca ccaagtccga cttccccgat gagagtagca gtgagccgac gcatccaacc      1980
     ggacacttaa aggacgtcac caccgaagct gaactcgaca acgagctgcc agcagtgttc      2040
     ccgtccaaac aagttccccc acacaacagc gaccttaaac cagaagcgac cgtgaagact      2100
     gagccactac aaccgaaagt ggttcaaaat tccattcacc acggcgagcc agaacaacgc      2160
     cgtgtccaca gcgacagcgg tctacagaag atggacgtac cagaatccga gcaaaagccg      2220
     aactgcttcc atcagaacgg cagttacaac atggactttg cgatggtgat gaccgtccca      2280
     gtgtacaaac cgctgccgca gccagcggcc aaggcaccag acaagcgtag acttccctta      2340
     ccaagccgcg tacatctgga caaaagcgta gtccacgtcg aagaagggcg tcctcccgac      2400
     gacttggttc tcgccggaga acccgagttg aagtgtagcc gatcaaccca atcccgatcc      2460
     cactccgagc ctgcatcgtc agaaatgcac gtggtcaacc agtcgagaaa acgccacaag      2520
     tcagtaagta atctgtccaa cctaaccccg tacaagttcg ccaacgtaca cacgagccgt      2580
     cgtgtgccca gcatccagat cacaaaccgc cagaggtggt gcaccatctg gtttctgatc      2640
     gctcaagtgc agagtcaacc agtcgcgttg aatctcgtga tctcaatgat tggcccccaa      2700
     ggtagctttc atgaaccgcc cagccaaaat gaaccgttcc aagtacgaga tcaactcagt      2760
     cgtttccagc gaacggtcta tcgccggcgc aagagctggc attcgacaat cccaccggac      2820
     aagtcacgcg atcccgagtc agctcaaccc tgcaagcgca ggagcaacct ccgagagttt      2880
     cacgccgttt taccggccat cgaagacgtc ggcgagcgac gagaaccggc ggaccagtcc      2940
     gcagccatcc accggaagcg ttgtgtgggc cgaaccaaag agttgaggga cctcaacggg      3000
     gggagta                                                                3007
//
ID   BEL-43_CQ-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   AAWU01000931;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_CQ_;
KW   BEL-43_CQ-I; BEL-43_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-290
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 240-240 (2011).
XX
DR   GenBank; AAWU01000931; Positions   38394   38683.
XX
SQ   Sequence 290 BP; 90 A; 77 C; 75 G; 48 T; 0 other;
     tgttcggtac gaacgaagcc agaaacccca ccgtgacgac catctgcgtt gccgacgacg        60
     agggagaaac gtcatttgca acacaccaag agcgcgcggg cagcgcgcca agtaagtccg       120
     catacaacct ccgatcgaga aggacgaagc atagtttttt agagtagtag caggaggaag       180
     aaggaaaagt gggagaaata aaagtagaaa acgtaatctc cggtgttttc cgttccccgc       240
     aactaacaac catacagtcc accgtttccc atgtcggcca ggcccgaaca                  290
//
ID   BEL-43_DTa-I repbase;    DNA;    INV; 2213 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2213
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5650-5650 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 2213 BP; 694 A; 587 C; 453 G; 475 T; 4 other;
     ttggtgaccc cgacgtgatc ctttaccaac aaaggatcac accctgcaac ccccttcaaa        60
     ctcaaggctg aacctctaac tgatgagaag caaagttaag ttcacactca gctgcatcaa       120
     gcttcacagg aaccgcatag cttatccagc ttcacaggac cgcatagctt atccagcttc       180
     acaggaaccg catagcttat ccagcttcac aggaccgcat agcttatcca gcttcacagg       240
     accgcatagc ttatccagct tcacaggacc gcatagctta tccagcttca caggaaccgc       300
     atagcttatc cagcttcaca ggaccgcata gcttatccat tatccagctt cacaggaccg       360
     catagcttat ccagcttcac aggaccgcat agcttatcca gcttcacagg accgcatagc       420
     ttatccagct tcacaggacc gcatagctta tccagcttca caggaccgca tagcttatcc       480
     agcttcacag gaccgcatag cttatccagc ttcacaggac cgcatagctt atccagcttc       540
     acaggacagc atagctcatc cagcttcaca ggacaacacm gcttcatcca gctccacagg       600
     atcaatcacc ccatccggcc tatccatctw cctaaaatac cgagcatcat ccagattcac       660
     aggattcgtc atctccaaaa cacgagcmgt aactgcaaac attatgtcga tctcattcat       720
     agaggaaacc agtcaaaaca gagtcgattt acaaaatcgt ctgcttgacg atcagaatga       780
     ggtacaaggg caaatccaac aggtcataaa gaattatagc aaggattcgg ccgaacgacg       840
     caaacgagac ggctattatg ccggtcggct aagccagttg aacgatctct ggcagcagtt       900
     ttgtgatcta gacgaagagg tcgagaaggc ggcactacct accggagagg agtatgcctc       960
     aagattagcg gcattaaagg agctggtaga aaaatatcag caaatattta aagacaacat      1020
     cccatcggga agcgggcctc taaaagttcc gcggcgaaca cagaacacaa aggacccgat      1080
     agtcaaacac atacacactg gctcatcgat tgaagttgct atccgacaac tacagagacg      1140
     atgtaacgaa ttagaatcat ctctagctct ggcgtcaacg gcgcaaacaa tcaccccagc      1200
     gctacaacga catctgcatc tccaatggga actattgaga caggcccatg atgaagtcga      1260
     caatatacct ggagcagtgg ccgccgccga agcagaagta agtcgattca aggcactgta      1320
     cgaagagtat gaaattacct tacttcgaga gaacgacgcg ccaatgaacc taagtctttc      1380
     gcttccacca atcaagattc ctgaatttga tggcgaatat ctagattggc ccagattcca      1440
     cgatttattt gtagaattag tccataataa gccatactcc gccagccaga agctacacat      1500
     tcttcagagc tctctttgcg gtgaagcaag gaacattttg acggatacag ccttctcaca      1560
     agctggatat gaggacacct ggaaaagact aaaactgagg taccaaaacg gcaaaatatt      1620
     agtgtttgct gcaatagsga aaatagtcga tcacatgccc atcaacggga ctgcacaaca      1680
     gcttcgagca ctacacgata cagtgcagaa gactttaagc acactcaaaa atctcgatat      1740
     cagcactaaa tcatgggatc caatccttgt ttttcttatc agaaaaaaac tggaccatga      1800
     gagcctagcc gcactggaaa attcagccga tgcaccaact gaaattccag tcttaacgag      1860
     tgtactgacg tttattgagc gccgcgcgtg catgtttgag acgataaacg cacaacctac      1920
     tacaacactc cgcaatccat cagtcaacaa cgaagagagc tgcaagattt gtcacctagg      1980
     acaacattac ataagggcat gtatccgttt tcaagaaatg gatcctaaaa cgcggcgcca      2040
     agttattatt caagtaggag gatgcacaaa ttgcttgtct acagctcata aggtcgaagt      2100
     ctgtaaatca tcagtcaact gtcgagtctg ccagcaacgg catcatacaa tgctacataa      2160
     ggtgaccgac atcacgcctt aattgagggt acccctcaat ggggggggga gaa             2213
//
ID   BEL-43_DTa-LTR repbase;    DNA;    INV; 442 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-43_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-442
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5666-5666 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 442 BP; 133 A; 127 C; 71 G; 111 T; 0 other;
     tgtttggtct caatgttgct caacatgacc aacgaccaac aaatcaagca gtactacagt        60
     ttggtaacag taccaggcgt ccagttgcac ccacggcaga taataagtgc tgatcagcat       120
     attctacata gtcaatgtca acggttgact cgatgtctca ctgacccgcc aagcggtcag       180
     cacattctgc agtgtcagcc gatccaacta cgctaaccgc tgccatagtc aaaacatact       240
     gacctactcc agaatacaac ccattccact attctttaca cttaacttcc tcatctccaa       300
     gtagtatata accatgtacc aagctcacaa taaatcagtt atcaacacat cttataactc       360
     cgcggtcttc ctttctgccc tccgggaaga ggactcgtat acaaacttat attgatccac       420
     aagccacgct tgggatcaaa ca                                                442
//
ID   BEL-44B_DTa-I repbase;    DNA;    INV; 4245 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   16-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44B_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4245
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 96% identity to the other LTR.
XX
SQ   Sequence 4245 BP; 1209 A; 1070 C; 855 G; 1111 T; 0 other;
     tttttggcgc acaacgtggg gcagttatta attaattaaa taattggcaa ttgtcggagc        60
     gcacgtctac atacatacat atgtgtgttc acatacacca catataactg gagcacgtga       120
     ttgatcaact ttcggctgtc cgcgctattt cacatcacat tggcaatcgt cgtcggagtg       180
     tgcagcttgt gccactcatc ccaaccatcg tagcaaggca tcctagctga gccgttcatc       240
     ttatcgtcgt tacactccat caatatcgtc gccgccggcc caacgccccg gaaccagcta       300
     aggctacggc atcatctgcc aacatcgcct aatcatcgca aggaacgctt ctcggagagt       360
     tacgccacgc gcgttcaacc taacctcgcc tcctcacctc aacatcactt ctacacattc       420
     gtccatcgat atctacattc tacagtagat ctacacacat tatcaagtct gtatacacat       480
     ctacaacttt actttgcaag acattaagaa aatctttagt caacctccac tattgcccaa       540
     ttagtgagtc tttatttcca tccttaacaa acatttcgtc aacaatcgac taaatctacc       600
     ttggctcaat aatttcaaaa tgtctgacct agaacaatta aaatcacagc gtttcaatac       660
     ccgtaggagt atgacacgta tcaaaaccat tgtggatcca atgcaacaac gctccgctgc       720
     ggatttaact tgtcgtctgt caatactcga agcctatttc aagcaggcgc tatcgttgca       780
     gtctcagatc gaggaattgg acgccgagga gataaatcgc gatacccgtg gagatataca       840
     ggagcttttt atcggaacaa aggtatgcat ccaggatcag cttggccctg atgcacacag       900
     tactgcaatt ggcgatataa atgtcaatct cgccaggcca gcaacaaaac tacctcgact       960
     cgcatcagcg atattttatg gcaagtactc tgaatatcaa aactttataa cattgttcag      1020
     ggaggttgtt ggaaatcaaa gtcaattagc acccatcgaa aagttcaatc agttattaaa      1080
     ttgccttcgt ggatcagcat tggaaaccgt taaggctttt caaattacat cggaaaatta      1140
     ccctaaggcc ttagaacgac taaaaactcg ctacgataac ccaacccttg tatttatcga      1200
     taatatagcc actctctttg ctctacctgg tgtccccaaa ccaaatggga aacaattacg      1260
     tagtcttatc gacaatgcct ctgctctcta taattcctgc ttgtccttgg gaaaagagtt      1320
     agatatcgct caattaatgc taatttcgat catcactagc aaggtagacc aggaaattat      1380
     tcgaaagtgg aatgagtccc tgaactacat cacgttaccc acttgggaca acttcgttaa      1440
     gcttatcgaa cgccattgtc agtacctgaa atctagccac ccatcacccg aaccgcaact      1500
     aatcaacttg agcaaccaga ggccacgccc acagaggcat caatctaact tatccttcag      1560
     ctgtacagct caaaactgtc tcatgtactc aagtgcggaa cacaaaatac ttcggtgccc      1620
     acagtatatt aatctctcgt tcgagaatcg tttcagtcac gcaaaaagat tagggctgtg      1680
     cctaaactgt gttagcaagg ggcatcaagt atccaattgt ccgtcatcgc aaagatgtcg      1740
     gacgtgttcg cgtacacatc ataccttact gcatagggaa tcatccggtc cggctctaac      1800
     agtcgctgca tcttcgcggc ctaatccgac gtacattccg gaggcagtaa ctcatacgca      1860
     acagcaacac gaccaagatc atgtcatcct ggcgactgcg ttagtcctgg tcaaggacgc      1920
     cagcggctgc tacagattgg gacgagcatt attggactcc tgttcgcaga tcaactttat      1980
     tactgatgag tttgcacaaa ctcttcgtat accacgaacg aagaaaatca ttaaaattcg      2040
     cagcttgggt gattcacgta cccaggttaa acatcgtact acaactagta tcaagtcccg      2100
     cttcaacgat ttcgaactta ctcttgattt ttgtgtcacc cctagtatcg ctcatcaccc      2160
     taacacagaa attgatatat cgtcatggag tttgccgcag aacacatccc ttgccgatga      2220
     atatttcaac aaatctcgtt gtgttgactt actccttggt acagagacct tttacgagat      2280
     tttgtcggtt gggcaaatca aacttagccc caaattacct gtactacaaa aatcgttgct      2340
     agggtgggta gtatctggcc gatgctataa ttcgtctctt cctcatcaat tatcatatac      2400
     tcaatcaatt atccaatcaa agaccaaatt aattaaaatc tcagcaaatt atggaaaatt      2460
     gaagaagtta agagttcaag tgagatttac acacccgacc aaacaagatg cgaagagata      2520
     ttcttaacca cagttcgtcg cgacatagaa ggtcgcgtta ttgttcgtct ccctttcaag      2580
     gacgattgta gtctgttagg agaatcaatt gatatagcta caaaccgatt tcgagcccta      2640
     gagcggcgat tacatcgaac acccggcatt agaaaacaat ataatgaatt tatgcaagag      2700
     tttcaagatc tgggtcacat gagcatggtt atggtgcgat tcacaaattg tattacactg      2760
     gatccgtcaa cattcagcca cattatcgac gttcgtaggc aattgcgtgt cggaggttca      2820
     agaggaaaca accgcttgcc gttggaggca tgttcctacg cacctcaacc ctgcagatct      2880
     tatctcgaga ggctgtacgg tggtcgtaaa gtagccgata gctcaccacc gtccgcagat      2940
     gaacttcgac gcgcgatgca ttgtattgct tggaatttac aaaagaagta ctttaacgag      3000
     gaatttaatc tgctgcaaag cggcaagcat attcgaagca atctcaaaaa tcttggcctt      3060
     ttccgctttt cgctgatgtt tctgacagcc aaaaacatca aatcttgttg ccaaacaaca      3120
     atcactttgt agaccaatac atgcggtacg ttcatctaaa aaacttccat gctggtcgtc      3180
     aacgccagga atgttgctcg ccgaatcgta cgttcgtgcg tacactgcgt acgatatcgc      3240
     ccggttttac tcaaccaaat catgggtcaa cttcccaagg atcggcttat cccctcgaga      3300
     ccattctcaa aatgcggaat tgatttttgc ggcccagtaa acatttacat gcgaattcgc      3360
     ggcaagccac ctagcaaggc gtatataagt gtgttcgttt gctttgtggt caaggccata      3420
     catatcgagt tagtctcaag cctgtcaacg gactcattcc tcggcgctct caaacgtttc      3480
     atagctcgga aggacgtcct tcggatgcct tctgtgacaa cgcaactaac ttcacgggag      3540
     caaacaacaa gttagaagca ctcaaagagt tcctgttcaa gaaggaaacc attgaaataa      3600
     caaattagtt ttgtaacaac gaatttataa attttcactt tatacccccc agggcacccc      3660
     attttggagg cttctgggaa tcggccgtca agagcgtcaa gggtcttctt aatcgaacat      3720
     tatgggatgc acgactttca tttgaagaac tcagcactgc gctcgctgaa gtcgaggcga      3780
     ttctgaactc tcgcccgccg tcgcctcttt cgtcggatcc aaatgacttg tcggctctca      3840
     ccccgggcca ctttttggtt ggcgatgccc ttcgcgcact acccgatccg ccggagactg      3900
     actccaagat ggagaactta gagcgttggc gacgagtctg tgccatcaag gatcaaatct      3960
     ggcgtcgctg gtcgctggaa tatattcaag aactacaaca tagaagccat tggactcagg      4020
     cgtcgcccaa tgtttccgtg ggcgacatgg taatagtaca tgaagacaac atgccaccac      4080
     aacgatggaa tctaggccgg atcgtcgcag ccattccggg aggagacaac agggtacgcg      4140
     ttgccgatat tcgtacaacc aaggaagttt gccgacgacc cattcacaag cttgccctat      4200
     tgccggtttc ttgaaagtca aggattactt tcaatggggc cggga                      4245
//
ID   BEL-44B_DTa-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   16-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44B_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-288
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5685-5685 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
SQ   Sequence 288 BP; 106 A; 57 C; 48 G; 77 T; 0 other;
     tgttggggac tagccccaaa gaatttgtaa acacataatg taaataatta taagttcaaa        60
     gctcgcgctc ttatagctgt taagctacaa atgttattgt aatcagctgc tccaaggcgc       120
     tgccaactta gataaattgt attgtactgg aagtcactgg aaacacacac acacacttga       180
     agttagagaa taaaacaagc cggcagcaac ttggtaacgc gaattaaaaa ttaataaatc       240
     acccccaatc tttataaaac cgatcattaa agtgcttttg atcataca                    288
//
ID   BEL-44_AA-I repbase;    DNA;    INV; 5946 BP.
XX
AC   AAGE02018502;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_AA_;
KW   BEL-44_AA-LTR; BEL-44_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5946
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018502; Positions   53132   59077.
XX
CC   Positions [4963-5535] - Integrase core
CC   'AATAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..5946
FT                 /product="BEL-44_AA-I_1p"
FT                 /translation="MMYRSDDMVKDRLEATLHSCQSCNRPDAAESDMVECS
FT                 MCKLWEHFGCAGVDERVKQPDQRYHCKVCRNKLGVISKQLPLSAANPPARS
FT                 TRASSKKSHASATSSVRAAMLQAQLKIAEDELQRRQQELLEQAEIKKKELE
FT                 ESERQLDEKKRIAEEERSLRERKLRDEKELKALQSQLRRESMERQHEIIRQ
FT                 AALNCSRGGSVADSIQKVSNWLVEHTGAGGLGGNQLGDKDNHSIVGPHSKK
FT                 VPTNPALNVDEVNQFDGETPLRQHQVLPPPPVHHSTPIHSVEPPLRVIQDQ
FT                 LNRFSIDPIHQQARRMASGVKRAISEPTVLTQQHIAARQVLGKELPVFSGD
FT                 PEDWPIFISSFQQSTIACGYTDTENLIRLQRCLRGRALETVKSRLLLPSGV
FT                 QSVIQTLRTLYGRPELLIHSLIEKIHHVAAPKHDRLDTLIDFGISVQNLVD
FT                 HLVAADQRDHLSNPMLLRELVEKLPGSMRLDWAAYKSRFQTANLETFGNFM
FT                 TNLMTAASEVTYDLPGSSNSYRVDKRKQKESASFHTHVLSASNPPPPVSEV
FT                 KPGKPCTCCARDGHRVADCPQFNLADVDERWKLVELKGLCRTCLNNHGKWP
FT                 CRSWRGCGIEGCRQKHHTLLHTSGSSENMNIVANHASLDEFPAPLFRILPV
FT                 VLFGNQSSQVVFAFIDEGSSYTLLEDSIADKIGVSGPTEALTLQWTGNVKR
FT                 TEHKSRIVQAEISAKTDSTKYKLVHARTVSSLLLPSQTLRYRELARRFPHL
FT                 RGLPVEEYELVQPKLLIGLDNLRLTVPLKLREGGQNDPIGAKCRLGWTIYG
FT                 CVPESTVIKSVVNFHVAAASNNDNEMNEQMRDYFSLENAGVNSLNVILESE
FT                 EEKRANRILSETTRRTGDGSRFETGLLWKMDNPNFPDSYPMAVRRLEALER
FT                 RLQMNPVLAENVKNQIKAYERKGYAHKATPIELTSVDASRVWYLPLGVVTS
FT                 PKKPNKVRLIWDAAAKVGETSFNSKLLKGPDLLIPLPKVLCQFRQFPIAVS
FT                 GDLMEMFHQIKIRFPDCQSQRFVFREKPTEYPQVYVMDVATFGSTCSPATA
FT                 QYVKNLNAQEFSAEYPRAAEAIVKRHYVDDYLDSFRTVDEAVETVNEVRMV
FT                 HGKGGFTLRQFLSNSREFLNAIGEIAEEESKNLSLERGEKLESVLGMKWLP
FT                 REDVFTYSLVLREDIRKLLEHDHTPTKREVVKVVMSLFDPLGLISFFLVHG
FT                 KVLIQDIWARGTDWDDVIPEDLHDRWLQWTSLFPKLDQLRIPRCYFRSAIP
FT                 ETPDCLQIHVFCDSSEAAYSSAAYLRLEINGVIEVALIGSKTKVAPLKTIS
FT                 IPRLELKAAVLGSRLLETLQSYHNLQLSRRFLWSDSSTVLSWIRSDHRRYN
FT                 KFVAFRIGEILTMTDPAEWRWVPTKSNVADQATKWNNGPQLSMENPWFRGP
FT                 SFLCAPEVSWPVQCPVTTTKEELRSNVVLYHDKPRLSILINLSRFNSWLKL
FT                 QRTVAFIFRYLGNCRRKMKKESLQLGVLTQEELKQAEELLWKIAQNEAFTE
FT                 EISILVQSQGSPENRHRIVHKSSHIYKLWPFLDDRGILRMRGRIGAATYAP
FT                 IETKFPAVLPKNHPITFLIVDWFHRRYNHANRETIVNEIRQKFEIPKLRSL
FT                 VGKVSKHCVWCRIVKAAPRAPAMAALPAMRLTPFIRTFTFVGLDYFGPVFV
FT                 RIGRSLAKRWVAVFTCLTIRAVHLEVVHSLNTESCIMAVRRFVARRGPPRE
FT                 FYTDNGTCFQSASRELKEEIERRNEALASTFTSAETSWKFIPPAAPHMGGV
FT                 WERLVRSVKVATSAVLDAARKPDDETLETVLLEGEAMINCRPLTFIPLESA
FT                 DQEALTPNHFLLGSSSGVKILPTAPVDNKAVLRSSWKLAQSITEEFWRRWI
FT                 KEYLPVIRRRCKWFEETKDLAVGDLVMVVSGSARNQWLRGRVEQVFPGKDG
FT                 RVRQALVRTATGVLRRPAVKLAVLDVASCSKPSSMSSGDPGNHQGLRAGV"
XX
SQ   Sequence 5946 BP; 1614 A; 1420 C; 1536 G; 1376 T; 0 other;
     attttcttta agaattttgt tggaatgatg taccggagtg acgacatggt gaaggatcga        60
     ctagaagcta cgctgcatag ttgccaatca tgtaaccgtc cggatgctgc ggaatcagac       120
     atggtagaat gcagtatgtg caagctatgg gagcattttg gctgcgcagg agtcgatgag       180
     agggttaaac aaccggatca acgataccac tgcaaggtat gtcgcaacaa gttgggagtg       240
     attagtaagc agctgccgct ctccgctgca aatccacctg ctagaagcac acgggcgagc       300
     tcgaagaaga gtcatgcgag tgcgacgtca agtgtacgtg cggcaatgct gcaggctcaa       360
     ttaaagatag cggaagatga actacagcgc cggcagcaag agttactaga gcaagcagag       420
     ataaagaaga aggaactgga ggaatcagag cgtcagttgg acgaaaagaa aaggatcgca       480
     gaagaagaac gaagtttgcg tgaacgaaaa ctgagggatg aaaaggagtt gaaggcgttg       540
     cagtcgcaat tgcgaagaga atcgatggaa aggcaacacg aaatcattcg gcaggcagcg       600
     ttgaattgca gtagaggtgg atcagttgcg gattccattc agaaggtatc gaattggttg       660
     gtcgagcata cgggcgctgg aggactagga ggaaatcagt tgggagataa agacaaccac       720
     agtatcgtcg gtccccactc taaaaaggtt cctactaacc cagcgctcaa tgtggatgaa       780
     gtgaaccaat tcgatggtga aactccgctt agacaacatc aagttctacc acctccgccc       840
     gtacaccatt caactccaat ccactctgtt gaaccaccat tacgtgtgat tcaggatcag       900
     ctgaaccgtt tctcgatcga ccccattcat cagcaagcca gacgcatggc aagtggtgtc       960
     aaacgggcaa tttcggaacc tacggtactc actcaacaac acatcgcggc acgacaagta      1020
     ctgggcaaag aattaccggt gtttagcgga gatcctgaag attggcccat cttcattagt      1080
     agtttccagc agtcaacgat cgcctgcggt tatacggaca cagagaacct tatccgcctt      1140
     cagcggtgtc tacggggccg tgctttagag acggtaaaga gccgtttgct actaccgtcc      1200
     ggggtgcagt ccgttataca gaccctgcgt acgctctatg ggcgacccga actgttaatc      1260
     cactcactca tcgaaaaaat acatcacgtt gcggcaccta aacacgaccg acttgacacg      1320
     ttgatcgatt ttggcatttc ggttcaaaac ctcgtggacc accttgttgc ggctgaccag      1380
     agggatcacc tatcgaatcc gatgctactt cgggaattgg tagaaaaact tccgggttcg      1440
     atgcgacttg actgggccgc gtacaaaagc cgttttcaga cagccaatct agagacgttt      1500
     ggtaacttca tgacaaattt gatgacagca gctagcgagg ttacatacga cctaccaggt      1560
     tccagcaatt cgtacagagt ggacaagcgg aagcaaaaag agtcggcatc atttcatacg      1620
     cacgtcctca gtgcgtccaa tcctccgcct cccgtttcgg aagtcaaacc aggtaagcct      1680
     tgtacatgtt gtgctcgaga cggtcatcgc gtagcagatt gtccacagtt caatttagcc      1740
     gacgtagacg agcgatggaa gcttgttgaa ctgaaggggc tgtgcagaac gtgccttaac      1800
     aaccatggca aatggccctg cagatcgtgg cgaggctgtg ggattgaagg atgtcgccaa      1860
     aagcatcaca cgctccttca cacatctgga agctcagaaa acatgaacat tgtggccaac      1920
     catgcatcac ttgatgagtt tcccgcgccg ctcttccgaa ttttgcctgt cgttcttttc      1980
     ggaaatcaaa gttcacaggt ggtgttcgca ttcatcgatg aaggctcgtc gtataccctt      2040
     ctagaggact ccattgccga caaaattggt gtgtcgggac ccacggaagc gctcaccctt      2100
     cagtggacgg gtaacgtaaa gcgaaccgaa cacaagtcca gaatagtcca agctgaaatt      2160
     agtgcgaaaa ccgattccac caagtacaaa ctggttcacg cccggaccgt tagtagcttg      2220
     ttgcttcctt cgcaaacgtt gaggtaccga gaactcgcac gaaggttccc ccatctgcga      2280
     ggcctcccag tagaagaata cgagcttgtt caaccgaagc tgctaattgg gttggataat      2340
     ctcaggctaa ccgttccact caagcttcgg gaagggggtc aaaacgaccc aattggcgcc      2400
     aaatgccgct tagggtggac tatctacgga tgtgttccag aatcgacagt tatcaaatca      2460
     gttgtcaatt tccacgttgc ggcggcatcc aacaacgaca acgagatgaa cgagcaaatg      2520
     cgcgactatt tctcgttgga gaatgctggt gttaattctc taaacgtgat tctcgagtcc      2580
     gaagaggaga agcgtgcgaa tcgaattctg tcagaaacta cacggcgaac tggagacgga      2640
     tcccggttcg aaactgggct gctgtggaag atggataacc cgaactttcc tgacagttac      2700
     cccatggcgg tacgacgact cgaagcacta gagcggaggc tccagatgaa cccagtgttg      2760
     gctgaaaatg taaaaaatca gattaaggcc tacgagcgta aaggctatgc tcacaaagcc      2820
     actcctatcg agttaacttc agtggacgca agccgcgtct ggtatcttcc ccttggagtt      2880
     gtaaccagcc caaagaaacc gaacaaagtc aggcttatct gggatgcggc ggccaaggtt      2940
     ggtgagactt cattcaactc gaaactactg aagggaccag atcttcttat tccactgccg      3000
     aaagttctct gtcagttccg gcagttcccc atcgctgtca gtggagatct gatggaaatg      3060
     tttcaccaga taaaaatccg gttccctgac tgccaatccc aacggttcgt gtttcgagag      3120
     aaacccactg aataccctca agtctacgtc atggacgtgg ccacgtttgg gtcgacatgt      3180
     tctccagcaa cggcccaata cgtgaagaat ctaaacgccc aagaattctc agctgagtat      3240
     ccccgtgctg ccgaagctat cgtcaaaagg cactacgtgg acgactactt ggacagcttc      3300
     agaaccgtcg acgaggcggt ggaaaccgtc aatgaagtta gaatggtaca tggtaaaggt      3360
     gggtttacgc tgcggcagtt tctgtccaac tcgcgtgagt tcctgaatgc catcggagaa      3420
     atagcagagg aggaaagtaa aaacctatct cttgaaaggg gagagaagct tgaatcggtt      3480
     ttggggatga aatggctgcc tagagaagac gtattcacct attccctagt gctgagagag      3540
     gatattcgga aacttctgga acacgatcat acgccaacga agcgtgaggt cgtcaaggtc      3600
     gttatgtcat tatttgatcc gctgggactg atttcgttct tcctggtcca tggcaaggtc      3660
     ctgatccagg acatctgggc cagaggaacg gactgggatg atgttattcc tgaagatttg      3720
     cacgaccggt ggttgcagtg gacgagtcta ttcccgaagt tagatcaact tcgcattcca      3780
     agatgttatt tcagatctgc tattcctgaa acccccgact gccttcaaat ccatgttttt      3840
     tgtgactcta gcgaagcagc atactccagt gcagcctact tgcgtctgga gataaatgga      3900
     gtaatcgaag ttgcactaat tggttcaaaa acgaaggtag cgccgttgaa gacaatatcc      3960
     atccctagac tcgaactgaa agccgctgtt cttgggtctc gtctgctgga aacccttcaa      4020
     tcttatcata atctacagct ttcacgaaga tttctttgga gcgattcgag tactgtactc      4080
     tcctggattc gctcggacca tcgccgatac aataaatttg tcgcctttcg cattggtgaa      4140
     attctaacga tgactgatcc cgctgaatgg aggtgggtgc ccactaaatc aaacgtcgct      4200
     gaccaagcta cgaagtggaa taatgggccg cagctctcga tggagaatcc ttggtttcgt      4260
     ggaccgagtt ttctgtgcgc accagaagtt tcgtggccag tacagtgtcc agttacaacg      4320
     acgaaggaag aactgcgctc aaatgtcgtc ctgtatcatg acaagccgcg gttgagtatt      4380
     ttgatcaatc tttctcgatt caactcgtgg ttgaaacttc agcgaacggt ggcattcatt      4440
     ttccgttatc tgggcaactg ccgccgaaaa atgaaaaagg aaagtctgca actgggagtc      4500
     ctcacccaag aggaactaaa acaagcagag gaactgctgt ggaaaatcgc tcagaacgaa      4560
     gcctttactg aagaaatatc aattctggta caatcacagg gatcgccgga aaaccgccac      4620
     cgtatcgttc acaaatcaag tcacatctac aagttatggc cgttcttaga cgatagaggg      4680
     atcttgagga tgcgtggcag aattggcgca gctacttacg caccaattga aaccaaattt      4740
     cctgcagtcc tgcctaagaa tcacccaata actttcctca ttgtcgattg gtttcatcgt      4800
     cgatataatc acgccaacag agagactatc gtcaatgaga ttaggcagaa gtttgaaatc      4860
     ccgaagttga gatctttggt cggaaaggtc tcaaagcact gcgtctggtg tcgcatcgtt      4920
     aaagcggctc cgcgagcgcc agccatggcc gcactgccag caatgcgtct aacccctttc      4980
     atccgaactt tcaccttcgt tggactcgac tatttcgggc cagtttttgt aaggattggt      5040
     agaagcctcg ccaaacggtg ggtcgccgtt ttcacctgcc ttacgattag ggctgtgcat      5100
     ttggaagtag tgcactctct caatacggaa tcttgcatca tggctgtgcg tcgtttcgta      5160
     gcccgccgtg gtcctccaag ggaattctac accgacaacg ggacgtgttt ccaaagtgcg      5220
     agtcgagagt tgaaagagga aatcgagcgt agaaatgaag ccttagcatc gaccttcact      5280
     agtgcggaga ctagttggaa attcattccg cctgctgccc cacacatggg cggagtatgg      5340
     gagaggctcg tccggtcggt caaagtagcg actagtgcag tcctggacgc tgctcgaaaa      5400
     ccagatgatg agactctgga gacggtcctt ctagaaggag aggcgatgat caactgcagg      5460
     ccgctcacct ttataccact tgagtcggct gatcaagaag cactgacgcc taatcatttt      5520
     ttgctgggca gttcctctgg agtcaaaatt ctacctacag ctccggtaga caacaaggca      5580
     gtactaagaa gcagctggaa actggcacaa tctatcacgg aggaattctg gcggcggtgg      5640
     ataaaagaat atctaccggt gatcagacgt aggtgcaaat ggttcgaaga aaccaaggac      5700
     ctcgcagtag gtgaccttgt aatggtggtc agtggttcgg caagaaacca atggttacgg      5760
     ggacgagtag agcaagtatt ccctggcaag gacgggagag tacgccaagc attggttcgc      5820
     actgcaacgg gagttctccg aagaccagcc gttaaattag ctgttttaga cgtcgcgagc      5880
     tgtagtaaac ctagttcgat gtcttccgga gatccaggaa atcaccaagg tttacgggcg      5940
     ggggta                                                                 5946
//
ID   BEL-44_AA-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   AAGE02018502;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_AA_;
KW   BEL-44_AA-I; BEL-44_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-491
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018502; Positions   52641   53131.
XX
SQ   Sequence 491 BP; 170 A; 99 C; 84 G; 138 T; 0 other;
     tgtggcgacg gacccctcgt tgcggcgaag cgtgagtgac gctttgcttt agagcgtaga        60
     tggtagtagc tgtcaacgac tatcacacat gcaattaaga gaaaaacatc agccacaagt       120
     gatcgagatt gaaattccct taaaagtaat taaaattagc tcctaaaagt aacgattatt       180
     gaactattga acattaattg aactagaact attcgtgcat atcctattat acaaaagtaa       240
     gcttattact aaaaatctag cctaatacag tgaattaatg taatcttaac ctatatctag       300
     cctacaccta catcgtgaaa ttcgtcgact caccacgatc gttacactat cggttcacca       360
     aaattgtgag taagctattt gaaatttgat ccttaaaata aatactaaat tgtttcagct       420
     taaagctaac agcatcaaaa actgcgtttg ctccttgaga gttggaaaac ccattcgcgt       480
     acgaccgaac a                                                            491
//
ID   BEL-44_AnFu-I repbase;    DNA;    INV; 5410 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5410
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 691-691 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..5376
FT                 /product="BEL-44_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MPAQTILASRRTILLATLVRHEQFLREFDPERDSNAV
FT                 EIRLDKVQQLVKDLENIQQQLEDASTTVEESDHNDALRQDFEPRLIYLEGE
FT                 LKAKMREISRNEAAQQRTGNSSLKGIKLPTITLPEFNGDYMQWLTFRDTFE
FT                 CLIHDNTDLPAIQKFHYLRAALKGEAAQVIEAITISAANYEQAWKMITARY
FT                 SNEYLLKKRHLQAMFSMKPIKHEGALTLHQLVDEFERHKNTLHHLGEDTDA
FT                 WSSILEHLLCTKLPTITLRDWEEHASNDENPSYESLVIFLQRRMRVLETLL
FT                 VNKPDTSLSEQTTHTRRQNFPRATSFATADREPHSCPVCNMPHAVMRCQRF
FT                 LAMDPAQRYRSALDARICLNCLRYNHRARDCSSQYKCRHCNLAHHTLLHSQ
FT                 HLSHGTFPTAPNTPAARNASINHNTSDHLANTQEHYVAAHASKQTYDHVFL
FT                 QTAVVRIVDAHGIVHPARALLDSGSQPDLMSRRLAHRLALKYDATNIALIG
FT                 AGNSSTPVTKSVRANVSSRTSPYELSADFLIVENLIGNLPAHDVHANDWQI
FT                 PSNFMLADPHFHKSAPLDLILGARHYHEFFQSGAQHKISSGLPVLIESVFG
FT                 WVVSGSASSLNPADGTSNAASIVCMSTLEESLERFWNVEELQVRDCYSPEE
FT                 QLCETVFKETTQRDKSGRYIVRLPRQPDFNVKLGQSKATALRRFELLERRL
FT                 ERDPQLKADYHQFMKEYLELGHMSPINVSREEEQAYYLPHHPVFKASSSTT
FT                 KVRVVFDGSAKMNSGYSLNEILCTGPIVQDDLLDIILRFRTYKVALVGDIA
FT                 KMYRQILLHPDDRRLVRIFFRFSPQAPMQIFELNTVTYGLSPSSFLATRTL
FT                 LQLADDEGAHYSNAQAALKRNFYVDDFIGGANTVEDTFRLRQELSDLLAKG
FT                 GFELRKWTSNHLGVLSGLSADQIGTQSSLQFIPNETVKTLGISWKPESDEL
FT                 CFDSNVCVESTSSTKRSILSCIAKMYDPLGLIAPVLVRAKLLMQELWLLKS
FT                 GWDDPVPEQIYNKWTTISDEWQSLSTYKTNRHVLLPNSQVELHTFTDASEA
FT                 AYGACIYARCKNAEGEIRISLLASKSRVAPLKRVTLPRLELNAAVLGAHLQ
FT                 HRVQKAMQIDSVESFFWSDSTVTLKWIASPPNTWKTFVANRVAEVQRYSHP
FT                 RQWRHVPGSSNPADLVSRGMSAANFLKSRQWHSGPDWLALPSSSWPSSNPD
FT                 SIDGVDLEIRQVSAGIATTSTHIWFDISSSFSRLVRIIGYCVRFARNTQQK
FT                 ARTQPSSNHTVAPLSITKEHLEDAKTVLCRLAQQDAFSPEIKHMKKGEALL
FT                 KQSSLRKLSPFIDEKGIIRVGGRLKLSQLPYQSKHPVVLPKQHKFTRLVAE
FT                 HYHEQLMHAGGRLLLSQMREQYWPLDGRRLVKGIVRNCFRCIRQDPALAQQ
FT                 PIGQLPSSRITPSRPFSITGVDYAGPFYLKPAHRRAAATKSYLCVFVCFTT
FT                 KAVHLELVGDLTTAGFLAALRRFASRRGLPSHIHSDNGKNFEGAERELKEL
FT                 FEMFNDEQQRNVIATYCADKGIAWHFTPPKAPNFGGLWEAAVKTAKRHLYR
FT                 HLGGTRLSYEGYCTVLQQIEAAMNSRPLLPLSDDPDELAALTPAHFLIGTS
FT                 MHAVPEPDYTHLKSCTLDDLQKWQLLVQRFWKHWATEYLQEMQKSYTRPGS
FT                 NNNNILTGRLVILMDESLPCTRWPLARIVHVPPRGRSDRASGNTEDREGDN
FT                 NATDHESLHLTDAHRQRGQHVLIG"
XX
SQ   Sequence 5410 BP; 1475 A; 1385 C; 1261 G; 1288 T; 1 other;
     ttggtgccgt gaccaggatt tctacaacct aaatactcgc gattttttcg ataagtgaac        60
     gtaatacacg cgcgcgcatt tcggcagtag ctcgcatttc atcacactac actcgagtac       120
     gcacttttcg caccttgtac caaaatgcct gctcaaacaa ttttggcttc acgaaggacg       180
     attttgctcg ctactttggt gcgacacgaa cagtttttgc gggaatttga tcccgagcga       240
     gactccaatg ccgtggaaat tcgacttgat aaagtccagc agttggtaaa ggatttggag       300
     aatattcaac aacagctgga agatgcatca accactgttg aagaatccga tcataacgac       360
     gcgttgaggc aggatttcga gccacgctta atatatctgg aaggcgaatt gaaggcgaaa       420
     atgagggaaa tttcgcgcaa tgaagccgcg cagcaaagga caggcaacag ctccttaaag       480
     gggataaaat tgcccaccat cacactcccg gaattcaatg gcgattacat gcagtggttg       540
     acctttaggg acactttcga gtgtctcata cacgacaaca cagatttgcc cgccatacaa       600
     aagtttcatt acttgcgcgc agcgttgaag ggtgaagcgg cgcaagtaat cgaggcaatt       660
     acaatcagtg cggcaaatta tgagcaagct tggaaaatga tcactgcaag atattccaat       720
     gaatatttgc taaaaaagcg tcatctgcag gccatgttta gcatgaagcc gatcaagcac       780
     gaaggtgcgt tgaccctgca tcagctggtt gacgaatttg aacgccacaa aaatacgctc       840
     caccacttgg gtgaagatac tgacgcttgg agtagtatct tggagcattt gttatgcacc       900
     aagctgccaa caatcacgct acgtgattgg gaagagcacg cttccaatga cgaaaatcca       960
     agctacgaga gccttgtaat tttcttacaa cgtcgaatga gagtactcga aacgttgtta      1020
     gtaaacaaac ccgatacgtc actctctgag cagaccacac acacacgacg tcaaaatttc      1080
     ccgcgcgcga cgagctttgc gaccgccgat agagaacctc acagttgccc tgtatgcaat      1140
     atgcctcacg ccgttatgag atgccagcga ttccttgcta tggatcctgc acaacgatac      1200
     cgatcagctt tagacgcacg aatttgccta aattgcttgc ggtacaatca ccgagcgcgt      1260
     gattgctcct cgcaatacaa gtgtcgacac tgcaatttag cgcaccacac actattacac      1320
     tcacaacacc tttcacacgg cacatttccc actgcgccca acacgccagc tgcgcgaaat      1380
     gcttccataa atcacaacac tagcgatcac ttggcgaaca cacaagaaca ctacgtagca      1440
     gcacacgcga gcaagcaaac gtacgatcac gtttttctcc aaactgccgt agttcggata      1500
     gttgacgcgc acggtatcgt tcatcctgcg cgagcacttt tagatagtgg ctctcagcct      1560
     gatcttatga gccgccggct tgctcatagg ttagcgctta agtacgatgc gactaacatt      1620
     gcccttatcg gggcggggaa ttcgtccaca ccagtgacaa aatcggtgcg tgccaacgtt      1680
     tcatcacgaa cgagtccgta tgagttgagc gctgattttt tgatcgtgga aaacttgata      1740
     gggaatttgc cagcacatga cgtgcacgcg aatgattggc aaataccctc gaattttatg      1800
     cttgctgacc cccattttca taagtcggca ccgctcgatc tcatcctcgg tgcccggcat      1860
     taccatgaat tcttccaaag cggggcacaa cataaaatct cgtcaggcct tcctgtcctc      1920
     atcgaaagtg tgttcggatg ggtcgtgagc ggctcagcat cgtccttgaa tcctgctgac      1980
     ggaacctcta atgcagcttc catcgtttgt atgagcactc tagaggaatc gctcgaacga      2040
     ttctggaatg tggaagagtt gcaggttaga gattgctact cacctgaaga acaactatgc      2100
     gaaacagttt ttaaggaaac cacccaacgt gacaaatcgg gtcggtatat cgtacgttta      2160
     cctcggcagc ctgactttaa tgtaaagctc ggtcagtcca aggcaacagc attgagacgc      2220
     ttcgagttgc tggaaaggag gctggaacgc gatccacaac taaaggcgga ctatcaccaa      2280
     tttatgaagg agtatttgga gctcggccat atgtcgccga taaatgtcag tagagaagag      2340
     gaacaggcct actacttacc gcatcatccc gtttttaaag catccagctc aacaacgaaa      2400
     gtgagagtag tgttcgacgg atctgcaaaa atgaattcgg gttattcatt aaacgaaata      2460
     ttatgcactg gtcctatagt gcaagacgat ttgctggata taatcttacg attccgtaca      2520
     tacaaggttg cgcttgtggg tgacatagca aaaatgtatc gacaaatctt gttgcatcct      2580
     gatgatcgtc gattggttcg aatctttttc cgtttttcgc cacaagcccc gatgcagatt      2640
     ttcgaactca acaccgtcac gtacggactt tcgccatcat cattcttagc tacgcgcacc      2700
     ttgcttcagc tcgcagatga tgaaggtgca cactattcga atgcacaagc tgccctgaaa      2760
     cgaaactttt atgtagatga tttcattggt ggtgccaaca cggtagaaga tactttccgt      2820
     cttcgtcagg agctatcgga tctacttgcg aaaggtggat tcgagttacg caagtggaca      2880
     tcgaatcatc taggcgttct cagcggttta agtgctgatc aaatcggcac ccagtcatcg      2940
     ttgcagttca ttcccaatga aacggtgaaa acactcggca tctcctggaa accagaatct      3000
     gatgagctgt gctttgattc gaacgtttgt gttgaatcaa catcctcaac gaagcgatcc      3060
     atactgtcat gcatcgcgaa gatgtatgac ccgcttggac tgattgcacc tgtattggtc      3120
     cgtgcaaagc tactgatgca agaattatgg ctgctgaaat ccggctggga tgatcccgtt      3180
     cccgagcaga tctacaacaa atggacaacg attagtgatg aatggcaatc tttatctacg      3240
     tataaaacta atcgtcatgt tcttttacct aattcacaag tagaactcca cacgttcacc      3300
     gacgcctccg aagcagctta cggagcctgt atctacgcgc gttgcaagaa cgcggaagga      3360
     gaaatacgga tcagcttact ggcgtcgaag tcccgagtag cacctcttaa acgcgtcaca      3420
     ctgccgagac tcgaactcaa cgcagctgtt ttgggcgccc atctccagca ccgggtccag      3480
     aaggcgatgc agatcgatag cgtcgagtcc ttcttctggt ctgattcaac tgtaacgctg      3540
     aaatggatag catctccacc caatacatgg aagacattcg tggcgaaccg tgtcgctgaa      3600
     gtgcagcgct attctcatcc gcgacaatgg cgacacgttc ctggttccag caaccctgcc      3660
     gatttggtct ctcgcggcat gtcggcagcg aatttcctta agagtcgaca gtggcactcc      3720
     ggcccggatt ggctagctct tccttcatcg tcatggccca gctcgaatcc tgattccatc      3780
     gacggagtgg atctagaaat ccgtcaggtg agtgcaggta tcgctacaac ctcgactcat      3840
     atatggttcg atatttcgtc atcgttttct aggttggtgc gtataattgg gtattgcgta      3900
     cgttttgcgc gtaatactca acagaaggcg cgcacacaac catcttcaaa ccacaccgta      3960
     gcaccactta gcatcacgaa agaacactta gaagacgcca aaactgtgct ttgcagacta      4020
     gcacaacaag atgccttctc tcccgaaatc aagcacatga aaaagggaga agctttactg      4080
     aagcagtcat ctttacgtaa actaagcccc ttcatcgacg agaagggcat aatacgagtg      4140
     ggaggacgat taaaactgtc gcagttgccg taccaatcga aacatcccgt ggtgcttcct      4200
     aaacagcata agtttacacg tctcgtagct gaacattacc acgaacagct tatgcatgct      4260
     ggcggaagac ttctactatc ccagatgaga gagcagtatt ggccactaga cggacgtcga      4320
     ttagtgaaag gcatcgtgcg gaattgcttt cgatgtattc gccaggatcc cgcactggca      4380
     cagcaaccta ttggtcaact tccctcatca cgcattacac ccagccggcc tttctccatc      4440
     acgggagtgg actacgccgg accgttctat ttaaagcctg cgcatcgcag agccgcagcg      4500
     actaagagct acctgtgcgt atttgtttgt ttcaccacga aggctgttca tcttgaactc      4560
     gtgggagacc tcacaacagc aggattctta gccgcactac gacgtttcgc ttcacgacgc      4620
     ggtctaccat cgcacatcca ttccgataat ggtaaaaact ttgaaggagc cgaacgcgag      4680
     ctcaaggagc tttttgagat gttcaacgac gagcagcagc ggaacgtcat tgctacttat      4740
     tgtgcggaca agggcatcgc atggcacttc accccmccga aagctccaaa cttcggtggc      4800
     ttatgggaag cagcagtcaa aaccgcgaag cgacatctct accggcacct aggcggcacg      4860
     aggctgtcct acgaaggtta ctgcaccgtg cttcaacaaa tagaggcagc aatgaattcc      4920
     aggccattat taccactctc cgatgatccc gacgaactag cggcactaac accggcacac      4980
     tttttaatcg gcacatcgat gcatgctgtt cccgagccgg actatactca cctgaaatcg      5040
     tgcaccctgg atgatcttca gaaatggcag ctgctagtgc aacgattttg gaagcattgg      5100
     gccaccgagt atctacaaga aatgcaaaag agttacacac ggccgggtag caacaacaac      5160
     aacatactta caggcaggtt agtgatattg atggacgaat cgctaccttg tactcgttgg      5220
     cctctagcac ggatcgtaca tgttccaccc cggggaagat cagatcgtgc gagtggtaac      5280
     actgaagacc gcgaagggga taataacgcg accgatcacg aaagtttgca tcttaccgat      5340
     gcccaccgac aaagaggaca acacgtgctg atcggataac tgttttgacc tccgtcaagg      5400
     cgggggagga                                                             5410
//
ID   BEL-44_AnFu-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-221
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 746-746 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 221 BP; 74 A; 39 C; 50 G; 58 T; 0 other;
     tgttggaaca gtatttacat ttgatgaatc atccgacatg cgatttgtcg gaggagcgga        60
     atcactctcg gatagtgatg ggcggaactt aaagttccgt aaatagtcaa taaatagggg       120
     gcgaaaaggc tttttgcgct ctctccattc tttaaaagcg aaacaactgg ctggtaatta       180
     ttaacagaaa acttatccga aataaaatcc gcgaaagaac a                           221
//
ID   BEL-44_CQ-I repbase;    DNA;    INV; 5297 BP.
XX
AC   AAWU01003709;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_CQ_;
KW   BEL-44_CQ-LTR; BEL-44_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5297
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 241-241 (2011).
XX
DR   Genome; AAWU01003709; Positions   19516   24812.
XX
CC   'ACAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1097..3919
FT                 /product="BEL-44_CQ-I_2p"
FT                 /translation="MDVAGRRELVLSKKLCFNCLKPLHTANKCPSKSTCRT
FT                 PDCKQRHHTTLCQQRQQHSQEPEKADRDHPPRQPEETEEASSVSANAAQAK
FT                 ATKHEPSSVALLPTVIANLEGKDGKLHQVRCLVDSGSQASLITEACVKRIG
FT                 LKRTNASLEVTGVNGEIVGTTAGAVTLVMSSRFDGETKLTTQAYVLGRLTA
FT                 TLPNQRFNVADLPFLEGLELADPSFNSPGEMDVILGADVFLSILQAGQVKN
FT                 RQGIPVAQRSIFGWMVSGKISQPCRTSSHHAVLNVAQEFDIDRTLRLFWED
FT                 QEIPEGKLLTTEEKRVIEHFDSTLTRSEKDGHFIVRLPLDDSKCKLGESLN
FT                 AATKRLRAMERKFQRDPNFKERYVAFMREYQKLGHMEEIPETEVQADCTKS
FT                 YYLPHHGVVKEDSSTTKLRVVFDGSCATTTGVSLNDLLLNAPNVNADLFDV
FT                 LLRFRTYPVVFTADVEKMYRQVWVHRDDTDYQRIVWRESPDEPIRHFRLLT
FT                 VTYGLKNSGFLAMSALKKAAEDFEQHYPGAAERIKEHTYVDDLVSGADLAA
FT                 EAARLVEQIDEIAGKAGFTLRKWCSNVDETLLPLADVKNAAVPIQFPDERN
FT                 AIKALGIHWLPQEDAFTFKVNMKTDGPNTKHQLLSDSAKLFDPIGWLAPVT
FT                 VRAKILFQQCWLYDMNWHDPLPAAVEQMWIEFKENLPRLEQVKIPRWMSSY
FT                 NGHVELHGFSDASEEAYSAVVYIRTFNEIDGAYVNLVAAKTKVAPIRQVSL
FT                 PRLELNGAWLLARLMKRVAKAFERFKVEMFAYTDSTIVLHQLAFHPRKLDT
FT                 YVANRTASILEVLPRSRWFHVKSEENPADCASRGISPAELVNHPLWWFGPP
FT                 WLKAHASTWKHEMPDEEFDEATLEVRKKFRTFNIVVRLPKTTYEEEKQILD
FT                 QILFTAWSVPTAVTGQPVPLQPATGKQGEAFRFDRPG"
FT   CDS           3669..5270
FT                 /product="BEL-44_CQ-I_3p"
FT                 /translation="MRQPGSMRCLTRNSTKQRWRYARNSERSTLWSDYQKP
FT                 RTKRRSRFLIRFSSLLGACRQLSRVNRFLYNLRPGNKEKRSGSIAPAELHS
FT                 ARMQFVRLAQHDVFQKEIKTLAAGREVSPKSKIANLYPFLDGDGTLRIGGR
FT                 LQQSSLPFEVKHPVILPKDHRFTKLLVEELHSQNCHAGPSLLTATVNQRYW
FT                 IQGCQSVIKQVIHNCVRCRRLKAKTAQQLMGSLPAARVTACRPFTHVGVDY
FT                 AGPIQVRCSNTRGTRSMKGYIVVFVCLSTKAVHLEAVSDLTSQGFISALKR
FT                 MIARRGYCCEIWSDNGTNLVGADRLLQEIYEAIMAHSKEAEQFLCNLGIKW
FT                 KFIPPASPHQGGIWEAAVKSAKSLLRPVVGNEKLTFEELSTVLCQIEACLN
FT                 SRPLCPLSTSPDSLEALTPGHVLVGQPLNMIPEPDVMHLKMNQLDRWQKMQ
FT                 RYSTEFWNRWRDEYIATLQPRGKWRASEENIKPGQLVLVKNDNAPPSAWEL
FT                 ARVVAVHPDRAGLVRNVTLRRGKHEYQRSVQKICPLPN"
XX
SQ   Sequence 5297 BP; 1265 A; 1512 C; 1548 G; 972 T; 0 other;
     ttggtccttc gcggcgcgga tatggatcaa gagcggttga agtccctcac cagcaagcga        60
     gaagtcatcc tcgcgaaggt gaagtgggag ctgtccgtcg cgaaagccat caaaactcgc       120
     aacccgtccc tcggcgaagt ggcggaacgg cgggacaagt tgaccggcct cgctcagtgt       180
     tttgacgacg tacagactga gatcgaggag gccacgccga acctggagga ggtggtcacg       240
     gtgttcaacc accgaatcct gttcgaggac gcctacttcc agatcaagga catctacacg       300
     gagtatttgg accagcatgt ggaggagccg gaagttaggc cggaagaccg gcaggacgat       360
     ctgcgagacg ccgtcaaggc gctccttgaa tcccagcagc agatgctgct cgcgcagtgc       420
     caaaaaccac caccacaaac gctggcgcta gcggcgggga gccacgtatc gaacccggta       480
     ccccataacg tcgtcaagct gccacaaatc gacattccga agttcaccgg ggagcgtaag       540
     cactggcgct catttaagga cctcttcgtg tgcacaattc acagccgtac cgacctgcgg       600
     gattcggtaa agatgcagta cctgttctcc tacctggacg gtgaagcgaa ggggaaagtc       660
     gactcgttct cgatcaacga tggcaactac cgtgaggcgt gggacgcact cgtgacctac       720
     tatgacaaac acaaatacac ggtgtttgcc ctcgtccggg agtttgtcga ccagcaacca       780
     gtcaccaacg ccaaggaatt gaagcacctc gtagccacat ccgacgacgt cgtccgccag       840
     ttgaaggccc taggacggga gtacgagtca cgggatccgg gggacttttg caaacttcca       900
     agagttcctg gagcagcggt gtgacgcgtt ggagacgtgc tcggcgttca gcaagaagac       960
     gggccctgaa gtttcgaaga aggagtctca aaagccaacc caaagaaaag tgcaagcgtt      1020
     tcacacgagc gctgctgtga gctgcgcgaa atgcagtaaa gatcacccga cgtatcactg      1080
     cgacgtgttc aaggccatgg acgtggccgg acggcgggag ctagtgctct ccaaaaagct      1140
     gtgcttcaac tgtctgaagc cgctccacac ggcgaacaag tgtccgtcga agtcaacgtg      1200
     ccgcacgccc gattgtaagc agcgacatca cacgacgctg tgccagcagc ggcagcagca      1260
     cagtcaggaa ccggagaagg ctgaccgcga ccatcctcca cgccaacccg aagagacgga      1320
     ggaggcctcg tcggtctcgg ccaacgcagc tcaagccaag gcgaccaagc acgaaccgtc      1380
     gtcggtggca ctgctgccca cggtgatcgc caacttggaa gggaaggatg ggaagttgca      1440
     ccaggtgcga tgtctcgtcg acagcggatc acaagcgtcg ctgattacgg aggcatgtgt      1500
     caagcgcatt gggctgaagc gcacgaacgc ctccctggaa gtcaccggag tgaacggaga      1560
     aatcgtcggc accacggccg gtgcagtcac gctggtgatg tcttcgcgtt tcgacggaga      1620
     gaccaagctc accacgcaag cctacgtgtt gggaaggctg acggcaaccc tgcccaacca      1680
     gcgcttcaac gtagcagacc tgcccttcct ggaggggctg gagttagcgg atccgagctt      1740
     caacagtcca ggcgagatgg acgttattct cggagcagat gtcttcctgt ccatcctaca      1800
     agccggacag gtcaagaatc gccaaggaat ccccgtggcc cagcgttcca tctttgggtg      1860
     gatggtatcg gggaagatct cccagccgtg tcgcacaagc agtcaccatg cagttctcaa      1920
     cgtcgcccag gagtttgaca tcgaccgcac cttgcggttg ttctgggagg accaggagat      1980
     ccctgaaggc aagctgctga caaccgagga gaaaagggtc atcgaacact tcgattcgac      2040
     tctcacgcgc tcagagaagg atggccactt tatcgtcaga ctccccctcg acgattcaaa      2100
     gtgcaaactg ggagaatcgc tcaacgcagc aaccaagcgc ctgcgggcca tggaacgcaa      2160
     gttccaacgg gatcccaact tcaaggaacg gtacgttgcc ttcatgcgcg agtaccagaa      2220
     gctgggccac atggaggaaa ttcccgagac ggaggttcaa gcagactgca ccaagtccta      2280
     ctacctccca caccacgggg tcgtgaagga ggacagctcc acgaccaaac tccgggtcgt      2340
     tttcgacggc tcttgcgcca ccacgaccgg ggtctcacta aacgacctac tcttgaacgc      2400
     acccaacgtc aacgcagatc tcttcgatgt gctgctgcga ttcagaacct acccggtagt      2460
     gttcacggcg gatgttgaaa aaatgtaccg ccaggtctgg gtgcaccgtg acgacacgga      2520
     ctatcagcgc atcgtctgga gagagtcacc cgacgaaccg atccggcact ttcgtctgct      2580
     gaccgtaacg tacgggctga agaactccgg gttcctggcg atgtcagcgc tcaagaaagc      2640
     agcagaggac ttcgagcagc attaccctgg ggctgctgag cggatcaagg aacacacgta      2700
     cgtggacgac ctggtctccg gtgcagattt ggcggcagaa gcagcgcggt tggtggagca      2760
     gatcgacgag attgctggta aggccggctt cactctccgc aagtggtgct ccaacgtgga      2820
     cgaaacgctt ctaccactcg ccgacgtgaa gaacgcagcg gtgccaatcc agttccccga      2880
     cgaacgcaac gccatcaagg cgctggggat ccactggttg ccgcaagagg atgcgttcac      2940
     cttcaaggtc aacatgaaaa cggatggacc aaacacgaag caccagttgc tgtccgactc      3000
     ggcgaagctg ttcgacccca tcggatggct ggcgccagtg acagtgcgag cgaagatcct      3060
     gtttcaacag tgttggctgt acgacatgaa ttggcacgac ccgctgcccg ccgcggtcga      3120
     gcaaatgtgg atcgagttta aggagaacct gccgcgcctg gagcaggtca agataccaag      3180
     gtggatgtcg agctacaatg gacacgtcga gctacacggc ttctcggatg cctccgagga      3240
     agcctactct gccgtcgtct acatccgaac gttcaacgag attgacggtg cctacgtcaa      3300
     cctagtcgcg gccaaaacga aggtcgcacc gatccggcag gtttcactac ctcggctgga      3360
     gttgaacgga gcgtggctac tagcaaggtt gatgaaacgg gtggccaagg cgttcgagcg      3420
     gttcaaggtg gagatgtttg cgtacacaga ttcaacaatc gttctgcacc aacttgcttt      3480
     ccacccacgc aaacttgaca cgtacgtggc caacagaacg gcatcgatcc tggaagtact      3540
     gccacggtct cgctggttcc acgtcaagtc agaagagaat ccagccgact gtgcctcccg      3600
     tggaatctca ccggcggaac tggtcaatca tcccttgtgg tggttcggcc cgccgtggct      3660
     gaaggcacat gcgtcaacct ggaagcatga gatgcctgac gaggaattcg acgaagcaac      3720
     gctggaggta cgcaagaaat tccgaacgtt caacattgtg gtcagactac caaaaaccac      3780
     gtacgaagag gagaagcaga ttcttgatca gattctcttc actgcttgga gcgtgccgac      3840
     agctgtcacg ggtcaaccgg ttcctctaca acctgcgacc gggaaacaag gagaagcgtt      3900
     ccggttcgat cgccccggct gagctgcaca gcgcgcgaat gcagttcgta aggctggctc      3960
     agcacgacgt cttccagaag gagatcaaaa ccctcgccgc gggtcgcgag gtttcaccga      4020
     agtcgaagat tgccaacctg tacccgttct tggacggcga tggaacgctc cgaattggcg      4080
     gtcgtttgca gcagtcgtcc ctaccgttcg aggtcaagca cccggtgatt cttcccaagg      4140
     atcatcgatt cacgaagctg ctggtggagg agctccactc gcagaactgc cacgccggac      4200
     cgtcgctctt gactgctacg gtcaaccaac gctattggat tcaaggctgc caatcggtaa      4260
     tcaagcaggt gattcacaac tgtgtgaggt gccgtcgtct gaaggccaag acggcgcagc      4320
     agctgatggg cagcctccct gcagctcgag tcacggcgtg ccggccattc actcacgtgg      4380
     gggtggatta cgcagggccc atacaagtac gctgcagcaa cacccgagga acacgctcta      4440
     tgaaggggta catcgtcgtg tttgtgtgcc tctcaaccaa ggccgtacac ctggaggcgg      4500
     tcagcgacct cacgtcgcag ggattcattt ccgcactcaa gaggatgatc gcacgtcgcg      4560
     gttattgttg cgaaatctgg tcggacaacg gcactaatct ggttggtgcg gaccgactgc      4620
     tgcaggagat ctacgaagcg attatggcac acagcaagga agccgagcaa ttcctctgca      4680
     atctcggcat caagtggaag tttattccgc cggccagccc tcaccagggt ggcatctggg      4740
     aagcagccgt caaaagtgcc aagagcctgc tgcgtccagt cgttgggaac gaaaaactga      4800
     cgttcgaaga actcagtacg gtgctctgcc aaatcgaggc ctgcttgaat tcgagaccac      4860
     tctgcccgtt gtcaacatca ccggacagtc tcgaagcttt gacgccgggg cacgttcttg      4920
     tgggccagcc gttgaacatg attccagagc ccgacgtcat gcacttgaag atgaatcagc      4980
     tcgaccgttg gcagaagatg cagcgctact ccaccgagtt ttggaaccgc tggcgtgacg      5040
     aatacatcgc gacgttgcag ccgagaggaa agtggcgcgc aagtgaggag aacatcaagc      5100
     cggggcaact ggtcctggtc aagaatgaca acgctccacc atccgcctgg gagctggccc      5160
     gtgtcgtagc agttcatccg gatcgagcag gactggttcg gaacgtgacg ctgcgtcgtg      5220
     ggaagcacga gtaccaacgc tcggtgcaga agatctgtcc gcttccgaat tgagacgctg      5280
     tctcaaggcg gggagga                                                     5297
//
ID   BEL-44_CQ-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   AAWU01003709;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_CQ_;
KW   BEL-44_CQ-I; BEL-44_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-272
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 242-242 (2011).
XX
DR   Genome; AAWU01003709; Positions   19244   19515.
XX
SQ   Sequence 272 BP; 69 A; 67 C; 70 G; 66 T; 0 other;
     tgtttgcaga agaaaagtga cccgcccctt gggctcggct ggtctaccaa acgcaaacgt        60
     cattgacgcc gttgcgcgct ttttgccgtt gcggcaggag aaagggagga agaagaataa       120
     aagttagtca ggaaggaggc ttttcagaga aagacgtctt tttttatttt ctcgtgcgcg       180
     aagtcgctaa tccgccggaa agtcttcctt caatcccgcg ccactgtttc cgacgacgga       240
     acttggccaa tctacgatac agtccattaa ca                                     272
//
ID   BEL-44_DTa-I repbase;    DNA;    INV; 3961 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   30-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3961
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5688-5688 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identity to consensus.
XX
SQ   Sequence 3961 BP; 1112 A; 984 C; 781 G; 1071 T; 13 other;
     tttttggcgc ccaacgtggg gcagtgatta attaattaat tggcaattgt cgaaccgcac        60
     gtctacatac atatgtgtgt tcacatacac cacatataac tggagcacgt gtttgatcaa       120
     ctttcggctg tccgcgctat wtcacawcac attcgcaatc gtcgtmggag tgtgcagctt       180
     gtgccactca tcccaaccat cgtaacaatc gtcgaaggca tcctagctga gccgttcatc       240
     ttatcgtcgt tacactccat caatatcgtc gccgccggct caacgccccg gaaccagcta       300
     aggctacggc atcatckgcc aacatcgcct aatcatcgca aggaacgctt ctcggagggt       360
     tacgccacgc gcgtcmaacc taacctcgcc tcctmacctc aacgtcgctt ctacacattc       420
     gtccatcgat atctacattc tacagtagat ctacacacat tawcaagtct gtatacacat       480
     ctacaacttt acttcgcaag acattcggaa aattatttag tcaacctcca ctattgccca       540
     attagtgagt ctttatttcc atccttaata aacatttcgt caacaatcga ctaaatctac       600
     cttggctcaa taatttcaaa atgtctgaca tagaacaatt aaaatcacag cgttccaata       660
     cccgtaggag tatgacacgt atcaaaacca ttgtggatcc aatgcaacaa cgctccgctg       720
     cggatttaac ttgtcgtctg tcaatactcg aagcctattt caagcaggcg ctatcgttgc       780
     agtctcagat cgaggaattg gacgccgagg agataaatcg cgatacccgt ggagatatag       840
     aggagctttt tatcggaaca aaggtatgca tccaggatca gcttggccct gatgcacaca       900
     gtactgcaat tggcgatata aatgtcaatg tcgccaggcc agcaacaaaa ctacctcgac       960
     tcgcattacc gatatttgat ggcaagtact ctgaatatca aaactttata acatcgttca      1020
     gggaggttgt tggaaatcaa agtcaattag cacccatcga aaagttcaat cagttattaa      1080
     attgccttcg tggatcagca ttggaaaccg ttaaggcttt tcaaattaca tcggaaaatt      1140
     accctaaggc cttagaacga ctaaaaactc gctacgataa cccaaccctt gtatttatcg      1200
     ataatatagc cactctcttt tctctaccat cgtacacatc gtactacaac tagtatcaag      1260
     tcccgcttca acgactttga acttactctt gatttttgtg tcacccctag tatcgctcat      1320
     caccctaaca cagaaattga tatatcgtca tggcgtttgc cgcagaacac atcccttgcc      1380
     gatgaatatt tcaacaaatc tcgtcgtgtt gacttactcc ttggtacaga gacctttttt      1440
     gagattttgt caaacttagc cccaatttac ttgtactaca gaaaacgttg cttgggtgag      1500
     tagtatctgg ctgatgctct aattcgtctc ctcctcatca attgtcatat acggcgatta      1560
     catcgaacac ctgacattaa gaaacaatat attgaattta tgcaagagtt tcaagatctg      1620
     ggtcacatga gcatagtgga tcaacccaaa ctcgaccaag ctcacttcta cataccgcac      1680
     cattgcctat ttaaaccaaa tagcacgtca acaaaactta gagtagtatt tgacgcttcg      1740
     tgtcatacta gttcgcaata atctctaaac gatctgttat tagtcggtcc aacaattcaa      1800
     tagagctcta tagacttctt cttcaatttc gcatacaccg ttacgccatt actgccgatg      1860
     tagtaaaaat gtttcggcaa atcctcgaag acaagaagga tcggagattc aatattttct      1920
     ctggagagag acaccgcttg agccacttcg tacctttgag cttaatactg taacttttgg      1980
     gacagcatcg gcaccattcc ttgccattcg cagtatgaca tacctggcag atcaatactc      2040
     ggatcaattc aaggtcggta cacaagccat aaaatcttcg tttaatgtag acgattttct      2100
     atccggtgcc gatgccgtgg aatcgttagt ccagatcaaa ggtgaagtct ctacaattct      2160
     caagaagggc cacttccact tggcgaaatg gcattctaac cacaaggact ttatcgacga      2220
     tagctttctg aaaaatctaa acttggaaga cgaatcagta actagcgccc tgggcttgaa      2280
     gtgggaccaa cgaagcgacg tattcctttt ctcggttctt cctcagaaaa cctcggagat      2340
     agtttccaaa cgctctatct tgtcggttgc atctgcattg tttgacccat taggcttagt      2400
     aacgcctgtc ataacagtcg caaaaattat tgtccaagag ctatggatat taaaggttca      2460
     ttgggacgaa tcagttcccc agaacataca cttagcgtgg ctaccgtttc tctcgtcaat      2520
     gtcttctcta caatcgctaa gaattcctcg ctattgtcta aatccgggaa taatcagtct      2580
     gcagcttcat ggtttttgtg acgcatcaat cagagcctat ggctgttgca tatatccacg      2640
     cgtccacagc tcagatggta caataagagt acagctagtc acatctaaat ctcgagtagc      2700
     gccaaccagg aaattgtcga ttcccaaatt ggaattgtgc ggtgcacatt tattgtcgaa      2760
     actctacagt aaggttatta gttctttcgc aaacaaaatc ccaactacat acttgtggtg      2820
     cgattcacaa attgtattaa acttgttccg tcaacattca gccacattat cgacgtttgt      2880
     aggcaatcgc gtgtcggagg ttcaagagga aacaaccttt tgccgctgga ggtatgttcc      2940
     tacacacctt aaccctgcag atcgtatctc gagaggctgt acggtggcgg agctaaagga      3000
     gtccagatgg ttcgacgggc ctgaatttct acagttagat caaactctgt ggccagcaga      3060
     caaacgagag gagccggatg tagaaattgt aaacatggaa tcccggaaaa cagcattcgc      3120
     aatatcaacc atctcaaacc aacttctgga aggaggcgtc tgccgaatcg tacgttcgtg      3180
     cgtacactgt gtacgatatc gcccggtttt actcaaccat catgggtcaa cttcccaagg      3240
     attggcttat ccccgcgaga ccattctcaa aatgcggaat tgatttttgc ggcccagtaa      3300
     acatttacat gcgaattcgc ggcaagccac ctagcaaggc gtatatcgag ttagtctcaa      3360
     gcctgacaac ggaatcattc ctctgcgctc tcaaacgttt catagctcgg cgaggacgtc      3420
     tttcggatgt cttctgtgac aacgcaacta acttcacatg agcaaacaac aagttagaag      3480
     cactcaaaga gttcctgttc aataaggaaa ccattgaaaa aacaaatcag ttttgtaaca      3540
     atgaatttat aaattttcac tttattcccc ccagggcacc ccatttcgga ggcacctggg      3600
     aatcggccgt caaaagcgtc aagggtctcc ttaatcgaac attatgggat gcccgacttt      3660
     tatttgaaga acccagcact gcactcgctg aagtcaaggc gattctgaac tcttgtcggc      3720
     tctcaccggg tcactttttg gttggcgatg cccttcgcgc actacccgat mcgccggaga      3780
     ctgacwccaa gatggagaac ttagagcgtt ggcgacgagc ctgtgccatc maggatcaaa      3840
     tctggcgtcg ctggtcgctg gaatattckt acaaccaagg gagtttgccg acgacccatw      3900
     cacaagcttg ccctwttgcc ggtttcttga aagtcaagga ttactttcaa tggggccggg      3960
     a                                                                      3961
//
ID   BEL-44_DTa-LTR repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   30-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-44_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-356
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5667-5667 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identity to consensus.
XX
SQ   Sequence 356 BP; 130 A; 68 C; 60 G; 95 T; 3 other;
     tgttggggac tagccccaaa gaatttgtaa acacataatg taaataatta taatttcaaa        60
     gctcgcgctc ttatagctgt taagctacaa atgttattgt aatcagctgc tccaaggcgc       120
     tgccaactta gataaattat actggaaaac ttaaggcgtt gccaacttag ataaattgta       180
     ctggaaaact taaggcgttg ccaacctaga tgtattgtac tggaaaaaac acacacacas       240
     acacttgaag ttagagagtg aaamaagccg gcagcaactt kgtaacgcga attataaatt       300
     aataaatcac ccccaatctc tataaaaccg atcattaaag tgcttttgat cataca           356
//
ID   BEL-45_AA-I repbase;    DNA;    INV; 6236 BP.
XX
AC   AAGE02018048;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_AA_;
KW   BEL-45_AA-LTR; BEL-45_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6236
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018048; Positions   23479   29714.
XX
CC   'CTTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..6234
FT                 /product="BEL-45_AA-I_1p"
FT                 /translation="MMQPAKVCGKCSSGGIVGQMLGCDMCDVWFHAGCVGE
FT                 TETSLNPDSTWKCSHCSKEERREVASQHTNKSGRSSTSSRARRELLLQQLE
FT                 EQRALKLKQRAEEDEIRRKRAEEDEAFLKQKLDLILEDDNESRSSGLSSRA
FT                 SRKKVVDWLNDGRGGQTVVTSSSHNGVIVQHSNAQQLAPSSTGHTTEQMLP
FT                 TSVPPNGAPASTSTPQSGKTVKALDIDVPQTSKSLQLGSISSNANIGQHNF
FT                 EISYSTQSSLATKNMGRQSFPLNASYQIPRVGNLYQKYNPKSVADTKVTFS
FT                 GQYGAIVPPSCQILYGPQSGAVSTNWSSSVIPPDPRSSMITPVASEATIVP
FT                 SVSVPYANVTASTLSTAHLDAGQQAYPVNIAANPTGLESGVQQPNASQIAA
FT                 MCQPSPSSAQLAARQVMPRELPTFSGDPQDWPLFSSSFYNSTTACGFTDAE
FT                 NLARLQRCLKGHALDSVKSRLLMPESVPHVMETLRKLYGRPEVLIHTLLRR
FT                 LRSVPPPRTENLQSVITFGMAVRNLVDHMFVAQLLDHLRNPMLLHELVEKL
FT                 PSQLKMQWSWYKRTQTEVNLETFGEFMNELVNTASDVTLPMDILAQPSKPS
FT                 QAGRDKQKLYVHAESREEQATTSTVFSKSKQISEVNSSKKSCCYCSNEEHV
FT                 AADCPQFKALDLDGRWKAIRSKGLCRLCLIPHRKWPCRSGKECGVGGCRLR
FT                 HHALLHSQASPEATTSQRRSNSTTDSSGSRFTVQNHHTTLNYCLFRYLPVT
FT                 LEMNGKQVETYAFLDDGCQTTLMEAGLAADLDIAGPSESLWLGWTSNISRE
FT                 EKGSQRVTVNISGSGMTSQYRLSNVRIVQKLQLQGQTFQYEELRKTYPHLR
FT                 GLPMRSYVDAVPRLIIGIEHAQLLTTLKVREGRSNEPVAVKTRLGWCVYGK
FT                 QTAEGNSAIERIHLHTEEQQIRNRELHDLMKQYFAVEEAAVATPIESVEDS
FT                 RARTILEKTTRRIKGGFETGLLWKYDNPVFPDSYPLAFRRLQCLEKRLAKD
FT                 QELWKKVVALIRDYEAKGYAHKITQKELESTESGQYWFLPLGVVTNPKKPE
FT                 KVRLIWDAASRVHGISFNDTLLKGPDMLTSLFAVLLRFRQRSVAVCGDIRE
FT                 MFHQIRIISQDKQYQRFLFRERQDETPQIYVMDVATFGATCSPCSSQFVKN
FT                 KNAREFETKYPRAAEAIIKAHYVDDYLDSVDSVEEAVQLVKEVKHVHSQGG
FT                 FEIRNFISNSPDVLHQLGEQNSLQKKSLDLDGSGKVERVLGMVWKPTEDLF
FT                 TFDVVLKDDLKQFLSQRALPTKRQVLRLVMSLFDPYGFIAHFVVHGKILMQ
FT                 HIWRSGTEWDEEISPELYKMWQDWIRLLERLREVEVPRCFFGTTGSSIRAN
FT                 IQLHVFVDASEQAYACAAYLRIVQNGVVHCALVAAKTKVAPVKPLSIPRLE
FT                 LQACIIGCRLMETINAALNLNVEERFFWTDSTTALAWIKSDSRRYHPYVAF
FT                 RVGEILNSSNVDEWYHVPSKQNVADVATKWGSGPDFRPNSRWYMGEPFLHQ
FT                 SKSEWPKQAQKQWYTDEELRAVYHLHREVPQPLIDVNRFSNWNRLLRTAAY
FT                 VCRAAKKFRNQSNNGQLTSDDLLQAENLLWRQTQFEAFPDEYSVLKYNVQH
FT                 PNEPAVHLERNSKLYQESPFMDDAGVIRMNSRISAAPTASFETKYPVILPK
FT                 EHAMTRLLVDSYHRRFLHGNNNTVFNEVRQLFRIPQLRSIIKRVTGECQSC
FT                 KIKKAIPRSPMMAPLPAVRLTPHIRAFSYTGVDYFGPIFVKQGRSLVKRWA
FT                 ALFTCLTIRAVHMEIVYSLSTQSCVMAIRRFVSRRGSPAAFYSDNGTCFRG
FT                 ANNLLCEQIQALHQDCAVTFTNAKTSWHFNPPSAPHMGGCWERMVRSVKTA
FT                 MAAIADHPHHPSDEVLETVLLEAEAIINSRPLTYVPLDDADQEVLTPNHFL
FT                 LYGSTGVVQPRSALTIEGSTLRDSWKLSQYLVDLFWRRWVREYLPTLTRRT
FT                 KWFHPIKPLETGDVVLVVDDTKRNGWLRGRIIEVMKGKDGQTRRAVVRTKD
FT                 GLLTRPAVKLAVLDVQANRKSCLDAGSPELHGWG"
XX
SQ   Sequence 6236 BP; 1756 A; 1459 C; 1615 G; 1406 T; 0 other;
     atcttcaaag attttccggt atttgttgcg tagtaagcaa ctcgaagctt cggaatgatg        60
     cagccggcaa aagtatgtgg aaaatgctcg tctggaggaa tagttgggca gatgctagga       120
     tgcgacatgt gcgatgtctg gttccacgct ggatgtgtcg gagaaacgga gacaagtcta       180
     aacccggata gtacgtggaa gtgtagccat tgctccaagg aagaacgcag ggaagttgcc       240
     agtcagcaca ccaacaagtc ggggagaagt tcaacgagta gtagagcccg tagagaacta       300
     ctgttgcaac aactggagga acagcgagcg ttgaagctca agcagcgggc agaagaggat       360
     gagatccgga ggaagcgagc tgaagaagat gaagcctttc tgaagcaaaa gctggatttg       420
     attctggaag acgacaacga gagtagaagc agcggactga gcagtcgggc aagcaggaag       480
     aaggttgttg attggcttaa cgatggtcga ggcggccaaa cagtagtgac cagttcgtca       540
     cataacggag tcatcgttca acactctaat gcccagcagt tagcaccgtc gtcaacaggt       600
     cataccacgg agcaaatgct gcctacttca gtgccaccca acggagctcc cgcctcaaca       660
     tcaacaccac agtcaggtaa aactgtaaaa gctctagata tagacgtccc tcagactagc       720
     aaatctctgc aattaggctc catttcctcc aatgcaaaca ttggacagca caattttgag       780
     attagttact caacacagtc cagtttagca acaaaaaata tgggtagaca gtcctttccc       840
     ctaaacgcat cctatcaaat tccccgggta ggcaatctat atcaaaaata taatcccaag       900
     tcagtcgctg acacaaaagt gactttttcg ggacagtatg gtgcaatagt tccaccctcc       960
     tgtcaaattc tgtacggtcc gcagtcaggg gcagtatcta ccaattggtc gtcgtcagta      1020
     ataccaccag atccgcgaag ttcgatgatt actccggtcg ccagtgaagc aacaatagtg      1080
     ccaagtgtat ccgtgccata cgcgaacgta acagcatcaa cgttatcaac cgcacatcta      1140
     gacgcaggtc agcaagcata tcccgtcaac atagcagcaa atccaacagg actggagtct      1200
     ggtgtgcaac agcctaatgc atcacaaata gcagcaatgt gtcagccttc gcccagtagt      1260
     gcgcagttgg cggcaaggca agtgatgcca cgcgagctac cgactttctc cggtgatcca      1320
     caggattggc cgttgttctc tagttccttt tacaattcaa cgacagcgtg tggattcaca      1380
     gatgccgaga atttagccag gttacaacgt tgtctgaaag gtcatgctct cgattcggtg      1440
     aaaagtcgtt tgttgatgcc agaatcggtg ccgcatgtga tggaaacact acgaaaattg      1500
     tatggaaggc cagaagtact catccacaca ctcttgcgaa ggcttcgtag cgtaccaccg      1560
     ccgaggacgg agaatctcca gtcggtcatc acgttcggaa tggctgtgag gaacctggtt      1620
     gatcacatgt tcgttgcgca gctcttggat catctgcgta accctatgct acttcatgaa      1680
     ttggtggaga agcttccatc gcagttaaag atgcagtggt cgtggtacaa gcgtacacaa      1740
     acagaggtga acctggagac atttggggag ttcatgaacg agcttgtcaa cacagcatcg      1800
     gacgtgaccc ttccaatgga catattggcg caaccgtcca aaccaagcca agcgggaaga      1860
     gacaagcaga agctgtacgt acatgctgaa tcaagagagg agcaagcaac gacatcgact      1920
     gtgttcagca aatcaaagca aatctcggag gtgaatagta gcaagaaatc ctgttgctac      1980
     tgttctaatg aggaacatgt agcagccgat tgtcctcagt tcaaggcatt agatctagat      2040
     ggaagatgga aagcaatccg atccaagggc ctatgcagat tatgcttgat tccgcatcgg      2100
     aaatggccct gccgttcagg caaggaatgc ggagtcggcg gttgccggtt acgccatcat      2160
     gcactgctcc attcgcaggc atctccagag gccacgacta gccaaaggag gtccaacagc      2220
     acaacagatt caagcggatc taggtttacc gtacaaaatc atcatacgac attgaactac      2280
     tgcttatttc gttacctgcc ggtgacgcta gaaatgaatg gaaagcaggt cgaaacgtat      2340
     gcttttctcg acgatggttg tcaaacaacg ctcatggaag ctggattggc tgctgattta      2400
     gacattgccg gaccaagtga atcgctctgg ctaggatgga cgagtaacat ctcgcgggag      2460
     gaaaaggggt cacagcgcgt aacagttaat atatcgggca gcggaatgac gagtcaatac      2520
     agattgagca acgtgcgcat agtgcagaaa cttcaattgc aaggacagac gtttcagtac      2580
     gaggaactaa ggaagacgta ccctcactta cgtggtcttc caatgcgcag ttacgtcgac      2640
     gctgtaccaa gactcatcat cgggattgaa catgcacaac tacttacaac cctgaaagtg      2700
     cgagaaggca gatcaaacga gccagtagcg gttaagactc gactaggctg gtgcgtctac      2760
     ggcaagcaga cggctgaagg taattctgcc atcgaacgaa ttcatctcca cacagaggag      2820
     caacaaatca ggaaccgtga gctgcatgac ttgatgaagc aatactttgc tgtggaggaa      2880
     gctgcggtgg ccaccccgat cgaatccgtc gaagacagtc gagctcgcac aatcttggag      2940
     aaaaccaccc gtaggattaa aggaggtttt gaaactggat tactctggaa atacgacaat      3000
     ccagtctttc cagacagcta ccctctagcc tttcgaagac ttcaatgttt ggagaagcga      3060
     ctggctaagg atcaagagct ttggaagaaa gtagttgcac tgattcgtga ttatgaagca      3120
     aagggttacg cgcacaaaat cactcaaaaa gagttggaat ccactgaatc gggccaatac      3180
     tggtttcttc cattaggggt tgtgacgaac ccaaagaagc cagagaaagt tcgcctaatc      3240
     tgggatgctg cgtcgcgggt gcatggcata tccttcaatg acacgctgct gaaaggacca      3300
     gacatgctga cgtcgttgtt cgctgtttta ctgaggttca gacagaggtc ggtcgcggtt      3360
     tgtggagaca tccgcgaaat gtttcatcaa attcgaataa tttcgcagga caagcaatat      3420
     caaagattct tgttccgcga gcgccaagat gaaacacccc agatctacgt gatggacgtg      3480
     gctacgtttg gcgcaacgtg ctctccctgt tcgtctcagt tcgttaagaa caagaacgcc      3540
     cgggagtttg aaacgaagta cccgagagca gcagaggcga tcatcaaagc tcactatgtt      3600
     gacgattacc tcgatagtgt agattccgtg gaagaagctg tgcagctagt gaaagaggtg      3660
     aagcacgtac acagtcaagg tggtttcgaa attcgaaact ttatatcgaa ctctcccgat      3720
     gtcctgcacc agttaggaga acaaaatagt ctgcagaaaa agtcgctcga tctagatggc      3780
     tcaggaaagg tcgagcgtgt gcttggcatg gtatggaagc cgaccgagga cttgtttacc      3840
     ttcgacgtgg tactgaaaga tgatcttaaa cagtttctgt cgcagcgagc tctaccaaca      3900
     aagcgacaag tgctacggct ggtaatgtca cttttcgatc cttatggatt catcgcccac      3960
     tttgtcgtcc acggcaagat attgatgcaa catatctgga ggagcggaac agaatgggac      4020
     gaagaaattt cccccgagct gtataaaatg tggcaagact ggatacgttt gctggagcgg      4080
     ttacgggagg tggaagtccc acgatgtttc tttggtacaa ccggcagcag catacgtgca      4140
     aatatccagt tacacgtatt cgtcgacgca agcgagcaag cttatgcgtg tgcagcgtat      4200
     cttcgtatag tgcaaaacgg agttgtccac tgcgcgcttg tcgcggcgaa aacgaaagtg      4260
     gccccagtga aaccgctttc tattcctcgg cttgaactgc aggcttgcat aatcgggtgt      4320
     cgtttgatgg aaaccataaa tgcagcactg aatctcaacg ttgaggagcg attcttctgg      4380
     acggactcca cgacggcact tgcgtggatt aaatccgaca gccgccgcta tcatccatac      4440
     gtggcatttc gagttggcga aattcttaac agctcaaacg tcgacgaatg gtaccacgtt      4500
     ccttcaaagc aaaatgtggc agacgttgcc acaaaatggg gtagtggtcc agacttccga      4560
     ccgaacagtc gttggtacat gggtgagcct ttccttcacc agtccaaatc cgagtggccg      4620
     aaacaggcgc agaagcagtg gtacacggat gaagagttgc gtgcagtcta tcaccttcat      4680
     cgggaagtgc ctcagccgct cattgatgta aacaggttct ccaattggaa tcgtttgcta      4740
     cggacggctg cgtacgtttg tcgcgctgca aagaagtttc gcaatcagag taacaatgga      4800
     cagctaacga gcgatgacct gttgcaggca gaaaatcttt tgtggcgaca gacacagttt      4860
     gaagctttcc cggacgagta tagcgtgctg aagtataatg ttcagcatcc gaatgaacct      4920
     gcagtgcatc tggaaaggaa cagcaaactg tatcaagagt cgccgttcat ggatgatgcg      4980
     ggtgtaatta gaatgaacag cagaatttca gctgcaccaa ccgcttcgtt cgagacgaaa      5040
     tatccagtca ttttgccaaa agagcatgct atgactcgtc tactggttga cagttaccac      5100
     cgacgctttc tgcatggtaa caataataca gttttcaacg aagttcgaca gctcttcagg      5160
     attccccaac tacgttcaat catcaagcgg gttaccggag aatgccagag ttgcaaaatt      5220
     aagaaagcta ttccgaggtc acccatgatg gccccgcttc cagccgtacg actaactccg      5280
     cacattcggg cgttcagcta tactggtgtg gactattttg gccctatatt tgtcaaacag      5340
     ggtcgcagct tagtgaagcg gtgggcagca ttattcacgt gcctcactat acgtgcagtg      5400
     cacatggaaa tcgtatatag tctgtcgact caatcctgcg tgatggcaat tcgtcgtttt      5460
     gttagtcgaa gaggatctcc agcagcattc tactccgaca acggaacctg tttcaggggt      5520
     gccaacaatc tgctgtgtga acagattcaa gcccttcacc aggactgtgc ggtaactttc      5580
     accaatgcaa agacttcgtg gcatttcaat ccgccctctg cacctcacat gggaggatgc      5640
     tgggagcgta tggtacgctc cgtcaaaacg gcaatggcgg ctatagcaga tcatccacat      5700
     catccaagtg acgaagtgct tgagactgtg ctactagaag ctgaagcaat cattaactcg      5760
     cgaccgctca cctacgttcc actcgatgac gcagatcaag aggttttaac accgaaccat      5820
     ttcctactct acgggtcgac gggagtggtt caaccaaggt cagcattaac aatagaagga      5880
     tctacattgc gggacagctg gaaactctca caatacttgg tggatctgtt ctggaggcga      5940
     tgggtgcggg agtacttacc aactttgacc aggcgaacaa agtggttcca cccgataaaa      6000
     ccgttagaaa ccggagatgt agtgctcgta gttgatgaca ccaaacgaaa tggatggcta      6060
     cgaggacgga tcattgaagt aatgaagggg aaggacggac agaccaggag ggcagtagtt      6120
     cgaaccaaag acggattgtt aacgaggcct gctgttaagt tggcagtact ggacgtacag      6180
     gcaaaccgga agtcgtgcct agatgcaggc tccccggaac ttcacgggtg ggggaa          6236
//
ID   BEL-45_AA-LTR repbase;    DNA;    INV; 580 BP.
XX
AC   AAGE02018048;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_AA_;
KW   BEL-45_AA-I; BEL-45_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-580
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018048; Positions   22899   23478.
XX
SQ   Sequence 580 BP; 199 A; 84 C; 121 G; 176 T; 0 other;
     tgttaaagaa ccacagggca gcaacgtttg gtgagttccg tatcacccgc agttgtcgaa        60
     ttgacggctg gtaaatgaaa gcgtagatgg gagaaagaat gacgtagcag gcagacgaat       120
     gatgaggcag aattgagaat cgaacaaata gcaaatcaag tgcaggtgga attgaactga       180
     agaatttcta gttagtgact aggtaaattg tttatcctac ttaaatatta cgtaaaattg       240
     ttctaattat tattacattt aatagtatct taaacctagt agtacggaat tgaagcgtat       300
     gaattcgtta tttcctatag ctacattcta aaagtaagta atgcaataca attgaattct       360
     aaagactaat tgttcgatga tggttgatat taggttaatg caataacgca ttgcggtttt       420
     ttgaattgtt tcggctagaa ataagaagga cacgaaaatg tgagtaaatt gatttgtgca       480
     aattatctcc taaattactc attgcaatat aattgcagct ttgaagctga agtaactgct       540
     atcaagacgt gtcacgacct tccttacgtt atccgaaaca                             580
//
ID   BEL-45_AnFu-I repbase;    DNA;    INV; 4281 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4281
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 692-692 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..3932
FT                 /product="BEL-45_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H."
FT                 /translation="MDQKTVTNEEAVSSRDAVPTTQRESVSKREVSDVEDA
FT                 VVRTRAVAARVEKFEKGELAEATHTAKQRNARGASQPKPIRQESDCKKQSS
FT                 KDKGIKALEAKHATEMLEKENEIESLRLELERMKQHEIGATNDRYQRSSRA
FT                 AAWLLDDTSSTASEHLSCRNRMLLDSDSETEPEEKPLTRRQVSARKLLQKP
FT                 LPVFSGVPEDWPMFIRSFEDTTKACGFSNLENLQRLRDSLRGDALEAVRGR
FT                 LVLADSVPDIIEELRNLFGRPRRILKSLLRKVRAVPTPDADRLESFISFGI
FT                 AVKQLVSHIVGAELKEHLDNPMLVEELEDKLPGSYQLEWVRFRRHRRGKAL
FT                 KVFADYLSELIVDITEVKDFGASKLHRGVVRSEKRTSMHHHSVEVPEVKAC
FT                 YVCQSTSHKVRTCNVFKNLSVATRLEYVEKNNLCINCLNNHGKTVCRFKRA
FT                 CGVDNCRENHHPLLHRVPARAEAECNAQRSKNDTTIFRTIPVTLSVGDREY
FT                 KTLAFLDEGASATFIEEVVADELNVKGVTEPLVITWCADVERREEKSRKVD
FT                 IVLSTSGSGKKFLLKGARTVTKLVLPSQNGSYRELQHRYPHLKDVPVEDAE
FT                 NLPVRILLGLDNIDLFAPLESKIGQPGEPIAVKSKIGWTIYGPKNLVSDET
FT                 RELINYHTILSVTNEELHDVLRAQYTLDDVGTNNGQLPVSTADRRADEIMQ
FT                 ATTVRIGDRFETGLLWKSHVRKFPPSFEMAKRRLEGLKRKMAKDKEVAKAV
FT                 QKMILDYEEKGYAHKLTQQELDETDPAAVWYLPLNVVKNPNKPGKLRLVWD
FT                 AAATVKGVSLNSELLKGPDMLCSLPSVLCPFREGRIGFGGDIKEMYHQIVI
FT                 RKEDRQAQRFLFPDPTTGDPLMYVMDVATFGSTCSPCSAQFVKNKNADELS
FT                 SVFPEACEAIKHRHYVDDYYDSTDTVEEAVHLAKQVSYVHSKGGFHMRNWV
FT                 SNGERFSEEMGEKSPADAISFKQKLAEGTATFDRVLGIRWNVKDDTFQFTP
FT                 PTKALEYDHPTKRMVVSCVMSLFDPMGYLSPFLVLGKILVQMLWRTGCDWD
FT                 EKIDHASLSKWEGWRQQMQKIEAVKIPRAYFGAASSKQILELQLHIFTDAS
FT                 ETAYGCVAYFRAVFADKVKCALVMSRSKVAPIKQRTIPQLELCAAVLGARL
FT                 ARTVRSMHRLTIDKQVIWCDSRTVLSWLRSDQRRYKPYVAFRIGEILEISN
FT                 VMDWRWIPSGQNVADSLTKQSKEWCFKPDSAWLKGPAFLYDSEKEWSEQPT
FT                 IDMNTAEELRASFM"
XX
SQ   Sequence 4281 BP; 1320 A; 856 C; 1136 G; 969 T; 0 other;
     ataaaaagct aattaccctc acatcagcaa gtactgtgag atagtttgat tcaagtgaac        60
     ttgttccatc cacctgcaaa agtgttcgtg cgtaaataat cctagcaatg gatcagaaaa       120
     cggttaccaa cgaagaggct gtatcatccc gggacgcggt gcctacgacg caacgtgaat       180
     ccgtcagtaa aagagaggtc agcgacgttg aggatgctgt ggtacgaacg agagcagtag       240
     cagcgagagt ggagaagttc gagaaaggcg aactggcgga agcgacgcac acagctaagc       300
     aacggaatgc acgtggtgcg agccagccga aacctattcg ccaggagagc gactgcaaaa       360
     agcagtcaag taaagacaaa ggcatcaagg cgcttgaggc aaagcatgca actgagatgc       420
     tagaaaagga gaatgagatc gagagcttgc gcttagagct cgagagaatg aagcagcatg       480
     agatcggcgc tactaacgat cgttaccagc gttcatcgag agcagccgcg tggttactcg       540
     atgacactag tagtaccgcg agtgaacatt tgtcgtgtag aaatcgcatg cttttagata       600
     gtgatagtga aacggagcca gaagagaagc ccctcactcg tcgccaggta tccgctcgca       660
     aattactgca aaaaccgtta cccgtgttta gtggtgtccc cgaggactgg ccgatgttca       720
     tcagaagctt tgaggatacg acgaaagcgt gtgggttttc taacctcgaa aatctgcaac       780
     gtttgcggga tagccttcgc ggagatgcac tggaagcagt aagaggaaga ttagtgctgg       840
     ccgattccgt gccggacatc atcgaagagt tgcgaaatct ttttggcaga ccgcggcgaa       900
     ttttaaaatc attgctgcgt aaagtgcgtg cggtacctac tcctgatgct gatcgtttgg       960
     agtcgtttat aagcttcggc attgctgtga agcaattagt aagccatata gtgggagctg      1020
     aattgaagga gcatctggat aatccaatgc tggtcgagga actggaggac aagctgccgg      1080
     gaagctacca gctggaatgg gtgcgtttta gaaggcacag acgtggaaag gcgctgaagg      1140
     tgtttgcgga ttacctaagt gagctgattg tagacatcac ggaagttaaa gactttggcg      1200
     ccagcaagct gcatcgagga gtcgttcggt cggaaaagcg aacgagtatg caccatcact      1260
     ccgtagaggt tccagaagta aaagcatgct acgtatgcca aagtacatcg cacaaggtaa      1320
     gaacgtgtaa cgtatttaaa aacctttcag tggcgacacg gcttgaatac gtggagaaaa      1380
     acaacttatg catcaattgc ctgaacaacc acgggaaaac agtgtgccga tttaagcgtg      1440
     cttgtggcgt tgacaattgt cgagaaaacc atcacccttt gttgcatcgg gtaccggcgc      1500
     gtgcggaagc agagtgtaac gcccaacgca gcaaaaatga tacgacgatt tttaggacca      1560
     tcccggtaac attgtcagta ggcgaccgag agtacaagac gctcgccttt cttgacgaag      1620
     gagcttcggc tacgttcatc gaagaagtag tggcggatga actcaacgta aagggagtga      1680
     ccgaaccgct tgtaataact tggtgtgcag atgttgaacg acgcgaagaa aagtcaagga      1740
     aggtggatat cgttctttca acgagtggct cgggaaagaa gtttctactg aagggggcac      1800
     gaaccgtgac aaaattagtg ctaccttcac aaaacggatc ctatcgagag ttgcagcacc      1860
     gctatccaca cctaaaggat gtaccagtgg aagatgcgga aaatttgcca gtgaggatcc      1920
     tacttggctt ggataatata gaccttttcg cgccgcttga atctaaaatt gggcagccag      1980
     gagaaccaat cgcggtgaag agcaagatcg gctggaccat ctatgggcca aaaaacttgg      2040
     taagcgatga aacgagagaa ctgattaatt accacactat cctttcagtc accaacgaag      2100
     agctgcacga tgtcctgcga gcgcaataca cactcgatga cgttggtaca aataatggtc      2160
     aactgccagt atcaacggct gatcgcagag cagatgaaat aatgcaagct actacggtac      2220
     gaattggtga cagatttgag acaggattgc tgtggaaatc tcacgtcagg aaattcccac      2280
     caagttttga aatggcaaaa agacgactag aaggcttgaa acgtaaaatg gctaaggata      2340
     aggaagtcgc caaagcggtc cagaaaatga ttcttgatta cgaagaaaaa gggtacgcgc      2400
     acaagctgac tcaacaggaa ctagatgaga ccgatcctgc cgcggtatgg taccttccac      2460
     taaatgtggt aaagaatccc aacaaacctg ggaagttaag gttagtttgg gacgcagctg      2520
     caacggttaa aggtgtgtcc ttaaattcgg agttattgaa aggaccagat atgctttgtt      2580
     cgttaccatc tgtactctgt ccttttcgag aaggccgcat tgggtttggt ggagacataa      2640
     aggaaatgta tcaccaaata gtcatacgaa aagaagatag gcaagcacaa cgattcctgt      2700
     tccctgatcc aacgactggt gaccctctga tgtacgtaat ggatgttgct acattcggat      2760
     cgacatgctc cccgtgctcg gcacagttcg tcaaaaacaa aaacgccgac gagctctcca      2820
     gcgtattccc cgaagcttgc gaagcaatta agcatcgaca ctacgtcgat gattattacg      2880
     acagtacaga tacggtggaa gaagcggtgc atttagcaaa acaagtgtcg tatgtgcatt      2940
     cgaagggagg tttccacatg agaaattggg tcagtaacgg agagcgtttt agtgaggaaa      3000
     tgggagaaaa aagcccagct gatgcgatca gtttcaaaca gaagttggca gaaggtacgg      3060
     caacgtttga tcgagtattg ggaataaggt ggaatgtaaa ggacgacaca tttcagttca      3120
     cgcctcctac taaggccctt gagtatgatc atcctacgaa gcgaatggta gtaagttgcg      3180
     ttatgtcgct attcgacccg atgggatatc tctccccatt tctggtgcta ggaaagatac      3240
     tggttcagat gttgtggaga actggctgcg attgggatga aaaaatcgat catgcgagtt      3300
     taagtaaatg ggaaggctgg aggcaacaaa tgcaaaagat cgaagctgta aaaattcctc      3360
     gtgcatattt tggagctgcg tcatcaaaac agatactaga gcttcaacta catatcttca      3420
     ctgatgccag tgagacagca tatggctgtg tagcatactt tagagcagtg tttgcagaca      3480
     aagttaaatg tgccctggtg atgagtcgct cgaaggttgc ccctattaaa caaagaacaa      3540
     ttccacagtt ggaactatgt gctgctgtgc ttggagctag gttggcgaga acagtaagaa      3600
     gcatgcatag gcttaccatt gacaagcaag tgatctggtg cgactcacgg acagtactat      3660
     cgtggttacg ttctgaccaa cgtcgataca aaccttatgt tgcattccga ataggtgaaa      3720
     ttttagaaat ttcaaatgtg atggattggc ggtggattcc ctcaggccaa aatgtagcgg      3780
     attcactaac caaacaaagt aaggaatggt gttttaaacc agattcagca tggctaaaag      3840
     gaccagcgtt tttgtacgat agtgagaaag aatggtcaga gcagccgact attgacatga      3900
     acacagcaga agaattaagg gcatcgttta tgtagcacga aatagtaata ccgacgcctc      3960
     taatagacct gacaaggata tccagatcga cagtgcttgt gcgtacaatt gcttgcgtgt      4020
     tgcgggttat ttctaattgc aaaaggaagc gagataagaa cgaaatagag actgtgacag      4080
     caactaacgc acaacagaaa aatactggcg atttagaaca atgtagtgaa agtgccgtta      4140
     agaagagacg aatattatag atctaaatgt gcattaataa ggttaataag aataagaggt      4200
     taacgggcaa catgtaattt agcggtcgta gggatttagt aacactaggt ggtaaaacca      4260
     caccaggatt acgagtgggg g                                                4281
//
ID   BEL-45_AnFu-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-221
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 747-747 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 236 BP; 82 A; 40 C; 58 G; 54 T; 2 other;
     tgttgagaac gaccgcacct cgacccgacg atctaaacga gatgcgtagg aggaatatgc        60
     gtgcgctgat cgagatccgg ttaagggaaa aagtgtgcgt agaaagggat ccggtcwggt       120
     cagtagctaa gcaatcgtkg gtgaggaaga tactagcttt ttataaaaac aaacttaagc       180
     aagaaaataa agttgattta tttaaaaaaa gtattagtcc acgattctac tcaaca           236
//
ID   BEL-45_CQ-I repbase;    DNA;    INV; 5822 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_CQ_;
KW   BEL-45_CQ-LTR; BEL-45_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5822
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 243-243 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4805-5386] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           341..5821
FT                 /product="BEL-45_CQ-I_1p"
FT                 /translation="MWRSLLKLYPEPGSENEKEEEKLAVIVPVPSPVKPLT
FT                 PKKLWEKKKAKMADGEVKALSKKRSQVKGKLTRILHAVQPSTQPGALPGAQ
FT                 AREADVLPPQLRVHQRSVEKYYGEFCELHNKIMDLVEDDEGTKQQEAKWVE
FT                 FEELYNRTLVVLETLLTAHDRPTQAVLPAGQAAQQVIIHQQALRAPLPTFD
FT                 GRYENWAKFKAMFQDLMRSSPDSDAVKLYHLDKALVGDAEGKIDLRTIQDN
FT                 NYQEAWNQLEEQYENTRLIIDLHIQGILQLKKMDKRSSKELRDVVERCSRH
FT                 VEGLRFHKQELLGVSELIVVNILAAALDRETRELWEATIEKGELPTYQATV
FT                 DFLKKRCHILERCEQSDPVASAVEPTISKKLPSKPSAKMSAAAMTTSEVKC
FT                 ELCGGNHPNYKCSTFCSMSVPQRLAKLREVRACFNCLRTGHHIKTCPSEKT
FT                 CKCGEKHHNLLHMDKPKEQASSKSEASPIPQPTTEQAAGGSGSVTAAVADA
FT                 NPKQTTSCCSSGVLQTSRPVLLQTAIIDVMDKHGRLHPCRTLLDSGSQAHI
FT                 LSAAMARTLDLPLMKCNVTVIGANAVKTPARRGVNLNFSSRYSDFQDTISC
FT                 LISEKPTGIIPSGRIDASGWGFPSGLQLADPHFCEPNDIDLVMASNYVWDL
FT                 LRTEKVKLHNGTVTLRETDLGWIVTGTYDPFDQVSQSFVHSNVVRLDALKE
FT                 AVEKFWTVEELAETAPPSAENNDVEKHFVETHHRDESGRYVVQLPFRDTVS
FT                 ELDDNRTLALRRFSQLERRLSRNPDLKLQYSAFIDEYEALGHCKEVFEEQD
FT                 PPDTKKFYLPHHAVLKPSSSSTKLRVVFDASAKSSRYSLNDVLKVGPTVQS
FT                 DLFSILLHFRRYLIAFSADAVKMYRQVKIVPEHRPFQRIFWRKEPSDRLRV
FT                 LELNTVTYGTASAPFLATRCLTQLAESAKDRFPKTAKKIKEDVYVDDMLSG
FT                 ADTAEEAQTCVKEVKELLAEGGFQIKKWCSNSEAVLEGVPEEDREILVKID
FT                 ECSVSEGIKALGILWDPKQDEFRFQNVLSESDILPITKAKVLSDIAKLFDP
FT                 LGLISPVIVCAKVIMQKLWADKLGWTDPLQGELLKEWLDFRSSLDGLKDIR
FT                 IPRCAVVPGAVRYEVHGYSDASTVAYGACVYLKCFMPDSKTVVSRLLCSKS
FT                 RVAPLKQLTIPKLELEAALLLSLLVVKVLATLDLEIAEVVLKSDSQIVLAW
FT                 LRRPLDTLEVFQRNRVAKINALTKGFTWAYVRTNENPADFVSRGQLPAPLS
FT                 RNNLWWEDTPSTTTTAVDPAPILEQELPGLVASLSNTVESELLPVFTRFSD
FT                 FRHLQRVVAYVCRFIQNLKSKRAGQPTCRTNYLTIPETRKALKCIVRCLQV
FT                 HALLEDYNSVKQSGAAHRLARLAPILDSDGCLRVGGRIQKSSLPEEAKHQL
FT                 ILPRHPVTESLIRAMHIENLHIGPSGLLAATRQKFWLLAGRSITRKITTKC
FT                 MCCFRAKPRGIEQFMGQLPDERVNVAAPFEFTGVDYAGPMLVKQGKYRPKV
FT                 VKAYIAVFVCMATKNVHLELVSELTAEAFIAALERFINRRGMVRKLFSDNG
FT                 TNFVGASGMLRDFYRLLSSDLLLRELHELLLPKEIEWSFIPPRAPNFGGLW
FT                 EAGVKSVKTHLKRTLVNATLTFEEMATMLTHIEAILNSRPLYSASDCPGDA
FT                 LPITPAHLQIGRPLQSVPKPSCSSVPDNRLPRWRYLDKLREHFWDRWSREY
FT                 LTSLQVRGKWHKKTANVRPGMVVLLIEDNLPPQSWKLAIVIKTYPGPDQLV
FT                 RVVDVKVGNKILQRSISKLAPLPTEDNDQLRQVPEPSGLDEIPSLEEASAS
FT                 QSGRR"
XX
SQ   Sequence 5822 BP; 1456 A; 1580 C; 1609 G; 1177 T; 0 other;
     tttggtccat tcgtaccgga ctttggccat tcgaccgtcg gatccgcgag tgaaaagtgt        60
     ccagtggatt ccggaaatcg tgcgagcgga agaacgcatc ggtaagaaga agttaccgat       120
     cgtgtgatcc gggagtagga aaagttctaa agactcccgg agggcgaccc acgcggccct       180
     gaacagcgga aacagtggcg gcaagagtcc gcaataaaag gaaaaaagtt ccgtgcctgt       240
     gcagtgaaga tcagcgaagc gacgccattt tgttttccag ttcccaagag aggaacaatc       300
     cgtggaatgc agacagcgca agagttgctg gtctgatttc atgtggcggt cgctcctgaa       360
     gctgtacccg gaaccaggaa gcgaaaacga aaaagaagag gaaaaactcg ccgtcatagt       420
     gccagttccg tctccagtga aaccgctaac gccaaagaag ctgtgggaga agaagaaggc       480
     aaagatggcg gacggagagg tcaaggccct ttccaagaag cgaagccagg tgaagggaaa       540
     actcacacga atcctgcacg cagtccagcc gagcacgcag cccggtgccc tacctggtgc       600
     ccaagctcgt gaggccgacg tactcccgcc gcagctacga gtccaccagc ggagtgtgga       660
     gaagtactac ggtgagtttt gcgagctcca caacaagatt atggacctgg tagaggatga       720
     cgagggaacc aagcagcagg aggcaaagtg ggtggagttc gaggagctct acaaccgaac       780
     gttggtcgtg ttggaaacgc tgctgaccgc tcatgacagg ccgacccagg ctgtgcttcc       840
     ggctggccaa gccgcccagc aggtcatcat ccatcagcaa gcgttgcgtg ccccactccc       900
     gacgttcgat ggacgttacg agaactgggc aaagttcaag gcgatgttcc aagacttgat       960
     gcgcagctcg cccgactctg atgctgtcaa gttataccac ctggacaagg cgctggtagg      1020
     cgacgcggaa gggaagatcg accttcgaac tatccaggac aacaattatc aggaagcttg      1080
     gaatcagctg gaagaacagt acgagaatac gcggctgatt atcgatctcc acatccaagg      1140
     catcttacag ctgaagaaga tggacaagcg atcgtcgaag gagttgcgag atgtcgtcga      1200
     gcggtgttcc agacacgtcg aaggtctacg cttccacaag caggagctgt tgggagtgtc      1260
     tgagcttatc gtggttaaca tcctcgcagc tgctctggac cgcgagacga gagagctctg      1320
     ggaagcgacg atcgagaaag gtgagcttcc aacgtaccag gcgaccgtcg atttcctaaa      1380
     gaagcggtgt cacattctcg agcgatgtga gcagtccgac ccggtggcat ctgctgtcga      1440
     accgacaatc tccaagaagc tcccttcgaa accttcggcg aagatgtccg ctgcagccat      1500
     gacgacaagc gaggtcaagt gtgagctgtg cggcggcaac catccgaact acaagtgtag      1560
     caccttctgc agcatgtctg tcccacagag gcttgcgaag ttgagagagg tacgggcctg      1620
     cttcaactgc ctcagaaccg gccaccatat caagacttgt ccctccgaga agacctgtaa      1680
     gtgtggagag aagcaccaca atctgctcca catggacaaa ccgaaggaac aagcttcttc      1740
     aaaatctgag gctagtccca ttcctcagcc aaccaccgag caagcagctg gtggttccgg      1800
     atcggtgacc gcagcagtgg cagacgcaaa cccgaagcag acaacatcgt gctgtagcag      1860
     cggagtgcta caaacctccc gacctgtgct gttgcagaca gcaattatcg atgtgatgga      1920
     caagcacgga cggctgcatc cgtgccgcac gctcctggac tctggatccc aagcacacat      1980
     cctgtcagcg gcgatggcgc gaacgctcga ccttcctttg atgaagtgta acgtgaccgt      2040
     gattggagcg aacgctgtga aaaccccggc gagacgaggt gtcaacctga atttctcctc      2100
     gcggtacagt gacttccagg ataccatttc ctgcctcatc tcggagaagc caaccggcat      2160
     cattccgtcc gggagaatcg acgcgtccgg atgggggttt ccgagtggat tgcagcttgc      2220
     agatccacat ttctgtgaac ccaacgacat tgacctagtg atggcatcca actacgtgtg      2280
     ggatctgctg cgcacggaga aagtgaagtt gcacaacggc accgtcacgc tccgagagac      2340
     ggaccttggt tggattgtta cgggcaccta cgacccgttc gaccaggtga gtcaatcttt      2400
     cgtccactca aatgttgtgc gtctggatgc tctgaaagaa gccgttgaga agttttggac      2460
     agtcgaagag ctggctgaaa cggcaccacc ctccgccgag aacaacgacg tcgagaagca      2520
     tttcgtggaa acccatcacc gcgacgagag cggccgttac gtagttcaac tcccgttcag      2580
     agacaccgtt tcagagttgg acgacaaccg aaccctggcc ttgagaagat tctcccagct      2640
     tgaacgccgc ctttcacgaa acccagactt gaagctgcag tactcggcct tcatcgacga      2700
     atacgaggca cttgggcact gcaaggaagt ttttgaggaa caagatccac cagataccaa      2760
     gaagttctac ctaccacacc acgcagtgtt gaagccctcc agttcatcta ccaagttgcg      2820
     agtggtgttt gatgccagtg cgaagtcttc gaggtactcc ttgaacgacg tcttgaaagt      2880
     gggccccacc gtgcaaagcg atctgttttc catcttgctt cacttccgcc ggtatttgat      2940
     tgctttctcg gctgacgccg tcaaaatgta tcggcaagta aagatcgttc ctgagcaccg      3000
     accatttcaa cgaatcttct ggagaaagga gccctcggat cgcctcagag tgctcgaatt      3060
     gaacaccgtc acgtacggca cggctagtgc cccgtttcta gccacccgtt gcctgaccca      3120
     gctggccgag tcagccaagg accgcttccc gaagactgct aagaagatta aggaagatgt      3180
     gtatgtcgac gacatgctgt ctggagcgga cacagcagag gaggcacaaa cgtgcgtgaa      3240
     ggaagtaaag gagctgttgg cggaaggcgg tttccagatc aagaagtggt gctcaaactc      3300
     ggaagctgtt ctggaaggag taccagagga agatcgtgaa atactagtga agatagacga      3360
     gtgtagtgtg agtgaaggaa tcaaagcatt gggaatcctg tgggacccaa aacaggacga      3420
     attccgattc caaaatgtgc tcagtgaaag tgatatcttg cccatcacca aagccaaagt      3480
     actgtcggac attgcaaaac ttttcgatcc gctgggcttg atatcaccag tgatagtgtg      3540
     tgcaaaggtg ataatgcaga agctgtgggc cgacaagctc ggctggactg acccgctgca      3600
     aggagagttg ctgaaggagt ggctcgactt ccggagttca ttggatggac tcaaggacat      3660
     cagaatcccg cgatgcgctg tcgtaccggg cgccgttcgc tacgaagtac acggatactc      3720
     ggacgcctcg accgttgctt acggtgcttg cgtctacctc aagtgcttta tgcccgacag      3780
     caaaaccgtc gtgtcccgcc tgctgtgttc caagtcgcga gttgcaccct tgaagcagct      3840
     tacgatcccg aagctggagc tcgaagctgc gctgctattg tccctgctcg tcgtgaaggt      3900
     gctagctaca ctcgacctgg aaattgctga agtcgtgctg aagtcggaca gccaaatcgt      3960
     cctagcgtgg ctaagacggc cacttgacac cttggaagta ttccagcgaa accgagtcgc      4020
     caagatcaac gctctgacca agggtttcac gtgggcatac gtgagaacga atgagaatcc      4080
     agctgatttt gtgtctagag gccagctccc ggcgcctttg agccgcaaca acctgtggtg      4140
     ggaggatacg ccgtccacaa cgaccaccgc agtcgatcct gcaccgatcc tcgaacaaga      4200
     gcttcctggg ttggtggcat ccctgtccaa caccgtcgag tctgagctgc taccagtgtt      4260
     cacgcgcttc agcgacttcc gccacctcca gcgagttgtc gcttacgtct gccgattcat      4320
     ccagaatttg aagagcaaga gagccgggca gcctacctgc agaaccaatt acttgacgat      4380
     ccctgaaacg cgaaaagcac taaagtgcat tgtgagatgt ctgcaagtgc acgccttact      4440
     tgaggactac aattccgtga agcagagtgg agccgcacac cggctggctc ggctagcgcc      4500
     aatactcgac agcgatggct gcttgagagt cgggggccgt atccagaagt caagcctacc      4560
     agaagaagct aaacaccaac tgattctgcc tcgccatccc gttaccgaat cgctgatccg      4620
     ggcgatgcac atcgagaacc tgcatatcgg cccatctgga ctgctggctg caacccgtca      4680
     gaaattctgg ctgttggctg gccgatcgat caccaggaaa atcaccacca agtgcatgtg      4740
     ctgcttccgt gctaaacccc gtggaatcga gcagttcatg ggccaattac cggacgagag      4800
     agtgaacgtg gctgcgccgt tcgaattcac cggcgtggac tatgccggac ctatgttggt      4860
     gaaacaaggg aaatatcgtc cgaaggttgt caaggcatac atcgcggtat ttgtgtgcat      4920
     ggcgaccaag aatgtacacc tggagttggt ctccgagctt accgcagagg ccttcatcgc      4980
     agctcttgaa cgttttatca accgccgtgg catggtccgg aaactgttct ccgataacgg      5040
     aaccaacttc gtcggagctt cagggatgct tcgagacttc taccgcttgc tgtccagcga      5100
     tcttctgctt cgagaacttc atgagcttct gttgcccaag gagattgaat ggagcttcat      5160
     tccaccgcgg gcccccaact ttggtggctt gtgggaggcg ggcgtcaaaa gtgtgaagac      5220
     acacctgaaa aggacattgg tcaacgcaac actaaccttt gaagagatgg ccaccatgct      5280
     gacccacatc gaagccatct tgaactcgcg accgctgtat agcgcctcgg actgccctgg      5340
     agacgccttg ccaatcacgc cagcacactt gcagatcggt agacctcttc aatcggtgcc      5400
     caaaccgtcc tgcagcagcg tgccagataa tcgccttccc cgctggcgct atctggacaa      5460
     actccgcgaa catttctggg accgctggtc tcgggagtac cttaccagct tgcaagtccg      5520
     cggcaagtgg cacaagaaga ctgcaaacgt acggcctggc atggtcgtgc ttctcatcga      5580
     agacaactta ccaccacagt cctggaagct ggccatcgtt atcaagacct atccgggacc      5640
     agaccagcta gttcgagtcg tcgacgtgaa ggtgggcaac aagatcttgc aacgttccat      5700
     ctcaaagctg gcgccactgc ccacggaaga taatgaccag ctgagacaag ttccggaacc      5760
     ttcagggctt gatgaaattc cgagtcttga agaagcttca gcttcgcagt cggggcggag      5820
     aa                                                                     5822
//
ID   BEL-45_CQ-LTR repbase;    DNA;    INV; 368 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_CQ_;
KW   BEL-45_CQ-I; BEL-45_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 244-244 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 368 BP; 106 A; 89 C; 105 G; 68 T; 0 other;
     tgtccgccaa cgcgtccggt ttcgagcatc ttcgagcgtg aaatgaaaaa tcacgacaga        60
     cggcagcact ggttgctgcg attggcgaac cccgccggcg ttgccaaacg tgacagcggc       120
     gaaagacgca acggcgactt cgtctcgacc aaaaagcgcg cgcaaagaag gagagaggag       180
     agaggtagag agaaaattta ctccgttcgc gagcctcgta cggtgaacgt cgcgcagtgt       240
     aaataaaaat cggaatcgaa agagtttttg caaagaaatc gcgtgttatt tctttttccg       300
     aaagcggatt acagtcccgc tagaagcccg aggaaacatt ctcggttgag gacgaagtgg       360
     ccccaaca                                                                368
//
ID   BEL-45_DTa-I repbase;    DNA;    INV; 6356 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   02-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6356
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (02-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~99% identity to each other.
XX
SQ   Sequence 6356 BP; 1853 A; 1356 C; 1388 G; 1759 T; 0 other;
     tggcgccccc gggtggactt taaactatta ataattaaag gcaacaagtg acagtgacac        60
     aaagtgaaaa cacaacaagt gatagcaaac ttgatttgca tttaaaatta ataacaaaac       120
     ccacaaaatc gttgcccgcg gcgagtaaaa agttaaatac atacatagca gctttgctca       180
     atttatcgtg ccggtcgcga aataccctgt taatccgcca gtactgccgc tgccaaggga       240
     tgccctgtga ttgctcgatg tgtaaaagga aagtggaagc tggattaaaa gaccccaacg       300
     cagaacccga ggtatttgtg caaaaaattg aaagctagag ttgttaacaa aacaatttat       360
     ttgtttcttg tcttgtgctg aaaaattgca cctcgctttc aattcttggc acagacgtat       420
     cgatatagta gagctagttg tgcatgcatt atttaattaa attaaataaa aaggaaaaat       480
     tgcaaactta cacatataca gaaaaaataa ataaaattta tattatattt attatataca       540
     tatacacata tacacataca cattacataa cccatttgaa ccgcccttgg atgcaacatt       600
     taatttgtgt tttcttacga aaattattgc aatcactgtc gcccccccca ctacattgtg       660
     ttaaaactcg aaaaattaat agttgggaaa attcatccca gccgctatac ataaccaata       720
     cataggccct catatacaag cagctgcagc ggtgaatttt ttcgttttcg ctttcgcttg       780
     tccgccgcta gcaaagttgt tattgttgta ggatttggtt tggcgcgctg acgattagct       840
     gaccgttaag tgacgcgcta ccctgcattc ggtcgggtat actgatttgc cgtcaccact       900
     attaatttga tactacgtgg tttgatttaa ttaaatattt tcgtcgcttt tgttgtgaat       960
     aatacaacat ttggtaacaa catttttcga acaaatttaa taattataga caaaaattat      1020
     taactctcgt tgtttgtttc gaaatttatt ttcatcactt atacttttta aattaaattt      1080
     attcaattta ataaattgtt gctggatata atttattcta cataattatt tatatataat      1140
     tttttcgtgg cctatatata tttaaattaa tataaaaatg agtccagata agccaaaaaa      1200
     tattgaactt cttgctgacc ttaaaaacaa gctcaaaaag ccagtaaata gcatccgccg      1260
     attaaataat cggctagaag ccggccagat tccgattctg gaagacgaat taaaatgtag      1320
     gctagaaaat ttaaatgatg taattaacaa ggcaaatcaa ttacaagaaa agatagaaga      1380
     tttagatgat ggcgatgagt ttggagaaga gttggaagag ctttccataa caaccaaggc      1440
     aaaagtattg tcgcttatct cggccttgaa gacagctagc gataccaaaa ctcttgggtc      1500
     agcttctgta gtcccaactc gagctcgact tccgaatttg gcattgccga aattcagcgg      1560
     caaatactcg gagtttaaaa atttcatgag cctttttgaa actctagttc atcaagacga      1620
     taacattccc gttattgaaa aatttaatca cttaatctct tgcctttctg gtgaagcttt      1680
     ggggactatc aaggcctacc aagttacaga gagcaattat gagaaagctt tggtcagctt      1740
     gaaaaaagtg tatgataacg aatgtttaat ttttatgaat aatatttcaa cattgtttag      1800
     tcttccgaaa atatcgcaac agtctgcgtc gtctctaagg aatcttatcg ataccgtgtc      1860
     atcgatatac ggttctttgt tatcgatagg agacgatacc aagatttcaa atgcaatgtt      1920
     gatctatctc gtcttgaaca gagtcgaccc agtgaccaaa caaaaatggg aagaacagtt      1980
     agattatgaa agattacctc tttggtccga ttttgaaaaa atgttaaatc gcagatatca      2040
     gcatttatct gctgaagaat cgacgaaacc aaagctagat aaagttacgt cgagcaagcc      2100
     acataatcgt agctcattta catgttcttc gtccaacagt aaatcccagc aaggttgtag      2160
     ctattgcaat gcagacgacc atatcctagc gaactgtggt ccgtttggtc gtctttccgt      2220
     tatgcaaagg tttgactttg taaaatctgc ttcattatgc atcaattgta tgcgaaaggg      2280
     tcacactgtc tcgaaatgca aatttaacaa atgtcgagtt tgtggacgct cgcatcacgt      2340
     tttactgcat agatatacag tttccgagaa cagtttagcg ttgccaccac cccaagagat      2400
     tcttactcct cctttaaatc aagatcagcc ttccacgtca catgttatgc atgcgacatc      2460
     atcggagagg gtgattttgg ccacgtcgat cgtaagtgta cgaaccaaaa acggtgaata      2520
     tattttggcc cgagcacttc ttgactctgg gtcccaaact aactttataa cagaggacct      2580
     tgctcaccgc ttacagatcc gtaaagagga gtcgtgtatc aacttacttg gtattggcga      2640
     gtccaattct caagttaaga aaaaggtaca tacagtggtg aagtcgcgta taaatggtag      2700
     tgagttctca ttcgattttt ggattttaaa atcaatatca ggataccatc ctgaccagtc      2760
     tgttaatatc aatgactgga aaattccaaa gaacctaccc ttagcggacc catatttcta      2820
     caagccacaa agaatagata tgttaatagg agcagaatct tttttcgaat tattagctgt      2880
     tggacaaatt agacaaggtc ccgactttcc aactttgcag aaaaccctcc taggatgggt      2940
     tgtatcagga agatataagg catcttcccc tacagaagtt gtgaaaagtt ttagttgtag      3000
     tgaagagctg ttagtatcta ttgacagcac actacagaag ttttggtcac tggaagaaat      3060
     gccatctcta aagaaaattc tgtcgcctga gcaaaagtta tgtgaagaac actaccggaa      3120
     gactactcag gttttgccat caggtcggtt tgaagtaagg ctgccgttta aatctgatcc      3180
     aaatgggttg ggcaactcct ttgaagttgc aaaacggcgg tttttgtcgc ttgaaagaag      3240
     gttgtctcga gaccctgaca tgaagaaaat gtatttagaa tttatggaag agtacctttc      3300
     cttaggtcat atgtctccta cagataaaat tccttctgct ccacattatg ttatcccaca      3360
     ccaatgcgtt ctgagacccc aaagtacgtc aaccaagtta cgtgtcgttt tcgatgcctc      3420
     ttgtaaatcg tcaactcaga tctctctaaa tgatattttg atggttgggc cgacaatcca      3480
     agatgagttg tactcaacgc tacttcgctt ccggctgcat aggttcgcct tgaccgccga      3540
     tgtaaagaaa atgtatcgcc aagtgatggt aaatgaagcg gataggcagt ttcaacttat      3600
     agtgtggaga agagacccct ctgagtcctt gagattatat aagctcaaca ccgtaacata      3660
     tgggactgga ccagccccat ttctggcaat tcggtgttta aaaaggttaa gcgagtctgc      3720
     caaactttct tttcctagag ctgctgaagt tattggatcc gacttttatg tcgatgacat      3780
     gttaactggt gctgcatgcg tagaggagtt aaagactatt aagtctgaag tgtctcaggt      3840
     tcttcaaact gcaggttttg aattgacaaa gtggttttca aactcacctg acgtcaccgc      3900
     atctgagagc acagctaaat ccatacccat ctcggactca gagtctacaa aggcgttagg      3960
     aatatcgtgg ttgcccaacg aagatgcctt taagttccaa attgacaatg ctgtcatggg      4020
     tctccgagcg acaaaacgga acatactatc ggtgacatcg aagctgtttg accccctcgg      4080
     cttattaagt ccaatagtaa ttagaggaaa gatcctgttg caggaactct ggctcaataa      4140
     gttagattgg gatgagtcga ttccaatgca tttggaaaca gaatggaata tgataaaaaa      4200
     tacactgtct aatttagaag aaatatcaat tcctcggttt gtgcataccg atccgatgtc      4260
     accggtccaa ttacatgcct ttgccgacgc atccttaaga gcttacggag cttgcgtcta      4320
     cattcgtagc aaaactgcag aaggttataa agtatccttg ttgacgtcaa agtcaaaagt      4380
     agcgccgctc aagactaaga ctcttccaag acttgagtta tgtgccgctc accttctcgc      4440
     agatctctgt cacagaatca agcccctatt aaaggtacct atcgaacaaa ttgtttattg      4500
     gtcggactct gaagttacgc ttcattggat ccggtctcat ccgtcttcgt tgtccacatt      4560
     tgtatcgaat agagttgcgg agattcaaga gtggtcaggt gaagctacat ggcggcatgt      4620
     ccccacgaaa cagaacccag cagatatcgt atcaagaggt tgtgacgtcg acgaaatcat      4680
     acagtcgata tggtttactg gaccagcgta tctaacggaa gaagaagaaa actggcccca      4740
     aaatgcacac tttgacctag atgaacaagt cctactgcaa gaatcgagga agactgtggt      4800
     cgggctgacc gctgctgtac aaaagtcgga cttgatagat gtcatcgagg gattttcgtc      4860
     acaccttaaa ctgcttaggg tattcgttta tatgttccgc ttcattagaa aatgcaaaga      4920
     caaaagtaaa gtatttgaaa aaactttgtc acccactgaa tataatgaag cctttttaaa      4980
     aattgtcgag gtattacaaa aacacgagta tcacgaagaa agggaaaaag tccgtaaagg      5040
     ctccagagtt ggcccaagtc ttcagcgatt gaatccattc attcatgaag aaaaggggac      5100
     ttggtgtcac ttttcgttgt tgcgagttgg ggggcgacta gctaacgctc ctatatcata      5160
     cgatgccaag tttccattgt tgttgacgaa acgctcccaa tttgtgcaga gctatgtccg      5220
     gcatctgcac cattctaatt ttcatgttgg tccacgagca cttgtgagtc tccttcgaca      5280
     gcgaatttgg atcgtaaacg ctcaggaggt ctgcagtcag acagttcgat cgtgtatccg      5340
     ctgcttcaag tgcaagcctc gactgatgac gcaaattatg ggaaatttac ccgcagatcg      5400
     tctccgtgct ctccgcccat ttgctatatg tggcgttgat ttttgtggcc ctgtctatac      5460
     aacactgaaa attcgtggta ggcctccgta taagtcctac attgcgctct ttgtttgttt      5520
     cgcgtccaag gcggttcatc tagaagttgt ttcagattta accacagatt cctttttatt      5580
     ggcttttcaa aggttcgttg ggcgccgagg atgtccccaa gtcgtccatt gcgacaacgg      5640
     gacgaacttc gtcggagcca gtcgccactt ccaggccctt cgagagcgga tcgaggagga      5700
     agccgacgcg atacgcgaat tcgcatcaag aagcggatgc gagtttgcgt tcacaccgcc      5760
     tcgggctccg cacatgggcg gactatggga ggcaggtgtc aaaactgcca agaacctact      5820
     cctacgggcg gtgggcagcg cgctcctaag cgcagaagag ctggcgacag tgctcgtggg      5880
     aatcgaggcg gtgatgaact cccgcccgct cggagcgatc agccaggacc caagcgacgg      5940
     agaggcgcta actcccgggc acctgctgac aggcgggccg ctgctcgcca caccagcact      6000
     ccggaccccg gaccaggagg gtctcagctg cttacggcga tggcggcttg tctcgtcagt      6060
     caggcaaatg ttctggcggc gatggtcccg ggaatatgtc ctgggcctac aaattcgggg      6120
     caagtggcac caggagcagc cgaacatcag cgagggagat ctcgtcgtcg tggccgagga      6180
     caaccttccg ccccaacaat ggctcctggg gagaatcatc gccaggcacg caggggagga      6240
     cggcatggtc agggtcgtcg acgttaggac gggcgcagga ggcgtttttc ggcgagccat      6300
     ccataaattg gcgccgcttc ccatttgttg aagcctgaag cgttcaacgg ggccgg          6356
//
ID   BEL-45_DTa-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   02-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-45_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-309
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5706-5706 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 309 BP; 79 A; 52 C; 58 G; 120 T; 0 other;
     tgttgagaga tttttgaatt tgtacttgaa gtttgaagtt tagtgtaagt tagtttagga        60
     cgaaggcggg tgcacaataa aggtctctct cgctctctgc gaattcgccc cgtcttcgtc       120
     aactgtcgtt aagctaggct ctaagaactt tgttaaaata tagtcgtgca atcgttgaaa       180
     ttgatttaga tcgaccacac gtattttctc actctcgttt ttcgctttgc ctaaaattaa       240
     agtttattgc cacaagtttt ttcggttttc ttgtttatat atatttggaa aaactattct       300
     aaattttca                                                               309
//
ID   BEL-46_AA-I repbase;    DNA;    INV; 6638 BP.
XX
AC   supercont1.246;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_AA_;
KW   BEL-46_AA-LTR; BEL-46_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6638
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.246; Positions  164315  157678.
XX
CC   'ACACT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(25..2457,2461..6636)
FT                 /product="BEL-46_AA-I_1p"
FT                 /translation="MPGASKKTGNRRSVIRQLTEEESSETPRCPSCDRPDV
FT                 ADKWMVQCDLCERWFHFSCARVDESVKDRSFACVACALRHGRESTRSIASS
FT                 TSSARRRLELLRLEEEKELQERLLAEQAAAEAALKKKAMEEEMERMKSTMH
FT                 ERLEIAKRYLTKKYEVLQEEEYSNDGRSRKSHSSSRSKLSDVRSWVENHDM
FT                 VLETGFGINGVPTNSMPVTDADPNSISAGSSGNGPPLKTSTKSDVLNEHGV
FT                 GVATGSYNREDIASWGILVPRSGQNAADSVPVPPQSLPTTSGQDSSTPVYE
FT                 TRAARIVNALAATSISPLTASQQGEPLTSNINISSPTASEKSRAELEQELQ
FT                 EVLQQLADLKRSTAGQNRPSSASGNCSGSIVVTTSLGIGTGTSRLHAPLQS
FT                 APVVGREAYIPRSNPIGTQASFTLATNCTTQDTISRSSFLPHWNQMSSSNY
FT                 SSNNQPGFPHYTANFAYPSVSIGVASQQRESNSHWPPFPVGAPSCPYSASE
FT                 RSVHYSINQRSAFPVGASSHPFVTSVPSLPNPIVTPMITCREDNDPPSSGY
FT                 GPNSQQIAARHVVPKELPEFAGDPMDWPLFVSSYSNSTRMCGYTNDENLMR
FT                 LQRCLKGNAKEAVRGHLFHPSSVPQIMTTLETLYGRPELIVKCLMAKVYST
FT                 PAPKSDKLETLINFGLVVQNLCSQLQSMGMETHLSNPSLLQELVDKLPANV
FT                 KLDWAMYQRHLPVIDLRAFGAYMTTIVSAASNVTLYVEPPRKLEKSKGFVN
FT                 THAAEPELRADSEAKKEEVGVTATYQPKPCLMCKELGHKVRDCNSFKQLSL
FT                 ENRWKTAHQSLCRRCLIPHGKWPCKATTCGIESCEARHHKLLHPGEPQAST
FT                 TGVAVPTRSQSTAVPSATVNVHRQLPCPVLFRILPVTLHGKHTSINTLAFL
FT                 DDGSSHTLVEKDLANELGVEGEFEPLCLQWTSNIKRTEKYSQNVQLEIAAI
FT                 GKTRKHTLEYVRTVDSLNLPPQCLNYEELARKFDYLKGLPITSYSTAAPRI
FT                 LIGADNAKLLLTLKKREGKYSEPVAAKTRIGWTIYGKAEGIPVSSEHRLLH
FT                 VYVHSADQQLHDAVKDFFSIENVGVALVPQVEADEDRRSREILERTTIRIP
FT                 SGRFQTGLLWKFDYFEFPESRFVAEKRLTCLERSLSRKPEVYANVRQQIHD
FT                 YQTKGYAHKLTEEESNSSYPRKVWYLPLGVVQNLNKPGKIRVVWDAAAKAS
FT                 GVSLNSMLLKGPDLLTSLPSVLFRFRQREVGITGDIKEMFHQILIQPEDRQ
FT                 AQRFLWRNHPEDTVEEYVMDVATFGATCSPCSAQYVKNKNAEEWKDVYPEA
FT                 AAAIVENTYVDDYANSSDTVEEAVRIALEVKQIHASAGFEIRNWLSNSKQV
FT                 LRRVGGQGSVTSKCFAVEKLTDSERVLGMTWLPESDVFTFALKFRADVLQL
FT                 LTEEIIPTKRQVLRVVMSIFDPLGLVAPFVVHGKCLIQDIWRAGVDWDERI
FT                 PRELLIQWRRWVEVLHHLNQVQVPRCYFPGYDSHSFRSLELHVFVDASEAA
FT                 YACAAYFRIVDLGQVRCALVSAKTKVAPLKPMSIPRLELQAAVIGVRLMKS
FT                 VQENHTLPINRRVIWGDSKTVQSWIRSDQRKYRQFVAYRISEILNETNLEE
FT                 WRWVPTRFNVADEATKWGKGPCFEPESRWFIGPEFLYNHESEWPKQEFSPP
FT                 DTPEEMRSVHAHHRVAQESLIDYHRFSKYQRLLRTVCYVLRFVGHCRKRTD
FT                 YVECRDASVLSKAELQNAELALWKLVQAEAFPEEMSTIRKNQELPLEQAKR
FT                 LAKSSPLSKLSVFLDKNGVLRIESRIGSAKFVEYGAKYPVILPKQHRFTEL
FT                 LVEYFHQRYAHGYRETVANEIRQLFYIPSLRTIVRKVAKKCAWCVVYRAVP
FT                 KAPRMAPLPAARVTPYVRPFTFIGIDYCGPFLIRIGRNNVKRWVVLITCLT
FT                 VRAVHLEVASSMSSESCKLAIRRFIARRGAPQEIYSDNGTNFVGVSKELRA
FT                 ESVTVNRTLAETFTNRDTQWRFNPPAAPHMGGVWERLVRSVKSSLETLSVS
FT                 RTPDEETFRTLLIEVEGIVNSRPLTFLPLESEDDEALTPNHFLMLSSSGVL
FT                 QPPQAPVENSGRTLRANWNQLRSLMDEFWTKWIKGYLPTICRRTKWFDDTK
FT                 PVKIGDLVVIVDEGVRNSWTRGKVVRTIPGNDGRIRRIDVQTVSGVMQRPV
FT                 TKVAVLDVAIEGIAADDQQQYGSG"
XX
SQ   Sequence 6638 BP; 1823 A; 1583 C; 1702 G; 1530 T; 0 other;
     aactttaagg tttataacca aacaatgcca ggtgcctcga agaagaccgg caatcgtcgc        60
     agtgtcatcc gacagctgac ggaggaagaa agctcagaga cccctcgttg tccgtcttgc       120
     gatcgtccag atgtggctga taaatggatg gtgcagtgtg acctgtgtga gagatggttc       180
     cacttctctt gtgcccgagt tgatgaaagt gttaaagacc gcagctttgc gtgtgttgcc       240
     tgtgcactcc gacacggccg agaatccacc agatcgattg cgtccagtac cagctctgca       300
     aggagacggc tcgagcttct tcgattagaa gaagaaaagg aactgcagga aaggctccta       360
     gcagaacagg cggctgccga agctgctctc aagaagaagg ccatggagga ggaaatggag       420
     cgaatgaagt cgacaatgca tgagaggcta gaaatagcga agcgttacct cacgaagaag       480
     tacgaagttc tgcaggagga agaatattca aacgacggta gaagccggaa aagtcattcc       540
     agctctcgca gcaagctcag cgacgtgcga agttgggtcg agaatcatga catggtcttg       600
     gaaacaggat tcgggatcaa cggagtcccc accaattcca tgcccgtcac tgatgctgac       660
     cccaacagca tatccgccgg aagctcggga aatgggccgc ctctaaaaac atctaccaag       720
     tctgacgtcc tcaatgagca cggagtaggt gtagctactg gttcgtacaa tcgggaggat       780
     attgcatcgt ggggaatact ggtgccccgt tctggacaga acgcagcaga ttcggtgcct       840
     gttccacccc aatcgctacc aacaacttct ggtcaagatt ccagcacgcc ggtatatgag       900
     acacgcgctg cccggatcgt taatgcactt gcagcaacta gcatctcacc gctcacagcg       960
     tcacagcaag gagagccgtt gacgtccaat atcaatatat cttcacccac agccagtgag      1020
     aagtctagag cggaactgga gcaggagctt caggaagtgc ttcagcaatt agcggacctg      1080
     aagcgatcga cggctggcca aaatcgtccg agttctgcct ccgggaactg cagtggttct      1140
     attgtggtta caactagtct aggaataggc acaggtacgt caaggttgca tgctccgtta      1200
     caatcggccc cagtagtagg tagagaggca tatattccgc gcagtaatcc aataggaact      1260
     caggctagct ttactttagc aacaaattgt accacgcaag acactatctc aaggtccagc      1320
     tttttacccc actggaacca aatgagttcg tcaaactatt cgtcaaataa ccagccagga      1380
     tttccccact acactgctaa ctttgcgtac ccgtccgttt ccatcggcgt tgcgtcacaa      1440
     caacgtgaat caaattctca ttggccgcct tttccggttg gtgctccttc gtgcccgtac      1500
     agtgcaagtg aaagaagtgt tcattattcg atcaaccaac gatcggcatt tccggtcggt      1560
     gcttcatctc atccattcgt cacaagtgtt ccgagtctgc ctaatcccat tgtcactccg      1620
     atgattacgt gtagagaaga caatgacccg ccatcttcag ggtatgggcc gaattctcag      1680
     caaatcgccg cgagacacgt cgtgcctaag gagttaccag aattcgccgg ggatcccatg      1740
     gactggccgc tatttgtgag tagttacagc aactcgacgc gcatgtgtgg gtacaccaac      1800
     gatgaaaacc tcatgcgact tcaacgttgt ctgaagggga atgcgaaaga ggcagttaga      1860
     ggtcatctgt tccatccatc gtcagtacca caaattatga ctaccctgga gacgctgtac      1920
     ggtcgcccgg agttgattgt gaagtgtttg atggctaaag tgtactcaac cccggcgcca      1980
     aaatcggaca agttggagac gctcatcaat ttcggtcttg tagtgcagaa tctctgcagc      2040
     cagttgcagt ccatgggcat ggaaactcat ttatccaatc cttcactact tcaggaactg      2100
     gtagacaagc tgccggccaa cgtcaagctg gattgggcca tgtaccaacg acatctacct      2160
     gtaattgact tacgcgcttt cggcgcatac atgacgacaa ttgtgtctgc agcaagcaac      2220
     gttacgctct atgttgagcc tccaagaaag ctagagaagt ctaaaggttt cgtcaacacc      2280
     catgcagcgg aacctgaact gagagctgat agtgaagcta aaaaggagga agtaggtgtg      2340
     actgcaacat accaaccaaa gccttgccta atgtgcaaag agcttgggca caaagtaagg      2400
     gattgcaaca gtttcaagca attgtcgcta gagaatcgat ggaagaccgc tcatcagtaa      2460
     agtctttgcc gtcgctgctt gattccccac ggaaaatggc cgtgcaaggc tacgacttgt      2520
     ggcatagaaa gttgcgaagc acgtcatcac aagctacttc accctggcga accccaagct      2580
     tcaactacag gagtagcagt accaacgaga agccaatcta cagcagtgcc atcggcgacc      2640
     gtgaacgttc accgacagct cccatgtccg gttcttttcc ggatacttcc tgtaactctt      2700
     catggaaaac acacgtcgat taatactttg gcatttctcg atgacggttc atcgcacaca      2760
     cttgtcgaga aggatttggc taacgagcta ggtgttgaag gtgaattcga acctctatgc      2820
     ttacagtgga ctagcaacat caaacgaacg gaaaaatatt cgcagaacgt ccagttagaa      2880
     atcgctgcta ttggcaaaac tcgcaagcac acgttggaat atgtgcgaac ggttgacagt      2940
     ttaaacctcc caccacaatg tttgaactat gaagagctgg cgcgtaagtt cgactatctc      3000
     aaggggcttc caatcaccag ctattcgacg gcggctcctc gcatcttaat cggtgccgac      3060
     aatgcaaagc tgttgctgac attgaagaaa cgagagggga agtacagcga gcctgttgcc      3120
     gcgaaaactc gaattggatg gaccatttac ggcaaagcgg aaggtatacc tgtttcgtct      3180
     gagcatcgtc ttctccatgt ttatgttcat tcggccgatc agcagttgca tgacgcagtg      3240
     aaggactttt tctctataga gaatgttggc gtagccttag ttccacaagt tgaagctgat      3300
     gaggaccgta gatcacgtga gattctggaa cgtacaacta ttcgcattcc atccggacga      3360
     tttcaaacag gacttttatg gaaattcgac tattttgaat tcccagaaag ccgattcgtg      3420
     gcagaaaagc gactgacgtg tttggagcga agtttgtcga ggaaaccaga agtctacgct      3480
     aacgttaggc agcagattca cgactaccaa accaagggct acgcacacaa actaacagaa      3540
     gaagaatcga atagcagtta tccaaggaag gtctggtact tgccgttagg agtggttcag      3600
     aatctgaaca aacccggaaa aattcgagtt gtgtgggatg cagctgccaa ggcgagtggt      3660
     gtttcattaa actccatgct actgaagggc ccggatctcc tcacatcgct gccatccgtg      3720
     ttattccgtt ttcgtcagcg agaagtggga atcacgggag atataaagga aatgtttcac      3780
     cagatcctga ttcaacctga agatcgacaa gctcaacgct tcttgtggcg taatcatcca      3840
     gaagatacag tagaagaata cgtcatggac gtagcaacgt ttggggcaac atgttcaccg      3900
     tgctctgccc aatacgttaa aaataaaaat gccgaagagt ggaaagatgt ctacccggaa      3960
     gcagctgcgg ccatagtgga aaatacctac gtagacgatt acgcgaacag ttccgataca      4020
     gtagaagaag ctgttcgcat agcactcgag gtgaagcaga tacatgccag tgctggtttc      4080
     gaaatccgaa attggctctc aaattccaaa caagttcttc gacgggtcgg gggacaggga      4140
     tcggtaacat ccaaatgctt tgctgtggag aagttgaccg attcagaacg agttttggga      4200
     atgacctggt taccagaaag cgacgtcttc acgtttgctc taaagtttcg agccgacgtt      4260
     ctccaactgt tgacggaaga gattatacca acgaagcgcc aggtccttag agtagtaatg      4320
     agtatttttg atccacttgg actcgtagca ccatttgttg ttcacggaaa gtgcctaatt      4380
     caggatatct ggcgtgccgg tgtggattgg gacgagagaa ttcctcgcga gttgttgatt      4440
     cagtggcggc gttgggtgga ggtgcttcat catctcaacc aggtgcaggt acctcgctgc      4500
     tactttccgg gatatgattc ccatagtttt cgcagcttgg aactccatgt atttgtggac      4560
     gcaagtgagg cagcatatgc atgcgcagct tacttccgaa tagtcgacct tgggcaggtg      4620
     agatgtgcac tcgtttccgc taaaacaaaa gtagcaccac taaaaccaat gtcaatccct      4680
     cggctagagc tacaggctgc cgttatcggt gtacgactaa tgaaatcggt acaggagaac      4740
     cacacgctac caatcaaccg tcgtgtcatc tggggtgact ctaaaacagt acaatcctgg      4800
     atccgatcag accagcggaa gtatcgacag tttgtagcgt acagaatcag cgaaattctt      4860
     aacgaaacaa acttggaaga atggagatgg gtcccaacgc gatttaacgt agcggatgaa      4920
     gccacaaagt ggggcaaagg tccctgtttt gaacccgaga gtcgttggtt tatcggaccc      4980
     gaatttcttt acaatcatga atcagagtgg ccgaagcaag agttttcgcc accggatact      5040
     ccagaagaaa tgcgatccgt tcatgctcac catcgtgttg ctcaggaatc tttgatcgac      5100
     taccatcgct tctccaaata tcaacggctg ctgcgaacgg tatgttacgt tcttcgcttc      5160
     gttggacact gtcggaaaag aactgactac gttgagtgcc gtgatgctag cgtactctca      5220
     aaagcggaac tacagaatgc agaactcgca ctttggaagt tggtgcaagc tgaagcgttt      5280
     cccgaagaaa tgtcaacgat acgcaaaaac caggagttac cactggaaca agcaaaacgg      5340
     ttggcaaaga gcagtccact gagcaagttg tcagtgtttc tcgacaaaaa tggagtcctg      5400
     cgtattgaaa gtcggattgg cagcgcaaaa ttcgtcgaat atggagcgaa atatcccgtc      5460
     atccttccga aacagcatcg atttaccgag ttgcttgtag agtatttcca ccagcgatac      5520
     gctcatggat atagagaaac agtggccaac gaaatacgtc agcttttcta cattcccagc      5580
     ttaaggacta tagttcgaaa ggtagccaag aaatgtgcgt ggtgtgttgt gtaccgagct      5640
     gttcccaaag cgccgcgaat ggcacccctt cccgccgcaa gagtgactcc gtatgttcgt      5700
     ccgtttacgt tcattggcat cgattattgt gggccttttc tgatacgcat cggaaggaac      5760
     aatgtgaagc gttgggtcgt actcatcacc tgtttgacag tacgagccgt acatctggag      5820
     gtggccagca gtatgtcgag cgagtcgtgc aaactggcaa tcaggcggtt catagccaga      5880
     cgaggtgccc cgcaggagat atacagtgac aacgggacga attttgtcgg agtaagcaag      5940
     gagttgcgag cagaatcagt gacggtcaat cgtaccttgg ccgaaacatt caccaaccgt      6000
     gacacgcaat ggcgattcaa ccccccggcg gcccctcaca tgggtggtgt atgggaacgc      6060
     ctggtacgat cggtaaaatc ttcactggaa actctttcgg ttagcagaac accggatgag      6120
     gagacattcc gaacgctgtt gatcgaggtc gaaggtatag tcaactccag gcctttgaca      6180
     ttcttaccat tggagtcgga agacgatgaa gcgttgacac ctaaccactt cctcatgcta      6240
     agctcgagtg gtgtacttca gccgccacag gctccagtgg aaaatagcgg acgaacactt      6300
     agagcaaact ggaaccagtt acgaagcctg atggacgagt tttggaccaa gtggattaag      6360
     ggatacctgc caaccatctg tcgccgcacc aaatggttcg acgacaccaa acccgttaag      6420
     attggagacc tggtggtgat agtcgatgaa ggtgtgcgaa acagctggac tcgtggaaaa      6480
     gttgttagga cgattcctgg caacgatggt agaatacgca gaatagatgt acagactgtt      6540
     agcggagtga tgcagcgacc cgttacaaaa gtggccgtgc ttgatgtggc tattgaaggt      6600
     atagctgcgg atgaccagca gcaatacggg tcggggaa                              6638
//
ID   BEL-46_AA-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   supercont1.246;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_AA_;
KW   BEL-46_AA-I; BEL-46_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-485
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.246; Positions  157677  157193.
XX
SQ   Sequence 485 BP; 190 A; 98 C; 71 G; 126 T; 0 other;
     tgtgcaggat tgagcccact gtacgcacta ccactgctcc acgggataaa atctcaacct        60
     tggataccag caccatgctc agcatagctg tcagtggtat tatacaaaac aaaaacagaa       120
     atactaaacg tttgaacgtg aatttcatct ctattagcta ccttacttat taatctaaaa       180
     tactttaaaa ccgtgttaat ttagcacatt tgaattgtaa gtagacaaag attaaaaact       240
     attgaactaa aattaactaa actaattgta caacacagaa aattgaaatt gattgcggaa       300
     aacaggaaga ggacaaacaa accaaattag ggactataaa cgtaagtgac tataaacaga       360
     ctatgatata tgcaattaac taattctaat aaacataccc gtagcttaaa gcattcactc       420
     aacaaacaca cgagttttgc taaaaaggcg tccttaattg tcttgctgtc ccaaccaccg       480
     caaca                                                                   485
//
ID   BEL-46_AnFu-I repbase;    DNA;    INV; 6136 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6136
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 693-693 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           778..6102
FT                 /product="BEL-46_AnFu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and DUF5641."
FT                 /translation="MSKRVTRSTTSANIAPKDKAVPPSKEREPEEVKSVMT
FT                 NASSNKMALAMKKLQEEQEILEEVVQRKAELKMQALQRKYELLEAMTDPDP
FT                 DLASSEHFSRLDDRVHHWVNETGLTLLNAAEKQNEPSCEKKMSSPIAAHDQ
FT                 HQTINVDHKKEFEITRSQAAARKVVSVDLPKFDGSSESWPLFIATVRNTTR
FT                 MCGYSDEENMVRLQKALKGKAYDAVKPMMMNPENFEEALSTLKMLFGQPER
FT                 VIHQLLEKISALPKIREHRFDQIIDFAVAVKNYKATVEACGLEEYMYNVTL
FT                 LHQLVLKLPPNLQSNWAEYKGSSATSNLSVFSTWLYARASALSTIVMPGPS
FT                 IQPPSENARQRNSHLHTHHSNNSSVGIQAARSKFSCFLCSNQCESLAKCEK
FT                 FRQLPVRERWSTVRNARVCRICLGKHKRPCVAARCGRNGCSYNHHILLHDD
FT                 DFRAGLRLREGQPTSPTVVNNEMGCNNHQALTTSTIMRYVPVVLSGPRGEL
FT                 QTFAFLDEGSDVTLIDKEVADQLGLIGTHLPLYLRWTGDTKREELDSRVVD
FT                 LVIKGIPNRKSFSLSGVRTVTHLELPQQSVDMSELSHNYGHLRGLPLMSYR
FT                 NAKPPILLGICHAHLGLPLKTREGKPYHPVATKTRLGWCVGGCLGNEKNQT
FT                 VYSANVHLCQDHCDEEVHNAMKRYFAIDSHGISQPGKEIMSKENERALSML
FT                 EKQTIFNGERYETGLLWRFDVNILPNNKEMAWQRHRSMQSKMNKDPLLKDM
FT                 LQKKIISYIEKDYVRKLSAKEENDVKWLLPVFPVQNVNKPGKIRLVWDAAA
FT                 KFKGQSLNSVLLKGPDLMCSLWGILLRFRLHPIGLTGDICEMFHQIRIREE
FT                 DQLHQCFLWPGADGETVTYAMKVMTFGACCSPSTAQYVKNVNAARFKDQYP
FT                 SAYNAITQSHYVDDLLVSVKTSEEAIKLATEVREIHGDGGFRIRNWLSNSK
FT                 QVLKALEAEDTEKKDMSPSDDDSPQKVLGMYWNTTTDYFTYKINYNNFPQQ
FT                 MMKGDRRPTKRELLRVLMSIYDPIGLISHFLMYLKALLQDIWKSGVAWDDA
FT                 IGDTEFENWLLWLKVLPQIENVQIPRCYSVDFPLHQADDIQLHTFVDAGAT
FT                 GMAAIVFLRIKRDEVVNCAIVASKTKVAPLKLVSVPRLELQAALMGTRLAK
FT                 ATLDELKIEVAKKVYWTDSRDVLCWLKSDHRRYSQFVGFRVTEIQESTELN
FT                 EWRYVPSKMNVADDATKRKKVPDFSDCSRWFNGPPFLYEAEKEWPQYNVTK
FT                 EPTEEEKLHVHTHHSVKTPIFSLHEFSSWSRLLRIVAWVKRYIENVRRKAK
FT                 KEGIRQGPLSSDELQAAEWYILRSAQQECFPAEYSILLSGKSLPKSSKLYT
FT                 LIPELDDHGVMRMRTRIAACQYATEDAKRPIIMSRHHRATELIVATYHSKY
FT                 HHHNHETVINEVRQRYQIFGLRACYNAVRRKCQRCKLDKAIPHPPPMADLP
FT                 PCRLEAFSRPFTHTGIDFFGPIEVTFGRRCEKRWVMLATCLTVRAIHLEVV
FT                 HSLSTTSCILAIRNFIARRGQPRTFYSDRGTNFVGAKRELESIKAKIDSDI
FT                 IMREFTTNDTEWVLNPPLSPHMGGSWERQVRTVKKNLLAVTSLKKLSDETL
FT                 LNFLIEVEQTVNAHPLTHVPVDDDSAPALTPNHFLLGSSNGIKPLSRLNET
FT                 GSALKQNWQTTQILANLFWKRWVSDYLPEITRRSKWFQEVKPIEVGDIVLI
FT                 VDDKLPRNCWPKGRVVDTTPGRDGRVRSATVQTARGVYVRPAAKIAVLDIL
FT                 RESE"
XX
SQ   Sequence 6136 BP; 1847 A; 1334 C; 1482 G; 1473 T; 0 other;
     ttataaattt tttattgtga atcgttcgct atcgagtgaa aagttctgct tacgtgcgca        60
     agtgagaagt acgatctcag gattagcggg aaagtgaaca acccgaccga gcgatgagcc       120
     gttgggaaga acaatagcct tctagaatgt gatgaaaagt ttcgaccgag cgatgagccg       180
     tcgaatgaga aagcgttctt agagaagaaa ggatattgtc tggtccgagt gctgaaccgt       240
     ccagagtgtt cgaagcgttc ctgaagaatc gaaaaagcgt attttcctga aaatatacac       300
     gtgtaaccgt gcgtgaacgc aaaaagacat attgtgcttc acgatcaaag aagtttgaga       360
     attgtttctg gtccgagtga tgaaccgtcc agaacattcg gagcgtccac aagcgtcctg       420
     aacgtgcgcg atcgtgttta aacgtgtttc cttgcaaacc tttgtacttc gtttgggtac       480
     cgttctgaga acgtagtgag agtgagaccg agcgatgagc cgtcgagttg tcgagcgttc       540
     tgagaatttt agtaacattg tttgatccga gtgctgaacc atccagagag ttccgagcgt       600
     tcctgaagga aaaggcgcgt tttgtgagac acacacacta acaccagttg agttgaaaac       660
     gccatcttgt gttttaagaa agaacaataa tcaaacgtgc gacgcgtggt ttggttttac       720
     gtgcgttcga gaatagagtg agttttcgtt cgaactggaa acaaggttac tccaaaaatg       780
     tctaaacgag tgacccggag cacgacgagt gctaacatcg ctccgaaaga caaagctgtt       840
     cctccttcaa aagaaaggga accagaagaa gtgaaatccg tgatgacgaa cgcgtcatcg       900
     aacaaaatgg cgttggccat gaaaaaactc caggaagaac aagaaattct ggaagaagtt       960
     gtgcaacgga aagcggagtt gaaaatgcaa gccctccaac gcaagtacga acttcttgaa      1020
     gcaatgaccg atcctgatcc tgatttggct tccagtgagc atttcagccg actcgacgat      1080
     agagtgcacc attgggttaa cgaaacagga ttaaccctct tgaacgccgc cgagaaacaa      1140
     aatgagccat cttgcgaaaa gaagatgtcg tcacccatag ctgcacatga tcagcatcaa      1200
     actattaatg ttgaccacaa aaaggaattt gagattactc gttcccaggc ggctgcgcgt      1260
     aaggttgttt ctgtagacct gccaaaattc gacggaagtt ccgaatcctg gcccctcttc      1320
     atagctacag tgagaaacac gacaagaatg tgtggttatt ccgatgagga aaatatggtt      1380
     cgcttgcaaa aggctctcaa aggcaaggct tatgacgcag tcaagcctat gatgatgaac      1440
     ccagagaatt tcgaagaagc cttaagcacg cttaaaatgt tgttcggcca accggagcgt      1500
     gttattcatc agttgttgga aaaaatatca gcacttccaa aaatccgtga acatcgattc      1560
     gaccaaatca tcgactttgc ggttgctgta aaaaactaca aagctactgt ggaagcatgc      1620
     ggactggaag agtacatgta caacgtcacc ctgctgcacc agcttgtgtt gaagctgcca      1680
     cctaacctcc aatccaactg ggccgaatac aagggtagtt cggctacatc gaatctatcg      1740
     gtgttcagca cgtggctgta tgcgagggca agcgccttga gtaccatcgt catgcctgga      1800
     ccaagtattc aaccgccaag tgaaaacgcc cgccagagga acagtcatct ccatactcat      1860
     cacagcaaca atagtagcgt gggtatacaa gctgccagat caaagttttc ttgttttctt      1920
     tgtagcaacc aatgcgagtc tctagcgaaa tgtgagaaat tccgacaact gcccgttcgt      1980
     gaacgctggt cgacggttcg gaacgcaagg gtgtgtagga tctgcctggg aaaacacaaa      2040
     agaccttgcg tagcagcacg atgtggaagg aatggttgta gctataatca tcacatcctt      2100
     cttcacgacg atgattttcg agctggatta cgtttgcgag aagggcaacc aacatcaccg      2160
     acagtcgtca acaacgaaat gggctgtaat aaccatcagg cactaacgac atccacgatc      2220
     atgcgatatg ttccagtcgt gctatctggt cctaggggcg agttgcagac cttcgcgttt      2280
     ctagatgagg gatcggatgt aacactcatt gacaaggaag tagccgacca actgggttta      2340
     attggtactc atttaccttt atatttacgt tggactggag atactaagag ggaagagttg      2400
     gactctcgcg ttgttgattt ggtcataaaa gggattccta acaggaagag tttctctctt      2460
     agcggagttc gtacagtgac acaccttgaa ctaccacaac agagtgtaga catgtcggag      2520
     ctatcccata attatggaca cttgcgaggt ttgcctctaa tgtcttaccg caacgctaaa      2580
     ccaccaattc ttctgggtat atgccatgct catttgggcc taccattgaa gacaagagaa      2640
     ggaaagccat accatccggt tgctactaaa actcgattgg gttggtgtgt aggaggctgt      2700
     ttgggaaatg aaaagaacca gaccgtatac tctgccaacg tacatttatg ccaagaccat      2760
     tgcgacgaag aggttcataa cgcgatgaag agatatttcg ctattgacag tcatggaata      2820
     tcacaaccag gaaaagagat catgtctaaa gagaatgaga gagctttatc tatgttggag      2880
     aaacaaacca ttttcaacgg tgaacgatat gagactggac ttttgtggcg cttcgatgtg      2940
     aatatcctcc ctaataacaa agaaatggcc tggcaacgtc atcgaagtat gcaaagtaaa      3000
     atgaacaaag atccgctctt gaaagatatg ttacagaaaa aaatcatatc atacatcgaa      3060
     aaggattatg ttcgcaagct ttcggccaaa gaagaaaatg atgtaaagtg gcttttacca      3120
     gtatttcctg tgcagaacgt gaataagcca ggaaagatta gattagtatg ggatgctgct      3180
     gcaaagttta agggtcagtc tcttaattcc gttcttctta aaggacccga tctcatgtgc      3240
     tctctctggg gaattttgtt aagattcaga ttacatccga ttggacttac aggagacata      3300
     tgcgaaatgt ttcaccaaat tcgcatacgg gaagaagacc agctacatca atgtttccta      3360
     tggcctgggg cagatggaga aacagtcacc tacgccatga aagtgatgac ctttggcgct      3420
     tgttgttcac ctagtacggc gcaatatgta aaaaatgtca acgcagccag attcaaggac      3480
     caatatccca gtgcttataa cgcgataaca cagtctcact atgtggatga tctcttggta      3540
     agcgttaaaa catctgaaga ggccattaaa cttgccaccg aagtgaggga aatccatggc      3600
     gatggtggat ttcggattcg aaactggttg agcaattcca aacaagtgtt gaaagcgctc      3660
     gaagccgagg atactgagaa gaaagatatg agcccttcgg atgatgattc tccacaaaag      3720
     gtattgggaa tgtactggaa tacaacgacg gattatttca cgtacaaaat aaattataac      3780
     aatttcccac aacagatgat gaagggggat agacgaccca caaaacgaga attgcttcgc      3840
     gtactaatgt cgatatacga ccccataggc ctgatatctc attttttgat gtatttgaaa      3900
     gccctgctac aggatatttg gaaatcagga gtagcctggg acgatgccat cggggataca      3960
     gaatttgaga attggttact atggctgaag gttcttccgc aaatagaaaa cgtgcaaatt      4020
     cctcgatgtt atagcgtgga ctttcctctt caccaagcag acgacataca actgcatacg      4080
     tttgtggacg ctggagctac tggaatggct gccattgttt ttctgaggat aaaaagggac      4140
     gaagttgtca actgcgccat cgttgcatcg aagacaaaag tcgcgccctt gaagcttgtt      4200
     tcagtaccac gtttagaact gcaagcggcg ctgatgggaa cccgccttgc gaaagcaact      4260
     ctagacgaac tgaagatcga ggtcgctaag aaagtttatt ggactgattc aagggacgtc      4320
     ctatgttggc ttaagtcaga ccatagaaga tacagccaat ttgttggttt ccgagtcaca      4380
     gagattcaag aatcaacaga actcaacgag tggcgatatg tgcccagcaa gatgaacgtt      4440
     gcggatgacg cgactaagag gaagaaagtg ccagatttct ctgactgtag taggtggttc      4500
     aatggcccgc catttttgta tgaagcggaa aaagagtggc cacaatataa cgtcactaaa      4560
     gagcccacag aagaagaaaa gctgcatgta catactcatc attcagtgaa aactccaata      4620
     ttcagcctac atgaattttc cagctggtcc cggctactcc gcattgtggc ttgggtcaaa      4680
     agatacatag aaaatgtgcg aaggaaggct aaaaaagaag gtatcagaca agggccactc      4740
     tcgagcgatg aactccaggc agctgaatgg tatatcctac gtagcgctca acaagagtgt      4800
     tttcctgcgg agtatagtat cctgttatcg ggaaagtcgc ttccgaagag cagcaagctc      4860
     tatacactga tcccggaact agacgatcac ggagtgatgc gaatgcggac acgcattgct      4920
     gcatgtcaat atgcaactga agacgctaag cgacccatca taatgtcgcg ccatcatcgt      4980
     gccacagaat taatagtagc cacttaccat tccaaatatc accatcataa ccatgaaaca      5040
     gtaatcaacg aggtgcgaca gagatatcaa atatttggat tgagagcttg ctacaacgca      5100
     gttcgtcgaa agtgtcaacg gtgtaagctg gataaagcaa ttcctcatcc accaccaatg      5160
     gcagatcttc ccccatgccg actcgaagcc ttttcacgcc ctttcaccca cacggggata      5220
     gacttctttg gtcctataga agtcacattt ggaagacggt gtgagaagcg ttgggttatg      5280
     ctagcgacat gtttaacagt acgtgctatc cacttagagg tcgtccactc cctatctaca      5340
     acgtcctgca tacttgcaat acgcaatttc attgctcgac gtggacaacc tcgaaccttc      5400
     tatagcgacc gtggaaccaa ctttgttgga gcgaagagag agttggaaag catcaaagca      5460
     aaaatcgaca gcgacattat aatgcgagag tttacaacta acgacacgga gtgggtgtta      5520
     aatcccccgc ttagtccgca catgggtgga agctgggaga gacaagtaag aactgtgaag      5580
     aaaaatttac tggctgttac gtctctgaaa aaactctccg atgagacttt gctcaacttt      5640
     cttattgaag ttgagcaaac cgtaaatgct catcctctta ctcatgtccc agtggacgac      5700
     gactcagccc cagctttgac gccgaaccac ttcctcctgg gatcctctaa tggtatcaag      5760
     cctctttcta gattgaacga aaccgggtcg gcgttgaaac aaaattggca aacaacacag      5820
     atcttggcca atctgttttg gaagaggtgg gtcagcgatt acctaccgga aatcactcgg      5880
     cgatcgaaat ggttccagga ggtaaaacca atagaagttg gagatattgt gctcatcgtg      5940
     gacgacaaac taccccgcaa ctgttggccg aaaggaaggg ttgtagacac cacaccaggt      6000
     cgcgacggac gtgtacgatc agcgacggtg cagacagccc gcggtgtcta tgtacgacca      6060
     gccgcaaaaa tagccgtact ggacatcctg cgcgaatcgg agtaaaggaa ctcgtggttc      6120
     ctgtactggg ggggag                                                      6136
//
ID   BEL-46_AnFu-LTR repbase;    DNA;    INV; 260 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-260
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 748-748 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 260 BP; 100 A; 47 C; 56 G; 57 T; 0 other;
     tgttgacaat atgtcaagcg ctcatgtcca gcgacggacc agggtgggac ccgagcggtt        60
     ttgacagcgc agaacacgag tagaaaaaga acagcgaacg ggaacggagc taagcaaaaa       120
     gcactaaaaa atttatcatc attcacactt cgacatagac acggaaattg aataaaagaa       180
     agtgtagaac atcatgatta agtttttgca ttaaaatcct ttagaatcag taaaatcagt       240
     taacgcgtaa attgttaaca                                                   260
//
ID   BEL-46_CQ-I repbase;    DNA;    INV; 3054 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_CQ_;
KW   BEL-46_CQ-LTR; BEL-46_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3054
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 245-245 (2011).
XX
DR   [2] (Consensus)
XX
CC   'CTTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           352..3054
FT                 /product="BEL-46_CQ-I_1p"
FT                 /translation="MWRSFLKLPTEPESEEEKKPVVEVLVPSPVKPLTPKK
FT                 LWEKTKKAEMADGEVKVLSKKRSQVKGKLTRILHAVQPSTQPGALPGVQPR
FT                 EADVSPPQLRVHQRNVEKYYGEFCEIHDKILDVVEEDEGAKQQDAKWLEFE
FT                 QLYNRTLVALEMLLTAHSGPAVSAQAVLPASQAAQQVIVHQQALRAPLPTF
FT                 DGRYENWAKFKAMFQDLMRSSSDCDAVKLYHLDKALVGEAEGKIDLRTIQD
FT                 NNYQGAWKELEEQYENTRLIIDLHIQGILQLKKMDKRSSKELRDVVERCSR
FT                 HVEGLRFHKQELLGVSELIVVNILASALDRETRELWEATIEKGELPTYQAT
FT                 VDFLRKRCHILERCELSDLEASAVTPTVPKMPSSTKPSVNVFAAATTTSEV
FT                 VCEFCSGNHPNYRCSAFCSMSIPERLEKVREARACYNCLRIGHLVKKCPSV
FT                 WTCKCGERHHNLLHMNLPSEQAPPKFEAVPQSSPTVVQAPSNMNSADSPEQ
FT                 TTSCCNSGLLQTSRPVLLQTAIVNVVDKHGRLHPCRTLLDSGSQAHILSAA
FT                 MARKLGLPLTKCNVTVIGANAVKTPARKSVSLNFSSRYVDFRDTISCLISE
FT                 KPTGIIPSERINTSGWKIPNRLQLADPQFFESNDIDLVMASNYMWDLLRSD
FT                 KVKLRNGTVTLRETDLGWIVTGTYDPCDKVSHSILHANVMRLDTLEEIVES
FT                 TLLSAENEKVDSQVQTTHRCNENDRCVLQIPSPIPDTRIPPRCVVDPDAIR
FT                 YKDTPSARIVLPFDGPAPIPEQKLRAAAYRPARPPILDSDGHWRAGDSIQK
FT                 PSPPAKTKRQRNLSHRPVPPRQITSILGQLPVKPFKRHKVTDVRPGVGNVP
FT                 RQALKLAIVVKSFSESEQPVQDRRSDEASWLDEDSRQEGFSASQRAGE"
XX
SQ   Sequence 3054 BP; 803 A; 812 C; 856 G; 583 T; 0 other;
     ttggtcactt cgtaccggac attcggccct cggaaactcg gatccgcgag tgaaaaccaa        60
     gagtgtttgt ggattccgga aaatgtgaac ggaacaagtc ggcaagaatc aaacccgagt       120
     gtggatccgg aagtgagaag ttcaaaaaac cttccggaag gcgactccgt ggcctggaac       180
     ggcggaaaca gtggcggcaa gagcccgcaa ataaaaagtg agaaaagtgc cagatagttc       240
     cgtggtgaga ctgcagtgaa aaagcgcagc gacgccattt tgtgatagtg gttcccaaga       300
     gtggaacaat ctgtaggaaa caggccgcac aagagttgcc ggtctttttc tatgtggcgg       360
     tcgttcctga agctgcccac ggaaccagaa agcgaagaag agaagaaacc cgtcgttgaa       420
     gtgctagtgc cgtccccagt gaaaccgctg acgccgaaga agttgtggga gaaaacgaag       480
     aaagcagaga tggcggacgg agaggtcaag gtgctttcca agaagcgaag ccaagttaaa       540
     gggaaactca cgcgaatcct gcatgcagtg cagccgagca cgcagcccgg tgccttgccg       600
     ggtgtccaac cacgtgaggc cgacgtgtca ccgccgcagc tacgagttca ccagcgcaac       660
     gtagagaagt attatggtga gttttgcgag atccatgata aaattctgga cgtggtggag       720
     gaagacgagg gagccaagca gcaagatgct aagtggttgg agtttgagca actctacaac       780
     cgaacgctgg tcgcgttgga aatgctgctg actgcgcata gcggaccggc tgtttcggcc       840
     caggctgtgc ttccggctag tcaagccgcc cagcaagtta tcgtccacca gcaagcgttg       900
     cgtgccccac tcccgacgtt cgacggacgt tacgagaact gggcaaagtt caaggccatg       960
     ttccaggact tgatgcgcag ttcgtcagat tgtgatgccg tcaagctgta ccacctggac      1020
     aaggcgctcg taggcgaagc ggaagggaag atcgaccttc gaaccatcca ggacaacaac      1080
     taccagggag cgtggaagga actggaggag cagtacgaga acacgcggct aatcatcgat      1140
     ctacacatcc aaggcatttt gcagctgaag aagatggaca agcggtcatc gaaagagttg      1200
     cgagatgtcg tcgagcggtg ctccaggcac gtcgagggac tacgcttcca caagcaagag      1260
     ctgttgggag tgtcggagct catcgtagtc aatatcctcg catcggcact ggaccgcgag      1320
     acgagagagc tctgggaagc gacgatcgag aaaggtgagt taccgacgta ccaagcgacc      1380
     gtcgacttct tgaggaagcg atgccacatt ctcgagcgat gcgagctctc cgacctagag      1440
     gcatctgctg tcacgccaac agttcccaag atgccgtctt caacgaaacc ctcggtgaat      1500
     gtgttcgctg cagccacgac cacaagcgag gtggtgtgcg agttctgcag tggcaaccat      1560
     ccgaactaca ggtgtagtgc cttctgcagc atgtctatcc cggaaaggct ggagaaggtg      1620
     agagaggcac gagcctgcta caactgcctg agaattggcc acctggtcaa gaagtgtccc      1680
     tccgtatgga cctgtaagtg tggagagcga catcataatt tgcttcacat gaacctaccg      1740
     agtgaacaag cgccgccaaa gttcgaagct gttccccaat cttcacccac cgttgtgcaa      1800
     gcgcccagca acatgaactc agccgacagc cccgagcaga cgacatcgtg ctgtaacagc      1860
     gggctgctgc aaacctcccg acctgtgttg ttgcagacag caatcgtcaa cgtagtggac      1920
     aagcatggtc gattacatcc gtgtcgcaca ctcctggact ccggatcgca agcccacatc      1980
     ctgtcagcgg cgatggcacg taagctcgga cttccgctga caaagtgcaa cgtaacggtg      2040
     attggagcga atgcagtaaa aacaccagcg aggaaaagtg tcagcctgaa cttttcttct      2100
     aggtacgtcg acttccgtga taccatttcc tgtctcatct cggagaagcc aacggggatc      2160
     attccgtccg aaaggattaa cacgtccgga tggaaaattc ccaacagact gcagcttgca      2220
     gatcctcagt tcttcgaatc caacgacatc gacctggtga tggcgtccaa ctacatgtgg      2280
     gatttgctgc ggtcggacaa agtgaagctg cgcaacggca ccgtaacgct tcgagagaca      2340
     gatctgggtt ggattgtcac gggtacctac gatccgtgcg acaaggtgag tcactctatt      2400
     cttcatgcaa atgttatgcg cctggatacc ctggaagaga tcgtagagtc aacactgctc      2460
     tccgccgaga acgaaaaggt cgatagtcaa gtacagacaa cccaccgctg taacgagaac      2520
     gatcgctgcg ttcttcaaat tccgagtccg atcccggata cccgaattcc tccgcgctgt      2580
     gttgttgatc cagacgctat tcgctacaag gacacgcctt ccgcaagaat cgtgctgccg      2640
     ttcgacggtc ctgcaccgat ccccgagcag aaattgagag cagccgcgta ccggccggct      2700
     cgcccaccga tactcgacag cgatggccac tggagagccg gtgatagcat ccaaaaacca      2760
     agcccaccag cgaaaaccaa acgccaacga aacctgtcgc atcgtccagt tcctccgcga      2820
     cagataacgt cgattctcgg tcaactacct gtaaaacctt tcaagcggca caaggtcaca      2880
     gacgtacggc ctggcgttgg caacgtacca cggcaagcct tgaagttggc aattgtcgtc      2940
     aaatccttct cggaatcgga gcaaccagtc caggatcgtc ggtcagatga agcttcatgg      3000
     cttgacgaag attcaagaca ggaaggattt tcagcttcgc agcgggcggg agaa            3054
//
ID   BEL-46_CQ-LTR repbase;    DNA;    INV; 369 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_CQ_;
KW   BEL-46_CQ-I; BEL-46_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-369
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 246-246 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 369 BP; 107 A; 86 C; 99 G; 77 T; 0 other;
     tgtccgccat cgcgtccgtt tggtaggctc ttcaagcgtg aaatgaaaaa ccacgacaga        60
     tggcagcact ggttgctgcg atcggcaaac cccccgccgc cgctgtcaaa cgtcagcggc       120
     gaagaagcaa cggcgacctg atcgactgtt tggcgcgaag aaaaagcgcg cgcaaagaac       180
     gacagaaaga ggaagtacaa gaattttcat tccgttcgca agttttgagt tgtccagacg       240
     tgtaaataaa aatcggtcga atagaagttt ttagagaaaa cgtgtgtttt tattccgtcc       300
     cagaacgtgg tatacagtcc cgcgaaagct taagtggaat cgacttgttg aggacaagcg       360
     gccgcaaca                                                               369
//
ID   BEL-46_DTa-I repbase;    DNA;    INV; 5677 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   02-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5677
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (02-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~99% identity to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           474..5642
FT                 /product="BEL-46_DTa-I_1p"
FT                 /translation="MHDEDSKNLLKLNSLKAQRETFEKHIRNLNQRVMSTG
FT                 DTEDADALNCRLHILESHYRQLTQVQTQIEPLHSSDDERGRLEEDFIAVKV
FT                 KIMSLIPKNRLMCSANGPEASCLNSTFAPASGHSQRLPKLQLPSFGGNYSA
FT                 FKRFYSSYKNLIHNDQQIATIDKFNYLLNCLSGPALEVVQSFQITEKNYEL
FT                 ALARLEARYDNDVLIFLDCISSLFNLPSVKQPDARAIQKLIDNASAIRGSL
FT                 CSLGSAEEIMNCIIIHIILTKVDSDTKSKYDEKQCFDKLSTWEDFCNILTR
FT                 RCQFLESQATGQLVQPKALHPGKRSLSKTFISTTSECLHCQSAAHYVGSCK
FT                 SFAELPLPQRFEIVKRSNACLNCLRKTHRVKECPSRSRCRVCRAMHHTLLH
FT                 KFEATTEPSVTFDQPTTSGLSHSHTTSLLTRMAKKGILPTALVHVYDKSGQ
FT                 PHVLRALLDSCSEVSFITEETAKRLNLDKQRVTQEVSGISGSSQGIKFNAF
FT                 ATLRARCSDFRWSSNFAIIKKICARQPQESFDTSKWEIPDALQLADPFFNE
FT                 SHKIHILINTEGFFDAIREGKQSLGDNMPYLINTAYGWIVGGNLGPAIRNP
FT                 LQKCFFAQSDLDLDTIVKKFWQIEGCEFPIPKYTSEESLCEAHFCKNTTLQ
FT                 TDGRVKVRLPFKDSPECLGDSYETAVKRFKSLERRLDRDDQLKHAYVEFLN
FT                 EYINLGHMAPIENANTKNSHFYIPHHCVIKPESLTTKLRVVFDASAKTTSG
FT                 KSLNDLLMIGPTIQQDLILTFLSFRLHRYALTGDIEKMYRQFLFDEKDRCY
FT                 QRILWRPESSGEIQTYELRTVTYGMSAAPFLAIRGLRHIADLHEDKYPLGA
FT                 ATVRKDLYVDDLLTGADQIIELQQIKDETVNILARAGLHLTKFSSNCKEIT
FT                 KTSENEVFIALNDQDITKTLGMAWKPNTDVFTFKYPCIHHEPFTKRTILSV
FT                 VARMFDLLGFISPVIVRCKILIQDISLKGLEWDEPVDGQLKERWINLLEDL
FT                 KDLPKIQIPRFVHTSKSHRSEIHGFADASERAYGCCIYVLAKLPDKIEVNL
FT                 LIAKSKVAPTKVQSLPKLELCAALLLNRTWRKIADNLIKHIDKVTFWSDSK
FT                 IVLQWLTMHASNLNCFVANRVSELQEHTSQATWRHVPSAKNPADIVSRGCR
FT                 AVDLLSTMWLTGPSFLRQPETEWPQLAEPLPPPIELRTRAILLCSKADSAN
FT                 SESTLNSIINNSSSYLRIIHIISYLFRCVNRNKPDTMIRSTTADSLRITAA
FT                 ELSDTFWRIVCLIQKENYKHEMASLANNKSLSPSLQRLAPFLHNFSIDKTE
FT                 VCVMRVGGRLENADIPFNAKHQALLPQTHRFTQLYVEYLHHSNLHAGPKIV
FT                 LSLLRERIWVINARQLIRKVVRNCTRCFHFKPRLMTQLMGSLPADRLRAER
FT                 PFLVAGVDFCGPFLTSYKLRGKQPYKTYAAIFVCFASRAIHIELVSELSTN
FT                 AFLLCIRRFIARRGVPLRMVCDNATNFVGAAKKLDEFKTKMLSSDIIDIVK
FT                 TYSTIKGFQFSFIPPRAPHFGGLWEAAVKSAKTLVLKNIANAYLTFEELQT
FT                 VFLDVEAILNSRPIAPASDDPNDFNALTPAHLLIGTELTSAPESSLHHSSD
FT                 APGKEMRYLDRWQRVTYLKQQFWSIWHRDYIHNLQQRGKWNREEPNLTIGQ
FT                 LVIVHEDNTPAQYWPLARIVSVTAGNDGKVRVAEVSTGKRVFTRPIHKLAP
FT                 LPN"
XX
SQ   Sequence 5677 BP; 1685 A; 1396 C; 1182 G; 1414 T; 0 other;
     tattggcgac cgtgacagga cggactcttg ccattagatg agtcttcgtc caattgcaac        60
     cattttggat tcgtgtgtct tattatttgt tcagttatca cagactaagc ttgagaagcc       120
     ccacatacag cggctgtctc tgatcaacgt aacctgcagc aacaacaaga ttgagtttgg       180
     actacggttt cgcaagggga cataacctca actcgcgtgc aaccaaattg ctctccacat       240
     acagttttac agtcattgag gaaaaccgca agtatacgca cacagtgcaa ataaatatac       300
     atacacacca acttgccctg ttttcttggt caatacttaa accttatgga cagctaggtt       360
     atcgtaggga acagctaata tatttacgca gatcacatac ttggttgttt acacctacat       420
     aactagccgt agtgtttttg cgctggtttt tctacactta agttctgccc aaaatgcatg       480
     acgaagattc aaaaaacttg ctcaagctaa acagtctcaa ggctcagcga gaaacgttcg       540
     agaaacatat ccgcaatcta aaccaaaggg ttatgtccac aggagacacc gaagatgctg       600
     atgcgctgaa ctgcagactc cacatcctcg aatcacatta tcgccagttg actcaagttc       660
     aaacacaaat tgaacctctg cacagctctg acgacgagcg cggtcggttg gaagaggatt       720
     ttattgcagt gaaggtgaaa atcatgtctc ttattccaaa aaatcggtta atgtgttcag       780
     caaacggccc cgaggcaagt tgtttgaact caacattcgc tccagcatca ggtcacagtc       840
     aacgacttcc gaaactacaa cttcctagct tcggtgggaa ttattcggca ttcaaacggt       900
     tctattcatc ttacaagaac ttgattcaca acgatcagca aattgcgacc atcgataaat       960
     tcaattacct tttaaattgt ttatcaggcc ctgccttaga agttgtacaa tcatttcaga      1020
     tcacagagaa gaattacgag ctagccttgg caagacttga ggcacggtac gacaacgatg      1080
     tccttatctt cctggattgc atttcaagtc tcttcaattt gccatcggtg aagcaacccg      1140
     atgcaagagc tatacaaaaa cttatcgaca acgcatctgc tatacgtggc tcactgtgct      1200
     ctttaggatc agctgaggaa atcatgaatt gcatcataat tcacattatt cttacgaagg      1260
     ttgactccga caccaaaagc aagtatgacg aaaagcagtg tttcgacaag ctctcaacct      1320
     gggaggattt ctgtaacatc ctcactcggc gctgccagtt ccttgaaagc caagcaacag      1380
     gtcaactggt ccagcccaaa gcgctccatc ctgggaagcg atctttatcc aaaaccttca      1440
     tcagtacaac ctccgaatgt ttacattgcc aatcagctgc acactacgtc ggcagctgca      1500
     agtcttttgc ggaacttccg ttgccgcaac ggttcgaaat tgtcaaacgc tcgaatgcat      1560
     gccttaattg tcttcgtaag acacacaggg ttaaggaatg tccatctcga tcacgatgca      1620
     gggtgtgtcg cgcgatgcat cacaccttat tacacaaatt cgaagccact acagaacctt      1680
     cggtaacatt cgatcagcca actacgtctg gcttaagtca ttcacacaca acatcgctcc      1740
     tcacacgcat ggccaagaaa ggaatccttc cgacggcact tgttcacgta tacgacaaat      1800
     cgggtcaacc ccacgtcttg cgcgcgcttc tggattcatg ctcagaggtc agcttcatca      1860
     ctgaggagac agcaaagcga ctaaacctgg acaaacaacg ggtcacacaa gaagttagcg      1920
     gaatttctgg atccagtcaa ggtattaagt tcaacgcctt tgccactctt cgagcccggt      1980
     gctcagattt tcgttggtca tccaactttg caatcattaa gaagatttgt gctcgccaac      2040
     cgcaggaatc gtttgacact tcaaaatggg aaattcctga tgcgttgcag ttagccgatc      2100
     cgttcttcaa cgagtcacat aaaatccaca ttctcatcaa cacagaggga ttttttgatg      2160
     cgatacgaga aggaaagcaa agcctcggcg acaacatgcc atatctaatt aatactgcat      2220
     acggttggat agtcggtggc aacctaggac ccgcaatccg gaatcctctg cagaaatgtt      2280
     tctttgccca atcggacttg gacctcgaca ccattgttaa gaaattctgg cagattgaag      2340
     gctgtgaatt tcctattccc aaatacacgt cggaagaaag tctttgtgaa gcacattttt      2400
     gtaaaaacac gacactgcag acagatggaa gagtcaaggt tcgacttcct ttcaaggact      2460
     ctccagaatg cttgggagac tcatacgaaa ctgcagtaaa gcgattcaaa tcattagaac      2520
     gcagacttga tcgcgacgat caattaaaac acgcatatgt ggaattcctc aacgagtata      2580
     tcaacctcgg gcacatggcc cccatagaga atgcgaatac caagaattcg catttttata      2640
     taccgcatca ctgcgtcatt aagcccgaaa gccttacaac gaaacttagg gtcgtattcg      2700
     acgcgtcagc taagacgacc tcagggaaat cattgaacga tcttctaatg attggcccaa      2760
     caattcagca agatcttata ttaaccttct tatcattccg tcttcatagg tacgcactca      2820
     caggcgacat cgaaaaaatg tatcgccagt tcctttttga cgaaaaagac agatgctacc      2880
     aaagaattct ctggagacca gaatcctcag gagaaataca aacatacgag ctgagaaccg      2940
     taacctatgg catgtcagca gcgcctttct tggctataag agggctaagg cacatcgcgg      3000
     atctacatga ggacaagtat ccccttggag ctgcgacggt gcgaaaagat ctttatgttg      3060
     atgatttgtt aacaggagca gaccagatca ttgagctcca acagatcaag gacgaaactg      3120
     tcaacatctt agctcgggct ggtcttcatc ttacaaagtt cagcagcaac tgtaaagaaa      3180
     ttactaaaac ttcggaaaac gaggtgttta ttgcgctcaa tgaccaggat ataaccaaaa      3240
     cacttgggat ggcttggaag ccaaacaccg acgtctttac tttcaaatat ccttgcatcc      3300
     atcacgagcc attcaccaaa cgaacaattc tatcagttgt tgcccgcatg tttgacttgc      3360
     tgggattcat cagcccagtg atcgtgcgat gcaagattct catccaagat atctctttaa      3420
     aaggactcga atgggatgaa ccagtcgacg ggcaactgaa ggagagatgg ataaacctat      3480
     tagaggattt aaaggactta ccgaaaatcc aaatcccaag atttgtacac acatccaaat      3540
     cgcatcgcag tgaaatacac ggtttcgctg atgcgtccga gagagcttac ggatgttgta      3600
     tttatgtcct tgctaagctc cctgacaaaa tcgaagtaaa tctgctcatc gcaaaatcaa      3660
     aggtagctcc cacaaaggta caatctctgc ccaagctcga actttgcgca gcgttactgt      3720
     taaataggac gtggcgtaaa attgcagata atctcataaa acacattgac aaggtaacgt      3780
     tttggagcga ctccaaaatt gtgctacagt ggctcacaat gcatgcatca aatctgaact      3840
     gcttcgtagc gaaccgcgta tccgaactcc aggagcacac tagccaggcg acttggaggc      3900
     acgtcccatc agcaaaaaat cctgcggaca tcgtatcgcg tggctgccgt gcagtcgact      3960
     tacttagcac catgtggcta acaggtcctt cattcttacg tcaaccagag actgagtggc      4020
     cacaattagc agagccgctt ccaccaccga tcgaattacg aacaagggca atccttttgt      4080
     gtagcaaagc agacagcgca aactcagaat ctactttgaa ttcaatcata aacaattcgt      4140
     catcttatct acgtattatt catataatat catatctgtt tcggtgcgtg aaccgtaata      4200
     aacctgacac aatgataaga tcgacaacag cagacagcct tcgcatcaca gcagctgaat      4260
     tgtcagacac tttctggaga attgtctgtc tgatacagaa agagaactac aagcatgaga      4320
     tggcgtcgct ggcaaacaac aagtccttgt cacccagcct ccagcgattg gctccatttc      4380
     tacataattt ttccatagac aaaactgaag tatgtgtgat gagagtaggt ggccgcttag      4440
     aaaacgccga tattccattc aacgcaaagc atcaggctct attaccccaa acccatagat      4500
     ttacacagct gtatgtagaa taccttcatc acagcaacct tcatgctggc ccaaaaatcg      4560
     ttttgtctct tctacgagaa cggatttggg taattaatgc cagacaattg ataaggaagg      4620
     tcgtcagaaa ctgcacacga tgttttcatt tcaaacctcg tcttatgacg caattgatgg      4680
     ggagtctacc agcagaccgc ctgcgagctg aaagaccgtt tttggtcgca ggagtcgact      4740
     tctgtggacc ctttctaacg tcatacaaac tgcgtggcaa gcagccgtat aagacatacg      4800
     cagccatttt tgtatgtttc gcctcgaggg ccattcacat tgagttggtg tccgaattat      4860
     cgacaaatgc tttcctgctt tgcatccgaa gattcatcgc gcgtcgtggt gttcctctgc      4920
     gaatggtttg cgataacgcc acaaactttg tcggcgccgc caaaaaactc gacgaattca      4980
     aaacaaaaat gcttagctca gacattatcg acatagttaa gacttacagt acaatcaaag      5040
     gttttcaatt ctcttttata ccccccaggg caccccactt tggcggcctc tgggaggccg      5100
     ccgttaaatc ggcaaagaca ttggtgctaa agaacatcgc gaatgcatac ttaacattcg      5160
     aggaactgca aacagtgttt ctggatgtgg aagccattct gaattcaaga ccaatagcac      5220
     cagcttccga tgacccaaat gactttaacg cgttaactcc ggcccatttg ctaattggaa      5280
     ccgagttaac ctcagcaccc gagtcgtcgc tgcaccattc ttcggatgct ccaggaaaag      5340
     aaatgcgcta cctggacaga tggcagcgtg tgacctacct caaacaacag ttttggtcaa      5400
     tttggcaccg ggactacatc cacaatcttc aacaacgcgg caagtggaac cgagaagaac      5460
     caaatctgac gatcgggcaa ttagtcatcg ttcacgagga taacacccca gcgcagtatt      5520
     ggccgttggc aaggatagtg tccgttactg ctggaaacga tggaaaggtt cgagttgccg      5580
     aagtcagcac cggcaagaga gtttttacga gacctataca taagctcgcg cctcttccta      5640
     attaatttga aactgacgca tttcaacgcg gggagga                               5677
//
ID   BEL-46_DTa-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.10, Created)
DT   02-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-46_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-392
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5668-5668 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 392 BP; 115 A; 95 C; 73 G; 109 T; 0 other;
     tgttggagga gaacgcctcc gctgactatt atttctatca cattgtaaat agtttatttg        60
     attaaatccg aaatcttatt attttgtata tcgatacatc gataccctgg aaggcacgcg       120
     atctggcaac accagactcg ctcctttctc tttccttttg atactgccat tctggtcgga       180
     aatttccatg cccacaagtt tggagatttt cactgcctaa tgaacgagcg aatgcgacga       240
     acgcaaaata aactcagcaa ccaagcccaa cttaacaagt gttttttatt taatcgagaa       300
     ttaagcctac cagcaggcat acgactgcaa ttcatctgga ctaccggagc tccaaaaggc       360
     tgcaattcat ctggccgaga aagcggccaa ca                                     392
//
ID   BEL-47_AA-I repbase;    DNA;    INV; 6225 BP.
XX
AC   supercont1.248;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_AA_;
KW   BEL-47_AA-LTR; BEL-47_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6225
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.248; Positions 1220400 1214176.
XX
CC   Positions [5232-5810] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           902..4417
FT                 /product="BEL-47_AA-I_1p"
FT                 /translation="MPGKSKTSFKMLQARLRGLQTSFDNMFSFMEDYTDDT
FT                 RVTEVKVRLDRLDALWDRINENIEEVESHEESTSEPESFVKVRIDFENRFY
FT                 QLKSFLLDKIRENSDETVLNPIIRSHDNTHSAPNPHVRLPQITLPKFSGKI
FT                 DEWQTFRDLYTSLIHWQPDLPEIEKFHYLRSQLEGEALAVIDSLPLTRANY
FT                 AVAWDLICTRYSNSKILRKRQVQALFELPDVKRESAAELHTLLDSYEKIVK
FT                 SLDQATPQSTEFKDLLLLHLLSSRLDSATRRSWEEYSATKETDTVKDLTDF
FT                 LQRRIQILEALPSRPVEQRMEAGSSKFPRKPNVVKVCNTTLQPSAPIKCVA
FT                 CSDSHLLYQCAHFLKLPVSERDGLLRSHSLCRNCFRRGHQARECNSKFTCR
FT                 QCKGKHHTLVCFRGKPNENRATHTNEPSTTPTATESNGEKTNTKVVNVATT
FT                 STLTCSSATGSPTGVLLLTAIVILEDDQGHTVQARALLDSAAECNLITKRM
FT                 RKQLVLKEAASMVQVVGIHGTSNKVHGRVTVTVRSRISNFSQGMEFYVLPK
FT                 LSAQPGIASVDPSKWNLPVGVELADPHFLTSEPIDLVLGAEFFFDMFVSGQ
FT                 RITMGDNLPLLVDSVFGWIATGRYPIDSPVTSVLCDVATSSQVERLIEKFW
FT                 EYEEVGLESNMSPDEAKCEDYYSQTTRRQATGRYSVSLPRNGELICNLGDS
FT                 RASAEKRFLQIERRLNRESSLRDQYVSFMEEYEALGHMSRVDHEGDGVERC
FT                 YLPHHPVVKEGSTTTRVRVVFDASARTSTGLSLNDCLHSGPVIQRDLRSII
FT                 LRSRFRPIMLVADIEKMFRQVDVCPEDRRFQSILWRPSPDQPLATYELKTV
FT                 TYGTKPAPFLATRTLVQLVNDEAERFPLASATVKNDFYMDDAITGANDSVT
FT                 AKDLRIQLVDMLQSGGFKLRKFASNCPSVLEGIPNEDLSIQAADGIYLDPD
FT                 PMVKTLGLIWIPPTDEFRFHFKAPSLVDTPLTKQKIFSIIASLFDPLGFIG
FT                 PVITQAKIIMQLSWQLLDDKGQKLAWDSPLPSKVEEEFRRFYQQIPLLNDL
FT                 RIARLVVTPQATQTQLHIFSDASEKALGACVYVRTTDSSGRIKVALLLSKS
FT                 RVAPLKTQTIPRLELRAATLAAEMYSQVMDSIETPIENFLLDGFRNCPSLV
FT                 CCNPIDLDDLCCE"
FT   CDS           5163..6224
FT                 /product="BEL-47_AA-I_2p"
FT                 /translation="MRCYRTKPATIRQFMAELPKPRVVPAKPFSTTGVDYF
FT                 GPIYVRPGYRRTAVKAYVAVFVCFSTKAVHLELATDLSTACFIQALRRFIS
FT                 RRGKCVQLFSDNGTNFVGAKNAMEKLLQNLRSKEHNEAVSKWCTDEGMQWS
FT                 FIPPGAPHFGGLWESAVRSTKVHLLKVLGDIAVSYEDMTTLLAQVECCLNS
FT                 RPLTPLSDDPEDLEALTPGHFLVSMSLQALPEENLTSVPPGRLQHRDFIQQ
FT                 CLQFYWKRWKSEYLTQLQARTKWWQPPTEIRTGSLVVIRDDNQPPTRWRMA
FT                 RIHAVHPGEDNVVRVVTLKTADGFIKRPVSKICILPVADPVEADVMDPQHT
FT                 SETPAVSEGGR"
XX
SQ   Sequence 6225 BP; 1719 A; 1473 C; 1493 G; 1540 T; 0 other;
     gccatgtgaa cagttgtgtc gaggaagaaa ttttactagc ttaactaaat ataatccact        60
     taaacgttaa attcaataaa gttcagtccg gagtatggtg ttttagtgct aaatagtcta       120
     gtgtttcttg tgctcaaccg aatcaactca agtgctaagt gaattggccc aattccaaaa       180
     gcccaaggcg acccaggacc gaaaccccag gaatacttac cccactatcg accaacccgc       240
     caaaaatccg gaacggcatc ctcagctatc gatcagttgg tccttcgaac cggattggtt       300
     ggtcgaaggc accgaatcgg agaaacccat ccgccatcgt agaatctcca accaattcac       360
     tgcacagcga ctcaagtacg ccatcttggc ttttggcgtc gatgcacatc acctttcatc       420
     atccaatcac caaatcatcg gcatttaatt atccaaggca tatgttcaac ggaaaatcgg       480
     tgagtgcaat tccaaggctt tatacccaaa aatccagtac tgctcgtggt cttcatgtgt       540
     aataggttat cctcgacatc ggtactgttc cacgtcatcc cattcatcat tacaacgagg       600
     tacatcacta cgactggcaa acaacttatc aatcagtgga actgaaaact gcatacccga       660
     agaaactcca ttcagctccg cttaccttgg aggaaggtcg ccattctgat catcgagtgc       720
     atctggtagc aaactccaaa cgtccggctt catccgctgc gtagcaaccg ctggctctgt       780
     tcctgctcac ctctaatatc aatacaaggc tcatacataa gagccagcag gtaattagcg       840
     ctccaacgtt actactgtcc caaattgtgc tactttggtc tcatttttcg aggaacacac       900
     tatgcccgga aaatcgaaaa cgtcgttcaa gatgttacag gcgcggctgc gaggtctaca       960
     aacgtccttc gacaacatgt tcagcttcat ggaggactat accgacgata cgcgagtaac      1020
     cgaggtcaaa gtacgactgg accgattgga tgcactttgg gataggatca acgagaacat      1080
     cgaagaggta gaatcccacg aagaatccac tagcgaacct gagtctttcg tgaaggttcg      1140
     tatagacttc gagaatcgat tttaccagct caaatcgttt ctcttggata agatcaggga      1200
     gaatagtgat gaaactgtgc tcaatccaat tattcgctct cacgataaca ctcattccgc      1260
     acccaacccc cacgttaggc taccccaaat aacactaccc aaattcagtg gcaaaattga      1320
     tgaatggcaa acctttcgcg acttatacac ttctctaata cattggcaac ccgacctccc      1380
     cgagattgaa aaatttcatt acctccgcag tcaacttgaa ggtgaggcgt tggctgttat      1440
     tgattcgctt ccactcacca gagccaatta tgctgtggca tgggatctaa tctgcactcg      1500
     gtactcgaat tccaaaatcc ttcgtaagcg tcaggtacaa gccttgttcg aattgccaga      1560
     cgtcaaaagg gaatcagcag cagaattgca caccttgttg gactcctacg agaagattgt      1620
     gaagtcattg gaccaagcaa ccccccaatc cactgaattc aaggatcttt tgcttcttca      1680
     cctactcagc tcgcgacttg atagtgcaac gaggaggagt tgggaggaat attctgctac      1740
     caaggagacc gacaccgtaa aggatcttac ggacttcctg cagcgtcgta ttcaaatttt      1800
     ggaggcactc cccagtcgac cggttgaaca acgaatggaa gctggttcat cgaaatttcc      1860
     aaggaaaccc aatgttgtga aggtttgcaa caccactctt caaccatcag ctccaattaa      1920
     atgcgtggct tgttcggata gtcatctgct ttatcagtgt gcacattttc tgaagctacc      1980
     tgtttcggaa agggatggac tgctacggtc tcactcgctg tgtcgaaact gttttcgacg      2040
     tggacatcag gctagagagt gtaactcaaa gttcacttgt cgacaatgca agggcaagca      2100
     tcacacgctt gtgtgcttca ggggaaaacc gaacgagaat agggcgaccc acaccaacga      2160
     acccagcact actcctacag caaccgaatc aaacggagag aaaaccaaca ccaaggtggt      2220
     taacgtggca accaccagca cactaacttg cagttcagct actggatccc caacaggagt      2280
     gttgttgctc acggcgatcg ttattctgga ggatgaccag ggtcataccg tacaagcgag      2340
     agcgctgttg gatagcgctg cagagtgtaa tcttatcacc aagcgtatga ggaagcaatt      2400
     ggtactcaag gaggcagcca gcatggtaca ggttgtaggc atccacggta cttctaacaa      2460
     ggtgcatggg agggtcacgg tgactgttcg ttctcgaatt tcgaacttct cccaaggtat      2520
     ggagttttat gttttgccca agttgtcagc ccagccagga atagcttccg tagacccaag      2580
     taaatggaat ttaccagtag gagttgaatt agcggaccca cactttctca cgtctgaacc      2640
     gattgacttg gtgctaggag cggaattctt tttcgatatg tttgtgtctg gccagcgtat      2700
     aacgatgggt gacaatctgc ctctattagt tgactcagta ttcgggtgga tagctacagg      2760
     tcgataccca atagatagcc cagtcacctc tgtgttgtgt gatgtagcga cttcgagtca      2820
     ggtagagaga ttgattgaga aattttggga gtatgaggag gtcggtttgg agagcaatat      2880
     gtcgcccgac gaagccaaat gcgaagatta ttattcccaa acaacccgaa ggcaagcaac      2940
     tgggaggtat tcggtgtccc taccgaggaa cggagagtta atttgcaatc tgggagattc      3000
     gagagcatca gcagaaaaga gattcctaca aatcgagcga cggttgaacc gagagtcatc      3060
     gttacgcgat cagtatgtgt ctttcatgga ggagtatgag gcattagggc atatgtcacg      3120
     agtcgatcac gagggggatg gagtggaacg atgctatctc ccacaccacc cagttgtaaa      3180
     ggagggaagt accactacac gggtaagggt ggtgtttgat gcatcagcca gaacatcaac      3240
     tggcctttcg ctaaatgact gtttgcattc tggtccggtc atccagagag atcttcgatc      3300
     gattattctt cgtagtcgtt ttcgcccaat tatgttggta gccgacattg agaaaatgtt      3360
     tcggcaagta gatgtttgcc cagaagacag gcggtttcaa tcaattcttt ggcgtccgtc      3420
     accggatcaa cccttggcaa cttatgaatt gaaaacggtc acctatggaa ccaaaccagc      3480
     cccatttctt gcgacaagga ctttggtaca acttgtaaat gatgaagccg aacgattccc      3540
     acttgcatct gctacggtga aaaacgattt ttatatggat gatgccataa ctggggcgaa      3600
     cgattctgtg accgccaagg atttacggat tcagttggtg gacatgcttc agagtggtgg      3660
     atttaagctc cgaaaattcg cgtcgaattg cccatccgtt ttagaaggta tacccaatga      3720
     agacctctca attcaagcag cggatggaat ttacctggac ccggacccca tggttaaaac      3780
     gttaggactg atttggatcc ccccaacaga tgaattccga tttcatttca aggctccttc      3840
     tctcgtagac actccactca ccaaacagaa aattttctcg atcatagcta gtttgtttga      3900
     cccacttgga tttataggac ctgtaattac ccaagccaaa atcattatgc aactctcatg      3960
     gcaattgttg gatgataagg ggcaaaaact agcatgggac tcaccattgc catcgaaggt      4020
     agaagaggag tttaggagat tttaccaaca aattcctctg ctcaacgatt tacgcattgc      4080
     aagattggta gtaacacctc aagcgacaca aacccaatta cacatatttt cggatgcttc      4140
     ggaaaaggcc cttggagcgt gtgtatacgt gaggacgaca gattcatcag ggcgaatcaa      4200
     ggtggctcta ctgttatcca aatcgcgggt agcaccgctc aaaactcaaa cgatcccgag      4260
     gcttgagttg cgcgccgcaa ctttggctgc tgaaatgtat tcccaggtta tggattcgat      4320
     cgaaactcct atcgaaaact ttcttctgga cggattcaga aattgtcctt cattggtgtg      4380
     ctgcaatccc atcgacttgg acgacctttg ttgcgaatag tgtcgccaag atttaacggt      4440
     tgactgaaaa ttgccactgg aatcatatcc ccggagagaa aaatccagca gatctcattt      4500
     ctcgtgggat cctccctgaa gaaattttgg agaaccgttt gtggtgggac gtcaactggt      4560
     tgcacacaga tatggaaaag tggccgaagc aaaaggtgtt caccgcaaat ggaatggcag      4620
     aggagagacg acaagttgta ttatcatcaa gggtgtcgga ccctagtttc atcgaagagt      4680
     acgtactacg atattcaacc tacactacaa tggttcgtca tgctgcttgg tgtcgtcgtt      4740
     acctatacaa cctgcgcgtg aagaagggca atcgcaaggt cggaccattg accgtagaag      4800
     aactactaca agccgaaacc aaaatattac agcgggttca gaaagatgtt ttcgatggag      4860
     agttgaaggc ggtaaataag ggcgagagtg tatcgcgaca atcaccccta cgctggtatt      4920
     gcccatttgt cgcgcacgat ggtttgttga gggtaggggg gagacttggg aagtcggatg      4980
     agtgtgagaa tgcgaagcac ccaattgtgc tacctgcacg ccatacgcta acaaggctaa      5040
     tacttcgtca ctatcattta aaactgttgc acgctggacc acaactcata ctgagcacag      5100
     ttcgactctg attttggcct ctcgggggac gtaatttagc gagacagatt tgtcatgagt      5160
     gtatgcgttg ctatcggacg aagccagcga ccattcgtca gtttatggcc gaactaccta      5220
     aaccgagagt tgttccagca aaaccgtttt cgacgacagg ggtcgactac ttcggcccga      5280
     tctatgtgcg acctgggtat cgaagaacag cagtaaaggc gtatgtggca gtgtttgtat      5340
     gtttctccac gaaggcagta catctggagt tagccacaga tttatcgacg gcctgcttca      5400
     tccaagcttt aaggaggttc atttctcgtc ggggaaagtg tgtccaattg ttctccgaca      5460
     acggcacaaa ttttgtaggg gcaaagaacg ccatggaaaa gctcctacag aatctacgat      5520
     ccaaggagca taacgaagca gtttcgaagt ggtgtacaga cgaaggaatg cagtggagtt      5580
     tcataccccc cggcgccccc cactttggcg gcctgtggga gagtgccgtc cgatcaacaa      5640
     aggtgcacct gctgaaggtt cttggcgata tagcggtatc gtatgaggat atgacgactc      5700
     tcctagccca ggtggagtgt tgtttaaatt caaggcccct aacacctcta tctgatgacc      5760
     cagaagattt ggaggcctta actcctggcc attttttggt ttccatgtcc ttgcaagcat      5820
     taccagagga gaatttgacc agtgtaccac caggaaggct gcaacaccga gacttcattc      5880
     aacagtgtct tcagttttat tggaaacggt ggaagtccga atatctcacc caactgcagg      5940
     cacgtaccaa gtggtggcaa ccgccaacgg aaattaggac tggaagtctg gtagtgattc      6000
     gcgacgataa tcaaccaccg acacgctgga gaatggcacg tattcatgcc gtgcatcccg      6060
     gggaggacaa cgtagttaga gtcgtcacac tcaagacagc cgatgggttc atcaagagac      6120
     cggtttccaa aatatgtatt ctgccggtag ctgatccggt ggaagcagat gtgatggatc      6180
     cacagcatac ttctgaaact ccggccgttt cagagggggg gagga                      6225
//
ID   BEL-47_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   supercont1.248;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_AA_;
KW   BEL-47_AA-I; BEL-47_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-186
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.248; Positions 1214175 1213990.
XX
SQ   Sequence 186 BP; 63 A; 39 C; 30 G; 54 T; 0 other;
     tgttgggaac caccctaccc aatctctcct catagttggt gctgacaggc atcgctacca        60
     aaattttttg cgtttcaata tttcctctag ttcttaagaa aaaattgcga gaagaagaat       120
     tacaattgta atagaaactg gccatatgcc tgcagaatca ttccataact agaataaaaa       180
     tgtaca                                                                  186
//
ID   BEL-47_AnFu-I repbase;    DNA;    INV; 5824 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5824
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 694-694 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..5798
FT                 /product="BEL-47_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPITPRSPRGEKEVSTIPPNQEPFRGFATEEIYGVSK
FT                 QLRILRLQHSSQRRKINQLLEDVTLVPVTTLTHDVKKQYLEDLKTKQCQIF
FT                 DQIVTLAPDDAEKDFEDDEACSKLYMKLDTLIANGVPSETSAVPVPILQQS
FT                 PHLKVPVPTFDGTYDQWPKFKAMFIDLVQRCGTSDAVKLHHLNKALIGKAS
FT                 GILNASIIASNNFASAWQLLEDRFENPRAIVERHIAGLLQLKKVTRESAEG
FT                 LRELMDTCKTHIDGLSFMKKDLDGTSELIVTHILSSCFDPETKKQWERTMT
FT                 RGQFPDMKSTLQFLCRQCEVLEQCAIEKTERGKKPGSSVFTSSVQSCRYCH
FT                 SDQHTISQCPDLMALSTAERQKKAQKLALCFNCLAPGHAASKCESKRTCRK
FT                 CNKRHHTLLHVEAATELPRPVPQSVTAVSSSSGSHPSSQIVLSVNGEAKST
FT                 VLLSTVLITIMDDQGVEHQARALLDSGAQSNFIAGRLAQVLRLPRKSVNIP
FT                 LSGIGGSANINVRHSVRATIKSRCSNDSFTVDMLVLSKPTATLPTQPVDIS
FT                 NWNLPGEYILADPSFNQPGRVDIILGAELFYDYLMDRRVSFGLHRPVLQES
FT                 KFGWIVSGSTPIKSPSPSVVCATAISDLGTIMQKFFEIEELSSTSGWSIEE
FT                 QACEDSFVTTTTRDPSGRYVVRLPRKPHMTGMLGESRSIALRRFLTIERRL
FT                 QREPETRKAYNDFMEEYLRLGHMSKVAATNEAQERYYLPHHPVFKADSTTT
FT                 KCRVVFDASSKTSSGLSLNDTLMVGPTIQQDATSILMRFRTYSVALTSDIA
FT                 KMYRQVVVHEDDRALQRILWRFSPSEPIQEYQLNTVTYGTASAPFLAIRSL
FT                 KQTIIDHGDEFPAAANRFSDFYVDDFVSGDRSVETAKNLQAEMQHLYAKGG
FT                 FELRKWASNEPSILSAIAEDNLATSPFAIGDNAGPLGTLGVVWTPSSDILQ
FT                 FKVGTTGITGPLTKRKVSSCIAQIYDPLGIVDPVKAVAKQILQHIWSLKKE
FT                 NLQPWGWDDELPQELQQQWTQFQSQLVNLKQLTIPRVAVSRDAVEVQFHFF
FT                 CDASEQGYGACCYLRSINESGDITMQLFASKTKVAPLKVKHSIARLELCAA
FT                 HLSGQLYERVRSAAEYTFPAVFWTDSMTVIHWLRSPPNRWKPFVGNRVSQI
FT                 QQLTHGCSWRHISGVDNPADLASRGCSSTDLLNNTLWWQGPSWICLAENEW
FT                 PETPLSYNNQVAEEEQRSSTVVCPAVEVTPHRIFTLYSSYSKLRRMMAYWI
FT                 QFFNRRYHRRTYDRTGLTTMDLKDAENLLCRLSQQDCYKSELKALQRNDPV
FT                 AASSKLKWINPQLGADGIIRVGGRLENSSLPINAKHPVVIPGNHPLASLIM
FT                 KHYHLTQFHAGPQLMLSISRQRYWIINGRNLARKIHHECFTCFRARPPSTH
FT                 TLMADLPPGRVIAARPFSISGIDYCGPILVKGSHRRAVPTKAYVAIFICFI
FT                 TRAVHIELVSNLTTEAFLSALRRFVARRGLPSELHSDNATNFKGACNQLNE
FT                 LYQMLHSEQHLHTITSWTLEHGISWKFIPPRAPHFGGLWEAAVKSMKTHLV
FT                 RVVGTSSLSFEDMTTLLAEIECCLNSRPLTPLTDDPSDMNALTPGHFLIGS
FT                 HLKDVPDNVSTTIPSNRLNHWQQVQQLKRRFWDRWHREYLQLFQVRSKWLK
FT                 EIDTQITIGSLVLVREENTPSTQWPLARVVELHPGRDGIARVATVVNSKGT
FT                 TITRPIVKLCVLPKMC"
XX
SQ   Sequence 5824 BP; 1654 A; 1396 C; 1361 G; 1413 T; 0 other;
     tttttggtcc ttcgaaccgg atctcggtat tcagttaaac ccggaccgtc ggaatccggg        60
     tagtacgaga gtgctccgag cagcactctc gcaagtaaac gggttactgt gcgagtgtct       120
     cgaagtgaag tgtcaataag cagttcgcag gtgcgcgttg gacaagtcag cggcacacgg       180
     ttggcaaagc agcatttggg ctcataggca accgtctcaa cggatgcgac gaggattggc       240
     ggtcaagaca acggcacacg gttgggcaag cagcggcagt gctcatcggc aacccgactc       300
     atcacgacgt gcgacagcgg ctcgtaagcg gccggctttc gttcttaaag gtgcgcgttg       360
     gacaagacaa cggcacacgg ttgggcaagc agcggcagtg ctcatcggca acccgactca       420
     tcacgacgtg cgacagcggc tcgtaagcgg ccggctttcg ttcttaaagg tgcgcgttgg       480
     tcaagacaac ggcacacagt tttgccaagc agcggtagtg ctcaccggca actcgattta       540
     ttacgactca tcgataggcg acagacattc gtcgcatcaa ggctatcatc atgcctataa       600
     cacctagatc gccaaggggc gaaaaagaag tttctacaat accaccgaat caagagcctt       660
     tccgaggttt tgccacagaa gaaatatatg gtgtctcaaa gcagctcaga atattgagac       720
     tacaacattc aagtcagcgt cggaaaataa accaactgtt ggaagacgta accttagtgc       780
     cggttactac attaacacat gatgtaaaga agcaatatct ggaagatttg aaaaccaagc       840
     aatgtcaaat ctttgatcag atagttacat tagcgccaga tgacgcagaa aaggatttcg       900
     aggacgacga agcatgttca aagctttaca tgaaattgga cacgcttatt gcaaatggcg       960
     taccgagtga aacgtctgct gttcctgttc ctattcttca gcagtcacct caccttaaag      1020
     tcccggtgcc cacgtttgat gggacttatg atcaatggcc taagtttaag gcaatgttca      1080
     tcgatctagt tcaacgatgc ggaacgtcag acgctgtcaa gctgcatcac ctgaacaagg      1140
     cattgatcgg gaaggccagt ggaattctga atgcgagcat tatcgcttct aacaactttg      1200
     ccagtgcatg gcaactactt gaagatcgat ttgagaatcc tcgagccatt gtggagcgac      1260
     acattgccgg cctgctacag ttgaagaaag taacgcgaga atctgcagaa ggactacgtg      1320
     agctgatgga cacatgtaaa acccacatcg acggtctttc cttcatgaag aaagatcttg      1380
     acggcaccag tgaattgatt gttacccaca ttctatcgtc ctgtttcgat cccgaaacca      1440
     aaaaacagtg ggaacgaacg atgacccgtg gacagtttcc ggacatgaag tcaactctac      1500
     aattcttgtg cagacagtgc gaagtgctgg agcagtgcgc cattgaaaaa accgaaaggg      1560
     gcaagaaacc agggtctagc gtatttacat catcagtaca aagctgtaga tactgtcaca      1620
     gtgaccagca caccatcagt cagtgtccag atttaatggc gctctcgaca gcagaacgac      1680
     aaaagaaggc acaaaagctt gctctttgct tcaattgcct tgcacccgga catgctgcat      1740
     caaagtgcga atctaagcga acgtgtcgca agtgtaacaa gcggcatcat acgctgcttc      1800
     atgtggaagc agctacggaa ctacctagac ctgttccaca atctgtaaca gcagtatcgt      1860
     catcttcagg aagtcatcca tcctctcaga ttgtgttaag cgtaaatgga gaagctaaga      1920
     gcaccgttct cctgtctact gttcttatca ccatcatgga cgatcaaggc gttgagcatc      1980
     aagcacgtgc attattggac agtggtgcac aatcaaattt catagctgga aggttagccc      2040
     aagtactccg attgccaaga aaatctgtga acatccctct gtcgggcatt ggtggcagcg      2100
     ctaacataaa tgttcgacat tcggtacgag ctactatcaa atctcgttgc tctaatgatt      2160
     cctttacggt ggatatgttg gttttgtcta aaccaacggc tacgctacca acccaaccag      2220
     tcgatatcag caattggaac ctcccaggtg aatacatctt agcagatcca tcatttaacc      2280
     agccagggcg cgtggatatc attcttggtg cagagctttt ttatgattat ctcatggatc      2340
     gacgtgtatc tttcggtcta catcgtccag tgttacaaga atccaagttt ggctggatag      2400
     tgagtggaag tacgcccatt aaatcaccat ctccatcggt agtatgtgcc acagctattt      2460
     ctgatcttgg cactatcatg caaaagttct tcgaaattga agagttgagc agcacatctg      2520
     gctggagcat agaggaacag gcatgtgagg actcctttgt tacaacaaca actcgtgatc      2580
     catcaggtag atacgtcgtt cgccttcctc gaaagccaca catgaccgga atgttgggtg      2640
     aatctcggtc catcgcgtta cgtcgttttc tgacaatcga acgacgatta cagcgggaac      2700
     ccgaaacacg taaagcgtac aacgacttca tggaggaata tttacgtttg ggacacatga      2760
     gcaaggtagc agcaaccaac gaggctcaag aaaggtatta tttgccccac catcctgtct      2820
     tcaaagcaga tagtacgact actaaatgca gagtggtatt cgacgcatct agtaaaacct      2880
     ctagcggact gtccctgaac gataccctga tggtaggacc gacgatccag caggatgcaa      2940
     cgtccatttt aatgcgcttc cgtacgtatt ccgtcgcact aacttccgac attgctaaaa      3000
     tgtaccgaca agttgtagta catgaagacg atcgcgcatt acaacgtatc ttatggcggt      3060
     tttctccaag tgagccgata caagagtacc agctcaacac tgtaacgtat ggtacagcct      3120
     cagcgccatt tttggcaata cggtcgttaa aacagacgat tatcgaccat ggagacgaat      3180
     ttccggccgc agcaaatcgg ttttccgatt tttacgtcga tgacttcgta tctggagatc      3240
     gttcggtgga aacggcaaag aatctacaag cagagatgca acacctgtac gcgaaagggg      3300
     gatttgagct acgaaagtgg gcatccaatg agcccagtat tcttagtgcg atagctgaag      3360
     acaacttggc aacgagtcca tttgcgatag gtgacaacgc gggtcctctt ggcacattag      3420
     gagtggtttg gacaccgtca tcagatattc tgcaattcaa agttggcact actgggataa      3480
     cgggaccact taccaagagg aaggtctcgt cttgtatcgc tcaaatctac gaccctttgg      3540
     gtattgtcga tcctgtgaaa gctgtagcaa aacaaatctt acagcatata tggagtctca      3600
     agaaggagaa tttacaacca tggggatggg acgacgagct tccacaagaa ctacaacaac      3660
     agtggacaca gttccaaagc caattagtaa atctcaaaca gctgacgatt cccagggtag      3720
     cagtttcacg tgacgccgta gaagtgcagt tccatttctt ttgtgatgca tcggaacaag      3780
     gctatggcgc atgctgctac ttaagaagca tcaacgaatc aggagacatc acgatgcaat      3840
     tatttgcatc aaaaaccaag gtagcaccat tgaaggtgaa acattccata gcccggttgg      3900
     aattgtgtgc ggctcacttg tctggacaac tgtatgaacg agtcagaagc gctgcggaat      3960
     acacctttcc tgctgtgttc tggacggact caatgacagt gattcattgg cttcgatctc      4020
     ctcccaacag atggaagcca tttgttggaa atcgcgtctc tcaaattcaa caactaacac      4080
     acggctgcag ctggcggcat atttcgggag tggataatcc agcagatctg gcttcacgcg      4140
     gatgttccag taccgatctt ctcaacaata ccttatggtg gcagggaccc agctggattt      4200
     gtttggcaga aaatgaatgg cccgaaactc cactatcata caacaaccaa gttgccgaag      4260
     aagaacagag gtcatcaact gtagtttgcc cggctgtaga agtaacacca catcgaatat      4320
     tcacacttta ttcgtcttac tccaaacttc gacggatgat ggcgtactgg attcagtttt      4380
     ttaatcgccg ataccatcga cgcacctacg acagaactgg tctgaccaca atggatctca      4440
     aagatgcgga aaatctgtta tgccgactat cacaacaaga ttgctacaag tctgagctca      4500
     aggcgcttca acgaaatgat ccggttgctg catcatcgaa gctgaaatgg atcaacccgc      4560
     aactaggagc agatgggatc atcagagttg gaggtcgatt ggaaaattcg tctcttccaa      4620
     tcaacgctaa gcacccagtc gtgattccgg gaaatcatcc tttagccagt ttaataatga      4680
     agcattatca cttgacgcag tttcacgctg gaccgcaatt gatgttgagc atcagccgtc      4740
     aacgatactg gatcatcaat ggaagaaact tggcacgaaa aattcatcat gaatgtttta      4800
     catgttttcg tgcccggcca ccttcaacgc acactcttat ggccgactta ccacctggaa      4860
     gagtcattgc tgcaaggcca ttttcaataa gtggaatcga ctattgcgga ccaatactgg      4920
     taaaaggcag ccatcgtcgc gcagttccta caaaagcgta tgtagcgatc ttcatatgct      4980
     tcatcactcg ggctgtgcac atcgagctgg tgtcaaacct aacgaccgaa gcatttctgt      5040
     cagcacttcg acgctttgtg gctcgccgtg gactaccatc tgaacttcat tcagataacg      5100
     ctaccaattt taagggagca tgtaatcaac tcaacgagtt ataccaaatg ttgcattcag      5160
     agcaacatct acatacgatc acttcatgga cattggagca tggcatatcc tggaagttca      5220
     tcccccctcg tgcaccacat tttggaggat tgtgggaggc agcagtgaaa tccatgaaga      5280
     cacatttggt acgtgtagtt ggaacgtcat ctctatcatt cgaggacatg acaacgctct      5340
     tagcagaaat tgagtgctgt ctcaattccc gtcctctcac ccctctcacc gatgatccct      5400
     ccgacatgaa cgctttaacg ccaggccatt tcctgatcgg ctctcacctg aaggatgtac      5460
     ctgacaacgt atcaacaacc ataccatcga accgtcttaa ccactggcaa caagtgcagc      5520
     aactgaagag gcgtttttgg gatcgctggc atcgggagta tttacagttg tttcaagtgc      5580
     gttccaaatg gttaaaagag atagatactc aaatcactat agggtcgctc gttcttgtca      5640
     gagaggaaaa tactccatca acacaatggc ctttagcacg cgtggtagag ctacatcccg      5700
     gacgagatgg tatagcaaga gttgctaccg tagtgaatag caagggtaca accatcacta      5760
     ggccaatcgt gaaactttgc gtattaccta aaatgtgtta aaattgcatt ttaaggtggc      5820
     agga                                                                   5824
//
ID   BEL-47_AnFu-LTR repbase;    DNA;    INV; 584 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-584
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 749-749 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 584 BP; 152 A; 134 C; 124 G; 174 T; 0 other;
     tgtttaggat tgaaagagcg cctcaagtat aagcaaaccg cgattcgata ttagcgccac        60
     ctatgagtga aaatagaata acaatttgca tgtacaggag gggtatttgg ggaaactgat       120
     tcgcatcgcc tactaaggta tttggagaaa ctgattcgca tcgccaatgg agatatttgg       180
     ggaaactgtt tcgcatcgct aacggagcaa tgccatagat cctttaaggc tcaggatttt       240
     gaaatacata catcgaatta cacagcaaag attttggagt tgaatttatt cgtatcccta       300
     aatcacccag tgtagagatc taaagcaagt ccttggcggg tagcgaactt tagacacctc       360
     tacacgttcc ccggtgtatt tagaatcatt gctgattttt ggtacctctc cccctgattc       420
     cacaagctat gtcggttggc ttgtccaacg actagtctgg ttccttcttc cttatttcct       480
     ttctctcaca agagttggtt agttcggcgt gtccaacagc caatcttgtt ccctttcctt       540
     cctcctttgg taccaaaacg ttccggagta ggccgtaccc taca                        584
//
ID   BEL-47_CQ-I repbase;    DNA;    INV; 2911 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_CQ_;
KW   BEL-47_CQ-LTR; BEL-47_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2911
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 247-247 (2011).
XX
DR   [2] (Consensus)
XX
CC   'ATTGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           423..2909
FT                 /product="BEL-47_CQ-I_1p"
FT                 /translation="MWKAMFTMKLEDAFQQRVHAMQKIANLRDVVHDLQHP
FT                 ALAQLTKLRQTLWSLYDEYGRAHSCIVGNVPDDDLAQQEVEYDAFDQLFDA
FT                 VSVPLEEKFIALTNANPKTSAMDYVAHQQKLWTIYESNYWDTPMMDCESAQ
FT                 PELSGQTANSNLRSRPENLETEVILRSHSPSTSYPSSPPKTRSRSQTLEAD
FT                 TALRSRMPPKIDPIRPSKPTSASDVLDTEVVMRDQLQPATNADPTDLPVSA
FT                 ISSEVTETSVQCVPLEPAQGNPNESGTGRVLPDDGTHMTGAPTPDSVLNHE
FT                 ASLIATDNGIEPQVEPDERWELAMPTVTTLLNTDRCSEDSGSRTEAEMMST
FT                 VLPIFPEPNLFNSKRSLTDGDARTNEREPLPAVILQNEKVNSLRVEHGSSL
FT                 TTIQRDAVTLQTRAELNPPLPTDAKAPDKRRLMIACPNTPLNDVHGNRKKH
FT                 AVNKTATPNLQKTNGVSPKIPDPLHAVLCRGTPHEQRPTSSTSGDLRDTEA
FT                 PEPNRVTHQHHEEKPPQKRKSETEQLTKTCVRSERKGGSKHALKRLQHRAA
FT                 PKKSTPTSEALNHRPLLNEPPGLPQRRRTITAVFWTCLKLNRTNGSPCCSR
FT                 CCSKLTSNLKATIVESRTKPKTKRSRSLWTTSSTTAAALVSMLQILLAFCH
FT                 TIHAKYYENDFVGCETSFPNNGRGPCEQIVAPQSVKVNRRVVSSQKVRLLR
FT                 LLAGWQRSKIPSNPPYSYSTVRMSRSCNRRYNGDSTYSRGCHPRKPIIQDV
FT                 SGRSLMNDSEPAHRKYSVGERTLGTKSGQPLNTMTTPSCSTETIVTGSNKP
FT                 ARSTLRFDIIHANLISKNVESMLQRGE"
XX
SQ   Sequence 2911 BP; 808 A; 922 C; 698 G; 483 T; 0 other;
     tatggtccta ccgacccgga ttggactttc gtgtgcgcgc cgccccgggg acatccggaa        60
     ggaaaattcc gactaagtgc gcaagaagaa aagctctggg attgagctcc ctgagccgta       120
     ccatcaccaa aacgttctgg aacattcggc tgcttgccga gtggggtcct tgtaagaatt       180
     tccggtgaaa aatgcataag aagtgaaccc agaaaaagaa ccttcctgct gcggcagtac       240
     agtgcaaaac agaagaacaa gaagatcctt cctgctgcgg cagaacagtg cgaaaagtga       300
     aacaaacccg tcgtctgtga agccatcatc cctctcgcgg aaaccacatt ccgctgccaa       360
     cgctgtaggc gagctgcagc gttccgcatc gattctgtag ccctttgatt ccccatttca       420
     ccatgtggaa ggcaatgttt actatgaagc tggaggatgc gttccaacag cgagtacatg       480
     ccatgcagaa gatcgcgaat ctccgggatg tcgttcacga tctgcagcat ccggcgttag       540
     cgcagctgac aaaactgcgt caaacccttt ggtcgttgta cgacgagtac ggccgagccc       600
     acagctgcat cgtcggcaat gttccggatg acgacctcgc ccagcaagaa gtggaatacg       660
     acgccttcga ccaactcttc gatgcagtca gcgtgccatt ggaggagaag ttcattgcgc       720
     tgacaaacgc caacccgaaa acgagtgcaa tggactacgt tgcacaccag cagaagctct       780
     ggacgatcta cgaaagcaac tactgggaca ccccgatgat ggactgtgag tccgcacaac       840
     cggagctctc aggacaaacc gccaactcaa atctacgatc caggcccgaa aacctggaaa       900
     cggaagtgat tttgcgaagt cactctccgt cgacgagcta cccgagctca ccacccaaaa       960
     cccggtccag gtcccaaacc ctggaagcgg atacggcttt gcgaagtcgt atgccgccga      1020
     agatcgatcc gatccgccca tccaagccca catccgcgag cgatgtcttg gacaccgaag      1080
     tggtcatgcg tgaccagctt caaccggcaa ccaatgccga tccgacggac ctcccagtgt      1140
     ccgcaatctc cagcgaagta accgaaacca gtgttcaatg cgtgcctctc gaaccggcac      1200
     aaggaaaccc caacgaatcc ggaaccggcc gtgtcctccc ggacgacggt acccacatga      1260
     ctggtgcgcc aactcccgac agtgtcctga accacgaagc aagtctgatc gcaacagaca      1320
     acggcatcga accacaagtc gaacccgacg aaagatggga actcgcaatg ccgacggtga      1380
     caacgctcct caacactgac cgctgctcag aggacagcgg atcccgaacc gaagccgaga      1440
     tgatgtcaac agtgctgcca atctttcccg aacccaacct gttcaactcc aaacgttcgc      1500
     tcacggacgg tgacgcacga acgaatgaac gcgagccgct accagcggtg atcctccaga      1560
     acgaaaaggt gaattctctc cgtgtcgagc acggcagctc cctgacgacc atccagcggg      1620
     acgctgtaac cctccagacc agagcagagt taaatccgcc gctgccaacc gatgcgaaag      1680
     cccccgataa acgacgccta atgatagcct gtcccaacac gccgctcaac gacgtccacg      1740
     gaaaccggaa gaagcacgct gtcaacaaaa ccgcaacacc caatctacaa aagacgaacg      1800
     gcgtttctcc aaagatcccg gacccgttac acgcagtgct ttgccgaggc acaccacacg      1860
     aacaacgacc aaccagctcg acttctggcg atctgcgaga cacagaagct ccggaaccca      1920
     atcgcgtgac acaccaacac cacgaagaga aacctccaca gaaacgaaag tccgagaccg      1980
     agcaactgac gaagacgtgc gtgcggtctg aacgcaaagg tggctccaag cacgccctca      2040
     aacggcttca gcatcgagca gcaccgaaga agagcacccc aacaagcgaa gcgctcaacc      2100
     atcgaccact cctgaacgaa ccacccggcc tgccgcagag acggcgcact atcaccgcag      2160
     ttttctggac ctgcctgaag cttaaccgaa caaacggcag tccctgctgc tcacgctgct      2220
     gctccaagct aacatccaac ttgaaagcca ccatcgtcga gtccagaacg aagcccaaaa      2280
     ccaaacgaag cagatcactt tggacaactt caagcaccac cgctgccgca cttgtgagta      2340
     tgctccaaat tttgcttgct ttttgccaca ccatacacgc caagtactac gagaacgact      2400
     tcgtcggttg tgaaaccagt ttcccgaata acggccgtgg gccgtgcgaa cagatcgtcg      2460
     ctccgcagtc cgtcaaggtc aaccgacgcg ttgtgagcag ccaaaaagtt cgcctactac      2520
     gattgcttgc aggctggcag cggagcaaga ttccgagcaa cccgccgtac agttactcca      2580
     cagtgcggat gtcccgaagc tgtaatcggc gctacaatgg cgattccacc tactcacgag      2640
     gatgccaccc ccgcaaaccg attatccaag acgtcagtgg acgaagcctg atgaacgatt      2700
     ccgaaccagc ccatcgaaag tactccgttg gcgaacgcac gctgggaaca aaaagcggcc      2760
     aaccgctcaa cacgatgacc acaccaagct gttccaccga gaccatcgtc actggatcaa      2820
     acaagcctgc acgctcaaca ctccgtttcg acatcatcca cgccaacctg atcagcaaaa      2880
     atgttgaatc gatgcttcaa cggggggagt a                                     2911
//
ID   BEL-47_CQ-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_CQ_;
KW   BEL-47_CQ-I; BEL-47_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-490
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 248-248 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 490 BP; 129 A; 149 C; 123 G; 89 T; 0 other;
     tgttccgtcc ggaatgagtt ttgcgtgcac acgagcgttc ctgaagggag cgcaaaccaa        60
     aacaaaccac acacgcaaag tggagggaaa acggcgcgtg caacgtcgag gaaaagtacc       120
     gctagttttg ctccacacca cgacgtcagc agtcagtagc attcttgctc cacctcccgt       180
     ccgagaagga ggcgtacgac acgcgaggac aagtttcgcc caacctcgac gcgaaccccg       240
     aaccggcttc cgaggaagta aacccgcgac cgcgcaacct ttgtagatcg acccagtaga       300
     gaaatacaga taagttaagt agtgtttaga agagttgccc tgctttcgcc taagtttgat       360
     ccgaccgcaa atccgatttc cgcctccgaa aggtggttcc tccgttgtcc accaagggtg       420
     accgcacccg agagtccgcc gtcgccaaaa atacagtcca cacgctccgt agttcggtcc       480
     cgaccgaaca                                                              490
//
ID   BEL-47_DTa-I repbase;    DNA;    INV; 5627 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   04-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5627
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5651-5651 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 5627 BP; 1743 A; 1387 C; 1270 G; 1221 T; 6 other;
     ttcttaaaaa ctttgtgtaa aagaaaaaaa actttgcata aagaatgcgc aattagccat        60
     aacattgcca cataccgaaa aactttattc ttaaaggctt gtgcgacgaa tttccaatta       120
     gccataacat tgtgaaattc ttaaaaacgc gtggttgccg ttataacagt acaattacga       180
     agcgacgcat ttgcaattag ccataacatt gtgaaattgc gatcgcatcc ctttcttgaa       240
     cgaaaggtga gagaaaacgt aatacgtaaa cggagccaac aaaccgcaga aattacgcac       300
     acaactacaa ttccgccaca cgccgagttc acataaccgt acaaaagtga acagagatga       360
     gcgaagaagt gtgcagaata tgcaagaaaa aagcgacagg aactgagcaa agctgggtcc       420
     aatgcgacag ttgtgacagt tggtaccact ttcgctgcgc aggtgtcggc gaagacgttg       480
     agaatagcga ctggaattgc gatttgtgcc ttgctggagg cagcgacgga atcccacttg       540
     gaaggacact gcgatcaccg ctcccaaatc agttcgacaa ctccatctta ttatccgtaa       600
     accagaataa gatcgagcag caagtgaact cgctcatcga tatggatagt cccggcgaag       660
     tacagattac ccccgacaac aactctaacg tcaacaaaaa ccagctaatg cttgacatgt       720
     tagaagaaaa aagagcttcc gaacagagat ttatagagga gaagtataaa attttactgc       780
     aaatgaacgt actaggcgga tcgacagccg ggctatttca ggcgaccccc gcatcaccct       840
     ccacttccca aatcgccgca agacaagcta tacccaagga gcttccttcg ttcagcgggg       900
     atcctgagga gtggccgatg ttcatcagta cattcgagca cagcacttcc gcagcaggat       960
     tctccaacgt tgaaagcatg ctccgtctac aaaagtgcct aaaaggcagg gcacgcgaaa      1020
     tggtaaagga taagcttcta cttcctagcc tagttccgga agtaatgagc acgctgaaaa      1080
     tgttcttcgg cagacctgag cacattctgg agaggatgat cgacaaggtg aggaagctac      1140
     cgccgcccaa agaaaaattg gaatccataa tagagtacgc gctcgcagtg cgcaacatct      1200
     gcgccacgat cgaagcatgc agcctagaag cgcatttaaa caacccaatg ttagtcaagg      1260
     agcttgtaga caaacttcca agtaaccaca aattaaattg ggcgatgcac tcccgcgacg      1320
     aatcagtccc tcccattaag gccttcagcg actggcttta caaaatagcg caggcggcat      1380
     cgactgtcgt gacaccgttt tctcacaaga ctagttctgt gaatacccac aatagttgcg      1440
     cagccagttc gagcsaggga tctgcagtcc agcaacmgcc tamtccaaag tgcatcgcat      1500
     gcgaatccac aaatcattgg gtaacacaat gcgaacaatt taaatccagc gccgtagagc      1560
     agagatggca agtcgctaaa gccggaaagg catgctttcg atgcttgaag cttcatcgaa      1620
     acaattgtcg accaaaggat tgcggagtaa acggttgtac cagaaagcat caccctctac      1680
     tccactcgga aaatgttccc aatacagcca acgaaacggg aaatcaaagg catgtaagca      1740
     cacaccaagg cgatgtagaa ggaaaccagt tcttccgaat cgtacccgta acattacatt      1800
     atgctgatca aaaaatggaa atcttcgctt ttttggacga aggatcatct gttaccctaa      1860
     tagacaaatc aatttttgac aagctcggta taaaaggttc accgtcaccg atttgtttgc      1920
     agtggactgg agaaacaacc cggttcgaaa atacttccgt gcgagcatca atccaaatct      1980
     caggcgtaag ctcagaaaaa cgttactggc tcaacaacgt tcagactgtc caaaacattg      2040
     cactgccaaa gcaaaccgtc gatatggatg agttgcgcag taagtacagc tatctaaagg      2100
     acctgccatt agagacctac tccacgcagc caatgttatt aattggaaca aacaactgga      2160
     aaatagccgt tcctcgcagg atccgcgaag gcaactggaa cgacccaata gcgtcaaagt      2220
     gcatgttggg gtggaccatc cagggatcgg caaactcaaa ccgtcacgta tctatgcacc      2280
     actgcgawtg caactggcaa gagcttcatg atgaagtgaa agagcaattc aacctcgagt      2340
     taactccgcc taaaaaactc ctttcaagcg aggacaagcg agcagtcgaa atcctagagc      2400
     agacttgtca gcacaaatgt ggaaaatatg aagttggact tctttggcgg aatgatcttc      2460
     aaaaacttcc cgaaagtcgc attaccgctc taaagcgcct acaatgcatg agaaacagaa      2520
     ttctgagcga accggatacg tttacgaaaa tcgacgacca aatcaaaaat cttcttacaa      2580
     aaggatacgc caagcaactg tccgacgagg aggcggagaa agaagaaact cgcacctggt      2640
     acttacccat ctttatagcc ttaaatccga ataagccagg aaaaattagg ctagtctggg      2700
     acgcggcagc aaaaacaaat ggaatatgcc tcaacgacct tctgttaagc ggaccggact      2760
     gcttaaaccc actcatcgac gttcttctag ccttcagagt cggaaaagtc gccgtaagcg      2820
     gcgacatcgc cgaaatgttc cacaggatca acattcgcca tgaggacatg cattcccagc      2880
     gctttctttg gtacgacgcc aaccgaaaca agataaacac ttacgtcatg cgtgccatga      2940
     cctttggtat tagttgcgcg ccattcatag cccactacgt gcgcgacaaa aatgctgaag      3000
     tccaccagca gcaattccct ttagccctgg atgcgattca gcgtgcgcac tacgtcgacg      3060
     acttcatcga cagtatgagt gatgaacaga aagccatcga aatatccagc caagtaagag      3120
     aggtccacgc cagaggcgga ttcgaaatcc gaaactgggc gtcaaattcg agtacagttc      3180
     tctcgtatct tatgaacgat ggagacgcca aaaatcagga gccagtgcag ttcggcgcta      3240
     cagaaaaggt tctgggtatg tactgggacc cacataacga tgtttttaag tttgtttgca      3300
     gattcacaag acttaagcga gatgtcctta ccgaccctgc agttccaacg aaaagagaag      3360
     tccttcaggt tctcatgtcg atcttcgacc ccttgggcct actgtcatgc catacgatcg      3420
     gattaaaaat tcttctgcag aaaatctggc gtgcaaatat cagctgggac caagagctgc      3480
     cagaatcact gttggatgac tggaaccaat ggaagctgtt actgcctcaa gtggcaacaa      3540
     ttaacattcc gagatgctac tccccaaaga tgtctgaaga gacccgaatc gaactgcaca      3600
     cgttcgtgga cgctagcgag catgcttact ccgctgcttg ctacctgcga gtatcacaaa      3660
     aagacgaggt ggacgtaata cttgtggccg cgaaaagcaa agtggcgcca ctaaaaccac      3720
     tatctattcc gcgcatggag ctccaagccg ccgtgatggg ctcacgctta gccaacaaaa      3780
     tcatcaacgt acgtaatctt cgagtcgacg atcttacgtt ctggtcggat tcacgaactg      3840
     ttttacaatg gctgkcgatg gatcctcgca actttcaaca atttgtgatg cacagaatcg      3900
     gcgaaatcct ggagaccacc cgagcggatc aatggcgatg ggtcccatca aaactcaacg      3960
     ttgcagacgc cgcaactaaa gttatcaaaa aaccttgtgt ggacacatgg ctttacggac      4020
     ccgagttttt gaaaagcaaa ccctgcaagt ggccaacaat tccatcacgg gcaacggaga      4080
     tcgatacgac cgaactacgc agacacatct ttacaactcg taatgcaaat aaagtcttac      4140
     tcgacgtgga ttatttctcc gattggcggc gcctttacag agccgtcgcg aacatgtttc      4200
     tatatatcca gcgactacag gcaaagtgtc aaaggaccta catgccgaca gcagtgaccg      4260
     agtttcacgt caaaaaggca cagacccttc tatacaaaga agcacagagg ctcgagttcg      4320
     cggaagaaat caattcattg aagtgcacaa aaccaataag cgcaaaaagc agattgactg      4380
     gcttgaacgc atatctggac gacaacggaa tcctgcgcac taaaggtcga gtgaacgcag      4440
     tcggatatac tawggacgcg ataatattgc ccccagagag tcgagtaaca tttttattgg      4500
     tccggttcta tcacgaaaaa tatcatcacc tcgctcacga aaccgtgata aacgatataa      4560
     aatccaactt ttatattctg cgcctaagag tactgcacaa atccataaga aaagcctgcc      4620
     aattatgtaa aaatcgtagc gctatgccac agcctccaca aatggccgct gttccaaagg      4680
     ctaggttgac aagctatgaa aaaccgttca cgtgcaccgg cgttgattat tttggcccta      4740
     tcctagtcaa cgtcggaaga cgcaaagaga agagatgggt tgcgctgttt acctgcttaa      4800
     ccctgcgtgc agtccacttc gaaatcgctc acagcctcga tacaagctcc tgcgtgatgt      4860
     gtttcaccaa tttcatggca cttcgtggga caccaagaga aatttactcc gataatggca      4920
     cgaatttcaa ggccacggaa aagacattgc gagaggagct gatcaagatc gactttgaca      4980
     aaattgcaat caagttcgac ggcattaaat ggctctttaa ccctccagga gccccccata      5040
     tgggcggcgc ttgggaaaga ttagtccgca ctaccaaaac ggtcctaaaa agcatctgcc      5100
     cgaattactc attcaacgac gaaagcctga ggtgtgctct gatggaagca cagttcatca      5160
     ttaactcgcg cccgttaact ttcgtcagcc tggactccga ggacgactct gcgctgactc      5220
     caaaccacct gctgatgggt tcatcaaacg ggtacaagcc gatcaaggaa gagaacatga      5280
     atttaagacg tcattggaac gaggtaaaac tctttggaga tcgcttttgg caacgctggg      5340
     tgagggagtt tacaccggtg cttactagac gcactaagtg gttcgaaaag tgtccccctt      5400
     tatcagttgg aagcgtagta atgatcgtcg acgaaaactt gcctaggaat ttatggctta      5460
     aaggacgagt gaccaacact gttaccgcca aggacggaca agttcgccga gccactatta      5520
     aaacgcagta tggagttctc gatcgaccag ctaccaagat tgcggttcta gatgtcggct      5580
     tagaagatgg taactgacca ccctagggtc aattacagga gggggaa                    5627
//
ID   BEL-47_DTa-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   04-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-47_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-338
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5669-5669 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 338 BP; 109 A; 59 C; 63 G; 107 T; 0 other;
     tgttgccgcc ataatttaag tttaattttt atttcaattt gttatatata agcactcgat        60
     atacaccccg aggtatcgat ataatatgaa atggtatcga tatggacctc attttcacgc       120
     tcgcgagaac catcgctaga aagggcagaa gcgaaataag agaagaaaga agacaaagtt       180
     tttaagcgtg ctccgcaacg caattttgta ttacacattg attcggaagc tgaaatttaa       240
     ataaagttaa ttttaaacac atagtttatt gctatccgcc tgtgtttcga attagttgtg       300
     tgggctgctg taaaaccaat tcagtttcgc tctcaaca                               338
//
ID   BEL-48_AA-I repbase;    DNA;    INV; 6791 BP.
XX
AC   supercont1.380;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_AA_;
KW   BEL-48_AA-LTR; BEL-48_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6791
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.380; Positions  372507  379297.
XX
CC   Positions [5010-5591] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3717..5999
FT                 /product="BEL-48_AA-I_3p"
FT                 /translation="MQELWSLSCDWDEPVPHTIRLKWENFRNELPKIVTYR
FT                 IDRYAFLPEARIELHTFADASTSAYGACTYARCENALGTVKIRLLASKSKV
FT                 APLKRLTIARLELCACVLAAHLHHRIKDSINVHVSTSYFWTDSAVCLYWLR
FT                 APPSSWKTFVANRVSEVQHYTHGGIWRHISGTDNPADLVSRGMSVEEFIES
FT                 AMWKHGPSWLAHPQQSWPISSPPDVVEDILETKNVVASIRTTPSVNPWFLQ
FT                 WSSYNRLLHVIAYCLRFAAKTRSKARTQPLATPTEIEFHQTSLTVKELANA
FT                 NAVLVRFAQEDVFQQEIKDLKRGNAVSKNSPVRRLSPFIDPDGVLRVGGRL
FT                 NLSQLPYQSKHPALLPKNHPFTWLIGEHYHRKLVHGGGRLLLSMIREEYWP
FT                 LNGRRLVHSIVRKCFRCSRQHPIPAQQQIGQLPASRVSPSRPFSNTGVDYA
FT                 GPLYIKPIHKRAAPAKAYLCIFVCFVTKAVHLELVGDLSTQGFLAALRRFI
FT                 SRRGIPAHLYSDNGKNFEGAKRELAELFARFRSNIEQSVIASACSEQGITW
FT                 HLTPPKAPHFGGLWEAAVKTAKRHLFRQLGSTRLSFEDYYTILHQIEAAMN
FT                 SRPLLPMSDDPNDLAALTPAHFLIGTSLHALPDPDFQHTHMSALDHLQKLQ
FT                 QHVQRFWSHWRTEYLQELMKDTKLAARNDEIQPGRMVIIVDDNLPTTRWPL
FT                 ARITELHPGRDNLTRVVSLRTEKGVITRPITRICLLPLPCLNPDEELPIDT
FT                 ISSSCAIEEK"
FT   CDS           join(667..2349,2353..3447)
FT                 /product="BEL-48_AA-I_1p"
FT                 /translation="MALQLQKATLLSRRATMIAALGRAEAFVNSFDPQRDQ
FT                 GQVALRLEYLNSMWTTLEEVQGQLEDIEDTEEGRLAHANVRADFEPRLFSI
FT                 KADLIAKLPVITQQARIPETPSHTSALSGLKLPTISLPEFDGDYMQWLGFH
FT                 DTFLALIHSNVDVPAIQKFHYLKAALKGEASQLIESIAISSANYDLAWQTL
FT                 VDRYANDYLLKKRHLQALFDIQSAKRETAASLHSLVDEFQRHTKVLGQLGE
FT                 PTGSWSSILEHLLCTKLPDDTLKAWEDHASTADDPNYDCLIEFLQRRMRVL
FT                 ESMLVNHHQSASASNGSAHVSKRQSHFRVSSCASTSASNSKCPACNQEHPL
FT                 IRCAKFYHFSNTERQQLVSSKRLCHNCLKGDHFAKYCPSNYRCKHCSKRHH
FT                 SMLHSGENSRQNSEPSSSRTSMPTQAIQSSVSSVAEPTAQSSVAASEGVPR
FT                 VVVSASAPQPREDVFLLTVLVKVVDAYGQDHFARALLDSASQPNLITERLA
FT                 RRLHLKRSSVNVTIQGAGNLSKKVRESIFARIKSRNDGFECGVEFLLMDTV
FT                 TADLPAQDISVKEWIPENLALADPTFNKSQQIDMVLWAKHFHAFFPSTARL
FT                 QLAENLPILVDSVFGWVVTGSASMNYSVQQKPVTSSVVAVSMLTLEESMER
FT                 FWKTEELKINDGFSIEECRCEDLYQSTTCRDETGRYIVRLPRKPDFDAMLG
FT                 ESKTCALRRFDQLERRLDRDQKLKEEYHDFMKEYLSLGHMRLVETDDGNHS
FT                 HTYYLPHHPVIKEESTTTKVRVVFDGSARTSTGFSLNEALCVGPVVQDDLL
FT                 AIILRFLTYPVALVGDVAKMYRQVLLHPEDCPLQRILFRFSKDMPVQTYEL
FT                 RTVTYGLSPSSFLATRTLQQIAKDEGKAYPLAGPSVPKNFYVDDYVGGANS
FT                 IEEAIQLRGEAIRNALKKAVSF"
XX
SQ   Sequence 6791 BP; 1727 A; 1758 C; 1579 G; 1727 T; 0 other;
     taatttggtg ccgtgaccag gatcctcgac gccatcatgg aacgtaggaa tcacgtgtga        60
     cgatccactg ggcgctgcca tcttgcgcgc gccataccac tggaggaatt taattgtttc       120
     aaggctcgaa tcaatcgggc atcaggtaat tacctgtccc aagcgctttg gaggctcaca       180
     ggtgcccttt agatattgtt tcatctcttt gcatgatctt cctgtcgacg ggcggagatt       240
     ttcgattgca gccacacagt tttggggcac gctcttcgtc cagatacgcc atcgtgagga       300
     cattccgtcc ggactattca cgtcgtccga ctaccgccat cacgtttcgg acattgtagt       360
     ggaataatag tcgcttccca agccacgcca tcccgccatt gtttcctgat agttcggtgg       420
     ctttgcggag gcatccacgt cttttcaacc accttggtga cgccattccg gcgtcgtgat       480
     tgcggtgaat tccttcgaag gatttttgga ttttttggaa atacaaggca catacttgcc       540
     ttggaactgg tgagtaccat tccaagtggc tttttctttt ctctgcgggc ctaccgtggt       600
     cttttcgttt ggcagatccg ttcgtcgcca tcatcaatca ccagtcctat cgcttctgct       660
     ttcggaatgg cgcttcagct gcagaaagcg actctactgt cccggagagc cacgatgatc       720
     gccgcgctgg gtcgggcaga ggctttcgtg aattccttcg acccacaacg tgaccaaggg       780
     caggttgcgc ttcggctgga gtacctcaac agtatgtgga ccacgctgga ggaggtgcag       840
     gggcagctgg aggacatcga ggacaccgaa gaaggtaggc tagctcacgc aaatgttcgt       900
     gccgattttg agcctcggct gttttcaata aaagccgact tgattgctaa acttcctgtt       960
     atcactcaac aagctcgcat ccctgaaact ccctcgcata cttccgctct ttctgggttg      1020
     aaacttccga cgatctctct tcctgaattc gatggggatt atatgcagtg gctagggttt      1080
     cacgatacgt tcttggcttt gattcattcg aacgtagatg taccagcgat tcagaaattt      1140
     cactatttga aagcagcttt aaaaggcgaa gcgtcgcagc tcattgagtc tatcgctatt      1200
     agttctgcca attatgatct ggcgtggcaa acgttggtgg acaggtacgc taatgactac      1260
     ttattgaaga agcgacatct ccaggcactt ttcgacatcc aatcggcgaa gagagaaaca      1320
     gctgcatcat tgcactcgct agtggacgaa ttccagcgtc atacgaaggt tttgggtcag      1380
     ctaggagaac cgacaggctc ttggagcagc atcctggagc atctcttgtg cacgaagctt      1440
     cctgacgata cactgaaggc ctgggaagac catgcgtcaa ccgccgacga tccgaactac      1500
     gattgcctta tcgaatttct tcagcgtcgt atgcgagtgt tggaatctat gttggtgaat      1560
     catcatcagt cagcgtctgc atcaaatggg tctgcacatg tctccaaacg acagtcccac      1620
     ttccgtgttt cttcgtgcgc ttccacttct gcttctaaca gcaaatgtcc ggcatgcaat      1680
     caggagcatc cgctgataag atgtgcgaaa ttctaccact tttcgaacac agaaaggcag      1740
     caactggttt cgagcaagcg tctatgccac aattgtctca agggagacca ctttgctaaa      1800
     tattgtccgt caaactacag gtgcaagcac tgcagcaagc gtcaccattc catgctccac      1860
     tctggcgaga attctcggca aaatagcgaa ccatcttcct ctcgtacatc catgccaaca      1920
     caagctattc agtccagcgt ttcctccgtg gcagaaccga ctgctcagtc cagcgttgca      1980
     gcatccgaag gtgttcccag ggtcgttgtc agtgcttccg ctccacagcc tcgtgaagat      2040
     gttttcctgt taacagtatt ggtgaaggtt gtcgacgcct atggtcaaga tcattttgct      2100
     cgtgcattgc tcgatagcgc ttctcagccg aatctcatca ccgaacgctt ggctcgccgg      2160
     ttacatttga aaagaagttc tgtaaacgtg actatccagg gggctggaaa tctgtccaag      2220
     aaggtgcgtg aatctatttt cgctcgtatt aagtcaagaa atgatggttt cgaatgcggc      2280
     gttgagttcc tactaatgga tacagtgact gctgatttac cagcacagga catttccgtc      2340
     aaagaatggt gaattcctga gaatttagcg ttggctgatc ccacattcaa caaaagtcaa      2400
     caaatcgaca tggttttgtg ggctaagcat ttccatgcat tctttcccag taccgctcgt      2460
     ctccagctgg ccgaaaatct tccgattctg gtggatagtg tgttcggatg ggtcgttacg      2520
     ggatcagcaa gcatgaacta ttccgttcaa caaaaaccag tcacttctag cgtcgtcgca      2580
     gtctccatgc tgacactaga agaaagtatg gaacgatttt ggaagaccga agagcttaaa      2640
     atcaatgacg gcttctccat cgaagaatgc cgctgcgaag atttgtatca atctaccacg      2700
     tgccgggatg aaaccggccg gtatatcgtc cgactgccac gaaagcccga ttttgatgcg      2760
     atgttgggag aatcaaagac ctgtgctctg cgacgtttcg atcaactcga gcggcgactc      2820
     gatcgggacc agaaattgaa ggaggaatac cacgatttca tgaaggagta cctctccctc      2880
     ggccatatgc gactggtaga gacggatgac ggtaatcact cccacacata ctatctaccc      2940
     caccaccccg tgataaagga ggagagtacg actacgaagg tgcgagtcgt gttcgacggc      3000
     tcggcccgta cttcaaccgg cttctcgctc aatgaagccc tctgcgtggg tccggtggtc      3060
     caagatgacc ttctcgccat tatcctccgc tttctgacct accccgtagc tctagtcggc      3120
     gatgtagcga aaatgtaccg acaagtcttg ctacacccag aagattgtcc tctgcaacga      3180
     atcctttttc gattttctaa ggacatgccc gtccaaacat acgagctgcg aactgtgacc      3240
     tacggtctat caccctcttc gtttctagcg acgcgtacgc ttcagcagat tgcgaaagat      3300
     gaaggcaaag catatccgct agctggccct tcggtcccca aaaatttcta tgttgacgac      3360
     tacgttggtg gagcaaactc tattgaggaa gctatccagc ttcggggaga agctatccga      3420
     aatgctttaa aaaaggcggt ttcgttctga ggaaatgggc ctcgaatcgc ctggaagtgt      3480
     tgcagggact tgaaaatgac cagattgcga ctcagtcaag tttgcaattc tgtccggacg      3540
     aatccattaa agcgctggga atccgttggg aaccagaaac cgatcaactt cgttttgatt      3600
     cccaggttca gccacgagat gatcctccga cgaagcgttc tatactatcg gatatagcta      3660
     gactctttga tccactcggt ctgattgctc ctgttgtagt tacagcaaag atcctaatgc      3720
     aagaactgtg gtcactctcc tgcgactggg acgagcctgt accgcatacc attcggctga      3780
     agtgggaaaa ctttcgaaac gagctaccga agattgtaac ctaccgaatc gaccgatacg      3840
     ccttcttgcc ggaggccaga atagaactgc acacctttgc cgatgcctca acgtccgctt      3900
     atggagcatg cacatacgcc cgctgtgaaa acgccctggg aaccgtcaag atacgattgc      3960
     tagcatcgaa gagcaaagtc gcaccgctta aaagactgac catagcccgt ctcgaactgt      4020
     gcgcttgtgt cctggctgca catttgcacc ataggataaa ggactcaatc aacgtccacg      4080
     tgtccacctc ctacttctgg acagactcag ctgtctgttt gtactggctt cgcgctcctc      4140
     ctagttcctg gaagaccttc gttgccaaca gggtttcgga ggtacagcac tacacccatg      4200
     gtggcatttg gcgccatata tccggtactg ataatccagc agatttggta tcacgaggaa      4260
     tgtcggtgga agaattcatc gaaagcgcca tgtggaagca tggtccgtca tggttggctc      4320
     acccgcagca gtcctggccg atctctagtc cacctgatgt cgttgaggac atcctggaga      4380
     cgaaaaatgt agttgcatcc atccgaacaa cacccagcgt caacccatgg ttccttcaat      4440
     ggtcatcata caaccggtta ctccacgtta tcgcatactg cttacgcttc gctgccaaaa      4500
     ctcgttctaa agccagaact cagccacttg caacccctac agagatcgaa ttccaccaaa      4560
     cgtcgcttac cgtcaaagaa ctcgccaatg ccaacgccgt tttagtccgt ttcgcccaag      4620
     aagatgtatt ccaacaagag atcaaggacc tgaagcgagg aaatgcggtg tcaaaaaact      4680
     cgcctgtgcg tcgtctatcg cctttcatcg acccagatgg agtattgcga gttggaggtc      4740
     ggctcaacct atctcagctt ccctaccaat cgaaacaccc tgccctcctc cctaagaacc      4800
     atccattcac ctggttgatt ggcgagcatt accatcgaaa acttgttcat ggcggcgggc      4860
     gtcttcttct gtccatgatc cgtgaagaat actggcctct caatggtcgc cgattagtcc      4920
     acagcattgt ccgcaaatgt ttccgttgct cacgtcagca tccgattccg gcgcaacaac      4980
     agattggcca gctaccagct tctcgagtgt caccaagtcg tccgttctcc aatacaggtg      5040
     tcgattatgc tggtccgcta tacattaaac ccattcataa acgtgccgcc cccgctaaag      5100
     cttacctgtg catattcgta tgctttgtaa caaaagccgt tcacctagaa ctcgttggag      5160
     acctatctac ccagggattt ctagcggccc tacgccggtt catatcaaga aggggaattc      5220
     cagcccactt gtactcagat aatgggaaaa atttcgaagg tgcgaagcgt gagctggctg      5280
     agttgtttgc cagattcagg agcaacattg aacagagcgt aatcgcttct gcctgctccg      5340
     agcaaggaat tacatggcac ttgactcccc ccaaggcacc acatttcggt ggcctatggg      5400
     aagcggcggt caagactgcc aaacgacatt tatttcgcca gttgggaagt acaagattat      5460
     cttttgaaga ttattatact attcttcatc aaatagaagc tgcgatgaac tctcgtcctc      5520
     tgctgccaat gtcggatgat ccgaatgatc tcgctgcgtt gacgccagcg cacttcctca      5580
     tcggaacctc gctgcatgcc ctgcccgacc cagacttcca gcacacacat atgagcgccc      5640
     tcgatcatct ccaaaagctt caacaacacg tccagagatt ttggagccac tggaggacgg      5700
     agtatctgca ggagctgatg aaggatacga agcttgctgc acggaacgac gaaatccagc      5760
     ccggtcgaat ggtcatcatc gtagacgaca atttgccaac aacccgttgg ccactagccc      5820
     gcatcaccga attgcatcct ggaagagaca atttaacacg agtggttagc ctccgcactg      5880
     agaaaggtgt catcacaaga ccaattaccc gaatctgttt gctgccgctt ccatgtttga      5940
     atcccgacga agaactacca attgatacaa tcagcagttc ctgtgccatt gaggagaagt      6000
     aattttgatt attatctgaa aagatattag aaaacacaaa ttagttattg aacactcacc      6060
     tgtatctacc tgagacgaga ctcgcgaaga ggaaaaaaag caacgtcata tgcagcccag      6120
     atttcgctgt cagatgcagc cagttgattt tgtgagcgaa tatgtggaga gtattggaat      6180
     cattcataaa aaaaataatt cagcgaaata ttccatttga tttgcgctga cgaaactaaa      6240
     tcgaaacaag caaaacattt gttattgcaa tgtttactgc gtttgcggat atgaaattta      6300
     tcttgaaaag gttttctgaa cttggaacga tgcaatcgca attcatcttt gccattgagt      6360
     tcatgtaaaa gcttgaacat cttgctcaca aatttgtgta aacacagaat cgaagaagaa      6420
     aatcttagca accgtagaaa aagaagaccg acttcgcgag tctcgtctca ggtatctact      6480
     acacttagat taggacacag tttgtttttg tttacctttt tttatgttga acacaatcgt      6540
     tcaaggcggc gggtatgttg aatcattggc cacactgcgt gagaaatcat cttctcactg      6600
     gagtgacggt gctaacgttc gtccaattcg acgagatttt cagtgcctct ggcagctcgg      6660
     ccaacacagc tgatcgcgtc gagaggtgaa aaccagccta ctcgcccgtc agtaatcatc      6720
     agtctcgttc aactgccgta gcgtaaagat cacctagaaa ggaaaataaa tcgttagtta      6780
     aagtgtaaaa g                                                           6791
//
ID   BEL-48_AA-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   supercont1.380;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_AA_;
KW   BEL-48_AA-I; BEL-48_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-288
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.380; Positions  372219  372506.
XX
SQ   Sequence 288 BP; 69 A; 70 C; 65 G; 84 T; 0 other;
     tgtaaagtta cttgctaata aagttgcatg ccaaaagact caagtgcagt gtctaaatct        60
     aagagaagaa acttacctgt gttcgctaga ttgtgatgtg tgatagctgt tttttctgct       120
     gctgctgttg agtttgtttt gcctcgccgt ctgttaactg tgccgctgtt ggattgccac       180
     ccaagctacc acccactcga ttgctgccgg agaacagttt gcgtcgccag tggttcctca       240
     tcgccctcaa tttaccacca gaagacacaa cgtaggtaag cgccaaca                    288
//
ID   BEL-48_AnFu-I repbase;    DNA;    INV; 5408 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5408
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 695-695 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..5371
FT                 /product="BEL-48_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSNPELTAFVDVQAASSPIETQASMAGIIGRYHAHIL
FT                 RRLESLKVALESTQDADASYLQECTEQLKSIASSFESKYTAIMESSNAIST
FT                 EEEERQYAEVEQRRFELSVALKRREAALCASANVTHSPGVSNPKSKVRLPE
FT                 IPLPKFEGTLEAWPTFRDAFGSMIDQHPSLSDVDKLIYLKRVVSKEAAQVI
FT                 EAVETTAANYNIAWELLKSRYENKKVLVRRYLEELFAIPAAKRESFESLTN
FT                 LLDGFERAIKMVEKVGVVTNGWSVLLAHMLCDRLDANTRKLWETHHRSVEV
FT                 AEYTEIVQFLKQHVVVLQALPQTKEQVSTSTHTNHGRQKLKQACATLNVIA
FT                 EKCVFCSQDYHSAFKCQTFRNLSVMERYNLIKAKGLCINCLAADHRVKECA
FT                 SSTCRVCKLKHHTMLHRSPVETTPNPNTSVAAADGDPAQPVESKRETGNQA
FT                 VMLTPAEMKAVPVTTTAVLLPTVLVTVWTPDGNQTIARALLDGGAQINLIT
FT                 ERLVQRLRVTKQRDHQTIGAVGRGSQTSSHSVNVTIGSQVTNVCYPLRLHV
FT                 LSEIMWNLPPAKVDQQLWEIPKNIRLADPTCGEVGNIDMLLGREVYNDILM
FT                 DGVLRLQSKCDKLLLQETQLGWIVSGKSSVLQNQRPHLVNLTCSEPALDEQ
FT                 LTKFWEIESCHTLSTFSPEESKCEDIFDRTTKRGPDGRYIVALPKDRVKIK
FT                 KLGSSYTIAKRRLHSLSRRLNANPELKAQYQEFLNEYLRLGHMVEIDPDPV
FT                 NEKIAYYMPHHCIVRPDSLTTKLRVVFDASCSTDSGISLNDALLVGPVIQE
FT                 DLLSIILRFRMPKYALTADIEKMYRQVWIAEADRPLQRILWEDTEHGGIRT
FT                 YQLKTITYGTSSAPYLATKCLQALSKEAKESHPVASQTLATDFYMDDMISG
FT                 VDTVEQGKRLCEEMAELLQSAGFPLRKWASNSEQILSTLPTQLRQMGSELL
FT                 IDPNKSIKALGLKWSPKADSLGFDIPKWNCDEQISKRSVVSDTARLFDPLG
FT                 LIGPVIVIAKCFLQELWERKIDWDQPLDGDLRQRWMNFKQDMTHVAEITVP
FT                 RRVIAEGAEVIELHGFSDASEKAYGACIYMRTTSVYGTIKAELMCAKSKVA
FT                 PIENGRKQKRVTLPRLELSGALLLCHLWKKLQSSLKRDIKCTFWVDSTIVL
FT                 HWIAGNPSRWKPFVANRISEIQHIAGQSRWYHVAGADNPADIISRGMSPSQ
FT                 LKENETWWHGPKWLSQPINWVEQTNVPNAVFSPEEMEERSIAMTISNSGVN
FT                 PIFGLRSSYPSLLRMVAYILRFRYNSQSVNRTQRRKGILSSNELQKAETTL
FT                 IRISQAESFAEDIADIRRDGQVKHKSSLKALAPVLKDGILRIGGRLRNAPV
FT                 SETRKHPILLDSKHPLAILIMQSYHQQLLHAGPQLLVATIRERFWPLRVRN
FT                 LARRVVHECVKCFRSRPTTMQQIMGDLPSERVTPTATFANTGIDLCGPLWY
FT                 RLAPRKATPMKCFVAVFICLVTKAVHLELVADLSTQAFIAALKRFVARRGK
FT                 PRTISCDNAKNFRGAERALKELAGLFDMQQTKHAITSHCLNEGIEFKFIPP
FT                 RAPNFGGLWEAAVKSFKRHLKATIGATILLKEDLETLIIQIEACLNSRPLT
FT                 PMSSDPEDLEVLTPGHFLINRSLVSILEPSYADININRLDRWQKNQEFLRR
FT                 VWKQWQTDYLSGLQPRTKWSSKRDNIKEGTMVLVKEDNLPPLKWAIGRITL
FT                 TYKGQDNHVRVVQVKTKDGVYRRAISKLCILPGQDKLEFEKE"
XX
SQ   Sequence 5408 BP; 1627 A; 1180 C; 1333 G; 1268 T; 0 other;
     taaaaattgg tccttcgaac cggatcccat tagttactga ttaattggca atcgttttaa        60
     gaagtttgtg ttgtttaata atagaatgtc taatccggag ctaacagcgt ttgtggatgt       120
     gcaagcggcg tcgagtccga tcgaaacgca agcctcgatg gcgggaataa tcgggcgtta       180
     ccacgcacat atactacgcc gtttggaatc gctgaaagtg gctttggaat caacgcagga       240
     tgctgatgca tcatatcttc aagagtgtac ggagcagtta aaatccatcg catcatcctt       300
     tgagagcaaa tacacggcga tcatggaaag cagcaatgcc atcagtacag aggaggaaga       360
     gagacaatat gcagaggttg agcagcgacg cttcgagttg tctgtagcgc tgaaacggcg       420
     cgaagcggcg ttgtgtgcgt cggcgaacgt tacgcactcg ccaggagtgt caaaccccaa       480
     atcgaaagtg cgtttaccag aaattccgtt gcctaagttc gaaggcacgt tggaagcttg       540
     gccgactttc cgtgacgcat ttggtagtat gattgaccag catccgagct tatccgacgt       600
     cgataagctc atttacctga aacgcgtggt atccaaggag gcagctcaag tgattgaagc       660
     agtggaaact acagcagcca attacaacat cgcatgggaa ctacttaaga gtagatacga       720
     gaacaagaaa gtattggtgc gccgttattt ggaggaactc ttcgcaattc ccgcggcaaa       780
     gcgtgaaagc ttcgagtcac tcaccaattt gctggatggc ttcgagcgag ccatcaaaat       840
     ggtcgaaaag gttggtgttg ttacaaatgg ctggagtgtg cttctagccc acatgttgtg       900
     cgatagatta gacgcgaata ctcgaaagct atgggaaacg catcaccgaa gtgtagaagt       960
     ggctgaatac actgaaatag tgcagttttt gaagcagcat gtagtagtgt tacaagcatt      1020
     gcctcagacg aaggagcagg tatcaacgag cacacacacc aaccacggac gacaaaagct      1080
     aaagcaggca tgtgcaaccc tgaacgtgat tgcggaaaaa tgcgtttttt gttcgcaaga      1140
     ttaccactcg gcgtttaagt gccagacttt tcgtaatctt tcggtgatgg aacggtacaa      1200
     cttaatcaag gcaaaggggc tttgcatcaa ttgtttggca gcggaccatc gcgtaaagga      1260
     gtgtgcatcg agtacgtgtc gagtgtgcaa attaaagcac cataccatgt tacataggtc      1320
     gccagtcgaa acaaccccca accctaacac ttctgtagct gctgctgatg gagatcctgc      1380
     gcaacccgtc gaatcgaaaa gggaaaccgg aaatcaggcg gtgatgctaa ctccagctga      1440
     gatgaaagcc gtacccgtaa ccacgactgc tgttttactc ccgacagttc tagttacggt      1500
     ttggacacct gatggaaacc agacaattgc acgagctcta ctcgacggtg gggcacagat      1560
     caatctaatc accgaacgat tggtccagcg actacgagtt accaaacaac gagatcatca      1620
     aacgattggt gctgtaggca gaggcagcca aacttcatcg cattcggtaa acgttacaat      1680
     aggttcgcaa gttactaatg tttgttatcc tttaaggttg cacgttctgt cggaaattat      1740
     gtggaatctt ccgccagcta aagtagatca gcagctttgg gaaataccga agaatattag      1800
     gcttgccgac ccgacttgtg gtgaagttgg taacatcgat atgcttctag gcagagaagt      1860
     atacaacgac atactgatgg atggagtact aagacttcaa tcgaagtgtg acaaattgct      1920
     gctgcaggag acccaattgg gttggattgt ttcgggaaag tcatcggtac ttcagaatca      1980
     gcgaccgcat ctcgtgaatc ttacctgtag cgaaccagcg ttagatgaac aacttaccaa      2040
     attctgggaa atcgaatcat gtcacacgtt aagtaccttt tcacccgaag aatcgaaatg      2100
     cgaagatata tttgatagaa ccactaagcg agggccagat ggaagataca tagtcgcact      2160
     tccaaaggat cgagttaaga tcaagaagct aggatcctcg tacaccatcg ccaaacgacg      2220
     actccactcg ttgagccgtc ggcttaatgc caaccctgaa ttgaaggcac aatatcagga      2280
     gtttttgaat gaatatctgc gattagggca catggtagaa atcgatcctg atccagtaaa      2340
     tgaaaagatt gcttattaca tgccgcatca ttgcatcgta cgaccggaca gtctcacgac      2400
     gaaactacga gtggttttcg atgcctcttg ttcgacggat tccggaatat cattaaatga      2460
     tgcattgcta gtcggtccgg taattcaaga agaccttttg agcattatat tgcgttttcg      2520
     tatgccaaaa tatgcgctaa cggcggacat cgaaaagatg tatcgtcaag tatggatagc      2580
     agaagcagac cgtccgttac aacgcattct ttgggaagat acagaacatg gtggaattcg      2640
     tacgtatcaa ctgaaaacta ttacatatgg aacatcatca gctccatact tggccaccaa      2700
     gtgtctgcaa gcattatcaa aagaggcaaa ggaatcgcac cctgtggctt cacaaacctt      2760
     ggcgacagac ttttacatgg acgacatgat tagtggtgta gacactgtcg aacaaggcaa      2820
     gcgtttatgc gaagaaatgg ccgagttgtt gcagtctgct ggttttcctc taaggaagtg      2880
     ggcatctaat tcagagcaga ttttgagtac gcttccaacc caactgcgtc aaatgggttc      2940
     ggagctgttg atagatccca acaaatccat caaagccctt ggattaaaat ggtcaccaaa      3000
     agcagacagc ctaggtttcg acatacccaa atggaattgt gacgaacaaa tttccaaacg      3060
     cagtgttgtt tccgacacag cacgcttgtt tgatcccttg gggctaattg gaccagttat      3120
     tgtaatcgca aaatgcttcc tgcaggaact gtgggagaga aagatcgact gggatcaacc      3180
     gctggatgga gacttgcgac aaaggtggat gaattttaag caagacatga ctcatgttgc      3240
     agagataacg gtcccacgtc gagtgatagc tgaaggcgca gaagtcatag agttacacgg      3300
     ctttagtgat gcatcggaaa aggcgtatgg tgcctgcatc tatatgcgaa ctacatcggt      3360
     atatggtact ataaaggcag agctgatgtg tgccaagtcc aaggtagcgc ctattgaaaa      3420
     tggaaggaaa cagaaaagag taacgctacc aaggttggaa ttgtcgggcg ctttattact      3480
     gtgccatttg tggaaaaaac tacagagcag cttaaaacgc gacataaagt gcacattttg      3540
     ggtggattca acgatagtgc tgcattggat agctggaaat ccgtcgcgat ggaagccgtt      3600
     cgtcgctaat cgtatctcgg agattcagca catcgcaggc cagagtagat ggtaccatgt      3660
     agcgggtgca gacaatccag cggatattat atccagggga atgagcccta gccagctgaa      3720
     ggaaaatgaa acctggtggc atggaccaaa atggttgagt caaccaatca actgggttga      3780
     gcagaccaat gtaccgaatg ctgtgttttc tccagaagag atggaagaac gttccatagc      3840
     aatgactatt agcaacagtg gggtgaatcc cattttcggc cttcgatcat cgtatccatc      3900
     attattgagg atggtagcat atatccttcg attccggtac aacagccaaa gcgtaaatcg      3960
     aacccagcgt cgaaagggaa tattgtcaag caacgaacta cagaaagctg aaaccacatt      4020
     gattcgtatt tcacaagccg aaagctttgc agaagatatc gctgatatcc gacgagacgg      4080
     gcaagtgaag cataagtcca gcttaaaggc acttgctcct gtattgaaag atggtatatt      4140
     acgtatcggc ggtagattaa gaaacgctcc agtatcagaa acgcgcaaac atccgatact      4200
     actcgactca aaacatcctc tagcgatcct catcatgcaa tcgtaccatc aacaactatt      4260
     gcacgcgggc ccgcaactac tagtagctac gattcgggaa aggttctggc ctttgcgagt      4320
     gcgcaatcta gcacgacggg tggtacacga gtgtgtgaaa tgctttcgca gcagaccaac      4380
     tacgatgcag cagataatgg gtgatttgcc atcagaaaga gtcactccaa cagcgacatt      4440
     cgctaacacc ggaattgatc tgtgtggacc gctatggtat cgactagcac cacggaaagc      4500
     caccccaatg aaatgttttg tcgcagtgtt catctgcctg gtgactaaag cagtacactt      4560
     ggaactcgta gcagatttgt caacccaggc gtttattgca gcactgaagc gtttcgttgc      4620
     aaggcgagga aaaccaagaa cgatatcctg tgacaacgca aaaaactttc gtggagcaga      4680
     acgagccttg aaggagttag ctggcctttt cgacatgcaa caaacgaaac acgcgattac      4740
     atcccattgc ctcaacgaag gaatcgaatt taaatttatt cctccacgcg caccgaactt      4800
     tggaggttta tgggaagcgg ccgtcaagag tttcaagagg catttaaagg caacaattgg      4860
     cgcaaccatc ctgttaaaag aagatctcga gacgctcatc atccaaatcg aagcctgctt      4920
     aaactctcga ccactcacac caatgtcatc cgaccccgag gatttagagg tactgacacc      4980
     tggtcacttc cttattaatc gtagtttagt gtccatttta gagccatcgt atgctgacat      5040
     caacatcaac agattggatc gatggcaaaa gaatcaagag ttcctgagac gcgtatggaa      5100
     gcaatggcaa accgattact tgtcgggact acaaccgcgg acgaaatgga gtagcaaacg      5160
     cgacaacata aaggaaggga cgatggtact cgtgaaggaa gacaatttac ctccgctgaa      5220
     atgggccatt ggtaggatca ctctaacata caagggtcaa gataatcacg tgcgagttgt      5280
     tcaagttaaa acaaaagacg gagtgtatcg acgggcaatt tcgaaactgt gcatattacc      5340
     ggggcaagac aaattagaat ttgaaaagga atagtagaaa gtcgaagacc tttccacggg      5400
     gggcgaaa                                                               5408
//
ID   BEL-48_AnFu-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-192
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 750-750 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 192 BP; 68 A; 32 C; 46 G; 44 T; 2 other;
     tgttaaggat tgaggataga gcatcgaack gaaggagtca agcaggaagg ataaacgccg        60
     ctcacgagcg atcccgagtg cgtatcgggt taggattaga attaagatag aagttaagaa       120
     taaastagta ttgtaataga agcaaaaccg aacgatcgcc aatttatttc ctcgtctaca       180
     atttcgctaa ca                                                           192
//
ID   BEL-48_CQ-I repbase;    DNA;    INV; 2812 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_CQ_;
KW   BEL-48_CQ-LTR; BEL-48_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2812
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 249-249 (2011).
XX
DR   [2] (Consensus)
XX
CC   'GTACT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1249..2811
FT                 /product="BEL-48_CQ-I_1p"
FT                 /translation="MELKSARSLTIKRNFVKGKISRVVDRLKAFEENHQLP
FT                 SFAQIQVFVWNVEKYYGEFNKVCDEFKVSDADAGERFNHDIEWARVVSLIQ
FT                 EANMRIVALNNALLSQPVHAAEKQPVLKEEANRTPLPTTEARGEVDSSGAG
FT                 DLPDAANAERCHADDREPGAPDTKVGAHFELYSSPPIADSERNEPMCTLCN
FT                 GCRSDIDCFPVRGDPVEQCQPLEESNPNLSSQKRLPGESHEPETQPAVHAI
FT                 LPPEEPEVVPHESSSDDRGSAETKPGLCSPQRLPGDSREPENRQEESSKEP
FT                 AVVPHESSAAERGSAVSDDPEAVPMPEQAQHVDVVPDVDTCQAVEGVSLLP
FT                 AVPDDENNEEGAQCGCTEPARSSVQVVWTTNQNARKANKNIEIDQRTCTSH
FT                 ESVTYLYSQRTELYERCCGDSIARSGADGADEPGRAVEKLHDPAIFSSTTK
FT                 RPRFVWDPGVELNAAFAPYNRGRPPTDANRCKELLARLVAMNLEPSAINGI
FT                 SQYERLRPAQRVGEAEAVTPQPGGR"
XX
SQ   Sequence 2812 BP; 720 A; 731 C; 879 G; 482 T; 0 other;
     tttggtcctt acgatccgga tagacagttg gcctattgat ccggtaagtc cgtcggaatc        60
     gccacgagtg tctcgaggag gaagaatgct cgtgtaagaa gaagttcgcg agcagtgatc       120
     cggaagacgt tgattcccgg agggcgttcc acgcggcccg gaacagcgtt gggaaaaacc       180
     gtgtctgtgt ggtgatccag cagatcgacg gtccggaacg cgcgtgtggt cgaaccagcg       240
     acgcgtagtg cacggaagcg gtcccattgg ccgccggaag cacggtagtg agccggaagt       300
     ggtcgttggc caccggcaga agtaaatgga cgttgtgaac tttgcgagga aggtgatccc       360
     attggccatc tgagcaaaga acagtgaaat ggtggaagaa ggacgttcgc gccatcttgc       420
     cacacaaaga aagtgaacaa agaaaaacag aagtgaccgt cgaaaagaga tgagcgtgcg       480
     tcgccatctt gttggacgaa aaagacgtgt gtgtgttcgt cagtgagaaa tgggcgtgcg       540
     ccgccatctt gctcaacgaa aagtgaaagc ctcggcggat gtggtcccat tggccgcccc       600
     gagcagaagt gtgcgtggaa ggtggtccct ttggccaccc gagcagaaag tcagtgcttt       660
     tgaagaagta atggagtgcc gcgcagctct gtgagcagag tagtgcgcag aaaagccctg       720
     acaaagtggt cccattggcc acatcaggcg gaagttccga cgggtggacc cgatgtccac       780
     gccgtgaaaa ggagctggaa gagtggtccc attggccaca cggtgcagtg ttgtgcgttg       840
     ctctgtgagc agggcgagtg gtcccattgg ccacgaagaa gccctgcgtc tgtgtggtga       900
     gccaacagag cagcgtgctg aagaaaccgg cggtagtggt cccatcggcc acgccgtacc       960
     cgaagaaaag tgagcgcgag gcgcataaaa cccaaactag aaagtgacaa agagtgacct      1020
     gctgcaagag cagcgaaaag tgcaagctgt gctgtgacgc agactgcaaa accccgagca      1080
     gaaaagtgct ggtgagccgg cagctcgaag aagtgatcca gtgtgcccag ctggaaagaa      1140
     gaagaagaac cagtgcaaca ggacgctgcc gctgtcgtgt cgttctgagc gcggccacag      1200
     tggagcaaca gattcctgcg cgaatccaga gcaacagatc ccgccgagat ggagctgaag      1260
     tcagcgcgtt ccttgaccat caagcgaaac ttcgtcaagg gtaagatttc gcgggtcgtg      1320
     gacaggttga aggcgttcga ggagaaccac cagctgcctt cgtttgccca gatccaagtc      1380
     ttcgtgtgga acgtcgagaa gtactacggc gagttcaaca aggtttgcga cgagtttaag      1440
     gtaagcgacg ctgacgctgg tgaacgcttc aaccacgaca tcgagtgggc aagagtagtg      1500
     agtctgatcc aggaagctaa catgcggatt gtggccctga acaacgcact gctgtctcag      1560
     cccgtgcatg ccgctgagaa acaaccggtc ttgaaggaag aggccaaccg aactccgctt      1620
     cccacgaccg aggctcgtgg cgaagtcgat tcttccggag ccggcgatct tccggatgct      1680
     gcgaacgccg agagatgcca tgcagatgat cgagagccgg gtgcacctga caccaaggta      1740
     ggtgcccatt ttgaactcta ttcgagtccg cccattgcgg acagcgagcg taacgagccg      1800
     atgtgcacgt tgtgcaacgg ttgccgctcg gacatcgact gcttcccggt ccgtggagat      1860
     ccggtcgagc agtgtcaacc cctcgaagag tcgaacccca acctgagcag ccagaagagg      1920
     ttgccaggag agtctcacga gcctgagact caacccgcag tgcacgcgat actgccaccc      1980
     gaggaacctg aagtggttcc gcacgagtcc tcgtcagatg accgaggtag tgccgagaca      2040
     aaacccggcc tgtgcagccc ccagcggttg ccaggagatt ctcgcgaacc cgagaatcga      2100
     caagaagagt cgtccaagga accggcagtg gttccgcatg agtcctcggc agcagaacga      2160
     ggtagtgccg tgtcggacga cccagaagct gtccccatgc cggagcaagc tcagcacgtc      2220
     gacgttgtgc cagacgttga cacgtgccaa gcagtggagg gagtttcact gctgccagcc      2280
     gtacctgacg atgagaacaa cgaggaaggt gcacaatgcg gatgcaccga accagcaaga      2340
     tctagcgttc aagtagtttg gacgacgaac cagaacgcga ggaaggccaa caagaacatc      2400
     gaaatcgacc agcgaacgtg tacgagccac gagagtgtga cgtacctgta cagccaacgg      2460
     accgagctgt acgaaagatg ctgcggtgac agcatcgcac ggtcaggagc cgacggtgca      2520
     gacgaacccg gaagagctgt ggagaaattg cacgatcctg caatcttcag cagcaccacg      2580
     aagagacccc gatttgtctg ggacccaggc gtggagttga acgcagcgtt tgctccatac      2640
     aaccgaggaa gaccaccaac agatgccaac aggtgcaagg agttgcttgc tcgtctggtt      2700
     gcaatgaacc tggaaccttc agcgatcaac ggaatctcgc agtacgaacg actgagaccg      2760
     gcacagcgtg ttggtgaagc tgaagccgtg acgcctcaac ccggggggag aa              2812
//
ID   BEL-48_CQ-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_CQ_;
KW   BEL-48_CQ-I; BEL-48_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-361
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 250-250 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 361 BP; 104 A; 90 C; 98 G; 69 T; 0 other;
     tgttcggcac ggcgccgaat gttttgacct gatttgcgca actgcctccc agtgtgcgtg        60
     agtccagccc tgcgtcgctg tcagcgacgt tgctgccaac gtgacagcgc gaaacgacgc       120
     aacgagcgaa aacggcgcga accgaagcgc gcgcaaacga aaagaaggag agagacagag       180
     tggaaaattt tcactccgtt tcgagacgcg aacgagacac gtcgtgcagt gtaaataaaa       240
     atcggaaatt tgaaagtttt gtgaagtaaa aggtgtaaaa gcaagcccca gtgtttttat       300
     cactccagaa tcccgaatac agtccacccg cagaatccag ttgggggatt tggccccaac       360
     a                                                                       361
//
ID   BEL-48_DTa-I repbase;    DNA;    INV; 7185 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   05-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7185
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5703-5703 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(938..6202,6148..6696,6700..7113)
FT                 /product="BEL-48_DTa-I_1p"
FT                 /translation="MPDGAENRLPKEGKKDEGTGPSGNLRSNVKGNRDTAM
FT                 MEFIATSDRLSRYEAQIFTPSAIEPTSFTLKVRLDQIQSLWERVEREFDLC
FT                 SRLVIQEGGGSCPSLQSKYDNCYSVYERCASKLSEQIAFISASTALSRPNP
FT                 GPEFSSKGCNLPPVDTEVFDGDYLRWPTFRDLFTAIYVDNSRLTKVEKLFH
FT                 LNAKTSGEAKAIVAKSPLTNDGFESAWAALIERFENKRLLVNSQLKILFNL
FT                 STISVESGTALKEIQSTIQGCLLALEHSKVSTSNWDCLLVFLCSSKLPQVT
FT                 LSLWEQSLTKKSEIPTWKEMNTFLEERYRTLEAIEDVRVNSGASSHSKEHK
FT                 TGAAPKRVNSFEIQVAPKVRSCDLCVKEAHPVRICPRFLQMSQPERETYIK
FT                 QKRLCLNCFARGHHLRECKSRHNCFICKGRHNTLLHKDIPRNHNSSAQDQT
FT                 TVQESTPIQSTSVHFVSNQQGVLLGTAIVHVCHLGENYSARALIDSGSEGT
FT                 FISARLANRIKIPFQNVRTKVTGLNQASSGVSQKLCHFQIGNPAKPLLKVD
FT                 TTALVLPQLAGNLPTTTIDRSILRELPNIQLADPLFFQPSQIDLLIGADIL
FT                 PSVLLSGSKPNLCGSLLGQETIFGWILTGPISLAREKSVASFTTKVSIESE
FT                 PTMETLLTKFWEVEDLPGKVVKESDSFCEQNFVQTTSRSAEGKYVVSLPFK
FT                 NAESVSLGHSRSFALAQFLRNENRLKKDAVLKNIYDSVIKEYLDLGHMKQV
FT                 SSDTDSANFYLPHHAVFKPESATTKVRVVFNASSPSSNGNSLNDILYPGPI
FT                 LQSDLTLQILKWRIFQFVFNADITKMYRQIGVTTSHTPFQRILFRNDQGDI
FT                 ADYELQTVTFGVNCAPFLALRTLQQLSNDVKAQYPRASDIISNYMYVDDVL
FT                 AGAHTKSEAIVAISELRSALSSAGFPLRKWTSNERDLLEALPKDHLLSVDF
FT                 LEIEEVSTTKTLGVRWNATADEFYFVASQVELKSKFSKREILSQIARLFDP
FT                 AGWLSPFIVQAKILMQDIWLAKIGWDDFLPEDLLQRWHDFLRSHDFLPKVR
FT                 VPRWIQFQPGANVQVHGFCDASQKAFGAAIYVRVQRGGIVSSELLTAKTKV
FT                 APVKTVSLPRLELCGAVLLAELWAAVLPQIPLAVTDTYFWTDSTIVLAWLN
FT                 KPSCQWTTFVANRVTKITLATQGSKWSHVRSEHNPADLASRGVSSEELADS
FT                 DLWWHGPSWLVRPQQEWPKPCDAVAETDLEKKAVRCNFACPIWDILDRFSD
FT                 FNRMLRVMAFVQRFINRCRRFRSTYPPDLSADEISSVQRILIIQTQQNEYK
FT                 EEYKLLQSKKKLPTSSCILNLNPFLDSDGVIRSCGRLTASDSLSYDESHPI
FT                 ILPYYCRMAELLVRFTHRISLHGGNQLMLRLIRAKFWIPKLRNLIKKVTTT
FT                 CKVCLIHRKKVQSQLMGRLPKPRSTFSRPFTHTGLDFAGPFDVKSYTGRAC
FT                 RITKGYVCVLVCFSTKAIHLEATSDLTTEKFLGAFSRFVSRRGCPLHLYSD
FT                 NGKTFVGAENLLNKDFLETLKAKVTSTFNHQSLSWHFNPPGAPHMGGLWEA
FT                 GVKSFKTHFYKTTGHFKYTFEELSTLLCRIEACLNSRPISAMSDDPSDLLA
FT                 LTPGHFLTGGPLLAVAEPPVTGEASSILNRWQRVKALSQLFSRRWKTEYLQ
FT                 ELHKRSKWQTPTKNLTEGDLVVVKEDNTPSCDWKLGRIEKVHPGSDNNVRV
FT                 VDIRSTRGILLKRPISKVVFLPVDNNVQSLCVQCQGGVPPRRQQRAESMCS
FT                 MSITFFASANPILLFYFFFFSLQYFFFLFFFPLRHRTMPSHRSAQSTESRC
FT                 SRGTKSFRCRVCTGIHPLRTCSRFLRLNAERRMRAVLINKYCPNCLAHQHS
FT                 EGACRSKCRCQVCGSDHHTLLHLYRRKERRQRSPTPPQAAEMPRLSTVLAH
FT                 TSTAILPTQIYGSTAQRNLMSESWCCSGVSRIDNSLAEAMNLPILGVGSER
FT                 VCKASLIPINAETPRMEVVFSVEDQLRMRTPARELPDTVRTQFANIVLADP
FT                 NFYRPTGISVVLGADVYPNLIQPGLLPSPSGRLVAQNTVLGWMLSGTCAQ"
XX
SQ   Sequence 7185 BP; 1954 A; 1710 C; 1522 G; 1999 T; 0 other;
     tttttggtcc ttcgagccgg gttttatata tcagccagct aagtacatat acacgcattt        60
     tttgtgccat ccgtctcaaa tcctcataca tacatatatc ctatgtgcat gcgtagttca       120
     tttctctttt tgtgtgaaag tgttttgcat tcttttgaac gtacatttcc aactacattt       180
     tgaacatacg ttcccaacat acatttgaac atacgtttcc aacatacatt tgaacatacg       240
     ttaccaacat acatttgaac atacgttcac aacatacata tgaacatacg tttccaacat       300
     acatccgaac atacatacat atacacacgt acagagccat ccgtcttata tgtgcatatc       360
     attgcacata ttttcctgta atataaaagt gatataaaca ttgcagcaca tatacatata       420
     ccccgtgtgc gtgcatgatc ccagtttttt atttaggtga aagtgctaag tgaataaatt       480
     acacatttta acatacatgc tcatatatct acgtttcaat tccaaacgtt ccttagttcc       540
     acagggcatc cgttaaggta gcgctgaacc ggtaatacca tattcacacc tttcaactaa       600
     ttaattagca acttaaaagg aaaacaacag ccaaaaggaa ttaaaatata ctatcctgtt       660
     atatcgattg tccatatcca acctctacat atattttctt acatttgggt tttttagcaa       720
     gttgccagtg agaacaacgc cttgttggcc gtgtacgcct ttacagtgga attaattgtt       780
     ttcacttttt tttaaattgt cttcaaatag cgcgctcaca cttccactta ttgggttttt       840
     ttttacttgc ataaattcca gcctccactt ctatctatcg tgattaatat caaaactaat       900
     ttttttcttt tggtctaaac aaaggcaaac agcaaacatg ccagacgggg ccgaaaatcg       960
     attacccaaa gaaggaaaga aagatgaagg tacagggcct tctggcaatc taagatccaa      1020
     tgtaaagggc aatcgagaca cagcaatgat ggaatttatt gccacaagcg atcgattaag      1080
     cagatatgag gcacaaattt tcacaccgtc agctatcgaa ccaacctcgt ttactttaaa      1140
     ggtccgtctc gaccaaattc aatcactatg ggaaagagta gagagggaat ttgatttgtg      1200
     ttccaggttg gtcatccaag aaggcggcgg cagctgtccg tcgttgcaaa gtaaatacga      1260
     caattgctac tcagtttacg agagatgtgc atcaaaatta agtgagcaaa tcgctttcat      1320
     ttcggcttct acagcgttgt cacggccgaa tcctgggcct gagtttagtt ctaaaggctg      1380
     taatcttccg ccagttgata cagaggtgtt tgacggtgat tatttgcgtt ggccaacatt      1440
     ccgtgaccta ttcacagcca tttacgtcga caactccagg ttgactaagg tagaaaaatt      1500
     atttcatttg aatgctaaaa ccagtggcga agccaaagcc attgttgcca aatccccact      1560
     taccaatgat ggttttgaat ccgcatgggc ggcgcttata gaacgttttg agaataagcg      1620
     acttctcgtc aacagccaat taaaaatcct ttttaatctg tcaacgataa gcgttgaatc      1680
     agggacagct ttaaaggaaa tccaaagcac cattcaaggg tgtttgctgg cgcttgaaca      1740
     ctctaaagtt tccacgtcta attgggactg tcttttggtt tttctttgct catccaagct      1800
     gccacaggtc actctttcac tatgggagca gtctttaacc aaaaaatccg agattcccac      1860
     ttggaaagag atgaacactt ttctggagga aaggtatcgc accttagagg cgattgagga      1920
     tgtcagagtg aattcgggcg cttcttctca ttccaaggaa cacaaaaccg gtgccgcacc      1980
     caaaagagtg aactccttcg agatccaggt tgctccaaaa gtacgcagct gtgatctctg      2040
     cgtcaaagag gcacatccag ttcgaatttg tcctcgcttt ctccagatgt ctcaaccaga      2100
     gcgagaaact tatattaaac aaaagcgttt gtgtttaaat tgcttcgcta gaggacatca      2160
     tctgcgtgag tgcaaaagta ggcacaactg ttttatctgc aagggacgcc acaatacgct      2220
     cctacataaa gacattccta gaaaccataa tagctccgca caggatcaaa caactgtgca      2280
     agaatctacc cctatacagt ccacttctgt ccattttgtt tccaatcagc aaggagtcct      2340
     tttagggaca gccatcgtcc atgtatgcca tttaggagaa aactactcag cccgagccct      2400
     gatcgactca ggttcggaag gcacctttat ttcggcaaga cttgctaatc gaattaaaat      2460
     tccatttcaa aacgtgagga ctaaagtcac agggcttaac caagccagtt ctggagtctc      2520
     tcaaaagctg tgccatttcc agattggcaa ccctgccaaa ccattgctta aagttgatac      2580
     tactgcacta gtcttgccac agttggctgg aaatcttccg acgaccacaa ttgatcgcag      2640
     tattctcaga gagctaccaa atattcagtt agctgatcct ctatttttcc agccttcgca      2700
     aattgatttg ttaataggtg cggatattct gccgtcagta cttctctctg ggtcaaaacc      2760
     taacctgtgt ggctcgctac tgggccaaga aacaattttc gggtggattt tgacaggccc      2820
     aatttcttta gccagagaaa aaagtgttgc ttccttcaca acaaaggtgt ccatagagtc      2880
     tgagcccact atggagacat tactcacaaa gttttgggag gtggaggatc tcccaggtaa      2940
     agttgtgaaa gaatccgata gtttttgtga acaaaatttc gtccagacga cttccagatc      3000
     agcagagggg aaatatgtag tatccctacc ctttaaaaat gcggaaagtg tgagtttggg      3060
     gcactcaagg tctttcgccc tcgcacagtt tctacggaac gaaaaccgtt taaaaaaaga      3120
     tgctgtttta aaaaatatct atgattcagt catcaaagag tacttggatc ttggccatat      3180
     gaagcaggtc tcctcagaca cggacagtgc aaatttttat ttaccccacc acgcggtttt      3240
     taagcccgag agtgccacta caaaggtacg tgtagttttc aatgcttcga gtccgtcatc      3300
     aaatgggaac agtttaaacg acattcttta tcccggtcca atactacaat ctgatctgac      3360
     ccttcaaatc cttaagtggc gtatatttca gttcgttttt aatgccgata ttacaaaaat      3420
     gtaccgccaa atcggagtaa ccacctcaca cactcctttt caaagaatcc tctttcgaaa      3480
     tgatcaaggg gatatcgctg attacgaact tcagacggtc acttttggag taaactgtgc      3540
     tccttttttg gccttacgca ccctgcaaca gctatccaat gacgtcaaag cacagtatcc      3600
     ccgtgcttct gacattattt cgaattatat gtatgtcgat gatgtgcttg caggagcaca      3660
     tacaaagtcc gaagccattg tagctatttc tgagttgcga tcagcgctca gttcagctgg      3720
     tttcccccta cgtaaatgga catccaatga gagagacctt ctcgaggctc tccccaaaga      3780
     ccatctgctc tcggtcgact tcctcgagat tgaggaagtc agcactacaa agacgctggg      3840
     agtgcgatgg aatgcaactg cagatgagtt ttatttcgtt gcgtctcaag tagagttgaa      3900
     atcgaagttt tcaaaacgag aaatcctgtc ccagattgca agacttttcg acccagccgg      3960
     ctggctatcc ccatttatag ttcaagcaaa aatattgatg caggacattt ggctagcgaa      4020
     aattggttgg gacgattttc ttcccgaaga tttacttcaa aggtggcacg atttccttcg      4080
     cagccacgac ttcttgccga aagtgcgcgt tccgcgctgg atacaatttc aacccggcgc      4140
     aaacgtccaa gttcacgggt tttgcgatgc ttcccaaaag gcttttgggg cagcaatata      4200
     tgttcgagtt caacgcggcg gtatcgtttc ctctgagctt ctgacagcta aaactaaggt      4260
     tgcgccagtg aaaacagtgt ctctgcctcg ccttgagctt tgtggagctg ttcttctggc      4320
     agaactttgg gccgcagtcc ttcctcaaat cccacttgcc gttacggata cctacttttg      4380
     gactgattcc actattgttt tggcctggct gaataagcca tcgtgccaat ggacaacatt      4440
     tgtggctaat cgagtgacca agatcacatt agctacgcaa ggaagcaaat ggtctcatgt      4500
     gcgttcagag cacaatccag cagacctagc tagtcgagga gtatcctctg aagaattggc      4560
     tgacagtgac ttatggtggc atggaccctc atggttagtt cgcccacagc aggaatggcc      4620
     taagccctgt gacgcagttg ctgaaactga tcttgagaaa aaggcagtgc gttgcaactt      4680
     tgcatgtcca atatgggaca ttctggatcg attctctgat ttcaaccgca tgttaagggt      4740
     tatggcgttc gtgcagcgtt ttataaaccg atgccgacgt tttcgcagca cctatccgcc      4800
     agatttaagc gcagatgaaa tatccagtgt ccaacgaata ctaataattc agacccaaca      4860
     aaatgagtat aaagaggaat acaaacttct tcaatccaag aaaaaacttc ctacctcaag      4920
     ttgtatcctc aacctaaatc cgttccttga ttccgacggc gtcatccgat catgtggtcg      4980
     tttgacggca tctgactcgc tgtcttacga tgagagtcat ccgattattt tgccatacta      5040
     ctgccgaatg gctgagcttt tggtccgttt tacacaccgt atttctcttc acggtggtaa      5100
     ccaactcatg ttgcgtctca ttcgagcgaa gttttggatt ccgaaactta gaaatcttat      5160
     taagaaggtg acgaccacat gcaaagtttg ccttattcat cgaaagaagg tgcagtcaca      5220
     attgatggga aggctgccaa aacccaggag cacattctca cggcctttta cgcacactgg      5280
     ccttgatttc gcggggcctt tcgacgtgaa gagttacact ggccgagcct gccgcatcac      5340
     taaaggatat gtttgtgtcc tcgtgtgttt ctctaccaaa gcgatacatt tggaagctac      5400
     ttcagacctg acaacggaga aatttcttgg tgcgttctct agattcgtgt caaggcgagg      5460
     ctgccctctt cacctttact ccgataacgg aaagaccttt gtcggagctg aaaatttatt      5520
     gaacaaagac ttccttgaga ccctgaaggc aaaggtcact tcgacgttta accatcaaag      5580
     cctatcctgg catttcaacc cccccggtgc gcctcatatg ggaggtttgt gggaagcggg      5640
     agttaagagt tttaaaaccc atttttacaa gacgacggga cattttaaat acacatttga      5700
     agagttatcc actctcttgt gtcgcatcga agcgtgtctc aattcgagac ctatatcggc      5760
     aatgtctgat gatccttctg acctccttgc gctcactcct gggcatttcc taacaggtgg      5820
     accattacta gcggttgccg aaccacctgt gaccggcgaa gccagttcta ttctgaacag      5880
     atggcagcga gttaaggctc tgagccaact gttttcgagg agatggaaaa cagaatatct      5940
     ccaagagctc cacaaaagga gcaaatggca gactccaaca aaaaacttga cagaaggcga      6000
     cttggtcgtt gtcaaggagg acaacacgcc atcatgtgat tggaaacttg gtcgtattga      6060
     gaaggtccat cctggctctg ataacaacgt tcgcgtagtg gatattcgct ctactcgcgg      6120
     aatactgctt aaaagaccta ttagtaaggt ggtgttcctc cccgtagaca acaacgtgca      6180
     gagtctatgt gttcaatgtc aataactttt ttcgcatccg ctaatccaat ccttttattt      6240
     tatttttttt tcttcagtct tcagtacttt tttttcctct ttttttttcc tttacgtcat      6300
     cggacaatgc cgtctcaccg aagcgcccag tcaacggaaa gcagatgttc tcgaggaact      6360
     aaatcgttcc gatgccgagt ctgcacagga atacatcctc tacggacttg ctctcgtttc      6420
     ctacggttga atgcggagcg tcgtatgcgg gcagtcttaa tcaataaata ctgtcccaat      6480
     tgcctggcac atcagcattc agagggggct tgtcgaagca agtgccgttg ccaagtgtgt      6540
     ggcagtgatc atcacaccct gctccacctt tatcgcagga aggagcgacg tcaacgttcc      6600
     ccaactccgc cacaagctgc tgagatgcct cgcctttcaa ccgtcctcgc gcacacctcg      6660
     acagctatcc tgcccacgca aatttacggt tcgacgtagg ctcaaagaaa tttgatgtcc      6720
     gagtcatggt gctgttcggg cgtaagccga attgacaatt cgctggccga agccatgaat      6780
     ctcccaatcc tgggagttgg aagcgagcgc gtctgcaagg cttccctgat ccctatcaat      6840
     gcagagacac ctaggatgga ggtggttttc agcgtggaag accagctgcg gatgcgtact      6900
     cctgcgaggg aactgcccga cacagtccgg acacaatttg ccaacatcgt cctggcagat      6960
     cccaattttt acaggccaac aggaatctcc gtggttctgg gtgccgacgt ctaccctaat      7020
     ctgatccagc caggactatt gccgagtccg agtgggcgtc tggtggcgca gaacactgtg      7080
     ctaggatgga tgctatccgg tacctgtgca caataatgca tacggtgctc ctagtcattg      7140
     aaggcttcct tttgcaattt gaagtatatt gcaaggcggg cggaa                      7185
//
ID   BEL-48_DTa-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   05-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-48_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-224
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5628-5628 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 224 BP; 70 A; 46 C; 29 G; 79 T; 0 other;
     tgtctacgcc tggtctagct tattttttag tatttttttc tcttggtaaa tttaaggttt        60
     ttctataatg gagatctggt atcatcaagg ccatgacttt actctttgct actattctgt       120
     aaaaaccaca cacacaaaag ttgaactcac gattaacaca ataaaacctg gaaatatatt       180
     cggaaaacac caaacaccgt cttgtcttca tttctacata taca                        224
//
ID   BEL-49_AA-I repbase;    DNA;    INV; 6150 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_AA_;
KW   BEL-49_AA-LTR; BEL-49_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6150
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions 1365060 1358911.
XX
CC   Positions [5199-5735] - Integrase core
CC   'CTACA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..4751
FT                 /product="BEL-49_AA-I_1p"
FT                 /translation="MPEENETSGSGDRNCTLCEDHDSVDDMVQCDNCDLWT
FT                 HYSCAGVTEAVKESQWVCPKCTNTLQVPKNTKKVTSKKTGKKGSNKSDTGS
FT                 DSGKVDAIVASFEESLAQLQQERSAKTKHLDEEKVLHEKRLQMEREILERK
FT                 RLQKRQMMEKELAQEQEILEQQLRDEQEFLQRRQDLRNRFQQIKLDLSQRY
FT                 EEPDDSDDDEDGANGAEKAKSWLQTTKEDPRGAYPKKGGPHETGFQSSQVS
FT                 QLAGTRKQSQYLEFPGPTMQNEPGLKHAGSFVERSLPNQFQGITMPNEPGS
FT                 KQAASFVERSQPEQFPGPTMLNEPWLKQAPNFIEHPLPNQLAADNASREWR
FT                 ELLQRSDLTAEEEDVIRNIMSRRRPGGNVQGSFVNRGPTPEQLAARQAVSK
FT                 HLPVFRGEPEVWPLFISCYEYTTAACGFTNTDNLKRLQDSLQGLAKEAVQS
FT                 RLLIPDSVPEVIEDLRKLFGNPEKLLKTLVTKVRQAQAPRLDRLETFLYFG
FT                 ITVKQLCDHLEAAGLHDHLSNPMLVQELVNKLPPEYKLDWVRFKRGKPGTP
FT                 LRNFTDFINEIVSEVSEVADFTGAEQGVTGQPWKNKPKKKEFVNTHNTNSS
FT                 RSGGPYSEMQPKPRKPCVVCKRNDHKVRYCDDFSKLSIVERLKIVDKFKLC
FT                 QLCLNDHGKAQCTFKGRCNVPSCNKLHHSLLHRAVESIQLSVAQSNTHFQS
FT                 FRSVIFRIVPITLYCRGRAVKTSAFLDEGASTTLVEDSIADKLNADGIPEP
FT                 LEVIWTANMKRYEEGSRRIDLQISGRESSKRYELKEARTVNELVLPKQEVN
FT                 FEEMVSRYRHLEGIPITDYGVEVPRILIGLDNLHLFAPLESKLGDIGEPIA
FT                 VRSILGWCIYGPNQQRTSPKAYVHYHSIEPITNQHLHDLLRAQYTLEDPYE
FT                 QTEAIPETEEIVRARTILEKTTKRIGDRFETGLIWKHDNVTFPDSYPMALK
FT                 RMTALERRLAKEPRLQTEVHQQINAYVQKGCAHLATKEELNGVCSSNIWYL
FT                 PLSVVLNPKKPNKVRLVWDAAATVGGVSLNSKLLKGPDLLTSLPSVISKFR
FT                 ERPVAIGGDIREMYHQLRIRDSDKQAQRFLFRFNSSEPPGIYIMDVATFGA
FT                 TCSPCSAQFIKNRNALEHSEQYPEAALAIVDRTYVDDYFDSLDSEEEALRR
FT                 AKEVKFINAKAGFEVRNWSSNSSLVLCELGEEKSSGLVHFHQDKATENERV
FT                 LGIIWNPRLDTLSFAVPSGAEISLDHSGKTTKRIVLSSVMSLFDPLGLLAP
FT                 FTTQGKMLIQDLWRSGCDWDQVIDDDSYKKWRSWVSVLSKIADLEIPRSYF
FT                 GMVQSKDFGHIQLHIFTDAGENAFGCAGYLRIVVDGVVKCSLAMARSKVAP
FT                 LKQLTIPRLELQAAVLGARMSHQIKQNLSLQLHQTFFWTDSRTVMSWIASN
FT                 QKRYKQFVSFRIGEILSLTKLSEWRWIPSKLNIADCLTKWKGEWDLDPEWF
FT                 SGPSFLYQIPEMWPRQQLPPMNTRIELRAVHLFHDVILPDKLIDAAMFSKW
FT                 NVLVRTLASVLRFVSNCRRKLRGEPIETLKPTVNQRSNIVVEMRAARTPLK
FT                 QRISTS"
FT   CDS           5169..6149
FT                 /product="BEL-49_AA-I_2p"
FT                 /translation="MASIPVQRLTPYKRPFTFVGIDYLGPVEVSVGRRAEK
FT                 RWIVLFTCLVVRAVHLEVAYNLTAQSCTMAIRRFICRRGPAAEYFSDNGTN
FT                 LKAASKEFVGRLQAIGSECAEEFTTARTKWHFNPPAAPHMGGIWERMVRTV
FT                 KNVMAVLNDGRRLTDELLLTTLAETEDMVNSRPLVYAPQGSPQESLSPNHF
FT                 LRGIAANEPHEVLPPTNPALALRDTYQRSVELSNNLWERWLKEYTPSLNHR
FT                 RKWFTESSPLRKGDLVYVVDGNRRKAWIRGVVEEPIVSGDGRIRQAVIRTN
FT                 YGLVRRATANLAVLEIEGSNAAPDSNSGTGLRAGD"
XX
SQ   Sequence 6150 BP; 1828 A; 1402 C; 1545 G; 1375 T; 0 other;
     ttcttgaaga acaactctcg gataacctcg aaatgccgga ggagaacgaa acatcgggaa        60
     gcggcgatcg caactgtacg ctttgcgagg atcacgatag cgtagatgac atggtccaat       120
     gtgacaactg cgacctctgg actcactata gttgtgcggg cgtcaccgaa gccgtgaagg       180
     agtcacagtg ggtgtgcccg aagtgtacga acactctgca ggtgccgaag aacaccaaga       240
     aggttacctc caagaagact ggtaagaaag gtagcaataa gagcgatacc ggatccgatt       300
     ccggaaaagt agatgctatt gtagctagtt ttgaggagtc actggcgcag ttgcagcaag       360
     aaagaagtgc gaaaacaaaa catctcgacg aggaaaaggt tctgcatgaa aagcgtttgc       420
     agatggagcg ggaaattctg gagcgaaagc gcttgcagaa gaggcaaatg atggagaaag       480
     agctggcaca ggaacaagaa atcctggaac aacagctacg agatgagcaa gaatttcttc       540
     aacgccgcca ggatcttcgc aaccggtttc aacaaatcaa gttggacctc tctcagcgtt       600
     acgaggaacc cgacgactca gatgatgatg aagacggagc gaatggagcg gaaaaagcga       660
     aaagttggtt gcaaacaacc aaagaagatc cccgaggagc atatccaaag aaaggcggac       720
     cacatgaaac aggtttccaa agctcacaag tgagccagtt agctggtacc aggaagcaaa       780
     gccaatacct ggaattccca ggacccacga tgcagaacga gccggggttg aaacatgctg       840
     gcagcttcgt cgaacgttcg ctgccgaacc aatttcaagg catcacgatg ccaaatgagc       900
     cggggtcgaa acaagctgca agtttcgtcg agcgttcgca gccggaacaa tttccaggac       960
     ccacgatgct aaacgagccg tggttgaagc aagctcccaa cttcattgaa catccactgc      1020
     caaatcaatt ggcagcagat aatgcatcac gggaatggcg tgaactactg caacgatcgg      1080
     acctgaccgc agaagaagaa gacgtcatca gaaacattat gagccgcaga agaccaggag      1140
     gtaatgttca aggcagcttt gtaaatcgag gacctacgcc ggaacagttg gcggctagac      1200
     aagctgtatc caagcatcta cctgtatttc gtggggaacc tgaggtttgg ccgcttttca      1260
     taagctgtta cgagtatacc acggcagcgt gcggctttac gaacacggac aatttgaaaa      1320
     gactacaaga cagtctacag ggacttgcga aggaagcagt gcagagtcgc ctcctgatac      1380
     cagattcagt tccagaagtg atagaggatc tgcgaaaact cttcggtaac ccagaaaagt      1440
     tactgaaaac tctggtaacg aaagtgcgac aggcacaagc tccacgattg gatcgacttg      1500
     agacgtttct atacttcgga atcacagtta aacaactgtg tgaccatctc gaggcagccg      1560
     gtttgcacga tcatctgagt aatccaatgc tcgtgcagga gcttgttaac aaattaccac      1620
     cagaatataa attagactgg gtccggttca aacgcggtaa gccaggaaca ccgttgagga      1680
     actttaccga cttcatcaac gagatagtgt cggaggtgtc ggaggtagcc gactttacag      1740
     gagcggaaca aggagtgact ggacaaccgt ggaagaataa gccgaagaag aaggagttcg      1800
     tcaatacgca caatactaat tcgagccggt ctggtggacc gtattcggaa atgcaaccga      1860
     aaccgagaaa gccgtgcgtc gtttgtaagc gaaacgacca taaggtgcga tattgtgatg      1920
     acttttccaa actaagcatc gttgaacgct tgaaaatcgt cgacaaattc aaactttgcc      1980
     agttgtgtct aaatgaccat ggtaaagcgc aatgcacatt caaaggccgt tgtaatgtgc      2040
     caagttgtaa caaactccac cattctctac tgcatcgcgc ggtagaaagc atccaacttt      2100
     ctgtagctca aagcaataca catttccagt cgtttcggtc ggtgattttt cgcatcgtac      2160
     ctattacgct gtactgcaga ggtcgtgctg taaaaacatc agctttcctc gacgaaggcg      2220
     cgtcaacaac actggtcgaa gactcgattg ctgataagct gaatgcggac ggtattccag      2280
     agccgttgga agtcatttgg acagcaaata tgaagcggta tgaagaaggg tcacggagaa      2340
     tcgatcttca aatctcagga cgcgaatctt cgaaacggta cgagctgaag gaggcacgta      2400
     ctgtaaatga attagtgctg ccaaaacagg aagtaaactt cgaggagatg gtcagccgat      2460
     atcgtcatct agagggaata ccaatcaccg attacggtgt ggaagttcct cgcatattaa      2520
     tcggcttaga taatctacat ctcttcgccc ctctggaatc caagttggga gatatcggcg      2580
     aacctatagc agttcgttct atactggggt ggtgcattta cggcccaaat caacagcgga      2640
     cttcaccgaa agcgtacgtg cactaccact cgatagagcc aataactaat cagcacctgc      2700
     acgatctgct tagggcgcag tacaccctag aggacccgta tgagcaaacc gaggcaatac      2760
     cagaaaccga agaaatcgtg cgagccagaa ctattttaga aaaaacgact aaacgcattg      2820
     gagaccggtt tgaaacgggg ttgatatgga aacacgacaa cgtaactttc ccagacagct      2880
     acccgatggc gttgaaacgg atgacggcac ttgaacgacg actcgccaag gaacctcgac      2940
     tccaaactga agttcatcaa cagatcaatg catacgttca aaaggggtgc gcacatcttg      3000
     caactaaaga ggaattgaat ggtgtgtgca gctctaacat ctggtatctt ccgctaagtg      3060
     tggttcttaa tccaaaaaag ccaaataaag tgcgcctggt atgggatgcc gcagcgactg      3120
     tcggaggtgt ttctctaaat tctaaactgt tgaaaggccc agacctgctc acgtctctac      3180
     catcggttat cagcaagttt cgcgaacgac cggtagcaat tggtggcgat atacgcgaaa      3240
     tgtaccacca gttgcgcatc agggactcag ataagcaagc acagcgcttc ttatttcggt      3300
     tcaattcatc agaaccacct ggtatttata tcatggacgt agctactttt ggggctacat      3360
     gctccccatg ttcggcacaa tttattaaaa accgaaacgc tcttgaacac tcggaacagt      3420
     accctgaagc agcattggca atcgtggatc ggacgtatgt ggacgactat tttgatagtc      3480
     ttgactccga agaagaggcc ctacgccgag ctaaggaggt gaaattcatc aacgccaaag      3540
     cggggtttga agtcagaaac tggtcttcaa attcgtcgtt agtactttgc gaactgggcg      3600
     aagaaaaatc aagcggattg gtacattttc atcaagataa agcaaccgag aacgaaagag      3660
     tattgggcat tatctggaat ccacgcttgg acactctgtc attcgctgtc ccatctggag      3720
     cggaaatttc gttggatcac tctggcaaga ctacaaaaag gatcgttctt agttcggtta      3780
     tgtccctatt cgacccgtta ggtctactag cgccatttac cacccaggga aaaatgctaa      3840
     tccaagatct ttggaggtcc ggatgtgact gggatcaagt cattgacgac gattcgtata      3900
     aaaagtggag atcatgggta agcgttttat ctaaaatcgc cgacttggaa atccctcgca      3960
     gttactttgg tatggtgcag tcaaaggact tcggccacat ccaactgcac atatttaccg      4020
     atgctggaga aaatgccttc gggtgtgctg gatatctacg gattgttgtc gatggagtag      4080
     ttaagtgctc tttggcaatg gcacgatcga aagtagctcc tctgaaacaa cttacgatcc      4140
     cccgcctgga actacaagcg gctgtattag gtgcaaggat gtcgcaccaa atcaagcaaa      4200
     atttgtcgct tcaactacat caaacctttt tctggactga ttcccgaaca gttatgtcct      4260
     ggatagcttc gaatcagaag cgttataaac aattcgttag ctttaggatt ggagaaatct      4320
     taagtctgac gaagttgtcg gagtggagat ggataccttc gaagctgaac atagcggatt      4380
     gtcttacgaa atggaagggt gaatgggatc tggatccgga gtggtttagt ggaccgagct      4440
     tcctgtatca aattccagaa atgtggccac gtcagcaact gcctccgatg aatacaagga      4500
     ttgaattacg agctgtgcac ttattccacg acgtaatatt gccggataag ttgatcgatg      4560
     ctgccatgtt ttccaagtgg aatgttctcg tcagaacgtt agcaagcgtg ctacgttttg      4620
     tttcaaattg tcggcgaaaa ttgcgaggag aacccatcga aacactcaaa ccgacggtga      4680
     accaaagatc aaatatagta gtcgagatgc gagcggctcg aacaccattg aaacagcgaa      4740
     tatcaacgag ctgaaacttt actgttcaga tcagcgcagt acgacgcttt tggtgatgaa      4800
     ataaaaacgc ttcttaaaaa tcaagacctt gaaccatcca agtggataaa cctggaaaaa      4860
     ggcagctcac tttacaagct cacaccactc ttagacagcg aaaaggtatt aagaatggaa      4920
     ggacgctgtg ataaggctga aaacctgcca ttcgacatgc ggtttcctgt cattcttcca      4980
     cgcgatggac cagtgaccga acttctagta cgccactatc acgaaacgta cggtcacgct      5040
     ttcagggaaa ctgtaaaaat gagatcaaac agcgctttct catcatcaat ttgaacacag      5100
     tggtggccaa aatcgagcga agctgtactt ggtgcaaggt gaacaagaac tcgccaagaa      5160
     ttcccaggat ggcctccatt ccagtacaac gcctaacgcc ctacaagcga ccctttacct      5220
     ttgtcgggat cgactacctt gggccagttg aagtttcagt aggccgacgt gcagaaaaaa      5280
     ggtggatagt attatttact tgcctggtag ttcgggctgt ccacctcgaa gtggcctata      5340
     atcttaccgc acaatcatgt acgatggcga ttcggcgctt catctgtcgg cggggtcccg      5400
     cagcggaata tttttccgac aacggtacca accttaaggc tgccagtaaa gaattcgtcg      5460
     gaaggctgca agcaatagga agtgaatgtg cagaggaatt cactaccgca cgaacgaagt      5520
     ggcacttcaa tccacctgca gcccctcaca tggggggcat ttgggagagg atggtgagga      5580
     ctgtaaaaaa cgtgatggca gtattgaatg acggacgaag attaacggac gaactgcttc      5640
     tgaccaccct agctgaaact gaggatatgg tcaacagtcg ccctctagtt tacgcgccgc      5700
     aaggttctcc ccaggaatca ctctcaccta accatttcct tcggggaatt gcagccaacg      5760
     aaccgcatga agtactgcct ccaaccaacc ctgccctagc tcttcgtgat acatatcaac      5820
     gttcagtaga gttgtccaat aatctgtggg aacgttggct gaaggagtat acaccaagct      5880
     taaatcatcg cagaaagtgg ttcactgaat cttcgccgct gagaaaaggt gaccttgtct      5940
     acgtggtcga tggaaatcga cgtaaagcat ggattagagg agtagtagaa gaaccaatag      6000
     tttcgggcga tggaaggatc cgccaagcgg tcattagaac caattatgga cttgtgaggc      6060
     gagcgactgc taatctggcg gtactagaga tcgagggaag taacgctgct ccggatagca      6120
     attccggaac aggattacga gccggggata                                       6150
//
ID   BEL-49_AA-LTR repbase;    DNA;    INV; 596 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_AA_;
KW   BEL-49_AA-I; BEL-49_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-596
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions 1358910 1358315.
XX
SQ   Sequence 596 BP; 213 A; 98 C; 105 G; 180 T; 0 other;
     tgttcggaat atcgggacaa gcctgtaccg ccgagtatac tgaaccccct gttgaaggta        60
     tgacgaattg cgaccaacga tgagagaaac gtctgtcagc agaattacca atactaatat       120
     gataagagat gatgagaagg aacaattaaa aagcctggat tattgaagaa tcacgttttt       180
     cataagtgat gcgattgaac tattgaattc taaagtataa ttcgtttatt ttcatatata       240
     ttcgatattc ttagagagtg ctaatagttt tatatttgat acctatccac actgttaaaa       300
     gttatacgat ttagttatct aaaaaacaag atcctgaaaa gcagagtaag ttaacaatgc       360
     atatattatt aacgtataaa ctgatctagc caatcattca atcttaaggt caatcagacg       420
     accgttccct cctgtacaaa gaattaaccc tttggctgcc tgagaaagaa gaaaaacttg       480
     ttgtaagttt aaatgaattc ttaatttggt aaaaatgact aaaataaatc taattatagc       540
     ttcaagctgt caacaacgag actgctctga ggactgtttg tagttctatc cgaaca           596
//
ID   BEL-49_AnFu-I repbase;    DNA;    INV; 3616 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-49_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3616
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 696-696 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..3359
FT                 /product="BEL-49_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, and DUF5641."
FT                 /translation="MDQHTHAMEGSETATGGTSRDSAREDMPSGPSGAPST
FT                 PRTVREHDLPSEVSTPWYHTVAIDTIPQTRVQSKAGHTHRRYSQPSEENTE
FT                 RIIPDAGDAIPREPVRSKTGESYRHEARQGDAWAESETARMAYDERRQRKR
FT                 ELEREIRAIEEADRQDRMLAIERGTRGTREPEFDEWVRNMEDSMRHVARED
FT                 GTERGQNPRVISGDLHDTHTTNHQRATYLERATRSADATRPVYATRPVYAT
FT                 HSGYAAQPGYTHHATYPEYACRAAHPTYLGRATRLGDAPRIDNATHPGYNT
FT                 HLNYTTPHHYTSLHNSTFLSQSQIAARQPIKKDLPNFSGDVESWPIFITAF
FT                 HRTTATCGYTEDENVMRLQHALKGVALEMVGHLLAFPGGLDEAIATLQARF
FT                 GRPDLIVEATINKIRSMPAPKVEKLTTLVEFGLAVKRLVAAVKASGLHAYM
FT                 YDVALLKELVRKLPPTTCIDWARTRNTLPQVTLIEFGRWIGELTDDLCAVI
FT                 DMAPISGTGETDRRKPEPPLQPHRSQHQRFQTHQSQPVNPQPVGTGRVHPT
FT                 YLNATAVREVCGSAANSDDNVPVTDSACILCGKDCKSLDRCAKFRGTTVAA
FT                 RRAFVSERKICRKCLNYHDGRCNVMTSCGVDGCGRQHHELLHTEERSSTSS
FT                 AASKSPAEPGKTANVLTHTGLNEDVLLKYVPVTLHGPRGRVDTYAFLDDGS
FT                 TSTLIDHGLLVELGLSGTPHPLRLQWTGDVTRDEPDSVRVSLQISGRSRFS
FT                 TVHQLTGVHTLKEFTLPAQSVDMGQLAANYGHMKGLQLASYERAMPRVLIG
FT                 VDNCNLSRTLKTLGGKRDEPVASRTPLGWVVYGRCSVASGRPRSKAVAAKK
FT                 RYVSIVEHPSKVTPVLAEAARATMRDVKRAKSRTKSRGPRIKISADPPTAH
FT                 VLCKRGDRFPGYTRNERAKPETQYPSPFHIAEPPASKCVSSAADIVACREK
FT                 WHAAEIGGNKWVRAYRSILTRRTKWFQPVRPLKVGDVLVADNNLSRNRWPK
FT                 GRVATAIVAKDGQVRQDTIETASGTYVRPAHKIARLDVEGERTNHSKT"
XX
SQ   Sequence 3616 BP; 970 A; 926 C; 1029 G; 691 T; 0 other;
     ttccaaaaaa ttggatcgat tccaaaaaat tcgatcgaat agcgtaaatc ggttcgattc        60
     gaatcaagtt gtgtcgtctc attatcgttc agtttcgtgc gcgcgtctga ttttccacga       120
     ccgtcgggta accgtttcgc gaatcgaagt aagtaaatta cgcgcgcggt atcgagtgac       180
     gagtgaaagt gacaagtatg gatcagcaca cgcacgcgat ggaagggtcg gaaaccgcca       240
     ctggagggac gagtcgagac tcggcacgcg aggatatgcc tagcggcccc agcggagcac       300
     cgtccacccc gagaacagta cgcgaacatg acctcccgtc ggaagtaagc actccgtggt       360
     atcacactgt ggcgatagac acaataccac aaacgcgggt gcaaagtaag gcgggacaca       420
     ctcatcgccg ttattctcaa ccgtcggaag aaaacaccga gaggatcatc cctgatgcag       480
     gagacgcgat acctcgcgaa ccggtgcgga gtaagacggg tgagtcgtat cgtcacgagg       540
     cgaggcaagg tgatgcgtgg gctgagtcgg agacggcgcg gatggcgtac gacgaacgac       600
     gccagagaaa acgcgagctc gaacgcgaaa ttagggcgat tgaagaggct gaccggcaag       660
     accgcatgtt ggccatagaa cgcggcacac gtggaacgcg cgagccggag ttcgacgagt       720
     gggtgcgcaa catggaggat tccatgcggc acgtcgccag ggaagatggc acagagagag       780
     gtcaaaaccc tagggtcatc agtggtgacc tgcacgacac gcacaccact aaccatcagc       840
     gcgcgacata tctggagcgc gcgacacgct cagctgatgc gacgcgtccg gtgtatgcga       900
     cacgtccggt ttatgcaacg cattctggat acgctgctca gccgggatac acgcatcatg       960
     cgacatatcc cgagtacgca tgtcgcgcag cacatccgac ctacttaggt cgtgcgacac      1020
     gtttgggtga cgcaccacgc atcgataatg ctacacatcc gggatacaac acacacttga      1080
     actacactac accacatcac tacacttcac tacacaattc cacttttctc agccaaagtc      1140
     agatagcggc tcgtcaaccg atcaagaagg acctgccaaa tttctccggg gacgttgaat      1200
     cgtggccgat tttcataacg gcatttcacc ggaccaccgc tacctgtggc tacaccgagg      1260
     acgagaacgt catgcggctg cagcatgcgt tgaaaggagt agcgcttgaa atggtcggac      1320
     accttttggc ttttcccggc ggactggacg aagcgatcgc aacgcttcaa gctcgtttcg      1380
     ggcgacctga tttgatcgtg gaagccacga taaataagat taggagcatg ccagctccga      1440
     aggttgaaaa gttgaccacg ttagtggaat ttggattggc agtgaagcgg ttggtagcag      1500
     cagtgaaggc ttccgggtta catgcctaca tgtacgacgt ggccttgttg aaggagttgg      1560
     tgcggaagct acctcccacg acgtgcatcg actgggcgag aacaaggaac acgttaccgc      1620
     aggtgacgtt gatcgagttt ggtcgatgga ttggcgaact gacggatgac ctgtgtgctg      1680
     tcatcgacat ggcacctatt agcggcaccg gtgaaacgga ccgtcgaaaa ccggaaccac      1740
     cgctacaacc tcatcggtcc cagcaccaac ggttccaaac tcatcagtcc caaccggtta      1800
     atccgcaacc cgttggaacg gggcgtgttc atccaacgta cctcaatgcg accgcggttc      1860
     gggaggtatg cggcagtgct gcaaattcgg atgacaacgt tccggtgaca gattcagcat      1920
     gtattttgtg cggcaaggac tgcaagtcgt tggaccgatg cgcgaagttc cgcggaacaa      1980
     cagtagctgc aaggagagct ttcgttagtg aacgaaaaat atgccgaaag tgtctaaatt      2040
     accacgacgg cagatgcaac gtaatgacgt cgtgtggcgt tgacggctgt ggacggcagc      2100
     accatgaact gctacacaca gaagaacgat cttcgaccag ctctgctgcc agcaaaagtc      2160
     cagcagagcc aggtaaaact gctaatgttc tcacacatac agggctaaac gaagacgtgt      2220
     tactaaaata cgtacctgta acacttcatg gaccccgcgg ccgagtggac acctacgcct      2280
     tcctcgatga cggttcaact tccacgctca tcgatcacgg gcttttggtg gagttaggtc      2340
     tatctggcac acctcacccg ctgcgcctac aatggacggg agatgtgacc agagacgaac      2400
     cagattcggt tagggtgtca ctgcaaatat ccggccgcag cagattctcc accgtacacc      2460
     aactgactgg ggtgcacacg ttgaaggagt ttacgcttcc agcgcagtcg gtcgacatgg      2520
     gtcaactagc cgcaaattat gggcatatga agggactgca gttggcatca tacgagcgag      2580
     ctatgcctcg tgtgttgata ggtgtagaca actgcaatct aagccggacg ctgaagaccc      2640
     tgggcggtaa acgcgacgag ccagtcgcat cgaggacccc actgggatgg gtcgtttatg      2700
     gtcgatgctc ggtagcatca ggtcgtcctc gtagcaaagc tgtggcagcg aagaaacggt      2760
     atgtaagcat cgtcgaacat ccctccaaag taactcccgt tttagctgaa gcagcgaggg      2820
     caacgatgcg ggatgttaag cgcgctaaat cgaggacgaa atctcgcgga ccgcgaatta      2880
     aaataagtgc cgatccacca acggcacacg ttctctgcaa gcgcggtgat cgtttcccgg      2940
     gctacacgcg gaacgaaaga gccaaaccag aaacgcagta tccttctccg tttcacatcg      3000
     cagagccgcc ggcatcgaag tgcgttagtt cagcggcgga tatagtggcc tgtagagaga      3060
     aatggcacgc ggcagagatt gggggaaaca aatgggtccg tgcgtaccga tccatactca      3120
     cccgacggac taagtggttt cagccagtgc ggccacttaa agtaggagac gtgctggtcg      3180
     ccgataataa cctttccagg aaccgttggc cgaaaggacg cgtggcgacg gcgatcgttg      3240
     cgaaggacgg tcaggttagg caagatacaa tagaaacggc gagcggcaca tatgttagac      3300
     ctgcacacaa gatagcgcgt ttagacgtcg agggcgaacg aacaaatcat agtaagacct      3360
     aatagtaact taccacgagg tgtaggcgtc gaaaaaacaa aacaaacgca ctaacaaaac      3420
     aagtacgata gcggcgatat gacaggtctt gacaggaagt gaagcacagt cgcgtttaca      3480
     cgagtcgcga gatagggtaa ttgtgacgaa tcgatgaaac gttgcatgcg gcaacgatag      3540
     gaacgatcgt aacgaatcga tgaaacgtga ctgcgatagg ggaacgtaca cgactgtgcc      3600
     acacttggag ggacaa                                                      3616
//
ID   BEL-49_AnFu-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-248
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 751-751 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 248 BP; 97 A; 42 C; 60 G; 49 T; 0 other;
     tgttggaacc ttataaagga aggacgatca ggtcccaacg acctgtcaaa acatacgaga        60
     aaatagggat gtcaggagaa gaagaagaaa ggatggaaga aaaaacacgt ataaaaacgg       120
     caggatgcgc ccatagaggg gctcttttaa tacgcacgcg aataaagacc aattttttgg       180
     cgcaccatag agcggtgatt ggcaaaaaaa gtcttgttag ttagaaaatt acccgaaaat       240
     ttctaaca                                                                248
//
ID   BEL-49_CQ-I repbase;    DNA;    INV; 3658 BP.
XX
AC   AAWU01014131;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_CQ_;
KW   BEL-49_CQ-LTR; BEL-49_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3658
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 251-251 (2011).
XX
DR   GenBank; AAWU01014131; Positions   51491   47834.
XX
CC   'GATTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           673..3420
FT                 /product="BEL-49_CQ-I_1p"
FT                 /translation="MTTKADKKLADLLQKRERLVATREVVEKFVAAYDHEK
FT                 HAIQIPVRLETLNRTYKEFLSVQSEIEQLDKPEAFKAHLAVRCEFEDTFCE
FT                 AKGFLLSKADHHTAHADTSLNSSFTHSQGPSTFHHRLPKIDLPKFNGDESR
FT                 WISFRDNFVSMIHINEDIPVVNKLQYLLQSLEDPARKQFETVEIQADKYAP
FT                 TWEELLKKYDNKRSLRKTLFRRLYELPSMEGESAQHLNTLVDDFQRHVKAL
FT                 EKLGEPINQWDTPLVFILSDKLDYATLRAWEQDSSKKEVVTYEELIEFLNN
FT                 HVRMLKSFASDLQHRQTGNVKVAGASQKKSQSIKFIANAATSEIRTYTPQC
FT                 PSCSKQHLLYECPAFTKLAVIQRRELVTQRSLCWNCFRQNHQARACRSKFS
FT                 CRICQAKHHTLLHDPGAPDHTQDAAVASNSTAPQHNPPTTIGTFGLANSSE
FT                 TSLPIVAKQDTVLLETVNLLITDHHGRELLVRALLDSASMSNFVSNNLADL
FT                 LNIRRKNVDVTVAGLGESAKKIDQQITTTVKSLTSQFSTTLDFLIMKPPMV
FT                 NLPRSAVDIAHWNMPDVRLADPHFHRPGAIDILIGGEFYHELHTGQRKPIG
FT                 DGLPLLVETHFGWTVTGKIPTKSDGASTLCCFSTTARTLLVAPQPILELET
FT                 AKPNASHPTKQSSSTPTQTHNGRYVALLPRSKNPQVTHGNSRESATHRVST
FT                 HASRRKKVPSTKPAKKARLSHMRKDNNTKPHCCFGYPLASSFMQADLRSCF
FT                 GQTSPAVNGSGNEMIERQTEMQLTDKSPMRTCRAVPSKSLTFFNQPHLRKL
FT                 AEAESCPAPRQKKFYKQHVYKGEVSTAGEGLQKAEFAESSKIGRAVRNMLN
FT                 AKLECEQVSTVPFAPSPPVRSTGSFAVPDDARESSQPPPRAAETPKTGRAL
FT                 RNCSMRIRNANW"
XX
SQ   Sequence 3658 BP; 1041 A; 975 C; 871 G; 771 T; 0 other;
     tttggtcctt cgaaccggat aggaggacga cgtcgaacct gggacctgta gtgcggacgg        60
     ttagcgctgt agcggtgttg gtaagtggtc aatggaactt gaccacaaaa ggtgaggcac       120
     tcgatctagt actactaacg ttgacgggtt cccacatttg cactaatttg gctggttgca       180
     aatggtggac aaattgcatg acaaaatcgc atgtttggca aagtgaaagc ataaggcaaa       240
     agagcataat tctacgaatt agcgacaaac gcagctcaaa ttctacgcgc tgtgctcttg       300
     attcacttag agaggcacag agagcgaaaa gtgggcaagt aaagcaaaag tgggcaagta       360
     ctcaacgaat gcacttacag tgacgcaaac aaaagtgggc acgccaagtt ttggtggttg       420
     tagaaatttc aacaaaaaat ctgtctctag gaggaaactc gagactttgc gtttgggtgg       480
     tggcgtttag cggattcgca gatcgcgaaa agggcacacc acagctggaa acacgtttcg       540
     atttgtgtcc ctttcggtcg ttttcgttcg cgtacgcgta gagtaccacg cacgcgcgac       600
     ggtaagtggt attccgccgc aatcgtttcg cgtttcgttt cgtttggtga gtgagtagag       660
     tggagtgttg agatgacaac caaggcagat aaaaagctgg ctgatctgct gcagaagcga       720
     gagcgacttg tggctacacg agaggtggtt gagaaatttg tggctgcata cgatcacgaa       780
     aagcatgcta tccaaatacc ggtgcgacta gagacgttga acaggaccta caaggaattc       840
     ctttccgtgc agtcagaaat cgagcagctg gacaaaccgg aagccttcaa agcacatcta       900
     gcggtgcggt gcgaattcga ggatactttt tgtgaggcca aaggtttcct gctctccaag       960
     gcggatcacc acacagcgca tgcggatact tcgttgaact ccagctttac tcattcacaa      1020
     ggaccgtcaa cattccatca caggctgccc aagattgatc tacccaagtt caatggagac      1080
     gaatcaagat ggatttcatt ccgagacaac tttgtttcca tgattcacat caacgaggac      1140
     atccccgtag tcaacaagct acaatacctg ctacaatcgt tagaggatcc cgccagaaaa      1200
     caattcgaga ctgttgagat tcaagcagat aagtacgcgc cgacctggga ggaactctta      1260
     aagaagtacg acaacaaacg ctcgctgaga aaaaccctat tccgaagact gtacgagttg      1320
     ccatcaatgg aaggcgaatc agcacaacat ttgaacacgt tggttgacga cttccagcga      1380
     catgtcaaag ccctggagaa gcttggagag ccgatcaacc agtgggatac accgctcgta      1440
     tttattctca gcgacaaact ggattacgct accctacgtg cttgggaaca ggactcgagc      1500
     aagaaggagg tggtgaccta cgaggagttg atagagttcc tgaacaacca cgttcgcatg      1560
     ctgaagtctt tcgcaagtga cttgcagcac cgtcaaaccg gcaatgtcaa ggtggccggc      1620
     gctagtcaga agaaatccca atcaattaag ttcatcgcaa acgcagccac atcggaaata      1680
     aggacgtaca caccgcagtg tccgtcatgc tcgaagcagc acctgttata cgaatgtcca      1740
     gcatttacta agcttgcagt gatccagcgt cgcgagctgg tcacccaacg aagcctgtgc      1800
     tggaattgct tccgccaaaa tcaccaagcg cgtgcctgca gatcgaagtt ctcctgcaga      1860
     atatgccaag cgaagcacca cacgctgctg cacgacccag gtgcaccgga ccacactcaa      1920
     gacgcagctg tggcttccaa ttccacagct cctcaacaca acccgcctac aaccattgga      1980
     acctttggat tagcaaattc ctctgaaacc agccttccaa tcgtagcgaa gcaagatacg      2040
     gttcttttgg aaacagtaaa ccttctaatc accgatcacc acgggagaga actcctagtc      2100
     agagcgcttc tagattcggc atcgatgtcc aacttcgtct cgaacaacct ggcggacttg      2160
     ctcaacattc gcagaaagaa cgtggatgtc accgtagctg gactaggaga atctgccaag      2220
     aagattgacc aacaaatcac caccacagtc aagtcgctaa caagccaatt ctccaccacc      2280
     ctcgatttct tgatcatgaa accgcccatg gtcaacctcc caagaagcgc agtagacatc      2340
     gctcattgga acatgcccga tgtccgacta gctgatcctc acttccacag gccaggagcg      2400
     atcgacatcc tgattggtgg agaattctac catgaacttc acaccggaca acgcaagcca      2460
     atcggtgacg gacttccgtt acttgtcgaa actcatttcg gatggacagt aactggcaag      2520
     attcccacca agtccgacgg agcgtccacg ttgtgctgct tctccaccac cgctcgaact      2580
     ttactagtag ctcctcaacc cattttggag ctcgaaactg ccaaaccaaa cgcaagccat      2640
     cctaccaaac aaagttcctc cactcccacg caaactcaca acggaagata cgtcgcactt      2700
     cttcctcggt cgaaaaatcc gcaagtcacc cacggcaact cccgcgagag tgccacgcat      2760
     cgcgtttcta cccacgcaag ccgccgtaaa aaagtcccat ctacgaaacc cgccaagaaa      2820
     gctcgcctca gccacatgcg taaagacaac aataccaagc cccactgttg tttcggatac      2880
     ccgctagcca gctcgttcat gcaagcagat ctacgatcgt gcttcggtca aacatctcca      2940
     gccgtcaacg gttcaggaaa cgagatgatc gaacggcaga ccgaaatgca gctgaccgac      3000
     aaatcgccaa tgcgcacatg ccgtgccgtt ccgtcaaaat cgctcacgtt cttcaatcaa      3060
     ccacacctcc gcaagttggc cgaagctgaa agctgtccgg cgccaaggca gaagaagttc      3120
     tacaagcagc acgtctacaa aggagaagta tcaacggcag gagaaggctt gcagaaagcc      3180
     gaatttgcag aatcttcaaa gatcggtcga gctgtccgaa acatgctcaa tgcgaaattg      3240
     gaatgtgaac aggtgagtac cgttccattc gctccatctc cacccgttcg ttctaccggg      3300
     tcttttgctg ttccagatga tgcacgtgag tcaagtcaac caccaccaag agctgcagaa      3360
     actccaaaga ccggtagagc actccgaaac tgctcgatgc gcataaggaa tgcgaactgg      3420
     tgagcaccgt tccattgact ctaacccaaa cgttcggtct accgggtctt tgttgtttca      3480
     gatgatgcca cgtgattcaa gcaggtcggt tcgtcaataa tgaaccaccc acgtcctgaa      3540
     ggaatgtcat caatggatcg tgtcatggcg acacgaagtc ttcccgaacg ttgccgaaga      3600
     taaggagaga ggataagaga gttttgaaac agccacggct gtctcaaggt ggccggaa        3658
//
ID   BEL-49_CQ-LTR repbase;    DNA;    INV; 699 BP.
XX
AC   AAWU01014131;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_CQ_;
KW   BEL-49_CQ-I; BEL-49_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-699
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 252-252 (2011).
XX
DR   GenBank; AAWU01014131; Positions   47833   47135.
XX
SQ   Sequence 699 BP; 211 A; 158 C; 152 G; 178 T; 0 other;
     tggtcagctc tgaactgacc atgaaggtgt tgtacagttg taaatagtcc agattagttt        60
     tagcacacaa tttacacaga atgcattcga agacacaaac acacacacac acatttaggg       120
     ttagttaatt gaatttactt atgaactaaa cacacaaaaa ttagctgcat gcaaaatacc       180
     gaagttgctc tactacacgg tatcatcatc ctcgctgata tctctcagtt gggagaatct       240
     gtatctctac cgtgtgaagc agaattggaa aaaacgtagc ctagcagaag atcaattcga       300
     gaaccacgac agtacgaaat acatctcgca agcacaaacg tcgcgttctt cttgttcttt       360
     acattgccaa atcccaatat acaagtcgtg cagttaccaa atcgagtttg ttcttaatcc       420
     gaaatcgttc gacaatttta actcaaatcg tgaagattcg tcgtgatcgg tagtgatctg       480
     ttctctagtg ccgctgaaac aagtccagcg gactgagtgt gatcgttaag gtgatcgtga       540
     agcaacaacg acactttcac ggtggaaggt gcgaagtgcg agtgcctata gtgtacggta       600
     gtgaggtgtt acctgtctcc gaggtcttca ggtgccacca acgaaggtgg gaagcaaaac       660
     ctccaacgtc cggcgcaatt tcgagccccg gcccgaaca                              699
//
ID   BEL-49_DTa-I repbase;    DNA;    INV; 6199 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   12-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6199
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (12-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are ~99% identity to
CC   each other.
XX
SQ   Sequence 6199 BP; 1794 A; 1302 C; 1308 G; 1795 T; 0 other;
     ttttttggcg cccccgggtg gaccctttcc agacgactct ttgggacatc agcaagttgg        60
     ccacaacttc ggcattttat tggattttca atttccaagc tcatcttgcg agttggaaca       120
     tatggatttt accctgacca ggagtgcaca ggtaacgagt gaaagtgaat tacgagttat       180
     agagtgctta ttatataaca aacttaatga aatttgtgga aaacattgtg cggcaaaaaa       240
     taaaaatttt caggcctacg cacacataca tatgtatgca ctaaagcatt aaggtggacc       300
     gtaattcatt ttatcactcg gtgtaaaaaa aaaacctata aaatttgaaa acccaaaatt       360
     tacggcctat tgaataaaat aaataaattt ggcaatatat aaataaaaaa ataaaaataa       420
     aaatacataa tcgaataaat tgtgtgtggt aaccttttgg gaccacccta attgatttgc       480
     acttgaagaa gccgtttaag ctcgcataat tttggtgttc tttgtgcctg attccgcgca       540
     aaaaagtgcc ggtggacttg cgccaataga gaagtgcgca tcattgtcgg tacagtcgac       600
     aaattaccgt acattttttc agttctctct ttcgtcattt gtgcaaagca aattacccac       660
     ccccgtttgc attagttttg cttgcgcctt ggtgcttatg ctgcgtcggc agcgaatttc       720
     gttgttgttg ctttgacttt gttggtgaat tttattcctt ttatgtcttt gcattttcgc       780
     tgctttggca gtgaattcgg ttcattgatt ttgcattatt tgtattgctg cttgggcagt       840
     gaaatttaac gctcatctaa cacacacata cacacatata tacagtgcgt gtatcgcttt       900
     gtggtgttcg gccactcttg ttcgaaatat gtgcttcgct tcctggcatt cggccacacg       960
     tgttgcatca attccttttt ctcaaataca tttaatttcg tttggataat tgttggttgc      1020
     ctttggagca gagttgtaca attatgacga gaacaaaggg aaagggtcaa aacagatcgc      1080
     taggtgaaac cactttaagc cagtatacaa atgttattgc tgatatagaa cgcgttaaaa      1140
     ctacagttca aaagtactca gggtacgtcg acccagtaga aattgattgc cgtttagaaa      1200
     tactaaacca atatgtagaa aaagccttta agattaacca agatttggat gacattaata      1260
     cagatcttgt gtctcgcgct gatttagaag acttatgtgc gaaaacaaag gctttattaa      1320
     aaagcaaagg tactagtcac cacatcatcg ccaacactca agcaaattca accatgctag      1380
     gcgtaacttc tgctcaaggc aaaaaacttc ctcacatgaa actgccaaag tttagtgggg      1440
     agtatgcgga atataaaaat ttcattggac ttttcgaaaa cctcgttgag aatgaccttt      1500
     ctctttcaaa tgttgaaaaa ttcaattatt tgttgtcttg cttacagaaa gaggctttgg      1560
     gcacggtgaa atcgtatcaa gtaaccgatg ctaattaccc aaaagcgtta tctgccttaa      1620
     aaaacgttta tgataatagt tgtcttattg tttttgaaag cgtttcgaag ctgtttgaac      1680
     tcccgcagat gcaaggccct gcttcatcct cactacgttc tttgatagac acagtaagag      1740
     ccgtgtatga gtcattgttg tcattgggaa atgacaaaca gatttccaac gctatgctca      1800
     tacacttagt tatgagcaaa gtggattcta cgacacggtg aaaatgggag gagaatttag      1860
     attatacaaa actaccactt tgggatgatt gcgaaaaggc tcttaataaa aggtatcagc      1920
     acctctctgc tgaagaaaat tcttcaggag ggggagctcg tagagcaata tgagcgtaat      1980
     ggaggaaaaa agggaggaag aacttcgcta gcagtggcta agccaaatga acagcataaa      2040
     ccaaaatgct cgttttgcaa atcggatgac cactatattc aatcttgttc ttcttttgct      2100
     gctatcccat gcaataatcg tttcaagttc gttaaatcat tttctctgtg tataaattgc      2160
     ctgcgaaaag atcacacagt tacagcctgc aagtcgagca cttgcagagt ctgttctaag      2220
     ccgcatcata ctctattgca taggtacgca acagaaactc aagtggaatc ctctagacaa      2280
     gctctaccag gacaaacttc gacatctagt caattatcat ccactaatct agctgctagt      2340
     gattctgatc aagtcatatt agctacggca atagtaaaaa taaaggatca gttgggatct      2400
     taccacatgg ccagagcgct cttagactct gggtctcagg taaattttat taccgaaaac      2460
     cttgctaata ctttgaaatt acccaaatct cgaaaagaca tcaatttaat aggcataggt      2520
     aagacaaaat ctgccattcg gcatgccgtt caaactgata ttgcctctcg tttaaattcc      2580
     tttgaaacaa tgactgaatt cagtattcta aaatctatca cgtcctatca acccgaaagg      2640
     cttgtggaaa atgttaacat tccaagtcat attgatctcg ctgaccccct tttccataag      2700
     ccgcaacgtg tagacttgct gcttggggca gacgctttct tcgatcttct taaagatggg      2760
     cgtctgaggt gtaaacaaga ttctttaact ttacgtgaaa cagtttttgg ttggattgtg      2820
     tctggtcgtt gtaaaacccc acaaaataag aaagcttgct caacatcatt attaagtata      2880
     actggtgaat cgtcgctaga ctcaattgtt aaaaagttct gggagctaga tcaagttcca      2940
     aatacctcga atccaaattt atatacccca gaacagcttc tttgcgagca atcgttcaat      3000
     gaatctgtaa acagattacc ctcgggcagg ttgagtgtta aattgccgtt taaatctagt      3060
     ccgacgtgtc ttggctcgtc ctttgagaca gctaagagac gatttcttgg cttggagagg      3120
     cgaatgggaa aacaagcaga agtccgtgac atgtatatct cctttatgaa agaatacatc      3180
     tcactaggtc atatgagtgc aatcaataac acaatcccgt gtgagccata ttattttatc      3240
     ccgtaccagt gtgtgctcag accgcaaagc tcttcaacaa agttgcgagt cgtgttcgat      3300
     gcgtcaagca aaacatcatc acaaatatcg cttaatgata ctcttatagt tggtccaacg      3360
     atacagccat ctctctatgc aactttgctt cgtttccgtt tacatcctta cgcaattact      3420
     gctgacatca ctaagatgta ccgtcaagtg gaaattgacg agacccagag atgttttcaa      3480
     ttaatcatct ggagagagaa ccctaacgac caattgcaaa tttatcaatt aaatatagtt      3540
     acatatggca ctgcgtcagc accttttttg gctatccggt gtctgaaata cttgagtgac      3600
     atacatgcaa catcgcataa attggcatcg aaatcacttg ctaatgattt ttatgtcgat      3660
     gatttattag ctgggtgcag aaacgccaga ggaattagga ttgttgcagc aggagttgga      3720
     ctctgtatta aaaccatttg gatttggttt agccaaatgg tcatcaaact gccaacaatt      3780
     tcaagtttct gatgcgtcca ctccaattgg gtcgcaagat gacaccaaaa ctttgggttt      3840
     aatttggaat tccaaaagtg atgtgtttaa atactccgca gaccatcttt cactcgaatt      3900
     cgtgccgact aaaaggtcta ttttatcgtt tgtagcacgt ttatatgacc cgcttggatt      3960
     attgtgtcca attgtcactc gcgctaaaat tcttattcaa gaaatctggc tgcataagtt      4020
     agattgggat gaagcattgc ccacagattt acttgaacaa ttcaaatcgg taactaattg      4080
     cttttcaaat ctagattcac ttagcatacc tcgtcatatt ggaatcgcaa aaaatatgaa      4140
     atatcaaatt cacggattcg ccgatgcgtc aaagagagca tacggctgct gcatttatat      4200
     cagagtggag catcaggaaa gaacgtttac acgattgctc acagcaaaat ccagagtagc      4260
     acctctcaaa actaagtcgg tgcctcgtga aattagggat atgttgaact caccagtgga      4320
     cgacatcttt ttgtggtcgg actctgaggt ggtgctgtat tggattaaga agcacccatc      4380
     acacctgaac acatttgttg cgaatcgtgt agcagagatt caagaattga cttcgcaagc      4440
     tgtctggcgt catgtgccta ccagcgcgaa tccagcggac atcctttcac gtggctgctc      4500
     aactagtgag ctcgtggaat caatttggtt tacgggccca aacttcttaa aggaaaaccg      4560
     agcctattgg ccagtaaatc accacctgga acaccccaaa gatctctctg tgttagagat      4620
     gcggagagat accacagtct tgatcgcggc cgatgcactg aagaatccat ttatggatct      4680
     ggttaacaag tcttcatcat atttgaaaat tctgcgcatc gtgtcataca tgcttcgatt      4740
     tattaatggt aaatcgcaca agcagacttc actcgtgcca tcagcagaag aacttcgttc      4800
     ggcgttttta gcagtggtgt ctgcattgca gcgaatcgaa ttcgcaactg aaattgcaaa      4860
     gctacaaaaa tccttgattt tacaaccatc ctatcaaaaa cttaatccat ttttgtatcc      4920
     tcatcaatct ggcaagcatt tgtggtggct gctcagagtt ggcggtcgtt tgctgaaagc      4980
     gcctatgcca cacaatgcta aattcccgtt actcatgcca aaagattgcc gtttcgttaa      5040
     attataccta caatatttac atcattcaaa ttgtcatgca ggtccacgag ccttggtggc      5100
     tattcttcgg catgaaattt ggttggtgag cgctcgtcaa gcttgtaata gcattgtacg      5160
     gtagtgtgta cattgctttc gttataagcc agttttggca acccaaataa tgggagattt      5220
     acctgctgat cgtcttcatg gcaatagacc ttttgagatc agtggagtgg acttttgtgg      5280
     tccaattttg gtaaccttag gaattagagg gaagtcagct gtaaagatgt atattgccat      5340
     atttgtttgc tttgcctcta aggctgttca catagaactt gtttcagacc tcacttctaa      5400
     atcatttatt atgtgtttgt ctaggtttgt cggccggcgt gggcgggcac agaagatcta      5460
     ctgcgacaat gccaccaatt ttgttggtgc ctctcggatg cttcaagagt tcaaggatca      5520
     cttctttgcc aacaaggatg ccataatgga atttgctgcc acccgaggaa tcaccttttc      5580
     gttcattccg ccccgagcgc cgcatttcgg cggcctctgg gaggcggccg taaaatcggc      5640
     caaaggatta atgatcaagg ccgtgggaag tgcagtgctc cggcaggacg aactgaacac      5700
     cgtgctggtg gaggtagaag ccattctaaa ttcgaggccc attgtcgtgg acagcttcaa      5760
     ccccaacgat ggcgaagcag taaccccagc ccatctgttg gtcgggacaa cgctcgttgc      5820
     gctgccattc gtgttcagtc agccagtaac agacgacaaa ctgagctact taaagagatg      5880
     gcaactgata tccgccatca agcaacggct ttgggtagat tggcaacgcg attacgtctt      5940
     gagtctacag cagcggcaga agtggctgag cgagagccac aacatcgaaa tcggaactat      6000
     cgtcgtggac cacgaggtca acagtccgcc gcagcagtgg ctgctaggaa tcatcgagga      6060
     ggtgatcaaa ggcgcggatg gaaaggttcg agtggcagtc gtcagaacta aatctggcgt      6120
     gtatacgcgt tctattcatc ggttagctcc tgtaccaatt gaggaatctt gaagccctgc      6180
     agccgttcaa cgcggccga                                                   6199
//
ID   BEL-49_DTa-LTR repbase;    DNA;    INV; 495 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   12-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-49_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-495
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (12-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, ~99% identical to the other flanking LTR.
XX
SQ   Sequence 495 BP; 142 A; 99 C; 81 G; 173 T; 0 other;
     tgtttagtca tttcatttca ttgcaactcc tactgtttag atatattcaa ttacaactta        60
     aataattgct catatagttg catacatttt tgtaatacgc ttaagcttaa gtttactttg       120
     tttactcttg aattactact cttaaggaac atatgtacat atgtaaattt actctgtgga       180
     ctcttgaatt gctactctta aggtacatat gtatgtacaa attgcgctct ttaattgtta       240
     cgctcacttt gtcacacata ctggaatttg catgcttaca catacacgcg caattatgcg       300
     agcgcattag ttttaaagcc aaatgaattg gaaattaaag ggcacttgag aagaacaact       360
     gaaccaaagc gcatcaactt tattgtctgt cccgtccgtc tacgcgagtt agcctaccgt       420
     tataattcaa cttggacctt tagttgcttg tggcacagga ccactttaga aggacgttcc       480
     cgttttggac atcca                                                        495
//
ID   BEL-4_AA-I  repbase;    DNA;    INV; 5806 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   28-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_AA_;
KW   BEL-4_AA-LTR; BEL-4_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5806
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 857-857 (2011).
XX
RN   [3]
RP   1-5806
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           322..5769
FT                 /product="BEL-4_AA-I_1p"
FT                 /translation="MEKSSLRKNTLHHKSLLRRRNNILGSARLIQQFDEEY
FT                 DPQTQVNQVSLRIARLDELWKSFESVQDEIEVIEDEQEDFAESRQEFHDLY
FT                 FMLKASLMTKLPRDRAPVNPEPQVPQQSALPVHQIMSVKLPELKMPEFDGQ
FT                 PEQWIEFRDLFKSVIHSNLQLSAVQKLHYLRSSLKGDASRLISSIAITADN
FT                 YAIAWKTICDRYENTNYLVKQHMSALFRVPCVRKASSSALSELADEFNRHV
FT                 GILDKLENVDAHWNSFLVERLSSLLDEKSLIEWETQCKDEETPQYERLLEF
FT                 IRKRSRTLQKCTSSCNASSAIQVKSVKPKPTSSHVVSDNVMKCQSCKQAHP
FT                 LVQCDAFIKLSPSQRLDFAKKHRLCINCLRGGHMARDCRSSLCRMCGKKHH
FT                 SMLHLPTPASNSAVIATPSEEQSTNTSQACTAICTTATTTSQXESSYSVAN
FT                 AQPVVLTRTLPQAIVPISQNASSPLVAIGQPPSPSPVVSNGQTESVHLPCP
FT                 PQPQQQATSLTEANNTFDSIVFLSTAVVRVRDVNNVYHFARALLDSGSQSN
FT                 FVSESLCQKLDLKRTRINLPVSGIGQATVNVHYKVDIALSSRFGGFEQQIX
FT                 CLVLPKLTVSLPSRSIDISRWTIPRNLPLADPRFNISHGVDLIIGAELFFT
FT                 LLEAQKLTLADGFPTLQKTVLGYVVSGNAPSKSPETXVCHVATDQDLNAQL
FT                 ERMWEVDDFDVGRALTQEEQXVEDHFIRTVSRDDTGRYMVRLPFRESQVPF
FT                 LGDSYKSAVNRFSMMERRFXKDDELRTEYTQFMEEYLRLGHMEXCPSVDGP
FT                 QFFLPHHAVRRPESTTTKTRVVFDASSKSHGQLSLNDVLFTGPTVQPALLI
FT                 MVVNFRLPRYVFSADAEKMFRQVWVHPDDRKFLSIVWRSDPSLPLNHYHLK
FT                 TVTYGLACSPYQAARVLNKLAEDEGESYPLAAPVITKRFYVDDTLAGGDDL
FT                 EEVVETCRQLQELLARGGFTLRKWCANDPTVLRHIPRELLGSTGPTEIGRS
FT                 VITKALGLLWNPSTDRLSFQVPELGDLQIVTKRAVVSEMSRLFDPLGLLGP
FT                 VVINARIFVQGLWAKRLTWDEQLSDEESQWWQAFREDLANLKEITVPRHVV
FT                 ANCGHNYQLHCFCDASSKGYGSCVYVVGPNAAGEIESKLLIAKSRVAPLRG
FT                 LSIPRLELCAALLGSQLIHNLRTTTDFIGTAVFWSDSTVVLHWILSPPNDW
FT                 KVFVSNRIAEVQRLTRGLPWNYVPSELNPADRISRGXNPSQIIDDSLWWHG
FT                 PPFLTDTTATWPKCPSSWVINQETEQEKRAIVVLASVQDDNSIFDRYSELG
FT                 KLLKVVAMCIRFGRNCRRLKAERVYGNITPXEVDTALKSXVRLAQVNCFTK
FT                 EIKILKRHNVGPSGPADFESKSPLKNLNVCLDQSDMLRLDGRLKNAAGPHD
FT                 SKFPLILPANHQISLLIARSLHIRTAHAGPSLLLATMRQRFWPIRGRELVR
FT                 KVVRKCITCFRCRPTDYHQQMAPLPAVRVVPSRVFSKAGLDYCGPFNIRPL
FT                 YGRGANVKMYVAIFVCLVVKAVHFEIVPSLTSAACINAIKRFVARRGRLIE
FT                 LHCDNATAFVGADREXKSLRRQYIEQFKADEWKDYCLDSGITFHFIPARSP
FT                 HFGGLWEAGVKSFKYHFRRIFATNSYTLDEFTTAATHIESILNSRPLTPLT
FT                 DHPDDLAVLTPGHFLVGEPMFSIPEPDMTNDQVPRLSRXQELRRSVQNFWK
FT                 RWSRDYITQLHQRSKWRTSSPNIKKGALVLLKQEDLPPFLWNLGRVDETYT
FT                 GPDGLVRVVLVRTNRGVYKRAVTEVRVLPIDTTEGDQNPINQDAA"
XX
SQ   Sequence 5806 BP; 1524 A; 1402 C; 1400 G; 1455 T; 25 other;
     aatttatggt gccgaaaccc gggaggaaat cccacaaacg tgctttggtg aaccaccacg        60
     tgtagtgcct cgtgcttgaa acatagtgat tgtcktttgt cgctgctgaa attcagctaa       120
     acaccctttc twcataastt tggtgggcac tggtgtcgwt ttcaccaaaa cgagtatttc       180
     ggaagcgatt agatctcgag tacccgtcga tcaggcggtg gatatagtta acctcaaacg       240
     gcgagggcgt accatctagt agagtgtcgt gaggaaaccg ctttgtaggt ctgtgccttc       300
     tggtgagtgt gtgcgcacaa aatggagaag tcctcattgc gaaaaaatac tcttcatcac       360
     aaatcgcttt tgcgacgaag aaataatatc ctcggatcgg ctagactgat acaacagttt       420
     gatgaagagt acgacccaca aacacaagtg aatcaagttt cgttgagaat cgctcgtctg       480
     gatgaactgt ggaaaagttt tgaaagtgtg caagacgaaa ttgaagttat tgaagacgaa       540
     caagaagatt tcgcggaatc gcgtcaggag tttcacgatt tgtacttcat gttgaaggct       600
     tcgttgatga cgaaacttcc tcgtgatcgt gcgccggtta atccagaacc ccaagtaccc       660
     caacaaagtg ctctccccgt gcatcagatt atgtcggtta aactgccgga gttaaagatg       720
     ccggaattcg atggccaacc ggaacagtgg attgagtttc gtgacttgtt caaatccgta       780
     atacactcaa atctgcaact gtcggctgtg caaaaactgc attatttgcg cagcagttta       840
     aagggtgatg cgtctcggtt gatttcttcc attgcgatca ccgcggacaa ttatgcaatc       900
     gcatggaaga ccatttgtga ccggtacgag aatactaact acctagtgaa acagcatatg       960
     tcagctctat tccgtgtgcc ttgtgtgcga aaagcaagtt catctgctct atccgaattg      1020
     gcagacgagt ttaaccgcca tgttggaatt ctcgataaac ttgaaaatgt ggacgcccac      1080
     tggaattcgt tcttagtgga gcgtctcagc agcctactcg acgagaaatc gcttatcgag      1140
     tgggaaactc agtgtaaaga tgaagaaact ccgcagtacg aacgtttgct tgagttcatt      1200
     cgcaagagat cacgtactct acaaaagtgc acttcgtcgt gtaacgcttc ttcggctata      1260
     caagtgaaat cggtaaaacc caaaccaacc tcctctcatg tggtctccga caatgtgatg      1320
     aaatgtcaga gctgcaagca agctcatcct ttggttcagt gtgacgcgtt catcaagttg      1380
     agcccaagcc aaagactgga cttcgcgaaa aaacatcgct tgtgtattaa ttgtttaaga      1440
     ggtggtcata tggctaggga ttgccggagt agtttgtgta gaatgtgtgg gaagaaacat      1500
     catagtatgt tacatctacc aacgccagcg tcaaattcgg cagtcatcgc tacaccgagc      1560
     gaagaacaat caacgaatac ttctcaagct tgcacagcta tctgtacaac agcaacaact      1620
     acatctcaak ctgagagttc gtattcggtc gcaaacgcac aaccggtggt gctcacgcgt      1680
     actttacccc aggctatcgt accaatctcg caaaacgctt cgtcgcctct cgtcgcgatc      1740
     ggtcaacccc cctctccgtc gccggttgta tcgaacggtc aaaccgaatc agtgcacctt      1800
     ccatgccctc cccagcctca gcaacaagcc acgtcgttaa cagaagcaaa caatacgttc      1860
     gacagcattg tgttcctatc aacagcsgtt gtgcgagttc gagatgtgaa taatgtgtac      1920
     cacttcgcac gcgctctatt ggacagtggt tcacaatcga atttcgtatc tgaatcgcta      1980
     tgccagaaat tagacctaaa acgtacccga atcaaccttc ctgtaagcgg tatcggacaa      2040
     gcaaccgtga atgttcacta caaggtggac atcgcactat cgtcgcgatt cggtggtttt      2100
     gagcaacaaa tagmctgttt ggttctacca aaactaaccg ttagtcttcc cagccgcagt      2160
     atagacatct ctcggtggac cattccacga aacttaccgt tagcagatcc gaggttcaat      2220
     atttctcatg gagtggacct cattatagga gcggaattgt ttttcactct wctcgaagct      2280
     cagaaactaa cgcttgctga cggatttcca acattacaga aaaccgtttt gggatacgtg      2340
     gtctctggaa acgccccttc caagtcgcca gagacaawag tgtgtcacgt tgctacagac      2400
     caagatctaa acgctcagct ggaacgaatg tgggaggtcg acgacttcga tgtaggacgt      2460
     gcactaacac aggaagagca acawgtggaa gatcatttca tccgaaccgt atctcgtgat      2520
     gatactggac gctatatggt acggcttccg tttagagaat ctcaagttcc attcctwggt      2580
     gattcctaca agtcggctgt gaacagattt tcgatgatgg agcggcgttt tkccaaagac      2640
     gacgagctac gtacggagta cacgcagttc atggaagagt atttaaggct ggggcatatg      2700
     gaagwgtgtc catctgtcga tggcccgcag ttttttctcc cgcatcatgc tgttcgkcga      2760
     ccagaaagta caacgacaaa aaccagagtc gtcttcgacg ctagcagcaa atcccatggc      2820
     caattgtcgc taaatgatgt ccttttcacw ggccccacgg ttcaaccagc tctgttgatt      2880
     atggtggtga atttccgact tcccaggtac gtgttttctg ccgatgccga gaaaatgttt      2940
     cggcaagtct gggtccaccc agatgaccga aaatttctgt cgatcgtttg gcgttcggat      3000
     ccgtctttac ctttgaacca ctatcacttg aaaaccgtga catacggact agcctgttcc      3060
     ccgtatcaag ctgctcgcgt actgaacaag ctcgccgagg atgagggaga aagttatcca      3120
     ctagccgctc cagtaataac gaaacgtttc tacgtggatg acacccttgc tggaggagat      3180
     gatttggagg aagttgtgga gacttgccga cagttacaag aactacttgc tcggggagga      3240
     ttcacccttc gtaagtggtg tgccaacgac ccgacagtgc tacgtcacat acccagagaa      3300
     ctcctcggat ctacaggtcc cacggaaata ggacgtagtg taatcacgaa agcccttgga      3360
     ttactgtgga acccaagcac cgatcggcta agtttccagg tacccgagct gggggatctg      3420
     cagattgtaa caaaacgagc ggtagtgtcg gaaatgtcaa gactctttga cccgttaggc      3480
     ctccttgggc cggtagtaat caatgcaagg atatttgtcc aaggattgtg ggcaaagcgg      3540
     ctcacttggg atgaacagtt atcagatgaa gaaagtcaat ggtggcaagc attccgcgaa      3600
     gatttggcta acctgaagga aatcaccgtc ccacgtcacg tagttgccaa ctgtggtcat      3660
     aattaccagc tgcattgttt ttgtgacgcg tcatcaaaag gttacggaag ctgcgtctat      3720
     gtggtaggcc caaatgcagc tggagagatt gagagcaagt tgctaattgc aaaatcacgg      3780
     gttgctcccc tacggggctt gtccatacca aggttggaac tttgcgckgc tctccttggc      3840
     agccagctga tacataatct gcgcacaact acagatttta ttggaactgc ggtattttgg      3900
     tcagacagca ctgtggtttt acattggatc ctgtcgccac caaatgactg gaaggtgttc      3960
     gtctcgaatc gcattgcgga ggtgcaacgt ctaactcgag ggttgccatg gaattatgtc      4020
     ccatctgagc tcaatccggc ggaccgtata tcccgaggaw taaatccaag ccaaatcatc      4080
     gatgattcac tatggtggca tgggccgcca ttcctgacag atacgactgc aacttggccg      4140
     aaatgtccat caagttgggt catcaaccaa gaaactgagc aggagaaacg cgcaatcgta      4200
     gtattagcta gcgtgcaaga tgacaattct attttcgata gatattccga gctggggaag      4260
     ttactgaaag tagtcgccat gtgcatacgt ttcggtcgca actgtcggcg attgaaagcg      4320
     gaaagagtgt acgggaatat aactccacwa gaagtcgata cagcwttgaa atccwtggtt      4380
     cgcctcgctc aggtaaattg ctttactaaa gaaattaaaa tcctcaaacg ccataacgtt      4440
     ggtccatcag gtcctgccga tttcgagagc aaatctcctt taaaaaacct taacgtttgt      4500
     cttgatcaat cagacatgtt gcgcttggat ggtcgattga aaaacgcagc tggcccacac      4560
     gattcaaaat ttcctttgat tttaccagcc aatcatcaaa tcagcctttt gattgcccgt      4620
     tccctacaca taaggacggc tcatgcagga ccttccttgt tactagcaac catgcgtcaa      4680
     aggttttggc cgatacgtgg acgggaatta gttcggaaag tggtccgaaa gtgtataaca      4740
     tgtttccgct gtcgaccaac ggattaccac caacaaatgg ctccactgcc agcagtcaga      4800
     gtggtcccgt ccagggtgtt ttccaaagct ggtttagact actgcgggcc attcaacatt      4860
     cgtcctttgt atgggagggg ggctaacgtg aaaatgtacg tcgcgatttt cgtttgcctg      4920
     gtggtaaaag cggtacattt cgaaatcgtt ccgagtctca cttccgccgc gtgcattaat      4980
     gcaatwaaac ggtttgtagc tcgacgcggt cggttaatcg agctacattg cgataacgca      5040
     acagckttcg tcggggctga ccgcgagttk aaatcgttgc gtcgccaata tatcgagcag      5100
     ttcaaggcgg acgagtggaa ggactactgt ctcgactccg gaataacctt ccatttcata      5160
     cctgctcgct ctccacattt cgggggtctg tgggaggccg gagtgaagtc gttcaagtac      5220
     cattttcgcc gaatttttgc tacaaattcc tacactttgg acgagtttac tacggcagca      5280
     acccacatcg aaagcatact aaactcmcgg cctctcactc ctctcaccga tcaccctgac      5340
     gaccttgctg tgcttacgcc tggccatttt ttggtcgggg aaccgatgtt ttccatcccg      5400
     gaaccggata tgacgaacga ccaggtgcct cgactctctc gattkcagga gctacgccgc      5460
     tctgtccaga atttctggaa acgatggtcc agggattaca ttactcagct gcaccaacga      5520
     tcaaaatgga gaacttcctc accgaacatc aaaaagggag cgttagtcct tctgaagcag      5580
     gaggatctcc caccgttcct gtggaacctt ggacgggttg acgaaacata cacaggtccc      5640
     gacggtttag tgcgtgttgt gctggtacgc accaatcgcg gggtctacaa gcgagcagtc      5700
     accgaagtcc gagtgttgcc tattgatact acggagggcg atcaaaatcc tatcaaccag      5760
     gatgccgctt gatcgttgaa acggactgtt tcaacggggc ccggga                     5806
//
ID   BEL-4_AA-LTR repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   28-NOV-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_AA_;
KW   BEL-4_AA-LTR; BEL-4_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-391
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 858-858 (2011).
XX
RN   [3]
RP   1-391
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated with terminus.
XX
SQ   Sequence 391 BP; 116 A; 84 C; 71 G; 119 T; 1 other;
     tgttcagagc aaaatagtat gtaagattaa gaagatgatt tacaaatttt gaattattgc        60
     tgtataccag tttcccgatg aaccctgtca gtatttagca gtcgaattcg taaagaaaat       120
     aaaattagcg ttctctctca taatacatat ctcacataca ccaaaaggtt catttggact       180
     ctcactgaat tgtattcctt aagccagttg aattatacct ctcgttaaaa gcagacggaa       240
     tcgcgttttc ctttcgagac gatcgagaaa tacccaatta ctgtcggtct tacccaagaa       300
     gtcgcgaatt gtccactttg ggtctcgcca accgaaattc atccgtcgta tcgcckcgag       360
     ttcgctggtt agaaggtttc gcttctgaac a                                      391
//
ID   BEL-4_AnFu-I repbase;    DNA;    INV; 5709 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5709
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 662-662 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..5633
FT                 /product="BEL-4_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MNPDDAVPNPAANSTVRQLSPVRDSVEDTISLQELVQ
FT                 QAREANESFVRLTAQIAQLSPSVSRGFGVSLNAQREGAISPRTRTGTEDVR
FT                 FPSVATLPRRSVFGTPYISDTEREPVSPPPRRTIAFPDFLRYDAQPGPSAP
FT                 RRSDVNPHARSGQRTSALPDRDRDLQRALEDLEIEHLRERNRLMQSFEATG
FT                 QQRSPPPPPRVSIVPERFQANAFSAFDLSQTQYMARQGRKRDLPTFSGNPE
FT                 EWPMFIASFEYTTEACGYNDVENLDRLQKALKGKALESVRCRLMHPANVPG
FT                 VIDTLRMLFGRPEIIVHSLVNKVRAMPAPRHERLETLIDFGVAVQNLCATI
FT                 TASGLDEYMCNVALLNELTERLPSSLKLNWGCHRMSVGHVTLASFNDWLSH
FT                 LVEAASLVTISSVYTPGSSSGTRAPTSDGGNRQHRHVNAHQTTTATSRPAS
FT                 RPISTNQCCPVCQQQCAKVESCPSFLAMDVDARWRTVREKNLCRKCLERHF
FT                 TRCERREPCGTNGCVFLHNKLLHDGSRTRAEATNTSPTASNQICNSHRTAL
FT                 GERPLFRYVPVTLHGNGRNIETYAFLDDGSSATFMEHSLVEELGIQGTPHP
FT                 LCLWWTGNQKREEENSVRVSLRISGYEETGKVYVLPNVHTIKELALPQQSL
FT                 CAQKLQSTFTHLNGLKLSSYEHVTPRVLIGIDNCHLGHPLTYREGKSHEPV
FT                 AAKTRLGWIVYGPYNTIQNDTASSILHHHSPKMCPCSKDTDDKIEIQLKEY
FT                 FAIDSLGISKVTHPIGSKEDERALAILAATTRMKGDRYETSLLWRYNKIQL
FT                 PPSRAMAMQRFECLRKKMEKDPVLRAAIIQKMNDYKTKGYIRRLTANELSE
FT                 RRDTDWFLPIFPVINPNKPGKIRMVFDAAAKVNGVSLNTFLLKGPDQLVEL
FT                 LTVLYKFREFRIGVVGDIREMFFQVAMRLEDQRSQMILWNDGEADRTPDVY
FT                 AVTVMTFGAACSPCCAHYVKNINADRFKAEFPRAYECIVQEHYVDDMLASV
FT                 ETEDEAVLLAKNVRYVHAQGGFEIRNWLSNSNSVMEQLEATKAKEKDVNVG
FT                 TERIEKVLGMWWDTQSDTFRYKVTPRNDEQLLSGVKHPTKREVLRILMRIY
FT                 DPLGLLGNVLMFLKVLLQEIWRAGVGWDEQISGRLAEQWLRWISILPDVCH
FT                 IRVPRCYRQHTSTITRNIQLHVFCDASENGMAAVAYFRFEEGEKIECALIG
FT                 SKTRVAPLRFLSIPRLELQAAVIATRLANTIVKSHRLVISRTIYWTDSRDV
FT                 ICWLRSDHRRYSQFVAFRVGEILESTKAEDWQWLSTKLNVADDGTKWSRIP
FT                 DLSSSSRWLTGPSFLWQPENEWPISSIQPDDTAEELRRNLLFHTETKPLIH
FT                 IDRFSNWNRLLRSVGYVIRFSNNCAHRIKGTSITTGPLTQEELERAENVIL
FT                 QQIQREAFPEEIRRLENRVAGKRPWSKIIGKSSVLYKLSPTIDDNGVLRIS
FT                 GRLANCPMIDELLRNPIILPRRHMGTDLIIRSYHVRYRHCNHQTVVNELRS
FT                 RYYIPRMLTEYKRVRRSCQHCRNRDAVPEPPVMGNIPQQRTAIAQRAFTYT
FT                 GIDYFGPITVVVGRRVEKRWGVIFTCLTTRAVHLEIAHSMTTSSCILAIRR
FT                 FIARRGAPREMISDRGTNFVGASREMKEARKNVEDNKVIAEFTSPEMKWSF
FT                 NPPAAPHFGGCWERLVQSVKKVLSQFELPRLPNDEVLQSTLAEIEMIINSR
FT                 PLTYVPLDDELAPPITPNQLLLGSSNGSKPPAPFDDTSGAIKSTWKASQCN
FT                 ADLFWRKWVAEYLPTLTRRTKWFHQARPIEEGEIVMIADNNLPRNCWPKGR
FT                 VVAVVRAKDGQVRRATVQTTSGMIERPATKIAVLDVRKPT"
XX
SQ   Sequence 5709 BP; 1615 A; 1379 C; 1473 G; 1242 T; 0 other;
     ttttaaaaaa attcactttg tgcaagttgt gagtaagtga agtgactatg aatcccgatg        60
     acgctgtgcc caatcccgcc gcgaattcga cagtgcgaca actttcccct gtgcgcgact       120
     cggtggaaga cactatatcg ttgcaggagt tggtccagca agccagggag gcaaacgaaa       180
     gttttgtcag gctcaccgcg caaatcgctc aactgagccc tagcgtctcg cgaggtttcg       240
     gagtgtcgct gaacgcgcaa cgcgaaggcg cgatatcccc gcgcacccgc acaggaaccg       300
     aagatgtgcg ctttccttcg gtcgcaaccc tgccgcggag atcggtgttc gggacgcctt       360
     acatcagcga cacggagcgt gaacccgtta gtccaccgcc tcgaaggaca attgcgtttc       420
     cggattttct gcgctatgac gcgcaacccg gcccatcggc gcctcgacgt agcgatgtaa       480
     acccgcatgc tagaagcggg cagaggacat ccgcacttcc cgatcgtgat cgtgatcttc       540
     aacgagcctt ggaagacctg gagatcgagc atcttcggga gcgaaatcgg ttaatgcaat       600
     ccttcgaagc aaccggtcag caacgtagtc caccaccacc accacgcgtg agtatcgttc       660
     cagaaaggtt tcaggcgaac gccttctcag cctttgatct ttcgcagacg cagtacatgg       720
     cccggcaagg aagaaaacgt gatttgccta cgttctctgg caatcccgaa gagtggccaa       780
     tgtttatcgc ttctttcgag tacactacgg aggcatgcgg atacaacgac gtggaaaacc       840
     tcgaccgcct gcagaaggca ctaaaaggga aggcgttaga atcggtacgt tgccggttaa       900
     tgcatccagc caacgtacca ggcgtgatcg acacactccg catgctgttc ggtcgaccag       960
     agattatcgt tcactccttg gtgaacaaag ttcgagcgat gccggcgccg aggcatgagc      1020
     ggctcgagac gttaatcgat tttggagttg cagttcagaa cttgtgtgcg acgatcacgg      1080
     catcagggct cgacgaatat atgtgcaacg tggccttgtt aaacgagctt acggagcgct      1140
     tgccctcgtc gcttaagctc aactgggggt gtcaccgtat gagcgtgggt catgtaacgc      1200
     tcgcgagctt caacgactgg ctgagtcatt tggtcgaagc agccagtttg gtaaccattt      1260
     cgtcggttta cactcctggg agttcatccg gtacaagagc tcctactagc gacggcggta      1320
     acagacaaca tcggcacgta aacgctcatc aaacgacaac tgcgaccagt cgcccagcat      1380
     cgagacccat cagcacaaat caatgttgtc cagtatgcca acaacaatgc gccaaggtag      1440
     aaagctgtcc cagtttcctt gcgatggatg tagacgcccg ctggcgaaca gtgcgggaaa      1500
     agaacctgtg ccgaaaatgt cttgaacgac atttcacacg ctgtgaaaga agggagccat      1560
     gtggcacaaa cggctgcgtg ttcctgcaca acaaattgct ccatgacggc tcgaggacta      1620
     gggctgaagc gacaaacacg tcaccaaccg catccaacca gatctgcaac agccatcgca      1680
     ccgcgttagg cgagcggcca ctgttccgtt atgttccggt cacccttcat ggcaacggcc      1740
     gtaatataga aacgtatgcg ttcctggatg acggttcgtc agccaccttc atggagcact      1800
     cattagttga agagctggga atacaaggaa ctcctcatcc attatgcctc tggtggaccg      1860
     ggaatcagaa aagggaggaa gagaattcgg tgagggtttc tcttagaata tctggttatg      1920
     aggaaactgg taaggtatat gtactaccga acgtacatac tattaaggag ttggctcttc      1980
     cgcaacagtc tctctgcgcc cagaaacttc aaagtacctt tacgcacttg aacggcctaa      2040
     aactgtcctc ctacgagcac gtaacaccta gggttctcat tggcatagat aactgtcacc      2100
     tagggcaccc attgacatac cgtgagggta aatcgcatga accagttgct gcgaaaacac      2160
     gattaggctg gatagtatac ggaccctaca atacgattca gaatgataca gcgagcagta      2220
     ttcttcacca tcacagcccg aagatgtgtc cgtgttccaa agacaccgac gacaaaatcg      2280
     aaatccaact aaaggaatac tttgcgattg attcgttagg tatttcaaag gtgacacatc      2340
     ctattgggtc taaggaagac gaaagagcgc ttgcgattct tgccgcaaca acccgaatga      2400
     aaggtgaccg atacgagaca agtttgctgt ggaggtacaa caagattcaa ttgccgccta      2460
     gtagagccat ggccatgcaa cgatttgaat gtttgagaaa gaaaatggaa aaggatcctg      2520
     tgttaagagc tgccatcatc cagaaaatga acgattataa gacaaaaggc tacatccgtc      2580
     gcctcacagc gaatgagcta tccgaaagac gagacacgga ttggtttcta ccgatttttc      2640
     cagttattaa tcccaacaaa ccaggaaaaa tcaggatggt atttgatgca gcagctaaag      2700
     taaacggcgt tagtttgaac acgtttttgc tcaaaggtcc agatcagcta gtagaactcc      2760
     tgacagttct gtataaattc agagagtttc gaataggcgt agtgggagac atcagagaga      2820
     tgttttttca agtggcgatg aggctcgaag atcaacggag ccaaatgatc ctgtggaacg      2880
     atggtgaagc tgacagaaca ccagacgtat atgccgtgac cgtcatgacg tttggcgcag      2940
     cctgttcacc gtgttgtgcg cactacgtca aaaatatcaa cgccgacaga ttcaaagccg      3000
     agtttccccg tgcctacgaa tgcatcgtcc aggagcatta tgtcgacgat atgctggcca      3060
     gcgtagaaac cgaagacgaa gcggtgctgc tagcgaagaa cgtgcgatac gtgcatgcac      3120
     agggtgggtt tgaaattaga aactggctgt ctaattcaaa ctcggtgatg gagcagttag      3180
     aagcaactaa agcgaaagag aaggatgtaa acgtcggcac ggagaggata gaaaaagtat      3240
     taggaatgtg gtgggatacg caatccgaca cattcaggta taaagtcaca ccgaggaatg      3300
     acgaacagct gttgtcggga gtgaagcatc cgacaaaacg cgaagtttta cggatcctaa      3360
     tgaggatcta cgatccgctg ggacttttgg ggaacgtgct catgttcctg aaagtccttc      3420
     ttcaagagat ttggcgcgct ggagtcggat gggacgaaca gatcagtggt cgtttagcag      3480
     aacagtggct aaggtggatt agcatactac ccgacgtttg ccatatcaga gtacccaggt      3540
     gctaccgcca acatacgtcg acgataactc gaaacataca gctccacgta ttctgtgacg      3600
     cgagcgaaaa tggtatggca gcggtcgctt attttcgatt tgaagaagga gaaaaaatag      3660
     aatgcgcttt aataggatcg aaaacacgag tagcgccact gagatttcta tcgatccccc      3720
     gtttagagct gcaagcagca gtaattgcca cccggttagc aaatacgatc gtcaaatcgc      3780
     atcggttggt gatcagtcga actatatatt ggacagactc gcgtgatgtc atatgctggc      3840
     tacgatcgga tcatcggcgg tacagccagt ttgttgcctt cagagttgga gaaatcctcg      3900
     agtccaccaa agctgaagat tggcagtggc tgtcaacgaa actaaatgta gcagacgatg      3960
     gtacgaaatg gtcgagaatt cccgatttga gctcctcgag ccgatggctc acaggcccga      4020
     gctttctttg gcaaccggag aacgaatggc cgatttcatc gattcaaccg gatgatacag      4080
     cagaagaact acgtcgcaac ttgctgtttc atactgaaac taagccgctc atacacatcg      4140
     accgtttttc taactggaac aggctgctta gatccgttgg gtacgttatt cgattctcga      4200
     ataactgtgc gcatcgaatt aaaggaacat cgatcacgac aggaccgcta acacaagaag      4260
     aacttgaaag agctgaaaac gtaatactgc agcaaataca acgagaagcg tttcctgaag      4320
     aaatacgacg tctcgagaac cgtgtagcag gaaagcgtcc gtggtcgaaa ataatcggaa      4380
     aaagcagcgt gctgtacaaa ctctcaccca caatcgacga taacggagtt ttgagaataa      4440
     gcggacgtct agcaaactgt ccaatgatag acgaactgct gcgaaatccc ataattctgc      4500
     cgagacgaca catgggcacg gacttaataa tacgcagcta ccacgtgcgt tatcgtcatt      4560
     gtaatcatca gaccgtcgtt aacgaattac gatcccgata ttatattccg cggatgttaa      4620
     cggaatacaa acgtgttcga agaagctgcc aacactgtcg caatcgagat gctgttcctg      4680
     aaccaccggt aatgggaaat attccccaac agagaacagc tattgctcag cgtgcgttta      4740
     catataccgg gatagattat tttggtccaa ttactgtagt agttggacgc cgtgtggaaa      4800
     aacgttgggg tgtgatcttc acgtgtttga caacacgagc cgttcatctg gagatcgcgc      4860
     actcaatgac gacatcatcc tgcattctag cgattcgtcg ttttatcgcg agacgaggag      4920
     ccccgcgtga gatgatcagc gatcgaggaa ccaacttcgt cggagcatca agagagatga      4980
     aggaggcccg gaagaatgtg gaagacaaca aagtgattgc agaattcacc agcccggaaa      5040
     tgaagtggag cttcaatcca ccggcggccc cgcacttcgg tggctgctgg gaacgcctcg      5100
     tccagtccgt gaaaaaggtg ctaagtcagt ttgaattgcc gcgcttgccg aacgacgagg      5160
     tactacaatc tacactagcg gagatagaaa tgattataaa ctccagacca ctgacttacg      5220
     tgccgctgga cgacgagttg gcaccaccga taacaccgaa tcagttactc ctgggtagct      5280
     cgaacggcag caagccaccc gcaccatttg atgatacgtc tggagccatc aaatctacgt      5340
     ggaaagcatc gcagtgcaac gcagatttat tttggcgaaa atgggtagct gaatacctcc      5400
     ctaccctgac ccgcagaaca aaatggtttc accaagctcg ccccattgag gaaggcgaaa      5460
     ttgttatgat cgccgacaac aacctaccta gaaattgctg gccgaaggga agagtagtag      5520
     cagttgtaag ggctaaagac ggtcaggtac gacgagctac ggtacaaaca actagtggaa      5580
     tgatcgagag acctgcaacg aagatagcgg tgttggatgt tcgtaaacca acgtaacaac      5640
     gaacggaagc agatcgccga ctccgagtag ggtaaattgc gccttcgagc aatgtaccgg      5700
     gcgggagta                                                              5709
//
ID   BEL-4_AnFu-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   15-SEP-2021 (Rel. 27.02, Created)
DT   15-SEP-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-317
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 710-710 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 317 BP; 105 A; 65 C; 79 G; 68 T; 0 other;
     tgttgtagaa taacaacgga gtcggtagtt gttcacccct gacgtaacgt aactgacagt        60
     agacgagcgt gacgttaccg aaggggtgat cggtgcattg aacgcgcgaa gtaacggcca       120
     tcgcggaggt accatttttt ggcgacaaaa cagacgacaa aaccgacgcg gaaccagaag       180
     cgaaaaagac gtgaattttt ttaacgcccc gcgatacccg tgtttgcact cgtgcgacga       240
     aaaacgtaaa ataaacaagt gtacctaagt taaaaaagtg cgtcgaatta tttagaaaag       300
     aacgttactt tgtaaca                                                      317
//
ID   BEL-4_BTa-I repbase;    DNA;    INV; 8156 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-8156
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 616-616 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1067..5278
FT                 /product="BEL-4_BTa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 and ribonuclease H."
FT                 /translation="MADADELARQKEFLEQKRARIYNCVEKIQTASADVTL
FT                 ANNCHMYADTRERVKKLQEDFDACQDEILELNTRLSEDSQIPTVKMQDKFD
FT                 DLVDCALSNFLRYMKAPVSEPGGAPAAPPPAQSVATTLEHVRLGPLKVPTF
FT                 DGTVDKWPTFYNLYNAAVHNSTSSNVVKFQRLLSFLTGEPLSMIGTMDITG
FT                 ENYKVAYDMLKDRYQREKHCILRHYHGLLELPMVSNDTQMSQLLAKLREHI
FT                 HGLTALKHKTESYGNFLVAVILLKFNNFYRRRLDDARDHPTTYPTLSEIIN
FT                 FIKAECTLVGDSDLPSTANVKRSSYSSRNFLSHTASKNRSSYEQIAQRRGY
FT                 QPTRRVSAADTAPNFGPSHADAPASSSSSPTKYSNNKCKWCNANDHVIYGC
FT                 DTYLQLDTHDRAEGVKKKGLCYNCLSPHFVSACRSPRNCSVCNGRHHSSLH
FT                 FEENKLAPATLVNAATSRPPLVPPPHPEAHTAHSPISHDNAVPSAHLADDV
FT                 TQEATQINPLSDDAVLSAALASNSTPAPAYSILPTARVILRSAEGYKIPVR
FT                 LIFDSGAMSSFLTRRVAQLLHLKPNHGAPDVTGIAESPVSVDGVVTVDILD
FT                 LKENLAFANARLIVVNRLTGKIPPVSIPHEIREIFTSYDLADPLFTESDYC
FT                 DCLLGADIFPFLLTGLRVAPTQDGPIGLGTTLGLTVMGPVPSSEPNRKTAL
FT                 KRSSLALLTHTLDKISQKIADFWSIEQVTTSKPALTPDEEEAENLYVQTTV
FT                 QQENGRYKVRLPFRKNHPPLGQSRFQAENRFASLERRFAKDEKFHSLYKDF
FT                 MKNYKESNFMSVTKPPPSYQQHFYLPHTGVLKNSSTSPLLVVMDASAPTSN
FT                 GVSLNSILLPGPKLQNDIRDILIYYRCHPVVFSADIRQMFLQIDLHEDDRF
FT                 FQSILWRESVNDPLLVYLLNTVTFGLAPSPFLAIRTLRKHAQDHGEKYPEA
FT                 AKILLNSTFVDDILGGAETEEDAREIILALIALLALGDFHPRKWTSSHPSI
FT                 LEGFHASELEIPCLDDPNNPRFSILGMLWLAVKDAFTFNTEFSAPAKTKRG
FT                 ILSAIATLFDPLGLIAPVVLKCKAFMQELWRSHYDWDETLPSEIVEKWSRF
FT                 QRSMPALKELIIPRLLHRKGSSHFQIHGFCDSPEIGYSAALYLRSALENET
FT                 AHVSIIIAKTRVAPLKKVKLPRLELCAATLLAELLNAYLPQLETYYKIEKV
FT                 FCWSDSTTVLSWIRLPTYRLQTFVANRVTIIQSLRSDVVWRHVRSEDNCAD
FT                 PASRGLTPDELLNCKLWWEGPRWLSEDPTNWPVSLVEVPIESLPDIKTPIS
FT                 ALTASTPQFSLPKFSSWDKGVKILAWIARFINRTRVLASLKSKRPRSPAPK
FT                 HVKKGLKFPPLSSAELIRAELWLIRRIQTESFSDASSRRLR"
FT   CDS           join(5957..6535,6539..6817,6745..7797)
FT                 /product="BEL-4_BTa-I_2p"
FT                 /translation="MFGCPHAPHMNGIWESCVKSFKTHLRRTIGDKVLYLE
FT                 ELNTLCCRIEAMLNSRPLTALSADPNDLQPLTPGHFLIGRPLNSPPVYSFD
FT                 DADIPRLRRWHLVEGLFQQIWRRWQNEYIHSLLPRGKWTKDSPNLKVDTLV
FT                 LIQEPNQPPLSWKLGRIAKVHPGADGRVRVATVRTATSEYMRPVHKLYPLP
FT                 LEEFFLFIFFLRAFSFRAQRKSRPTAILIYFIIFLYVLLYFKKKKKKTLAR
FT                 KNSNVMLDRHALPKFIFYMISSTLNKHDVRFQKCRIQAPLPAPKRLDAKQT
FT                 RRTLSEMSDSGSSSSAETVISLYAPATDSLERRFPLEPAPEGWHWHTGPGN
FT                 CLPRLIKSYHLQTFAEDTTPAPQESSPSASPLANHPATSSAAPFLPVSPAN
FT                 QPAPRFNHPTASTATYRPGQPPAATACNFCGDRSHISHRCPELFSCTPEGR
FT                 YERVIAAGRCVNCFGSHRLPACKSPRVCQSCGGRHHSLLHGFFEKPKTLPP
FT                 QDGHATAEVFQRLAERATAEKAQEMKRREELIATCREAMTALEAAQVELER
FT                 LRKQRDHEVLQFRRWRTEQSALKDELLRERAALAEDITQLKAARAQLFAPP
FT                 PQPTWVPPQPSLPPPALPQVECTCEVCRVAARHRVGIPY"
XX
SQ   Sequence 8156 BP; 2117 A; 2110 C; 1657 G; 2272 T; 0 other;
     aatggtcctt cgagccggag ctaattaatc aagctctttg gcttacgctt ttttttacag        60
     tccacagtga tacaatgctt accctcgccg ctgaatttca ttattgctct tcttgcttaa       120
     caaattaacg aaaaagtagc tcgttctttt cgacctccgc tctttctctt ttctcgtgaa       180
     tccctcgcaa aagccatggc cgggggtgac agacccaccg agcctaccgc acacctactc       240
     tcagagtgct tctatactgc acctgctcaa actatttaga aatatgcttc acttcttgtc       300
     tcttctcttt tcagtgctat atctgccctt ttgttctctt ttgctttttt tggattctac       360
     atgaccagag atagcacgcc tcttgcactc taagcccctc gccgaataaa cctccatctt       420
     gtgaaactca acgcttccat agtaaattat ctataagtac taagaacctt atgttcacga       480
     ccatgcaaca gtttttccaa gttctctcga cttagcgcca attcctggtg ccaaccactc       540
     gcgtatcttt tcgctatttt ttgataagta tcaaagctaa atatttttct tgcctttttt       600
     tctgctcatt tatttgctag taaattttgc atcagtgtaa gactgtagta aaaagttagt       660
     gcattgctta gaattagtta cagtgctaac aatctcgctt cgaattaaga ttacttatct       720
     gagacaatat ttttccgctt ttctctattt tttctcacga tgtaaaattg caattcatgc       780
     aaaactgcag cttctgactt tgttctcaat gcttttagta gaatgcttta gagtagattt       840
     tggcttagtt gattgcttct tgctgacata ttttcgtagt gttacagtgt ctagtgcttt       900
     tgagtttttt tgtgcgtagc gcttctcttt ttgcattttt ttttatattg ctggcacgag       960
     cttgaattcg ctcttttttc tatccactta agtcaccgcg tttagttgtt cgctcctttt      1020
     tctatccaac taagtcaccg cgttcaatta atcaagaaaa ttcaaaatgg cagacgccga      1080
     cgaactcgcg cgtcaaaagg agttccttga acaaaaacgc gcgcgaattt acaattgcgt      1140
     cgaaaaaatc cagactgctt cagcggatgt aacactcgct aataattgtc acatgtacgc      1200
     tgacactcgc gaacgcgtca aaaaattaca agaagatttt gatgcatgcc aagacgaaat      1260
     tctagaattg aacacgcgtt taagtgagga tagtcaaatc ccgacggtca aaatgcagga      1320
     caagtttgac gatttggttg attgcgcttt aagcaatttt ttgcgttaca tgaaagctcc      1380
     tgtctcagaa cctggcggag ctcctgccgc cccgcccccc gctcaatccg tcgctaccac      1440
     attagagcac gtacgtttag gtccgctcaa agttccgact tttgacggta cggtagataa      1500
     atggccaaca ttttacaatt tgtataacgc tgcggttcat aattctacta gttcaaatgt      1560
     tgtaaaattt caacggcttt tgtccttctt aacaggggag ccgctttcca tgatcggaac      1620
     catggacatc accggtgaaa attataaggt tgcttatgat atgttaaaag atcgctatca      1680
     acgtgaaaag cattgcattt taaggcatta tcatggtttg ttagagctac ctatggtaag      1740
     caacgacact cagatgtctc agttactcgc taaattgcgt gaacatattc atggcctcac      1800
     cgcgcttaag cataaaaccg agtcttacgg aaattttttg gttgcagtaa ttctattaaa      1860
     atttaacaat ttttatcgga gacgcctaga tgacgcgcgc gatcatccta caacgtaccc      1920
     aacgctttct gaaattatta attttattaa ggctgaatgc acgcttgttg gtgattcaga      1980
     cttaccctca accgcgaatg taaaacgctc atcttactcg agtcgcaatt ttttgtcgca      2040
     tactgcatct aaaaatcgga gttcttatga gcagatagcg caacgtcgcg ggtatcagcc      2100
     cacgcggcga gtctcagccg cggacaccgc gccgaacttt ggaccgtcac acgccgacgc      2160
     tcctgcaagt tcgtcgtctt cgccgaccaa atactccaat aacaagtgta aatggtgtaa      2220
     cgcgaatgat cacgtgatct acggatgcga tacttatcta cagcttgata cccacgatcg      2280
     cgctgaaggc gtaaaaaaga aaggtctctg ctacaactgc ttatcaccgc attttgtgtc      2340
     tgcctgccgt tcgcctagaa attgttcggt atgcaatggt cgccaccatt cttcgttaca      2400
     ttttgaggaa aacaagctcg cgcccgcgac gctcgtcaac gcggcgacct cccgcccccc      2460
     gcttgttcca cctccgcatc cagaagctca tacagcgcac agcccgatct ctcatgataa      2520
     cgcggttcca tccgcgcacc tcgctgatga cgtcactcag gaagctactc aaataaaccc      2580
     gctatcggac gatgccgttt tgtctgcggc cctcgcgtcg aattccacac ctgctcccgc      2640
     ctatagtatt cttcccacag cgcgtgttat tttgcgcagc gcagagggtt ataaaatccc      2700
     ggttaggttg atttttgact caggcgctat gagctcattt ctgacgcgta gggtggctca      2760
     acttcttcat ttaaagccca atcacggcgc cccagatgtt actggaatcg ccgaatcacc      2820
     cgtgtctgtt gatggagtag ttaccgttga cattctagat ttaaaagaaa atctcgcttt      2880
     tgcaaatgcg cgccttatag tagtaaaccg cttaacagga aaaattcctc ctgtttctat      2940
     tccgcacgaa atccgcgaaa tcttcacttc gtatgattta gcagacccgc tgtttacaga      3000
     aagcgattat tgcgattgtt tactaggagc agacattttt ccatttttgc ttactggtct      3060
     tagggtcgcg ccgactcaag acggtcctat cggtttaggg accacactag gcttaactgt      3120
     catgggtcct gtgcccagtt ctgagcccaa tagaaaaacc gcacttaaac gttcatcact      3180
     cgctcttctt actcatacgc tcgataagat ttcgcaaaaa atcgcagatt tttggtccat      3240
     tgaacaagtg acaacgtcta aacccgcttt aactcctgat gaagaggagg cggaaaattt      3300
     atatgtgcaa accactgtgc aacaggaaaa cggtagatat aaagttagac tgccgtttag      3360
     gaaaaatcat ccccccttgg gacaatcgcg ttttcaggcc gaaaaccgct tcgcgtcgct      3420
     agaaagaagg ttcgcaaagg atgaaaaatt tcattcgctt tacaaggatt tcatgaaaaa      3480
     ttacaaagaa agtaatttta tgtctgtcac aaaaccgccc cctagttatc agcaacattt      3540
     ttacttgcca catactgggg ttttgaaaaa ttctagtacc tcgccgcttc tggtagtaat      3600
     ggatgcgtct gcccctacga gtaatggtgt gagtcttaat tccattttat tgcccgggcc      3660
     aaaactgcaa aatgatatac gtgatatatt aatttattac cgatgccacc ctgtggtgtt      3720
     ctccgctgac attcgtcaaa tgtttttaca aattgatctt cacgaagatg atagattttt      3780
     tcagtccatt ctttggcgtg aatctgtaaa tgacccgctt ttagtgtatc tattgaatac      3840
     cgtcaccttc ggtctcgccc catcgccctt cctcgctatc agaaccttac gaaaacacgc      3900
     gcaagatcac ggtgaaaagt accctgaagc tgctaaaata ttattgaaca gcacatttgt      3960
     tgatgacatt ttaggaggag ccgaaacaga agaagacgct cgtgaaatta tactcgctct      4020
     catagcgctt ctcgcgctcg gcgacttcca ccctcggaag tggacttcaa gccaccctag      4080
     tattttagaa ggttttcacg caagcgagtt agaaatccca tgtttggacg acccaaataa      4140
     cccccgcttc tcaattttag gaatgctctg gttggcagta aaagacgctt tcacgttcaa      4200
     taccgaattt tctgcgcctg caaaaaccaa acgcggaatt ttatccgcta tcgctacgct      4260
     attcgaccct ttgggcctta tagcccccgt agtcttaaaa tgcaaggcat tcatgcagga      4320
     attatggcgc tctcattacg attgggatga aactctgcca tctgaaattg tagaaaagtg      4380
     gtcgaggttc caaaggtcga tgcccgcgct taaagaactt ataattccgc gcttattaca      4440
     ccgcaaaggc tcttctcact ttcaaattca tggattctgt gatagcccag aaattggtta      4500
     ctcagctgca ctgtacctcc gctccgctct tgaaaatgaa accgcgcatg tatcgattat      4560
     tatcgctaaa actcgagttg cacccctcaa aaaggtcaag ttacctcgat tggagctttg      4620
     cgccgcgact ttattagccg aattactcaa cgcatattta ccgcagttag aaacttatta      4680
     taagatagaa aaggtttttt gctggtcaga ctcaactact gtattatcct ggatccgcct      4740
     tccaacatat cgcttgcaaa ctttcgttgc caatcgtgtt accataatac aatcgctccg      4800
     ttccgatgtt gtttggagac acgttcgctc agaggacaat tgtgccgatc cagcgtccag      4860
     aggtttaacc cctgacgaac tgctcaattg taaactttgg tgggaaggcc cccgatggct      4920
     atctgaggat ccgacaaatt ggccggtatc actggtagag gtacctatag agagtctccc      4980
     agacataaaa acacctattt ccgcccttac cgcttcaact ccgcaatttt cactgccaaa      5040
     attctcgtca tgggataaag gtgtgaaaat tctcgcttgg atagcgcgat tcattaatcg      5100
     aacgcgtgtc ttagcaagtc tcaaatcgaa acggccccgc tcccccgcac cgaagcacgt      5160
     gaaaaagggg ttaaaattcc cgccattaag ctcagcagag ttgataaggg cagaattatg      5220
     gttaattcgc cgtattcaga cagagtcatt ttcagacgcg tcatctaggc gtctccgata      5280
     aaaattgtta aattttaata gaattactgc aactaaaaaa tttccgtaag actcggtttt      5340
     atgcttaagc gcggtgaggc catgaatatg ttcacgtaat ttagcgagta actgagacat      5400
     ctgggtgtcg ttgcttacca taggtagttc taacaaacca tgataatgcc ttaaaatgca      5460
     atgcttttca cgctgatagc gatcttttaa catatcataa gcaaccttat aattttcatc      5520
     ggtgatgtcc atggttccga tcatggaaag cggctcccct gttaagaagg acaaaagccg      5580
     ttgaaatttt acaacatttg aactagtaga attatgaacc gcagcgttat acaaattgta      5640
     aaatgttggc catttatcta ccgtaccgtc aaaagtcgga actttgagcg gacctaaacg      5700
     tacgtgctct aatgtggtag cgacggattg agcggggggc acaaaagcag tgcacttaga      5760
     ggttgttcac gatttgtcta caccggattt cgtagccgct ctacaccgct ttgcttcccg      5820
     ccggggaagc ccggaaaagt tttttacgga tttaggatct aatttcgtgg gcgccgctaa      5880
     cttctataag agcctgcaaa atgatgaaac aaataaagaa ttccgcgaat ttattcaaaa      5940
     aaacaaaatt aacttcatgt ttggatgccc tcatgcacca cacatgaacg gcatatggga      6000
     aagctgcgtg aaatcattta aaactcatct ccgccgcacc atcggagaca aggttctata      6060
     cttagaggaa ctaaataccc tttgttgtag aatcgaagcc atgttaaatt cgcgaccgct      6120
     aaccgccctc tccgctgacc caaatgattt acaacccctc acaccaggcc attttttaat      6180
     aggaagaccg ctcaactcgc caccggtcta ctcttttgat gacgcagata ttccgcgttt      6240
     acggcgttgg catttagttg aaggactgtt tcaacaaatt tggagacgtt ggcaaaatga      6300
     atatattcac tcgctactcc cccgcggaaa atggactaaa gactctccaa atttaaaagt      6360
     agacacacta gtcctcattc aagaaccaaa ccaacccccg ctttcttgga aattagggcg      6420
     tatcgccaaa gttcaccccg gtgcagacgg ccgcgtgagg gttgcaaccg tacgcacagc      6480
     cacaagtgaa tatatgcgtc ctgtacataa attgtatccg ctaccgcttg aggaataatt      6540
     ttttttattt attttctttc ttcgagcttt cagtttccgc gcgcaacgaa agtcccgccc      6600
     aaccgctatt ttaatttatt tcattatatt tttatatgtt ctactctatt tcaaaaaaaa      6660
     aaaaaaaaag acgctcgcac gaaagaattc aaacgtaatg ctagacagac acgcactccc      6720
     aaaatttatt ttttacatga ttagctcgac gctaaacaaa cacgacgtac gctttcagaa      6780
     atgtcggatt caggctcctc ttccagcgcc gaaacggtaa tctcgctgta cgcaccggcg      6840
     accgactcgc tcgagcgccg gttcccgcta gaacccgctc cggagggttg gcactggcat      6900
     accggaccag gcaattgcct cccccgcctc atcaagagct atcacctcca gacgttcgcg      6960
     gaggacacca ccccggcgcc gcaagagagc tctccctccg cttctcccct cgctaaccac      7020
     cccgctacgt cttccgccgc ccctttccta cctgtttctc ccgccaatca acccgccccc      7080
     cgcttcaacc atccaaccgc ttcaaccgct acctatcgcc caggccagcc accggccgca      7140
     accgcctgca atttttgtgg cgacagatcg cacatttccc accggtgccc ggagctattt      7200
     tcctgcaccc ccgagggccg ctacgagagg gtgattgcgg cggggaggtg tgtaaactgt      7260
     ttcgggtctc accgcctgcc ggcttgcaaa tctccgcggg tgtgccagtc ttgtggaggg      7320
     cggcaccact cattacttca tggattcttc gagaaaccga aaacgctccc tccacaggac      7380
     gggcacgcta ccgcggaggt cttccaacgg ctggcggaga gagccacagc cgaaaaagct      7440
     caggaaatga agagacgcga agagctgatt gccacctgtc gcgaagccat gaccgctctt      7500
     gaggcggccc aggtggagct ggagaggctg cgcaagcagc gggaccacga agtcctccag      7560
     ttccgccgct ggcggacgga gcagagcgcc ttaaaggacg agctgctccg cgagcgagcg      7620
     gccctggcgg aagacatcac tcaactgaaa gcagcaaggg cccagctgtt tgcgccgccc      7680
     ccccagccca cttgggtgcc cccccagcct agcttgccgc cccccgctct ccctcaagtg      7740
     gaatgcacct gcgaggtgtg cagggttgct gcgaggcacc gtgtggggat cccatactga      7800
     aacatttcca aaatcttaat tcaccgctaa aataccgcta agaaatcgct aaaagttacg      7860
     tattatttta tttcttattt cttttttttt accttttttt taccttttca tatcgctctg      7920
     cccactattt tcactatttt actcaaattt taaacttatc gctatcccgc taaccactcc      7980
     ccaccgcccc caaccctcct ctttccttgc ttcttgcacc gcaaaccacc gcttctgcaa      8040
     ccgcaagtga gtttatttat cagccactag caaatagttt agttttagta ttagtttgta      8100
     agttcctcgc atttttcgtt ttgacgcctc gctgaggcgc caaggccggg ggtgtt          8156
//
ID   BEL-4_BTa-LTR repbase;    DNA;    INV; 847 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-847
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 596-596 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 847 BP; 136 A; 245 C; 193 G; 270 T; 3 other;
     tgttggcgcc gattttcatc gtattttttc gctatatttg tcgctacaag tcgggcttgc        60
     aggacggcag gaggagagag ccccgaggcg gctgatcggc caatcagagc tgattggaga       120
     ttttccccta ctttcccagt gagccatttc agacttcagc tcgcgtcgcc tcacttacgc       180
     cgagaacgtc gccgcgcttc tgtgatttct cctgctgctg ccctgctgct ctctgctgcc       240
     cgctgctgcc tttggawatc gctgctcttg ccgccatttg ccttcgctct caccgcttct       300
     catcgctctt ggtaaaacaa gcttgcttat ttagtagtag acgactattt tcctgcttta       360
     gttatgatgg tatgaatgag agtgtgcttg tgccgcccaa ccgcaccctt gcccttgcca       420
     ccgctccctt tttcctgata tgtccgcact tttgatcctt tacgcccccg cttgagagct       480
     gttaccatgc taggctagat ttctagcwta cgcgagtgag atggcgccag gtttcgcccg       540
     tgacgtcgag agcatgccgc ttcagcgccg catggctgta ccagactgag gacttcggtg       600
     agtgcttaga gtgcttattt ttcatatttt tatagtgcat tttctctctg tcatgtagat       660
     ttatccccat tttctckctt tatggactgg ccgctttgag ttcgacgggt tccatccatg       720
     cgctatctat gataggctcg gaactcgtcg ttccgaggtt gccagatcgc ttcgccctac       780
     tcttctttcc tctgtcctat tcctctctct attctatttg ctcccctagc tattggagac       840
     cgcaaca                                                                 847
//
ID   BEL-4_CoFl-I repbase;    DNA;    INV; 2026 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-4_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2026
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2311-2311 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..2006
FT                 /product="BEL-4_CoFl-I_1p"
FT                 /note="DUF1759 and retropepsin."
FT                 /translation="MASSADALLARQENLQNAIKNALANLTKLGTANYSNA
FT                 VITVRMNSLDTNWKEFKNNHLTLLSLQENLSEQDYIKNDVYAKTEEFYLTA
FT                 LATMLSLLETYPAPILPTAASSSQAPSAPTSSSRKLPEIKLPTFTGDYKLW
FT                 PEFRDLFISGVSSSSLLNNVEKLFYLKSSLAGDAAELVRGISLEGDNFQRT
FT                 WDALKDAFEVPRVQVDALLKGFFLMKCVSGEDAADLRRILSTAKNLVEGLK
FT                 NLKRPTISDDVLVYILANRLDAVTRRDWEKSLGTSREPAAFSQLTEFLEGR
FT                 ILTLSSVASSNGKGQRSIGMHAHQASYRSKVPVCSLCSLRHQLWTCEAFKA
FT                 RNPMQRREFVLEKQLCENCLGSHEVSTCRSGRTCFVCGAKHHTSIHVDAST
FT                 NTHVAVVSANSSVPIRCDEPLNVLVSETTSFAPTLLPTAWVSLVGADGQEH
FT                 CVRALIDQGSQCSFLSQRLANSLQLPRSPACVSIDGVGGVHPTAALGRSRI
FT                 TVKSRCAPYSLDVDVLLLKAVTSYRPRVHRPTDGWPHLRDLQLADRLDSPS
FT                 SEPIELLLGAAVYAQIIRPGLRQPQRPDAPIAQQTALGWILSGPIGPSKLP
FT                 STLSSNFARTSTHHNFIFS"
XX
SQ   Sequence 2026 BP; 490 A; 512 C; 498 G; 526 T; 0 other;
     ttttggtagc agagcgtggt tcgggattgc gagagtgaca tttgactgtt aaaaaactaa        60
     cacaatatac gctaagtgca gtgaccatcg tgtttgtgtg ccagtcagtg ccgtgaactt       120
     ttgattttgt gtaacgttct agcacggcgg gcggcatggc aagttcggct gatgcattac       180
     tcgcacgcca ggaaaacctt caaaacgcta taaaaaatgc tttggcaaac cttactaagt       240
     tgggcacagc aaattattct aacgccgtta tcacagttcg tatgaatagc ctggatacga       300
     attggaagga attcaaaaac aatcatctta ctcttcttag cctacaagaa aatctaagcg       360
     agcaggatta tatcaaaaac gatgtctacg caaaaaccga ggaattttat ctgactgccc       420
     ttgccactat gctgtcgctt ctcgagactt atcctgcgcc gatacttccg actgccgcat       480
     cgtcttctca agctccgtca gcacctacgt catcttcgcg caaactgccc gagatcaagt       540
     tgccgacctt cacgggtgac tacaagttgt ggccagagtt tcgtgacttg tttatttctg       600
     gcgtttcttc cagctcgtta ttaaacaacg ttgaaaagtt gttttattta aaatcgagtc       660
     tggccggaga cgcagctgag ctcgtccgcg gcatctctct cgagggtgac aattttcaac       720
     ggacttggga cgcgctgaag gatgcatttg aggtgccacg cgtgcaagtt gatgcactat       780
     taaaaggctt cttcttgatg aagtgtgtca gtggtgagga tgcggcagac ctccgtcgga       840
     tcctttcaac cgccaaaaat cttgtcgaag gccttaaaaa tcttaaacgg ccaacaattt       900
     cagacgacgt cttagtttat atccttgcaa atagactgga cgccgtaaca cgtcgcgatt       960
     gggaaaaatc gctcggaact tcgagagagc cggctgcatt cagtcagctg actgagtttc      1020
     tcgagggacg catcctgacg ctgtcaagcg tagcctcgag caacgggaaa gggcagcggt      1080
     caataggcat gcatgcgcac caggcatcat acagatcgaa ggtgccggta tgttctctct      1140
     gctccttgcg tcatcagctg tggacttgcg aagccttcaa agccaggaat ccaatgcaaa      1200
     ggagggaatt cgtgcttgag aagcagttat gtgagaactg cttgggctct cacgaagttt      1260
     caacctgtcg ctccgggagg acttgttttg tttgtggggc taagcaccac acgtctatac      1320
     acgttgacgc ctcaacaaac acccatgtag ctgtagtctc tgcgaattct tctgtgccga      1380
     ttcgatgcga cgagcctctc aacgttttgg taagcgaaac aacatctttt gcgccaacat      1440
     tgctacccac agcatgggtc agtctggtgg gggcggatgg ccaggaacat tgtgttcgag      1500
     cgttgatcga tcaaggatca cagtgctcgt tcctgtcgca acgcttggcc aactcactgc      1560
     agcttccacg cagccctgct tgtgtatcga tcgatggagt gggtggtgtt catcctacag      1620
     ctgcccttgg ccgaagcagg atcaccgtca agtctcgatg tgctccctac tctcttgatg      1680
     tggatgtgct tctgctcaag gcggtcacgt catatcgacc tcgagtgcat cggcctaccg      1740
     acggatggcc tcatctacgc gacctgcagc ttgccgaccg tttggattca ccatctagtg      1800
     aaccaattga actgctacta ggcgctgcag tgtacgccca aataatacga ccaggtcttc      1860
     gtcaacctca gcgtcccgat gcacccatcg ctcagcagac tgcattgggt tggattttat      1920
     ccgggccgat cgggccatct aagctgccat caactctatc atcgaatttc gccagaacat      1980
     cgacgcatca taattttatt ttttcataat aaaatggcgg gcggta                     2026
//
ID   BEL-4_CoFl-LTR repbase;    DNA;    INV; 494 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-494
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2281-2281 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 494 BP; 149 A; 104 C; 51 G; 190 T; 0 other;
     tgttcacgcc aatcgtgaac ttttaattct ctcttcattt tctaattttc tttagcacaa        60
     tacgttaaat gcaatagtta tatttcctgg aattgtaata gctttatctt tgctttatca       120
     tctaaaagta acacttatca attttataac tttcacttta catttataca tactttaatt       180
     tcagaactta tattttctta tcttatctct ctttttctac tctgactcat ataacgacta       240
     cagtgtatat ttgtatagtt aactttagtt attctctccg ctattattgt aataaatcag       300
     atacgtctca acaagcaaag agccaacatc aattgcgctc tgagctccgc taaccgctat       360
     tgtaaataca tacgctatta aataaacgct atttaaacta ctaccactca acagtttatt       420
     gatcctcagt aattcccgaa caatcgatat taagatcccc gcgttcgtca agcatttttt       480
     gcttgaacgt aaca                                                         494
//
ID   BEL-4_CQ-I  repbase;    DNA;    INV; 5735 BP.
XX
AC   AAWU01030743;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_CQ_;
KW   BEL-4_CQ-LTR; BEL-4_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5735
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 161-161 (2011).
XX
DR   Genome; AAWU01030743; Positions   19958   14224.
XX
CC   Positions [4788-5345] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..5735
FT                 /product="BEL-4_CQ-I_1p"
FT                 /translation="MAPKPKPDVLADCVVCGKPKGDDAETVECEACRLWAH
FT                 LACAGETGKVENYFCPNCSQSLQVPKTRKNAKKPKSDAGTTSGAADLPKDV
FT                 LEQLELERVEREKKMAQEVMIRMKRIEMEKSFAEQELRIEREMQEREFAAA
FT                 NEVRALKLKMEQEFLDKQKAAEEEFLAKQKELKKLVKKSKQKLEKAAVDPP
FT                 AGKGEGAGAGSTDTPKGVLEKPKLPVPKLSDSDHDSSGDESDEKEDPTTPV
FT                 SGSREVSDGPGKPVTKLTKEQLAARQAMSRHLPKFSGEPEVWPLFISSFKY
FT                 TTEACGFTNVDNLKRLVDCLEGPALTLVQGRLVLPDAVPDVIEDLRHMFGR
FT                 PEKLLRALLQKVRNAPAPTSDNLDTFIHFGITIKQVCDHLEVSGMKDHLNN
FT                 PMLVQELVERLPTSHQLDWVRYRRGKVNTPLRILSDFLSELVEDVSEVAEF
FT                 AALSLQEPTKAQGGKGKRNEFVHLHEATREKAAGGRTSMACYVCKQTNHLI
FT                 RNCSEFRGMRVPERMKTVERLKLCTVCLSSHGNSACHSKMRCQIGNCRGQH
FT                 HPLLHREEAARQFQRVDCNTHKVNGGVIFRTIPITMYAGSKAFNTLAFLDE
FT                 GSSSTLMEEYVANKLGVQGKLEPLVVSWTAEIDRHENQSRRVSLTLAARGS
FT                 REMFQLENVRTVSKLQLPAVAGVQVAEQVKEKPTILIGLDNIHLFAPLESR
FT                 VGQQGEPIAVRSKLGWTVYGPDTPKPLVHTFLNLHVVKPASNQELHDMMRD
FT                 QYVLDEAGVASFAVPESAEEQRAKKILEKTTKRTGERFETGLLWREDERRF
FT                 PDSYPMATRRLQALERKLDKNPTLKQNVSQQIAEYQSKGYAHKATAEELKT
FT                 PSNAVWYLPLNVVLNPRKPDKTRLIWDAAASVRGVSLNSQLLKGPDMLVPL
FT                 PRVVCRFRERPIALGGDIQEMYHQIRIREEDKQAQRFLFRENPADAPQVYV
FT                 MDVATFGSACSPSSAQFVKNLNADQYAEEYPEAAAAIKERHYVDDYYDSVD
FT                 TVEEAIRRANEVKFIHSKGGFNIRNWVSNSRKVLDAMGEQSVKTSVHFNQE
FT                 KSAFYERVLGIVWEPDQDVFCFAVASKPEFRDVLAGERRPTKRIVLSVVMA
FT                 QFDPAGFLGPITILGKILVQDLWRTGCEWDEMIDELAFQRWLRWINILADA
FT                 KHFKLPRCYFGNARWDEIEEIQLHIFADAGDKAYGCVAYFRAIVRGEVVVA
FT                 LVMSRSKVAPLKMLSIPRLELESCVLAARMSQAIHDNHSFPISKTFFWTDS
FT                 AVVLSWIRSDQRRYKQFVGFRIGAILSMTSLMDWNFVPTQHNIADILTKWG
FT                 KDPNVRPDSPWVCCPRFIHDQQVNWPKKSLPPPNTTEELRVHLLLHDVKVV
FT                 DTIVEVNHFSRWTMLVRTMACAHRFVSNLKRKTKGLPMETLRATKAQAKML
FT                 RPTTVPSVRVALQQDEYKQAEVYLLKMVQAESFIDEVKVLTRNKDRPADQW
FT                 LALEKSSPLYKLTPLVDEDGLLRMEGRTENAEFLPFDLRFPVILPKDHHVT
FT                 RMIVQHYHQWFGHGYRETIKNELRQRFFILGVNTLVRQVAAACVWCKVHRN
FT                 QPLVPRMAALPVQRITPNLRPFSYVGVDYLGPLDVSVGRRSEKRWVALFTC
FT                 FVTRAVHLEVAYGLTAQTCLMAIRRFICRRGPPVEFFSDNGTNFRGASKEL
FT                 VETVRSIGNDCAEVLTTSRTKWTFNPPAAPHMGGVWERLVRSVKEALEALD
FT                 DGRRLTDEILVTCLAEAEDMINSRPLTYVAQESSQAEALTPNHFIRGVSPN
FT                 EPNTVPPSPHPAEALRDAYKRSQQLADVMWQRWIKEYVPSVNQRTKWFGES
FT                 RPLKAGDLVYIVDGKNRKSWIRGVVEEPIVSGDGRIRQAWVRTTSGLVKRA
FT                 TARLAVLEIEGKPASEASEPGLRAGG"
XX
SQ   Sequence 5735 BP; 1314 A; 1457 C; 1898 G; 1066 T; 0 other;
     tcatcaaaga atttgtttcc ggcgtggaac ggttcaggat ggcccccaaa cccaagcctg        60
     atgttctagc cgactgcgta gtctgcggca aaccgaaggg tgacgacgct gagacggtgg       120
     agtgcgaagc ttgccggctt tgggcacatt tggcgtgcgc tggagaaacg ggaaaagttg       180
     agaactactt ttgcccgaac tgttctcagt cgctgcaagt gccaaagacc cggaagaacg       240
     ccaagaagcc gaaaagcgat gcgggcacta cttccggcgc tgctgacctg ccaaaggacg       300
     tgctggaaca gttggagttg gaacgagttg agcgggagaa gaagatggcc caggaggtga       360
     tgatccgtat gaagcggatc gagatggaga agagttttgc cgagcaggag ctccggatcg       420
     agagagagat gcaggagagg gagtttgcgg cggcgaacga ggtgcgcgcg ctgaagctca       480
     agatggagca ggagttttta gataagcaga aggctgcgga ggaagagttc ctcgcgaagc       540
     agaaggagct caagaagctc gtcaagaaga gcaagcagaa gcttgagaag gccgcggtgg       600
     atccaccggc tggcaagggc gagggagcgg gcgcgggctc gacggacact ccgaaggggg       660
     ttctagaaaa gccgaagtta cccgtcccca aactcagcga ttccgatcac gacagcagtg       720
     gtgatgagag cgatgagaag gaggacccga cgacaccggt ttctggatcg cgcgaggtct       780
     ctgacgggcc ggggaaaccg gtcacgaagt tgacgaagga gcagttggcg gctagacaag       840
     caatgtcgcg acatctgccg aagttctccg gggagccgga ggtgtggcct ctcttcataa       900
     gcagcttcaa gtacaccact gaagcctgtg gattcacgaa cgtcgacaac ttgaagaggt       960
     tggtggactg tctcgaaggg ccagcgctga cgttggtgca gggtcggctc gtgctgccgg      1020
     atgcggtgcc ggatgtcatc gaagacttgc gacacatgtt tggccggccg gagaagctgc      1080
     ttcgggcgct tttgcagaag gttcggaacg cgccagctcc cacgagcgac aatctcgaca      1140
     cgttcatcca tttcgggatc accatcaagc aagtgtgtga tcacctggaa gtttcgggca      1200
     tgaaggacca tctgaacaac ccgatgctgg tccaggagct ggttgaaagg ttgccgacaa      1260
     gtcatcagct cgactgggtg cgctacaggc ggggaaaggt caacactccg ctgagaatac      1320
     tgtccgattt cttgtcggaa ctggtcgaag atgtgtcgga ggtggccgag tttgcggcgc      1380
     tctcgcttca ggagccgacg aaagcacaag gcgggaaggg caagcggaac gagttcgtgc      1440
     acctgcacga agcgacgaga gagaaagcgg cgggtggcag aacgagcatg gcttgctacg      1500
     tttgtaaaca aaccaaccac ttgatacgga actgtagcga gttcagagga atgcgggtgc      1560
     ctgagcgcat gaagaccgtg gagcgcttga agctttgcac ggtttgcttg agcagccatg      1620
     gcaacagcgc gtgccattcg aagatgcgct gccagatcgg aaattgtcga ggacaacatc      1680
     atccgctact tcaccgcgag gaagctgcga ggcagttcca acgggttgac tgcaacacgc      1740
     acaaggtcaa cggcggggtg atcttccgga caattccaat caccatgtac gcggggagca      1800
     aggcgttcaa cactctggcg ttcctggacg aaggatcgtc gagtacactc atggaggagt      1860
     acgtggccaa caagctggga gtgcaaggaa agctggagcc gctggtcgtg tcctggactg      1920
     ccgagatcga tcggcacgag aatcaatctc gtcgggtgag cctgacgctg gcggccagag      1980
     gttcgagaga gatgttccaa ttggagaacg tgcggacggt ttcgaagctg cagttgccgg      2040
     cagttgcggg cgtgcaggtt gcagagcagg tcaaagagaa accgaccatc ttgatcgggc      2100
     ttgacaacat ccatctcttc gcgccgctgg aatcaagagt cggtcaacaa ggcgaaccga      2160
     ttgctgtccg ttcaaagctc ggctggactg tgtacggacc tgatacaccc aagcccttgg      2220
     tgcacacgtt cctgaatctg catgtcgtca agccggccag caaccaagaa ctccacgaca      2280
     tgatgaggga ccagtacgtc ctggacgaag ctggtgttgc gtcgtttgcg gtgccggagt      2340
     ctgccgaaga acaacgagcg aagaagatct tggagaagac gacgaagcgc accggagagc      2400
     ggttcgaaac cggtctgctg tggcgcgagg acgagcggcg attcccggac agctacccga      2460
     tggcaacgcg gcggctgcag gcgttggaga ggaagctgga caagaacccg acgttgaagc      2520
     agaacgtctc tcaacagatc gcggagtacc agagcaaggg gtacgcgcac aaagcaacgg      2580
     ccgaggagct gaagacgccc agcaacgccg tttggtatct gccactgaac gtcgtcctga      2640
     accctcggaa gccggacaag acaagactga tttgggacgc ggcggcgtcg gtgcggggtg      2700
     tctcgctgaa ctcacagctg ctcaagggac cggacatgtt ggtgccgctg ccacgagttg      2760
     tgtgtcgttt ccgggagaga ccgatcgcgc tgggtgggga catacaagaa atgtaccatc      2820
     agatcaggat cagagaggag gacaagcaag ctcaacgctt cctgttccgc gagaaccctg      2880
     ccgacgctcc gcaggtgtac gtcatggacg ttgcaacttt cgggtcggct tgctccccaa      2940
     gttcggctca gttcgtgaag aacctgaacg cggaccagta tgcggaggag tacccggagg      3000
     cagctgcggc gattaaggag cgacactacg tggacgatta ctacgactcg gtggacacgg      3060
     tcgaggaagc gattcggcgg gccaacgagg tgaagttcat ccactcgaaa ggaggtttca      3120
     acatccggaa ctgggtgtcg aactcgagga aggtgctgga cgcgatggga gaacaaagcg      3180
     tgaagacatc cgtgcacttc aaccaggaaa agtcggcttt ctacgagcgt gtactcggca      3240
     tagtctggga accggatcag gacgtgttct gtttcgcggt ggcctcgaag ccggagttcc      3300
     gcgacgttct ggcgggagag cgacgtccaa ccaagcggat cgtgctgagt gtggtcatgg      3360
     cgcaattcga tccagcggga ttcctaggac cgatcaccat tctcgggaag atcctggtgc      3420
     aagatctgtg gcgcacgggg tgcgagtggg acgaaatgat cgacgagctg gctttccaga      3480
     ggtggctgcg ttggatcaac attttggcgg atgcgaagca cttcaaacta ccaaggtgct      3540
     acttcgggaa cgcgcggtgg gacgagattg aggagattca gctgcacatc ttcgctgatg      3600
     cgggtgacaa ggcatacgga tgcgtggcgt acttccgagc gattgtccgg ggcgaagtgg      3660
     ttgtggcgct ggtgatgagt cggtccaagg tggcgccgct gaagatgcta tccatcccgc      3720
     gtctggagct ggagtcgtgt gtacttgcgg cgcgcatgtc ccaggcgatt cacgacaacc      3780
     acagtttccc tatcagcaag acctttttct ggactgattc ggcggtcgtc ctgtcgtgga      3840
     tccgctccga tcagcgtcgc tacaaacagt tcgtcgggtt tcggatcggt gccattttga      3900
     gcatgacgtc gctgatggat tggaacttcg taccgacaca acacaacatc gccgacatcc      3960
     tgacgaagtg gggaaaggat ccgaacgtcc ggcctgacag tccgtgggtc tgctgcccga      4020
     ggttcatcca cgatcagcaa gtaaactggc cgaagaaaag tttgccccca ccgaacacca      4080
     cggaggaact tcgcgtgcat ctccttctac acgacgtgaa ggtggtggac accatcgtgg      4140
     aggtgaacca cttctcaagg tggacgatgt tggtgaggac catggcgtgc gctcaccggt      4200
     tcgtgtcgaa cctcaagcgg aaaacgaaag ggctgccgat ggagacgctg cgtgcgacga      4260
     aggcgcaggc gaagatgctg agaccgacga cggtaccgtc ggttcgagtt gcgttgcagc      4320
     aagacgagta caagcaggcg gaggtgtacc tgctgaagat ggtgcaggcg gagagcttca      4380
     tcgacgaggt gaaagtgctg actaggaaca aggatcgtcc ggcggatcag tggctcgccc      4440
     tcgaaaagtc aagtccgctg tacaagctga ctccactggt cgacgaagac ggcttgctgc      4500
     ggatggaagg gagaaccgag aacgcggagt ttctgccttt cgatctgaga ttcccagtga      4560
     ttctaccgaa ggatcaccac gtcacccgga tgattgtcca gcactaccat caatggttcg      4620
     ggcacggata tcgcgagacg atcaagaacg aactgcgcca gcgtttcttc attctggggg      4680
     tcaacacact ggttcgacaa gtggcggcgg cgtgcgtctg gtgcaaggtg caccgcaatc      4740
     agccgttggt gccaaggatg gcggcgcttc ctgtgcaacg catcacaccg aatcttcgcc      4800
     cgttcagcta cgttggggtt gattatctgg gtccgctcga cgtgtcagtt ggacgccggt      4860
     ccgagaagcg ttgggtggcg ctgtttacat gcttcgtcac gcgtgcagtg catctggagg      4920
     tggcgtatgg gctgacggca caaacgtgtc tgatggcgat tcgtcgtttc atctgtcgtc      4980
     gaggccctcc ggtcgaattc ttctccgaca acggaacgaa ctttcggggc gcgagcaagg      5040
     agctggtgga gacggtgcgg agcatcggga acgactgcgc cgaggtgctg acaacgtcgc      5100
     gaacgaagtg gaccttcaac ccacccgctg caccccacat ggggggtgtt tgggagcgtt      5160
     tggtccgctc tgtgaaggag gcgctggagg cgttggacga cgggcggcgg ctgacggacg      5220
     agattctggt gacctgtctg gcggaagcgg aggacatgat caactcacgt ccgctgacgt      5280
     acgtggctca ggaatcatcg caagcggagg ccctcacacc aaatcacttc atccgaggag      5340
     tttcaccgaa cgaacccaac acggtcccgc catcccctca ccctgcagaa gctctacgtg      5400
     acgcctacaa gcggtcgcaa cagttggcag atgtgatgtg gcagcgctgg atcaaggagt      5460
     acgtgccgtc ggtgaatcaa cgcacgaagt ggttcggtga gtcgaggccg ctgaaggcgg      5520
     gcgacctggt ctacatcgtc gacgggaaga acaggaagtc ctggatccgc ggagtggtcg      5580
     aagagccgat cgtgtccggc gacgggagga ttcgccaagc atgggtgcga accaccagcg      5640
     ggctggtgaa gcgcgcgaca gcgaggctgg ccgtgctgga gatcgaaggt aaacctgctt      5700
     cagaagcttc ggaaccgggt ttacgggccg gggga                                 5735
//
ID   BEL-4_CQ-LTR repbase;    DNA;    INV; 774 BP.
XX
AC   AAWU01030743;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_CQ_;
KW   BEL-4_CQ-I; BEL-4_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-774
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 162-162 (2011).
XX
DR   Genome; AAWU01030743; Positions   14223   13450.
XX
SQ   Sequence 774 BP; 287 A; 146 C; 185 G; 156 T; 0 other;
     tgttgaggcc gctcactgcc gcgacggggt cgacaccatg ctgctgtgtg ggaacgaacg        60
     ccgcgtcgac atctcacgcg cgtgagacgt gaggaagaag gaagaaacaa tgacgaaaca       120
     cacgagcaga gggacgacaa atcaaaacaa agtcacaacc caaatttatg agcacaagtt       180
     ggtcagggaa aagaaagtgg agtgattttc ggataattag gaggaagttt gaggattagg       240
     attttgattt agaatcgagg attcgggaga ggagtttgtg ggccgggtga acaacaagta       300
     gacggacaca aattcgtaag ttgttattta atttgaaaca aacagtgaaa taaataacac       360
     aaagttcatg caacacgaaa caggaaccac acgcggataa atccgggtgg tgattcacgg       420
     agggaggaca agacggttta ggacggaaca ggacagaacc gctgtctttg tacgagtaag       480
     ttcgaaacag ataaacatga aaaatataac aaacaaaaac atgcaaaatc tgtactaaca       540
     tgtaaaaccg aacacgctgt taaacataac ctaaaattac agctacaaca caaacgtaga       600
     acacaaatcc ggatcgggtt ggacggaaaa caggaaacaa acaaattgta agcacaatta       660
     cacacacact acacacacat tgtactaaac ttaaatctaa tttgcagctt tgatctgcct       720
     taaataaatt gggctgattc gcaaggaggt ttatttccgt tggcgtccag aaca             774
//
ID   BEL-4_DAn-I repbase;    DNA;    INV; 7475 BP.
XX
AC   AAPP01018099;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DAn_;
KW   BEL-4_DAn-LTR; BEL-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7475
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018099; Positions   15682    8208.
XX
CC   'GACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..7448
FT                 /product="BEL-4_DAn-I_1p"
FT                 /translation="MALSNINALLDKQLITGEEIQNVIRNYKKDSPERKQQ
FT                 PDYFQKRIEKLVKLWEIFFKDDLIIKSTTEGAKIEHSYFENNYFNQIRDLV
FT                 VTYKGEFNKQLSTVQMDTGSVASSEEESELEPMIREQRALLISLERIMNKM
FT                 TNETRQGFVPIINQYWDKITTIHIEIYKKFEDPAKLGYLDQRYLAAEDAVI
FT                 AVQTMTCEESISRPANIPQMHASLPLPKVEIPKFDGDYLKWQQFHDIFKKM
FT                 IHEASLPIIQKMWYLKTSITGEAERLIRHLSLTEGNYATAWNMLQERFSNK
FT                 RVLSNALIQKILDQPSITNDAKSIKAMHDNIKETLSALCNIGIQTENWDPI
FT                 LLCSLTRKLDRQTHMLYEQSIVDLKKLQKLDQFLTFLEHRFLTLEATGSDK
FT                 INHTKKGTCAQIGTEYTCYFCNKPNHIMYKCNEFLKKTTAERLNWTQRNKL
FT                 CVKCFKRDHSAKECQKKNCFKCDKRHNTLLHLESKPDSKTAASASGIQTNY
FT                 VLLATARVIIEGNNGRMAEFRALLDSGSQVNVISERALNILALDVKKSELQ
FT                 INGIGGRTQTSKARVNVMLKSQHNNFNSRLEAIVLPHIVADQPGQSIDINR
FT                 WKLPKHIELADPNFDKTGRIDLLLGAEHYYDIMQDKHLSLGKGLPKLQKTK
FT                 LGWIVAGKLKHNSPRSTTCAALTEEDKVDEQITKFWELDSFSTDAPCLSPL
FT                 EKQCERHFLQHIQTAIDKKSIVRLPFMDNASALGESRDLATRRFLSLEKRL
FT                 LRDPQTKASYVEFMKEYEALGHMKVGHASEIKKARYFIPHHCVLKPESTTT
FT                 KLRVVFDASAVTSSGKSLNDLLHKGPTVQNSIFSILLRFRTYKYVFTADIE
FT                 KMYRQIWINPEDQYFQTIVWRNNPSEDLRYYRLKTVTYGTKAAPYLATKCL
FT                 QHIAQKGRKEYPNAAALENDFYVDDCLTGAETIPEALQRQQQLNKLLQNSG
FT                 FKLRKWCTNNSQVLQGVPREDITSNVQLEETSYEDYTIKTLGITWTPTTDH
FT                 LCGKTEIATKANISRRDVVSEIFRIFDPLGLFSPVVMKAKIFMQHLTKEGY
FT                 EYKDDLPAHLQEEWKRYREELKVLNTIKVPRHVYLGKTPVTAEIHTFVDAS
FT                 EKAYGAAVYIRATYKDKQRTIQLLCAKSHLAPINTITLPRLELKAAVLGAQ
FT                 LTSKVKEDLAMKNASTFYWSDSRIVLSWINCSTSIRDKFVATRVATIHELS
FT                 LPKQWRHVASEHNAADVLSRGMTASKFAEHAMWFYGPMFLHGSSSTWPAPF
FT                 IATNEELIIMNPPKVSQSSVMTITKEEDIIYTIQHNNSFNKLLRIIAYIMR
FT                 FRRKKKYTSHTIEFEEITAARKIVFRNIQKIDFKDDIKHLKRQRETLKGSS
FT                 INSLSPFLDQNGILRVGGRLEAANISFDSKHPILLPYNDPVVKMILVQIHK
FT                 DNMHCGPQALLTASRQQFWILKGKTMARSTVRACVKCTKAKPKLMEQIMGN
FT                 LPPLRVTQARPFFNSGVDYCGPFKIHYKVRGKKPSTAYIAMFCCFTTKAVH
FT                 LELVSDLTTEAFLAALRRFIARRGKCQTLHCDHATNFVGAKNKLQELQEVI
FT                 FSDNAKTQILQECNNKGVQFKFIPPRAPHFGGLWEAAVKSAKHLLLKNVTT
FT                 ADLTYEELETVIVEIEAILNSRPLTPLSDDPNDVTALTPGHFLIGEPLTAQ
FT                 ADCEPSQQPKTLGNRWQAVSKLKHAFWKQWSQDYLQQLQQRQKWRRSSTNI
FT                 KEGTLVIMKEDNVPVLQWPMGRIVRVFYGKDNFARVVEVKTTKGIFKREIQ
FT                 HVAPLFNEEEPTDKHPIEEDEVEEENRAVEDRHLRKRPSHASITTVMIVML
FT                 LLLPLAWAQSIQITQFGSKPGIFFEKIGTTQLAVADWTIVAYFDLKPYWSD
FT                 MATFSKGTKKLGQMCATLNDAHSCEGMYQYFQQVENELIMENMLLAKSRKV
FT                 RAPLDIVGNIASSLFGVLDSQYAQDMSKTISKVKDNEDHVLELLQNQTSLV
FT                 DSTINVVKRDEIAYAKRFNLIESQMNAIIKDNYHWYITLTSQLTLLATNLH
FT                 RMQNEIIKVLTDVRHNTISPLLLSPRQLKEQCDQIRDHLKPDQMLPVNQEN
FT                 ILMAYKMMQAEGTIVDNHVIIKITVPLISTEVLHIYKLTPIPAANVYGFHL
FT                 FKIKTPFIAINNYRDKFVDMTTEDIANCYPKSINDFICHSKQSMFSTEMSC
FT                 EMQLFHNKTDTSCHLEITNKTVIWQEMHKKNQWIFATRTPIKFSAVCTDGT
FT                 SDIWLRNTGLLTARAGCTIRNSLITVISQTGIETSTLISYARFGEIDGNNT
FT                 TIKRQNTTSSKTNKFGYTKLLDLQRDLVPNRRLRLPHRLETIKHHHIAMYI
FT                 GLTFIIIILTIHWVRKWYKGDKRPQQVQVPAVAMRKTDTTSSPPFTINIDD
FT                 C"
XX
SQ   Sequence 7475 BP; 2684 A; 1521 C; 1459 G; 1811 T; 0 other;
     tttggtgacc cccgactttg gacacaggat tcatttggag aatcatactc gtatagttgg        60
     tcaactgggc gaccaaacta caaaaaaaaa taccaacaac tgatcaactt ggcgatcttg       120
     gacatcactg gatagtcaac ttggcagcaa caaaacagga gaaaatcaag ctccatagcc       180
     atagtattta aaagaatacc ttgaccgcct atttggttgt gagtagaggc acaacctgtc       240
     aaagcgacaa atcaaaatac ctccaacggg tcaggtatta tttaaaaaaa aaaaaaatgg       300
     cattatcaaa tatcaacgca ttgctggaca agcaattgat aacaggcgaa gagatccaaa       360
     acgtaataag gaattacaag aaggattcgc ctgagcgaaa acaacagcct gactacttcc       420
     aaaaacgcat tgagaagtta gttaagctgt gggaaatatt ttttaaagat gatttaatta       480
     taaaaagtac aacagaaggt gctaaaattg agcacagtta ctttgaaaat aattatttca       540
     atcaaataag agatttggtt gtaacctaca aaggagaatt caacaaacaa ttatccacag       600
     tacaaatgga tactggatcg gttgcttcca gtgaagaaga atcggaactg gagccaatga       660
     ttcgggaaca aagggctctg ctgattagtc tggaacgaat catgaataaa atgacgaatg       720
     aaactcgtca aggatttgtg ccaatcataa atcaatattg ggataagata acaactatcc       780
     acattgaaat ttataaaaaa tttgaggatc ctgcaaaact tggatatctc gaccagagat       840
     atttagcagc ggaagacgcc gtcatagcag tccaaactat gacatgtgaa gaaagcatct       900
     cacgtcctgc caatatacct caaatgcatg cctcattgcc gttgccgaaa gttgaaattc       960
     ccaaatttga tggtgactat ttaaaatggc aacaatttca tgacattttc aagaaaatga      1020
     ttcatgaagc atcattaccc atcattcaaa agatgtggta cttaaaaact agcattactg      1080
     gagaggctga gcgtttaata cgccatctat ccttaaccga aggaaactat gcaacagcat      1140
     ggaatatgct acaagagcgt tttagcaaca aaagagtgct aagtaacgcg ttaatacaaa      1200
     aaatattgga ccaaccatca ataacaaatg atgcgaaatc cataaaggca atgcatgata      1260
     atattaaaga aacattatct gcgctttgta acattggaat tcaaactgaa aattgggatc      1320
     caatactatt atgtagtttg acaaggaaat tagatcgtca aactcatatg ttatatgaac      1380
     agtcaattgt agacttgaag aaactgcaga aactggatca gtttttgacc ttcttggaac      1440
     atcggttcct tacattggag gctaccggta gtgataagat aaatcacacc aaaaaaggca      1500
     catgcgctca gattggtaca gaatatacat gctatttctg taacaaaccc aatcacatta      1560
     tgtacaagtg caacgagttt ttgaagaaaa caacagctga acgattaaat tggactcaaa      1620
     ggaacaagct atgcgtaaaa tgcttcaaac gcgatcattc agcaaaggaa tgtcagaaga      1680
     aaaattgttt taaatgcgat aaaaggcata acacccttct acatttggaa tcaaagcctg      1740
     actctaaaac agcagcatca gcaagtggaa tacaaaccaa ttatgtactt ttagccactg      1800
     ctcgagttat tattgaaggc aataatggac gaatggccga attcagagca ttacttgact      1860
     caggttctca agtcaatgta atctctgaaa gagcattaaa catattagct ctcgacgtta      1920
     aaaaatcaga gctacaaata aatggaattg gtggacgaac acaaacatca aaggcacgag      1980
     ttaatgttat gctcaaatca cagcataaca acttcaactc tcgattggag gctattgtat      2040
     tgcctcacat tgttgcagat cagccaggac agtcaattga tattaatcga tggaaacttc      2100
     caaaacatat tgaattggct gatcccaatt ttgataaaac aggaaggatt gatctactct      2160
     tgggagcaga acactattac gatataatgc aggacaagca tttatcgttg ggtaaaggac      2220
     tgccaaaatt acaaaaaacc aaactaggat ggattgtggc tggaaaatta aaacacaatt      2280
     cacccagatc aactacctgt gcagctctaa ccgaggaaga taaggtagac gaacaaatca      2340
     cgaaattttg ggaactggat tcattctcaa ctgatgcgcc atgcctatct ccactggaga      2400
     aacaatgtga aagacacttt ctccagcaca ttcagactgc aattgataag aaatcaattg      2460
     ttaggctccc attcatggat aatgcttcag ccctggggga gagtcgtgat cttgcaacac      2520
     gacgattcct ttccttggaa aaacggctat tgcgagatcc acaaactaag gcaagttatg      2580
     tggagtttat gaaagaatac gaagctcttg ggcatatgaa ggtaggacac gcaagtgaaa      2640
     ttaaaaaagc acggtacttc ataccacatc actgtgtgct caaacctgaa agtacaacaa      2700
     ccaaattaag agtggttttc gatgcatctg cagttacgtc atcaggaaaa tcgctcaacg      2760
     acttactgca caaaggtcct acggtgcaaa actctatatt ttcaattttg ctgcgattca      2820
     ggacttacaa atatgttttc acggcggaca tagagaaaat gtaccgtcaa atctggataa      2880
     atcccgaaga ccaatatttc caaacaattg tttggcgcaa taatccatct gaggatttgc      2940
     gatactacag attaaaaacg gttacctatg gaacaaaagc tgcaccgtat ttagccacaa      3000
     aatgcttgca gcacatagca caaaaaggta gaaaggaata ccctaatgct gccgcattgg      3060
     aaaacgactt ctatgtagac gattgcttaa ccggagccga aactatacca gaagctctac      3120
     agaggcaaca acagcttaac aaacttctac aaaattctgg attcaagtta agaaaatggt      3180
     gtaccaataa ttcccaagtt ctacaaggag ttccgaggga agacatcact tcaaatgtac      3240
     aactggagga gacttcatat gaggactaca cgattaagac cctcggaatc acctggacac      3300
     caacgacaga tcacctttgt gggaaaacgg agatagcaac aaaggccaac atatcaagac      3360
     gagatgttgt gtctgaaatc tttaggatat ttgatcctct tggtttattt tccccagttg      3420
     taatgaaagc aaaaattttc atgcaacacc tcacaaagga gggttatgaa tataaagacg      3480
     atctgccggc tcatcttcag gaggaatgga aacgctacag ggaggagcta aaggttctga      3540
     acaccataaa ggtaccacgt cacgtctact taggaaaaac acctgtgacg gcagaaatcc      3600
     acacatttgt tgatgcctcg gagaaggcat atggagctgc tgtatacatc cgagcaacat      3660
     ataaggacaa gcaaagaacg atccagttat tgtgtgcaaa atctcactta gcaccaataa      3720
     atacaataac gttaccacgt ctggaactta aggctgctgt attaggagca cagttgactt      3780
     ccaaagtaaa ggaagacttg gccatgaaaa atgcatccac attttattgg tctgattcac      3840
     ggattgtact gtcatggatt aattgctcaa catccattcg agacaaattc gttgccacca      3900
     gagttgcaac aatacatgag ctatccttac ccaaacagtg gagacatgtt gcatcagaac      3960
     acaatgccgc agatgtcctc tccagaggaa tgacagcttc aaaattcgcg gaacatgcca      4020
     tgtggttcta cggccctatg ttcctacatg gttcatcatc cacatggccc gctccgttta      4080
     ttgctaccaa cgaggaacta ataattatga atccgccaaa ggttagtcaa tcatccgtga      4140
     tgactatcac aaaagaggag gacataatat acacaataca acataataat tcatttaaca      4200
     agctactcag aataatagct tacataatgc gctttcgacg taaaaagaag tacacaagcc      4260
     acaccattga gtttgaagaa ataacggcag cccgaaaaat tgtcttccgc aatattcaaa      4320
     aaatcgactt caaagatgac atcaaacatc tcaagcggca aagggagaca ctaaaaggca      4380
     gttcaatcaa ctcactatca ccattcttag atcagaatgg aattttgcgt gtaggaggtc      4440
     gactggaggc ggcaaatata tcattcgact ccaaacatcc gatacttctg ccatacaacg      4500
     accctgttgt gaagatgatt cttgtgcaaa tacacaagga caacatgcat tgcggacctc      4560
     aagctttatt gactgcatca aggcagcaat tctggatcct taaaggaaaa acgatggcta      4620
     ggagcactgt aagagcctgt gtcaagtgca ctaaagctaa accaaaatta atggagcaga      4680
     tcatgggaaa tctgccacca ctgagggtaa cgcaagctcg accatttttc aactctggcg      4740
     tcgattattg tggaccattt aaaattcact acaaagtgag aggaaagaag cctagcacag      4800
     cttacattgc tatgttctgc tgttttacga ctaaagcggt acatctggag ctggttagcg      4860
     atctcacaac agaggcattc ttggcagcac ttcgtcgttt cattgctcgg cgagggaaat      4920
     gccaaactct tcactgcgac catgcaacaa attttgtggg agccaaaaac aagttgcaag      4980
     aactacagga ggttatattc tccgataatg cgaaaacaca aattctccag gagtgtaaca      5040
     acaagggagt tcagtttaaa ttcatcccac ctcgtgcacc acacttcgga ggattatggg      5100
     aagctgcagt aaagtcggca aaacatttat tactaaaaaa tgtgacgaca gccgatctta      5160
     cttatgaaga acttgaaaca gttatagtcg aaatagaggc catattgaac tctcgaccat      5220
     taacaccact gtccgatgac ccaaatgacg tcacagcatt aacgcctgga cacttcctaa      5280
     ttggagagcc gctaactgca caagctgatt gtgaaccatc gcagcaacca aaaacgttag      5340
     gtaatcgatg gcaggccgtt tcaaaactga aacatgcgtt ctggaaacaa tggtcacagg      5400
     attatctaca acagttgcag caacgtcaaa aatggagaag atcctcaaca aacataaagg      5460
     aaggcacttt agtaataatg aaggaagaca atgttcctgt attacaatgg ccaatgggaa      5520
     gaattgttcg agtcttctac gggaaggaca actttgcacg agtggttgaa gttaaaacga      5580
     ccaaagggat ctttaaacgt gaaattcaac atgttgctcc actctttaat gaagaagaac      5640
     ccactgacaa acatccaatt gaagaagatg aagtagaaga agaaaacaga gcagtggaag      5700
     accgccatct gaggaaaaga ccaagtcacg cttcgataac cactgtcatg attgtcatgt      5760
     tattattgtt accattagcc tgggcccaat cgattcaaat aactcagttt ggatcaaaac      5820
     cagggatatt tttcgagaaa attgggacaa cccaactagc agtggctgac tggactatag      5880
     tggcttactt cgatctcaaa ccatattgga gtgacatggc tacattttca aaaggaacaa      5940
     aaaaacttgg tcaaatgtgc gctacactta atgatgcaca ttcatgtgaa ggaatgtacc      6000
     aatacttcca acaagtagag aatgaactca tcatggaaaa tatgctattg gccaaatcac      6060
     ggaaagttcg agcaccattg gacatcgtgg gaaacattgc aagcagtcta tttggtgtat      6120
     tagattctca atatgcacaa gacatgtcga aaacaatatc gaaggtcaag gacaatgaag      6180
     atcatgtttt ggagttatta caaaaccaaa cgtccttagt tgattcaaca ataaacgtag      6240
     tgaaacgaga tgaaattgca tacgcaaaac gattcaacct aattgaaagt caaatgaatg      6300
     caataataaa ggataattat cactggtaca ttacactgac atcacaactt acgttgctcg      6360
     ctacgaatct acatcgaatg cagaatgaga tcatcaaagt gttaacagac gtgcgccaca      6420
     acactattag tccacttcta ttatcaccac gacaactaaa ggagcaatgt gatcaaatac      6480
     gggaccattt gaagcctgat caaatgttac ctgttaacca agaaaacata ctcatggcat      6540
     acaaaatgat gcaagccgaa ggtaccatag tagacaatca tgtgattata aaaataacag      6600
     taccattgat atcgacagag gtattacaca tatacaaatt aacaccgatc ccagctgcaa      6660
     atgtatatgg ttttcatctg ttcaaaatta aaacaccatt cattgcaatt aacaactatc      6720
     gagataagtt tgttgatatg acgacggaag acatagcaaa ttgttatcca aaatcgataa      6780
     atgatttcat ttgtcacagc aagcaatcaa tgttctctac agaaatgagc tgcgaaatgc      6840
     aactattcca caataaaaca gacacgtcat gccatctgga aatcacaaat aaaacggtca      6900
     tttggcaaga gatgcataaa aagaatcaat ggatatttgc gacaaggacg ccaataaaat      6960
     tctcagctgt ttgcaccgat ggaacatcag atatctggtt acgcaacacg ggactactga      7020
     cagcaagagc aggatgcacc atacgcaact ctttaataac agtaatcagt caaactggta      7080
     tagaaacatc gacgctcatc tcatacgccc gttttggaga aatcgatggt aacaatacaa      7140
     cgattaaaag acagaacacc acatccagca aaacaaataa atttggttat accaaactac      7200
     tggatcttca acgggatctt gtaccaaacc gaagactgag actaccacat agacttgaga      7260
     cgatcaagca tcaccacatc gcaatgtaca ttggcttaac attcatcata ataatattga      7320
     ccattcactg ggtaagaaaa tggtacaaag gagacaagag acctcagcaa gtccaggtac      7380
     cagcggtggc aatgaggaaa accgatacga cttcgagtcc gccgttcacc attaacatcg      7440
     atgattgttg aaactacgtt caacggccgg gagga                                 7475
//
ID   BEL-4_DAn-LTR repbase;    DNA;    INV; 414 BP.
XX
AC   AAPP01018099;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DAn_;
KW   BEL-4_DAn-LTR; BEL-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-414
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018099; Positions    8207    7794.
XX
SQ   Sequence 414 BP; 147 A; 93 C; 69 G; 105 T; 0 other;
     tgtacgagtt caagacatgc agaaaatcgt gcactgcaga taggcaacag atgatcctat        60
     acaaacaggt accgctgcgc atttacgacc tcacaccatc tgtcagcacg catgataagg       120
     acctgcatgc gtcataaacc taagcgataa aagataatgg tatcctattt tacaactgtc       180
     caaactagta aactataagc agataataat ttgacctaaa caaacattag ttctttaaga       240
     tcttgtatat aaaaaccctg catactccac aataaaatca gtactcaacg aaaactcgtg       300
     gtattcactt ctccgagctc aatttgtttc aagtacagat tgcggcaacg agattgttac       360
     tggtatcaag aaccggtggc agacaaaagc aacttttcag ctacacaatt taca             414
//
ID   BEL-4_DAzt-I repbase;    DNA;    INV; 5871 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5871
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 770-770 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           597..5870
FT                 /product="BEL-4_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSNDNISIGSASGGTPSTGAPPGESLASATSRIAFLK
FT                 LKTTAILNRLQGLVTQLDFEKLRQMDEYDLKGMLDSLTKLEDNFIVAHTSL
FT                 EEVDFEAMSSETPVQFDSSLLALRTALQRELGKRSQPAHCSTFRINPNESQ
FT                 SLIYMANRSRLPQLQLPKFSGEYTEWTSFYSMFTAVIDSEAELTSIEKLQH
FT                 LRSCLSGVALDTISSLEMTEDNYITALDILKARFSNKRLILQAHIRAVFGL
FT                 TRGDSSVGKLRAFVDAATSHLRALQALGSKEEIADAIIVYAIWRNLDRATQ
FT                 IKWEETASSQGLPSWEKLSTFLENRCRTLEGIQHAMHGQDDQVGKAEKTVS
FT                 TKHRKAFVASSAPAPVSCALCNGSSHTIANCERFKGLSPDERHKESRRLGL
FT                 CVNCLRKGHHVKDCRSGPCRTCRLKHHTLLHFGRSSETIQVGSPNEASQPQ
FT                 PSHTAMVALSPPLPQALISQSPSDAVLLATVVVLVKNSSGTFVPCRALLDS
FT                 GSQLHFVTSRIANQLKLRKTKSHTAVSGIGDASFSTEGISVDLVLKSRISE
FT                 FTTSITAVVAQKITDHQPRSSISIANWHIPSHIQLADPSFYQPQRIDLLIG
FT                 AGLFFELLCVGQIQLAPGLPLLQKTHFGWILSGGGHSAPTLSSFIATQSSD
FT                 DINHSTRLDDLVRQFWEVEHIFEPIARATKEELHCEEHFISTHTRLPSGEY
FT                 SVRLPLKQSVESLGDSYLQAKRRLENLERKFVRNPALYAKYSAFMKEYLSL
FT                 NHMSLVPNEDRHKCKYFLPHHCVIKEDSSTTKLRVVFDGSAATTSGRSLND
FT                 LLMSGPTIQAKLFHTLIRFRTFSIALTGDIGKMYRCVRVSMPDTMLQCILW
FT                 RDSLDDDIQIFKLNTVTYGTKPASFLAIRAMHQLAMDESSSYPVGSETILQ
FT                 NFYVDDMISGGNSVEDVLDIMRQTTDLLARGNFQLRKWCSNSLDVLRTVPE
FT                 AERESFLKLDDGSDVTKALGLIWEPHKDCFLFTFAPQIGVGKHTKRSVLST
FT                 IARCYDPMGLIGPTLTRAKIIMQRMWRDKLHWDESLPQSLDSAWTEFCKDF
FT                 ATVGHATFPRYVFQPKARFELHAFCDASLQAYGACIYARSFTDTAAEVHLL
FT                 CSKARVAPLKTLTVPKLELCAAFLLANLLREIRKMDTFDCPIHCWSDSTVV
FT                 LSWLREEPSKFNVFVSNKIAGIQQLTRGMDWRYVPTEMNPADILSKGASPQ
FT                 DLLHSRLWMNGPTFLQGERSCWPERCSPELNLPEIRHRVLLSSERADISLS
FT                 FKHINSFGVMLRIFGYVQKFISRTKTPDLSSDDLRKGSHLLCRIVQRAHLY
FT                 PEYSTLQNGNCVQSSSSIASLSPFIDDVGLIRVGGRLRNSTLGFDARHPII
FT                 LPRDHPLTFAIISHFHQRHHHAGPQSLLGAIRLQFWPIGGLKTVARALRKC
FT                 VICCRSRPRLVKHIMADLPKDRIQDSPAFSVTGIDYCGPFYYKPDGRNRTP
FT                 MKCYISVFICFTTKAVWLELVKDLSTAAFLSALKRFVATRGIPRCIWSDNA
FT                 TNFVGARNELEDLRRLFSSEKHRAEVHNHCLNNGFDWKFIPPRSPHFGGLW
FT                 EAAVKIAKQHFYRSVGSSLFGFDELRTLVCQIQAIINSRPLIPISENPEDL
FT                 GVLTPGHFLIGRPLMEFPEPDVTALNFNRLDRWQQVTSAQQIFWKRWSEEY
FT                 LTLLQQRAKWRTPQPPIQINDVVCIKDENLPPLKWPLARVIEVITGADGAV
FT                 RVAILRTPSGTTRRAVNKLCVLPVKDSVESPGLSTGGS"
XX
SQ   Sequence 5871 BP; 1407 A; 1487 C; 1413 G; 1564 T; 0 other;
     ttttggtgac cccgacgtga tctccgtgag ctgatcgtgt gataatagtg ttaaaacata        60
     tagttaaatc tgtttcaaag ttttaactaa gcatttgtga aatcatagcg aaccaaaagt       120
     cgttgtggcc ggccgtgaca gttctaacgg cccgctattc gttttttttt gcattccctt       180
     tcaccgtctg cttcagcctg cccaacgcac tgtcgagacc ggctgcatat agtgcagtta       240
     tattcttcgt ctcttctatc gtcggttggt tcagccagcg ctcgcgagtg gctacattga       300
     cctgtctctg gtttgttgaa ctcgaaatca gagtaacatt ttcgatcgtg gataattgtt       360
     tgttgttggt catcgctcgt cgcattatcg gtcttcgctt taactgcatg tgccggtgta       420
     gtgcgtacat acatacatac atttttcgtc ttcgctttgt acctcgctgc atctcttacg       480
     tgtttttcgc cgcctttgag agcaataacg ttcgcaacgt tagatcagcc ggcgtgaaaa       540
     gtgaaaaaat agcgtgaaaa gcgggaaata acaaaaatta aaacttcata gttaaaatga       600
     gcaacgacaa tataagtatc gggtccgcct cgggtggcac accctcgact ggcgctccgc       660
     ctggtgaatc tttggccagt gctactagcc ggattgcttt tttgaagctc aaaacaacgg       720
     ctattctcaa cagactgcag ggactcgtca ctcaattgga ttttgaaaag ctgcgccaaa       780
     tggatgaata cgacctgaag ggaatgttgg actcactgac gaaactggaa gataacttta       840
     ttgtggcaca caccagtttg gaggaagtag atttcgaagc aatgtccagt gaaacacctg       900
     tacaattcga ttcgtcgcta ttagcattga ggacggctct tcagcgggag ttgggcaagc       960
     ggtctcagcc cgcgcattgc tcaacgtttc gcataaatcc aaacgaatct caatccctga      1020
     tctacatggc aaatcgatcg cgcctgccac aactgcagct gcccaagttt agtggagagt      1080
     acacggagtg gaccagcttc tactccatgt tcacagcggt catcgatagc gaagctgagc      1140
     ttacttctat cgagaagcta cagcacttgc ggtcctgttt gagcggagtg gccctggaca      1200
     ccatcagttc gttggagatg accgaggata attatataac agctttagat attttaaagg      1260
     ccagattctc taacaagcgt ctcatcttac aggcacacat cagagcggta tttgggctga      1320
     ctcgtggcga ctcatcagtg ggcaaattgc gggcgtttgt ggatgccgcc acttcacatc      1380
     ttcgcgcgtt gcaagcgctt ggatcgaagg aggaaatagc agacgctata atcgtctatg      1440
     caatttggcg gaatttggac agagcaacgc aaatcaaatg ggaagaaacc gcgtctagcc      1500
     aaggtcttcc gtcctgggaa aaattgtcaa ctttcctgga gaatagatgt cgcactcttg      1560
     aaggaattca acacgccatg catggacaag atgatcaggt tggcaaggct gaaaaaaccg      1620
     tgagtacgaa acatagaaag gctttcgtgg catcgagcgc tcccgctccg gtttcttgtg      1680
     ctttgtgtaa tggctcgagc catacaattg caaattgcga gcgctttaag ggtttatcgc      1740
     cggatgagcg ccacaaggaa tcaaggaggt taggcttatg tgtgaattgc ctaagaaagg      1800
     gccatcacgt gaaagattgc agatcaggtc cctgccgtac ctgccgattg aagcaccaca      1860
     cccttttaca ctttggccgt tcctcagaga ccattcaagt tggttccccg aatgaagcct      1920
     cgcaaccaca gccaagccat actgccatgg ttgcgttgtc acccccattg ccgcaagccc      1980
     ttatatccca aagtccgtct gatgctgtgc tattagccac tgtcgtcgtt ctcgtaaaaa      2040
     acagctctgg aactttcgtc ccttgtcgcg cacttttgga ctcgggatct caattgcatt      2100
     tcgttacaag tcgtatagct aatcagctta aacttcgaaa aactaaatcg cacactgcag      2160
     tctctggcat aggcgatgct agcttctcaa cagaaggtat ctcggtggat ctcgttctga      2220
     agtctcggat ttcagagttc accactagca tcacagccgt cgttgcccag aagattacgg      2280
     atcaccaacc tcgctcgtcg attagcatag ctaattggca tatcccttcg catatccagc      2340
     ttgctgaccc ttcgttctac cagccgcagc ggattgatct gctcatcgga gccggactct      2400
     tcttcgagct gctgtgtgtg ggacaaattc agctggcgcc tggattaccc ttgctacaga      2460
     agacccattt tggatggatt ctatctggtg gcgggcattc ggcccccact ctctcgtcgt      2520
     tcatcgcaac ccaatcctcg gatgacatca atcacagcac tcggctcgat gacttggttc      2580
     gtcaattttg ggaagtggag cacatctttg agccgatcgc tagggcaaca aaggaggagc      2640
     ttcattgcga ggagcatttc attagcactc acactcgttt accctccggg gagtactcag      2700
     tccgcttgcc tttaaagcaa agtgtggagt ccttgggcga ttcctatttg caggcaaagc      2760
     ggcgtctgga aaacttggag cgaaaatttg tgcgtaatcc agctctctac gcaaaatatt      2820
     cggctttcat gaaggagtac ctgtccctca atcatatgtc gctggtgcca aacgaagata      2880
     ggcacaagtg caaatatttc ttgccacatc actgcgtcat caaggaggac agctccacca      2940
     caaagctgcg ggtcgtattc gacggctctg cagccaccac atctggtcgt tcgttaaatg      3000
     atctgctcat gtcaggtccc accattcaag ccaaactatt tcacacactc attcgatttc      3060
     gtacattttc cattgctctt acaggtgata tcggtaaaat gtataggtgt gtgcgtgtct      3120
     caatgcctga caccatgctc caatgcatat tatggcggga ctctctcgac gatgatatac      3180
     agatcttcaa gttaaacaca gtcacctatg ggactaagcc ggcatcattt ttagctattc      3240
     gagctatgca tcagctggcc atggatgagt catcttcgta tccagtgggg tcagaaacca      3300
     ttctacagaa tttctacgtg gatgacatga tatctggagg aaattcggtc gaggacgttc      3360
     tggatattat gcgtcaaacc acggaccttc ttgctcgagg caattttcaa ttgcgtaagt      3420
     ggtgctccaa ctctctggat gtgcttcgta cagtcccaga ggccgaaagg gaaagttttc      3480
     tgaagctgga tgatggcagt gatgtaacaa aggcgcttgg gctcatttgg gagccccata      3540
     aggactgctt tttgtttaca tttgctccac aaatcggtgt tggcaagcac actaagcgtt      3600
     cggtattgtc gaccattgca cgctgctatg atcctatggg attgatcgga cctactctga      3660
     ccagagcgaa aatcatcatg cagcgcatgt ggagagacaa actgcattgg gatgagagcc      3720
     ttcctcagtc tttggattcg gcatggactg agttttgcaa ggatttcgcc actgtgggcc      3780
     acgccacatt tcctcgctat gtatttcagc ccaaggctag gtttgaattg catgcctttt      3840
     gtgatgccag cctccaggcc tatggggctt gcatctatgc tcgttcgttt acagatacag      3900
     ccgctgaggt tcacttgctt tgttcgaagg caagggttgc cccactaaaa accctcacgg      3960
     ttcccaagct tgagctatgc gcagcgttcc tattagcaaa tttacttcgc gaaatcagga      4020
     aaatggatac ctttgattgc ccaatccatt gttggtcgga ttcaactgtt gttctgtctt      4080
     ggttgcgaga ggagccatcc aaattcaacg tatttgtatc caacaaaatc gccggaattc      4140
     aacaacttac gaggggcatg gattggcgct atgtgccaac tgagatgaac ccggctgaca      4200
     ttctttcgaa gggagcatca ccgcaggatc tcttgcattc taggttgtgg atgaatggac      4260
     ctaccttttt gcaaggcgaa cgaagttgct ggcctgaacg gtgctcgcca gaactcaacc      4320
     ttccggaaat tcgacaccgg gtattgctgt cgtctgagcg tgccgacatc tcgctttcgt      4380
     ttaagcacat caactcattt ggagtcatgc tgcgcatctt cggctacgtt cagaagttca      4440
     tcagtcggac gaagacaccg gacctctcgt ctgacgacct tcgaaaggga tcccatctgt      4500
     tatgtcgcat cgtccaacgg gcccatctgt atcctgagta cagtactctg cagaatggaa      4560
     actgcgtgca gtcctccagc agtatcgcat cgctttcgcc ctttatagat gacgtcgggc      4620
     taatacgtgt tggtggtcgc ttgcggaact caactctcgg cttcgatgca cgtcacccaa      4680
     tcattttacc tagggatcat ccactgacct tcgccattat ctcacacttt catcagaggc      4740
     atcatcatgc gggtccgcag tcgttgcttg gagcaattcg cttacagttc tggcccatcg      4800
     gcggcctgaa gactgtggct cgtgccttga ggaaatgcgt catctgctgc agatcccgac      4860
     ctcgtcttgt taagcacatc atggctgacc taccaaagga tcgaatacag gattcgcctg      4920
     cattcagtgt cactggtatt gactattgtg gccccttcta ctacaagcca gatggtcgca      4980
     atcgaacgcc catgaaatgc tatattagcg ttttcatctg ttttaccaca aaggcagtct      5040
     ggttagaatt ggtaaaggat ttgtcaactg cagctttctt gagtgccctc aaacgcttcg      5100
     tcgctactcg tggcattccc cgatgcattt ggtcggataa tgccaccaac ttcgtgggcg      5160
     caaggaacga gttggaagac cttcgtcggc tatttagcag cgagaagcat cgtgctgaag      5220
     tccacaatca ctgcctcaac aacggcttcg actggaaatt cataccgcct cgctcgcctc      5280
     atttcggggg cttgtgggag gcagcagtga agatcgccaa acagcacttc tatcgctccg      5340
     tgggatcgtc actctttggc ttcgacgagt tgcggacatt ggtctgccaa atccaggcga      5400
     taataaattc tcgtcctctt attccaattt cagaaaaccc tgaagatctt ggcgtcctta      5460
     caccggggca tttcctgatt ggtcgtccgc tgatggagtt tcccgagcca gacgttacgg      5520
     ctctgaactt taatcgactc gatcgttggc aacaagtcac cagcgctcag cagatttttt      5580
     ggaagcgctg gagtgaggag tatttgactc tgctccaaca acgtgccaaa tggcgcacgc      5640
     cacaacctcc gatccagatc aacgacgtcg tctgcatcaa ggacgaaaat ttgccgccac      5700
     tgaaatggcc attagcacga gtgatcgagg tcatcactgg agccgatggt gccgtgcgag      5760
     ttgccatcct gcggacacca tctggaacca cacgtcgagc tgtcaacaag ctgtgcgtcc      5820
     ttcccgttaa ggattctgtt gaaagccctg gtctttcaac gggtgggagt a               5871
//
ID   BEL-4_DAzt-LTR repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-431
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 750-750 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 431 BP; 132 A; 97 C; 89 G; 113 T; 0 other;
     tgttcggagc agcagctggc agtagatctt aggagtaaag ataagataat ttaagagaaa        60
     atcatttgtt cgcatgctct gtgtgcatac gcacacagtc acactcaggt tcgccgcgcg       120
     tactgcttat atgcagtgcg tcggttagct tgggcggcac tctttcggtc aatttcgtcg       180
     ttgaacgcag catcgcgtat tactatcacc taccggccgt taaaattgtt aaatcggtct       240
     gcaactgctt tgtcaaattc ctgcctatac acatacaatt tgtacactaa aacacacaaa       300
     gtttacggcc acggccttta atattgaaaa tactcacaga aaataaacgc aaagcctaaa       360
     acccaaaaac ggagtataaa ttttgtaaat gtggagtcag agttgccgaa aaagctcggc       420
     agcttccaac a                                                            431
//
ID   BEL-4_DBi-I repbase;    DNA;    INV; 5882 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5882
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 817-817 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           374..5575
FT                 /product="BEL-4_DBi-I_1p"
FT                 /translation="MGKNESNGSDLAQQSSAPLAVVEPFADMYAMQMDLSS
FT                 RLTQLIKNAKKDGQIKKTKSYYEFRLNKLNELSKQFYANHQALILQQCPRS
FT                 HPYFADAVEDNFEQAYSHIYCSFADEYETKFPVPIQVSGDQSINNTLVPSP
FT                 VSTIQLPKLPVPHFSGNFADWPSFYDSFTQLIHENQSLSNIQKFHFLKQAL
FT                 PHGRDQDINHMALTETNYAVAWNLVVKRYNNPRLQFMYNMNALYGIEPLSK
FT                 EIAVDLRNLLNLANVCISEFRRLHIAIDSCDHWLVHHLLTKLPISTTQAWE
FT                 HSLGNNVEIPTFTKLEVFLHNRLVSIDLIESRKPAVPVRSSIQSTNHRQTT
FT                 RPSGNSTVRGHSFHSTLESGSIRCSLCQQNHVLRRCPDFLAKDCFARKVIV
FT                 DRSKACINCLSASHSLSQCSSNRNCSQCGQRHHTLLHFPNAQQSPSLTPGV
FT                 SRQHTSDSGRSADAVQNAPSTQLFSAVASHLNSTTLLATALVRIVNNSTGQ
FT                 SALVRALIDHGSEGTLITENIVQALRLKRHPVRAEITGIGNTSHNQCRHST
FT                 DFTIISCSGSDFNAYVSSAFILRSLTGHLPKQNVNIKSCKHLQGLSFADPN
FT                 FIKSGRIDLLIGVDIIPQLMLPDIRKGTVAEPIAQNTQLGWIVFGPAEAAQ
FT                 TTSISIRCNLANLNNMVQRFFELDQVSTTRQLNAEERWCEDHFQQTHIRQP
FT                 NGKYLVRLPLKTLFDPTQVIGRSRQIALNRFHALERKLNHRPDFSQQYVST
FT                 IQEYFDLKQIKEVKGSEEEHTRINAQRQLSISACTVPHHAVIKDDSLTTKM
FT                 RVVYDASCKTSNGRSLNDILCTGPALQNDLGGVILNWRLHRYVFVADITKM
FT                 YRCIDMHEEDAQYQRIFWRDEKGLIKEYFLTTVTFGTASAPFTAIRVIHQI
FT                 ASDERERYPLAEHVLKKEIYVDDVQTGHETIDGALKIRNDVIAALQSAGME
FT                 LKKWASNHPDILESIPTTDLSNSSIFEIDNKDSIKTLGLYWHPNKDGFGFN
FT                 LKFSLNPIFTKRSILSTVARLFDPLGYLAPVIIAAKILLKEVWSFRIERKD
FT                 EPPASLDWDDPLPDQLAERWRQLIQELPDIEEIHIPRWLGFDLRHVSTLQL
FT                 HMFCDGSSMAYAACAYLRASCTDGSVQVNLLAARSRVTPVKPLTIPRVELS
FT                 GALLCTQLADWIVNQLQASHHTISVHYWSDAMIVLYWISGDPRRWKTFVSN
FT                 RIGAILEASSPSQWRHVLTQENPADCATRGLTPSQLKHHTLWWNGPHWLQL
FT                 SEEHWPVNPVQSPKSELISGEQSLKHIGAHICIEVQPFIESYSSYNKLLFV
FT                 TAYVKRFIYNTRHKKADRLTGPIQVSEFQQALFALVRMVQQEVYSEELSRL
FT                 RSNKFLSKHNKLSQLSPFLDDEGLMRVKGRLKNALQLSMSQRTPIILPKAH
FT                 HLTILVIRNAHHNTLHGGVQLTLATIHQVFWIVNGKQAVKRILRQCVTCFK
FT                 HRPSPSSQLMGDLPAHRVNPPKRAFEATGVDYTGAIEIKSSRFRGHTCYKA
FT                 YIAVFICLASKAIHLEAVTGMSAQHFLWALQRFIGRRGFCQHLYSDCGTNF
FT                 ISSDKSLKLWTNEFYKGIEETVVPELTRRNIQWHFNPPHSPNFGGLWESNV
FT                 KAVKTHLYRSFNGIRMTYEQLSTILVQIEACLNSRPLCPLTSDLDDLQALT
FT                 PAHFLIGDSMMSLPEPSLKDSSLNTEFLNGQRMFRLFWRKWSADWLPCRRA
FT                 PSGATKLTIFSVTT"
XX
SQ   Sequence 5882 BP; 1685 A; 1452 C; 1245 G; 1499 T; 1 other;
     ttttggtggc ccatgagggg aacatacact cataacttca tcagcttcca atatttgtaa        60
     acatacttca atctttgtgc ttacttgtgt gcaaatctac tattaattta aaccagcaaa       120
     gttacgcaac ctttgccacg tacatcccat aacggagcct cgaataacgg aggaatcaag       180
     aagtcgagga gaatagcgga ttcaacccat gcctattgcc atctcatgcg acacactagt       240
     ctcgtgaagt ttgccgtccc cttccttcaa agcttgatcg caacacgagc ggaacgactg       300
     aaaaaggtga gtgtgtttgt gagagtattt gtgcgtggtt tttcaaagca gagtgcaata       360
     ggaaaacatt aaaatgggta aaaatgaaag taatggtagt gatttggcac aacagagctc       420
     ggcacctttg gctgtggtcg agccttttgc agacatgtac gcaatgcaga tggacttatc       480
     ttccaggttg acccaactaa ttaaaaatgc taagaaggac ggtcaaataa agaaaactaa       540
     atcctactat gagtttcgcc tcaacaagct caacgagctt tcgaaacaat tttacgcaaa       600
     tcatcaagcg ctcattttac agcaatgtcc acgatcgcat ccatattttg cggatgctgt       660
     tgaagacaat tttgagcaag catacagcca catttattgt tctttcgccg atgaatacga       720
     aaccaagttt ccggttccaa tacaggtatc aggtgatcaa tccataaaca acacccttgt       780
     gcccagtcct gtttccacaa ttcagctgcc caaattgccc gtaccccact tttcaggaaa       840
     ttttgcagat tggccatctt tttatgacag ctttacgcag ctaatacatg aaaatcaatc       900
     tctttcaaac attcaaaaat ttcatttctt gaagcaagca ctaccgcacg gacgagacca       960
     ggatataaac catatggcat taacagaaac caactatgca gtggcatgga accttgtggt      1020
     aaaacgatac aacaaccctc gactgcagtt catgtacaat atgaatgcac tgtacggaat      1080
     cgagccactg tccaaggaga tcgcggtgga ccttaggaat ttgttaaact tggcaaatgt      1140
     atgtatwagt gaattccgac gactacacat tgccattgat tcctgtgatc attggttggt      1200
     acatcactta ctcacaaagc tgcctatcag cacaacacag gcctgggaac attccctggg      1260
     caacaacgtg gaaatcccca ccttcacaaa gctggaggtg tttctgcaca atcgattggt      1320
     cagcatcgac ctaattgaga gtaggaaacc agccgttcca gttagatcat ctatacaatc      1380
     gaccaaccat cgccagacaa ccagaccatc gggaaactcc actgttaggg gacacagctt      1440
     ccacagtact cttgagtctg gatccatcag gtgctcgctc tgccaacaga atcacgttct      1500
     aagacggtgc ccggacttcc ttgccaagga ttgtttcgcg cgaaaggtta tagtcgaccg      1560
     ctcgaaggca tgcatcaatt gccttagtgc ttcccattct ctcagtcaat gcagcagcaa      1620
     ccgaaactgc tcgcaatgtg gtcaacggca ccacactttg ttacatttcc cgaatgctca      1680
     acaaagtcct tcattgactc ctggagtatc ccgacagcat acttcagact ctggtcggag      1740
     cgcagacgcg gtacaaaatg caccatcaac gcaactcttc agcgcagttg cctcccatct      1800
     gaactcaacg acccttcttg ctactgcact ggttcggatc gtaaataact ccactgggca      1860
     gtcagcttta gttcgagctc tcatcgacca tggctcggaa ggcaccctca tcacggaaaa      1920
     catcgttcaa gcgcttagac tcaaacggca tcctgttcga gctgagatca cgggaattgg      1980
     taatacgtcg cataatcagt gcaggcacag caccgacttc accataatct catgttcagg      2040
     atcggatttt aacgcctacg tatcctcagc cttcatcctt cggtcactaa caggtcattt      2100
     accaaaacaa aatgtaaaca ttaagtcctg taaacatctc caagggttat cctttgcaga      2160
     tcctaatttc atcaagtcgg gtcgcattga cctacttatc ggtgtcgaca ttatcccgca      2220
     attaatgctt ccggacatac gcaaagggac ggttgcagaa ccaattgcac aaaacacaca      2280
     gctgggctgg atagtttttg gaccagctga agcagcccag acgacatcaa tctccatccg      2340
     ttgtaatttg gcaaacctaa acaacatggt acagaggttt ttcgaattgg atcaggtctc      2400
     cacaacaaga caactcaacg cagaggaaag atggtgtgaa gaccattttc aacaaactca      2460
     tatccgtcag ccgaatggga aatatctggt tcgtttgcct ttaaaaacgt tgtttgaccc      2520
     cacacaggtg atcggccggt caaggcaaat cgcattaaac cgtttccacg ccctggaaag      2580
     gaaacttaat catcggccag atttcagtca acagtatgtc agcactattc aagagtactt      2640
     tgatctcaag cagataaaag aggtaaaagg tagtgaggaa gaacacacta ggatcaacgc      2700
     tcaaaggcaa ctctcaatct ctgcgtgcac cgttccacat catgctgtga tcaaagacga      2760
     cagtttaact acaaagatgc gcgtcgtata cgacgcttcg tgcaaaacgt ctaacgggag      2820
     gtctttgaat gatattttat gcacgggtcc cgccctacaa aacgatcttg gaggagttat      2880
     actcaactgg cgtctccatc ggtatgtctt cgtggccgat ataacgaaaa tgtatcgctg      2940
     catagatatg catgaagaag atgcccagta tcagcgaatt ttctggcgcg atgaaaaggg      3000
     actcatcaag gaatattttt tgactacagt aacgtttggc actgcctcgg cacccttcac      3060
     ggcgattcga gtcatacatc agattgcgtc cgacgagcgc gaacgctatc ctctggccga      3120
     gcatgtcctt aaaaaggaaa tctatgtgga cgatgttcaa accggacacg agaccatcga      3180
     cggagctcta aaaattcgca atgatgtcat cgcagctctg caatcagcag gcatggagct      3240
     caagaagtgg gcatccaacc atccagatat cttagaaagc atcccaacta cagatctctc      3300
     taacagtagc atttttgaga tagacaataa ggactccatt aaaactttag ggttgtattg      3360
     gcatccaaac aaagatggtt ttggttttaa tcttaagttt tctctcaatc ctatattcac      3420
     caaacgttct atactatcca cagtagcacg cttattcgat ccgttgggat acctggcacc      3480
     agtgatcatc gctgcgaaaa tcctgttgaa ggaagtttgg agttttcgta tcgagcgcaa      3540
     ggatgagccc cccgcatcat tagattggga cgacccattg ccagatcaac tcgccgagcg      3600
     gtggcgacag ctcattcaag agctccccga cattgaagag atccacatcc ctcggtggtt      3660
     aggcttcgat ttaaggcatg tctcgacgtt gcaactacac atgttttgtg atggatcatc      3720
     catggcgtat gcagcatgcg cttatcttcg agctagttgt acggatggtt ccgtgcaggt      3780
     taacttatta gccgcccgca gtcgagtcac acctgttaag ccgctaacaa ttccgagagt      3840
     tgagttatcc ggagccctgc tgtgtacaca attagccgat tggattgtca atcaacttca      3900
     agcatcacat cacaccatat ccgtacacta ctggtcggat gcaatgatag tgctgtattg      3960
     gatcagcggt gaccctaggc gttggaagac atttgtgtcg aatagaattg gagcaatcct      4020
     ggaggcaagc tcgccatcgc agtggagaca tgttcttacg caagaaaacc cagcagattg      4080
     tgctacacgc ggactcaccc cttcccagct gaaacaccac acgctttggt ggaacggacc      4140
     acattggctg cagctttcag aggagcattg gccagtcaat ccagttcagt ccccaaaatc      4200
     agaacttatt tcaggagagc aatccttaaa gcacatcgga gcccacattt gtatagaagt      4260
     gcaaccattt atcgaatcat attcctccta taataaactc ttattcgtta cagcctacgt      4320
     caaacgattc atttataata ctcgtcacaa aaaagcggat agactcaccg gccctattca      4380
     ggtatctgaa tttcaacagg ctttgttcgc actggtgcgg atggttcaac aagaagtcta      4440
     ttcggaagaa ttatcaagac tacgatccaa caaatttcta tccaaacaca acaaactcag      4500
     ccagctatca ccgtttctcg acgatgaggg gctcatgaga gttaaaggca gacttaagaa      4560
     tgctttgcag ctctccatgt ctcaacgcac accaataatc cttccaaagg cccaccacct      4620
     gacgattttg gttataagga acgctcatca caacacctta catggcggtg tgcaactaac      4680
     tttagctaca attcatcaag ttttctggat cgtcaacggt aaacaggcag taaaaaggat      4740
     tctgcgacag tgcgtaacct gtttcaaaca ccggccgtca ccatcaagcc aactgatggg      4800
     agatttacca gcgcaccgtg tcaatccgcc caaacgggcg ttcgaagcaa ctggagttga      4860
     ttacactggt gcgattgaga taaagtcatc cagattcaga ggtcacactt gctataaagc      4920
     atacattgca gttttcattt gcttagcgag caaagcgatt catttggaag cagtcacggg      4980
     aatgtcggca cagcattttc tgtgggcgct gcagcgcttt atcggacgta ggggtttttg      5040
     tcaacatcta tacagcgact gtggaaccaa ctttatctca tccgacaagt ctctaaagct      5100
     gtggaccaat gaattctata aaggaattga agagacagta gttcctgaac ttactcgtcg      5160
     aaacattcag tggcatttca atcctccaca tagtccaaac tttggaggac tctgggaatc      5220
     caacgtaaaa gctgttaaaa cccatcttta tcgatcgttt aatgggattc gaatgacgta      5280
     cgagcagctg tctaccattc ttgtccagat agaagcgtgc ttgaactctc ggccattatg      5340
     ccccttaacg tctgacttag atgatttgca agctctcacc cctgcacatt ttttaatcgg      5400
     ggattcgatg atgtcactcc ctgagcctag tcttaaggat tcttcattaa acacagagtt      5460
     cctgaatggt caaaggatgt ttcgcctctt ttggagaaaa tggagtgcag attggcttcc      5520
     ctgcaggcgc gccccaagtg gcgccacgaa actgacaatc ttcagcgtaa cgacatgatc      5580
     atcatcaagg atgatcgaac tggtccttct gactggaaat tagggcgaat catcgactta      5640
     catcctgggg ccgatgggct cgttcgagta gctacaatta agacctcaac gggtatttac      5700
     aagaggtctg tgtcaaagat ttgtcgtttg cccttgccaa gatttactga agagtctagc      5760
     ccaagtacac aacccatgca cctttgaata tacccgcatt cactccataa cacacttcaa      5820
     ccttttcaga gtttaagcat ggtctaaggc tttgaatact gggtccagta ttgggggcgg      5880
     ca                                                                     5882
//
ID   BEL-4_DBi-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-350
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 818-818 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 350 BP; 111 A; 61 C; 81 G; 97 T; 0 other;
     tgaacgggtg tttctgtcga ttaggagaag ctggacagct gttttctggc gactctgaga        60
     agcagtggac aacagcagtt ttaacagcga atgttagatt tctgctgcta atgttagcag       120
     cacgacacga cgaggaagac ataaggagaa gctggtcgcg tttataaccg agcttttata       180
     tttcataatt tgtaaatcaa aattagcatt aagtcaaaga ttgaaagtat acaaatgaat       240
     acaactggtg aagttcaaca tatttccgag tttttattac aaagtgtgtg aaagaccccc       300
     agagtagact tctgctcaac tttgacgatc gggtgcgaat cgtcacaaca                  350
//
ID   BEL-4_DBp-I repbase;    DNA;    INV; 5335 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.05, Created)
DT   14-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DBp_;
KW   BEL-4_DBp-LTR; BEL-4_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5335
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 630-630 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4377-4964] - Integrase core
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..5306
FT                 /product="BEL-4_DBp-I_1p"
FT                 /translation="MNAIMHRTIQQRGACKGQITRTLNSAVEFSQRCENVE
FT                 TLQFKLERLVATFNHFMELSDELVEFHLEEGYEDPGLDIPEYEDKFYAAHA
FT                 IFSNAIKDMGGQDHGQDQSNILLSSTVERLFEGQNNLLEKIHTSSGTADLR
FT                 FEKIRIPTFSGKYEDWSQFSDLFLSSVNSNEKLSKCQKFHYLKSYLEGEAL
FT                 SLIKHIAVCNDNYQDAWEKLENRYNKRSLIARSFVQNFLSLPTANNSNIAE
FT                 LRKVIDSADECIRGLHALNCDSRDVWLIHILLSKLGSEIKQAWANCSISAT
FT                 EDVTIDDLFAFLFAHCDTLESCQDLPAMQPSRPAQSRRRQAAFHASGSTQS
FT                 SRECIYCQGQHSIYSCNEFKALDVVSRRTFAKDTKLCFNCLSRSHQVRDCN
FT                 SSNTCRQCNAKHHTLVHPIEARSVPVAPAHSTAADTNTAAVSHHILERANN
FT                 PALLPTVVANVIDTWGNETSCRLLLDTGSTITMVSESFIQRIGIPRTHARI
FT                 SVVGLGANPAGVSRGRASFTLLSRTTTASLEVSCLIMSSLTSTIPAQQVKS
FT                 NATIWTKIRSLPLADPTFGSPGKIDVILGADQLWNLYTGHRREFGIEYPIA
FT                 LHTNFGWVITGSYTDGNKASTHAQVHHAYEDLDSLVRSFMDMEQVHPSKTT
FT                 IDASDPAEQHFLKTHARREDGVYIVQYPFKEPRTPIGSTLPQALNRFAALE
FT                 RKFRRFPALKQQYVDFMDDYLNRGHMELIPAAAGGEDPARYNYLAHHAVFK
FT                 PDSTTTRCRVVFDGSGKDSTGHSLNSRLHIGPPIQRDLIGVCLRFRQHRYV
FT                 FCADIEKMFRGILVSDEHTQYQRIVWRKDENATLDHYRLLTVTYGLASSPF
FT                 IAVRVLKQLSNDYAELYPTAAVVLNRDAYVDDIPTGCDNIKDLIALKDELI
FT                 LLLSEAQFKLRKWSSNCYALLKSLPKEICEYPPEDLEEDRSFRFVKVLGLC
FT                 WEPKPDYIFFKLETPAFTTALTKRILLSELAKIYDPLGLLSPTVVFLKILF
FT                 QDSWLSSVDWNEVLPQQLCTRWQQFVSEMHLLETCRVPRYISAPHQEMELH
FT                 GFADASSQAYAAVIYSRVEVNNGYAVKLIMAKTRVAPIKPISIPRLELNAA
FT                 HLLSKLIYLVKQSLTVPISRINCWSDSEIVLHWLSSPPRTWNTYVCNRTAE
FT                 ILEVCPRSCWQHIRSGDNPADCASRGVLPKDLVDHQIWWNGPPWLSQSRSA
FT                 WPPVKAKFVLSTEEEACLEMKAETKVNLHISDDGNSLSCMINKSSSWSRLL
FT                 RIVSYCLRFVHRLRERNRLSPFLSAWELQYARAKIFTHAQEEFFNVEYKQL
FT                 TTGQPLSKKSKLIRYTPFLDEQRVMRVGGRIDNSIATYDAKHPILLPKESP
FT                 IAGLLVRYQHAALLHAGVEYTFHSLRQRYWILGARNLVRKTVFNCRTCFLQ
FT                 RRHTSSQLMADLPEFRVQPARCFLHTGLDYAGPVSIKTSTGRTPRFGKAWF
FT                 AIFVCLSTKAIHIELVSDLTTSAFIAAFKRFWSRRGPISDLYSDNGTTFHG
FT                 AKRDLAEMQRMAIAQSQDEEISSFMASHEINWHFIPPSAPHFGGIWETGVR
FT                 SIKLHLKRVIGSSALTFEEYSTLLIQIEGLLNSRPLCAPSDHSLNPLTPSH
FT                 FLTGQPLTSVPEPSFLDVNINRLQRWRQLQAKVQGFWKRWNLEYLSTLQPR
FT                 TKWHQDAPNVAVDTLVVLKEPNQPPSKWMLGRVTEVHPGQDQRVRVVTVKT
FT                 AKGIYKRPITKIAVLPLN"
XX
SQ   Sequence 5335 BP; 1452 A; 1252 C; 1181 G; 1449 T; 1 other;
     taacaaattt tggtccgttc gagccggata cccgcgttta tttgtgcatt tacttttgtg        60
     aacattagag acaaatttac cgctttttcg tcatgaacgc gataatgcat agaacgattc       120
     aacaacgtgg tgcctgcaag gggcaaataa cgcgcaccct caacagtgct gtggagtttt       180
     cacaaagatg tgagaatgtg gaaacattgc aattcaagct ggagcgtttg gtcgccactt       240
     tcaaccactt tatggagctc tcagatgagt tagtggaatt tcacttggag gagggatatg       300
     aagaccctgg attggacata cccgaatacg aagacaagtt ctacgccgcg catgctattt       360
     ttagtaacgc catcaaggac atgggaggtc aggatcatgg acaggaccag tcgaacattc       420
     tactttcaag tacagtggaa cgcctatttg agggacaaaa caaccttttg gagaaaattc       480
     atacttcatc gggaactgct gatttaaggt ttgagaaaat tcggattccc acattttctg       540
     gtaaatatga ggattggagc cagtttagtg atctgttctt aagctcagta aatagtaacg       600
     aaaagctctc caagtgccaa aagtttcatt atctcaaatc atatctggag ggagaagcac       660
     tgtccctaat taaacatatt gccgtctgta atgataatta ccaagacgca tgggaaaaat       720
     tagaaaatcg ttataataaa aggtcgctca tcgctcgatc gtttgttcag aattttttat       780
     cgttgccaac cgctaacaat tcgaatattg cagaattacg caaggtaatt gactcggccg       840
     acgaatgcat tcgaggctta catgcgctga actgtgacag ccgcgatgta tggctcattc       900
     atattttgct gtcaaagtta ggttcagaaa ttaaacaagc ttgggccaac tgcagtatat       960
     cggccactga agacgtcacc atagatgatc tgttcgcctt tcttttcgct cattgtgata      1020
     ctttggagtc ttgtcaggat ttacccgcaa tgcaaccctc aagaccagcc cagagtagac      1080
     gccgccaagc cgcctttcat gccagtggat caactcagtc gtctcgcgaa tgtatatatt      1140
     gccaaggaca gcattctata tattcatgca atgaattcaa ggcactggat gtagtcagcc      1200
     gccgcacctt cgccaaggat acaaaattat gcttcaactg cttgagtcga tcgcatcaag      1260
     tcagggattg taattcatcg aacacttgcc gtcagtgcaa cgctaagcat cacacgttag      1320
     tacacccgat tgaagcaaga tcggttcctg tggcacctgc gcactcgact gccgctgata      1380
     cgaatactgc cgctgttagc catcatattt tggagagggc caacaatcca gccctactgc      1440
     caactgttgt cgccaatgta attgacacat ggggaaacga gacctcatgt aggttattgc      1500
     tcgatactgg atcaacaata accatggtat ctgagtcstt tatccaaagg atcggaattc      1560
     ctcgcacgca tgcccgcatt tcggtagttg gtttaggtgc taacccggct ggtgttagcc      1620
     gaggtcgcgc tagcttcacc ttactctcaa gaaccacgac tgcatcattg gaagtctctt      1680
     gtctaattat gagttctcta acttctacga ttccagctca gcaggtcaaa tcaaatgcaa      1740
     ctatttggac caagattcgc agcctaccgc tagctgaccc gacgtttgga tctccgggca      1800
     aaatcgacgt tatcttaggc gctgatcagc tgtggaactt atatactgga catcgccgag      1860
     agtttggtat cgaatacccc atcgcactgc atactaattt tggttgggtt attacaggca      1920
     gctacactga tggtaacaaa gcatctacgc acgcacaagt tcatcacgct tatgaagatt      1980
     tggattcctt agttcgctca tttatggaca tggaacaagt gcatccgagt aaaacaacga      2040
     tagacgccag tgatcccgcc gaacaacatt ttctgaaaac acatgctcgt agagaagatg      2100
     gtgtttatat tgttcaatac ccattcaagg agccccgcac gccaattggc tccactttgc      2160
     cacaggcttt aaaccgcttc gccgctttgg aaaggaaatt tagaagattc cccgcactca      2220
     aacaacaata tgtggatttc atggatgatt atttaaatcg aggacatatg gaattgattc      2280
     cggctgctgc aggcggtgag gatcccgcac gctacaacta tttggcacac catgcagttt      2340
     ttaagccaga tagtactacc acacgttgcc gagtggtatt tgacggctct ggaaaggatt      2400
     ccacgggtca ttctcttaat tcgcgactgc atataggacc gcctattcaa agggacttaa      2460
     ttggagtatg ccttcgattt cgtcagcatc gttatgtatt ttgtgcagac atcgagaaga      2520
     tgtttagagg cattttggtg tcggacgaac atacacagta ccaacgcata gtttggagga      2580
     aggatgaaaa cgctacgctg gatcattatc gactgttgac agtaacatat ggattagctt      2640
     catcgccgtt tattgcagtt cgagttctta aacagctctc gaatgactat gccgaattgt      2700
     atcccaccgc tgctgtcgtg ctcaacagag acgcgtacgt tgatgatatt cctactggat      2760
     gcgacaacat caaggatctc attgcactca aagatgaatt gattctgctt cttagcgaag      2820
     ctcaattcaa attgcgaaag tggagctcaa actgttacgc ccttttaaag tcgttgccaa      2880
     aggagatttg tgagtatcca ccagaggatt tagaggaaga ccgctcattt cgatttgtta      2940
     aagtcctggg attgtgttgg gaaccaaaac cggactatat tttcttcaaa ttagaaaccc      3000
     ccgcatttac aactgctctt actaaacgca tattgctttc agaactagcc aagatctacg      3060
     acccgctggg tttgctttcg ccaactgttg tttttctgaa gatcctattt caagatagtt      3120
     ggctaagttc tgtcgattgg aatgaagtac taccgcagca attatgtaca cgatggcaac      3180
     agtttgtatc ggaaatgcat ttattggaaa cttgtcgagt tcctcgctac atatctgcac      3240
     cacatcaaga aatggaactg cacggatttg ctgatgcatc atctcaagcg tatgctgccg      3300
     tcatctatag ccgcgtcgaa gtcaacaatg gatatgctgt caaactgatt atggctaaaa      3360
     ctcgcgtagc ccctattaag cctatctcta ttccgcgact agagttaaac gcagctcatt      3420
     tactctctaa actgatttat ctggtcaagc aatcattaac tgttcctatt tccagaatca      3480
     attgttggtc agactctgaa atagtcctgc attggctatc ttctccgcct aggacttgga      3540
     acacctatgt ttgcaaccgc actgctgaaa ttctagaggt ttgcccacgc agctgctggc      3600
     aacatattcg aagtggtgat aatcccgcag actgcgcatc gcgaggagta ctgccaaagg      3660
     acctcgtgga tcatcaaata tggtggaatg gaccaccttg gctatctcag tcacgttcag      3720
     cttggccacc tgttaaagct aagtttgttc tgtcgacaga agaagaggcc tgcctagaga      3780
     tgaaggctga aacgaaagtt aatctacaca tttccgacga cggaaattcg ctatcttgta      3840
     tgatcaacaa atcctcctca tggtcccgtt tattaaggat agtcagctac tgccttcgct      3900
     tcgttcatcg tcttcgtgag aggaatcgac tttcaccatt cctatcggcg tgggagctac      3960
     aatatgcacg agctaagatc tttacgcacg ctcaagagga gttcttcaac gtggagtaca      4020
     agcagttaac taccggacag ccattgtcga agaaatcgaa gttgatccgc tacacaccct      4080
     ttttagacga gcagagagta atgcgtgttg gtggtcgcat cgataattct atagctactt      4140
     atgacgcaaa gcatcccatt ctccttccta aggaatctcc aatagctggt ctgctagttc      4200
     gctatcaaca tgctgcattg ttacacgctg gagtcgaata cacgtttcat agtctacgcc      4260
     aaaggtattg gattctagga gctcggaacc tcgtccgcaa aactgtattc aattgcagaa      4320
     cttgctttct gcagcgaaga cacacgagtt ctcaacttat ggctgattta ccggagtttc      4380
     gagttcaacc cgcccgttgt ttcctgcaca ctggattgga ttatgctgga cctgtgtcaa      4440
     tcaaaacatc gacaggccgg acaccaagat ttggcaaagc ttggtttgcg atctttgtct      4500
     gcctatctac aaaagcgatt cacatagaat tggtcagcga tttgacgaca tccgccttta      4560
     tagccgcttt caaacgcttt tggtctcgac gtggacctat atcggattta tactcggaca      4620
     atggaacgac tttccatgga gccaaaagag atttagctga aatgcaacga atggcaatag      4680
     ctcaaagtca agatgaagaa atttcaagct tcatggccag ccacgagatt aattggcatt      4740
     tcattccgcc atctgctccc catttcggag gcatttggga gactggtgtg agatccataa      4800
     agctgcactt aaaacgagtc attggcagca gtgccttgac attcgaggag tattcgaccc      4860
     tgttaattca gattgaaggg cttctgaact ctcgcccttt atgcgcacct agcgatcaca      4920
     gtcttaaccc gctaactcct tctcattttc taacaggtca gcctctcact tcggtaccag      4980
     aaccatcttt cctggatgta aacatcaaca gactgcagcg ctggagacaa ctacaggcca      5040
     aggttcaagg tttctggaaa cgttggaatc tcgagtatct cagcacgctt caacctcgca      5100
     cgaaatggca tcaagatgct ccaaatgttg ccgtggacac actggttgtg ctgaaggagc      5160
     ccaatcaacc gccaagcaag tggatgctag gacgagtcac cgaagttcat cctggccagg      5220
     atcagagggt ccgggtggtc accgttaaaa ccgccaaggg aatctacaag cgccctatta      5280
     cgaaaattgc tgtgcttcct ttgaactgaa ccgtcgttca ggggggccgg tatgt           5335
//
ID   BEL-4_DBp-LTR repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.05, Created)
DT   14-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DBp_;
KW   BEL-4_DBp-I; BEL-4_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-385
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 631-631 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 385 BP; 112 A; 85 C; 56 G; 132 T; 0 other;
     tgggaaatag ttcgtcttta ttttgcattt aaatagtatt acatttgctt ctttactttt        60
     ggttaattac ctattaccta tttctaccta ttacctatag tacctatttt tgcgcacatc       120
     attgtcttgt ttaccatttg ggagctttaa gctcacacgc atagccgaaa ttgcagtgca       180
     atgcgttagt attagaacat cacgcgatcg tttttcagtt ctttttctgc acgttttgca       240
     agccggccgc attctcttgt tgacattaac cgcaaccgct cgctgatagc aaccccgctt       300
     aaaagcattg taaacccgct aaatagcgaa aataaatgca taaaactata ataaaaacca       360
     taatacagtc cactattcat aaaca                                             385
//
ID   BEL-4_DEl-I repbase;    DNA;    INV; 5801 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DEl_;
KW   BEL-4_DEl-LTR; BEL-4_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5801
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 506-506 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4833-5417] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           483..5801
FT                 /product="BEL-4_DEl-I_1p"
FT                 /translation="MVNPGDAIQPQNDAPSDIEFYRAKVRSVLRQLNAMKD
FT                 YLTAGATEQFDESDVLARLEWVNSMNLEFDSAQTSLEKLDFSEISKDTRFE
FT                 FSAILMDLKAKLNRALAALRKLHLPGSTAANSTSFDIINNADLSFRFRKPR
FT                 LPNLEIARFQGSYSEWPDFIATFTTVIGNDDELSDIEKLQYLRSSLGGVAL
FT                 ETIRSLEPSNENYKKALNLLINRFDNKVLHFQAHVQAIFGLKGVEKGSAKG
FT                 LRELSDWMNSHLRAIRTLATTQQILDGFLIHIVTHKLDQRTREKWEDDLSI
FT                 SELSTWDAMESFLEKRCRMMENLDQAVVIQTPHHQVGKSMHRYNPSVLITS
FT                 ATNSNHPICLFCDARDHYLPKCSRFLSLSPNLRYREAKKMHLCLNCLRKGH
FT                 SLQQCKSTHCKHCRMKHHSLLHIIPESSIPSTSVSSPSSDPSISSQPLPST
FT                 SSSLVSCSSPLSQPNHHLTHSPPQTLNTMPMNYVLLPTAIIYVKNRVGAFM
FT                 PCRAILDSASQLNFITTRLASQLNLKLRQSHTLISGIGESSMNSDKAVDIL
FT                 AQSRDASYRASFAAVVTHSITDYQPNFNINTTGWRMPQNISLADPHFNQSQ
FT                 RIDLLIGAGLFFEIIAKGKINLDSTLPTLQNTKLGWIVSGGMSSMLNRKSV
FT                 LAAIVKDPADHSDDDTLAAVVKRFWEIEDISSEKPSMLAEDLRCEQHFKEN
FT                 CIRLENGQYSVRLLSTLGFESLGDSYCLARRRFKSLESKLNKNPNLKEQYS
FT                 AFLQEYLNLGHMSLALRDPAVPQFFLPHHSVQKLESTTTKLRVVFDGSAKT
FT                 TSGIALNDLLLAGPTIQQKIFNILLRFRFFKVALCGDICKMYRCVRVSYPD
FT                 DFLQCIIWRENSTDKLSVYKLNTVTYGTKSAAFLAIRAMHQLSYDEEESFP
FT                 VGAKIVRRDFYVDDLISGGDSVEEVKEIRHQVKELLARGHFPIRKWCSNEA
FT                 SALEGESDRDKEQLIKFHDGSAIAKALGLVWDPSSDNLLFNFSQILSSQRA
FT                 TKRIVLSTIAKFYDPLGLIAPIVTKSKIFLQKLWSTNMDWDDTLPEPLLSS
FT                 WGELTSQLSIVQNLKFPRFVMQSQASVEMHGFCDASTAAYGACLYLRSEAN
FT                 GNAEAHLLCAKSRVAPLKALTIPRLELSAACLLAELIVNVKETIGFDCTFH
FT                 CWSDSSIVLAWIRQPPREFNVFVSNRIAKIQEMTKGMAWHHVPTDLNPADV
FT                 VSRGCTPKELLEHSLWANGPPFLLKGASNWPSLLDAVKNLPERRSTALIGT
FT                 VGTDISINCKFLNSFDKLQRVFAYIYRFISNCRAKSLPSTIYLTVDEISFG
FT                 TVLLLRSIQQVHIAVEYEVLSQGKPCPPKSKLISLRPILSSEGLLRVGGRL
FT                 QNASLDYEAKHPILLPKDHPVTRAIIVYYHEKYFHAGPQALLAALRQRYWP
FT                 LGGRKFVASVINKCVRCFRMKPVAWEHVMGSLPADRVQPNPAFHTTGVDYC
FT                 GPFYHKSEARNKAPHKCYIAVFVCFSTKAAHLEVVQDLTTDSFIAALRRFI
FT                 SLRGSPRTIWSDNATNFVGAKRELAELKELFLSEPHTASITSSCLANGIDW
FT                 KFIPPRAPHFGGLWEAAVKSAKFHFYRVVGAAILALDELRTLAYEISAILN
FT                 SRPLCPISENAENFEVLTPAHFLKGSSYTRFPEPDVTHLREGRLSSWQRIT
FT                 QMQQHFWKRWSREYLSLLQERSKWRIKTSNIQIGRVVLLQEDNLPPMKWQL
FT                 GCIHEVIPGKDGVVRVAVVRTATGLTKRAVTKLAALPIESHLVGTVPLPTG
FT                 GV"
XX
SQ   Sequence 5801 BP; 1602 A; 1309 C; 1282 G; 1607 T; 1 other;
     ttttggtgac cccgacgtga tattcgttta atcggagtct gcatgtcggt ttttaacatt        60
     gtttaatatc gtttaagcaa taacttattt tcgctgtcgt ttgctgcatc tcagtcacaa       120
     acacacgaac actttatgtg cgcgctgccg gccggccgtt tgtttttttt tagcattttc       180
     gcgctgtgaa agaagcaaaa ctgtgttgtg ctgcaaacat taaacataaa aggaaacgca       240
     attaattgtt gttaaacgcg tatattgcat acatatatgt gtaaatagcc gtgtatgtgt       300
     atggtcacat acattacttt gccaagtcaa tgcgctgttg ctaggcaaaa atttcggtaa       360
     aaagaacaaa aacaaagtca aagtttccgt tacgttgttg gcgacgctcg gtgcattaac       420
     atttgcgcgg caataggcat agggtgtttc ctgccctctg aatccggtca gacaattaaa       480
     aaatggttaa cccaggagac gcgattcagc ctcaaaatga tgctcccagt gacatcgagt       540
     tttaccgagc caaagtgcgt tccgttttgc ggcagttaaa cgcaatgaaa gattacttaa       600
     ctgctggagc tactgagcag tttgatgaat ctgatgtcct cgcgcggctg gaatgggtga       660
     actctatgaa cttggaattc gattctgcac agacttcgct ggaaaaactg gacttttcgg       720
     agattagtaa agatacgcgg tttgaatttt ccgcaatctt aatggattta aaggcgaaac       780
     taaatcgggc cctagcagct ctgcgcaaac tgcatttgcc gggttccaca gcggccaatt       840
     ctacatcctt tgatattata aacaatgcgg atctttcttt cagatttagg aagcctcgat       900
     tgccaaatct agagattgct cgttttcaag gatcgtactc agaatggccg gactttattg       960
     caacttttac cacggtcatt ggaaatgatg acgagctaag tgatattgaa aaattacaat      1020
     atttgaggtc ctctttaggc ggcgtggctt tggaaaccat acgatcgctc gagccctcaa      1080
     atgaaaatta taaaaaggct ttaaatttac ttattaatcg atttgataat aaagttttac      1140
     actttcaggc acacgttcag gcaatatttg gtttaaaagg tgtcgagaag ggatcagcta      1200
     agggtcttcg ggagctcagc gattggatga attcgcatct tcgagcaatc cgtaccctgg      1260
     ccactacaca acaaattctg gatggatttc tcattcatat cgtgacacac aagctggatc      1320
     aaaggacccg tgaaaaatgg gaagatgatt tgtcaatctc tgagctatct acctgggatg      1380
     ctatggagtc gtttttggag aagaggtgcc ggatgatgga aaacttggac caagctgtgg      1440
     taattcaaac accacaccat caggtgggaa aaagcatgca tagatataac ccaagtgtac      1500
     tgattacgtc tgctactaac tcaaaccatc caatttgcct attttgcgat gctagagatc      1560
     attatttgcc aaaatgctcc cgatttttaa gcttgagtcc caatcttcga tatagggaag      1620
     caaagaaaat gcacctttgc ctcaactgtt tacgcaaagg ccatagcttg cagcaatgta      1680
     agtcaactca ttgtaaacat tgtcgcatga agcaccattc attactgcac attatcccag      1740
     agtcatccat accatcgacc tcagtttcat ctccatcatc cgacccatct ataagctctc      1800
     agccattacc atcgacttca tcatcactag tgtcatgctc atctccatta tcacaaccta      1860
     atcaccattt aacgcactct ccaccacaaa ccttaaatac aatgccaatg aattacgtgc      1920
     tgcttccaac tgctataatc tacgtaaaaa atagagttgg tgcatttatg ccttgccgag      1980
     caatattaga ttcagcttct cagttaaact ttattactac gcgcctagct agccaactta      2040
     atttgaaact tagacaatcg cacacactaa tttctgggat aggggaatct tccatgaact      2100
     ctgataaggc agtcgatatt ctggcgcaat cacgggacgc aagctatcgc gcgtcattcg      2160
     cagctgttgt aacccatagt atcactgatt accagccaaa tttcaatata aatactacag      2220
     gatggaggat gccacaaaac atttcgctag ctgaccctca tttcaaccag tcacaacgaa      2280
     ttgatctttt aattggcgct ggtctgttct tcgaaataat cgctaaaggg aaaattaatt      2340
     tggatagcac cttgcccacg cttcaaaaca ccaagcttgg ttggatagtt tctggaggga      2400
     tgtcaagtat gctaaatcgc aaatctgtct tggctgccat tgtcaaggat cctgctgatc      2460
     attcagatga tgacacactt gctgccgtag taaagcggtt ttgggagatt gaagacatta      2520
     gttcagaaaa accatcgatg ctggccgagg acttacgatg cgagcagcat ttcaaagaaa      2580
     attgcattag gctggagaat ggtcaatatt cggttcgcct tttatccact ttaggattcg      2640
     aatctttagg tgactcctac tgtctggccc gtcgtcgttt taaaagtttg gaatcaaaac      2700
     taaataaaaa ccccaatctg aaagagcagt attcggcatt tttacaggaa tacctcaact      2760
     taggccacat gtctctcgca ttaagggatc cagcggtgcc acaatttttc ttgcctcacc      2820
     attctgttca gaagcttgaa agcactacaa ctaaacttcg tgtcgtcttt gatggttctg      2880
     ctaaaactac atctgggata gctctaaacg acttgcttct agcaggacca acaattcagc      2940
     aaaaaatctt taatattttg cttcggttta gattttttaa agtagctctt tgtggagaca      3000
     tctgcaagat gtaccgctgc gttcgtgttt cgtaccctga tgactttttg caatgtatca      3060
     tttggcgaga gaactccaca gataaattga gtgtttataa actaaacacg gtaacttatg      3120
     gaaccaagtc ggctgccttc ttggctataa gagccatgca tcagctctct tatgatgaag      3180
     aggaatcatt tccagttgga gcaaaaatcg ttcgtagaga tttctatgtg gacgatctaa      3240
     tctctggtgg cgattcagtt gaagaggtga aagaaattcg tcatcaggta aaggagctac      3300
     tggcgcgcgg ccactttccg atccgaaaat ggtgttcgaa tgaagcaagc gctctcgaag      3360
     gagagtctga tcgcgataaa gagcaattga ttaaattcca cgacggatca gctatcgcca      3420
     aagctttggg gttggtctgg gatccatctt cggataatct tctctttaac ttttcacaaa      3480
     ttttatcaag tcaacgagca acaaaacgga ttgtgttgtc aacaattgcg aaattttatg      3540
     atccgcttgg tttaatagca cccattgtta caaaatccaa aatttttttg caaaagctat      3600
     ggagcactaa catggattgg gacgacacac tgccagagcc ccttctttcg tcatgggggg      3660
     agttgacctc tcagttgtcg atcgtccaga acctaaaatt tccacgattc gtaatgcaat      3720
     cgcaggcttc cgtcgagatg cacggattct gtgatgctag cacagcagct tacggcgcgt      3780
     gcttatattt gcggtcggag gccaatggca acgctgaagc acatctactc tgcgccaagt      3840
     ctagagtagc tcccttaaaa gctttaacaa taccaagatt agaactttca gcagcgtgtt      3900
     tattggctga gcttatcgta aacgttaagg aaaccatagg ttttgattgc acctttcact      3960
     gctggtcgga ctcgtctatt gtgttggctt ggattcggca acctccgagg gagttcaacg      4020
     tatttgtgtc taatagaatc gcgaaaatcc aggaaatgac gaaaggtatg gcttggcatc      4080
     atgttccaac agacttgaat ccggcggatg tggtatcgcg cggatgtacc cccaaagaat      4140
     tgctggagca ctccctttgg gcaaatggac ctccatttct actgaaagga gcgtcgaact      4200
     ggccctccct attagatgca gtaaagaacc ttccggaacg gcgttccacg gcgctaattg      4260
     gaaccgttgg cactgacata tctatcaact gcaagtttct caactcattc gacaagttgc      4320
     agcgtgtttt cgcgtacatt tatcgattca tttcaaattg cagagccaaa tcattacctt      4380
     caaccatcta tcttaccgtt gacgagatca gcttcggaac cgttctgctt ctaaggagca      4440
     ttcaacaggt tcacatagcg gtggagtatg aggttcttag ccaaggcaag ccttgtcctc      4500
     cgaagagcaa gttgatttct ctgaggccaa tacttagctc tgagggttta cttcgtgttg      4560
     gtggaaggct tcaaaatgcg agcttggact acgaggctaa gcatccgata ttgttaccca      4620
     aggatcatcc ggtcaccagg gcgattatcg tctattatca tgagaaatac ttccacgcag      4680
     ggccacaggc gttgctcgct gctttacggc aaaggtattg gccacttgga ggccgaaagt      4740
     tcgtggctag cgtcatcaac aaatgcgtca gatgctttcg gatgaagcct gtggcttggg      4800
     aacacgtgat gggtagcctg ccagcagatc gagttcagcc taacccagca tttcacacca      4860
     caggagtgga ctattgtgga ccgttctatc acaagtcaga ggcccggaac aaagcacccc      4920
     acaagtgcta catcgccgtc tttgtctgct tttcgacgaa ggctgcgcac ttggaagtcg      4980
     tccaggatct cacaacggat tctttcattg cagctttgag aagattcatt agcctcagag      5040
     gcagtccacg tactatttgg agtgataatg cgacaaactt tgttggcgct aaacgagagc      5100
     tagcggaact gaaggagtta tttttgagcg aaccgcacac ggcttcgata acttcttcct      5160
     gcttagcgaa tgggattgat tggaagttca tacccccgcg tgccccacat ttcggtggtc      5220
     tatgggaggc ggctgtaaaa tcggcaaaat ttcacttcta ccgagttgtc ggtgcagcca      5280
     tcttagccct tgatgaatta agaacwcttg catatgaaat ttctgccatt cttaactccc      5340
     gtccgctttg tccaatttca gaaaacgctg aaaattttga ggtgctaacg ccagcgcatt      5400
     tcctcaaagg ttccagctac acaaggtttc ctgagcctga cgttactcat cttcgcgaag      5460
     gccggttaag cagttggcaa agaataacac aaatgcagca gcacttctgg aaaagatgga      5520
     gcagagagta tttgtccctg ttgcaagaac gaagcaaatg gcggatcaaa acatccaaca      5580
     tccaaatcgg tcgtgttgta ttgcttcagg aggacaacct tccaccgatg aaatggcagc      5640
     ttgggtgcat ccatgaagtc atacccggaa aggacggcgt cgtcagagta gctgtggtcc      5700
     ggacagctac aggtcttacc aaaagggccg tcaccaaact agccgctctg cccatcgaat      5760
     cccatttggt tggaaccgtg cctcttccaa cggggggagt a                          5801
//
ID   BEL-4_DEl-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DEl_;
KW   BEL-4_DEl-I; BEL-4_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-320
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 507-507 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 320 BP; 92 A; 68 C; 59 G; 101 T; 0 other;
     tgtttagagc agaccgccag cacctagtaa aatgctcata ggtgtgcgct gcacacgcag        60
     ggctgttata cagctttgca tgtttattgt tcttcgtctt tcttatctcg ctacatttgt       120
     cgcgttatct attcagctga gctacagcga aaacatgtac aaaatttgaa gtcaagcttt       180
     cggcaagcca gttatacaaa atcgctgcaa ctccgagcac agctaataaa atcaagaaat       240
     aatttcaatt gaacctatcg tgcgtttaat ttatatttct aaactaaagg gtggcatttt       300
     ggttgttttc cccataaaca                                                   320
//
ID   BEL-4_DEu-I repbase;    DNA;    INV; 5957 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DEu_;
KW   BEL-4_DEu-LTR; BEL-4_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5957
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 853-853 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4886-5467] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(482..3070,3074..5806)
FT                 /product="BEL-4_DEu-I_1p"
FT                 /translation="MKAGSDTPTLEQLVNLQANRFQSVKSLLQNFKKDSQS
FT                 RKTRIYLKKRLEQVEELRSAFRETDSVIVNLEGFSVSAYATKDFQSEFEER
FT                 YMDAYCAFAEELDKLGPEACAPPPPVSGGADAEVRLNMPQMSVPKFSGACV
FT                 DWPGYYDAFTSLIHNNANLSSVQKLHFLKESLPRDRDNDIRQMQLTEGNYS
FT                 VAWGLMIKRYNNPRLVFAHHMNAIYALPRLQKDNTELIRSMLSTVNVCLAA
FT                 FRRVQALDGESQHWLAHYVASRLPKETHNAWEHHQGSCSTVPSYRELESFL
FT                 NDRLVVMDAIENRGSSFDSAAGPGSSDPTKRVRVHSAQEHARRPSGACYHC
FT                 GGDHILRRCSTFLALDCYQRKDIVSRAKLCINCLSKAHALSRCTSNKGCQV
FT                 CGQRHHTLLHFPVLAHSQSPSGVPPHHVAPTPSAPADRDSVSQQRRQPTTD
FT                 QNPGASYGCYSATSSDPSSRNVLLATARITVRNPVNGLHAVINALVDQGSE
FT                 ATIVSEHVVQSLHLKRSGTRTSIFGMGLGGGRRCKYTVNFEIRSNVNPDFS
FT                 VDVDSAYVLNSVTSCLPCRSFMPQRWDHIRGLPLADPNFSRSKRVDLILGV
FT                 DLLAQIMLPDTRIGLPGEPIAQNTHLGWILSGLADGVREATQVRCHRVLLD
FT                 TEALLKRFCEVEAVPDRSLTSEGDLWCEAFFQKTHIRRSDGRYVVRLPFKT
FT                 YMDPTMVLGRSHQMALNRFLQLERRLSSSPERWSKYVEEIEEYFALKQIAP
FT                 AVGSESSLLMRTSTGRHVASCVLPHHAVFKKEPQSLKQRIVFDASARTSNG
FT                 RSLNDVLWTGPALQNDMSHVILNWRKYRFVFAADIQKMYRCIDVHPEDAQY
FT                 QRILWRAADGISVFALSTLTFGTASAPFTAIRVIQQLAKDERRSFPKAEEV
FT                 LMSEIYVDDILSGGHTLEEARDKRTQVSGAIKSACMELRKWSSNESSLLLS
FT                 IPAEHQCSRTPLNWDTTDPIKALGMYWLPNKDCFKFQVNFEIPARFTKRMI
FT                 LSSIARLFDPLGLIAPVIIVGKLILKEVTMAKKVHADGTQSALEWDDEVPD
FT                 ALVERWRTFRDGLTRIDDISIDRWIHYSPGCIVSAQLHAFCDGSSTSYAAS
FT                 VYLRLECEDGACYSSLLASKSRVTPTRPLTIPRTELSGAVLAVKLVKWLTS
FT                 AKWLSDLPIESFYWTDATILLHWLYGDITRWKTFVANRVAFILDHSSPSQW
FT                 RHVGTAENPADCATRGLSPGELKGFGLWWRGPEWLTRSPSDWPSMEFEQVD
FT                 TNDAALEAKAAKVRVHHAVPLPSFVGRFSTFSRAVRVTAYALRFRHNAVGK
FT                 GERRIGPLAIEELDFALGAIVRIVQRESFPMDLAAVRESKRLPARSKLLSL
FT                 SPILSEGILRVRGRLRHSNLPYERRHPIILPSSHHFTELVIRHSHVLTLHG
FT                 GAQLTLAHTRQRFWIVTGRQAVRRVVRKCVQCFRAQPSASAQLMGDLPLHR
FT                 VNPPSRPFIATGVDYTGAIELKAARLRGTSFYKGYIAVFICLATKAVHLEA
FT                 VTGLTTEHFLLALDRFTGRRGMVQHLYSDNGTNFVGADNVMKKFYCKLQED
FT                 YDHLIAPKLASQRTTWHFNPPQSPNFGGLWEANVKSVKHHLKRVIADRRLT
FT                 YEELTTVLISIEACLNSRPLCPLTADADDLEVLTPAHFLIGDSLHAPPELR
FT                 PQSRSFAEQFLIQQAMVRHFWKAWSRDWLAHLQQRPKWCREAEGLQLGDLV
FT                 IIKDDRFPPSQWLLGRVVELHPGTDALVRVVTLKTKQGRLKRSVSKLCPLP
FT                 IRS"
XX
SQ   Sequence 5957 BP; 1355 A; 1490 C; 1701 G; 1409 T; 2 other;
     tggtggccca tgaggggaat ctgcaatcgc aaacataatc gaaaattctt aattctgtgt        60
     aaataagcgc cgttagatcg caactgcgtt aagtttgcaa gtcggctctg cataccgcga       120
     aaagtgaaga agaaagaaaa cggcgataca tagacgcagc tacggaagtt tctggacctt       180
     tctggacgtt ttcttcgctt ttcttttggg cataacggaa tcacagctgc acctagacta       240
     caggccggcg gctctgcgaa tcacggaaga ggagaactgc gatacatagg cgcaagacga       300
     cagttttttg aactttggag acggtcgttg atcttcgctt cgtcttgggg tggattctgg       360
     tatacataac tgagtaagta gacaagttgt gtgcgaataa aatttactga gttttttcta       420
     ttaaattatt atttggggtg gtgagttgcg cgcgaagttc ggttttacaa cattggtcaa       480
     catgaaagcg ggatcggata ctcctacttt ggagcagctg gttaacttgc aggcgaatcg       540
     atttcagtcc gtgaaatccc tgttgcaaaa ttttaaaaag gattcgcaat cgaggaaaac       600
     gaggatttac ctgaagaaac ggctggaaca agttgaggag ttacgaagcg cgtttaggga       660
     gacggattca gttatcgtga acctggaagg attttctgtg tcggcctatg ccacgaagga       720
     tttccagtcg gagttcgagg agcggtacat ggatgcctat tgcgctttcg cggaggagtt       780
     ggacaaactt ggaccagagg cttgtgcgcc tccgccgcca gtgtctgggg gcgccgatgc       840
     ggaagtgcgg ctgaacatgc cccagatgtc ggttccgaag ttctccggcg cgtgtgtcga       900
     ttggccaggc tattatgatg ccttcacgag cctaatccac aacaacgcca atctgagtag       960
     tgtgcagaag ttgcactttc tcaaggagtc gctgccgagg gaccgcgata atgacatccg      1020
     tcagatgcag ctcacggaag ggaactattc ggtggcttgg ggattgatga tcaagaggta      1080
     caacaatcct cgcctcgttt tcgcccacca catgaatgcc atctacgcgt tgcctaggct      1140
     acagaaggac aacacagagt taatacggtc gatgttaagc acggtcaatg tttgtctggc      1200
     tgcattccgc cgcgttcaag ccttggacgg ggaatcgcag cactggctgg cacactacgt      1260
     agcatcgagg ctaccaaagg agacccacaa cgcttgggag caccatcaag gaagttgttc      1320
     cacagttcca tcctacagag agttggagtc atttttaaac gatcggctgg ttgtaatgga      1380
     tgcgattgag aaccgaggct cgtcgttcga ctccgctgct ggcccaggat cttcagaccc      1440
     taccaaacga gtgcgagtgc acagtgcaca ggagcacgct aggcgcccta gcggcgcctg      1500
     ttaccactgc ggcggcgacc atatcctgcg tcgttgctca acgtttttgg ccttagactg      1560
     ctaccagagg aaggacatag taagcagggc taaattatgc atcaattgtc taagtaaggc      1620
     acatgccctt tcgcgctgca cgagtaataa aggctgtcaa gtttgtgggc agcgtcatca      1680
     cacattgttg catttccctg ttttggctca tagccagtcg ccgagcgggg tgccgccgca      1740
     tcatgtggcg ccgactccta gtgcacctgc agacagggat agcgtatctc aacagcgcag      1800
     gcagccaacg acagaccaga accccggcgc atcttacgga tgctattcag caacgtcatc      1860
     ggatccgtct tcgagaaatg tccttctcgc cactgctcgt atcaccgtgc ggaacccggt      1920
     caacggactg cacgctgtca taaatgccct ggtcgaccaa ggatcggagg caaccattgt      1980
     ctcggagcac gtggtacagt ccttgcatct gaagcgatct ggcacccgaa catctatttt      2040
     tgggatgggt cttgggggcg gtcgtcggtg caagtatact gtcaattttg aaatccgtag      2100
     taatgttaac cctgactttt cagtagacgt tgattccgcg tatgtcctca attcggttac      2160
     ttcctgtctt ccttgtcgca gcttcatgcc tcagcgttgg gaccatatac gagggctccc      2220
     gctggcggat ccgaacttct cacgatcgaa gcgagtcgac ctcatcttgg gtgtggacct      2280
     gttggcgcaa atcatgttgc cggacaccag gatcgggctg cccggcgagc ctatagctca      2340
     gaacactcac cttgggtgga tcctatctgg tttggcggac ggagtgcggg aagcgaccca      2400
     ggttcggtgt catcgggtgc tcttggacac cgaggctttg ctcaagcgtt tctgcgaggt      2460
     ggaggccgtt ccggaccgtt ctctcacatc ggagggggac ctctggtgcg aagccttctt      2520
     tcagaagaca catattcggc gatcggatgg ccggtacgtg gtacggttgc ccttcaaaac      2580
     ttacatggat ccaactatgg ttctgggaag atcgcatcag atggcgctga ataggttctt      2640
     gcagttggaa cggcgtctgt ccagcagtcc ggagcggtgg agcaaatatg tcgaggagat      2700
     cgaggagtac tttgccctca agcagatagc gccggcggtg ggcagtgaaa gcagtttgct      2760
     gatgcgtact tctacgggta ggcatgtggc ttcctgcgtg ctgccgcatc atgcggtctt      2820
     taagaaggag ccgcagtcgc ttaagcaaag aatcgtattc gacgcctccg caaggactag      2880
     caacggaaga tctctaaacg acgtgttgtg gactgggcca gcccttcaga acgacatgtc      2940
     gcacgtcata ctgaattggc ggaaatatcg tttcgttttt gcagcggata tccagaagat      3000
     gtatcgttgt atagatgttc atccggaaga cgcccaatac cagcggattt tatggcgggc      3060
     ggcggatggg wccatcagcg ttttcgcgtt gtcaacgtta acctttggta cggcgtccgc      3120
     accattcacg gccatcaggg tcatccagca gttggcgaag gacgagcgcc gttcgtttcc      3180
     caaggcggaa gaggtgttga tgagcgaaat atatgtggat gacattcttt ccggaggtca      3240
     cacgttggag gaggcaaggg ataagcggac acaagtatcg ggggcgataa aatccgcgtg      3300
     catggagttg cggaaatggt ccagcaacga gtccagtctc ttgctctcga ttcctgcgga      3360
     gcatcagtgc agccggactc ctttaaactg ggacactacg gatcctatca aggcgttagg      3420
     gatgtattgg ctcccgaata aggactgttt taaatttcaa gtcaattttg agattccagc      3480
     taggtttacc aaacggatga ttctatcgag catagctagg ctgtttgatc cactgggtct      3540
     catcgcacca gtcatcatcg tgggaaagct gattttaaag gaggtaacca tggcaaagaa      3600
     agtgcatgcg gatggcactc agtcggcgct ggagtgggac gacgaggttc cggacgccct      3660
     cgtagaacgg tggcgaacgt ttcgggacgg gttgacgagg atcgacgaca taagcataga      3720
     ccgatggatt cattattccc ctggatgtat agtgtcagct cagcttcacg cgttctgcga      3780
     cggttcatcg acatcttatg cggcctcggt ctacctaagg ctcgagtgcg aggacggagc      3840
     atgctatagc tcactgttgg cctcgaagtc aagggtgact cccacaaggc ccttgactat      3900
     acctagaacg gagctgagtg gcgcagtttt ggccgtcaag ttggtaaaat ggcttacttc      3960
     ggctaaatgg ctaagcgacc tacccatcga atcgttctac tggacggatg ccacaatcct      4020
     tttacactgg ctgtacgggg acatcactag gtggaagacg ttcgtggcca acagggtcgc      4080
     gttcattctg gatcattctt cgccctcgca atggaggcat gtgggcacgg ctgagaatcc      4140
     agcggactgt gcgacaagag gactgtctcc gggtgaattg aagggctttg gcctatggtg      4200
     gcgaggccct gagtggctta cacgcagtcc gagtgactgg ccttctatgg agttcgagca      4260
     ggtcgacacc aacgatgccg cactagaggc aaaggcggcc aaagtacgag ttcaccacgc      4320
     agtcccgctt ccgtcgttcg ttggcagatt ttctactttt agccgggctg tacgagtcac      4380
     ggcctatgcg ttgcggttca ggcacaatgc tgtcggcaag ggggagaggc gcatcggccc      4440
     cctagccatt gaagagcttg actttgcttt aggggctata gtgcgcatcg tgcagcggga      4500
     atcgttccca atggatttgg ctgcagtaag agagagtaaa cggctacctg cgcgaagtaa      4560
     gctcttgagc ttgtcgccga tcttgtcgga aggcatcctg cgagtgaggg ggcgactacg      4620
     gcattctaac ttgccatatg agcgccggca tccgataata ctcccaagtt cccatcattt      4680
     cactgagctg gtaattcggc actcgcatgt tttgactctg cacggaggtg cgcagctgac      4740
     gttagcgcac acccgccagc ggttctggat agtgacagga aggcaggcag ttcgaagagt      4800
     tgtgcggaaa tgtgtccagt gtttccgggc gcagccctcc gcttcggctc agctcatggg      4860
     agacttgccg cttcatcgag tgaacccccc tagtcgtcca ttcattgcaa cgggagttga      4920
     ctacacaggc gctattgagc tcaaggcagc acggttgcga ggcaccagct tctacaaggg      4980
     gtacatcgcc gttttcattt gccttgcaac aaaggcagtg catttggaag cggtgacagg      5040
     cctcaccacg gagcattttc tgctggcgct ggacaggttc accgggagga gagggatggt      5100
     tcagcacctc tacagtgaca atggaaccaa ctttgtgggt gcggacaacg taatgaagaa      5160
     gttctactgt aagcttcaag aagattacga tcaccttata gcccccaagc tcgcgtcaca      5220
     acggacaacg tggcacttca atcctccgca gtcgcccaat ttcggcgggc tgtgggaggc      5280
     taacgtgaag tcggtgaaac atcacctgaa gagggtcatt gcggatcgac ggctcaccta      5340
     tgaggagttg actacggtgc ttataagcat agaagcatgt ctcaactcgc ggccgctttg      5400
     tcctctcaca gcggacgcag acgacctaga ggtgctcacg ccggctcatt tcttgattgg      5460
     tgactcgctg catgctcctc ctgagttgcg cccacaatct aggtccttcg cggagcagtt      5520
     cctgatccag caggctatgg tacgtcattt ctggaaggct tggagtcggg actggctagc      5580
     acatctacag cagaggccca agtggtgccg cgaggctgaa ggactccagc tkggcgacct      5640
     cgtcatcatc aaggacgacc gttttccgcc gtcgcaatgg ctactggggc gcgtcgtcga      5700
     gctacacccg gggacggatg cgttggttcg agttgtcacg cttaaaacca agcaaggccg      5760
     gttgaagcgt tcggtgtcga agctctgtcc actgccgatc cgatcataag cgccctcaca      5820
     tacacacctc aattataatt aactcgtctc ttgcgcacac ttcttgttta ctttcccata      5880
     ctagattcta ccccacaacc aggatggacc ggacaagcga aggtttctca tgctaggtct      5940
     agcattggcg ggcggca                                                     5957
//
ID   BEL-4_DEu-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DEu_;
KW   BEL-4_DEu-I; BEL-4_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-303
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 854-854 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 303 BP; 75 A; 58 C; 88 G; 82 T; 0 other;
     tgttaagttt gctgcttgtc ccagtgtgct ggaagctggg agcggggagc ggagagcaac        60
     agctgatcgc tctcgcgttt tgggacgatg cgtgggagaa cgaaagcggg aagagggaaa       120
     aagtcagtcg tcttcggcaa gcgagagaac gcgcacgttg catctaacgc gggacgctat       180
     ttgcatatgt catatattaa taaacgtgaa tttttgtgaa tttgtctttt gtgttttgca       240
     ttgcctggga cctctcttac aatgaccctt tgctagtcga atacaagggg acacaattat       300
     aca                                                                     303
//
ID   BEL-4_DFi-I repbase;    DNA;    INV; 3075 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   21-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DFi_;
KW   BEL-4_DFi-LTR; BEL-4_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3075
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 883-883 (2012).
XX
RN   [2]
RP   1-3075
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   'CTGAT' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..3002
FT                 /product="BEL-4_DFi-I_1p"
FT                 /translation="MSXENSVSVTGNSSSNRVTFLKRKAXSLFNRVERLME
FT                 SLSSSALNSFDDSGLHVRLELIEELQGAFKKVLSELEELDFDEIENDLDEK
FT                 FDDVVVILKSTVRSEITKRSSQLLQQSTFADGNTSGYFGHQQRQALRRAIP
FT                 LPALELPKFAGGYANWADFYSMFTTIIDSHPDLTNIEKLQHLRSCLRDSAL
FT                 ETIRSLEISDGNYSVALDLLQKRFDNRRLVFQAHITEILGLKAVQSGSVSM
FT                 LRELSDKFNAHIRALKGLGTTEQIAGCIIVQILLQKLDPASQAKWEERLED
FT                 PVFINLIPTWESMASFLEQRCRTLETMDFAMASYASGNQVGNNGTSNSRRS
FT                 AFVATNINPWICSFCNASGHSIHYCQDFNALPPANRLQEVKRLSLCINCLK
FT                 IGHQLRQCNSSNCRACGAKHHTLLHLGNLASASPQAGSQLPEALAAVSLNA
FT                 VVEPSAVPSTSTALIAQDFSTDIVLLATATVLVKNRSGVFVPCRVLLDSGS
FT                 QLHLITSRFADQLQTKKMKSSASVTGIGDSSFVTNGHSVNITMQSRTSDYT
FT                 VNLTAVIAPNITELQPSFNVDIGSWKIPQNIKLADPTFYIPQRVDLLIGAS
FT                 LFYELLCVGQIKLAPGLPLIQKTRLGWVVSGGYGVSNGSSLISPLAVPLVS
FT                 KENSLDRLDDRRKVLLIKSPYADIVACSKLANSFAALQRIFGYVYKFINRI
FT                 RQPDLNASDIQSTIKSLQSKGVVAPSSSFGSPFPFMDQFGLLRVDGRLRNS
FT                 SLDFNGRHPIILSRSHPVTAAIITHFHERNLYTGPRALFCIVRSQYCPIGG
FT                 RKTERLDGWQRVAYLQQVRWTRWKEDYLTLLQQRSKWRTPKPGLVVGDVVL
FT                 VKDENLPPXKWPLARVVELLCGXDGVARVAVLKTTSGVTK"
XX
SQ   Sequence 3075 BP; 762 A; 722 C; 717 G; 866 T; 8 other;
     tttggtgacc ccgacgtgat ttgtgcataa aagakaccca gtgcaagtca caaaaattaa        60
     tttattttac caggctgcat atctcgcttt atcggtgttg cagctacatt gtgcgttggc       120
     cggccataaa caaaacaaat ttgtataagt tgatttgtgc aaataataac actcttggtt       180
     acacaagctt gtacataagg cggtacatag accagtagcg gaccgatttt tcggtattcc       240
     cctttgcgct catcttcccg ctgaagccga attttgcccg ccgagtctgc tgcatttttt       300
     tgttgttgtt gttgctgctt aacatgtctw cagaaaattc ggtaagcgtc accggcaata       360
     gcagctcaaa cagggtgaca tttctgaagc gcaaggcaam ttcactattt aatagagtgg       420
     agcgtttaat ggaatctctt tcaagttcgg cgttgaattc gtttgacgat tctggccttc       480
     atgtgaggtt ggagcttatc gaggaacttc aaggagcatt taaaaaggtt ctcagcgagc       540
     ttgaggaatt ggatttcgac gaaattgaaa acgacttgga cgagaaattt gatgacgtcg       600
     tcgtaattct taagtcgacg gttcgatcgg agatcacaaa gcgctcctcg caattgcttc       660
     agcagtcaac ctttgctgat ggtaatacgt ccggttattt cggccatcag cagcgacaag       720
     ctctgcgccg agctattcca cttcccgctc ttgaacttcc gaaattcgct ggaggttatg       780
     cgaattgggc agatttctac tctatgttta cwaccatcat agatagtcat cctgacctga       840
     ccaacataga aaagctgcag catctacgtt catgcctgag ggattctgcg ttggaaacca       900
     tccgctcgct ggaaatttcg gatggcaatt attctgtkgc wttggactta ttgcaaaaaa       960
     gatttgataa tcgtcgtttg gtttttcagg cacacattac tgagatcctg gggcttaagg      1020
     cagtgcagag tggttccgtc tcgatgcttc gtgagctgtc cgataaattt aacgctcata      1080
     ttcgtgctct aaagggattg ggcacgacgg aacaaatcgc aggttgcatt atcgtccaaa      1140
     tactgcttca aaagctagat cctgcgagcc aggccaaatg ggaggagcgg ttagaggatc      1200
     cagtattcat caatctaatt ccgacgtggg aatccatggc atcatttttg gagcagcgat      1260
     gcagaacatt ggagactatg gatttcgcca tggcaagcta tgcgtctggc aatcaggtgg      1320
     gaaacaacgg aacgtctaat tctcgtagat ccgcttttgt tgccacaaat attaaccctt      1380
     ggatttgttc gttctgtaat gcttctggtc actccattca ttactgccaa gattttaatg      1440
     ccctgccccc tgcaaatcgg cttcaagaag taaagaggct ctctctttgc ataaactgcc      1500
     ttaagatagg gcatcaattg aggcagtgca attccagcaa ttgtcgtgca tgcggagcta      1560
     aacaccacac cctccttcac ttgggaaatt tagcctcagc ttctccacag gcaggatcac      1620
     agcttccaga agctcttgcc gctgtctcac tcaatgctgt cgtagaacca tctgccgtgc      1680
     cttccacatc cactgctctt attgctcagg atttcagtac tgacattgtg ctcctagcca      1740
     ctgccaccgt tctcgtaaaa aatcggtctg gagttttcgt tccatgtcga gtccttcttg      1800
     attcgggctc tcaactgcat ctaataacat cccgctttgc agatcagctt caaacaaaga      1860
     agatgaagtc ctcggcatct gttactggaa tcggtgattc gagctttgtt acaaatggtc      1920
     actcagttaa tattacgatg cagtcccgaa cgtctgatta cacggtgaac ctaaccgcag      1980
     ttattgcccc caatataact gagctacagc ctagtttcaa tgtggacatc ggcagctgga      2040
     aaataccgca aaacattaaa ttagctgacc ctacatttta tatccctcag cgtgtggatc      2100
     ttttgattgg agccagtttg ttttacgagc tgttgtgcgt tggacaaatt aagctcgcac      2160
     ctggattacc gcttattcaa aagactcgac tgggatgggt tgtttccgga ggatatggcg      2220
     tctccaatgg ctcttcatta atctcgcccc ttgctgtacc tctcgttagt aaggagaata      2280
     gcttggatcg ccttgatgat cgtcgaaagg ttctgctaat aaaatcacca tacgcagaca      2340
     tcgtagcctg ttccaaattg gcaaattcct tcgctgcgct tcaaaggatt ttcggatacg      2400
     tctacaagtt tatcaatcgc attcgtcagc cggatcttaa tgcgtcggat atccaaagca      2460
     ccataaaatc cttgcagtct aaaggagtag tagccccatc tagttcgttt ggatctccat      2520
     ttccctttat ggatcagttt gggcttctta gagtggatgg ccgactaaga aactcgtcgc      2580
     tggacttcaa tggccgtcat ccaatcatat tgtcacgaag ccatcctgtc actgccgcca      2640
     tcattactca ctttcatgag cgtaatctgt acactggacc tcgcgcccta ttctgcatag      2700
     ttcgatccca gtattgtcct attgggggga ggaagacgga acgattggat ggatggcaac      2760
     gtgtggccta tttgcagcaa gtccgctgga cccgatggaa ggaagattac ctgacgctac      2820
     tgcagcagcg ctctaaatgg cgtaccccga agcctggcct ggttgtcggt gacgtggtgc      2880
     tggtcaagga cgagaacttg cctccgawga agtggcccct agcgagagtc gttgagcttc      2940
     tgtgtggtgs agatggagtt gctcgagttg cagtcctcaa gacaacatca ggagtgacga      3000
     aatgagcagt taataagctg tgtctgctgc cccttaagga tgctgttgaa agccaggctt      3060
     ccaacggggg gagta                                                       3075
//
ID   BEL-4_DFi-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   21-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DFi_;
KW   BEL-4_DFi-LTR; BEL-4_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-316
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 884-884 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 316 BP; 76 A; 77 C; 47 G; 116 T; 0 other;
     tgtcgggtca tccagccgca gcagatattt aggttctctt aatgctagct cttagcttat        60
     ctgcataatt accatcgctc tctctctctc tctttatctt tctattcgct ctctctcgtt       120
     gcttgttggt ttatactttg ggtcagcaat cggctgatcc gcgtctcaat tcaattgtat       180
     tacttctttt cgatcccgcg gaccatttgt aactcttttt cgtcgaaaat aaaatcgctg       240
     ctacagaatt cgaaaacaaa attttcttcg tgcataatta cttcaacagc taataaaaaa       300
     gcttattagc tcaaca                                                       316
//
ID   BEL-4_DMoj-I repbase;    DNA;    INV; 7626 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DMoj_;
KW   BEL-4_DMoj-LTR; BEL-4_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7626
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1259-1259 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4767-5345] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           526..2682
FT                 /product="BEL-4_DMoj-I_1p"
FT                 /translation="MLSEKVIKLLKMQSDLVSRLKKLDSSEEIRPPSEILG
FT                 ELEKIKEELENNHTLLLKVGVIDHAYFNNKEFDKAMKSIQDLKLEIMRAEK
FT                 EEDKDVKHVRAVTVHKSSEEEVEFESKVEQLKLYLVEVYEDIAKGNVGIFE
FT                 IRKNKIKYLWNKVSKLVQELRNKYVSNKMFDEEVNELDFDVQNAISALEAK
FT                 KGTPIQPIIHEKMDNLPGLPKIQVPIFFGDVKDWDLFAELFCDLIDRREDL
FT                 TPSIKFSYLKSSLRGEAKSMVAHLLTGSADNYSTAWELLTKRYENKRKIFS
FT                 EQLNRIMDLPNLNIDSSKSINYFIDTINESIHIIKSKAQLSEEVDKIFAHI
FT                 ILRKFSKEALQLYESQIKKTKEIQLLTDVMDYLDQRHCSLSTSNKEEKKIH
FT                 SGYNCPICKVVGHSTTQCTKFKAMVPRERLDAARKIQLCLRCLRHTNTNRC
FT                 TSSMNCYFCKKPHHTMLHINTEKVNTVVTNEEALLATAIIKVKAIKGNYIN
FT                 LRALIDSGSQKTIISEEAAQLLNLPRIRNETEISGVSSENTCRSKHKVKLI
FT                 IKPREPNKEQFRVEAIILSKLMKALPVSKANIDMAQWHNFTLADPQFYKPG
FT                 RVDIIIGADLYPHVLKDGIVKIDGLLGQKTEFGWIVSGCTKSKGKTTIVAT
FT                 SIAIEDLDRFWELENEEEEDVKEIEFCEKNFQNTTKIDSRGRYVVTIPFKE
FT                 ENELGESKPQAIARFLSLD"
FT   CDS           2706..7478
FT                 /product="BEL-4_DMoj-I_2p"
FT                 /translation="MNEYLQLGHMISTNKEGKYYLPHQAVLRDSSLTTKLR
FT                 VVFDASAKTTNKKSLNDIMWTGPRVQKDIFDIILKWRRWEYVVSADIEKMY
FT                 RQIKIAKHDQEFQYIVWRDSPSKKLKNFKLTTVTYGTASAPYLATRVLLDI
FT                 ANNCNNATIKEIIKTDFYMDDLMTGAESIQNCKEIVECVSSELAKVGFNLR
FT                 KWISNKSEIIEEIDRNEENKVLSIEENESIKTLGLQWEPLKDEFKFSFTDN
FT                 NIKTINKRTVLSTLAKIYDPLGWLAPVTIIGKLFMQKLWLTDKKWDEELSK
FT                 EEIKEWKEYQDNLKHLQNLRIPRWVKIQKDIEVQFHGFADASEKAYAAVVY
FT                 AKVGNSVMILASKCKVNPKKNRKTIPKLELCAAHLLTKLISKITESIKINV
FT                 EIFAWSDSTITLAWIQNGLNKNKFIRKRTDEIRKMSEIKWNHVKSEDNPAD
FT                 IASRGINTYKLVECEIWWNGPKWLAKSKNHWPKEEENVDEEKISVNTMIEN
FT                 SEKNIIGELIKRYSCMQKLQKVVAFIIRFIKIITKKTIQKPQKYITVEELN
FT                 NARILIIKQQQACQFRTEIGKLLGKKYLQNKSKIISLNPFLDEKGILRVGG
FT                 RLEKASIGFDVKHPIILDKCHLVNLIIKDAHTITLHGGINVMRNYIQRKYW
FT                 IIGLRNCLKKYLRNCITCTRYNHTPTQQIMANLPMNRITMSYPFLNTGIDY
FT                 AGPYYMKCSKYRGQKMYKGYIALFVCMATKAIHLEAVSDLTSDAFLAAMRR
FT                 FIARRGKCLNIYSDNGTNFVGAAKKLEKEFKKTIQENTKISSTLEKEQIKW
FT                 HFIPAASPHFGGIWEAGVKSVKYHLKRVIGDSNLTFEEMTTLLCQIEAVLN
FT                 SRPLYTTGDDIDNIEVLTPGHFLIGRPTVSEVESTGEEKIGNLDRWKLIQK
FT                 MRRDFWNKWKNDYLYTLQQRNKWKKEMPNLEEGQIVLIKDENCHPARWPLG
FT                 IIKEVHKGQDNKVRVVKVKSQEGLVTRPINKVCQLGELKNEDSDLRSTRQS
FT                 SRGKGGSRLKVLMAMLVLALFCQVSSAEVTKSDKITISKLGNNSAIYLDPM
FT                 GEVEIVTSSWDLIIYYNLDSYFDMLKKGSELEGKMRAVCTKLQSFEDQCNI
FT                 ILNNTKRRIAELEDNNKLFILQNKPRTKRAPFEFMGSLYHLLFGIMDADDR
FT                 EQMEENMVSLLDNQHNIKKLSEKQTSIIDSTANILKRTTEEINIHFNDMNI
FT                 RIDNMTELLKESYYVYKEAINFFMITNQLNALIEECDKIQTGVINMLIDIN
FT                 HSRLSPVILKPYQFGEEIAKIKESLSENLVLPGKRTGTELKEIYQLLTTKG
FT                 TFIDNKIIVNAKIPLFSRYPSHLYKVIPIPVYNDDQMIMVHQRTEYLVYNF
FT                 EIDSYHLMAEATLNKCKKWQPNKLICEGNWPWDNANDNSCEISPFKPNRPA
FT                 NCIYQTLVHSKTYWVELEGKSRWLFKVPINEKLSVRCKGAQQELIELPEQG
FT                 VLKMKSDCTARSGDKTIIAHNNDIHTEKYEKIAPSYVGKIVDVPKIVWNPL
FT                 ALSRINHTKEIEHLQIAIQQMKESHIELKGLHFHHISGHASMLISILIALI
FT                 LIIYTIRKCNVKRRLKAITFPGPI"
XX
SQ   Sequence 7626 BP; 3128 A; 1141 C; 1426 G; 1931 T; 0 other;
     ttttggtcct tcggcgttct ctgtgttttc ccccacccgt ggtaagagac acagagaaag        60
     gaaccagcgt cttaatgctg atagttttaa aactcagctt aagacaaaat atagtatatt       120
     actctgtttt cccccgccag tggtaagaga cagagtatat acatatataa actaaaagtg       180
     gtgctcaaat tttttgtagt gctggtgggt ctgcattccc aaaaagggac tagaccaaat       240
     ttgaagtgat tctgttctct cgcgtgaagt gcggagacag tcgaagtaat tctgttctct       300
     cgcgcaaagt gcggagaggc agaatactac caaaaggttt ctgttctcca tccaaaaaga       360
     gagacagagt aaaactacag cgaaattcga cgaaagaaag cgactcatca gaaccgtcag       420
     tggccaacgg gaagaggaat atcaccaaga tcatcaggcg cccccttcag agaagactgg       480
     atcaacagga ggacagcgcg gataagataa agataagtcg taggaatgct gtcagaaaaa       540
     gtgataaagc tcttgaaaat gcaatcggac ttagtgtcca gattgaaaaa actagactca       600
     tctgaagaaa ttaggccacc gagcgaaatt ttaggagagt tagaaaaaat aaaagaagaa       660
     ttagaaaata atcatacctt attgttaaaa gtaggggtaa tagaccatgc atactttaac       720
     aataaggaat ttgataaagc gatgaaaagc atacaagatt tgaaattaga aattatgagg       780
     gctgagaaag aagaagataa agatgtgaag catgttagag cagtcacagt tcacaaaagc       840
     tctgaagaag aagtagagtt tgaaagcaaa gtcgaacagt taaaactata tttagtagaa       900
     gtatatgagg acattgcaaa aggaaacgta ggaatcttcg agattcgaaa gaataaaatt       960
     aaatatttat ggaataaagt ttcaaagcta gttcaggagc taagaaataa atatgtgtca      1020
     aacaaaatgt ttgacgaaga ggttaatgaa ttagattttg atgtgcaaaa tgcaatcagt      1080
     gcgttagaag ccaaaaaagg caccccaatt caacccataa tccacgaaaa aatggataac      1140
     cttccgggtc taccaaaaat tcaagtccca atattttttg gagatgtcaa agattgggat      1200
     ttattcgctg aattattttg cgaccttatt gatagaagag aagatttaac tccttctatc      1260
     aaattcagtt acttaaaatc ctcattacga ggagaagcaa agagcatggt tgctcattta      1320
     ttaacggggt ccgcagataa ttattctacc gcttgggaat tacttaccaa gcgatatgaa      1380
     aataaaagga aaattttttc ggaacaattg aaccgaataa tggaccttcc aaatttaaat      1440
     attgactcat ccaaaagtat caattatttt attgatacaa ttaatgagtc aatacatata      1500
     attaaaagta aggctcaact ttcagaagaa gttgataaaa tctttgcaca cataatacta      1560
     agaaaattta gtaaagaggc acttcaatta tacgaaagcc aaataaaaaa gacaaaagaa      1620
     atacaattac tgactgacgt aatggactac ttagatcagc gacattgttc attatccact      1680
     tcaaataagg aggaaaagaa aattcactct ggttacaatt gtcctatatg caaagtagta      1740
     ggtcatagta ccacgcaatg cacgaaattt aaggcaatgg tcccaagaga aagattggat      1800
     gctgcaagaa agatacagtt atgtttgagg tgtttaagac acacgaatac taataggtgt      1860
     acaagtagca tgaattgtta cttttgtaag aagcctcatc atacaatgtt acatataaat      1920
     acagaaaaag ttaatacagt agtaacaaat gaagaggcct tattagccac agcgataatt      1980
     aaagttaaag caataaaggg gaattatatc aacttaagag ccttaataga tagtggatct      2040
     caaaaaacaa ttatatctga ggaggccgca cagttgctaa atttacccag aatcagaaat      2100
     gagacagaaa taagtggtgt ctcatcagaa aatacttgta ggtcgaaaca caaagttaag      2160
     ctaataataa aacctagaga accaaataaa gaacagttta gggttgaggc catcatatta      2220
     tcaaagttaa tgaaagctct cccagttagt aaagcaaata tagacatggc tcaatggcac      2280
     aatttcactt tagctgatcc acaattttat aaaccaggtc gtgtagacat aataataggt      2340
     gcagacttat atccacacgt actaaaagat gggatagtaa agatagatgg attacttggg      2400
     caaaagactg aatttggttg gattgtatca ggttgtacaa aatcaaaagg taaaacaacg      2460
     atagtagcga caagtattgc aatagaagac ctagatcggt tctgggaatt agaaaacgaa      2520
     gaagaagaag atgtcaaaga gatagaattt tgtgagaaaa attttcagaa tacaacaaaa      2580
     attgattcaa ggggtagata tgttgtaaca attccgttca aagaagaaaa tgaattagga      2640
     gaatcaaagc cacaagctat agctcgattt cttagcttag attaagaaca gactacacaa      2700
     atttcatgaa cgaatacttg cagttaggac atatgatatc tacaaataaa gaaggaaaat      2760
     attatttacc acatcaggca gtgttaagag atagtagtct gacaacgaag ctaagggtag      2820
     tttttgacgc atctgcaaaa acaacaaata agaaaagtct aaatgacatt atgtggacgg      2880
     gaccaagagt tcaaaaagat atatttgaca ttatattaaa atggcgacgc tgggaatatg      2940
     tagtatcagc agatatagaa aaaatgtata ggcaaataaa aatagcaaaa catgaccaag      3000
     aatttcaata tattgtctgg agagattctc caagtaaaaa actaaagaac tttaagctta      3060
     ccacagtcac ttatggtact gcatcagctc cttacttagc cactagagtt cttttagaca      3120
     tagccaataa ttgcaataac gcaacaatta aagaaataat taaaacagat ttttatatgg      3180
     acgatcttat gacaggcgct gagtccatac aaaactgtaa agaaattgtt gaatgtgttt      3240
     ccagtgaact agcaaaagta ggatttaatc tgagaaagtg gatttcaaat aaatcagaaa      3300
     taattgaaga aatagacaga aatgaagaaa ataaggtgtt aagcattgaa gagaatgagt      3360
     caataaaaac attaggtcta cagtgggaac ccctcaaaga tgaattcaaa tttagtttca      3420
     ctgacaacaa tattaaaaca ataaataaaa gaacagtctt atcaacactt gctaaaatat      3480
     atgatccctt agggtggtta gctccagtga ccataatagg gaaactgttt atgcaaaagc      3540
     tatggctaac tgataaaaaa tgggatgaag aactatccaa agaagaaatc aaagaatgga      3600
     aagagtatca agataatttg aaacatctac aaaacctaag aatacctagg tgggtcaaaa      3660
     tacaaaaaga tattgaagta cagtttcatg ggtttgctga tgcttctgaa aaagcctatg      3720
     cagcagtagt atatgccaaa gtaggtaatt cggtaatgat attagctagt aaatgtaaag      3780
     ttaatcccaa gaaaaatcgt aaaactattc ccaaattgga actatgcgct gcccatcttt      3840
     tgacaaaact catttctaaa ataacagaat cgattaaaat taatgttgaa atctttgcgt      3900
     ggagtgattc cactatcaca ttagcttgga tccaaaacgg attgaataaa aataaattca      3960
     ttagaaaaag aacggatgag attaggaaaa tgtcagaaat taaatggaat catgtaaaat      4020
     cagaagacaa tccagcagat atagcatcca gaggaatcaa tacttataaa ttagtagaat      4080
     gcgaaatttg gtggaatggg ccaaagtggt tagccaaatc aaagaaccat tggccaaaag      4140
     aagaagaaaa tgtagatgaa gaaaaaataa gtgtgaacac tatgatagaa aactcagaaa      4200
     agaatataat aggtgaatta atcaaacgat attcttgtat gcaaaaatta caaaaagtag      4260
     tagcatttat tattagattt attaaaatca taaccaaaaa aacgatacaa aagccacaaa      4320
     aatatataac agtagaagaa ttaaataacg ctagaatatt aattattaaa caacaacaag      4380
     catgtcagtt tagaacagaa ataggaaagc tgttgggaaa aaaatattta caaaataaga      4440
     gtaaaataat tagtttgaat ccatttttag atgaaaaggg aatacttcga gtaggaggaa      4500
     gattagagaa agctagtatt ggatttgacg taaagcatcc aattattctt gacaaatgcc      4560
     atttagttaa cttaataatt aaagatgcgc acactatcac tctgcacgga ggtattaatg      4620
     taatgagaaa ctatattcaa agaaaatatt ggataattgg actcagaaac tgtctaaaga      4680
     aatacttacg taattgtatt acatgcacta gatataatca tacacccaca caacaaataa      4740
     tggcaaatct ccctatgaat agaattacaa tgtcataccc attcttgaat acgggaatag      4800
     actacgcagg gccttattat atgaaatgtt ctaagtatcg tgggcaaaaa atgtataaag      4860
     ggtacatagc attatttgtg tgcatggcaa caaaagctat acacttagaa gcagttagtg      4920
     acttaacgtc agatgcattt ttagcggcaa tgagaagatt tattgcaagg agaggaaaat      4980
     gcttaaacat atattctgat aacggtacaa attttgtagg agcagctaaa aaactagaaa      5040
     aagaatttaa gaaaacaatt caagaaaata caaaaatttc ttcaacgtta gaaaaagaac      5100
     aaataaagtg gcattttatc ccggcggcaa gccctcactt tggaggaatc tgggaagcgg      5160
     gagtaaaatc agtaaaatat catttaaaaa gagtaatagg agatagcaat ttaacctttg      5220
     aagaaatgac gacactatta tgtcaaattg aagcagtctt aaactccaga cctctataca      5280
     ctacagggga tgatatcgat aatatcgaag tactaactcc aggacatttt ttaataggta      5340
     gacccacagt aagtgaagtg gagtcaacag gagaagaaaa aataggaaac ctagatagat      5400
     ggaaactgat ccaaaaaatg aggagagatt tttggaataa gtggaaaaat gactatttat      5460
     atacccttca gcaaagaaat aaatggaaaa aagagatgcc aaatttagaa gaagggcaaa      5520
     tagtattaat aaaggatgaa aattgtcacc ctgctagatg gccactaggg ataataaaag      5580
     aagttcacaa aggccaagac aataaagtta gagtcgtaaa agttaaatct caagaagggt      5640
     tagttacacg accaatcaat aaagtatgtc agctaggtga attaaaaaat gaagactcag      5700
     acctaagaag cacaagacaa tctagcagag ggaaaggagg atcaagacta aaagtactaa      5760
     tggcaatgct agtcttagct ctcttctgtc aggtatcaag tgcagaagta acgaaaagcg      5820
     ataagataac aatttcaaaa ttaggtaaca actcagcaat ctatttagat ccaatgggtg      5880
     aagtagaaat agtaacctca tcatgggatc taattattta ctataaccta gattcatatt      5940
     ttgacatgtt aaagaaaggg agtgaattag aagggaaaat gagagcagtg tgtacgaaac      6000
     tacagagttt cgaggaccaa tgtaatataa tactaaataa tacaaaaaga cgaatagcag      6060
     aattagaaga taataacaaa ctatttatac tacaaaataa accaagaacc aaacgtgcac      6120
     ctttcgaatt catgggctca ttatatcact tgctatttgg gataatggat gcagacgatc      6180
     gagaacaaat ggaagaaaac atggtcagtt tattagacaa ccaacataac ataaaaaaat      6240
     tgagtgagaa acagacatca ataatagatt ccacagcaaa tatactcaaa agaaccactg      6300
     aggaaatcaa tattcatttc aatgacatga atatacgtat agacaatatg acagaattgc      6360
     taaaagaatc gtattatgtg tataaggaag caattaattt ctttatgata acaaatcaat      6420
     taaatgcctt aattgaagaa tgtgacaaga ttcaaacagg ggtaataaat atgctaattg      6480
     atataaatca tagcagatta agcccggtta tattgaagcc ttaccaattt ggggaagaaa      6540
     tagccaagat aaaagaaagt ttgtccgaga atttagtctt accagggaaa aggacaggta      6600
     cagaactaaa agaaatatat caattactta caacgaaagg aacctttata gacaacaaaa      6660
     taatagttaa cgccaagatt ccgctattca gcagataccc atctcattta tataaggtta      6720
     tcccaatacc agtctacaat gacgaccaaa tgataatggt acaccaaaga acagaatatt      6780
     tagtgtataa cttcgaaatt gattcttacc acttaatggc cgaagccaca ttaaataaat      6840
     gcaaaaaatg gcaaccaaac aagctcatat gtgaaggtaa ctggccctgg gataatgcca      6900
     acgataacag ctgcgaaata tcaccattca agccaaaccg accggcgaac tgtatctatc      6960
     aaacattagt tcattcaaaa acatactggg ttgaattgga aggtaaaagt aggtggttat      7020
     ttaaagtacc gattaatgaa aagctaagcg tacgatgcaa gggagcacag caagaactaa      7080
     tagaattacc agaacagggt gtgttgaaaa tgaaatcaga ttgcacagct cgatcaggag      7140
     ataagaccat aatagctcat aataatgata ttcacactga aaaatacgag aaaatcgcac      7200
     cctcatacgt aggaaagatt gttgacgttc caaaaatagt ttggaaccca ttagcactat      7260
     caagaataaa tcatacgaaa gaaattgagc atttacaaat agcaatacag caaatgaagg      7320
     agagccatat agaattaaaa gggctccatt ttcatcacat atcaggtcat gcttctatgt      7380
     taataagtat tttgattgca ttaatattaa tcatatatac aataagaaaa tgtaatgtaa      7440
     agaggcgatt aaaagctata acatttcctg gtcccatata atttgaaata taaaaaatat      7500
     acagaaaaat actcgataac ctgcgcgtta tccgacaaaa aaatttattc gataacctgc      7560
     gcgttatcaa actaatatta aaatgaaaac aaaaaagcaa atatattttt ggcccctctg      7620
     gcagaa                                                                 7626
//
ID   BEL-4_DMoj-LTR repbase;    DNA;    INV; 436 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DMoj_;
KW   BEL-4_DMoj-I; BEL-4_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-436
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1260-1260 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 436 BP; 151 A; 78 C; 86 G; 121 T; 0 other;
     tgtttgaaaa catgcgaata ctggatgacc tgcgagtcat cgaacaaaaa ataaaaattt        60
     ttacaaccac aacatttttg ggcccctggc agaatgttca aacatgaaca tacataataa       120
     taaaaataga gacagtactc gaataacctg cgcgttatcc gacacaaagt aataaatatg       180
     tcatccctta gttgcagcga ccaatgcagc gtctaatata tgtaaatgta acgtgagcct       240
     gggcccaaag attcgggaca cttaagtaaa catctgggca cttgtttgtg tgagaaaatg       300
     cacccttcca gtgactggaa gtagttttaa gagtctctgt taggtatata agaactagga       360
     ttttaagcaa taaagagttc agttaagatc ttgaattcgg caaatgtgga gtgtttttca       420
     ttttaacgct ctaaca                                                       436
//
ID   BEL-4_DPer-I repbase;    DNA;    INV; 6419 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DPer_;
KW   BEL-4_DPer-LTR; BEL-4_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6419
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1473-1473 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(474..5801,5764..6336)
FT                 /product="BEL-4_DPer-I_1p"
FT                 /translation="MLSEQIIKLLEAQAAIAREIKKIEAGHLTSDVIQRLG
FT                 DLKNKVTGNNSALLTYGVVDHDYYKRQQYEKMIKNIEDIHKKYVESKNNET
FT                 LTKGKVEKTKLQSVETGTLKEDIEPKIDNSIEKVSEEIVRIVENLRTYLEQ
FT                 TMQRFDQAKMGECRMRKEKIEFLSKRLSSKIEEYYHSYETNDSFDNQIGDL
FT                 EFDIQSMLSNLEVRMQTIAEENSMDTKGATVKKEDIDLPDLPKVEVPTFSG
FT                 EEKEWDGFSQIFCELIHNRDSLSTSLKFNYLKIAIKGEARSMVAHLLTGPL
FT                 ENYNAAWELLTKRYENKRKIFSDQLNRLLDLPMLDHDSAKHIKWFSDSINE
FT                 SIHLIKLKSHLTEEVDVIFAHIVLKKFNKDTLQLYESHIKRTKEIQALPDV
FT                 MEFLEQRYTSLYTSQDKEWKPLKKVVQYGKIKENCPLCKMAGHTIIHCYKF
FT                 KGMSPIDRGQFIKKQRLCTKCCRHDMYKKCFSEILCGICKKPHHTMLHIPY
FT                 EKRENVNTCLTKEQAFLATALIKVRARNGGYQNLRALIDCGSQCTIISEEA
FT                 AQILNLVRKRANTEVSGVSSTDSCTSKYKVTLSVKTRDYNKGPLNIEAIIL
FT                 PKLMKALPLKSFNIDKTKWQDYVLADPNFNKPSRVDVIIGIDLYTHILKDG
FT                 VVKIDGLLGQNTEFGWIISGCTKSKGDKFIVATTIEVGDLERFWELESEKN
FT                 DVEEDVCEEHFLETTRRDENGRYVVKIPFKKEKDLGDSKPQAIARFYSLER
FT                 KLSNNKTLKENYVKFMHEYKNLGHMVESKEDGKYYLPHQGVIRDSSLTTKL
FT                 RVVFDASAKTTNNKSLNDIMWVGPRVQKDIFDIMVKWRKWPFVISADIEKM
FT                 YRQINVDKDDQQYLHIIWRDNPNEKLKDYKLTTVTYGTASAPYLATRVLVA
FT                 IADNCKNQAIREIIKNDFYMDDLMTGADTILDAKKHVKEVTREFNKVGFNL
FT                 RKWITNIPEIIEGIRDDQENKVLTIEENESVKTLGLQWEPVKDEFRFSFHY
FT                 EPIKKNNKRIVLSTLAKIYDPLGWLSPVTLVGKLFIQKLWLADKNWDEELS
FT                 EQDTREWNSFKNSLTELESIRIPRWLNSQHNKSMQIHGFADASEKAYAAVV
FT                 YAKVDSSTIIIASKSKVNPKKNRKTIPKLELCAAHLLAKLIQRVKVAVGSN
FT                 VECYAWSDSTITLAWIKNGDNKDKFIRRRTDEVRKIKEIKWGHVRTEDNPA
FT                 DVASRGISADKLKDFKIWWKGPQWLAKSKEHWPKEEIEEKLVVGTTMVIAK
FT                 NNIFCELLQKYSCMHKLERVIAYVLRFIQIKTKKKEFPSFLTVKEIKSAKV
FT                 LIVKQQQAIQFGSEIASLINKKEIETKNKLLSLNPFLDKDGLLRVGGRLQN
FT                 SNAEFEVKHPLILDKCHLTSLIIKNAHKETLHGGINLMRNYIQRKFWIFGL
FT                 RNCLKKKLKECVTCARYRQNTAEQIMGNLPKHRATMSHPFTNTGVDFAGPY
FT                 HIRCSKNRGQKSYKGYIAVFVCMATKAIHLEVVSDLTSDAFLAALRRFFSR
FT                 RGKCAKIFSDNGTNFVGASRKLDEEYRKALKDNIKVVPILEREQIEWHFIP
FT                 PAGPHFGGIWEAGVKSVKYHLKRVIGDNNLTYEEMATLLCQIEAVLNSRPL
FT                 YTATNDIDDLDVLTPGHFIIGRPIFGPIETISEEKIGNLDRWRLIQKMKRE
FT                 FWIKWKEDYLHTLQQRNKWKIGMQNIKTGQIVLIKDETCHPARWPLGKIEE
FT                 IHKGRDDRVRVVTIKHQDGLIKRPITKICPLAGIESEEQDSGMTPKETRST
FT                 RSSKRLQKRPEVLVVVKGNSNCVYRKIAETRSFWVELERQGSWLFKVPVNT
FT                 NARIQCSNSNQELIDLPQQGILTIIHGCTVRTDDKILVPHHSIQTESYEPI
FT                 SSFYISNISKIPKIVWNPLTVPLINHTEEMDKLRNEIKLLKEGHHDLKGLK
FT                 FHHVSGHAALIIGIIIMIILIIYAIRRIKVARRLQTIALPYPL"
XX
SQ   Sequence 6419 BP; 2479 A; 981 C; 1343 G; 1616 T; 0 other;
     ggctgtattt taatagataa cgaaatatgt atatctattg taattgaaaa ataaaaattt        60
     ttcgcgacgg tggcgttttc gaggccggaa catcgaaaga gaaaaaataa taatccgaaa       120
     catcgaaagt gcttaatggc tagaattgaa aaaaaagtgg caaataactg tgactgtgaa       180
     aaataaatat ataaatgggt ttgtgtgtgc ccactgtgcc agcaacaata actgcagcga       240
     cagaagatca gcgcagcgac ttaagcagag gcaacaccag cagcagcgac agcgatatca       300
     gcagcagcga cgtaagcaga ggcaacacca gcagcagcaa cagcggtatc agcagcagcg       360
     acttcagcgg cagcagtaac aacaacagca gaagcagaat tcatcagcta agtctcatat       420
     ttcaaattgt ttttaagcct aattaagtaa aagtaaaaaa aaattaaact aagatgttgt       480
     cggaacaaat aattaagcta ttagaggctc aagcagcgat agcaagggag attaaaaaga       540
     ttgaagctgg tcatttgacc agcgatgtaa tccaaaggtt aggagacctt aaaaacaaag       600
     ttacaggcaa taattctgca ctgttaacat atggagtagt cgatcatgac tactataaga       660
     gacagcagta cgaaaaaatg attaaaaata tagaggacat acataaaaag tatgtagagt       720
     caaaaaataa tgaaacatta acgaaaggga aggtagaaaa aacaaagtta caatcagtgg       780
     agactggaac tttgaaggaa gacatagagc ccaaaattga caatagcata gaaaaagtat       840
     ctgaggaaat cgtcagaata gtggaaaacc tgaggacata tttagagcaa accatgcaga       900
     ggtttgatca ggctaaaatg ggagagtgta gaatgagaaa ggaaaaaatt gagttcctca       960
     gtaaaagact gagctcaaaa attgaggagt attatcatag ctatgaaaca aacgacagct      1020
     tcgacaatca gatcggagat ttggaatttg atattcaaag catgttgagc aacctagaag      1080
     ttaggatgca aaccatagct gaagaaaaca gcatggatac taaaggggca acggtaaaaa      1140
     aagaagatat cgatttgcct gatcttccga aagtggaagt acccacattc tcgggcgaag      1200
     aaaaagagtg ggacggcttt tcacaaatat tttgtgaatt aattcataac agagatagtc      1260
     tgagtacatc tctaaaattc aattatttga aaatcgcgat aaagggtgag gcacggagta      1320
     tggtagctca ccttttaact gggccgctgg agaattataa tgccgcttgg gaattgctga      1380
     ccaagcggta tgaaaataag cgaaaaattt tttcggatca gctgaatcgt ttactagact      1440
     taccaatgct agatcacgat tcagcgaaac atattaaatg gttttctgat tctataaatg      1500
     agtcaataca tttaattaaa ttaaagtcac atttaacaga agaagttgat gtgattttcg      1560
     cgcacattgt gttgaaaaaa ttcaacaaag ataccttaca attatatgaa agtcatataa      1620
     aaaggacaaa agagatccaa gcattgccag atgtgatgga atttttagaa caacggtaca      1680
     cttctcttta cacgtcgcag gataaagagt ggaaaccgtt gaaaaaagta gtgcaatatg      1740
     gtaaaataaa agaaaattgt ccgttatgta aaatggcagg acataccata attcactgct      1800
     ataagtttaa gggaatgagt ccgatagata gaggccagtt tattaaaaaa cagcgccttt      1860
     gcacaaaatg ctgtaggcat gatatgtata agaaatgctt ttctgaaatt ttatgtggga      1920
     tttgtaaaaa acctcatcat acgatgctcc atattcccta cgaaaagagg gaaaatgtta      1980
     acacttgctt gacaaaagaa caagcgttct tagccacagc acttataaaa gtaagggcaa      2040
     ggaatggtgg ctatcaaaac cttagagctc tcattgattg tgggtcgcaa tgtaccataa      2100
     tttcagaaga agctgcgcaa atattaaact tagtacgaaa aagagcgaac accgaggtaa      2160
     gtggagtgtc atctacagac tcttgcactt caaagtacaa agttacttta tcggtaaaaa      2220
     ctcgtgatta taataaaggt cctctaaata ttgaagcaat tattcttccg aaactgatga      2280
     aagctttacc attaaagtct ttcaatattg ataaaactaa gtggcaagat tatgtgttgg      2340
     cagaccctaa ctttaacaaa ccaagtaggg tagatgtaat aattgggata gatttgtata      2400
     cccatatttt aaaagacgga gtagtaaaaa tagacggact acttggacaa aatacagaat      2460
     tcggatggat tatatccggt tgcaccaaat caaaaggtga taaatttatt gtggcgacaa      2520
     caattgaagt tggggactta gagcggttct gggaattgga aagtgaaaag aatgacgtag      2580
     aagaagatgt gtgcgaggag catttcttgg aaacaacaag aagagatgag aatggtaggt      2640
     atgtggttaa aataccattt aaaaaagaaa aggatctagg agattcaaaa ccccaagcta      2700
     tagcgcgatt ttatagttta gaaagaaagc tcagcaataa taaaacatta aaagaaaatt      2760
     atgtaaagtt catgcatgaa tataaaaact taggacatat ggtagagtcc aaagaagatg      2820
     ggaaatatta tttaccccat caaggagtca taagagattc cagtctaacg acaaagctga      2880
     gggtggtttt cgatgcttca gcaaaaacca caaacaataa aagtttaaat gatatcatgt      2940
     gggttggacc aagggtccaa aaagatatct tcgatattat ggtgaaatgg cgtaaatggc      3000
     catttgtaat atctgcggac attgaaaaaa tgtaccggca aattaatgtt gataaagacg      3060
     atcaacaata tttgcatata atttggagag ataatccaaa cgaaaagtta aaagattata      3120
     aacttacaac cgttacgtac ggtacagctt cagcacccta cttagcaacc agggtgcttg      3180
     ttgcaatagc agataattgc aaaaatcaag caattaggga aatcataaag aatgattttt      3240
     atatggacga cctgatgaca ggtgccgaca cgatactgga tgctaaaaag catgtaaagg      3300
     aagttacccg ggagtttaat aaggttgggt ttaacttaag aaagtggata acaaatatcc      3360
     cagaaattat agaaggcatt agagatgacc aagaaaataa agtattaacc attgaggaga      3420
     atgaatccgt caaaacatta ggactacaat gggaaccggt taaagacgag tttaggttca      3480
     gtttccacta tgaaccaatt aagaaaaata acaaaagaat agtattatct accttagcca      3540
     agatatatga ccccttaggc tggttgtctc cagtgacact tgtcggaaaa ttgtttattc      3600
     aaaaactttg gctagcagac aaaaattggg atgaagaatt atcagaacag gatactcggg      3660
     aatggaattc gtttaaaaat agtttaacag agttagagag cattcggata ccgagatggc      3720
     taaattctca gcacaataag tcgatgcaaa ttcatgggtt tgccgatgca tccgaaaagg      3780
     cttatgctgc cgtagtgtat gccaaggtag atagttctac aattataata gccagcaaaa      3840
     gcaaagttaa tccaaagaag aatcggaaaa ctattccaaa attagaactt tgtgcagcac      3900
     atcttctggc aaaattaatt caacgggtga aagtagcggt tggaagtaat gtagagtgtt      3960
     atgcctggag tgattctact attactctag cctggataaa gaatggagac aataaagaca      4020
     agtttatcag gcgtcgaact gacgaagtaa gaaagattaa ggaaattaaa tggggacacg      4080
     ttagaactga agacaatcca gcagatgtag catcaagggg cattagtgca gataagctaa      4140
     aagattttaa gatttggtgg aaagggcctc aatggttggc gaaatctaag gaacattggc      4200
     caaaagagga aattgaagaa aaattagttg ttggcacaac aatggtaata gcaaaaaata      4260
     acattttttg tgaattatta caaaaatatt cgtgtatgca taaactagaa agagtcattg      4320
     catatgtatt gaggtttatt caaatcaaaa ccaaaaagaa agaatttcct tcatttttga      4380
     cagtgaagga gattaagagc gccaaagtat taatagtaaa acaacaacaa gctatccaat      4440
     tcggttccga aatagctagc ctaattaata aaaaggaaat agaaacaaaa aataaactat      4500
     taagcttaaa tccgttctta gataaagacg gattgttacg agttggaggt agattgcaaa      4560
     actccaacgc ggaatttgag gttaaacatc ccttgatttt agataagtgt cacttgacgt      4620
     ctttaattat caagaatgca cataaagaaa cattgcacgg tggaattaat ctgatgcgaa      4680
     actatatcca gcgaaagttt tggatatttg ggctaagaaa ttgcttaaag aaaaaactta      4740
     aagagtgtgt cacctgtgct aggtatcgac agaatactgc agaacaaatt atgggaaatc      4800
     tgccgaaaca cagagctaca atgtcgcacc cgtttacaaa tacaggtgta gacttcgccg      4860
     ggccttacca tatccgatgc tctaaaaacc gggggcagaa atcctataag ggatatattg      4920
     ccgtattcgt atgcatggcg acaaaagcta ttcatttgga agtagtcagc gatcttactt      4980
     cagatgcatt tctagctgca cttagaagat ttttttcaag aagaggaaaa tgtgcaaaaa      5040
     ttttttccga taatggaacc aactttgtgg gagcttcgcg caaattagac gaggaatacc      5100
     gaaaagccct caaagacaac ataaaagtgg ttccaatatt agaaagagaa cagatcgagt      5160
     ggcattttat tcccccggca ggacctcact tcggaggtat ttgggaagct ggggtaaaat      5220
     cagtgaaata tcacttaaaa agggtaattg gggacaataa tttaacctat gaggaaatgg      5280
     caactctatt atgtcaaatt gaagcggtac taaattcacg ccctttgtat acagctacaa      5340
     atgatattga cgatctggat gtattaacac caggtcattt tataattgga aggccaatat      5400
     ttggcccgat tgagacaatt tcagaggaaa aaatcgggaa tctggataga tggagattaa      5460
     ttcagaaaat gaaaagagaa ttttggatta aatggaaaga agattatttg cacacactgc      5520
     aacaaagaaa taaatggaaa ataggaatgc agaatattaa aacaggacag attgtattaa      5580
     taaaagatga aacctgtcac ccagctagat ggcccttggg aaaaatagaa gaaatacata      5640
     aaggtaggga cgatagagtc agagtagtaa ctataaaaca tcaagacggg ttgataaaac      5700
     gacctataac taaaatttgt ccattagctg gaattgagtc agaagagcaa gactcaggaa      5760
     tgactccaaa agagaccaga agtactcgta gtagtaaaag gtaattcaaa ttgcgtgtat      5820
     aggaagatag cagagacaag gtcattttgg gtcgaattag aaaggcaggg tagttggctc      5880
     ttcaaagttc cagtaaacac taatgctaga attcaatgta gtaactcaaa tcaagaacta      5940
     attgatcttc cgcaacaagg aattttaaca ataatacatg gttgtactgt gcgaaccgat      6000
     gataaaatac tagtacctca tcacagtatt caaacagaaa gctacgagcc aatttcatcc      6060
     ttttatataa gtaatataag caaaatacca aaaattgttt ggaatccatt aacagtacca      6120
     ttaattaacc atacagaaga aatggataag ttaagaaacg aaataaaatt gttaaaagaa      6180
     ggtcatcatg acttaaaagg acttaagttc catcatgtat ctggacatgc ggccttgatt      6240
     atcggaatca taataatgat aatattaata atctatgcca taagaagaat taaagtagca      6300
     cgaagactgc aaacgatagc acttccctac ccactgtaat tgactgtaaa tgattatctg      6360
     tacttgtaat tatagctata aagaaaatgt acacaaaaag gttcacaaga atcaaaata       6419
//
ID   BEL-4_DPer-LTR repbase;    DNA;    INV; 660 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.08, Created)
DT   01-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DPer_;
KW   BEL-4_DPer-I; BEL-4_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-660
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1474-1474 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 660 BP; 243 A; 134 C; 101 G; 181 T; 1 other;
     tgttcaaaca tgaacatatt atcgtcaata caatgccact ttcggcccct tgcagaatgt        60
     tcaaacataa acakattatt gtacacattc actcatgtat acaacaccga tctctaaaga       120
     aatcacataa agtagacaag ttatgactgc actggtgtaa acagagatct gtaacccatt       180
     aaaagatacg acaacaaaac acaagtggag aaaacactta acaaatgcgg tcctaaaata       240
     aaactaatgt aagcatgcac tcaaatagac accctcagta aagtgtatcc tctgcgtagg       300
     tctaacgata attatagact accaaattgt acctcctacc tcattgtcaa atcacatata       360
     aggctctgat tttaagaata aaatttagtt tgaatttaca actcaactcg caaatgtcta       420
     gacttttctt ttaaggtctt aacattttgg tccttcgaga ctctccgttg tttcccccct       480
     gtggtaagag cacggagtta aaccagctcc cttgagactg aacaagtgtc tagttcactg       540
     acagctaaag gtagcaaaat aaaaaacttt gatttccctc ctataggaag gaacagagta       600
     taaaataaat taatgaaacg gaagtttcaa ttaataattt tgaaaaatac gagctggaca       660
//
ID   BEL-4_DPse-I repbase;    DNA;    INV; 6141 BP.
XX
AC   .
XX
DT   25-MAR-2011 (Rel. 17.07, Created)
DT   25-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DPse_;
KW   BEL-4_DPse-LTR; BEL-4_DPse-I.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-6141
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1315-1315 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5174-5749] - Integrase core
CC   'CTCTT' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           868..2163
FT                 /product="BEL-4_DPse-I_1p"
FT                 /translation="MSEKEREIVTREGGSKEGGGPKVLQKLATAMQRHDRV
FT                 MGDLRRVRTAFEEKTISFDSLQIKCRLELIENYCEKLMDIQADVDCLNPNN
FT                 DLRASVEDMCVTTKALYMSALKEPETQRIQRRDRSSQHHSSHLPKMNLPKF
FT                 SGKHAEFKNFISLFESLVHNDPILTNVEKFNHLLSCLVDDALGTVKAFQIS
FT                 AENYEKALDSLKEVYDKKYLIFSDTVSQLFDIPSTTKASASCLRSLIDTVS
FT                 AIYSSLQSLGSEKDINSAMLIHIALSKVDPTTKSRFEEQLDYDKLPSWSEC
FT                 AAQLNRRYQHLAAEESTRNKGKTKQETSKGPTKSSFSCAKTDRRADSKCSY
FT                 CHAGNHTISNCQSFSALPVLQRFDITKQLRLCINCLKPGHTVTRCKTAKCR
FT                 VCSKPHNTLLHRYGVEPQQNGPSSVPVEHSSSSEPQTA"
FT   CDS           4544..6109
FT                 /product="BEL-4_DPse-I_2p"
FT                 /translation="MERSENKKCLATHSVAKCQANDFIELIERCSSFEKLL
FT                 RIMAYVNRFLQGSKRSREVVLSAKELKVSFLRLVEVVQRHELGPEFHKLAR
FT                 SEILSPHLQRLNPFIHTSELDGVTLRLIRVGGRLLNAEIPYDAKFPLLLSQ
FT                 KSQFVTLYLRNLHRTHYHAGAKVMVSLLRQQIWLINAREACTRILRNCVHC
FT                 FRYKPVLQGQIMGNLPADRVRRARPFLICGVDFCGPFYVSLKIRGRPPIKT
FT                 YVAVFVCFVSKAVHLELVADLSTDSFLSVFKRFIGRRGLPEKVYSDNATNF
FT                 VGASKVLNELHQAYQRDQDRLKAYAARQGVEWCFIPPRAPHFGGLWEAAVK
FT                 SAKQRLVRGVGNAKLTADELCTHLVEVEALLNSRPIASPGNDPSDGEALTP
FT                 GHLLIGQPLLSLPPESDQDDRCSRGSFAYLKRWRMLSALKQQFWQGWSKDY
FT                 LVSLQKRHQWATKGPDLDIGCLVLVHEDNTPPQKWTTGRVVAAIKGEDGRV
FT                 RVAEVRTPTGVIKRPIHKLAKLPIDG"
XX
SQ   Sequence 6141 BP; 1639 A; 1429 C; 1525 G; 1544 T; 4 other;
     ttggcgcccg agcagggaca tcggcatcca gcatttcgtg gaaattcgca cgacaaacca        60
     gtgacctaca gtgcatcttc gttgtctcgg cacaagtcat tggttttttt tgttctgttg       120
     cgaatagagc tctagctggc tggttttgtg cgacaaattg gattcatctt taatcaacaa       180
     aaagaaaagg aaagtgttcg gctaatctat gccgaattcc aggtatttag tgcgaaaaaa       240
     ctgagtgcta gaaccaagcc accattttgt gcgctgtgtt tctctatttg gccactggtc       300
     tcaatttttg gcacctcgtt gaattggaat accaattaaa taaaacacaa agcaataaaa       360
     taaaccaaag tgaacagcca gcaacataaa atatttatta tatgcggaat attggtgaat       420
     tgaagaaaag tgcaaattga tgagggttta cggtacttgc taatcagacg ctccggtcat       480
     tgccgctgtt ttcaattctc ttttgcgaag taccgcttat tggtgctgcc tttacttcgg       540
     taacgctatc gttgcgccaa attgtgcata atttggctgc gtttggttgt gtgcattggc       600
     agcataattt gtgtttgttt cgctgcgtta accctttgat gccgatacat agttttttgg       660
     aaaacatttg atgtgtacat tggcatgata attgtcaact tttccgttgc tgccgttgac       720
     catttatcta ttgaagccga tacagatttt tgtggaaatt tcgcgttctt tcatagtttt       780
     ttgcataccc tacagtattt cggttaacca ttgtctaaac ccagtgcatt actttccgac       840
     cctcttgaat taagagaaag cgccagaatg agtgaaaagg aaagggaaat tgttaccagg       900
     gaaggaggtt cgaaagaagg agggggtcca aaagtcctgc aaaagttagc aacagcaatg       960
     caaagacacg atagggtgat gggcgatcta aggcgtgtgc gaacggcctt tgaggaaaaa      1020
     actatttcgt tcgactctct tcaaattaaa tgcagactcg agctgatcga aaattattgt      1080
     gaaaagttga tggatataca ggcagacgtg gattgtttaa atcccaacaa cgatctacga      1140
     gcatcggtcg aggatatgtg tgttaccaca aaggctctgt acatgtctgc acttaaagaa      1200
     cccgaaactc agcgaataca gaggagggat aggagtagcc agcatcattc atcacatctg      1260
     cctaaaatga atctccccaa gtttagtgga aaacatgctg aatttaaaaa ctttataagc      1320
     cttttcgaga gtttggtgca taacgaccca atattaacaa atgtggaaaa attcaaccac      1380
     ttactgtcgt gtctcgttga cgatgcattg ggaacagtga aggcgtttca gatctctgca      1440
     gaaaattatg agaaggctct tgatagtttg aaggaggttt acgacaaaaa atatttgatc      1500
     ttttctgata ctgtttcgca gttgtttgac attcccagca caacaaaagc ttctgcttca      1560
     tgccttaggt ccctcattga cacggtgtca gccatctatt cctctctgca gtcgttagga      1620
     agtgaaaaag acataaatag cgcgatgcta attcacatag cgctgtctaa agtagatccc      1680
     acaacgaagt ctcggttcga agagcaactg gattacgata aactaccgtc ttggtccgag      1740
     tgcgcagccc agctgaatcg gcgctatcag catctagctg ccgaagagtc aacacggaat      1800
     aagggaaaaa ctaaacaaga gacaagtaaa ggacccacta aatcgtcatt ttcatgtgca      1860
     aagacggata ggcgagctga ttcgaaatgt agctattgcc acgcggggaa tcataccata      1920
     agcaattgtc aatcgtttag tgctcttcct gttcttcaac ggttcgatat caccaagcaa      1980
     ctccgactgt gcataaattg tttgaagcca ggtcatacag tgacgaggtg caagacagca      2040
     aaatgtcgag tgtgctctaa gccccataac actctgcttc atcgatacgg ggttgagcca      2100
     cagcaaaatg ggcctagttc tgtgccagta gaacattcgt catcgtctga gcctcagaca      2160
     gcttagccat tctagtcacg tttgctgagc tagacaaggt accatacctc gctacctggc      2220
     ttcccacgcg taaaggcgtc cagatccggg ttcgcagacg catcaggtga gcgcacggac      2280
     gctctctaca tcgtaccagc gatggcaaat attttgtgtc caaggttctt accgcagagc      2340
     ctcgggtagc tcctctcaaa acgagatcga ttccaaggct cgattgcgcg taccacccct      2400
     gttgtccact ttatgggaga aaaccgctcc cggacaattt catgatcgaa ggttgaactt      2460
     ctggtcggac tcccaagtta acttgtactg gccggaaagg gatccagcca cgctcacaac      2520
     gtttgtggcc aatagggtcg ctgagatcca ggaatcttca gcggtgtgac ttggcggcac      2580
     gtcctgttgg gcaaaactca gccgatttag ggccacatgg aacatactag acggtgtaac      2640
     gtgctcatgt gaactggcgg accccaattt ctgctcagga atttcgagga gcctaccagg      2700
     tcatcaggtt gagttgtctc cgaaatggaa cggcggaaac cgaagtgttt ggcaacacgt      2760
     tcagtggcaa agtgtcagat cattgatctt atcgagttga ttgaaaaatt ctcttctttt      2820
     gagaaattgc ttcggattac ggcatacgtc aaccggttcc tacaaggaag caagcgtact      2880
     cgagagtcgt tgcgtcagcc gaagaactta aggttcattt ctaaggctgg tagaagtaat      2940
     ccaaggacac gagtcaggac cggaattcca caagctagcg aggtcggaga tcccgtcact      3000
     gcatcttcaa caactaacsc gttcaacata cgagtgaact cgacggggta ctcttcgatt      3060
     gattcgagtg gtaggaaggt tgctcaacgc agaaattccg tcgacgccaa atctcctctg      3120
     ctgctgtcgc aaaagtcgca gttcgtgacg ctttatcttc gcaatttgca tcggactctc      3180
     taccgtgcag cgccaaagtc atgtttcgtc gctaatgcag cagacatggc taatcaatgc      3240
     tcgagaggca tgtacaagaa tcctgagaaa tcgtgcgcac tgcttccgat acgagccagt      3300
     cctacaggga cagatcatgg saaacttgcc agctgataga gttcgaagag ctcggccctt      3360
     tttgatttgt ggagtagatt tctgcgggcc attctacgtg tctctcaaga ttcgcggcag      3420
     gccccttttc aggacatccg tagccgtctt cgtctacatt gtatcaaaaa ctgttcacct      3480
     ggagcctgta gcagatccgt ccactgatag tttgttatct gtttttaaaa ttttcatcgg      3540
     gagaagggcc ttccggagaa ggtttacagc gacaaggcca ccaacttcgt gggcgtggca      3600
     aggtgctgaa cgagctgcat caagcgtacc agctgctgnc cgttagatcg gattaggtgc      3660
     tatttggtaa gcagctaatc ggctgggttc tgctccgagc atgatccttc gtcgtctgtt      3720
     aaaacgctcg gaattagatg gaatccgcaa aatgatttgt tccattatca tttagatgac      3780
     tcatttgatt cattgacccc tacaaagcga aacatcttgt cagttgcgtc ccgattgttc      3840
     gacccattag ggttattatg tcccttaata actagggcaa aaatattgct gcagcaattg      3900
     tggcggcaaa agttggattg ggacgagtcg gttcccatga gtttgcacac gagttggaac      3960
     cacttcaagc aaaatttgtt tgaattagac aagataacca tacctcgcta cattggcctt      4020
     cccacgcata aaagcgttca gattcacgga ttcgcagacg catcaggtga agcgtacgga      4080
     tgctgcattt acatccgtac cagtgatggt aaaaatgtcg tgtctaagct tcttaccgca      4140
     aagtctcgag tagctcctct caaaacgaaa tcgattccaa gactcgaatt gtgcgcagca      4200
     ctcctgttat ccactttatg ggctcaagta aaaccgctcc tggacaaatt catgatcgaa      4260
     agtgtgaact tttggtcgga ctcccaagtc accttgtact ggctggaaag ggatccagcc      4320
     acgctagcaa cgtttgtggc caatagggtt gctgaaatcc aggaatcttc aagcggtgtg      4380
     acttggcggc acgttcctac tgagcaaaac ccagccgatt tagtgtcacg tggaacagac      4440
     gtagacggtg taacgtgctc attgtggact gatggtcccc aatttctgct caggaattat      4500
     gaggagtckg ccatgtctac atcaggttga gttgtcccca gaaatggaac ggtcggaaaa      4560
     caagaagtgt ttggcaacac attcagtggc aaagtgtcag gccaatgatt tcatcgagtt      4620
     gattgaaaga tgctcttctt ttgagaaatt gcttcggatt atggcatatg tcaaccggtt      4680
     cctacaagga agcaagcgta gtcgagaggt cgttctgtca gccaaagaac ttaaggtctc      4740
     atttctaagg ctggtagaag tagtccaaag acacgagttg ggaccagaat tccacaagct      4800
     agcgaggtcg gaaatcctgt caccgcatct tcaacgacta aacccgttca tacatacgag      4860
     cgaactcgac ggagtaacgc ttcgactgat tcgagtggga ggaaggttgc tcaacgcaga      4920
     aattccgtac gacgccaaat ttcctctgct gctgtcgcaa aagtcgcagt tcgtgacgct      4980
     ttatcttcgc aatttgcatc ggactcacta ccatgcaggc gccaaagtca tggtttcgtt      5040
     gctaaggcag cagatatggc taatcaatgc tcgagaagca tgtacaagga tcctgagaaa      5100
     ttgtgtgcac tgcttccgat acaagccagt cctacaggga cagatcatgg gaaacctgcc      5160
     agctgataga gtgcgaagag ctcggccctt tttgatttgt ggggtagatt tctgcggccc      5220
     attctacgtg tctctcaaga ttcgcggcag gccccctatt aagacatatg tagccgtctt      5280
     cgtctgcttt gtatcaaaag ctgttcacct ggagcttgta gcagatttgt ccactgatag      5340
     ttttttatct gtttttaaaa ggttcatcgg gagaagaggc cttccggaga aggtgtacag      5400
     cgacaacgcc accaacttcg tgggcgcgag caaggtgctg aacgagcttc atcaagcgta      5460
     ccagagggac caggaccggc tcaaggcgta cgcagcgcgc caaggcgtcg agtggtgttt      5520
     cataccaccg agagcaccac acttcggcgg attgtgggag gcagccgtca aatcagccaa      5580
     gcagaggttg gtacgcggag tgggcaacgc caagctcacc gcggacgagc tgtgcaccca      5640
     cctggtagag gtagaggctc ttctcaactc ccggccaatc gcgtccccag gcaacgatcc      5700
     cagcgatgga gaagcgctaa cgccagggca cctgctgatc gggcagccgc ttctttcgct      5760
     gccgcccgaa tcagatcaag acgacagatg cagcagggga agcttcgcgt acttgaagcg      5820
     gtggcgaatg ctgtcagcgc tcaagcagca gttttggcag ggctggtcca aggactacct      5880
     ggtcagcctg cagaagcgtc accagtgggc taccaaaggg ccagacttgg acattggctg      5940
     tctggtgctc gtccacgagg acaacacacc gccacagaag tggaccacag gacgagtggt      6000
     ggccgcaatc aagggagaag atgggagagt gcgcgtcgcc gaggtgcgaa cacccacggg      6060
     cgtaattaaa cgccccatac acaaactggc aaaactgcca atagacggtt gaagcaccgg      6120
     aggtcttcaa cggggccgga a                                                6141
//
ID   BEL-4_DPse-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   25-MAR-2011 (Rel. 17.07, Created)
DT   25-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DPse_;
KW   BEL-4_DPse-I; BEL-4_DPse-LTR.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-300
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1316-1316 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 300 BP; 73 A; 69 C; 69 G; 89 T; 0 other;
     tgttgcagca gacgatctta attaccctat cttagcgtgt gcgatgttgt gagcagagct        60
     tttgctctca cacgccgcgc tcttgtactg ctctctgcgc atgcaagatc ggctcggcgg       120
     tggagtcggg gagttattgc tatctctggc tgcgaccagt ccaataaatg ctttgaagtc       180
     gagcacttgt tttatttggt cataaattac ctgacaattt aaagtaaaaa accgcaacta       240
     gagcccgctg gaccggagtc atcataacgt ttaatttgga aaaactcttc cgaattttca       300
//
ID   BEL-4_DRh-I repbase;    DNA;    INV; 5794 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DRh_;
KW   BEL-4_DRh-LTR; BEL-4_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5794
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1553-1553 (2012).
XX
DR   [1] (Consensus)
XX
CC   'ACTG' target site duplication
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           609..4445
FT                 /product="BEL-4_DRh-I_1p"
FT                 /translation="MDAYCALAEDFDRLGPENTTPTAAAGNADPELRVNMP
FT                 QMSVPKFSGACVDWPGYYDAFTSLIHNNNNLSNVQRLHFLKESLPISRDND
FT                 IRQMQLTDVNYAVAWGMMIKRYNNPRLVFSHHMNAIYALPRLQKDSTDSLR
FT                 SMLSTVNVCLAAFRRVQALDGESQHWLAHYVASKLPKETHNAWEHHQGSSS
FT                 TVPSYRDLESFLNDRLVIMDAIENRSSSYDSNAGPGSTDPTKRVRVHNAQE
FT                 HSRRSNNPCYHCGGDHILRRCPPFLALDCYKRKDIVSRAKLCVNCLSKSHA
FT                 LSRCTSNQSCQVCGQRHHTLLHFPVPAQNQPSNHAQSHPARPPTPQFVTPA
FT                 SRETVSAHNIQSRSDQNPHASYRCHSATSSNLSSKNLLLATARIMVRNPTN
FT                 GLQAVINALVDQGSEATIVSEHVVQSLHLKRSAARASIFGVGQGGGRRCKY
FT                 TVNFEINSIINSNFSLDVGSAYVLNSVTSCLPSLSFSPKRWDHIQGLPLAD
FT                 PNYYRSKRVDLILGADLLAQIMLPDTKIGLPDEPIAQNTRLGWILSGRAEG
FT                 VTKSSELRCHRVTLDTESLLKRFCEVESVPDRSTETEEDTWCETFFQETHA
FT                 RRSGGRYVVRLPFKTYLDPTMVLGRSHQMALNRFMQLERRLSNNPERWNKY
FT                 VEEIEEYFSLEQIAPAVGSESSLMKRASSNMHVASCVLPHHAVFKEELHST
FT                 KQRIVFDASSRTSNGRSLNDILCIGPTLQNDMSSVILNWRKYRFVFTADIQ
FT                 KMYRCIDVHPEDAQYQRILWRAADGAINVYALSTLTFGTASAPFTAIRVIQ
FT                 QLAKDEQLSFPKAEEVLMNEIYVDDILSGGHTIDEAEDKRFQVSGAIKSAR
FT                 MELRKWASNDSRLLLSIPSEYHCTQTLLSWDTTDPIKALGMYWLPNKDCFK
FT                 YQINFEMPVSSTKRMILSSIARLFDPLGLIAPVIISGKLILKEVTMAKTKQ
FT                 ADGTQTVLDWDDAVPDNIAERWRVFRDNLLRIGEISIDRWIHYTPSSISSV
FT                 QMHAFCDGSSTSYAAAVYLRVEHQDGRCYTSLMAAKSKVTPAKPLTIPRTE
FT                 LSGAVLAIKLVRWLTMAKCLSSFPVQTFYWTDATIVLHWLHGDVNRWKTFV
FT                 ANRVAFVLDHSSPVQWRHVGTTENPADCATRGLTPIELKDFELWWRGPSTD
FT                 FGQIGINDAALEAKVAKMRVHHAVPQPSFLERFSTLSQALRVTGYIMRFKD
FT                 NASGKVDRRLGPLIIEELDYALLAVVRIVRNRLVCSKELQTVALAEQIIKF
FT                 VADIRGRHLAGEGTTSPF"
XX
SQ   Sequence 5794 BP; 1476 A; 1453 C; 1479 G; 1382 T; 4 other;
     actgaacatg gtggcccatg aggggaacct gcaaagcaaa atacagttcg taaaaggttc        60
     attagaattc cgttaaataa attccgttag atcgcggctg cgtcagatcg acacgccggc       120
     tcaacgaagc agtgcaaaga agacgtcgat acataagcgc agcaacggca acccggactt       180
     tgcaaagcgc cnttatctct tcccttcctc tttgtggtgt ggttctggta tgcaagctga       240
     gtgagttacc aagttgtgtg cgagacaagt attacagatt tatctattac ataattattc       300
     ggggtggtga gttgcgcagg ccttagtcgt acacttggca acatgaaacc tgagtcggat       360
     gttcagattt ggacaagttg gtgaatctgc aatcggatcg tcaccaagct cttaggtctg       420
     tgttacagaa ttttaggaaa gattcgcagg cgaggaaaac taaaatttat ctcaaaaaaa       480
     ggctggacca agtggaggaa ttacggaacg cttttcggga gacgcactcg gtgatcgtta       540
     atttggatgg atttagtgat tcaagttacg ccacgaagaa tttccaatca gaattcgagg       600
     agcgttatat ggacgcttat tgcgctctcg ccgaagactt cgacaggctt ggaccagaaa       660
     atactacgcc gacagcagcc gccgggaacg ccgacccgga gttgcgagta aacatgccgc       720
     aaatgtcggt gcctaaattt tccggtgcgt gtgtggactg gccaggctac tacgacgcct       780
     tcacaagtct aattcataac aacaacaatc tgagcaatgt ccaaagattg cactttctca       840
     aggagtcgtt gcccatcagt cgtgataatg acattcgtca gatgcagctc acggatgtaa       900
     attatgcagt ggcttgggga atgatgatca aaaggtacaa caatcctcgc ctcgttttct       960
     cacaccatat gaacgcaatc tatgcgttgc ccagattgca aaaggacagc accgactctc      1020
     tgcggtcgat gctaagcacg gtcaatgttt gcctagctgc cttccgccgc gttcaagcct      1080
     tggacgggga atcgcagcac tggttggcgc attacgtagc atcgaagctg cccaaggaga      1140
     cccacaacgc ttgggagcac caccaaggaa gctcttcaac ggttccatct tatagggatt      1200
     tggaatcatt tctgaacgat cggctagtca taatggatgc gattgagaat cgaagctcgt      1260
     cgtacgactc caatgctggc ccaggttcaa cagacccgac caaacgcgtg cgagtgcata      1320
     atgcacagga gcactcaagg cgttcgaata acccttgtta tcactgtggc ggcgaccaca      1380
     tcctgcgtcg ctgtccaccg ttcttggcgc tggactgtta caagcgcaag gatatagtca      1440
     gcagggctaa attatgcgtc aattgcttga gcaagtcgca tgccctgtct cgctgcacca      1500
     gcaaccagag ctgccaggtt tgcggtcagc gccatcatac gttgctacat ttcccggttc      1560
     cggcgcagaa ccagccttcg aaccacgctc aatcgcatcc tgcccggccg ccgacaccgc      1620
     agtttgtgac gccggcatcc agggaaacag tgtctgcaca caacatacag tccaggtcgg      1680
     atcaaaatcc gcacgcatct tacagatgtc attcggcgac gtcatccaac ctttcctcga      1740
     aaaatttact tctcgctacg gctcgtatta tggtacgaaa cccgaccaac ggcctgcaag      1800
     cagtaataaa cgctctcgtc gatcaaggat ctgaggcaac catagtatct gaacacgttg      1860
     ttcagtccct tcatttgaaa cgatctgccg ccagagcatc catttttggg gtaggncaag      1920
     ggggcggtcg tcgttgcaag tatacggtca actttgaaat caacagtatt attaattcca      1980
     atttttcttt agatgttggt tccgcatatg tgctcaattc cgtaacatcc tgcctcccca      2040
     gtctcagctt ctcgccgaag cgatgggatc acatccaagg gctcccgttg gcagatccaa      2100
     attattaccg atcgaaacga gttgatctca tcttgggagc ggacctgttg gcacaaatca      2160
     tgctgccaga cacgaagatt ggattgcccg acgagcccat agctcaaaat acccgtttgg      2220
     gatggatact atccgggcga gcagaaggag ttacaaaatc ttccgaacta cgctgtcatc      2280
     gagtaacttt ggacacggag tcattgctca aacgattttg tgaagtcgag tcggttcctg      2340
     atcgctctac ggaaacggag gaggatacgt ggtgcgaaac atttttccaa gaaacgcacg      2400
     cgcgtcgatc gggtggccgc tacgtagtac gattgccctt taaaacatat ttggatccaa      2460
     caatggtatt ggggagatct catcaaatgg cgctgaatcg gtttatgcaa ttggaaaggc      2520
     gtctgtcgaa caacccggag cggtggaaca aatatgtgga ggagatcgag gagtactttt      2580
     cgcttgagca aatagcgcct gctgtgggca gtgagagcag tctaatgaag cgcgcatctt      2640
     cgaatatgca tgtagcttca tgcgtgctcc cgcaccatgc ggtcttcaag gaggaactcc      2700
     attcgaccaa acaaagaatc gtattcgatg cctcctcaag aactagtaac gggagatcat      2760
     tgaacgacat actttgtatc ggacccactt tgcagaacga catgtcatcg gttatactca      2820
     attggcggaa atatcgtttt gttttcacgg cggatataca gaagatgtat cgctgtatag      2880
     acgttcaccc agaagacgcc cagtatcagc ggattttatg gcgggcggcg gatggagcca      2940
     tcaatgttta tgcgttatcg acattgacct tcgggacggc ttcagcgccg ttcacagcta      3000
     tcagagtcat tcaacagctg gcaaaggatg agcagctttc atttcctaag gccgaggagg      3060
     tgctgatgaa cgaaatatat gtagacgaca ttctttctgg aggacatact atagatgagg      3120
     cagaggataa acggtttcag gtatcgggtg ctataaaatc cgcgcgcatg gagttgcgaa      3180
     agtgggccag caacgattcg agacttttgc tctcgattcc gtcagagtac cattgcactc      3240
     agaccctgtt aagttgggac actacagatc ctataaaggc tttaggaatg tattggctcc      3300
     caaacaagga ctgttttaag taccagatca acttcgagat gccagtcagc tccacgaaga      3360
     ggatgatcct atccagtata gcaaggttgt ttgacccgct gggtctcatt gcgccggtca      3420
     tcatctcggg aaagcttata ttgaaggagg ttaccatggc caagacaaag caggcagatg      3480
     gcacgcagac ggttctggac tgggacgacg cggttcctga taatatcgca gagcgatggc      3540
     gagtatttcg agacaacttg ctgaggatcg gcgagataag catagatcgg tggatccatt      3600
     acaccccgtc ttcgatatcc tcagtgcaga tgcatgcgtt ttgcgacgga tcttccacat      3660
     cttatgcagc tgctgtgtac ctaagagtag agcatcagga cggaagatgc tatacatctc      3720
     tgatggctgc aaaatcaaag gttactcccg cgaagccctt aactatacct cgaacagagt      3780
     taagtggagc ggtattggcc atcaaattgg tgaggtggct aactatggct aagtgtctga      3840
     gctcctttcc ggtccagact ttctattgga cggatgctac aattgtgctg cactggttgc      3900
     atggagacgt caatagatgg aagacctttg tcgcgaatag agtcgccttc gttttggatc      3960
     attcctcgcc agttcagtgg aggcacgttg gcactaccga gaatccagcg gactgcgcta      4020
     cacgcggtct cactcccatc gagctaaagg acttcgagct gtggtggcga gggccatcga      4080
     cagatttcgg tcaaattggc attaacgacg ccgctttaga ggcaaaggtg gccaaaatgc      4140
     gagttcacca tgcagtcccg cagccgtcgt ttcttgagag attttcaaca ctcagccagg      4200
     ctttacgagt cacaggctac atcatgcgct tcaaggacaa cgcgtccggc aaggtagaca      4260
     gacgccttgg gcccttaatt attgaagagc tcgactacgc tttattagcc gtcgtgcgna      4320
     tcgttcgcaa ccgacttgtc tgcagtaagg aactccaaac ggttgccctc gcggagcaaa      4380
     ttattaaatt cgtcgccgat attagaggaa ggcatcttgc gggtgagggg acgacttcgc      4440
     cattctagtt tgtcgcacga acgtcgtcat ccgataatcc tgccaagctc tcatcatttc      4500
     acagaattag taatacgtca ctcgcactat ctaaccctgc acggaggcgc gcagttgact      4560
     ttggcacacg cgcgtcagcg tttttggatc ctgacaggac ggcaagcagt tcgaagggtt      4620
     atacggaaat gcgttcgctg cttcagaacg cgaccaacta ctacggctca gcttatggga      4680
     gacttgcccg ttcatcgagt caaccctcct agtcgaccat tcattgccac tggcgtcgac      4740
     tacacaggcg caatagagat taaagcagcg cgtctacgag gcactagctt ttacaaggga      4800
     tacatcgccg tgttcatttg tctcgcaacc aaggcggtgc atttggaggc ggtgacaggt      4860
     ctcaccacgg agcatttttt actggctctg gacaggttca ccgggcgacg aggaatggtt      4920
     cagcaccttt acagtgacaa cggtaccaac tttgttggtg cagacaatgt aatgaagacg      4980
     gtgtacggtc agcttcaagc ggattacgag aagctcatcg cccccaagct tgcgtcgcag      5040
     cgcacaacgt ggcacttcaa tcctcctctg tcacctaact ttggtgggct ttgggaggcc      5100
     aatgtaaagt cggttaaaca ccatctaaag agagtcattg cagatcgncg gcttacctac      5160
     gaagagttgt cacggtgctc gtaagcatag aagcgtgtct caactcaagg ccgctttgcc      5220
     ctctcacggc tgacccggac gatctagaag tgctcacccc agcgcacttc ctcatcggag      5280
     actcaatgct ggcgccgccg gaatatcaac cacaatccag atccttcgca gagcagttcc      5340
     tcatccagca gacgatgata cgacatttct ggaaggcttg gagtcgtgac tggttagcgc      5400
     atcttcagca aaggccaaag tggtgtcagg agaccgaaag ctttcagctc aacgaccttg      5460
     tcattatcaa ggacgacggg ttccccccgt cgcaatggtt gctcgggcgt gttatggagt      5520
     tacacccagg gacggacgca ctggtccggg tggtaacagt taaaactaag caggggcagc      5580
     tgaagcgatc cgtagcaaag ctctgtcctc tgccaatccg cgcctaggcg cactcacctc      5640
     gatttataga ctgtatcttg cgcacacatc ttgctctcat ctctccatat tagataccga      5700
     ggatacgcat ccgagctcgc ttatcatcac cacagcctgg aggacccgga caagcgagga      5760
     tgtctcatgc taggtctagc attggcgggc ggca                                  5794
//
ID   BEL-4_DRh-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DRh_;
KW   BEL-4_DRh-I; BEL-4_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-299
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1554-1554 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 299 BP; 79 A; 74 C; 67 G; 79 T; 0 other;
     tgttcagtct actgcttgtc ccgatagttt gagagcgacc cgatcagctg atcgttcgct        60
     catctggacc tgtgtagggc gagagcatag aaaagggaac gcaaccagaa gcaacagtct       120
     gcacggtcga acaacgctga acgcacgccg ccggtctaac gaaatttgca ctttgtcata       180
     cacttgtaaa tcttggaatc agaataatta taacgctttg aatttatcct tttgtgtttg       240
     cctttgcctg ggaacctctc ttacaatgac ccctcgttga cctaatacaa ggggacaca        299
//
ID   BEL-4_DSer-I repbase;    DNA;    INV; 8667 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-8667
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2001-2001 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2149..7521
FT                 /product="BEL-4_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 and ribonuclease H, and integrase."
FT                 /translation="MPTGDDKKPRPIPSIRLDRSQSASPRASQLKPKATTA
FT                 ISRAKSDESVDTIRGSSPVTTRSAAKMAQNAIDAALKRFIATTDRVSHFEA
FT                 TIHTPGALETERFSPYMCQVHRDQIRALWEKVETSYESCSELLFGSDDGAD
FT                 TSTVLEAKYSYCYSVYSRCVAQLQEIIERGAAQSTLAASSAHTPPSTGCRL
FT                 PPVDTEVFAGDYLRWPTFRDLFTAIYINNSRVTPVEKLFHLLSKTSGDANA
FT                 IVSKAPLTNEGFVSAWRSLTDRFENRRLLVNSQLKILFNIQAVPQESGVAL
FT                 KELQGTIQSCLTALKMSSIQVEAWDCLLVYMVSSKLPKVTLSLWEQSIHNK
FT                 AEIPTWKELDAFLTERHRTLEAIDDVRSAPTSAPVRRLNSYETRVAPASKG
FT                 CDLCSRENHPVRLCPRFLEMDVSGRSEYIKRKQLCLNCFARGHQQRDCPSA
FT                 HSCSTCHSRHHTLLHRGNPFATGPNPLASTRPRPGPTTRGTGDTDEHSDVQ
FT                 VCFASGSGAVLLGTALITVCHLGCSFQARALIDSGSEATFITERLFNLVKL
FT                 PFKTIQAQVSGLNQSVSAQSTKMCQFSIQSPVRPGLQLEAAAYVLPQLSGN
FT                 LPSYPIPRALLXGLPDVPLADPKFFESSQIDVLIGADILPSVLLGNFKANI
FT                 CGSLLGQETIFGWVLTGPVSPATPRSLSAFSTRVSCAPADSLDKLLTKFWE
FT                 VEEVSTRIGPKSDEVCELNFVRTIQRDDCGRYVVSLPLRDPEHQGSDLASS
FT                 RSFALAQFLRNEQRLKRDPPLKARYDAVIREYLDLGHMIEVSPTSHSTTYY
FT                 LPHHAVLKPESTTTKVRVVFNASSPSANGISLNDILYAGPVLQSDLTIQIL
FT                 KWRYFKFVFNADIEKMYRQIWVDPKYTPLQRILFRNSDGDIRDYELRTVTF
FT                 GVNCAPFLAIRVLQQLADDEASRFPRASQIIRRFMYVDDILAGADSQAEAK
FT                 LAIRELQEALGSAGFPLRKWTSNSKTILAGIKSDHLLRADFLEIDAESTAK
FT                 TLGVRWKATTDEFFFIPPELTSESVFTKRQVLSQIAKLFDPAGWLAPFIVR
FT                 AKMFMQDLWLQDLGWDDVLPQEFSQRWVDFLENYSALDQVRIPRWVAFRPH
FT                 LKIEHHGFCDASQKAYGAAIYVRVEVESTVMTSLLTARTRVSPVKTVSLPR
FT                 LELCGALLLSEMASAVLPEMPGPAFTLHCWTDSTIVLAWLRRPACHWTTFV
FT                 ANRVTKITQLTEVDNWAHVRSEQNPADLASRGATLQDLATSQLWWHGPPWL
FT                 TKPRCEWPSQSTDSPVTELETRAIKAHVAMTPPEDILERFSTLDRALRVLA
FT                 YAYRFIQRSRKIKLPAEDPLTATEIASAERLLVAAAQRSAFTPEISCLSHD
FT                 RPLPASSSIQNLNPFIDAQGLMRACGRVTTSDLLQYDERHPLILPYNCRLS
FT                 RLLVHFTHRITLHGGNQLMIRLIRSKFWIPRVRNLVKFVIRSCKVCVIHQK
FT                 KVQTQLMGELPKERTSFSRPFTYTGMDYAGPFDIKNYTGRACLITKGYVLV
FT                 FVCFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQVQSDNGKTFVGAA
FT                 TLLSRDFLQGLKGAVTSAYSHQQLIWHFIPPGAPHMGGLWEAGVKSFKTLF
FT                 YKSTATRKYTFEELSTLLAKIEACLNSRPIAPMSEDPADLLALTPGHFLVG
FT                 GPLLTVVEPEIKGDTTSIINRWQHLKALQQQFRQRWKEEYLKELHKRNKWR
FT                 APSRDLRVGDMVVVKEDNLPSNEWRLGRVDAVFPGSDGHVRVADIRTARGL
FT                 IKRPLAKVVLLPTDASSGPQ"
FT   CDS           7973..8617
FT                 /product="BEL-4_DSer-I_2p"
FT                 /note="retropepsin."
FT                 /translation="MPPPRLGALPLRPGRRPPLHGVRPPRSCPRPSSXGNH
FT                 PPLARGSRSVATAPTLSSLLQRHCVNVLPTALVRIDTGTRIFNTAALIDPC
FT                 TPTSCIDASLAASFRLPTTRVGGDQICSATIGSRIDSHIRLDVMFKIEPHV
FT                 RIRTPIREVGESVRTHFRDITLADERFYLPATISVVLGADMYPRVMQPGFV
FT                 KIQDGLPVAQSTVFGWVVSGACHQP"
XX
SQ   Sequence 8667 BP; 1926 A; 2551 C; 2141 G; 2046 T; 3 other;
     tttggtcctt cgagccggat tctaccgaca ggatatcctt ccgccgtctt accagcagtt        60
     cccggcaact gtccgccaag ataagtacga cctcttccgt ttttccgttc tcgctgccgt       120
     ttattttagc agtgggccga acttttaaat tcggtcgcac cgctgaaaaa tttaatattt       180
     ttcttcgtgt caactccccg tccgagtttt cttttctgac accgcggcgg tgagaaattt       240
     catgtgctat tcgcctccga acttcgaaat tttccatccg tgtccgtttc gtgtgcgccg       300
     ccatcttcct cgccgtttct tcgattcccc gttgctcctc cacttgccaa cggtcgaggc       360
     ctatgtgctg caactacaca cacacgcatt cttcacttgt gctaatattt ccgcatataa       420
     aaagtccccc cgtgaacagg gaaagtgtgt taccaaaaga aagacagaat taatatcggg       480
     cagccggtgt gcgcttgttg cggaattccc cctgatcgcc gaacagtccg ccgctgtcac       540
     gctattcttt tcgctaattt tctctacaca tcttttcttc gttcgcacaa ttcaaataca       600
     gtccactcct cgacgctcca ctgtgccaat atcaacccta catattccag ctattacatc       660
     catatacata tacacacgcc cgcacaaggg cttatcaagt aattatttgt catattgagc       720
     agcttcgcgc tagtctatgc tgagcatcga gcgcccagct attacagcca taaacataca       780
     taccatacac acgctcgcat aagggcatat cacgtaatta cttgcccttt tttctcgtct       840
     cctctttgtg cctagagcgt gtgccagcgc ctgcactgat actttccaca gccaaacagt       900
     gccgccgaaa caaaatccac cacctacaaa tttgtaaaga aaataaaatg aaccaaggat       960
     ttaaaattat gcgaaatttt taaatcctat cctttatcta tatatgtaca tttacaatac      1020
     atacagattt attgagcaag cttcgcgcga tgctgcgctg agcatcgatc tccactatca      1080
     ttttacatac gtccatacmt acatatatcg ggcaagcttc gcactactcg gagcggagca      1140
     gcaaaaccca aacacaaacg cgggttggtt ttttttttgg ttttttttta ttgtcttcaa      1200
     tttagccgcc gccacggccg tgttgttgtt gccctaattc ttgggttctt catatacgca      1260
     ctgcttgctg acggcatcac acatcaagca gttccgctac caagaagcga gttcttttta      1320
     ttccaccttt acggctcaac caataggcat tcccggctaa ttaaaaatta aaagttattt      1380
     tgttttcggg ttgcgcgaca attgccaaca caactaaaat ccgaactccc tccgtgctta      1440
     attatttttt acacttagcc acagccggcg agttgttgtt gtgttggccg tttaattctt      1500
     gggcccctca agtatgcact gctttgccga cggcaccacc cagcaagcag ttccgcaaca      1560
     aaaacaaatc gagtttattt tttaaaaatt ccacacggtc aaaccagaag catgcgcggc      1620
     taattaaaaa attaaaaagg aaaaaaaaaa gagaattatt ttgttttcgg gttgcgagac      1680
     gggtacccat ataaaagaga tttgattatt ttttgattat ttttacactt agtcgtcaca      1740
     gccggcgagt ggttgttggt ttggggtccc tcacatgcac tgctttgccg acgcacaacc      1800
     agcaagcagt tccctacaaa acaaaaacga gatttttttc taaatttcac acagagacat      1860
     tcgcggctaa ttaaaaaatt cagaaaaatt attttgggtt cgggttgcaa cataatatcc      1920
     cactaccact cgaatccgaa ctcccacccc cacgatctgc gactgcggcg gttgctgaca      1980
     tttcagtcgg cttcctcgat ccgagcgtca agccttgtgg ccgaggttca gctctagttt      2040
     tttcttttct caattttctc catttgggcg acccagtctg tgcgttagtg tgaccgtcct      2100
     ctcgtcctac agtcgacaag tcctgatctc cagcattcta ttccgagaat gcccacggga      2160
     gacgacaaaa aaccgcgtcc gatcccatcc atccgtttgg acagatccca atccgcatct      2220
     ccgcgggcgt cccaattgaa gccaaaggct actacggcca tctcaagggc aaaaagcgac      2280
     gagtctgtcg ataccattcg cggttcctcg ccggtaacaa ctcggtcagc tgcaaaaatg      2340
     gctcagaatg cgatagatgc cgctctcaag cgcttcattg ccaccacaga tcgggttagc      2400
     cacttcgagg ctacgatcca cactccgggc gccctggaga ctgaacgatt ctccccctac      2460
     atgtgccagg ttcataggga ccaaatccgg gctttgtggg aaaaggtgga gacgagctac      2520
     gagagctgct ccgaactgct cttcggatcc gacgacggcg cggacacttc gacggtgtta      2580
     gaagctaaat atagctactg ctactccgtc tactccaggt gcgtggccca gctgcaggag      2640
     attatagaac ggggcgcggc ccagtccact ctggctgcca gcagcgccca cacaccccct      2700
     tccaccggtt gtcgtttacc accggtagac accgaggtgt ttgcgggcga ctatcttcgc      2760
     tggcccacct tcagggactt gttcacggcg atttatatta acaactctcg ggtcacacca      2820
     gtcgaaaaat tgttccacct attgtcgaaa acaagtggcg acgcgaacgc catagtttcc      2880
     aaggccccgc tcaccaatga aggtttcgtc tcggcgtggc gaagcctcac cgaccgcttc      2940
     gaaaatcgaa gattattggt taacagccag ttgaaaatcc ttttcaacat ccaggctgtc      3000
     cctcaagaat cgggagtcgc gctgaaggaa ctgcaaggca ccatccaaag ctgcctgacc      3060
     gcgctaaaaa tgtcctccat tcaagttgag gcttgggatt gtctgttggt ttatatggtt      3120
     tcctcaaaac ttcccaaagt aactctttct ctgtgggaac aatccatcca caacaaagcc      3180
     gagatcccaa cctggaagga gttggatgct ttcttgaccg agcgtcatcg cactctggag      3240
     gccatcgacg atgtcagatc ggcacccacg agcgctccgg ttcgcaggct caactcgtac      3300
     gagacccgag tggctccagc ctccaagggg tgcgatctct gttcccgaga gaaccacccc      3360
     gtgcgcttat gtccacggtt cctcgagatg gacgtgagtg ggcgctccga atacatcaag      3420
     agaaagcagc tctgcctgaa ctgttttgca cgagggcatc agcagcggga ctgccccagc      3480
     gctcacagct gctccacctg ccacagccgt catcacacgc tcctgcaccg cggtaatccg      3540
     tttgcaaccg gtccaaatcc gttggcgtcg accaggcccc ggcccgggcc tactaccaga      3600
     gggacgggag atacagacga gcactcagat gtacaggtgt gtttcgcttc cggctcagga      3660
     gccgtcctgt tgggcaccgc cctcatcact gtgtgccatt tggggtgcag tttccaggcg      3720
     cgagccttaa tagactcggg gtccgaggcg accttcatta cggagcggct gttcaacctg      3780
     gttaagcttc ccttcaagac gatccaagcc caagtttccg gccttaatca gtctgtgtcc      3840
     gctcagtcca ccaaaatgtg ccaattttct attcagtcgc cagtcagacc cgggttacaa      3900
     cttgaagccg cagcttacgt tctcccgcag ctgtccggca atctgccctc gtatccgatt      3960
     ccgcgggccc ttctcaasgg gcttcccgac gtccccctgg cagatcccaa gttcttcgag      4020
     agctcccaaa tcgacgtctt aataggagct gacattctcc cgtcagtcct cctcggcaac      4080
     ttcaaggcta acatctgcgg gtcgcttctc ggccaggaga ccatttttgg atgggtgttg      4140
     acagggcccg tgtctccggc cactccccgc agtttgtctg ccttttccac acgagtgtcc      4200
     tgcgccccgg ccgactcgct ggataagctc ctgaccaaat tctgggaggt ggaggaagtg      4260
     tcaacacgaa tcggcccaaa atcggatgaa gtctgcgaac tcaattttgt ccggactatc      4320
     cagagggacg attgtggcag gtatgtcgtg tcgcttccct tgcgcgatcc tgagcaccaa      4380
     ggttcggact tagcgtcttc acgatccttt gctcttgccc aattcctacg taatgagcag      4440
     cgtctgaaaa gggacccgcc cctaaaagcc aggtatgacg cggtgattcg ggaatacctt      4500
     gacttggggc acatgatcga ggtttctccg actagccact ccacaactta ctaccttccg      4560
     caccacgcgg ttctcaaacc cgaaagtacg accaccaagg tgcgggtggt ctttaacgca      4620
     tcaagccctt ccgcaaacgg gattagcctg aatgatatcc tttatgcagg cccagtctta      4680
     cagtccgacc taaccattca aatcctaaag tggcggtatt ttaagtttgt ttttaatgct      4740
     gacatcgaga aaatgtatcg ccaaatttgg gtagatccga aatatactcc tctccaacgt      4800
     atcctctttc gtaattccga tggggacatc cgggactatg agttaaggac tgtcaccttt      4860
     ggagtcaatt gcgccccctt tctagcgatc cgtgtcctgc agcagctcgc cgacgacgaa      4920
     gcctcgaggt ttccgcgggc cagtcagatt atccggcgtt ttatgtatgt tgacgacatt      4980
     cttgcgggag ccgactccca agccgaggcg aagcttgcaa tccgcgagct gcaggaggcc      5040
     ctgggttcgg cagggttccc acttcgaaaa tggacctcca atagcaagac gatactggcg      5100
     ggcattaaga gcgaccacct cctccgagct gatttcctgg aaatagacgc agagagcacg      5160
     gccaagactc tgggggtgcg atggaaggcg acaacagacg agtttttttt cattccgcca      5220
     gagttgacct cagagtcggt attcacgaag cgccaggtcc tgtcccagat tgccaaattg      5280
     ttcgacccag caggctggct cgcccccttt attgtccggg cgaagatgtt catgcaggac      5340
     ctctggctcc aggatttagg gtgggacgac gtcctgcccc aagagttctc tcaacgatgg      5400
     gttgacttcc tagagaatta ctccgcgctc gaccaagtcc gcattcctcg atgggtcgcg      5460
     ttccgccctc atttaaaaat cgagcaccac gggttctgcg acgcttcgca gaaggcgtat      5520
     ggcgccgcca tctacgtccg cgtggaggtc gagtccacag taatgacgag cctgctaacg      5580
     gcgaggaccc gagtgtcccc agtgaaaacg gtgtcactcc ctcggttgga gttgtgtgga      5640
     gctctgctgt tatccgaaat ggccagtgcc gtgctcccgg aaatgccagg gccggcgttt      5700
     accctacact gttggacaga ctcgacgatt gtcctcgcct ggttgcgcag accggcgtgt      5760
     cactggacga catttgtagc caatcgggtg accaagatta cccagctgac cgaggtggac      5820
     aactgggcac atgtccgctc cgagcaaaac ccagcggatc tcgccagccg gggggcaacg      5880
     ctgcaagacc tcgcaaccag tcagctgtgg tggcatgggc ccccctggtt gacgaagccg      5940
     cgttgcgagt ggccgagtca aagcaccgac tcccccgtga ctgaactcga gacgcgggca      6000
     atcaaggccc acgtcgcgat gacccccccg gaagacatcc tggagcgttt ctccaccctc      6060
     gacagggcct tgcgagtcct ggcttatgcc tatcgcttca tccagcgctc tcggaagatc      6120
     aagcttccgg ctgaggaccc cctgacggcg accgagattg cctcggccga acgactgctg      6180
     gtggcggctg cgcaacgcag cgcgttcacc cctgagatca gctgcttaag ccacgatcga      6240
     ccactaccgg catccagttc cattcaaaat ttgaacccgt ttattgacgc acaggggctc      6300
     atgagagcct gcggccgggt cacgacttcc gatcttctcc aatatgacga gcggcatccg      6360
     ctaatccttc cgtacaattg ccgtttgtcc cgactacttg tccactttac gcatcgcata      6420
     acactgcacg gcggtaatca gctaatgatc cgtctgatcc gctccaaatt ttggattccg      6480
     agggtaagga atctggtgaa gttcgtcatc cgttcgtgta aagtgtgtgt cattcaccag      6540
     aagaaggtgc agacgcaact catgggagaa ttgcccaagg aacggacgtc gttctcgcgc      6600
     cccttcacct acaccggtat ggactacgcc ggccccttcg acattaaaaa ctacacgggc      6660
     cgggcctgtc tcattacaaa gggatatgtt ttggtgttcg tgtgcttctc aactaaggcc      6720
     atccatttag agcctacttc ggaccttacg acggagaaat tcctcgccgc tttcgcgcgg      6780
     ttcgtgtccc gaagaggatg cccccgtcaa gtgcagtcgg acaacgggaa gacctttgta      6840
     ggggctgcga cactactctc ccgtgatttt cttcaaggct tgaagggggc tgtaacgagt      6900
     gcctatagcc atcagcaact tatctggcat ttcattcccc cgggagcccc ccacatggga      6960
     ggcctttggg aagcaggtgt caaaagcttc aagaccctct tttataagtc gacggcaaca      7020
     aggaaataca cctttgaaga gctgtccacc ctcttggcga agatagaagc ttgcctgaat      7080
     tcgcgcccga ttgcgcccat gtccgaagac cccgccgacc tcttggctct tactccgggc      7140
     cactttctgg ttgggggccc cctcctcact gtggttgaac ccgagataaa gggggatacc      7200
     acatccatta ttaatcggtg gcaacaccta aaggccctcc aacagcagtt tcggcagcgg      7260
     tggaaggagg agtatctcaa ggaactccat aagcgaaaca agtggcgggc cccctcaaga      7320
     gacctccgtg taggagatat ggtggtggtc aaggaagaca acctcccgtc caacgaatgg      7380
     cggttgggaa gagtcgacgc ggtgtttccg ggttccgatg gtcatgttcg tgtggccgac      7440
     attcgtactg cgcgggggct catcaaacgc ccgttagcaa aggtggttct cctgccgacg      7500
     gatgcgtcct ccggcccaca atagtctatc gccaataacc gacgtcatgt gttgtctcgt      7560
     agctctaatc cgtagttctt gttcgttgtc cacacctagt actgattcct ttcttcttta      7620
     tcatcatagt ccagcagtct actcagcacg atgcccccac gcccacgcaa cgctatcgca      7680
     ctggagcgca gacgtactcg aggtactgtg tcctaccgat gccgagtctg cagggggatc      7740
     cacccattgc ggaagtgtcg ccgctttctg cgcctgaatg ccgagaagcg gctacgggca      7800
     gtactcgcca atcggtactg cccgaggtgt ctggcccacg agcactcgga cggagcgtgt      7860
     cggcgggggg accggtgcaa aacatgcggc caggagcacc acacgctgtt gcacctgaac      7920
     gagccgccga tgactccgca ccaaccgcgt caggaggcgc gtcggtcgcg agatgccccc      7980
     gccacgtctc ggcgcgctcc cactgcgtcc cggccgccgt ccgccgctcc acggagttcg      8040
     tccaccgcgc tcctgccctc gtccgtcgag caamggcaat catccgccat tggccagggg      8100
     ctcgcggagc gtagccacgg ccccgacgct gtcgtcgctt ctgcagcggc actgcgtgaa      8160
     cgtgctcccg accgccttgg tccggattga caccgggacc cggatcttca atacggccgc      8220
     gctgatagat ccgtgcacac ctacaagctg catcgacgcg tcgctggcgg cgagtttccg      8280
     gttgcctacg acgcgcgttg gcggtgacca aatctgttcg gccacgattg ggtcgagaat      8340
     cgatagccat atccggctgg acgttatgtt taagattgag cctcacgttc gcattcgcac      8400
     tccaatccgg gaagtaggcg aatcggtgcg gacccacttc cgggacataa cattggcgga      8460
     cgagcggttt tacctaccgg ctacgatctc tgtggtcctc ggcgcggaca tgtatccgcg      8520
     agtgatgcag ccagggttcg ttaaaatcca ggacggactg ccagtggccc aaagcaccgt      8580
     ttttggatgg gtcgtctccg gagcctgcca ccagccatag ccgcaacgac cttgttgcaa      8640
     cccgagcgat tgcaaggggg ggcagga                                          8667
//
ID   BEL-4_DSer-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-318
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2010-2010 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 318 BP; 61 A; 95 C; 80 G; 82 T; 0 other;
     tgtttagatg aggcccactg tgccgcctct gctcgcggag ctttccgagc aagcgcctcc        60
     cttgctctcg cgctccgact ctcgggtcta aagtgccgac catcggcgat ctcccgcgct       120
     cgtatttgga gagcaaagcg gccgagagct cggcttaggt ttaagctagt agttagtctt       180
     atgtatgcag cgaaataaag ctgatgaaaa tctgaattgc ccacgacgcc cccgccttac       240
     ttactttcgt ttgcgacgtg ggaatttttc cttggactac ttccatccag gatcttgcgg       300
     caggacgccc ccttcaca                                                     318
//
ID   BEL-4_DTa-I repbase;    DNA;    INV; 8132 BP.
XX
AC   AFFI01007510;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DTa_;
KW   BEL-4_DTa-LTR; BEL-4_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8132
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007510; Positions   19737   11606.
XX
CC   Positions [4421-5002] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5395..7062
FT                 /product="BEL-4_DTa-I_1p"
FT                 /translation="MNTIIIITALAVFTQQAPVPEPPVRVTPFNMSGTYVE
FT                 LQDRITLSSAEWTIVSYFDLRSLAEEIQAFTKGVTELEKYCGREGTSGTIV
FT                 EALTQEMDEFQDAQDLFNHQRQKRGALDLVGNLANGLIGVLDSQYAQKIET
FT                 TLQKIKSKELDHTHLLEKQTSILDTTVNVMKSSYTMMEERVKRVEGLVTNL
FT                 ENSIKTGKVARIATELSLVAGHIKRTQAIIIIINVVTGVHKGTIDPALLSV
FT                 NQLRRELINIQAHLPSGRRLPVKQETNHDIYRLITTQVQELDELLVFHSKV
FT                 PLVDEEEFNVYHLSPIPIVVNNTIRIVRTETEYLAISDHQDRHFAISKGEL
FT                 ERCTRLSTGSLLCKLRQATLGPAHELLRCTLAAFHKEHDPLCASTEEPASS
FT                 VWYPLTLPNSWIFATAKEITLTYVCGEERHQVHIDGSGKITLKENCIARST
FT                 TVTLQGHPHLQSAIHEQEPAIFVHPMSLGNKPEAIMEHDMESRYGNHTQQL
FT                 TQLQQEVQTRRKMQTQQPNESTDGLQRYVNVSTIATISIITIVAMVTTAII
FT                 RWKKKKNVC"
FT   CDS           join(341..3661,3665..5395)
FT                 /product="BEL-4_DTa-I_2p"
FT                 /translation="MESSLSLALDAPRITPALQRHLDSQWTLMRKAHDDIE
FT                 MIPGATRAAIAEITQFRELYAEYEMTLLRETEAPLRLTLSQPPVTLPEFSG
FT                 EYLQWPQFHDLFIELVHKQPYPSTQKLHLLQSALKGEARNILTDTAFSQGE
FT                 YKDIWRRLKTRYQNGKLLIFTALAKMFDYEPINGSATQIRALHDTVERSLS
FT                 TLKSLEVSTETWDPILGFLIRRKLDHNTLAALEDAADAPTEVPTLPSVLNF
FT                 LERRSCMLETLSEQPGAKPKPTFGTSSSYTVCRVCNQTQHTITNCNLFKNM
FT                 TPDERRNIIYRLRGCSNCLSTQHKFGSCPSIRTCRHCGQRHHSMLHNVNHG
FT                 LVSGPQTTAVATIIPSDTATNSRPPSVKVAVNSCQEASTRYVLLGTAKVQL
FT                 TGPGNFQEQCRTLIDPGSQISLMSRRMANRLALPVTKTAVTIGGIGGKTQE
FT                 STSRAMVKMSSLTSNFKTDIEVIILPQLMADQPSEPVTEKLNIPRNIHLAD
FT                 PRFREPGSIDLVLGADIYPQLTRKENILLGRNKPLLQDTNLGWIVLGPTIQ
FT                 QASTTAAVNVTIDQNETLTSELEKFWKMDTLPVISSPMTAQERLCEEHFLA
FT                 NVKMGPDHRFSVRLPFVEEPTSLGLTMQMAQRRLFSLEKRLQRDASIRQGY
FT                 VQFMDDYERLNHMTEIDERQLSRNHYFIPHHCVLKPDSSTTKLRVVFNASA
FT                 TSTSGKSLNDILRIGPTVQGELLSILLRFRCYRFVFTADIEKMYRQIWVHP
FT                 NDRNYQLILWRKNPTDKIRYFRLNTVTYGTACAPYLATRCLQQLAITAPTH
FT                 LQVGATAIKQNFYVDDCISGADTLDEARKQQDQVRQLLGSANLKLRKWCAN
FT                 HPALLETIPKEDQEIDLDFSRLSDSTIKTLGIIWNPQEDQLQGRATTLEEG
FT                 PVSKRIVCSELAKIFDPLGLLCPVTTTAKIFMQQLWQKDLDWDTILDSKDT
FT                 QQWQNFRKESQTLSSLQFPRCPLTKDSHQTTQLHIFTDASETAYGATAYLR
FT                 SHSTKTGVESHLLCAKSRVAPLVKQTLPRLELCAAVLGAELAERVKTDLPF
FT                 DMQEVYYWTDSEIVLAWITASASSFHTFVANRVSRIHEISMPEQWAHVASQ
FT                 NPADLVSRGCKAPQLQQHELWFNGPTFLKKEPREWGRGIKKGIIYEGPEKR
FT                 KVTTNIVISAENNGWIDNINHRGSFQVLLRVTVWLLRFKPNVKNPKNRETG
FT                 PITPEQIIKAREVIVKEIQKKAFKDTLNSLKGREKVTANDPYRSLDPFIDE
FT                 NGILRVGGRLQESALSYNAQHPMLLPFDHELTRLMLHNKHEQLKHCGPQTL
FT                 LAHSRQEFWIIKGRQLARMIVQRCVRCCRARPRLLGHIMSPLPRDRVQAAR
FT                 PFMISGVDYCGPLWVHYKIRGKRPHKVYIAVFCCFSTKAVHLEVVTDLTTQ
FT                 AFIAALKRFIGRRGAPVRIYCDNATNFVGANNQLAELKVSIHDQGAQDLIQ
FT                 GTCTQVGTEFCFIPPRAPHFGGLWEAAVKSAKHLLIRSIAAASLTHEELET
FT                 ATVDVKAILNSRPLTPISSSPNDLAALTPGHFLIGEALTASPQVHGQERRS
FT                 GLVTRWKQVDKVRQHFWERWSLEYLHQLQDRAKWTTTRGSIQPGNLVVIKE
FT                 DNAAPLQWPLGRVLRTHPGRDGHTRVVDIKTATGECTRAIHRLAILPVEDQ
FT                 RSTVKKLPPQQTLRL"
XX
SQ   Sequence 8132 BP; 2648 A; 1936 C; 1855 G; 1693 T; 0 other;
     ttggtgaccc cgacgtgatc cttgcatttc caaggatcac atttacaagg aatcattaac        60
     tgattctttt gaaccacgct aaactaaagt cctccagatt aggcacgtta ctaaaggtcc       120
     tccagttcag gcacctcatt aaaagtcctc cagttcaggc acaacaccaa agtcctccag       180
     attaggcaca ttactaaagg tcctccagtt caggctcctc attaaaagtc ctccagttca       240
     ggcaaaacac taaggtcctc cagataaggc acctgacaaa gtccgccagc cacggcatat       300
     aagtcaggca attcggttgc tacaactaag atgtaccgaa atggaatcat cgctcagttt       360
     agcattagat gcacccagaa tcacccctgc actgcaacgc catttggatt ctcaatggac       420
     cttaatgaga aaagcacacg acgacatcga aatgatacca ggggcaacac gggccgccat       480
     tgcagaaata acccaatttc gggagttgta cgctgaatac gagatgaccc tattacgcga       540
     aaccgaagca ccactgaggt tgaccttgtc acagcctcca gtgacattac ccgaattttc       600
     cggtgaatat ttgcaatggc ctcaattcca tgacctattc atagaattgg tccacaagca       660
     gccatacccg tcgacacaaa aactccatct gctacagagc gcattaaaag gagaagcccg       720
     aaatatatta acagatactg cattctctca aggagaatat aaagacatct ggcgacgttt       780
     aaagaccaga taccaaaatg gaaaattact tatcttcact gcactcgcaa agatgtttga       840
     ctacgagccc atcaatggat cggctactca aatccgagca ctgcatgata ctgtcgaaag       900
     atctctaagc accctcaaaa gcctagaggt cagcacagag acttgggatc caatcctggg       960
     tttcctcatc cggaggaagc tggatcacaa caccttggcg gcactggaag acgcggccga      1020
     tgcacccaca gaagtaccca cattaccaag cgttctcaac tttttggaac gacggtcctg      1080
     tatgctggaa acgttaagcg aacaacctgg agcaaaacct aagccgacat tcggaaccag      1140
     ctcaagctac accgtctgca gggtctgcaa tcagacacag catacgatca ctaactgcaa      1200
     cttgttcaaa aacatgactc ctgacgaacg tcgaaacatt atttaccgac ttcgaggatg      1260
     ttcaaattgt ttatcaacac agcacaagtt tggcagttgt ccgtcaatca gaacatgtcg      1320
     acactgcgga caacgtcatc attcaatgct acacaatgtc aaccacggct tagtgtcagg      1380
     acctcagacg accgcagtag ccacgattat tccctcagac actgcaacca actcaagacc      1440
     tccctcagtc aaggtcgcag taaattcatg tcaagaggct tcaaccagat atgttctgtt      1500
     aggtacagca aaggtacagc tcacaggtcc aggcaacttc caggagcagt gtcgcacact      1560
     aatagatccc gggtctcaga taagcctcat gtctcgaaga atggcgaatc gattggctct      1620
     gccagtcaca aaaactgcag taaccatagg cgggataggc ggcaagacgc aggaatctac      1680
     ttctcgggcc atggtaaaga tgtcatcact cacgtctaat tttaaaaccg acatcgaagt      1740
     cataatacta ccgcaactaa tggccgatca accctcagaa ccggtaacag agaaactaaa      1800
     tattccaagg aacatacact tagctgatcc caggttcaga gagcccggtt ccatagacct      1860
     agtacttggt gctgatatat atccacagtt aacaaggaag gaaaatattc tgctcggacg      1920
     caataaaccc ttgcttcaag acaccaactt ggggtggatt gttttaggac caaccatcca      1980
     acaagccagc actacagcag ccgtgaacgt tactatagat caaaatgaaa cgctaacgtc      2040
     agaattggaa aaattttgga aaatggacac actacctgta atctcctcac caatgacagc      2100
     tcaagaacga ctctgcgagg agcattttct ggctaacgta aaaatgggtc ctgaccatcg      2160
     tttttcagta cgactcccct ttgtagaaga gccaactagt ctaggcttaa ctatgcaaat      2220
     ggctcaacga agattgttca gtctagagaa aagattgcaa agagatgcct caatacggca      2280
     agggtatgta caattcatgg atgactatga aagattaaac cacatgacag aaatagacga      2340
     gcggcagcta tcaaggaatc attatttcat acctcatcat tgtgtcctaa aacccgacag      2400
     ttcaacaaca aagttgaggg tggtgtttaa cgcatccgca acaagcacaa gcggaaaaag      2460
     cttgaatgat atattacgca ttgggccgac agttcaagga gagctcttgt caatactact      2520
     caggtttcga tgctaccggt ttgtattcac cgccgacatt gaaaaaatgt acagacagat      2580
     ctgggtgcat cccaacgacc gaaactatca gctaattctc tggcgaaaaa atccaactga      2640
     caagattcga tattttcgac ttaatacggt gacatacggt acagcatgtg ctccgtattt      2700
     agccaccaga tgcttgcaac aactagcaat cacagctccg acacatctcc aagttggagc      2760
     cacagcaata aaacagaact tctacgtgga cgattgcata tcaggcgctg acacgctgga      2820
     cgaagcaagg aaacagcagg accaggttcg tcagctactg ggctccgcga atctaaaact      2880
     gcggaaatgg tgcgccaatc atccagcgct actggaaacg attcccaagg aagaccagga      2940
     aatagatttg gattttagtc ggctctccga ttccaccatc aagacactcg ggatcatttg      3000
     gaatccacaa gaggaccaat tacagggacg agcaactacg ctcgaggaag gtccagtgtc      3060
     aaaacgaatc gtgtgttccg aactagccaa gatttttgac ccacttggtt tgttgtgccc      3120
     cgtaaccacg actgcaaaaa ttttcatgca acaactatgg caaaaggatc ttgactggga      3180
     caccatttta gacagcaagg atacacaaca atggcagaac tttcgcaagg aatctcaaac      3240
     gctttccagc ctacaatttc caaggtgtcc attaacgaag gacagtcatc aaacaacaca      3300
     attacatatt tttacggatg catctgaaac agcatatgga gcaactgcct accttcgtag      3360
     ccattcaact aagactggag ttgagagtca cttgctatgc gccaagtctc gcgtagcccc      3420
     actagtgaag caaacactgc cgcgacttga actatgcgca gcagtattag gagcagaatt      3480
     agccgaaaga gtaaagacag acctaccgtt cgacatgcag gaagtctact actggacaga      3540
     ctccgagatt gtactagcat ggataacggc gtcagcttca tcatttcaca cgttcgtggc      3600
     aaaccgagtc tcgaggattc atgagatatc tatgccagag caatgggccc acgtggcatc      3660
     atagcagaac cctgcagatc tcgtatcaag gggatgcaag gccccccagc tacagcagca      3720
     tgaactatgg ttcaacggac caacattcct aaaaaaggag cccagagaat ggggccgagg      3780
     aataaagaag ggaataatct acgaaggtcc agaaaaaagg aaggtaacaa caaacattgt      3840
     aataagtgca gaaaacaatg gttggattga caatattaac caccgaggat cgtttcaagt      3900
     cctactgcgg gtcactgtgt ggttgttgcg cttcaagccc aacgtcaaga accctaaaaa      3960
     cagggagaca ggaccaatca ctccagaaca aataataaag gcccgagaag tcattgtaaa      4020
     ggaaatacaa aaaaaggcat tcaaggacac attgaacagt ttaaagggac gagaaaaggt      4080
     gacagccaat gacccataca ggtcattgga tccattcata gacgaaaatg gaatactgcg      4140
     ggttggaggg cgcctgcagg aatcagcact tagctacaat gcccagcacc cgatgttact      4200
     gccatttgac cacgagttga cacggttaat gctgcataat aaacatgagc aattgaaaca      4260
     ttgcggaccg caaacgttgt tagcccacag caggcaagaa ttctggataa tcaagggacg      4320
     gcaactagcg aggatgatag tgcaacgatg tgtacgctgt tgccgggctc gacccagatt      4380
     attgggccac atcatgagtc cactacccag agatcgagta caagctgcaa ggccgtttat      4440
     gatcagcggg gtagattatt gtggaccact ttgggtacac tacaaaatcc ggggaaaaag      4500
     gccacacaag gtgtacatag cagtgttctg ctgcttttca acaaaggcag tgcacctgga      4560
     agtagttact gatctaacga ctcaggcctt tattgcagcc ctaaaaagat tcattgggcg      4620
     acgaggtgct ccagtacgaa tctactgcga caatgccaca aattttgtag gggcgaataa      4680
     tcagttggca gaactaaaag tcagcattca tgaccaagga gctcaagatt taatacaggg      4740
     aacatgtaca caggttggaa cggaattttg ttttatacca ccaagagcac cgcattttgg      4800
     gggtctttgg gaggccgcag tcaaatcggc aaaacaccta ctaatcagaa gcatagcagc      4860
     agcatcgttg actcatgagg agctagaaac cgccaccgta gatgtgaaag ccatactaaa      4920
     ttcacgacct ttgactccaa tttcttccag cccaaacgat ttggccgctc taacccccgg      4980
     ccattttttg ataggagaag cactgacggc atcaccacaa gtgcacggac aagaaagacg      5040
     atcaggcttg gtcactcgtt ggaagcaagt ggacaaggtc agacaacatt tctgggaaag      5100
     gtggagcctg gaatatctgc accaacttca ggacagagca aagtggacta cgacaagggg      5160
     atcaattcaa cccggaaatt tggtagtaat aaaagaggac aacgcagcac cactccagtg      5220
     gccactaggg agagtgttaa gaacgcatcc aggaagagac ggacacacac gggtggtcga      5280
     cataaaaacc gcgactggag agtgtactcg ggcaattcat cgtttagcaa ttttgcccgt      5340
     ggaagatcaa agatcgactg tcaagaagct accaccacaa caaacactaa gattatgaac      5400
     acaatcataa tcatcacggc actcgccgtt ttcacccaac aggctccagt gccggagcca      5460
     ccggtgaggg tgacaccatt taacatgtcg ggcacgtatg tagaattaca agatcgcatc      5520
     acgttatcat cggcggaatg gacgatcgtg tcatacttcg atttacgaag tttggcagaa      5580
     gagatacaag catttacgaa aggagttaca gaactagaga agtactgcgg tcgagaagga      5640
     acctctggaa cgatcgtgga ggccctaact caagaaatgg atgagtttca ggacgcccag      5700
     gatctgttca accaccagag gcagaaaagg ggtgccctcg atctagtagg aaatctagcg      5760
     aatggactga tcggagttct ggattcacaa tatgcccaga agatagaaac aacgctacag      5820
     aaaattaagt caaaagagtt ggatcatacg catctactcg aaaaacaaac gtcgatactg      5880
     gacactacgg tcaacgtgat gaagtccagc tacaccatga tggaggaacg tgtaaaaaga      5940
     gtagaaggtc tggttacaaa cctcgaaaac tccatcaaaa caggaaaggt ggcacgaatc      6000
     gcgacagaat tatcattagt tgctgggcat ataaaacgca cccaagcaat aataataata      6060
     attaatgttg tgaccggtgt tcacaagggg acgattgatc cagctttgct atcagtaaat      6120
     caactacgaa gagagttgat caacattcag gcacatttgc caagtggacg gaggcttcca      6180
     gtcaaacagg agactaacca cgatatttat cgactgataa caacacaggt ccaggaacta      6240
     gacgagctat tagtgttcca cagcaaggta ccgttggtag acgaggagga attcaacgtc      6300
     tatcatctat caccgattcc aatagtggta aacaacacca taagaattgt gcgtacagaa      6360
     acggagtatt tggctatcag tgaccatcaa gatcggcatt tcgccatcag caaaggagag      6420
     ctcgaaagat gtactaggct gtcaactgga tcgttattgt gcaagctacg acaagcaacc      6480
     ttaggcccag ctcatgagtt gttaaggtgc acattggcag cctttcacaa agaacatgat      6540
     ccgctgtgtg catcaacaga agaaccagca tcaagcgtat ggtatccact tacgttgcct      6600
     aattcgtgga ttttcgctac cgccaaagaa atcaccctga cgtatgtatg cggggaagag      6660
     cgtcatcaag ttcacataga cggcagtggg aagataacct tgaaggaaaa ttgcatagca      6720
     cgcagtacaa cagtaacgtt acaaggtcac cctcacttgc agtcagcaat acatgagcag      6780
     gaaccagcaa tttttgttca cccgatgagt ctgggtaaca aaccagaagc aataatggag      6840
     cacgatatgg aatcacgata tggtaaccac acacaacagc tgacgcagct gcagcaagaa      6900
     gtccaaactc ggaggaaaat gcagactcaa caaccaaatg agtcgacgga cggcttacaa      6960
     aggtatgtaa acgtcagcac gatagcgaca atatcaataa tcaccatagt tgcaatggtt      7020
     acaacggcaa ttatacggtg gaaaaagaag aagaatgtat gctgaaaaaa ttaaggtgaa      7080
     gaagacaaaa cgacaacgac catagggagg cctgaaagca gaaacccacc agagcccaag      7140
     attcgatcga caagaatcac tcgcaccttc aagatgagcg attcagagtt gtcatactta      7200
     aaaaaaaaaa aagaaaagga agaaacacac gtagatttat aacggggatt acatattcaa      7260
     gtagtttatt aagaggactc ggccccagag tcaacagaga tatcgtaacg ttgggcggga      7320
     gccagcggtg caggagaagg ccgtcgcatg acacgagtca agtttagacg gatgacggcg      7380
     aaccgagcat cagggagaca caggatagaa ccaggttcaa cgcgtataac tttctctgga      7440
     ggataggaca caccgtttac aatgggccca cagctcgtac gcaggagaat gtgcccacca      7500
     gatcgtctaa tgtagtagcc cgggagatca tccaacaagg tccaagattt ccggacgggg      7560
     aagcagcacg ggacccccac aacatcaact accacacggc gacaaacgta gagcgacatg      7620
     gtgacatcaa ctactgaggt agcagcaatg gcgtaaatat ttataccaaa taagtgtcag      7680
     gtcagcacat ggtgtcgaag cgatgttggc aacaaaaaga cgctaacaat caagtccgga      7740
     atctacatcg gattcccagg catcggtatc aatatctgat tctgtctgcg cagatacagg      7800
     aggactgctg ctgcgatata cggcggtgac aacatgatga aactcaaacg cggtgccatc      7860
     gtccataaga aacgggcagt ccaatattac caggattagg gtactgggag gataccaatg      7920
     gccgcggaac agtaacccga cggcactcaa caaccaaaca cggttacttc gccgattaat      7980
     ccttagtcga cgagagacct tggtaatacc agatggaacc tggattgcgg catggtggcc      8040
     aacaagatgc agggcgatgt cggtatacgg aagcaggtgc atgatggaac tacgaacaca      8100
     aatcacccac ggcccccaca gcaaaacacc tc                                    8132
//
ID   BEL-4_DTa-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   AFFI01007510;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DTa_;
KW   BEL-4_DTa-I; BEL-4_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-227
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007510; Positions   11605   11379.
XX
SQ   Sequence 227 BP; 74 A; 65 C; 30 G; 58 T; 0 other;
     tgaatgtaac ccactccact gatcttacga agaagcttcc gccctatcta agtagtatat        60
     aagcatgtat caataatcca ataaatcagt tatctattca ccctataact ccgcgtactt       120
     tactctgcac tcccgggagc acactcgcgc taaataataa ttctaactca agtaaaccga       180
     aaccgacaac attcattgat ccccctcgtt caaggtgcga ccaaaca                     227
//
ID   BEL-4_DVir-I repbase;    DNA;    INV; 5752 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DVir_;
KW   BEL-4_DVir-LTR; BEL-4_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5752
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1781-1781 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4804-5361] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1024..5733
FT                 /product="BEL-4_DVir-I_1p"
FT                 /translation="MIPATVPYAIGTLRMLYGRSEIVHAALQQKLREEPAI
FT                 KSDNLNTVIRLALAVQNYCATIAAIGMHEYLYDPALLNELVAKMPSNMKLD
FT                 WGRHRMSNEGSSLATFDNWLFNVAMCATMVTPYETPLADNEKKSSTKTTRE
FT                 RIFVHNTVDSPEGSQQQRSQQEQERVSCAKCAGNHRLSDCDDFRSMGTNQR
FT                 WELVKEKRLCFCCFLRHRAQQCKSKKKCHVDGCESTHHVLLHTPTMSGSKV
FT                 EHTGQGSNHRIKASESAVMFHGSSASKTLFRYVPITLYSKSKSVRAYALVD
FT                 EGAECTLIERALADELELDGPATQLCLKWTGDITKNEPESMSVAVSISAPE
FT                 HNAIQYALKNVRTIANLDLPEQSIGPQLLKSRKHLSTLPILPYNNVKAQLI
FT                 IGLDNIKITAPLEIREGENDDVIAARSRLGWAVYGRPIVGDSTTPRLLHIC
FT                 QCSAARGMDEALKNYFSIESLGVSVSSHPLRSKEDERSMQIMEATTTYLED
FT                 EKRWQTGLLWRFDRMHLPDSYQMAVKRLKCLEAKMSKDPPLKEFMMNTMHD
FT                 YKQKGYIRRLKDSELVANTTSWFLPIFTVTNPNKKKTRLVWDAAAKVSGMS
FT                 LNDCLLKGPDTLASLMGVLIRFRERPIAVSGDIREMFHQVKVRLEDQPAQK
FT                 FLWRDGDSSRFPETYVMQVMTFGASCSPALANYVKNRNAERFVAEHPDAVK
FT                 AICENTFVDDWLQSVDTGAEMIQLAETVKRIHASGGFEMRRWTSNSKQVIQ
FT                 ALEDDCEELDKRISAQDEAQEKVLGLWWLPGQDLLTFVVTPNLLAKASKER
FT                 PTKRRVLSVIMSIFDPLGLLGFFNIRAKIILQNIWRSNIGWDDDLTNEDEA
FT                 DWQHWLDLVSNLNAVRIPRCMKWVSRAQAVQMHTFVDASMNAYAAVVFLRA
FT                 ELDGQVHCSLVASKTRVAPLKPVSIPRMELMAAVLGLRLAKCIQKEMSVRI
FT                 HRRTFWTDSKDVLYWIRSDARKFQQFVALRIGEILEESDVDSWRWVPSAQN
FT                 VADDGTKWTKTPEIHGSTRWFNGPPFLYLEESQWPQSEIGPALNMLYHAEE
FT                 QPNHTSSWRCILPDLQRFSKLEKLRAVQLCVLDFLRNITKKVRLDGGLDLQ
FT                 KTLLLKRSNEMDVIFIRICQEEEFYSEITCLRSGRRLTDRKSLLFKCSPYV
FT                 DDSGILRIKGRIDNIEGVEVCVKRPIILPRRHQLTYLLVEFYHRRYHHLHN
FT                 EIVVNELRQRYWVCGLRALVREVSNTCPACRIRRARPKPPGMGDLPIERLS
FT                 PYTPPFTYTGVDYFGPYDIVVGRRREKRWGVLFTCLTVRAVHLDIATSLST
FT                 DSYLCVLKSFVARRGCPRRMLSDNGTNFRGASRVLKDEIERISPALIERQY
FT                 PELEFTFIPPGSPHMGGSWERMVRSTKSILSEILPPSGLREEVLRAALADV
FT                 ESVLNSRPLTYVPLETSESEALTPNHFLIGHSSGLRERGLREQGGASLARG
FT                 FRVASQLADQFWKRWLREYLPTLTRRTKWFQPPLEPISVDDIVIIVDDGAK
FT                 RNCWTRGVVVDVHRSKDGQVRSAVVRTADGIITRPAVKLAKLDIKVGNTLH
FT                 GRS"
XX
SQ   Sequence 5752 BP; 1577 A; 1330 C; 1528 G; 1317 T; 0 other;
     tgataagtcg atcgcacgca gctgcacaag ctgcattttt gtcgaggttc attttcgttt        60
     tgtgcttgca gctgagcaga agtgaaagag aacagaagcg cgtgcggagc acgaatgtaa       120
     gtctcataat catgtaaaat ataggttgtt aaataatgaa agaataataa agatttcagc       180
     gttcgaatta tattatatcg taccgcctcg tacgaatcga attgaatcga gttgtttctt       240
     tcgacgctag aagtccctgc cgaatacgcg ccccggcacg agtctcggtg ccaacattct       300
     gaaatattct ctgcagcaga gagtgtccga gggattctct gctacggcgg agatttctgc       360
     gaagcaagcg acttgcaaag tcacaacctt agctgcctat agagagacac gtggtacaag       420
     agctagactc acacttagca gccataacct caaagcggat ttcatagtat tggtgtggcg       480
     agatggctga cggtgatgaa caagatgcaa gtgcgagaag gacgacaagt agtattcaac       540
     ccggtggaac tgcaacgctt gtaacggcat ggtcaacggg acaggctaac ggatcgcctg       600
     ttcctgctgg agtacaagat aaagtcgccg gtgtagaaaa aggtagcggg gcagcaatca       660
     tagaaactta tagcggctgt ccgtctacgt cgtccgctgc tactggtcca agggaaagtt       720
     caacaccaat gcagcaaaga actgagaaag tgggagctct tttcgaccct ttgggatacc       780
     agaacgtgat ctacaagcag aaacaggttg cggctaattg gagtgtacac cccagtttgc       840
     cgtatcaagc aaatacggcg gtgtttaacc aggctacgga gcccagtact gccgcgtaca       900
     tgggccacac aggtctggga gcgctcaata gatcgattga gcacgtgcca cggcagcaat       960
     ttgacaatgg attaggaaaa gtgcctcaga gggcaagccc tggatgcggt gcgtggaaaa      1020
     cttatgatcc cagctacagt gccgtatgct ataggcacat tgcgaatgtt gtatggccgc      1080
     tctgaaatag tacatgctgc tctgcagcaa aagctccgag aggaaccagc aataaagtcg      1140
     gacaacttga acaccgttat ccgactggcc ctagctgtcc aaaactactg cgcaacgata      1200
     gcggccattg gtatgcacga atatctttac gatcccgcgc tgctgaacga gcttgttgct      1260
     aagatgccca gcaatatgaa attggattgg ggccggcatc gaatgtcgaa tgaaggtagc      1320
     agtttggcca cctttgataa ctggctgttc aatgtggcaa tgtgcgccac tatggtcacg      1380
     ccctacgaga caccactggc tgataacgaa aagaagagct ccacgaaaac cactagagag      1440
     cgaatttttg tgcacaacac ggtagatagc cctgagggtt ctcagcaaca acgttcacaa      1500
     caggaacagg agagggtttc atgtgcgaag tgcgccggta accaccgtct atcagattgc      1560
     gacgacttca gatcaatggg tacaaatcag cgctgggaac ttgttaagga aaagaggctc      1620
     tgtttttgct gctttctacg tcatcgtgca caacagtgta aatcaaagaa gaagtgtcat      1680
     gtagatggtt gcgagtcaac gcaccatgtg ctgctgcata cgcctaccat gagtggtagt      1740
     aaagtcgagc acacgggcca aggtagcaac caccggatta aggcaagtga gtctgccgtt      1800
     atgtttcacg gcagctccgc aagtaagaca ctgtttcgat atgttccaat cacgctctat      1860
     agtaaatcaa aaagcgtgcg cgcatatgca ttagtggatg aaggagctga gtgtacgtta      1920
     atagaaagag cgcttgcaga cgagctggaa ttagatggtc ctgcgaccca gctgtgtctt      1980
     aaatggacag gggacataac caagaatgaa cctgagtcga tgtccgtggc tgtgagcatt      2040
     tcagctccag aacataacgc aatacagtat gccttaaaaa acgtgcgaac aatagcgaac      2100
     ttggacttac cagagcaaag tatcgggcca cagttgctca agtctcggaa gcacttatct      2160
     acgcttccta ttctgccgta taacaacgtc aaggctcagc ttatcattgg tttagacaat      2220
     atcaaaataa ctgcaccctt ggagatacga gaaggtgaaa acgacgacgt catagcagcg      2280
     cgaagcagac taggatgggc cgtatatggc cgccccattg tgggagacag caccacgcct      2340
     cggctgctac atatttgcca gtgcagtgcg gcgcgtggga tggatgaagc tctgaagaac      2400
     tatttttcaa ttgagtcact aggtgtgagc gtttcctcac atccgctgag atccaaagag      2460
     gacgaacgct cgatgcagat tatggaggca acaacaacct atctggaaga cgaaaagcgc      2520
     tggcagaccg gcctgttatg gaggttcgat cgcatgcacc tgccagactc ttatcagatg      2580
     gctgttaagc gcctgaaatg tttagaggca aagatgtcaa aagacccacc actgaaagag      2640
     ttcatgatga acacgatgca cgattacaaa cagaagggat atatccgccg gttgaaggat      2700
     agtgagttag tagctaacac tacatcgtgg tttcttccta tctttacagt caccaatccg      2760
     aacaagaaaa agacgcgcct ggtttgggat gcggctgcca aagttagtgg catgtcgctg      2820
     aacgattgtt tgttgaaagg tccagataca ctagcatctt tgatgggggt gctaatacgc      2880
     ttccgagagc gtcctatcgc agtatccggc gacataaggg aaatgtttca tcaagtcaag      2940
     gtgcgcctag aagaccaacc ggcacagaag tttctctggc gtgatggaga ttcgtcacgc      3000
     ttccccgaaa catacgttat gcaagtcatg acgtttggag catcctgctc gccagctcta      3060
     gcaaattacg tcaagaatcg caatgccgag cggtttgtag cggagcatcc ggatgccgta      3120
     aaggcgattt gcgaaaacac atttgtcgac gactggctgc agtcggtgga tactggagct      3180
     gaaatgatac agttagctga gactgtaaaa aggattcatg ctagtggcgg cttcgagatg      3240
     cgccgctgga catcaaattc gaagcaagtt atacaggcgc tggaagacga ctgtgaggag      3300
     ttggacaagc gtatcagcgc tcaggatgaa gcgcaagaga aggtcttagg cctgtggtgg      3360
     ctacctggac aagatctgtt gacgtttgtg gtgacgccga acttgctcgc gaaggcatct      3420
     aaggagcgcc caactaaaag acgtgttctg agtgtgatca tgtctatttt cgacccgctc      3480
     gggctgctag gattctttaa tatacgcgct aagatcatcc ttcagaacat atggcgatcc      3540
     aatatcggat gggatgacga cctcaccaac gaagacgaag ccgattggca acactggctt      3600
     gatctagttt caaatttgaa tgccgtccgc attccacggt gcatgaagtg ggtgagccga      3660
     gcccaggctg tgcagatgca tacattcgtt gacgccagta tgaatgctta cgccgcagtt      3720
     gtatttttgc gggctgaact tgatggccaa gtacattgca gtttggtcgc ctcgaaaacg      3780
     agagtagcac ccctaaagcc cgtgtccata cctcgaatgg aactgatggc cgcggtctta      3840
     ggtctgagac tggccaaatg tatccaaaag gaaatgtcgg tacgcataca tagacgaaca      3900
     ttctggacag attcaaagga tgtgctctac tggatccgtt ccgatgctcg aaagttccag      3960
     caattcgtag cgcttcggat aggagagatt ttagaagaat cagatgtgga cagctggcga      4020
     tgggtaccat cggctcaaaa cgtggcagac gatggtacga aatggactaa aacgcctgaa      4080
     attcatggct caaccaggtg gttcaatgga ccaccatttt tgtatctaga agaatcgcag      4140
     tggccacaat cggaaatagg ccctgcatta aacatgttgt accatgctga agaacaaccc      4200
     aatcacacgt cgtcctggag atgtattctg ccggatctgc agcgtttcag caagctagaa      4260
     aaattgagag ccgtacagct atgcgtactg gatttcctac ggaatattac taagaaggtc      4320
     agattggacg gaggactgga tctgcagaag acgctgctcc ttaaaagaag caatgaaatg      4380
     gatgtgattt ttatccggat ttgtcaagaa gaggagtttt atagtgagat cacctgctta      4440
     aggtcggggc gccgcttaac cgatcgcaaa agcttgctgt ttaagtgctc cccttatgtg      4500
     gatgactcgg gcattctacg tattaaagga cggatagaca atatagaagg agtcgaagtc      4560
     tgcgtaaaac gcccgataat tctgccaaga cgacatcaat tgacgtatct gctggttgag      4620
     ttttatcacc gcagatatca tcacctacac aacgaaatcg tcgtaaatga actgcggcag      4680
     cggtactggg tttgtggctt acgagctttg gtgagagaag tttccaatac ctgcccagcg      4740
     tgccgcatac gacgcgcccg cccaaagccg ccagggatgg gcgacctgcc aatcgaacga      4800
     ttatcgccct atactccacc gttcacatat actggagtgg attacttcgg cccctacgac      4860
     attgtcgttg gacggcgtcg cgagaagcgc tggggcgtgc tatttacatg cctcacggtg      4920
     cgcgccgttc acctggatat agctacgtcg ctctcaactg actcatactt atgcgttctg      4980
     aagtcgttcg tggccagacg cggctgcccc cgccgcatgc tgtcggacaa tggcacaaat      5040
     ttcagaggcg ctagcagagt attaaaagat gaaattgaac gtatatcgcc ggctctgatc      5100
     gagcgacagt acccagaact cgagtttacc tttatcccgc caggatcacc ccacatggga      5160
     ggatcgtggg aacgaatggt gcgctctaca aagtcaatac tgtcggaaat tctgccgccc      5220
     tctgggttac gagaggaggt gctacgagca gcattggctg acgtagaaag cgtgctcaac      5280
     tcaaggccac tcacttatgt tcccttggag acatctgagt ccgaagccct gactccaaat      5340
     cattttctta taggtcattc aagcggattg cgtgagagag gattacggga gcaaggcgga      5400
     gctagcttgg cacgaggctt ccgagtcgcc agtcaattgg ctgaccaatt ttggaagaga      5460
     tggctgcgcg agtatctgcc tacactcacc agacgtacta agtggtttca accgccactc      5520
     gaaccaatat cagtcgacga catcgtcata atagtggacg acggtgccaa gcgaaactgt      5580
     tggacaagag gagtggtcgt agacgtgcac cgttcaaagg atggccaggt ccgaagtgcc      5640
     gtggtgcgaa ccgccgatgg aattattact cgccccgccg tcaagctagc taagcttgac      5700
     attaaagttg gtaacacact gcacggacgt tcgtgaatta cggggtgggg aa              5752
//
ID   BEL-4_DVir-LTR repbase;    DNA;    INV; 116 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DVir_;
KW   BEL-4_DVir-I; BEL-4_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-116
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1782-1782 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 116 BP; 27 A; 25 C; 28 G; 36 T; 0 other;
     tgttacgggg cgaagtgaaa atagctgttg actaagtcct actgggtctc gcattttttc        60
     tgtaagcagc cctcgctgct tacactggaa gcgcaccgtt agaattagtt tttaca           116
//
ID   BEL-4_DWil-I repbase;    DNA;    INV; 5548 BP.
XX
AC   scaffold_180701;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DWil_;
KW   BEL-4_DWil-LTR; BEL-4_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5548
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180701; Positions 1220922 1226469.
XX
CC   Positions [4487-5077] - Integrase core
CC   'AGCTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..5455
FT                 /product="BEL-4_DWil-I_1p"
FT                 /translation="MAEKLLPLATEQITLLTSLEKSLARYKSEESGHTESH
FT                 LEARLDSIAHLHADFQRNHHQLIQERDNAEIKGRYFDKDIRDCFEETYIMG
FT                 VAEIRNELQRHKDRRIPASTAFDESCLHQTVHEQMGPCLEEVKLPTVKLPT
FT                 FSGKFIEWPAFKEVFLTRVHHCDKLTDLHRFHYLKDSLVGDAAKDIEHLTL
FT                 IAANYEVAWRMLINLYDNKRVLFLHYMDVFDQQLPIKYGDAESLRRFVQTS
FT                 RSCVNSLEKTGVDVRQQSEILVYYMMKRLPNQLRVDWERSISSTQNLPSFE
FT                 ELSQYLETQYRTMITASAGNIEGTLSRDRHRNAKPGVHGLRANQNYTKASF
FT                 VTRETDLCIVCQGDAHLIGVCRIFQEMRLSERKACVVRHRLCFRCLRPNHR
FT                 IDACDSVVNCEKCQGRHHTLLHVDKSGCERPLGTLRKGVIPTASANALIGK
FT                 STTKTAVRHKDEVLLPTAMVWVESIEGYPLQFRAFLDQGSQVSFISEIAAQ
FT                 QLRLRRKQAHITITGLADTKITDAAAEVELVIRSIYNPHAKYKLLASVIPL
FT                 VSKRMPIKRLPFEEWTHLKGLPLADPNFFSPQGVDILLGNDVYDELMLGEV
FT                 HRGIRGMPLAQNTHLGYIVSGKTNQEAGRRSSYTITVRRKEADEILEQLLC
FT                 KFWELEQFDEEPRGVSVEDNWCEDFFVKTHSRMPSGKYVVRLPFLTYLDES
FT                 MVIGESYKSALKRLHSLDRRLRNDASLKNAYVGTINEYLELGQMERVTSRA
FT                 SKTGNPALGGVDHCYLPHHPVIKESSSTTKVRVVFDGSSKTSNGKSLNEIL
FT                 AIGPKLHVHLQGIILNWRGLKWVFMADVEKMYRCINIPPDDAQYQRILWNP
FT                 ETSDYVEEYACTTVMFGTSSAPYLAMRVMKQLAMDECEKYPLAVDVINHQM
FT                 YVDDILSGGDSIAETEDVKNQVIGMLRSGTFELRKWASNCTKLLENIPVEH
FT                 RESSGLLHMEGNDTIRTLGLYWSPKEDEFRFALHVVPPMSSPTKRTILSAI
FT                 ARLFDPMGWLSPIIITAKILMQQLWKEKIGWDSTLPDTIKREWEKFVKELP
FT                 NIVTIRIPRHVTWGLPGGVAELHLFCDASSRAYGAAAYLRFPIGEDKYHTE
FT                 LLLSKGRVSPTKQQLTIPRAELCAALEAAKMYKYLKENLRININYSNTIFW
FT                 SDSMITISWIRGGAANWKVFVSNRINKILEISDERQWRHVASKDNPADYLS
FT                 RGTSATKLASCELWWHGPSWLQGSDIEWPCNAIDQDSLSVVDTEVKKVTCH
FT                 KISVEEMPSVAFISKYSSYTRLVWIISYIKRFVYNCRTSVAERRGPGLSIV
FT                 ELEEGLRELIRMVQKDCFNSEWKALSEGRVIAKDSILLSLNPYFDSNERVL
FT                 RLGGRLRDSLLPINEKYPYILPYKHPFTDLVISYSHICTLHGGTSLTLNFI
FT                 RKKFWIVNGRNAVRFGIHKCITCFKMKPQFAGQKMGMLPAVRVRPSRAFSS
FT                 VGVDYAGPVNISPCKGRGRVSQKGYIAVFVCLVTKAIHLEPVGDLTSDAFI
FT                 GAFNRFIGRRGLCTDVYSDCGTNFIGANKKLQVDKLAYCSYITKHIAPTLL
FT                 RKGINWHFNPPSAPHFGGLWEAGVKSMKYHLKRTLGEQVLTFEEMATVLAQ
FT                 IESCLNSRPLCPLSNDPDDLMVLTPGHFLMGEAPLALPAPELAKVTLIDRW
FT                 KNCQYYAQQFWRRWNSEYLSRLQRRPKWLQTKENLTVGCIVLIRDERFPSH
FT                 QWPLGRVMETHAGPDGLVRVVTLKTVKGLMKRPVAKLCPLPIQENWIENDT
FT                 SPTPKR"
XX
SQ   Sequence 5548 BP; 1681 A; 1040 C; 1386 G; 1441 T; 0 other;
     tatttttggt gccgaaaccc gggaggaatg atcttggcga ttggatttag agtgtgattg        60
     ccagtggata gactgattcg ggtgagtaca atttaacgtt gatgtgtttg ggtaggtgtt       120
     cattatggct gaaaaactgt taccgttggc tacggagcaa atcacattgc tcacttcgct       180
     ggagaagtca ttggcgcggt ataaatcgga ggagtcggga cataccgaga gtcatctgga       240
     agccagattg gactcgattg cccaccttca cgcagatttt cagcgcaatc atcaccaact       300
     gattcaagaa cgagataatg cggaaataaa gggcagatat tttgacaaag acatcagaga       360
     ctgtttcgaa gaaacctaca taatgggagt agctgagatt cgaaatgagt tgcagagaca       420
     taaggatcgg agaatcccgg cgtcgactgc atttgatgag tcttgtttgc atcagacggt       480
     gcatgaacaa atgggaccat gtttggagga agtgaaactc ccaacagtta aactgcctac       540
     cttcagcggg aaatttattg agtggccggc gtttaaagag gtgtttttaa caagagtaca       600
     ccactgcgac aagctgacgg acttacatcg ttttcattat ttgaaggatt cgttggttgg       660
     agacgcagct aaggatattg aacatctaac gctaatagcg gcgaactatg aagtggcttg       720
     gagaatgttg ataaatttgt atgataacaa acgagtgtta tttttacatt acatggatgt       780
     gttcgatcag caattaccaa taaaatatgg agatgcggaa agtttgagaa gatttgtgca       840
     aacttcccgc tcatgtgtga attcattgga gaagactggt gtggatgtgc gacaacagtc       900
     tgaaatttta gtgtactaca tgatgaagag attaccgaat caattaagag tggattggga       960
     gcggtcaata tcttcaacgc agaatctgcc gagctttgag gagctcagtc agtatcttga      1020
     aacacagtac agaacaatga ttacggcgtc agcaggtaat atcgagggaa ctctatcacg      1080
     ggatagacat cggaatgcaa agccaggtgt acatgggtta cgagctaacc agaactacac      1140
     aaaggcttca tttgttactc gagagacaga cctatgcatt gtgtgtcaag gggatgcaca      1200
     ccttatcgga gtatgcagga tattccagga gatgaggcta tcggaacgaa aggcgtgtgt      1260
     agtaaggcat cgactgtgtt ttcgatgcct tagaccaaat caccgaatag atgcatgtga      1320
     cagtgtggta aattgtgaaa aatgtcaagg acggcatcat acactactcc atgtagacaa      1380
     atcaggatgc gagaggccgc ttggcacact aaggaaggga gttatcccaa cagcatctgc      1440
     gaatgcttta attggaaaga gtacaacaaa aactgcggta aggcacaaag acgaggtttt      1500
     attaccaaca gcaatggtgt gggtagagtc gatagaaggc tatcccttac agtttagagc      1560
     gtttttggat caaggttcac aagtttcgtt catttcagag attgcagctc agcagctacg      1620
     tttacggcgc aaacaggctc acatcacgat tactggatta gcagatacaa aaattacaga      1680
     tgcggcagca gaggtggagc tagtcataag atcaatctac aacccacatg cgaaatacaa      1740
     gctgctcgcg tcagtaatac ctctagtgag taagcgcatg ccaatcaaac gactgccgtt      1800
     tgaagagtgg actcatctga agggcttacc gttggccgac cctaacttct tcagtccaca      1860
     aggagttgat attttgttgg gaaatgacgt ctacgatgag ctgatgttag gagaagtgca      1920
     tcgaggaata cgtggtatgc ctctggcgca aaatacgcat ttgggataca ttgtatcagg      1980
     aaaaacgaat caagaagctg gtaggagatc gtcctacacc ataacggtac gaaggaagga      2040
     agctgatgag atacttgaac aattgttatg taagttttgg gagctagaac aattcgacga      2100
     ggagccacgt ggggtttcag tagaggataa ctggtgcgaa gatttcttcg ttaagacaca      2160
     tagccgaatg ccgtctggga aatatgttgt tcgtcttccc tttcttacat acttggacga      2220
     atcaatggta attggagaat catataagag cgcgttaaaa cgattacatt ctctggacag      2280
     acggttgcgt aacgatgcga gtttgaagaa cgcttatgtt ggcacgataa atgagtatct      2340
     ggagctgggt caaatggaac gtgtaacgtc acgggctagt aagacgggca atcctgcatt      2400
     ggggggagtc gatcattgct acctaccgca tcacccagtc ataaaggaat cgtcatcaac      2460
     tacgaaggta cgagttgtct tcgatggatc gagcaagacg agtaatggaa aatcgcttaa      2520
     tgagattcta gcaataggtc caaaattgca cgtacatctt caaggaatca ttctcaattg      2580
     gcgagggcta aaatgggtat ttatggcgga tgttgaaaaa atgtacagat gtattaatat      2640
     tccacccgac gacgcgcagt accagcgtat tctatggaat ccggagacaa gtgattatgt      2700
     ggaagaatat gcctgcacaa cggtgatgtt tggaacgagc tccgcacctt atttagccat      2760
     gagagttatg aaacaattag ctatggatga atgcgagaag tatccactgg cggtggatgt      2820
     tataaatcat caaatgtatg tagatgacat actgtctggt ggcgacagta ttgcagaaac      2880
     ggaggatgtc aagaaccaag tgattggaat gcttcgtagt ggtacattcg aactacggaa      2940
     gtgggcgagt aattgcacaa agctattaga gaacatacca gttgagcatc gagaatcaag      3000
     cggattgtta cacatggaag gtaatgatac tattcgcacg ttaggtctat actggagtcc      3060
     caaagaagat gagttccgtt ttgctttgca tgtcgttcca ccaatgagct caccaacaaa      3120
     gaggacaata ctatcagcaa ttgcacgact gtttgatccc atgggatggc ttagtccgat      3180
     aataattact gccaaaattc tcatgcagca actgtggaag gagaaaattg gctgggatag      3240
     cacactaccg gacactatta agagagaatg ggagaaattc gtaaaagagt taccaaacat      3300
     agtaactata cgaataccac ggcatgttac atgggggcta ccgggtggtg tggctgaatt      3360
     gcacctgttt tgcgatgcct cgtcacgagc atatggagct gcggcttact tgcgcttccc      3420
     aattggagag gataagtatc acacagagtt gctattgtca aaggggagag tatcgccaac      3480
     taaacaacaa ctaaccatac ctagggcaga gttatgtgct gcgcttgaag cagccaaaat      3540
     gtataagtat ctaaaagaga atctaagaat taacattaat tattcgaaca ctattttttg      3600
     gtcagattct atgataacca tcagttggat ccgtggtgga gctgccaact ggaaagtatt      3660
     tgtgtccaat cgaataaaca aaatcctgga aatctcagac gaaaggcaat ggagacacgt      3720
     cgcctcgaaa gataaccctg cagattatct aagccgtggc acgagtgcaa ccaagttggc      3780
     atcgtgtgaa ttatggtggc atgggccatc atggttacaa ggatcggaca tcgaatggcc      3840
     ttgtaatgct attgatcagg attcgctgtc ggttgttgac actgaagtta aaaaggtgac      3900
     gtgccataag atatcagtgg aagaaatgcc aagtgtagca tttatcagca agtattcatc      3960
     gtatacacga ctcgtctgga ttatatcata tataaaacgt ttcgtatata attgtcgaac      4020
     atctgtggca gaacgaagag gacctggact ctcaattgtg gaattagaag agggcctacg      4080
     tgaattgatt aggatggtgc agaaggattg ttttaactct gaatggaagg cgctatcgga      4140
     aggcagggta atagcaaagg acagcatact actgtctctt aatccgtatt ttgattcgaa      4200
     cgaacgtgtt ttacgtctcg gaggcaggct ccgagattcc ctgttgccca taaatgaaaa      4260
     atatccttat atattaccgt ataaacatcc tttcacagat ctggtcatat cttacagtca      4320
     tatttgcacc ttgcatggtg gaacctcact aacgctgaat tttataagga agaaattctg      4380
     gattgttaat ggacgcaatg cagttcggtt tggaattcat aaatgtatca catgttttaa      4440
     gatgaagcct caatttgcag gtcagaaaat gggaatgtta ccagcagtac gggtacgccc      4500
     ttctagagca ttctcatccg ttggagtgga ctacgctgga cccgtaaata tttcgccctg      4560
     caaaggaaga ggacgtgtat cccagaaggg atatattgct gtgttcgtat gtctagtgac      4620
     aaaggccatt catttggaac cagttggaga tctgacctca gatgcgttta taggagcatt      4680
     taaccgtttc attggcagac gtggcctatg cacagacgtt tatagtgact gcggtactaa      4740
     ttttattgga gccaacaaaa aattgcaagt ggacaaactg gcatattgtt cgtacattac      4800
     gaaacatatt gcgccaacat tattgagaaa aggaatcaac tggcatttca acccaccatc      4860
     agcgccacac tttggtggat tgtgggaggc tggagtgaag tccatgaagt atcatctgaa      4920
     gagaactctc ggagaacaag ttttaacatt cgaggaaatg gcaactgtgt tggcacagat      4980
     tgagtcttgc ttaaattcaa gaccgttatg tcccctatca aatgatcctg acgatttaat      5040
     ggtattaaca cccggtcact ttctgatggg tgaagcgcct ttagcacttc ctgctccgga      5100
     attggctaaa gttactctga ttgatcgatg gaagaattgt caatattatg cacaacagtt      5160
     ttggagaaga tggaactcgg aatatttatc acgattacaa aggagaccaa aatggctgca      5220
     gaccaaggaa aatctaacag ttggatgcat agtgctcatc agggacgagc gtttcccttc      5280
     tcatcaatgg cctctaggtc gcgttatgga gacacatgca ggacccgatg gactagtgag      5340
     agtggtgact ttgaagacag tcaaaggact catgaaacga ccggtagcca aactctgtcc      5400
     attgcctatt caggagaatt ggatagagaa tgacaccagc cctacaccta agcgttaaat      5460
     tgttactttc tcgtttcagt tttctttcgc aggagtcttc cagacgtgaa tttgatgatg      5520
     aagatcgtca tcatcaaagg ggggagaa                                         5548
//
ID   BEL-4_DWil-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   scaffold_180701;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DWil_;
KW   BEL-4_DWil-I; BEL-4_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-438
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180701; Positions 1220484 1220921.
XX
SQ   Sequence 438 BP; 128 A; 94 C; 97 G; 119 T; 0 other;
     tgtttaagct gcaactgaag ccagactctc tttgctaaaa agagaaaacg aacgaagaga        60
     gagagagaga gaccaagaac agcgcaagtt actttgaagt gacaaacttg gagatccgtt       120
     acttcaattc ttttctttct tatttcttct atggaaattt ccagaacttt gaattttgta       180
     aaagacagcg tggtttgctg tacttgaatt actcttgaaa ttaatctcgg tcgatgcggt       240
     tgcaccttct gtgcccgccg acaattgtac tatagtttta ggttaagaaa ataaagcaac       300
     cgattgaagt caacctggtc atctcatttc ttgccaatcg cgagtgcctc aaagccgcct       360
     cggtggaaat catccgaagg ccgcatcata taaagcgagc agtttggggc tccgcaaggg       420
     cgcagccgtt agccaaca                                                     438
//
ID   BEL-4_DYa-I repbase;    DNA;    INV; 6566 BP.
XX
AC   .
XX
DT   19-SEP-2011 (Rel. 17.09, Created)
DT   19-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DYa_;
KW   BEL-4_DYa-LTR; BEL-4_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6566
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1783-1783 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5431-6006] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1193..3844
FT                 /product="BEL-4_DYa-I_2p"
FT                 /translation="MEKEKEVSAKLNSKLIVAMQKHDRVMSDIGRMKTAFE
FT                 EKTISFDSFQLEYRMQLLETYCEKLMDIQSDIDVLNPGNDLRASVEDMCII
FT                 TKALYRSAMSRVEAPRLSHGDNSGFRHSSYLPKMNLPKFSGKHSDFKNFIS
FT                 LFESLVHNDPSLTNIEKFNHLLTCLTDDALGTVKAFQISDLNYEKALASLK
FT                 NVYDNKCLIFFDTISQLFDLPQVSKPSASGLRSLIDEISALYSSLQSLGSE
FT                 KDINNAIFIHIAMSKVDHTTKSRFEEQLDYNTLPTWSDCAIQLNRRYQHLA
FT                 AEESTKSKGKPSQASNKGYSKSSFSCTQTDRRPDSKCRYCSATNHSLGSCQ
FT                 PFMALSVIQRFDFTKHNRLCINCLNPGHPVKKCKATKCRVCSKPHNTLLHR
FT                 YGVEQQPFSSGSVPQVHVQAPSVAVDHNNQAHSCHVASTDQVILATAVVKV
FT                 RDRFGQFQLARALLDSGSQINFMAEDLAQRLRLHRQESYLNITTVGKNDSV
FT                 VRHKVHTSIHSRVNAHSFATNFWVLRSISSYQPDHEVNCAQWRIPANIELA
FT                 DPRFHKPAKVDLLIGAESFFDLLSVGQIKLGSEHPSLQKTLLGWIVSGKFT
FT                 QRASKNAQVCSVFGNENVSSLDSLVERFWELEHVPERSKAVYTAEQLACEQ
FT                 HFEQTVHRLSSGRFEVKLPFKKDPSVLGLSFESTKRRFLALERKLANNREL
FT                 HDMYQEFMREYLNLGHMSLLPTPPPEKHYYIPHQCVLRPDSSTTKLRVVFD
FT                 ASSKTSTSISLNETLMVGATIQRELYAILARFRLHKYALTADISKMYRQVN
FT                 IANEDRDFQLIVWREKSTQALQTYRLNTVTYGTASAPFLAIRCLFELSKIY
FT                 AESHPVASEVISSDFYVDDMLTERTVLKSWR"
FT   CDS           3925..6426
FT                 /product="BEL-4_DYa-I_1p"
FT                 /translation="MTNQGSEKSLIFNTSESVKTLGMRWNPQNDAFHYCLE
FT                 DSFQSLPPTKRNILSVTARLFDPLGLLCPLITRAKILLQELWRQKLDWDES
FT                 VPMNLHTSWNEFKQNLLAIDKISIPRYICLSGYDTVQIHGFADASSHAYGC
FT                 CIYIRTVAGTNRLSRLLTAKSRVSPLKTKSIPRLELCAAHLLAKLWSQVSP
FT                 LLNKLELESINFWSDSQVTLYWLKRDPSTLATFVANRVSEIQELTENVVWR
FT                 HVPTEENPADLVSRGTDLEGLRCTLWENGPEFLLRNPSEWPRSHQIEVSTE
FT                 LQFSENKKSVAVCSVTKNKPNVFIELVGRCSSFSKLLRIMAYVNRFVQGKK
FT                 RQREVVISANELKLSFLRMVQIFQKAEFSSEYVKLEKSECLSPHLQRLNPF
FT                 IHTSDLEGVTFNLIRVGGRLLNAPIPYDAKFPLLLSSKSEFVSLFLRNLHR
FT                 THYHAGVKVMVSLLRQQIWLINAREACTKIVRSCVHCFRYKPVLMSQIMGN
FT                 LPADRVRMERPFLVCGVDFCGPFYVSLKVRGRPPIKTYVAVFVCFSSKAVH
FT                 LELVVDLSTDSFLSVFKRFVGRRGLPEKVYSDNATNFVGACNVLKELSEAF
FT                 HRSRDELSGYAAQRGVEWCFIPPRSPHFGGLWEAAVKSAKTRLLRGVGNAK
FT                 LTTDELSTHLVEVEALLNSRPIASPGNDPNDGEALTPGHLLIGQPLITLPQ
FT                 ESGTGGVCSKASCAYLKRWRMLSALKQQFWDGWSKDYIASLQQRNKWSVGC
FT                 RDLEVGCLVVVHEDNVPPQRWLTGRVVATTAGEDGRVRVAEVRTSGGVIKR
FT                 AIHKLALLPVHTAPVEEIKEPEAFNGAGMLEQ"
XX
SQ   Sequence 6566 BP; 1868 A; 1380 C; 1464 G; 1852 T; 2 other;
     gtccaatttc gtaacaaatt ttcttcggga aaactctccc gatttttcat ggcgcccgaa        60
     cagggactac ggctaacatt tatttaattt ttgcgtgcga aaaaacgaac aaaatagtgc       120
     atttttcgtc gtctcggcac ttgttctgtt ttttctctat tgttggcgaa ataacctagc       180
     tggtggaatt cggcgaattt tttggatttg gasggatktg gacgtttgga tggaaaggaa       240
     agtcattgga aattatgcca aataataacc aggtattcag tgccaaaaat taaaaataat       300
     aagcactcca ctttttgtgt gtattgtgtg cgtttataat tcttggcata tgtggtaaat       360
     tggaaaacca atttaaatcc caaacaaacc accaccccca aataaaaata tataataaaa       420
     agtgaactgc ctttgacaaa acttatggtg ttaatttctg tgaaaatttg gagaaattta       480
     tgtgcgttaa atacatacgg tcaaactgca aaagttcagt aaacctacat acatacatat       540
     acataacgcc agtttgccgc caatttcgtt tcccttttgt gcagttgcag agcagttatt       600
     tgtctgctat atacacggtg tcagtggcca accatatata cctcgcacat tggttatttt       660
     cagcagtaca tactgtggca gtggctctca aaccgtacat agtggaaagt tcctgcaaaa       720
     ctcggcagtg aacttaagcc ctgctcacat ttgtatgtac atctatgcat ttgcgtgaac       780
     attaattcga tttatagtga gatatttggc cttagaaaat tgtattacat tttttgaatt       840
     tctcggcggt gtttgtgggc atatttaacc cgaatgggat ccacttaaat atttcggaca       900
     gtttatgtgt cataaaattc aaattttgtg cattttcggc tttggtttta cccatcaacg       960
     gtacatacac atacaaacta cacattttgt gcatttcggt ggttcttcgg cacagttaac      1020
     cctcatataa cccaataaaa tttattgttg aatttgaatt tggaaatcaa ttttttatat      1080
     ttgggcatcg attaaaaatt ggtttcgtgc gcatttacgt gtgtgattta acccttgttt      1140
     cggaaattta ctagtatttg gactattttt atttattcca attcattcaa aaatggaaaa      1200
     agaaaaggaa gtatcggcaa agcttaattc taaattaata gtggctatgc aaaaacacga      1260
     tagggttatg agcgatattg gacgtatgaa aactgcattt gaggaaaaaa ctatttcgtt      1320
     cgatagtttt caactggaat accgaatgca acttctcgaa acatattgtg aaaaattaat      1380
     ggatattcag tcagacattg atgtgctaaa cccaggaaat gatttaagag cgtctgtcga      1440
     ggatatgtgc ataatcacaa aggctttata tcggtccgca atgagtcgag tcgaggctcc      1500
     gagacttagt cacggggata acagtgggtt tcgtcattcg tcctatttac caaaaatgaa      1560
     tttgcccaaa ttcagtggaa aacattccga ctttaaaaat tttataagtc ttttcgagag      1620
     cttagtgcat aatgacccgt ctctaacaaa tatcgaaaaa ttcaaccatt tgctgacatg      1680
     tctaacagac gatgcattag gaactgtcaa ggcgtttcaa atttcggatt taaattatga      1740
     gaaggcattg gctagtctga aaaacgttta cgacaataaa tgcttgattt tttttgacac      1800
     catttctcaa ttgtttgacc tccctcaagt atcgaaacca tctgcatcag gcttgaggtc      1860
     ccttattgac gaaatatcgg ccctttattc gtcattacag tcgttgggta gtgaaaagga      1920
     cataaataac gcaattttta ttcacattgc aatgtccaag gtagatcaca ctacaaaatc      1980
     ccgatttgaa gaacagcttg attataacac gctaccgaca tggtccgatt gtgcgattca      2040
     attgaatcga agatatcaac atctagctgc tgaggagtca accaaaagta aagggaagcc      2100
     tagccaagct tccaataagg gatattccaa atcctccttc tcatgcacac agacagaccg      2160
     cagaccggat tcaaagtgtc gatattgctc agccacaaat cacagtttag gcagttgtca      2220
     acctttcatg gctttatcgg tgattcagcg gttcgatttt acaaaacaca atcggttgtg      2280
     cataaattgt ttaaatccag gtcatccagt gaagaagtgc aaagcaacaa agtgtcgtgt      2340
     ttgctctaag cctcacaaca cacttcttca cagatacggg gtagagcagc aaccattttc      2400
     gtcgggatca gttcctcaag tgcatgtcca ggcaccttca gtagcagttg atcataataa      2460
     tcaagcccat tcttgtcatg ttgctagtac tgaccaagtt attcttgcta ctgctgtcgt      2520
     taaagtacgg gatagatttg gacagtttca attagcacga gcgctgttag attcaggatc      2580
     tcaaatcaat tttatggcag aggacttagc acagcgtttg cggttacaca ggcaagaatc      2640
     atatctaaat atcactactg tagggaaaaa cgactcggta gtacggcaca aagtccacac      2700
     gtcaattcat tctcgcgtca atgctcatag tttcgctacc aatttttggg tgttaagatc      2760
     aatttcatct tatcaacccg atcacgaagt caattgtgcc caatggagaa ttccggcaaa      2820
     cattgaactg gcagaccctc gttttcacaa gcccgcaaaa gtggacttac tgattggcgc      2880
     agaatccttt ttcgatcttt tgagcgtagg ccaaataaaa ttgggttctg aacatccttc      2940
     acttcagaaa actttactag gatggattgt ttcgggaaag ttcactcaac gcgcatcgaa      3000
     gaacgctcag gtatgcagcg tctttggcaa tgaaaatgta agttctctcg actctctggt      3060
     ggaacgattt tgggaattgg aacacgttcc tgagagatcg aaggctgttt atacagctga      3120
     acaacttgct tgcgagcagc actttgagca aaccgtacat aggctttcgt ctggtcgttt      3180
     tgaggtgaag ttgccattta agaaagatcc gagtgtctta ggcttatcct tcgaatcgac      3240
     aaagcgcaga tttcttgcat tggaacgcaa gcttgcaaat aatcgcgagt tacatgacat      3300
     gtatcaggag tttatgagag agtatcttaa ccttgggcac atgtcactgc ttccaacacc      3360
     tcctccagag aaacactatt acattccaca tcaatgtgtc ctgagacctg atagtagcac      3420
     cacaaagttg cgagttgttt ttgacgcttc aagtaaaacg tcaacctcga tctcattaaa      3480
     tgagactcta atggtgggtg caactattca gagggagctt tacgccattc tggcaagatt      3540
     tcgtttgcac aaatatgcct tgacggcgga tatctcaaag atgtataggc aagttaacat      3600
     tgcaaatgaa gatagagatt tccaacttat cgtgtggagg gaaaaatcaa cgcaagctct      3660
     ccaaacctat cgcctcaaca ctgtcactta tgggacagcc tctgctccgt ttctggccat      3720
     ccgctgcctc tttgagctat caaaaattta cgctgagtca catcctgttg catcagaggt      3780
     gatttcaagc gacttctatg tcgacgatat gctcacggag cgaacagtat tgaagagttg      3840
     gaggtaattc gcaaagaagt gacgaaggtt ttggagttag ggggttttca tctagccaaa      3900
     tgggcaacaa atcacccaag tttgatgacc aaccagggat cagaaaaatc tcttatattt      3960
     aacacttctg aatccgttaa aacgcttggg atgagatgga accctcaaaa tgatgcgttt      4020
     cattattgct tggaggattc gtttcagtcc ttaccaccaa ctaaacgcaa cattttgtcc      4080
     gtcacagctc gtttgtttga ccctttggga ttattatgtc cattgattac acgagcaaaa      4140
     atcttgcttc aggaactgtg gcgacagaaa ttagattggg acgaatcggt tcccatgaac      4200
     ttgcatacca gttggaacga atttaagcag aatttactag caattgacaa gatctccatt      4260
     cctcgatata tctgtctgtc tggctatgac actgttcaaa tccacggatt tgctgatgca      4320
     tcgagccacg cctacggctg ttgcatttat attcgtaccg tggctgggac aaataggtta      4380
     tcaagacttc taaccgcaaa gtctagagtg tccccactaa aaacaaagtc aattccaagg      4440
     ctcgagctgt gtgcagcgca tctgctggcc aaattatggt ctcaagtatc tcctttgctt      4500
     aacaaattgg agcttgaaag cattaacttc tggtcggact cacaagtcac attatactgg      4560
     ttaaagaggg atccatccac tctagcaaca tttgtcgcaa atagagtatc tgaaattcaa      4620
     gaactcacag agaatgtagt ttggcgtcat gtgcccacgg aagaaaatcc ggctgattta      4680
     gtctcacgtg gaacagactt agaaggtttg aggtgtactc tatgggaaaa tggaccggag      4740
     ttcttactcc gaaatccaag cgagtggcct cggtcccatc agattgaagt ttcaacggag      4800
     ttacagtttt ctgagaacaa aaaaagcgtg gcagtatgtt ccgtcacaaa aaacaaaccg      4860
     aatgtcttta ttgagcttgt tggaagatgt tcatcattta gtaaactctt acggatcatg      4920
     gcctacgtaa atcgattcgt tcaagggaag aagcgtcaac gcgaggtcgt catttcggct      4980
     aacgaactga agttgtcgtt tcttaggatg gtccaaatat ttcaaaaggc ggagttcagt      5040
     tcagaatacg tcaagttgga gaagtctgaa tgtttaagcc cacatctaca acgtttaaat      5100
     ccttttatac ataccagcga tttagaaggt gtgacgttca acttaatccg agttgggggg      5160
     agattgctaa atgcaccaat tccgtatgat gccaagtttc cactattact gtcctcaaag      5220
     tcagaatttg tttcgctatt tcttcgcaac ctgcatcgga ctcattacca tgccggtgtc      5280
     aaggtgatgg tttcactttt gaggcaacag atatggctga tcaatgcgcg agaagcatgt      5340
     acgaaaattg tccgtagctg cgttcactgt ttccggtata aaccagtgct gatgagccag      5400
     ataatgggca atttgccagc cgatagggtc cgaatggagc gcccctttct agtttgcgga      5460
     gtagattttt gtggtccatt ttatgtgtcc ttaaaggtcc gcggtagacc tcctatcaaa      5520
     acttatgtgg ccgtttttgt gtgcttttcg tcaaaggctg ttcaccttga acttgttgtc      5580
     gacctatcca ctgacagctt cttatccgtc tttaaaaggt tcgtcgggag gagagggctg      5640
     ccggagaagg tgtacagcga caacgccacg aacttcgtag gagcgtgcaa cgtgctgaag      5700
     gagctgagcg aagcgtttca ccgcagtcgg gacgagctga gcggatacgc ggctcagaga      5760
     ggcgtcgagt ggtgtttcat accgccgagg tcaccacact tcggaggact ttgggaagca      5820
     gccgtcaagt ccgccaaaac ccggttgctg cgaggagtcg gcaacgccaa gctcacaacg      5880
     gacgagttga gcacccacct ggtcgaggta gaggcgctgc tcaattcgcg tccaatcgcg      5940
     tcgccgggca acgatcccaa cgatggagag gccctaacac caggacacct actaatcggg      6000
     cagcctctga tcacgctgcc gcaagaatcc ggcacaggag gagtttgcag caaggccagt      6060
     tgcgcgtatt tgaagcggtg gcgaatgctg tccgctctca agcagcagtt ttgggacggc      6120
     tggtccaagg actacatcgc cagcctgcag cagcgcaaca aatggagcgt cggatgccgc      6180
     gatctggagg tcggttgcct agtggtcgtc cacgaggaca acgtgccccc gcagcgttgg      6240
     ctaacaggcc gcgtggtggc aacaacagca ggcgaggacg gtagagtgcg tgtggcggaa      6300
     gttcggacgt caggaggcgt catcaagcgc gccatccaca agctggcatt gctgccagtg      6360
     catactgctc ctgttgagga gatcaaagag ccggaggcct ttaacggggc cggaatgttg      6420
     gagcagtaat ttatgttaaa aagaaatatt tgtaatttgt aaacttagat gaaatgtaaa      6480
     catagcataa cagctgatat gagagcttaa ttgtagttgt gctcactggg ttactcttct      6540
     actgagaagc tttatcagtc gtttcg                                           6566
//
ID   BEL-4_DYa-LTR repbase;    DNA;    INV; 114 BP.
XX
AC   .
XX
DT   19-SEP-2011 (Rel. 17.09, Created)
DT   19-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_DYa_;
KW   BEL-4_DYa-I; BEL-4_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-114
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1784-1784 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 114 BP; 30 A; 32 C; 26 G; 26 T; 0 other;
     tgagcataac cgtgaagctt acacagtcgt aaaactgaag tcgaagccgc cggctgcgcc        60
     cgcgcaaata aacgtatttg gatcgaacct ctcgtctatt tttgctagcc gcca             114
//
ID   BEL-4_FoCa-I repbase;    DNA;    INV; 5644 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5644
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2585-2585 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           326..5548
FT                 /product="BEL-4_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEDLKATRTPFRRKFTRTLNELKIILDSDNPDEEEVE
FT                 VKMERMKVAIENLQLSDDKILAKMLADKCSEEEYQAEYDSMDKYRDEWSDF
FT                 CVKVRRVFHLPGVLSESEAGSSSQSTTLKKNRTYKLPKIEIKKFAGEVTEW
FT                 ISFWSQFEKIHLDEELHDCDKFQYLVQSMVPGSKAAKLVESWPQSAKNYPK
FT                 VIEAMQDRFGDKVLLTEVYVRKLQQLVISNAGKKNENISLASMYDDLESNL
FT                 RGLESLGVTFKESAAFLYPMIESGLPIELVKVWQRSALSGYGDEEIKPVEE
FT                 RLTCLMKFIRAEVKGAQRLTFVIPSQKQPEKDKKKDNHRGEGYHKSDVATA
FT                 AGLFSGHSSTCIFCDKNHASVDCWRGPQMTMKEKNGRVKDRKCCYKCLRSG
FT                 HFSSNCKAKLKCIICSRQHVVVMCPEVAQKAQEQEARPVDREEIRGGAPSA
FT                 MTSHECAGDVLLQTLLVRIYNNDKSRYRVARLVFDNGSQGSSVRRDTAEAL
FT                 RLEPVGEVWSRKVLFGGQLTERRRHNRLRVTLSSPDGNTQRDLEVLDEPEI
FT                 CGRLRRIPKGPWLEELAQNRIMLSDMKSQNPEIEVLVGSDYFGQLMTGRVV
FT                 QLACGLTAMESVFGWTLSGKLPAGYHSTAMLHLSSALMSCQSSVSELWSLE
FT                 TLGIMDPVDVKNKEDQELETKKHFLNTVTRTDDGRYSVKLPWIGEAPPIPS
FT                 NRMVAEKRLMAATTKLKAADQYDVYDGIFKQWIEEGIVEEVSGEDLQENGK
FT                 LVHYLPHRPVFKPDSLTTPVRPVFDASCKMSRNPSLNECLQKGPNLLELIP
FT                 SILMRFRERRIGVISDIRKAFQMIAVDPADRDFLRFLWWESPGRKEFKVLR
FT                 HSRVVFGVNCSPFLLAAVIEYHLKSASREYSAVALKLLQSLYVDNCVTSVD
FT                 TMEEYEEFKEKSVHLLEDAKMDLRQWEVSSAEGSSQPLTTVLGLKWNKNED
FT                 ILKVEIPREELPVRISKRVVLSQVQKIYDPLGFLSPATLIPKLLLQKIWKE
FT                 KSSWDAELEEDVKKEFLEWWSEVPDLDNIHIPRHVCASRQERCQIHTFSDA
FT                 SQFAYAAIVFLRVDLGDEVSVQLIQAKSRVAPIKKVTIPRLELLGCTIASR
FT                 LTASVKKALSMEDVPTYFWSDSTTAIAWIRRNDEWGTFVGNRVKEICTLSQ
FT                 PKQWSHVPGGINPADLLSRGCSPSKLVESRWWEGPDWLKGPAENWPAHTEK
FT                 LDENAINFEKKKAFMSSVETVDAWYVKRYSSYMKNIRHIAYLLRFGDKCRK
FT                 RSSENGKLTKEEINRAEVTLVQLVQREEFPMDQKVICGLRVVKNIDGILCV
FT                 KTKLLNRMDSEHFRLPILMPNDHPMVEQLIRWSHAINGHAGVQFLMGSLRE
FT                 SFWIIQARKAIRRVIGKCVTCRRFTAKSGNVTEAALPENRVKTAAVFQITG
FT                 VDLAGPLTLTDGSKTWFVIFTCAVYRAIHLELVTSISTDSFLLALFRFVSR
FT                 RGRPTTIYSDNGTNFVGADNLFRKLDWKRIEAESQVQRIQWLFNPPTASWW
FT                 GGFWERLIRNVKDLLKRVLGHKKLNYDQLLTCLCEVEAVVNGRPLTFVNED
FT                 QDDLIPLTPAMFIQDITVTEFPEVAVLDGSGLRRQYEKLKTLRVQLRNRFR
FT                 KEYLALLVHKGKMKKEHKLEVGDLVLIGADNKKRLDWPMGRIVDFLGKDQA
FT                 RVAKVKTMGGMFLRPIQRLYPLEISSSKELPAVTPEVTKTARLDKESAVQK
FT                 LKETEPGIATRFGRKVRRPVN"
XX
SQ   Sequence 5644 BP; 1619 A; 1051 C; 1543 G; 1431 T; 0 other;
     ttttggtgac ctcgacgtga ttgtcgagag tagtgtggtg ttagtggttc ctgccttaaa        60
     agacggactt gtgccaaggt caaagaggag gaagagattc acgttgctgc cgtattgccc       120
     gtcgttcatc cctttgagaa gaccgagtgg gtggagcaac agagaccaac caggagttaa       180
     tttataagaa gaaccgaatg agcggtttgc tgcggcccta agcgcagcct acctaggttg       240
     gagaattcca gttttaattg ctgttactta cttgaatatt aatatttggt atttgttgga       300
     ttttatattt tcctgagatt tcgtcatgga agatttgaag gctacaagga ctccgtttcg       360
     caggaagttc actcggacac tcaacgaatt gaagatcatt ttggattctg acaatccaga       420
     tgaggaggag gtcgaggtga aaatggaacg gatgaaggtg gcgatagaaa acctgcagtt       480
     atctgatgac aagattcttg ctaagatgct ggcagataag tgttcggaag aagagtacca       540
     agcagagtac gacagcatgg ataagtaccg ggatgagtgg tcggactttt gtgtgaaagt       600
     gcgtcgcgtt tttcacctgc ctggggtcct gtcggaatcc gaagccggat cgtcgtcgca       660
     gtcgactacg ttaaaaaaga atcggactta caagctgccc aaaattgaaa ttaagaagtt       720
     tgcaggcgaa gtgacggaat ggattagttt ttggtcacaa ttcgagaaga tacatttaga       780
     tgaagaactc cacgattgtg acaaatttca gtatcttgtt caatccatgg ttcctggctc       840
     caaagctgca aaacttgttg aaagttggcc acagtctgca aagaattatc ccaaagttat       900
     cgaggctatg caggacaggt ttggcgacaa agtgctactc actgaggtgt atgtaaggaa       960
     gctgcaacaa ttggtcatct ctaatgctgg aaagaagaat gaaaatatct cattggcgag      1020
     tatgtatgat gatctcgagt ccaatttgag aggtctcgag tcccttggag tgacatttaa      1080
     agaaagtgca gcgttcctct atccaatgat tgaatcagga ctgccaattg aattagtgaa      1140
     agtgtggcag agaagtgcct tgtccggata tggagacgaa gaaattaagc cggtggagga      1200
     gagactgact tgtctcatga agttcatccg cgcggaagtt aagggagctc agaggctcac      1260
     attcgtcatc ccatcgcaga aacagccgga aaaggacaag aagaaagata atcatcgcgg      1320
     tgaagggtat cacaagagcg acgtcgcaac agcagctggg ttattcagtg ggcacagttc      1380
     aacttgtatt ttttgtgaca agaatcacgc cagtgttgac tgttggcgag gacctcagat      1440
     gaccatgaaa gagaagaatg gcagagtgaa ggacagaaag tgttgctata agtgcttaag      1500
     gtccggtcat ttttcaagca actgtaaagc aaagttaaag tgcatcattt gttcaagaca      1560
     acatgtggtg gtaatgtgtc cggaagtcgc ccagaaggcc caagagcagg aggcgagacc      1620
     ggtcgacaga gaagaaataa gaggtggtgc cccatcagca atgacaagcc atgaatgtgc      1680
     aggggacgtc ttattacaaa cgctgctagt tcggatctac aacaatgata agagcagata      1740
     ccgtgtggcg cgtcttgtat ttgataacgg gagtcaaggg tcaagtgttc gtcgcgacac      1800
     agcagaagca ttaagattgg agccggtagg ggaagtatgg tcaagaaagg ttctcttcgg      1860
     cggccagtta actgaaagac ggcgacacaa ccgactccgt gtaacattat ccagcccgga      1920
     cggaaatact caacgagatt tggaagtctt ggacgaacca gaaatttgtg gccgacttcg      1980
     cagaatccca aaaggtccgt ggttagaaga attagcacag aaccggataa tgctgagtga      2040
     catgaagtca cagaatccag aaattgaagt cctcgtggga agtgactatt ttgggcaact      2100
     aatgacagga agagttgttc agttggcgtg tgggctgacc gctatggagt cagtcttcgg      2160
     atggaccttg agtggaaaat taccagcggg ttatcattca acagcaatgt tacacttgtc      2220
     cagcgccctt atgtcttgcc agtcgtccgt gtcggaactt tggagtctgg agactttagg      2280
     aattatggat cctgtcgatg taaagaataa agaagatcaa gaattggaaa ctaaaaagca      2340
     tttcttgaat acggtaacaa gaaccgatga tggtcgctac tcggtgaaat tgccctggat      2400
     tggtgaggcg cccccgattc caagtaatag aatggtggcg gagaagcggc tgatggcagc      2460
     aacaacaaaa ttgaaggctg cagatcaata tgatgtctat gatggaattt ttaagcagtg      2520
     gatagaagaa gggatcgtcg aggaggtgag tggcgaggac ttgcaagaaa atggaaaatt      2580
     agtccactac ctgcctcatc gcccggtctt caaaccggac agtttgacca cgcccgtgcg      2640
     cccagttttc gacgcatcgt gcaagatgtc aagaaatcca tcgctaaatg aatgtttgca      2700
     aaaaggcccg aatttattgg agttaattcc atcgatttta atgcggttcc gggaaagaag      2760
     aattggagtc atctcggata ttcgcaaggc tttccagatg atcgcggtgg atcctgcgga      2820
     ccgtgacttt cttcgttttc tctggtggga aagtccaggg agaaaagaat tcaaggtgct      2880
     gaggcattca agagtagtat ttggagtgaa ttgtagcccg tttctacttg cagcagtaat      2940
     agaatatcat ttgaagagtg caagtcgaga atattctgct gtggcgttaa aactactcca      3000
     atctctctac gtcgacaact gtgtgacgtc cgtggatact atggaagaat atgaagaatt      3060
     taaggagaag tcagttcatc ttttggagga tgccaagatg gatcttcgcc agtgggaggt      3120
     cagttctgcg gaaggatcgt cccaaccttt gacaactgtg ctggggctca agtggaataa      3180
     gaatgaagat attttgaagg ttgagattcc acgtgaagag ctgccagtaa gaatttcgaa      3240
     acgtgtggtg ctgtcgcaag tgcagaagat ttatgacccg ttgggatttc tcagccctgc      3300
     gacattgatc ccaaagttat tactgcagaa aatatggaag gagaagtcat cgtgggatgc      3360
     agaactggaa gaagatgtga agaaggagtt cttggaatgg tggagcgagg tccctgattt      3420
     ggacaacatt cacattcctc gacatgtttg tgcatctcgt caggagagat gtcaaatcca      3480
     cacattttcg gatgctagtc agtttgcata cgctgcgatt gtctttcttc gtgtggacct      3540
     gggggacgaa gtatcagtgc aactgattca ggcaaaatca agagttgccc ccatcaagaa      3600
     ggtcacaatc cctcgacttg aattacttgg ttgtacaatt gcaagtcgtt taacagcatc      3660
     agtcaagaaa gccttatcta tggaggatgt gcccacttat ttttggagtg attcgaccac      3720
     tgccatcgca tggattcggc gtaacgacga gtggggtact tttgttggga acagagtcaa      3780
     ggagatttgc accttaagtc agccgaagca gtggtcccat gttccaggtg gaattaaccc      3840
     tgcagatttg ctgtcgcgtg gttgttcgcc gtcgaaatta gtggaatctc gttggtggga      3900
     gggaccagat tggcttaagg gtccggctga aaattggcca gcgcataccg aaaagctgga      3960
     tgaaaatgca atcaattttg aaaagaagaa ggcttttatg agttccgtgg agacagtcga      4020
     tgcatggtat gtgaagcgtt attcaagcta tatgaagaat attcgccaca ttgcctacct      4080
     ccttcgattt ggcgacaaat gcagaaaaag gagcagtgaa aatggaaaac taacgaagga      4140
     ggaaataaat cgtgccgaag tgaccttggt gcagttggtg caacgagaag aatttccaat      4200
     ggatcagaaa gtaatttgtg gactccgtgt ggtcaagaat attgatggaa ttctctgcgt      4260
     gaagaccaag ctgctgaata ggatggattc agaacacttc cggttgccga ttttaatgcc      4320
     aaatgatcat cccatggtgg agcaacttat tagatggagt catgctatca acgggcatgc      4380
     tggggtccag tttcttatgg gatcgctcag agagagtttt tggattattc aagcaaggaa      4440
     agcaattaga agagttattg ggaagtgcgt gacgtgtcgc cgttttactg ccaaatcggg      4500
     aaatgtgacg gaggcagcat tgccagaaaa tcgtgtgaag accgcagcag tttttcaaat      4560
     cacgggagtg gatttagcag gtccgctcac tctgaccgac gggtcgaaga cttggttcgt      4620
     gatttttacg tgtgcagtct accgtgcaat ccatctggag ttggtgacat cgatcagcac      4680
     tgattcgttt ttgttggcgt tgtttcgctt cgtgagtaga cgtggtcgac ccaccacaat      4740
     ctacagcgac aacgggacga actttgtcgg agcggacaat ttgttccgaa aattggattg      4800
     gaagaggatt gaagccgaat cccaagttca aaggattcag tggctgttca acccccctac      4860
     agcaagctgg tggggaggat tttgggagcg gctgatcaga aatgttaaag atttattgaa      4920
     acgtgtcctg ggtcataaga aattgaacta cgatcagctt ctcacatgtc tttgcgaagt      4980
     ggaagctgtc gtgaacggaa gacccttaac ctttgtaaat gaggaccaag acgacctcat      5040
     cccactaaca ccggctatgt ttattcaaga tataactgtg acggaatttc cggaagtagc      5100
     ggttttggat gggagtggtc tgaggaggca gtatgaaaaa ctgaagacgt tgcgagtgca      5160
     actgcgaaat cgtttccgaa aggaatatct tgcacttttg gtccataagg gcaagatgaa      5220
     gaaagagcat aagttggaag ttggagatct tgttctcatc ggtgcggata ataagaagcg      5280
     tttggactgg ccaatgggaa gaattgtgga cttcctcgga aaggatcaag cccgcgtggc      5340
     gaaagttaag acgatgggag gaatgttcct gcgacccatt caacgtcttt atccattgga      5400
     gatctcatca tcgaaggaat tgccagcagt gacaccagag gtcacgaaga ctgccagatt      5460
     ggacaaggag tctgcggtgc aaaagttgaa agaaactgag ccggggatag ctacccgatt      5520
     tggacgtaaa gtgagaagac cagtgaatta aagtgtcaaa agttaaagtt ataattcatg      5580
     tatttgttta taaaattatc tggttttctt ttgttcgttt cctcacgaaa gaaaaggtgg      5640
     agga                                                                   5644
//
ID   BEL-4_FoCa-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-424
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2595-2595 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 424 BP; 118 A; 56 C; 87 G; 163 T; 0 other;
     tgtagaattt agtataaggt ttcataagta atgatatttt gtagttgtat gaaaatgcct        60
     ttatttcttt gtattgtaat tgagtgtctc ataacctcgt gattttgagt tttccggttc       120
     ttcttgggct tgggccacta ttttttctgt tgctgtgtga gtgaataatt gtatggatta       180
     ttcttgggtt tgagttggtc atgagaagtc atgtaaaatt aatgttccaa cgaattaatt       240
     gattctaatt aaataaagtg gtttagtaaa tgtaattggc tttactagtt ccagctttga       300
     ttttaaagta aagaatcgca agaatcataa gtcacgagaa gagttttaaa gtcatacacc       360
     gcattccact cggcaatttt taagtgagga cttatctacg ggtagtaggt ctgctccctc       420
     aaca                                                                    424
//
ID   BEL-4_LH-I  repbase;    DNA;    INV; 5822 BP.
XX
AC   ADOQ01002781;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_LH_;
KW   BEL-4_LH-LTR; BEL-4_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5822
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002781; Positions    2408    8229.
XX
CC   Positions [4693-5178] - Integrase core
CC   'TATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..3706
FT                 /product="BEL-4_LH-I_2p"
FT                 /translation="METDLDLVALKKRRKIIKGSCTRIKTYVDTIATITPS
FT                 VIAQLKERRCKLNDYWSEYGDIQSQIELLDENETNDRALFEESYYALSAKI
FT                 REFLNPITHIRATTASPSTSRASNQMNTQINIRLPKLNLPTFSGKYHEWFP
FT                 FFDSFNSVIHLNASISSVQKLQYLKASLTGDASNVISSLEISDLNYEVAWN
FT                 LLRERYDNKRVIVRTHIKTIMELPSMSKENSTELRQIADGAVRHIQALQAL
FT                 KRPTAHWDDLLVYILSSKLDATTLREWQSSLVGTDPPTFKQFSDFITYRCQ
FT                 MLEATGSAVDALSKGGNKRFQANAKRQTACVATINPKCNFCNGEHAIYYCK
FT                 NFLALSVPQRIIEVRNRRICINCLRSPSHSANKCPSRGCKLCKIKHNTLLH
FT                 QTESTTETINKETNIHDDSVATKPSTTLVACASNNNSAEHVMLSTAVVNAF
FT                 HKDGSAVSCRALLDCGSQANFISRDLVKALGLSTHPLNVSISDINRSASSS
FT                 TQATRVKLQSRLNTYTIEIECIITDQITGNLPTFTIRRDVYKIPRNLNLAD
FT                 PQFNVSSRIDILIGVEKFWDLLCVGQIEHSPEHPTLQKTHFGWILAGRLCN
FT                 SVGLVRKVHSMHATVTNSQLHHQLSRFWQIEDVNTACKYTAEELNCEKHFL
FT                 ENVSQNHEGRYIVKLPIKQTTMVDLGNSREITIKRLQALERRLSRDPNLKT
FT                 QYTNFISEYLNLGHMKRVDIALDEDTPVYYLPHHCVFKGTRQASKIRVVFD
FT                 ASCKSSSGVSLNDALRVGPTVQQDLMSIVMRFRTFVYVLVADIVKMYRQVL
FT                 VHPSQTHLQKILWRDQPSSDIETYELITLTYGTSSASYLATRCLNHLAELH
FT                 ALDYPIGSVRVHRDFYVDDLLTGANTIEETETARDEIIKILSLGSFQLSKW
FT                 ASNCLQLLGSINGREDPLIPISDGNESYVLGLRWDQTNDTFHFPYGSKANH
FT                 GTITKRVILSEISKLFDPLGLLGPVIVVAKLILQDLWKSDAHWDESVPQAI
FT                 YTRWSTLKSQLLELNQLKQCQDKLSLEAVSVTCRSTGSVTPVRTHTGLACT
FT                 FAQGLNPTSIDLSYCVQSQGLHL"
FT   CDS           4153..5178
FT                 /product="BEL-4_LH-I_1p"
FT                 /translation="MLSRHSDLNKICRIVAYCLRIFKKRPRPPTLFISHEE
FT                 SDAALNQICKMIQQQHFSSKYKALVKHDVISSTSKILSLTPFLDETGLLRV
FT                 GGRLRNSDLTFNSRHPILLPANHELTKKIIMREHVRNMHAGTQATMAAIRQ
FT                 QFWPLSLRSTTRKIILHCVKCFRVKPAFSEATMGSLPTGRVTVSRPFSHCG
FT                 VDYAGPIILRESKRRNARNHKAYVAIFVCFAVKAVHIELVSDLTSDAFIAA
FT                 LKRFISRRGKPSHLYSDNGTNFVGAHNQLKEFFDSLSKDETQEEVKHFLRT
FT                 QHTSWNFIPPNAPHFGGLWEAAVKSAKYHMNRIIGKAHLILKSYKQYCVR"
XX
SQ   Sequence 5822 BP; 1659 A; 1383 C; 1289 G; 1491 T; 0 other;
     aaaaattggt ccttcgagcc ggatggttac ggccatccgt cttcttcggc aagggtgatt        60
     gagatctcgc ggtcaagcga gctatttctt gacactcgac acacaaagag acttcctgga       120
     ctcacttcaa gcttgcacat tgggcggtgg gctatccggg agcctgcata acctcaacgc       180
     acgtggacag cagaaggatt ctttccccct ctctacataa ggatcgtccg aaccagtgga       240
     cgcttctgac ccacgatcga ggattcagca acgaggatcg acgtcagcat cgagaacgtc       300
     gacctagcaa ggaactattc tccattcgta tcggtaaggg caaccgtggt agtgccaatt       360
     cgagtcccgc atactgcgaa attgtgcgcg ttgcgcacaa ttaatattat tattaatatt       420
     atttaccgcg tgatcgcgcg ccttgcatta ctaaggacaa tttaagatgg aaaccgattt       480
     agatctcgtc gcgctcaaaa aacgacgtaa gatcatcaag ggttcatgca cgcgtattaa       540
     gacatacgtg gacacaatcg ctactataac cccgtccgtc atagctcagc tcaaggaacg       600
     cagatgtaaa ttgaatgact attggtcgga atatggtgat attcaatctc aaatcgaatt       660
     actcgatgaa aatgagacga atgatcgcgc tctgtttgag gaatcgtact atgcactctc       720
     agcgaaaatt cgcgaatttc tcaatcccat cacgcacata cgcgcgacta ccgcttctcc       780
     gtctacgtcg cgcgcttcaa atcagatgaa cacacaaata aacattcgtt tacccaagct       840
     aaacttgccg acattttccg ggaaatatca tgaatggttc ccatttttcg attcttttaa       900
     ttcagtcata catttaaatg cgtcaattag cagcgtacaa aagctgcaat acctaaaggc       960
     ttctttgacc ggtgatgcaa gtaacgtgat aagttcacta gaaatttcgg atttaaatta      1020
     tgaagttgca tggaaccttt taagagaacg gtatgacaat aagcgagtca tcgtacgtac      1080
     ccatattaaa acaattatgg aactgccatc gatgtctaag gaaaactcga ctgagctacg      1140
     acaaatcgca gacggggctg ttaggcacat acaagctctt caagctctta agcgtcccac      1200
     cgcgcattgg gacgacttac tcgtgtacat tttgagctca aagttggacg caaccacatt      1260
     gcgagaatgg cagtcttcgt tagtaggcac cgacccgccc acgtttaagc aatttagcga      1320
     ctttattact tatcgatgcc aaatgcttga agctacaggc agcgccgtcg atgctttatc      1380
     caaggggggt aacaagcgat tccaagctaa tgcgaagcgt caaacagcgt gcgttgcaac      1440
     aattaatcct aaatgtaact tttgcaatgg cgaacatgct atatactatt gtaaaaattt      1500
     tctagcatta tccgttccgc aacgaattat agaagtacgc aatcgaagga tttgcatcaa      1560
     ttgtctgcgt tcaccttctc actcggctaa caaatgccct tcaagaggat gcaagctatg      1620
     caagatcaaa cacaatacgt tgctgcatca aacggagagc accacggaga caatcaacaa      1680
     ggagactaac attcatgacg attcggttgc tacgaaaccc tcaacaacgc tagtagcctg      1740
     cgcttccaac aataattctg cagaacacgt gatgctctcc acggccgtgg ttaacgcgtt      1800
     ccacaaggac ggatctgcag tatcctgtcg agcattactg gattgcggct cgcaggctaa      1860
     ttttatttcg cgagacttag tgaaggcctt gggattgtct acgcacccgc tgaacgtgtc      1920
     aatctctgat atcaacaggt cagcttcgag ctcaacgcaa gcaaccaggg tgaaactaca      1980
     atcacgccta aacacataca caatcgagat cgaatgcatc atcaccgatc agattacggg      2040
     caatcttccg acgttcacaa taaggcgtga cgtttacaaa attcctcgca acttgaacct      2100
     tgccgatcca caatttaacg tctcgtcgag aattgacatt ctcatcggcg tcgaaaaatt      2160
     ctgggatcta ttatgtgtgg gacaaattga gcattcgcca gagcacccca ctcttcagaa      2220
     gacgcacttt ggatggatat tggcggggcg cctgtgcaat tcggtaggat tggttcgaaa      2280
     ggttcattca atgcacgcaa ccgttaccaa cagccagtta catcatcaat tgtctcgctt      2340
     ctggcaaata gaagacgtta acaccgcgtg taaatacact gctgaggaac tcaattgtga      2400
     gaagcatttt ttggaaaacg tctctcaaaa ccatgagggg agatatatcg ttaagctgcc      2460
     aatcaaacaa accacgatgg ttgatttagg aaattcaaga gaaattacaa tcaaacgcct      2520
     acaggctttg gaaaggcgcc tttctcgcga cccaaacctc aaaacacaat acaccaattt      2580
     catctcagaa tacctaaatt tggggcatat gaaacgcgtg gacatagctc tggacgagga      2640
     tacaccagtg tattacttgc cacatcactg cgtatttaaa ggcacaagac aagcttctaa      2700
     aatccgcgtc gtcttcgatg cgtcttgcaa atccagctct ggcgtttccc taaatgacgc      2760
     tctcagggtc ggaccgactg tacaacaaga tttaatgtcc attgtcatgc gattccgcac      2820
     cttcgtctac gttctagtcg ctgacatagt gaaaatgtac cgacaagtct tggtacaccc      2880
     ttcccaaaca cacctgcaga aaatattgtg gcgtgatcaa ccatcgtcgg atatcgaaac      2940
     ttacgaacta attacgctca cttacgggac gtcttcagca tcttatttgg caactcgatg      3000
     cctcaatcat ttggctgagt tacacgcatt ggattatccg attggatctg tccgcgtgca      3060
     tcgagatttt tatgttgacg atcttcttac gggagccaat accattgaag aaacggagac      3120
     cgcgcgggac gaaataataa agatattgag cctggggtcc ttccagctca gcaaatgggc      3180
     ctcaaattgt ttgcaactac tgggatcaat aaacggtcga gaagatccac taattccaat      3240
     aagtgacggg aatgaatctt atgtcctcgg attgcgatgg gatcaaacta acgacacatt      3300
     ccattttccg tacggatcca aagcaaatca cggaacgata accaagcgtg tcatactgtc      3360
     cgagatatcc aagttgtttg accccttggg gcttctagga ccagtcatag tcgtcgcgaa      3420
     actgattctt caggatcttt ggaaatcaga tgcacattgg gatgagtccg ttccgcaagc      3480
     aatatacacc cggtggtcaa cgctcaaatc acaattgttg gagttaaatc agttaaaaca      3540
     gtgccaagac aaattaagtt tggaagcagt cagcgtgacg tgcagatcca cgggttctgt      3600
     gacgccagtc agaacgcata cggggcttgc gtgtacattc gctcaaggct taaacccgac      3660
     gagtatcgat ctgagctatt gtgttcaaag tcaaggattg cacctttgaa ggctgtttcg      3720
     ttaccacgct tggagttgtg cgcggcgcta ctcttagctc gtttagttga aaaaatccaa      3780
     tcagcaataa acacaacaga tgttcaaacc tatttatggt cggattcgac aataacttta      3840
     aattggatat catcgccatc tcgcaagtgg tctgtctttg tggccaatcg agtgggcgag      3900
     attcaaagat tgactaaggc acaacagtgg catcacatat caaccaccct caattctgcc      3960
     gacttgctat cgagaggcct caacccacga gaactaatca acaatgattc ctggtggcac      4020
     ggaccgcgat tcctatgcta cagcgaagat cgctggccca gctgcgaggt tccttgcctt      4080
     ggagacaacg caccagagct ctgaaaagtc tgcgttgctg tcgctgtctt tgaaattaat      4140
     gtcatagaag agatgttgtc taggcattct gacttaaaca aaatttgtag aatcgttgca      4200
     tactgcttaa ggatattcaa gaaacgtcca agaccgccca cgttattcat ctctcatgaa      4260
     gagtccgacg cagcactgaa tcagatatgc aaaatgatac aacagcaaca tttctcttcc      4320
     aaatacaagg cactagtaaa acatgacgtc atttcctcta ctagcaagat tctctcttta      4380
     acgccctttc tcgacgagac tggactactg agagtgggag gcagattgag gaattcggat      4440
     ttaactttca actcgcgtca tccgatactt ctcccggcca atcacgagtt aacgaaaaag      4500
     attataatgc gagaacacgt gcgaaacatg cacgccggaa cacaggccac catggccgcc      4560
     atcagacaac agttctggcc cctgtcctta aggtcaacta cgcgaaaaat catcctacat      4620
     tgcgtgaaat gtttcagggt taagccggca ttttccgaag ccacgatggg atctttaccc      4680
     accggtcgcg ttacagtgtc tcggccattc tcgcactgtg gggtagatta cgcgggtccg      4740
     ataattttgc gcgagagcaa aagacgaaac gcacgaaatc acaaggcata cgttgccata      4800
     ttcgtttgct ttgcggtcaa ggctgtacac atagagttgg tgagcgattt gacgtccgat      4860
     gcctttatag cggcactcaa gcgcttcatt tctcgcagag gaaagccttc tcacttgtac      4920
     tcggacaacg gaactaattt tgttggcgcg cataatcagc ttaaggagtt tttcgacagc      4980
     ttgagcaagg atgaaacaca ggaggaggtg aagcattttt tgcgtacaca acacacatct      5040
     tggaacttta tacctcccaa tgctccccat tttggaggtt tatgggaggc ggcagtcaaa      5100
     tccgcaaaat accatatgaa tcggatcatc ggtaaagctc atttaatttt gaagagctac      5160
     aaacaatact gtgtgagata gaggctgtgt taaactcgcg ccctatcact gcgttaagct      5220
     cggatccaaa tgatctgtca tttctaagcc cgggtcattt tttaattggc actaccatga      5280
     acggtttccc ttgttacgac ttacgcgaca tcaatgagaa ccgtcttgtg cgatggcagc      5340
     gggtagaaca gttaagacaa catttctggc agcgatggag tggcgaatat cttcattcct      5400
     tgcagactcg atcaaaatgg aaggccgaca agggtgttca gttggaaacc ggtcagctag      5460
     tgctcataag gcagcaggat ttggctccat tacactggtt gttaggacga gtgcatgaaa      5520
     tacatgcggg ggccgacggt gtcgtgagaa gcgccaccgt gagaacagcc aagggttttc      5580
     ttaccaggcc gctgaccaag ctggctattc tcccggtgag acatctgacg tcagatgctg      5640
     ataccttata ttattagtgt gatatcttat ttgcgtaaga gaccttcttt gatttgttca      5700
     tttcaatgta taacctcgga tcaatgttcg cgtctaccaa agattttagt tataagactg      5760
     aagacgtgca atatttttat tttatttaat tttgaaggca gatccttcaa aggagggtgg      5820
     cg                                                                     5822
//
ID   BEL-4_LH-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   ADOQ01002781;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_LH_;
KW   BEL-4_LH-I; BEL-4_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-300
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002781; Positions    2108    2407.
XX
SQ   Sequence 300 BP; 80 A; 65 C; 64 G; 91 T; 0 other;
     tgtttagtat tataatgata ttagtgcgtt catttcattt tcttatttta atattcccgc        60
     gtatccgcgc ggcgccttgc ggcagacggc gaagttccgt tcgcgctcac tttttatcac       120
     aagtcgtagt cgatttcatg tgtcaagaca acgtgtattc tgcgtgcgtt gtaaaactga       180
     agaaaataaa ttatttaaac aagagagagc agcagtcttt tctcgaccat accgcttgcg       240
     acgcagcatt tccgtgagca cgtgtggaag cgtgaatcgt tcacgcaaca atacaaaaca       300
//
ID   BEL-4_MoPha-I repbase;    DNA;    INV; 5804 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5804
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1131-1131 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           459..5633
FT                 /product="BEL-4_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTDDINALKRMRATVKASCTRIKNYVDTITEVTTAVS
FT                 AALEVRQVKLDQYWTEYNKIQTQIESLVEDQDRESFECAFYDLAAKIKVLA
FT                 GGADNGGHRNVANATPTANVQEESATAVQLPKLNLLQFSGSYEEWFAFHDN
FT                 FQSVIHNNNSLSDVQKFQYLKASLTGNAAEVISSIELSNQNYDIAWDLLKE
FT                 RYNNVKVLVQAHIQAIFELPTMVKENANDLRQIADGTARHIRALKALKRPA
FT                 DTWDDLIIYILSSKLNSGTARQWRTSLKEREIPTLKQFMAFLHHRCEVLEA
FT                 PVKPVGGTSTQGRINIKRQGTHAATVKSQCNYCKEDHLIYYCADFLKLTIP
FT                 ERISKARKLKLCLNCLRSTNHSAPTCKSGHCKFCSERHNSLLHLKAKETNN
FT                 SQSSNTALEPSQVEAITNSVTTCTSTSCSRITLLSTAVVDVLDRYGCGQRC
FT                 RTLLDNGSQANLISSSFVKRLQLPTQTTDIVVSGINGTISKSSHIVQLTFQ
FT                 SRATNYRTNIKCIVTDKITERLPSRSIDKSKLQVPSHIRLADPNFHVSDDV
FT                 DLLLGVEVFWELVCPNQIKISPGHPILQQTKLGWILAGGFTTNSKNSHVNT
FT                 LHLSITNEELSNQLSQFWRIEEPPHLSDPFTIEEMECEHHFTQNVTRNPEG
FT                 RIVVKLPIKDNKVNSISDTRAIALRRFYKIERKLDFRPILKRDYAQFMHEY
FT                 VQLGHMTPIETEEPANTELPVFYLPHHCVIKPDSSSTKLRVVFDGSCKGPT
FT                 GISLNNALRVGPVIQQDLISILLRFRTLPFVITADIIKMYRQVLIDPSQTQ
FT                 LQRIFWRDNSSDPLQIFELKTVTYGTSSASYLATRALKYLADLYKNDYPLA
FT                 SQCMLRDFYVDDVLTGGTSIDECIRLRDELIQLLGKGGFHLAKWASNNCRI
FT                 LSGLHDTMESNLSLDKTLNCKILGTLWNPSTDSLRYNAQDTGNHKSLTKRE
FT                 LLSEIAKVFDPLGLIGPVIIIPKLLMQELWQQNLQWDEPVFPSILSKWSQF
FT                 KSELVSLNTLSISRCVKFSNDTSHLQLHGFADASQRAYGACIYLRSYTSKG
FT                 EFRTELLCSKARVAPLKATSLPRLELCAAMLLAQLVHKVRSSVELANVKLF
FT                 LWSDSTITLNWIASASRKWSVFVANRVGEIQRLTEITDWHHIQSTLNPADV
FT                 LSRGLNSKELITCDLWWSGPPFLKHRESKWPVTETTPKIQESDMPELKGAT
FT                 TLSSTISLLPISSLLNKFSNIDKICRIVAYCLRVIKFRLRGSYVSKSITHQ
FT                 EASAALMIICRAVQHSTFSQEIDCLRNNQPLKSSSHLLSLSPFLDDNNLIR
FT                 VGGRLRNSELSYDAKHPILLPKHHILTELIIKNTHIRNLHAGLQGTMAATR
FT                 QLFWPLGIRSITRKIIKQCVICFKCNPSNSVAKMGNLPAPRVKPSRPFTTC
FT                 GIDYAGPLTIRDGKRRNARHMKSYVCIFVCFATKAIHIELVSDLTSDAFLA
FT                 ALRRFVSRRGKPSSIFSDNGTTFVGASRQLSEIYEFLRKQEVKDSIHNYAQ
FT                 DSKISWTFIPPNAPHFGGIWEAGVKSIKFHLYRIVGTVALTFEELQTTLCE
FT                 IEAILNSRPLIPLSTDPNDLSFISPGHFLIGDTLNSLPCHSLENVNMNRLT
FT                 RWQLTDQLRQHFWRRWSQDYLHQLQQRHKWPTSKGDQLKVGQLALIKQPGL
FT                 APLQWLRGRVEKIHPGEDGIARSATLRTNKGTLVRPLSRLAILPTEECSNI
FT                 LSKTL"
XX
SQ   Sequence 5804 BP; 1708 A; 1382 C; 1202 G; 1512 T; 0 other;
     tctttggtcc ttcgagccgg atccgtccat acggcggatt ctacggcaga cgctgcgttc        60
     ctaagaagca cgtgagcagc cattagagtt gcaacgatcg agaaactgat agaaggatca       120
     acaatattcc ttcgcatttc ggcctctgca ccataagacg tcatcgacgg catttgtgaa       180
     gccaactcct tcgcctcccg gttcctatgc actagaaatt atcgacgaca tcgtcgagta       240
     caggaacgaa agagacgaag tgatccagca cgagacgatc tccatttcaa ggacgaaaca       300
     agacaacagg acacgattcc cagcggcagc agttgaggcc tcgcagccac atcgacggcg       360
     cagacgaagc tacacaaggt aggaagacac cgtgtgtcgt cgccaattaa ccttacttct       420
     cacatcctaa atttgcttga tttcgttgtt tatcgacaat gacggacgac attaacgctc       480
     taaaacgaat gcgtgcgact gtaaaagcgt catgcacgcg aataaaaaac tatgttgata       540
     caattaccga ggtaacgacg gctgtatcgg ccgctttgga ggttaggcaa gtcaaactcg       600
     atcagtattg gacagagtat aacaaaattc aaacgcaaat agagtccctc gtggaagatc       660
     aagatcgtga atcattcgag tgtgcatttt atgatttagc tgcaaaaata aaggtattgg       720
     cgggcggcgc cgacaacggt ggtcatagaa atgttgcgaa tgcaaccccc acggctaatg       780
     tacaagaaga atcggcaacg gccgttcaat taccaaaact aaacttgctt caattttcag       840
     gtagctatga agagtggttt gcattccacg acaactttca atcagtcata cataacaata       900
     attccttgag cgacgttcaa aaatttcaat accttaaggc atcattgaca ggcaatgctg       960
     cagaggttat aagttcaata gaattgtcca accaaaacta cgacatagcg tgggatctcc      1020
     tcaaggaacg ctacaataac gttaaagtct tagttcaagc gcacatccag gctatttttg      1080
     aattgcccac aatggtgaaa gagaacgcga acgatctgcg tcaaatagca gatggtacgg      1140
     ctcgacatat tcgtgcattg aaagctctca agcgtccagc ggacacgtgg gacgacttga      1200
     ttatttacat attaagttcc aagttgaact caggaacagc gcgccaatgg cgaacgtcgc      1260
     tcaaggaaag ggaaataccc acactgaaac aatttatggc cttcttgcat cacagatgtg      1320
     aagtgcttga agcacctgtc aagccggttg gaggcacgtc gactcaaggt cgcataaata      1380
     ttaaaaggca gggcacgcat gctgccacag ttaagtcgca gtgtaattat tgcaaggaag      1440
     atcacttaat ctattactgt gcggattttc tcaaattaac aattcctgag cgcatatcca      1500
     aggcacgtaa gttaaaatta tgtctcaatt gcttgcgttc gacaaatcat tctgccccaa      1560
     catgcaaatc gggccattgc aagttctgca gtgagcggca caactcgttg ctccatttaa      1620
     aggcaaaaga aaccaacaat tctcaatctt caaatacggc tttagagccg tctcaggtcg      1680
     aggctatcac taattctgtt actacttgca cgtcaacttc gtgtagcagg atcacgttat      1740
     tatccaccgc agtagtggac gtcttggatc gatacggatg cgggcagaga tgcagaacgt      1800
     tactagataa cggatcccaa gcaaatctta tatcaagctc ctttgtaaaa agattacaac      1860
     ttcccactca gacaacagac atagtcgtat cgggaattaa tggtacaatt agcaagtcga      1920
     gtcatatcgt acaattgacg tttcaatcgc gtgccaccaa ttatcgcaca aatatcaaat      1980
     gtattgtcac agataaaata acagaaaggc tcccatctcg atcaatagac aaatccaaac      2040
     tacaagtacc cagccacata aggttagctg atcctaactt tcatgtttca gatgatgttg      2100
     atttgttact aggagtcgaa gtattctggg aattagtctg cccgaatcaa attaagatat      2160
     cacccggcca cccaatactt caacaaacta aactcgggtg gatcctggca ggtggattca      2220
     ccactaacag taaaaactcc catgtaaaca cgcttcattt gtccattaca aacgaagaat      2280
     tgtcaaatca actcagccag ttctggcgca ttgaggaacc tccgcatcta tccgatcctt      2340
     ttaccataga ggaaatggaa tgcgaacatc attttactca gaacgtaacg cgcaatcctg      2400
     aaggacgaat agtcgtgaag ctacctatca aggacaataa agtaaattcg ataagcgata      2460
     ctagagccat tgctttacgt cgtttctaca aaatagaaag gaagcttgat tttcggccaa      2520
     tattgaagcg tgattacgcc caatttatgc acgagtacgt gcaattaggt cacatgacac      2580
     ccatcgaaac cgaggaaccc gcgaacactg aattgccggt tttctattta ccgcaccatt      2640
     gcgtgattaa gcctgacagc agtagcacca aattgagggt cgtgttcgat ggttcatgca      2700
     aaggtcccac aggaatctca ctcaacaatg ccctgagagt cgggcctgta atccaacagg      2760
     atcttatctc tattctgttg cgcttccgca ctcttccgtt tgttatcaca gcggacataa      2820
     taaaaatgta ccgccaggtg ctcatcgatc catctcaaac gcaattgcag cgaatattct      2880
     ggcgtgataa ctcttctgat ccacttcaga ttttcgaatt aaaaaccgtg acgtacggaa      2940
     cctcttccgc atcgtatctg gccacgaggg cactcaaata tctagctgat ttgtacaaaa      3000
     atgattatcc gttagcttcc caatgcatgt tacgcgattt ttacgtcgat gacgtgctaa      3060
     cgggtggcac gtcaattgac gaatgcataa gattaaggga cgagctcatt caacttcttg      3120
     ggaaaggagg attccacctc gcaaagtggg cctccaataa ctgccgcatt ctttctgggc      3180
     tgcatgacac aatggaatct aacttgtctc ttgacaaaac gctcaactgc aagatactcg      3240
     gaacactctg gaatccttcg actgattcat tgcggtataa tgctcaagat actggcaatc      3300
     ataaatctct tactaaacgt gagttgctat cagagatagc caaggtgttt gatcctcttg      3360
     ggttgattgg ccctgtaata atcattccaa aattgctgat gcaggagcta tggcaacaaa      3420
     atctacagtg ggacgagccc gttttcccat ctattctgtc gaaatggagt caattcaagt      3480
     cagaattagt cagtctaaat actttaagca taagtcgttg cgtaaaattc agtaacgaca      3540
     cctcgcatct ccaattgcat ggcttcgctg acgccagcca acgagcatat ggcgcgtgca      3600
     tctatcttcg ctcgtacaca tcaaagggcg aatttcgaac agaactattg tgctccaagg      3660
     ctcgtgttgc gcctctcaaa gcaacttctc ttccacgcct agaattgtgc gcagccatgc      3720
     tcctcgccca attagtccac aaggtaaggt cgtctgtcga gctggcaaac gtcaagcttt      3780
     tcctatggtc agattcgacc atcacattaa actggatcgc atccgcctcc agaaaatggt      3840
     cagtatttgt ggccaaccgc gtcggagaaa tccagcgatt gactgagatt actgactggc      3900
     atcacataca atcaacacta aatcccgcag atgtgttgtc ccgcggccta aattctaagg      3960
     aactaataac atgcgatttg tggtggtccg gccctccctt tctcaagcac agggaatcaa      4020
     agtggcctgt cactgagacc acgccgaaaa ttcaggaatc cgacatgcct gagctaaaag      4080
     gagcaaccac gctttcttcc actataagcc tattaccaat cagttcgttg ttgaataaat      4140
     tttctaatat cgacaaaata tgtcgcatag tagcctattg tctaagggtc attaagttcc      4200
     gtttacgggg ctcgtatgtt agcaaatcaa ttacgcatca agaagcatcc gctgcattga      4260
     tgatcatttg ccgcgcagtt cagcacagta cattctcaca agaaattgat tgtttaagga      4320
     ataaccaacc attaaaatca tcaagtcatt tactatctct atcgcctttc ctagatgata      4380
     acaatttaat aagggtaggt gggagactaa ggaattccga actttcctac gatgcgaagc      4440
     atccgatttt gttgcccaag catcatattt taactgagct tataataaaa aacacacaca      4500
     tacgtaattt acacgctggc ctccaaggta ccatggccgc gactcgtcaa ttgttctggc      4560
     ctttgggcat acgctctatt acacgaaaaa taatcaaaca atgcgtcatc tgcttcaaat      4620
     gcaatccatc aaactccgta gctaaaatgg gaaatctacc cgctcccaga gttaagccat      4680
     ctaggccatt tactacctgt ggtattgact atgcgggacc gctgaccata cgagatggta      4740
     aacgacgaaa cgctcgtcat atgaaatcat acgtctgcat ctttgtttgc ttcgcgacca      4800
     aggctatcca cattgaactt gtgagtgact tgacctccga cgcctttctt gcggccttga      4860
     ggcgatttgt atctcgaagg ggcaagccca gttctatttt ttcggataac ggcaccacct      4920
     ttgttggtgc gtctcgacaa ttatcagaaa tctatgaatt tttacgaaaa caagaagtaa      4980
     aggatagtat ccataattac gcgcaggact ctaaaatatc gtggaccttt atacctccca      5040
     acgcccccca cttcggcgga atttgggagg caggagtaaa atcgatcaag tttcacttat      5100
     atcgaatagt agggaccgtt gccttaacct ttgaggaatt acaaacgact ttatgcgaaa      5160
     tcgaggcaat cctcaactcc cgtcctttga ttcctttaag cactgatcca aatgatctca      5220
     gttttatttc tcctggtcat ttccttattg gcgacacact taacagtctt ccgtgccaca      5280
     gcttggagaa tgtcaacatg aatagactca ctagatggca gctcactgac caactccgac      5340
     agcatttttg gaggcgctgg agccaagact atctgcacca attacagcaa cggcacaaat      5400
     ggcccacctc aaagggcgat cagctgaagg tgggacaact tgccctgata aaacaacccg      5460
     gacttgctcc acttcaatgg ctgaggggtc gagtagagaa gatccatcca ggagaggatg      5520
     gcatagcccg ctcagctact ctacgaacca acaagggaac actcgttcga ccattgtcgc      5580
     gattggctat cttgccaaca gaagaatgta gcaatatttt gtctaagacg ctgtaaagcc      5640
     ttgcttattc ttaattatta tttttatgtc aagttatggc agttcatttt gccttatttt      5700
     gtattttagt tatttccact attgtataat tactgagtta cgaactaact ttgcgtttcg      5760
     tattgttttt cattttttga aagagctcct ttcaaggcgg gcgg                       5804
//
ID   BEL-4_MoPha-LTR repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-335
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1150-1150 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 335 BP; 88 A; 89 C; 63 G; 95 T; 0 other;
     tgtacgataa attcatttct tcgcgcagtt attatcggcc gcagtatgac aggttcgttc        60
     tctgtcactc aatggttatc gactgcatcc atcgatcggt cgctggctcg cgcatgttcg       120
     tgggacttcg gtctctctcg tcgtttaccc ggcttcttcg gcgcgcgcat ctctctctag       180
     aaagctctct tatatatcca cgtcgcaact cgacacgtgt aggaaacgct cattttaata       240
     aaccaccata agaaaattac gaacaagttt ttgggtctta atcaaacacg ccctacatcg       300
     aaccagcaaa caaaagttat caattaagca aaaca                                  335
//
ID   BEL-4_NVi-I repbase;    DNA;    INV; 5704 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: internal portion -
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5704
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1340-1340 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           453..1976
FT                 /product="BEL-4_NVi-I_1p"
FT                 /translation="WRTATSCISVGTTPRNLISSGSTEKCTAFPICDESSP
FT                 RTRYTSASDDSSGSTGAQKRDIILGSRTQRGVARSRVASYNSSQRQATRHF
FT                 SPFPNDDYGDGLQAEQLDDDDQAEQLDGQENSEESALNLSLNENAGIESEN
FT                 ESENDRYGEICDDFGDRFHSTECNSRLVRNHVAIQEQSSSNPANEIAEAIK
FT                 LTLSTVRESSFYSSNENSKLAHRMSSKSLPTFTGDPIEWSRFKQVYEVSSE
FT                 LGAYNDKENAARLYDALRDDARKAVKMLYVSGSSAEEIMKVLEMRFGNKKV
FT                 ILLKVIREIKNLPKMGSSKSDLINFASDLRGALGAIKVLDSGYLCSTELED
FT                 EIIKKLPDSVISNYIRFAAHDDNQKSKLEKITEFLDKEAEMMIRAGVVTDQ
FT                 SHEFNRKKSDHSSKDSRDSHNTYRERSVCTTNQNISELPTRQNNQRCAHCG
FT                 RKNHSTEFCHDFQKAPNYQRWKVARSNRLCFNCLREGHSRLKCTQPSCKRC
FT                 GRRITQMKRNS*"
FT   CDS           join(2856..3587,3591..4055,3947..4822,4689..5684)
FT                 /product="BEL-4_NVi-I_2p"
FT                 /translation="FHYAIKDDLRDMFLKINIQEADRDAQRFLWRGCDRTI
FT                 EPDKYVMSSVLFGAKSSPFTALFIKNKNASLCSSTYPAAAKSIIENSYIDD
FT                 FLESCETREEASSRVQQVVEINKHANWEMHGWASNDASVLSNSNINSNDKQ
FT                 PINFETKDNIEEILGLRWVNSTDELIFKINIEKISQDLRTGAKKPTKRVLL
FT                 KIIMSIFDPLGFLTPFTIEAKLILQGVWNSKIGWDECIQDTEFDQWKRWLQ
FT                 KLDIKLLHIPRSYRSKNCQVKSAELHIFCDASSKAYAAVAYWRICLKDDSY
FT                 HVSLIMAKSRVAPMKETTVTIPRLELQAAVLAIRVANIIAKEHDFQISRRV
FT                 FWSDSKTVLHWINKEPREFKIFVANQLAKILRLPNGGGFRRPKTPLMMGLE
FT                 SRQTLDFCSESISENSSTSEWRWIPSSENPADDGTRIAPDALAKDSRWFLG
FT                 PEFLKKSEESWPVEQVSNFDKGDSERREKPVFCAFTITKRVYKLFDFTKYL
FT                 SQFSSWLRLIYPIIRFYEAINKMRKLDINLVEIRDKAEKMCLEWSQSVAFS
FT                 VEINALKNSLPISKKSKIAGLNPFLSKDGILCSNSRLINLEECEISTQPII
FT                 LEGSDKITRLLVKHYHESCFHGSHETVINELRQKYWIVGLRHLLRSIVSNC
FT                 AICKWFRSNPSTPKGSSPSSSTRLSTASLFSLRYRLFRAFECAIAQFVNGF
FT                 AVIHLLQKAALPLARLGYRLRPFSHCGIDYFGPLNVKVGYRRREKRWGVLF
FT                 TCMSTRAVHIELAQTLSTSSAILALKRFTGRRGTPFVIYSDNGTNFIGINN
FT                 EIKKALKDLDRKKLNEFAAKKQIVWKFNPPTASHMGGAWERLIRSVKNALN
FT                 VVFKDQAYCEELLQTILIEIEHCINSRPLTHVSIDPRDKEALTPNHFLLGA
FT                 SSGEIRLGRCDKQIECSRKQWETAQYMADKFWDRWLREYLPTLIPRKKWQE
FT                 NESPLIVGDLVLVLDNNLPRNQWKKGVVTRIFPGSDGQVRVAEVRTSSGIF
FT                 LRPSRKLIRFTVVQNS*"
XX
SQ   Sequence 5704 BP; 1820 A; 1105 C; 1261 G; 1518 T; 0 other;
     ttttggcgcc cgaacaggga cctgaggtta cagccttttt tacgcgcaga aggaaaaatg        60
     ggcaagagga cgacaaccag caagaaaact gcaccaccca ataagaaaag ggctccagag       120
     attttatctc gatatgaagc tgaggacgat ccggatgcgt tagaggttct tccaccttct       180
     agcgcggact ctggcgaaga gcagggacat gtagacagtg gcggcctcga cggcgcagaa       240
     gcaccgcctt cgaattcatc atcggggaaa aaccggtcaa cttcagcagc ggcccagaaa       300
     cgcgttttac ctcctgtgac ggcgttgcaa aagcgccaac cagcttcaac agcagtggca       360
     gcacagaagc gtgctccgct tcctaaacat acgacagcag cagctcaagg acgtacgtca       420
     attcaatcag cgacggtgac gcgggcgctt agtggcgcac cgcaacctcc tgcatcagtg       480
     tcgggacgac gccacgtaac ctcatcagca gcggaagtac ggaaaagtgc accgctttcc       540
     caatctgcga cgagagtagc ccaaggacgc gctacacttc ggccagcgac gacagcagcg       600
     gcagcacggg cgcgcaaaag cgcgatatca tcctcggcag ccgtacccag cgcggagtcg       660
     cgagatcgcg cgtcgcatcc tacaacagca gccaacgaca agccacccgt catttttctc       720
     ctttcccgaa cgacgactac ggcgatggtc tccaagcaga gcagctcgac gatgacgacc       780
     aagctgagca gctcgacggt caagagaatt cagaagaatc tgcgttaaat ttaagtctga       840
     atgagaatgc tggtattgaa agtgagaatg aaagcgagaa tgatcggtac ggcgagattt       900
     gcgatgattt cggtgatcgt tttcacagca ctgagtgcaa ttcaaggtta gtccgaaatc       960
     atgtagcgat tcaagaacaa tcaagcagca accccgcaaa tgaaatagcc gaagcgatca      1020
     aattaacgtt aagcactgtt cgcgagtcaa gtttttatag ttctaatgaa aattcaaaac      1080
     tagcacacag aatgtcatca aagtctttac caacatttac gggagatcca atagagtggt      1140
     cgcggttcaa acaagtttac gaagtttcct ccgaactcgg agcatataat gacaaagaaa      1200
     acgctgctcg attgtatgat gcgttgcgtg atgatgctag aaaggcagta aaaatgcttt      1260
     acgtatctgg tagcagcgcg gaagaaataa tgaaagtgct tgagatgcgt tttggtaaca      1320
     aaaaagtaat actgcttaaa gtaattagag aaatcaaaaa tttaccaaaa atgggctcaa      1380
     gcaagagcga tttaattaat ttcgcttcag atctgcgagg cgctttaggg gcgattaaag      1440
     tgttagatag cggttatttg tgcagtactg agcttgaaga cgaaattata aaaaagctac      1500
     ctgactcggt gatcagtaat tacatccgct ttgctgctca tgatgacaat caaaaatcaa      1560
     agttagaaaa aattactgag tttttagata aagaagctga aatgatgatt agagcaggtg      1620
     tagtaactga tcaatcgcac gagtttaatc gcaaaaaatc tgatcactcg tcaaaggatt      1680
     ctcgagattc acataatact tatcgagaaa gatcggtgtg taccactaat caaaatatat      1740
     ctgagcttcc tacgagacaa aataatcagc gatgtgctca ttgcggccgt aaaaatcaca      1800
     gtactgagtt ttgtcatgat tttcaaaaag ctccgaacta tcagcggtgg aaagtagcta      1860
     gatcaaaccg tctctgtttt aattgtttaa gagaaggaca ttctcgatta aaatgcactc      1920
     agccatcgtg caaacgttgt ggccgacgta ttactcaaat gaaacggaac agttaaaacc      1980
     gactgatcaa gaatctcctt ctcaaagctc tgataaacct gctgatattt cgactttcac      2040
     gcaatcaaca aatagtacca gctgactagc atcgcagacg tttttaaaac taattccggt      2100
     tagaataaat ggaacgtcaa gctttaaaat tgtgtatgct cttttagatg aaggttcgac      2160
     tgcgacgcta atcaactcac gaatagtaaa agaaattgga gtgcgaagta cgaaaataga      2220
     tatagctata aaaggtgttg gaagcgaaat tgagagcatg ttttcaagcg aaaatgtaga      2280
     cattgaggtt tctagtccgt tctcaaattt ttcattaaca aatgttttag tcgttaataa      2340
     tctagcgctt cccaaacaat gtgtgccttc tggattaatc gaactttgcg caaagcttat      2400
     gggaattcgt gtaagcgctt accatcaagc tcccgatttg ttgatcggcc aagatcacag      2460
     tagtttaata attactcgtg aatttcgtgt tattcaaaaa gctctttacg tatcaagatg      2520
     ccttttgggt tggtgcatac acggtaattt tttaaataac gaagtctctg ttcagattga      2580
     aacttgaccg tgacgaacaa tatgcgaaat tgtattactg tgaaatggaa agacttatca      2640
     aaaatggttt tgctaaaaaa tgtgcgaata aaccgtcagg gagtcgaatt tggtacctgc      2700
     ctcacttcgg cgtatcaaac attaataaac cggggaaagt aaggttggtt ttcgatgccg      2760
     cggtcgcgac ttcatctgtg agttttaata aacttttact ttccggtcct gatcttttaa      2820
     aatcactttt aggcgtgttg atgcgatttc gttagtttca ctacgcgatt aaagacgatt      2880
     tgcgcgacat gttcttaaaa attaatatac aagaagccga ccgcgatgct caaagatttt      2940
     tatggcgagg atgcgatagg actattgaac ctgacaaata cgtaatgtct tccgtattgt      3000
     ttggagcaaa atcgtctccg ttcactgcgc tattcataaa aaataaaaac gcttctctgt      3060
     gttcatcaac atatcctgca gctgcaaaga gcattattga gaatagttat atcgacgatt      3120
     ttttagaaag ctgcgaaaca agagaggaag cgtcttcgcg ggttcagcaa gtagtcgaaa      3180
     ttaataaaca tgcgaattgg gagatgcacg gttgggcaag caatgatgcg tctgttctga      3240
     gcaattcgaa cataaacagc aatgataaac agcccataaa ttttgagaca aaagacaata      3300
     tcgaagaaat tttaggatta agatgggtaa actcaacgga cgaattaata tttaaaataa      3360
     atatcgaaaa aatcagtcaa gacctacgta caggagccaa aaaaccaacg aaacgagttt      3420
     tgttaaaaat tatcatgtcg atctttgatc ctcttggttt tttgacacct tttaccattg      3480
     aagccaaatt aatattgcag ggtgtttgga attcaaaaat aggttgggac gagtgcatac      3540
     aagacacaga atttgatcaa tggaaacggt ggttacagaa gttagattaa ataaaattat      3600
     tgcacatacc gcgctcttat cgatctaaga attgtcaagt aaaatcggcc gagttacata      3660
     tattttgcga tgctagctct aaagcgtatg ctgctgttgc atattggcgt atttgtttaa      3720
     aagacgattc gtatcatgtt tcgttaatca tggctaaaag tcgagtcgcg ccaatgaaag      3780
     aaactactgt cactattccc cgtctagaat tacaagcggc agtgcttgca atcagagtcg      3840
     ccaatattat tgcgaaagaa catgactttc aaatctcgcg tcgggttttt tggtctgatt      3900
     caaagaccgt gttacattgg atcaataaag aacctcgcga atttaagatt tttgtagcga      3960
     atcaattagc gaaaattctt cgacttccga atggcggtgg attccgtcgt ccgaaaaccc      4020
     cgctgatgat gggactagaa tcgcgccaga cgctttagct aaagacagca ggtggtttct      4080
     cggtcctgaa ttcttaaaaa aatcggaaga aagctggcct gtcgaacaag tgtctaattt      4140
     cgacaaaggg gattcagagc gccgtgaaaa acccgttttt tgcgctttca cgataactaa      4200
     acgagtatat aaactttttg attttacaaa atatttatcg caattctcct catggttacg      4260
     acttatttac ccgattatta gattctacga agcaattaat aaaatgagaa agttagatat      4320
     taatcttgtt gaaattcgtg ataaagcgga aaagatgtgt ttggagtgga gtcaatcagt      4380
     ggccttttct gttgaaatta atgctttaaa aaattcattg ccaatttcga agaagagtaa      4440
     gattgctggc ctgaaccctt ttttaagcaa agacggtata ttatgttcca acagtcgtct      4500
     tataaattta gaagaatgcg aaatctcaac tcaaccaata attttagagg gaagcgataa      4560
     aatcacgcgt ctgttagtaa aacactatca cgaaagctgt tttcacggta gccatgagac      4620
     tgtaataaat gaattaaggc aaaaatattg gattgttgga ttacggcatt tattgcggag      4680
     catagtaagc aattgcgcaa tttgtaaatg gtttcgcagt aatccatcta ctccaaaagg      4740
     cagctctccc tctagctcga ctaggctatc gactgcgtcc cttttctcac tgcggtatcg      4800
     attatttcgg gcctttgaat gttaaagttg gatatagaag acgcgaaaaa cgctggggcg      4860
     tattgtttac gtgcatgtca actagagccg tacacatcga actcgcacag acgctcagta      4920
     caagttcagc gattttagct ttaaaacgtt ttacaggcag aaggggaact ccattcgtta      4980
     tatacagcga taacggtaca aattttattg gaataaataa tgaaataaag aaagccctta      5040
     aggatctcga tcgtaaaaag ctcaatgaat ttgcggctaa aaaacaaata gtttggaaat      5100
     tcaatccacc aacggcatcg catatgggag gcgcttggga acgattaatt cgttcggtca      5160
     aaaatgcttt gaacgtagtt tttaaggatc aagcgtattg cgaagagctt ttacagacaa      5220
     tattgattga aatagagcat tgtattaatt caagaccttt gacacatgtc tcaatagatc      5280
     cacgggataa agaagcatta actcctaatc atttcttgct cggcgcgtcg tcaggtgaaa      5340
     tcagattagg tagatgcgac aaacagatag aatgttcgcg aaaacaatgg gagactgcac      5400
     agtatatggc ggataaattt tgggacagat ggctgcgaga gtaccttcca acactgattc      5460
     cgagaaaaaa atggcaagag aatgaatcgc ccttgattgt tggagatttg gttttagttc      5520
     tggataataa tttacctcgg aatcagtgga aaaaaggtgt tgttacgcga atattccctg      5580
     gatctgacgg acaagtacgc gtcgctgaag tacgaacgtc cagcggtata tttttaagac      5640
     cgagtagaaa gttaattcgt tttacagtag tgcaaaactc ctgagttttg caccaggggg      5700
     agaa                                                                   5704
//
ID   BEL-4_NVi-LTR repbase;    DNA;    INV; 497 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia vitripennis: long terminal
DE   repeat - consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-497
RA   Bao W. and Jurka J.;
RT   "BEL type LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1341-1341 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 497 BP; 148 A; 77 C; 120 G; 152 T; 0 other;
     tgttaccgtt tcaatgttaa taaatattgt attcacttaa ttgtttatta tgtctattcg        60
     tttatttaaa aagatcaagt gttctgaacg aatggtgata gttgatacca tttcgtaggc       120
     tgcgtgcacg gcgttcgtga aggatcgtcc ggggccgctt tcctccttcg gtaaggcaac       180
     acgattatcg tgcaaaaaat tctttgaaaa ttaaaggagg gtacggggtg aaaaagcgta       240
     gaggcttttc acggacgtga gccattggaa cacttggaag ttcgaggtcg gataaagatt       300
     gaaaatcggg ttgcttagca atacaagaaa aggtttgggt aaaaacaatt gagtgagcgc       360
     gtgaaaatgt aacgagcaga ttttggtgaa ctttcgaaga gtgcagatgt gtagtcagat       420
     aattttgtgc aataaaaaaa cttaaaacct tcttgatttg tgttttcctc tgtgcgcgtt       480
     tctaaacacc agctaca                                                      497
//
ID   BEL-4_PPo-I repbase;    DNA;    INV; 4713 BP.
XX
AC   scaffold769_cov557;
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_PPo_;
KW   BEL-4_PPo-LTR; BEL-4_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-4713
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2960-2960 (2015).
XX
DR   Genome; scaffold769_cov557; Positions  405966  410678.
XX
CC   'CATAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1318..2412
FT                 /product="BEL-4_PPo-I_1p"
FT                 /note="DUF1759 (Gag)."
FT                 /translation="MSKMADIDSLINKRTSIRGRLTKFKNYLAQVGPNVEE
FT                 SQFNELQLKIQKVTELFQNYDLLQDKIDELCPDTIDDEIDERDATESQFTQ
FT                 LLSKAKTILSQYSQNNIQASSTQSVSLRPHEVSFKLPTIVISKFNGNYSDW
FT                 LEFRDTYKSLIHNNSQLLPIHKFHYLNSYLTGEAARLLTNLEVSSETYSEA
FT                 WDLLCARFDNKKHLIYNHLNALFNLESMSRENDKSLRSLIDNVNKDLRALS
FT                 SLGEPTDKWDTIIIHMVCMKLDPITKRAWEEVRNTFEDMPKLNQLTKFLQD
FT                 RAGILETCNNKTNATSTQQIPSKNVHAYKTLTCTTNYNVTPVNTTTQHKSQ
FT                 YACTYCNQDHIIYNCPAFLXMW"
FT   CDS           2405..4711
FT                 /product="BEL-4_PPo-I_2p"
FT                 /note="retropepsin and integrase."
FT                 /translation="XCGNCLKRGHNVRECRSSSCRQCRKRHNTLLHFPSQP
FT                 AANITVQTAVTKADDTPVIANIASSQPTTQVLLSTAVIEVVNPETNVRQRA
FT                 RCLLDSGSQATFISKALKERLGLKTIATKSVPIMGMSDTPCGYISERSVVR
FT                 LESTIGKFNVTQACAILPQLTGNIPHKSIKLEYLKLPSNIQLADPTFNSSN
FT                 PIDILIGADLFWQIIGNEQKSLGPNLPVLRNSQLGWLISGPIYTNTHIKQV
FT                 DCNLSTSKTSTKHNSSEADLPNPKILPTIQLDDDPIMKIENYSQLNRLTRT
FT                 LAYVLRFVHNIKNKNAKLTGPLSVSELNMSISHLSKQSQKQSFEKEYDALR
FT                 KGQQIATKSKISSLSPFLDKDGVMRVGGRLNKSNYSQDKKHPVILDGKHKL
FT                 TKLIFEREHLRQLHGGPQLILYSIRQTIWPIGGRQLARSTVRACVVCRRHK
FT                 GQTLTPIMGNLPFERITPASPFQTIGMDFAGPFNIINKKGRGARVSKCYLC
FT                 LFICFRFKCVHLEAVSDLSKEAFILALRRLISRRGIPQEIFCDNGRNFVAA
FT                 SKEVGQFIKKNADNFIDFATSKKITFKFQPPYAPHFSGLSEAGIKSAKHLV
FT                 KRVMGNSHLTFEELSTLFAQVEAIMNSRPLSPLSSTPDDYLPLSPGHFLIG
FT                 RPLTSIASTETPQLEGSCRTRYELLERIRQQFWKRWQKDYITELQQRKRWK
FT                 QNKTSLAVGDLVLIQEDNTRPLDWRLGRVAQLFPGDDGVPRVADIKTTRGT
FT                 IRRALTRLCPLLDEPGPE"
XX
SQ   Sequence 4713 BP; 1517 A; 1133 C; 807 G; 1254 T; 2 other;
     taaagtggtg accgtgataa aacatccaat ccacaatagc cacgaagtgg catctgtgac        60
     gaaatcgagt gaagaagtcc gagtaaatat ccacgtgcag caactaccac gcggtgttaa       120
     ggaagaaaga aaaggtccgg ccggctgacg caatccctcc gtgccagact cctattttct       180
     cagctaagtt ccttatctat ttcaaatatc cttcccattt gttgtagcct acaacctgtg       240
     caatatttcg ctacaacttt tggtcgatca ataacaattt atattcaatc ttctgtcgat       300
     tcacacgtat ctatgtcaca aaacttaact cccaaggtcg agctatattc acaatttcaa       360
     tttcccttgg ttgaactaat atatttcccc ctacatgtgt gtacatagtc tattaacaaa       420
     ttcaattcat atgtaccacg ccatctaatg tttcactcaa ctcccaaggt cgagctatat       480
     ctacaatttc aatttccctt ggtgaactaa tatatttacc ttacatgtgt gtacatacta       540
     tatcaaaata ttaatttcct atgtaccacg ccagctaata ttgcatttat ttcccaaggt       600
     cgatctatct ccttaattgt ttacaatttc ccttggtcga actaacgtgt attttttgca       660
     tacaaattac cacacatctc ataatatctg ttctccatat ataccacgcc agctaggctt       720
     gcatttaata ttctatacat atatcccaag gttgatctat ctccataatt gtttacaatt       780
     tcccttggtc gaacaaacgt ttatttgctt tcaaattatc acacatttca aattacatat       840
     tatactccat atacatatac cacgccagct aggcttgcat acaatatttc caaacatatt       900
     tcccaaggtt gatctatctc ctaattgttt acaatctccc ttggtcgaac aatcgtgtta       960
     aagcgtctta aattaccacg cagcctactt atctatctaa tctatcctat tttctatgta      1020
     tcaggctatt taacttgcat tattcccgtg catattatat accacgcttt tggccgacaa      1080
     tttcagcacg tggtcgagta cgcacattgc gcccgccccg agnccggcca cgagccttgc      1140
     cacagcgtga catttctact agttcgccga cgccgatgga gtgccggtaa cttgtcagcc      1200
     tgaattacga ggagcattga gtaactatat tccaattatt tatcacgcat cttaaattct      1260
     tagttaaatt tagtataacg caacaaccgc attttacaat ttttgtctag tctaattatg      1320
     tctaaaatgg cggatatcga tagcttaata aacaaacgta ccagtatcag aggtagacta      1380
     actaaattca aaaactatct tgcacaagta gggcctaatg tcgaggaatc tcaatttaac      1440
     gaattacaac ttaagataca aaaggttacc gaattattcc aaaattacga tttgctgcaa      1500
     gataaaatcg atgagctttg ccctgatacg atcgacgatg aaatcgatga gagagacgcc      1560
     acagagtcac aatttactca attactatcg aaagcaaaaa caatactctc acaatattcc      1620
     caaaataata tccaggcgtc ttcaacgcaa agcgtctctc ttcgacctca cgaagttagt      1680
     tttaaattgc ctactattgt tatatctaaa tttaacggca actattcaga ttggttagag      1740
     tttagggata catacaaatc actcatacac aacaattcgc aacttttacc aatccacaaa      1800
     tttcattatt taaattcata tcttacgggc gaggctgcca ggttactgac gaatttagag      1860
     gtctcatcag agacatatag cgaagcttgg gacctcctat gcgcccgctt tgacaacaag      1920
     aagcatctaa tctataatca tctaaacgca cttttcaatc tagagtccat gagccgggaa      1980
     aatgacaagt cattacgctc cttgatagat aacgtcaata aggacctaag agccttatct      2040
     agccttggtg agcccacaga caagtgggac actattatta tacatatggt ctgcatgaag      2100
     ctagacccta ttacgaaacg agcttgggaa gaagtaagaa acacttttga ggatatgcct      2160
     aaacttaatc aattaacaaa gttcctacaa gacagagcag gtatcctgga aacgtgtaac      2220
     aacaagacaa atgcaactag cacgcagcaa attccaagta aaaacgtaca cgcctacaaa      2280
     acattaacat gcacaacaaa ctacaatgta acgccagtca atactacaac acaacataaa      2340
     tcacaatacg catgtacata ttgcaatcaa gatcacatca tatataattg ccctgctttc      2400
     ctagntatgt ggtaactgtt tgaagagagg acacaatgtc agggaatgcc gcagctcatc      2460
     ttgccgacaa tgccgcaagc gacacaatac actgctacat tttccatcac agcccgccgc      2520
     caatatcacg gtgcagactg ctgttactaa ggctgacgac actccagtca tagcaaacat      2580
     cgcgtcgtct cagccaacaa cgcaagtcct tctatcgacg gcagttatcg aagtagtcaa      2640
     tccggagacc aatgtaaggc agagagcacg ctgtctctta gactcaggta gccaagctac      2700
     atttatcagc aaagcattga aggagagact ggggttaaaa acaatagcaa caaagtcggt      2760
     accaatcatg ggcatgtcag atacaccctg tggctacatc tcagagagga gtgtagttcg      2820
     tctagaatca acaattggaa aattcaatgt tactcaagcc tgcgcaattt taccccagct      2880
     cactgggaac ataccacaca agtccatcaa gctcgaatac ctcaagttac catcaaatat      2940
     acaattggca gatcctacat tcaacagctc taacccaata gatattttaa tcggagcaga      3000
     tttattctgg caaatcatcg ggaacgaaca aaagagcctt ggaccgaact tacctgtact      3060
     aagaaattcg caattaggtt ggttaatctc agggccgatt tatacaaaca cccatatcaa      3120
     acaagtagac tgcaatctat caacaagtaa aacaagcacc aaacacaatt catctgaagc      3180
     agacttacca aatcctaaga ttctacctac aatacaactc gacgatgatc caatcatgaa      3240
     gatagaaaac tattcacaac tcaaccgact aacgcgcaca ttagcatatg ttctacgatt      3300
     tgttcacaat ataaaaaaca agaatgcgaa gttaacaggc cctctctcag ttagcgaact      3360
     aaacatgtca atttcacatc tatctaaaca atcccaaaag caatctttcg agaaggaata      3420
     cgatgcgcta cggaaaggac aacaaatagc aacaaagagt aaaatctcgt ctctaagccc      3480
     ctttctagac aaagatggag tcatgagagt gggtggtaga ttgaacaaat ccaactacag      3540
     ccaagacaag aaacatcctg taattctaga tggaaaacac aagcttacca agttaatttt      3600
     cgaaagggaa catttacgtc aactgcatgg tggtccccag cttatactgt actcaattcg      3660
     tcagacaatc tggccaatcg gtggccgaca attagctaga agtacagtcc gcgcttgcgt      3720
     cgtatgccgt cgtcataaag gccaaacgct cacaccaatt atgggaaact taccatttga      3780
     acgcatcact ccagcatccc cgtttcaaac tataggaatg gactttgccg gtcccttcaa      3840
     tatcattaac aaaaaaggtc gcggagctag ggtttcaaaa tgctatctct gtcttttcat      3900
     ttgttttaga tttaaatgcg tccacttaga ggcagttagc gatctatcga aggaagcctt      3960
     tattctagct ttacgacgac tcatttcccg aagagggata ccgcaggaaa ttttctgcga      4020
     caatggtcgc aactttgttg cggcatcaaa agaagtcggc caatttatta agaaaaatgc      4080
     ggacaatttt atagattttg ctacatctaa gaaaataaca ttcaaatttc aacctccata      4140
     tgctcctcat ttttctggtt tgtcagaagc cggcataaaa tcggctaagc atttagtcaa      4200
     acgcgttatg ggcaactcac accttacttt tgaagagttg tccaccttat ttgcacaggt      4260
     tgaggcgata atgaatagtc gtcctctatc tccattatcc tcaactcctg atgactacct      4320
     acctttatct ccaggtcact tcctcatcgg ccggccgctg acatcaattg catctaccga      4380
     aacaccacaa ctagaaggtt cctgccggac gcgctacgaa ttactcgaaa ggattcgtca      4440
     acaattttgg aaacgctggc agaaagacta catcactgaa ttacaacaac gcaaaaggtg      4500
     gaaacaaaac aaaacaagct tggcagtcgg cgatcttgtc ctcatacaag aagacaacac      4560
     ccgaccacta gattggcgcc tcggacgcgt cgcccaacta tttcctggcg acgacggcgt      4620
     tccacgtgtc gcagacatca agacaacaag agggactatt cgtcgagctc tcacccggct      4680
     gtgccccctg ctggacgaac cgggccccga gca                                   4713
//
ID   BEL-4_SI-I  repbase;    DNA;    INV; 5508 BP.
XX
AC   AEAQ01012976;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SI_;
KW   BEL-4_SI-LTR; BEL-4_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5508
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01012976; Positions   12406    6899.
XX
CC   Positions [4389-4853] - Integrase core
CC   'CTTCT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1487..2542
FT                 /product="BEL-4_SI-I_1p"
FT                 /translation="MMNLASLHASTPELMISAIIYIQNSNHQQIKCRAFLD
FT                 TCATANFITVSMANRLKLPISTQSLSINAINGTCTESKGIVRITIKSLHNE
FT                 FTKNLTCLTIPSITDLVPSETFPRNAVKIPRNIKLADPEFHLPRSVDLLIG
FT                 SGATLSLFAVGQISLSKDGHDLYLQKTRLGWVIAGNTTSQIPSNVTCHLTR
FT                 LEELISKLWITEEITTDKLQSPEEIDCETYYLRTVSRNKSGRYVVRLPFRK
FT                 NNTRLGDSRILALKRLSALERKLNANNTLKTEYTRVITEYINLNHMSEIKN
FT                 PDDHGYYMPHHAVIKESSSTTKVRVVFDASAKTNNGLSLNDTLMVGPTIQN
FT                 KLFSHLIRF"
FT   CDS           3156..4853
FT                 /product="BEL-4_SI-I_2p"
FT                 /translation="MQDVWRCGLQWDESVPQNIYTEWLKFVKQWEAMGRVS
FT                 FPQNLLIKNYQNVQIHGFCDASNIGYGACIYVRSTGEHGDVTVRLLCAKSR
FT                 VAPLKITTIPRLELCGAIILAQLYQEIKDVFVFNVTKVVFWSDSTIVLHWL
FT                 NISPHLLKTYIVNRVTIIQEITGSYEWRHVRTANNPMDALSRGQLPYDFLQ
FT                 NNAWSTGPTWLIKDASQWPNEFKRLTEIPELKKNTCLTVVHKDYGIFDKYS
FT                 SYFKLLRIIAWCLRFCSNNKNTDNLCTDEINNAESRVLKLLQDSQFSDVIR
FT                 ELKKNIAYKGKFANLNPFLDEIGLIRVGGRIQRSNLSFAQKHPILLSNRHR
FT                 ITDNIIRELHEKHLHTGIQTTLYTLRQRFWISDGRNQVRRIVRTCTRCSRF
FT                 NANAIKYKLGNLPAAWVRATTPFAHTGVDFCGPFFIKEQKFRNRNEIKVYV
FT                 CVFICMAIKAIHLEIVSDLTSDGFFAALRRFNARRGIPEHIYSDNGTNFVG
FT                 ANNKLKEIYALINSEEHKTLVNQFANQHRIKWHFIPPLAPHFGGMWESTVK
FT                 SFKHHFKRVIGDSILRMKN"
XX
SQ   Sequence 5508 BP; 1894 A; 1105 C; 1020 G; 1489 T; 0 other;
     tttttttggt gcctcctgtg aggtttcacg gtttactcga ggacaaggaa accttcgacg        60
     agtccgcgac tcaagacagt ggttctcaaa cgacgtccca cggattcaat ccgctgtctc       120
     taggcgttgt cgcgacgact tcacgtgagt ggagggaaaa cagaatacaa attctcatta       180
     tacgaaatcg atcgaagtaa gtcgtttgat tattctttaa ttattcaacc atggccgaca       240
     aaatcaaatt aatcattcaa aaacggacgt ctttaaaatt acaactcact aacttgagta       300
     atattctcga caaaggtagt gtagatcgtt ccttaataaa actaagaatg aatcgtatca       360
     ccgaactata tcacgcgttc gaaggatata acgacgagct cgcgttgtta gatccgagtg       420
     atgcgcatca atccaaattc gaaaacatac aagaacgtta ttatttaatc gcgagtaaag       480
     tagaaaatat tttacatccg cctgatacaa gagaggagac agaatctaac gtgtcgatta       540
     acggaactcg tagtgacagc acggagacaa taattaaaaa tcgacgaatc aaattaccgg       600
     aagcttcttt accgactttc gatggaatgt acgagaattg gctgtcgttt aagaatgcat       660
     ttgctaacat gatcggctcc cgaaccgatc tatccgatat tgataaatta cattatttaa       720
     aatcagcttt gatcggagac gcagctagca aaattcaaat attcgcgatt gacgggatca       780
     attatactaa agcgtgggaa ttacttgagc gcgcctacga agtcaaacgg attttaatat       840
     cgcgacatta ttcgatgatt ctcaatttgc ccgcgataga caaggaatct actagcgggt       900
     tgtacaaact tgtggatgac gcacaacaac atgtcgcgtc actgagtact ctaggaatta       960
     acgtcgagcc gcaattaatc gtacatattt tagagactaa actacctaaa aatacgttat      1020
     aaaaatggga gacgaaaaaa acaagtttcc gaaagttgag caaatgtacg aattcctgta      1080
     caaatccgcg gtctgtgcgt cgaaatgcga aagaacaaag gcgatagaag gagataataa      1140
     agacgagccc gcgataaaga agaaaaaatt gtctcactcg aatcgtgcac tcttattgaa      1200
     taagacacgc agttgtttaa tgtgtaaaaa taaacgacat ccgttatata cgtgcgagaa      1260
     attcaagcaa ttgtccgtac aaaagcgtat tgatacggtg aaaaacgcga agatttgcta      1320
     caactgctta cgttcacata aagatttccc ttgtaaattc tcgaactgca tcatatgtca      1380
     aaaacgtcat aatacacgat tgcacgttga caattacggc gcctcaaata aatccaaccc      1440
     ttctaaagca gcatcgaacg ggacagattg actagccgat actcgaatga tgaatcttgc      1500
     gtctctacac gcctccacac cagagttaat gattagtgcg ataatttaca ttcaaaatag      1560
     taatcatcaa caaattaaat gccgagcgtt cttagacact tgtgccactg caaattttat      1620
     tacagtatcc atggcgaatc gtttaaaatt accgatatcg acacaatcat tgtcaattaa      1680
     tgcaattaat ggcacatgca ctgaatcgaa aggcatagta cgcatcacga taaaatcttt      1740
     acacaatgaa tttacaaaaa atctaacatg tttaacaatt ccgtctatta ccgatttagt      1800
     tccatccgaa acattccctc gaaacgcagt caaaataccg cgaaacatca aactcgcgga      1860
     tccggaattc cacttacctc gctcggtcga tctattaata ggttccggag cgacactttc      1920
     tttattcgcg gttggtcaga taagcttgtc taaagacgga cacgatttat atttgcaaaa      1980
     gacacgtcta ggatgggtga tcgccggaaa caccacatca caaattccgt caaatgttac      2040
     gtgccattta acgcgtttag aagaattgat atccaaactt tggattactg aagagattac      2100
     gacagacaaa ttacaatctc cggaagaaat cgactgtgaa acatattatt taagaacagt      2160
     ctcgcgaaac aaaagcggtc gatacgtggt tcgattaccg tttcgaaaaa ataatacccg      2220
     tctcggcgac tcgcgtattt tggcactcaa acgtttatcg gcactcgaac gcaaacttaa      2280
     cgcgaacaat actttaaaaa ctgaatacac cagagtaata actgaatata tcaatttaaa      2340
     tcatatgtcc gaaataaaaa atcccgacga tcatgggtac tatatgcctc atcacgctgt      2400
     aattaaagaa tcgagtagta ctacgaaggt acgagttgtg tttgatgcgt cggcaaaaac      2460
     aaataacggc ttatctctca acgatacatt aatggtaggt ccaactatac aaaataaact      2520
     attttcgcat ttaattcgtt tttgatctta caaatacgtt ttaacagcag acatcgaaaa      2580
     gatgtataga cagattctcg tacacgataa ggatcgacgt tatcaacgca tattatggcg      2640
     cgaaaacggt gaaataaaaa cattacaatt aaatacgctt actttcggga tttcttcatc      2700
     gcaatccgtt tctcgcaatc cgcaccatca aaaaattagc agacaatgaa cgatcttcat      2760
     atcctcgagc agccaaagta attgagtcac atctatatgt agatgattta ttaaccggca      2820
     ctgagacgat aaatgaggct cggacgttgc gaaatgaaat aataacatta ttagctctcg      2880
     gcggctttag tattagacaa tgggcatcta acgataaacg cgtagtcaat gatttaccga      2940
     ttggcgcact acacgagaat tttgcattaa atacagattg cgcttttaaa aacattaggc      3000
     gtaatgtgga atgcacgcga tgataaaata tattacgcga cgaaattaat cggaaataca      3060
     acaaaaatta cgaagagaac tatattatca gagattgcca aaatatttga ccccttagga      3120
     ttgctggccc ggttatttta tatattaaga aaataatgca agacgtgtgg cgatgtggtc      3180
     tacaatggga cgagtccgta ccgcaaaaca tatatacaga atggttaaaa ttcgtaaaac      3240
     aatgggaagc aatgggccga gtttctttcc ctcaaaattt attaatcaag aattatcaaa      3300
     acgtacaaat acatggattt tgcgacgcga gcaatatagg ttacggtgca tgtatatacg      3360
     tgcgctcaac gggagagcac ggtgatgtaa ccgttagatt gttatgcgcc aaatcgcgag      3420
     tagcgccatt gaagataact accatcccac gacttgaatt atgcggtgca ataatattag      3480
     cacaattata ccaagaaata aaggacgtgt tcgtttttaa cgtcaccaaa gttgtttttt      3540
     ggagtgactc gactatagta ttacattggt tgaacatatc gccacacttg ttaaaaacat      3600
     acatagtgaa tcgcgtcacc atcattcaag aaatcaccgg ttcatatgaa tggcgacacg      3660
     tcagaaccgc aaacaatccc atggacgcgt tatcaagagg ccagttgcct tacgattttt      3720
     tgcaaaacaa cgcatggtcc acaggaccta cttggcttat taaagacgcg tcgcaatggc      3780
     ctaatgagtt taaacgttta acagaaatac ccgaattaaa gaaaaacacc tgtttaacag      3840
     tcgtacataa ggattacggc atttttgata aatactcatc atattttaaa ttgctcagaa      3900
     taatcgcttg gtgtctcaga ttttgctcaa acaacaaaaa tacggataat ttatgtaccg      3960
     atgaaattaa taatgcagaa tcacgagtgt taaaattgct ccaagacagt caattctcgg      4020
     acgtaattcg agaattaaaa aagaacatcg catataaggg taaattcgca aatttaaatc      4080
     ccttccttga tgaaatcgga cttattcgtg tcggtggacg tatccaacga tccaatctct      4140
     catttgcgca gaaacacccg attcttctct cgaatcgcca tcgtattaca gataacatca      4200
     ttcgcgaact tcatgaaaaa catcttcata caggtattca aacaaccttg tatacattga      4260
     gacaacgttt ttggatatct gacggccgaa atcaagtgag aaggatcgtt cgcacatgca      4320
     cacgatgctc ccgattcaat gccaatgcga ttaaatataa attaggcaat ctcccggctg      4380
     cttgggtgcg tgcgacaaca ccctttgctc ataccggtgt agatttctgc ggtccatttt      4440
     ttatcaagga acaaaaattt cgtaatcgta atgaaatcaa agtatacgta tgcgtattta      4500
     tttgtatggc tataaaagcc atacatctcg aaatagtaag tgatctaaca tcggacggat      4560
     tttttgcggc tttacgccga tttaacgcca gacgcggtat tcccgaacat atttactcag      4620
     acaacggtac caactttgta ggtgcaaata acaaattaaa ggaaatatat gcgttaataa      4680
     actcggaaga acataaaaca ctcgtaaacc aatttgcaaa tcaacaccgt attaagtggc      4740
     attttatacc gccactcgct ccccattttg gtggaatgtg ggaatcaact gtaaagtcat      4800
     ttaaacacca cttcaaacgc gtgataggtg actctatttt acgtatgaag aattagaaat      4860
     gttcacaacc gaagtcgagg gcattttaaa ttctagagca accacgtcca tatcggcaga      4920
     tccaaacgac ttacttgttt taacccccgc tcattaccta attggcaaac ctattacttc      4980
     tttgccggaa agcaatttat taagtgttcc agaaaatcgt ttatccatct ggaaacatat      5040
     atcaaaagtc cgacaagact tctgggcaag atggagtatg gaatacttaa atgaactcca      5100
     aacacgaaat aaatggaaaa aagacaaatc aaagcttaac atcggttttg tcatacttat      5160
     caaagacaaa aatattccat gcacttaatg ggcgttaggc agagttacac acgtacaccc      5220
     tggagaagat ggaattgtac gagtcgcaac tataaaaaca tcttcaggag aaaaaaaaat      5280
     agctgtaaaa tcattatgtc tgttgcctat agaaaccgat taagcacgtg gtacagtatg      5340
     aaatattgat cactaaaata ttcatataca tcattagatg taaatattta tccattcata      5400
     tcacatgata cattacatac gcatatacat gtaatatata catgtatagc gtatatgtac      5460
     atgcgagtat atattattga tccgtatttc ctctcaacgg ggggagta                   5508
//
ID   BEL-4_SI-LTR repbase;    DNA;    INV; 747 BP.
XX
AC   AEAQ01012976;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SI_;
KW   BEL-4_SI-I; BEL-4_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-747
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01012976; Positions    6898    6152.
XX
SQ   Sequence 747 BP; 247 A; 157 C; 135 G; 208 T; 0 other;
     tgttatgtac gtgacacatt aaaagagtgt catgcacgac acattcacac acaaatatat        60
     ataaacatat ataaatgcgt acgttataat tgtaaatgaa atatacattc acacacatac       120
     acacatacat gtatgtcgga aaacggacga cgggtgaact tagataaaag agaattctcg       180
     ggcaattcga catatttggc acttcgagat ttcctgttac taagcgaatt tatgtatcgg       240
     tattccgcgt taccatgcac acgcttgttt attaaataag tccaatttgt tatcggtgtt       300
     ttttgtccaa aatacgcgtc tcgtcctgac tacgctttcg accaccgaca agagcagaca       360
     taaacgtgtg tgaattttca tttcagtaag accattaata cttgagtctt cttccaagag       420
     tgataaatgc gatcatatcg ctacgcgata aaatacgcgc ttgttacaac gtatgcgcga       480
     gtgacaaaat aacagaggaa cagcatccct tcgacgaatc cgcgacccag ggtagtgact       540
     cctaggcgac gtccttacgg actcagggcc gctgtcttta ggcgtcatcg cggtagatac       600
     acacatctcc tttagacgtc accacggtat gatgtaaata cacgaacaaa taaataccaa       660
     ttataatatt ggcaatttgt acaatattaa ataaaataaa tctttaaaaa atccagtgcg       720
     ccaaatttaa gtgttttcca ctgaaca                                           747
//
ID   BEL-4_SiCu-I repbase;    DNA;    INV; 6113 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-6113
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4980-4980 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..6078
FT                 /product="BEL-4_SiCu-I_1p"
FT                 /note="CIG1579, DUF1759, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTEQVTGKRQSVPPHRVTYTGLGQQREAQLTLRNKDK
FT                 QQSKMTTDMSLGIRVSAIISRIKELETWNSGWAAEKEKSESMLASYEGKTG
FT                 LVDNDKKVLEKAKETIDKAVLYTNQNLAEINSLKVELATLEQGMKTQVESD
FT                 AAHQQQAQSFPTARPPVLSVVGSMKSGTVRRKHEEALKTSASVLDLKHKYE
FT                 EEYDAIQDKRGEIEELLKNATTEEFSSKLQAELTTISREEDKLRRNFERKK
FT                 RQLEEKGELQQQLIDIEDDDSQYLGSDEDAELSPPHSEKGRKKIGELPHHH
FT                 HKREQIQKRKEFNPNAEPFQSRPPRKDINWSEEMENDEEPPPNHRPSCSDP
FT                 VQQLAEALSRIGSHGGGGGGGREKMLPEFAGDPAQWCIFKAAYHRTTRKFR
FT                 IDKGENLSRLQGALKGDAKAAVLHLMANVQNVDRIMAVLERRFGRPELVLD
FT                 YLVERAKQCKPPELGKPSSMVEFGTTVEALVTNICAFNEKEYLYNKQLITE
FT                 LVKKMPATLQDKWYGWLIEDSDRKPNLKFFSTWLDRETRIAELRMTPEVTF
FT                 SSTSQGSGRRRREGGAIHSSVEDKEDKSACPICGKTNHKVTRCFSFKKKSN
FT                 DERWEAVKSKKLCFLCLGESHNTKTCTSSKACGVDGCTYKHHAMLHRKGSL
FT                 KKKDSDRNMKIFKSSKQSGSDDDDDHSDGGESSKEGKEGNFMIGGVSRHDL
FT                 ESGSLAIIPVEVSGPAGTKRVFAFLDMGATTSMIEDSLASEIGLAGEKRPF
FT                 SFTVFGEDKKTERNSRIVKLRIAGTGKSHQYEMKNVRTVKKIAMPKMSLDV
FT                 DQLKERHPYLRRMKLNSFRDAEPKILIGFDNFKIYAPRVILESKDKDDSPM
FT                 GCKGHLGWYVCQSKKGKDSCNFLAMALAQEEEDLHNTVKDFFSFENFGVKV
FT                 FANSQRSVEDKKALDLLDANTVKRKERWETSLLWKTENLKLPESKSTASKF
FT                 LKVMEKKMDADPKFAQLCLEKFEDYFEKGYLREKVVTENDAQRYYLPWFFQ
FT                 FHPTKKPRLVFNAAAKTNGKCFNDFLVKGPDLLRPLPAVLMRCRSHLYAVT
FT                 ADIKEMFHQVALREEDIQSQTILFRGIDRKTPPKEYEMTRLFFGSTSSPSS
FT                 AIYVKNRNADGFKEAYPGAVKSIELDFFMDDFLSGRDTEDEALLLQQQVTE
FT                 IHAKGGFPIVKWNSNSSKVLSSIPPEIRANEDVKFAEKTSVAPEKTLGLYW
FT                 NAQKDEFCFKLSFHRVKKEVAEGTCIPTKRQVTSLIMAIFDPLGFLAPLKI
FT                 KGLIILQDIWRAGVGWDDQVPHSIFEDWKPWLQELEQVKEIRVPRRLCNAS
FT                 LKTASSIQLHIFTDGSEAGYSCCAYLRIQTGGSVEIKFVMGKARVAPLRGC
FT                 SVPRMELQAALMGSRLARTIKEAHGDQFQIERTIFWCDSRTVLCWIRSTTG
FT                 RFSQYVSSRIAEILENSDEKXWRWVPTSLNVADDATRFVKNLEFTSQSRWL
FT                 QCSEFLYSSEEMWPAERKIDVPEDILERKEVVRFAAVGGDDEEEILPDIEK
FT                 FSSWHRLVRATAARYWAARKFLKKGPQYITTDDMKKATLLWIKRSQKNWFQ
FT                 EELKCLQAGKPVKSSSPIFSLSPKLNDNGIIIMSGRLENAAVGENVKSPPI
FT                 LDPDDSYTRLMIQWFHRTSQHFGQERIINELRQHAWILRCRVAVRKCKAEC
FT                 MICKKKTAKPVPPRMGQLPAGRIESGHPPFHHTAVDYFGPFNVKIRRGTEK
FT                 RWGVLFSCQTTRAVHLELAESLDSSDFLNALVRFINLRGKPAHIWSDNGTN
FT                 FVGGEREIRENMKLWNEDEMRRSLGVHGINWHFIPPSSPHMGGSWERLVGV
FT                 VKKILYQLLKEQQPKESVLRTLLTEVTYVMNSRPITRASPDPEDLHCLTPN
FT                 DLLNIKCVVGPALPGLYVSGDRYRKSWRQVQLFACDFWKRWSVEYLPWLAK
FT                 REKWEKAAKPLEVGDVVLVLEDNAPRNSWKMGKIVMTFPAKDGQVRSVEVL
FT                 VARVDPKDPKKTVGYTYLRRPAMKICPLSP"
XX
SQ   Sequence 6113 BP; 1846 A; 1200 C; 1628 G; 1435 T; 4 other;
     tttttggtgc cgaaacccgg gaaagggtgt ggacaagatt atctgaagag tttgaagatc        60
     gttatgacgg aacaggtcac cggaaaacgg cagtcagttc cacctcacag agttacgtac       120
     acgggattgg gccaacaacg tgaagctcaa ctgacgttac gcaacaagga caaacaacaa       180
     agcaaaatga caacggacat gtcattaggg ataagggtca gtgccatcat ctccagaatt       240
     aaggaactgg aaacttggaa ttctggatgg gcggctgaaa aagaaaaaag tgaatccatg       300
     ctagccagtt atgaaggaaa gactggtcta gtggataacg acaagaaggt gcttgagaag       360
     gctaaggaaa ccatcgacaa agctgtgctt tacaccaatc aaaatttggc tgaaatcaac       420
     agtttgaaag tggagctagc gacgttggag caagggatga agacgcaagt tgagagtgat       480
     gcagcacatc aacagcaagc tcagtcattt ccaacggcta ggcctcccgt tttatcagta       540
     gtgggatcca tgaagtctgg tactgttcgg aggaaacacg aagaagcctt gaagacatcc       600
     gcttcagttt tggatctcaa gcacaagtat gaagaagaat atgacgccat tcaagataaa       660
     cgaggcgaaa ttgaagagct cctgaaaaat gcgactactg aagaattctc atccaagttg       720
     caagctgagc tgacgacaat ttctcgcgag gaggataaac tgaggaggaa tttcgagcga       780
     aagaagcggc agttggaaga aaaaggagaa cttcaacagc agttaatcga tattgaagat       840
     gatgatagcc agtacctggg gtcagatgag gacgccgaat tatcaccgcc tcattctgaa       900
     aagggacgga agaaaattgg agaattacct catcatcatc ataaacgtga gcagatccag       960
     aagcgaaagg aattcaaccc gaatgcggag cctttccagt cacgccctcc aaggaaagac      1020
     ataaattgga gtgaggaaat ggaaaatgat gaagagccgc ctcctaatca tcgtccatcc      1080
     tgcagtgatc ctgtgcagca gttagcagaa gccctgtcgc gaataggaag tcacggtgga      1140
     ggtggaggag gaggaagaga gaaaatgcta cccgagtttg ctggagatcc tgctcaatgg      1200
     tgcattttca aggctgctta tcaccgtacm acmcgcaagt tcagaatcga caaaggagaa      1260
     aacttatcaa gactgcaagg cgctctgaag ggagatgcaa aggcagcagt ccttcacctt      1320
     atggccaacg tccagaatgt ggatcggatc atggcggtgt tagaaagaag atttggacgc      1380
     ccagagcttg ttttggatta cctggtggag cgcgccaaac aatgtaagcc accagagctt      1440
     gggaaaccca gcagcatggt cgagtttgga acaacagttg aagcgcttgt taccaatatc      1500
     tgcgctttca acgaaaaaga atacctgtac aacaagcagc ttatcacgga acttgtgaag      1560
     aagatgccgg cgacgctgca ggacaaatgg tacggttggc tgattgaaga ttcagacagg      1620
     aagccgaatc tcaagttttt ctctacatgg ctggatagag aaacaagaat tgctgagctg      1680
     aggatgactc cagaggttac attctccagt acctcccaag gaagcggaag aaggagacgg      1740
     gaaggaggag ctattcattc gtcagtggaa gacaaagaag ataagtcagc ctgccccatt      1800
     tgtggaaaaa caaatcacaa agtgacccga tgcttcagct tcaaaaagaa gagcaatgac      1860
     gagagatggg aagctgtcaa aagtaaaaag ttatgctttc tctgtctcgg tgaaagtcac      1920
     aacacgaaga catgtacctc atcgaaagca tgtggcgtcg atggatgtac ctacaagcat      1980
     catgctatgc tccaccggaa aggatcactg aagaagaagg acagtgacag gaatatgaag      2040
     attttcaagt catcaaagca aagcggcagt gatgacgatg acgaccattc tgacggtgga      2100
     gaaagcagca aagaaggaaa agaaggaaac ttcatgattg gtggagtttc aagacatgac      2160
     ctggaatctg gctcattggc tattatccct gtagaagtaa gtggtcctgc tggaactaag      2220
     cgtgtttttg ctttcttgga catgggagct actacttcaa tgattgaaga ttcactcgcc      2280
     agcgaaatcg gactggcggg tgaaaagcgg ccattttcct ttacggtgtt tggagaagac      2340
     aagaagacgg aaagaaactc cagaatcgtg aagctgagga ttgcaggaac agggaaaagt      2400
     catcagtacg aaatgaagaa tgtacgtact gttaagaaga tagccatgcc aaagatgagc      2460
     ctagatgtgg atcagttgaa ggagcgtcat ccttatcttc gtcgaatgaa gcttaactca      2520
     ttccgtgatg ctgaaccgaa gattttaatt ggattcgata acttcaagat ttacgcacct      2580
     cgagttatct tggagagcaa ggacaaggac gactcaccca tgggatgcaa aggtcatttg      2640
     ggatggtatg tatgtcagtc aaagaaagga aaagattcct gtaacttttt ggcaatggcg      2700
     ttggctcagg aggaggagga tctacacaac acggtgaaag atttcttttc ttttgaaaat      2760
     tttggagtga aagttttcgc caactcgcaa cgctctgttg aagacaagaa ggcactagac      2820
     ttgctggacg caaatacagt gaagagaaag gagcgctggg aaacgtcatt attgtggaag      2880
     actgaaaact tgaagttacc tgaaagtaag tcaacagcaa gcaagttcct gaaagtaatg      2940
     gaaaagaaga tggatgcaga tcctaaattt gctcaacttt gtttggagaa atttgaagat      3000
     tattttgaaa aaggatacct acgtgagaaa gtggtcactg aaaatgatgc tcagcgttac      3060
     tatctgccgt ggttcttcca atttcacccc accaagaagc cgaggttagt ttttaatgct      3120
     gctgctaaaa ctaacggaaa gtgctttaat gacttcttgg tgaaaggacc tgatctcctc      3180
     cgtcccttgc ctgctgtcct aatgagatgt agaagtcatc tttacgctgt aaccgctgac      3240
     attaaggaaa tgtttcatca ggtggccctg agggaagaag atattcagag ccaaaccatt      3300
     ctgtttcgtg gcatagacmg gaagacgcca ccgaaggaat atgagatgac aagattgttc      3360
     tttggttcta catcatcacc aagttcggcg atttacgtta aaaatcgtaa tgctgatgga      3420
     ttcaaggaag cttatcctgg agctgtgaag tcaatcgaat tagacttttt tatggacgac      3480
     tttttatctg gacgggacac agaagacgag gcgttactac tacaacagca ggttacggag      3540
     atccatgcta aaggaggatt tccaattgtc aagtggaata gtaacagcag caaagtgtta      3600
     tcgtcaatcc ctccagagat cagagcaaat gaagatgtta aatttgctga gaaaacatct      3660
     gtagctcctg agaagaccct gggcttgtat tggaatgctc agaaagacga attctgtttc      3720
     aaactgtcct ttcatcgtgt gaagaaggag gttgcggaag gtacttgcat tccaaccaag      3780
     aggcaagtca caagcttgat catggccatt ttcgatccat tgggattctt ggccccactg      3840
     aaaattaaag gactcatcat tttacaagat atctggcgag ctggagttgg atgggatgat      3900
     caagttcccc attccatttt tgaagactgg aaaccgtggc tgcaggaatt ggagcaagtg      3960
     aaggagattc gtgttccacg gcgcctgtgt aacgcatcct tgaagacagc gagcagcatt      4020
     caactgcata ttttcactga cgggagtgaa gctgggtaca gctgttgtgc ttatctgcgt      4080
     atccaaacgg gagggagcgt ggagatcaag ttcgtgatgg gaaaagctcg tgtcgcccct      4140
     ttgcgaggat gttctgtgcc aaggatggag ttacaggctg cgttgatggg gagtcgtctt      4200
     gctcggacaa ttaaggaagc tcacggtgac caattccaga ttgagaggac gattttttgg      4260
     tgcgactcgc gtactgttct ctgttggatc agatctacaa caggaagatt ttctcagtac      4320
     gtgtccagtc gaattgcaga aattctggaa aattcagatg agaaaakttg gcgatgggta      4380
     cccacatcat tgaacgtagc agatgatgct actcgctttg taaagaatct ggagtttacg      4440
     tcacaatctc ggtggctcca gtgttcagag ttcctgtaca gcagcgaaga aatgtggcct      4500
     gctgaaagga aaattgatgt tcctgaggat atcttggaaa ggaaagaagt agttcgtttt      4560
     gccgcagttg gaggcgatga tgaggaagaa atcctaccgg atattgagaa gttttcctca      4620
     tggcaccgtc ttgttcgagc gacagcagcg cgatactggg cagcacgaaa attcctgaag      4680
     aaaggacctc aatacatcac cacagacgac atgaagaagg cgacgctttt atggataaag      4740
     cggtctcaga agaattggtt ccaagaagaa ttaaaatgtt tgcaagctgg aaagccggtg      4800
     aaaagttcca gcccgatttt ctcactttcc cccaagctga atgataatgg cataattatc      4860
     atgtctggac gactggagaa tgcagcagtt ggagagaatg tgaagtctcc ccctattctg      4920
     gatcctgatg acagctacac gaggctgatg atccagtggt tccaccgtac cagtcagcat      4980
     tttggacaag aaaggattat caacgaatta cgacaacatg catggatctt gagatgtcga      5040
     gtagctgtgc gaaaatgtaa agctgaatgc atgatttgca aaaagaagac agcgaagcca      5100
     gtgcctccaa ggatgggaca gttaccagca ggaagaattg aaagcggtca tcctccattc      5160
     caccacactg ctgtggatta ttttggcccc tttaatgtga agatacgaag aggaactgag      5220
     aaacgatggg gagtcctttt ctcgtgtcag acaacgcgtg ctgtccactt ggagttggca      5280
     gagtcgctgg attcgtcaga ctttcttaac gctttggtgc gcttcatcaa tctgcgtgga      5340
     aagccagcgc acatttggag cgacaatggg acgaatttcg tcggaggaga acgtgaaatt      5400
     cgtgagaata tgaagctatg gaacgaggat gagatgcgta ggagccttgg tgttcatggg      5460
     attaactggc acttcatccc tccgtcatct ccccacatgg gagggagttg ggagcgtctt      5520
     gttggagtgg tcaagaagat cttgtatcag ctgctgaagg agcaacagcc caaggaaagt      5580
     gtcctgcgta ccttgctgac tgaagttacc tacgtcatga atagtaggcc gattaccagg      5640
     gcgtcacccg atcctgagga ccttcattgt ttgacgccaa atgacttgct gaacataaaa      5700
     tgcgtggttg gaccagcgtt gccaggcttg tacgtgagtg gggatcgtta tcgcaaatcg      5760
     tggagacaag tccaactatt cgcttgtgac ttttggaaga ggtggtcagt cgagtacctg      5820
     ccgtggcttg ccaagcgaga aaagtgggag aaagctgcta aaccgctgga agttggagat      5880
     gtagtgctcg tattggagga taatgcacct cggaattctt ggaagatggg aaaaatcgtg      5940
     atgacgtttc cagccaagga cggtcaagtg agatccgtgg aagtactagt agctcgtgtg      6000
     gatccaaaag acccgaagaa gacggttgga tatacctatc tccggaggcc agccatgaag      6060
     atatgccctc tcagccctta gtttggaaac ggtccgtttc gggagggaga aaa             6113
//
ID   BEL-4_SiCu-LTR repbase;    DNA;    INV; 575 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-575
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4964-4964 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 575 BP; 139 A; 96 C; 121 G; 219 T; 0 other;
     tgtggctgag tggagaggat tttaataata tgtagaaatt ttgtcattga tttttctttg        60
     tttattgtag cggtaaaatt gaatgtagca gcacgtcaga aatttatgta aaaatgttcg       120
     tttctttgtc ctgttccttc aggaactttc ggtttgcttt tctttttgtg ttcgttgctt       180
     tctggtgcga aacgtagact gcaactgcgt agaaaattgt atctttgcct gagcgagagc       240
     tcattctggc attatcattc tggtcgtgcg aggaagagag aaaaattatt gttgtcttgt       300
     ctttggtggt gctgctacac ctttttaatt aattgttttt cgattattgt tgtttgattt       360
     aattttcgaa agttaaataa actaatgtca ttaaagatta agtagcttct aatcgtagtt       420
     ttgacctttt cttgtcattt taatcggtca ttttcggcaa ttcttcagta tcgaagtcat       480
     ccaccccgcg aacattatag ggacgctttg gagctggcgt tgcaacggaa ggcgaattta       540
     atttcactac gacctcgtca ccccagtcca cgaca                                  575
//
ID   BEL-4_SpEx-I repbase;    DNA;    INV; 6214 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6214
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6886-6886 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           991..6192
FT                 /product="BEL-4_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSTSKSTELSTLVRQRGNIRGRLTTQTQYINTLKLVD
FT                 CSSLSNAQVIEIKLHLKKCETLYKDFETFQDKIELLCDESEIQEQINTRST
FT                 IENQFITAISTLQDILEKLNPVNVKSQLPSQSNESSVKLPTIKLPVFDGSY
FT                 LKWLEFRDTYLSLIHENASIQDINKFHYLRASLEGSASEVIKSLEFTSINY
FT                 KIAWDLLCARYDNKRVLINSHLKSLHLINPITTESHKALRNLLDHVNKNMR
FT                 ALKALGIPTEYWDVHIIFIITMKLDATTNMKWEEYLSNCSDNPTLDQFYTF
FT                 IRNRADVLENAVSRTTNHSESSSNSNSNNHNKKFWNNNNNNSVSKNNKSFD
FT                 NLKISSPVASGETVCDFVCLCCNKQGHRIYDCPKFKDMDVPHRVTEVKRLK
FT                 VCHNCLREGHNFQNCRLKSMCRHCKYSHNTLLHLNKNDKHLENINSTVASQ
FT                 SQTLPPVTLSGISNSSQVLLCTAVVSVKNMINNETYPVRALLDSGSQSSFV
FT                 TDNLKRKLNLPVHNIEPLRVSGINNVAFSISERVTLGIESRNKNFSTMITC
FT                 LVVPKVTGTLPNSPVNILELDLPPNIELADPYFYCPAEVDLLLGADIFWDL
FT                 VGFKRITLGVGRPVLQESQLGWLVSGPVGIYKPGHVICNYTHNINDNLQKF
FT                 WEIEELNLKINIGTPEERLCESHFQENVKRLSNGRFSVKMPLKEIPEEALG
FT                 DSFYLAKKRFLSLENKLNKNPNLKEQYFNFIKEYRDLGHLTEIQRPSFGYY
FT                 LPHHAVLKEKSETTKLRVVFDASAKTTSGKSLNDIQLIGPVLQDDLTSILI
FT                 RFRCFRYVITGDIQKMYRQIEIDPSQRHLQLILWRDDEAGSGSVSGHPRPI
FT                 KVLQLNTVTYGTASAPYLSTRCILQLARECPDTTISNILEHDVYIDDLTTG
FT                 AESKDSIKHIYSSVENVLNSAGFPLHKIRTNCPEAFQNDTTTSVLELNKES
FT                 SVLGLNWSPDTDTLHFSTDLSSDNNKITKRSIISLTCKIFDPLGLLCACVI
FT                 KAKIILQLLWNEKLAWDDPVPSHIAKKWLDIAENLKTLSDIKIPRYALCDD
FT                 FFTNVELHCFVDASHEAYGACVYLRSTDSSNNIVIRLLCAKSRVAPLKAMT
FT                 TPRLELCSALLGARLVAKVLQSIRISITNTIMWTDSTVVLGWLKAQPKLLK
FT                 TFVANRVAEVLELTKGCSWRHVPTDFNPADLASRGVVPQRLLVEPLWWEGP
FT                 SFLKEGSSSWPQTPHSIVELPELKAYVNAAEAPENHFINFKDFSNFNRLKR
FT                 IFAYVLRFISNIHNKHNKCTGTLQTVEINKALNLLIKFSQGECFTTEIKAL
FT                 SSGQHLNKKSKLLQLNPFIDTEGLLRVGGRLENSSYEYNKKHPVILDGRHT
FT                 FTSLLLQHEHRRLFHAGPQLLLSSIRDSYWPIGGRQLARKVAKSCVICARY
FT                 RGKTIQPIMGNLPAVRTEATFPFYSSGTDFAGPFLISSKRGRGNRKTKCYL
FT                 CLFVCLNTRAVHLEVVSDLTTDAFILCLRRFIARRGKPKVLYCDNGTNFIG
FT                 ANNELGKILRSSRESVTDFATSEGIDFVFSPAYSPHFGGIWEAGVKAAKYH
FT                 LVRIVGNQSFTFEELTTLFSQIEAILNSRPLSPISSDPFDLTPLTPGHFLI
FT                 GRPLVSLPSHPADDGRPKYHAITKIRDEFWERWRKEFLAELQLRTKWTTPQ
FT                 ANPKVGDMVVIKEDFSPPQRWRLGRISRLHQGPDNVCRVVDIYTARGTIRR
FT                 AIHNVVRLPQEVES"
XX
SQ   Sequence 6214 BP; 1898 A; 1140 C; 1207 G; 1968 T; 1 other;
     cctggcgacc gtgcaaaaag aagaataact gcaatcttcg gataaactac aaaaaccaaa        60
     aggagtttgg tgtcagcgca acatggcggc caacgcgaac gcctaaaaca aacgacgact       120
     acgactatac atatattatt tggaaagaag acaagtccac ctgcgagctg ctagtaagga       180
     tacctagcca ccatgggaag tgctcgtttt tcctcctcct ttcttttcca actgtccgct       240
     atcgggtgaa agtaatgtag tcaattcatt tgatttaatt ttctaaamat tcgtcgtccg       300
     ccatttgtat gtttctatat aaaattaaat ttcattttag ttcgtcatga ttagaaaggt       360
     tggtcatttt caagtaattt tttcttatta aaattttaat atatggccta acttgggtac       420
     tttcaagtcg ataatttaag ccttaactgt gataggcact agtacctagt taaaactaat       480
     attttgctgc cttgataccc tgccgcccgt tcttcctaca tttatttttc atgccactcg       540
     gctgagcatt cttattttct ggtgtgtgtg acacgcggca tgggtttgcc tacttcttgc       600
     atattatgca catgggggtt tctttgtttt cactgtaaat tttagccgtc cttatttgca       660
     ccattttcta gcttgctttg cttagctttg cttcataaga tttgccgaac gtttccagat       720
     tcgtatgctt ggcgcggctg tgggcataaa tatccagccc gttttgcatt gcatgagaga       780
     agtgcgcctg tgctgcatgt agtatccatc tacgccgcgc caggtttgag cactactggg       840
     acgccgtgca gtctgcaata aggcggtgac tttcctgtgc tacacactgc gactggagta       900
     aggaacaata attgggttag atgcacaatt tatttaccta gttcattata tttctttgtt       960
     aatatttgtt gtgagtgatt aaatttaaag atgtctactt ctaaaagtac tgaactaagt      1020
     acattggtta ggcaacgtgg aaatataaga ggtcgtttga cgacgcaaac acaatacata      1080
     aacactctca agttagtgga ttgctctagt ttatcaaatg cacaagttat tgaaattaaa      1140
     ttacatttaa aaaagtgtga aaccttatat aaagattttg agacctttca agacaaaata      1200
     gaattacttt gtgatgaatc tgaaatacaa gaacagataa atactagatc tacaatagag      1260
     aatcagttca ttacagcaat ttcaacctta caagatattt tagaaaagtt aaatccggtt      1320
     aatgtcaaat cacaattacc ctcacaatct aatgaaagtt cagttaagtt accaaccatt      1380
     aaattgcctg tgtttgatgg ctcatatttg aagtggcttg agtttagaga tacttatttg      1440
     tctttaattc atgagaatgc atcaatacag gatatcaata agtttcacta cctgcgggct      1500
     tcactggagg gcagtgctag tgaggttata aagtcattag agtttacatc aataaattat      1560
     aagattgcat gggatttatt gtgtgctagg tatgataata agagagttct cattaatagt      1620
     catttaaaat cattacattt aatcaatccc atcacaacag aatcacataa agcattgcgg      1680
     aacttattgg atcatgttaa taaaaatatg agagcgctta aggcccttgg tatacccaca      1740
     gaatattggg atgtccacat tatattcatc ataactatga aattagatgc cactacaaat      1800
     atgaaatggg aggaatattt aagtaattgt tctgacaatc caactttaga tcaattttat      1860
     acgtttatcc gtaaccgtgc tgatgtttta gagaatgctg tatctcgtac aacaaatcat      1920
     agtgaaagtt cgagtaattc taactcaaat aatcataaca aaaaattttg gaataataat      1980
     aataataatt cagtttcaaa aaataataaa tcatttgata acttaaagat ttcgagtcct      2040
     gtagcatcag gtgagactgt atgtgacttt gtgtgtttat gttgcaataa acaaggacat      2100
     cgcatttatg attgtccaaa atttaaagat atggatgttc cccatagggt aacggaagtt      2160
     aaacgattaa aagtatgtca taattgttta cgtgaaggtc ataactttca gaattgtcgt      2220
     ctgaaatcca tgtgtcgtca ttgtaaatat agtcataata ctttgttgca tttaaataaa      2280
     aatgataagc acttagaaaa tattaattct acagttgctt cacagtcaca gacactgcct      2340
     ccagttacac tgtctggcat ctctaatagt agtcaagtat tgctgtgtac tgctgttgta      2400
     tcagtaaaaa atatgattaa taatgaaact taccctgttc gcgcgttgtt ggacagtggt      2460
     agccaatcgt cctttgtgac tgataatctg aaaagaaaat taaacttacc tgttcacaat      2520
     attgaaccgc tccgtgtctc gggcattaat aatgttgcat ttagtatatc tgaacgtgtc      2580
     accttaggga tagaatcaag gaataaaaat tttagtacta tgataacatg tctagtagtc      2640
     cctaaggtaa caggtacttt gcctaattct cctgttaata ttctagaact agacttacct      2700
     cccaatattg agcttgcaga cccatatttt tattgtcccg cagaagttga tttactgttg      2760
     ggcgctgaca tattttggga tttagtaggg ttcaagcgta taactctagg tgtaggtaga      2820
     ccagttcttc aggaatcaca gttaggttgg cttgtaagtg ggccagtggg tatttataaa      2880
     cctggccatg ttatttgtaa ttatactcat aatattaatg ataatttaca gaaattttgg      2940
     gaaattgaag aattaaattt aaagattaat attggcacac ctgaagaaag gttgtgcgag      3000
     tcccattttc aagaaaatgt caaacgcctt agtaatggta gattttcagt aaagatgcct      3060
     ctgaaggaaa ttcctgaaga agctcttgga gattcttttt atttagccaa aaagcgtttt      3120
     ttatctttag agaataaatt aaataaaaat cctaatctaa aagaacaata ttttaatttt      3180
     attaaagagt atcgtgactt gggtcattta actgaaatac agagacctag ttttggttat      3240
     tatttgccac atcatgctgt tttaaaggaa aaaagtgaaa ctacaaaact cagagtggtt      3300
     tttgatgcct cagccaaaac cacttctggt aaatctttaa atgatattca gcttattgga      3360
     cctgtgttac aagatgattt aacttcaata ctaattcgtt ttcgatgctt tagatatgta      3420
     attactggag acattcaaaa gatgtacaga caaattgaga ttgatcccag tcagcgccat      3480
     ctgcagctca tattgtggag ggatgatgaa gcaggatcag gttctgtgtc aggacatcca      3540
     cggccaatta aggtactcca attaaatacc gttacttatg gcacggcctc agcgccctac      3600
     ttaagcacga gatgtattct tcaattggct cgtgagtgtc ctgacactac catatctaac      3660
     atcttagagc atgatgtata catcgacgac ctgactacag gcgccgaatc taaggattct      3720
     ataaagcata tttatagtag tgtagaaaat gtattaaatt cagctggttt tccgctacat      3780
     aaaattagaa ctaattgtcc tgaagcattt cagaatgaca ctacaacttc agttttagaa      3840
     ttaaataaag aatcgtctgt tctgggtttg aattggtcac cagatacaga tactttacat      3900
     tttagtacag atttaagtag tgataataat aagataacaa aacgttctat aatttcactt      3960
     acctgtaaga tatttgatcc attaggtctt ttatgtgctt gtgttataaa agcaaaaata      4020
     attttacaac tattatggaa tgagaaatta gcctgggatg atccagtgcc atctcacata      4080
     gctaaaaaat ggttagatat agcagaaaat cttaaaacat tgtcagatat taaaatacca      4140
     agatatgcat tatgtgatga tttctttact aatgttgaat tacactgttt tgtagacgca      4200
     tcgcacgaag catacggagc gtgcgtctat ctacgttcta cggatagtag caataatatt      4260
     gtcatcaggt tattgtgcgc aaagtcgagg gttgcgcccc tgaaggccat gaccacccct      4320
     cgcttggaat tgtgtagtgc tttgcttggt gctcgactgg tagcaaaggt acttcaatca      4380
     attcgtattt ctatcaccaa tactattatg tggactgatt caactgtcgt cctgggttgg      4440
     cttaaggctc agcctaaact tttgaaaacc tttgttgcca atcgtgtagc tgaggtatta      4500
     gaattaacta aagggtgttc atggcgacat gttcccactg atttcaatcc tgcagatctg      4560
     gcctctaggg gggttgtccc tcaacgcttg ctcgtggagc ccttgtggtg ggaaggacct      4620
     tccttcttga aggaaggctc ttcttcctgg ccacaaactc cacactctat agtagagctt      4680
     ccagagctta aggcgtatgt gaacgctgct gaagcccctg aaaatcattt cataaacttt      4740
     aaagattttt caaattttaa cagactgaag agaatttttg cgtacgtttt aagatttata      4800
     agcaatatac ataataaaca taacaaatgc actggtacgt tgcaaacagt agaaataaac      4860
     aaggctttaa atctacttat taaatttagt caaggtgaat gttttacaac tgaaataaag      4920
     gcactatctt ctggtcaaca tttaaataaa aaatcgaagt tattacagtt aaatccattt      4980
     attgatacag aaggcttgtt gagagtaggc ggtcgattgg agaactcctc ctatgaatat      5040
     aataagaaac atcctgttat tttagatggc aggcatactt ttacatcctt gttattgcaa      5100
     catgaacatc gccggctatt tcacgcaggt cctcagctgc tgctgtcctc gatacgtgac      5160
     tcttattggc ctatcggagg taggcagttg gcgcgcaagg tcgcaaaatc ttgtgtaata      5220
     tgtgctcgct atcgcggtaa gactattcaa cctattatgg gaaatttacc cgcagtaagg      5280
     acagaagcaa ccttcccctt ctattcaagt ggcactgact ttgcaggccc ttttcttata      5340
     tcaagtaaaa gggggagagg taatcgtaaa acaaaatgtt acctttgttt atttgtgtgc      5400
     ttgaacacta gagctgtcca cttggaggta gtgagcgatc tcactacaga tgcctttata      5460
     ttgtgtttgc gtcgtttcat cgcgcgtcga ggtaaaccta aagttttata ttgcgataac      5520
     ggtaccaatt ttataggagc aaataatgaa cttggtaaaa ttttgcgctc cagtcgtgag      5580
     tctgtcacag attttgctac ctctgaaggt atagatttcg tttttagtcc agcttattct      5640
     cctcatttcg gaggtatatg ggaggcgggt gttaaggcag caaaatatca tttagttagg      5700
     attgttggta atcaatcatt tacttttgaa gaattgacta cgctattttc acaaatcgaa      5760
     gctatcttaa actcccgtcc tctttctcct atctcgtccg atccttttga cctaactccc      5820
     ctcaccccag ggcacttcct cattggacgg cctctggtgt cattgccctc gcatccagca      5880
     gacgacggca gaccgaaata ccacgcaata acaaaaattc gtgatgaatt ctgggagcga      5940
     tggcgaaagg aattcttggc ggaattgcaa ttgagaacta aatggacgac tcctcaagcc      6000
     aatcctaagg tcggggatat ggtagtaatt aaagaagatt tttcaccacc gcaacgctgg      6060
     cgccttggcc gcatttcacg tctgcaccag ggaccagaca acgtgtgtcg agtggttgac      6120
     atttacaccg ccagaggcac tattcgccga gcgatccaca atgtcgttcg gctaccacaa      6180
     gaagttgaaa gttaaacttt caagggccgg agga                                  6214
//
ID   BEL-4_SpEx-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-200
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6875-6875 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 200 BP; 57 A; 47 C; 42 G; 54 T; 0 other;
     tgtctacgcc ggaacgcatc attcttcgtc gtgtatggaa cgcatccgta gcgcgagcga        60
     gaggttcgag ctgcgcgcct tccggccact gccattctaa tagtcgcgac gaaaacacac       120
     tcaattattg taaaacttat attataatta gcgattaaag aagtacatct gcaaagggat       180
     ctacttattt atatcgatca                                                   200
//
ID   BEL-4_TrNi-I repbase;    DNA;    INV; 5845 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5845
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1029-1029 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..5843
FT                 /product="BEL-4_TrNi-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MPVTRSEGKGRKVATQQKPSSEDTATTSGTGNSAETA
FT                 IDSTATGTTATETTEYTSASVTTATTQSSATAATSGTAATSGATATAGTTA
FT                 AAATATNAPTVSDSAATTLPAHAVKKTNMNPPRGGVTAGVNKNRTEASTVK
FT                 RNRKDATGPHETGGPTTPRAPSKRGGGGGSTHSKKAQRIAKAKEELLRLQV
FT                 ELAAAKLAALETEDTEDEDEEGDVSITEVNEKVSNWLDTNKNTAEEDATPQ
FT                 QKTQQPAQPAPAGGPADFSQLAEAITFAVKAAQRPKFIELPIFSGAHQEWL
FT                 PFRAAYYETASSYSPIENTNRLRRNLKGRAREAVEGLLITSAAPEEVMKTL
FT                 ESRFGRPEAIAMVEMEALRGLPRLTESPRDICIFSTKVSNIVATLKTLSCL
FT                 NYLYNPEICKSLVDKLTPTLKYRYFDYAASQQKSEPDLVKMERFLRREAEL
FT                 CGPYALPEQVAAPPTVRKPQRVNNVQTYTPKCPACDETGHNTQDCAEFKKK
FT                 DNSGRWDLAKARKLCFRCLRYRNKTHSCKPKPCGIDNCKYFHNRLLHFERS
FT                 TEKIPTEEQDKEVINSAWTAKRKQSYLKIVPLKVKGPKGVVDTFALLDDGS
FT                 TVTLIDEEVAKEIGATGPVDPLRIETINELKTSEAASRRVTFRLKGMNGHE
FT                 ERVQARTVKNLQVSSQKVSREVVQDCKHLTDLMGHLTYDQAKPRLLIGQDN
FT                 WHLLVTTRIRRGDHHQPVASLTPLGWVLHGSQTRTMKHAIDYVSHITEESP
FT                 EDDLEAMVKKYFEMDSLCIVPKKPTTDPEQQALRVLEKTTRRIGEGRYETG
FT                 LLWKQEDISFPNNYCNAVKRLENIERKLDRDPKLKQKYNEQMEALVAKGYA
FT                 ERAPADKNPKKTWYLPHFAVINPMKPEKLRVVHDAAAKTRGVALNDMLLKG
FT                 PDLMQSLPGVVMRFRQHQIAVTADIKEMFMQVKLREADRDSLRYVWRGNRR
FT                 DDQPPEEYRMTSLIFGASSSPSTAIYVKNLNAKEHEATHPEAAAAIIEKHY
FT                 VDDYLDSFRSLEDAVRIAKGVRDIHAKACFELKQWKSNSTLLLQELGEEEL
FT                 IEDMELYKTEEKTERVLGVIWKLNTDELTFNLNLARVPTTLLEGETPTKRE
FT                 ALRIVMSLFDPLGFASPVTIRAKQLLQEVWRRGTAWDDPIDEDLAEQWTTW
FT                 LTHLQKLRDVKIPRRYLNYSDAASIQLHIFTDASESAYSAVLYWRTKTPDG
FT                 EVKLSLIVAKAKVAPLKLTSIPRLELQAAVMGTRLADSVIEEHERKPDCKV
FT                 FWTDSKTVLTWIRTGSRTYKPYVAHRLAAIEESTKVNEWRWVPTKLNVADD
FT                 ATRDVPLTFDKDHRWYKGPDFLYEEEDQWPVETDTKKIEDTSGEEKVNHVA
FT                 NKRELRLTEGLPEASRFSNWHRLRYTTARVLLFIELCRRNKESVNYRRTKK
FT                 NKEQDPNWNKIARKTSSTNETQKKTTTKINRKFLPVSAENLKQAEELLMRA
FT                 SQEESFAEEIANLRSGKPVNKESRLHQLSVTCVDGALRLRSRIKAVKYMPE
FT                 DFKSPMIIDGDHPIVKTWIRAIHQQLHHAGVEATVNECRQQYWVLRLRPTT
FT                 RSVLRQCLFCRMKTGTPPHPRTGDLPQCRLAHHKRPFTYTGVDYFGPLSVT
FT                 VGRTRQKRYVAIFTCLTTRAIHLEIAGSLSTDSAVMAVRRMISRRGCPTEI
FT                 WSDNGTNLKGAEKELRQQIDEATAEEAAKRTIAWRFIPPGAPFMGGAWERM
FT                 VRSVKTALAATLHERHPTEEVLSTLLAEVEYTVNSRPLTHVSVSPEDPEAL
FT                 TPNHFLLGGQGRVPLPGSFTDKDVASRSSWRAAQRLADLFWTRWVREYLPE
FT                 LQHRREPHGRGPAVQVNDLVQIVDANLPRNVWVRGRVIDTYPGPDGVVRAV
FT                 DIRTKGGVLRRPVRKLVILPLHDDGPAHGGDATSSHGGR"
XX
SQ   Sequence 5845 BP; 1771 A; 1559 C; 1562 G; 953 T; 0 other;
     tttaatggtc cttcgagccg gatacgtgga attgagttgg cctttcgaac atcgaactta        60
     attacagatc gagttgtgaa gaccgaagaa tagaagacag aagcgccatg cccgtcacac       120
     gctccgaggg aaagggccgc aaggtcgcaa cacaacagaa gccatcatcc gaggacaccg       180
     ctacgacctc ggggaccggc aacagcgccg agactgcgat cgattctaca gccacaggga       240
     ctaccgccac ggaaactaca gagtatacat ccgcctccgt gacgacagcc accacgcagt       300
     catcggcaac cgccgcgacc tccggcaccg ccgccacctc gggcgccacc gcgaccgccg       360
     gcaccaccgc cgcggccgca acagcaacca acgcgcctac ggtctcggac tccgctgcta       420
     ccacgctgcc cgctcacgcc gtcaagaaga cgaacatgaa ccccccgcgg gggggggtaa       480
     ccgccggtgt caacaaaaac agaacagaag catctacagt caagcggaac aggaaggatg       540
     caaccggccc acatgaaaca ggtggaccga ccaccccgcg cgcccccagc aagagggggg       600
     gagggggggg atcaacacac agcaagaagg cgcagcggat agcaaaggcc aaagaagaac       660
     tcctgcgcct acaggtcgag ctcgcggcgg cgaagctggc cgccttggag actgaagaca       720
     cagaagatga agatgaagaa ggcgacgtct ctatcaccga ggtgaacgag aaggtgtcca       780
     attggctcga caccaacaag aacacagcag aggaggacgc gacgccacag cagaagactc       840
     agcagcccgc gcagccagca ccggcgggag gtccagcgga cttctcgcag ctggctgaag       900
     caataacgtt cgcggtcaag gccgctcagc gaccgaagtt cattgaactt ccgatcttca       960
     gcggtgcaca tcaagaatgg ctgcccttcc gcgcggccta ctatgagacg gcgtcgtcgt      1020
     actctcctat agaaaacacg aacaggctta gaagaaacct caaaggaaga gccagggaag      1080
     ccgtggaggg cctgctcatc accagcgcag ctccggaaga agttatgaag acattggagt      1140
     caaggttcgg gcgaccagaa gcaatagcga tggtggagat ggaggcgctc cggggactcc      1200
     cacgcctcac ggaatcgcca cgagatatat gcatcttctc aacgaaggtc tccaacatcg      1260
     tcgctacatt gaagactctc agctgtttga actacctata taacccggag atatgcaaat      1320
     ctctggtgga caagttaacc ccaacactca agtacaggta ttttgactac gccgccagcc      1380
     aacagaaaag tgaacccgat ctcgtcaaga tggaaagatt tctcagaagg gaagctgaac      1440
     tctgcggtcc atatgcgcta cctgaacagg tagcagcgcc acctacagtt agaaaaccgc      1500
     agagagtcaa caacgtgcaa acgtatacac cgaagtgtcc agcatgcgac gagacgggac      1560
     acaacacgca agactgtgca gagttcaaga agaaggacaa cagcggaaga tgggacctag      1620
     ccaaggcaag gaagttgtgc tttcgctgtc tgcgttacag aaacaaaacc catagttgca      1680
     agcccaagcc ctgtgggata gataactgca agtattttca caacaggtta cttcattttg      1740
     aaagaagcac agagaagatt cctacagaag aacaggacaa agaagtaatc aactctgcgt      1800
     ggacagcaaa aagaaaacag tcttacttga agatcgtgcc gctgaaggtg aaggggccca      1860
     aaggagtcgt ggacaccttc gctctgctgg acgacgggtc gacagtaaca ttaatagacg      1920
     aagaggtcgc caaggagata ggtgccacag gacccgtcga ccccctacgt atagaaacta      1980
     tcaacgagtt gaagacgtca gaagctgcgt caagaagagt caccttccga ttaaagggta      2040
     tgaatggtca cgaagagcga gtccaagcca gaacagttaa gaacctgcag gtctcatcac      2100
     agaaggtgtc cagggaagtg gttcaagatt gcaagcacct gacggacttg atgggacacc      2160
     tgacgtacga ccaagccaag ccacgactac tgatcggaca ggacaactgg catcttctgg      2220
     tgaccacaag gataagaaga ggcgatcatc accaaccagt ggcctccctc acgccgctgg      2280
     gttgggtcct gcacggaagc caaaccagga caatgaagca cgcgatcgac tatgtatcgc      2340
     atatcacaga agaatcacca gaagatgacc tagaagccat ggtcaagaag tacttcgaaa      2400
     tggactcttt atgcatcgtc ccgaagaagc ccacaacaga tccagaacag caagctctcc      2460
     gagtcctaga gaagacaacg agaagaatag gagaaggaag atacgaaacg ggcctcttat      2520
     ggaaacaaga agacatctcg tttcccaaca attactgcaa cgccgtgaag aggctcgaaa      2580
     atatagagag aaaattagat cgcgacccga agcttaaaca gaagtataat gaacagatgg      2640
     aagcactcgt cgccaaaggc tacgccgaac gtgctcctgc agacaagaac cccaagaaga      2700
     catggtactt accacacttc gctgtcatca atccaatgaa gccagagaaa ctcagagtgg      2760
     tacacgacgc cgccgccaag acaagagggg tggcgctcaa cgacatgctg ctgaagggac      2820
     ctgacctgat gcagtcgctg cctggagtcg tcatgcgttt ccgacaacat caaatagcag      2880
     tcacggcgga cattaaagaa atgttcatgc aagtgaaact tcgagaagct gacagagact      2940
     ccctgcgata cgtgtggagg ggcaacagaa gagacgacca gcctccagaa gagtacagaa      3000
     tgacgtctct gatcttcggc gcgtcgagct caccgtcaac agcaatatat gtcaagaact      3060
     tgaacgccaa agaacacgaa gccacacacc ccgaggctgc agcagcgatc atagagaagc      3120
     actacgtaga cgactactta gacagcttca ggagtctaga ggacgcagta cgtatagcta      3180
     agggagttcg agatatacac gcaaaggcct gcttcgaact caaacagtgg aagtccaact      3240
     caaccctgct actccaagag ctgggagagg aggagctcat agaagatatg gaactctaca      3300
     agacagaaga gaaaacagaa cgagtactag gagtcatctg gaagttgaac actgacgagc      3360
     tgaccttcaa cctcaactta gctcgcgttc cgacaacgct actggaggga gaaacaccta      3420
     cgaagagaga agccttgcgg atagtaatgt cactgttcga cccactcggc ttcgcgtctc      3480
     ctgtcaccat acgggcgaag cagctcctgc aggaagtgtg gcgcagagga acggcgtggg      3540
     acgaccctat agacgaagat ctcgcggagc aatggacgac ctggctgact cacctacaga      3600
     agctacgaga cgtgaagata ccgaggcgat acctgaacta cagcgacgct gcctcgatac      3660
     agcttcacat cttcaccgac gccagcgagt cagcatattc tgcggtcctg tattggagaa      3720
     cgaaaactcc tgacggcgag gtcaagctct ctctcatcgt cgccaaggcg aaggtggcac      3780
     cgttgaagct aacgtcgatc ccgaggttgg agcttcaagc tgcagttatg ggcaccagac      3840
     tggcagactc agtcatagaa gagcacgaga ggaaacctga ctgcaaggtg ttctggaccg      3900
     acagtaagac agtactcacc tggatcagga cagggtcacg cacctacaaa ccatacgtgg      3960
     ctcatcggct tgctgctata gaagaaagta ccaaagttaa cgagtggcgc tgggttccga      4020
     cgaagctgaa cgtagcggac gacgcgacac gagacgtccc gctcaccttc gacaaggatc      4080
     acagatggta caagggaccc gacttcttgt acgaagaaga ggaccagtgg ccagtcgaga      4140
     cagatactaa gaagatcgaa gacacttctg gggaagagaa ggtgaaccac gtagcgaata      4200
     aaagagaact tagattaaca gaagggctac ccgaagcctc acgcttctct aactggcacc      4260
     ggcttcgata tactacagcg cgagttcttc tattcattga actctgcaga agaaataaag      4320
     aaagcgtaaa ttacagaagg actaagaaaa acaaagaaca ggatccaaac tggaataaga      4380
     tagcaagaaa aacgtcaagc actaatgaaa cacagaagaa aacaacaaca aagataaata      4440
     gaaaattcct tccagtctct gccgagaacc tcaagcaggc ggaggagttg ctgatgcgtg      4500
     cttctcaaga agagtcgttc gcagaagaaa tagccaacct aaggagtggg aaaccggtca      4560
     acaaggaaag cagactacat caactcagcg tcacgtgtgt ggatggtgcc ctccggctta      4620
     gaagtcgcat aaaagccgtc aaatacatgc cagaagactt caagagcccc atgataatag      4680
     acggagacca tcctatagtt aagacatgga tacgagcgat acaccaacag ctacatcacg      4740
     caggagtaga agcgacagtg aacgagtgta gacaacagta ctgggtgtta cgcctgcgcc      4800
     ctacaacgcg ctcagtactg cgacagtgtt tgttctgcag aatgaagaca gggactccgc      4860
     cacatccacg aacaggtgat ctaccacagt gtcgtttggc tcatcacaaa aggccattca      4920
     cctacactgg ggtggactac ttcggcccgc tatctgtaac agttggaaga acgcgacaga      4980
     aacgctacgt cgcgatattt acctgcctca ctacgcgagc catccatctc gaaattgcag      5040
     gctcactcag caccgactca gcagtgatgg cagtccgaag aatgatctct cgacgcggct      5100
     gccctacaga aatatggtcg gacaacggca ccaacctaaa gggagctgaa aaggaacttc      5160
     gacaacaaat agatgaagcg acggcggaag aagctgcaaa gagaaccatc gcttggcggt      5220
     tcatacctcc tggcgcaccg ttcatgggag gagcatggga acgaatggtc cggtcagtca      5280
     agacggcgct cgccgccact ctgcacgagc gacaccctac agaagaggtg ttatccacac      5340
     tactagccga ggtggagtac accgtgaaca gcaggccact gacccacgtt tcagtgagcc      5400
     ccgaagatcc agaagccctg acgccgaatc acttcctcct aggaggacag ggtcgagtac      5460
     cgctgcctgg aagtttcacc gacaaggacg tagcttcgag atccagctgg cgagcagccc      5520
     aaaggctcgc tgacttattc tggacgcgct gggtgagaga gtacttaccc gagcttcaac      5580
     accggcggga gccgcacgga cggggcccag ctgtgcaggt caacgacctc gtacaaatag      5640
     tcgacgccaa cctgccccgt aacgtgtggg tcagaggaag ggtcatcgac acgtaccccg      5700
     gcccagatgg agtcgtcaga gcagtggaca tccggacaaa aggaggagtt ctacgtcgac      5760
     cagtgaggaa gctggtgatc ctgcccctgc acgacgacgg acccgcacac ggaggagatg      5820
     caacatcgtc gcacggcggg agaga                                            5845
//
ID   BEL-4_TrNi-LTR repbase;    DNA;    INV; 848 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-4_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-848
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1039-1039 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 848 BP; 263 A; 161 C; 198 G; 226 T; 0 other;
     tgtgcgggac agcgtgaaca gtttaagaga aaaagtgtaa acaatgaaca gtatttgtga        60
     ttagtgttat atgattaggt ttaagtatag tttaagtcaa attagagtct gattagatta       120
     ttgtttgttt agtatactcc ggcctcctat tggaaaacat tccagtaaca gcgaccaata       180
     ggagagccgg aattaattaa agtttatatg aaaattgtga atatttgtaa gataggaata       240
     ttgtaaaaat aatatttttc tcatattata ggctaagtaa ggattcagaa aatgtatagt       300
     taacatacta ttgtaattca tttttaaata gaaaatagca ttttaagtaa acggctctcg       360
     gtgtggtaaa gtatcgtcgt acttaacctt aaggaaaaaa ccgcgcgcgg gccccgcccc       420
     cgctcttatt ggtcgaaaag cgagcgatct tattggtcgg ccaatgggag cgggggaatt       480
     tcggggcccg aatttgtata aaatgcggcc cacaccgaga gtcgacacat tcggcggcaa       540
     cacagcaaga agagcggacc aacaggaaga aataggaagc cctcgaagac ttcagcaaca       600
     gcgacgcctc ggatacaacg aaggagcccc gggacatcag cgaagcccta aaggacatca       660
     acggagccct acgaaatagt cgacgtaaac aaactgcgtt tgtttacgtt ttgtatcctc       720
     tgtttgagcg tcaataaatt gagtttggtg tttatacaag ggccttctca tttttcacca       780
     atccggcacc cccaatagtt gtgctcgcgc ggtgtctctt gctgtaaagt tggagcccgt       840
     gcgacaca                                                                848
//
ID   BEL-50_AA-I repbase;    DNA;    INV; 5156 BP.
XX
AC   supercont1.300;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_AA_;
KW   BEL-50_AA-LTR; BEL-50_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5156
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.300; Positions 1072095 1077250.
XX
CC   Positions [4212-4790] - Integrase core
CC   'ACAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..5129
FT                 /product="BEL-50_AA-I_1p"
FT                 /translation="MEPAELERLRAKREVMFAKIKWEFSVANALHVRNPSF
FT                 GEVCERRDKLTELATNFDAVQTTIEENTTNLMDVTSVFNYRTQFEEVYFKV
FT                 KDIYTEFLDANQDRVSWHSAGSETRNDLRDAIKALLETQQAMLDRRDLPPQ
FT                 QPASGGQVSNHEPQVKLPQLNIPVFRGERKAWNSFKDLFVSTIHTREDLKA
FT                 SVKMQYLLSYLDGEAKRMVSSFPITDANYNEAWETLVTHYDKKKYTVFALV
FT                 REFVDQPSVTNAAGLKKLVATSDDVIRQLKALGNEYETRDPWLIHLLLEKV
FT                 DRETRGLWAQKIIDEENPMFADFIEFLQKRCDALETCSAFSRKQGETAKKE
FT                 LPKFSASEKKIQAFHSSATQVSCAKCSKDHPTYHCDQFKAMDVSSRRELAL
FT                 TSKLCFNCLRSSHTAKKCQSKSVCRTPQCNQRHHTLLCQKEVKQQDNKQEV
FT                 HERSEPELYVPSISTNVAQAVAEKQGPFAFALLPTVVANIRGGDGKLHEVR
FT                 ILIDCGSQASLITSACVKRLGLRRRNASLEVTGVSGEAVGTTAGIVTLVIS
FT                 SRFDEETKLTTAAYVLGKLTATLPCQRFDVASMPYLKHLPLADPHFNQPGS
FT                 VDVILGSDVFLSILEAGQVNDTNGIPVAQRSIFGWMVAGRISKQWCTHTHH
FT                 SAIDLRQDFDIDRTLRLFWEDQEVRQAKQWTREEQRVVDHFNSTHTRADDG
FT                 RFIVRLPMDNSKQQLGESLTAAVKRLRAMERKFETDENFKQRYIDFMQEYQ
FT                 DLGHMDLIPEAEVQVEWTRSYYLPHHGVVKEDSSTTKLRVVFDASCATTSG
FT                 ASLNDLLLDAPNINSDIFDIMMDFRFYEVVFTADAVKMYRQILMHPADRDY
FT                 LRVVWRSSPDKPIQHFRLRTVTYGLKNSGFLAMAALKKAADDYEGIYPEAA
FT                 QRIKKSTYVDDLTSGARTTEEAICLIKEINEIVESAGFTLRKWSSNSTAVL
FT                 ESLPQTTTASQQIQFPDERDTVKALGIHWVPDKDVFTIKLERIHITRWAPN
FT                 YNNQIELHGFSDASEEAYAAVVYLRSVDYDGKIHVTLLAAKTKVAPVRQVS
FT                 LPRLELNAAELLAKLMKQIAESLKRFQIEQYAWTDSTIVLQWLSGHPRKWN
FT                 TYVANRTSSILEILPRKHWAHVSSRENPADCASRGISPTELVGHHLWWSGP
FT                 PWLVEDSATWDRTSPSDELDEITLEVRKRFQSLNVSISNAETTYVIEKHIL
FT                 DSRSTIGAACRQLACVKRFIYNMRSKSSSLYEKRSGAILPSELNEARLLLI
FT                 RLAQHEHYEEEAKSLAKGNEVHPKSKISSLYPFLDGSGTIRVGGRLQQSSF
FT                 PFEVKHPAILPKNHRVSRLLVEELHLQNCHAGPTLLTATINQKYWIQGCQH
FT                 LIKQVIQSCVKCCRQKAKTAQQLMGSLPAARVTACRPFSHVGVDYAGPILV
FT                 RCSNTRGERCSKGYIVVFVCLSSKAVHLEVAGDLSADTFLGAFKRMIARRG
FT                 YCNELWSDNGTNLVGANRQLTEIYEATRSHSKKTEPFFSNLGIRWRFIPPS
FT                 SPHQGGIWEAAVKSAKELLRPVVGNEKLTFEKLSTVLCQIEACLNSRPLYP
FT                 ISTSPDSYEALTPGHFLVGQPLNLLPEPDIGHLKANQLDNWEKVQRLTSEF
FT                 WSRWRNEYIATLQPRGKWRNRQDNIKPHQLVLVKNDNTPPTAWELARVVEV
FT                 HPDKQGLVRTVTLRRGKSEYQRPVQKLCPLPD"
XX
SQ   Sequence 5156 BP; 1395 A; 1245 C; 1364 G; 1152 T; 0 other;
     tagttttggt ccttcggaac cgcataatgg agccagccga gctggaaaga ttacgtgcca        60
     agcgagaggt tatgtttgcg aaaatcaagt gggagttttc cgtcgcgaac gcactccacg       120
     tccggaatcc atcgttcgga gaagtgtgtg aacgccggga caaactcacg gaacttgcaa       180
     caaactttga tgccgtgcaa actacgattg aggagaatac gacgaatctg atggatgtca       240
     cgtcggtgtt taattaccgc acacaattcg aagaagttta tttcaaagtg aaagacattt       300
     acactgagtt cctggacgca aatcaggacc gcgtttcgtg gcacagtgct ggaagcgaga       360
     cgcggaacga tttacgggat gcaatcaagg cccttttaga aacgcagcag gcgatgctcg       420
     accgccggga tctaccaccg cagcagccag catcgggtgg tcaggtatcg aatcatgagc       480
     cacaagtcaa gcttccgcaa ctcaacattc ccgtcttccg aggtgagcga aaagcgtgga       540
     attcgttcaa agatttgttt gtcagcacga tccacaccag ggaggatctg aaggcttccg       600
     tcaaaatgca gtatttgttg tcctacttgg acggagaagc aaagcgaatg gtaagctcgt       660
     tccccattac cgatgcaaat tacaacgagg catgggaaac acttgtgaca cactacgaca       720
     aaaagaaata cacagtgttt gccctagtgc gggagttcgt tgaccagcca tcagtcacta       780
     acgcggctgg attgaagaaa ctggtggcca cttctgatga cgtcatccga caactaaaag       840
     ctttgggcaa cgagtacgag acacgggatc cttggctcat ccatttgctg ctcgagaaag       900
     tggatcggga gacccgcgga ctgtgggcgc agaagataat cgacgaggaa aatcccatgt       960
     tcgcagattt catcgagttc ctgcagaaac gctgtgacgc tttggaaaca tgttcggcgt      1020
     tttcgaggaa gcaaggagaa actgcgaaaa aggagcttcc gaagttcagt gcaagcgaga      1080
     agaagattca agcgttccat tccagcgcga cgcaggtgtc gtgtgcgaag tgcagtaagg      1140
     accatccaac gtaccattgc gatcaattca aggccatgga tgtatcgtca cgtagggaat      1200
     tagcactgac gtcaaaactg tgcttcaatt gcctgcgttc atcacataca gcgaaaaagt      1260
     gtcagtcgaa atcggtgtgc cgtaccccac agtgcaacca gcggcaccac acactacttt      1320
     gccaaaagga agtcaagcag caagacaaca agcaagaagt tcatgaacgc tcagaaccgg      1380
     aattgtatgt tccatcaatc tccaccaatg tggcgcaggc ggttgcggaa aagcaaggac      1440
     cgtttgcatt tgcattgctg cctacggtgg tggcgaacat tcggggaggt gacgggaaac      1500
     tacatgaggt gagaattttg atcgactgtg gttcccaagc atctctcatc acgtcagcgt      1560
     gtgtcaagcg tcttgggttg aggcgccgta atgcatcttt ggaagtcacc ggtgtcagcg      1620
     gggaagcagt cggtaccaca gccggcattg tcacgctggt gatttcgtcg cgtttcgatg      1680
     aggaaaccaa acttactaca gctgcctatg tgctaggaaa gctcacggca accctgccgt      1740
     gccagcgttt cgacgtggca agcatgccgt acttgaagca tctaccactc gcagaccccc      1800
     acttcaacca accgggttca gtggacgtaa tactgggatc ggatgtcttc ctgtccatac      1860
     tggaggctgg tcaagtcaac gatacgaatg gtattcctgt agcacaacgt tctatctttg      1920
     ggtggatggt tgcaggaaga atctccaagc aatggtgtac gcatacacat cactcggcga      1980
     ttgatcttcg tcaggatttc gacatcgatc gcaccctgcg attattctgg gaggaccagg      2040
     aggtacgtca agcgaagcag tggacacgcg aagagcaaag ggtcgttgat catttcaact      2100
     cgactcacac acgtgcggat gatggtcgct ttatcgtccg attgccgatg gacaattcca      2160
     agcagcaatt gggggagtcg ctaaccgcag cggtcaagcg gctacgagcc atggaacgga      2220
     aattcgaaac cgacgagaac ttcaagcaaa gatatattga cttcatgcag gagtaccaag      2280
     atttgggcca catggatctg attccggaag cagaggtgca agtcgagtgg actagatcct      2340
     actacctgcc gcatcatggg gtcgtgaaag aagacagcag tacgaccaaa cttagagtgg      2400
     tattcgacgc ttcgtgtgcc accacttctg gggcgtcatt aaacgatttg ctgcttgatg      2460
     ctccgaatat caactccgac attttcgaca ttatgatgga cttcaggttc tacgaggtgg      2520
     tatttactgc ggatgcggta aagatgtatc ggcagatact gatgcatcct gccgatcgag      2580
     actatttacg ggtagtatgg agaagctcgc cggacaagcc gattcaacac tttcggcttc      2640
     gtacggtgac atatgggctc aagaattctg gattccttgc catggcggca ctcaagaagg      2700
     cagcggatga ctacgaaggc atatatcctg aagcagcaca gcgaatcaag aaaagtacct      2760
     acgtggacga ccttacatca ggagcgagga caaccgaaga agctatttgt ttaatcaagg      2820
     agatcaacga gattgtggag agcgcaggat tcacgcttcg caaatggagc tccaattcga      2880
     cagcggttct cgaatcgcta cctcaaacca cgacagcatc acaacaaata caatttccgg      2940
     atgagcgtga tacggtgaaa gctctgggga ttcactgggt tccggataag gatgtcttca      3000
     cgatcaagct ggagaggatc cacattacac gatgggcacc caactacaat aatcaaatcg      3060
     aactgcacgg tttctctgac gcttctgagg aagcctacgc ggcagtagtg tacctccgat      3120
     ccgtggacta cgatggaaag attcacgtta cattgttggc agcaaagacg aaagtcgctc      3180
     ctgtgcgaca ggtatctctc ccacggctcg aactcaatgc ggcagaacta ctagcgaagc      3240
     tgatgaagca aattgctgaa tctctcaagc gcttccagat agaacagtat gcttggacgg      3300
     attcgacgat agtgcttcag tggctctcag gacaccctcg taaatggaac acttacgtgg      3360
     ccaataggac atcatcgata ctggagattt tgccacgtaa acattgggcc cacgtttcat      3420
     cgagagaaaa tcccgccgac tgtgcttcac gtgggatttc tccaacagag ctcgtcggtc      3480
     atcacctgtg gtggtcaggt ccaccatggt tggtggaaga ttctgctacc tgggatcgca      3540
     ccagcccttc ggacgaattg gatgaaatta cattggaggt acgtaaacgt tttcaatcac      3600
     tgaatgtctc tattagcaac gcagaaacaa cgtacgtgat cgagaagcac atactcgaca      3660
     gccggtcgac catcggcgct gcatgccgac agttggcgtg tgtgaagcga ttcatctaca      3720
     acatgagatc gaagtcatcg tcactctatg aaaaacgttc tggtgctatc ctgccctccg      3780
     aattgaatga agcaagattg ctgctcatca gattagctca acatgaacac tacgaagaag      3840
     aagcaaaatc gttggcgaag ggaaacgaag ttcatccgaa gtcaaagatc agcagcttgt      3900
     acccgttctt ggacggcagc ggtacaatta gagtcggtgg acgtttgcag cagtcatcgt      3960
     ttcctttcga ggtgaagcat ccggcgatac tcccgaagaa tcatcgcgta tcgagattgc      4020
     tggttgaaga actacacttg cagaactgcc atgcgggtcc aacactcctg acagcaacaa      4080
     tcaaccaaaa gtattggatt caaggctgcc agcatctcat caagcaggtc atccaaagtt      4140
     gtgtcaaatg ctgccgacag aaagccaaga cagcacagca gttgatgggc agcctgccgg      4200
     cggcgcgagt gaccgcatgt cgacccttca gtcatgttgg agttgactat gccggtccga      4260
     ttcttgtgcg gtgcagtaat actcgtgggg aacgttgctc gaagggatat attgttgtat      4320
     ttgtttgcct ctcgagcaag gctgttcatc tggaggtagc aggtgatctt tcagcggata      4380
     cgttcttggg agcgttcaaa cgaatgattg ctcgccgagg atactgtaac gagttgtggt      4440
     cagataatgg gacgaaccta gtcggtgcca accggcagct gacggaaatc tacgaagcta      4500
     cgcggtccca tagcaagaaa accgaaccct ttttcagcaa tcttggcatt cgctggagat      4560
     tcattccgcc atccagtccg catcagggtg gcatttggga agcagctgtg aagagtgcaa      4620
     aggagctttt gagaccagtc gttgggaacg aaaagcttac gttcgagaag ttgtcaactg      4680
     tactgtgtca aatcgaagca tgcctgaatt cgaggccttt gtaccccatt tccacatcac      4740
     cggacagcta tgaagccctc acgccggggc atttcctggt agggcaacct ttgaacctat      4800
     tgcctgagcc ggacatcggt catctgaaag ccaaccaact ggataactgg gagaaagtgc      4860
     agagacttac atccgagttt tggagtcgtt ggcgcaatga gtatattgcc acactgcagc      4920
     cacgtggaaa gtggagaaat cgccaagaca acatcaagcc tcatcagctc gtattggtca      4980
     aaaatgataa tacgccgccg accgcctggg aattggcccg ggtagttgaa gttcatcctg      5040
     acaagcaagg cttggtacgc accgtaacac tccgccgagg aaaatcggaa taccaacgtc      5100
     cggtacagaa actgtgtccc cttccggatt aaggcttcgc ctcaaggcgg ggagga          5156
//
ID   BEL-50_AA-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   supercont1.300;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_AA_;
KW   BEL-50_AA-I; BEL-50_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-288
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.300; Positions 1071807 1072094.
XX
SQ   Sequence 288 BP; 72 A; 65 C; 63 G; 88 T; 0 other;
     tgtttgggga tttttgctga aatttgtacc actgtgcgac caacgcatct tctaacgtta        60
     ttgctgtgtc gggcaacact gtttgcacca tctacgaaga gaagaaaaat aattgaaacc       120
     acttgtattc gaacagaaga gtaataaaca cgtgaaagtt tgtccgtatt ttcaatgcgt       180
     gttccgccgg tagaaagatt ccgaccgtcc gaatcgtgtt ctcgggttac cgattgttgt       240
     ccaagttccg ccgcgacctc tccgctattc gctttcgtta ttgataca                    288
//
ID   BEL-50_AnFu-I repbase;    DNA;    INV; 5387 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5387
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 706-706 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..5339
FT                 /product="BEL-50_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MATETKKTQAKIATLRARAQMRATEEFMVGFTEVKSN
FT                 QVVERLANLESIWKAFEAAQSKLESLEEDEEQLADLFNQRNEFYNKYCEAK
FT                 GFLTSNRPCALPAPDEVEPGKIKHVANVRLPKLDLPTFDGNTTDWISFKDR
FT                 FVSMIDKAEDMPDVVKLQYLLSVLKGEVAKRFQHVQLTADGYSITWKALLD
FT                 RYDNKRILKREYFRALFSIPPMKNDTIEELRRVSDEFTRLTQGMSALSEAL
FT                 VHWDTPLCNLLFYKLDGKTLLAWEEYTSKDKEDVYVKLQEFLQGRLRILSA
FT                 TAQASTEAQKPSSSKLTSTKQQRGIACVSMAPTPVIRCYACSQQHYLHQCE
FT                 SFKGMQVAQREEVITSNKLCRNCFRIGHIAQRCMSKFKCHKCHQRHHTLLH
FT                 VDTAMQNPTSDNIVAATTAASGKTTVLLQTALVQVVDDNGRSFDARALLDS
FT                 GSMSNFISTALANRLSNRKRHASVSIVGIGQRENHIHEAMDVVVSSKTQRF
FT                 STKLNFLVIDSPTAQLPTIEVNTKEWRIEGLSLADPFFYKPGQIDLVIGGE
FT                 AFWAIHTNERISVGSDKPVFVNTRFGWTVAGTTPATTQNRHVSTNAAVSQD
FT                 TLETTIRRFWELDVLPSSSSVELDEETCEKFFSETTSRNKEGKFVVKLPKV
FT                 DTSRVSLGDSKSIAEKRFFNTERRLQRNPKMYEEYRKFLKEYEELGHMVVL
FT                 PEPVDDSMPHCYLPHHPVQKESSTTTKVRVVFDASCKTTSGYSLNDVLEVG
FT                 PTVQPDLFSVILHFRTHRVAISADIEKMYRQVMVHVDDQPLQRIVWRPTAA
FT                 EELRCYQLKTVTYGTACAPFLATRALRQIALNEMATNPIEAEAIKNDFYVD
FT                 DFLSGANDEESAATLQKNVTSLLRQYGFVIRKWSSNSKRVLDDIIEKDLAT
FT                 PRCHYLGTDAAITTLGLVWFPGRDQFSYNLKNVELPSTITKRTLLSSVAKI
FT                 FDPLGLVGPVVCMAKLLMQRAWTTIDSTTKKTIDWDANLPTRLQNDWKSFQ
FT                 RTIHLLEDLNIPRFIFGNEMLEGCEFHIFGDASERAYGSCCYIRVSSQSGF
FT                 TTRLLAAKSKLAPVNSHHSIAKLELCAALLSVQLLAKISTALRFNPTNIKY
FT                 WSDSTTVLHWLNASPCRWKTFVANRTTLILDATNIKQWRHVAGVDNPADYI
FT                 SRGVEPKDLLYAERWWNGPSWLSLPENQWPESHFVPSEDAENLEECRNTAV
FT                 LALAAVASTFCDELFAKYSSYTKLLRVFAYCCRLLVKFRNRKGAQLSSEFL
FT                 EDNRKWLSTAEVQFAEVNLCLLHQQQMFPDELHSLITGQPVTRSSQLRWIK
FT                 PILGKDGLIRIGGRLNLATLPPSTQNPIILSAKHPLTVMIVEACHRRQLHA
FT                 GPQLMLATLRQKFWIIGARNLVRSVYHRCVTCFKKKPTFISQTIGDLPSSR
FT                 VTPAPPFSISGVDYCGPFFVKFGTRKTIPRKVYIAIFICFATRAVHIEVVC
FT                 DLTTQAFIAALQRFISRRGKVKELNSDNGTTFKGAANLLHRLYQQLKTDAK
FT                 SRELLFDWCAVNEIVWKFIPPRTPHFGGLWEAAVKSAKQHLMKELGSTTVM
FT                 YEDFLTLCARVEMCLNSRPLTPIPNSPDDLDVLTPGHFITGSNFQLVPEVD
FT                 VKEVPDNRLTHWGRTQKHMQAIWARWYPEYLQQLQARATKVCKPPVQIEIG
FT                 RVVILKEDHLPPGQWPLAKIVAVHPGKDNIVRVVSLKTAHGKIITRPVVRI
FT                 ALLPMSE"
XX
SQ   Sequence 5387 BP; 1599 A; 1166 C; 1264 G; 1358 T; 0 other;
     tttggtcctt cgaaccggat ttctggacac acagactgct aatttgggtg tatcgaggtt        60
     taacctcaat cacgcgtgtc gtaagtgaag tgattttttt atccttctaa tacagtctgt       120
     attgtagaaa aatcgttact attcgctgac gcattgaaat ggccactgaa accaagaaga       180
     cccaagcgaa gattgcgact cttcgtgccc gtgctcagat gagagccaca gaagaattca       240
     tggttggttt tacggaagtt aaaagcaacc aagtggtaga gaggttagcg aatttggagt       300
     cgatctggaa ggcgtttgaa gcggcccagt ccaaactaga gtcccttgag gaagatgaag       360
     agcagctggc cgatttgttc aaccagcgca atgagttcta caataagtat tgcgaagcca       420
     agggattcct aacctcaaat cgaccatgtg ctctgcctgc tccggatgaa gtagagccgg       480
     gaaagattaa acatgtggca aacgtgcgac tgcctaagtt ggatttacca acattcgatg       540
     gtaacaccac agattggatc agcttcaagg accgatttgt gtcaatgatt gacaaggctg       600
     aagacatgcc tgatgttgtg aaactgcagt acctgttatc agtgctgaag ggtgaagtgg       660
     cgaaacgatt ccagcatgtg cagcttacgg cagatggtta cagcatcacg tggaaggcac       720
     tgctagatcg atatgataac aaaaggatcc ttaagcgtga atatttccgg gcgctgtttt       780
     ctatcccacc gatgaagaat gatacgattg aagagcttcg acgagtgtct gacgaattta       840
     ctcgactaac tcaaggaatg agtgcgttaa gtgaggcttt agttcattgg gatacaccgt       900
     tgtgcaatct acttttttat aagttagatg gtaaaacctt gttggcttgg gaggagtata       960
     ccagcaagga caaggaagac gtgtatgtca agctgcaaga atttcttcaa ggtcgattga      1020
     gaattcttag tgctacagct caagcatcaa cagaagcaca aaaaccaagt tcgagtaaac      1080
     taaccagcac gaaacagcaa agaggcatcg catgtgtaag catggcacca actcccgtga      1140
     tacggtgtta tgcttgttca caacagcact atttgcatca gtgtgaatcg tttaagggga      1200
     tgcaagtggc acaacgagag gaagtcatca catcgaacaa gctatgccgg aactgtttcc      1260
     gaattggaca catcgcccaa cgatgtatgt cgaaattcaa atgccacaag tgtcatcaac      1320
     gacatcacac attgttacat gtagacacag cgatgcagaa tccaacatca gacaacattg      1380
     tagccgcaac tactgccgca tcgggaaaga cgaccgtcct attacaaaca gcattagtgc      1440
     aggttgtgga tgacaatggc agatcgtttg atgcaagagc gctgttagac tctggatcga      1500
     tgtccaactt tatctcaacg gctctagcaa atcgtcttag taatcgcaaa cgtcatgcta      1560
     gcgtatctat tgtaggaatt ggacaacgag aaaaccacat acatgaagcg atggatgtag      1620
     tcgtgtcgtc gaagactcag aggtttagca caaaactcaa cttccttgtc atagattctc      1680
     caacagcaca acttccaaca attgaagtaa acaccaagga atggagaata gaaggactat      1740
     cactagccga tccatttttc tacaaaccag gtcagattga tctagtaatt ggcggagaag      1800
     cattttgggc cattcacaca aacgagcgaa ttagtgttgg atcggacaag ccggtatttg      1860
     tcaacactag atttggatgg acagttgctg gaacgacccc agctacaact cagaatcgtc      1920
     acgtgtcaac aaacgcagca gttagtcagg acacgttaga aacaaccatc cgacgattct      1980
     gggagttaga tgtgctacca tcctcatcat cagtcgagtt agacgaagag acatgcgaga      2040
     aattcttctc cgaaacgact tctcgcaata aggaaggtaa attcgtagtc aagttgccga      2100
     aggtggatac atcgagagta agtttaggcg attcaaagtc tatagcggag aagagatttt      2160
     tcaacaccga acgaagacta caaagaaacc cgaaaatgta cgaagaatat cgaaagttct      2220
     tgaaggaata cgaagagttg ggacatatgg tcgtgttacc agaaccagtg gatgatagca      2280
     tgccccattg ctatctaccg catcatccag tgcagaagga gtcaagcaca acgacgaaag      2340
     taagggtagt atttgacgct tcgtgtaaaa ctacatctgg ctactccctg aatgatgtac      2400
     tcgaagttgg tccaacagtt cagcctgatc ttttttcagt gatcctacat tttagaacgc      2460
     atcgagtggc aattagcgcg gatatcgaaa aaatgtatcg ccaggtcatg gtacatgttg      2520
     atgatcaacc gttacaacga attgtatggc gaccaacagc tgcagaagag ttaagatgtt      2580
     accagctaaa aaccgtgacc tacggaacag cctgtgctcc atttttagca accagagcat      2640
     taaggcagat cgcactaaac gaaatggcaa ccaacccgat cgaagcagaa gccataaaaa      2700
     acgattttta tgtcgatgat tttctctctg gtgctaatga tgaggagtct gctgctacat      2760
     tgcagaaaaa cgtgactagc ttattgcggc agtatggttt tgtgataaga aaatggtctt      2820
     cgaattcgaa acgcgtactg gatgacatta tcgagaagga tttagccacg cctcgctgtc      2880
     actacctggg aactgatgcc gccatcacta ctttgggatt agtttggttt ccaggaaggg      2940
     atcagttcag ttacaattta aagaacgtcg aattgccatc aactattacg aagcgtacgt      3000
     tgttatcatc tgttgcaaaa atatttgatc ctttgggact tgtaggacct gtcgtatgca      3060
     tggcgaaact actaatgcaa agggcttgga caacaattga ctcgacaacg aagaaaacca      3120
     tcgattggga cgcgaatcta ccaacgaggc tccaaaacga ttggaaatcc ttccaacgaa      3180
     cgattcatct gttagaagat cttaacattc cacgattcat ttttggcaac gaaatgttag      3240
     aaggttgtga atttcacata tttggagatg cttccgaacg tgcttacggt tcctgttgct      3300
     acatacgcgt cagttcgcag tcaggtttca ctactcgtct actagcggca aagtccaagt      3360
     tagctccggt aaactctcat cattcgatcg ctaagttaga actatgtgct gcattgttga      3420
     gcgttcaact tttagccaag atttcgacag cacttagatt caaccccacc aacattaagt      3480
     actggagcga ttcaaccaca gtcctgcatt ggttaaacgc atcgccgtgt agatggaaga      3540
     cgttcgtggc aaatcgtact actctaatcc tagacgccac gaacataaaa caatggagac      3600
     atgtagcagg agtcgataat ccggcagatt atatttctcg aggtgtagaa ccaaaggatc      3660
     tgctctatgc tgaaagatgg tggaatggac catcttggct ctcgctacca gaaaatcaat      3720
     ggccagaaag tcatttcgtc ccttcagaag atgctgaaaa tttagaagag tgtcgtaaca      3780
     ctgccgtgtt ggcattagca gcggttgcaa gcaccttttg cgatgaattg tttgcaaaat      3840
     attcatcata tactaaacta cttcgtgtct tcgcatactg ttgtcgactg ttggtgaagt      3900
     tcagaaatcg taagggagcg cagctttcta gtgaattctt ggaggacaat cggaagtggt      3960
     tgtcaacggc tgaggtacaa tttgcagaag taaacttatg tttactacac caacaacaaa      4020
     tgtttccgga cgaattacat tcgctgatta ctgggcagcc tgttacacga tcatcgcagc      4080
     tgagatggat caaaccaata ctcggcaagg atggactaat tcgtattggt ggccgtctga      4140
     atctagcaac tcttccgcct tcgactcaga atcctataat cttgtccgca aaacatccat      4200
     tgacagtcat gatcgttgaa gcatgtcaca gacgacaact acacgctggt ccgcaactca      4260
     tgcttgctac gttgaggcag aagttttgga ttattggcgc aagaaacctg gttaggtcgg      4320
     tttatcatcg atgtgttacg tgttttaaga agaaacctac cttcatcagt caaacaattg      4380
     gtgacttgcc gagcagtaga gtaactccag cgcctccatt ctctatttcc ggagtggatt      4440
     attgcgggcc cttctttgtc aagtttggga ctaggaaaac cataccacga aaggtataca      4500
     tagccatttt catatgcttt gcaacgcgtg cggtacatat cgaagtagta tgcgacttaa      4560
     ccacacaagc atttatcgcc gcgctgcaac gtttcatttc acgtcgcgga aaggttaagg      4620
     agttgaattc tgataatggc acaacattca aaggagcggc gaatcttctt catcggttgt      4680
     atcaacaatt gaaaactgat gccaaatcac gcgagctact gttcgactgg tgtgctgtga      4740
     acgagatagt atggaagttt attccgccgc gtacccctca ttttggcgga ttgtgggaag      4800
     ccgcggtgaa atcagccaag caacatctca tgaaggagct agggtcgacc acagtgatgt      4860
     atgaagattt tctaacgtta tgtgcgcggg ttgaaatgtg ccttaactcg cgaccactca      4920
     cgcccattcc gaattcgcca gatgatctcg acgtgttaac acctggccat ttcatcacgg      4980
     gatcaaactt ccaattagtt ccggaagtag acgtcaagga ggttccagac aatcggttaa      5040
     ctcactgggg gcgtacgcaa aagcacatgc aagctatctg ggcacggtgg tacccggaat      5100
     atctccaaca actccaagcc agggccacta aggtgtgcaa gccgccggtg caaatcgaga      5160
     taggacgcgt agtaatttta aaagaagatc acctcccacc aggccagtgg ccactggcca      5220
     agatcgttgc agtgcacccc ggtaaagaca acatagtgcg ggtggtgtca ttaaagacgg      5280
     cacacggaaa gatcataacc cgcccagttg ttagaatagc tttgctcccg atgtctgagt      5340
     agaaaatatg atattaaaat aacgaggtta tttcaaggtg gccggga                    5387
//
ID   BEL-50_AnFu-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   31-DEC-2021 (Rel. 27.02, Created)
DT   31-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-280
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 752-752 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 280 BP; 113 A; 46 C; 48 G; 73 T; 0 other;
     tgttagagca agacaagttg cgatacaagt gttatgcaac ttgttgcata atacttgtgt        60
     caactaagaa cgtaagcaaa atatcaaaat gttaagtggg aaagatatat tttttttgac       120
     aattacacaa ttacacaatt acacagttac acattacaac aagcgaagag aacacgtgaa       180
     aataaaatct acagtacaac ggcacaaagg aagcagtatt tgctgttttt ttagcaaatt       240
     agaaatacca gaaaatccga agcagtatcc tgcgtcaaca                             280
//
ID   BEL-50_CQ-I repbase;    DNA;    INV; 5932 BP.
XX
AC   AAWU01014601;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_CQ_;
KW   BEL-50_CQ-LTR; BEL-50_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5932
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 253-253 (2011).
XX
DR   GenBank; AAWU01014601; Positions   28225   22294.
XX
CC   Positions [4940-5521] - Integrase core
CC   'CTATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           464..5905
FT                 /product="BEL-50_CQ-I_1p"
FT                 /translation="MWRSFLGLNTEPKVEPEEGEESEQEASVQKKPEPEDR
FT                 KPVVVQLPLTPKQRHTESKRKMADEEVQALLNRRGHVKGKLTRVRTVLGQP
FT                 GIPAARIVVCKANAEKYYGEYNSLNNNIMDARLSEEQRTENAERFLDFEQL
FT                 YDEVLEKIVELTAPPNRAQAVVPAGQAGQQVIVQQTPLRAPIPTFDGQYEN
FT                 WPKFKSMFLELMKNSPDSDAIKLHYLDKSLVGAATGMIDTKTLQDNNYAHA
FT                 WEILEDRYENRRLIIDIHINGILQLKRMAKKSSKELRELYEECSRHVENLR
FT                 YHKQELLGVSELFVVNILSSCLDRETREQWEATVKKGELPKYAQTIEFLKQ
FT                 RCAILERCELAAPASYAVRSAVPKAVQSSKPSAKITSAAATSNEAECDLCD
FT                 GSHANYKCGSFRGMSVAERWSKVRDARLCYNCLRKGHRVGQCPSDRSCKCG
FT                 EKHHSLLHQEKNQQQTKPKPEAAPVSAKAPSAVSSASVKAGPSDTGAPEVN
FT                 DDNEQQATSCFSSGALKSPQQVLLQTAIINVADKAGRFHPCRTLLDSGSQA
FT                 HILSEAMARTLGLTFEKCNVTVVGANAVKTQAKKGVNLTFSSRYCEFQDNI
FT                 SCLISDKPTGRIPSARIETAAWHIPSDVFLADPKFSEPHEIDLVMASNYVW
FT                 DLLRTDRVKLANGTVTLRETDLGWIVTGVYDPFQQLSCQVVHSNITLKDQL
FT                 NNAIEKFWLVEELADKQLQTNEEQEVEEHFRGTHGRDGSGRFVVQLPFKDE
FT                 VLELGDNRVQALRRFNLLERRLSRNPELREQYTAFVEEYEALGHCKEISEH
FT                 QDSPEVRKYYLPHHAVLKPSSSSTKLRVVFDASAKAGKYSLNDVLKVGPTV
FT                 QNDLFSIVLRFRRHPVAFTADVVKMYRQVRVHPSDTPYQRIFWRKDPNERL
FT                 RVLELNTVTYGTASAPFLATRCLVEQAESAKGRFPAAAKIVIEDMYVDDML
FT                 SGASNEKEAVKLVLEVKKILEEGGFPVKKWCSNSEQVLKCVPEEDREKPKP
FT                 IEEYSANEAIKALGVLWDPREDEFRFVNCLEECDDKPVSKAKVFSDILKVF
FT                 DPLGFVAPVIVLAKVFMQKLWASKMDWATELNEELLCEWFEIRESLTALND
FT                 IRVPRCVVVPNTVLHELHGFADASTVAYGANVYLRCIRGNGSAEANLLCAK
FT                 SRVAPLKKLSVPNLELCAALLLARLVVKVIETLDLKLSAIKLYSDSQIVLA
FT                 WLKKDPNLLETFVRNRVIQIFNLTGKFRWNYVRSADNPADIVSRGMSPKLL
FT                 SRCPKWWKSLLPLTSAAYVPEEPPELEDDELPGLVAIVYKVTVVEEMPVFK
FT                 RFGEFRKLQRVICYVRRFVQNCRNKKSGQPKTTCAYVTVPETRAALKSIIW
FT                 SIQMTVLPDEFYLAKTEQTSSQLASLAPIVDEDGLLRVGGRLEHSSLPYEA
FT                 KHPVILPRHHVTTLLIRALHVENLHVGPSGLLAIVRQQYWPLKARNVVRDV
FT                 TRKCLQCFKANPRRIEQFMGQLPAERVNVAAPFEYTGVDYAGPVTVKQGKY
FT                 RPKLTKAYIAVFVCLVTKNIHLELVSDLTTEAFLAALDRFVNRRGMVRKIF
FT                 SDNATNFVGASRSLREMHELFKQDLLKRGIQDLLVPKAIEWSFIPPRAPNF
FT                 GGLWEAGVKSVKTHLKRTLQNAVLTFEEFATILTHVEAVLNSRPLFSLSDS
FT                 PGDPLPITPAHLQLGRPLRPVAKPSRSGVADNRLNRWEYLDKLREDFWGRW
FT                 SREYLTSLQSRAKWTKKSHNLQPGMLVLLVEDNLPSQTWKVGIIVETYPGM
FT                 DALVRVVDVKTGSGAVFKRSVSKLAPLPTVDNDRLLERFGASD"
XX
SQ   Sequence 5932 BP; 1393 A; 1582 C; 1826 G; 1131 T; 0 other;
     tttggtcctt acgaaccgga tagacagtgc ctatcggtaa gtccgtcgga atcggagaat        60
     tccggagtgt cgcgaggagt gaagtgtccg gaagtcgctt atcccggagg gcgtttcacg       120
     tggcccagac agcgtgaaag tgacgcggtt gtgtggaggt tccagcaacg cgcaaacagt       180
     gcaccggaag aggtcggatt ggccgccggt agtgcgaagt gtggacagtg gtcgcgattg       240
     gccaccgaag cagaacattg cgtggacggt agcgttgcta ctcgagcaga aaagtgcgtg       300
     gaaggtggtc cgaaaaaacc actggagcaa aaagtgaaaa gtgttcggtg aaaagagcgt       360
     gggccgccat cttgaaaacg ccagcaagag agtgttcggc gagaaaagag tgtgcgccgc       420
     catcttggaa cccaaaaaag tgaagtgagc tgcatcccgg cggatgtggc gtagtttcct       480
     ggggttgaac accgagccga aagtagaacc ggaagaaggc gaggaatctg agcaagaagc       540
     cagtgttcag aagaaaccgg aaccggaaga ccgtaagccc gtggtggttc aacttccgct       600
     gactccgaag caacggcaca cggagagcaa gcggaaaatg gcggacgaag aagtgcaggc       660
     gttgctgaac aggcgcggac atgtgaaggg caagttgacg cgggtcagga ctgtcctcgg       720
     ccagcctgga atcccagcag cgcggatcgt agtctgcaag gcgaacgctg aaaagtacta       780
     cggtgagtac aacagcctta acaacaatat catggacgca aggttgtcgg aagagcagag       840
     gaccgagaac gccgaacggt tcttggactt cgagcagctc tacgacgagg tgctggagaa       900
     gatcgttgag ctcacagcac caccgaatcg tgcccaagcg gtcgtccctg ccggacaggc       960
     tggtcagcag gtgattgtcc agcagacgcc cttgcgtgca ccgattccaa cgtttgacgg      1020
     ccagtacgag aactggccga agttcaagtc gatgttcctg gagctgatga agaactcgcc      1080
     agactcggac gccatcaagc tgcactactt ggacaagtct ctggtgggtg cagcgacggg      1140
     catgatcgac acgaagacgc ttcaggacaa caactatgcg cacgcgtggg agatcctcga      1200
     ggaccggtac gagaaccgac gcctgatcat cgacatccac atcaacggga tcttgcagct      1260
     aaaaaggatg gcgaagaagt catcaaagga gctgcgagag ctgtacgagg aatgttcgag      1320
     acacgttgag aacttacggt accacaagca ggagctgctg ggtgtatcgg agttgttcgt      1380
     cgtcaacatt ctgtcgtctt gcttggatcg tgagacacgc gagcagtggg aagctaccgt      1440
     caagaagggt gaactcccga agtatgcgca gacgatcgaa ttcttgaagc agcggtgcgc      1500
     catcctggaa cggtgcgagt tagctgcccc tgcgtcgtat gcggtccggt cggcagttcc      1560
     caaggcggtg cagtcctcga agccatcggc gaagatcacc tcggcagccg cgacatccaa      1620
     cgaggccgag tgcgatctgt gtgacgggtc tcacgcgaac tacaagtgtg gctcgtttcg      1680
     cggcatgagt gttgcggaga gatggtcgaa ggtgcgtgac gcgaggctgt gctacaactg      1740
     cttgcgcaag ggtcaccgag ttggacagtg tccgtcggat cgatcctgta agtgcggtga      1800
     gaagcaccac agcttgttgc accaggagaa gaaccagcag caaaccaagc cgaagccaga      1860
     agcggctccg gtatcagcga aggcgccgtc ggcagtgtca tccgccagcg tgaaggctgg      1920
     tcccagcgac acgggtgcgc cggaagtgaa cgacgacaac gagcagcagg caacctcgtg      1980
     cttcagcagc ggagcgctga agtcaccgca gcaggttctg ctgcagacag cgatcatcaa      2040
     cgtggcggac aaggccggca ggttccatcc gtgtcgaacg ttgttggatt ccggttccca      2100
     ggcgcacatt ttgtcggagg cgatggcacg aaccctcggt ctaaccttcg aaaagtgcaa      2160
     cgtgacggtc gttggagcca acgcagtgaa gacgcaagca aagaagggag tcaaccttac      2220
     cttctcgtcg aggtactgtg agttccaaga caacatctcg tgcctgattt cggacaagcc      2280
     aacgggacgg atcccgtcgg caagaatcga gacagctgct tggcacatcc cgagtgacgt      2340
     gttcctggca gacccgaagt tcagcgagcc gcacgagatt gacctggtca tggcgtcgaa      2400
     ctacgtgtgg gacttgctgc gaacggatcg agttaaactg gcgaacggca ccgtgactct      2460
     gcgtgaaacc gatctgggct ggatcgtgac cggcgtgtac gacccgttcc agcagctgag      2520
     ttgccaagtc gtccactcga acattacgct gaaggatcag ctgaacaacg ccatcgagaa      2580
     gttctggctg gttgaagaac tagcagacaa gcaacttcaa accaacgaag aacaggaagt      2640
     ggaagagcac tttcgtggca cccacggccg tgacggaagt ggtcgcttcg tcgtccagtt      2700
     gccgttcaag gacgaggttc ttgagctggg cgacaaccga gtccaggcgt tgaggagatt      2760
     caacctgctg gagcgccgtc tgtcgcgcaa cccggaactc cgagagcagt acacggcgtt      2820
     cgtcgaggag tacgaggcgc tgggtcactg caaggagatt tctgagcatc aagattcacc      2880
     agaagtgcgt aagtactacc tgccgcacca cgctgtgctc aaaccgtcca gttcgtctac      2940
     gaagctgcgg gtggttttcg acgccagcgc caaggccggc aagtactccc tgaacgatgt      3000
     gttgaaggtg ggaccgaccg tccagaatga cctgttctcc atcgttctgc ggttccgtcg      3060
     ccatccggtc gcattcactg ccgacgtggt gaagatgtat cggcaggtgc gtgtgcatcc      3120
     gagcgatacg ccgtaccagc gaatcttctg gaggaaggac ccgaacgagc gcttgcgagt      3180
     gcttgagctg aacaccgtga cctacggaac ggcgagcgcc ccgttcctcg caacgcggtg      3240
     tctggtggag caggcggagt cggcgaaagg ccggttccca gcagccgcca agatcgtgat      3300
     cgaggacatg tatgtcgacg acatgctgtc cggagccagc aacgagaagg aagcagtgaa      3360
     acttgtgctg gaagtgaaga agatcctgga agagggaggt ttcccagtga aaaagtggtg      3420
     ctctaactca gagcaagtgc tgaagtgtgt gcctgaagaa gatcgggaga agccgaaacc      3480
     gatcgaagag tacagtgcga acgaagccat caaggctctg ggtgtcctgt gggacccacg      3540
     cgaggatgag tttcgttttg tgaactgttt ggaagagtgc gacgacaaac cagtttcgaa      3600
     ggcgaaagtg ttttcggaca ttctgaaagt gtttgacccg ctgggcttcg tagccccagt      3660
     catcgtgctg gccaaagtgt ttatgcagaa gttgtgggcc agcaagatgg actgggctac      3720
     cgaactaaac gaagagcttt tgtgtgagtg gttcgagatt cgagagtctc taacagcgct      3780
     gaacgacatt cgtgtgccac gatgcgtcgt ggtgcccaac acggttctgc acgagctgca      3840
     cggattcgct gacgcgtcga ccgttgccta cggggctaac gtctacctgc gctgcatccg      3900
     cgggaatggg tcggccgagg ccaacctgtt gtgcgcgaaa tcccgagtgg ctccgctaaa      3960
     gaagctgtcc gtgccgaacc tggagctgtg tgcagcgctg ttgcttgcac ggctcgtcgt      4020
     gaaggtcatc gaaacgctgg atctgaagct gtccgctatc aagctgtatt cggacagcca      4080
     gattgtgctc gcatggctga agaaggatcc gaatctcctg gagaccttcg tgcgtaaccg      4140
     cgtcatccag atcttcaacc tcacaggtaa gttccgatgg aattacgtga ggtcagccga      4200
     caatccggca gacatcgtct ctcgagggat gagtcccaaa ctcttgagtc ggtgtccgaa      4260
     gtggtggaag agtcttctac cgctgacgag cgctgcctac gttcctgaag aaccccccga      4320
     actcgaggac gacgagctgc cagggctggt agccatcgtc tacaaagtca ccgtcgtcga      4380
     ggagatgccg gtgtttaaac ggttcggcga gttccggaaa ctccagcgcg tgatctgcta      4440
     cgtgcgcaga ttcgtccaga actgcaggaa caagaagtct ggacaaccaa agacgacgtg      4500
     cgcctacgtg acagttcctg aaacgagagc ggcgttaaag tccatcatct ggtcgatcca      4560
     aatgacagtc ttaccagatg agttttatct tgcgaagacc gaacaaacat ccagccagct      4620
     cgcgagcctg gcaccaatcg tcgacgagga cggtctgctg agagtcggtg gacgtctgga      4680
     acattcgagc ctcccgtacg aggccaagca tcccgtgatt ctgccccgtc atcacgtgac      4740
     tacgttgctg atccgagcgc tgcatgtgga gaacctgcat gtcggcccct ccggactcct      4800
     ggccatcgtt cgacagcagt actggccgct gaaggcgcgc aacgtagtgc gcgacgtaac      4860
     tcgcaagtgc ctgcagtgct tcaaggccaa cccacgcagg atcgagcagt tcatgggaca      4920
     gcttccggcg gaacgagtga atgttgcagc ccccttcgag tacaccggcg tggactacgc      4980
     tggacctgtg acggtgaaac aaggcaagta cagacccaaa cttaccaaag cctacatcgc      5040
     cgtgttcgtc tgtctggtca ccaagaacat ccacctggaa ttggtgtcag acttgacaac      5100
     cgaggccttc ttggccgccc tggatcgctt cgtcaaccga cgaggcatgg tgcgcaagat      5160
     cttctctgac aacgcgacga atttcgtcgg ggcgtcacga tctttgcgcg aaatgcacga      5220
     gctcttcaag caggaccttc tgaagcgcgg aatccaagat ttgctcgtgc ccaaggccat      5280
     cgagtggagc ttcatcccgc ccagggctcc caacttcggc ggattgtggg aggcgggtgt      5340
     gaagagcgtc aagacacacc tgaaacgaac gctgcagaac gcggtgctta ccttcgaaga      5400
     atttgctacc atcttgacgc acgttgaagc ggtcttgaac tctcggccgc tcttcagctt      5460
     gtcggacagc cccggagatc cccttccgat aactccggcg catcttcaac tcggcaggcc      5520
     gctgcgtcct gtcgccaagc cctcccgtag cggtgtcgcg gacaaccgtc tgaaccgctg      5580
     ggagtacctg gacaagcttc gtgaggactt ctggggccgc tggtccagag agtacctgac      5640
     aagtctgcag agccgtgcga agtggaccaa gaaatcgcac aatctgcagc ccggaatgct      5700
     ggtcctcctc gtcgaggaca accttccgtc gcagacctgg aaggtcggca tcatcgtcga      5760
     gacttacccc ggaatggacg cgctggtgcg tgtcgtggac gtgaaaaccg gttctggagc      5820
     agtcttcaag cggtcggtat ccaaactggc acccttgccg accgtggaca acgaccggct      5880
     tctggagcgc ttcggtgctt cagattagct ggaatgcagc cgcgggggag aa              5932
//
ID   BEL-50_CQ-LTR repbase;    DNA;    INV; 385 BP.
XX
AC   AAWU01014601;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_CQ_;
KW   BEL-50_CQ-I; BEL-50_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-385
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 254-254 (2011).
XX
DR   GenBank; AAWU01014601; Positions   22293   21909.
XX
SQ   Sequence 385 BP; 112 A; 92 C; 102 G; 79 T; 0 other;
     tgtcagctat gcttccgtct tccgagaatt cttgatgaca aatgaaaacc cagctcgatc        60
     ggcaacactg gttgctgcga tcgacacacc caacgcgaca cccctcgtcg ccgcctgcga       120
     tgacagcaag gaacgatcga gaaggtggga attggcgcgc aacggatgcg cgcgcaatcg       180
     agccgaagga ggagagaaag agagagagaa gtggagattt ttcactccag ttcgcgacgc       240
     gttcaagtaa agacgtgttt tgtacatagt gatcagaata aaggttttgt taggaaaagt       300
     gaattccgca aagtgttttg atcacccgga gaaaatccct aatacactcc acccgaagat       360
     ccagttggga gatttggccc caaca                                             385
//
ID   BEL-50_DTa-I repbase;    DNA;    INV; 6318 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   13-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6318
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~99% identity to each other.
XX
SQ   Sequence 6318 BP; 1791 A; 1305 C; 1427 G; 1795 T; 0 other;
     ttggcgcccg aacagggact acggctatag cattttcgtg gaaattcgcg tcggaaaatt        60
     gatcatataa agtgcatttt cgtcgtttcg gcacgtattc aatttttcct tttgcgaaca       120
     taacctagct ggcgggattc gccgcagcag ttggagtcga cgttgcccac tccagcaact       180
     gttttaaatt tttgacactc tgtaaattgg aaaaccaatt aaaaagcaac acatctaaac       240
     caaataaata aaagtgaact gcctttgaca aaaatattgc gtgtgaaaaa tgtttgtgaa       300
     attctggaaa atttggtatg ctgcataggc catggcacat ttttttgcag tgcaaaaagt       360
     acagctataa ctgaagcggc tatgtgcagc gatattgtcg attccctttt gtgcagtaca       420
     gtacccagtt gcagagcagt tatttttgag caatacatac tgttgcagtg cctctcaaac       480
     agtacataac attttgtagg caccggcgaa aagggcagtg aactttagcg cttcgtacat       540
     acatatacac ccctacatat gtatgtaatt gtgcatcgca atataaactt ggttacattg       600
     gaaattttcg gtctaatttt tggaaatgat tgacttcgga gctgtgtgtt ggcatcgtta       660
     acccatatac gatccacata cagacctttg gccgcataac ttaaaacatt ttgtgcactt       720
     ttgcggtgtt tcgtgggcac ctttaacccg tatgggaacc atataaataa tttggacagt       780
     gtatttgtca aattaataga acgttttgtg cattttggcg gtgttgtgtg ggcatcttta       840
     acccgtatgg gatccacaaa aaataattga cacatttatt tgtcgaataa aattcaatta       900
     ttattacgtt ttggcgctgc gtgttgaatt tattaaccct ttatataacc caaataaaat       960
     attttcggct tcttttaata tttgggtaac cgtttaaaat tcattacatc ggcatcaaca      1020
     ttacgaaaga gattaattta acccttgtat tgagttgaaa taaattcgaa taattgtcaa      1080
     aatgagtgat aaagaggagg aagttgttgc aaaggaagtt aattccaaag caaccaaaaa      1140
     aatgctgtcg acaatgcaaa aacacgaaag ggttatgagt gacattaggc gaatgaaaac      1200
     ggctttcgag gaaaaaacta tttctttcga taaatttcaa attgaatacc gaatgcagct      1260
     gcttgaaact tattgcaaaa aattgatgga tatccaggca gaaatcgatg ttctttaccc      1320
     aagtaatgat ttaagagcgt cggttgagga tatgtgtatt attacaaagg ctttatatcg      1380
     gtccgcaata aaagagaacg attcacagaa acttagtcaa ggggatagca gtgttcatcg      1440
     tcatttgtcc cagttaccta aaatgagcct tcccaagttt agtggaaagc atgctgagtt      1500
     taaaaacttt ataagtctgt ttgagagttt ggtccataat gattcatctt taacaaacgt      1560
     tgaaaaattc aaccatttgc gttcgtgtct cactgatgat gcgttgggaa ctgtgaaggc      1620
     gtttcaaatt tcggacagta attacgaaaa ggcgttagac agtttgaaaa atgtttatga      1680
     caataaatgt ttgatatttt tcgatacaat ttcgcaacta tttgacattc cccatgtagt      1740
     aaaaccctca gcttcgggct tgaggtctct tatcgatgag atgtcggctc tttatgcatc      1800
     attgcagtca ttgggcagtg aaaaggagat taataatgca atatttattc atatagcaat      1860
     gtccaaggta gataatgcaa caaaatctcg ttttgaagaa cagctcgact ataataattt      1920
     accgacatgg tccgattgtg cgattcagtt aagtcggcga tatcaatatc tatgtgctga      1980
     ggaatcaacc aaaagtaagg gaaagcctac ccaaggttct aataaagggt attcaaagtc      2040
     gtctttttca tgcacaaaaa cagatcgccg gactgagtca aaatgtcgat attgctcagc      2100
     gacgaatcat actttgggca agtgtcaagc tttcagtgcc ctttcagtga ctcagcgttt      2160
     cgattttgcc aaacacaatc gtttgtgcat caattgtcta aatgaaggac actcagtaaa      2220
     gaaatgtaaa gctgcaaaat gtggagtttg ctccaagccc catcatactc ttcttcacag      2280
     atacgggtta gaacaccatc cagctagttc ggcgtcaacg cctcaagtgg catcacggac      2340
     aacgtcagta gcttcagacc atcctaatca agcgtattca agtcatgttg ctagtagtga      2400
     tcacgttatt cttgctactg cagtagtaaa ggtacgggat agattcggac agttccaatt      2460
     agcacgagct ttgttagatt ctggttcgca aataaacttc atggccgaag atttagcaca      2520
     gcgtttacgg ttaaggagag aagattcgtg cttaaatatt accacggtgg ggaagaatga      2580
     ttcggtagta cgacacaaag tccacacgtc tattcattct cgcgttaact ctcacacttt      2640
     cgttaccgat ttctgggtga taagatcaat ttctacatat caacccgacc atgaagtcaa      2700
     ctttgcgcaa tggagtattc cagcaagcat taagctggca gaccctagat tctacaagcc      2760
     cgcaaaagtg ggcttactaa ttggagcaga atcctttttc gaactattga gtgtaggcca      2820
     aataaagcta ggttcccaac atccgttaat tcagaagact ttattgggat ggattgtttc      2880
     gggtaaatat actcagcatg catcgaatag agctcaggtg tgtagcgtca cggtcaaaga      2940
     aaatattggt tctctcgact ctctggtgga gcgattttgg gacttagaac aagtcgctga      3000
     gagatcgaag gctgcctata cagctgaaca atttgcgtgc gagcaaaact tcaatcaaac      3060
     cgtacgcagg ctatcgtcag gtcgttttga agtgaaactg ccatttaaaa cagatccaag      3120
     cgttcttggc ttatccatcg caacggcaaa gcgcagattt tttgcgttgg agcgcaaact      3180
     ggcaaataat gccgagtcat atgacatgta tcaagacttc atgaaagagt accttgctct      3240
     tggacatatg tcattactac caacccctcc tccaggacac cactactata taccgcatca      3300
     atgtgtcctg agacctgaaa gtagctccac aaagttgcga gttgtattcg acgcatcgag      3360
     taagacgtca acctcggtct cactaaatga gactttaatg gtgggtgcaa ctattcagag      3420
     ggagctttac tctattctag caagatttcg attgaacaag tatgccttaa cggctgatat      3480
     cccaaagatg tataggcaag ttaacgttgc cgcagaaaat cgggactttc aacttatctt      3540
     gtggagggag aaatcgacac aagctctcca aacctatcgt ctcaacactg ttacgtatgg      3600
     gacagcctca gctccgtttt tggccatccg ttgtctcttt gagctatcaa agatttatgc      3660
     tgaatcacat cctattgctt cagaggtgat atcaagcgac ttctatgttg acgatatgct      3720
     cacaggagcc agcagtttag aagagttgga aaccattcgt agagaagtaa ctgaggtctt      3780
     aaaatttgga ggctttgatc tggccaaatg ggccacaaat catcctagtc tgctggataa      3840
     tagagggtca gacaagtctc ttaaagttga cccttccgct tccattaaaa cacttggtat      3900
     gagatggaat cctcagaatg acgtttttca ttatagcttg gaggattcgt ttgattcgtt      3960
     gccagcaaca aaacgcaaca ttttatccgt catagctcgg ttgtttgatc ccttgggtct      4020
     attgtgtccg ttgataacta gagcaaagat cttgctttag gaactgtggc gacaaaaatt      4080
     ggattgggac gagtcagttc ccatgagttt gcataccagc tggaataggt tcaagcagaa      4140
     tttactagaa ctagacaaga tctccatacc tcgatatatc tgtctgtctg cttatgaaac      4200
     tgtccagatc cacggctttg cagatgcgtc gagtgaggcc tacggctgtt gcatatatat      4260
     ccgtaccatg gttgggacaa ctggtctatc gagactgcta accgccaagt ctcgagtgtc      4320
     tccccttaaa acaaagtcaa ttccaaggct cgagttgtgt gcagcgcatc ttcttgctaa      4380
     gctatgggct caagtagctc ccttgcttaa caactttaac ttggaaagca taaatttctg      4440
     gtcggactct caagtcacat tatattggtt gaaaagggat ccatccacat tagcaacgtt      4500
     tgttgcaaac agagtatctg agatccaaga gctttcagaa aatgtagtct ggcgtcatgt      4560
     gcctactgaa gagaatccgg ctgatttggt gtcacgtgga acagatatag atggtttgaa      4620
     gtgtactctg tgggaaaacg gaccagaatt cttgctcaga agtcaagacg agtggcctcg      4680
     tcttcatcag attgaagttt cacctgattt acagctgtcc gagaacaaga aaagcgtggc      4740
     agtgtgttcc gtaacaaaaa gccaacctaa tttttttttt tttttttggg ggtgtttttt      4800
     ttttaaaaaa atttttttgg tttttgggta ttttaatttg gtttttttaa aggaaaaagc      4860
     ggcgtcgaga cgtaaatatt tcggcacaag aactaaaaat atcgttcgtt aggctggtcc      4920
     aagtacttca gaatcttgag tttggttcag aacacattaa gttagagaaa tcagaatgtt      4980
     tggccccaca tcttcaacgt ctaaatccct tcatacacac aatggagctt gatggtatga      5040
     cctttcgatt aattcgtgtt ggaggcaggt tgggtaatgc gcctattcgt tatgatgcta      5100
     aatttccatt attgctgtct caaaagtcac aatttgttac cctctttctt cgcaatttgc      5160
     atcagactca ttatcatgca ggtgccaaag tgatggtatc actcttgagg cagcagattt      5220
     ggcttatcaa cgcacgagag gcgtgtacga ggattgtccg tagctgcgtc cactgtttcc      5280
     gttataagcc caagctactt ggtcagataa tgggcaattt gcccgccgat cgggttagga      5340
     aagctcgacc ctttttgatt tgtggggtag acttctgcgg tccattctat gtctcgttga      5400
     agctccgtgg gaaacctccc ataaagactt atgtggctgt cttcgtttgt ttttcgtcaa      5460
     aggctgttca tcttgagctc gttgttgatt tatctactga cagcttctta tctgtgttca      5520
     aaaggtttgt cggacggaga ggtcttccgg agaaggtata cagcgacaat gccaccaact      5580
     tcgtgggagc gagcaaggtt ctcgaagagc tgcacgtagc gtttcaccgg aacaaggatc      5640
     aactgacggc gtacgcggct cagaggggcg tcgagtggtc gtttatccca ccgaggtcac      5700
     cacacttcgg cgggctatgg gaggcagccg tcaaggcagc caagcatcgc ttgctgcgag      5760
     gggtcggcaa cgccaagctc acagcagacg agttgagcac ccacctagtg gaggtagaag      5820
     cgctgctcaa ttctcgtccg attgcgtcgc ctggcaacga ccccaacgat ggagaagctc      5880
     tcacaccagg acatttgctc atcggtcagc ctcttcttac gctgccgcca gaatccgaaa      5940
     caaacgaaat ctgcagcaag gcaagcttcg gatatttgaa gcggtggcga atgctgtctg      6000
     cgctcaagca gcagttttgg caaagctggt ccaaggatta cctggccagc ctgcagcagc      6060
     gcaacaaatg gagcatcgag ggccccgatc taaagattgg gtgccttgtt ctcgtccacg      6120
     aggacaatct gccgccgcaa cggtggctta cagggcgcgt ggtggcaaca ttattcggca      6180
     aggacggcag agtgcgtgtc gccgaaattc agacgtctgg aggcgtcatc aagcgcgcaa      6240
     tccacaaact ggcgttgctg ccaataagca gcacaaacga ggaagttaaa gcgccggagg      6300
     cctttaacgg ggtcggaa                                                    6318
//
ID   BEL-50_DTa-LTR repbase;    DNA;    INV; 397 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   13-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-50_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-397
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5670-5670 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 397 BP; 114 A; 74 C; 77 G; 132 T; 0 other;
     tgttggatca gtagccttat tttgtaatta ttaaaaatag gaaaacatga atttaaaaat        60
     gaaaagaatt atctgaattg taaacaaaac ataatgttaa tattcgcatt cacatacgag       120
     ctttgtttgg gtttgcactc aagctcacca catagctgag tcgcttactc ttatactgat       180
     aagcttgtaa cttcggaact cttgtaattg ttcgcactgc tcgtgggagt cagtcgttcg       240
     ttatcgcttg aaaccgctgg ctgcgccagc gcaataaatg gattaaaatt ggactgctgc       300
     tctgtttttc gttcgagtgg aaaatcccca gctaggttgc ttaacgtagt cgcatttgta       360
     acatattctt ttccgtgaaa aatctcacgg attttca                                397
//
ID   BEL-51_AA-I repbase;    DNA;    INV; 6531 BP.
XX
AC   supercont1.362;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_AA_;
KW   BEL-51_AA-LTR; BEL-51_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6531
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.362; Positions  701665  695135.
XX
CC   'CATCG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..1103
FT                 /product="BEL-51_AA-I_2p"
FT                 /translation="MMPTTTRAAAKASAGGSQCICEKCKIPNHVANMVTCD
FT                 RCRRWYHRTCAGVAESLNGKWTCKDCVLVVTISEASISGRTSSTSRSTRVQ
FT                 LQLMRLEEEKKSQEKLILEQQEQDRIRQEKALAAKAALDKRYLDEKYALLI
FT                 AEADDGEASSQRSRRSRLSRNSQVQEWIQDVDEAVGGVVNVDDIFPPISVG
FT                 TEVNVPIGGMVAKYTGTIPKVPSNPLIGGVSEGEAHSSSRRAIDWLADNVA
FT                 TEGMCSTTGMRDPITASTPIRSVGYCVSANKSTFNTYAIDVYTTNFNTTSV
FT                 YPVDDSTTNVTSTPYNRSWFHGRVYQHFCLLSQYQGQQLIRHVLHYHQ"
FT   CDS           1563..3140
FT                 /product="BEL-51_AA-I_3p"
FT                 /translation="MQNQQAMWGQFQQQLSARQVVPKDLPVFSGSPEEWPL
FT                 FVSSYRNSTAMCGYSQSENLMRLQKCLKGKALEAVRSNLLLPSSVPKVMET
FT                 LETLFGSPERLVQSLLNKVRSVPTPRAERLETLVNFGLVVQNLVGHLKAAN
FT                 QEAHLTNPTLLQELVDKLPPHIRLDWALYKKNFGRVDLGTFCDYMSAITSA
FT                 ASDVAHFTDFDGARSGGHEKQRKEKVVINAHVSAKPRKFDQKAKKTENQER
FT                 PCYVCQSVRHRIKDCNKFKSLSIEERMKVVETHQLCMVCLVPHGKWSCKST
FT                 RTCGVGDCTKRHHPSLHVGQQTPSDCSGTRQKSEAVINIHRRIESSTIFRI
FT                 VPVVLYGKEAKLSTFAFLDEGSSSTLIDKEVADLLNLEGKLQPLCLTWTSK
FT                 VSRHEAGSRMVSLRISEHESSESFPLIDVSTVSQLDLPVQTLRYEELSRRY
FT                 SYLAGLPVESYDDAVPRILIGLENIKLSLPLNIREGRTHGPVAAKTRLGWT
FT                 VFGSTDGRKLIRGPPFCTSARTPKKLSCTT"
FT   CDS           4106..6529
FT                 /product="BEL-51_AA-I_1p"
FT                 /translation="MAWLPEEDVFVYFVKIPNGGECSGSAREVTKRSILRF
FT                 VMSVFDPLGLISNLLVHGKVIIQDLWRAQVGWDDAIPSNILENWTRWIEQL
FT                 TKLDHLRIPRCYFSGYNPDSYRTLQLHVFVDASESAFACVAYFRIIDHGQP
FT                 RCTLVASKAKVAPLKPLSIPRLELQAAVIGSRLAKSIEGYHTLPVSRRFFW
FT                 SDSKTVLSWIGSDARNYRQYVAVRIGEILDESKAEEWRWVPTKLNVADEAT
FT                 KWGKGPVFHPDSRWFTGPNFLFQPENEWPQQQVALVDTEEEIRIVHVHRTK
FT                 LMKPFIEYDRFSKWERMLRTTAYAYSFVDRYLALGKQGASQDKQTLRQEHL
FT                 QRAERALWRLAQAEAYAVEIAVLQSGPDGKRSSKLEKSSPISKLSPFLDDY
FT                 GVVRMAGRTEASELAPYDAKFPVILPKTHRVTELLIDWYHRRFGHHNSETV
FT                 VNELRQRYHISALRTVVRRVAKRCQWCKVYKANPVVPRMAPLPEARVTPFV
FT                 RPFSLVGIDYFGPYMIKIGRSQVKRWVALFTCLVVRAVHLEVTASLSTEAC
FT                 KLALRRFIARRGAPNQIYTDHGTNFVGASRELANQISAMNQELSETFTDAN
FT                 TRWFFIPPSSPHMGGAWERMVRAVKTAMESINNSRAPSEEVFQTMLCDAEA
FT                 MVNSRPLTYVPLETSDQEALTPNHFILLSSNGVKQPEKAPVAEGEALRNGW
FT                 NLCRSLLDQFWARWIREYLPDLTRRTKWHEETKPIQEGDVVFIVGETTRNL
FT                 WPRGKVVKVIPGKDGRIRQADVQTGAGVLRRPVAKLAVLNILPSGNPAKSE
FT                 QHYGGG"
XX
SQ   Sequence 6531 BP; 1761 A; 1532 C; 1705 G; 1533 T; 0 other;
     atctttaaag atttcgactc gttcagcctg tgctgctgag ttagcaccga ttggttcgta        60
     gaggtcacgc aaaggacgaa tccatgatgc ccactaccac ccgggctgcg gcgaaagcca       120
     gtgctggggg gtctcagtgc atttgcgaga aatgcaaaat cccgaatcac gtagcaaata       180
     tggtaacttg cgatcgatgt cgtcgttggt accatcgtac gtgtgcaggg gtagctgaga       240
     gtctcaacgg aaagtggaca tgcaaagatt gcgttttggt ggtgactatc agcgaagcct       300
     ctatttcggg aaggactagc agtacatctc gttcaacacg ggttcagttg cagctcatgc       360
     gacttgaaga ggagaaaaaa tcccaggaga aactgatcct tgaacagcag gagcaggacc       420
     ggattcgtca agaaaaggcc ctggccgcga aagctgcgct agataagcgg tatctcgacg       480
     agaaatatgc gctgttgatc gctgaggcgg acgatggaga agctagcagt caaagaagtc       540
     gtcgcagtcg attgagccga aatagtcagg ttcaggaatg gatccaggat gtcgatgaag       600
     cggtcggagg tgttgtgaac gttgacgata tcttcccgcc gatttcggtt ggcaccgagg       660
     tcaatgtgcc cattggagga atggttgcga aatacactgg aacaattccc aaagtcccat       720
     cgaatccgtt gatcggtgga gtgagtgagg gagaagcaca ttcttcatcc agacgtgcga       780
     tcgactggct ggccgataac gttgcgactg agggtatgtg ctctacaacc ggtatgagag       840
     acccgatcac agcatcaact cctatccggt cggttgggta ttgtgtctca gccaacaagt       900
     caacgttcaa tacgtacgca atcgatgtat atacaaccaa ttttaacaca accagtgtat       960
     acccagtcga tgatagcaca accaatgtca cctctacccc atacaaccga agttggttcc      1020
     acggccgcgt ttaccaacat ttttgtttgc tgagccaata tcaaggccaa cagctgatca      1080
     ggcacgtgct tcactaccac caataagtga atccccatta ctaccctcga gcgttgaaca      1140
     gcatgcagag acgagtcagt cgcattctac aacacaacaa ccactggccc cccgcacttt      1200
     ggtgccgctg ccgtcgcagc caccgccggt atcgcagtcg tcgatcaacc catcatttca      1260
     acccaacgag cagatatcga gcatgcaact accaccaaca tctcaagcgt cgttctctca      1320
     gacgtcggtc tgtcagacgt cgttccagca gcagccgtat acactcgcag gtcaacaagc      1380
     gacgatgtgc gatgagttag agaaacaatc gcaacctcca tctgtgtgcg agaatcggta      1440
     tcatttactc cacaagcaca gcacccgcac gagtcggaga atttgtgcct gtccatcaat      1500
     cattgtcctc gcatatatcg ctacaacaac cagcagagcc gtatgttacc cagctgcaac      1560
     agatgcaaaa tcaacaggca atgtggggac aatttcagca acaattgtcc gccaggcagg      1620
     tagtgcccaa ggacctccca gtcttttctg gtagtcccga ggaatggcct ctttttgtga      1680
     gcagctaccg caattccact gctatgtgtg gctattctca gtccgagaac ttgatgaggc      1740
     tacaaaaatg ccttaaaggc aaagcgttag aggctgttcg gagtaacctt ttgctacctt      1800
     catcggtccc gaaagtaatg gaaacacttg aaacattatt cgggagccca gagcgactag      1860
     ttcagtcgct gctcaacaag gtgcgcagtg tccctactcc gagagccgaa aggcttgaaa      1920
     cgttggttaa tttcggtctc gttgtccaga atcttgtggg ccacctcaaa gctgccaatc      1980
     aagaagctca cctcaccaat ccaactttgc tgcaggagct ggtggataag ttgcccccac      2040
     acattcgttt ggattgggct ttgtataaaa agaactttgg acgagtcgat ttggggacgt      2100
     tttgcgacta tatgagcgct atcacgtcgg ccgcaagtga cgtagctcac ttcactgatt      2160
     ttgacggtgc tcgttccggt gggcatgaaa agcagagaaa ggaaaaggtg gtgatcaatg      2220
     ctcatgtttc tgccaaaccg cggaaattcg accagaaggc gaagaagacg gaaaaccagg      2280
     aaagaccctg ttatgtctgc cagagcgtca ggcatcgaat caaggactgt aacaagttca      2340
     agtccttgtc catcgaagaa cgtatgaagg tggtagaaac tcaccaactt tgcatggttt      2400
     gtttggtgcc gcatggaaag tggtcctgca aatcaacacg cacctgtgga gttggagatt      2460
     gtacgaagag acatcatccc tcgctacacg taggtcaaca aaccccctcc gactgttctg      2520
     gaacaagaca gaaatccgaa gccgtcatca acattcatcg tcgaatcgaa agctctacaa      2580
     tattccgtat agtaccagta gtattgtacg gaaaggaagc aaaactatct acctttgcct      2640
     tcctcgacga aggttcatcg tcgacactga tcgataagga agttgcggat ttgttgaacc      2700
     tcgaaggcaa actgcaacca ttgtgtttga cttggacctc taaagtttcc cgtcacgaag      2760
     ctggttccag gatggtttcg ctgaggattt cggagcacga aagcagcgaa agttttcctt      2820
     tgatagatgt tagtaccgtc agtcaattgg atcttcccgt gcaaactctg cgatatgaag      2880
     aattgtctcg tcgatactcg tatttggctg ggctaccggt ggaaagttat gacgacgccg      2940
     ttccaagaat cctcattggg ttggaaaaca taaagttgtc gttacccctc aatatacgtg      3000
     aagggcggac acacggaccg gttgccgcaa aaaccaggtt gggatggacc gtttttggga      3060
     gcactgatgg ccgtaagttg attcgtgggc ccccgttttg cacatctgca agaacaccaa      3120
     agaagctgtc ttgcacgacc tagtaaaagg ctatttcgcg atggagaatc tccgaagttt      3180
     ccattgcttg tggacccgaa acagaagacg atcgccgagc gaaggagatt cttcgacaaa      3240
     cgactatcaa gcgtgctgac ggtcactatg aaaccggatt gttatggcgg tacgatgttg      3300
     tggagttgcc atccagctat aatatggcgg aacgtcgttt gctctgctta gagcgaaagc      3360
     tgcggtctaa tccggaactg caagcgggct tggaaaagca gatttccgaa taccaggcca      3420
     aaggctatgc ccacaaagca acgcctcagg agttggcggg aagtgatccg caacgtacat      3480
     ggtaccttcc acttggggta gtgacaaacc ctcgcaagcc agggaagata cgcatcattt      3540
     gggacgcagc cgcaaaagcg aatggtgtgt cactgaacga cgtactgttg aaaggcccgg      3600
     acctgttaac atcgttgccg gcggttctgt gtcgttttcg gcaacgagaa gttgcgattg      3660
     caggagatat tcgggagatg tatcaccagc taaaaatcaa gaaggaagac tgccaagttc      3720
     agcgctttct ctaccgaagt gacccatcga aaaaaccgga tatctttgtc atggatgtgg      3780
     cgatcttcgg gtcgacttgc tcaccctgct ccgccaattt cgtgaagaac atgaatgcac      3840
     tggagtggaa agaaaaattg ccagaagctg ctgcagcggt gatagataac cactatgtgg      3900
     atgattatct cgacagtcga gatacagaaa cggatatggc aatactggct tcggatgtgc      3960
     ggaaggttca ggcagaggca ggtttcgaat tacgaaattg gcgttccaac tctaagaagg      4020
     tattgcaggc cctcggagaa gacgcagcaa tctcaaggaa ggatttcagc atcgacagga      4080
     aagccaggtg gaacgcgtcc ttggaatggc atggttacca gaagaagatg tatttgtata      4140
     ttttgtcaag ataccaaatg gtggcgagtg ctcaggatcg gcaagggagg tcacgaagcg      4200
     cagtattctg aggtttgtca tgagcgtctt tgatccactt gggttgatat caaacctgct      4260
     tgttcacggt aaggtgataa tccaagacct ttggagagct caagttgggt gggatgatgc      4320
     tattccatcg aatatcctgg agaattggac ccggtggatc gagcaactca ccaaattaga      4380
     tcaccttagg attccacggt gctatttttc cggatacaat ccggatagtt atcggacgct      4440
     tcagcttcat gtttttgtgg atgcaagtga gtctgcattt gcttgtgtcg cctactttcg      4500
     catcatagat cacggtcagc cacgatgcac tttggtagct tcaaaggcca aggtagctcc      4560
     attaaagccg ctttcaatcc ccagattgga gctgcaagcg gcagttattg ggagtcgatt      4620
     ggcgaaatcc atcgaagggt atcatacact acccgtaagc cgcagatttt tctggagcga      4680
     ctcaaaaacg gttctatcct ggattggctc ggatgcacgg aattatcgcc agtacgtagc      4740
     agtacgaatt ggtgaaattt tagacgaatc gaaggcagaa gagtggcgct gggtacccac      4800
     caagctgaac gttgcggacg aggccactaa atgggggaaa ggacctgtct tccatccgga      4860
     cagccgctgg ttcacgggac caaacttcct cttccagccg gagaatgaat ggccacagca      4920
     acaggtggca ttagttgata cggaagagga gatacgaatc gtgcacgtac atcgtacaaa      4980
     gcttatgaaa ccattcatcg agtatgatcg attttccaag tgggaacgaa tgcttcgaac      5040
     cactgcgtac gcgtattcat ttgtggaccg ttacttggct ctcggcaagc aaggagcttc      5100
     acaggataaa caaacgttga ggcaagaaca tttacagcga gcggaaaggg cattgtggag      5160
     acttgctcaa gcagaagctt atgccgttga aattgcagtt ctacagagtg gaccagacgg      5220
     gaaacgatcg tcgaaacttg aaaaaagcag tccaataagc aaattatcgc cgtttctaga      5280
     tgactacgga gtagttcgta tggcaggtag gactgaggca tctgaactag ctccatatga      5340
     tgctaaattt ccggttatcc taccaaaaac tcatcgagtg accgaactgc tgatagattg      5400
     gtaccacaga cgatttggcc atcacaatag cgaaactgtg gtcaacgagt tacgtcagcg      5460
     atatcatatc tctgctcttc gaacagtggt acgtagagta gcgaaaaggt gccaatggtg      5520
     taaagtatat aaagcgaatc ctgtggtgcc tagaatggcg cccctacctg aagcacgtgt      5580
     aactccgttc gttcgtccct tctcactggt cggtatagat tattttggcc cgtatatgat      5640
     caagatcggc cgaagtcaag taaaacgttg ggtggcactc ttcacgtgct tggtcgtaag      5700
     agcggttcac ttggaggtta cagcttcgct ttctacagaa gcctgcaagt tggccttgcg      5760
     acgattcatc gcgagacgtg gtgcgccgaa ccaaatctac actgaccacg gaacgaattt      5820
     tgttggcgcc agtcgggagt tagctaacca aatatcagca atgaaccaag aattgtcgga      5880
     gacgtttaca gatgctaaca cacgctggtt cttcatccca ccttcctccc cgcacatggg      5940
     tggggcttgg gaaaggatgg taagagcagt taaaaccgct atggagtcga tcaacaattc      6000
     tcgtgcgcca tctgaggaag tttttcaaac aatgttgtgc gatgctgagg caatggtcaa      6060
     ttccaggcct ttgacctacg tgccgctgga gacttcggac caagaagcat tgactcctaa      6120
     tcatttcatc ctccttagct caaatggtgt caagcagccg gagaaagctc ctgttgcaga      6180
     aggtgaagca cttcgaaacg gatggaatct gtgtcgcagc cttctagatc aattctgggc      6240
     aagatggatc cgggaatatc ttccggactt gacccgacgc accaaatggc atgaggagac      6300
     gaagcctatt caggaaggag atgtagtctt cattgttgga gaaacaactc ggaacctttg      6360
     gcctaggggt aaggtcgtga aagtaatccc agggaaagat ggtcgtatca ggcaggcaga      6420
     cgtgcagaca ggtgcaggag ttcttcgccg tcctgtggca aagctcgctg tgctcaacat      6480
     attaccatcg ggtaatcctg ctaagtcgga gcagcattac ggaggggggg a               6531
//
ID   BEL-51_AA-LTR repbase;    DNA;    INV; 692 BP.
XX
AC   supercont1.362;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_AA_;
KW   BEL-51_AA-I; BEL-51_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-692
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.362; Positions  695134  694443.
XX
SQ   Sequence 692 BP; 236 A; 116 C; 131 G; 209 T; 0 other;
     tgttgcggga ggcgttacga acgttgacgc ttcagcaaaa agctccacag ggatgctgcc        60
     ggcctgacgg atcagcttga catccaatga cttctattgt atgagtggca cgaatgacag       120
     aaaagcagat gaattgtata atgtggtgat gaaattgtgt cggatcctga attaattatt       180
     actacggaaa aactgttaat ttactattga ttagaactag ttttggatta ccttttgatt       240
     attgctagtg agttaaacac gtaaaactac aatatgtaca agaaaaatgt gtataattca       300
     caaatttatg attttaggtt atgttccatg cacttactcc tacttaatct tacgacaatg       360
     aattaaaatt gaattataac ttaaaatact ttcttaaact atacaacagt gagtaaactt       420
     atattctaat gaatgactta agactaagac tttaaagctg acttaaacag gtagactgac       480
     ctcgagactg actataaatt acaggacggt aaccaggacg tagacgttgt attttgagtc       540
     accgaaatgt gagtacaaat ggacataatt atagactgta ggaaaagtga ccaacaattt       600
     atattttagc tttaaagcgc tattgccgaa taaaatggaa ttcgctaaaa ggactgtgac       660
     ccgttttttc tacgtctccc accgcgccaa ca                                     692
//
ID   BEL-51_CQ-I repbase;    DNA;    INV; 3166 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_CQ_;
KW   BEL-51_CQ-LTR; BEL-51_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3166
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 255-255 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TAACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           622..3165
FT                 /product="BEL-51_CQ-I_1p"
FT                 /translation="MDSTTKKKLTDAFRQRYRTERKVIFVQELLLGLYEPT
FT                 LAQLTALYEFLVKSYREQSRHHLQVIGLIPDECLAAQEAEFEKYDALFYEV
FT                 ATALAELQIEAEQTVPSATTPIAANRQRLQAEAWLKQMLKAWESNQVDIRD
FT                 SGIETQAPESQEVVLRDCALSKPKPLQEQAEVNRKHFVEPPKQDPVGHRVS
FT                 AGILEDAVAITTKHDEIVNAEPLLPATELIRDQHNEASHSCVPWDSSPEVT
FT                 SRLVKVPSVVKHEALVLRSVHLDGKSSAVFDTSSKPAKPTNPQGHHRANQD
FT                 GGFIPGKDPLVPSEVKAPDKLEQIHTTPNSQPQTFDAHPSGRQTVRIISRT
FT                 MPHSCVPISRHDPFTPTLTGADQSKPEANRCSRIVHSVTAFSTTTVDFYTT
FT                 LKHWNPAKALSQRHACLAMFVTSAPNKRFVVNAPDRTEDLAHKRSAGRQTL
FT                 RHENVLQEPRPIFIQQPLKDRSKSDFNRSQALYEFCKPRKRLLRILDLKVR
FT                 NVRKRRCNSVGPPPSQLCSSPDPEDKPPDDLTTRGAPVEDQTIVCILTHPW
FT                 DTGTKSPFIVTAESDQVQPLQQEVVQYSDDEANQRRVHSDSGPQTKVRIRK
FT                 HTQNQNHRVQPRQMIVPNSVSPGNSAFHVNEQRRPEDLGVTGELQVKCSRS
FT                 SHSWSYAERGSSNVFVVHQSRKPSHKPTSNLSNLTPYKFSNVDTSRRVPNI
FT                 RITNRLSTTWLESSASPPETRPLLIALEPSQPVEMKLVIAILRIQGSCHEP
FT                 PSQDELFQVRIQPRRFQRTVDRWRRLWHPTVPPDELSRDPKSAQPSKRKYN
FT                 FRGIHAILPAIEDVGERREPADQSAAIHRKRCVGLTKELRDLNGGS"
XX
SQ   Sequence 3166 BP; 855 A; 984 C; 773 G; 554 T; 0 other;
     tggtctcatc gaaccggatt tgaaccccgc ccaagcctcc aaaagtgaaa tcactggatt        60
     caaccggtac tagtccagcc gttccggaag cgaccggaat acgtcaatca agcactcctg       120
     tacaagttcc ccaccccgct gccccatcgc agctcgacgt ttccgagcga ctgtccagcc       180
     gtggaagtca tcggaagtcg gattcccgga agtgaactcg cgcggatgca caaagccggc       240
     gagttgttcc tgcccaagtt cccctgctgc cccatcgcag cttgaccggt tccgagcaac       300
     tgtcccaccg cggaagttgt ctgaattcgg attcccggaa gtgtccaccc taggaacttc       360
     ctccaagcag ttcacccgac gaactgctct cgcgcggatg tacaaagccg ttgcgtcatc       420
     ccagtccaag cattcccgga acaacccatt ccgagccgaa accgcgtaca aactagcttg       480
     tgcgtgtgtg tatgtgtgtc tccgccaaaa agtgtcatcg tccagccgag gaggcgaact       540
     ttccccgacc aaacagcagc cactgtccga ccgataacag gagtctcgac gttgacttcc       600
     ttagaccaaa aggaaaaagc catggactcc acaacaaaga agaagctgac ggatgcgttc       660
     cggcagcgct accgaacgga acggaaagta attttcgttc aagaactgct gctgggtctg       720
     tacgaaccga cgctggcaca gttgacggcg ctatacgagt ttttggtgaa atcgtaccga       780
     gagcagagcc gacatcacct gcaagttatc ggacttattc cggacgaatg tctcgccgcg       840
     caagaggccg aattcgagaa gtacgacgcg ctgttctacg aagttgctac agcgctagca       900
     gagttgcaga ttgaagccga acaaaccgta ccaagtgcaa ccacgccgat cgccgccaac       960
     agacagcgcc tgcaagcaga agcatggctg aagcagatgc ttaaagcctg ggagtccaac      1020
     caagtggata tccgtgattc aggcatcgaa acccaagcac cggagagtca ggaggtggtc      1080
     ttgcgagact gcgctctttc aaagcccaaa cccctccagg aacaagcaga agtgaaccgg      1140
     aagcatttcg tggaaccacc caaacaagat ccagtaggcc accgtgtgtc tgctggaatc      1200
     ctcgaagacg ccgtcgccat caccacgaag catgacgaaa tcgtaaatgc cgaaccactg      1260
     ttgccagcaa cggaacttat ccgagaccaa cacaacgaag caagtcacag ctgtgtcccg      1320
     tgggacagca gccctgaagt gacgagcaga ctggtgaaag tgccatctgt cgtcaaacac      1380
     gaggcacttg ttctgcgtag tgttcacctg gacggaaaat cctcggcggt gttcgacaca      1440
     agttcgaaac ctgcgaagcc aaccaatcca caaggacatc accgcgccaa ccaggatggc      1500
     ggtttcattc cgggaaaaga cccgctagtg ccgtcagagg tgaaggcccc ggacaaactc      1560
     gagcagatcc ataccacgcc aaacagtcaa cctcaaacct ttgatgccca tccaagcggc      1620
     cgtcaaactg ttcgtatcat cagcagaacg atgccccatt cctgcgtgcc aatatcacgc      1680
     cacgacccat tcacacctac gctgaccggg gccgaccaga gcaagcctga agccaacaga      1740
     tgttctagga ttgtccattc cgtaacagcg ttctccacaa ccacggtgga tttctacacc      1800
     acactcaagc attggaaccc ggccaaagcg ttgtcccaaa gacatgcttg cctggccatg      1860
     ttcgtgacca gtgcccccaa taagcggttt gtcgttaacg caccagatcg aaccgaggac      1920
     ttggcacaca agcgaagtgc tggaagacag acactacgac acgaaaatgt gctccaagaa      1980
     ccacgcccca tcttcattca gcagccgttg aaagaccgca gcaaatcgga cttcaaccga      2040
     agtcaagctc tttacgagtt ctgcaagcca aggaagagac tactgcggat tctggacctc      2100
     aaggtgcgaa acgttcgtaa acgacgatgc aactccgtcg gacctccacc atctcaactt      2160
     tgcagttcgc ctgacccaga agacaagcct cccgacgacc taacaacaag aggcgcgcct      2220
     gtagaagacc aaacgatcgt atgtatcctg actcatcctt gggatacggg aacaaaatcg      2280
     cccttcattg tcactgcaga atcagatcag gtgcagccac tgcaacagga agtggtgcag      2340
     tactccgacg acgaggccaa ccaacgccgt gtccacagcg acagcggccc ccagactaaa      2400
     gtccgtatcc gcaagcacac tcaaaaccag aatcaccgcg tccaaccgcg gcagatgata      2460
     gtcccgaaca gcgtatctcc gggcaacagc gcattccacg tcaacgagca gcggcgtccc      2520
     gaggacttgg gtgtcacagg agaacttcag gtgaagtgca gccgatcatc ccactcctgg      2580
     tcctacgccg agcgtggatc gtccaacgtc ttcgtagtcc accagtcgag aaagccaagc      2640
     cacaagccaa caagtaatct gtccaaccta accccgtaca agttctccaa cgtagacaca      2700
     agccgtcgtg tgcccaacat ccggatcacg aaccgcctga gcaccacttg gttggagtcg      2760
     tcagcatcac cacctgaaac cagaccgctc ctgatcgcac tagagccaag ccaaccagtc      2820
     gagatgaagc tcgtgatcgc aattctccgc atccaaggta gctgccacga accgcccagc      2880
     caagatgaac tgttccaagt gcgtattcaa cccaggcgtt tccagcgaac cgtcgatcgt      2940
     tggcgcaggc tctggcatcc gacagtccca ccggacgaac tgtcacgtga tcccaagtca      3000
     gctcaaccca gcaagcgcaa atacaacttc cgagggattc acgccatcct accggccatc      3060
     gaagacgtcg gcgagcgacg agaaccggcg gaccaatccg cagccatcca ccggaagcgt      3120
     tgtgtgggcc taaccaaaga gttgagagac ctcaacgggg ggagta                     3166
//
ID   BEL-51_CQ-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_CQ_;
KW   BEL-51_CQ-I; BEL-51_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-306
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 256-256 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 306 BP; 90 A; 89 C; 71 G; 56 T; 0 other;
     tgttcggtac caccgaaggc tgaaacccca ccgcgtttcc gacccgaaga ctcaccgtgt        60
     tacgccaatc tgctttaccg acgagcgaga aacgtcactc attgcgagag gccaaaccgg       120
     ccaaacaagt ccacgtccaa ccttcgatcg agaaggacac acagcagcaa caggaacagt       180
     tttttagagt agcaggagga ggaagaggaa aaataaaggt agaaaattaa gatctccggt       240
     gttttttcct cctgcgtgac tacgctccat acagtccacc actcccatgt cggccaggcc       300
     cgaaca                                                                  306
//
ID   BEL-51_DTa-I repbase;    DNA;    INV; 5817 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   13-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5817
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~99% identity to each other.
XX
SQ   Sequence 5817 BP; 1605 A; 1553 C; 1258 G; 1401 T; 0 other;
     tttttggtgg cccatgaggg gaactgttgt taagcttgcc aatgaatgga gtttgaattg        60
     atttggaaca aacaattggt cgcaataatc tgaaacaaag ccaacggcta ttaaattgtg       120
     ccagtggatc cactctttct acgaataacg gaccgaagaa cacgggatcg ctgcgcgacg       180
     aataacggac aactgaacga gagattgcgg ctactgctac acagactgac tggaagccgg       240
     tgagtgtttg tatgtgagtt ctgtgatttc aagtgcgttg ttgtaaattc aataacacta       300
     tgggtaacga cgataaaaag acaggttcac cagccaatcc ttccccaacc gatccgttcg       360
     ctggattgca cgcgagacag aaggatttat ggaacaggtt gacgcaactc gatcgtaact       420
     tcaagaagga tggccaagcc cgaaaatcca aaccttattt tcttcagcga cttggcacgt       480
     taaaggattt attcacccag tttgatgcga atcaccaaca attggtcgat cagctgtgtc       540
     ccagtcaaca tgtatatttc tcagacaacc aatacgatcg gtttgttgag gagtatcagc       600
     aaatcttctg caacatctcg gaagactacg acaccaagtt ctcagcggta gcccaaattc       660
     ccccaccaat cgggtccgtc acaccaacgt tatcatccaa cattccgctt ccgaagcttc       720
     cagttccacg cttttcggga agctttacag attggccctc gttttacgat ggtttcctac       780
     aacttatcca tgataacaac actctcgcta acatccagaa gttccacttt ctcaagcagg       840
     ccttgcctga agggcgggac caggatgtca gtcacatggc cttaacggat tctgggtata       900
     ctgtagcctg aaatctcctc gtcaagcgct acaacaatcc acgtctccat tttatgcaca       960
     ccatggcggc actttatggt ctcgagtcgg ttcccaagga agcagaagaa ggtatcaggc      1020
     gcgtgctagc cctggctaat gtttgcatta gtgatcttcg tcgtttaaaa ataaacattg      1080
     attcttgcga tcactggcta atgcatcatc tgttaaccaa actgccaagc agcacaacgc      1140
     aagcgtggga gcactcgttg gggagctcca tcgtgattcc aaccttttcg atgttggaga      1200
     ctttccttct ggagcgccta gttagcatcg acctcatcga aaatcgaaat caaccactag      1260
     gaactcggtc aactccagga caatcttccc atccacgtgc gcctaaccga tccaccttca      1320
     attccactaa ctgccacagt tttcatgtga ctactaacat gggagcaccc cagtgcactc      1380
     tctgccaaca aaaccatgtt atcaggagat gccccagttt tctcgcgaag gattgctttg      1440
     ctcgtaagac gatcgccgat cgcatcaaag catgcctcaa ttgtctcagc acaggccacg      1500
     cgctaagcca ctgcagcagc actcgcaatt gcttgcagtg cggccaacgc catcatacgc      1560
     tactgcattt tctgaacgta gcacaacatc ctaccaactc tgccctatcg cgacagccaa      1620
     cgaatggtgt catctgtttt gtctcaacag cacagcttag cccccggctc aacggcttcg      1680
     aacgagacgc aactcctcag cgcagttgcc acacatcgaa atccatccac cacgattctc      1740
     gccacggccc taatccgaat tgtcaacaac caaacgggac aatctgtttt ggccagagcg      1800
     ttgattgacc atggctcgga aggaacactt atcaccgaaa gcgtagtaca aacgctgggt      1860
     ctctcacgca cccccatatc tgcggaaata acagggatcg gcgattcttc tcacaaccgt      1920
     tgtcgacata gtaccaattt tgtcttaagc tcgatttcag gttcccagtt tacatcgttt      1980
     gtatccactg catttattct ccgtacactt acagggcacc ttccaaaatc ggatatcgac      2040
     cctcgctcat tccaacacct tcaaggattg caactcgccg atcccaattt tgcccgatcc      2100
     agtcgtattg acgtgcttgt gggcgttgat ctcattccac aattgatgct cccagaaatt      2160
     cgaagaggaa ctcataagga accaatcgca caaaacactc ttcttggttg gattgttttt      2220
     ggaccagtga tggaatccat gacacactcc atcacgtccg ttgctacgtc acgaagctcg      2280
     atcatctggt gcaaaggttc ttcgagctag atagcgtgcc gtctgaacgc caactcacca      2340
     cagaggaacg atggtgtgaa gaacactttc gtcaaaccca tgttcgacag cccaacggaa      2400
     aatacatggt acgcttaccg ctgaaaacat tattcgaccc gtcacaagtg ctaggccggt      2460
     caaaacatat agccttgaat cgtttccacg cattagagcg aaaactgcag catcgcgatc      2520
     agcttcatca acaatatgtc caagcaatcg aggaatattt tgacctacag caaatacagg      2580
     aagtcactac aagcgaagac agtcactctc agactaacac aaatgggaag ctcggcgtct      2640
     tttgcagcac gattccacac catgcagtcc tgaaggagga cagcctgact actaaactca      2700
     gggtagttta cgacgcctct tgtaagagct ccaacgggaa atcactgaat gacatcttat      2760
     gtactggccc agctctacag aacgatttgg gaggagtcat cctaaattgg cgttgttatc      2820
     gctacgtttt cgtggctgac atccaaagga tgtaccgatg tatcgacatg catccagagg      2880
     actctcagtt ccagcgcatt tggtggcgtg acaaaaccgg agagttgaaa gagttccgtc      2940
     ttaccacagt taccttcgga acggcatcag cgccatacac ggcgattcga gtgatccacc      3000
     aaatagctca ggacgaacga gaaaattatc cgctagcaga aaaggtgctg caaagggaga      3060
     tttatttgga tgacgtacaa agcggccata agaccacgga cggtgccatt cgagtacgaa      3120
     acgatgtcat agcagccctc cgctctgccg gtatgcatct tcgcaaatgg gcagcaaacc      3180
     atccagcgtt gcttagcgat attcccgaag tagatctctg caaccactca atcttcgaaa      3240
     tggacaataa agacagtatt aaaactcttg gactgtactg gcagcccagc cctgacgtct      3300
     acggattcaa aatccatttc gcgatcaatg ccacactttc gaaaagatct cttttatcaa      3360
     cagtggcgcg gctcttcgat ccattaggat ttttagcacc cgtgatagtc atgtccaaga      3420
     ttctcctcaa ggacgaatgg agtttccgta tgcagaaacc tgatggcact tacagtgcac      3480
     tcgattggga tgacatgtta ccagaatctt tggccgagcg ttggcagcaa tatctcgaac      3540
     agcttccaga agttcaacac attcgagtac cacgctggtt tggctgcgac ttcggcaacg      3600
     cgatctcgat tcaattgcac atgttctccg atgggtcgtc cctcgcgtat gcagcatgtg      3660
     cctaccttcg agtactcgac acggctggaa gaatacacac acacttagtc gcagctcgca      3720
     gtagggtaac accaacaaag cctctcacca taccaagagt ggagctctca ggagcagttc      3780
     tggctgccaa acttgccaca tggatccagc agcaacttca cgtgcctcat atgcgtgtca      3840
     cagtgcacta ctggtcagat ggcgtctgat cgtacttcac tggatatatg gagatccatg      3900
     caggtggaag acttttgtag ccaatcgaat tggcagtata caagaggtca gctctgcttt      3960
     acagtggggt catgtggcta cacaggacaa tcctgcggat tgtgcaacgc gcggtttaac      4020
     accactacag ctagcgcagc ataagctctg gtggaacggc ccagactggt tgcaggaacc      4080
     cgaagatcat tggcccaagg taactcctac atctccagat ccgagcacac tctgcgaaga      4140
     gcaggcagca aaggttatac acgctcacac ctgttcatcc actgactcct ttgttgagtc      4200
     attttcgtca tacaatcgac ttgtattttc cacagcattc attaatcgct ttatccataa      4260
     tgctcgctgc aaaaaggagg ctccgctttc aggaccaatc agcgtaaagg agttttccaa      4320
     ggcaatgtct actctggttc gcattgtcca acaggaagca ttctctaacg aactgtccaa      4380
     gttgctaaca aataaatcgc tcccaaattc taacaagctt agccaactgt cgccattcat      4440
     agatgcccaa gggatcctca gagtgcgggg tagactccga aacgccttgc agctcaccac      4500
     tcaagaacgc acgcctatca tcctacctaa gtcacatcac tttacggacc tcgtcataaa      4560
     aaacgcccat ctggacacca tgcatggagg agtgcaactt actcgtgcga tcacccagca      4620
     gcagttttgg atcattaatg gaaaacaagc ggtaaaagga gttcttcgac agtgtgtggc      4680
     gtgctttcag catcgcccta aaccctctcg acaattaatg ggagatcttc cataccatcg      4740
     tgttaatccg ccgaatcgag cgttcgaagc cacaggtgtg gattacacag gagctatcga      4800
     ggtcaagtcc tcgagattta ggggacacac tacatacaag gcctacattg cagtattcat      4860
     ttgcctagcc agtaaagcta tccatttaga gctggtgaca ggactcacag cacaacattt      4920
     cctctgggct ctccaacggt tcatcggacg ccgcggattt gtgcggcaca tgtacagtga      4980
     ctgtggcaca aattttatag cagcagataa atccctacac ttgtggtcta acgagttccg      5040
     gcaagaaatc aaccagatag tcgtcccaga actcacacag cgctatattc agtggcactt      5100
     taacccccca cacagcccaa acttcggagg actctggtaa gctaacgtca aagccgtaaa      5160
     aactcatatt caccgttcct tcaaaggata cccaatgact tatgaacatt tatcaaccgt      5220
     tctcattcag atcgaggcat gtcttaactc tcggccatta tgcccgttaa ctgcgaacat      5280
     taacgatctg acagtgttga ctccagctca ttttctcatc ggagactcca ttcaatcgct      5340
     tcctacgcct agtgacaagg acaagtcgct caacacacag ttcatggagg gacaacggat      5400
     cctacgccag ttctggaaaa ggtggagctc agattggttg tctcaccttc aggcacgccc      5460
     taagtggaga caagaggaag agaacctaca ggtcaatgac ctagttatta tcaaggacga      5520
     caggacaggt ccaaccgctt ggaaactagg tcgtattcta gaattacacc ctggagccga      5580
     tgggatggta cgagttgcaa caatctatac aaattcgggt acatatacgc gatcagtatc      5640
     caagctctgc agattaccca ttccgaatta cacggaagct aaagtcgaga aagctaatat      5700
     tgaacaatag acacgcactt tgatctcaca tccatacctc agcaaacatt tcacctgttc      5760
     ctttcagtta ccattagaag gatgtcttaa tgctggaccc agcattgcgg ggcggca         5817
//
ID   BEL-51_DTa-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   13-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-51_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-349
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5671-5671 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 349 BP; 106 A; 89 C; 54 G; 100 T; 0 other;
     tgtacggtca tttgttgtcg taacgttcag gacttaacgt tagtgcatac cacaacccta        60
     taatcgatac ctcatcgatt cctatcgata ccagacccgg tcctgcttgg agcaacggac       120
     ccatctctaa gttcagcagc cattacgatt tttacgatct caacgaagaa agctgaacac       180
     acatttttat attgccaacc attgtttgct ctccaaaatc aattcaaatt aaattcaagt       240
     gaaactattg aagtaaaacc atttgttttc ttaacgagca acagcaaagt ccccatagca       300
     gacttctgct aatcattgac tcccgtattc tatcggcgca gtcacaaca                   349
//
ID   BEL-52_AA-I repbase;    DNA;    INV; 6333 BP.
XX
AC   supercont1.337;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_AA_;
KW   BEL-52_AA-LTR; BEL-52_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6333
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.337; Positions  584245  590577.
XX
CC   Positions [5390-5947] - Integrase core
CC   'GGATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..6313
FT                 /product="BEL-52_AA-I_1p"
FT                 /translation="MSSLEMPTHNHCKACNRPDHAEDMVACDTCGTWFHYT
FT                 CAGVQASICNRPWQCGYCSSRGDGTSSSAISVSSGSSSARLRLRQLEESKA
FT                 LDDRLLLQQAERERAFLAEKHQLEAEIQAEKHLRGSTSSFRSRNSGKSRVS
FT                 YRSEVRTWINQSTDTPAKVVNQQLGASTSTPIASSENVVLSVPDKRKVLPT
FT                 PSYDQDVVIQSPLMHHTVVQTTSMLPPKSNLQSLVAPIVSVTTSGPPMPVT
FT                 IATTSHPSAQSSSKQLRNVPHQEQQKQHPSCHNKCQLPPTIQSGPKEYTLP
FT                 GANPLESHVSAHVHSGTHIQAEEIDAQQPRMEQQNYQHFQPCGQQTGYYLT
FT                 STMNQNPSADPVPTCHAQWSRNANVTFVDSQQQFPTTNRIPVTQPIRTSQP
FT                 MRFYQPQATPFQHSSAGATRNSTSHIQSDPGYSTGHTLPGQASSFYRAGEG
FT                 ILSAQQLAARQVVSRELPKFSGDPLEWPMFINAFESTTTMCGIQPDENLSR
FT                 LQKSLIGAAREKVQSILTLPAAIPAIIETLRDECGRPDQLVHCLLVKIRLA
FT                 PPPNVNKLDTLINFGREVRNLVTFIEAANLQDHLSNPMLLTELVGKLPPSL
FT                 RLDWGLHMQRIPLVTLKAFSDYVTSIKAAACKVSLPTDCNHDESRRSKKEK
FT                 GGFINAHNVEEKKSIQTSSPKKEYQAKSEPYVVKPCPACNRSDHKLRSCDK
FT                 FAGFSMDQKQRLVDQMKLCQRCLGSHGKWPCRSKQSCDFDGCKEPHHRLLH
FT                 TSVKPMSTVQAGPSGIISAHCSRQSGVLFKVVPVILSSNGKSVSTFAFLDD
FT                 GSNVTLMEEEVAEELGLSGNISSLCIQWTSSVTRKEPTSRQVELRISSVHG
FT                 GPDYALSEVQTVPRLDLPQQSLDYEQLSKQFPHLKGLPVQSFSNAVPRILI
FT                 GLDNATLKLTLDKRERRNKEPIAAKTRLGWTIFGGGRREPQGTDHVMFHMC
FT                 NCTADETLHQLVNNYFAVETIGVNPCLPLESAEDQRARRIMEQTTKRTDSG
FT                 RFECGLLWKSDNFEFPCSYKMAERRLVCLEKKFAKDPALKMKFVDQIKEYL
FT                 ERGYAHIATGDELQHSDQRRVRYLPLGIVQNPRKPGKVRIVWDAAARVGDV
FT                 SLNSMLLVGPDLLTPLLKVICGFRQRQFVAVGDVRQMFHQLLVKQTDRQAQ
FT                 RFLFRHDPEEQPTVYIMDVVIFEASCSPCLAQHVKNTNAKEYAEAFPEAAS
FT                 AIINCTYVDDFLDSRDTVDETVRIVEEVRWIFDKAGFEIRNWQSNSEEVLR
FT                 RVGVDVDDTAKCFSVEKSTITERVLGITWDPKSDMFVFETQFRKDLYPLLS
FT                 GCIVPTKRQVLRVVMSHFDPLGLVATYTIHGKILIQDVWRSGVKWDEPITT
FT                 EDFEKWQRWVRLIPNLRQVKIPRCYFPNYSLGSYDTLELHVFVDASLMAYC
FT                 ATAYFRIMDNGSPRCALVAAKTKVTPLKPQSIPRSELCAGVIGVRLLRNIQ
FT                 ENHSIPVQKRYLWTDSTTVLAWLRADPRKFRQFVAFRIAEIQSETSVDEWH
FT                 YVPTNLNVADKGTKWGNGPCFDPESPWFSGPEFLHQLESEWPRQSTKFSEP
FT                 QEEIKAVQHHTIVRDPTIDFAKFSSWEDLVKNLSYIQHFVHRCRTSNRKAT
FT                 GTRIAVLEQKDYVAAEASVWRVVQKAEYSDEISILCKNTELTGDERKSLKK
FT                 SSSIGKLSPFLDEKGVLRMRSRINEDSVYYSSEFQNPVIVPRGKHVTNLLI
FT                 HKYHQRYAHANVDTVVNELRQRYYIPKIRFEVKKVVKQCMWCKVYRAKPVA
FT                 PKMGILPHPRVTPYVRPFTFTGLDYFGPLIVKRRRSNEKRWVALFTCLTVR
FT                 AVHVEVVHTLSAESCKMAIRRFISRRGAPQQIFSDNGTNFRGAAREIAEEM
FT                 KAINRELASMFANTEIEWVFNPPSAPHMGGVWERKVRSIKEAFKALHHKQN
FT                 LNDEELLTFLAEAEIIVNSHPLTFVPLEDSADEAITPYNFLLMSSSGANTS
FT                 SRIPVNEEVSLRINWKLMQQLLNQFWKRWIQGCLPTIARRTKWFNDVRPLQ
FT                 VDDPVIIVDESVRNGWLRGRIVKVYTASDGQVRKVDVQTVSGVFQRPAIKV
FT                 ALLDIQKSSKAALG"
XX
SQ   Sequence 6333 BP; 1794 A; 1500 C; 1543 G; 1496 T; 0 other;
     tcctcgaaaa ttattgcatc caatacgatt ccagtcggac atgagcagtt tagaaatgcc        60
     gactcacaac cactgcaagg catgcaatcg gccggaccat gccgaagaca tggttgcatg       120
     cgatacttgt ggaacttggt tccactacac ctgtgcggga gtgcaagcct ctatttgcaa       180
     taggccatgg caatgcggct actgttccag ccgaggcgat ggtaccagca gctcagcaat       240
     atcggtcagt tcaggaagct ccagcgcccg tttgcggttg agacaattag aggaatcgaa       300
     agcgcttgat gatcgtcttc tactacagca agctgaacga gaacgagcct ttctcgccga       360
     gaagcaccag ttggaagctg aaatccaagc tgaaaagcat ctcagaggca gtacgtcgag       420
     ctttagaagc cggaacagtg gcaaaagccg ggtcagctac agaagtgaag tacgaacctg       480
     gatcaatcag tcgacagata ctccagcgaa agtggtaaat cagcaattag gcgcgtcgac       540
     atcgactccc attgcctcaa gcgagaacgt tgttctgtcg gtaccagaca agcgaaaggt       600
     cttaccaaca ccgtcttacg atcaggatgt cgtcattcaa tcgcctctca tgcaccacac       660
     cgtcgttcaa accacctcta tgctgccacc aaaaagtaat ttgcaatcat tagtggcgcc       720
     catcgtgtca gtaaccacca gcggtccacc gatgccggta acaattgcta ctacaagcca       780
     tccatctgcg caatcttcct cgaagcagct tcgtaacgtt cctcatcaag aacagcagaa       840
     acaacatcca tcgtgtcaca ataaatgtca acttccaccg acaatacagt caggtccaaa       900
     ggagtacacg ttgccaggtg cgaatccatt agaaagtcac gtttctgccc atgttcatag       960
     tggaactcat atccaagcgg aggagataga tgcacagcaa cctagaatgg agcagcaaaa      1020
     ctatcaacat ttccagccgt gtggccaaca aactggctac tatttaacat caacgatgaa      1080
     ccaaaaccct tcggcagatc cagttcctac gtgccacgca cagtggtcgc gaaacgcaaa      1140
     cgtgaccttc gtggacagtc agcagcaatt tcctactact aatcgcattc ccgtcacgca      1200
     accgatcagg acttctcagc cgatgcgttt ttatcaaccg caagctacac cattccagca      1260
     ctcgagcgcc ggtgcaacta gaaacagcac atcgcatatt caatctgatc ctgggtattc      1320
     cacgggtcat acactaccag gtcaagcttc gagcttctac cgtgcaggtg aaggaatatt      1380
     gagtgcacag caattggcag cacggcaagt ggtatcacgg gagctgccta aattctcagg      1440
     tgatccccta gagtggccaa tgtttattaa cgcattcgag tccactacta ctatgtgtgg      1500
     aattcagcca gacgagaatc tctctaggct gcaaaagagt ttgataggtg ccgccaggga      1560
     gaaagtacaa agtatattga ctttgccggc ggcgatccca gcgataatcg aaacacttcg      1620
     cgacgaatgt ggtcgaccgg atcagttagt tcattgcctg ctggtgaaaa ttcgactcgc      1680
     gcctcctccc aacgtcaaca agctcgacac gctgataaat tttggcagag aagtcagaaa      1740
     cctggtgacc ttcatcgaag ctgctaatct gcaagaccac ctgtcgaatc caatgttgtt      1800
     aacagagctg gtagggaaat tacccccaag tcttcggttg gattggggtc ttcatatgca      1860
     aagaattccc ctggttacgc tcaaggcatt tagtgattac gtcacctcta ttaaagctgc      1920
     cgcttgtaaa gtctcgttgc ccactgattg caatcacgat gaaagtcgac gaagcaagaa      1980
     agagaagggt ggcttcatca atgcacacaa cgtcgaggag aagaaaagca tccagacatc      2040
     gagtccaaaa aaggagtatc aagctaaatc cgaaccgtac gtcgtcaagc cgtgcccagc      2100
     gtgcaataga agcgaccaca agctacgtag ctgcgataaa tttgctggtt tcagtatgga      2160
     ccaaaaacaa cgtctcgtgg atcaaatgaa actatgtcaa cgttgcctgg gaagccacgg      2220
     aaagtggcct tgcagatcga aacagtcctg cgatttcgac ggttgtaagg aaccccatca      2280
     tagactgctt catacatcgg tcaagcccat gagcactgtt caagcaggtc catcgggaat      2340
     tatatcagct cattgttctc gccaatccgg cgttctattc aaggtagtcc ccgtgattct      2400
     ttccagcaat ggcaaatctg tctctacctt tgcattcttg gacgacggat cgaatgtcac      2460
     gttgatggaa gaggaagtcg ctgaggaatt aggtttgagc ggaaatatca gttcgctgtg      2520
     tattcagtgg actagcagtg ttaccaggaa ggaaccaacg tcgaggcaag tggagttacg      2580
     aatttccagc gtccacggtg gcccagatta tgccctctcc gaagtgcaaa cagtacctcg      2640
     ccttgattta ccgcaacaaa gtctggatta cgaacaactc tccaagcagt ttccgcactt      2700
     aaaagggctt cctgttcaaa gcttctcgaa tgcagttcct cgaatcctta taggactaga      2760
     taatgccaca ctcaagttga cgctagacaa acgcgagcgg cgcaacaaag aacccatagc      2820
     cgccaaaacg cgacttgggt ggacaatttt tggaggtgga cgtagagaac cacaaggtac      2880
     tgatcacgtg atgttccaca tgtgtaactg tacagcagac gagacacttc accagctggt      2940
     caacaattac ttcgctgtag aaacgattgg ggtgaatccg tgtctacctt tagagtcagc      3000
     cgaagatcaa cgagctaggc ggattatgga gcagactacc aagcgaactg attccggaag      3060
     gttcgaatgc ggacttttat ggaaaagtga caactttgag tttccttgta gctacaaaat      3120
     ggctgaacgt cgtttggtct gcttggaaaa gaagtttgct aaggatccag cattaaaaat      3180
     gaagtttgta gaccagataa aagagtacct agagcgaggc tatgcacata ttgcaactgg      3240
     agacgagcta caacattctg atcaacgtcg tgtgcggtac cttcctttgg gaatcgtcca      3300
     gaacccccgc aaacctggga aagttcgcat cgtgtgggat gcagcggcac gtgttggaga      3360
     cgtatcgctc aactcgatgt tgctagtcgg gccagatctc ttgactccgt tgttgaaggt      3420
     catttgcgga ttccgacaac ggcagtttgt tgcagtaggc gatgttcggc aaatgtttca      3480
     tcagttgctg gtcaagcaaa ctgatcgaca ggctcaaaga ttcctttttc gacacgatcc      3540
     cgaggaacag cccacagtgt acatcatgga cgttgttatc tttgaagcgt catgttcccc      3600
     gtgtttagcg caacacgtta aaaataccaa tgctaaggag tatgcggagg cctttccaga      3660
     agcagcgtcg gcgattatca actgcaccta cgtagatgat tttctggata gccgagatac      3720
     cgtagatgaa actgtgcgta tagtggaaga agtacgctgg atcttcgata aggccggctt      3780
     cgagattagg aactggcagt ccaactccga agaagttctt cgacgggtcg gggttgacgt      3840
     cgatgatact gcaaagtgct tttctgtgga aaaatccaca attaccgagc gtgtcttggg      3900
     gataacatgg gatcccaaga gcgatatgtt tgtgtttgag acccaattcc gaaaagatct      3960
     ttacccgttg ctatctggct gtatcgttcc gactaaaaga caagttctcc gggtagttat      4020
     gagtcatttt gacccgcttg gactcgtagc tacttataca atacacggaa aaattctgat      4080
     tcaggacgtg tggaggtctg gcgttaaatg ggatgaacct ataacaacgg aggattttga      4140
     gaagtggcag cgatgggtga gattaattcc gaacctgcga caggttaaaa ttccgagatg      4200
     ctatttcccg aattacagtc taggcagtta cgacactctt gagctccatg tcttcgttga      4260
     tgccagctta atggcatact gcgctacagc gtacttcagg atcatggaca atggatcacc      4320
     gcgctgtgcc ttggtagcag caaagactaa agttacacct ctaaaacctc agtcgattcc      4380
     acgcagcgaa ttgtgtgccg gagtaatcgg agtgagactg cttaggaaca ttcaggagaa      4440
     ccactcaata ccagttcaaa aacgctactt gtggactgac tcaacaaccg ttcttgcatg      4500
     gttgagagca gatcctcgaa agtttcggca gtttgtagct tttcgaattg cggaaattca      4560
     atcggaaact agcgttgatg aatggcacta cgtcccaaca aatctgaacg ttgctgataa      4620
     gggcaccaaa tggggaaatg gcccatgttt cgacccggaa agcccatggt tttcaggacc      4680
     agaatttcta caccaattgg aaagcgagtg gccgcgtcag tcgaccaagt tttcggagcc      4740
     tcaagaagaa atcaaggctg tccaacatca cacgatagtt cgcgatccga ccatcgactt      4800
     tgcgaagttc tctagctggg aagatttagt gaagaacctt agctacattc aacactttgt      4860
     tcatcgttgc cgaacttcaa accgaaaagc gactggaacc aggatcgcag tattggaaca      4920
     gaaggattac gtagcagcag aggcaagtgt ttggcgagtg gtacaaaagg cggaatattc      4980
     cgacgaaatc tcaattcttt gtaagaacac tgagcttact ggtgatgaac gcaagtccct      5040
     taaaaagagc agttccatcg gaaagttgtc accatttcta gatgaaaaag gtgtactgcg      5100
     aatgcgtagt cggattaacg aagattcggt gtactactcg agcgaattcc aaaatccggt      5160
     gatagttccc agaggaaaac acgtcaccaa tctgttgatc cacaaatacc atcaacgata      5220
     tgcgcacgct aatgtcgata ccgtcgtcaa cgagttacgc cagcggtatt acatacccaa      5280
     gattcgtttt gaggtaaaga aggttgtgaa acaatgtatg tggtgcaaag tttatcgggc      5340
     gaaaccagtt gcgccaaaga tgggtattct accgcatcca agggtgacac cttacgttcg      5400
     cccatttaca ttcacgggcc tagattactt cggaccattg atcgtgaagc gacgtcgcag      5460
     caacgaaaaa cgatgggtgg cgctatttac atgtttgacc gtacgagctg tacatgttga      5520
     agttgtgcac acgttgtctg cagaatcttg taaaatggca atacggcgtt tcatatcccg      5580
     tagaggtgca ccacaacaaa tattcagcga caacggtacc aatttccggg gagcagctcg      5640
     cgagattgcc gaagagatga aagctatcaa tcgggagtta gccagcatgt tcgccaatac      5700
     agaaattgaa tgggtattca atcccccctc cgctccccac atgggtggcg tgtgggagcg      5760
     caaggtgcga tccataaaag aagcgttcaa ggcattgcac cacaaacaga acttgaacga      5820
     tgaagaactg ctgacatttt tagcggaagc tgaaataatc gtcaactcgc atcctctgac      5880
     atttgtaccg ttggaggatt cagcagacga agctattact ccttataact ttctgttgat      5940
     gagttcaagt ggtgccaata cttcatcgag aatacccgta aatgaggaag tttccctaag      6000
     aataaattgg aaactaatgc aacaactttt gaaccagttt tggaagcggt ggattcaagg      6060
     ctgcctccca actatagcac gccggaccaa gtggttcaac gatgtccgtc cgctgcaagt      6120
     tgacgatccg gtaatcatcg tagatgagtc ggttcgtaat ggttggttac gaggtcgtat      6180
     tgtgaaggtc tatacggcga gtgatggtca ggtaagaaag gttgacgtcc aaaccgtatc      6240
     aggcgtgttc cagagaccag cgatcaaagt agccctactg gacatccaga agagtagtaa      6300
     ggccgcttta gggtaaggca ttacgggtcg ggg                                   6333
//
ID   BEL-52_AA-LTR repbase;    DNA;    INV; 657 BP.
XX
AC   supercont1.337;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_AA_;
KW   BEL-52_AA-I; BEL-52_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-657
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.337; Positions  583588  584244.
XX
SQ   Sequence 657 BP; 228 A; 106 C; 109 G; 214 T; 0 other;
     tgttgcggaa tacgagtgat aggcccttta gatctgctcc acactaaggc gccgcagcgt        60
     aatactgtta agctgttgaa tgtcaaactt gacttgtcgg tgacagacct atagcaatga       120
     catcagcaaa atacgcactg aagcaagcta ttgtaaagtt aaaatttaat gaaaacacag       180
     ttctatttgc atttcttatt aactattcga tttatatact gaattcaatc gtctaaatct       240
     tctagttgag gtttgtactt ttcttagtta tctattttaa cgaatcgtgc atttgataat       300
     tatttctgaa catgcaatgt aaacatgtga tctcatgaat tattcctaaa attacagtga       360
     gtgcaataca tattatctcg cctaaaacga tcttacatcc taaattataa gctaaatagt       420
     acggatatgt aagtaaagat tgttaattga taaggattcc aacaataatt gaaattttat       480
     gtgagcagat aacttaacct aaacagctca aactggagaa taattggatt gctcggacag       540
     ttaggaaact aatttgtaag tgaattatga atttattgca ttaataagac acctaataaa       600
     actattattt ccagtcgagt tagcggaaaa accgaactgc gaaaccgttt tttaaca          657
//
ID   BEL-52_CQ-I repbase;    DNA;    INV; 6009 BP.
XX
AC   AAWU01015848;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_CQ_;
KW   BEL-52_CQ-LTR; BEL-52_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6009
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 257-257 (2011).
XX
DR   GenBank; AAWU01015848; Positions   34582   28574.
XX
CC   Positions [4989-5567] - Integrase core
CC   'CAACC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..6008
FT                 /product="BEL-52_CQ-I_1p"
FT                 /translation="MPPKAKTSLKVLQTRMKGHQTTFDNIYQFMKDWTEAV
FT                 NLTEVKVRLERLDRLWDRINECREEVESHEEYTPEALAGVQDRVTFENKYF
FT                 ELKSFLMDTIRENTEDSVLNTTSLSHQNTLPGSTPHVKLPQIALPKFTGNI
FT                 DEWHTFRDLYTSLIHFQPDLPDIEKFHYLRSQLLGRPLTIVESVRFTKANY
FT                 SLAWELLCKEYSNTKSLHRQQVQALFDLPVLRKESASELTDLLDAFERIVK
FT                 SLDQVTQPSQYKDLLLVHLLSSRLDSSTRRSWEEHSAPKDTDSAKDLTDFL
FT                 HRRVCVLKSLPTRPAEQRNETVAAKPVKKVSTVRSCNTTTQFGPKCVACSD
FT                 NHLLYTCPRFLKMSVQERDGLLRTNSLCRNCFRSDHLARDCRSRFTCRNCR
FT                 GKHHTLVCFKGKSSDPRPMTNTTTTEPTHTPMETAVDDTNTKVVNSATTST
FT                 VTCNTATGSTAGVLLLTAMVVLEDDQGHRVQARALLDSAAECNLMSRHMRK
FT                 QLMLREARSTIQVVGIQGIASKVQAKVNVTVRSRNSQFSQPMEVYVMPKLS
FT                 SQSTTAAVNTSAWNLPAGIELADPRFLESHPIDLVLGAEHFFDYFVTGRRM
FT                 QLGDNLPLLVDSVFGWVVAGRYPVDGPITSVLCDAVVSSRLDELIEKFWEY
FT                 EEVGLENNYSPDEARCEDHFVKTTQRQPSGRYQVSLPRNEELIRSLGDSKV
FT                 TAERRFFQIERRLNRDSSLRDQYVAFMEEYEALGHMRRVSPEEEGADRFYL
FT                 PHHPVVREASTTTRVRVVFDASAKTSTNLSVNDCLLSGPIIQRSLRSIILR
FT                 SRFRPIMVVADIEKMFRQVDVCPEDRRFQSILWRPTPDQPLATYEMSTVTY
FT                 GTKPAPFLATRTLVQLAADEAERYPLASAAVKEDFYMDDAITGADDPITAK
FT                 QLRVELQEMLNSGGFKLRKFASNCPEVLEGLPNEDLSIQSADGIYLDPDPM
FT                 VKTLGLIWMPHTDVFRFQFKAPPLPDTPLTKQKLFSIVASLFDPLGFIGPV
FT                 ITRAKIMMQLSWSLLDENGHKLTWTSPLPPRIEAEFRKFYEQIPRLNELRI
FT                 KRVVVMPGAVLIQLHFFSDASEKALGAVAYVRSEDSIGHILVAPLMSKSRV
FT                 APLKTQSIPKLELRGTTLAAEMYVEVMESLELCHLSPEIFFWTDSEIVLRW
FT                 LAGIPATWTTFVANRVAKIQRLTENCHWNHISGKKNPADLISRGVAPEDLL
FT                 DEPLWWEGEWLLLSMDHWPRRTVFTADGLEEERRKVVAATTADEPSFIDKY
FT                 IAHYSTYTQMVRHTAWWQRCTRNLRTPKDDRYIGPLTSAELLQAETHILQL
FT                 VQGECFARELMAIGKRECVSRSSPLRWYNPFLSRDGLLRVGGRLGNSGECE
FT                 SVKHPIVLPARHTLTKLLMRHYHLNLLHAGPQLMLSTIRLRFWPLGGRNLA
FT                 REVCHQCIVCYRTKPANIHQFMAELPTPRVVPSKPFSTTGVDYFGPIYVRP
FT                 GYRRTAVKAYVAVFVCFSTKAVHLELVTDLSTACFIQALRRFISRRGKCAK
FT                 LFSDNGTNFVGARNQLEDLFKLLRSKEHREAVSRWCADDGMQWSFIPPGAP
FT                 HFGGLWESAVRAAKVHLLKVLGDTAVSYEDMATLLCQVECCLNSRPLTQLS
FT                 DDPNDLEPLTPGHFLVTTSLQALPEEDLTNIATGRLDHRQQIQQCVQLYWK
FT                 RWRSEYLTQLQGRTKWWKPPKEIKPGSLVIIRDDNQPPTRWRMARILEVFP
FT                 GDDGVVRVVSLKTADGVIKRPVTKICILPVESTVADPVENPAENPAEAETG
FT                 ENAGTPAVPEGGR"
XX
SQ   Sequence 6009 BP; 1483 A; 1649 C; 1587 G; 1290 T; 0 other;
     ttggtccttc gaaccggatt ggtctggtcg aaggacggta ggagccaaaa tcgccatcgt        60
     gaaatcccaa accattcacg aaacggcaag gagaacgcca ttttggacgg cgtcggtacg       120
     gctcacctgt tcgaggaaat tcagcgtagt catcctacaa ggcacatttc ctatggaaat       180
     ctaggtgagt gcggtttcaa aaccttacac ccaaaaatcc agtactgctc gtggtctctg       240
     tgtcacaggt accctcgaca cacccaaccc attcatcacc acactggctg aggatcggtt       300
     agcaaagctg ctaattgatc gcaatcacca tcccacccac atcgtcggtg gcgagcgcac       360
     ggagcgtaaa tcgttcattc gttcgaaccg aactgctgaa acgccgtgcc acatccactc       420
     ctgcccatcc cattgtgctc gagacgctct attgtctcat gcccgaagca catggtcggt       480
     gctgaatcac ctgtggtcca gctgatgcgt tacgaagcga ccgctggctc tgctgcgaac       540
     gaggatcatc tttaaagatt ttacaaggct caaatcctag agccagcagg taattagcgc       600
     tccaataaac tcactccccc aagttgtgct actttggtct catttttcga ggaacaatgc       660
     cgccgaaagc gaaaacgtcg ctgaaagtcc tgcagacgcg gatgaagggg caccaaacga       720
     cgttcgacaa catctaccag ttcatgaagg attggaccga agcagtaaac ctaaccgagg       780
     taaaagtgcg actggagagg ctcgaccgtc tctgggaccg gattaacgaa tgccgagaag       840
     aagtggagtc ccacgaagag tacacccctg aagcacttgc tggtgtccaa gatcgggtaa       900
     cgtttgagaa caaatacttt gaactcaagt cgttccttat ggacacgatt cgggagaata       960
     ctgaagattc tgtgctcaat accacctcac tctcacacca aaacactcta cccggttcca      1020
     ccccccatgt caagctaccc caaatcgcac tccccaagtt cacgggtaac atcgatgaat      1080
     ggcacacatt tcgcgacttg tacacttccc tcatccactt tcaacctgac ttacccgaca      1140
     tcgaaaaatt ccactacctt cgtagtcagc tgttgggcag gccgctcacc attgttgaaa      1200
     gcgtccgatt cacgaaggcc aactactcgt tggcatggga actcctgtgc aaggaatact      1260
     ccaacaccaa atccctccac agacagcagg ttcaggccct ctttgatctc cctgtcctgc      1320
     ggaaggagtc cgcatccgag ttgaccgatt tgttggatgc cttcgagagg atcgtgaagt      1380
     cgctggacca ggtaacccaa ccctcgcagt acaaggatct gctgctcgta cacctgctca      1440
     gctcgcgctt ggatagctcc accagaagga gttgggagga acattctgca cctaaggaca      1500
     ccgacagcgc gaaggactta accgacttcc tacaccggcg tgtttgcgtt ctaaagtcac      1560
     ttcccacccg gccggctgag cagagaaacg agactgttgc agctaaaccg gtcaagaagg      1620
     tctccacggt gagaagctgt aacaccacta cccagtttgg ccctaagtgt gttgcgtgtt      1680
     cggataacca tctgctctac acatgcccac gctttctcaa gatgtctgtg caggaacgag      1740
     acggcctact gcggactaac tcactgtgcc gaaactgttt tcgcagcgat cacctagctc      1800
     gggactgcag atcgaggttt acatgtagga actgtagagg aaagcaccac acactcgttt      1860
     gcttcaaggg gaagtcaagc gacccaagac caatgaccaa caccaccacc actgaaccaa      1920
     cccacacacc catggaaaca gctgttgacg acaccaacac caaggtggtt aactcggcaa      1980
     ccacaagcac cgtgacctgc aacacagcaa ctggatcgac tgcgggagtt ttattgctca      2040
     cagcgatggt tgtattggag gacgaccagg gtcatcgagt gcaggcaagg gctcttctag      2100
     atagtgcagc ggaatgcaat ctgatgagca gacacatgag gaaacagctg atgctccggg      2160
     aggctcggag cacaattcag gtggtaggca tccaaggcat agcttccaag gtccaagcca      2220
     aggtcaacgt gactgtccgg tcacgtaact cccaattttc ccaacccatg gaagtttacg      2280
     ttatgcccaa actctcgtcc caatccacta cggctgctgt taacacttct gcttggaacc      2340
     taccagctgg aatagagtta gcagacccaa ggtttctgga atcccacccc attgatctcg      2400
     tactaggcgc agaacatttt ttcgattatt tcgttactgg acgtcgcatg cagttgggcg      2460
     acaatttacc ccttttggtc gactctgttt ttggatgggt agtcgcaggc agatacccgg      2520
     tggatggccc tattacgtct gtcctgtgcg atgctgttgt ttcgagtcga ctagacgagc      2580
     tgatcgagaa gttttgggag tacgaagagg ttggtttgga gaacaattac tcacccgatg      2640
     aagccagatg tgaggaccat tttgtcaaga ccacccaaag acaaccatct ggacggtacc      2700
     aagtttctct gccaaggaat gaggaactca tccgtagtct aggcgattcc aaggtgactg      2760
     cggaacggag gtttttccag atcgagcggc gactcaaccg ggactcgtcg ttgcgcgatc      2820
     agtacgtggc ctttatggag gaatacgagg ccttgggaca catgcggcgt gtctcaccgg      2880
     aagaggaagg tgcggaccga ttctacctcc ctcaccaccc agtcgtgcga gaagcgagca      2940
     ctaccacacg ggtccgagta gtgttcgacg cttcagccaa aacatccacc aacctgtccg      3000
     tcaacgattg cctgctgtcc ggaccgatca tccagcgaag cctacggtcc atcatcctac      3060
     gcagtcgttt ccgtccaatt atggtggtag ccgacattga gaaaatgttt cggcaggtgg      3120
     atgtctgccc ggaagacagg cggttccagt cgatcctgtg gcgcccaacc ccagaccaac      3180
     ccttggcaac ctacgaaatg tcaacggtga cctacggaac caaacctgcc ccattcctcg      3240
     cgacgagaac cctggtgcaa ctagctgctg acgaggccga acgctaccca ctggcgtcag      3300
     ctgctgtgaa ggaagacttc tacatggacg atgcgattac gggggcggac gatccaatca      3360
     ccgccaaaca acttcgtgtt gagctgcaag agatgctgaa cagtggagga ttcaagctga      3420
     ggaagtttgc gtcgaactgc ccagaggtgc tggaaggcct acccaacgaa gacttgtcga      3480
     tccaatcagc ggacggaatc taccttgacc ctgatcccat ggtgaaaact ctgggactga      3540
     tttggatgcc ccacaccgac gtcttcaggt tccagttcaa agccccaccc ttgcctgaca      3600
     ctccgctgac gaagcagaaa ctcttctcga tcgttgctag tttgtttgat ccccttggtt      3660
     ttattggccc cgtgataacc cgagcaaaaa taatgatgca gctttcttgg tcgctgttgg      3720
     atgaaaatgg ccataaactg acttggacgt caccactacc accaaggatc gaagcagagt      3780
     tcagaaagtt ctacgaacaa attccccgac tgaacgaatt gcggattaag cgtgtggtag      3840
     taatgcctgg ggctgtgcta atccaactac atttcttctc tgacgcttca gaaaaggccc      3900
     tcggagcggt tgcctacgtc aggtcggaag actcgatcgg tcacatcctt gttgccccac      3960
     tgatgtccaa atctagggtg gcacccctca aaacccaaag catcccaaaa cttgagctcc      4020
     gtggtacaac cctggcggcc gaaatgtacg tcgaggtcat ggaatccctc gaactctgcc      4080
     atctctctcc tgaaatcttc ttttggacgg attcagaaat cgttttgcgc tggctggctg      4140
     gtatccctgc gacctggaca acgtttgtcg ccaaccgagt cgctaagatc cagcgtttga      4200
     ccgagaactg ccactggaac catatttctg gaaagaagaa ccctgcagac ctcatctccc      4260
     gcggagtggc accagaggac ctactggacg agccgctgtg gtgggaaggc gaatggttac      4320
     tgctgagcat ggatcactgg ccgaggcgga cagtcttcac ggctgatgga ctggaggagg      4380
     agaggcggaa agtggtagca gcgacaacag ctgatgagcc cagcttcatc gacaagtaca      4440
     tagcacacta ctcaacctac acacagatgg tgcgccacac ggcctggtgg cagcgctgta      4500
     cacgcaacct acgaaccccc aaggatgatc gctacattgg accgttaact tcagctgaac      4560
     tactacaagc agagacccac attctacagc tggtgcaagg ggagtgtttc gctcgcgagc      4620
     tgatggcaat cggcaagcga gagtgtgttt cgcggtcatc gcccctgcgg tggtacaatc      4680
     catttctgtc gcgggatggt ctcttgaggg tagggggtag acttgggaat tcgggagagt      4740
     gtgagagtgt gaagcacccg atcgtattgc cagcacgtca cacgctgacc aagctgttga      4800
     tgcggcacta ccacttgaat cttctgcacg ctggaccaca actaatgctg agcacaatcc      4860
     gacttcgatt ttggccactt ggtggacgca acctagccag agaagtctgc caccaatgta      4920
     ttgtttgcta caggaccaag ccagcaaaca tacaccagtt catggctgaa ctaccaacac      4980
     caagagtcgt gccatccaaa cccttttcta caactggtgt cgactatttt ggaccgatct      5040
     acgtacgacc agggtaccga cggacagcag tgaaggcgta cgtggcagta ttcgtctgtt      5100
     tctccacgaa ggcggttcat ctggagttgg tgaccgacct gtcgacggcg tgttttatcc      5160
     aagcgttgcg gcggtttatt tcgcgtcgtg gaaagtgcgc caagctgttt tcggacaacg      5220
     gcacaaattt cgtgggtgcg cggaatcaac tggaggacct tttcaagctg ttgcgatcca      5280
     aggaacaccg tgaggcggtg tcgaggtggt gtgcggacga cggtatgcag tggagtttta      5340
     ttccccctgg ggccccccat tttggtgggc tttgggagag cgcggtacgg gcggcgaaag      5400
     ttcatctgct gaaggtgcta ggcgacacag ccgtgtcgta cgaagatatg gcgacgcttc      5460
     tctgccaagt ggagtgttgt ctcaattcaa ggccgctgac tcaactctcg gacgacccca      5520
     atgacctaga gcccctgacc ccagggcact tcttggtcac cacatcgttg caagcactac      5580
     ccgaggagga cctgaccaac attgcaacgg gccgattgga ccatcggcag cagatccaac      5640
     agtgtgtgca actctactgg aaacggtgga ggtcggagta cctcacacag ctgcagggaa      5700
     gaaccaagtg gtggaagccg ccgaaggaga tcaagcctgg gagtctggtg atcatacggg      5760
     acgacaatca accaccgaca cgctggcgga tggcgcgcat cctggaggtg tttccggggg      5820
     acgatggcgt ggttcgagtc gtctcgctga agacggcgga cggtgtcatc aagcgaccgg      5880
     taacgaagat ctgtatcctg ccggtggaga gtacggtcgc ggatccggtg gagaatccgg      5940
     cggagaatcc ggcggaggcg gagacaggtg agaatgctgg aactccggct gttccagagg      6000
     gggggagga                                                              6009
//
ID   BEL-52_CQ-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   AAWU01015848;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_CQ_;
KW   BEL-52_CQ-I; BEL-52_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-435
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 258-258 (2011).
XX
DR   GenBank; AAWU01015848; Positions   28573   28139.
XX
SQ   Sequence 435 BP; 139 A; 112 C; 80 G; 104 T; 0 other;
     tgttggagac caacccgatc acatcttccc agtagcttgt gctcacgggc atggctacca        60
     accattttta tctaaacgaa aaattcttgt agatctaaaa caaaagcgac tagcgcggca       120
     agaagtggct tcaagccgaa gaatgttata ttccccccat tccaatttga cccatcttac       180
     gagcagtgcg aaaaaggaaa attatttgac tagaattaat aaaacttaaa ttagtgatac       240
     gtctctttaa ataaagtact agttttacta gttttgtggt ttcaattaaa catcgcgagt       300
     ttttgtgcta caccaaccgg gtccgacgat cactagtgcc aacccacggc aaaccctcca       360
     acccgaaccg cagaaggacc tgcgattccc caaacgacca gccaatccgg agcgaccaca       420
     acgagctatc gaaca                                                        435
//
ID   BEL-52_DTa-I repbase;    DNA;    INV; 5566 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   16-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5566
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5652-5652 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identity to consensus.
XX
SQ   Sequence 5566 BP; 1380 A; 1286 C; 1326 G; 1574 T; 0 other;
     ttggtgaccc cgacgtgatt cgtacaaaaa caatattaag tgcaaatcac ataaataagt        60
     ctatttattg acttttcgtt gttgcggctg cggtgcattg gcggagccag aaatcatttg       120
     tcgaaaaaat aaagccttga atgcagtgag cgctataaat aaatagcatt tttgtgttgc       180
     cgaaatttgc ataaaaatta gttatatatt ggagcgtaca tagccaatta acgggccgtt       240
     atttcttcgt ttgctttgcg ctcatcttcc cgctgaaacc gaatttcggg catttcgtct       300
     gcttgtgccg ttgttgttgt tgtagccatg cctacgggaa ttgctggaga tgctaccgct       360
     gatgaaaaca gggtgatatt tttaaagcgc aaggcaactg ctttatttaa tagagtggag       420
     cgtttagtgg attccctttc aagtgcggcg ttaacttcat gcgacgaatc cgggctccac       480
     gtgaggttgg agctgattga tgagcttcaa ggaacattta aaaaggttct tggtgagctc       540
     gaagaattgg atttcgagga aattgaaagt gatttgagtg aaaaatttga tgacattctc       600
     gtacttttga agtcatctgt tcgatccgaa atttcaaagc gcgcctcaca gctcctttcg       660
     cactcaactc ttgctgacgg catcactccc ggagctttcg gcctccagca gcgtcagcct       720
     cgacataggg caacattact gcctccactt gagcttccaa aattcgctgg aggttatgca       780
     aattggtctg atttttattc tatgtttacc actatcatag atagtcaccc tgatctcacc       840
     aacatagaaa agctgcagca tctacgatca tgcctgaggg atactgcgtt ggaaactatt       900
     cgctcgctgg aaatttcgga cggcaactac gcaattgctt tggatttact gcaaaataga       960
     tttgataatc gtcgtttggt ttttcaggca cacattactg agatcctggg aataaaggcg      1020
     gtgcagagtg gttccgtttc gacacttcgg gagctgtcgg ataaattcaa cgctcatatc      1080
     cgcgctctta aggggctggg cacgacggaa caaattgcag gatgcatcat cgtccaaatc      1140
     ctgttccaaa aattggatcc ggcaagtcag gccaagtggg aagagcgttt agaggaccct      1200
     gccttcgtca acttaattcc tacttgggag tcaatggcat catttctgga gcagcggtgc      1260
     aggacgttgg agacgatgga ttttgccatg gcaaactatg cgccgggcat tcaggtggga      1320
     agtaacagaa tacccaatac gcgtagatca gcatttgttg cctcgaattc gaacccttgg      1380
     atctgtatat tctgtaatga tgcaggtcac tccatttctt attgccagaa ttttaaagcc      1440
     ctgtctccta cgaataggct tcaagaagca aaacggctct gtctttgcat aaattgtctt      1500
     aaggttggtc atcaagttag gcagtgcaat tccagtaatt gtcgtgcatg cggatcgaag      1560
     catcacaccc tgcttcacat gggaaactta gcttcccttt cttcacaaga aggagcacct      1620
     cttcaagaag caattccgtc tgcatcacca tctgcactgc cttccacctc gactgctctc      1680
     attgcacagg attttagtaa tgatattgtg ctcttagcaa cggcaagcgt attagtaaaa      1740
     aaccgctccg gagttttcgt tccctgtcga gttctactcg actctggctc ccagctgcat      1800
     ctaataacgt cccgattcgc aagccagctt caagtaaaga agataaaatc tttagcatct      1860
     gttactggaa taggagattc cagttttgtg acggatggtc attcggttaa tattacggtt      1920
     cggtcccgaa cttccgatta ctcagccaac attaccgcgg tgattgctcc gaacatcaca      1980
     gagcggcagc ctagcttcaa tgtcgacatc ggcaattgga aaatacctaa aaatattcag      2040
     ttagcggacc ccagttttta tactccccag cgggtggacc ttttaatcgg agccagcctc      2100
     ttttacgaga tgttatgcgt tggccaaatt aagcttccac atggattacc cctacttcaa      2160
     aagactcgtc tgggttgggt tgtttctgga ggttatggcc tctccaatgg ctcgtcctta      2220
     ttgtcgtctc aagagttacc cctcgctagc agggagaata gtttcgatcg gttagatgat      2280
     cttcttcgac gattttggga agtggaaagc tgcgccgagc caatcatacg cgctactaag      2340
     gaagaattgg actgtgaagc acatttcgta agacacgttg ttcgtttgcc agctggggat      2400
     tattctgttc gtttacctgc caagctcaat ctagacctct tgggagagtc ctaccagcaa      2460
     gcttatcgaa gattcttgtc cctagagaga aagctaaatc gtcagccagc cttgaaggct      2520
     caatatggag cattcataaa ggaatacctc gatctaggac atatgtcatc agtgtctgcc      2580
     tctgacagcg ggttgtgccg atacttcttg cctcatcatt gcgtcataaa ggaagatagc      2640
     tccaccacaa agctccgcgt agtttttgat ggatcggcgg ccagctcctc agggtattct      2700
     ctcaacgatg ttcttatggc aggccctgta attcagcata agctgttcca gattcttctt      2760
     cggtttcgtt cacacccggt agcaatcaca ggagacatct gcaaaatgta ccgctgtgtt      2820
     agggttcagc ctgaggacag ctatttgcaa tgcattttgt ggagggattc cccccaggat      2880
     caattgcggg tgtttaagct agacaccgtt acctatggca cgaagccagc atcatttctg      2940
     gctgtgcgag ctatgcatca gctgtcagca gacgagcata cagcgtttcc gcttggggct      3000
     gaggtcattc gtcgcgattt ttatgtggat gatttgatat ctggagccaa atccaaggaa      3060
     gaagcaatca tcattatgga tcaaacatca aaacttctag ccaagggaaa atttaagctt      3120
     agaaagtggt gctcgaatgt gtcagctgtt ttggagggag ttgcagacaa ggataaggag      3180
     tcttatttga agtttgatga tggaactgat tttgcaaaaa ccctaggtct cgcttgggat      3240
     ccagtttctg accaattact gttttccttt tcggtcttac agtcagcatc aagaccttgc      3300
     aggcgatctg tcctgtctgc aatagcgcga ttttacgatc ccctcgggtt ggttggacct      3360
     gtgatcacaa aatcgaaaat attccttcaa caactgtgca aggagaagtt atcctgggat      3420
     gaaagcctcc cggagtcaca gaatacggaa tggagtgcta tatgcacgag ttttgggcaa      3480
     attaagcatg cgtcatttcc tcggctggtt ctttctccaa actctgagag tgagattcat      3540
     ggattttgtg atgccagcat agaagcatat ggtgcctgtg tctacatcgt ttgcaacggc      3600
     cgatctcaat tgctttgctc aaagtcaagg gtagccccct taaaaacact cactgtgccc      3660
     aagctggagc tttgtggggc tgaactcctg tctagactca tcgcggaagt tgctgggact      3720
     aaggcatttg agggaaggtt atactgctgg agcgactctg ctgttgcgct ttcatggatc      3780
     cgagacgagc cctccaggtt caacattttt gtagcgaacc gagtagctgc cattcaagag      3840
     ctaactgagt cagtagagtg gcgatatgtt ccaacttctt taaatccagc tgacattctc      3900
     tcccgaggtg cttttcctgc tgagcttaat gactctcctt tgtgggcgca tggaccaaaa      3960
     ttcctttgtg gccccaaagc tgactggccg gccccaatca ttgctgaaag accaacgctt      4020
     gaggttcgcc gaaagatttt actaataaaa tctccatacg aagacatagt ggctaattca      4080
     aaatttgcca attccttcgc cgcccttcaa agagttttcg gatacgtcta caagtttagt      4140
     aatcgcatcc gtcgccctac gctcacggtg tctgaccttc aaggcggtac tcggctgttg      4200
     cttcgtctgg tccagcgctc acatttatgg gacgacatca aatcgttgca gtcaaaggga      4260
     ttggtgcacc catccagctc tatcgcatct ctttcgccat ttgttgatca atttgggatt      4320
     cttagagtgg acggccggct aaagaattct tcgctggatt ttaatgggcg ccatccaatt      4380
     attttaccac ggagtcattc ggtcactgct gccattatta ctcactttca cgaaagcaat      4440
     ctgcacactg gaccacgggc gctactcggc ataattcgat cccaatattg gcctattggg      4500
     gggaggaaga cggtgatgaa ggcagtaaac aaatgtatta gatgctatcg aatgaagcct      4560
     cgactagtgg agcatataat ggcggatctt ccaaaggaac gactcgatgg atctcatgca      4620
     ttcgaagtca ctggcattga cttttgcgga ccatttctct acaagtcaga agtgcgaagt      4680
     aagcctccag taaaatgcta cgtttgtgtc ttcatttgtt tcgccacaaa agctattcat      4740
     ttggagttga ttaaggatct ctctacagtg tcatttctac atggccttaa acgatttata      4800
     tgcactagaa gaaagccacg gcagatttgg tctgataatg caacaaactt tgtcggcgct      4860
     cgcaatgaat tgctcgaact aaggcgccta ttcctcagca atgatcatca gaaagctaca      4920
     ttggactttt gcctggcgga ggccattgat tggtgtttca ttcctcctag gtcgcctcac      4980
     tttggcggtc tttgggaagc ggctgtgaag atcgctaagc atcattttta ccgcgttgtt      5040
     ggcactgctg ttttagcctt tgaggagttg cggaccttgg tgtgtcacat ttcggcggtt      5100
     gttaattctc gaccattagt ctcgatttca gaaaaccccg ctgatctgga tgtgttaacc      5160
     ccagcacatt ttttgaatgg tggtccgcct tcatctttcg tcgagccaga tgtgaccagt      5220
     ctcaacttca atcgcttgga tggatggcaa cgcgtggcct acttgcagca gatcttttgg      5280
     tcccgatgga aggaagaata cctaacactt ctgcagcagc gctccaagtg gcgcaccccc      5340
     aaaccgggcc tggttgtcga tgacttagtt ctggtcaagg acgaaaactt gcctcccatg      5400
     aagtggcccc tcgccagagt gattgagctg ctgttcggtg gagatggcgt tgctcgagtt      5460
     gccgttctga agacagcctc aggagtgaca aagcgagcag tgaacaagct atgtctgctg      5520
     ccccttaagg atgatgttga aacccaggct tccaacgggg ggagta                     5566
//
ID   BEL-52_DTa-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   16-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-52_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-300
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5672-5672 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identity to consensus.
XX
SQ   Sequence 300 BP; 79 A; 73 C; 46 G; 102 T; 0 other;
     tgtcgggtca cgcagccgca gcagctaatt aacttgtaaa tccgtactct tatatcaatt        60
     gcatcacgaa aggcatctct ctctatttat ctctcccatt tgttgtatgc ttgcattttg       120
     ggcccagcat tcggctggct ggcccttcgt aaattcagta tgaattctga tctcgccata       180
     aaacgcattc tcgtctcgcc tgctgtactc tttcgataat aaattgttaa caagcataaa       240
     ccaacccaat tttcttattt tcgtttgcat taactaataa aaaagcttat tagttcaaca       300
//
ID   BEL-53_AA-I repbase;    DNA;    INV; 5659 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_AA_;
KW   BEL-53_AA-LTR; BEL-53_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5659
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions  378811  384469.
XX
CC   Positions [4681-5262] - Integrase core
CC   'GTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           226..5658
FT                 /product="BEL-53_AA-I_1p"
FT                 /translation="MWRKLVGQEDDEKLESSHVENTEKDTPNTKQQKRKLK
FT                 MAEQELKSLITKRGQVKGKVTRIWNAIQTDPGQELTISQQQLRVHARNIEK
FT                 YYTEYNEVNDRIISLVPDKQVEVHEGKLIEFEDIYNNTLVVIETLLDAHAT
FT                 AVQQENPQSGSVAAGKPQYVIHQQSLKAPLPTFNGKYENWPKFKSMFVDLM
FT                 RNSPDSDAIKLFHLEKALVGEAEGILDAKTIQDNNYQQAWRILEERYENKR
FT                 RIIDIHIEGILQLKKVEKKSSRELRELINECTRHVENLRFHDQELTGVSEL
FT                 IVVHILASCLDNETRELWESTIEHGELPEYEETVEFLKKRCLVLERCETSK
FT                 SVISSAKPVVSKGSTSMKSSTKVSAAVSTTSEIVCELCGGSHLNFKCSAFR
FT                 SMSVSQRYAKAKQANVCFNCLRKGHRSAACTSERSCSKCSAKHHGMLHPEE
FT                 ESSRSLPPPKQEDKANVSAVQATGPLVQSGAVEPTSSVPVESNTRNSASVT
FT                 TSCYNGGMLQSTKQVFLQTAIIDVVDKHGRLHPCRTLLDSGSQAHILSESM
FT                 ARVLELPFTKCNVMVVGANAVKTQARKGMIIEFSSRYSNYKDRIECLVSDR
FT                 PTGTIPGATINVTEWNIPDGIQLADPRFYEPHEVDLILASNYVWDLLRMNT
FT                 VTLVNGTTSLRETDLGWIVTGTFDPYAQVSQSILLSNVTLQEPLHDAIEKF
FT                 WTVEEIGDSSPNTNEEMEVEAHFLETYRRDETGRFVVKMPFKDIVSELDDN
FT                 RELALKRFHQLERRLSRNPELKRQYTAFIEEYEALGHCKEVYEKDDVPGKG
FT                 SYYLPHHAVLKPSSSSTKLRVVFNASSKSGRYSLNEVLKIGPTVQSDLFSV
FT                 LLRFRCYLYAFSGDVTKMYRQIGIDASQTAFLRIFWRKHPADPIRVLELAT
FT                 VTYGTSSAPYLATRCLVQLAEEEAERYPVASEMVKKDVYVDDLLSGAATQE
FT                 EAIERQREVTELLAEGGFPIRKWCSNSPAVLKNVPEENQEKLIKIQECGEA
FT                 TKALGVLWDPREDKLLFGIECKQEESDKITKRYVLSTIAKLFDPLGLVSPV
FT                 VVLAKMLLQKLWACQLNWDEELEGDILQEWKNFQRSMPTLTKISVPRCVLS
FT                 SGVVRLELHGFADASLLAYGACVYLRCLGEGDLITTSLLCAKSRVAPLKGI
FT                 TIPRMELLAALLLSRLVSKVATIVQINVSATVLWSDSQIVLAWLKRAPGTL
FT                 EVFVRNRVVQINNLTASCTWKYVRTTENPADIVSRGQMPLLLSVNKLWWQG
FT                 PVFLQQSEYVVEEPPPVPENEIPEIKTLVISDSICVEEMLPVFTRYSDFRK
FT                 LQRVIAYVRRFIFNCRSRVINQPKIVSKYLTVPEMRQALKYIVMVIQMMEL
FT                 PEEVRAAERGEPSKRFAGLSPFMDRDKLLRVGRRLENANLPFESKHQLILP
FT                 PHPVTEALIRTLHVENMHVGPTGLLAIVRRQFWLLRGRSAVRKIIRRCLNC
FT                 FRTKPSRIQQLMGSLPDERVNVSAPFEYTGVDYAGPVTVKQGKYRPKLVKG
FT                 YIAVFVCLATKNIHLELVSELTTEAFIAALERFVNRRGLVRKMFSDNGTNF
FT                 VGASRELRQLYQQLHDDVQSQGINNLLLPRDIEWHFIPPKAPNFGGLWEAG
FT                 VKSTKTHLKRTFQNAVLTFEEFATALTHVEAILNSRPLFSLNDNPDDPMPI
FT                 TPAHLQIGRPLQSVSKPTCLDVPVNRLSRWRYLDRLKEHFWGRWSREYLTT
FT                 LQTRSKWTSRESNVQPGMVVLLIEDNLPPQTWTMGIILKTYAGRDSLVRVV
FT                 DVKTSSGIFKRPISKLAPLPIEDNDYLQESSKSASQPRGR"
XX
SQ   Sequence 5659 BP; 1596 A; 1225 C; 1460 G; 1378 T; 0 other;
     ttggtccatt cgatccggat gagttccgga caagagcgtt tcacgaggct ccaacatcgt        60
     gaatctcgtc gagtcgcaaa gtatcgtagt gcattgaccg cagcgcgagt gcaagaagcg       120
     tcgtgtttgg gttaagtgcc gccattttgt cgagaaattt ccaaagcgtg gagattcctc       180
     ggtgaaaatt ccagaaagca gttccgttag catcccgtgg ttcctatgtg gcgaaagctt       240
     gtgggtcaag aagacgatga gaagctggag tcatcccatg tagagaacac cgagaaagat       300
     actccgaaca caaagcagca aaagaggaaa ttaaaaatgg ctgaacaaga gctgaagtca       360
     ctcatcacca agcgtggcca ggttaaaggg aaagttaccc gaatctggaa cgctatccag       420
     actgatccag gacaggagct gacaatctcc cagcagcagc tacgagtcca cgcaagaaat       480
     atcgagaagt actacaccga gtacaacgag gtcaacgacc ggatcatttc gctggtcccg       540
     gataagcaag tggaagttca cgaaggaaag ctgatcgagt tcgaagacat ctacaacaac       600
     acactggtgg tcatcgaaac gcttctggat gctcacgcta cagcagttca gcaggagaac       660
     ccacagagtg gttcggtcgc tgctggcaaa ccacagtatg tgattcacca gcaatctttg       720
     aaggcgcctt tgcccacttt caacgggaaa tatgaaaact ggccgaagtt taaatcaatg       780
     ttcgttgact tgatgagaaa ctcgccagat tccgatgcta ttaaattatt ccacctggag       840
     aaggccctag taggcgaggc tgaaggtatc ctggacgcca agaccatcca ggacaataac       900
     taccagcagg cctggaggat cctggaggaa cgatacgaaa acaagcgacg aatcatcgac       960
     atccatattg aaggtatttt gcagctgaag aaagttgaga agaaatcatc cagagagcta      1020
     agagaactaa ttaatgagtg tacaaggcat gtcgagaacc tgcggttcca tgatcaagag      1080
     cttacaggtg tgtccgagtt gattgtggtg cacattctcg cttcgtgttt ggacaatgaa      1140
     acccgtgaat tgtgggaaag taccattgaa catggcgagc tgccggaata tgaagaaaca      1200
     gtggagttct tgaagaaaag gtgtcttgtt cttgagcgtt gtgaaacgag taaatcagtg      1260
     atatcatctg ccaagccggt agtttccaaa ggatcgacgt caatgaagag ttccactaaa      1320
     gtgtccgctg cagtatcaac aaccagtgaa attgtttgtg agctatgtgg tggatctcat      1380
     ttgaacttta agtgcagtgc atttcgaagc atgagtgtca gtcaaagata tgcaaaagcg      1440
     aagcaagcaa atgtgtgctt caactgtctg cggaaaggac atcgtagtgc tgcatgtaca      1500
     tctgagcgaa gttgttccaa gtgtagtgcc aagcatcacg gaatgttgca tccagaggaa      1560
     gaatcatctc gatcgttgcc gccacctaag caggaagata aagcaaatgt tagtgctgtg      1620
     caagccactg gtccactggt gcagtcaggt gctgttgaac cgaccagttc cgtaccagta      1680
     gagtcaaaca ccaggaatag tgcgtcggta acaacgtcgt gctacaacgg aggaatgctc      1740
     cagtcaacta aacaggtatt tctgcaaaca gccattattg acgtagtgga caagcatggg      1800
     cggctgcatc cgtgccgcac gttgctggat tccggctcac aggctcatat tctgtcggag      1860
     tccatggcac gagtcctgga attgccgttt acaaaatgca acgtcatggt tgttggagca      1920
     aatgctgtga aaactcaggc tagaaagggg atgattatag aattttcgtc ccgatactcg      1980
     aactacaagg accgtattga gtgtttggtc tcagatcgtc caaccggaac gatacctgga      2040
     gcaacaatca acgtgacaga atggaacatc cccgacggaa tacagctcgc ggatccacgt      2100
     ttctacgagc cacacgaggt tgatcttatt ttggcatcaa attacgtttg ggacctgctg      2160
     cgaatgaata ctgtgacatt agtcaacggt actacttcac ttcgagaaac agacttggga      2220
     tggatcgtaa ctggtacgtt tgatccttat gctcaggtga gtcaatccat tttactttcc      2280
     aacgttactt tgcaagaacc cttgcacgat gccattgaga aattttggac ggtcgaagaa      2340
     ataggcgact cttcgccaaa caccaatgaa gaaatggaag ttgaagcaca ctttttagaa      2400
     acgtatcgcc gagatgaaac cggcaggttt gttgtcaaaa tgcctttcaa ggatatcgtc      2460
     agtgagctag acgacaatcg tgaacttgcc ctcaaaaggt ttcatcagct tgaaaggaga      2520
     ctgtcgcgga atccggaatt aaagcggcag tacacagcat tcatcgaaga atatgaggca      2580
     cttggacact gcaaagaggt ttacgagaaa gacgacgtac ccggcaaagg aagttattac      2640
     ttaccgcacc atgcggtcct gaaaccatcc agttcgtcga caaagttgag ggtggtcttc      2700
     aatgccagtt caaaatctgg ccgatattcg ctaaacgagg tattgaagat cggcccgact      2760
     gtgcagagtg acctgttctc tgtccttctt cgatttcgct gctacttgta tgccttttcg      2820
     ggtgacgtaa ccaaaatgta taggcagatt ggtatagacg ccagccaaac tgcttttttg      2880
     agaattttct ggagaaagca tcctgcggat cctattcgag tacttgaact ggcaacggtc      2940
     acatatggaa catcgtcggc tccctatctg gcaactaggt gcttggttca attggcagaa      3000
     gaggaagcag aacggtatcc ggttgcgtcc gaaatggtca aaaaggatgt gtacgtggat      3060
     gacttgctgt caggtgccgc aacgcaagaa gaagccatcg aacgccaacg tgaagtgacg      3120
     gagcttctag cagaaggagg attccccata agaaagtggt gctcgaattc gccagcagtg      3180
     ttaaaaaacg tacctgaaga aaatcaagaa aaactaatta aaattcaaga gtgtggtgaa      3240
     gcaacaaagg cattgggtgt attgtgggat ccacgagaag acaaattgct ttttggcatt      3300
     gagtgcaaac aagaagaaag tgataagatt acgaaaagat atgtactttc gaccattgcg      3360
     aaactgttcg acccgttggg cttagtgtca ccggtggtag tgttagctaa aatgttgttg      3420
     caaaagttgt gggcatgtca attgaactgg gacgaagagt tggagggaga tattctccaa      3480
     gagtggaaga attttcagcg ctcaatgcct acacttacca aaatcagtgt gccgcggtgt      3540
     gtcttgagta gtggcgtcgt gcgcttggag ctccatggat ttgcggatgc ctcactcctt      3600
     gcgtacggtg catgtgtata cttacggtgc ctaggagaag gcgacttgat aactacgagt      3660
     ttactgtgtg caaaatcaag agtcgctccg ttgaagggca ttaccattcc gaggatggag      3720
     cttcttgcgg ctcttttgct atcccgcctc gtttccaagg tggcaaccat cgtccagata      3780
     aatgtgtccg ctactgtgtt atggtccgat agccaaattg tactggcatg gttgaaacga      3840
     gcacccggaa cccttgaggt gttcgttcgt aatcgggtgg tacagatcaa caatctcact      3900
     gctagttgta cgtggaagta tgtgagaacc actgaaaacc ctgccgatat tgtatcacgt      3960
     gggcaaatgc cattactgtt gagtgtgaac aagctgtggt ggcagggacc agtgtttctg      4020
     caacaatcgg agtacgtggt agaggaaccc ccaccggttc cagaaaatga gattccggag      4080
     attaagaccc tggttatatc agattccatt tgcgttgaag agatgctgcc ggtcttcacc      4140
     agatacagtg attttcggaa actgcaacga gtgattgcgt atgtgcgtag attcattttc      4200
     aattgtcgaa gccgcgtcat caatcaacca aagatcgtat cgaaatacct cactgttcct      4260
     gaaatgagac aagcgttgaa gtatatcgtt atggtgatcc aaatgatgga gttgccagaa      4320
     gaagtaagag ctgctgagag aggtgaaccg tcgaagcgtt ttgccggttt gagccccttc      4380
     atggaccgtg acaagttgtt gagagtgggg aggcgtttgg aaaatgccaa cctgccattc      4440
     gagtcaaagc atcagttgat actgccgccg catcctgtga ctgaagcact gatccggacc      4500
     ctccacgtag aaaatatgca cgttgggccg accggactgc ttgcaattgt tcgtcggcaa      4560
     ttttggttac tgcgtggccg atctgcggtt cgaaaaatta ttcgtcggtg cttgaactgt      4620
     ttccgaacca aaccatcgag gatccagcag ctaatgggta gtctacccga tgaacgagta      4680
     aacgtctccg cacctttcga gtacactgga gtcgattatg cgggccctgt aacagtaaag      4740
     caaggtaaat atcgtccgaa actggtcaaa ggttatattg ccgtttttgt atgcttggcg      4800
     acaaaaaata tacatttgga gttagtgtcc gaactaacga cagaagcgtt catagctgcg      4860
     ttggaacgct tcgtgaaccg tcgaggattg gtgcgaaaaa tgttctctga taacggaaca      4920
     aatttcgtgg gagcgtcacg tgagcttcgt cagttgtacc agcagctcca tgatgatgta      4980
     caatctcaag gtataaacaa tttgttgttg ccaagagaca tcgagtggca ttttatccct      5040
     cccaaggcac caaattttgg tggcctttgg gaggctgggg tgaaaagcac caaaactcac      5100
     ctgaaaagaa ctttccagaa tgcagttctt acttttgaag agtttgccac tgccttgaca      5160
     cacgttgagg ctattttgaa ttcacgtcca ctgttcagct tgaacgacaa tccagacgat      5220
     ccgatgccaa ttactccagc tcatctacaa atcggcagac cgttgcagag tgtttcaaag      5280
     cctacctgtc ttgatgttcc ggtgaatcgt ctatcgaggt ggagatattt ggataggctg      5340
     aaagagcact tctggggccg atggtcacgg gagtacttga caacgcttca aacccgtagt      5400
     aaatggacat caagggaatc caacgttcag ccaggaatgg ttgtgcttct gattgaggac      5460
     aatcttccgc cgcaaacctg gactatggga ataattttga aaacgtacgc aggaagagat      5520
     tcacttgtac gagtcgtgga cgtgaaaact tcttcaggga ttttcaaacg gccaatctcg      5580
     aagctggctc cgctaccaat tgaagacaac gactacctcc aggaaagttc gaagtcagct      5640
     tcgcagccgc ggggcagga                                                   5659
//
ID   BEL-53_AA-LTR repbase;    DNA;    INV; 357 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_AA_;
KW   BEL-53_AA-I; BEL-53_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-357
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions  378454  378810.
XX
SQ   Sequence 357 BP; 110 A; 70 C; 71 G; 106 T; 0 other;
     tgttcgatgg aaacccatct tcaagcttcg gtgatttgaa gtaaatgaaa atttgctgca        60
     aaaccagcag cacggttgct gcgatgaatt ttggttttac cagtggcggt gcgtaccatg       120
     atggacgaac gtgacggaag cgtaccagtg gcaccaacaa gaagaaaaaa aaacttttgc       180
     tctattcttt gcatcattcc attcgctttt tcattctttc gagagcagtg aacgcaaaca       240
     catgtaaagt caatttttat tcattaaatc gttttgagtt gaaaaacaat gtgttagtta       300
     ttccacaaac aatattacag tccattattt cgccgatcaa gtgaattggc cgcaaca          357
//
ID   BEL-53_CQ-I repbase;    DNA;    INV; 2350 BP.
XX
AC   AAWU01015731;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_CQ_;
KW   BEL-53_CQ-LTR; BEL-53_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2350
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 259-259 (2011).
XX
DR   GenBank; AAWU01015731; Positions   17592   19941.
XX
CC   'AAGGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..2283
FT                 /product="BEL-53_CQ-I_1p"
FT                 /translation="MMLRTPKGGRKKTPKKKTPAKSDKNGDAQKSDTQEVK
FT                 VVPVTPISKQLEEQRRKEEARKMEEQQKVLMRQRDAVAEKLDRVKAAIKSS
FT                 TEQLNQNLKNLHFLKLQLKTVEACYGEFNAFQNQIYGLALTPEQEKLHRAC
FT                 YLKFETLHNILTVQLNELIERLSKPSVALVPAAPACAVVPQYLPPLSVPLP
FT                 KFDGTYENWFSFKCMFRSVMDRYQGEAPSMKLYHLRNSLVGRVEGVIDQDI
FT                 INNNDYEAAWALLVETYEDKRVIIDKHIEALFNLPKITNDDAVAFRKLIDT
FT                 CVKHIEALKNLQLPVDGLGEQMLMNLLAARMDKETRLAWESQWKAGELPTY
FT                 AATIAYLKEKCRVLEVVEQCSVTVEKVTPHRSVAMLIAGTQKCSVCNRQHG
FT                 LNGCEQFKGKSVNEKYSHLRKCGLCFNCLRRGHRVAACTSTNTCKICGNRH
FT                 HTMLHTGGVKKQMVVPISTAPVTSKPMDKRRTRPARKQTLLSTAVVLVDGG
FT                 SSGPHLCRALIDSGSQNHFVTERFADKLAIKKERADYQVSGLHDFKTRISS
FT                 LIRATVKSRVGDFSTELELLVTPSIIDDLPPESIYITSWNLPPNIKLADPG
FT                 FNSASPIDMLLGAELFWNLIRSGRITLAETMPSLRETELGWVVGGVLKH"
XX
SQ   Sequence 2350 BP; 603 A; 559 C; 739 G; 449 T; 0 other;
     ttctggtcct gcacgagccg gatgctgaag tagtggtccg ggagtgacgg ttgacggatt        60
     tcgacgggaa atccgacttt gaacacggtc gacgtgtccg tgtgtgcgcg tgtgtgagac       120
     gtcgaggggc gtagcaccca cgccgcgaaa aagtgcgcga tccgacagtc agtgctttgg       180
     aagaccggga agtgctccgg aagatcggaa aaaggttccg aaagactgga ctagtggtcc       240
     ggaagtgacg gagaaatccg attcgttcgc gtgattgacg ttagcgcgtg tgagagtgtt       300
     tgtgggacgt cgaggcgtag caccacctag cgacgggcat ggatgatgtt gagaacgccc       360
     aaaggtggta ggaagaagac gccaaagaag aaaacccccg cgaaaagtga caagaacggt       420
     gacgctcaaa agagcgatac gcaagaagtg aaagtggttc cggttacgcc gatcagcaag       480
     cagcttgagg aacagcgccg gaaggaggaa gctcggaaga tggaagagca gcagaaagtg       540
     ctgatgcggc agcgggacgc ggtggcggaa aagctggacc gagtaaaagc agccatcaag       600
     tcgagcaccg agcaactgaa ccagaacttg aagaacctgc acttcctgaa gttgcagttg       660
     aagacggtag aggcctgcta cggtgagttc aatgcattcc agaaccagat ctacggactg       720
     gcactcactc cggagcagga gaagctgcac cgggcgtgct acttaaaatt cgagacgctt       780
     cacaacattt tgacggttca gctcaacgag ttgatcgaac ggctttcaaa gccaagcgtc       840
     gcgctcgttc cggccgcccc cgcgtgtgca gttgtgccgc agtacttgcc gccgctcagt       900
     gtgcccttgc cgaagttcga cggcacttac gagaactggt tttcgttcaa gtgcatgttc       960
     aggagcgtga tggaccggta ccagggtgag gctccgtcga tgaagctgta ccatctacgg      1020
     aactcgttgg tcggcagggt agaaggcgtg atcgaccaag acatcatcaa caacaacgac      1080
     tacgaggcag cgtgggctct cttggtggaa acatacgagg acaagcgagt gataatcgac      1140
     aagcacatcg aagctttgtt caatctgccg aagatcacaa atgacgacgc cgtcgctttc      1200
     cggaaattga ttgacacgtg cgtcaagcac atcgaagcgt tgaagaatct tcaacttcct      1260
     gtcgacggat tgggtgagca gatgctgatg aacctgcttg cagcacggat ggacaaggag      1320
     acgcggttgg cgtgggaatc gcaatggaag gccggcgagc taccgacgta cgcggccacg      1380
     atcgcgtacc taaaggagaa gtgccgagtt ctggaggtgg tggaacagtg cagtgtgacg      1440
     gtggaaaaag tgacgccgca cagatcagta gcgatgctga tagctggtac gcagaagtgt      1500
     tccgtatgca accggcaaca cggcttgaac gggtgcgagc agttcaaggg aaaatccgtc      1560
     aacgagaagt acagccattt gcggaaatgt gggttgtgct tcaactgttt gaggagagga      1620
     catcgcgtgg cagcatgtac gtctacgaac acctgcaaga tctgtggcaa tcggcatcac      1680
     acaatgctgc acactggtgg agtgaagaag cagatggtcg ttccgatctc gacggcgcca      1740
     gttacgtcga agccaatgga caaacgccgc actcgacctg ccaggaaaca gacccttctc      1800
     tcgaccgccg tagtactcgt cgacggtgga agcagcggcc cgcacttgtg tcgagcgctg      1860
     atagactcgg gatcgcaaaa ccacttcgtc acggaacggt ttgccgacaa actggcgatc      1920
     aagaaggagc gcgccgacta ccaggtcagt ggtttgcacg actttaagac gaggatcagc      1980
     agcctgatcc gagcgacggt taagtctcgc gttggcgatt tctcgaccga gctggagctg      2040
     ttagtcactc cgagtataat tgatgacctg ccgccggaat cgatctacat cacaagctgg      2100
     aacttaccac cgaacatcaa gctcgctgat ccggggttca attcggcaag cccaatcgat      2160
     atgctgctgg gagcagaatt gttttggaac ctgataaggt caggtaggat cacgctggcg      2220
     gagaccatgc cctcgctcag ggaaactgag ttgggatggg ttgtcggcgg tgtgttgaag      2280
     cattgaagcg gcagaggagc aggaagcgag gatggaggtt tgaaatgcag tcatttcaac      2340
     gtggggagga                                                             2350
//
ID   BEL-53_CQ-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   AAWU01015731;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_CQ_;
KW   BEL-53_CQ-I; BEL-53_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-228
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 260-260 (2011).
XX
DR   GenBank; AAWU01015731; Positions   17364   17591.
XX
SQ   Sequence 228 BP; 83 A; 39 C; 51 G; 55 T; 0 other;
     tgttggacga gttgggaaat gaagtgcacc ttctgtgcaa aactttggtt tgttttcata        60
     gcgtgtaaat tttccgtgta cattcaaatg acacaaataa taaagaaaca gagtttagcg       120
     tgtaacagaa aaggcaagac gcgcgcgttt ttactcgatc cgttcgcgga aagaaaaaat       180
     ccgaaaaatc gagaaaaata cagtccactc gaagtaaaac gggaaaca                    228
//
ID   BEL-53_DTa-I repbase;    DNA;    INV; 5306 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   16-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5306
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are ~97% identity to
CC   each other.
XX
SQ   Sequence 5306 BP; 1442 A; 1418 C; 1135 G; 1311 T; 0 other;
     ttttggcgac cgtgacagga ctttgctagt tttgagtggt ttttgtatga gttgaggtta        60
     agttctctgc tactgtattt cgctcccaat tgccgctcgc gcattgttaa gtagtccgcc       120
     tacgcgcaac atattggtgc ttcgctgccc caccgctgct cagcgccaca ctcatcaaca       180
     cttcgtcgtt ggagtcgtca ccccgtcctc caagtctatc aacacctcgt cgttggagtc       240
     gacaccctgt cctccaagtc tatcatcacc tcgtcggtgg agtcgacacc ccgtcctcca       300
     agtctatcaa cacttcgtcg ttggagtcga cagcagtcct ccagatctat caggccaaag       360
     ttggggtcga cattcggtcc tccatcttca catcgtactc ggcggacaca gcagccacca       420
     atctcggaca taacctcgat cttcacatcg cgtgttcgca tccgccagca tattgcataa       480
     caagcttggc gagccaaaac tttccactac atatcgtcat ctctttcgca ctctcatacg       540
     tgtgtgtgtg cattctgtcc acggcgttgc cagaccaact catcacataa ctggaacgtg       600
     gaacttacaa catgcctacc atcgaacaac ttgaagcgca ttgtgtggac gctcacagga       660
     atctttccag aattagccag tcagtgaacc ctagtttcaa cctttcgccg ttggaactga       720
     cgtgccgtat gacgattctg ctactcaaaa ctcgcattgt cgatacaaga aaatcgcttc       780
     gtgattctcg tcgtgaaata gaagagctgt tcatccacac caaagtctct attcaggagc       840
     agctcggact agatgcaaac agcaccgcga ttcatgaaac cacggttaat gtcggtcata       900
     cgtcagcagt caaactacca cgtatgtcac tgccaatatt cgacggtaaa tattccgagt       960
     atcagaactt tatcacatca ttcaaccaag tcgtagcgaa ccagttaagc ctgtctaaaa      1020
     ttgagaagtt caaccagctg ttgaactgcc taagagggcc agctctggaa acagttcgag      1080
     ctttctaggt tactcccgac aactacacaa aggcgcttga gcgcctgaga aaccgctatg      1140
     ataaccctac gcttgttttt ctcgacaaca tatcatcatt gctcgcattg caacctgccg      1200
     ccaagtccaa cgggcagcag ctgcgttata caactctttg cgatctctgg gcactgaatc      1260
     gcagatctcg caggccagct catttccata gtcatgggca aggtcgatca ggagaccaag      1320
     aggaagtgga acgaatcact cggtattacc ttcgtgggac agatgcgttc aaatcgtgga      1380
     acggcactgt caatatttag catctgccga cgccttcgtg agccagccag gtggccccaa      1440
     gcctcgcacg cagaggaacc catcaagttt gtctttcaac tgtacaaccc acaaacttgc      1500
     aacatgtgtt caagcacaga ccgcaagata tttagatgtc ccgatctaat gaagcttacg      1560
     ccggacagtc gcttagataa agtgaagcgc cttcggcttt gcatcaattg cctcaataag      1620
     ggccatcatg tagccaaatg ccgatctatt ccgagatgcc gcatatgttt atcagcgcat      1680
     cattcatttc ttcatcgaca cgttcctgaa tccgttgcac aaaatgcgct gcagcccaga      1740
     acagacacat cgcagtcact catacccaca ctgatactag ttctgatcac actgatcata      1800
     ctcgccacgg cattagtatt ggtaaagaac gcatctggat gctacaagga aggacgagcc      1860
     ctactggatt cctgttccca ggcgaacttc atttcggaag agttcgccca gaagctgcga      1920
     ttgcctcgga acaaacgcaa catggagatt cgcagcatcg gggacacaca aacgcaaatt      1980
     aagcatctta cagctaccac agttaaatct cgaaaaaatg attttgagtt tttccatcaa      2040
     tatttttcaa tcgtagatgt ggacgacgtc attcacaaaa acttggagcg cttatgacgc      2100
     attgatgagg tgaagaactc gttaaatacg ctgacaccag aacaacagaa atgtgaagaa      2160
     ttttacaaca aaactgtccg acgtaccgga gacggtcgga taatggtacg actaccattc      2220
     aaggacgaac ccagtctgct cggctcctcc tacgacaccg ctaaaagaag atttctcgct      2280
     ctcgaacgaa gccttaaccg taagcctgag gtcaaggcca agtacattga gttcatgcag      2340
     gagttcgaag ccttgggcca catgagcttg gtaggccacc caaacctcaa tacttcacat      2400
     ttcaacattc cgcaccactg agtgctcaag cccagcagca catcgactaa gctgagacgc      2460
     ctcttgtcag acaacatctc agaaatccct taacgatcta ctaatggtgg gaccgaccat      2520
     tcagccagat ctctacacat tgctccttcg ttttcgtata tatcagtaag caatcactgc      2580
     tgatgtggtc aaaatatttc gtcaggtgaa ggtatctgca gaggaccgga gataccagta      2640
     catcatttgg agaaattcgc aatcagagcc actgcgcacc cttgaactga atacggtcac      2700
     ttatggcact gcggccgcac cgtatttagc catacgcagc atggcttacc ttgcagatca      2760
     acacatcgac aactataagc tcggagctag agccattaaa tcatcgttct acgttaatga      2820
     cttccttggt ggagcagaca cagaaatgga acttcatcaa attaacgagg aagtcacagc      2880
     tatcctaaaa gacggccaat ttgaactcgc taaatggcat tcaaatcaca gtaagtttgt      2940
     gaaagacgat accatcaaac tgttaaattt agatgagggc aaggtcacca gacacttggt      3000
     ctaaaatggg atcaagattt ggacatattc atattcacgt tttcgcctat aaccacctct      3060
     gaccttgtta ccaagcgtac tattctgtca atagcgtcct cgctgttcga cccattggga      3120
     ttagtagcac caattatatt agttgccaaa atcatccttc aagaactgtg gttattaaaa      3180
     ctgcactggg atgagtccgt tccgcaaggc atccataccg cttggacatc gctccttcaa      3240
     tcgctcacgt ctttagaatc tgtagccatc ccacgatact gtctccaact ggcgacatgc      3300
     tctctggaga tacatggatt ctgcgacgca tctatcaggg cgtactgctg ctgcgtctac      3360
     gctcggacac ttggatcaga tggtctcatc aaagtccaac tcataacatc caagtccaga      3420
     gttgctccaa ccaagaaact ttcgctgcct aagttggaac tctgtggggc acatctgctc      3480
     tcacaactct attggaaaat cgcaggaatc ttcgcggaca gagagccaac catatacttg      3540
     tggtgtgact cccaaatcgt cctacactgg aatcgccagc actcagccac gttgtcaacc      3600
     ttcgtcggca atcgaatttc ggaaattcag gaatcaacag cagattgtca ttggagacac      3660
     gttccaacac actgcaaccc ggcagatcta ctcaccagag gctgtacagt tgctgatctg      3720
     caaacctcga tatggtttca gggacctgca tttttacgga gagatcagca tcattggcca      3780
     aaggacaata aggaagacat cgacatggag gttgtgcaac tggagacaag gaaatcagcc      3840
     ttcgtcgtac gcaccgtcaa taacccactg ctctcaggaa ttcgtaaatt cagctcgtat      3900
     tttcgctgtc ttcttgttgt tgcctggatg tacagatttt cggatcgcag ccgtaaaggg      3960
     ttcctgactc agtcgctatc gccgaacccc acagagttgc agcgggcatt acactgcatc      4020
     gtgtggaaca tccaaaccga gcactttcat aaagaaacat cgttgctgca caagggccat      4080
     cctcttcgta ataacctaaa tttgtaacct tagttttttt atacaggtta tatactgatg      4140
     gcttcgagct tctaagggtt gaagggcgtc tgcaacttgc aaactaccca gaaagcaccc      4200
     aattcttcta cccagaaagg atcacttcgt agacttattc gttcgtcatc tccatctcca      4260
     aaactatcac gctggaccaa aggcccttgt cgcactaatc cgtcagcact tttgggtagt      4320
     gaacgcgaga gatttggcac gacaagtcgt tcgctcatgc gtactttgcg ttcgctatcg      4380
     accaactctg gaaactcaat taatggttca gctacccaag gaacgcatta cgccgtctcg      4440
     gccgttctca agatgcagaa tcgacttctg cgggccggtc aacgtctacc tgcgcatccg      4500
     cggaaaaccc cccagcaagg cttacttagc cgtttttatt tgctttgcca caaaggcaat      4560
     acacgtggag gtggtatcgg atcttaccac agacagcttc ataacagccc tcaaacgctt      4620
     gattgcccga cgtggactcc catccgacat cttctgcgat aacgctacga atttcgcagg      4680
     ggccaacaac aaactagagt cgctgaagca gttccttttt aagggtgaaa ctgttaattc      4740
     gatcatcaat ttttgtaata tgcaatttat taacttccaa cttatatggg aggcggcagt      4800
     caaaagtgtc aaaggactac tcaatcgcac actccgagat actaggctca cctttgaaga      4860
     gctacctact gcagccgcgg acgttaaggc gatcttaaat tctcgcccct tgactccgct      4920
     atcgtcggat ccaagcgatt tgggagcgct gacgcctgga cacttcctgg tgggagacgc      4980
     gctccgagca ttaccggaac ttgcaatagc cgacgacaat ttcgacagtc tggatcgatg      5040
     gcagaaggtc agcgctatta agcagcgcat atggagacgc tggagccagg agtatatcaa      5100
     cgagctacag acccgcaaaa attggacgaa gacagctcca aacctagaac tcaacgacat      5160
     ggtcatagtc catgaggata accttcctcc acaacgttgg ctacttggat gtagaggcgt      5220
     agaggaatta tacgccgacc tattcggtaa ttagcattac taccagtctc ttgaaagtca      5280
     atcgcatact ttcaaggggg gcggta                                           5306
//
ID   BEL-53_DTa-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   16-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-53_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-286
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5673-5673 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 286 BP; 98 A; 50 C; 49 G; 89 T; 0 other;
     tgttgggtca aagcccaatt gcccttgtca ttaattactt tgtaatttaa atcttgcgcc        60
     gattcttgat agttatcata aatcgataag aaatgtgatg ctgccaactc gaccgcaaga       120
     aagagagaag atagaaatga aaaaatatgg aattttttgt tctattattg taaccttcgc       180
     acgaggaagt caagtgcatt gaatttacct gaactcatta aagatattca taaactagca       240
     ccgtccgact ttaaattata ttcaaggaaa agcccttgtt tcaaca                      286
//
ID   BEL-54_AA-I repbase;    DNA;    INV; 7557 BP.
XX
AC   supercont1.270;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_AA_;
KW   BEL-54_AA-LTR; BEL-54_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7557
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.270; Positions  659961  667517.
XX
CC   Positions [5163-5744] - Integrase core
CC   'GCATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           807..5990
FT                 /product="BEL-54_AA-I_1p"
FT                 /translation="MGEARTREQLMTRRTTLIASLSRTERFVEDYVAERDG
FT                 LEVQIRLDSLDLLWQSLEEVQTALEDLEETNEGKALNLQYRASFEPRLFRI
FT                 KARLKSILPPPLILQANVPVEPPPRAVSTLTGLKLPTISIPEFDGDYMQWL
FT                 TFFDTFKALIHDNQDLPPIQKFHYLRSAVKGEPAQVIETIGISAANYPLAW
FT                 QALVTRYSNEYLLKKRHLQDLLNIPRMKKETAAALHSTVDEFQRHIKILQQ
FT                 LGEPTPAWSTLLEHLLCMRLHDDTIRAWEDHAETVNDQSYTCLVEFLEKRI
FT                 RVLDSVSVNHSSSPSTPPVVPNGNHRRQMPIKTSSYVTTENSAPKCHACDQ
FT                 QHPLVKCPTFEKMTLAERLRTVNSKRLCLNCFRQDHYARDCPSNFTCRVCK
FT                 KNHHTLLHPGQLPSNTKTNSEGSPAVSQSNQRTNQHPTSSSRAQSRVSMQM
FT                 VTKVEEPTVVQCNNVLRNPQPTVFMLTVLVRIVDVYGKEHFARALLDSASQ
FT                 PNLISDRLAQLLNLKRTKVNVIIDGIGEKPEHATDSVRTNVHSRKGNFSRD
FT                 VTFLVLKRMISNLPAEDIPVDDWKLPNDISLADPNFNRSSKIDLVIGAQHF
FT                 FDCFPTAARIKLSEGLPDLIDSVFGWIVAGGTNLAANQESVCYKTVATSLS
FT                 PLEQSMERFWKIEEVGTRPALSVEEKACEELFQSTVSRNDDGRYIVELPKQ
FT                 PNFAEMIGESEAAAIRRFELIERRFSKDPKLKLEYDKFMAEYLSLGHMKPI
FT                 PNGTAPGVVECFLPHHPVIKESSTTTKTRVVFDGSSKTSSGFSLNQALCVG
FT                 PTVQDELLDLVIRNRKFPVAMAADVEKMYRQVLVHPKDTPLQKIKYRFKST
FT                 EPLQSYELLTVTYGLAPSSFLATRALQQLANDEGHAYPLAAPVLKKSFYVD
FT                 DFIGGANSIVEAIKLREELTELLSKGGFPLRKWISNKLEVLQGLPADQIGT
FT                 QSTYRFDPGETVKTLGITWEPESDQFLFDFHVNQRDQTATKRVILSRISQL
FT                 FDPLGLIAPVVVKGKMLIQKLWVIECSWDEKVPSEIRREWENLYDQLPLLS
FT                 KFRIDRYAFQPNSTIQLHSFADASESAYGACVYARSVDAEGNIRVQLLAAK
FT                 SRVAPLQRLSITKLELCAAVIAAQLHSRVVEALQMNIDESFFWSDSTVTLQ
FT                 WLRSPPSSWKTFVANRVSEVQTLTHGSHWSHVSGLQNPADLVSRGMDVGEF
FT                 VESTLWKQGPNWLQLSRENWPRCNATEVPDADEERRGVVVSVARILPSYNP
FT                 IFSRYSSFNRLSRVVALCQKFVQNLRSKSRTQPSTTSPAKFQPLSVEQLIQ
FT                 AKTTLVRLAQADCFQEELRELQQGRPLPKKSPVRLLAPFVDTEGVLRVGGR
FT                 LKLSEQPYLSKHPVLLPSFHPLAQLIAKFYHYKLIHGGGHVTLSVMREEYW
FT                 PINGRRLVRSIIRNCFQCARANPVPASQQIGQLPAQRVTVSRPFEITGVDY
FT                 AGPLYLKAIHKRADPAKVYICLFVCFATKAVHLELVGDLSTPAFISALRRF
FT                 VARRGRPRHLHSDNGKNFIGAKNDLHHLYKMLSDDAQVDRITRFCAEEEIV
FT                 WHLNPPKAPHFGGLWEAAVKVAKKHLHRQLGNSRLSIEDLSTVLAEIEAAM
FT                 NSRPLVPMTEDPNDFTVLTPAHFIIGSTMHAVPSPNVTDIHFTRLNHHQKL
FT                 QQLYQCFWHQWRTEYLQELQKNTRLRQPNHQILPGKLVVIVDEFQHPVRWP
FT                 LARIEAVH"
XX
SQ   Sequence 7557 BP; 2045 A; 1929 C; 1640 G; 1943 T; 0 other;
     caattttggt gccgtgacca ggatcgtggg cttcgccgct ttcgccatct tccacgcacg        60
     ccatcccacc ggatcgaaga gctattgttt cgacaccaac ctagtcgaac gttgccgcca       120
     tagagcatac tgaaggacgc catccaacct aacaaaggga ccctattgtt aatcaactgc       180
     atgttgttga cgccattgcg ccatccttgg ttcctgagct gatttcttga ttgattcaag       240
     gcaaattgaa tcattgatca ggtaaagtac ctgtccaatc cctgcgcatc tcctcacggg       300
     tgcctttaga tctccctttc tccaattttg catgctgatc gtcggtggag ctgtgcacgt       360
     gtcatccctt tcatcaagcc gactggtaat ctaacaacag tggttcccga caccaatcgc       420
     ctaccgccca cggtggcggc cgttttgctt ggtgcagcta cacagtgaag gaagtctgcg       480
     catcccaacc caaccaaaga aagtttgcga atatcgatcg tgagacgatt ggtatcgccc       540
     ctatccacag acccatccgt gaaacgaaag ccatttttcc aaacgacaaa gacaattcct       600
     cgttagacaa gtcaccccta gtgccgtata ggcagagatt gttcctgcgt tccagttttg       660
     aataaaatac aaggcatatt caagccttgg ttcaggttag taaccttcca agcatttcat       720
     tttcgtttgt ccgggtctac ctggtctttc atatcggcag gcattctcca ctccaacttc       780
     actcttcgac gtcaccgcga gcaacgatgg gtgaggctcg tacccgagaa caactgatga       840
     cgcgaaggac aacgctaatc gcgtcgctga gtcgcactga acggttcgtc gaggactacg       900
     tcgccgaacg ggatgggctt gaggtacaaa tacgactgga cagccttgac ctgctgtggc       960
     aatcgctgga ggaggtacag acggctttgg aggatctaga ggagaccaac gaaggtaagg      1020
     ctttgaacct acaatatcga gcctcctttg aacccaggct attccgaata aaagccaggc      1080
     tgaaatcaat tctaccgccc ccgctcattt tgcaagccaa tgtccctgtt gaaccccctc      1140
     cgcgcgctgt gtccaccttg accggtttga agttgccaac aatttccata ccagagtttg      1200
     acggtgatta tatgcagtgg ttgaccttct tcgacacctt caaggcattg atccacgaca      1260
     atcaggacct tcctccgatc cagaagttcc actatctccg tagtgcggtg aagggagaac      1320
     ccgcgcaggt catcgaaact attggcatca gtgccgccaa ctatcctcta gcatggcagg      1380
     cgctggtcac tcgttattcc aacgagtatt tgcttaagaa gcgccacctg caggacctgt      1440
     tgaacattcc tcggatgaag aaggagacgg ccgctgctct tcattcaact gtagatgagt      1500
     tccaaagaca catcaaaatc ttacagcagt taggagaacc aaccccggcg tggagcaccc      1560
     tgttagagca tctattgtgc atgcggctac acgatgacac gattcgcgcg tgggaggacc      1620
     acgcagaaac cgtcaacgac cagtcctata cgtgccttgt ggaatttttg gaaaagcgga      1680
     tccgagttct cgactcggtt tcagtcaacc attcctcctc tccctcgact ccaccagtgg      1740
     ttcccaacgg aaaccatcgc agacagatgc ccattaaaac atcttcgtat gttaccactg      1800
     agaattccgc cccaaaatgc catgcatgtg atcagcagca tccgttggtg aagtgcccaa      1860
     cttttgaaaa gatgaccctt gctgagcgcc ttcgcacggt taattccaaa aggttgtgcc      1920
     ttaattgctt ccgccaagac cattacgcac gtgactgccc ttccaatttc acgtgtcgag      1980
     tttgcaagaa aaaccaccac acccttctcc acccaggcca gcttcctagt aacaccaaaa      2040
     cgaatagcga aggttccccg gcagtttcac agtccaacca acggacaaat caacatccaa      2100
     cgtcgtcgtc cagagcgcaa tcaagagtct cgatgcagat ggtgacaaaa gtagaggaac      2160
     ctaccgtcgt tcaatgcaac aatgtgcttc gaaatcctca gccaacggtt tttatgctga      2220
     ccgtcttggt ccgtatcgtc gacgtctacg ggaaagaaca ctttgccaga gccctactgg      2280
     acagcgcttc gcaacccaat ttgatatcgg accgactggc ccaactttta aatttgaaac      2340
     gcactaaagt gaatgttatc atcgacggaa ttggcgaaaa accagaacat gccaccgatt      2400
     cggttagaac caatgtccat tcccgtaagg ggaacttctc cagagatgta acgttcctag      2460
     ttctcaaacg gatgatatcc aaccttcctg cagaggacat tccagtagac gattggaaac      2520
     tcccgaacga catttcgctt gccgatccta acttcaaccg ctccagcaag atcgatttgg      2580
     tgatcggagc tcagcacttc ttcgactgtt tcccaacagc agcgcgaatc aagttgtccg      2640
     aaggacttcc agacttaatt gacagcgttt tcggttggat agttgctggc ggcaccaatc      2700
     ttgctgctaa ccaagaatcc gtctgctaca aaactgttgc cacttccctt tcccctttag      2760
     aacaaagcat ggaacgattt tggaagatag aggaggttgg aactcgaccc gccttgtcag      2820
     tggaggaaaa ggcatgcgag gagttgttcc agtccaccgt ttcccgtaac gacgatggca      2880
     gatatattgt tgagttgccc aagcagccaa attttgcaga aatgattgga gaatccgagg      2940
     cggcggccat tcgccgtttt gagttgattg agcgcagatt ttccaaagat cccaagttga      3000
     agttagagta cgataaattc atggcggaat acttatcgct cggacacatg aagcctattc      3060
     ccaatggtac tgcccccgga gtcgtagaat gctttcttcc tcatcacccg gtcattaaag      3120
     agtccagtac taccaccaaa acccgggttg tcttcgacgg ttccagcaaa acctcgtccg      3180
     gattctcttt aaatcaggct ctttgtgtag ggccgaccgt gcaggacgag ttgctggatc      3240
     ttgtcatccg aaaccgcaaa tttccagtag ccatggcagc agatgttgaa aaaatgtacc      3300
     gtcaggttct ggtacacccg aaggacacgc ctttgcagaa aatcaagtac cgcttcaaat      3360
     ccaccgaacc tctccagtca tacgagctcc tcaccgtcac atacggtctt gcaccgtctt      3420
     ctttcctggc tactcgagca ctgcagcagc tagccaacga tgaaggacat gcgtatcctc      3480
     tcgctgctcc tgttttgaaa aagtccttct atgttgacga cttcatcgga ggcgcgaatt      3540
     ccattgttga agccatcaaa ctgcgcgaag aattgaccga gctgctgtct aaaggtggat      3600
     ttccgttgag gaagtggatc tcaaataaac tagaagtgtt gcaaggactc cctgctgacc      3660
     agattggaac ccagtcaaca taccgatttg accctggaga aactgtgaaa acccttggca      3720
     ttacgtggga gcctgagtcc gaccaatttc tgtttgactt tcatgtcaac cagcgtgatc      3780
     aaacggcaac aaaacgagtg atcctatcca gaatttccca gttattcgac ccgctagggt      3840
     tgatagcacc agtcgttgtt aagggaaaaa tgctaattca gaagctatgg gtgattgagt      3900
     gttcctggga tgagaaggta ccaagtgaaa ttagacggga atgggaaaat ctgtacgacc      3960
     aacttcctct tctgtccaag ttccgtatcg atcgatacgc ttttcaacca aactccacaa      4020
     tccagttaca ctcgtttgca gacgcttccg agtccgccta cggggcctgc gtttacgctc      4080
     gcagtgtaga cgccgaagga aatattcgtg ttcagctttt ggcagctaaa tcccgagtcg      4140
     ctcctttgca gaggctgtcc attaccaaac tagaactatg cgccgctgtt atcgctgcac      4200
     agctgcattc ccgagttgta gaagccctgc agatgaacat cgatgaatcc tttttctggt      4260
     ccgactcaac ggtgacccta cagtggctaa gatctcctcc cagttcgtgg aaaacttttg      4320
     ttgctaatcg cgtgtctgaa gtgcaaacat taacccatgg atcccactgg agtcacgttt      4380
     ctggccttca aaacccggca gacctcgttt ccagaggtat ggatgttgga gagtttgtgg      4440
     agagtacttt atggaaacaa ggtccgaatt ggttgcagct ttcgagggaa aactggccac      4500
     gatgtaatgc tacagaagtt cccgatgccg atgaagaacg cagaggagtt gtagtttccg      4560
     tcgcacgaat tttgccgtcg tataacccaa tattctcaag atactcctcg ttcaatcgcc      4620
     tatcaagagt cgtcgccctt tgccagaagt tcgtccaaaa cctaaggtcc aagtctagaa      4680
     ctcaaccaag cactacaagc cctgccaaat tccagccact gtcggtcgag caacttattc      4740
     aagccaaaac tactctggtt cgactggccc aagccgattg tttccaagaa gaactgcgag      4800
     aacttcagca aggtcgtccg cttcccaaga aatctccagt cagattgctg gctccgtttg      4860
     ttgacacaga gggggttctt agagtggggg ggcggttaaa attatcggaa cagccatacc      4920
     tatccaagca cccagtcctg ctccctagct ttcatcctct agcccagctg attgccaaat      4980
     tctaccacta caaacttatt cacggtggcg gccacgtgac tttgtcagtc atgcgtgaag      5040
     agtactggcc gataaacgga cgacgacttg tgcgaagcat catcagaaac tgtttccaat      5100
     gcgcccgagc caatcccgtt ccggcaagcc aacagatagg acagctgcca gcccagcgag      5160
     taactgtcag cagaccgttc gaaatcaccg gagtggatta tgcggggcct ctctacctaa      5220
     aggccatcca caagcgagct gatccagcaa aagtctacat ttgcctgttc gtgtgcttcg      5280
     cgacgaaagc ggtgcacttg gagttggtag gcgacctctc cacaccagct ttcatctccg      5340
     cccttcgtcg atttgtcgcc cgccgaggac gtccccgtca cctgcattcc gacaacggga      5400
     agaatttcat cggcgccaag aacgatctgc accatctgta taagatgctc tccgacgatg      5460
     cccaggttga ccggattact aggttctgcg ctgaagaaga gattgtctgg catctaaacc      5520
     cgccgaaggc ccctcatttc ggcgggctct gggaagccgc cgtcaaggtg gcgaaaaagc      5580
     atctccatcg tcaacttggc aactccaggc tgtccattga agacctctcg acagtccttg      5640
     cagaaataga agccgctatg aattcacgac cccttgtgcc tatgactgag gacccgaatg      5700
     actttaccgt tcttacaccg gcacacttca tcattgggtc aacgatgcat gctgtaccaa      5760
     gcccaaacgt taccgatatc cacttcacgc ggctgaacca tcatcagaag ttacaacaac      5820
     tttaccagtg cttctggcat caatggagaa ccgagtatct tcaggagctc caaaagaaca      5880
     ctcgactgcg tcagcccaac catcaaatac tgcctggaaa actggtggta attgtcgacg      5940
     agtttcaaca tcccgttcgt tggcccctag cccgcataga ggctgtacac tagacctatt      6000
     catttgtctg gaaattttcc agtcaaccaa ttctttgatt ttttatgaca aaatgaactt      6060
     ctggtcaaaa tttcagtcat tttggaaata atttaggtgt gcttcaaatc aattatgtgt      6120
     ttctgagcta atttcaagct tgaaaaattc ataactttcg aacggaacac caaaaatgat      6180
     tgaaaatacc tctacatagt agttgattca attctacgaa cttttgtcga acacactttt      6240
     atgattggag caagttttaa catagtttgg ttgagatttg tgcttcaagt ttcttgaaaa      6300
     tcactatttt tatggaattt tctctctgaa aaacacacct gtttggaaat tacggatttt      6360
     taatttccag tacatgatga ctttacatgt ctcaaactca atcccgattt aagttacaac      6420
     ttatcttgcg gaaataaatt ataaaaaaaa tagaaaatta ggaagcactt ttataaatcc      6480
     gctttgggtg agccaagagc accaccgtga gctttggcgg gtgtaaaaaa tgaacacatt      6540
     agcactgctt ttttcagtcg atgacgatga ttgttttcaa atcgttctga atcgtcaatg      6600
     aaatgcgatc caaacaatca tcactcggaa agaaaaagca atgctaacat gttcaattca      6660
     ttcattggtc ggtacatgtg tcatgcgtga attaactatc atcaggttgc gatgcggtgt      6720
     tcgatctttg ggcatttttt gtaatttttt gcctaaagca acatgtaagc tgttaatggc      6780
     taatgaattc attgatttat ttcgttcgat tcctgttgac taggtactga aaaactaatg      6840
     tcaatgtgtg ttttttctac cgtatatatt cagaaaactg tgatttttgg gtactatgca      6900
     gaacaaatca tgatcaaaca atgttaaaac tcaatgtaat cttatttgcg tgttcgacaa      6960
     acttaaacag aatagaatta gctttcaaat agaggtaatg acaagtggtt ttgattttcc      7020
     acatgctagt tattattttt caaaccttga aattagccct aaaacacatt tttaacttga      7080
     agcatactga aatctgtatc aaattagctg aaaatttgac cagacattct tcttagtagg      7140
     agaattcagg atactgcttg accggtagat ttccagacat tttttcaaat atgaacaggt      7200
     ctactgtaca cccaggagcg gacggtcttg tgcgcgtggt tacattgcgc acagccaaag      7260
     gcattttcaa gcggcccatc acgaaaattt gcctgctgcc aacggactca tcaacccaag      7320
     caaacacaac gtacctgcaa caaacccaaa cattagacga tcacaaccag caaactggca      7380
     acgacgatca tcatgcaaac aacggataga tcatcaagct tctgacccca ataatctgac      7440
     caagtgtagt acataagaaa aaattgctaa aatgaattat tttcgattgt gtaagctaag      7500
     ccatgaattg aaaatttgtt taattttgaa aatctcagtt ttcaaaggtg gcggcga         7557
//
ID   BEL-54_AA-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   supercont1.270;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_AA_;
KW   BEL-54_AA-I; BEL-54_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-396
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.270; Positions  659565  659960.
XX
SQ   Sequence 396 BP; 100 A; 90 C; 84 G; 122 T; 0 other;
     tgttggattt cgatgttatt tgccgtatat atagttagcc aacaccttgt ggagagattt        60
     ctctcgtttg aaagtagctc tcattttctc tccccagctt cagatgctgt gcggtatcta       120
     gctcatagat tgtaactacg ctcgtcagtt gcactgttag ccatcaaccc gatcagttat       180
     aatatagaag tgtttgaaga acaactcgct ttcaatctcg ctttcgattt attgtgtagt       240
     gcgtcgtatc acatttgctc tggcttggca gaatcagcct tccgcgaaaa ttaaaaccaa       300
     gccggagcgt aaccactgag gatttgatac cccggaaagc ttgactgttt cttagtgtga       360
     gatacagata aaggtgagcc cagacctgcc ccaaca                                 396
//
ID   BEL-54_CQ-I repbase;    DNA;    INV; 4075 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_CQ_;
KW   BEL-54_CQ-LTR; BEL-54_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4075
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 261-261 (2011).
XX
DR   [2] (Consensus)
XX
CC   'CCATG' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           834..2336
FT                 /product="BEL-54_CQ-I_1p"
FT                 /translation="MAPNLRELEKQQSHLRRTLEAIQQFVNAYDATRDADQ
FT                 VDVRLELLDETFNQFRFVRIKIELLTEEDDLDVEVVEGETEEERAEREADA
FT                 NKKRKEKNVKVLMEAEDFYCAVKAKLNKKRGPLETVPPVLVPSAVDARPAV
FT                 GLSHVKLPDINLPIYTGELSEWIVFRDTYRSLIHNNAQLSDFDKFTYLRSS
FT                 LLGEALLEIAGIDVSAVNYDVAWTTLEQRYDNKKLIVKAHLDALIAVESMK
FT                 QESYAALNQLIGSFDKHLMMLKKIGQDTDIWSTLLVHMVCSRLDGNTLRLW
FT                 ETHHKSKEVPKFQDQMKYLRGHCLVLQSVAPSKPNAEEEKQRRLSVSHAVT
FT                 HSVNKCPFCNELFHSPFHCLLFLKKTVDERMEAARRRNLCLNCLRAGHSTR
FT                 SCTRGSCHHCHQYHNSLLHINAVPERPSASQALTRPTPEQQQYQQQQPQYQ
FT                 SMGQQQPQIQPSIQNQSSNTAQSNTHSQNTQQLSTTEQCTNHNTTTLSISS
FT                 HNRKN"
XX
SQ   Sequence 4075 BP; 981 A; 1035 C; 1058 G; 1000 T; 1 other;
     ttttggtcct tcggcatccg gattgcgaac gttttttgga ccatccactc gttcgcgacc        60
     tgtgacccgt ggagaagaaa acggattcgt gaagtgcact tacgtgcgtg ctgtgcgaaa       120
     gaacttttac tgtgcgtgct gaaaagtgcc aaaaactctg tgttgtgacc tgtgagctgc       180
     tgtacgagag gtcggtgacc tgaacggacg gttcagtgac cccggccatc gctgtgttgt       240
     tcctttgtgc gattggaacc gtacaacatc atcgccatcg cggatcggga cttggcgcgc       300
     tgctgattcg gtgcgatggt ggacttctgc aggtgttacg actacaattg gagccgctga       360
     agatcggcca tcgtgaagtg gtcgttcctg aacaccgtcg tgctgcgcgc tggaagctgt       420
     tcctgatcct ggacctgctg ttcgagattt gctgtttctg ttgggaagta gttgcatgat       480
     acggttggtt gtgggcttgc atgtggacat ttctgtgttg ctgagtgtgt ttggagaaat       540
     aaaacgaaat taaacagatc tgcatgtgag tttcttccac tctgtggaca tttcctgagc       600
     cctggttctt ccttctgttg gacggttggt cttggattcc gctggtgttc cgccgttggt       660
     tgtctgctcg gttggttccc ctcgctgctg tctgtctggt cggtcgctgt caattcgcgt       720
     gggcgttgag tgagctgtga tttggagttc tgtgcagtgc agtcagtgat ctacctgtga       780
     agcgggttag ctgtgatcag tggtgtgatt tgtagtcgcc gtgagtgttc gacatggcgc       840
     ctaatttacg cgagttggaa aagcagcaga gtcacctgcg gagaacccta gaagccattc       900
     agcagtttgt gaatgcgtac gatgcaacga gagatgctga ccaggtcgac gtccgtctag       960
     aactcttgga cgagacgttc aaccagttcc gttttgtgcg aatcaagatt gagctgctga      1020
     ccgaagaaga tgacttggat gtggaagtgg tggaaggtga aacagaagaa gaacgtgcgg      1080
     agagggaggc tgatgcgaat aagaagcgga aggagaagaa cgtgaaggta ctgatggaag      1140
     ctgaagattt ctactgtgct gtgaaggcga agctgaacaa gaagcgcggt ccgctggaga      1200
     ccgtcccacc ggtcctcgtg ccatctgctg ttgatgcgag gcctgctgtt ggtctgtctc      1260
     atgtcaaact tccggacatc aacctaccga tttatactgg tgagctgagt gagtggatcg      1320
     ttttccgtga cacgtatcgt agcttgattc acaacaacgc ccagctgtcg gattttgaca      1380
     agtttacgta tctacgctcg tcgctgctcg gtgaagcgct tctggagatc gctggcatcg      1440
     acgtttcagc cgttaactac gatgtggcct ggacaaccct ggagcaacgc tacgacaaca      1500
     agaagctgat cgtcaaggct catctagatg cgttgattgc ggtggaatct atgaagcagg      1560
     agagctacgc ggcgctgaat cagcttatcg gatcgttcga caagcacctg atgatgctga      1620
     agaagattgg gcaggacacg gatatctgga gtactctgct ggtacacatg gtgtgctcgc      1680
     gcttagatgg caacacgctg cgtctttggg aaactcatca taaatccaaa gaagttccaa      1740
     agttccaaga tcagatgaag tacttgcgcg gtcattgctt agtactgcaa tcggttgcgc      1800
     catccaagcc caatgctgaa gaggagaaac aacgacgtct gtcagtgagt catgcggtga      1860
     ctcactcggt gaacaagtgc ccattctgta atgaactgtt tcattcacct tttcactgtc      1920
     tgctgttcct gaagaaaacc gtcgatgaaa gaatggaagc tgctaggaga cggaatctgt      1980
     gcctgaactg cttgcgtgct ggacactcta ctcggtcctg cacgagagga tcgtgtcatc      2040
     actgtcatca gtaccataac tcactgttgc acatcaacgc tgtaccagag agaccctccg      2100
     cctcgcaagc actgaccaga ccaacacctg agcagcagca gtatcaacaa cagcagccgc      2160
     agtatcagtc aatgggccag cagcaaccac aaatccaacc ttcaatacag aaccagtctt      2220
     caaacactgc tcagtcgaac acacactcac agaacactca gcaactgtcc accacagaac      2280
     aatgcacaaa ccacaatact acaacactgt caatcagttc ccacaaccgt aaaaattaaa      2340
     ttttactttc aaccgttcaa atttgcatcc gtgatctgcg cggaaacaca cgcctagtca      2400
     gagcactgct cgactcgtgt tcgcaatatt cgtttatgtc ctccgcatgc tgcaagaagc      2460
     ttgatcttct ttgcactcca gattacctga ccgtactcgg aattggcggg tcgtctgtcg      2520
     tctcacggca gctagtatca gcgaacgtac aaccccgttc gtccgctctg ccgcagttta      2580
     accgcgagat ggatttttac gtgcttccgg agttgacatc cgctttgcca aatcagaaca      2640
     tcaacactac tgcgtgggag tttccgaaca acatcatcct agctgaccca cacttcaacg      2700
     aacctggaga agtggagctg atcattggtg ctgaacatta tttcgatctc ttacgagatg      2760
     gtcgatcacg catcgccgaa gatggccctg tactgcagaa tactgttttc ggttgggtcg      2820
     tatcaggacg tgtaccaagc agatcaacaa gcgcacacgt tgcagtcgcg cagctgaact      2880
     ccgcacctac caaccgtagc gactccgtgc cttggcggcc ggcgtgccga ccgggacacc      2940
     ctcaagaact tgatgcctgc tcaacgttcg gctgcacgtc aaagcattgc aaccggatcc      3000
     gtggaactgc tgagaacaaa ctgtcgatat taagcagtgc gcacaactgt gcgtaaccgt      3060
     cgtcagtgaa gatctgatct tgcacttgac tgtccaaact tgaaaaacaa catttcgtct      3120
     gtacgactcc cctgagtcga tccgttttac tgtctgggct ccagtgagcc aaattcgagc      3180
     cttccgtccg tcaacaatca acctttgcat gaagtccgtt atccgtaaac atctgtccgt      3240
     ctttggaatg caatccagta ccgcactgta ccgttctgtc ccgtcgcgca aaagcgctca      3300
     tttgcatgaa aacaatcaac tataaactac attttgtcgc cgtagaagcc aagaggacac      3360
     gtgtgcacct gcgtgcacag cgagacgaat tctagaccct cgtctcccca gctcagtaag      3420
     cgtgatcatc tgcgagtctg atcaactcgt ttcggaggtc gaagcagccc tgagaaccag      3480
     cagcacaatg tggtcctgca cgtgcacaaa tgtyggtcgt cccagcgcaa gagcgctcga      3540
     ggttagttag cctccccaag gacatccgtc aaagctccag acagtcaaca caacatcgtt      3600
     gtcgagaagc agtcagttcc tgaaaacatc attagcggct tgtggccgca accgtttcat      3660
     ctggctacaa ctgtggccaa gccaagctgt cgccgtctgt tgcagtacaa gttgcacctg      3720
     tctgtttctg ctgcgccggt acaagctgtt catccgagtg gccatcgttc gaggatccag      3780
     cactaaagca ctcggggtgg cgctgtcgca atcggacggg ttggactgcc gcccctaaga      3840
     agcccaacgt taagtatcct gtaaatgtat gttgtcgttt tagactctga gtcactcttt      3900
     ttggcaggta cttaccgtct gcggtcatcg ctggatcccc agagtcagaa ctgcactcca      3960
     agcaacatgc aaaacagaag cagtgataag tggagagata acagatatca gagaagagaa      4020
     gaagagagca gggtcgtagt ctgtttaaaa ccttaggttt tcaaggcggc cggca           4075
//
ID   BEL-54_CQ-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_CQ_;
KW   BEL-54_CQ-I; BEL-54_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-351
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 262-262 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 351 BP; 101 A; 102 C; 55 G; 93 T; 0 other;
     tgttggcgca caaagattgg aaacccctga aatgtgatcc acaagtcgga gatctactga        60
     tctccctttg attcccacga atgatcgtcc tattcctgtt cctcaaaatt ctctcttctc       120
     ccatagccca aatcccttat cattccctct ccaaattccc tgcacaaaac cgatcacaat       180
     aaactgctcc agtatcagtc gcaattagac accgtcgaga acacaaccgt cgcgtaataa       240
     aactaacttt tacaccgtcc gaactgttag cgtttaagtt taataaaccg tttctgtgcc       300
     gtaatcgcgc gttttaagtg cagtgtccga aaccaaaacc gtgcacgaac a                351
//
ID   BEL-54_DTa-I repbase;    DNA;    INV; 5353 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5353
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5653-5653 (2021).
XX
DR   [1] (Consensus)
XX
CC   >98% identity to consensus.
XX
SQ   Sequence 5353 BP; 1522 A; 1304 C; 1247 G; 1280 T; 0 other;
     tatctttgga ccttctagcc aaatttagct attgattaac atggatcagt ttaagcttct        60
     aaaggcagca agaagtcgtg cgaaggcaag cattacgcgt ttgctaacgg cgtcacaaga       120
     tccacgtgcg ggatcaaact gggaattgga tgaaatcaca gtctcattgg aaaggctcaa       180
     caacgtttgg aaggagtttg agaccattag cgatcaaatg gccctttatg atggagaaga       240
     ggggtacatc gatccagcca tcgacaacga gaggtacgag gataagtaca tgcaagcaaa       300
     caccttgttt cacaccatta aacggcgctg tcagtcatcc aatgagagcg acagagaagg       360
     cagcaacggt aggcaatctg gcaaccttga cgatgccgca tcaagttcat caggattggg       420
     aacgaaagcc ttgctcgttt tctacaacaa cagcaggagc tgaatgagcg tttagctgag       480
     cagcaatcaa catttttgag agcaaactcc gcagcaaatg taatgcacaa cgagctgcca       540
     aaaatccaca tcaaggtgtt ttctggtgac tacaaagagt ggccagcctt taaaaacatc       600
     ttcgagagta cgatccacag caagcagcat ttgacagcaa tacaaaagtt ccactactta       660
     aaaacgtaca ttactgggga agcagcggac ttgattcgtc atatgccaat aacggatgct       720
     gcttatgagg ctgcttggag ttgcctaact gagcgataca acagaccacg tcacattgtc       780
     aacactctac tggaaacgtt tgtaaatctc ccttcgacat ccagggcaga tgttgcagtt       840
     ctgcgcaagg tgaccgacgg agccacggag attgtacgag gattggatgc agcagggcaa       900
     actaacaggg actgctggat catacacttc attctggcca aaatcgacgc tgaaactcga       960
     cgcaaatgga ttgagggaag ccgggaactt gaatctccgt ctgtggatga tttactcaag      1020
     ttcttagacc gacgctgcga ggaattcgag ctcacaaaag tgagtcagac atagacttca      1080
     aggttggcgc accacaactg agcaaagcaa agcgttcgtc ccatgcctta gtatcgatgg      1140
     aagataatgc ttgtgtgaaa tgtaactcta aggagcacaa gatctacggt tgcccaaagt      1200
     ttgctgaagc atcgatcgac cagagacgca catttgtaaa gacaaaatcc ttgtgtttca      1260
     actgtcttaa gcttgggcat gtatcacgca agtgtgaatc caaattcaca tgcaagattt      1320
     gccataatcg ccatcactcg ctgctacatg cagatattcc tggatcgcaa gccgctgtga      1380
     ccacgacaca gccacatact gatgaaaggc acgtctcaag cgctcccgaa gatgctacgg      1440
     tgaccatcag ccatattgct cgcgcgcaag cggctcccac agctgagtcc ttgtgcaacg      1500
     gatcaacaac ggctacacag ccccaagggc taaggaaaag tgcattgcca acagctctgg      1560
     tatttgtaaa aaccgcaaaa ggatcgcaca ttacatgtcg ggtacttttg gacagtggtt      1620
     cggaactgtc gtacatctca gagaggtgcg tacaggcact tggtctgtca cgctcgccct      1680
     cacgcattgt agtgtctgga atttcatcga tcaaggcgga gacaactaga ggctgcagca      1740
     cactggacat gcagtcaagg atctcagatc acacaatgaa ggtacgcgca cacgtactca      1800
     gcaaaattac ctccacgtta gcaagacacg atatcgaggc ctcagcactc aaggcatttg      1860
     ctggctttga gcttgcggat tctgattatc aatcgttggc gccagtcgat attcttttgg      1920
     gcagcgatta cgtttggacc gtgttcaccg gtcaaaagat gttcgacatc cagggcaaca      1980
     tcatcgccat ttcgaccatt tttggatggg tcataacatc tatcgttact accggctgtt      2040
     catctacaac aacaatgcac tcggctattg acattgactc aacgcttcgg cgcttttggg      2100
     agctggagga tgtcaaccag gaattccatg ggaaaccaga ggacgatgaa gttgaacagc      2160
     actttatgaa aacgcacact cgggactcca aggggcgtta catagtcgaa cttccgttca      2220
     aaaactccaa cgaacagttt tcggatactt tacaaggagc actggcaaga ttcaggggtg      2280
     tagaacgccg cctaaagaag gaccccgatc tgcactcaca gtatgtacaa tttatgcgtg      2340
     aataccttca gttaggacac atgcgggaat tatcgccagg agacattgac aaagggaaaa      2400
     gcttttactt gcctcatcat ccagtaatta cccaaaagct aagggtagta tttgacggct      2460
     cattcaagga tacgaatgga aaatccttaa acgatgctct acacattgga cccagcattc      2520
     tccgaaacct cttctcgatt tgtatgcgtt tcagaatgtt caagttcgtc ttttctgcag      2580
     atattgtcaa aatgtatcga caaatcttgg tggctgccaa ccattgtagc tatcagcgta      2640
     ttgtttgaag agaagatgac acctatcaag cactatgagc tttccacggt tacatatggc      2700
     acatctagtg caccattctt gtcagtaaga gtcctggatc agttagctaa cgaccaccaa      2760
     cacgagtttc ccaccgctgc aaggatctta aaggagcagt tttatgtgga cgacgtactg      2820
     acgggagcac ctacagagga ggagctaatt cacaatcaaa aagagctgat ccaattaatg      2880
     aaatgtgcag gcatggaact tggcaaatgg gtttcaaatt catcatgtat agctgatcga      2940
     gctacttcta caaccgaggt acaaggcaaa ggatccactt ctacagcaaa ggatcttgtc      3000
     attcattggg atccagaaga ggatacgtta tcctacaaag tttgccttgc accgaatccg      3060
     gacaacacca agcgccaagt gctgtctggc gtggcacgga tctttgaccc gctgggtatt      3120
     ttgtcgccag tggtgatgca gtttaaaatt ctgttccaag aattgtggtt actggagctt      3180
     cctccaaaaa ttgctgactg gtggaacaaa tgccgtaacg acctacacat acttcaagaa      3240
     ctacgcctgc cacgatttgt cgaaaacaat ggcgatcaca tcgaactgca tgggttctca      3300
     gatgcctcca tcaaggcata ttccgcagtc atctacagca gagtggtgcg agcagatggc      3360
     accgtgtcgg tttcactcat agcaggaaaa accagagttg ctccactaaa gcagcaatcc      3420
     ctaccgcgcc tcgagctgtg tggcgctttg ctactgagca gactaatcct atctgtcaag      3480
     gattctctgc aacacaagga catcgaaata catgcatggt gtgattcaac catagttttg      3540
     gcttggcttt cacatccacc atcgaagctc aaaacatttg tagcaaacag gacttcagaa      3600
     atactcgacg cgttgccgcg tagtgcatgg catcatgtaa acacgaagga gaatccggca      3660
     gactgcgcca cacgagggat tgctggctgc agaccttctc catttcggct tatggtggat      3720
     gggaccttca tggctgcaag atccagaaaa gcttgcggta aagttgagct gcacaaaaat      3780
     ctgttcttcc ctttcagata accatggcaa aaaagaagtc aagtacaccg cattaaccac      3840
     tcagcaaggt gactcatttt caccgatcga agcgttgact cagcgggtct cgtcctgcac      3900
     aaaattggtc cacgttgtag cttacgcatt acgcttcata caaaggacca ggaccattaa      3960
     acttgaagcg ctgacaaatg gggccaggct caccttggaa gagattcagg ctgctcgcat      4020
     actttgcctg cgtgaggctc agaaatgctt catggatgat cgaaatcttc tgacggaaaa      4080
     caaaccactt cgcagccgct cccagttgat caagctttca ccgtttgtct gcaaggatgg      4140
     cctccttcga gttgaaggac gcttggccaa ctcgcagtta ccagctgacg tcaaacaccc      4200
     catattgctt ccgaaatctc accgcattac aaggatgatt ttggaacacg aacataccgc      4260
     aaatctacat ccaggggtgt ctgctctgtt tgtatttacg cgtcaaaagt attggatttt      4320
     cggtgcgcgt aacctaataa gaaacctggt acacaactgc gtaaagtgcg accaattcat      4380
     ggccgatcta ccagggattc gtataacgga ggctcttcct ttccagcact caggctgcga      4440
     ctacgctgga ccattcatcc tcaaggaaag gagagggcgc aatcccagaa aaactaaagg      4500
     ctacatatgt ctcttcgtct gccttgtaac atcagccatt catttggaac tggccaccga      4560
     ccttagcaca gacacattcc tggcatgtct tcggcgtttc atgtcccttc gaggaaaatg      4620
     ttcgcaaatc ttcagcgaca acggcacgaa ttttgttggt gccaaacggg ctctagatga      4680
     gatgcagcaa catctctctt cgcaggagca tcaacacacc gtaactcaat cgttggccaa      4740
     tgatggaatt aagtggagtt tcatacctcc ccattcgcca cattggggag ggaagtggga      4800
     gtcatcagta cgatcagtta aattacatct gagacgcgtc gtgggaaaaa ctgttctaac      4860
     cttcgaacag atgcaaactc tgattgttca gatcagtgcg gtggtgaact caagaccgtt      4920
     atgctacaca cctgacactg acatcaccta cttgtctccg gcccattttt taattggccg      4980
     cccattcaca acggttccag agggtgatct gactcatttg ccgatcaatc gcttagacta      5040
     ctggcagcat ttacaatcaa tgtaccaggg tttttggaag cgctggcacc aggaatatct      5100
     aacatcgctg cagcaacgtc aaaagtggaa caacaaggaa cgtaacatcg ctgtaggtag      5160
     tgtagtcctt gtaaaggact caaatctccc tccagcatct tggatactag cccgcgtatt      5220
     ggaggctcat cagggaccag atggactggt acgcgctgta aaacttaaga cgtctactgg      5280
     agagatgacg cgacctatca ctaagttagc tgtgctgcct aattcagaaa ccatgtttca      5340
     gggcggcccg gga                                                         5353
//
ID   BEL-54_DTa-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-54_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5674-5674 (2021).
XX
DR   [1] (Consensus)
XX
CC   >98% identity to consensus.
XX
SQ   Sequence 241 BP; 72 A; 39 C; 43 G; 87 T; 0 other;
     tgttgatgaa cggattgcat ccataatttg aatttgaatt tttgttgact ggtcatgtga        60
     aataccagct tcgcccattt ttagtatttt taagtatctt ctgtgctgcg tgacacgatg       120
     agattttttg gttttctaag ttaagtaatg agactacagc ggaacatgtc gattcaataa       180
     agtttaactc aaaatataca gtccattcaa atcggaaata aaccgtgttt attcatcacc       240
     a                                                                       241
//
ID   BEL-55B_DTa-I repbase;    DNA;    INV; 1479 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55B_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1479
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5642-5642 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 1479 BP; 502 A; 339 C; 328 G; 307 T; 3 other;
     tttggtgacc ccgacgtgat ctcaccaaga gatcacaccc tagaacacaa cgttggagat        60
     atcttccata cgagtccttt tgcccaagtc gtcaacaagg cgacagatta aggacacctg       120
     aggaagtcga ctcaggaagt tggaagactg gtcaacaagg cgaccagctc cgtcaacgat       180
     ttggtaaatc gtttgtgatc ccagcaggaa aggattcgtg aatccaatcc cggacacatt       240
     ctcaaagttg tcaacaggcg acactttgaa aaccaacacc atcctcacag caagtgccac       300
     cgtggccaca gagggacacc tgagatcgaa cccatcgatw caggatcaat aaaggaccgg       360
     tcaacaaggc gaccaccttt atccaccatt actgttcagt ctcttgacca aatctggttg       420
     cgaatcggag cgtatccgct aagcgaataa aatactccca ccgggtcaga gacatagaac       480
     aagatcaaaa tggttaacag catgggtgaa gagaatcctt catcggaaat tcaaaagatt       540
     ttaaatgcac aacaagaaat aggcaatgac attgctaggt gcatcaataa tttcaagaaa       600
     gatggacctg cacgaaaaca aaagcctgaa tattttgaag cccgattatt ggcaattaat       660
     gaagcctggg agatgtttaa agaaaatgag actcatctgc cagactcaca gaaaggatct       720
     aagtacgaga agtacgcaaa cgatcttcga tcgacttacg agaaatatac caagatcttt       780
     caggaaggtc ttgacgtact cctagccagt aacagcaagg aggttgaaag ttcgatcaaa       840
     acttggcagc cacctatgac agaagtcagc gacaaaaggc tagcctcact atgccgacgc       900
     caaggagagg ttattaaatc cctaagaatg gcgctaaagg agtacgcgac tataaagggt       960
     cataagttct ttgtgggcac aagtacaaga ggtccattta aaaatttatg aagaatttga      1020
     caacccgata ggattcctac aacaaggaag cctacgggat gttacaaatg gaaatgcaaa      1080
     aggcgctcat ggcttggcca agtgcatccg acacaaacag cactgatgtg cagctgccaa      1140
     gaataagcat cccgaaattc gatggagaac tgttaaaatg gagacaattc tttgawttat      1200
     tctcatgcat ggttcatgaa accaacatgc ccaccataaa gaaaatgtgg tacctaaaaa      1260
     ccgcacttac cggtgatgca gaaakgttga ttcggcatat agaactcaag gaagacatta      1320
     tgacaagcgg gaaatacttg ttgattcgtc aactggaagc cacgacagcc aacctgcacc      1380
     aaccaagaga acgacgagca gccatcacct gaacctaccc cacgaagttt tgcgttcagc      1440
     attagcgatg gttgaacacc tgttcaacgg ccgggagaa                             1479
//
ID   BEL-55C_DTa-I repbase;    DNA;    INV; 8019 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   19-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55C_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8019
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~97% identity to each other.
XX
SQ   Sequence 8019 BP; 2583 A; 1829 C; 1718 G; 1889 T; 0 other;
     cggaaataga gcaataacgt agcactgcat atagcacttt gacccactgc gagttatgca        60
     gaatagctgt aatttcattt tccctttcta catattttgt taacgtaaac acttttgtac       120
     ctataaatac cgttaagttt gttcaataaa atcagtctca atctcagaat accactgact       180
     gttactcatc taccatcgca atcaacagag gctgtcgctg tgtcttcaga tcctcatctt       240
     gcgcaccatt ctccgccgtc cacctagttc caagtgctgg gtgcgacacc taatcagtag       300
     acagtttatg tgctgtatgc tacccaaccc cccgatacac aaatcctgtg accaggcgaa       360
     gtaacgccac tcacgctaag gataacgtat taacatttgg tgaccccgac gtgatctcac       420
     caagagatca caccctagaa cacaacgttg gagatatctt ccatacgagt ccttttgccc       480
     aagtcgtcaa caaggcgaca gattaaggac gcctgagaaa agtcgactca ggaagttgga       540
     agactggtca acaaggcgat cagctccgtc aacgatttgg taaatcgttt gtgatcccag       600
     caggaaagga ttcgtgaatc caatcccgga cacattctca aagttgtcaa caggcgacac       660
     tttgataacc aacaccatcc tcacagcaag tgccatcgtg gccacagagg gacacctaag       720
     atcgaaccta tcgattcagg atcaataaag gaccggtcaa caaggcgacc acctttatcc       780
     accattactg ttcagtttct gaccaaatct ggttgcgaat cggagcgtat ccagcgtaag       840
     cgaataaaat actcccaccg ggtcagaaac atagaacaag atcaaaatgg ttaacagcat       900
     gggtgaagag aatccttcat cggaaattca aaagatttta aatgcacaac aagaaatagg       960
     caatgacatt gctaggtgca tcaataattt caagaaagat ggacctgcac ggaaacaaaa      1020
     gcctgaatat tttgaagccc gattattggc aattaatgaa gcctgggaga tgtttaaaga      1080
     aaatgagact catctgccag actcacagaa aggatctaag tacgagaagt acgcaaacga      1140
     tcttcgatcg acttacgaga aatataccaa gatctttcag gaaggtcttg acgtactcct      1200
     agccagtaac agcaaggagg gtgaaagttc gatcaaaact tggcagccac ctatgacaga      1260
     agtcagcgac aaaaggctag cctcactatg ccgacgccaa ggagaggtta ttgaatccct      1320
     aagaatggcg ctaaaggagt acgcgactat aaagggtcaa gcctccacta acttcataag      1380
     ttctttgtgg gcacaagtac aagaggtcca tttaaaaatt tatgaagaat ttgacaaccc      1440
     gatagaaaag ggctacaaca aggaagccta cgggatgtta caagtggaag tgcaaaaggc      1500
     gctcatggcg tggccaagtg catccgccac aaacagcact gatgtgcagc tgccaagaat      1560
     aagcatcccg aaattcgatg gagaactgtt aaaatggaga caattcttcg atttattctc      1620
     atgcatggtt catgaaacca acatgcccac cataaagaaa atgtggtacc taaaaaccgc      1680
     acttaccggt gatgcagaaa ggttgattcg gcatatagaa ctcaaggaag acaattatga      1740
     acaagcatgg gaaatacttg ttgattcgta tgacaagcca agacagcttg caaaaacagt      1800
     aattcgcaaa ttgttgcatc aacaggcatc ttgtgatagc gcaaagtcat tgcaggaatt      1860
     atatataaca acgattgagt ctctcgcctc cctaaagggc ctaggcatcg acatatccac      1920
     atgggatcca attttagtcg tgctcctgac agacaagctc gacatgaata accgagcgtt      1980
     gtatgagcaa tcacttggaa gctcgactga gatccaacca ttacatacaa tgatagattt      2040
     tttggatcaa agagtacgag tcctaaacac aggaaaatcg aaaaatcgtc gaaaagagag      2100
     ccaaagaact caacgtgtgc gtcgtcaaca actggaaagt tctctgcatg tgaattctgt      2160
     aaaaaggaag cccatcccct atatagatgt gaagacttcc gatctaggcc cacatctgaa      2220
     agattgaatt gggtactgaa acaaaaaatg tgcgtcaaat gcttcggcac tgatcacaaa      2280
     acaaaggact gccgcagtcg aaagtgtttt aagtgcaaga aggatcacaa tactctgctt      2340
     catctcgaca ctacagtaga gcctcgtaca ccaattgtag gggcggcgag taataaaaat      2400
     tataatctac tcgccacggc taaggttgca gtacaggcca acaatgggca gtgtgcaaac      2460
     tttagagcac tactggactc tggatcacag ataaatctga ttacagagcg aatggcttca      2520
     atgttatcac taaagctcca caatgctaag ttacgaattg aaggcattgg aggactcccg      2580
     aaaactagta aagcacgagt caacatacta gttaaatcac ttcatagtgg tttcacacaa      2640
     cggattgaag cttttgtatt gccccaataa taatacctga tcagccagcc cagccacttt      2700
     cgctagcggc tacaaagtta tccaagggaa tggccttggc ggaccccaat tttgacaaac      2760
     caggaaaaat agacctgctc attggtgcag agcactatta ttctttgctg ctcccaaatc      2820
     agaagaactt tacaaccaaa ggtccaattc tgcagaacac aaagtttggc tggatcgtag      2880
     ctggtaaggt gaatgctact gacagttcgt ccgccgtctg cgcgattaat tccatacaag      2940
     aaaccaacga tttaatagaa aaattttgga cattggaaaa cttggacaca accgaaaaac      3000
     atcggtctcc cacagaagca tactgcgaaa agcatttcat gggaaattta aggacagcag      3060
     cagatggaaa attcattgta aaactcccgt tctctgaaca atcttcagcc ctgggggagt      3120
     caagagaaat agctacgaaa aggttcctcg cattggattc cgacttcatg gatgagtatg      3180
     aaaaattggg acacatgaaa agtgtaggtc cagcacaaat tcccaaaagt cattacttca      3240
     tacctcatca ctgtgtcctc aaaccggaca gcactaccac aaaattacgg gtagtatttg      3300
     acgcatcatg caaaacatcg agcggaaaat ctctcaatga tatcttgcat gccggcccaa      3360
     ccgtacaaag tgagttattc gcgatacttc tacgcttcag aactcacaag tatgtgttca      3420
     cagcggacat agagaaaatg taccgtcaag tctggataag cccggatgat cagttttatc      3480
     agctcatcgt ctggagaagc aatccatcag aagatctcaa gtactatcgc ttgaagactg      3540
     taacatacgg aaccacatcc gctccgtttc tggcaacaaa atgcttaaac catttagcac      3600
     tcatatcaag ggccacttac cccttgggat caggcaaact cgagatgact acggggacga      3660
     ctgcctcact ggctccaatt caattgccga aagcaaacaa attcgcgatg agctaaataa      3720
     aatcctagtt ccgaatggat ttaaactccg aaaatggtgc tcaaacaacg aacaattgtt      3780
     acaaggaatt cccaaggaag acattgttag tgatgtcaaa ctagatgaat cgtttgaaca      3840
     ttacagcgta aaaacgctgg gtctcatttg gatgcctaag aaagatcatc tatgcggaag      3900
     gactcaaaag agccactcga ccaagattac gaaaagagtt gtctgctcgg agttggcaca      3960
     aatttttgac cccttagggt tatttgcacc agttgtagta aaagcaaaaa tctttttgca      4020
     gcaactttgg gaaaccaaac ttgagtggga tgatgagtta ccggaggatc ttcaaacaga      4080
     atggaaaaat taccgggatg atcttttaac cctggatacg ataacgattc ctcgtcacat      4140
     atatgatgga aaaattccag tcacccaaga gctacacacc tttgttgatg catcggaacg      4200
     tgcgtacgga gcagcaatct acgttcgggc aacatacaaa aataaccagg tctcagttag      4260
     gttactctgt tcgaaatcac gagtagctcc aaaggctcag cagacactac cccgattgga      4320
     actatgtgct gcagtgttag gagccgaact aagcgacaag gtcagaaagg acctatcgtt      4380
     cgatagcagc gtgacaggat actactggag tgattccatg gtggtattat catggattaa      4440
     tgctgcagca tctacctatc acacatttgt ggccaataga atagccaaaa ttcaggcaat      4500
     aacaagccaa gcgcaatggc gtcacgtttc atctgcaaac aatgcagctg acgttctgtc      4560
     aagaggcatc ctcgccagca agttaggcga ccataatctg tggttctatg ggccactatt      4620
     tctacatgga tcgtcaagcc agtggaccag cacgccggac ctcaagccga gcgatctgga      4680
     aaggaggaca aaatatataa gtttgccgat ctccccaacc acaatcggga agagatctgc      4740
     agctgtaagc acaataattc gttctacaaa ttgcagcgaa tagtggcgta catgttacgg      4800
     ttctgctaca aatcgaacag atcgccaaca tcaacgatac tcaccgcgga attgcatcaa      4860
     gcccgaattg tgattctacg taccatccaa caagtggagt tcgctgcaga gttaagccag      4920
     ctgcagcgct ataggacggt ggacaagaaa aatcgactag tttcactatc tcccatactt      4980
     ggcaatgatg gccttataag agttggagga aggctagaaa actctgcact tccctacgaa      5040
     tctaagcatc agattctatt gccgtacaat gatcctattg taaaaatgtt gctacgagag      5100
     acgcatgagg acgacatgca ttgcggggct caagcactac gagcaatcgt gcgacaacag      5160
     tactggattc tcaacgaaaa gatcatgtcc agaagcatta ttcacaactg tgtgagatgc      5220
     actagagcaa ggcccaagct gatgcaacag atcatgggag acctcccagc tgaacgagtc      5280
     acacaagcac gcccattttt aaagtccggc gtagactatt gtggtccctt ttggattcat      5340
     cacaaaatcc gaggaaaaag acccgacaaa gcatacatcg ccgttttttg ctgtttctcc      5400
     acaaaggcag tgcatcttga attagtaagc gatttaacca caaacgcatt cttagcggcc      5460
     ttaaggagat ttctgagccg ccgcggcaga tgtcagacaa tccattgcga taacgcaacc      5520
     aattttgttg gtgctaacaa ccagcttaag gaattggaaa cgacaatctt cacggaaagg      5580
     gctatggatc agattataag tcaatgtagc agaagacaag ttgactttaa attcataccg      5640
     ccacgagcac catcattcgg aggcctctgg ggggagcagc cgtaaaatcc gccaaaaaac      5700
     tgttattgac aaccagctct acggcatcat tgacgtttga agagttaaac acagtaatag      5760
     tcgaagtaaa aaaaaaataa aaaaaatacc ccaaaatttt tccccttttt caataaaatt      5820
     tttttttttt ttaaaacttt ttttttttcc ctcccatttt attgggggtc ccccccaatt      5880
     ttcttttaaa acgctgggga ttggtttcca ggctgaagca tttattctgg aaccaatggt      5940
     cagccgagta cttacaagag cttcaggctc ggcacaagtg gaagacagaa gcacaaaacg      6000
     tcagggaagg actaatggtg gtggtaaaag aagataattt accagtaatg aattggccac      6060
     tgggacgagt aattaaaact tatcatggtg cggataatcg cgttcgggtt gttgatgtaa      6120
     aaacagcatc tgggatattt aagaggccca tcactcggtt ggcgccatta ttcccagaag      6180
     agagcggtgg caagcgccaa aggtccgaag ctgaatcccg tctggaacct gatgagccac      6240
     ctgtacgtcg gaaaaagtag tgttgggcag cacagtctca gtcctactgg cgctgctgtt      6300
     gatcctgccg gtagcactgg cgcagactgt caatattacg tgtttcacaa accaccccgg      6360
     aatattctat gaacgactcg gaacgtaaag aacggcaatt tcggaatgga ccatcattgc      6420
     gtattatgac ttgaaaccat attggagcga tatgaatata ttgtccactg ggcttaagga      6480
     gctcaggcac aagtgttctg agctggataa cgaaaacgca tgcaactcta tatttgagca      6540
     ttttcaacat gtagatggcg agctacccat tcccgacagc gaagatcacc acttaatata      6600
     gtaggtaacg tggctaactc actatttggc gtactggacg ccaggtacgc agacgacatg      6660
     gccaaggtca taaatgaagt gaaatctaga gaagacgtgt tgatgatgct actcaaaaac      6720
     caaacgtcga tcttggattc tacaataaac gtagtcagga aaagcaagtc atccactgat      6780
     aaccgcatca gaaatttgga gcatcaacta gcaaccctca acaaggaacg aggcagatat      6840
     caaggcgacc acttacagca agcatttgta atcttaactg cccagctaac tctgctggca      6900
     actggaatgc agcggatgca agcggaaatc gctagcgttc ttaccgacgt tcttcatcga      6960
     accatcagtc ccatgctggt aactcctagg cagctaagag actaattcga caaaattcgg      7020
     gatcatctac ttccggatca aatgttgccg gtctcatcga aaaatgtaat ggaactctat      7080
     aaaatcatgc gcgctgaggg aaccacaact acagatcatg ttacattcaa agtaacagtg      7140
     cctctggtgg cgacagcaca gcaggaagtc ttcagtatca ttcccatccc gaagtgcaaa      7200
     tcaggaggct agaatcgatt cgacattaag tcacctatca tagctgtaaa ttaccacaga      7260
     gatcaattca tgggtcttac tgaggatgag ttcaagcaat gtctagtatt atccaacaac      7320
     caggaacaca tttgctttaa ccatcaagcc gcattcaacg atgaaaatcg gtgtgagttt      7380
     cagctattca acaacaaatc tgaaacactc tgtgagatta ttaagtcgaa agcagagttg      7440
     atttggttaa gaacgcatca acaaaacaga tggatgtttg cgacccacta ccaaatagaa      7500
     cttcaagctg tatgcaaggg aaatccattc actattgacc tggatggagc gggcttattg      7560
     tctctgtccc cgggctgcac cgcacgaaac gccaacatta gtattagcac attcagcacg      7620
     atgatcaccg aatcacattt agcgtatatt cgttttggca acataacaac acccgttgtg      7680
     gaagatacat cagagtcagc tcgagagact gcaactcaac catctgaatc agacgaactg      7740
     gatcgtctac aacaaaggct ggctaatcta aaggacacag catggtcaaa tcaatttacc      7800
     accgtgcaat atcatcaagt agccgcgtat gctgcgttag caatatcaat aatattaatc      7860
     attgtatata gtctccgaaa gcgattcgtc aactggaatc catgacaacg taccggcaac      7920
     aaggaagaga acgacgagca gccatcacct gaacctaccc cccgcagttt tgcgttcaaa      7980
     attagcgatg gttgaacaac tgttcaacgg ccgggagaa                             8019
//
ID   BEL-55_AA-I repbase;    DNA;    INV; 6203 BP.
XX
AC   supercont1.317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_AA_;
KW   BEL-55_AA-LTR; BEL-55_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.317; Positions  128184  121982.
XX
CC   'AACTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..5957
FT                 /product="BEL-55_AA-I_1p"
FT                 /translation="MSGLERKLRYLKTRRRSILTSLASIEKFVASYQEEAD
FT                 EPEVPIRLEAIVTLWTEFNKVQADLETQDEAPDALEIYLKERVEFENSYYK
FT                 VKGFLSQRCPAPSSTPTSNPPAQSHSNHVKLPDVKLPIFTGNYETWLNFHD
FT                 LFVSLVHSSSELSSIQKFYYLRSSMAGEALKLIQTIPISATNYSVAWNLLV
FT                 EHFQNPKVLKRNYVQALFDFPVIRKESPDELHSLVEKFEANVKVLKQLGES
FT                 TEYWDILLIHFLSSRLDPITRRDWEEFSATRDNVVFKDLTDFIQRRVSVLQ
FT                 QMSSKQPESQQAYQPRKPSNPRIGSHGAFQENRRKCLFCPEEHPIYMCSIF
FT                 SRMPVEEKEKLIKRHQLCRNCFRKGHMARDCPSENCCRRCNSRHHTQLCTT
FT                 NTSTQGRSTNAAVTTSDVRNATPSTSGATPSDPPSSSASRASTSTMNAAHS
FT                 GVTSCNSQQPGRSKVLLATAVVIVVDDAGREHFARALLDSGSECCFATSQL
FT                 SQMMNVRRTRVDVPVAGIGKSALKVKHQFRAVIKSRNSDYTTSVDMLILPK
FT                 VTMDLPSTDIDVSRWDIPSNITLADPAFFQSSTVDIVLGAEIFFDLFAVSG
FT                 RIFLGESLPSLTNSVFGWVVSGRTAQYSSQTSVRCNVATVADLHDFMEKFW
FT                 KVEEDPTATSYSPDETACEDFFQRTVSRDSSGRYMVRLPFKEAMIQRLGDN
FT                 HKSALHRFRLLENRLSRDASIAQQYRDFMTEYLRLGHMAPLSSVGEEIEPK
FT                 YYLPHHPVIRDSSTTTKLRVVFDASSKTSSGISLNDALLVGPIVQDDLRSI
FT                 VMRSRTHEIVLIADAEKMYRQVRHSSEDYAYLCIFWRISPEQPIQTFVLQT
FT                 VTYGTASAPYLASRVLKQLASDEAANYPIAAKVVENDFYVDDLFTGAATAA
FT                 ETIELREQIDGMLSKGGFSMRKWASNCEAVLEGIPSENRALQHSIDFDRDQ
FT                 TIKTLGLHWEPGTDLLKYKIDLHLPLNTVLTKRLTLSYIAQLFDPLGLVGP
FT                 VVVTAKAYMQTLWTLRDENGKIWEWDRELPVSLRDRWIAYHSDLPTLNNLR
FT                 INRFVLLSKPLEIELHMFSDASDIGYGTCAYLRSTDSLGRIKVALLTSKSR
FT                 IAPLKRQSTPRLELCGALLSAELYQRISTSLQFPFIAVFWTDSMTVINWLN
FT                 ASPSTWTTFVANRVSKIQHATQKCTWNHIAGLQNPADVISRGCLASELISN
FT                 KLWWGGPDWLEKEKDYWPVPGQQCRATDHSDSERRRSAAVFASTTTEPSFI
FT                 DEYSGKFSSYTKMVRTTAYWRRFFAILRSPKEDRTFTFLTTNELKTAEHAL
FT                 IRLLQQQCFPDEWKRLQSGQHVAKSSRLKWFHPTISSNENIIRIGGRLGQS
FT                 KQHDDFKHPILLPGTHQLSTLLLSSYHQKLLHAAPQLMVNTVRLKYWLLGG
FT                 RSAARQVVHKCVTCVRARPKLIEQFMSELPAARVTAARPFSRVGIDFWGPI
FT                 QLQPRHRRDAPIKAYVAVFVCFATKAVHLELVANLTTAKFLQAFRRFVARR
FT                 GLCADVYTDNGKNFVGAANELKKLLRSREHKDQVAQECAENGIRWHFNPPK
FT                 GSHFGGLWEAAIRSAQKHFVRVLGSRLIAHDDMETLLAQIECCLNSRPLTP
FT                 LSEDPSDLNPLTPGHFLVGSALKAVPDANVLSIPYNRLTQWQQTQKAFQDI
FT                 WSRWHLEYLATLQPRAKWCNPPVEIQRNRLVIIKDENLPPLQWPTGRIHEL
FT                 HPGKDGVVRVVTLQTARGFVTRPVAKLCLLPISMPAGVGSISNDGEASSNA
FT                 EQTQQ"
XX
SQ   Sequence 6203 BP; 1621 A; 1643 C; 1413 G; 1526 T; 0 other;
     tctggtcctt cgaaccggat ggtcgtcgac gcgattccga ccacccggtg aagccacggc        60
     aaatggttcc gacgccattc ctgcgaatcc aagctattca atcaggatat tgccattaaa       120
     tattttcccg cccgtcgcca tctttcaacg ccaagtgaag ctgcttgaga ataattgttc       180
     aaggcattga caattattct aaaaggtgag tgatattcca atcgctctac aagtttatcg       240
     ctcgtctacc gggtcttctc tgcttacatg ttaccattgt ccaacgggac aattatcatc       300
     gttttctgtg cactgtgatc tccacctgag acattccggt cgactttccc ggaattttgc       360
     gatatttcat ccgatcctgc gcacaattga ggcaagccag cgccattgct gaacggacac       420
     caacctgtac ttcgtgtaag cagcccaatt agcagccatt gctgacacag ccacatccac       480
     agccaaagga cgtatcgcag ttcgagaaag ggaaatttta taaatacaag gcactttatt       540
     gcctttgaga aggtaattat cgctccattt cgttagtttc gccttttccg ggctacctgg       600
     tctcaatttg tagatcctga ttcaccgcca tgtccggact cgaacgtaag ctgcgctact       660
     tgaagacgcg acgccgcagc atcctgacgt cattggcctc catcgagaag ttcgttgcat       720
     cataccaaga ggaggcagac gagcccgaag tgccgatacg actagaagca atcgttacgc       780
     tgtggacgga gtttaacaag gtacaagccg atttagaaac ccaagatgaa gcccctgatg       840
     cccttgaaat atacctcaaa gagagggttg agtttgaaaa ttcctactac aaggtcaagg       900
     gttttctttc tcaacgttgc cctgcccctt caagcacgcc cacttctaac ccccctgctc       960
     aaagccattc gaatcacgta aagctgcccg atgttaagct accaattttc actggcaact      1020
     atgaaacgtg gcttaacttt cacgacctgt tcgtgtcgct cgtacactca tcatcagagt      1080
     tgtcgagcat tcaaaaattt tattatcttc ggtcgtcaat ggctggagaa gcactgaagc      1140
     taatccaaac gataccgatt agcgcgacta attactctgt cgcatggaat ctcctagtcg      1200
     agcatttcca gaaccccaag gttctaaagc gcaattatgt tcaggcattg ttcgattttc      1260
     ctgtgattcg caaggagtcg ccagatgagc ttcactcgtt agtcgagaag ttcgaagcga      1320
     atgtgaaggt gcttaaacaa ttaggagaaa gcactgaata ttgggacata cttttgatcc      1380
     acttcctctc aagccgtctc gaccccatca ctcggcgtga ctgggaggaa ttttccgcca      1440
     ctcgtgacaa cgtggtgttc aaggacctta cggatttcat tcagcgtcga gtcagtgtcc      1500
     tgcagcaaat gtcttccaaa caacccgaat cccaacaagc ttatcagcct cgtaaaccat      1560
     caaaccctcg catcggtagc catggagcct tccaggagaa tcgacgaaag tgcctcttct      1620
     gcccggaaga acatccaatc tacatgtgca gcatattcag tcgcatgcca gttgaagaga      1680
     aggaaaaact catcaagcga catcaactgt gtcgcaactg ttttcgtaag ggtcacatgg      1740
     ctcgtgactg cccatcggaa aattgttgca ggaggtgcaa ttctcgccac cacacgcaac      1800
     tgtgcaccac taacacatcc acccaaggga gatcaacaaa tgcagctgta acgacgagcg      1860
     acgtccgaaa cgccacccct tccacttctg gcgccacccc atctgatcca ccatcatctt      1920
     cggcttcgag agcgtcaaca tccacgatga acgctgccca ctcgggagtt actagttgta      1980
     attcacaaca accaggacga tcaaaagtgc ttctcgccac tgcagtggta atcgtcgtcg      2040
     acgacgctgg aagggagcat tttgcacgcg ctctactgga ttctgggagt gaatgttgtt      2100
     ttgctacctc tcaactatcg caaatgatga acgttagacg gacaagagtg gatgtgccgg      2160
     tcgctgggat cgggaaatca gcattgaagg tgaagcatca attccgagcc gtcatcaaat      2220
     ctcgtaactc agattataca actagtgtcg acatgctcat tttgcccaag gtcaccatgg      2280
     accttccctc cactgatatt gatgtatctc gctgggacat tccgtctaac atcactctcg      2340
     ctgacccagc attctttcaa tctagcactg tcgacattgt actgggagca gagattttct      2400
     ttgacctgtt tgctgtgtca ggacgcattt ttcttggaga atctcttcca tctctgacca      2460
     actcggtctt tggatgggta gtgtcgggaa gaactgccca atattcgtcc caaacttctg      2520
     tacgttgcaa tgtcgctact gttgccgacc tccatgactt catggaaaaa ttttggaaag      2580
     tggaggagga tccaactgcc actagctatt ccccagacga aacagcctgc gaggatttct      2640
     tccagcgtac ggtttctcgt gattcgtcgg gccgatacat ggtacgtctt ccgttcaagg      2700
     aggcaatgat tcagcgacta ggagacaacc ataaatcagc actgcatcgt tttcgtcttc      2760
     tggagaatcg tctttctcgg gacgcttcaa ttgcccagca gtatcgggat ttcatgaccg      2820
     aatatctccg attgggccac atggcgccgc ttagtagtgt tggagaagag attgaaccaa      2880
     aatactacct cccacatcac ccagtaattc gagacagcag cacgaccaca aaactgcgcg      2940
     tcgtattcga tgcgtccagc aaaacgagca gtggcatctc tttaaacgac gctcttctcg      3000
     tcggccccat cgtgcaggac gatttgcggt cgatcgttat gcgttctcgc acccacgaga      3060
     tagttctcat tgcggacgca gagaaaatgt accgccaagt gcgacactct tccgaagatt      3120
     atgcatactt gtgcattttt tggcgaattt ctccagagca accaatacag acatttgttc      3180
     tgcaaacggt aacgtacgga acggcatcgg ctccctactt agcatctcgc gtactaaaac      3240
     agctggcaag cgatgaggct gcgaactatc caatcgcagc gaaggtagtg gaaaatgact      3300
     tttacgtcga tgatcttttc accggagcag ctacagcagc agaaacaatc gagctcagag      3360
     agcaaatcga cggcatgctt tccaaaggag gattttccat gagaaagtgg gcatcaaatt      3420
     gtgaagccgt tctggagggc attccgtctg agaaccgggc tctacaacac tcgatcgact      3480
     tcgatcgaga tcaaacaatc aagacacttg gcctgcactg ggagccaggc acagatctcc      3540
     tcaaatataa aatcgatcta catttgccac tcaacaccgt tctcacgaag cgcctcacgt      3600
     tgtcctacat tgctcaactc tttgatccgt tgggactggt tggaccagtc gttgtaacag      3660
     ccaaggcata catgcagaca ctctggactc tcagagacga aaatggaaag atatgggaat      3720
     gggatcggga actcccagtg agtttgagag atcgatggat cgcctaccac tccgatcttc      3780
     ccactctcaa caacttgaga ataaatcgct ttgttcttct ctccaaacca ctagaaatag      3840
     agctccatat gttttcggat gcatctgaca tcggatacgg cacctgcgcc tacttgagat      3900
     ccaccgacag tctcggtcga atcaaagttg ctttgctgac ctcaaaatca agaatcgctc      3960
     ctctaaaacg ccaaagtact cccaggcttg agctgtgtgg agctttgctc tccgccgagt      4020
     tgtaccagcg catttccaca tctcttcaat tcccttttat tgcagttttc tggactgatt      4080
     ctatgaccgt aattaactgg ctaaatgcat caccctctac gtggaccacc tttgtcgcta      4140
     acagggtatc caagattcag catgcgacgc agaaatgcac ttggaaccat attgctggac      4200
     tccagaaccc ggctgatgtc atatcccgtg gctgtctggc atccgagctc atcagcaaca      4260
     agctttggtg gggtggccca gattggttgg agaaagagaa ggattactgg cctgttcccg      4320
     gacagcagtg tcgagcgact gatcacagcg atagtgagcg acgaagatct gcagcagtgt      4380
     ttgcttctac cactaccgaa ccttcattca tcgatgaata cagtggaaaa ttctccagct      4440
     acacaaaaat ggtccgtacc acagcgtact ggcgccgttt ctttgcgata ttgcgatcac      4500
     cgaaagaaga tcggaccttc accttcctaa caaccaacga actcaaaact gccgaacatg      4560
     cgctcataag gctgctgcag caacagtgct ttccagatga gtggaagcga ttgcaaagtg      4620
     gacaacacgt tgccaaaagt tcacgactga aatggtttca tcctacgatc tcctccaatg      4680
     aaaacatcat tcgaatcggc ggtcgtctgg gccagtccaa acagcacgac gacttcaagc      4740
     atcctatctt gctacctggc actcaccaac tatccacgtt gcttctttcg tcgtatcatc      4800
     aaaaactact acacgcagcc ccacagctga tggtcaacac agttcgatta aaatattggc      4860
     tcttgggggg gcggagtgcg gctaggcagg tagtgcacaa atgcgtcact tgtgtacgtg      4920
     ctcgaccgaa gctcatcgag caatttatgt ccgagctccc agcagctcgt gtgacggcag      4980
     ctaggccatt ctctcgtgtg ggcatagatt tctggggacc catacagcta caacctcggc      5040
     ataggcgcga cgcacccatt aaagcatacg tagccgtgtt cgtatgtttt gcgaccaagg      5100
     cagttcatct cgaactggtc gctaatttga ctacagccaa gtttttgcaa gcctttcggc      5160
     ggttcgtggc tcgccgaggc ctctgtgctg atgtatatac ggacaacggc aagaattttg      5220
     tgggagcagc gaacgaactc aagaagcttt tacgaagcag ggagcacaaa gaccaagttg      5280
     ctcaagagtg tgctgaaaac ggcatacgtt ggcattttaa ccctcctaaa ggatcccatt      5340
     tcggcgggct ttgggaggcg gcaataagat cggctcaaaa acatttcgtt cgagtattgg      5400
     gatcaaggct gattgcgcat gacgatatgg agactctgtt ggctcaaatt gagtgctgcc      5460
     ttaactctcg tcctctcact ccgttgagcg aggacccgtc cgacctaaat ccattgactc      5520
     cgggtcattt tctcgtgggc tcagctttaa aggcggtacc ggatgccaat gtcctttcga      5580
     ttccgtataa ccggttgacc caatggcagc aaactcaaaa ggccttccag gacatttgga      5640
     gcagatggca cctggaatat ttggcaactt tgcaaccgag agccaaatgg tgcaaccccc      5700
     cagtagaaat tcaacgtaat cgattggtca tcatcaagga cgagaatctg ccaccattac      5760
     agtggccaac tggcagaata cacgaactcc acccggggaa ggacggcgta gtccgggtag      5820
     tcaccttgca aactgcacgt ggattcgtca cccgaccggt ggcaaaatta tgtcttctac      5880
     cgatttcgat gccagccggt gtcggttcaa tatccaacga cggcgaagca tcaagcaatg      5940
     cggagcagac acagcaataa aatcatacaa tgcccaaatt ccttgggtcc aaggtaagga      6000
     cctgtccaat attttatgtt tcccctccgg atctaccggg tcttaatcat tacatgtaca      6060
     atcgacgact gaccgccatt catcgagcga cgacgaaaac atgtgaatgg atttcagtta      6120
     accccagcga taccaggccc tccataacca tcagagatga ttcgtgattc gtccagaaat      6180
     agttatttct gagggaggca gga                                              6203
//
ID   BEL-55_AA-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   supercont1.317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_AA_;
KW   BEL-55_AA-I; BEL-55_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.317; Positions  121981  121385.
XX
SQ   Sequence 597 BP; 175 A; 122 C; 138 G; 162 T; 0 other;
     tgtttgcgta caaatgcgaa gtggtacggt attatactcg acgagcgatg caacatgtcg        60
     atttagattg gatgtcgcac cacccctgag tcgtcggatc tacgagttgt tggatcttca       120
     acgggagtcg aatcagttca tcttagtgct catagtctct gagtactagc tgcgagttac       180
     tatgtacttt atcatccaga gcgggagaac gtacgatcct caacgagagc acgtagtaca       240
     ttctcgatag atgagccagc gaatcgtcgg gaaaaccaaa ggacagacag tacgcattta       300
     cacctcgccg ggatcggtag ttaactaatc agtgtgagca tttatgaaga tgtagagtgt       360
     gatagcaata aaatttctca ttagtagtgt aagaaattgc gaataaatca aattaaacgt       420
     aaagtagtgc caataaacga tacgtagtgt ttcctaaact gtgaatagtg gttgttatct       480
     gcttcgatac gaaaaggtta ctccgaacca tctaattggc tagctaacca tcctctcgac       540
     actggagtcg attgatgaca aagtgatgta agtcctcttc tcgccctgac cgctaca          597
//
ID   BEL-55_CQ-I repbase;    DNA;    INV; 3419 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_CQ_;
KW   BEL-55_CQ-LTR; BEL-55_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3419
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 263-263 (2011).
XX
DR   [2] (Consensus)
XX
CC   'AGATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           623..3418
FT                 /product="BEL-55_CQ-I_1p"
FT                 /translation="MDSTTKKKLTDAFRQRYRTERKVIFVQELLLGLYEPT
FT                 LAQLTVLYEFLVKTYREQSRHHLQVIGLIPDECLAAQEVEFEKYDALFFEV
FT                 ATALAELQIEAEQTVPSVTTPIAANRQRLQAKAWLKQMLKAWESNQVDIRD
FT                 SGIETQAPESQEVVLRDCGLSKPKPLHEQAEVYRKLEAITDRVATSVEEML
FT                 LPQHASNGSMPESVSKTISASLNQGPTSYNQCRDVVHQATKPFETRSDPAV
FT                 CRVSPGNSRDVAASASPEPLLPAKLCDSLPSGVTSQRRDTQSDTSNERNRK
FT                 HFVEPPKQDPVSHRVSAGIHEDVAASASLQPLIPSNLVDIQVAITTKHDEI
FT                 VNAEPLLPATELVRDQHNEANHSCVPWDSSPEVTSRLVKVPPVVIHDALVL
FT                 RSVHPDGKSSAVFDPSSKPAKPTNPQGHHRANQDGGLIPGKDPLAPSEVKA
FT                 PDKLEHIHTTPNSQPQTFDAHPSGRQTVRITSRTMPHSCVPISRHDPVTPT
FT                 LTGADQSKPEANRCSRIVHSVTAFSTTTVDFYITLKHWNPAKALSQRHACR
FT                 AMFVTSAPKKRFVVKAPDRTEDLAHKGSAGRQTLRHENVLQEPRPICIQQP
FT                 LKDHSKSDFNRSQAPYEFCKPRKRLLRILDDLTTRGAPVEDPTIVCILTHP
FT                 WDTGTKSPFIVTAESDQVQPLQQEVVQYSDDEVNQRCVHSDSGPQTKVRIR
FT                 KHTQNQINRVQPRQMTVPKYQTLMQTAAKAPDKRELPFPSSVSPGNSAFHV
FT                 NEQRRLEDLGFIGELEVKCSRSSHSWSYAERGSSNVFVVHQSRKPSHKSTS
FT                 NQESSASSPETRPLLIALEPSQPVQMNLVIAILGIQGSCHEPPSQDELFQR
FT                 TVDRRRRFWHPTIPPDELSHEPKSAQPSKRRNNFRGIHAVLPAIEDVGERR
FT                 DPADQSAAIHRKRCVGLTKELRDLNGGS"
XX
SQ   Sequence 3419 BP; 913 A; 1061 C; 844 G; 601 T; 0 other;
     tggtctcatc gaaccggaat tgaaccccgc ccaagcctcc aaaagtgaaa tcactggatt        60
     caaccgggac tagtccagcc gttccggaag cgtctggaat acgtctacca agcactcctg       120
     tacaagttcc ccacccgctg ccccatcgca gctcgacgtt tccgagcgac tgtccagccg       180
     tggaagtcat cggaagtcgg attcccggaa gtgaactcgc gcggatgcac aaagccggcg       240
     agttgttcct gcccaagttc ccccctgctg ccccatcgca gcttgaccgg tttcgagcga       300
     ctgtcccacc gcggaagttg cctgaattcg gattcccgga agtgtccacc ctaggaactt       360
     cctccaagca gttcacccga cgaactgctc tcgcgcggat gtacaaagcc gttgcgtcat       420
     cccactccaa gcattcccgg aacaacccat tccgagccga aaccgcgtac aaactagctt       480
     gcgcgtgtgt gtatgtgtgt ctccgccaaa aagtgtcgtc gtccagccga ggaggcgaac       540
     tttccccgac caaacagcag ccactgtccg accgataaca ggtgcctcga cgttgacttc       600
     cttagaccaa agggaagtag ccatggactc cacaacaaag aagaagctga cggatgcgtt       660
     ccggcagcgc taccgaacgg aacggaaagt aattttcgtt caagaactgc tgcttggtct       720
     gtacgaaccg acgctggcac agttgacggt gctatacgag tttttggtga aaacgtaccg       780
     agagcagagc cgacatcacc tgcaagtcat cggacttatt ccggacgaat gtctcgccgc       840
     gcaagaagtc gaattcgaga agtacgacgc gctgttcttc gaagttgcta cagcgctagc       900
     agagttgcaa attgaagccg aacaaaccgt accaagtgta accacgccga tcgccgccaa       960
     cagacagcgc ctgcaagcaa aagcatggct gaagcagatg cttaaagcct gggagtccaa      1020
     ccaagtggac atccgtgatt caggcatcga aacccaagca ccggagagtc aggaggtggt      1080
     cttgcgagac tgcggtcttt caaagcccaa acccctccac gaacaagcag aagtgtaccg      1140
     gaagttagaa gccatcaccg atcgcgtggc tacgtcagtt gaggaaatgc tgctcccaca      1200
     gcacgcatcg aacggatcaa tgccagaatc tgtttccaag accatttccg cctcgctcaa      1260
     ccagggtccg acgtcctaca accagtgtcg agacgtcgtg caccaagcca ccaagccttt      1320
     cgaaaccaga tccgatccag ctgtatgccg agtttctcct ggaaactcca gagatgtcgc      1380
     cgccagcgcg agtcctgaac cattgctgcc agccaagtta tgtgattccc tgccgagtgg      1440
     agttacaagc cagcgtcgag acacccagtc tgacacgtcc aacgaaagga accggaagca      1500
     tttcgtggaa ccacccaaac aagatccagt aagccaccgt gtgtctgctg gaatccacga      1560
     agacgtcgcc gccagtgcga gtctccagcc actgattcca agcaatcttg tggacatcca      1620
     agtcgccatc accacgaagc atgacgaaat cgtaaatgcc gaaccactgt tgccagcaac      1680
     ggaacttgtc cgagaccaac acaatgaagc aaatcacagc tgtgtcccgt gggacagtag      1740
     ccccgaagtg acgagcaggc tggtgaaagt gccacctgtc gtcatacacg atgcacttgt      1800
     tctgcgtagt gttcacccgg acggaaaatc ctcggcggtg ttcgacccaa gttcgaaacc      1860
     tgcgaagcca accaatcccc aaggacatca ccgcgccaac caggatggcg gtctcattcc      1920
     gggaaaagac ccgctagcgc cgtctgaagt gaaggccccg gacaaactcg agcatatcca      1980
     taccacgcca aacagtcaac ctcaaacctt tgatgcccat ccaagcggcc gtcaaactgt      2040
     tcgtatcacc agcagaacga tgccccattc ctgcgtgcca atatcacgcc acgacccagt      2100
     cacacccacg ctgaccgggg ccgaccagag caagcctgaa gccaacagat gttctaggat      2160
     tgtccattcc gtaacagcgt tctccacaac cacggtggac ttctacatca cactcaagca      2220
     ttggaatccg gccaaagcgt tgtcccaacg acatgcttgc cgggccatgt tcgtgaccag      2280
     tgcccccaag aagcggtttg tcgtcaaagc accagatcga accgaggact tggcacacaa      2340
     gggaagtgct gggagacaga cactacgaca tgaaaatgtg ctccaagaac cacgccccat      2400
     ctgcattcag cagccgttga aagaccacag caaatcggac ttcaaccgaa gtcaagctcc      2460
     ttacgagttc tgcaagccaa ggaagaggct actgcggatt ctggacgacc taacaacaag      2520
     aggcgcgcct gtagaagatc caacgatcgt ctgtatcctg actcatcctt gggatacggg      2580
     aacaaaatcg cccttcattg tcactgcaga atcagaccag gtgcagccac tgcaacagga      2640
     agtggtgcag tactccgacg acgaggtcaa ccaacgctgt gtccacagcg acagcggccc      2700
     ccagactaag gtccgaatcc gcaagcacac tcaaaaccag attaaccgcg tccaaccgcg      2760
     gcagatgaca gtcccgaagt accaaacgct gatgcagact gcggcaaagg caccagacaa      2820
     acgtgaactt ccctttccaa gcagcgtatc cccgggcaac agcgcattcc acgtcaacga      2880
     gcagcggcgt ctcgaggact tgggtttcat cggagaactt gaggtgaagt gcagccgatc      2940
     atcccactcc tggtcctacg ccgagcgtgg atcgtccaac gtcttcgtag tccaccagtc      3000
     gagaaagcca agccacaagt caacaagtaa tcaggagtcg tcagcatcat cacctgaaac      3060
     cagaccgctc ctgatcgcac tagagccaag ccaaccagtc cagatgaatc tcgtgatcgc      3120
     aattctcggc atccaaggta gctgccacga accgcccagc caagatgaac tgttccagcg      3180
     aaccgtcgat cgcaggcgca ggttctggca tccgacaatc ccaccggacg aactgtcaca      3240
     tgagcccaag tcagctcaac ccagcaagcg cagaaacaac ttccgaggga ttcacgccgt      3300
     cctaccggcc atcgaagacg tcggcgagcg acgagatccg gcggaccaat ccgcagccat      3360
     ccaccggaag cgttgtgtgg gcctaaccaa agagttgaga gacctcaacg gggggagta       3419
//
ID   BEL-55_CQ-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_CQ_;
KW   BEL-55_CQ-I; BEL-55_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-305
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 264-264 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 305 BP; 93 A; 84 C; 72 G; 56 T; 0 other;
     tgttcggtac aaccgaaggc tgaaaccccg ccgcgtttcc gacccgaaga cccaccgtgt        60
     tacgccaatc tgcttgaccg acgagcgaga aacgtcactc attgcgagag gccaaacaag       120
     tccacgtcca accttcgatc gagaaggaca cacagcagca acaaaaacag ttttttagag       180
     tagcaggagg aggaagagga aagtgggaaa aataaagtta gaaaattaag atctacggtg       240
     ttttttcctc ctgcgtgcct acgctccata cagtccaaca ctcccatgtc ggccaggccc       300
     gaaca                                                                   305
//
ID   BEL-55_DTa-I repbase;    DNA;    INV; 3445 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3445
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~97% identity to each other.
XX
SQ   Sequence 3445 BP; 1159 A; 774 C; 692 G; 820 T; 0 other;
     tttggtgacc ccgacgtgat ctcaccaaga gatcacaccc tagaacacaa cgttggagat        60
     atcttccata cgagtccttt tgcccaagtc gtcaacaagg cgacaggtta aagacacctt       120
     aggaagttga aagactggtc aataaggcga ccagctccgt caacgatttg gtaagtagtt       180
     tgtgatccca gcaggaaagg attcgtgaat ccaatcccgg acacattctt aaagttgtca       240
     acaggcgaca ctttgaaaac caaccccatc ctcacagcaa gtgccaccct ggcgacagag       300
     ggacacctga gatcgaaccc atcgatacaa aatcacaaaa ggaccggtca accagtcggc       360
     cacctttatc caccattact gttcagtctc ttgaccaaat ctggttgcga atcggaatac       420
     tcccaccggg tcagagatat agaacaggat tgaaatggtg aacagcatga gtgatgaaaa       480
     tccttcatcg gaaatgccaa aaattttaaa tgcacaacaa gaaataggca atgacattgc       540
     aaggttcatc aacaatttca aaaaaatgga cttgcacgaa aacaaaggcc tgaatatttc       600
     gaagcccgac tattggcaat taatgaagcc tgggagattt ttaatgaaaa cgagactcat       660
     ctgccagact cacaaaaagg atctaagtac gagaaatacg caaacgatct tcgatcgact       720
     tacgagagat atagtaagat ctttcaggaa ggtcttgact tactcctatc aagtggcagc       780
     aaggaggagg aaagttcgat caaatcttgg cagcaaacta tcacagaaat tagtgatttg       840
     ctttcatgca tggttcacga aacaaacatg cccgctataa agaaaatatg gtacctcaaa       900
     accgcactta ccggggatgc agaaaggcta atccgtcata tagaactcaa agaaaaatat       960
     tatgtacaag ctagggaaat acttgttgat tcgtatgaca agctaagaca gcttgcaaat      1020
     acagtaattc gcgaattatt gcatcaacag gcatcttgtg atagcgcaaa gtcattgcag      1080
     gaattatata tattaacgat tgagtccctc gcttcattaa ggggtttagg catcgacgta      1140
     tccacatggg attctctttt agtcgtcctg catacagaca agcttgacat gaccaaccgg      1200
     gctctgtatg agcaatcact tggaagctca tcagaactga agccgttaca tactatgctc      1260
     gattttttgg atcaacacag gaaaatcgga aaaatcatcg aaaaaggatc aaaagagctc      1320
     aacttgtgcc tcgtcaacaa ctggaaggtt atcgtcatgt gaattctgta aaaaggaaat      1380
     ccatccgcta tacagatgtg aagacttccg atcaaagccc acatctgata gattaaattg      1440
     ggtactaaca caaagaatgt gtgtcaagtg tttcaacact aagcacaaaa caaaggattg      1500
     ccgcagtcga aagtgcttta aatgcaacaa aaatcaccgt actcttcttc atcttgaaaa      1560
     taccgtagag cctagtacgc caattgtagg ggcggcgagt aataaaaatt ataatttact      1620
     cgccacggcc aagattgcag tacaggccaa caatgggcaa tgtgccaact ttacagcact      1680
     actggactct ggatcacaga taaatctgat tacagagcga atggcttcaa tgttattatt      1740
     gaagctccat aatgccaaat tacgaattga aggcattgga cgactaccga aaactagtaa      1800
     agcacgagtc aacattctag ttaaatcata gtggtttcac acaacggatt gaagcttttg      1860
     tattacccca gatcatacct gatcagccag cccagccact ttcgctagca gctacaaagt      1920
     tatccaaggg aatggccttg gcggacccca actttgacaa accaggaaaa atagacctgc      1980
     tcattggtgc agagcactat tattctttgc tgctcccaaa tcagaagagc tatacaaaca      2040
     aaggtccaat tctgcaaaac acaaatttcg gctggatctt agctggtaag gtgaatgcta      2100
     cggacgattt cacaatagtc ttagccaatt tatatacgag acaagacagc aacgtaagtc      2160
     ttgtaaatga ataactccca gtgggagaac tcaataaccc tgccatggaa tattctacga      2220
     gcaacgtggt accgatcgaa tggtggtttc ggaatggaac ctgattatat actacgactt      2280
     gggcccctac cacagtgaca tgcaagtctt gggctccggg attgctcagc tcgcccaaat      2340
     gtgcccagaa cttgataata agcaagcaaa gcggagcaat cgtaggacac ttccaacata      2400
     tttacgcaga atttcaatca ggaagtgaac taatgtacca ctcacgacaa cgcagatcac      2460
     catttaatgg aattggctat acatagcaaa caccttgttt ggagtactgg atataaatta      2520
     tgctgataat atggccaaaa caataagaaa ggttgaaagg aacaaagggt ttttaatgga      2580
     attgctaaac aaccaaacat caattgtgga ctcgaccatt aacttaataa aaagagataa      2640
     gtcagccacg gatattcgac tgaaaacctt ggagcgccat attcccgcga tcaaacagga      2700
     gaatggaagg tatcaggggg cataccttgc gcaagcgtac atggtgttga cagcccatct      2760
     gacgttatta accaccagtc ttcaacggat tcaaacagac gttgcaagaa gtgtacagct      2820
     catctccatc ccaacatgga actccagaaa atggactgca ttcgaattac ggtcaagtat      2880
     catcgtagtc aattcgcaca gtgattaatt cattagtttg actgaggaaa agtttcaagg      2940
     atgttgaact gtacccacca atgttcatct ctgtttcact catcaaacag tatttgacgc      3000
     agaagatcgg tgtgagtttg aactatttaa caataaatcc acctcacatt gcgaagtcgt      3060
     tgaatctaag tccgatgtgg tttggataaa ggcctcacaa ccaaacaaat ggatttatgc      3120
     tacacgttac tcaatggatc tttaatcagg tcaaaccaac cgactacacc tacaaagagt      3180
     tggacaacct acaagaaaac ctaaagacaa tagaccgcca agtcctgcct catcaactaa      3240
     gtcaggtgca gcatcatcaa attgctgcct acgctgcctt agccatatca gtcttgctaa      3300
     taatcgcgta catcatctgg aactccaaaa aagcaacttt acaccccaag gaacactata      3360
     gctcgacgca tccagcaacc tcaccacgca cgtttagcct ggacataaca taactggttg      3420
     aacatctgtt caacggccgg gagaa                                            3445
//
ID   BEL-55_DTa-LTR repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-55_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-572
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5629-5629 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 572 BP; 175 A; 145 C; 94 G; 158 T; 0 other;
     tgttaagact catcgaccta cataatataa ttattatcgc aattacgaat gtcgaacaaa        60
     gaatcatata tcatgacact tgctgccgat actgcaatta tacacctaga cattcagtat       120
     gcttaacagt ggtcaatctg ccgacgcagc gaaaatagct gacgccacaa ttcggaaata       180
     gagcaataac gtagcactgc atatagcact ttgacccact gcgagttatg cagaatagct       240
     gtaatttcat tttccctttc tacatatttt gttaacgtaa acacttttgt acctataaat       300
     accgttaagt ttgttcaata aaatcagtcc agtatcaatc tcagaatacc actgactgtt       360
     actcatctac catcgcaatc aacagaggct gtcgctgtgt cttcagatcc tcatcttgcg       420
     caccattctc cgccgtccac ctagttccaa gtgctgggtg cgacacctaa tcagtagaca       480
     gtttatgtgc tgtatgctac ccaacccccc gatacacaaa tcctgtgacc aggcgaagta       540
     acgccactca cgctaaggat aacgtattaa ca                                     572
//
ID   BEL-56_AA-I repbase;    DNA;    INV; 6131 BP.
XX
AC   supercont1.150;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_AA_;
KW   BEL-56_AA-LTR; BEL-56_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6131
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.150; Positions 1233993 1240123.
XX
CC   Positions [5185-5742] - Integrase core
CC   'CCCCAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..6129
FT                 /product="BEL-56_AA-I_1p"
FT                 /translation="MATSSDLQNCIACNMPDREENLVACDACKDRYHFSCA
FT                 SVDDGIREKCWSCSKCASAINVDDVSKSGKSGKSSRSSRSMRIQLQLMKIE
FT                 EERKAEEKLMLERQQLEKERQEKALQEKAAMEKRFRDEKYALLMAEANEDD
FT                 DESIASQKSRVSSKDKVNRWIKDHVGMLEDSDGQPYPVGGKSGSRDPPAKP
FT                 ANRVEEGAKRLETPLTSLGENVGKSKATEVLKQGATTSTPNQPNRLGPPES
FT                 FLQMQQAPERPSNQEDPPVPKQHALKSGPLLPHQIHQPVFQSVQQQVPRSA
FT                 AWPPNQQLEPWLFSSKPPLVPPSQQSVLLPLGQQTRQPTSTSFPPWQQSVS
FT                 QHAEGVPVVPPPRPPPGFPNPLSRSLSFQPDQSQAAWGQFQQQLAARQVVP
FT                 KELPVFSGNPEDWPLFVSSYRNSTEMCGYSDAENLMRLQRCLKGSALEAVR
FT                 SNLLLPTSVPQVMATLETLFGSPDRLLQTMLNKVRNVPAPKAERLETLVNF
FT                 GITVQNLVGHLKGANQQAHLMNPSLLNELVEKLPANIRLDWALHKQRAGFV
FT                 DLGTFSEYMMAITSAASDVTQFSDQDVHRANRSDRQRPKEKVFMNTHSTSD
FT                 VRKSGIVGGKLVDDKARPCYVCQSLKHRIRDCPRFKTLAVGDRWKLVSTHL
FT                 LCKICLVPHGKWSCKSNKVCEVGGCSKGHNTLLHPGQPEESSRSGASAPAV
FT                 VSVHRHLQSTILFRIIPVTLYGKETHVSTFAFLDEGSQLTLMDADIADQLN
FT                 IVGEVRPLCLTWTANIKRREAASQQVSLQISGSLSDAKFVLDEVRTVEGLA
FT                 LPTQTLQYSELTRQYPYLEGLPIQDYKKAVPKILIGMDNIHLSLSLRRRER
FT                 GAREPVATKTKLGWTVFGCVGDPAKMNESPSFHICECEELNGIHELVESFF
FT                 TEESLGIVAPRTLEGEEERRARELLESTTVQRVDGRFETGLLWRYDEVQFP
FT                 QSYAMAERRLACLHRRLKSSPELLANLNAQIADYQQKGYAHKASKQEIEEF
FT                 EPKRTWFLPLGVVINPRKPGKIRMIWDAAAKVNGISFNGMLLKGPDLLSPL
FT                 PKVLYHFRQRQVAVVGDVREMYHQFFIRQADRSAQCFLWSPDPSQTPEIFV
FT                 MDAATFGSTCSPCQAQFIKNLNAKNWTNEFPEAAVALVENHYVDDYLDSRD
FT                 TAAEMAKLATDVRTVHAKAGFEIRNWQSNSQQVLEKLGEKLTAQRKDFTSN
FT                 KTSHVERVLGMAWLPSEDVFTFILTLPEDLQRLVSGDSAPTKRRILRFIMS
FT                 LFDPLGLISHVLIHGKIIIQDLWRSKVGWDDPISEEVDRDWRRFVDVFDRL
FT                 NQMQVPRCYFPEYDRNSYDTLELHMFADASLSAFSCVAFFRIIDRGQVRCS
FT                 LVASKAKVAPLKPLSIPRLELNAALIGSRLAKSITDSHSLEIKKRYFWTDS
FT                 RTVLLWIRSDARRYRQYVAVRIGEILDVADDATKWKGAPDLNPTNRWFRGP
FT                 DFLYKMESEWPQQGIEYVEDPAELRAAAVHVHSEVINEVFIECSRFSKWER
FT                 LLRSTAYVFLFIRQCRGTRSTGEASGRLDQEDFQKAERVLWRSAQKDAYSN
FT                 ELKALEQIRSGNENEAISEVQKNSPLRKLSPFIDEGGVLRMGGRIGASPFA
FT                 TYDAKFPVILPKRHKVTDLIIDKYHRRYGHQNGETVVNELRQKYHVSNLRA
FT                 EVRRVARNCQWCRTYKAEPQIPRMAPLPKERVTPFVRPFSSVGIDYFGPYS
FT                 IKIGRSLVKRWVELYTCLAVRAVHLEAAASLSTESCMLALRRFIARRGAPE
FT                 KIFTDNGTNFVGAERQLAKQLKDVNLKLSESFTNRNTKWIFIPPASPHMGG
FT                 AWERMVRAVKAAMNSMNHPRTPTEEVFLTVLCEAESMVNSRPLTYMPLEHS
FT                 EQEALTPNHFILLSSDGVKQTEKIPTEMRTIQRSDWKLCQHILDQFWCRWI
FT                 HEYLPAITRRTKWVAEAKAIAVGDVVFLVDGSVRNRWTRGVITAVLPGKDG
FT                 RIRQATVRTSTGTFRRPVAKLAVIDILPESKAEEPEQLYGAG"
XX
SQ   Sequence 6131 BP; 1684 A; 1409 C; 1666 G; 1372 T; 0 other;
     ttctttaaag aattccgacc gaggcgttgg tcgaagacgg atttccagca gaaccaccat        60
     aggagaggct gtttgacgat ggcaacgagc tcggatttgc agaattgcat tgcatgcaat       120
     atgccggacc gggaggagaa tttggtagcc tgtgatgcct gtaaggatcg gtaccatttc       180
     tcatgcgctt cggtagacga cggtatccga gagaaatgtt ggtcatgcag caaatgtgcc       240
     tctgccatta acgtggacga cgtgtcgaaa tccggaaaat ccggcaaatc cagccggagc       300
     agtcggtcga tgaggattca acttcaactg atgaagattg aggaagagcg taaggccgaa       360
     gaaaagctga tgttggagcg acaacagcta gaaaaggaac gccaggaaaa agctttgcag       420
     gagaaagcag ccatggaaaa gcggtttcga gatgaaaaat acgcccttct gatggctgaa       480
     gcgaacgaag atgacgacga aagcattgcg agtcagaaaa gtcgagtgag cagtaaggat       540
     aaagttaacc ggtggataaa ggatcacgtt ggcatgttag aagacagcga cggtcaacct       600
     tatccggttg gtggaaaatc aggatctagg gaccccccag cgaaaccagc aaatagggtg       660
     gaagaaggag caaagcgcct tgaaacccca cttacgtcgt tgggcgaaaa tgtcggcaaa       720
     tctaaagcaa cggaagtact gaaacaagga gccaccacat cgacgcccaa tcagccaaat       780
     cgtttgggac caccagaatc gtttttgcag atgcaacaag cacccgaacg accatcgaac       840
     caggaagatc cgccggttcc gaagcagcac gctttgaaat caggaccact gctgccccat       900
     caaatccacc aaccagtttt ccagtcggta cagcagcaag ttccacgatc tgcagcatgg       960
     ccaccgaatc agcaattgga accgtggcta ttttcttcga aaccaccatt agtgcccccg      1020
     agtcagcaat cagtactact tccgctgggc cagcaaacac gacagcccac ctcgacgtca      1080
     ttcccaccat ggcagcaatc tgtctcacaa cacgccgaag gtgtgccggt ggtgccaccc      1140
     cctcgaccgc ctcctggatt tccgaatcca ctaagcagat cgctatcgtt tcaacccgat      1200
     cagtcccaag ctgcatgggg ccaatttcag cagcagctgg cagcaaggca agtagttccg      1260
     aaggagctac cggtgttctc gggaaacccc gaggactggc cgcttttcgt gagtagctac      1320
     cgaaactcaa cggaaatgtg tggctattca gatgcagaaa acctcatgag gctgcagagg      1380
     tgcctcaaag gcagcgcgct ggaggctgtt cgaagcaatt tactgttgcc tacgtcagtc      1440
     cctcaagtca tggcgacact agagacgctg tttggaagcc ccgaccgact gctgcagacc      1500
     atgttgaaca aggtgcgaaa tgttccggca ccgaaggcag aacggttgga aacattggtc      1560
     aacttcggca taaccgtgca aaatctagta ggacacctga aaggagcgaa ccagcaggcc      1620
     catctgatga acccttcgct gttgaacgag ctagtggaga agttgccagc caatatccgt      1680
     ttagactggg cactccacaa gcagcgtgct ggattcgtag atctgggaac cttcagcgaa      1740
     tacatgatgg cgataacttc agcagccagc gatgttacgc agttcagcga ccaagacgtc      1800
     caccgagcca accgaagcga taggcagcgt cccaaggaga aggttttcat gaacacgcat      1860
     tccacatcag atgttcgtaa gtcagggatt gtcggaggta agctagtaga cgataaggca      1920
     agaccgtgtt atgtttgtca gagcttgaag catagaatca gggactgtcc tagatttaaa      1980
     acattagctg tgggggatcg ctggaaattg gtcagtacgc atctactgtg taaaatttgc      2040
     ttagtgccgc acggcaagtg gtcatgtaag tccaataaag tgtgtgaagt tggaggctgt      2100
     tccaaagggc ataatacttt gttacatccg ggtcagcctg aagagtcttc acgttccgga      2160
     gccagtgcac cggcggtcgt ttctgtgcat cgccatcttc agagtacgat cctatttcgc      2220
     attatcccgg tcacgctcta cggcaaagag acacacgtat caaccttcgc atttctcgat      2280
     gagggttcac aactgaccct gatggatgcc gacatcgcag atcagctgaa tatcgtcgga      2340
     gaagtacgtc cgctgtgcct cacttggaca gcaaacatca aacgacgaga ggccgcatca      2400
     cagcaagtta gtttgcaaat ctctggttca ttgagtgatg cgaaattcgt gttggacgaa      2460
     gttcgcacgg tagaaggttt agctctaccg acgcagaccc ttcagtacag cgagctgaca      2520
     aggcagtatc cgtatttgga aggacttcca atccaggact acaagaaggc ggttccaaag      2580
     atccttatag ggatggacaa cattcatctc tctctttctt tgagaagaag ggagcgcggt      2640
     gcacgagaac ctgtcgctac gaaaacgaaa ttaggttgga ctgtattcgg ctgcgtagga      2700
     gatccagcga agatgaacga atcgccgtcg tttcacattt gcgagtgtga ggaactaaat      2760
     ggaatccatg agctggtgga aagtttcttc acggaggaga gtctgggcat tgtggcgcca      2820
     cgtacattgg agggtgagga agaacgccgt gcaagggagc ttttggaaag cacaacggtg      2880
     caacgtgtag atggtcgttt cgagactgga ttactgtggc gttatgacga agtacaattt      2940
     ccacaaagtt atgccatggc ggagagaaga ctagcctgcc tgcaccgtcg actgaaatcg      3000
     agtcccgaat tgctagcgaa cttaaatgcc caaattgcag actaccaaca aaagggatat      3060
     gcacacaaag cgtcgaagca agaaattgag gagtttgaac ccaaacgcac ctggtttttg      3120
     ccgttgggag ttgtcattaa tccacggaaa cccgggaaga tccgcatgat ctgggacgca      3180
     gctgccaaag ttaatggcat ttcgttcaac ggaatgctac tgaagggtcc agatcttcta      3240
     tcgccactgc caaaggtgtt gtaccacttt cgccagcgac aggtagcggt ggtaggagat      3300
     gtgcgggaga tgtaccacca atttttcatc cggcaagctg atcgttctgc gcaatgtttc      3360
     ctttggagcc cggatccgtc gcaaaccccg gagattttcg taatggatgc agcaaccttc      3420
     ggttcgacgt gctctccgtg tcaggctcag tttattaaaa atctgaacgc gaaaaactgg      3480
     accaacgagt tcccggaagc agccgtagca ctggtagaaa accactatgt ggacgactat      3540
     ttggacagta gggatacagc agcagagatg gcgaaactag ctacggacgt tcgaacggtg      3600
     catgccaaag ccgggttcga aatcaggaat tggcagtcga attcgcagca ggtgttggaa      3660
     aagctaggtg agaaactcac agctcagcgg aaagacttca ccagtaataa gaccagccat      3720
     gttgagcgcg tactagggat ggcttggctt cctagcgagg acgtgttcac ctttattcta      3780
     acattaccgg aggacttaca gcgactcgtg tcgggagatt ctgcgcctac gaaaaggagg      3840
     attttacgat tcatcatgag cctgtttgat ccccttgggc ttatatctca cgtcctcata      3900
     catggaaaga tcatcattca agatctgtgg cggagtaaag tcggatggga tgatcctatt      3960
     tctgaagaag tcgatagaga ttggagaagg tttgtagacg ttttcgatag gctgaaccag      4020
     atgcaagtgc cgcgctgtta ctttcccgaa tacgacagga acagctatga tactttggag      4080
     ctccatatgt ttgccgatgc aagtttgtca gcgttttcgt gtgtggcgtt cttccgcatt      4140
     attgatcgag ggcaggtacg gtgttcgttg gtggcttcga aggcgaaagt agcaccgctt      4200
     aagccattat cgattccgcg actggagttg aatgctgcgc taatagggag tcgtttagcg      4260
     aagtccatta ccgacagtca ttccctggag atcaagaagc gatacttctg gactgattcc      4320
     agaaccgtgc tactgtggat acggtctgat gccaggagat atcgtcagta tgttgccgtg      4380
     cgaataggtg aaatcctcga tgttgccgat gatgcgacga aatggaaagg cgcgccagat      4440
     ctgaatccaa ccaaccgctg gttcaggggt ccggattttt tgtataagat ggagagtgaa      4500
     tggccacagc aagggattga gtacgtcgaa gatccggcag agttacgggc agcagcggta      4560
     catgtgcaca gtgaagtcat caacgaagtt ttcattgaat gcagccgatt ctcgaaatgg      4620
     gaacgtcttc tgcgatcaac tgcgtatgtt tttctgttca ttcgtcagtg tcgtggcaca      4680
     agaagtactg gtgaggcatc tggaaggctg gatcaagaag atttccagaa agcggagcgt      4740
     gtattgtgga gaagcgcgca aaaggatgcg tattcaaacg agttaaaagc tttggagcag      4800
     ataagatcag gaaatgaaaa cgaagcgatc agcgaagtgc aaaaaaatag tccgttgagg      4860
     aagctatcgc cgttcatcga tgaaggtggt gtgctgcgca tgggcggtcg cataggagct      4920
     tcgccatttg ctacatacga tgcaaaattt cctgtcatat tgcccaaaag acataaagtt      4980
     accgatctca tcatcgacaa gtaccatcgg aggtacgggc atcagaatgg tgaaactgtg      5040
     gtaaacgaac taaggcagaa ataccacgtt tcgaacttgc gcgctgaagt tcgcagggtt      5100
     gctaggaatt gtcagtggtg ccgcacttac aaagcagaac cgcagatccc gcgaatggct      5160
     ccgcttccaa aggagcgtgt tacgccattt gttagaccgt tttcaagtgt cgggatagac      5220
     tattttggcc cgtattccat taagatcggt aggagtctcg tcaagcgatg ggtagaactt      5280
     tacacttgcc ttgcagttag agctgtgcat ctcgaggccg cggcatctct gtcaacggag      5340
     tcgtgtatgc tggcactccg tcgatttatc gctagacgag gagcaccgga gaagattttc      5400
     accgacaacg gtacgaattt tgttggcgca gagcggcagc tagcgaaaca actgaaggac      5460
     gtgaacctga agctatctga aagtttcacc aatagaaaca ctaaatggat ttttatccct      5520
     cctgcttccc cgcacatggg cggtgcgtgg gagagaatgg tcagggcggt taaagctgcc      5580
     atgaactcaa tgaaccatcc aagaacccct actgaagaag tgttcctgac cgttctgtgt      5640
     gaagctgagt ccatggtcaa ttcacgacca ttaacctaca tgccattgga acattcggag      5700
     caggaagcac tcactcctaa tcactttatt cttcttagct cagacggagt gaagcaaact      5760
     gaaaagatac caacggagat gaggacaatt caacgaagtg actggaaact ttgtcagcac      5820
     attctagatc agttctggtg cagatggatc catgagtatc taccagccat tacgagacgg      5880
     accaagtggg ttgcagaagc taaagcgata gcagtcggtg atgttgtctt cctcgtagac      5940
     ggaagtgtaa ggaaccgctg gactcgaggt gtgataacag ctgttttgcc gggaaaagat      6000
     ggacgtatta ggcaagcaac ggtccggact agtacaggaa catttcgcag gcccgtcgcc      6060
     aaactggcgg tcatagacat tcttccggag agtaaagctg aagaaccaga gcagctttac      6120
     ggggcgggga a                                                           6131
//
ID   BEL-56_AA-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   supercont1.150;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_AA_;
KW   BEL-56_AA-I; BEL-56_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-539
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.150; Positions 1233454 1233992.
XX
SQ   Sequence 539 BP; 170 A; 86 C; 123 G; 160 T; 0 other;
     tgttggcaga agcgtagcgc acacagctga acgtgctgaa agttgccata tgcaggaacg        60
     gtcacccggt agcgaggagg ctgccgaatg aaacgagccg tcgtgagaga atgtgagaac       120
     tagatcgata tgagtcagca gtatagggag aagcagaagg ctacgtatgc tatagttctc       180
     gcactgtttg ttggcatagt tgcaattaat atttagaaat aattattgag tatagaaata       240
     cggaagttct acaacatatc cattgtgagt atataaaatt taatgaattt attgcgctga       300
     attgtaaccg tgaacatcaa attataggtt gaactacaaa acgatatttg ctattgttct       360
     tattgtgtcg actagaagta gggtgaattc gacaggtcac cggaattgta agatttttct       420
     tatactcgct aggttgataa ctaattgttt gaatatttta gctttaaagc gccgtttaat       480
     aaaacctttg aacagctaaa agttccgtga atctgtattc ctacttcgac gtgacaaca        539
//
ID   BEL-56_CQ-I repbase;    DNA;    INV; 2554 BP.
XX
AC   AAWU01004237;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_CQ_;
KW   BEL-56_CQ-LTR; BEL-56_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2554
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 265-265 (2011).
XX
DR   GenBank; AAWU01004237; Positions   47259   44706.
XX
CC   'CTATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..2553
FT                 /product="BEL-56_CQ-I_1p"
FT                 /translation="MSDSTIVCGACGRILTDAEERTTCGNCNETYHSCCVY
FT                 STAADTKWYCPEGCLQRNLENAQAKDRSDPASSASGQEASGQPAVVAESNM
FT                 SEVAEAALEQHAEEFDADRWFREKQIEIEMELAARQAQIDRELRKREERMA
FT                 EAFQKAMRRQEVALEVGLKKKANHERRMAELERSFQRRSSLIDKQLEQIKF
FT                 NCEKPLPSSHIIDSAMEETAKTGKKNEREDDLPETESGGSLERRTKDADEN
FT                 GAKLKTQEFVSQGPNGLGQQCSGLEKAQLAAGGRLTRQSPCYPNDPEQWPE
FT                 SLGTREGSSKAHGVTDARNLVGLRHGIEGAAQDTGHCPNHWSEPVFEKLQP
FT                 TLECPELLPVSHPERAHELQHPKADGLAKLTSLENAGNILCEHMEAKDLTL
FT                 VNPLANEDPASVLPDGEERHWAKKKTEATNLPSRINPNTKAGTRRRRRQLE
FT                 EATLYCRKKGSSSSSRANTQQQKCYDHQLRFCGEIGKLFDDKLFKIVTRWE
FT                 IGDGVKDQLKDRCQSNARGKLYILEDLPVVNSVSISAPEGYVNAIIFGTGP
FT                 GQRYGGISANANDAATVPLVVGVTAFRPRLGDAEGKNGLQQKAEVRRAWPR
FT                 FTRMQGWISTVSSTGGNNWFLSTEHLELWMSHHKLQAEELSALYSSRAAAK
FT                 DSRLEDMIGRRNRPAGTYAELVSGGTSEPWISEKMAGGLEHGSEPDAVLQE
FT                 VDRDYTKAEMARDLMDEAKDHVLMNGGRYSGSKGNKLPQSNSTPLWIPRIL
FT                 AKKMGHRPTSVDAGDVDAHMDATHGRANQVCAISEENLQVLNGAQKTTAGN
FT                 VGKATNLDERGAVDLAVWKFLVNPTHRMARRMLRAG"
XX
SQ   Sequence 2554 BP; 724 A; 620 C; 815 G; 395 T; 0 other;
     aactcaaaaa ttaaatacgg gttcggaaac ctcaccacaa tgagcgattc aacgatagtc        60
     tgcggcgcat gcgggcgcat tctcaccgat gcggaggaga ggaccacctg cggtaattgc       120
     aacgagacgt accactcctg ctgcgtgtac agtacggcgg cggacacaaa gtggtactgt       180
     ccggaaggtt gtttgcagcg gaacctggaa aacgcccaag ccaaagacag atccgatcca       240
     gcaagttcag caagcggaca agaagcaagc ggacagccag ctgtcgtggc cgaatcgaac       300
     atgtcggagg tcgcagaggc agcgctggaa caacacgcgg aagaattcga tgctgatcgt       360
     tggtttcggg aaaagcagat cgagatcgag atggagctgg cagcacggca ggcgcagatc       420
     gatcgcgagc tgcggaagag agaagaaagg atggccgaag cattccagaa ggcaatgcgg       480
     cggcaagaag ttgccttgga ggtcggccta aagaagaagg cgaatcacga gaggcgaatg       540
     gcagagctag aaagatcgtt ccagagaagg tcgtcactga tcgacaagca gctggagcag       600
     atcaagttca actgcgagaa gcccctgcca tccagtcata tcattgattc agcgatggag       660
     gagacggcaa aaaccggcaa gaagaacgaa cgcgaagacg acttgccgga gacagagagc       720
     ggtggaagtc tggaaaggcg cactaaagac gccgacgaga acggggcgaa gctgaaaacg       780
     caagaatttg tcagccaagg tccaaacggg ctggggcagc agtgttccgg acttgagaag       840
     gcacaactgg ccgcgggcgg gaggctcaca agacagtctc cttgttaccc gaacgaccca       900
     gaacagtggc cagagtctct tggaacgcga gaaggatcct cgaaagccca tggagtgacg       960
     gacgcacgaa accttgtggg gcttcgccac gggattgaag gtgcggcgca ggatactgga      1020
     cactgtccga atcattggtc tgagccagtc ttcgagaagc tccagccaac gttggaatgc      1080
     ccggaactgc tgccagtaag ccacccagag agagcgcacg agctacaaca tccaaaagcg      1140
     gacgggcttg cgaagctcac atcgctcgag aacgcaggga acatactgtg cgagcacatg      1200
     gaggcgaagg atctcactct ggtgaatccg ctcgcgaacg aagacccagc tagcgtactc      1260
     ccggacgggg aggaacggca ctgggcaaag aagaagacgg aagcaacgaa ccttccgtca      1320
     agaatcaatc cgaacacaaa agccgggaca agaagaagaa gaagacagtt agaagaagca      1380
     acactctact gtcgaaagaa gggcagctcg agttcgagca gggccaacac gcaacaacaa      1440
     aagtgctacg atcaccagtt gcggttctgc ggagaaatcg gaaaactgtt cgacgacaag      1500
     ctcttcaaga tcgtcacaag atgggagatc ggcgacggcg tgaaggatca gctgaaggat      1560
     cgctgccaaa gcaatgctcg cgggaagctt tacattctgg aagatcttcc ggtcgtgaac      1620
     tcggtcagca tcagcgcgcc cgagggatac gtcaatgcga tcatatttgg aacgggtccg      1680
     ggtcagcgat atggaggaat ttcggcgaac gcgaacgatg cggcgaccgt cccgttggtc      1740
     gtaggcgtga cagcttttcg accgagactc ggagacgcag aaggtaaaaa cggcctgcag      1800
     cagaaggctg aggtaagacg cgcgtggcca cgattcacac gaatgcaagg gtggatttct      1860
     acggtgagct caaccggtgg caacaattgg tttctgtcta cggagcatct ggaactgtgg      1920
     atgagccacc acaagttgca agctgaggaa ctgtcggcgc tgtacagcag ccgtgctgcg      1980
     gctaaggaca gtcggctgga agatatgatc ggccgaagga accggccggc gggaacttac      2040
     gcggagttgg tctctggtgg cacgagcgag ccctggatct ccgagaagat ggccggcgga      2100
     ttagaacacg gaagtgaacc agatgcggtg cttcaagaag tcgaccgaga ctacacgaaa      2160
     gcggaaatgg cacgcgattt gatggacgaa gcaaaggacc atgttctgat gaacggtggt      2220
     cgctacagcg gcagcaaagg aaacaagctg ccgcaaagca acagcacccc gctatggatt      2280
     ccaaggattc tagcgaaaaa gatggggcat cggccaacga gcgtcgatgc tggcgatgtg      2340
     gatgcgcaca tggacgcaac gcatggccgg gcgaatcaag tctgcgcgat ctccgaggag      2400
     aacctgcagg tgctgaacgg cgcgcagaaa acgacggctg gaaacgtcgg gaaagcgacg      2460
     aacctggatg aacgaggagc agttgactta gcggtttgga agtttttggt aaatccgacg      2520
     caccggatgg cccgacggat gttacgggct gggg                                  2554
//
ID   BEL-56_CQ-LTR repbase;    DNA;    INV; 687 BP.
XX
AC   AAWU01004237;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_CQ_;
KW   BEL-56_CQ-I; BEL-56_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-687
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 266-266 (2011).
XX
DR   GenBank; AAWU01004237; Positions   44705   44019.
XX
SQ   Sequence 687 BP; 236 A; 118 C; 167 G; 166 T; 0 other;
     tgttacgacc gctgagatgg ccacactgcc gaacggtgca gcgctggcgg tgtaaccgcc        60
     cgactccacc tcaactgtca acgtgcgcgc gaagaagaga gaaaacaaaa acaaagtgcg       120
     tgtgtgacac ccagtcacaa gaaaccatgc tgggcaagtc accatcgcga attattagga       180
     aaagtaagaa ctttttgctt agtttagctt ttcggataag taggggaaag attgtgtaga       240
     cgctgtagaa gttgagtttt tattgaactt gctcacatca ggcacacctg taagtaaaga       300
     agaagttgaa atttagtgcg attgattgtg aaattaactt caaatactta ctcagctgcg       360
     aaagacgtcc gggaaactgc gccactaccg taccgtcagt tggtgctaaa tcgtaccgcg       420
     gtgataacct gtaagtttac ctgaaaagaa acacaaacaa atattaataa aatacacaaa       480
     aatataggaa aaggtgaacg gaaaggtgaa ggataaggag gaatgaggag aggaaggagt       540
     cgtgatttgt aggaaagagg aagactattt aagtgagtat ggagattgaa ggaaatgtaa       600
     acagtaatta atttgaaaaa tatatttaca gtttttgagc tgttttcaca ctgctacaaa       660
     aattggtctc tctggttcat ccgaaca                                           687
//
ID   BEL-56_DTa-I repbase;    DNA;    INV; 5693 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   19-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5693
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are ~98% identity to each other.
XX
SQ   Sequence 5693 BP; 1976 A; 1117 C; 1194 G; 1406 T; 0 other;
     aagtggtcct tcgatcgcag gatcgatatt tcgacactaa caccttaaaa tacagtccat        60
     aacaacactg cgaatcaaaa atgtggaaat ggaatcagca gcagattacc aacattgatt       120
     cgtggaaatc ccaatcgctc cgagacgtcc atttcgcagt gtatcgaaaa ttcgtcacgg       180
     aaaccttaat aaagaggcaa cttcgcgcct ttggaggcct ttcttacagc gaatccgaaa       240
     aacaggaaca tgtacgggaa atagggaagg aaatcagtcc aaacgcgttg ttgcgagtct       300
     gtgcattctt cgacataagt gtgggtgaga acgcgacaca aaacgaattg gctacaaaaa       360
     tagtagaagc cataacgttt gtcgccaccg aagacactga cggatccgat gcttcagatc       420
     tgacaaaaaa gttggtcatc ctggaacaga tacaagatgt ggatacggaa aatgttgaaa       480
     tacagcgagc aattttcaac aaagaagaca aactcatgga aatcaaatgc aaacttacgg       540
     aatcagaaaa caacccttct tccgccaata aagagaagtt ggctgtaatg cgtgagtcca       600
     tagaaatgct ggaaagagaa ttgaatcttc tttttgcaga aaaagatgca ctggtcagta       660
     agaaaaatgt tctaaaagct aaatctgttc tttcagagta ttctgcaaga aattctattc       720
     gatccaacaa ctccattcga tcagcgattc agaatcagga acagcgcgag cgtacatcgg       780
     aatggatacg tcatcaccag agccaagatc agcatccctt acacaacttt gaagaaactc       840
     aggattcaaa ccaatcaacc acaaaaatga taacacaaat gctagcacgg caaaatttta       900
     gtggacagaa cttggagttt gatggaacat ctgcgcttaa atggaaacat tttattaccg       960
     agtttgaagc aactagccaa cgttgtgggt tttcgaatag agaaaatgtt catcgactct      1020
     caaaagccct gaaaggtgcg gcaagagcaa aagtggagct actgcttatc gctgctcaag      1080
     agccaagcag aattatatcc attctaaaca aagcatatgg tggtcctgaa aacattgcac      1140
     tggaactaac aacaaaagcg gacaaaataa agaaagtaac agagctctca gattttgaag      1200
     aattcaattg caacattcaa aacatttgcg ccgggttaga atacacagac agaaacttag      1260
     tcgacaccca aaggcttttg gcaatggcga ttggaaagct attagagcaa tacctccgag      1320
     attggggcac atttttaaaa gagaagaaaa tacgtgcctc attttgcaca tttcaaaact      1380
     tagccgcttg gtcgcaaaaa caatctgatt tgataaacga tattgccttt tttaaaaaaa      1440
     ttactgtaat caacaatcaa gcgacagcca cggaaccgga acaattggaa aaaactacaa      1500
     cgagctcaac aaagggtaaa cccaagacaa tgtgtcccat ttgcagcgag gaacgacatg      1560
     ctcttaccaa atgcaacata tttttaaaag cagacgtaaa aaaacgctgg gacaaggcca      1620
     accgacacaa attctgttat tgctgtttga agtaccataa aagcccatgc aatgaaagac      1680
     agcagtgtaa aatcgataac tgcgagaaat tccataatca gttacttcac aaacggccaa      1740
     atacaaatgt cgcacaaaac ataacaggat gtgtttcgga atccaaaaga gaagcattgc      1800
     tcaagatggt tgctgtcaca gtctacggtc aaaagggctc caaggacatt gttgcatttt      1860
     tggatgaagg cagcacatca acaattatgg atatgagttt ggctcgagaa ggaatagaag      1920
     gcgaaagcaa accattctgc ttcagttgga caggaggcgt atatagatac gaatcagatg      1980
     ccaaatcagt tagcataact attagtgcga aatgtggtaa taaataccac ctagaagatg      2040
     tatggctgat caatgattta aagcttccat cgcaacaagt taattacaac aaactaaaag      2100
     aactcgttcc caaaaatctg gtagatctaa ataatctgca ggacaagcaa cccatgcttc      2160
     tgattggtca acgacatgct aatttaatca gtactagagg tattatcaac ggagacggga      2220
     ttcgcccgat gttatctaaa accaagctgg gttgggtaat acatggacca gtccaaattg      2280
     aatcaaaagg agcgaatttt acttgctgcc aaataagcga tgaaaacatt cagcagatga      2340
     tcagacagca gttcaccatt gaaaatttcg gagtgtgtgt tgttaagtca gacaagacaa      2400
     tttcagcaaa cgaaaagtta gcgatagata aggcggagtc atcaattact caaattggca      2460
     acaattatga attgggccta ccctggaaag atgaacaagt caaactccct gatagtaaac      2520
     cgatggctat ccagcggctc aaatgtcttg aacgcaaact attacgagac aaagatttag      2580
     caaaaaaata ccaagatgaa atacacaaat tgttggaaaa aggttatgct attcagctaa      2640
     cagatatgga tgtcttaaaa tcgcctaagc tatggtattt acctcatttt gcagttgtta      2700
     accctagtaa acctggtaag gtcagactcg tctttgatgc tgcggctgaa tgcaatggaa      2760
     cttctcttaa caagaatctt ctcactggcc cagactggtc aacatcgatc gtgggcatac      2820
     tgatgcgttt tcgattacat caggtcgctg ttgttgccga tattcgggag atgtttaatc      2880
     aggtgcgtat taaagacaac gatacagctg cacaatgctt tctttggagg gatttaaaac      2940
     agaatagtcc gatgaaaata taccaaatga aagccatgct tttcggcaca acttcttcac      3000
     cgtttttagc tcaatttgta aagaatttca atgccaagaa atatcaagaa gaatatccag      3060
     aagcggtaaa ggctattatt gcaaatcatt atgttgacga ttatttggat tccaaaccaa      3120
     acgccgacct acttatcaac ataataaact ctgtagtaga catccattca aaagcaggat      3180
     ttgaactgcg acaatttctg tcaaacagta aggaagttat gagtaacatt cctgaacatt      3240
     taagatcagc aaaagagatt acaatgatcg gggataaggc ggatgttcaa caaaaggtac      3300
     tgggtatggt gtggaatgcc agcgacgaca tttttacata ctccacaaaa accatgcacc      3360
     ggctaaaaaa tgaactttta aatggaaatg atataccaac gaaaagaaac gttttgtcgg      3420
     ctgtaaactc tttgtatgac cctttaggcc tcatgacccc ggtaacaata aaagggcgga      3480
     tattgatgcg tgacgtgtgg cagtctggaa ttaactggga cgataaactt aaaggagatc      3540
     tgctactcaa atggaaaaat tggttgtcgt ctttattatc tattgaaacc attaaaattc      3600
     cacgatgtta cagctctaat ctcacaaaag cggatcgcat cgaattccac atattcaacg      3660
     acgcgagtag caaggcctat tcctcagcag tatacataag atgctgttat caacaagaag      3720
     accgctggga ctttgatgta tctttagtcg catcaaaagc aagggttgcc ccaatagcgc      3780
     ctgtcacaat tcccaaactt gaaacaatgg cggctgtttt aggatgccga ctagctgaat      3840
     tagtccaaaa cgaattggaa atacaacctc atcagcgtta tttctggaca gattcaagaa      3900
     cagtccttgc ttggataaat agtgataaac gcatggaagt atttgtagct aaccgaattg      3960
     gtgaaatatg tgaaaaaacg gaacgaaagg agtggaattg gttatcaacc aatgaaaaca      4020
     ttgcggatgt tataacccgc gacaacatat caacccataa gcaggaaaaa tggtttactg      4080
     gccctctgtt tcttcagaag ccgtcctctg aatgggaaat aattcagcca gtatttgaga      4140
     atgacaacca cacagagata gtcatggttg ttcaagaagc tgaacacccc tgtaaccatt      4200
     tactttcgag aatatccacc tatacaaagt taatacgaat cactgcctgg attcgaagat      4260
     tttggaacaa cgtcaagagt aactcagaag atcgtaagcg tggaaatttg tgcaccgaag      4320
     aaattgaatg ggcagtaaac gtatggtgca agtttgtgca acaagaatcc tatcccgacg      4380
     atttgtctgc actaaaaact ggtaagcgtt ctccaaaagc tcgcctcaca aaatattgtc      4440
     tttttctaga taagtatgag atattgcggg tggatagcag aatcggccgg gcaacggaaa      4500
     tatcagcttg caccataaat ccaatcattt tagatggcag acataaattt actcaaatgc      4560
     tgattcgaaa acttcatctt gatgctcaac atgttggtac gcaagtggtg gttcacaatt      4620
     ttagaagtgc atattggatg ccaaaactta atcgatgcat caaaaagaca attagcgatt      4680
     gtgtctggtg caaacgtaaa aaggcaaaaa cagagactcc aaaaatggga tggcttccgc      4740
     aggaacgatt tctaactcat gaaaaaccat tcacagcaac aggcgtggat tactttggcc      4800
     cgttttacgt aaaagcgaac aatggaaccc gcgcaactaa aagttttcgc aaacgatacg      4860
     gagttatttt cacatgtcta actactcgag caattaatgt tgaaatagca cattcgttag      4920
     acactgattc ctgtatacaa gcagtacgaa gaatgatggc tcgacgaggc ccagtaaaaa      4980
     ttatctggtc cgataatggt acaaactttc gaggtgcagc aagggagcta caagaggctc      5040
     ttgaagaact cgacgaagtt tacatcaaaa catatttggc aagtaataaa ataacatgga      5100
     atttcattcc agctaacgcc ccaaattttg gtggatgttg ggagaggctt gtcggatgtt      5160
     ttaagaggac aattgaagca gttatttcaa caaatgcaca tccgactgat gaaaccctgt      5220
     aaactatatt tttggaagca gaatacttag taaatagtcg accgtacata ctggagtcag      5280
     atgatgccga tgacgaaatc ggattatgcc caaacgatat ttgtataccc caaagttatg      5340
     cccttcatag cccaggagaa ttctcaagcg gaggatggga aaaacgtgca tggagagtat      5400
     cccaattcct agtcaattca ttctggaagc gtttcatcaa ggaatatctt ccaaatctaa      5460
     tacatcgctc aaaatggatt caagacgtac acaacataca agtgggagat attgtcgtag      5520
     tgaagtgtac tgaaggtgtt ccctggagaa gatggagttg tacgtgtggt cgacctgaag      5580
     ataacgagga atacatacag acgtccagta aatcgtcttt gtaagatcgg agtcaatagc      5640
     aacgacagtg aggatcgtgc tgggaatagg aatccgcact aggggccgct tta             5693
//
ID   BEL-56_DTa-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-56_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-225
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (19-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, ~98% identical to another solo-LTR.
XX
SQ   Sequence 225 BP; 90 A; 32 C; 30 G; 73 T; 0 other;
     tgtcattgct aaattttata atttcaattt aagtttttta ttccttcttt attttatttg        60
     tatgaatacc tctaacaaaa gaataccaga tttcagtaaa atgtatttga tccaaaaaag       120
     aagttggtca ctcgaagaaa aaagcgaggc caagccggtc gcagaaaatt aagaaataaa       180
     agaaaagttt ataaacaatt aaaccgcctc gaatattatt taaca                       225
//
ID   BEL-57_AA-I repbase;    DNA;    INV; 5726 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_AA_;
KW   BEL-57_AA-LTR; BEL-57_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5726
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions 3348461 3354186.
XX
CC   Positions [4759-5328] - Integrase core
CC   'CTTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..5700
FT                 /product="BEL-57_AA-I_1p"
FT                 /translation="MPKKKVLQTTAANQQTPSVKKDKKQTNLEETMAQAEQ
FT                 LSVLVHRRGLAKGKLTRLFNYLFPDEEEAPQLSEAQVRHYVKKVEAVQREY
FT                 TEVHERILALVSEDNREDHDSHYVQFDDLQDVISVNLEEQLAKVSLNPATS
FT                 RATFANTQAQAPILVHQPLKIPIPTFDGRYESWPKFKVMFKDLVDNTPDPP
FT                 AVKLYHLDKALTGSASGIIDAKTISEGNYIHAWEILEERYENKRHSIDKHI
FT                 HGLLHLKKMSKGTYDELRNLLDECSKHVESLKFLEQEFLGVSELILVHVLA
FT                 GALDREVRRRWEHTVKHGELPTYNEMLEFLKEECFTMERCDGPGTKPASSQ
FT                 AKPSAAATKFSQKSFAAVTTASDPKCDFCGKSHLNFACPEFKALSVPQRLV
FT                 KVKECNACFNCLKRGHRGSSCPSEKTCSRCKRRHHSLLHAEEKPKPSVVED
FT                 PQSKPSVLQSPKNEEPPATPTEEATSASCCNERVPSHQVFLLTAVVDIIDK
FT                 NQKTHPCRVLLDSASQVNLISKQMVESLGLNTSPSNVVVAGVNDTKSHALS
FT                 SSLVHIRSRYSRFSANVKCLMADKVTSDLPSSTVSVREWDIPAGVHLADPK
FT                 FYQSGKVDLLLGNQLFLKLLMPGEVQLADNLPCLRETQLGWVVGGVCGDAM
FT                 YDSVVHSHSLTLEELNRTVQRFWEVEDVSSANVPTEADECELHFQATHRRD
FT                 DTGRYVVQLPLKENVSELSDSRTMALKRFYILERRFAQDPDLKQQYSEFLT
FT                 EYERLGHCEEVKESEDPEGVKWYLPHHAVLRPSNTTTKCRVVFDASAKVKG
FT                 LSLNDVMMIGSLNQCALDEIALCFRIPCYVLTTDVAKMYRQVLVDKNHRRL
FT                 QRIFFRLDPSSPLRVLELKTVTYGTASAPFLATRALLQLANEDGHKFPLAA
FT                 EIVKTCFYVDNALFGFDDIGEALEAQSQLIQLLEGGGFHLHKWASNCSELM
FT                 ASIPEAQREELVSIADMGVNDVIKTLGLLWNPSTDELVFVAKPSPVGDNPT
FT                 KRQVLSLVASMFDPLGLAAPVIVVGKMLMKNIWCEKIDWDEQLTEELKKCW
FT                 NYFLKCLSDVKKIKIPRQVVAPGATAFEIHGFGDASLEAYGACVYIRSIVP
FT                 GSPPVVKILTAKSKIVPKSVLTIPRKELLAALLLHRLVIKVIATLRMSFRQ
FT                 VVLWSDNQIVLAWLKKKPEQLDVFVRNRVCEITSNDNDFEWRYVNTADNPA
FT                 DIVSRGCSAEELTVSDLWWNGPTFLRAENYQMDNPAPLLDDEVPELKATVV
FT                 TSTMVELEMPHVFEKYESFRKLQRVVAYVLRFCGNCKKKKENREVSTFPTI
FT                 PEMQAALKVIVRVVQRHEFAEEIFKLKSGESPTKLKNLNPYFDDDVLRVGG
FT                 RLRHSNLSYTSKHPWILPNRNVVVDSLIRCVHRENLHIGPAALLATLRRQF
FT                 WILHGRSAVRKITRSCVRCFKVNPRTADQFMGDLPSSRCDRAPAFQRVGLD
FT                 FAGPFLIKQTGRKAAPVKGYVCIFICMVTKGIHLEAVENLTSDAFIGALQR
FT                 FVSRRGVPEVLFSDNGTNFVGAKKELHELFNLFKEQATKRKIFEFCQPREI
FT                 RWKMIPPGSPHMGGLWEAGVKSTKSVLKKTCNTASLTMMEFSTLLCQIEAL
FT                 LNSRPLYAHSEDALDPEPLTPGHFMVDRPLTAIPEPTYEEIPVNRLSRWQY
FT                 VQLLRGNFWNRWYREYLVELQVRSKWTKKTANIRPGMVVMIKEDNLPPQVW
FT                 KFGVVDKVFPGADGFTRVVDLRTRSGIQRRPIHKLAPLPILDNSSA"
XX
SQ   Sequence 5726 BP; 1530 A; 1238 C; 1537 G; 1421 T; 0 other;
     tgaattggtc cttcgagccg gatgttcgat ggatgttaag tgaagtggaa tttcggaaga        60
     attggtattg aaggccgatg aagtggaaaa aatgtggttc ggccgaatgt gaaaatgtga       120
     tccggccgaa tgcgaaaatt ggtgatcggc caccgaaaaa ccaaaaagtg aaaaaaggac       180
     gccatcttgg caagtgtgca ggagcgaaca cgtcgccatt gcaatcaagt gttggatgag       240
     cgtaaaagac gccatcttga aaagcgaaaa agtgaagtgg ttgtgaagtg aatttgggcc       300
     aggagaacac ctttccgccc caagcaccgt gattatagac ttggctgttt tccgtgcttg       360
     gttcgggcat aaggctcgaa atgttccggt gattctctgg ccatgccgaa gaagaaagtt       420
     ttgcaaacga cagcagctaa ccagcaaact cctagcgtga agaaggataa gaagcaaacc       480
     aacttggagg aaacgatggc gcaggcagag cagcttagcg ttctcgttca tcgtcgcggt       540
     ttggcaaaag gtaagctcac aagattattc aattacttat tccctgatga agaagaagca       600
     ccccagttaa gtgaggcaca ggttcgccac tatgttaaga aagtggaggc agtgcaaagg       660
     gaatacaccg aggtccatga gcgaatcctc gcgttagtct ctgaagataa cagagaggac       720
     catgattcgc actatgtgca gtttgatgat ctccaggatg taatatccgt gaacctcgaa       780
     gagcagttgg ctaaagtttc attgaaccct gccacgtcaa gagctacttt tgccaatacc       840
     caagctcaag cccccattct tgttcatcag cctctcaaga tcccaatccc cacttttgac       900
     ggccgctatg aaagctggcc taagtttaaa gtaatgttca aggaccttgt ggataatact       960
     cccgatcccc cagctgtaaa gctataccat cttgataaag ccttaacggg gagcgcatct      1020
     ggtataatcg atgccaagac cataagtgag ggaaactaca ttcatgcttg ggaaattctt      1080
     gaggaaaggt atgagaacaa acgccattcc atcgataagc acattcatgg tttgttgcat      1140
     ctcaaaaaga tgtccaaggg aacctacgac gagttgagga atttgttgga tgaatgctcg      1200
     aagcacgtcg aaagtttgaa gttcttggaa caggagttcc taggagtttc ggagctgatt      1260
     ttggtgcatg tgctggcagg ggctttggat agagaggttc gtcgacgatg ggaacataca      1320
     gttaagcacg gtgagctgcc cacgtacaat gaaatgctgg agttcttgaa ggaggagtgc      1380
     ttcactatgg agaggtgtga tggtcctggg acgaagcctg catcaagtca agcaaaacct      1440
     tccgctgctg ccaccaagtt tagccagaag tcctttgcag cagtcacgac agcttcggat      1500
     ccaaaatgtg atttttgtgg aaagagtcac ctcaactttg cgtgtcctga gttcaaggcg      1560
     ctttccgttc cgcagcgatt ggtcaaggtc aaggagtgca atgcgtgctt caattgttta      1620
     aagcgtggac atcgtggtag cagttgcccg tctgaaaaga cttgtagccg atgcaagcgt      1680
     cgtcaccata gtttgctgca cgcagaggaa aaaccgaagc caagtgtcgt tgaagatccg      1740
     caatcgaagc cgtctgtcct ccaatcgccg aagaatgaag aaccaccagc aactccgaca      1800
     gaagaagcga cgtccgctag ctgctgtaat gaaagggtgc catctcacca agtgtttctg      1860
     ctcacagcgg tggtggatat tatcgacaaa aaccaaaaaa cccacccctg tcgagtttta      1920
     ttagacagcg cctcgcaagt caatcttatc tctaagcaaa tggttgagtc ccttggattg      1980
     aacacgagcc cgtctaacgt cgtcgtggct ggagttaatg acaccaagag ccacgcatta      2040
     agcagcagtt tggttcacat ccggtcaagg tattcaagat tcagcgccaa cgtgaagtgc      2100
     ttgatggctg ataaagtcac gtcggatttg ccttcttcaa cggttagtgt acgagaatgg      2160
     gatattccag ctggtgtcca tcttgctgac ccgaagttct accaatctgg aaaggtggat      2220
     ttgttattgg gcaaccagtt attcttgaag ctactgatgc caggagaggt gcaattagct      2280
     gataaccttc cgtgtctgcg cgagacccaa ctgggctggg tcgtaggtgg tgtttgcggc      2340
     gacgcaatgt atgattccgt ggttcattcg cattcactca cactggaaga gttgaatcgc      2400
     accgtacaaa ggttttggga agttgaggat gtttcaagcg ccaatgtgcc cacggaggct      2460
     gatgaatgcg agctgcattt ccaagcgacc catcgccgtg atgacacggg acgatatgtt      2520
     gttcagctac ccttgaagga gaacgtttcc gaattgagtg attccaggac gatggccctc      2580
     aagcggttct atatactgga aagaaggttc gctcaagatc cagatttgaa acaacagtat      2640
     tcggagtttt tgactgagta cgagcgtctt gggcactgcg aagaagttaa ggaaagtgaa      2700
     gatcctgaag gtgttaagtg gtacctacca caccacgccg tcttgcgtcc gtcgaatact      2760
     accacaaaat gccgagtggt atttgatgca tcggcgaagg tgaagggact atcattaaac      2820
     gatgtgatga tgatcggatc gttaaatcag tgtgctctgg acgagattgc cctttgtttc      2880
     agaattcctt gctatgtcct gacgacggac gtggcaaaaa tgtaccgtca ggtactagtt      2940
     gacaagaacc atcgccgcct gcaaagaata ttcttccggt tggatccgtc gagtccactc      3000
     agagtattag aattgaagac tgtgacatac ggtacggctt cggcgccttt cttggcaacg      3060
     agggcgttat tgcagttggc aaatgaagat gggcataagt ttccactggc agcagaaatc      3120
     gtcaaaactt gcttctatgt ggataatgca ctttttggat tcgatgatat tggtgaagcg      3180
     cttgaagccc agtcgcaact gattcaactc ttggaaggag ggggattcca tttgcacaaa      3240
     tgggcctcaa actgttcgga gctgatggct tccataccgg aggcacaacg tgaggagttg      3300
     gtcagcatag cagatatggg agtgaacgac gtgatcaaaa cccttggtct tctgtggaat      3360
     ccgtctaccg atgaattagt cttcgttgcg aagccgtctc ctgtcggcga taacccgacg      3420
     aagcgtcaag tgctgtcgtt ggtggcaagt atgttcgatc cgctggggtt ggctgcgcca      3480
     gtgattgtcg tcgggaagat gctgatgaag aatatatggt gtgagaaaat tgactgggat      3540
     gaacaattaa ctgaagaatt gaaaaagtgt tggaactact tcctaaagtg cttaagtgat      3600
     gtgaagaaga tcaagattcc tcgtcaagtg gtggcacctg gagctaccgc ttttgaaata      3660
     catgggttcg gagatgcttc tctggaagcg tatggagcct gtgtatacat tagatccatc      3720
     gttccgggaa gcccaccagt ggtgaagatt ttgactgcaa agtcgaagat agtgccgaaa      3780
     tcagtgctaa caattccgcg taaggagctt ctggcagcgt tattgctcca tcgactagtg      3840
     ataaaagtga tagccacatt aaggatgtca ttccggcaag tggttctatg gtcggacaac      3900
     caaattgtgc ttgcgtggct aaagaagaaa ccggaacagt tggacgtttt tgtaagaaat      3960
     agagtgtgtg agattacctc taatgacaat gactttgagt ggagatatgt aaacaccgca      4020
     gacaatcctg ccgatatagt gtcccgcgga tgttccgctg aagaattgac tgttagtgat      4080
     ctttggtgga acggtcctac gtttttacga gccgaaaact accaaatgga caatccggct      4140
     ccgttgctgg atgacgaagt tcctgagctc aaggctaccg ttgtcacaag cacgatggtg      4200
     gagcttgaaa tgccgcatgt cttcgagaag tacgagagtt ttcggaagct gcagcgagta      4260
     gtggcctatg tgctgcgctt ctgcgggaac tgcaagaaga agaaggagaa tcgtgaagta      4320
     tcaactttcc ctactatacc cgagatgcaa gcagctttga aggtaatagt acgtgtcgtg      4380
     cagcgtcacg aatttgctga agaaatcttc aagttgaagt caggtgagtc ccctacgaag      4440
     cttaaaaatt tgaatccata tttcgatgac gacgtcctgc gtgtgggtgg ccgcctacgc      4500
     cactcaaatc tatcgtacac gagcaaacat ccatggattc tccccaaccg aaatgtggtg      4560
     gtggatagtc ttatcaggtg tgtccaccgc gaaaatctgc acatcggccc agcagcattg      4620
     ctagccacct tgcgaagaca attttggatc ctgcacggtc gctcagcggt gcgcaagatt      4680
     acacgaagtt gtgttcgctg cttcaaggta aatcccagga cagctgatca gttcatgggg      4740
     gatcttccat caagtcgctg tgatcgagct ccagcattcc aaagggtagg attggatttc      4800
     gccggtcctt tcctgatcaa gcaaactggt aggaaggcag cgccggtgaa gggatacgtt      4860
     tgtattttca tctgcatggt gacgaagggg atccaccttg aggcggttga aaatttgacg      4920
     tcggacgctt tcatcggtgc cttgcaaaga ttcgtgtccc gtcgtggcgt cccggaagtg      4980
     ttgttttctg acaacgggac caattttgtg ggcgccaaaa aggagttgca cgagctgttc      5040
     aacctgttta aggagcaagc aacaaaaaga aaaatttttg agttctgcca accacgagag      5100
     attcgttgga aaatgattcc gccaggctcc ccccacatgg gtgggttatg ggaggccggt      5160
     gtaaaaagca caaaatctgt actgaagaaa acctgcaata ccgcttcatt gacaatgatg      5220
     gaattttcga cgcttttgtg tcaaattgag gccctcctga attcgcggcc gctttatgct      5280
     cactcggaag atgcgttgga tccagaaccg ctaactccgg ggcattttat ggtggatcga      5340
     ccgttgacag ccataccgga accaacatat gaggagatac cagtcaacag gttgtcccgg      5400
     tggcaatatg tccagcttct tcgaggtaat ttttggaatc gttggtatcg agagtatctg      5460
     gtggagcttc aagtacgtag taagtggacc aagaagactg ccaacatacg ccctggaatg      5520
     gtggtgatga taaaggagga taacttacca ccgcaagttt ggaagtttgg agtcgtcgat      5580
     aaggttttcc ccggggcaga tggattcacc cgcgtcgtcg atcttcggac tcgatctggg      5640
     atacaaaggc ggccaataca caagctggcc ccgcttccaa tcctggataa ttcttctgct      5700
     tgattgagtt actgccgggg ggagga                                           5726
//
ID   BEL-57_AA-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_AA_;
KW   BEL-57_AA-I; BEL-57_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-337
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions 3348124 3348460.
XX
SQ   Sequence 337 BP; 85 A; 74 C; 73 G; 105 T; 0 other;
     tgttcgcgct gcatactgac agctcgaaat ttttcagtgt acccgattgc tgcgatcgat        60
     ttggcaacgc ttcaagtcga gctttaggag agaggagtta gcgcgcccaa tgcgcgcggc       120
     agagcttttt tcataagttt atcggcgtcc gtcgcgagcg gttacaattt tcgcttttcc       180
     tttttctata atattaattc attaaaaacc atgtgaataa gtgcaatata tcaataccaa       240
     atttaaggaa gtgatttttc aatgtgtgac tgaattcctc cgaaattccc gtgaagtccc       300
     cgtcgtggca attgcgttac agtccgctaa tcgtaca                                337
//
ID   BEL-57_CQ-I repbase;    DNA;    INV; 3037 BP.
XX
AC   AAWU01004587;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_CQ_;
KW   BEL-57_CQ-LTR; BEL-57_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3037
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 267-267 (2011).
XX
DR   GenBank; AAWU01004587; Positions   81883   84919.
XX
CC   'TTCTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           541..2553
FT                 /product="BEL-57_CQ-I_1p"
FT                 /translation="MAPGLRALFHQERFYLNTLTNAKQFVEAYKEAQHSGQ
FT                 LAGWKQRIDGLDDKFHANRLAIELSLDDDTDKATKKTDDAAAQATEEADKD
FT                 ASEESNRLIRKKFELDYVLVYSFLVNEIQKQTIVPQANVDPVSPGRSRVKL
FT                 PDVTLPMFDGSILEWITFRDSFKSLIHSNVELSPFDKFMYLIGSMTPKARE
FT                 RIDNIDVSAANYPIAWQALEELFENKKLIFKAYMDALFAIEPMRKECYECL
FT                 AQLVDGFERNLNMIKKLDISTDGWGAVLSHMVCCRLDHSTLKQWESHYRST
FT                 EVPEYNDLMAFLRGQLSVLQSLPSSKSESHKHEHRSLIPKTTYAVTSPATS
FT                 LCPFCSQPSHSPFKCDYFQGLSVSQRLDLVRTRNLCLNCLSPEHMVRKCPS
FT                 GTCRVEGCHRMHHTMLHLSSNERSSTSTSPANSRSNSPHQSYPQPYSSSPP
FT                 PPESQHPLATSLVSTNVVGARKIPATVLLQTAIVKVLNSRSQHQSARALLD
FT                 PASQLNLISEDLVQKLKLRRYPCHQPIGGVGNSTVISSHAVHIALGSYTNT
FT                 NFRAVQTFHILEKITQDLPSRIIDTSSWKLPTNVNLADPRLAEPRSVDLLI
FT                 GMELYFDLLLDGFIKLGSEKPILQNTVFGWVASGKIRSGRPERAPKLAHVS
FT                 IISKIHNSNHQGGSLPLTCDTT"
XX
SQ   Sequence 3037 BP; 753 A; 792 C; 749 G; 743 T; 0 other;
     tttggtcctt cgattgccgg atgtgcgcga tttatcacgg acaatcgcgg acatttctcg        60
     ctgaacttgt cgctggcgtc aaaagtggac ttttcggatt gtgtggctct cgagaaccac       120
     gccgcgtgtg tagtgggtga aaagtgaaaa aataatattg cgctgactgt actgtcgcgg       180
     caaaccatgc gctgaagaaa cttgtgccct atgctcgatg aacagtgata agtgctacaa       240
     aaattgctgc tgattgcctg ccgaatttct tcgatctacc gcatcaagca ccgcgaggtc       300
     accgcgtggc acgacgtggc ttgggctgta ttgtgcgagg aggataaagg gcctggacta       360
     gatcaaaggt catcgttgca cacgtgagta cgacatgtgt gttgtggtgg tttaactgga       420
     ttggtctttg cgtgcgatcg tcaatactgc aaatctcggg ctggttggta gtgtgtgcag       480
     cgtggttgga atttccgcat ttttttgggc ttgattgagc actgctagtc gctttgggac       540
     atggctcctg gattacgtgc gttgttccac caagagcggt tttatctgaa cacacttacc       600
     aacgccaagc agtttgtgga ggcctacaaa gaggctcagc atagtggaca actagcggga       660
     tggaagcagc gaatcgacgg tcttgatgac aaattccatg ctaaccgtct tgccatcgaa       720
     ctatcgctgg acgatgatac ggacaaggcg acgaagaaga ccgatgatgc tgctgcgcaa       780
     gctacagagg aagccgacaa ggatgcttct gaagaaagca atcgacttat acgcaagaaa       840
     ttcgaactgg actatgttct tgtgtatagc tttctggtca acgagatcca gaaacaaacc       900
     atagtccccc aagcgaacgt cgaccctgtc tcacctgggc gctcgcgagt caagcttcct       960
     gacgtcacac ttcccatgtt tgatggttcg atcttggaat ggatcacatt tcgtgattca      1020
     ttcaaatcac tgattcactc taacgtcgag ctgtcgcctt tcgacaaatt catgtatttg      1080
     ataggatcga tgacgccgaa ggcgagggag aggattgaca acatcgatgt tagtgctgct      1140
     aactatccta tcgcctggca ggcactggaa gagttatttg aaaacaagaa gcttattttt      1200
     aaggcgtaca tggatgctct ctttgcgatc gagccgatgc gcaaggaatg ttacgagtgc      1260
     ctggcgcagc tagtcgacgg ctttgagcgt aacctgaaca tgataaagaa gttggacatc      1320
     tcaacggacg gttggggtgc ggttctgagt cacatggtat gctgtcgact tgatcattct      1380
     acattgaagc agtgggagtc acactatcgt tccactgaag ttcctgaata caatgacctg      1440
     atggcgttcc tacgtggtca actttccgtc ctgcagtcat tgccatcgtc gaaatcggag      1500
     tctcacaaac acgaacaccg atcgctgatc ccaaagacca cctacgctgt cactagtcca      1560
     gcgaccagct tgtgtccgtt ttgttcgcag ccatcccact cgcctttcaa atgtgactac      1620
     tttcaaggct tgtcagtttc gcaacgcctt gacttggtga ggacgaggaa tctctgccta      1680
     aattgcttat ctccagaaca catggtgcgt aaatgtccct ccggtacatg cagggtcgaa      1740
     ggatgtcacc gcatgcatca cactatgctc cacctatctt caaacgaacg atcgtccact      1800
     tcaaccagcc cagcaaattc tcgctcgaat tcgccccacc agtcctaccc acaaccttac      1860
     tcgtcatcac cgccaccgcc tgagtcccag catccactag ccactagcct cgtgtccacc      1920
     aacgttgttg gagctcggaa gattcctgcc actgtgctgc tgcagacggc tatcgtcaag      1980
     gtgctaaatt ctcgatccca acatcagtcg gctcgagccc tcctagatcc agcatcgcaa      2040
     ttaaacctaa tttctgaaga tctagtccag aaattaaagc tgcgccgcta cccgtgccac      2100
     cagccgattg gtggagtcgg taactcaacc gtcatttcgt ctcacgctgt tcacattgca      2160
     ctgggatctt acacgaacac gaacttcagg gctgtacaaa ccttccacat tctggagaag      2220
     attacccaag atcttccatc tagaattatc gacacctctt cgtggaaact accaactaac      2280
     gtcaacttag cagacccaag gcttgctgaa cccagatcag tagatctact tatcggcatg      2340
     gaactctact ttgacctact gcttgatgga ttcatcaaac tgggatctga gaagccgatc      2400
     cttcagaaca ccgtttttgg ttgggttgca tcagggaaaa tccgttctgg ccgaccggaa      2460
     agggctccga agcttgccca tgtgtctatc atcagcaaaa tacacaactc gaatcatcaa      2520
     ggtggatcgc tgccgctgac atgcgacacc acgtagctat gcgtcgtggc gagtccagca      2580
     gttacttcga cccaatcgga cgaggaggcg ctgcccgata atcgtcgtca ttcgtaatta      2640
     agctcaaagg actgagcctt ccatcgcaac gctacggcat tgcgcaccgg gaggcctacg      2700
     ggcctccgac ccctgtaagt tgttttaata ttgaatttgc aaaaagctca tgaatttttt      2760
     gtcccccggc atgtttttgg ctcatcgatg gcgactccaa cccacaacca tgagcgcgcc      2820
     caacgcggac gatcaccgag catcaaccga gaacgcacag aggatcgccc gtgacgtcac      2880
     caggagcagc aatttgtaag gagaggagag cggtcgatag tcgaagcaga gctgctgtgg      2940
     acaacatcaa caaagttgac cttggccttc tgcgacgagg cagaagggtg cgatcgcgtg      3000
     tattggttga aagctgaccc tttcaacggg gccggca                               3037
//
ID   BEL-57_CQ-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   AAWU01004587;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_CQ_;
KW   BEL-57_CQ-I; BEL-57_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-300
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 268-268 (2011).
XX
DR   GenBank; AAWU01004587; Positions   81583   81882.
XX
SQ   Sequence 300 BP; 82 A; 74 C; 64 G; 80 T; 0 other;
     tgttgggaca cgctagtgcc caaacacgaa gcccgaatag ataagagaga atttgaattc        60
     ggttacatta gtattagcac actatcacat tatcacaacg ctcggccagc ggcccgatca       120
     cgagagaatt tggctaccta ctttgcgaca aggtcaagtt cgtggtgatc gccactcaca       180
     agttgagttg aaatatagag ttcaaaccag cctcacgcgt ttttttgatt ctcgactctt       240
     ctatcgaaga agtgttcgtt agccaccgat attccgcgtt ttgacgaccc cttcgtaaca       300
//
ID   BEL-57_DTa-I repbase;    DNA;    INV; 5406 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5406
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5704-5704 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(74..4786,4441..5403)
FT                 /product="BEL-57_DTa-I_1p"
FT                 /translation="MEQLKAFMKSRSRLKANITRCLSWAEQAESATQTEIT
FT                 TRIQLLHDVWKEFNEFGDAIAVHEEVEGYVDPEIDNAIYEEKYLRAIAILK
FT                 DRSDALQPSTSTGITNGSNGLHSNNDAIVNLLQQNQQLFERLAANQASSST
FT                 PVQVGGDVTLANLSSVFAANSNQSELPKIQIKRFSGNYTEWPSFQDIYENT
FT                 IHNKQHLSNTQKFHHLKTLLVDEAANLVRHLAITETAYNTAWERLKERYNR
FT                 PRHIVNSFLEQFMSLPTTTKVDASILRKVSDGANEIIRGLDAVNQMGRDCW
FT                 IIYLALEKLDADTRRRWIERSMDTDSPTLEEFFKFLDSRCEELELSKRELA
FT                 TGGKTTTHAEKPKRVTQSMVAVEGSGCTKCNSTEHTLYSCQQFLDMSGMQR
FT                 RSFVKEKSLCYNCLRPGHGVSKCKSTYKCRQCKGNHHSLLHVQANPQAIGN
FT                 LAQIAGEDERNTSASNNTSVTLSHFAQGEGTQSVVCAQGTAKSAQESEVKR
FT                 SILPTAMVYVQNAKGDHVTCRLLLDTGSELSYVSERCIQALGLTRSASRIL
FT                 VTGISSVKADTTRGCSTLHIKSRISEDQLVVYAHVLGRITSSLERQNIDAS
FT                 ALKVFKDLQLADTEFNTNSPVDILLGSEHVWSVFTGRKMYDNKGNLIAISS
FT                 VFGWVITSLITSSPSNACALTTTVDIGATLQKFWELENVQSSAKLEPEDDQ
FT                 VEKHFLATHSRDENGKYIVELPFNTENPEFGGTLQGALKRFKSVERRLQQN
FT                 EQLRTQYVHFMREYTNLGHMREVPPEENATGNQFYLPHHPVLGRKLRVVFD
FT                 GSFRDANGKALNDTLFTGPSIQRDLFAVCLRFRMYKFAFSADIVKMFRQIW
FT                 VNEKHRNFQKIVWREDPSDPIKHFQLCTVTYGTSCAPFLAVRVLEQLAIDH
FT                 QEEYPNASKILLEDFYVDDVLTGSNSEDELLRNRNELVQLMSRANLELGKW
FT                 VSNTPCIQTNDGDTQSAQTSPVKVLGLYWHPGKDILTYNVGLAANPDCTKR
FT                 QVLSDVSRIFDPLGLLAPIVIQFKILFQKLWLLNLDWDDPLPTKLADNWLK
FT                 WRADLDTLQKFRLPRFVPNDPDNIELHGFSDASTKAYAAVVYSRVTNDDGS
FT                 ISVSIVAAKTRVAPLKQQSLPRLELCAALLLSQLIRSITSGLRHKNITVFG
FT                 WSDSSIVLSWLSYAPAQLKTFVGNRTSEILDTIPRSAWRHVDSKTNPADCA
FT                 SRGLMAADLIDFHLWWNGPQWLRDKDQYLVKLNDSRFGLSLTDKRIQGEVK
FT                 SNCLATLTEATQIHXLDELIXRVSSWIKLVHIVGYVMRFIQRTRSPSREKV
FT                 SRALSFDEIKAARILCIKHAQGCFQDDYQLLLGKKPLKNRSQLVKLAPIID
FT                 ENDLLRVGGRLHHSQLSRDAKHPVLLPKTHRISKLILEHEHRVNLHPGVSS
FT                 LFVIVRQKFWIFGARNLIRKITHDCLACFRQRSHTSQQQMANLPSVRITQA
FT                 LPFIHTGCDYAGPILLKDAKVRKPRISKGYICLFVCMVTSAIHLELATDLT
FT                 TKLSWLPCGASYPYVASAVRSTVTMAQTLLELSDPSTRCKNCFLHKHTRTP
FT                 FXAHFTQRTHYSSASIYTHWLRLCRSNPSEGCKGSEATYQQGLHMPICVHG
FT                 HLGHPPGTCNRPDHETFLAALRRFISLRGKCSKIYSDNGTNFIGAKRSLDE
FT                 MQELLSSQTHKDTVSSTLADDGIQWVLIPPRAPHWGGKWESAVRCVKLHLR
FT                 RITGNSTLTFEQMRTLLAQISAVINSRPLCHTPDTETNYLSPAHFLIGRPL
FT                 TTVPDPDLSHIPVGRLGYWQSIQSMLQGFWKKWHQEYLTTLQQRPKWTTST
FT                 PNISTGNVVLVKESNSPPASWHIARVMETYPGKDDLVRAVKLKTQAGEMTR
FT                 PITKVAVLPHSETVFQGGP"
XX
SQ   Sequence 5406 BP; 1522 A; 1354 C; 1274 G; 1251 T; 5 other;
     tattgttggt ccttcgttca cggattcttg gacagttagt ggagtgcttt gattctcagg        60
     ataattgttt gctatggaac aattaaaagc atttatgaag agccgttcca ggctcaaggc       120
     taacatcaca cgttgtctct catgggcaga gcaagcggaa tctgcaacac agacagagat       180
     caccacgcgc atacaacttc tccacgatgt ttggaaggag ttcaacgagt tcggcgatgc       240
     cattgctgtc cacgaggaag tggaaggtta cgtcgatccg gagatcgata atgcgattta       300
     cgaagaaaag tacctaaggg cgatcgcaat tctcaaggac agaagtgatg ctctacaacc       360
     gagtacatct acaggcatta cgaatggcag caacggtctg cattccaaca acgacgcaat       420
     tgtcaatttg ctgcaacaaa accaacaact atttgagcga ctggctgcaa atcaggctag       480
     ctcgagcacg ccggttcaag ttggtggtga cgtcactttg gcgaatttaa gttcggtatt       540
     cgcggcgaat tctaatcaga gcgaattgcc aaaaattcaa atcaagcggt tctctggcaa       600
     ctacacagag tggccctcct ttcaagacat ctatgaaaac acaattcata acaagcagca       660
     tttgtccaac acacagaagt tccatcactt gaaaacactt cttgttgatg aggctgccaa       720
     cttggtacgg cacttggcca ttacggagac tgcttacaac acagcttggg aacgtcttaa       780
     ggagaggtac aatcgtccac ggcacattgt aaactcattt ttggagcagt ttatgagcct       840
     accaacaact acaaaggtag atgcatcaat tctacggaag gtgtcagacg gagcaaacga       900
     aattattcgc ggattggatg cggtcaacca gatgggccgc gattgctgga tcatctatct       960
     ggcgctggag aaactagacg ctgacacgcg gcgcaggtgg attgagcgca gcatggacac      1020
     ggattcacca actctcgagg aattcttcaa gtttctcgat tctcgttgcg aggaactgga      1080
     gctgagtaaa agggagcttg ctactggtgg caagacaaca acacatgcag aaaaaccaaa      1140
     aagggtcaca caatcgatgg ttgcggtcga aggcagtggc tgcaccaaat gtaattctac      1200
     agaacacact ctgtacagct gtcagcagtt cttggatatg tccgggatgc agaggcgatc      1260
     cttcgtgaag gagaaatcac tgtgctacaa ctgcttgcga cctggtcatg gggtcagcaa      1320
     gtgcaagtcg acatacaaat gtaggcaatg caagggaaat catcactccc ttcttcatgt      1380
     ccaagcgaat ccacaggcta ttgggaatct tgcccagata gcaggggagg acgagcgaaa      1440
     cacaagcgcg tccaacaaca catcggtgac tctcagtcat ttcgcccaag gagagggcac      1500
     tcaatcggtt gtatgtgcac agggcactgc aaaatctgca caggaatcgg aagttaagcg      1560
     aagcatatta ccaactgcca tggtttatgt tcaaaacgca aagggtgacc acgtaacatg      1620
     ccgtctctta ttggacacgg gctccgagct ttcctacgta tccgagcgtt gcatccaagc      1680
     actcggattg acacggtcgg catcacgcat cttggttacc ggaatctctt cggtgaaagc      1740
     agacacgacc aggggatgca gcaccttgca catcaagtct cgtatctccg aggatcagtt      1800
     ggttgtctac gcccacgtgc taggcaggat cacttcttcg ctggaaaggc aaaacatcga      1860
     tgcatcggcg ctcaaggttt tcaaggatct gcagttggcg gatactgaat tcaacacaaa      1920
     ctcacctgtt gacattctat tgggcagcga acacgtatgg tcagtgttta caggacgaaa      1980
     gatgtacgac aacaagggta atcttatcgc catttcttcg gtgttcggat gggtaataac      2040
     ttcactcatc acatcgagtc caagcaacgc ttgtgcgctg actacaacag tggacatagg      2100
     cgccacgctt cagaagtttt gggaactaga aaacgttcaa agcagcgcaa aattggaacc      2160
     ggaggatgat caagtggaga agcactttct cgccactcac agtcgcgatg aaaacgggaa      2220
     gtatatcgtg gaacttccat tcaacactga aaaccccgaa ttcggaggaa ctctacaagg      2280
     agcgctcaaa cgctttaaat cggttgagcg gcggctgcaa cagaacgagc agctgcgtac      2340
     acagtacgta cactttatga gggagtacac aaatctgggg cacatgcgag aggtgccacc      2400
     tgaggaaaac gctactggaa atcagttcta tctaccmcac cacccagtgc tgggtcggaa      2460
     gctacgagta gttttcgatg gatcatttcg cgacgccaat ggtaaggctt taaatgacac      2520
     cctgtttaca gggcccagta tccagcgcga tctattcgct gtgtgccttc gttttcgaat      2580
     gtacaaattt gcattctcag cggacatcgt aaaaatgttc cgccagatat gggtcaacga      2640
     aaagcacaga aacttccaga aaatcgtttg gagagaagat ccatccgatc ccatcaagca      2700
     tttccaattg tgcacggtaa cctacggaac ttcgtgcgcg ccattcctgg cggtgcgagt      2760
     gctggaacaa cttgctatcg atcatcaaga ggaataccca aatgcgtcga aaatcctgct      2820
     ggaggatttt tatgtcgatg atgttcttac tgggtcaaac agtgaggatg agctacttcg      2880
     aaaccgaaac gagctggttc agctgatgtc tcgcgccaac cttgaactcg gaaaatgggt      2940
     atcgaataca ccatgcatac agacgaacga tggcgacaca caatctgcac aaacgtcacc      3000
     agtaaaggtt ctcggactgt actggcatcc tggaaaagac attctaacgt acaatgtcgg      3060
     tctagctgca aatcctgatt gcacaaagag acaagtcttg tccgacgtct cgaggatatt      3120
     tgatcctctc ggactcttgg cacccattgt cattcaattc aaaatccttt tccaaaagct      3180
     ctggctcttg aatttggact gggatgaccc actcccaact aaactggcgg acaactggct      3240
     gaagtggaga gcagatctgg acactcttca aaaattccga ctaccacgat ttgttcccaa      3300
     cgacccggac aacatcgaac tccacggatt ttcggatgct tcaaccaagg cgtatgctgc      3360
     tgtggtgtac agcagagtta caaatgacga tggatccatc tcggtgtcca ttgtggctgc      3420
     gaaaacaagg gtggctccac tgaaacaaca atccttgcca cgtctggaac tttgcgcagc      3480
     acttctcctc agccaactga ttcgctcgat cacatctgga ttacgccaca agaacataac      3540
     tgtttttggc tggtccgact cttcaatagt gctctcctgg ctatcgtatg cgccagccca      3600
     actcaagaca tttgttggaa acagaacctc ggaaatcctt gacaccattc caaggagtgc      3660
     ttggcggcac gtagattcca aaacaaaccc agctgactgt gcgtccaggg gactgatggc      3720
     tgctgatctc atcgacttcc atttgtggtg gaatgggcct caatggctac gggacaagga      3780
     tcagtacctg gtaaagttaa acgattcacg gttcggttta tctcttacag acaaacgcat      3840
     tcaaggagaa gtcaaatcca actgtttggc tacwttgaca gaagcaaccc agattcatmt      3900
     acttgatgaa ctaatcgamc gagtctcttc ttggatcaag ctcgtacaca ttgtcggcta      3960
     cgtgatgcgg tttattcaac gtactcgaag tccatctcgc gaaaaggtat ccagagcgct      4020
     ctcatttgac gagatcaagg cggcaaggat tctttgcata aagcacgcac aagggtgttt      4080
     ccaagacgat taccaattgc tcctcggtaa aaaacccctc aagaaccgat cacagctggt      4140
     caaactggca cccataatcg acgaaaacga tttgctaagg gtaggcggac gactgcacca      4200
     ctcgcagttg tcaagggatg caaaacaccc agttttgcta ccgaaaacac atcgcatctc      4260
     aaagctaata ctggaacacg agcaccgagt gaacctccac cctggagttt cctcactttt      4320
     tgttattgtt cggcaaaaat tctggatatt tggagcacgg aatctaattc ggaagataac      4380
     acacgactgt ttagcttgct ttcgtcaacg ctcccacaca tctcagcaac aaatggctaa      4440
     tttacccagc gtacgcatta ctcaagcgct tccatttata cacactggtt gcgactatgc      4500
     aggtccaatc cttctgaagg atgcaaaggt tcggaagcca cgtatcagca agggttacat      4560
     atgcctattt gtgtgcatgg tcacctcggc catccacctg gaacttgcaa cagacctgac      4620
     cacgaaactt tcttggctgc cttgcggcgc ttcatatcct tacgtggcaa gtgcagtaag      4680
     atctacagtg acaatggcac aaactttatt ggagctaagc gatccctcga cgagatgcaa      4740
     gaattgcttt cttcacaaac acacaaggac accgtttcwa gcacactagc ggatgatggt      4800
     atccaatggg tacttattcc cccgagagcc cctcactggg gagggaaatg ggagtcggca      4860
     gttcgttgtg tcaagctaca tctgcgcaga atcaccggaa actcaacgct cacctttgaa      4920
     cagatgcgca cgcttcttgc tcaaataagc gcagtgataa attcacgccc cttgtgccac      4980
     acaccggata cggaaaccaa ctacctatca cccgctcact tcttaatcgg gcgaccttta      5040
     accacagtgc cagatcccga tttgagccac atcccagtgg gccgattagg atattggcaa      5100
     agcatccagt ctatgcttca aggattctgg aaaaaatggc atcaggagta tctgactact      5160
     ctgcagcaac gtccaaaatg gactacctca acacccaaca tctccaccgg taacgttgtg      5220
     ctcgtaaaag agtccaattc accaccggca tcctggcaca tcgcacgggt tatggaaacc      5280
     tatccaggaa aggacgacct cgttcgagca gtcaaactga agacccaggc aggagagatg      5340
     accagaccga tcacgaaagt tgctgtattg ccccattcag aaacggtgtt tcagggcggg      5400
     ccggga                                                                 5406
//
ID   BEL-57_DTa-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-57_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-259
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5630-5630 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
SQ   Sequence 259 BP; 83 A; 60 C; 37 G; 78 T; 1 other;
     tgttcgtgaa cgcttgcagc ttttaatcat ctctaatata taggcgcata atgccatctc        60
     tattctattc tatatacttt aacctatgta caagaaaaca tgtatacata caaaaaaatc       120
     tctttagttt ctggcaacgc cgctaagacg gcgtcgcttt gcgaaattca mttcagtatc       180
     gaataggctt cgcaactggc aagaataaaa attaatacag tccacacaca cgcaactcaa       240
     ctcgtcttat ttctgacca                                                    259
//
ID   BEL-58_AA-I repbase;    DNA;    INV; 5783 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_AA_;
KW   BEL-58_AA-LTR; BEL-58_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5783
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions 2157483 2151701.
XX
CC   Positions [4535-4801] - Integrase core
CC   'TATGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           251..4801
FT                 /product="BEL-58_AA-I_1p"
FT                 /translation="MSTERRIKGLKTRLKSLLTSFNLIKSFVEEYQEDRDA
FT                 HQVSVRLEHLVALWKDVNTTQVELETLDEESLDQYLKVRTDFESSFFHVKG
FT                 FLLSVNKSAVPDSPSASRTTAQVPPTSSVRLPDVKLPVFSGHLDGWLNFHD
FT                 LFVSLVHSSHELSSIQKFYYLRSSLSGDALKLIQTIAISANNYQVARNLLV
FT                 DHYQNPTILKQSYVDSLFEFPSLKRESASELHSLVEKFEANVRVLKQLGEK
FT                 TEFWGILLIKMLSSRLDPTTRRDWEEYATSKDNVSFNDLTTFIQRRVNVLQ
FT                 TINKSTEVLSQGAPKKSVSRSVASHGASQPNYRKCLVCSDHHPLYQCVVFS
FT                 KMTLDDKEKDVRRHQLCRNCLRKGYQARECPSSSTCRKCRSRHHTQLCPGE
FT                 THPASANSRTVESAPPKPTSAPIVEDPPRNSASAISEPVSCASSGQKRKSV
FT                 LLATAVVTLIDDNGTEHFARALLDSGSECCFMVESLAQQIKAKRTKIQVPI
FT                 TGIGQSSTYARHKLQSTIRSRVSGYSTAVEFLVLPKVTVNLPSTSIDVSSW
FT                 EIPDGIQLADPSFYDTRPVQLVLGAEIFFDLFKVSGRIQLGESLPNLVNSV
FT                 LGWVVSGVTSNCQSRTSVTANVATTADLHRLMEKFWSIEEGNDKNHYSVEE
FT                 AACEAHFRRTVSRSPEGRYIVRLPLKQDALMNLGDNRRSALRRFHLVENRL
FT                 SRNPELGTQYREFMREYEELGHMQQVHNYENPPSRCYHLPHHAVIREDSTT
FT                 TKVRVVFDASCRTPEGSSLNDALMVGPIVQEDLRSIIMRSRTHPIMLIADI
FT                 KQMFRQIRVDEPLQRIVWRPSSDAPMSTYELKTVTYGTASAPFLATRVLRQ
FT                 LSEDEQDRFPEAAEVLRMDFYVDDLFSGGNTVEETIALRRQLDSLLSAGGF
FT                 ELRKWASNVDAVLEDVPLDNKALKTSVDLDRDQCIKSLGLHWEPATDHLRY
FT                 KIGLPPINDTPLTKRIALSQIARLFDPLGLVGPVITSAKLFMQALWTLKSN
FT                 EGHIWGWDQELPPSYKERWVTYTSELPLLNDLRIERCILCSNPISIQLHFF
FT                 SDASENAYGACCYIRSCNSVGETKTALLTAKSKIAPLKQQSIPRLELCGAL
FT                 LAAELYEKVAASLKITTETYFWVDSTIVICWLSSTPSAWTTFGANRVSKIQ
FT                 LSTQNCRWNHVSGHQNPADHISRGLPAENLLNNDLWWKGPPWLSLDKEFWP
FT                 LQQPMNDSEYNSIPEARKPPTTAITATAEPSFIDLFVSKYSSYNKMLRITA
FT                 YCRRFILHCQRNSRPSTTIITSEEMTGAETTLIRLVQQQTFAAEWKQLQQS
FT                 MPVSSKSRIRWFHPFLSTDQLIRIGGRLKQTQQPFDTKHQILLPSTHSIST
FT                 LLIRSLHETHLHAAPQLLLNILRLKYWITGARSLARKITQHCVVCVRARPK
FT                 LVQQFMAELPVERVTATRPFTITGIDYWGPISLKPIHRRAAPGKAYVAVFV
FT                 CFTTKAVHLELVGDLSTAKFIQALRRFVARRGLCAEIFSDNGRNFIGAANE
FT                 L"
XX
SQ   Sequence 5783 BP; 1588 A; 1625 C; 1193 G; 1377 T; 0 other;
     ttgtccttcg agccggatag cgtgaactcc gctagtccgc cagcccggaa tctacgccga        60
     acccgccaga tattcgccgc cacgtgctga agaggttagc cgtctggaac aatctgcaat       120
     acaaggcatt cgaattgcct tgagaaggta attatctttc caacacctcc tatccctact       180
     cgtttgagct gcgcggtctt ccgccttcca gatcctttca tttcctggtc atcttcgtca       240
     tctccccacg atgtcaacgg agcgacgcat caaaggcctt aagacgcgcc taaagagctt       300
     gttgacttca ttcaacctca tcaaatcatt cgtggaagaa taccaggaag accgggatgc       360
     tcaccaagtc tcggttcgtc tggagcacct agtagccctc tggaaggacg tgaacaccac       420
     tcaagtcgaa ctcgaaacgc tggatgaaga gagcctggac caatatctga aggtccgcac       480
     agactttgag tccagctttt tccacgtaaa gggtttccta ctttccgtta ataaatctgc       540
     tgtcccagac tcaccgtctg cttctcgaac taccgcacaa gtccctccaa catcgtcagt       600
     acgactacct gacgttaagc tgcccgtatt ctccggccat cttgatggat ggctaaactt       660
     ccatgatttg ttcgtctcgc tcgtccactc gtcgcatgaa ctttcgagca tccaaaaatt       720
     ctattatttg cggtcttccc tttccggaga tgccctcaag ctgatccaaa ccattgctat       780
     cagtgccaac aattaccagg tggcgaggaa cttactggta gatcactacc aaaaccctac       840
     tattttgaag cagtcttacg tagactcgct tttcgagttc ccttcgctta aaagggaatc       900
     tgcgtcggag ttacactctc tagttgaaaa attcgaagcg aatgtccgag tccttaaaca       960
     gttaggagag aagaccgagt tctggggtat actcctgatc aaaatgctga gcagcaggct      1020
     tgacccgaca accagacgtg attgggagga gtatgcaaca tcgaaggaca acgttagctt      1080
     caacgaccta acaacgttca tccagcgcag agtcaacgtt ctgcaaacaa tcaacaagtc      1140
     aaccgaagtt ttgtcccaag gtgccccaaa gaagtcagtt tctcgttcag tcgccagcca      1200
     tggggccagt cagcccaact atcgcaagtg tctcgtctgc tccgaccatc atcccttgta      1260
     ccagtgcgtt gtcttttcaa aaatgaccct tgatgacaaa gagaaggatg ttcgacgtca      1320
     ccaattatgc cgcaactgtc tccggaaagg ttatcaagct cgtgaatgcc cttcgtcaag      1380
     cacctgtcgt aaatgcagaa gtcgccacca tactcaactc tgtcccgggg aaacccatcc      1440
     agcttctgcg aactccagaa ctgtggaatc tgccccaccg aaacctactt ctgccccaat      1500
     cgtagaagat ccaccaagaa actccgcttc tgccatctcc gaacccgtaa gctgcgcttc      1560
     ttccggccag aaacggaaaa gtgttctact ggccacagcc gtggtcacac tgatcgatga      1620
     caatggaacc gaacactttg ctagggcgct cctagactcc ggcagcgaat gctgcttcat      1680
     ggttgaatcg ctagctcaac aaataaaggc taaacgcacc aagattcagg ttccgatcac      1740
     tggtatcgga cagtcctcaa cctacgctcg tcacaagctg caatccacca tccgctctcg      1800
     agtcagcgga tattctacgg ccgttgaatt cttggtgctt ccaaaagtca ctgttaacct      1860
     accatcaaca tcgatagacg tctcatcctg ggaaattccc gacggaatcc agcttgctga      1920
     tccgtcattt tacgatacaa gacctgtcca acttgtattg ggagcagaaa tctttttcga      1980
     cctcttcaag gtttctggtc gaattcaact cggagagtct ctgccaaacc tagtcaattc      2040
     cgttctaggt tgggtcgtat ctggggttac gtcgaactgt caatcgagaa catccgtcac      2100
     tgctaacgta gccacaaccg ctgatctcca tcgtctaatg gagaagttct ggtccatcga      2160
     agaaggcaac gacaaaaatc actactccgt cgaagaagct gcttgtgaag ctcacttccg      2220
     tcgcacggtt tcccgctcgc cagaaggccg ctacattgta cgacttccct tgaaacaaga      2280
     tgctctaatg aacctcggtg acaatcgccg ttctgcgctt cgccgtttcc acctcgttga      2340
     aaatcgcctg tcacgcaacc cagagctagg tacccaatat cgagaattca tgcgagaata      2400
     tgaagaattg gggcacatgc agcaagtaca caactacgaa aatcccccgt ctcgttgcta      2460
     tcacctgccg catcacgcag tcatccgtga agacagcacg accaccaaag tgcgtgtggt      2520
     cttcgacgca tcctgtcgta ctcccgaagg atcatcccta aacgacgccc taatggtcgg      2580
     accgattgtt caagaagacc ttcggtccat aatcatgcga tccagaactc accccataat      2640
     gctgatcgcc gatatcaagc aaatgttccg tcagatccga gttgacgaac cactgcagcg      2700
     aatcgtttgg cgaccatcgt cggacgcgcc aatgagtacc tacgaattaa agaccgtcac      2760
     ctatggaaca gcaagtgcac cttttctggc tacaagggta ctacgccaac tctccgaaga      2820
     cgagcaagac cgattcccgg aagccgctga agtactacga atggacttct acgtggacga      2880
     tttgttctct ggaggaaaca ccgtagagga aaccatcgca ctccgaaggc aactggattc      2940
     cttactctct gctgggggtt tcgaactacg aaagtgggct tctaacgtcg atgctgtctt      3000
     agaagacgta cccttggaca ataaagctct caaaacttca gtggacttag atcgagatca      3060
     atgcatcaaa agtcttggtc ttcactggga accagcaacc gatcatcttc gctacaaaat      3120
     tggcctacct ccgatcaacg acaccccact aacaaaacgc attgctctct cccaaattgc      3180
     tcgcctattt gacccccttg gtctagtagg gcccgtcatt acatcggcca agctatttat      3240
     gcaagccttg tggacactaa aatccaacga agggcacata tggggttggg atcaagagct      3300
     tcctccatcc tacaaggaac gttgggtaac ctacacctct gagctaccac ttttgaacga      3360
     tttacgtatc gaacgttgca tcctctgttc aaatcctatt tcaatccaac tccacttttt      3420
     ctccgatgca tcggaaaatg catatggagc ctgttgctat ataaggtcat gcaatagcgt      3480
     tggggaaact aaaactgctc tgctgactgc aaagtcaaaa atcgcccccc tgaagcaaca      3540
     aagcatccca cgactcgagc tctgtggagc tctactcgca gctgaactgt atgaaaaggt      3600
     agcagcttcc ctgaaaatca ctaccgaaac ttatttctgg gtagactcaa ccatagtcat      3660
     ttgttggctc agctctacac catcagcatg gaccaccttc ggggcaaacc gcgtttccaa      3720
     aatacaatta tctacccaaa attgccgttg gaaccatgtt tcgggacacc aaaacccagc      3780
     tgaccatatt tctcgaggac tgcctgcaga aaatctcctc aacaacgatc tctggtggaa      3840
     gggtccacca tggttgtcac ttgacaagga attttggcct ctccagcaac ctatgaacga      3900
     ctccgagtac aacagcatcc cagaagcacg aaaaccaccc acaacagcaa taacggctac      3960
     cgcagaacca tcattcattg atttgttcgt cagcaaatac tccagctaca acaaaatgtt      4020
     gcgaattact gcctactgtc gccgtttcat cctacactgt cagcgcaatt caaggccaag      4080
     cacaacaatc attaccagcg aagaaatgac aggagcagaa acgacactaa tccgcctagt      4140
     tcaacaacaa acattcgccg ctgaatggaa acagctgcag caatctatgc cagtctcgtc      4200
     taaatcacgc attcgttggt ttcatccttt cctttcaacc gatcaactga ttcgcattgg      4260
     tggaaggcta aagcaaacac aacaaccctt cgacactaag caccaaattc ttctgccatc      4320
     cacccactca atctccacac tcctcattcg ctctctacat gaaacccatt tacatgccgc      4380
     acctcaattg ctgctcaaca ttcttcgtct gaagtattgg attaccggag ccagaagttt      4440
     ggctagaaag atcacccaac actgtgtagt ctgcgtaaga gcccgaccca aactcgtcca      4500
     gcagtttatg gccgaactcc cagtcgaaag agtaacagcg actcgtccat tcacaataac      4560
     tgggatcgat tattggggtc ccatttccct caaaccaatc catcgtcgag cagcacccgg      4620
     taaggcttat gtagcagttt tcgtttgctt cacaacgaaa gctgtacatc tcgagttggt      4680
     tggagacctg agcactgcca aattcattca ggctctacga cgtttcgtcg ctcgccgagg      4740
     gttgtgcgcg gaaattttca gcgacaatgg cagaaacttc attggtgctg caaacgaact      4800
     ttgacaaatg atccaaagta atcagcatca gcaagcaatc atcgaagaat gtgcgtcaaa      4860
     tggcatacgt tggcgcttta atcctcctaa ggcctctcat tttggaggac tatgggaagc      4920
     cgcaatccaa tctgcccaaa aacactttgt tcgagctctg gggactcaaa cattgtgcat      4980
     agaagatatg caaacacttc tcactcagat cgaatgttgc ctgaactcca ggccgatcgt      5040
     tccgctaagt gacgaccctt ccgacttcga gcctctcagt ccaggacact tcttgacagg      5100
     ttcgtccttg aaggctgttc ctgacgtaaa tgtcaccact agtccaatga atcgactgag      5160
     cgattatcag caaatccaga agctacttca acatatttgg cagaggtggc acaccgagta      5220
     cttatgtacg cttcagtctc gaaccaaatg gatcaaccat cccgtaaata tccaacgggg      5280
     ccagctcgtc gtattgaagg aggagaacgc accaccgctg cattggccta cagcacgggt      5340
     agtggatttg catccaggaa ccgatggcat cactcgtgtc gtcacaataa aaacatcaac      5400
     aggagaatac aagcgaccgg tttcgaaaat ctgcattctt ccagttgcag catccgatga      5460
     aaacaaccag taagccggtc cacagaatat catcagcctt ggcatctctt caatgtttcc      5520
     agcaaagaac acctaaaaat aaagaaatac aaggtccttt taaccaaaag gacaaggtaa      5580
     gaacctgtcc tattagttat gccgcccttg aacccgctac cgggtcttat gttttgattc      5640
     cagttttcgc aattcattcg tcgagcaata tcaattgacg ttttcaccat aaaatcgaga      5700
     taatcaacca tcgagcagag aataacatca tcacgttgaa catcgacgca actgtcagaa      5760
     tccgatcctc gaaggggcca gga                                              5783
//
ID   BEL-58_AA-LTR repbase;    DNA;    INV; 524 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_AA_;
KW   BEL-58_AA-I; BEL-58_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-524
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions 2151700 2151177.
XX
SQ   Sequence 524 BP; 159 A; 96 C; 108 G; 161 T; 0 other;
     tgttcgcata tgcgagaagc gacacctatg agtcagcgca gatcatcgat atccagcggt        60
     cattccctcg ttcaacgatt accgattcga cgacagagat acagcttgcg ttttttgacg       120
     ttttctgatt tccgcttgtt ccttcttccg tcaactgaca agtataaaag ggacctccat       180
     agcgtatgta attctctttt tctgtgtcat cgatcgaacc gacaggtgga gtccaaatca       240
     gtttcgacga gtggattgta actcctaaat ttggacatct agtgctcaag ttattgaatt       300
     attatttgaa ttagtgtgaa ttacccaatt atgaactgta aatagtagaa ttaagtaata       360
     aagttgaatt agagtagtgc gagtagataa caataaatta gtgaattagt taacctaaac       420
     ggaaatttct taattgtgtg agaagaactt acctgaagaa cttacctgtg tgggaaggtg       480
     aaaaagccgt taaatttcgt gtcacaacca ctgagcattc gaca                        524
//
ID   BEL-58_CQ-I repbase;    DNA;    INV; 4857 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_CQ_;
KW   BEL-58_CQ-LTR; BEL-58_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4857
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 269-269 (2011).
XX
DR   [2] (Consensus)
XX
CC   'CATAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           679..3570
FT                 /product="BEL-58_CQ-I_1p"
FT                 /translation="MDELKDLLKQERQLILTINGVGDFVEAYKKAEHENQI
FT                 SIRLDTLEEAMRKFFKVRRKIEAMIDDEDEDQVVGESKEARKKRLADLVVQ
FT                 REKEYNKALRDVEERYFVVKAKLVALRPIKVEPTPGADLNETCFDRSISRI
FT                 KLPDIKLPNFSGELKDWISFRDTYRSLIHSNVQLPDIDKFTYLRSALQGEA
FT                 QLEILSVDFSAEGYDVAWKALEKKYDNHKLIVKAYLDALFDIEPLRKESCD
FT                 GLSHLISEFETNLQMLKMLGEGTEAWSTILVHMLCTRLDHTTLRLWESHHN
FT                 SKAVPKYEVLIEFLRSQCTVLQSIKANRPGEGDGRQNRSRVSTTHTSSQSQ
FT                 RRCLFCEEAFHMPFSCSKLRNMSVSQRVEEVNRRRLCRNCLHAGHYADGCS
FT                 RGSCTRCGGRHHTLLHYDTPAPAGARQERSSVPNTQGQSHEAGQQQQPTRQ
FT                 QDQTQNISTQPTTSFYSVIQSTSRNTHPPPPTDFHNTTTLKAASLPAQNAP
FT                 TLSRRVLMSTAVVRVEDQFGNFSFARTLLDSCSEFCYMSSNFSKKLKFRTT
FT                 PDVLRVQGIGNGSALSLEAVRAKIQPRLATISRFSKEMQFHVLEKIANDLP
FT                 VTPVDVSQMMLPCDIILADPHFGKPGPIDMIIGAEFFFDLLAAGRRKIVED
FT                 GPTLQETVLGWIVSGKVPVSSPSVPCTATYFSSAVDLKECCELESSNVNST
FT                 HSVAEFTREELLKKTTKQDAKGRSGTLNVRHAQKVRQFTDSAGVTVKKWTS
FT                 HCPEQLKQLSKHLKDERSTLNTPHSVMHACVLCQQLWRVKSDRDQPSDESL
FT                 QQLWRVRMSLKAVATRKVPRWIGFSNDCVENKIYGSERAYGASLYLRCTAL
FT                 DGSVTFRQLMVEAKVAPLENPKREGQHSTVGDVTWQMVKASEKVTRPNTQL
FT                 VDGVMRVCVRLSNISHCKWTLRSCELEDLLAFHPEKPRIWSNLKLSTRWSA
FT                 PRRCCVNLS"
XX
SQ   Sequence 4857 BP; 1155 A; 1267 C; 1355 G; 1080 T; 0 other;
     ttggtccttc gagccggatc gaagtgaccc ggcccgaagt ggaaggactt tttgtgtgcg        60
     agcgtgtgta gtggcctgtt cgcggaacag tggccatcgc gattcggact gtgcgagtcc       120
     gcggcagttg gcgccatcgc gcagtgattt gcggctttgt gctgcagttt tttatactgt       180
     tctgcgcgtg gtgctgattg gaagaagcag ctggagcgat cgtggtctgc tgggagctgg       240
     tttactgtga tctgcggacg gaagctgcgc tgctgccgga agctgtgtgt tcgagagtga       300
     tcgtgtgtgt gtgcgctgga cgttgcccat ctaccggagg ttccaggagg gccaagcagc       360
     gttccagagg aagaattggg tttgcacgaa ttgggttaga gtgaaggagc gtttttcgag       420
     agaagttttt aataaagaag tttggatttt tcacgcgttt gcgtttattt ctggggttgt       480
     ggtttgggtt attcctgcgc aagccctgag ttgttggata gttctggtct ctgtcggtcg       540
     gtccactgct ggttctccac cttggctgtc tctccccact gtcaatcagg tcgcgtagaa       600
     cgttgagtcg atcgtttcgg tgttcgcggt tgcagtgttc cgggttttag cagtcaacgt       660
     gagtgaaggt ggtgaagcat ggacgagttg aaggatttgc tgaagcagga gcggcagttg       720
     attctgacca tcaatggtgt aggagatttc gtggaggcgt acaagaaggc cgagcatgag       780
     aaccagatct cgattcggct ggacaccctg gaggaggcaa tgaggaagtt cttcaaggtg       840
     cgccgcaaga tcgaagccat gattgacgac gaggatgagg atcaagttgt tggagagtcg       900
     aaggaggctc ggaagaagcg gttggctgat ctggtggttc aacgtgagaa ggagtacaac       960
     aaggctcttc gagacgtcga ggagaggtac ttcgtggtaa aggcgaagct ggttgcgctg      1020
     cgtccgatca aggttgagcc cactcctggt gctgacctga acgaaacctg cttcgatcga      1080
     tcgatttcgc gcattaagtt gccggacatc aagctgccta actttagcgg cgagctgaag      1140
     gattggatct cgtttcgtga cacgtacagg agcctcatcc actccaacgt gcagctgccg      1200
     gacatcgaca agttcaccta cttgaggtcc gctttgcaag gagaagcaca gctggagatt      1260
     ctgtcggtag atttctctgc agaaggctac gacgttgctt ggaaagcact ggagaaaaag      1320
     tacgacaacc acaagctcat cgtgaaggcg tacctggacg cgctcttcga catcgagccg      1380
     ctgcggaagg agagctgtga cggtctgtct cacctgatca gtgagttcga gacgaacctg      1440
     cagatgttaa agatgctcgg tgaaggaacg gaagcctggt cgacgatcct ggtccacatg      1500
     ctatgtacgc gtttggatca taccacgctg cgactgtggg agtcgcacca caactcgaaa      1560
     gctgtaccga agtacgaagt gttgatcgag tttctgcgta gtcagtgtac ggtgctgcaa      1620
     tctatcaagg ccaaccggcc cggcgaagga gacggacgac aaaaccgctc gagagtctcg      1680
     accactcaca cgtcctcgca gtcacaacga cgctgcctgt tttgtgaaga ggcatttcac      1740
     atgccgttca gttgcagcaa gctgaggaac atgtctgtgt cccaacgagt ggaggaagtg      1800
     aatcgacggc gactgtgccg aaattgtttg catgctggtc attacgctga cggatgttct      1860
     cgtggttcct gtacccgctg cggcggaaga catcacacgc tcctgcacta cgacacgccg      1920
     gcccctgctg gcgctcgaca agaaagatcc tccgttccta atacgcaagg tcaatcccac      1980
     gaagctggac aacaacaaca acccacgaga cagcaagacc agacacagaa catttccacc      2040
     caaccaacca caagtttcta ctccgtgatc caatccactt ctcgaaacac tcacccacca      2100
     ccacccacag actttcataa taccaccacc ctcaaagcgg catccctccc cgcacaaaat      2160
     gcacccacac tttctcgccg agtcctcatg tccacggctg ttgttcgcgt tgaagatcag      2220
     ttcgggaact tctcgttcgc tcggacactg ttagattcgt gttccgagtt ctgctacatg      2280
     tctagcaact tttcgaagaa gctgaagttc cggacaacac cagatgtact gagggtacag      2340
     ggcatcggaa acggctcagc gttgtcgctc gaggccgtac gcgcgaagat ccagccacgg      2400
     ctggctacga tctcgaggtt ctcgaaggaa atgcagttcc acgtgctgga aaagatcgcc      2460
     aacgatctgc ccgtcacacc ggttgacgtc agccagatga tgctcccctg tgacatcatt      2520
     ctcgctgatc cgcactttgg gaaacctggt cccattgaca tgatcatcgg tgctgagttc      2580
     tttttcgatt tgctggcggc tggtcgtcgt aagatcgtcg aggacggtcc gacgttgcaa      2640
     gagactgtgc ttgggtggat agtctcaggg aaagttccag tgtcgtcacc cagcgtccca      2700
     tgcacggcaa cctacttcag ctcagcagtt gatctgaagg aatgctgcga actggagtcg      2760
     agtaacgtca acagcaccca ctctgtggcg gagttcaccc gcgaagagct gttgaagaag      2820
     acgacgaaac aagatgcgaa gggaagatca ggcacgctga acgtccgaca cgcgcagaaa      2880
     gtccggcagt tcaccgattc agctggtgtc acggtgaaga agtggacctc ccactgccct      2940
     gagcagctca agcagctctc gaagcacctg aaggacgagc gcagcacgct caacacgcca      3000
     cacagtgtca tgcacgcttg tgtcttgtgt caacagctgt ggagagtcaa gagcgaccgg      3060
     gatcaaccgt cggacgaatc gttgcagcag ctgtggagag ttaggatgag tttgaaggcg      3120
     gttgcgacga gaaaggtgcc gcgctggatt gggttcagca acgattgcgt cgagaacaag      3180
     atctacgggt cagagcgagc ttacggtgcg agtctctacc tccgctgcac tgcgcttgac      3240
     ggttccgtca cgtttcgaca gctcatggtc gaggccaagg tggctccgct cgagaaccca      3300
     aagcgcgaag gtcaacattc cacggttgga gatgtcacct ggcagatggt caaggcgtcg      3360
     gagaaggtta cgcgccccaa cacacaactg gtggacggcg tcatgcgagt ctgtgttcgt      3420
     ctgtcgaaca tctcgcactg caaatggacg cttcgatcgt gtgagctcga agatctgctc      3480
     gctttccatc cggaaaagcc aagaatttgg tcaaacctta aattaagcac tcgctggagt      3540
     gcgccccgac gctgctgcgt taacctttct tgaagtttaa gttggtgttt gtagtctgta      3600
     tgtgtgcatg tttgttgttg aagaaagctc gctggacgct gtccagtttc gctactcggt      3660
     agacacctgt ctgtccgagc tcagcgcaca aggcgctcac ctggttatgg gattgcatgt      3720
     caagtatagt cgctaatcac ctctatcatc ggtagcacac ccacccacgc taccacatct      3780
     cactggagga agcctaggtt cctgccagtc ggtctcggct gctcgttcga cagtgggctt      3840
     ggccagctca cgcgacgatc gacatcccga ccacgaagtt ttgaagtcga agtttcatcc      3900
     ctagccagcg aagaagaaca acgcccccag gaattcaccc atgatctgcg gatcgagcat      3960
     cagaattcac ctggtggggt aagttgttcc agtttacgca cgctacatac acccactaca      4020
     tccaagtttt gttcgaggca caccaccaac ttaaccaccg acaccgacgt ccgaaagtcc      4080
     accagcatga agcgcatcca caccggcgat cagcacaccg gcgatcagca caccgacgaa      4140
     cgacacacca ccagcgtaac atctttatgg cctgcgggcc cagtatcaac gttacctggt      4200
     tgggtaagtt gttccggttt tacatttttt tctgcacaca ctacatcgca tctctcccga      4260
     ggaaatctgc aagaagaaca acgtcatcaa gatggcatcc acaacgaaga agaagaaaga      4320
     aggcatcatc cgatgcaact gcattccgtg tgcattcagt ggtcgaccgt ttgtcccacc      4380
     cgaagcagag catgttccgc tggagcataa ccccccaccc acaccgaaga agcgcagcgc      4440
     gaggctgcac cagaagcacg gttcgcgatc gtggcacacg gccagcgatc tggcgaatga      4500
     tgacgacgtg aagcagaggc tgcaaaggca gcaaaacaca ccaccacgac cgctactcgg      4560
     cggcgacccc acgagaaggc tgcaccagca gcaacgaagc agcagatgcc gttccaggga      4620
     gcagagatga agaattgcag cagagaatgc accgtcgtcg tccacgatgc aatccacgag      4680
     aacagcaacc accccacaag aagttctgtt tacagcagaa gatgctaaga tcaagtgatc      4740
     gtattgaaat tattgaatgt ttacgtttgt ttatttttga gttcaattag tattagtgtt      4800
     atcgagtagg tagtaagttt tctttggttg aaaccactgg tttcaaggcg ggcggca         4857
//
ID   BEL-58_CQ-LTR repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_CQ_;
KW   BEL-58_CQ-I; BEL-58_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-360
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 270-270 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 360 BP; 83 A; 87 C; 89 G; 101 T; 0 other;
     tgtttgaaat cgagaatagt gtaagttgcg ccctttgccc gatatttaat agcgccgatt        60
     agaccgcttt ggtgatccgt acgggagaac ccgacgggtt tgatttgttt atatgttcta       120
     ataaattgaa gtcttcagcc aacaaccaac tggctcggtt catcagaacc ccccgcgtat       180
     tttgtactgc ccgatcgtcg cgaataaagt tctgtgcgcg ctacaagccg tgtttttgct       240
     tcgaccgtgt tttgaggaag aggtcgttga cctcccgaaa gtgtgtgtgc tctggtcgag       300
     ctgaagattc cctcaacccc caatacagtc cactgaagtt gaagggctcg atccggaaca       360
//
ID   BEL-58_DTa-I repbase;    DNA;    INV; 6058 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6058
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (20-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are ~99% identity to
CC   each other.
XX
SQ   Sequence 6058 BP; 1671 A; 1515 C; 1302 G; 1570 T; 0 other;
     ttttggcgcc cccgggtgga ccctggcaag aatttaagcg tttttcgtag acaattgttc        60
     gatcgccgca gcccgcaaaa atctgcgtgg actgcgcact ctcactcaac tcgtcaactc       120
     ttcaagtgcc accgcgtgtg tgtgttggaa tcatcgctcc tgccgactcc aagtcatcgt       180
     cggatctcag ccggctgtaa agccgcaact ttacttaagt ggaagccgca ttatacattg       240
     ctgccgtttg ggcacaaact ctcgttggat tcgccggacg ttggaagtca tcatttcgcc       300
     gttggaattg cttaagtatc accaaataaa gtatgtaacc atctgctaat aagcagcatt       360
     ttcgcaaaga aatatttcta ttcgtggaca taaaagtggc atctgtagca cgtggtcgct       420
     acaccaatac ataaaagcaa atttcgccgt tttacattcg ttgctttgtc gcgagattcg       480
     ccggcaaagg ttagctgcgc tgcaagcgca cacagacacc tacatacgtg aagccacact       540
     aatacaacga caccagctac atcttcgcag ataagctgta ctacaatttg cattccttgg       600
     ctttctcatg ttcgtgggga accgcgtgtt cttaatgata tcttttgggc cgaaatttca       660
     tcgctgctct ttatttccat tgctgagtgc atcaatctca attgatttcg tttttatttg       720
     ggcctatata catacatacg tatacatact tcggaagtag cagtgcatta gtgtaaataa       780
     ttctctcatt ctctcatccc ttcgcagtgc ttgtacgtac aactgccaac atctttcttt       840
     tttaaatatg ggcaaaaagc gtataggcaa aacttcttcc gtcgaagaag gtcattccga       900
     tacaaatgat ctgcttgagc agctggaccg cgttaggcga aatattgaac ggatcaacaa       960
     ggcagctcgc acgcagacgc gtcccttcga gccgtgcgag atggaatgtc gattagacat      1020
     tctcaatgac tacattaaaa cggcattcac ccttcagcag gaaatcgagg aaatcagctt      1080
     ggacatatca agtcgtgcgg acctggaaga attatgcatc tcaggtcgtt tcttaagtca      1140
     ctttgcagta ggtcagatgc agatagggca cacgagagat cgtcttacaa cttgggacta      1200
     aatacgtcca tgtcgcacag tcggtatctc ccgcacatga agttgccgaa gttcgatggt      1260
     aattatgcgg atttcaaaaa ctttatagga ctctttacaa gcttagttga tgcagatccc      1320
     caattaacaa acgtagaaaa gttcaatcac ctgctgtcgt gcttagaaaa ggaagctcta      1380
     ggtactgtca aggcatatca aataacggac gataattacc caagggcact agagagttta      1440
     agtcgagtct atgacaatcc ttgcttaatc ttcttcgata gcgtagcgcg gctgttcagt      1500
     attcccacaa tttcttcgcc gtctgccacc tcgttaagat cgctcatcga cacagtcacg      1560
     gccatctatg agtctctgct atctcttggt gacgacaaaa ctatagcaaa cgctatgatt      1620
     atccatatag taatgaccaa agtagaccca aaaacgcgtt ctaggtggga agaacaaata      1680
     gactatcaat ctattccctt gtggcaggaa tgcgctgacg cacttaacaa gcggtatcag      1740
     catcttgcag ctgatgaatc gacctccggg agggtaaagc aaacaaagcc caatcgcgac      1800
     ggcatcagcc gaaaggttag taaaacttcc ctaactgttt cacagtctac cgaagctgcg      1860
     aacacaaaat gctacttctg caaagcaaag gaacattaca ttcaatcttg tccgtccttc      1920
     gcaaacgcat ccgtggaatc gcgttttaaa tttgccaaaa gttgtccgct ttgcataaat      1980
     tgtttacgta aaggacatgg cgtccctcaa tgcaaatcct cattttgccg agtctgctca      2040
     aagcctcacc acacactgct acacaggtac aatgtggtgc cgccaagtca aactggcgct      2100
     gtggaagcaa ctgcacagat catcgatact caactcactc agcaatcact taacgcatca      2160
     ttgagccata gtcatcaaaa tggtgtcaat caggttttgt tagccacagc tctggttgac      2220
     gtaaagagtc aatcaggtca aaaacagacg gcgagggttc tcttagattc gggctcacag      2280
     gttaatttca taaccgaaga actggcaaag ggtcttcaat tgaagaggta tcaacacaac      2340
     acgacattat caggcatcgg caattcacat ttcaccgctc gccatgcagt tcaaactacc      2400
     atttgctctc gtgtcaattc ctttgaggtc gtggttgaat ttattgtgtt aaaagccatt      2460
     tcatcgtatc atcctgtgca tttcacagcg cccactgatt ggattcccgg agacattcgc      2520
     cttgctgatc ccatttttaa caccccgaag cgcatcgacc ttctcatagg ggcagacgtg      2580
     ttttttgatt tgctgacaac aggaaagatt cgacaaagcg actccggtcc cactcttcag      2640
     aacacagtat tcggttgggt agcttctgga agttggacgg ttccgcgacc cttagcatta      2700
     tcagcgtgct gcatgttagg gacggttgac gagactccgg cagttgactc ccttctaaag      2760
     agattttggg aaatcgagct agtaccagaa cttacaaaat cccagttgta cacacccgag      2820
     caggcggcgt gcgaaaaagc gttcgcagat acaatacgtc aacattcttc tggccgattc      2880
     atagtaagcc ttcccttcaa atcgagcccc aatagcttag ggcactcgcg ctcgagcgac      2940
     gcatgtatgc caaccctaca atgcttgaga tgtatacaga tttcatgcaa gagtatttgt      3000
     cattaggaca tatgtcagca acagacaatg tcattcccag caaacctcat tacttcatcc      3060
     cctagtgcat actcagacct caaagctcgt ctacaaagct tagggtggtg ttcgatgctt      3120
     cttcaaaaac aacctcacaa ctatcactaa acgacctcct tatggtgggt ccaacaatcc      3180
     agccttgcgt gtatgcaacc ttgctgagat ttcgcttacg gccatttgcc atgaccgccg      3240
     acatcaccaa gatgtaccga caagtgctag tagaggagaa tcatcgagat tttcaaatga      3300
     ttgtctggcg gcgcagccga gaagagccat tacaactgta tcgacttaac acagttacat      3360
     acggcaccgc tagcgctccg tttctcgcca tacgttgctt aaaccagtta agcaaaacat      3420
     ttgccaaatc gcatccgaaa ggatcgcagg caatagtcga cgacttttat gtcgacgatc      3480
     tcctatcagg agcagattcc ctggacgatc ttaaatcact caaacaggaa atttcacaga      3540
     tcctcgaatc tgctggcttt gtgctagcca aatgggcagc gaactgcgac cttagcgaaa      3600
     gtccgttgca agaagcaaaa attcctcttg gcgacactgg agacactaag actttagggc      3660
     ttacttggag tccaacgcag gatgtgttta aattcaatac tctcgaactg gatggaaacg      3720
     ccccaccaac aaaacgttcg atcctttcat tcgcatctcg cctgttcgat ccattaggtt      3780
     tgatttgtcc tctcgtcacg cttgccaaaa tcttaattca gaaactttgg tcgctgaata      3840
     tagattggga tgaagaaatt ccgccagaga tgtataagcg ttggaatgca gtcgcttcct      3900
     cctttcaaga gatagggtac attcagattc ccagatacgt cggcacaagt caaacaggca      3960
     gctatcaaat acacggattc gcggacgcat cagaagatgc atatggttgc tgtatctacg      4020
     tccgtgctgt gactacagag ggcatcaaaa ccactttatt gacagcaaag tcgaaagtct      4080
     cgccaataaa tcgcctatgc ataccgaggt tagaactttg cgcagcccat ctacttgcta      4140
     aactttggag tgaagtccag aaattgatca attttagtgt agacaaagta gtaatgtggt      4200
     cagattccga agtagttctt tttggttacg cacaagtctc tcaaccctca aaaccttcgt      4260
     agccaacagg gtctcagcca ttcatgaact cgccccaact gcaacttgga gacatgtgcc      4320
     aactagttgc aatcctgcag acctgccatc gcgaggctgt acggtcaagg agctagacgc      4380
     gtccttctgg tttgatggac cacagttctt gagtgctgac cccagtactt ggccaatcaa      4440
     tgaacatttg gcgaaggctg taccagacgc ccaggttgaa attcgagcta aggctgcatc      4500
     acacaccacc tcaacggttg agtcgaatcc aattcttcgc gtcgttgaaa atttctcctc      4560
     gtatctaaaa acaatacgaa tcgtcgccta tatttctcgc tttacaagag gccgaaattg      4620
     gattctgtgg actagcacta cgctctcagc ttccgaatta gctttctcgt ttttaacgat      4680
     cgttcagtct gttcaacgta aatcatttgc aatcgaattt gaaaagttgt ctaagaacca      4740
     gtacgtacaa aattcctttt aaaagcttaa cccattcatt agcatagaaa cagttggtaa      4800
     ttgtacgtta caattaatgc gagttggtgg ccgcttgttg cacgctccat tagaacataa      4860
     tgccaaattt cctttattaa tgccgaaggg aaatgatttc ataaggttgt acatccagca      4920
     tcttcatcgc accaattgcc acgttgggcc acgcgcactc gtcggcttgc ttcgccaaag      4980
     tatctggctg atcaacgccc gtcgagaatg cagtgctgtt gtacggcaat gcactcactg      5040
     ctttcgatac aagcctaggt tgtattctca aataatgggc aatctaccgg ctgatcgcat      5100
     tctaagcaat cggccattca gagttagcgg agtagatctt ttcggcccaa ttagagtgtc      5160
     attaggaatc cgcggcaaaa ccccactcaa aatgtacgtg tcagttatta tatgcttccc      5220
     gacaaaagcg attcatatgg aactcataaa ggatcttacg tctaactcct ttctactttg      5280
     tctcagcaga ttcattggtc gccgcggacc tctcgaaaaa ttgtactgcg acaacgcaac      5340
     aaatttcgtg ggttcggcaa gaatgcttca ggagatcaaa gccaatctcg cagataacaa      5400
     ggaaacgcac agcactctcg gcggatctca ccacttcgat ttcgtcttca taccccctcg      5460
     agcaccccat tttgggggct tgtgggaagc ggctgtgaag tccgccaaac atctcttcat      5520
     caaagcagtc ggaaacgctc tgttgaagga agacgaagtc cagactgtgc tcgtcgaggt      5580
     cgaagcggtg ctaaactcac gtccattggt cgcagatagc aacagcccta acgatgggga      5640
     agctatcact cctgcacact ttctcgttgg caccaccctc gctacattgc caccagtaca      5700
     gttgccacca tcgatgaagg ataatctgag ttgcctgaag cggtggcaac tcgtatcagc      5760
     aatcaagcaa cgtttctggc gagattggtc tcgcgattac ctcacaagct tgcaacaaag      5820
     ggccaaatgg acaaaggatc tagcaaacgt caagactgga accgtcgtcg ttatcaaaga      5880
     ggataatttg ccaccccaga tgtggttact cggcgtcgtc acagaagtga tcgctgggac      5940
     cgacggcaag gtgcgagtgg caattgtcaa gaccaaatgc ggaacctaca agcgagcaat      6000
     tcactatcta gccccattac cattggattg aagatctgga gctcttcaac gcgggcga        6058
//
ID   BEL-58_DTa-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-58_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-381
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5675-5675 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 381 BP; 107 A; 83 C; 71 G; 120 T; 0 other;
     tgtatagtca tttcatatgt ttatcgtatt ttttatagta ttctgaattt tgtacagctg        60
     atacatgttg cgccacagat agctgtgagg cggggcacag cctgctgaaa tcgctaatta       120
     aaacaccccc aacggctcga catgtaacgg ctttcttttg aatttattac catgttaacc       180
     aaccctgaaa acctactatg ttaagttgca ctcgaagcaa ccctgatcgc tgttagcttt       240
     ttcgccccac ggcgaattgg ctcacacggc acttggaata aaactgcaaa aaagagaact       300
     tcgtgtgtct aattatttaa aacgctaagt tctgtcggtg tctacaagtt gctttaataa       360
     ctcatttgct ttaggcaaac a                                                 381
//
ID   BEL-591_AA-I repbase;    DNA;    INV; 6494 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-591_AA_;
KW   BEL-591_AA-LTR; Pao_Bel_Ele161; BEL-591_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6494
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [5557-6105] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           512..1903
FT                 /product="BEL-591_AA-I_2p"
FT                 /translation="MWVNECAEQKDDINVPVITDAGCLLPPAPSNQTKQNA
FT                 ATGSCIPTQVELPDKENQQSPLKHPSMPNHRSTSAVNPTMDDSKTDPNPDE
FT                 DATRHAVFSKITGNVPLAQSTPAKDPSFEQQAVVTASSVYPRAEEVANLAI
FT                 APSGMPVHTYNSVQSAPEPATYSFSSSVPAARLMPPAIAIPQLAPIPEYSS
FT                 ELQSSVAQTVPRIPGPSVQQHQHGSLASSHFSTSVLPPMLHATAMPPPVSA
FT                 PYRPPSYPVFPPGYQAEPASVLAPAHGPVLAAPPVSSFSSTSAMSLLPPSA
FT                 PVVPNAVPLREVSLPQPPGKPDNCPLPVNMSSASNDDNLQHLIRQFGSIAL
FT                 SPSQSPLLNANLATFAPSPSQLAARQVMPRDLPPFSGNPADWPVFISSFMN
FT                 TTLACGYSSAENLCRLQRSLKGAAYEAVQSRLLLPESVPHIMETLHLLYGR
FT                 PELLIAALLDKVRSAPPPK"
FT   CDS           3634..6492
FT                 /product="BEL-591_AA-I_1p"
FT                 /translation="MFHQILIRKEDRHSQRFLWRNDPSKTPDVYLMDVATF
FT                 GSTCSPASAQYIKNRNAKEFQGLYPRAVEGIVDNHYVDDSLESYESAEEAI
FT                 KVSQEMRFIHKEGGFELRNWLSNSRDVLDALGEGKPGEDKRFAADKQNDYE
FT                 RVLGLLWLTQEDAFSFSTAMKQEISDLIRADEHPTKRQMLKCLMSLFDPLG
FT                 LLSLFVVHGKILLQEVWREGIQWDEKVNEELHQRWKNWIRLFEEVRSLKIP
FT                 RCYFSCATKQRYQDLQLHIFVDASESAYCAIGYFRTSNADGITECALVAAK
FT                 TKVAPLKTQSIPRLELLAAVLGARLSQFIEENHTVRITRKVFWSDSATVLC
FT                 WLRADHRRYKQFVACRVGELLTITDVENWRWVPTKHNPADIATKWGHGPDL
FT                 TANSIWFKGPAFLGSSEPAWPEQKVNKPSTEEELRPCYTHKAARIPERLVE
FT                 LERFSRLTKAIRATAYVYRFVENLKRKIARCERFVGPLSSEELQSAKNLLI
FT                 RETQWQCFPDEMTVLKHNQSKSITEQIPLDKSSALHQLCPMLDEQAIIRVD
FT                 GRIGAAPNVDKETKFPVILPRKHKFTMLLLDNYHRRFLHGNTETVVNEVRQ
FT                 SYYIPRLRMAVNSAAKACQWCRIYKSLPKIPRMAPLGPLARMASFVRPFTY
FT                 TGLDFFGPLMVKIGRSSAKRWIAVFTCLTIRAVHVEVAHSLTTDSCVKCIR
FT                 RFICRRGAPAEIYSDNGTNFVGAARLLKEQEEQLAVTFTGTATKWVFNPPG
FT                 TPHMGGAWERMVRSIKTAVETAYNNNRKLDDEALETFMVEAEAIVNCRPLT
FT                 YLPLTSEESEALTPNHFLLGNSSGVRQPAVEATSSSDALRSSWHQVQQQLD
FT                 VFWRRWIREYLPTLTKRPKWCGEARAIADGQLVLVIGEGNRNEWTRGRVVQ
FT                 VIQGADGRIRQAIVQTARGLVRRPVARLAVLEVDEDSKTGPGGQCYGGE"
XX
SQ   Sequence 6494 BP; 1737 A; 1649 C; 1650 G; 1455 T; 3 other;
     atctttagaa aaatcgacag cagtttcgat caacgcgtcg atatggaatc tattccacat        60
     aaatcccttc cggatatgca cggagatcta acacggcatc ccgcacacac gctcgacgaa       120
     aatcgtacag attgcgtaca gtgcgaccgt cgaaacggtg aggatgcaat ggtgcagtgc       180
     gacgcttgtc agatgtggtg gcacttctcg tgtgccggcg tgacagactc gatcaaggac       240
     cgatcgtggt catgcccaaa atgtcatgcg aacgatctgt gcagtagcgt gtccgtttcc       300
     cgacattccc gaacctccaa cagttcggcg aaatccgaga gggtaaatct acagctggag       360
     aagctcgcag agcttcacgc aatgaaggag aagttcatcg aggagaaata taagttgctc       420
     gaaagtcaac tcgaatcgga acgagaccac gaaagtgttc ggagcaaacg aagccgagtt       480
     aagcaagcaa accagcctcg cgaaggtagc gatgtgggtg aacgaatgtg cagagcagaa       540
     agacgacatc aacgtgccag tgataacgga tgcaggttgt ttactgccgc cagccccttc       600
     gaaccagacg aagcagaatg ctgctactgg aagttgtatt ccgacccaag tcgagttgcc       660
     agataaggag aatcagcaaa gtcccctcaa acatccttcg atgccgaacc atcgctcgac       720
     ttcagcagtc aatccaacga tggacgattc caaaacggat ccgaaccctg acgaagatgc       780
     aacaagacat gccgtcttca gcaaaattac agggaatgtg cccttggccc aatctactcc       840
     agcgaaagac ccttcctttg agcaacaagc tgtcgtaaca gcatcttccg tgtacccgag       900
     agcggaagag gtggccaatt tggcgatcgc gccgtcgggc atgccggtgc atacgtacaa       960
     ctcggtacaa tccgctccgg aaccagcaac atattcgttt tcctcatcgg tacctgcggc      1020
     tagattgatg ccacctgcaa tcgccattcc ccagttggca cccattccag aatattcatc      1080
     agaactgcag tcgtcggtag cacaaacagt gccaaggatt ccaggtccat ccgttcaaca      1140
     acatcaacat ggaagtttag cgtcatctca cttcagcacg tccgtattac ctccgatgct      1200
     tcacgctaca gcaatgccgc cgcctgtttc tgcaccatac cgtccaccat catatcctgt      1260
     atttccaccg ggataccagg cagaacctgc atccgttcta gcgcccgctc atgggcctgt      1320
     gttggctgcc ccgccggtga gctcgttttc atctacgtct gcgatgtcgc tcctgcctcc      1380
     gtccgcgccc gtggtgccta atgcagttcc tcttagagaa gtatcactcc ctcagccacc      1440
     aggtaagcca gataattgtc ctctgccagt aaatatgtca tcagccagta atgacgacaa      1500
     ccttcaacac ttaataaggc aatttggtag tatcgcttta tcgccctcgc aatcaccatt      1560
     gctcaatgca aatttagcca cctttgcccc ctctccctcg cagttagctg ccaggcaagt      1620
     catgccgcgc gacttacccc ccttttccgg caacccagcc gactggccgg tattcataag      1680
     cagttttatg aacactacac twgcttgtgg gtactccagt gccgaaaacc tttgccgcct      1740
     tcaacgaagt ttgaaaggcg cagcgtacga ggccgttcaa agccgattac tcttaccgga      1800
     gtcagtgcct cacatcatgg aaactctcca tttgctttac ggtcgcccag agctgctgat      1860
     tgcagccctc ttagacaagg tgcgctcagc accaccacca aaaktggaca aatttcaaag      1920
     tataatcgac tttggcatgt ctattcaaag tctctgcgat caccttgagg tcgctggaca      1980
     aaccgcacac ctstcaaacc cttcccttct cgcggaactt gtcaccaaac tcccaccgca      2040
     tcttcaaatg gaatggggat catatctcca gggattctcc gaggtgaatc tcaaaacgtt      2100
     tggcctcttc atgtccagtg tagttaaagc agtgagtaaa gtgacagtgt atgctagcag      2160
     cagcggaaga aatagtgtgc acccgaagtc aagaggaagt gtgaattcgc atctcagtga      2220
     tactaacgac agtgcggaag ccaagccatc tactgttcga gaggaagtga aggagtgtcc      2280
     cgcttgcaaa aacgttggtc atcgtatcca ggattgccga aattttcaat ccctttctgt      2340
     ggatggccgt tggaagtgtg tccagttgaa caagctttgc cgaaattgtt tgagctcgca      2400
     tggccgaaga agctgcagga aaaccagcaa ttgtggaaca aacggctgcg aataccgcca      2460
     ccatccaatg cttcattcga cgcggagtac cacggattcg caggcgcagc catcagcgaa      2520
     taacgcagag aaccttacgc atcgccagcc taaacagtcg ctgctcttcc gaatagtacc      2580
     agtgaccctg catggtccca gaggaacagt ggacactttc gcgtttctcg acgacggatc      2640
     atctttaaca ctcatcgagg atagcctggt taaagaacta ggtgccgaag gtgtaacgat      2700
     gcctctgtgt ttgttgtgga cggctaatgt gacacgcaca gaaaaggtcg aagcaaatgt      2760
     cgctggtcgt ctcatcgact gaaggtaggc agtacaagtt agatgaagta cagacagtta      2820
     aggagttgtc gctgcccatt caatcgcttt cgtacgagca tctttctgcg cagtttgcgc      2880
     acctcaaagg acttccagtg aagagctaca ctaaggcgat tccgaagcta ttaattggaa      2940
     tcaacaactt ggatttgatg gttccgttga gagtacgaga aggacttcgg cgcgagccta      3000
     tcgctgctaa aaccagatta ggctggtgta tttatggcgg tgcacaaacg atggtcaaag      3060
     ctatcagtaa ctaccatgcc tgcggctgtt ctctgatcaa atctccacaa tctggtcaag      3120
     gacttcttcg cgacgaggat gctggcgtgc aaccccagtg ctctcttgtc ggagtcgata      3180
     agcgtgctct acggatatta gcggatacaa cggttcgaat cggagccgct ttgaaacagg      3240
     tctgctctgg aaattcgacc atgttgagct acctgatagc tatggaatgg ctctccgacg      3300
     gctccagtgt ctgaaaaacg aatgagtcgc aatcctgaac tcaaacactc tgcagcaaca      3360
     actggaggac taccagataa aaggctacgc gcatcgtgcc acagaggacg agttggccaa      3420
     cgccgactgc gacgcgtttg gtacctaccg ttgggagcaa ttacaatccc cggaagccag      3480
     gcaaggttcg catgatctgg gatgctaggg cggccgtgaa cggaatctcc ctcaactgta      3540
     ctgctgaaag gtccagatca gctgacttcc cttcccggag tgctggtacg attccggcag      3600
     ttcaaagtgg gcgtctcctc tgatataaag gagatgttcc accaaattct aattcgcaaa      3660
     gaagatcgcc actcccagcg gtttctttgg cgcaacgatc cttccaaaac acctgatgtg      3720
     taccttatgg atgttgctac gttcggctct acatgctccc cggcgtctgc tcaatatatc      3780
     aagaacagaa acgccaagga gttccaaggg ctataccctc gagcagtcga aggcatcgtg      3840
     gacaaccatt acgtggacga ctccctagag agctacgagt ccgcagaaga ggcgatcaag      3900
     gtgtcacagg aaatgcgttt cattcacaaa gaaggcggat ttgagctaag aaactggcta      3960
     tcgaatagca gagatgtcct ggacgcttta ggggaaggaa aacccggaga agataagaga      4020
     ttcgcagcgg ataaacaaaa cgattacgag cgggtactcg gactcttgtg gttgacgcaa      4080
     gaagacgcct tcagtttctc aactgcgatg aagcaggaaa tcagtgatct gatcagggct      4140
     gacgaacatc ctaccaaaag gcagatgctg aaatgtttaa tgtcgctgtt cgacccgctg      4200
     ggcctattga gcctgtttgt agtgcacggg aagattcttc tacaagaagt ctggagagaa      4260
     gggatacagt gggatgaaaa ggtgaacgaa gaactgcatc aaaggtggaa gaattggata      4320
     aggctattcg aagaggttcg cagcctcaaa attcctcggt gttacttctc atgtgccacc      4380
     aaacagcgat accaagatct ccaactccac atatttgtag atgccagcga atctgcgtat      4440
     tgtgcgattg ggtattttcg tacgtcgaac gctgatggaa tcaccgaatg cgcgctcgtc      4500
     gcagcgaaaa ctaaggttgc ccctctgaaa acgcaatcaa tcccccgcct ggaactgctg      4560
     gccgcagtgc taggcgctcg tctgtcgcag ttcatcgaag aaaaccatac cgtacgcatt      4620
     acaagaaaag tgttttggag cgattcagca accgtcctct gctggctgcg ggctgatcat      4680
     cgacggtata agcaattcgt cgcatgtaga gtgggagaat tgctgacgat caccgatgtg      4740
     gaaaattggc gttgggttcc caccaagcat aaccctgctg acatcgctac aaaatggggc      4800
     cacgggcctg acctaactgc gaactccatt tggttcaaag gtcctgcgtt tcttggatcg      4860
     tcggaaccgg catggccgga acagaaagtg aacaagccat caacagaaga agagctacgt      4920
     ccctgttaca ctcacaaggc agcacgtatt ccagaacgtc tcgtagaact tgagcgcttt      4980
     tcccgattaa ctaaagcaat ccgggctacc gcttacgttt accgtttcgt ggaaaaccta      5040
     aagcggaaga tcgcacgatg tgaaagattc gttggtccac tatcatcgga agaactccaa      5100
     agtgccaaaa acctacttat tcgagagaca cagtggcagt gcttcccaga tgagatgacg      5160
     gtcctgaagc acaatcaatc gaagtcgata acggaacaaa tacccttgga taaaagcagt      5220
     gctcttcatc aattatgtcc aatgctagat gagcaagcca ttattcgcgt cgatggtaga      5280
     attggagcgg ctccgaacgt tgacaaagaa acgaagttcc ctgtgatcct cccaaggaaa      5340
     cacaaattta cgatgctgtt gctggacaac taccatcgta gattcctgca cggaaacact      5400
     gaaactgtgg tgaacgaggt gcggcagtca tactacatcc cacggctcag gatggcggtc      5460
     aatagcgcag ccaaggcgtg tcaatggtgt cgtatctaca agagcttacc gaaaattccc      5520
     cgcatggcgc ctttgggacc attagcacga atggcgtcct ttgtaagacc gttcacctat      5580
     accggcttag atttctttgg tccgctaatg gtaaagatag ggaggagtag cgcaaaacgc      5640
     tggatagccg tttttacgtg cttaacaata cgagcggtgc acgtagaagt tgctcatagc      5700
     ctgactactg attcgtgtgt caaatgcatt cgccgcttca tctgccgcag aggagcacca      5760
     gccgaaatct attcggataa cggcactaat tttgtgggag ccgctagatt gctgaaggag      5820
     caagaggagc agttggccgt tacctttaca ggaacggcaa ccaaatgggt gtttaaccca      5880
     cctggcactc cgcacatggg cggagcatgg gagcggatgg tgcgctccat caaaactgct      5940
     gtagagactg cgtacaacaa taaccgcaag ttggacgacg aggcgttgga aacatttatg      6000
     gtggaagctg aagcaattgt gaactgccgt ccattaacgt atctgccact gacgtcggag      6060
     gaaagtgagg cacttactcc gaatcacttt ttgctgggca attcaagtgg cgtccgtcag      6120
     cctgcagtag aagcaaccag ttcgtcggat gccctccgtt catcgtggca ccaagttcaa      6180
     caacagctgg acgtattttg gagaaggtgg ataagggaat atctgcccac gttgacgaaa      6240
     cggcctaagt ggtgtggtga agcacgagcc atagctgacg gacagttggt gctggtaatt      6300
     ggcgaaggaa acagaaacga gtggactaga ggccgcgtag ttcaagtgat acaaggggcg      6360
     gatgggagaa ttcggcaagc tattgttcaa actgcgaggg ggcttgtgcg tagacctgtg      6420
     gctaggttgg cagtactaga ggttgacgaa gatagtaaaa ctggacctgg tggccagtgt      6480
     tacgggggag agga                                                        6494
//
ID   BEL-591_AA-LTR repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-591_AA_;
KW   Pao_Bel_Ele161; BEL-591_AA-I; BEL-591_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-572
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 572 BP; 205 A; 104 C; 89 G; 172 T; 2 other;
     tgttgatact ggcagcactt ctggtcacac ktcaatgacg acaggagtsa accgttcaac        60
     ggtctgtcaa accgatggca tgacaaagag acaatgcaat gatctgctat gtcattctta       120
     tcattgatag ctagagagca aaccagatag caagtaattt gtaaaaggtg atttctaaaa       180
     ctttgattat ttgttattct aaactacaac taaatttgaa cttacagtta ttctcaagct       240
     gtttctaaac agtaaatttg ttccctatta taaaagttca tgcacacaca aattgtaagt       300
     tgttatatct aatttgttaa aacttaacct aacttatagt aaatctacag attacacgtg       360
     tgagaattcg ttagtacggt tggattgtgt caaaataccc tcttataccg atttttgtaa       420
     gtaccatgca acaattcaat taccttaaaa ctaacgataa aataaaatta cagctaaagc       480
     tacatttaca acataaaaca cggtcgttgt aaattgctca aagagatcga acaggggttc       540
     acaatctaca ccgataaatc acaacgggaa ca                                     572
//
ID   BEL-592_AA-I repbase;    DNA;    INV; 6704 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-592_AA_;
KW   BEL-592_AA-LTR; Pao_Bel_Ele30; BEL-592_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6704
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5574-6155] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4290..6548
FT                 /product="BEL-592_AA-I_3p"
FT                 /translation="MQELWLLSCDWDEPVPEPVKSKWENYHQELSTISEHR
FT                 VDRYAFLPDSKIQLHTFADASQNAYGACTYARCEDNQGRIRIQLLASKSRV
FT                 APLKRITIARLELCAAVVAAHLHDRIKKATDIEISASYFWSDSSVTLQWLR
FT                 SPPNTWPTFVANRVSEVQQYTHGCQWKHVSGIENPADLVSRGMSVEEFISS
FT                 KLWHHGPNWLARPAQDWPVSIPPGVPAEELEMKSTVAAVQVSSSVHPIFLR
FT                 WSSYNRLLHVVGYIIRFVSNTRSKTRTNPSSRASPVPECLTVNEIANAKTI
FT                 LTRLAQEDGYSPELKEIRKVKKVSKQSPIRNMSPFIDPEGVLRVGGRLNFA
FT                 LLPYQAKHPALLPTTHPFTRLIVEHFHRKLIHGGGRQLLTAIREEFWPPRG
FT                 RKLVQSVVRNCFRCVRLNPVPAQQQIGQLPAQRVIPSRPFSVTGIDYAGPL
FT                 YLRPIHKRASPAKAYLCLFVCFSTKAVHLELVGDLSTQAFLCSLRRFISRR
FT                 GRPAHIHSDNGKNFEGAKNELAELFARFQDQSQHNEIATFCSDEGITWHLT
FT                 PPKAPHFGGLWEAAVKVAKKHLFRQLGSSRLSFEDMCTVLTQIEAIMNSRP
FT                 LLPMTEDPNDLAALTPAHFLIGSSLTALPDPDIHSIPTSRLQHYQQLQQHV
FT                 QRFWIHWRQEYLQELLKDTRGWKRNEQIVPGRLVILVDEMQAAIRWPLARI
FT                 ESVLPGKDQLARVVLLRTSRGIITRPITKICLLPCSSVFQNAEDVPSPSSN
FT                 SK"
FT   CDS           join(2027..2890,2894..4039)
FT                 /product="BEL-592_AA-I_1p"
FT                 /translation="MKCQRFNNLSPNERQQLVSSKRLCHNCLRGNHFARNC
FT                 PSSFTCRRCNRRHHTLLHPEQPEGPQRSSSQGSASRSAPPATSASSNASSV
FT                 VESSTQSMVAASESMPSVEASVTVQHPRENVFLLTVMVKIVDEYGIEHLAR
FT                 ALLDSASQPNLITDRMAKILRLRRHKVNVTVQGAGKLSNSVRESVFAQVQS
FT                 RRGDFSCGVNFLVMDKLTANLPAQSVSTAGWKIPKDLYLADPSFNESQPID
FT                 MLLGAKHFYTFFPSAARLQLDTNLPLLVDSVFGWIVVGSAGATSPVQSSAV
FT                 CEAVTVSMVSLEDSLERFWKTEELTTTDNYSVEERRCETLYSSTVSRNSEG
FT                 RYVVRYPRKTGFDEIIGESQKNALRRFGFLERRLERHPQLKDEYHQFMREY
FT                 LSLGHMRLVDADDEERSRTYYLPHHAVIKEASTTTKVRVVFDGSAKTSTGF
FT                 SLNEALCVGPVVQDELIDIILRFRTFPVALVGDIAKMYRQVLIHPDDTPLQ
FT                 RILWRFTQLSPVQTYELLTVTYGLAPSSFLATRTLKQLADDEGEPFAKGAP
FT                 ALKKGFYVDDFIGGAQSVKEAILLRDELSELLKKGGFELRKWTSNRLEVLQ
FT                 GLNDEQIGTKSSLEFKPHETIKALGINWEPEADVLRFDSQIRDDNAPPTKR
FT                 SILSDIAKLFDPLGLISPVHT"
XX
SQ   Sequence 6704 BP; 1654 A; 1760 C; 1555 G; 1733 T; 2 other;
     taaaatttgg tgccgtgacc aggatacgtc ggaccgcgtg gtgaggtgtc tactgggcgc        60
     tgccatcttg gactccggct cgttggattg ttctggatct ggctgctgct gcttattgta       120
     ttactacaag gctcgaataa tcgagcggaa ggtaaagacc tctccacttc gattttgctg       180
     tacccacggg taccctttag atcccttttc tctcttattg catgcgtgaa tctacttggc       240
     attcgctgcc gttcgtctgg agtgtgatac tgctatcggc ctctgagcgc cattgtgccg       300
     ccgatttcca agaacaattg gactattgta tcgcagtggc gtccccagcc acagttcctc       360
     gcctgctgca acgcattcat tgattttggc ggtttttctg ctactgtggc gctcccagcc       420
     ccgacacgac acgtggtgtg cttgctaccg cgtgccatcc agttgctgtg cctgttgatt       480
     gtccatcgtg tggcttttcc aacaacaagc gtgattgctt tcgacttgcc aatccagcac       540
     agggctttcg gttacccagt acggacggta ctacgactag ttcctgttgg cggtattaaa       600
     aatacaaggc acagtttgcc ttggaacagg tgagcacctt tccaagtaat ttattgcatt       660
     tgcgtgggtc tactcttggt ccattggtcc acaggtatcc ggctttcgga ctgcattgtc       720
     atggattctc agcagcgaga ccagctgcta acaagaaggg atactctgct tgctgcgttg       780
     ggtcgggcag aggcttttgc tgccaacttc gatgctcaac gagatcaggc gcaacttcca       840
     ctacggctgg agtacatcaa cggactgtgg aacagcttgg agacggtcca agggcaactc       900
     gaggatggag aaaccactga tcaaggtagg gcagggcatg cgacatttag agctgaactg       960
     gagccgcgtc ttttttcaat aaaggctagc ctgctatcaa aattgcctcc acctcccgtt      1020
     attagcagtg cagtccctca cccccctcak gtgtcctcca ctctctctgg gatcaaatta      1080
     ccaacgattt cgcttcccga gttcaacggc gactatatgc aatggctggc atttcatgat      1140
     actttcctgg cgcttattca ctccaatccg gacctgccgg atatccaaaa atttcactat      1200
     ttacgtgcag ctgtcaaggg tgaagctgcg cagttaatag agtccattgg aatcagttcc      1260
     gctaattacg gcttggcttg gcaaacgttg gagaaccgat attcgaacga ttaccttctc      1320
     cggaggcgcc acctgcaggc actcttcgac atcccctgca tgaagaagga gtccgctgcg      1380
     tcactacacg ggttggtgga cgagtttgaa cggcatacga aaattctgca tcagctcgga      1440
     gaaccgactg actcttggag ctccatcctg gagcatttgc tttgcacgcg tctgcacaac      1500
     gatacggtca aggcttggga ggatcacgcg tcgactgtgg cgaatcctac acacttaaat      1560
     tatttcaccg acctcagtaa aatttttcgc cgagaaccca acagctgaga gctcggtaaa      1620
     ttttaacgcc gaatctcggt acttatttta ccgagatttc ggcaatccga attttttgcc      1680
     gagatctcgg cgaacgttac cgagattcgg taaacgttta ccaagatctc ggtaaaagtt      1740
     ttaccgagaa tcgtcaaatt attaccaaga tatcagctgt tgggttctcg gcgaaaccgt      1800
     ttaagtgtgt aactacaact gtttgattga ttttctgcag cgacgtactc gggtattgga      1860
     atcgatttcc gtgaaccacc atgcaccgga tttgccgccc tcatctggtg gtgcagccca      1920
     cccgccgaag aagagttacc agcattccca gtttcggctg tcatcatgtg caacaaccac      1980
     caatcaaggc gaaaagtgca tcgtttgtgg tcagtctcat tctgtaatga agtgccagag      2040
     gttcaataat ctttccccaa atgaacgcca gcagcttgtg agctcaaaac gattgtgtca      2100
     caactgcttg agaggaaatc atttcgccag aaattgtccg tctagcttca cttgtcgtag      2160
     atgcaatcga cgccaccata ctcttctcca cccagaacag cccgagggtc ctcaaaggtc      2220
     tagcagtcaa ggttccgctt ctagatcagc accacctgca acgtctgctt cgtcaaatgc      2280
     ttcttctgtc gtggagtcgt ctacgcagtc catggtcgct gcctctgaat ccatgcctag      2340
     cgtggaagct agtgtaacgg tgcagcatcc tcgtgaaaat gtctttctcc ttacagttat      2400
     ggtaaaaatt gtcgacgagt acggtataga acatctagct cgtgctcttc tcgacagcgc      2460
     ttcccaacca aacctcatta cggaccggat ggctaagatt ctacgactac gtcgacacaa      2520
     agtgaacgta acggtgcagg gagccggcaa gctttcgaat tcggtgcgcg aatcagtatt      2580
     cgctcaggta caatcaagac gaggagactt ttcgtgtggt gtaaattttc tggtgatgga      2640
     caaattaact gctaatctcc ctgcgcaaag cgtttccacc gcaggatgga aaataccaaa      2700
     agatttgtac ctagcagatc catccttcaa cgaaagtcaa ccaatagaca tgctactagg      2760
     ggcaaaacat ttctacacgt tcttccccag cgcggcacgc cttcagctcg acacaaacct      2820
     tcccctctta gtcgacagtg tttttggttg gattgtcgtt ggatcggctg gcgcaacatc      2880
     tcctgttcaa tmttcgtctg ctgtatgtga agcggtcact gtatcaatgg tttcgctcga      2940
     ggacagtttg gaacgatttt ggaaaacaga ggagctgaca acaacggaca attattctgt      3000
     cgaagaacgt cgttgtgaaa ccctgtactc ttcaacagtt tcccgcaatt ctgaaggccg      3060
     atatgttgtt cgttatcccc gaaagactgg cttcgatgaa ataattggtg agtcccagaa      3120
     aaacgctctt cgaagatttg gatttttgga gcgacgccta gaacgacacc cgcaattgaa      3180
     agatgaatac caccagttta tgagagagta tctctccctc ggccacatgc ggttggtcga      3240
     tgcggacgac gaagaacgct ctcgaacata ctacctgccc caccacgccg taatcaagga      3300
     ggcaagtacg acaaccaagg tccgtgttgt atttgatggt tctgcaaaaa cctccaccgg      3360
     cttctcccta aatgaagctc tatgcgtggg tcccgtggtg caggacgagc ttattgacat      3420
     cattctgcga tttcgtacct ttcccgttgc tctcgtggga gacatagcca agatgtaccg      3480
     gcaagtactg attcatcccg acgacactcc tcttcagcgt atcctgtggc gtttcacgca      3540
     gctatctccg gtgcagacgt acgaacttct caccgtcaca tatgggctag cgccttcctc      3600
     ctttcttgcg actcgtacgc ttaaacaact tgctgatgat gagggtgaac cattcgccaa      3660
     aggagctcca gcattgaaga aaggctttta tgtggacgat tttatcggtg gagctcaatc      3720
     cgtcaaagaa gcgatcctct tacgtgacga actcagcgaa ctgttgaaga aaggtggatt      3780
     tgaactacgc aaatggacct ccaatcggct cgaagtattg caaggcctca acgatgagca      3840
     aatcggaacg aaatcctctc tcgagttcaa accccatgaa acgataaagg cgttaggaat      3900
     caactgggaa cctgaagctg atgttctacg atttgactcc caaatccggg acgataatgc      3960
     accaccaacg aaacgatcga ttctgtccga catagcgaag ctgttcgatc ctcttgggct      4020
     catatctccc gtacacactt aaattatttc accgacctca gtaaaacttt tcgccgagaa      4080
     cccaacagct gagagttcgg taattttcaa tgccgaatct cggtacttat tttaccgaaa      4140
     tctcggcaat ccaatttttt gccgagacgt aactttaccg agatctcggt aaatttttta      4200
     ccgagaatcg tcgaattatt accgagatat cagctgttgg gttctcggcg aatccgttta      4260
     agtgtgtagt tgttcgagcg aaaatcctca tgcaggagct gtggcttctg tcctgcgatt      4320
     gggatgagcc tgtaccggaa cctgtaaaat cgaaatggga aaactatcat caagagcttt      4380
     caacgatctc cgagcaccgt gtcgaccgtt acgcctttct acccgattct aaaatccagc      4440
     tacacacctt tgctgatgcg tctcagaatg cgtacggtgc gtgtacatat gcccgctgtg      4500
     aagataatca aggtaggatt cgaatccagc ttctagcgtc gaaatcccgt gttgctccgt      4560
     taaaacggat cactatcgcc agattggaac tctgtgcagc agtggtggct gctcacctac      4620
     acgaccgaat aaaaaaggca actgacatcg agatctccgc atcctacttc tggtcggatt      4680
     cctcagtcac ccttcaatgg cttcgctcgc ctccaaacac ctggccaact ttcgtagcca      4740
     accgcgtttc ggaagtccaa cagtacacgc atggctgcca gtggaagcac gtctccggaa      4800
     tcgaaaatcc cgccgacctg gtctcacgcg gcatgtcagt ggaggaattc atctcgagta      4860
     aactatggca tcatggacca aactggctag cacgacctgc acaagattgg ccggtttcaa      4920
     tccctcctgg agttccagcc gaagagctgg aaatgaaatc taccgttgct gctgtccaag      4980
     tatcttcatc agttcatccg atcttccttc gttggtcctc atacaaccgt ttgctccacg      5040
     tcgtcgggta catcatacga tttgtcagca acactcgttc gaaaacccgc acaaatccat      5100
     catctagagc tagccctgtt ccagagtgtc taacggttaa cgaaattgcc aatgccaaaa      5160
     cgattctcac acgcctagcc caggaggatg gatactcacc tgaattaaaa gaaataagaa      5220
     aggtgaaaaa ggtatcaaaa caatcgccta ttcgcaacat gagcccattc attgatccgg      5280
     agggggtgtt gagagttgga ggtcgcctta actttgccct actgccctac caagcgaaac      5340
     accctgccct gttgccaaca acgcatccat ttacgcgtct aattgttgag catttccacc      5400
     gtaagttgat ccacggcggc gggcgtcaac tgttgactgc cattcgggaa gaattctggc      5460
     ctccacgggg tcgaaaattg gtccaaagtg tcgttaggaa ctgttttcga tgcgttcgtc      5520
     tcaatcctgt tcctgcccaa cagcaaatcg gtcagcttcc agcccagcga gtcattccaa      5580
     gtcgcccctt cagtgttact ggcattgact atgctggccc gctttatctc cgcccgattc      5640
     ataaacgtgc ctcacctgcc aaagcatacc tgtgcctgtt cgtatgcttt tcgaccaaag      5700
     ccgtgcatct cgagttagta ggcgatttat caactcaagc gttcctatgc tcgctacgtc      5760
     gcttcatttc acggcgaggt cgacccgcgc atatccactc agataacggg aagaactttg      5820
     agggagcgaa aaatgagttg gctgagcttt ttgctagatt tcaggatcag tcccaacata      5880
     atgaaatcgc caccttttgc tccgatgagg gaatcacctg gcatttgacc ccacccaaag      5940
     ctcctcactt tggcggccta tgggaagcgg ccgttaaggt agctaaaaaa catctcttcc      6000
     gtcaattggg atcttcacgg ttgtccttcg aggatatgtg cactgttttg acgcaaatcg      6060
     aagcaatcat gaacagccga ccgttgcttc ctatgaccga ggacccaaat gacttggcgg      6120
     cgctgacccc ggcacacttc ctaatcggat cttctctaac tgccttgccc gaccccgaca      6180
     tccacagcat acccaccagc agactccagc attatcagca gttacaacag catgtgcaac      6240
     gattttggat acactggcgg caggaatatt tgcaggagct actgaaagac acccgcgggt      6300
     ggaaacgcaa tgagcaaatt gttccagggc ggctggtcat ccttgtcgat gaaatgcaag      6360
     ctgcgattcg gtggccacta gcccgcatcg aatcagttct accgggaaag gaccaactag      6420
     ctcgagttgt tttgcttcgt acaagccggg gcatcatcac gcgtccaatt acaaaaattt      6480
     gcctgctgcc gtgctcctcg gtgttccaga atgcagaaga tgttccaagt ccatccagca      6540
     acagcaagta gatgtgttta tcgtcgagtt tctgtttaat ttaagctgag aacaacgaaa      6600
     gtgttagaat taagatgcaa aatatccatg taatgatagt tgtagttacc atgttgtttg      6660
     tttacctttt ctatgttgaa cactgtagtt caaggcggcg ggta                       6704
//
ID   BEL-592_AA-LTR repbase;    DNA;    INV; 512 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-592_AA_;
KW   Pao_Bel_Ele30; BEL-592_AA-I; BEL-592_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-512
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 512 BP; 142 A; 107 C; 125 G; 138 T; 0 other;
     tgttggttca ttatcaaatc tggcggcact gtgtgagaat catcatctca ctcagttgat        60
     ggtgctatcg gtccgtggtt ttagacgtgc ttgtctggtt attctggcaa cacagttaac       120
     ccaccgatga tgacgatagc taaccagcat actcagatca gccaccccac ccagttagag       180
     ttaaagcgtt gatcagagaa cacctgctaa ttccaataag aatcttggcc ggagaataaa       240
     tttaaggaac tataaagttg agtctacttg tgaagtgtcc aataaaatta caagtcgcat       300
     gtatctagag cggtgttata cgtagctgaa gagtgaagaa agtgtcttct aaaggatagc       360
     cgattcgtcc ccgtcgtgct atcgtgttgc tgctgcctgt gaacgttaag atcgagaaat       420
     agggtgctgt cgcctagttt ggacccttgc caaccgacga attttggtgt aaattggaaa       480
     gcacaacgta gggtaactgg cgagcgccaa ca                                     512
//
ID   BEL-593_AA-I repbase;    DNA;    INV; 6814 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-593_AA_;
KW   BEL-593_AA-LTR; Pao_Bel_Ele54; BEL-593_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6814
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2674-3324] - Reverse transcriptase
CC   Positions [5785-6363] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1477..6732
FT                 /product="BEL-593_AA-I_1p"
FT                 /translation="MLTRTTRSGDSLKALNSKLKGLKASLNNISQFVKNFK
FT                 ETTTASQVNVRLDRLDLLWQQISETVWEIQAHDDYEEQEGFEKEQLWYENC
FT                 FYDAKSFLTEKAQEFRDESASNHSSRSAGGSHSSMERVRLPQIKLQTFDGN
FT                 IDDWLSFRDLYTSLIHQKPDLPEVEKFHYLKGCLAGEAKALVDPLKITGDN
FT                 YKIAWELLLKRFNNSKLLKRKQVQALVKLPTLTRESVTDLHQPVDGFDRAI
FT                 QTLDQVIEPAEYKDLLLVELLSSRLDPVTRRGWEEHTSAKEQDTLKDLQDF
FT                 LQRRIQILESLPAKPASRNEQQPLKRNTSSSKVSHNAVQWNNAKCPSCAEI
FT                 HGLHTCPAFLKMSLTSREAFLRAQSLCRNCLKRGHLARECSSKFSCRNCKA
FT                 RHHTLLCFKGERKDSGNQQSEKENSRKNNDDTASGSKAANASSVETASSNS
FT                 AQRSASQVLLATAVVVVEDNQGSRYSARALLDSGSECNFISEGLSQLMKVS
FT                 SQKVDIAISGIAQTGTRVTRKIQAVVKSRNSIYSQPMDFLVLPKVTACLPT
FT                 STVQVDGWNIPADVELADPEFFRSRRVDLVLGIQAFFSFFPTGRKITLGSG
FT                 LPALTESVFGWIVTGEVAKSGHSAKYTCNLSVSGKLEELMARFWSCEEVGA
FT                 VSKLSPDETRCEEQFERTFQRNSDGRYVVTLPKNNEVLAELGESRDIALRR
FT                 LRSVERRLARDPDLQRQYYDFMAEYLELGHMKKVEVSEEETVKRCYLPHHP
FT                 VIKESSTTTKVRVVFDASCKTSSGISLNDALYAGPVVQQDLRSIVLRSRIR
FT                 QVMVVADVEKMFRQIWTNTSDTPLQCVMWFEPDGSVVTYELLTVTYGTKSA
FT                 PYLATRTLKQLADDERERFPLAVSAVQEDVYMDDVISGADDVDSAVELRRQ
FT                 IDAMTSSGGFKLRKWASNSPTVLEGIPKENLALPDGINWDQDAEVKTLGLT
FT                 WLPNVDCFKFAFSLPQITDDQILTKRQVLCYIAQLFDPLGLLGATITAAKI
FT                 FMQRLWAMKNEANQSLQWDDPLPVTVGEEWRTFHKQIPVLNEIRIQRCVVV
FT                 PEAVSIEFHCFSDASILAYGTTIYVRSERQDGTVSVHLLTSKSKVAPLKVQ
FT                 SLPRLELCGALLAAQLWEKVAESLKAKGSVWFWTDSTCVLQWIRSPPGTWT
FT                 TFVANRVAKIQALTEGSEWNHVPGLSNPADLISRGIAPKDIVENRRWWHGP
FT                 DWLMEAPEEWPKGVGYSPEEDLERRRNMLICASSEEKEFISDYVARFSSLS
FT                 KLIRTTAFALRFLGNLRCSKDQKRTGFLTTEELEEAERVIIRKIQEGSFVE
FT                 ELKNLSSGSVVGRKSPLRWFHPRIDGNGILRVGGRLEHSDETFQVKHPMVL
FT                 PARHPFTELLFRYYHDKHLHAGPQLLLGTVRQRYWPLGGRNIARKVVRQCL
FT                 RCFRIKPSAIQQQMGELPAARVTVSRPFSKTGVDYFGPVYLRAGRGRQPTK
FT                 AYVAIFVCMATKAVHMELVSDLSTERFLQALRRFIARRGRCSDIFSDNGTN
FT                 FVGASNQLRELAKLLKEKEHREKVSKECANEGIYWHFNPPNAPHFGGLWEA
FT                 AVRSAKFHLLRVLGGNPVTHEDFVTLLAQVEACMNSRPLTALSNDPQDLEA
FT                 LTPAHFLTGGSLLAMHDANLGDVQINRLSRWQLVQRQLQDFWKRWRKEYLS
FT                 QLQGRMKNWQPAVKMQIGQLVVVVDANQPATQWKMGRIQELHPGDDGVTRV
FT                 VTVRTSTGVLKRPVARLCLLPLKRSEDTSDRV"
XX
SQ   Sequence 6814 BP; 1736 A; 1617 C; 1809 G; 1652 T; 0 other;
     taagttggtc cttcgagccg gatcctctac accctgtgga ccacggatat cgaacgattt        60
     gaatatcggt ttgcgccatt gcgctaagca acgacctaca caaaggtcat aaggaagcca       120
     tcgcaatctg gagacctcgt ctaaaggatt ctcgccattt cgtgattgaa tcaaatgatc       180
     ctgtcgccat cgccgaggta gtgaaaggat cgcctttgcc gccaaataca ttcgccatca       240
     tcgtctaacg aaatcaccgc cgagtgagaa gttttcgcca tcgcgcatca gcatcgagtt       300
     acattaccat cagcagcacc atcgcaacag ctatcaaata acgccttgga taatcggaag       360
     gattgtagga caaccagagc gttgttctac taccggtcag gtaggttaga acgagtatat       420
     gtccaccgaa gcgtttggtt ttcgccacta acacccaccc tacgatttct gtgctttgct       480
     ggtgaaccaa atcgtcgatc gctgacggca tcggagtggt gtatcagctc atggagagct       540
     tgatttcggg caccttccct gccggtcgaa gcttatccag cctctgagag gacatcctgt       600
     ggtcgtccag cgaccacgaa ggcgatttga gcaactacac gaccagacga agacgacaac       660
     tgcaacgttc ggacttgggc atcgctcgac ggtcatcgtg gccaggtaaa tgcaatttta       720
     cagtatatgc ccagccgaag ctggactcct tttgattcta cactgaataa attattcgtt       780
     ggtgcacaat ttggactgcc tgagctcaaa ctcattcaac aaacgcaagc cctggggttt       840
     tggtttcaat ttgctgtctt ttcgatccgc gcgacgttcg gcgacatcta aagttctcca       900
     ggtgagacat aagtatatgc cctgccgaag caggcatttt tgcgatacta catttgcaat       960
     ttcctccatc gctgcattgg actgatcaat ctactcgttg gctaccgtac cttgatgcga      1020
     cgttgagacc tggttgctga aaatattgaa acgttaagtg atttgaactt ggctgttggt      1080
     gcagtctgtc gttttacagg taaagcgaac atgtatatgt tcagccgaag ctcaaattta      1140
     gattattaca cctggctttc catttcctcg ctattcactg gctccaattc aacttgaggc      1200
     tgattgaaca accgattgga accgagtctg ccgattgaga gactgcgcgt atttggattt      1260
     atcactttgg cttcggtggt accactgttt cttctcctgg gtgagtttga acagtatatg      1320
     ttcagccgga gtagataatt tgcatactac atcgccgatt atcttcaatt ctcggatttc      1380
     caacgttcat catcactgtg acgggagtga cgctgctcaa gtgccgactt ttcattggtt      1440
     catcggtttt gtgaccagat tccaccatcc gctacgatgt taacgagaac cacaaggtcg      1500
     ggcgattccc tgaaggctct gaattctaaa cttaagggtc ttaaggcatc gttaaacaac      1560
     attagccagt ttgtaaagaa ttttaaggaa actactacag ctagtcaggt caatgtacgc      1620
     ctcgatcgat tagatttgtt gtggcagcag attagcgaaa ctgtgtggga aattcaagcc      1680
     cacgacgatt acgaggaaca ggaagggttc gaaaaggagc agctgtggta cgagaattgc      1740
     ttctatgacg cgaaatcctt tctgacggag aaggcccagg aattccgaga tgaatctgct      1800
     tcaaatcatt cttcgcggag tgctggtggc agccacagct caatggaacg tgtacgtctg      1860
     ccacaaatca agctccagac cttcgacggg aacatcgatg attggcttag tttcagggac      1920
     ttgtacacat ccctgattca ccaaaagcct gatctaccgg aagtggaaaa gttccactac      1980
     cttaagggat gcttagcagg tgaagctaag gcgctagtgg atccgctaaa gatcactggt      2040
     gacaactaca aaattgcttg ggaattgctg ctaaagcgat tcaacaacag caagctactg      2100
     aagaggaagc aagtgcaagc actagtgaag ctgcccacgc tcaccagaga atcagtcacg      2160
     gatctccacc agccggttga tggattcgac cgtgcgattc agaccttgga tcaagtcatc      2220
     gaaccagcgg agtacaagga cttactgctg gtagagctgc tgagttctcg tctggatcca      2280
     gtcactcgac gtggctggga ggaacatacg tccgctaagg agcaagacac gctgaaagat      2340
     ttgcaggatt tccttcaacg gagaattcaa atccttgagt ccctgccagc gaagccagcg      2400
     tctaggaatg agcagcagcc actcaagcgg aacacgtctt cttcgaaggt cagtcacaat      2460
     gccgtgcagt ggaacaacgc taagtgcccc tcgtgtgcgg agattcatgg actacatacc      2520
     tgtccagcct tcttgaagat gtcgctgacg agtagagagg catttttgcg ggcacaatca      2580
     ctttgccgca actgcctcaa acgaggacat ctggctcgag aatgttcgtc caagttctcg      2640
     tgtcggaatt gtaaggctcg tcatcatacg ctgctgtgct tcaaaggtga acgcaaggac      2700
     agtggaaacc agcaatcgga gaaggaaaac tcccggaaga acaacgacga tacggcttct      2760
     ggttccaaag cagcgaatgc atcatcggtt gaaacagcat cgtcgaattc ggcacaacgt      2820
     tccgcatcgc aagttcttct ggctacagct gttgttgtgg ttgaggacaa ccagggttct      2880
     cgctattcag cacgtgcact tctggattcc ggatcggaat gcaacttcat ctctgaaggt      2940
     ttgagccagc tgatgaaggt ttctagccag aaggtggaca tcgcaatatc gggtatcgca      3000
     cagactggaa caagagtcac gcgaaagata caagctgtcg tgaagtctcg aaattccatc      3060
     tatagtcaac cgatggattt tctcgtgttg ccgaaggtca ccgcctgtct gccgacctct      3120
     acagtgcagg tcgacgggtg gaacattcct gctgacgtag aattggcaga ccccgaattt      3180
     ttccggtcaa gaagggtcga cttggttcta ggtatccaag ccttcttcag cttctttcca      3240
     acgggaagga agatcacgct aggaagcggc ctaccagcac taaccgagtc tgttttcggg      3300
     tggatagtga caggcgaagt cgctaaatct ggtcatagtg cgaagtacac atgcaacctg      3360
     tccgtatcag gcaagctgga agagttaatg gcacggtttt ggtcctgcga ggaagtagga      3420
     gccgtcagca agctctctcc ggacgagacg cgttgcgaag agcaattcga gcgcactttc      3480
     cagcggaatt cggatggtcg ctatgtcgtt actcttccta agaacaacga agttcttgcg      3540
     gagctaggcg aatcacgaga catcgctctg agacgtctgc gatcagtgga acggagactg      3600
     gcacgggatc cagatcttca aaggcagtat tacgacttca tggccgaata tctcgagctt      3660
     ggtcacatga agaaggtgga agtcagcgaa gaggagacgg tcaaacgatg ttatctaccg      3720
     catcatcctg taatcaagga gtcgagcact acgacaaagg tgagggtcgt cttcgatgcc      3780
     tcctgcaaga catcttccgg gatttcactc aacgatgctc tttacgctgg acctgtggta      3840
     caacaggatc tacggtcgat tgtcctccgc agtcgtatac gtcaggtgat ggtggtagcc      3900
     gacgttgaga aaatgttccg gcagatttgg acgaacacaa gcgacacacc ccttcaatgc      3960
     gttatgtggt ttgaacccga tggaagcgtc gtgacgtatg agctgctaac ggtgacctat      4020
     ggtactaaat cggcaccgta tctagctact cgtacgttga agcagttagc ggacgatgaa      4080
     cgagaacgtt ttcccttggc agtatcggca gttcaggaag acgtttacat ggacgacgtt      4140
     atttctggag cagatgacgt cgactctgca gtcgaattga ggcgacaaat cgacgcaatg      4200
     acgagcagcg gagggttcaa gctacgaaaa tgggcttcca acagtcccac tgtgctggaa      4260
     ggtattccca aggagaatct ggcactacca gacggaatca actgggacca agatgcggag      4320
     gtgaagacgt tgggactgac ttggcttccc aacgtagact gcttcaagtt cgcgttctcg      4380
     ctgccacaaa tcacggatga ccagattctg acgaagcgac aggtgctctg ttacatcgca      4440
     caattgttcg atcctctggg actactcggt gcgacgatca cagcagcaaa aatctttatg      4500
     cagcgacttt gggcaatgaa gaatgaagct aatcagagcc tgcaatggga tgacccgtta      4560
     cctgtaacgg tgggcgagga atggcggacg ttccacaagc aaattccagt cttgaacgag      4620
     attagaattc aacggtgtgt ggttgttcct gaagcggtgt ctatagagtt ccattgcttc      4680
     tcggacgcat cgattttagc ctacggtaca accatctacg ttcggagtga gcggcaggat      4740
     ggtacggtgt cagtgcacct tctgacatct aagtcgaagg tggcacctct caaagtgcaa      4800
     tctctaccac ggttggagct atgtggtgca ctcctggcgg cgcagctgtg ggaaaaggta      4860
     gcagaatcgc tgaaggcaaa aggcagcgtg tggttctgga cggattcaac gtgcgtcctt      4920
     caatggattc ggtctcctcc tggaacgtgg accaccttcg tggcgaacag ggtcgccaaa      4980
     attcaagctc taacggaagg aagcgagtgg aatcacgtac ccggactctc caatcccgca      5040
     gatctaatct cgcgaggaat cgcaccaaag gatatcgttg aaaatcgcag atggtggcac      5100
     ggtccggact ggctgatgga agcgcccgaa gaatggccga aaggggtagg atattcacca      5160
     gaagaggacc tggaaagacg acgcaatatg ctgatttgtg cttcgtctga ggaaaaggag      5220
     ttcatatcgg actacgtagc aagattttcg tcactttcga agctaattcg tacgactgcc      5280
     ttcgcgctac gcttcctggg caatttgcgg tgctccaagg atcaaaaacg gactggattt      5340
     ctcaccactg aggaattgga ggaagctgaa cgagtgatta tccgtaaaat ccaagagggg      5400
     tcgtttgtgg aagagctcaa gaacttgtcg tcgggctccg tcgtgggtcg aaagtcccca      5460
     ctaagatggt tccatcctcg catcgatgga aatggcatcc ttcgagttgg tggccgctta      5520
     gagcattcgg atgaaacttt ccaggtcaaa catcccatgg ttttgccagc caggcatcca      5580
     ttcacagagc tgttgtttcg ctactaccac gataagcatc tccacgctgg accgcaatta      5640
     cttctgggta cggttcggca gcgatattgg ccgcttggag gcagaaatat cgctcgaaag      5700
     gtagttcgtc agtgcctacg atgtttccga attaaaccat cggcaattca gcagcaaatg      5760
     ggtgagctgc cagcggctag agtgacggtg tctaggccgt tttccaagac tggcgtagat      5820
     tatttcggtc cggtgtacct acgagcagga cgcgggcgtc aaccgacgaa ggcctacgtc      5880
     gcgatcttcg tttgcatggc aacgaaggca gtgcatatgg agctggtttc ggatttatcg      5940
     accgaacggt tcctgcaagc gctgcggagg ttcattgctc gtcgaggaag gtgctccgat      6000
     attttctcgg acaacgggac gaattttgta ggcgctagca atcaattgcg ggaactggcg      6060
     aaattgctga aagaaaagga acatcgtgag aaagtgtcca aggaatgtgc gaacgaagga      6120
     atttattggc attttaaccc gccgaatgcc ccacactttg gtggattgtg ggaagcagct      6180
     gtccgttcgg cgaagtttca tcttctgcgg gttcttggtg gtaatccagt tacacacgag      6240
     gactttgtga cgttgttggc acaggtggaa gcgtgcatga attctaggcc tctaacagcg      6300
     ctttctaatg atcctcaaga tttggaggct ctgacgccgg cacacttcct tacaggagga      6360
     tcgcttctcg cgatgcacga tgctaatttg ggagacgtcc agataaatcg actttccagg      6420
     tggcagttgg tccagcggca gctgcaagac ttttggaaac gatggcggaa ggagtatttg      6480
     tcgcagcttc agggccgaat gaaaaattgg cagccagcag ttaaaatgca gatcggccag      6540
     ctcgttgttg ttgtcgatgc aaatcagcca gccacacaat ggaagatggg tcgcattcaa      6600
     gagcttcatc ccggcgatga tggagtaact cgagtggtta cagtacgaac atcgactggg      6660
     gtactcaaac gtcctgtggc aagattgtgt ttgttaccct tgaaacgttc ggaagacacc      6720
     tcagatagag tttgatgcca gtagtccagt gcaccgcgag gattttattt atttactttc      6780
     agaagtttcc cggcaacttc agggtgggcg agaa                                  6814
//
ID   BEL-593_AA-LTR repbase;    DNA;    INV; 579 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-593_AA_;
KW   Pao_Bel_Ele54; BEL-593_AA-I; BEL-593_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-579
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 579 BP; 154 A; 104 C; 173 G; 148 T; 0 other;
     tgtctacgag cgacataagc ggcacggagt gatccagcca ctctgcctgg ttcaggtact        60
     ccaccggcta ccaagcggat tgagtgccgt agctggtgat ggtgaaccgg ttcaatgggg       120
     agctcaccac tacggtagca tctacggaga gggagagagg ttcgcttggc catggcggag       180
     atggttgaaa gcgaaagtga tcgccatgta tatagtgaaa tgtaggtcag tagggcaggt       240
     cagtgtcgaa accaaccact gtcgcgatcg gtcgaccggg ggcgaacccc gtaacatagc       300
     ttgttgtaga ttttgttcaa tgtctagttt aataagttta aataaatgtt tagtactgta       360
     aaattgtata gtgtagttga ataaagctaa tgtagtgtat ttaatgtaaa gcaatgtgtt       420
     aaataaacgg tagtttgtga ctattgcttg tggtgtgctg catgttattt ctgaacggat       480
     tggtcgttgg atgacgggtg ccaggaaagg acaacccaac caaggaagtg ggttcatcgt       540
     agtagagaga accgagagcg gtcagggcgg tccctgaca                              579
//
ID   BEL-594_AA-I repbase;    DNA;    INV; 6427 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-594_AA_;
KW   BEL-594_AA-LTR; Pao_Bel_Ele204; BEL-594_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6427
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5466-6035] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..3718
FT                 /product="BEL-594_AA-I_1p"
FT                 /translation="MPRSQHIPHEASADAQCIACRKPNSAEAKMVQCDGCH
FT                 RWYHFSCAGVGDSIEAEDRSYQCALCRPRSSRAPLSEKSTASTSASAIEAR
FT                 LQLEMQHLVEEKELQAKLMAEKAKQDREMQEKALQLETERRAKMMDDLMKL
FT                 EKEFLDRKFQLLHAQLDEGAKTSSRASVHSGVSAAGSADKVRSWIDNHQVI
FT                 LRANSGKDISTGLTSQAGGHVVATRSTLVDGAVAPVAAVSSHEIRSSQAVT
FT                 QPGVFSNSFDDVISPIATVYQGGFTNTANPVPPVLQSTPRTESITLSSIPA
FT                 VHPTVSWQTDIHPSSCAVSQPAPVIGSTVGGSSMLPRVPAPVSSFGRYDQS
FT                 QYVRRTWMDPHVGQHNPYVLPSSTVVSTTSAEVIAGKIGEPITQNCVQPSH
FT                 VFPSTLGQLGYSQISRNEANMPPDSGNYFLSRNQPVDLNPIVSQNAPFPVY
FT                 HMQSEPMSSGGESRPPLRPPVVSVSSYQTPIPAVQNPQLQYGGFQPSYGPN
FT                 AQQLAARHVVPKDLPCFSGDPTEWPMFWSSYQTSTQICGYNDSENLMRLQR
FT                 CLKGDARKAVSSFLLHPANVPEIINTLRILYGRPEAVISSLLAEVRATPTP
FT                 RPEKLGTIISFGLAVRNFCTHLVSTGQQVHLANPILIEELVEKLPANIKLD
FT                 WAIHKQRVQNVDLRTFADYMNVIVTAASSVTPTIVKHEKPKGKAEIHTVNI
FT                 QNEKPEPSSQTRTERPCMVCQKPGHKPKDCSSFKSKTLEDKWKVAQEVSLC
FT                 RRCLYPHGKWPCKASNCGVNGCQQRHHRLLHPGDPRETRPEGSSQVSGVIS
FT                 VHRQQQEILFRIIPVILHANGRSVQTFAFLDGGSDTTLLERSLAEQLGVQG
FT                 PTSPLCMKWTNGVERVEEESQKIQLDISGLSTDRKFTIRRVQTIEGLELPR
FT                 QSVNFEELRSKYPHLRGLPVQSYNDAVPGILIGLDNTRLKTTLKLREGREH
FT                 EPVVAKTRLGWVLYGRSGNDVGSSSQRVLHICTKSRDDELHGLVKSFFSME
FT                 SVGISVTQAKESADDKRAQEILQATTNRTDTGRFETGLLWRFDNVEFPNSR
FT                 PMAERRLKCLERRLLKSPALYANVRQQIASYVSKGYAHKATPRELETMDAK
FT                 RTWFLPLGVVVNPKKPEKVRVVRDAAASVEGVSLNSVLLKGPDLPTSLQAV
FT                 LCRCRQKAIAISGDIMEMFHQVLIRVQDRQLSGSCGEKVHPILFKYTSWTL
FT                 QHSGRRVRQVQPNM"
FT   CDS           4968..6395
FT                 /product="BEL-594_AA-I_2p"
FT                 /translation="MRRNGSKDGKATLGSAEWKRAESAVFKLIQANEYPEE
FT                 CSILHRNLTLQPDERERLQKSSRVFKLSPFLDLAGVMRMGSRIANAECVSD
FT                 ESKFPVILPKDHYVTQLVIDWYHRKYRHANNETVVNEIRQKFHVSDLRTAV
FT                 KKVANGCNWCRVYKCKPQVPPMAPLPSARLTPYVRAFTFTGLDYFGPINVR
FT                 FGRGSVKRWVALFTCLGTRAVHLEIAYSLSSESCKMAIRRFIARRGAPQEI
FT                 YSDQGTNFQGASAELRQQIEAVNRGLAETFTNAETQWKHDPPYAPHMGGVW
FT                 ERLVRSVKSGLAYMELPRIPEEETFITALAEVESTVNSRPLTYLPLESEES
FT                 TALTPNHFLLLSSSGVVQPSVRPTEEGAALRSNWKLAQVMLDRFWMRWIRE
FT                 YLPVIARQPKWFGEVKAINVGDLVIVVNEGVRNSWIRGRIIRVYPGRDGRV
FT                 RSADVQTSFGIMRRPATKLAVLDVAREAGTA"
XX
SQ   Sequence 6427 BP; 1715 A; 1542 C; 1753 G; 1417 T; 0 other;
     atctttaaga ttgatttact gagatcgctt gcaatctcgt agaaacatgc cgaggtctca        60
     acacatccct catgaagcat ctgctgatgc tcagtgcatt gcatgtagga aaccaaattc       120
     ggccgaagcc aagatggtcc agtgtgatgg atgccaccga tggtaccact tttcgtgcgc       180
     cggcgtcggc gatagcattg aagcagaaga tcgtagctat cagtgcgcgc tttgccgacc       240
     gaggagttct cgagcgccgt tatcggaaaa atccacagca tcgaccagtg caagtgcaat       300
     tgaggcaagg ttgcaactgg aaatgcagca tctggttgaa gaaaaggaac tacaagccaa       360
     gttgatggct gaaaaggcta aacaggatcg ggaaatgcag gagaaggctc tgcagctgga       420
     aaccgaaagg agggcaaaaa tgatggacga tctgatgaaa ctggaaaagg agtttttgga       480
     ccgtaagttc cagttacttc acgcccagct ggatgagggc gcgaagacga gctcgagagc       540
     gagtgtacac agcggggtca gcgcagccgg aagtgccgat aaagttcgga gctggatcga       600
     caaccaccaa gtgatcctga gggccaattc tggaaaagat atttccactg gactcacatc       660
     acaggccggt ggccacgtcg tggcaacgag atcgacactg gtagatggcg cagtagctcc       720
     agtcgcagca gttagcagcc acgaaatcag atccagtcag gcagtgaccc aaccaggtgt       780
     gttttcaaac tcgttcgacg acgtcatctc gcctatagcg accgtatacc aaggaggttt       840
     caccaatacc gccaatccag ttccaccagt tctacaatca acgccgcgga cggaatccat       900
     aacgctgtcg agtattccag ccgtgcaccc cactgtatcg tggcagaccg atattcatcc       960
     gagttcgtgt gcagttagcc agccggctcc ggttattggt tcaactgtcg gcggcagttc      1020
     gatgcttcct cgggtcccgg caccggtatc gtcatttggg agatacgatc aatcacaata      1080
     cgtcaggcgc acgtggatgg atcctcatgt tgggcagcat aatccgtatg tactacctag      1140
     ttcgactgtg gtgagtacta caagtgcaga agtcattgca ggaaaaatcg gcgaaccaat      1200
     cacacaaaat tgtgtccaac catctcacgt tttcccctct acgctagggc agttagggta      1260
     ctctcaaata tctaggaacg aagctaacat gcctcctgat tccggtaact atttcttaag      1320
     taggaaccag cccgtagatt tgaatcccat agtgtcacag aatgctccct ttcccgttta      1380
     tcatatgcaa tccgaaccaa tgtcttcagg gggggaatct cgaccgccac ttcgtcctcc      1440
     tgtagtgagt gtgtcgagtt atcaaacacc cataccagct gttcaaaatc cgcagctgca      1500
     gtatgggggc ttccaaccat cgtacggtcc gaatgcgcag cagctggcgg cccgccatgt      1560
     ggttcccaaa gaccttccgt gcttttctgg ggacccaacg gagtggccga tgttctggag      1620
     cagctaccag acgtccacgc agatttgtgg gtacaacgat tcggagaacc tgatgcgatt      1680
     gcaacgatgc ttgaaagggg atgcgaggaa agcagtgagc agttttctcc ttcatccggc      1740
     gaacgttcct gagataatca acacgttgcg gattctatat ggacgccctg aagcggtcat      1800
     cagttctctg ctggctgaag tgcgcgcaac cccgacaccg cgaccagaaa aactgggaac      1860
     gatcatcagt ttcggcttag ctgttcggaa tttctgtacg catctagttt cgactggaca      1920
     acaggtgcat ttggctaacc cgatcttgat cgaggagcta gtagaaaaac tgccggccaa      1980
     tatcaagcta gattgggcga tacataaaca gcgagtgcag aacgtagatt tgagaacctt      2040
     tgcggactac atgaacgtga tcgtgacagc agctagtagt gtaacaccaa ctatcgtcaa      2100
     acacgagaag ccgaaaggga aagccgaaat acacacggtg aatatccaga acgagaaacc      2160
     agaaccatcc agccaaacga ggacagagcg tccttgtatg gtttgtcaga aacccggaca      2220
     caaaccaaag gattgcagta gcttcaagtc gaagaccttg gaagacaagt ggaaggtggc      2280
     ccaagaagtg agcctatgta gacgctgctt gtatccgcat ggtaaatggc cgtgcaaagc      2340
     ctcgaactgc ggagtaaatg gctgccaaca acgacatcat cggttgcttc acccaggaga      2400
     tccacgagaa acaagaccag aaggatcgtc tcaggtttcc ggcgtaatct ccgttcatcg      2460
     gcagcaacag gaaatcctat ttcgtataat tccggttatc cttcacgcca acggtcgatc      2520
     ggtacaaacc tttgccttct tggatggtgg ttccgatacc actttgttgg agcgatcttt      2580
     ggcagaacag ttgggtgtgc aaggtccaac atctccgctt tgtatgaaat ggaccaacgg      2640
     agttgagcga gtggaagagg aatcccagaa aattcagctg gatatttctg gattaagtac      2700
     ggataggaag tttactatac ggagagtaca aaccatcgaa gggctagagc ttccgcgaca      2760
     gtctgtgaat ttcgaggagt tgaggagcaa atatccgcat ctgaggggtc ttccagtgca      2820
     aagctacaac gacgcagttc caggtatcct gataggcttg gacaacacta gattgaagac      2880
     tacgttgaaa ttgcgggagg gccgagaaca cgagccggtt gtagccaaaa ctagactggg      2940
     ctgggttctt tacggccgat ctggtaacga cgttggaagc tcgtcacagc gggttctgca      3000
     tatttgcacc aaatcgcgcg acgacgaatt gcacggactg gtgaaaagtt ttttctccat      3060
     ggaaagcgtc ggcatttcgg taactcaggc gaaggaatca gcagatgaca agcgggctca      3120
     agagattctt caagcaacca cgaacaggac tgataccggc agattcgaaa ccggtctctt      3180
     gtggagattc gacaacgttg agtttcccaa tagcaggcct atggctgagc ggagactaaa      3240
     atgcttggaa cgtcgtcttc ttaaatcacc agcattatat gccaacgtta ggcagcaaat      3300
     cgcaagctat gtatctaagg gatacgcaca caaagccact cctcgagaac tggagacgat      3360
     ggatgcgaaa cgtacgtggt ttttaccctt gggtgtcgtg gtgaacccaa aaaagcccga      3420
     gaaagtcagg gtcgtccggg atgccgccgc atcggtagaa ggcgtatcgt taaactccgt      3480
     tctcctaaaa ggacctgatc tgccaacctc tctgcaagcc gtcttgtgcc gttgccgaca      3540
     gaaagcaatc gccatcagtg gcgatataat ggaaatgttc catcaagtgc ttatcagagt      3600
     gcaagatcga cagctcagtg gttcatgtgg cgagaaagtc catccgatcc tattcaagta      3660
     tacgtcatgg acgttgcaac attcgggtcg acgtgttcgt caagttcaac ccaatatgtg      3720
     aaaaacctga atgcggagga gtatgcggcg gagttcccga gggcgtccga ggcgataaag      3780
     gaaaatcact atgtggacga ctatctggac agtgtcgata cggtcgagga agcggtcagt      3840
     agcactggac gtcaaggaag tccacgagaa ggcaggattc cttattcggc actggatgtc      3900
     caactcccca gaggtgctga cacgcattgg agaacaaaac acgaagtcag tgaagagttt      3960
     tacaatggac aagggcagca acctggaacg agtcttaggg atggtgtggc gaccacaaga      4020
     ggatgtcttc gtattttcga tggctttccg agaagatctg caacgtctac tggatgattc      4080
     cgtcgtgcca accaagcgtc agctactgag cctcgtcatg agcgttttcg atccattagg      4140
     tatggttgct cctttcgtgg tacatggcaa gacgatcgtt caggaagtgt ggagatccgg      4200
     aattagctgg gacgagccac tacctgagga tatcgtacac cgatgggagc agtatgccaa      4260
     attgctcgga acgatgcata cgtgaagata cctagatgct attttcccgg atacaatcct      4320
     gaagcttacg attcgcttga actacacgtt ttcgtggatg ctagcagctc agcatatgcc      4380
     gccgtagctt atttccggat tgtggactgt ggaaaagtac gctgtagcct ggtatctgcc      4440
     agaaccaaag tagcgccgat caaattgctg tcagttccac ggttggagct gcaagccgcc      4500
     gtgatcggag cacgcctcgc aaagtctgtc atttcaaagc actctttgaa gatcaagcgc      4560
     aaaactttgt ggagtgattc ctcgacagtg ctgaactggc tacgatctga tccgcggaag      4620
     ttcaagcagt ttgtagcgtt tcggataaca gagatcctgg aggaaacaga agtcaccgaa      4680
     tggaggaaag tcccaacgaa gatgaacgta gctgatgaag ccaccaagtg gggacatggg      4740
     ccatgcttcg atgaacagag caggtggtac aagggcccag cattcctata tgagccggag      4800
     tttgattggc cagaggaagc gatcgaacca ttacagcgga agaattacga gtggttcatg      4860
     tgcaccagca actaccgacg gaaccgatca tcgagtttga acgtttttcg aagtgggaga      4920
     ggctaacccg ctcagtggca ttcgttctac gctttggttg caagaggatg cgacgaaacg      4980
     gatcgaagga cggaaaagca accctaggca gcgcggaatg gaaacgagct gagtcggctg      5040
     tgttcaagct gattcaagcg aacgagtatc cagaggaatg tagtattctt catagaaacc      5100
     ttacgttgca gccagatgaa cgtgaaagac tccagaagag cagccgagtg ttcaaattat      5160
     ctccgttttt ggacctcgcc ggagtgatga gaatgggatc ccgcatcgca aacgcggaat      5220
     gtgtttcgga cgaaagcaaa tttcccgtca tcttgcctaa agatcactat gtcacgcaac      5280
     tagtgatcga ctggtatcac aggaagtatc gacacgccaa caatgaaacg gtggtgaacg      5340
     agattcgcca gaagttccac gtttctgact tgaggacagc cgtcaagaaa gtggcaaacg      5400
     gctgtaactg gtgcagagtt tacaaatgca agccacaggt tccaccaatg gctcccttgc      5460
     cctctgctcg tctcacgccg tatgtccggg ccttcacctt tacggggctg gactacttcg      5520
     gcccgattaa tgttcgcttt ggacggggta gcgttaaacg atgggtagca ctctttacct      5580
     gtctggggac ccgagccgtg catttagaaa ttgcttatag cctatcatct gaatcgtgca      5640
     agatggcaat acgcaggttc atcgcccgcc gaggtgcgcc gcaggaaata tactcggatc      5700
     aaggtaccaa cttccagggg gctagcgcag aattgagaca acagatcgaa gcggtaaacc      5760
     gaggtctagc ggagacgttc acgaacgccg aaacccaatg gaaacacgac cctccgtacg      5820
     ccccccatat gggaggtgtg tgggaacggc tagtacgttc agtcaagtca ggtttagcgt      5880
     acatggagtt gccgaggatc ccggaagagg agacgttcat aacggccctt gcggaggttg      5940
     aatctacggt gaactcgcga cctctaactt accttccgct ggaaagtgag gaatctaccg      6000
     ccctaacgcc gaaccacttc ctattgctga gttccagcgg agtcgtccaa ccatctgtcc      6060
     ggccaactga ggagggtgcg gcgttgcggt cgaactggaa acttgctcag gttatgttgg      6120
     accgattctg gatgcgatgg atccgagaat atcttccggt tatcgctcga cagccgaagt      6180
     ggtttggaga ggttaaggcg atcaacgtcg gtgatctggt catcgtcgta aacgaaggag      6240
     tgagaaacag ctggatcaga ggaagaatca tccgggtgta tcctggacgt gatggacgag      6300
     tccgcagcgc ggatgtccag acttcttttg gtatcatgcg acgaccggcg actaagctcg      6360
     ctgtcctgga tgtagccagg gaagctggta cagcttaagg acacttgaag cagtacgggc      6420
     gggggcg                                                                6427
//
ID   BEL-594_AA-LTR repbase;    DNA;    INV; 516 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-594_AA_;
KW   Pao_Bel_Ele204; BEL-594_AA-I; BEL-594_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-516
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 516 BP; 195 A; 97 C; 86 G; 138 T; 0 other;
     tgttggcaac acggatcagc gcgttcagca ccgccctcat agagatacca cagggaagca        60
     gaccgagtga catacgaatg atgttgctct gatagggagc ttaggtagga cagctgtcat       120
     taaaaagtaa gaagtcatgc ttgcatgata gctggtagag tgcatcaatt tgttactact       180
     taaactactt acgaaaatct ataatttgtt attctaaatt aatcctaact ttgttaaatt       240
     acatgaattg tgagtatgaa atgaattcct taaactaaat atattctaaa cacaatttat       300
     aatacattta gcctaaacat aaattgcaac aaaccctact gttacaaacg acggacaaac       360
     taaagttgag gacaaatcaa tgtaagttaa cctataaaaa gaaatgtaca acatatgaac       420
     taaactaatg atacaattac agcttaaagc atactcaacc taaaactacg agtttgctct       480
     gaagacgtcc gaaactggtc cgctcacgta acaaca                                 516
//
ID   BEL-595_AA-I repbase;    DNA;    INV; 5957 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-595_AA_;
KW   BEL-595_AA-LTR; Pao_Bel_Ele34; BEL-595_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5957
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4905-5486] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..3903
FT                 /product="BEL-595_AA-I_1p"
FT                 /translation="MADERTRQQLINRRTTLIAALGRAEQFVEKYVAERDR
FT                 GQVKLRLENLDTVWMGLEDVQTQLEDTELTNQGMAQNLAFRSHNETRYFQI
FT                 KAALQSYLPIVPPSTNAIPQPSPSGLSAIKLPTISLPEFDGDYNNWLAFHD
FT                 TFVALIHSNPEVHDIQKFHYLRAALKGEAAQLVESIGISSANYPIAWQTLV
FT                 SRYANEYLLKKRHLQALLDCPRMKKESAAALHSVVDEYERHTKTLRQLGEP
FT                 VDSWSTMLEHLLCLRLDDSTLKAWEDFATTTTNPDYACLIDFLQRRIRVLE
FT                 SMSVNHQAQPTPNQQSSMFRRPPFHKTVSHAVTEATPRKCHSCDQHHPLFQ
FT                 CPRFEKMTVADRLKVVNDQHLCHNCFRQDHLARNCQSKFSCRHCKRRHHSL
FT                 LHPGYHPLDNDQSSTTSRTPTYTPKPIAKQDAAANHNTRPPTSTNNAVSAP
FT                 TTNSSQTSNANVLLSTVVLMVLDCNGQAHPARALLDSGSQSNIISERLCQL
FT                 LRLKRNKINIPVFGVGESSSSVNHSVSATIKSRNSDFEIGLDFLVMPRITI
FT                 DLPVVSSLANDWRAPKNLPLADPTFNKTGAIDMLLGAEHFFTYVNPGTRIE
FT                 DGESPALIKTVFGWIVTGRNPAPLRSPPVACHVSLSDPLHEAMERFWLLEE
FT                 VENRPNYSVEEQQCESHYASNVSRTPEGRYIVRLPRRPNFDHLLGESKSAA
FT                 LRRFHCLERRLGREPHLMEEYHNFLSEYLSLGHMRLVPPSEKEPLQVHYLP
FT                 HHAVVKEASTTTKVRVVFDGSAKTSTGYSLNDALQVGPIVQDELLTLVLRF
FT                 RKYPIALVADIAKMYRQVILHPDDAPLQRILWRFHPNDPIATYELRTVTYG
FT                 LAPSSFLATRTLQQLAADEGHAYPRGGPALKKGFYVDDYIGGAETEEEAIE
FT                 TRRELDELLAKGGFQLRKWASNNAKVLEGLDPSQIGTQPTLKLDNAEPTKA
FT                 LGVCWEPGTDQLRFDSAPVVGNGPPTKRSILSAVSKHFDPLGLTAPIVIRA
FT                 KMLLQELWLQPCGWDDEVSDSIRTKWDSYRTDLPKICSYRADRYAFLPNST
FT                 VQLHTFADASQQAYGACIYARSTDEKGSTNVQLIASKSKVAPLKRIS"
FT   CDS           4161..5609
FT                 /product="BEL-595_AA-I_2p"
FT                 /translation="MSVEEFLSSGLWHHGPAWLTAPETEWPISTQQQKTPE
FT                 EILERRRMVAAIQNKPEVNEIFDTSSCYNRLIRVTAYCLRFIHACRRQTTP
FT                 SPYPESDVITNAITVEEMSAARMKLIKLAQADVFAEDMRYLGKGKVLPKHS
FT                 SMRLLSPFVDELGILRVGGRLRLSDQPYITKHPILLPSSHPLTRLVAMHYH
FT                 MRLLHGGGRVTLAAMRHEFWPIQGRRLVNSVVRNCFRCSRASPVPAKQQTG
FT                 QLPLQRITPSRPFSVTGIDYAGPVYIRAIHKRASPTKAYISVFVCFVTKAV
FT                 HLELVSDLSTPAFLNALRRFIARRGCPAHIHSDNGKNFEGARNELRELYRM
FT                 LQQEESTNSVATHCANQGIQWHMTPPKAPHFGGLWEAAVKIAKKHLYRQLG
FT                 NANLSFEDMSTVLTQIEGAMNSRPLTPLTEDPNDLAVLTPAHFLIGTTLDA
FT                 LPDTEVSEVPINRLDHYRALQHRVQQFWHQWQAEYLQE"
XX
SQ   Sequence 5957 BP; 1488 A; 1762 C; 1350 G; 1324 T; 33 other;
     tcttggtgcc gtgaccagga tctggtttcc tcccagaaaa tccgccatcg catcacgggc        60
     ttcgacgcta tctaccgcca tcgttccgca ctattgtgtg ccccattggt attcwtcaag       120
     atcgccatct tccccggagg ctattgtgct ccatcgccat ctagaagctt ctccggagtt       180
     ccagcttgag ttttttaata caaggcctaa tacaattagg cactcggtac gtataattcc       240
     gaagttgcgc agaagtgtac cgcgggtgcc ttgagatctc cgtatttttc cgattttcat       300
     cctatccgtt ccggagtttt caccgaatat tctggaagcg tgcccagccg ttccgtgagc       360
     acggctattg tgagagtgag cgacgccatt gccatccgtg ttccgaatac cacccgtaga       420
     gctacaccgc cggataggag aaccgttgca ggtttgaatt taatacaagg cttaatccta       480
     gcctttagaa ggttagtagc gctccaaact atctactcca tttgtccggc tctaccgggt       540
     ctttctctgt gtcacccgat ctagtgtgtc cagcgataac cagtttccgt aatggcggac       600
     gaacgtacga gacagcagct catcaaccga cgtaccacac tcatcgctgc gcttggaaga       660
     gcggagcagt tcgtcgagaa gtacgtggcg gaacgggata gaggccaggt gaaactacgt       720
     ctcgagaacc tcgataccgt gtggatggga ttggaggatg tgcagaccca gctcgaggac       780
     acggaactca ccaatcaagg tatggcacag aacctagctt tccgttccca caatgaaacc       840
     cgctactttc aaataaaggc tgctcttcaa tcctatctcc ccattgtacc tccttcgaca       900
     aacgcaattc cccaaccgtc tccctctgga ttgtccgcta tcaagttgcc gactatttct       960
     ttgccggagt tcgacggaga ctataacaac tggctagcct tccatgacac gttcgtcgct      1020
     ctaatccatt ccaaccccga ggttcacgat atccaaaagt ttcattacct ccgtgctgct      1080
     ttgaaaggag aagcagcaca gctcgtcgaa tcaattggta tcagctccgc caattatccc      1140
     attgcttggc aaactcttgt gtctcgctac gctaatgagt atctactcaa aaaacgccac      1200
     ttacaagccc tcctcgattg cccccgaatg aaaaaggaat ccgccgctgc attgcattct      1260
     gtcgttgacg agtacgaacg ccataccaaa acccttcgtc aactaggtga acccgtagac      1320
     tcgtggagta ctatgttgga gcatctccta tgcctccgac tcgacgatag taccctaaaa      1380
     gcatgggaag atttcgctac gaccaccacg aaccccgact acgcttgtct gatcgacttt      1440
     cttcaacgcc gcattcgtgt actggaatct atgtccgtga atcatcaagc gcagcctact      1500
     cccaatcagc aatcatcaat gtttcggcgc cccccattcc ataaaaccgt ttcccatgct      1560
     gtaactgaag ctactccacg aaaatgccac tcatgcgatc aacatcatcc acttttccaa      1620
     tgcccacgat ttgaaaaaat gaccgttgcc gatcgtctaa aagtcgtcaa tgaccagcac      1680
     ctctgccaca attgttttcg ccaagaccac ctcgctcgca attgtcaatc aaaattctcg      1740
     tgtcgtcatt gtaaaaggcg acaccattca ttgctccatc caggctacca cccactcgat      1800
     aatgatcaat catccaccac ctctcgcaca ccaacgtaca caccgaagcc tatcgccaaa      1860
     caagatgcag cagcaaacca taacacacgt ccacccactt ccaccaataa tgctgtcagt      1920
     gctccgacga ccaattcatc gcaaacatca aacgccaatg ttttgctttc gacagtagtg      1980
     ctgatggttc tcgattgtaa tgggcaagcg catcccgctc gagctctgtt ggatagtgga      2040
     tcgcaatcca atatcattag cgaacgacta tgccagcttc tccgactaaa gcgaaacaag      2100
     ataaacatcc ctgtgttcgg tgtcggtgag tcctcctcca gcgtaaacca ctctgtcagt      2160
     gccaccatca aatcgagaaa ctccgatttt gagattggtc tcgatttcct cgtcatgccc      2220
     cgtatcacga tagatttgcc cgttgtttct tctctggcga acgactggcg tgccccgaag      2280
     aatcttccgt tggccgaccc taccttcaat aagaccggtg caatcgatat gctgctcgga      2340
     gcggagcact ttttcaccta cgtaaaccct ggtacccgaa tcgaagatgg cgaaagtccc      2400
     gccctcataa agaccgtttt tggctggatt gtcaccggta ggaacccggc ccccctcaga      2460
     tcgccccccg tagcatgcca cgtatcactt tccgatcccc tccacgaagc catggagcgc      2520
     ttttggctcc tcgaggaagt mgagaatcgt ccgaactact cggtggagga acagcagtgc      2580
     gaatcccact atgcttccaa tgtttcacgc accccagagg gaagatacat cgtccgtttg      2640
     cctcgccgtc ccaatttcga ccatttgctc ggcgaatcga agtccgctgc ccttcgacgc      2700
     ttccactgcc tggagagacg tctcggcagg gagccccacc tgatggaaga gtaccacaat      2760
     ttcctttccg agtacctgtc actcggccac atgcggctcg tcccaccgag cgaaaaggaa      2820
     ccactgcagg tgcactattt gccccaccat gccgtagtga aagaggccag caccaccaca      2880
     aaggtacgtg tggtctttga tggatcggca aaaacgtcca ccggatattc cctcaacgat      2940
     gccctccaag ttggtccaat tgtccaggat gagcttttga ccctagtact ccgattccgg      3000
     aagtatccga ttgctctggt agcggacatc gcaaaaatgt accgccaggt gatactccac      3060
     ccagacgatg ccccactgca gcggattctc tggcgtttcc acccgaacga ccccatcgcc      3120
     acatatgagt tgcgaacggt tacctacgga ttggcccctt cgtccttcct tgccaccaga      3180
     accttgcagc agctcgctgc ggacgaggga cacgcctacc cgcgaggagg ccctgcgctc      3240
     aagaagggat tctacgttga cgactatatt gggggagcgg aaacggagga agaggcaatc      3300
     gaaacacgaa gggagcttga cgagcttctg gccaaaggtg gattccaact aagaaagtgg      3360
     gcatccaaca acgcaaaggt actggaagga ctcgacccat cgcaaatcgg aacacagcca      3420
     acactgaaat tggacaacgc cgaacccacc aaggcactcg gggtgtgttg ggagcctgga      3480
     actgaccaac tacgatttga ctcggcccca gttgtaggaa acggcccgcc aacgaagcgc      3540
     tcaatactct ctgccgtttc gaagcacttc gatccgcttg gcctgaccgc tcctatcgtc      3600
     atacgagcaa aaatgctgct gcaggagctc tggctgcagc cctgcgggtg ggacgatgag      3660
     gtttccgact ccattcgaac caagtgggac agctatcgca ccgatctgcc gaagatctgc      3720
     tcctaccgtg ctgaccgata tgcattcctg ccaaattcca ccgtccagct gcacacattc      3780
     gcggatgcat cccagcaagc atacggagct tgcatctatg cccgttccac agacgagaaa      3840
     ggctcaacta acgtccagct gatcgcatca aaatctaagg tggcccccct caagcgaatt      3900
     tctmtccccc gattggagct gtccgctgcc gtcctcgctg ctcgcctgca ccaaagggtt      3960
     tcccaagcmc tsgacatgmc atckccgctt ctcatttttg gtccgattck acmgtcacac      4020
     tcgagtggct tcgatctcct ccctacacct ggaccacctt cgtcgccaac agggtctccg      4080
     aaatccaaac aacaacacag ggatcctatt ggcatcatat cgcagggaaa cagaatccag      4140
     cggacctaat cacaagaggg atgagcgtcg aagagttcct ttctagtggt ttgtggcacc      4200
     atggaccagc ctggctaaca gcacctgaaa cggagtggcc aattagtacc caacagcaga      4260
     aaacacctga agaaattcta gagcgacgta gaatggtggc ggctatccaa aacaaacccg      4320
     aagtgaatga gatttttgac acttcttcgt gctataatag attgatacga gtgacagcat      4380
     attgtctacg cttcatccat gcttgtcgtc gtcaaactac cccgtcaccc tatcccgagt      4440
     cagatgtgat aacaaatgcg atcaccgtag aggaaatgtc agcagcgaga atgaaactta      4500
     taaagctagc ccaagcagac gtttttgcag aggacatgag gtacttgggg aaggggaagg      4560
     tattacccaa gcattcgagc atgcgccttt tgagcccatt cgtcgatgag ttggggatcc      4620
     ttagagtcgg gggcagattg cgtctgtcag accagcccta catcaccaaa caccccatcc      4680
     tccttccaag ttcccatcca ctaacacggt tagttgccat gcactaccac atgagactac      4740
     tgcacggtgg cggccgtgta accctagcgg ccatgcgaca cgaattctgg cccatacagg      4800
     gtagacgttt ggtcaacagc gtcgtgcgaa actgcttccg ctgttctcga gcctcgcccg      4860
     ttcccgccaa gcaacaaact ggacaactac ctctgcagag aattacacca agccgaccgt      4920
     tctccgtcac cggaattgat tacgccggcc cggtatacat cagggcgatc cacaagcgcg      4980
     cttcaccgac caaggcctac atcagcgtct tcgtctgctt cgtcacgaaa gcggtacact      5040
     tagagctggt aagcgacctg tccacaccag catttctcaa cgctctccga agattcatcg      5100
     ctcgtcgtgg ttgccccgca cacatacact ccgacaacgg aaagaacttc gaaggagccc      5160
     gcaatgaact gcgcgaattg taccgaatgc tacagcagga ggaatccacc aattcggtcg      5220
     ccacacactg cgccaaccag ggcatccagt ggcacatgac tcctccgaaa gccccacatt      5280
     tcggtgggtt gtgggaagct gccgtcaaga tcgcgaaaaa acacttgtat cggcagctgg      5340
     gtaatgcaaa cctttccttt gaggacatgt cgactgttct aacgcagata gaaggtgcca      5400
     tgaactctcg cccgttgaca cckctgacsg aagacccaaa tgacctggcc gtcctcacac      5460
     cagctcattt tcttatcggt accacactgg acgccctacc cgacaccgaa gtcagcgaag      5520
     ttccaatcaa ccgactggat cactatcgag ctctgcagca ccgagttcaa caattctggc      5580
     accagtggca ggcsgaatat ttgcaagagm tgcaaaaaga aagcaaamkc atcgccccga      5640
     acacwgmgat caagcccggw aggatggtcg tcgtcgtmga tgagttcctc gctcccgtsa      5700
     agtggccgtt agcgagaatc gtcaacgcca tcsmwggacc agacgggctc atccgagtcg      5760
     tsgacctscg aaccagcaga ggaatcatcc gccgcccaat cacsaagatt tgtttgctgc      5820
     ccttcgaaga cacgaagaat gcctagaatt ataatgtcaa cagaattkkw tcaktagatt      5880
     agscwtcaat ggattgtktg ttgttgtgat aggagagctt tcgggtagtg aaattcagga      5940
     atttcaggtg gcggcga                                                     5957
//
ID   BEL-595_AA-LTR repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-595_AA_;
KW   Pao_Bel_Ele34; BEL-595_AA-I; BEL-595_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-345
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 345 BP; 111 A; 73 C; 76 G; 85 T; 0 other;
     tgacagttct caattcaatc gtggcccaaa atccaggtat gccattgcag ctgacagcaa        60
     tgctggcagt ttaatttatg gctagtgata actcgttcaa acgaaagatt tcacacaacg       120
     tagggtagaa aagggaggta gatgaaataa aattagtcag ttatatccaa accattatcg       180
     agtcaacttc aaagttcaat aaaagtaaag tgagtcgtaa agtgcttaga gattgagtga       240
     tcttgtggtg cccagttcag aagacactta ccaagtccgg tagtgtccag aaacgtccgt       300
     gtgtgagccc aattccccgc cggaaaccac gatcctgccc taaca                       345
//
ID   BEL-596_AA-I repbase;    DNA;    INV; 6816 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-596_AA_;
KW   BEL-596_AA-LTR; Pao_Bel_Ele208; BEL-596_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6816
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5977-6426] - Integrase core
CC   'TCATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..6074
FT                 /product="BEL-596_AA-I_1p"
FT                 /translation="MSRRSNVRQTRSQAKALQDQQANLHDDIERAVLSSID
FT                 NRNMAPSTERAEACDCGGCERPNNAEPMVLCRDCQCYYHYSCASVTSETVR
FT                 TKPFVCSSCVRLTRLPPARSTSGRLSTSSSRQAQIARELQRLEEERQLEEE
FT                 FHREQIEQERLLQERSRREKLERQRQFIARKYELLSQGDLEEDDASNNASD
FT                 NNRVENWIREQQVATSAVPSDAVIHGVKTPEQAPTGDRHTPSREIFPNVQS
FT                 TPLTPKETTGVEPNRMPCLAEQLALAVDIDTTGSITIGDTADDEDERGAIG
FT                 TEVRSSQRFTSISPVDVRIYSQFLKEPNIAKPITGTVPKILKNTTLFEKWR
FT                 SETENLRKCKELESERKKENEIRRKRELQLANQLKQLEIQNRDDLQVQRAR
FT                 EADLKAQLQQLERDQALIEEQKHQELTALQDELQRLRAVEQQFLKHSQQQH
FT                 TGGYIGVLKSDPIELLQGNHQQPTSDEQPERTVYEQPAQMIHEQPTSQHAA
FT                 NVSNYPAPHCTIMPPMSFINVIPNNLQNASINTSPSYPRYSFNENYSPSPI
FT                 HTPVGGRSHYNVPPIVPPHVVSGVQSQRPIPNPFVMNTAVPNIGFQSAELG
FT                 PSPQQLATRQVVSKDLPVFSGDPVDWPLFCSSYQHSTQACGYSNSENLLRL
FT                 QRSLKGRAREAVSSFLLHPSTVPQVLSTLQILFGRPEHIIHNMISKIREIP
FT                 APRADKLETLVGFGLAVQNLCGHLKAIGLEQHLSNPMLLQELVDKLPANVK
FT                 LSWALHQQLLPAVNLTEFGEYMGNIVSATSSVTCFNALPPKSSKEPRSKEK
FT                 VYVNAHTTSNEGRSEGYRNTSGEWRGSNNRAKSPDKQIAVSKMCPACGARS
FT                 HQTAACPSFKRLSIDDRWKLVKENKLCRRCLTPHTRWPCKGEVCGIDGCQK
FT                 KHHRLLHSNNSSSEVSTQNPTNATVAVHRQISSSTLFRVLPVTLYGKNGQV
FT                 NTLAFLDDGSSVTLVERSLIDGLGVNGSAESLCIHWTGGVKKQITDTNLVQ
FT                 LQISALGSNQRFKLNEVYTVEHLGLPEQSLNFNEMSARFQHLEGLPVQSYD
FT                 AAVPGVLIGLTNIHLLATLKLREGRQNEPIATKTRIGWSIYGCQRGNVEVM
FT                 PHRQLHICAKPADEDLHDYVQSFFSIESLGIAMVPQVEGADDRRARKILQE
FT                 TTIRTNSGRFQTGLLWKHDGIEFPDSRPLAEKRLRCLEKRLSKDPQLYDNV
FT                 RRQMLDFLEKGYAHKATTEELRSFDPRRTWYLPLGVVLNPRKPGKVRIIWD
FT                 AAAKVEGVSLNSMLLKGPDQLTSLLSVLFKYREREVAISGDIREMFHQLLI
FT                 QEEDRSALLFLWRNCPNSPIDIMVMNVATFGASCSPAQSLFAMNLNATENE
FT                 ADYPRAAAAIKHRHYVDDYLDSVDTEEEAAELALEVAEVHSKAGFEIRNWL
FT                 SNRTTVLDKIGEVKPGSVKCFGADKETGTERLLGMVWRPDEDFFSFSLSFR
FT                 EDLQQLIEGEIVPSKREMLKITMSIYDPLGIVAAFVIHGKVLVQEVWRAKI
FT                 DWDEKIPWEIFCRWQQWLAVLRKMNTVKVSRCYFPGYSIECYNSLDLHIFV
FT                 DASEEAYAAVAYFRVVDNGRVRCSLVSSKTKVAPIQPLSIPRLELLAAVLG
FT                 ARLRQTIEEKHSLEIRRTFFWSDSSTVIAWISSDARRYRQFVAFRVNEILN
FT                 LSSINEWRWVPTKLNVADEATKWGKGPSFDSKSRWYHGPGFLYDNEEEWPK
FT                 DCRYEVNNTVEELRPAFVCNHHVTEPAVDLERFSRWERLLRSVAYVLRFID
FT                 NRMWQHRKTSSKIGALSRDELQKAERCLWRIAQFDGFPDEVTVFKYNLRSN
FT                 SSHRRRLERNSPLIKLTPAIDEYDVLRIDGRIQEADFVDFDTRNPIILPRR
FT                 HRVTTLLLDWYHRKFQHANDETVVNQVRQRFYIPRLRVQVRLARKQCMWCR
FT                 VYNATPTIPRMGPLPKARLTPFCRPFTMVGIDYFGPYNIRSPTGRCTLKRW
FT                 VVLFTCLTIRAVPRRNCSQPIDGLLQESDSAVHRTQRCST"
XX
SQ   Sequence 6816 BP; 1970 A; 1631 C; 1693 G; 1522 T; 0 other;
     aattctcgaa gatttatcct tgaggagtca tgtccaggag gtcaaacgtt cgccaaacga        60
     gatcccaggc caaagctttg caagaccagc aagctaacct ccatgatgac attgaacgag       120
     cggtactttc atctatagat aatcgcaata tggctccatc cactgagcgc gcagaagctt       180
     gcgactgcgg tggatgtgaa cggccaaaca atgccgagcc aatggtatta tgtcgcgatt       240
     gccagtgcta ttatcactat tcgtgtgcca gtgtaacgtc tgagacggta cgtacgaaac       300
     cattcgtttg ctcttcttgt gtccggctaa ctcgtctccc cccggcacgc tccacgtctg       360
     gtcgtttgag tacgtccagt tcacgacaag cacaaatagc gcgagagcta cagcgactag       420
     aggaggaaag acaactggag gaagaattcc atcgggaaca gatagagcag gagagattgc       480
     tgcaagaaag atctagacgg gaaaagctag aacggcagcg acagttcatc gctcgaaaat       540
     acgagcttct gagccagggg gacttagaag aagatgatgc tagtaacaac gccagcgaca       600
     ataaccgagt cgagaactgg atccgcgagc agcaagtggc taccagcgct gttccttccg       660
     atgccgtgat acacggagta aagaccccag aacaggctcc aaccggggac cgccacacgc       720
     cttcgcggga aatattccca aatgtgcaat cgacaccgct aaccccaaag gaaacgaccg       780
     gtgttgaacc gaaccgtatg ccatgtttag cggaacagct tgctttggca gtcgatatcg       840
     acaccactgg cagcattact attggggata cagccgacga tgaagatgaa cgtggcgcta       900
     taggtaccga agtgagatca tcccaacgct tcacctctat atcaccagta gatgtacgga       960
     tatatagcca gttcttgaag gaacccaaca tcgccaagcc gatcactggg acagtgccaa      1020
     aaatattgaa gaacacaacg ttattcgaga agtggcgctc tgaaaccgaa aacctcagaa      1080
     agtgcaagga attggaatcg gagcgtaaga aggagaacga aatacgacga aaacgggaac      1140
     tgcagctggc gaaccaatta aagcagctag agatccagaa ccgtgacgat ttgcaagttc      1200
     aacgagcacg agaagcagat ttgaaagcac aacttcaaca actggagcgt gaccaagcac      1260
     taatcgaaga gcagaagcat caagagttga ctgcgcttca ggacgaacta cagcggctcc      1320
     gagcagtgga acagcagttt ctgaagcatt cccaacagca gcatactggt ggatatatcg      1380
     gtgtgcttaa atccgacccg atcgaactgc ttcagggaaa tcaccaacaa cctacgagcg      1440
     acgagcaacc agagcgaacg gtctacgagc aaccagcgca gatgatccac gagcagccaa      1500
     cgtcgcaaca tgcagcaaat gtaagtaact accccgcacc ccattgtacc atcatgccac      1560
     caatgagttt cataaatgta attcccaata atttacaaaa cgcatcaata aatactagcc      1620
     cctcgtatcc gcgctacagt tttaatgaaa attattcccc atcgccgatc catacccctg      1680
     tgggtggtcg aagtcattac aatgtaccac caatagttcc cccccatgtt gtgtctggtg      1740
     tacaaagcca acgtccgatt ccaaatccgt ttgtgatgaa cacagcagtg ccaaacattg      1800
     gattccagtc agctgagctt ggtccatcac cccagcagtt ggctactagg caagtagtgt      1860
     caaaagattt gcctgttttt tcgggggatc cagtggattg gccactattc tgcagcagct      1920
     atcaacactc gactcaagcg tgtggttatt ccaattcgga gaatttgctt cgtttacaac      1980
     gaagtctcaa gggtcgagct agggaagcag tcagcagctt tttgcttcat ccctctacgg      2040
     ttccacaggt gttgtctacg ttgcaaattt tgtttgggag gccagaacac atcatccaca      2100
     atatgatttc caaaatccgc gaaattccag caccaagggc ggacaaactg gaaacacttg      2160
     tgggtttcgg tcttgcagtg cagaaccttt gtggacatct caaggcgatt gggttggagc      2220
     agcacctttc aaaccctatg ctactgcaag aactcgtcga caagttgccg gccaacgtca      2280
     agcttagttg ggcacttcac caacagctat taccagcggt aaacctcact gagttcggag      2340
     aatacatggg caacatcgta tccgccacca gcagcgtgac ctgtttcaac gcacttccgc      2400
     ccaaatcatc gaaggaacct cggtccaagg agaaggtata tgtgaacgca cacacaacgt      2460
     cgaacgaagg tagaagcgaa ggctatagaa atacgtctgg cgaatggaga ggttcgaaca      2520
     atcgagccaa gtcacccgat aagcaaatcg ctgtcagcaa aatgtgtcca gcatgtggag      2580
     ctagaagtca tcaaacagcc gcatgtccgt ctttcaagag actatccatc gacgatcggt      2640
     ggaagctagt gaaggaaaat aaactatgcc gtcgctgtct aacaccgcac acacggtggc      2700
     cttgcaaggg agaagtctgc gggatagacg gttgccaaaa gaaacaccat cggctgctac      2760
     actccaacaa ttcgtcgtca gaagtatcaa ctcaaaatcc aactaatgca acagtagcag      2820
     ttcaccgtca aatcagctcg tcaacgttgt ttagagtcct tccggtaacc ctgtatggta      2880
     aaaacggtca ggtgaacaca ctggcattcc tcgatgacgg ttcgtcagtc actttggttg      2940
     aacggtcatt gattgatgga cttggagtaa acggttctgc agaatcccta tgcatccact      3000
     ggacaggagg tgtgaagaaa caaattaccg acacaaatct cgtgcagcta caaatatcag      3060
     cattgggcag taatcagcgg ttcaaactaa acgaggtcta cacagtagaa cacctcggat      3120
     taccagagca gtcgctgaat ttcaacgaga tgtctgcacg ttttcagcac ttggaaggtt      3180
     tacctgtaca gagttatgat gctgcagtac caggtgtgct aataggacta accaatattc      3240
     acttgttggc taccttgaaa cttcgagaag gtcgacaaaa tgagccgatt gcgacaaaaa      3300
     cccgtatcgg ttggtcaatc tacggatgtc agcgaggaaa tgtagaagtt atgccacacc      3360
     gacaactgca tatctgtgcg aaaccagccg acgaagatct gcatgattac gtacagagct      3420
     tcttttccat agaaagcctt ggaattgcga tggttcccca ggtcgaaggt gccgacgatc      3480
     gacgagcacg caagattctg caagaaacaa ctatacggac aaatagtggg agattccaaa      3540
     ctggtctctt atggaaacac gacgggatag agtttccgga tagccgtccg ttggcagaaa      3600
     agcggttgag gtgtctagag aaacggctgt cgaaagaccc gcaactttac gataacgttc      3660
     gacgacaaat gctggacttc ttagagaagg gctatgcaca caaagctacc acagaagagt      3720
     tgcgcagttt cgatccacgt cgaacctggt atcttcctct cggtgtagtt ctcaacccca      3780
     gaaaaccggg taaagtgagg attatctggg acgctgccgc aaaagttgaa ggcgtttcac      3840
     tcaattcgat gctgttaaaa ggaccagatc agttgacttc gcttttatcc gtgctgttca      3900
     agtatcgcga gcgggaggtg gccatttcag gagacatcag agaaatgttc caccagcttt      3960
     tgatacaaga ggaagaccgt agtgcactac tttttctatg gagaaactgc ccaaacagcc      4020
     cgatcgacat aatggtgatg aacgttgcaa catttggtgc atcgtgctcc ccagcgcaat      4080
     cgctattcgc catgaacttg aacgctactg agaacgaagc tgattatccg agagcggccg      4140
     ctgcaatcaa acatcggcac tatgtagacg actatttgga cagtgtcgac acagaggaag      4200
     aagcagcgga attagcactg gaagtagcag aggtccattc caaagccggg tttgaaataa      4260
     ggaattggct gtcaaataga acaacggtac ttgataaaat cggtgaagta aaacccggtt      4320
     ccgttaaatg tttcggtgca gacaaagaaa caggcacgga gaggcttctc gggatggttt      4380
     ggaggccaga cgaagacttc ttttcatttt cattgagctt ccgtgaagat ctgcaacagc      4440
     taatcgaagg agaaatagtt ccgagcaaga gggaaatgtt gaagattaca atgagtatct      4500
     atgatcctct gggtatcgtg gcagccttcg ttattcatgg gaaggttctt gttcaggaag      4560
     tctggagggc caaaatcgat tgggacgaaa agattccctg ggaaattttc tgccgttggc      4620
     aacagtggct tgccgtactc cgtaagatga atacggtgaa agtctctcgt tgttacttcc      4680
     cgggatacag catcgaatgt tacaactcct tagatttgca catcttcgtt gatgcaagcg      4740
     aggaagccta cgcagcagtc gcttattttc gcgtagtcga caatggtcgt gtcagatgtt      4800
     ctttggtttc ttcgaagacg aaggtagctc caatccagcc cctttcgata ccgcgcctcg      4860
     aacttttggc agcggtactt ggcgctcgtc tgcggcagac aatcgaagaa aaacattctt      4920
     tggaaatacg tcgaacattt ttctggagcg actcatccac tgttatcgcc tggataagtt      4980
     cggatgctcg gcggtatcgg caatttgtag cattccgagt caatgaaatc cttaacctat      5040
     catcgattaa cgaatggcga tgggtgccca caaaactcaa tgtggctgac gaagccacaa      5100
     agtgggggaa aggcccttcc tttgactcaa aaagccgatg gtatcatggg cctggttttc      5160
     tgtacgacaa cgaagaagaa tggccgaagg actgtcgata cgaagtcaac aatacagtgg      5220
     aagaacttcg accagccttt gtctgtaatc accacgttac cgaaccggca gttgacttag      5280
     aacgattctc tcggtgggag cgattgctgc ggagcgtagc gtacgttttg cggttcatcg      5340
     acaacagaat gtggcagcac aggaaaactt cctcaaagat aggcgcgctg tccagagatg      5400
     aactacaaaa agcagaaagg tgcttgtggc gaatagcaca attcgacggt tttccggacg      5460
     aggtgacggt gttcaaatac aatctgcggt caaattcctc gcatcgtcgg agactagaac      5520
     gaaacagccc ccttatcaag ttaactccag cgatcgacga gtacgacgtg ttgcgcatag      5580
     acgggcgtat ccaggaagct gacttcgtgg acttcgatac tagaaatcca attatcttac      5640
     ctagaagaca tcgggtgacc actctactac tggactggta tcaccgaaag ttccagcatg      5700
     caaacgatga aacggtggta aaccaagtca ggcagcgttt ctacatacca agattacgag      5760
     ttcaggtacg ccttgcgagg aaacagtgca tgtggtgccg agtttataac gctactccaa      5820
     caataccaag aatgggaccg cttccaaaag ccagattaac gccgttttgt cgcccattta      5880
     ctatggtcgg aatcgactat ttcggaccat ataatatacg atcaccaaca ggaagatgta      5940
     cgttgaagcg gtgggttgtc ttatttacct gcttgacaat cagagcagtt ccacgtagaa      6000
     attgcagcca acctatcgac ggactcctgc aagaaagcga ttcggcggtt catcggacgc      6060
     agaggtgctc cacgtgaaat cttctcggac aatggtacca atttcgttgg tgcgagcgga      6120
     gaattggcct cagaaatacg gatgatcaat agagaaatca gtagcacgtt cactgacatc      6180
     cagacacagt ggcagttcaa ccctccatcg gcaccgcaca tggggggatg ctgggaaagg      6240
     atggtgcgct ccttcaaaac tgctttagga gcccttccga ccgttcgcct gttagatgaa      6300
     gaagcgttcg ctacggtact cgtcgaggcg gaatctatga tcaattccag accattgacc      6360
     ttcatcccac tagagaccgc tgcacacgag tctttgacgc caaaccattt ccttctcctc      6420
     agttctactg gtgtacgaca acctatcaaa acccctgtag acgataaggc tgcaatacgt      6480
     aatagctgga atatgattca aaacacactt gatgaatttt ggcggcgatg ggttgaagaa      6540
     taccttccga ccttaacccg gagaacaaaa tggttcgaag acgtccagcc gatacgagag      6600
     ggtgcgctag tagtggtagt tgacgggaat gttaggaatc ggtggcaaag ggggcgagta      6660
     gtacgaacat atccgggtaa agatggcact gtacgtaggg ccgatgtgca gacatcctgc      6720
     ggcatcctac gacgaccagt cgtcaaacta gctttgatcg atgtggataa ggaaagtgac      6780
     accgaagcaa cagttctggt gacacgaagg gcggaa                                6816
//
ID   BEL-596_AA-LTR repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-596_AA_;
KW   Pao_Bel_Ele208; BEL-596_AA-I; BEL-596_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-471
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 471 BP; 159 A; 93 C; 74 G; 145 T; 0 other;
     tgttaggatt aatcatcaga atagacccct cgatcgttcg tctaacggat ggatcgcagg        60
     cagcttcaca ctaggctaag caaaacccca atacacatac aacatgcaat agagctcctc       120
     gtcattgttt gccatcatgt ccgatacaat taattatcag ctaaagtagt aaaagacaga       180
     atctgtgtcc aattgttaaa atctattttc tacaccatta gtaagaattt attgctgttt       240
     atacctagaa attgttcaac ttatactaaa tttcttctta aactaggttt ccttaagcta       300
     acttacctag aagcatattt gttcgctgaa aaatacttaa tgaggagatt aaatgtaagt       360
     acaaacgcta ttgttcggca tgcaaatgtt taataaaact atttacagct tcgagctaac       420
     tttcgagcaa aaatcgagtt tgcttcggag aatccgaata cttcagcaac a                471
//
ID   BEL-597_AA-I repbase;    DNA;    INV; 7047 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-597_AA_;
KW   BEL-597_AA-LTR; Pao_Bel_Ele56x; BEL-597_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7047
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [6010-6591] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5521..6951
FT                 /product="BEL-597_AA-I_3p"
FT                 /translation="MNNCRRPTQRNTSLFLSTQEIAAAKTLLVRLVQEESF
FT                 PEEIKSLKKRFQVPPKSSLKLLRPFIDKDGIIRVGGRLRHSLEDYTTRHPA
FT                 VLPQSHIFTRLIIESYHQQIFHGGHRATLAVIRQEFWPIHGKRAVTSVLRK
FT                 CQRCFRFDPKPIQQPMGQLPSARVRPARPFLITGVDYCGPFYLKPPHRRAA
FT                 PHKVYIAVFICFTTKAIHLELVMDLSSAGFISALRRFIGHHGCPKEMHSDN
FT                 ATNFQGAKHELHDLYKTLHSKSGQTAIGTELSQQEISWHFIPPRAPNFGGL
FT                 WEAAVRSSKTALKKEIGSHQLTHENFCTLLVQIAAALNSRPLSPLSDDPSD
FT                 IDALTPAHFLIGTSMKALPDPDLTAIPSNRLTHYQQRQQMFQRYWQRWTQE
FT                 YLTGLQQASKHVQPTPIRIGNIVVVREDNIPPLEWPLARIIEVHHGADGVI
FT                 RVVTIQTSKGTYKRPVNRICPLPIEDKTDVED"
FT   CDS           join(2953..3636,3640..5370)
FT                 /product="BEL-597_AA-I_1p"
FT                 /translation="MVEENQEEAIESSSAGSYSIGTKQGGFSSSVFLSTVV
FT                 VSIRDQHGGKQLARALLDSGSQVNVMSERLCQALKLKRRTICVPITGVGQS
FT                 ESTAKHAVSATVSSRITEFSVGLDFLVLQRVTAELPSTTVSVSHWKIPDKL
FT                 QLADPQFNVSGRIDLLLGAEHFFRFLYEREMKRVVLGPELPVLVDSVFGWI
FT                 VAGRDASLQQEKSVRCCTATAVGNLEELLERFWRVESCEQPAWSKEEQDCE
FT                 EDFKHTHSRSEDGRYIVQLPKHVGFERMMGDSKVLALDRYRKLENRLERNQ
FT                 SMKEQYHAFMKEYLEMGHMRRITEGELDADSNKADQPKAFYLPHHAVLKES
FT                 STTTKVRVVFDASAQMDSGYSLNDILLKGPVIQDDLLNLLVRFRKHEVALV
FT                 GDVEKMYRQVLQDVNDPLRLRIFFRFSKEEPINVYELLTVTYGLKPSSFLA
FT                 TRALKQLAIDEGSMDSPAKSALEEDFYVDDYIGGAASVEDAVSLREELTSL
FT                 MAKGGFPIRKWCSNRPEVLAGIPVDQLGTNLSITFDLQPDEKIKTLGITWE
FT                 PKADQLRFLFSVDDNGGEWTRRRILSAIAKLFDPLGLIAPVVVTAKIIMQE
FT                 LALLQTGWDSPVPLQLEQKWMHFHGRLSKLAEYSIPRFAFITDYVDVQLHC
FT                 FADASEFAYGACLYVRSVDPLGSVRIELLSSKSRVAPLKRLTIPRLELCAA
FT                 REAARLYRTVTMALAMDSVKSFFWSDSTVVLHWLKAPPNTWKTFIANRVST
FT                 IQTITYGHLWQHVAGKENPADLVSRGMPVEDFLKNDLWKSGPVWLKEAPAS
FT                 WLM"
XX
SQ   Sequence 7047 BP; 1783 A; 1631 C; 1856 G; 1767 T; 10 other;
     tttggtgccg tgaccaggat cggcggttga gttggaagtg tcattggccg tgaggacaat        60
     tgggtcattg ttggatggaa tttggacttt ggacggaacg gaaccatttt tgctaaagtt       120
     ttgtgagcgg aaatatttca acaattgtga agtcggtctc tctcatcgat atcaccaaac       180
     ggattcgcta gcaagactca cggtgggata cttgctgaaa atataattca aggcctaatt       240
     gagktaggcc acaggtgagt ggcgctcctt ttccttaaaa tccattgagt ggtgctaccg       300
     agattctctc tctcctttcc tgtgaggtac gcgatcgttg tatccacgtc ttgctacgac       360
     ggctgcgagg tgcttagtga agttggttcg acaatcacca cgcacggkgg ataaacaaca       420
     ttaccgttgc ggactggatc gtcgtatgcg aagtaaggcc agcgcgcgat agtgtctgsa       480
     atagatagag ccgagtttgg attgatckgt gatcgattgc tgtgcataca ttgcaacgtc       540
     ggttggattc ggttggactc gttgttggag cacgtgactg gtcggattac tagtactact       600
     agggactacg aggaacggta tacatccatg ccgttgttta catctagatc ctgaagtaca       660
     caacatacaa ggcctattgt cgacaggcct caggtgagtg cctgtccaag tatataccct       720
     tatcgttgtg gtgcttctgg ttctttttca ccctttcatg tgcttgctgg gacgttcgtc       780
     aattgagctg tcggtgtatt ggattgttta cgtctggctc gatcttggac gagattgcgc       840
     tgcgctgacc agtggtagga gcaacagaag gcaactatat ctatacctac aagcagcaaa       900
     ggtttggcaa tcacgagacg gggtaagcga atattgagca ttctttggat tcgtcatacg       960
     gggtgcgttt agtggtttac ttcaaattgc acatacattt ttgggcggtg tgaggcgaaa      1020
     ttatttgcat ttaatcaagg cctgttgtag acaggctaca ggttagtagc tgtccaacct      1080
     ttatgtactg gtttggtggt gctgcgtaag atttctttct ctttcattgg gctgttggaa      1140
     gcggtaacgg atcgatcgac ctagataagt ttgactggga tcaatcgcaa ggatcagcta      1200
     caaatactat tgggtcacgg gggccggagt ttggacgatt tcattgttta tacaaggcct      1260
     gaattggaca ggccacaggt gagtggctgt ccattgattg tacaaccata tcggcggtac      1320
     ttcctggttc tttttggttg gcctattatt ctcggtccct ggatttttcc acgtttggct      1380
     gatctgatag tgtgggtatg gctggaggat taaggcggcc cgccggcgcg gccgcgccgg      1440
     ccgccgggcg gccgcgcgcc gcacaaaata gcgcgcgcgg cggccccgcg gcgggggcaa      1500
     gacccaacgc gccgcgcccc gcctcgaggg cctttttgcg gctctgcgtc gacatgttca      1560
     gtttctggat agttataatc cagaagcgcg cgggcggcag tctaggctgg acaaattaga      1620
     ggcaacatgg gaggatttga tgagttgcgg agcaaatttg tgagctagac gcagaaggca      1680
     actggaacag gagacgaaca acgcgtacgc tgtatttgag cggcagtatt acgaaatcgg      1740
     gctgctttac tggcaaaatt ggccctgctc aacagtgcca aatttggata attccattcg      1800
     gaacaccagt gcgttgggaa tgcacacagg ggttcgcctt ccacaaattt cgttgcctga      1860
     gtttgatggg gattacaaag ggtggctctc cttcaagtca acctttgtat cgttgattca      1920
     tgattctcat gagcttagtg atgtgcagaa attccattac ttgaaatctg cattgaaagg      1980
     ggaggcagcc aaattgatcg agtcactacg atcacaacga taattacgtc attgcatggg      2040
     agaccattac gaagcgttat tccaacgaat atctgctgaa aaagcgtcac cttcaggcac      2100
     ttatggagtt tccaaagatt gagaaggaat cggcggtaag gatacacgga ttggtggacg      2160
     agttcgatca acggttgaag atcttgaagc agctgggcga gaaaacggag cattggggag      2220
     cgatgatcgt ccactggatg tgctcgaagc tggacacaca cacgttgcag ctctgggagg      2280
     accacgctgc ctccttgcgg gatccaactt ttgcatcgtt ggtggacttt ttggagaaac      2340
     gaacgagggt attggacgct gtacaatcga actgtaggcg ggcccgggcc cccgcgggcg      2400
     ggccccccgg cccccggccc cgcgggcgcc gcccgcccgc gggggccggg cccgccgcgg      2460
     ccccgcgcgc ccgcgcgcgg ccgcctaagg ccccccggcc gccgcccgcc gggggggcgc      2520
     ggggggggcc ggcgcgcggc cgcaaatcag cgcgggccgg cccgtgtagc accgaaagtt      2580
     acagtgaaac gggagcggtt cgctgtacat acgtccgtgg aaagtggaag gaatgatccc      2640
     gtatgccaat gttgcggcga tcagcattat ctggtacggt gctccaagtt tcagaatttt      2700
     gggctaaagg agaaactgga tttcgtgaat agcaaacggt tatgcagcaa ctgcttcaag      2760
     tctggtcatt gggtacgaga ttgtaattcc aaattcaact gcagaacgtg tggcaaaaag      2820
     cacaactccc tcattcatcc tggctttcaa gcaaacggtg gaggtagcag cagcggcaaa      2880
     gataatgatt tcaatagttc ggcaaacggt gcaaaaagac aggatgcagc tagatcgcat      2940
     gtcgcagcag agatggtgga ggaaaatcaa gaagaagcaa tagaaagttc ttctgctgga      3000
     tcctacagca ttggaacgaa gcagggaggt ttcagttcca gtgtattctt gtctacagtt      3060
     gtagtatcga tacgcgatca gcatggtggc aagcagctag ctcgtgccct gctggatagc      3120
     ggctcacagg tgaacgtgat gagcgagcgg ctctgtcaag cattaaaact gaagcggaga      3180
     acaatatgtg tccccataac gggagttggg cagtcggaat cgacagcgaa gcatgcagtt      3240
     agcgcaacgg ttagttctcg aataacggag ttttcggtcg gattggattt cttggttctg      3300
     caacgtgtga ctgctgagct gccctcaaca acggtatcag tttcccactg gaaaatccca      3360
     gataagcttc agctagcaga tccgcaattc aatgtcagcg gtcgcatcga tctgctgctt      3420
     ggggctgaac atttcttccg tttcttatac gagagggaga tgaagcgagt tgttttgggg      3480
     ccggaattac cagtactcgt ggattcsgta ttcggatgga tcgtagccgg cagagacgct      3540
     agtctacagc aagagaaatc ggttcgttgt tgtacggcaa ctgccgtcgg aaacctcgag      3600
     gaattactcg aaaggttttg gagagtggag agctgtgamg agcaaccggc ttggtccaag      3660
     gaagaacagg actgtgagga ggatttcaag catacgcatt caagatcgga ggatgggcga      3720
     tacattgttc agttgccaaa gcatgtcggc ttcgagcgaa tgatggggga ttcaaaggta      3780
     ttggcactgg ataggtatcg gaaattagag aaccgattag aaaggaacca gagcatgaag      3840
     gaacagtatc atgctttcat gaaggagtat ttagagatgg gacacatgag aagaattacg      3900
     gagggagaac tggatgctga ttcaaacaag gcagatcaac cgaaggcatt ctacttgccg      3960
     caccacgcgg tattgaagga atcgagcacc acaaccaagg tgcgcgtcgt ttttgatgcg      4020
     tcggcgcaaa tggatagcgg atactcactc aacgatattc ttttaaaagg acccgttatt      4080
     caggacgatc ttctgaatct actagttcga tttcgtaaac acgaagtggc gcttgtagga      4140
     gatgtggaga aaatgtacag gcaggttctt caggatgtca atgaccctct tcgtctccga      4200
     atatttttcc gcttctccaa ggaggaacca atcaatgtct acgaactgct aacggtgacg      4260
     tacgggctga aaccatcatc atttttagca acacgcgctc tcaaacagct tgctatcgac      4320
     gaaggatcca tggattctcc agcaaaaagc gctttagaag aagattttta cgtkgacgac      4380
     tatattggag gagcagctag cgttgaggat gccgtcagtc ttcgtgaaga gttaacgtcg      4440
     ttgatggcaa agggaggatt tcccatacgg aaatggtgtt ctaatcgccc cgaagtattg      4500
     gctggtatcc ccgtggatca gttgggaact aatctttcca ttacatttga tttacaaccc      4560
     gatgaaaaaa tcaaaacctt ggggattact tgggagccga aagccgatca actacggttc      4620
     ctattcagtg tggatgataa tggaggagaa tggacaagaa ggagaatttt gtcagcgata      4680
     gccaaactgt ttgatcccct tggattgatc gctcctgtag tagtgacagc aaaaattatt      4740
     atgcaggagt tggctctact tcaaaccgga tgggattctc cggtgccttt gcagttagag      4800
     cagaaatgga tgcacttcca tggccgtttg tctaaactgg ctgaatacag catccccaga      4860
     tttgcgttta twacggatta cgtcgacgta cagctacatt gtttcgccga cgcttcagaa      4920
     tttgcgtacg gagcgtgttt atacgttcgc tctgtagatc cactcggcag cgtacgcata      4980
     gagctgctct cctctaaatc tcgggttgct cctctgaaac ggctgacaat cccaagatta      5040
     gaactttgcg cagctagaga agctgcacgt ctttaccgaa cagtcaccat ggcccttgcg      5100
     atggacagcg tcaagtcatt cttctggtcg gactcaaccg ttgtcttgca ttggttgaaa      5160
     gctccgccaa atacgtggaa aacctttatc gcaaatcgcg tttccaccat tcaaactatt      5220
     acgtacgggc atctatggca acacgtagcg ggaaaagaga accccgctga tcttgtttct      5280
     cggggaatgc ctgttgagga tttcctaaag aatgatctat ggaaaagtgg acctgtctgg      5340
     ttgaaggagg cacctgcttc atggctgatg sagtactctg aatctcttcc acctgaagtg      5400
     gatttggaac ctcgtatcgt cgttcaagct aacactgcat cactggagcc aaacttcatc      5460
     ttttccctac gatcttcgct acttcckctc gtcagagtag tggctcgctg cttgcgattt      5520
     atgaacaact gccggcgtcc gacacaacga aatacctcat tatttctttc aacacaagaa      5580
     atcgctgccg caaaaactct tctagtgcgt ttggttcaag aagagtcgtt cccagaagaa      5640
     attaaatcgt tgaagaagag gtttcaagtt ccacccaaat catcattgaa acttcttcgg      5700
     ccctttattg acaaagatgg aatcattagg gttggcggcc gtcttcgtca ctcccttgag      5760
     gattacacga ccagacatcc cgcagtactt ccgcaatctc acatcttcac tcgcctgatt      5820
     attgaaagtt atcaccaaca aatttttcat ggaggacatc gagcaacact agcggtaata      5880
     aggcaggagt tctggccaat tcatggaaaa agagctgtaa cctctgtttt acgaaaatgc      5940
     cagcgctgtt tccgtttcga tcccaagcct attcagcaac cgatgggaca gcttccgtca      6000
     gcccgagtgc gcccagctcg gccgtttttg ataactggtg ttgactactg cgggcccttc      6060
     tatttaaagc ccccgcatcg acgagcagct ccccataaag tgtacatagc cgtgtttatt      6120
     tgcttcacaa caaaagccat ccatcttgag cttgttatgg acctatcttc ggctggattc      6180
     atctcagcgc ttcgcagatt catcggccac cacggatgtc cgaaagaaat gcattccgat      6240
     aatgcgacaa actttcaagg tgccaagcat gagttgcatg atctctacaa aactttgcac      6300
     agcaagtcgg gtcagaccgc tattgggact gaactgtcgc agcaagaaat ttcgtggcac      6360
     ttcatacccc ctcgagctcc caattttggc ggattgtggg aagcagctgt ccgctcctca      6420
     aaaactgctc tgaaaaagga aattggctca caccagttga cccacgaaaa tttttgcact      6480
     ctattggtgc agattgccgc cgccctcaac tcaagacccc tatcgccatt atcagatgac      6540
     ccctctgata tagatgccct caccccagcc cattttttga tcgggacttc catgaaagcc      6600
     cttcctgatc ctgatctgac agccataccc tcgaaccgcc taacccacta tcagcaacga      6660
     caacagatgt ttcaacgcta ttggcaacgc tggacccagg agtatctcac gggacttcaa      6720
     caagcgagta agcatgttca acccactcct atccgcatcg ggaacatcgt ggtagttcga      6780
     gaagacaaca tacctcccct cgaatggcca ttagcgagga taatcgaagt tcatcatggc      6840
     gcagatggag tcataagagt tgtcaccata caaacgtcca agggaacgta caagcgtcct      6900
     gtgaaccgaa tttgtccatt acccatagaa gacaaaacag acgttgaaga ttagctggta      6960
     atgttagtat tgttaaaaat gttagtaata atgagttgaa acaagtttca agggggccgg      7020
     taatgttagc tgttagaagt ttagtat                                          7047
//
ID   BEL-597_AA-LTR repbase;    DNA;    INV; 538 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-597_AA_;
KW   Pao_Bel_Ele56x; BEL-597_AA-I; BEL-597_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-538
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 538 BP; 204 A; 82 C; 106 G; 126 T; 20 other;
     tgttagtaga tcattaattc aaacctatga gtttaaatmc twaagtgaac gtaaacttaa        60
     cattagcatg caatacgtac caccctagct caactgttat aaacccaata cgagtacact       120
     aaacattacg aatttacgaa ctacacacaa catacataca cagaaaacga agttgwaaca       180
     agattcggtw aaatgtacaa aagcaaatct gaattagtat ccaatcgaww gccaagaaat       240
     awaaasgttg maakttatcg cgcgtgaagt ttattwawaa taaagwgtwa ttagktggaa       300
     atawaaggtg tttgtgatat cggaatwatc agtggagttc ttggagtgaa ggaaaggact       360
     gtctaacgaa aattggaagg attagtgacg ggatcaagga gtgataktag wggaaggatc       420
     maaaggattg aagttattgg attgggaaag aaaaacgaac gattttaaca caacgtaggg       480
     atctgtggaa ttcggtactg aagctaaaac tcaacccacg aacctacaat ccccaaca         538
//
ID   BEL-598_AA-I repbase;    DNA;    INV; 6864 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-598_AA_;
KW   BEL-598_AA-LTR; Pao_Bel_Ele216; BEL-598_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6864
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5917-6474] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1014..3005
FT                 /product="BEL-598_AA-I_2p"
FT                 /translation="MQSKTGTIPKLKTHVTYEQWRSRTTNLEMEKEHLKQN
FT                 DIRRQRELELVNQLNRLEMQKDDGELRNLELIQQMKEHEQEKQRIIQQKQR
FT                 ECIELEQQMHRQSQEHGNLIEQQQKELEHLRCVEREYRNYTQNQENRFKHP
FT                 ASMTVNRGDGISNLRPLTGLPISSIPNSVNLREHIELPRQEDIWYISGYQQ
FT                 KSLPAFGNISTHSSGFPVSDALQSGTLPPSHDVRFRDRSSNVPEINTPVGG
FT                 RSNFDAECRSTDNFSVRHNQLQYPVFNSPVSAPPVLNNVVIPPQLAPTPQQ
FT                 LAARQVVNRELPIFAGDPIDWPLFISSYNHSTQACGYSDSENLLRLQRCLK
FT                 GSAKEAVSSFLLHPSTVAQVISTLQLLYGRPEQIVQSLIAKVRNTPAPKNE
FT                 RLDTLVSFGLVVQNLCGHLKAIGLENHLSNPVLLNELVEKLPTAVKFNWAL
FT                 HQRQLPVVDLSAFGEYMANVVSATSCVVSWNGGASKGIKDDRARGKDRAYV
FT                 NAHSNPGSSEGRREYTGESRENIVAQKEPSNTSGNTPLCPSCKNRGHLIEA
FT                 CGLFKRISIDDRWKVVKENRLCGRCLTSHTRWPCKGQVCGIDGCPRRHHRL
FT                 LHDKNSSVPKQIDTGKNVTVSLHRQPSSFNLFRIIPVTLYGRKGKLDTYAF
FT                 LDDGSSVSLIEDKIA"
FT   CDS           4279..6864
FT                 /product="BEL-598_AA-I_1p"
FT                 /translation="MEVHDKAGFHIRNWISNKEDVMRAIGEVHPTVVKTLT
FT                 LDQECGGERLLGMIWRPRDDIFSFTLNFREDLKDILAGDVIPTKRQLLRIV
FT                 MSIYDPLGLVSTFVVHGKIMIQEVWRSKTGWDERIPTSILVRWQQWLICLQ
FT                 GMEEIEVPRCYFSGYERCSFDTLQLHIFVDASAEAYAAAAYFRIVDRGVVR
FT                 CALVSSKTKVVPLQPLSTPRAELLAAVLGARLRKTIEEGHSLKVHRTYFWC
FT                 DSSTVHTWITSDLRRYRQFVALRVNEILNLSKPEEWRWVPTNQNVADEATK
FT                 WGKGPSFTSDSRWYRAPRFLYESEEFWPGDQEFRITETDEEVRPAYLNKHS
FT                 IMQPLVLVERFSKWERLLRCVAYVIHFVKRIGPQRKTATSNSTGNLSKEEL
FT                 IEAERVPWRSAQNEAYPDEVDILKSNKEASREQLKGVERTSSLVKLSPMMD
FT                 EYGVVRINSRLSAAEFLPFDTRYPIILPKDSYITRLVVDWYHRQHKHANDE
FT                 TVINEIRQKFHISKLRGRLSFVKKNCNWCRVYKAVPIIPRMASLPPERLTP
FT                 FVRPFSYVGIDYFGPYLVKIGRSSVKRWVALFTCLTIRAIHLEVAATLSTD
FT                 SCKKAIRRFIARRGAPLEIFTDNGTNFVGAGKELANEIMKLNVELSSTFTD
FT                 AHTQWRFNPPAAPHMGGCWERMVRSVKVALGSVPTLRKLDEESLSTMLAEA
FT                 EYMVNSRPLTFVPLATESEECLTPNHFLMMSSKGVKQPVKNPVGEGAALKD
FT                 SWSTLQMVLDHYWKRWLLEYLPTITRRSKWFQDVRPIKVGELVVIADEKLR
FT                 NSWTRGRVIRTYAGQDGVVRKADIQTNTGVLQRAVAKLALLDVGRFNDAEA
FT                 ELPSSSGGG"
XX
SQ   Sequence 6864 BP; 1981 A; 1489 C; 1725 G; 1660 T; 9 other;
     gaaaactcga agaawttaca ttggaatgtc caacccacca cgactttcaa tgattcgcca        60
     gacgcgatcg aaaacacgag ccgcgaagga gagtgtaaat cccaacctcc aagttgagac       120
     ggattcactg gaggaaaaac actcgtcaaa ttcgtttgag ccgtctatca tcgatgtcga       180
     gggaggtgat aagattgaat gcggtggttg taacaaaccc aataatgccg aactattcat       240
     ggtccaatgc cggtgctgtt cccgttggta ccatttctct tgcgccaacg tcaagcaatc       300
     gacggttcgg aaggaagcct ttgcgtgcaa attgtgcgtt ctaccagcga gttccagaac       360
     aagtcgcacc actacgtcca gtgtacgaca ggcgaggatt gcccgggagc tagagcacct       420
     tgaagaggag aggaagcttt tggagaggat gcacgaggaa gaattagcag gaaaaggcta       480
     ggaaggataa gttcgagcgc gaaaascaat acatcgccaa aaggttcgat ttgcttcggc       540
     agcaagatga gcaagaaatt gctagttcag ctagtagccg tcgtagtcag cacagtcgcc       600
     cggcaagcca aaatcgaatt cagaactggg tagacgatgt cgctagggtt gcccatggag       660
     tcggtggact gttgcccgga aataccgtca tcgttaatga aagggatttc gatccaaatg       720
     tgattgttgc caatgaaggt cacgcatcat caacacccgt acgtacgccg ttgcctaata       780
     cwgccagcgg tttggtccag ccagcaccgg tacggttacg tttgaatgat aagagccgag       840
     aattagcttt cgttccgcca accacgggaa gtattgagat cggagagaca gatgaggacg       900
     aatcaaaaga tatcggagct atcggtggat ccaatcgaaa aaggatctca cctgcgctat       960
     cgttcgttga tgtggtagga cccctcgatg atctcttgaa caaaccggca gagatgcaat      1020
     cgaaaaccgg tacgatcccg aaattgaaga cccacgtaac ctacgaacaa tggcgttctc      1080
     gcaccacaaa tctcgaaatg gaaaaggaac atcttaaaca aaacgatatt cgtcgccaac      1140
     gtgagctgga gttagtaaat cagttaaatc gactggagat gcaaaaagat gatggggaat      1200
     tacgaaattt agagctgata caacaaatga aggaacatga gcaagagaaa cagcggataa      1260
     tccaacaaaa gcaacgagaa tgcattgagt tggaacaaca gatgcatcgt cagagccaag      1320
     agcacggcaa cctcatcgag cagcagcaga aggagttgga acacctacga tgtgtggagc      1380
     gagaatacag aaactacacg caaaatcaag agaatcgatt taaacaccca gcgtcgatga      1440
     cagtgaatcg gggcgacgga atttccaacc tgcggccgtt gactggtctt cccatctcat      1500
     cgataccaaa ttcagtaaac cttcgtgaac acatcgagct tcctcgccaa gaagacatct      1560
     ggtacataag tggctatcag caaaagtcgc ttcctgcatt tggtaatatc tcgactcatt      1620
     ccagtggatt tccggtaagt gatgctttgc aaagtggtac tctgccgcct tcacatgatg      1680
     tccgttttcg cgaccggagc tccaacgtac ctgaaatcaa cacgcctgtg ggtgggcgct      1740
     caaacttcga cgcagagtgt aggagtactg ataacttttc cgttaggcac aatcaacttc      1800
     aatatccagt gtttaattcc ccagtttcgg ctccccctgt attgaacaat gtagttattc      1860
     ctcctcaatt ggcaccaact ccccagcagt tggcggccag acaagtggtt aatcgagaat      1920
     tacctatttt tgcgggtgac ccaatagatt ggccactatt tatcagtagc tacaaccatt      1980
     caactcaagc ttgtggctac tcagattctg aaaacttgct tcgtcttcaa aggtgcttga      2040
     aaggaagtgc caaagaagca gttagcagct ttctgctaca tccctccact gtggcgcaag      2100
     tgatttccac tttgcagctt ctgtacggaa ggccagaaca aattgtacag agcttgatag      2160
     ctaaagttcg taacacaccg gcgccgaaaa acgaacggtt ggatacgcta gtgagtttcg      2220
     gtttggtggt gcaaaattta tgcgggcatc tgaaagctat tgggctggaa aatcatcttt      2280
     cgaatccggt tctcctaaac gaacttgttg agaaactacc aacagcggtg aagttcaatt      2340
     gggctctaca tcaacgtcaa cttccagtag ttgatctgag tgctttcgga gaatacatgg      2400
     caaacgttgt gtctgcaaca agctgtgttg tgtcttggaa tggaggtgca tcgaaaggga      2460
     tcaaagatga tcgagctagg ggaaaagacc gggcgtacgt caacgcacat tcaaacccag      2520
     gatcgtcgga agggcgacgt gaatacaccg gagagagtcg cgaaaacatt gttgctcaaa      2580
     aagagccatc caatacttca ggaaatactc ctttgtgtcc atcatgtaag aatagaggcc      2640
     acctgataga agcatgcgga ttgttcaaaa gaatctctat cgacgatcga tggaaggttg      2700
     tgaaggaaaa tcgactgtgt ggccgatgtc tcacttccca tacacgttgg ccgtgcaaag      2760
     gtcaagtatg tggaatagat ggttgcccaa ggcgtcatca tcgacttctc catgataaga      2820
     actcatcagt gccaaaacag atagataccg gaaagaatgt gaccgtatcc ctccaccgtc      2880
     aaccatcatc attcaacctt ttccgkataa ttcctgtgac actttacggt agaaagggaa      2940
     aattggacac atatgccttc cttgacgacg gttcgtctgt ttctctgatt gaggacaaaa      3000
     tagccgawgc acttggcttg gaaggcgtcg ctgagtccct ttgtgtccat tggactggtg      3060
     gaattaagaa gaactattcg aatactcgga tggtttcact acaagtatct ggcgaaggaa      3120
     tcgataagcg ttatcaaatg tcggaagtat acaccgtgcg caatctgggt ttacctgagc      3180
     aaacaatgaa gatccgtgaa ttagccgatg agtttgagca tcttaagaac ctaccggttc      3240
     gcgatttgga ttctgctgtt cctggcatac tcatcgggca caataatgtt catctactgg      3300
     catgcctcaa attgagggaa ggacgagagc aggagccgat tgccacgaag acccgtttgg      3360
     gctgggttgt ttatggaagt cgacgagcag cagagatcaa ctttccacac cgkcagatgt      3420
     atatctgcac gaagcaagat gatcaaagct tacacgatta cgttcgtaag tttttttgcs      3480
     ctggaaagct taggtgtcgc agtggttccg gaagtgaaag gatcggaaga acagcgagcg      3540
     ttgtctattc tcaacgagtc aacggtgcgg acatctagtg gtcgtttcaa aactgccctt      3600
     ttgtggaagt acgatgaatt cgagtttccg gacagcaaat tgatggcggt taaaagattg      3660
     gagtgtttgg aacgaagact gcgcaaaaat ccagatttgt acgacaatgt tcgaaaacaa      3720
     attgcggaat atcaagaaaa aggatattct cataaagcta cagaagaaga actgcaacga      3780
     ttcgacccta gacgaacgtg gttcttaccc ttaggggtgg tattgaaccc caagaaaccc      3840
     aacaaagtgc ggctcgttcg ggacgccgct gctacagtgg acggagtatc gctcaatacc      3900
     atgttgatga aaggtcctga cctgttaacg cctctattac atgtattgtt tacctaccgt      3960
     gaacgagagg tggccatcac agcggatgtg aaagaaatgt tccaccaact tctggtgcat      4020
     gaagaagacc gcagtgctct gctgtatttg tggcggaatt cgactgaatc ggctttggac      4080
     acgatggtta tggatgtggc aatatttggc gcctcgtgct cacccacgca agcacaattc      4140
     gtcaagaacc taaatgctaw ggaatacgaa caccagtatc ccagggcggc gattgcgata      4200
     actcggcgac actatgtgga tgactattta gatagtgtcg attccgtaga tgaagctgta      4260
     gaactcatta cacaagtcat ggaagttcat gataaggctg gcttccatat ccggaactgg      4320
     atctctaaca aggaggacgt tatgagagca ataggwgagg ttcaccctac agtagtgaag      4380
     actttgactc tagaccagga atgtggcggc gaacgattgt tgggaatgat atggcgaccg      4440
     agggacgata tattttcatt caccttgaat tttcgcgaag atttgaaaga cattctggcc      4500
     ggtgacgtca ttccaacgaa acgacagttg cttagaatag ttatgagcat ttatgaccca      4560
     ttgggactag tttcaacctt cgtagttcat ggaaagataa tgattcaaga agtatggcga      4620
     agtaagacag gttgggatga aaggattcct acaagcattc tcgttcgctg gcagcaatgg      4680
     ctgatttgtc tacagggaat ggaagagatt gaagtgccac gttgctattt ttccggctat      4740
     gaacgctgca gctttgatac gctacaattg cacatattcg tggacgctag tgcagaagcc      4800
     tacgctgcgg ctgcatattt tagaattgtc gatcgcggag ttgttcgctg cgcgttggtg      4860
     tcatcaaaaa cgaaagttgt acctcttcag cctttgtcaa caccacgtgc agaattactt      4920
     gcagcagttc taggagctcg cctacggaag acgattgaag aaggacactc tttgaaggta      4980
     caccgaacat atttttggtg tgattcctct actgtacata cgtggatcac gtcggacctg      5040
     cgacggtaca gacaatttgt ggcgctaaga gtcaatgaaa tcctgaactt gtccaagcca      5100
     gaggaatgga gatgggttcc aaccaatcaa aacgtcgccg atgaagcaac taaatggggg      5160
     aagggacctt cgtttacctc tgatagtcgt tggtatcgag cccctcgctt tctgtacgaa      5220
     tccgaagaat tctggccagg agatcaggag ttccgtataa ctgaaacaga tgaagaagtc      5280
     cgacctgctt atctaaacaa acactccata atgcaaccac tcgttctcgt tgagcggttt      5340
     tctaagtggg agcgacttct cagatgcgta gcctacgtga tacattttgt caaacgaata      5400
     ggacctcaac ggaaaacggc tacttcaaac tctacaggaa atctgtcaaa ggaggagctt      5460
     atagaggcgg aaagagttcc gtggagatcg gcacaaaacg aagcgtatcc cgatgaggtc      5520
     gacattttaa agtcaaataa ggaagcttca cgtgaacaat tgaagggagt ggagagaact      5580
     agttcgctag ttaagctttc gccaatgatg gacgagtacg gagttgttcg cattaatagt      5640
     cgcttgtctg ctgctgaatt tctaccattc gatacccggt atccgattat tctcccgaag      5700
     gacagctata tcacccgcct tgttgtagat tggtaccacc gtcagcacaa acatgctaat      5760
     gatgaaacag tcataaatga gattagacaa aagtttcaca tttcaaaatt aagaggacgg      5820
     ttaagtttcg tcaaaaagaa ttgcaattgg tgccgtgtct acaaagcagt accgataata      5880
     ccacggatgg cttcgcttcc tccagaaagg cttactccct ttgttcgtcc attttcctat      5940
     gtaggaatag actacttcgg gccctatttg gtgaaaatag gaagatcatc agtgaaaaga      6000
     tgggtggcac ttttcacctg cttgacgatc agagccattc atttggaagt cgctgctaca      6060
     ttgtctacgg attcgtgcaa gaaggcaatt cgtcgattca ttgcccgacg aggtgcaccg      6120
     ctggaaattt ttacggataa cgggacaaac ttcgttggag ccggcaagga actggctaac      6180
     gagataatga aactcaacgt cgagcttagc agtaccttca cagatgctca tacgcagtgg      6240
     agattcaacc ctccagcagc tcctcatatg ggtggatgct gggagaggat ggtgcgctcg      6300
     gtcaaagtag cccttgggag cgttccgaca ttgcgaaaac ttgacgagga gtccttgtca      6360
     accatgctag cggaggcaga atacatggtt aactctcggc cactaacatt tgtacccctt      6420
     gccactgaat cagaagaatg tttgactcca aatcactttt tgatgatgag ttcaaaaggt      6480
     gtcaaacaac ctgttaaaaa cccagttgga gaaggagctg cgttgaagga tagctggtcc      6540
     acattacaaa tggttttaga tcactactgg aaacgttggt tgttggagta tctaccaacg      6600
     attacaagaa ggtcaaaatg gttccaagat gtgcggccga tcaaggtagg tgaacttgtg      6660
     gtgattgcag atgagaagct tcgaaatagt tggactcggg gacgtgtcat tcgaacatat      6720
     gcaggacagg atggtgtagt gaggaaagcg gatattcaaa caaatacagg agtcctgcaa      6780
     cgtgctgtgg cgaaactcgc gctgttggat gtcggacgat ttaatgacgc ggaagcggaa      6840
     cttccgtcgt catccggggg agga                                             6864
//
ID   BEL-598_AA-LTR repbase;    DNA;    INV; 419 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-598_AA_;
KW   Pao_Bel_Ele216; BEL-598_AA-I; BEL-598_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-419
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 419 BP; 141 A; 60 C; 80 G; 136 T; 2 other;
     tgttaggaaa ggatgttgcc cacgataccc ctcgatccat gcaaatgacc caacgccaat        60
     tggcmgttgg atatgtcata ggcttgtcaa agcttaaagg aggataggta gattattgtt       120
     katgaaatac agaaagagaa ttgttgattt tgttatcacg gtaaatttgt tattaaaaaa       180
     agttgaattc atttaaaatc taatgtttaa atttatatac tttagatata gaaattctgc       240
     aattttagtt ggattgatat tctgtggcta ttgaacacta tagaagacaa attgtaagac       300
     aggtaatttc cctaattgaa atggttttct aagaaatata tatattgcag cttcgagctt       360
     actctaccca aacgaacgag ttttgctacg cggattgtcc gaaaaatagt gtgaccaca        419
//
ID   BEL-599_AA-I repbase;    DNA;    INV; 5438 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-599_AA_;
KW   BEL-599_AA-LTR; Pao_Bel_Ele12; BEL-599_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5438
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4492-5067] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..3584
FT                 /product="BEL-599_AA-I_2p"
FT                 /translation="MEAIRKRRNVLFERMKWELSNASAVEKRKPPVGEVQE
FT                 RMHKLSELCEQFDKVQSEIEDQTEAIGEISSIFNHRLEFEELYYQVKGRYM
FT                 KLLEEHNPHGSSEGTIVEPADDLREAIRLLLDSQRILMTSQAAASNNVSQL
FT                 AGQIGSVSLSHPVADAQASGGQVPLEVRLPTIALPVFKGDRKHWTSFKDLF
FT                 ESCIHSKNLKNSVKLQYLLSHLDGEAKKLVSSFTITDANYVEVWERLNEFY
FT                 DKKKYTVAALVKEFVDQPPVNAPTLIGLRKLVSTSDEVVRQLKALGEQYES
FT                 RDPWLIHLLLEKLDRETRSLWAQKLVDEENPSFQDFITFLERRCDALETCA
FT                 SFSKKGADTATKKEQDRRVDQSTKPGKQIQSFLASTQQPCPQCSEAHTIYQ
FT                 CASFKRMAANDRRDFVQRAKLCFNCLKVTHSAKNCTSAVVCKQCKKKHHSL
FT                 LCTSGDSSASDSGQPREGPAAANQQHSGEAEHADSVASYVADLKTSCPANF
FT                 LSLLPTAVVKVLGKNNVFHEVRAMVDSACMNSLISKPAFDRLGLERRNANI
FT                 LVSGITDGKPSKTTGAVTLQISSRFDDRIVIVVEALILNHLVPDQPSQHFD
FT                 IDTGALDEASLADPTYNKCGKIDLLLGIEAFFSILEPGKLFDGRGIPIAQN
FT                 SVFGYLVGGHFNTSHVTEGRAMLGLTATMNLDRTLRKFWEVEEVPKSKQLT
FT                 PDELRAVEHFHSTLSRNETGRYTVRLPFDSSKPELGESATAAIRRFKAMER
FT                 KFSIDPELQQHYQKFMTEYEALGHMEKIPPCEVAVAPEQSFYLPHHGVWKV
FT                 DSETTKLRVVFDASSKSASGVSLNDRLLVGPNVNESLFNVFTRWRTYKIAF
FT                 CADIEKMYRQVLVAKEDADFQRIVWRDHPEQPLEHYRLLTVTYGTASAAYQ
FT                 AVATLQQVAADNKETHPMAAERIPKNFYVDDLLSGADSIEEAKFLRNDIVQ
FT                 VLNDGGFVLRKWSSNDPQILEVDAVQDDPIHLKLPQEDDSVKALGIRWNPQ
FT                 EDSFSFKLTFDIDSTNTKRQLLSDSSKFFDPFGWIAPIVIRMKILFQHLWL
FT                 YDLSWDDPLPAFILEEWIALKETLHHIERIRIRRWIPHSGGKLQLHGFADA
FT                 SEAAYAAVVYVRTVDQEGRIETNLVVAKTRVAPITPNIAATSGADGGRATR
FT                 RVDGQGTGVVFTPRSKNICVERF"
FT   CDS           3496..5409
FT                 /product="BEL-599_AA-I_1p"
FT                 /translation="MAAELLVELMVKVLESFSHLEVKIFAWSDSEIVLHWL
FT                 SSVPRKWKTFVANRTSKILQHLPRNHWRHVSSRDNPADCASRGITPLELLM
FT                 HPLWWRGPGWLSETEDKWPAQPGRLVEEDELLEQRTSVTCLFANATPPSRG
FT                 GHETLTFLLNRFSDLTRIRRVLCWINRLCHNGLARQRGAARLEGPLTPKEI
FT                 NDACLQLARAAQHDCFKKEIDCLVKNDPLPGNSKLKSLFPFIDADGTLRVG
FT                 GRLHNSSQPYDVRHPVIIPKEHQYTKLLLTETHLRNLHAGPTLMIATLNQR
FT                 YWIVGCQTVVRSSVASCTRCCRLKGKTATQLMGSLPSVRTTPARPFVHCGV
FT                 DYAGPILLRSSNLRTAKTIKGYVAVFVCLATKAVHLEAVSDLSTNAFLAAL
FT                 KRFCGRRGLCSEIWSDHGTNFVGADRAIREHLQSPEFNQAVSRYLSDLKIK
FT                 WKFITPSAPHMGGIWEAAVKSFKKHLRAVLGNTTLTYEELSTVLTQIEACL
FT                 NSRPLCQLSTSVDSYEALTPGHFIINQPLNLLPEPNINHIQEGRLNRWQRV
FT                 QRHVDDIWARWRNEYVATLQPRNKWQSVQQNLSSGQLVLIKNENTSPAAWE
FT                 LARIVATHPDQYGVVRTVTVRRGQNEYQRAVHKLVPLPMD"
XX
SQ   Sequence 5438 BP; 1376 A; 1427 C; 1417 G; 1218 T; 0 other;
     ttttggacct tcgtcgccgg atatttcgcg aaaccgctat ggaagcgatt cggaaacgcc        60
     gcaatgtgct tttcgagcgc atgaagtggg agctgagtaa cgcgagtgcg gtggaaaaac       120
     ggaagcctcc tgtcggcgaa gtgcaggagc gcatgcacaa actttccgag ctttgtgaac       180
     agtttgataa ggtgcaaagt gaaatcgaag atcaaactga agcgattggt gaaatcagct       240
     cgattttcaa ccaccggttg gaattcgagg agttatacta ccaagtgaaa gggcgctaca       300
     tgaagctgct cgaggaacat aacccccacg gaagcagtga aggaacaatc gtcgaaccag       360
     cggatgatct acgagaggca atcaggttgc ttctggattc gcagcgaatc ctaatgacgt       420
     cccaggctgc agcttcgaac aacgtgtcgc agttggctgg ccaaatcggt tccgtgagtc       480
     tttcccatcc ggttgctgac gctcaagcgt ccggaggcca agttccgctc gaagtacgct       540
     tgccaacgat tgccctcccg gtcttcaaag gcgaccggaa acactggacc tccttcaagg       600
     atcttttcga aagctgcatt cattcgaaaa acctcaaaaa ctccgtgaag ctgcagtacc       660
     tgctttccca cctggatgga gaagcgaaaa agttggttag ttcctttact atcaccgacg       720
     ccaactatgt ggaagtatgg gagaggctga acgagtttta cgacaagaag aagtacaccg       780
     tcgcggcact tgtcaaggaa tttgtggacc agccgccggt taatgcgcca acgctcattg       840
     gacttcgaaa gctcgtttca acgtcggatg aagtagtgcg gcagctcaag gctctgggag       900
     agcaatacga atcccgtgac ccatggctga ttcatttgct gttggagaaa ctcgaccgag       960
     aaacccgttc gttgtgggca caaaagctag tcgacgagga gaatcctagc ttccaagatt      1020
     tcatcacgtt ccttgagcga cgatgcgatg ccttggaaac ttgcgcgtcc ttttccaaga      1080
     agggggccga caccgcaacg aagaaggagc aggatcgaag agtggaccaa agcacgaaac      1140
     ccggtaagca gattcaaagc ttccttgcaa gcactcagca gccttgcccg cagtgctctg      1200
     aggctcacac catataccag tgtgccagct tcaaaaggat ggcagcgaat gaccgtcgag      1260
     attttgtgca acgagccaag ctctgcttca attgccttaa agtgacccat agtgcgaaga      1320
     actgcacgtc tgcagtggtg tgcaaacaat gcaagaaaaa acatcactca ctgctttgca      1380
     caagtggtga cagctctgcc tccgattccg gccagccccg cgaaggacca gcagcagcaa      1440
     atcagcaaca ttcaggtgaa gcggaacatg cggattctgt ggcatcatat gtcgcggatc      1500
     tcaaaaccag ctgtccagcg aacttcctca gtttgctgcc tacggctgtc gttaaagtgt      1560
     tggggaagaa caacgtcttc cacgaagtac gggcaatggt ggactctgcc tgtatgaatt      1620
     cgctcatcag caaaccagcc ttcgatcgtc ttggcctgga aaggcgcaac gccaacattc      1680
     tcgtgagtgg catcaccgac gggaagccca gcaagacaac aggagcggtc acactacaga      1740
     tctcatcgcg attcgacgat cgtatcgtca tcgtggtgga agccttgatt ctgaatcatc      1800
     tggttccgga tcaaccgagt caacattttg acatcgacac tggtgccttg gacgaggcat      1860
     cactcgcaga cccaacctac aacaagtgtg gtaagatcga ccttttattg ggaatagaag      1920
     ccttcttttc cattctagaa ccgggcaagc tgttcgacgg tcgaggcata cccattgcgc      1980
     aaaattccgt cttcggctac ctggttggtg gtcatttcaa cacgtcgcat gtcaccgaag      2040
     gtcgtgcgat gctcggacta acagcaacca tgaatctgga tcgaacgctc cggaaattct      2100
     gggaggtgga agaagtgcct aaatccaagc agcttacccc ggacgagctg cgcgctgttg      2160
     agcactttca ctccaccctc tctcggaatg aaactggacg atatacagtt cgcctaccct      2220
     tcgatagttc caagccggaa ctgggcgaat cagctaccgc tgccatccgg cggttcaagg      2280
     ccatggagag gaaattcagc atcgatccag aattacaaca gcactaccag aagttcatga      2340
     ctgagtacga ggctctcggt cacatggaga agataccgcc atgcgaggtg gcggtcgcac      2400
     cggaacaatc cttctacctt ccgcatcatg gtgtgtggaa agtggacagc gaaacgacga      2460
     aacttcgcgt cgttttcgac gcctcgagca agagtgcttc cggggtgtca ctgaatgatc      2520
     gcctgctagt gggaccgaac gtgaacgaat cgctcttcaa cgttttcacc cgctggcgca      2580
     cctacaagat tgccttctgt gccgacatcg aaaagatgta tcggcaagtt cttgtcgcca      2640
     aggaggatgc cgatttccag cgaatagtgt ggcgcgacca tcctgagcaa cctctggaac      2700
     attatcgttt gctgaccgtc acctacggta cggcgagcgc ggcgtaccaa gctgtggcga      2760
     ccctacaaca ggtagcagct gataacaagg aaactcatcc gatggcggca gagcggattc      2820
     cgaaaaactt ctacgtggac gatctgctct ctggggcgga ttccatcgag gaagccaagt      2880
     ttctccgcaa cgacatcgtt caggtactca acgatggggg cttcgttctg cgcaagtgga      2940
     gctccaacga tccgcagata ttggaagttg atgcggtaca ggatgatccc atccacttga      3000
     agttacccca agaagatgat tccgtcaaag ctttggggat cagatggaac ccgcaagaag      3060
     actcgttctc cttcaaactc acgttcgaca tcgatagcac aaataccaaa cgtcagctgc      3120
     tatccgattc gtcgaagttc ttcgatccat tcgggtggat cgcaccgatt gtcatccgaa      3180
     tgaaaatact gttccaacat ctatggctct acgacttgag ttgggacgat ccacttcctg      3240
     ctttcatcct ggaagagtgg atagctttga aggagacact gcaccatatc gagagaatcc      3300
     gaatcagaag atggattccg cactctggag gtaagctaca actccacgga ttcgccgacg      3360
     cttctgaagc tgcatacgct gctgtcgtct acgtgcgtac cgtggaccaa gaaggaagaa      3420
     tcgaaacgaa ccttgtggtg gccaagacta gggtggctcc cattactcca aatatcgctg      3480
     ccacgtctgg agctgatggc ggccgagcta ctcgtcgagt tgatggtcaa ggtactggag      3540
     tcgttttcac acctagaagt aaaaatattt gcgtggagcg attctgaaat cgttctgcac      3600
     tggctttctt cggtgccaag gaagtggaag actttcgtgg ccaatcgaac atcgaagatt      3660
     ttgcaacatc tcccgaggaa ccactggcga cacgtgtcat caagagataa tccagctgac      3720
     tgcgcatcac gtggcatcac acctttggaa ctcttgatgc atcccctgtg gtggaggggc      3780
     cccggctggc tctcagagac ggaagacaaa tggcctgccc aaccaggtcg tttagttgag      3840
     gaggacgaat tgcttgaaca gcgaacatcg gtgacctgct tgtttgctaa tgccacgccg      3900
     ccttccaggg gtggtcacga aacactgacg tttctgctca atcgtttctc cgatttgact      3960
     cgcattcggc gcgtcttgtg ctggatcaat cgcctatgtc acaatggttt ggctcgtcaa      4020
     cgtggtgcgg cccgactgga aggaccgcta acaccgaagg aaatcaacga cgcctgtttg      4080
     cagttggcaa gagctgctca acacgactgc ttcaagaagg aaatcgattg tctggtcaag      4140
     aacgatccgc ttccaggcaa tagcaagctg aaaagtctgt ttcctttcat cgatgctgat      4200
     ggcactctgc gggttggtgg tcgccttcac aattccagcc aaccgtacga cgttcgccat      4260
     ccggttatta tcccgaagga gcaccagtac accaagttgc ttctgacgga aactcatctt      4320
     cgaaatttgc acgcggggcc aactttgatg attgcaacgc tcaaccagag atactggatc      4380
     gttggttgcc aaacggtggt gcgtagctct gtggcgagct gcacgcgctg ctgtcggttg      4440
     aaagggaaaa ccgccaccca actgatggga agtctacctt ctgtccgcac aactccagcc      4500
     cgtcctttcg tgcactgtgg tgtcgactat gcaggcccaa tcctgctgcg ctcatctaac      4560
     cttcgaacgg caaagactat taagggttac gtcgctgtct tcgtttgcct tgcaacaaag      4620
     gcagtacatt tggaagcggt ctccgatctt tcgacaaatg catttttggc cgccttgaaa      4680
     cgcttctgtg gtcgtcgtgg tctttgtagc gaaatctggt ctgaccacgg aacaaatttc      4740
     gtgggtgctg atcgtgccat ccgtgaacat ctgcaatcac cggaattcaa ccaagcagtg      4800
     agtcgatacc tctcggacct gaaaataaaa tggaagttca tcactccatc cgctccccac      4860
     atggggggaa tctgggaggc cgctgtgaaa agttttaaga agcatctccg agccgtgctt      4920
     ggaaacacaa cacttacata cgaggagctt tcaaccgtct tgacgcaaat tgaggcgtgt      4980
     ttgaattcgc gtccgttatg ccagctatca acatcggtcg actcatacga ggccctaacg      5040
     ccagggcact tcatcatcaa ccaaccgcta aatttgcttc ccgagccgaa catcaaccac      5100
     atccaggagg gtcgtctgaa cagatggcaa cgtgtacaac gacacgtgga cgatatttgg      5160
     gcacgatgga ggaacgaata tgttgccaca cttcaacctc gtaacaagtg gcaatcagtg      5220
     cagcagaacc tgagttcggg gcagttggtc ctgatcaaaa atgagaacac atcgccagcg      5280
     gcatgggaac tcgccagaat tgtcgctacc catccggatc agtacggtgt tgtacgcaca      5340
     gttactgtac gacgtggaca gaacgagtat cagcgagcgg tgcacaagct ggttccgctt      5400
     cctatggatt gaggcatccg cctcaagggc cgggtgga                              5438
//
ID   BEL-599_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-599_AA_;
KW   Pao_Bel_Ele12; BEL-599_AA-I; BEL-599_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-269
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 269 BP; 74 A; 74 C; 53 G; 68 T; 0 other;
     tgttcgcgtg cagaccatcc ctacacgctg tgtagacttc gtgcacatcc ctcgcagcgc        60
     aaacgtcatc atcgcagccg cgcgctgcca acattactcc acttcctttt ccgctaagag       120
     aaggcagaaa aagtacagtc gtctgaccaa tcggtcgtaa aaagtgtgct cactaaaagt       180
     aaaattaaaa taagttaata cagtccattt tgagttcgaa aaagtagtcc gccgtgtttt       240
     attacgtccc gttagctccc tcgcgtaca                                         269
//
ID   BEL-59_AA-I repbase;    DNA;    INV; 5876 BP.
XX
AC   supercont1.11;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_AA_;
KW   BEL-59_AA-LTR; BEL-59_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5876
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.11; Positions 2168728 2174603.
XX
CC   Positions [4917-5465] - Integrase core
CC   'CAGAC' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..1790
FT                 /product="BEL-59_AA-I_1p"
FT                 /translation="METRNDSPRNCQSCSRKDSAEGEMVQCESCMLWEHFG
FT                 CAGVDEQVRRSDVKYICKRCNHPGVSNDRLKIPSGDLRSKGAKVGSKISSK
FT                 ASSKKGKKIVDPAGSVTSSVRAAMLAEQLKLIEEDQLLQEQEIRDQEEIQK
FT                 RLLEEEERQLEEKKKLAEEAKQIRERKLQEELDAKRKQQQVRRESLEKRQE
FT                 IIRQLAEASSRSGSVVSSRQKVHNWLNDQDITGRSDGNHVRDAVKPNIIRI
FT                 SEDPRKEPAQPLTLVPPVDVNAQSSFVVPPDFVPLSPPTTNLPTYPTRTLS
FT                 QAQIAARQVLGKDLPVFDGNPEDWPIFISNYDQSSATCGYSDAENLVRLQR
FT                 SLKGNALESVRSRLLLPASVPHVIETLRTLFGRPELLIRSMLSKINRIPSP
FT                 RHDHLESVMHFGLAVQNLVDHLKAANQYNHLTNPVLMQELVEKLPGSMRLD
FT                 WAMFKAKHQAATLATFGEFMSGLVTAASEVSFTLPSFNASQKYTVSTDTRS
FT                 GRQRSGNTAVLQAHSTDCNQITNFATTPTSSKPANNALRAEERVTGWPNVN
FT                 SSSQPASTNVGLWFSKKDSAEPALITTANGLADPGADAA"
FT   CDS           join(2454..3362,3366..5876)
FT                 /product="BEL-59_AA-I_2p"
FT                 /translation="MNDQLRDYFTLEEIGCTERGNLVEPIEDQRAKRLLKD
FT                 TTQRTRSGSNFETGLLWKTDDLNFPDSFPMAVRRLESLERRLNREPALQKC
FT                 VRDQIADYERKGYAHRASLWELTSVDSKRVWYLPLGVVPNARKPGKVRLIW
FT                 DAAAKVGDTSFNSQLLKGPDLLTPLPKVLCQLRQYPVAVTGDIMEMFHQIK
FT                 IRAPDCQSQRFLFREQPTDPPRVYIMDVATFGSTCSPASAQYAKNLNAQEF
FT                 TEEYPRAVTAIIDKHYVDDYLDSFETISEAVSVVNEVKLVHSKGGFTLRRF
FT                 LSNEPAVLQGIEPVETESKNLDLERAGKIESVLGMEWVPSDDVFTYTLGAR
FT                 EDILPFLDSSRVPTKREVARVVMSLFDPLGLISYLLVHGKVIIQELWIKGT
FT                 EWDAQIPQDTNARWQQWTESLQQLEQLRITRYYFPGSLPKDFVSLQIHLFV
FT                 DASDTAYAAVVYFHLQTERGIHVALVGSKTKVAPLKALSIPRLELKAAVLG
FT                 SRLMETIQTQHSYPISQRFCWTDANTVLAWVRATDHRRYHKFVAVRIGEIL
FT                 SSTQQSEWRWVPSKTNAADLATKWNNGPQEMVNSQWFNGPSFLYNPEEQWP
FT                 RQQKNTITDEELRPVHFSLAHFSSSMVFERFNQWSKLLRVAAYVLRWIDNL
FT                 KRRRNGENLELGILTSNELRRAEEALLKTAQCESNAEEVAILNKTSGPPER
FT                 RHPTVNKSSEIYKKLPYIDDLGILRSRGRIGAAPYASMDAKFPIILSKQHV
FT                 ITFLIVDWYHRRLRHANRETIFNEIRQRFEISALRRLLEKVERVCTICRIA
FT                 KATPKSPVMAPLPEMRLTAFIQPFTYTGLDYFGPLLVKMGRSNVKRWVAVF
FT                 TCLTIRAVHIEIVHSLSTGSCIMAVQRFVSRRGHPREFWSDNATCFQGTSN
FT                 ELREHNRSMAKKFTTSRCTWKFIPPAAPHMGGAWERLVRSVKVAIGAVMEA
FT                 PRKPDDETLETILTEAEGMINSRPLTYIPLESADQEALTPNHFLLGNSSGS
FT                 KFLYTEPKGSCVVLRNSWKLARYITDDLWRRWLKEYLPMITRRCKWFEDVK
FT                 ELEVGDLVLVVDGTARHKWVRGRIEEVIPGRDGRVRQALVRTSSGVLRRAA
FT                 VKLAVLDVAGKSKPCSISSGAVDPHEGLRAGV"
XX
SQ   Sequence 5876 BP; 1658 A; 1410 C; 1457 G; 1351 T; 0 other;
     atttctttaa gaaatttgtg ggtatcggaa gtatggaaac ccgcaacgat tcccctcgta        60
     attgccagtc atgttcccgg aaggactctg cagaaggcga gatggtgcag tgcgagtcct       120
     gcatgctctg ggagcatttt ggatgcgccg gtgtcgacga acaagttcga aggtcggatg       180
     ttaagtacat ttgtaagcga tgtaatcacc caggggtgtc caacgatcgt ctcaagatcc       240
     cttccggcga tttgcgctcc aagggagcaa aggtaggttc gaagataagt tccaaggcaa       300
     gctcgaaaaa agggaagaag attgttgatc cggccggtag tgtaacctcc agcgtacgtg       360
     cggcaatgtt agctgaacag ctgaaactta tcgaggaaga tcaactgttg caggaacaag       420
     agataagaga tcaggaagaa atccagaaac gtttgttgga agaagaagaa cgccagttgg       480
     aagagaaaaa gaagctcgcc gaagaggcga aacaaattcg cgagcgaaag ttgcaggagg       540
     agctagacgc taaacggaaa caacaacaag tgaggagaga atcgctagag aaacgtcagg       600
     aaatcatacg acaattggcg gaagcaagca gccgaagtgg atcggtggtg agctcccggc       660
     aaaaggtgca taactggctg aacgatcagg acattactgg aagatctgac gggaatcatg       720
     ttcgggatgc tgtcaaaccc aacattattc ggatttccga agacccacgg aaggagcctg       780
     ctcagccgct tacacttgta ccaccggtcg atgtcaatgc acagtcgtcg tttgtcgtac       840
     cacccgactt cgttccgtta tcgcctccca ccacaaactt acccacatat cctacacgaa       900
     ctctgtcaca ggcccaaatc gcagcacgac aggttttggg gaaggatctg ccagtgtttg       960
     acggaaaccc ggaagactgg ccgattttca taagtaacta tgaccagtct tcggcaacct      1020
     gtggctattc ggatgccgaa aacctcgttc gtcttcagcg atcgctgaaa ggaaatgccc      1080
     tggaatcagt gaggagccgt ttactcctcc cggctagcgt tccgcacgtt atcgaaactt      1140
     tgcgcaccct tttcggacga ccggagctcc tcattcgttc aatgttgagc aagattaatc      1200
     gaattccatc tccaaggcac gaccatctcg agagcgtcat gcacttcggt ctagctgtgc      1260
     aaaacttggt cgaccatctc aaggcagcga accaatacaa ccatttgaca aacccagtac      1320
     tcatgcagga acttgtggaa aaattaccag gttccatgcg actcgattgg gctatgttca      1380
     aagccaagca tcaagctgcg actctcgcaa ccttcggtga attcatgtca ggattggtaa      1440
     ctgcagccag cgaagtttct ttcactcttc caagcttcaa cgcaagccag aagtacacag      1500
     tatcaacgga tactcgaagt ggcaggcaaa ggagcggaaa tacggctgtg ctccaagccc      1560
     actcaacaga ttgcaatcaa attaccaatt tcgctactac tcctacaagt tctaagcctg      1620
     caaacaatgc actgcgtgcg gaagaacggg tcacagggtg gccgaatgtc aacagttcat      1680
     cgcagccagc gtcgacgaac gttggactct ggttcagcaa aaaggactct gccgaacctg      1740
     ccttaataac cacggcaaat ggccttgccg atcctggagc ggatgcagcg tagacaattg      1800
     ccgtcaaaga catcacacgc ttcttcattc ctcgagccct ccagaaacag taaacgtctc      1860
     accaagtcac gttatttgtg gaaacttcca atggccactc tttcgaatca taccagtggt      1920
     gttatatggt cgtgacactt cgcagaccgt ctacgccttt atcgacgaag ggtcgtcgta      1980
     cacacttgta gaagactccg tggctatgcg actaggtatt accggcgaag aacaaccgtt      2040
     aacactaaag tggaccggaa acgtaagcag ggtcgaatcc aaatcgcagc aagtacagct      2100
     cgatatatcc ggtaagggta tcgatactcg atacacactc agccacgctc gcacggttgg      2160
     tcgtttggtt ttgcccaccc aaagcctaaa gtacaaggaa ttagcacgtc gttttccaca      2220
     cttgcgagga ttgccaatag aggattacga gctagttcaa ccaaaaatac ttattggact      2280
     ggacaacctc agattggccg gttccactga aactacgaga aggaggttca cttgatccta      2340
     tcggagcgaa atgtcgtttg gggtggagca tttatggatg tgttccgaac caaacgtctc      2400
     attcagcaat tgtcggtttt cacgtcgctg ccgcctccgt gtcggatcag gaaatgaacg      2460
     atcaacttcg agactatttc accctcgagg agatcggttg cactgagcgt ggcaatcttg      2520
     tcgaaccaat agaagatcaa cgggccaagc ggctgttgaa agatacaaca caacgtacac      2580
     gatcgggatc aaatttcgaa acaggtttac tttggaagac agacgacctg aactttcctg      2640
     atagcttccc aatggccgtt cgccgcctag aatcgcttga acgtcggtta aaccgtgaac      2700
     cggcattgca gaagtgtgtc cgtgatcaga tcgcagatta tgaacgaaag ggttatgcgc      2760
     accgagccag tttgtgggaa ttgacatctg ttgactcgaa acgcgtttgg taccttccac      2820
     tgggcgtggt acccaatgcc agaaaacctg gaaaggtgag attgatttgg gacgcagcag      2880
     cgaaagtagg tgatacgtct ttcaactctc aacttctgaa agggccggat ctcttgaccc      2940
     ctcttccaaa agtcctatgc caattacgac agtatcctgt ggccgtcacc ggggatataa      3000
     tggaaatgtt ccaccagatc aaaattcgcg caccagattg ccagtcccaa cgcttcctgt      3060
     tccgagagca gccaacggat cctcccaggg tctacataat ggacgtggcc accttcgggt      3120
     ccacctgttc accggcgtcg gcacagtacg cgaagaacct taacgcacaa gagttcaccg      3180
     aagaatatcc gcgagcagta acagcaatca ttgataagca ctacgtcgac gactatttgg      3240
     acagtttcga gacgatttca gaggcggtga gtgttgtgaa tgaggtaaaa cttgtacact      3300
     ctaaaggtgg ctttactctt cgtcgctttc tgtccaacga acctgcagtt ttgcaaggca      3360
     tatgagaacc agtagaaacg gaatcaaaaa acttggacct cgaacgtgct ggaaaaattg      3420
     agtcagtgtt ggggatggaa tgggtcccaa gcgatgacgt gttcacctac acccttggcg      3480
     ctcgtgaaga tattctccca tttttggaca gcagtcgggt tcccacaaag cgagaagttg      3540
     ccagagtagt catgagtctg tttgacccac tcgggctcat atcctatctt ttggtgcatg      3600
     gaaaagttat aatccaagaa ctgtggataa aaggcacgga atgggatgca caaattcctc      3660
     aagataccaa cgcccgctgg caacaatgga ctgaatcgct acagcaacta gaacaactgc      3720
     gcattacgcg atactatttc cctggctctc ttccaaaaga tttcgtcagt ctacaaattc      3780
     acctatttgt agacgcaagc gacacagcct acgcagctgt ggtgtacttc catttacaaa      3840
     ctgagcgagg tatacatgta gcacttgtcg gttcaaaaac caaagttgcg cctttgaaag      3900
     ccctctctat tccaagactt gagcttaagg cagctgtcct tggctcccgc ctgatggaaa      3960
     caatccaaac tcaacactca tatccgataa gtcaacgttt ctgctggacg gacgctaaca      4020
     ctgtactagc atgggttcgt gctactgatc atcgtcgata tcacaaattc gtcgccgtta      4080
     gaataggaga gattttgtca tccacgcaac agtcagaatg gcggtgggta ccatcgaaaa      4140
     ctaatgcagc tgatttggcc actaaatgga acaacggacc acaggaaatg gtgaatagcc      4200
     aatggtttaa tggaccttcc ttcctataca acccggaaga acaatggcca agacaacaga      4260
     aaaacaccat tactgatgaa gaacttcgac ccgtacactt cagcttagca cacttctctt      4320
     caagcatggt gttcgaaaga tttaaccagt ggtccaagtt gctacgcgtg gctgcgtatg      4380
     ttcttcgttg gattgacaac ctcaaaaggc gtagaaacgg ggaaaatctg gaacttggca      4440
     tccttaccag caatgaacta cgtcgagcag aagaagcatt gctgaaaacg gctcagtgtg      4500
     agtctaatgc agaagaagtc gccatcctta ataagacatc aggaccacct gagcgacgtc      4560
     atccgacggt gaacaaatcc agtgaaatct acaaaaagtt accgtatatc gacgatttag      4620
     gaatactgcg aagccgtggt cgaatcggtg cggcaccata cgcatccatg gacgctaaat      4680
     ttcctatcat actctctaag caacatgtta taacgttcct aatcgttgat tggtatcatc      4740
     gtcgtctccg tcacgcaaac cgtgaaacta tattcaacga aatacgtcaa cgattcgaaa      4800
     tatctgcact acgacggctg ctggagaaag tagaacgggt gtgtacgatt tgtcgcattg      4860
     cgaaagctac accaaaatcg ccggtaatgg cgcctcttcc agagatgcgt ctgacagcgt      4920
     tcattcagcc gttcacttat accggactgg attactttgg tccgctgctt gtgaagatgg      4980
     gcagaagtaa cgtgaagcgt tgggtggctg tgttcacttg ccttaccatc agagcggtgc      5040
     acatagagat tgtacactcg ctaagcactg ggtcgtgcat catggcagtt caacgattcg      5100
     tgtcacgcag aggtcatcca agagagtttt ggtctgataa tgccacatgc tttcaaggta      5160
     caagcaatga actaagagag cacaacagat ccatggcaaa aaagttcacc acctctagat      5220
     gtacgtggaa atttattccc cctgccgctc ctcatatggg aggggcgtgg gaaagacttg      5280
     tgcgttcggt gaaggtcgct atcggagcag tgatggaagc tccacgtaag cccgatgacg      5340
     agacattaga aactattcta acggaagctg aagggatgat taactcgagg ccacttacgt      5400
     acattccatt agagtcggct gaccaggagg ccttaacacc taatcatttt ttgttgggaa      5460
     actcttctgg gtcaaaattc ttgtataccg agccgaaggg cagctgtgta gttctgagaa      5520
     acagctggaa actagcaagg tacattacgg acgacctttg gcgaaggtgg ctcaaagagt      5580
     atctaccaat gattactcgc agatgcaagt ggttcgagga tgtgaaggag ctggaagtcg      5640
     gggacttagt gttggtggtc gacggaacag ctagacataa gtgggtacga ggacgtattg      5700
     aagaagtgat tcctgggcga gacggaagag tgcgacaagc actggtacga acatcgtcag      5760
     gagtattacg aagagcagct gtaaaactag ctgtactgga cgtcgcggga aaaagtaaac      5820
     cttgttccat ttcatctgga gctgtagacc ctcacgaagg tttacgggcg ggggta          5876
//
ID   BEL-59_AA-LTR repbase;    DNA;    INV; 559 BP.
XX
AC   supercont1.11;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_AA_;
KW   BEL-59_AA-I; BEL-59_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-559
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.11; Positions 2168169 2168727.
XX
SQ   Sequence 559 BP; 204 A; 113 C; 86 G; 156 T; 0 other;
     tgttgcgacg aaactcctcg cctcggcaac actgtcgaat ctgtatgtgt agtggaccgt        60
     aacctgaaca gccaaggaac gtcaacaaca gtgagcatgc agaaaacaga aaatacacaa       120
     caagtcgtcg aagaaagtgt tctttaatta ccaacttact attatcgatc tacttaaagc       180
     tataagggtt agtgattata attgtcaaac tatgttcaag gtactcattc tactatttac       240
     agctatttac agtttctaaa tctaatccta caaactactg tgcaaaattg taaacctaaa       300
     ctataagata ttactaccgt aagtacgaca caactgaaat tgaatattca caaacaaatt       360
     atgtaacgtt cactagatcc acattattcg gagtcggaag tcgctgaaat ccattaccac       420
     ttccagattt aaaacaccaa atttgtaagc ccttgaatta gagtcactta aatgaattta       480
     ataaaaatct tattcgtagc ttaaagcaca ctaacataaa aaggtgtttg ctcaacggag       540
     ttggtgacat aacccaaca                                                    559
//
ID   BEL-59_CQ-I repbase;    DNA;    INV; 2313 BP.
XX
AC   AAWU01004145;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_CQ_;
KW   BEL-59_CQ-LTR; BEL-59_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2313
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 271-271 (2011).
XX
DR   GenBank; AAWU01004145; Positions     766    3078.
XX
CC   'CTTAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           373..2313
FT                 /product="BEL-59_CQ-I_1p"
FT                 /translation="MGPKIPRTPLKKEGEEEEDLENLVFLREEQTEVIDRL
FT                 KATIDATLVEERTEAAAKVHRWRLDTCFAEFAAIKERIYRADPKKRNDHKK
FT                 VVVEFEALFDQLAMTLGGWNAGAAPAASSALVERHDRPIVIQQPLPRVFPS
FT                 FDGKYENWEKFKVMFVDVVDKTNESARMKLYHFEKALIGDAAGFIDAKAIQ
FT                 DGNYAHAWKQLTDHYEDKRRMVDLHIGGLLSVKKLACEGHLELRALVDSVV
FT                 GNVENLKYLGQEFTGVSEQIVVYLLGHALDDDTRKVWESTVAKGAFPKYDE
FT                 MIKTLKDRISVLERCDTTNDESPRQQHQAKSTTTNQPYQISNTAVTSSPRI
FT                 WCDFCNGRHLTFKCTAFSGLTVRQRMQEVKEKRVCFNCLRAGHSVKRCIRT
FT                 SSCGKCQRRHHTLLHDFYQKSTTLQRPVPAVRQTQEPLSPAEVICNPTPML
FT                 QTAIVNLRDDNNRPVPCRILIDSGSQVNFISNSMATRLNLRRVAVNVPICG
FT                 IGGATFNAKETITVKLQSQHSDFSADVECLIVPKVSGKIPSLPVNSTDWPI
FT                 PKGLQLADLNFHIPGSIDMLVGASWFFRLLKGGHIQLWDNFPELRETHLGW
FT                 VVVGGAEGAISGQQYTHTATLDTRAAMFLKVPDRPEEVSAGSSPSPGGG"
XX
SQ   Sequence 2313 BP; 591 A; 649 C; 647 G; 426 T; 0 other;
     ttggtccttc aacccggatt ggaccccggc gtggacgctg gaaagaagac tggtgaagtg        60
     aggaggcaaa ccggcctcag cgcgaacagt taccgagtgt ctcgggaagc aaaccggctt       120
     ccgcgtgaaa acaaaagaac attcgcgggg tgcaaaccgg cttccgccgc gagtgttagt       180
     gcaaggcaaa ccggccttgg cacacgaacc gttccgtgga accatcgggg gaggcaaacc       240
     ggcctcagac cgactccgga agaacaaaaa gtgccaccca gcgtggaaaa aagtgaaaca       300
     aacacgaaag aacaaagtga aagtaccacg tgctgttcct aacctcaaaa gtgtgcaaaa       360
     gtgacaaaaa aaatgggccc caaaatacca cgcacgccgc tcaaaaagga aggcgaggag       420
     gaagaagacc tggagaacct ggttttcctc cgggaagagc agacggaggt gattgatcgg       480
     ctgaaggcaa cgatcgacgc gactctcgtc gaggaacgca ctgaggccgc tgcgaaggtt       540
     caccgatgga ggttggacac gtgcttcgcc gagttcgccg ccatcaagga acgcatctac       600
     agggctgatc cgaagaagcg gaacgaccac aagaaggtgg tcgtggagtt cgaggccttg       660
     ttcgaccaac tggccatgac gctcggaggt tggaacgccg gtgccgctcc agctgcatcg       720
     tccgccctcg ttgaacgaca cgaccggccc atcgtgatcc agcaacctct tccacgtgtt       780
     ttcccatcct tcgatgggaa gtacgagaac tgggagaagt tcaaggtgat gttcgtcgac       840
     gtcgttgaca agacgaacga gtcggcgcgc atgaagctgt accacttcga gaaggctttg       900
     atcggcgacg cggccggctt tatcgacgcc aaggccatcc aggatgggaa ctacgcccat       960
     gcctggaagc agctgactga tcactacgag gacaagcgcc ggatggtaga ccttcacatc      1020
     ggaggtctac tgagtgtaaa gaagctggcc tgcgagggcc acctggaact tcgggctttg      1080
     gtggattccg tcgttgggaa cgtcgagaac ctcaagtacc tcggccaaga gttcaccggg      1140
     gtgtccgaac aaatcgtcgt ctacctcctg ggccatgctc ttgacgacga cacccggaag      1200
     gtttgggagt ctacggtcgc aaaaggtgcc ttcccgaagt acgacgagat gatcaaaacc      1260
     ctgaaagatc gcatctcggt tctggaacga tgcgacacca ccaacgacga atcaccaagg      1320
     caacaacatc aagccaagtc gaccactacc aatcaacctt accagatctc caacacagct      1380
     gtcacgtcgt ctccgagaat ctggtgcgat ttctgcaacg gacggcacct gaccttcaag      1440
     tgcactgcct tcagcggcct cacggtgcgc cagcgcatgc aggaggtcaa agaaaagcgt      1500
     gtctgcttta actgcctgcg cgcagggcac agcgtgaaga ggtgcatacg gacgagctcg      1560
     tgtggtaagt gccaacgccg acaccacact cttctacacg acttctacca gaagtcaacc      1620
     acactgcaga gaccagttcc tgctgtgcgc caaacgcaag aaccgctttc gccagccgaa      1680
     gtgatctgca atcccacccc catgctgcaa acagcgatcg tcaatctgcg cgacgacaac      1740
     aaccgacctg ttccgtgtcg tatcttgatt gacagcggat cgcaggtgaa ttttatttcc      1800
     aactcgatgg caacccgact taacctacga agagtagcgg taaacgttcc gatctgcggg      1860
     atcggaggag caacgttcaa cgccaaggaa acgatcaccg taaagcttca gtctcagcac      1920
     agcgatttct ccgctgatgt agagtgtttg attgttccaa aggtgagtgg gaagattcca      1980
     tcgttgccgg tcaactcgac cgattggcca attcccaagg gactgcagct ggctgatttg      2040
     aacttccaca ttccgggcag catagacatg ctcgtcggtg cctcctggtt cttccgcttg      2100
     ctgaaaggag gacacattca gctctgggac aactttccgg agctacgcga gactcacctg      2160
     ggctgggtag tcgttggagg tgcagaaggt gccatctctg gacagcagta cactcacaca      2220
     gctacgctcg acacccgagc agccatgttc ttgaaagtac ccgatcgacc ggaagaagtt      2280
     tcggctgggt cgtcccccag cccgggggga gga                                   2313
//
ID   BEL-59_CQ-LTR repbase;    DNA;    INV; 372 BP.
XX
AC   AAWU01004145;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_CQ_;
KW   BEL-59_CQ-I; BEL-59_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-372
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 272-272 (2011).
XX
DR   GenBank; AAWU01004145; Positions     394     765.
XX
SQ   Sequence 372 BP; 95 A; 91 C; 93 G; 93 T; 0 other;
     tgttggatcc ccaacctatc gaggaaaaat ggcaacactt gtcatcgtcg caatgtttgc        60
     tgcgatcgat gcaatctgtg ttcagcgcgc aacggcagcc gttgctgcga tcgacgacag       120
     aaaagggaga aggaagaggc gcgtgaaagg agtcgaccga gaagaagaag ttttctccac       180
     gtcagtctcg cgccaccagc aggaagaaca atttcgctct ctagttttag ctattattta       240
     ataaactagt atttagtgag aaactattga gtgcttcttt ccgacgccca cggccagtcc       300
     agagtccact ctttcgtctt ttcggaaaac aattccgccg ttttttcgtg gggccagtct       360
     gtggcccgaa ca                                                           372
//
ID   BEL-59_DTa-I repbase;    DNA;    INV; 8009 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8009
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (20-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are 100% identity to each other.
XX
SQ   Sequence 8009 BP; 2149 A; 2116 C; 1740 G; 2004 T; 0 other;
     tttggtcctt cgagccggat atattttcat cgttctccag ctaagtaatt ccaaagggtt        60
     tttcccatta tcatatatac atatatatat tttccgcaca accccgctcc accgctaagg       120
     tctcgtttcc gtgcggaaat atttatattt atatatctcc tttgatctcc acaactcttt       180
     gcactttccg tgcaattcca caaaaattaa aacacaaaaa ttgaacaaca tcacacatac       240
     ccatacacat acacacatat acatccatca tccatttttc acattgggtt ttttaaacta       300
     aaacactttg ccagcgccca cccgccaaaa atccatcaat tatcaacttt ctttgtaaat       360
     taaaacacac aaaacaataa caaaccaaaa attaaaagac aaaaattgaa caaaatcaca       420
     catatccatg cacatacaca catatacatc catcatccat tttttgttca cattgggctt       480
     tagattgaaa cactttgcca gcacccatcc gccaacaatc cattgttttt cagatttctt       540
     gtaaacataa ccagcacaca aataataaaa aagaaaaccc ggcatacgaa cattgctgca       600
     gaaccacctg cttggcatac ttgtcggacc ggcgagtcta agggtggcgg caaccgtttt       660
     ttgagtcttt ctccgcggca tcccgagtgg aaaacaaccc aataatcatt tagctgatat       720
     tttattaatt ttaattatcg tttggttgtt ttttttttgt tttgttttgc acattggtgt       780
     gtgtgtggca caccgggtgt cccgggcatt ccgtaccgca acacatcgta cagagtttat       840
     aacaggccgt tcacactaca gtgcatctgg gacgcaacaa gaaattcgat aaacttttca       900
     aacttagaaa taaaaataaa tataaataaa ataaaaaaca aaataaagaa caaaataaat       960
     ccttcaacag cgattcgatt cagttcagtt catatatttt tacaaatata tttatttcac      1020
     attccatcca agttacatat cgtacccact tacatttttg ggatatattg attcgtggta      1080
     aggttttctg gccagcatcc aaatcgttaa gcagaaacac attaaacagc gaccgcgtcc      1140
     acgtctccac ttaactcgat tcactttcca aacttaggaa gaaaaataca taattatgtt      1200
     gaagcgtttt gtccaaaaat aaaataaagc ctcaagcagc gttccgtttc cacgcgttcc      1260
     gcctcaattc cttctggtgc agtcatatat gcgccaagac atacatccag ttcacattcc      1320
     atccaattta tatatcgtac ccacttacac ttttgggata tattgattcg tggtaaggtt      1380
     ttttgaccag catccaaatc gttaagccga gacgcattaa acagcgacag catccacgtc      1440
     cctgttcctt ttccgtcagt gtaagtgcag gctcctactc gagcctacta tgccgattgg      1500
     tgaaggtgag gaacataaag ttcagttaac cgtcccatta gccagaacgc ccagccgggc      1560
     cagagccaaa agcgagtcgt cactacccac caaaaagaca gcccctagta aaagcttaac      1620
     tccatccata aagatcaacc gtccgtccag gacaacaagc gaaaagtcct taaccccttc      1680
     aaaaccagtg aaaacagctg cgtcacagct agttttgtcc tcgcaagtta ctagatcaac      1740
     tgcgaaaatg gcggaagctg aagctaaggc tgccttgacc aagtttgtgg ctgtgaccga      1800
     tagggtcagt cagttcgaag ctagggtcaa taccccaaca gacccacctc cgtctgttca      1860
     cactaataag gtcaggcttc agcagataca ggctctttgg gacaaagtag agaaagaata      1920
     cgagacgtgc tctgaggtta tttccgtatt aaattgtccc gacacgatgg aagtcatgca      1980
     agccaagtat gactactgct actctgtctt tgagcgatgc gctgcaacac taaacgaaac      2040
     gattgaaagg gcttgcgttc aaccgattca tgaaccgtcc acgccggtgt ctcagcctag      2100
     tggatgccgc gtacctccaa tagactgtga gattttcagt ggcgactatg ttcattggcc      2160
     gacgttccga gacctttttt ccgccatcta tgtccaaaat ccgaggcttt ccggcgttga      2220
     aaagttgttc cacctcaact cgaaaacgag cggagaagca aagtctattg tggcgttatc      2280
     accattgact aacgaagggt ttgagtccgc atggggaaat ctgcagactc gttttgaaaa      2340
     caagcgactg ctcgtcaaca gccagctaaa gatcctgttt aatcttccca ctgtttccca      2400
     agagtgtggc aattccctaa agcacctgga gagcactgtc caaggttgct tgacagcctt      2460
     aaaaatagct aaagtagaca caacaaattg ggactgcctt ctcgtctacc tgtgctcctc      2520
     aaagctgccg aagctgacat tggctctgtg ggaacagtcc ctcctcaacc catccgagat      2580
     tccagggtgg gaagaattca agaacttctt aaaaggtcgt catcgaaccc tggaggcaat      2640
     tgaagaattt aagcctacct tgaacactca atccagagct ccacgttctg aaggtgggcc      2700
     ccggattatc cataactttg aaaatagggt caccgtaaat ccacagtcgt gtaaactttg      2760
     tccaagagag aaccatccta tccgtctgtg tccccagttc ctaaatatgt cggttgccga      2820
     cagggaacag tgtattaaac aacagaaact ttgtctgaac tgttttgcaa gaacccacat      2880
     gttgagagac tgcacaagtt ctcacaattg ctatacgtgc aaaggtcgcc acaatactct      2940
     cctccatcgt agcggccctt cacagctcca gtccgcgtca gtacctgacc tccagccaga      3000
     aatacagtcc actccgtcga acgttcaaac gtacctcgcc gtgaatacgc aaggagtcct      3060
     cctgagtacg gcggtcatag agatctgcca cttgggcatc aggtactcag ctcgtgcctt      3120
     aattgactcc ggatccgagg cgacgtttat ttcagaacgg ttattcaacc taattaagct      3180
     cccctatgaa tccatacaag ctcaagtttc gggagtaaat caaactgttg ctgctcaacc      3240
     tcgtaagcgc tgccaattcc atataggctc ccccattaag ccacaaatcc aaatcgaagc      3300
     gtctgcatat gtgctaccac atttagccgg aaatcttcca tcctatacga tacccgaagg      3360
     gtcgttaagg gacctccctc ccgtacagtt agcagacccg aatttctacc agagttcgca      3420
     aattgacgtg cttataggcg ccgatatcct tccgtcgatt attttgggcg gcctccagtc      3480
     aaatgtttgc ggaacactcc ttggccaaga gaccatattc gggtggattc tttgcggccc      3540
     aatcgcgaag aatcccacta accgaatatc ttccttctca gcacggttgt ctgtcaccga      3600
     atctcaacta gacggcatcc ttaccaagtt ctgggaggtg gaggatgttc cagtgaagcc      3660
     gggcaaggaa tccagctcgg tgtgtgaaaa taacttccag caaaccacca caagggataa      3720
     agatgggagg tatgttgttt ctttgccctt taaagagcct aacaaaataa acctggggca      3780
     ttcacggtcc atcgcactgg cgcaattcct taggaacgaa gcacggttga gtaaaaacgt      3840
     tcctttgaga gagcagtatg actcagttat tcaggaatat ttagatttag gtcatatgca      3900
     cctagtctct ccaaaagacg actccagcaa tttttacttg ccgcaccacg cggttttcaa      3960
     gccagacagc accaccacaa aggttcgcgt ggtgtttaat gcctccaata aatcgtcaaa      4020
     cgggtacagc ctaaatgata tccttcatac aggtccggta ctgcaatctg atttgacaac      4080
     ccagatcctc aaatggcgtt tctttagata cgtcttcaat gctgacatca ccaagatgta      4140
     tcggcagatt ctcgtccatc ctgatcatac acggttccaa agaatcctgt atgccgcgat      4200
     aaagagggaa aactgtgtga ttatgagctc aacacggtca cttttggcgt taactgtgcc      4260
     ccctttctgg ccatacgcgt gctccaacaa ctgtcccagg atgtacgtga ccaatatcct      4320
     ttggcaagtg acataatttc gaactttatg tacgtcgatg atgttttagc tggcgcccac      4380
     acgcagcagt ccgctgtttc agccatcaaa gagctctgcg gtgccctcga gagtgcgggt      4440
     tttccactgc gcaagtggac ctcgaacgag aagaaacttt tacaaggtat tccaaaggag      4500
     gacttgatca gggccgactt tctggagctg gaagacgcca gtatggcaaa aactctggga      4560
     atccgttggc acgcgacatc ggatagtttc ttttttttgc cgatggatat ttctctccaa      4620
     acaacctaca ccaaacgaga ggttttatcc cagatagcca aactgtttga cccagcaggt      4680
     tggttatcgc cagttattgt tcgggcaaaa attttcatgc aagaaatttg gcttcgggag      4740
     ttaagctggg accagcctct tccggttgat cttgtcacaa agtggcgtga ctttcttaag      4800
     ggatatccaa cattaaaaga agttcgcatt ccaagatggg taaaatttca tccagacgca      4860
     aagctgcagt accacgggtt ttgcgatgca tcgcagagcg cctatggtgc tgccatcttc      4920
     gttcgcgtcg aaacgagtga tggctttttt acccaattgc ttgtatccaa aacccgagta      4980
     gctccagtaa agtccctttc cataccgcga ttagagctgt gcggtgcggt gcttctctcc      5040
     gaactcgctg cagcagttct ctccgaaatg cctcctactc agtatgagac atattattgg      5100
     acagactcca cgatagtgct tgcatggcta agcaagccag catgcacttg gactacgttc      5160
     gttgccaaca gagtcgcgaa agttcaccag ctcaccaaca gagaacagtg gtttcatgtg      5220
     atatcggaag ataacccagc tgacctggcg agcaggggcg tctcagtcca tgagctcagg      5280
     gacagcaacc tctggtggca cggtcctgag tggctgcgtc acaaccggga gcagtggcca      5340
     ctcaattcgt cggttccgct tgaaacagag ctcgaacaac gcccgataag atgtaacgtc      5400
     gccaaagcgc ctccgaaaac tgaccttttg gagcggtttt tagcattcga gagggcttta      5460
     cgcattctcg cgtacgtatt ccggtttgca agactgtgtc gcaaacaaga tgtcaacgta      5520
     aagtcggaac tcacagctgc agagctgtct aacgtccaag agaggctgat tgtgctcacc      5580
     caactcaatg agtatccaac agaatgcaag gcattaggca aaaagcagca tattccagtc      5640
     tccagcacga tctccaattt aaaccccttt gtcgacagcc atggtgtctt aagagcaagc      5700
     ggtcgtctac gagcatctga gatgctaagc tatgatgaga aacatccaat catcattccg      5760
     gcaaggtgca cttttgccaa acttttggtc ctctttaccc atcgcatatc cttgcatggg      5820
     ggtaatcaat tgatgatccg acttattcgc tccaagtatt ggatacccca gctgagaaat      5880
     ctggtaaaag tcaccattca tgcctgtcgg gtgtgcacca ttcacaaaca gaagctgcaa      5940
     actcagctga tgggggactt gccctgcgca agatctacat tttccagagc ttttacccac      6000
     acgggcgttg actttgcggg accatttgat attaaaaact atgtcggtcg agggtgcaag      6060
     ataacaaaag ggtatgtttg cgtttttgtg tgtttcagta cccgagccat ccacctagaa      6120
     gctacatcag acttgacgac tgaaaagttt ctggcggcct tctcgcgttt ctccgcacga      6180
     cgtggctgtc cgcaacacat acattctgac aacgggaaaa cgtttgtggg agcctccacg      6240
     tccctatcca aggacttcat tgaagccacg aggtctttga tcctatccaa ttacagcctt      6300
     caaaatgtga cctggcactt taaccctcct gccgcccctc atatgggagg gctatgggag      6360
     gccggtgtca aaagctttaa ggcacacttc tacaagcata cggcgggcgg gaagtacaca      6420
     tttgaagagt tagccaccct cctatcgaaa attgaggcct gtttaaattc gaggcctatt      6480
     tctccaatgt ccgaagaccc cacggacctc gtagctctca gccccggaca tttcctagtc      6540
     ggtgggccac tcctttccgt ggcggaaccc gagattaagg aaaaccccat ttccatttta      6600
     aaccgatggc ggcggctaaa ggccctgcat cagcaatttt gctcacgttg gaaagaagag      6660
     tacctaaagg agctccataa aaggactaaa tggcaatttc caacgcgaaa tattcagaca      6720
     ggggacatgg ttgtgctaaa agaggagaat ttaccgccaa atgaatggcg gcttgggcgt      6780
     atccaactgg tgtgcccagg cgcggatggc aagacccgag tggcagaggt tctaaccgca      6840
     cgtggcatta tccgacgacc aatcgcaaag atgatccgcc ttccgatgga ggcctccagc      6900
     tccgagtgat tctgccgttt tccttccttt ttttgggtta gcgactgaca gccaatccta      6960
     ctagtcttaa gttcctaagt tcatatcatt ctgtatcgtc agtcctcata catgtcacga      7020
     tcattcgcat catacatcac cgctaacttt tgtttactcg tttccccaga ctgttcacga      7080
     tggcgccaac cacgatccag cacgctcggc cacgcataac caacgggtac aggtgccgcg      7140
     tttgccgagg ggtgcacgca ctgaggaagt gccaacggtt cctccggctc ccggcggtga      7200
     agcggctccg cgcggtcctg atcaaccagt actgtgcgaa ctgccttgct cacgagcatt      7260
     ccggacaatc ctgccgcagt aaggccaagt gccacgtatg cagtgggaat caccacaccc      7320
     tcttgcactt ccaagagtcc acaacgccac gctcgtcacg accccaaggc cgacagcagt      7380
     cacgacccca aggacaacag cagcagagag cggcgtcgac gacgtcggtg cgctcatcat      7440
     cgccgaaggt ggtctccccg actcgaagcc ctgctacggg cccatcgtgc gccgctatcc      7500
     tgcagcgcac gagtgtgagc atcttgccaa ctgcatccat tttggtgggg tctgaggaga      7560
     aacggtttga cgtccgagct ttggtggatc cttgctgccc cgtgagtcgc attcacgcat      7620
     ctttggcaaa ggctctcaac ctttccgtca cccgcgtagg cgatgagcgg gtgtgcacca      7680
     ccgaaatccg ctcaaagtcg tcaaaaatga cccgacagct gctaatgctg gttgatgacc      7740
     agatgcagac ccgaactccg gccaagcccc tggatccgaa ggtccgggat ggctttcaag      7800
     acatcacttt ggctgacgac agatggttcc acccttccct agtgtctgct gttttgggag      7860
     ccgacgtgta cgcggaatta attctgccac gtatccgccc gagtcaaaac ggactgccca      7920
     tggcgcaaag ttcagccttg ggctggctcc tttcgggcac ttgctccctg gcttgattcg      7980
     ccactctccc cattgcgagg gggggagaa                                        8009
//
ID   BEL-59_DTa-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   20-AUG-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-59_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-220
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (20-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 100% identical to the other LTR.
XX
SQ   Sequence 220 BP; 61 A; 52 C; 49 G; 55 T; 3 other;
     tgttcatgtc gaackakgtc mgcatcgctg gttcggcatc actgggagcc gaaccggtta        60
     aaaaccatgt aggctaagct tgcgcctttg taatttagta ccgaataaaa agtgaaaccg       120
     aacagaagtg aagaaaccaa cccccgtctt tttttggaat tcagttttct ttgggagacc       180
     acacatttgg agttaccttt ggcaaggacc cgccccaaca                             220
//
ID   BEL-5R_DAzt-I repbase;    DNA;    INV; 5478 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5R_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5478
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 766-766 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. ORF is broken. It looks this
CC   family is a part of rRNA gene array.
XX
SQ   Sequence 5478 BP; 1352 A; 1347 C; 1287 G; 1492 T; 0 other;
     ttggtgaccc cgacgtgatt aaagacattg gctaatcgcg tttcgtataa aacatttaaa        60
     ttaaacatta ttcgggtctg tgaaatttga atcacaacca aatacattgt gcagcgttta       120
     aaacggttta tgtgcaaatt cagtgcgagt gcggccgtct gagattccgt tgctttaatc       180
     gttcgaatct ctcattctat gctcagccgc agacactgtc gttgactttt cgtgtctctc       240
     attctcgctc cagccgctgt tcaccgtcgc ataatcgtcg aatcctccat tctctgcaca       300
     actgcagcca cggtttcggc tttctcgtct tcacgttccc tttctcgatt ctatacgcag       360
     tcgcttaaac ggttatctat tctccgctag ttcattgcat ttcacaccgt taagtatgga       420
     aggcgatcta aatacaggcg cgggtggaaa tattgtgaca gctaataacg ggctgagcct       480
     ttataaacgc aaagttcagt cgttatatga tcgaatgagc gggctcggtg actccttcgc       540
     tggtgataag atcgattgtt tgaaccccac ggaaatcgac gttcgaattg aaatgctggc       600
     agaaattcga aaggagttta ataaggcgca caacgaactg aaagcactca atcaggacga       660
     gattgggagt gcgatgcgca acaactttga tacgctcttc atatcgttga aggctgctct       720
     cgaattaggc cactcgcgcg ctgctgccaa ttcgacgacc ctaccaaacc attctggaca       780
     cagtaccatc attatggctc acaagcagcg acttcctgag ctaaaaatac ccaagttctc       840
     cggtgaatac gtcgaatatt cggattttat ggctatgttc aattcgatca tagacgcgga       900
     tgcggatctc agtgacatcg agaagttcca gcaccttcgc tctagcctcg ctgatgtggc       960
     tttggattcg gttcgatctt tggaactctc cagtgccatt tatcgtgtgg cgctggatat      1020
     actaaataaa cgtttcagta ataaacgact tgtttttcag gcacacatca agaagattct      1080
     tgggctcaag agagtggatt cgccatctcc caaaaggctt cgggagtttt cggatgcagt      1140
     caacttacat atgcgcacct tgcagacatt gggaacggat ttcgagatat ccaattgcat      1200
     gataatcaac atgctgctgc agaagttgga cgctaagact caaattaagt gggaagaaca      1260
     actgtcgtcg gatgctatac ctacagcaat ggatttctat ggatactcgg agaagcgatg      1320
     ccagaaaatg gagaatttgg aatactctac agcggcaccc gctagcagcg ctcaggtggg      1380
     aaaaaaccat aatttgccgt tcaaaaaaac gtttgtagcc tccaattctt caaccgactc      1440
     gtctggatgc agtttttgcc agtcagcggg acatggcata tactcctgca agatgttcgg      1500
     gaatttgtcc ccgttgctgc gccacaagga agtgaagaag ctttcccttt gtttcaactg      1560
     aaggcagggc atcggactcg tgcatgtaac agtggaaaat gtcgagtttg cggtgggagg      1620
     catcatagtt tgttgcattt cgaaaatctg caatccacaa ctcagtgctc cccagatctt      1680
     tccgctccag atctaacgct ccaaccagac gctatttctg ccgctcagga ttctgttagc      1740
     agctcacctt cccctgcctc tacctctctt gctgcccaag gtcttcaatc tgatgttgtg      1800
     cttctggcta ccgctgtggt tcttgtaatc ggtctggcgt tttagttcct tgtcgtgcca      1860
     tactagattc aggatctcag cttcatctca tcacatccag gttcgcccat cagcttcagc      1920
     ttaggagaac tcaatcgtct gcacttgtct ctgggctcgg cgacaccagc gtggctactg      1980
     agggatccac cgtgaatatt tgtatgcatt ctcgcacagc tgactatgca actacgctta      2040
     ctgctcttat agctcctacc atcaccgatt gtcaaccaag tctggcagtc aatgtagccg      2100
     attggaatat tccatccaat attcagcttg ctgatcctgc atttttcaac cctcagcgag      2160
     tggatctcct catcggtgct agcattttct atgatctcct ctgcgtaggg caaatcgaac      2220
     tctgcgatgg tctgcctctt atgcagaaga cccggctcgg gtggatcgta tctgccggtg      2280
     gacaaagggt agcacgctcg gcgctcttgg caacgctcaa ttctaaagat tcggaagctg      2340
     acatggatgc aaggttggat aaaactcttc gtatgttttg ggaggtcgag gcttgtgcgg      2400
     acgccgtttt gaatacgaaa gaagaattag attgcgaagc gcatttcgta gaccacttct      2460
     cacgtttgcc atcaggagag tattcagttc gtctcccgtt aaaggataat ggcgatcgct      2520
     taggggaatc ctacactcag gcgcatcgtc gtttcatcaa tttggagcga aagttggatc      2580
     gtgatactac acttaaggag cggtactctg cctttatgag ggagtatatt gagttgaagc      2640
     atatgtcccc agtcaaccct gattctcgta gtcgctgcag atatttcttg cctcaccact      2700
     gtgttttaaa ggaggatagt acgacgacaa agcttcgtgt cgtttttgat ggttcggcag      2760
     ctacatcaac tgattctgtc cagtccgaag ttcaggtcta cacattagac accgtcaaat      2820
     atggcactag agctgcatcg tttttagcag ttcgcgcaat gcaccagctg gccattgacg      2880
     agggtgagtc ctaccccctt ggctcagctg ctctgcaaca agatttttac gtggatgatc      2940
     tcatctcggg cggcagctct gtcgctgagg tcatggaaaa gatgcgtcaa acctctacta      3000
     tactttcttg cggcaacttt aagcttagga aatggtgctc tagccatcag gaagtatttg      3060
     aaggaacgcc tgaagatgac agagagaaat acttaagatt tcatgatgga agtgacataa      3120
     cgaaaactct tggcctagca tgggaccctg catcagatca gctgcttttt gccttgtccc      3180
     cgctggacac aaattcgaag ccctccgagc gatcagtttt gtctacgatt gctcgtttct      3240
     acgaccctct tggattgata aatcccgtta ttgtcaggtg caaaatcttt cttcagcagc      3300
     tttggagaga aaacttcgat tgggatgaaa gcctaccctc agcgttgcat tcatcttgga      3360
     tggacttgag aaacagcttg tcagccatcc cgcggatatc atttcctcgc attgttcatt      3420
     cttctgctac tttaatcgaa cttcacggat tttgtgacgc cagcatggaa gcatatggcg      3480
     cttgcatata tgtggtgtcc agggaagggc agttgttgag ctatattttg tgctcaaagt      3540
     ctcgagtggc gccactaaaa acgtaatcga tccccaagct ggaattaagt ggagcccatt      3600
     tgctcgctaa actaatgact aatttaaagg acattggaag ttttacaggt cgggtttatt      3660
     gctggtcaga ttcatcgaca gcactatctt ggatacggga tgagccatcc aaatttcaag      3720
     tcttcgtggc aaatagagtg gcagcaattc aagagttgac ggcaggcatg gaatggcgct      3780
     atgttcccac atctttaaat cctgctgacg ttctctctag aggatcgctt ccccaccaac      3840
     ttatccagtc agagctgtgg tttcacggtc catcatttct ggtaggctcc aaggaagagt      3900
     ggcctttacc tcctgttcct gaagcagcaa cggcagagct tcgcaagcgt gtattgctga      3960
     tcgcgtctcc acataccgat ctcacttcag aatgcaaatt tacaaactca ttcttcggca      4020
     tgcagcgcac attcgcctac atgcataaat ttgttcatcg tcttcggcat tctggactca      4080
     ccgtttctga tattcggcag gaaacgcatc ttctaatccg acacattcag tctaacttgt      4140
     ggatggatat aaaggaaatt cgaggcaatg gtcaagtcag gaaatccagt tcaatcagct      4200
     cactctctcc gttcatcgat cagaatggat tactaagagt tggaggtcgt cttggaaact      4260
     catctctggg atttgatgct cagcacccgc ttattctgcc aaagggacat cccataactt      4320
     gtgctctgat aaggtactat cacgagagga accttcatgc tggaccccgc gcactacttg      4380
     ccaaaattcg actggaatat tggcccattg gcggaatcaa ggcagtatcc aaagtagtca      4440
     gcaagtgtgt gagatgcttc aggactaggc cgcgcatggt tcagcacatc atgggacatc      4500
     tgcccaagga gcgattggag ggatgtcgac cctttgaagt cactggagtg gattactgtg      4560
     ggcccttttt ctacagatca gaaatccgca cgaggccacc catcaagtgc tacatcagtg      4620
     tattcatttg ctttacttct aaggctatac acatggagct cgtaaaggac ctgaccaccg      4680
     cttcgttttt aggcgcatta aagcgtttca cttccacgcg aggaaggcca agtcaaattt      4740
     ggtccgacaa tgcgaccaac ttagttggcg ccaagaacga gcttttggag ctcaagaaac      4800
     tagctatgag cgactcgcat atcaaagagg tccatgaatc ctgcttggct gactcgatcg      4860
     actggcgctt catcccacca cgctctccgc actttggcgg attgtgggaa gctgccgtga      4920
     agacagcaaa acatcacctg taccgctcag ttgggccctc tgtgcttgac ttcgacgagc      4980
     tgcgcaccct gatctgccag atcacggcaa tagttaattc tcgccctttg ctctcacttt      5040
     cagaaaatcc tgctgattta gatgtcctga ctcctgctca tctgctttta ggtggtccac      5100
     acgagacaat cctcgagcct gacctaacga agctcaacta caatcgtctg gatggctggc      5160
     aacgggtcac tcaactgcag cagatattct ggagccgctg gcgcgaagag tatctaactc      5220
     ttttgcaaga gcggtcgaaa tggcggactc ccacgcaaaa tctttgcgta aacgatctcg      5280
     tgctgattaa ggacgaaaat cttcctccaa tgcgttggcc actggctaga gtggtcgagg      5340
     tcttcaaggg caaggatgga gtgagccgcg tcgctgattt aaggactgcc acaggaaccg      5400
     tcagaagggc cgttacccgg ctatgtgtac tgcccctcaa ggaatctgtt tgaagactgg      5460
     cttccaacgg ggggagta                                                    5478
//
ID   BEL-5R_DAzt-LTR repbase;    DNA;    INV; 355 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5R_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-355
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 784-784 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. It looks this family is a part of
CC   rRNA gene array.
XX
SQ   Sequence 355 BP; 95 A; 90 C; 76 G; 94 T; 0 other;
     tgttcgggcc agccgctaac caacaggcct aacttagaat acactttaga ataaaaggca        60
     ctgtaagcac cagcattcag cagcgctgct gcgctctccc tctgtaaagg gcgctctgca       120
     gccgccgctt cggctctagc ttatctagcc gacggtgcca attagtcagt aatctgctaa       180
     cctctctgcg cattggttgc atttggatct cggtcacgtt tatcaggttg tgctaagagc       240
     aagcaatcgg cttccgctat cagccgcttg tataaataaa aactattaaa tttggaacaa       300
     ttcggcttat tattttggac aaaataggtg ccaaaaaagc ttggcatctc aaaca            355
//
ID   BEL-5_AA-I  repbase;    DNA;    INV; 6233 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_AA_;
KW   BEL-5_AA-LTR; BEL-5_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6233
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 859-859 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4321-4905] - Integrase core
CC   'ATCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1138..5280
FT                 /product="BEL-5_AA-I_1p"
FT                 /translation="MVKPEEFKELKKQEKQLMGIIAGIARFVEKFQKGRHE
FT                 PQIDVRLETLEEAIKRFYSVRRKIELAYEDEDGAGEKIAENTRAEREKRER
FT                 QFEETFEAVQEQYFEVKTALIQLRPKVENSRPAGGNNAAETQPASRVKLPE
FT                 IKLPSFSGRIQDWTSFRDTFRSLIHNNQQLADVDKFTYLRSSTSGEALQEL
FT                 NSVELTGDNYEVAWKLLEKKYENKKLIVKALLDALFAVEPMRKESCEALNH
FT                 VISEFDKNLLMLNKIGEQTKGWSTILAYMVCSCLDSTTLRHWETHHNSKDV
FT                 PKFEDLMKFLRDQCAVLQSIAPAKAPAGDNSRHRMSTTHTSSQLQRRCEFC
FT                 GDSYHIPFKCGRLSNMTVAQRAVEINKKRLCRNCLTAGHFAEGCSRGSCTR
FT                 CGRKHHTLLHFEGSSSGGRQPKQSGPANSPPSGTQAPNRSNPAPAASQQQS
FT                 QQQNRSKPQGQTQTSTQPATQTQPTQAYPVIRSQDTHPQPTTNSQPAISLK
FT                 STGSSHSGGTTRQVLMSTAIVKVVDRFGNTALARTLLDSCSEFCYMTCSFS
FT                 RKLKFHEQRDFLQVQGIGNSSVTSTKAVEAIIEARSPSISSFGERMQFHLL
FT                 PKITQTLPLKPVRVELCEIPTEVLLADPTFGEPGPVDMIIGAEFYFDVLRA
FT                 GRRKLSESGPTLQETVFGWVVSGRVPETTSVMPTTASYVSTTVDLQDLIAR
FT                 FWELETCHVNRTHSVEETACEEMFNKSTVRDQEGRFVVTLPKKEHMLERLG
FT                 ESRNIAMKRFIGLERRFTMNAELKEAYKEFIHEYLLMGHMKEVDGEQPTAD
FT                 PVYYLPHHAVLRPDSTTTKLRVVFDASCKTSTGISLNDALMVGPVVQNDLI
FT                 STILRFRHHRIAVTADVAKMYRMVRVPEQDQHLQRILWRDTPEEPVKTFEL
FT                 LTVTYGTASAPYLATRCLKKLGEDSVSTHPIASRVVQEDFYVDDMLSGADT
FT                 VNQTRKLMNEVIELTNTVGFTLRKWNSNSAGLLSKLPKHLRDERTVLDLDS
FT                 SNATVKTLLTSAVRGKFWPVHINSLVRKVIHDCIPCFRNKPKVLEQIMADL
FT                 PSVRVNPAPPFMNVGVDYCGPFFVNYPNRRASPVKCYVAIFVCLVVKAVHL
FT                 ELVMDLTSQAFLAALKRFTARRGRPKLIKCDNATTFVGAKRELTELHRLFH
FT                 AQKFQDRLIKDTSSDGIEFRFIPPRTPNFGGLWEAQVKSFKGHFKKAIGTK
FT                 VLKVDEMLTALAQIEAVLNSRPLTPISNDPNDYEALTPGHFLGQRPLTAIP
FT                 ERDLQDVSTNRLDKWEDAQQVAQQVWSRWSTQYLSDLHNRTKWTKQRDNIR
FT                 VGMMVLLKDENAPPLKWHLGRVTKIFKGSDGNIRVVTVRTKDGCFDRGISK
FT                 VCPLPIRDNEDTQQLSSA"
XX
SQ   Sequence 6233 BP; 1517 A; 1725 C; 1728 G; 1263 T; 0 other;
     tatggtcctt cgaaccggat tcgaccggtg ggacttagta tcgtagtcag tgcaagtggc        60
     ggttaatctg agcccgccgt gaaagccgtt gattggcaat aaaaagtgca acaatcacgc       120
     tcctatcgcg aagagaaaaa ccattccgca gagccgggat agggtttgaa caaaagtgct       180
     actgttgtgt tgtgtacgaa ttcaaactcg cgccatcgaa acggctacgc gttccctgtg       240
     ttgggataga acgtagaaag aaagtgaatt gtgtgcaaac cccgccgtct aaacggccag       300
     cctatccagc agagatagag aaaaaagatt accgcgtgtg tgatatcgtc ggcattgtat       360
     cgccgttgtt cgatctcccc gacggtggag tacagtaatc cccccggtag tgcgttcaag       420
     tggggctgct gttcggcgaa ttatttcgcg aaattcggcc gacggcgatt atttgaagag       480
     gccgttggtg aagtgattgt aaaaaatcga ttgctgcgga gtgtccgacg gcacacatcg       540
     acgggggcca cctacggacg ggtggagcga gttgacggcg atcattggcg agtcgtcggt       600
     gcaggccagc ggcgaggaga aagctacgta atcatcctga ttgccgtcag ggaagtactt       660
     gcatggtttt tggggtggtt gggttgcatg agggttcgag taaatgagtg gaaaattcaa       720
     taaaaattga aattcgcttg agcgttttca tttctgggtt tgtggcttgg ttgggtttga       780
     tcgcccttgg aactagtgct tggccctttc tctggttcaa aaattgctgt ctttgtcatc       840
     gattcattct gtcgcttgtc aattcgctgg ctttcggtcg gtcgcgcgcg tccgttgagt       900
     gattaatccc agtagcagtg tctgcggtcg tgcggcgcat ggcgaataca gtgaagaata       960
     gtgaagtgca gtgatcaaaa actcttttca cagtactgct ggccagtgat aagtgacact      1020
     ctcggtgtgc gaaattgcac ctggacttgt gctgtgaact gtgaattgcc aaccggcaaa      1080
     agtgactatt tcccagcagt attgtgaagt tgtgggttac agaagcattc tgtgaagatg      1140
     gtgaagcctg aagagttcaa ggagctgaag aagcaagaga agcagctgat ggggatcatc      1200
     gctgggatcg cccggttcgt cgaaaaattc cagaagggaa ggcacgaacc ccaaatcgac      1260
     gttcgcttag agaccctaga ggaggccatc aagcggttct acagcgttcg gcggaagatc      1320
     gagctggcgt acgaggacga ggacggcgct ggggagaaga tcgccgagaa tacccgggca      1380
     gagcgagaga agcgggaacg gcagttcgag gagaccttcg aagccgtgca ggagcagtat      1440
     tttgaagtga aaactgccct cattcagctg cgtcccaagg tggagaactc acggccagcc      1500
     ggaggtaaca atgcggccga aacgcaacca gcgtcccgcg taaagcttcc ggaaatcaag      1560
     ctgccgagtt ttagcggaag gatccaggat tggaccagct tccgagacac attccgtagt      1620
     ctgattcaca acaaccagca actcgcagat gtcgacaagt tcacttacct gcggtcctcc      1680
     acctcgggag aagcactcca ggagttaaac tcggtggagt tgaccgggga caactacgag      1740
     gtggcttgga agcttctgga gaagaaatac gagaacaaga agctcattgt caaggccctc      1800
     ctggacgcac tgttcgccgt tgagccgatg cggaaagaaa gctgcgaggc gctgaaccac      1860
     gttattagcg agttcgacaa gaaccttctc atgttgaaca agatcggcga gcagacgaag      1920
     ggctggtcga cgattctcgc ttacatggtg tgctcttgcc ttgactcgac cactctccgt      1980
     cactgggaga cgcaccacaa tagcaaagac gtccccaagt ttgaagatct gatgaagttc      2040
     ctgagggatc agtgcgcagt gctgcagtca atcgcccctg cgaaggcccc cgctggcgac      2100
     aacagccgac atcgaatgtc tacgacgcac acgtcatccc agttgcagcg gcggtgtgag      2160
     ttctgcgggg attcctacca tatcccgttc aaatgcggca gactgtcgaa tatgacggtg      2220
     gcccagcgag cggtagaaat caacaagaag cgcctctgcc ggaactgcct gaccgctggt      2280
     cacttcgctg aaggatgctc cagaggttcg tgtacccgct gtggacgaaa acaccacacc      2340
     ctcctccatt tcgaaggttc ttcaagcggc ggtcgtcaac cgaagcagtc tggtcctgcc      2400
     aattctcccc cctccggtac gcaagcgccg aaccgatcga acccagctcc agcggcaagc      2460
     cagcaacagt cacaacagca aaaccgttcg aaacctcagg gtcagacaca gacatccact      2520
     caaccagcca cacaaacaca acccacacaa gcataccccg tgattcgctc acaagacact      2580
     cacccacagc ccaccaccaa ctcccaacct gcaatttccc ttaaatccac cggatcgtcc      2640
     cacagcggag gcacaacgcg acaagtgttg atgtcaaccg cgattgtgaa ggtggtggac      2700
     cgttttggca acactgcgtt ggccagaacc ctcctcgact cgtgctcgga gttctgctac      2760
     atgacctgta gcttctccag aaagttgaag ttccacgaac agcgggattt cctgcaggtg      2820
     cagggcatcg gcaacagcag cgtgacgtcg acgaaagcgg tcgaagccat catcgaagcc      2880
     cgaagcccat cgatttcctc gttcggggag cgcatgcagt tccacctgtt gccgaaaatt      2940
     actcaaactc ttcctctcaa accggtacgc gtggagctgt gcgagattcc cactgaagtg      3000
     ctgctagcgg atcccacctt tggcgagccc ggtcctgtag atatgatcat cggtgcggag      3060
     ttctactttg acgtgctgcg ggccggaaga agaaagttgt cggagagcgg tcccacgctg      3120
     caggagaccg tcttcggctg ggtcgtgtcc ggcagagttc cggagaccac aagcgtcatg      3180
     cccacgacag caagctacgt cagcacgacc gtcgatctgc aagacctgat cgccagattc      3240
     tgggagctgg agacgtgcca cgtgaaccga acgcattcgg tggaagaaac ggcctgcgag      3300
     gagatgttca acaagtcaac ggtccgtgat caagaaggca ggttcgtagt gacgctgccg      3360
     aagaaggagc acatgctgga acgcctggga gagtccagaa acatagctat gaagcggttc      3420
     atcggcttgg agagaaggtt caccatgaac gccgagttga aggaggccta caaggagttc      3480
     atccatgaat atctgctgat gggccacatg aaggaagtcg acggagagca acccactgcc      3540
     gatccagtgt attacctgcc gcatcacgcc gtgttgcggc ccgatagcac gacaaccaag      3600
     ctgagggtcg tgttcgacgc gtcgtgcaaa acctctacag ggatttccct caacgacgct      3660
     ctgatggtgg gaccggtcgt ccagaatgac ctgatctcca ccattctccg tttccgtcat      3720
     caccgtatcg ccgtcactgc cgacgtcgcc aaaatgtacc ggatggtccg tgttcccgag      3780
     caagatcaac atctgcagcg aatcctttgg agagacacac cggaggaacc tgtgaagacg      3840
     ttcgagctgc tcacagtcac gtacggcact gcgagtgcac cgtacctggc cacaagatgc      3900
     ctgaagaagt tgggagaaga tagtgtctcg acgcatccga tcgctagtcg ggtggtccaa      3960
     gaggacttct acgtcgacga catgttgtca ggcgcggaca cggtcaacca aacacggaag      4020
     ctgatgaacg aggttattga gctgacaaac acggtaggtt tcactctgag aaagtggaac      4080
     tcgaattcgg cagggctgct ttccaagctg cccaagcatc tgcgggatga acgaacggta      4140
     ctcgacctgg attcttcgaa cgcgacggtg aaaaccctgc tgacctcggc ggtccgtgga      4200
     aaattctggc ccgttcacat caacagcctg gtgagaaagg tgatccacga ctgcatcccg      4260
     tgctttcgga acaagccgaa ggttctggag cagataatgg ccgacctgcc gtcggtaaga      4320
     gtcaaccccg cgccaccatt catgaacgtc ggcgtggact actgcggtcc attcttcgtg      4380
     aactacccca accggcgagc aagtcctgtg aagtgctacg tggcaatctt cgtctgcctg      4440
     gtcgtcaaag ccgtccatct ggagctggta atggacctaa cgtcgcaagc cttcctagcg      4500
     gcattgaaac gcttcactgc ccgccgcggc aggccaaagc taataaagtg cgacaacgca      4560
     actacgttcg tcggtgcgaa acgcgagctg accgagctcc accgcctctt ccacgcccag      4620
     aagttccagg accggctgat caaggacact agttccgacg gcatcgagtt ccgtttcatc      4680
     cctccccgga cgcccaactt cggcggcctt tgggaggcgc aggtgaagtc cttcaaggga      4740
     cacttcaaga aggcgattgg caccaaggtg ctgaaggtgg acgagatgct gactgccctg      4800
     gcccagatcg aggcagttct caactcccgt ccactgactc cgataagcaa cgaccccaac      4860
     gactacgaag ccctcactcc agggcacttt ctgggccagc ggcccctgac cgctatcccg      4920
     gaacgagatc tccaagatgt ttccaccaac cggttggaca agtgggaaga cgcgcaacaa      4980
     gtggcgcagc aagtctggag ccggtggtcc acgcagtacc tctcggatct gcacaaccgc      5040
     accaagtgga ccaagcaacg cgacaacatt cgcgtcggca tgatggtcct gctgaaggac      5100
     gaaaacgctc caccactgaa gtggcacttg ggtagggtca ctaagatctt caaagggtcg      5160
     gacggcaaca tccgcgtcgt cacggtccgc accaaagacg gatgcttcga tcgcggaatc      5220
     tcgaaggtct gtcctcttcc catccgcgac aacgaagata cccaacaact ctctagcgca      5280
     tgaggcttac gccgattgcc gctccggtgc ttcggcacca tccatttctc gaagtcgtca      5340
     agtcacccca agggcaatcg tcgtaaaggt caagttgtat cgtccatgca tgttgtatat      5400
     gtcgtcagtc cgtagtcaat gtggtgaagg gttcggcgcc cacggcgtcg gcgttgacca      5460
     aagggtcatc gcgagaatca gaaaactcta atcacttcgt ctatcgccgg tagcaccacc      5520
     gctaccaact tttcccggag gaagccatgg taacccctcc accccgtcgt cgtcaactgg      5580
     ttggctctgg gcttggccag ctcatcctgt cggccagcat cccgatggct cgaagcgacg      5640
     aagtgatggt cacccgacca cagaagccct ccgcccgatc cggacactac cacccaggcg      5700
     cacactccac ggagaatcgt caggcaccat tcttgcctgg gtcggtaagt tgttccggtt      5760
     ttacagaaat ctatgtcagc ccactacatc atatctttcc cgaggaaacc atcaccacac      5820
     gaaccactcc acgcaccacg aaagacgaag gaagccaggc atcagccgat gcgctggtgt      5880
     acacggtcga gacccgacga gactctaccg atgaagccac ccgaagaaga agccgccgtg      5940
     cgtccggcac ggcaatcccg aaaaaggtca tccctaaccc caaggcagcg cacgtgagcc      6000
     gtagctcgac gtgtgtcggc gctgaaggcg cctcgaagca accgcagcaa cttagcagtt      6060
     cccaccccct cgcgcgagtg tggcgaggtc ctagtcgaca agggtcgacg aagttttgtt      6120
     ctagtaggga accttgattc caatttgtat tgttaggggt agttgtaaaa tagtatgtgt      6180
     agcaatgtat gttagtcttg tttgaaactc gtctggtttc aaggcggccg gca             6233
//
ID   BEL-5_AA-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_AA_;
KW   BEL-5_AA-I; BEL-5_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-351
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 860-860 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 351 BP; 89 A; 86 C; 81 G; 95 T; 0 other;
     tgttcggtcc aataattaaa ttgagaatca ctgttgatct ctttagatca ctttcgatct        60
     agctcccgct cgcgataaga gctatcgggt ctcgcttccc gagatccacc cgaaagcggg       120
     tctaatgttt atgtatatta gcaataaaat cagttttgca ccaactttca aacagacaag       180
     ttgtgtctcc ctgtcggtcc gcgaaataaa gttgttgagt cccagtacgc cgcgttgtga       240
     ttacttgtga gaaaggtcag tgatcggagg tcgaggtcaa ggacctcggg aacacccgtg       300
     ttttgggcgg acccatctat acagtccact cccaaggttc gcgccaaaac a                351
//
ID   BEL-5_AnFu-I repbase;    DNA;    INV; 5916 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5916
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 663-663 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..5501
FT                 /product="BEL-5_AnFu-I_1p"
FT                 /note="PHD finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MTTPFVDNKNGHCRLCVMPDDEDDMIACDECDRWFHI
FT                 KCTKLKIKPGVDTPWICIKCTTDRIKYASKSAENVTMLELVKALQQTTLQG
FT                 QTQLKRSTLLNLPYFDGKSRDWPKFKQAFDETTREAQFSSLENLNRLQRFL
FT                 KGDAERAVRSLFLDPDNIPKILERLEEQFGRPDQVYQEMLKDVLRIKIDNQ
FT                 FKIPELSDALENLITNMKVLNKSEYFRDQRLINELVSKFSTDKQIRWLEHK
FT                 TEVEKGNRVVTLEDLSDWLVPWARNLRQLVNKSDRTRNPINFHRDFKNQRK
FT                 GNVRTAAPIVENIEVASKTVRNSRDYTADNNKTLQGQSKSVINNRHESTND
FT                 RAFSKQKPPXTAKRSSKHPAVSAKFEKQQQHASVWPNPSSSNSTITKQKMR
FT                 TEQPSTMSTQQEKFQSKNDKENCIDKFELKNEADTFESTQSSQQVYYQIVP
FT                 VTLRNGNIXVKTFAFLDGGSSLTLIEETMAEKLNLQGPKNPFIMTWTRDLH
FT                 VQEDESRIVRCQIKGNSEKXEFLLDGIRTIHNLQLPRQTIDAKRMAKAYPH
FT                 LALLQKRKLVTSFTDAYPTVLIGLRHSHLMIPYERKMGGPNEPMAIRTKLG
FT                 WVIFGTEEDQELGDTEHLMIHQNEEIMNQMIRQYFSIENFGVKCVEPVRSN
FT                 DEERARAIIQQTIRKENGRYEVGLLWKHDEPKLPNGRNNAVNRLRSLEKQL
FT                 TKNPDLKNWAQKTFEEYVEKGYIRKLTAHEEAAKTSKTFYLPHFIVVNRNK
FT                 PTPKPRLVFDAAAKVNGVSLNSLLLTGPDEMASLFGVLVRFREGNVCVTGD
FT                 IQEMFHQIKVRREDQDAQRILWRNCEEREPDTYVMQVMTFGATCSPACAQI
FT                 VKNTNAEEHKETHPYAFNPIIRQHYVDDYLDSFHTLDEAITTVREVIEVHQ
FT                 NGGFHIRNFTSNKCELLNKIPIERVQKRNEVVNFEEKNAEFEKILGVQWHT
FT                 STDRFMYKVNFTNIDVHKNPTRREALSCVMRMYDPLGLISHLTIQGRILMQ
FT                 AITTASDSWDEPIPNKLEAKWKEWLKLVCSAEQVSIPRQIVAPSCNVAELH
FT                 TFVDASEEAFAACVYARSWSGSSYVVRLVAGKSRVAPIKTLSIPRLELQAA
FT                 VLGTRLTEAVKKELRIGVERTVYWSDSSTVLAWINSNHRKYHQFVAHRISE
FT                 ILDSSSVNQWRWVPSKQNPADLATKLSNDEVMWFNGPNFLKNNEDDWPQKI
FT                 PISTTDEEKRVVAIHRVINSVIPEEHYSSWEKLLSHSIYMKKYIDYLRDKK
FT                 NFTKSINLQDVISTRNALYRKAQWEGFPEEMTSLTKGEPVSRKSSLNKLAP
FT                 FLDENGLMRSRGRLENLTFLTNDARTPILLPQKPRIVKLIVRHYHEINLHQ
FT                 ADNVVITALRQRFWVINLRAVLKNVKACCQRCILRTAAPRSPMMAPLPAFR
FT                 ANPYKPPFLHTGVDYFGPIEVSVRRSTEKRWGAIFTCMSTRAVHIEVAEKL
FT                 DTDSFLVCLKNFQHRRGKITHLYSDNGTNFVGAEKELSQLLQEIDRRMGKE
FT                 AALKYDIQWTFNPPAAPHFGGSWERLIQTIKKALRFMFEQWNLRKPTPETL
FT                 RATLIQIEAMLNSRPLTHIPVTCMEDEVLTPFHFLIGRAVDEVPPFADVPS
FT                 GVNRKQWKLVQHHAKIYWDRWKKEYLPTLIRRNKWTDKIDPLKVNDVVVLT
FT                 DDNAPPGKWLKGRVLKTFEATDGQVRSVEIQVGETVLTRPAVKVAAVDVRQ
FT                 KEHLLSHSLARHKPPIKRGRDVSDKASIQHHPPPKRRIAPCSWATKL"
XX
SQ   Sequence 5916 BP; 1928 A; 1334 C; 1308 G; 1342 T; 4 other;
     ttggtggctc cagagaggac actcacctca tctctcacat agagagaaac aagctcacag        60
     gaagcttacc ccatctctca catagagaga aacaagctca caggaagctt accccatctc       120
     tcacatagag agaaacaagc tctattttgg gtgttgaaat taggatattt tacactattc       180
     agaaaatttg agcttgcatc atgacaactc ctttcgtgga taacaagaat ggccattgcc       240
     gtctctgcgt tatgccagac gacgaggatg acatgatcgc ctgcgacgaa tgtgatcgct       300
     ggttccatat taaatgcacc aagttgaaga ttaagccagg cgttgacact ccttggattt       360
     gcattaaatg cacaactgat cgcataaaat atgcatcaaa atcagctgaa aatgtgacca       420
     tgttggaatt ggtcaaagct ttacagcaga caacccttca agggcaaacg caattgaagc       480
     ggtctacgct gttaaactta ccgtacttcg acggaaagtc gagggactgg cccaagttta       540
     aacaagcgtt cgacgagacg accagggaag ctcaatttag ttccttggaa aatctcaatc       600
     ggctgcagcg cttcttgaag ggcgatgcag aaagagccgt acgatctctt ttcctcgatc       660
     ccgacaatat tccgaaaata ttggagcgat tagaggagca atttggtcgg ccagaccaag       720
     tgtaccagga aatgctgaaa gatgtgttaa ggatcaagat tgataaccaa tttaaaattc       780
     ctgaactttc agacgcctta gaaaatttaa taaccaacat gaaggtttta aataaaagcg       840
     aatattttcg tgatcaacgt ttgatcaatg agcttgtcag taaattttct actgacaagc       900
     aaattcgctg gctggaacat aaaactgaag tggaaaaggg caatagggtt gtaacgttag       960
     aagatttgag cgactggttg gttccttggg caagaaactt acgacagtta gtaaacaaaa      1020
     gcgaccgtac acgtaacccg attaattttc atagagactt taaaaatcaa agaaaaggaa      1080
     atgttagaac cgccgctcct atagtagaaa acatagaagt tgcaagcaag acagttcgta      1140
     actcacgtga ctacacggcg gataacaaca aaactctgca aggtcaatcg aaatcggtca      1200
     tcaataatcg tcatgaatca acgaacgacc gtgcattctc caagcagaaa ccaccascta      1260
     cagcaaaacg ctcttcaaaa cacccggccg tgtcagcaaa gtttgaaaaa caacaacaac      1320
     atgcctctgt ctggccaaac ccatcttcaa gcaactccac tataacgaaa caaaaaatgc      1380
     gcactgaaca accatccact atgtcaactc agcaagaaaa gttccaatcg aagaatgaca      1440
     aagaaaactg catcgataaa ttcgaactca agaatgaggc ggacaccttt gaatctactc      1500
     aatcgagcca gcaagtgtac taccaaatag ttcctgttac cttacgaaac ggaaatatca      1560
     scgtgaaaac cttcgccttc ctggatggtg gatcatcgct aactctgatt gaagagacca      1620
     tggcggagaa gcttaaccta caggggccca aaaatccatt cataatgact tggacccggg      1680
     acttgcatgt gcaagaagac gaaagtcgaa tagtccgatg ccaaataaag ggcaattcgg      1740
     aaaagastga attcctccta gatggaatcc gaaccatcca taatctacaa cttccacgtc      1800
     agaccatcga tgccaaaaga atggcaaagg cctatcccca tctcgccttg cttcagaaac      1860
     gtaaacttgt tacatccttt acagacgcat atccaaccgt tcttatagga ctgaggcata      1920
     gtcatcttat gattccctac gagcgtaaaa tgggaggccc gaacgaaccc atggcaattc      1980
     gaaccaaact tggatgggta atcttcggca cagaagaaga ccaggaacta ggtgacaccg      2040
     aacacctcat gatccatcaa aacgaggaaa tcatgaacca gatgattcga cagtactttt      2100
     ccatagaaaa cttcggagta aaatgtgttg aaccggtaag gtccaatgat gaagaacgcg      2160
     ccagagccat tattcaacag accataagaa aggaaaacgg tcgatatgaa gtaggtttgt      2220
     tatggaaaca tgacgaaccg aagctcccga atggacgtaa caatgcagta aatcgtttac      2280
     gtagcttgga aaaacagctg acaaagaacc cagacctcaa aaactgggca caaaaaacct      2340
     tcgaagaata tgtagaaaag ggttatatcc gtaaactgac cgctcatgaa gaagcagcaa      2400
     aaacatcgaa aacattctac ctgccccact ttatagtagt aaatcgcaac aaacctacgc      2460
     ccaagccgcg tttagtattc gacgcggcag caaaggtaaa cggtgtctct cttaactcgc      2520
     tactcctaac cggtccagac gaaatggctt cactattcgg agttctagtg cgttttcgtg      2580
     aaggaaatgt gtgtgttact ggtgatatac aagaaatgtt tcaccagatc aaggttcgtc      2640
     gcgaagatca agacgctcaa cgcattctgt ggcgtaattg tgaggaaaga gaacccgaca      2700
     cgtatgtgat gcaggtgatg acgttcggag cgacttgttc tccggcttgt gcgcaaatag      2760
     tgaaaaatac aaacgcggaa gagcataagg agacacatcc ttatgcattt aaccccataa      2820
     tacggcaaca ttacgtggac gattacttgg acagcttcca caccttggat gaagctatca      2880
     ccaccgtgcg tgaagtaatt gaagtgcatc agaatggagg tttccacatt cggaatttca      2940
     cctcaaacaa gtgcgaacta ctgaacaaga tcccaattga aagagtgcag aaaagaaatg      3000
     aagtggtgaa tttcgaggaa aagaacgctg aattcgagaa aatattaggt gttcaatggc      3060
     acacatctac ggatcgtttc atgtacaaag tgaactttac taatattgac gtacacaaga      3120
     atcctacaag acgtgaggct ttaagttgtg tcatgagaat gtacgatccc cttggcttaa      3180
     taagtcacct aactatccag ggcaggatcc tcatgcaagc tataactact gcgtcggact      3240
     cgtgggatga gcccattccm aacaaactgg aagctaaatg gaaagagtgg ttgaaactag      3300
     tgtgcagtgc agagcaagtt agtatccctc ggcaaattgt ggctcccagt tgtaacgtag      3360
     cggaacttca tacattcgtc gatgcatcag aggaagcatt tgctgcatgt gtgtatgcca      3420
     gatcgtggtc aggctcgtca tatgtcgtca ggctggtagc aggtaaatca cgtgttgctc      3480
     caatcaaaac tctctccatt ccacgtctgg agttgcaagc tgcagtgctg ggcacgcgtc      3540
     taactgaagc agttaagaag gagcttcgaa tcggcgtaga acgaacggta tattggagcg      3600
     attctagtac agttctggca tggatcaaca gcaatcatcg gaagtatcac caatttgttg      3660
     cccaccgcat cagtgaaatt ttagattcct cttcggtaaa tcagtggcga tgggttcctt      3720
     ccaaacagaa cccagccgac cttgcaacca agctttcgaa cgatgaagtt atgtggttca      3780
     acggaccaaa cttcctgaag aacaatgagg atgattggcc gcaaaagata cccatatcta      3840
     ctactgatga agagaaacga gtagtagcta tccatcgagt aattaattcg gtaataccag      3900
     aggagcatta ttcatcatgg gaaaagttat tgtctcattc gatctatatg aaaaaataca      3960
     tcgattatct gcgagataag aagaacttca cgaaaagtat aaatctccaa gatgtgatct      4020
     cgaccagaaa tgccctgtac agaaaagccc aatgggaagg gtttcccgag gaaatgacgt      4080
     cccttacgaa gggggagccc gtcagccgta aaagttcgct gaacaaacta gctccatttt      4140
     tggatgaaaa tggattgatg agatcgcgag gtcgtttaga aaatctcaca ttccttacca      4200
     acgatgcaag aactccaatt cttcttcctc aaaagccccg aatcgtcaag ctaatcgtgc      4260
     gccattacca tgaaataaac cttcaccaag cagacaacgt ggtaattaca gctctacgac      4320
     aaagattctg ggtaattaat cttcgagcgg tgttaaagaa tgttaaagca tgctgtcaaa      4380
     gatgcattct tcgaacagct gctcctagat ccccgatgat ggcaccactt ccagcattca      4440
     gagcaaaccc gtacaagcct ccatttcttc atacaggagt cgactacttc ggtccaatcg      4500
     aagtaagtgt cagacgttct actgagaaaa gatggggagc aatcttcact tgcatgtcta      4560
     ctagggcagt gcatattgaa gtagccgaaa agctagacac agatagcttc ttagtgtgtc      4620
     tgaagaactt ccaacatcgt cgtggcaaaa taacacacct gtacagcgat aacggtacca      4680
     atttcgttgg agccgaaaaa gaattgagcc agctgttgca agagatagat cgcagaatgg      4740
     ggaaagaagc ggcattgaaa tatgacattc aatggacttt caatccaccc gcagcaccac      4800
     acttcggagg atcatgggaa cgattgatcc aaacaatcaa aaaggccctt agattcatgt      4860
     tcgaacaatg gaacctccga aagccaacac ccgaaacctt gcgcgccacg ttaattcaga      4920
     ttgaagctat gttgaactcg agacccttaa ctcacattcc ggtaacgtgt atggaagatg      4980
     aagtgttaac gccattccac ttcctaattg gcagggcagt ggacgaagta cctcctttcg      5040
     cagacgttcc gtcaggtgta aatcggaagc agtggaagtt ggtacaacac cacgccaaaa      5100
     tatattggga tcgatggaag aaggaatatc ttcctactct tatccggcgc aacaaatgga      5160
     cggataagat cgacccatta aaagtaaatg acgtcgtcgt ccttaccgac gacaacgcgc      5220
     ctcccggaaa gtggctaaag ggacgagtac ttaaaacttt tgaggcgaca gacggccagg      5280
     ttcgctcagt ggaaatacaa gttggagaga ctgtactgac aagaccagca gtaaaagtcg      5340
     cggcagtgga tgtacgccag aaagaacatc tcttgtcaca ctcattggca aggcataaac      5400
     cgccaataaa aagaggacga gacgtcagtg ataaggcttc tattcaacac caccccccgc      5460
     cgaaacgacg catcgcccca tgctcatggg ccacgaaact gtaatttacc acatcctcag      5520
     cgtcttatgt tcatcccccg catacgagta cagcccatca cccaaggagg attcgtgttt      5580
     acacatcttg gaacccgttt ggtacgtcga tcatgcccta catgattcgg tggccatgat      5640
     acaccaacag acgatagctg ctgaacgtga gatcgggtac gtagcacgag gctagcgtag      5700
     ggtagaacgg agcggcggat tattaggtat ggtaaaggga ttgatattcg gtagagacga      5760
     cggggaagat gaattgcatc gtatgaaata tcgaaaaatt agaaataaaa atcgcggaac      5820
     attacctaac ccaacggaac aacccaaacc caagttcaaa ccaccgttta agcagcgaaa      5880
     taaggtaatc ctaggatcga attacgaggg ggagaa                                5916
//
ID   BEL-5_AnFu-LTR repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-681
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 711-711 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 681 BP; 183 A; 157 C; 171 G; 169 T; 1 other;
     tgttgggtgc ccaacgcgcg cataaacggt tcgttgcaaa aaagctcaag cgtagcgttt        60
     tttggtaaca cacgacgtgc gtatgaacgg cgtaagccac ctttcatgta ggttgcttac       120
     aaaacattcg taacgccaca gaagcgctga cgctttccaa aacattctgc accgcggaag       180
     cgctagccgt cggcgtacgc gaggcatggc cgttctagta cgtcgtcgta agtaggttag       240
     ggttcctacg ttcaggttcw ggttcagtta cgttcatagg aagtaaataa caaataggaa       300
     gtaagtaaca aataggaagt aagtaagcaa aataataata agttaagtta agcttgtaaa       360
     ccaattcttg agtatataag gagtgctcgc actcgaaata aattaattgc aaaccagaac       420
     tagagagttt ctcttcagct ttcaagcttc caggtttcag ttcacccggg acggctcgaa       480
     gtgttggcaa cccaactccc ccctcttgcg gcataggttc tcgatcgcga agaacaacta       540
     gcggagaggt ttgtcatttc gacttgggag acgggatcat caacagcgtt cgagttcgct       600
     ccccatcggt tgacggttgg ggctaaggtt cagagtggcc atttccttcg cttggtcgaa       660
     cctgtagtcc gccgcgcaac a                                                 681
//
ID   BEL-5_BTa-I repbase;    DNA;    INV; 7236 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7236
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 592-592 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~97% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           474..6104
FT                 /product="BEL-5_BTa-I_1p"
FT                 /translation="MLPTFSQAKFELGVRTCSADNIMDSEYAKFLRSEFEY
FT                 PLSKLNRERGGVEQQQPLINIFDSDSDTLLIENRELEKVNKSTFAAPNRDF
FT                 SGSPLIPSPSSVYASAENNSKHSFLNRKRDCILEEAVTILENSKNITPDNY
FT                 ESFEFRVERLKKLQDMFDQIQSEILETGASKEDIIDYQRKFSAISDEAQSL
FT                 FFKAKKGLNNACSAKFNSSAAASRAHLKLPKIKLPRFNGKNLSDWSVFQGL
FT                 FEATIHNSTALSNNEKFQYLLAQLDDEPLRLIKNLELTSDNYLVAWKLLVD
FT                 YYRNERRLLTHHLISLLDLPELTATNLSLFYSKIKENMQALEALGLKPENY
FT                 CSLLVVVLLRKFNNYHKRRFEDFRDEKTKMPTVEEICEYLHTEISQFSESE
FT                 QNRQKPNQKCQKPVTGPPVRALQVGNLDESSRTEKFKPSTNINGNNSKPGN
FT                 SLSPYFKCVQCQPNPNHATAQCRKFNNMSAEARRDLVVQHRLCFNCLSNSH
FT                 GVKDCKSKKCSICSKSHHTKLHVAQNTALPTQMYQHTPASEKSVLGKMDPT
FT                 STLSSSSHQNNVNVTCHVSETRQCTAILPTIQVLLTAKNGRTLLARAILDC
FT                 GADQGILRAECCQKLKLKPNLNGSSVSGLSETPVETKGSVEITISTPGGKV
FT                 VAPDYPMTVVKNITGLLPSVPLDPKLKKLLRNYPLADETFDAPGKPDLLLG
FT                 IDLYAVIVTGGPITLGPSLPALIPTIFGYVVIGKSFNPLPSMHSEPLRPPE
FT                 CTSSTVLVCCNIQSQVENFWKMEEADPPLARKPEDEFAEKFYQETTIQLPN
FT                 KKYQVRLPFRPQASHLGESRSIALKRFHQLEARLQKNPRLKEMYVKFMSDY
FT                 LENGYMKPVPTPSTEVPHFYMSHHGVINETSSTTKLRTVFNASMKTSNGLS
FT                 LNDLLLPGPSLLEEIPTILLNFRRHRTVFSGDIKQMYLQIELAPCDHLYQL
FT                 ILWRSEPYLPLQTYALTTVTFGVNCSPFLAIRTIKKLIEDHGHKYPRAAKA
FT                 LYASLYMDDLIHGERDERKARELLEEVILLLEEGGFFMRKWTSNSQYVLEG
FT                 FPIGDLEMPKGNPEDPQHKILGIQWSPEKDAFTYKIISMPAPTTKRSLLSL
FT                 IASIFDPCGWLTAVIFKVKVFMQELWLISVDWDDPLPKEVIFKWENFVDQL
FT                 PCLSKISIPRLIDTEGRKVQVCCFCDASEAGIASLMYVRIPPLPSEENHKA
FT                 KIQLVFGKSKVAPLKKISIPRLELCAALLSATLIKKYVPKLKEFFGVEQIF
FT                 SWSDSTIALTWIQTPSYRLKTFVSNRVVQIQELKEKVIWKHVEGKDNPADL
FT                 ASRGLLPKEILQNYFYWEGPQWLKEKIEKWPESITTLPSSQKLPELKVISP
FT                 TLIVKQIEQEIKDEEIKIPHLSTWTKTINAMAYVRRFLVRKILLVDNIKKL
FT                 EKIKTGKFTAEELQLAETKTLLLIQKDSFRGERLLIEKGERLPSKFNAVKR
FT                 LTPFLDPNGLMRAGGRLAHATVPESVRYPLLLPSRHPLVKLLVVHYHRKNL
FT                 HAPSQLLQSLLRQKFWILAARRLTRMVVNECIACFRVKPSSVSPPLMGNLP
FT                 ATRVQQSPPFFKTALDFCGPFQVKIHQTRFARVFAVYVCVFVCMSVKAVHL
FT                 EMVSNLTTDAFVAALQRFVSRRGLPSYIYCDNASNHTGAANRFLKLISGTE
FT                 PELVHFSVNNKVEFHFNVPMGPHLGGLYEAAVKSFKYHFKRVCGLTVLTQE
FT                 EFQTLTSRIEAVLNSRPLTPLSSDHRDLQVLTPGHFLIGRPLSSLPEKKYD
FT                 IENPPFLQRWTYVEFFAQAFWERWHFEYLHTLQERSKWLEVTKSIKEGTLV
FT                 LIHDAQAPPLTWKRGRIAKIFPDPDGHVRVAEVITATGMLRRPVIKLYPLP
FT                 IMSP"
FT   CDS           join(6123..6512,6455..7111)
FT                 /product="BEL-5_BTa-I_2p"
FT                 /translation="MEKNGFLSLPTPSKDELPLPTPSKDELSLPTPSKDER
FT                 SLPTPLKDGFPLPAPSRHQSPVPNPSENELPKSGPDKTEASTPFGKKEDDP
FT                 NAKYRGLDRHSNFALTATLAFDDLYYRNHMAIIKNIEREKRESVLQKSHGH
FT                 YKKYRAGKKGIKSKAPSPILHSFPPKFLVKVYPNLTLVLFGYCFSMQRSRS
FT                 YRTRILKRWRAVMKCPICLFTAEPPFELCSNGHRICHQCRVRLQSCPICRV
FT                 SLAKNVKDRAMEELHKALRPPPTDRNVLNEDSEEEEEAERREDWRVLERAR
FT                 PQRREEERHEARQEQMGLESLSVEALAERIEAIKLTLPRHLWAVARLNPGG
FT                 GAILDI"
XX
SQ   Sequence 7236 BP; 2214 A; 1428 C; 1519 G; 2074 T; 1 other;
     tggtccctcg ttcgcggata ttttcgaccc agaattgagg aaataatact tgtggaaaag        60
     agcagcctcg agataacctc aaccccgctc ccctgccaag tcccaattcc gattcctgag       120
     tcttgaaccc agccctgtgg aagcagtgtc ccctgtccag agctgtcaat ttcgccctga       180
     cctcgcaatc ctagctagtg ttacctgatc ctaactcact tttggtgata ttcttccatt       240
     ttttcttttt tcattttttt gtgaaaattt tttcctaacc tcaaagggga tttttatatt       300
     atttcttcat aaccttcaac aattgattca ttgccgtagt aactagatct ataaattgag       360
     aacagctgtg attataaact gtgtcatttt ccgaccgaca ttgagagttg ccggttttta       420
     tttttaaaaa aaaaaaaaaa caaactgtaa tttcttttga ggttaagaaa taaatgctac       480
     ctactttttc acaggcaaaa tttgaactgg gggtgagaac ttgcagtgcg gataacatta       540
     tggattctga gtatgcaaaa tttcttcgta gtgaatttga atatccattg tcaaaattaa       600
     atcgtgaacg tggtggagtt gagcaacaac aacctctaat taatattttt gatagtgatt       660
     ctgatactct tctcatagaa aatcgagaat tagagaaggt aaataaatcg acctttgcgg       720
     ctccgaacag agatttttca ggttcaccac ttattccttc cccttcttct gtttatgctt       780
     cggcggaaaa taatagtaaa cattcatttt taaataggaa aagagattgc attttggagg       840
     aggccgtaac tatcttggaa aattcgaaaa atataacacc tgataattat gaatcatttg       900
     aatttagagt agaaagatta aagaaactcc aggatatgtt tgaccaaatc cagagtgaaa       960
     ttcttgaaac aggtgcctcc aaagaggaca taattgatta tcaacggaag ttttctgcaa      1020
     taagtgatga agctcaaagt ctatttttta aagcaaaaaa agggttgaat aatgcttgct      1080
     cggcaaaatt taattcttcc gcggctgcat ctagggctca tctcaagttg ccaaaaatta      1140
     aattaccgag gtttaatgga aagaatctat cagattggtc agtgtttcag ggcttatttg      1200
     aagccacaat tcataattca actgctttaa gtaacaatga aaaattccaa tatttgctgg      1260
     cacagcttga tgatgaacct cttagattaa ttaaaaattt ggaacttact tcggacaact      1320
     atttagtggc gtggaaatta ttagttgatt attaccgtaa tgaaagaagg ttgttgactc      1380
     accatcttat tagtctttta gatttgcctg aattaacagc tacaaattta tctctttttt      1440
     attctaaaat aaaagaaaac atgcaagctt tggaagcttt gggattgaaa ccagaaaatt      1500
     attgctcatt gttagtagtt gtattattga gaaaatttaa caattaccat aaaaggaggt      1560
     ttgaagattt tcgggacgaa aaaacaaaaa tgccaactgt ggaagaaatt tgtgaatatt      1620
     tgcatacgga aatttctcag ttttcagaga gtgaacaaaa taggcaaaag ccaaatcaaa      1680
     agtgtcaaaa acctgtcact gggccaccag tgagagctct tcaagttgga aatttagatg      1740
     aatcttctcg tacagaaaaa ttcaaacctt ctacaaacat taatggtaat aattcaaaac      1800
     cggggaattc gctatcaccg tactttaaat gtgttcagtg ccaaccaaat ccaaaccatg      1860
     ctacggcgca atgtagaaaa tttaataata tgagtgctga ggctagaagg gatttggtgg      1920
     ttcagcacag actttgtttc aattgccttt ctaactctca cggcgttaaa gactgtaaga      1980
     gcaaaaaatg tagtatttgt tctaaaagtc atcatacaaa attgcacgta gctcagaata      2040
     ccgcattgcc tactcagatg taccaacata ccccagcatc ggagaaatca gttcttggaa      2100
     aaatggaccc tacttcgact cttagttcct cctcacacca aaataatgta aatgtcactt      2160
     gtcatgtgag tgaaactaga caatgtacag cgatccttcc aacaattcag gttttattaa      2220
     cggcaaaaaa cggccgaacg ctgttagctc gagctattct cgactgtgga gcggatcaag      2280
     gaattttaag agcggaatgt tgtcaaaaat taaagttgaa accaaacctt aacggctcat      2340
     cagtttctgg tttgtcagaa actccggttg agaccaaggg atctgttgaa ataactattt      2400
     caacgccggg aggaaaggtc gtggcaccgg attaccctat gacagtggta aaaaatataa      2460
     cgggattatt gccctctgtt cctctggatc cgaaacttaa aaaacttttg cgaaattatc      2520
     ctttagcaga tgaaacattt gatgcacctg gtaaaccgga cctgctatta ggaatcgacc      2580
     tgtatgctgt aatagttaca ggaggtccga taactctcgg tccgtcactt cctgccctaa      2640
     ttccgactat atttggatat gtcgttattg ggaagtcttt taaccctctc ccttccatgc      2700
     attcagagcc attgcgccct ccagaatgta cttcatccac agtgcttgtg tgttgtaaca      2760
     ttcaaagtca agtggaaaat ttttggaaaa tggaagaagc cgatccaccg ttggctcgga      2820
     aaccggaaga tgaatttgct gaaaagttct atcaggagac tacaattcag cttccgaaca      2880
     aaaagtatca agttcgccta cccttccgcc cccaagcgtc ccatcttggt gaatctcgtt      2940
     caattgcttt gaaacggttt catcagttgg aggcaagatt acaaaagaat cccagattaa      3000
     aagaaatgta tgttaaattt atgtccgatt atttagaaaa tggctatatg aagccagttc      3060
     ctactccttc tacagaggtg ccacatttct atatgagtca tcatggagtg ataaacgaaa      3120
     cctcaagtac aacaaaatta agaacggtgt ttaatgctag catgaagact tcaaacgggt      3180
     tatctttgaa tgacctattg ttacctggtc cctctttatt ggaagagata ccgactattt      3240
     tgttaaattt tcgtagacat aggactgttt tctcggggga tataaagcaa atgtacttac      3300
     aaattgagtt agccccatgt gatcatttgt atcaattaat tttgtggcga tctgagcctt      3360
     atttacctct tcaaacatat gctttgacta cagtaacttt cggagttaat tgttccccct      3420
     ttctggcgat tcgaacaata aaaaaattaa tagaagacca cggtcataaa taccctagag      3480
     ctgcaaaagc tctttacgca agtctttata tggatgactt gatacatgga gagagggatg      3540
     agagaaaagc tcgggaattg cttgaagagg taatcttatt gttagaagaa ggaggttttt      3600
     ttatgagaaa gtggacttct aattcacaat atgttttgga gggttttccc ataggtgatc      3660
     ttgagatgcc aaaagggaac cctgaggatc cacaacataa aattcttggt attcagtggt      3720
     ctccggaaaa agacgccttc acttacaaaa taattagtat gccagctcca accacaaaac      3780
     ggagcttact ctctcttatt gcttcaatat ttgatccttg tggctggctg acagcagtca      3840
     tttttaaggt aaaagtattt atgcaggaat tatggttgat aagtgtggac tgggatgatc      3900
     ccttgccaaa ggaggtaatt tttaaatggg aaaatttcgt ggaccaactc ccttgtttga      3960
     gtaaaatatc tatcccaagg cttattgaca ctgaagggag gaaggtgcaa gtatgctgtt      4020
     tctgtgatgc gagtgaggct ggcatagcaa gtttgatgta tgtaaggata ccacctctac      4080
     cttctgaaga gaatcataag gcaaagattc aattagtttt tggaaaatca aaagtagcgc      4140
     ctttaaaaaa gatatcaata cctagattag aactttgtgc agcattgttg tcggccacgt      4200
     tgataaaaaa gtatgttcct aaattgaagg agttttttgg tgttgaacaa attttttcat      4260
     ggtctgattc aacaattgcg ttgacatgga ttcagactcc aagttatcgg ttaaaaacgt      4320
     ttgtttccaa cagggtggta cagatacaag aattaaagga aaaagttatt tggaaacatg      4380
     tggaaggtaa ggataatccg gcggatttag caagtagagg tcttttacct aaggaaatat      4440
     tacagaatta tttctattgg gagggaccac aatggctgaa agagaaaata gagaaatggc      4500
     cggagtctat tacaacgtta ccatccagcc aaaaattacc ggaattaaaa gtaataagtc      4560
     ccaccttaat tgtgaaacaa atagaacagg aaattaaaga tgaggaaata aaaatacctc      4620
     atttgtcaac gtggacaaaa acaattaatg ctatggctta tgttcgtaga tttctggtcc      4680
     gaaaaatatt attagttgat aatattaaaa aattggaaaa gattaaaaca ggaaaattta      4740
     ctgcggagga gttacagtta gcggaaacaa aaactctcct tttaattcaa aaggatagtt      4800
     ttagggggga gagacttttg atagaaaaag gcgaacgttt accatcgaaa tttaacgcgg      4860
     taaagcggtt gacaccattt ttagatccaa atggcttgat gcgcgctgga ggccggctag      4920
     cgcatgcaac agtaccagaa tctgtgcgtt atcccttact tcttccgtcg cgtcacccgt      4980
     tagtaaaatt attagttgtt cattatcacc ggaaaaattt gcatgcacca tcacaattac      5040
     tccaatcgct actaaggcag aaattctgga ttttagctgc caggcgactg acgcggatgg      5100
     ttgtgaatga gtgtatcgcc tgtttcaggg taaagccgtc aagtgtctcc cctcctctca      5160
     tgggaaatct ccccgcaacc agggttcaac aaagcccccc tttctttaaa acagctcttg      5220
     atttttgtgg cccattccaa gtgaagatcc atcaaactag attcgctcga gtgtttgccg      5280
     tatatgtttg tgtatttgtt tgtatgagcg taaaggctgt tcatttggaa atggtgtcaa      5340
     atttaacaac tgatgccttt gttgctgctt tgcagcgttt cgtgtcaaga agggggttac      5400
     ctagttatat ttattgtgat aatgccagta accatacagg agctgcaaat agatttttga      5460
     aacttatatc gggaacagag ccggagctgg tccatttttc tgtgaacaat aaggttgaat      5520
     tccactttaa cgtgccaatg ggacctcatt tagggggact ttatgaagca gcagttaaga      5580
     gtttcaaata tcattttaaa agggtttgtg gtttgacagt tctcacccag gaggagtttc      5640
     agactcttac gtcacgaatt gaagcagttc tcaattcgcg gccattaact ccgctgtctt      5700
     ccgatcacag ggatttgcag gttctcaccc ctggacattt tttgatagga agacctttaa      5760
     gttctcttcc ggagaaaaag tacgatattg aaaacccccc tttcttgcag cggtggacgt      5820
     acgttgagtt ctttgcacag gctttttggg aaagatggca ttttgaatat ctccacacgt      5880
     tgcaagagag gtccaagtgg ttagaagtca ccaagagtat aaaggaagga acgttagttt      5940
     tgattcacga tgcgcaggca cccccgctca catggaaaag aggacgaatt gctaaaattt      6000
     tcccagatcc tgatgggcat gtaagggtgg ctgaagtaat tactgccacg ggaatgctca      6060
     ggaggcctgt aatcaaattg tacccgttgc caataatgtc cccttaacat tgactttcta      6120
     gaatggagaa gaacggtttc ctgtccctcc cgaccccctc aaaggatgaa ctccccctcc      6180
     cgaccccctc aaaggatgaa ctctccctcc cgaccccctc aaaggatgaa cgctccctcc      6240
     cgaccccttt aaaggatggc ttccctctac ctgccccgtc aagacatcaa tcccccgtcc      6300
     ccaacccctc cgaaaatgaa cttcccaaat ctggtcctga taagactgag gcttcaactc      6360
     ccttcggcaa aaaagaagac gatcctaatg ctaagtaccg aggtctggac agacattcaa      6420
     attttgcgtt aactgctact ctggcatttg atgatctgta ctacagaaat cacatggcca      6480
     ttataaaaaa tatagagcgg gaaaaaaggg aataaaatca aaagcccctt ctcccatcct      6540
     ccactccttc cccccaaaat ttttagtaaa agtttatcct aatctaaccc tcgttctctt      6600
     cgggtactgt ttcagtatgc agcgatcacg atcctatcga acgcgaattt tgaaacgatg      6660
     gagagcggtt atgaagtgtc ccatttgttt attcaccgct gagcccccat tcgagttgtg      6720
     cagtaacggg catcgaattt gtcaccaatg ccgggttcga ctacaaagtt gcccaatctg      6780
     cagagtttcc ctggcgaaaa acgttaagga tcgggccatg gaagagttgc ataaagcact      6840
     acggccacca ccgacggata ggaatgtatt gaatgaggac agtgaggagg aagaagaagc      6900
     ggaaagacga gaagattggc gtgttctgga gagggcaagg ccacagagga gagaagaaga      6960
     gagacatgag gcaaggcaag aacagatggg tttggaatcg ttgtcagttg aggcgctagc      7020
     agaaaggata gaggctatta agttaaccct accaagacac ctttgggctg tggcccgcct      7080
     gaacccaggc ggaggggcca tcctcgatat ttaattaggt ccctcccctg gttcggtgct      7140
     aataccctcc ctttctgggc tcttcaggat gatgcctgkt agggggtgga cgtctgtctc      7200
     ggtctgaacc cctaaagggg ttcagggcgg gctgga                                7236
//
ID   BEL-5_BTa-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-222
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 570-570 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~97% identical to each other.
XX
SQ   Sequence 222 BP; 63 A; 45 C; 43 G; 71 T; 0 other;
     tgtccaagcc ccgatcggca tcagctgatg gagcttcgga aagggaggag tttcttttgt        60
     aaaaaataat gttaacctaa aaagttagtc gaaaaaggag gaagtcttga attcattgtt       120
     ctctatagtt tttcttctga tataaaagtt cattcccacc caaaagtgag tattttgtct       180
     cctgcggttc ctgtaaagtt cctgaccccc caatattctt ca                          222
//
ID   BEL-5_CoFl-I repbase;    DNA;    INV; 5837 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5837
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2312-2312 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           510..5804
FT                 /product="BEL-5_CoFl-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase (including nonsense
FT                 mutations)."
FT                 /translation="MDEGWTALFGAQTALAEVVGRLARTIHEMEPARWSSG
FT                 MVEARLELLGGYWGDFQANHLKLIEAPPPEKASRVVQLYTDVEAHYLDARS
FT                 CLFDARDSLAPAPVPPGPFPGPGNPASGRGPRLPRISIPNFSGRREDWESF
FT                 RDLFRALIHEDCQLTNVERLFYLKSLAQGDAKTALDTVQVAEANYSTAWAL
FT                 LEARYEHSRLLVHDHVTALRNIKPPRDESARGLQSLLDTLEKHRDQLRALC
FT                 RPVAGWDDWFVSCGMTGMDPATRRAWEEELQRLESTVSGSEVDVATFATLT
FT                 NFLRRRCRAASSVEASQLARPFSGIASRSNSSTSGRNYHALATSNDTPSCP
FT                 ACHEGHYPGRCAQFQGLDVRARRKLVYQARLCFNCLRPWHAVKYCPFRSAC
FT                 QYCREQHHSSLHDGARRRRSGQPDGSTSSKQPRTDPPTSSSGEHSTDASPQ
FT                 A*LAVLPTALVHLSGPPGRRVPARALIDACSEVTVISATLARLVGARLETI
FT                 EASISGVGGESAVRSRVRAHLRLELPGPAPPVALTALCLPRLGLVSPSTPL
FT                 HPEAIRQWADCEGLADPSFGTPQRVDLLIGADYYHLLL*PGYTQRGEIVGQ
FT                 RTVFGWVLAGRAVGLAPGTSAVCAAAQSDVAPPWHNELTALLQRFWEMEDL
FT                 PQAHRRSDEDIECERAFADHRRAADGRYIVRLPLKGSGSLLLGDSLQSAKA
FT                 SLAALQRRLRRSPDMAVEYSRFMADYLAMGHMRPLTSAELAATAGPVNYIH
FT                 HHGIWQHADRGRKLRVVFNASNPTSSGHSLNDVLHAGPRLQAALPSVLMRW
FT                 RRHRIAFCSDIRMMFRQIWIDYRDVDLQRIVWAADPSQPPTHYQLLTVTYG
FT                 ESCSPYLSLRTLQQLCQDEGHNWPEAVSAALCDRYADDFLSGADDVTAARR
FT                 LRDQLSGLMKAGGFPLRKWVANVRELLDDLPDDVRLRPTWEQLSAEGLVSE
FT                 LGVKWDPPSDCFQLTPPPLQPQSTKRTMLAALAGLFDPCGWLAPIVLNAKL
FT                 LLQDLWRARLGWDEPAPISMTRRWAEFTAELQAISTFTLPRWIGVGPSSEL
FT                 HLHGFSDASRRAMAAVIYSRLAPGAGPALCHILLARTKLSPIRSLKPAPET
FT                 SARMTIPRLELRAALIAAKLLRTAADELRVPVDRCHAWCDSQIVLHWLRSD
FT                 RPTNNVLIDNYVAQIQEMLPSSVWRYVPTQSNPADLATRGADMTGLRSQRT
FT                 WWEGPTWLAEDVDSWPLDPLPAPNQHSSICCVVQQLDASYLEQFSNLRMLL
FT                 SFLVRIRRFVRSRLGRGPVLSVASPLTPTELHDAFLACVRLSQERSFSDDL
FT                 QCLRRGERLRKTNPLVPLAAFLDDDGILRVGGRLEHSPLTYEERHPPILSG
FT                 ASSLASMVIAWAHSRALHGGYRVTSAYVCKRAWLLGGPRRIKAHLRRCVVC
FT                 IRLRARPATQLMAPLPSSRVSPSRAFACTGVDYAGPFHVLSARGRGVRTTK
FT                 GYIAVFVCLATKALHLELVGDLSAASFLGALHRFAGRRGRPGEIWSDNATC
FT                 FRRADVELRDALLTAELDWGLVAGSLADQGIAWKFIPPGAPHFGGLWEAAV
FT                 KSTKSHLQRVMGSRHLTYEEFSTVLVGIEMVLNSRPLTPLSGDTGDLDILT
FT                 PGHFLVGGPLNSIVLPGPPAESLDALAHWELVRGVRAQFWSRWSREYLNTL
FT                 QQRSKWTTPRRNFIVGDVVVLLDATLLQSSGRWPIGRVISVHPGADGFVRA
FT                 ATLKTATGVYKRSITKMVLLPVSAPPAAPPPPEDSLTDPGLAGGT"
XX
SQ   Sequence 5837 BP; 1002 A; 2010 C; 1687 G; 1138 T; 0 other;
     ttggtccttt gagagccgga ttccgcggag ataaccagcg accagcagcc cagaggacag        60
     ccggtggttc cacattattt gaagcaatgt aagtataagt gacaaacaaa gcgcgaacat       120
     ggccgccgcg gtcgccatag tgcccgcggc ccggcaccag tcgttcggcc acggcaatgt       180
     tgaagccgtg tcgccctgca cgcgtgaaat gttgtgaggg actgccgcgg ctgacagagc       240
     tcgcggtcca gtcatttggc ccagccacgg cggcaagcag gctgtgtcgc tgacggccaa       300
     agttaacgag tggtatagac gtggcccggc ttcatcaagc cgccattgtt gcaatgatcc       360
     gccgacggcc tccttgtcgg ccgtggcggc catcttgtcc gctcaagcgc gtcgcctgcc       420
     gattcgactc gaattgtcga cccccctaac accgccagct gtggctcggt ggcatattcc       480
     gctcaagcgt cgaatactaa tgtttcagaa tggacgaagg ctggaccgcg ctgttcggtg       540
     ctcagacggc tctcgccgag gttgttggcc gcctggcccg caccattcat gagatggagc       600
     cagcccgctg gagctcgggc atggtagaag cgaggttgga gttgctcggc ggatattggg       660
     gcgattttca agccaaccat ctcaagctca tcgaagctcc gccaccggaa aaggcgtctc       720
     gggtggtcca gctgtacact gacgtggaag cgcactacct cgacgcacgg tcttgcctct       780
     tcgacgcgag agactccctg gcgccggcac ctgtccctcc cgggccattc ccgggcccag       840
     ggaacccggc ttcgggccgt gggcctcgct tgccgagaat cagcattccg aacttctccg       900
     ggagacgaga agactgggag agcttccgtg atctcttccg agcgctgatc cacgaggact       960
     gccaactcac caacgtcgag cgcctgttct atttgaagtc gctcgctcag ggagacgcta      1020
     agacggccct cgatacggtc caggtagccg aggccaatta ctctacggca tgggctctgc      1080
     ttgaagcgcg ctacgagcac agccgccttc tcgtccacga ccatgtcaca gccctgcgga      1140
     acatcaagcc acccagagac gagtccgccc gcgggttgca gagcctcttg gacaccctgg      1200
     aaaaacatcg cgaccagctt cgcgccttat gtcgtcccgt agccggctgg gacgattggt      1260
     ttgtctcgtg tggaatgact ggcatggatc cagcgacgag gcgtgcatgg gaggaggagc      1320
     tccaacggtt ggagagtacc gtttctggct ccgaggttga cgtcgccaca ttcgccacct      1380
     tgaccaactt tcttcggcgc cgttgccgcg ccgccagctc tgtcgaagcc tcgcagctcg      1440
     cacgtccctt cagcgggata gcctcacgct caaactcctc gacatcagga cgcaattacc      1500
     acgccctcgc cacgagcaac gatacgccat cgtgcccggc gtgccacgag ggccattatc      1560
     ccgggcgttg tgcacagttc caggggcttg atgtacgcgc acggaggaag ctcgtctacc      1620
     aggcacggct gtgcttcaat tgcctccgac cctggcacgc tgtgaagtac tgccccttcc      1680
     gatcggcttg ccaatattgc cgagagcagc atcacagctc actgcacgac ggtgcccgtc      1740
     gccgccgctc ggggcagccc gacggctcta catcatcaaa gcagccccgc acggacccgc      1800
     ccacctcttc atcgggagag cactcgactg acgcgtcacc tcaagcgtga ctagccgtgc      1860
     ttccgaccgc cctcgtccat ctgagtggtc ctcctggtcg tcgagttccg gcccgagcgc      1920
     tgatcgatgc gtgctccgag gtcaccgtca tctctgcgac tctcgcgcgc ctggtcggcg      1980
     cacgactaga aaccatcgaa gccagcatct ccggcgtcgg tggcgagtcc gccgtccggt      2040
     ccagagtccg ggcccatctc cgcctcgagc ttccagggcc cgcaccaccg gtcgcgctga      2100
     cagcgctgtg tttgcccagg ctcggcctgg tatccccctc caccccgctg cacccggagg      2160
     caatccggca gtgggctgac tgcgagggcc tcgccgatcc ttcgtttggc acgccacaac      2220
     gcgttgacct cctcatcggc gccgactact accacttgct gctatgaccc ggctacactc      2280
     aacgaggaga aatcgtcggg cagcgcacag tcttcggctg ggtattggca ggccgtgccg      2340
     tcgggctcgc tccaggtacg tcagccgtct gtgcagccgc ccaatccgac gtggctccgc      2400
     cttggcacaa cgagctaacc gctctgctac agcggttctg ggagatggag gatcttcctc      2460
     aggctcaccg ccgctcagat gaggacatcg agtgcgagcg tgctttcgca gaccaccgac      2520
     gcgccgcgga cggacggtac atcgtgcgcc tcccgctgaa gggcagcggt tcgcttcttc      2580
     ttggcgacag tcttcagagc gccaaggcct ccttggcagc cctgcaacgc cggcttcggc      2640
     gaagccccga tatggctgtg gagtatagtc gattcatggc tgactatctc gcgatgggcc      2700
     acatgcgccc gctcaccagc gctgagcttg cagctacagc tgggcccgtc aactacatcc      2760
     atcatcatgg catctggcag catgctgatc gcgggcgcaa gctccgagta gtcttcaacg      2820
     cgtccaaccc gacttccagt ggccacagct tgaatgacgt cctccacgct ggacccagac      2880
     tccaagccgc gctcccatcg gtgctcatgc gctggcggcg gcaccgcatc gccttctgca      2940
     gcgacatccg catgatgttc cggcagattt ggatcgacta ccgtgacgtc gacctgcagc      3000
     ggatcgtctg ggctgccgat cccagccagc ctccaaccca ctaccagctg ctcactgtga      3060
     cttacggcga atcgtgctcg ccttacctgt cgctgcgtac cctccaacag ctatgccagg      3120
     acgaaggcca caactggccc gaagctgtgt cagccgccct gtgtgaccgc tacgccgacg      3180
     actttctctc cggggccgac gacgtcaccg cggctcggcg cctccgcgac cagctgagcg      3240
     ggctcatgaa ggccggcggc tttcccctgc ggaagtgggt ggccaatgtc cgcgagctgc      3300
     tcgacgatct gcctgacgac gtccgcttac gtccgacctg ggagcagctc agcgctgaag      3360
     gcctcgtcag cgagctcggg gtcaagtggg atccaccgtc ggactgcttt cagttgacgc      3420
     ctccaccact ccagccgcag agcacaaagc ggacgatgct cgcggcgctc gcgggtctgt      3480
     tcgacccatg cggctggctc gcgccgatcg tgttgaatgc caagctcttg ctccaggatc      3540
     tctggcgcgc cagactgggc tgggacgagc ctgcgccgat ctcaatgact cgccgatggg      3600
     cggaatttac cgccgagctc caggccatct ccaccttcac cttaccgcgc tggatcggag      3660
     ttgggccttc ttccgagctt cacctgcacg gcttttcgga cgccagtcgc cgcgcgatgg      3720
     cagccgtcat ctactctcgc ctcgcgcccg gggctgggcc ggcgctctgc cacattcttc      3780
     tggctcggac gaagctctcg ccgattcgct cgctcaagcc ggcgccagag acatccgcgc      3840
     gcatgacgat tccgcgcctc gagctccgcg ccgcactgat tgccgccaag ctcctgcgga      3900
     ccgctgccga cgagctacgc gtacctgtcg accgctgtca cgcatggtgc gactcacaga      3960
     tcgttctgca ctggctgcgt tccgacaggc caaccaacaa cgtgctgatc gacaactatg      4020
     tcgcccaaat ccaggaaatg ctgccttcga gtgtctggcg atacgtgccg acccagtcaa      4080
     atccagccga cctcgcgacc agaggtgccg acatgaccgg ccttcgctcg cagcgcactt      4140
     ggtgggaggg ccccacttgg ctcgccgagg acgtcgactc gtggccccta gacccgctcc      4200
     ccgcaccgaa ccagcattca tccatctgct gcgtagtgca gcagctcgac gccagctacc      4260
     tcgagcaatt ctccaactta cgcatgctac taagcttcct cgtacgcatt cgtcgattcg      4320
     tccggagccg cttgggcagg ggccccgtgc tttcggtcgc ttcacctctt acgccgaccg      4380
     aactccacga cgcttttctc gcatgtgtac gcctcagcca ggagagatca ttttcggacg      4440
     acctccagtg tcttcgacgg ggcgaacgtc tgcggaagac gaaccccttg gtaccgttag      4500
     cagccttcct cgatgacgac gggattctgc gcgtcggcgg gcggctagag cattcaccgc      4560
     tgacctacga ggagcggcac ccgccaattc tcagcggcgc ctcttccctc gcttccatgg      4620
     tcatcgcctg ggcgcactct cgggcgctgc acggtggata ccgtgtcacc agtgcctacg      4680
     tctgtaagcg cgcttggctc ctcggtgggc cccggcggat caaggctcac ctccgcaggt      4740
     gcgtcgtctg catccggctg cgagcgcgac cggcgactca actcatggcc ccactgccgt      4800
     cgtctcgagt ctccccttct cgtgcctttg cctgcaccgg agtagactac gccggccctt      4860
     tccatgtact ctccgccaga ggacgaggag tccggaccac gaaaggctac atcgccgttt      4920
     ttgtgtgcct cgccaccaag gccctgcacc tggagctggt cggcgatctc tcggctgcgt      4980
     ccttcttggg cgccctccac cgattcgctg gacgccgcgg tcggcccggt gagatatgga      5040
     gcgacaacgc gacttgcttc cgccgcgctg atgttgagct gcgcgatgcc ttgctgacag      5100
     ccgagctgga ctggggattg gtcgcgggct ctctcgccga tcaaggaatt gcttggaagt      5160
     tcattccacc gggtgctcct cacttcggtg gcttgtggga ggccgccgtc aagtcaacca      5220
     aaagtcacct ccagcgcgtc atggggtcac gccatctcac ctacgaggaa ttttccacgg      5280
     tgctcgttgg catcgagatg gtcttaaata gccgaccact gacaccgcta tctggagaca      5340
     ctggagacct cgatattctc accccagggc acttccttgt cggtggccct ctcaactcca      5400
     tcgttctgcc cggcccccct gcggagagct tggatgcgct cgcccactgg gagctcgttc      5460
     ggggggtccg cgcccagttt tggtcccgct ggagccgaga atacctcaac acactccaac      5520
     agcggtcaaa atggactact cctcgccgga acttcatcgt cggcgatgtg gtcgtcctcc      5580
     tcgacgctac acttctgcag tccagcggcc gatggccgat cggccgtgtc atcagcgtcc      5640
     acccgggagc cgacggcttt gtccgcgctg ctaccctcaa gacggcgact ggcgtgtaca      5700
     agcgatccat caccaagatg gtcttgctgc ctgtgtcagc gcctcccgcg gctccgccgc      5760
     ctccagaaga ctccctgacc gaccccggtt tggcgggcgg cacgtagttc ttcgatccag      5820
     gatcgaggcg ggcggat                                                     5837
//
ID   BEL-5_CoFl-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-218
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2282-2282 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 218 BP; 41 A; 76 C; 54 G; 47 T; 0 other;
     tgtttggttt cgcgcccgag cgcgacagcc gagcgaggcg ctgcgtgcac ttccgccatg        60
     ctcacgggct tccgccttgc cgggagccgc ctctgcgttc gggcacttga gcactgctct       120
     ccgagacgac cagacgcttg tcccgctcac actcacgacg cctctcacgc tgtaatcaac       180
     ccgcttgtac aatatcaaat aaagtgtttt accaaaca                               218
//
ID   BEL-5_CQ-I  repbase;    DNA;    INV; 5709 BP.
XX
AC   AAWU01007782;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_CQ_;
KW   BEL-5_CQ-LTR; BEL-5_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5709
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 163-163 (2011).
XX
DR   GenBank; AAWU01007782; Positions   10465   16173.
XX
CC   Positions [4719-5300] - Integrase core
CC   'CTGAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..2194
FT                 /product="BEL-5_CQ-I_2p"
FT                 /translation="MPPKILRTPAKKEEVDDGEDLETLVYLRDEKLLKLVR
FT                 LKEKLAGLGLHERTATQINVNRRVLDASNAEFNSLHERIVRLDAKKRKEHG
FT                 DKLVEFETLFIEIDTMLEGWKQTLEILAGPSTAPVPAAQRPVVIQQSLPRL
FT                 VPTFDGKYENWKRFKTMFRDVVDRSNETPRMKLYRLEEALIGEAKGTLDEK
FT                 TIEDGNYDGAWELLEERYEDNRRMVDIHIGGLLKVQKLHKESHAELRALVE
FT                 TVVGHVENLKYLRQEFTGVSTQFVVYLLAHALDSDTKKLWEATVKKGELPN
FT                 YEETIKFLKNRVSVLERCDETSEPAAKQRDRNNPRPTNKPSYQKANAATTS
FT                 SNPEIRCEMCGDSHLTFKCGTLAGLTVAQRSEKVRSKNLCLNCLRKGHSWK
FT                 KCTSRYSCGKCRQRHHTLLHDDSEQKFVQKPVNPQNVAPVANQPPVSQATG
FT                 QEPPQSTSATCNHTQTVKTVMLLTALVHLLDDKDRPVPCRLLLDNGSQVNF
FT                 ITEQLAKRLNTRRVAANVPICGIGAVKTYARESMTVQLRSRYNSFTVEVEC
FT                 LIVPKVTGMIPSARSARPTGRFLRTSSWPTRTSTHRTGSTCCSASRCSSSC
FT                 "
FT   CDS           1849..4410
FT                 /product="BEL-5_CQ-I_1p"
FT                 /translation="MPTAARQRIAGQFYYGTIGKTVEHTSSSCKRSHLRNR
FT                 CSEDIRPRVDDGPAPIPVQQLHGGSGVSHRPQGNRDDSVGPISTSDWPIPA
FT                 NIQLADPNFHTPDRIDMLLGVSMFFKLLKSGQLELAKNLPELRETYLGWVV
FT                 AGDVGDTVPDAQFSHTATLDDVSEAIERFWRVEDIDSATQVSTEQDECECE
FT                 AFFRATHKRDPTGRYEVRLPFRPVVGNLDNNRSLALRRFLSLEKRLNRDPD
FT                 LKRQYGEFISEYESLGHCKSVEEADDSPGQGRYYMPHHAILRPSSSTTKLR
FT                 VVFDASAKLSPSSVSLNEALQIGGTVQNDLFSILLAFRKHPVAFTADLSKM
FT                 YRQIRVAPADTPFQRIFWRNEPADFIRVLELTTVTYGTASAPFLATRCLVQ
FT                 LCEDEGEKFPLAAKIVRDACYVDDILSGADSPDEAIECLKQLQGLLSRGGF
FT                 PIHKWSSNESAVMDQIPEGEREKLIDLDGLTGGVVKALGLYRSPGDDEFRF
FT                 TANQADADADATKRRVLSEIGKFFDVLGLLSPVIIKAKILMQRVWLAGLSW
FT                 DVLLEGGLASTWEQFQIALPFVRDIRIPRYVIGPGNIALELHGYSDASEVA
FT                 YGAVIYVRSLFPSGKSPQMRLLCSKSKVAPTKQLDIHRLELLGCRLLSKLV
FT                 VKVLAALKLPFRNVVLWSHSQVVLAWLKKPLDQLQSFVRNRVAEIRNETSN
FT                 FIWLYVRTKDNPADLVSRGMFPAELMVCEKWWKGPAYMQSEEYRVEPVEDL
FT                 PDCEIPELRKVKMVTMLTCNSVEFPIFETCSSYRKLQRVMAYVLRFTANCR
FT                 KKNPAERVRQRYLTIPELRAAQDVIVLVIQHDALSKEIQQVAENDTAGRFK
FT                 V"
FT   CDS           4692..5708
FT                 /product="BEL-5_CQ-I_4p"
FT                 /translation="MGRLPSCRVTQALPFEEVGVDYAGPIFVKVGTRKPQL
FT                 VKAYFAVFVCMSTKAVHLELVSDLTTEAFLAALQRFVSRRGVPRTIHSDNG
FT                 TNFKGAKAELHELFLLFNQRAFNDQIATYCQPKEITWSFIPPGAPNFGGLW
FT                 EAAVKSTKYHLKRILKNAQLTFEQYATVLAEVEAVLNSRPLFATSADPADP
FT                 QVLTPGHFLIARPLTAIPEPVYEGTPTNRLSKWQHLQLLREQFWRTWKRDY
FT                 LTSLQPRGKDNKEKPNVRPGMVVLLEEKDAPPLQWKMGIIQQTYPGPDGFV
FT                 RTADVKVGGTVVRRPITKLSVLPIEDNEQTADHGAIPAGTSPQPGGR"
XX
SQ   Sequence 5709 BP; 1349 A; 1660 C; 1659 G; 1041 T; 0 other;
     cttcagtccg ctttttcctg ggccacgacc gggcccgaac attggtcctt cgagccggat        60
     ggacttccgg cggtggatgt aaaaaagaag gctcccgccg cgcgtgtgag aggcaaaccg       120
     gcctcaaagc cgtggacagt gaccgcgagt gagaagggtg aggcaaaccg gccaaaaacc       180
     ccgcaaaaca gtgcgctgga ggaagagaca aaccggtctc ggaatctggg cacaaccacg       240
     tggaagaccc gtgaggacga ctggcctaga actttccgtg gaagaagaag gcaaaccggc       300
     ctgaaaaaac attccggaag aaaaagtgct tgaaggtgca aaaaatccgc atccggaaga       360
     gacaaagtga aagtgaggtt aaataaccta aaagtgtacg atgccgccaa aaatactgcg       420
     cacccctgcg aaaaaggaag aggtggacga tggcgaagat ctggagaccc tggtctacct       480
     gcgggacgag aaactcctga aactcgtacg cctaaaggag aagctggctg ggctcgggtt       540
     gcacgaacgg accgcgaccc agatcaacgt gaaccggaga gtgctcgatg cctccaacgc       600
     cgagttcaat tctctccacg agcgcatcgt ccgcctggac gccaagaagc ggaaggagca       660
     cggcgataag ctggtggaat tcgaaacgtt gttcatcgag attgacacaa tgctagaagg       720
     atggaagcaa accctggaaa tcctggctgg tccatcaacc gcccctgtac ctgctgccca       780
     acgacctgtt gtcatccagc agtcccttcc gcggctcgta cccacgttcg acggaaagta       840
     cgagaactgg aagcggttca agacgatgtt ccgtgacgtc gtagaccggt cgaacgaaac       900
     tcccaggatg aagctgtatc gcctggagga agccctcatt ggtgaggcaa aagggacgct       960
     ggacgagaag acaatcgagg acggcaacta cgacggcgcg tgggagttgc tggaggagcg      1020
     atatgaagac aaccggagaa tggtggacat ccatatcggt ggactgctga aggtccagaa      1080
     gctacacaag gagagccacg cggaactacg agcgctggtg gagaccgtgg tcggccacgt      1140
     agaaaacctc aaatacctga ggcaggagtt cactggtgtg tcgacacagt tcgttgtgta      1200
     cctgctggcc catgccctgg acagcgatac taaaaaactg tgggaggcca cggtgaagaa      1260
     gggcgagctg ccgaactacg aagaaaccat caagttcctg aagaaccgcg tctccgtcct      1320
     ggagagatgc gacgagacca gtgaacctgc agcgaagcag cgagaccgaa acaacccgag      1380
     gccaaccaac aaaccgtcct accagaaggc caacgctgcg accacgtcgt cgaacccgga      1440
     gatccgctgc gagatgtgtg gggactccca cctcaccttc aagtgcggca ccctcgctgg      1500
     cctcacggtg gcccaacgca gcgaaaaggt aagaagcaag aacctgtgtc tcaactgcct      1560
     ccgcaagggc cacagctgga agaagtgtac gtccaggtat tcctgtggaa agtgccgcca      1620
     acgtcaccac acactgctgc acgacgactc ggaacaaaaa ttcgtgcaga aacccgtcaa      1680
     cccgcagaac gttgcaccag tagccaacca gccgccagtg tcccaagcca ctggccaaga      1740
     accaccacag tctacttcgg caacctgcaa ccacacccag acggtgaaga ccgtcatgct      1800
     tctgacagcg ctcgtccacc tgctggacga caaggaccga cctgtgccat gccgactgct      1860
     gctcgacaac ggatcgcagg tcaattttat tacggaacaa ttggcaaaac ggttgaacac      1920
     acgtcgagta gctgcaaacg ttcccatctg cggaatcggt gcagtgaaga catacgcccg      1980
     agagtcgatg acggtccagc tccgatcccg gtacaacagc ttcacggtgg aagtggagtg      2040
     tctcatcgtc cccaaggtaa ccgggatgat tccgtcggcc cgatcagcac gtccgactgg      2100
     ccgattcctg cgaacatcca gctggccgac ccgaacttcc acacaccgga ccggatcgac      2160
     atgctgctcg gcgtctcgat gttcttcaag ctgttgaaat cgggacaact agagttggcg      2220
     aagaaccttc cagagctccg cgagacctac ctgggctggg tcgtcgcggg tgatgtcggc      2280
     gacaccgttc ctgacgcgca gttcagtcac actgcaacgc tcgatgacgt gagcgaagcc      2340
     atcgagagat tctggcgggt cgaggacatc gacagcgcca cacaagtcag cacagaacag      2400
     gacgagtgcg agtgcgaggc attcttccgt gcgacacaca agcgggaccc taccggccgg      2460
     tacgaggttc gcttgccatt ccgccccgtc gtcggcaacc tcgacaacaa ccgcagcctg      2520
     gctcttcggc gattcttgtc gttggagaag cggctcaacc gggacccgga cctgaaacgg      2580
     caatacggtg agtttatttc cgagtacgaa tccctggggc attgcaagtc ggttgaagag      2640
     gccgacgact cacctggcca aggtcgttac tacatgccgc accatgccat ccttcgccct      2700
     tcgagttcca caaccaagct gcgggtagtt ttcgacgctt cggcaaaact ctccccttcg      2760
     agtgtctccc tcaacgaagc cttgcagatc gggggaaccg tccaaaacga ccttttctcg      2820
     attctgctcg cattccgcaa gcacccggtc gccttcaccg cagatttgtc gaagatgtac      2880
     cgccagatcc gggtggcccc tgcggacact cccttccaac gaatcttctg gcggaacgaa      2940
     ccggccgact ttatccgcgt gctcgagctc acaaccgtga cgtacgggac ggcatctgca      3000
     cctttcctcg cgacccgctg cttggttcaa ctctgcgaag atgaaggaga gaaatttccg      3060
     ctggctgcca aaatcgttcg cgacgcttgc tatgtcgatg acattctttc tggggcagac      3120
     tcacctgacg aagcgatcga gtgtttgaag caactccaag gcctgctcag ccgtggtggg      3180
     tttccgatcc acaaatggag ttcgaacgag tcggcggtca tggatcagat tccggagggt      3240
     gagcgggaga aactcatcga tctggacgga ctgaccggtg gcgtggtcaa ggctctgggg      3300
     ctctacagga gtccagggga tgacgagttc cggttcactg ccaaccaagc cgacgctgac      3360
     gccgatgcca ccaagcggcg tgtgctgtcg gagatcggca agttcttcga cgtgctgggc      3420
     ttgctttcac cggtcatcat caaggccaag atcctgatgc agcgagtttg gctcgctggc      3480
     ctgtcgtggg atgtgctgct ggaaggaggg ttggcaagta cttgggaaca atttcaaatc      3540
     gcacttccct tcgtgcgaga catccggatt ccccgttacg taatcggccc tggaaacatt      3600
     gcccttgaac tccacggata cagcgacgcc tccgaggtcg catacggcgc agtgatttac      3660
     gtgcgcagcc tgttcccgag cggaaagtcc ccccagatgc ggctactctg cagcaagtcc      3720
     aaggtagcac caacgaagca gctcgacatc caccgactcg agctcctcgg gtgcagattg      3780
     ctgtccaagc tggtggtcaa ggtcctcgca gcgttgaaac tgccgttccg gaacgtcgtt      3840
     ctgtggagcc acagccaagt ggttttggcg tggctcaaga aacccttaga ccagcttcaa      3900
     tcgttcgtcc gcaaccgtgt cgccgagata cgaaacgaaa ccagcaactt catctggctt      3960
     tacgtgcgaa ccaaggacaa ccctgccgac ttggtgtcac gtggtatgtt tcccgccgaa      4020
     ctgatggtgt gcgagaagtg gtggaaagga ccggcgtaca tgcagtccga ggagtaccgg      4080
     gtggaacctg tggaagattt gccggactgt gagatccccg agttgcggaa ggtgaagatg      4140
     gtgacgatgc ttacctgcaa ttccgtcgag tttccgatct tcgaaacgtg cagctcatac      4200
     cgtaagctgc aaagggtgat ggcgtacgtg ctgcgcttca cggccaactg cagaaagaag      4260
     aatccggcgg aacgagttcg ccagcgctac ctgaccatcc cggagttgcg ggcggcgcag      4320
     gacgtgattg tgttggtgat ccagcacgat gcactgtcca aggaaatcca gcaagttgcc      4380
     gagaacgata ccgctggacg attcaaggtt tgaccccgtt cctggacaag ggcctactac      4440
     gagtgggtgg cagattgcag cagtcggagt tgccgttcga gacccaacac caacttctcc      4500
     tcccgaagca tcgcgttacc aacctgatcg ttcgagcgta tcacgaagag cacctgcacg      4560
     cggggccatc ggccttgctt gcgacgctga ggaggcggtt ctggctgatc gacggacggt      4620
     cgacagtccg gagcgttaca aggagctgcg tgacgtgctt ccacgcgaag cctcgcggct      4680
     cgagccaact gatgggacgg ttgccgtcct gccgtgtgac gcaagccctc ccgtttgaag      4740
     aggtcggcgt agattacgcc gggcccattt tcgtcaaggt aggaacccga aagccgcaac      4800
     tcgtgaaggc ctacttcgcg gtgttcgtgt gcatgtcgac caaggccgtc cacctggagc      4860
     tagtctcgga cctcacgacc gaggcattct tggccgccct ccagcgcttc gtgagccgac      4920
     gcggcgtgcc tcgcacgatc cattccgaca acgggacgaa tttcaagggg gccaaggcgg      4980
     agttgcacga gctgttcctg ctgttcaacc agcgtgcgtt caacgaccag atagcgacct      5040
     actgccaacc gaaggagatc acctggtcgt ttatccctcc gggggcgccg aatttcggtg      5100
     gcctctggga ggcggctgta aaaagcacga aataccatct caagcgcatc ctcaagaacg      5160
     cacaactcac cttcgagcag tacgccactg ttctcgcgga ggtcgaggcg gtgctaaatt      5220
     cgcggccctt gttcgctacg tcggcggacc ccgcggatcc gcaagttctg acgccgggac      5280
     acttcctgat tgcgcgaccc cttacggcca tcccggaacc agtctacgag gggacaccca      5340
     ccaaccggct gtcgaagtgg cagcacctgc aactcctgcg cgaacagttt tggcgaacct      5400
     ggaagcgcga ctacctgacg agcctccagc cgagaggcaa ggacaacaag gagaagccga      5460
     acgtgcgtcc gggaatggtg gttttgctgg aagaaaagga cgcgccgcca ctacagtgga      5520
     agatgggaat tatccagcaa acttacccgg gaccagatgg attcgtacgc acagcggacg      5580
     tgaaggttgg tggaacagtc gtccggcgtc cgatcaccaa gctatccgtc ctcccgattg      5640
     aggacaacga gcagactgca gaccacggag cgattcctgc tgggacttct ccccagcccg      5700
     gggggagga                                                              5709
//
ID   BEL-5_CQ-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   AAWU01007782;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_CQ_;
KW   BEL-5_CQ-I; BEL-5_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-322
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 164-164 (2011).
XX
DR   GenBank; AAWU01007782; Positions   10143   10464.
XX
SQ   Sequence 322 BP; 75 A; 82 C; 81 G; 84 T; 0 other;
     tgttggctgc ttgacggatc gagctgattt ggcagcactg gtcgagcgcc gcagccagat        60
     tgctacgatc ggttttccca ccttgcacaa cctcggcgcg caacggcggc cgttgtgcgc       120
     gacgacgaag aaggagaaga ggagagaacg acgctcggcg ccatcttttt tcatcactcg       180
     cttacaagtg ctcgcggaaa caacacgttc tttacgcttt agtttaatta gttttaataa       240
     agtagtgtta aagtaaagtt tccgtttcga gtgcttcttt tctacatcca cggcctcaag       300
     aactgtctgc cgcaaaagtc ca                                                322
//
ID   BEL-5_DAn-I repbase;    DNA;    INV; 4496 BP.
XX
AC   AAPP01017073;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DAn_;
KW   BEL-5_DAn-LTR; BEL-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4496
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017073; Positions   12797   17292.
XX
CC   Positions [3546-4124] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..1141
FT                 /product="BEL-5_DAn-I_1p"
FT                 /translation="MDAETRRKWIEDSRDLNSPTTKDLFKFLDTRCEEFEL
FT                 SQRQSIGDGKIKQVEKARKPMHIMMAVEENGVKGNMNGPDLIGSADFLALS
FT                 CEQRRATAKEKSVCFNCLKPGHFTRQCESKFNCRICHARHHTLLHVQPAAN
FT                 AQGFAATTISSQDTAQTVSTGREDKHNQDAPHTTSVTVSHIARAYGSQSAA
FT                 DAQGSVAIPNNYGRRQSTLPTALVYVQNANGIYTSCRLLFDSGSELSYISE
FT                 RCINALGLARSSSRILVSGISAIKAEATRGVTQLHLKSRVSDNTLKITAHV
FT                 LSKITSSLQRHNVDPSSLNVFNGFLMADTNFASVAPIDILLGSRPKDARQH
FT                 GQSYCHFFNIWMGHHIGWS"
FT   CDS           1071..2714
FT                 /product="BEL-5_DAn-I_2p"
FT                 /translation="MHDNMGNLIAISSIFGWVITSVGVNQSPTTTTLFSKC
FT                 NIDTTLQRFWEIEEVSYAHKDPDEDKVEKHFLETHKRNDAGRYIVELPFKI
FT                 ANPKFADTLQGAQSRFMAVERRLQRNQDLREKYIKFMQEYISLGHMHEIRT
FT                 PSFDSGNFFYLPHHPIVGRKLRIVFDGSFKDANGVALNDVLHIGPSIQRNL
FT                 FSVCLRFRMYRYVFSADIVKMFRQIWVSPDHQNYQRIVWREHLSAPLKNYQ
FT                 LDTVTYGTACAPYLAVRVLEQLAYDHKEQYPTASKILLEDFYVDDVLTGSN
FT                 NENELIAIRNELLELMSHAKLELDKWVSNSSRICRRESSTEREEEAVKVLG
FT                 IYWNSIDDQLMYKTCLTSNPNCTKRQILSDVARIFDPLGLLSPIVVQFKIM
FT                 FQQLWLLDLGWDTKLPPNIAEPWLKCRADLDTLKRLRVPRFVPNREDSIEL
FT                 HAFSDASTKAYAAAVYCRFRHEDGTYSVSLVAAKTRVAPLKQQSLPRLELC
FT                 GALLLSRLVRSLKDGLRHKDIQVYAWCDSTIVLAWLSYPPSKMKTFVANRT
FT                 S"
FT   CDS           3519..4496
FT                 /product="BEL-5_DAn-I_3p"
FT                 /translation="MSDLPSIRITQSLPFVNSGCDYGGPITLKDQKGRNAK
FT                 KSKGYICLVVCLVTSALHLELATDLSTETFLAALRRFMSLRGKCAQIYSDN
FT                 GRNFVGARRALDEMQQLLASSQHKDRVSQTLADEGIKWVFIPPYAPHWGGK
FT                 WESSVRSVKLHLRRVIGNTILTFEQMHTLLAQISAVINSRPLYYTPDTDVT
FT                 YLSPAHLLIGRSFTTIPEGDMSHIQENRLDYWQGVQVLYQGFWKRWHQEYL
FT                 TTLQHRPKWGTPQPNVEFGSVVLIKDWNTPPAAWPLARVISTHTGTDGRVR
FT                 AVKLKTASGEATRPITKIAVLPNSETMFQGGPGC"
XX
SQ   Sequence 4496 BP; 1366 A; 1065 C; 1011 G; 1054 T; 0 other;
     ttggattggg gaaaacacac gtgattgctg gatcattttt ctaattttgc aaaaaatgga        60
     tgcagaaaca cgtcgcaaat ggatcgagga cagccgcgat ttaaactcac caacaaccaa       120
     ggatttgttc aagttcctgg atacacgctg tgaggagttt gaactcagtc aacgacaaag       180
     catcggggat ggcaagatca agcaagttga aaaggcgaga aaacctatgc atattatgat       240
     ggctgtcgaa gagaatggcg tcaagggcaa catgaacgga cccgatctga ttggatctgc       300
     ggattttctg gcgctaagtt gtgaacaacg aagagcaacg gcaaaagaga aatcggtatg       360
     tttcaactgt ttgaagcctg gacactttac caggcagtgt gaatccaaat tcaactgtag       420
     gatttgccat gctcggcatc atactttatt gcatgtacaa ccggctgcaa acgcgcaagg       480
     ctttgcagca accacgatca gttcgcagga tacggcacag accgtgtcaa caggaaggga       540
     ggacaagcat aatcaggatg ctcctcacac tacatcggtg acagtgagtc acatcgcccg       600
     agcatacggc tcacaatcgg ctgcagacgc acaaggctct gtagcaattc caaacaatta       660
     tgggcgtcgc caaagcacgc tgccgactgc attggtatat gtccaaaacg caaatgggat       720
     atatacaagc tgccggctac tattcgacag tggatctgaa ttgtcataca tttcggaacg       780
     ttgcatcaac gcacttgggc tagcacgttc atcatcacga atcctagtgt caggaatttc       840
     tgccatcaag gctgaggcaa ccagaggggt cactcagctg catctcaaat ctagagtttc       900
     ggacaacact ctaaagatta ccgcacacgt tctaagtaag atcacatctt cgctgcagag       960
     acacaatgtt gatccatcat cactcaatgt gttcaatgga ttcctgatgg cggataccaa      1020
     cttcgcatca gtggccccga tagacatttt attggggagc cggccaaaag atgcacgaca      1080
     acatgggcaa tcttattgcc atttcttcaa tatttggatg ggtcatcaca tcggttggag      1140
     ttaatcagtc tccaacaact acaactctat tctccaaatg caacattgac actacactac      1200
     aacgattttg ggagatagaa gaagtcagct acgcacacaa ggatcccgac gaagacaagg      1260
     tggagaaaca tttcctcgaa actcacaaaa ggaatgacgc tggaaggtat atagtcgagc      1320
     tacctttcaa aatagcaaac ccgaaatttg cagacacgct ccagggagcg caatcccgct      1380
     tcatggctgt agaaagacga ctacagcgca atcaggattt acgagaaaag tacatcaagt      1440
     ttatgcagga atacatcagt cttggccata tgcacgaaat cagaacacca agcttcgatt      1500
     caggcaattt cttctatttg ccgcatcatc ctatagttgg gcgaaaactt aggatcgtat      1560
     tcgacgggtc atttaaggac gctaacggag ttgcactaaa tgacgtatta cacattgggc      1620
     ctagtattca acgcaatctc ttttccgtat gcctacgctt cagaatgtat agatacgtat      1680
     tctccgcaga tatcgttaaa atgtttcgcc aaatttgggt aagccccgat catcaaaact      1740
     atcaacgcat tgtttggcga gagcatctat cagcgcctct taagaactat caattagaca      1800
     ctgtaactta tggaaccgct tgtgcaccat acctggctgt acgagtgtta gaacaactgg      1860
     catatgatca caaggagcaa tatcctactg catcgaaaat ccttttggag gatttctacg      1920
     tagacgatgt acttactgga tcgaacaacg agaatgagct aatagctatt aggaatgagt      1980
     tattagaact catgtctcac gccaaattgg aactcgacaa gtgggtgtcc aattcatcac      2040
     gcatctgcag acgcgaatcc agcaccgaac gagaagaaga agcagtaaag gtacttggaa      2100
     tttactggaa ttcaatcgac gatcagctga tgtacaagac atgcttgaca tcaaatccga      2160
     attgtacaaa aaggcaaatc ctatcagatg ttgcgcgtat ctttgaccct cttggcttat      2220
     tatcgccgat tgtggtccaa tttaaaatca tgtttcaaca gttatggcta ttggacctgg      2280
     gctgggacac gaagcttcca ccaaacattg ccgaaccatg gctcaagtgc agagcagatc      2340
     tcgacacgct aaaaaggctg agagtaccac gatttgttcc caacagggag gactcgattg      2400
     aactacacgc cttttccgac gcatcaacca aggcatatgc tgctgctgtt tactgtaggt      2460
     ttcgacatga agacggaaca tattcggttt cattggtggc tgccaaaact agggtagcac      2520
     cactgaaaca acaatcacta ccacggctgg agctttgtgg agcattgctg ctaagtcgcc      2580
     tggtacgatc actcaaggat ggtttacgac acaaggatat acaagtttac gcatggtgtg      2640
     attcaacaat tgtattagcc tggttatcat acccaccatc gaagatgaaa acatttgtcg      2700
     caaatcgaac atcgtaaatt cttgaaacgt tgccacgaca cgcctggcat cacgtaagct      2760
     ccaaggaaaa ccccgcagat tgtgcatcga ggggaatgac ggctactcag ctcatggaat      2820
     ttcacctctg gtggaatgga ccatcttggc tgcgcgatga agatgagtat acagtcaaaa      2880
     tgcaaaactc agaactctct ttgaatattt cagaaaccca tgcacaggac gaattgaaga      2940
     caacagccat gctcactctg aaggagatgg acaattcatt atcagaattt gacgaactag      3000
     tccaccgcgc ctcatcctgg caaaggctgg tacataccgt gggctatgtt ttacgtttta      3060
     ttcaaagact gaaagagccg cgaaaacgag tcgaatccac gatactgtct tttgaagaaa      3120
     tcaaggcagc acaagtagta tgcctgcgga acgcacaggc gtgctttgga gatgacagaa      3180
     ggcttctaca aaaggatcaa ccactgcgaa acaggtcgca gttattcaag ctaaccccgt      3240
     acattggaca ggatggtctg ctacgagttg gaggccgttt gaggcaatct caattaccag      3300
     aagaagtcaa acacccgata ttacttccta agacacacca cattacgaag ctaatcctgg      3360
     aacacgagca ctgggtaaac ttacatccag gcacatctgc actgtttgta atagttcgcc      3420
     aacgatattg gataattgga gcacgcaacc tgataagaaa ggtcacccac aactgtatca      3480
     gatgctttcg ttgaagacac catactacgc atcaactcat gtccgacttg ccaagtatca      3540
     gaatcacaca atcacttccc tttgtcaatt ctggatgtga ttacggtgga ccaattactc      3600
     tcaaggatca aaagggtcgc aacgctaaga agtcaaaggg ctacatatgt ctcgtcgtgt      3660
     gcctcgtcac ctcggcacta cacctggaac tagccactga tctcagcacg gagacatttc      3720
     tggcagctct gagaagattc atgtcgctcc gaggaaaatg tgcacaaatc tacagtgata      3780
     atggcaggaa ttttgtcgga gcaaggcgag cattggacga gatgcaacaa ctcttggcat      3840
     cttcacagca taaggatcga gtctcgcaga cattggcaga tgaaggcatt aaatgggtct      3900
     tcattccacc gtacgcacct cactggggag gaaagtggga gtcttccgta agatcagtca      3960
     agcttcacct gcgccgcgtc attggcaaca ctatcctaac gtttgaacag atgcacaccc      4020
     tattagcaca aataagtgca gtgataaact caagaccact gtactataca ccggacaccg      4080
     acgtcacata tctgtctcca gcacacctgt tgataggcag atcattcaca acaattcccg      4140
     aaggcgacat gagccacata caggaaaatc gactggacta ctggcaggga gttcaagtac      4200
     tataccaagg attctggaag cgctggcacc aggaatacct aactacgcta cagcatcgcc      4260
     ccaagtgggg aaccccgcaa cccaatgtgg aatttggatc agttgttctc atcaaagatt      4320
     ggaatactcc gccagcagcc tggccacttg caagggtaat ctcaactcac acaggaacag      4380
     atggtagagt tcgtgctgtc aaattgaaaa ctgcttcagg agaagcaact cgccctataa      4440
     ccaagatcgc agttttacca aattcagaaa cgatgtttca gggcgggccg ggatgt          4496
//
ID   BEL-5_DAn-LTR repbase;    DNA;    INV; 1192 BP.
XX
AC   AAPP01017073;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DAn_;
KW   BEL-5_DAn-LTR; BEL-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1192
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017073; Positions   11605   12796.
XX
SQ   Sequence 1192 BP; 379 A; 244 C; 262 G; 307 T; 0 other;
     tgaagaacgg aatgcatttg ggcaactttg tatctattca tgttgctgag atttaggcaa        60
     catgaatctt attttccctt aatcatattg taagaagttc tatatacaaa taaccatggc       120
     aacgctgatc gacgcgccgc cattttctta tatacttaat aatttccctt tctcacacat       180
     gtaaatctat gtatgtatac ctaaggcatc attgcgctgc gtcgcattta gtttattcag       240
     ttatttctta accgtcaatc aataaacacc acaaaattca tatacagttc actgagaagc       300
     agtttcattt ctgaccatag taacgtttgg tccttcgagc cggattgact ggaggaataa       360
     ttcaccacta cacggagtat tgccttaaat ggaggaatac aagttgctgg ttgtaggccg       420
     ccgcagactg aagggtagga tcacgaggat cgtgtcctta gctgagcgtt tacctgcaac       480
     acaaacgaag gctggaatcg atgtcttgtt ggatcgactg gatttggcat ggagcgaatt       540
     cgagaagatt ggcgacaaga tatcgcttca cgatgcggtc gatgggtacg tagatccagc       600
     cgacgtctac gaggagtacg aaggaaggta cctgaggaca agggagttac ttgtctcagg       660
     aaagcgctca ctggagccac aaacaagcac tcaaagcaat gagtcaatgc caggtaatgg       720
     agatgcactt ttccggttac tacaacaaca acaacagatg ctagaacgaa tggctgtttc       780
     tgaagcagca agtacaccta tttcacaaga tgacgcaatg aacgcggtag caacgcataa       840
     tgaactaccg aaaattcaaa tcaaacgttt ttcgggagac tacaaggaat ggccggcatt       900
     ttgggatatc tataaaagca ctatccataa gaagcgacaa ctatcagata cacagaagtt       960
     tcactatttg aaatcactat tgaccgatga agcagcgaat ctaattgcac atttgccaat      1020
     tactgacagc gcatatgaaa cagcagtgtc gcgtttaaac gagaggtacg acagaccacg      1080
     ccatattgtg ttttcattat tggaacagtt cacaaagcta ccagaaacaa caaagattga      1140
     tgtatcagtg ctaaggaaag tgactgatgg agcaaacgaa atagttcgtg ca              1192
//
ID   BEL-5_DAzt-I repbase;    DNA;    INV; 5670 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5670
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 786-786 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..5669
FT                 /product="BEL-5_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MESDPNTGAGGNMVTANNGLSLYKRKVQSLYDRMSGL
FT                 GDSFAGDKIDCLNPTEIDVRIEMLAEIRKEFNKAHNELEALNQDEIGSEMR
FT                 NNFDTLFISLKAELLAALELGHSRAAANSTTLPNHSGHSTIIMAHKQRLPE
FT                 LKIPKFSGGYVEYSDFMAMFNSIIDADADLSDIEKFQHLRSSLADVALDSV
FT                 RSLELSSANYRVALDILNKRFSNKRLVFQAHIKKILGLKRVDSPSPKRLRE
FT                 FSDAVNLHMRALQTLGTDLEISNCMIINMLLQKLDAKTQIKWEEQLSSDAI
FT                 PTAMDFYGYLEKRCQKMENLEYATAAPASSAQVGKNHNLPFKKTFVASNSS
FT                 TDSSGCSFCQSAGHGIYSCKMFGNLSPLLRHKEVKKLSLCFNCLKAGHRTR
FT                 ACNSGKCRVCGGRHHSLLHFENLQSTTQCSPDLSAPDLTLQPDAISAAQDS
FT                 ISSSPSPASTSLAAQGLQSDVVLLATAVVLVKNRSGVLVPCRAILDSGSQL
FT                 HLITSRFAHQLQLRRTQSSALVSGLGDTSVATEGSTVNICMHSRTADYATT
FT                 LTALIAPTITDCQPSLAVNVADWNIPSNIQLADPAFFNPQRVDLLIGASIF
FT                 YDLLCVGQIKLCDGLPLLQKTRLGWIVSGGGQRVARSALLATRNSKDSEAD
FT                 MDARLDKTLRMFWEVEACADAVLNTKEELDCEAHFVDHFSRLPSGEYSVRL
FT                 PLKDNGDRLGESYTQAHRRFINLERKLDRDTTLKERYSAFMREYIELKHMS
FT                 LVSPDSRSLCRYFLPHHCVLKEDSTTTKLRVVFDGSAATSTGCSLNDAMMA
FT                 GPVIQPALFSILIRFRTYPVALTGDICKMYRCVRVSPPDNYFQCILWRDSV
FT                 QSEVQVYTLDTVTYGTRAASFLAVRAMHQLAIDEGESYPLGSAALQQDFYV
FT                 DDLISGGSSVAEVMEKMRQTSTILSCGNFKLRKWCSSHQEVLEGTPEDDRE
FT                 KYLRFHDGSDITKTLGLAWDPASDQLLFALSPLDTNSKPSKRSVLSTIARF
FT                 YDPLGLINPVIVRCKIFLQQLWRENLDWDESLPSALHSSWMDLRNSLSAIP
FT                 RISFPRIVHSSATLIELHGFCDASMEAYGACIYVVSREGQLSSNILCSKSR
FT                 VAPLKTLSIPKLELSGAHLLAKLMTNLKDIGSFTGRVYCWSDSSTALSWIR
FT                 DEPSKFQVFVANRVAAIQELTAGMEWRYVPTSLNPADVLSRGSLPHQLIQS
FT                 ELWFHGPSFLVGSKEEWPLPPVPEAATAELRKRVLLIASPHADLTSECKFT
FT                 NSFFGMQRTFAYMHKFVHRLRHSGLTVSDIRQGTHLLIRHIQLSNLWMDIK
FT                 EIRGNGQVRKSSSISSLSPFIDQNGLLRVGGRLGNSSLGFDAQHPLILPKG
FT                 HPITCALIRYYHERNLHAGPRALLAKIRLEYWPIGGIKAVSKVVSKCVRCF
FT                 RTRPRMVQHIMGHLPKERLEGCRPFEVTGVDYCGPFFYRSEIRTRPPIKCY
FT                 ISVFICFTSKAIHMELVKDLTTASFLGALKRFTSTRGRPSQIWSDNATNFV
FT                 GAKNELLELKKLAMSDSHIKEVHESCLADSIDWRFIPPRSPHFGGLWEAAV
FT                 KTAKHHLYRSVGPSVLDFDELRTLICQITAIVNSRPLLSLSENPADLDVLT
FT                 PAHLLLGGPHETILEPDLTKLNYNRLDGWQRVTQLQQIFWSRWREEYLTLL
FT                 QERSKWRTPTQNLCVNDLVLIKDENLPPMRWPLARVVEVFKGKDGVSRVAD
FT                 LRTATGTVRRAVTRLCVLPLKESVERLASNGGS"
XX
SQ   Sequence 5670 BP; 1391 A; 1395 C; 1341 G; 1543 T; 0 other;
     ttggtgaccc cgacgtgatt aaagacattg gctaatcgcg tttcgtataa aacatttaaa        60
     ttaaacatta ttcgggtctg tgaaatttaa atcacaacca aatacatttg tgcagcgttt       120
     aaaacggttt atgtgcaaat tcagtgcgag tgcggccgtc tgagattccg ttgctttaat       180
     cgttcgaatc tctcattcta tgctcagccg cagacactgt cgttgacttt tcgtgtctct       240
     cattctcgct ccagccgctg ttcaccgtcg cataatcgtc gaatcttcca ttctctgcac       300
     aactgcagcc acggtttcgg ctttcgtttc atctctttct cgattttgta ctcagtcgct       360
     taaacggtta tctattctcc gctggttcgt tgcatttcac accgttaagc atggaaagcg       420
     atccaaatac aggcgcgggc ggaaatatgg tgacggctaa taacgggctg agtctctata       480
     aacgcaaagt tcagtcgtta tatgatcgaa tgagcgggct cggcgactcc ttcgctggcg       540
     ataagatcga ttgtttgaac cccacggaaa tcgacgttcg aattgaaatg ctggcagaaa       600
     ttcgaaagga gtttaataag gcgcacaacg aactggaagc actcaatcag gacgagattg       660
     ggagtgagat gcgcaacaac tttgatacgc tcttcatatc gttgaaggct gagctattgg       720
     cggctctcga attaggccac tcgcgcgctg ctgccaattc gacgacccta ccaaaccatt       780
     ctggacacag taccatcatt atggctcaca agcagcgact tcctgagcta aaaataccca       840
     agttctccgg tggatacgtc gaatattcgg attttatggc tatgttcaat tcgatcatag       900
     acgcggatgc ggatctcagt gacatcgaga agttccagca ccttcgctct agcctcgctg       960
     atgtggcttt ggattcggtt cgatctttgg aactctccag tgccaattat cgtgtggcgc      1020
     tggatatact aaataaacgt ttcagtaata aacgacttgt ttttcaggca cacatcaaga      1080
     agattcttgg gctcaagaga gtggattcgc catctcccaa aaggcttcgg gagttttcgg      1140
     atgcagtcaa cttacatatg cgcgctttgc agacattggg aacggatttg gagatatcca      1200
     attgcatgat aatcaacatg ctgctgcaga agttggacgc taagactcaa attaagtggg      1260
     aagaacaact gtcgtcggat gctataccta cagcaatgga tttctatgga tacttggaga      1320
     agcgatgcca gaaaatggag aatttggaat acgctacagc ggcacccgct agcagcgctc      1380
     aggtgggaaa aaaccataac ttgccgttca aaaaaacgtt tgtagcctcc aattcttcaa      1440
     ccgactcgtc tggatgcagt ttttgccagt cagcgggaca tggcatatac tcctgcaaga      1500
     tgttcgggaa tttgtctccg ttgctgcgcc acaaggaagt gaagaagctt tccctttgtt      1560
     tcaattgcct gaaggcaggg catcggactc gtgcatgcaa cagtggaaaa tgtcgagttt      1620
     gcggtgggag gcatcatagt ttgttgcatt tcgaaaatct gcaatccaca actcagtgct      1680
     ccccagatct ttccgctcca gatctaacgc tccaaccaga cgctatttct gccgctcagg      1740
     attctattag cagctcacct tcccctgcct ctacctctct tgctgcccaa ggtcttcaat      1800
     ctgatgttgt gcttctggct accgctgtgg ttcttgtaaa gaatcggtct ggcgttttag      1860
     ttccttgtcg tgccatacta gattcaggat ctcagcttca tctcatcaca tccaggttcg      1920
     cccatcagct tcagcttagg agaactcaat cgtctgcact tgtctctggg ctcggcgaca      1980
     ccagcgtggc tacggaggga tccaccgtga atatttgtat gcattctcgc acagctgact      2040
     atgcaactac gcttactgct cttatagctc ctaccatcac cgattgtcaa ccaagtctgg      2100
     cagtcaatgt agccgactgg aatattccat ccaatattca gcttgctgat cctgcatttt      2160
     tcaaccctca gcgagtggat ctcctcatcg gtgctagcat tttctatgat ctcctctgcg      2220
     tagggcaaat caaactctgc gatggtctgc ctcttctgca gaagacccgg ctcgggtgga      2280
     tcgtatctgg cggtggacaa agggtagcac gctcggcgct cttggcaacg cgcaattcta      2340
     aagattcgga agctgacatg gatgcaaggt tggataaaac tcttcgtatg ttttgggagg      2400
     tcgaggcttg tgcggacgcc gttttgaata cgaaggaaga attagattgt gaagcgcatt      2460
     tcgtagacca cttctcacgt ttgccatcag gagagtattc agttcgtctc ccgctaaagg      2520
     ataatggcga tcgcttaggg gaatcctaca ctcaggcgca tcgtcgtttc atcaatttgg      2580
     agcgaaagtt ggatcgtgat actacactta aggagcggta ctctgccttt atgagggagt      2640
     atattgagtt gaagcatatg tccctagtca gccctgattc tcgtagtctc tgcagatatt      2700
     tcttgccgca tcactgtgtt ttaaaggagg atagtacgac tacaaagctt cgtgtcgttt      2760
     tcgatggttc ggcagccaca tcaactggat gttccctaaa tgatgcgatg atggcaggcc      2820
     ctgttattca gcctgcgttg ttcagcatac taattcggtt tcgcacatat ccagtcgctc      2880
     tcactgggga catttgtaaa atgtaccgct gcgtacgagt gtctccacct gacaattact      2940
     ttcaatgcat tctatggcga gattctgtcc agtccgaagt tcaggtctac acattagaca      3000
     ccgtcacata tggcactaga gctgcatcgt ttttagcagt tcgcgcaatg caccagctgg      3060
     ccattgacga gggtgagtcc taccctcttg gctcagctgc tctgcaacaa gatttttacg      3120
     tggatgatct catctcgggc ggcagctctg tcgctgaggt catggaaaag atgcgtcaaa      3180
     cctctactat actttcttgc ggcaacttta agcttaggaa atggtgctct agccatcagg      3240
     aagtacttga aggaacgcct gaagatgaca gagagaaata cttaagattt catgatggaa      3300
     gtgacataac gaaaactctt ggcctagcat gggaccctgc atcagatcag ctgctttttg      3360
     ccttgtcccc gctggacaca aattcgaagc cctccaagcg atcagttttg tctacgattg      3420
     ctcgtttcta cgaccctctt ggattgataa atcccgttat tgtcaggtgc aaaatctttc      3480
     ttcagcagct ttggagagaa aacttggatt gggatgaaag cctaccctca gcgttgcatt      3540
     catcttggat ggacttgaga aacagcttgt cagccatccc gcggatatca tttcctcgca      3600
     ttgttcattc ttctgctact ttaatcgaac ttcacggatt ttgtgacgcc agcatggaag      3660
     catatggcgc ttgcatatat gtggtgtcca gggaagggca gttgtcgagc aatattttgt      3720
     gctcaaagtc tcgagtggcg ccactaaaaa cgttatcgat ccccaagctg gaattaagtg      3780
     gagcccattt gctcgctaaa ctaatgacta acttaaaaga cattggaagt tttacaggtc      3840
     gggtttattg ctggtcagat tcatcgacag cactatcttg gatacgggat gaaccatcca      3900
     aatttcaagt cttcgtggca aatcgagtgg cagcaattca agagttgacg gcaggcatgg      3960
     aatggcgcta tgttcccaca tctttaaatc ctgctgacgt tctctctaga ggatcgcttc      4020
     cccaccaact tatccagtca gagctgtggt ttcacggtcc atcatttctg gtaggctcca      4080
     aggaagagtg gcctttacct cctgttcctg aagcagcaac ggcagagctt cgcaagcgtg      4140
     tattgctgat cgcgtctcca catgccgatc tcacttcaga atgcaaattt acaaactcat      4200
     tcttcggcat gcagcgcaca ttcgcctaca tgcataaatt tgttcatcgt cttcggcatt      4260
     ctggactcac cgtttctgat attcggcagg gaacgcatct tctaatccga cacattcagc      4320
     tgtctaactt gtggatggat ataaaggaaa ttcgaggcaa tggtcaagtc aggaaatcca      4380
     gttcaatcag ctcactctct ccgttcatcg atcagaatgg attactaaga gttggaggtc      4440
     gtcttggaaa ctcatctctg ggatttgatg ctcagcaccc gcttattctg ccaaagggac      4500
     atcccataac ttgtgctctg ataaggtact atcacgagag gaaccttcat gctggacccc      4560
     gcgcactact tgccaaaatt cgactggaat attggcccat tggcggaatc aaggcagtat      4620
     ccaaagtagt cagcaagtgt gtgagatgct tcaggactag gccgcgcatg gttcagcaca      4680
     tcatgggaca tctgcccaag gagcgattgg agggatgtcg accctttgaa gtcactggag      4740
     tggattactg tgggcccttt ttctacagat cagaaatccg cacgaggcca cccatcaagt      4800
     gctacatcag tgtattcatt tgctttactt ctaaggctat acacatggag ctcgtaaagg      4860
     acctgaccac cgcttcgttt ttaggcgcat taaagcgttt cacttccacg cgaggaaggc      4920
     caagtcaaat ttggtccgac aatgcgacca acttcgttgg cgccaagaac gagcttttgg      4980
     agctcaagaa actagctatg agcgactcgc atatcaaaga ggtccatgaa tcctgcttgg      5040
     ctgactcgat cgactggcgc ttcatcccac cacgctctcc gcactttggc ggattgtggg      5100
     aagctgccgt gaagacagca aaacatcacc tttaccgctc agttgggccc tctgtgcttg      5160
     acttcgacga gctgcgcacc ctgatctgcc agatcacggc aatagttaat tctcgccctt      5220
     tgctctcact ttcagaaaat cctgctgatt tagatgtcct gactcctgct catctgcttt      5280
     taggtggtcc acacgagaca atcctcgagc ctgacctaac gaagctcaac tacaatcgtc      5340
     tggatggctg gcaacgggtc actcaactgc agcagatatt ctggagccgc tggcgcgaag      5400
     agtatctaac tcttttgcaa gagcggtcga aatggcggac tcccacgcaa aatctttgcg      5460
     taaacgatct cgtgctgatt aaggacgaaa atcttcctcc aatgcgttgg ccactggcta      5520
     gagtggtcga ggtcttcaag ggcaaggatg gagtgagccg cgtcgctgat ttaaggactg      5580
     ccacaggaac cgtcagaagg gccgttaccc ggctatgtgt actgcccctc aaggaatctg      5640
     ttgaaagact ggcttccaac ggggggagta                                       5670
//
ID   BEL-5_DAzt-LTR repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-363
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 751-751 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 363 BP; 101 A; 91 C; 80 G; 91 T; 0 other;
     tgttcgggcc agccgctaaa caacaggcct aacttagaat acatagtaca tatttagaac        60
     ataaaggcac tgtaaacacc aacgttcggc agcgctgctg cgctctccct ctgtaaaggg       120
     cgctctgcag ccgccgcgtc ggctctagct ttgttaagcc gacggtgcca ataatcagta       180
     atctgctaac ctctctgcgc attggttgca tttggatctc gagttcacat ttatctggcc       240
     gggcaaagag caagcaatcg gcttccgcta gccgccagta taaataaacg ctattaaatt       300
     tggaacaatt cggtgtatta ttttggacaa aataggtgcc aaaaaagctt ggcatctcaa       360
     aca                                                                     363
//
ID   BEL-5_DBp-I repbase;    DNA;    INV; 8289 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DBp_;
KW   BEL-5_DBp-LTR; BEL-5_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-8289
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 632-632 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1614..2657
FT                 /product="BEL-5_DBp-I_1p"
FT                 /translation="MPTGDDQKPRPIPTIRLDRSQSASPRTPLLKPKAYSA
FT                 IPRAKSDESVNTIPGPSQRQTRSVAKMAQSAVDVALKKFIATTDRISQFEA
FT                 NINTPGARETEXGSQYICEVHRDQIRALWEKVEKSYESCSDLLAVSDDNAA
FT                 TSTVLESKYSYCYSVYSRCIAQLREKIASQSTQASVNVHTPAPTGCRLPPV
FT                 DTEVFAGDYLRWPTFRDLFTAIYIQNSRLTPVERLFHLLSKTSGDAHAIVS
FT                 KAPLTHEGFVVAWQSLTDRFENRRLLVNSQLKILFNLQAISQESGVALKEL
FT                 QATIQSCLTALAMSAINVEAWDCLLVFMISSKLPKVTLSMWEQSVIIRPKF
FT                 QHGRN"
FT   CDS           2917..7005
FT                 /product="BEL-5_DBp-I_2p"
FT                 /translation="MFELFCPRAPATRLHERPYLLHMSQPTPHPPAPRQSV
FT                 RHRSKSAYDSKGSTRTDCQKHKRLRGSVGCAGVLRFRVRSRPTGHGPYQRV
FT                 PFGVQLPGTSTDRLRVRSDLHNGTTVQPRQAPFKTIQAQVSGLNQTISAQS
FT                 TKLCHFSIRSPSRPGLQLETAAYVLPQLAGNLPSYPIPRDRLKGLPDIPLA
FT                 DPNFFESSQVDVLIGADILPSILLGNAKANICGSLLGQETIFGWVLTGPLS
FT                 PANPRSVSVFSTRVAPSLGDSLDQLLTKFWEVEDVPTQISSESDSVCEHNF
FT                 VQTTRRDECGKYVVTLPLRDPGQKGSELAASRSFALAQFLRNEQRLKRDPP
FT                 LKARYDSVIQEYIDLGHMTEVSPASNSATYYLPHHAVFKPESTTTKVRVVF
FT                 NASSPSANGTSLNDILYAGPVLQSDLTIQILKWRYFRFVFNADIEKMYRQI
FT                 WVDPKHTPLQRILFRNPDGDIRDYELKTVTFGVNCAPFLAIRVLRQLADDE
FT                 ESKYPQASQVIRQFMYVDDVLAGADSKTEAQAAIRELKGALESAGFPLRKW
FT                 TSNSKAILADIPSDHRLRADFLDIDAESTAKTLGVRWKATTDEFFFVPPEL
FT                 TSGSAFTKRQVLSQIAKLFDPAGWLAPFIVRAKMFMQDIWLLDLGWDDALP
FT                 QDFCQRWVDFLKNYSVLDQIRVPRWVAFRPHLKVEHHGFCDASQKAYGAAI
FT                 YVRVEVGSTVIVTLLTAKTRVAPVKTVSLPRLELCGALLLSEMATAVLPKM
FT                 PGAASALYCWTDSTIVLAWLHKPACQWTTFVANRVTKITQFTDVQKWAHVR
FT                 SEQNPADLASRGVALQDLADNQLWWHGPDWLQRPRSDWPTQGNDAPVTELE
FT                 KRAVKVHVAKAPPEDLLERFSTLDKALRVLAYVNRFIQRARKIRPSFEEHL
FT                 TANEVTSAERLLVSVTQRRHFVSEMGCLSEKRPISASSPIQNLNPFVDSQG
FT                 LMRACGRVTSSELLQYDERHPIILPYDCHLSRLLVHFTHRITLHGGSQLMI
FT                 RLIRAKFWIPRVRNLVKSVVYSCKVCVIHKKKLQTQLMGELPKERTSFSRP
FT                 FTHTGVDYAGPFEIKNYTGRACLITKGYVLVFVCFSTKAIHLEPTSDLTTE
FT                 KFLAAFARFVSRRGCPRQVQSDNGKTFVGAAALLSRDFLQSLKGAVTGAYS
FT                 HQQLLWHFIPPGAPHMGGLWEAGVKSFKTLFYKSTATRKYTFEELATLLAK
FT                 IEACLNSRPLAPMSEDPADLLALTPGHFLVGGPLLATVEPEIKGDTNSIIN
FT                 RWQHLKALQQQFRLRWKEEYLKELHKRNKWRAPTRDLRVGDMVVIKEDNLP
FT                 SNEWRLGRVDAVYPGSDGHVRVIDIRTARGLVKRPVAKVVLLPLDASAYPQ
FT                 "
XX
SQ   Sequence 8289 BP; 1868 A; 2421 C; 2032 G; 1964 T; 4 other;
     cattttggtc cttcgagccg gatacaggat attttggtac taggatatcg tccaccagca        60
     gtccaggcat tgttccgcca aaagataagt acgaaatttt ttccgtctcc gtctctctgc       120
     cggtcttcag cagtggtccg aacattaaat ttcgttcaca ctgctgcaag attgtttttc       180
     cctccgtgtc aactccaagt ccgagttttc cgacaccacg gcagcttgag acttttcaaa       240
     aaacaaaatt ttccatccat ctccgttgtg tgtgcctcgc catttcccgc cgtttttgcc       300
     cttccctcct cgcaacgtca gcataacatg catctgtttt gtaaaaaaaa aatccgcaag       360
     tgaacagtga aagtgtgtgg tgaaaaaaaa aagggcataa ttaatattgg ccagccggtg       420
     tgaagtggtt ccgggaatct ccaagttcac cgaacagtcc gccgctgtcg taatattggt       480
     ttttcttccc caattttttt acaccacata acttttccgt tcccgcagtt acatattatc       540
     gacgctccac tgtgccaaca tatgcccaca tgcccttaca tatatccgta cctgcatgca       600
     tgtccacata tctccaaata ttttctgcct ccgatttcag gaaatatata accgataaaa       660
     tttaacctat acagtccact tatcgacgtt ccactgtgcc atcatatgcc ccacatgccc       720
     ttgccctact tgcatgcatg cccatatatt tctcaatatt ttctgcctcc aatttcagga       780
     aatatataac caaacaaatt aaaaaaaaaa maattaatta taaatttatt tatttataat       840
     tataactaca aaaatttatt taattcgtat tttccgtccg agcaaagggc caggtttttt       900
     aattcacctt tccggccact caataattaa agtcgaaaat ttaattatcg aaaaaaaaat       960
     tataattaaa taatttaatt gtcgatcttc tttctgaacc tagccgcggt ttcaattcca      1020
     ccgttccagc ttcgggttac ttaacctcca ttgattaaaa attgaaattt tcaactccac      1080
     ccgtctgttt ccataataat taaatccgac aattaggcaa aaattaatta tttatttttt      1140
     tctctgtgtt caatccaagc caaggtcaag tccacctttc cggctccgca aattcgaaaa      1200
     tagttaggaa ttgaatattt acgtacgagc catactggtc gaaatataca tatatagaca      1260
     gtcatcaatt atttttccga acgagcacga attttccggt ccttgtccat tttccgttcc      1320
     gtcattttcc taacgctgct tctactccgc atctggcaac atccgcctag aatctcaaca      1380
     aaccttggcc catctggttt ttttggcttc ctgaagtttc tcccacatcc gaattgtgcc      1440
     gcatccgacg ttcctctcga catcggcgct actaattccc acttggcctt gcaatcgcat      1500
     ttcgtccgcg atctcaccgg tctcatcaca ttagtgaccg gctaccgctt cgtacgaggc      1560
     acctattgcg cgcgtcagtc gacaagcgct gaccagcgaa ttggtgtctg agaatgccca      1620
     cgggagacga ccaaaagcca cgtccgatcc caaccatccg tttggacaga tctcaatccg      1680
     cttctccgcg gacgcctctt ttaaagccta aggcgtacag tgccattcca agggcaaaga      1740
     gtgacgaatc cgtcaataca atccccggtc cttcacagag gcagactcgt tccgttgcaa      1800
     aaatggctca aagtgcggtc gacgtggcgc tgaaaaagtt catcgccaca acagatcgaa      1860
     ttagccaatt tgaggctaac ataaatactc cgggcgccag agaaacggaa gkaggctccc      1920
     aatacatttg cgaggtccat cgggaccaaa ttcgggcact gtgggagaag gtggagaaaa      1980
     gctatgagag ctgctccgat ttactagccg tgtcagacga caatgcggcc acctcgacag      2040
     tgctggaatc gaagtacagc tactgttact ccgtctattc gagatgtatt gcccagcttc      2100
     gggagaaaat tgcttcccaa tccactcagg cttccgtcaa tgtccacacg cccgcgccta      2160
     caggctgccg gttacctccg gtggataccg aggtcttcgc gggtgattat cttcggtggc      2220
     ccaccttcag agacttgttt acggccattt acatccaaaa ctcgcggctc accccggtag      2280
     agaggttgtt ccacttactg tccaaaacaa gtggtgacgc ccacgccatt gtctctaagg      2340
     ctccgcttac ccatgagggg tttgtcgtcg cttggcaaag cctcacagac cgctttgaga      2400
     accggcggct attggtcaat agccagttga aaatcctttt caacctccag gctatttctc      2460
     aagagtccgg ggtcgcgctg aaggagctsc aagccaccat tcagagttgt ctgacagccc      2520
     tagcaatgtc cgccatcaat gttgaggctt gggactgcct cctggtgttt atgatttcgt      2580
     caaagctccc caaagtcaca ctttccatgt gggagcaatc cgtcataata aggccgaaat      2640
     tccaacatgg aaggaattag acaacttcct gacagagcgc catcgcactc tggaggcaat      2700
     cgacgacgtc aggcctagtg gctccgggca acttccgcca aggtcgggaa ctcctactgc      2760
     ccctgctcga aggctcaatt catacgagac tcgagtggtt ccgggcccca agggttgcga      2820
     tctctgttcg agggagaacc accccattcg cttatgtccg cggttcctgg aaatggacgt      2880
     aaatgggcgc tcggactaca ttaaaaggaa gcagttatgt ttgaactgtt ttgcccgagg      2940
     gcaccagcaa cgagactgca cgagcgccca tacctgcttc acatgtcaca gccgacacca      3000
     caccctcctg caccgcggca atccgttcgc caccgctcca agtccgccta cgacagcaag      3060
     ggctcgaccc gcacagactg ccagaagcac aaacggctca gaggatcagt cggatgtgca      3120
     ggtgtgcttc gcttccgggt caggagccgt cctactgggc acggccctta tcaacgtgtg      3180
     ccatttgggg tgcagcttcc aggcacgagc actgatagac tcagggtccg aagcgacctt      3240
     cataacggaa cgactgttca acctcgtcaa gcccccttca agacgattca agcccaagtt      3300
     tccggcctta atcagaccat ttccgcgcag tctactaaat tgtgccattt ctccattcgg      3360
     tcgccgtcta gacccgggct acaattagag actgcggcct acgttcttcc gcagttggca      3420
     ggaaatctgc catcataccc gattccgcga gatcgtctca aggggctgcc cgacattccc      3480
     ctggcggacc ccaacttctt tgagagctcc caagtcgatg tgttaatagg agctgacatt      3540
     cttccgtcca ttctcctcgg taatgccaag gctaacatct gcgggtcgct tctcggtcag      3600
     gagaccattt ttggatgggt gctgacaggc ccattatctc cagccaatcc ccgcagcgtg      3660
     tccgtttttt ccacacgagt ggcccccagc ctcggtgact cactggatca gctcctcacc      3720
     aaattctggg aggtggaaga tgtgcccaca cagataagtt cggaatcgga ttcagtttgc      3780
     gagcacaatt ttgtccagac gacgagaaga gacgagtgtg gcaagtacgt tgtgacgctc      3840
     cccttacgcg accccgggca gaagggttcc gagctagcgg cttcacggtc ctttgccctt      3900
     gctcagttcc tgcgtaatga gcagcgcctg aagagggacc cgccccttaa ggcccgctat      3960
     gactcggtaa ttcaggagta catcgactta ggccacatga ccgaggtctc tcccgcgagc      4020
     aattccgcta cctactatct tccacatcat gccgtcttca agcccgaaag cacgaccacc      4080
     aaggtgcgag tggtcttcaa tgcttcgagc ccgtccgcaa acgggaccag tctgaacgac      4140
     attctttacg cgggcccggt cttacaatcc gacctgacga ttcaaatcct aaagtggcga      4200
     tactttaggt ttgtcttcaa cgccgacatc gagaagatgt atcggcaaat ttgggtagac      4260
     cccaagcata ctccgctcca acgtattttg tttcgcaatc ccgatgggga tatccgcgac      4320
     tacgagttga aaacggtcac cttcggtgtc aattgtgccc cgttcctggc gatccgtgtg      4380
     ctgcgacagc tcgctgacga cgaagagtcg aagtatccgc aggcaagcca agttatccgg      4440
     cagtttatgt acgttgatga cgttctcgcg ggggcagact ccaaaactga agcccaagct      4500
     gcgattcggg agctgaaagg ggccctagag tcagcagggt tcccacttag gaaatggacg      4560
     tcgaatagca aggcaatcct ggccgacatt ccgagcgacc accgtctccg tgctgacttt      4620
     ctcgacatcg atgcagagag cacggccaag acactcggcg tgcggtggaa agcgacgact      4680
     gatgaattct tttttgtccc gccagaattg acttccggct cggctttcac gaagcgccaa      4740
     gtcctctccc aaattgccaa attgttcgat ccagcaggtt ggctcgctcc tttcattgtt      4800
     cgggcaaaaa tgttcatgca agacatttgg cttctggatc tagggtggga cgacgccctc      4860
     cctcaagatt tctgtcagcg atgggttgac ttcctaaaga attactcggt gctcgatcag      4920
     attcgtgttc ctcggtgggt cgcgttccga ccacacctaa aggtcgaaca ccacgggttc      4980
     tgcgacgctt cacagaaggc gtacggcgca gcaatttacg ttcgtgtcga ggttgggtcc      5040
     acggtaatag tgaccctgct gactgcaaag actcgagtgg ccccagttaa aacggtgtcg      5100
     ctccctcggc tagaactgtg cggtgccttg ttgttgtccg agatggccac cgccgttctg      5160
     ccaaagatgc caggggccgc gtctgcccta tactgttgga ccgactcgac tattgtcctc      5220
     gcgtggctgc ataagccagc gtgccagtgg acaacgttcg tggccaaccg ggtgaccaag      5280
     atcacccagt tcaccgacgt gcagaaatgg gcacatgtcc gctccgagca gaaccctgcg      5340
     gatctcgcta gccggggcgt agctctccaa gatcttgcag ataaccagtt gtggtggcac      5400
     ggtcctgact ggctgcagag gcctcgcagc gactggccca ctcaaggcaa tgatgccccc      5460
     gtgactgaac tcgagaagcg agcagtcaag gtccatgtcg cgaaagcgcc ccccgaagat      5520
     ctccttgagc gtttttccac actcgacaag gcattacgag tccttgccta tgttaatcgc      5580
     ttcatccagc gcgcgcggaa gattcgaccc tcgtttgaag agcacctgac cgctaatgag      5640
     gttacgtcgg ctgaacgtct tctagtttcc gtcactcagc gcagacactt cgtctctgag      5700
     atgggctgct taagcgaaaa gcgtccaata tcggcatcca gtccgattca aaatctgaac      5760
     cccttcgtgg attcgcaagg ccttatgaga gcctgcggcc gggtcacgtc ctctgagctt      5820
     ctccaatatg acgaacggca ccctattatc cttccgtacg actgtcatct gtctcgactc      5880
     ctggttcatt ttacacatcg catcacgctg cacggtggca gtcagctgat gatccgtctg      5940
     atccgggcca aattctggat tccaagggtg aggaatttgg tcaagtccgt cgtctattct      6000
     tgtaaggtat gtgtcatcca caagaagaag ttgcagacgc aactcatggg agagctaccc      6060
     aaggaacgga cgtccttctc gcgcccattc acgcacaccg gtgtggatta tgccggtccc      6120
     ttcgagataa aaaactatac ggggagggcc tgtctcatca caaagggtta tgtgttggtg      6180
     tttgtgtgct tctccactaa ggccatccat ttagagccta cgtcggacct tacgaccgag      6240
     aaatttctgg cggctttcgc acggttcgtg tcccggagag gatgcccccg tcaagtgcag      6300
     tccgacaacg ggaagacctt tgtgggagca gctgctctac tatcccgcga ttttctccag      6360
     agcctaaagg gggctgtgac cggtgcctat agtcaccagc agcttctctg gcatttcatt      6420
     cctccgggag ctccccacat ggggggcctt tgggaagcag gggtcaagag cttcaagacc      6480
     ttgttctaca agtccaccgc cacgcggaaa tacacctttg aggagctggc tactctcctg      6540
     gcgaagatcg aggcgtgcct gaattcgcgg ccactcgcgc caatgtccga agaccctgct      6600
     gacctgctgg ctcttacacc cgggcacttt cttgtgggag gcccacttct cgccacggtc      6660
     gagcccgaga taaaggggga caccaattcc atcatcaatc gctggcaaca cctcaaggcg      6720
     cttcagcagc aatttcggct ccgatggaag gaggagtacc tcaaggagct ccataagaga      6780
     aacaagtggc gagcccctac gagggacctc cgcgttgggg atatggtcgt catcaaggaa      6840
     gacaaccttc cgtccaatga gtggcgttta ggcagggttg acgcggtgta tcccggctcc      6900
     gatggccatg tccgcgtgat cgacatccgc accgcgcgag ggctcgtaaa gcggcccgtt      6960
     gctaaggtcg tgcttcttcc gttggacgcg tccgcctacc cacagtaatt aacatttctt      7020
     ccgctccaat gttcctgtcc attgtgctgt cccgtagctc tgcccgtagt tccgaacctt      7080
     catttacacc gattctgatm atgttatttg ttccttcatc atatttccgt cagccatagt      7140
     caacacgatg tcgccacgtc cacgcaacac ccacgcatcg ctggagagca gatgtactcg      7200
     aggtattcaa tcctaccgtt gccgagtctg caatggaatc cacgccttga agaagtgtcg      7260
     gcgcttccta cgccttagcg ccgagaagcg gctccgagcg gttctcgtga accggtattg      7320
     ctcgagctgc ctggcccacg agcactccga cggatcctgt cggcggggtg acggttgtaa      7380
     gacgtgtggt caggatcacc acacgctgct gcacctcgtg gagaagccgc gggctcggcg      7440
     caaggcacgc caagaggagc accggtcacg gagcgcggga gtcaggacac ggagtgtctc      7500
     gtctggcgcc cggccgtcat ccgccaactc ccggcgcggt tcgggtgctc ctcggcctgg      7560
     gtccgccact ttccggcaat cccaacccga tccacggcca ccgacgtccc ggcactcgtc      7620
     gatacatcct cggcattctt ccgccactcc tcggttgccg accaccgctc atccgcccgc      7680
     gtcatccgca cctaggcaaa tgttccgcct ctcgtcgagg gcccccgcag gacgcggtcg      7740
     ctgcgcccac cctctcgtcg ctgctgcagc ggaacagcgt caacgtgctg ccgactgcac      7800
     tagtgcggat cgacaccggg acccggagct tcgacacggg ggccctcatc gacccatgca      7860
     cgccctcgag ctgcatcgac gcctcgctcg ctgcgtgttt ccggctgccc actaccagcg      7920
     tgggggacga acaggtgtgt tccgccaccg tggggtcaac gaccgatgat agcgttcggc      7980
     tggaggtcat gtttaagatt gagcctcacg tgcgagttcg tacgccgtcc cgggagctga      8040
     gcgaggcggt gcgtgcccac ttccgaggcg tgacactggc ggatgagcga ttccatctgc      8100
     cagcgacaat ctccgtcgtc ctgggcgcag atatgtaccc acggattatc caaccgggct      8160
     tcctgaagat ccaggacgga ctgccagtgg cccagagcac cgtgtttgga tgggtcgtgt      8220
     ccggagcctg ccaccagcca taacatcgag ggagctattg caacccgagc gattgcaagg      8280
     ggggcggaa                                                              8289
//
ID   BEL-5_DBp-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DBp_;
KW   BEL-5_DBp-LTR; BEL-5_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-300
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 633-633 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 300 BP; 56 A; 95 C; 68 G; 79 T; 2 other;
     tgtttaggtg aggggccgtg gtgccgctca cctgaagagc gcatccgcgc tgaagagcgc        60
     acccgcgcta aagagcgcac ccgcgctgaa gagcgcatcc gcactcgccc ctctgtgccc       120
     tctcttctcg ctcgttggtt gtcgtcgatc gtctcttttt gtactagttt ttaagttgtc       180
     aatcccatgt amgcagccaa taaagctgaa cgcgtttttt tacctgaact gaagacgccc       240
     ccgacttctt atttcaaccc ccattctgga atctttttgc ggcascaacg cccccctaca       300
//
ID   BEL-5_DEl-I repbase;    DNA;    INV; 8143 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   25-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DEl-I;
KW   BEL-5_DEl-LTR.
XX
NM   BEL-5_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-8143
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 433-433 (2012).
XX
RN   [2]
RP   1-8143
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (25-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           897..1586
FT                 /product="BEL-5_DEl-I_1p"
FT                 /note="DUF1759, DUF1758, reverse transcriptase and
FT                 DUF3609."
FT                 /translation="MLSAETIALIKRQVEITKLIHTLRELPSLSFEYLKQY
FT                 EELRSECVQNHSVLVQIGVVDHDYFKKNHYEKMMIDLSNIKDRINRVLNKA
FT                 DEVDLEASSSKVVNKLDRAIVQVREYLKETFEDIKLDNVSTFEIRVQKLEF
FT                 YWTKIVGLKQVDQVDVTDRGYDEELNELEFDISSITNTMKKKSNKLCPERL
FT                 TLEIIKLMICQRYLKFRYPRSMEIPKTGTCFMSCLMNSFI"
FT   CDS           1379..7906
FT                 /product="BEL-5_DEl-I_2p"
FT                 /translation="RGVERVRVRHLVNNQHNEKKIEQIVPGKVNVGNHKID
FT                 DLPTLPKIQVPTFYGDSKDWDLFYELFNELIHLREDLSPSFKFSYLKISLK
FT                 GEARNVVSHLLLGSGENYEAAWELLTKRYENKRKIFSDQLNRLLDLQIVNV
FT                 DSVRQLKIFIDTINESIHMIKLKAQLSDEVDIMFAHIIIRKFNKEALQLYE
FT                 SHVKKTKEIQALSDVIEFLEQRLSSISSVQDEKPVKKIYSSNIRELATNNC
FT                 PICKISGHFIFQCQKFKVLNPSERMEKVKNAHLCFKCLKHSFNKKCQSDIS
FT                 CSICKKNHHSMLHINYNVNQKLEKVNTCRTSEQALLATARVQIKSSNGGFE
FT                 NFRALIDSGSQSTIISEESVQILKLQKIRSQTEISGVSSTGKCISKHKIHL
FT                 SIKCNASQKILKVEALVLPKLMRALPAHKVNVDKTKWEKYNLADPDFNKPG
FT                 RVDLIIGADLYTDILQSGVVKINGLLGQKTDFGWIISGCKKSKGQKTIVAT
FT                 TIELKDMDRYWEVEDEDKNDIESEICENNFTKTTKIDSDGRYIVSIPFKDD
FT                 VTLGDSKKQAMARFMNLEKKLKRNEKLRADYTNFINEYMNLGHMVEVQNEG
FT                 KYFLPHQAVIRDSSLTTKLRVVFDASAKTTNNKSLNDIMWVGPRVQKDIFD
FT                 IIVKWRKWEYVVSADVEKMYRQIKIDDEDQQYQYILWRNSPDEKIKNYKLT
FT                 TVTYGTASAPYLATRVLVDIADKCKNKYLSEIIRNDFYMDDLMTGADSVED
FT                 ANNLIKLISKELQKVGFNLRKWVSNNFKVTQTVENTGDNKVLAITENESVK
FT                 TLGLQWEPQKDLFKFKVNCGESKKTNKRVVLSTLSKIYDPLGWLAPVTVLG
FT                 KLFIQKLWINKSEWDQELSKEDKDYWENYKESLLSLEKIRIPRWISSKNCL
FT                 GIQLHGFADASEKAYAAVVYAKVGNSVNIIASKSKVNPIKNRKTIPKLELC
FT                 AAHLLSGLIKRINESIDNTVEIYAWSDSTITLAWINNGDSKVKFIRRRTDD
FT                 IRKLKNTEWNHVKSEENPADLASRGISSSQLVNCDLWWKGPKWLSEPKEQW
FT                 PHQESTGEIVLINSILNNKTDNPIYNLLERFSSIEKIIRVIVYINRFIQIK
FT                 IKKESYPSFLSVKELKLAEKIVIRKQQEYQFSQEIKCLKTNKEIKTNNRIL
FT                 SLNPFLDNDGILRVGGRLENSGAEFKVKHPIILDKCHLTNLLIKNAHNETL
FT                 HGGINLMRNYIQRKYWIFGLKNSLKKYLKECVKCARYKQNTAQQIMGNLPR
FT                 YRVTMSYPFFNTGIDYAGPYFVKCSKNRGLKTYKGYIAVFVCMATKAIHLE
FT                 MVSDLTSEAFLAALRRFIARRGKCANIYSDNGTNFVGASRKLDQDLVKAIK
FT                 ENTMIAAQLEKDRIDWHFIPPAGPHFGGIWEAGVKSMKYHLKRVIGENSLT
FT                 YEEMSTLLCQIEACLNSRPLYTHENEIDQDEVLTPGHFLIGRPPLEIVEPI
FT                 ENERIGNLDRWKLIQKIKRDFWVKWKEEYLHTLQQRHKWKRDSPNIEEGQI
FT                 VLLKDENTHPARWPIGKVERIHKGKDEKVRVVEIKIKDGFVTRPITKICPL
FT                 EGIKSVDKVESDPEETKPERRTRGTSTISKLSFIMALLLCILCQFSYASAK
FT                 VDQPKYAIEKINKTSAIYLDPMGDVEIVASSWNLIIFYNMDAYFEMIKKGK
FT                 DLIPKMRVICERLLSFEDQCVLVLNNTERQISDLEENNKLFMAQGKSRNKR
FT                 APFGFMGSLYHILFGIMDEDDRIQMEDNMKNLLSNQHSLNELSRKQTSLVD
FT                 STTNILKRTTEEVNLNFKGMNKRIENMTAVLQESYYVYKESINFFMITKQL
FT                 SNIIDECEKIQSGVISLLIDINHGRLNTNILKPSQLKSEISQIKDSLSENL
FT                 VLPGKRTGTELKEVYTLLTARGLFVDKKLIINAKIPLFGRHASVLYKIIPV
FT                 PVRLDERMITVHVDSQYLVYNFEIDAYHLMTEPTINKCQRWQSNKRVCEGS
FT                 WPWSSANDNSCELKPLKPNKQSDCKYKSVIESKSYWVELERKSSWLFKVQN
FT                 HSKARIQCSNSKIEIVDLPEQGILTLRSDCTARTDDKILVAQHSIQLEDQG
FT                 TFSVSYIGEVNDVPKIVWNQLDLPLINHTDEINRLTQEIQYLKTHKLELKE
FT                 LDFHHVTGHASLILAIIIILVLTVYFIRKINVRRQLQAIAIPNGIINI"
XX
SQ   Sequence 8143 BP; 3133 A; 1230 C; 1535 G; 2244 T; 1 other;
     aaaaggttgt atttatttac tatccttaac attttggtcc tacgagcaac tctacagttt        60
     tcccccacca gtggtaagag acttagagga aagccagcac cttaattgac tcttgttttc       120
     ccctttatgg taagaaacag agtataaatt taaaagcaaa aggacaaata agagtcctta       180
     ttgtttaaag caattttcaa aaataataaa aaaataaaaa attkttgtga aattgtggtc       240
     gagaaatcga caagttaaat taaaaaaaaa tataataaat tgtctcgaac aattttattt       300
     tgaggcgttt tcgtggcctt acaacaacaa aaaaaagtga ttaattaaaa tcaggcgtat       360
     tcgaggccac acatcgaaaa agtgcaaaaa aagtatatat atatatatat atatatatat       420
     atatatattt aaactatcag tgacaaaaaa caaatattaa aaaaaaaaaa acccaatatt       480
     aactgttcaa ataaataaaa agatttaaaa aaaaaaaact taaatcatct ttaaaaacaa       540
     caacgaagac cctcaaagag acgacaactg aaggaaggcc agcaggatca acaacaggag       600
     cggcaacaga gacaaggaca acggcagcag cagcaacaac gaccatcagc aacaacagcc       660
     gcaacaacaa gcgcatcagc aacaacagca tcagctaaaa caactacaac ggcgacaacg       720
     gcagtgacga caacaaatac accagctaag ttaatcttaa aatttatttt tataagttac       780
     gagcatttta atattaagaa aagataaatc cgttcagacg ctctcgagtt ttagcaaaac       840
     taacgaacag caatttattt ttatatatat acatatacaa aactaaagcc aaaaccatgt       900
     tgtccgctga aactattgcc ttaataaaaa ggcaagtaga aattacaaaa ctaattcata       960
     cccttagaga gctacctagt ctatcattcg aatatttgaa acagtatgag gaattaaggt      1020
     ccgaatgtgt tcaaaatcat tcggttttgg ttcaaattgg agtagtcgat catgactact      1080
     tcaagaagaa ccattatgag aaaatgatga tagatctctc aaacataaaa gataggataa      1140
     atagggtttt aaacaaagct gacgaagttg acttagaggc cagtagttct aaagttgtca      1200
     ataaattaga tagggcaata gtacaggtac gggaatactt aaaagaaact tttgaagaca      1260
     ttaagctaga caatgtttca acttttgaga ttagagtcca gaaattagaa ttttattgga      1320
     caaaaatagt aggtcttaaa caagtcgacc aagtagatgt cactgatagg ggttatgacg      1380
     aggagttgaa cgagttagag ttcgacatct cgtcaataac caacacaatg aaaaaaaaat      1440
     cgaacaaatt gtgcccggaa aggttaacgt tggaaatcat aaaattgatg atttgccaac      1500
     gttacctaaa attcaggtac ccacgttcta tggagattcc aaagactggg acctgtttta      1560
     tgagttgttt aatgaactca ttcatttaag agaggatcta agtccttctt ttaagttcag      1620
     ttaccttaag atctcactta agggagaagc cagaaatgtg gtttctcact tattgttggg      1680
     atctggggag aattatgagg ccgcttggga gttattaacc aagcggtacg aaaataaaag      1740
     gaaaattttt tccgatcaat taaaccgcct tctggatctt caaatcgtaa atgttgattc      1800
     agttaggcaa ctaaaaatat ttattgacac gattaacgag tcaatacata tgataaaatt      1860
     gaaggcacaa ctttctgatg aagtggatat tatgtttgca cacataataa ttaggaagtt      1920
     taacaaagaa gctcttcaac tatatgagag ccatgttaaa aaaactaaag agattcaagc      1980
     gttatcggac gtcattgaat ttttagagca acggctaagt tcgataagct cagttcagga      2040
     tgaaaagcct gtaaaaaaaa tatatagtag caatataaga gaattagcta ctaataattg      2100
     tcccatatgt aaaatttcgg gacattttat attccagtgt cagaaattta aggttttaaa      2160
     tccatcagaa aggatggaaa aagtaaaaaa tgcccatttg tgtttcaaat gtctgaaaca      2220
     ctcatttaat aaaaaatgtc aaagcgacat ttcatgttct atttgcaaga aaaatcacca      2280
     cagcatgcta catataaatt ataacgttaa ccaaaaatta gaaaaggtta acacttgcag      2340
     gacatccgaa caggcgttgc ttgctacagc acgcgttcaa ataaaatcct cgaatggagg      2400
     gtttgaaaat ttcagagctt tgattgacag tggttctcaa agcaccataa tttctgaaga      2460
     atctgtgcag attctaaaat tacaaaaaat tcgatctcaa acagagatca gtggagtatc      2520
     ctccacagga aagtgcatct cgaagcacaa aattcatctt tcaattaaat gtaatgcttc      2580
     ccaaaaaatt ttaaaagttg aagcattagt actcccaaaa cttatgaggg ctctcccagc      2640
     ccacaaagtt aatgttgaca aaacgaaatg ggaaaaatat aatttggccg accccgactt      2700
     taataagccg gggcgtgtag atctaattat tggagcagat ctatatactg acattctaca      2760
     gagtggagtg gtcaaaataa atggcctcct cggccaaaaa accgatttcg ggtggattat      2820
     ctctggatgt aaaaaatcaa agggacagaa gacaattgta gcaaccacca tagaattaaa      2880
     agatatggat cggtattggg aagtagagga tgaagataaa aatgatatcg aatctgaaat      2940
     atgtgaaaat aatttcacaa aaactacaaa gatagattca gatgggcgat acattgtgtc      3000
     aattccattt aaagatgatg tcaccttagg ggattcaaag aaacaagcga tggctcgttt      3060
     catgaatctg gagaaaaaat taaaaagaaa cgagaaacta agggcagact acactaattt      3120
     cattaatgaa tatatgaatt taggacatat ggtcgaagtg cagaatgaag gtaagtattt      3180
     cttaccgcac caagccgtga tcagagattc gagcttgacg accaaattaa gagtagtttt      3240
     tgacgcttca gcaaaaacta ctaataacaa aagtttgaac gatataatgt gggttggtcc      3300
     acgagttcaa aaggatattt ttgacattat cgttaaatgg agaaaatggg aatatgtggt      3360
     atccgcggat gttgaaaaaa tgtatcgtca aataaagatt gatgatgagg atcagcaata      3420
     ccagtacatt ttatggagaa actctccaga tgaaaaaata aaaaattata aattgacaac      3480
     agtcacatat ggtactgcat ccgcaccata tttagctacc agagttctgg tagatattgc      3540
     tgataaatgt aaaaataaat atttgagtga aataattagg aatgatttct atatggatga      3600
     cctaatgact ggggctgatt ctgtggaaga tgccaacaat ttaattaaac taatctccaa      3660
     ggaactacaa aaggtagggt ttaatttaag gaaatgggtt tccaacaatt ttaaagtaac      3720
     tcaaactgtt gagaacacag gagataacaa agtgcttgct attacggaaa atgaaagcgt      3780
     taaaactctt gggcttcaat gggaacccca aaaagattta tttaaattta aagtaaattg      3840
     cggggaatcc aaaaagacta acaaaagggt agtgttatcg acattatcaa aaatttatga      3900
     tcccctagga tggctggctc ctgtcactgt tttaggaaag ctttttattc aaaaattatg      3960
     gataaataaa agtgagtggg atcaggagtt atccaaggaa gacaaagatt attgggaaaa      4020
     ttataaagaa agtttgttat ctttagaaaa gattcgaatc ccaagatgga ttagttccaa      4080
     gaattgtttg gggatacaac ttcatggatt tgcggacgct tccgaaaagg catatgcagc      4140
     cgtagtatat gctaaggtag gaaattctgt gaatataata gccagcaaaa gtaaggtcaa      4200
     tccaattaaa aatagaaaaa ctattcccaa actagagtta tgtgcagctc atttacttag      4260
     tggattgatc aaaagaatta atgaatccat tgataataca gtggaaatct acgcttggag      4320
     tgattccact atcactttag catggataaa caatggagat agcaaggtca agtttattag      4380
     acgaagaaca gatgacattc gtaaactaaa gaataccgaa tggaatcatg tgaagtctga      4440
     agaaaatcct gcagatttag catcaagggg aattagttct agccaattgg ttaactgtga      4500
     tctttggtgg aaaggtccga agtggttatc tgagccaaag gagcaatggc ctcaccagga      4560
     atccacagga gaaattgtct tgataaattc aattttaaac aataaaaccg ataatcctat      4620
     ttataattta ctggagaggt tttccagtat tgaaaagatt atacgagtaa tagtatacat      4680
     aaatagattc attcaaatca agataaaaaa ggaatcctat ccttccttcc tatctgtaaa      4740
     agagttaaaa ctagctgaaa agattgttat aagaaagcaa caagaatatc aattcagcca      4800
     agaaataaag tgcctaaaaa caaataagga aattaagaca aataatagga tattgtcgtt      4860
     aaatccgttt ttagataatg atggtattct gcgagtggga ggaagactag aaaactccgg      4920
     tgcagaattt aaagttaagc acccaataat cttggacaaa tgccatttaa ctaacttgtt      4980
     gataaaaaat gctcataatg aaactttgca tggaggaata aacctaatgc gaaattatat      5040
     ccaaagaaag tattggattt ttgggttaaa aaattcatta aaaaagtatt taaaagaatg      5100
     tgtcaagtgt gcgagataca aacaaaatac agctcaacaa ataatgggca acctgcctag      5160
     atacagagtt acgatgtcgt acccattttt taatactgga atagattacg caggtcctta      5220
     tttcgttaaa tgttccaaga atcgtggact aaagacgtat aagggataca ttgccgtatt      5280
     tgtttgtatg gccaccaaag ccatacatct agaaatggta agtgatttaa cctcggaagc      5340
     atttctagca gcactcagaa gatttattgc tagaagaggt aaatgtgcta atatttattc      5400
     ggataacgga actaatttcg taggagcctc aagaaaatta gatcaagatt tagttaaagc      5460
     aatcaaggaa aatacaatga ttgccgcgca gctcgaaaaa gatagaattg attggcattt      5520
     tatccccccg gcaggacctc acttcggagg tatttgggaa gctggagtta aatccatgaa      5580
     ataccatctg aaacgggtaa tcggggaaaa tagtctgaca tacgaagaaa tgtcaacact      5640
     tttatgtcag atagaagcat gcttaaattc aagaccattg tatacccatg aaaatgaaat      5700
     tgatcaagat gaagtcctaa caccaggaca tttcttgatt ggtagaccac cgctagaaat      5760
     agttgaacca attgaaaatg agagaattgg gaatttagac aggtggaaac taatccagaa      5820
     aattaaaaga gatttctggg ttaagtggaa agaggagtat ttacatactc tgcaacagag      5880
     gcacaagtgg aagagagaca gtcctaatat agaagaggga caaattgtgt tattaaaaga      5940
     tgagaatact catccagcca gatggccaat aggcaaagta gaaaggatcc acaagggcaa      6000
     agatgaaaag gtcagagtgg tagaaataaa aataaaagat ggatttgtaa ctagaccaat      6060
     cactaaaatt tgtcctttag aaggaattaa gtctgtggac aaagttgaat ctgaccctga      6120
     agaaacaaaa cctgaaagac gaacaagagg tacatcgaca atatcgaaac tttcttttat      6180
     aatggctttg ttattatgta tattgtgtca attctcttac gcttcagcta aagttgatca      6240
     gccaaaatat gcaattgaga aaataaacaa aacttcggct atatatctag atccaatggg      6300
     tgacgtagag attgtagcct cctcttggaa tttaattata ttttataata tggacgctta      6360
     tttcgagatg attaaaaaag gtaaagattt aatcccaaaa atgagagtaa tttgcgaaag      6420
     gcttcttagt tttgaggatc agtgtgtttt agttctcaat aacacagaaa ggcagatctc      6480
     agacttagaa gaaaataata aactttttat ggctcagggg aaatcaagaa ataaacgagc      6540
     tccgtttgga tttatgggat cgctttatca cattttattt gggataatgg atgaagacga      6600
     caggatacaa atggaggaca atatgaaaaa cttattaagc aatcaacata gtcttaatga      6660
     gttaagtagg aaacaaactt ccttagttga ttctacgact aatattttga aaagaacgac      6720
     tgaagaagtt aatttaaact ttaaaggaat gaataaaaga attgagaaca tgacggcggt      6780
     attgcaggaa tcttattatg tgtacaagga gtccatcaac ttcttcatga taacaaaaca      6840
     attaagtaac attatagatg aatgcgaaaa gattcaatcc ggagtcataa gcctgttaat      6900
     tgacatcaat catggtcgac ttaataccaa tatattgaaa cctagtcagt tgaaaagtga      6960
     gatttcccaa ataaaagaca gtttgtcaga gaatttagtt ctgccaggaa aaagaacagg      7020
     tacagaatta aaagaggttt atactttact cacggctagg gggttatttg tagataaaaa      7080
     gttaattatc aatgcaaaaa tacctttgtt tggaagacat gcttcggtgc tttataaaat      7140
     tatcccagta ccagttaggc tagatgaacg tatgattaca gtacatgtcg attctcagta      7200
     cttagtttac aattttgaaa tagatgctta tcacctcatg acagaaccaa ccattaataa      7260
     gtgtcaaaga tggcaatcta ataaaagggt ttgtgaagga agttggcctt ggagtagtgc      7320
     taacgataat agttgtgagc ttaagcctct caaaccaaat aagcaatcag attgcaaata      7380
     taaatcagtg attgagagta aatcatattg ggtcgagtta gaaaggaaga gcagttggct      7440
     ttttaaggtt cagaaccatt ctaaggctag aattcagtgc agcaactcga aaatagaaat      7500
     agtggattta cctgagcaag gaatattaac gctaaggtca gattgtactg ctcgaactga      7560
     tgacaaaata ttagttgccc aacacagtat tcagctagaa gatcagggaa cattttctgt      7620
     gtcttatatt ggagaggtta atgatgtacc gaagatagtt tggaaccagc tcgatttgcc      7680
     cttaataaat catactgatg aaatcaatcg attaacacaa gaaatacaat atttaaagac      7740
     tcacaagtta gaattaaagg aattagactt ccatcatgta actggacatg cttctttaat      7800
     tttggcaatt attataatac ttgtattaac tgtatatttt ataagaaaaa taaatgtacg      7860
     aaggcaatta caagccattg ccataccaaa cggtataatt aatatttaat caatttatgt      7920
     tataaataaa ttatgttaaa gaatgttttg attaaaaata aataaattaa agattcaaat      7980
     tttgtaatcc taaaacataa gtcatttcaa gccgtgcaag gtgttaaatt tataatgcaa      8040
     aataaaatat atcgaataaa tacagtccac taattttata ttgcaattga atcaattatg      8100
     taattacaac acatacacca cagtttgccg gcccttgcca gaa                        8143
//
ID   BEL-5_DEl-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DEl-LTR;
KW   BEL-5_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-364
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7090-7090 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 364 BP; 121 A; 72 C; 68 G; 103 T; 0 other;
     tgttcagacg aacactgata aatattatgt ctaagattta atgagctctg cacatgtcat        60
     gtagaactgt gtaattcgat caagagccat aatttacgat ctgggacccg acaagggttc       120
     agtttttcaa atgcacttgt aatctgtaac agcaggccac ttgagctatc taatattatc       180
     gctcccagat gtgccttcac cgagagttct tgtgcggggg gcaaaataaa taactccccc       240
     gcccagacta aaaagattag gtctctgcgt agaccatagc taagattaga ataagatttt       300
     cacataagtt tcttgtcaag aagttttaaa taaaatgaaa cagtttcaat acagaactca       360
     aaca                                                                    364
//
ID   BEL-5_DEu-I repbase;    DNA;    INV; 5000 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.06, Created)
DT   29-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DEu_;
KW   BEL-5_DEu-LTR; BEL-5_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5000
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 855-855 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3979-4569] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1207..4998
FT                 /product="BEL-5_DEu-I_1p"
FT                 /translation="MEQLRFRFGRPEQLIRSQLNSVREVPPITEQNLARIV
FT                 PFATRVSNLTAFLQSAKAEQHLGNPTLMEELVAKLPTSKRVDWARHAASIE
FT                 PFPTVAHFSVWLQEYANIVCTILDVEGKEPRRRVLHASVDQDGYEQRDDRH
FT                 GGCPICGGQHATTSCREFIGASPPGRWSMVKRHRLCFTCLRSGHTTRSCDV
FT                 HGECQINGCRRLHHRLLHGEDEGRRRPEQRGGFRRHNGGNQMSAVSRRSPE
FT                 GGLRHEVVAGTTRGASSRLFSETTWREGPPSQRRRLGRGPQHYKPLPAVLF
FT                 HFREGAVGVCGDIKEMFHQVLIRPEDRCSQRFLWRDGNDDREPDIYEMNVM
FT                 TFGAACSPSTAHYVKTVNALKFRDSDPRAVKAIIDHHYVDDYVDSFDTESE
FT                 AIEVSTRVKEIHAEAGFELCQFSSSSPIVEAALGPPGQVKSVGWGESEQKI
FT                 LGMRWQVATDDFRFNVEYHRVPKSVLSGERVPTKREFLSLLMSTFDPLGFL
FT                 CCLMITAKLLLREIWRQKIQWDEPLPEEIGRAFAAWRREMDAVGQFRCPRH
FT                 YFGRGAVWTIELHVFVDASQSAFAAVAYWRVTYKNGNVLVSFVCAKTKCAP
FT                 MRTMSIPRLELQAAVLGTRVMNTVKEEHSVDISETVLWTDSKTVLKWIGST
FT                 HRRYKQFVGNRVAEILESSKVSQWRWVPTADNAADDATRSQSKADLSPESR
FT                 WLSGPAFLRQPASGWPTPEEGTEHVPDAPDEEEMPGEFALVASNEFVILFQ
FT                 RFSSFSRLVRTTAWVLRFARRCRKQRSELEEYGLTATECEAAENLLIRQAQ
FT                 LESFPDEMRSAERGKDVANSSEIRSLAPYVDKYGVLRVYGRVDAALSMPYS
FT                 ARRPVILSHRHSLTEMVVRHYHAQMKHQNVDATIAQIRTRFWVTKIRRVLK
FT                 EVISSCNECKLQRTRPMPPIMGPLPEDRLEAGGWPFKYTGLDYFGPLLVTV
FT                 ARHREKRWVALFTCLTTRAIHLELAHDLSTDSCIIAIRNFVCRRGPVRKLR
FT                 SDNGKNFVGADREARRFGDVFETERIQSELSSRSIEWVFNCPSNPSEGGVW
FT                 ERMVQCVKRVLRHTLKEVAPRDHVLESLLIEAENIVNSRPLTHLPLDADQE
FT                 APLTPNDLLKGAANLPDTPGWDVERPKEGSTRKQWRIARMLRDRFWRRWVM
FT                 EYLPTLVRREKWCRRTEPIRQGDMVFVCDPALPRREWRKGIVEEVYSGADG
FT                 VVRRATVRVNDNGLSWTMFATVRVNDNGLSWTMSRPVSKLAVLDLSEAGLH
FT                 GVG"
XX
SQ   Sequence 5000 BP; 1203 A; 1274 C; 1613 G; 910 T; 0 other;
     tcttttattc gcagtcctag ggagactgca agggcaactt gcgctggagg acggcttgac        60
     gaccagctag agagttgcca ggagcgcacg gagcgcattt cccgtaccag cagaggagtc       120
     gcagccagcg acatagacgg cgcaaggagc gccaaacact gagtacggac ggagtcgcag       180
     ccagcgacac ggagacgcag ccggcgtcag ttcaggagac gcagccagcg tcaggttagg       240
     aagcgcaagg agcgccaagc accagcggtc aggaggcgca aggagcgccg agcatcagcg       300
     gcagcagcca gacggcacag gtccgccatt ttggagcgct agggcagcgc catatttgga       360
     ccatatttat ttggagatgc agcattcccc caggaggagt tcccggctga acggagggga       420
     agccacccct acaacaacgc agcagccagc gagtagtgca gcagaaaacc ggccaggggt       480
     taacataacc acggcggcgg ccatttctcg cccagccact acagcgacta cagtagcgtc       540
     ccaaccaagg agtactgtaa cagcagctgc gagctcagag ccggaggtgg gccagccacc       600
     cacggcgtac cttttggata ggatcacggc gttggagaat gagctgaagc aggttagagc       660
     catgaacaca acgagcaccg ccaattgcgc gccaatcgca gttggcccaa gcgcaaatgg       720
     cgccaacagt ggagcgtcgg agcggccgcc atcgtggagc ggaccgccat tagccgccac       780
     attaaccgcc acatcgaacg gtgaggccca aactaacggg gtcgggccgg tcccaaatag       840
     cggtttcggt gcgaccagtg ggacctacac gctgccgcca tcttggagtg gaccaccgtt       900
     actaacgact agcaacccac tgtgtgctac aagtgctgcg cagacagcgc atggattcgt       960
     gctaccgggc gggagcatcc gattggaacc caaggagcga atgggccaag gaggctcccg      1020
     gacttgccta tatttggagg gcagcccgag gattggccca tctttaattg tgcatttgtg      1080
     gagacgaccc aagcgtacaa ctgcacggac ctggagaaca accagaggct gttgaaggcg      1140
     ctgaaagatg aagcacgcga gacagtgaag tcgctgctga ttcaccctgc gaacgtcaga      1200
     gccgtgatgg agcagttgcg ctttaggttt ggccgaccgg agcagcttat acgcagccag      1260
     ctgaacagcg tgcgagaggt gccgccgatt acggagcaga acctggcgag gatcgttccc      1320
     ttcgcaacta gagtgagtaa cctcacggcc ttcttgcagt cggcgaaggc ggagcaacat      1380
     ctgggaaacc ccaccctcat ggaggagctt gtggcaaagc ttcccaccag caaacgagtg      1440
     gattgggcca ggcacgccgc atcgatcgag ccctttccca ctgtagcgca cttcagcgtg      1500
     tggctacagg agtacgcaaa catcgtgtgt acgattttgg acgtcgaggg aaaggagccg      1560
     aggcgtcgag ttctacacgc gagcgtcgac caggacggat acgagcagcg ggatgaccgg      1620
     catggaggtt gtccaatttg tggagggcaa catgctacga cgagctgcag ggagttcatc      1680
     ggagcttcgc caccgggcag gtggagcatg gtgaagaggc atcggctctg cttcacatgc      1740
     ttacggagtg ggcatacgac cagatcctgc gatgtgcatg gcgagtgcca gattaacgga      1800
     tgccgcagat tgcatcaccg tctgctacat ggagaggacg aagggcgaag aaggccggaa      1860
     cagcgaggtg gcttcaggcg ccacaacgga ggaaaccaga tgtcagctgt ttccagacgc      1920
     agcccggaag gaggtcttcg ccacgaggtg gttgcaggga ccacgagagg agccagcagc      1980
     cggctgttct cagagacaac ctggagagaa gggcccccaa gccagcggag gcgcctgggc      2040
     agggggccgc agcactacaa gcccttgcca gctgtgctct tccacttcag agaaggagca      2100
     gtcggagtct gcggggacat caaggagatg ttccaccaag tgctgatccg acccgaggat      2160
     cgatgttccc aacggttcct ctggagagat ggcaacgacg atcgagagcc ggatatatac      2220
     gaaatgaacg taatgacgtt tggagcagcc tgctcgccga gcactgcgca ctacgtcaag      2280
     acggtgaatg ccctgaagtt tcgggattca gatccgaggg cagtcaaggc catcatcgac      2340
     caccattacg tcgatgacta cgtggatagt ttcgatacgg agagcgaagc tattgaggta      2400
     tctacccgag tgaaggagat acacgcggag gctggattcg agctatgcca gttctcatcc      2460
     agctcaccca tcgtggaagc ggcgttggga ccacctggac aagtcaagag cgtcggatgg      2520
     ggtgagtctg agcagaaaat ccttggaatg cgttggcagg tagcaacgga tgacttcaga      2580
     ttcaacgtgg agtatcatcg agtgccaaaa agcgtcctaa gtggagagcg agtcccaaca      2640
     aagagggagt ttttgagcct gctgatgtca acgttcgacc cattggggtt cctgtgctgc      2700
     ctgatgatta cagcgaagct gttgctgcgg gagatctgga ggcagaagat ccagtgggac      2760
     gaaccgctgc cggaggagat aggcagagcc tttgctgcct ggcgcagaga gatggacgcc      2820
     gtgggacagt tccgatgtcc tcgccactat tttgggcgtg gagcagtttg gaccatcgag      2880
     ctacacgttt tcgtggacgc aagtcaatct gcattcgcgg cggtggccta ttggagggtc      2940
     acgtacaaga atggcaacgt gctggttagc ttcgtgtgcg caaagacgaa gtgtgcgccg      3000
     atgagaacga tgtccatccc acggctggag ctgcaggcag cggtccttgg aaccagagtg      3060
     atgaacactg tcaaggaaga acacagtgtg gacatcagcg agacggtttt atggacggat      3120
     tcaaaaacgg tgctgaaatg gatcggcagc acccaccgcc ggtataagca gtttgttggc      3180
     aaccgagtgg cggagatttt ggagtcgtcg aaggtttccc agtggagatg ggtacctaca      3240
     gctgacaacg cagcggatga tgcgacgcgg tcgcagagca aggcggacct tagcccggaa      3300
     tcccggtggc taagcggtcc cgcatttttg aggcagccag caagcggctg gccaacgcct      3360
     gaggagggaa ccgagcatgt tccagatgca cctgatgaag aggagatgcc cggtgagttc      3420
     gcattggtag catcaaatga atttgtcatc ctgttccaga gattctcgag cttcagtcgc      3480
     ctggtgagga ccaccgcctg ggtcctgagg tttgcgcgac ggtgccgcaa acagagaagc      3540
     gagctcgagg aatatggact cactgcaacg gagtgtgagg ccgcggagaa cctgttaatc      3600
     aggcaggccc aattggagtc gtttcccgac gagatgaggt cggcggaacg cggaaaggac      3660
     gtcgccaact cgagcgagat tcgaagtctg gcgccttacg tggacaaata tggagttctg      3720
     cgagtttatg gcagagtcga tgccgcgctg tccatgccgt acagtgcgag gaggcctgtg      3780
     atactgtcac acaggcacag tcttacggag atggtagtaa gacactacca cgcccagatg      3840
     aagcatcaaa acgtggatgc gacgattgcc cagatccgga cgagattctg ggtcacgaag      3900
     ataagacgag tgctgaagga ggtaatctcg tcgtgcaacg aatgcaagct acaacggacg      3960
     cggccgatgc cgccgataat gggacccctt ccagaggatc gcttggaagc tggaggatgg      4020
     ccattcaagt acacaggact agactacttt gggccactgc tggtgactgt tgctcgtcac      4080
     agagagaagc gttgggtcgc cttgttcaca tgcttgacga caagggcgat tcatctggag      4140
     ctggcgcatg acctgtcaac ggattcctgt ataatagcga tcaggaactt cgtctgccgt      4200
     agaggaccag tacgtaaact gcggagtgac aacggcaaga acttcgtggg agctgacagg      4260
     gaggccaggc gatttggaga cgtgttcgag acggaaagga tacagagtga gttatccagc      4320
     aggagcattg aatgggtctt taattgccca tccaacccgt ctgagggcgg agtatgggag      4380
     cggatggtgc agtgcgtcaa gcgagtgctg cgccataccc tgaaggaagt cgcgccgagg      4440
     gaccatgttt tggagagtct cctaatagag gcggaaaaca tagtcaattc gcgtccgctc      4500
     acccacttgc cactggatgc ggaccaagag gcgccgttga cgccaaacga cctgctcaag      4560
     ggagcagcta acctgccgga tacgcccgga tgggatgtgg agcggcccaa ggagggttct      4620
     acgcgaaagc agtggaggat tgcccgcatg ctgcgggacc gcttctggag gaggtgggtc      4680
     atggagtacc tgcctacgct tgtgcgccgc gagaagtggt gccggagaac ggagcccatc      4740
     cgccagggcg atatggtctt cgtctgcgat cctgccttgc ccagacgaga gtggcgcaag      4800
     ggcatcgtgg aggaggtata cagcggagct gatggagtcg tcagacgcgc cactgtgcgc      4860
     gtaaatgata atggactatc ttggacaatg ttcgccactg tgcgcgtaaa tgataatgga      4920
     ctatcttgga caatgtcgcg gcccgtctct aaacttgcag ttttagattt gagtgaagcg      4980
     ggtcttcacg gggtcgggga                                                  5000
//
ID   BEL-5_DEu-LTR repbase;    DNA;    INV; 336 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.06, Created)
DT   29-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DEu_;
KW   BEL-5_DEu-I; BEL-5_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-336
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 856-856 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 336 BP; 97 A; 61 C; 76 G; 102 T; 0 other;
     tgtcgacggt caaaacattg ttatcgatag ttaagtcagt attaatagga aatttagtat        60
     tttttaagtt atccgatttt tggcccattg aagtacgggc ttattaatcg cggttatgtg       120
     aatgccgccg aaaagtgcct tttcactgtc ttgtgaatag taggagggca cactgcggta       180
     agaagaagag ctatatttga attgtaaact aatttaatga atttacagaa taaaacgttc       240
     cgtacgccat agccataggc ctttgaagtt cacctttctt tggacctacg cgtgggggga       300
     gccgtttaag gcaactccgc acttcacaag acgaca                                 336
//
ID   BEL-5_DFi-I repbase;    DNA;    INV; 3909 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DFi_;
KW   BEL-5_DFi-LTR; BEL-5_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3909
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 885-885 (2012).
XX
DR   [1] (Consensus)
XX
CC   'ACTT' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           723..2945
FT                 /product="BEL-5_DFi-I_1p"
FT                 /translation="MLSAQIIALIKRQVEITTASRELQELPFLSAELIKKF
FT                 DTLKDECIRNHRALLKIGVVDHDYFRNYYYEEMMLCFGKIKARINQTYKSA
FT                 ELSDSQSSHERATLDKSKLDRAINQLEAYLKETFDDIRENKITTFQIRIEK
FT                 IKFYWDRIVSLKQVEMTDVTDRRYDEILDELEFDMITVSNNMQRKLIDNVP
FT                 TKVEVTSQKFDELPTLPKIQVPTFFGDSKDWDLFYELFNELIHLREDLSPT
FT                 LKFNYLKISLKGEARNVVSHLLLGSGDNYEAAWELLTKRYENKRKIFSEQM
FT                 NRLLELNNLNIDSMKNLRMFIDTINESIHIVKLKAQVSDDVDIIFAHIIIR
FT                 KFNKEALQLYESHIKKTKEIQVLSDVMEFLEQRLSSISSIQDEKPGKINIF
FT                 SNISKELFTKRCPICKGVGHTIFYCKKFKALNPLERMEKVKKAALCFKCLK
FT                 HPFNNKKCLSEILCSLCNKNHHSMLHRSYKKNPEKVNTCMTSEQALLATAR
FT                 IKVKSSNGEFKTFRALIDSGSQSTIISEESAQILKLPKFKSQTEISGVSST
FT                 GKCISKHKVNLLLKGNNSPKILKVEAKVLPKLIKALPVSKVNIDKAKWKSY
FT                 NLADPDFNKPGRIDLIIGADLYTHIIQNRVVKINGLLGQKTDFGWIVSGRK
FT                 KSKKEITIGATTIKLKNMDRRFLSPRQDLTSEVLKSPNLKEGQIVLLKDEN
FT                 SHPARWPMGKVEKVHVGKDEKVRVVDLKVQDGYSTRPITKI"
XX
SQ   Sequence 3909 BP; 1472 A; 632 C; 724 G; 1081 T; 0 other;
     ttttggtcca tcgaggcacc ctgcagtttt cccccaccag tggtaagaga ctcaggagta        60
     agaccagcac cttaaagaaa aatctttctt aaggttgcaa aaataagtaa ctctagtatt       120
     cccccaccag tggtaagaat caagagtata aaataaaaag caaaaggata ctaaagagtc       180
     cttattgttt aaaacaaaaa tttaaagaat ttttgtggtc gagaaatcgg caaaaataaa       240
     ttaaatacag ttaaattgcc atcaggcaac tgtatttggg cgttttcgag gccctaagta       300
     taaacatcga aagtgttttt aagaattttt gtggtcgaga aatcggcaaa aataatttaa       360
     atacagttga aattgccatc aggcaactgt atttgggcgt tttcgaggcc ctaggaaaaa       420
     acatcgaaag tgctcaaagt taaaatcagt gacattggtg aatataacag tagaaaatct       480
     ctaatcagtg acatcagtga attctctgtg actacagttc tgtgacaaca gtgatttcaa       540
     aatacatagt ctcatctgtg agcggcacca ttggcatcag caacaacaat cagcagcggc       600
     ggcattaacg gcaaaattat cggcatcagc atattcagcg gcatagacca gataagtcaa       660
     ttttaagttg taaactaaac ttaagaacga cctatctgtt tttttttcgg aaagagataa       720
     tcatgttgtc tgctcaaatt attgcgctta ttaagaggca agtggaaatc actaccgcca       780
     gtagggaatt acaagaactc ccattcttgt cagccgaatt aattaaaaag tttgatacac       840
     ttaaagacga gtgtatcaga aatcaccgag ccctgttaaa aattggagta gtcgatcatg       900
     actactttag aaattattat tacgaagaga tgatgctgtg ctttgggaaa attaaagcac       960
     gcattaacca aacctataag tctgctgaac tgtccgatag ccaaagttcg cacgaaaggg      1020
     ccacgctaga taaaagcaag ctagatagag caatcaatca gctagaagct taccttaaag      1080
     aaacctttga cgatattagg gaaaataaga ttacaacctt ccaaataagg attgagaaaa      1140
     taaaatttta ttgggacagg atagtaagtt taaagcaagt cgaaatgact gatgtcacag      1200
     ataggagata tgatgagatt ctagatgagc tagaatttga tatgatcact gtgtcaaata      1260
     atatgcaaag aaaattgata gacaatgtgc caactaaggt tgaggtaaca agtcaaaaat      1320
     ttgacgaatt gccaactctt cctaaaattc aggtgcccac attctttgga gattccaaag      1380
     attgggacct attttatgag ttatttaatg aactcattca tttaagggag gacctaagtc      1440
     ctaccctaaa attcaattat ctaaagattt cccttaaggg agaagctaga aatgtagttt      1500
     ctcacctgtt attggggtct ggagataatt acgaggccgc ttgggaacta ttaaccaagc      1560
     ggtacgaaaa taagcggaag atattctccg aacaaatgaa tcgtcttctt gagctcaata      1620
     acttaaacat tgactcaatg aagaacttac gtatgtttat tgacactatt aatgagtcaa      1680
     ttcatatagt aaaactcaag gcacaagttt ctgatgatgt ggatatcatt tttgcccaca      1740
     ttatcataag aaaatttaac aaagaggctc ttcaattgta cgaaagccat atcaaaaaaa      1800
     ctaaagagat ccaagtattg tctgacgtta tggaattttt agagcaacga cttagttcaa      1860
     taagctcaat tcaggatgaa aagcctggta aaataaatat atttagtaac atttccaagg      1920
     aattgttcac aaaaagatgt cccatttgca aaggtgtggg gcacacaata ttttattgta      1980
     aaaaatttaa agctttaaat ccattagaaa gaatggaaaa ggttaaaaaa gctgctttat      2040
     gttttaaatg tttgaaacac ccttttaata ataaaaaatg tcttagcgaa attttatgtt      2100
     cgctatgtaa caaaaatcat catagtatgc ttcacaggag ttataaaaag aacccagaaa      2160
     aagtaaatac atgcatgacg tcagagcagg cattattagc tactgcacgt attaaagtaa      2220
     aatcctcaaa tggagaattt aaaactttta gagctttgat tgacagtggg tcacaaagca      2280
     cgataatttc tgaggaatca gcgcagattc tgaaattacc caaatttaaa tctcaaacag      2340
     agattagtgg agtatcttcc acaggaaagt gcatctcgaa gcacaaagta aatcttttgt      2400
     taaaaggtaa taactcgcct aaaattttaa aagtagaagc aaaagtactt cccaaattga      2460
     taaaagctct accagtcagc aaagttaata ttgacaaggc caagtggaag agctataatt      2520
     tagcggaccc tgactttaat aagccgggcc gtattgattt aataattgga gccgatttat      2580
     acactcatat tatacaaaat agagtggtta aaataaacgg tctattaggg caaaaaaccg      2640
     atttcgggtg gattgtctct ggacgcaaaa aatccaaaaa agaaataaca ataggggcaa      2700
     ccactattaa actaaaaaat atggatcgcc gttttttatc cccccggcag gacctcactt      2760
     cggaggtatt aaaaagtcca aatttaaaag aaggacaaat tgtcctatta aaagacgaaa      2820
     atagccatcc agctaggtgg ccaatgggga aagttgaaaa agtccatgtt gggaaagatg      2880
     aaaaagtcag agtggtagat cttaaagtac aagatggata tagcactaga cctatcacga      2940
     aaatttaaaa ggaataaagt cttatgaaaa gaaagacgct gttttcagaa acaagaagaa      3000
     aagctatagg gacatcgaag atgtcaagac tccagtctat tgttaatatt ctaacgcatc      3060
     ctccattaat acaaagtcaa aaaataatat atagtataaa tagtacttca gcaatttatt      3120
     ttgacccaat gggcgatgtg gagattgtat attcttcttg gaatttagtg atttacaata      3180
     ataatgatgc ctattttgag atgttgagta aagacaaaaa accattacca aaaaattaga      3240
     gtgagtttcg aaaaacttta tagttttgaa gatcagtgtc tttaagttga ggataatact      3300
     cctttctgcg agcactttta agttttatag gatcactata tcacatactg tttgggataa      3360
     tggatgaaga agatacagta caaatggaaa ttaacatgag acatttaagg ttcagcgtgg      3420
     caccaaggct cgggttcaat gcattaattc caaactcgaa attattgatt taccagaaca      3480
     aggagtttta acaattagag cagattgcac tgctcgaaca gataacgaca tttagttgct      3540
     catcataata ttcagctaga aaatgaacag acaatatcat tatatcatgt aagtgaaatc      3600
     aaagaaattc ctaaggtaat ttggagtcca ataggtacac caacaattaa tcataccgaa      3660
     gaaattaata aattgtcaaa caataatatt agctgtatat tttataagaa aaataaaaat      3720
     acaaaggcaa ctgcaagcca tagctatacc aagtagcata cttagtgttt ggccattaaa      3780
     taaggtcata gcaagttgtg tagttgctac aaaataatat cgaataaaga aatacagtcc      3840
     acttactttt atattgcaac aaggagcaaa taaattatat gcgcacaatc ttgccggccc      3900
     ttggcagaa                                                              3909
//
ID   BEL-5_DFi-LTR repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DFi_;
KW   BEL-5_DFi-I; BEL-5_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-332
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 886-886 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 332 BP; 113 A; 75 C; 61 G; 83 T; 0 other;
     tgttcagacg aacactataa agacctaggc gcatgtgcac caggcctaag ccataaataa        60
     cttaccataa gtgagtgctg cgacactcat aggttttaag tacaggctat tttaatctaa       120
     aaatatacca accacttaag agattggtac acaccaaaag gttgctgtgc gggggtcaaa       180
     gataaccctc ccgctttgct agcaaacgcg gcctctgcgt aggccataga attcatagaa       240
     agatttccta tataagtcaa gcccaaacta aataaaaaca gtttcctaca aaaactcaac       300
     cgtgtaagtg ttcttatttc gaggcattta ca                                     332
//
ID   BEL-5_DMel-I repbase;    DNA;    INV; 7897 BP.
XX
AC   .
XX
DT   04-AUG-2018 (Rel. 24.06, Created)
DT   04-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7897
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1058-1058 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other. Similar to BATUMI_I, but more
CC   complete.
XX
FH   Key           Location/Qualifiers
FT   CDS           1444..6813
FT                 /product="BEL-5_DMel-I_1p"
FT                 /translation="MPIGDDKKKLSADKPRSIFSPQGPKSPRIPSISVRTP
FT                 AQISDDCATPSKATVQRTAKNMAASDLALAKFISVSDRLSEFEAQINTPES
FT                 AAPTVTMLGVRRDQVRTLWDKVEKEYDLCSECLVSAGEAAASNMPILRAKY
FT                 SYCYSVYERCVAQLVDKIEQGTSQSIPTANAAPQAYISSGCRLPPCDTEVF
FT                 AGDYLRWPTFRDLFTAIYINNPRLTPVEKLFHLNAKTSGDAHAIVSISPLT
FT                 NEGFRSAWENLIERFENKRLLVNSQLKILFNVQSIPQESGAALKVLQSTVQ
FT                 GCLTALELSGINTENWDCLLVYLCSSKLPKITLSLWEQSLHKKADIPTWGE
FT                 LNTFLTERHRTLEAIDDVRPSVPSQSHSKVINSSGPSRKLNSYEAKVAPKL
FT                 KSCDLCNKEKHPVRVCPRFLQMSVDDRSAYIKRKQLCLNCFATGHQLRECK
FT                 STHNCFTCRGRHHTLLHRNNLCSSNSSPSNPARPISANQANFVPNEQAGVQ
FT                 NYFATGSRAILLGTAIINISHLGTNFKARALIDSGSEATFITERLFNLIRL
FT                 PFQVVQAQVSGLNQTVAAQSKKLCSFTIRSPTRPALQLETTAYVLPQLAGN
FT                 LPSYPIPQNFLRDLPDFPLADPKFYESAQIDVLIGADILPSVLLSGAKTNI
FT                 CGSLLGQETIFGWVLTGPVSASAQSRISSFSTQISQAHDNSLDKLLTKFWE
FT                 VEDIPTKLVKESDSMCEKNFLQTTTRSECGKYVVTLPFRDPEHIGSGLGHS
FT                 RSFALAQFLRNEQRLKRDEALKARYDSVIQEYLDLKHMRQVLPTHDCNAYY
FT                 MPHHAVLKPESVTTKLRVVFNASSPSSNGTSLNDILHAGPVLQSDLTIQIL
FT                 KWRYFRYVFNADIEKMYRQIWVDPRHTPFQRILFRNNRGEIRDFELKTVTF
FT                 GVNCAPFLAIRVLQQLAADVELSHPKASNVIRNFMYVDDVLAGADSTEEAQ
FT                 LMVQELRDALNSAGFPLRKWTSNQKEVLAAIQSNHLLNTDFLEIDAESTAK
FT                 TLGIRWKATSDEFFFVPPELAIETSFTKRQVLSQIAKLFDPAGWLAPFIVR
FT                 AKIFMQEIWLQELGWDENIPNELFQRWLNFLQSYSVLEQIRIPRWLSFRPD
FT                 FKVEHHGFCDASQKAYGAAIYVRVEVGSTIMVQLLTAKTRVAPVKTVSLPR
FT                 LELCGALLLSEMAAAIIPQMPTTNSELYCWTDSTIVLAWLSKPACQWTTFV
FT                 ANRVTKIAQATKTENWSHVQSEHNPADLASRGVSLQDLADSQLWWHGPTWL
FT                 QNPRNQWPTQVNAPVTDLEKRALKVHLAKAPSEELLARFSKLEKALRVLAY
FT                 VYRFIQRCRKQTSPADVHLLATEIAAAERFLISNTQRREFPVEYHCLSEKR
FT                 PVPSSSAILSMNPFLDPQGLIRACGRVAASESLQYNERHPVILPYNCLLSR
FT                 LLANFTHRITLHGGNQLMVRLIRSKYWIPRIKNLMKAVVNSCKVCVIHKKR
FT                 LQSQLMGVLPKERASFSRPFTYTGMDYAGPFDIKNYTGRACLITKGYVLVF
FT                 VCFSTKAIHLEPTSDLTTEKFLAAFSRFVSRRGCPRQVQSDNGKTFVGAAT
FT                 LLSRDFLQAVKESVTNAYIHQEMQWQFIPPGAPHMGGLWEAGVKSFKTLFY
FT                 KCTATRKYTFEELSTLLAKIEACLNSRPLSPMSEDPTDLLALTPGHFLVGG
FT                 PLMSTVEPEVKGETKSLLNRWQHLKALHQQFRVRWKEEYLKELHKRSKWQA
FT                 PSKNLRIDDMVVIKDDNLPSNEWRLGRIESVFPGADGNVRVVNIRTARGVI
FT                 KRPVAKVVLLPTESSKSPQ"
FT   CDS           6917..7852
FT                 /product="BEL-5_DMel-I_2p"
FT                 /translation="MAPRQQNARSARAVESRRTRGIQSYRCRVCRGIHPLR
FT                 KCARFLKLSAEKRLRAVLINKYCANCLAHEHSTGDCRSGDRCKKCDRSHHT
FT                 LLHMHEQVSSLSXSRARSRRQPVPTRQAASASSQRSRRHNPPTQRRSSPPR
FT                 RPESTTPGPSLSSLLQRHSVNILPTALVKLETGTKTFETAALIDPCSPMSC
FT                 IDASLASAFKLSMTNVGDEKVCTTTIRSRIDANTKLEVVLKIEPRVRIRTP
FT                 VRALSDTVVSKYRDIMLADDGFHRPATVSMVLGADIYPKVIQSGFLTFDEG
FT                 MPVAQKTVFGWIVSGACSLP"
XX
SQ   Sequence 7897 BP; 2114 A; 2047 C; 1727 G; 2008 T; 1 other;
     ttttggtcct tcgagccgga tctcctggat ttttcaagtt tgtccttcag cgaccaactt        60
     ataagataag tacgaaatct ccataccttt taattgccgg tctgcagcaa agggtcgaac       120
     atccaatttc gttcaatttg ctgtcagatt tattgtcaga tctaacggat ttctccgaca       180
     aaaggcaatt aaaggaaatt actatctatt atccattttc acgggcgccg ccatattacc       240
     caccgttcta aaattctaag ttccattttc cgaatatatt taaatattca tccgaacagt       300
     gcaaaattcc aaatgtggaa aagtgaaatt aatttgtgcc aagttcagtg aaaatttcta       360
     aagtccaaag ctctgccaaa agtggcaaac attccgtttt cgtttcactg tgtccaacgc       420
     aagccaaatt cttttcaaca catttgtttt gctttaactc cgcagtccgc tcaatacaat       480
     ttgctctgct atacatacaa acaacaaaca acacataccc gctggccatt ccaaggaaaa       540
     tattaattaa atattttccc gccatttacc catatacatt gcatgcatta catctccata       600
     tacatacata tacatataca tctccatata catacatata catatacatc tccatataca       660
     ttacatatcg taccgacata cattgcgcag attatctgca ttccctttaa ccaaagttta       720
     ccaaagttta aatcgcctgt gtctcaagtg ccgaggcaga aaaggcgtat aaccaaagtt       780
     tacttaagtt tagattgttt cccgtcggca aatccaaatc actaataaaa tttattccaa       840
     gtgccgacgc ggaaaaggcg ttttattttc catcaatgtt tttcggtaaa tttccaaatt       900
     aatttccgaa caataaataa attctaaatt aaattaaaca ttttcaatat ttattaaatt       960
     attttttaat ttgaaagttt tcaaaaaaaa aataattatc gataaataaa taatacgatc      1020
     gccacataca agtcgttcac ccgacaaata tttcattttc gtattgcttg gatattagtt      1080
     tgggggtgtt tttagaagta tttacaacgc ggagaaaaga cttcaattcc agtcattcca      1140
     tgttctccgt ttccagttgt aaataaaaga ataaaatttt cttcgttcta ataaacatct      1200
     tatatcaccg tgttccacat tccaagggtt ttaaccgtaa ataaggtgga cccaattacc      1260
     atagatcaca ggtcatttat acaattcgct gttcactccg agtcacctgt ccgattagcc      1320
     taaactacgg cggttccact tcgtaagttt tacaccactt aaattattaa gtgcagtctg      1380
     aggaatctgt ctactttttc aaaagtttga caggcttccc ttccatttcg catttctttg      1440
     attatgccca tcggggacga taagaagaaa ttgtccgctg acaagcccag gtctattttt      1500
     tcaccacaag ggcccaagag tccaagaatc ccaagcattt cggtgagaac gcctgcgcag      1560
     atttccgacg actgtgctac cccatccaaa gccacagtac agcgcacagc taaaaatatg      1620
     gctgcttcag atctagcgct agccaaattc atttcggttt ctgaccgctt aagcgaattt      1680
     gaggctcaga tcaacactcc ggaatccgca gctccaaccg tcacgatgct tggcgtccgt      1740
     cgcgaccaag tccgaaccct atgggacaag gttgagaagg aatacgatct ctgctcagag      1800
     tgccttgtgt cagcaggcga agcggcagca agcaacatgc ctattctcag ggctaaatac      1860
     agctattgct attcagtcta tgaaaggtgt gttgcccagc tcgttgataa aatcgagcag      1920
     ggcacttctc agtccatccc aaccgcgaac gctgcgcccc aggcctacat ttcctctggc      1980
     tgtcggttgc ctccatgcga tacagaagtt ttcgcaggcg actatcttcg ctggccgact      2040
     ttccgggatc ttttcacagc catttatatt aataatccac ggctgactcc agttgaaaag      2100
     ctattccact taaatgccaa aacaagtggc gacgcgcatg ccatagtttc gatttcgcct      2160
     ctcaccaacg agggtttccg ctctgcgtgg gaaaacctga tagagcgttt cgaaaataaa      2220
     cgattattgg taaacagtca attgaaaata ctgtttaatg tgcagtcgat accacaggaa      2280
     tctggggcgg ccttgaaggt actgcaaagt actgttcaag gttgcttgac tgccttagaa      2340
     ctgtcaggca tcaacacgga gaactgggac tgcctgctgg tatatctgtg ctcatccaag      2400
     ctcccgaaga taactctctc cttatgggag cagtcgctac ataagaaagc cgacatcccg      2460
     acatggggag agctgaacac cttcctcaca gaacgtcatc gaaccctaga agcaattgat      2520
     gatgtgagac cttccgtacc gagtcagtcg cattccaaag tgataaactc aagtgggccc      2580
     tctagaaaat taaattccta cgaggcgaaa gtggctccaa aattgaaaag ttgcgacttg      2640
     tgcaacaagg agaaacatcc tgtccgtgta tgtccgcggt ttctccaaat gtcggttgac      2700
     gaccggtcag cctacattaa acggaagcag ttatgcttaa actgcttcgc aacgggacat      2760
     cagcttcgtg agtgcaaaag cactcacaat tgttttactt gccgtggccg gcatcacacg      2820
     ttgttgcacc gaaacaacct ctgttccagc aattcaagcc cttcaaatcc tgcaaggcca      2880
     atttccgcta atcaggccaa tttcgttcca aatgaacaag ccggtgttca aaattatttc      2940
     gccacgggct caagagctat ccttcttggc actgccataa tcaatatctc ccatcttggc      3000
     actaacttta aggcacgcgc cctgatcgac tccggatcag aagcgacatt cataaccgag      3060
     cgactgttca atctaattag attgccattc caggtggttc aagcccaagt ctcgggctta      3120
     aaccaaacag tagctgctca gtccaagaag ctctgcagtt tcaccatccg atctccgact      3180
     aggcccgcgt tgcagttgga gacgacggcc tatgtcctcc ctcaactagc cggaaatctg      3240
     ccttcctacc caattccgca aaatttcctt cgggatcttc ccgattttcc actggcggat      3300
     ccaaaattct atgagagcgc acaaatagat gtacttatcg gagccgacat cctgccttcg      3360
     gtgcttctga gtggagcaaa aaccaacatc tgtggctctc tcttggggca agagaccatt      3420
     ttcggctggg tactaactgg gccagtgtca gcctcagccc aaagcagaat ttcctctttt      3480
     tcgacacaga tctcccaagc gcacgataat tcactggaca aactcctcac aaaattttgg      3540
     gaggtggagg atataccaac aaagttggta aaagaatccg attccatgtg cgagaagaat      3600
     ttccttcaaa cgaccacgag aagcgagtgc ggcaaatatg tcgttactct gccttttcgc      3660
     gaccccgaac atatcggttc cgggctaggg cattctaggt ctttcgcgtt ggctcagttc      3720
     ttaagaaatg agcagcgtct aaaaagagat gaggccttga aagcgagata cgattcggtg      3780
     atccaggaat atctcgactt aaagcacatg cgacaagttc ttcctacgca tgattgcaac      3840
     gcctattata tgccacatca cgccgtctta aaaccggaga gcgtaactac taaactccgt      3900
     gtagtattca atgcctccag cccatcatcg aatggtacca gtttaaatga tatccttcat      3960
     gctggccctg tcttacagtc cgacttgacc attcaaattc tgaagtggcg ctatttccga      4020
     tacgtgttca acgccgatat cgagaaaatg tatcggcaga tctgggtaga tccgagacac      4080
     actccattcc agcgaatact tttccgtaac aatagagggg aaatcagaga tttcgaactg      4140
     aaaacagtaa cctttggagt caattgcgcg cctttcctgg cgatccgagt actgcagcag      4200
     ctagcagctg acgtagaact cagccatcca aaagctagca atgtcattcg aaatttcatg      4260
     tatgtggatg atgttttagc tggagcggac tccacggaag aagctcagct catggtgcaa      4320
     gagctccgag acgcgctgaa ttctgccgga tttccattga ggaaatggac ctccaaccaa      4380
     aaggaagttt tagcggccat tcagagcaac catcttttaa atactgattt tctcgagatc      4440
     gatgcagaaa gtactgccaa aaccctcggt attcgctgga aagcaacctc cgacgaattc      4500
     ttcttcgtcc cgccagagtt ggctatcgaa acgtccttta caaaacgcca agtcctgtcc      4560
     caaattgcca aattgttcga ccctgccggc tggttagcac cgtttatcgt tcgagccaaa      4620
     attttcatgc aggagatttg gctgcaggaa cttgggtggg acgaaaacat tccaaatgag      4680
     ctttttcagc gatggctgaa ttttcttcaa agttattcag tgttagagca gatacgcatt      4740
     ccacgctggc tatcgtttcg tccagatttc aaggtcgagc atcatggctt ttgcgatgcg      4800
     tcgcaaaagg cttacggggc ggccatatat gtccgcgtag aagtgggcag caccattatg      4860
     gtgcaactcc tgaccgcgaa aacccgggta gcaccagtca aaacggtttc gctcccaaga      4920
     ttggagctgt gcggagcgtt attgctttcc gaaatggctg cagccatcat tccgcagatg      4980
     cctacgacta actccgaact ttactgttgg acggactcca cgatagtgct tgcatggtta      5040
     agcaagccag catgccagtg gaccacattt gtagccaata gggtgacgaa gatcgcccag      5100
     gccacaaaaa cagagaattg gtctcatgtt caatctgagc ataatccagc agacctggca      5160
     agtagaggag tttccctcca agatctagcc gatagccagt tatggtggca cggaccgact      5220
     tggttgcaaa atccacgcaa ccaatggcca actcaggtca acgctccggt gaccgacctg      5280
     gagaagcgtg ctctaaaagt ccatctcgcg aaagctcctt ctgaagagtt gttggcacgt      5340
     ttctccaagc tagagaaagc tctacgagtc cttgcctatg tttatcgctt cattcagcgg      5400
     tgcaggaagc agacatctcc agctgatgtg catctactgg ccactgaaat cgccgccgcc      5460
     gagcggttcc taatttcgaa cactcagcgc agagaattcc ctgtggaata tcactgccta      5520
     agtgaaaagc gtccagtgcc aagttcaagt gccatcctaa gcatgaaccc gtttctagat      5580
     ccgcaaggac tgatcagggc atgcggccgt gtggcggctt ccgaaagcct tcaatacaat      5640
     gaacgccatc cagtgattct tccgtataac tgcctgcttt ctcgcctcct tgcgaatttc      5700
     acgcatcgca taactctcca tggtggtaac cagttaatgg tgcgcctcat ccggtcgaaa      5760
     tactggattc cgagaatcaa gaacctgatg aaagcagtgg taaattcgtg caaagtatgt      5820
     gtgatccaca aaaagcggtt gcaaagccaa ctgatgggtg tcctgcccaa agaaagagca      5880
     tcgttctccc gaccattcac gtatactggc atggattacg ccggtccgtt cgatataaag      5940
     aactatacgg gaagagcatg tcttattaca aaggggtatg tgttagtttt tgtttgtttc      6000
     tccaccaagg ccatccactt agagcctaca tctgacttaa cgaccgagaa gtttcttgcc      6060
     gctttctctc gttttgtatc cagaagaggg tgtccacgtc aagtccagtc agacaatggc      6120
     aaaacctttg ttggtgctgc caccctgctt tcccgcgatt tccttcaagc cgtaaaagag      6180
     tcggtgacga atgcctatat tcatcaagag atgcaatggc aatttattcc tccgggagca      6240
     ccccatatgg gaggcctttg ggaagcaggc gtaaaaagct tcaagacgct attttacaaa      6300
     tgcactgcca cacgaaaata cacgttcgaa gagctctcca cgctcttggc aaaaatagaa      6360
     gcgtgcctta actccaggcc gctctctcct atgtctgaag atccgacaga cttgctggct      6420
     ctgacgccag ggcatttcct tgtcggggga ccccttatgt ccacggtgga acccgaagta      6480
     aagggggaaa cgaaatccct tcttaaccgg tggcagcatt tgaaggctct ccatcagcag      6540
     ttccgtgtgc gatggaaaga agagtacctc aaagaactcc acaagcgttc taaatggcag      6600
     gccccgtcca aaaatctacg catcgatgac atggtcgtca tcaaggacga caacttgccc      6660
     tctaatgagt ggcggctcgg cagaattgag tctgttttcc caggagctga cggcaacgtc      6720
     cgtgtagtaa acatccgtac tgcacgtgga gttattaaac gtccagtggc aaaagtggtg      6780
     cttttgccga cggagtcttc caaatctcca caataatagg cgctcctctc gtccttagtt      6840
     gtagttcact atcactaatc atccgttatt tttcatttcg ttttcgatct cctttcgaca      6900
     ttcgactacc cgcagcatgg ctcctcgtca acaaaacgca cgcagtgctc gtgccgtgga      6960
     gagcagacgt acccgaggta ttcaatccta ccgatgccga gtctgccgcg gtatccatcc      7020
     tcttcggaag tgcgcgaggt tcctaaagct cagcgctgaa aagcgtttgc gagcagtcct      7080
     cattaacaaa tactgcgcca attgcctcgc tcacgagcat tccacgggag actgccgaag      7140
     cggtgatcgt tgcaagaagt gcgaccgatc ccaccacacg ctgctccaca tgcacgagca      7200
     ggttagctcg ttgtcgsggt cgcgagcgcg ctcgcgtcgc caaccggtgc caacccggca      7260
     agcagcttcg gcctcgtccc aacgttcccg caggcacaat ccgccaactc agcgtaggag      7320
     ttcaccgcca cgacgaccgg aatcgacgac gccaggccca tcgctctcgt cgctgctgca      7380
     acgccacagc gtgaacatcc ttcccacagc gctggtcaag ttggagaccg ggacgaagac      7440
     cttcgagacc gcagcactca tcgatccgtg cagccccatg agctgcatcg acgcttcgtt      7500
     ggcgtcagcc tttaagcttt cgatgaccaa tgttggcgac gagaaggtct gcacgacgac      7560
     gattcgctcc aggatcgacg cgaacacgaa gctcgaggtc gtgctcaaga tcgagcccag      7620
     ggtgcggatc cgtacacctg tccgggcatt gagcgacacc gtagtgtcca agtacaggga      7680
     catcatgctg gcggatgacg ggttccatcg gcctgctacc gtatccatgg tcttaggagc      7740
     agacatttat cctaaggtta tccaatccgg attcctgacc ttcgacgagg gaatgccggt      7800
     cgctcaaaag accgtgtttg ggtggatcgt gtccggtgcc tgcagcttgc cgtaggatgg      7860
     ctatgttgca accccagtga ttgcaagggg ggcggaa                               7897
//
ID   BEL-5_DMel-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   04-AUG-2018 (Rel. 24.06, Created)
DT   04-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-292
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1055-1055 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 292 BP; 62 A; 95 C; 56 G; 79 T; 0 other;
     tgttcgagtt acggggtttg gactgtcacc cgctctccgc tccctcttac gttctccact        60
     ccctcttacg ctctcccgct cttcaccaca gagtctccga ggagtctccg ctgcgcttgg       120
     gagaacccaa cgcattagaa taagctttag tgtgtaaaac tacctcgaac aataaagcat       180
     acgccggtcg cgcccgcgct aattctacaa gtcttcgagt gttttttcga gtgctctttt       240
     ttttcagcaa actaggaatt ttccaggacc agcacccccc atcaccccaa ca               292
//
ID   BEL-5_DMoj-I repbase;    DNA;    INV; 6417 BP.
XX
AC   .
XX
DT   01-APR-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DMoj_;
KW   BEL-5_DMoj-LTR; BEL-5_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6417
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1261-1261 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5448-6020] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1209..6371
FT                 /product="BEL-5_DMoj-I_1p"
FT                 /translation="MTNKRGKNRSMDESSSERVEALLAVYKNVTNDITRIN
FT                 KSLKDYTKPVEPFEIECRLEILNRYIEKAFKTQQELDDINADLVPRSTLED
FT                 LCVSTKALLMKRGSDSQPKSESPANSTMISSVSHSRNLPNIKLPKFSGEYS
FT                 EYKNFIGLFESLVDNEPGLSNIEKFNHLLSCLDKEALGTVKAYQVTDANYP
FT                 KALAALKNVYDNQCLIFFNSISKLFDLPHMSEPSASSLRMLIDSVRAIYES
FT                 LLSLGSDKQISNAMLIHLVMMKVDAGTRSRWEENLDYNKLPLWQDCEAALN
FT                 RRYQHLSAEDSSGPRRKVAQDNKKRIGKTSLAVALPSEPQSPKCVFCKKND
FT                 HFIHSCSSFAAIPCQKRFTFAKSYPLCINCLRTGHSVAACKSAHCRVCSKP
FT                 HHTILHRYSSEAAQSSSAVVSAVPRVTSSQISSVNHARIASDQVLLATAVV
FT                 KIKDQSGSYHLARALLDSGSQVNFITEELAKQLKLKRQRSGIQLLGIANCQ
FT                 SSVRHSVQTSIASRTDDIEIRTDFGVLRSISSYQPEKHTEEIKVPDNVQLA
FT                 DPQFHKPQRIDLLLGADIFFDILREGKIKGSDNNPTLQLTAFGWIVSGRCR
FT                 TLNAATSSSTFISVVNDDIAIDSIVRKFWELEEKPNTINSNLYTPEQQLCE
FT                 KSFVETICQTTSGRFRVSLPFKSSPHCLGTSYDTAKRRFLALERRMSKQED
FT                 IRPMYIDFMKEYLALGHMSPTNNQIPREPHYFIPYQCVLRPHSASTKLRVV
FT                 FDASSKSSSQLSLNDLLMVGPTIQPQLWETLLRFRLRPWAATADIAKMYRQ
FT                 IELDESHRNFQLIVWRETPTDPLQIFRLNAVTYGTATAPFLAIRCLKHLSD
FT                 LHASTHPAAARSLARDFYVDDLLTGADSVEELCLLHRDLIAILQKFGFPLT
FT                 KWSSNCKQLAAQPARNDIVIGHQEDTKTLGLIWNPMNDSFRYSMNCPVEVQ
FT                 QTKRSVLSFVARLYDPLGLLSPIVTRAKVLLQEMWLHKLGWDDQLPVQMRQ
FT                 EFEAVTSCFSNLNSLHIPRYVGTLKSKGCQIHGFADASTRAYGCCLYVRMQ
FT                 TDKGITTRLLVAKSKVAPLKTKSVPRLELCAAELLATLWDAVRKVLDCPIN
FT                 QVTFWSDSEVVLHWLRMHSSSLNTFVANRVATIQELTTNVSWRHVPTKDNP
FT                 ADIVSRGCSVEELKTSLWFCGPGFLKLSDTLWPANPQITLSKELELLEKRR
FT                 TAITMIAVDEVANPIVHLIESTSSFSKLIRIVAYMFRFIDGKQESHSSLVP
FT                 TASELSFAFLAVISVIQHIEFSEEIKKIKKSVVLQPSLQKLTPFLHPHQHG
FT                 RRMLWLLRVGGRLLKAPLAHNAKFPLLLPKKCRFVTLYLEHLHRSHCHANP
FT                 LVLMGLLRQQVWLVNARQACSAVVRKCVHCFRYKPKLLSQIMGNLPADRLH
FT                 GNRPFEISGVDFCGPILVSLGIRGKSPVKMYIAIFVCFTSKAVHLELVTDL
FT                 TTNSFLMCLSRFVGRRGLVRKLYCDNATNFVGAARTLDLKATFHGNTADME
FT                 MFAAERGMEFVFIPPRAPHFGGLWEAAVKSAKGLLLKAMGSARLRQDEVAT
FT                 VLVEVEAVLNSRPMVAPSSNPNDGEVLTPGHFLIGATLVPLPIASTEPVDD
FT                 VKLTLLKRWQLTSNIKRRFWNDWSRDYLLSLQQKSKWTKERQNIQVGAVVL
FT                 VGEDNAPPQQWMLGVVTEAIVGGDGRVRVIVVKTKNGTYKRAIHRVAPLPL
FT                 H"
XX
SQ   Sequence 6417 BP; 1782 A; 1445 C; 1395 G; 1795 T; 0 other;
     tttttggcgc ccccgggtgg acactctctg gaattgaagg aagctggatt atggattttg        60
     tggataatca gggaagtaca taaatacata gagcacatag atgaccaagt aatgcaagcc       120
     ataaataaat aaatgcatta cttgagacat acaaaatatt aatgtatgta caatctacgc       180
     ctatgtacat tgtgttgagc ttatttcaaa ttgaaattta aaaaaaataa ataaaaataa       240
     taataaggtg catattgacc tttgatctgc aaataattca atctctattg cctcgcataa       300
     tccaagtttt ctttggcgcc gctagtgtgt tacagttttt ttgctcattt tcgtctcgca       360
     ctttcgtttt gcgcttgcgc tcacagctcg ctctcgctcg cacataaaag ttcgttctcg       420
     cttgcacaga taattgcgct cttaatttac gctcttcatt tgcatgcgcg cttgcaatat       480
     cgtttgcact cgcgcttgca cttatagttg cgctctcgtt ttactgtctc gcttgcacat       540
     attagtgcgc gctcactttg cgctcagtgc atactcactt gctatatcgt ttgcactcgc       600
     gcttacacag caaatttcgc tttaatttac gctcatcatt tgcatgcgcg cttgcaatat       660
     cgtttgcact cgcgcttgca cttatagttg cgctctcgtt ttactgtctc gcttgcacat       720
     attagtgcgc gctcactttg cgctcattgc atactcactt gcaatatcgt ttgcacccac       780
     gcttgcacac gcagcagcgc tctcgctttg cgctcaaaac gtgcgctcgt cacttggata       840
     tattttcgct caaaacttgc actctcgctt tgcgctcatt gtatgagctc gatctgcact       900
     tatattttgg cattcatacc ggcgcgctct cgcttgtgaa tgcattgcac tcagtcgctc       960
     aacagtcaaa tataactcaa tagaccactt gcccaaatag tcactcaaca ttttggttgt      1020
     tgtcttcgct atatcgtaac agtcactcaa gtatagttta acactgccag cgtaatatat      1080
     tgagatttat tacgatcgcg cgcatttgtt aacattcttg aattgctctt cgcttgttgt      1140
     catacattaa gtgaactttt atttgtttcg attgaaattg gtttcaactg agcatcactt      1200
     atagcatcat gactaacaag cgaggaaaga ataggtctat ggacgagtca tcatcagagc      1260
     gtgtcgaagc tctgttggcc gtttacaaaa atgttacaaa cgacataaca cgcattaata      1320
     aatcattaaa agattacact aaaccagtag agccatttga aattgaatgt cgacttgaga      1380
     tattgaaccg ctacatagaa aaggccttta agacacaaca agagttggac gacattaacg      1440
     cagatttagt gcctcggtca acgttagaag atttgtgtgt atcgacaaaa gcacttctta      1500
     tgaagcgagg tagtgatagc caacctaaaa gtgagagtcc cgctaactct acaatgatta      1560
     gctcagtgtc acattctagg aatctaccga atataaagct gccaaagttt agcggagaat      1620
     attcggaata taagaatttc attggacttt ttgagagttt agtcgacaac gagccagggt      1680
     tatcaaatat agaaaagttt aaccacttgt tgtcatgctt ggacaaagaa gcattaggca      1740
     ctgtcaaggc atatcaggtg acagatgcaa attatccaaa agcgttagct gctttaaaaa      1800
     atgtgtacga caatcagtgt ctcatatttt ttaacagcat ttcaaaacta tttgatctcc      1860
     cacacatgtc cgaaccgtca gcatcatctt tgcgcatgct gatagactca gtccgtgcca      1920
     tttacgaatc tcttttatcg ctaggatctg ataagcagat ttcgaatgcc atgctcatcc      1980
     atttggtaat gatgaaagtg gacgctggca cgcgctctag gtgggaagag aatcttgact      2040
     acaataagct tccattgtgg caagattgtg aagctgcctt gaacagacgg tatcagcatt      2100
     taagtgctga agactcatct ggtccacgtc gtaaggtagc tcaggataat aagaaaagaa      2160
     ttgggaaaac ttctctagct gtcgctctgc caagtgagcc gcagagtccc aaatgcgtgt      2220
     tttgtaaaaa gaacgatcac ttcattcact cgtgctcgtc gttcgcagca ataccttgcc      2280
     agaaacgttt tacgttcgca aagagctatc cgctctgtat aaattgtttg cgaacaggac      2340
     actcagtggc tgcttgcaaa tcagcccact gtcgtgtgtg ctctaagccg caccatacca      2400
     tactgcatag atacagctct gaagcggctc aaagtagctc agcagttgta tcagcagtcc      2460
     ctcgtgtcac ttcgtcacag atttcatctg taaatcacgc acggatagcc tctgatcaag      2520
     ttcttttggc aactgcagtt gtgaagataa aagatcaatc tggatcttat cacttagcta      2580
     gagctttatt agattccggc tcgcaagtaa atttcataac tgaagaactg gcaaaacagt      2640
     tgaaattaaa acggcaaaga tctgggattc aattgttggg cattgctaat tgtcagtcat      2700
     ctgttcggca cagcgttcaa acttcgatag cgtcccgaac ggacgacata gaaatccgaa      2760
     cagactttgg tgtgttacgt tccatttcgt cgtatcaacc agagaagcac actgaagaga      2820
     tcaaggtacc tgataatgta caattagctg atcctcaatt ccacaagccg caacgtattg      2880
     atttgttgct cggtgctgat atcttttttg atatattaag agaaggcaaa ataaaaggat      2940
     ccgataacaa cccaacattg caattgactg cctttggttg gattgtatct ggtcgctgcc      3000
     gaacattgaa tgcagctact agttcgtcga ctttcattag cgtcgtaaac gacgacatag      3060
     ctatagattc aatagttcgc aagttctggg agttggaaga aaagccaaat acaattaatt      3120
     cgaatttgta taccccagag caacaactgt gcgagaagtc atttgtggag actatttgcc      3180
     aaactacctc gggtcgtttc agagtgtcgc tgccattcaa atcaagccca cattgtcttg      3240
     gtacgtctta cgacacagcc aagcgacgat ttctggcctt ggaaagaaga atgagcaagc      3300
     aagaagacat tcggccaatg tatattgact ttatgaaaga atacttggcc ttgggtcaca      3360
     tgagcccaac taacaatcaa attccgagag agccgcatta tttcatccca tatcaatgcg      3420
     tgctaagacc gcacagcgca tccactaaac ttcgagtagt gtttgatgcc tctagcaagt      3480
     cctcctctca attgtcgctg aatgatctac tcatggtggg tccgaccatc cagccgcagt      3540
     tatgggagac tttgctaaga tttcgacttc gtccttgggc tgctacagca gacatcgcta      3600
     aaatgtaccg tcaaattgaa cttgacgagt cccaccgcaa ctttcaactt attgtgtgga      3660
     gggaaacgcc cactgatccg ttacaaatct ttcgattaaa cgcagtaacg tacgggacag      3720
     cgactgctcc attcttagca attcgatgtt taaaacatct aagcgacttg catgcttcca      3780
     ctcatccagc tgctgcaaga tcgttagccc gagatttcta tgttgatgac ctgttgacag      3840
     gagcagatag cgtcgaagaa ttgtgcttgt tgcatcgaga cttgatcgca attcttcaaa      3900
     agtttggatt tcctctcaca aaatggtcgt ccaattgtaa acaactcgca gcacaaccag      3960
     ctagaaacga tatagttatt ggtcatcaag aggacacaaa aacattggga ttaatttgga      4020
     atccaatgaa tgacagcttt agatattcca tgaactgtcc agtagaagtt caacagacca      4080
     aaagatccgt tttgtcattt gtagcaaggt tatacgaccc cttaggtttg ttaagtccga      4140
     tcgtaactcg tgcgaaggtc cttttacagg aaatgtggtt gcacaaactt gggtgggatg      4200
     accaattgcc tgttcaaatg aggcaagaat ttgaggcagt aactagctgt ttctcaaatc      4260
     taaactcgtt gcatatacct cgttacgttg gcacacttaa atcgaaagga tgtcaaatcc      4320
     atggatttgc tgatgcctca acgagagctt acggttgttg tttatacgta agaatgcaaa      4380
     cagataaggg tatcactacc aggctgctag tcgctaaatc taaggtagcg cccttgaaaa      4440
     caaaatctgt tccgcggctg gagttgtgtg ctgcagaatt gttagctacc ttatgggatg      4500
     cggtaaggaa agtacttgat tgtcctatta atcaagtcac attttggtca gactctgagg      4560
     tggtgcttca ttggctgcga atgcattcat ctagcttgaa cacattcgtt gctaatcgcg      4620
     ttgcaaccat ccaagagttg acaactaatg tatcttggcg tcatgtacca acgaaagaca      4680
     acccagcaga tattgtatct cggggatgtt cagttgagga gcttaaaaca tcattgtggt      4740
     tttgcggacc aggattttta aagctctctg acacattgtg gccagccaac ccacaaatca      4800
     ccctatcaaa ggagttagag ctgctagaga agcgtagaac tgcaattact atgatcgcgg      4860
     tcgatgaggt agcaaatcct atcgtacatc ttattgagtc aacgtcatca ttttctaagc      4920
     taatccgcat cgttgcctat atgttccgct ttatcgatgg aaaacaagaa agtcattctt      4980
     cacttgttcc tacagcttct gagttaagct tcgcattcct tgcagttata tctgtaattc      5040
     aacacattga attcagcgaa gaaataaaga aaataaagaa gtcagtcgtg ttgcaaccgt      5100
     cattgcaaaa actgacacca tttttgcacc cacatcagca tggcaggcgt atgttatggt      5160
     tgctacgagt aggaggtcgt ttattgaagg caccattagc acataatgcc aaattcccat      5220
     tgttgcttcc aaaaaagtgt cgtttcgtaa cgctttattt ggagcatttg catcgctctc      5280
     attgccacgc caatccccta gtactaatgg gcctgcttcg tcagcaggtt tggctggtca      5340
     atgctcgaca ggcttgcagt gcagtagtcc gaaaatgtgt acattgtttt cgctacaagc      5400
     cgaaactctt atcccaaata atgggcaatc ttcccgctga tcgcttacat ggaaataggc      5460
     catttgagat cagtggagtg gacttttgcg gtccaatact agtttcgctg ggaattcggg      5520
     gcaaatcgcc agtcaaaatg tatattgcca tatttgtttg ctttacttcg aaggcagtgc      5580
     atcttgaatt agtcaccgat ttaaccacaa attcatttct aatgtgttta tccaggttcg      5640
     ttggtcgacg tgggcttgtc cggaagctgt actgcgacaa tgccaccaat ttcgtgggtg      5700
     ctgcacgcac gctggacctc aaagctacgt tccatggcaa cacagcggac atggaaatgt      5760
     ttgctgcgga gcggggcatg gagtttgtat tcatccctcc tcgagcgccg cattttggcg      5820
     gcctttggga agcggcggtg aaatccgcca aaggtttgct gctgaaagcg atgggcagcg      5880
     ctcgattacg gcaagacgag gtggccaccg tgctggtcga ggtcgaggcc gtgctcaatt      5940
     cgcggccaat ggtcgctccc agcagcaacc ccaacgacgg cgaagtgctc acgccagggc      6000
     acttcctgat aggagcaacg ctcgtgccgc tgccaatcgc gtccacagag ccagtcgacg      6060
     acgtcaagct gacactatta aaaagatggc agctgacatc caacatcaag cgtcgatttt      6120
     ggaacgactg gtcaagggac tacctgctca gcctgcagca gaagtcaaaa tggacgaagg      6180
     agagacagaa catacaggtc ggagcagtcg tgctcgtggg agaggacaac gctcctccac      6240
     aacagtggat gctaggcgtg gtgacggaag ccatagtcgg aggagatggt agagtgcgcg      6300
     taattgtcgt taagacaaaa aatggcacat ataaaagggc aattcatcgc gttgcaccac      6360
     tgccactcca ctaatacacc atgttattga agccctgcgg cctttcaacg cggccga         6417
//
ID   BEL-5_DMoj-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   01-APR-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DMoj_;
KW   BEL-5_DMoj-I; BEL-5_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-398
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1262-1262 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 398 BP; 115 A; 71 C; 79 G; 133 T; 0 other;
     tgttaaggca tttggatatt gccttctgaa atattattat atattattat aagaaattga        60
     attattatga attattaatt gaattattat cgaaattgta taggttaagt acttgaagct       120
     gaaccactgt acagagaagt tgttattgta cgcgctagca cgggagtgtc gctctccaaa       180
     agatcgctct ctcgctgctc gctgttagat gcgcataggt gcgctctcta ctgtgcaagc       240
     tgcgcttgcg ttcatgttaa atttaataaa ttcagtacaa aattgaacac cggtgccagc       300
     acttcgtata tttcagagag accgcaagtt gctgtctact tttttttata aatattatac       360
     actggccatc gaaggaccag actccttttg gaaggaca                               398
//
ID   BEL-5_DPer-I repbase;    DNA;    INV; 5615 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.08, Created)
DT   01-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DPer_;
KW   BEL-5_DPer-LTR; BEL-5_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5615
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1475-1475 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4647-5231] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..5615
FT                 /product="BEL-5_DPer-I_1p"
FT                 /translation="MAAPEPTNVANAAMPSDVDFYKHKAESIARQLKAMDR
FT                 FLTKEELAELDEAELQARLEQIERMNADFDAAQTSLERLDFLQLAHDARLD
FT                 FSNVYVKVRSRLSRELMAARTVNVANSTARHTLEGNSSLFAYNSIGRSRMP
FT                 ELQLPRFGGNYMDWPEFHSMFSTMVHKDHRIPIIEKFQYLRGCLDGAALDT
FT                 IRSLELSEENYDKALNLLMLRFDNKLLHFQAHVKAIFGLQGVEKGSAIGLR
FT                 ALSDKINSHLRALQTLATPQEISDGLLIFIIGTKLDHKTKEKWEENLPTSG
FT                 LPRWSSMASFLEARCRMLENLGSAMVTIPSQQVGESKPSTLITSINDHNSS
FT                 TCKYCKSSDHYISRCQAFLDLPVFSRYKEVKKRHLCLNCLNKGHSLQRCKS
FT                 GACRNCQAKHHTLLHMQSGADAELPSPSTEPTQHDPASALVASKYTSPPPS
FT                 SQKSLPSQNVLLATAIVYVRGRFGSLIPCRAILDSASQVNFITSRLANQLQ
FT                 LDPHPSHVQIAGIGESILPSSKAVDIVLQSQDESYHGFLSAIITASITGMQ
FT                 PNFGLDAKDWPMPNNLKLADPNFAKPQRVDLLIGAGLFFELMCVGQIRLSD
FT                 QLPTLQKTKLGWIVSGSIKNSEKARAALAAVEDPPVISACETNLCDIVRRF
FT                 WEVDGDYSPSSISEEDVHCEQHFVTNCIRLDSGAYSVRLPTKFSLEELGES
FT                 YQQALRRFLNLERKLAKNAQLKAKYMEFLQEYRDLGHMSPASRQSDLPQYF
FT                 LPHHCVHKQDSTTTKLRVVFDGSAKTASGVSLNDALMAGPTIQPKILITLL
FT                 RFRFFKVALCGDICKMYRCVRVSHPDTHVQCILWRNDPKEEIQVFKLETVT
FT                 YGTKPAAFLAIRAMHQLANDEELRFPLGADVVRRDFYVDDLISGGDSIDSV
FT                 IKIRQQVKELLSKGCFPIRKWCSNEPAALEGVSEADREKFLTFHDGTEVTK
FT                 ALGLVWDPTTDNLLFSFAHVGTAAGPISKRSVLSTLARFYDPLGLISPIIT
FT                 KAKIFMQSLWNESLKLNWDESLPQDLHTTWIELTSQLSMVENFKFPRYVLR
FT                 QQARLEMHAFCDASQAAYGACVYMRSEALGIVQSHLLCSKSRVAPLKSMTI
FT                 PKLELSAALVLAELVSTIVKGLSAPCQIHCWSDSSIALAWIRESPLNFNIF
FT                 VSNRVQRIQELTAGMTWHHVPTKLNPADIISRGSTPAELMDSSLWISGPPF
FT                 LRLESSEWPAGLQLPTDVPERRHAALVVSNERDVSYDCKFQNSFGSMQRVF
FT                 AYIYRFYILKDKGIARSKGQLTVIDIKNGTHLLIRAIQQQQFSEEIRALAS
FT                 KQALPPKSTMASLNPFLDSFGLLRVGGRLQNAELDYDAKHPILLPKGHPVT
FT                 VSIIIFFHERFLHAGAQGLLGLLRQKFWPIGGRKYVAGIIRKCVRCFRLKP
FT                 VLREHIMGNLPADRVRTNPAFHTTGVDFCGPFYHKSEVRSRPPIKCYIAVF
FT                 VCFSTKATHLEVVRDLSTESFLAALRRFISLRPKPRIIWSDNATNFVGAKN
FT                 ELLELRQMFLSDPHTSAVSHLCVSSGIDWKFIPPRSPHFGGLWEAAVKAAK
FT                 YHFHRIVGTYIFTLDEIQTLACEISALLNSRPLYAITESPDDLDVLTPNHF
FT                 LNGAPKAAFDEPDVTHLRVNLLSRWQRLCQMKQAFWRKWSTAYLSILQERS
FT                 KWRSSSPNIKLGALVMMKEETLPPLRWPLGRIESVIPGKDGTIRVAVIRTQ
FT                 RGLFKRAVGKIAVLPLQDGSVESLCLPTGGE"
XX
SQ   Sequence 5615 BP; 1443 A; 1385 C; 1334 G; 1453 T; 0 other;
     taaaatttgg tgaccccgac gtgatctctg agttgcagtg tcaattaata atcattcgcg        60
     atcgacattc gttagcctta acaaattttc ggcggttaag cacaattcgg tgctaaaaca       120
     tacttacata cacctacata cacgcattgc tggctattaa tttctctgtc gcgacaattc       180
     ggtcagtgca gtgcagcgaa ctcactaata cacacaagcg gagtacaaag cggaatcgga       240
     cagctcgcac agccgcacag ctaaaggcat tagctgtaat ccctttgctt tcggttccca       300
     cgtttatacg tatacagggt gtctttttcg gtcgtgctga gtgactcttt taaaacctca       360
     acatggcagc acctgagcct accaatgtcg cgaacgcagc aatgccgagt gatgtagatt       420
     tctacaagca caaggccgag tccatcgcgc gccaactaaa ggccatggat cgctttctca       480
     ccaaggaaga gcttgccgag ttagatgagg cagaacttca agctcgctta gagcaaatcg       540
     agcgaatgaa tgcggatttc gatgccgctc aaacgagcct tgaaaggctg gatttcctgc       600
     agttagccca tgatgcccgg ctggactttt cgaatgttta tgtcaaggtt aggtccaggc       660
     tgtcgcggga gttgatggct gctcgcacgg taaatgttgc caattcaacg gctcggcata       720
     ctctcgaggg gaattcgtcg ttgttcgcct ataatagtat aggccgttct cgaatgcccg       780
     agttgcagct tccgcgattc ggtgggaact acatggattg gccagaattc cactcgatgt       840
     tctcgacaat ggtgcacaaa gaccatcgta taccaatcat cgaaaaattc caatatcttc       900
     gtggatgtct agatggtgct gcgctggata cgattcgttc cttggaactt tctgaggaga       960
     attacgacaa ggcgttgaat ttactaatgt tgcgattcga taataaactg ttacattttc      1020
     aggcacacgt caaggctatt ttcgggctgc aaggggtgga gaagggctcg gctatcggct      1080
     tgcgcgcgct cagcgacaaa atcaattcgc acttgcgtgc acttcagacc ttggcgaccc      1140
     cgcaggagat ttccgatggg ttgctgatct tcatcatagg cacgaaattg gaccacaaga      1200
     ccaaggagaa atgggaagag aacttgccga cgtcaggatt gcctcggtgg tcaagcatgg      1260
     cctcattctt ggaagcaaga tgtcggatgc tggaaaattt gggatcggct atggtaacaa      1320
     ttcctagcca gcaggtggga gaaagtaaac ctagcaccct aatcacctcc attaacgatc      1380
     ataatagctc aacatgcaag tattgcaaat cctccgatca ctacatatcc cgatgccagg      1440
     catttctaga tctccctgtt ttttctcgat acaaggaggt gaagaagcgc catttgtgtc      1500
     taaactgcct caacaaaggc cattcattgc aacgctgcaa gtcaggggca tgtagaaatt      1560
     gccaagccaa gcatcacaca ctgctccaca tgcagtcggg cgctgacgct gagttgccgt      1620
     cgccgagcac ggaaccgacc cagcatgatc ctgcaagtgc cctagtagca agcaaatata      1680
     ccagccctcc cccctcgagt cagaaatctc tgcctagcca aaacgtgctg ctagctaccg      1740
     caatcgtata tgtcaggggc cgttttggat cgcttattcc atgtcgtgcc attttagatt      1800
     ccgcttctca ggttaacttt ataacatcga gactcgccaa tcagctgcag ttagatcctc      1860
     acccgtctca cgttcaaatc gccggtattg gagagtcaat tctaccatcc agcaaggctg      1920
     tagacatcgt cctgcaatct caagacgaaa gctatcacgg tttcctctct gcaattatca      1980
     ctgcctcaat cacaggaatg cagcctaact tcggcctaga cgcaaaggat tggccaatgc      2040
     caaataatct aaaactggct gatcctaatt tcgccaagcc ccagcgtgtc gatctgttga      2100
     taggtgctgg tttgttcttc gaattaatgt gcgttggaca gattcgactg tcagaccaat      2160
     tgccaacatt gcagaagacg aaacttggct ggatagtgtc aggaagtatt aaaaactctg      2220
     agaaagcccg tgcggcgcta gcagccgttg aagatccccc tgtcatctcc gcttgcgaga      2280
     ctaatttgtg cgatattgta aggcggtttt gggaagtcga tggagattat tcgccctcat      2340
     caatttcgga ggaagatgtt cattgcgaac agcatttcgt cacaaactgc attcgcctag      2400
     attccggagc ttactccgtg cgtttgccaa ccaaattcag tctagaggaa ttaggagaat      2460
     cgtatcagca ggcgctacgt agatttctca atttggagag gaagctagca aaaaatgcac      2520
     agcttaaggc aaaatatatg gagtttctcc aggagtatcg tgatttagga cacatgtcgc      2580
     cagcttcgcg gcagtcagac ctcccgcagt acttcttgcc tcaccattgc gtccacaagc      2640
     aggatagtac aaccaccaaa ttacgcgtag tgttcgatgg atctgccaaa acagcgtctg      2700
     gagtatcact gaatgatgcg ctaatggctg gacccaccat ccaacctaaa attctgataa      2760
     ctctgcttcg tttccgcttt tttaaagtcg ccttgtgtgg cgatatctgc aaaatgtacc      2820
     gctgtgtacg cgtttcccat cccgatacgc acgtgcagtg catcctatgg cgcaatgacc      2880
     cgaaggagga gattcaggtg ttcaagttgg agactgttac ttacggaacc aaacctgccg      2940
     ctttcttagc aattcgtgct atgcatcaat tggcaaatga tgaagagttg cgttttccgc      3000
     ttggcgctga tgttgttcga agagatttct atgtcgatga tctcatatct ggaggggaca      3060
     gcattgattc tgtcatcaag attcgtcagc aggtaaagga gctactttcg aaaggatgtt      3120
     ttcccatacg taaatggtgt tccaatgaac ccgctgcttt ggaaggcgta tcggaggcgg      3180
     atcgcgaaaa gttccttacc tttcatgacg ggactgaagt aaccaaggcg cttggtctag      3240
     tttgggatcc caccacggac aatcttctgt ttagcttcgc tcacgtcgga accgctgcag      3300
     gcccaatatc gaagcgttcg gtcctgtcta cactagctag gttctacgat cctctagggc      3360
     tcatctctcc catcatcaca aaagctaaaa tatttatgca gtcgctatgg aacgaaagcc      3420
     taaagttgaa ttgggacgaa agcctgcccc aggatctaca tacgacttgg attgagctga      3480
     cttcgcagtt gtcgatggtt gaaaacttta agtttccacg ttacgtgctt cggcagcaag      3540
     ccagattaga aatgcacgcg ttttgtgatg cgagccaagc agcatatggc gcctgtgtat      3600
     acatgcgttc ggaagctctt ggcattgtgc aaagtcatct cttatgctct aaatccagag      3660
     tcgcgccctt gaaaagtatg actatcccca agcttgagct atccgctgcc ctcgtattag      3720
     ccgaactagt gtccaccata gttaagggat tatcagctcc atgccaaata cattgctggt      3780
     cggattcgtc catagccctt gcctggattc gagaatcacc attgaatttt aatatatttg      3840
     tttctaatcg agttcagcgg attcaggagc tcaccgctgg aatgacttgg catcacgtgc      3900
     ccacaaagtt gaatcctgcc gacatcatat cacgtggatc cacgcccgct gaactaatgg      3960
     atagcagcct ttggatctct ggaccaccat tcttgcgtct tgagagctca gagtggcctg      4020
     caggcttgca attgccgacc gatgtaccag aacgtcgtca tgcagcattg gttgtttcaa      4080
     acgaaaggga tgtatcgtac gattgcaaat ttcaaaactc attcggatcc atgcagcgcg      4140
     tctttgctta catatatcga ttctacattc tcaaggacaa aggcatagcg cggtcgaagg      4200
     gtcaacttac cgtaatcgac atcaaaaatg gtacgcattt gctcataagg gcaatacagc      4260
     agcaacaatt ttcggaagag ataagggccc tcgccagcaa acaggcccta ccgccaaaaa      4320
     gcacgatggc ctcactgaat ccatttctgg atagctttgg attgctgcgg gttggaggcc      4380
     gcctccaaaa tgccgaattg gactacgacg cgaagcaccc gatcctgctt cctaagggac      4440
     atcctgtcac tgtctctatt attatcttct ttcacgaaag gtttctccac gcaggagctc      4500
     aaggattgct cggactgctt cggcaaaaat tctggcctat tggtggacgc aaatatgttg      4560
     cgggaatcat tcgcaaatgt gttagatgct ttcgtttgaa gccagtgctg agggaacata      4620
     tcatgggaaa cttgcctgcg gatcgcgtaa ggactaatcc agcattccac acaacgggcg      4680
     ttgatttttg cggacccttt tatcacaagt cggaagtcag aagcaggcct cctatcaaat      4740
     gttacatcgc tgtcttcgta tgctttagca ccaaagcaac tcatttggaa gtcgttcggg      4800
     atctatctac agaatccttt ctggcagcat taaggcgttt tataagtcta cgtcccaaac      4860
     ctcgaatcat ctggtcagac aacgcaacaa attttgtagg agcaaaaaat gagcttttgg      4920
     agcttcgtca aatgttcctc agcgatcctc atacgtcggc tgtgtcacat ctctgcgttt      4980
     ctagtggaat cgattggaaa ttcatccccc ctcgctcacc tcattttggg ggtttgtggg      5040
     aggcggctgt taaagcagct aaatatcatt ttcatcgcat cgtcgggacc tacattttta      5100
     ctcttgatga aattcagacc ttggcttgtg aaatctctgc tttgttaaat tcccgtccgc      5160
     tttatgcaat tacagaaagt cccgatgacc tagatgtgct cacgccaaac cactttctca      5220
     atggagcccc gaaagctgca ttcgacgagc cagatgtgac gcatctccgg gtcaacctac      5280
     ttagtcgatg gcagcggctg tgtcaaatga agcaggcgtt ttggagaaaa tggagcacgg      5340
     cgtatctttc gattcttcag gagcggagca agtggcggtc atcgtctcca aacatcaagc      5400
     taggagcgct agtcatgatg aaggaggaaa cgctgccacc attaaggtgg ccgcttggcc      5460
     gcattgagag cgtcatccca ggaaaagatg gaaccatcag ggtagccgtc atccgcactc      5520
     aaagaggcct tttcaagagg gccgttggaa aaatagcggt tctgcccctt caggatggat      5580
     ctgttgaaag cctttgcctt ccaacggggg gtgaa                                 5615
//
ID   BEL-5_DPer-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.08, Created)
DT   01-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DPer_;
KW   BEL-5_DPer-I; BEL-5_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-371
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1476-1476 (2012).
XX
DR   [2] (Consensus)
XX
CC   BEL-5_DPer-LTR is >98% identical to TRAM_LTR.
XX
SQ   Sequence 371 BP; 83 A; 94 C; 81 G; 113 T; 0 other;
     tgttcggagc agaacccagc cgattagctg cttgccaaat agcacctaat tcttggccct        60
     cagccgctta ttttgtttgt tacttatgtc tatgtcactc atttgtttgt taaagctttg       120
     cgcttgcttg ccctgctaaa cgctctctgc cagctcgctc ttcgctatct ccgctttgcg       180
     tctgcctacc gacgtcggcc gagcgaagct gcgcttagcg atcggagcgg caatgtaaag       240
     ggcaggcaag ccacacttgc aatttggatg tcacgcatta aagaacatat cgcaatttta       300
     tttctgcgcc gagttttatt taattggaat aattagtcgg ccgattgggg ataaaaaaca       360
     ttatctccac a                                                            371
//
ID   BEL-5_DRh-I repbase;    DNA;    INV; 4982 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DRh_;
KW   BEL-5_DRh-LTR; BEL-5_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4982
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1555-1555 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4035-4613] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           735..4982
FT                 /product="BEL-5_DRh-I_1p"
FT                 /translation="MDTDSPTLEEFFKFLDSRCEELELSKRELATGSKTTT
FT                 HAEKPKRVTQSMVAVEGSGCTKCNSTEHTLYNCQLFLDMSGMQRRSFVKEK
FT                 SLCYNCLRPGHGVSKCKSTYKCRQCRGNHHSLLHVQANPQAIGNLAQIAGE
FT                 DERNIGASNNTSVTLSHFAQGEGTQSVVCAQGTAKSAQETEVKRSILPTAM
FT                 VYVQNAKGDHVTCRLLLDTGSELSYVSERCIQALGLTRSASRILVTGISSV
FT                 KADTTRGCSTLHIKSRISEDHLVVYAHVLGRITSSLERQNIDASALEAFKD
FT                 LQLADTEFNTNSPVDILLGSEHVWSVFTGRKMYDNKGNLIAISSVFGWVIT
FT                 SLITSNPSNAIALTTTVDIGATLQKFWELENVQSSAKLDPEDDQVEKHFLA
FT                 THSRDENGKYIVDLPFNTENPDFGETLQGALKRFKSVERRLQQNEQLRTQY
FT                 VYFMREYTNLGHMREVPPEENATGNQFYLPHHPVLGRKLRVVFDGSFRDAN
FT                 GKALNDTLFAVCLRFRMYKFAFSADIVKMFRQIWVNEKHRNFQKIVWREDP
FT                 SDPIKHFQLCTVTYGTSCAPFLAVRVLEQLAVDHQEEYPNASKILLEDFYV
FT                 DDVLTGSNSEDELLRNRNELIQLMSRANLELGKWVSNTPCIQTDDSDTQPA
FT                 QTSPVKVLGLYWHPGKDILTYNVGLAENPDCTKRQVPTKLADNWLKWRADL
FT                 DNLQTFQLPRFVANDPDNIELHGFSDASTKAYAAVVYSRVTNDDGSISVSI
FT                 VAAKTRVAPLKQQSLPRLELCAALLLSQLIRSITSGLRHKNITVFGWSDSS
FT                 IVLTWLSYTPAQLKTFVGNRTSEILDTIPRSAWRHVDSKTNPADCASRGLM
FT                 AADLIDFHLWWNGPLWLRDKVQYLVKLNDSRFGLSLTDKRIQGEVKSNCLA
FT                 TLAEATPVHPLDELTERVSSWIKLVHIVGYVKRFIQRTRNLSRERVSSALT
FT                 FDEIKEARILCIKQAQGCFKDDYQLLLGKKPLRNRSQLIKLAPIIDENDLL
FT                 RVGGRLHQSQLSNDAKHPVLLPKTHRISKLILEHEHRVNLHPGVSSLFVIV
FT                 RQKFRIFGARNLIRKITHDCLACFRQRYHTSQQQMADLPSVRITQALPFIY
FT                 TGCDYAGPILLKDAKVRKPRISKGYICLFVCMVTSAIHLELATDLTTETFL
FT                 AALRRFISVRGKCSKIYSDNGTNFIGAKRSLDEMQELLSSQTHKDTVSSTL
FT                 ADDGIQWVLIPPRAPHWGGKWESAVRCVKLHLRRITGNSTLTFEQMRTLLA
FT                 QISAVINSRPLCYTPDTETNYLSPAHFLIGRPLTTVPDPDLSHIPVGRLGY
FT                 WQSIQSMLQGFWRKWHQEYLTTLQQRPKWTTSTPNISTGDVVLVKESNSPP
FT                 ASWHIARVMETYPGKDNLVRAVKLKTPTGEMIRPITKVAVLPHSETVFQGG
FT                 PG"
XX
SQ   Sequence 4982 BP; 1418 A; 1232 C; 1161 G; 1167 T; 4 other;
     tatatctttt cggtttctgg caacgccgct aagacggcgt cgtattgcga aattcaattc        60
     agtgtcaaat aggcttcgca actggcaaga ataaaattaa tacagtccac acatacgcaa       120
     ctcaactcgt tcttatttct gaccatattg ttggtccttc gttccggatt cttggacagt       180
     tagtgaagtg ctttgattct caggttaatt gtttgctatg gaacaattaa aagcattggt       240
     gaaaagccgt tccaggctca agggcaacat cacacgttgt ctctcatggg ctgagcaagc       300
     ggaatctgca acacaggcgg agatctccac gcgcatacaa cttctccacg aagtttggaa       360
     ggagttcaac cagttcggcg attgcattgc tctccacgag gangtagaag gttacgtcga       420
     tccggagatc gataacgcga tttacgaaga aaagtaccta agggcgaacg caattctcaa       480
     ggacagaagt gatgctctac aaccgagtac atctacaggc attgtgaatg gcagcaacgg       540
     tctgcactcc aacggcgacg caattgtaaa tttgctacaa caaaaccaac aactatttga       600
     gcgactggct gcaaatcagg ctcattcgag cacgccggtt catgttggtg gtgacgtctc       660
     tttggcgaat tcaagttcgg tacatgcggn gaatacttga cgccgacacg cggcgtaggt       720
     ggattgagcg cagcatggac acagattccc ccactctcga ggaattcttc aaatttctgg       780
     attctcgttg cgaggaactg gaactgagta aaagggagct tgcgactggt agcaagacaa       840
     caacacatgc agaaaaacca aaaagggtca cacaatcgat ggttgcggtc gaaggcagtg       900
     gctgcaccaa atgtaattca acagaacaca ctctgtataa ctgtcagctg ttcttggata       960
     tgtctgggat gcagaggcga tccttcgtaa aggagaaatc actgtgctac aactgcttgc      1020
     gacctggtca tggagtcagc aagtgcaagt cgacatacaa atgtaggcaa tgcaggggaa      1080
     atcatcactc ccttctacat gtccaagcga atccacaggc tattgggaat cttgcccaga      1140
     tagcagggga ggacgagcga aacataggcg cgtccaacaa cacttcggtg actctcagtc      1200
     atttcgccca aggagagggc actcaatcgg ttgtatgtgc acagggcact gcaaaatctg      1260
     cacaggaaac ggaagttaag cgaagcatat taccaactgc catggtttat gttcaaaacg      1320
     caaaaggtga ccacgtaaca tgccgtctct tattggacac aggctcagag ctttcgtacg      1380
     tatccgagcg ttgcattcaa gctctcggat tgacacgttc ggcatcacgc atcttggtta      1440
     cgggaatctc ttcggtgaaa gcagacacga caaggggatg cagcaccttg catatcaagt      1500
     cccgtatctc cgaggatcat ttggttgtct acgcccacgt gctaggcaga attacttctt      1560
     cgctggaacg ccaaaacatc gatgcatcgg cactcgaggc attcaaggat ctgcagttgg      1620
     cggatacaga attcaacaca aactcacctg ttgacattct attgggaagc gaacacgtat      1680
     ggtcggtgtt tacaggacga aagatgtacg acaacaaggg taatcttatc gccatttctt      1740
     cggtgttcgg atgggtaata acctcactca tcacatcgaa tccaagcaac gctattgcac      1800
     tgactacaac agtagacata ggcgccacgc ttcagaagtt ttgggaattg gaaaacgttc      1860
     aaagcagcgc aaaattggat ccggaggatg atcaggtcga gaagcacttt ctcgccactc      1920
     acagtcgcga tgaaaacggg aagtatatcg tggatcttcc attcaacact gaaaaccccg      1980
     atttcggaga aactctacaa ggagcgctca aacgctttaa atcggttgag cggcggctgc      2040
     aacagaacga gcagctgcgt acacagtacg tatactttat gcgggaatac acaaatctgg      2100
     ggcacatgcg agaggtgcca cctgaggaaa acgctactgg aaatcagttt tatctaccac      2160
     accacccagt gctgggtcgg aagctacgag tagttttcga tggatcnttt cgcgacgcca      2220
     atggtaaggc tttaaatgac accctgttcg ctgtgtgcct tcgttttcga atgtacaaat      2280
     ttgcattctc agcggatatc gtaaaaatgt tccgccagat atgggtcaac gaaaagcaca      2340
     gaaacttcca gaaaatcgtt tggagagaag atccatccga tcccatcaag catttccaat      2400
     tgtgcaccgt aacctacgga acttcatgcg caccattcct ggcggtgcga gtgctggaac      2460
     aacttgctgt cgatcatcaa gaggaatacc caaatgcgtc gaaaatcctg ctggaggatt      2520
     tctatgtaga tgacgttctt actgggtcaa acagtgagga tgagctactt cgaaaccgaa      2580
     acgagctgat tcagctgatg tctcgcgcaa accttgaact cgggaaatgg gtatccaata      2640
     caccatgtat acaaacggat gatagcgaca cacaacctgc acaaacgtca ccagtaaagg      2700
     ttctcggact gtactggcat cctggaaaag acattctaac gtacaatgtc ggtctagctg      2760
     aaaatcctga ttgcacaaag agacaagtcc caactaaact ggcggacaac tggctaaagt      2820
     ggagagcaga tctggacaat cttcaaacat tccaactacc acgatttgtc gccaacgacc      2880
     cggacaacat cgaactccac ggattttcgg atgcgtcaac caaggcatat gctgctgtgg      2940
     tgtacagcag agtcacgaat gacgatggct ccatctcggt atccattgtg gctgcgaaaa      3000
     caagggtggc tccactgaaa caacaatcct tgccacgtct ggaactttgc gcagcacttc      3060
     tcctcagcca actgattcgc tcgatcacat ctggattgcg ccacaaaaac ataactgttt      3120
     ttggctggtc cgactcatca atagtgctca cctggttatc gtatacgcca gcccaactca      3180
     agacatttgt tggaaacaga acctcggaaa tccttgacac tattccaagg agtgcttggc      3240
     gtcacgtaga ttccaaaaca aacccagcng actgtgcgtc caggggactg atggctgctg      3300
     atctcatcga cttccatttg tggtggaatg ggcctttatg gctacgggac aaggtgcagt      3360
     atctggtaaa gttaaacgac tcacgtttcg gtttatctct tacagacaaa cgcattcaag      3420
     gagaagtcaa atccaactgt ttggctacac tggctgaagc aaccccggtt catccacttg      3480
     atgaactaac cgagcgagtg tcttcttgga tcaagctcgt ccacattgtc ggctacgtga      3540
     agcggtttat tcaacgtaca cgaaacctat ctcgcgaaag ggtatctagc gctctcacat      3600
     ttgacgagat taaggaggca aggattctgt gcataaaaca agcacaaggt tgtttcaaag      3660
     acgattacca attgctcctc ggtaaaaaac ccttaaggaa ccgatcacag ctgatcaaac      3720
     tggcacccat aatcgacgaa aacgatttgc tgagggtagg cggacgactg caccaatcgc      3780
     agttgtcaaa cgatgcaaaa cacccagtat tgctaccaaa aacacaccgc atctcaaagc      3840
     tgattctgga acacgagcac cgagtgaacc tccaccctgg cgtttcctca ctttttgtta      3900
     ttgttcggca aaaattccgg atatttggag cacgtaatct aattcgcaaa ataacacacg      3960
     actgtttagc ttgctttcgt caacgctacc acacatccca gcaacaaatg gctgatttac      4020
     ccagcgtacg cattacacaa gcgcttccat ttatatatac tggttgcgac tatgcaggtc      4080
     caatacttct gaaggatgca aaggttcgga agccacgtat cagcaagggc tacatatgcc      4140
     tatttgtttg catggtcacc tcggccatcc acctggaact tgccacagat ttgacgacag      4200
     aaaccttctt ggctgccttg cggcgcttta tatcggtacg tggcaagtgc agtaagatct      4260
     acagtgacaa tggcacaaac tttattggag ctaagcgatc cctcgacgag atgcaagaat      4320
     tgctttcttc acagacacac aaggacaccg tgtctagcac actagcggat gatggtatcc      4380
     aatgggtact tattcccccg agagcccctc actggggagg gaaatgggag tcggcagttc      4440
     gttgtgtcaa gctgcatctt cgcagaatta ccggaaactc aacgctcacc tttgaacaga      4500
     tgcgcacact tcttgctcaa ataagcgcag tgataaattc acgccccttg tgctacacac      4560
     cggatacgga aaccaactac ctatcacccg ctcacttctt aattgggcga ccattaacaa      4620
     cagtgccaga tcccgatttg agtcacatcc cagtgggccg attaggatat tggcaaagca      4680
     tccagtctat gcttcaagga ttctggagaa aatggcatca ggagtatctg actactctgc      4740
     agcaacgtcc aaaatggact acttcaacac ccaacatctc gaccggtgat gttgtgctcg      4800
     taaaagagtc caattcacca ccggcatctt ggcacatcgc tcgggttatg gaaacctatc      4860
     cagggaagga caacctcgtt cgagcagtca aattgaagac cccgacagga gagatgatca      4920
     gacccatcac gaaagttgct gtattgcccc attcagaaac tgtgtttcag ggcgggccgg      4980
     ga                                                                     4982
//
ID   BEL-5_DRh-LTR repbase;    DNA;    INV; 106 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DRh_;
KW   BEL-5_DRh-I; BEL-5_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-106
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1556-1556 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 106 BP; 34 A; 20 C; 13 G; 39 T; 0 other;
     tgttcgtgaa cgcttgcagc tttaatcatc tctaatatat aggcgcataa tgccatctct        60
     attctattct atatatttaa tctatgtaca agaaaacatg tataca                      106
//
ID   BEL-5_DSer-I repbase;    DNA;    INV; 6488 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6488
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2002-2002 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1308..6458
FT                 /product="BEL-5_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase
FT                 and ribonuclease H, and integrase."
FT                 /translation="MSQDTKNKSLLEELKSKLQNRVRTIRRLNERLEQGSI
FT                 PILEEELKCRLENLNASINKANQIQEQIEEIDSGDEYGDELEELSIVTKAK
FT                 LMSLLSAIKTAASSETPGSAAAAPTRARLPNLALPKFSGNYSEFKNFISLF
FT                 ETLVHKDASIPVIEKFNHLISCLSGEALGTIKAYQVTESNYEKAMASLKKV
FT                 YDNECLIFMNNISTLFSLPKISHQSASSLRNLIDTVSSIYGSLLSIGDDTK
FT                 ISNAMLIYLVLNRVDPVTKQKWEEQLDYETLPLWSDCEKMLNRRYQHLSAE
FT                 ESTKPKLEKLPSSKPHNRSSFSCSSSNSKPQQTCSYCNAEDHSLQNCSPFG
FT                 RLSVMQRFEFVKSASLCINCLRKGHTVSKCKGKKCRACDRSHHILLHRYTV
FT                 PDKSLALPPLQENISPPFNQEQPSTSHVMHATSLDRVILATSIVSVRTKSG
FT                 EYVLARALLDSGSQTNFITEKLANRLQIRREESCINLLGIGESNSQVKKKI
FT                 HTVVKSRINGSEFSFDFWILKSITGYHPDQSVNVSDWKIPKNLPLADPYFY
FT                 KSQKIDMLIGAESFFELLAVGQIKQGPDYPTLQKTLLGWVVSGRYKSAAPK
FT                 QVVNSFSCSEESLVSIDTTLQKFWSLEEMPNPKKILSPEHKLCEEYYRKTT
FT                 QVLPSGRFEVRLPFKSDPKGLGNSFDVAKRRFLSLERRLSRDPDLKTMYLE
FT                 FMEEYLALGHMSPTDNKIPSTPHYVIPHQCVLRPQSTSTKLRVVFDASCKT
FT                 STQVALNDILMVGPTIQEELYSTLLRFRLHRYALTADVKKMYRQVMVNEAD
FT                 RQFQLIVWRRDPSESLRLYKLNTVTYGTGPAPFLAIRCLKRLSESAKLSFP
FT                 RAADVIGSDFYVDDMLTGAACVEELRTIKSEVSQVLQTAGFELTKWFSNSP
FT                 EVTASESTVKSIPISDSESTKALGISWLPSEDAFKFKIDDSVMGLRATKRN
FT                 ILSVTSKLFDPLGLLSPIVIKGKILLQELWLKKLDWDESIPLNLETAWNML
FT                 KNTLSQLDKIAIPRFVHTDPMSPVQLHAFADASMRAYGACVYVRSKSAEGY
FT                 KISLLTSKSKVAPLKTKTLPRLELCAAHLLADLCQRIKPLINVPIERIVYW
FT                 SDSEVTLHWIRSHPSSLSTFVSNRVAEIQEWSGQATWRHVPTKQNPADIVS
FT                 RGCDVDEIGQSIWFTGPQFLKDEEENWPKNVHFEPDEEVLRQESRKTVVGL
FT                 TAAVQTSDLLDVIEGFSSHLKLLRVFAYMFRFIRKCKDKSIVFEKTLSPTE
FT                 YTEAFNKIVEIIQNHEYQVEIVKIRKGSKVGPSLQRLNPFIHEDTGTWCNF
FT                 SLLRVGGRLANAPISYDAKFPLLLTKRSQFVQSYVRHLHHTNFHVGPRALV
FT                 SILRQRIWTINAQELCSQTVRSCVRCFKYKPRLMTQIMGNLPAERLRALRP
FT                 FAICGVDFCGPVYTTLKIRGRPPYKSYIALFVCFASKAVHLEIVSDLSTDS
FT                 FLLAFQRFIGRRGCPQTVHCDNATNFVGASRHFQALRERLEEQADAIREFA
FT                 SKSGCEFAFTPPRAPHMGGLWEAGVKTAKHLLLRAVGGALLNAEELGTVLV
FT                 GIEAIMNSRPLGALSQDPSDGEALTPGHLLTGGPLVAAPALRTPDQAGLSC
FT                 LRRWRLVSSAKQMFWRRWSREYVLGLQIRGKWHHDQENVKEGQLVIVAEDN
FT                 LPPQQWLLGRIVATHAGEDGMVRVVDLRRSDGAIFRRAIHKLAPLPGG"
XX
SQ   Sequence 6488 BP; 1871 A; 1401 C; 1443 G; 1767 T; 6 other;
     tggcgccccc gggtggacta gacaaaaaaa ggcaacataa ttaaataatt aataatagtg        60
     acagtgacac aatatatata tatatacata taaatacata matatatata aaatatatga       120
     aaaaaataca taagtgcagt tgaacaagcc agtgactagt gcttgwggaa wttgttgccc       180
     gcgacgcgct gtgtkaaata aatttaatta aataatttaa ataaattaac cgtgtcggtc       240
     ggaaaagaaa aaactctgct gckccaacta ctgccatcaa cgagggagca agaagcacag       300
     gaaagtggca gctggaatat atttatatat atatatcacc aagcagaggt atttgtgcaa       360
     aaaattgaaa gctggagtaa aataaattta ttgtttattg tcttgtgctg aaatattgca       420
     cctcgctttc aattcttggc acatacgtat ttatagtaga gcaacattgc atgtatttat       480
     tcaattatat atattgtcta aaattaacat atacatacat acataaaatt gaaccgcact       540
     tggacgcaac atttatttat gttatttatt gtattatatt gcaatcactg tcgccccccc       600
     tctctcgtta gaactcgctt taatagttgg gaagttaatc caagcttgcg caccaataca       660
     taaagcctta tatactagca gctgcagcgg tgaacttttt cgttttcgct ttcgcttgtg       720
     tgccggtgta gtcgttgttg ttgttgggct cttttagttt ggcgcgctta gattagcgga       780
     ccgccaagtg acgcgctacc ctgtttttgt cgggtatact ctttttcggt catttgattg       840
     gcagaccgcc aagtgacgcg ctaccctgtt tttgtcgggt atactctttt tcggtcattt       900
     gattggcgga ccgccaagtg acgcgctacc ctgtttttgt cgggtataca cttttcggcg       960
     tcacttgcac ccactattat tattgatact gcgtgactcg tttcaattaa ataaattatt      1020
     gtcatcagaa aaaatattta atagactttt cgaacaaaat aaaaatatta atttgtaata      1080
     ttaattaatt aattattaat attaaatatt tattaaatta aaaagaatat ttatatatat      1140
     atatattttt attattttta attgagtgtt tatttgatat tattttgata ttatttatat      1200
     tagattcgaa agctataatt aatactttcg tcgtctttct gctttaaaca ataattttcg      1260
     gccattatta tcattcttgg gaaaattaat ttaattaatt cgtaaaaatg agccaggaca      1320
     caaagaataa atctcttctg gaggagttaa aaagcaagct ccaaaatagg gtcagaacca      1380
     ttcgccgatt aaacgagcgg ctggaacagg gttcgattcc gattttagaa gaagaattga      1440
     aatgtcgact cgaaaactta aatgcttcaa ttaacaaggc aaatcaaatc caagaacaga      1500
     tagaagaaat agatagtggc gatgaatatg gcgacgagtt ggaagaactt agcatcgtga      1560
     ccaaggcaaa attgatgtcw ttattatctg ccattaagac agcagccagc agcgaaactc      1620
     cgggatcagc tgcggcagca ccaactcgtg cgcgacttcc gaatttggca ttgccaaaat      1680
     ttagtggaaa ttattcggaa tttaaaaatt ttattagcct cttcgaaact ttggttcata      1740
     aagatgccag cattccagtt atcgaaaaat ttaaccactt aatttcatgt ctctctggtg      1800
     aagctttagg aacaattaaa gcttaccaag tcaccgagag taattacgaa aaggcgatgg      1860
     ccagtttaaa aaaggtttac gataacgaat gcctcatctt tatgaataat atttcaacat      1920
     tgtttagtct tccaaaaata tcgcatcaat ccgcatcctc cttgagaaat cttatcgaca      1980
     ctgtttcgtc gatttacggt tctctgctat cgataggaga tgatacaaaa atttcaaacg      2040
     caatgttgat atatttggta ttaaatagag tcgacccagt gaccaaacaa aaatgggagg      2100
     aacagctcga ttatgagaca ttgccacttt ggtccgattg tgaaaaaatg ttaaatcgcc      2160
     gataccagca tttatcggct gaagaatcaa caaaaccaaa gctggaaaaa ttaccgtcaa      2220
     gcaaaccaca taatcgaagc tcattttcgt gttcctcctc caacagcaag cctcagcaaa      2280
     cttgtagcta ttgcaatgca gaagatcatt cactacagaa ttgcagcccg tttgggcgtc      2340
     tctctgtaat gcaaaggttc gagtttgtta agtcagcctc cttatgcatc aattgtctgc      2400
     gaaaaggcca tactgtgtca aaatgcaagg gaaaaaagtg tagagcttgt gaccgctcac      2460
     atcacattct gctccacaga tacacagtgc ctgataaaag tttagcgttg ccaccccttc      2520
     aagagaatat ttctcctcct tttaaccaag agcagccttc cacgtcacat gttatgcatg      2580
     ctacgtcatt ggacagggta atcttggcta cgtcaatcgt aagcgtgcgc accaaaagcg      2640
     gcgaatacgt tttagcccga gcacttctgg actctgggtc tcaaacgaat ttcataacag      2700
     aaaaattagc gaaccgctta cagattcgta gagaggagtc gtgtatcaac ttacttggta      2760
     ttggcgaatc caattctcaa gtcaagaaaa agatacacac cgtggtgaag tcacgaatca      2820
     atgggagtga gttctcgttc gatttctgga ttttaaaatc gatcaccggt tatcaccccg      2880
     atcaatcggt gaacgttagc gattggaaga tcccaaagaa cctcccatta gcagacccct      2940
     acttttacaa gtctcaaaaa attgatatgc taatcggagc cgaatcattt ttcgaattgc      3000
     tggctgttgg tcaaattaaa caaggtcctg actatccaac tcttcaaaag acccttcttg      3060
     gttgggttgt ctcggggaga tataaatctg cagccccgaa gcaagttgtg aatagtttca      3120
     gttgtagtga agaatcgtta gtgtcgattg acaccacgct acagaaattt tggtcactgg      3180
     aggaaatgcc aaatccaaag aaaattctgt cgcctgagca caaattatgt gaagagtact      3240
     acaggaagac tactcaggta ttgccatcag gtcggtttga agtaaggctg ccgtttaaat      3300
     ctgaccctaa ggggttaggc aattcttttg atgttgcaaa acggcggttt ttgtcgcttg      3360
     agagaaggtt gtctcgagat cctgacttaa agaccatgta tttggaattt atggaagaat      3420
     atctcgcctt aggtcatatg tcgcctacag acaacaaaat tccttccact ccacattatg      3480
     tcattcccca tcaatgtgtg ttgaggcccc agagtacgtc aacaaagttg cgcgttgttt      3540
     tcgatgcatc gtgcaaaaca tcgactcagg tggccttaaa tgacatcttg atggtgggac      3600
     cgacaatcca agaagagttg tactccactc tactccgctt ccggctgcac aggtatgccc      3660
     tgactgccga tgtaaaaaag atgtatcgcc aagtgatggt taacgaagcg gataggcagt      3720
     ttcaactcat agtgtggaga agagacccct ctgaatcctt gagattatac aagctcaaca      3780
     ccgttacata tggtactgga ccagcccctt ttcttgctat tcggtgttta aaaaggttga      3840
     gtgaatctgc gaaactttca ttccctagag ctgccgacgt aattggatcc gatttttacg      3900
     tcgatgacat gctaactggt gctgcatgcg tagaggagct acggacaatc aagtctgaag      3960
     tgtctcaggt tcttcaaaca gcaggttttg aattgacaaa gtggttttca aactcacctg      4020
     aggtcactgc atctgagagc acagttaagt cgatacctat ctcggactca gagtcaacta      4080
     aggcgttagg aatatcttgg ttgcctagcg aagatgcctt caaatttaaa attgacgatt      4140
     ctgtcatggg tctccgagcg acaaaacgga acattttatc ggtgacatcc aagctgtttg      4200
     accccctcgg cttattaagt cccattgtaa taaaaggaaa gatcctactg caggaactgt      4260
     ggcttaagaa gttagactgg gatgagtcaa ttccgctgaa tttagaaact gcatggaata      4320
     tgctaaaaaa caccttgtcg caattggata agatagctat tcctcggttt gtgcatactg      4380
     atccgatgtc accggtgcaa ttacatgcct ttgccgacgc atccatgaga gcttatggag      4440
     cttgcgtcta cgttcgtagc aaatctgctg aaggttacaa aatatcgttg ttgacttcaa      4500
     agtcgaaagt agcgccgctc aagacaaaaa cgctcccaag gcttgagtta tgtgccgctc      4560
     accttctcgc agatctctgc cagagaatca aaccgctaat aaatgtccct atcgagcgaa      4620
     tcgtttactg gtcggattcg gaagtcactc tccattggat ccgatctcat ccatcgtcgt      4680
     tgtcgacatt cgtttcgaac agggttgcgg agattcaaga atggtcagga caggctacat      4740
     ggcggcatgt tccaacgaag cagaacccag cagatatagt gtctagaggt tgtgacgtcg      4800
     acgaaattgg acagtcgatc tggttcacgg ggcctcaatt tctgaaggac gaggaggaga      4860
     actggcccaa aaatgttcat ttcgaaccgg atgaggaagt cttgcggcag gaatcaagaa      4920
     agactgtggt cggactgacc gctgcggtgc aaacttccga tttgctggac gtcatcgagg      4980
     gattctcgtc acacctgaaa ctgctgagag tgttcgctta tatgttccgc tttataagaa      5040
     aatgtaaaga caagagtata gttttcgaaa aaactctgtc accgactgaa tatactgaag      5100
     catttaataa gatcgtcgaa ataattcaga atcacgagta tcaagtagaa atagtaaaaa      5160
     ttcgtaaagg ttccaaggtc ggcccaagtc ttcagcgatt gaacccattc atccatgaag      5220
     acaccggcac ttggtgcaat ttttcgttgt tgcgagttgg ggggcgacta gcaaacgctc      5280
     ctatatccta cgatgccaag tttcccttgc tgttgacgaa acgctcccaa tttgtgcaga      5340
     gctacgtccg gcatctgcac cacacaaatt ttcatgtcgg tcctcgagca cttgtgagca      5400
     tcctacgaca gcgtatttgg accataaacg ctcaggaact ctgcagtcag acagttcgat      5460
     catgtgtgcg ctgttttaaa tacaagcccc gactgatgac tcaaattatg ggaaatcttc      5520
     ccgcagaaag actccgtgct ctccgcccat ttgcaatatg tggcgttgat ttttgtggcc      5580
     ctgtttatac gacattgaaa atacgaggaa ggcccccata taagtcctac attgccttat      5640
     ttgtttgttt tgcgtccaag gcggttcatt tagaaattgt ttcagaccta agtactgact      5700
     cttttttatt ggcttttcaa aggtttattg gtcgccgagg atgtccccag accgtgcatt      5760
     gcgacaacgc gacgaacttc gtcggagcga gtcgccactt ccaggctctt cgcgagaggc      5820
     tcgaggagca ggcggacgcg attcgcgaat tcgcatcaaa aagcggatgc gaatttgcgt      5880
     tcacaccccc tcgggctccg cacatgggcg gactatggga ggcaggtgtg aaaactgcca      5940
     agcacctact cctacgagcg gtgggcggcg cactcctcaa cgcagaagag ctggggacag      6000
     tcctcgtcgg aatcgaggcc ataatgaact cgcggcccct cggagctctc agccaggacc      6060
     caagcgacgg agaggcactc actccaggac acctgctgac aggcgggccc ctcgtcgcag      6120
     caccagcact gcggaccccg gaccaggcgg gtctcagctg cttgcggcga tggcggcttg      6180
     tctcgtcagc caagcaaatg ttttggcggc gatggtcccg ggagtatgtg ctgggccttc      6240
     aaatacgagg caagtggcac cacgaccagg agaacgtcaa ggagggacag ctcgtcatag      6300
     tggcagagga caacctgccg cctcaacagt ggctcctcgg acggatcgtc gcgacgcacg      6360
     caggggagga cggcatggtc agggtcgtcg accttagacg gagcgatgga gccatcttcc      6420
     gaagggcgat ccacaagctg gcgccgcttc caggaggttg aagccgtgga ggcgttcaac      6480
     ggggccgg                                                               6488
//
ID   BEL-5_DSer-LTR repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-271
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2011-2011 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 271 BP; 75 A; 58 C; 51 G; 87 T; 0 other;
     tgttggctga attcacaatt ttgaagtcta gtgtagttag tttagggcga aggcgagagc        60
     gcaataaagc tctctcgcgc tcttcgcgaa ttcgcctcgc cttcgccaac cttagataag       120
     ctaggctaag catatgaaat agatgattcg catgttaaac tcgaagcgac gcaccactct       180
     ttttttcgtt cgccaaaagt ctgccaccac aactcggttt ttttcgtaat ttaatttttt       240
     aatgtttcta ataaactaat tagaaaattc a                                      271
//
ID   BEL-5_DTa-I repbase;    DNA;    INV; 5871 BP.
XX
AC   AFFI01006046;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DTa_;
KW   BEL-5_DTa-LTR; BEL-5_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5871
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006046; Positions   20590   26460.
XX
CC   Positions [4899-5480] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4782..5834
FT                 /product="BEL-5_DTa-I_3p"
FT                 /translation="MDCQRQSSNSSGRPELHALFSLQAKTYTTNYGDLPPD
FT                 RLHAERPFSIAGVDFCGPFQTCYKIRGKRPYKTYASIFICFATKAVHIEVV
FT                 SELSTNAFLLCLRRFIGRRGLPSKLYCDNATNFCGAARKMDEFKQQFFSTE
FT                 VIDDLHSFSAVKGFDFNFIPPRAPHFGGLWEAAVKSAKTLLLKNISEANLT
FT                 YEELETTFAEIEAILNSRPIAPQSDDPNDGIALTPAHFLVGSSLLAAPDEC
FT                 IFKPQSTTQLSYLDRWQRVTFLKQQFWSMWQRDYIHTLQRRGKWNTQQANI
FT                 KPGQLVIIHEDNTPPQHWILARVVSAIPGKDGKVRVVDLQTSKNVLQRPIH
FT                 KIAPLPME"
FT   CDS           join(552..3056,3060..4196)
FT                 /product="BEL-5_DTa-I_1p"
FT                 /translation="MDKAEASIPNEAGPSQVEVNDAKLVKLRVQRTTIERN
FT                 IKNLKGRVLTLGASVEPTVLECNLQIVENYFRTLCQIQSNIEEIYCIDTGR
FT                 AQVEEIFIDAKSTITQLINKKRKTSLVGDDPSFLNSTGNTTHHSRLPNIKL
FT                 PSFDGTYSQYKRFISAFSNLVDQDSGIATIDKFNCLLNCLAGPALEVVQPF
FT                 QITEQNYPKALTQLKARYDNDVLIFLDYISSFFTLSTLKKPDASQLQRLIH
FT                 SAAAIRGSLLSLGSAEDVMNAIFIHILLSKVDSDTKLYYDEKLTFEALPSW
FT                 ETCCKLLTHRCQFLESRSKGKELADSHESNHKQKPTQTSKAYITTSAKCEY
FT                 CRASDHYISNCQTFSVLLLDLRRDWVRKRGLCLNCLRPNHNKKQCQSKSRC
FT                 KICRSAHHSLLHNFSPGVSTQSSDQVHRTGESPPSTVQPHLSLVVRAAKLG
FT                 ILPTAVVQVKDKLGELHYIRAMLDSCSEVNLITEETAKLLNLEKFKVSQEV
FT                 CGISDTCQPIKYNVIATLKSRLSEFEWTSTFAVINSICTHQPSSTIGIQDW
FT                 KLPTNVNLADPHLFQSTKVHMLISTEGFFEALKNGKHSLGFGKPSLISTEF
FT                 GWVVGGNITSAPTVFKAFHCTLHENRADTDTILDRFWKIEEYCTSPPTFTD
FT                 EEQACEDHFIQNVSILVDGRIQVRLPFSNSSAGLGNSFNMAQNRFSMLERR
FT                 LNRCPELKEGYVNFMKEYEALGHMSPLQSFDSNMRHFFIPHHCVHRPQSLS
FT                 TKLRVVFDGSAKSTSGKSLNDLLLCGPTIQQDLITTVLAFRLHRFVLTGDI
FT                 TKMYRQFMIDPRDRLFQLILWRENPTDPMKVYQNTVTYGLSSAPFLAIRSL
FT                 QYLASESRSEFPAGASVLCNDLHVDDLLTGADTVEELLEKKRQVVQILRKG
FT                 NMSMSKFNSNSHIIGGLSATEVAIKFEEEEITKALGLSWQPQKDYFVYRYD
FT                 LSSDNTFTKRIVLSTIASLFDALGLLSPVTIRCKILLQDLHILKLGWDEPL
FT                 PDTQNELWSDLRNDLKDTPKLKFPRYMHTSPSEPCEVHGFADASERAYGCC
FT                 IYIRVKLGNTVHTNLLIGKSKVAPITVISLPKLELCAAVLLNATFRKFQNK
FT                 LSPHVNKIYFWTDSKIVLQWMTMHASKLNCFVANRVSELQQHSADVEWRHV
FT                 PSAKNPADIVSRGCRTSDLLTNTWLTGPEFLKLPSEECRVSVFPHHHLSKY
FT                 EKEH"
XX
SQ   Sequence 5871 BP; 1770 A; 1375 C; 1195 G; 1531 T; 0 other;
     ttttggcgac cgtgacagga cagctctaaa ggataagtca cacgcgcaag tacgattgcg        60
     gatctctcat cgggtcaata tagaactgca attcaagcac acatcggcca gggcttcgct       120
     gaccaattca acgaacgcaa attggtcaga gcctcactgg acatctcgga aagtcaacca       180
     gggcttcgtt ggagcaactc atcattagca gttggccaaa gcctcgctgg tggattccac       240
     ctcggtcaac cacaacctca cttctgcgga tcacatttcg gcaaacataa ccacacttcg       300
     agacacgcag ctttcacaca cttacacatc gcaagtacac acacatatct aagtaacctg       360
     tacccatata catgtagaac atatacaaaa ttataaagat tgttgcgcca agtagctatt       420
     tctatgaaag gctgagattc ttgctgttgc ccattttatc ttcagttcag ttgcaggtgc       480
     ctccgctagg ggtcgaacat acgtttcaat taaactagtc agttctcgat cttgagtgta       540
     cgcattgaac aatggataag gctgaggcaa gcattcccaa cgaagcaggt ccatcccaag       600
     tagaagtcaa tgacgcaaaa cttgttaaat tacgagttca gcggacaacg atagagcgca       660
     atatcaagaa tcttaaaggt cgtgttctca ctcttggggc atccgttgaa cccacagtgc       720
     tggagtgcaa tttgcaaata gttgaaaatt actttcgtac attatgtcag attcagtcaa       780
     acatcgagga aatttactgc atcgacacgg ggagggcgca agtggaggaa atcttcattg       840
     atgcaaaatc aacaattaca cagctcataa ataagaagcg taaaaccagc ctcgttggag       900
     acgatccaag ttttctgaac tccactggca acacaacgca ccacagccga ttacctaaca       960
     tcaagttgcc cagtttcgat gggacttatt ctcaatacaa acggttcatc agcgcgttct      1020
     ccaaccttgt tgatcaggat tcaggaatcg ccaccattga taaatttaac tgtctcctca      1080
     attgtctggc tggcccagct ttagaagttg ttcaaccttt tcaaatcact gaacaaaact      1140
     acccaaaagc cctaacccag ttgaaggcac gatatgataa tgatgtatta atttttttgg      1200
     actacatttc tagttttttc actttatcca cattaaagaa accagatgca tcacagcttc      1260
     aaagacttat acattcagcc gcagctataa gaggttctct actgtcatta gggtcagcag      1320
     aagatgtgat gaacgcaatt tttattcaca ttctactctc caaggtcgat tctgatacca      1380
     aactgtatta cgatgaaaaa ctgacgtttg aggctttgcc atcatgggaa acctgctgca      1440
     aactcttaac tcataggtgc caattcttgg agagccgttc caaagggaag gaactagcag      1500
     actcgcacga gtcaaatcat aaacaaaagc ctactcaaac atcgaaggct tacatcacaa      1560
     ccagtgcaaa atgcgaatat tgcagggcat ccgatcacta catatcgaat tgtcaaacgt      1620
     tttccgttct tcttttggac ctgcgaagag attgggtcag gaaacgggga ctttgtttaa      1680
     actgcttgcg tcctaatcac aacaaaaagc agtgtcagtc gaaatcgcgc tgtaaaattt      1740
     gtcgctccgc tcatcattca cttcttcaca acttttcgcc tggagtttca acacaatcca      1800
     gcgatcaggt ccatcgcacg ggagaatcgc ctccgtcaac ggtgcagcca cacctttcat      1860
     tagtggtgcg agcagctaaa ctcggtatac ttcccacagc agtggtccaa gtcaaggaca      1920
     aactcgggga acttcattat attcgcgcca tgcttgactc ctgttctgaa gtcaatctga      1980
     tcactgaaga aacagccaag cttttgaatt tggaaaaatt caaggtatct caagaagttt      2040
     gcggaatttc agatacgtgt caacccatta agtataacgt tatagcgaca ctaaaatcac      2100
     gcctttctga atttgaatgg acttccacgt ttgcggtaat aaattcaata tgcacgcacc      2160
     aacctagcag caccattgga attcaagatt ggaagctacc aactaatgtc aatctagccg      2220
     acccgcacct tttccagtcg accaaggtgc atatgcttat cagtaccgaa gggtttttcg      2280
     aagcattaaa aaatggaaag cattctcttg ggtttggcaa gcctagttta atcagtacag      2340
     aattcggttg ggtagtagga gggaatatca catcagctcc aacagtgttt aaagcctttc      2400
     attgcacact tcacgaaaat cgcgcggaca ccgacacaat tttagatcgt ttttggaaaa      2460
     tcgaagagta ttgtacctct cctcctacat ttacggatga agagcaagcg tgtgaagatc      2520
     atttcataca aaacgtatcc attttagtcg acggacggat tcaagtgcgc cttccattca      2580
     gcaattcaag tgcaggtttg ggtaattcat tcaacatggc tcagaatcgt ttctcaatgc      2640
     ttgagcgaag acttaaccgc tgtcccgaat taaaggaagg ctacgtaaac tttatgaaag      2700
     agtacgaggc tttggggcat atgtcgcctc ttcaatcatt cgattccaac atgcgacact      2760
     tttttattcc gcatcattgc gtacatagac cccaaagcct atcgaccaaa cttcgcgttg      2820
     tcttcgacgg atcagcaaaa tcaacctcgg gcaaatcact aaacgatctt ttactctgcg      2880
     gaccgacaat tcagcaggat ctcatcacca cagttttagc ttttagacta caccggttcg      2940
     ttctcaccgg tgatatcact aaaatgtatc gccaattcat gatcgatccc cgtgaccgat      3000
     tattccagct aatcctgtgg agggaaaacc caacagatcc aatgaaagta taccaataaa      3060
     acaccgtgac atacggccta tcatcagctc cgtttttagc tatccgaagt ttacaatatt      3120
     tagcaagcga atcaaggtca gaatttcccg caggagcttc agttttgtgc aacgatcttc      3180
     acgtagacga cctcctgaca ggtgctgata cggtagaaga attactggaa aagaaaagac      3240
     aggtcgtaca aatattgagg aagggaaaca tgagcatgtc gaagttcaac agcaactcgc      3300
     acatcatcgg aggcttatca gcaacggaag tcgccatcaa gtttgaagaa gaagaaatca      3360
     ccaaagccct tggattgtcg tggcagcctc aaaaggacta cttcgtatac agatacgact      3420
     tatcgtcaga caacacgttt actaagcgaa ttgttttgtc tactatcgca agtctctttg      3480
     acgcactagg attactcagt cccgtaacca tacgatgtaa aatcctgttg caagacctgc      3540
     acattctcaa acttggatgg gacgagccac tcccggatac acaaaatgaa ttgtggagtg      3600
     atttaagaaa cgatttgaaa gatacaccca aactgaaatt tcctcgatac atgcacacgt      3660
     ctccgtcaga gccgtgcgaa gttcatggat tcgcggacgc atccgagcga gcttatggct      3720
     gctgtatata cattcgagta aaattaggaa atacagttca cacaaattta cttatcggaa      3780
     aatccaaagt agctcctatt accgttatat ctctaccaaa gctagaatta tgtgcagcag      3840
     tcctgctaaa tgcaacgttt cgaaaatttc agaataagct ctctccacac gtcaacaaga      3900
     tttacttctg gacggactca aagatcgttc ttcaatggat gacgatgcat gcttcaaaac      3960
     tgaactgttt tgtagcaaac agagtttcag agctgcagca gcacagcgca gatgtcgaat      4020
     ggagacatgt accgtcagca aagaaccccg cggacattgt ttcgagaggt tgtcgcactt      4080
     ctgacctgtt aactaacact tggttaaccg gcccagaatt tttgaaactg ccatccgagg      4140
     aatgccgagt ctctgtattt ccgcaccatc atctatcgaa gtacgaaaaa gagcactagt      4200
     catatgcaac gaaccatcta cctgccatgt agggacgtca gttgggagtc aaaaagttaa      4260
     cgttgatggc tctaaggaac aggtaaattc aaaatctgat gttttagatt cgatcataga      4320
     ctacgtcatc aacaagtcct catcgtacgt tcgaatacta cgagtattgt catacattta      4380
     tagaacattt aacagagtcg taccagatcg taaactcaag gtaaaggaaa ttttgcatat      4440
     atctgcatct gagctaaacg ttacgttctg gcgtattata gggcacatac agcagtcagc      4500
     ctttcatgag gaattgaagt tactagcaaa aaataaatct ctaaagccac acttacaggg      4560
     tctcgctcca tttattcata tgatggaatt agatagtgtc agtgtcaatg tggtaagggt      4620
     aggcgggcga ttagcaagat cagcgttgtc atttgaagca aaatttccag caatcgttcc      4680
     acgaaaccat cgtttcattc agctgtttat agaattcctt cataaggaaa aatctacatg      4740
     caaattacaa aaatactcat ttctctttct cgagaaaagt tatggattgt caacgccaga      4800
     gttctaactc gtcaggtcgt ccggaactgc acgcattgtt ttcattacaa gccaagactt      4860
     acacaacaaa ttatggggat ctgcctcctg accgacttca cgcggaacgc cctttttcaa      4920
     ttgcaggggt ggatttctgt ggcccatttc aaacgtgtta taaaatacgt ggcaagcgac      4980
     catataaaac atatgcgtcg atattcattt gctttgctac gaaagctgta cacattgagg      5040
     tggtgtctga gttatcaact aatgcatttt tattatgtct tcgaagattc atcggacgtc      5100
     ggggcctgcc ttcgaaactg tactgcgata atgctaccaa tttctgtggt gcagcaagga      5160
     aaatggacga attcaagcaa cagtttttca gtacagaggt catcgacgat cttcactcct      5220
     tcagtgcggt taaaggattt gactttaact tcattccgcc tcgagcccca catttcgggg      5280
     ggctctggga agccgctgtg aagtcagcca aaaccctttt actgaagaac atatcggagg      5340
     ccaatctcac atacgaagag cttgagacaa cgtttgctga aatagaggca attctcaatt      5400
     ccaggccaat tgcccctcaa tcagatgatc ctaacgacgg aatcgctcta acgccagctc      5460
     attttctggt tggttcatca ctgttggctg ctccagacga gtgcatcttc aaaccacagt      5520
     ccaccaccca gctaagttat ctggatcgat ggcaaagggt aacgtttctc aagcagcagt      5580
     tctggagtat gtggcagcgg gattacatac acaccctaca gcgtcgagga aaatggaata      5640
     ctcaacaagc aaacatcaaa ccgggccaac ttgtcatcat acatgaggat aacacaccac      5700
     cacaacattg gattctcgct cgcgtcgttt ccgcaatccc aggaaaggac gggaaggttc      5760
     gagttgtgga tctacaaact tcaaagaacg tgctgcaacg cccaattcat aaaattgctc      5820
     ctcttccaat ggaatagttg aaagatcata gatcctgcaa cggggggagt a               5871
//
ID   BEL-5_DTa-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   AFFI01006046;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DTa_;
KW   BEL-5_DTa-I; BEL-5_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-297
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006046; Positions   20293   20589.
XX
SQ   Sequence 297 BP; 94 A; 53 C; 59 G; 91 T; 0 other;
     tgtttgggga acaccctgtt cttttggttt gtgaatagac taaggttgaa atctgaagtt        60
     aacgtcattt taagtaaaaa tgttagtatt taatatgaac gccgcggtcc agagaaagct       120
     tactaagcga tctctttttt tgtaataacg atatctggcc actctactcg tggaaataaa       180
     ttggaaacaa cgtgaattat tgaaaacgca acgaaaacga gttctatatt ggaaacctaa       240
     ctcatccttt ggctacattg ctgttagcaa ttccctccag agcaaggtct ggaaaca          297
//
ID   BEL-5_DVir-I repbase;    DNA;    INV; 5780 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   06-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DVir_;
KW   BEL-5_DVir-LTR; BEL-5_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5780
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1785-1785 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4812-5396] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1384..2466
FT                 /product="BEL-5_DVir-I_1p"
FT                 /translation="MSAFLEKRCRMMENLKGATAPTPSHQVTRNVQKLNRN
FT                 TFIASSSNNYQQNCNFCDSKEHFLVKCPLFLNLSPSLRHKEAKRLHLCLNC
FT                 LRKGHGLQQCRSGHCRHCQQKHHSLLHMSPITTQSSALCTPSLQAATTIQP
FT                 HASSLSNPPSSTLVSTALEFAPEATNAQPVDYVVLPTAILYAKSHSGVFIP
FT                 CRALLDSGSQLNFITARLVKQLQLKTHHAAVSISGIGESTLSSNMSADVSA
FT                 QSRDRSFSTSFSAVVTRSITDYQPHFGLDISGWNIPKNISLADPTFFKSQR
FT                 IDLLLGAGLFFDLICVGQIRMADNLPTGSKRPSSDGLRLADSLAYTTNTHP
FT                 FQPFTRNLIHGRIHCRIL"
FT   CDS           2718..5780
FT                 /product="BEL-5_DVir-I_2p"
FT                 /translation="MREYIDLGHMSLASKQQLVPQFYLPHHCVEKPDSSTT
FT                 KLRVVFDGSAKSTSGASLNDLLHTGPAIQPKLFNILIHFRFLKVAMCGDIC
FT                 KMYRCVRITHPDQFLQCILWRDHQNESIRTYTLDTVTYGTKPAAFLAIRAM
FT                 QQLAHDEEPTFPLAAKIVCRDFYVDDLISGGDSIEEAIQIRQQVKLLLAKG
FT                 HFPIRKWCSNEPDALKGESESDCEKLMEFKDGTNIAKALGLAWSPSSDSLL
FT                 FNFAEIVPEGSVTKRSILSTIARFYDPLGLIAPIVTRLKVFLQALWKERVN
FT                 WDECLSQSLHFEWIKLISQLSFVSSLKFSRFVLTPLATYELHGFCDASTAA
FT                 YGACVFVRSEMQGVFSSHLLCSKSRVAPLKTLTIPKLELAAALLLSELIGN
FT                 IAKCIQFECRYHCWTDSTVALAWIRDSPSKFNVFVSNRVSQIQERTKGMTW
FT                 HHVPSQLNPADILSRGCTPLELLDSQLWHNGPPFIQAASSTWPQNVAYPFE
FT                 LPERRQKALVLSTKTDLSASCKFNNTFAKLQRTFAYVYRFIALKRSDSTRS
FT                 KGPLSTPDDIKRGTHLLIKNIQLTHFAEEYKALSLKRPLPTRSKLRSLRPL
FT                 LDAEGLLRIGGRLQNSNLEYEAKHPLLLPKRHPVTAAMITYYHLEFLHAGP
FT                 QFLLATLRQRYWPIGGLKAVSNIINRCVRCFRMRPKLLEQVMAPLPAERVQ
FT                 PSPTFHVTGIDFCGPFYVKSEVRNRSPTKCYISIFICFATKATHLELVEDL
FT                 STSSFIAALKRFISLRGKPHTIWTDNATNFVGARNELKELRDLFISDPQRN
FT                 EIVRNCLALGINWKFIPPRSPHFGGLWEAAVKSAKYHFYRVVGNSLLSFHE
FT                 FRTLICQISAMLNSRPLCYITENPNDLEILTPGHSIWGKANATIDEPDITH
FT                 LSIGRLSRWQRICHMQQSFWKKWSTSYLSLLQERGKWRPSKQNLQAGSIVL
FT                 LKEDNAPPLRWPLGRVDSVITGDDGIVRVAVIRTQNGLVKRAIAKIAVLPI
FT                 ETTSVESLYLPTGGA"
XX
SQ   Sequence 5780 BP; 1587 A; 1489 C; 1273 G; 1429 T; 2 other;
     ttggtgaccc ggcgtgatct ttcttgcttc tcgtcttgcc gcaaatctta ctttcgttgt        60
     tcatcgctct tttgctgctg cagcataggc actaaactca agtacagaca tatgtacata       120
     tgtatgtaca tattttgcac accggctcga gtgcgcgctt ctctctaacg atcttatcgc       180
     gttatttagc agatcggcta ttataaccaa gctgcctgga tatgcaccaa actgcatatc       240
     agtgccaagc acaaccgttt gcttagaaaa gaagccgtcg agcagatacc tacatactta       300
     catacataca tatgaatgtg aatgcaagtg ccgctacaat tgatctcgat acatacacat       360
     acacaagccg ctgcacacat aaaacggtaa tcgcattctc gcactgctca ctctgtgaca       420
     ttcgcagtgg tcaagggcaa agctcttctc cataagtgaa ttttggtgac aggccggagt       480
     acagtgagca ctcaacaaaa cgtaccaacc gacattacct cgccaacaac agaatggaaa       540
     attcgacaag tgaaaaagac ttttgcaaag ccaaatgcgc ttctgttcaa cgccaactat       600
     tagcaagaac gaattcttca gcgctggtga gatgatcagc tttgacgagg ccgatctgat       660
     ggtgcgtata gaatctgcgg agagcatgaa ggccgagttt gatatcagcc agtcaaggct       720
     agaaaaatta gatttgctcg ctcagacttc gagaaggttt actggaagat caaatccaat       780
     ctcgctcgtc aaatggatgt agtcactaag gggcgtatga ctgacgccaa ttcaacaact       840
     atcccacgct ttgctgaaag tacgcacaca tttgctcact tgttcaaccg taagtctcgc       900
     ctaccggaat tgcagctgcc caggttcagc ggctcctacg aggattggcc ggatttttac       960
     gccatgtaca agactgtcat tggcagcaat gaggacctaa gtaagattga gaaattacaa      1020
     catttacgtg cgtgctcgga tggcgctgct ctcaacacaa tcaaatcgtt agagcctgtc      1080
     gacgtgaatt acgacaaggc gttggagtta ctcataaagc gttttgataa taagttgcta      1140
     cattttcagg gccacgtgcg ggctatagtc gggctgccag gtgttgaaaa gggatcagca      1200
     gaggcgttgc gtgagttgag tgacaaaatt aactcgcatc ttcgggcgct tagcaccatg      1260
     tcaacaactg aggagctggc tgacggatta ctcatacaca caatatcgca caagctcgat      1320
     camcacaccc aggaaaagtg gcaggaggcg cttgcaacgg ataagctacc caggtggacg      1380
     gatatgtcgg cgttcttaga gaagagatgc cgcatgatgg aaaacttgaa aggcgctacg      1440
     gcacctacgc ctagccacca ggttaccaga aatgtacaaa aattgaatcg taacacattc      1500
     attgcatcct catctaacaa ttaccagcaa aattgtaatt tttgcgactc aaaagagcat      1560
     tttcttgtta aatgcccgtt gtttttgaat ctgtccccaa gtttgcgcca caaggaggcc      1620
     aagcgattgc atctttgcct aaactgcttg cgcaaaggcc atggcttgca gcaatgtcgc      1680
     tcaggtcact gcaggcattg tcaacaaaaa catcattcgt tgctgcacat gagccccatc      1740
     acaactcaat catctgccct gtgtacacca agcttgcagg ctgcaaccac gatccagcct      1800
     cacgcatcgt ctttaagtaa tccaccatct tcaactctcg tcagcactgc tcttgaattc      1860
     gcacctgaag ccacgaatgc ccagcctgta gactatgtgg tgcttccaac cgccatctta      1920
     tatgccaaga gccactcagg tgtattcata ccctgccgcg cattactgga ttctggatct      1980
     caactcaact ttatcactgc tcgtctagta aagcagctcc aactcaaaac tcatcatgct      2040
     gccgtatcaa tatctggtat aggcgaatca accctatctt ctaacatgtc cgctgacgta      2100
     tcagcgcagt cacgtgacag gagcttcagc acatcatttt cagcagtcgt tactcgcagt      2160
     ataacggatt atcagcccca ctttgggtta gacatctctg ggtggaatat ccccaaaaac      2220
     atctcgctcg cggatccaac gtttttcaag tctcaaagaa tagatttatt acttggtgcc      2280
     ggactatttt tcgatctcat ttgcgtcggc caaattcgaa tggcggataa cctaccaaca      2340
     ggctccaaaa gaccaagctc ggatggattg cgtctggcgg actctctcgc gtacacaaca      2400
     aacacacatc cctttcagcc ctttacaagg aacctaatcc atgggaggat ccactgtcgg      2460
     atattgtaaa acgattctgg gaagtcgaca attgctgcgg tacaaccccc gcgctctctg      2520
     atgaagacgc wctatgtgag cagctatttc tccaaggcta cacgcgacta aagtcagggc      2580
     agtattcagt taggcttcca gcaaagctca gcttcgacac gctaggagac tcatatcaac      2640
     gtgctctacg acgtttcaag tcgctcgaaa acaaattgga caaaaatcac cagctgaagg      2700
     agagctactc tgcattcatg cgcgaataca tcgacttggg ccacatgtct ttggcttcca      2760
     agcagcagct tgtcccacaa ttctatttac cccaccactg cgtagaaaag ccagatagct      2820
     caaccaccaa attgcgcgtc gtttttgatg gatcagccaa atccacatca ggcgcatctc      2880
     tgaatgatct tttgcataca ggcccagcaa ttcaacccaa attattcaac attctaattc      2940
     attttcgttt tttaaaggtt gccatgtgcg gtgacatctg taagatgtac cgctgtgtcc      3000
     gaataacgca tccagatcaa tttctgcaat gcatcttatg gcgtgatcac caaaatgaaa      3060
     gcataaggac gtacaccctg gatacagtaa cgtatggaac caaacccgct gcgtttctag      3120
     caattcgagc gatgcagcag ctggcccacg acgaagagcc tacctttcca ctagctgcaa      3180
     agatagtttg tcgcgacttc tacgtggacg atttaatttc tggaggggac tctatagaag      3240
     aagccattca gatccgacag caagtaaaac tgctactggc taaaggtcac tttccaatca      3300
     gaaagtggtg ctcaaacgag cctgatgcat taaaaggaga aagcgaatcc gattgtgaga      3360
     agctaatgga gttcaaggat ggcaccaaca ttgcaaaggc gcttggttta gcttggagcc      3420
     ctagctctga tagcctgctt ttcaactttg cggagatcgt acccgaagga tcagtcacga      3480
     agcggagcat attatcaacg atagcgagat tttacgatcc gctcggattg atcgcgccca      3540
     tcgttaccag gttaaaggta tttctccaag cactgtggaa ggaaagggtc aattgggacg      3600
     aatgcctgtc gcagtcgctg cacttcgaat ggatcaaact catatcgcaa ctctcatttg      3660
     tcagcagctt gaaattctcc cgttttgtat tgacgccgct ggctacgtat gagctgcatg      3720
     gattttgcga cgccagcacg gccgcttatg gtgcttgcgt attcgtcaga tccgaaatgc      3780
     aaggggtatt ttcatcacat ttgctatgct ctaaatcaag ggtcgcccca ttaaagacgc      3840
     tgacaatccc aaagcttgag ctggcagctg cacttttatt atcagagctc ataggaaaca      3900
     ttgccaagtg cattcagttc gaatgcagat atcattgctg gaccgactca acagtagcgc      3960
     ttgcatggat tcgtgattca ccttcaaagt ttaacgtctt tgtatccaac agggtatcac      4020
     aaatacagga gcggaccaag ggcatgacct ggcatcatgt accctctcag ctgaaccctg      4080
     cggacatttt atcacgtgga tgcacacctt tggaactttt agactcacag ctatggcata      4140
     atggaccccc attcatacag gccgctagct cgacttggcc tcaaaacgtc gcctatccct      4200
     ttgagcttcc agaacgacgc cagaaagcgc tggtactatc aacgaagacg gacctatcgg      4260
     catcttgtaa attcaacaac acatttgcca agttacagcg cactttcgca tacgtgtatc      4320
     gatttatagc gctaaaaaga tctgattcga cgagatcaaa aggtccactc tccactccgg      4380
     atgatatcaa gcgcggaacg catttactta taaaaaacat tcaacttacg cacttcgccg      4440
     aagagtacaa agcactcagc ttaaaaaggc cgcttccaac aagaagcaaa cttcgttcat      4500
     tgcgcccact gttggacgcc gagggactct tgcgcatcgg cgggcgcctt cagaactcaa      4560
     acttggaata tgaagcaaag catccgttat tgttgcctaa acgccaccca gtcaccgcag      4620
     ctatgatcac gtattatcat ttggaatttc ttcatgctgg tccgcaattc cttctagcaa      4680
     cactccgcca gcgatactgg cccatcggag gtctcaaggc tgtctcaaat atcatcaaca      4740
     ggtgcgtgcg ctgctttcga atgcgaccta aacttctgga gcaagtcatg gccccgctac      4800
     cagctgagcg tgtgcagcca agtccgacgt ttcacgtaac tggcatcgac ttttgcggtc      4860
     ctttctacgt caaatcagag gtcaggaatc gctcaccaac gaaatgctac atctcaattt      4920
     ttatatgctt tgcaacgaaa gcaacgcatt tagagttggt agaggacctg tccacgtcat      4980
     cgtttatcgc tgccttgaag agattcatca gccttcgagg gaaaccgcat acaatatgga      5040
     cagacaacgc cacaaatttc gtgggtgctc gaaatgagct gaaggaactg cgcgacctgt      5100
     ttataagcga tccccagcgc aatgagattg ttcgcaactg cctagctctg ggaatcaact      5160
     ggaaattcat tccgccccgt tcgccacatt ttggaggatt gtgggaggcc gctgtcaagt      5220
     cagcaaaata tcatttttac cgcgtcgttg gaaattctct tctctcattc cacgaattcc      5280
     gaactctcat ctgtcaaata tccgcaatgc ttaactcaag accgctttgc tatattacag      5340
     aaaacccgaa tgacttggag atactcacgc ctgggcactc catctggggc aaagccaatg      5400
     ccactatcga cgagccagac ataactcacc tgagcatagg tcgcctcagc cgttggcagc      5460
     gaatatgtca catgcagcaa tcattttgga agaaatggag tacatcgtat ttgtcgttgc      5520
     tccaagagcg cgggaaatgg cgaccgtcca agcaaaatct tcaggccggc agcatcgtgc      5580
     tgctcaagga ggacaatgca ccaccactca ggtggccgct tggtcgagtc gacagcgtca      5640
     tcacgggtga cgacggcatt gtgagagtag cagtcattcg tacacaaaat ggtctggtca      5700
     agagagccat tgccaaaatc gccgttctgc caatcgagac cacatcggtt gaaagcttgt      5760
     atcttccaac ggggggagca                                                  5780
//
ID   BEL-5_DVir-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   06-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DVir_;
KW   BEL-5_DVir-I; BEL-5_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-272
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1786-1786 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 272 BP; 99 A; 51 C; 38 G; 84 T; 0 other;
     tgttcgcagc agaacgccct ctgaataata ttatatctga attacaatac atctttactt        60
     ctcaaatcac gatattgaag tcacatacta ttatttttaa accaccataa aataccattg       120
     taatcatcac taatgtatcg atagttattg ttgaaagttc gagaagtaaa tcacgcatta       180
     caagcagtct aaaggctcct ttgattttta ttaaaattta taaaacataa aaggggccga       240
     agtggggtgc aaactagcat ctcctcaaaa ca                                     272
//
ID   BEL-5_DWil-I repbase;    DNA;    INV; 5810 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DWil_;
KW   BEL-5_DWil-LTR; BEL-5_DWil-I.
XX
NM   BEL-5_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5810
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           377..5809
FT                 /product="BEL-5_DWil-I_1p"
FT                 /translation="MATKDLSSGIYHCKKCMQEDNDRMVQCNRCCSWYHFD
FT                 CVGVIDEKSENSWNCDCVNVSSEVITTILSNALQNLGNTTRAGEPQATSSP
FT                 AKPTAPLPEPDRDFGLCPPKVFPDTARTAVPIFTSAKQKAMVTHSAVRDTW
FT                 HYDHEAPQLPFLTSNNTRATTREQPHLSATPMAPWNFTNTQTRAASYYPES
FT                 KVRMDIDLNTAIPSAAQLAARQAIPKELPTFDGNPQNWPLFYSSFQTSTEI
FT                 AGYTNAENLMRLQASLKGKARELVQSKLLLPAMVPEIIQTLRMCFGRPEHI
FT                 LHNLLEKTRQLPAIKDKLEPLIEYALCVRNIYSTMEACGLTGYMQNPMLVQ
FT                 ELLEKLPTQLKLQWAMFPKDTKVPSMESFSKWIYDIAEAASQVTSPLYHKK
FT                 SGSLNHHTEAPKEQVKEITCVVCNEPGHKIHSCPSFKATPHQRKMSFLKNH
FT                 KLCQQCLNRHHQKCQREKVCGIRGCRSKHHPLIHEMQPMPEAAKSSSPNRP
FT                 AMVTNVHTPEGKHTQRSRESGSTYFRVIPIQIINKTKVTNTFAFLDEGSAL
FT                 TLIDNKVFKQLGLKGVPDPLCLKWTNDTTREENASERVTLTVANPHNGNQF
FT                 YLEEVHSVDTLDLPVQSIDIRALAKEFPHLAGLPIASYTNARPSILIGTNN
FT                 WNLAVPLKIKEGAWHQPIASKTRLGWALQSSTPSRATRANVSVHMCGCRDA
FT                 DAKLHEIIKQAFSLDATTAKPLSSPEETQALTRLESTTALKNGRYEVGLMW
FT                 KDPEVLLPDSYANALKRLKCLQKQFSRQPQLKEQITKQIENLVEKGYARML
FT                 TPEEIAAPNRRTWYLPTFITKNPNKPEKVRLVWDAAAQSGGKALNDYIWSG
FT                 PDLLNSLFDLLLSFRVGRVAICGDIAEMFHQIRVRPADTHAQRFLWFDSKS
FT                 ERQEPNVYVMEALTFGINCAPCIAHFIRDKNADRFCQQYPQAAQAMKDYHY
FT                 VDDFIYSGDNYVEVGNIATQVRDIHAAGGFHIRNWSSNSKEVLRILKSDSL
FT                 LPEAVEITATEKVLGLYWMPNSDVFTFICKFARLKRNVLDSDKTPTKRELL
FT                 QVLMSMYDPLGFISCFTIELKILLQEVWRSGIGWDTGLPDALLPKWIRWKR
FT                 ILTTIAGLTIPRCYFNSSDQIHDVQLHTFVDASELAYAAVCYLRIRQGERT
FT                 YLSFVASKAKVAPLSPLSIPRMELQAAVIGAKLSNRIQRNPSLSINSSCYW
FT                 SDSKTVLKWLRMDPRKFQQFVMHRVGEILEFTNVSQWNWVPTNLNPADLAT
FT                 KTNNANKYKTWLHGPDYLLQDQHEWPKCDDLGPPNNAEVRHNILFIDNSPM
FT                 ELKLNAEYFSDWRRLYRALARFILYIEKLKAKQKKASPPTEVSYEMIQQAR
FT                 TLLLRHAQSSEFNPEIRNLTRGKPLKTNSKLICLNIFLDENQLLRTRGRAE
FT                 NLNGQNQILLPYGHHITRLIVNWYHQEMHHTSHETCINRIRGMFYIPRLRV
FT                 LYKGMRKSCQRCKNESAMPVPPQMAPLPIARLAAYQRPFTYVGIDYFGPFL
FT                 VAVGRRSEKRWGVIFTCLTIRAVHIELACSLDTASCIMCIRNFINRRGTPR
FT                 EIYSDNGTNFKAAEKIICDKAQTINFNAVQPAFDDIKWKFNPPAAPHMGGA
FT                 WERLVRSVKTVLYAICPARKFTSEGLQSALWEVEFILNSRPLTFVSLDSKD
FT                 DEAITPNHLLLGSASGYKPVFETTHTVQHMWQAVQEFADQFWRRWVREYVP
FT                 DLARRGKWFTKRPPIAAGDVVVILDETLPRNRWPKGIVEQTILAKDNQVRR
FT                 VIIRTANGTLQRPVAKVAVLDVGCFGAKQPPEESSFTGGG"
XX
SQ   Sequence 5810 BP; 1821 A; 1504 C; 1246 G; 1239 T; 0 other;
     attctataaa ttaatggcag gaattaattc tataaattaa ttctataaat tatgccagga        60
     attaattcta taaattaatt ctataaatta cgccataaag gcaatgaatt aattctaaaa       120
     attaattcta cagattaatt ccataaatta atcttacagt ggtaaaccac taaatgaacc       180
     ggaaaagtta attatttaac tcaactcgac gggtcaaccc acggttctac acgccaatca       240
     tatagaggtt aacctcgatg attgcataac caatcactaa attgtgatac ataacctcaa       300
     cggtcaaccg tttacgacct acataggtca cataactaat caacatcgct taaaagtata       360
     aactcattgg taaaccatgg caacaaaaga cttatcaagt ggaatatatc attgcaagaa       420
     atgcatgcag gaagacaatg accgcatggt gcaatgcaat cgatgctgtt cctggtatca       480
     tttcgactgc gttggagtaa tagacgagaa atctgagaac agctggaact gcgactgcgt       540
     caacgtgtca tcggaagtca tcacaaccat attgagcaac gccctgcaga acctcggaaa       600
     taccacacga gcaggcgaac ctcaggctac ttcgtcacca gcaaaaccaa cggcgccgct       660
     accagaaccg gatcgggact ttggactatg cccgccaaaa gtattcccgg acacagctag       720
     gacggctgtt cctattttta cttctgccaa acaaaaagcg atggtcacac actcagctgt       780
     gcgtgacacg tggcattacg atcacgaggc accgcagctg ccgttcctaa cctcaaacaa       840
     cacgcgtgct acgacacgcg aacaaccgca cctaagtgct acgccgatgg ctccctggaa       900
     tttcacaaat actcaaacca gggctgcatc gtactatcca gaaagtaaag tgcgaatgga       960
     catagaccta aacacagcaa taccaagcgc ggcacaactt gcagcccgtc aagcgatacc      1020
     gaaagagctt ccaacatttg atggcaatcc tcagaactgg cctctattct acagtagttt      1080
     tcagacaagt acggaaatcg ctgggtatac gaatgcagaa aatcttatgc ggctgcaagc      1140
     tagcctgaag ggaaaagcac gtgagttagt tcaatccaaa ctcctgttac cagcaatggt      1200
     ccctgaaatc atacaaacat tacgtatgtg tttcggtcgg ccagagcata ttttgcacaa      1260
     cttactggaa aaaacgcggc aactacccgc aataaaagat aagcttgaac cacttatcga      1320
     atacgcactg tgtgtacgaa acatctactc aacgatggaa gcatgtggac tcacaggtta      1380
     catgcaaaac ccaatgctcg tacaagagct actagagaaa ctccccacac aattgaagct      1440
     gcagtgggca atgtttccca aagacactaa ggtaccatca atggaatctt ttagcaaatg      1500
     gatctacgac atagctgaag cagcaagcca ggtaacatcg ccgctttacc ataagaagag      1560
     cggaagccta aatcatcaca cagaggcacc taaagagcag gtcaaggaaa ttacgtgcgt      1620
     cgtatgtaac gaacctgggc acaaaataca cagctgccca tcgttcaaag ccacgccaca      1680
     tcaacgaaag atgtcttttc tgaaaaatca caagctctgc caacaatgcc taaaccgtca      1740
     tcaccaaaag tgccaacgtg aaaaggtttg cggcatacga ggctgccgaa gcaaacatca      1800
     cccattgatc catgagatgc agccgatgcc agaggctgcg aaatccagca gcccaaacag      1860
     accagctatg gtcaccaacg tgcatacgcc ggagggcaag cacacccaac gatccagaga      1920
     gtctggctca acatatttcc gtgtcattcc aatacaaatc atcaataaaa cgaaagtcac      1980
     taacactttt gcatttctag atgagggatc ggcactaacg ctcatcgaca acaaggtctt      2040
     taagcaactc ggcttaaaag gcgttccaga tccactgtgc ctaaaatgga ccaacgatac      2100
     aacacgcgaa gaaaatgcat cggaacgtgt cacgcttacg gttgccaatc cacataatgg      2160
     caatcaattc tacttggaag aggttcacag tgtagatacc ctggatctac ctgtacagtc      2220
     tatcgacata agggctctcg ccaaagaatt cccccaccta gcgggactac cgatagcatc      2280
     atacaccaac gcacgcccaa gcatcctaat cggcacaaat aactggaacc tcgccgtacc      2340
     ccttaaaatc aaagaggggg catggcacca accaatagcg tcaaagacgc gactgggatg      2400
     ggcactacaa agctccacgc catcaagggc cactagagct aatgtcagcg ttcacatgtg      2460
     tggatgccga gacgcagacg ccaagctgca tgagatcatc aaacaagcgt tctcattaga      2520
     cgctaccaca gcaaaaccgc tatcatcacc agaagaaact caagctctaa ccagacttga      2580
     atctactacc gccttgaaga acggcaggta cgaggtcggt ctaatgtgga aagaccctga      2640
     agttttatta cctgatagct acgcaaacgc actaaaacgg cttaaatgcc tacaaaagca      2700
     attttcccga caaccacagt tgaaggagca aatcaccaag caaatcgaaa acctcgtcga      2760
     aaagggctat gctcgcatgc tgacgccgga ggaaatagct gcaccaaaca gacggacatg      2820
     gtatctacca accttcataa ctaaaaatcc aaataaacca gagaaggtcc ggcttgtatg      2880
     ggacgcagcc gcccaatccg gcggcaaggc cctgaatgac tacatctgga gtggtccaga      2940
     tctcctaaac tccctgtttg acctcttact ctcattccga gtgggacgag tggcgatctg      3000
     tggcgatatc gccgagatgt tccaccagat ccgagtgaga ccagcagaca cccatgcgca      3060
     aaggtttctg tggttcgaca gcaaatccga gaggcaagag cctaacgtct atgttatgga      3120
     agcgcttact ttcggaatca attgcgcacc ctgcattgca cactttattc gtgacaaaaa      3180
     tgcagatcga ttctgccaac agtaccctca agcagcacaa gccatgaagg actaccacta      3240
     cgtggatgat tttatataca gcggcgacaa ctacgtggaa gtcggaaaca tcgcaactca      3300
     agtcagagac atccatgcag caggtggttt ccacatacgc aattggtctt cgaactcaaa      3360
     ggaggtccta cgaatactaa agagcgattc gctactcccc gaagctgtcg aaattaccgc      3420
     aacagaaaag gtactcggct tatattggat gccgaactcc gacgtattca cattcatctg      3480
     caagttcgcc aggctgaagc gcaacgtttt agacagcgac aaaacaccaa ccaaacgcga      3540
     gctcttgcaa gtacttatgt caatgtacga cccactcggc ttcatctcat gctttacaat      3600
     agagctgaaa atcctactgc aagaagtctg gagaagcggc attggctggg atactggttt      3660
     gcccgacgca ttgttaccca aatggatacg atggaaacgg atccttacaa caatcgccgg      3720
     attgaccatc ccgagatgtt atttcaacag cagcgatcaa atccatgatg tccagttaca      3780
     cacgttcgtt gacgccagcg aattggcata cgcagcagtc tgctaccttc ggatacgcca      3840
     gggggaaaga acctacctca gcttcgtggc ctccaaggcg aaagtggcac cgttgagtcc      3900
     actatctata ccaaggatgg aactgcaggc cgcagttatc ggagcaaagc tgagcaaccg      3960
     aatccaacgc aatccaagtt tgtcaattaa ctcgagttgt tattggtccg actcaaagac      4020
     tgttctcaaa tggcttcgta tggatccacg aaagtttcag caattcgtca tgcaccgcgt      4080
     gggcgaaata ctggaattca caaacgttag ccaatggaac tgggttccaa ccaaccttaa      4140
     ccctgcagat cttgctacta aaacaaacaa cgccaataaa tataaaactt ggctacacgg      4200
     tccagactat ttgctgcagg atcaacacga gtggccaaaa tgcgatgatt tggggccacc      4260
     aaacaatgct gaagtcaggc ataacatact cttcatcgac aattcgccga tggagctaaa      4320
     acttaacgcg gaatattttt ccgactggcg caggctatat cgagctttag cgcgctttat      4380
     tctctacatt gagaaactga aagcgaaaca aaagaaggca tcgccaccta cagaggtgtc      4440
     ttacgagatg attcagcagg cacgcacact cctactgcgg catgcgcagt catctgaatt      4500
     caacccagaa attcgcaact taacgagagg taaaccttta aaaacaaatt ctaaactcat      4560
     atgtttgaat atctttctag atgaaaacca gctcctacgt acccgagggc gagcagaaaa      4620
     cctaaacggc caaaaccaaa tactgctccc atatgggcac cacattactc ggctcatagt      4680
     gaactggtat catcaggaaa tgcaccacac atcccatgag acgtgtatta acaggattcg      4740
     aggcatgttt tacataccac gtctacgagt cttatacaaa ggcatgcgga agtcttgcca      4800
     acgctgtaaa aatgagagcg ccatgcctgt tccaccgcaa atggctcccc tgcccatcgc      4860
     caggctggct gcctaccaac gtcccttcac ttacgtcggt atcgactact tcgggccctt      4920
     cttggttgct gtaggacggc gaagcgaaaa aagatggggc gttattttca cctgcctaac      4980
     catacgggca gtgcatatag aactggcgtg ctctttggac actgcatcgt gcataatgtg      5040
     catccgaaac ttcatcaatc ggcgcgggac cccgagagaa atttacagcg acaatggcac      5100
     taacttcaaa gctgctgaaa agattatctg tgacaaagcg cagacgatca acttcaacgc      5160
     cgtgcaaccg gcgttcgatg acatcaaatg gaaatttaat ccaccagccg ctcctcatat      5220
     ggggggagca tgggagcgac ttgttcgttc cgtcaagact gtactctacg caatctgccc      5280
     agcgagaaaa ttcaccagcg agggcctaca aagcgcactc tgggaagtgg aattcatcct      5340
     aaattccaga ccgcttactt ttgtctctct ggacagcaaa gacgacgagg ctatcacccc      5400
     taaccatcta ctactaggat cagcaagcgg ctataaacca gtcttcgaaa ccacacatac      5460
     cgtacagcac atgtggcaag ctgtacaaga attcgccgat caattctggc gacgatgggt      5520
     acgcgaatac gttccagatt tagccaggcg aggaaaatgg tttacgaaga gaccaccaat      5580
     agcagctgga gacgtcgttg taatattgga cgagactctg ccccgaaata gatggccaaa      5640
     aggtatagtc gagcaaacaa tcctggccaa agacaaccag gtgcgtcgag tgatcatcag      5700
     aactgccaac gggactcttc aacggcccgt ggctaaagta gctgtattag acgtcggctg      5760
     ttttggagca aagcaacccc ctgaagagag cagctttact ggggggggaa                 5810
//
ID   BEL-5_DWil-LTR repbase;    DNA;    INV; 448 BP.
XX
AC   scaffold_181039;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DWil_;
KW   BEL-5_DWil-I; BEL-5_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-448
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181039; Positions  409833  409386.
XX
SQ   Sequence 448 BP; 132 A; 116 C; 87 G; 113 T; 0 other;
     tgttgccgcc gaaattcgct aactgcccag cagacccgac gcagccacca atgggttaac        60
     ccatatcact cattctcttt cattttcata cttattctta agcaccagcc tatgtgctgg       120
     gaaattaacc gttgcatctt gcgctttaag cttacatgtt aggttctatg cttgttacta       180
     agcggcggac agaacagttt ggttacaacc gcgagtaagg gcgattaatt tatagcggct       240
     cgcttacaat catagcagct ctcaaaaacg gctctcgctt acaatcatag cggctcgcat       300
     aataacgact cgcatacggc acacacacca tacacacccc attagcataa gaaatacacg       360
     tggaagaaat aaatgaagta tcacgtgaaa agtggagtgt tttcttgtgg gcccgctaaa       420
     acatcgaacc ttagcgccaa actcaaca                                          448
//
ID   BEL-5_DYa-I repbase;    DNA;    INV; 5651 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5651
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1787-1787 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           514..5616
FT                 /product="BEL-5_DYa-I_1p"
FT                 /note="DUF1758, DUF1756, reverse transcriptase,
FT                 peptidase A17, and integrase."
FT                 /translation="MSSLEQLKAQRTSARKNLTRMSKSVEPGLNLSPLELS
FT                 CRLSILESYFKLALSTQEAIEQMEPAEAQRNTRFEIEELFIHAKVCVQEQL
FT                 GPDANSTGIHESTVNFGHTSAVKLPRLSLPTFDGKYCEYQNFILSFNQVIG
FT                 HQPSMSKIEKFNQLLNCLRGPALETVRAFQVTADNYTKALDRLKQRYDNPT
FT                 LVFLDNISSLFALPTVAKSNGQQLRSLIDNASALYNSLRSLSTEPQICEAM
FT                 LISIVMGKVDQETKRKWNESLDYTTLPSWDKCVGVVERHCQYLESDKKPPA
FT                 EAPMSQPGGHRSRSQRNQASLSFNCTTQTCNICSQTDHKTFRCPELINLAL
FT                 DNRLNAVKRHKLCINCLGRGHLVANCPSTRRCHSCALPHHSLLHRPSPGSA
FT                 AAPLPLPQAEPVQVSDAVAHTHTESRSDCVILATALILVKDASGSYKIGRA
FT                 LLDSCSQVNFISEEFAQRLRLPRSKLNLEIRSIGETQTRIKHHATTNIKSR
FT                 HNGFELLLDFCVTSHIAYHPESEIDISAWNLPQHSSLADESFNKSRRIDLL
FT                 LGTETFFDILAVGQVKLGKDLPVLQKTLLGWIVSGRCRAHPRTLHQYSSIA
FT                 LTEIDQKMERLWRIDHVEPPEITLTPEQRNCEEFYTKTVRRNSDGRLEVRL
FT                 PFKDEPTVLGASFDIAKRRFLSLERSLCKRPEVGAKYVEFMQEFQNLGHMS
FT                 PVSHPQLNTPHYYIPHHCVLKPNSTSTKLRVVFDASCKTTSQKSLNDILMV
FT                 GPTIQPDLYTLLLRFRIHRYAITADVVKMFRQVNMFAEDRRFQYILWRASP
FT                 SQPLSTFELNTVTYGTAAAPYLAIRSLSYLADKFMDKLEIGAKAIKSSFYV
FT                 DDFLGGADTVEELHQIKREVTAILQDGQLELAKWHSNHCKFVDDATVKHLQ
FT                 LDDEMLTSTLGLKWDQVRDTFMFSFSPRFDSDHVTKRSILSIASSLFDPLG
FT                 LVTPIIIVAKIILQELWLLKLHWDESVPQGIHTAWMSLLASLSSLESVAIP
FT                 RYCLQSAIHTFQIHGFCDASIRAYGCCIYARTIGSDGLTKVQLITSKSRVA
FT                 PTKKLSLPKLELCGAHLLAQLYKKIIRIFADRKPTSFLWCDSQIVLHWNRQ
FT                 HSATLSTFVGNRIAEIQELTSDCHWRHVPTHCNPADILSRGCTITELEQSI
FT                 WFEGPEFLGQDHQHWPKDSRDNSDIDMETVQLEKRKSAFAVHTTSNQLLEG
FT                 IYKISSHHRCLLVIAWMYRFTQRCRKLTPFQSPSPTPAELMRALHCIVWNI
FT                 QTIHFAQEMSSVLKGHPIRTNLKNLSLFLQVTDGFQMLKVGGRLELADYPE
FT                 TQKHPVLLPAKDPFVSQFARHLHLQNYHAGPRTLVALIRKQFWIVNARDLA
FT                 RQVVRSCIHCRRYRPTLERQLMGQLPKERITPSRPFSRCGIDFCGPINVYL
FT                 RIRGKPPTKAYLAVFVCFATKAIHVEVVSDLTTDSFIASLKRFIARRGLPS
FT                 DIFCDNATNFAGANNKLESLKQFLFKDETTKTIHYFCRSEFINFHFIPPRA
FT                 PHFGGIWEAAVKSVKGLLNRTLRDTRLTFEELATAAADVEAILNSRPLTPL
FT                 SSDPNDLAALTPGHFLVGDALRALPELPPIDDNLDKLDRWKRVSALKHHIW
FT                 SRWSHEYINELQVRTTWTKTSPNLAVNDMVIVHEDNLPPQRWLLGRIVSTI
FT                 AGADNIVRVADVRTAKGIIRRPIRKLALLPVS"
XX
SQ   Sequence 5651 BP; 1500 A; 1516 C; 1251 G; 1384 T; 0 other;
     ttttggcgac cgtgacagga cttgtgctac gttttagtta attttggtga tgattgtggt        60
     tacgttcgcc cccattttta ctttgctcta agtctcgcac gcgcatttac gacttttgcc       120
     ctgccaaact ctcgtacatt cgcgcatcgc gttcgctgcc ggtctaccca gcgtccgcat       180
     aggattttcg ctagtgcatt tgcgcacaac tacatgcagc gcagctgccg gctatactca       240
     agggtctccc gccgcatcat tggacatcgt tggacatcct ccaagtgtca tcgccatagt       300
     tggagtcgac atctcggtcc tccatctata catattgccc ccaggagcac ccccatacat       360
     aacctcattc tgtcgcaaca ctctaggttg cactctaggc ttggcgagcg aaaattttcc       420
     actacatctc gtcgtctcgc tcgctctcac agaccttgtc aagcaaggaa ttgccagatc       480
     gaaattaaat aaagtaaaca aacatctgca aaaatgtctt cgctggagca acttaaagct       540
     caacgaacga gtgctcgaaa aaaccttaca cgtatgagca aatcagtgga acctggtttg       600
     aatttatctc cgttggaatt atcttgccgt ttgtcgattt tggaatcgta ttttaaactt       660
     gctttatcta cccaggaagc catagagcag atggagccag ctgaggcgca gcgcaatact       720
     cgcttcgaaa tagaggaact gtttatccac gccaaggttt gcgttcagga gcaacttgga       780
     ccagacgcta acagcaccgg cattcatgaa tctacggtta attttgggca cacatctgca       840
     gttaagctcc cgcgcttatc attgccgaca tttgacggca aatactgcga gtaccaaaac       900
     tttatcttgt cgtttaacca agttattggc caccagccat ccatgtctaa gatcgagaag       960
     ttcaaccagt tgttaaactg tcttcgagga ccagcccttg aaacggttcg agctttccag      1020
     gtgaccgcag acaactacac aaaggctctg gaccgcttaa agcagcgcta tgacaacccg      1080
     actctcgtat ttttggataa catatcgtca ctcttcgcat tgccaactgt cgccaagtca      1140
     aatggtcagc agttgcgcag cctaatcgat aatgcatccg cattatacaa ctcgttgcgt      1200
     tcgttgagca ccgagccaca gatttgcgag gccatgctca tctccatagt tatgggcaaa      1260
     gtggaccagg agactaagag gaagtggaat gagtcgctgg actacactac gttgccttcg      1320
     tgggacaaat gcgttggagt cgttgaacgt cattgtcaat atttggaatc ggataagaag      1380
     cctcctgctg aagcccctat gagtcaacca ggtggccata ggtcgcgctc gcagaggaat      1440
     caggcaagtc tgtccttcaa ttgcaccaca caaacttgta acatctgttc acagacagac      1500
     cacaagacct ttagatgccc agaactaatc aatctcgccc tagataatcg cctcaatgca      1560
     gtaaagcgcc acaagctatg cattaattgc cttggcaggg gtcatcttgt agccaactgc      1620
     ccgtcgacgc ggaggtgcca ctcatgtgca ctaccgcatc actcgctgct tcatcggcca      1680
     tcgccaggat cggccgcagc tcccttgcca ctccctcaag cggagcctgt acaagtttcg      1740
     gacgcagtcg cgcatactca cacggagtct cgttccgact gtgtcattct ggccacggca      1800
     ctgattctgg tcaaggatgc atctggaagc tacaaaatag gaagagcgct tctggattca      1860
     tgttctcagg tgaatttcat atccgaggag tttgcccaaa gacttcgact gccacggagc      1920
     aagctcaacc tcgagattcg tagcattggt gagacacaaa cgcgaattaa acaccatgca      1980
     accaccaata tcaagtcgag gcacaatgga ttcgagttgc tccttgattt ttgcgtgaca      2040
     tcccacatcg cctatcatcc agaatcggaa attgacattt ctgcgtggaa ccttccgcag      2100
     cactcatctc ttgctgacga gagcttcaac aagtctcgtc ggatcgatct gcttttgggg      2160
     acggaaacct tcttcgatat attggcagtc ggccaagtta aattaggaaa ggatctgccc      2220
     gtactacaaa aaacactact tggatggata gtgtctggtc gatgtcgagc tcatcccaga      2280
     acactccatc agtactcatc tatcgcatta acagaaattg accaaaaaat ggaacggcta      2340
     tggcgcatcg atcatgtgga gcctcctgag atcacactta cgccagagca gcgaaactgt      2400
     gaggagttct acaccaaaac ggtacgacgt aattcagatg gtcgattgga agtacgactt      2460
     ccatttaaag atgaacctac cgttctcgga gcctcattcg acattgccaa aaggagattc      2520
     ctctccctcg aacgcagcct atgcaaaagg cctgaggtag gggccaaata tgttgaattt      2580
     atgcaggagt ttcaaaatct gggacacatg agtcccgtga gccatccaca gttaaacact      2640
     ccgcattatt atattccgca ccactgcgtg ctcaagccta atagcacatc aacaaagctc      2700
     agagtggttt tcgacgcatc ctgcaagacg acgtcccaga aatcgctcaa cgacattctg      2760
     atggtcgggc cgaccattca gccagatctt tatacactac tcctgcgttt tcggatacat      2820
     cgctatgcca tcactgctga tgtggtcaag atgttccgcc aagtcaacat gtttgccgag      2880
     gatcgcagat tccaatacat tctttggaga gcgtcgccat cgcaaccatt gagcaccttc      2940
     gaattgaata ctgtaactta tggcacagcg gctgcaccgt atctagccat acgcagtttg      3000
     tcatatctag ccgacaaatt catggacaaa ttggagattg gagctaaagc catcaaatcg      3060
     tctttctatg tggatgactt cctaggtgga gcggatacgg tagaggagct acatcaaatc      3120
     aaaagggaag ttacagcgat tctacaggat ggccaattag aactcgcaaa atggcattca      3180
     aatcactgca agtttgtcga tgacgctaca gtcaaacatt tgcagttgga cgacgaaatg      3240
     ctaaccagca cgcttggcct aaaatgggac caagtacggg acacattcat gttctcgttc      3300
     tcgccaagat tcgattcgga ccacgtcacc aagcgctcga ttttgtccat agcctcttcg      3360
     ctgtttgatc cgttgggatt agttactccc atcatcatag tggcaaaaat tatcctccag      3420
     gagctgtggc tcctaaaact acattgggac gagtcagtac cccaaggcat tcatacagct      3480
     tggatgtccc tgcttgcatc gctttcgtcg ttggagtctg tagcaatacc acgatattgc      3540
     ctccaatcag cgatacatac ctttcaaata cacggctttt gtgacgcctc cattcgagcg      3600
     tatggatgct gcatctacgc tcgcacaatc ggatcagatg ggctgaccaa ggtacagcta      3660
     atcacatcga agtccagagt tgctcccacc aagaagctat ctctgccgaa attagaactg      3720
     tgtggagcac atttgttagc acagctctac aaaaaaatca ttagaatctt cgctgacaga      3780
     aagccgactt cgttcttatg gtgcgattct caaattgttc tacattggaa tcgccaacac      3840
     tcggccacct tatcaacctt tgtcggcaat cgaattgccg aaattcaaga actcacgtca      3900
     gattgccact ggagacatgt tcctactcac tgcaacccgg ctgatatctt gtccaggggc      3960
     tgcactatca ccgagttgga acaatcgata tggttcgagg gacctgagtt cctaggccaa      4020
     gatcatcaac attggccaaa ggacagtcga gacaacagtg acattgatat ggaaactgtc      4080
     caactggaga agagaaaatc agcctttgcc gtacacacga ctagtaatca actgcttgaa      4140
     ggaatctaca agatcagttc gcatcatcgc tgcctactag ttatcgcttg gatgtacaga      4200
     tttactcagc gctgccgtaa actaacgcca ttccaatcac cttcgccgac gccagcagaa      4260
     ctgatgcggg cgctacattg catcgtctgg aatattcaaa ctattcactt cgctcaagag      4320
     atgtcctcgg tcctgaaggg ccatccgatt cgcactaacc ttaaaaatct tagtctcttc      4380
     ctccaggtta cagatggctt ccaaatgcta aaggtcggag ggcgcctgga gctagcagac      4440
     tacccagaaa cccaaaagca tcctgtgctg ctcccagcta aggatccatt tgtgtcacag      4500
     ttcgctcgcc atcttcatct acagaactat cacgccgggc cacggacgct cgtcgcttta      4560
     attagaaaac agttctggat agtgaatgca agggacttgg cgcgacaagt cgttcgctca      4620
     tgtatacatt gtcgccgcta tcgaccaact ctcgaaaggc agctaatggg ccaactgcct      4680
     aaagagcgga tcacaccatc tagaccattt tcaagatgcg gaatagactt ttgcggacca      4740
     atcaacgtct atttgcgcat ccggggtaag ccgcctacca aggcctacct agccgtcttc      4800
     gtttgctttg ccacgaaggc gatacatgtc gaagtggtat cggatctcac gacggatagc      4860
     ttcattgcat cactaaagcg ttttattgcc cgacgcggac ttccctcgga catattctgt      4920
     gacaacgcta caaatttcgc aggagctaac aacaagctcg aatcgttgaa gcagtttctg      4980
     tttaaagacg aaacaacaaa aacaatccac tatttctgtc gctcagagtt cattaacttc      5040
     cactttattc cacccagggc tccacacttc gggggcatat gggaagctgc agtaaaaagt      5100
     gtcaagggac tactcaatcg cactcttcga gacaccaggt taaccttcga ggagttagcc      5160
     actgcagctg ctgacgtcga ggcgatcctg aactctcgcc cgttaacgcc gctctcatca      5220
     gacccaaacg acctggccgc tctcacgcct ggccacttct tagtgggtga cgcactccga      5280
     gcactaccgg aacttccacc aatcgacgac aacctggaca agttggatcg atggaaaagg      5340
     gtcagcgcac tcaaacatca catctggagt cgctggagcc acgagtacat caacgagctc      5400
     caagttcgca caacctggac gaagacttca ccaaatttgg ctgtcaacga catggtcatc      5460
     gttcacgagg ataatcttcc cccacaacgg tggcttcttg ggcgcatagt cagcacgatc      5520
     gcaggagcgg acaacatcgt gcgtgtagcc gacgtacgca ctgccaaggg aatcatccgc      5580
     cgccctatac ggaaactcgc cttattacct gtctcttgaa agtcaatcgc atactttcaa      5640
     gggggccggt a                                                           5651
//
ID   BEL-5_DYa-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-297
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1788-1788 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 297 BP; 112 A; 43 C; 59 G; 83 T; 0 other;
     tgttgggtca aaacccaatt agaataatct tgtatatttg aattccgcgt tttttgaatg        60
     atgttaacat aacagctgtt gcgctaggct gccaactcgt actagcgaac gagtggcaga       120
     taggaattag aaaaaagaga gaatagaaca aggacagatg aaaaattgaa gttgaagata       180
     tagccacgag gagtttaagt gaggagaaat aatcaagaat tgtcattaaa atttaactat       240
     taaactagca ccatccgact tatcatttat actcaagaaa aagctcttgt ttttaca          297
//
ID   BEL-5_FoCa-I repbase;    DNA;    INV; 5581 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5581
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2586-2586 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..1136
FT                 /product="BEL-5_FoCa-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MAPSAIDKVERDRDTVKVNLTWLEKRFNDHVTAPAPE
FT                 AKIRHYIKTVERQEKIEDLFQKIASIVDHKDMDPHSAEYMSMKDRALELEH
FT                 QFATVLKTFAVPVIPTAASPSTPSTLQLPKLTLPTFDGDLNEWIAFRDMFT
FT                 NAVHNNASLSKSQKLTYLKAQLKGEAARQVQSITISDANYDIAWTQLSDRY
FT                 QNDREIFFSIMKRFHDQPLVQPHSAHGIRQLLDVSRECIRSLDVLKLSTHH
FT                 WGAHLMFIIARKMDYASKELWEQSLKDSAIPSLQTLYDFLEQRARALSASS
FT                 TNAQKSSKQATHRHDNEKTSRPNGQPSGNLAHLVQSPPCKVCSENHPVFKC
FT                 PTLNAMSVQEPKR"
FT   CDS           1058..5470
FT                 /product="BEL-5_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MQSMFGKPSSFQMSNPKCHVRTRTEAVKKASLCFNCL
FT                 KDNHTSAQCQSSKTCRTCNGKHHTLLHRGRNPDASRSQETSSHTVHLARSG
FT                 TATATAKPDKQHNGSNGQVFATTCQDMKTKNLETLLAIARVLVPDRYSKLQ
FT                 PIRILSDSGSNTHYITESCIKKLGLPRTRCVASATGLGEGALTVAKGFTWL
FT                 TVSPHFNPSISMKVKALIIPKITGDLPLNPISQHQWPHLQNLKLADPSWHQ
FT                 PLPVDMLLGAEFFFEVTKDGKKTGPPGSPVALNSSFGWMIGGGCPDYNNSL
FT                 LRNVSHLSTTDHMTEEQSLDQAMRKFWEIEEVPPHHRTLTKEEEACEEHFT
FT                 STVKQTSNGQLMVHIPYKLPCPVLGSSLEIAIRRLKQIERRLAMQPHYKDE
FT                 YAKFMKEYLDLGHMTEVAPPDKDDTNHCYIPHHFVLKADSTTTKFRIVFDA
FT                 SSKTSNGVSLNDTMLIGPTIQDNLFDLILRFRLHKIAFTADVEKMYRQVLV
FT                 RPEDANLQRIVWRENSNEPIKHFMLRTVTYGTAAASFQATRALQEVGQLKK
FT                 EELPKAAAVICRDFYMDDLISGDANEEDALITQSQLLEAMESGGFKLRKWS
FT                 SNCETLLNALPEDLRESKSTLPLDVDPTIKTLGICWNPKEDVFVFKIQPPA
FT                 HDDTPLTKRKVLSELAKIFDPPGWLSPVIINAKLLMQPLRTLQVGWDTTLP
FT                 ESIQQQWISLVRDMSTLARLQLPRHYLHDSAIASPTLDVPVVTNMSGLCGQ
FT                 SSQLNPAISSTMLGVPVVDTDSSKQRHGHTLQSSTPHHPTQSNNSSLPAYC
FT                 LAGFSDASERAYSAVVYFCAYQEDKISTSLITSKTRVAPVKTVSLPRLELC
FT                 GALLLSELMSSVQSALRIPLHSVTAWTDSSVTLSWIKSHPSRWKTFVANRL
FT                 TKIQALVPPERWGHVRSEDNPADCASRGISSSELINHSLWWKGPHWLKHGI
FT                 PIPHGVIGPHDDQCKNEERNQTICHAVISSPNQVLLNKYSSLDKLLRVTAI
FT                 LLRFATNCRAKVRSSNPTMLPLTPVELNRSLLCWVRITQAEAFALEIKCLQ
FT                 QDKNIPLSSKIVTLKPFMDQDSVLRVGGRLRHSLLSPEEKNPILLPRHGRL
FT                 VELLLLREHLNHFHAGPQLMMSIIHRQFWIIRAKDVIRQFVKKCVTCARHK
FT                 PVTLQPMMGDLPSFRVTPSRPFQKTGVDYAGPFLIKPIQPRSTTTIKAYLA
FT                 LFICCCTRAVHLEIVSSLSTDAFLAALWRFVSRRGLPSDMYSDCGTNFVGA
FT                 DRELKEMLTLXLSAKHNQTIADXISTRGIXWHFSVPASPHFGGLWEAGVKS
FT                 VKFHLKRVIGSQRLTFEELTTTSARIEAILNSRPLCPESSDPSDLTTLTPG
FT                 HFLIGTALTSIPEPHLQDLQISRLSRWQLLQRITQDFWKRWSSEYLTRXQQ
FT                 RPKWIYGDHKISIGDLVLIKHENLPPMQWQLGRITQLHPGPDFRCSCRNSE
FT                 DSNRRT"
XX
SQ   Sequence 5581 BP; 1572 A; 1652 C; 1083 G; 1268 T; 6 other;
     ttttttggtc ccatcgtacc ggatactctc cagatattcg tgaacttatc gtgttttagt        60
     gtaataaaat ggcaccgtca gccatcgaca aagttgaacg tgaccgtgac actgttaaag       120
     ttaatcttac ctggttggaa aagcgtttca atgaccacgt cacagcgcct gccccagaag       180
     cgaagattcg acactacatc aaaacagtgg aacgtcaaga gaagattgaa gatttatttc       240
     agaaaatcgc atcaattgtt gaccacaaag acatggatcc tcactcagca gaatacatgt       300
     caatgaaaga tcgagccctg gaattggagc accagtttgc aacagttctc aagaccttcg       360
     ccgttcctgt catccccaca gctgcatcac cttcaactcc aagtacccta cagctaccta       420
     agttgaccct tcctaccttc gacggtgacc tcaacgagtg gatagctttt cgagatatgt       480
     tcacgaatgc agtccacaac aatgcaagtc taagcaaatc acagaaactt acatatctca       540
     aagcgcaact aaaaggtgaa gctgcacgac aggtccagtc cattacaata tccgacgcca       600
     attacgatat tgcatggaca caattgtcag atcgatacca aaacgaccgt gagattttct       660
     tttcaattat gaagcgattc catgaccaac cacttgttca gccacactca gcccatggca       720
     ttcgccagct actcgatgtg agtcgcgaat gcatccgatc ccttgatgtt ttgaagttgt       780
     caacgcacca ttggggtgcc cacctcatgt tcatcatcgc aaggaagatg gactacgcct       840
     ccaaggaatt gtgggagcag tctctcaaag acagcgcaat tccgtccctc caaacacttt       900
     acgactttct cgagcagcgt gcccgtgctc tctcagcgag ctccaccaac gcccagaagt       960
     cgtcaaagca agcaacccat agacacgaca atgagaagac ttcacgtccc aatggccagc      1020
     ccagtggtaa tcttgctcat ctcgtccagt cgccaccatg caaagtatgt tcggaaaacc      1080
     atccagtttt caaatgtcca accctaaatg ccatgtccgt acaagaaccg aagcggtgaa      1140
     gaaagccagc ctttgcttca actgcctcaa agacaaccat acaagcgccc agtgccaaag      1200
     ctcaaagacg tgcagaacct gcaacggtaa gcaccacact cttcttcatc gcggacggaa      1260
     ccctgacgcc tcccgatcgc aagaaaccag cagtcacacg gtccacctcg cccggtccgg      1320
     cactgccact gccacagcaa aacctgacaa gcaacacaac ggttcaaatg gtcaagtttt      1380
     cgccaccaca tgtcaagata tgaagaccaa gaatttagaa acacttctgg caatagcaag      1440
     agtcctcgtt cctgatcggt acagtaaatt gcaacccatc cgcattctca gcgatagtgg      1500
     atccaacacc cactacatca cggagagctg catcaaaaaa ctcggattac caagaacccg      1560
     atgcgtcgct tccgccactg gacttggtga aggagccctt actgtcgcca aaggatttac      1620
     atggctcaca gttagtcccc atttcaatcc atccatatca atgaaagtca aggcgctcat      1680
     cattcccaaa atcactggag atttgccctt gaaccccatc agtcagcacc aatggccaca      1740
     tctgcaaaac ctgaagcttg cagaccccag ttggcatcag cctctcccag tagacatgct      1800
     actgggggcc gagttcttct tcgaggtcac caaagacggc aagaagactg gcccacccgg      1860
     aagtcccgtc gcactcaact catcatttgg ttggatgatt ggaggagggt gcccggacta      1920
     caacaactct cttctccgca atgtgtccca tttgtccacg acagatcaca tgaccgaaga      1980
     gcagtccctt gaccaagcaa tgcgcaaatt ttgggaaatt gaagaagttc cacctcatca      2040
     tcgcaccctg accaaggagg aagaagcatg cgaagaacat ttcacctcca ccgtcaagca      2100
     aacaagtaat ggacaactaa tggttcacat cccgtacaag ttaccatgcc ctgtccttgg      2160
     ttcctccctg gaaattgcaa tacgaagact gaaacaaatt gaacgcagat tagccatgca      2220
     accccactac aaagatgaat atgccaaatt catgaaagaa tatttggact taggccacat      2280
     gactgaagtc gccccaccag acaaggacga caccaatcac tgctatattc ctcaccattt      2340
     cgtactcaag gccgactcca ctacaacaaa atttcgtatc gtgtttgacg cctcctccaa      2400
     gacgtcaaac ggcgtgtcgc tcaacgacac aatgttgatt ggacctacca ttcaagataa      2460
     cctgttcgac ctcatcctgc gctttcgtct ccacaaaatc gcattcaccg ccgacgtgga      2520
     aaaaatgtac agacaagtcc tcgtccgtcc cgaagatgca aacctgcaaa gaattgtgtg      2580
     gagagagaac agcaacgaac caatcaagca tttcatgttg cgtaccgtta cctatggtac      2640
     tgcagctgcc tcctttcaag ccaccagggc cctacaagaa gttggacaac tcaagaaaga      2700
     agagttacca aaagctgctg ccgtcatttg ccgcgacttc tacatggatg acctcatcag      2760
     tggagatgcg aatgaagaag atgcactcat cactcaatct caactcctcg aggctatgga      2820
     atcaggcgga ttcaaactcc gcaaatggtc ctcaaattgt gaaaccctgc tcaacgcact      2880
     acccgaagac ctacgagagt caaagtcaac tctgcccctt gacgtggatc ccactatcaa      2940
     gacgctggga atctgctgga accccaaaga agatgtcttt gtattcaaga tacaaccccc      3000
     tgcccacgac gatacacctc taacaaagag gaaagttctc tcagaactcg ccaaaatatt      3060
     tgaccctccc ggctggttat cacccgtcat catcaacgct aaactactga tgcaacccct      3120
     tcgcactctc caagttggat gggatactac gctacctgaa tccattcaac aacaatggat      3180
     atccctggtc cgtgacatgt caaccctagc aagactccag ttaccacgac actatctaca      3240
     cgactccgcg atcgccagtc ccacgctgga tgttccggtg gtcacaaata tgtctggtct      3300
     ctgtggtcaa tcaagtcagt taaaccccgc gatctccagt accatgctkg gcgttccggt      3360
     ggtggacact gactcttcga aacaaagaca tggtcacact ctccaatcaa gtactcctca      3420
     tcatcccacc caatccaaca attcatcatt gccagcttat tgtctcgctg gattttccga      3480
     cgcatcagaa cgagcctact cagccgtggt ctacttttgt gcataccaag aagataagat      3540
     ttcgacaagt ctcatcactt cgaaaactag agttgctcca gtcaagaccg tttctcttcc      3600
     ccgactcgaa ttatgtggag cmctcctcct ctctgaactc atgtcgtcag tccaatcagc      3660
     ccttcggatt ccactacatt ccgtcacagc ttggaccgac tcctccgtta ccctctcgtg      3720
     gattaagtca cacccctctc gatggaagac ctttgttgca aaccgtctca caaagatcca      3780
     agctcttgtt ccccctgaac gctggggtca tgtccgctcc gaggacaatc ctgccgactg      3840
     cgcatcccgt ggcataagtt catccgaact tatcaatcac tctctatggt ggaaaggtcc      3900
     acactggctc aagcatggaa ttccaattcc acatggagtt attggacccc atgatgatca      3960
     gtgcaaaaat gaagaacgga atcaaacaat ttgccatgca gtaatctcgt ctccaaatca      4020
     agtcctactt aacaagtact cgtcgttgga taaattgcta cgagtaacag caattttact      4080
     ccgattcgct accaattgtc gagccaaggt cagatccagt aacccgacca tgctccctct      4140
     caccccagtg gaactcaacc gttctctact ctgctgggtc cgaatcactc aagctgaagc      4200
     attcgcattg gagattaaat gcctgcaaca agataagaac atccctcttt caagtaaaat      4260
     tgtcaccttg aaaccgttca tggatcaaga ctctgtccta cgtgttggtg gtcgcttacg      4320
     ccactctcta ctgtccccag aagagaagaa ccccatcctc ctcccacgcc acggaagact      4380
     cgttgaactc ctcctcctgc gagaacatct caaccacttc catgctggtc cacaactcat      4440
     gatgtccata attcatcgcc aattctggat tatccgtgcg aaggatgtaa ttcgccaatt      4500
     tgttaagaaa tgtgtcacct gtgctcgcca caagccagtc acccttcaac caatgatggg      4560
     agacctccct tccttccgcg tgaccccaag tcgtccgttc cagaaaaccg gggtcgacta      4620
     tgcaggtccc ttcctaatca aaccaatcca accaagaagc actacaacaa tcaaagccta      4680
     ccttgccctc ttcatatgct gctgtacccg tgcagttcac ttggaaattg tcagctccct      4740
     gtcaactgac gcattcctgg cagcactctg gcgctttgtg tcgcgacgtg gacttccctc      4800
     cgacatgtac agcgattgtg gcaccaactt cgttggagcc gaccgagaac tcaaggagat      4860
     gctgaccttg ktcctgtctg caaaacacaa ccaaaccata gccgaccama tctcaaccag      4920
     ggggattcka tggcacttca gcgtaccagc aagtcctcac ttcggcggcc tatgggaagc      4980
     aggagtcaag agtgtcaagt ttcacttaaa acgagtgatt ggatctcaac gcctcacatt      5040
     cgaagaactt acgacaacaa gtgcgagaat cgaagcaata ctcaactccc gtcccctttg      5100
     tcctgaatcg agcgatccca gtgatctcac tacgttaacc cccggacatt tccttattgg      5160
     taccgctctc acctccatcc ctgaaccaca tctccaagat ttgcaaataa gtcgcctctc      5220
     ccgatggcaa ctcctccaga gaataactca agatttctgg aagcggtggt cctccgaata      5280
     tctcaccaga atscaacaac gacctaaatg gatctacggt gaccacaaga tatcaattgg      5340
     tgacctagtc ctcatcaaac atgaaaattt accccccatg caatggcaac tcggacgaat      5400
     cacgcaactc caccctggac cagacttccg ttgttcgtgt cgcaacagtg aagacagcaa      5460
     ccggagaact taagcgtccc ttggtgaagt tgtccccact tcccatcact tccgcatcgg      5520
     atcaagccgt ctcatccaca ccacaataaa attgaaaatt ggcatttcaa ggccggcgga      5580
     a                                                                      5581
//
ID   BEL-5_FoCa-LTR repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-581
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2596-2596 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 581 BP; 161 A; 113 C; 74 G; 230 T; 3 other;
     tgtttcgtct taacatgatt aatgcattat gaatttgact tattatttgt atgtatttta        60
     acttatgatt tcttatgcat tttactttat gatgattgaa ctaatctcaa ttccatgatt       120
     tgactaatat aattagctat ctttttatgt aaacttacct ttttcctctt tactcaagtc       180
     agtatatgta cgttacacaa gaattgtgtc tcaagtcgcc agtttgtcgc tggacttttg       240
     aatgtataat atcgttttat cagttcattg tcgtgtcctt taaagttcaa atattttcct       300
     ctctttgcgt tccttctcta catttctatt ggttaactga ctatttaagt gtgacgtaca       360
     taaacttata aatacacctc gaactcaagt tcacctkgtc agtcgctcag tatcawtcgg       420
     tcattttcca tgtaataagt atttctaaac gtagtaaatt atctgaccca agaaagtaac       480
     caagtctcaa ttcacctcct catttacttc aactttgtcg acaacttgtg catcttacca       540
     tccctgcata aagttstaaa atagtgttgc actcacgaac a                           581
//
ID   BEL-5_LH-I  repbase;    DNA;    INV; 5415 BP.
XX
AC   ADOQ01001613;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_LH_;
KW   BEL-5_LH-LTR; BEL-5_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5415
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001613; Positions   17292   11878.
XX
CC   Positions [4326-4898] - Integrase core
CC   'CCTTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..4716
FT                 /product="BEL-5_LH-I_1p"
FT                 /translation="MSSPSDDLVQAQHDLFGLLSRSYDNMRKSGEANITLG
FT                 LLEARLQTLEGYWSKFVTRHERLLQEYGDDLYEHEYVTKDLMFKADMSYHT
FT                 QKGKYLDDIRAMRGPGQAAVAAPAADVAPAAAVAAAAPAAPKLPRISIPQF
FT                 SGQYEDWPAFRDLFSSLVISNSSATPVEKLHYLKISLKEEAEQVTRQLPTT
FT                 DANFERTWRALKTHYENKRLLARSYISRLLSLPKMKGESAAELRKIYHCVQ
FT                 TTVGSLEGIGRPLTRSDDLCVQLITELLDSVSRREWETQLSKTTEPPSLDE
FT                 LLVFVGQRMRTLESLTTPKSNAGSAKANSSTPRQKNALQVRKQESQRGRCF
FT                 LCNQDHYVRQCDSYLSKTAAERKQFASSNELCVNCLGKHKLTECPSRKSCL
FT                 SCNERHHSTLHDAYASVAVVKTHLVRTKKIAMSMLLQTARVRVKDRHGVDH
FT                 VVRALVDAGSETSLVTESLIQRLRLPRSRSAFAVFGVCGKRNGVSRGFVDL
FT                 QISPREGDLSLSVSALILPRITLYESGFRADPTAWPHLNGITLADPDFLEA
FT                 ESVDILLGVDIYGSLLRTGARTSEPDQPAAQQTALGWVISGPVGPADSPDR
FT                 TRTMQCRIEEDLASLVRNFWQLEELPTGPVPLTPTEQECEDIFRRSHRRQA
FT                 DGRYIVRLPVVAPLPDLAATKRAASRVLTGTEKRFARDDRLRQMYVDFMRQ
FT                 YEDLGHMTPVRADIAAGDRVSYLPHHGVLREASSTTKLRVVFNGSTALPSG
FT                 DSLNRSLLVGQNLLPPLADVLLKWRLHRYVLASDVEKMYRQILVHPEDRDL
FT                 QRVLWRYHPLDEVTEYRLNTVTYGLACAPFLAMRTLRQLADDEAENYPLGA
FT                 RALRGEVYMDDVLTGASTLEEACELQRQLARLCMTGGFPLRKWSSNNSVLL
FT                 AGVPAEHRMQLELRDWRPHETQGTLGLRWHPATDEFSFAVPEATLVDVTKR
FT                 SVLSFTARLFDPLGWLAPVVVRAKISFQATWLLGLNWDDPLDEAAGRQWHA
FT                 YAEELPQLECLRVPRWLDVASSVDDAEVHGFADASERAYAAVLYIRIGCGD
FT                 SWRTSLISAKTKVAPLKTVSLPRLELCAASLLAKLTSQVCATLGLNRIPIH
FT                 LWSDSTVALGWIRGHPTRWKTFVANRVADIQTRVPDALWHHVPGLENPADC
FT                 ASRGLSPGELVKHPLWWQGPPWLRTAPSTWPCDVATPDEDSWPEAKTLIHA
FT                 ARTAPAPVEEPDELLRFSSLRRLLRVTAWCRRWLHRRPAAGRELTVDELGE
FT                 ARLTWIRLVQAGAYKADLKALLQYLPLPTSSSLLRLSPFLDAEGLMRVGGR
FT                 LKHSLLAYDERHPVILPGDSHLVRLMESSHRCSLHGGVQMTLGAVRQRYWI
FT                 PRGRAVVKRCLRRCVTCVRWRAAVPQQLMGSLPRDRVTPARPFLNTGVDYA
FT                 GPIQLRTSKGRGQRSYRHLLPFLFVCPLGRSTSKRCRTTPPTRSWRPCGDL
FT                 WHVVVCVTRSEVTAGQTSSVPTPGCGPSSLRAARNCAGSSDNWRRSKFVGD
FT                 LTLRLRRTSAAFGKPR"
XX
SQ   Sequence 5415 BP; 1050 A; 1605 C; 1599 G; 1161 T; 0 other;
     ttagctggtc cttcgagccg gatatccgcg tcgccggtgc cggtaaaatt tgagtgagtg        60
     cggtgacgtg actgtgacgt tcgtcgacga tctttcggtg agcgcacctg ccagataggc       120
     atgagtagcc cgtcggacga cctcgtgcag gctcagcacg acctttttgg acttctctct       180
     cgatcctacg acaacatgag gaagtctgga gaagccaaca taacactcgg gctcctggaa       240
     gcccgcctcc agacattgga gggctactgg agcaagttcg tcactcgcca tgagcggctg       300
     ctccaggagt acggagacga cctctacgag cacgaatatg tgacgaagga cttgatgttc       360
     aaggccgaca tgtcgtacca cacgcaaaag ggcaaatatc tggacgatat ccgcgcgatg       420
     cgtggtccag gccaagcggc ggtcgccgcg cccgctgccg acgtcgcgcc cgctgccgcc       480
     gtcgcggcag cggctcccgc cgctccgaag ttgcctcgca tctccatacc acagttctcc       540
     ggccagtacg aggactggcc cgcatttcgt gacctcttct cttcgctggt gattagcaac       600
     agttcagcca cgccggttga gaagctccac tatttgaaaa tcagcctgaa ggaggaagcg       660
     gagcaggtta ctcgccaact gccaacgact gacgccaact tcgagcgtac ctggcgggca       720
     ttgaagacgc attacgagaa caagaggctc ctagcgaggt catacatctc gcggctcctg       780
     tcgctgccaa aaatgaaggg tgagtcagcc gctgagctcc gcaaaatcta tcattgcgta       840
     cagacaaccg tcgggtcttt agaggggatc ggtcgcccct tgacgcgtag tgacgatctt       900
     tgtgtccaat tgatcacgga acttctcgat tcggtgtcgc gccgggaatg ggaaacgcag       960
     cttagtaaga cgacggaacc gccgtccctc gacgagctgc tcgtattcgt tggccagagg      1020
     atgcggaccc tcgagtcgct gactaccccg aagagcaacg ctggctcagc taaagcgaac      1080
     tcgagtactc ctcgtcagaa aaacgcgtta caggtgcgca agcaggaaag ccagcgaggc      1140
     cgctgctttc tctgcaacca ggatcactac gtgcgtcagt gcgattcgta tctcagcaag      1200
     acggctgccg aacgaaagca attcgcgtcg tctaatgaat tgtgcgtgaa ctgcctcggt      1260
     aagcacaagc ttaccgaatg tccgtcgcga aaatcgtgcc tgtcgtgcaa cgagcgtcat      1320
     cattcgacct tgcacgacgc ctacgcctca gtcgcggttg taaaaactca tctcgtgaga      1380
     acgaagaaga tcgcaatgtc aatgctgctg cagactgctc gcgttcgagt gaaagatcgc      1440
     cacggtgtcg accacgtcgt gcgggcactg gtcgacgcgg gatcggaaac gtcgttggtg      1500
     acggagtcac tgattcaacg tctgcgattg cctcgctcgc ggtcggcttt cgcggtcttc      1560
     ggagtctgcg gcaagaggaa cggggtatcg cgcggttttg tcgatctgca gatctcacct      1620
     cgagaaggcg atttgtcgtt gtcggtctct gcgttgatct tgccgcgaat aacgttgtac      1680
     gagagcggtt tccgagcgga tccgaccgcc tggccacacc tgaacggcat cacactcgcc      1740
     gacccagatt tcttagaagc cgagtctgta gacatcctcc taggagtcga catttacggc      1800
     tccctcctcc gaactggcgc gaggacgagc gagcctgatc agcctgcagc acaacagact      1860
     gcgttaggat gggtaatctc cgggccagtc ggccctgctg attctcccga ccgcacgcgg      1920
     actatgcaat gccggatcga agaggacctt gccagcctgg tgaggaactt ctggcagctg      1980
     gaggaactgc caaccggtcc tgttcctctc actcccaccg agcaggagtg tgaggatatc      2040
     ttccgacgct cacacagacg acaagcggac ggtcgttaca tcgtgcggct accagtagtt      2100
     gctcctctgc ccgacttagc agctactaag cgcgccgctt cccgcgtcct gacgggcacg      2160
     gaaaagcgat ttgcgcgaga cgaccgactg cgtcaaatgt acgtagactt catgaggcag      2220
     tatgaagact tgggtcacat gacaccggtg cgagctgaca tagctgccgg agatcgtgtg      2280
     agctacctgc ctcaccacgg agtcctgcgg gaggctagtt ccaccacgaa gcttcgcgtg      2340
     gtgttcaatg gctcgactgc gcttccgtcc ggcgattctc tcaaccggag tctactggtg      2400
     ggccagaacc tgctgcctcc cctcgccgac gttctcttga aatggcgact tcatcgctac      2460
     gtcttggcct cggacgtaga aaagatgtat cgccaaattc tggtccatcc tgaggaccgg      2520
     gatcttcagc gagtcttgtg gcgataccat cccttagacg aggtgacgga atatcgtcta      2580
     aataccgtga catacggttt ggcgtgcgct cccttcctgg cgatgcgcac tctccgccag      2640
     ctggccgacg acgaggcgga gaattatccc ctgggagctc gagctcttcg aggggaagtc      2700
     tacatggacg atgtcttgac cggcgcctct accttggagg aggcgtgcga gctgcagcga      2760
     cagctggcca gattgtgcat gacgggcggc ttccccctgc gcaaatggtc gtctaacaat      2820
     tctgttcttt tggctggcgt ccctgctgag catcggatgc agcttgaact gcgggattgg      2880
     cgaccgcacg agactcaggg aacgctcggt ctgcggtggc acccagccac tgacgagttt      2940
     tccttcgccg tcccggaagc tacgctggtc gacgtcacaa agagatcggt gctctcgttc      3000
     acggcacgcc tctttgatcc tcttggctgg ctggcacctg tggtcgtgag agccaaaatc      3060
     tcctttcagg ctacttggtt gctgggactg aactgggacg atccgctgga cgaggctgcc      3120
     ggacgacagt ggcatgccta cgcggaggag ctccctcaac tcgagtgtct tcgagttccg      3180
     cgctggctgg acgtcgcatc gtcagtcgac gatgcggagg tgcacggctt cgccgacgca      3240
     tccgagcgtg cctacgctgc ggtgctctac atcaggatcg gctgcggcga ctcttggcgg      3300
     acgagcttga tatcagccaa gaccaaggtc gctcctttga agacggtgtc tctgccgcgg      3360
     ctggagctgt gcgccgcctc tctcctggca aagctcacct ctcaagtctg tgccacgctc      3420
     ggcctgaatc ggattccgat ccacctgtgg tcggattcca cggtcgctct gggatggata      3480
     cgcggtcatc caactcgatg gaagaccttc gtggccaacc gtgtagcgga tatccaaacc      3540
     agagtcccgg acgcgctgtg gcatcacgtg cccggactcg agaatcctgc cgactgcgcc      3600
     tctcgcggat tgtcgcccgg agagctggtg aaacatcctc tctggtggca agggccgccg      3660
     tggctccgga cggctccatc gacatggccc tgtgacgtgg cgacgcccga cgaggacagc      3720
     tggccggagg cgaaaacttt aatccacgcg gccaggactg cgcccgctcc cgtggaggag      3780
     cctgacgagc tcctacgatt ctcgtcgctc cgtcggctgt tacgagtgac ggcctggtgt      3840
     cgtcgatggc ttcatcgaag acctgccgcc ggacgcgaac tgactgtcga tgagctggga      3900
     gaggctaggc tgacctggat ccgtctagtc caggctgggg cttacaaggc cgacctaaaa      3960
     gctcttctgc aatacttacc tctgcccact tccagctccc tcttacgttt gagtcctttt      4020
     ctagatgctg aaggcctaat gcgtgtgggt ggccgattga agcactcgct cctggcctac      4080
     gatgagcgac acccggtcat ccttcctggc gactctcact tggtccgtct gatggagtcc      4140
     agccaccgct gctcactgca tggcggggtc cagatgacac ttggagcggt ccgtcagcgc      4200
     tactggattc cacgcggcag agccgtcgtc aagcggtgtt tgcgccgttg cgtgacctgt      4260
     gtgcgatggc gggcggccgt tccgcaacag ctgatgggga gtctgccgcg ggatcgagtg      4320
     actcctgcac ggcctttcct caacactggc gtggactacg ccggccccat tcaactgcgg      4380
     acaagcaagg ggcgtggtca gcgctcctac aggcatttat tgccgttttt atttgtctgt      4440
     ccactagggc ggtccacctc gaagcggtgt cggactacac caccgacgcg ttcctggcgg      4500
     ccttgcggcg atttatggca cgtcgtggtc tgtgtcacac gatccgaagt gactgcggga      4560
     caaacttcgt cggtgccgac gcccggttgc gggccttctt cgctgagggc agccaggaac      4620
     tgcgccggat cgtcggacaa ctggcgacgg agcaaattcg ttggagattt aaccctccgt      4680
     ctgcgccgca cttcggcggc atttgggaag ccgcggtaaa atccttaaag caccatctgc      4740
     ggcgagtcct gggtgactct accttgacct tcgaggaaat gagcaccctc ctcgctcagg      4800
     tggaagcctg cctcaattct cgtccgctcc aagcgttgtc cgatgatcct gaggacttgt      4860
     cggctttgac gcccggccac ttttctggtg ggcggaccgt tgacggccat gcctgagccg      4920
     tcgctgacgg agctgcctgt caaccgtctg actcgttggc agcttctgca gcggatgcgc      4980
     gatcacttct gggagcgctg gtcacgcgaa tacctgcatt ccctcgtcca tcgtccgaag      5040
     tggttgaagg gggtggccga ctaccgagtt ggacgcctgt gcctcatccg gaacgagaat      5100
     acgccgccga cgcgctggcc gctcgcgcgc atcgtgcaag ttcatcccgg agaggatggg      5160
     catattcgcg tggtcaccgt tcggactgca gcgtcgacat tcaagcggcc gatagtaaaa      5220
     attgtcttgc taccggtctg cgacgaccag gtagacgagg aaccgcttga atagcgtttc      5280
     aagcggtctc ctcaactatg tatatatctg tctatatatt aatttgccct atgtaattaa      5340
     taaaatctcg tttatttctg ttagcggttg aatgagcatg tcgcccaagg aacgactcgg      5400
     gcgaggcggg cggga                                                       5415
//
ID   BEL-5_LH-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   ADOQ01001613;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_LH_;
KW   BEL-5_LH-I; BEL-5_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-378
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001613; Positions   11877   11500.
XX
SQ   Sequence 378 BP; 88 A; 102 C; 101 G; 87 T; 0 other;
     tgttcgggat aaagcaagcg acggagatag agcgcgaggc cgtgtctctc tttcccgctc        60
     tcgttgcgaa ccgacgcgcg cgcgatgaga actagagccg gccttcgcat tgcgataaca       120
     cagcggcgag cgtaaacatg ctcgagctgg agcaaacagc gagaacaata ctcgctgtta       180
     ttgctatctt ctgtttaatt aacagattcc tttcgaagac caagggaagg gccaaggctt       240
     ataaggcgcg cgaacggagc gcgcagtagt agtcgctctt acgaatctcg attctttgtc       300
     gggcagtcga cagagcttgt ctcggagttc cgatcctaac agtccctcac tctctcgcta       360
     attgtcctct cgcgatca                                                     378
//
ID   BEL-5_MoPha-I repbase;    DNA;    INV; 5530 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5530
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1132-1132 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..5346
FT                 /product="BEL-5_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSEALSGQLMRQHSIERALENFKKIGRNNLTPAKIRS
FT                 RAASLKDLWRAYQDGHVTLTQVIPVPTQATLDYFSKTQFDKTEEVYNATLD
FT                 YMMDCLEDLEPVVSQHNQSNETVHSIHDASSLSLMHLPSIDMPPFDGNYAD
FT                 WETFRDRFTSLIIQNKDLTDFSRMHFLASALKGRARESIASLAITANNFKI
FT                 AWRTLSGRYESKRRLLSFHLSALLDLPPVTRESATELQLLCDKVNIAISSL
FT                 QKLDRTPSELWDDFLVYLTSKKLDSNTRKAWTLHTNQAASPSTFEVLSRFL
FT                 DSRIRALEECQQNPNSKATTKSASSARVHVATASDSATLTCPLCKSRHFIN
FT                 ACPQFTAKNACQRRELVKRFKRCFNCLSTRHSASECPSKYSCRLCDKKHHT
FT                 TLHIESETSSGPATVTSQTAQASPSVEHADEINSLLTSAKPGMTAQVLLAT
FT                 AWVNLKVASGRSATVRALLDQGSEATFISENVAQLLRAKRIRMPVSISAVG
FT                 GTRVGTVQHAASVIISPRVSNTPALETTALILPSLTSYAPKRVSEPYCLAH
FT                 LADLSWADSKPTSSDPIQIIIGADLYGDIIQAGVRKGKTGQPFAQNSIFGW
FT                 IISGPLETTSVASRYTDYFSANSRNSAHLTVHHCSSLDSLAGEIKRFWEIE
FT                 EVPRSPSLTPQEDICESHFRATHSRQQDGRYIVRLPFKRDPPIEIGSSRRS
FT                 AERLYNTLLRRFRLHPELEKEYDKFMREYEQLGHMRRALPPLDSLQQHVHI
FT                 PHHPVIREDSATTRLRVVFNASCVTSNGSSLNDHLLAGPKLQADLPTILLQ
FT                 WRHFKFVCTADIAKMYRQILVDQRDVDYQRVIWKGEQNEPVEYQLLTVTYG
FT                 MTCAPFLALRVLQKLIDDDGQRFPLAIPILRGQIYVDDVLFGGDDIEFVRQ
FT                 SRDHLVGLLRSGKFELRKWASNSQELLDDIDPSDHGLACNKQIAADDRVKV
FT                 LGIVWNPVRDIFQVKVSLLTVIPRSKRSILSTIAKLYDPLGWVTPATISAK
FT                 IYMQQLWRLHITWDEDIPEPLLSKWISIYSKLSFLNDLQLSRWTGVHSNIS
FT                 YVELHGFADASTLAYAASVYLRVISDYGSVTISLLAGKSKVAPLAPLTVPR
FT                 LELSAALLLTRLMTFVLKSLAMPSVPCVCWTDSTIVLTWVRAHPSRWKTFV
FT                 ANRVNAIQSQLPDAEWHHVPTSDNPADCASRGLPGDELIRHDLWWQGPSWL
FT                 RAPREDWPSEPTSQTMDAGIEERIVALHSETSASWDLATRYSSWPRLVRIT
FT                 AYLFRFLKACRRSNVDPPPLSSPNKSLSCLEFRSAKTFWLKCIQAELFSDE
FT                 ISSLSKGNQISPKNKLTALRPFLDRDGVLRVGGRLRQAPLPYTVKHPVLLA
FT                 SHHLVHLIVLQAHSRVLHGGLQLTLSTLRHDFWIIRARSLVKAVIHKCIVC
FT                 CRERAAIPVQLMGDLPPMRVSVPSRPFSHCGVDYAGPIKVRSATGRGITAR
FT                 KAYIALFICLATRAIHLELVGDYSTPAFLNAYLRFCSRRGLPSDMYSDNGT
FT                 TFVGAERELRSAYQSAMRDPNFQNKIATDGVSWHFIPPSAPHFGGMWEAGV
FT                 RSVKHHLRRILGEHTLSFEEFTTLLCKIEACLNSRPVAPLSDSYDDYEILT
FT                 PGHFLIGSALTVPPEPSLLHLRENRLSRWQLVRHITERFWRVWTSDYLNTL
FT                 QQRGKWRKVQANIKIGQMILLRNATLPPCKWELGRVTQIHPGPDGLVRVVT
FT                 VRTATSEYKRPITKLCLLPIENVTPSNDDCTVGSV"
XX
SQ   Sequence 5530 BP; 1278 A; 1499 C; 1282 G; 1471 T; 0 other;
     tagttttggt ccttcgagcc ggatcgcgag tgttggtgga ggataacaca ttacttcagg        60
     gacttgatca tcaatttcat catgtcagaa gccttatcag gtcaactgat gcgacagcat       120
     tcaattgagc gggcattgga aaacttcaaa aagattggcc gcaataatct aacgccggcg       180
     aagattcggt cacgggccgc ttctctcaag gatctctggc gcgcttacca ggatggtcac       240
     gtcaccttaa cgcaggtgat tccggttccc actcaggcaa cactggacta cttctccaag       300
     actcaatttg ataaaactga agaagtgtac aatgccaccc tggattacat gatggactgc       360
     ttggaggatc tcgaacctgt cgtgagtcaa cacaatcagt cgaatgaaac tgtccattcg       420
     attcatgacg catcctctct ttcgttgatg catctgccgt ctattgatat gccgcccttc       480
     gacggaaact acgccgactg ggaaacgttt cgcgatcgct tcacttccct cattattcaa       540
     aataaagatt taacggattt tagtcgcatg cattttctcg cgtcagcatt aaaaggccgc       600
     gcaagggaat ctatcgcgag tctagccata actgcgaaca atttcaagat tgcgtggcga       660
     acgctgtcgg gacgatacga aagtaagcga cgactccttt cgttccatct atccgcgcta       720
     ctcgatttac cccctgtaac tcgggaatcc gcaacagaac tacagctctt atgtgacaag       780
     gtcaacatcg ccatctcttc gttacaaaaa ttagaccgaa ccccgagtga gttgtgggat       840
     gactttcttg tgtacttaac gtcaaaaaaa ttggattcga acacacggaa agcatggacg       900
     cttcacacga atcaagcagc ttcaccatct acattcgagg tattaagtcg attcctcgac       960
     tctcgcattc gcgctttaga ggagtgtcaa caaaatccta actcgaaagc aacaacaaaa      1020
     tctgcatcgt cggcgcgcgt tcatgttgcg acggcatccg acagcgctac gttgacttgt      1080
     ccgttgtgca agtctcgtca tttcataaat gcctgtccac agtttaccgc aaaaaatgct      1140
     tgtcagcgtc gcgaactcgt aaagcggttt aagcgttgtt tcaattgtct aagcactcgc      1200
     cactctgcgt cggaatgtcc tagcaagtac agttgtcggt tatgtgacaa aaaacatcat      1260
     acgacgttac atatcgaatc tgaaacgagc tctggtccag caacagttac gtcgcaaacg      1320
     gcgcaagcat ctccatccgt cgagcacgcg gatgaaatta attctttgct cacctccgcg      1380
     aaaccgggca tgaccgctca ggtgctttta gctaccgctt gggtcaacct caaagttgct      1440
     tccggtcgat ctgcgacggt aagggccttg ctcgaccagg gctctgaagc cacgttcata      1500
     tccgagaacg tagcgcaact gttgcgcgcg aagcgcattc gaatgccggt ctcgatttct      1560
     gccgtcggcg gaactcgcgt tggtacggtt caacatgccg cctctgttat tatatctcct      1620
     cgcgtctcta atactccggc tctcgaaacg acggcactca ttctcccctc gctaacgtct      1680
     tacgctccga aacgtgtgtc tgaaccgtat tgtctggcgc acctcgctga tctgtcatgg      1740
     gctgattcga agccaacaag ctccgatccg attcaaatca ttatcggcgc cgatctttat      1800
     ggcgatatca ttcaggcggg cgttcgcaag gggaaaactg gccagccgtt tgcgcaaaac      1860
     tctatttttg gctggattat ttccgggcct ctcgaaacaa cgtctgtcgc gtcgcgatat      1920
     accgactatt tctctgcgaa ttcgcgaaat tccgctcatc taaccgttca tcattgctcc      1980
     tctttagatt ctctcgccgg cgagattaaa cgattctggg agatcgagga agttcctcga      2040
     tccccatcgc taacgccaca ggaagatatt tgcgagtctc attttcgcgc cacgcattca      2100
     cgtcaacagg acggccgata tatcgttcgg ttgcctttta aaagagatcc tcccattgaa      2160
     atcggtagtt cacggcgctc tgccgaacgt ctgtacaata cattgctacg tcgttttcgt      2220
     ttgcacccgg aattagaaaa ggaatacgat aaattcatgc gtgagtacga acagctcggc      2280
     catatgcgac gggcgttacc ccctctcgac tcacttcagc agcacgttca catccctcat      2340
     catccagtca ttcgggagga tagcgctaca acgcgcctgc gcgtcgtgtt caacgcgtcg      2400
     tgtgtcacgt caaacggatc gtcattaaac gatcacttac tcgctggtcc gaaactgcag      2460
     gcggatctac ccactatatt attacaatgg cgtcatttca aatttgtttg cacggctgat      2520
     atcgcaaaaa tgtatcgaca aatcttggtc gaccaacgag atgttgacta ccagcgtgtt      2580
     atctggaaag gagaacagaa cgagcctgtc gagtatcagc tgcttaccgt cacctacgga      2640
     atgacgtgcg ctccttttct cgcgcttcgc gtgcttcaaa aattaatcga cgacgacgga      2700
     cagcgatttc cgctcgcaat cccgatcctg cgtggtcaaa tctatgtcga cgacgtcctg      2760
     ttcggcggtg acgatattga gttcgttcgg caatctcgcg atcatcttgt cggtctactg      2820
     cgttccggca aattcgagtt gcgcaaatgg gccagcaatt cccaggaatt gcttgacgac      2880
     attgatccgt cggatcacgg cttggcgtgt aacaaacaga tcgcagccga cgacagagtc      2940
     aaagttcttg gcattgtctg gaacccggtt cgcgatattt ttcaagtaaa ggtatctctc      3000
     cttacggtca tccctcgaag caaacggtca attctttcaa ccattgcaaa actttacgat      3060
     ccattaggct gggttactcc ggctacaatt tcggctaaaa tatatatgca acagctatgg      3120
     cgcctacaca taacctggga tgaggacatt cctgagcctc ttctcagcaa atggatatca      3180
     atctactcca aactttcttt cctaaacgac cttcaactat cccggtggac gggcgttcat      3240
     tcgaacatct catatgtcga attacacggt tttgccgatg catccaccct cgcttacgcg      3300
     gcttccgtgt atttgagggt tatttccgat tatgggagcg tcaccatctc attgcttgcc      3360
     ggcaaatcaa aggtagctcc ccttgccccc ctcaccgtcc ctcgccttga gctgtccgcg      3420
     gcgttacttc tcactcgcct catgaccttc gtgttaaagt ctctcgcgat gccatccgtt      3480
     ccatgcgttt gttggacgga ctcaacgatc gtgttgacgt gggtacgcgc tcatccatcg      3540
     cgttggaaaa cgtttgtcgc caaccgagta aacgcgattc aaagtcagct gcctgatgcc      3600
     gagtggcatc acgtgccgac ttcggataac cccgcggact gtgcgtcgcg agggctgccc      3660
     ggtgacgaac tgatccgtca tgacctgtgg tggcaaggac cttcctggtt acgagctcca      3720
     agagaggact ggccttccga gcctacctcc cagaccatgg atgctggtat tgaggaaaga      3780
     attgttgctt tacattctga aacgtctgct agctgggatc ttgctactcg atactcgtca      3840
     tggccacgat tggttcgcat tacggcatat ctcttcagat ttctaaaggc ttgtcgacgc      3900
     tctaatgtcg atccgcctcc cctctcctct ccgaataaat ctctttcctg cctcgaattc      3960
     cgctcagcca agacattttg gctcaaatgc atacaagccg aacttttttc agatgagatt      4020
     agctcgttaa gtaaagggaa tcaaatctct ccaaaaaata aattaaccgc tctgcggcct      4080
     ttcctcgatc gtgacggggt gctccgcgtg gggggccgtc ttcgccaggc tccgctccca      4140
     tatactgtga aacatcccgt gttactcgca tctcaccatc tggtgcatct catcgtcctg      4200
     caagctcatt cgcgggtttt acacgggggc ttgcagctca ctctgagcac cctccgccat      4260
     gatttctgga tcattcgcgc tcgaagtctg gtcaaggctg taatccataa atgtatcgta      4320
     tgctgtcggg agcgggccgc gattcccgtg cagctaatgg gagaccttcc ccccatgcgc      4380
     gtctcggtac cttctcgtcc cttttctcac tgtggcgttg attatgccgg gccgatcaaa      4440
     gtgcgttcgg caaccggtcg cggtataacg gcgagaaaag cttatatcgc tttatttatc      4500
     tgtttggcca cgcgagctat ccatttagag ttggtcgggg attactcgac tccggcattt      4560
     ctcaatgcat atttgcgatt ctgttctcgc cgtggtctcc cgtctgatat gtactcggac      4620
     aatggaacga cattcgtggg cgctgagaga gagcttcgat ccgcttatca atctgctatg      4680
     cgcgacccca attttcaaaa taaaatcgcg actgatggtg tttcctggca cttcattcct      4740
     ccgtctgcac cgcatttcgg cggaatgtgg gaagcgggcg tccgcagcgt gaagcaccat      4800
     ctgcgtcgca ttttaggtga acacactctc tccttcgaag agttcaccac tcttttatgt      4860
     aaaatcgagg catgtctgaa ctcgcgtcca gtcgctccat tgtccgattc ctacgacgat      4920
     tatgagatcc tcactccggg gcattttcta ataggctccg ctctgaccgt cccgcctgaa      4980
     ccttcgctgt tgcatctgag ggaaaatcga ttgtctcgat ggcagctcgt tcgtcacata      5040
     accgagcgtt tctggagggt atggacaagc gattacctca acactctgca gcagcgaggc      5100
     aaatggcgaa aggtccaagc aaatataaaa atcggacaaa tgattctctt acgcaatgcg      5160
     acgttgcccc cgtgtaaatg ggaactcgga cgggtcacgc aaattcaccc tggccccgac      5220
     ggtttagtgc gcgtcgtgac cgtgagaacc gcgacttcgg agtataagcg tccgattacg      5280
     aagctatgcc ttctaccgat cgagaatgtg acgccgagca atgacgattg caccgttggc      5340
     agtgtttagt tttagtttaa gctgcgccgc tactgtatat tctctgttcg tattactatt      5400
     aagattcgtt tgttcaactt cgctttcttc tgttcaatat gttatgttcg tctcgaattt      5460
     gaatctgtat tgtattgcgg agcgaataat taagcatcat tttgaaacgt gcgtttcaag      5520
     gcggccggta                                                             5530
//
ID   BEL-5_MoPha-LTR repbase;    DNA;    INV; 861 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-861
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1151-1151 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 861 BP; 173 A; 223 C; 219 G; 246 T; 0 other;
     tgtttggaat tcgagattcg gggagaatat tcgagttcta caacatatga tttccatcat        60
     cttttgttta tcgttggtaa agcgtcgtgc cagtggagtg cgatcgtata ccaatatttc       120
     gattgttgcg agccgtgatg ctcgagctcc gcggacgcgt cggcgctgca tgatcgagtc       180
     gtgatcgtgg gatgctgcat gtatttccta catgctacac tccctcctgt tatgagggag       240
     agtctttgga gcgatcgctt gctgagcgac gttcagaatg ttttctgcaa acgctctcgc       300
     ctctcaaact ttcgctctcg ttttttctcg atcgtgcagc tcgccgttcg acgtgtcgtt       360
     aaggaacact gatcactcgc ctgatcatta gtgcgggtta atcgctttgt ttgtgacgtt       420
     taatgtgtga cgcaaagatt aggaggatcg acgggtgatt cgctcgcgag agtacgtacg       480
     cttcgcggat ctcagtgcgg cgccctcggt caagatctcc aatccgacgg ggcgtaccgg       540
     cttacgctcg gccagatctc cgtcgcgccg acgaacagca tttcgataac gtattcacca       600
     cgaagatctc cgcacgtcta gttactccgt cgctcctccg ggtctgcgca acgttaatta       660
     tatggtggaa ttgatgtgtg aatcaaacaa atacattttc ttgtcagtac aagtctgagt       720
     aatctgtcaa ttatttctct gtgcactcgc ccagtcctcc agcggattca cggattcgcg       780
     taacgagcac tccgcgctca ttactgagcg gtgccggcat ctcgcgctat cgatcgcatt       840
     cgctcgattc tcgcgcgaac a                                                 861
//
ID   BEL-5_PPo-I repbase;    DNA;    INV; 2135 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   BEL-5_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2135
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2961-2961 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           332..1750
FT                 /product="BEL-5_PPo-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MEKAKGLISLQEDRFERIQKAQTNYLNTPESRITTSY
FT                 VETRLESLERLFSSFTTVHEEISSFIPREQRRTVEYYSLDIFGNLEEFYIE
FT                 YKSCLKEKLCELNKLSINNTLSPCRTSTNTEIKLPTIQIPTFSGNYTDWPS
FT                 FRDLFTSIIHKNTTLDDVQKLHYLKSLVNGEAAQLLRNIQITNDNYTKAWD
FT                 TLHKRFENKRYIVNDIFKKLFSLKSIARESSYHLKQLLYTTLDCLNSLKNI
FT                 GVNTDLWGDILVYITVSKLDATSLRLWEQHISAEIKDMPSFQQLCQYIEMR
FT                 FKSLEMVEDHEKECTSELKHIHPTVSASSLQCSFCNGQHYIFQCKQFVRQT
FT                 HENRTNFVRANNLCFNCLIPNHSVTVCLRDTCCNICKRNHHSLLHPGVKAT
FT                 PEEQTSAETHTYKNETISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT                 XXXXXXXXXXXXXXXXXXILLCPLRLMF"
FT   CDS           1729..2133
FT                 /product="BEL-5_PPo-I_2p"
FT                 /note="retropepsin."
FT                 /translation="MPVKAYVLKEITNYVPSHKCNIIDWPELQTIALADPT
FT                 FSLPKNIDILLGAEAYAKIIDDGLLRSSVGMIAQKTHLGWILSGTMSRKQG
FT                 KNKRATRNTKENSPTGAKINNGVAENRRSFEFNTPWWAVKNQVLGGR"
XX
SQ   Sequence 2135 BP; 698 A; 345 C; 372 G; 569 T; 151 other;
     aatggtcctt cggcagccaa attgtatcgg tctgagtgta ttgcgctgga cttgaatgtt        60
     ccgagtcggt taatttagaa ggttattaca atttcaaata ttttaggcta ttcgagtcag       120
     taaaacaaat ttatgtttgt atgtttggga cttagacaag gttgatgttg atgagtagaa       180
     attgttggtt aatttagaat ttgtttacgg tcaactgtct gccacttgtt atgtcttagt       240
     tattgttatt gtatttgtca agcctcttag ttttgttata ttgattctta ttttaaaatt       300
     agttgtttgt ttgatagctt gcatttttaa catggaaaaa gccaaagggt tgataagtct       360
     tcaagaggat agatttgagc gcatacagaa ggctcaaaca aattatttaa acaccccaga       420
     gtcccgaata acaacaagtt atgtagaaac acgcctagaa tctttggaaa ggttgttttc       480
     ttcattcacc actgtacacg aagaaatatc ttcttttatt ccgcgggaac aaaggcgtac       540
     cgtcgaatat tattctttag acatatttgg aaatttagaa gaattttata ttgaatacaa       600
     gtcatgttta aaagaaaagt tgtgcgagtt aaacaaactg tcaataaaca atacactcag       660
     cccgtgtaga actagcacaa atacagaaat taagttaccg acaatccaga tacccacatt       720
     ttcgggtaat tacacagact ggccatcgtt tcgagattta ttcacttcca tcatacataa       780
     gaatacaact ttagacgatg tacagaaatt gcattatctg aagtctcttg tgaacggaga       840
     ggcagcacaa ctgctacgaa atattcaaat tacaaatgac aactacacca aagcctggga       900
     tacattacac aaaagatttg aaaacaaaag atacattgta aacgatattt tcaaaaaatt       960
     atttagttta aaatcaatcg cccgagaatc gtcttaccat ttaaagcaat tgctgtacac      1020
     aaccttagat tgcctaaatt cattaaaaaa cattggagtt aatacagacc tatggggtga      1080
     catattagtt tatataaccg tttcgaagct agacgcgact agccttcgat tgtgggagca      1140
     gcatatatct gcagaaatta aagacatgcc gagtttccaa caattatgtc aatacatcga      1200
     aatgaggttt aaatcgttgg aaatggtcga agatcatgaa aaggaatgta cgagtgagct      1260
     aaaacatata catccgacag tatctgcgtc ttcactccag tgcagctttt gtaatggaca      1320
     gcattatatt tttcaatgca aacagtttgt cagacaaact catgaaaata ggacaaattt      1380
     cgtaagggca aacaatttat gtttcaactg cttgattccg aatcattccg ttactgtatg      1440
     tctaagagac acatgttgca acatttgcaa acgaaatcat cactctttat tacatcccgg      1500
     ggtaaaggca acaccagaag aacaaacgag tgcagaaaca catacatata aaaatgaaac      1560
     catttccnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1680
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnac attttactat gcccgttaag      1740
     gcttatgttt taaaggagat aacaaattat gtaccatccc ataagtgcaa cataatagac      1800
     tggccagagt tacaaacaat tgccctagca gatcccacat ttagtctacc aaaaaatata      1860
     gacatcttgc taggggctga agcatacgca aaaattatag atgatggtct gttgagaagc      1920
     tcggtaggga tgattgcaca aaaaacacac ctaggttgga ttctgtcagg aacaatgtca      1980
     agaaaacaag gtaaaaacaa aagggcaaca agaaacacaa aagaaaacag tcccacgggc      2040
     gctaaaataa ataatggagt agctgaaaac cgacgaagtt tcgaatttaa tacaccatgg      2100
     tgggcggtga agaatcaagt tcttggtggg cggaa                                 2135
//
ID   BEL-5_PPo-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-233
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2962-2962 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 233 BP; 44 A; 46 C; 55 G; 88 T; 0 other;
     tgttggcgtc gtttttgccg cgcactaaca gatggcgctg tggcgagacc gtgttgtatt        60
     aacacacgat gttgagaaga atgtctcgcc acacatatac tttccgggtc cccgagactc       120
     tttggtgttt tggtagtagt tctctccgtt ctcattgttg ttggtgtttt gtacttttcg       180
     ttcgttcgtt tacttgttca atttttgaac aaagttttgt aggattacaa aca              233
//
ID   BEL-5_SI-I  repbase;    DNA;    INV; 5407 BP.
XX
AC   AEAQ01019002;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_SI_;
KW   BEL-5_SI-LTR; BEL-5_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5407
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01019002; Positions    6337     931.
XX
CC   Positions [4392-4973] - Integrase core
CC   'ACGGG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2292..3206,3210..5063)
FT                 /product="BEL-5_SI-I_1p"
FT                 /translation="MDEYLQKGHMELVPLNTIEEKNACFIPHQPVLRPDNI
FT                 TTKLRVVFDASARTDNNNSLNDLLMAGPNLQAELLHILLRFCIYNFVITGD
FT                 IAMMFRQITVAKADRSLQLILWRKEEEGSLEAFSLSTVTYGTKCVPFLVMR
FT                 CLKQLAEENGDQFPLAQRALVSDFYMDDVLTGSDKLEEAISLQGQLTDLLA
FT                 KGQFPLNKWRSNDNRILKHLAQEGLTEKLLVIHKDAPLKTLGVLWNHREDV
FT                 LQYNARETTSSRITKRSVLSEISQTYDPLGLLGPVMIVAKIMMQQLWTLNL
FT                 QWDESLPQELHSKKNYQASWGQLRDLKIPRQSKDRGTTSRIIKHGFSDALE
FT                 RAYGACLYAVTRTLDGKLQSQLLCAKSRVAPLKIITIAKLELCAALLLAKL
FT                 YKTVQETLGNKIADVRFWSGSTIVLGWIRTCPSTLKTFVANRVSQIQILGS
FT                 QYVWHHVPSAENPADILSKGTTIEELQTNRLWWHGPWWLQEENSWPEQPSS
FT                 VRELPEKKTVVSFVTTIQASEVLPSVSTFKRLFRIVAYCYRFGARHNSKVE
FT                 TGALTVAELTKAETAVVKVVQREAFAQEYRDLQKGQPVKDNSQLAALDPFL
FT                 DSRDLICVGDRLQHSRLTEEAKHPIVLPSKHHVTRLIFKDEHVRLHHCGAE
FT                 QLLASVRQKYWVLSGRKVARKITRSCVHCFRWRPSSLQVKMGNLPEARVAN
FT                 YVRPFAITGVDYAGHIKIKESRRRGRVHSSKAYIALFICFHTKAVHLELVT
FT                 DLTTESFLAALPRFTGRRGICSQLHSDNATNFVGAERELREIYDFLRGQNE
FT                 VIQAELANQRIEWYFIPPTVPNFGGLWESNIKSMKKHFYVVTKGLTLTFEE
FT                 CYTLLVGIEAVLNSRSLTPISSDVKDLSVLTPSHFLIGERLSQPVERDHLQ
FT                 EPDNRLKIWQHLQKVRQDF"
XX
SQ   Sequence 5407 BP; 1701 A; 1075 C; 1318 G; 1313 T; 0 other;
     tttttctggc gcccaacgtg gggcgcgagt ggaatcactg gaattcgtaa aagcattgga        60
     ggattcgcaa gcagaatcgt agcaaccgct acataacctc gcatcgtaga attgcataac       120
     ggcaagatgg cagagttggg acagagatga gtaggttgaa ggccacacac gctcaactga       180
     aaggccaggt aactcgagtc aattaattcc tgacaggaaa tcaagaaata acttgtgagc       240
     aagcacaagc gcgattggac aagctgcaag agctgtggca cgcgttcaat gagaatcaga       300
     cgcagatcga aatcctcaag gcaggagagg atggagatgt ggaagcaata gcacaacaag       360
     aactcgcaga acaagagatt ttcgagtggg catattacag agcagtggat gaggctcgcg       420
     cgataatagc ggcgacccag gcggctgcgc aaccagcagc actgctattg caagacgcac       480
     gacagggcgt acagtaagac attgaatcgc aaggtaatat taatattaaa ttacctacat       540
     tgaagttgcc tatctttgca ggcgaatacg atcagtggat gttattcaag gacgcgtttc       600
     aatccttgat tcatgataat cgcaagctgt cggatgtaca gaagtttcag taccttcgaa       660
     gcacattgaa ggacgaggcg ttgcaagtca ttagtggact gaatacgtca acggaaaatt       720
     accttgttgc atgggactta ctgaagagtc attacgagaa caaaaaacta atcataaata       780
     gtcatttatc gaagttatta gagttccctg cggtaacaaa agataagcat gtatccctca       840
     agcagtttat tatgcatctt cgcatgcatc taaaggcctt acaagtttta ggccagccaa       900
     cggaccaatg ggatacgatc atcatattct tagcaagtta gattattcgt ctcaacgagc       960
     ctgggaagaa gagattggac aacaagagca ggatcacatg cctacaattg acgaattcct      1020
     caaatttctc aacgagaggt gtcgtacttt ggaaatgtta gatactaata gcaaccggcg      1080
     tgagtcagtt ccaaaattta atgtaaacaa aaagatagac aaaagagtag cactggcaac      1140
     aatgtcacat gcatgttcaa tgtgtaaaga atctcatagt ttgtttaatt gttcggagtt      1200
     tctaaaatta tcggttcaaa atcggctcgc ggctgttaag ggaaaacagt tatgcataaa      1260
     ttgctttaaa tctggtcatt acgcaagaga atgtagagca tcaaaatgtc gtaagtgctc      1320
     aaagccccac aactcgttat tgcacttcga acacgaagat tcttcatcaa aagaacctcc      1380
     gaataaacct gcggaaaaga aggaagcggt tgttatgcac tgtgtgcaaa ggggcaagca      1440
     agattcaaaa acgcaaacaa gatcgaagcg ctcaaaggaa aacagctcag ggtgttttgg      1500
     ctacagcgca agtgtatatt tgggacggac aaggtaaaag gcagacttgt cgcgcactgt      1560
     tggatccagg atcacaatcc cacttcataa cggaagattt ggtaaggaga ttgcaattgc      1620
     tttgcaaggc aacatcgttt tgtattacta gcctcgagcg caatacaacg aaaatagagc      1680
     agaccgctca aatccagata gaatcgcaga atactgcgtt caaggccgca ttgaaatgtt      1740
     tggtggtcca gaaaatagcg gagagaatac ctctgttcaa gattgacaag aaactcgtcg      1800
     gcattccaga aaacctcaaa ttggtggatc cttcatttga tcaaccaagg ccggtagaca      1860
     ttctaatagg ttgcggtctg ttctggtctt tattaagcgt tggtcaaatt acaaacggca      1920
     gaaggcatcc tgtctggcaa aagactcagc tcggttgggt cttcagtgga gaatttgtcg      1980
     gggagcaaac agcttcgaca ggttcagtac catgtttggt aacaaatcaa aacttaaatg      2040
     aaagtcttga gagattttga actcaagagg aggtaccgga gagcagacag cttagtggtc      2100
     cggaagctta ttgtgaagat tatttcaaaa gcactacgac aagagatatt acaggcagat      2160
     ttgttgtgcg actaccaaaa aaagaaggag tcgtgctagg ggagtcaagg cagcaagcag      2220
     ttagaagatt tcgtgcgtta gaacgtcgtt ttcgaagaca gccttccctt aagagagaat      2280
     atacaaaatt catggacgaa tatttgcaga aaggccacat ggagttagtg ccattaaaca      2340
     caatagaaga gaaaaatgca tgctttattc cacatcaacc agtgttgaga cctgacaaca      2400
     ttacgacaaa actcagagtt gtattcgatg cctccgcgag gacggacaac aacaactcat      2460
     taaacgattt gctaatggct ggacctaatt tacaggctga gttgttacat attctcttaa      2520
     gattttgtat ttacaatttt gtcattacag gtgacatcgc tatgatgttt cgtcagataa      2580
     ctgttgcgaa agcggatcgt agtctgcagc ttatcctttg gagaaaggaa gaagaagggt      2640
     cattggaagc attttcgttg agcaccgtaa catacggaac caagtgcgtt ccatttttgg      2700
     tgatgcgctg cttgaagcag ttggcagaag agaacggcga tcaattccca ttggctcaaa      2760
     gggcgttagt atcggacttc tacatggatg atgtcctaac tggtagcgac aaattggaag      2820
     aggccatcag cttacaagga cagcttactg atctgctggc aaagggtcag tttcccttaa      2880
     acaaatggcg atccaacgat aatcgaattt taaagcattt ggcgcaagaa ggcctaaccg      2940
     aaaagttgct agtaatacac aaggatgcgc cgttgaaaac attaggagtt ttatggaacc      3000
     atcgagagga tgttctacaa tacaacgcga gagagacgac atcaagtcgt ataacgaaac      3060
     gcagcgtact ttctgaaatc tcacaaacat acgatccatt aggattactt gggcctgtca      3120
     tgatcgttgc aaaaatcatg atgcaacaat tgtggacgct caacttgcaa tgggatgaaa      3180
     gcctgccgca agaacttcat agtaaatgaa aaaattatca agcatcgtgg ggtcagctcc      3240
     gcgatttgaa gatacctcgt cagagtaaag acaggggtac cacatcaaga atcatcaaac      3300
     atggcttcag tgatgcattg gagcgtgcgt acggagcatg tctgtatgca gtgactcgca      3360
     ctttagatgg taaacttcaa tcgcagctgc tctgcgccaa gtcgagagta gccccgttga      3420
     agatcataac aatcgctaag ttagaattgt gtgccgcatt gttgctagct aagctgtaca      3480
     agacagtgca ggaaactctt ggaaataaaa tagcagacgt acgattttgg agcggctcaa      3540
     ccattgtgtt aggttggatt cgcacgtgcc ctagcacctt aaaaacattt gtagcgaaca      3600
     gggtttcgca aatacaaatt cttggatcgc aatacgtttg gcatcatgtg ccgtcagcag      3660
     aaaatcctgc ggatatttta tccaagggaa caacgattga agaactacag actaatcgat      3720
     tatggtggca tggcccgtgg tggctgcaag aagagaattc atggcctgag caaccaagca      3780
     gcgtgaggga gttaccagag aagaaaactg tagtcagttt cgtgacaacg atccaagcct      3840
     cagaagtgtt accttcagtc tcaacattca agcggctgtt tcgaattgtt gcatattgtt      3900
     atcgatttgg agctcgacat aactcaaagg tcgaaaccgg agcattgaca gtagcagagc      3960
     ttacaaaagc agaaacagca gttgtgaaag tagttcagag ggaagccttc gctcaagaat      4020
     acagagattt acaaaaaggt caaccagtca aagataacag tcaactagca gcattggatc      4080
     ctttcttaga cagcagagat ctcatatgtg ttggagatcg gttgcagcat tcaaggctaa      4140
     cggaggaagc gaagcatccg atcgtgttgc catcgaagca tcacgttacc agattaattt      4200
     tcaaagatga acacgtgcgt ttacatcact gtggagcaga gcagttgttg gcatcagttc      4260
     gacagaaata ctgggttctt tcgggaagaa aggtggctcg gaagataacc cgctcttgtg      4320
     tacattgttt tcgatggcga ccaagtagcc tgcaggtcaa aatgggcaat ttgcctgagg      4380
     caagagtcgc taattacgtt cgtccctttg ccataaccgg agtggattat gccggccata      4440
     tcaagatcaa ggagagtagg cgtcgtggga gagtgcatag ttccaaggcc tacatagcat      4500
     tgttcatctg cttccacact aaagcagtgc accttgaatt agtgacagat ctaacgactg      4560
     aatcattttt ggctgctttg cctcggttca cagggcgcag aggtatttgt tcgcaattac      4620
     attcagacaa tgcgacaaac tttgtcggag cagaaaggga gcttcgtgag atctacgatt      4680
     tcttgcgagg gcagaatgaa gtaatacagg cggagctcgc caatcaaagg atcgagtggt      4740
     actttatacc accgacagta cccaatttcg gaggactctg ggagtcaaac ataaagagca      4800
     tgaagaaaca tttctacgtc gtgaccaaag gactcacatt gacatttgaa gagtgctaca      4860
     ctttactggt aggaattgaa gctgttttga attcgaggtc gcttactcct atatccagcg      4920
     acgttaaaga cttgtcagtc ctaactccat cgcatttctt gattggagaa cgtttatcac      4980
     aaccagtgga aagagaccat ttacaagagc cagataacag actaaagatt tggcaacatt      5040
     tacaaaaggt tcgtcaagat ttttagcgac gttggcaaag agagtaccta gtggagtagt      5100
     aacgcaggaa caagtggata aatggcagag agaatttgta accaggggtc ctagtcttgt      5160
     tgaaggaaga taatgtgccg cctttgcagt gggctctggg aagagttact gaggtccatc      5220
     cagctagcga caacgtcgtt cgtgtcgtta cggtacaaac ggccagtggg aaattcaaga      5280
     gagcagcaag gaatttatgc cctctacctt atgaagactg tataggttga cacataaatt      5340
     cacacaacat aacacatacc caacacgcga taaggtttga aagggagcct ttcaaggcgg      5400
     gagggat                                                                5407
//
ID   BEL-5_SI-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   AEAQ01019002;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_SI_;
KW   BEL-5_SI-I; BEL-5_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-297
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01019002; Positions     930     634.
XX
SQ   Sequence 297 BP; 88 A; 67 C; 47 G; 95 T; 0 other;
     tggtaaggct agataactat tgattaataa tttatttaat tttgtctgtt ttatattgca        60
     taatttgttc aggtataaaa tttaatttgc gcgtacgcga cctcgccacg ttgaatagag       120
     actgcgcgcc ctctcttaga tcgcttacgc gactcttaca caagcaaccg ttcacacaca       180
     cacttactta cactctaagt ctcgatgtac cacgttttcg tgccttgaaa taaataattt       240
     tggtaaaaac aaatactcgc aattcactga gggctaacaa gtacgctctc ctaacca          297
//
ID   BEL-5_SpEx-I repbase;    DNA;    INV; 6062 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6062
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6887-6887 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           532..5730
FT                 /product="BEL-5_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MEALSNLQFNLQSTISKARSNFKKSPKERLTSSYIET
FT                 RLENLEANWSAFFETHRKIVSSVKSIEYEKSEYNLKNVYETTEELFTEYKA
FT                 ELREALKKIVCSDSSAKVLESSAKGSKETCLVKLPKIELPMFTGSYSEWIS
FT                 FRDLXKSLIHNNSALDDVQRLHYLKSHLSGEAEGLLRHIPITSNNYATCWS
FT                 KLENRYNNKKYLANCIIKRFMSQRNIVAESSSAIKELLDTSNECLHALQNL
FT                 GIMVEHWDVIVIYVLSLKLDTESRKQWEMKISDCSDELPTMNQFKSFLEQR
FT                 FRSLEFLDNKGQGRQSNRTVPVKSLHVSTTLCICCQDNHKLANCKRFAGLD
FT                 IEKRRNFVQTNGLCYNCLGANHSVYACRQSSRCHICKRKHHSLLHLKNVSK
FT                 SGGDSNNPDQVVESSGSAVTTSNQSNSTNIVSCFANSHSQILLATALIVAE
FT                 SKSGTAIVLRSLLDQGSQASFVTESAVQLLGLKRIPTKGSISGIGCDQEKS
FT                 SISLNSMVLIKVKSRIDPSFIITVKAYVLKKLTTILPERKVMANVLTTISS
FT                 LALADPSFDTPNKIDLLLGAEVYSQILLEGLFKGSSSQLIAQNTRLGWILS
FT                 GQVGEINQSETCHNTVVTLHSTLTDENTLLKKFWELEAEPKXLNGKTYLTP
FT                 EEQKCEEIFKSTTKRDESGRYIVHMPFRSSDPACKYGGSKDVALKRFLTLE
FT                 KRFLRNPDFKAQYSAVIKEYIDLNHMDIVQDRDKESAVYLPHHAVIRNDKS
FT                 TTKLRIVFDASCVGSNGVSLNHDLMVGPRLQLDLRHIIMRWRREPICLVAD
FT                 IVKMYRQVRVCDDHTDFQRILWRENPDDEIQVLRHLRVTFGTSSAPYLAVR
FT                 SLQQLAQDEGAEFPLAKNRVLSDFYMDDLMTGCQTIEEGVEIYKQITELLK
FT                 RGGFQLQKWASNNKELLKLIEDGQHISQTQGNMELKTDAISKILGLTWDKD
FT                 NDEFVYTIQLNELDLPVTKRKVISDIARLFDPLGWLAPTIITAKVFIQRIW
FT                 MTGIEWDAELPAPLLKEWLDFRENLRNLVKFRLPRWINSSKDNRVLELHGF
FT                 SDASNVAYAAVVYVRIIDREGHIHTTLVTAKTKVAPVKQVSIPRLELCGAV
FT                 LLAKLLEEVATTLEVPKQHLYAWTDSSVVLAWLSSHPSRWKTFIANRVSEI
FT                 LTIMDRSQWSHVVSSENPADCASRGVSPSECNDLQLWKKGPVWLQNEKIDY
FT                 NRANIQGTTLEERKIKTKCHATAVEFDDSLLTRFSKFSRLVRVIAYCRRFL
FT                 RMKELECNRIKITTWLTTKELNEAVLTCVKLCQLQSFSVEIESVKKNRKLN
FT                 KNSKLTSLSPFLDDDGILRVGGRLHRASIDDNMKHPILIPHKSHFTNLLIA
FT                 EAHERTLHGGPQLMLNYLRSKYWILNAKTLVRQHVHKCVTCIRHCTQTHQP
FT                 MMGQLPKSRVSVQKPFQCSGVDYAGPISVRSSKGRGHHSTKGYICLFVCMS
FT                 TRAIHLEVVSDMTSQSFLASFKRFVARRGRVLDLWSDNGTTFVGSAKELRQ
FT                 LFNAERSMVASEIADFLSMNGTTWHFIPPHAPNFGGLWEAGVKSTKYHLKR
FT                 IIGTSTLTFEEMTTVLAQIEACLNSRPICQLSNNPEDACPLTPGHFLVGEP
FT                 LVTVPDINYENSSVSNLKRWHLTQKMLQNFWRRWSLEYLTQLQHRYKWTNC
FT                 KPEPEIGDVVLVKEDGLPPARWLYGIVTNKHPGLDNITRVVTIRCKNSEIK
FT                 RPVSKLIMLPVTT"
XX
SQ   Sequence 6062 BP; 1836 A; 1103 C; 1334 G; 1786 T; 3 other;
     aagtggtcct tcggaaccgg atgaaggact ggtgtgcatc gtcattacgg tgtcgtaggg        60
     ttgcacggtc aacctgccgc gagtgtgacg tcagcgcaag cagcatcggc gggccgtata       120
     tgttaggcgc gtacgcgtgt atgtactagt ggtacacaac ggtcggcggt ggtgctgctg       180
     gttccggttg gcgtgagcgg ctgcggtgca gggggaggag taccccgcat atcattgcga       240
     cgagtaaaag tgagtgagtg gtgaagtgtt gtgatacgaa gacaaactgt gagtacttta       300
     taatttcaaa gtgatacata tcgagactta acaatatttc aagcaattta gaacttatta       360
     acttagaaaa ttttactgtg catggactta gaataatttc aataaaaagt gaactacggg       420
     gaacctatgc ccgattttgc agcgaagttt aataagttaw aagacttgtg attttttacg       480
     tgttggccag ggacttagtt aaaattagtg aaagacttta tttagttcga catggaagcg       540
     ttgagtaact tacaatttaa cttacaatct accatcagta aagcaaggtc taattttaag       600
     aaatcaccta aggagcgact aaccagctct tatatagaaa ctagactaga aaatttagaa       660
     gctaactggt cagccttttt tgaaactcac aggaaaattg tgtcatctgt taagtccatt       720
     gaatacgaaa aatctgaata taacttaaaa aatgtttacg agactacgga agaattattt       780
     accgagtata aagcagagtt gagggaagca ttaaaaaaaa ttgtttgttc cgatagttca       840
     gctaaagtgc ttgaatcttc tgcaaagggt tctaaggaga catgtcttgt gaaattacct       900
     aaaattgaat tgcctatgtt taccggaagt tattctgaat ggattagttt tagagacttg       960
     twtaaatcct taatacacaa taacagtgca cttgacgatg ttcaaaggtt acactatttg      1020
     aaatcacatt tgtctggaga ggctgaaggt cttttacgtc atattcctat tactagtaat      1080
     aattatgcaa cttgttggag caaattagag aaccgctata ataacaaaaa gtatttagcc      1140
     aattgtataa ttaaacgatt catgagtcaa aggaatattg tagcagaatc ttctagtgcg      1200
     attaaggaat tattagatac ttccaatgaa tgtttacacg ctttgcaaaa tttaggtata      1260
     atggttgagc attgggatgt aatagttatt tatgtattga gtttgaaact agatactgag      1320
     tcacgtaaac aatgggagat gaaaattagc gattgttcag acgaattgcc tacaatgaac      1380
     cagttcaaat cttttcttga acaaagattt cggtctttgg aatttttaga caacaaaggt      1440
     caaggtcgtc agtccaatcg tactgtgcca gtcaaatcac ttcatgtatc tactacattg      1500
     tgtatatgtt gtcaggataa ccacaagctt gctaattgta aaaggtttgc cggtctcgat      1560
     attgaaaagc gtcgtaattt tgtccaaaca aatggtttat gttataattg tctaggggca      1620
     aatcactccg tatatgcatg ccgccagtct tctagatgtc atatatgtaa aaggaagcat      1680
     catagtcttc ttcatctcaa gaacgtctcc aaatcaggtg gtgatagtaa taacccggac      1740
     caagttgtcg aaagtagtgg gtctgctgtt accacgtcaa accagagtaa ttccacaaat      1800
     attgtaagtt gttttgctaa tagtcatagc caaatattat tggctactgc actgattgtg      1860
     gcggaatcaa agagcggtac tgctatagtg ttaagatccc tgttagacca gggatctcag      1920
     gcttcttttg tgacggagtc cgcagtccag ctcttaggtc ttaaaagaat accaactaag      1980
     ggttcaattt caggtatagg ttgtgatcaa gagaaatcat caatttcact aaattcgatg      2040
     gttctcatta aggttaaatc acgcattgac cctagtttta ttatcacggt taaggcttat      2100
     gttttaaaga aattaacgac tattttaccg gaaaggaagg ttatggcaaa cgttttaacc      2160
     acaatttcgt ctttggcttt agcagatcct tcgttcgata cgccgaacaa gattgatttg      2220
     cttttaggcg ccgaagttta tagccagatt ttgttagaag ggttattcaa aggttcatcc      2280
     agtcaactca tcgcacaaaa cacaagacta ggatggatct tatctggtca agtaggtgaa      2340
     atcaaccaaa gcgaaacatg ccacaacacc gtcgtcacac tgcattctac tctcacagat      2400
     gaaaatacac tccttaaaaa attctgggag ctagaagctg agcccaaagk ccttaacggt      2460
     aagacgtact tgaccccaga agagcagaag tgcgaagaga tattcaagag cacgactaaa      2520
     cgagatgaat ctggtcgcta tattgtgcac atgcccttca ggtcaagtga tcctgcttgt      2580
     aaatatgggg gatcaaagga cgtcgctctc aaacgctttt taaccttaga aaagcgattt      2640
     ctaaggaatc cagacttcaa ggctcagtat tcagctgtta tcaaggagta catagatctt      2700
     aatcatatgg atatagtaca ggatagggac aaagaaagtg ctgtgtacct acctcatcat      2760
     gccgtcattc gaaacgacaa gagtacaaca aagttgcgca ttgtgtttga tgcatcatgt      2820
     gtaggcagca acggagtgtc tcttaatcac gatttaatgg tgggtcctcg tctacaactt      2880
     gatcttcgtc atattatcat gcggtggcgt cgtgaaccta tctgtctggt cgcggacatc      2940
     gttaagatgt ataggcaggt tagggtatgc gatgatcaca cagattttca gcgcatatta      3000
     tggcgggaga atccagatga cgaaattcag gtgttacgtc atttgcgagt aacttttgga      3060
     acatcatcgg caccttacct ggcagtaaga tcactgcagc agttagctca ggacgaaggc      3120
     gctgaattcc ctttagcaaa aaaccgtgtt ctttcagact tctacatgga tgaccttatg      3180
     acaggctgtc aaaccataga agagggagta gaaatatata agcagataac tgagttactt      3240
     aaacgtggag ggtttcagct tcaaaagtgg gctagtaaca acaaagaatt attgaaatta      3300
     attgaagacg gtcaacatat atcacaaaca caagggaaca tggaattaaa aactgatgct      3360
     atttcgaaaa tattaggttt aacgtgggac aaagacaatg acgagttcgt ttacactatt      3420
     caacttaatg agctagattt accagttacg aagcgtaagg ttatttcgga catagcacga      3480
     ctattcgatc cccttggatg gttagcaccg acaatcatca ctgcgaaggt gttcattcaa      3540
     cgaatatgga tgactgggat cgagtgggat gcggaactac ctgcaccatt gctgaaagaa      3600
     tggcttgact ttcgggaaaa ccttcgtaac cttgtgaagt ttcgtctgcc tcgttggatc      3660
     aactctagca aagacaacag agttttagaa ttgcatggct tctcagatgc atccaatgta      3720
     gcatacgccg cggtggtata cgttcgcatc attgacagag aaggacacat tcatacaacc      3780
     ttggtgactg caaaaactaa ggttgctcct gttaagcagg tatcaatccc tcgtttagag      3840
     ctctgtggag ctgtcttgct tgcaaaactt cttgaggaag tcgctacaac tctagaagtt      3900
     cccaagcagc acttatatgc gtggactgac tcatccgtcg tattggcgtg gttaagcagc      3960
     caccctagtc ggtggaaaac gttcatcgcg aatcgtgttt ccgaaatact taccattatg      4020
     gatagaagtc agtggtcaca tgtggtgtcg tcggaaaatc cagcagattg cgcatctcgg      4080
     ggggttagtc cttctgaatg taatgacctg caactctgga aaaagggtcc agtatggtta      4140
     cagaatgaaa aaatagacta taatagagca aatatacaag gaactacgtt agaagaaaga      4200
     aagataaaaa caaagtgtca tgcaactgca gtagaatttg atgatagtct attaactaga      4260
     ttttctaagt tcagtaggtt agtaagagta atagcttatt gtagaaggtt tctacgaatg      4320
     aaagaattag aatgtaatag aattaaaata actacttggc taactacaaa ggaattaaat      4380
     gaagctgtac ttacctgtgt caaactctgc caactccagt cgtttagtgt tgaaatagaa      4440
     tctgtaaaga agaaccgtaa attaaataag aatagtaaac ttacctcgtt gagccctttt      4500
     ctcgacgacg acggcatttt aagagttggc ggccgcttgc accgcgcttc tattgatgat      4560
     aatatgaagc atcccatttt gattcctcac aaatcacact ttaccaatct tttgattgca      4620
     gaggctcacg agagaacttt gcatggcggg ccgcaattga tgctaaatta cttaagatcc      4680
     aaatactgga tactcaatgc aaagactctc gttaggcaac acgttcataa gtgtgtaact      4740
     tgtattcgac attgcacaca aacacatcaa ccaatgatgg gtcagttgcc gaagtccagg      4800
     gtgtctgttc agaagccttt tcaatgcagt ggtgtagatt acgctggtcc aatcagcgtc      4860
     cgaagctcta aaggtcgtgg tcatcactct accaaaggtt atatatgctt atttgtctgc      4920
     atgtccactc gggctataca cctcgaggtt gtcagcgaca tgacttctca gagttttcta      4980
     gcgtctttta agcgttttgt agccagacgt ggccgagtat tggacctgtg gagtgataac      5040
     gggaccacat ttgttggtag tgcgaaagaa ttgcgacaat tattcaacgc tgaaaggtct      5100
     atggtagctt cggaaatagc tgatttcctg tctatgaatg gtacgacttg gcatttcata      5160
     cctccccatg ctccaaactt tggaggattg tgggaggcgg gtgtcaagtc cacgaagtac      5220
     catttaaaaa gaattatagg caccagcaca ttgacctttg aagaaatgac aacggtgctg      5280
     gctcaaattg aggcctgcct aaactcgagg cctatctgtc agctttctaa caatccagag      5340
     gacgcgtgtc cattgacgcc tgggcacttt ctcgtgggtg aacctctggt aacggtaccc      5400
     gatattaatt atgaaaattc gtctgttagt aatctgaagc ggtggcatct tacacagaaa      5460
     atgcttcaaa atttctggcg tagatggtca ctggaatact taactcaatt gcaacaccga      5520
     tataaatgga cgaattgtaa gcctgaacct gagattggag acgtagttct ggtgaaggaa      5580
     gatgggcttc cacctgctcg atggctatac ggtatcgtta caaataagca tccaggtttg      5640
     gacaatatta ctcgcgttgt aacaatacgg tgtaaaaata gtgagattaa aagacccgta      5700
     tctaaattaa ttatgttacc tgtaactact taatttttgt ttatcaccat attgttgaag      5760
     tttacatagt ttattttgcc ttacttatgc actgtttgtg aatctacttg aatgatattg      5820
     tatcgtttac ttgtttttac tgttgttttt gtatgtttag tacataaggg atgaacctgt      5880
     atatttcact tgtttttttt gttgtttatt gcatttgtgt tacataaagt atgttcttgt      5940
     attgtagact ttagtttagt aaggctttag tttagatttt tatgcattgt taaaaccaaa      6000
     ttaatttaag ttaatattgt catgttttgg ttgatggaca gtgccgtcca tggtgggcgg      6060
     aa                                                                     6062
//
ID   BEL-5_SpEx-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-226
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6876-6876 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 226 BP; 57 A; 46 C; 41 G; 80 T; 2 other;
     tgtctattct gtttacatca cttatatacg acaatgtcaa caatgtttta ccgktagtac        60
     cacaattcga taacagatga cgctgtgccg awacgtcatc attttacatc gcggtgttaa       120
     gattctccgt cgatacacta cctctgcagt tttatgtgca ataaattgtc ttactctgga       180
     cacgagtgtt ttattctctt gggagatatt tttgggacgt tgtaca                      226
//
ID   BEL-5_TrNi-I repbase;    DNA;    INV; 5966 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5966
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1030-1030 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           805..5964
FT                 /product="BEL-5_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADDLKALIHIRGTIKARITTFSKYLNNVQVIDLKVV
FT                 SKIQVDELQLKLTRLQSLLSQFDEVQGNIESLSSDPEQQVSEREVIEDKFC
FT                 SLIAQAQDYIQRYSKAHKENENNFEDNNSTKSSKLFNNVKLPTIDLPHFDG
FT                 DALKWLEYRDTFNSLINENECIPDINKFHYLRSSLEGGATVVIKSISFSAQ
FT                 NYKVAWELLCNRYNNTRLLINNHLKALFSFQSLAKESHKALRYMIDYFTRN
FT                 LRALSTLNEPTDAWDTLIIFMMTSKLDGATCRKWEEHRNSLYESPTLNDFY
FT                 TFLRNRADVLETVEFNKVDTSKFEKTSHGKEHKVTKSFVASNEKKGSKSCV
FT                 ICNKDHFLHECDKFKNMSLETRSSEVARFKLCSNCLRPGHRSTRCFKKGCQ
FT                 HCNSKHNTLLHALSDKNNEFSNLPGSSQGDSDNKNVSLSAVMPCQVLLCTA
FT                 QLEILEPKSKKSYTVKALLDSGSQSSFVSETLIRKLSLPVSEITPINILGI
FT                 NKNVNATAQKCNFRINSRINSFQLTVSCLVIPQITGKLPGVEINTSKLNLP
FT                 ADIELADPSFFSPSDIHVLLGVDVFWEIVHGRQIRLGRNKPTLQESKLGWL
FT                 ISGPTGRSSGPHIKACHFSQNIEASLSRFWDIEELPPVKKYFSKVEHFCEG
FT                 HFLENAKRTKEGRFSVKIPLSESPEGSLGDSYNIAKRRFFTIEKKLNKSTL
FT                 LKEEYKNFIHEYERLGHLSPINRPVFGYYLPHHAVIREHSETTRLRVVFDA
FT                 SCKTTSGKSFNDIQLVGPVVQDDLFSILLRFRQNAFVVTGDIEKMYRQIEV
FT                 DESQRHLQLIVWRDNVDQPLKVLQLNTITYGTASAPFLSTRCLLKLAEECN
FT                 NPDVANIIQHDFYVDDLNTGSNSRKELQQNLKEVICKLSEACLPLRKFRTN
FT                 VPDIFDDIPIINQSQDFCKESTVLGLKWSPQTDTLRFCSTLESVPKVTKRN
FT                 ILSTSSKLFDPLGLLSATIIIPKMLIQKLWLLKNGWDDPIPNNISNEWQEF
FT                 LSNLHFLSTLEVPRHVVGEAPINIEIHCFSDASQAAYGACLYLRSVNKIGN
FT                 VTVHLFCAKAKVAPLKPELTIPRLELMGALLGARLLTKVMQSLRLKGFDIS
FT                 RCMLWTDSTIVLGWINSEPKTLKTFVCNRIGEIRELTSKYEWRHVPTKDNP
FT                 ADLASRGVQPQHLIGNKLWWNGAPFLTQPEEEWPVHKVLHTILPETKVSLT
FT                 VQSEDNSSFNLFLTCSNLYKMQRVLAYILRFKENCKSKTNRIKGNLTVSEL
FT                 RTSLSMLGKMSQRESFKNEIQSLEKMGCINRKSRISSLNPFLDDNKVLRVG
FT                 GRIQRALVSYSKKHPIIIDSKHAFTKLLFKHEHLRLLHCGQTQLLSLIREE
FT                 FWPIGGRVLATQTIHNCVPCTRLKGKNVQPIMGNLPISRVNPAPPFETCGT
FT                 DFAGPFLISSRKGRGAKTSKCYLCIFVCFATKAVHLEVVSELSTNAFILCL
FT                 RRFISRRGKPQTIHCDNGKNFVGANNELGRMLRSANGSVTDFGVREGIDFK
FT                 FSPVYAPNFGGIWEAGVKTAKFHLKRIAGNTSLTFEELCTLFAQIEAILNS
FT                 RPLTPLSSDPSDFTPLTPGHFLIGRPLSSLPSPTTTKISINRYQQLERMRQ
FT                 HFWSRWSKEFLSELQQRVKWHRSCGSNVRIGDMVVVKDDQLPPMKWLLGRI
FT                 TKIYNGPDGICRVVDIATSKGIIKRALTKVCVLPTGDSRELLGTSASKGGE
FT                 "
XX
SQ   Sequence 5966 BP; 1753 A; 1133 C; 1275 G; 1805 T; 0 other;
     tttggtgacc ccgacgtgat cgcgaagata tatccgagaa atcgacgagt attgtatcgt        60
     cgcgacgaaa cgacgtctct gttcgcttgg cggccattgc accgcaagcg cgacggacag       120
     ttattgtgac ggtgtacaat atacctgcga tcgctgcatt ggagctcgtt caaggaagta       180
     gccatttttt tccttatatt tcaatttaaa attcgtaaaa tttattttat aattccgagt       240
     tcaacttgcc tcgctttgca tgcgaatata atggttttgc acacagattt caggcttgtc       300
     tgcacgtatt gtctgtctgc aaatatacct tatatgtgtt atggttctgc tcgataattc       360
     ttaggaatta gttgagtcat ttatcataca taacctgcat tcgtagtcat attgctcgct       420
     agcttgggtt tgtttatgca tctatataca gctagtgaca gcgttagcta ttcgaattgc       480
     agacggttgc tttgaataat aaggatatac gcacgaatgc gctaagcagt tagtttaaag       540
     gcatatgccg actatttcag ctgccggcac tgcgacagcc accagaatct acgagccacg       600
     agacggatca gcctgtccgg tgcacaagta cgctgagctt cgctacgtca tcgcggcgcc       660
     gggatcagct ggcgggcagt ttgcggtcgt tgacccgctt tacatagcta tagcggtgtg       720
     cacggtttgg cttttttcat attgctgtgt tctgcataac gcgttattcg ctagaagtta       780
     cgttagggta tttaacttat aactatggca gacgatttaa aggctttaat tcatattcgc       840
     ggtacgatta aagcgagaat tactactttt tcaaaatact tgaataatgt tcaagttatt       900
     gaccttaagg tcgttagtaa aattcaagtt gacgaacttc agttgaagtt aactagactt       960
     caatcgttat tatcgcaatt tgacgaggtt cagggcaata tagaatcatt atcttccgat      1020
     cctgaacaac aggtcagcga gagagaagta atagaagaca aattttgttc attaattgct      1080
     caagcgcagg actatattca acgttattcg aaggcgcata aggagaatga aaataacttt      1140
     gaagataata attctaccaa gtcgtccaaa ttattcaata atgtaaaatt gccaaccata      1200
     gatttgcctc atttcgatgg agatgcatta aagtggttgg aataccgcga tacgtttaat      1260
     tcattaataa atgagaatga gtgtattccc gacataaata agttccatta tttacgttcg      1320
     tcgttggaag ggggcgccac tgtcgttatt aaatcaattt ccttttcggc tcaaaactat      1380
     aaggtagctt gggagcttct ttgcaacagg tataataata ctagactttt gattaataat      1440
     catttaaaag cgttattttc gtttcaatct cttgcaaagg aatctcacaa agcattgcgt      1500
     tatatgattg attatttcac tcgaaattta cgagctctta gtactttaaa tgaaccaact      1560
     gatgcgtggg atacgttgat tatttttatg atgacaagta aactagatgg cgccacatgt      1620
     cgcaaatggg aagagcacag gaattctctg tatgagtcgc ctactcttaa tgatttttat      1680
     acatttctac gtaatcgtgc ggatgttttg gaaactgtag aattcaataa ggttgatact      1740
     tctaagtttg aaaaaacttc tcacggcaaa gaacataaag tcactaaatc ttttgttgcg      1800
     tcaaatgaaa agaaaggtag taagtcatgt gttatatgta ataaagatca cttcttgcat      1860
     gagtgtgaca agtttaaaaa tatgagcctg gaaacgagat cgagtgaagt agccagattt      1920
     aaactgtgct cgaactgtct ccggccaggc catcgttcca ctcgctgctt taagaagggt      1980
     tgtcagcact gtaattcaaa gcataataca ctattacatg cactgtcaga taaaaataat      2040
     gagttcagta atttaccagg tagctctcaa ggtgacagtg acaataaaaa tgtgtccctg      2100
     tctgccgtaa tgccttgcca agtgttactg tgtactgctc aattagaaat cttagaacca      2160
     aaatcgaaga agtcttatac cgttaaggcg cttctagata gcgggagtca atcatctttt      2220
     gtatcagaaa ctctaataag aaaattgagt ttgcctgtct ctgagattac tcctataaat      2280
     atattgggta ttaacaaaaa tgtaaatgca actgcacaga aatgtaactt tagaattaat      2340
     tctcgaatta attcgtttca gttgacagtg tcatgtcttg ttataccaca aattacaggt      2400
     aaattgcctg gtgttgaaat aaacacttcg aagctaaatt tacctgctga tattgagctg      2460
     gctgacccga gtttcttcag tccctccgat attcatgtct tactgggggt agatgtgttc      2520
     tgggagatcg tgcatggtcg tcagataaga ctcgggcgaa ataagcctac tcttcaggaa      2580
     tctaagttag gctggttgat ttccggcccg actggtagga gttctggacc acatattaaa      2640
     gcttgtcatt tttcacaaaa tattgaagct tcgttgtcta gattttggga cattgaggaa      2700
     ctacctccag ttaaaaaata tttctcaaag gtagaacatt tctgtgaagg tcattttctt      2760
     gaaaatgcaa aacgtactaa agaaggccgt ttctcagtaa aaattccttt gagtgagtca      2820
     cctgaagggt ctttgggtga ttcttataat atagctaaac gtcgtttctt tactatagag      2880
     aaaaaactta ataaatcaac acttcttaag gaagagtata agaatttcat tcatgaatat      2940
     gaacggttgg gtcatttatc acccatcaat cgtcctgtct ttggttatta tctgccgcat      3000
     catgctgtga tacgtgaaca tagtgagaca acacgtttgc gcgtagtttt cgatgcgtcg      3060
     tgtaaaacta ccagtggcaa gtcttttaat gacattcagc tcgtagggcc ggtggtgcag      3120
     gatgatttat tttcaattct gttgcgcttc cggcaaaatg cgtttgtcgt tactggtgac      3180
     attgagaaaa tgtaccggca aattgaagtg gatgaatcac agcgacactt gcagttaata      3240
     gtttggaggg acaatgtaga tcagccacta aaggttctgc aactgaatac aataacttat      3300
     ggaacagcct cggctccatt cctaagtacg cgatgtttgc taaagttggc agaagaatgt      3360
     aataacccgg atgtcgcgaa tattattcaa cacgattttt atgtagatga cttgaatacg      3420
     ggttcaaatt ctcggaagga gttacagcag aacttgaaag aagtgatctg taaactttcg      3480
     gaagcttgct tgccgttgcg caaatttcgt actaatgtac cggatatttt cgatgatatt      3540
     ccaataatta atcaaagcca ggatttctgt aaagaatcta cggtcttagg gttaaaatgg      3600
     tctcctcaaa ctgatactct acggttttgt tccacacttg agagtgttcc aaaggtgacc      3660
     aaacggaata ttctgtcgac ttcgtcaaaa ttatttgatc ctcttggact tttgtcggcc      3720
     actataatca ttcctaaaat gttgattcag aaattgtggt tgctaaaaaa cggctgggat      3780
     gatcctattc caaataatat ttctaacgaa tggcaggagt ttctatcaaa tctgcatttt      3840
     ttatcaactt tagaggttcc taggcacgtt gttggtgagg ctccaatcaa tatagaaata      3900
     cattgttttt cagatgcttc gcaagcagct tacggtgcat gtttatatct taggtctgtc      3960
     aataagatag gaaacgttac agtgcatctt ttctgtgcca aggcaaaggt agccccgttg      4020
     aagccagagc taacaatacc tcggctggag ctaatgggcg ctttattggg agctcgccta      4080
     cttactaagg ttatgcagtc gttacgtctt aaaggtttcg atatttctcg ttgtatgctg      4140
     tggactgact cgactatagt tttaggatgg attaattcag agccaaagac actaaaaact      4200
     ttcgtgtgta accgcatagg ggagattcgt gaacttacct cgaaatatga gtggcggcat      4260
     gtacctacga aggacaatcc agctgacctt gcgtctcgag gagttcaacc gcaacaccta      4320
     ataggaaata aattgtggtg gaatggtgcg ccttttttga cacaacctga ggaagaatgg      4380
     ccagtacata aggtgttaca tacgatacta cctgaaacaa aggttagtct gactgtacaa      4440
     agcgaagata attctagttt caatttgttt cttacttgtt ctaaccttta taaaatgcaa      4500
     agagttttgg cgtacatatt acggtttaaa gaaaattgta aatccaaaac aaatagaatt      4560
     aaaggcaatt taacagttag tgaattaagg acgtcattat ctatgttggg caagatgtca      4620
     caacgagaat cgtttaaaaa cgaaatccaa tctttagaga aaatgggatg tattaatcgt      4680
     aaatcgagaa tttcgtcttt aaatccgttt ctagacgaca ataaggtctt acgtgtagga      4740
     ggtcgcattc aaagggcact tgtatcctat agtaagaaac atccgattat tattgattcc      4800
     aaacatgcgt ttacgaagct tttatttaag catgaacacc tacgtctttt acactgtgga      4860
     caaacacaat tattgtcact aattcgcgaa gaattttggc ccatcggagg tagagttcta      4920
     gcaacacaaa ctatacataa ttgtgttccg tgtaccaggt taaagggtaa aaatgtacaa      4980
     ccaataatgg gtaacttacc tatctcgcgt gtcaatccgg ctcctccatt tgagacgtgt      5040
     ggcaccgact tcgccggtcc ctttctaatt tcaagtcgca agggtcgtgg tgcgaaaaca      5100
     agtaaatgtt acttgtgtat tttcgtttgt tttgccacta aagcagtgca tttagaggtt      5160
     gtaagcgaat tgagtactaa cgcattcatt ctatgtttac gtcgatttat ctctagacgc      5220
     ggtaagccac aaacaataca ttgcgataat ggcaaaaatt tcgtaggagc gaataacgag      5280
     ttaggcagaa tgctgcggtc cgccaacggc tccgtcactg atttcggtgt ccgtgagggc      5340
     atagatttta aatttagtcc ggtctatgca cccaactttg gtggcatctg ggaggctggc      5400
     gtaaagacgg ctaaatttca tttaaaacgt atagcgggaa atacaagcct aactttcgaa      5460
     gagctctgta ctctttttgc gcaaattgag gcaattttga actcgcgtcc gttgacacct      5520
     ttgtcatcgg acccttcaga ttttacgccg ttaacacccg ggcacttcct tatcgggcgt      5580
     cctttatcgt cattaccgtc tccaacaaca accaagatct ccataaaccg ataccagcaa      5640
     ctggagcgaa tgagacaaca cttctggtct cgatggtcaa aagaattctt gtctgaactt      5700
     cagcagcgag ttaaatggca tcgatcctgt gggagcaatg taagaattgg agacatggtc      5760
     gtagtcaagg atgatcaatt accgccgatg aaatggctcc tggggcgcat aaccaaaata      5820
     tacaatggac ctgacggaat ctgcagagtt gttgacattg ctacgtcaaa gggcatcatc      5880
     aaaagagcgt tgacaaaggt ctgcgttctg cccaccggag attcccgtga gctccttgga      5940
     acctcagctt ccaagggggg ggagta                                           5966
//
ID   BEL-5_TrNi-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-5_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-223
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1040-1040 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 223 BP; 77 A; 48 C; 55 G; 43 T; 0 other;
     tgttgacaac gcacaagacc acagcggggg tgcggggtcc gggagcgcgg aggcagtgac        60
     gacagcgccg aaccagacgg ccagtacgag ttcactcacc gacgcggtga catttcacgc       120
     gtcaaataaa taaaaaatgt aatacaaggc aaaaatgtaa tacaaggcaa taataaagac       180
     atttttgcag tttactcgtt ttaacttaat aacgtagtaa aca                         223
//
ID   BEL-600_AA-I repbase;    DNA;    INV; 5938 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-600_AA_;
KW   BEL-600_AA-LTR; Pao_Bel_Ele215; BEL-600_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5938
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4981-5538] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1227..2498
FT                 /product="BEL-600_AA-I_2p"
FT                 /translation="MLYGRPEQLIHALLGKVRKTEPPRADRLESFIPFGMA
FT                 VQELCDHLEAAELHDHLVNPVLIQELVDKLPAATKREWVHYKRNALHVTLR
FT                 TFAEFSSSIVSEASEVTLTLDLRQTTKPDRSKVKDKGFIHAHTGEPSIASP
FT                 PMSPCRICKTAAHRIRNCEEFRRLNVSERVKLMERWKLCERCLNEHTGWCR
FT                 FKITCNVGSCRQPHHPLVHRGSATTSQPCQGQLHMHLDGKLPVIFRIVPVT
FT                 LCSGDKTYSTFAYLDEGSDMTLVEESIVRELGVRGILQPLTLQWTGNVKRR
FT                 ESSSECLSLEVVGEAGNRLELKEVHTVNRLYLPKQRVDFQQISNQYSHLHG
FT                 LNVPNHTGEEPKILIGLNNAYLLAPLESRVGRANEPIAVRSHLGWSIYGPR
FT                 ETVIAAGFLGMHKGYTNQQLHEIMRGYFLN"
FT   CDS           2914..5937
FT                 /product="BEL-600_AA-I_1p"
FT                 /translation="MLLVGPDLLAPLDAVVQKFRERPIAFGADIREMYHQF
FT                 LITPEDKHVLRFLFRTSQQDKPDIYLMDVAIFGSACSPASAQYIKNLNASH
FT                 YSEHYPDASNAIIRKHYVDDYMDCANTTEEAIERAKQVRYIHSQAGLEIRN
FT                 WVSNSTQFLEAMGEPIKPERVSLSVGKEGACERVLGIIWRPYDDVITFSTQ
FT                 MRDDLMTYMTSDIRPTKRIILSCIMSLFDPLGLLAPFTVHGKGLLQDIWRS
FT                 GCDWDELVNEDCYVKWTRLKAVFPFINRIEIPRCYLRGAPPSAYDTLEAHV
FT                 FMDASQDYYSCAVYFRITHEGAPKCALVSAKTKVGPLKPLSIPRMELLAAT
FT                 LGVRLLDTVLANHDVKVTKRFLWTDSSTVLHWIAADPRKYKPFVAYRITEI
FT                 LQGSRLDEWRYVRSKLNIADILTKWKTENFFDGEGPWFCGPNFLQHPEESW
FT                 PTHNRPPANRVLEMRACHMYHTTMAFVPLINATRVSKWNVLVRTMCCVIRF
FT                 VANCRKRMQRMPIETLVIPKLASLVRRSICSIDVPLKQEEYEVAEQVLWKQ
FT                 AQLECYEDEVATLLRNQKLPREEWQRIPKSSKLYKKNPFLDEYGVLRMEGR
FT                 IGAAEFVPFDTKFPILLPREHIITYRIIEFYHQRYGHANKETVYNEIRQRF
FT                 SIPNLRAGLVLVMKNCQWCKVRKAQPLTPRMAPLPLERLTPFAKPFSYVGI
FT                 DYFGPIDVSVGRRMEKRWIVLFTCLNMRAIHLEVAYRLNAESCIMAIRRFV
FT                 VRRGPPIAIFTDNGTNFKAASKELQNQIQRIDAECANVFTNARTRWSFNPP
FT                 SAPHMGGIWERMVRSVKEMMSALNERHRLNDEILLTVIAEAEEIVNSRPLV
FT                 YQSQDEEAGEVITPNHFIRGSSSGLKDPSIAPTNAAEALRNAYHRSQIISD
FT                 ELWKRWLIEYLPSLNARSKWLEESKPLVPGDLVFIVDDHGRNGWIRAKVEE
FT                 VIHGKDGRVRRAKVRTSNGVFLRPVCKLALIEVRASSKSCQEAISRQGLRV
FT                 GE"
XX
SQ   Sequence 5938 BP; 1725 A; 1287 C; 1483 G; 1438 T; 5 other;
     atttctcaaa aattttaagt taacctcact ttgagatgga gagttcctgc ggaaagtgcg        60
     ataatcccga caatgatgaa atggttgctt gcgattcctg cgcggtgtgg taccacctag       120
     attgtgttgg agaatcaccg ggagtggcga ataggcagtt tgtgtgcccc aagtgcaccg       180
     gcaagaaaga gaagagagcc aggaagggaa aggctgaagc caacgtgccc agggttgata       240
     agtctctagt gccgaaacgt ccaacgtcaa ccgagtccgg tggtagtacc gatcaggtgc       300
     ctacaaattt gatggtagcg tgtgatttgg agccaatcga atgtgaaagc cagataggaa       360
     aaacttcggg gattgcgact gcgaacgttg aaggcgagat agaaacgact ggtgcgatag       420
     gtggacattc gacggaatct tcaatgcaga gagaattacg tcgattagaa gaagaaacgc       480
     agcaaagaga gaagcaaatg gaggaagaaa ggattattcg agagaagaag ttagaatggg       540
     aagcgaaact ccagcggaag cagctagaac aagatcgtgc cctgcggcaa aagaagctgg       600
     atcagcaaag agaaatgtat cgcattcagt tgcaggaaga agcagatttt cgacgccagc       660
     aagaaaaact tttggaagat tttcgagagc agaagagagc agttcagcaa agcactatac       720
     cgtctgacga taccgtgggc aawccaacga tagaaggtgc ccccatagaa cgcgaaacgg       780
     ctagtagtgt ttttcacccc gtaccggaac tgccagacac acctaaacgt attgtcaagt       840
     caacgatacc cgttgttaag gagcgaaacg aaacctatga acaacattgt tcaactcagg       900
     taatacgcga ggagcatagt ttcgaatctg atgatgctgg gactgatgac gaaatagaat       960
     cwacagtatc acgtaggtct ggaccgacta aatctcagat agcagctcgt caggttctat      1020
     cgaagaaact cccgattttc agcggcaaag ttgaggaatg gcccctgttt tacagtagtt      1080
     acgtgaattc cacagaagca tgcggcttca ccgaagttga aaatttagta cgactccaag      1140
     agtgccttaa aggtccagca ttggaatcag tgcggagtag attgctgcta ccaaaagctg      1200
     tcccgcaggt gattgctacg ttacgtatgc tttatggacg tccagagcag ctcatccacg      1260
     cgttactggg taaagtgagg aaaacggagc cacccagggc agatcgtctc gaatcgttca      1320
     ttccctttgg aatggctgta caggagcttt gtgatcatct ggaagcagca gaattgcatg      1380
     atcatttagt gaaccccgta ttaattcagg aactggtcga taaattacca gctgcaacca      1440
     aacgagaatg ggtacactac aagcgaaatg cgctgcatgt cacgttgcga acgtttgctg      1500
     aattttcatc atcaattgtg tccgaagcaa gcgaggtgac gttaacgctg gatcttcgac      1560
     aaacgacaaa accagacagg tctaaggtaa aagacaaggg gttcattcat gcacataccg      1620
     gtgaaccttc catagcttca ccgccgatga gtccgtgtcg aatctgcaaa actgctgctc      1680
     atcgtatacg taactgcgaa gaatttcggc ggttgaatgt aagcgaaagg gtgaaactga      1740
     tggagcgctg gaaactgtgc gaacgatgct taaatgagca cacagggtgg tgccgtttca      1800
     aaataacatg caatgttgga agctgtcgac aaccccatca tccattggta catcgtggtt      1860
     ctgcgactac ctcccaaccc tgccagggac aactccatat gcatctggac ggaaaactac      1920
     cagtaatatt cagaattgtc cccgtcacgt tatgcagcgg agataaaacc tattccacct      1980
     ttgcctacct tgatgaaggt tcggacatga ccctcgttga agaaagtata gttcgtgaac      2040
     taggagtacg tggaatcctt cagcccctaa cgttacaatg gacaggtaat gtcaaacgtc      2100
     gagaatcctc ttcggaatgc ctatctctcg aggtagttgg cgaagctgga aatcgtttag      2160
     aactgaagga agttcataca gtgaatagat tgtatttgcc taaacagcga gttgattttc      2220
     aacaaatttc caaccaatat tcgcaccttc atggattaaa cgtgccgaat catactggag      2280
     aagaaccgaa aatcttgatc ggattgaata acgcctacct tttagcgcca ttggaatcga      2340
     gagttggccg tgccaatgaa ccaattgccg tccgatcaca tttaggctgg tccatatatg      2400
     gaccaagaga aacagtgata gctgcgggat ttctcggaat gcataaaggt tatacgaatc      2460
     aacagttgca cgagattatg cggggctatt tcttgaatgm agaaccgaaa tctacagtca      2520
     catcgcttcc ggagactgcc gaagatcgca gagcacggga gatgctggag tcaactacaa      2580
     caaaggttgg gaatcggtat caaaccggat tactgtggaa ggcggaagag gtgaatttgc      2640
     sggacagtta tagcatggca taccggcgtc ttcaaggatt ggaacggcgt cttctaaaaa      2700
     aatccggagc taagagaaca ggtaaatcag aaaatacaag aatatcagtc aaaacattat      2760
     gcgcataagg cgactccaca agaattagca ttggcaackc cgggaagagt gtggtacttg      2820
     ccactaagcg ttgtgacgaa ccccaaaaaa ccgggtaaaa ttcgactggt gtttgatgca      2880
     gcggctcaag taaatggagt ttctttaaat tcgatgctgt tggtcggccc cgatcttctc      2940
     gcgcccctcg atgctgtggt acaaaagttt cgcgaacggc caatcgcctt tggcgccgat      3000
     attagagaaa tgtaccacca attcctgatt acacctgaag acaagcacgt gctgcgcttt      3060
     cttttccgaa cgagccaaca ggataaacca gatatatatc taatggatgt ggccattttt      3120
     ggttctgcat gctcgccagc atcagcacaa tatattaaaa acttaaatgc atcccattac      3180
     tctgaacatt acccggatgc ttccaacgcc attattcgta aacattatgt tgatgattat      3240
     atggattgtg ctaatactac agaggaagca atcgagcgtg cgaaacaggt ccgatacatc      3300
     cacagtcaag ctggcctaga aattcggaac tgggtttcaa actcaacgca atttctcgaa      3360
     gctatgggtg aaccaatcaa acccgaaaga gtttcactaa gtgtcggaaa agaaggggca      3420
     tgtgaacgtg tactgggtat catttggcgc ccgtacgatg atgtgatcac attttctaca      3480
     caaatgcgtg atgatctgat gacgtatatg acctccgata tccgacccac caagcgaatt      3540
     attcttagtt gtataatgag cctgttcgac cctctagggc tcttggcacc cttcactgtt      3600
     catggtaagg gtttacttca agatatatgg cgctcaggtt gcgattggga tgagttggtt      3660
     aacgaggatt gctatgtaaa atggactcga ttgaaagccg tttttccatt tatcaatcga      3720
     attgaaattc caagatgtta tctacgagga gctcctcctt ctgcgtacga cacattggaa      3780
     gctcacgtat tcatggatgc cagtcaagac tactacagct gtgcagtgta ctttcgcatt      3840
     actcacgaag gagctccaaa gtgcgcgttg gtgtcggcaa aaacgaaagt tggacctttg      3900
     aagccgctat ccatcccgcg gatggaactt ctcgctgcga cacttggcgt gcgtttgcta      3960
     gacacagtat tagctaatca cgatgtaaag gtgacgaagc gattcctttg gacagattcg      4020
     tctacagttc tacactggat agctgcagat ccgaggaaat ataaaccgtt cgtggcctac      4080
     cggattactg aaattttaca agggtctaga cttgatgaat ggcgttacgt gcgcagtaag      4140
     ctaaacatcg cagacatctt aaccaagtgg aaaaccgaaa atttcttcga cggagaaggg      4200
     ccatggttct gcggtccaaa ttttcttcag catccggaag aaagttggcc aacacacaat      4260
     cgtcctccgg caaatcgtgt tctagaaatg cgagcttgtc atatgtacca cacaacaatg      4320
     gcgtttgttc cactaatcaa tgctactcgt gtttccaagt ggaatgtgct ggtacgcaca      4380
     atgtgttgcg taattcgatt cgtcgccaac tgccgaaaaa ggatgcaacg gatgccgata      4440
     gaaacgttgg tgattccgaa gctcgccagt ctggttcgac gatcgatctg ttccatcgac      4500
     gtgccactga agcaggaaga atacgaagtg gccgagcaag ttttgtggaa gcaggctcag      4560
     ttggagtgct atgaagacga agtggccaca ttactgagaa atcaaaagct accacgcgaa      4620
     gaatggcaac gaattccgaa gtccagcaag ctgtataaaa agaatccgtt tttagatgag      4680
     tacggtgtac tccgcatgga aggcagaatc ggagcagccg aatttgttcc atttgacacc      4740
     aagttcccca tcctactacc gagggagcat atcatcacct atcgcataat cgagttctat      4800
     catcagcgtt acggccacgc taacaaggaa acggtataca acgaaatacg tcagcggttt      4860
     tccattccaa atcttagggc tggcttagta ctcgttatga agaactgtca gtggtgcaaa      4920
     gtgcgtaagg cgcagcctct tactcctcgc atggcaccac ttcccttgga gcgtctcact      4980
     ccctttgcca agcctttcag ttatgtcgga atcgattatt ttggtcctat tgatgtgagt      5040
     gttggtcgac gaatggaaaa gaggtggata gtcctattta cgtgtttgaa catgcgggct      5100
     atccatcttg aggttgcata tcgtttaaac gctgaatcct gtattatggc gatacgtcga      5160
     ttcgttgttc gaaggggacc accaattgca atttttaccg acaacggtac taattttaag      5220
     gctgcgagca aggagctaca aaaccagatc cagcgaattg atgctgaatg tgccaatgtg      5280
     ttcactaatg caagaacacg ttggagcttc aatcccccat ctgccccgca catgggggga      5340
     atatgggagc gtatggtacg ctctgttaaa gagatgatgt ccgcactcaa cgaaaggcat      5400
     cgattgaatg atgagatact cctgacggtc atcgcagaag cggaagagat agtcaattca      5460
     agacctttgg tttatcagtc tcaagatgaa gaagcagggg aagttataac gccaaatcat      5520
     ttcattcgtg gctcatcttc tggcttaaag gacccatcga tcgcaccaac caatgcagcg      5580
     gaagccttgc gtaatgcgta tcatcgatcg cagatcataa gcgatgagtt atggaagcgt      5640
     tggttaatcg agtatttacc atcccttaat gcccgatcaa aatggttaga ggaatcgaag      5700
     ccattggttc ctggagatct tgtatttatt gtggacgacc atggacgcaa tggatggatc      5760
     cgcgcgaagg ttgaagaagt gattcatggt aaggatggtc gcgttcgacg ggcaaaggtg      5820
     cgcacctcga atggagtatt cctgagaccg gtgtgcaagc tggcgttaat agaagtgagg      5880
     gcatctagta aatcttgcca ggaagcaatt tcacggcaag gtttacgggt cggggaat        5938
//
ID   BEL-600_AA-LTR repbase;    DNA;    INV; 443 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-600_AA_;
KW   Pao_Bel_Ele215; BEL-600_AA-I; BEL-600_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-443
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 443 BP; 163 A; 65 C; 74 G; 141 T; 0 other;
     tgttagcacc actgtgcaaa cacatcaaca cccctgtgga aaacattcgc gactagatga        60
     catatgtcaa gttaatgtca gaaatagaag atacctgaaa gtaaaaagtc aattgaattg       120
     ttaaagttaa atctatatag tttttccaac tgctttttct agttttgtaa aacaattaac       180
     tttgaggaga atcggtaaga atgcttatta aaagtcaatg aaatttgatt gtatttgatt       240
     atattatgta gcaaaatacc agtggcaaaa cctacgggac gatgataagc acgtttaaga       300
     agcgggcaag aaattactaa aattgtaagt ctattatcga aataactatt aaatgatgaa       360
     ttcaaatata tgcttttttt tagtttgagc tgtacttaac gagctgctac agaaattacg       420
     ttttttcatc aaatctccga aca                                               443
//
ID   BEL-601_AA-I repbase;    DNA;    INV; 6251 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-601_AA_;
KW   BEL-601_AA-LTR; Pao_Bel_Ele80; BEL-601_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6251
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5262-5765] - Integrase core
CC   'GTAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           704..1852
FT                 /product="BEL-601_AA-I_1p"
FT                 /translation="MFETPLTSRGGAQTEAQSNRDGENQTIEPISEQKKKQ
FT                 KKKFQLRRMNEELKVIKIQSNALERKLQRVHAALVVDAEVPNNNLANKHYL
FT                 QLQLKTIEDAFAEYNTNQKRIYGLDVDEDTHNEAEERYIDFEQRYGELYVI
FT                 ITKLLDDIAQRERPTVAPSASTAATSAVPAVTMHLPPLKVPLPTFDGTYEN
FT                 WYAFKSMFETIMDRYQSESPAIKLYHLRNSLVGKAAGIIDQEIINNNDYAA
FT                 AWATLTERFEDKRLIIDKHIDALFDLPKMCGENAADLRKLIDVCTRNVDAL
FT                 KNLELPVDGLGESMLINRITKKLDGETHKAWELDQAANEMPDYETTMDFLR
FT                 ERCRVLEKIRPPDKRVVKPVKPGRQMVETRSKGTLVAHMI"
FT   CDS           2562..4682
FT                 /product="BEL-601_AA-I_2p"
FT                 /translation="MLVVPKITGDLPVTKVDSRAITIPEDIHLADPSFGVP
FT                 DKVDMLLGAEIFFEMLKSGRVQLPNCSAILQETQFGWVLSGSVPEKEPSVL
FT                 HSLCARAEEDIGHLVKRFWEIEAYCDPIAQTQTAEEECLDHFRQTHERTAE
FT                 GRYIVRLPFNDLKQQLGESRTMAEKRFLALERRLDKAPVLKDQYMSFLREY
FT                 ELLGHMELNNNAADKAPQSAYYLPHHYVLKPSSRTTKLRVVFDGSAESTTG
FT                 VSINNTQMIGPTVQNDLISIVSNFRAYKYGITADIPKMYRQVEVHADDRRY
FT                 QRIVHRSNCDQPLQTYDLRTVTYGLASSPFLATMALKQLAIDEGTQYPLAA
FT                 VAVEKSFYIDDVLTGANTLEDALELKTQIIGLLRKGCFDVHKICSNSEAVL
FT                 QDVPQDMRESVVNIEDPSINTVIKTLGVAWRPQEDCFTFVVLVDDAVGSDR
FT                 LTKRMILSQIARIFDPLGFVGPVVTAAKLIMRELWSLNLDWDQPVPSEMAN
FT                 FWMDFRSQLRWLNELKIPRWILADGARSVELHGFADASDLAYGACLYTRIV
FT                 KDDGSAALKLICSKSRILPRKKGKQKEITTPRAELLAALLLSRLAVKQLEA
FT                 LDVKFESVILWSDSQIVLCWLKKSPESLAVYVGNRVHEIRELTNRFTWNYI
FT                 PSKSNPADSISRGVEPKNLQSDELWWHGPPTLRHTDSGFDEPNPLKKISCR
FT                 SYAKLFW"
XX
SQ   Sequence 6251 BP; 1722 A; 1446 C; 1597 G; 1482 T; 4 other;
     ttctggtcct tacaacccgg atttaactag ttttcggaat gatgtgaccg acttttgtgc        60
     gcaaaaagtc ggaattcgcg aagtgaaagt gattttccgg aagatttctt tgggctttgt       120
     gttgaatcaa ccgaatgtcg tcggcaaaca gcgacgccat ttgtgattcg gtttgatttc       180
     gtgaaaaagt taacgcagca atattttgct ggtaccgcat attggggaag tttcgtcggc       240
     atgcttgccg ccaagttgtg acgccagttg gcgaatcgta gtgtgaaaaa ttgcccgtag       300
     aggcagaata gaagcttgtg ctttcgctcc gaagaaattt cgcgacgcca tcttggcgaa       360
     tcgtgtcgtg tgtgctcttc cggtactcag ctaccaccga cttcagacgc cgtcacggcg       420
     atccatgtgt gtgtgcatac ggcgcagcgt cggcttttgt cgacccagaa aaattgtgac       480
     gtcattttga cgagtcgtgt ttactgaaaa caagattgat tgtgcttgtg cttgcaataa       540
     cgaaaaataa aaagcatttg agaaacgaat cgattgtgtt tttgagcgga aatcgtttca       600
     aggccatagt gtagagcagt gtgtgtgcgc gaatgcgttc taagctaaga tggcctatca       660
     gtgtttccca accggtttcg attcgagtgt gaagtgaagc aaaatgttcg aaactccgtt       720
     gacatcgaga ggtggggcgc aaacagaagc acaatcaaac cgagacggtg agaaccaaac       780
     gatcgaaccg atcagtgaac aaaagaaaaa acagaagaag aaatttcaat tgcgaagaat       840
     gaatgaagaa ctaaaagtga ttaaaatcca gtcgaatgca ctggagcgaa aattgcagcg       900
     ggtgcatgct gcacttgtag tggatgctga ggtgccaaat aacaatttgg caaacaaaca       960
     ctacctgcag ctgcagctga agaccataga agatgcgttt gctgaataca atacgaacca      1020
     gaagcgcatc tatggtctcg acgtcgacga agatacccac aacgaagcgg aggagaggta      1080
     cattgatttc gagcagcgat acggtgagtt gtacgttatt attactaaac tgcttgatga      1140
     tattgctcaa cgagagaggc cgacagtggc gccctcggca tcgacagcgg ccacgtcggc      1200
     ggtcccagct gtgacgatgc acctgcctcc actgaaagtg ccgctgccta cgtttgacgg      1260
     tacttatgag aattggtacg ctttcaaatc aatgttcgaa accatcatgg accgctacca      1320
     atcggagtca ccggcgataa agttgtatca tctccgcaac tcgttggtgg gtaaagcagc      1380
     cggcatcatc gatcaggaga taattaacaa caacgattat gctgcggcgt gggcgacgtt      1440
     gaccgaaaga tttgaggata agcggcttat tatcgacaag catatcgatg ctctcttcga      1500
     tcttcccaag atgtgtggtg aaaacgctgc ggacctgcgt aagctgatag atgtttgtac      1560
     gaggaatgtt gacgcgctca agaacctaga acttcctgtt gatggactag gtgaaagtat      1620
     gctgataaat cggatcacga agaagctaga tggcgagacc cataaggcgt gggagttgga      1680
     tcaggctgcc aacgaaatgc cagattatga aactacgatg gacttcttga gagaacgatg      1740
     ccgagtgctg gagaaaattc gccctccgga caagcgtgtc gtgaaaccgg tgaaaccagg      1800
     aaggcagatg gttgaaacga gatccaaggg taccctagta gcacacatga tataatagat      1860
     gcagaataac tattatatga cagcagctat tatgggcagc agcttggtaa ccacatctga      1920
     caagtgtcca cagtgctcta gcaaccacga attatggaaa tgcgacgttt tcaagaaggc      1980
     gaatctcgcg gatcgctaca gtaccctgcg tcgaatcgga gcgtgtttca actgcctcca      2040
     aaaggggcat cgtacggttg attgctcatc tgagcattct tgcaagaaat gtagcaaacg      2100
     gcaccacaca acgctgcatc cgaacgacac ccccatgaaa aagaacgatt ctccgccatt      2160
     agttgttgga ccatcagacg gcgataaacg aaacgagcag caagcatcga gtcaaaaccg      2220
     cgattcatca gttggcgctg gtgckccgaa gcctgamggt ggccaggagc aacaacgttc      2280
     taatcttctg cacacggcca caatctggca aacagatatt gctttcgaca gcggtgatcc      2340
     tcgtatatgg aagagcgaac aacccttacc cttgtagggt tcttctcgac tcaggctcac      2400
     atacaaactt tgtgtctgag cacttcgctg ctctgttggg attaaagaag cagcctgcga      2460
     actattcgat tagtgggctg aatgaaacac gaacgaagat tcggttcaag atccacgcta      2520
     aattgaaatc ccgattaaca gattacaccg cttgtcttga gatgctagtg gtgccgaaga      2580
     taaccggaga tttaccagtt acgaaagtgg attcgagagc gatcaccatc cctgaagata      2640
     tccacctagc tgacccgagc tttggtgttc cggataaggt tgatatgctg ttgggcgccg      2700
     aaatattctt tgagatgctg aagtccggac gtgttcaact accgaattgt tcagcgatac      2760
     tccaggaaac gcagttcggt tgggtcttga gtggttctgt ccccgaaaag gagccttcag      2820
     tactccattc actctgcgcg cgagcggaag aagacattgg acatctcgta aagcggtttt      2880
     gggaaatcga agcctactgc gaccctattg cgcaaactca aacagctgaa gaggaatgct      2940
     tggatcattt tcgacagact catgagcgta ctgcggaagg acggtacatt gtccgtctcc      3000
     cgttcaacga cctgaaacaa caactgggcg aatcacgcac gatggctgag aaacgcttcc      3060
     tcgccttgga gaggagattg gacaaagcgc ctgtattgaa agatcagtac atgtcgtttc      3120
     ttcgcgaata cgaactactt gggcacatgg agttgaacaa taatgcggcc gataaggctc      3180
     cacagtcggc atattatctt cctcatcact acgtgttgaa acctagcagc agaacaacaa      3240
     aactccgagt agtattcgac gggtcggctg agtctactac tggcgtgtcg atcaacaata      3300
     cgcaaatgat tggaccaacc gttcaaaatg atttgattag catcgtatcg aacttcagag      3360
     cctacaagta tgggataaca gccgatatac cgaaaatgta ccgccaagtc gaggtacacg      3420
     ctgatgacag gcgataccag aggattgtgc atcggtctaa ctgcgatcag ccgctccaga      3480
     catacgattt gcggacggtt acgtatggac ttgcatcgtc tccatttctg gccacgatgg      3540
     cgctaaagca attagccatt gatgagggga cacaatatcc gttagctgct gtggcagttg      3600
     agaagtcatt ctacattgac gacgtgctga ctggggcgaa tacgctagag gacgccttag      3660
     agctgaaaac ccagatcatc ggattactgc gcaaaggatg tttcgacgtg cataaaattt      3720
     gctctaattc ggaagcagtg cttcaggatg tcccacagga tatgcgagaa agtgttgtga      3780
     acattgaaga tccaagcatc aatactgtaa tcaagaccct gggcgtggcc tggcgtccac      3840
     aggaagattg tttcaccttt gtcgtgctgg ttgatgacgc cgttggatcg gatcgtctca      3900
     cgaagaggat gattctcagc cagatcgcaa ggatttttga cccattgggt tttgttggcc      3960
     ctgtggttac agctgcgaaa cttattatgc gggagttatg gtctctcaat ctggattggg      4020
     atcaacccgt accgagcgag atggctaact tctggatgga ttttcggagt caactgcgct      4080
     ggctcaacga gctgaagata ccgagatgga ttcttgctga cggagctcgc tccgtagaat      4140
     tacacgggtt tgccgacgct tcagacctgg cgtatggggc gtgcttgtac accagaatcg      4200
     tgaaagacga tggatctgct gcgctgaagc ttatttgcag caagtctagg attctaccac      4260
     gaaagaaggg aaagcaaaag gaaataacga caccccgcgc ggagctgttg gctgctctgc      4320
     tgttatcaag attggccgtc aagcagctgg aggcgctcga tgtgaaattt gaatccgtta      4380
     ttctctggag tgattcacag atcgtattgt gctggctaaa aaaatcgccc gaatctcttg      4440
     ctgtatacgt cggaaataga gtccatgaaa ttcgagagct gaccaaccga ttcacttgga      4500
     attatatccc ttccaagtcc aacccagctg attccatatc cagaggagtg gagccgaaaa      4560
     atctgcaatc tgatgaactg tggtggcatg ggccacccac tctacgacac accgacagtg      4620
     gttttgatga acccaaccca ttgaagaaga tcagctgccg gagctacgca aaactgtttt      4680
     ggtgacaacg ccggaacatc ctcgattgca gcttttcgat cgaatcagcc gatatccgat      4740
     catgcagcgt acaatggcgt atgttgttcg tttttgtgac tatgtgaaga gcggcaggac      4800
     aaccattacg aaaggtttac cgacaacatc cgaaatatca cgagcatctg cattgatcat      4860
     ccgattggtg cagaaagaat ccttcaaact tgaaatcagc gcgttgcaag ccggtaagga      4920
     gttcaacttt tcgactcgca acttaaatcc tttcgtcgac gaggcggatg ggattctccg      4980
     tgtaggtgga agattgaaaa actcgtcgct tccatatcat cagaagcatc caccagcctt      5040
     gcttcctaag aagcatcctg tgacggttgc attgatacgg tacctgcatc gttcgaacat      5100
     gcacatcgga cagcgcagcc tcctcggcat tgttcgacaa aggtattggc cactagacgc      5160
     gaggagcact attcgtaaat tagttcacca gtgcattcct tgtttccgga tgaagccaac      5220
     gagagccact caactgatgg gaaacttacc ggtackatcg wgttcaaccg tcacctgtat      5280
     ttgctaatac gggactcgat tttgccggtc ctttcaaaat acgaccaaat gcgaaaatga      5340
     agaatgcacc aacgttgaaa ggctatgtat gtgtctttgt atgtatggcc acccgggcac      5400
     tacatttaga ggccgtctcc gacttgacaa ccgaggggtt catgggcgca cttcaacgct      5460
     ttgtgagtcg ccgtggagtc gtctcgaagc tgtattcgga caacgcgaca aattttgaag      5520
     gcgcaaacaa cgaaatggag cgtctagcta ccctattccg agaagaacaa caccagctga      5580
     agctgaacga gttctgcacc caacgagcca tcgactggtc tttcatacca ccacgcagtc      5640
     cgcactttgg cggaatatgg gaggccggcg ttaagtcggt gaaatcacac ctaaagatga      5700
     ttatggcgga acacaagcta tcgttcgaac aattttcgac agtgttagtg caaatgaggc      5760
     tatattgaac tcgaggcctc tgacacaact ttcagatgac ccgaatgatg tcagtgcaat      5820
     tacacccgct cacttcctga tcgggcggga atttcaagca atcctggagc catcgtacca      5880
     gcacatccct caaggaagat tatcgacgtg gcaactggtc caggacttga agcaacggtt      5940
     ttggaaggct tggacgcatg attacttgca cgagttacag aagctacaga gagatttcaa      6000
     ggtgaccaag ttccaagtgg gcgccttagt tctcatcgtc gacgagaaca gcccaccact      6060
     tcactggcag ttggctcgaa tcgtggaact acatcaaggc agcgacggcc acactcgcgt      6120
     ggttactttg cgtacaaagg acggaactac gaaaagggcc gtaaagaaga tttgcctact      6180
     gcccctggac aatgagcgcg accgttcagc cgagtagttt tgaaattctg caatttcaac      6240
     ggccggcagg a                                                           6251
//
ID   BEL-601_AA-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-601_AA_;
KW   Pao_Bel_Ele80; BEL-601_AA-I; BEL-601_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-222
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 222 BP; 66 A; 51 C; 38 G; 67 T; 0 other;
     tgtttattgt agcgacacac cttgccttgc tagcaattga aattgaaact ttgctggcaa        60
     ccctggagaa aaatctagta ccacactaac acaccctttg taatacaaca ggaaataaag       120
     ccagaatttt ttgtatcgtt cacaagacca gacgcgtttt cttcacggtc gtttggaaga       180
     aaattttctc gtttacagtc cacttattcc cgagcttgta ca                          222
//
ID   BEL-602_AA-I repbase;    DNA;    INV; 6248 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 15.10, Created)
DT   14-JAN-2011 (Rel. 15.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-602_AA_;
KW   BEL-602_AA-LTR; Pao_Bel_Ele218; BEL-602_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6248
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [2] (Consensus)
XX
CC   Positions [5744-6301] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..2782
FT                 /product="BEL-602_AA-I_1p"
FT                 /translation="MCADVTAGIENLPWTCKECLNTGTADKSQHREATVVD
FT                 VSDASGKEPADSLDPRVDKRSSNNEQDQDSDQEEAEMQHQIELRQMRAKFE
FT                 RQLQREKEKMVLKIRLEREMLQRKKEAEAEFHKMRNEMYKEFEGVMDPFVQ
FT                 EEGAVGGTYVSNHVQLETDLEKAWKEKFKFPEQQGKSADDIRGTFPKSSTP
FT                 ENAPLQRDTINNRQSAIENVLEESTPLKNPQVPTVKIDKPVLSHPPHPELS
FT                 ANIPRNSALYQAPISTANIEVPATFNPSANQQGIRNQHQGEPELTKAQIAA
FT                 RKGPFAKLPVFTGRPEEWPLFISSFNNGNAACNWTDLENLGRLQESIRGPA
FT                 LEAVRSRLLLPESVPRVIDTLRLLYGRPEQLLHSLMLKARKADPPRIDRLG
FT                 TFIHYGMVVQQLCDHLVASGLIDHLVNPMLITELVEKLPPSTKMEWVRYKR
FT                 QQHVVDLRTFSDFLSIIVSEATEATLYTDFHVDSRPNRDKKEKKSKARDHE
FT                 GFLNAHIGVQSPSQRSTNQHNIEPQQAIRKPCRGCNSLEHRTRSCEDFQRL
FT                 TYSDRLKITEKWKMCQLCLNEHGQIRCRFKGHCNVGDCKERHHPLLHPPNP
FT                 PMALSTNCHVHNSEHHPIIFRMVPIKLHHEGRTLDVVAFLDEGSSYSLMES
FT                 AIADQLKLKGAWEPILVKWTAGMSRLERDSRSVDVSISATGSKEKYLLRNV
FT                 HTVKELQLPEQRIRFAEVAARFKHLCGLPVADCLSGSPKVLIGLKHLHVYA
FT                 PLESRIGNPGEPIAVRTKLGWTIYGPQGGENMATGFAGHHTVGDITELDLQ
FT                 ELLRRHFTLEETGLDVKVLPESAEDRRAKELLEQTTMRVGKRFETGLLWRS
FT                 DDPQLPDSFPMALKRVKSLERRLEK"
FT   CDS           4478..5542
FT                 /product="BEL-602_AA-I_2p"
FT                 /translation="MEIPRCYFADVKASDYQDLELHVFADASEEAYGCVAY
FT                 FRVLVKGEPRVALVSAKSKVAPLQYMSIPRMELLAAVLGARLAAFVKSNHS
FT                 VQVQRVFYHIDSATVLSWIRSDHRKYKQFVAYRIGEILTITNPKQWSWVAT
FT                 KHNIADVLTKWGKNGPPLATESEWVRGPDILYRLDQEYSQRDLPPPGVVEE
FT                 LRAYHLFHEVSFHKALIDTTRFSRWTILVRSMACVFRFISNCHKRMKKQPI
FT                 ETLQASPKLVKLLKRTFPSIKSPLKREEYQMAENFLWKAAQQEGFPDEMKT
FT                 LLKNNRLPQSKLHLIERSSPLYRLAPFLDANGVIRMEGRAAHADFIPFEQR
FT                 FPIVLPKGHDVT"
XX
SQ   Sequence 6248 BP; 1812 A; 1438 C; 1557 G; 1435 T; 6 other;
     attctcaaaa atcaatgcga tgccatcatc taaggaaaag gaacataacc ccgaaagcac        60
     cgggtatgat tgcgcgcttt gcgaaagacc gaatcatgcg gatagcaata tggtcagctg       120
     tgagamgtgt cagagttggt tccactttat gtgcgcggat gtgactgctg gcatcgaaaa       180
     cctcccgtgg acgtgcaagg agtgtttaaa cacaggtact gcggacaaat ctcaacaccg       240
     tgaagccaca gtcgtcgatg tctcagacgc gtccggcaag gagccggccg attcccttga       300
     tccgagggtc gataaaagat cgtcaaacaa cgagcaagat caggattcag accaggaaga       360
     agccgaaatg cagcaccaaa tagagctgcg tcaaatgaga gccaagttcg agcgccagct       420
     tcagagggag aaagagaaga tggttctaaa aattcgccta gaaagggaaa tgcttcaaag       480
     gaagaaagag gcggaagcag aatttcacaa gatgcggaac gagatgtaca aggagttcga       540
     gggtgtgatg gacccattcg tccaggaaga gggcgctgta ggaggtacct atgtgtcgaa       600
     tcacgtacag ttggaaacgg atttagaaaa ggcgtggaag gagaagttca aatttccgga       660
     acagcagggc aaatcggccg atgatatccg tggaactttt ccgaaatctt ctacacccga       720
     aaacgctcca ctgcaacgag atactatcaa caaccgccaa tcagcaatcg aaaatgttct       780
     ggaggaatcg acgccactca agaatccaca agtaccaacc gttaagatag acaagcctgt       840
     cttatcgcat ccaccgcatc cagaattgtc tgcaaatatt cctcgaaact cggccttata       900
     tcaggccccc atctctacgg cgaatataga ggtgcccgcg acgttcaacc caagtgcgaa       960
     tcaacagggg attcgaaatc agcatcaagg agagcctgaa ctgaccaaag ctcagatagc      1020
     ggcaagaaaa ggtccgtttg caaagctacc cgtttttacc ggtcggccag aagagtggcc      1080
     gctcttcata agcagcttca ataatggcaa tgctgcatgc aactggaccg atcttgaaaa      1140
     tcttggtaga ttacaagaga gtatccgagg gccagctctg gaagccgtaa ggagcagact      1200
     gctgttgcca gaatcggtcc cacgagtcat tgatacgctt cggcttctct atggccgccc      1260
     ggagcaactg ctccattcac ttatgctgaa agcaaggaaa gcggatccac ctcgtattga      1320
     tcgtttgggt acattcatcc actatggtat ggtcgttcag caattgtgcg accacctagt      1380
     agcatcggga ctaatagacc atcttgtcaa ccccatgctc atcacggaac tagtggaaaa      1440
     gctaccgccc agtacgaaga tggagtgggt tagatataaa cgtcaacaac acgttgtgga      1500
     tttgagaact ttttcggatt tcctctcgat aatcgtttcg gaagctaccg aagcaacgct      1560
     ctacacggat ttccacgtgg atagtcggcc taaccgggac aagaaagaaa agaaatcgaa      1620
     agctagggat cacgaaggat ttctcaatgc tcacatcggt gtccaatctc catcacaacg      1680
     ctctacaaat caacataata ttgagcccca acaagcgata cgtaaaccgt gccgtggatg      1740
     taacagtctc gagcatcgaa cgcgttcctg tgaagatttc cagaggctga cgtatagcga      1800
     taggctaaag ataactgaaa agtggaaaat gtgtcaattg tgcctcaacg agcacgggca      1860
     aatacgttgc cgattcaaag gtcactgcaa tgtaggagat tgcaaagagc ggcaccatcc      1920
     cctccttcat ccaccaaacc ctcctatggc tttgtcgaca aactgtcatg tgcacaactc      1980
     ggaacatcat ccaatcattt ttaggatggt tccaattaag ttgcaccatg aagggcgtac      2040
     ccttgacgtt gtcgcctttt tggatgaagg gtcttcttat tcgctgatgg aaagcgccat      2100
     tgcagaccaa ctgaaactga aaggagcctg ggaacccatt cttgtcaaat ggaccgcggg      2160
     aatgagtaga ctggaacggg actcaaggag cgttgacgta tcaatttcgg ccaccgggtc      2220
     aaaggagaaa tatctgctac gaaatgtcca cacggttaaa gagcttcaac tccctgagca      2280
     aaggattcgt tttgctgagg tggcagctcg attcaagcat ctttgtggac taccagtagc      2340
     ggactgttta agtggatctc caaaggtgct tatcggcttg aaacatttgc atgtgtatgc      2400
     accgctggag tcacggattg gaaatcctgg tgagccaata gcagttcgta ccaaactagg      2460
     ctggaccatt tacggcccac aaggtggtga aaacatggca acagggtttg ctggccatca      2520
     tacagtcggt gacataactg aactagattt gcaagaacta cttcgaaggc actttacatt      2580
     ggaggaaacc ggtttggacg tcaaagtgct gcctgaatca gccgaagatc gcagagcaaa      2640
     ggagctactg gaacaaacca ctatgcgggt cggcaagcgc ttcgaaacgg ggcttctgtg      2700
     gcgaagcgat gacccacagc taccagatag cttccccatg gcgctaaaac gcgtgaagag      2760
     cctggagcgg agattggaga aaaawttgga gctgaaacag aatgtagaga ggcaaattga      2820
     agaataccaa cacaaaggct acgctcacat cgctacgaac actgaactga ttgaagctga      2880
     acctggaaag gtctggtatc tccctttaaa tgtggtactc aacccaagaa aagccgggca      2940
     aagtccggct tgtatgggac gcagccgcgt ccgttcaggg aaagtcgctc aactctgaat      3000
     tgctcaaagg gcccgacctt ctatccagtt tgccgtctgt gttgtgtccg ttccgagaac      3060
     gtcccatcgc tttcggtggc gatatagcgg aaatgtatca ccagctgcga atacggtcaa      3120
     gtgacaagtc agcacaaagg tttctatatc gtccgaacgc atcaggtcct cccataacct      3180
     acgtcatgga cgtcgccacc tttggcgcaa ccagttcacc atgctcagca cagwttatta      3240
     aagatcgaaa cgctcaggac tatgcggagg aatatccgga cgctgtggat gcaattacac      3300
     agcgtaacaa aaatgacatt tttgcgtgtc tcaagaatta aataatgtgt ctctagtaga      3360
     tttgaggttg ctgaatctga tgccgttcac agaaatgctc cagcacgtca caatttttag      3420
     ctacaggtcg ctaaagttgt aaaaaacaca ggtttcatca atgttcacaa aaatttaaac      3480
     aatgacttat cgaaaaatat tatgatctta tcgataaata ataaacatta cgtggacgat      3540
     tatttagatt ccacgttcac tgtgagcgag gctatcaaac gagcagagga ggttacatac      3600
     atccactcca atgccggttt tcacatccga aattgggtgt ccaacagtga agaattccaa      3660
     caacacttcg gtagaaaacc ggagaaccac atcgttcatt tcgctagcga caagtccagc      3720
     agcaatagta tggaaagaat tctgggtatg tcttgggata cagtaaagga tgtctttgtg      3780
     tgtactacgg ctctgcgcga cgatctgcaa gtatatttga ccgaaagtaa gctgcccacc      3840
     aaacgagtat tgttgagcgt tgtcatgagt tttttttgac ccgctcggcc tgtgggcgcc      3900
     tttcaccgtg cacggaaaaa tcatcgttca agatctttgg aggaatggtt gttcgtggga      3960
     cgagataatt gatgagcact ccgcgaagaa gtggtaccgt tggattgcac tactgccaag      4020
     tcttcaagcc atggaaattc cgcgatgtta cttcgccgac gtgaaggcat cagactacca      4080
     ggacctcgaa ttacacgtgt ttgcagatgc aagcgaagaa gcttatggat gtgtcgctta      4140
     ttttcgtgta ttggtgaaag gagaaccgag agtggcactg gtttcagcaa aatcgaaggt      4200
     agctccgttg caatacatgt ccataccgag aatggaactc cttgctgcgg tacttggagc      4260
     cagattagcc gcctttgtga agtcgaacca ctctgtacag gtgcaaagag tgttctacca      4320
     tatcgattca gctacagtac tttcatggat ccgctccgac cataggaaat acaaacagtt      4380
     tgtcgcatat cgcatcgggg aaattttgac catcaccaat ccaaagcaat ggagctgggt      4440
     ggctacgaag cacaatatag ccgatgtttt aacgaaatgg ggaaaaaatg gaccaccgtt      4500
     ggcgacggaa agcgaatggg tacgaggccc tgacattctt tatcgattag atcaagagta      4560
     ctctcaacga gatttgccac cccctggcgt agtagaagaa ctgcgagcat atcatctgtt      4620
     ccacgaagtt tcgtttcaca aggctctaat agacaccacg cgattctcgc gttggaccat      4680
     attggtaaga agcatggcct gtgtgtttcg tttcatttct aattgtcaca aaaggatgaa      4740
     gaaacagcca atagaaacac tgcaagcctc gcctaagttg gtgaagttgc taaaacgaac      4800
     gtttccatca atcaaatcac ctctcaagcg cgaagaatac cagatggcgg aaaactttct      4860
     atggaaagca gcacagcaag aaggattccc cgacgaaatg aaaacgctat tgaagaacaa      4920
     cagactacct caatcgaaat tgcaccttat tgaacgctcc agcccgctct atagattggc      4980
     tccatttcta gatgcgaatg gcgtgatccg gatggaaggc cgtgcagccc acgcggattt      5040
     catccctttc gagcagcgtt tcccaattgt actaccgaag ggccacgacg ttacakcgaa      5100
     actactacta cactatcatg caaaattcgg tcacgccaac cgtgagacgg tagtgaacga      5160
     gctgcgacag cgtttctatg ttcaaaatat tcgcgcggct gttttgcagg tgattaagga      5220
     ctgtamttgg tgcaaaatac ataaatgtat tcctgtggcg cctaggatgg ctcctttacc      5280
     ggtgcagcgt ctaacccccc aawtacggcc atttagttat gtaggagttg actacttcgg      5340
     cccagtagtc gtcactgtag gacgtcgctc agaaaaaaga tgggtgtgtc tattcacatg      5400
     ccttgtgact cgggcgatcc atatggaaat agcctatagc ttgagcagcc aatcatgcgc      5460
     catggcaatc agacgtttca tttgcagaag gggcactccg ttggagattt tttccgacaa      5520
     cggaactaat tttcaagctg cgagtaagga gttcatccag gaaattcgtt gcatagaaat      5580
     ggaatgtgcg gacatcttta ccgacgctag gactcgttgg aactttaacc ccccagcagc      5640
     accacacatg ggtggtgtat gggaacggtt agtgaggtcg gcaaaggagg cactaaaggc      5700
     tttacacaat ggcggcaaat taagtgacga gatattgttg acgatattat cagaagccga      5760
     ggacatggtg aattctcgtc cgttaacata cgtgccacaa gaatctgcag actgcgaagc      5820
     cctcacgccg aatcattttc ttcgtggttt gcctgccgga gagcgtgaag aggctaattt      5880
     gccaacaagt tctgccgaag cgttgcggga cagctataaa cgatctcaag agctggcaga      5940
     catgttatgg aaaagatggc tgaaggaata catcccaaca atcaaccatc gcaccaaatg      6000
     gcttgctgaa caagaaccta tcgcagaagg agagctggtc tatattactg atgggaacaa      6060
     ccgtaggacc tggatccggg gtatagtaga aaaggtgata cgagggactg atggaagaat      6120
     tcgacgtgcg ctagttagaa cgtctaaggg cgtttttcgt cgggcggtcg ccaagctagc      6180
     ggtgatggag ttgcggagta aatctggtca aatccctggc cctgaaccag agttacggga      6240
     gggggaat                                                               6248
//
ID   BEL-602_AA-LTR repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-602_AA_;
KW   Pao_Bel_Ele218; BEL-602_AA-I; BEL-602_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-509
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 509 BP; 172 A; 85 C; 97 G; 155 T; 0 other;
     tgttaacact accgcttggt accaccctag tggacgaacc caacagatcg acaagtactg        60
     ctgtctgacg tacaaatgtc atggatactt tggcgaacgc tgtcactgtc agcgtagttt       120
     agcgaagatt ataaatgcgg aaaaaagaag aattacgttt cgttagacaa aatcacattt       180
     gagtcaatcc aagttgaatt cgttcatcct aattatattt cggttaaatt gttgaatttg       240
     attaatattg tgtagcacac gtgagtaaac gtattctgaa cgttaaatgc gagggttaca       300
     gtgctagaaa attattctta taattacagg ccggaataca ttaagaattc gtatgaaatt       360
     gttcacccga attgaagtaa ttgaaaacca ttgatgtaag acaccatgta attaaaactt       420
     gaaattattc taataaaaca tatttgcagt tttgagctgt acgacaaact cgtctgctgc       480
     aaaaggattt ctaaatttcg gtgtgaaca                                         509
//
ID   BEL-603_AA-I repbase;    DNA;    INV; 6613 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   07-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-603_AA_;
KW   BEL-603_AA-LTR; Pao_Bel_Ele73; BEL-603_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6613
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [3]
RP   1-6613
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [3] (Consensus)
XX
CC   Positions [6018-6587] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..900
FT                 /product="BEL-603_AA-I_1p"
FT                 /translation="MSKAGSHGKANPRSNAGADTTLHQCMICSLPNEADRK
FT                 MVQCDVCDHWFHFMCAGVNDSIEDENRSYVCVACALPAPSISSTTSSVREA
FT                 RMRLEMQRLEEEKRLQERLREEREKQEKTLQEMTIRLERERGEKAIAAMLT
FT                 LEKEHIQQKYSLLHTQLNDDGDVGSARSRANRGTTSKVQDWMNQNTAVTLS
FT                 TNTGSNXTGLTLQPAVSVDSSLINSSVAMASGNTATPSHNQQDFQSIQPVE
FT                 SXQVRVISQSDCVSSLAPTNTISSPLSVPPQIKQPVRFPVDALVL"
FT   CDS           887..5227
FT                 /product="BEL-603_AA-I_2p"
FT                 /translation="MLWCYRNPIPTPSASVQEASTIPSTTCDDNNVFVISP
FT                 PTCTSASYGQLPPVPCSSSSQQQSVPQTTSVSQHYPQPSTARHGSAYPAVM
FT                 SSRSVQHVQHGSLPWNASLPPPVHQSTPTSMQSGRHPLIGTVGNQSNPYTS
FT                 QHQAAYGCHRQPLGANDAAYPVVSQYIPTATAVSSQPWFNDMRNMYQNQWV
FT                 SAPNQNLLTAGSQMFPNIMGNISSQGLQGHFPNQINQFTNAMPSNIMPASS
FT                 VGLNISNFPTQSGSAPCLSTGAELGPNAQQLAARHVVPKDLPPFGGNPAEW
FT                 PLFWSSYEXSTQMCGYSSSENLLRLQRCLKGDARKAVNSFLLHPSNVGEIM
FT                 STLRMLYGRPDAIIGSLLNDVRNTPAPKPEKLETLVNFGLVVRNLCAHLVS
FT                 AGQQMHLTNPILLQELVDKLPANIKLGWALHKQTVVEADLRSFSDYMSLMI
FT                 NAASSVTSGIGECSKSERQKGKAFVNSVRAEANAESSRENNNKKSSGGRNT
FT                 NNSQALTSPRIRPCAVCQTDGHKPKDCPSFKAKNLADRWKTVQEAHLCKRC
FT                 LYPHGKWPCKAPPCGAEGCQDNHHKFLHPGNPQNSSGFGNVASSPSNTGVV
FT                 TVHQHSHQNILFRIIPVSLHANGKTAKTFAFLDGGSDSTLLENSIAKQLGL
FT                 SGPTVPLCMQWTNGVQRTEEESERVELEISGNSSKRYKLSGVHTVSSLDLP
FT                 RQTVDGNMLQAKFPHLKGLPITSYDAAVPGILIGLDNTKLKTTLVIREGNG
FT                 DEPVAAKTRLGWTVFGKAGTSNVATSNRVLHVCHQSKDTDLHELVKSFFTI
FT                 EGAGTDSNTLVESKLEKRAREIMEATTVRLDSGKFQTGLLWRYDKIEFPDS
FT                 RPMAERRLQCLETRLSKNPTLYEKVRQQMVEYVTKGYAHKATKQELEQASP
FT                 GQTWYLPLGVVSNPKKPEKVRIVWDAAASVRGVSLNSVLLKGPDLLQSLPT
FT                 VLCRFRQREVAINADIREMFHQVYIQPEDRQAQRFLWRNNPTERMEVFVMD
FT                 VAIFGATCSPCSAQFAKNLNAKEHAAEYPSAATAIVENHYVDDYLDSVDTI
FT                 EQAIQLATEVKLVHQRGGFDLRHWLSNRKEVLEKLGEGYSDESKNFVMGKG
FT                 CSSERILGMIWLPQEDVFSFAIEYRKDLGRLLNGDVYPTKRELLSLVMSIF
FT                 DPLGLVANYVIHGKVLIQDVWRTNTGWDEKIPDEIFPSWQRWVVSLRELAQ
FT                 LRIDRCYFPGYTPAALETLELHVFVDASLAAYAAVAYFRIDDRGTIRCSLV
FT                 SSKTKVAPLKQLSVPRLELQAAVLGTRLMKSIIGGHTLPIRRKVFWSDSNT
FT                 VLAWLRADQRRFHQFVAFRIGEIQEQTDISEWKKVPSRWNVADDATKWGFD
FT                 SKALNSSRWVQGPEFLHKDESEWPEQSNDLITEEELRATVATHRRAEYDEI
FT                 IQFGRFLKGDLASIKCPEPEFSTAKSYWRQKGR"
FT   CDS           5173..6612
FT                 /product="BEL-603_AA-I_3p"
FT                 /translation="MPRTGILNSEELLEAERTIICLIQRAEFPEEHAVLNY
FT                 NRQLKNGDLKAIKKISKIYKLCPFIGADGVIRKDGRIGAAPWLTLETKFPA
FT                 ILPKNHYVTALIIDEIHRKFGHSNNETVVNEVRQRYHVSELRVVVRRVAQG
FT                 CQRCKVRKTVPRPPRMSPLPEVRLTPYIKPFTYTGLDYFGPLTVRIGRSQT
FT                 KRWVALFTCLTTRAVHLELAFTLSTESCKLAIRRFVARRGPPAEIFSDQGT
FT                 NFQGARKELKEQIQRMNSELSTTFTNTTTKWKLNPPYAPHMGGIWERLVRS
FT                 VKSGLAAMEISRSADEETLLTALAEVESMVNTRPLTYLPLDAAEDHALTPN
FT                 HFLLLSSNGVCQPAVIPQDEKSALRSNWNHVRVMLDRFWKRWIKEYLPAIT
FT                 RQSKWFGEQKPLKVGDLVISVNENVRNSWDRGVVVNVYPGKDGRIRRADVK
FT                 TTAGIFLRPVTQLAVLDVQDEGGIAEGTTSNTGRS"
XX
SQ   Sequence 6613 BP; 1890 A; 1547 C; 1679 G; 1492 T; 5 other;
     agaactttaa gattaactat cagttaatca tcaaatccag tcatgtcgaa ggctggttca        60
     catggaaaag ctaaccctag atctaatgca ggtgccgaca caacactgca ccaatgcatg       120
     atctgcagcc tcccgaacga agcagatcgg aagatggtcc agtgtgacgt atgtgaccac       180
     tggttccatt tcatgtgtgc gggtgtcaat gatagcatag aagatgagaa tcgaagttat       240
     gtatgcgtgg cttgtgctct acccgctccg tctatatcgt cgacgaccag cagtgttcga       300
     gaagcgagga tgcgactcga gatgcaacgg ttagaagagg agaagcgact tcaggagcgg       360
     ttacgagagg aacgagagaa gcaggaaaag acccttcaag aaatgacgat acgtttggag       420
     agagaacgcg gagagaaagc aattgcggcg atgctgactt tggagaagga acacattcag       480
     cagaagtata gtttacttca cacgcagctg aacgatgacg gagatgtagg tagcgcgcgt       540
     agccgagcga accgcggcac aacgagtaaa gttcaagatt ggatgaacca gaatacagcc       600
     gtgaccctaa gcaccaatac tgggagcaac cmcactgggc ttacgttaca accagctgtt       660
     tcagttgatt cgtccctaat taactcgtct gttgccatgg catctggcaa cacagcaaca       720
     ccatcccata atcagcaaga tttccagtct atccagccag tagagtcaca wcaagttaga       780
     gtgatttctc aatcagactg tgtatcgtcg ttagcaccca ccaatacgat tagttcgcct       840
     ctatcggtac caccacagat aaagcaacca gtgaggttcc ctgtcgatgc tttggtgcta       900
     taggaaccca atacctacac cgtcagcgag tgtacaggag gcctcaacta taccatccac       960
     gacatgtgat gacaacaatg tttttgttat ctcgcctcca acatgtacat cagcatcgta      1020
     cggacaactg ccaccggttc catgttcatc gagctcgcaa caacaatctg tccctcagac      1080
     tacatccgtt tcacaacact atccgcagcc atcaacagcg agacatggat cagcttatcc      1140
     agcagtcatg tcgtcgagat ccgtacagca tgttcagcat ggttcattac cgtggaatgc      1200
     gtcgttacca ccaccggtac atcagtcaac accaacaagc atgcagtctg ggaggcatcc      1260
     gctgatcggg actgtcggaa atcaatccaa cccgtataca tctcaacacc aggcagcata      1320
     tgggtgccat agacagcccc taggggctaa tgatgcagcc tacccagtag taagtcagta      1380
     tatccctacg gcgacggcgg taagtagcca accatggttc aatgacatgc gaaatatgta      1440
     ccaaaatcaa tgggtttccg ctccgaatca aaatttgtta acggctgggt cgcaaatgtt      1500
     tccaaatata atgggtaata ttagtagtca gggacttcaa gggcactttc caaaccaaat      1560
     caatcaattc actaacgcaa tgccaagtaa tataatgcca gctagtagtg tgggtttgaa      1620
     tatctccaat ttcccaacac aaagtgggtc agctccttgt ctgtcgactg gagcagagct      1680
     tgggccgaat gcccaacaac ttgcggcgcg tcatgttgtg ccgaaagatc ttccaccatt      1740
     cggcggaaat cctgctgaat ggccattgtt ttggagcagc tatgaaamtt caacgcaaat      1800
     gtgtggatat tcttcgtcag aaaatcttct gagactgcag cgatgtctaa agggagatgc      1860
     taggaaggcg gtcaacagtt tcctgctgca tccgtccaat gttggagaga tcatgtcaac      1920
     ccttcgtatg ctctatggcc gtccagacgc catcatcggc tctctgttga atgacgtcag      1980
     aaacacccca gcaccgaagc cggagaaact cgaaactctg gtgaattttg gacttgtggt      2040
     gcgcaacctc tgtgcgcatc tggtatccgc tggacagcaa atgcacttga ccaatcccat      2100
     tctcctccaa gaactggtag acaaactacc agccaatatc aagcttgggt gggcattgca      2160
     taaacaaaca gtagtggaag cagatcttcg gagtttttcg gactacatga gtctcatgat      2220
     caacgctgca agtagtgtta ctagcggaat cggagagtgc tccaaatcgg agcgtcagaa      2280
     aggaaaggcg ttcgtcaact ctgttagagc cgaggccaat gcggaaagca gtcgcgaaaa      2340
     taacaataag aagagcagcg gtggtaggaa tacgaataat tcgcaagcat taacaagtcc      2400
     aaggattcgt ccgtgcgcgg tgtgtcaaac ggacggacat aaaccaaaag attgtccttc      2460
     attcaaagcg aaaaatctcg ccgaccgttg gaagacagtc caagaagcac atttgtgcaa      2520
     gcgatgtttg taccctcatg gaaagtggcc atgcaaggct cctccatgcg gagctgaggg      2580
     ttgtcaagac aatcaccata aattccttca cccagggaat ccccaaaact catctggctt      2640
     cggaaacgtc gcttcgtcac cgtccaatac tggagttgtg acggttcatc agcactcaca      2700
     ccaaaacata ttgttccgga tcattcccgt ttcacttcat gcgaacggca aaacggcgaa      2760
     aactttcgcc ttcttggacg gaggatcgga ttcgactctg ctagagaatt caattgctaa      2820
     acagttgggt ctgtctgggc caacggttcc actctgtatg cagtggacaa atggagtaca      2880
     gcgaactgaa gaagaatccg agcgtgttga gttggaaatc tccggaaaca gttcaaaacg      2940
     ctacaagttg agtggcgtcc atacggtgtc gagcttagat ctgccacggc aaacggttga      3000
     tggcaacatg cttcaagcca agttcccgca tctcaaagga ttgcccatca caagctacga      3060
     tgcagcagtg ccgggaatac tcatcggact cgacaacact aagctgaaga cgacgttggt      3120
     aatccgggaa ggaaacggcg acgaaccagt cgcagcaaaa acccgactag gctggacagt      3180
     attcggaaaa gctggtacgt ctaatgtagc aacgtccaac cgagttctgc acgtgtgcca      3240
     ccaatcaaaa gatacggatc ttcacgaatt ggtgaaaagc ttcttcacga tagaaggagc      3300
     gggaaccgat tcgaacacat tagttgaatc taaactagaa aagcgagctc gagagattat      3360
     ggaggctact acggtacgtt tggactcagg aaagttccag acaggtcttc tttggagata      3420
     tgacaaaata gagtttcctg acagcaggcc tatggcagag agaaggctgc agtgtctcga      3480
     gactcgactg tctaagaatc caacgctcta tgaaaaagtg cgccaacaaa tggtcgagta      3540
     tgtcaccaaa gggtatgccc ataaagccac aaagcaggag ctggagcaag caagtcctgg      3600
     tcaaacctgg tatttaccac tgggcgtggt gagcaaccca aaaaagccgg aaaaagtgcg      3660
     tattgtgtgg gacgccgcag catcggttag aggagtctct ttgaattcgg ttctactcaa      3720
     aggaccggat cttcttcaat ctcttccaac agtattatgc cggtttagac aaagggaggt      3780
     ggccatcaac gctgatatta gggagatgtt tcaccaagtg tacatacagc ccgaagaccg      3840
     ccaagcccaa agatttcttt ggcgaaacaa cccgacggaa cgaatggagg tgttcgtaat      3900
     ggatgtcgcc atatttggcg caacatgttc cccgtgttct gcgcagtttg caaaaaacct      3960
     taatgctaag gaacacgcgg cagaatatcc aagtgccgca actgcaatag tcgaaaatca      4020
     ctatgttgac gactacttgg atagtgtgga cacaattgag caggcaatcc agttggcaac      4080
     ggaagtgaaa ttggtccatc aacgaggagg atttgatctt cgacactggc tgtccaaccg      4140
     aaaggaagta ttggagaagc ttggcgaagg atattccgat gagtctaaaa acttcgttat      4200
     gggaaaaggc tgcagttcag agcggatttt gggcatgatt tggctaccgc aggaggacgt      4260
     attttcgttc gccatagaat atcgaaaaga tctgggccgg ctactgaacg gagacgtcta      4320
     tcccaccaaa agagaactcc taagcctcgt aatgagtata tttgatcccc tggggctggt      4380
     ggctaattac gtcattcacg ggaaggtatt aatacaagac gtatggcgaa cgaataccgg      4440
     ctgggatgaa aaaataccgg atgaaatctt tccgtcgtgg caacgatggg tagtgtcgct      4500
     tcgtgaactg gcacagttgc gtatagatcg atgttatttt ccgggttata ctcctgcggc      4560
     attagaaacg ctggaattgc acgtgttcgt ggatgcgagt ttggcagctt acgcggccgt      4620
     agcctacttc cgcatagacg atcgtgggac gatccgctgt agcctcgtgt catctaagac      4680
     taaggtggca ccactcaagc aactctccgt acctagactg gagctacaag cagctgttct      4740
     gggtacgagg ttaatgaagt ctattattgg tggccatacc cttcccatcc gtagaaaggt      4800
     cttctggagt gattccaata ccgtcctggc ttggcttcgt gcagatcagc gtagattcca      4860
     ccagtttgtg gcgttcagaa ttggagagat ccaggaacaa accgacattt cagaatggaa      4920
     aaaggtgcct tcaaggtgga acgttgcaga tgatgccaca aagtggggtt tcgactcgaa      4980
     agctctcaac agcagtagat gggtgcaagg tcccgagttt cttcacaagg atgaatcgga      5040
     atggcctgaa caaagcaacg acttgattac tgaagaagaa ttgcgtgcaa ccgttgccac      5100
     ccaccgtcga gcagaatacg atgaaatcat acagttcgga cgtttcttaa aaggagactt      5160
     ggcaagcatc aaatgcccag aaccggaatt ctcaacagcg aagagttact ggaggcagaa      5220
     aggacgataa tctgtttgat ccagcgtgca gaatttccmg aggaacatgc cgttctgaat      5280
     tacaatcgac aattgaagaa tggcgatctc aaagcgatca aaaagatcag taagatctat      5340
     aaattgtgcc ctttcatcgg agctgatggt gttatacgca aagacggacg catcggtgcg      5400
     gcgccatggc taacccttga aacaaaattt ccagctattc tcccwaaaaa ccattatgta      5460
     acggcgttga tcattgacga gattcatcgc aaattcggcc attcgaacaa cgaaacagtt      5520
     gtcaatgaag tcaggcagcg ataccatgtg tccgagctcc gagtcgtcgt gagaagggta      5580
     gcccaaggct gtcaacgatg caaggtgcgc aaaacagtcc cccgaccacc gcgaatgagt      5640
     cctcttcccg aagtgcgtct aactccgtat atcaagccat tcacgtacac cggacttgat      5700
     tattttggtc cacttactgt gagaataggg cggagtcaaa ccaagcggtg ggtggctttg      5760
     ttcacctgcc ttactacaag ggccgtgcat ctggaactgg ctttcacttt atccacggaa      5820
     tcttgcaagc tggctatccg aaggttcgtt gctcgccgtg ggcccccagc ggagatattt      5880
     tcggatcaag gaacgaactt ccagggagcc cggaaagagc taaaggagca aattcaacgg      5940
     atgaatagcg aattgtctac aactttcacc aataccacaa caaagtggaa gttgaacccc      6000
     ccgtacgctc cacacatggg tggcatatgg gagaggttgg tcagatcggt gaagagcgga      6060
     ttggcagcta tggagatttc aaggagtgct gatgaagaaa cactgctcac agcgttggcg      6120
     gaagtagagt ctatggtcaa cacacgtccg ctcacatatt tgccattgga tgcagcagaa      6180
     gatcatgcat tgaccccgaa ccacttccta cttctgagtt ccaacggcgt atgtcagcct      6240
     gccgttattc cgcaggatga aaaatcagcg ctacggtcga actggaacca tgtgagggtc      6300
     atgttggaca gattctggaa gaggtggatt aaagagtatc tgccggcgat tacgaggcag      6360
     tccaagtggt tcggggaaca aaaacccctg aaggtcggtg acctggtaat ttccgtcaat      6420
     gagaatgtga ggaatagttg ggatcgtgga gtcgttgtca acgtatatcc aggaaaggat      6480
     gggagaatca gacgtgcaga tgtgaaaacg acagccggta tatttctgcg gccagtgacc      6540
     cagttggcgg tcttagacgt gcaggatgaa ggtggtatag ctgaagggac taccagcaat      6600
     acggggcgga gta                                                         6613
//
ID   BEL-603_AA-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-603_AA_;
KW   Pao_Bel_Ele73; BEL-603_AA-I; BEL-603_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-487
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 487 BP; 183 A; 93 C; 74 G; 137 T; 0 other;
     tgtgcgcagc ggtagaagac ccctcgtcac cggttaacac agccaactct cggttggcaa        60
     atcggtagac ttcaaccgtt tcagctatga cagactagcc ttttcatgca atctgacatc       120
     gtcaattttg cttatcacta tatctatacc aaacttcaca aaacacgtta aaaagttgaa       180
     tttcctaaag tttatttctt gaatttgtta gtttgcctag taagtattaa aataaattaa       240
     aaattgaaca taaaaacact aattaaataa atagtttaca aggtcacact tatctacaaa       300
     aaaaagcttg ttatacgaag acgaattgtg aacgaagaag actagttaat gtaagtaacc       360
     taaaaacata tgaatctatg aactaaaaac taaacaaata ataaaattta cagcttaaag       420
     cttactccga actaaaagga cgagtttgac tttgagaggt ccgaacgact tcgccgtctc       480
     cgtaaca                                                                 487
//
ID   BEL-604_AA-I repbase;    DNA;    INV; 5868 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-604_AA_;
KW   BEL-604_AA-LTR; Pao_Bel_Ele53; BEL-604_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5868
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4882-5451] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..1549
FT                 /product="BEL-604_AA-I_2p"
FT                 /translation="MAHKQPLNESYCLCESCHQSPSADRGMVACDECGKWF
FT                 HYMCVNVDESIKDHPWCCEACLLIRSRRHRSVSSTSSRRRFRELELKRLDE
FT                 EYALQQEYMRKRYEVMASCLEDEEEDNSQDGSSVNSSVSRTRKWINSQREA
FT                 HGNFGAGQACSLPSIPNVGPSYVVGHGESYEFTPFGRPESRVPTRKNTVTA
FT                 INQFEANVSRHVPSLPEPLTSVSSPHGLGRSQTLNAASYRGGSSIIPALWQ
FT                 IVSPGLAPTEHPNVRNATAQSSMPNNQPLVSREQQSTMIAPIAGPSPAQIS
FT                 ARQVWPKRLPAFSGVAEEWPIFISSFENSNAACGFSDVENLIRLQESLKGP
FT                 ALEIVRSRLVLPANVPKVIDTLRRIYGKPEVLIRSLIAKVRKIDPPKSERL
FT                 DTIIKFGIAVQQLCDHLDAANQQDHLRNPVLLEEMVEKLPASFKLEWVRFK
FT                 REEQQVSIRTFGNFMEKLLDEASEVTLLNPSSETTTKQESKSSAKPKGYVH
FT                 THSESEAVPN"
FT   CDS           1822..4308
FT                 /product="BEL-604_AA-I_1p"
FT                 /translation="MVHQRISKSSVVFRVVPVILINGSKEVATFAFLDEGS
FT                 SKTLLESSMARKLGLKGAVRPLDLKWTSGVTRTEKSSMNVRLTVSGKGSGE
FT                 RFLLDEVHTVERMNLPKQSVNFDDLVSRFKHLRGLFVENQADAEPTILIGS
FT                 DNLDLMAPIESRIGKKGEPVGLRCKLGWTVSGPVSSNASEEYCGVHQCDVS
FT                 MEQSLKNYFTLEEAGIACPYRVESDEDRRARGILEKTTRRIGNRFETGLLW
FT                 RTDEIRMPDSYAMAFRRMQNLEQRFKRNPDMQEKVARAIEDFVEKGYAHKA
FT                 STDELRRSQSGQEWFLPLNVVVNPKKPGKIRLTLDAAAKAGGTSLNDMLLK
FT                 GPDMLVSLLDIINHFRGRRIGFGGDVKEMFLQIRMRQPDTRFQKFLFRQDP
FT                 SKNPDVYVMDVVIFGAKCSPCNAHFAKDTNAREHASQFPAAADAIINRHYV
FT                 DDYFDSADSEDEAIQRAREVREVHSLGGFEIRNWVSNVPKVLEALGEEGKP
FT                 TKTLCYDKTLESERVLGLLWVPEEDVFTFSMGLKEKLIPYLVNKVRPTKRI
FT                 ILQCVMSFYDPVGFLSPLLVHGKIIIQETWRSGTDWDEPVTDEIFNRWLSW
FT                 TRILPAIETVKVQRCFFGDESINNITSVQLHIFSDAGDDAYGCVAYLRYRV
FT                 AGEVRCTLVGSKAKVAPLKLTSTPRLELQAAVIGARMMTTLLASLPVSIQE
FT                 QFLWVDSMTVLSWIRSDSRKYKPYVAHRIAEILHSTDINSWRYVPSKKNVA
FT                 DDMTKWGPGTMMDADGRWFNGPPFLYQAEELWPEQPKTRATVTEEIRPCYL
FT                 LHHVGITQPIIDASRISNWKILLRTVA"
XX
SQ   Sequence 5868 BP; 1597 A; 1305 C; 1596 G; 1343 T; 27 other;
     taatctcaaa gattaatttc ggtagctcac gatggctcat aaacaaccgc tcaacgaaag        60
     ctattgccta tgcgaatcgt gtcatcaatc accttcggct gatcgtggta tggtagcatg       120
     cgacgaatgt ggaaagtggt tccactacat gtgtgtcaac gtcgatgaat cgataaagga       180
     ccacccctgg tgttgtgaag catgcttgct gatcagatca cgacgacatc gtagcgttag       240
     ctccacatct tcaaggcgca gattcaggga actcgagctg aaacggctag acgaggagta       300
     cgccttacag caggaataca tgcgaaaacg gtatgaggtg atggcatcgt gcttggagga       360
     cgaggaagag gataatagtc aggatggtag ctccgtaaac agcagcgtta gtaggacgag       420
     aaagtggata aacagtcagc gagaggctca cggaaatttt ggtgccggtc aagcctgtag       480
     tttgccttcg atcccgaatg taggtcccag ctacgttgta gggcacggag agtcctatga       540
     attcacgccc tttggtcgtc cggaatcgag agtgccaaca cgaaagaaca ccgttactgc       600
     cataaatcag ttcgaagcga atgtatcacg tcacgttcca agcttaccgg aacctttgac       660
     ctcggtgtcg agcccacacg ggctggggcg tagtcaaacg ctaaatgcag catcgtaccg       720
     aggaggctcg tcgattatcc cagctctgtg gcaaattgta tcgccgggtt tggcgccaac       780
     ggagcatcct aacgttcgaa atgctactgc tcaatcgtct atgccgaaca atcagccgtt       840
     agtgtcgcga gaacagcaat ccacaatgat cgcaccgata gctggcccaa gtccagcgca       900
     aatttcagcg agacaagtgt ggcctaagcg gctgccagcg ttttctggag tggcagagga       960
     gtggcccatt ttcattagtt cgtttgagaa ttcgaacgca gcgtgtggat tttcggatgt      1020
     agaaaatctc ataaggcttc aagaaagtct aaaaggtcct gcactggaga tcgtccgtag      1080
     cagactggtg ctccctgcaa acgtcccgaa agtcatcgat actttacgtc ggatttatgg      1140
     gaaaccagag gttctcattc gctcgctgat tgcaaaggtt cgaaagatag atccaccgaa      1200
     atccgaacga ttggatacga tcatcaagtt tgggatcgcc gtacaacagt tgtgcgacca      1260
     cttggatgcc gccaaccaac aagaccatct tcgaaatccg gtgctgctgg aggaaatggt      1320
     ggaaaagctt cccgccagct tcaaattgga gtgggtccgt ttcaagagag aggaacagca      1380
     agtttcgatc cgtacattcg gaaactttat ggaaaagtta ttggatgaag ctagcgaagt      1440
     gacactgtta aatccgtcat cggagactac aacaaagcaa gaaagtaaat cgtctgcgaa      1500
     accgaaaggg tatgtgcaca cgcacagtga atcggaagct gttccaaats ctggtacgaa      1560
     aaccgaagct gttaaatcgc acgatgataa gccgtgcgca acatgttgca aggtcgggca      1620
     tcgcgcgcga aactgcgaag agttcaaacg attgacggtc aaagagcgtc ttcaattggt      1680
     gaaggaccga caactgtgcg ccgtctgctt atacaatcac ggaaacatgc gttgtcgtaa      1740
     caaaatgcag tgcaacgttc gggttgtaat ggcaggcacc acgctctact gcatcaggta      1800
     gaaccccaag agtcgagctg catggtacat cagcgaatca gcaaatcctc tgtagtcttc      1860
     cgcgtagtac cggtcattct cattaacggg tcgaaggaag tggcaacctt cgcctttctc      1920
     gacgagggtt catccaaaac gctattggaa agcagcatgg cgaggaaatt gggactcaaa      1980
     ggagcggtca ggccattgga tctgaaatgg acgtcagggg ttaccaggac tgaaaaatca      2040
     tcgatgaacg tacgtctgac ggtgtccgga aaaggatcgg gtgaacgatt tttgctggat      2100
     gaagtacaca ccgttgaacg gatgaatcta ccgaaacaaa gcgtaaattt tgacgatttg      2160
     gtttcaaggt tcaaacacct ccggggcttg ttcgtcgaga atcaagcgga cgcagaaccc      2220
     acgattttga ttggttcaga taatctcgat ttgatggcgc caattgaatc tcgcatagga      2280
     aagaaaggag aaccagtcgg tctgcgttgc aaacttggat ggacagttag tggaccagtg      2340
     agctcaaatg cctcagaaga atactgtgga gtgcaccaat gcgatgtttc gatggaacag      2400
     tcgctgaaaa actattttac gttggaagaa gccggaattg cttgtccgta tcgcgtggaa      2460
     tccgacgaag atcgaagagc tcgcggtatt ttggagaaaa ctactaggcg catcggaaat      2520
     cggtttgaaa ccggcctttt gtggcgaacc gatgaaattc gaatgccgga tagttacgcc      2580
     atggccttcc ggcgtatgca gaacttagag cagcgcttca aaaggaatcc tgatatgcag      2640
     gagaaggtag cccgtgccat cgaagatttc gtcgagaagg gctatgctca taaagcgtca      2700
     actgatgagc ttcgtcgcag ccaatcagga caggagtggt tcttgccatt gaacgtagtt      2760
     gtgaacccga agaaaccggg gaagattcgg ttgacgttgg acgcagccgc caaagcaggc      2820
     ggaacatctc tcaatgacat gctgcttaag ggtccagaca tgttggtctc tttactggat      2880
     ataatcaacc acttcagagg acgacgaatc ggatttggag gcgatgtgaa ggaaatgttt      2940
     cttcaaatcc gaatgcgcca gccagataca cgattccaga agttcttgtt ccggcaggat      3000
     ccatccaaaa atcccgatgt ctacgtcatg gacgtcgtca tcttcggcgc gaagtgttcg      3060
     ccgtgcaacg ctcattttgc aaaggacacc aatgctcggg agcatgcaag ccaatttcca      3120
     gccgccgcag atgccattat caatcgacac tatgtcgatg actattttga tagtgcggac      3180
     agcgaagacg aagccattca gcgtgcacgt gaagtaaggg aagtccattc tctcggcggg      3240
     ttcgaaatcc gtaattgggt gagtaacgta ccaaaagtac tcgaagcgct gggagaggaa      3300
     ggtaaaccaa cgaagacact ttgctacgac aaaacgttgg agtctgaacg agtgctgggg      3360
     ttgctttggg tgcctgaaga agacgtgttc acgtttagta tggggctgaa ggaaaagttg      3420
     atcccctatc ttgtgaacaa agtacgacct accaagcgca tcatcttaca gtgtgtcatg      3480
     agcttctatg accctgtagg attcctttct cctttgctcg tgcatggcaa aattattatc      3540
     caggaaacct ggagaagtgg aacggactgg gatgaaccag taacggatga aattttcaat      3600
     aggtggctaa gctggacaag aattctccca gccatcgaaa ctgtgaaggt tcaacggtgt      3660
     ttcttcggcg acgaatcaat caacaacata acttcggttc agctgcacat tttctcagat      3720
     gccggtgacg acgcctacgg ttgcgtggca tacctgcggt atcgagtagc gggagaagtt      3780
     cgctgcactc tggtgggctc caaagcgaaa gttgcgccac tgaagctgac ctcaacaccc      3840
     cgattagaac tgcaagccgc agtgattggg gcgaggatga tgacaactct gctggcttcc      3900
     ttacctgttt cgattcagga acaatttctt tgggtagatt ccatgacggt tctctcctgg      3960
     attcggtctg acagccgaaa atacaaaccg tacgtggcgc atcgtatagc tgaaattttg      4020
     cactcgacag acatcaactc atggaggtac gttccatcga aaaagaatgt tgccgacgac      4080
     atgacgaagt ggggaccggg aactatgatg gatgcggatg gaagatggtt taacggaccg      4140
     ccttttctat atcaagcsga ggaattgtgg ccagagcaac caaaaactag agcgactgta      4200
     accgaggaga tcagaccatg ctatctactc caccacgttg gcatcacgca acctattatt      4260
     gatgcctcac gtatttcaaa ctggaagata ctcttgagaa ckgtagcast agtgtatcgc      4320
     tttgtttcga attgtaagcg caaacgtkcc ggacaatcta tcgaagcggt aagaagcgcc      4380
     aaatccagga agtcgacctt accagccgta ctggtggaaa tacgacagga agagttagcg      4440
     aaagcggaac gtctactgtg gaggatcgtt caagccgatg cttttccaga tgaagtgaag      4500
     attttgaaaa ggaataggga wcttcctccg gatcagtgga tctccatcga caagtcgagt      4560
     maactgtaca aaacatcgcc atttttggat gaagacgacg ttatcagaat ggaagggaga      4620
     accgckgcag cggtgttcac cgmgatgtgt actcgattcc ctgttatatt gccgaggaat      4680
     catatcatta catcaaagat tttggaggat taccacgttc ggtatgcgca cgggtcmaag      4740
     gaaaccgtgg taaacgaagt acgacaggck tatttcattc ckaagctacg tacagctgtc      4800
     ggaaaagtca tcaacagctg cctgaaatgc cgacttcgga aaagcaagcc agtggtaccg      4860
     cgtatggcgc cactccctgt tcagcgaatg cagcctttcg tgcgtgcctt cagttacgta      4920
     gggctcgatt actttgggcc tatcgacgtt accgtaggaa gacgcaagga aaaacgttac      4980
     gtagcactgt tcacgtgtct ggtcgtgcga gctgtccatt gtgaggtggc gtatagtcta      5040
     agcactgagt cgtgcaagca ggcaatccgk cgattcattc ggcgacgtgg ttctcctgtc      5100
     gagatatttt cagacaacgg tacgaatttt cagggggcaa gtagagagct tcgtgatgag      5160
     ctggagagaa ttgatcgaga ttgtgcaaat acgtttacgg gtacaaacac gaagtggacc      5220
     tttaacccgc cgtctgctcc tcatatgggc ggagtatggg agcgaatggt gaggtccgtt      5280
     aaggaagcaa tggcagcatt aagcgatgga cggaggatga ctgatgaaat tctagtaacg      5340
     accctggccg aagccgaata tcttgtcaac tctcgtccgt tgacgtattc tggaacggag      5400
     gacgctgaac tggatgctat tactccgaac cactttctcc ttggcagcac ttcgggacaa      5460
     cacctgccgt tccaagtacc aatmwctgtg gcagaagagc tgaggagcag ttacaagcgt      5520
     tckttggcat tggcgaacga attctggamc agatggtgca gagaatactt gccgacattg      5580
     aatcaacgga gcaagtggaa cgtwgaaagc agatcgwtma aggcgggaga cctagtcttc      5640
     gtcatggatg atggtaaggg tgctgcagga gtccggggca tmgttgaaga ggtttttgct      5700
     ggagctgatg ggcgagtgcg acaagctgtg gtwcgaacga atggaggggt cttcaggcga      5760
     ccggcckctc ggttagcggt ccttgaaata gmtgataaac ctggcmaagc ttccgaaggg      5820
     gaktatgacc agggtttatg ggctggggas tgttcggata agcgggaa                   5868
//
ID   BEL-604_AA-LTR repbase;    DNA;    INV; 615 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-604_AA_;
KW   Pao_Bel_Ele53; BEL-604_AA-I; BEL-604_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-615
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 615 BP; 202 A; 97 C; 126 G; 190 T; 0 other;
     tgaacggtac ggcggtgaat cccccgacag attgttaaca atacgaatgc aaagagatag        60
     acgtcaatcg tgatgacaac catacctaag gcgagatgtt atagacgaaa aaacgtgtac       120
     accatatgtg atgcagatgt gctatatgat tgcgaatttt tatattgaat tgtgtcgaga       180
     aattactgaa tttaaaggct gataggatta gattaaagtt ggataaacca tatgaactgt       240
     aaagtgagtg aaacctgtca gaataagagt tctttgcgat attccctaaa tttatattct       300
     ttaggttagg cattactgta acccattgtt ggctgatcat aattccacgg ttattttgtc       360
     gcttaaggcg taagtttcta taattatatg atttattcct gatctaatgt gctattatgt       420
     gtagtaggac tttcgggcag aaagcgttgt gaggtcgtac gtgggattgt cagtaaggag       480
     aaaaattaat gtaagatacc ttgaaacgta accttgaact atccagaatt ctaaaatata       540
     catatatttt tagctttgag cgaaacacca aaaatcgctt cacagaagtt tttctaccca       600
     ctcaaagtcc gaaca                                                        615
//
ID   BEL-605_AA-I repbase;    DNA;    INV; 5967 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-605_AA_;
KW   BEL-605_AA-LTR; Pao_Bel_Ele189; BEL-605_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5967
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5021-5581] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4949..5926
FT                 /product="BEL-605_AA-I_1p"
FT                 /translation="MPKMQNPRCSAKSTRNGRSSGRLAAYTRPFSHVGVDY
FT                 FGPYLITVGRRTEKRWGVLLTCLTTRVVHIEVAYSLTTSSCIIALRNFIAR
FT                 RGTPLAFYSDRGTNFVGAQKELQKASELLEQNKIACEFTSPRTSWHFNPPS
FT                 SPHMGGSWERLIQSVKRNLQEIQGTRRLSDEELRNALTEIEFTLNCRPLTH
FT                 VPIDDESEPALTPNHFLLGSSDGSKPLTRNDESAATLRREYEVSQTLADYF
FT                 WRRWLRDYLPDITRRTKWFQKVKPIEEGDIVVIADPDHPRNCWPMGRVIGT
FT                 VNRDGQVRRATVQTSKGVYERPAVKLAVLDLASE"
FT   CDS           join(24..977,981..4151)
FT                 /product="BEL-605_AA-I_2p"
FT                 /translation="MSGRSKSSARTSESIRSKQSTRNKEKPPSGSKNKFTG
FT                 NSCHTCKSFDNSQMVQCDHCDDWHHFACVGVTQEIEKNSWCCPPCEKSKQQ
FT                 SSMTDVESEQKAKTKTTGSTTSKKPAETISETVVKKATGAIKKVPGVSKKE
FT                 SLVKTTKMQTRKAKARLAEQSERSKAASLVSASSIVSSRAQLEAEIKRVEA
FT                 EQTLLEQETKRKRDLFIKKLSLLEELAETMGELEVAEEQGANEKVNSWLGS
FT                 NNLQQEVGNGKHESNDDDSDEETDDSIDETATSDTSEEGDGDDGGSRSFVP
FT                 LRKSTPTRQTLAKLPNADRTCLNRSQTLTQEQIAARQVVSRDLPKFGGNPE
FT                 EWPMFISTFESTTKMCGYRDEENMIRLRNCLRDDALNAVRSFLMHPSTVMK
FT                 AISVLKLRFGQPQIIINTLREKILTMPPVRPEAMDRLIDFALSVQNLCATI
FT                 DACGRKEYKRDVTLLQELVGKLPPSIKLDWARYQRTHSKVNLFTFNNWVYS
FT                 VAEDACLVSGATVYNAKPIENRGKKSNKAYVNSHIEWRSEKQNRQDTKPSN
FT                 IKQSAAAPTEEKVPVNSSKGCPICKGWCKTLVKCERFVGLSYEARWSAVRE
FT                 LKICRRCLRQHGGTCDRKPCGINGCTFKHHPLLHKNMSVATNIPTIHEKEP
FT                 AVINEERSLNAHLSVKGARMFRNLPVTLYGTNGQVDCFAFLDDGSELTLID
FT                 RGVADSLSSSGAPIPLCLKWTGGTHRVEASSRSIDIKVSGSSGKIFHLADV
FT                 RTVEELRLPQQTLDVEQLVKSFPYLKGVPVTSYSMARPRILIGLKHANLSL
FT                 VRRTREGSAGDPIAAKTLLGWTIYGGCAGNLARDAHHTYHICECNLRFDES
FT                 LEKAVKQHFALESLGVSRPENPVLSTAEQRSQQLLQSLTRYVGDRYESGLL
FT                 WRHDNVRLPDSEPMARRRFECLERRMAQDESLARSLRKKIEEYCDRGYIRK
FT                 LTEEELAGQYERVWYLPIFPVKNLNKPNKFRIVWDAAASVHGVSLNSALLT
FT                 GPDELVSLPSVLQTFRQFRVAVVGDIREMYHQVRMRLPDQHCQRFFFRNDK
FT                 SEELSVYVMQVMTFGACCSPATAQYVKNRNAERFQIDYPRATDAIVNKHYV
FT                 DDMLVSEETEEAAIDLAITVRGIHAKAGFEIRNWLSNSSKVAAALNGASTE
FT                 EKDLNLTAELANEKVLGMWWNTTTDCFTFKLSNGRFDQSLIDGSRRPTKRE
FT                 VLRVLMSIYDPLGLISHYMMFLKVTLQDVWRTGIHWDAAIEEKQFKNWKTW
FT                 VKLLPNLEKLSIPRCYRQVTSACETTIVQMHTMVDASINGMAAVVYLRFEE
FT                 KGKVECVLVTGKTRVAPLKYLSIPRLELQAAVLGCRLAESVSNNLSIKISR
FT                 RLFWTDNRDVLC"
XX
SQ   Sequence 5967 BP; 1745 A; 1398 C; 1475 G; 1347 T; 2 other;
     wctttcaaat tcgtttatac gaaatgtctg gtcgcagcaa atccagtgcc cgaacaagcg        60
     aaagcattcg tagcaagcag tcaactcgta acaaagaaaa accaccttca ggtagcaaaa       120
     ataagttcac cgggaatagc tgccacactt gcaaatcgtt cgataatagc cagatggttc       180
     aatgcgacca ttgtgacgac tggcatcact ttgcgtgtgt tggtgttacc caagaaatcg       240
     aaaaaaatag ttggtgctgc ccaccgtgtg aaaaatcaaa acaacaaagc tcgatgactg       300
     atgtggaatc agaacaaaaa gcgaaaacca aaacaacagg ttcaacaaca tccaagaagc       360
     cggcggaaac aataagcgag acggtggtga aaaaggctac cggagccata aaaaaggtcc       420
     ctggtgtgtc caaaaaggaa tcattggtga agacaactaa gatgcagacg agaaaagcaa       480
     aagcacgatt agcggagcaa tccgagaggt cgaaggccgc ctcgctagtg tcagcatctt       540
     caatagtatc atcaagggcg caactggaag ccgaaattaa aagagtggag gcggagcaga       600
     cactccttga gcaagaaact aagcgtaagc gggatctctt cataaaaaag ctcagtctgc       660
     tggaagagtt agcggaaact atgggcgagt tggaggtcgc agaggaacaa ggtgcgaacg       720
     aaaaggtcaa ttcatggctg ggcagtaata atctgcaaca ggaggtcggc aatggcaaac       780
     atgagtccaa cgacgacgat tccgacgagg aaactgacga cagcattgat gaaaccgcca       840
     ccagcgacac gtcagaagaa ggcgatggag acgatggtgg aagtaggtcc tttgttcccc       900
     tacgaaaatc gacaccaacc agacaaacgt tggctaagct cccaaatgcg gaccgcacat       960
     gtctaaaccg ttctcaaaam actctcacgc aagagcaaat agccgctcgt caggtggtct      1020
     cgcgcgactt gccgaagttt ggtggcaacc cggaagagtg gccaatgttt atatccacgt      1080
     tcgaaagcac cacgaagatg tgtggttatc gcgacgagga aaacatgatt cgcttgcgaa      1140
     actgtcttcg agatgatgct ctcaatgccg tcagaagttt tttgatgcac ccttccacag      1200
     taatgaaagc catcagtgta ctgaagttgc ggtttggtca accccaaata attataaaca      1260
     cgctacggga gaaaatactc actatgccac cggttagacc cgaagccatg gaccggttaa      1320
     tcgactttgc cctctccgta cagaacctat gtgcaacgat agacgcgtgt ggacggaagg      1380
     aatataagcg ggacgtgacc ttattacaag aactcgtcgg aaagctgccg ccttccatca      1440
     aactagactg ggcgagatac cagaggaccc actccaaggt taaccttttt acctttaaca      1500
     actgggtgta ctcggtagct gaggatgctt gtttagtatc aggggcaaca gtctacaacg      1560
     ctaaacctat cgagaatcgt gggaagaaaa gtaacaaagc ttacgtaaac tcacacatcg      1620
     agtggcgctc ggagaagcag aatcgacaag acacgaagcc ttccaacatc aagcaatcag      1680
     ccgctgcacc aacggaagag aaagtaccgg tcaactcaag caagggctgt ccaatctgca      1740
     aaggatggtg caaaacttta gtcaagtgtg aacgctttgt cggattgtcc tatgaggcgc      1800
     gatggtcagc cgttcgagaa ctgaaaatct gccgtagatg tctgcggcaa catggtggaa      1860
     cttgtgaccg gaaaccttgt ggtatcaatg gctgtacctt taagcaccac cctctactcc      1920
     ataagaatat gtcagttgct acgaatattc ccaccattca cgaaaaggaa ccagcagtca      1980
     tcaatgaaga acgcagcttg aacgcccact tatcggtgaa aggagcccga atgttccgaa      2040
     atttgcccgt tacattgtac ggtaccaatg gccaagttga ctgtttcgcc tttctcgacg      2100
     acggatcgga attaactctg atcgaccgag gagttgcaga tagtttaagc tcgtcgggag      2160
     caccgatacc actttgccta aagtggactg gaggaacgca tcgcgttgaa gcatcgtctc      2220
     gcagcattga tataaaggtc agcggcagct ctggtaaaat atttcacctg gcagatgttc      2280
     gaactgtaga agaactacgc ctcccgcaac agactttgga cgtagagcaa ctggtaaaat      2340
     ctttccctta tctcaaaggt gtgcccgtta cttcatattc gatggcgcgc ccacgcattc      2400
     ttatcggcct caagcacgct aacttatctc ttgtacgacg aactcgcgaa ggtagtgcag      2460
     gcgatccaat agccgcaaaa actttgttag ggtggaccat atacggtggt tgtgcaggta      2520
     accttgcgcg agatgcgcac cacacctatc acatatgcga atgtaacctt cgattcgacg      2580
     aatctttaga aaaagctgtc aagcaacact ttgccctgga aagtctagga gtttcgcgtc      2640
     cagaaaatcc agtgttatct acagcagagc agagatctca acaacttctg cagtcattaa      2700
     caagatacgt gggagatcga tacgagtctg gtctactctg gcgacatgat aacgtgcggt      2760
     tgccggatag tgaacctatg gctcgacgca gatttgaatg cctggagaga cggatggcac      2820
     aagacgaaag cctcgcccgt tccctgagaa aaaaaattga agagtattgt gacagaggct      2880
     atattcgcaa gctgacagag gaagagcttg ctggtcaata tgagcgtgta tggtacctcc      2940
     caatttttcc ggtcaagaat ctgaataagc cgaacaaatt cagaatcgtg tgggacgctg      3000
     ccgcatccgt tcatggagtc tccctcaatt cggccctgct cacaggacct gatgaactgg      3060
     tttccttacc atccgtgttg caaacattca ggcaatttag agtggcagta gtcggtgata      3120
     tccgggagat gtatcaccag gtgagaatgc gtcttccgga tcaacactgt caacgattct      3180
     tcttccgcaa cgataagagc gaggagttaa gcgtttatgt catgcaagtg atgacttttg      3240
     gcgcatgctg ttccccggca accgcgcaat acgtcaaaaa tagaaacgcg gagaggttcc      3300
     aaatcgacta cccacgagca accgatgcca tcgtaaacaa acactacgtg gatgacatgt      3360
     tggtaagtga ggagacggag gaagctgcta ttgatctggc tatcacagtt cgcgggatac      3420
     atgccaaggc cggttttgaa atcagaaact ggctgtcgaa ctcgagcaag gtagcagcag      3480
     ccttgaatgg agcttcaacg gaagaaaagg acctcaacct aactgctgaa ttggcaaacg      3540
     aaaaggtcct ggggatgtgg tggaacacca caacggattg tttcacattc aagctctcca      3600
     atggacgttt tgatcaatct ctcatcgacg gaagtcgtag accgaccaaa cgcgaagtac      3660
     ttcgcgtttt aatgagtatc tacgaccctt tgggactgat ctctcactat atgatgtttc      3720
     tcaaagttac gctacaggac gtttggagga ctggtatcca ttgggacgca gctatcgagg      3780
     agaagcaatt caaaaattgg aagacttggg taaagctttt acccaacctg gaaaagctga      3840
     gcattcctag atgctatcga caggtaacct cagcttgcga gacaactatc gtgcaaatgc      3900
     atactatggt agatgccagt atcaacggaa tggcagccgt agtatacttg cggttcgaag      3960
     agaagggaaa agttgagtgc gtgttggtta ctggtaaaac tcgagtggct ccacttaaat      4020
     atttatcaat accgaggctt gaacttcaag ctgccgtgct gggctgtaga ttagccgaaa      4080
     gcgtctccaa caacctctcc atcaaaatct ctaggcgtct attttggaca gacaatcgcg      4140
     atgtactttg ctagttgcga tccgaacata ggcgctacag ccccttcgta gctgcacgcg      4200
     taggagagat attagacaca actacagtcg acaattggag atatgttccg tcaggtaaaa      4260
     atgctgccga tgatgggacc aaatggagtg gtcaaccaga cttaagttca acaagcagat      4320
     gggttaaagg accgaaattt ctatgggaat ccgaggacag ctggcccagg atgcctttca      4380
     taaactcaga aacggagact gaactacgat ccagtgttat gattcacctt gaagctccat      4440
     tacctgtcat cgtagctgcg tcgttctcta gttggagaag aatgatcctg gtgacttctt      4500
     acgtgcaacg gttcattgca aacactcgtc gtcgtcttca caagcagaat atacaagtgg      4560
     gtccagtgac catcgaggag atgcacgccg ctgagaggta ccacttccgc actgcccaaa      4620
     atgaagcgta ctcgcacgaa atttccatct tgagggcatc gagttcctca aagcagatcc      4680
     ccaagtcaag tccactatcg aagcttagtc cattcctaga tatcaacaat gttcttcgaa      4740
     tgagggggcg agtaagcgct tgcctctatg tgaacgaaga aacagcgaac cctattattc      4800
     tacctgccga tcatgctgtg acgtctctta tgcttaattc gtaccaccag aggtttcatc      4860
     accggaactt tgaaacggta gttaacgaag ttaggcagat gttccgaata cctaagctac      4920
     gaagacttat atcttcttta cgacgcaaat gcccaaaatg caaaatccga gatgttcggc      4980
     caaatccacc agaaatggca gatcttctgg gcgacttgca gcgtatactc ggccattctc      5040
     acatgtaggc gtggactatt tcggcccata cctcatcact gtaggacgtc gaaccgaaaa      5100
     gcgctggggg gtcctattga cctgcttgac gacgagggtg gtccacatag aggttgctta      5160
     ttctttaacg actagctcct gtattatagc gcttcgaaat tttatcgcgc gacgaggaac      5220
     gccgcttgcc ttttacagcg acagaggaac gaatttcgtc ggcgctcaaa aagaactaca      5280
     gaaggcctcg gaattgttgg agcagaacaa gatagcgtgt gagtttacaa gtccccgaac      5340
     ttcatggcac tttaaccctc ccagctctcc acatatgggt ggaagctggg aaagattaat      5400
     tcaatctgtc aagcgaaact tgcaggaaat tcaaggcaca cgcagactca gtgacgagga      5460
     acttcgtaac gcgttaactg aaattgagtt cactctcaac tgtcgtccat tgacgcatgt      5520
     accgatagac gacgagtcag agccggcgtt gaccccgaat cattttcttt tggggtcgtc      5580
     ggatggtagt aaaccgctta cccggaacga cgaaagtgca gcgacgttgc gacgtgagta      5640
     tgaagtatca caaacattag ctgattactt ttggcgaaga tggctgcgcg attatcttcc      5700
     tgacataacg cgacgaacca aatggttcca gaaggtaaag ccaatcgaag aaggggacat      5760
     cgtcgttatt gctgaccctg atcatcccag aaactgttgg ccgatgggcc gcgttatcgg      5820
     aacagttaat cgagacggac aggtacgacg agcgactgtg caaacatcaa aaggagttta      5880
     tgaacgacca gccgtgaaac tagcggttct cgaccttgcc agcgagtgat tgtaacccaa      5940
     atctgtgttt cggattaccg gggggac                                          5967
//
ID   BEL-605_AA-LTR repbase;    DNA;    INV; 508 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-605_AA_;
KW   Pao_Bel_Ele189; BEL-605_AA-I; BEL-605_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-508
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 508 BP; 181 A; 79 C; 93 G; 154 T; 1 other;
     tgtgacatgc ccctcgggca gtgcgcttca agcttcgagc ccctatcgga tacacggcgc        60
     tcatggaaag tggtgatata taatatctta taatctattg ttttctctac ctattgtgtg       120
     aactagagac tgaattgaga tcaaaacacg aacatgtgaa gtcataactt agtgaattta       180
     aactactgct tgctaaatta ccagattatt gtacttttgt gtagaaattt gcaacggtaa       240
     ckgtaaatat tagaagcttc aaaaatgaat taaacttatt attaacaatt attgtttaaa       300
     tagcttgcaa aactagagct ggatatttag agtgtgcgaa gagaagatta tgctggaatg       360
     aatactaaac gtgagttatt ttgaaaacta taaatctata aactaactaa ttcatgaaaa       420
     tatacaggaa tttgaaattc tcctctgaaa agccaggaca ggagtatttt atgatctcgg       480
     aaagaaattc aacgcagcat aagcaaca                                          508
//
ID   BEL-606_AA-I repbase;    DNA;    INV; 6154 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-606_AA_;
KW   BEL-606_AA-LTR; Pao_Bel_Ele199; BEL-606_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6154
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5181-5738] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..6152
FT                 /product="BEL-606_AA-I_1p"
FT                 /translation="MPETDLFDCQMCELANNIDDMVQCEGCTKWSHYGCVG
FT                 FDDGKKEENWRCAGCIAKSSSNSTGGDSNVQATDGQQKTRGSTGGAESISD
FT                 LAQLNLKLLEERKAVLLREIELQHSTQLEQRKLQLEKEAWQAKYDILNAKC
FT                 ESTSSTVGSGGLGNWISRMNQVAVSQYQQTSVSASTVTTSLNPRTRQQHTA
FT                 AGGGNATSVVTTSSRPGCSLYGSESTSFLPQITSTIALSANQPSSTYAVGQ
FT                 ATSYMGDFQPGVGANRPGSSTPVTSVNWVNPGANPTSSAQCLPPYVSSMEQ
FT                 LGGHPMPSGYVSHPYQVTSSLNNFAPVGQVAFSQYAHSSVGSGNPYLDSIN
FT                 TRYSYAPPPLPTSLPQTNPHVSQAPFSAQTIPDAQIDNSSPTPRQLAARHV
FT                 MPKELPSFSGNSEEWPMFFSAFNTSTEACGYSNVENLGRLQRCLKGGALEA
FT                 VRSRLLLPSSVPQVMQTLQLLYGRPEQIIYALLQKVRDVPAPKADNLCTVV
FT                 TFGMAVQNFCEHLEAAGQVLHLSNPVLLQELVDKLPANLKLDWVTFKRQFL
FT                 VTDLRVFSRFMTNLVSAAAEVTLTLDQKGPKPKKEEKQKGFVNAHATPSSI
FT                 VVTEKPKTEFVKAASPITCLVCGNPDHRVKECPIFKKMDSDDRWKVVQTHY
FT                 LCRVCLGKHGRKPCRSSTRCDVQGCQSRHHRLLHNETASSSPATKATTQGG
FT                 EMTPCKNPTEGVNAHHTQSSTLFRMLPVRLFSKGRSVETLAFIDEGSSVTL
FT                 LERSIADALQAKQTEMRLCLTWTSNISREEEGSCQVEVEISSVGGGKRYPL
FT                 KDVRTVESLALPAQTLHYKELADRFEHLRKLPVSDFESKAPGILIGAKNTH
FT                 LTATQQLREGRVGEPIAAKTRLGWAIYGSMPNGSNIASCNLHICGCDSDNT
FT                 LHELVKQYFTVENVGVSVDRSPDSDEDKRARALLEKTTRRIEGGFETGLLW
FT                 RHDIVEFPDNYAMAVRRLRCLERRFNTDPTLFESVQRQIMQYQQKGYIHEA
FT                 TNEELDAVDPRRLWFLPVGIVRNPKKPNKLRIVWDAAATVNGVSLNSMLLK
FT                 GPDLVQPLPNVLCGFRERKIAVVGDIMEMFHQLKIRKEDRYSQLFLWPNET
FT                 GPDPKIFVIDVATFGSTSSPCSAQFVKNLNATEHAEAYPRAAEAIVRRHYV
FT                 DDYLESFDSEEEACQVIEEVKLVHRLGGFTIRNWLSNSTAVLRRVGEAETK
FT                 TIKIVDDSGSQVERVLGMQWRSTEDVFVFSSEVDVESVIPTKRGILRCVMS
FT                 QFDPLGLLSHFLIHGRVIIQDIWRSKAGWDDTINEEILERWRVWTTKFKEL
FT                 EQIQISRAYFPGVTSSDIEDLQLHVFVDGSETAYACVAYFRATVNGKFECA
FT                 LVGGKAKVAPLKALSIPRLELQAAVIGCRLMKTLCSSHSLPISKRMLWTDS
FT                 KTVLSWIHSDHRRYRQFVACRIGEILSKSNPEEWRYVPSKANVADDGTKWA
FT                 RGPNLQADSRWFKGPEFLWKPEESWPRQTEPEGTNVEIRSCNVHQIMESSE
FT                 IVNWDRFSKFERLRRTVAYLYRFANNCRRKAKQQPLQYSHITREEVQEAEN
FT                 AIWRFVQQAEYQEEIIQLQKMKEGHKCRLKRTSPIYKLSPFIDEYGVIRMD
FT                 SRISGAIFIPYDAKFPIILPKGHRVTKLVVDWYHRSYLHANNETVVNEIRQ
FT                 RFHVSCLRVLVRNLSRNCMQCKVLKAKPLSPREAPLPEARLSPYTRPFSFV
FT                 GLDYFGPIQVKVGRSLVKRWVALFTCLTIRAVHLEVVHSLSTEACKMAIRR
FT                 FVVRRGAPLEIRSDNGTNFLGASHELIQQIQEINQHLSAVFTNATTKWVFN
FT                 PPSAPHMGGSWERLVRSIKIAFSALTTTKNPDDETLLTLMIEAEGIVNSRP
FT                 LTFVPLETESQAALTPNHFLLLSSRGVAQPPMTIPERPESLRTNWRMTTNL
FT                 VNQFWHRWVREYLPTIAVRTKWYEDTKDPKVGDLAIIVDPSVRNGWLRGRI
FT                 LSVIIGRDGRCRQVLVKTSSGVLRRPVTKVAILDIKPAERGDVEGNAVPPE
FT                 VLDLHYGSG"
XX
SQ   Sequence 6154 BP; 1694 A; 1507 C; 1604 G; 1346 T; 3 other;
     caaatctcca aaattgtggt gaamcacgca ggaacgcttg caccaggatg ccggagaccg        60
     atctatttga ttgccagatg tgcgagctcg caaataacat cgatgatatg gtgcaatgtg       120
     agggatgtac taagtggtcg cattatggat gcgtcggctt tgacgatggg aaaaaggaag       180
     aaaactggag gtgtgccggw tgtattgcga aatcatcttc caatagcacc ggcggagatt       240
     csaatgttca agctaccgac ggacagcaga agacaagagg ctctacagga ggggcagaat       300
     ccattagtga tctcgcacag cttaacctca aactgttaga ggagcgcaag gccgtcctgt       360
     tgagggagat cgaactgcag cactcaactc agttagaaca acgtaaactt cagctggaga       420
     aggaggcatg gcaagcaaag tacgatattc tcaacgcgaa atgtgaatca accagtagca       480
     cggtaggaag cggcggtctc ggaaactgga taagccgtat gaatcaggtc gctgtcagcc       540
     agtaccaaca aacatccgtg tcggcgagta cggtgacgac ttcattgaat cccaggacga       600
     gacagcagca caccgctgct ggaggaggaa atgcgacatc agtagtaacg acgtcatcgc       660
     gaccaggctg ttcgctgtat ggaagcgaat cgacatcctt tcttccgcaa attacttcta       720
     cgatcgcctt gtctgcaaat caaccatcaa gtacgtatgc ggtgggacaa gcaaccagtt       780
     atatgggaga cttccaacct ggagtaggag cgaatcgtcc gggatcatcg acgccagtga       840
     ccagtgtaaa ttgggtcaac ccaggggcga atccaaccag ctccgcccag tgtttgccac       900
     catacgtcag ctcgatggaa cagctaggag gtcatccgat gccatcggga tacgtaagcc       960
     acccgtacca ggtaaccagt agcttaaata atttcgcacc agtaggccag gtagcttttt      1020
     cacaatatgc tcacagtagc gtagggtcag gtaatcctta tttggattca ataaatacac      1080
     gctattccta cgctcctcct ccccttccta caagccttcc tcaaaccaac ccacacgtct      1140
     cacaagcgcc attcagcgcg caaacgattc ccgatgcaca aatcgataat tcgtcaccaa      1200
     cgcctcgcca actcgcggcg cgacacgtta tgccgaagga actgccatcg ttcagtggta      1260
     attcagaaga gtggcccatg ttctttagtg ctttcaacac ctccacagaa gcatgcggct      1320
     acagcaacgt ggagaacctt gggaggcttc aacgttgttt gaaaggtgga gccttggaag      1380
     cagtccgtag ccgcttactg ctaccctcat ctgtgccaca agtgatgcaa acgctgcagt      1440
     tattgtacgg tcgcccggag caaataatat atgctctact acaaaaggta cgagatgttc      1500
     cggcaccgaa agcggataac ctgtgtacag tggtgacctt cggaatggca gtgcaaaact      1560
     tctgcgagca tctggaggcg gctggccaag tgcttcatct atccaaccct gtcttgctac      1620
     aggagcttgt ggataagctt ccagcgaacc tgaaactcga ttgggtaaca ttcaagcgac      1680
     agtttctggt gacggacctc cgcgtattca gtcgtttcat gacgaacctg gtatctgcag      1740
     cggctgaagt cactctcacg ttggatcaga aagggccaaa accgaagaag gaggagaagc      1800
     agaaaggatt cgtgaatgct cacgctacgc cgtccagtat agtggtgacg gaaaagccga      1860
     aaacggagtt cgtcaaggca gcatcgccaa ttacctgttt ggtctgtgga aatccggatc      1920
     atcgggtgaa ggaatgtcca atcttcaaaa agatggattc tgacgatcgg tggaaggttg      1980
     ttcagactca ttacctttgt cgggtatgtc tcgggaaaca cggaagaaaa ccatgtcggt      2040
     cctccacgcg ttgtgacgta caagggtgcc aatcacgaca ccatcgactt ctgcataacg      2100
     aaacagcaag ttcatcgcct gcaaccaagg cgacaacaca aggaggtgaa atgacgccat      2160
     gcaaaaatcc taccgaaggt gtgaatgctc atcacactca gagctccacg ctgttccgta      2220
     tgttgccggt gcgcctgttt agtaaaggaa ggagcgtcga aacactggcc tttatcgatg      2280
     aaggttcttc ggtcacgctg ttggaaagga gcatagcaga tgctctgcaa gccaaacaaa      2340
     ccgaaatgcg tctctgccta acctggacca gcaacatcag ccgtgaagag gaaggttcat      2400
     gccaggtgga ggtcgagatt tcgagcgtcg gaggaggtaa acgatatcct ttgaaagacg      2460
     ttagaaccgt ggagtcctta gcgctaccgg ctcaaacgct gcactacaaa gagctcgctg      2520
     atcgtttcga gcatctccga aagctgccag tctcggattt tgagtccaaa gctcctggaa      2580
     tactcattgg agccaagaat acgcatctca ccgccactca acaattacgt gaaggtcgag      2640
     taggagaacc gatagcggcg aaaactcgtc tcggatgggc aatctatggg tcaatgccga      2700
     acgggtcgaa catcgcgagt tgtaatttgc acatctgtgg ttgcgattcc gacaatactc      2760
     tgcacgagct agtgaagcag tacttcacgg tggagaatgt aggagtttcg gtggatcgga      2820
     gccctgattc ggacgaagac aagcgggcca gagcattact cgagaaaacc actagacgga      2880
     tcgaaggcgg ctttgagacc gggttgctgt ggcgccacga catcgtggag tttcccgata      2940
     actacgccat ggcagtgaga cggctacggt gtctggaaag gcgctttaac acggatccaa      3000
     ctttgttcga aagcgttcag cgtcagataa tgcagtatca acagaagggg tacatccatg      3060
     aggcaacaaa cgaggagctg gatgctgtcg atccgagaag gttgtggttt cttccggtcg      3120
     gaatagtgcg aaatccgaaa aagccgaaca agctacgtat tgtgtgggat gcggcagcaa      3180
     cagtgaatgg agtatccttg aacagcatgc tattgaaggg cccggatcta gtgcagcctc      3240
     ttccaaatgt tctctgtgga ttccgagaac gcaagatcgc ggtggtggga gacattatgg      3300
     aaatgttcca tcaactgaaa atccgaaaag aagaccgata cagccaactg tttctttggc      3360
     ccaatgaaac cggtccagat ccgaagatct tcgtaatcga cgttgcgaca ttcggctcca      3420
     ccagctcccc atgctcggcg caattcgtta aaaacttaaa cgccactgag catgcggaag      3480
     cttatccaag agcagcggag gcgattgtac gtcgacatta tgtcgacgat tacctggaga      3540
     gcttcgacag cgaggaagaa gcgtgccaag tcatagaaga agttaagtta gtgcatcggc      3600
     tgggcggatt cactatccgc aactggctct caaactcgac agcggttctc cgacgggtcg      3660
     gggaagccga gacgaaaaca ataaagatag ttgatgatag cggatcccaa gttgagcgag      3720
     tactgggtat gcagtggagg tcgaccgaag acgtgttcgt attctccagc gaagttgacg      3780
     tagaatcagt tatccctacc aagcgaggca tcttacgatg cgtaatgagc cagtttgatc      3840
     cgctggggct cctgtcacat ttcctcatcc acggacgtgt gataatccag gatatctggc      3900
     gaagtaaagc tggttgggac gacacgataa acgaagaaat cctagagaga tggcgtgtat      3960
     ggacgaccaa attcaaggaa ctcgaacaga tccaaatatc acgtgcctat tttccgggcg      4020
     ttacgtcatc agacatcgaa gatttacagt tgcatgtctt cgttgacggc agtgagactg      4080
     cttatgcctg cgtcgcctat ttcagagcca ccgtcaacgg aaagttcgaa tgcgcacttg      4140
     tgggaggaaa agcgaaagta gccccgttaa aagcgctctc aataccaagg ctagagctcc      4200
     aggcagcggt cataggctgt aggctaatga aaacgctctg tagcagtcac agtctaccaa      4260
     tatcgaagcg aatgctttgg accgactcga aaaccgtgct ctcctggatt cattccgatc      4320
     accggcgcta ccgacaattc gtcgcttgca ggataggaga aattctttcc aaatccaatc      4380
     ctgaagagtg gagatacgtt ccatcaaaag caaatgtcgc agacgatggc acaaagtggg      4440
     ccagagggcc gaatctgcaa gccgatagcc gttggtttaa gggtccagag ttcttatgga      4500
     agcctgagga gtcttggcca cgtcaaactg aacctgaggg cacaaatgtc gaaattagat      4560
     catgcaacgt ccaccagata atggagagca gcgaaatcgt caattgggac cgcttttcca      4620
     aattcgaaag gctcaggcga acagttgcct atctttatcg ttttgccaac aactgcagac      4680
     gaaaagcgaa gcagcagccg ctacaatatt cgcacattac ccgtgaagaa gtacaagaag      4740
     ccgagaacgc catatggcga ttcgtgcaac aagccgagta tcaagaagag attatccaac      4800
     tccagaaaat gaaagaaggc cataagtgtc ggttgaaacg aaccagccct atctacaagc      4860
     tgtcgccctt catagacgaa tatggagtga tccgaatgga ctcgcgaatt tctggagcaa      4920
     tcttcatacc ttacgatgct aagttcccca taattctccc aaaaggacat cgcgtgacaa      4980
     aattggtcgt tgactggtac catcgctcct acctgcacgc aaataatgag acagtcgtca      5040
     atgaaattcg acaacgcttc cacgtttcat gtcttcgggt gctggtgcgg aatttatcaa      5100
     gaaattgtat gcagtgtaag gttctcaagg ccaaaccatt gagcccacgg gaggcacccc      5160
     ttcctgaagc gcgcctcagt ccatacactc gacctttcag ctttgttgga ctggactact      5220
     tcggtccaat ccaggtcaag gtcgggcgct cattggtcaa acgttgggtg gcactgttta      5280
     catgccttac catccgtgct gtccatctag aggtggtaca ttcgctatcc actgaagcgt      5340
     gcaagatggc aatacgacga ttcgtcgtgc gacgaggagc tccattggag atcaggagtg      5400
     acaacggtac caacttctta ggcgccagtc acgaattgat tcagcagatc caagagatta      5460
     atcagcatct gtccgccgta ttcaccaacg ctacaaccaa gtgggtattt aacccaccgt      5520
     cagcccctca catgggtgga tcgtgggaga gactggtcag atctatcaag atcgcttttt      5580
     cagccctaac gaccaccaaa aatccagatg atgagacact tctgacgttg atgatagagg      5640
     cagaaggcat agttaactct aggccactaa cgtttgtgcc tctagaaaca gaatcccaag      5700
     cggctctcac accgaatcat tttttgttgt tgagctcgcg tggagtcgct caaccaccaa      5760
     tgaccatccc agaacgtcca gagtccctta ggaccaactg gcgaatgacg acgaacctgg      5820
     tgaatcaatt ttggcaccga tgggtgcggg aatacctccc aactatcgct gtccgtacca      5880
     agtggtacga agatactaag gacccgaagg ttggagacct agctatcatc gtagatccat      5940
     cggttcgaaa cggctggctg cgtgggcgaa ttctttccgt tatcattggt cgggacggaa      6000
     gatgcagaca ggttcttgtg aagacatcta gcggtgtact acggcgtcct gtgacaaagg      6060
     ttgccatcct ggatattaag ccagcagagc gaggtgatgt tgaaggtaac gcagtaccgc      6120
     cggaagtgct ggacctgcat tacgggtcgg ggga                                  6154
//
ID   BEL-606_AA-LTR repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-606_AA_;
KW   Pao_Bel_Ele199; BEL-606_AA-I; BEL-606_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-390
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 390 BP; 129 A; 89 C; 64 G; 106 T; 2 other;
     tgttggggtc aaacctacgc cactgtaatc cgatcgcagg caaccctgct cgtcgtcaca        60
     aacacttatc aattgacaag ccgtcaaacc ttgacagata gcactgtcgt aatatccgct       120
     aaccattctt ctcwaaacca ttatttgtac cacacgaaca aggcagagtc agaatttgta       180
     gaaagatata gattatatag atcgtgaatt cgaaccgtca tcctgttgct ttaacgttga       240
     actaaaacta ggagaccaat tgtaagttaa attgtatkta ttacttgaac tacttactat       300
     tataaccatt cttaataaat agttggagct cgcttaacct ataaaacggc gtgctacaga       360
     aactccgaaa acgtccgaaa cgttccaaca                                        390
//
ID   BEL-607_AA-I repbase;    DNA;    INV; 6427 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-607_AA_;
KW   BEL-607_AA-LTR; Pao_Bel_Ele58; BEL-607_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6427
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5084-5668] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..6046
FT                 /product="BEL-607_AA-I_1p"
FT                 /translation="MTGKKDKKLAEDKLILKRVLATRDVVERFISEYDHER
FT                 DSGEVVVRLETLNRTNKEFLHIQSEIEKLDDEENFEHHMAMRNEFENRFCK
FT                 MKGFLLAKRPTERNHPLLNSTMTSSTLAPLHNVTGFHHRLPKIDLPKFSGD
FT                 ESRWISFRDNFLSMIHGNDDIPMVNKLQYLLQSLEGDARKPFESVDIQADN
FT                 YAPTWDALMKRYDNKRFLRKELFRRLFELPSMKRESAQELNTLVDDFQRHV
FT                 KALAKLGEPIQHWDTPLTFILCNKLDSYTLRAWEQETRQKDEVKYDELIEF
FT                 LTQQVRMLKSVSSDLQYRSQGPSIKVAGPAPKKSSTVKSIVNSATNEPKSN
FT                 VPQCHACPQKHQLFQCPTFANMPVLQRRELVSQRSLCWNCFRPNHQAKACK
FT                 SKFSCRTCHAKHHTLLHDQVAPARSTPNPAGSSNTSMQQPIPSTSANVGTA
FT                 GSSNPPEVNLSVQSSRSTVLLETVVLSIVDKHGKEITARALLDSAAMSNFI
FT                 TKKLANALATRQAVVDIAVAGIGESMKQIKRQISATIKSQSKPFSTTLEFL
FT                 IMKKPTANLPTIAINTASWNIPKLPLADPNFNVPGMIDIIIGGECYHEIHT
FT                 GNRLSLGDGLPFLVDTLFGWTVSGKTAINSSIAPPVCYLSTVDRSLETALQ
FT                 RFWELEAVDHGPTYSTEEKRCEEIYANTTTRTHSGRYVVRLPRSEDPQVTL
FT                 GDSRTIATRRFYSLERRLEKDSALKQTYHEFIDEYLHLGHMRKLDVVDDDV
FT                 PHCYLPHHPVFKESSTTTKVRVVFDASCKTSSAVSLNDTLLVGPVVQQPLV
FT                 NIIIRFRFHVVAFVADVEKMYRQVLHHSVDQHFLRILFRRNPSEPLATYEL
FT                 LTVTYGTAAAPYLATRTLLQLAQDEGDKYPDAVQAVVEDFYVDDLLSGADN
FT                 VEAAIKKRCQITNMLASAGFPLRKWASNEPDALAEVPPEDLAIEPLHDLQD
FT                 DQSVSTLGLVWDTRTDTLRFNVEMPLPAPILTKRKIISYIARIFDPLGLVG
FT                 PVIATAKMFMQRLWKLKTEDNHPYEWDRPLPPKLQEEWKKYHATLDILSEL
FT                 RIPRFVSFAGAPSIQLHFFSDASELAYGACCYVRSEGDDRITVRLLTSKSK
FT                 VAPLATKHSIARLELSAAVLSTRLFQKVEQSLRTTADVFFWTDSTTVLQWL
FT                 NSAPNRWKTFVANRVSTIQSNTEGHSWKHVPGIDNPADELSRGLMPTELPN
FT                 QSRWWNGPAWLSQSPSHWPDASIPQEESSLVAEEARKVTLVSLESEGVQFA
FT                 DHLFSRFSTYTKLRRVVAYCIKYIRSLRAVVQQSTEDRSLILTTVDLMKSD
FT                 QALARLAQQQTFSEELSELHATGVVKGAPLKWLKPRLSDDGILRVGGRLEN
FT                 ANASEASKHPIILSAKHPFSRLLADHYHKTLLHAGPQLMLSTLRQRYWILG
FT                 GRDLTRSTYHRCVKCFRIKPNLIQQSTADLPISRVTPARPFSISGVDYCGP
FT                 VYLKSPVRNRPPTKAYIAIFVCFSTRAVHIEPVSDLSTPAFLSALRRFIAR
FT                 RGRIQELHSDNGTAFKGAANSLRRLYEMLKINNSDREAIIRWCADQEIQWK
FT                 FIPPRAPHFGGLWEAAVKSRKHHLLREVGQTSLSWEDMTTLLAQIEMCLNS
FT                 RPLTPIPTESTDLEALTPGHFLVGSNLQAVPEADVANIPDNRLDHWQRTTK
FT                 QLQRIWTRWYPEYLAQLQARANKGCKSPVNLQLGRIVVIKEENLSPAQWPL
FT                 GRITKLHPGKDGIVRVVSLKTATAENVVRPVAKVALLPIQTEEDHQSTEP"
XX
SQ   Sequence 6427 BP; 1634 A; 1781 C; 1527 G; 1484 T; 1 other;
     ttggtccttc gagccggatc ggaggaagca tccaagccca aatcgacgcg cgaattggtg        60
     gtattcgcca ttgtggtaag tggtcagagg acgttgacca cagaaggtag gccattcaag       120
     ctatctctat tgatcagcaa attgctgcac acacgatcgg cgccaacctt tgcccccagt       180
     acagaagccc atagtacgta ctgtgtgagg aataacgtgt aacgttgcat gcttgtattg       240
     ctaggcgaag aacgatcgaa tcgtttgtat gtagaataag cgcacgtaga agtttggcaa       300
     aatcatatgc ggtggcatat aggctcaccc aattagcctg ttagataatt gccttaggtg       360
     cgctatacag tgtcgcacac atttgttggt tcggtggcaa acccaaataa atcatttaat       420
     ttttaattga ttttcaattt cctacgattg cgcggtggcg tttttagcgg atccgcgaat       480
     cgtttaagga gacacgtaac cgcgtcggga aggattattc gttacgattt tacgtgttct       540
     ctatcggtcg ttcgttccgt gttcgcgtag aagcatcacg tgacgcgacg ggaaggagat       600
     acacgttcga ttatccgtgg tgtttccgtc gttcgcgtac gagcagcaca acgcgacggg       660
     aaggagttat tcgtgcgatt ttgtgttgtt cacgtttcgg ttcgcgcagt caagtgattc       720
     gtggtggtag taagtgatga cgggcaagaa ggacaagaag ttggcggagg ataagctgat       780
     tctcaaacgg gtattggcaa cgcgagatgt ggtggaaagg ttcattagcg aatacgacca       840
     cgaaagggat tctggtgaag tcgtcgtgcg gttggaaacg ctgaacagaa ccaacaagga       900
     gtttctgcat atccagtccg agatcgagaa gctagatgat gaggaaaact tcgaacacca       960
     catggcgatg cggaatgagt ttgagaaccg gttctgcaag atgaagggct ttcttctcgc      1020
     caagcgaccc acggagcgga atcatccgct tcttaattca acgatgacgt catcaacact      1080
     agcgccgctt cataacgtga ctggattcca tcatcgtttg ccgaaaatcg acctgccaaa      1140
     gttctctgga gacgaatcgc gctggatttc gttccgggat aattttctat ccatgatcca      1200
     cggcaacgat gacattccta tggtgaacaa gttgcaatat ctgctgcagt ctttagaagg      1260
     agatgccagg aagccgtttg agagtgtcga tatccaagcg gacaactacg caccaacctg      1320
     ggatgcgctc atgaagagat acgacaacaa gcggtttttg cggaaggagt tgtttcggcg      1380
     attattcgaa ctgccatcga tgaagcgtga gtcggcgcag gagctgaaca ctctggtgga      1440
     cgacttccaa cgacacgtga aggctttagc gaaacttggt gaaccaattc agcattggga      1500
     caccccgctc acgttcattc tctgcaacaa gctcgattcc tacacgttgc gtgcctggga      1560
     gcaggaaact cgacagaaag acgaagtcaa gtatgatgaa ctgatcgagt tcctcacgca      1620
     acaagtccgg atgctgaagt ccgtctctag tgatctgcag tatcgttccc aagggcccag      1680
     catcaaggtg gccggcccag ctccgaagaa atcctccaca gtcaagtcca tcgtcaacag      1740
     tgctaccaac gaacccaaat ccaacgttcc acaatgccat gcttgcccac agaagcacca      1800
     gctgttccaa tgtccgacgt ttgccaatat gccagtcttg caacgtcgag agttggtttc      1860
     acagcgaagt ttatgttgga actgtttccg cccaaaccat caagcgaagg cgtgtaagtc      1920
     gaagttttcg tgcagaacgt gccacgccaa gcaccatacg ttattgcacg accaagttgc      1980
     accagcaaga tccacgccga accctgccgg ctcgtcgaac acgtctatgc agcaaccaat      2040
     tccatccacg tcagcgaacg ttgggaccgc tggatcgtcg aatccacccg aagtgaatct      2100
     atccgttcaa tcaagtagaa gcacggtcct attggaaacg gttgttctct ccatcgtcga      2160
     caagcacggc aaagaaatca ccgcccgagc acttcttgat tccgctgcga tgtcaaactt      2220
     catcaccaag aagctggcaa atgctcttgc cacccgtcaa gccgtcgtag atattgcagt      2280
     tgctggaatc ggagaatcaa tgaagcagat caagcggcag atctccgcaa cgatcaaatc      2340
     ccaatctaaa cccttttcca ccacactcga attcctaatc atgaagaagc ctactgccaa      2400
     tctacccact atcgctatta atactgcatc atggaacata ccaaagcttc cactagcaga      2460
     tccgaacttt aatgttccgg gcatgatcga cattatcatc ggcggtgaat gttaccatga      2520
     aatccacaca ggtaaccgtc tgtcactcgg tgacggtcta cctttcttgg ttgacaccct      2580
     tttcggatgg acagtctctg gaaaaactgc catcaactcc tccatcgcac caccggtgtg      2640
     ctacctgtcg acagtcgatc gatctctaga aacagcgctt cagagattct gggaactcga      2700
     agccgtcgat catggcccta cgtattccac tgaggaaaaa cgatgcgaag aaatctatgc      2760
     caatactacc acccgaactc actccggaag gtacgtcgta cgccttcctc ggtccgaaga      2820
     tccgcaagtc accctcggcg actctcgaac aattgccact cgccgcttct acagcctcga      2880
     gagacgcctt gagaaagatt ccgccttaaa gcaaacctac cacgagttca tcgacgaata      2940
     ccttcacctc ggtcacatgc gcaaactcga tgttgttgac gacgatgtgc cccactgtta      3000
     cctgccccac catccagtgt ttaaggagag cagcaccacc accaaggtgc gcgtagtgtt      3060
     cgacgcgtcc tgcaagacat cttccgctgt gtctttgaac gatacactcc tcgtcggtcc      3120
     agttgtgcaa cagcctctcg tcaatatcat cattcgcttc cgattccacg tagtcgcatt      3180
     tgtggcagac gtggagaaaa tgtatcgaca agtcctccat cattccgtcg atcagcattt      3240
     tctgcgcatc ctgtttcgtc gaaatccatc cgagccgctc gctacctacg aacttctcac      3300
     cgtcacatac ggtacggcag ctgctccata cctggccact cgaaccctgc tgcagttggc      3360
     ccaggatgaa ggagataagt atccagatgc cgttcaagcc gtcgttgaag acttctacgt      3420
     cgatgatttg ctctccggag cagacaatgt ggaagctgcc atcaagaaac gttgccaaat      3480
     caccaatatg cttgcatccg ctggattccc gttgaggaag tgggcctcca acgaaccaga      3540
     tgcactggcc gaagtaccac ccgaggatct ggcaatcgaa ccactccatg atctgcaaga      3600
     cgatcaatcc gtctcaacat tgggacttgt ttgggacaca aggacggaca cgctacgttt      3660
     caacgtcgaa atgccacttc cagcgccgat cctaaccaaa cgcaagatta tttcgtacat      3720
     cgccagaata ttcgatccgt tgggcctcgt cggccctgtg atagctaccg ccaagatgtt      3780
     catgcagcgg ctttggaagc tgaagaccga ggacaatcat ccctacgagt gggacagacc      3840
     gcttccacct aaattgcagg aagaatggaa gaaataccac gccacgttgg atattctttc      3900
     cgaacttcgg attcctcgat tcgtttcctt tgccggtgca cccagtattc agctacactt      3960
     cttttccgat gcgtcggagt tggcctacgg tgcctgttgc tacgttcgct ccgaaggcga      4020
     tgatcgtata accgtgagac tgctcacgtc caagtcgaaa gtcgcacctc tcgcaaccaa      4080
     gcattccatc gcccgtctcg agctcagcgc agccgtcctg tccaccagac tgttccagaa      4140
     ggttgaacaa tcattacgca caacagctga tgtcttcttc tggacagatt caaccaccgt      4200
     tctgcaatgg ctcaattccg ctccgaatcg ctggaaaaca ttcgtggcaa atcgagtatc      4260
     gacgatccaa tcaaacacag aaggacattc ctggaaacat gttcccggaa tagacaatcc      4320
     tgccgatgaa ctatcccgag gcctgatgcc aaccgaactg ccaaaccaat ctcgatggtg      4380
     gaacggtccg gcatggctct cacaatctcc cagtcattgg cccgatgcaa gcatcccaca      4440
     agaagagtct tcgttagtcg ccgaagaagc acgcaaggtt acgctggtat cgttggagag      4500
     tgaaggagtc cagtttgccg atcatctgtt ttcacgcttc tccacgtaca ccaaacttcg      4560
     tcgtgtggtt gcgtactgca tcaagtacat ccgttccctc cgagccgtag tacagcagtc      4620
     taccgaagac agatcgctta ttctaaccac ggtagatctg atgaagtccg accaagccct      4680
     agctcgttta gcacaacaac aaaccttttc ggaagaacta tccgagctac atgccaccgg      4740
     cgtcgtgaaa ggcgcaccgc tgaaatggtt gaagccgcgt ctaagcgatg acggcatcct      4800
     tcgcgttgga ggccggcttg agaacgctaa tgcatcagaa gcaagcaaac atcccataat      4860
     cctgtcagcc aaacatccat tttcccgctt gcttgccgac cactaccata aaactctcct      4920
     ccatgcgggt ccccaactga tgttatccac gttgcgccaa aggtattgga tccttggagg      4980
     gagagatctg actcgttcga cctaccatcg ttgcgtcaag tgcttccgca taaagccgaa      5040
     cctcatccag caaagcactg cagatttgcc gatatcacgt gtcacaccgg cgcgcccttt      5100
     ttccatttct ggagtggatt actgtggccc agtgtacctc aagtctcccg ttcgaaatcg      5160
     accgccgacc aaggcttaca tagccatttt tgtgtgcttc tccacgagag cagtgcatat      5220
     tgaaccggtt tccgacctgt ccacgccagc atttttatcc gctctacgtc gcttcatcgc      5280
     tcgccgcggc cgtatccagg agctccactc cgataacgga accgcattca agggtgcagc      5340
     aaattcgttg cgccgtcttt atgaaatgct gaagatcaac aacagcgatc gtgaggcaat      5400
     catccgttgg tgtgcggacc aggaaatcca gtggaagttt attccgccac gtgccccaca      5460
     tttcggaggt ttgtgggagg cggcagtgaa atcgcgcaag catcatcttc tccgagaagt      5520
     cggtcagacg tccctcagct gggaagacat gacaaccctg ctggcacaaa tcgaaatgtg      5580
     tctgaattcc cgtccactaa ctccgatccc aaccgaatcc accgacctcg aagcgctcac      5640
     acctgggcac tttctcgttg gctcgaacct gcaagcagtt ccggaagctg atgttgccaa      5700
     tattcctgac aaccgtctgg atcactggca gcgtacaacc aaacagcttc agcgtatctg      5760
     gaccaggtgg tatccggaat acctcgccca gcttcaagca cgagccaata aaggatgcaa      5820
     gtcaccggtg aaccttcagt tgggacggat tgtggtcatc aaggaggaaa acctttcgcc      5880
     ggcgcagtgg cctttaggcc gcattacaaa gcttcaccca ggcaaggatg gaatcgtccg      5940
     tgtagtcagt ctgaagacag ctaccgcgga gaacgtcgta cgcccagtcg ccaaggtggc      6000
     cctcctgcca attcaaaccg aagaagatca tcaatcaacc gaaccgtaag cagaccctac      6060
     aaagatcggt agagcagtcc gaaactgtct caacgcatgt ttggatagct aacaggtgat      6120
     tagcgttcca acccttttac cagtccctgt tcgttctacc gggtctctct tttcacagac      6180
     acctttctgc tctcgtcatc tcatcaactc gccgctctcg ttcgcatccc gtacgccgtc      6240
     tgctgaatga gcccattcag gcagcatcca actgatkaat gagatccgac ggcgcgacga      6300
     agctcatcgt gttcgccacc cgaagtcagc cgatttcgga gagagtagtg agagaggaag      6360
     catgctgaga gagttgaaac agtgtggccg tttcaaggtg gccggaatga tcagtacgct      6420
     gatcaaa                                                                6427
//
ID   BEL-607_AA-LTR repbase;    DNA;    INV; 601 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-607_AA_;
KW   Pao_Bel_Ele58; BEL-607_AA-I; BEL-607_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-601
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 601 BP; 185 A; 143 C; 120 G; 152 T; 1 other;
     tgtaaatatt tgtaaatagt ttaaattgta aatagtccta gagttaagta atktgaattc        60
     agaatcaaca ctgaatttga aaccagcaac cagtaactac aattgtatga cacactgtac       120
     ggtcaaattg tccacacacc acacaccacc tcacccattc aatcacatgt agaagaagca       180
     agaactgtat tacgtaacac acccaatacc cagcatcaag caaacagtac caaaatagac       240
     aaccaaaacg atcggtagcg tttgttcttt tcctcgtccg ttccgcgcaa taaatcaagt       300
     gcaagtgcaa tttaatcaat ctctatctcg aatccgaaac tatatcttcg gctgtggcca       360
     acggtggcaa ttaatcaacc cttgagaaga gatcgcgcgc gaacattatt ctgcggcaac       420
     caggtttcgt gcacctggtg tgaaatttag tgcaaattgt ggctcctgtt tcggtggata       480
     accgccacct gtgaagtgct gtggtggtga atttcacgat cccgtgattt ggtgcgccgc       540
     tattgacata gcgggtagaa aaacctccgg tggccggcaa ttagagctcc acgctcgaac       600
     a                                                                       601
//
ID   BEL-608_AA-I repbase;    DNA;    INV; 6427 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-608_AA_;
KW   BEL-608_AA-LTR; Pao_Bel_Ele157; BEL-608_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6427
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5484-6041] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1550..3034
FT                 /product="BEL-608_AA-I_1p"
FT                 /translation="MPRELPDFYGDPEEWPLFISSLRNSTTACGYSRAENL
FT                 ARLQRCLKGNALKSVRYNLLDPDSVPEVIRTLQTLYGRPEVIISKLIKTVR
FT                 DTPPPKSERLETLIDFGMAVRNLVSHLIAADQRSHLSNPVLLQELVEKLPA
FT                 SVKMQWAQHLAEFPEATLQTFSNFMISVVESVSKVVLYTGYQSQKHEKPKS
FT                 RERGYMHSHVEAMDPGQPSQYKSGVPKPCLICGKGGHHIKDCESFKKSSTD
FT                 SRWKTVSSLKLCRCCLGQHGRRACRSSARCEIDGCQFRHHPLLHTKSNTNN
FT                 PSTTRTTESHTYHHCGQSVLFRIIPVTISGPTKSIDTFAFLDEGSSATLVE
FT                 QSLAKQLNLQGPMIPLCLKWTANMSRSEESSQIVSFEISELARKKRFRLEN
FT                 ARTVKQLNLPSQTIRFEELQEQYHHLVGLPIRSYEKAVPRLLIGLRNLSLA
FT                 VPQRIKEGKRGPIAVKTRVGWCVYGSLTGALRVKPLQLPHLRMRRRRKVR"
FT   CDS           join(3219..3869,3873..6425)
FT                 /product="BEL-608_AA-I_2p"
FT                 /translation="MAFQRLKCLEGRMSRDPVLKENLHRQLQEYQNKVYAH
FT                 QATDDELNDTDLRRTWYLPLGAVVNPKKPNKVRLIWDASAKVDGVSLNTFL
FT                 LPGPDLLVPLPSVLFRFRQYSVAACGDIKEMFHQIHVTAADRQAQRFLWRD
FT                 TEAEPPTIFLMDVLTFGSTSSPTSAQFVKNRNAKDHEAQFPRAAEGIIKGH
FT                 YVDDCLDSFEDEQEAKLVVEQVRHVHSGGFEIRNWSSNSKAVLEHLGQESR
FT                 PTMKDLTAAGFSESERVLGMLWMTETDMLCFSTTFRPEIDALIRSNTRPTK
FT                 RQVLKTVMSLFDPLGLLASFLVHGKIIMQDVWRSGVKWDECVDDQIEQRWR
FT                 KWIELFERVGEIQIPRCYFESVNTGRYRTLQAHLFVDASEAAYSAVVYFRI
FT                 LDAGGNPQCSLVAAKTKVAPLKYVSIPRLELMAAVLGARLLTFVGENHTIP
FT                 IHQRFCWSDSNTVLAWLRADHRRYTQFVACRVGEILTLTQENEWRWVPSRF
FT                 NVADEATKWGKGPCFDAESRWINGPEFLGLSEDQWPRSTALNPATDEELRP
FT                 CHLHHEEAQSLIDFERFSNWNRLLRTLAFVFHVFTIRKARETNAKVGKEPT
FT                 HEDLKAAEIQILKIVQWSVYPDEMSIISKNQDLPVDQQRPIDKSSFLYKLS
FT                 PMMDQNGVLRIDSRTGAARVDAFDLKYPVILPRKHHVTYLLIDHYHRKYLH
FT                 CNAETIVNELRQKYYIPRIRVAVRTVTKLCQWCKVYKVQPSVPRMGPLPEA
FT                 RLSPGVRPFSYIGIDYFGPILVKVGRSNAKRWICLITCLTIRAVHVEVAYD
FT                 LSTQSCVACIRRFVCRRGAPLEIYSDNGRNFVGADRILRDQIKRIDEATAA
FT                 TFTNALTKWFFIPPSAPNMGGSWERLVRSVKAALTNIPQDRKLDDEALLTY
FT                 LAEAESIVNSRPLTYLPLDAPEQEALTPNHFLLGSSSGVKQPPANLGSSRI
FT                 VRNTWDTLQANLNHFWTRWIREYLPTLTRRTKWFGNVKSVGLNDLVVIIED
FT                 NKRNGWTRGKILEVVKGRDGIVRQAVVQTSSGVFRRPVSKLAVLDVAGSSK
FT                 AEADTHPYGEG"
XX
SQ   Sequence 6427 BP; 1822 A; 1503 C; 1589 G; 1509 T; 4 other;
     aaaacttaaa gaaattcgac acagaatgtc gagtacgaac tccgataacg atgatgccta        60
     cgtctgtgct ggatgcgatc gccccgagac cgccgatgac atcgtacagt gcgatacatg       120
     ttctacttgg tggcactttc tcctgtgcca aggtagacgc atcggtagca gataagtcca       180
     gttggatatg cgtcaaatgt ttgcctccgc cgcctccatc ccgtccggca tctgttcgca       240
     ctacatcatc gaatcggaga gcccttctgg agatcagctt acgaagattg gcagaagaaa       300
     aggagctgcg caaaaaagag ctggagatca acatggagag agaatttgtg aaggcaaagt       360
     acgatcttct ggagcagtgt gcgttggacg aggaaacaga aactcgcagc gtccgcagca       420
     gagtagagct tagtgacatt tgaacacacg tagactagca tacactcgtc atacacagtt       480
     tgtttttgtt ttcctcaaag aaacttgcac accctttcca gattcatcaa aatgcatatg       540
     gaaatattac ccaatttgaa aaatttacac ccggattctg ggtgtttttc gagacagagt       600
     gcatattgtt ttcctctaag gttcacaact acttctacac ttgggcaccc ataccattgg       660
     gcgtgataac cactatagaa cagattgaag cccgagatcg agagaaccaa gttcacgaat       720
     gggtcggcca agcagcagcg tcgctccgtg agagcagatc gctcactgac ccgacgacac       780
     cctctttccc tgtggacatc agtactaaca gaacccccgt cggtcaatat catgacgatg       840
     aagacggtgc gataggcaca accgaaacaa acgctggtcg ttccacgcca aaaccaaaca       900
     cagatgtcga tcgagctgac aatctgaatg atgatgcgtt gagcgaggtg aacgattgca       960
     acaagagcaa aaatatttcg aagcgcagag ttgtcattaa acgtagccat aagggagacg      1020
     acgagaagat gacgaaagga acctctgaag actaccagct attaaaatcg cagctcaaaa      1080
     aaaaaaatgt caggaagcat cgaagctcga tcgccaggct ctgcaagatc ttcaagacca      1140
     gcttcgggaa tgtcagctga ggctgcggca gcgcagtgtg gaaccccggg cgctcgaaaa      1200
     tcaatcaatc tggccgctta gagatgtgtc gaggggagca attgctaaaa ctaatcttag      1260
     gccagcgccg acggaatcct ctttacagca aatgaatagg aatcaggcca gggtaaccga      1320
     gaatgtagtt ccggtgtccg atacccgcga ttttgattcg ataggcccct tccaacacga      1380
     aggtcgtggt acgcacgagc agtcgcgtaa caacttcgcg cgctcagstg agatcggcct      1440
     tgtcagcacc ccacaaagac cgccgccagc caatcacggt caaacatcgg attcattgtt      1500
     tctggaagtg cgtcgaccgt caccagaaca gctggcagca aggcaggtga tgcctcgaga      1560
     attgccagat ttctatggcg accccgaaga atggccgtta tttatcagca gtcttcgcaa      1620
     cagcactaca gcatgtgggt acagcagagc agaaaacctg gcacggttgc agcgttgctt      1680
     gaagggcaat gcactcaagt cggtgagata caacctgctg gatcccgact cggtgcctga      1740
     agtgatacga acgctacaaa cactctacgg acgtcccgaa gtgataatta gcaaactaat      1800
     aaaaaccgtt cgtgatacac cgcctccgaa gtcagagcgg ttagaaaccc tgattgattt      1860
     cggcatggct gtcaggaact tggttagcca ccttatcgct gcagaccaac gcagtcacct      1920
     ttccaatccc gttctgttac aagagctggt agaaaagcta ccggccagtg taaaaatgca      1980
     atgggcacaa catttagcgg agtttcccga agcgacgcta caaaccttca gtaatttcat      2040
     gatatcagtc gtggaatcgg tgagcaaggt cgttttgtac accggttatc aaagccagaa      2100
     acatgagaag ccgaaatcca gagaaagagg atatatgcat tcgcatgtag aagcgatgga      2160
     tcctgggcaa ccgagccagt ataagagtgg tgttccaaaa ccctgtctga tctgcgggaa      2220
     aggcggtcac catatcaaag attgcgagtc gttcaagaaa agtagcacag atagccgttg      2280
     gaagaccgtc tcatcattga agctttgtcg ttgctgtttg ggacaacatg gacggagagc      2340
     gtgtagaagt tcagctcgtt gcgagattga tgggtgccag ttccgacacc atccgctact      2400
     gcacacgaag agcaacacca acaatccttc aactacgaga acgacggaaa gtcacacgta      2460
     ccatcactgt gggcagtccg ttttattccg tattattcca gtgactatat ccggcccgac      2520
     aaaatcgatt gacaccttcg cttttctaga cgagggttct tcagcaacgt tggtggagca      2580
     aagtctggcg aaacaactaa accttcaagg tcctatgatt cccctttgtt tgaaatggac      2640
     cgccaatatg tcccgttctg aggaaagttc tcaaatagtt tcctttgaaa tatcggagct      2700
     agctagaaag aagcggttcc gtttggaaaa tgccaggacc gtgaaacagc tgaacctgcc      2760
     ttctcaaaca attcgttttg aagaactcca agaacaatat catcatctcg ttggtttgcc      2820
     tatccgcagt tatgaaaaag cggtacctcg attgctgata ggattgcgaa atttgtcact      2880
     agcagtgcca caaaggatca aggaaggaaa gaggggacct atagcagtaa agacacgtgt      2940
     tggttggtgc gtatacggga gcctaacggg agcattacga gtcaaaccac ttcaattacc      3000
     acatttgcga atgcgacgcc ggagaaaagt tagatagcct gatccgtgag tattttgacg      3060
     tggaagacgc cggactccga tcggtcaagc cgctggagtc aaatgaagtt caacgagcca      3120
     aacaaattct ggaacaaact actcgccgga acgggaaccg ctttgctact gggctattgt      3180
     ggaagtacga ccagtttgag cttcccgaaa gcttcccaat ggctttccaa cgtttgaagt      3240
     gtttggaagg acgaatgtct cgcgatccag tattgaagga aaacttgcat aggcaactgc      3300
     aggaatacca gaacaaagta tatgctcacc aagccacgga tgacgagctt aacgataccg      3360
     atctccgacg tacktggtat cttccgctgg gtgcagtcgt caatccgaag aagcccaaca      3420
     aggtkcggtt aatttgggac gcatctgcga aggttgatgg cgtgtcactg aacacatttc      3480
     ttctccctgg ccccgatctt ttggtaccat tgccctccgt tctatttcga ttccgccaat      3540
     actcggtggc agcatgcggt gatataaaag agatgtttca tcaaattcat gtcaccgctg      3600
     ctgaccgtca agcacagcgt ttcctctggc gcgacaccga agcagaacct cccacaatct      3660
     ttttgatgga tgtcttgaca tttggatcta caagctcgcc aacgtccgca caatttgtta      3720
     aaaataggaa cgcaaaggat cacgaagcac agtttcctag agcggctgaa ggcattataa      3780
     agggccatta tgtcgacgat tgcctcgaca gtttcgagga cgagcaagag gcaaagttag      3840
     ttgtcgagca agtacgtcat gtacattcga mtggcggatt tgaaatccgc aattggtcta      3900
     gtaacagtaa ggctgttttg gagcatctgg gacaagaatc taggccgacg atgaaagatt      3960
     tgacagcagc tggatttagc gagtcggaaa gagtcctcgg catgctttgg atgacggaaa      4020
     cagatatgtt atgtttctcc acaacgttta ggccggaaat tgatgcactc attcgttcga      4080
     acaccaggcc gaccaaaaga caagtactca aaactgttat gagccttttc gacccgctcg      4140
     gtctacttgc ctcattcttg gtacacggga aaatcattat gcaagatgta tggagaagcg      4200
     gagttaaatg ggacgaatgt gtggatgacc aaattgaaca acgatggcgc aaatggatag      4260
     agttgttcga acgagttggc gaaatccaga tacctaggtg ctatttcgaa tcggtcaaca      4320
     cgggacggta cagaacactg caagcacatc tgttcgtaga cgccagtgaa gcagcctatt      4380
     ctgctgttgt gtacttcagg attctggatg ctggaggcaa cccacaatgc tctctagtgg      4440
     cagctaaaac caaggttgct cccttaaaat atgtgtcgat accacgtttg gaactaatgg      4500
     cagccgtttt aggagcgcgt ttattaactt ttgtgggaga gaatcacacg atcccgatac      4560
     atcaacgatt ctgttggtct gactccaata ctgtattagc ttggcttcgc gcagatcacc      4620
     gaaggtatac gcaattcgtc gcctgtcgag tcggagaaat tctgacgttg acccaagaaa      4680
     atgaatggag gtgggttcca agcagattca atgtcgctga tgaagccaca aaatggggca      4740
     aaggaccatg tttcgacgct gaaagccgat ggataaatgg accggaattt ctgggtctgt      4800
     cggaagacca atggccgcga tctacagctc tcaaccctgc aacagatgag gaactacgcc      4860
     catgtcactt gcatcatgaa gaggctcaat ctcttatcga ttttgagaga ttttctaatt      4920
     ggaatcgatt gctgcgcact ctagccttcg tctttcatgt tttcaccatc cgaaaggcac      4980
     gggagacaaa cgccaaggtt gggaaagaac caacgcacga agacttgaag gcagcagaaa      5040
     ttcaaatcct aaaaattgtt cagtggagcg tatatccaga cgaaatgtcc atcatatcga      5100
     aaaatcaaga tttgccggtt gatcaacagc gccccataga taaatccagt ttcctctaca      5160
     aactttctcc gatgatggac caaaacggag ttttgcgcat cgacagccgc actggtgcgg      5220
     cacgtgtgga tgcttttgac cttaagtatc ctgtgatact tccacgaaag catcatgtga      5280
     cttacttgct tattgaccac tatcacagaa agtatttgca ctgcaatgca gagacaattg      5340
     taaatgaact ccgacagaaa tactacattc ctcggattcg agttgctgtg cgaaccgtta      5400
     caaaactgtg tcagtggtgt aaagtttaca aggttcaacc gtcggttccg aggatgggac      5460
     cattgccaga agctcgccta tctcctgggg tacgaccgtt cagttatata ggcatcgact      5520
     attttgggcc tatcctcgtc aaggttgggc gatctaacgc aaagaggtgg atttgtctta      5580
     tcacgtgcct cacgattcgt gcggtacatg ttgaagtagc ttacgacctc tcaactcaat      5640
     cttgtgtggc ctgtatacgg aggtttgtat gtcgaagagg tgcaccgttg gagatatatt      5700
     ccgacaacgg gcgaaacttt gttggagctg atcggattct tcgtgaccaa ataaagcgca      5760
     tagatgaagc gacggctgcc acgttcacta atgcgctgac taaatggttt tttatccctc      5820
     catccgctcc caacatggga ggctcatggg agcgcctagt tcgttctgtt aaagcagcgt      5880
     tgaccaacat acctcaggac cgaaagctag acgatgaagc cttgttgacg tacctagcgg      5940
     aagcagagtc aatagtgaat tctcggcctt tgacctattt gccgcttgat gctccagaac      6000
     aagaggcact caccccaaat cacttcctct tagggagctc aagtggcgtg aagcaacctc      6060
     cagcgaacct aggatcttca cgaatagttc gcaacacttg ggatactcta caagctaatc      6120
     taaatcattt ttggactcgc tggatacggg agtatctccc aacgcttacc aggcgcacca      6180
     aatggtttgg aaatgttaaa tcggtgggct tgaatgatct agtggttata atcgaagata      6240
     acaaacgcaa cggatggact cgaggaaaaa ttttagaagt agtaaagggc agagacggaa      6300
     tagttcgtca agctgtagtg cagacatcga gtggagtatt cagaaggccg gtatccaaac      6360
     tggcagtgct ggatgtcgca ggaagcagta aagctgaggc tgacactcat ccttacgggg      6420
     aggggga                                                                6427
//
ID   BEL-608_AA-LTR repbase;    DNA;    INV; 678 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-608_AA_;
KW   Pao_Bel_Ele157; BEL-608_AA-I; BEL-608_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-678
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 678 BP; 209 A; 120 C; 131 G; 192 T; 26 other;
     tgttggcgac acagctccac gtttggcaac cctkccaaca gtgaatcgct takgcgaaac        60
     ggagagaacg gagcctagat acamcacacg aaggcgacaa tagagtgtag tcgamagtsa       120
     wagcgatagt gcacgtgcct agatggtcta tgggwtamat tgcsaatatt camtttatga       180
     ttcttcaawt tactaaattt aacaatactk tgtaataagt accgatagtg aamwtcgaaa       240
     tcagttgtag ctcagtagtg gctgstgata ctgwggtwtg ctggtsgtwt ggtcgagaka       300
     wgttktattg taggttagaa wgtgaattkc ccgatggatt acagtawcct waagattaaa       360
     ctatatctct atagcaatcc caggcaccag tattgagccg ttattctagc cgtacgtcag       420
     cgagtatgat aaacggacta agtatgctat catttctcat ctatgtttca taaaccccta       480
     actgatcatc tcatcattta tatagagtaa actaccgtaa aaataaaccc ttttgttcga       540
     ggaatattgc acacgaaagt aaaccgaatt tgtaagctga aatcacgtat gtaaaattta       600
     gaactatact aatttaataa atattccagc tttaggcgtt acgctaaaaa gaatcggcgt       660
     ttttgttatt ctcgaaca                                                     678
//
ID   BEL-609_AA-I repbase;    DNA;    INV; 6675 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   10-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-609_AA_;
KW   BEL-609_AA-LTR; Pao_Bel_Ele71; BEL-609_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6675
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [3]
RP   1-6675
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
CC   LTRs are 99% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(50..6184,6099..6674)
FT                 /product="BEL-609_AA-I_1p"
FT                 /translation="MSSGDPVADSREQRDADQQSQCIICNQPNHADRKMVQ
FT                 CDGCDHWFHFRCVGVNDSIEDPERSFKCAACTVPDPPGSTVSTSASVREAR
FT                 IQLEVQRLADEKRLQEKMHAEREKQERDLLEMTLRLERERRDKAMKEKFAL
FT                 EKDYLQRKYDLLHTQLDDDGDAVSVRSRYQPRSERVVDWITSNPAVTMSAN
FT                 TGTIPTGLTSQLEPITHSMQQTSASAITNANRVHPAPGFISKVPPTAPSTT
FT                 TSDSTPLPCYSNASITQAEMQNPVASVQQNFPSTSIDTSNMFVISPTIVST
FT                 ASLSLPPLPTLPASSVPPYRHSFVPASFSSQPPQLQAIPSVPSSSLYRIGT
FT                 SHTAVASCLPSGGIPSVWQQSTYVSMPPPTHHSTPTTVASERRPVGEQHLY
FT                 NTQLVRSQGDQHNSASVPVSRISMRPGLGENGSSVGQYAQPTAVVSNTYGL
FT                 HGMQSSYQNYLPNYWFPGANNAPLQILPQQENIASVARPALHLGGNTSQSG
FT                 SQGIQINQNPVLSSQFVPGGPQRASLHGVGSNVPMSQEPNISGFPSAPLDY
FT                 APNTQQLAARHVVSRELPIFDGNPAEWPMFWSSYTTSTQMCGYTGAENLLR
FT                 LQRCLKGEARKAVNSFLLHPANVDDIMSTLRTLYGRPEAIINTLLNDVRST
FT                 PTPKPEKLETLVNFGLVVRNLCAHLVSAGQEMHLANPILLQELVDKLPANV
FT                 KLGWAMHKQSVAVADLRTFAEYMNVIINAASSVSSGITEVTKAERQKGKAF
FT                 VNSVRLENNSKSNQRTEKSSSSGKEFVESKASTAPKVRPCAVCQVHGHKPK
FT                 DCSVFKTKSLGERWKAVQEAHLCKRCLYPHGKWPCKAPVCGSDGCQENHHK
FT                 FLHPGNPQAGNNQGNSAPASTSGVVTVHQHLHQRILFRILPVCLHANGKSV
FT                 NTFAFLDGGSDSTLLESSIARKLGVTGAVSPLCMQWTNGVRRTEEDSRRVQ
FT                 LEISGTSGKRFTISGVHTVSSLDLPHQTINFGELQGKFPYLKGLPVTSYED
FT                 AVPGILIGLDNTMLKTTLKLREGSGDQPVAAKTRLGWMLYGRSGESDPTLL
FT                 RRVLHLCNTPSNEDLHDLVKSFFTIEGAGVGSNELVESTSEKRAREIMEAT
FT                 TVRTESGKFQTGLLWRYDLVKFPDSKPMAERRLQCLEKRLSKDPALYEKVR
FT                 QQIADYLSKGYAHKATMQELMETDPSQTWYLPLGVVTNPKKPEKVRVVWDA
FT                 AATVKGVSLNSVLLKGPDLLQSLPMVLCRFRQREVAINADIKEMFHQVLIR
FT                 PEDRQAQRFLWRNNPSLPVEVFVMDVAIFGSTCSPSSAQFAKNRNAQEFSR
FT                 EFPKASTAVLENHYVDDYLDSVDTVDEAVDLATEVKSLHERAGFELRHWLS
FT                 NKTDVLEQIGEESSVTAKNFVMGKDSGAERVLGMIWLPTEDVFTFAIQFRE
FT                 DLKRLLDGNAFPTKRELLSLVMSIFDPLGLVANFVVHGKILVQEVWRSGIG
FT                 WDDRIPQELSASWHRWALALHSLAQVQIDRCYFPGYDAETLNSLELHVFVD
FT                 ASLNAYAAAAYFRVVQRDTVRCSLVSSKTKVAPLKQLSVPRLELQAAVLGT
FT                 RLMKTVVSSHTLPIGRKFLWSDSNTVLAWLRADQRRFHQFVAFRIGEILES
FT                 TDITDWRKVPSKWNVSDEATKWGSGPNASESSRWLRGPEFLYRDESEWPTQ
FT                 EEECSTNEEVRATVAVHRVNVSGTVQFERFSRWERLVRAVGYVWRFQSNCQ
FT                 KKKDQLPYPETVHLTSKELQLAEQTVLKLVQFEAFPQEYATLKSMQEEPSH
FT                 PPKQVEKTSPIYKMNPCIKDDGLIRKDGRIGAAAIVSEDAKFPVILPKEHY
FT                 VTGLIINEYHRRFAHANNETIVNELRQRFHIPKLRVAVKKVAGNCGYCKVR
FT                 RATPQPPRMGPLPEARLTPYIRAFTFTGLDYFGPVNVRIGRKNVKRWAALF
FT                 TCLTTRAVHLEVAFTLSTESCKLAVRRFIARRGAPLEIYSDQGLNFQGARK
FT                 ELQEAVRKMNQELASTFTNAATEWKLNPPYAPHMGGIWERLVRSVKKCFGR
FT                 HGDLQKPRRRDLLNRISRSCGLSKNALAAMETYRNPDEETFLTALAEAESI
FT                 VNTRPLTYLPLDSAESEALTPNHFLLHSSNGVCQPAVRPVDAKSALLANWG
FT                 HVQVMLDRFWTRWVKEYLPVITRQAKWFGETKPVRVGDLVIVVDEARRNSW
FT                 ERGVILKVHPGKDGRIRSADVRTKGGVLLRPVTKLAVLEVLDQPGMAEGRT
FT                 SSNTGRG"
XX
SQ   Sequence 6675 BP; 1795 A; 1601 C; 1760 G; 1519 T; 0 other;
     aaatctttaa gatttgtttg agatcgttat cggcgtggat tacataacca tgtctagtgg        60
     tgatcccgtt gccgattcac gcgagcagcg tgatgcagat cagcaaagtc aatgcattat       120
     ctgcaatcaa ccgaaccatg ccgatcgtaa aatggtccag tgtgatggat gcgatcactg       180
     gttccacttc agatgcgtcg gtgtgaacga cagcatcgaa gatccggaaa gaagcttcaa       240
     atgtgcggca tgtactgttc ccgatcctcc gggttcaacg gtatcgacat cagcgagtgt       300
     ccgtgaagcc cggatccagc tagaagtaca gcgactggcg gacgaaaaaa ggcttcagga       360
     aaagatgcac gcggaaaggg aaaagcagga gcgagatctg ctagagatga ctttgcgtct       420
     cgaacgagag cggagggaca aggcgatgaa ggaaaagttc gccctggaga aagattatct       480
     ccagaggaaa tatgacctcc tacatacgca gttggatgac gacggggacg cagttagtgt       540
     tcgtagccgt taccaaccaa gatcagaaag ggttgtggat tggattacca gtaatccggc       600
     tgtgaccatg agtgccaaca ctgggactat tcccactgga ctcacatcgc aactggaacc       660
     aatcacacac tctatgcagc aaacatcggc atcagcgatc actaatgcga atcgtgttca       720
     cccagctccc ggtttcatat ccaaagtacc accgaccgcg ccgagtacga ctacgagtga       780
     ttcgactccc ctgccatgct attcgaacgc atcgatcacg caggcagaaa tgcaaaaccc       840
     agttgcgagt gtgcaacaaa atttcccatc cacatcaatc gacaccagca atatgtttgt       900
     gatatcacca actattgtgt ctacggcatc gctctcgttg ccgccactgc ccacgttacc       960
     cgctagctct gtacccccct acaggcactc tttcgtaccg gcgtcgttct catctcaacc      1020
     accacaactg caagcaattc catctgtgcc atcatcatcg ttgtatcgga taggtacatc      1080
     acacactgct gtggcgtcgt gtttaccatc aggaggaatt ccatcagtgt ggcaacaatc      1140
     gacgtacgtt agtatgccac caccaaccca ccattcaaca ccaacgactg tggcttcgga      1200
     gagacgtcca gtaggagagc aacatctgta caatacacag ctagttcgtt ctcagggaga      1260
     tcagcacaac tctgcatcag tcccggtcag tcgaatcagt atgcgtccag gtcttggtga      1320
     gaatggtagc tctgtaggtc agtatgcaca acctacagca gtggtaagta atacctatgg      1380
     gttacatggc atgcaaagtt cgtaccaaaa ttatttacca aattattggt tcccgggagc      1440
     aaacaatgct ccattgcaaa tattgccaca gcaagaaaat atagcaagcg tagctaggcc      1500
     agcattacat ttggggggga acacaagtca gtcaggctct cagggtatac aaataaatca      1560
     aaacccagtc ctttcgtctc aatttgttcc tgggggtccc caaagggctt cactgcacgg      1620
     tgtggggtca aatgttccga tgtcacaaga gccgaatatt agtggttttc cttcggctcc      1680
     actggattac gcaccaaaca ctcagcagct cgcagctcgt catgtggtgt caagagagct      1740
     tccaattttt gatgggaatc ctgcggagtg gccaatgttc tggagtagct acactacttc      1800
     aacgcagatg tgtggttaca cgggagctga gaatcttctt cgtctgcagc gctgcttgaa      1860
     gggcgaagcg agaaaagcgg tgaatagttt cctgttgcac ccggcaaacg tggacgacat      1920
     tatgtcaacc ttgcgcacgc tgtatgggcg cccggaggct atcataaaca ccttgctaaa      1980
     cgatgtcaga agcactccaa cgcccaaacc ggaaaaattg gaaaccctgg tgaattttgg      2040
     attggtggtg cgcaaccttt gtgcacattt agtgtccgca ggccaagaga tgcacttggc      2100
     caacccgatc cttcttcagg agctggtgga taagctgccg gccaatgtga aactgggatg      2160
     ggctatgcac aaacagtcag tagcagtggc agatcttcga acgtttgctg agtatatgaa      2220
     tgtgatcatc aacgcagcga gcagtgtatc tagcggtatt accgaggtta caaaagcaga      2280
     gcggcagaag ggtaaagcct tcgtgaactc cgtccgtttg gagaacaaca gtaagagcaa      2340
     tcagcgaacg gagaaaagca gcagtagcgg aaaagagttc gtggaatcga aggcatctac      2400
     agctcccaag gtgcggccgt gtgcagtctg ccaagttcat ggccataagc cgaaggattg      2460
     ctctgttttc aagacgaaat ctctcggtga acgctggaaa gcagtacaag aagcacattt      2520
     gtgtaagcgc tgtttatatc ctcacggcaa gtggccgtgt aaggcacctg tttgtggttc      2580
     cgatggttgc caggagaatc atcacaagtt tctccaccct ggtaatcccc aagctggaaa      2640
     caaccaagga aattctgcac cagcttcgac ttctggtgta gttactgttc atcagcatct      2700
     gcatcagaga attctgtttc ggatcttgcc agtttgcctt cacgctaacg gcaaatcagt      2760
     gaatacgttc gcctttttgg atggaggctc tgactcaacg ctgttagaaa gttctatcgc      2820
     caggaaactt ggggtcaccg gagcagtctc acctctctgt atgcagtgga cgaatggtgt      2880
     tagacggaca gaagaagatt cgaggcgtgt acagctagag atttctggga ccagcggtaa      2940
     gcgtttcacg atttctggag tgcataccgt gtccagctta gatttgccgc atcagaccat      3000
     caatttcggt gagctgcaag gaaaatttcc gtatctgaag gggcttcctg tgacaagtta      3060
     tgaagacgct gtcccaggaa tattgattgg tttggacaat actatgctga aaaccaccct      3120
     gaaactgcgc gagggtagcg gagatcaacc agttgcggcg aaaacacgtc tgggctggat      3180
     gctatacgga agatctggag agtcagaccc cactctgttg cgacgagtat tgcacctgtg      3240
     caatacaccc tcaaatgaag atctgcacga cttagttaaa tcgtttttca ccatcgaagg      3300
     cgctggtgtt gggtcgaacg aacttgtcga atccactagt gaaaagcggg ctcgcgaaat      3360
     catggaagct accacagttc gcacggagtc cggaaaattt caaacaggtc tgttatggag      3420
     gtacgacctg gtaaagtttc cggacagcaa acctatggcg gagaggaggc ttcaatgcct      3480
     cgaaaagcgg ctttcgaaag atccagcctt gtatgagaaa gtgcgacagc aaattgctga      3540
     ttacctctcc aaaggctacg cccacaaagc gacgatgcag gagctaatgg agaccgaccc      3600
     aagccaaacc tggtatctgc cactgggggt cgtaaccaac ccgaaaaaac cggagaaagt      3660
     ccgagtggtg tgggatgcag ccgccactgt taaaggagtt tcgctcaatt ccgttctact      3720
     aaaaggacct gatctgctgc agtcactacc gatggtactt tgtcgctttc ggcagagaga      3780
     ggtggccatt aacgctgaca tcaaggagat gttccaccaa gttctcatta gaccggaaga      3840
     tcgacaggct cagcgatttc tgtggcgaaa taatccatca ctaccggtgg aggtgttcgt      3900
     gatggacgtc gccatatttg gatctacatg ttcaccaagt tctgcgcagt ttgcgaaaaa      3960
     tcgaaacgcc caagaatttt ccagggagtt tccgaaagcc tcaaccgcag ttctggaaaa      4020
     ccactacgtc gacgactacc tggatagcgt tgatacagtc gacgaagcgg tggatcttgc      4080
     aacggaagtg aagtcactac acgaacgcgc tgggtttgaa ctgcggcact ggttgtccaa      4140
     caaaactgat gtcttggaac agatcggcga agaatcctct gtcacagcga aaaacttcgt      4200
     gatggggaag gacagcggcg ctgaacgtgt gctggggatg atatggttgc caacggagga      4260
     cgtttttact ttcgcaatac agtttcgaga agatcttaag cgattgctcg acggaaatgc      4320
     gttccccacg aagagagagc tcctaagcct ggtcatgagc atctttgatc cgctcgggtt      4380
     ggtggcaaac ttcgtagttc acggcaaaat cctcgtacaa gaggtgtgga ggtctggtat      4440
     cggctgggat gaccgaatac ctcaggaatt gtccgcatca tggcatcgat gggccctagc      4500
     actgcacagt ttagctcaag tacaaatcga tcggtgttat ttcccaggtt acgacgcaga      4560
     gacgttgaac agtctggaat tgcacgtttt cgtggatgcc agcttgaatg cctacgctgc      4620
     ggcggcctac ttcagagttg tccagcgtga cacggtacgc tgcagtctcg tttcatcaaa      4680
     aacaaaggta gcgcctctga agcagctctc cgtacccagg ttggagttac aagccgccgt      4740
     ccttggaact aggttgatga aaacggttgt ttcaagtcac acccttccca tcggtaggaa      4800
     atttctatgg agcgattcga acaccgtgtt agcctggctc agagctgatc agcgaagatt      4860
     tcaccaattt gtggctttta ggatcggaga aatccttgag tccaccgaca ttaccgactg      4920
     gaggaaggtt ccatcaaaat ggaacgtatc agacgaggcc actaaatggg gcagtggtcc      4980
     gaatgcttcg gagagttcaa gatggcttcg tgggccggaa tttctctacc gagatgaatc      5040
     tgaatggcct acgcaggaag aagaatgtag tactaatgaa gaggtgcggg ccacagtggc      5100
     cgttcatcgt gtcaacgtca gtggaactgt acagtttgag cgattttcca gatgggaacg      5160
     gcttgtgcga gcagtcggat atgtgtggcg gttccagagt aactgccaaa agaagaagga      5220
     ccagttgccg tatccggaaa cagtacatct caccagcaaa gagttgcagt tggcagaaca      5280
     aactgtgttg aagctggttc agtttgaagc atttccacaa gagtatgcta cgttgaagtc      5340
     gatgcaagaa gaaccttcac atccgccgaa acaagttgag aaaaccagcc caatctacaa      5400
     gatgaatcct tgcataaaag acgatggact gattcgcaaa gatggccgaa ttggtgcagc      5460
     tgctatcgtt tcggaagacg caaagtttcc agtgatactt ccgaaggagc actacgtcac      5520
     cggactgatc atcaatgaat accatcggag atttgcgcac gctaacaacg agacgattgt      5580
     aaatgagctc agacaacggt ttcacatacc gaagctcaga gttgctgtaa agaaagtagc      5640
     gggaaactgc ggctactgta aggtgcgtag agcgactcct caaccacctc gcatgggccc      5700
     acttcctgaa gcgcgcttga ctccatacat cagggcattc acgttcaccg gtctagacta      5760
     ttttggaccc gtaaatgtgc ggattgggcg caaaaatgtg aaacgctggg cggcattatt      5820
     cacgtgcctc actactaggg cggtgcacct agaggtggcc tttactctga gtacggagtc      5880
     gtgtaaacta gctgtgcgac gattcatcgc ccgccgtggt gcgcctctgg agatatactc      5940
     cgatcaagga cttaacttcc aaggggcgcg gaaggagtta caggaagccg tccggaagat      6000
     gaaccaggag ctggcatcaa ccttcacaaa cgcagcgaca gagtggaagc tgaatccgcc      6060
     gtatgccccc catatgggcg gtatatggga aagactagtg cggtctgtca aaaaatgctt      6120
     tggccgccat ggagacctac agaaacccag acgaagagac cttcttaacc gcattagcag      6180
     aagctgaatc catcgtgaat acacgtccac tcacctacct accactggac tcagctgaga      6240
     gcgaagcact cacgcctaac cattttttgc tacatagctc gaatggtgtg tgccagccag      6300
     cagtaaggcc tgtagatgcc aagtcggcac ttcttgccaa ctggggtcac gtgcaagtga      6360
     tgttggaccg tttctggacc agatgggtta aagaatacct accggtcatc actcggcagg      6420
     ctaagtggtt cggagaaacg aaaccagtac gagttggaga tttggttatt gtggtggacg      6480
     aggcaagacg aaatagttgg gagcgtggcg ttatcctgaa agtgcatcct ggaaaggatg      6540
     gccgtatacg cagcgcagat gttaggacca aaggaggtgt gcttcttcgg ccggtaacca      6600
     aactggcggt cttggaagtg cttgatcaac ctggtatggc tgaaggcaga acttcaagca      6660
     atacggggcg gggta                                                       6675
//
ID   BEL-609_AA-LTR repbase;    DNA;    INV; 501 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   10-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-609_AA_;
KW   BEL-609_AA-LTR; Pao_Bel_Ele71; BEL-609_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-501
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [3]
RP   1-501
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: Elements are 99% identical to the consensus. Sequence
CC   updaed.
XX
SQ   Sequence 501 BP; 194 A; 87 C; 83 G; 137 T; 0 other;
     tgtgcgcaac ggtacaagac ccctcgttat cggctaccgc tatcggttca accgatccga        60
     cgatcgattg acaagtgcag cacaaaacgt catgggggat gattggggaa aaattgagat       120
     aacctattgt taaaaacgaa tagcagacat ctacacaaag actctctaag ctagattgaa       180
     tctcataaat ttattattct aaaattgttt attctaaagt tgctaaaata gaatttgttc       240
     ctaaaaataa gtaagtattg cttaatctat taaaattaat ttgattctaa ttgtaaaact       300
     taatctatga agggacatac acaacaacta cacatttgtt actagtagac ggacagttaa       360
     cgtagaagac aacaaatgta agtaaaataa attaaaacat gcgacatata actaaataaa       420
     actaaattac agcttaaagc ctactcaagc aaaagaacga gtttgctgtt aagagtccga       480
     aacgtgaccg tcttcgtaac a                                                 501
//
ID   BEL-60_AA-I repbase;    DNA;    INV; 5881 BP.
XX
AC   supercont1.98;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_AA_;
KW   BEL-60_AA-LTR; BEL-60_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5881
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.98; Positions 1792248 1798128.
XX
CC   Positions [4907-5467] - Integrase core
CC   'TTCTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..5881
FT                 /product="BEL-60_AA-I_1p"
FT                 /translation="MDDRVFRSVTTPRNCQSCERPDAAENEMVQCSICLLW
FT                 EHFGCAGVGSEVKHFSVRYVCQKCSDRQGTSGALQVPMEDKRKSKGSKASS
FT                 KGTAKRGKVIPDPPKSVSSSVRAKLLEEEFKLVEEERQLMEQELQEQEEIK
FT                 KRQLIEEERKLAEKRRLAEEESLFRDRKLQEELEMKRKQMQIRKESLEKRQ
FT                 AIIRHAASMSSRSGSIVDSEEKVNKWLNSQKNVGKVNEVLEDDDNNAKQFV
FT                 SPDPLDVPKGPELEYPDLGTLPFVPNPSHRLNQPEPIVRSDPGHLVSAYSP
FT                 HTLTQVQIAARQVLGKDLPTFGGNPEDWPIFISNFEQSTASCGYSDAENLV
FT                 RLQRSLKGNALEAVRSRLLLPASVPHVIQTLRTLYGRPEILIRSLMSKIQQ
FT                 VPAPKHERLETLIQFGLSVQNLVDHLKAAGQLNHLSNPALMQELVEKLPGT
FT                 MRLDWAFYKNKNLPATLETFGDFMSGLVTAASEVSFELPTLSNTSRMDKRS
FT                 RETGIVHAHTAEQMSMSTGESSSNSNAKVSKPCAACGRAGHRVAECYQFKN
FT                 ATVDERWQLVQQKGLCRTCLNSHGKWPCRSWNGCGIDGCRQKHNTLLHSSS
FT                 PLLENVGMSASHVSSENLKWPLFRIVPVVLFSDSSSQTIFAFIDEGSSYTL
FT                 LEESVATQLGVRGQLEPLTLQWTGKVKRKESNSRRIQVDISGKGCTPRHKL
FT                 IDARTVNRLVLPSQTLKYGDLAKQFPHLRGLPLEDYELVQPKLLIGLDNLR
FT                 LCVPLKLREGGPRDPIGAKCRLGWSIYGCIPGQSPQPAIVTFHVGTVSDPD
FT                 RELNEQLRDYFTLENAGVLGSREILECEDEKRARLLLESTTRRLPVGSGFE
FT                 TGLLWATNNPSFPDSYAMAVRRLEALERKLKDEPETERRVREQVVEYVRKG
FT                 YAHKASLVELTSVDAGRVWYLPLGVVRNPKKPGKIRLIWDAAAKVGNVSFN
FT                 SKLLKGPDLLSPLPKVLSQFRQFPVAVCGDIMEMFHQIKIRAPDNQSQRFL
FT                 FRDSPSEYPSVYVMDVATFGATCSPASAQYIKNLNAEECSKDYPRAAAAVK
FT                 NKHYVDDYLDSFETLQEAIAVVNEVKLVHSVGGFTLRNFSSNKSEVLDGIG
FT                 ASSKHEPKSLDLERGEKSESVLGMKWIPCEDVFVYTLGLREDLQYILTEDH
FT                 VPTKREIARVVMSLFDPLGFIAFFLVHGKILLQDVWATGTEWDQRIPNDIN
FT                 NRWQQWSHLFEQLHQLRVPRCYFRAPFASSLNGLQLHLFVDASEAAYSCVA
FT                 YFRLDTDNGTQVALVGAKTKVAPLKTLSIPRLELKAAVLGVRFLETIQNHH
FT                 EFTIHSRYCWSDSGTVLAWIHSHDHRRFHKFVAVRVGEILSSTEQKEWKWV
FT                 PTKLNVADLATKWGIGPQIAMESPWFQGPHFLHGPESSWPQQRQASSTNEE
FT                 LRPVSFHFVHSDPILDFFRFNNWTKLHRTMAYVLRFFDNIRQKKRGQKLEL
FT                 GALTSDELRRSEEILWKSAQVESYPYEVAILAKSQGPPELRHNVVDSSSDI
FT                 YTKWPYLDERGILRSRGRIGAAPYISVEAKYPVILPKNHVITLLIVDRYHR
FT                 NVRHANRETVVNEIRQRFEISTLRRLVDKVEKNCVWCRIAKAAPKPPSMAP
FT                 LPEMRLTAFVRPFTFTGLDYFGPVLVKVGRSNAKRWVALFTCLTTRAIHLE
FT                 VVHTLSTESCIMAVQRFVSRRGIPREFWTDNATCFQGISNELQIISEATKK
FT                 AMAEKFTSPQTTWKFIPPATPHMGGAWERLVRSVKVAIRAIIDGPRRPDDE
FT                 TLETVLLEAEAMINARPLTYVPLESADQEALTPNHFLLGNSSGAKFLPSGT
FT                 IDTRSTLRSSWKLARFMTDDFWNRWLKEYLPVITRRCKWFKDVKNIEVGDL
FT                 VFVVDGKMRNQWVRGRIEEVYPGRDGRVRQALVRTSTGVIRRAATKLAVLD
FT                 VLEKCKPWSLGDPERLDPQQGLRAGV"
XX
SQ   Sequence 5881 BP; 1599 A; 1384 C; 1501 G; 1397 T; 0 other;
     aactttaaga aatttgtggt agctagcaag gatggatgat cgcgttttcc ggtccgttac        60
     tacccctcgg aactgccaat cctgcgaacg acctgatgct gcagaaaacg agatggtgca       120
     gtgcagcatc tgtctgctat gggagcattt cggttgtgct ggagtaggaa gcgaagtgaa       180
     gcatttcagc gtaaggtatg tctgccaaaa gtgctccgac agacagggaa cgtcgggcgc       240
     gcttcaggtt ccaatggaag acaaacgcaa atcgaaaggc tcaaaggcaa gttccaaagg       300
     cacggcgaaa aggggaaagg ttattcccga tccgccaaag agtgttagtt ccagtgttcg       360
     cgccaagctt ttagaggagg aattcaagct agtggaagaa gaacgacaat tgatggagca       420
     agaacttcag gagcaggagg agatcaagaa gcgtcagttg atcgaagagg agcgcaagct       480
     ggcggaaaaa cgacgtctcg cagaggaaga gagcctcttc cgtgatcgga agctacaaga       540
     agagctggaa atgaagcgga agcaaatgca gattcgcaaa gaatctttgg agaagcgcca       600
     ggctattatt cggcatgcag cctcgatgag tagcaggagt ggctcgattg tcgactcgga       660
     agaaaaggtc aataagtggc tcaactcgca gaaaaatgtc ggcaaagtga atgaagttct       720
     tgaggatgac gacaacaacg ccaaacaatt cgtcagcccc gacccactgg atgtaccgaa       780
     gggcccagaa ttggaatacc ccgatcttgg cacgctgcca tttgttccaa atccgtcgca       840
     tcgtttgaat caaccggagc caatcgtgcg gagtgatcca ggtcatctag tgtctgcata       900
     ttcgcctcat acactcacgc aagtgcaaat agccgcgcgt caagtattgg gaaaagatct       960
     cccaactttc ggaggtaacc ctgaagactg gccgattttc atcagtaact tcgaacagtc      1020
     cacagcctcc tgtggatact ccgatgcgga aaatttggtt agactgcaac gatcgttgaa      1080
     aggaaacgcc ctggaggcag ttcgtagccg gcttctgtta ccagcaagtg ttccacacgt      1140
     tatacagact cttcgcactc tgtatggaag gccagaaatt ctcattcggt cgttgatgag      1200
     caaaatacag caggtaccag ctcctaaaca cgagcgactg gaaacactga ttcaatttgg      1260
     actctcagtg caaaatctgg ttgatcatct caaggcggca ggccagttga accacctttc      1320
     aaacccggcg ttgatgcaag agcttgtaga aaaactgccc gggaccatgc gattagattg      1380
     ggcattctat aaaaataaaa atctaccagc aactctcgaa acgttcggcg atttcatgtc      1440
     cggattagtg actgcagcaa gcgaagtatc attcgagctc ccgacactga gtaatacgtc      1500
     aagaatggat aagcgatcca gagaaactgg gatcgttcat gcacataccg ctgagcaaat      1560
     gtcaatgtcg actggtgaat catcgtccaa ttccaacgcg aaggttagca agccgtgcgc      1620
     agcatgtggc cgagctggac atcgagtagc ggaatgttac cagtttaaaa acgcgactgt      1680
     agatgaacgc tggcaactcg ttcagcagaa gggactatgt cgaacatgcc tgaatagtca      1740
     tggcaaatgg ccatgccgct cctggaatgg ctgcggaata gacggatgtc gacagaaaca      1800
     caatacgctg cttcattctt cctctccact gctagaaaat gtaggaatgt cggcaagtca      1860
     tgtgtcgtct gaaaatttga agtggccgct cttccgcatc gttcctgttg ttctcttcag      1920
     tgacagttcc tctcaaacaa tatttgcgtt catcgatgag ggttcttcgt atactctact      1980
     ggaagagtcc gtcgcaacgc agctgggagt caggggccag ctagaaccct taacccttca      2040
     atggaccgga aaggtgaaac gcaaagagtc aaattcaagg cgtatacagg ttgacatctc      2100
     cggtaaagga tgtacccccc ggcacaagct gattgatgca cgaacagtta atcggctcgt      2160
     cctaccctca caaacactca agtatgggga tttggccaaa caatttcctc acctacgtgg      2220
     tcttccccta gaagattacg aacttgttca acccaaatta ctgatagggt tagacaatct      2280
     tcggttgtgc gttccattga agcttcgcga aggagggcca agggatccta ttggcgcaaa      2340
     gtgtaggctg ggatggagca tttacggttg tatacctggt caatcgcccc aacccgccat      2400
     tgttaccttc catgtcggta cggtttccga ccctgatcgt gaactgaatg agcagcttcg      2460
     tgattacttc actctggaaa atgcaggcgt tttggggtca cgtgagattc ttgagtgtga      2520
     agatgaaaag cgagccagac tacttttgga aagtacgaca cgtcgtttgc ctgttggttc      2580
     tggttttgaa accgggttac tctgggcaac aaacaatccg agttttcccg acagctatgc      2640
     catggctgta cgtcgtctgg aagcgttgga gcgaaaactc aaagatgaac cggagacaga      2700
     gcgacgggta agagagcagg ttgttgagta cgtccgtaaa gggtatgccc acaaagctag      2760
     tctggtggaa ttaacatccg tggatgccgg tagggtgtgg tacctacctc taggtgtcgt      2820
     tagaaacccc aaaaagcctg ggaagatacg tctcatttgg gacgccgcgg cgaaagtggg      2880
     aaatgtctct tttaattcca agttactcaa gggacccgac ttgttgtcac ctcttccaaa      2940
     ggtcctcagc caatttcgtc agtttccggt cgccgtttgt ggcgacatca tggagatgtt      3000
     ccatcaaata aagatacgtg ctcccgataa tcagtcccaa cgcttcttat tccgcgacag      3060
     cccatcagaa tatccttcgg tgtacgtgat ggatgttgcc accttcggcg caacctgttc      3120
     tccggcctct gcacaatata taaaaaacct gaacgcggag gagtgttcca aggactatcc      3180
     acgggcggca gctgcagtta aaaataagca ttatgtggat gattatttgg atagctttga      3240
     gacactccaa gaagcaatcg cagtggtcaa cgaagtgaaa ctggtacact cagttggtgg      3300
     atttacgttg cggaacttct cttccaacaa atctgaagta ctagatggaa ttggagcgag      3360
     ttcaaaacat gaaccgaaga gcttggattt agagcgagga gagaagtcag aatcggtgct      3420
     cgggatgaag tggattccgt gcgaggacgt ttttgtctac accctaggtc tccgagaaga      3480
     tctgcaatat atactcaccg aagaccacgt tcccaccaaa cgagaaatcg ctagggtcgt      3540
     catgagcttg ttcgaccccc tcggattcat cgcattcttc cttgtgcacg gtaaaatttt      3600
     actgcaagat gtgtgggcga caggcacaga gtgggatcaa aggattccga acgatatcaa      3660
     taatcggtgg cagcaatggt ctcatctctt cgagcagttg catcagcttc gcgtacctcg      3720
     atgttatttc cgcgctccct ttgcttcaag tctcaatggt cttcaacttc acttgttcgt      3780
     agatgctagc gaggcggcat actcctgtgt agcctacttt cgcttggaca ccgataatgg      3840
     aactcaggta gcacttgttg gtgcaaagac caaagtggcg cctttgaaaa cactttcaat      3900
     ccctcgacta gagctgaaag cggctgtact aggcgtccgc ttcttggaga ctatccaaaa      3960
     ccatcacgag ttcacaatcc atagtcgtta ctgctggagc gattcgggga cagttcttgc      4020
     gtggattcat tcccatgatc atcggcggtt ccacaaattt gtcgcagtac gtgtcggcga      4080
     aatcttaagc tcaacggaac aaaaggagtg gaaatgggtg ccaacgaagc tcaacgtcgc      4140
     cgatttagct accaagtggg gcattggtcc tcaaatagct atggaaagcc cctggtttca      4200
     gggaccacat ttccttcacg gcccagaaag cagctggccg caacagcgac aggctagttc      4260
     aacaaatgaa gagctgcggc cggtttcctt ccactttgtt cattctgatc cgattctgga      4320
     cttttttcgg ttcaacaatt ggacaaaact gcatcgcaca atggcgtatg tattgcgatt      4380
     tttcgataat attcgtcaga aaaaacgagg tcaaaaacta gaactcggtg ctcttaccag      4440
     tgatgaactt cggcgttctg aagagatttt gtggaagtcc gctcaagttg aatcgtatcc      4500
     ctatgaagtt gctattctcg caaaatctca aggtccacct gaactccgcc acaacgttgt      4560
     agacagttcc agtgatatct acacaaaatg gccctatctt gatgaaagag gaatcttgcg      4620
     cagtcgtggc cgaataggag ccgcgccata catatctgta gaggcgaaat atcccgtaat      4680
     tcttcccaaa aaccatgtta ttacacttct gattgtggat aggtaccacc gcaacgttcg      4740
     tcacgccaac cgtgagacag tcgtgaacga gatccgtcaa cgcttcgaaa tctcgacgtt      4800
     gagacgatta gtagacaaag tcgagaagaa ttgcgtctgg tgtcgcattg caaaagccgc      4860
     tcccaaacca ccttcaatgg ctccacttcc tgaaatgcgt ctcacagcgt tcgtacgacc      4920
     gtttaccttt accgggctag actactttgg ccctgtactt gttaaagtag gccgcagcaa      4980
     cgccaaacgg tgggtggcac ttttcacctg cctcactacc agggcaatac acctagaagt      5040
     ggtacacact ttaagcacgg aatcatgtat catggctgtc caacgctttg tctctcgccg      5100
     aggcattcca agagaattct ggacagataa tgccacgtgc tttcagggaa taagcaacga      5160
     gctgcagata atatcggaag caacgaagaa ggctatggct gaaaaattca caagcccgca      5220
     gactacatgg aaatttatcc ctcctgcaac accacatatg ggcggtgcgt gggagaggct      5280
     cgttcggtca gtcaaggtgg cgatcagagc gataattgat ggaccacgca gacccgatga      5340
     tgaaacttta gaaacagtgt tactagaagc agaagccatg attaatgcca gacctctcac      5400
     ctacgtgccg ttagagtccg cagatcaaga ggctttaaca ccaaatcatt tcttgttggg      5460
     caattcctct ggtgcaaagt ttctcccttc gggaacaata gacacccgtt caacgcttcg      5520
     gagcagctgg aagttggcta gattcatgac cgatgatttc tggaacaggt ggttgaagga      5580
     atatcttcct gtcatcacac ggcgatgcaa atggttcaag gatgtgaaaa atatcgaagt      5640
     aggtgatttg gtattcgtgg tcgacggcaa gatgagaaat cagtgggttc gtggacggat      5700
     cgaggaagtc taccctggac gagatggtag agtacgacag gcgttggtgc gaacgtcgac      5760
     aggggtcatc cgaagagcag cgaccaaatt agctgttctt gatgtcttgg agaagtgtaa      5820
     accttggagc cttggagatc cagagcgcct agatcctcag caaggtttac gggcgggggt      5880
     g                                                                      5881
//
ID   BEL-60_AA-LTR repbase;    DNA;    INV; 529 BP.
XX
AC   supercont1.98;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_AA_;
KW   BEL-60_AA-I; BEL-60_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-529
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.98; Positions 1791719 1792247.
XX
SQ   Sequence 529 BP; 183 A; 106 C; 90 G; 150 T; 0 other;
     tgtgccgaca agacccctcg tttcggcaac gctaaacgtc acaccactac aacgaccaat        60
     gacagtacgg agatagagaa gaatgacgtt acgggagaaa tgtcaggcaa ctaggcttag       120
     agatatctaa agactgcatc gtcatctagc aatatttgca tatgaaattt aattcaacag       180
     tgaaattctt taattaaagt gtatttctga aatccattac gacaaattga atttagttgg       240
     tactaattac ctatttagac cgtaagtgaa cttgaatagt atgtaattca ataattataa       300
     tgcttctatg ttcgattaga gctgccacac agtaattcac gtcacgtaga ggatcagcga       360
     cccaaacttg ctaaaataac ataacggtca ccaaatttgt aagcctgcga tagttctatg       420
     aatatctctc atcagcaatt tattaataaa aatctatatt ttagcttaaa gctaacatca       480
     cactgaaacc ggagtttgct ctcaagagtt ggtgtaccct aaccccaca                   529
//
ID   BEL-60_CQ-I repbase;    DNA;    INV; 5970 BP.
XX
AC   AAWU01016932;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_CQ_;
KW   BEL-60_CQ-LTR; BEL-60_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5970
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 273-273 (2011).
XX
DR   GenBank; AAWU01016932; Positions   40001   45970.
XX
CC   Positions [5018-5578] - Integrase core
CC   'GATAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           947..5970
FT                 /product="BEL-60_CQ-I_1p"
FT                 /translation="MPTPRGNRSLPALSSISDRRGSPTPPPKPQDLSSGSR
FT                 LTSSQIAARHIVKDLPRFGGNPEDWPRFIAAYERTKKMCGFENDELLDRLE
FT                 RCLYDKAQLAVQNLLLHPNKVPLIIERLRTLYGNPEIIVETMVQRVRMMPR
FT                 PKADRMDTIIDFGIAVQNLCATMEACQMDECLYNVALLQELVEYLPPSIKV
FT                 NWALHRQGKLKVSLGDFGDWLGNLVEALSKVTRPQPAVKGHGVHRDRNNEH
FT                 VHVHSNTLDDQTVHETCLACGSDCQSLDKCAKFLKMSPKHRWEQIREKSIC
FT                 RKCLKRHFKPCDTKVPCGKNSCKFLHHELLHDNSKHKLPEELKATNVQSQE
FT                 ECNAHHCCLGSVLFKYAKVTIHGKGKSITTYAFLDSGSTCSLMEHSLWKEL
FT                 GLEGEQYPLCIGWTAGQGRYEAGSVKCAVDISSIHSGHRNRLKKLHTVESL
FT                 QLPAQTMNIDDLSQHYRHLSNLPIDSYENVRPRILLGMDNAFLDHPIEARE
FT                 GGENQPVAALTRLGWVVYGPCSVEENSKKNHHQEFNYHICQCDTMFAEMKQ
FT                 YFMLDSLGIQTPSKPLMSKDDERAMELLRSQTVREGNRYRTGLLWKFDEVK
FT                 LPDSRAMALNRLRCLEKRMIREPELATALQAKIEDYEQKGYIRKLTDEEER
FT                 AHRDRVWYLPIFVVTNPNKPGKLRIVWDAAATVRGASLNSFLLKGPDQLAP
FT                 MVNVLYRFREYRTAVTGDIREMFHQVGVHPEDQHCQRFLWNNGRPGSTPSI
FT                 YVMQVMTFGATCSPSCAQFVKNTNAERFNEDHPAAVNAIINDHYVDDMLSS
FT                 VETEQEAIELATSVRDIHAQGGFEIRGWRSNSSSVLEALSAEQLNEKNLNV
FT                 IAQFSTEKVLGMWWDSCTDTFTFKLPTKPDKELLNGSRVPTKKEVVSVLMS
FT                 IFDPLGLLANVLMFLKVLIQEIWRSKVGWEDPITATQFEKWLTWLKVIEQV
FT                 ENVTVPRCYRQITSSSSKTNVQLHMFVDAGVQGCATVGYLRFEEADRIECA
FT                 FVAGKTKVAPNKLTSIPRLEIDAGTMGVRLAQKIMEALRIVIHQRFFWTDA
FT                 RDVLCWLHSDHRQYTQFVGFRVAEILEKSDLSEWNYCPSKLNPADDGTKWT
FT                 KTPDLSKKSRWMHALCFIQEKTSNWPEKLTHIGTTQLELKHSVGLHCATAQ
FT                 VIRWENFSTWKRLLRHTALCKRFVRNSKASTDKQLRTTGEITQEELQAAEA
FT                 YLHRQAQEAEYLEEIAILTKAANCDEPDRYHIPKSSSLFKLSPHLDERGVL
FT                 RMSGRAGACEFIEPEVSCPVILPRNHHITVLTVRSMHFRYHHTSNETVVNE
FT                 LRQRYRIPHLRRVCSQVRWSCQDCKNRSARPAAPLMADLPQARLAGFSRPF
FT                 SYTGVDYFGPMCVAVGRRVEKRWGVLLTCLVTRAVHIEIAHSLNTDSCIMA
FT                 IRNFAALRGTPLELFSDQGTNFIGSDRELREALQKIDNDKLFKEFTTPNTK
FT                 WTFNPPSSPHMGGSWERMVQSVKKILTQLKLPRNPTDEVLRNTLLEIANVI
FT                 NSRPLTYIPIDDENSPALTPNHFLLGSSSGSKPLVPFSDDIATLRNNWKAS
FT                 QLYANIFWKRWVKEYLPTICRRTKWHQPVRPIQVGDVVVVVDPDLPRNCWP
FT                 IGRVVSTNTNNKDGQVRSAVVRSNGRYYERPVVKLAVLDVGINTSKLDNDS
FT                 SVLGGT"
XX
SQ   Sequence 5970 BP; 1658 A; 1578 C; 1528 G; 1206 T; 0 other;
     ttttaaattt tccgtttaac taaaccggaa tgtctgacaa aggcgggccg gagaaacccg        60
     gcgcgatatg tggcaaatgc gacaaaatgg gttggaagcg gatggtgaaa tgcgcgaaat       120
     gcagactctg gtatcactat gaatgcgtgc gtgtgacttc tggagtgctc gacgccccct       180
     gggtttgcaa tgactgcctt agaagatcta tcgaggaaag caatgaagtc cttgaactgc       240
     atctgcgtga ggaacggcgg aaggtgtatc gcagcctaca gcagaaacta gaaaagcagt       300
     ggcgtgaaca aaaccctgga actgatcaca cgcagtctga gaacgttgag tacgttaagt       360
     ttgggaatac cgtcatccaa attgagcgac gtggtggaat tcctctggct acatccagtc       420
     cttctgccgg tgcggaacca gcaatgaaac ccggtcagtc cggaacactt cagcgcctcc       480
     gtgaactgga agaagcaaac aggaagctac gtagacagat agaattggcc caacaatcgg       540
     aaacatcaag aggattcact tcccacacgg aaccggcgga atcactgtac gaatatccgc       600
     tgcccagctc aagactagaa cgtatccttg acccaacaaa gatcaatcca accggatttc       660
     tgagtcctgt cgttgagaga acagaatctt cccaccacgg gatctgaagc tgaaagcgct       720
     agcggaaagg caggcgctag agaagaagca gcttgaagaa agacaagcac tggagcaaga       780
     acttctcgac caacaagacc ttgacgaaga cttgcgatct gtacgaacac gcagcagtga       840
     tcaccactcg tccggatcaa acttcttgaa tgtcagcaaa tggctagatg aactgcaaat       900
     ctctctcaac cctgtgccag ccgcgagcga aaccccctcc ggaagcatgc caactccccg       960
     cggaaacaga tctttgcccg cgctgtcttc tattagtgac cggcgaggtt cacctacacc      1020
     tcctccaaag cctcaagatc tatcgagcgg ctcgcgattg accagcagtc aaatagctgc      1080
     ccgccatatt gtgaaggact tgccaaggtt tggcggaaac ccggaagact ggccacggtt      1140
     catagccgcg tacgaacgaa caaagaagat gtgtggattc gagaatgatg aactcctgga      1200
     tcgactggaa cgttgcctgt acgataaagc acaacttgcg gtccagaacc tattgctaca      1260
     tcccaacaag gttccgttga tcattgagcg cttgaggacc ctttacggga atccagagat      1320
     cattgtggag acgatggtac agcgagtccg aatgatgccc cgaccaaaag cggaccgaat      1380
     ggacacgata atcgatttcg gaattgcagt acaaaacctt tgtgctacca tggaggcttg      1440
     tcagatggat gagtgcttat acaacgtggc tctgctacaa gagctcgtcg agtacctgcc      1500
     gccgtccatt aaggttaact gggcgctgca ccggcagggc aagttaaagg tgtctctggg      1560
     cgacttcgga gactggcttg gtaacctggt cgaagctcta agtaaggtga caagaccgca      1620
     acctgcggta aaaggccacg gtgtccaccg ggatcgtaac aatgagcacg tccatgttca      1680
     ctccaatacc ctggacgacc aaacagttca cgaaacctgc ctcgcatgcg gaagcgactg      1740
     tcaatcgctg gacaaatgtg ccaaattcct aaaaatgtca cccaaacatc gatgggaaca      1800
     aattagggaa aaaagcattt gtcgcaagtg cctaaaaaga cattttaaac catgcgacac      1860
     gaaagttccg tgtggtaaga atagctgcaa attcctgcac catgaacttc tccatgacaa      1920
     cagcaagcac aagttacctg aggaactgaa agcaacgaac gttcagtcgc aggaggagtg      1980
     taatgcgcat cactgctgcc tcggatctgt tctattcaag tacgcaaagg tcaccatcca      2040
     cggcaaggga aagtccatca ccacctacgc attcctcgac agcggctcga cttgctcact      2100
     gatggaacac agcctctgga aagaacttgg acttgaagga gagcagtacc cactatgcat      2160
     tggatggaca gcaggacaag gtcgatacga ggccggctcg gtcaagtgcg cggtggacat      2220
     ctcgagtatc cacagtggac atcgaaaccg attaaagaaa cttcacacgg tcgaaagcct      2280
     acagctgccg gcgcagacga tgaacattga cgatctctcg caacactacc ggcatctttc      2340
     gaacctgccg atcgactcct acgaaaacgt tcgccccaga atcctcttgg ggatggacaa      2400
     tgcgttccta gaccacccaa tcgaagcacg agaaggaggg gagaaccaac cggtcgctgc      2460
     gcttacccgt ctaggatggg tcgtttacgg gccttgctcg gttgaagaaa actccaagaa      2520
     aaaccatcac caagaattca actaccacat atgccaatgt gacacgatgt ttgctgagat      2580
     gaagcagtac tttatgctgg acagtcttgg aatccaaacg cccagcaaac cgctgatgtc      2640
     caaggacgac gaacgggcga tggagctgct gagatcgcag acagttcgag aaggaaaccg      2700
     gtaccgaacc ggtcttttgt ggaagttcga tgaagtgaag ctacccgact cgcgagctat      2760
     ggcgctgaac cgactgcgct gcctagagaa gcgcatgatt cgagagccgg aacttgctac      2820
     ggcgctgcag gctaaaatcg aagactacga gcagaagggt tatataagga agctaaccga      2880
     tgaagaggag cgagcacatc gtgatcgcgt gtggtatttg ccaatatttg tggtaacaaa      2940
     cccaaacaag ccgggaaaac tacgcatcgt atgggacgcg gctgcaaccg tccgtggcgc      3000
     atcgcttaac tcttttctgc tgaaaggccc tgaccagctt gcgccgatgg tcaatgtcct      3060
     gtaccgcttt cgggagtacc gcactgctgt gacaggtgac atccgtgaga tgttccacca      3120
     agttggtgta caccctgaag accagcattg ccagcgattc ctgtggaaca acgggcgccc      3180
     cggatcaacc ccttcgatct acgttatgca ggtgatgacg ttcggcgcga cctgctcccc      3240
     aagctgcgca caatttgtca aaaacaccaa tgccgagcgc ttcaacgagg accatccggc      3300
     agcggtaaac gcaatcatca atgaccacta cgtggatgat atgctaagca gcgttgaaac      3360
     ggagcaagag gcaatcgagc tggcgactag cgtccgagat atccacgcgc agggaggatt      3420
     cgaaatacga ggttggagat caaattcgtc ttcagttctc gaagcactca gtgcggagca      3480
     gttgaacgag aagaatttaa acgtcatcgc gcagttttca accgaaaagg tgttgggaat      3540
     gtggtgggac tcctgcaccg atacatttac gttcaaactg ccgaccaagc ccgacaagga      3600
     actgttgaac gggtctcgtg taccgaccaa gaaagaggtt gtcagcgtgc tgatgagcat      3660
     cttcgatcct cttgggcttc tggccaacgt gctgatgttc ctgaaagttc tcattcaaga      3720
     gatttggcgc tcaaaggtcg ggtgggaaga tccgataaca gcgacacagt tcgaaaagtg      3780
     gcttacatgg ctgaaagtca tcgaacaggt agaaaacgta acggtgccga gatgttaccg      3840
     ccaaataact tcgagctcgt cgaaaaccaa tgtgcagctg cacatgttcg tagacgctgg      3900
     cgtgcaaggt tgcgcgacgg tcggttacct gcggttcgaa gaggctgatc gcatcgaatg      3960
     tgcatttgtc gctggaaaga ctaaagttgc cccaaacaag ctaacgtcga taccacgact      4020
     tgaaatagac gctggaacca tgggagtgcg cctcgcacag aagataatgg aagcccttcg      4080
     catcgtgata caccaacggt tcttttggac cgatgctcga gatgtcctgt gctggctgca      4140
     ttccgaccat cgccagtaca cccaattcgt cggtttccgt gttgccgaaa tactggaaaa      4200
     gtcggacctg tccgaatgga actattgccc cagtaagctt aatccagcag acgatggaac      4260
     caagtggacc aaaacaccag atctgtcgaa aaagagccgc tggatgcacg cattatgctt      4320
     cattcaagaa aagacatcaa actggccaga gaagcttact cacatcggaa cgacacagtt      4380
     agaacttaag cactcggtgg gactgcactg tgcgacagct caagtcatca gatgggagaa      4440
     tttctcaacc tggaaacggc tacttcgaca caccgctttg tgcaagcgct tcgttcggaa      4500
     ctctaaagct tcaacggaca aacaattacg cacaactggc gaaatcaccc aagaagaact      4560
     gcaagcagcg gaagcatacc tgcatcgaca agctcaggag gcagagtacc tggaagagat      4620
     agccattctc accaaagcag caaactgtga tgaaccagac aggtaccaca tccctaaaag      4680
     cagctcgctc ttcaagttat cgccgcacct ggacgaacgt ggcgtgctgc gtatgtctgg      4740
     tagagcgggt gcttgcgagt ttatcgaacc agaagtcagc tgcccagtca tcctcccacg      4800
     aaaccatcat ataactgtgc tcaccgtacg gtcgatgcac tttcgctatc atcacaccag      4860
     caacgaaacc gtcgtaaacg agctccgaca gcgatacaga attccacatt tgcgccgggt      4920
     ctgttcccag gtccgatggt cctgccagga ttgcaaaaac cgcagtgccc gccctgctgc      4980
     tccgctcatg gccgatctac cacaggcaag gcttgccggt ttctcgagac cgttctcata      5040
     caccggggtg gactactttg gtcccatgtg cgtcgccgtg ggtcgccgcg tagagaagcg      5100
     ctggggcgtg ctcttgacct gcctggtaac gcgagcagta catattgaga tcgcgcactc      5160
     tctaaacacc gactcttgta taatggccat ccgcaacttc gctgcactgc gcggaacgcc      5220
     tctcgagctg tttagtgatc aaggcactaa cttcatcgga tcagaccgcg agctaagaga      5280
     ggcgctccag aaaatcgaca acgacaagct gttcaaggag ttcacaacac ccaatacgaa      5340
     gtggacattt aacccaccca gctccccaca catgggtgga agctgggaga gaatggtgca      5400
     atccgtcaag aaaatactga cccaactcaa gctaccccgc aacccgaccg atgaagtact      5460
     tcgcaacacg ctccttgaga tcgctaacgt catcaattcg cgacccctaa catacatccc      5520
     tattgatgac gagaactctc ccgcactgac tccaaaccat tttctgctcg gctcctcaag      5580
     cggcagtaaa ccgctggtgc cattcagcga cgacatcgct acgctcagaa acaactggaa      5640
     ggcctctcaa ttgtacgcaa acattttctg gaaaagatgg gtgaaggagt atcttccaac      5700
     aatctgtcgc cgaacgaaat ggcatcaacc tgtgcggccg atacaagtcg gcgatgtcgt      5760
     cgtcgtagtt gacccggacc tgcctcgcaa ctgctggcca atagggcgag tggtatcaac      5820
     gaacacaaac aacaaggacg ggcaagttcg cagcgctgtt gttaggtcta atggccggta      5880
     ctacgaaaga ccagtggtga agctcgcggt tctagacgtc ggtatcaata ctagtaagct      5940
     ggacaacgat tccagcgtac tcggggggac                                       5970
//
ID   BEL-60_CQ-LTR repbase;    DNA;    INV; 852 BP.
XX
AC   AAWU01016932;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_CQ_;
KW   BEL-60_CQ-I; BEL-60_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-852
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 274-274 (2011).
XX
DR   GenBank; AAWU01016932; Positions   39149   40000.
XX
SQ   Sequence 852 BP; 256 A; 194 C; 171 G; 231 T; 0 other;
     tgttacgtca tctggcgacg tagcctccgt tacaaaccgc cgaactcttc gcccgaggtt        60
     ccagaaaaat acgacgcagc tctaaagtgt tcggccacac ccagtaccac cggagggatc       120
     gttatcaaac gcatcggcaa tagcgaaaga agagaaatag taggaataag aagtgatctt       180
     gaacttgaaa tgagtaggcc tttgtaatag cttctattgt atctccaaag tactacaccg       240
     aggacgcgct gttaaaagct ggactaagat cgtagaatat tgtgcatgcc agtgacctaa       300
     atttacgatc gcaggtgaaa aaagcatact atatgttgta cacgctgcgg tacttatatt       360
     tttgaccccc attctagccc tactgcgcgt tgtaccccag aacaaattgt gcgccacgct       420
     aatatgatcc ccgtagatcg agcgcaataa ttaggtaacg attaggctag atttgttgat       480
     ttttgcgccc tcacacttat actatcgtcc tcgtagaaat tgaattcccc tcgtgcgagg       540
     catcccagcc gatgaacggc ttagaaaagt ataaatatta aggtaatttc tctaaattca       600
     atccctaaac aagagctaca tgcaaatcta ttgttctaac agtaagccac aacctcgctg       660
     ttggacctac cgtcagtgca tgcattccgg ccgttgaacg gttataaagg gcataaacgt       720
     aagttcgttc aaacttttcc ctaatgcttg attgatcaac tgaatttgta tttgtaggga       780
     aaatttaatc acctcagaat aaacggattc aaatttgtgg aaaactctgt tacttgacca       840
     cttctcgtaa ca                                                           852
//
ID   BEL-60_DTa-I repbase;    DNA;    INV; 4500 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   06-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4500
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 3'-end is uncertain.
XX
SQ   Sequence 4500 BP; 1328 A; 963 C; 985 G; 1224 T; 0 other;
     ttttggcgcc cgaacaggga cctattggat aaggttcaat cccggaggag ttcgtcgttg        60
     gagctcaatt taattgaaat taactactgg ccggcgactg cggcagcatc gaatttattg       120
     gaaagccggc tactgcgtca taattgtgac ggcgactgca gcagcattga ccatattgga       180
     aagtgagtcc gaactgggtt gataaattta atatttcttg cagacatgtt tttggtttga       240
     tgtgtgaata ttaactctaa tagcgtggta aatcggtctt tatggtgtga ggttagaact       300
     gatcgctgag taggttatat aattcacgaa cacgtgctcg acgttaactt gttaatgaat       360
     aatataataa tatttatgaa taatataaga acactgccaa actaagcaac aaggaaattt       420
     aaggaagcaa tttaaccttt aatataaata aattgaaatt ttactgggtt taagcctgta       480
     ttaaaaacat ggtaaattcg ttccctaaaa tatggctcct aaaaaatcga aggagcatga       540
     agcttttaca gctcgaactg gcctagtgaa ttcctttacg cgcaataaag attacattac       600
     agcaaacaat gctaccatga cgcctgcaga acttgaagcg cggttgagcc tggtggagtc       660
     gaattacagc caacattcaa gccaggatcg agcaggagat ggacgacgca agcggaatta       720
     attgtcgcta cacagtagag gaactttatt gcgaaattaa ggctcaagta ttaagcagtc       780
     tgaagaattt tagcggtact gatgttttga atagtacaca ggtagctcgt ccgcagcggt       840
     cggtcccgct tccgtcttaa aaggttcctg aattttccgg aaaattcacc gagtggacaa       900
     gttggttcaa tacgtttaga acgctgatag cctctgacag tgagctggat gagctatcaa       960
     aaatgattca tttgagatct gctctaggtc ccgtgccgtt aagtacaatt gattgcttta      1020
     atatatcagg agctaattat attcgtgctc ttcgcttgct acaagatcgc tatgaaaata      1080
     aagcaatcat tgttcagtcc cacgttctag agctttttaa tttaaagcgt gtcaagcata      1140
     cccactcaga ggctttagaa attttattag acagtgtaaa ttcgcaaata gtttccttac      1200
     gatcgctagc taaagagcaa gagattttag acgcggttat atttcatttg tttcgcagca      1260
     agctagacga ggagactgta gagaagtgga aaagcgaatg ggattgtact gaactccctt      1320
     cctggtcaac gctttctcta gaggtataaa tttggcaagt cgtgaggctc ggcagacaaa      1380
     aagctccaaa cccaatatta aaagcgatgc ccaaaaattc aagcttagct acttcagtat      1440
     atagcaatga aaaaagctgc tgttttatgt gcggaggtgg acattccatt aaatcttgtc      1500
     taaaatttaa agagctatcg ccgatgcaac ggtatcataa ggtcaagaag ctgtctctct      1560
     gcctagtctg ttttagcaaa cgccactcta ccagagcctg taggagccaa tactgtagtg      1620
     cgtgtaataa gcctcatcat aatttgcatc atcgggagac ttcagccagc actaacagtt      1680
     ccatcccaac cacactggat caacaacctc acaactcttt atatagttcg ctgtttacga      1740
     agtcctcctt cagttttcta gcaactgccg ttgtccttat taaaggcagc gacggaactt      1800
     atcaaaactg taggtgtgtt ttagattctg gaagccagtt gaattttttg acgagtgaat      1860
     tagtggcaaa attgaagttg agtcaagtac cagacttcgc ggaataggta actcaacttc      1920
     tcagaccagg ggatcggtaa ccgccacatt caagtctaaa gcgacgaggt ttgcggccac      1980
     tgaaagcttt tgtgttttgc cagaaatcac acagtatcag ccttcgatag caacacatga      2040
     agtgatgtta cagaccccaa aaggcgtaac actggcagac cccatattcg attcgggaga      2100
     aagaattgat atgctcctgg gggtgtcatc cttctttaac ctgattgtcg caggccaaat      2160
     caagctggga ccaaaaatgc ccactctaca aaaatcactc ttaggatggg aagtcgtagg      2220
     tgaactatcc gattccccga gcgtctcctt attagtaggt gaaacagagg agaaagttca      2280
     agcagcaaac gacctacacg agctagtcca aaagttttgg aagtgtgaag aattggctcc      2340
     gccagccgat aaacttactc aagaggagaa ggattgcgag actcattttg tcgatcatat      2400
     tagtcgttct acttccggac ggcttgtggt ggctgtccca ttcaaaagtc agacaacgcc      2460
     gttaggagat acatactcaa tagcattaaa taggtttcta aacttaaaga ggaaactaaa      2520
     ccgcaatccg gatctaaaaa ggcagtagac agaattcatc gatgaataga aggaattagg      2580
     ccacatagaa gtcctagatt cgagtcagtc gaataacgta aagtatttca tttctcatca      2640
     tcccgtctta aggccggata gccttacgac caagtttcgc gtcgtatttg atgctagttg      2700
     caagtccagc aaaggagtgt cgctaaataa caccattctc gtgggacctg acctttttga      2760
     gatattaatt cgattccgat tttataagta cgctctaacc gcggacattg ccaaaatgta      2820
     tatgcaaatt ttagtaacag atccccattg taattttcaa tgcatactgt gacgtttgaa      2880
     taatgaggtg caaacgctgc gtttaaaaac cgtgatctac ggaacaagtt ccgctccatt      2940
     cctagccgtg cgatgcctgt tttatttggc tgaaaacttc ggtgagccct atccatttgc      3000
     agttgaggca attaggaaaa gctttaatat ggatgatatg ctgtgcggag cggatactcc      3060
     atccgagttg tccaaattaa aacaagaaat ttctgatctt ctaaatatcg gtcgattcgt      3120
     cttacacaaa tggcgtagca gctatccaac ggagcacagt gaagccgctc cagaagaacc      3180
     ccttaggctc aagactgaag atgcagcaaa ggcgctcggc atttgttggt caagccaaag      3240
     cgaccaattt caattctctt tcaaggcgga gtataatccc agaattacca agcgaatagt      3300
     actctcagaa ttatctcaag tgtttgatcc agtggctgat ctgaccactc tagagctgta      3360
     tgggttctcc gacgcttcaa gccgcgctta tggcggagtc atctatgctc gcgttcagga      3420
     ccatgacgga tcagtctatg tacatttggt agccgccaaa tccaaagtgg cgccagtgaa      3480
     ggtaacatct ctaccccgac tagaactgca aggtgcattg cttatgactt cgttaatggc      3540
     caaggttaga tcaagtattc acttaaaggt tacaaaaatt aggtatttta ctgacttgac      3600
     cattgtgctc aactggctcg cgtcgcatgc aagccgctgg acaacatttg tcgcaaatag      3660
     agtagcgctt atacaggagc tttcagacat ccaggattgg tgcaaaaaag agtctataat      3720
     caatccagcg gatattgttt ccagaggact gtactccgca gaccttaaca aatcaaggct      3780
     gatttaccac aagaaacaat acatccgatt ttattaccac ataatcattt ggcagttgaa      3840
     gccctaattg aatacacaca tcggataaat ttacatgccg gagtgcaatc cttatgcgct      3900
     tttttgcggc agaagtattg gattatcagt tgcaggaagg tagctcgcag ggctgtcaaa      3960
     agatgcgtcg tctgcttccg gcagcgccca gtcctaggcc aacatctaat gggtgcgctt      4020
     ccaaaaagca ggaccaatac aaatgcactt caatatccga ggaaaacgtc ccgtcaaggt      4080
     ctatctctgt atatttgtgt gcttcttaac gatcgtatct gacttaagcg cgaacgcgtt      4140
     catcgctgcc ttaaagccct tcttcgctcg acgtggcctc agtacggatc tgttttgtga      4200
     caacgataca aattttgtag gcgcctcacg gaagatggcc aaaacatttg atcttgcaag      4260
     tcagagctta atcggagaca ccttcagtca gtgcgaagtc aacttcatac caccccgctc      4320
     tccttgtatc ccttgtcatc agatcctaat tatctggaga cattgacacc gggtcatttt      4380
     ttggtaggac gaccactgaa tgctcaactg gaacccttcg acgaggattt gatcaaattg      4440
     tccatgacaa gccactggaa tcgtatacta gcagttcaaa acatgttctg gaagcgttgg      4500
//
ID   BEL-60_DTa-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-60_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-273
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5676-5676 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identity to consensus.
XX
SQ   Sequence 273 BP; 78 A; 43 C; 54 G; 98 T; 0 other;
     tgttcgcgcc gcttattgaa attaattctg tgaaatttat tgaatttagt attttgtata        60
     ttccttgaat ttaaatgata acactatcga tatactagca atgttaacta tcgctgttat       120
     gaaaacgcta tcgacaaacg ccaagtgggt tttgtcatca ctactgttcg agtaaagact       180
     ttaagctgag ctgatgtgca ttttttcttc tggagaaaag gagatcttgg atcctttata       240
     ttaaggctag ctgaaggact ttgggctcga tca                                    273
//
ID   BEL-610_AA-I repbase;    DNA;    INV; 6780 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-610_AA_;
KW   BEL-610_AA-LTR; Pao_Bel_Ele203; BEL-610_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6780
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5813-6373] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           443..1654
FT                 /product="BEL-610_AA-I_1p"
FT                 /translation="MHSVQEEDEHRSFRSRVSSKQIRDSTREWVGASKPTD
FT                 VVNAQIATTSTHLCSSQLGGTQQNADVASIDQIASTATNTEQAKEVIRTPP
FT                 TGAQQGRAPITSTSAIGAFSEQQTTQIIEHQGEASPAIIGPRADMPVETVP
FT                 SSHRHTGVPKTNAFVQQKTAESLMRANMETPSLADGARIENPITAGLSTES
FT                 QVRTSVSTLHVRLQPIAEVTSTPLIPSIKRSVDSQSGYKAHHKIIAQPSNQ
FT                 LGVVQGQLTRNPNTVPGAESGEPPPGLNVTGQIPLSKFAQLGKSKKAVLQP
FT                 PLERKRLNDPNPSAIIPGQCNESTLLSLPPTGYQHFSASNRQELPPTSGRE
FT                 QYTVTSAKHQSVIQPPPGYENFGEETDCSIWDSAVVISPSAWNKQSPAIIA
FT                 TSTRIRLSGV"
FT   CDS           join(2108..3412,3416..6778)
FT                 /product="BEL-610_AA-I_2p"
FT                 /translation="MREIPSPRGDDLKTPIKFGMGVENLVEHMILAQQFQH
FT                 ISNPMLLQEMVDRLPPNLKLQWASYKRNYNPVNMATFNGFMKDLVTMASDV
FT                 TLLTSVGQLPAEKHDRGRREKSSKEKLFVHQQSPASTDMSGAESSGSIPKP
FT                 CVNCSKTDHRIAECPVFKRLTVDERWKVLRQKGLCRICLVPHRSWPCRSKQ
FT                 ECGVGDCRMRHHALLHLRKAASGVPSSTTAAERNVVHQNHHSVTSCALLRY
FT                 LPVTLHYNGKSVEIFAFLDDGSSSTMMDAEVAEQLGAVGLAEPLYLGWTGD
FT                 ISRTEKDSQHIRVAISGFNMAKEFPLKARTVGQLKLPSQTVNYEELCLDHP
FT                 YLRKLPLSSYTNAAPRLIIGVDNAKLISALKSRESRTGQLVAVRTRLGWCL
FT                 YGRHATTDSSLVDYVNTHMELHEADTDLHNLFRQFMAVDEAVKRSPLSNED
FT                 KRASDILQKTTRRVDGRLETGLLWRSDEPSLPDSYDMAVRRMEALERKLSK
FT                 DDQLREKVRGLIEEYLASGYAHRITTAELDTTEPGRVWYLPLGVVRNPRKP
FT                 EKVRLIWDAAARAKGISFNDMVLKGPDLLTALPVVLLRFRQKSVAFSGDIK
FT                 EMFHQFRIRKEDRQAQRFLYRENPGKPPQIFVMDVATFGAACSPCIAQYLK
FT                 NKNAEDYKEQYPEAARAIIENHYVDDFLDSVDTVDEAVELIEDVKHVHAQA
FT                 GMEIRNFASNSSEVLERIGEASRTQQKSINLEANVERVLGMVWNPSEDTFT
FT                 FELDLKEEVQNIVANKIAPTKRQVLRTVMSLFDPLGLVAHFVVHGKLIMQR
FT                 IWREGLDWDEQISGEILEDWCKWSRLLTKLNEVTVPRCFFSGNGRAHNDAQ
FT                 IHMFVDASENAYACVAYLRSYGNGAPQCTLIAAKTKVAPLKPLSIPRLELQ
FT                 AALIGSRLLETICKALTIPITTRYLWTDSTTVLAWLRSETRRYHQFVGFRV
FT                 GEILTTTTIDEWRKVQTKLNVADQATKWKDGPSFDPEDWWYSGPRFLSDPA
FT                 ERWITDLTLHSSEELATTVDLRSSFMHHRSLHQQPFIAVDRFSSWQRLLRA
FT                 TAYVIRAAKLFLGLRATGPLIQEELANAEILLWRQVQMQVYPDEYVTLVYN
FT                 KEHPKEEPRRLEKTSPLYKMSPILDDNGVLRMNSRITRAPIVSRDLKYPVF
FT                 LPKEHRVTALLVESYHKRFLHRNNETVLNEMRQRFFIPQLRSVVSKIAKQC
FT                 QHCRVWKATPQVPMMAPLPTIRLTPFIRPFTHTGVDYFGPIFVKQGRSMVK
FT                 RWIALFTCLSIRAVHLEVVHSLSTQSCVLAIRRFVARRGSPATFCSDNGTN
FT                 FVGASNILKEQIRTIGKSCAATFTNTDTKWLFNPPLAPHMGGPWERMVRSV
FT                 KVAMSAIADHPRHPSDEVLETIVLEAEAIVNSRPLTYVPLEHENQEALSPN
FT                 HFLLYGTQGINQPCQELTEEHVLLRDSWKLAKYLVDTFWTRWVREYLPTLT
FT                 RRTKWFQPVRPLKPGDLVVVVEEGKRNGWIRGRIIEVLPGKDGQVRRAVVQ
FT                 TGHGSITRPATKLALLEVQGPPTEDSGTPRYGVPELHGPG"
XX
SQ   Sequence 6780 BP; 1926 A; 1605 C; 1752 G; 1496 T; 1 other;
     acaaaatctt caagatttgc gattgattcg atgtccacgt ggtagtcatc cggcatagga        60
     atggatcctt cggagagcca ctgtatgttg tgcaatcgac caaacaacgt cgacaacctg       120
     gtgcagtgtg accgttgtga tggatacgtg cattactcgt gtgcagaggt gggagattcg       180
     attgccgacc ctgatcggag tttcacctgt aagaggtgcg tcgaaaacga tgatatcgtc       240
     actgtttcct cacatcgcac gagccatgta agctccttac gaacctctcg tagtagtaac       300
     tcagcacgga tagcattacg actgcaacag ctagagaagg agaaggaaaa ccgcctccga       360
     gaactcgaag acgcagagaa gttccagagg ttgcgacgtc aggtcgaggt ggaatttgag       420
     cagcaacaat ttgccattct agatgcacag cgtacaagag gaagatgaac atcgcagctt       480
     tagaagtaga gtgagttcta agcagatccg agatagtacc agggagtggg tcggtgcgtc       540
     gaaaccgact gatgtagtga atgcccagat agctacgacg tcgactcact tatgttcctc       600
     ccagttgggt ggaacccagc agaacgctga tgtcgcatcc atagatcaga tcgcatcaac       660
     agcaactaat accgagcaag caaaagaggt aatccgaaca ccgccgacag gggcacagca       720
     aggaagggcg cctattacgt cgacgagcgc aatcggtgca tttagcgagc aacaaaccac       780
     tcagatcatc gaacaccagg gagaggcatc gccagctatc atcgggccaa gggcggacat       840
     gccagtcgaa accgttccat catcccatag gcatactggg gtgccgaaga caaatgcgtt       900
     tgtacagcaa aaaacagcag aatctctgat gagggccaac atggagacgc catctctcgc       960
     ggatggagca cgtattgaga accctatcac tgcaggtttg tctacggaga gtcaggtgag      1020
     aactagtgtc agtacgttgc acgtaaggtt acagcctata gctgaggtaa ctagtacacc      1080
     tttaatacca tcaataaaac gaagcgtaga tagtcagtca gggtataagg cacaccacaa      1140
     aattattgcc cagccaagca atcagttagg agtagttcag ggccaactaa cacgaaatcc      1200
     taacacggtt cctggggcag aatcggggga acctcctccg gggttgaacg taacagggca      1260
     aataccgctg tcaaaattcg cgcagttagg caaatcgaaa aaggctgtgc tccaaccgcc      1320
     attggagcga aagcgtttaa acgatccgaa tccgtccgct attatacccg gtcagtgtaa      1380
     tgagtcaacc ctgttatctt tgccaccaac gggttaccag cactttagtg cgtcaaatcg      1440
     ccaagaatta ccaccaacat cgggccgtga gcagtataca gtgacaagtg ctaaacatca      1500
     atcagtgatt caaccacctc ccggatacga aaatttcggt gaggaaaccg actgcagcat      1560
     ctgggattca gccgtggtca tcagtccctc agcctggaac aagcaatctc cagccatcat      1620
     tgccacatca accaggatac ggctatccgg ggtataagct gaattcgact gagtacatgc      1680
     cgtcaaaaat ctcaacgatt cccaagtcat cccaggctgg agaatcaacc tgaacaacag      1740
     atgtactcgg aaccactgtc gcggtttagt catcagtgcg cccgccagat cagccgaatc      1800
     aatcgcgtcg agcagggccc acagcagagc aaatggctgc tcggcaagtc atcccaaagg      1860
     aattgcctgt gttttccgga gatcctcgga ttggcctctg ttcctgagtt ccttcaataa      1920
     ctcgacggaa gcgtgcgggt acaacgatgc cgaaaatttg gcaaggctcc aacgctgttt      1980
     acgtggacat gcgctggaga gcgtgagaag tcgattgctg attccggagt cagtgccgta      2040
     cgtacttgcg acgctggagc gtttatacgg cagaccggaa gtgattatca atgcacttct      2100
     aaaacgaatg cgggaaattc cctcgcctcg tggcgatgat ctgaaaacgc ctatcaaatt      2160
     tggaatgggt gttgagaact tggtggagca catgattctt gcccaacaat tccagcacat      2220
     cagcaacccc atgttgctcc aagagatggt agataggctt ccgcctaacc tgaagctaca      2280
     gtgggcgtcc tacaagcgca actacaatcc agtgaacatg gcgacgttca acggtttcat      2340
     gaaggatcta gttacgatgg ccagcgacgt cactctactg accagtgtag ggcagctgcc      2400
     agcagaaaaa cacgacaggg gaagacgcga aaaatcctct aaggaaaagc ttttcgtcca      2460
     tcaacaatcc cccgcttcaa ccgacatgtc tggggccgaa tcaagcggtt ccatccctaa      2520
     accctgcgtc aactgctcca aaacagatca tcgtattgcc gagtgtccag tattcaaacg      2580
     actgactgtg gatgaaagat ggaaggtttt gcggcagaaa gggctctgcc gaatatgctt      2640
     agttccacat cgatcatggc cttgccggtc aaagcaagaa tgcggagttg gagattgtcg      2700
     catgcgccat catgctctac tgcacttaag aaaagcggca tctggagtac cctcatcgac      2760
     aacagcagcg gaaaggaacg tcgtccacca gaatcaccat tcagttactt cttgtgctct      2820
     gctgcgctat ctgcctgtga cattgcacta caatggaaag agtgtggaaa tattcgcgtt      2880
     cttagatgat ggatcttcgt caacaatgat ggatgcggag gtagcggaac agctaggtgc      2940
     agtaggactt gctgaaccgt tgtatttagg ctggacaggc gatatatcga gaacggaaaa      3000
     agactcccag catataagag tcgcgatatc cggattcaac atggccaagg agtttccact      3060
     gaaagccagg actgtaggac aattaaaact cccgagccaa actgtgaact acgaggaact      3120
     ttgtttggat catccatacc ttagaaagct acctctgtcc agctacacca atgccgcacc      3180
     tcgacttatt attggcgtag acaacgctaa gctaatcagt gctcttaaaa gccgtgaaag      3240
     cagaactgga caactagttg cagttagaac tcgactagga tggtgcctct atggacgaca      3300
     tgccaccact gacagcagcc ttgtagacta cgtgaacacg catatggagt tgcacgaagc      3360
     agacacagat ttgcacaatc tgttcaggca atttatggcg gtcgatgaag caascgtcaa      3420
     acggagtcca ctttcaaacg aggataagag agcttcggat attctacaga aaaccaccag      3480
     aagagtagac ggaagactgg aaactggact gttgtggcgg agcgatgagc cttctcttcc      3540
     agatagctac gatatggctg tccgtagaat ggaagccctt gagcgtaaat tgtcgaagga      3600
     tgaccaactg cgggaaaaag tcagagggtt gattgaggag taccttgcga gcggatatgc      3660
     tcatcggatt acaacggcag agctggatac tacggaacca ggacgtgtgt ggtacttgcc      3720
     cctgggggta gtgaggaatc cacgcaaacc agaaaaggtc cgtctgattt gggatgctgc      3780
     agcccgagcc aaaggaattt cgttcaacga tatggtgttg aaaggaccgg atctgttgac      3840
     tgctcttcca gttgttctat tacgcttccg tcagaaaagc gtggcattca gtggagacat      3900
     taaagaaatg tttcatcagt ttcggattcg gaaggaggac agacaagcgc aaagattcct      3960
     atatcgggaa aaccctggaa aaccaccaca gatcttcgtg atggatgttg ccacgtttgg      4020
     cgctgcgtgc tcaccttgca ttgcgcagta tttaaaaaac aaaaatgctg aggactacaa      4080
     agagcagtat ccggaagcag ctcgtgccat catcgaaaac cactatgtag atgattttct      4140
     ggatagtgtt gacacggtgg atgaagcagt ggagctcatc gaagatgtga agcatgttca      4200
     cgcccaagca gggatggaaa ttcggaactt tgcatccaat tcttccgagg ttcttgagcg      4260
     tattggagaa gccagcagaa ctcaacagaa gtcgatcaac cttgaagcga atgtggaaag      4320
     ggttcttggc atggtatgga atccgtccga agatacgttc acgttcgagc tggacctgaa      4380
     ggaagaggtg cagaacatcg tagcgaacaa aatagcacca acgaagcgac aagttttgcg      4440
     aacagtgatg tccctatttg atccgttggg tctggtggcg cattttgttg tgcacggaaa      4500
     gcttatcatg cagcgaatct ggagggaagg attagactgg gatgaacaaa taagcggcga      4560
     aatactagaa gactggtgta aatggagcag attgttgacg aaacttaacg aagtcactgt      4620
     tccaagatgc ttcttttctg gaaacggtag agctcacaac gatgcgcaga ttcacatgtt      4680
     cgtggatgct agcgaaaacg cgtatgcttg cgtagcgtac cttagaagtt acggcaacgg      4740
     ggctccacaa tgtaccctga tagcggcgaa gacaaaagta gcacctctaa aaccgctatc      4800
     gattccgagg cttgaattgc aagcggctct tatcgggagc cgtttactag agacaatttg      4860
     caaggcttta accatcccaa ttaccacgcg atatctttgg accgactcta caactgtttt      4920
     agcatggcta agatccgaaa cacggcgata tcaccagttt gtcggctttc gagttggaga      4980
     gattcttacc acgactacaa tcgacgaatg gaggaaggtt cagaccaaac taaatgtagc      5040
     tgatcaggcg acaaagtgga aggacggacc tagttttgac ccggaagatt ggtggtattc      5100
     cggaccaaga tttctatccg accctgcaga gagatggatt actgatttga ctctgcattc      5160
     gtctgaggaa cttgcgacaa cggtagatct tcgttcttca ttcatgcacc atcgatctct      5220
     acatcaacag cctttcatag ctgtagacag attttctagc tggcaaaggt tgctgcgagc      5280
     tactgcatac gttatcagag cagccaaact attccttgga ctcagagcaa cgggcccgtt      5340
     gatacaggaa gagctggcaa atgcggaaat actgctgtgg cgacaggtgc agatgcaggt      5400
     ttacccggat gaatatgtaa cgctagtgta caacaaggaa catccaaagg aagaacctag      5460
     gcggttggag aaaacaagcc cgctgtacaa gatgtcaccg atactggacg acaatggagt      5520
     attgcggatg aacagccgaa taaccagagc accaatagta tccagggatt taaagtatcc      5580
     ggtttttctt cctaaagaac accgggtaac tgcgttgctt gtggaaagct accataaacg      5640
     tttcctgcat agaaacaacg agacggtgct caacgaaatg aggcagcgtt tcttcatccc      5700
     tcagcttcgt tcggttgtgt ccaagattgc aaaacagtgt cagcattgtc gtgtatggaa      5760
     ggcgactcct caagtgccaa tgatggcacc tctacccaca attcggctaa cgcccttcat      5820
     ccggccgttc acgcacactg gagtggacta cttcggtcca attttcgtga aacaaggacg      5880
     cagtatggtc aaacgatgga tagccctttt cacgtgcctg tctatcaggg cagtgcacct      5940
     tgaggtagtc catagtttat caacacagtc atgtgttcta gccattcgga ggttcgtcgc      6000
     acgcagaggt tcccctgcta ccttttgttc cgacaacgga actaactttg tgggtgcgag      6060
     taatatactc aaggagcaaa ttcgcaccat agggaagagc tgcgcagcaa ccttcacaaa      6120
     cacggatacg aaatggctct tcaatcctcc acttgcgcct catatgggcg gaccatggga      6180
     gcgcatggta aggtcggtga aggtcgcaat gtcggcaatt gcagatcatc ctcgacatcc      6240
     cagtgatgaa gttctggaga ccatagtact ggaggctgag gccatagtga actccaggcc      6300
     actaacctac gtgccgctgg aacatgagaa tcaggaagca ttgtctccaa accatttcct      6360
     gttgtacggg acacaaggga tcaatcaacc atgccaggaa ttaactgagg aacacgtact      6420
     gctgagagac agttggaagt tggcaaagta cctcgtcgat accttctgga ctcgttgggt      6480
     gcgcgaatat ctcccgaccc ttacgagacg caccaagtgg ttccagcctg ttagaccatt      6540
     gaaaccgggt gatctggttg tggtggtcga agaggggaag cggaatggat ggattcgcgg      6600
     aagaataata gaagttctac ctggaaaaga cggacaagta cgtagagcag tagttcagac      6660
     gggtcatgga tcaattaccc ggccggccac taagctggcc ttactggaag tacaaggacc      6720
     gccaacagaa gactcaggga cacccagata tggcgtaccg gaactacacg ggccggggga      6780
//
ID   BEL-610_AA-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-610_AA_;
KW   Pao_Bel_Ele203; BEL-610_AA-I; BEL-610_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-518
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 518 BP; 185 A; 90 C; 90 G; 153 T; 0 other;
     tgttggcgaa accactgggc tgtttcctaa cccgttgaag tgagttcctg agtacgccac        60
     tcgctttaat tgtccgtcat gcgttgacag ctttggggaa acgtcattgg gaagatatgt       120
     tcatgatcat tcaaaagcaa acatttcgaa caatagaaag tgaagataga aggtcgattt       180
     attgaagcta aagttaatcc taaagtaaaa ttcattgaat tcgtattata attgaattta       240
     tgtacaattt gtgcaatagc caggtagata tatatcctaa attataaatg cattactcta       300
     aacctataaa ctactatcac agattgaatt tagtacggag aaaacagtga ggacaaatat       360
     aacctaaaat tagtaaagaa caccaaatgt aagtaaacct tataaaacta tgaatttgtc       420
     taaaactaac atgcaaaata aaattctagc ttgaagctgt ttctaacgga ctcgctatca       480
     ggattgttca ttcccgtccg aactgaaagt tctcccca                               518
//
ID   BEL-611_AA-I repbase;    DNA;    INV; 5931 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-611_AA_;
KW   BEL-611_AA-LTR; Pao_Bel_Ele16; BEL-611_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5931
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4582-5154] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           277..5532
FT                 /product="BEL-611_AA-I_1p"
FT                 /translation="MSTERRIKALKLRLRSLMTSLNLIKVFVDDFDEDTQA
FT                 DEVPVRLENLIKLWSDYNTVQTELEALDEAALEAHLKERSQLESTYYRVKG
FT                 FLLAHNKAANNQNLMSPTHSEPQSLSSASQVRLPDVKLPVFDGKVENWLNF
FT                 HDLYTSLVHSAVGLSNIQKFYYLRSSLSNAALQLIQTIPISANNYPVAWKL
FT                 LVDHYQNPARLKQTYVDSLFDFSPLKRESATELHSLAEKFEANVKVLQQLG
FT                 ERTEFWDVLLIRLLSTRLDSTTRRDWEEYASAKGAVIFKDLLAFIQRRVTV
FT                 LQSIQAKVTETLPLNQQKRSIQRAVSSHGASQVSHRKCIVCSDHHPLYMCA
FT                 TFSKLSTDEKEKEVRRHQLCRNCLRKGHLSKECSSSSNCRKCRGRHHSQLC
FT                 PNEPTSSSTSKPSSPQQPNSTSSSNSDPPTTSASAAVDETISCATIGQNKK
FT                 TVLLATALIILVDDNGVEHIGRALLDSGSECCFVTERFSQRIKVQRRKINL
FT                 PISGIGQASTQAKQKFTSTIRSRVGDYAATVEFLVLPRVTIDLPATSVDTS
FT                 TWNMPPGIQLADPSFDSSSPVDIIIGAEIFFELFRVPGRIPLGDHLPALVN
FT                 SVFGWIVSGKSSSGSPSSPVVANLATLSEVHQLMEKFWKIEEIDSSTTYSV
FT                 EEHSCEEHFRQNVSRASDGRYVVRLPFKENFLEHLSDNRRIAVRRFHLLQG
FT                 RLLRNPVLHQQYKAFIDEYLELGHMHRIHEYDDAKVNHYYLPHHAVLREES
FT                 TTTKLRVVFDASCKTPTGYSLNDMLMVGPTVQEDIHAITMRSRKHQVMIVA
FT                 DIKMMYRQILVDSRDTPMQLIVWKENPDQPLETFELKTVTYGTASAPFLAT
FT                 RVLIQLADDEGTEFPLAASVLKKDFYVDDLFSGGRNAPEVVNLRNQLDALL
FT                 ARGGFQLRKWASNDESVLEGIPPENRALQASFAFDPDQVIKTLGLHWEPAN
FT                 DCLRYRIELPFETTIRLTKRHALSLIARLYDPLGLVGPVVTTAKVFMQDLW
FT                 TLKDNNGTQWGWDQELPAEYCARWIIYQSLLPRLNELRIERCVLLPDSDSV
FT                 QIHIFSDASQIAYGACAYIRSTNALGLIKVSLLTSKSRIAPLKRQSIPRLE
FT                 LCGALLAAQLYKKVKTSLQIDAQVFFWVDSTVVLHWLNESPSIWSTFVANR
FT                 TSQIQLATQDCQWNHVSGVENPADCISRGMSADTILESNLWWHGPEWLRRQ
FT                 QSQWPIPGAQLTNSPEALKEKRRTSVAATTSRSEPTFIDLLTEKHSDYQRL
FT                 LRVVAYCQRFARNCQKLSSERVKTTFFIVDELREAETVLLRLVQQQCFAEE
FT                 WKQLHKSQPIAMTSRLKWFHPFMSSEQLIRIGGRLGNTEGTYDCKHQIILP
FT                 SSHMISILLARSYHIKHLHAAPQLLINLLRQRYWITGARKVAKLVVHRCVT
FT                 CSRARPKMVQQLMAELPSSRATASRPFTITGVDYWGPIQLAPIHRRASPRK
FT                 AYVAVFVCFSTKAVHIELVGDLSTPKFLQALRRFVSRRGLCSDLHSDNGRN
FT                 FVGAAKELQELVRSKNHQESIGKECNTLGIRWHFNPPKASHFGGLWESAIR
FT                 SAQKHFVRVLGPHTLPFDDMETLLCQIESCLNSRPIVPLSDDPSDYEPLTP
FT                 GHFLIGTSLKAVPDNDLSSIPLDRLQKWHRVQKMFQDLWKRWHLEYLSTLQ
FT                 PRAKWCNPPIQILPDQLVVLRDENTEPMRWPMARILQVHPGSDGVVRVVTV
FT                 QTPTGRYVRPVAKICLLPIASPTSSSDQAATN"
XX
SQ   Sequence 5931 BP; 1591 A; 1528 C; 1302 G; 1509 T; 1 other;
     tttggtcctt cgagccggat cagcgtcgat ctccgctgtt ccaacatccc tacgcctggt        60
     gagtgagtcg ccattgcatg actggaaagt accagaagtt cttcggattc gccatctttc       120
     tgcctacact ctcttcaagt tttggatttg cccgccgttc aactttaact cattattcaa       180
     ggcattgaaa ttgcctctag caggtgatta aatttccaat tatttcactt tctcgtgtgt       240
     gcgttctacg ctagcctttt gtccccagat cccgccatgt caacggaacg ccggatcaaa       300
     gcactcaagc tgcgactcag aagcttgatg acgtcgctga atttaatcaa agtgttcgtc       360
     gatgacttcg acgaagacac ccaagcggac gaagtcccgg tccgattgga gaatctgatc       420
     aagctatggt cggattacaa cacagtgcag acggagctag aggcacttga tgaagctgca       480
     cttgaggcac atctgaagga acggtcgcaa cttgaatcaa catactaccg agtcaaaggc       540
     ttcttgttgg ctcataataa agcagcaaac aatcagaatt tgatgtctcc aactcattca       600
     gagccgcaat ccctttcgtc cgcatcgcag gtgcgattgc cggacgttaa gctcccggtc       660
     ttcgatggaa aagttgaaaa ttggcttaac tttcatgatc tctacacttc gcttgttcac       720
     tcggctgttg gtctatccaa tattcagaaa ttttattatc tacgatcctc gctttcgaac       780
     gccgctctgc agctgattca gacgattccg attagtgcca acaattatcc tgtggcgtgg       840
     aagctactag tagaccacta tcaaaaccca gcgcgattaa aacagacgta tgttgattct       900
     ctattcgact tttcwccctt gaagcgtgaa tcagcaacgg agcttcacag cctagcggag       960
     aaattcgaag ccaatgtcaa agtgcttcag caactcggag agcgaacgga attttgggat      1020
     gtcctactta tccgtttgct tagtacacgc cttgactcaa ccactcgaag agactgggag      1080
     gagtatgctt cagccaaggg agccgtaatc ttcaaggatc tacttgcctt cattcaacgt      1140
     cgcgtgacgg tactacaatc tatccaagcg aaggtgactg aaaccctgcc gttgaatcaa      1200
     caaaaacggt caatacagcg tgcagtgtcg agccacggag ccagccaggt tagccatcga      1260
     aagtgtattg tttgttccga ccaccatccc ctctacatgt gtgcgacgtt ctcgaagctt      1320
     tcaacggacg agaaggaaaa ggaggttcgt cggcaccaac tttgccgaaa ctgtttaagg      1380
     aagggtcatc tttctaaaga gtgttcgtca tcctcaaact gccgcaagtg ccgtggtcgt      1440
     catcacagtc agctttgtcc gaacgagcca acttcttctt caacatcaaa gccgtcaagc      1500
     cctcagcagc ctaattcaac aagttcttcg aattctgatc cgccaaccac gtccgcctct      1560
     gccgcggtcg atgaaacaat cagttgtgct acgattggtc agaataagaa aactgttctc      1620
     ctcgctaccg ccctcatcat tcttgtagac gataacggcg tcgaacacat tggtcgtgcc      1680
     ctactagatt ccggtagcga atgttgcttc gtgactgaga ggttttccca gcgcatcaag      1740
     gtgcaaagaa ggaagataaa cttaccgata agcggaattg gtcaagcatc aacacaagcg      1800
     aaacaaaagt tcacctccac cattcgttct cgagtcggtg actacgccgc taccgtcgaa      1860
     tttctagttc tcccaagagt gacaattgac ttaccagcga cttcagttga cacttcgacc      1920
     tggaatatgc ctcctggtat tcagctggct gatccatcgt tcgatagtag cagccctgtc      1980
     gacattatca taggcgcaga aatatttttc gagttgttcc gagtccctgg tcgcattccc      2040
     cttggtgacc atctccccgc gcttgtcaat tctgtatttg gctggatagt gtcaggaaaa      2100
     tcctcatcag gctcaccgtc ttctcccgtc gtcgctaacc tcgcaacact gtcggaagtc      2160
     catcaactta tggagaaatt ttggaagatt gaggaaattg attcgtcaac aacctactcc      2220
     gtcgaagagc attcatgcga ggaacatttt cgtcaaaatg tgtcacgagc ttctgacgga      2280
     cgctacgtag ttcgtttgcc attcaaagaa aactttctag agcatctaag cgacaaccgt      2340
     cgcattgcgg ttcgccgatt tcaccttctg caaggtcgtc tgctgcgcaa tcctgttctt      2400
     catcaacagt acaaggcttt cattgatgag tatctagagc ttggacacat gcatcggatc      2460
     catgagtatg acgacgctaa agtcaaccac tattatcttc cacatcacgc tgttttacgt      2520
     gaagaaagca caaccacgaa gctgcgagtt gtctttgatg catcttgtaa gacaccgaca      2580
     ggatattcac tcaatgatat gcttatggtg ggacctaccg tccaggaaga cattcatgca      2640
     atcacgatgc gatcccgcaa gcatcaagtg atgattgttg cggatatcaa gatgatgtat      2700
     cgccagattc tcgtggactc tcgagacact ccaatgcagc tcatcgtttg gaaagaaaat      2760
     cccgatcaac cattggagac atttgaactg aagaccgtga cttacggaac agcgagtgca      2820
     ccctttcttg ccacccgcgt attaatccaa ttagctgatg atgaaggcac agagtttccg      2880
     ttggctgctt cagttctaaa aaaggatttc tatgtggacg atctcttttc cggcggacga      2940
     aacgcaccag aggttgtcaa tcttcgaaat cagttagatg cactcctagc gaggggtgga      3000
     tttcaactaa gaaaatgggc atcgaacgat gaatccgttt tagagggaat tccacctgaa      3060
     aacagagcgt tgcaagcatc cttcgctttc gaccctgacc aagtcatcaa aactctcgga      3120
     ctacactggg aacccgccaa tgactgtcta cgatacagaa ttgaattgcc atttgaaacc      3180
     acaattcgat tgaccaaacg ccacgctctt tcactcatcg ctcgtctcta tgacccgcta      3240
     ggcttagtag ggcctgttgt aacgaccgca aaagtgttca tgcaggacct gtggaccctt      3300
     aaagacaaca acggaacaca atggggttgg gatcaggagt taccagctga atattgcgca      3360
     cgatggatca tctatcaatc actactgcca aggctaaatg aactccgaat cgaacgctgc      3420
     gttttgcttc cagattccga cagcgtacag attcatattt tttccgatgc ctcgcagatt      3480
     gcttacggtg cttgcgccta tatcagatct acaaatgctt tgggactgat taaagtctcc      3540
     ctgcttacct cgaaatctcg gatagcacct ctaaaacgac agagcatccc acgcctcgag      3600
     ttgtgtgggg ctttactggc agctcaatta tataaaaagg taaaaacatc cctacaaatc      3660
     gacgctcagg ttttcttttg ggttgacagc accgttgtac tacattggct taatgaatca      3720
     ccatccattt ggtcaacatt cgtcgcaaat cgtacatcgc aaattcaact cgccactcag      3780
     gactgccagt ggaatcatgt atccggagta gaaaacccag ccgactgcat ttcgcgcggt      3840
     atgtctgctg acactatttt ggaatcaaac ctttggtggc acggaccaga atggttacga      3900
     cgtcagcaaa gtcagtggcc aatacctggt gctcaactta ctaactcccc tgaagcactg      3960
     aaggaaaagc gtcgaacatc tgtggcagct acaacatctc gcagcgaacc gacctttatc      4020
     gacttgctaa ccgaaaaaca ttctgattac caacgtcttc ttcgagtagt agcctactgc      4080
     caacgttttg ctagaaattg ccagaaactg tccagcgaaa gagttaaaac tacatttttc      4140
     atcgttgatg aactgcgaga agcggaaacg gttctacttc gactagtaca gcagcaatgt      4200
     ttcgccgaag agtggaagca gcttcataaa tcgcagccca tcgccatgac atcccgcctc      4260
     aaatggtttc atccgttcat gtcctcagaa cagttgatac gaatcggtgg taggttggga      4320
     aacactgaag gaacgtatga ttgcaagcac caaattatct tgccatcatc gcatatgatc      4380
     tcgattctcc tggctcgtag ctaccatatt aaacacctcc acgcagctcc tcagctactt      4440
     ataaatttac tccgacagag gtactggatc acaggggcca gaaaagtagc taaactggtg      4500
     gttcaccgtt gcgtaacttg ctcgcgggcg cgtccaaaga tggttcagca acttatggcg      4560
     gagcttcctt cttcgcgagc cacggcgagt cgacccttta caattaccgg agtggattat      4620
     tggggaccca ttcaactagc acccattcat cgccgtgctt ctcccaggaa agcctacgta      4680
     gcagtttttg tctgcttcag taccaaggcg gtgcacattg aacttgttgg agatctcagt      4740
     acaccaaaat tccttcaagc actaagacga ttcgtatctc gccgtggtct ctgctctgac      4800
     ctacacagcg ataatggtcg gaatttcgta ggagctgcaa aagaactgca agaactagtc      4860
     agaagcaaga atcaccaaga atccatcggg aaagagtgca acacgctggg aatccgctgg      4920
     catttcaatc ctccgaaggc ttcgcatttc ggtggacttt gggagtctgc catacggtcg      4980
     gcacaaaagc actttgtccg ggtgcttgga ccacacacgt taccttttga tgacatggaa      5040
     acgctcctgt gtcagatcga aagctgcttg aattctcgac caattgtccc acttagcgac      5100
     gatccctccg actacgagcc gcttactccg ggtcattttc tgattgggac gtcattgaag      5160
     gctgtcccag acaacgatct aagtagcatt ccattggatc gtctccaaaa atggcatcga      5220
     gtccagaaaa tgttccagga tttgtggaaa aggtggcacc tggaatacct ctcgacgtta      5280
     caaccacggg caaaatggtg caatcctcca atacagattc taccagatca actggtagtt      5340
     ctgcgcgatg aaaacaccga gccaatgcgt tggcctatgg cacgaatact tcaagttcac      5400
     ccgggttcag acggagtagt tcgcgtcgtt acggttcaga cacccaccgg ccgatatgtg      5460
     cgtcccgtag caaaaatttg cctgcttccg attgcatcac cgacatcatc gtccgaccaa      5520
     gcagcaacaa attgaatcca gaatatgaca tcaactagta ctattccaag gcgccttcaa      5580
     caattcatct gtacaggatc acctaaacgg aaagaataca atgcccttca tttgaaggga      5640
     ctaggtaagc accagtccaa tcaaattaat tatgtttaaa cccgctaccg ggtctcaatg      5700
     tttgcagaca ccatcagaaa tttcggtttg cttgacgttt cattgaacaa caatgttgct      5760
     gtcacactca tccgtcaaag ttacatcgat tcgtcgacga caagggacaa cccattcgtt      5820
     tgcgttcaag gtacatcgac taccaacagg tgcaaccaac gtgaaaggcg ttcgtttgaa      5880
     atcatacaag tggatcagaa acaatgttcc tgaaggggcc aggatgtttc g               5931
//
ID   BEL-611_AA-LTR repbase;    DNA;    INV; 483 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-611_AA_;
KW   Pao_Bel_Ele16; BEL-611_AA-I; BEL-611_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-483
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 483 BP; 164 A; 92 C; 100 G; 127 T; 0 other;
     tgaaccctat cacgaaattt ggaacgagga gtcatctggt tgtgaagtgc atcaacaata        60
     ggctgtcaaa tcgtcggtca tcgatgaaaa aacgcaaatc aaggttttag tatggcggcg       120
     taccttcttc cgctgtacct tgtgtataaa agggaaacaa tgacaagggc aacttctctt       180
     actgtggtgc gacagccaac tctacacgcc gacgtcataa gcaaatcaaa acaaacgaaa       240
     aagtgaaatt tattgaaatt atagaaaata gtgaacttac attttgaata aagctatagt       300
     aatttaagtg gaaaattaag aacaataaag tggagttaaa ttataataaa cttaccgttg       360
     agttgtgtcc aagtgctacc tgaaaggaaa aggaagtgag taatacttac cgctgctgtc       420
     ctggaaatcc atccgcttca ttgtactggc caatcatccc gctgctgttc gctgtgctaa       480
     cca                                                                     483
//
ID   BEL-612_AA-I repbase;    DNA;    INV; 6176 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-612_AA_;
KW   BEL-612_AA-LTR; Pao_Bel_Ele159; BEL-612_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6176
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5227-5787] - Integrase core
CC   'GGGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(22..2499,2503..6174)
FT                 /product="BEL-612_AA-I_1p"
FT                 /translation="MSNPDPSATNTSDPKTPENKDLTTHCVCCDRPETVDD
FT                 CVQCDQCNGWWHMMCAEVSASVADRSWTCGHCLPLSVSSRTTTSSVRVARL
FT                 ALKKKQLEEQHAMEQRHLAEKYKLMEEELNEMDETSSNRSRMSRRTSLEKV
FT                 KLWQRKYAEQSGDLHDIPADGRQAAGDALCNQGTNDRGDLAHPSNVKEPTP
FT                 PPPAIKSPHERAEVDVNRLDSVQRGRLNAVVIEARQESTLYKPPLNSTVKS
FT                 LSIPELNNAKWQHNTGTIPKQQKVINNPGKTDPQMPPVAPQGKPLFDHTTS
FT                 TSLPPKSENSLQQIIKQFGSLAPSTMLAFNRTNMNALGTNTLPPSGTSTGF
FT                 VPQANLELSSGSVPPPAEQPNVGDLPQANSISHSVSVPPLVGLQTVGSSPQ
FT                 VNPGFSIGTVPPPPGLPIVENFTPSPSQLAARQVMSRELPTFSGDPADWPI
FT                 FISSFMNSTLACGYNSAENLARLQRCLKGHAYESVKSRLLLPESVPSVIET
FT                 LRLLYGRPELLISALLQNVRSVPAPKPEKLESIIDFGLAVRSLCDHLEAAG
FT                 QQEHLSNPTLLMEMVEKLPAHTKLQWADYMQQHPLVNLKTFGDFMLRVVTS
FT                 VSRVTMYVGGSSSDQHKTKQKGVVYAHTSEAELMHEPVFEQNRVCFCCKKP
FT                 GHRVAECSIFKAYSVDDRWKFVQSKGLCRSCLNSHGRRSCKNATQCVFEGC
FT                 QYRHHPLLHSNRSDNVSERSTQGLSTVQNHIHRQFKQALLFRIIPVVVSGP
FT                 RATIETFAFLDDGSDLSLIESSLVDQLGIDGWKKPLCLKWTGNVTRIESES
FT                 KHVRVMIRGMNSQQQFSLNDIRTVELTLPEQSLNYDELSQRYRYLQGLPVD
FT                 SYDKAVPRLLIGVNNANLTVPLQVREGRKDEPIAVRTRLGWCIFGGRGNVA
FT                 AHSLNYHACECSNDQDLHNTVKEYFAMDDAGVKSPVVLESVDDNRARKIME
FT                 QTTVRRGDRFETGLIWKYDVIEFPDSFNMAVKRLECLERRMMRDPTLATNL
FT                 KNQIMEYQLKGYAHRATEEELSQADPKRVWYLPLGAVTNPRKPGKVRLIWD
FT                 AAAKVDGISLNSMLLKGPDQLTSLPAVLSRFRQYPVGVSADIKEMFHQLLI
FT                 RPADRHSQRFVFRNNPADPVDIYLMDVATFGSTCSPASAQFVKNQNAEAFV
FT                 NIFPRAVEGIVDNHYVDDYLDSFENEDEAERVSREVRSIHQKGGFLLRNWL
FT                 SNSTIVLRGLNEEEQKDTKCLYLSGLENSDRVLGMLWKTTEDELWFPMIMK
FT                 EEVQKVIESGERPTKRQMLKCLMGIFDPLGLLSVFLVHGKILLQDVWRTGL
FT                 QWDEKVPERIFERWIRWISLFPEIGNLRIPRCYFKGASAQMYGRLQLHIFV
FT                 DASEAAFSAVAYFRVVNAEGNPECSIVAAKTKVAPLKPLSIPRLELQAAVL
FT                 GSRLMSFVQKSHRIEVKQRFMWSDSATVLAWLRSDHRRYKQYVACRVGELL
FT                 STTDVEEWRWVPTKLNPADAATKWGKNACPKDNDEWFKGPKFLRLSEEEWP
FT                 KQTSFPIQSEEELRPCFMVQEVIIPESVVDFSRFSKWRKLLGAIAYMHRFV
FT                 DNCRRKHRGEAQNSIYLSPEELRRAKNTVMRAVQWQEFPDEMITLSRGLTG
FT                 LPKTSSLYQLTPTIDECGVLRVDGRIGAAPNTAFDSMFPVILPRKHLVTNL
FT                 VTEDFHRAFHHGNSETVVNEIRQFYHISRLRTVVKQIAKACQWCKVNKATP
FT                 KIPRMAPLPVARLSSYSRPFTYTGIDFFGPLLVKVGRSAAKRWICIFTCLT
FT                 IRAVHVEVAHSLSTSSCMSCIRRFVCRRGAPAEIYTDNGTNFQGAERLLKE
FT                 QLLKMHDELAATYTNTDTKWIFIPPGAPHMGGAWERMVRSIKSAMETAYNS
FT                 DRKLDDEGLATLVVEAEGIVNSRPLTYLPLDAAEGEALTPNHFLLGSSRGV
FT                 RQPAIPFNDPAVAVKNSWNLIQHQLDVFWKRWIREYLPMLTKRMKWFGEVT
FT                 PIAEGDLVLIVDDGRRNGWIRGRVKDVLVAADGRIRQATVQTARGILRRPV
FT                 SKLAVLEVELGGKTGTDGQCYGGE"
XX
SQ   Sequence 6176 BP; 1745 A; 1449 C; 1556 G; 1422 T; 4 other;
     aaactttaag aattgttcgc catgtcgaat ccggatccat cagcaaccaa cacgtccgat        60
     ccgaaaacac cggagaataa ggacctaact acccactgtg tttgttgtga tcgtccggag       120
     acggtcgatg attgtgtcca atgtgaccaa tgcaacggat ggtggcatat gatgtgcgct       180
     gaagtgtcgg cttcggtagc cgacagatcg tggacctgcg gacactgttt gccgcttagc       240
     gtttcttctc gaaccacgac gtctagcgtt cgggtggctc gcttggcctt gaaaaagaag       300
     caactggaag agcagcatgc tatggaacaa cgccacctcg ccgagaagta caagttgatg       360
     gaagaagagc tgaatgaaat ggacgagaca agcagcaacc gaagtcggat gagcagaagg       420
     acgagcctgg aaaaagtgaa actatggcag cggaaatacg ctgaacaatc cggagacctg       480
     cacgatattc cagcggatgg tcgtcaagca gctggcgacg ccctatgcaa tcagggtaca       540
     aacgatcgtg gggatttagc tcatccgtcg aatgtcaaag aacctacacc accaccacca       600
     gcgatcaaga gtcctcatga gcgggctgaa gtcgatgtca acaggttgga ttcggtgcaa       660
     cgaggaagac taaacgctgt cgttattgaa gctcgccagg agtccacgct atacaaacca       720
     cctttgaatt caacagtaaa atcgcttagt attccggagc taaacaatgc taagtggcaa       780
     cacaataccg gcacgatccc taagcagcag aaggttatca acaatccagg taaaaccgac       840
     cctcaaatgc cccccgtagc acctcaaggt aagccacttt tcgatcatac cactagtacg       900
     tcattaccac caaaatcaga aaactccctc caacaaatca tcaagcaatt tggtagcctg       960
     gcaccatcta ccatgcttgc ctttaatcga acgaatatga atgcactagg aacaaacact      1020
     cttccacctt ctggaacgag tactggcttt gtgccacagg caaatctgga gctatcttcc      1080
     ggatccgttc ccccacccgc ggaacagccg aatgttggcg atttgccaca ggccaattcg      1140
     atttcacatt ctgtatcagt tcccccactc gtgggactgc agactgtagg ttcttctcca      1200
     caagtaaatc cgggtttttc aatcggaaca gttcccccac cgccgggact tccgatcgtt      1260
     gaaaatttca ctccatcccc ctcgcaatta gccgcacgtc aagtaatgtc acgtgaacta      1320
     ccgacgtttt ccggcgaccc tgcagattgg ccaatattta taagcagctt catgaacagt      1380
     acgcttgcat gcgggtacaa ctctgcagaa aatctcgcgc gtctacaacg ctgcttgaaa      1440
     gggcacgcgt acgagtctgt caaaagtcga ttgttgcttc ctgaatcggt gccatcagtg      1500
     attgaaaccc tccgtttgtt gtatggacga ccggaattgc taatcagtgc ccttctacag      1560
     aacgtgcgta gtgttcctgc acccaaaccg gagaaattgg aatccattat tgacttcgga      1620
     ctggctgtgc gcagcctctg tgatcacctg gaagctgctg gacaacaaga acatctctcc      1680
     aacccgacgt tgctgatgga aatggtkgaa aaacttcccg cgcacaccaa actacagtgg      1740
     gctgattaca tgcagcagca tcctttggtc aacttgaaga cattcggaga tttcatgctt      1800
     cgagtcgtca catcagtcag cagagtaaca atgtatgtcg gaggcagcag cagcgaccag      1860
     cataaaacga agcagaaagg agtagtgtac gctcatacca gtgaggcaga actaatgcac      1920
     gagccggtgt ttgaacagaa tcgagtgtgt ttctgttgta agaaaccagg acatcgtgtt      1980
     gcagagtgtt ccatattcaa agcgtattct gtagacgacc ggtggaagtt tgttcaatct      2040
     aagggattat gccgcagctg tctcaactca cacggaaggc gaagctgcaa aaatgcaacg      2100
     caatgcgtat ttgaaggatg ccaataccgc catcatccgc tgctacactc caatcgatcc      2160
     gataatgtca gtgagcggtc tactcaagga ttgtcaacag tgcaaaacca cattcatcgg      2220
     caattcaaac aagctttgtt attccgcatt atacctgtag tcgtttccgg accgcgagcc      2280
     accatcgaaa ccttcgcctt cctagatgat ggctcggatc tatccctcat agaaagtagc      2340
     ctggtggacc agctgggcat tgatggctgg aagaaaccct tgtgccttaa gtggacaggg      2400
     aacgtcacca ggatagagtc agagtcaaaa cacgttcgag tcatgatcag aggaatgaac      2460
     agccagcaac agttctcgct caatgatatc cgtaccgttm aggaactcac actcccagaa      2520
     caaagtctga actacgatga actttcgcaa cgctaccgct atctacaagg tttaccagtg      2580
     gacagctacg ataaagcggt acctcgtttg ctgataggcg tcaacaacgc gaatcttacg      2640
     gtcccactcc aagtgaggga aggcagaaag gatgagccta ttgcagtgag aacccgcttg      2700
     ggatggtgta ttttcggtgg tcgtggtaac gtagccgctc attcgctaaa ttaccatgcc      2760
     tgcgaatgtt caaatgatca agatctgcac aatacagtga aagagtattt cgcgatggat      2820
     gatgccggag ttaagtcacc agttgtgcta gaatccgtag atgacaatcg agcaaggaaa      2880
     ataatggagc aaactactgt ccgtagaggt gatcggtttg aaacgggcct aatatggaag      2940
     tacgacgtta tagagtttcc ggacagcttt aatatggcgg tcaaacgttt ggagtgttta      3000
     gagcgcagga tgatgcgaga tcctactcta gcgacgaacc tgaaaaatca gattatggag      3060
     tatcagctca aaggttatgc gcatcgagcg acggaggaag aactttcgca agcggatccg      3120
     aagcgagttt ggtatctacc actaggagcg gtaacgaacc ctagaaagcc aggaaaagtg      3180
     cgactaattt gggacgcggc tgctaaagta gacggaatat ccttaaactc tatgctgctt      3240
     aaaggtccag accagttgac atccctccct gctgttcttt cacgatttcg ccagtaccca      3300
     gtgggcgttt cagcagatat aaaagaaatg tttcaccaac ttctaattcg accggctgac      3360
     cggcattctc agcgcttcgt gtttcggaac aatccagcag atccggtgga catttactta      3420
     atggatgtgg cgacctttgg atctacgtgc tcgccggcct cggcacagtt tgtaaaaaac      3480
     cagaacgccg aagcattcgt taatatattc ccacgagcag tcgaaggaat tgtagataat      3540
     cactacgtag acgattatct cgatagcttt gaaaacgaag acgaggcaga acgagtatca      3600
     cgagaagtcc gatcaataca tcagaaagga ggtttcttgc tcagaaactg gttgtccaat      3660
     agcaccatag ttctacgtgg actcaatgag gaggaacaaa aggatacgaa gtgtctctat      3720
     ttgagtggat tggagaacag cgatcgtgtt ctaggaatgt tatggaaaac gactgaagac      3780
     gagctatggt ttccaatgat catgaaggaa gaagtacaaa aggtgataga aagcggtgag      3840
     cggcctacta aacgacaaat gttaaagtgc ttgatgggaa tattcgatcc gttgggactt      3900
     cttagcgtat ttctagttca cggaaaaatt ctgctccagg atgtatggcg caccgggttg      3960
     caatgggacg aaaaggttcc agagagaatt ttcgagcgtt ggataagatg gatcagctta      4020
     tttcctgaaa tcggaaacct acgtattccc cgatgctatt tcaagggagc cagcgcacaa      4080
     atgtacggac gacttcaact ccacatcttc gtcgacgcta gtgaagctgc gttttccgct      4140
     gtagcatact ttagagtggt caatgcagaa ggaaatccgg agtgctcaat agttgcsgca      4200
     aaaacaaagg tcgcacctct gaagcctctt tcgattcctc gactggagct gcaagcagca      4260
     gttttgggta gccgactgat gtcatttgtg cagaaaagtc accgtattga agtcaaacag      4320
     cggtttatgt ggagtgattc cgccactgta ttggcctggt tgcggtctga ccatcgccgc      4380
     tacaaacagt atgtggcatg ccgcgtaggg gaactgttat caaccacaga cgtggaagaa      4440
     tggcgatggg ttcccactaa gctgaaccca gcagacgctg caacgaaatg gggaaagaat      4500
     gcgtgcccga aggataacga tgagtggttt aaaggcccga aatttctgcg tctttccgaa      4560
     gaggagtggc cgaaacaaac gtcatttcca attcaatctg aggaagaact wcggccctgt      4620
     ttcatggtac aagaggtcat cattcctgag agcgttgtag acttcagtcg gttctcaaaa      4680
     tggcgaaaac tactaggcgc aatagcgtat atgcatcgat ttgtcgacaa ctgtaggcgc      4740
     aaacatcgag gagaagcgca aaattcaata tacttgagcc ctgaggaact gaggagagcg      4800
     aagaacactg tgatgcgggc tgtgcaatgg caggagttcc cagatgaaat gattacgctt      4860
     tcgcggggcc taaccggatt acctaaaaca agcagcttgt accagttgac gccaacgatt      4920
     gacgaatgcg gagtgctacg cgtcgacggt agaattggtg ccgcaccgaa taccgcattt      4980
     gactcaatgt tccctgttat tcttcctaga aaacatttgg tgacaaatct agtaacggag      5040
     gatttccatc gagccttcca tcatgggaat tccgaaacag tagtcaacga aatcagacaa      5100
     ttctaccaca tatctcgact aagaacggtg gtgaaacaaa tcgctaaagc gtgtcaatgg      5160
     tgtaaggtga ataaagcaac tccgaagatc ccgcgaatgg cgccgctgcc tgtagctcgt      5220
     ctgtcctcgt attcacggcc cttcacgtac actggcatcg acttcttcgg accactattg      5280
     gtgaaagtag gtaggagtgc tgcgaaacgc tggatctgta tcttcacctg tctcaccata      5340
     cgagccgttc atgttgaggt ggctcacagt ctttccacgt cttcgtgcat gagctgtatt      5400
     agaagatttg tttgtcgtcg aggagcaccg gcggaaatct acacggataa tggtaccaac      5460
     ttccaaggag ctgaacgcct cctaaaagaa cagctcctga agatgcacga cgaattagct      5520
     gcgacgtaca ctaatacaga tactaaatgg atattcattc cacctggcgc acctcacatg      5580
     ggcggagcgt gggaaagaat ggtgcgctcg ataaagtcgg ccatggaaac tgcgtacaac      5640
     agtgatcgga agctagacga cgaaggacta gcaacgttag tcgttgaagc cgagggaata      5700
     gtcaacagcc gaccgcttac ttacctgccc ttagacgctg ctgaaggaga agcactcact      5760
     ccaaatcatt tccttcttgg aagctctaga ggtgttcgac agccggcaat accattcaat      5820
     gatccagctg tagctgtaaa gaattcctgg aacctgatac aacatcaact tgacgttttc      5880
     tggaagcgtt ggattcgaga gtatctcccg atgttgacca agcgaatgaa gtggttcggt      5940
     gaagtaacgc ccatagctga aggagatcta gttctaatag tggatgatgg ccgaaggaac      6000
     ggctggattc gcggaagagt taaggacgtt cttgttgcag cagacggcag gatacgccaa      6060
     gctacagttc aaactgcgag ggggatattg cgtagaccgg tatcgaagtt ggccgtgttg      6120
     gaggtagagt taggtggtaa aactggaacc gatggccagt gttacggggg ggagga          6176
//
ID   BEL-612_AA-LTR repbase;    DNA;    INV; 549 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-612_AA_;
KW   Pao_Bel_Ele159; BEL-612_AA-I; BEL-612_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-549
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 549 BP; 196 A; 104 C; 98 G; 151 T; 0 other;
     tgttgctgcc agcactgccc cgcagtgttg atgcggctga acgatgatga tgagcagcaa        60
     tgtcatccat gcaaagatat gcggtatagc aagtcgtgac aaagagaaag aaagttgaga       120
     ctgttctttg ttactcttcg aggcagcacc ttgatcaacg taaattagtt aaaattgaac       180
     tatcctagtt tctaaaattt gtccctatat ttacagtgaa ttcaaaaatt aaatctaact       240
     taaaactagc gctatcacag ttagtttatc acagttcatt atcacagaaa gtaagtggtt       300
     gaattacata aaattactaa aactaaccta aatctaaatc acaggttggt agccaaacag       360
     acaataggcg aacacagaac aatttgtaac aagctcaaac cgaacaattg taagttaccc       420
     tcgtatgtat tttcacaact aaactaatta aaataaacat tgcagcttaa agctgatttc       480
     gcaccagaat ctagagtttg cgaactgctt aaaagagtcg gaaaagagct cccgtttgtt       540
     ctaggaaca                                                               549
//
ID   BEL-613_AA-I repbase;    DNA;    INV; 5638 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-613_AA_;
KW   BEL-613_AA-LTR; Pao_Bel_Ele41; BEL-613_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5638
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4691-5251] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..1382
FT                 /product="BEL-613_AA-I_2p"
FT                 /translation="MLKNLVSQWREARRQRKRKRRLVIKAVVPDVNVPHSR
FT                 RNDELPLDNTSKPRVKNAPTESGIVPDLRHQLASMDFNRAAENAVPNEEPS
FT                 SHASNFRTHHESRSQDPPRNRPVENLLETELNDSHLHTRGGRQYVEEYDGP
FT                 TNRQLAARQVMGKDLPPFSGRPEEWPLWFSNFQRSTTTCGFSDDENLIRLQ
FT                 RCLKGEALETVRGKLLCPSSVPHVIRTLEMRYGRPSTLIRVMTERIRQLPS
FT                 PRMNDLNSIIEFGLAVNSLVEHLQNSAQVSHLNNPSLLHDLVTKLPVDYRL
FT                 KWAAYKSSLREPNLTAFGNFMSTMVELAYEVADDVPSEKSKPKERAFLHAH
FT                 SESPSSK"
FT   CDS           1550..5638
FT                 /product="BEL-613_AA-I_1p"
FT                 /translation="MALKTWNGCEFGDCRLRHHTLLHSISGSSNVAILNNH
FT                 MGALQSINGPLFRIMPVTLYGNGCQINVFAFIDEGSQLTLLEDVVAKQLGI
FT                 DGPTEPLGLQWTGNIKRNEAKSQRISMEVSGTGSTKRFELSDARTVGGLLL
FT                 PSQSMRYEELAKRYPHLRGLPLQDYANVSPKILIGLDNLKLTVPLKVREGG
FT                 WKDPIAARSRLGWSIYGCSQAPASSVICGFHFGGWTDPDRELNDLVRNFFS
FT                 IEDAGVTSPQKILESEEDKRARMLLETTTRRVATGFETGLLWKTDDVHFPE
FT                 SFGMAARRLRALESKLSKDPAMYENVRLQIHQYLEKGYAHIASEQELAQVP
FT                 PDQTWYLPLGVHRNPKKPEKIRLTWDGRASVQGVSFNSALLKGPDMLSSLP
FT                 SVLCHFRQYRYALTGDIKEMFHRIRIREEDRQFQRFLWRNAPHDPPKIYVM
FT                 DVATFGSTSSPCSAQYVKNLNASEFTEKCPRAVYAIHHYHYVDDYLDSFSS
FT                 RDEAITVGRQVKMIHSEGGFELRNFLSNDAQISARVGEESTENDKSLSLDG
FT                 AESVLGMRWVPICDCFTYDLTMRSDLADIMKDGRIPTKREVLRVVMSLFDP
FT                 LGLIAFYVVHGKILMQEIWVSGVHWDDPISQQLYDRWIQWCRLLPQLSSIR
FT                 IPRYYFPKAESEVYRSLQVHVFVDASESAYSSVAYFRVESQHGPLVALVGA
FT                 KTKVAPLKMLTIPRLELQAAVLGTRLLNNVISMHGLPVVQRFLWTDSATVL
FT                 AWLHSEQRRYHQYVGFRIGEILSTTEVGEWRWIPSKLNVADVATKWGSGPQ
FT                 IDSTNRWFTGPEFLQLPETHWPQKIKLQLSTDEELRSCNVHLPAMIQFVDV
FT                 ARFSKWERLLRSVAYVHRFVNNIRRSQRGELLEVGALIHDELKSAEESLWR
FT                 QAQREFYGAEIELLQRTRGRLDACHVGVPKSSNIYKLSPFIDADGILRKRS
FT                 RLGAAFWLPYDAKNPIILPREHRISLLLTDFFHRRFRHANRETIVNEMRQR
FT                 YEISKLRSLIARVSRDCMECRVHHTVPRSPPMAPLPKVRLTPYVRPFTFVG
FT                 IDYFGPVLVKVGRSNSKRWIALFTCLTIRAVHLEVVHNLTTESCVMAVRRF
FT                 VSRRGSPAEIYSDNGTNFHGADNQLKREIEERNYRMATVFTNSTTRWRFNP
FT                 PGAPHMGGVWERMVRSVKAAIGTILETQRRPDDEVLETVMIDAEAMINCRP
FT                 LTYIPLEYAEQEALTPNHFLLGSSSGIKQLPVEPVDFRSTLRSGWKLAQHL
FT                 TDGFWRRWLKEYLPVISRRSKWFDEVRDLEVGDLVLVVEEAVRNQWLRGKV
FT                 ERVVCGRDGRTRQAWVRTKNGVLRRPVVKLALLDVMDERKPVQGNALRAGE
FT                 "
XX
SQ   Sequence 5638 BP; 1553 A; 1258 C; 1456 G; 1369 T; 2 other;
     aactttagaa tttttcacat ccgttaacct cgaaaccatg gcggaaggtg ggaatgattc        60
     tcaggcctat aggagctgtg ccgcttgtga tcgaccggat tcattcgatg acatggttgc       120
     gtgcgattcg tgccagatat ggtgtcacta ttcgtgcgca aaagtgggtg ccgatgtcaa       180
     gaatcgggag tggtactgct cgacctgtga acccctgatg agagccaaaa ctgtacagat       240
     tcccaagcaa tccaaggaaa tgtggatcac ccagtccaag acaggtgacc gagcgtcgaa       300
     tgagaattta aaactcacgg ttccagagaa ggatgctaaa aaatctggta agtcagtggc       360
     gggaagcaag acgtcaaaga aaacgaaaaa gacgattggt gataaaagcc gtagttcccg       420
     atgtgaacgt accacattct cgaagaaatg acgaactacc cctcgataat acaagcaagc       480
     cccgggtcaa aaacgcacct acggaatctg gaatagttcc ggatttgagg catcagttgg       540
     cgagtatgga ttttaataga gccgcagaaa atgctgttcc gaatgaagag cccagttccc       600
     atgcttcaaa tttccgtaca catcacgaat ctcgctctca ggatccacct agaaatcgtc       660
     ctgttgaaaa ccttctggaa actgaactga acgattctca tttgcatacc aggggtggtc       720
     gtcaatatgt tgaggagtat gacggaccga cgaaccggca gttggccgca cgccaagtaa       780
     tgggtaaaga ccttccacca ttttcgggta gaccagagga gtggccatta tggttcagca       840
     attttcagcg ttcgactaca acttgcggct tctcagatga tgagaacctc atcaggctgc       900
     agcgctgctt gaaaggcgaa gcattggaaa cagtgcgagg taaattgctt tgccccagta       960
     gtgtacctca tgtcatcagg actttggaaa tgcggtatgg acgtcccagc acactgatac      1020
     gtgtgatgac agagcgtatt cgtcagctgc catcccctag aatgaatgat ctgaacagta      1080
     tcattgaatt cggattagca gtcaatagcc tggtagagca tctacagaat tccgcacagg      1140
     tstcccattt gaacaatccg tccctgctcc acgacctagt taccaagcta cccgtggatt      1200
     atcgtctaaa gtgggcggcg tacaagagtt cactgcgtga accaaatctc actgcatttg      1260
     gaaactttat gtccactatg gtggaattag catacgaggt ggcggatgat gttccttccg      1320
     aaaaatcgaa gcccaaggag cgtgcttttc tacatgcgca ttctgaatca ccatcaagca      1380
     aataattttc gcccaacgag cacgtttcga agaaatgttg cgtagtttgc catgaagaag      1440
     gacacaaggt cggaggctgt cccacattca agcgaatgga catggacgaa aggtacaaag      1500
     tggtgcaaca gaacggatta tgtagaacgt gtttaaatca gcatgggcga tggccttgaa      1560
     aacgtggaat gggtgtgagt tcggagactg taggctgaga caccataccc tgctacattc      1620
     catcagcggt tcgtcaaacg tggccatttt gaataatcat atgggagcac ttcaatcgat      1680
     caatggtcca ctcttcagaa ttatgccagt tactctgtat ggaaacggat gccagattaa      1740
     cgtgttcgcg ttcatagacg aagggtctca gctgactcta ctagaggatg tcgttgccaa      1800
     gcagctagga atcgatggtc ccacggaacc cctgggccta caatggacag gaaacatcaa      1860
     gaggaacgaa gcaaaatccc agcgaatttc tatggaagtt tcgggaacag gatcaaccaa      1920
     acgcttcgaa ctgtcagatg ctcgaactgt aggtggactt ttactgccat cgcagtctat      1980
     gcggtatgag gaactagcga agaggtatcc acatttaaga ggtctaccgc tgcaagatta      2040
     tgcgaacgta tcaccaaaga tcctcatcgg tcttgacaat ttgaaactca cagtaccact      2100
     aaaagtcaga gaaggtggat ggaaagaccc aatcgcagcc agaagccgtc ttgggtggag      2160
     tatctacggt tgttcgcagg caccggcktc gtcagtaatt tgtgggtttc attttggagg      2220
     atggaccgat ccggatcgag aactgaatga tctcgtgaga aacttcttta gcattgagga      2280
     tgcgggcgtc acaagccccc agaagatctt ggaatccgag gaagataaaa gagccaggat      2340
     gttattggaa acaaccacac gtagggttgc aacggggttc gagacgggtc tactttggaa      2400
     gacggatgat gtgcattttc ctgaaagttt tggtatggct gctcgacgac ttcgtgcact      2460
     cgaaagtaag ctaagcaagg atcctgcaat gtacgagaac gttcggcttc aaatacacca      2520
     atatctcgaa aagggttacg cccatatagc ttccgaacaa gaattggccc aggtaccgcc      2580
     ggatcaaacg tggtatctgc cattgggtgt ccataggaac ccaaagaagc cggaaaagat      2640
     tcgtctgact tgggatggca gagcatcggt ccaaggagtt tccttcaact ctgcgcttct      2700
     caaaggaccg gatatgcttt cgtcgcttcc aagtgtactt tgccattttc gtcaataccg      2760
     ctacgcacta acaggtgaca tcaaagagat gttccaccgc atacgaatcc gtgaagaaga      2820
     tcgtcagttt caacgatttt tgtggagaaa cgctccccac gaccctccca agatttacgt      2880
     catggacgta gcgacatttg ggtcgaccag ctctccgtgc tcggcccagt acgtaaaaaa      2940
     tttgaatgct agtgagttca cggaaaagtg tccacgtgct gtgtacgcaa tccaccatta      3000
     ccattatgtg gatgactatt tggatagttt tagttcacgc gacgaagcga tcacagttgg      3060
     caggcaggtt aagatgatac acagcgaagg tggtttcgag ctcagaaatt tcctgtcgaa      3120
     tgatgcgcaa atatctgctc gggttggaga ggaatcaaca gagaacgaca aatcgctgtc      3180
     tttggatgga gctgagtctg tcctcggcat gagatgggtt cctatctgtg actgctttac      3240
     atacgacctc acaatgcgca gcgacttagc ggacatcatg aaggacggtc gtatcccaac      3300
     aaagcgagag gttctgagag tggtcatgag ccttttcgat ccactaggat taatagcctt      3360
     ctacgttgtg cacggaaaaa tcctcatgca ggaaatttgg gtttctggtg tacactggga      3420
     tgacccaatc agtcaacagc tgtacgatag atggattcaa tggtgcagac ttttgccaca      3480
     gttaagctcc attcgaatac cgcgctacta cttcccaaaa gcagaatcgg aggtgtatcg      3540
     atcactgcaa gtacacgttt tcgttgatgc tagtgagtcg gcatattcca gcgtggcata      3600
     cttcagagtg gaatctcagc acggtccact agttgcactt gtgggtgcaa agaccaaagt      3660
     ggcaccgcta aaaatgttga caataccgcg gttggaactt caagccgcag tattaggaac      3720
     tcgtctgcta aataacgtta tttcgatgca cggtttgcca gttgtacaga gatttctttg      3780
     gaccgactca gcgacggttc tagcttggct gcattcagag cagcgtcgat atcatcagta      3840
     tgtgggattt cgaattgggg agatactgtc gaccacagaa gtaggagagt ggagatggat      3900
     tccctcgaaa ctgaatgtag cggatgttgc caccaaatgg ggttctggac cacaaatcga      3960
     ttcgaccaat cgatggttta ccggacccga atttcttcaa ctgcctgaaa ctcattggcc      4020
     gcaaaagatc aaactacaac tttctacgga tgaagaacta cgttcatgta atgtacacct      4080
     tcctgcaatg attcagttcg tagatgtagc tcgcttcagc aaatgggaaa ggcttctccg      4140
     ttctgtggcg tatgttcatc gtttcgtgaa taacattcga cgatctcaaa gaggagaatt      4200
     actggaggtt ggtgctttga tacacgacga gctgaagagt gcagaagaat ctttgtggcg      4260
     acaagcgcag cgggaattct acggtgcgga aattgagcta cttcaaagga ctagaggacg      4320
     cctagacgct tgtcatgttg gtgttccgaa atcgagcaac atctataaac tatcgccgtt      4380
     catagacgca gacggtatac tacgcaagcg aagtcgtctc ggtgcagctt tttggttacc      4440
     atatgatgct aaaaacccta taattcttcc tcgtgagcac aggataagcc ttctgctaac      4500
     tgattttttc caccgacggt tccgccatgc taatcgcgaa acaatcgtca atgagatgag      4560
     acaacggtat gaaatttcga aactacgttc acttatcgca agagtatccc gcgattgtat      4620
     ggaatgtcgc gttcatcaca cagttcctcg ttctccacca atggctccat tacccaaagt      4680
     gaggcttaca ccatatgtac gacccttcac atttgtgggg atcgattatt tcggaccagt      4740
     attggtgaaa gtcggtcgaa gtaattcaaa gcgatggata gcgttattca cctgtttgac      4800
     catccgggcc gtacatttag aggtggtgca caacttgacg acagagtctt gtgtaatggc      4860
     agtgcgacga tttgtctccc ggagaggctc tccggcagaa atatattccg ataacgggac      4920
     aaacttccat ggggcagata accagttgaa acgtgaaatc gaggaacgca attaccgtat      4980
     ggcaacggtt tttaccaatt ctacaacacg ttggcggttc aacccacccg gggctccaca      5040
     tatgggtgga gtctgggaac ggatggtccg ttctgtgaaa gcagcgattg ggactattct      5100
     ggagactcag cgccgaccag atgacgaagt attagaaaca gtcatgattg atgctgaggc      5160
     catgatcaat tgccgtccgt tgacgtacat cccacttgaa tacgctgagc aggaggctct      5220
     tacaccaaac cacttcctgc ttggaagttc aagtggaatt aaacagttac cagtcgaacc      5280
     agtggacttc cgctcgacac taagaagtgg ctggaaactt gcccagcatt tgacagatgg      5340
     tttctggagg cgatggctga aagagtatct cccggtgatt tcacggcgtt caaagtggtt      5400
     cgacgaagta agggatttgg aagtcggaga tttggtcttg gtggtggaag aagctgtgag      5460
     aaatcaatgg ctgagaggaa aggtggaacg tgtggtatgc ggccgagatg ggcggacacg      5520
     tcaagcgtgg gtacggacaa agaacggagt gttgcgtagg ccggttgtga agctggcgtt      5580
     actcgacgtc atggatgaac gtaaaccggt ccaagggaat gctttacggg cgggggaa        5638
//
ID   BEL-613_AA-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-613_AA_;
KW   Pao_Bel_Ele41; BEL-613_AA-I; BEL-613_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-490
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 490 BP; 180 A; 83 C; 95 G; 131 T; 1 other;
     tgtgacgacg agtacccccc ggtagacacc cgtcacaaag aatcacaggg atcttacggg        60
     gcacgcgaaa gggtagaaac ttcacctttg acaatcgtcg gagatgtggc agacgtcaac       120
     gaaggatgat aagcagaawt gatagtcgga gagtttgcgt aaacaaaact tgaattcgtt       180
     attgtgcatt ataaaattac tattttctct tatatactaa tttgaacaat tgatccaagg       240
     tagggataac tattgaatga acttaaataa tgtgaactta aaacctactt atgtatacaa       300
     ttagatctaa aacctaccct acgagtacgg attgaaaact agcctaaagt aagcgagaag       360
     aaaactgaaa aattgtaagt agagtgtaaa attatatgta acagaattta agaagcaatt       420
     aaatatttca gctaaagctg ttcccaacta cttcaaccgt ttcggaattg ctgttagaat       480
     cagtttaaca                                                              490
//
ID   BEL-614_AA-I repbase;    DNA;    INV; 6961 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-614_AA_;
KW   BEL-614_AA-LTR; Pao_Bel_Ele18; BEL-614_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6961
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5938-6516] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1570..6879
FT                 /product="BEL-614_AA-I_1p"
FT                 /translation="MAPTKKSPAKKTPNLKQLMTKLKQIEAAFHDIRRFSE
FT                 RIQECTSTTQILLRLEKIDELWEKYGATLVDIESHEDFDDIEEDGDPLDKQ
FT                 RQEFSDSYYEVKSVLTDQVRERQEPASLNQSIRGDPQTSATFDHVRLPQIK
FT                 LQTFNGEIDEWLSFRDLFSSLIHWKADLPDVEKLHYLKGCLQGEPKTLIDS
FT                 LQITAANYQVAWGMLTKRYNNSKLLKKRQIQSLLTLPVIAKESASELHSLV
FT                 ENFERIVQTLDQIIQPGDYKDLLLVNLLTTRLDPSTRRSWEEFSSTKEQDT
FT                 LKELTEFLQRRVRILESLPNKTSEVNKPSNQPPSRQRNSAVKNSFNTVQAS
FT                 GGRCFACTGNHLLFQCGTFQRMSVTDRDSLLRSNSLCRNCFRPGHQAKDCQ
FT                 SKYSCRNCKGRHHTLVCFKPERDSGARAATKNSNVAKEAQQSTSTSTQSNS
FT                 NPPQVANMATTDSLVAGSVHQCSSKVLLATAVIVVEDNDGNRIPARALLDS
FT                 GSESNFITERLSQRLKVSRSKVDISVLGIGQAVTKVKQRIVVTIRSRLSEF
FT                 SRQMGFLVLPKVTANLPTANINIAGWTIPKGVKLADPSFCVSSDVDLVLGI
FT                 EAFFDFFESSRKISLGERLPSLHDSVFGWIISGGFNEEHQGLHINCNISTT
FT                 DRLEDLLARFWSMEEVDSTNNYSPEETRCETIFSSTVQRTADGRYSVALPK
FT                 DENVISRLGESKEIAFRRFLGTERRLTRDANLREQYVAFMDEYLTLGHMRK
FT                 IEYDPEPTKRCFLPHHPVVKEASTTTKVRVVFDASCKTAAGLSLNDALLVG
FT                 PVIQQDLRSIILRCCTKQILLVADVEKMFRQILVHHEDRPYQSILWRPSPL
FT                 EEVGVYELNTVTYGTKPAPFLATRTLNQLALDEGDRYPLAVKAITEDTYMD
FT                 DVITGCDNLEEAKNLQNQLDGMTKGGGFRLRKWASNCAEVLQGISEDNLAI
FT                 RPVDGINLDPDSAVKALGLTWLPGSDTFRFQFDVPPVDSDEVLTKRKVLSI
FT                 IATLFDPLGFIGATTTAAKVFMQLLWTLEGENGKKLDWDQALPLTVGESWR
FT                 KLYIQLPILNEIRIDRCVIVPNAVSIEIHCFSDASKKAYGACLYIRSQGQA
FT                 GNVKVQLLSSKSKVAPIKSQSIPRLELCGALLAAQLFDKVRQATHLQVRTT
FT                 FWVDSTCALRWIEATPSTWSIFVANRVAKIQAITEGCEWRHVAGSENPADL
FT                 ISRGVGPKEIVNNSFWWHGPSWLTADRSNWPTSDLNTIMEGEEERRRTAVV
FT                 GTASAVADFIDSFISTTNSYTTLVRRAAIWQRLIRLLRIPEEPITGFLRAE
FT                 ELQIAEFTLIRKVQEEVFSEELRALRKKESVSSKSPLRWYSPYICENGVLR
FT                 VGGRLEHSLETYETKHPMILPARHRLTKMIFEYYHLKLLHAGPQLLLATVR
FT                 QRYWPLGGRNVARQVVQQCVMCFRSKPRQVRQFMGELPSSRVTVSRPFSKT
FT                 GVDYFGPVYIRPAPRKTAVKAYGAIFVCMCTKAVHLELVSDLSTERFLQAL
FT                 RRFIARRGRCTDLYSDNGTNFVGARNQLQELFRRWKDADHQQDLARFCTNE
FT                 GINWHFNPPGSPHFGGLWEAAVRSAKHHILRVIGTNSVSHEDMFTLFAQVE
FT                 GCLNSRPLTPMSEDPDDLEPLTPAHFLVGSSLQSVPEPDWRLVPTNRLKQY
FT                 QVVQQRLQHFWDRWKREYICQLQGRSKRWSPPVKFEIGKLVVIQDKNQPPM
FT                 RWRMGRIIDVHPGTDGIIRVVTLKTTSGELKRAVENVCVLPVPANENLVE"
XX
SQ   Sequence 6961 BP; 1852 A; 1604 C; 1668 G; 1837 T; 0 other;
     taattggtcc ttcgagccgg atacctgagg accgtacctg gccaggaatc aacgcgccaa        60
     aaccaggaat ttgcgccaaa agggtttgga aatagcctta catcatccaa caattgttcc       120
     attgtgaccc acggaataaa ggagtgtcgc catcattccg cggaataatt agcggagaat       180
     cgccatagct gctggtgaca aagcccaaag ggatcctttg tcaaggactt accgcgtcgc       240
     ttgggttagc gccatttgga ttccagaaac tgctttcgga cttctggaca ttgttggaca       300
     cttcccggaa cagcttttgg tttggactgg acactaaatt cggattggat tcctgtttct       360
     ccaggtaatt atatatttag tgtatgtcct accgaagcct atacaatcgt gattctaaca       420
     ccacttttca acctctactt ggacttaacg ctcttcgacc acggaatttg gaccattgat       480
     gaccaaccgc ttctggggaa gccaatccca atcggaggtt tgcgtaatac tgcactactt       540
     ggaaccggcc atcggtatct ctggctgtga gtgaggatcg aatgcattgc atttatgtgc       600
     cactccagtc cccattttca caccacctta tcaacggttt gactgcctcc atcatcggta       660
     ccaccaaggg ctgccatcgc ccttcaattg actaaccggg ttagcagcaa tgtgctgtcg       720
     ttggtttgtt gcgagtattc atcgccacta gtgccccatc actgcgagaa ccattgctgc       780
     aaaagatcat cgaatcaaac tagcaccgat tgtggccttt gaagcatcca acccaacacg       840
     tccgactaag ggaacccaca ggaagaggag gcgccatcgt atattgccca ggttagtgaa       900
     ctagagctag atatatgtct gccgaagctt gggcaacaga gttacacatt ttaattgaat       960
     atatatcctc ttcggttgct gtggacgaat tcctaatttg aataccgagt atttcggtgt      1020
     ttcatgcctt ttgaaaattt tggactgctg gatttattgc cgggttttga gccgctgctg      1080
     gtttctccgg gtgagttgac cgcagtatat gcccggccga agccgaatac ttttgatgct      1140
     acatttggat tttccttttt tccccaacca atccctggat atcactttga gctacgacga      1200
     ctggtgacgt tgcagttgaa attcgactgc taatcaatta atttcgattc actatcgatt      1260
     ggacaatagt gaagctactg tttcctccag gtgagcgcca cagtatatgt ccagtcgaag      1320
     ctggaccatt tatgattact acatgctggt ttcctctcct cttcgttcct tccaactgta      1380
     atcgagattg tttactcctc tgatgctgac tgactggaat cgctgtgtat ttcaactaga      1440
     tttggcgaaa gtttcgttgt gaaggtcagt taatttagaa tagtgtgtgt ccgccgtagc      1500
     aaaggactct gcagaatact acatcacctc tctttctcta ccgtacaact attgtcgagt      1560
     tgaggaacga tggctccaac caagaagtcg cctgccaaga agacaccaaa tctgaagcag      1620
     ctgatgacca aactgaagca gattgaagca gcttttcacg atattcgtcg attttctgaa      1680
     aggattcagg aatgtacttc caccacccaa atcctccttc ggttggagaa aattgacgag      1740
     ctttgggaaa aatatggcgc aactctcgtg gatattgagt ctcacgagga cttcgacgat      1800
     attgaagagg acggtgaccc actagataag cagaggcaag agtttagtga tagttactat      1860
     gaagttaagt cggtcttgac agatcaggtt agggaaaggc aagaaccagc tagtttgaac      1920
     caatctatcc gcggtgatcc tcaaacgtca gccacatttg atcacgtgcg tcttccgcag      1980
     attaagctgc aaacctttaa tggggagata gatgaatggt tgagttttag ggatctgttc      2040
     tcttccttga ttcattggaa ggcagatcta cccgatgtag aaaaacttca ttacttgaag      2100
     ggatgtctac aaggagaacc aaaaactctg atagactccc tccaaatcac agctgctaat      2160
     tatcaggtcg catggggtat gttgaccaag cgttacaaca atagtaagtt attgaagaaa      2220
     cggcaaattc aatctcttct cacgttaccc gttatcgcca aggagtctgc ctctgaactg      2280
     cacagcttag ttgaaaattt cgaaaggatc gtgcaaactt tggatcagat tatacaaccg      2340
     ggtgactata aggacctttt actggtgaat ttgttgacga ctcgattgga tccatccact      2400
     cgtcgcagct gggaagagtt ctcttctact aaggaacagg acacgctgaa ggaactcacg      2460
     gaatttctcc aacgtcgagt acgcattctg gaatccctac caaacaagac ttcagaggtc      2520
     aacaagccgt ccaaccaacc tccatccagg caacggaact ctgcagtgaa gaatagcttc      2580
     aacacggttc aagcgtccgg ggggcgctgc tttgcatgta ccggaaatca cctacttttc      2640
     cagtgcggca cttttcaacg aatgtcagtg acggataggg attcgttgct acggtcgaat      2700
     tcgttgtgca ggaactgctt cagaccagga caccaagcca aggattgtca atctaagtat      2760
     tcctgtagga attgcaaagg tcgccatcac acgttagttt gttttaaacc ggaaagggac      2820
     tccggtgcaa gggcagcaac caaaaacagc aacgtagcca aggaagctca gcaatccacg      2880
     agtacttcca ctcaatcgaa ttcgaatcct ccacaagtag ctaacatggc aactaccgac      2940
     agcttggtgg caggctcagt gcaccaatgc tcgtcgaagg ttttattggc aacagcagtt      3000
     atcgtggttg aggataatga cggtaaccgc attccagctc gcgctcttct cgattcagga      3060
     tcggagagca atttcattac cgaacgtctc agccaacgtt tgaaggtttc tcggagtaag      3120
     gtagatattt cggttcttgg cattggtcag gcagtaacca aggtcaaaca aaggatcgtg      3180
     gtcacgatcc gttcccggct gtcggagttc tcacgccaga tgggttttct ggtacttccg      3240
     aaggtaacag ccaatctccc taccgctaac atcaacattg ctggctggac gattccaaag      3300
     ggagtcaaac ttgctgatcc atcgttctgc gtgtcatctg acgttgacct cgtcctgggg      3360
     atagaggcgt ttttcgactt tttcgagtct agcaggaaga tttcactggg agaacgtctt      3420
     ccatctctac acgactcagt tttcggttgg attattagtg gaggattcaa cgaagaacat      3480
     caaggcttgc atatcaactg caacatctca actactgatc gtttggagga tttactagct      3540
     cggttctggt ccatggagga ggtggattcc acaaacaact attctcccga ggaaactcgc      3600
     tgtgagacta ttttttcgag taccgtacag cgaacggcgg acggtcgcta ttccgtagca      3660
     cttcctaagg atgaaaacgt catttcacgt ttgggcgaat ctaaggagat cgcatttaga      3720
     cgttttcttg gcaccgagcg gaggctaaca agggacgcta acctccgtga acaatacgtc      3780
     gccttcatgg atgaatacct gactctaggt cacatgcgga aaatcgaata tgatccagag      3840
     ccaacaaaac gatgctttct tccgcatcat ccagtggtca aggaggcaag caccactacc      3900
     aaggtccgcg tagtgtttga cgcatcctgc aaaacggctg cgggattgtc gttgaacgat      3960
     gcgttgctgg tgggacctgt aattcaacaa gatctccgtt ccatcatcct tcgctgttgt      4020
     acaaagcaga ttcttctggt agctgatgtg gagaaaatgt ttcggcagat tttggtgcat      4080
     cacgaagata gaccatatca atcgatcctg tggcgtccgt caccattgga agaggttggt      4140
     gtgtacgagt tgaacacggt tacatatgga acgaaaccag ctccgttctt ggcgactcgt      4200
     acattaaatc aactggcctt ggatgaagga gatcgatacc cgctagcagt gaaggcaatt      4260
     acagaagaca cctacatgga tgatgtcata actggctgcg ataacttgga ggaagccaag      4320
     aatttgcaga atcaactgga tggaatgaca aagggtggcg gttttcggct caggaaatgg      4380
     gcatccaatt gtgcagaggt cctgcaaggt atttccgagg ataatttagc gattcgtcca      4440
     gttgatggta tcaatctcga tcccgattcg gcagtgaagg ctttaggatt aacctggttg      4500
     ccagggagtg acaccttccg cttccaattc gatgtccccc ctgtagattc cgacgaagtt      4560
     cttaccaaac gaaaggtcct gtcgattatc gctactctgt ttgatccgct gggtttcatc      4620
     ggcgctacaa caacagctgc aaaggtgttt atgcagcttt tgtggacttt ggaaggtgaa      4680
     aacggcaaaa aattggactg ggatcaagcg ctgcctttga cggtgggtga gtcctggaga      4740
     aaactgtata tccagctacc catccttaac gaaatacgca tagatcgatg tgtaatcgtt      4800
     cctaatgcgg tgtcaataga gatccattgt ttttcggatg cgtcaaagaa ggcatatggt      4860
     gcatgcctct acattcgtag tcaaggccaa gctggaaatg taaaggtaca actgctgtct      4920
     tcaaaatcca aggtcgctcc catcaagtcc cagtctatac cgaggttgga gctttgcggg      4980
     gcattgcttg ccgctcaact tttcgataag gttcgtcagg ctacgcatct tcaagttcgc      5040
     actactttct gggtggattc tacgtgtgct ctgcgatgga tcgaagctac tccgtcgacg      5100
     tggtcgatat tcgtcgcaaa cagggtggct aaaatccaag cgatcacgga aggttgcgaa      5160
     tggagacacg ttgcaggatc tgaaaatcca gccgatctta tatctagagg agttggaccg      5220
     aaggagattg tcaacaatag cttctggtgg cacggtccca gctggttaac agcagatcga      5280
     agtaattggc caacttcaga tttaaacaca attatggaag gcgaggaaga aagaaggcga      5340
     actgcagttg tcggaacagc atcggcagtt gcagatttca ttgatagctt tatctccaca      5400
     actaattcct acacaacatt ggtccgtcgt gctgccattt ggcagcgatt aatacgattg      5460
     cttcggatac cggaggaacc tataacagga tttctaagag cagaagagtt acagatagca      5520
     gaatttacct tgatacgaaa agtgcaggaa gaagtattct ccgaggaact tcgagctctt      5580
     cgaaagaagg aatcagtcag tagcaaatcg ccactgcgtt ggtactctcc atatatttgc      5640
     gagaatggag ttttacgagt cggcggtcga ttggaacatt cgttggagac atacgagact      5700
     aaacatccca tgattcttcc ggcacgacac cgcctaacaa aaatgatttt cgagtattac      5760
     catctcaaat tgctccacgc tggtccacaa cttctgcttg caacagtccg gcagcgctat      5820
     tggcctctag gaggaaggaa cgttgctcga caggtcgttc aacaatgcgt tatgtgtttc      5880
     aggtcgaaac caagacaagt acgacaattc atgggtgagt taccgtcatc aagggttaca      5940
     gtatctcgtc ccttttccaa aactggagtg gactactttg gcccagtcta cattcgtcca      6000
     gcaccgcgta aaactgcagt taaggcgtac ggagccattt tcgtgtgcat gtgtacaaag      6060
     gcggtgcatc tggaactggt gtctgacttg tctacagaga ggttccttca agcactccga      6120
     cgttttatcg cacgtagagg aaggtgtacc gatttgtact cggacaacgg tacaaatttc      6180
     gttggagccc gaaaccagct acaagaatta tttcgtcgat ggaaggacgc cgatcaccaa      6240
     caggatctag ctagattctg taccaatgaa gggattaatt ggcactttaa ccctccaggt      6300
     tccccacatt ttggaggatt gtgggaagct gcggttcgat cggcaaaaca ccacattctt      6360
     cgagttatcg gtacaaattc tgtttcgcat gaagatatgt ttacgctgtt tgctcaagta      6420
     gagggctgct tgaattcaag gccattgact ccaatgtctg aggatccaga tgatctagag      6480
     cctcttactc cagcacattt tttagttgga agttcccttc agtcggtccc tgaacccgat      6540
     tggcgcttag tgcctacaaa ccgcttgaag caatatcagg tggttcagca aaggcttcag      6600
     catttctggg atagatggaa gcgagaatat atctgccagc ttcaaggtag atctaagcgt      6660
     tggagtccac cggttaagtt tgaaattgga aaactggttg ttattcagga caaaaaccaa      6720
     ccaccgatgc gttggcgtat gggccgtatt attgatgtac accccggcac tgatggaatc      6780
     attagagttg taactctgaa aacaacttct ggggaattaa aacgagcagt cgaaaatgtt      6840
     tgcgtgctac cagttcctgc caatgaaaat ttggtcgagt aacccacccc gtcccatccc      6900
     taccgaagag gattttatct attttcagat gcagaaatca agatttctgg gtgggtgaga      6960
     a                                                                      6961
//
ID   BEL-614_AA-LTR repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-614_AA_;
KW   Pao_Bel_Ele18; BEL-614_AA-I; BEL-614_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-586
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 586 BP; 154 A; 129 C; 149 G; 147 T; 7 other;
     tgtctgtgag gaccacccta acacctcata cgagctgacc agacggcaga cggcagacgt        60
     agttcatatg gcttttgttc tgccaatcgc tcggctaccg gctacgttga tccacagaca       120
     tcactttcgc tttctatcga gaggccgtga cgtcaccgat gcactatgag aaggcagatc       180
     tgagcgggag aaaatagccc atgtgaatcg taggtagcgg tcaaattcac cacaggatat       240
     ttgggagaaa atcggggata tttagagcag aattgggagt gatctagcag tagaaggtag       300
     aacacggtcg aagacggtcc tgcgcgacca cggttwgwwa cwgatcgatt tgttagtgtt       360
     agttcgaata aatgtgttgt gttagatktg cgttkaatta aagagctgtg ttttcgtaaa       420
     tttgtgtttt gtgctgtgtg aatcggaaga gtcttgacca aggattaggc aggtccctca       480
     caatttggag cctaaatatc gsacgaccaa accacccagc ctactgagcg tccaatcatt       540
     accagcttta ccagccccag ctatcgaacg gttcaggtat cctaca                      586
//
ID   BEL-615_AA-I repbase;    DNA;    INV; 6183 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-615_AA_;
KW   BEL-615_AA-LTR; Pao_Bel_Ele51; BEL-615_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6183
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5212-5772] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4813..6183
FT                 /product="BEL-615_AA-I_1p"
FT                 /translation="MKVLRLTQGPPDARHEAVKKSSPLFKICPYLDEQGIL
FT                 RMRGRIAACRFASFEAKFPCILPRRHRITQLIVDWYHHHYRHANRETVVNE
FT                 LRQRFEIAKLRAVVERVEKDCMKCRIKKASVRSPLMAPLPRARLEAYIKPF
FT                 TSVGLDYFGPIPVKVGRSQVKRWVALFTCLSIRAVHLEVVHSLTTESCIMA
FT                 VRRFVARRGPPAEVYSDNGTCFHGANRELQLQMRETNEAMALTFTSAQTRW
FT                 IFNPPSAPHMGGVWERLVRSIKSATNVLLESPRNPDDETLLTILYEAECMV
FT                 NSRPLTYVPLESADDEALTPNHFIFGCSNGTKVLPTEPVDIRRTLRSSWKL
FT                 AQHIMDQFWCRWIKEFLPVITRRCKWFKECEDVKVGDLVLIVGESTRNHWI
FT                 RGRVEQVIVGKDHRVRQALVRTSTGILRRPALKLAVLDILESSKPDLDDVS
FT                 NTDLDQGLREGE"
FT   CDS           join(470..2407,2411..4072)
FT                 /product="BEL-615_AA-I_2p"
FT                 /translation="MQRRLEERKSLLEAERQLRERQLVMDKEVCARQQQIR
FT                 KESLEKKTALIRQIAESSSKGGSLGGSVTNSNDKVTKWLETAAEGPERASK
FT                 DWRASNSIRSTPPCNPHQHGERLPSPRRQTGPASLPAMHHLEATLEQLSVN
FT                 ETGLPPANAHQQQPALQEHNVNIFQQAANIGPASLRHIASPHPREHVVSNP
FT                 RENSYTEPAPRAAGGLTFPRRTPEALPQQGLQPPVQLQGVNIQARQSPLQP
FT                 QTTAAIHHRVLTSEQIAARQVLGKELPVFNGNPEDWPLFVSSFEQSTIACG
FT                 YTDAENLIRLQRCLRGHALEAVRSRLLLPTNVPYVIQTLRTLYGRPELLIR
FT                 SLLAKIQRVPPPRQDRLETLMEFGLAVQNLVDHLVGAQQENHLSNPVLLQE
FT                 LVEKLPGSLKLNWAVYKRQDVIVTLATFGSFMSELVSAASEVTMEIPVFSR
FT                 APRNEHQRSREKGFLQTHSSRPLPSGSSTTVNNGKDGQKPGKTCSICTKEG
FT                 HRVGDCTQYNLMTVEERWSVVQKKGLCRTCLNNHGKWPCKSWKGCGVSGCT
FT                 MKHHTSLHIPSAGPPSVNVSTSHFSSNSEALPLFRIQPVVLFANGLSLTVF
FT                 AFIDEGSSLTLLEADIAEQLGVCGPKEPLTLLWTGNVSREESKAQRIEEIA
FT                 SAGSQSPSHLMQTHTVNSLVLPTQTLRYQDLSARFPHLRGLPIEEYENVQP
FT                 KLLIGINNLHLSVPLKIREGAPRDPIAAKCRLGWGIYGCAPRCSPRVVPIN
FT                 FHIAAASDSDRELNEQLRDYFAVESIGTPNSSTCVLESEENRRARTIMEET
FT                 TRRTSSGFETGLLWRMDDVEFPESHSMAVRRLQSLERKLEQDSFLRDSVRQ
FT                 LIWDYERKGYAHKATMRELDSMDSNRMWFLPLGVVRNPKKPQKIRLIWDAA
FT                 AKSHGVSFNSKLLKGPDLLTPLVAVLSRFRQYPVAVCGDIREMFHQISIIP
FT                 QDRSSQCFLWRDEPTDRIQTYVMDVATFGSTCSPTSAQFIKNRNAEEFAKE
FT                 FPRAAAAIVDNHYVDDYLDSFRTVQEAIEVTNDVRLIHSRGGFELRNFSSN
FT                 SEKLLQGIGETPDRTGKALVLMRGEVESVLGMQWLPMEDLFTYTFNMRDDL
FT                 QPILANDHIPTKREVLKVVMSLFDPLGLISFYLVHGKVLIQDIWAAGCSWD
FT                 EAIGDELYAKWRQWINLFPMLQSIKIPRCYFNKPLPEDLKE"
XX
SQ   Sequence 6183 BP; 1747 A; 1442 C; 1491 G; 1500 T; 3 other;
     caaatacgga gtttgctatc gagactttgg tcgaatatcc cccacaattc ttcaagaaat        60
     tttgtttgtg ggaagcaaaa tggagagatc tcgcaccaac gatgggctca cctacacctg       120
     ccaatcctgc gatcagcctg atcaagcaga acctcgcatg atagcctgcg acaactgccg       180
     caaatggcag catctgagct gcgccggagt tgatcctact atcgaaaact acgctaatct       240
     aaaatttact tgcaatggat gcaagttgaa gatttcttcc cttcggaaaa tccctcctac       300
     ggacaggtcg acacgatcct ccgttaagaa aggagtaaac gttcctagtc acgtctcaag       360
     tgaaagatct gttctcgaag cacacctgaa agttgtggag gagcaacaac agctcgagga       420
     acaggwgttg aaagagcaga ctgagattca acagcgtgaa atagatgaga tgcaacgtcg       480
     cctcgaagaa cgtaaaagtt tgttggaagc ggaaaggcag cttagagaga gacagctggt       540
     tatggacaaa gaagtgtgtg ctcgccaaca acagattagg aaggaatccc ttgagaaaaa       600
     aaccgcgttg attcgtcaga tagctgagtc gagtagtaaa ggtggttcat tgggtggttc       660
     ggttactaat tccaatgata aagtaacgaa atggttagaa acggcagccg aggggcctga       720
     acgtgcatcc aaagactgga gggccagcaa ttcgattcgg tcaacacctc cgtgcaatcc       780
     gcatcagcat ggagaacgac tcccatcacc acgccgacag acaggtcctg cctctttacc       840
     cgctatgcat catctcgaag ctacgctaga gcaattgtcg gtgaatgaaa cgggtttacc       900
     gccggcaaac gcacatcaac agcagccagc tttacaagag cacaacgtta atatttttca       960
     acaagcagca aatattggcc cagcctccct acgtcatatt gcatcaccac accctcgaga      1020
     gcacgtcgtc tcgaatccaa gggaaaatag ctacacagag ccagcacctc gtgctgccgg      1080
     tgggttaaca ttccctcgtc gaacgccgga agcgctgcca cagcagggac ttcaaccgcc      1140
     ggttcaatta caaggagtga atattcaagc aaggcagtcg ccgctacagc cccaaacgac      1200
     tgcagcaatt catcatagag tactaacgtc agaacagatc gccgctcgac aggtgcttgg      1260
     aaaagagctt ccagttttca acggaaatcc tgaagactgg ccactcttcg tgagcagttt      1320
     cgagcaatcc acaattgctt gtggatacac ggatgctgag aatttgatac gcctccaaag      1380
     atgtttgcga ggccatgcct tagaggccgt cagaagccgc cttctgttac ccacaaatgt      1440
     gccatacgtt attcaaacgc tgcgcacgtt atacggaaga cccgagttgc tgattcgttc      1500
     cttattagcg aagattcaac gagtaccacc accccgtcaa gatcgactgg aaacgctgat      1560
     ggagtttggc cttgctgtgc aaaatctcgt cgatcatctt gttggggccc aacaagagaa      1620
     tcatctctca aacccagttc tccttcaaga gcttgtcgag aagctaccag gatcacttaa      1680
     actcaattgg gcggtctaca agagacaaga tgtaatcgtc accttagcca ccttcggaag      1740
     ctttatgtcc gaattagtat cggctgcaag tgaggtcaca atggagattc ccgtcttcag      1800
     cagagcgccg cgaaatgagc atcaaaggag tcgagaaaaa gggtttcttc aaacacattc      1860
     ctcaagaccg ctgccatcgg gttctagtac gacggtgaac aatggtaaag atggtcaaaa      1920
     accaggtaag acgtgttcca tatgcaccaa agaaggtcat cgcgttgggg actgcacaca      1980
     atacaatttg atgaccgtag aagagaggtg gtcagttgtt caaaaaaagg gtctctgtcg      2040
     gacatgtctc aataaccacg gtaaatggcc gtgcaaatct tggaaaggtt gcggcgtaag      2100
     cggatgcacc atgaaacacc acacctcgtt gcatattcca agcgctggcc cgccgtcggt      2160
     gaatgtgtcc actagtcatt tcagttccaa tagtgaagca cttcccttgt tccgaattca      2220
     acccgtggtc ctttttgcaa atgggctctc gttaaccgtc tttgccttca tcgacgaagg      2280
     ttcgtcattg actttgttag aggccgacat agccgaacaa ctaggtgtat gcggacctaa      2340
     agagcctcta acgttgctgt ggactggaaa tgtgagtcgc gaagaatcca aggctcaacg      2400
     gattgaamtc gaaattgcca gcgctggttc gcagtctcca tcgcatttaa tgcaaactca      2460
     tacagtcaat agcctggttc tcccaacaca aacattgcga tatcaagacc tgtccgctcg      2520
     attcccgcat ctgcgaggat tgcctataga agaatatgaa aatgttcaac caaagcttct      2580
     cataggaatc aataatttgc acttatcagt tccactcaaa atacgtgaag gagcgcctag      2640
     ggatcctatc gctgcgaaat gccgactcgg ttggggcatc tatggatgtg ctccacgatg      2700
     ttctcctagg gtagttccaa ttaacttcca tattgcggct gcttcggatt ccgaccggga      2760
     gctaaacgaa caacttcgag attattttgc cgtggaatca ataggaacac cgaattcttc      2820
     tacctgcgtt ttagaatcag aagagaatag gagagcgcga acaattatgg aagagacaac      2880
     tcgtcgaacg tcttctggtt ttgaaactgg acttctttgg agaatggacg acgtggagtt      2940
     cccggaaagc cactcgatgg cggtacgccg tcttcagtcg ctggagcgaa agcttgagca      3000
     ggatagtttc ttgcgggatt ctgttcgaca gttgatttgg gattacgaac ggaagggata      3060
     cgcacataag gctacaatgc gtgaattgga ttccatggat tcgaatcgta tgtggttcct      3120
     acctctgggt gtcgttagaa atccaaagaa gccacaaaaa ataaggctga tttgggatgc      3180
     tgctgccaaa tctcacggag tttccttcaa ctcaaaacta cttaaggggc cagacctatt      3240
     gactcccttg gtcgcagtat tgagtcggtt tcgtcaatat ccggtggcgg tgtgtggaga      3300
     tatccgtgag atgtttcatc agatctccat cataccccaa gaccgttcat ctcaatgttt      3360
     tctctggcgt gacgaaccaa cagaccgaat ccaaacctat gtcatggatg ttgctacatt      3420
     cgggtctact tgctccccca catctgctca gttcatcaag aatcgaaatg ctgaagaatt      3480
     tgcgaaggag ttcccccgag ctgcagctgc tatagtagac aaccactatg tggacgatta      3540
     cctggacagc ttcagaactg tccaggaagc tattgaagtg acaaacgatg tgaggttaat      3600
     ccattcccga ggtggattcg aattacgaaa tttttcttcg aattccgaga agttgcttca      3660
     aggaattggt gaaacccctg atagaacggg caaagcattg gttcttatgc gaggtgaggt      3720
     agaatcagtg cttggaatgc aatggctgcc tatggaagat ttgttcacct atacgttcaa      3780
     catgcgagac gatcttcagc cgatactggc aaatgaccac atacctacca aaagggaggt      3840
     tctaaaagtg gtcatgagtc tatttgaccc actaggtctg atctcgtttt accttgtaca      3900
     tgggaaagtt ctaatacaag atatctgggc ggctggctgt tcatgggacg aagcgatcgg      3960
     agatgaactc tacgctaagt ggcgacaatg gataaatctt tttccaatgc tgcagagcat      4020
     caaaattcca cgctgctatt tcaataagcc acttccagag gatttgaagg aatagagctt      4080
     cacgtattcg tagatgcaag ctcttcggcg tatgcatgct ctgcctactt tcgactgcct      4140
     agcgagactg gaattcaggt aaccctagtt accgcaaaaa ctaaagttgc tcccatcaaa      4200
     acgctgtcta ttccccgact tgaactgaaa gcagcagttc ttggagttcg tttaacggag      4260
     tcagttcaga gtcatcataa gttctcaatt tcacgcagga ttttctggac tgattcttca      4320
     acagtattag cttggattcg ttctgatcat cgccgatatc agaagtttgt agccgtacga      4380
     attggagaaa ttctaagttc cagtgaccag gatgagtggc gctgggtgcc ctctgaaatg      4440
     aactcagctg ataaggcaac taaatggaac ggcggtcctg acttcaatgt agacaactct      4500
     tggttccgcg gtccattgtt cttgcgaatg gaggagggac attggccgaa atttcccaaa      4560
     ccattcacca ctagggaaga attacgtcca aaccattctc actggatctc agcaccgcta      4620
     gttgacatat tcagattcag ccggtggacg agactgcacc gtatgatggc ctatgtatac      4680
     cgctttatcg gtaatctasg gcggaagaaa aatggtcagc atcttcaaaa gggaccgttg      4740
     actcaacatg aactgaaatt agctgagata ggactatgga gaattgcgca gaaggatgcc      4800
     ttttctgatg agatgaaggt tctacggttg acgcaaggac caccagatgc acggcatgaa      4860
     gcagtaaaga aatctagccc gctgttcaaa atatgtccct atctcgatga acaaggaata      4920
     ttacgaatgc gaggccgcat agctgcctgt cgcttcgcat cctttgaagc aaaatttcct      4980
     tgtatcttgc ctcgtagaca ccgtattaca cagctgatcg ttgattggta ccatcaccat      5040
     taccgtcatg caaatcgcga aacggtggta aacgagctga ggcagcgatt tgaaatagcc      5100
     aaactccgag cggtggtgga aagagttgaa aaagactgca tgaaatgtcg tataaagaag      5160
     gcgtctgtcc gttcaccatt aatggcacct ttgccacgtg caagactgga ggcgtacatc      5220
     aaaccgttta catcagttgg tctcgattat ttcggcccaa tccctgtgaa agtcggaagg      5280
     agtcaagtga aacgttgggt agcgctcttt acatgtctat ccatcagagc agttcatcta      5340
     gaggtcgtcc atagtctaac tacggaatca tgcataatgg cagtacgcag atttgtagct      5400
     cgccgaggac caccggcgga agtatacagc gacaacggaa cttgcttcca cggagcaaac      5460
     cgggagctgc agttacaaat gcgagaaacc aacgaagcaa tggcactaac ctttactagc      5520
     gctcaaacac gttggatttt taatccacca agcgcccccc acatgggtgg cgtatgggaa      5580
     cgattagttc gttcaataaa atcagccact aatgttctcc ttgaatctcc aagaaatcca      5640
     gacgatgaaa cactactgac cattttatac gaagccgaat gtatggtcaa ttcaaggcct      5700
     ctaacttacg ttcccctgga atcagcagac gacgaggcct taacgccaaa tcattttatt      5760
     tttgggtgtt ctaatgggac aaaggtgctc ccaacggaac ctgttgacat ccgtagaacg      5820
     cttcgaagta gctggaaatt ggcgcagcac attatggatc agttctggtg ccgatggatt      5880
     aaggaatttc taccagtgat aacaagacgg tgtaaatggt ttaaagaatg cgaagatgtg      5940
     aaagtcggag atcttgtttt aatagttggc gaatcaacta gaaaccattg gattcgcgga      6000
     agagtggaac aggtgatcgt cggtaaagac catagagttc gtcaggcact ggtacgtacg      6060
     tcaaccggca tactacgcag gccagcattg aagctagcag tgctggacat cttggagtct      6120
     agtaaacctg atctggatga cgtcagcaat acggatcttg accaaggttt acgggaaggg      6180
     gag                                                                    6183
//
ID   BEL-615_AA-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-615_AA_;
KW   Pao_Bel_Ele51; BEL-615_AA-I; BEL-615_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-595
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 595 BP; 218 A; 105 C; 98 G; 174 T; 0 other;
     tgttacgatg agacccctcg tagaagcggc gcctctacaa cagtgccgtc aaattcatgc        60
     aaaccgacga aacgtcaagc atccacgtca acgactgctg aactgtatgg aaaggcgtaa       120
     gagaagaatg tgatgtgctc aaaaaccaca tgaagtgaag actccaaatt attgaattat       180
     tctagtttat attgaaaatc agtgaattga aatcttttat atatatatat ttattcacac       240
     catagtttcg aaagcatata ggtaaagacc gaatcattta ttaaatctgt acaagataac       300
     ttacttctaa attttagttg tattgattgc actaataacc taaaaaggtg tcccatcatt       360
     cgctaatttg taattcctaa cgaattagtc aaatagtagg tatgatatat gaagattcaa       420
     tgaaatattg ctaaatttgg acttaaattt tagataggct tactagtaga ccggctgaag       480
     cgaaagaatc actctgtgct tgcatagatt caccaaaatt tgtgagtaaa ccaaccaaca       540
     gccaaaaact atgaactaat ctaaataaaa tttcagcttg aagcttacta tcaca            595
//
ID   BEL-616_AA-I repbase;    DNA;    INV; 5901 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-616_AA_;
KW   BEL-616_AA-LTR; Pao_Bel_Ele86; BEL-616_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5901
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4920-5498] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..5873
FT                 /product="BEL-616_AA-I_1p"
FT                 /translation="MFLRSGKVKKVLFPSTPFSTPTGEFSVLRSVREQKEE
FT                 AEQRQKEKEMAESVVALEQCCHAARSKVVRIKSAILNAEQDPEKFTHHGLK
FT                 LYLKTVDSSYEEYNNFQNRIYLTDPQRREEFEPKFVEFEELYEFVRISLCE
FT                 MIQHYEDIEKAIANEAALEREKQLLAVKFQGNAVAISDRAGSSGVPESVVP
FT                 YRMPPSLLLQQTPLPTFDGKYEHWHKFKARFCDIVDRCTQDSPATKLHYLD
FT                 KALVGEAKGAIDEQTLNDNNYDGAWRILVERYENLSMVIHGHVTRLLNLKQ
FT                 MAKESSVELRTLIDDCTKRVESLEFHKLKMDKMSEAIVITLLASKLDPSTR
FT                 RSWEASCEHGKLPVYKDTIAFLRKHCHVLERCEQNVMPIKSKIVPMKTQPS
FT                 IITSKTHTVMISKTTDGCPVCGSAHSIDACGAFKRLNVDERYMKAKQLGLC
FT                 FSCLLRGHRTVACKSGKTCPTCSKKHHALMHPEEKKPVAVEFPQPPAAEQA
FT                 TSSSHPLTAAKCTIPIEPMQPKQILLATAIVMVYDSNEVAHKCRVLLDSGA
FT                 MANFMSTRMAELLRLRKEGANVPIDGVNGMKTVVKYRVNARVASRTTGFQS
FT                 SLDYLVVPRVTGALPASKIDPHSWQIPKSVELADPHFYEPGRIDMLLGAEL
FT                 FFEVLQKGKIKLAPNLPLLQESQLGWLVSGPVSDSAVIGTVKVCQAGKSEE
FT                 TDEQLCQLLRRFWTIDEFGGDASPRPDDRCELSFQETHSRTKDGRYVVMLP
FT                 FRDNVGELGESRNQAMRRFLSLERRLEGQPELKQMYVDFISEYLALGHCRV
FT                 VTDSECDRPESVYYLPHHCVIKPDSSTTKLRVVFDASAKSSSDLSLNDVME
FT                 IGPTVQESLFNVILRFRLHKFVFTADIPKMYRQVMVHEAHRKYQRILWRED
FT                 KNQPMKELELNTVTYGTAAAPFLATRSVVQLARDEQEDFPAASEAVEKCFY
FT                 VDDVMTGADTLSDARQLQRDLIALLDRGGFQLHKWCANDEALLEDIPADAR
FT                 EKQMNFEDCEINGVIKTLGILWDPSSDEFLFHVKPIRDGSEFPTKRSVLSD
FT                 MSKLFDPHGLLAPVVLIAKLVMQQLWQQNVGWDDAIPKEQFRIWNRFRSEL
FT                 CCLNSLRIDRRITIDDTVAVELHGFADASKVAYGCCIYMRSVKSDGAAEVR
FT                 LICGKSRVAPMKELQRDIKVDATPDEMTIPRLELCAALLLAEQVDKVRETL
FT                 ALTTAKVVLWSDSKIVLNWLKQMKPNTPVFVQNRVVKIRKLFAWHTWHYIS
FT                 TQHNPADLVSRGVFPEDLMRCEEWWFGPSVIPVVEDDECGVVEPEEYAHQI
FT                 VTTLVPERDSVIPKKQLEPYEVILKYSSYRKLQRIFGYVVRFLHNCRLKGN
FT                 KTTRRSGALNSEDYTEAQKAMVTIVQLVVYKEEISCIQANQSVKGKLRNLN
FT                 PIYDDNERLLRVGGRIRNSDLPKDQKHPMILPENNHFTEVLIEALHREHLH
FT                 VGLNGLLAVVRQKFWPVNAKRTIHRVLRKCVVCFRTNPRDVQQYMGDLPSC
FT                 RVTAAQPFARTGIDFAGPFFIKVGRMRAKVKVYVCLFVCMSTKSIHLELVS
FT                 SLTTDGFLAALHRFANRRGNPSELFSDNGTNFRGADRELSELLNLLQSQVL
FT                 DDKVNEFCQPRGIKWSFNPPKAPHQGGIWEANIKCMKSHLCKTLNESYLTY
FT                 EELNTLLIQIEGVLNSRPLVQLTDDPFDYEALSPGHFLVGRELTAVAEPLY
FT                 DDLKETSLSRYQLVQKRMQHFWQRWSNEYVTGLQKRSKWYKDPTLLRTGLL
FT                 VIMKEDNMPPKTWKLGRIVETHPGKDGVVRVVTIRTSNSIYKRPTTQIAVL
FT                 PIDDCTDQAEPKEK"
XX
SQ   Sequence 5901 BP; 1588 A; 1272 C; 1665 G; 1375 T; 1 other;
     ttttggtccg atcgtgccgg atgtcggatt agtggatgga agcagtttag attctcggtt        60
     cgtgcgcgga acgagaaaga atcgacgcga gtttcggcag ttgcgacggt cgaatcgcga       120
     agtgaatccg attgcatgcg ttgcatcgga tagtgttttc cgataaacgt ggtcggaaat       180
     tgaattctgt tcccgattga gtggtcgaag aaagcttccg gttacttgcg cgttccggaa       240
     gtgtgwgctg ctagtcggac ggcagaatag aactttgaaa agtggaggtc aagcctcaac       300
     gaagaagaag agcgtgaaaa ttgtgcggta gtgagaagaa gaactaaaag aactattcgc       360
     atgtaatgtt tttgcgttct ggtaaagtga agaaagtgtt gtttccgtcg acgccatttt       420
     caaccccgac cggtgaattc agtgtgcttc gtagtgtgcg tgagcagaag gaggaagctg       480
     aacagcggca gaaagagaag gaaatggcgg aaagtgttgt tgcgttggag cagtgttgcc       540
     acgctgcaag gtcgaaagtg gtgcgaataa agtcggccat tttgaatgca gagcaggatc       600
     ctgaaaagtt cacgcatcat ggcttgaagc tgtatctgaa gacggtcgat tcttcttatg       660
     aggaatacaa caattttcag aatcgtattt acctcaccga tccacagagg agagaagaat       720
     tcgagccaaa attcgtcgaa tttgaagagc tgtacgagtt cgttcgaatt tccctctgtg       780
     agatgataca gcactacgaa gacatcgaga aggccattgc gaacgaggca gcgttggagc       840
     gagagaagca gctgctggct gtgaagtttc aaggtaatgc tgtggcaatc agtgatcgtg       900
     ctggatccag tggcgtaccg gaaagtgtcg tgccgtatag aatgccacca tcgttgttgt       960
     tgcagcaaac accattgcca acattcgacg gcaaatacga gcactggcac aagttcaagg      1020
     cgcgattttg cgatattgtc gaccggtgca cccaggattc cccggcgacg aaactccatt      1080
     atttggataa ggcgttggtc ggagaagcga agggggcaat cgatgagcag accctcaacg      1140
     ataacaacta cgacggtgca tggagaattc tggtcgaacg ttacgagaac ctctcgatgg      1200
     tgattcatgg ccacgtgaca aggttgctga acttgaagca gatggccaag gagtcgtcag      1260
     tggaactgcg aacgttgatc gacgactgta cgaagcgtgt ggagtccctg gagttccaca      1320
     agctcaagat ggacaagatg tctgaagcca tcgttatcac gttgctagcg tcgaagttgg      1380
     atccgagtac ccgaagaagc tgggaagcat cttgtgaaca cggtaagtta cctgtgtata      1440
     aggacacgat tgcattcctg cgaaagcatt gccatgttct ggagcggtgt gagcaaaatg      1500
     tcatgccaat caagagcaag atcgtgccga tgaagaccca gccatctatc attaccagta      1560
     agacgcacac tgtgatgatt tcgaagacga ccgatggatg tcccgtgtgc ggaagtgctc      1620
     attcgattga tgcatgtgga gcgttcaaaa ggttgaatgt tgacgagcgg tatatgaagg      1680
     cgaagcagct gggattatgc ttcagctgcc tgctacgagg acatcgaacg gtagcctgca      1740
     agagcggtaa aacgtgtcca acttgctcga agaaacatca tgcactgatg catccggaag      1800
     agaagaagcc tgttgcagtt gaattccctc agccacctgc ggcagagcaa gcaacgagtt      1860
     cctcccatcc actgacagca gcaaagtgca cgattccaat cgagccaatg cagccgaagc      1920
     agattttgtt ggcgacagct atcgtgatgg tgtatgattc caacgaagta gcgcataagt      1980
     gccgtgtgct gctggattcc ggagcgatgg caaacttcat gtcaaccaga atggcggaat      2040
     tgttgcgact gcgaaaggag ggtgccaacg tcccaatcga tggagtgaat gggatgaaga      2100
     ctgtcgtgaa gtacagagtg aacgctagag tggcatcaag aacaactggt ttccaatcgt      2160
     cgttggatta tctggttgtg ccccgagtga ccggtgcatt gccggcttct aagatcgacc      2220
     cacacagctg gcagattccc aagtcggtgg aactagcaga tccgcatttc tacgaaccag      2280
     gtcgcattga catgctactc ggtgcggagc tgtttttcga agtgctgcaa aaaggtaaga      2340
     tcaaattggc cccgaatcta ccattgttgc aggagagtca gcttggatgg ctcgtttctg      2400
     gaccggtgtc cgactctgcg gtgatcggaa ccgtgaaggt gtgtcaagct ggaaaatcgg      2460
     aggaaaccga cgagcaactg tgccaactgc tgcggcggtt ttggactatc gacgagtttg      2520
     gaggtgatgc gtcgccaagg ccagacgata gatgtgaact aagtttccag gagacgcaca      2580
     gtagaaccaa ggatggccgt tacgtggtaa tgctgccatt ccgcgataat gttggagagc      2640
     tcggagaatc ccggaaccaa gcgatgcgac gatttttgtc tctggagcgt cgcttagaag      2700
     gtcagccgga gttgaagcaa atgtacgttg atttcatcag cgagtatctg gcacttggcc      2760
     attgccgagt tgtgacggat tccgaatgcg ataggcctga gtctgtctac tatcttccac      2820
     accactgcgt gattaaaccg gacagctcaa ctaccaagct gagagtggtg ttcgacgctt      2880
     cggcgaagag tagttcagat ttgtcgttga acgatgtgat ggagattggg cccacagtgc      2940
     aagagtcact cttcaatgtg atattgagat ttcgcttgca taaattcgtc ttcaccgccg      3000
     acatcccgaa aatgtatcgg caggtgatgg ttcacgaggc tcatcgaaag tatcagcgaa      3060
     ttctgtggag agaagataaa aatcagccaa tgaaggagtt ggagttaaat actgttactt      3120
     acggtacagc tgcagcgcct ttcctggcga cacgatcggt tgtccagttg gctagagacg      3180
     agcaagaaga tttcccagcg gcgagcgagg cagttgagaa atgcttttac gtcgatgatg      3240
     tgatgactgg tgctgacacg cttagcgatg ctaggcagct ccagcgagat ttgatcgcac      3300
     tattggatag aggtggattc cagctccaca aatggtgtgc gaatgatgag gcgttactcg      3360
     aggacattcc agctgatgcc agggagaagc agatgaactt cgaagactgc gagatcaacg      3420
     gagtgataaa aactcttggc attctttggg atccctccag cgatgaattc ctgttccacg      3480
     tgaagccaat tagagatggc tctgaatttc ccacgaagag gtcagtgctg tccgatatgt      3540
     caaaactgtt cgatcctcat ggcttactag caccggtggt actcatcgcc aaactggtaa      3600
     tgcaacagct atggcaacag aacgtaggat gggatgatgc gattccaaag gagcaatttc      3660
     gtatatggaa ccgattcaga tccgagcttt gctgtttgaa ttccctccgg atcgatcggc      3720
     ggattactat tgacgatacg gttgctgtgg agctgcatgg atttgctgac gcttccaagg      3780
     tggcgtacgg atgttgcatc tatatgagaa gcgtgaagag tgatggtgct gcagaagttc      3840
     gactgatttg tggcaagtca cgagttgccc caatgaaaga actacaacga gacatcaagg      3900
     tggacgcaac ccctgatgag atgacgatcc cgaggctaga gttatgcgct gcgttgctgc      3960
     tggctgaaca agtggataaa gtgcgcgaaa ccttagcatt aacaaccgca aaggtggtgc      4020
     tttggtcgga ctcgaaaata gtgttgaact ggttgaaaca aatgaagcca aataccccag      4080
     tgttcgtaca aaaccgcgta gtgaaaataa gaaaactttt tgcgtggcac acgtggcact      4140
     atatttcgac tcagcacaac ccagcggatt tggtgtcacg tggtgtattc cctgaggatt      4200
     taatgcggtg tgaagaatgg tggtttggcc caagtgtgat tcctgttgtt gaagacgatg      4260
     aatgtggtgt ggtggaaccg gaagaatatg cccaccaaat tgtgacgact ttggtaccgg      4320
     aacgtgattc tgtaataccg aagaaacaac ttgagccgta cgaagtgatc ctgaagtaca      4380
     gcagttatcg aaagctgcag cgtattttcg ggtacgtggt tcgtttccta cacaactgcc      4440
     gcttgaaggg aaacaagacg acgcgcagaa gtggtgcact gaatagtgaa gactacaccg      4500
     aagcacagaa ggcgatggtg accattgtcc agctggtggt ctataaggaa gaaatcagtt      4560
     gtatccaagc gaatcaatca gtgaagggaa aactgcgcaa tttgaaccca atctacgacg      4620
     acaacgaaag gctgctgcga gttggcggtc gcataaggaa ctccgacctg ccgaaagacc      4680
     agaagcaccc gatgattttg ccggagaata accacttcac ggaggtgcta atagaagcgt      4740
     tgcatcgtga gcatcttcat gtcggtttga atggactact tgcggtggtc cgacagaaat      4800
     tttggccagt gaacgcgaag cgaactattc atcgagtcct gaggaaatgt gtagtttgct      4860
     tccggacaaa ccccagagac gtacagcagt atatgggcga tcttccgagc tgccgagtga      4920
     ctgctgccca acctttcgcc aggactggaa ttgatttcgc aggaccattc ttcattaagg      4980
     ttggacgaat gagagctaag gtgaaggtgt acgtgtgtct tttcgtatgc atgtctacca      5040
     aatccataca tctcgaactg gtgagctctt tgacgactga tggtttcctg gcagcacttc      5100
     atcgatttgc taaccgacga ggaaatccat ctgagctgtt ctctgacaac ggaactaatt      5160
     ttcggggagc agaccgagaa ctttccgaac tgttgaacct gctacagtct caggtgctgg      5220
     acgacaaagt gaacgagttc tgccagccca gaggaatcaa atggagcttc aaccctccca      5280
     aggctccaca ccagggaggt atttgggaag ctaatatcaa atgcatgaaa tcccatttgt      5340
     gcaagacact aaacgagagc tatttgacat atgaagagtt gaacacttta ttgatccaga      5400
     tagaaggtgt attgaactcg agacctcttg tgcagctgac ggatgatccc ttcgattacg      5460
     aagcgctgag cccaggacat ttcctagttg gacgggaatt gacggcggta gcagaaccgc      5520
     tgtacgatga tttgaaggag acgagcttgt cacgatacca gctggtgcaa aaacgaatgc      5580
     agcatttttg gcaacggtgg tcgaatgagt acgtgacggg tcttcagaag cgcagcaaat      5640
     ggtacaagga ccctacgttg ctgcgaactg gattgctggt gattatgaag gaggacaaca      5700
     tgccacccaa gacctggaag ttgggtcgca ttgttgaaac gcatccaggt aaggacggag      5760
     ttgtacgtgt ggttacgatc cgcactagca acagcatcta caagcgaccg acgacccaga      5820
     tcgctgtgct tcccatcgat gactgcacgg atcaagcaga gcccaaggag aagtgagacc      5880
     ttcgcctcac ccgggggagt a                                                5901
//
ID   BEL-616_AA-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-616_AA_;
KW   Pao_Bel_Ele86; BEL-616_AA-I; BEL-616_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-312
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 312 BP; 106 A; 42 C; 73 G; 91 T; 0 other;
     tgttacacta aaagtggaaa gaattattat tcaatgttcg gtttttgagt caatttttgt        60
     tagagtgtaa aacagaatca aatgtctata tttttctctg tgtgctacca gcgcagacga       120
     caggaggtgt agaaagaaag cgagggtttg tgtagatttg gcgcgatgcg aacggaagta       180
     ggaaggagaa aggaaagaag gaaatcaata aaagtagaaa attccgtcga gttaagacgt       240
     gtttgttttc gttaaataaa attcttaaaa tacagtccac ttgcttttcg tccctgaact       300
     atccgaagaa ca                                                           312
//
ID   BEL-617_AA-I repbase;    DNA;    INV; 5848 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-617_AA_;
KW   BEL-617_AA-LTR; Pao_Bel_Ele194; BEL-617_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5848
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4892-5449] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           410..5848
FT                 /product="BEL-617_AA-I_1p"
FT                 /translation="MEEERRQLEEEKALMEKERAIRRRELAAEEKFIKAKY
FT                 EVETRLAEEDGSARLSVAAGMVTGKVHDWLKENQMQLNVALKVPQNDREAK
FT                 PVESLKVPVRDHDSDSKSNPKSTIADFHPERSNLTERVERDEELEDLNPCC
FT                 RQEAHCIAGQGARSISREMGPTAEQLSARQIWPKKLPSFSGDPEDWPLFYS
FT                 SYETGNTACGFSNVENLIRLRECLRGPAREAVLTKLMFPHSVPSIMETLRR
FT                 LYGRPELLVKNLLNKVRRLETPKPERLDTLISFGMAVNQLCDHLEAANLEG
FT                 HLFNPTLLEELVEKLPATVKLEWVRFKRLFRHPSLKEFGEFMETMVADASE
FT                 VTTLVQPKSGPCKSDKAPRREKGQVFTHSSTTVESNSERLPCPICSGTDHR
FT                 VRNCEKFKQMNVESRIKAVERWQLCGVCLHDHGKWRCRTKIRCDVTGCQGR
FT                 HHPLLHRPLTSTQGAVQVHQRMQKSVLFRIIPLTLHHGTRRYDTYAFLDEG
FT                 SNMTLVETSLVRNLGIEGVPEPLELKWTSDIGRKEYSSQRADIIVTGKGPT
FT                 NSYCLNSAHTVDSLNLPSQSLSIENLHERYPYLRDIPIASYEKAVPRVLIG
FT                 LDNIELFSPLECRVGGSGEPIAVRCLLGWTIYGPVTSESATPGIVSVHRCG
FT                 CDRDQDLTEMIRKQYLLEDAGISPFTLPEPAEEKRAREILERTTVKVDGHY
FT                 ETGLLWKSDDIKLPDSRPMALSRLRSLETKLAKNPELRLNVHKQINEYIRK
FT                 GYAHKATEEELAAMNKQQVWFLPLNVVTHPRKPDKKRLVWDAAARVNGVSL
FT                 NSQLLKGPDQLVTLPSIICKFRERSIGFGGDVREMFHQLKIRPSDKRFQLF
FT                 LFRFDTTQPPDVYVMDVATFGATCSPCSALYVMRLNADACKEEFPAACVAI
FT                 KEKTYMDDYYDSLDTPEEAGVRAMQVREIHARAGFDMRNWVSNSPQVLEVL
FT                 GEEGNKLLPIAADKQASERVLGMTWEPTADVFLFSVNLREGLTDYIIGNRR
FT                 PTKRAALRCIMSFFDPLGLLSPYLVHGKIIMQDLWRSGIDWDTEIGDAEYA
FT                 KWSEWTNLLKKLDNVKIPRCYFQNIRPESLLDLQLHVFTDAGEQAYGCAAY
FT                 LRYAIGKNVKCSLVMGKSKVAPLKALSIPRMELQAALLGSRLMESICSNHS
FT                 LKITGRYLWTDSSTVLSWIRSDHRRFKPYVAHRVGEILSLTQPEQWNWIAS
FT                 QDNIADCLTKWSKETEPVSDGRWFNGPDFLYTSEECWLAKDIGPSKADEEL
FT                 RPCFVLHHMTSFKQGSIIDVSRFSKWETLLRTLALVRRFISNCQLRIKKLP
FT                 IEAVNVDERVLKSLSQSLPAIHVPLRQREYVEAENLLFRIAQAETYPDETE
FT                 ILLNNRDKACDKWLNLEKSSVLFKVSPFADEHGVLRVEGRTANAMYAAFDA
FT                 RFPIIMPKNHPLTLLLLDHYHRNYGHANRETVVNQVRQRFEIANLRTTIDK
FT                 VRKRCQLCKIRKCKPLPPRMAPLPEQRLTPYIRPFSYVGLDYLGPLEVAVG
FT                 RRREKRYVAVFTCLVVRAVHLEVAHDLTTSSCIMAIRRFVRRRGSPVEIFS
FT                 DNGTNFVGASRILADQIRRINSDCADTFTDAKTKWTFIPPGAPHMGGAWER
FT                 MVRSVKEAMRALDDGRKLDDEILLTVLAEAEGFINSRPLTYMPQESGGTEA
FT                 LTPNHFIFGNSSGAHNPIRTPVDLAEALRNSYKRSQYLSDAVWDRWLKEYF
FT                 PAVNKRSKWFCDAKPVKVGDLVYVAEGKRRTWVRGKVVELIANKDGRVRQV
FT                 IVKTASGTFKRPVVKLAVMEILSNGESRANHPEMPLDPRGGE"
XX
SQ   Sequence 5848 BP; 1713 A; 1292 C; 1489 G; 1348 T; 6 other;
     attctcaaag atgagcgagg atgccgcwac tmataattgt ggagcctgta aaaagccmga        60
     ctctgccgat gcgggcatgg tagcctgcga tgactgctcc gtctggtttc attactcctg       120
     cgcaggagta tcacctggag tagctgaacg wtcgtggaaa tgcaagacct gtctcgcacc       180
     ccttggaaca acaccactga acactggggt gagcaaaaag aacccgaaat ccgccgcagc       240
     tgggaagaag ggcgatgatg gtaaaagtat tckaagcaac gtaggatcta aaacagcaaa       300
     gaatgttcct ccaccgagat cgatcaggac cacctcgtcc aacgctaggc ttcaagcgca       360
     gttgacctta caacgcctgg aggaagaagc cttgttggaa aaacggaaga tggaagaaga       420
     gcgtaggcag ttggaagagg aaaaggcctt gatggagaag gaacgagcaa ttcgtcgcag       480
     agaactggct gccgaggaaa aatttattaa agcaaaatac gaggtggaaa cgcgtttagc       540
     tgaagaggat gggagtgctc gactgagtgt cgcagccggt atggtcacgg ggaaggtcca       600
     cgattggctc aaggaaaatc agatgcaact caacgttgca ttaaaagtcc cgcagaatga       660
     cagagaagca aaaccagttg aaagcttgaa agttcctgtg cgagatcatg attctgattc       720
     taaatcgaat ccgaaatcaa caattgccga ttttcacccg gagcgaagca accttacaga       780
     aagagtggag cgagatgaag aattggaaga tttgaatcca tgttgccgtc aggaagctca       840
     ctgtatcgca ggtcaaggtg camgaagcat ttcaagagaa atggggccca cagcggagca       900
     gctatcagca aggcaaatct ggccgaagaa gttgccgagt ttttctggag acccagaaga       960
     ttggccactg ttttatagca gttatgaaac tggaaacacc gcttgcgggt tttcaaatgt      1020
     agaaaacctg attcgacttc gagaatgtct tcgcggtccg gctagagaag cagtcttgac      1080
     aaaattaatg tttccccaca gtgtcccttc gatcatggaa acacttcgtc gtctatacgg      1140
     aaggccagaa ctactcgtaa aaaaccttct taataaagtg cggcgtttag agacacctaa      1200
     accggagagg cttgacactc taatcagttt cggtatggcc gtcaatcaac tgtgcgacca      1260
     tctagaagcg gccaacctgg agggtcactt gtttaaccca acgcttctcg aagaattagt      1320
     tgagaaatta ccagcaacag tgaaattaga gtgggtccga ttcaaaagat tgttcaggca      1380
     cccgtcgctc aaagagtttg gtgagttcat ggaaacgatg gtagcagacg ccagtgaagt      1440
     aacaacccta gtccaaccca agtcaggacc atgtaagtcg gataaagcac cacgtcgaga      1500
     aaaaggacaa gtcttcacac attcttccac aacggttgag agtaacagcg aaaggctacc      1560
     ctgtcctata tgctcaggaa cagatcaccg agttcgcaac tgcgaaaagt ttaagcaaat      1620
     gaacgtggaa agcaggataa aagcagtgga gcgatggcaa ttgtgtggag tatgtctcca      1680
     cgaccacggc aagtggaggt gccgtacaaa gatacgttgc gatgtgaccg gttgccaagg      1740
     acgacaccat ccgctactac atagaccact cacttcaacg cagggtgccg tacaagttca      1800
     ccagcgaatg caaaaatcgg tgctctttag aatcatacca ctaacactcc accatggcac      1860
     tcggcgctac gacacatatg cattcttgga tgaaggttcc aacatgacac tagtagagac      1920
     tagcttggta cgaaatttgg gcattgaagg tgtaccagaa ccgctggaat tgaaatggac      1980
     ctctgacatc gggcgaaagg aatattcatc ccaacgggca gatatcattg tcaccggtaa      2040
     agggccgaca aatagttact gtttgaactc agctcacact gttgactccc tgaatttacc      2100
     tagccagagt ttgtcgattg agaaccttca cgaacgttat ccctatcttc gtgatatacc      2160
     tatagcgtcg tacgaaaaag ctgttccaag agttctaatt ggactcgaca acatcgaatt      2220
     gttttcgcct ctggaatgcc gcgtaggagg atccggtgaa ccaatagcag ttcgatgtct      2280
     cctagggtgg acaatctacg gacctgttac gtcagaatcc gctacaccag gaatagtaag      2340
     cgttcaccga tgcggctgtg atagagatca agatctgact gaaatgatac gtaaacaata      2400
     tttgcttgaa gatgccggaa tttcgccatt tacactgccg gagcctgccg aggaaaagcg      2460
     cgcccgagaa attttggaac gtactaccgt taaggttgac gggcactatg agacaggact      2520
     cctatggaag tcggacgata taaaactgcc agatagccga ccgatggctt tgtccaggtt      2580
     acgaagtttg gagacaaagc tggcgaagaa tcctgagttg cggttaaacg ttcacaagca      2640
     aatcaatgaa tacatacgca agggctacgc tcataaagcc acagaagagg aactcgctgc      2700
     gatgaacaaa caacaggtat ggtttttacc attgaacgtg gtgacccatc ctagaaagcc      2760
     tgataagaaa cgtctagtct gggacgctgc agctcgcgtg aacggcgtct cgttaaactc      2820
     ccaacttttg aaaggcccgg atcaattggt tacactaccc tcgattattt gcaaatttcg      2880
     agaacgcagc attggattcg gaggggacgt gagagaaatg tttcaccagt tgaagataag      2940
     accctccgac aagcggtttc aactatttct cttcagattc gacactaccc aacctcctga      3000
     cgtttatgta atggatgttg cgacttttgg agcaacgtgc tcaccatgct ccgctttgta      3060
     tgtgatgagg ttgaacgctg atgcctgcaa agaagagttc cctgcagctt gtgttgccat      3120
     caaagagaag acatacatgg atgactatta cgacagcctt gatacaccgg aggaagcagg      3180
     cgtacgagct atgcaagtga gagaaatcca tgcacgtgct ggtttcgaca tgagaaattg      3240
     ggtgagcaac agtccacagg tcctcgaggt gttgggagaa gaaggaaaca agttactccc      3300
     aatcgctgca gacaagcaag cttcagagag ggtgctagga atgacctggg agcctaccgc      3360
     agacgtcttc ttgttctctg tcaatttgcg agaaggtttg actgactaca tcatagggaa      3420
     tcgacgcccg accaaaagag cagcgttacg gtgcatcatg agtttttttg accctctcgg      3480
     cctcctgtca ccatacctag ttcatgggaa aatcataatg caggatttat ggcgctctgg      3540
     catagactgg gatacagaga taggagacgc ggagtatgcc aaatggagcg aatggacaaa      3600
     tcttcttaag aaactggaca atgttaaaat cccgcggtgc tattttcaaa atatacgtcc      3660
     cgagagtctt ttagatctgc agcttcatgt gtttacagat gccggagaac aagcctacgg      3720
     atgtgctgct tatttgagat atgctattgg aaaaaacgta aaatgttcct tagttatggg      3780
     caaaagcaaa gtggcaccgc ttaaagctct ttcgatccct agaatggaac tacaggctgc      3840
     gcttctagga tcgaggctaa tggagagcat ttgttccaat cattcgttga aaattactgg      3900
     tcgatacctg tggacagact ccagcacagt gcttagttgg attcgttctg accatcgaag      3960
     atttaaacct tatgtcgctc accgcgtggg agaaattctt tctcttaccc aaccagagca      4020
     atggaattgg atcgcatcgc aagataatat tgcggattgt ctgacaaaat ggagcaagga      4080
     aacggaacct gtatcagacg gtagatggtt caacgggcca gacttccttt atacttcgga      4140
     agagtgttgg ttagcgaagg atatcggacc gtcaaaggcg gatgaagagt taagaccttg      4200
     cttcgtccta caccatatga ccagtttcaa gcagggcagt ataatcgatg ttagccgctt      4260
     ttccaaatgg gagacgttac ttcggacgct agctttggtc aggcgcttta tctccaattg      4320
     tcagctacga ataaagaagc tacctattga agctgtgaac gttgacgaaa gggtgctgaa      4380
     gtccttaagc caatcattgc ctgctataca tgtgccgtta cgccaaaggg aatatgtgga      4440
     ggccgaaaat ttgttgttca gaatcgctca agctgaaaca tatcctgatg agacagaaat      4500
     actgttgaac aaccgagaca aagcttgtga caagtggttg aacttagaaa agtcgagcgt      4560
     gttattcaaa gtatcaccgt ttgcggatga gcacggtgta ctaagagtag aaggaagaac      4620
     tgcaaatgcc atgtacgccg cattcgatgc tcgtttccca atcatcatgc ccaaaaacca      4680
     tccactaact cttttgctac tagatcacta tcatcgcaac tacggccacg cgaatagaga      4740
     aaccgtagtc aatcaggtgc gacagcggtt cgagattgct aacctacgca ccacaatcga      4800
     caaagtgagg aagagatgtc aattgtgcaa aataagaaaa tgtaagccgc taccaccgcg      4860
     gatggctcct ttgccagaac agcgtctaac accttacatc cgtcccttca gttacgtggg      4920
     gctggattat ctaggtccgt tagaagtagc agtaggaagg cgtagagaga aaagatatgt      4980
     agctgtgttc acttgtctgg ttgtccgcgc agttcacctc gaagttgccc atgatttgac      5040
     cacatcgtct tgcataatgg cgatacgtcg gtttgtcaga agaagaggtt ctccggtcga      5100
     aatattctcc gacaacggga ccaatttcgt cggcgctagt cggatattgg cggatcagat      5160
     aagaagaatc aatagcgatt gtgcggatac gttcacagac gctaagacta agtggacctt      5220
     tatccctcct ggggcacctc atatgggtgg cgcctgggag cgcatggtga gaagcgtgaa      5280
     ggaagccatg cgtgccctag acgatggaag aaaactggac gatgaaatct tgttgacagt      5340
     tttagcagaa gccgaaggtt tcataaattc acgtcctctt acctatatgc ctcaggagtc      5400
     ggggggtact gaagcactta ccccgaatca tttcattttc ggaaactcct caggggccca      5460
     caatccgata agaactccag tggacttggc tgaagctctg cgcaacagct ataagcggtc      5520
     acagtattta tctgatgctg tatgggaccg ctggttaaag gaatacttcc ctgcagtcaa      5580
     taagagatca aaatggtttt gtgacgcaaa gccggtgaaa gtcggcgatt tggtatacgt      5640
     agcggaaggc aaacgaagaa cgtgggttcg tggtaaggtg gtcgaattaa tcgccaacaa      5700
     ggacggtaga gttcgccagg tgatagtaaa gaccgcttca ggaacattca aacggccagt      5760
     agtgaaactg gcagtaatgg agattctgag taacggtgaa tccagagcta atcatcccga      5820
     gatgccactg gatccacggg gaggggaa                                         5848
//
ID   BEL-617_AA-LTR repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-617_AA_;
KW   Pao_Bel_Ele194; BEL-617_AA-I; BEL-617_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-616
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 616 BP; 204 A; 97 C; 130 G; 182 T; 3 other;
     tgttatggca acactgaaca acttcagccg tctattgtac ctgtagaaca aatgatgttc        60
     gacgttagtg agaaggagtc tgtcactgca attgccaaca aaaaggggac agagtgaata       120
     acgtgctcga cgtcgtatgg caattggatg tgtaaaagtt attggttaaa ttacgtttaa       180
     ataatatgct aacwttgtac gctaatcata tgttgmtaaa ttagctagaa gtgcgttgaa       240
     tagcagagat ttgggtaagg atactacatc tgtatcggta ctcaactata attgatccgc       300
     attcgtaggt taagagaggt tataggcata ggcaactaam catatcgacc aaatgttgga       360
     ttaaataggt caaggcaagg taaaactaca catttttatc aactatgata tattctactt       420
     caaaattata attgtagtat tcagagctca attgcgactc gccattgaag gcaatagaga       480
     agttggagtg gtacggtaga agaccatgta agcaaaataa aactctgttg gattatttac       540
     taaagcatta aatatatttt agctttgagc tgtgttgagt aactccgctg ctacatcgat       600
     ttcaccgatc cgaaca                                                       616
//
ID   BEL-618_AA-I repbase;    DNA;    INV; 5778 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-618_AA_;
KW   BEL-618_AA-LTR; Pao_Bel_Ele52; BEL-618_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5778
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4734-5342] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(471..1958,1962..5705)
FT                 /product="BEL-618_AA-I_1p"
FT                 /translation="MPDEKRLKAKELKRRNVIEALKRLDLFLSSYDPDQHQ
FT                 HELPHRLDRLEKIWSAYEIVQDEYEEMDDSDEFVQSNLAMRGKVEELYFRV
FT                 KAGLVSKVPAPQAPVAAAPPAPAAQSALSNVKLPTISLPEFDGDFNNWLTF
FT                 HDTFVSMIHSSTEISHVQKFHYLRAALKGEAARLIQSITITANNYAVAWDT
FT                 LVKRYSNKAILRKKHIRALLKHPKIPNNNVEALHKIVDEFQRHTKVLEQLG
FT                 EPVDQFSSILIELLEDKLDDASLTAWEESIAADAHPTYANMVDFLQKRARI
FT                 LETISINRPQIPASKPSAYLSAQKKPNQPRLSTNAATEVPSKSFPTCPACE
FT                 KQKHSIFDCSVFNGLDPKGRMKVVTEKKLCSNCFRSDHFARNCRSKYNCKH
FT                 CSRRHHSMIHPGPSEMEKVATEVGCENPLPGPSSVVTAVAAVPTPEAISTV
FT                 KSSNASVLLTTVVLIVVDVYGQEHIARALLDTGSQPNAMSERLCQLLHLPR
FT                 IVNVPIAGVDNTVTNAKHEVRAEIRSRVVNFSESLEFLVLRRVTSDIPSAS
FT                 FSASRWAFPENLPLADPDFNTCRKVDMIIGAAHFYSFLKEGRLRLPEQGPM
FT                 LIETVFGWIVAGKYDNPAEPSKCSAVTCHAATVAAVNEQLERFWRIEELQG
FT                 SNYSVDEQKCEDYYRETVSRDPTGRYVVRMPKHPEHERMLGTSKVSAIKRL
FT                 KWLEHRLAKDEGMRTQYHDFLREYISLGHMTPIQDEEECDLKVYYLPHHPV
FT                 IKESSSTTKVRVVFDGSARTSSGFSLNDSLLVGPVVQDELLSLVLRFRKFP
FT                 IALVADIEKMYRQVSMNPSDRPLQRILWRFDASEPIQAFELATVTYGLAPS
FT                 SFLATRTLLQLVEDEGSSFPKASTAIKKNVYVDDLISGHNSIEEAIELRKE
FT                 LETLLQKGGFRFRKWCSNSLPVLAGLPPELLGTQSSLKFDPEESIKTLGIR
FT                 WEPESDVFRFDVSVVIKEAPPTKRNILSTIAQLYDPLGLIAPVVVQAKMLM
FT                 QNLWLLALDWDDEVSPDLQHKWGQFCEQLPGLSKFRIERFAFASGFHSPEL
FT                 HCFADASEVAYGACIYVRSVATDGHVQVTLLASKSKVAPLKPLSIPRLELC
FT                 AALLASRLYEKIVGSLDMEFSGSFFWSDSTIVLQWMKAPPRTWKTFVANRI
FT                 AEIQATTVGSQWQHVSGKENPADMISRGVVVEELISSTLWKYGPVWLRQDK
FT                 STWPSQTVPDSKFSIEELELKKNVILTTQLIHPDPLFERFSSYQTLLNVVG
FT                 FCLRFLHNCRFKNQRNSASVLSVAELQSSKTALVKLVQAEAFPDEIQRLKK
FT                 GFMVSSKSSLRLLSPFLDAEGVIRVGGRLQLADTPYDVKHQIVLPGFHPFT
FT                 RLLLKHFHRKLIHGGIMMTLSVVRDEFWPLNGRKAVRSAIRSCYECSRANP
FT                 QPIQQPIGQLPIARVTANEAFACTGVDYCGPILLKPVHRKAAARKSYICVF
FT                 VCLSTKAVHLELVGDLGTSAFLMALDRFVWRRNKPQHLYSDNGTNFIGAKN
FT                 ALHKVYQMLQPGSDSDKINKHLAEDRIQWHLIPPRAPNFGGLWEAAVKVAK
FT                 IHLVRQLGSSLLTFEELTTVLVKIEGCMNSRPLQPLSSDPNDLGALTPAHF
FT                 LVRNMIRPLPEADIRTIPLNRLNQYEKLQKYSQNFWYRWRNEYLKELNQQY
FT                 SANQKRYPMNVGDIVILKDESLAPARWPLARIIDTHPGPDGVARVATLRTA
FT                 SGTLKRAVSKICPLECAMEQPAKY"
XX
SQ   Sequence 5778 BP; 1453 A; 1487 C; 1375 G; 1461 T; 2 other;
     ttttggtgcc gtgaccagga tactggtctt cccgttcccg accgcacgac gtaacctcaa        60
     tcgtttcgct gtgctgctat ccatatatat gttggctgtg tggattgctg tttgttccgg       120
     ctatttcgat taaatacaag gcctcgttaa tagaggtaca aggtgagtac ctctccaacc       180
     catttatcgt cggttttgcg gtacttctgg gtctgtttcg accgttttag tttgtgcgct       240
     gattccaaat cccaccaaag gctccggtat tatcaatcat ccggaatttc gtcgaaagat       300
     taccgctgtg catcggtgtt ccagctaatt gattttaata caaggcctcc tgagattgga       360
     ggtaccaggt gagtaccatt ccaatcgtat tacgtcccgt ttttcggtac ttcctgggtc       420
     ttttctgacc attgtagccc gactgcccga ctgcgttgga agttgaagct atgcccgatg       480
     agaagcggtt gaaggcgaag gagctgaaga ggagaaacgt catcgaggcg ctcaagcgat       540
     tggacctgtt ccttagcagc tacgaccccg atcaacatca gcatgagctg cctcatcgtt       600
     tggatcgtct ggagaagatt tggagcgcgt acgaaattgt acaggacgag tacgaagaga       660
     tggatgactc cgatgaattc gtccagagta atttagcgat gcgtggaaag gtcgaagagt       720
     tgtatttccg tgtgaaggct ggtttggtat cgaaggtacc cgccccgcaa gctccagttg       780
     ctgctgcgcc tcctgctcca gctgctcagt cggcgctttc caatgtaaaa ttgccgacga       840
     tttcgctgcc ggaatttgac ggagatttca acaattggct gacgtttcac gatacgttcg       900
     tatctatgat ccactcatca acggaaattt cccacgttca aaagttccat tacctccggg       960
     cggctttgaa aggcgaagct gccaggctga tccagtccat cacgattacc gccaataact      1020
     acgccgtcgc ttgggacacg ctggtgaagc gatattcgaa taaggctatt ctccgtaaaa      1080
     agcacatacg agccctgttg aagcatccca aaatcccgaa caacaatgtc gaagccctgc      1140
     ataaaattgt ggatgaattt caacggcaca cgaaggtcct cgagcaattg ggcgagccag      1200
     ttgatcagtt cagctcaatc ctcatcgaat tgctggaaga caagttggac gatgcatcac      1260
     tcactgcctg ggaagagtcc atagctgcgg atgctcatcc aacgtacgcc aatatggtcg      1320
     atttcttgca gaaacgtgcc cgtatactcg aaaccatttc gattaatcgc ccacaaattc      1380
     ccgcttctaa gccgtctgct tatctttccg ctcagaagaa gcccaatcag ccaagattga      1440
     gtacgaatgc ggccactgaa gtcccgtcaa aatccttccc aacctgccct gcgtgtgaga      1500
     agcagaaaca ttcaatcttc gattgctctg ttttcaacgg tctagaccct aaaggtcgaa      1560
     tgaaggtggt aacggagaag aagctttgca gcaactgttt ccggagtgac cactttgcac      1620
     gcaactgccg ctcgaaatac aattgcaagc actgttcaag gcgtcatcat tccatgattc      1680
     atcctggacc gtctgagatg gaaaaagtag caacggaagt agggtgcgaa aaccctttgc      1740
     ctggaccatc cagcgtagtg acagccgttg ccgcagtacc aacgcccgaa gccatttcaa      1800
     ctgtcaagtc atccaacgct agcgtgctct tgactacagt ggtgctcata gtcgtcgacg      1860
     tctacggcca agagcacata gcccgtgccc tgttagatac aggatcgcaa ccgaatgcaa      1920
     tgagcgagcg cttatgccag ttgctccatc ttcctcgama aatcgttaac gtccctattg      1980
     caggggttga taatactgtt accaacgcca agcacgaagt tagagcggaa atcaggtccc      2040
     gagtggtcaa cttttctgaa tcccttgagt tcttggtgtt gcggagagtt accagtgata      2100
     ttccgtccgc atcgttctct gcatcccggt gggcatttcc cgaaaaccta cctctagccg      2160
     atcccgactt caacacttgc aggaaggttg atatgatcat cggtgctgcc cacttctatt      2220
     cgtttctcaa agagggacga ttacgcctgc ccgaacaagg tccaatgctc atcgagacgg      2280
     tctttggttg gattgttgcg ggaaaatacg ataatccagc tgaaccgagc aaatgttccg      2340
     cagtaacttg ccatgcggca acggtcgctg ccgtaaacga gcaacttgaa cgtttttggc      2400
     gcatagagga gctgcagggc tcgaattatt ctgttgatga gcagaaatgc gaggattatt      2460
     atagagaaac cgtttcccgt gacccgaccg gtcgatacgt tgtacgaatg cctaaacatc      2520
     ctgagcatga gcgaatgtta ggaacatcga aagtgtctgc aattaaaagg ctgaagtggt      2580
     tagagcacag attggcgaag gatgaaggta tgaggactca ataccatgat ttcctgaggg      2640
     aatacatctc tctgggtcac atgaccccga ttcaggatga agaagagtgt gacttgaaag      2700
     tttattatct cccacaccat cccgtcatca aggagtccag ctccacaaca aaagtgagag      2760
     tggtgtttga tgggtctgct agaackagtt ccggtttttc cctcaacgat tccttgctcg      2820
     ttggaccagt agtgcaggac gaactactca gtctcgttct ccgattccgg aagttcccga      2880
     ttgcgctggt ggcggacatc gagaaaatgt atcgccaagt ctcaatgaac ccatcagatc      2940
     gtccactcca gaggatttta tggcgtttcg acgcctcaga acccattcaa gcgtttgagc      3000
     tagccactgt cacttacggc ctcgccccat cgtccttcct cgccactcgg acactgctgc      3060
     agctcgtcga agatgaaggt agctcattcc ccaaagcaag tacggccata aaaaagaacg      3120
     tctacgtgga tgatcttatc tccggccaca acagcatcga agaagccatc gagctccgca      3180
     aagagctgga gactttgcta cagaaaggcg gattccgctt ccgtaagtgg tgctccaatt      3240
     cgcttccagt tttagctggt ctaccgcccg agctgctcgg gactcagtcg tctctgaaat      3300
     ttgatcccga agaaagcatt aagaccctcg ggatacgttg ggaacccgag tcggacgttt      3360
     ttcgcttcga cgtttctgtc gtaataaagg aagcaccgcc aaccaaacga aacatcctct      3420
     ccacgatcgc tcaactttac gaccctctcg gtctaattgc tcccgtcgtc gttcaggcga      3480
     aaatgcttat gcagaacctt tggctcctgg cgctggattg ggacgacgaa gtctcccctg      3540
     atcttcagca caaatgggga cagttttgtg aacaactgcc cggcctctcc aaatttcgca      3600
     ttgaaagatt tgccttcgct tctggatttc actctccgga gctacactgt tttgcggatg      3660
     cgtccgaagt cgcatatggc gcatgtatat atgttcgctc cgtcgccact gatggacatg      3720
     tgcaagtgac tcttctggct tcgaaatcaa aagtggctcc cctaaaacca ctcagtatac      3780
     cgcgccttga gctgtgcgca gctctcctcg cttctcgtct ttacgaaaaa attgttggct      3840
     cgctagacat ggaattcagc ggaagtttct tctggtccga ttcgacaatt gtcctccaat      3900
     ggatgaaggc acccccgcga acgtggaaga cttttgtagc aaatcggatt gctgaaattc      3960
     aagctacaac cgtgggatct caatggcagc atgtttcagg aaaggaaaat cccgcagata      4020
     tgatatctcg tggggtagtt gtcgaagagc tcataagcag taccttgtgg aaatacggcc      4080
     ccgtctggct gcgccaagat aaatctacgt ggccctcgca aaccgtccca gacagcaaat      4140
     ttagcattga ggaattggag ttaaaaaaga atgtgattct aactactcag cttattcatc      4200
     ccgatccgtt gtttgagcga ttttcttcgt atcaaacgtt actgaacgta gttggattct      4260
     gtcttcgttt tcttcacaat tgccgtttca aaaaccaacg gaattccgca agcgtgctct      4320
     ccgttgccga attgcaaagt tctaagactg ccttggtgaa gctcgtccaa gcagaagcat      4380
     tccccgatga aatccagcgt ttgaagaaag gattcatggt atcaagcaaa tcttctcttc      4440
     gtttattgag cccgttccta gatgccgagg gagtgatccg tgttggtggc cggttgcagc      4500
     tggctgacac tccctacgat gtaaagcacc aaatcgtcct cccaggtttt catccgttca      4560
     cccgactgct gctgaaacat tttcatcgca agctcatcca tggtggcata atgatgaccc      4620
     tttccgttgt ccgtgatgaa ttttggccat tgaatggtcg caaggctgtt cggagtgcta      4680
     ttcggagctg ttacgaatgc agtagagcga atccacagcc tattcagcaa ccgatcggac      4740
     agctgcctat tgccagagtt accgcaaacg aagcatttgc ctgcactggg gtcgattact      4800
     gcggtcccat tttgctgaaa cccgttcacc gcaaagctgc agctcgaaaa agttacattt      4860
     gcgtttttgt atgcctaagc acaaaagccg ttcatctcga acttgtcggc gacttgggta      4920
     cgtccgcctt cctgatggct ctcgaccgtt ttgtatggag aaggaacaag ccgcaacatc      4980
     tgtactccga caacggtaca aatttcatcg gagcaaagaa tgctctacac aaggtgtacc      5040
     aaatgttaca gccaggatcc gacagcgaca aaatcaacaa gcatcttgcc gaagaccgca      5100
     tccagtggca tctgatccct ccacgagccc ccaactttgg tggcctatgg gaggccgctg      5160
     taaaggtggc aaaaatccac ctggttcgtc aactcggatc atcactgtta acgtttgagg      5220
     aattgacgac agtgttggtc aaaattgaag gctgtatgaa ttcccgaccg ttgcaaccgc      5280
     tttccagtga tccaaacgat ctgggagctc ttactcctgc acattttctt gtgcggaaca      5340
     tgattcgccc actccctgaa gccgacattc gaacgatacc cctcaacaga ctcaaccagt      5400
     acgaaaagct ccagaagtac tcacaaaatt tctggtacag gtggaggaac gagtatttga      5460
     aggaactgaa ccagcagtat tctgccaatc agaagcgtta ccctatgaat gttggcgaca      5520
     tcgtcattct gaaggatgaa tccctcgcac ctgcacgctg gccgctcgcc cgtatcatcg      5580
     atacacatcc tggccctgat ggtgtggcgc gcgtagctac actccgtaca gcttccggga      5640
     ctctgaagcg agcggtttca aagatctgcc ccttggagtg cgcaatggaa caaccagcta      5700
     agtattagta gtaactcaac atgaattcgt gaattacatt aaataatttg aaaatagatt      5760
     ttcaaaggtg gccggtaa                                                    5778
//
ID   BEL-618_AA-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-618_AA_;
KW   Pao_Bel_Ele52; BEL-618_AA-I; BEL-618_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-487
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 487 BP; 105 A; 135 C; 98 G; 148 T; 1 other;
     tgatgagtgt taaagtaatt tagttaccct attttgtaaa ctgttccaaa tgaaacccac        60
     ttttcatctt caccagccgg ccgaccacta ccgtgcgatc tattgtacga gtcgcctctc       120
     gattgtttgt catgcttccc attgaataca gaatattgtt aactgcaaac gcacgtgtat       180
     ccgcatcttg ttgctctccc gaaaattctc agttttctac tgttaattgc gccgataatt       240
     gctcgtaatt agtcgcaagt tgctccgttt aattcccgcg agtgacatca agcccgttgg       300
     ccccgaacag tgtcagtggt tgccccctgg agtccctaac gtactccccg tttttggcga       360
     ttgatgcccc gttatcggtg tgattgatgc cacctmgcta attgcccaga ttggcgattc       420
     cattagtcca cctgtgcaaa cgaatcaaag gatcctgccc gccttctgag ttgcccgtcg       480
     cccatca                                                                 487
//
ID   BEL-619_AA-I repbase;    DNA;    INV; 7217 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-619_AA_;
KW   BEL-619_AA-LTR; Pao_Bel_Ele177; BEL-619_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7217
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4390-4965] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..2638
FT                 /product="BEL-619_AA-I_3p"
FT                 /translation="MSHIKLITNKNGHCRLCTEDDKAGNMAVQCDDCDRWF
FT                 HQHCVNLEQLPSKKERWICPKCTEQEVEKQKLTQELNMLKNPVTMGQFEQL
FT                 IARLNIKNEPEQNHLSILVKRQAMMSLPRFSGTAKEWPRFKSAFESTTDEG
FT                 EFSNVENLNRLQQALEGNALKAVSHFMFEPENVPKIMERLEENFGRSNQIY
FT                 EEYLNNLMKTQGNSNNSVVEISDALDAFVAHIGIMEKPEYLKDFRLIDEIV
FT                 KKLPFNLQVQWIEVLQRNAESPTLKHLSEWLMRIAKLYRAVQVNTSQTKDK
FT                 KVRNNVHHQQPDKERKQPFEKTTYNKRSENPTQGKRLPLTCGYCKSNHTIF
FT                 NCESFNAMNAAERRQVVKEKTLCWSCLRPNHQSKNCPSARSCGIGTCKATH
FT                 NRLLHTKNTPSIESSAKPTPIVETGSENVQSINHHQDSKTIKYFQILPVTL
FT                 RNGDNIIKTYAFLDAGSSLTLLDEDTANGLGLEGRPETLKLLWTQDISKAT
FT                 NTKIVQLEINGINQKRFALKGVRTVKNLQLPMQTLDFGSMEKKYPYLKDLP
FT                 IKNYSAAKPTILIGIKHSHLLVPLQTVIGGEHEPIALRTKLGWIMFGNAVS
FT                 QIDNEYAMMIHQDDEMREMMKQHFSVEDFGVKIVNETVESVETERSKEILK
FT                 NTLKRSGDRYEVGLLWKYDKSNFPDSYGNAYNRLLSLEKTLNKQNNVELLH
FT                 WAKKTFKEYEDKGYIRKLTETEIENPGTDRVFYLPHFIVTNTNKIPPKPRL
FT                 VFDAAAKIKGVSFNSELLSGPDATSSLFGVLLRWREGMVAVTGDIKEMFHQ
FT                 VKIRPEDQQAQRLYGGIATQVKIQIRT"
FT   CDS           join(3232..4260,4264..7146)
FT                 /product="BEL-619_AA-I_1p"
FT                 /translation="MDLIKSAENLSIPRCITTEAITELELHVFVDASEDAF
FT                 AACIYSRSKTHYGFCIRLLAAKSRVSPIKPISIPRLELQGALLGTRLTNQV
FT                 KEKLRVKITDITMWSDSKTVLAWIKTEKRKYHQFVGHRIGEILDSTTKDQW
FT                 RWVPSGLNPADEGTKLVKGKSIWLDGPDFLRQPEDIWPAKSSHEPTTAEIV
FT                 AFHNEPETYSFIRENDYSSWRRLVKGLIPLKKFATWLQCKEALAKGMKYSE
FT                 WKCIENALYRKAQNDAFPDEMEALISGKPFPKTSSILGFRPFLDEFGVMRC
FT                 KGRLERANILPLATRIPIIMPQHHRLSKLLVRSYHEEYLHQEDGAVMTALH
FT                 KFWIINLKSVLKNVKNCCQKCILTRSKPIEPLMAPLPPPRVQGYVRPFTNC
FT                 GVDYFGPYKVNITRNITDKRWGVLFTCMASRAVHIEMAPKLDTDSFLLCLR
FT                 NLQNRRGKVAKLYSDNGTNFVGADAVLKSLVKEINAKMESGTAAEMEISWH
FT                 FNPPGAPHFGGAWESLVKLAKQAIREMMDKWKENVLPKPESLQAAFTQAEY
FT                 ILNSRPLTDVPINCAEDEAITPFHILTGKGGKYVPPRMPTTTKDEKEQWKL
FT                 VQFYQKYFWDRWKAEYIPRLLKRTKWQQKVKPIKVDDIVVLADQDGLPGSW
FT                 LKGRIVKVFPGKDGQVRSADIQTQRGILTRRAGKIAVLDVSNKEPSLTTAS
FT                 ENLITHNEIEDNQPKRKLVDTTFPNWGKRIKHDEDEVKSRARSLNDSHRQT
FT                 DQRKIRYTTPGTVAGVFVTAAALLSLTDALIVKPIESDGLVFDHHGTCVLK
FT                 RGIWKTKLTTNLYPEEDISLLNEIHRNISKALESMEGMVKDYTLNQTVQTI
FT                 GRHCDETIMDITQFSRPKRSKGIFGYIKDFIFGGDDVEEDIAAMRIHDDRL
FT                 FHDISDTMAKINGKTAHMGEQFNDRIFRLHQDINRLHNDARFEMIETKTLE
FT                 TTILAREMIDEIGSKYRKLRQNPLPREVQQQLKQNISASLPSGYTTLDHEL
FT                 SNDIKFAMINGSLIIIVETIVVNKDLYELFNVYAVPNSVNFSQIIIDERSI
FT                 AINHHKEYFYPEENDMVKLNATHLLITRATIKRKHDCISASIMHDITNIKC
FT                 MTQIRSSPYSHLIQLSESNKVLFYKSDNEKVVVHCNSVVSSVPYEAGIITI
FT                 GPDCRIESAYSTIYGSISGESHKPITFFKPRAQLYYHIEKPHDANANVTSE
FT                 IEPENPYLNDVITVVGTPEVIYRNSNTVIPLLVIIILGLIIGVYVYCKYFN
FT                 NKVHASNITESQSNQDVNQRRSINLLPLPMVRYRNDPVVEEAV"
XX
SQ   Sequence 7217 BP; 2591 A; 1377 C; 1479 G; 1768 T; 2 other;
     attggtggct ccagagagga aaatcgtgca tcatcaagtc atcaagttgc ctgttgcttg        60
     ttgcaaatca ggaacaccag cgcgttatca gcacgatcat cagccccaag gtgcaaagga       120
     aatttctcag ttgaagaaat aaggaagcga aatgtctcac atcaaactaa taaccaacaa       180
     aaacggacac tgccgtttat gtaccgaaga tgataaagcc ggaaatatgg ccgttcaatg       240
     cgacgattgc gatcgttggt ttcaccaaca ttgcgttaat ctggaacaac ttcctagcaa       300
     aaaggaacgt tggatttgcc caaaatgcac ggagcaagag gtggagaaac aaaaattaac       360
     gcaggaacta aatatgctga aaaatcccgt tacaatggga cagtttgagc aattgatcgc       420
     tagattgaac attaaaaacg aaccagaaca aaatcatcta agtatccttg tgaaaagaca       480
     agccatgatg agtctgcctc gtttttccgg tacggccaaa gaatggccaa gatttaaaag       540
     tgcatttgaa tccacgaccg atgaaggaga attcagtaac gttgaaaatc tgaatcgcct       600
     tcaacaagcc ctagaaggaa atgcactgaa agcagttagc cactttatgt ttgaacccga       660
     aaatgttcca aaaattatgg aacgtttgga ggagaatttt ggtcgttcaa accaaatata       720
     tgaagagtat ctcaacaact taatgaaaac tcaaggcaac tccaataatt ctgtcgttga       780
     aatatccgat gctctggatg cttttgtagc acacatcgga atcatggaaa aaccggaata       840
     tctaaaagat ttccggctca tagacgaaat cgtcaaaaaa cttccattca atttacaagt       900
     acagtggata gaagttcttc aacgaaatgc agaatcacca acattgaagc atctctctga       960
     atggctaatg agaatcgcaa aactctatcg agctgtgcag gtaaatacat cgcagacaaa      1020
     ggacaaaaaa gtaagaaaca acgtccatca tcagcagcca gataaggaga gaaaacagcc      1080
     atttgaaaag acgacgtata ataaacgatc ggaaaatcca acacaaggaa aaaggttgcc      1140
     ccttacctgc gggtattgta aaagtaatca taccatcttt aattgcgaaa gtttcaatgc      1200
     aatgaatgca gctgagaggc gacaagtggt aaaggaaaaa accttgtgtt ggtcatgcct      1260
     tcgtccaaat caccaatcca aaaattgtcc atcagcaaga agctgtggaa tcggaacctg      1320
     caaagcaaca cataatcgtt tgctccatac aaagaacact ccatctatcg aatcaagtgc      1380
     aaagccaact ccaatagtcg aaacagggtc agagaatgta caatccatta accaccacca      1440
     agattcgaaa acaatcaaat atttccaaat tcttccggtg acgttaagaa atggagataa      1500
     cattataaaa acctatgcgt tcttggatgc aggatcatcg cttacacttc ttgatgaaga      1560
     caccgcaaat ggtttaggcc tcgaaggaag gccggaaaca ttgaagttgt tatggactca      1620
     agatatatcc aaggcgacaa ataccaaaat cgttcagctt gaaattaatg gtataaatca      1680
     aaaacgattt gcattaaagg gtgtaagaac ggtgaaaaat ttacaactac ccatgcaaac      1740
     tttggatttt ggctcaatgg aaaaaaaata tccttaccta aaggatttgc caatcaaaaa      1800
     ctattctgca gcgaagccaa caattctgat cggaataaaa cacagccatt tattggtccc      1860
     attacaaacg gtaataggcg gggaacatga gccaatagcg cttagaacga agctcgggtg      1920
     gataatgttc ggtaatgctg tctcgcaaat agataacgaa tatgccatga tgatacatca      1980
     agacgacgag atgcgtgaaa tgatgaagca acatttctcg gttgaagact tcggcgtcaa      2040
     gatagtcaat gaaaccgtag agtctgtaga gaccgagcgg tccaaagaaa tattgaagaa      2100
     cacgttgaaa agatcaggcg atcgctatga agtcggatta ttgtggaaat acgacaaatc      2160
     gaattttcca gacagttacg gaaacgcata caatcgtctg ctatctttgg agaaaactct      2220
     taataagcaa aataacgttg agctcctaca ttgggctaag aaaaccttta aagaatatga      2280
     agacaaaggt tatattcgga agcttacgga aactgaaatt gaaaaccccg gaacagacag      2340
     agttttttat ctgccacatt tcatagtgac aaatacaaat aaaattccac cgaagcccag      2400
     actagttttc gacgcagccg caaagattaa aggagtttcc tttaattcag agcttctttc      2460
     tggaccagat gcaacatcat ctttgtttgg agtactatta cgatggagag aaggcatggt      2520
     agcagtcact ggagatataa aggaaatgtt tcatcaagtc aaaatcagac ctgaggatca      2580
     acaggctcaa agactctatg gagggattgc gacccaagta aaaatccaga tacgtacgtg      2640
     atgcaagtca tgactttcgg gtctacatgt tcaccagctt cagcgcaagc ggtaaaaaac      2700
     accaatgctg aattataccg agaaatctac ccggatgctg tagattccat tatagacggt      2760
     cattatgttg acgatttatt ggacagcttc aacaacgcgg tgactggcat taaagttgtt      2820
     agacaaatca cagaaataca tgaccatgca ggatttcata taagaaattt tgcttccaat      2880
     agtcctgaat taatggattt aattcctgaa aacagacgta tggtggcaaa tgttaaatca      2940
     ctcgatgaaa aggaatcaaa tgtggaaaag gttctaggca tctactggaa cactctccaa      3000
     gactcatcgg gtacaaattg aacatcaata agcttggaga agaagtgttg aaaaacatca      3060
     gagcccccac catgagagaa gtactggcat tcataatgtc aattatgatc ctttgggatt      3120
     aatcagcaac attacattca aggcaaaatt ctatatcaag aactgcacgt ggcatcacta      3180
     gaatgggatg attgtatacc agaccaactg ctggtgccat ggagagattg gatggacctg      3240
     ataaaatcag cggaaaattt gtcgatacca cgctgtatca ccacggaagc gattactgag      3300
     ctggaactac atgtatttgt agatgcttca gaagacgcat tcgccgcatg tatatactcc      3360
     agaagtaaaa ctcattacgg cttctgtatt agacttctcg cagccaaatc gagagtaagt      3420
     ccaatcaaac ctatatcgat tcccagattg gaattacaag gagcgttatt aggcacacgg      3480
     ttaacgaacc aagttaaaga aaaactgcgt gttaaaataa cagatataac aatgtggtca      3540
     gattcgaaaa ctgttctcgc ctggatcaaa acagagaaaa ggaaatatca tcaattcgta      3600
     ggacacagga taggagaaat actagattcg accacgaaag atcaatggcg ttgggtccca      3660
     tctggtctaa atcctgcaga tgaagggacg aaactagtca aaggaaaatc tatttggttg      3720
     gacggaccag atttcttaag acaaccagag gacatttggc ctgcaaagtc atcacacgaa      3780
     ccaactactg cggaaatagt tgcctttcat aacgaaccag aaacatattc gttcatcagg      3840
     gagaatgatt actcaagctg gaggagatta gtcaaaggct taattccact aaagaaattt      3900
     gcgacctggc tacagtgtaa agaagccctt gcgaaaggca tgaaatatag tgagtggaag      3960
     tgcattgaaa atgcacttta cagaaaagct caaaatgatg cttttcctga cgagatggaa      4020
     gccttaatca gtggtaaacc atttccaaaa acaagttcaa tacttggttt tcgaccattt      4080
     ctggatgaat ttggggttat gcgctgtaaa ggcagactag aaagagcaaa tatactacca      4140
     ttggccaccm gaatcccaat tatcatgccg caacatcatc ggttgtcaaa gttattggta      4200
     cgttcgtatc atgaagagta cttacatcag gaagatgggg cagtaatgac agcacttcat      4260
     camaaattct ggattatcaa cttaaaatca gtattgaaaa atgttaaaaa ttgttgccaa      4320
     aaatgtattt taaccagatc aaaaccaatt gaaccactta tggcaccatt acctccgcca      4380
     agagttcaag gatatgtgag accatttacg aactgcggtg tggattactt tggaccgtat      4440
     aaagtaaaca taactcggaa catcaccgat aagcgatggg gtgtattatt cacatgcatg      4500
     gcatcaagag cagtacacat cgagatggct cctaaattag ataccgattc ttttctgcta      4560
     tgtctacgaa acttgcaaaa ccgacgagga aaggttgcga aattgtacag tgacaatgga      4620
     acgaatttcg ttggagccga tgcagtacta aaatctctgg taaaggagat caacgcaaag      4680
     atggaaagcg gaaccgcagc tgaaatggaa atatcatggc atttcaatcc accaggagca      4740
     ccacattttg gaggtgcttg ggaaagcttg gtgaaattgg caaaacaagc tataagagag      4800
     atgatggaca aatggaagga aaacgtacta ccaaaaccag aaagtcttca agctgcattc      4860
     acgcaagcag aatacatttt gaattctcgt ccattaacag acgtaccaat taactgcgct      4920
     gaggatgaag caataacacc attccatatt ctaactggaa aaggtggaaa atatgttcca      4980
     ccacggatgc ctacaacaac aaaggatgaa aaagagcaat ggaaattagt acaattctat      5040
     caaaaatatt tctgggaccg atggaaggct gaatatattc cacggttatt gaaacgcaca      5100
     aaatggcaac aaaaggttaa accaatcaaa gtggacgata tagtagtgtt agccgatcag      5160
     gatggtcttc caggatcttg gttgaaaggt cgtattgtga aagtatttcc cggcaaggat      5220
     ggccaagttc gttctgcaga tatacaaact cagaggggaa tcctaacgag acgagccggt      5280
     aaaatagctg ttttagatgt cagcaataaa gagccatcat taacgacagc ttcggagaat      5340
     ttgattaccc ataatgagat tgaagacaat caaccaaaac gaaaacttgt tgatactacg      5400
     ttcccaaatt ggggaaaaag aataaaacac gacgaagatg aagtcaaatc aagagcaaga      5460
     tcacttaacg attcgcatcg tcaaaccgat cagcgaaaaa taaggtatac aacacctggg      5520
     accgtcgcag gagtttttgt aacagctgca gcattgcttt cacttacgga tgcgctgata      5580
     gtcaagccaa ttgaaagtga tggattagtg tttgaccatc atggaacatg tgttttgaaa      5640
     cgaggaatat ggaaaacaaa attaacaacg aatttatacc ctgaagaaga catatcgctt      5700
     ctcaacgaaa tacaccgaaa tattagtaaa gccctggaat ccatggaagg tatggtgaaa      5760
     gattatacct tgaatcaaac cgtacaaaca attggaagac actgtgacga aacaatcatg      5820
     gatataacgc agttctctag gccaaaaaga agcaaaggaa tatttggata tatcaaggat      5880
     tttattttcg gtggagacga cgtggaagaa gacattgcag ctatgcggat tcacgatgat      5940
     cgattgttcc atgacatttc tgatacgatg gcaaaaatca acggaaaaac ggcacacatg      6000
     ggtgaacagt tcaatgacag gatattccga ttgcaccagg atataaaccg tttgcataat      6060
     gatgctagat ttgaaatgat cgaaactaaa acattggaaa caactatatt agctcgtgag      6120
     atgattgacg aaattggttc caagtacagg aaattacgtc agaatccatt accacgtgag      6180
     gtgcaacagc aattgaagca aaatatatcc gcatcactac caagcggata cactacattg      6240
     gatcacgagc tatcaaatga tataaaattc gctatgatta atggatcact tatcattatt      6300
     gttgaaacca ttgttgttaa caaagatctg tacgaacttt tcaacgttta tgctgttcct      6360
     aactcagtta atttttcgca aataattatc gatgaacgca gtatcgcaat taatcaccat      6420
     aaagaatact tctatcccga agaaaacgat atggtaaaat tgaacgcaac ccatttattg      6480
     attacacgag caacaatcaa acgtaagcat gattgtatat ccgcttcaat tatgcacgat      6540
     attaccaata tcaaatgtat gacacaaata cgcagcagtc catattcaca tttgattcag      6600
     ctatcagaat caaataaggt gcttttctac aaaagcgaca acgaaaaggt ggtagtgcat      6660
     tgtaattcag ttgttagttc agttccttac gaagctggaa tcataacaat tggaccggac      6720
     tgtaggatcg aaagcgcgta cagcacaatt tacggaagca tttcaggaga atcccacaaa      6780
     ccgatcacgt tttttaaacc acgggcgcaa ctttactacc acatcgaaaa accgcacgat      6840
     gcaaatgcaa acgttacatc cgagatagaa ccggaaaatc catatttaaa cgacgtaata      6900
     actgtagttg gaactcccga agtaatatac agaaactcaa atacagtaat accgctgcta      6960
     gttatcataa tattaggatt aattattggc gtatatgttt actgcaagta ttttaataac      7020
     aaggttcatg catcaaatat tacagaaagt caatctaatc aggatgtgaa tcaaagaaga      7080
     agtattaatt tgttgccatt acccatggta agatacagga atgatccagt agtagaagaa      7140
     gcagtgtgaa tatgatagat aatttggagc tcattttttt aattcatgta actctatcga      7200
     attacggagg ccggaat                                                     7217
//
ID   BEL-619_AA-LTR repbase;    DNA;    INV; 643 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-619_AA_;
KW   Pao_Bel_Ele177; BEL-619_AA-I; BEL-619_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-643
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 643 BP; 200 A; 135 C; 110 G; 198 T; 0 other;
     tgttgcgacg ccaaacttat tttacgatcg gataggaaaa atccataaga gcaattagag        60
     atcctgcttt gtatacagtc tagaatttgc ctgccacaga taagacaaat gaaaatgttt       120
     tgtttttgtt ttgcttcgca tcattctagg gatgtaatag aatccaataa taattatgtt       180
     cgtttacgcc caatggcacc gatacatcat acttaggtaa tgcgcatcga agacaaaata       240
     tagacaaagg atgcaggcag tttaaatgac acgatgatag gaggtagcga ttaataacca       300
     tttttgtatt gttagccaaa ttcagtcggg actttctgtc gcccgccttc ctttcgttct       360
     ttccgtttac tttccattcg gtcaatagca gatactctct tttcattttt tgtacctact       420
     agatttaagg acactatata tagcatttga caataaagga aaatagctca caactcaatt       480
     cgacactcgt tcgacatgat ccgaactcca aacggttttt caaatcaata gttgctacaa       540
     accattgacc aggcctttca cactgagaag gaaccagtct ctgctagttc ttctattctt       600
     gaaaatcgcc ttaaaaaaaa ataacttcgg cctagccgaa cca                         643
//
ID   BEL-61_AA-I repbase;    DNA;    INV; 3352 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_AA_;
KW   BEL-61_AA-LTR; BEL-61_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions  735018  731667.
XX
CC   Positions [2401-2964] - Integrase core
CC   'GAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           868..3327
FT                 /product="BEL-61_AA-I_1p"
FT                 /translation="MDDKDLDLTPEVSTEKVLGMWWCTASDTFMYKIGWNR
FT                 YDRALMEGCRRPTKREVLRVLMSIFDPLGLIGHFLMFLKVLLQEVWRSGVQ
FT                 WDEGITDDAFTKWKQWLKLLPQVEQVHVPRCYRSPSHDIIDRAELHTFADA
FT                 SECGMSAVVFLRIIRNGTIECRIVAAKTRVAPLKFVSIPRMELQAALVGTR
FT                 LAHTITDSLSIEISKRYYWTDSRDVLCWLNSDHRRYTQYVAFRVSEILDST
FT                 EANEWCWVPSKMNVADDGTKWNSWPDLSPNSRWFAGPDFLRRHSKDWPRQP
FT                 SKNNSTDKELRPNLLANHTPCEASIDAYKFSSWKRMLNVTAFVLRFLANCR
FT                 QKLDGAPTTTGPLTAVELSSAEAYLLRSAQRDGYPEEMSHLEKLGQKHKYS
FT                 ETLSKQSSLYKLTPWLDRQGLMRMRTRIAACHYATEDAKKPIILPRDHPTT
FT                 NLIIAHYHRKFHHQNHEAVINELRQRFNIPRIRSAYAKVRKNCQRCKNDHA
FT                 NPRPPIMADLPSARLEAYSPPFTHTGIDFFGPYEVAVGRRTEKRWGMLATC
FT                 LTIRAVHIEVVASLSTDSCIMAIRNFMSRRGTPRVIYSDRGTNFIGASRQM
FT                 KEAAAAVNVDQVMKEFVNVDTAWSFNPPLAPHMGGSWERLIGSVKRNLQTI
FT                 NPPRNPTDEVLRNLLIEVENIINSRPLTHVPVDDDCAPALTPNHFLLGSSN
FT                 GIKPFSTIDESSAALRQNILASQVLANRFWKRWLSDYLPEITKRSKWFNRT
FT                 DPVTIGDLVVIADPKLPRNCWPKGKVIEVHPGKDGEVRSATVRTSTGVYVR
FT                 AVTKLAILDVRRDESKPV"
XX
SQ   Sequence 3352 BP; 971 A; 807 C; 823 G; 751 T; 0 other;
     aattaataaa ttcgtttacg cgaacaatgt cgggtcggaa aactgggaag gataaaaatg        60
     gttcgaaagg tacgcggtcg aaggaaaagc aattagaagt gttcagtact agtggtgatg       120
     caaatgtagt ggtggtggtc actgaagaag gtaaggagtc gtctggagat aagaaagatc       180
     ctgagcaagc tggagaacag agctgtacgt tctgccagga ggcggacaat gacgaaatgg       240
     tccaatgcga caagtgtgac aggtggatcc actttgcgtg tgttggcgtc acagaaggaa       300
     tagcggatga gagctggagt tgtcccaaat gtgttactac aaccgggatc cagcagccgt       360
     cttcttctgc cataaatcgc cttccgatca tatattcaag ccgcgcagga caacagaagc       420
     cagctgccac aaaagatcag ttcacctcga aagcttctct tgaagtcggt aagaatatac       480
     actgccacga taagacggcc cattcgttga agtcatcatc atcgcggaga tcccttttgc       540
     aactacagtt acaacggctc gaggaagaac gagaacacga gaagcaacaa gcggaaaaac       600
     atcgggctta tctggacaga aaatacgaac tactagaaca gatgcacagt cggaccggat       660
     ccgaatatag tggatcacag gaacggatta gacagtgggt tcaggataca aacaatatcc       720
     gtacggaaga cgccttagat ccccggtttg ctgaagtttt cgagccacag aggcactcta       780
     cgcagaacta ttccggagaa gcacaggtcg gttccactcc accagcgact cggtttcgtc       840
     agagcgattg cagaattgaa gaagttgatg gacgataaag atctggactt gacaccagaa       900
     gtgagcaccg aaaaagtctt gggaatgtgg tggtgtactg cctcagacac atttatgtac       960
     aaaatcggat ggaatcgcta cgaccgtgcc ctcatggaag ggtgcagacg cccaacaaaa      1020
     cgagaggtgc tacgtgtgct gatgtctatt tttgatcctc ttgggctaat cggtcacttc      1080
     ctgatgtttc tgaaagtact gttacaagaa gtgtggcggt ctggtgtgca gtgggacgag      1140
     ggaataaccg acgatgcgtt cacgaagtgg aaacagtggc tgaagttatt acctcaagta      1200
     gagcaggttc atgtcccaag atgttatcga tcgccatccc atgacatcat agacagagca      1260
     gagcttcata catttgcgga tgccagtgaa tgtggcatgt ccgctgtcgt ctttttgcgt      1320
     attatcagga acggaaccat cgaatgcaga atcgtggctg caaaaacgag agttgcgcca      1380
     ttgaaatttg tatccatccc tcgtatggaa ttacaagccg ctttggtagg cactagactg      1440
     gcacatacca ttacagattc cctgtccata gaaatatcca agcggtacta ctggaccgac      1500
     tcccgcgatg tgctttgttg gttgaattct gaccatcggc gatacacaca gtacgttgcg      1560
     ttccgtgtca gcgaaattct ggatagtacc gaagctaacg agtggtgctg ggtaccgtct      1620
     aagatgaacg ttgcggatga cggtactaaa tggaactctt ggccagacct ctcacctaat      1680
     agtagatggt ttgcaggtcc ggatttctta cggcgacact cgaaggactg gccacgccaa      1740
     ccatcaaaga acaattctac ggacaaagaa ctccgtccta atttgctcgc gaatcacact      1800
     ccatgtgaag cttccatcga tgcttacaaa ttctccagct ggaagcgcat gcttaacgtg      1860
     acagccttcg ttctcaggtt tctggccaat tgtcgtcaaa aattggacgg agctccgact      1920
     accaccggac cactaacagc ggtcgaatta agttccgctg aagcatatct tctacgatca      1980
     gcgcagcgtg atggatatcc tgaagagatg tcccacttgg aaaagttagg acagaaacac      2040
     aaatactcag aaacgttatc caagcaaagc agtctgtaca aattaactcc gtggctagat      2100
     cgccaaggac tcatgcgaat gcgaacgcga attgcagcct gtcattacgc tacagaagac      2160
     gctaaaaagc caataatctt accgcgtgac caccccacta ccaacttaat aattgcgcac      2220
     tatcatcgaa aatttcatca ccaaaatcat gaagcggtga tcaacgaact tcgtcagaga      2280
     ttcaacatcc cgcgtatccg ctcagcctac gccaaagtga gaaaaaactg ccaacgatgc      2340
     aagaacgatc atgccaatcc acgtccacca atcatggcag accttccatc ggcgcgactt      2400
     gaagcatatt cgccaccctt cacacacacg ggtatagact tttttgggcc atacgaagta      2460
     gcagttggaa gacgcactga aaaacgatgg ggaatgctcg caacttgtct aaccattcgt      2520
     gccgttcata tcgaagtcgt ggcctcttta agcactgatt cttgcataat ggcaattcgc      2580
     aacttcatgt cgcgtcgagg tacacccagg gtgatttaca gcgatagggg aaccaacttt      2640
     atcggagcgt ctcgtcaaat gaaagaggca gctgcagcag tgaatgtgga ccaagttatg      2700
     aaggaatttg taaacgtgga tacagcttgg tccttcaatc cacccctcgc accacacatg      2760
     ggtgggagct gggagagact gataggaagc gtcaagagaa atcttcaaac gataaaccca      2820
     cctcgaaacc caactgatga agtacttcgc aacctactga tcgaagttga aaacatcatt      2880
     aactccaggc cgctcaccca cgtcccggtt gatgatgact gtgctcccgc gctgacacca      2940
     aaccattttc tccttggttc ctcaaatggt atcaagccgt tctctactat cgacgaaagc      3000
     agtgctgctc ttcgtcaaaa tatactagca tcgcaggtgc tagccaacag gttctggaag      3060
     cgttggctaa gcgactacct tcccgaaatc accaagcggt caaagtggtt caaccgcacc      3120
     gatccagtaa ccataggtga tctggttgtg atagctgacc ccaaactacc ccgtaattgc      3180
     tggcccaaag gtaaggtaat cgaagtacac ccaggcaagg acggagaagt tcgctcggcc      3240
     actgtacgaa catctactgg agtatacgtt cgagcggtca ccaaattagc aattctggac      3300
     gtgaggcgcg atgaaagtaa gccagtctga acgctggcgt acctgggggg ag              3352
//
ID   BEL-61_AA-LTR repbase;    DNA;    INV; 785 BP.
XX
AC   supercont1.17;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_AA_;
KW   BEL-61_AA-I; BEL-61_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-785
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.17; Positions  731666  730882.
XX
SQ   Sequence 785 BP; 269 A; 160 C; 131 G; 225 T; 0 other;
     tgtgaactgt cctagtgaac agcgcgcgcc cattatgttt gtgcctccta acaggtctgg        60
     ccatgctgct ctgggtgcac tgattcggaa tgacagagct gccgcctgtc acgagcgtga       120
     gtagacaaga aaccgaaaac aagagaacga gtgatacaag tgaaatacct actgctaaat       180
     taagttgaat ttggtaataa tcctgttaaa ttaatactta aacctaaaat aagtgtattg       240
     aaatcaggta catgagccat tcgcttatat atatacccaa aactaatgta tttctataac       300
     tagtgcttta aactattgta caaagtattg tgccaaccgt tgaatcccca acctacaaga       360
     tcctacacct aagtcgatac gggtaagagt atttaaacta taaaactgct tcgaaatact       420
     taaaaaaaga tcattgtagc tgcacaggaa taccaacacc ttttccaaac cctaagaccc       480
     atccggatta gactagggga attaaacgta agtcgaacct ttgaacttaa atgaattatc       540
     tacagctaaa ctacctatat aatataatat gtacttatga ctacacttat gttaaaagtt       600
     atataccaaa ttaccatgca atctgtattc ttaaacaaaa tttatatttc atccttcatt       660
     ccatgcagga atttattaat ctcccgtaat aaagagctgt aaactacaga ttgctccgga       720
     ggttaactat acggaagaat ccccctttca gtctgagtga ctgtttgtcg tgacgaaatt       780
     cgaca                                                                   785
//
ID   BEL-61_CQ-I repbase;    DNA;    INV; 3382 BP.
XX
AC   AAWU01017211;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_CQ_;
KW   BEL-61_CQ-LTR; BEL-61_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3382
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 275-275 (2011).
XX
DR   GenBank; AAWU01017211; Positions    9663   13044.
XX
CC   'GCGCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..2990
FT                 /product="BEL-61_CQ-I_1p"
FT                 /translation="MWRSITSMKLEDAFPQRAHAKQKIKKLRDIILGLKNP
FT                 SLRQLTRLRQHLWELYDEYGNAHSCIVGNVPDNDLAQQEEEYNDFDHLFNE
FT                 AGVPLEEKLIALRSAAPKTSATYRVEHQQHPWGRSVSNFYGCSSWSTSMMS
FT                 CESGQPELSGQATNLNQRSRLRNLEADVVLRNHHPPTSSPSSPPEPRSRSQ
FT                 NLEPDTALRSCMPPTNGPSCRSKPTSASDVLDTEVVMRDHLQPQTEANPTD
FT                 LPESTTSSEVTKTNAKCVPLQPVQRNPNESRNGRVLPDDGIYTTSAQTPNS
FT                 VLNHEANPIATDNGLESQVETDERRKLAIPTVTTLVNTDRCSEDSGSRPEA
FT                 EKIPTVLPSFPKPDLFDSQRSLMDGDTRTKEREPLSAVNLRNEKTNSLSVE
FT                 HGSSLMIIQWDVVTLWTNAELNPPLPTAANAPDKRRPTIACPNGPNPPPHG
FT                 NRKKHAVNKTAAPNPRKTDGLSPKFPDQLHAVLCRGAPHEQRPTSSTSGDL
FT                 RDTGAPEPNRVNATHQHHGEKPLQKRKSETEQLTKKCARYERKGDSKHALK
FT                 RLQHRAAPKKSIPTSEALNRRPHLDEPPDLPPKRSTIAAVRWTCLKQNRTN
FT                 GSLCCSELKATTVKSKTKPKSPRSRSLWTISSTAAAVLVSMLPFLLAFRHN
FT                 IHAKYCENDFVGRETSFPEIGRGPCEQTVAPKSIEVNRLGVSSHTVRQLRL
FT                 LDGRQRRTIPSQPTESVPLENASRGKKSVQPLHDHTKLFQRNQPNWNEQAC
FT                 MVCSESPQCDLPDPGSFKSSSTKHPNLPQRLQQIASGREKKPPQKQLHARS
FT                 PKTVQPTGKSNQADQRGSKSKCIHTGSQHLKAPQKVFQTSEALDFLLHLCE
FT                 APASPRGRRHIATLCRIRQKGIPTKTRRCWSNL"
XX
SQ   Sequence 3382 BP; 980 A; 1061 C; 813 G; 528 T; 0 other;
     tatggtccat ccgaaccgga ttggactttc gagtgtgtgc cgccactaga gcaatcggac        60
     agaaagtgta gtgtgccatc aagaacgatt ccggaagtga gcttccgggg aagtaaagtg       120
     tcaagtgatt cggaacatcc ggctggaagc tcctgtgcca cgaaagcgaa attgaaccct       180
     ccctgctgcg gcaggacagt aagaaagaag acatcccggc tgtgaccgaa cagtgcaaaa       240
     aacaaacatc cacccgcgga aaccagattc cgccgtcgac gcaacagcag cgatccaccc       300
     cgaacaacct gccaggcgat tctccaaaca ccatgtggag atcgatcacc tcgatgaagc       360
     tggaggatgc cttcccacag cgagcgcacg ccaagcagaa gatcaaaaag ctccgtgata       420
     tcatactcgg cttaaagaac ccgtcgttaa ggcagctaac gaggctgcgt cagcaccttt       480
     gggagttgta cgacgaatac ggcaacgctc acagctgcat cgtcggaaac gttccggata       540
     acgatctcgc ccagcaagaa gaagaataca acgactttga tcatctcttc aacgaagccg       600
     gagtgccgct ggaggaaaaa ctcattgctc tgagaagcgc agctccgaaa acaagtgcaa       660
     cttaccgcgt tgaacaccag cagcacccct gggggaggtc agtgtcgaat ttctacgggt       720
     gcagcagctg gtcaacctcg atgatgtcct gtgagtccgg ccaaccggag ctctctggac       780
     aagccacaaa cttgaaccaa cgatccagac tcagaaatct ggaagcggac gtggttttgc       840
     gaaaccacca cccgccgacg agcagcccaa gctcacctcc cgaaccccgg tccaggtccc       900
     aaaacctgga accggataca gctttgcgaa gctgtatgcc gccaacaaac ggcccaagct       960
     gccgatccaa gccaacatcc gcgagcgatg tcttggacac cgaagtggtc atgcgtgacc      1020
     accttcaacc tcaaaccgaa gccaatccaa cggacctccc agagtccaca acctccagcg      1080
     aagttaccaa aaccaacgcc aaatgcgtgc ccctccaacc ggtacaaaga aaccccaacg      1140
     aatcccgaaa cggccgtgtc ctcccggacg acggcatcta cacgactagt gcgcaaactc      1200
     ccaacagtgt cctgaaccac gaagccaacc cgatcgcaac cgacaacggc ctcgaatcac      1260
     aagtcgaaac cgacgagaga aggaaactcg caattccgac ggtgacaacg ctcgtcaaca      1320
     ctgaccgctg ctcagaggac agcggatctc gacccgaagc tgagaagatt ccaacagtgc      1380
     tgccaagctt tcccaaaccc gacctgttcg actcccaacg ttcgctcatg gacggtgaca      1440
     cacgaacgaa agaacgcgag ccgctgtcag cggttaatct ccggaatgaa aagacaaatt      1500
     ccctcagtgt cgagcacggc agctcactga tgatcatcca gtgggacgtt gtaaccctct      1560
     ggaccaacgc ggagctcaat ccgccgctgc caaccgctgc gaatgcgccc gataaacgac      1620
     gcccaacgat agcctgtccc aacggtccca acccgccgcc ccacggaaac cggaagaagc      1680
     acgcggtcaa caaaaccgca gcacccaatc cacgaaagac tgacggcctt tctccaaagt      1740
     tcccggacca gttacacgca gtgctttgcc gaggcgcacc acacgaacaa cgacccacca      1800
     gctcgacttc cggcgatctg cgagacacag gagctccgga acccaatcgc gtgaacgcga      1860
     cacaccaaca ccacggagag aaacctctac agaaacgaaa gtccgagacc gagcaattga      1920
     caaagaagtg cgcccggtat gaacgcaaag gtgactccaa gcacgccctc aaacggcttc      1980
     agcatcgagc agcaccgaag aagagcatcc caacgagcga ggcgctcaat cgtcgaccgc      2040
     acctggatga accacccgac ctgccgccga aacgaagcac tattgccgca gttcgctgga      2100
     cctgtctgaa acagaaccga acaaacggca gtctctgctg ctctgagttg aaagccacca      2160
     ctgtcaagtc taaaacgaag cccaaatccc cacgaagcag atcactatgg acaatttcaa      2220
     gcaccgccgc tgccgtactt gtgagtatgc tcccattttt gcttgctttt cgccacaaca      2280
     tacacgccaa gtactgcgag aacgacttcg tcggtcgtga aaccagtttc ccggagatcg      2340
     gccgtgggcc gtgcgaacag accgtcgctc cgaagtccat cgaggtcaac cgactcggtg      2400
     tgagcagcca cacagttcgc caactacgat tgcttgatgg ccggcagcgg agaacgattc      2460
     cgagccagcc aaccgaaagt gttccgttgg aaaacgcaag taggggaaag aaaagcgtcc      2520
     aaccgctaca cgatcacacc aagctattcc aacgaaacca gcctaactgg aacgaacaag      2580
     cctgcatggt ttgtagcgag tcaccgcagt gcgacctgcc cgatcccggt tccttcaagt      2640
     catcttccac aaaacacccc aacctgccac agcgcttaca gcagattgcc tctggccgcg      2700
     aaaagaagcc ccctcagaag caactacatg cacgaagtcc caaaaccgtg caaccgacgg      2760
     gaaaaagcaa ccaggctgat caacgaggtt ccaagtccaa gtgtatccac accggatcgc      2820
     aacatctaaa agcaccgcag aaagtttttc aaacgagcga agcgctcgat tttctgctgc      2880
     acctgtgcga agcgcccgct tcaccgcggg gccgacggca cattgccaca ctttgccgaa      2940
     tccgccaaaa gggaattcca acgaaaaccc gtcgctgctg gtccaatctc taagacaacg      3000
     tcaaaaacag aacgaagtcc tttttactac gacgcagaat ccctggaacg actgcaactg      3060
     caactcaaga gaataggatc cagaccaacc agcggaacac gggaacccca gttaggatgc      3120
     tgcgaagcgg caaccggcgc aacaagctca attccaacca cgcacgagaa ggactcgctc      3180
     gcaaaccgac cgctcaagac atcggtgagc gaaagttgac gagacattct gagccagagc      3240
     accggaagtg ctccgttggt aaacgcaagc tgatattcga ggtgtgtcca ccagtccgac      3300
     aagagagaaa ccaagctgca ccgagtcaac gccaacctga tcaccaagat ttgttgaacc      3360
     agaggttcaa cggaggggag ta                                               3382
//
ID   BEL-61_CQ-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   AAWU01017211;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_CQ_;
KW   BEL-61_CQ-I; BEL-61_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-424
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 276-276 (2011).
XX
DR   GenBank; AAWU01017211; Positions    9239    9662.
XX
SQ   Sequence 424 BP; 103 A; 138 C; 97 G; 86 T; 0 other;
     tgttccgtac cggaagctgt ttagcgtgta cccgagcaac cctgaagggc gcgccaacca        60
     aaacaaactg acaggtggaa aacggcgcgt gcaacgacga tcgctacttt cacccccgcc       120
     gccattcttg tgccgacctc cagccgagga ggaagctgcc gacgcgtttc ggacaatttc       180
     atcgacgcga acccacgcga atcccagaac cggcttccga ggaagcaccc gcgaccgcac       240
     ttacttttgt accgagaaac cgtggagaaa tatatttaag tagtctagta aatccgccca       300
     atcccaatcc gatccgaccc tccgaagtgg tcctccgttt gttcgcccat gtgaccgtgc       360
     tcgaaagttc caccgccgca aaatacagtc cacatttctt cctctgttcg gctttgaccg       420
     aaca                                                                    424
//
ID   BEL-61_DTa-I repbase;    DNA;    INV; 5168 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5168
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (20-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 3'-end is uncertain.
XX
SQ   Sequence 5168 BP; 1483 A; 1175 C; 1176 G; 1334 T; 0 other;
     attataaatg gtccttctga gtcgtatctg tcgctgatcg gtttactcaa cgtgtgaaag        60
     ttcgaaatgg aaaaactaaa gttaataagg agcaaacaaa agagcagtct gacacgactg       120
     ctttcgtttg ccgagaatcc cacagcggag tgcaacgcga atgttgctga cattatgatg       180
     gcgagactcc aagccgtttg ggcagagttc gaccgatcca cggatgacat gttcgacttt       240
     acggaatctg aaggttatgt tgatcccatg agtgactata acttgtatga aggcaaattt       300
     gtgcgagccc agctgctata cacacagata aaagagcagg ctggtgcaac acaaacggta       360
     aaaattgcag aacgtgatga aattggtaac gacgcaattt cacaggcatt acaacaacaa       420
     ctccaactgc agagggttta tgaacggttt ccaacgagta ctgaagcagt gacgccaggc       480
     agagatgtgc agttacccaa actacagatc aaaaccttcg gtggcgatta taaggaatgg       540
     ccagcgttta aggatctgta cgagcacgca atccacttaa aggaatattt aaaaaaagga       600
     caaaaattcc aatatctgaa gtcgtttctg gagggagatg cgcttagatt gattagtcat       660
     ttgcctatca cggaggcagc atatgacgca gcatgggcac gcttgataga gcgctacgat       720
     cggccccgtc atgttgttaa ttcactttta gaatctttta taaatctgcc catagccaag       780
     tctacaaacg tgggcatttt gagaaagatt tctgatggtg cgaatgaaat tgtgcgtgga       840
     ttagacgcag taggacaaac tggacgagac tgttgggtaa tacacctgct tttggcaaaa       900
     atcgattcgg agtcgagacg caagtgggtg gacttcagtc gagatttgac atctccaaga       960
     attgaagacc tttttggatt cctggatgct cgatgtgagg agttcgagct tagccatcat      1020
     gagccaacca ccgcctcgta tggacagaac acaagaggag ctgcacgatc atttgtatca      1080
     gctggacaga gttttaaatg tgttcaatgc agatcagatg atcattcact gtacgattgc      1140
     ggacacttcc ttgggctttc tgtcgaacag cgccatgcct ttgtcaaaga gaagcgacta      1200
     tgctttaatt gtttaaagcc agatcatgta tttgccagat gtgaatcaaa atatcgctgc      1260
     agacactgcc atggcaaaca tcattctctg attcatttgc aagtctcctc tagtcagcct      1320
     gttgtaaccc aaagtcagcc aagcgtatca atgacggtgc aggatgaaca ggaccagaat      1380
     gtttcgctgg tttcaatgag ccacattgca ctagcacctg ctgaacgact tgatagccgt      1440
     ccaccatctc aaataagagg aacgctccct actgcgttgg ttcatgtact taatgcaagc      1500
     ggtacatata cagtttgtcg ggtgctttta gacactgggt ccgaactatc ctacatatcg      1560
     gaaaggtgca tcaaggaact tggaattatg cgatcaccgt cccgaatact cgtatctgga      1620
     atatcatcag ttaaggcgga aacgacaagg ggcttaagca ttcttaacct taaatcaaga      1680
     gtgtcacagg atgagttgat tgtaactgct cacgttttag tcaaaatcac atcatcgctg      1740
     ccaaggaaca atatcgacac agcagcattg aagatcttcg atgatcttcc gttagcagat      1800
     tcaatgttca acaccaaatc agaggtcgat attctgctcg gaagtaatta tgtatggact      1860
     gctttttctg gacaaaagaa atttgacaat catggcaaca taatcgctgt atcaacaatc      1920
     tttggatggg taattacatc aacaatgctt tcaagtccag tagctgcaac atcgctactt      1980
     tcaacattcg acattgacgc ttccctccaa aggttttggg agctcgagaa tgtgtctgca      2040
     aacattccac cagacccaga gaactctaaa gttgaggcgc atttttgtga aactcactcg      2100
     cgagatgacc atggaagata ctgtgtagag ctaccattta aagaccaact tacagaattt      2160
     gcagacacac ttcaaggagc aatggcgcga tttaactctc tagaaagacg cctgcaaaga      2220
     gacacgaacc tgaaagcaca gtacgttaaa tttatgcacg atttcgaagt tctggggcac      2280
     atgcgaaagc tcgaaccgca agaaatacat tcttcagata ggcgtacatt ttatatgcct      2340
     catcacccgg tttctggtgt aaaactacga gtggtgttcg atgggtctta caaggaccga      2400
     catggcaagt cgctaaacga tgcgctgcat gtgggaccga gtattcagcg agacctgttt      2460
     gctgtttgcc ttcgatttcg catttatcca tatgtgtttt ccgcggacat tgttaaaatg      2520
     tttcgtcagg tatgggtttc cactaaacat cgaaactacc aaagaatttt atggagacag      2580
     gatccaaaag aagaattagc ccattatcag tggtgtactg taacatatgg cacggcctgc      2640
     gctccatttc tggctgtaag agtacttgag caactggcaa acgactacaa gcaagattat      2700
     cctgatgctt caagaatcgt acttgaggat ttttacgtgg atgatgtttt aacgggggca      2760
     agcacggaag gtgagctgat acaacgaaag gatgaactcg taagactatt tgaacacgca      2820
     cagcttgagc tgggaaaatg ggaatctaac agcgaattga ttggtggctc taagacgagt      2880
     ctaaacccag atgttataag catgtcgaaa gatgaaacaa cgaaggtgct tggtattcat      2940
     tggaaaccag atcctgacat attggtatac aacgtcaatc tgatcgaaac cgcagagtgt      3000
     acgaaacgcc aggtattgtc cgatgtctct cggattttcg atccgctcgg gttactagcg      3060
     ccggtagttg ttcaatttaa aatattgttc caagagttat ggctgcttga cctgaactgg      3120
     gactcaccat tgcccgataa tttgacggaa ctgtggcaga aataccgaaa ggatattacc      3180
     aaactatctg acttgcaggt aaagaggcat ctgggctaca cttctggacc aattgagttg      3240
     catgcattct cagatgcatc gataaaggcc tactccgcag ttgtatacag ccgagtcaaa      3300
     cttccggacg gcagcttcga ggtgtgcctt ctcgctgcaa agacacgcgt ggcaccactt      3360
     aaacagcagt cattgcctcg attggagctt tgtggggcgt tgcttttgag tcgactagtt      3420
     gcatctatca gggctgcatt aaagcatatc ccaatcaccg ttcacgcatg gtccgattct      3480
     acgatcgtcc tggcttggct gtcgctcatt ccgtccaaat taaaaacatt cgtcgccaat      3540
     cgcactgcag agattttgga aattataccc cggcatgctt ggcaccacgt caacacgaag      3600
     caaaaccctg ccgattgcgc ttccagagga atgatggctt cagaacttct caagtttgac      3660
     ctttggtgga agggcccaga atggctgcac gacgaagacc taaatctggt aactcaacca      3720
     tgctcacaaa tttctagttc cgttgcagat gatcgaatca atgaagaggt taaaaccatc      3780
     gcactgataa ccatgggtga cactcttcct gtaaaatccg taatagacga actggctgat      3840
     cgcacctcat cctggctgag acttgttcgc atcatggcct atgtattgcg gtttattcgt      3900
     cgtcgaggat cccaacatac acccagttcg atatctttgt gctttcaaga aatatttgaa      3960
     gcacgtacct actgtgttca acatgttcag gcagcatttg aagatgaccg tgagcggtta      4020
     aagaatggac gccctttaag aaaggattcc aagctgcgca cactttcccc gattttggac      4080
     aacaacggac ttctgcgtgt gggtggacga ttaagcaact cggaattgac cttttctgcc      4140
     aagcatccgg tcattatgcc caaaacgcat cgtatcacat acctcattgt agagaatgag      4200
     cacaggttac acctgcatcc gggcgtatcg gcactctttg ccataactcg tcaaaacttt      4260
     tggattttag gtgcacgaaa cctgattcga aaggttacac ataactgtct gaattgtttt      4320
     aagcaacgtc aacatactgc tcatcagttt atggcggacc ttcccactac cagagttcgt      4380
     caagcatacc cgtttcaaaa cacgggatgc gactatgcgg gacctatgat ccttaaagta      4440
     cacaagggtc gcaatccccg caaggagaag ggctacatat gccttttcgt ttgtatggtt      4500
     acctcagcac ttcatctgga attggcaact gaccttagta cggaaacctt cttggcagcc      4560
     ctacgccgtt tcatttcccg tcgcggaaaa tgcacagaaa tgtttagcga taacgggcga      4620
     aactttgttg gtgctaagcg tcagctaaat gaaatggaac aacttcttcg atcacagctg      4680
     cataacgaca ccattgaaca agcacttgca tcagaaggca taaagtggaa ctttataccg      4740
     ccacatgctc cacattgggg tggcaaatgg gagtccgcag tgcgatcggt taagatgcat      4800
     cttcacagag tactaggcaa cgccactctc actttcgagc aaatgcatac tttattagca      4860
     caagttgagg ccgtggtcaa ttcgcgtcca ctgtattcaa catccgacac caatcttggg      4920
     tatttatctc ctgcccacct gcttattggt cgtccgtaca ccttagtacc ggaaggagac      4980
     cttggaacag tgccaaccaa tcgattgagc tactggcaac attctcagtc acttcttcaa      5040
     gggttttgga agcgttggca ccaggagtat ttgaccacct tacaacaacg cccaaaatgg      5100
     accacacgac tcccaaatct ggaatgcgga cacatggttt tagtgaaaga ctcaaacaca      5160
     ctcaaact                                                               5168
//
ID   BEL-61_DTa-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   20-AUG-2021 (Rel. 26.10, Created)
DT   20-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-61_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-208
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (20-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 98% identical to the other LTR.
XX
SQ   Sequence 208 BP; 65 A; 33 C; 38 G; 72 T; 0 other;
     tgttgaggaa caaccgctta attttgaatt ttcccggctg caatttaaat tactcttttt        60
     tatgtatact ttatcagcgt tgccactttg gttttattaa taatgcgaat gtcagtacga       120
     atctgacgac aggaagaaga agacgtacca gcgtctatga gcaaaatcaa ataaagttta       180
     taattgaaag caattgcgtt tgtttcta                                          208
//
ID   BEL-620_AA-I repbase;    DNA;    INV; 5996 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-620_AA_;
KW   BEL-620_AA-LTR; Pao_Bel_Ele68; BEL-620_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5996
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5006-5584] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           671..5965
FT                 /product="BEL-620_AA-I_1p"
FT                 /translation="MSKRKIPLRTLQARLRGLQTTFTNLYTFMENYTANTK
FT                 PLEVSVRLNKLDDLWDQMNEAIDEIVAHDESPDDPEAFVKDRLDFENRFFT
FT                 LKTFLLEKGQPTQNTPSTSTAGTSSASTPHVRLPQITLPKFNGKIDEWLTF
FT                 RDLYTSLIHWQVELPAVEKFHYLRSQLEGEALAVIDSLPLTAANYSVAWDL
FT                 LKQRYTNSKFLRKRQVQALFELPTVKKETASELHGLLDSFEKIVRSLDQVV
FT                 VNKADYKDLMLIHVLTSRLDSTTRRSWEEHSSNQQTDTLKDLTDFLQRRLR
FT                 ILEALPGKAPEQKVEPGHSKLPKRVSAVKSCNATFQSSSPSKCIVCPENHL
FT                 LYQCPQFLKMAVSDRDGILRSNSLCRNCFRRGHQAKDCSSKFSCRHCRARH
FT                 HSLVCFKGKVTEVKTSDKPEPTTTTSESSAESNTSRVVNLATTGVKICNSA
FT                 TSGQQHQAPTTGVALLTAVVELEDDKGNKLHARALLDSAAECNLISRRLRK
FT                 MLTVKEENSTVEVIGIQGMASKVQGKFTVLVKSRVTNFSQPMEVYVLPKLA
FT                 VQVSTATFDTSVWDIPKGIELADPDFLKGERIDLLLGAESFFEFFVSDRRI
FT                 RLGENLPLLVDSVFGWVVTGRYSVGGPIQSVLCKVAISSRLDEVLERFWRC
FT                 EEIGLENNYSPEEARCEAHFAQTIKRNASGRYVVSLPKNEEVLVKLGSSKS
FT                 IAERRFFQLERRLTRNEKLREEYCAFMAEYEALGHMRLVAETVEEEGRCYL
FT                 PHHPVVKEESTTTKVRVVFDASAQTSTGFSLNDGLLAGPVIQDDLRSIILR
FT                 SRTRQIILVADIEKMFRQIDVCPEDCRLQSILWRSSPDKPLATYELSTVTY
FT                 GTKPAPFLATRSLSQLAMDEAEEFPLAAKAVMEDFYMDDAITGAEDPNVAK
FT                 QLRIQLQELLRRGGFVLRKFASNCEAVLEDLPIENRSIQTSDGIHLDPDSS
FT                 VKTLGLVWMPNSDTFRFKFRFSPLTEDAILTKRKVLSEIATLFDPLGLVGA
FT                 VITKAKIIMQLLWRLQDENNRQSAWDAKLPAKVEEEWVRFYQRLPILNELR
FT                 IARLVTLTKPVSAQLHLFSDASEKAFGVCAYLRTQDEKGEVKVALLSSRSR
FT                 VAPLKTQSIPRLELCGALLASELYLKIKASIRFSGECFFWVDSTTVLRWLH
FT                 APPLTWATFVANRVSKVQASTENCHWRHVPGEQNPADQISRGIWPQEIVDN
FT                 QLWWKGPSWLQLSPENWPSDKAFTSEGHEEERRRAAFVVAAPVEANFFAEY
FT                 LARFSSFTTLIRTTAYLLRYFHNLRAKRELRRSSGFLTTEELQQAENFIVL
FT                 RVQRETFHREVSALTKGECVPRSSPLRWYHPFVAENGLLRVGGRIGQANES
FT                 EYTIHPIVLPARHLVTKLLMRYYHQRLLHAGPQLMLSTVRLRYWCLGGRNL
FT                 ARETYHQCVRCYRTKPKAIRQFMAELPAPRITPTRPFATTGVDYFGPVYVR
FT                 TGYRQRAVKAYVSVFVCFSTKAVHLELVTDLSTARFLQALRRFVSRRGRCA
FT                 SLYSDNGTNFVGAKNQMMELINRLKSKDHHDVVAKECAEDGMSWHFIPPGG
FT                 PHFGGLWEAAVRSAKVHLLRVLGDTVVSYEDMVTLLTQVECCLNSRPLTQL
FT                 SDDPEDLQALTPGHFLVGSALQALPDEDYMQTAVGKLQDLAATQRRLQDFW
FT                 KRWRSEYLTQLQARTKWWQPPVDVTVGSLVVIREDNVPPIRWKMGRITNTH
FT                 PGPDGVVRVVTLRTMNGTSTRPVSRICVLPVPASTEVKSAEGEEN"
XX
SQ   Sequence 5996 BP; 1579 A; 1468 C; 1502 G; 1445 T; 2 other;
     agtggtcctt cgaaccggat ggttgaagga aatccatccg gtaggcaatc tacggtattc        60
     atttcaccaa cgcagtcgca caaccccacc tctattggca gccgagaaac gccatcttat       120
     ttcacggcgt cggttgcaat tggcgccatc ataggagtat tgaataatta aatccaaggc       180
     acattacttg ccttgaatag gtgagtgaga ttccaacaaa attattctcc atctcccagt       240
     actgctcgtg gtctttcttt cggatcaggt ggaaatttcg atcatcgtaa ttcgacgccg       300
     gcgagactat caccattgct cggtgactca ctgcaatttc aaccggactt cgtttgtgga       360
     aacgaagcat ttcccaattc ctggttcacg cttgctggta atcactggtg atttaccaca       420
     catcgggtta aaagtgaatg gacataacct accggtgctg agggagcatc ctaaccccat       480
     cggttcagct acgttgtttc aaccgctact acagtagcac cctactagtt cgtcgttgct       540
     gattgtacgc ggagcatctt taaccaataa tctcaaggct caatttatga gctaataagg       600
     taattagctc tccaaacaca ttactctccc caagcttcgc tacttggtct tcttttttcg       660
     agggaacatc atgtcgaaac gtaaaatacc gctgcggaca ctacaggcgc gactccgcgg       720
     actccagacg acgttcacga acttgtacac gttcatggag aattacacgg ccaacacgaa       780
     accgttggaa gtcagcgtgc gactgaataa actggacgat ctgtgggatc agatgaacga       840
     agctatcgac gagatagttg cgcacgacga atcacccgac gaccctgaag ccttcgtgaa       900
     agatcggctt gacttcgaaa accgattttt cacactgaaa acgtttctgt tggagaaagg       960
     tcaaccaact caaaacaccc cgtccacttc taccgctggt acctcctctg cgtctacccc      1020
     acacgttcga ttaccgcaga tcacccttcc taagtttaat ggcaagatag atgaatggct      1080
     cacgtttcgg gacctttata cttccctcat tcactggcag gtggaacttc ctgccgtgga      1140
     gaagtttcat tacctccgca gccagttgga aggagaagcc ttagccgtga ttgattctct      1200
     accccttact gcggcaaact atagtgtggc atgggacctt ctcaaacagc ggtatacaaa      1260
     ctccaagttt ctgcgcaagc ggcaagtgca ggcgcttttc gagctaccga cggtcaaaaa      1320
     ggaaactgcs tctgaactac acggtctttt ggactccttc gagaagatcg tgagatccct      1380
     ggatcaagta gtcgtaaata aggctgacta taaggatctg atgctgatac acgtcctcac      1440
     gtcccggttg gatagcacca cgcgaagaag ttgggaggaa cactcttcca atcaacaaac      1500
     ggacacccta aaggacctca ccgattttct tcagcgtcgt ttgagaattc ttgaagctct      1560
     ccccggcaag gctccggaac aaaaggtgga acccggtcac tccaaactgc cgaaaagggt      1620
     ttcggcagtg aaatcctgta acgctacgtt ccaatcctct tcacctagca aatgcattgt      1680
     ctgccctgaa aaccatttgc tatatcaatg cccccagttt ctgaaaatgg ctgtttcgga      1740
     tagggacggt atactacgaa gcaactcatt gtgccgaaat tgctttcgta gaggtcatca      1800
     agcgaaagat tgctcgtcta aattttcatg tcggcactgt agagcgagac atcactcact      1860
     cgtttgtttt aaggggaagg taaccgaagt taagacgagt gataaacccg aaccaaccac      1920
     tacaacgtca gagtcgagtg cagaatcgaa tacatcgagg gtcgttaacc tggcaacgac      1980
     aggagtgaag atatgcaact cagccacatc gggtcaacaa catcaagcac caacaacggg      2040
     cgtcgctctg cttactgcag tcgtagaatt ggaagacgac aagggcaaca agctgcacgc      2100
     tagggcgttg ctggatagtg cagcggaatg caacctgatc agcaggcggt tgaggaaaat      2160
     gctgactgtt aaggaggaaa acagtacggt agaagtcatt ggaattcaag ggatggcctc      2220
     caaggttcaa gggaaattta cggtcctagt aaaatcccgg gtgacgaatt tcagtcaacc      2280
     aatggaagtt tatgttttgc caaaacttgc ggtacaggtg tccactgcaa cgtttgatac      2340
     cagtgtgtgg gacataccca aggggatcga acttgcggat ccagatttcc ttaagggtga      2400
     acggattgat cttctgctgg gagcggaatc atttttcgaa ttctttgtct ctgaccgtcg      2460
     catacggttg ggggaaaatt taccattatt agtcgactcc gtttttggat gggtggtaac      2520
     aggcagatat tcagttggcg gtccaatcca atctgtcctg tgcaaggttg caatttccag      2580
     tcgacttgat gaagttctcg aacggttttg gaggtgcgaa gaaattggac tggagaacaa      2640
     ttattctccc gaagaagcaa ggtgcgaagc ccattttgcg caaacgataa agcgaaatgc      2700
     gtctggtcgg tatgtggtgt cattgcccaa gaacgaagag gtgttagtca agctgggtag      2760
     ctctaaatcc atcgccgaaa ggaggttttt ccaattggag cggcggttaa ccaggaacga      2820
     gaagttgcgg gaggaatatt gcgcctttat ggccgaatac gaggctctgg gacatatgcg      2880
     attggttgcg gaaacggttg aagaggaagg tcggtgctac ctcccacacc atccagttgt      2940
     gaaggaggaa agcacaacca caaaagtgag ggttgttttt gacgcttcgg ctcaaacctc      3000
     aacaggattt tccctcaatg atgggttgct cgcaggtcct gttattcagg atgatttgag      3060
     atccattata ctgcgaagca ggactcgtca gatcattcta gtggccgaca ttgaaaaaat      3120
     gttccggcag atagatgtct gtccggagga ttgccgtctt caatcgatct tatggaggtc      3180
     aagcccagac aaaccattgg ctacttatga gctatccact gtaacctacg gcaccaaacc      3240
     ggctcctttc cttgcaacca gatccctcag tcaacttgcc atggatgaag cagaagaatt      3300
     ccctttggcg gccaaggccg taatggagga tttttatatg gacgacgcca ttaccggagc      3360
     agaggacccg aatgttgcca agcagctgag aatccaacta caggaactac tacggagagg      3420
     agggtttgtc cttcgaaaat ttgcctcgaa ttgtgaagcg gttttggaag acctgccgat      3480
     cgaaaatcgg tcaatccaaa cgtcggatgg aatccatttg gacccagatt catcggtcaa      3540
     gacactaggc ttggtttgga tgcccaacag cgatactttc cggttcaaat ttcgattttc      3600
     gccattgaca gaagacgcca ttctaaccaa acggaaggtt ttatccgaaa tcgcaaccct      3660
     ttttgacccc ttagggcttg ttggagcggt cattactaag gctaaaatca tcatgcaact      3720
     tctttggcgc ttgcaggatg agaacaaccg tcaatcggca tgggatgcta aattacctgc      3780
     gaaggtggag gaagaatggg ttcgcttcta tcaacggctt cctattttga acgaactgcg      3840
     tatagcgagg ttggtcaccc taacgaaacc agtcagcgca caactacacc tattctcaga      3900
     tgcttccgag aaggcgttcg gcgtctgtgc ttatctacga acccaagacg aaaaaggaga      3960
     ggtaaaggtt gccttgctgt catcgagatc gagagttgcc cccttgaaaa cccaatcaat      4020
     ccccaggtta gagctctgcg gggccctact cgcctcagaa ttgtatctga aaataaaagc      4080
     ttcgattcgc ttcagcggag aatgcttctt ttgggtggat tctacgaccg tgttgcgatg      4140
     gttacacgcg ccacccttga catgggcaac gtttgttgca aatcgcgtat caaaagtgca      4200
     ggcatccact gaaaactgtc attggcggca cgtacccggg gaacaaaatc cggcagacca      4260
     aatttcacgg ggaatatggc ctcaggaaat cgtcgacaac caactatggt ggaaggggcc      4320
     ctcctggctt caattaagcc cggaaaactg gccatcagat aaagcgttca catcggaagg      4380
     acacgaggaa gaacggaggc gagcagcttt cgtcgtagct gcgccggtag aagcaaattt      4440
     cttcgctgag tatcttgctc ggttctccag cttcaccacc ctcattagga caacggccta      4500
     tctcttacga tatttccata atctacgagc aaaaagggaa ttgcgacgat catctggttt      4560
     cctaacgacg gaagaattgc agcaagcgga aaatttcatc gttcttcgag ttcaacgaga      4620
     aaccttccat cgcgaggtca gtgcactaac taaaggagaa tgtgtaccac gatcatcacc      4680
     tctacgttgg tatcatccgt tcgtggccga aaatggtttg ctacgagtcg gtggaagaat      4740
     aggtcaagcg aacgagtccg agtacactat ccatccaata gtactacctg ctcgtcattt      4800
     ggtcaccaag ctgttaatgc gctattatca tcaacgtcta ttacacgctg gtccacagtt      4860
     gatgctgagc actgttcgtc ttcggtattg gtgcctcggt ggacgaaatt tggcgagaga      4920
     gacctatcat cagtgcgtgc gatgttatcg cacgaaacca aaggctattc gacaatttat      4980
     ggcggagctg cccgcacctc gaatcacccc aacgagacca tttgcaacaa ccggagtgga      5040
     ctacttcggt ccagtatacg ttcggacggg gtatcggcag cgagcggtca aggcatacgt      5100
     ktcagttttc gtgtgctttt cgaccaaagc ggttcattta gaactggtca ccgatttgtc      5160
     gaccgcgcga tttcttcagg cattacggag gtttgtgtcg cgccgcggga ggtgtgccag      5220
     cctctattct gataacggca ccaactttgt tggggccaaa aaccaaatga tggagcttat      5280
     caaccggttg aaatccaagg atcaccacga cgttgtagcg aaggagtgtg cggaggatgg      5340
     gatgtcatgg cattttatcc cacccggcgg gccccacttt ggcgggctgt gggaagccgc      5400
     cgtgcgatca gcaaaggtgc atctgttacg tgtgcttgga gataccgtgg tttcgtacga      5460
     ggacatggtg acgcttctta cccaggtgga gtgctgcctc aattcaaggc cgctaactca      5520
     gctttccgat gaccccgagg acctacaagc attaacccct ggccattttc tggtaggatc      5580
     agccttgcaa gccttgccag acgaggatta tatgcaaacg gcggtcggaa aactgcagga      5640
     cctcgcggcc acccaacgca gacttcaaga tttctggaag aggtggaggt ctgagtactt      5700
     gacccaactc caggcccgaa ccaaatggtg gcaaccacct gtcgacgtca ctgttggcag      5760
     cttggttgtt atacgagagg acaacgttcc accaatccgg tggaaaatgg gccgcattac      5820
     caatacacat cctggaccag acggcgttgt aagggtagtc acgttgcgga cgatgaacgg      5880
     taccagtacg cgcccagttt ccagaatctg tgttctaccc gtcccggcct ctacggaggt      5940
     gaaatcagct gaaggagaag aaaactgaaa ctccagtcgt ttcagggagg cgagga          5996
//
ID   BEL-620_AA-LTR repbase;    DNA;    INV; 488 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-620_AA_;
KW   Pao_Bel_Ele68; BEL-620_AA-I; BEL-620_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-488
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 488 BP; 129 A; 113 C; 105 G; 138 T; 3 other;
     tgtcggagtt caaggtaagc tgcattgagc ctcccctcga tcattggcta ccaatctaac        60
     gatcgttacc actcacagcg atcgttgggt ttctcgcttg sgcgggaata tgmgagaaga       120
     gattttgtat tatacaatag actggccttt tgccaaaccc caaattgccc aatttaccag       180
     ttctttagaa atttgcaatc cgggcagtcg cgtcgaatac tttgtattga agttaatttt       240
     gtagttaatt atgtaactag tttaagcagt ttagttaaat aaatcacagt tatagtacgg       300
     tgtktgttta aagtaaaacc cgatttctat tgtgctacgc cgaaagaccg cgaaaacccg       360
     gtgataaact gcccactttc caaacgtgtt ggctgccaac gactccaccc ccgcgaggta       420
     ccccaggatt gcgctgcgtt gagatttcgg gaggttcaca cccacggaac cagtcttgct       480
     atcgaaca                                                                488
//
ID   BEL-621_AA-I repbase;    DNA;    INV; 6151 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-621_AA_;
KW   BEL-621_AA-LTR; Pao_Bel_Ele9; BEL-621_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6151
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5217-5774] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1128..6149
FT                 /product="BEL-621_AA-I_1p"
FT                 /translation="MTHHAHYDAPGNAPVSFEQLHTFQAPPNFSAAPPNEV
FT                 QRRPSPEHLAARQVMPRDLPEFTGDPEEWPIFFSSFTNSTTACGFNNVENL
FT                 ARLQRCLKGNALKSVRYYLLSPDSVPDVINTLQTLYGRPEVIINKLIRTVR
FT                 ETSAPKSERLDTLIDFGMSVRNLTQHLIAAGQQAHLLNPALLQELVEKLPA
FT                 NIKLQWAQHLSFYPEASLQNFSNFMSAIVESVSKVVVFAGGQSTVKNEKPR
FT                 NKDKSFVHAHAESSTAGHAVKEKEEREKVCLFCGKVNHRLKDCLKFQQLQV
FT                 EERWKNVQVLKICRSCLNPHGRRPCRNSNRCGIDGCQFRHHHLLHKNDGEA
FT                 SKKSAGVSRVEDHAHHHHEQSILFRIIPITIHGATKSVTAFAFLDEGSSAT
FT                 LVERSLVEELGVEGPNVPLCLKWTANMTRNEDESQIVSLEVSGIDQKNRFH
FT                 LVNVRTVESLNLPTQTICFEELQKDHPHLRGLPVHDYKNGTPKILVGLRNL
FT                 QLAVPLKIRKGKSGIIATKTRLGWCLYGSLDRERQSEDFNYHVCECDSEAR
FT                 LEQLVKDYFNVEDCGVVRRSIMESDADARARKIMEDTTRRIGNRFETGLLW
FT                 KTDFVELPDSFPMALRRLQCLERRMEKNPELKENIHRQIQEYQAKGFAHLA
FT                 TEDELSRADPRRIWYLPLGAVFNPKKPGKVRLIWDAAAKVDGISLNSLLLP
FT                 GPDLLVSLVSVQFLFRQYPVAVSGDIKEMFHQTRVIERDRPSQCFLFRSNP
FT                 SVEPSVYIMDVLTFGATSSPTSAQFVKNQNAQEFGDKCPRAADAIIKRHYV
FT                 DDYLDSFETIEEARTVSSKVKWIHAQGGFEIRNWSSNEKAVLEHLGDQPRK
FT                 ETKDLSLKDDTERVLGMLWSTGEDILCFSTTFKDEIAGLIETETKPTKRQV
FT                 LKCVMSLFDPLGLLACILVHGKIMMQNIWRSGIKWDDFIDEITYEAWRKWI
FT                 GLLDEVNDIRIPRCYFQNAGAELYLSLEAHVFVDASEAAYAAMVYFRIVEQ
FT                 DGTGKCALVTAKTKVAPLRYVSIPRMELMAALLGARLFLFVRENHSVKINR
FT                 VVYWSDSEVTLAWIRSEHRKYRPFVACRVGEILLSTNVNDWRYVPSKQNVS
FT                 DEATKWNDGARLSAESRWFNGPTFLQLPEKEWPKSKKNITATDEELRACYL
FT                 HQEANVLRTPIEYIRFSNWNRLLRATAYIVRFVNLRNAVEKKSSETLTHEE
FT                 LKAAEILLWRLVQSEVYPDEIAILFKNKTRKVGDRLELEKSSPLWSLTPML
FT                 DDNGVLRIDSRITEAQRVAEDVKYPVILPRKHHVTSLIVNDYHRRSLHGNS
FT                 ETVVNELRQRYYIAQLRTLVRKVEQQCQWCKVYKAKPSIPRMGPLPQARLS
FT                 PGIRPFTYIGVDYFGPILVKVNRSVAKRWVCLITCLTVRAVHLELAHDLST
FT                 KSCIACLRRFIGRRGSPKEIYSDNGRNFIGANRVLRDQIHLIEQDVATTFT
FT                 NTETKWIFTPPSCPHMGGSWERMVRSVKKAMASLPQDNKLDDEGLQTVLVE
FT                 AEAIVNSRPLTYLPLNSAEQEALTPNHFIMGSSSGIKQPTIAIQESASRIT
FT                 ASWDLIQRRTNHFWRRWVLEYLPTLTKRTKWFNEVKPIKIGDLVIVIDETR
FT                 RNGWLRGRVLEVTAGKDGRVRQAIVQTSGGLFRRPVSKLAVLDVVGCSEGD
FT                 PHGEG"
XX
SQ   Sequence 6151 BP; 1813 A; 1415 C; 1485 G; 1437 T; 1 other;
     aacttcaaga tttaatatcg acatggaaag acataccgct accccaaccc ctcgtccggg        60
     gtacagttgt gtcgcttgta agcgaccgga ttcagcggac aatatcgttg cttgcgataa       120
     atgcagtttg tggtggcatt atacatgcgc gggagttagc gattccgtta aggaacagga       180
     atggacttgc aggaattgtc ttcctgttcc cacaatacca caatcagtgc gatcgactac       240
     atcaagtcgc agagcgattc tccagatgaa acggctagcc gaacagcaag aattagagag       300
     aaaacagttg gagttggaga agaagcaact ggaacttcag aagaagcact cgcaggagaa       360
     atttgatctg gaggagacta tagcggaaga ggaagataat cgcagtgtca gaaaccgcat       420
     actcgagatt gagtcacgag ataagcaggt atccacgtgg attaatcagc atgcccccgt       480
     aatacaacaa caagtcgacc agtcttcaca tcccgcagca gcgcttactg cttttccacg       540
     ttcgatgcaa tcctacacca acaaccaagc aaatgatgag caagatatac atggcgccgt       600
     aggaggaaac gatccctcga tccaatacgg gcgacgtaaa aatcctactc cccacgaaat       660
     ggagaaagcc gagcaagaag tgcaaactga attccagcag ctacagcaac agctgcgaac       720
     aatgccaaca gcagtcggaa ccgacgctcg cccaaataca ggcgcttgaa acacagttgc       780
     aaagattccg gattcaagtt caacaacgaa atcactctac tcctcttgga cttcctgcgc       840
     gaagcacatt taaaggtgcg atccctaaag caaaggaagc aggacaaatc aacgaaatac       900
     aacgatcgtt tgagaagtcg ctcccaacga cagtctcgct gaaccaatcg cggcagaatg       960
     tattgccaaa tcgttcggca gataagctta tttcgttcga gcagacgcga acgtatcacg      1020
     cgcactcaaa tccaatctta tctgagcggg tgacagacga acagccgcgt accctgcaag      1080
     cctcatcaac tattttccct cctggatcga ttccatgccg accatcgatg acacaccatg      1140
     cccactatga tgctcctggc aatgccccag tttccttcga acagttacat acgtttcagg      1200
     cacctccgaa tttctcggcc gcaccaccaa atgaggttca gcgtcgaccg tcaccagaac      1260
     acctcgcagc acggcaggtg atgccacgtg acttacctga attcacaggc gatccagaag      1320
     aatggccgat tttcttcagc agctttacaa attccacgac tgcttgtggg ttcaacaacg      1380
     ttgaaaatct tgcccgcttg caacgctgcc ttaaaggaaa cgccttaaag tccgtgcgat      1440
     attacctttt gtcacccgac tctgtacccg acgttattaa tactctccaa acgctctatg      1500
     gccgcccgga ggttattatc aacaagctga ttcgaactgt gcgcgagact tcagcaccaa      1560
     agtccgagag actggacacg ttgattgatt tcggaatgtc cgttagaaac ttgacgcaac      1620
     atcttattgc agcgggacag caagctcacc tactgaaccc ggctctacta caagaactgg      1680
     ttgaaaaatt accagccaat attaaactcc agtgggccca gcatctgtca ttctaccctg      1740
     aggctagcct gcagaatttc agcaacttta tgtcagcaat agtcgaatcg gtcagcaaag      1800
     tggttgtatt tgccggcgga caaagcacag taaagaacga gaaaccgcgg aacaaagaca      1860
     aaagttttgt tcatgctcac gccgagagct caacagctgg tcatgctgtg aaggaaaaag      1920
     aagaacgcga gaaagtatgc ctattttgcg ggaaagtgaa tcatcgtctt aaagattgtt      1980
     tgaagttcca acaacttcag gtagaagaac gatggaaaaa tgtccaggtc ttgaagattt      2040
     gcagaagttg tcttaatcct cacggacgtc gcccatgccg aaattcgaat cgctgtggaa      2100
     tcgacggttg tcaattccgt catcatcact tgttgcacaa aaacgatgga gaagcttcca      2160
     agaagtcggc tggggtttca cgagtagaag atcacgcaca tcatcatcat gagcaatcca      2220
     ttctttttcg catcattccc ataacaatcc atggggccac aaagtctgtt actgcgttcg      2280
     ctttcttgga tgaaggttct tctgcaacac tcgttgaacg cagtttagtc gaagaacttg      2340
     gggtggaagg accaaacgtg ccactttgcc tcaaatggac agctaatatg acaaggaatg      2400
     aggatgagtc acagatagtg tcacttgaag tatccgggat agatcaaaag aatcgattcc      2460
     atttggtgaa cgtacgtacg gtggaaagtt tgaatctgcc tactcagacg atatgttttg      2520
     aggaactcca aaaggatcat ccacacctta ggggcctccc tgtccatgat tacaagaacg      2580
     gcacccccaa gatactcgta ggccttcgaa acttgcagtt agcggtacca ttgaagatca      2640
     ggaaaggaaa aagcggcata atagcgacca aaactcgttt gggatggtgc ctgtatggca      2700
     gcctggatag agaacgacaa agtgaagatt tcaactatca cgtatgtgag tgtgattctg      2760
     aagcaagact agaacagcta gtcaaagatt atttcaacgt tgaagactgt ggagtagtgc      2820
     gtcgaagtat tatggaatcc gatgcggacg caagagcacg aaagatcatg gaggacacca      2880
     cccgcaggat aggaaaccgt ttcgaaactg gtcttttatg gaagactgat ttcgtcgagc      2940
     tgcctgatag ttttccgatg gctttgcgcc gtctgcagtg tctggagaga cgcatggaga      3000
     agaatcccga actaaaagaa aacattcatc gtcaaattca ggaatatcaa gcgaagggtt      3060
     ttgctcacct ggcaacggaa gacgaacttt ccagggcgga ccccagacgg atctggtacc      3120
     tcccactagg agcagttttc aatccaaaga aacctggaaa agtgcggcta atctgggacg      3180
     cagcagcaaa agtggatgga atctcgctga actcactatt actgccaggt ccagaccttc      3240
     tcgtatcgct ggtatcggtt cagtttcttt ttcgtcaata cccagtagcc gtcagtggag      3300
     acatcaagga aatgttccac cagacgagag ttattgagcg agatcggcca tctcaatgct      3360
     ttctgttccg cagtaacccg tcagttgagc ctagcgtcta cattatggac gtgttgactt      3420
     tcggagccac tagctctcct acgtcggctc aatttgtaaa aaatcaaaac gcacaggaat      3480
     ttggagataa gtgtccaagg gcagcagatg ccataataaa aaggcactac gtcgatgact      3540
     acctcgacag ttttgagaca atcgaggaag caaggacggt atcaagcaag gtaaaatgga      3600
     ttcacgcaca aggaggattt gaaatccgaa attggtcgtc gaatgaaaaa gcggtattgg      3660
     agcatcttgg tgaccaaccg aggaaagaaa cgaaggattt atcattgaag gacgatacag      3720
     aacgtgttct aggaatgttg tggagtactg gagaagacat tctatgtttt tctacaacct      3780
     tcaaggacga aattgcaggg ctaattgaaa cggaaacaaa accaaccaag cgtcaagtac      3840
     tgaaatgtgt catgagcctg tttgatccgt tggggctgtt ggcgtgcatt ctagtacatg      3900
     ggaagatcat gatgcagaac atttggcgca gtggcataaa atgggatgac tttatcgatg      3960
     aaatcactta cgaagcgtgg aggaaatgga ttggactatt agatgaagtc aatgacattc      4020
     ggattcctag gtgctacttt cagaatgcgg gggccgaatt gtacctttca ttagaggctc      4080
     atgtttttgt cgacgctagc gaagcagctt atgctgctat ggtgtacttc cgtatagttg      4140
     agcaagatgg cacagggaaa tgcgctttag tgacagctaa aacaaaggtt gccccgttgc      4200
     gttatgtttc tattccacgg atggagctaa tggccgcact tttgggagcc cggttgtttc      4260
     tgttcgtccg tgaaaatcac tccgtcaaaa tcaaccgagt agtctattgg tctgactcag      4320
     aagtcaccct ggcttggatt cgatctgaac atagaaaata tcgcccgttc gtagcctgtc      4380
     gcgttggaga aatcttgctc tcgaccaatg taaacgattg gcgatacgtt cccagcaaac      4440
     agaatgtttc agatgaagct accaagtgga atgacggagc aaggcttagc gctgaaagcc      4500
     gttggttcaa cggcccaaca tttctgcagt taccggaaaa ggaatggccg aaatcgaaga      4560
     agaatatcac ggccacggat gaagaactga gagcatgtta cctacatcaa gaagccaatg      4620
     ttctgcgcac accaatagaa tacattcgat tttccaattg gaatcgattg cttcgagcca      4680
     cggcgtatat agttcgtttt gtgaatcttc gaaacgctgt ggaaaagaaa tctagcgaaa      4740
     cattgactca cgaagaattg aaagcagcag aaattctact ttggagacta gtgcaatcag      4800
     aagtctatcc ggatgagatt gcgattctct tcaaaaacaa gaccaggaaa gtcggcgaca      4860
     ggttagagct tgagaagtca agccctcttt ggagtttaac tccaatgctt gatgacaacg      4920
     gagttcttcg aatcgacagt cgcattacgg aagctcaaag agtagctgaa gacgtgaagt      4980
     atccagttat actacccaga aaacatcatg ttaccagcct tatcgtgaat gactaccaca      5040
     gaagatccct acacggaaac tctgaaacag tggtcaacga attacgtcag cgatactata      5100
     ttgctcaatt gcgcacccta gtaagaaaag tagagcaaca gtgtcaatgg tgcaaggtgt      5160
     acaaagctaa gccttcaatt ccaagaatgg gtcctctccc gcaagcacgt ttatctccag      5220
     gaatacgccc attcacctat atcggcgtcg actattttgg gccaatcttg gtcaaagtga      5280
     atcgatccgt agctaagcga tgggtgtgct tgattacgtg cctaacagtc cgtgccgtgc      5340
     acttggagct ggcgcatgat ctttcgacga agtcctgcat tgcctgcctc cgtcgtttta      5400
     ttggtcgcag gggttcaccg aaagaaatat attccgacaa tggacggaac tttattggag      5460
     cgaatcgcgt tctaagagac caaattcatc tcatcgaaca agatgtggcg acgactttca      5520
     ctaatacgga gacaaagtgg attttcactc ctccgtcctg tcctcacatg ggcggttcgt      5580
     gggagcgtat ggtacgctca gtaaagaaag ccatggcaag ccttccgcaa gataacaaac      5640
     tcgatgatga agggttacag accgtcttag tggaagccga ggccattgtt aactcgcgac      5700
     cacttaccta cttaccgctc aactcggctg aacaggaagc actaacscca aaccacttca      5760
     tcatgggaag ctcgtccgga ataaaacaac caacaatagc tatacaagaa tctgcgagca      5820
     gaattaccgc gtcttgggat ttgatacagc gacgcactaa ccacttctgg agacgttggg      5880
     ttctggaata tctgcctaca cttaccaaac gtacgaagtg gttcaacgaa gtgaaaccta      5940
     ttaaaatcgg agatctggtg atcgtgattg atgagaccag aagaaatggc tggctacgtg      6000
     gtcgtgttct agaggttaca gcgggcaaag atggtcgagt taggcaagcg atagttcaaa      6060
     catctggtgg attgtttcga cgacctgttt ccaagttggc agtgctcgac gtagttggat      6120
     gcagtgaggg ggatcctcac ggggaggggg a                                     6151
//
ID   BEL-621_AA-LTR repbase;    DNA;    INV; 692 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-621_AA_;
KW   Pao_Bel_Ele9; BEL-621_AA-I; BEL-621_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-692
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 692 BP; 247 A; 114 C; 103 G; 227 T; 1 other;
     tgttgctacg accgtggcac tagcaacctt gcccgctaca ccttcacaac aaattctctc        60
     catcaacgct aggagcgcta ctgaacagac agacagattt aatacagaga aaattcaatc       120
     accaatgttt tgatttggaa actattgtgc tcatgtgcta tccaacattc taaaattatt       180
     ttatatttct attcaaaagt aaaattctta ttattaaatt gaattgctta aaagctaaca       240
     tttgcttcta aaattacaga taagatattt ttccaaaaag cactagaagt gtcttaaatt       300
     agttataaat aggcttaacg agttggtagg ttatacattg accaaaatta ttgaattatg       360
     taatccttat gtaatgaatc ttctacagga agagctatgc gcctttatca accgaattat       420
     tgaacttaaa ttaatcatcc tacaaaacgg taggtaaaaa tttaaaacta aatgtatgct       480
     taagatgtat tatatttcta tawtgatcct agcagattgc ttcgataaaa actggattgt       540
     tacctaacgt gttttccata atagcgcact attaaatgta agtagctcaa tattgtacaa       600
     ggcataaata attatgaaga aatattttca gcttgaagca aattacaata aagtcgctat       660
     caggattagt gcgaagtttg tttctggcaa ca                                     692
//
ID   BEL-622_AA-I repbase;    DNA;    INV; 7884 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-622_AA_;
KW   BEL-622_AA-LTR; Pao_Bel_Ele104; BEL-622_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7884
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5228-5809] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           861..1901
FT                 /product="BEL-622_AA-I_3p"
FT                 /translation="MPDLRSLNKLEHQLRKSLEGIENFVHNFDVKRDVRQV
FT                 NVRLEALEKIYGQFVEVRMKIELLLEDALEDGEGDEETLMQENDKVRQDFE
FT                 DSYYSLKAELMAFQSLGTSASRNSTLQAPDTQAATQFAKVKLPEIKLPSFG
FT                 GKIHEWVPYRDSFRSLIHDNTLLSDVDKFTYLRSSLSGDALQEINSIDLSA
FT                 ANYTVAWKALESRYENKKLIVKAHLDALFTVEALKKESYEGLNQLIGDFEK
FT                 NLQMLEKIGEKPSDWSTILAYMVCSRLDMATLRHWETHHNSKDVAKYSALM
FT                 EFLKGHCSVLQSIAPSKATSSVQQRQFRPAVCHTSSSSPRSAISAVSRVIP
FT                 CFSA"
FT   CDS           1448..4699
FT                 /product="BEL-622_AA-I_1p"
FT                 /translation="MEGVGKSLREQEVDRQSASRRTFHRGSAQEGKLRGAQ
FT                 PVDWRLREEPADVGEDRGETIRLEHHSGLHGVFQIGHGNPTPLGNPSQQQG
FT                 RSEVFGTDGVFEGSLLRPTIDCSVESYKFRATATVSSSGVPYFFKFAPKCH
FT                 FCSEPRHSVFQCVKFQRMSIPERIEAANRNKLCRNCLYPGHFARTCEKGAC
FT                 RQCHQKHHTLLHTEQPRSSVPPTQSRPPTVNQQSRQPQSKPPTPNQQTRTA
FT                 NTANTQDSHTQPATEHATTSQTHVALPITPTQNIILSTALVSIQDRYGRSV
FT                 PARALLDSCSQHCLMTKSFASKLKLDETPVYLSIQGIGSSQAVSTRLVTAV
FT                 VGPRSPNISSFAEEMSFHVLPKLTVSLPTVSINTAAWNLPNSTLLADPNFF
FT                 EMGPIDVIIGAEYYMELLKEERRRATDDGPTLQDTVFGWIVSGRIPEGPAA
FT                 SYSLVHVCSTAEIQDQLSRFWEVETCQSTSTLSVEESACEEFFDRTTYRND
FT                 EGRYVVTLPKKERLIQQLGDSRSTAIKRFLGVERRFAMNPELKKQYAEFMR
FT                 EYLAMGHMREVSEEDTSAPSYYLPHHAVLKPDSTTTKLRVVFDASCKTSTG
FT                 VSLNDALMVGPVVQDVIVDITLRFRTHRFALVGDVAKMYRMVLMNAADQRL
FT                 QRIVWRDSPSESIRTFALTTVTYGTASAPYLATKCLQRLSEKGEESHPAAA
FT                 KVLKKDFYVDDMLSGVDDIEEGKRLVSQMNDLLQSAGFSLRKWNSNSKELL
FT                 SAVPEGLRDERSILELDSSSAAVKTLGLTWEPSTDCFRFSSPAWNESTAIT
FT                 KRCVLSDASRLFDPLGLVGPVIIQAKIFLQDLWKHDCEWDEPLSPQLQDQW
FT                 REYRWNLTGLDGIAVPRWVGTSRSTEAVELHGFCDASNKAYGACVYVRTVA
FT                 ADGSVMVHLLTSKSRVAPLENLKKNKKSLSIPRLELSSALLLAHLYEKVAK
FT                 NITVATKCRFWTDSTIVVCWLSSSPSRWKQFVANRVSEIQHITKGSVWNHV
FT                 AGEDNPADIISRGMSPAQLQYESRWFHGPKWLMSDEHYWPSSAQINESEFA
FT                 KADLEEKSIVAALPAFPQVRYSVFARR"
XX
SQ   Sequence 7884 BP; 2016 A; 2019 C; 2068 G; 1751 T; 30 other;
     ataaaktgtc tttttgataa aagtccgtcg cgagtttttg cataagtgtc cgaaaactgt        60
     gattacttgg cgcgcgaaca tttggtcctt cgagccggat tacgtctccc ggcgaaggtt       120
     ttcggacacc ggtccgtgaa gttggacatt tttagtgacg gacagtgatg gacgattgca       180
     ctattgtgct ggtgactggt gaatagtgtc accattttcg acgcgggttt gcgccatcgc       240
     gaaggaactt tgcgcgccgt tgcacagtgg ttcgatctag aacaaagtga ggcggaattt       300
     ttcttcgagt gaagtggacg aactgcatag gagcggccga cggtgtttac ccggtcaagt       360
     gcatccagga cgacaacgac gacgacgacg aattgaacgt gcagcgcaag gacggatgcg       420
     accaggaaga aattaaggga gtagtttgca tgtgtggtgg cgttaattgc atggaacgcc       480
     attcctaaac tctgtggcaa tttgttgaaa taaatgattg attgcatgtg atgtgagtcc       540
     aactttattt aagagcagta gccctggtgt ccgctcatca aagtcttgtt tggtctcggt       600
     ttcgctggaa tttgtcggct ttagttttct tccgaggttg gttcccctgc tgctgtcgaa       660
     tttgggttgt aagtctgtcg ttccgggtcg cgttgggtgg ttcgtcgagt cgatcgtgtc       720
     tagttaaagt gcaaagtgca gtksagtggt ksgaatttac tkcgaccgtg cgtgggtgac       780
     ttgtactttt cgattgagta gcctacactg cttaatcgat agtgatagtg ccagtgacgt       840
     cagtgattcg ttgattcacc atgccagacc tacgttcatt gaacaagctg gagcatcagc       900
     tgcggaagtc gctcgaagga atcgagaatt tcgtgcacaa tttcgacgtg aagcgagatg       960
     tacgacaagt gaacgttcgc ctggaggcgc tggagaagat ttacggccaa ttcgtagagg      1020
     tgcgaatgaa gatcgagctg cttttagagg acgctttgga ggatggcgaa ggcgacgagg      1080
     aaacgctaat gcaggagaat gataaggttc gccaagattt cgaggacagc tattattcgc      1140
     taaaggcaga gctgatggcc ttccaatcgc ttgggaccag cgcttcaaga aattccacgc      1200
     ttcaagcacc cgatacgcaa gcggcgactc agtttgcgaa ggtgaaactt ccagaaataa      1260
     agctgccgtc gtttggtgga aagattcacg aatgggtgcc ataccgtgac agcttccgga      1320
     gtctaatcca cgacaacact ctactctccg atgtggacaa gttcacctat ttgaggtcat      1380
     cgttgtccgg tgatgcgctg caggaaatta attcaattga tttgtctgca gccaattaca      1440
     cggtggcatg gaaggcgttg gaaagtcgct acgagaacaa gaagttgatc gtcaaagcgc      1500
     atctcgacgc acttttcacc gtggaagcgc tcaagaagga aagctacgag gggctcaacc      1560
     agttgattgg cgacttcgag aagaacctgc agatgttgga gaagatcggg gagaaaccat      1620
     cagactggag caccattctg gcttacatgg tgtgttccag attggacatg gcaaccctac      1680
     gccactggga aacccatcac aacagcaagg acgtagcgaa gtattcggca ctgatggagt      1740
     ttttgaaggg tcactgctcc gtcctacaat cgattgctcc gtcgaaagct acaagttccg      1800
     tgcaacagcg acagtttcgt ccagcggtgt gccatacttc ttcaagttcg ccccgaagtg      1860
     ccatttctgc agtgagccgc gtcattccgt gtttcagtgc gtgaaattcc agcggatgag      1920
     tattccagag aggattgagg ctgcaaacag gaacaagctc tgccggaatt gtttgtatcc      1980
     tggtcatttc gccagaacct gcgagaaagg ggcgtgtcga cagtgtcatc agaagcatca      2040
     cacactgctg cacactgaac agcctagatc ctccgttcca cccacgcagt caagaccccc      2100
     gacagtcaac caacaatcta gacagccaca atccaagccg ccaacaccga accaacagac      2160
     tcggaccgct aacactgcca acacccaaga ctcacacact cagccagcca cagaacacgc      2220
     caccacaagc caaacacatg tagctctccc aattacaccg acacaaaaca tcattctttc      2280
     gaccgcgcta gtcagcattc aagatcgcta cggcaggtcc gttccagcac gagcactgct      2340
     ggactcgtgt tcgcaacatt gtctcatgac aaagagtttc gctagcaagc tcaagctaga      2400
     cgaaacgcca gtctatctgt cgattcaagg cattggatcg tctcaagcag tgtcaacaag      2460
     gctggtcacc gccgtagtgg gtccgagatc gccgaatatt tcgtcattcg ccgaagagat      2520
     gtctttccac gtgctgccga agctgaccgt gtcgctgcct accgtcagta tcaataccgc      2580
     wgcgtggaat cttccgaatt caacgcttct tgcggatccc aatttcttcg agatgggacc      2640
     gatagacgtc atcatcggag cggaatatta catggagctg ctgaaggagg aaagacggag      2700
     agcaaccgac gacggcccaa ctcttcaaga caccgtattc ggatggattg tttccggtcg      2760
     tattcccgag ggtccagcgg catcgtactc ccttgttcac gtctgctcaa cggcggaaat      2820
     tcaagaccag ctatcgcggt tctgggaagt agagacttgc cagtcaacca gcacgctatc      2880
     cgtcgaggag tcagcatgtg aggagttctt cgacaggacg acatacagaa acgacgaagg      2940
     gaggtacgtg gtcacgctgc cgaagaaaga gaggttgatc cagcagctag gcgattctcg      3000
     atcgacagca atcaagcgtt tcttgggggt agagcgacga ttcgccatga atccggaact      3060
     gaagaagcag tacgcagagt tcatgcgcga atatctggct atgggccata tgagagaggt      3120
     ttccgaggaa gacacgagcg ccccgtcgta ttacttgcct catcacgctg ttctgaagcc      3180
     ggacagcacg acgacgaagc tgcgtgtcgt attcgacgca tcctgcaaaa cgtccaccgg      3240
     ggtttcgttg aatgatgccc taatggtagg ccccgtcgtt caggacgtga tagtggacat      3300
     cacactacga ttccgtaccc accgatttgc cctcgtagga gacgtcgcaa aaatgtaccg      3360
     tatggtactc atgaatgcag cagaccagcg gctgcaaaga atcgtttgga gagacagccc      3420
     ctcggaatca atccgtactt tcgcactcac cacagtcacc tacggtacag cgtccgcccc      3480
     ctacttagcc acgaagtgtc tgcagcgtct gtcagagaaa ggtgaagagt cgcatcctgc      3540
     tgctgctaag gtcctcaaga aggattttta cgtcgatgac atgctgtctg gcgtagacga      3600
     catcgaagaa gggaagcgcc tcgtcagtca gatgaatgat ctgctccaat cggcaggatt      3660
     ctccttgcgg aagtggaatt ctaacagcaa agaattgctg tcagcggtgc cggagggttt      3720
     gagagacgaa cgatcgattc tagaactgga ttcatcgagt gccgcagtca aaacgttagg      3780
     tttaacctgg gagcctagca cggattgctt ccgattcagt tcgccagcgt ggaatgagtc      3840
     cacagcgata acgaagcgtt gtgttctttc ggatgcgtct cgtttgttcg acccgttggg      3900
     actggtaggt ccagtgatca tccaagcgaa gatcttcctg caggacctct ggaagcacga      3960
     ctgcgagtgg gatgaaccgc tcagcccgca gttacaagac cagtggcgtg aatatagatg      4020
     gaatttgacc ggcttagacg gaatcgctgt tccccgatgg gttggaacga gtcgcagtac      4080
     cgaagcggta gaactccacg gcttctgcga cgcgtcgaac aaggcgtatg gcgcatgcgt      4140
     gtacgtccgc accgtagctg cagatgggag tgtaatggta cacctgctaa cctccaaatc      4200
     acgagtagct ccgctcgaga atttgaagaa aaacaagaag tcgctatcca tccctcggct      4260
     agagttgtcg tcggcactac ttctagcaca cttgtacgag aaagtcgcca agaacatcac      4320
     cgttgccacc aaatgtcgtt tctggaccga ctcgaccatc gtcgtatgct ggctttcatc      4380
     gtcgccttcg aggtggaagc agttcgtggc aaatcgcgtc tccgaaatcc agcacattac      4440
     aaagggtagt gtgtggaatc acgtcgccgg tgaagacaac cctgcggata tcatttctcg      4500
     aggcatgagt ccagcgcagc ttcagtacga gtctcgttgg tttcacgggc cgaaatggtt      4560
     gatgtcggac gaacattact ggcccagttc ggcgcaaatc aacgagagcg agttcgctaa      4620
     ggcagacctg gaggaaaagt ccatcgtcgc ggccctcccg gcgtttcccc aagtgagata      4680
     ttcggtcttc gctcgtcgct agtagatcta gttcgactga ccgtttacat tcgacgattc      4740
     aaatggaatt cgtcaccggc gaatcgatcc tgtaggaaag taggcagcat cacttccagg      4800
     aatatgaaga agcgattagg gagctggtaa agctgtctca gcgggaaagt ttcccgcaag      4860
     aattctcaga ccttgccaaa cacggtcagg tacaggattc gtcaagaata tcggcgctaa      4920
     atccccaact tgtcggggtg tattgtgcgt tggcggccgg ttgaaaaacg cggcagtggc      4980
     agatagtagg aagcatcctt acattctcga ccaccggcat cccttcacca aaatcgtcgt      5040
     agtccactac catcgcaaat atctccacgc cggtcagcaa cagatggtat cagcagttcg      5100
     agagcagttt tggccaacga gcgtcagaaa tctcgcaaga caggttgtcc acgaatgtgt      5160
     ccagtgcttt cgtgtgaaac ccaagatcca ggagcaactg atggctgatc tgccccccga      5220
     aagagtcagg ccatgcttcc cgttccagaa ggtaggagtc gactactgcg gaccgtttta      5280
     cgtggtctat ccgcagcgcc gagctcgtcc ggtcaagtgc ttcgtggcag tatacgtgtg      5340
     cctagttacc aaagctgtgc atttggagct agcagcagat ctgtcgacgc aggcattctt      5400
     agcgacattg caacgcttca ctgcacgccg aggtaaaccg tcgctgataa tgtgcgacaa      5460
     cgcgacgaac ttcgttggmg cacgacgcaa gctagatgag cttgcgcagc tttttgcaag      5520
     tcagcaattc accgaagcag ttctacgaca gacgatcgaa gacmgaatcg agttccggtt      5580
     cattccagcc cgctcaccga acttcggtgg actgtgggaa tcagcggtga aatcgttcaa      5640
     gaccctgttc aagcgaacga ttggcacgcg cagtctggaa tacgacaaca tgctcacggt      5700
     gctggctcaa gcagagtcaa tcctgaattc cagaccgctg accccaatca gcaacgatcc      5760
     ggacgatttt gaggccctca cccctggaca ttttttgatc caccggccgc tgacggccat      5820
     tccgggacct gatcttggcg aagttccgga aaacagactt tcggcttggc aaaagatgcg      5880
     gatttcaacc agaggttgtg gaagaaatgg tcggagcagt atctgtccaa cctccacaat      5940
     cggacgaaat ggacgcgaca gagggacaac ataggcgttg gcactatggt tgtcataaag      6000
     gaggagaatt tgccaccact gaagtggcag ttggcacggg tgacagaggt tcacccaggt      6060
     tctgacggca acatcagagt tgtcaccgtt cggaccaaag acggcagtta ccagcgagcg      6120
     atctccaaga tctgtgtgct gccaatacga gataatctat cgtctgctga aggggagaac      6180
     taggactcct ccaacggcgg aggtcgaaag gcctccgcac ccccagttat gttatgtatt      6240
     tgttaaactt tcgaaaaagt aatccgatca tctttctcca gacaaacctc cttccgtttt      6300
     ggttcaacca aaactgcaga cactcaaata caaattatga gtcgtcccgc gtccaatcca      6360
     ccgatattga ggtcggccgc cgcccaatat cggtgccggg ccggccccgc ctcgtgttcc      6420
     gcccggttgg tggtagttgc atgtgcatcg ttgcatgtcc cacgggcagt cgcaagtcaa      6480
     cgctctagca taccgcggga gggcccggct aggatcggaa caagctccga ttggtgccgc      6540
     ggtattcggc gcgggcgggc ggggcaggcg cagtgtttgt cctgaaacta aagctgttcc      6600
     aaaccgcccc cagcccccgc ccgtttgata ttscgaggta cccgagcctg ccacggcgag      6660
     ccggggttaa gggtcgcatt magaggaaga acggtgcgca attcaacctc ctggattcac      6720
     gctatgattg tccacgggta tggccaacct aaggatcgtc actgcatcac gggtccagaa      6780
     tcgtaaccgc cacggagagc atcaataccg aagagtatca acgtcatcga gcaacagggc      6840
     aaatgaaact atcatcgtca gtcagaggga ccgtcggcgc cgctcgggcg tccaccggag      6900
     gccwtagggc ctccgttcag gcaagtcgtt ttcgttttca gcattacatt tcaaaaagca      6960
     ccctctcatt ttattcagag accaccagcg ttacacggga cacggattgc ctcagcatcc      7020
     gttcacacca aatcatccgt tcatcatcac caagtcgaag tcgaaacgtc caagacaaac      7080
     ttcctaaatc agccaagtca gtcggagttc actgaagcgt cgtaacgtct cgtccaaatc      7140
     gtcgtcacca agagtccgga gamgtcatca acccaaatcg ttcaacggaa ccaagctatc      7200
     gtcatcgaag ttgaaattca tcatcgtcga gagcattatg cagtcatcat caagagtccg      7260
     agtacccagc caaatcgtca acatcatcaa gtcmaagcat agtccacgca tcgtmgtcag      7320
     tcsctaaggt taaggtcatc gcgaacgcac gcgagactta gaagtcggcg taawcagagt      7380
     catccaccaa agwcgtcgag gctgaaatca gggatgcamc aawttgagcg gcgtcaaaaa      7440
     tgcaattcmg cwcctacctg cagcacawsc gaagawcgat taccggakmc agcaagtcct      7500
     ggcagacagc aaaatatcga atggaacaag ttcagacaaa acaaattgtc tgccaggtaa      7560
     gttgttccgg ttttacaaaa tcttacttca cgacactata tccacctcca ttctccwccg      7620
     aggaaaacaa caacaccatc gatmgtccta cccaacactg atccacaagc aggctgccgg      7680
     catcgagacc gttggtatat aggccaaggt caactcggtg gctaacatcg tcgcaatata      7740
     tgggtcagca gtaccagcca gcagagcagt acagtgtagt atataagsaa ctgaaaattt      7800
     caatagtttt aaggcaattt tgaaaacatc tgggagttag aaagggaaag tttgaaatct      7860
     agggattcca aggcggccgg cata                                             7884
//
ID   BEL-622_AA-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-622_AA_;
KW   Pao_Bel_Ele104; BEL-622_AA-I; BEL-622_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-296
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 296 BP; 78 A; 68 C; 65 G; 85 T; 0 other;
     tggtcaagca ggacagaaag ggtcaaaagt gagtgaccaa ataagttcca cactacggta        60
     tctgttgtta tctcattttt tcgcatgcat tctcttggtc cgtttcattc tgcggagcca       120
     taccatcgta ggtaccgtag tgtgtgaaag tgtctctacc cgatcgcttc tcgatcgtgg       180
     atcagctggt ccgcacatag caatagatga aatagataac cagaagtaaa tataccgccg       240
     cgagtactac acctcgtccg ctttaagttt caataaaagt tgtttctgtt cgcgca           296
//
ID   BEL-623_AA-I repbase;    DNA;    INV; 6301 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-623_AA_;
KW   BEL-623_AA-LTR; Pao_Bel_Ele155; BEL-623_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6301
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5344-5901] - Integrase core
CC   'ACGG' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..2190
FT                 /product="BEL-623_AA-I_1p"
FT                 /translation="MAASAKLSAILNDDRTASGFNEVVQTEVALTIGAEGN
FT                 IIDATAQGMLLNQTSVEPALGGFIDRTASMLGSIVEIDPNTRNDIPSGVRY
FT                 STVRYPPYHQPLTTESHTLQIPKIQSSLTQRPFSSDKATLPAKPSHIIPPS
FT                 FSRNQAVTSNSNTVVIPSGGVNPANIGQRVKSVTVNSELSHQHRSPADKPA
FT                 YESVHSRRSQTGAAYRVDSENRERLGPQHSVLPTLPVGSIPDVQRGSERQY
FT                 SVAATPAQTWGPTPQQLAARHVMSKELPVFSGNPEDWPLFISSYNNTTQAC
FT                 GYSEAENLARLQRCLKGHALESVRSRLLLPQGVPYVIATLETLYGRPELLI
FT                 HTLLQKVRGVPAPKHDRLDTLIGFGMAVQNLCDHLEAGGQEAHLKNPMLLF
FT                 ELVEKLPANMKLDWSLYKQRCGEVSLREFAQYMSTLVRAATDVTLHYGPRP
FT                 TPPQQRETRPEKGSRDKNFCAAHSEGPSKLKKPGKDDVMDQSTKHTPACLI
FT                 CHDPKHRVKECTSFLTKVWMSAGRSS"
FT   CDS           3094..6300
FT                 /product="BEL-623_AA-I_2p"
FT                 /translation="MAVKRLQCLERRMRSDPVIGDNVHRQIQEYQTKGYIH
FT                 KATKEELQEADPRRVWYLPLGVVLNPKKPSKVRIFCDAAAKVDGISLNTML
FT                 LKGPDLLSSLFGVLCGFREKRVALCADVKEMFHQIRIRKDDRHAQRLLWRD
FT                 DPTQAPEIYLMDVSTFGATCSPCSAQFVKNVNAAEHAKEYPLAAEAIQRKH
FT                 YVDDYLDSADSEKEAIHIAEEVRHVHSLGGFHLRNWLSNSKAVLARVGESD
FT                 SATEKSLQLDRGSSTERVLGLFWRPENDDFTFSTDLVTHVELPTKRQALSI
FT                 VMSPFDPLGFLSFFLIHGKILIQKMWRAKIKWDELIPETLRKQWTDWMEHF
FT                 KHLDKISISRCYFPSHSVKDILSLQLHVFVDASEDAFACVAYLRAEFANEI
FT                 DVAVVAAKSKVAPLKSLSIPRLELMAAVIGARLQSTIIEGHSLHIDQVVLW
FT                 SDSKTVLAWIYSDHRNYRQFVACRIGEILSKTRECQWRWIPSKENVADDAT
FT                 KWGKGPCMSPNSRWFRGPEFLCLSEENWPAGIEAEAHQTDEELRSCLVHRE
FT                 VIVPHRMDWKRFSQWTRLWRATAYVHRYVGNLKRKVKQNELQVGPLTQTEL
FT                 AAAETTIWRWVQNEVFPDEVATLSGERSEQPVRQAKLEPTSKLRKLSPYMD
FT                 VNGVIRMESRIAAATFASFDTRFPIVLPKDHAVTALLIEWYHKKYLHRNGE
FT                 TVVNEVRQRFHIPNLRTVVRKEKKKCVLCKLKLATPAIPRMAPLPAARLKA
FT                 FERPFSYVGVDYFGPIAVRVNRSNAKRWIALFTCLTIRAVHLEIVHSLSTE
FT                 SCKMAFRRFIARRGAPVEVYSDRGTNFVGCSNELEREKKAIDQQLAETFTN
FT                 ANTKWIFNPPAAPHMGGSWERLVRSVKTALAAMYTSRIPTEETLATLVAEA
FT                 ESIVNSRPLTFIPLEREQQEALTPNHFLLLSSNGVAQTSKTLVDSREACRN
FT                 QWNLYRAMVDQFWRRWVREYMPDLTRRTKWFEDVPAIRPGKLVIIVDDQVR
FT                 NGWIRGRVVQVVKGCDGRIRQAVLQTATGLVRRPIAKLALLDIAESKAAPE
FT                 KPEQLTGRGDVT"
XX
SQ   Sequence 6301 BP; 1761 A; 1493 C; 1671 G; 1374 T; 2 other;
     acggtgttgc tgctcaagga attccgaata cccccacgcc aacaaaacta aagaatttgc        60
     cgtcatgccg atggctacac gcagtgctcc aggacgtagg ccgcgctgtc tggcttgcaa       120
     cgggcctgat acgatgcgaa tggtagcatg ttgccaatgt gaaacttggt ggcactacga       180
     gtgtgtgaat gttgatgaaa gcatagccgc accagatcgc acattcatct gtccgcaatg       240
     tcaaagacct gcaccgaccg tcccgaatct gcaacacgcc gcgtctgaaa ccagtcatcg       300
     atgcccctcc aacttgtccg gagccaggtc tgctgtttca tccactccca gcatgagagc       360
     taggagagct cgccttcagt tggaaaagct cgaggcacaa aaagctctaa tggataaacg       420
     tatagagcaa gcacgtcgag agcagctgat taggcatgag caggagaagc agatgcagga       480
     agctgaactg gaccaaatac ggctgcaaat ggaggaaaac atcatcgagg aatcattccg       540
     gtgccgagaa gaggaactgt tggaccaaga gagcgataga ggcagcattt catccgccca       600
     gagcagtgtt agtaaggtgc gtgaatggca gcaagcgcaa aactatccgc gatcctcaac       660
     gatgaccgaa cagctagcgg gttcaacgag gtggtgcaaa cagaagtagc tctcactatc       720
     ggggcggaag gtaacattat agatgcaaca gcacaaggta tgttattgaa ccagacttca       780
     gttgagccag cgttaggagg tttcatagat agaacagcta gtatgttagg gagcatagtt       840
     gagatagatc ccaatactcg caatgatatt ccgagcggtg ttcgctacag cactgtgcgc       900
     taccccccat atcaccaacc actaaccact gaaagccata cccttcaaat acctaaaatc       960
     caatcctctt taacgcaacg ccctttttcg tctgacaaag cgacgttacc cgcgaaacct      1020
     tcccatatca tacctccctc gttcagtcga aatcaagcag ttacgtcgaa cagtaacacg      1080
     gtagtgattc ccagtggtgg agtaaaccca gctaatattg gccaacgggt taaatcagtt      1140
     acagtgaata gtgaattatc tcatcaacac cgaagtcctg cagacaaacc ggcatatgag      1200
     tcggtacatt cgcggcgttc tcagacggga gcagcatacc gagtggattc agagaatcgg      1260
     gagagactgg gaccacaaca ttctgtatta ccgacactcc cagtgggctc gattcccgat      1320
     gtacagcgag ggtcagaacg gcagtactct gtcgccgcca ccccagctca aacttgggga      1380
     ccaacacctc agcagttggc agcaagacat gtgatgtcga aggagctacc agtcttctct      1440
     ggcaacccag aggattggcc cttattcatc agctcctaca acaatacaac ccaggcatgt      1500
     ggttactcgg aagcggagaa tcttgccagg ctacagcgat gccttaaagg acatgcgttg      1560
     gaatcagtgc gaagccgtct attgctgcca caaggtgtac cgtacgtcat cgctacactg      1620
     gaaacgctat atgggagacc ggagctgttg attcacaccc tgctgcagaa agtccgagga      1680
     gttccagcgc cgaaacacga cagattagac acgctgattg gtttcggaat ggcagtgcag      1740
     aacctttgtg accatttgga agctggtggt caagaagccc atctaaagaa tccaatgctt      1800
     ctctttgagc tagtggaaaa actgccagcc aacatgaagt tggactggtc attgtataaa      1860
     cagcgttgcg gagaggtgag ccttcgagaa ttcgcacaat acatgtccac tttggtgcgt      1920
     gccgcaacag acgtaacatt gcattacggt ccgaggccaa cgccgccgca acagcgggaa      1980
     acaagaccag aaaaaggcag ccgtgacaaa aatttctgcg cagcacactc agaaggtcct      2040
     tcgaagctaa aaaagccggg gaaagatgat gtaatggatc aaagtacaaa acatactcca      2100
     gcgtgcctca tttgccacga tccaaagcat cgagtaaagg agtgcacaag ttttctaaca      2160
     aaagtgtgga tgagcgctgg aaggtcatcc tgaatttcgg gttgtgtagg aattgcctag      2220
     gttctcacgg gcggcgaccg tgcaagatat acaagcggtg tgaagtcgat ggatgtcaac      2280
     taaaacacca ccccctacta cattctaagc aatacaagca agaagtaaag cgagatcata      2340
     aggaggaccc gatgccggag tccaaggcag tagccaatca ccattatgcg ggaaagacaa      2400
     ctctcttccg cgtcattccg gtgacgcttt tcggaaacaa tcaatccgtt tctgtgtatg      2460
     cttttcttga tgatgggtca gagcgaactc tggtggagca agaaatcgtg gataagctgg      2520
     gagtaaccgg tgaacatctt ccactatgtc tgcaatggac agctgaggtg aaacgaacgg      2580
     aaaacgagtc gcagcgagtt gcgttgcaaa tctctggggt caacggaatg aaacatgcac      2640
     tgtcggacgt tcgaacggtc aaaaagttga atttaccacg acaatcatta caccatgcaa      2700
     agctggcgga agcatacccg tacttgcatg ggttgcctat tcaagattac gaggaggcgt      2760
     tacctcgcat cttgataggt aatgacaacg ctcatgttac atccacactc aaactgcgcg      2820
     aagggaagcc cggtgagcct attgcagcaa aaacccgatt gggatggacc gtctatggaa      2880
     cgaaccttaa gcaatcggaa caacaggcac actctttcca catctgtgaa tgtcggaatg      2940
     aggacacact acatgactta gtgactcagt tcttcagcgt cgaatccttg ggaattacgg      3000
     ccatcgcatg cccggagtct gacgaagtgc aacgagccaa cgaaattctc aaagcaacca      3060
     ctaagcgagt tggcaagcgg tcgaaacaac cctatggcag tcaagcgtct gcagtgcttg      3120
     gaacgacgca tgagaagcga tcctgtgata ggcgacaatg tacatcggca gatccaggag      3180
     taccagacaa aaggctatat acataaggca acgaaggagg aactacagga ggccgacccg      3240
     cggcgtgtat ggtacttgcc actcggagtg gttctgaacc cgaagaaacc atcgaaggtt      3300
     cgcatttttt gtgacgctgc agccaaagtg gacggaatct cactaaatac gatgctcttg      3360
     aaaggaccgg atctgctaag ctcgctgttt ggagttctct gtggctttcg ggaaaagcgg      3420
     gtcgcacttt gcgctgacgt gaaagaaatg ttccatcaaa tacgaatacg taaagatgat      3480
     cgccatgcgc aaagactact ctggagagat gacccaactc aagctccgga gatctacttg      3540
     atggatgtat ctacattcgg ggctacgtgc tcgccgtgct ccgcgcaatt tgttaaaaac      3600
     gtgaatgccg ctgagcacgc taaggaatat cctcttgcag cggaagcaat tcaacggaag      3660
     cattatgtag atgattattt ggatagtgca gacagcgaaa aagaggcgat acatattgcc      3720
     gaagaggtgc gacacgtgca ctcacttgga ggtttccatt tgcggaactg gctatccaac      3780
     tccaaagccg ttcttgcacg ggtcggggag agtgactctg caaccgagaa aagcctccag      3840
     ctagacagag gaagctccac ggaacgcgtt ctgggattat tttggaggcc tgaaaatgat      3900
     gacttcactt tctctacgga tctcgttacg catgtagagc tgccgacgaa acgccaagct      3960
     ttgagcatcg ttatgagtcc gttcgatccg ttaggattcc tttctttctt cttaatccac      4020
     gggaaaatct tgattcagaa gatgtggcga gcgaagatca agtgggacga gcttataccg      4080
     gagacgctgc gtaagcaatg gactgattgg atggagcatt ttaagcacct ggacaagatc      4140
     agcatttcac gctgctattt tccaagtcat tctgtcaagg atattttatc actgcaactc      4200
     catgtcttcg tagatgcgag tgaggatgcg tttgcttgtg tggcatactt gcgggccgag      4260
     tttgcgaatg aaatcgacgt agcagtagta gctgcgaaat ccaaggtggc tcccctcaaa      4320
     tctttatcca ttccaaggct ggaactgatg gcggctgtga ttggagcgcg tctacagagc      4380
     actattatcg aaggacattc tttgcacatc gaccaagtcg tcttgtggag tgattctaag      4440
     acggtgttag cctggatwta ctccgatcat cgcaactacc gtcaatttgt tgcttgtcgg      4500
     ataggagaaa tactgtcaaa aacacgggag tgccagtggc gatggatacc atcgaaggag      4560
     aatgtggcag acgacgctac aaaatgggga aaaggaccct gtatgtcacc aaatagtcgc      4620
     tggttcagag gtcccgaatt tctttgtcta tcggaggaaa attggcctgc aggcatcgaa      4680
     gctgaagcac accaaacgga tgaagaactt cggtcgtgtt tggtacaccg cgaagtgata      4740
     gttccacatc ggatggactg gaaacgtttc tcgcagtgga cgcgtttgtg gcgcgcaaca      4800
     gcgtacgttc atcgctacgt gggtaacttg aaacgcaagg tgaagcagaa cgagttgcaa      4860
     gtcggtccgt tgacccagac cgaactagct gccgcagaga caacaatatg gcgttgggtt      4920
     caaaatgagg tgtttccaga cgaagtagct acactttcag gagaacggag tgagcaacca      4980
     gtgcgacaag ccaaattgga gccaactagc aaacttcgaa agctgtcgcc gtacatggac      5040
     gtaaacggtg taatacgcat ggaaagtcga atagccgcag ctaccttcgc ttcattcgat      5100
     acccgctttc ccatcgttct gccgaaagat catgccgtaa cggcgcttct aatcgaatgg      5160
     taccacaaga aatatctcca taggaacggc gaaacggtgg tgaatgaggt aaggcaacgt      5220
     ttccacatac ctaaccttcg cacggttgta cgcaaggaaa agaagaaatg cgtattatgc      5280
     aagttgaaac tagcgacgcc ggcaattcct cggatggctc cgctgcctgc tgctagactg      5340
     aaggctttcg agcgtccatt ttcgtacgtg ggagtcgatt actttggccc gatcgctgta      5400
     cgtgtgaatc gaagcaatgc caagagatgg atagcgttgt tcacgtgcct gacaatccgg      5460
     gctgtgcatt tggagattgt acattctttg tccaccgaat cgtgcaagat ggcctttagg      5520
     agatttattg cgcgcagagg agctccagta gaagtgtata gtgatcgagg aacaaatttt      5580
     gtgggatgta gcaacgagtt ggagagggag aagaaagcta tcgatcaaca gcttgccgaa      5640
     acgttcacga acgcgaacac caaatggatt ttcaatccac cggccgctcc ccacatgggc      5700
     ggatcatggg agcgtctagt gagatcggtg aagacagctt tagcggccat gtacacttcc      5760
     agaattccaa ccgaagagac cttggcgacg ttggttgcag aagcggagag tatagtgaac      5820
     tcgagaccac tgactttcat cccactcgag cgagaacagc aggaggcgct tacgccaaac      5880
     cacttcctgt tgttgagttc gaatggwgtt gcgcaaactt cgaaaacatt ggtggactcc      5940
     agagaagcct gcaggaacca gtggaacctg taccgagcta tggtggacca gttttggcga      6000
     agatgggtac gggaatacat gccggacttg acgcgtcgaa ccaagtggtt cgaggacgtg      6060
     cccgctatac gaccgggaaa actagtgatc attgtagatg accaagtacg caacggatgg      6120
     atccgaggac gagtcgtaca agtggtaaag ggatgtgatg gccgtattcg tcaagctgta      6180
     ctgcagaccg caacaggatt agttcgacgg ccgattgcta agttggcgct cctggacata      6240
     gctgagagta aggcggcgcc ggaaaagccg gagcagctta cgggtcgggg agatgttacg      6300
     g                                                                      6301
//
ID   BEL-623_AA-LTR repbase;    DNA;    INV; 556 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-623_AA_;
KW   Pao_Bel_Ele155; BEL-623_AA-I; BEL-623_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-556
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 556 BP; 180 A; 101 C; 98 G; 161 T; 16 other;
     tggatagcgc cggtccctcg aataactctc ggattgatag wwscgcgtcg cttcgatctt        60
     ccacgcctgt caacacttct gctgctgaca ctttgaagcg agtgtcaaac cctckattmg       120
     tkagaaaaac agaagsaaac cttgaackac acgaataatt gcggaatctt gcattttgcc       180
     aagcaattta atatttatct aaacctaawa tttccttatc gtaagtactc tgcttaaaac       240
     gaattatata aaactwattc cgaatgaatt taattatcta gattgggswc caaatctgtc       300
     catcagaaag gctgtattgt atgactcagc agcttagaag tttatggttg taagtaaccc       360
     aaaatttgaa atttataaag aaactattga aatgaaatcg catttatagt aatttagagc       420
     taacagggaa ttcctgattg tttgttggcc aagggtagga gaacggacca aattgtaggt       480
     aatccscaaa ttaattatgt cgaacawata tkaataagaa atgwatttag ctttagcgct       540
     ttcatcaccc ggaaca                                                       556
//
ID   BEL-624_AA-I repbase;    DNA;    INV; 6115 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-624_AA_;
KW   BEL-624_AA-LTR; Pao_Bel_Ele61; BEL-624_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6115
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5170-5706] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..5448
FT                 /product="BEL-624_AA-I_1p"
FT                 /translation="MSTSNPTRQDALSTSLAACIGCKILDSNQKTVTCSKC
FT                 YALWHGSCAGIPDGFDGPWRCNHCSTFCGSVAGSISSTKSTSSARLRLKQL
FT                 QELKALEDKIQLERAERERRFLLEKHSLEAEAEAEETGCGSIRSSASRLRN
FT                 RHRDVNTWVEATNIAKQSLQQTEGFEQPPVGVHTSTPVSDAGAIPKTHPVD
FT                 TRVDDKQQQQVDQSQQNQLNVLNTPLGLPKHMLPPKKPSGILKPTLPAIPS
FT                 ANAQLDAYASQNVGHYTSQPSTHAIPGSVFPSGIGTQCKAMFPSATATDFQ
FT                 SSQPTLPGLLTQQPQSNVIRSSIQLPHPTTTVQSQYRYVPPSSIPGAIPVT
FT                 TTSMFPSLRPLNQSEYVPWNQQASMQYMPNLVPEHSSQSTGGLISAQQLAA
FT                 RQVVSKELPKFSGDPLEWPMFLSAFESTTAICGIQPDENLARLQRSLVGKA
FT                 REMVQSILTLPSAIPEIIATLRDECGRPEQLVHCLLSKVRNAPPPNVNKLE
FT                 TIVTFGREVRNLVTYIEAANLQMHLANPMLLSELVAKLPPSMRLDWGLHSQ
FT                 RTQDASIRAFSDYVSSLKTAACHVSLPSESIHADDSRRAKKEKSGFVNAHA
FT                 LEQEPNNSVSRWKEKLEAKPCLGCHQTDHKVRFCNKFKSLSIAERWTFVEK
FT                 NGMCQRCLVAHGKWPCRTKQPCGIDDCKDLHHKMLHPGKNTQASITTSPSP
FT                 ALVTIHNQKQSSTLFKVLPVRLFGKNKSLNVFAFLDDGSNKTLLENCIANE
FT                 LGLDGEKQSLVLQWTSNVTRREAASKRVELDIAGIGNAHKYHLTDVCTVEE
FT                 LGLPRQSLDYPELSKHFPYLQGLPVSSYQEAKPQILIGLADARLKLALKSR
FT                 ERRDGEPIASKTRLGWTVFGGRRSVPESVQVMVHEITESDENIHDVIKEYF
FT                 DSENFGIIGARPPESPEDQRARKILQSTTKRTTTGRYETGLLWKTDNVEFP
FT                 NSFSMAERRMKCLERRLEKDPDLKKIVNDQLLEYLERGYAHIATDDEIQSA
FT                 DPRRVWYLPLGIVRNPRKPGKVRVVWDAAAKVKDVSLNSMPLKGPDLLVSL
FT                 PSVICRFRQRKFAVAGDVKQMFHQLQIRKEDRHSQRFLYRADPADPPAIYI
FT                 MDVATFGAACSPCSAQYAKNLNATEYQNTFPEAATAIIENTYVDDFLDSRD
FT                 TADEAAQLVIDVREVFSKACFEIRNWQSNSEEVLSRVGEGNPENVKRFSVD
FT                 KTMDSERVLGISWIPETDVFVFNLQVRDDLKHLLYGEIIPTKREVLRVVMS
FT                 VFDPLGFIATYTIHGKILIQDIWRSGIGWDERILPRDFANWQRWIKLSSEL
FT                 SNVSISRCYFPNYAPESLESTELVVFTDASEMAYCCVAYFRIMDRGVLRCA
FT                 LVSAKSKVTPLKPQSIPRNELNAAVMGVRLANVINESHTLPITKRTFLTDS
FT                 KCVISWLRSDPRKYRQYVSFRVAEILDTSRPSEWKWIPTQVNVADKGTKWG
FT                 KCGPSLDPSSEWFTAPEFLFQPSSSWPTKYPDSDENGEELRAVFAYHSTTD
FT                 DCIVKFENFSTFQGLLKRIAMVYHFIHGCRHRVRERTSSSTALLTQEDYMA
FT                 AENGLWRMIQSEKFADEKVSLQANPGRSSNNQCKLGKNSWMFKFSPFLDDN
FT                 GIVRMDSRIDPEAAYFAYDFRNPIIVPREHYVTNLLISHFHQRYGHANTET
FT                 VLNELRLKYYIPKMRSTVKKVVNRCQWCRVYRAKPTPPRMAPLPQPRVSPY
FT                 VRPFTFVGLDYFGPMIVKRGRTNIKRWVALFTCLTVRALHLEVVHTLSAES
FT                 CKMAIRRFLARRGAPQKIYSDNGTNFRGAAKELSDEINAI"
XX
SQ   Sequence 6115 BP; 1726 A; 1398 C; 1496 G; 1492 T; 3 other;
     aactcaaaaa ttacgatgag cacctcgaat cccacaagac aagatgccct atccacatcg        60
     ttggctgcgt gcatcggttg caagatattg gattccaatc agaagaccgt tacctgcagc       120
     aagtgctatg cattatggca tggtagctgt gctggtattc ccgacggttt cgacgggcca       180
     tggcgatgca atcattgttc tacgttctgt ggttccgtag cgggttcaat atcgtcgaca       240
     aagtctacat ccagtgctcg actgagactc aaacagctgc aagagcttaa agctttggaa       300
     gataagattc agctcgagag agctgagaga gagcgcagat tcctattgga aaagcacagt       360
     ttagaagccg aagctgaagc cgaagagacg ggatgcggca gtatcaggag cagcgccagt       420
     cgtctccgaa accgtcatcg tgatgtgaat acatgggttg aagccacgaa cattgcgaag       480
     caaagtctgc aacaaacgga gggttttgag caaccaccag taggtgtcca cacgtctaca       540
     ccagtgagtg atgctggagc aattccaaaa actcatcctg tggatacaag agtggatgat       600
     aaacagcagc agcaggtcga ccaaagtcag caaaatcagc tcaacgtgtt aaatacgccc       660
     ctcggattgc cgaagcacat gctccccccg aagaagcctt cgggcatact gaagccaacg       720
     cttcccgcca tcccatcggc gaacgctcag cttgatgcgt atgctagtca gaacgtcggt       780
     cattatacct ctcagccatc aacacatgct attccggggt cagtttttcc atcggggatt       840
     ggcactcaat gtaaagcgat gtttccatca gcgactgcca ctgatttcca atcatctcaa       900
     ccaaccctgc ctggattact aacgcagcaa ccacagagca acgttattcg gtcttctata       960
     caattacctc atccaactac aactgttcag tcacagtatc gatacgttcc accttcatcg      1020
     attccagggg caatacctgt gacaacaacc tcgatgttcc cgagcttacg tccgttgaat      1080
     caatcagagt atgtaccatg gaatcagcag gctagtatgc agtacatgcc taatttggta      1140
     cccgaacatt cgtcccaatc aactggtgga ctcatcagcg cacagcagtt agcagcaaga      1200
     caggttgtat cgaaagaact cccgaagttc tctggagatc cacttgagtg gccaatgttc      1260
     ttgagtgcct tcgagtccac gacagcaatt tgcggaattc aacccgacga aaatctggct      1320
     cggctccaaa gaagcctggt agggaaagct agagaaatgg tacaaagtat actcacccta      1380
     ccatcagcga ttccagaaat tatagctacg ctgcgcgatg aatgcggccg cccagaacaa      1440
     ttggtacatt gtttgttatc caaggtcagg aatgcgcctc cacctaatgt taataaactg      1500
     gaaacaatag tcacgttcgg tcgagaagtt cgtaatctcg tgacgtacat cgaagctgca      1560
     aatctgcaaa tgcatttagc gaaccctatg ctgctttcag agctcgtcgc caagctgcca      1620
     ccgagtatgc gtctggattg gggcttgcac tcccagcgca cgcaggacgc ttcaataagg      1680
     gcgttcagtg attatgtgtc gtctctgaag acagcagcat gccacgttag tctgccatca      1740
     gagtcaattc atgcggatga ttcccgaagg gcgaagaaag agaagagtgg ttttgttaat      1800
     gctcacgcat tggagcaaga accaaataat tctgtcagca gatggaagga gaagttagag      1860
     gctaagccgt gtcttgggtg ccatcaaact gatcacaaag tacgattttg taacaaattc      1920
     aaaagtctct caattgccga acggtggacc tttgttgaga aaaatggaat gtgtcagcga      1980
     tgcctggttg cgcatggcaa atggccgtgc cgtacaaagc agccttgtgg gattgacgat      2040
     tgcaaggatt tgcatcacaa gatgctgcat cccggcaaaa atacgcaagc cagcatcacc      2100
     acttctccct cgcctgcttt ggtcaccatc cataatcaaa aacaatcttc cacacttttc      2160
     aaagttctac ctgtaaggct ctttggaaag aacaaatcgt tgaatgtatt tgckttcctc      2220
     gacgacggct caaataaaac actactggag aattgcattg ccaacgagtt aggactcgac      2280
     ggcgagaaac agtctctcgt gcttcaatgg acctcaaacg ttactcggag agaagcagcg      2340
     tcgaaaagag tagaactgga catcgctggg attgggaatg ctcataaata ccacctcacg      2400
     gatgtgtgca ccgtggaaga acttggacta ccacggcaga gtttagacta cccggaactt      2460
     tccaaacact tcccttatct tcaaggtctg ccggtcagta gctatcaaga agcgaagcca      2520
     caaatactca tcggactagc ggatgccagg ttgaaattgg ctttgaaatc aagagagcgt      2580
     cgggatggag agcctatcgc ctcaaagact cgattaggat ggacggtatt cggtgggcga      2640
     cggtctgttc cagaaagtgt gcaagttatg gttcacgaaa tcaccgaatc agatgaaaac      2700
     attcatgatg ttatcaaaga atatttcgac agtgagaatt ttggaataat cggagcacgt      2760
     cctccagagt ctcctgagga tcagcgtgca cgcaaaatcc ttcagagcac cacaaaacga      2820
     acgaccactg ggaggtacga gactggttta ttatggaaaa ccgacaatgt tgaatttcca      2880
     aacagtttct caatggctga gcgacgaatg aagtgcctgg aacgtcgttt agaaaaggat      2940
     ccggatttga agaaaattgt aaacgatcaa ctgctggaat acttagagcg cgggtatgcc      3000
     catatagcta cggatgatga aattcaaagc gcagacccgc gacgcgtttg gtatttgccg      3060
     ttgggaattg ttcgaaaccc acgcaaacca ggcaaggtac gagttgtttg ggatgcggcg      3120
     gcaaaagtaa aggatgtctc gctaaactcc atgccgctga agggaccgga cctactggtt      3180
     tcccttcctt cagtaatctg cagatttcgc cagagaaaat tcgccgttgc aggagacgtt      3240
     aagcagatgt ttcatcagct tcagataagg aaggaagatc ggcattcgca aaggttcctt      3300
     tatcgagcag atccagcaga tcctccagct atttatataa tggatgttgc tacatttgga      3360
     gctgcgtgct ccccctgctc agcgcagtac gcgaagaatt taaatgcaac ggaataccaa      3420
     aatacatttc cggaagccgc cacagcgatc atcgaaaata cgtatgtgga tgacttcctt      3480
     gacagccgcg atactgcaga tgaagccgcc caattggtaa tcgatgttcg agaagtcttc      3540
     agcaaagcgt gttttgaaat ccgaaactgg cagtccaact ctgaagaagt tttaagccgc      3600
     gttggggaag gaaaccctga aaacgtcaaa agattttccg tggacaaaac catggattcc      3660
     gaacgcgtat tgggaataag ctggattccc gagacagatg tattcgtttt caacttgcaa      3720
     gtgcgtgatg atctcaaaca tttgttatac ggtgaaataa taccgaccaa gcgggaggtg      3780
     ctcagggtgg taatgagtgt cttcgaccca ctcggattca ttgccaccta cacaatccat      3840
     ggcaagatcc tcatccaaga catttggcgg tctggcattg gatgggatga acgaatcttg      3900
     ccgagggact tcgccaactg gcagcgatgg atcaaactat cttcagagct gagcaatgtg      3960
     agcatttcga ggtgttactt tcccaattat gctccggaga gtctcgaatc aacagagtta      4020
     gttgtgttca ccgatgccag tgagatggct tactgttgcg tcgcttattt tcgcataatg      4080
     gatcgagggg ttctgagatg tgcgttggta tctgcgaaat caaaagtaac ccctttgaaa      4140
     ccgcagtcaa ttccacggaa tgaactaaat gctgctgtga tgggagtacg gttggcgaat      4200
     gttataaatg agagtcacac tttgccaatt acaaaacgaa catttctgac cgattccaaa      4260
     tgtgtaatat cttggttgag atctgatccg cgaaaatatc ggcaatatgt atcatttcgc      4320
     gtcgcagaaa ttcttgatac tagtcgccct tcagaatgga aatggatacc aactcaagtg      4380
     aatgtggcag ataaaggtac aaaatggggc aaatgcggac cgtcactcga ccctagtagc      4440
     gaatggttta ccgctcctga atttttattc caaccatcga gtagttggcc aacaaaatac      4500
     ccggattcag acgaaaatgg tgaggagctg agggcagttt ttgcttatca tagcacaact      4560
     gacgattgca ttgttaagtt cgaaaacttt tcaacatttc aaggcttact taaaagaatt      4620
     gctatggtat atcatttcat tcatggatgt cgccatcgtg tacgtgaacg tacatcatcg      4680
     tccaccgcgc tgttaacaca agaggattac atggctgcgg agaacggtct ttggcgaatg      4740
     attcagtcgg aaaaatttgc cgatgaaaaa gtttctcttc aagcgaatcc tgggcgttca      4800
     tcaaacaacc agtgcaaact agggaaaaac agttggatgt tcaaattttc accatttctc      4860
     gacgacaacg ggatcgttag gatggatagt cgaatcgatc ccgaggccgc ttattttgcg      4920
     tatgactttc gtaatcctat tattgttcca agagaacact acgtcaccaa cctgttgatc      4980
     agtcactttc atcaacgtta cggacatgcc aacacagaga ctgtgcttaa tgaactgcga      5040
     ctgaagtatt acatccccaa gatgcgatca acggtgaaga aggtagtcaa ccgatgtcaa      5100
     tggtgccgtg tgtatcgtgc taagccaaca cccccaagaa tggcaccgtt acctcagcca      5160
     agggtaagtc cctacgtacg tccttttacc tttgtgggcc ttgattattt tggaccaatg      5220
     atcgtaaagc gtggtcggac taacatcaaa cgttgggttg cactttttac gtgcttaact      5280
     gtgagggcgt tgcatctgga agtggtgcat actttgtcgg ccgagtcgtg caaaatggct      5340
     attcggcgct ttttggcacg acgcggtgca ccacaaaaga tttatagcga caacggcacc      5400
     aactttcgcg gagctgccaa agagctttca gatgagatta acgctatcma ccgagagatt      5460
     tcaggaacgt tcacgaatgc tgatactgaa tggcacttta accctccggc tgccccacat      5520
     atgggcggag tgtgggagag gaaagttcgt tctgtgaagg agggattgaa agtgctttcg      5580
     cataaaaggc atttggacga tgaaggcttc atcacattgc tggcagagat agaaatgatt      5640
     gttaattcgc atcctttaac gttcgtgcct ctggagtcac caggacaacc cgttctgact      5700
     ccaaatcatt tcttaatgat gagttccagt ggagttaatg ccgaatctag aatcccgata      5760
     caagagtcca ctgctttgag aacgaattgg aagcttatgc tgcacttaac tgaccagttc      5820
     tggaaacggt ggatcaaagc ttatctaccc acgatcgcca ggagaacgaa gtggtttgca      5880
     ggggtgcgtc cattaaaaga aggagatctt gtwatcattg tggacgagtc cgtgcgaaat      5940
     gggtggcaac gtggtcgtat tttgcgggct catttggcac cggatggaca ggtacgaaaa      6000
     gtagatgttc aaacggagtc tggagttgta agccgtccgg ctataaaggt agctctgctt      6060
     gagatattgg aggaaggtaa gaccacctaa cctggtggca ttacgggccg gggtg           6115
//
ID   BEL-624_AA-LTR repbase;    DNA;    INV; 608 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-624_AA_;
KW   Pao_Bel_Ele61; BEL-624_AA-I; BEL-624_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-608
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 608 BP; 189 A; 101 C; 109 G; 208 T; 1 other;
     tgacgattat tgggacccct acggtacagc gtcgccgcac tatgtattgt catcttctgg        60
     cagcctacgt cagtcgagag gaaaagtgaa ttgtcattgt aaacatataa catattgaac       120
     tagttggaga ttagtggagt ttattataat ttacgatatt agttactgtt ggcatataaa       180
     aacaaataat ttagcgttat ctttgattaa cggagctgta agtttgccag aatatkaatc       240
     tactgttatg ttatcatgac tattactatg tacttacatg caaacaatgt tgcttacagg       300
     ctttccctga tttgtacaat cagccagtaa ctattactag cgagtggatt taaaaattac       360
     acggttactt agttaatatg taggtatgtc atgaatttat agctaggcga tattaatatg       420
     aattttacca tcgctagctc cctaacctca ttcgactttg tgggattctt aggtgtaaga       480
     tcaaatgagt tgcgaaaact aatttgtaag tactttatta tacgtaagct actttttcta       540
     aacaataaaa cattatttca gttgagtctc tctcacacca cgaaaggact gcgaaaagtt       600
     tctttaca                                                                608
//
ID   BEL-625_AA-I repbase;    DNA;    INV; 7190 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-625_AA_;
KW   BEL-625_AA-LTR; Pao_Bel_Ele108; BEL-625_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7190
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5103-5684] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1156..2823
FT                 /product="BEL-625_AA-I_1p"
FT                 /translation="MFRDTFRSLIHLNGQLNSMDKFTYLRTSLTGDALKEI
FT                 NTIELSAANYEVAWKVLLERYENKKLIVKAYLDTLFSLEPLKKESYDGLNH
FT                 LVSEFEKNLQMLDKVGEQTAQWSTILAYMLCARIDTATLRLWEAHHNSKEV
FT                 PKYQDLVTFLRNQCAVLQSIAPSKSTSSDQRPTKFAVCHAVVKMSNKCPFC
FT                 GEFWHSPFHCNKFQKMKVTERNEAVMRSKLCRNCLHPGHISRTCDKGVCHH
FT                 CQQKHHTMLHFNPVRSSVPPAQTRSQEASQPQRQPQSNPQQPNQQAHTQSN
FT                 NAPTHTANSQINRPQPSTSQASTSHNYVALPKTPTHNILLSTALVRVKDRF
FT                 GNVLLARALLDSCSQHCLMTKEFSNKLKFRVSPTFLSVQGIGSAQSVSTKR
FT                 VSAEVSPRSRMISPFEEEMQFFVLPKLTVSLPTSSFSPSEWSLPETALLAD
FT                 PDFHESGPVDVIIGAEHYLDLLADGRLKATENGPTLQNTVFGWIVSGRVPD
FT                 CPISVSRSIVNVCSTAELQDQLTRFWEIETCRSISTHSVEESACEENLRRQ
FT                 LYATIREDS"
FT   CDS           2976..6044
FT                 /product="BEL-625_AA-I_2p"
FT                 /translation="MGHMVEVTEDCEGVAYYMPHHAVFKPESTTTKLRVVF
FT                 DASCKTSTGVSLNDALMVGPVVQDELININLRFRLHRYAVVADVAKMYRMI
FT                 AVSEHDRKLQRIVWRGSSDEEIRTFELTTVTYGTASAPYLATRCLKQLAEE
FT                 GEESHPMAAAVLKEDFYVDDMLSGVDEIDEGKQFVEEMVDLMQSGGFTLRK
FT                 WNSNCEEILRHVPEHLHDDRTILTLDTSDSTVKTLGLQWEPRSDVYRFSTP
FT                 KWNESDAVTKRTVLSDISRLFDPLGLIGPVIVQAKLFVQELWKRECSWDSP
FT                 LSEDMRERWLEYRRNMIGLDGIRIPRWIGVTTSRESVELHGFCDASRKAYG
FT                 ACIYIRTVAADGTVDVRLLTAKSRVAPLENLKKKKKSLSTPRLELSSALLL
FT                 AHLYEKVIDSIHMTVESHFWTDSTIVKYWLSSVPSRWKEFVSNRVSEIQHI
FT                 TVGGTWNHVPGMENPADIISRGMAPPQLQYESLWWRGPHWLLQERANWPTA
FT                 EPDTSELHPSLLEEKGVISALLPSTEPSEIFGLRSSLTELVKLVAFLRRFC
FT                 FNARSANRDNRKQGQLTLVERDEALRLLVRLAQQESFPQEYTELSRGRSVQ
FT                 DSSRIASLNPEMVDGIICVGGRLRNAKVPSSRKHPYIIGHHHPFAMLVMTE
FT                 YHRDLFHAGQQLLVSTVRGKFWPTNARNLARKVIHDCVRCFRVKPKIHEQL
FT                 MADLPSERVTPCSPFQRVGIDLCGPFQVKYPQRSARPVKCFVVVFVCLVTK
FT                 AVHLELVADQTSQAFLASLRRFSSRRGKPSLIMCDNGRNFVGAKRELAELR
FT                 QLFVNQQFQNAVVQESSKDHIEFRFIPARSPNFGGLWESAVKSFKTLLKRT
FT                 IGSRTLQYDEFQTLLTQIEAVLNSRPLTPVSNDPSDYEALTPGHFLIQRPL
FT                 AAIPEPNLDGLPENRLSAWQTVQHFVQLLWRNWSTEYLSNLHNRTKWTKKR
FT                 DNVKIGTMVVLREENQPPLSWLLGRITEVHTGADGNIRVVTVRTKDGSYKR
FT                 AISKICILPISDNVQSA"
XX
SQ   Sequence 7190 BP; 1893 A; 1732 C; 1880 G; 1670 T; 15 other;
     aacatttttg gtccttcgag ccggatcgag gacggcagga tcggtttgcg gatacgaagc        60
     ccgcttgtgt gaatcagtga aaaaaggaaa gattgtgagc ttgctactgt gtgggcgatt       120
     tgcattgcga aagtcgcaaa gaaaaagtaa acagtgtcga tcgtgaacgg cggtgagatt       180
     tcgtgcgaag tgaagaagaa agtttgccta ccgcctgtga acaaaggtcg gcgtgaagat       240
     ttcgtgccat tttggacgcg gtaaatcgcc atcgcaggag gaattcgagc gccatcagga       300
     ggaacaaagc tgctaacgac cgggcgccat cggagttgca gttgcagtcg cagggaagta       360
     cwgtgtaacg gtggcttggt gcatgtggcc aaccgaaata aggcagaata aatccaktga       420
     atgcatgtga gttttttccg tttggcaagg tgcatgagtt gtgtccgctt tctgttggtc       480
     tcgaagttcc gcttgggtct gttggttgcc ttttcttctg tggttgatct cccctcgctg       540
     ctgtcgttgg gttgtacagt tctaaatctg tctactttaa acgcgatcgt ggaacgtcga       600
     gtagatctgt cacagtgaaa gtgtaccggt gatagtgatt mgtgcttggt gattgaattt       660
     gatttgacca gtgcagtgat ggccagtgat ttgcgtgctt tgttgaagcg tgaacgcttg       720
     cttcagcaaa aggtgacaat cgtggagaag tttgtggccg ctttcgacaa ggatcgtgat       780
     gagtgtgaag ttgaagtgcg actcaagggc ttgaacgaag tgtatttgga gtttttcgtg       840
     ctacgtgaga agatagagct gctaatggaa gacgaagagg aagaagagga ggatgaagac       900
     gagagcgatc tgttgaagaa gggttcttct ggcggaaaag atgcgcacac ccgtgagcag       960
     gaaaacttcc gtgtagccga agaattcgag aaccgctact gtaaggtgaa atcggccctg      1020
     ctmaaactgc ttccacccaa kgatccggtc aggcgcgact gtggaatacc agccgatcaa      1080
     accgcagcgc attccaaggt gaagttgccc gaaattagtt tgcccacgtt tagtggcaaa      1140
     ttaggagaat gggtgatgtt tcgcgacacc ttccgcagct tgattcatct gaacggacag      1200
     ttgaactcga tggacaaatt cacctacctk cggacgtcgc ttacgggaga tgctctgaag      1260
     gaaatcaaca ccatcgagct ttcggctgcc aattacgaag ttgcgtggaa ggttctcctg      1320
     gagcgctacg agaataagaa actcatcgtc aaggcgtatt tggatactct gttttcgctg      1380
     gaaccactca agaaggagtc gtatgacgga ctgaatcatc tcgttagcga gttcgagaag      1440
     aatttgcaga tgctggacaa ggtaggcgag caaacagccc agtggagtac cattctcgcc      1500
     tacatgcttt gcgctaggat cgatactgcg acgttgcgtt tatgggaagc tcatcataac      1560
     tccaaagaag tgccgaaata tcaggatttg gtgacattcc tgcgcaacca gtgcgcagtg      1620
     ttgcagtcaa tagctccgtc gaagtctacc agctccgatc aacgtccgac gaagtttgct      1680
     gtgtgtcatg ctgtggtgaa gatgtccaac aaatgtccat tttgcggcga gttttggcat      1740
     tctccgttcc attgcaacaa gttccagaag atgaaggtca cggaacgcaa cgaagcggtg      1800
     atgagaagca agctgtgtcg aaactgcctg catcctggtc atatctcaag aacatgcgat      1860
     aaaggtgtct gccaccactg tcagcagaaa caccacacca tgctccactt caacccggta      1920
     agatcctccg ttccacccgc gcaaacgcga agtcaagaag ccagccaacc ccaacgtcaa      1980
     ccacagtcca acccacagca accgaaccaa caagcacaca ctcaatcaaa caatgcacct      2040
     acacacactg ccaactcaca aatcaatagg ccacagccta gcacaagtca agccagcaca      2100
     agccacaact acgttgcact acccaagaca ccaacacaca acatcctctt gtcaacggca      2160
     ctcgtacgag ttaaagaccg ttttggaaat gtcctgcttg ctcgagcttt gttggattct      2220
     tgctcccaac actgtctcat gactaaggag ttctcgaaca agctcaaatt tcgagtttca      2280
     cccacctttt tgtccgtgca aggtattggg tctgcacaaa gcgtatccac caagcgagtt      2340
     agtgctgaag tttctccaag gtcgcgaatg atttctccgt tcgaagaaga gatgcagttt      2400
     ttcgtcttgc cgaagctgac tgtgtcgttg cctacctcca gttttagccc atcggaatgg      2460
     agtctgccgg aaacagcact cttggcggat ccagacttcc atgaatccgg accggtggat      2520
     gtaattatcg gagcagaaca ttatttggat ttgctggcag atggacgact gaaggcgacg      2580
     gagaatggac cgactttgca gaataccgtt tttggatgga tcgtctctgg ccgagtgccg      2640
     gattgcccaa tcagcgtatc ccgttccata gtcaacgtct gctcaactgc ggagctccaa      2700
     gaccagctga ctagattctg ggaaattgaa acttgtcgtt ccatcagtac acattccgtg      2760
     gaagaatctg cttgcgagga gaacttgcga agacaactgt acgcgacgat acgggaagat      2820
     tcgtagttgc tctgccgaag aaggatttcc tcatcgaaaa attgggtgaa tcaaggtcta      2880
     ctgcgatcag acggttgaac agtttggagc gaagattgtc agcggactcc gaactgcagc      2940
     accagtactc cgagttcatc caagaatatc tggacatggg acacatggta gaagtcaccg      3000
     aggactgcga gggagttgca tactatatgc ctcatcacgc tgtcttcaag ccggagagca      3060
     caacaaccaa acttcgagtg gtgtttgatg cctcctgcaa aacctcaaca ggagtttcgt      3120
     tgaacgatgc gttgatggtc ggtcccgtcg tacaagacga gttgatcaat attaatctcc      3180
     gattccgtct ccatcgttac gccgtcgttg ctgatgttgc aaagatgtat cgcatgattg      3240
     cagtttccga acatgatcga aagctccaga ggatcgtgtg gagaggtagc agcgacgaag      3300
     aaattcgaac gtttgagttg acaaccgtca catacggtac tgcgtcagct ccgtatctcg      3360
     ccacgaggtg cctgaaacaa ttggcggaag aaggagagga gtcccatccc atggcagccg      3420
     ccgtgctaaa agaagacttc tacgtcgacg atatgctgtc cggcgtggac gagattgatg      3480
     aaggcaagca gttcgtcgaa gaaatggtgg atttgatgca atccggaggt ttcacgctga      3540
     gaaagtggaa ctctaattgc gaagaaattc tgcggcacgt tccggagcat ctacatgacg      3600
     atcggaccat tctcacgctg gatacaagcg attctactgt gaagacacta ggcctacagt      3660
     gggaaccacg atcggatgtc tatcgcttca gcactccgaa gtggaatgaa tcagatgcag      3720
     taacgaagcg gacagttctg tccgatatct cccgtttatt cgatcccttg ggattgatcg      3780
     gcccagtcat cgttcaagca aagttgttcg ttcaggaact ctggaagcgg gaatgtagct      3840
     gggacagtcc gttgagcgaa gatatgagag aaagatggct tgaatatcgc agaaatatga      3900
     tcggcttgga cggaataagg attccacgtt ggattggcgt tacaacttct cgggagtctg      3960
     tagaattgca tggtttctgc gatgcatcca ggaaagcgta cggtgcgtgc atctatattc      4020
     gaaccgtcgc tgcagacggt actgtagacg tacgattgct gacagcaaag tctcgagttg      4080
     ctcctctcga gaacctcaag aagaagaaga aatcgctttc cacaccacgg cttgaacttt      4140
     cctcagcgtt actactcgca catctctacg agaaggtgat cgacagcatc cacatgaccg      4200
     tggagtcgca tttttggacg gattccacga ttgtgaagta ctggctatcg tcagttccct      4260
     ccagatggaa ggagttcgtc agcaaccgag tatcggagat ccagcacatc accgttggcg      4320
     gcacctggaa tcacgtccct ggaatggaaa acccggcaga tatcatttct cggggaatgg      4380
     cacccccgca gctgcagtac gagtctctct ggtggcgtgg gccgcactgg cttctccaag      4440
     aacgagcaaa ctggccgaca gctgagccag atacaagcga actgcatccg tcgctgttgg      4500
     aagaaaaggg agtcatttcc gcattactgc ccagtacgga acctagcgaa attttcggtt      4560
     tacggtcttc gctgacagag cttgtaaagc ttgtagcttt cctacgacgg ttctgcttca      4620
     atgcaaggag tgcgaatcgt gataatcgca agcaaggtca actaacgctc gtcgaacgcg      4680
     acgaggctct tcgattgcta gttcgcctag cacagcaaga atcctttccg caagagtata      4740
     ccgagctgtc gcgtggtcgg agtgttcaag attcctcgcg aatcgcttcg ctaaacccag      4800
     aaatggtgga cggcattatt tgcgttggcg gccggttacg gaacgccaag gttccgtcga      4860
     gtaggaaaca tccgtatatc atcggtcatc accatccatt cgccatgctt gtcatgaccg      4920
     aatatcatcg ggatctgttc catgcgggac agcaactact agtttcgact gttcgcggca      4980
     agttctggcc gacaaacgcc cgaaatctag ctcgaaaggt gatccatgat tgtgtacgct      5040
     gcttccgtgt caagccgaag attcacgagc aattgatggc cgatctacca tcggagagag      5100
     ttacgccttg tagtcccttc caacgcgtcg gcatcgatct ttgtggaccg tttcaagtca      5160
     aataccccca gcgttctgcc cgtcccgtga agtgttttgt cgtcgttttc gtttgcctgg      5220
     taacgaaggc agtccacctg gagttagtgg ctgaccaaac atcgcaggca ttcctggctt      5280
     ccctcagacg gttctcgtct agacgtggaa aaccatcgct aatcatgtgc gacaacggca      5340
     gaaatttcgt cggagctaaa cgcgagttgg cagaattacg gcagcttttc gtcaaccaac      5400
     agttccagaa cgccgtggtc caagaatcgt cgaaagacca cattgaattc cgcttcatac      5460
     cagcccgctc cccaaatttt ggaggattgt gggagagcgc tgtaaaatcg ttcaaaacgt      5520
     tgctgaaacg aacgataggt tcaaggacgt tacagtacga cgagttccag acgctgctca      5580
     cgcagatcga ggcagttttg aattctcgtc cgcttacacc agtcagcaac gatcccagtg      5640
     attatgaggc actaacaccg ggccattttc tcatccaacg tccgttggca gcaattccgg      5700
     agccgaacct tgatggtcta ccggaaaacc gtttgtctgc atggcaaacc gtgcagcact      5760
     ttgtgcaact tttgtggagg aattggtcga ccgaatattt gtccaacctg cataaccgca      5820
     cgaagtggac caagaagcgt gacaacgtga agataggaac gatggtggta ttgagggagg      5880
     agaatcagcc accgttgagt tggcttctgg gtcggataac cgaggtacac actggagcag      5940
     acggaaacat tcgggtagtg acagtccgaa cgaaggatgg cagctacaaa cgagcaatct      6000
     cgaagatctg catcctwcca atcagcgaca atgtkcaatc mgcatmaggg gagaactagg      6060
     actcctccac cggcggaggt cgaaagacct ccgcagacca gttaagttaa gtattgttta      6120
     gaatttcaaa aagttaatcg gctcattttt cattcgtagc cacattccgt cctcgtttca      6180
     agcccaagaa acgatggaag tcactattcc gatccggtct ctccaattat cgaggtaatc      6240
     tgttttgttc tggtggtggt acgttctgca tgaacggtgc atgaagcagt cgtgctgaac      6300
     ttagttcggc aatattattt tgttccgtga agtcagtcat ctcggcagtc gtagactgca      6360
     caattcgaaa ccctgctaac cacaatcaca cgcttggcta tttgaggtac gagtgtgcga      6420
     actcgcaacg gaggtagaag agcgctattc gtcctcccgg aatcaacgaa gaggtcgtca      6480
     amgagtatgg ccaactcgaa caacggtctc gaatcggaaa tggttccacc agcacatttg      6540
     tagttcgcta gcaagtaccg acgatcgcca ctgtgacgtg taggggtatc atcagcgcct      6600
     ggaggcgccg cggaggccag gaggcctccg ttccaggcaa gtctctgttt tgtccagtaa      6660
     ttcagtttaa aaagcacccg ttcatatgat tcatagatct accgcggcga ggcgagggag      6720
     cccgtcttac cgacgacgaa tcaccaccga cgagaacaag tcacccagtc aagcaagtca      6780
     gaagtccaac cgcatccgtt tatccgccaa gagtcgwaga gcagcagatc cgtcagccta      6840
     gagagaagaa gaagtsaagt ccgcagcagc aaggatcgtc cagaatccag atcgaagtcc      6900
     agcaaccatc cgaaaccgtc atcgtctctg caagcaacca aagcgtcaac agcaacagca      6960
     agccaatgtt taccaccgag tatgggtcat tcggcatcga agaagcagca acacaatgcg      7020
     tccagcacca gtagcagtag gagtacggtc aacccggcga ccgagagtgt aaatagtaga      7080
     ttaagagtaa aaagtgaatt cgtatcaaaa caaagcagta magagtagat agaagttagt      7140
     gtaggagtag gtagttgwtt gaaatcgccg agatttcaag gcggccggca                 7190
//
ID   BEL-625_AA-LTR repbase;    DNA;    INV; 377 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-625_AA_;
KW   Pao_Bel_Ele108; BEL-625_AA-I; BEL-625_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-377
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 377 BP; 102 A; 77 C; 96 G; 102 T; 0 other;
     tggctacgcg agggttaatt gagagcaatg agaagtagca aacatgttcc acaggtagcg        60
     atactgttga tccctgtctg tcgtacgctt ttaagctacc cctttcgttg cgagatagca       120
     catgatgaag agatggaagc aatctgatgg gagcagtcga tctctcagca gccagctgat       180
     cgtgtacata ggagaataaa gttagttact agtagaccgc cgggaaatat acgcctcgtc       240
     cgttcagtcc gcaataaagt tgtttttatc cgcgaatagt tgtgttaatt aattgccgga       300
     ataaagtgat ttctacggag tgaaattgag gactagtttc tacggtatcc gaaatcgatc       360
     cgtttcccgc gcgcgca                                                      377
//
ID   BEL-626_AA-I repbase;    DNA;    INV; 6909 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-626_AA_;
KW   BEL-626_AA-LTR; Pao_Bel_Ele210; BEL-626_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6909
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5950-6519] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..4223
FT                 /product="BEL-626_AA-I_1p"
FT                 /translation="MPRKTRSQTKSKSKVSAANWQRDNDTRATNDIPDVNN
FT                 ALSAAVSDLVHPEENISLARMPQVRFAAAGVDVECDDRYDCVVCDQPNNAD
FT                 QCMVQCRKCTNSYHFDCAQRSSGLKGNKDTFLCTSCVPRNTGPTTSSITGL
FT                 SDTSSTRRARLARELELLEEARKLEEDAQREKLERERQINEKAAREKIERD
FT                 KEYLARKRELLNQQDEADEVASLRSNHSIRSSTRRVEDWVVKQTTSNLGSA
FT                 VAEDTSTSADPMHHVAANPIDNRTQYRSSTPVRDVLPGNKRFTIKHEPFDV
FT                 DLISAARTTGSITIGDNELDEAIGGSLPADSNRVSSVISLVDLKPLQNMLE
FT                 EQEAIVSNHGTRPEAPKSLALPYSQWQSETGYLRKTKELEQRHQKENEIRR
FT                 KRELELVNQIRQLQLQKEADIQQRNEYEADVKKQLQLFNDRQNAMDLQRQR
FT                 DLEQRDAEINRLRETEHSLKIQLHSLSLALQEKDVSRMQNRNAGEVVPNAV
FT                 PAGQDRFQQIICPHPEELIVNSTRFPNKESTVNPNLVSATPASPHEINETP
FT                 QPQPYLDHQFLNTSLPIGGSINDNLLPHTHYDHQTLNISTPRGGPSTSFNN
FT                 IPTTQNAETYAYHQFEPAMPSNIRGNCVQQDVFRPSPEHLAARQVLSKELP
FT                 TFTGDPVDWPLFHSSYHHSTQACGYSDFENLLRLQRALKGAAKDAVSSFLL
FT                 HPSTVPQVMSTLQTLFGRPEQIVHNLIEKVRATPPPKPDRLETLVTFGLAV
FT                 QNLCGHLKAVGLNWHLSNPSLLQELVDKLPANVKFNWAMYQQQFPVVDLNV
FT                 FGEYMTRVTSATSSITLTNMQQKIVKDDRAKAKEKAFVNAHTTGEKDSEQQ
FT                 INEDGTHLRTEQRPDLKMEQTKKCPGCKVEGHQASECEKFKALSLDDRWNL
FT                 VKNNKLCRRCLTSHLRWPCKAEACGLNGCQKLHHRLLHYDPATELKQPERS
FT                 TNATVTIHQSITTSMLFRVLPVTLYGKFGEVNTFAFLDDGSSVTLVEEEIA
FT                 RALGLDGPRESLCIQWTGGINKGIADARMVQMEISAQGSEKRYKIGEAYTV
FT                 DKLGLPRQSLDFEEISERFKYLRKLPVKSFQSAVPGILIGIDNVHLLATLK
FT                 LREGRIQEPIASKTRIGWAVYGRIQGGELMQHRQLHICKRPSLTELHDYVQ
FT                 EFFSLENLGIAAAPALESAEEERARKILVESTVRTNCGKFETGLLWKNDYV
FT                 ELPDSRPMAERRLKCLEKRLQRNSTLYEVVRNQIMDYKLKGYVHEATKDEI
FT                 ESFDPRRTWYLPLGVVTNPKKPGKVRLVWDAAAQVNGTSLNDELLTGPDLL
FT                 TPLLAVMFQFREREVAISADIMEMFLQILIRPEDRSALLFLWRDSPEQPIR
FT                 VMVSNVAIFGATCSPVQSQFVKNLNASVV"
XX
SQ   Sequence 6909 BP; 2090 A; 1511 C; 1674 G; 1585 T; 49 other;
     agagctccga ataacgtgaa caaaactcaa gaatttaata atacatcatg cctagaaaga        60
     cgcgctcgca aacaaagagc aaatcgaagg tgtcggcagc aaattggcaa cgagacaacg       120
     atacacgtgc tacaaacgat attcccgatg tcaacaatgc attgagtgct gcagtgagtg       180
     acctagttca cccagaggaa aatatatccc tggcccgtat gcctcaagtg agatttgcag       240
     cagcgggcgt tgatgttgaa tgcgatgatc gttatgactg cgtcgtttgt gatcagccaa       300
     ataatgctga ccaatgcatg gtacaatgtc gaaagtgtac caattcgtac catttcgatt       360
     gtgctcagag aagtagcgga ctgaagggta ataaagatac gtttctatgc acgtcgtgtg       420
     ttccccggaa cactggccca acaacaagtt cgataaccgg actgtcagat acttcgagta       480
     cgcggagagc tagattggcc cgtgaactcg aattgttgga agaagcaagg aagttagaag       540
     aagatgctca gcgggagaag ttagaacgcg agagacaaat taacgagaag gcagctaggg       600
     agaagatcga gcgggacaag gagtacctgg cgagaaaacg agagcttctg aaccagcaag       660
     acgaggcaga tgaagttgca agcttgagga gtaaccattc tattcggtcg tcgacaagaa       720
     gagttgaaga ttgggtcgtc aaacagacga caagcaatct tggttctgct gtagccgaag       780
     acacgtcgac atctgcagat ccaatgcatc atgtagccgc aaatccgata gataatcgaa       840
     ctcagtatcg tagttcaact cccgttcgag acgtactccc aggaaacaag cgcttcacta       900
     ttaaacacga gccctttgac gttgatctta tttccgctgc ccgaacgacc ggtagtatca       960
     cgatcggtga taacgaactc gacgaagcaa ttggaggaag tttaccggcg gatagcaacc      1020
     gagtttcgtc tgtcatttca ttagtggacc ttaaaccact tcagaacatg ctagaagagc      1080
     aggaagcaat cgtttcaaac cacgggacta ggccggaggc tccgaaaagt ttggccttgc      1140
     catacagcca atggcaaagt gaaactggtt atctgcgcaa aaccaaagaa ctcgaacaac      1200
     gtcatcaaaa agagaatgaa attcggcgta aacgagagtt ggaactagtc aatcagatca      1260
     gacagttgca actacaaaaa gaggcggaca tacagcagcg taacgagtac gaggctgatg      1320
     tgaaaaaaca actgcaactg tttaatgaca gacagaacgc tatggactta caacgacaac      1380
     gtgatctgga gcagagggat gccgaaataa atcgtctgcg agaaacggaa cattcattaa      1440
     agatacagct tcactcacta agcctggctc tgcaagaaaa ggacgtctcc agaatgcaga      1500
     acaggaatgc cggggaagtg gttccaaacg cggtgccagc gggccaggat cgattccaac      1560
     aaattatctg tccccatcca gaagaactca tcgtcaactc aacacgcttt cctaacaaag      1620
     aatctacagt gaatcccaat ctggtaagtg ccaccccagc ttctcctcat gaaataaatg      1680
     aaacccctca accacaacct tatctcgacc accaatttct taacacctcg ctaccaattg      1740
     gtggttcaat aaacgataat ctgttgccac atacccatta tgaccatcaa accttgaata      1800
     tttcgacacc tcgtggaggc ccttcgacct catttaacaa catcccaacc acccaaaatg      1860
     cagaaactta cgcatatcac cagttcgagc cagcaatgcc cagcaacata cgtgggaact      1920
     gtgtacagca ggatgttttc cgcccatcgc cggaacatct tgccgccaga caagtacttt      1980
     ccaaagaatt gcccacattc actggggacc ccgtcgactg gccacttttc catagcagct      2040
     accaccactc tacgcaagct tgtggctact ccgactttga aaatcttcta agactacaac      2100
     gcgccttgaa gggagcagct aaggatgcag ttagcagttt tttgctgcat ccttcaacag      2160
     tccctcaagt tatgtctacc ttgcaaacct tatttggtag accagaacaa attgtccata      2220
     acctgatcga gaaggtaaga gcgactccac cccccaaacc cgatcgatta gagacattag      2280
     ttacattcgg actggcggtg caaaatctgt gcggtcacct gaaagccgtt ggactaaact      2340
     ggcatttgtc taatccatcg ttgttgcagg agctagtcga taagttacca gcaaatgtga      2400
     aattcaactg ggcaatgtac caacagcaat ttccagttgt tgatctcaac gtattcggag      2460
     aatatatgac acgagtgaca tcagcaacca gtagcataac tttgactaac atgcagcaaa      2520
     aaatcgtcaa ggatgaccgt gctaaggcga aagagaaagc attcgttaat gcacacacta      2580
     caggagagaa agattcggag cagcaaatca acgaagacgg tacgcacttg cgaacggaac      2640
     agcgtccaga tttgaagatg gagcagacaa agaaatgtcc agggtgcaaa gtggaaggcc      2700
     atcaagcaag tgaatgtgaa aagtttaaag ccctcagcct agacgatcgt tggaatctcg      2760
     tgaagaacaa taaactgtgt cgaagatgtt tgacttctca tttacgatgg ccgtgcaaag      2820
     ctgaagcctg tggtctgaat ggttgccaaa aattacatca ccgtctgctg cattacgatc      2880
     ctgcaacgga attaaagcag ccggaacgta gtactaatgc aaccgtcacg atacatcaaa      2940
     gcatcactac gtctatgctc ttccgagtgc ttcccgtaac actgtatggg aaattcggag      3000
     aggttaatac gtttgctttc ctagacgacg gatcttcagt gacactggtt gaagaggaaa      3060
     tcgcacgagc actaggacta gacggaccaa gggaatcgtt gtgcatccaa tggacaggtg      3120
     gtatcaacaa aggaattgca gatgctcgca tggtscagat ggaaatctct gcgcaaggga      3180
     gcgaaaaacg ctacaaaatt ggagaggctt acactgttga caaactagga cttccacgac      3240
     aatctttgga tttcgaagaa atatccgagc gctttaagta tctcaggaag ttacccgtta      3300
     aaagttttca atcagctgta cccggaatac tcataggaat cgacaacgtt catcttcttg      3360
     ctacactcaa gttgcgtgaa ggacgtatac aagagccgat tgcgtcaaaa acacgaattg      3420
     gttgggcagt atacggaaga attcagggag gagagctgat gcagcaccgt caattgcaca      3480
     tttgcaagcg accttcgctc accgaactcc atgactacgt tcaagaattt ttctcattag      3540
     aaaatttggg catcgcagca gccccggcct tagaaagcgc ggaagaagaa cgagcccgaa      3600
     aaatattggt ggagtctaca gtgcgtacca actgtggcaa attcgaaaca ggactactgt      3660
     ggaaaaatga ttatgtggaa cttccggaca gcagacctat ggctgaaaga cgtctgaaat      3720
     gcttggagaa gcgacttcag agaaattcaa cgctatacga agttgttcgt aatcaaataa      3780
     tggactataa gcttaaggga tatgtgcatg aagctactaa agacgagatt gaaagcttcg      3840
     acccacgacg cacgtggtat ctgcctcttg gtgtcgttac aaacccaaaa aagcctggaa      3900
     aagtccgcct ggtttgggat gcagcggccc aggtaaacgg cacttcttta aacgacgaac      3960
     tcctgacagg tccagacctc ctaactcctt tgttagcagt gatgtttcaa ttccgagagc      4020
     gtgaggtagc aatatcggcc gacattatgg aaatgtttct acagatcctt attcggcctg      4080
     aagatcgtag cgctcttctt ttcttatgga gagattctcc tgagcagccc ataagagtaa      4140
     tggtttccaa cgtagcgata tttggagcga cttgctcccc agtgcaatca caatttgtaa      4200
     aaaatttaaa cgcatcggta gtatgaagaa aactacccaa gagcttcgga agccataaaa      4260
     aacaaacact atgtcgacga ctatcttgat agtgtcgaca cggctgacga ggcagttcaa      4320
     ctagctaatg acgtaacgac tgttcatggg aaagcagact tcttcattcg gaactggaga      4380
     tcaaacagac gcgaagttct tgaacggata ggcgaagtta atacagtggc aactaaacaa      4440
     ttcactgctg gtaaagaaat aaaccttgag cgaatcctag gaatgatatg gctgcccgac      4500
     gaagatgttt tcgccttcaa cttctgttta cgaggtgatg tccaacgtct tatgaatggt      4560
     gaagtaattc ccactaaacg agaagtatta ggcgttgtaa tgagtctata cgacccgctt      4620
     ggaattgtgg ctaccttcat agttcacgga aaagtaattg ttcaagatac ctggagagag      4680
     agcatcggtt gggatgataa aataccatcc sgaatatttc agaagtggaa gcggtggctg      4740
     aacttgatgg cagtgatctc taaagtgaga atcagtcgtt gttattttcc gggctatgac      4800
     ccgatcagct acaattcgtt gcagttgcac atttttgttg atgcgmktac agaagcctmc      4860
     gctgcagtsg cwtaccttcg kgktgtagac gaaggagaaa ttagatgttc gcwagtctct      4920
     tccaaaacta aagcagcgcm tcttcaagct ttatmaatcc cgcgtctwga kttgatggca      4980
     gccttgatcg gggctcgttt aagaaaaaca atcaaagaca acaacactcc ctaaaaatca      5040
     gtcgtacaat tctctggagc gattccacaa cggtgatggc ctggataaaa tctgactctc      5100
     ggcgttatcg tcaattcgtg gcatttagaa tcaacgagat actcagtttg acttcggtag      5160
     atgaatggag gtggatagga acgagagcta acgtcgccga cgaggcaaca aagtggggta      5220
     aagggccttc ggtttaccct gatagccgat ggtatcgtgg acccacattt ctgtatgaac      5280
     ctggtaatga ctggcgggat gagcaatgtg tggaaactac cgaagaactt cgmccatcat      5340
     ttgtatgcgc acatgtcckc gcagaaccaw tgattggttt tgcgmgattt tccaagtttg      5400
     aacgattgaa sagaactgta gcctatgctc awagatacat ggacwwcttg acgtcgagtt      5460
     gtcactggtg ttccacgcga aactggawsc aatmtaggac aagmggagct gcagaaggmt      5520
     gaggtaacgt takkgatact tgcacagtta gaagcctatc ctggcgaagt sgcagcgttg      5580
     aagmasaaca aggaaagggg aacgaaattg wcaattgagw gmtcgagswa gwtagcaaat      5640
     ctcccaccma tgatkgwtgg tcaggwtgtt ctccgagtwg atggtcgtct ggatgctgma      5700
     ggctgttcka catttgatgm gaagtatcca gttatacttc cgagggaaca ccgcctgaca      5760
     gaacttgtta taaactggta tmacgataag taccggcacg ccaatgatga gactatactg      5820
     aatgagattc ggcaaaagtt ttttgtatcg aaacttcggg caagcctacg aaagacgaag      5880
     tcgcggtgca tgtggtgccg agttcacaag agtatcccgg tgccgccgaa aatgggacca      5940
     ctacctaaag ttcgtttaac accatttgta cgagcattca cattcgttgg tatagattac      6000
     ttcggcccat atttagtcaa ggttggccgc agtgtagcca aacgctgggg agtagttttc      6060
     acttgtctga ctatcagagc aatacacatt gaggttgcct gtagtttatc ggccgattct      6120
     tgcaaaaaag cgattcggag attcatcgca agacgtggag cgcctcaaga aatttattcc      6180
     gataacggaa ctaatttcat cggcgttagc agggagcttg caaaggaact cgcagagatm      6240
     aattcagagc tcggcaattc tataacggac acttacacaa agtggaggtt caatccgccc      6300
     tcagcaccac acatgggagg atgctgggag agaatggtga ggtccatcaa aacggcactt      6360
     gaagtcatac caatcgaccg caagctagac gacgaatcat tagcaacgat gtttttggaa      6420
     gccgaaagaa tgatcaactc gcggccattg acgtttgtat ccctggcgac gtccgacgat      6480
     gaagcaatta ctccgaacca tttcctgctg cttagttcaa gtggagttca acagcctgta      6540
     aaactgccgg tggacgaaaa acaagctctg cgaagtagtt gggatatgat tcaacgcacg      6600
     ttggatcgga tgtggcgacg ttggatcaca gagtaccttc caacgattgc aagaagaaca      6660
     aaatggttca aaggtgttcg awcaatcaaa gagggtgatt tggtggttat tgctgatgag      6720
     aaggtcagaa atagatggtt gaggggtcgg gtggcgcgtg tatatccagg taaagacgga      6780
     acaatacgga aggctgatgt aatgactact ggaggtatac taagtcgagc tgttgctaag      6840
     cttgcgctat tagacgtgga accgaaggat gacgccggat cggaagttca ggcgacatga      6900
     gggggagga                                                              6909
//
ID   BEL-626_AA-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-626_AA_;
KW   Pao_Bel_Ele210; BEL-626_AA-I; BEL-626_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-381
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 381 BP; 142 A; 59 C; 68 G; 112 T; 0 other;
     tgttgcgcgc aagcccctcg tacgagaatg aacattgtgg agtttgacag aaaattgtga        60
     gtggcagacg tttgacgttc tgatcattaa cagggaaata taaaaacagt tatccagatc       120
     gcttaaaatt atcggaaggt tgaaaaggat ttgtaagata aaattattta ctatacctta       180
     aatattctaa aacaattgaa cttacaggct aatctgaact taaacctaaa ttggacttaa       240
     aaactataat ttgttcacga ttgaattaaa taggagacta aattgtaagt aacaatatat       300
     ccatgcaaac cggtgaaata atggattcaa ataaaatttc agcttgagct ttaccctact       360
     gcaaaagcga gtttcgcttc a                                                 381
//
ID   BEL-627_AA-I repbase;    DNA;    INV; 6735 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-627_AA_;
KW   BEL-627_AA-LTR; Pao_Bel_Ele182; BEL-627_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6735
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5680-6258] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1312..6651
FT                 /product="BEL-627_AA-I_1p"
FT                 /translation="MIAMKPDVKKSPSMRALTARLKEIQLSFGDIDRFAQL
FT                 FKETTTSTEIEIRLSKLDEFWESFSEALVDIFSHDDYNPDSTSLERERIEF
FT                 SDRYYQLKSFLSDKLKDRQRPQELENSIRGGDASAHGNMDHVRLPQITLQP
FT                 FNGNIDEWLSFRDLFTSLIHWKAELPEVEKFHYLKGCLQGEPRALIDPLPI
FT                 TKANYQVAWDMLLKRYNNSKQLKKRQVQALFKLPTLAKESGSELHILLESF
FT                 ERIVQTLDQVIQPVDYKDLLLVNILTTRLDPVTRRGWEEVSATKEQDTLED
FT                 LREFLQRRIQVLDCLPAKSTDTRGVTSIPQQSKSKSQPMKTSYSSTQAPRT
FT                 RCVVCSSDHFLFHCKEFQRLAVTDRDALLKSNGLCRNCFRPGHLARDCPSK
FT                 YSCKNCRGRHHTLVCFKSEREKDALVAAVAGSTKPSTSQNHQESSSSSSVQ
FT                 VSNIASTEPVVSATSHQQSGQVLLATAVVLIEDDSGNRLPARALLDSGSES
FT                 NFITERLSQQMKVCRDRVDISVLGIGQTGTKVKHRIHAVIRSRLSTFAREM
FT                 DFLVLPKVTVNLPTTTTNTDNWAFPSGIQLADPAFFERNGVDLVLGIEHFF
FT                 DFFQTGRRISLGVGNPTLNESVFGWIVSGGISAPNRSLQISCNVSTMDDLD
FT                 ALISRFWSCEEVETGKALSLEEKRCEDNFSRTVRRGSDGRYTVSLPKQDDG
FT                 ISRLGDSRDIAYRRLQGTERRLARDPLLRQQYHDFMEEYAKLGHMRLVKGS
FT                 ELETIKRCYLPHHPVIKEASTTTKVRVVFDASCKTATGASLNDILLTGPIV
FT                 QEDLRSIILRSRTKQIMLVSDVEKMFRQIYVDTKDRPLQSILWRNSPSDIA
FT                 LTYELNTVTYGTKPAPFLATRTLQQLAFDEEKNFPLAASAATDDTYMDDVI
FT                 TGADNAEMAIEMRKQLDEMSSSGGFRLRKWASNCPAVLEGVAEEDRAIRTS
FT                 EGIVLDPDPSIRTLGLTWMPGTDTLRFQFAIPSLIPDKPLTKRYVLSVIAS
FT                 LFDPLGLLGAAITSAKIFMQLLWTLHDDHNQRLGWDQPLPSTVGESWRRLH
FT                 VQLPLFNEIRINRCVIIPDAALIELHCFSDASEKAYGACLYVRSENLAGEV
FT                 LVRLLTSKSKVAPLKCQTIPRLELCGALLAAQLFEKAAQSIRFTGNSYFWT
FT                 DSTCVLRWIVATPTTWTTFVANRVAKIQSATQNSRWSHVPGVQNPADLISR
FT                 GISPENIVKNTLWWQGPSWLQEKEENWPLLPEGLSAGAEDEERRRTVVVTA
FT                 SSTVSEFYQAYFEKISSYNDLVRRLAYWLRFMRILQTPKEERRNYSFLSTM
FT                 ELKQAENTLVRLVQREFFVTEWKALSSKTDVPRGSPLRWFNPFIDEDNLIR
FT                 LGGRLKHCMESEEAKHPVVLPARHHFTRLLLRHYHERLIHAGPQLMLSVVR
FT                 LRFWPLGGRSVVKQIVHQCLKCFRTKPKTVQQLMGDLPTSRVTVSRPFLRT
FT                 GVDYFGPLYVRPAPRRPAVKAYVAIFICMSTKAVHMELVSDLSTDRFLQAL
FT                 RRFISRRGRCTDMFSDNGTNFVGARNKMQEVLKMLQDCNYHESITRELAKE
FT                 GIQWHFNPPSAPHFGGLWESAVRSAKHHLVKVIGDTPVTPEDMCTLLAQVE
FT                 ACLNSRPLTPLSDDPNDLQPLTPAHFLIGESLHALPEPDFTSILPNRLNLL
FT                 QLTQRRLQDFWKRWKREYLCQLQGRAKRWKSAIPIDVGTLVVIHDDNLPPL
FT                 RWKMGRITQVHPGDDGTVRVVTLKTATGLLTRPVEKICILPLPIDDENNEL
FT                 EPVTITKSK"
XX
SQ   Sequence 6735 BP; 1816 A; 1563 C; 1618 G; 1733 T; 5 other;
     ttttggtcct tcgagccgga ttctggacaa tacacgaatg ttggcaattc ccgccggcat        60
     taagtcgata caatttggtt tggaacgctt tacaacgcca tagtgatacc tcgcggtaga       120
     ggtcactgca ctaaaggtca ttgtatgcac atgaacaaca ccgctgccat tggacatctg       180
     gacaaagcat tacctttcgg gatggcgccg cttggacaga agcgccattg atgcaagctt       240
     cgtttggctt cgcttgggat agcaattgtg gaactggact tcaactgaag tgttgcatgc       300
     tacaacatca gcgaggttat tgcatgatac tcgctagtaa cgggaccact caacggattc       360
     tgctatttgg attggatcaa aggtcgtcgc ctgaaggaat tcacgtttta ccggaaagga       420
     gatcgcctct tcgaaccgct ggaccggcgc aacgctttct ttctcaggta aataagatag       480
     aatagtgtat gtccagccga agcgtaggct ttctatatac taataccaac aattsgacct       540
     atttttccgg acctgtgacc acctgacctg cgacaaggga agtcgcctcc gttgatgtgg       600
     attggcattc cgccggaatc gaggatttac gtttacaacc aaggaagatt ggacgatatt       660
     tcggactttg gattcttcga gatcgcctac actagggtaa tctggccaaa caactacagt       720
     aactacacta ccactggttt tcaaggatcg tcggcaagaa gagggagcgt catcaaaggt       780
     tttctcgggt gagtgaactt tttgtatact gccgaagcta gacgcagaaa atacaccatt       840
     ttgaatgaaa tctatcctct tcgactttgc cattttcctg ctgagccctg aatgctcttc       900
     tgagcgaccc attcttgaaa tttggawtag ttattcggac ttcgccggga tttgcaccgc       960
     tgctggtttc tccaggtgag ttgccgcagt atatgcctgg ccgaagccgg aaactttcgg      1020
     ttactacacc aacatttctc ctcttcgcct tctcctcgct cgagtcatcg ctgaatttgg      1080
     tcggttattg agttggcacg acgctgatta cctggaataa gccgttgcgt tgtattggac      1140
     ccttgccatc tggttgtcga ttgattgtcg tttcgtgcgt gttggattct tggagtagca      1200
     gtactcgttt ctccgggtaa atactagcag tatatgccta gccgtggcta ggtctaccgt      1260
     cagcatacta cacctcgcct ctctctctct ttgtgtcgcc aacacgtacg aatgatmgcc      1320
     atgaaacctg acgtcaagaa atctccgtca atgagggcat tgacagccag attgaaggaa      1380
     atccagctat ccttcggtga catcgatcgg tttgcgcaat tgttcaagga aactaccacg      1440
     tccaccgaaa tagagattcg cctgagtaag ttagacgagt tttgggaaag cttcagtgaa      1500
     gcwttagtcg atattttctc ccacgatgat tacaatccgg atagcacttc actggaaagg      1560
     gagcgcatcg aattcagtga ccgttattac cagttgaagt cctttttgtc ggataagctt      1620
     aaggatcggc agcggccaca agaattggag aattccattc gaggaggaga cgcatcagcg      1680
     cacggaaaca tggatcacgt gcgcctgccg cagatcacgc tacaaccatt caacggaaac      1740
     atcgacgaat ggttgagttt tcgggacctt ttcacctcgc ttatccattg gaaggcggaa      1800
     ctaccggagg tggaaaagtt ccattatttg aaggggtgcc ttcaaggtga accgagagca      1860
     ctwatagatc ctctcccaat caccaaggcc aactaccagg tggcctggga tatgctgttg      1920
     aagcgttaca ataacagtaa gcagctaaaa aagcgacaag tacaagccct gttcaagttg      1980
     cccactttag ctaaggaatc cggatcagaa ttacacatcc ttctggaaag cttcgagaga      2040
     attgtacaga ctcttgatca agtcattcag ccagttgatt acaaggatct gctcttggtg      2100
     aatattctta cgacccgttt agatccagtt actcggaggg ggtgggaaga ggtgtcagcc      2160
     acgaaggaac aggacacgct cgaggatttg cgtgaatttt tgcagcgcag gattcaggtt      2220
     ttggactgct tgccagcaaa atcaactgac actaggggtg tcacatcgat accacagcaa      2280
     tcgaaatcta aatcgcagcc gatgaagacc agctatagct ccacccaagc acctaggact      2340
     cgctgtgtcg tttgttcatc ggaccatttt ctgttccact gtaaggaatt tcaacggttg      2400
     gcagttactg atagagatgc tctgctaaaa tcaaacggac tctgtcggaa ttgtttccgt      2460
     cctggacatc tggctagaga ttgtccttca aaatacagct gtaaaaattg tagaggtcgt      2520
     catcacacac tggtatgctt caagtcggaa agagagaagg atgccctcgt tgcggcagtt      2580
     gctggaagca cgaagccgtc tacttcgcag aatcatcagg agtcatccag ttcatcttcc      2640
     gttcaagtat ccaacattgc atccacggaa cccgtagtgt ccgctacatc tcatcaacag      2700
     tcagggcaag ttttgttggc tacagcagtt gtattaatcg aggacgacag cggaaatcgt      2760
     ctacctgctc gcgctctgtt ggattctggg tcggagtcca atttcatcac ggagaggttg      2820
     agtcagcaga tgaaggtctg ccgagatcga gtggacattt ctgttctcgg aattggacag      2880
     actggaacca aggtaaaaca caggatacat gcagtgataa ggtcacgctt gtctacgttt      2940
     gcacgcgaga tggatttctt ggttctccca aaggtaacgg tgaaccttcc aaccaccacc      3000
     actaatacgg ataattgggc gtttccgagc gggatccaac tagcagatcc tgcattcttc      3060
     gaaagaaacg gtgtggatct cgtgctgggc atcgaacatt tcttcgattt cttccaaacc      3120
     ggtcggagga tttctctggg cgtaggaaat cctactctta acgaatctgt attcggatgg      3180
     atagtgagcg gcggtatttc ggctccgaat cgatcgctac aaatcagttg caatgtttca      3240
     acgatggatg acttagatgc actgatctct cggttctggt cctgcgagga agtagaaaca      3300
     ggaaaggcgc tctcattgga agagaagcgg tgcgaagaca atttttcacg aacagttcgc      3360
     cggggttcag acggtcggta caccgtctca ttaccaaaac aggacgatgg catctcacgg      3420
     ttgggcgatt caagggatat cgcataccga cgtctgcaag gaactgaacg tcgactggct      3480
     cgggatccac tgcttcgaca acagtatcac gatttcatgg aagaatacgc caaattgggt      3540
     cacatgcgat tagtgaaagg atctgaattg gaaacaataa agcggtgcta tttaccgcat      3600
     caccctgtta tcaaagaggc aagcactact accaaggtac gggtggtgtt tgatgcttcc      3660
     tgcaaaacgg cgaccggtgc atcgctcaac gatatactgc tgacagggcc aatcgttcag      3720
     gaggacctcc ggtctatcat tctacgtagc cgaacaaaac aaattatgct tgtttcggac      3780
     gtagagaaaa tgtttcggca aatctacgtt gatactaagg accgtccgtt gcagtccatt      3840
     ctgtggcgca attcacccag cgatattgcc ctcacctacg agcttaacac agtaacctac      3900
     ggaactaaac cagctccgtt tctggccact aggacactgc aacagttggc tttcgacgaa      3960
     gagaaaaatt tcccactcgc agcaagtgct gcgaccgatg atacctatat ggacgacgtt      4020
     attacaggcg ctgataatgc agaaatggcg attgaaatga gaaagcagtt ggacgaaatg      4080
     tcttcaagtg gtggattccg tttacgaaaa tgggcgtcta actgtccagc tgtgttggaa      4140
     ggtgtggcag aggaagatcg agctattcgt acatcggaag gaatcgtatt agatccagat      4200
     ccctcaatca gaacgttggg tttgacttgg atgcctggta cggatactct gagattccag      4260
     ttcgcaattc caagtttgat tcctgacaaa cctctcacca aacgatatgt actatcggtg      4320
     atagcttctc tattcgatcc cttgggactt ttaggagcag caataacgtc agcaaaaatc      4380
     ttcatgcagt tgctgtggac acttcatgac gaccataatc aacgtctggg ctgggaccag      4440
     ccacttcctt cgacggtggg tgagtcttgg aggagattac atgtgcagct tccattattc      4500
     aacgaaatac gaatcaaccg ttgcgtcatt attcctgatg ccgccttgat agaactgcat      4560
     tgtttctcag atgcatcaga gaaggcatat ggagcttgcc tatacgtaag aagcgagaat      4620
     ttggctggag aggtgctagt tcgtcttcta acttccaagt ctaaggtggc accgttaaag      4680
     tgccaaacga tacctcggtt ggaactgtgt ggagcgctct tggcagcaca attattcgaa      4740
     aaggctgccc aatctattcg attcacgggc aactcctatt tctggacgga ttcaacatgc      4800
     gtacttcgtt ggattgttgc aacccctact acatggacca ctttcgtcgc caaccgagtg      4860
     gcaaaaatac aatccgctac ccaaaactct agatggagtc acgttccggg tgttcaaaac      4920
     ccagcagatc tcatatctag gggaatttca ccagaaaaca ttgtaaaaaa tactttgtgg      4980
     tggcaaggtc catcgtggct acaagagaag gaagaaaatt ggccccttct accagaagga      5040
     ttatcagcag gagccgaaga cgaagaaaga cggcgtacgg tagtagtcac cgcaagttca      5100
     acagtttcgg agttttatca agcgtacttt gaaaaaattt catcgtacaa tgatcttgtt      5160
     cgtcgccttg catattggtt acgttttatg agaatccttc aaactccaaa ggaagaaaga      5220
     agaaactact cgtttttgtc cacgatggaa ctgaaacagg ctgaaaatac tttggttcga      5280
     ttagtgcaaa gggagttttt tgtaacggaa tggaaggcat tgtcttctaa aactgatgtt      5340
     cctagaggat cgccgttgag gtggttcaat ccatttatag atgaagacaa tttgattcgg      5400
     ctgggcggcc ggcttaaaca ttgtatggaa tccgaggaag ccaagcatcc agtagtactt      5460
     ccagccagac atcacttcac tcgtttgtta ttacgtcatt atcatgaacg attgatccac      5520
     gctggaccac aactaatgct aagtgtcgtt cgactacgtt tctggccact aggaggaaga      5580
     agcgtagtaa agcagatcgt ccaccaatgt ctgaaatgct ttcgtacgaa gcctaaaaca      5640
     gttcagcagt tgatggggga tctacctaca tcacgagtaa cggtatcacg accatttctt      5700
     cgaacaggcg tggactactt tggacctctc tacgttagac ctgctccaag acgtccggca      5760
     gtcaaggcat acgttgcaat tttcatttgt atgagtacga aggcagtcca tatggagctt      5820
     gtctccgatc tttcaaccga tagatttctt caagcgctaa gacggtttat ctcaagaaga      5880
     ggacggtgca cagatatgtt ttccgacaac ggtactaatt ttgtcggtgc gcgaaataaa      5940
     atgcaagaag tattaaaaat gctccaggac tgcaattatc atgaatcaat cacgagagaa      6000
     ttagcaaagg aggggataca gtggcatttc aacccgccca gtgcgccaca ttttggcgga      6060
     ttgtgggagt ccgctgtacg atcagcaaag catcatctcg tgaaggtaat tggtgatact      6120
     ccagtgacac ctgaggacat gtgtacgttg ttagcacaag ttgaagcttg cctaaatagt      6180
     cgccctctca cccccttgtc cgatgatccg aatgatctcc agccgttaac acccgcccac      6240
     tttttgattg gagaatcatt gcacgcgttg cctgagccag atttcaccag cattctgcct      6300
     aatcggctta atctgttaca actaacccaa cggagattgc aggacttctg gaagcgctgg      6360
     aaacgagaat acttatgcca gctgcaaggt cgagccaaaa ggtggaaatc cgccatacca      6420
     attgacgtag gaacgctcgt agtaatccac gacgacaatt taccacctct acgttggaaa      6480
     atggggcgaa tcacccaggt acatccggga gatgatggaa ctgtgcgagt ggtaaccctc      6540
     aaaaccgcta caggcctgtt aactcgtcca gtcgaaaaaa tttgcatatt gccactccca      6600
     atcgacgatg agaacaacga attggaacca gtcacgataa ccaaatccaa atgatcagtc      6660
     ctttccctcc ctataccgcg aagaggattt tttatctatt tacagaaact tatgaacttt      6720
     ctgggtgggt gagaa                                                       6735
//
ID   BEL-627_AA-LTR repbase;    DNA;    INV; 704 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-627_AA_;
KW   Pao_Bel_Ele182; BEL-627_AA-I; BEL-627_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-704
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 704 BP; 185 A; 162 C; 178 G; 179 T; 0 other;
     tgatcgcgag tgctctatcc ccgagctaca accctggtgg attatcaagg tagccgtgca        60
     tgtaatgcaa gccaccgtct atctgctagg tatctacatc acctctatca ccggctcgtc       120
     aatgcgagcg aggagagata ttctggtagt ctaccatcga gcttcgtccg ttatcagctt       180
     gcgcgagaag gagagctgag cattatcagt gtcggagttc aaacgaagct acgaatctcc       240
     ggagagctga cccgaacatc cagaagacgg cttgaggtgt tttctccaga agaacagaaa       300
     ccagaaacga aaaggtcacg gtccggtccg gtacgagagc acctacgctc gtcggttttt       360
     taatctgttg tagatataag tgtagtttat agttaggaat aaaagtcagt gtccagtttt       420
     ttaataaatg tagttgtccg taaaaataaa tgtgtaatta aagtgttcat gtgcatttcg       480
     tgtttggaaa tgctattggt ccttcgaaag gaattagccg tggttggaac gaagaaaacc       540
     acggtcttca acccctggga atttcttgct gcatggtgaa tgcatgcccc cctgcgtttc       600
     ccacctcatc atcagccacc ggtcgatgtg cggtaacctg cccggaagga gcgatcgaag       660
     gtctggatac aactcggcac caggtaacag ggcagatccg ttca                        704
//
ID   BEL-628_AA-I repbase;    DNA;    INV; 5926 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-628_AA_;
KW   BEL-628_AA-LTR; Pao_Bel_Ele79; BEL-628_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5926
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4976-5536] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..4394
FT                 /product="BEL-628_AA-I_2p"
FT                 /translation="MSKKGDGQSKRGTSPSNKDPLPVVSCDICRKPDDSRM
FT                 VACDSCGQWYHFMCVSVDSSVQDEDWSCKKCSEAGKQLLANTSTPNNAGTI
FT                 PKSGTSKPADLNVEEYIQKQLMAMQKKFEKMMKEKDDQRLKELRDQRKQYE
FT                 QLLKATEQRVQQLEQQHRGITSSGSGTAGSLSDKQPKQTLPRGGSTTNSND
FT                 LRMMLGGGLPESFGRYQHPDVASGVNNPLQWTLGTGPTASSTSNPLPQIHV
FT                 QDVSQGDDALAQELLLLEEKQALERKHLEERSRLLQQRYAIGGSATTGLNP
FT                 QATVFQPNVSSAFGVPLLSQSQVSARQAVNKELPPFSGDPEEWPLFIASYE
FT                 HSTRICGYSEEENMLRLQRSLRGKALEAVRCRLLLPANLPGVLATLKTLFG
FT                 RPEIIVHSLVNKIREMPPPKAEKLQSLIDFGVAVQNVCATIAASGLDEYMC
FT                 NVALLQELTERLPPAIRLNWAYHRQGLNRVTLSEFGDWLGKLVEAASIVTI
FT                 PSISAPKTERRGQKGENYINVHSESSSIVDAAAKERPSTPKGCLVCQNECS
FT                 GLEKCPRFLDMDVGTRWTIVKEQKLCRKCLRKHFGSCHIKASCGRHGCTFV
FT                 HNSLLHDDKRYSKPATTEVAKTPAENSSESCNTHSKTARKILFRYVPVTIY
FT                 GKGKQVTTYAFLDDGSSATLMEHSLLKELGLKGRSHPLCLDWTGGHQREEN
FT                 ESVMLALKISGANDASEVFELPEVHTVRDLSLPKQSVLIPQLETKYCYIEG
FT                 LPLESYDNVSPRILIGMDNCRLGHALRSIEGGENEPVVSKTRLGWMIYGPC
FT                 AIESGTINSNHSSHHSFHICPCVKEDEKDLNTAVKEYFSIESLGISGSPTS
FT                 LPSKDEERALKILSTETRLVGNRYETGLLWRFDQVQLPDSKGMALKRLGCL
FT                 QKRLRREPELAVAMHVKMAEYEEKGYIRRLSTREKAEKHSNDWYLPIFPVT
FT                 NPNKPGKLRIVFDAAAKVNGVSLNSFLLTGPDQLVSLLAVLYKFREFRVAV
FT                 VGDIREMFFQVRMKKQDQRSQMILWNNGKTEDEPDAYVVAVMTFGAACSPS
FT                 SAHYVKNRNADRFEKEYPRAVECIKYEHYVDDMLASVETEEEAVKLATEVR
FT                 TIHSEGGFEIRNWLSNSSDVVTSLHENSTTEKNMSFSTEMSTEKVLGMWWD
FT                 TTTDTFTFRLSPKHDQELLSGTRMPTKREVLRTLMAIYDPLGLIANFLIYL
FT                 KILLQEIWRSGCGWDDEISGKIADRWSTWIEALPNVRQVRIPRCYRYETSA
FT                 EPTNNVELHIFCDASENGIAAVAYLRFEEKQIVECALVGSKTRVAPLKFLS
FT                 IPRLELQAAVIGARLADCIVKSHRLKITQRVFWTDSRDVVCWLRSDHRRYS
FT                 QFVAFRVSELLDTTQVSEWRWLPTKQNVADEGTKWQRPPDFQPSSRWFRGP
FT                 DFLWDPKKEWPGDSGDQGATIEEIRPSVLHHTSVLRQQW"
FT   CDS           4439..5926
FT                 /product="BEL-628_AA-I_1p"
FT                 /translation="MGYVHRFIATLRKGTKKLVGPLTQDELKLAENTIYRL
FT                 VQQLAYPDEIQLIRDKDPGAYPWERVLPKTSPLHKLSPFIDEHGVLRMRGR
FT                 IDACEWADKAAKNPILLPRNNHVTNLVMADYHAACRHQNHQTAINQIRLKY
FT                 NVPRLRSEFGRVRKSCQRCKIRQARPQPPEMGNLPPARLAAFQRPFSYTGI
FT                 DYFGPMTVLVGRRAEKRWGVLLTCMTTRGVHIEVAHSLTTDSCILALRNFI
FT                 ARRGAPLEIISDRGTNFIGASRELCEALKHVNEEELMVEFVSPDTKWTFNP
FT                 PAAPHFGGCWERLIQSVKKTLHDFEPPRLPSDEILRTMLLEIEMILNSRPL
FT                 TDIPLDNDTEPPLTPNHFLLGSANGSKPPIAFDDKPSVLKRSWTMAQLYAD
FT                 HFWKKWVAEYLPTLTRRTKWFQPAKPIQEGDLVIVVDNSLPRNCWPRGRVV
FT                 KAVHAKDGQVRRVTVQTASGLLERPATKVAVLDVGAKGGKPLGQQWRTEGE
FT                 "
XX
SQ   Sequence 5926 BP; 1614 A; 1419 C; 1631 G; 1262 T; 0 other;
     tatttataaa atccgtttac gatcgggggc tcggtatgtc aaagaaaggt gacggtcaaa        60
     gcaagcgggg aacttctcca tcgaacaaag atcctttgcc ggtagtgagc tgcgatatat       120
     gtcggaagcc ggatgatagc cgtatggtag cgtgtgattc gtgtgggcag tggtatcatt       180
     tcatgtgcgt tagtgtggac tcgagtgtac aggacgaaga ttggagctgc aagaaatgtt       240
     ctgaagcagg aaaacaactt ctagccaaca catctacacc gaacaacgcc ggaacaatac       300
     cgaagtctgg aacaagcaaa ccagcggatc tgaacgtgga ggaatatatt cagaagcagc       360
     taatggcgat gcagaagaag ttcgagaaga tgatgaagga gaaggatgac cagcggctga       420
     aagagctcag agatcaacgg aagcagtacg aacagctact gaaagccacg gagcaacgtg       480
     tgcagcaact ggaacagcaa catcggggaa tcacatcgag tggaagcggg acagcaggga       540
     gtttgtctga taagcagccc aagcagactt tgcctagagg cggatcgacg acaaattcga       600
     atgatctgcg aatgatgctc ggtggtggat tacctgagag tttcggtcgt taccagcatc       660
     cggatgtggc tagtggtgta aataatccgc tgcaatggac tcttggaaca gggccgacag       720
     ctagttcgac cagcaatcca ttaccgcaaa tacatgttca ggacgttagc caaggcgacg       780
     acgctctagc gcaggagctg ctgttactgg aggagaagca agcgttagag aggaagcatt       840
     tagaggaaag aagtcgactt ctacagcaac gatacgcgat cggcggaagt gctactaccg       900
     ggctgaaccc tcaagcgaca gtattccagc cgaatgtaag cagtgctttc ggtgttcccc       960
     tgcttagcca aagtcaagtt tctgcgcggc aagcggtcaa caaagaactc ccgccattct      1020
     ccggagaccc cgaagaatgg ccgctcttca tagcaagtta tgagcactct actagaatct      1080
     gcggatacag cgaagaagaa aacatgctgc gtcttcaacg aagcctgaga ggaaaggctc      1140
     tggaagcggt acgttgccga ctattgctgc ctgcgaatct tcccggagtg ctagcgacgc      1200
     tgaagaccct ttttggaaga ccggagataa tcgttcattc gctggtgaac aaaattcgtg      1260
     aaatgccacc accgaaggcg gagaaactgc aatcgctgat tgacttcgga gtagcggttc      1320
     aaaacgtttg tgccactatt gctgcttcag gcctggacga gtacatgtgt aatgtggctc      1380
     tccttcaaga gttgacggaa agattgccgc cggcgatcag gttgaactgg gcgtatcatc      1440
     gacagggtct gaatagggtg acactttcgg aatttggaga ttggttgggt aagctagtcg      1500
     aagcggccag cattgttacg ataccctcca tcagtgctcc gaaaacagag cgacgcggac      1560
     agaaagggga gaattacatc aacgttcatt cggaaagcag ttcaattgtc gatgctgctg      1620
     cgaaggagcg tccttctacg ccgaaaggtt gtctcgtatg tcagaacgaa tgcagtggtt      1680
     tagaaaagtg cccgagattc ctcgacatgg acgtcgggac ccgctggacg attgtgaagg      1740
     agcaaaaact gtgcagaaag tgtctgcgga agcacttcgg atcctgtcac atcaaagcgt      1800
     catgcggaag gcatggatgt acgttcgtgc ataatagtct gctgcacgat gacaagcgat      1860
     acagcaaacc tgctaccacg gaagtagcga aaacgcctgc agaaaactca tcggaaagct      1920
     gcaacacgca ttcgaaaacg gcgaggaaaa tactctttcg gtacgtgcca gttacgatct      1980
     acggtaaggg gaagcaagta actacctatg cctttctcga tgatggatcg tcagcaactc      2040
     tgatggaaca cagtctgttg aaagagctgg ggcttaaagg aaggtcccat ccattgtgcc      2100
     tggactggac cggtggacac cagcgagagg aaaacgagtc ggtcatgctg gccctgaaga      2160
     tttccggtgc taatgatgcc agcgaagtat tcgagcttcc agaggtccac acagtccgag      2220
     acctttctct gccgaagcaa tcggtgttaa taccgcagtt agaaacaaaa tattgttaca      2280
     tcgaaggatt gccattagaa tcgtacgaca atgtctctcc gcgaatcctt attggaatgg      2340
     acaactgtcg gctgggccat gctcttagaa gcatagaggg tggtgagaat gaaccagtgg      2400
     tgtccaaaac acgtcttgga tggatgattt acggcccctg tgcgatcgaa tccggtacga      2460
     tcaattctaa tcatagcagc catcatagtt tccatatctg cccgtgcgtg aaggaagacg      2520
     aaaaggatct gaatacggct gtgaaggagt acttttccat cgagtctctg gggatctccg      2580
     ggtcgcccac atcacttcca tcgaaagatg aagaacgagc gttgaagatc ctgtctaccg      2640
     aaacgcgatt ggttggaaac cgttatgaga ccggcctact gtggcgcttt gatcaagtcc      2700
     agttgccaga cagcaaggga atggctttga aacgtctggg ctgtttgcaa aagcgactga      2760
     gacgggaacc tgaattagcc gttgcgatgc atgtgaaaat ggccgaatac gaggagaagg      2820
     gttacatccg gcggctttcg acaagggaga aggcagagaa gcactccaat gactggtatc      2880
     tgccgatttt ccctgttacg aacccgaaca aacctgggaa gctacgaata gtcttcgatg      2940
     cggcggcgaa agttaacggc gtttcactaa attcgttcct tctgacgggg cctgatcaac      3000
     tagtatcgct gctcgccgtg ctctacaagt tccgcgagtt tcgagttgcc gtcgtaggag      3060
     acatcagaga aatgttcttt caagttcgga tgaagaaaca agatcaacga agccagatga      3120
     ttctgtggaa caatggaaag accgaagatg agccggatgc gtacgtggtg gcagtcatga      3180
     cctttggtgc ggcgtgttct ccgagcagtg cacactacgt gaaaaaccgg aatgctgaca      3240
     ggtttgagaa agagtatccg agagcggtcg agtgtatcaa gtacgagcac tacgttgacg      3300
     acatgttggc gagtgtcgaa accgaggaag aagcggtgaa gctagccact gaagtgcgaa      3360
     ccatccattc tgaaggaggc ttcgagatac gaaattggtt atcgaactcc agcgacgttg      3420
     tcacgagtct gcatgagaac agcaccacag aaaagaatat gagtttcagt acggagatgt      3480
     cgacggaaaa ggtgcttgga atgtggtggg ataccacgac agacacattc accttcaggt      3540
     tatcgccgaa gcacgatcag gagctgctct ctggtactag gatgcccaca aaacgcgaag      3600
     tcctgaggac gttgatggca atatacgacc cattgggact tatcgccaat ttcctgatct      3660
     acctcaagat cctgttgcag gaaatctggc gctctggatg cggctgggac gacgagatta      3720
     gtggaaagat agctgataga tggtcgacat ggattgaagc gctaccgaac gttcgccaag      3780
     tcaggattcc acgctgctat cgatacgaaa cgtccgctga accgacgaac aacgtggagt      3840
     tgcatatctt ctgcgatgct agcgagaacg gaatagctgc tgtagcctat ctcaggttcg      3900
     aagaaaaaca aatagtggag tgcgcgctgg tcgggtcgaa aactcgtgtg gcacccctaa      3960
     agtttctatc catccctcgc ctcgagcttc aggctgctgt catcggagct cgtctcgccg      4020
     attgtatcgt aaaatcgcat cgtttgaaga tcacgcaacg tgtattctgg acagattcac      4080
     gtgacgtagt ttgctggctg cgatcggacc atcgacgata cagccagttc gttgcgttca      4140
     gggtgagcga gctactcgac accacccaag tgagcgagtg gagatggctg ccgaccaaac      4200
     agaatgtagc agacgaaggc acgaagtggc aaaggcctcc agatttccaa ccgagtagtc      4260
     gctggttccg cgggcctgat tttctgtggg atcccaagaa ggaatggccc ggagatagcg      4320
     gagatcaagg tgcgaccata gaggagatca gacccagtgt cctgcatcac acatccgttc      4380
     tccgtcaaca gtggtgaact tcgagcgatt ctcaaaatgg aaacgactgt taagatcgat      4440
     gggatacgtt caccgattta tcgctaccct tcgcaaaggc actaagaagc tcgtcggccc      4500
     tctaacgcag gatgagctga aactggccga aaataccatc tatcggttgg ttcagcagct      4560
     agcctaccca gatgaaattc aactgatccg tgacaaagat ccaggagctt atccgtggga      4620
     gcgcgtccta ccgaaaacga gtccgttgca caagctgagt ccgttcatcg acgagcacgg      4680
     tgtattacga atgcgtggac gtattgacgc ctgcgagtgg gcagacaagg ctgcgaagaa      4740
     tccaatctta ttgccgagaa ataatcacgt aaccaacctc gtgatggcag attaccacgc      4800
     agcgtgccgt catcagaacc accagacggc aattaatcag attcgtttaa aatacaacgt      4860
     tccccgtctt cgttcggaat tcggccgcgt tcgcaaaagc tgtcagcgct gtaaaatccg      4920
     acaagcacgt ccgcaacctc cagaaatggg gaaccttccg cccgctcgcc tggcagcctt      4980
     ccagcgaccg ttttcataca ctggaatcga ctatttcggg ccgatgaccg tactggttgg      5040
     cagacgcgct gaaaaaaggt ggggtgtcct gctgacctgc atgactacca gaggtgtgca      5100
     catcgaagtt gcacattcgc tgacaacgga ctcatgcatt ctcgcgttac gcaacttcat      5160
     tgctagaaga ggcgcaccgt tagaaattat aagcgaccga ggaacgaact tcatcggggc      5220
     ctcccgagag ctttgcgaag ccctgaagca cgtcaacgaa gaggagctga tggtagaatt      5280
     cgtcagcccc gataccaagt ggactttcaa tccaccagcc gctccgcatt ttggtggctg      5340
     ctgggagcgc ttgatccaat ccgtgaagaa gaccctacac gatttcgagc caccccgctt      5400
     gccatcggac gaaatccttc gaaccatgct attagagata gaaatgatcc taaactctag      5460
     accgctcact gacataccgc tcgataacga taccgaaccc ccactaactc cgaaccactt      5520
     cctgttaggt tctgctaatg gtagcaagcc cccgatcgcc tttgatgata aacctagtgt      5580
     gctcaagaga tcgtggacga tggcccaact gtacgctgac catttctgga agaagtgggt      5640
     ggccgaatac ttgcctacct tgacccgccg gacaaagtgg tttcaaccag ccaagccaat      5700
     tcaagaaggc gatttggtga tagtcgtcga caacagcctt ccgcggaact gctggccaag      5760
     aggacgagtc gtcaaggcgg ttcacgccaa ggacggacag gtacgacgcg taaccgtgca      5820
     gacagcgagt gggcttcttg agagaccggc gaccaaagtt gcagtactag atgtcggtgc      5880
     aaaaggaggt aagccacttg gccagcagtg gcgtaccgag ggggag                     5926
//
ID   BEL-628_AA-LTR repbase;    DNA;    INV; 667 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-628_AA_;
KW   Pao_Bel_Ele79; BEL-628_AA-I; BEL-628_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-667
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 667 BP; 226 A; 140 C; 115 G; 183 T; 3 other;
     tgtcgcaccc taacgggacg cgatgcaccg acagtcaatg cagtcaatca acagtaagcg        60
     ccgaccctgg tcaggcctat cgtgagtaga caaaacaaag tggaaagttg atcagcagat       120
     aacgtgtagg tgctttattt atctttctac ttaaatccta atttgaattg tttattctac       180
     cttaatctag tatttacggc taggccgagt gttcaatttg ttatcctact taaactctac       240
     gtaaactaaa acacacagca caggtaaaat aagaactaaa aaccatgcaa atcttaaccc       300
     taattatgca catattcaca gcaattgcga cataaatcat taaactaata gtacggatgt       360
     tgtagctagt acggacgaaa gtaccaacag aagaacacta aacgtgagta actaattatt       420
     atacggatta tgcatgcaac gacacaaaaa cgaattccta cgtatcccaa acacaacata       480
     ttagctatca agcactgaac ccacagtggg ctgaattmgc gtaattaatg ccgaaattcg       540
     aaattaatts tgaaatattt tttggttktc tctattccgc aaagggattt tataacgctt       600
     cgtgaataaa ttgttacgaa atcggaaacc gttctgtctg tcaatccgtc cgtctgcttg       660
     cgcaaca                                                                 667
//
ID   BEL-629_AA-I repbase;    DNA;    INV; 6083 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-629_AA_;
KW   BEL-629_AA-LTR; Pao_Bel_Ele167; BEL-629_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6083
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5136-5696] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1262..5041
FT                 /product="BEL-629_AA-I_1p"
FT                 /translation="MVRLRKCLQGKALEAVKCQLLHPSNLDQVIATLKMLF
FT                 GRPEIIVHSLLQKINSLPAPKADRLGTLVDFALAVRNMVATVKACELEEHL
FT                 CNLTLLHSLSERLPPMIRLNWATHRQSLRSATLSEFSDWLYKLAEAASTVT
FT                 MPQFPGVVDNKPRRGRKEDGFLNAHTETVPKPKQFDASAGCLVCQGSCAAI
FT                 EKCKRFLSFSLSARWDALREHKLCRSCLTIHRGPCKSAKICGKSGCQYKHH
FT                 RLLHNDTKGKPETSSSGSQSQAKGHQQASVPVLQDVESCNTHRGGNKSVLF
FT                 QYIPIVLYNNGIELHTHAFLDSGSSLTLMEESLAKQLNLKGEKSPLCLRWT
FT                 ADTCRYEKDAIIVSLNVSGTHPGSGQHTLREVYTVKELKLPSQSLPADNLA
FT                 DRYSHLRGLPIEPYSNVQPKILIGVSNARVMHVLDDREGKLDEPVAVKTRL
FT                 GWTVYGTYTSANNSVQPVLPHSFHICSHFHGTDESLHEAVKNYFALDSLGI
FT                 SAPKNQLLSKEDERALAMLRKVTTFQDGRYQAGLLWKYDDVRLPNNRSMAM
FT                 RRHRCLTKRMEREPRLAETLRAKMEDYERKGYIRKLTQEESRMTGDRTWYL
FT                 PIFPVFNHNKPGKIRIVFDAAASLGGVSLNSVLMKGPDQLNALPPVLYKFR
FT                 ERLIGIGGDVAEMFHQIRMRPEDEHSQRILWCASEDTTEPCDYVMQVVTFG
FT                 ATCSPSTALYVLNENASRFENQYPVAVDAICRRHYVDDMLTSVDTEEEAIQ
FT                 LANDVRYIHLQGGFHMRNWVSNSSAVLEALGENPKPEKSMEMNAELAMEKV
FT                 LGMWWNTTSDVFSYKLCTDRNRELLSGAKHPTKRDVLRTLMAIYDPLGLIA
FT                 HYLMYLKVLLQEIWRAKTVWDDPIEEKHLEKWLTWLRILPDLESVKIPRCY
FT                 FRHEARIDQATIELHTFVDSSESGFAAVSYFRFEVYDYVECALIGSKTRVA
FT                 PLKFVSIPRLELQAAVVGTRLARSIAEGHSIKIDRRYFWTDARDVMCWLQS
FT                 DHRRYSQFVAFRVGEILEATDITEWRWLGTKHNVADDGTKWKFRPDLKPTS
FT                 RWFTGPPFLWKPKSEWPSSSLNGEETIIELRANFLGHIERTVRTILQAENF
FT                 SSWQRMLRVTALVHRFIGNVRHKQKRKPMILGPLTQEELSTAESFLFRQAQ
FT                 ADVYGEELAVVAAGNRLKKKSSLFKLNPFIDDHGVMRISSRLGECDFVDES
FT                 ERHPIVLPRDHPTTRLVVASVHQRYRHQCHETCVNEVRREILHSTSAQSL"
XX
SQ   Sequence 6083 BP; 1532 A; 1597 C; 1546 G; 1389 T; 19 other;
     tcttaaaatt ttcgtttctc ggatcgatcg aagatgccca gaaggagccg aaggcggaat        60
     sgggtgccgg aggaaagcat ccagcagact tgcctgcttt gcaacctccc ggacagcagc       120
     gatatggtga gttgcgacaa ctgcgctcaa tggttccatt ttgagtgcgt cggagtcaac       180
     gcggacgtgg ccaacaggtc gtggagctgc ccggaktgct ccccagctac agatccggct       240
     ccacaactgc cacaatcttc gacaccgtca gcatcaaatt caggtgagcc acatattcag       300
     tcgtcttcac cgccaccgcc agctatgccc acagcagttc cgccaatccc aactctscga       360
     atgccaaccc ckcgccctcg ttcgtcgcag atacaaaatc cgcccccacc aacacctctt       420
     ccgcgtaccc cacttccacg aaccgcatca gtgccaattg ttgagactga agaagtgcaa       480
     atcgttgatc aggaagtgcc ggacgaagtg aatctcgtgg aaagattgcc agcagacctc       540
     cgtctccagt ttctggaaca gcaagaagcc atcgagcaga gatatttgcg gcgtaggttt       600
     cagttgttgc tgggcatacc aacgaacgta aacaatgaaa attcgcaagg tgtcagtaga       660
     aatgttccag caaatcgtgt tgtcgatctt ccccccgtgw gccattcatc accagtgtgt       720
     gtcaatcgat tgcccccacc acccatgcca tcgaackgga atgtttcgcc gttcgttcca       780
     atctckcaks mtgcgaaagg caggatgatc catcggtcat tccgamaatg cttaatgttc       840
     ggccggatgt ttcgacattc cctttgcggc agaccaatca gcaaccaaat tttcccgctt       900
     ctcatttacc tgcctccatt ctccgcccca ctgcttcgcc gttcgcacca cctccgactc       960
     gtttgcgcca taacttgcct gagttctcta atccaatggc cctcaacgca atcgagcttc      1020
     tgccttcgtc ccttttgcgg gcgattcgca tcccgctgca gccgagtatt acccctcggt      1080
     tttmcamgac gacccaacca cagtaggagg gacggcgctg ctaaatagaa gccagatcgc      1140
     tgctcgtcat gcagttccga aggacttgcc tacattctcc ggtgagccag aggagtggcc      1200
     gctatttttc gmmtcktttg agaacacgac tcacctgtgc ggatttacag cggaggagaa      1260
     catggtccga ctgcggaagt gcctgcaggg gaaagcattg gaagcagtaa aatgtcagct      1320
     gttgcaccct agcaatctgg atcaagttat cgctaccctg aaaatgcttt tcggtcgtcc      1380
     ggaaattatc gtccattcgt tgctgcagaa gatcaacagt ctgcctgccc ccaaagcaga      1440
     tcgtcttggg acactcgtcg acttcgcttt agctgttcgt aacatggtgg ctacagtcaa      1500
     ggcttgtgaa ctagaagagc acctatgcaa cctcacacta ctacacagtt taagtgagcg      1560
     gcttcctccc atgattcgcc tgaattgggc aacccatcgt cagtctcttc gttcagcgac      1620
     gttatctgaa ttcagtgact ggttgtacaa gttggcggaa gcagcaagca ccgtaacaat      1680
     gccacagttt ccgggagtcg tcgacaacaa acctcgtcgg ggcagaaagg aggatggatt      1740
     cttaaatgcg catacagaaa cagttccgaa gccgaagcag tttgacgcta gtgctggatg      1800
     tctcgtctgc cagggtagtt gtgctgcaat agagaaatgt aagcggttcc tgtctttcag      1860
     tctgtctgct cgctgggacg cactacgaga acacaagctg tgccgcagct gcctaaccat      1920
     tcatcgtggt ccctgcaaat cagcaaaaat atgtgggaaa agtggatgcc aatacaagca      1980
     ccatcggctg ctgcacaacg acactaaagg taagccggaa acgtcatcgt ctggttccca      2040
     gagccaggct aaaggtcacc agcaagctag tgttccagtg ctacaagacg tcgaatcatg      2100
     caacacacat cgaggaggaa acaagtccgt gctgtttcag tacattccga ttgtgcttta      2160
     taacaatggg atcgagcttc acacccatgc gttcctagac agtggatcat ccctgacgtt      2220
     gatggaggaa agtttggcga aacaactgaa cctgaaaggc gagaagagcc ccctatgtct      2280
     gcgctggaca gctgatacct gtcggtatga aaaggacgcc attatagttt ccttgaacgt      2340
     ctccggaaca catcctggta gcggtcaaca tactttacgc gaagtctaca cggtgaagga      2400
     gttgaagcta ccctcgcaat ctctacctgc tgataacctt gctgacaggt actcgcacct      2460
     caggggtttg ccgattgagc cctacagtaa cgtccagccg aagattttga tcggagtgag      2520
     caacgctcga gtgatgcatg tcttggacga tcgcgaagga aaattggatg aacctgttgc      2580
     agtgaagaca cgacttggtt ggacggttta cggtacttat acatcggcga ataattcggt      2640
     gcaaccagtt cttccccaca gcttccacat ttgctcgcat tttcatggaa cggacgagag      2700
     cctacacgaa gcggtcaaaa actatttcgc tctcgatagt ctaggaatca gcgccccaaa      2760
     aaaccagctt ctttccaagg aagatgaacg agccctagca atgctacgca aagttacgac      2820
     ctttcaagac gggaggtacc aagccggcct actttggaaa tacgacgatg tacgtctacc      2880
     taacaaccga tccatggcga tgagacgtca ccgttgtctg accaagagga tggaacgtga      2940
     gccccggtta gctgaaacac tacgtgcgaa gatggaggac tacgaacgaa agggatacat      3000
     tcgtaagctg acacaagaag aaagtcgtat gactggagac cgaacatggt atttgccgat      3060
     ctttccagta ttcaatcaca acaaaccggg gaagataagg attgtcttcg atgcagctgc      3120
     atccctagga ggtgtatctc tcaattccgt gctgatgaag ggtccagatc aattgaacgc      3180
     tctgccgcca gtactgtaca agtttcgaga gcggttgatc ggcattggag gcgacgtcgc      3240
     cgagatgttt catcagatca gaatgcgacc tgaagacgaa cacagtcaac ggatcctgtg      3300
     gtgtgctagc gaggacacaa ctgagccatg tgattacgtg atgcaggtag taacattcgg      3360
     cgctacgtgt tcacccagta cagcactgta cgtcctgaac gagaacgcgt cccgattcga      3420
     gaaccagtat cccgttgctg tcgatgctat ctgccgtcgc cactacgtcg acgatatgtt      3480
     gactagcgtt gacacagagg aggaggcaat ccagttagcg aatgacgttc gctacattca      3540
     cctccaaggt ggattccata tgaggaactg ggtatcaaat tcgtcagcgg tacttgaggc      3600
     cctcggagag aatccgaagc ccgaaaagtc aatggagatg aatgcggagc tcgccatgga      3660
     aaaggttctc ggcatgtggt ggaacacgac gtccgatgtc ttcagttaca agctttgtac      3720
     ggatcgcaat cgagagcttc tgtctggcgc caaacatccc accaagcggg acgtactacg      3780
     tacactgatg gctatctacg accccttggg actcatcgca cactatctga tgtatctgaa      3840
     ggttttgcta caagagatct ggagggcgaa aaccgtgtgg gacgatccga tcgaagaaaa      3900
     gcatctggag aaatggctga cctggctacg catactgccc gacctggagt ctgtcaaaat      3960
     acctcgttgt tacttccgac acgaagccag aatcgatcaa gctaccatcg aactccatac      4020
     cttcgtagat tccagtgaaa gcggctttgc tgctgtgtcc tatttccgtt tcgaagtgta      4080
     cgactacgtc gaatgcgccc tcatcggaag taagacaagg gttgcccctc tcaagttcgt      4140
     ctccattcct cgtctggagt tgcaagcagc tgtcgtcggt acacggttag ctcgaagtat      4200
     tgcggaagga cactccatta aaatcgatcg tcgctatttc tggacggacg cgcgagacgt      4260
     catgtgttgg cttcagtctg atcaccgacg atattctcag tttgtggcct ttcgtgttgg      4320
     tgaaatactg gaggcaacag acatcactga atggagatgg ctgggcacaa aacacaacgt      4380
     tgcagatgat ggtacaaagt ggaagttcag accagacctt aagccaacaa gccgttggtt      4440
     caccggtcca ccgttcctgt ggaagcccaa aagtgaatgg ccatcttcct cgctgaatgg      4500
     cgaagaaacc ataatcgaac ttcgtgcgaa ctttctgggc cacatcgaaa gaacagtccg      4560
     taccattcta caggcagaaa acttctcgtc ttggcaacgt atgcttcggg tgacggcctt      4620
     ggttcatcgt ttcattggga acgtcaggca caagcaaaag agaaaaccaa tgattcttgg      4680
     accgctcaca caagaagaac tttctacagc ggaatcgttc ctttttcggc aagcccaggc      4740
     agacgtatac ggcgaagagt tagcagtagt tgcagcagga aaccggctga agaagaagag      4800
     tagcctattc aagctgaacc cgttcatcga cgaccacgga gtgatgcgga tcagcagtcg      4860
     attgggagag tgtgacttcg tggacgaaag tgaacggcat cctattgtac tccctcgaga      4920
     tcatccaacc acccgtctcg tcgtggccag cgtgcatcag cgttatcggc atcagtgcca      4980
     cgaaacctgc gtgaacgaag tccgtcgaga aattttacat tccacgagtg cgcagagtct      5040
     gtgatcaggt tcgkcggagc tgccagcaat gtaaggtcaa caatgcgaag cctgagccgc      5100
     cagcgatggg atcccttccg aaagcacgag tagcagcctt catgcgtccg ttttcgtacg      5160
     tgggcgtaga cttctttgga ccgtttctcg tcctcattgg ccgtcgacac gagmaacgtt      5220
     ggggtgtgat agtcacttgc ctgtcaactc gggcgataca tcttgagctt gcagcgtcgc      5280
     tgaacacaag ttcttgcatc ctagccctga ggaactgctt tgcacgccgt ggaactccaa      5340
     tagagatccg cagcgaccgt gggacaaamt ttgtgggggc ggataaggaa cttaaggctg      5400
     cggtggcggg acttgaccag gacaaactga tgactgaatt cactactccg gcaacatcgt      5460
     ggcgattcaa ccctccagcg tccccacata tgggtggctg ctgggaacgt ctgatccagt      5520
     cagttaagaa ggttctagcc atcatcaaac ctcaacggat acctacggaa gaggttctac      5580
     ggagctacct tattcaggta gaaaacatcg tcaacagccg tccactaaca cacgttcccg      5640
     tagataactg ttcgtcgcca gcgctgactc ctaaccactt cttggtagga tcgtcaagcg      5700
     gatccaaacc tctcgttccg tacacagatt gtccctcagc ggttaagcag tcttggaagg      5760
     gttcggaagc tctggcaaat cgtttctggc agcggtgggt aacagagtac ttgcccacta      5820
     tcactcgtcg caccaagtgg ttttacccag tgaagcctat tgtggtaggt gacgtggtcg      5880
     tcgtagccga tcctgagcta gcgcggaatt gctggcccaa aggacgcgtt gtatcggtaa      5940
     aaacctcttc ggatgggcag gttcgttcgg cagttgtgca gactgcttcc ggattctacg      6000
     acagacctgc gaccaagtta gctgttttgg acataggtgc aaacgatagt aagccggacc      6060
     agggtccaac tactgggggg gac                                              6083
//
ID   BEL-629_AA-LTR repbase;    DNA;    INV; 743 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-629_AA_;
KW   Pao_Bel_Ele167; BEL-629_AA-I; BEL-629_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-743
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 743 BP; 251 A; 134 C; 145 G; 213 T; 0 other;
     tgttgcgtac actttaagtg ttgcgccgca cctgatgtct acagcactta ttgaacgctg        60
     acctgtcgtt tcaagtactt tgcgcctgcg gaactgacgt acgtgtgacg gttaacgatg       120
     acatgggaga aatgtcagag atgacaacaa gaatataaaa aaacgaggat tggcaaatct       180
     acagaccggg cgtgaacaca ttatagttag tcacagttag ccttttttcg ttgttctata       240
     aagttattgt ttctataatt ctataaagtt atttgttata ctagtttcta tttatgctta       300
     cactaatttg tatcggtatc taaagtgaaa aggcaagatg tgaaaccttc tggcttatga       360
     gaagtggaag agaaatctaa agagaaaaat ctaaattata ggttagcaaa ctaggaaatc       420
     tgttccagtc gcctgcgaag aatcgcgctc aaatacagtt cgtgaactaa ggtaaattac       480
     taaaaactac aaacgagtag tctacgacta atttttgtac aaaaatagga ttattcactc       540
     ccacaccact ggtcactact gatcgattcg ttgcaagaaa aaaggaaaat gcacaaacgt       600
     gagtaaaata aaattaacct aaaaactatg cctaaatgat actttatgta acaggaaaat       660
     tttaatcgct gcgctcggaa ttgcgccaca aatatacggt tcaaagtttc ggagaagtcg       720
     tttcccttgt tgcatccgca aca                                               743
//
ID   BEL-62_AA-I repbase;    DNA;    INV; 5784 BP.
XX
AC   supercont1.350;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_AA_;
KW   BEL-62_AA-LTR; BEL-62_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5784
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.350; Positions   66610   72393.
XX
CC   'GCATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..5751
FT                 /product="BEL-62_AA-I_1p"
FT                 /translation="MQTGNTSGYNCQSCNEHDGVDTMVACDACSSWHHFKC
FT                 VGVDHTVKNRRWVCHKCEQGTFSGLLNPPQTKDKTAKSGGSKTSKSRSKKP
FT                 EKTVGSKMSITSSARAAALEAQMRLLEEEELLKEKELKEQEELQRLEFAEE
FT                 QRKLEIKKQLMEEESKLREAELSKQKDLQEKMMLLRRESMEKKKELMRQQA
FT                 ELSESSSSSHVSKSERVRDWITSQQHTKGDKVDITQQRISWPTSHIANSAS
FT                 PQQREGSLVTPRQQFSNLSLHDDDRCAVNPELPTAYMQIAARQVTGKDLPA
FT                 FSGNPEDWPMFIRTYEETTAACGFSDVENLVRLQKCLRGSALETVRSRLMM
FT                 PAGVPHVIKTLQMRFGRPELIIRSLLERIRRVAAPKPERLDTLIDFGLAVE
FT                 NLVVHLQAAKQENHLTNPVLLQELVAKLPAQLRLDWARYKLLRQDATLATF
FT                 GEFMNELIQAASEVSFDLPISLSSKAEKPKDREVFIHAHDAPDMESKNTGA
FT                 IRKTPKPCIVCSAIGHRVAECEEFKAKNVEERMQIVRQHNLCRTCLNFHQK
FT                 WPCRTWNGCNIHGCRDKHHFLLHPPTTSSPAHFSTNHSSVIREGCGRYPYF
FT                 RILPVLVSMGNKRQTIYAFIDEGSSSTLLDRSVAEQLGLDGPTEPLTLQWT
FT                 ANVARQESRSKRVNFQISGTGKAETFQITEAHTVERLLLPKQSLPYETLAN
FT                 QYPHLHGLPIAEYDSAEPKLLIGLDNLSLCVPLKIREGQNKDPIAAKCRLG
FT                 WTIYGYNARTSGPTVTVNFHVPAAQDADHELNEQLKEFISLDQSAANPTYE
FT                 MPESDADKRARKLLEETTRRVSGRFETGLLWKSDHIEFPNSFPMAVRRLEL
FT                 LEKKLDKDPTLRCRVHQKMEEYLAKGYCHRASREELKASNSKRVWYLPLCV
FT                 VVNPKKPNKVRVVWDAAAKVNGVSFNSALLKGPDMLTCLVSVLYHFREHRI
FT                 AVTGDIEEMFLRLLIRPQDSQYQRFLWRANAGDAPSVYIIDVATFGSTCSP
FT                 SSAQFVKNANAREYMEEFPRASTAIIKYHYVDDYLDSFETVQEAIEVVKQV
FT                 KMVHSQGGFNLRNFLSNSNEVLAAISDTTIEDTKQLNLVRAEKVESVLGMK
FT                 WNPSKDVFVYTVSLRDDLVEVIDSTHIPTKREMLKLVMSLFDPLGFAAFYL
FT                 IHGRVLIQDAWATGIGWDAPVNSDLSERWLQWISLLPLLNDLQIPRCYFRG
FT                 KIEETKQLHIFVDASDAAYACVAYMRASGSEGIELALVGAKSKVAPLKVLS
FT                 VPRLELMAAVIGARMAESIVSSHSFNIADIYFWSDSSTVLAWINSDHRRYT
FT                 KFVGVRIGEILALTKINQWRWLPTKQNPADEATKWGKGPSFNISGRWFCGP
FT                 NFLYHPESEWPRNQNLTSTEEESVSVHNVHYDTTSTSMIEISRFQKWERLL
FT                 RTQAYVIRFINNIRCRCKGQTADVGALKQEEIRDAERHLWKQAQKEYYGQE
FT                 QKLLLETQGSPTARHNVVQKSSTIYKLWPYIDQHGVIRMRGRIGAAWYATD
FT                 EAKYPVILPKTHLITSLLVDWYHRRFRHANHETVVNEIRQRYEISNLRTLV
FT                 KQVARRCAKCHIANAVPRPPPMAPLPEQRITPFVRPFTFVGLDYFGPLTVK
FT                 VGRSEVKRWVALFTCLTVRAIHLEVVHSLSSESCVMAIRRFIARRGAPAEI
FT                 FSDNGTNFVGANKQLRQEIAARDQVLASTFTNTNTRWNFNPPGAPHMGGAW
FT                 ERLVRSVKSAIGTIVDAPRRPNEEALQTILFDAEAMINSRPLTYVPLETAD
FT                 EESLTPNHFLLGNSSGVKQPPSELTNLRPNLRSSWTLVQNITDAFWKRWIK
FT                 EYLPVITRRCRWFENVRDFNEGDLVLIVDTTMRNQYIRGRVEKVFFGRDGR
FT                 VRQALVRTSTGLYRRPAVKLALLDVGLPGKGGQDS"
XX
SQ   Sequence 5784 BP; 1693 A; 1310 C; 1409 G; 1372 T; 0 other;
     aattctttaa gaattttgtc gctaaagatg cagacgggaa atacctccgg ctacaactgt        60
     cagtcgtgta acgagcatga cggcgtagat acgatggtcg cctgcgacgc ttgtagcagc       120
     tggcaccact tcaagtgtgt aggtgtcgat cataccgtca agaaccgccg ttgggtgtgc       180
     cataaatgtg aacagggaac cttttcgggt ctactcaacc ctccgcaaac gaaggataag       240
     acagcgaaaa gcggcggcag taagacgtca aaatcacgga gcaagaagcc agagaagacc       300
     gtcggatcta aaatgagtat aacgtccagt gcccgcgctg ctgctttaga agctcaaatg       360
     cgcctactcg aagaagaaga actgctaaaa gaaaaggaat tgaaggagca agaggagcta       420
     caacgcctgg agtttgctga agaacaacgg aagcttgaaa tcaagaaaca actaatggaa       480
     gaagaatcca agctcaggga agcggagctg tcgaaacaaa aggatttgca ggagaaaatg       540
     atgctattgc gacgggaatc catggaaaaa aagaaggaat tgatgcgaca acaggcagag       600
     cttagcgaat cgtcttcatc gtcgcacgtt tcgaagtcag agagggtgag agattggatc       660
     acgtcacaac agcacaccaa aggagacaag gttgacatca cacaacaacg gatctcttgg       720
     ccgacttctc atatagcaaa ctcagcatca ccacaacagc gagagggatc cttggtaaca       780
     cctagacaac aattttcgaa tctttcgctg catgacgatg atcgctgcgc agtgaatccg       840
     gaattaccaa cggcctacat gcaaattgca gccagacaag taactggcaa ggatcttccg       900
     gcctttagcg gcaatccgga agactggccg atgttcattc ggacctatga agaaacaacg       960
     gcagcgtgcg gattctcgga tgtagagaat ttggtacgac ttcagaagtg cctacgtggt      1020
     agtgcgctgg aaacggtccg cagtcggctt atgatgcccg caggagtgcc ccatgtaatc      1080
     aaaacccttc aaatgcgttt tggtagacca gagcttatca tccgttcgct tttggaaaga      1140
     attcgtcgag ttgctgcccc taaacctgag cgacttgata ctctcatcga ttttgggtta      1200
     gccgtggaga atttggtggt tcatttgcaa gccgcaaaac aagaaaacca cctgaccaat      1260
     cctgtcttgc tacaagaact tgtagcgaag cttccagcgc aacttagatt ggattgggcc      1320
     agatacaagc ttcttcgcca agatgccaca cttgcgacct ttggtgaatt tatgaacgag      1380
     ttgattcaag ccgccagcga agtgtcgttt gacttaccta ttagcctgtc ctcgaaagcc      1440
     gaaaaaccta aggacagaga ggttttcata cacgctcatg acgccccgga tatggaatca      1500
     aaaaacaccg gtgcgataag aaagacacct aagccgtgta tcgtttgcag cgccataggg      1560
     catcgagttg cggagtgcga ggaattcaaa gccaaaaacg tcgaggaacg aatgcaaata      1620
     gtgcggcagc acaatttgtg tcgcacgtgt ttgaatttcc atcaaaagtg gccctgtcga      1680
     acctggaatg gctgtaacat ccatggttgt cgcgataaac accactttct tctgcatcct      1740
     ccaacgacat caagtcctgc ccatttctcc accaaccata gttctgtaat cagggagggc      1800
     tgtggtcgct atccatattt tcgcatactt cccgtactcg tatcaatggg aaataagcgc      1860
     caaacaatat atgcgttcat tgatgaaggc tcctcttcga cgcttttgga ccgatcagtg      1920
     gcagaacaat tgggattaga cggacctaca gagcctctga cgctgcaatg gaccgcaaat      1980
     gttgcgcgcc aagaatcccg gtctaaaaga gtaaattttc aaatctcagg cactggaaag      2040
     gctgaaacat tccaaatcac agaagcacat accgttgaaa ggcttttgtt gccgaaacaa      2100
     tcgcttccat atgaaacgtt agcgaaccaa tatccgcatt tacatgggct acccatcgcc      2160
     gaatacgaca gtgccgagcc aaaactatta attggactcg acaatctgag cctgtgcgtc      2220
     ccactgaaaa tacgggaagg gcaaaacaaa gaccctatcg ccgcgaaatg tagattggga      2280
     tggacaattt acgggtataa cgcacgtaca tcagggccaa cagtgaccgt taattttcat      2340
     gtacctgccg cccaagacgc ggatcatgag ttgaatgaac aacttaaaga gttcatctca      2400
     ctggatcaat cggccgccaa tccaacgtac gagatgcctg aatccgacgc tgataagaga      2460
     gctagaaagt tgctagagga aaccacgcga agagtgtccg gcagatttga aaccggtttg      2520
     ctgtggaaat cggaccacat cgaatttccc aacagctttc ccatggcggt gagacgactt      2580
     gagttgttgg agaaaaaatt ggataaggat ccaactcttc gttgtcgagt acatcagaaa      2640
     atggaagaat atcttgctaa gggatattgt caccgagcta gtcgcgagga gctgaaggct      2700
     tccaacagca aaagagtttg gtatcttccg ttgtgcgtag tagtcaaccc gaaaaaacca      2760
     aacaaggtac gggttgtgtg ggatgcggca gcgaaggtta atggcgtatc ctttaattca      2820
     gctttactga aaggaccaga tatgctgaca tgccttgttt ctgttttgta tcactttcgt      2880
     gagcatagaa tcgccgtaac cggtgacata gaggaaatgt ttcttcggct tcttattcga      2940
     cctcaagaca gccaatatca gcgattcctg tggagggcaa atgctggaga cgctccttca      3000
     gtgtatataa tcgatgttgc gacatttggg tcaacttgtt ccccaagctc ggcccaattt      3060
     gtgaagaacg caaatgccag agaatacatg gaagaattcc cccgagcatc cacagctata      3120
     attaaatacc actacgtgga tgattacctc gatagctttg aaacggtgca agaagctata      3180
     gaggtagtta aacaagtgaa gatggttcat tcccaaggag gattcaatct gcgcaacttt      3240
     ttatccaact ccaatgaagt gttggcggcg atcagcgaca ctactattga agataccaag      3300
     cagctgaacc tggtgcgagc tgaaaaggtg gaatctgtgt taggcatgaa atggaatcca      3360
     tcaaaagacg tatttgttta cacagtatcc cttcgagatg atctcgtcga agttatcgat      3420
     tcgacccaca ttccaaccaa gcgagaaatg ctcaaactcg ttatgagcct ttttgatcct      3480
     ttggggtttg cagcctttta cttgatccat ggaagagttc tgattcaaga tgcctgggcc      3540
     actggaattg gttgggatgc accggtcaat agtgacttat ccgaaagatg gttgcaatgg      3600
     ataagtctgt tacctttgct aaacgactta cagatccctc gatgctattt tcggggtaaa      3660
     attgaagaga cgaaacaact ccatatcttc gtcgacgcca gcgatgcagc atacgcttgt      3720
     gtggcttata tgcgcgccag cggatctgaa ggaatagaac tagcgcttgt gggtgctaag      3780
     agcaaggtgg caccactcaa agttttatct gtccctcgtt tggaactgat ggcagcggta      3840
     ataggtgcac gcatggccga atccatcgtt agctcccatt cattcaacat agctgacata      3900
     tacttctggt ctgattcttc tacggttttg gcgtggatca actcggatca cagacggtac      3960
     actaagtttg taggagtgag aattggagaa atccttgctt tgacgaagat taaccaatgg      4020
     agatggctgc ccacaaaaca aaatccagca gatgaggcga ctaagtgggg aaaggggcca      4080
     agcttcaata tcagtggccg ttggttttgt ggacccaact ttctatatca tcctgaatct      4140
     gagtggccac gaaatcaaaa cttaacttcc accgaagaag aatccgttag tgttcataat      4200
     gttcattatg atactacatc cacgtcaatg atagaaattt cccgtttcca aaaatgggaa      4260
     cgcctactga ggacacaagc gtacgtgata agattcatta ataacatcag gtgccgttgt      4320
     aaaggccaaa ctgcagatgt cggggcgctg aaacaagagg agataaggga tgcagagcgt      4380
     catctttgga aacaagctca aaaggaatat tacggccagg aacagaaatt gttgctggaa      4440
     acacaaggaa gcccgactgc acgccacaat gtagtgcaaa agtcgagcac catatacaag      4500
     ttgtggccat acatcgacca gcatggagta atcaggatgc gtggaagaat tggagccgca      4560
     tggtatgcta ctgacgaagc aaaatacccc gtcatattgc ccaaaacgca tttaattaca      4620
     tcacttctgg tggattggta tcatcgacgt tttcgccacg caaatcacga aacggtggtg      4680
     aatgaaatta gacaacgcta cgaaatttca aatcttcgaa cgctggtaaa gcaagtagcg      4740
     agaagatgtg ccaagtgtca tatagcaaat gcagttcctc gcccgcctcc aatggctcca      4800
     ctccccgaac aacgtataac gccttttgta agacccttta cgtttgtcgg gttggattat      4860
     ttcggccctt taacggtgaa agtcggacgc tccgaagtaa aacgctgggt agcacttttt      4920
     acgtgcctta cggtgcgtgc tatacaccta gaagtggtac atagcctatc cagtgaatcg      4980
     tgcgtgatgg ctattcgacg cttcattgca cgacgcggtg caccggccga gatctttagt      5040
     gataacggaa ccaattttgt gggcgcaaat aagcaactgc ggcaggaaat tgcggctaga      5100
     gatcaagtgc tagccagtac attcactaac accaataccc gatggaattt caatccaccg      5160
     ggtgctccac atatgggcgg ggcatgggag cgtttagtgc gctccgttaa aagtgctatt      5220
     ggaacaatcg tcgatgctcc acgacgcccc aatgaagaag cacttcaaac aatcttattt      5280
     gatgcagaag cgatgattaa ttcgcgtccc cttacttatg tgccactaga gactgcagat      5340
     gaagagtcct taaccccaaa tcattttttg ttggggaatt cctctggagt gaagcaacca      5400
     ccctcggaac tgacaaacct tagacctaat ttgagaagca gttggacatt agttcaaaac      5460
     atcactgatg ccttttggaa gcgatggatc aaagaatatc ttccggtcat tacccggcgg      5520
     tgtcgatggt tcgagaatgt ccgagacttc aacgaaggag acttggtatt aattgttgat      5580
     actactatga gaaaccaata cataagagga cgtgtagaaa aggtattctt tggacgagat      5640
     ggtcgtgtgc gtcaagctct tgtacgcacc tctaccggat tatacagaag accagcagtt      5700
     aagcttgcat tactcgacgt tgggctacct ggtaaaggtg gtcaggactc ctagaaccgt      5760
     caccatcctt tacgggtggg ggga                                             5784
//
ID   BEL-62_AA-LTR repbase;    DNA;    INV; 640 BP.
XX
AC   supercont1.350;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_AA_;
KW   BEL-62_AA-I; BEL-62_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-640
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.350; Positions   65970   66609.
XX
SQ   Sequence 640 BP; 219 A; 96 C; 129 G; 196 T; 0 other;
     tgttacgtcg accagcaagc ccctcgtacg gacatccatt tgtgaatagg tcgaaatgac        60
     agcacctatc tatgacagcg agaaatgttt atgcgtgttg gaagaacgat ggcaggtttg       120
     tcatatgatg atgattggca aaaattgaag tagatcgatg gctattgttg gattaaaagt       180
     ataaagttta cggatttcag aattaaaggt ttagctaatt gagtgaagta attgaattcg       240
     agttggtaag caagtcattt attcgtgatt atcgttgata attataaaat tgaattgttt       300
     aggtgtttat gcatccacat ttccacccac gttgaactag gagaattaga aaagttctgg       360
     aaagaaaatt aaatttataa gtaagtttgt tattgaattt ctctaagatg cagtgtacga       420
     aattaataat taaccatagg ccaacccatt gacagctgga ttgtcagata acaggagagg       480
     aagataccta atctgtatct gtggtagaac accaaaattg tgagtccaca taaaatcatt       540
     tataccttta actctaatca caaatacaaa tttcagctta aagcgcttca ctacaaacaa       600
     cagttgtgtt ttgctaaaaa gattggtgat cgtccgaaca                             640
//
ID   BEL-62_CQ-I repbase;    DNA;    INV; 2580 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_CQ_;
KW   BEL-62_CQ-LTR; BEL-62_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2580
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 277-277 (2011).
XX
DR   [2] (Consensus)
XX
CC   'ATACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..2578
FT                 /product="BEL-62_CQ-I_1p"
FT                 /translation="MQETYQNCGVCLGDQRDGSMIACQSCREWFHHQCVGV
FT                 FSTIVNGFWTCVLCLNLPSHERFAKLLKFGTAPTRTNSPVIASGSSPAVVT
FT                 TAITTSSSPLSMQPSVVGSLTTCRDQGEQHVAGRSYSADESSEDWLSKKIN
FT                 VMKNLLITPVCSSKAARTFVSNSFASTTTGAVNGYSVESCTPSFNSQNQLL
FT                 YGSLQSQQLPPPHHGRSQQQQVEPQQSRQQSQQDGPQPKQAWLQLQPPLVP
FT                 TPQQLLARQVMPKDLPKFYGNPEDWPLFSSAFTNTTDACGYSNVENLARLQ
FT                 EALQGKALEQVKGRLLFPALVPQVMSTLYLLYGRPELIIQTFLDKVRQTPA
FT                 PTLDRMETLISFGLTVQNLCDHIETSGQVSHLQNPILLRELIEKVPAQQRL
FT                 EWAFYKQQFRTVDLRTFAGFMSMLVAAATEVTFPSARKHTRNESEEQENDQ
FT                 ELCSSRSAGRAHRKRSSREGREQPENVKQSTCWACSGSEHKVKDCEMFKRW
FT                 DSHSRRKLIEYRDLCRACFGKHGRRPCNAKHLRRGQYQLQKKQKTPEQETD
FT                 GEVGLIVHHTCQNSTLFRILPVKLSWNGNTVETFAFLDDGSDMTLVEQSIA
FT                 DRLGIDDGEPVPLCLSWTNKVTRKEPKSQRIRLEIAEKGRSEKYTLKDSRT
FT                 VASLDLKTQTLDFGELAQKFPYLRGLPVSSYQAATPKILIGTNNANLTATQ
FT                 NLREGQIREPLASKTRLGWTIHGYAEDEQKHKGYSFHVSGHREDHISNKQK
FT                 HKHTERFDTSTNKKRLTPETSHKGANTDGLFKNQQFLAQSDGLLQRVGDHQ
FT                 QRPKTVFGLLGHAYCSPKDVGKAQSTAEPEVHYGSG"
XX
SQ   Sequence 2580 BP; 750 A; 638 C; 635 G; 557 T; 0 other;
     ttctcaaaga tttaacctca aaccgaaggt ttgcttttgt ttggtatacg acattctcga        60
     agagatgcag gagacgtatc agaactgcgg agtctgcctc ggagaccaac gtgatggcag       120
     tatgatcgcc tgtcagtcgt gtcgagaatg gtttcaccac caatgcgttg gagtattttc       180
     aactatagtc aacggtttct ggacgtgtgt actgtgtctg aatctaccct cacacgaacg       240
     atttgctaag ctcctgaagt ttggcactgc acctacccgg acaaactcgc cggtaatagc       300
     atctggatct tcaccagcag tggtaactac agctatcacc acctcatcct cgccgctttc       360
     gatgcagcct tcagtcgtgg ggtcgttaac tacgtgtcgt gaccagggag agcaacacgt       420
     tgcaggtcgt agctatagtg cagatgaaag ttctgaagac tggttgagta agaagatcaa       480
     tgtgatgaaa aatctattga tcactccagt ttgctcatct aaagctgcca ggacgtttgt       540
     atcaaacagt tttgcgtcaa caactacggg agctgtcaat ggatactccg tcgagtcgtg       600
     cacgccatcg tttaacagtc aaaatcaact attatacgga tcactgcaat cgcagcaact       660
     gccgccacca caccacggac ggtcacagca gcaacaggtt gagccacagc aaagcaggca       720
     gcagtcacaa caggatggac cgcagccaaa acaagcttgg ctgcagttgc agccacccct       780
     ggttccaact ccacaacagc tattagccag gcaggtcatg ccaaaggacc ttcccaagtt       840
     ttatggaaac cctgaagatt ggccactctt ctcgtcagcg ttcactaaca ccaccgacgc       900
     ctgtggatat tctaatgtgg agaacttggc acggcttcag gaggcattgc aagggaaagc       960
     ccttgaacag gtgaagggcc gactgctctt cccagcgctc gtgcctcagg tgatgtccac      1020
     tctttatcta ctatacggaa ggcccgagct gatcatccag accttcctgg acaaggttcg      1080
     ccaaactcct gctcccacgt tagacagaat ggaaacgttg atttcattcg gattgactgt      1140
     gcagaacctg tgtgaccata tagaaacatc aggccaagtg tcacatctgc aaaatccaat      1200
     cctgttgcga gaactcatcg aaaaagttcc agcacaacag cgtctggaat gggccttcta      1260
     caaacaacag tttaggaccg tcgatctgcg cacgtttgct ggcttcatgt ccatgttagt      1320
     agctgcagca acggaagtca cgtttccttc agctaggaag cacacacgaa atgagagcga      1380
     agagcaagaa aatgaccagg aactctgcag ctcacgctca gctggccgag cacaccgaaa      1440
     acggtcgagc agagaaggac gtgagcagcc ggaaaatgtc aagcagagta catgttgggc      1500
     gtgtagcgga agcgaacata aagtgaaaga ttgcgaaatg tttaagcggt gggattctca      1560
     tagcaggaga aagttgatcg aatatcgcga cctgtgtcga gcgtgttttg gaaaacacgg      1620
     acgacgacca tgcaatgcaa aacatttgcg cagaggccag tatcaactcc agaagaagca      1680
     gaaaacaccg gaacaggaaa cagatggcga agttggtttg attgtacatc acacttgcca      1740
     gaattccacg ttgtttcgga ttcttcctgt taagctttcg tggaatggaa ataccgttga      1800
     aacatttgcg tttttggacg acggctcaga tatgacactg gttgagcagt ccattgcaga      1860
     tcgtttaggc atcgatgatg gcgaaccagt tcccctttgc ctatcctgga ctaacaaggt      1920
     cactcgaaaa gagccgaagt cacaacgcat ccgcctagaa attgccgaaa agggaagaag      1980
     cgaaaagtat accttgaaag actctagaac agttgccagc ttggacctga agactcaaac      2040
     actggatttc ggagaattag cacaaaagtt cccgtacctt cgaggactac cggttagtag      2100
     ctaccaagcg gcaacaccaa agattcttat tggcacaaat aatgcaaatt tgaccgccac      2160
     acaaaacctt cgcgaagggc agatcaggga gccccttgct agcaaaacac gtctgggctg      2220
     gactatacac ggatatgccg aagatgaaca gaagcacaaa ggctactcat ttcacgtttc      2280
     cgggcatcga gaagaccaca tttcgaacaa gcagaaacac aaacatacgg agagatttga      2340
     cacttcgacg aacaagaaga gacttacgcc agagacatcg cacaagggcg caaatacgga      2400
     tggactcttc aagaaccagc agttcctggc gcagtcagat ggtcttctgc aacgggtcgg      2460
     ggatcaccaa caaagaccta agactgtatt cggactgcta ggtcacgcgt actgcagccc      2520
     caaggatgtt ggtaaagcac agtcaacagc ggagccggaa gtgcattacg ggtcggggaa      2580
//
ID   BEL-62_CQ-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_CQ_;
KW   BEL-62_CQ-I; BEL-62_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-491
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 278-278 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 491 BP; 176 A; 90 C; 96 G; 129 T; 0 other;
     tgttgcggtt gctggcagta cgggaaaaag caaacgacac ttctttagcg agattagacc        60
     ctttgggaga gtattctaca actgccaaac gtctaacccg cttaagaaac atgggaaaag       120
     gaaaacaaac aaataccgga gacacataga cattaaaagt ggattccaga taaacgtaga       180
     ttaatttaat taatcctgat gtgctcaaac aagtaaatgt aagataattt ccacataatt       240
     tgatcctcaa aggcaattat ataacaatat ttgtgtgaca gggcaaacca gcaccagcag       300
     caattgttgt ggtcgaacga taaggattgc acctacagag gaagactaaa tgtgagaatt       360
     tgattattaa cctattttgc tctacaataa taacaataaa ttgtttcagc tttgagctgc       420
     ggctaagaac agaatcgatg tcgctgctgc aaaaactttc tttagttgat ccgaaattcg       480
     tcgtcacaac a                                                            491
//
ID   BEL-62_DTa-I repbase;    DNA;    INV; 8094 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   21-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8094
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5654-5654 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 8094 BP; 2821 A; 1571 C; 1570 G; 2129 T; 3 other;
     ttggtgaccc cgaccagtgt atgaaattct agtcaacttg gcgactaatt tcwacacata        60
     cgaactagac agattctcga tcaactkggc gatcgaatca tctagatttt tatgttgtct       120
     taaatctgtt tttatsattt gattaacaga aaagataact agggaaatct ggctcgaata       180
     aaactccgac cgttttcccg aacaacttga acattgtttc aaggagtaac ttatcaactt       240
     ggcgatctgt tacgaaatta ttggaagtca acttggcgac tccaatattt aaacaattta       300
     taagtagaag tagtcaactt ggcgattctt cttactttat taacaacaaa aaataaatcc       360
     gatttactgg agtcaacttg gcgattccca ggataatcgt cgatttaaat ctcaaattta       420
     aagtagtcaa ctggcgactc tttatacata tcttcaaaaa taaatccgat ttactggagt       480
     caacttggcg attcccagga taatcgtcga tttaaaccca aatttaagta gtcaactggc       540
     gactcttata atatcttcaa aaataaatct gatttactgg agtcaacttg gcgattccca       600
     ggataatcat cgatttaaaa tctaaatttc aagtagtcaa caaggcgact cttgaaatac       660
     atcaaacatt tgaaaaatag aatattttat atacaaatgg tgttaataaa ataaaaattt       720
     taaaaataaa ataattggct atattttcta atccaaaaaa ccttacgtgt ctttgaccac       780
     taaatcggtt gcgagtagaa gcgtatccag cttaattaaa gcgaataaat taacttccca       840
     cgggtcagac acgttagtaa ggaaaaaatg gaggttgaaa aactgattgc cattcaaagc       900
     caaattggtg aagagatcca agttgtgctt agaaacatca aaaaggattc tcacacaaga       960
     aaagaaaagg ttacgtattt cgaagatagg aaacgacaaa ttgaagatct gtggaaatca      1020
     ttcgaaaaag gaaataaagc tattcttgaa gaatctaaag gtgctgcagt attgcatgaa      1080
     tatttcgaaa agaattatta tgagcagatg aaattaattg ttcataaggc tatggaagaa      1140
     ttcaatgcta aaattctgca atttccgaca ttagaggcca cgtctgatga ggtggaacaa      1200
     atcaaaaaat tgattagaca ccaagcagcg gttctggatt cgatgtctcg aactatgaat      1260
     caaatatgtc cagacaataa atttacctat aaaacggtaa tcgacaattt atggaaacaa      1320
     attgaaagtc tgcattttga aatccataaa gtatgtatcg aacctgaaaa ggcaggttac      1380
     agtatggaac gatttatctc cgctgaaaag gcaatgctac aattttgcca accatcaact      1440
     gatacagttt caatagccac taatcatgcg gtaccttcga tttcatcaat tcaattgcca      1500
     aaggtttcca ttccaaaatt tgatggtaac tacttaaaat ggcaacaatt ccatgacatt      1560
     tttaataaaa tggttcatga atcagcgata ccaaaaatac aaaaaatgtg gtatcttaag      1620
     gctaatctgt ctggagaagc agaaagatta gtaaggcatt tagagttaac agaaattaac      1680
     tacgacactg cctggacaat gctgaaagaa cgttttaata ataagcgtgt gctgtctacc      1740
     gcaatatttg aaaaactttt tgatcaccct aacgtgtcaa atgattctca atcaataaaa      1800
     aatctgcatg acaatgttaa tgaatcgttg caagcattaa gaaatatggg aattatgact      1860
     gacacatggg atccggttct aatttttcat atgacaagaa aattagaccg aattactcat      1920
     actctttatg agcaaacaat attagacaca agggaaattc aaacaataaa agaatttctt      1980
     gcgtttctag aacaacgatt tctggcactt gaagccatcg gtggaaaggc gcataaggaa      2040
     aaacatagaa caagtgcctc tgcaacagca agttcatacg cctgcctgtt ttgtcaaaaa      2100
     gggcatagca tatacaaatg cgataaattt aaggaaactt ctcctgctga aaggctgtct      2160
     tgggtccagc gaaagaaact gtgtgtcaat tgcttaaagg cagaccacat gtccaaacaa      2220
     tgcatgtcta aatatacatg catgaaatgt aacaaaaaac acaatacgtt gttacattta      2280
     agtaacggaa aatctaatac tgaacaaaaa acagctgctt ctgctgcgac aaacagtatt      2340
     gagaaaaggt acacactgtt agcaacggct agagtgacag tacaaggaac caatcgtcga      2400
     gaaggagact ttcgagcgct ccttgattcc ggttcacaga tcaatttaat ctcggaaaga      2460
     ttggtaaagc ggttatcgtt aaaactctcc ccaacaaatt tacgaattga gggaattgga      2520
     ggccagccgc gaataagcaa aggacgcgtc agtgtgttaa tcaaatcaaa acatagtgac      2580
     ttcgaaacaa gagttgaagc ctttgttctc ccgcacatgg tggcagatca acccactgaa      2640
     caattaaaaa taaccgatct aaaaatatcg aaaaacatta atcttgcgga tcccaatttt      2700
     gatcgaccag gaaaaattga tttgttgcta ggcgcagaac atcatttttc cattattaaa      2760
     cctgagcaaa taaaaacata tccaggtttt ccaattctac aaaatactga attgggttgg      2820
     atcgttgctg gaaaggttaa catgagtgca aaaatgccac agaactgcat ggtagtttcc      2880
     tcagctgagg aagcgaaatc atcgttggaa aggttttgga agttggacca attagagcca      2940
     attagaaaat acaggactcc agaagaaagg cactgcgaaa agcactttat taataatctt      3000
     cagcacgcac aagatggcag attaatagtc agattaccgt tttctgaaga tccttcagcc      3060
     ctgggcaagt cttgcgatat cgctacaagg cgcttctatt cgttggaaaa aaggacctgt      3120
     ccagaaatta agaggatgta caacgaattt atggcagaat atgaaaaact tggccatatg      3180
     aagcaagtga tgccggaaca aataccgaag gctcactact tcatcccaca tcattgtgtt      3240
     ctgaaaccag agagcactac tacgaaatta agagtagtct ttgatgcctc ctgtaaaacg      3300
     tcgtcaggaa aatctttgaa tgacgtgctg catccaggac cagttgttca gagtgatctg      3360
     ttctctatat tattgagatt cagaactcac aaatatgtct tcactgcaga cattgaaaaa      3420
     atgtatcgcc aagtatggtt gaatccaaat gatcaattta accaaatgat tgtttggcga      3480
     tatgattcaa atgaaccaat aaagtattat aggttaaaga cggtgacata tggcacaaca      3540
     tcagctccgt tcctggccac taaatgtttg gaacatttag ccaacattaa ctctgaaaaa      3600
     tggccactag gagcagccgc attaaaaaac gatttttatg tggatgattg cttgaccgga      3660
     gcagacacga tacaggacgc agaaaggatt caacaagaac taaataaaat cctgctgccg      3720
     tgcggattta aactaagaaa atggtgctct aatacacacc aattattaaa aggattccta      3780
     cctgaagacg tcgtcagcac cataaatttg ggtgcagctt tagaacatac cagtgtaaaa      3840
     acactgggaa ttatatggac tccaaaggac gatcatttgt gtggcagagc acaagagcaa      3900
     aaaactcaga gcattactaa aagagtggta gcttctgagg tcggtcaaat cttcgatcct      3960
     cttggcctgt tttcaccagt gataataagg gccaaaatat ttctgcaaac cctgtcactt      4020
     caacaactgg attgggatac ggaaatatca gattccctaa aggaaaggtg ggaggccatc      4080
     agacaggatc tgcaacattt aaacaaaatg aaaattccac gtcacattta tgatgggaaa      4140
     gtcccacaaa aacaggagct acacatattc gtggatgctt ctgagagggc atttggtgca      4200
     gctgtttacg taagagccat ttataaaaac aaacaaacaa ctgtacgttt gttgtgcgct      4260
     aagtcaagag tagcgcctct agaaaaacaa accctaccac ggttggagtt gtgcgcggct      4320
     gttctaggag ccgaactagc cgacaaagtc aaaaaggatc taagacttaa cacagaatcc      4380
     attaaaacat tttactggac agattcaaca atagtacttt gttggatcaa tgcaaaggca      4440
     tcgaatttcc atacattcgt tgcaaataga ttgtccaaaa tacaagacac atccagtcca      4500
     aaccaatgga gacatgtgtc atcaaatctc aacgccgcag atgtgttatc aagaggaatc      4560
     cccgcagctc aattaggcgc acacacttta tggttatacg gaccactatt tcttcacgga      4620
     cctgaagaga aatggccatc cctctttaag gcccctaaag acaacagcat ctcattggag      4680
     agaaagctaa aaatagtcac tcttgcaaca agttcggaag gagacgaaat ataccgtatt      4740
     aaccacggaa actcatttaa tcgtctacaa cgtataattg cctatatgtt acgattctgt      4800
     tatcgtaaaa acaggaagga tacagtgctg ctagagttgg acgaattgga acaagccagg      4860
     aggataatag tacgatgtgt acaacaagct gacttcgcag atgagctgaa acatttacat      4920
     cgacatcctg aacgaccgat acccagcagc agtaaggtgt cctctcttga cttgtttttg      4980
     gacgaaaact ctattattag agtaggaaca agaatcgaaa acgcaccaat ttctcgtgat      5040
     gcaaggaatc catatttatt gccttacaac gacgaaattg tgaaaatgtt gttagtaaaa      5100
     ctacataccg aaaatatgca ttgtggccaa aataccttga agggtattgc tcgacaacaa      5160
     tatcatattg tcaaagccac ttccatggtt aggaatgtaa tcatgaaatg cattccatgc      5220
     acaagatatc gtccaaaatt gatgtcgcaa gttatgggaa aactacctga gcatagggtt      5280
     tctcaaaata gaccattcct aaactctgga gtggattttt gtggaccctt gaagattcat      5340
     cacaaggtcc gaggcaagcg acctgataaa gcatacatcg ccgtatttgt atgttttgcg      5400
     acgaaggcgg tacatctgga agtcgttgga gatttaacaa ctgcagcatt tcttggagcg      5460
     ctacaaaggt tcataagccg tcgtggaagg tgcaaaactt tatactgcga caatgctaca      5520
     aactttgtag gagccaacaa ccagctaatg gaattgaagg aaactataca ctctcaggaa      5580
     gctaagaact ccatagtgca gctatgtaac acaaaaggaa ttcaatttaa attcattccg      5640
     ccaagagcac ctcactttgg tgggttatgg gaagcagcag taaagtcagc aaaaacatta      5700
     ttgttgaaaa aggtgaccac tgctgagctc acgtttgagc agttaagcac agttataaca      5760
     aatgtcgaag ctgtgttaaa ttcccgacca ctaactccaa tttctgatga tccaaaggat      5820
     ctgacgttca ttacacctgg tcatttcctg attggagagc cacttgtagc acaaccagat      5880
     cccgagccat taaaaataaa atccctatct gcacagtggg atcaggtgca gtcactgaag      5940
     cacacatttt ggatgcaatg gtccagtgaa tacttaacaa gtcttcaaca acatcctaaa      6000
     tggaaaaaag catatcaaaa cgtaaaagag ggcatgatgg taattctaaa agaagacaat      6060
     gtgcctatgc ttcattggcc cattggacgg attttaaggc tccttccagg cccagatgga      6120
     tatgtacgag ttgtagaggt tgacactcca aagggtgtat tcaaaagagc gattcataat      6180
     cttgctccac tttttcgtca agaggatcca ggagaaaaac gtaaggatat aaatgacgaa      6240
     gatgagaagg atgagaagga tgatcaggaa ccaaaaaggc gcaaaggcac aacccttccc      6300
     ctcctgtcaa tgcccttgct aatccttcta ctgctgctac cactagctgc ggcaagtcca      6360
     ataaatataa ccaggttggg atcaaaacct ggaatttact atgaaaaact tgggacaact      6420
     caactggaaa ctgctgattg gacaattatc gcatattacg atttaaaacc ttatttggag      6480
     gacgtaaaaa cattttacct tggaacgata aaggtcggcc aaatgtgttc tcacatacaa      6540
     ccagtacaag catgtgctgc gttatacatg cattttcaac acgtcgacga ggaaatccga      6600
     actgagaatg agttactcca tatgtccagg aatagacgct cgccgctgaa cattgttgga      6660
     aatattgcca gcagtctctt tggagtattg gacacggagt atgccaaaaa gatgtcgttg      6720
     accattgaaa aggtcaaaac gaatgaagat tatctcttgg aattggtgaa gaatcaaaca      6780
     tcaataattg attccaccat aaatataatg aaaagagatg aggccgccat tgacagaaga      6840
     atcagaatca tgaaccagca aagagtggat ttaaccaacg cgcgacttga ttcgttaaaa      6900
     acctttcaat ggtatatagc actaaccaat caattgagtg tattggcggc cagtattcaa      6960
     agagtccagt cagaaatttc gcatgtgttg acaaatgttc atcacaatga aataagtccg      7020
     ctgctcgtat cgccaaagca acttcaagag catatacata aacttaaaac tcatatgcct      7080
     caaggaaaaa tgcttcccat gattaaggac gatgtgttac aattgtacaa gttgatgaaa      7140
     gcagaagcaa aggttgtaaa ggattatgtc atcttcaaaa ttacactgcc tttgatctca      7200
     acgcagcttt ttgagcttta taatttggta ccaatacctg tgatagtcga caacaaaatg      7260
     atatcactgg atattgaaca tccaattata gctgtgaatc aacacagaga tcaattcatt      7320
     gctatgacag ctaaagaatt tgatctatgc aagtccatta acgaggacgt atatatttgc      7380
     tcagataagc aaatgatatt ttcaattgac aatcactgcg aatttcaatt gtttaataac      7440
     aaatcgtcgt cactatgcca aactgtgaca tctacgaaat ccctttcatg gcaaagacta      7500
     aaggccaaaa atcaatggat tttctcaatg caagcaccaa tggagctctc tgcagtatgt      7560
     ggcgatcaat tatcaaccat taatattgat aatactggac ttctagtttt ggacccaaag      7620
     tgcactctac gaaactcaat tcttagtgtg attggccatc aagtgacgtc aacaggagcg      7680
     atgaaattgt catatgctcg atttggcaat ttaaatcaat cgtctgcagc ggatactaag      7740
     atttcaaatt taaataattc attgaagttg agttataatg agctaaatga tcttagtaag      7800
     gaattacttc ccaggctcaa aataaaaatg ccaacagaga tcattgatct accacaccac      7860
     cacataagtg cctatgttgc cttgtttttg tcactcggag tcatagtcgt ttacttgtgg      7920
     aaacgattcc aaaagaagac acctccacaa acgtcatcat cttcaaagga catcgaacta      7980
     gcagaacaac ctcggttact cagctcatca aggatgcacc atctgatgcc ttcgtccgac      8040
     gcctttgaga tcaacattgg atgatgttga acacctgttc aacggccggg agta            8094
//
ID   BEL-62_DTa-LTR repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   21-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-62_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-423
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5677-5677 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identity to consensus.
XX
SQ   Sequence 423 BP; 130 A; 107 C; 65 G; 121 T; 0 other;
     tgttagcgcc tgcacttgag tccctaagat gtcaacagca gccacagcca gcgccagctc        60
     aaaccccgct acctgccgtt ccagcattct atttttacta accctagcct attaatccct       120
     tgcatgggag acaaattgta tgactttgta tttctgtata tcttagaacc taagtgatgc       180
     aatgtattta taactaacaa acccccatgc gataccttcg ccatggtggc ccccttgact       240
     ctgaaatcat gtatataaac cccagatatt cccaaataaa atcagtactc aagcaatact       300
     tgtgtattca acatctccga gttaacccaa tttaagtgtt ggtttagcgg cctactgtca       360
     ctagattatg ttctaggggc aacctaaaat tataaaacaa taaaaagtaa ttctacaaac       420
     act                                                                     423
//
ID   BEL-630_AA-I repbase;    DNA;    INV; 7475 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-630_AA_;
KW   BEL-630_AA-LTR; Pao_Bel_Ele231; BEL-630_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7475
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [6536-7093] - Integrase core
CC   'ATATC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1359..4217
FT                 /product="BEL-630_AA-I_4p"
FT                 /translation="MEKNPPTARSLSRRSSSSTARARILLDLKRLEDERIL
FT                 QEKAEEKVSREKEYLAKKYDLMQAQLEEEEEGSLRSRRSMSSIQLVEQWLQ
FT                 NEPVANSGSGIGCSGIPAGTELRTGTVHKQKPSATTTFAAASTPKSGQQAE
FT                 LTFGLNPSLPLAQGATSEANCGQPAEPEFHAQDPLDWSLTWDVPVAHQPLP
FT                 KGQFAVDLQEIQRKFLGVQLCPPKPYTQQVGPSSSSQPASGNHPVASVHGT
FT                 SSSQQENIATIPATTGGPQPCQVILDPTVSQHDQSSGLEALTTKQYAPAAV
FT                 TTVSQLCSDYIIPQNRTNALHPNATFKVPKLSSLIEHTPFGVTEPYKPPQP
FT                 LRSDTSTFHPMYKSTPYVRPVTAPSVHFADHPVASSSGLPILPNVRTVPSN
FT                 PTPVVSSIAVNSGHTIPIPPSDSTSALVPATEPWISAPTSQQLAARHIVPK
FT                 ELPIFSGDPVEWPLFASCYQNTTQLCGFSNGENLMRLQRSLKGNALEAVRS
FT                 LLLEPSSVPLIVTTLQTLYGRPDLIINSLLHKVRATPSPKPDKLETLVSFG
FT                 LACQNLCGHLRAAGQQAHFSNPALLQELVNKLPANIKLDWALFKQKCATVD
FT                 LGTFGDYMAQLVVAASDVASFQPSEETRFQSDKRKGKERLFVNAHSSGTPP
FT                 ENVGRRQQAGTYESKQNQPKPCPICEKPGHKVRECDAFKKCSLEDRWKRVQ
FT                 ELYLCRRCLIAHGKFPCKASLCGMDGCEERHHKLLHPGKPEPAKPSKPTKP
FT                 TETLNIHNQRKMTTLFRIIPVTLFGNGRSVHTFAFLDEGSSSTLIEARVAR
FT                 ELGVKGEVYPLCLQWTSDIERTEDKSQLIRLEISGRGTSKRHVLKAAHTVE
FT                 KLCLPNQTLPFDQLSEQFPYLRGLPIEGYSNATPTVLIGVDNTHLKIPLKI
FT                 REGKIGQPAATKTRLGWTIYGEIPGETSSIERFHYHLFEERRSPDDEPW"
FT   CDS           5257..6201
FT                 /product="BEL-630_AA-I_1p"
FT                 /translation="MRKSLQICSVNGVGGSNCWDNWMQFAFRGVIFRDTIR
FT                 KASNLLSCTYSSMLARRRTWRLRSSELWTDLKRAVLLVSSKTKVAPLKPLS
FT                 VPRLESQAALLGVRLAKSVAENHTLVIVRRFFWSDSTTVLSWLQSDQRKYR
FT                 QFVACRVSEILDTTKVDEWHYVPSRLNVADDATKWKDGLQINSNHRWFRGP
FT                 SFLYDPPRTWPKPKELPGATAEELRPVHVHQEKAEQQLVQFCRFSKWERCL
FT                 RAVAFVHRFIDQLKRKRRDEITKDPRILTREELQRAENTILRLAQFEVFAD
FT                 EIITMAKKSVTATGSTSAFGENK"
FT   CDS           6251..7405
FT                 /product="BEL-630_AA-I_3p"
FT                 /translation="MDSRISSFSEALYDFKYPVVLPKSHYVTQLIVDSYHR
FT                 RYNHCNGETAVNEMRQRFHLSEMRAAFRKSRKICSWCRVYKATPSVPRTAP
FT                 LPEARVTPYVKPFSFVGLDYFGPLLIIQGRHEVKRWVALFTCLTIRAIHLE
FT                 LVSSLSTECCKMAIRRFIARRGAPSEIYSDRGTNFVGVSGELREQIRGINS
FT                 DLASTFTNTITQWRFNPPASPHMGGAWERMVRSVKCALAALSAERKPNEET
FT                 LVTLLVEAESVVNSRPLTYMPLETAEHEALTPNCFLLLSTSGANQPPSQLS
FT                 DGKLALRSSWALYQRLLDQFWVRWVKEYLPTITKRTKWFVESKPVSAGDLV
FT                 MIVEDRLRNGWIRGRVLVCSLDEMGDVVAQMSKLQPAFYAVQ"
XX
SQ   Sequence 7475 BP; 1978 A; 1851 C; 1794 G; 1851 T; 1 other;
     aaatctttta gattttcatc tgtgaaagca acaattagct gttatcaacg caatcttcgc        60
     cacgcgggtg cagcagttcg caatggcggc ggcctcattt acttgtgtat gcggtcggcc       120
     aggtgaaccc gacgaagaga tgctgcagtg cagtgattgt ttacgaccaa ttcatctcgc       180
     atgtgcttca tctagaccag tgtttcccaa acttttttga ctttcgcccc cttgagacca       240
     atattttttg gtatcgcccc cctgatatga aatctaaaca tttgtactaa gtgttacact       300
     tacgttgaag tttggatcaa tatctcatca ttagtatacc aaacattggt caaatttaaa       360
     ggatgtagca gtcaatcata atgcttcaat aaaaataccg caaaagagtg tctactactt       420
     gtatgtccat aaaggagtca tgtaatatct atcatatgca tcaattgcct ttgtatcaac       480
     aaatctgatg tgcgatcatc aaaaaaaagt cagctcactt tctgcttttt tgtcttcttt       540
     ttttaatgtt tcttaagttg ttcaaataaa cttataaaat ttcgggtaat acattattgg       600
     ctgttctgga aacaattgaa tctatatgca aaatataaga aaatatcagt aaacccagac       660
     ttttttcaac tcataattca ctgaaatata acgttcaatt tagatatttt aaagctttga       720
     tccatgaaat tttatgtcgc tcaggcctat ttttgagtag ggtgatttat gtttgtggta       780
     tttaatgatt ttatcattga aacccgattt ttgtcgacca aagtcacatg gatttgttta       840
     taatatgatt tgtactataa atactattta gtgtgcgtat taacaaaata tacaaatgag       900
     tactttaata aatgtgtgaa acataataaa aacttaaggt gccttattct gaagattccc       960
     taataaaaag tcaacaaact ttaccttaga cttggaaata aatattacac atcgccaaaa      1020
     gtttctgctt tcaaaaagca ttcaatatta tttttagcaa gaactaatta gatccgaacg      1080
     agaaccgata aattagttag gtgtcaacta aattcttctt cagatgtata tgctatcatt      1140
     aaaatatgag tgcctcttcc aaactttgaa tctatttttg attttcagtt gcttccactt      1200
     tcgccccctt tctagcattt tcgcccccca aattcagttt tataaatttt cgcccccttg      1260
     gacctgaaaa tcgcccccag gggggcgaat tcgcccactt tgggaatcac tgatctagac      1320
     gttccattgg tggaagctgc gttgtgtgcg ttcggtgtat ggagaagaat cccccaacgg      1380
     cacggtcgct ttcgaggaga tcgtcaagtt cgactgctcg tgcgagaatt ctcctggatc      1440
     tgaagcggct ggaagacgag aggatcctgc aagaaaaggc cgaggagaag gtttcgcgwg      1500
     agaaggagta tctggcgaaa aagtacgacc tgatgcaggc ccagctagag gaggaggaag      1560
     aaggcagctt gagaagccgt cgctcgatgt ccagtatcca attagtggaa cagtggcttc      1620
     agaacgaacc cgtcgcaaat tcaggctctg gcatcggatg cagtggcatt cccgctggca      1680
     cggaattacg caccggtacc gttcacaagc agaaaccatc ggctacaacg acattcgctg      1740
     cggcttcaac gccgaaatcc ggacaacaag cagagctcac cttcgggctc aatccaagcc      1800
     tgccactggc ccaaggcgcg acttctgaag caaattgtgg gcaaccagct gagccggagt      1860
     tccacgcgca ggatccattg gactggagcc taacttggga cgtacctgtc gcacatcaac      1920
     cgctaccgaa agggcaattc gctgtggact tgcaggagat tcagcggaaa ttccttggcg      1980
     tacaactatg tccgccaaag ccgtatacac agcaagtggg tccatcgtcg tcaagccaac      2040
     ctgcgagtgg taaccacccg gttgccagtg tccatggaac aagttcgtcg cagcaggaga      2100
     atatcgctac aataccagcg acgacaggtg gtccacaacc gtgccaggta atcttggatc      2160
     caactgtctc tcagcacgac cagtcgtccg gcctcgaagc acttaccact aagcagtatg      2220
     caccagcagc agttaccacg gtgagtcaat tatgctctga ttatattata ccacaaaata      2280
     gaacaaatgc attgcatccg aatgcaacgt tcaaagtacc gaagctttct tcgttaattg      2340
     aacacactcc cttcggcgta accgaaccat acaagccccc ccagcctctt cggagcgata      2400
     catcaacgtt tcacccaatg tacaaaagca ccccctatgt ccgccccgtt actgccccct      2460
     ccgtgcactt cgctgatcat ccagttgctt cctcttccgg tttgccaata ttgcccaatg      2520
     tacgaacagt tccgagtaat ccgaccccag tagtgtcttc aatcgccgtc aatagtggtc      2580
     atacgattcc gattccgcct tccgactcaa catctgccct cgtaccagca actgaaccgt      2640
     ggattagtgc tccgacatct caacaactcg ctgccaggca catcgttccc aaggaacttc      2700
     caatcttttc gggcgatcct gtcgagtggc cgttgttcgc aagttgctac cagaacacga      2760
     cgcagttgtg cggtttctcc aatggggaaa atttgatgcg tttgcagcgg agtcttaaag      2820
     gtaacgcact cgaagcagta aggagcttgc ttctggagcc atcgtcggtc ccattgatag      2880
     ttacaactct gcagactctt tatggacggc cggatttaat tatcaactca cttctgcaca      2940
     aggttcgcgc aactccgtct ccgaagccgg acaagttgga aacgttggta tcctttggcc      3000
     ttgcatgcca aaacctttgt ggccatcttc gtgcagcggg tcagcaagct catttctcca      3060
     atccagcttt gcttcaggag ctagtgaaca aactgccagc aaatattaag cttgattggg      3120
     cgctcttcaa gcaaaagtgt gctacagtcg accttggaac cttcggtgat tacatggcac      3180
     aactagtggt agctgcgagc gatgttgctt cctttcaacc ttccgaagaa actcgcttcc      3240
     aatcggataa acgaaagggt aaggagagac tctttgtcaa cgcacattcg tctggcaccc      3300
     cgccggaaaa cgttggaaga cgacaacaag ctggtaccta cgagagcaaa cagaatcagc      3360
     caaagccgtg tcccatttgc gaaaaaccgg gccacaaggt acgagagtgc gacgctttca      3420
     agaagtgcag cttagaagat cgttggaagc gcgttcaaga gctttacctt tgtcggaggt      3480
     gcttgattgc gcatggaaag ttcccttgca aggcgtcgtt atgcggtatg gacggttgtg      3540
     aagaacgaca ccataagctg ttgcatccag ggaagccaga gccagcgaag ccttcgaagc      3600
     caaccaagcc aacagaaacg ctcaatatcc acaatcaacg caagatgaca acgcttttcc      3660
     gtataatacc ggtaacgcta ttcggaaacg gaaggtctgt ccacaccttt gcgtttctgg      3720
     acgaagggtc ttcttccacg ctgattgaag ctcgggttgc ccgcgagttg ggagtcaaag      3780
     gagaggttta tccgctttgc ctgcaatgga caagtgacat agaacggact gaagacaagt      3840
     cacagttgat tcgacttgaa atttctggtc gaggaacgtc caaacgacat gtgttgaagg      3900
     cagcccacac ggtagagaag ttatgcctcc caaatcaaac tctacccttt gatcagctgt      3960
     cggaacagtt tccgtacctc cgtggcctgc ccattgaagg atacagcaac gccacgccaa      4020
     ccgttctcat tggtgtggac aacacgcatc tgaaaattcc tctaaagatc cgggaaggaa      4080
     aaatcggtca accagcggca acgaaaacta gacttgggtg gactatatac ggcgaaatcc      4140
     ctggggaaac ttcttcaata gaacgttttc actaccatct gtttgaggaa cggcgtagtc      4200
     ccgacgacga gccctggtga aggagttttt ttcggtggaa aatgttggag tttctgtcgt      4260
     tcctctcctg gaaagttccg atgaggtgcg atcaagaaaa atcctcgaag aaacgactgt      4320
     tcgcctacct tctggacgat tccagaccgg actgctctgg aaatatgatc acatcgattt      4380
     tccagacagc aaacccatgg cagaaaatcg tctgaggtca ttagaacgac gtttgttgcg      4440
     caaacctgag cttttcgaga atctcaaaca gcagatactc gaatacgagg aaaagggcta      4500
     tgctcataag atcacacaag atgagatcct caactctgat cccaagaggg tatggtactt      4560
     gccattgggg atagttgtgc aacccaagaa acccgggaag gtgcggattg tatgggacgc      4620
     cgcagcggca gtacggggcc agtcacttaa ctctgctctg ttacccggac cggatcttct      4680
     gacctccctt ccgtcggtcc tctcccgata tcgacaacgc caagttgcga tcagtggtga      4740
     tatacgggaa atgtttcacc agctccagat caggcccgaa gataagcagg ctcaacgttt      4800
     cctttttaga agcgatccca ccaaggagcc cgatacgtac gtcatggacg ttgctacatt      4860
     tggtgcaact tgctcaccct cctcagcaca gttcatcaaa aatcagaacg ccagagattt      4920
     cgaggccgag taccccgaag cagctgccgc aatcgtccgc aatcactatg tggacgacta      4980
     tttggatagt ctcgacacca tcgaggaggc aatagatctt gcgctgcaag tcaaaacggt      5040
     gcacgccaag gccgggttcc atatacggaa ctggatgtcc agttccaagg aagtcctctc      5100
     acgggtcggg gattccgcag agaacaacag aaaagcttca aaacccatct gcttcgacct      5160
     cggaacgcgt tcttgggatg agctggtttc ccagttcgga cgaattcgtc ttcaacggat      5220
     attttcgcga cgaaccgacg ccactttttc acggagatga gaaaatcact tcagatctgt      5280
     tcagtgaatg gcgtcggtgg atcaaattgt tgggacaact ggatgcaatt cgcattccga      5340
     ggtgttattt tccgggatac catccggaaa gcttcgaatc tcttgagctg cacatattcg      5400
     tcgatgctag cgaggaggcg tacgtggcgt ctgcgttctt ccgaattgtg gacggatctc      5460
     aagcgcgctg tgctgctggt ttcatcgaag acgaaggtgg ccccactcaa acctctttca      5520
     gttcctcgtc ttgagtcgca ggcggcacta ctgggagtca gattagcaaa gtcggtggcg      5580
     gaaaaccaca ctctagttat cgtccgtcga tttttctgga gtgattcaac cactgttctc      5640
     tcctggctgc agtccgacca acggaaatac cggcagtttg tggcgtgtcg agtgtctgaa      5700
     atcctggaca caacgaaggt ggacgaatgg cactacgtac cctcgcgatt gaacgttgca      5760
     gatgatgcga cgaagtggaa agatgggctc cagatcaaca gcaaccaccg ttggtttcgt      5820
     ggaccgagct tcttatacga ccctccacgc acgtggccca aaccgaagga gcttcctggt      5880
     gcaacggcag aagagcttcg gcccgtccat gttcatcagg aaaaagcgga acagcagtta      5940
     gtacagttct gtcgtttctc caaatgggaa cgttgtctgc gagctgtcgc ctttgttcat      6000
     cggttcatcg accagcttaa acgtaaaagg cgtgacgaaa tcaccaagga tccacgcatt      6060
     cttactcgag aggagctcca gcgagcggaa aacacgatat tgcggcttgc acagttcgaa      6120
     gtttttgcgg acgagatcat cacgatggca aaaaaatcag ttactgccac cggatcaacg      6180
     tcagcgtttg gagaaaacaa gtaaactcta caagctaact ccttttctgg acgaacgagg      6240
     cgtagttcga atggacagca ggatctccag tttctctgaa gcgctctatg attttaaata      6300
     cccagttgtg ctacccaaaa gccactacgt cactcaactg atcgtcgaca gctaccatcg      6360
     gcggtacaac cattgcaatg gagagacagc ggtgaacgaa atgcgacaga gattccattt      6420
     gtcggagatg agagcagctt ttcggaagtc tcggaagatt tgttcttggt gccgggttta      6480
     caaggcaact ccatccgttc caagaacggc accgctaccg gaagcacggg tgactcctta      6540
     tgtcaagccg ttcagtttcg tagggttgga ctacttcggt ccccttctga tcatccaggg      6600
     tcgacacgaa gtgaagcgct gggttgccct cttcacttgt ttaaccatca gggcaatcca      6660
     tctggagcta gtgtccagcc tatctacgga atgctgcaag atggctatac gacgcttcat      6720
     agcacggagg ggggcacctt ccgagatcta tagcgataga gggacaaact ttgtcggagt      6780
     cagcggcgaa ttgcgagagc agataagggg catcaacagt gatctggctt ccacgttcac      6840
     aaataccatc acccaatggc gcttcaaccc accggcttcg ccacatatgg ggggggcttg      6900
     ggaacgtatg gttcgttcgg tgaagtgtgc tttggctgcg ttgtctgccg aacgtaagcc      6960
     aaacgaagaa actttggtga ctcttcttgt tgaagcagag tctgtggtaa attcgaggcc      7020
     gttgacctac atgccgctag agacggcaga gcacgaggcg cttacgccaa actgttttct      7080
     gctgctgagc actagtgggg cgaatcaacc accaagtcag ctttcggatg gtaagttggc      7140
     cttgcgatcc agctgggcgt tgtaccaacg tctactggac caattctggg ttcgctgggt      7200
     gaaagaatac ctgcccacca tcactaagcg aaccaaatgg tttgttgaga gcaaaccagt      7260
     ctcggccggt gacctggtta tgattgtaga agaccgactg cggaatggat ggatcagggg      7320
     acgagttctc gtgtgttccc tggacgagat gggagatgtc gtagcgcaaa tgtccaaact      7380
     gcaaccggcg ttctacgccg tccagtagcc aagttagccg tccttgaagt ggcggatact      7440
     gctcgtgagg acacggacca atacgggtcg gggga                                 7475
//
ID   BEL-630_AA-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-630_AA_;
KW   Pao_Bel_Ele231; BEL-630_AA-I; BEL-630_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-456
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 456 BP; 170 A; 100 C; 82 G; 104 T; 0 other;
     tgttcaggac ggcacccagt cgtccgaatt attagctgcg gggcgagcgc cagcaacggc        60
     tgagtgaccg gccgtccaac gagagaaact gactctgcac accacacata tcacactcag       120
     tattatttga gacagcacag caatcacaca cgctagttgg acgaaaatac gaacgaaaag       180
     tgaattatta attgttagtt tgttggacag gacaggactt agtacacgaa aaggactgaa       240
     aatgtaagac aaacaatcat acaaatatgt aaactaacca acttatgcta cttacaacta       300
     atcatgcaaa attaacttaa aattagtgaa ctaaaccaac caaatgtgaa cttaaatcta       360
     attaatgaaa atgcaatttc agctaaaagc gaactctacc ataaaatccg agttttgcta       420
     aacggattgt ccgaaatccc atcacctgtg tcaaca                                 456
//
ID   BEL-631_AA-I repbase;    DNA;    INV; 6481 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-631_AA_;
KW   BEL-631_AA-LTR; Pao_Bel_Ele198; BEL-631_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6481
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5534-6094] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(38..1177,1181..6481)
FT                 /product="BEL-631_AA-I_1p"
FT                 /translation="MLGRTPIKTRSTTASRDGQPVGGSVRNVDGGNHGNHH
FT                 CKACSGEDNTRMVQCDKCDDWYHFECVEVSQGVAYRDWNCPTCLSASNEVK
FT                 KKDSAKVTSSAVSTSAISNPSIRVTSVPLNLVPQNPTSLTALPNVTTSTHI
FT                 NASALVNVPSSTIFPPMSVIDNSSTLNPPNAYFSSSTCFAPNMLLPPSIFT
FT                 LAGGTISHPHTIPQLNPSVVCAPNMFPEMTDIRQCLPSTSQPRLLPTSVTA
FT                 NVPLASSTIIPTTVPLVGQTSNELLKVPSNKPGKNAKQVFGETSSQHSGTS
FT                 KRSTKHKQLELELKMLDEERKLQEEENRRKREYLQKRYALLLEIASESSSV
FT                 AEIEEDKNEDRVNEWIENGLTAGQVAGDQDPIPEQLRNVNPQPPPPNSMPP
FT                 ICNQFGRPRPARCEAVPLSAPRMFPTLATERYSNIPAHQPQTFLPQHQVVH
FT                 SRTQRPNMSHQLDREPRIANSLGLGRSSLRYDMFEHDEGNNLTRSQVVARQ
FT                 AVSRELPTFSGTPEEWPLFFSSFTTTTAMCGYTAEENLVRLQKCLTGKAFE
FT                 AVKCMLMHPMNVTQIISTLKMRFGNPEIIVHNLMAKISSTPAPKAEKLDTI
FT                 IEFALSVQNLCATIEACQLEEYSYNVALLRELVDKLPTTIKLDWARYRRNF
FT                 AAVNLSVFSSWLYELAEDICPLAGASSDSKLQRSGKNNPAFLNAHAEDVED
FT                 EPKKPPHQSPSGQFKHAEVTCVVCKCDCPTIDKCQRFYELGYNSRWAVVKE
FT                 FGLCRKCLKNHKGSCKVQKLCGKNGCEFKHHQLLHNNQRDLVAAPKTEVKS
FT                 AASPEHREPNATRKFESECNIHHQITNKTLFRVVPVTLYGPDKHIKTFAFL
FT                 DDGSSYTLMDATLATELEVEGKRSPLCLKWTGNMGRSENDSIKLNIQISGT
FT                 GNNVKRYWLHGVHTVSSLDLFRQSVDAQEMANHYKHLRGIPVESYQNAQPR
FT                 ILIGMKNASLSYPLKAREGKLNEPIATKTRLGWVLHGGSDEDDFLLAYHGV
FT                 QVCICTERSDEFLEKAVREYFSLEGLGVTKPDKPLLCKEDQRALNILDGVV
FT                 QTDDGHYETRLLWKYDEFRLPNSKPTALRRFHCLDSRMKKEPELAAALREK
FT                 MKDYEEKGYIRKISEAELQAWMQRIWYIPIFPVFNVNKPGKLRLVWDCAAK
FT                 TGNISLNSMLIKGPDQLTPLNSVLYRFRENKVGITGDIREMFLQVRIAKED
FT                 QGCQLFLWKDNPNDETPSTYVSQVMTFGASCSPTCAQFVKNLNAEKYAGQF
FT                 PRAVEAITKQHYVDDMLVSVESEEEAVQLAKDVRSIHAEAGFEIRNWISNS
FT                 PAVLQALHQEKTADKSLYVGSELGMEKVLGMWWCTNSDCFTFKLSPKHDAM
FT                 LLTGERKPTKREVLRTLMSIFDPLGLLSHVLVGLKILFQEIWRSAIGWDDE
FT                 IPDNLYEKWENWLRILPKLEDVSIPRCYRLLTSMSPNTLVQLHTFVDASEL
FT                 GYAAVVYLRFQQGSTIECAIVGAKSRVAPLKFVSIPRLELQSAVLGSRLAK
FT                 TISEALSFKINERFFWTDARDVLCWLRSDHRQYSPYVAWRISEILDVTNVD
FT                 NWRWISSQDNIADDATKWKRSPDLGCQSRWFKGPEFLWRAADTWPCEPFST
FT                 NTTREELRANLLHHKDEFQPIFQTDKFSEWNRLLHVAATLIRFIANIRQKI
FT                 AGIERNTGPFSKDELVCASNVLYREAQSSSFTEEMDILMNRTSSRAIPKSS
FT                 SLFTLNPFLDGERVMRMHGRISACQYASTDAQNPIILPKDHHITKLIVKSY
FT                 HQRYHHRNHETVLNELRQVFRIPKLRGVFRKVKADCQTCKIQRANPMPPPM
FT                 ADLPNGRLAAYTRPFSYVGVDYFGPMTVAVGRRNEKRWGVLITCLTIRAVH
FT                 LEVAHSLSADSCIMALRTFMARRGVPIQIYSDRGTNFVAANKELSEALREM
FT                 DQQQVIQEITSQHTEWTFIPPASPHMGGAWERLIQTVKANLQKMLPMRRPS
FT                 DEVLRNTLAEIENLINSRPLTYVPVDDPDAPVLTPNHFILGSSSGLKPASR
FT                 MDDRALILRRSWRESQREADLFWQRWLRDYLPELTKRTKWFSDVKAIEVDD
FT                 IVVIVDPDLPRNCWLKGRIIAVKQAKDGHVRSATVQTKMGIYERPATKIAV
FT                 LDVRREELVDQKTGVPGEE"
XX
SQ   Sequence 6481 BP; 1901 A; 1444 C; 1527 G; 1605 T; 4 other;
     atttaaaaaa ttcgtttatc gccatactaa ctgggcaatg ctgggaagaa cgccaatcaa        60
     gacgaggagt actactgcgt cccgcgatgg tcagcccgta ggaggctctg tacgaaacgt       120
     tgatggtgga aaccatggca accaccactg caaagcttgc agcggcgaag acaatactcg       180
     aatggtccag tgcgacaagt gcgatgactg gtaccatttc gagtgtgtgg aagtgagtca       240
     aggtgtcgcc taccgcgatt ggaattgtcc tacgtgccta tctgcctcta acgaagtcaa       300
     gaagaaggat tctgcgaagg taacatcttc agctgtgagt acgtcggcta tcagcaaccc       360
     ttcgatcagg gtaacatcag tacctttgaa tctcgttccc caaaacccaa caagtttaac       420
     cgccttgccc aacgtaacaa ccagtactca tattaatgca tctgcattgg taaatgttcc       480
     gtcgagtaca atatttccgc ctatgtctgt tattgataat agcagtacac tcaatccgcc       540
     aaatgcctat ttttcatcta gcacgtgctt tgcgcctaat atgctattgc caccaagcat       600
     atttacactc gctggtggca caatatccca cccccacaca attccacaat tgaacccgtc       660
     tgttgtgtgt gctccaaata tgtttccaga gatgacagat ataagacaat gtctaccatc       720
     aacatctcaa ccaaggctcc tgccgacatc agtaaccgcc aacgttcccc tggcatccag       780
     caccatcatt ccgaccacgg ttccgttagt tggacaaact tcgaatgagc tgctgaaagt       840
     accgtcaaat aaacctggaa aaaacgcgaa gcaagttttc ggggagacat caagtcagca       900
     ctcaggaacg tcgaagagat ccacgaaaca caaacaattg gagttggagt tgaaaatgct       960
     ggacgaggag agaaaattgc aggaagaaga aaaccggagg aaacgtgaat accttcaaaa      1020
     gcggtacgcc cttttattgg agattgccag tgaatcatcg tcggttgctg aaatcgaaga      1080
     agataaaaac gaggatcgag tgaacgagtg gattgaaaat ggtttgacag ccggacaagt      1140
     agccggggat caggatccga tcccggaaca actgcgtwkg aatgtgaacc cgcagccacc      1200
     acctccmaac agcatgcctc caatttgtaa ccagtttggt aggcccagac ctgctcgatg      1260
     tgaagctgta cccttgagcg ctcctagaat gtttccaaca ttagcgactg aacggtactc      1320
     taatatccca gcccatcaac cacaaacgtt tcttccgcag catcaagtcg tacactctag      1380
     gacgcaacgc ccgaatatga gccatcaact agatagagag ccgagaatcg caaattcatt      1440
     aggactcggt cgttcttcgt taaggtacga tatgtttgaa catgacgagg gtaataattt      1500
     gactcgtagc caagtagtcg ctcgacaagc cgtctcacgt gagctgccaa ctttcagtgg      1560
     cacccctgaa gaatggccac tattcttttc ctcgttcaca actacgactg ccatgtgcgg      1620
     atatacagcg gaggaaaatc ttgtccgttt gcagaaatgc ctcaccggaa aagccttcga      1680
     agcggtaaaa tgtatgttaa tgcacccgat gaacgttact caaattatct caactcttaa      1740
     aatgcgcttc ggaaatcccg agatcatcgt gcacaattta atggccaaaa ttagctccac      1800
     gccggcgcct aaagccgaga aattagatac tataatcgaa ttcgctctct ctgttcaaaa      1860
     tttatgcgcc acaatcgaag cgtgtcaatt agaagagtat tcctataacg tggctcttct      1920
     ccgtgagctg gttgataaat tgccaaccac tatcaagctt gattgggcca gatatcgccg      1980
     taattttgcc gctgtgaatt tgtcagtttt ctcaagttgg ttgtacgagc ttgcagaaga      2040
     catttgtccc cttgcagggg cgtctagtga ttcgaaactt cagcgaagcg gaaagaacaa      2100
     tccggcgttt ctaaatgctc atgccgagga cgttgaggac gaaccaaaga agccgcctca      2160
     tcaatctccg tcaggccagt ttaagcatgc agaagtgacc tgtgtagtat gtaaatgcga      2220
     ctgtcctacc atagacaaat gtcaaaggtt ttacgagctg gggtataatt cacgatgggc      2280
     tgttgttaaa gaatttggac tttgccgaaa gtgccttaag aatcacaagg gctcgtgcaa      2340
     ggtacagaag ctctgcggta aaaacggttg cgaatttaaa caccatcaac ttctacataa      2400
     taatcaacga gatttagtag ctgctccaaa aactgaggtc aaatctgcag catcacccga      2460
     acaccgcgaa cctaatgcaa ctcgtaagtt cgagagtgag tgcaatatcc atcatcagat      2520
     cactaacaaa accctgtttc gagttgtgcc tgtaactctt tatggtccag ataaacacat      2580
     aaaaactttc gcgtttctcg atgatggatc ttcctatact ttgatggatg caactctggc      2640
     tactgaattg gaggtagaag gaaaacgttc accactctgt cttaagtgga caggaaacat      2700
     gggtcgttca gaaaatgact caattaagtt gaacattcag atttctggta ccggaaataa      2760
     cgttaaaagg tactggcttc atggagtaca tactgtctct tctctagatc tattccgcca      2820
     gtctgttgat gcacaagaaa tggcgaacca ttacaaacat ttgcgaggaa ttcctgtaga      2880
     atcatatcag aatgcgcagc ctcgcatact gattggtatg aagaatgcaa gtctgagcta      2940
     ccctttgaaa gcacgagaag ggaaattaaa cgaaccgata gcaacaaaaa ccagactagg      3000
     gtgggttctt cacggtggat ctgatgaaga tgactttttg ttagcctatc atggtgtaca      3060
     agtatgcatt tgtactgaaa ggtctgatga atttctggag aaagcggtac gagaatactt      3120
     ttcactagaa gggcttggtg ttacaaaacc cgataaacca ctattgtgta aggaggatca      3180
     gagagcgcta aacatcttgg atggagttgt ccagacagac gacggacact atgaaacacg      3240
     tctactctgg aaatatgatg aatttcgttt gccgaatagt aaaccgactg ctttacgacg      3300
     attccattgt ttggattcca ggatgaaaaa ggaacctgaa ctagctgctg ctcttcgtga      3360
     aaaaatgaaa gattatgagg aaaagggcta cattaggaag atttcggaag cagaacttca      3420
     agcgtggatg caacgtatct ggtatattcc gatatttccc gtattcaacg ttaacaaacc      3480
     gggaaaatta cgcctcgttt gggattgtgc agcgaaaacc ggaaatattt ctctgaattc      3540
     tatgttgata aagggtcctg atcaattaac tccgttgaat agtgttctgt accggtttcg      3600
     agaaaataag gttggaatca caggcgatat tagagaaatg tttctgcaag tgagaatcgc      3660
     aaaagaagat caaggttgcc agctgttttt atggaaggat aatcccaatg atgaaacacc      3720
     aagcacatac gtgtcacaag tcatgacctt tggggctagc tgctcaccaa cctgtgctca      3780
     atttgtcaaa aacttgaatg cggagaaata tgccggccaa tttcccaggg cagttgaagc      3840
     gatcactaag cagcattatg tggatgacat gttggtcagt gtcgaaagcg aagaggaggc      3900
     tgttcagtta gcgaaagatg ttagatccat tcacgctgaa gctgggtttg aaatacggaa      3960
     ttggatttcg aactcgccag ctgtacttca agctctgcat caagaaaaaa cagcggacaa      4020
     aagcctttat gttggatcag aattgggaat ggaaaaggtc cttgggatgt ggtggtgtac      4080
     gaattcggat tgcttcacat tcaaactctc gccgaaacac gacgcaatgc ttctgacggg      4140
     agaacgaaag ccaactaaaa gggaggtact gcgtacgctc atgtccattt ttgacccgct      4200
     gggcctgcta tcccatgtac tcgtcggtct caaaattttg ttccaggaga tttggcgatc      4260
     tgccataggt tgggacgatg agataccgga caatctatat gagaaatggg agaactggtt      4320
     gcgtattctt cctaaattgg aagacgtctc catccctcgt tgctaccgtt tgctgacgtc      4380
     gatgagtccg aatacgttgg tacagttaca tacctttgtc gacgctagtg agttgggtta      4440
     tgcggctgta gtatatttgc gttttcaaca aggcagtacg atagagtgtg cgatcgtcgg      4500
     ggctaaatca cgtgtagcgc cactcaaatt tgtctccatt cccagactgg agttacagag      4560
     tgctgtcctc ggctcaaggc tcgccaaaac aatttctgaa gccttgtcct ttaagatcaa      4620
     cgaacgattc ttttggactg acgctcgcga cgttctttgc tggttgcgct cagaccatcg      4680
     tcaatattcc ccgtacgtgg cttggcgaat cagcgaaata ctggatgtga caaatgttga      4740
     taactggagg tggatcagtt cgcaggacaa catagcagat gatgcaacta aatggaagcg      4800
     gtcgccagat cttggctgcc agagcaggtg gttcaaagga ccagaattct tgtggcgcgc      4860
     agcagacact tggccatgtg aacctttcag cacgaataca accagagaag aacttcgagc      4920
     aaatttgctc catcacaagg atgaattcca gccgatattc cagacggata aattttcgga      4980
     atggaatcgt ttgctacatg ttgcagcaac attgatcaga ttcatcgcca atatccgaca      5040
     aaaaatagca ggtatcgaac gtaacactgg gcctttctcc aaggacgaac ttgtatgcgc      5100
     atcaaatgtg ctttaccgag aggctcaaag ttcgtcattc acagaagaga tggacattct      5160
     gatgaatagg acgtccagta gggcaattcc gaaatcaagt tccttattca cgttaaaccc      5220
     attcttagat ggagagcgag tgatgagaat gcatggacga atcagcgcat gtcagtatgc      5280
     cagtactgat gcacaaaatc ctataatact tcctaaggac caccacatca caaagcttat      5340
     cgtaaaaagt taccatcagc ggtatcacca ccgcaaccac gagactgtgc tgaacgagtt      5400
     gcggcaagtt tttcgaattc cgaaattacg aggagtgttc cgaaaggtca aggctgattg      5460
     tcaaacatgt aaaattcaac gtgccaatcc catgcctcca cctatggcag accttccgaa      5520
     tggaagattg gccgcgtaca ctaggccttt ctcctacgtc ggcgtagatt attttgggcc      5580
     catgactgtg gcagtaggac ggagaaacga aaagcgatgg ggagtcctta taacatgctt      5640
     aaccatcaga gcggtacatt tagaagtcgc acattccctt agtgcagact cttgcattat      5700
     ggcattacgg acgtttatgg caaggcgggg ggttcctatt caaatttata gcgatagggg      5760
     aacgaatttt gtcgccgcta acaaggagtt gagtgaagca ttgcgagaaa tggatcagca      5820
     gcaagtcatc caagagataa caagtcaaca cactgaatgg accttcattc caccagcatc      5880
     tccacacatg ggtggtgcat gggagaggct catccagaca gtgaaagcaa accttcagaa      5940
     aatgctgcca atgcgacgtc cgagtgatga agttctgcgc aatactttag ccgaaattga      6000
     gaacctcatc aattctcgac cattgactta tgttcctgtg gacgaccctg acgcaccggt      6060
     gttaacaccg aatcatttca tcctaggatc ttccagcggt ctgaagcccg cttctmgaat      6120
     ggatgacaga gcactaattt tgcgaagatc ttggcgagag tcacaaaggg aagcagacct      6180
     attttggcaa cgttggcttc gtgattacct gcctgagctt accaaacgga cgaagtggtt      6240
     ttctgatgtc aaagcaattg aagtggacga tattgtggta atagttgatc cagatcttcc      6300
     aaggaattgt tggctaaaag gcaggataat tgcggtaaag caggcgaagg acggacatgt      6360
     gagatcagct acagtacaaa ctaaaatggg gatctatgag cgacccgcaa ccaagattgc      6420
     tgttctggac gtacgccgcg aagaattagt agaccagaag actggcgtac ctggggagga      6480
     g                                                                      6481
//
ID   BEL-631_AA-LTR repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-631_AA_;
KW   Pao_Bel_Ele198; BEL-631_AA-I; BEL-631_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-681
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 681 BP; 229 A; 114 C; 135 G; 201 T; 2 other;
     tgttgcgacc cctcggtcga cgcggctcag cagaacgatc ttcctcaaca tcatcatatc        60
     gattgaatta gcaacccgac tcagttagaa cgatgacgga tgatgaaaag cgaacgtcaa       120
     aagcgatatg cgaagaatga tgatttgcaa aatagaaaag tcggtagaaa gtgtacattc       180
     tcatgcttaa cgttggatag tcagaaattt tcttataatt attcttaaac tctaaatgtg       240
     gtcctaaaat taattcttgg aaggtaatta tttgctgaac tatatatagg atgtaatttc       300
     ttaaggatta ttattgttgt atagcttaaa acctatgaac tcgcaaagct aacctatcac       360
     agatctcgga tatcttagaa cgaattacca tagtggtccg aagtaacgta agtcttgcta       420
     ttgatatccg acacattaca tttattgaaa cttataawtw attaggtgaa gctggtaaag       480
     ctagagtagt ttgagcggag taggagaaga aagcccatga agaacgctaa acgaactaaa       540
     cgtaagttga gtataaaatt tcattgcgct gaactaatta atggaatttc aggaattttt       600
     taatgctcgc taataaacat taagaaattg gaaattcgtg ctttcttctg ctatccagtt       660
     ccgttggccg gagagccaac a                                                 681
//
ID   BEL-632_AA-I repbase;    DNA;    INV; 6060 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-632_AA_;
KW   BEL-632_AA-LTR; _Pao_Bel_Ele55; BEL-632_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6060
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5106-5657] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(24..2348,2352..6008)
FT                 /product="BEL-632_AA-I_1p"
FT                 /translation="MAYKYPCCDEGEDFDASVRCERCEEWYHFCCVNVDDS
FT                 VAEVVWYCGTCLGEDRDIRTSLGAPGNTAISPVVFNHPRQIEGDRAGIGKS
FT                 TRSKTKGRITRDQAQDEIVEDVEVGNSTQAEDQETIDSERKQEEEEANKDD
FT                 RDAFLHALTEAFGRYCNQVKRSESVPVKKPDRVRESVKKSASLSARVSSPE
FT                 STRTRAWRELQELEEWNRLEEQEEENQRKILELERKRIARKKKVLERRSEL
FT                 RKIIDQGRKVEEFVFNEDEFPEMEAAVEFDEDLELEMFPKDVGPLQRRKNT
FT                 RPPKSQLLDVRLPRPSFEEELGVRHTAFDGECSEERGAIGRSLSRIKMPEP
FT                 GPSRLQIASRQVFPRNLPKFNGAAEEWPIFISAYEQANQSCGFTNAENLVR
FT                 LQEALKGKALETVRNRLLLPENVPLIIEKLKKRFGNPEVLSTRLANRIQQL
FT                 EGPKVESLESVIEFGSAVEEFTQHLKAAGLVNHLKNPILMQSLVQKLPSYY
FT                 AMEWVEYKRRAKAVDLETFGAFMECLVEKALEATFEKSEEIERSKSRDKSR
FT                 TKAFVHATDGGSTQSGQKSVTEKSKSNLPPQSLRRDLKCSVCQEPGHFGRN
FT                 CQELLKQDLEGRWKTVEKLKLCPLCLYDHGQRSCRIRMQCKVEGCQECHNA
FT                 LLHGRRKQAARVQAQCNSHRHETRAVLFRMIPVMLYNGKKKVDTLALIDEG
FT                 SSVTMIDSELAKMLGVDGPIEPLEMTWTNGVQRTEYESKKVVLEISAINSR
FT                 ERYELVKAHTVHRLDLPTQKMDARLVDEFRHLDHIDIPSYGRSVPKIMLGI
FT                 DNLHVIAPLDSRIGECGEPVAVLCKLGWAVYGQQAKVVDRVHFLGHHRCSC
FT                 EECSKTDKGLDELLKQHYQLEEIGVSPVRLESDEDRRAREILEKTTRRVGE
FT                 RFETGLLWKEDDVTFPESFDMALRRMRSLEARMNRNPGVRQILEKQLGDYL
FT                 VKGYAHRITEQELNETPKGKEWYLPLNYVTNPKKPGKVRLVWDAAAKAHGV
FT                 SFNDMLLKGPDMITSLPAVINGFREKRIAFGGDIKEMFHQALVRPEDRQAQ
FT                 RFLFPGADGEVEIYVMDVVIFGSSCSPCSAQFVKNLNAQEHAEQYPEAADA
FT                 IVRKHYVDDYFDSADTEEEAVRKASDVCRVHAKGGFEIRNWVSNSEEVLRQ
FT                 LGGPKCAAKPLEVDKNCPTERVLGVLWDPEGDNFVFSTEIRQDLQAYIREN
FT                 AWPTKRIALRCIASMFDPKQFLAPLLIQGRIIMQDVWRSCIGWDDKLTEEH
FT                 YERWKKWTSLFHLIDEIRVPRCYLGGLESEAYQTVQLHVFTDAGEKAYGCV
FT                 AYFRFENGGVVQCAFIEAKAKVAPLQYLSIPRLELEAAILGARMMKSICEN
FT                 HSFPVLKRFLWCDSDTVVSWVKSDQRRYRPFVAYRIGEIISTTNPEDWRWV
FT                 NSKSNPADDLTKWGKETEIKSSNRWYKGPEFLYQGEENWPKQNRPRVEVAE
FT                 ELRASVLFHYIALPEGLMERMQHISRWSVMVRTIATMFRFVSNCRRRIQKK
FT                 PIEALRKADGGGISSDEVPLRQEEYHAAEVLLWKAVQADEFADEVRTMLKN
FT                 KELPLSEAIPLERSSSLFRLAPFLDEDGVVRMEGRTGAAEYAAFDARFPIV
FT                 LSKDHVVTKRLLEHYHRQFGHSSRETVVNEIRQRFYIPTLRVQVDKVIRGC
FT                 MWCKIQKAKPTVPRMAPLPGQRLAAKVDPFSYVGIDYFGPLDVSIGRRKEK
FT                 RWVALFTCMTVRAVHLEVAYSLTTESCKMAIRRFVKRRGSPTEIFSDNGTN
FT                 FVGANRDLVREINAGCADTFTSSKTRWTFNPPSAPHMGGAWERMVRSVKEA
FT                 LKAFTDGRKLTDEILQTVLVEAEYLVNSRPLTYVSTNVKEDQEALTPNHFL
FT                 RGCSTLECLPSRDPVDLADTLRSSYNRAQFLTDGFWDRWQKEYLPTLNKRT
FT                 KWFVDRRQVAVGDLVFVAEGDKRSSWERGIVKEVFTGKDGRIRSANVQTSR
FT                 GVKTRPVAKLAVLEIDSEE"
XX
SQ   Sequence 6060 BP; 1644 A; 1280 C; 1860 G; 1275 T; 1 other;
     ttcctcaaaa tctatctacc accatggcct acaaataccc gtgctgcgat gaaggggagg        60
     atttcgatgc cagcgttcgt tgtgaaaggt gtgaagaatg gtaccacttt tgctgcgtga       120
     acgtggatga tagtgtcgcc gaagttgtct ggtactgtgg gacctgccta ggagaggatc       180
     gagacatccg tacttcgttg ggtgccccag gcaacaccgc catatctcca gtggtgttca       240
     accatcccag gcagattgag ggtgataggg caggtatcgg taagtcgacg agaagcaaga       300
     ccaaaggtcg catcactagg gaccaagcgc aggatgagat tgtcgaagat gttgaagtag       360
     gcaactcaac tcaagcagaa gatcaggaga caatagattc agaaagaaag caagaagaag       420
     aagaagcaaa taaagatgac cgcgacgcgt ttttgcatgc tttgacggag gcattcggtc       480
     gttattgcaa ccaggtcaag cgttcagagt ctgttcctgt gaagaagccc gatcgtgttc       540
     gtgagagtgt caagaaaagt gccagtttga gtgccagagt gtcgtcgccg gagtcaacgc       600
     gtacccgtgc gtggagagaa cttcaagaac tcgaggagtg gaaccgattg gaagagcaag       660
     aggaagagaa tcagcgtaaa atcctggagc tggagcggaa gagaatagcc cgcaagaaga       720
     aagtgctgga aagaaggtcg gaattacgga aaatcatcga ccagggaagg aaggtggaag       780
     aattcgtgtt caacgaggat gaattcccag aaatggaggc tgcagttgag ttcgacgagg       840
     acctggaact ggaaatgttt ccgaaggatg ttggaccatt acagcgtcgg aagaacacga       900
     gaccaccgaa atcccaactt ctggacgtca gacttccaag gccgtcgttt gaagaagaat       960
     taggtgttcg tcatactgct ttcgacggag agtgtagtga agagcgaggc gctatcggac      1020
     gcagtttgag tcggatcaag atgccagagc caggtccatc gcggcttcaa attgcttcga      1080
     ggcaggtgtt tccaaggaac ctcccaaagt tcaatggcgc tgccgaagaa tggccaatat      1140
     tcatcagcgc ttacgaacaa gcaaatcagt cctgcggttt caccaatgct gagaatttgg      1200
     tccgtctaca ggaagcattg aaagggaaag cattggaaac ggtccgaaat cgactgcttc      1260
     tgccggagaa cgtcccgttg ataatcgaga agctgaagaa gcggttcgga aatccagaag      1320
     tcttgtcgac gaggttagca aatcggattc agcaacttga aggaccgaag gtcgagagtc      1380
     tcgagtcggt gatagagttc gggagtgccg tagaagaatt cacccaacac ctgaaggcgg      1440
     caggacttgt gaaccacctg aaaaacccga ttttgatgca gagtttggtc cagaaactgc      1500
     catcgtatta cgccatggag tgggtggagt ataagcgacg agccaaagcc gttgacctcg      1560
     aaacatttgg cgcgttcatg gagtgtctgg tggaaaaggc attggaggca acctttgaga      1620
     agtcggaaga gatcgagcgt tccaaatcgc gggataagtc gaggacgaaa gccttcgttc      1680
     acgccaccga cggaggaagc actcaatccg gtcaaaagag cgtgacggag aaatcaaagt      1740
     cgaatttgcc gcctcagtct cttcgccggg acttgaaatg ttcggtttgc caagaacccg      1800
     ggcattttgg gagaaactgt caggaattgc tgaaacagga cctggaaggg cggtggaaga      1860
     cggtcgagaa attgaagctg tgtcctctct gtttgtacga ccatggccag cgatcgtgtc      1920
     gtataaggat gcagtgcaaa gtggaaggat gtcaagaatg ccataacgct ctgctacatg      1980
     gacgtcgaaa acaagcagcg agagttcaag cacagtgcaa tagtcatcgc catgaaaccc      2040
     gagcagtgtt gttcaggatg attccggtaa tgctgtacaa tgggaagaag aaggtcgaca      2100
     cgcttgcgtt gatcgatgaa ggatcgtccg ttaccatgat cgacagtgag ttggcgaaaa      2160
     tgctaggtgt tgacgggccg atagaaccgt tggagatgac ttggacgaac ggtgtgcagc      2220
     gtacagaata tgaatccaag aaggtggtgc tggagatatc cgccataaat tcgagggagc      2280
     ggtatgagct ggtgaaagcc cacacggtgc ataggttaga cctccctaca cagaagatgg      2340
     acgcaagama gctagtggat gagttcaggc acctggacca catcgatatt cccagctatg      2400
     gcagaagtgt accgaagatc atgttaggaa tcgacaacct acatgtgatc gctccgctag      2460
     attcgcggat cggagaatgc ggcgaaccag ttgccgtgct ttgcaagctt ggttgggcag      2520
     tgtatggaca gcaagcgaag gtcgtagaca gagtccattt cttgggccat catcgatgct      2580
     cgtgcgaaga gtgtagcaag acagataaag ggttagatga gctgctgaaa caacactacc      2640
     agctggaaga aattggagtt tcccctgttc gcctggagtc ggatgaagat cgcagagcac      2700
     gcgagattct ggagaagact acccggaggg ttggcgaaag gttcgagacc ggactgttat      2760
     ggaaggaaga tgatgttaca tttccggaaa gcttcgacat ggccttgaga aggatgcgga      2820
     gtttggaggc gcgaatgaat cggaatcctg gagttcgtca gattcttgag aagcagttgg      2880
     gagattatct ggtcaagggt tacgcacatc gtatcactga gcaagagttg aacgagacgc      2940
     cgaaaggtaa agagtggtac ttgccgctga attacgtaac gaaccctaaa aagccgggca      3000
     aggtacgatt agtctgggat gcagccgcta aagcgcatgg agtgtcgttc aacgatatgc      3060
     tactgaaagg accggacatg attacttcgt taccagcggt gattaacggc tttcgcgaga      3120
     agaggatagc attcggcggt gacataaagg aaatgtttca ccaagcactg gtgcgaccgg      3180
     aggatcgtca agcacaacga ttcctgttcc ctggtgcgga tggagaagtg gaaatctacg      3240
     tgatggatgt ggtgattttc ggatcgagtt gttcgccttg ctctgcgcaa ttcgtgaaga      3300
     atctgaatgc tcaagaacat gctgaacagt atccagaagc agcggacgcg attgttcgga      3360
     agcactacgt cgacgactat tttgacagcg ccgacaccga agaggaagca gttagaaagg      3420
     ccagtgacgt ctgccgagta catgccaaag gaggtttcga gattcgcaac tgggtcagta      3480
     attcggagga agttctgcgg cagctcggag ggccaaagtg tgcggcgaag ccgctagaag      3540
     tcgacaagaa ctgccccacg gagagagttc tcggagtatt gtgggacccg gaaggagata      3600
     atttcgtgtt ttcaacggag attcgacaag accttcaggc ctacatccga gaaaacgcct      3660
     ggcctacgaa aaggattgca ttgaggtgta ttgcaagcat gtttgacccg aaacaatttc      3720
     tcgctcccct gttgatacag ggaaggatca tcatgcagga cgtgtggcgt agctgcatcg      3780
     gctgggacga taagctcacc gaagagcatt atgagagatg gaagaagtgg acaagcctgt      3840
     tccacctgat tgacgaaatt cgagttccac gatgttatct cggtggacta gagtcggagg      3900
     cgtaccagac agtgcagcta cacgtgttta ccgacgccgg agaaaaggcc tatgggtgcg      3960
     ttgcctactt caggttcgag aacggcggag tcgttcagtg cgcattcatc gaggcgaagg      4020
     cgaaggtggc tccacttcag tacttgtcta tcccgaggtt ggagttggag gccgctattc      4080
     ttggtgctcg gatgatgaag tcgatttgcg aaaatcattc ctttcccgtg ttgaagaggt      4140
     tcctgtggtg tgattcagat acagtggtgt catgggtgaa gtccgatcaa cgaagataca      4200
     gaccgttcgt cgcttatcga atcggagaga tcatcagcac cacgaatcca gaagattggc      4260
     gttgggtcaa ctcgaagagc aatccagcgg acgatctgac gaagtgggga aaggaaacgg      4320
     aaataaagtc gagcaaccga tggtacaaag gaccggaatt cctgtatcaa ggagaggaaa      4380
     attggccgaa acagaaccgt ccgagagtag aggtcgccga ggaacttcga gcaagtgtgc      4440
     tgttccatta cattgcgttg cccgaaggtt tgatggagag gatgcaacac atctcaagat      4500
     ggtcggtgat ggtccggacg atagcaacga tgttccgctt cgtatccaac tgtcgtcgtc      4560
     gtattcagaa gaagccgatt gaagcattgc ggaaagccga tggtggaggt atctcgagcg      4620
     atgaagtacc gttgcggcag gaagaatacc atgcggcgga ggtcctcttg tggaaggcgg      4680
     tgcaagcaga cgagttcgcc gatgaagtga ggacaatgct gaagaacaaa gagttgccgt      4740
     tatcggaagc gatacctctc gaacggtcaa gttcgttgtt tcgcctggca ccgtttctgg      4800
     atgaagacgg agtcgttcgg atggaaggtc gaaccggagc agcggagtat gcagcgttcg      4860
     atgcaagatt cccgatcgtt ttgtcgaagg accacgtggt gacgaagaga ctgttggagc      4920
     attaccaccg gcagtttggc catagcagca gagaaaccgt ggtgaatgaa atccggcagc      4980
     ggttttacat cccgacgtta agagtgcagg tcgacaaggt gatacgtgga tgcatgtggt      5040
     gcaagattca gaaggcgaag ccaactgtgc cgagaatggc accattacca ggacagcgtt      5100
     tagcggcgaa ggtcgatccg ttctcctacg tcggtatcga ctacttcggc ccactagatg      5160
     tgtccattgg acgaaggaag gagaaaagat gggtggcact cttcacttgc atgacagtgc      5220
     gggcagtgca tctggaggtg gcgtatagcc tgacgacgga gtcgtgcaaa atggcgatca      5280
     ggaggttcgt gaagcgacgt ggcagtccaa ccgagatttt ttcggataac ggcactaact      5340
     tcgtgggtgc aaaccgagac ctagttcgag agataaacgc gggatgtgca gataccttca      5400
     ccagttcgaa gacccgttgg acgtttaacc caccgtcagc accacatatg ggtggtgcgt      5460
     gggagagaat ggtgcgctcg gtgaaagagg cgttgaaggc gttcaccgac ggacggaagc      5520
     tgacggatga aatcctgcag acggtgttgg tagaagcaga atacctggtg aactcgcgcc      5580
     cattgacgta cgtgtccacc aacgtgaaag aggaccagga agcgctaact ccgaaccact      5640
     ttctgcgtgg ctgttcgact ttggagtgtc tgccgtcaag agatcccgta gatttggccg      5700
     atacattgcg gagcagttac aatcgagcac agtttctgac ggatggtttc tgggaccgtt      5760
     ggcaaaagga gtacttgccg acgctgaaca agaggacgaa atggttcgtc gaccgacgac      5820
     aagtggcggt cggagacttg gtgtttgttg ctgaaggtga caagcgaagt agttgggagc      5880
     gaggcattgt gaaggaagtg ttcaccggaa aggacgggcg gattcgttcg gcgaacgtgc      5940
     agacgagcag aggtgtgaaa actaggccgg tagcaaagct tgccgttctg gagatcgact      6000
     cggaggagta atccctgttc cgcacccgag aagcagccac agggtttacg ggtgggggga      6060
//
ID   BEL-632_AA-LTR repbase;    DNA;    INV; 580 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-632_AA_;
KW   BEL-632_AA-I; Pao_Bel_Ele55; BEL-632_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-580
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 580 BP; 154 A; 94 C; 149 G; 183 T; 0 other;
     tgttgcggcc cactgttcac aattgcaacg ccgcggccca ctgttgcgaa agagcacaac        60
     cgtgaacgtg ttctgttttg ttgttgttgt gcagcataaa tgttgattaa cggagagtgc       120
     aaaaggaggg agaaaacagc catcgcagct gatcggtgat caattagaaa ggcaactgcg       180
     gtggaagatg gtgttttctc catcaagaat tagtgtttgc cagtgaagtt tcctgtaatt       240
     tgtttgttct attgtgatcg tttaacatag aatatcgtcg agctgtagcc aagtagtgac       300
     gttagttatt cgtcaccgtt gtttaccgta agattacgtt tgttcaatgt gtgtcgtatg       360
     tgctaatgtt gattattgta aataggatta ccctgcacac ccggaggtag agtaagagga       420
     gcaattgtgg ccgaagggaa aaaactagat tgtaagtcgt ttgtatttaa ttgtttgtaa       480
     taaggtttaa cgtaaatgtt gtaaatatat ttctagttga gtttgttgcg agccgacata       540
     ctgtgagatc gtttttaccc gcatccgaag ggtgcgaaca                             580
//
ID   BEL-633_AA-I repbase;    DNA;    INV; 5503 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-633_AA_;
KW   BEL-633_AA-LTR; Pao_Bel_Ele82; BEL-633_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5503
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4517-5101] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3923..5470
FT                 /product="BEL-633_AA-I_3p"
FT                 /translation="MVTAINDMSVLTKFSSFRKLQRVVSYVIRFINKARNR
FT                 RTAGDSLKFATVTEMRLALTAIIRMVQQQQLFVEIQQIKKLQTNHDGERYV
FT                 GRLRTLNPWIDDDGILRVNGRIKYANVNYEQKHPPILPAEHPVTKLLIQAI
FT                 HNENLHVGPSGTLSIIRQRFWIINGRNAIRQQLRKCIICFKVNPTDTKIYM
FT                 GNLPSYRVTQANPFQRTGIDFAGPIYVRKGHPRKPVYEKGYVALFVCMATK
FT                 CIHIEFVSNLATSSFIAALHRFVSRRGLPSDIYSDNATNFAGASSELHELY
FT                 VLLRQQQTVEALEEFKMPREINWHFIPPRSPHVGGLWEAGVKSAKYFLKRT
FT                 AGEAKLTEEEWHTLLVQVEGLLNSRPLIAQSSDPSDYNVITPGHLLIGRAI
FT                 NAIPEPSYDQLKAGTLSRWQHIQKMRSDFWKRWSVDYLAELQQRHKWNKNH
FT                 TEVKVGDLVLLREDHVPPAQWKLGRVVDVHPGKDNVTRVVSVKTTSGVYKR
FT                 STAKVAVLPLDVPEDKAITN"
FT   CDS           join(77..2278,2282..3865)
FT                 /product="BEL-633_AA-I_1p"
FT                 /translation="MTSTPTNESDFAKDVFSTPIGNQKRSHAEKQRLKKMA
FT                 EEVQAVIYQRGAVKGKLTRIRNALQRVVQEQVAPDEFLLRTHLKTIDAAYE
FT                 EFNVFQNKLYALAPASAEEQEAKYIEFEDLYNEVRALVCRLLERVKQEANR
FT                 PAANQDVDPVHVPVQQIHPVRASPLLNTPLPTFDGKAENWFRFKAIFTDVI
FT                 NRYPGESDATKLYHLDKCLIGDAAGVIDQQTINDSNFDAAWEYLTERYEDV
FT                 RKIVDIHANGLLHLKAMTAESGKQLRTLMDDCKRHVEALKFHEYEVSGLSD
FT                 VLLVNILASKIDLETRKLWEGSITHGEVPTYEETTAFLVKRCQILERIEEN
FT                 SAATKQKKPVSTTAAKVPPMKVTTLAASAELRCNFCEESHNNHQCKEFLKL
FT                 NPSERFEKAKQAKVCYNCLRKGHTTARCSSAMSCKICKKRHHTTLHANVVT
FT                 TTGTVNAQTSTTPQNAPEINASEPASNVNTTVASTHTISASCVSYQQRALL
FT                 CTAIVNVISGDGVTQPCRVLLDCGSQVNLITEKLAGLLQVERKPANVQVIG
FT                 VDGATTRVTAAASVHVQAISNGFTSKIECLVMKRITGPIPSSFVDVASWPL
FT                 PPGLQLADAAFNRPQRVDMLIGVGHFFDLLKSGKIKLAENLPFLQETVFGW
FT                 VIGGIIDSSSSNYKMVRCNVAVPEENLEKLVEKFWESEEVATSTRMSPEEV
FT                 ACEQYYKQTTTRDSEGRYVVKLPFRTNVDQLGESQHALQRFDYLERKLSKN
FT                 AELKKAYCDFMAEYIRLGHCRILREEEDASIGYFLPHHAILKPSSSTTKLR
FT                 TVFDASAKTSSGLSLNDTLMVGPTIQDSLVNICMRFRIHPIVFTSDISKMY
FT                 RMVSVSPDQTKFQRVFWRTDPSVPLKILELSTVTYGTASAPYLATRTLHQL
FT                 AQDEGHNFPKAAKILVKDFYIDDVLSGANSPQEAVEIHDELVALLHKGGFE
FT                 LHKWCTNSPELLASIPEELREKQVAFEQHDVNNVIRTLGLLWDPSNDQLRF
FT                 RVAPPDHAQQVTKRFILSEIAKIYDPMGLLSPVVVVAKLLMRQLWRSKLSW
FT                 DEDVPATLSEPWRRFRDGLESLKNLKIERLIISPRRIAVELHAFSDASMEA
FT                 FGTCVYLRSILEDNTVEVRLLASKSRVASKATIPRLELCGFQLMARLVNQV
FT                 EAALQIDFDRKVMWSDSQIVLCWLRKAPHQLSVYVGNRVAEVQERTSSFEY
FT                 LFVRSEDNPADLVSRGLEAEDLARSEIWWNGPDYLRLNAFEEQTLEHGVLH
FT                 C"
XX
SQ   Sequence 5503 BP; 1536 A; 1281 C; 1358 G; 1325 T; 3 other;
     ttttggtcct acagcgccgg attttcgtaa aagtttcggt cgattttgca agtttcgcgg        60
     acggattttt acgtacatga cttctacgcc cacgaatgag tcggatttcg cgaaagacgt       120
     ttttagcact ccgattggaa atcagaagcg ttcgcatgcg gaaaagcagc gcttgaagaa       180
     aatggcggag gaggttcaag ctgtcattta tcagcgagga gctgtaaaag gcaagctcac       240
     gcgaatcagg aacgccctac agcgagtcgt gcaggaacaa gttgctcccg acgaatttct       300
     gcttcgaacg cacctgaaaa cgatcgacgc tgcatacgag gagttcaatg tcttccaaaa       360
     caagctgtat gccctggcac cggcgagtgc agaagaacag gaggcgaagt acattgaatt       420
     cgaggattta tacaacgaag tgcgagcatt agtgtgtcga ttattggaac gagtgaagca       480
     agaagcaaac cgtcccgccg ctaatcagga tgttgatccg gtacatgttc ctgtccagca       540
     aatacatccc gtgcgagcat cgcctctgct gaataccccg ttgcctacct ttgatggcaa       600
     agccgaaaac tggttcaggt ttaaggcaat cttcaccgac gttatcaaca gataccckgg       660
     agagtcggac gcaacaaaac tttaccacct tgacaagtgt ctgatcggcg atgctgctgg       720
     cgtgatcgac cagcagacga tcaacgatag taacttcgat gcagcttggg aatacctcac       780
     ggagcgttac gaggatgtgc gaaagattgt cgacatacac gctaacggat tgctccacct       840
     gaaggcgatg acggccgaaa gcggcaagca gctacgaact ttgatggacg attgcaaacg       900
     tcacgtcgaa gcgctcaaat tccacgaata cgaggtaagc ggactttcag atgttttgct       960
     ggtcaacatt ttggcatcga aaatcgattt ggagacccga aaactttggg aaggcagtat      1020
     tacgcacgga gaagtaccta catacgaaga aacgactgcc ttcctcgtta agcgatgtca      1080
     aatcttggag cgaattgaag agaactcagc ggcaacaaaa cagaagaagc ccgtttccac      1140
     tacggcagca aaagttccac caatgaaggt aacaactctc gcagcgtctg cagagcttcg      1200
     gtgcaatttt tgtgaagagt cccataacaa tcaccagtgc aaggaattct tgaagctgaa      1260
     tccgagcgaa cgatttgaga aggcgaaaca agcaaaggtc tgctacaatt gtttaaggaa      1320
     aggacatacg acggcscggt gctcttctgc gatgtcttgc aagatctgca aaaagcggca      1380
     ccacactacc cttcatgcaa atgtggttac tactactggt actgtgaatg cgcagacgtc      1440
     tacaacaccg caaaatgctc cagaaatcaa cgcaagtgaa ccggcttcga atgtaaacac      1500
     aactgtagct tcaacgcaca cgattagtgc atcttgtgtt agctaccaac aacgagcact      1560
     actatgtacg gctattgtga acgttattag cggagatgga gttacccaac cgtgccgtgt      1620
     cttgttggat tgcggctcgc aggtcaatct gatcaccgaa aagttagccg gcctactcca      1680
     agttgaacgg aaaccagcga atgtgcaagt cattggagtt gatggtgcta ctacgagagt      1740
     aacagcggcg gcgtccgtcc atgttcaagc tattagcaac ggattcacga gcaagataga      1800
     gtgtttggtg atgaagagaa ttacaggccc catcccatca agtttcgtcg atgttgccag      1860
     ctggccgttg ccaccaggtc tgcaattggc cgatgctgca ttcaaccgac ctcagcgggt      1920
     cgatatgctt attggtgttg gtcatttctt tgatctcctc aagtccggca agattaagct      1980
     tgcagaaaat ttgccgttcc tgcaggagac agtgtttgga tgggtgattg gcggtatcat      2040
     cgattcctcg tcctcgaatt acaagatggt tcgctgcaat gtggcggttc cagaagaaaa      2100
     tttggagaag ttggtcgaaa aattctggga atccgaagaa gtcgctacgt ctacacgaat      2160
     gtcaccagaa gaggtggcat gtgagcaata ctacaagcaa actaccacga gggattctga      2220
     aggacgttac gtcgtaaagc taccatttcg aaccaacgtc gatcagcttg gagaatctag      2280
     kcagcatgcc ttgcagcgat tcgattactt ggagcgaaag ttaagtaaaa atgcggaact      2340
     caagaaagca tattgtgact tcatggcaga atacattcgt ctcggccact gtcggatttt      2400
     gagagaagaa gaagatgcct caattggtta ctttttgccg catcacgcta tattgaagcc      2460
     ttcgtcgtct accacgaaat tacgcaccgt ttttgatgca tcagcgaaga cttcatctgg      2520
     actctcttta aacgacacgc ttatggttgg tccgaccata caagattctt tggtcaacat      2580
     atgcatgcga ttccgtatcc atcccattgt gttcaccagc gatatttcga aaatgtacag      2640
     gatggtctcc gtttctccgg atcaaacgaa attccagcga gtgttttgga gaacagaccc      2700
     ttcagttcct ttgaagatcc tcgaactctc gacggtcacg tatggtacgg catctgcgcc      2760
     gtacctcgct acacgtactc tgcaccagtt ggctcaagat gaaggtcata atttcccaaa      2820
     agctgcgaag atattggtga aggactttta tatcgacgat gttctgtctg gagccaacag      2880
     tccacaggag gctgttgaaa tacacgatga gctggtggca ctattgcata aagggggctt      2940
     cgagctccac aaatggtgca caaactctcc agagctatta gcgtctatcc cggaagagtt      3000
     acgtgaaaaa caggtagcat tcgaacaaca cgacgtcaac aatgttatcc gcacgcttgg      3060
     attgctctgg gacccatcca atgatcagct gagattccgt gtcgctccac ctgatcatgc      3120
     tcagcaggtt acaaagcgct tcatactgtc ggagatagca aagatttacg atccgatggg      3180
     cctgctatca ccagtggttg tggttgccaa gctgttgatg cgtcagctgt ggagatccaa      3240
     gctttcctgg gacgaagacg tacctgcaac actgtcagag ccatggcgac ggttccgaga      3300
     tggactcgaa tcgttgaaga atctgaaaat cgaacgcttg attatttcac caagaagaat      3360
     tgcagtagaa ctacatgcct tctcggatgc atctatggaa gctttcggaa catgtgtgta      3420
     tctccgaagc atcctcgaag ataacacagt ggaggttcga ctactggcca gcaaatctcg      3480
     cgttgcttcc aaagctacaa ttccaaggtt ggagttatgt ggtttccagc tcatggcacg      3540
     actggtcaat caagttgaag cagcgctaca aatagatttc gatcgcaagg ttatgtggtc      3600
     agactcgcag atagttttgt gctggttacg aaaggctcca catcaactca gcgtctacgt      3660
     cggaaataga gtcgccgaag ttcaagagcg tacgtcgtct ttcgagtacc ttttcgtcag      3720
     atcggaagat aatccagcgg acctcgtgtc ccgcgggctc gaagcagagg acttagctcg      3780
     aagtgaaata tggtggaacg gtccggatta cttgcggctg aatgctttcg aagaacaaac      3840
     actggagcac ggtgtactac attgttaatt tttatgccgt gcactggagg aagttgacaa      3900
     tctacctgaa gttcgagtgg caatggttac tgcgatcaac gatatgtcgg tcctcaccaa      3960
     gtttagttcc tttaggaaac tccaacgagt tgtatcgtat gtcatccgtt ttatcaacaa      4020
     ggcaagaaat cgtcgaacgg ctggtgacag tttgaaattc gctactgtta ctgaaatgag      4080
     attggcttta accgcaataa tcaggatggt ccagcagcag caactatttg tggaaataca      4140
     acaaatcaag aaactccaga ccaaccatga tggtgagcga tacgttggca gactgcgaac      4200
     attgaatccc tggatcgacg acgacggaat tctacgtgtt aacggaagga tcaagtacgc      4260
     aaatgtgaac tacgaacaga aacacccacc gatacttcca gctgagcatc cagtgacgaa      4320
     attgttgatt caagccatcc acaacgaaaa cctacacgtg ggccccagcg gtactctttc      4380
     gattatcaga cagcggtttt ggatcatcaa cggtcggaat gccatccgac agcaacttcg      4440
     aaagtgtatt atttgcttca aggtcaatcc aacagatact aagatctaca tgggaaactt      4500
     gccaagttac agagtgactc aagctaaccc attccagcgt acgggaattg attttgccgg      4560
     acccatctac gttcggaaag gtcatcctcg caagccagta tacgagaaag ggtatgtagc      4620
     attattcgta tgtatggcga caaaatgcat ccacatcgag ttcgtgtcga acctggctac      4680
     aagtagcttc atagcagccc tacatcgttt cgttagtcgt cgcggcctgc cgtccgacat      4740
     ttatagtgac aacgccacga actttgcagg tgcgagttca gaactgcatg aactttacgt      4800
     tctacttcgt caacaacaga cggttgaagc acttgaggag ttcaaaatgc cccgtgagat      4860
     aaactggcat tttattcctc ctcgatcacc ccatgtaggg ggattatggg aggctggggt      4920
     taagtcggct aaatacttcc tgaagcgcac tgccggcgaa gcaaagctta ctgaagagga      4980
     atggcacact ttgctggttc aagtcgaagg gttgctgaat tcacgtcctt tgatagcaca      5040
     gtcttccgat ccaagcgatt acaacgtgat cacaccaggc cacctattga tcggtcgtgc      5100
     tattaacgcg attcctgaac caagctatga tcagctcaag gctggtacac tttcaaggtg      5160
     gcagcacatt cagaaaatga gatctgattt ctggaagcgc tggtcagttg actacttggc      5220
     tgaacttcaa caacgtcaca aatggaacaa aaaccacact gaagtcaagg tcggtgatct      5280
     agtgttactg cgcgaagacc atgttccacc ggctcaatgg aaacttgggc gagttgtaga      5340
     tgtccaccca ggcaaagaca acgtgacaag ggtggtgtcg gtaaaaacca catcaggtgt      5400
     gtataagcga tcaacagcta aagttgcggt acttccgctg gacgttcctg aggataaggc      5460
     gataactaat tgaacttccc agaacttcaa tggcgggggt gga                        5503
//
ID   BEL-633_AA-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-633_AA_;
KW   Pao_Bel_Ele82; BEL-633_AA-I; BEL-633_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-179
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 179 BP; 55 A; 35 C; 35 G; 54 T; 0 other;
     tgttccgtcg agctggcaac acgtcgcagc agactgtgac acacgagatg aaaaacgcta        60
     tggttgaatt ttgttctttt atttttgttt tttgattcaa gttcctacaa atacacaagc       120
     aaaagagaat aaagtgaaag tatgtacagt ccacacgcgt tttactatta gtcccgaca        179
//
ID   BEL-634_AA-I repbase;    DNA;    INV; 6791 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-634_AA_;
KW   BEL-634_AA-LTR; Pao_Bel_Ele201; BEL-634_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6791
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5828-6385] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..1250
FT                 /product="BEL-634_AA-I_3p"
FT                 /translation="MDPSESHCMLCDRPNHVDNLVQCDRCDGYLHYSCAEV
FT                 GDSIADPDRSFTCKRCIESDEVVTVSSHSSRRTSNSSRSAARAALRLQQLE
FT                 KERQIRLRELEDAEKFQRMRRQVELEFEKEQFAILEQQLQEENEDGSTSTS
FT                 RVSSRRIRDNTRKWVRAASQTGGVKCPIATTSTQIGSTIPTGTSQNPAIAP
FT                 EGSTEATLAVPFSSGITSRVPAPVVAMRVIGNSGEQHSNHPTEVRTTTTTN
FT                 SDQGMITRAEIVPPANLQIDQQLPGRMQQIAGAARTTTDCNMSSGTGGERV
FT                 GAPISVGLSTDQVRTSISTLHVRLQPIDEAAQTSTPKQAPVVQTSVGNQSG
FT                 PREKPNYLAKSGNAIGAVQGQLPHSTLLNILHPQGNLLRVQRGLVYYHPLN
FT                 QPC"
FT   CDS           join(3401..4117,4121..5383)
FT                 /product="BEL-634_AA-I_1p"
FT                 /translation="MSNLFRQFLAVDEASVKRSPQSKEDQRALDILHNTTR
FT                 RVDGRWETGLLWRSDEPSLPNNYNMAVRRMEALERKLAKDEELQKKVQGMI
FT                 EEYLAKGYAHRITAAELESSMPGRVWYLPLGVVRNPRKPEKVRLIWDAAAR
FT                 TEGVSFNDMMLKGPDMLTALPVVLLRFRQNRIAFSGDIKEMFHQFRIRQED
FT                 RQAQRFLYREHPGAQAQIFVMDVATFGAACSPCIAQYLKNKNAEEYKEQPE
FT                 AARAIVDKHYVDGYLDSVETLEEAAKLIEDVKHVHAMAGMEIRNFASNSTE
FT                 LLQRIGEVRETQQKSMSLEASAERVLGMMWKPLEDIFTFQLDLKEEVRNIV
FT                 TNKIVPTKRQVLRTIMSVFDPLGLVAHFVVHGKLIMQRIWRAGLNWDEQID
FT                 GEILEDWRKWSGLLTTITEVSVPRCLLPGSGDTSQEPQLHVLVDASENAYA
FT                 CVAYLRTSCNGLPRCTLIAAKTKVAPLKPLSIPRLELQAALIGSRLVDTIT
FT                 KALTIPISARYLWTDSSTVLAWLRSETRQYHQFVGFRVGEILSTTTVNEWR
FT                 KVPSKLNVADQATKWKDGPSFDPKDWWYAGPSFLSDPEEKWVEDSAEKFTT
FT                 TVDMRASFLLHRNQGQASMVAVERFSKWVRLLRTHRLRRSGGQAIPRTESD
FT                 RPADAGRDTDS"
XX
SQ   Sequence 6791 BP; 1868 A; 1686 C; 1822 G; 1409 T; 6 other;
     aaaatcttca aagattttga cgtggattcc atgcgcacgt ggttaacatc cggacaggaa        60
     tggatccgtc agaaagccat tgtatgctct gcgatcggcc gaaccacgtc gacaatttag       120
     ttcagtgcga ccgatgtgac gggtatttgc actattcttg tgccgaagtg ggggactcga       180
     tagccgatcc cgatcggagt ttcacctgca agaggtgcat cgagagcgac gaagtcgtca       240
     cggtatcctc ccatagctcc cgcaggactt caaacagcag ccgcagtgcg gcccgagcag       300
     cactacgtct ccagcagctg gagaaagaga gacagatccg cctcagagag cttgaggacg       360
     cggaaaagtt tcagcgaatg cgccgccagg tcgaacttga gttcgagaag gaacagtttg       420
     ccatcctgga gcaacaactc caagaagaga acgaagatgg tagcaccagt acgagcagag       480
     taagctctag aaggatccgc gacaacacca ggaagtgggt cagagcagcg agtcagaccg       540
     gtggagtgaa atgtccaata gctaccacat cgactcaaat tggttccaca attcccactg       600
     ggacctcgca gaatccagct atcgctcccg aaggtagcac tgaagctacc ctagcagttc       660
     cgttttccag tggcataacc agtcgagtgc cggcacctgt cgtggcgatg agggtcatcg       720
     gcaattctgg ggaacagcat tccaaccatc ctacggaagt tcgtaccacc acgacaacca       780
     acagcgacca aggaatgatc acgcgagctg aaatcgttcc tccggcaaat ctgcagattg       840
     accaacaact tccgggcaga atgcagcaga tagcaggagc agctcggacg acgaccgatt       900
     gcaacatgtc atcgggcacc ggcggtgagc gagtaggagc accaataagc gtaggtttgt       960
     ctacagacca ggtgagaact agcattagca ctttacacgt cagattacag ccgatagacg      1020
     aggctgctca aactagtacg ccgaaacagg cacctgtagt acaaacaagc gtaggaaatc      1080
     agtcagggcc tagagaaaaa ccaaattatc tagccaaatc aggcaatgcg ataggagcag      1140
     ttcagggtca gctaccacac tctactctct tgaacatctt gcaccctcag gggaacctcc      1200
     tccgggtcca aaggggattg gtctactacc accccttaaa tcaaccttgt tawctaatcc      1260
     gaatccatcg attagtcaac aaccgaacag tcaaacgatc ggtcgaaaaa cgtcggtagt      1320
     ttcgtcttta ttggaacgtg gacagtgcgg tcaatcaaat ccatcacttg ttttgccagc      1380
     gtcggggcat cagcagttca gtgtgtcgaa tccccaagaa tctcaaccac cgttgggacg      1440
     agaacagtgc atggtgttta gtgaacgaaa ccaatcagtg atccagcccc caccgggata      1500
     cgaaaatttc gtgaggaatt ccgagacagc accagccggt tcctggaaca cgtcgtatcc      1560
     aacgctcgcg aatcctggtt cagcaagcct tttccggaca tcaggttcgt atcagcagac      1620
     acgccgcctc ccagaccatg cgttgaattc gacggaatat ccaccggcgt tgggtcatca      1680
     gcaatgccaa ttaccgagct cgacgatact gggagcccaa ccaggatgtc aagcatttcc      1740
     ggcacctgga ccggatcaat cgggaccacc aatcgggacg aaatcatcag tatgtgccag      1800
     atcagtcagc tcgcgtgcag tggaaccatg ccagtgattc tcaaccgcga cgtgggacaa      1860
     ggcccacagc cgaacaaatg gctgctcgac aagtcatcgg aaaggaactg ccaatctttg      1920
     cgggagatcc aagagattgg ccactcttcc ttagttcctt caacaactcg accgaaacct      1980
     gtgggtacaa cgatgccgaa aaccttgcgc gtttgcagcg gtgcttacgt ggacatgcac      2040
     tggagagcgt aaaaagtcgg ctgctgattc cggagtcagt tcctgttgta ttggagacac      2100
     tggagcgact atatggaaga ccagaggtgg ttatccatgc tcttttgaag cagatgagag      2160
     agatttcctc ccctcggggc gacgacctca aaacattgat ccagtttgga atgggcgtag      2220
     gaaacatggt ggagcacatg atcctggcgc aacaatatca gcatattagc aatcctatgc      2280
     tactgcagga attggtggat aggcttccac cgaatctaaa actccagtgg gcctgcttca      2340
     agcgcaacta caacccagtc aacctggcca cgttcaacga ttttatgaaa gaccttgttg      2400
     cgatggccag tgacgtcact ctttttsctg atttgggact gcaaacggtc aagaaacaag      2460
     aaaaaggaaa gcgagagaaa cccacgaagg agaagctttt gttcatcaac tgtcatcaac      2520
     ggcggctggg acgtctaccc ctgagagtct accggcaaag ccctgtatcc attgcggtca      2580
     aacgggccat cgaatcgccg actgtatggc attccggcga ttgaatgtgg acgagcgatg      2640
     gaaggtgcta cgacagaaag gattgtgcag gatatgctta atacctcatc gatcttggcc      2700
     ctgccggtca aaactggaat gcggagtagg agactgtcga atgcgtcatc atggtttgct      2760
     acacgttagg aaggaggagt caggagtacc atcgtcatct acgctggaga agaacgttgt      2820
     tcagcaacat ctcattcagc aacttctagt gcactgttgc gctatcttcc tgtgacgttg      2880
     cacttcaatg gaaaaagcgt ggatgttttc gcatttctag acgacggatc ttcctcgacc      2940
     atggtggaag cagaagtagc ggatcagctg ggcgctgtag gacctggcga accgctccat      3000
     ctcggttgga cgggagatat tacaaggacc gagaaagaat cccagcacat ccaaatcgtc      3060
     atctccggac tcaacatgga aaatgaattt ccattgaagg ctagaactgt gagcagcttg      3120
     aagttaccga gtcaaacggt ggattacgac gcgctctgtt cagaccatcc tatttgagga      3180
     agctgccact gtgtagctac acaatgcctc acctcgtctc atcatcgggg ttgataacgc      3240
     gaagctgata agtgcactga aaagccggga aagcaacaca ggagaactag tggcggttaa      3300
     gactcggcta ggatggtgtc ttttcggaaa aagctctagc gggagcagtc ctggagaata      3360
     cgtgaacatt catgctgagc tgcccgagga agacgccgag atgagcaatc tgttcaggca      3420
     gtttcttgca gtcgatgaag cgagcgtcaa gcgaagtcca caatcgaagg aagatcaacg      3480
     agcgctggac atcctacaca acaccaccag aagagttgat ggtagatggg aaactgggtt      3540
     gctgtggcga agtgatgaac cgtcgctccc aaataactac aatatggccg tgcgaagaat      3600
     ggaagcattg gagcgcaagc tagcgaagga tgaggaactg cagaagaaag ttcaggggat      3660
     gattgaggag taccttgcta aaggatatgc ccatcgaata actgctgcgg agttggagtc      3720
     ttctatgcct ggtcgggtat ggtatttgcc acttggggtg gtaaggaacc cacgaaagcc      3780
     agaaaaggtg cgtctgatat gggacgccgc agcccgaaca gaaggagttt cattcaacga      3840
     catgatgttg aaaggaccgg acatgttaac agcacttccg gtcgtccttc tgcgcttccg      3900
     ccagaatcgc attgccttta gtggagacat aaaagaaatg ttccaccaat ttcgcatacg      3960
     acaagaggac aggcaggcgc aaagattcct ttaccgggaa catccaggag cgcaagcgca      4020
     aatatttgtg atggatgtag ctacctttgg agctgcatgc tcaccatgca tcgcgcaata      4080
     tttgaaaaac aaaaatgccg aggaatacaa ggagcagtwt ccagaagcag cgcgagcaat      4140
     agtcgacaaa cactatgttg atggctacct ggatagtgtc gaaacgttag aagaagcggc      4200
     gaagctgata gaggacgtaa agcacgttca cgctatggct ggaatggaga ttcggaactt      4260
     cgcttcgaat agtacggaac ttctccagcg cattggagaa gtacgcgaaa ctcagcagaa      4320
     gtcgatgagc ctggaagcaa gcgcagagag agtgctcggt atgatgtgga aaccgttgga      4380
     agacatcttc acgttccagt tggatctgaa ggaggaagtg cgaaacatcg tgacgaacaa      4440
     gattgtgccg acgaagcgcc aagtcctgcg gacgatcatg tctgtttttg atccgttagg      4500
     tctggtagcg cattttgttg tgcacggaaa gctgattatg caacgaatct ggagggctgg      4560
     cctaaactgg gacgagcaga tcgacggaga aatattggag gactggcgta agtggagcgg      4620
     tctgctgacg acaataaccg aagtgagcgt cccaagatgc cttcttcccg gcagtggaga      4680
     tacttcacaa gaaccacaac ttcatgttct ggtggacgct agtgagaacg catacgcttg      4740
     cgtagcatac ctcagaactt cgtgcaatgg actccctcga tgcacgttga tagcagcaaa      4800
     gacaaaggta gcgccactaa aacctctatc aattccacga ctggagttgc aagcagcgct      4860
     gatcggtagc cgtctggtgg acactatcac caaggctcta acgattccaa tatcagctcg      4920
     atacctatgg acggattctt caacggtctt agcttggctg agatcggaga cccggcagta      4980
     tcatcagttc gtcggtttcc gagttggaga aatcttgagc acgactacag ttaatgagtg      5040
     gcgaaaggtt ccatctaagc tgaacgtggc ggatcaagca acgaagtgga aggacgggcc      5100
     tagtttcgac ccaaaggact ggtggtatgc tggaccaagc ttcctatccg acccggaaga      5160
     aaaatgggta gaagattcgg cggaaaagtt cactacaacg gtagatatgc gagcgtcgtt      5220
     tctacttcat cgaaaccaag gtcaagcttc aatggtggcc gtggaacgat tctcaaagtg      5280
     ggtgagactg ctgcgcacac accgcctacg tcgttcgggc ggccaagcga ttcctaggac      5340
     tgaaagcgac cggccagctg atgcaggaag agatacagac agctgaaaca cttctgtggc      5400
     ggcaggcgca aatggaggcg taccctgacg aatacgcggc actcgagtac aacaaggaac      5460
     atacaagcga ggagccgaag cagttagcaa aatcgagttc gctgttcaag atgtcaccga      5520
     tgattgacga cgacggagtg ctaaggatga acagtcgcat akccgcggcg ccagtagttt      5580
     ccaccgatct caaatacccc atttttcttc caaaagagca tcgagtaact atcctgctcg      5640
     ttgaaagcta ccacatccgc tttctgcatg gaaacaatga gacggtattt aacgatgtaa      5700
     ggcaacgctt ccaagttccg cagctccgtt cggtcattgc gaaggtggcc aagcagtgtc      5760
     aacattgtcg agtcagaaag cagttccgcc ccaatgatgg caccacttcc tgaaatcagg      5820
     ctaacgccgt tcatccggcc ctttacccac accggagtgg actatttcgg gcccattctt      5880
     gtcaagcaag gcgcagcaca gtcaagcgat sgatcgccct atttacgtgc ctgtcataag      5940
     ggcagtgcac ctagaagtcg tccacagctt atcgacacaa tcctgtgtta tggccatccg      6000
     gagattcgtg gctcgcagag gttcacctgc taccttttgt tctgacaacg gaaccaactt      6060
     catcggagcg aacaatctgc tgaaggaaca actccggacg atcagcaagg actgtgcgac      6120
     gacatttacg aactcggcta cgaagtggct cttcaatcct ccgcttgcgc cccatatggg      6180
     aggtccatgg gagcgcatgg tcaggtccgt gaaggtggcc atggcggcga ttgcggacca      6240
     tccacgtcat cccaatgacg aagtccttga aaccgtgctg ctggaagcag aatcagtagt      6300
     caattcaagg ccactcacct acgttccgct ggaccatgca acgcaggaag ctttatcccc      6360
     aaaccacttt ctgctatacg gaacacaagg catcaaccaa cctagtcggg acttcgtgca      6420
     gagcactcga cactgagaga tagttggaga ctagcgaact acctcgtcga caccttctgg      6480
     acacgttggg tacgsgagta cctccctacg ttgacgcgcc gcaccaaatg gttccagcca      6540
     gtacgaccac tagaacctgg agatctggtc attgttgtcg aagaggggaa gcgtaacgga      6600
     tggattcgtg ggagaattac ggaagttctc ccagggaagg atggacaagt acgaagagcg      6660
     gtagtacaaa cggctcgtgg actgatgaac cgacctgcca ccaagttagc actgttggaa      6720
     gttcgaagtt cggaagtcga aggatcgcaa gcccgggaaa ttggcgtacc ggaactacac      6780
     gggcgggggg a                                                           6791
//
ID   BEL-634_AA-LTR repbase;    DNA;    INV; 517 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-634_AA_;
KW   Pao_Bel_Ele201; BEL-634_AA-I; BEL-634_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-517
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 517 BP; 184 A; 96 C; 86 G; 151 T; 0 other;
     tgttggcgaa accacagggc agttctcgca ctcgaatgag tgagtcccga ctacaccctt        60
     ttcgcttgaa cgatccgttg acagctacgt caactgtcat cgggagtttg acgttttgat       120
     tcaccctttt gctcaatcat tcttgaacaa ctatcacgag tagtaattaa aaccctacaa       180
     ctaaacttaa acttgaaata gtacggattt gttaaaatta tcaattggat tattgttata       240
     ttgaattcga aaggtaattg ctagtgatac ctgctaaaat atattattct atatgtaaaa       300
     ctattatcac agatcgaaat aaaagggaag cacagtcagg acaaaattat aacctaaaac       360
     gtaaaaagaa caccaaaatg taagtaatga actaaaacta tgtgaattga acttaatcta       420
     acatgcaata aataaaactt ttagctttga agctgtgtca aaggacctgc taccaaggag       480
     tgttcaatta tagtccgaac tgcgattttt cccaaca                                517
//
ID   BEL-635_AA-I repbase;    DNA;    INV; 5982 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-635_AA_;
KW   BEL-635_AA-LTR; Pao_Bel_Ele49; BEL-635_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5982
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5019-5582] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..5981
FT                 /product="BEL-635_AA-I_1p"
FT                 /translation="MEDLRDSIDGHNCKRCTRPNSAEDQMVACDKCHEWEH
FT                 FGCANVDGNVRDQSYVCKECTGETSGQLHKGTAGRENRPKHSDSRSVMTTR
FT                 SKTKLKTPVGSQAGSRVSERVAVLEAELKIVEEERLAKEEEMKEKEKMKKK
FT                 EIEERKRQLEEKRKLLEEEAELRQLQLAEERKIQEEQQQIRQDSLTKRKAL
FT                 LRQIAESNAGSKCASEVDVQDNVSSWLADLQLTGRPLECGEDNQGRHKEVV
FT                 NPSPTGIPTGPVDAVNPQVTSRMGVKNPVVHHVYQTNPNGSTRFSPPNPVQ
FT                 RDLNYQHALHDNPWIPSRYRAMATEEPIGRMVENNTPTVLGAEHIAARQVM
FT                 GKELPTFCGNPEDWPIFICCFEQTTITCGYSDAENLIRLQRCLKGPALEAV
FT                 RSRLLLPSSVPSVIETLRTLYGRPELLIRSLLRKVQQVAAPRHDRLESVME
FT                 FGLAVQNLVDRLEAAHQESHLTNPILIQQLVEKLPGPLRLDWGIYKKHYPM
FT                 PTLRTFGKFMSQLVSAASEVTFDLPVASGGFKNERYKPREKAHIQAHSIGS
FT                 AIQTSSSSKFSTNSRKTGKICVVCDCEGHRVCDCLKFKAMNVDERWKTIQH
FT                 KGLCRTCLNNHGKWPCKSWQGCGVQDCRNKHHTLLHCPVPSAPSHSVNVSS
FT                 NVSMSSEGTYTFFRVLPVVLHYKEQSVMVFAFIDEGSELTFLDASVASQLG
FT                 VNGENEPLTLKWTGNVTRREAKSQKVHLEISGKKGKTKHQLVGAHTVSSLS
FT                 LPSQSMRYQELAKKFPHLRGLPIEDHARIQPQLLIGLDNLQLGVPLKIRQG
FT                 RQGEPIAAKCRLGWGIYGSKPDAGSSQAVINFHMTEVDNPDMLLNEQLKNF
FT                 FTVESMGTEGTQAKLESDEDKRAKRMLADTTRRTSSGFEVALLWKTDNPEL
FT                 PDSYSMAARRLQSLEKRLKQDPSMKQKIREQIAEYERKGYAHRITNAELET
FT                 ADPRRVWYLPLGVVVNPKKPEKIRLIWDAAAKASGISLNSQLMKGPDFLSS
FT                 LTAVLIQFRHFPIAVSGDIREMFHQLKMRAEDQQSQRFLWREDPSERPEIY
FT                 VMDVATFGATCSPASAQYVKNVNAAAFSDQYPRAVIAIQKYHYVDDYLDSF
FT                 ETIQEAKQVVKEVRTIHAEGGFELRNFRSNSSELLRSIGEKTSNNIKDMTL
FT                 ERSAISESILGMRWVPVEDTFTYTFSLRDDLRTILENNHNPTKREVLKILM
FT                 TLFDPLGFIAFFLIHGKVLMQDIWASGCDWDEQINEALCIRWKQWTRFFPQ
FT                 LDALRIPRCYFKSLVPGDKNQLQVHVFVDASEGAYACVAYFRLATGEDVSV
FT                 SLIGAKSKVAPLKSLSIPRLELKAAVLGVRYLESISNQHSFKVHQRYMWSD
FT                 SATVLAWINSEHRRYNKFVAVRIGEILTSTEQKNWRWVPSKLNIADQATKW
FT                 NEGPKLQSDSQWFQGPSFLHNAEEEWPRQSKLPLTEEELRPNHSRVLHHKH
FT                 HQPIIDVSRYSKWIRLHRVMAYVLRFLDNVQRKVQGIPLQVGTLQQEELER
FT                 AECELWREAQSEVFANEIRVLSSSKGGPDDQHLTVNKSSPIYKTWPYVDDK
FT                 GVLRKRSRAGAATFMSFEAKYPVILPHDHPITFLLIDWYHQFYRHANRETI
FT                 ANEVRQRFEIARLRSLIYKVAKSCVWCRVMKAKPQPPIMAPLPEYRVTPYV
FT                 KPFTSVGLDYFGPLLVRVGRSQVKRWVALFTCLAIRAIHLEVVHSLSTESC
FT                 VMAVRRFVARRGSPAEFYTDNATCFQGASRELQEEIGNKLSTTFTSAHTKW
FT                 RFIPPATPHMGGVWERLVRSVKVAAGTILEAPRKPDDETLETILCEVEAMI
FT                 NCRPLTYIPLDSADQESLTPNHFLLGSSNGSKMMPMEPLKFIGNLRSSWKL
FT                 AQSITDSFWTRWIKEYIPIITRRSKWFENVKDLEVGDLVMVIGGPSRSQWV
FT                 RGRIVEVVKGKDGRVRQAMVKTSSGVHRRAAVNLAVLDVLDEAKPGNGSSD
FT                 VPGFTEGG"
XX
SQ   Sequence 5982 BP; 1778 A; 1274 C; 1496 G; 1434 T; 0 other;
     aacttaaaga tattttgtac gtgggttccg aaatggaaga tcttcgcgac tcgatagatg        60
     gccacaattg caagcgatgt acccgaccga attcagcgga agaccaaatg gtagcttgcg       120
     acaaatgcca cgaatgggag cattttggtt gcgcaaatgt tgatggaaac gtaagagatc       180
     aatcgtacgt ttgtaaggag tgtacaggag aaacatcagg tcagctacat aaaggaacgg       240
     caggacgcga aaatcgaccc aaacactcgg attcccgtag cgtaatgacc acgcggagta       300
     aaacaaagct gaaaactccg gttggaagcc aggctggctc tcgtgtttct gaacgggttg       360
     ctgttctgga ggcggagctg aaaatagtag aagaggaacg tctggcgaaa gaagaggaaa       420
     tgaaggaaaa ggagaaaatg aagaagaagg agattgagga aaggaagcgt cagttagagg       480
     aaaagagaaa gttgttggaa gaagaagccg agttacgaca gctgcagtta gcggaagaac       540
     ggaagattca agaagagcag cagcagattc ggcaggattc tttgacgaaa aggaaagcac       600
     tcttacggca aatcgcagaa agcaacgctg gcagcaaatg tgcatccgag gtcgacgttc       660
     aggataatgt ctcatcgtgg cttgcggatc tgcaacttac tggaagaccc ttggaatgtg       720
     gcgaggacaa tcaagggcga cataaggaag tcgtcaatcc aagccctact ggcattccta       780
     ctggccccgt agatgcagtc aatcctcagg ttacctcgcg aatgggagtt aaaaatcctg       840
     tcgttcacca tgtttatcaa acgaatccaa acggttctac tcgtttttcg cctccaaatc       900
     cagtgcagag agatctcaac tatcaacacg cattgcacga caatccttgg attccatcta       960
     ggtatcgtgc catggcgaca gaggaaccaa taggacgaat ggtcgaaaac aacacgccga      1020
     cagtgcttgg agccgaacac atagcagctc gtcaagtgat gggtaaagag ttacctacgt      1080
     tctgtggcaa tcccgaagat tggcccatat ttatctgctg cttcgaacaa acaacaatca      1140
     cctgcgggta ttctgatgct gaaaatttaa tccgattaca aaggtgcctg aaaggacctg      1200
     cactagaggc agtacgcagt cgcctattgc taccgtccag tgttccctcg gtaatcgaaa      1260
     cgctacgcac tttatatggt cgtccagagt tactgattcg atctttgcta cgaaaggttc      1320
     agcaagttgc ggctccaagg cacgaccgtc tagaatcggt aatggagttt ggattagcag      1380
     tacaaaactt agtagaccgc ctggaggcag cgcatcagga aagccattta accaatccta      1440
     ttctaataca acaattggtt gaaaaactac caggtcctct caggctagac tggggaatat      1500
     acaagaaaca ttaccccatg cccacactgc ggacatttgg taaatttatg tcccaattag      1560
     tcagcgcagc aagtgaagtt acgttcgact taccggtcgc tagcggtggt tttaaaaatg      1620
     aacgatataa acctagagaa aaggcccata ttcaagcaca ttcaataggg tctgcaatac      1680
     aaactagttc ttcctccaaa ttttcgacta acagtaggaa aactggtaag atttgtgtag      1740
     tttgcgactg tgagggtcat agagtctgcg actgtctcaa gttcaaggcg atgaatgtgg      1800
     acgagcgatg gaaaaccata caacacaaag gactttgcag aacatgcttg aataatcatg      1860
     ggaaatggcc atgtaaatcc tggcaaggat gtggtgttca agattgtcgc aataagcacc      1920
     atacattgct ccactgtcca gttccatctg cgccatcgca ctcagtcaat gtttcttcta      1980
     atgtctccat gtcttctgaa ggtacgtata ctttcttccg cgtgctaccc gttgtactgc      2040
     attataaaga gcaatcagtc atggtatttg ctttcattga tgaggggtcg gagctcacct      2100
     ttctcgatgc gagcgttgca agtcaattgg gcgtaaatgg cgagaatgaa ccgttaacat      2160
     tgaaatggac tggaaacgtg acccgaaggg aagcaaaatc tcaaaaggtg cacttggaga      2220
     tctccgggaa aaaagggaag acaaagcatc agttggtcgg tgctcatacc gtaagtagtc      2280
     tgtccctacc ttctcagtcc atgagatacc aagaattggc aaaaaaattc cctcatctgc      2340
     gtggtcttcc gatagaagat catgcacgga tccaacccca acttttgatt ggactggata      2400
     atctgcagtt gggtgttcca ttaaaaatcc gtcaaggacg gcaaggagaa ccgattgctg      2460
     caaaatgccg actaggttgg ggtatttatg gcagcaaacc agatgctggc tcttcccaag      2520
     cagtgataaa cttccacatg accgaagtgg acaaccccga catgctgttg aacgagcagt      2580
     tgaaaaactt tttcacagtt gaaagtatgg gaacagaagg tacgcaagcg aaactggaat      2640
     ctgacgagga taaaagggcc aaacgaatgc tggcagacac taccaggcgt acctcatcag      2700
     gatttgaagt agcccttttg tggaagactg ataatcctga gctaccggat agctattcga      2760
     tggcagcacg taggctgcaa tccctggaga agaggttaaa gcaagatcca agtatgaagc      2820
     agaaaatacg agagcagata gcggaatacg aacgaaaggg ttacgctcat cggataacga      2880
     atgctgagct agaaacagct gacccacggc gagtgtggta cttaccactt ggtgtggtag      2940
     tgaatcccaa aaagccagaa aaaataaggc taatttggga cgcagccgca aaagcatcag      3000
     gaatttctct taattctcaa ctgatgaagg gtcccgactt tctgtcgtca ctaacggctg      3060
     tactcattca gtttagacat tttccgattg ccgtaagtgg tgacattagg gaaatgtttc      3120
     accaactaaa aatgcgagct gaagaccagc aatcccagcg attcctgtgg agggaagatc      3180
     cgtcggaacg tccggaaata tatgtgatgg atgtggctac ttttggggca acgtgctccc      3240
     ctgcgtcggc acaatatgtg aaaaatgtca acgcggcggc attctccgat cagtatcccc      3300
     gagctgtaat tgccatccag aaatatcatt atgtagatga ctatttggat agctttgaga      3360
     ctattcaaga agccaagcag gtagtgaagg aggtgaggac aatacatgca gaaggaggtt      3420
     ttgaattaag aaatttccga tcgaactcat ctgaactgct gcgcagcatt ggagaaaaga      3480
     cttcaaataa tatcaaagat atgacgttgg agcgcagcgc gatatctgaa tcgatactcg      3540
     ggatgagatg ggttcctgtc gaggatacat tcacgtatac attctctcta agagatgatc      3600
     tgcgcacaat tttggagaat aaccacaatc caacaaaacg cgaagtactg aagatactta      3660
     tgaccctttt cgatccttta ggcttcattg ccttttttct tatacatggg aaagtgctca      3720
     tgcaagatat ctgggcctca ggatgcgatt gggacgagca aatcaatgaa gctttgtgca      3780
     ttcgttggaa gcaatggacg cgattctttc cacaacttga tgcattgcgc attccacgct      3840
     gctattttaa gtcgctggtt ccaggtgaca agaaccagct acaggtccac gtgtttgtgg      3900
     atgcaagtga aggtgcctac gcttgcgttg cctatttccg cctggcaaca ggagaagacg      3960
     taagcgtgtc actaatcgga gctaaatcca aagtggcgcc tctcaagtcg ttgtctattc      4020
     ctagattgga actcaaggca gcagtccttg gggtgagata tttggaatca atcagtaatc      4080
     agcattcctt caaagttcac cagcgataca tgtggagtga ctcagcaaca gtgttggcgt      4140
     ggataaattc cgaacaccgt cgttataaca aattcgtagc cgttcggatt ggagaaattt      4200
     taacgtctac ggagcagaaa aattggcgct gggtaccttc caagttgaat atagcggacc      4260
     aagccaccaa gtggaatgag ggaccgaaac ttcaatcgga cagtcagtgg ttccaaggtc      4320
     cgagtttcct acataatgca gaagaagaat ggccgaggca gtcaaaactt ccactaaccg      4380
     aagaagaatt acgcccaaac catagccgcg tgttgcatca caagcatcat cagccgataa      4440
     ttgacgtcag tcgctacagt aaatggatca ggttacaccg tgtaatggcg tatgttctgc      4500
     gctttcttga caatgtgcaa cggaaagtac agggcattcc actgcaggta ggaacgctcc      4560
     aacaagagga actagaacgt gcggagtgcg agttatggag agaagcacag tcggaagttt      4620
     tcgctaatga aataagagtt ctatctagca gtaaaggtgg tcctgacgat caacatctca      4680
     ccgtgaacaa atccagccct atctataaaa cttggcctta cgttgacgat aaaggcgtac      4740
     tacggaaacg tagtcgagca ggagcagcaa ctttcatgag ttttgaagcg aagtatccgg      4800
     tgattctacc ccatgaccat ccgattactt tcttgctcat cgactggtat catcagttct      4860
     accgccacgc taacagagaa actattgcaa atgaagtaag acaacgtttc gagattgcaa      4920
     gactacgttc cctgatttac aaggtagcaa aaagctgtgt ttggtgtcgt gtgatgaaag      4980
     caaaacctca gccacccatt atggcaccac tcccggagta tcgagttacg ccttatgtta      5040
     aaccgtttac atctgtcggg ttggactatt tcggcccatt gctggtgcga gttgggcgta      5100
     gtcaagtaaa acggtgggtt gctctattta cctgcctggc aataagggct atacacctcg      5160
     aggtcgtgca tagtctttca actgagtctt gcgttatggc agtacgacga tttgtggcaa      5220
     gacgcggttc accagcagaa ttctatacag acaacgcgac ctgttttcag ggtgccagca      5280
     gggaattgca agaagaaatt ggtaataaac tctctactac atttaccagt gcgcatacaa      5340
     agtggagatt cattcctccc gcaacaccac acatgggcgg tgtttgggaa cgcctggtgc      5400
     gttctgtaaa agtagcagct ggaacaattt tagaagcgcc acggaaaccg gatgacgaga      5460
     ctttggagac cattctgtgc gaggttgaag cgatgatcaa ttgtcgtcct ctcacctaca      5520
     ttcctttaga ctctgcagat caggaatctt taacgcccaa tcatttttta ttgggcagtt      5580
     ctaatggatc aaaaatgatg ccgatggaac ctttaaagtt tattgggaat cttcgcagta      5640
     gctggaaatt agcgcaatcc attacggaca gtttttggac gagatggatt aaggaataca      5700
     ttccaatcat caccagacga tcaaagtggt ttgaaaatgt taaggacctt gaagtaggag      5760
     atttggtgat ggttattgga ggtccgtcga gaagtcaatg ggtgcgcggg agaattgtag      5820
     aagtcgtgaa aggcaaagat ggcagagttc gtcaagcaat ggtgaaaaca tcttcaggag      5880
     ttcatcgacg agcggcggtg aatctagcag ttttggacgt cttagatgaa gcaaaacctg      5940
     gtaacggatc ctcggatgtt ccaggattta cggaaggggg aa                         5982
//
ID   BEL-635_AA-LTR repbase;    DNA;    INV; 618 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-635_AA_;
KW   Pao_Bel_Ele49; BEL-635_AA-I; BEL-635_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-618
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 618 BP; 218 A; 104 C; 107 G; 189 T; 0 other;
     tgtgacggca aacccctcgt tgcagcgacg ccgtagatga aagaagagga gttatgtcaa        60
     cggtcgatga cgtggactgt cagatcgata agtgattttg catatcatgc taaataaatt       120
     ggatagaaca atcaagttat tttcagtcag tgtgaactaa aatttcttaa gcaaatctta       180
     aattatcaag ttaatctagt gttgaattca tgcagttagt gttcttaaac ctagtgagta       240
     aaacctttat gcagaattgt gaaataatac ttaactaaat tcctatttct attgatctcg       300
     atattgttta cttagaacct aaattcaact taatactaga tcacagttta atctttggct       360
     agagtttggc tacacgcagt aagtaataga aaatgatcct aaaaagaaat attacaagta       420
     ataaacattt gtaggaagca agtatcatca gcagtcgacg aaacgaatcg aacgtttcgg       480
     aggttatcac caaaatatgt aagtgacaat agatttacat aaagagattc taccttacaa       540
     taaaatttat ttgtagcttt aagcagtaca ctacaaccct gtgtttgctc taaagaattt       600
     ggcattccca cccccaca                                                     618
//
ID   BEL-636_AA-I repbase;    DNA;    INV; 7387 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-636_AA_;
KW   BEL-636_AA-LTR; Pao_Bel_Ele148; BEL-636_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7387
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [6357-6935] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2028..5549,5553..7301)
FT                 /product="BEL-636_AA-I_1p"
FT                 /translation="MLGAGKSPSLRALQLKLKEVLLMFNDIQHFVSKYRAG
FT                 TSAVQIQVRLSKVDELWKMFSDTLVEIMSHEDYVADEEKYAKERQQFSAQY
FT                 YNIKAFLLEKLEQIQRAAMDHSTNVHDSSTLNISEHVRLPQIKLQTFKGDI
FT                 DEWISFRDLFISLIHSRTDLPDVEKLHYLKGCLMGEPKGLIDPLAITAANY
FT                 NVAWNLITKRYDNSKQLRKRQVQALLNMPYIAKESVSELQTLVEGFERIVQ
FT                 TLDQVVEVAEYKDLLLVNMLSSRLDPITRRSWEEQSSTKDKDTFKDLVDFL
FT                 QRRIQVLASIPARSSDSKVSSTNASRQRAVVKASFNSASQSSTSCACCSEN
FT                 HFLYSCPAFQGLSVRDREGVLRKHSLCRNCFRFGHQGKDCRSKYSCRTCKG
FT                 RHHTLVCFKQNADTVSTVGNSASNCPPDNGEPSCPGTNTVASVATSEISVC
FT                 NAAGAASQVFLATTLILVEDNEGNQYGARALLDSGSECNFVSERLCQLLKV
FT                 VRSKTDVRVQGIGQTTSLVKHQVQIKVRSRVSSFARSVNFLVLPKVTVNLP
FT                 TTTVDTRELVIPEGVRLADPGFFKSSGVDMVLGIELFFSLFDIDRKISLGD
FT                 NMPTLIDSVFGWVVCGTMAMPKAISQVNCNLSVKDRLENLLTRFWECEEVA
FT                 DQIKSSPEETLCEEQYQESVKRAEDGRYIVGLPMDGVKLQRLGESRDIALR
FT                 RFYSTERRLDRDSNLRQQYVAFMDEYLQLRHMKEVQEIASEGSKRCYLPHH
FT                 PVVKEASTTTKVRVVFDASCRTSNGISLNDALYAGPVIQEDLRAIIIRGRT
FT                 RQIMVVADVEKMFRQIWIRPEDRHLQCILWRSSPMEDVRTYELNTVTYGTK
FT                 PAPFLATRTLQQLATDEGRRFPSAAVAVREDTYMDDVITGADNVEDATRLR
FT                 CELQDMMEAGGFHLRKWASNCSKVLEGVPVENLAIPNTEEITLESNPSITT
FT                 LGLVWVPGTDKLRFKFQVPQLNPAELLTKRKILSTIATLFDPTGLIGAVIV
FT                 EAKIFMQRLWTIEGEDGQRLDWDQPVPPKVGEEWCKFYEHLPRLQEVEVHR
FT                 CVIIPAAVIVEVHCFSDASMKAYGACIYLRSQDSSGNILVRLLASRSKVAP
FT                 LKTQSLPRLELCGALLGTQLCQKVREAIRFKGEIFFWTDSTCVLRWIAATP
FT                 AIWTTFVANRVSKIQLSDGCHWGHVKGTENPADLISRGLNASNIIDNALWW
FT                 SGPFWLQHPQEQWPVRDAGTNEEGEEERRRCATANTVSTCDEFNQWYIAKF
FT                 DSYDDLIRRTAYWLRMMELLKQPKDQRKNEEFLTIVERKRAEQVLIRRVQM
FT                 EAFPEEWKALSKGSSVSAKSPLRWFHPYISKEDGLLRIGGRLNHSQEPENK
FT                 KHPPILPARHMFTRKLLQSFHERLLHAGPQLLLATVRLHYWPLGGRSLARQ
FT                 LVHKCLRCYRSQPSTVQQFMGDLPSSRVTVSRPFSRVGVDYFGPVYVRLGP
FT                 RRTAVKAYVALFVCFCTKAIHMELVTDLSTERFLQALRRFISRRGKPSDIF
FT                 SDNGTNFVGARNQLTELMALPRNRDCHEKISKECNAEGIQWHFSPPSGPHF
FT                 GGLWEAAVRSAKKHLLKVLGENVLTFEDMNTLIVQIESCLNSRPLTQLTED
FT                 PEDLTPLTPAHFLVGSSLQGLPEYDYTEIPFNRLKQWHAVQQKFQHFWIRW
FT                 KREYLAQLQGRMKRWKPPVEIETGKLVIIQDDNQPPLRWKMARIHQLHPGD
FT                 DGVVRVVTLKTSNGYLKRPVERICLLPLPNQDVVVQP"
XX
SQ   Sequence 7387 BP; 1875 A; 1758 C; 1910 G; 1842 T; 2 other;
     tgttggtcct tcgagccgga tcagggaccc ccggtaggac ttggaaccca caaacccgct        60
     cattatcacc aaaacgccat ccgctggaac gccatttgca accgccaaat tgtcgcatca       120
     attgtcgcct attgtcgttg gatacaaagg ataacgccat catctgtaag gaacatagga       180
     gggtgtcacc atcttggacg ctacatctgg cttggacatc agcaccgttg gctattgtgt       240
     aggtcagtat agctactata tatgtcctgc cgaagctgga cattccggac tccttctaac       300
     actattctct attggtaata cggaatccaa cgacaacgac gtacaagcac ctggaaatcc       360
     cctggaatat tcattggatc ggaaacaacc ctatgccctg gaacacactc tttcggattg       420
     gaaggttcac attcgaccgc tttgaagaca tcattggact tcggacttgc gctggacctg       480
     ttggcagtaa cattttctaa ggtaactgca tgaatgtacg cgcggccccc cggcggccgg       540
     ggccgccggg ccgggggggg ggcccgcgcg gggccgcccg gccccgggcg gcccgtatgt       600
     atatgtccag ccggagcaat tcgcgcaagt actaacacca cacttcgatt ttcctatgcg       660
     ttgagaacca ctggaagcaa caaggattac gtcatcgggg atacccttgc atattcatca       720
     ttcgtcatcg aaggcaacaa cattcgacta cttcgggaca tcgagcacgt gcgtttggta       780
     cgacgtcatc attacaacgt ggtcaccgag agaggctctc tggcatatca tctacatcgg       840
     caacggcttc gtcggactat cgagatatcg cttgctattg gtgtcgggcg agtgaaacac       900
     catacggaag gcctgcacaa cacatcgatc gaagaggagg ccagcgtaaa tggtctgtca       960
     ggttagtgaa caatagtatg tgttcagcca gcctggacat tgcagactat atacacattt      1020
     taattatata atcctcttcg accggtattg ttgttgaccg tttgcacact gcatgagccc      1080
     tgagaacaaa gaacttgttt acgtctggat cgaaaacttg tttacgtctg gatcgagatt      1140
     cggtacctat tctgctattt tgcagacaac tttcctgtaa ggttagttac tgcagtatat      1200
     ggccagccga ggccgactca ttttgatact acatgaatct atccccttac acatgtttgc      1260
     ttgatcgaga ttgtattgga tttggactga ttttacctac cgtactgctg cactaccgcc      1320
     cccgcggccc ccggcggccg gccccggccg ccccggcgcc ccgcgccccg gccccccgcc      1380
     ggggcgcggg ccccgccggc gcggggccgc gcgcccccgg ggcggccgcc gcgccgggcc      1440
     ggccgggcgc gccccggccg ggccggggcc cggggccccg ggcgcgcggc gccgcgccgc      1500
     cggcccgccg gggggcgggg cgcgcgccgc cgcccgggcc ccgccgcccc gcgcgggccg      1560
     ccgccgccgg cgggccggcg ccgccggccg ccggccggcg ccgcgcccgc cccgcccgcc      1620
     cgcgccggcc gccgcggcgg cggcccccgc ccgggggcgg tacttcgtga gaaggccaac      1680
     agcgcaccgt agcttttgtg aaggtttgtg ctacagtata tggcctgccg aagttaggtt      1740
     tattttggat actacattgc ttattttgca ctctttgatc actgctgttc gagtcgtcac      1800
     cgtggatgcg acacttgatc gatcggttgg actgctaatg cgatttggat atattttgga      1860
     attggacttg gattttcttc agcatttcga aaccttttgg tcgaagtgac tgttccgtca      1920
     ggtcagtctt actcagtata tgtctagccg aggctagaca tttattttgc tactacacct      1980
     gaatcttttt tcgatttacc ccgaacgtgt gagaaccaac aatcatcatg cttggagctg      2040
     ggaagtcgcc gagcctacga gcattgcagc tcaagctcaa ggaggtcctg ctgatgttca      2100
     atgatattca gcatttcgtc tcaaaatata gagcaggtac tagcgcagtt cagattcagg      2160
     ttagattaag caaggtagat gagttgtgga aaatgtttag cgataccttg gttgagatta      2220
     tgtcgcatga ggattatgta gcagatgagg aaaagtatgc taaggaaaga cagcagttta      2280
     gcgctcagta ttataacatt aaggcattcc ttttggagaa attagagcag atccaacgag      2340
     cggcaatgga ccattcaact aatgtccatg acagctctac gttgaacata tcggaacacg      2400
     ttaggttacc gcagatcaaa ttgcaaacct tcaagggaga tatagacgaa tggattagtt      2460
     ttcgagattt attcatttcg ctcattcatt ctcgtacgga tttacctgat gtcgagaagt      2520
     tacattattt gaaggggtgc ttgatgggtg aacccaaagg attaatcgac cctctagcaa      2580
     ttaccgcagc caattacaac gttgcttgga acctgatcac taaacgttac gataacagca      2640
     agcaacttag gaaacgacaa gtccaagccc ttttgaatat gccctatatt gccaaggaat      2700
     cggtttcgga actgcaaact ttagtcgaag gttttgagag gattgtccag acccttgacc      2760
     aggttgttga ggtagcggaa tacaaggatt tacttttggt caacatgctg tctagtcgat      2820
     tagaccctat tactcgtcgg tcatgggagg aacagtcttc tacaaaggac aaggatacgt      2880
     tcaaggattt ggttgatttc ttgcaacgtc gtatacaagt attggcatcg ataccggcac      2940
     gatcatcgga ctccaaggtt tcatcaacca atgcatcacg gcagagggcc gtggtgaagg      3000
     ctagcttcaa ttctgcgtca caatcatcta ccagttgcgc atgctgttcg gagaaccatt      3060
     tcttgtatag ctgtccggca ttccaaggac tgtcagttag ggatcgcgag ggtgtgctac      3120
     ggaagcactc gttatgccga aactgcttca gatttggtca ccaagggaag gattgtcggt      3180
     cgaagtactc ctgtcgaaca tgtaaggggc gacatcatac actcgtttgc ttcaagcaaa      3240
     atgcggacac tgtttctacg gttggaaata gtgcttcaaa ttgtcctcca gataacggag      3300
     agccatcatg tcctggaacg aatacggtag cgagcgtggc gacttcggag atatctgtat      3360
     gcaatgcggc aggggcagca tcgcaagttt tcttggctac aacgttaata cttgtcgagg      3420
     acaacgaagg caaccaatac ggagcgcgtg cgcttttgga ctctggatcc gaatgcaact      3480
     ttgtttcgga aaggctttgt cagcttctca aggtggttcg atcaaagact gacgtcaggg      3540
     tacaaggaat cggtcaaact acatcactgg tgaaacatca ggttcagatc aaggttcgat      3600
     caagggtttc atcattcgct cggtcggtga attttctggt tttaccgaag gtaaccgtca      3660
     accttcctac tactacggtg gatactcggg aattggtcat tcctgaaggc gtacggctag      3720
     cggacccagg tttcttcaaa tcaagtggag tagacatggt tctaggtatt gaactcttct      3780
     ttagcttgtt cgatatcgat cgcaaaatat cgctcggaga caatatgccc acgttgatcg      3840
     attcggtgtt tggttgggtg gtgtgcggca ccatggcaat gcccaaggcg atatcccagg      3900
     tcaactgtaa tctttcggtg aaggatcgtc ttgaaaactt actcacacgg ttttgggaat      3960
     gcgaagaggt cgcagatcaa atcaaatctt cacctgaaga gacgctttgc gaggaacaat      4020
     atcaggaatc agtcaaaaga gctgaagacg gtagatacat cgttggtctt cccatggacg      4080
     gtgttaaact gcagcgactt ggcgagtcaa gggacatcgc cttgcgtcgt ttctacagta      4140
     cggaacgaag attggatagg gattccaatt tacgtcagca atatgtagca ttcatggacg      4200
     aatacctaca gctacgacat atgaaggagg ttcaggaaat agcaagcgaa ggtagcaaac      4260
     ggtgttacct accacaccat cctgtagtga aggaggcgtc cacgacaacc aaggtacggg      4320
     tcgtgtttga cgcatcctgt aggacgtcca atggcatatc actcaacgat gcgctctatg      4380
     ctggtccggt tattcaggag gatttacgag cgatcatcat tcgtgggcga actcggcaga      4440
     tcatggttgt ggcagacgtg gagaagatgt tccgccaaat ttggatacgt ccggaagata      4500
     ggcatcttca atgcattctt tggcgttctt cacccatgga agacgtcaga acctatgagc      4560
     taaatacggt tacctacgga accaaacctg ctccatttct ggctacgagg actctacagc      4620
     aacttgccac cgacgaaggt cgtcggtttc catcggcagc agtcgctgtg agagaagaca      4680
     cttacatgga cgatgtaatc actggagcgg ataacgtgga ggatgcaaca agattgcgtt      4740
     gcgaactaca agatatgatg gaagcaggtg gttttcatct ccgaaaatgg gcgtccaatt      4800
     gttcaaaggt gttagagggc gtccccgtcg aaaatttggc tattcccaac accgaagaaa      4860
     tcactctcga gtcgaatcca tcgattacta cacttggcct ggtgtgggtg ccaggaacgg      4920
     acaaattaag attcaaattc caagttccac aacttaatcc agcagaattg ttgacaaaac      4980
     ggaaaatact gtctacgatc gccacacttt tcgatcccac tggactcata ggagctgtga      5040
     tcgtagaagc aaaaatattc atgcagcgtt tatggacgat agaaggtgaa gatggtcaac      5100
     gactggattg ggatcagccg gtaccgccga aggtgggcga ggaatggtgc aaattctatg      5160
     aacatctacc acggttgcaa gaggtcgaag tccatcggtg tgtaatcatc ccagctgcag      5220
     tcattgtaga ggttcattgt ttttccgacg cttcaatgaa ggcttatggg gcttgcatat      5280
     atttgcggag tcaagattcg tcaggaaata ttcttgtacg gctgttggca tcacgttcca      5340
     aggtggcacc tttaaaaacc caatctctac caaggttaga actttgtggg gcgctacttg      5400
     gaactcaact ctgtcagaag gtgcgtgaag caattcgttt caaaggagag attttctttt      5460
     ggaccgactc aacatgtgtc ttgcgctgga tagccgcaac tccggcgata tggacaacat      5520
     ttgtggctaa tagggtgtcc aaaattcaag stctatctga tggatgtcat tggggacatg      5580
     tgaagggtac cgagaatcct gcggacctga tttcccgcgg gctgaacgcc tccaatatca      5640
     tcgataacgc tctgtggtgg tcgggacctt tctggcttca acatccccag gaacagtggc      5700
     cggtaagaga tgcgggaacc aacgaagaag gagaggaaga acgacgtcga tgtgctacag      5760
     ctaataccgt gtcaacgtgt gatgagttca accagtggta cattgctaag tttgattcgt      5820
     acgacgattt gattcggcgt accgcttatt ggttgagaat gatggaatta ctcaagcaac      5880
     cgaaagatca gaggaaaaac gaggagtttt tgactatcgt cgaaaggaaa agggccgaac      5940
     aggttctcat tcgtcgtgtt caaatggaag cgtttccaga agaatggaag gcgttgtcga      6000
     aagggtcgtc tgtgtctgct aaatcaccgt taagatggtt ccacccctac atctccaaag      6060
     aggatggact tctgcgcatt ggaggaaggc tcaaccattc acaagagcct gaaaataaga      6120
     agcacccacc aattcttcca gcccgtcata tgttcactcg gaaacttctc cagtcgttcc      6180
     atgagagact tttgcacgct gggcctcagt tgttgttagc aacagtaagg cttcattatt      6240
     ggcctttagg tggaagaagt cttgctcgtc agttggtaca taaatgcctt agatgctatc      6300
     ggtcgcaacc atcgactgtc caacaattta tgggagattt accatcgtca agggtgactg      6360
     tatcgagacc attttctcgg gttggagtgg actattttgg tcctgtctat gtaagacttg      6420
     gtccaaggcg aaccgctgta aaggcatacg tggctctttt tgtatgtttt tgcaccaagg      6480
     ccatccatat ggaattggtg acagatttgt ccacggagag gtttctccag gccttgagac      6540
     gatttatttc acgcagaggg aaaccaagcg acattttctc cgataacgga accaatttcg      6600
     ttggagcgag aaatcagctg accgaattga tggctttgcc gagaaataga gactgccacg      6660
     agaagatatc caaggaatgt aacgcagagg gtatacagtg gcattttagt ccccccagtg      6720
     ggccacattt tggcggcctc tgggaagccg cagtacgttc tgcgaaaaaa catctgctca      6780
     aggtgcttgg cgaaaacgtt ttgaccttcg aggatatgaa tactctcatt gttcaaatag      6840
     agagttgctt gaactcacgg cctttaacac agttaaccga agatcctgaa gatttaactc      6900
     ctttaacgcc agcccatttc ctcgttgggt catcactaca aggccttccc gagtatgact      6960
     acactgaaat cccctttaac cgacttaaac aatggcacgc tgtccaacaa aaatttcaac      7020
     atttctggat aagatggaag agggagtatt tagcacaatt gcaaggcagg atgaaaaggt      7080
     ggaaaccacc tgtagagatc gagactggga aactagtcat tatccaagat gataaccaac      7140
     ccccattacg ttggaagatg gctaggattc atcagcttca ccctggtgat gatggggtcg      7200
     tkagggtagt cactcttaag actagcaatg gatatttgaa acgtcctgtt gaaaggattt      7260
     gcctgctccc gttaccaaat caagatgttg tagtccaacc atgaactcca cacgtaactc      7320
     gcagcgattc tggtcgaaga ggttcttata ttttcagaaa tcaccgtgct ttcaggatgg      7380
     gcgagca                                                                7387
//
ID   BEL-636_AA-LTR repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-636_AA_;
KW   Pao_Bel_Ele148; BEL-636_AA-I; BEL-636_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-578
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 578 BP; 149 A; 106 C; 154 G; 156 T; 13 other;
     tgtttacgag gaataagacc cctagctaca cctatggaac tggctctgct tggtgagatc        60
     ttcgaaccta cgaattagag aaattgggag aaaactggga gatgactact tcggtacctg       120
     aaccgtttcg aatcgatgac gtcaggtaga tagttcgggt gtcggagtta ggttcagaga       180
     tcgaacaaat gggttagttg gttgatgaga gatgcatagg cagatcagtt agctccktat       240
     agtccggtcg cgcggtcacm tamactcgat gtcwgggcct aagttttaaw ctgttagtcg       300
     taagtttcaa tgttagagtt taagttgcaa taaaagtgaa ctgtagagtg ttgtttccgt       360
     ccaaataaat ggtgtaattg ctgtacgtcg cgtgtgaagt tatawttgtc atmttgwgga       420
     aggaagagcc ggttttgtgg agaaawtcgc cagtgtcggg ackgtgtatt catccccata       480
     cagtccacat caaacccatt agatcgcagg aagggcgatt gggatttcta cctggaatcg       540
     gawkcktttg gttggtaggc cccacataca ccccgaca                               578
//
ID   BEL-637_AA-I repbase;    DNA;    INV; 6717 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-637_AA_;
KW   BEL-637_AA-LTR; Pao_Bel_Ele193; BEL-637_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6717
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5746-6306] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5188..6717
FT                 /product="BEL-637_AA-I_1p"
FT                 /translation="MLRTTAFVLRYVDNLKRRIERRQPISGILHQEELAKA
FT                 ERFLWKTAQAEAFPEEIAALKTTQGAPEARHCAVSKSSRIYKRWPFLDEEG
FT                 VLRTRGRIGAAPFVQYEAKYPAILPEKHPITALLVESFHCRFRHANRETIT
FT                 NEMRQRFDIPRLRVLVSRVMRDCTWCRVTKAVPIQPVMGPMPEARLRSFVR
FT                 PFTHVGLDYFGPVFVKVGRSQAKRWVALFTCLTIRAVHLEVVHSLSTVSCI
FT                 MAIRRFVSRRGTPAEFYTDNGTCFQGASKELAREIQSRNEAIALTFTSAHT
FT                 KWHFIPPSAPHMGGAWERLVRSVKAAIGTILDAPRRPDDETLETILFEAEA
FT                 MVNCRPLTYMPLESADEESLTPNHFLLGSSNGVKISPTEPVPEHATLRNSW
FT                 KLAQHITDQFWRRWIKEFLPVIARRSKWYEEARDLQVGDLVLAVNGNLRNQ
FT                 WIRGRVIQVFPGRDGRVRQALVKTATGVFRRAAVKLAVLDVEEKCKPDDEL
FT                 SETPDPRHGLRVGV"
FT   CDS           join(33..1037,1041..4460)
FT                 /product="BEL-637_AA-I_2p"
FT                 /translation="MEGHHNVTGFNCKRCQRPDSADEQMVACDICQEWEHF
FT                 NCAGVDGSIKDHPYVCSMCKPKKTGTKAKESLKPPEKNDKKSSRTSSKKAG
FT                 TKANPAPSSASSATRMAMLEAQMKLIEEQELQQKQDLEAEEELKKREMEAA
FT                 QRHLEEKRKLLDEENRLRELKLREEKEILEKRKVMRQQSMEKKNELLKQMS
FT                 ECSSKSGSNVDSIEKVSSWLAKQEDLPPHSEAHVQPSMPFPTLTQTAASTS
FT                 MQPPNAISSSVPGQMSVFATVPNCSMPPARFPTFPPAVQSNVPMLHTPPIP
FT                 AHSSQSPLIPVSTATVHVSQPVRSVFPPLVQPTALMSALNQQPPSMIAPTG
FT                 NEIGQSHPYSQAPASSAVPAVLDTNQLAARQVLGKDLPKFSGRPEDWPLFI
FT                 TSFEQSTLACGYSDVENLIRLKKCLEGNALESVRSKLLLPSSVPHVVQTLR
FT                 TLYGRPELLIRSLLEKIHQVPTPRYDRLETVIEFGIAVQTLVDHLVAAGQN
FT                 VHLSNPALMQELVEKLPGTMRMEWAVYKSRLPVATLQSFGDFMSGMVTTAS
FT                 QVSYELPSLDRSGKNDRSRARNKGVIQTHSTGLVAASTPTTSVIKIGKPAK
FT                 PCACCNREGHRLVECNRFKSLSTDERWKLVEQRSLCRTCLNSHGKWPCRSW
FT                 KGCEAEGCRHKHHTLLHGAIANSQSGMSASHLSAGQFCMFRIVPVVLHGKG
FT                 QKLLIFAFIDEGSSETLIEDAVAKQLGAHGPTEPLTLHWTGNVSREESNSQ
FT                 RVQLKIAAKNSESILDLHHVRTVSCLVLPSQTLRYGDMVRRFPHLGGLPIE
FT                 DYTNVQPKLLIGLNNLSLCVPRKLREGGPHDPVAVKCHLGWSIYGGVPASA
FT                 IRSVAVNFHAAAPSDPDKLLNEQLRDYFSIENNISASMEVDSEEDKRAKAL
FT                 LESTTRRIGQRFETGLLWKTDAIDFPDSYAMALRRLLSLERKLRQDPELGE
FT                 RVVQQIRDYEQKGYARKVTEQELASSDTKRTWYLPVGVVVNPKKPNKLRLV
FT                 WDAAAKVGDVSFNSNLLKGPDLLTPLLAVLSRFRQYPVAVTGDIKEMFHQI
FT                 RIRKEDQQSQRFLWRENPTEMPQIYVMEVATFGSTCSPASAQFVKNLNAKE
FT                 YANQYPRAAAAIHDNHYVDDYLDSFQTIEEAVQVVEEVKFVHSMGGFELRN
FT                 MLSNSVEVLRRIEQRPGESSKDLLVTRGESTESVLGMRWIPTEDVFTYTFA
FT                 PRADLQAVLEENHVPTKREVLKVVMSLFDPLGCISFFLVHGKVLIQDTWIS
FT                 KIGWDDPIGDSSLERWKQWTGLFGQLPSLRIPRCYFREPFPRNFDQLQLHV
FT                 FVDASESAFSSVAYFRLPVGEQIQVAMVASKTKVAPINTISIPRLELKAAV
FT                 LGTRLLESIRAHHTIPIAESFLWSDSKTVLAWIQSEHRRYHKFVAVRVGEI
FT                 LLSTDVNSWRWVPSKINPADEATKWKNGPNLNSDSSRFRGPSFLQRDENSW
FT                 PKLLPATTSS"
XX
SQ   Sequence 6717 BP; 1840 A; 1640 C; 1656 G; 1579 T; 2 other;
     aaatctttaa gatatttgta cgagggtgaa agatggaagg acatcataac gtcaccggat        60
     ttaattgcaa gagatgccag cgacccgact ccgcagacga acagatggtc gcatgcgata       120
     tatgccaaga gtgggagcat ttcaactgcg ctggcgtcga cggaagcata aaggatcacc       180
     cgtatgtatg cagtatgtgc aagccgaaga aaaccggtac taaagccaaa gagtcgttga       240
     aaccgccgga gaagaatgac aagaagtcgt cgaggacatc gtcgaaaaag gcaggcacga       300
     aagcaaaccc agcgccttcc agcgcgagtt ccgctactcg gatggccatg ctggaagcgc       360
     aaatgaaact tattgaggag caggaattac agcagaagca ggatctagag gcggaagagg       420
     aattgaagaa gcgtgaaatg gaagcggccc aacggcatct agaggagaaa aggaagcttt       480
     tggatgagga aaaccgtttg cgcgagttga agctacgaga ggagaaagag atcctagaga       540
     agcgtaaagt tatgaggcag caatcgatgg aaaagaagaa cgaactttta aagcagatgt       600
     ccgaatgcag cagcaagtcc ggttcgaacg tagattcgat cgagaaagtg tcatcgtggc       660
     tggcaaaaca agaggacctt ccaccacact ccgaggcaca cgttcagcca agtatgccgt       720
     tccccacgct gacacaaaca gctgccagca catcaatgca accaccaaat gcaattagtt       780
     cgtcagttcc cggtcagatg tccgtttttg caactgtgcc gaactgttcc atgccgccgg       840
     cgagatttcc cacctttccg ccagcagttc aatccaacgt tcccatgctt cacacgccgc       900
     ctattccggc ccattcgtcg cagtctccgc tgatacccgt ttcaacagct accgtacatg       960
     tgtctcagcc ggtacgaagc gtttttccac ctctcgttca accaaccgca ttgatgtcgg      1020
     cgctgaatca gcaaccctwt ccgtcgatga tcgctccaac aggcaacgaa atcggtcaat      1080
     cgcatcctta ttcgcaagca cccgcatcgt ccgcagtccc agcagtactg gacactaacc      1140
     agttagcagc gaggcaagtc ctagggaaag atttgcccaa atttagtggt cgtccggagg      1200
     actggccact ctttatcacg agcttcgagc agtcaacgtt agcgtgcgga tattccgacg      1260
     tagaaaatct tatccgcctc aagaaatgtc ttgaaggcaa tgcgctggaa tccgtacgta      1320
     gcaagcttct tcttccctcc agtgtgccac acgtcgttca aactttgcgc actctgtacg      1380
     gcagacccga gctgctgatc cggtccttac tggaaaaaat tcaccaagtt ccgactccac      1440
     ggtacgatcg actggaaacg gtaatagaat tcggtatagc agtgcagacg ttggtggatc      1500
     accttgttgc cgcaggccag aatgtgcatc tctccaaccc tgctctcatg caggagttgg      1560
     tagaaaaatt accgggcacg atgagaatgg agtgggcagt ctataagtct cgtcttccgg      1620
     tagctactct acaatccttt ggggatttta tgtctggaat ggtgactacg gccagccaag      1680
     tttcatacga acttccttct ctcgaccgtt ccggtaaaaa cgaccgatca agagctagaa      1740
     acaaaggagt catacaaacc cattccactg gactcgtagc cgcttcaaca ccaactacct      1800
     ccgtcatcaa gatcggaaaa ccagctaaac cgtgtgcttg ttgcaaccga gaagggcata      1860
     gactggtgga atgcaatcga ttcaagtctc tgagcacaga cgaacgatgg aaactggtgg      1920
     agcagagaag cctctgccgc acttgcctta acagccacgg taaatggcca tgtcggtcat      1980
     ggaaaggttg tgaagccgaa ggttgccgtc acaaacatca cacgcttctc catggtgcga      2040
     ttgcgaattc acaatctgga atgtctgcta gccatctgtc agctgggcaa ttctgtatgt      2100
     tccggatagt cccagtggtg ttgcacggga agggccaaaa gcttttgatc ttcgccttca      2160
     tcgacgaagg ctcgtcagaa accctcatcg aagacgcagt ggccaaacag ttaggtgcac      2220
     atggaccaac cgaaccatta acgttgcatt ggacggggaa cgtctctcga gaggaatcta      2280
     attcgcagcg agtacagttg aaaattgctg cgaagaatag cgagtctatt ctcgaccttc      2340
     atcatgtacg cacagtaagc tgtcttgttc taccgtcaca gacgctgcgt tacggagaca      2400
     tggttcgacg ttttccacat ctaggcggcc ttcctattga ggattataca aatgttcaac      2460
     ccaagctgct cattgggttg aacaatctca gtttatgtgt accgagaaaa ctacgagaag      2520
     ggggaccaca cgacccggtc gccgttaagt gccatctcgg ttggagcata tacggcggag      2580
     ttcctgccag tgcgattcga agtgtggctg tgaacttcca cgctgctgct ccatcagatc      2640
     cggataaatt gctgaatgaa cagctgcgcg attatttttc catcgagaac aacatatctg      2700
     ctagcatgga agtagattcg gaggaagaca aacgtgctaa agcgctctta gagtccacca      2760
     cccgacgaat tggccagcga tttgaaacag gcttgctctg gaaaacagat gcgatagatt      2820
     ttccagacag ttacgccatg gcgctacgcc gcctgctttc gctagaacgc aagcttcgcc      2880
     aggacccaga gcttggtgag agggtagtac agcagatacg cgactacgaa cagaagggat      2940
     atgcgcgtaa agttacagaa caggaattgg cgtccagcga taccaagcga acctggtatc      3000
     ttcctgtagg ggtcgttgtc aaccccaaaa aacccaacaa gcttcggtta gtatgggatg      3060
     cagcggcgaa agtcggcgat gtgtccttca actctaatct cctcaaagga cccgatctgt      3120
     tgacaccgct gctggccgtg ctctctcgct ttcggcagta tccagtggca gtcacgggtg      3180
     atataaaaga gatgttccac cagatcagga tacggaagga agatcagcaa tcccaacgct      3240
     tcctttggag ggaaaatcca accgaaatgc cacagatcta cgttatggaa gtggccacgt      3300
     ttggttcaac gtgctctcca gcttcggcgc agttcgttaa gaacctcaac gctaaagaat      3360
     acgcgaacca gtatcctcgg gccgcggcgg ctatccatga taaccactac gtggatgatt      3420
     acttggacag ttttcaaaca attgaagaag ctgtccaggt agttgaggaa gttaagttcg      3480
     tccactcgat gggcggtttt gaacttcgca acatgctttc caattctgtc gaagtactgc      3540
     gaaggattga acagcgccca ggagaaagtt ccaaagacct gttggtaaca cgcggcgaat      3600
     ctacggagtc tgtacttgga atgcgatgga taccgacgga agatgtgttc acctacacgt      3660
     ttgcccctcg cgctgatcta caagcggtcc tagaagagaa tcacgtaccg acaaagcggg      3720
     aggtcctgaa agtggtgatg agcttgttcg atccgcttgg ctgcatctcg tttttcttgg      3780
     tccatggaaa ggtgctcatc caagatactt ggatctctaa gattggctgg gacgacccaa      3840
     ttggtgatag cagtttggaa cgatggaaac aatggactgg gctctttggt cagctacctt      3900
     cgctgagaat tcctcggtgc tattttcgtg aaccctttcc aagaaacttc gatcaactac      3960
     agctacatgt attcgttgac gccagcgaat ctgcgttttc tagtgtagca tactttcggc      4020
     ttccagtagg ggagcagatc caggtagcga tggtggcttc caagactaaa gtagccccta      4080
     tcaacaccat ttccattccg aggctggaac tgaaagctgc tgttctcgga actcgtcttc      4140
     tggaatctat aagagcacat cacactattc caattgcaga atctttcttg tggagcgatt      4200
     ccaagacagt acttgcttgg atccaatcgg aacatcgtcg ctaccacaag ttcgtggcgg      4260
     ttcgcgtggg ggagatactg ctttctaccg acgtaaacag ctggagatgg gtaccgtcta      4320
     aaattaatcc ggcagacgaa gccaccaaat ggaaaaatgg acccaatctg aactcggaca      4380
     gttcgcggtt tcgtggtcct agtttcctgc agcgagatga aaattcctgg ccgaaactac      4440
     taccggctac cacttcatcg tgatttaaga aattacattt atatacaatt taaagtagaa      4500
     taccattcgt cacgtactta tatttcgaaa atctaatatg acgctataac taacactgta      4560
     tattttgaaa atccattcga gtcgttctgt cacctgaaca ccttcacctg cgtatcgatg      4620
     ttgaagaaac gttgtatgag cactatgttg ctaatagtag cgcatcattt ttaagattgt      4680
     ttaaattcaa aaatctaaaa agtttgaaac taaataaatt ttgccaaatt tagtaggttt      4740
     gactgttcca aggattcatc actcgagttt cacgatatga ttccgaatcg tgtgatagac      4800
     tgagagattc gccgtgctgt ttcaaccaat aaaaccttaa ttgcataaga tctcattgca      4860
     cgatggataa tctcgctaac ggtaccacaa tgaaactgtc gtcgaaaaac tctacgtaaa      4920
     atgaaaattt tcggtgtttc tacttgttga tcacgtcaaa cagaaacacg gtctaaatta      4980
     ggttttcaga aggttgtgca aaaaacttaa tatcaacttt tctttcaaaa aaacaattcg      5040
     tgaaaattgc atgttctgga attcatcagt gaagccggtc gctcggtaca gagcttggcc      5100
     accacccaag aagaattacg gtctgtccat ctgcatcggg tttcgttttc agtcgtggat      5160
     ccttcacgat tcagcaagtg gaacaggatg ctaaggacga ctgcattcgt gttgcgatac      5220
     gtcgacaact taaaacgccg gatagaacgt cgtcaaccaa tcagtggaat actccaccaa      5280
     gaagaattgg cgaaggcaga acgtttcctt tggaaaactg cacaggctga ggcatttcct      5340
     gaggagatcg ccgcactcaa gacaacccaa ggtgcgccgg aagcacggca ctgcgctgtt      5400
     tcgaaatcaa gccgtatcta caagcgttgg ccctttctag acgaggaagg agttctacga      5460
     acgcgaggaa gaataggcgc ggcccccttt gttcagtatg aggcaaaata ccctgcgatt      5520
     ctgcccgaga aacatccgat tacggctttg ctagtcgaat cgttccattg tcgattccgc      5580
     catgcgaaca gagaaactat caccaatgaa atgagacaac gtttcgacat cccaaggctc      5640
     cgagttttgg taagtcgggt aatgcgagat tgtacctggt gccgtgtaac gaaagcagtt      5700
     cccattcaac cggtaatggg accaatgccg gaggctcgcc tgagatcctt tgtacgacca      5760
     ttcacacatg tgggtctaga ttactttggt ccggtcttcg ttaaggtcgg taggagtcag      5820
     gcaaagcggt gggtggcact tttcacctgc cttaccatca gggcagttca ccttgaggtt      5880
     gtccatagcc tcagcaccgt atcgtgtatc atggctattc gaagatttgt ttctcgacgg      5940
     ggcaccccgg cagaattcta caccgataac ggtacctgtt ttcagggcgc aagcaaggaa      6000
     ctggctcggg aaatccaatc ccgtaatgaa gcaatcgcac ttacgtttac cagcgcccac      6060
     acaaagtggc attttatccc accttcggca ccccacatgg gcggggcgtg ggaacgcctt      6120
     gtgcgatcag taaaggcagc aattggaacc atattagatg cacctcgtcg tccggatgac      6180
     gaaactttag agacaattct ctttgaggcg gaagccatgg ttaactgtag gccattgacc      6240
     tacatgcctc tggagtcagc cgacgaggaa tcactaactc caaaccattt cctcctcgga      6300
     agctctaatg gagtaaaaat ttcgccgacg gaaccagtac cggaacatgc aacgttgagg      6360
     aatagttgga aacttgccca acatatcacc gatcaattct ggcgcaggtg gatcaaggag      6420
     ttcctacccg tgattgcaag aaggtctaaa tggtacgagg aagcaaggga cctacaagtt      6480
     ggtgacttag tcctggccgt aaatggcaac ctgagaaacc agtggattcg tggccgtgtc      6540
     atccaggtct ttcctggaag agatggcaga gtccgacaag ctctcgtgaa gacagckaca      6600
     ggagtattca gaagggcagc cgttaaacta gcggttcttg acgttgaaga gaagtgtaaa      6660
     cctgacgacg aactctcgga gaccccagat cctcgccatg gtttacgggt gggggta         6717
//
ID   BEL-637_AA-LTR repbase;    DNA;    INV; 549 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-637_AA_;
KW   Pao_Bel_Ele193; BEL-637_AA-I; BEL-637_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-549
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 549 BP; 195 A; 108 C; 88 G; 158 T; 0 other;
     tgtaacgaca agacccatca ctctggcgac actgccaccg aacaacagat ccacttttca        60
     tctgtacacg attgacggtt gatgactagc agaatcaccg tagagataca aaagagaagt       120
     gtatcgagca agaatatcgt gcgcaattga agtgagcaaa attatttgat aacgtaaagt       180
     gaatttgata acctaaatag aattcaataa ttatatatct actatttaca gttcttaaac       240
     ctatcttacg gtaaaactta aacctagctt gcattattca aacaaattgt ttccatataa       300
     acgaagtgag tacgatgaac tacatgcaaa cttgtttaga agctaagata ttgtatttac       360
     agaagtcaac tgaaattagt ctgtggacgt tagatacgac ccttctaaat ttcgaacagt       420
     acaccaaata tgtaagcctt cttgagttat atgcaatccc tatgactaaa tacaatttat       480
     ttttagctta aagcgcacaa taccacaacc tcgtgtttgc tactgagact tggtgaatct       540
     aaccccaca                                                               549
//
ID   BEL-638_AA-I repbase;    DNA;    INV; 6011 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-638_AA_;
KW   BEL-638_AA-LTR; Pao_Bel_Ele78; BEL-638_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6011
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5016-5606] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           489..5969
FT                 /product="BEL-638_AA-I_1p"
FT                 /translation="MSKMSMTRTPIVTRSGKKKSSALEDTVCEDKTTGGED
FT                 SVNGNATPVKASNQNSDQVSISEQKKNEKNKEAMKKMAAEYKVLKNQMSAL
FT                 KRKLVRVKAAMEADTDDPNQNLDCKQFLQLQLKVVESVNDDYNTHQQRAHG
FT                 LDIGDDDRDELETLCIDFEELYGELYIVLNKLLETSSKKDVISVQLPASPT
FT                 ANMSQLPPLKVPLPTFDGSYENWYAFKSMFETIMARYSSESPAIKLYHLRN
FT                 SLVGKASGIIDQEVINNNDYDAAWATLTERFEDRRLIIDKHIDALFDLPKL
FT                 TDENATGMRKLLDTCTKNVDALKNLGLPVSGLGETMLVNRIALKLDHETRK
FT                 AWELEQVSTTLPTYESTLDFLRERCRVLEKIRPLSRPPVKTPSKPPLRSAV
FT                 GSQVRASSLVTTTEICPQCSGSHELWKCDVFKKASIADRYDTLRRVGACFN
FT                 CLQKGHRTTDCSSKNSCKKCNKRHHTTLHPADRRQRKAEDSTPETPQPRPE
FT                 KKPTPTPSTQQIAETNDTEVQTALCTHSKGEGKQVLLSTAVVLVYGKADVY
FT                 PCRVLLDSGSHSNFVSEHFATLLSVKKDSANVSICGLNDINTTVRLKIHTK
FT                 IKSRISDFTACLDFFVVPRITGHLPPSRVNCSNITIPNDIQLADPNFSIPD
FT                 RVDMLLGAEVFFEMLKSGRMRIPNTSAVLQDTQFGWVLSGPIPSKALEQQQ
FT                 SFFITAEENLDEIVRNFWQIESCCEPEVKTGSDDEICVDHFRETHQRTAEG
FT                 RYVVRLPFNDAKDQLGDSKTMAEKRFFGLERRLDKAPEVKTQYVNFLREYE
FT                 ALGHMTQIDEEEGDDFRPAYYLPHHYVLKPSSTTTRLRVVFDGSAPSDTGI
FT                 SINETQLVGPSVQNDLISILLNFRSYKFAFSADIPKMYRQVEVHEDDVRYQ
FT                 RILWRERQDQPIRIYDLRTVTYGLASSPFLATMALRQLAEDEKDKYPLAAE
FT                 AVIKSFYIDDVLTGASSLEEAIELKDQIIGLLKRGGFEAHKFCTNSEALLA
FT                 TVAEDQRESCVDITDPSVNAIMKTLGVSWSPKEDRFTFVVPDNTNQAVQLT
FT                 KRSILSQIARIFDPLGFVGPAITAAKLILRELWSMNLDWDQPVPHELAKLW
FT                 TDYRDQLHSLNNVKIDRWLYSDGVHAYELCGFADASDMAYGACLYARTLRT
FT                 DGTANMILVCSKSRILPRKKNKQKEITTPKAELLAALLLSQLTAKVLEAID
FT                 TNFNSVRLWSDSQIVLCWLQKSPDSLTVFVGNRVKQIQQLTVGYTWQYVAS
FT                 NENPADLISRGIAPSKLGNQKLWWHGPPRLASSQPFYDQPPALSEDQLPEL
FT                 RRTALVSAPEHSRLPIFDRISRYMIIQRAMAYVIRFCDYIRSSRSQLTKGL
FT                 PTVSEMQRASTLITRLVQAEVFHKEIQAMKDGKQIKLPFQNMNPFIDADDG
FT                 VLRVGGRLRNADIPYQHRHQAFLPEKHPLTINLIRYLHHTNLHLGQRSLLG
FT                 VVRQQYWPLKARNVIRKILHHCIPCFRMRPKKSTQLMGDLPDYRVKPSPVF
FT                 SHTGLDFAGPFNLRSSAISRHPTTTKGYVCVFVCMATRAIHLEAVSDLSSD
FT                 SFLAALQRFVSRRGLVQKLYSDNATNFEGANNQMRRLAELFHDEQHIRAVN
FT                 EYCAPRGIEWSFIPPRSPHFGGIWEAGVKSVKSHLKLILAENRLTFEALST
FT                 VLAQIEAILNSRPLTPASDDPNDLNAITPAHFIIGREFQAIPEPSYASIPQ
FT                 GRLSRLQFIQDMKQKFWRRWMNDYLHELQKRQRDLKVTEFKVGAMVVIIDE
FT                 NAPPLKWALARIIELHPGKDGNTRVVSLRTENGTTKRAVKKICLLPLDDEK
FT                 DDQNM"
XX
SQ   Sequence 6011 BP; 1684 A; 1432 C; 1473 G; 1421 T; 1 other;
     ttttgtggtc cgatcgatcc ggattgtttc ggttttagat caattgcttc ggttgcagtt        60
     gaattcgcga aaaagtggtt tgaaacacgc atccgtcgcg cagtgaacgc tcgtagcagc       120
     ttgccgatca gtgacgccat taccgtggca aaacggctgc cctcggatta agtgtttgca       180
     gtttttggac gtgctggcgt cgatgctagc agcgttttcg aagaaaagtg cctctgggaa       240
     taagcgaatt cccacggatt aagtgctttt ccgaattgat ttgattcgcc tagtgatacg       300
     atcacaacgt gtacgcgcat gctcatgtgc cgagaattga gtgaaaacaa aatggccgct       360
     atacatgaag attgaaaaag ctatagtgtt tttcgaaacc tgcttccctc gagaggaacg       420
     caagtgattt tgttaagggc ggtattcagt gtcgtggaat tgaatccgca tatktggtgc       480
     gaatatgaat gagcaagatg agcatgacac gtacaccgat cgtgacgcga agtggaaaaa       540
     agaagagcag tgcccttgaa gacaccgtct gcgaagataa aaccactggc ggtgaagatt       600
     ccgtcaatgg aaatgctacg cccgtgaaag cgagcaacca gaacagtgac caagtgtcga       660
     ttagtgagca aaagaaaaac gaaaagaata aagaagcgat gaaaaagatg gctgctgaat       720
     acaaagtgtt gaaaaatcaa atgagtgctt taaaaagaaa gttagtgcgt gtgaaagcgg       780
     cgatggaagc tgataccgac gatcccaacc agaacctgga ttgcaaacag tttttgcagc       840
     tccagctaaa ggttgtggaa agcgtgaacg acgattacaa cacccatcaa caacgagctc       900
     acggtcttga catcggcgat gatgaccgtg acgagctaga gacgctttgc atcgatttcg       960
     aggagcttta tggtgagttg tatattgtcc ttaataaatt gttggaaacg tcttcgaaaa      1020
     aggacgtgat ttcggttcag ctacccgctt cacccactgc gaacatgtcc cagctgccac      1080
     cgttaaaagt accgttgcct acgttcgatg gatcgtacga gaactggtac gcattcaagt      1140
     cgatgtttga gaccatcatg gcccgctaca gctccgagtc accagcaata aaactctatc      1200
     acctccgtaa ttccttagtg ggcaaggctt cgggtatcat cgatcaggaa gtgataaata      1260
     acaacgatta cgacgcggct tgggcaacgt tgacagagcg tttcgaggac cgtcgactga      1320
     taattgataa gcatatcgat gcccttttcg atttgccgaa gctcaccgac gaaaacgcga      1380
     ctgggatgag aaagctactg gatacttgta cgaagaacgt cgacgccttg aaaaacctag      1440
     gtctaccagt ttcaggtctt ggggaaacga tgttggtgaa ccgcatcgct ttgaaactcg      1500
     accatgagac tcgtaaggct tgggaattgg agcaagtttc gacgactttg cccacctacg      1560
     aatcaacatt ggatttcttg cgcgagagat gtcgcgtgct tgaaaagatc cgtcccctct      1620
     ccaggccacc ggtgaaaact ccatcgaaac ccccacttcg aagtgccgta ggatcgcagg      1680
     tccgtgccag ctccttagtc actacaacgg agatttgtcc acaatgttcc gggagtcacg      1740
     agctttggaa atgtgatgtc ttcaagaagg caagcatcgc tgaccggtac gatacactcc      1800
     gacgggtcgg cgcctgcttc aattgcttgc aaaaggggca tcgcacgacg gactgttcat      1860
     cgaagaattc gtgcaaaaaa tgcaacaagc gtcaccatac aacgttgcat ccagcagacc      1920
     gacggcaaag gaaggcggag gattctacac ctgaaactcc gcaaccgagg cctgagaaga      1980
     agccaacacc gacaccatcg acacagcaaa tagcagaaac caacgatacc gaagtgcaaa      2040
     ccgccctttg tactcattcg aaaggagaag ggaaacaagt tctgctttcg acagcagtag      2100
     ttcttgttta cggaaaggct gatgtttacc catgcagagt ccttttggat tcgggttccc      2160
     attcgaactt cgtttcggaa catttcgcta ctttgttgtc tgtgaaaaag gattctgcca      2220
     acgtatcaat ctgtgggctg aatgacatca acacaacggt tcgattgaag attcatacga      2280
     agatcaaatc tcgtatcagc gatttcacgg cgtgcctcga cttctttgtc gtaccccgaa      2340
     taacaggaca tttacccccg tcgagagtga actgttccaa cattactatt ccgaacgata      2400
     ttcagctcgc agatccgaac ttcagcattc ccgaccgtgt agacatgctc ctcggtgctg      2460
     aggtattttt cgagatgttg aaatcaggcc gtatgcggat tccaaacact tctgcggttc      2520
     ttcaggacac ccaatttgga tgggtgttga gcggtcctat tccaagtaag gctttggagc      2580
     aacaacaatc gttcttcatc accgctgaag agaacctcga cgaaatcgtg cgaaatttct      2640
     ggcaaattga atcctgttgc gaacccgagg tgaaaactgg atctgatgac gagatttgcg      2700
     tcgaccattt ccgtgaaaca caccaacgta ccgccgaagg aagatacgtc gtccgccttc      2760
     cttttaacga tgcgaaggat cagctcggcg attcgaagac tatggcggag aagcggttct      2820
     tcggcctgga aaggcggctt gataaggctc cagaagtaaa aacgcaatac gttaatttcc      2880
     tgagggaata tgaagcgctt ggacatatga cacagatcga tgaggaggaa ggcgatgatt      2940
     tccgaccagc gtattatctg ccgcatcatt atgtcctgaa accaagcagc acaactactc      3000
     gacttcgtgt tgtgttcgat ggttcggctc cgagtgacac tggtattagt atcaacgaaa      3060
     cccaattggt cggcccgtcg gtgcagaacg atctgatatc gatattgcta aactttcggt      3120
     catacaagtt cgctttctct gccgacattc caaaaatgta tcggcaggtg gaggtacatg      3180
     aagacgatgt ccgttaccaa aggatactct ggcgtgaaag gcaggatcaa ccgatccgca      3240
     tttatgatct gcgaaccgta acatacggac tcgcatcttc cccatttctg gcaacgatgg      3300
     cactccggca acttgcagag gacgagaagg acaaataccc gcttgctgcc gaggcggtta      3360
     taaaatcctt ctacatcgac gacgtactta ctggagcaag ctctttggaa gaggcgattg      3420
     aactaaagga tcaaatcatt ggactgctaa agcgaggagg tttcgaggcg cacaaattct      3480
     gtacgaattc cgaagcattg ttggctacag ttgctgaaga tcaacgggag agctgtgtag      3540
     acataacaga tccctctgta aacgcgataa tgaaaacatt gggcgtctcg tggagtccca      3600
     aagaagacag gttcacgttc gtcgtgccag ataacacgaa ccaagccgtg caactgacca      3660
     aacgatcgat tctcagccaa attgcaagaa ttttcgatcc gttaggattc gtaggacccg      3720
     caatcaccgc tgcgaagctc attttgcggg aactctggag tatgaatttg gattgggacc      3780
     agccggttcc gcatgaattg gcgaagttgt ggacagatta tcgtgaccaa ctacacagct      3840
     tgaacaacgt gaagattgac cgatggctct atagtgacgg agtacatgcg tacgaacttt      3900
     gcggctttgc tgatgcgtca gacatggcat atggcgcctg tctgtatgct cgcacattac      3960
     gtaccgatgg aacagcaaac atgattcttg tatgcagcaa atcacggatt cttccacgaa      4020
     agaagaacaa acagaaagag atcacaacac cgaaggccga actgttagca gcgttattgc      4080
     tttcgcaact cactgcaaag gtgttggaag ctatcgacac taatttcaat tctgttagac      4140
     tgtggtcgga ttcacagata gttctttgtt ggctgcaaaa atctccagat tcactgactg      4200
     tgtttgtggg aaaccgagtc aaacagatcc aacaattgac tgtcggttac acttggcaat      4260
     atgttgcctc gaatgaaaat cccgcggatt tgatttcccg tggcatagca ccctcgaaac      4320
     tgggaaacca gaagctttgg tggcacgggc ctccaagatt ggccagctca cagccattct      4380
     atgatcaacc accagcactt tcggaagatc aactgccaga gctcagaagg acagcacttg      4440
     tttctgcacc cgaacattcg agattaccga tattcgatcg aatcagtcgg tatatgatta      4500
     tacagcgagc aatggcatat gtgattcgtt tttgtgatta catcagaagc agtcgaagcc      4560
     aattgaccaa aggattaccc acggtgtccg aaatgcagcg agcatccacc ttgattacgc      4620
     gcttggtgca ggccgaagtg ttccacaaag agatacaggc gatgaaggac ggaaagcaaa      4680
     tcaagctacc gttccagaat atgaatccgt tcattgatgc ggatgacgga gtactacgcg      4740
     tcggcggacg cttgaggaat gcagacatac cctatcaaca tcgtcatcaa gcattccttc      4800
     cagagaaaca tccactcacg atcaatctga tacgttactt gcaccacacc aatttacatc      4860
     ttggccaacg aagtctactt ggagttgtcc ggcagcagta ttggccgctc aaggcaagga      4920
     acgtcattag aaagatattg caccactgca ttccgtgttt tcgcatgagg cccaagaaat      4980
     ccacgcagct aatgggtgat cttccagatt atcgcgtcaa accatcgccg gtgttctcgc      5040
     ataccggtct ggacttcgca ggaccgttca atcttcgatc gagcgcaatt tccagacacc      5100
     caacaaccac caagggatat gtttgtgtat tcgtgtgcat ggccactcgt gcaatacacc      5160
     tcgaagctgt ttcggatctg agctcagact ccttcttagc cgcactccag cgatttgtta      5220
     gtcggcgagg gcttgtgcag aagctatatt ccgacaacgc aaccaatttt gaaggagcca      5280
     acaatcaaat gcgtcgctta gctgagctat tccacgacga gcagcacatt cgtgctgtga      5340
     atgaatactg cgcaccaagg ggaattgaat ggtcattcat tcctccacga agcccgcatt      5400
     tcggtggaat ctgggaggcg ggagttaaat cggtaaaatc gcatctgaag ttaatccttg      5460
     ccgaaaatcg tctgacgttt gaagcactgt caactgtcct tgcacagatt gaagcaattc      5520
     tgaactcccg tcctctcaca cctgcttccg acgaccccaa tgatttgaac gccattactc      5580
     cggcacattt cattatcggg agggaattcc aagccatacc ggaaccctcg tacgccagta      5640
     ttccacaagg tagattgtca cgtttgcaat tcatccaaga catgaagcag aagttctgga      5700
     gaaggtggat gaatgattat ctgcacgaac tccagaaacg ccagcgagat ctcaaggtta      5760
     ccgaattcaa ggttggagcc atggtagtca tcatcgacga gaacgcaccg ccgctgaagt      5820
     gggctcttgc ccgcataatt gaactgcatc caggcaagga cgggaacaca cgtgtagtga      5880
     gcttgcggac tgagaacggc acaactaagc gagccgtgaa gaagatctgc ttgctacctc      5940
     tagacgacga gaaagatgat cagaatatgt agttggaatc ttgaaatttc caatttcgac      6000
     gcccgggaag a                                                           6011
//
ID   BEL-638_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-638_AA_;
KW   Pao_Bel_Ele78; BEL-638_AA-I; BEL-638_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-230
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 230 BP; 82 A; 56 C; 37 G; 55 T; 0 other;
     tgttggtctg gcaacacgga caacacgcca tcatcatgaa cacgactaga aataaacaga        60
     aaaacattac atactttgtc aaacacccat cacacaaaca cacatgtatt cttcaaacat       120
     ttgttcaaag taaaattgac tgttgtacta aacagacgcg ttcgagaatc gttcctccga       180
     aaaaaccgaa acttgttcgt tacagtccat ttccgcgagt gtcgaggaca                  230
//
ID   BEL-639_AA-I repbase;    DNA;    INV; 6108 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-639_AA_;
KW   BEL-639_AA-LTR; Pao_Bel_Ele103; BEL-639_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6108
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5157-5717] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           491..1624
FT                 /product="BEL-639_AA-I_1p"
FT                 /translation="MLAKPSRKGRVEQREQLKEPFDQAAKSLKASSVKSAT
FT                 SRKSSRVQLELQLRKLDAERTLLEDKRKLIEQQYSVLQELAELEDRVEDVE
FT                 DGDQVDGDSKVEGWLRDGLNSDYEAESTDSSEEYPGTEDSDDEDVGNSSED
FT                 DIQEDPRSNASHFNPKGRSTPRIDQTKSQRRNVTHSNQLACSLTRNQLAAR
FT                 QVVAKDLPTFTGNAEEWPIFFSTFESTTRMCGYTNDENMIRLRNCLRGEAY
FT                 AAVKSFLLHPSTVDRAIGALKLRFGQPRFVIHSLKEKILAMPPLRPDSINK
FT                 MIDFALAVQNLEATIDACGQKELMRDASLLGDLVGKLPASAKLEWARHTRC
FT                 LRKVNLSAFSKWIYDMAEDACLVAEPRKNQESPQS"
FT   CDS           2244..6107
FT                 /product="BEL-639_AA-I_2p"
FT                 /translation="MDEELAKELNLSGERHPLCLKWTGGLHRTEDGSRSVQ
FT                 IEISGIKGKRYHFEDIRTVSELQLPCQTLDVQQLQSEYPYLRGVPVQSYRE
FT                 VRPRLLIGIQHAVATLVRKSREGKPGQPIAIKTNLGWTIYGGAPANQSMNM
FT                 VHYTNHVSFCDHEIENTNANMDRAMKEYFSLESLGIMSPAKHVRSQEDERA
FT                 MSLLHKLTHFNGERYETGLLWRKDNEQLPNNKAMALKRFNHLERRMEKDPE
FT                 LARVVKEKLADYVSKNYVRKLTSEELAEIHERAWYLPTFPVINPNKPGKIR
FT                 IVWDAAATTNGVSLNSALLAGPDLLEPLIRVLYRFRQYRFAICGDIREMFH
FT                 QVAIRNEDQHSQRFFLRDDEGQKEPSTYVMQVMTFGASCSPATAQFVKNMN
FT                 ADRFSNTHPSAARAIVRCTYVDDMLSSAETEQEAIELAKSVWFIHNEGGFE
FT                 IRNWMSNSSTVLAAIRGNSNVEKSLDLTSTLATEKVLGMWWCTKADCFTYK
FT                 INWDRLGEDLLAGKRCPTKREILRTMMTIYDPLGLISHYLMYLKVLLQEIW
FT                 RTGVGWDEKVTQESYDKWQTWLKLLPEIELLQIPRCYRLQTSTDEYTEIQL
FT                 HTFVDASENGMAAVVYLRFAEAGTVECSLVTAKTRVAPLKYLTIPRLELQA
FT                 ALIGARLAHSVIQALDITVARCVFWSDSRNALSWIRADHRRYSQFVAARVS
FT                 EILDLTNAADWKWVPTKWNVADEGTKWQRRPSFTSESCWYKGPEFLLHPEN
FT                 EWPATPVKFEESCEELRANIHVHYEATKLEFPVDKFSEWKRLLHTTAYMLR
FT                 FTRNARPKKFSRIGGCITSEEIRDAEVFHFRTAQANKFSEELSIMRREESK
FT                 AVIPKRSPLFKLSPFIDEQGVLRMRGRTAACPYLLPDAINPIILPREHPVT
FT                 HLIVRSYHVKFHHQNHEAVINEVRQKFCISRLRRVYAKVRLDCQRCKLRDT
FT                 RPRPPAMADLPPCRLTAFIRPFTHTGVDYFGPMEVCIGRRVEKRWGVLLTC
FT                 LSIRAVHIELASSLTTNSCIMALRNFIARRGTPAVFYSDRGTNFIGSEREL
FT                 KQTLKTVDQNRMAQEFVSSNTSWSFNPPAAPHMGGSWERLVQSVKRTLSEL
FT                 KPCPRPNDEELRNALIEVEGILNARPLTHVPIEDEAAPALTPNHWLLGSSD
FT                 GLKPWSLLDNDSIALRRGWHQSQVLANHFWERWLREYLPEITRRSKWYQKV
FT                 PPIQEGEIVLIADPNLPRNCWPKGRVIGTVNRDGQVRKVTIQTMRGIYERP
FT                 AVNVAVLDVKGPEELANSEAESANWGG"
XX
SQ   Sequence 6108 BP; 1735 A; 1447 C; 1612 G; 1312 T; 2 other;
     cgctagtaac aaattttaaa ttcgtttacc gagttgaacg atgtcggcac cggctggagc        60
     ggtaggcatt agcctgccga tcaaggttta atcaagagct ctgcttttca atcaaatgac       120
     gcgcatgaag acccccctct gaacccaacg gagaaatcaa ataaaaaccc tcttctcaaa       180
     cctcaccaaa aagtaccctc tgtcaaaagc aaatcgtcaa aaaatcggga taaatcatcg       240
     gcggtcggtc atagttgtga aacgtgtagg tcagcggaca acagccgtat ggtgcagtgc       300
     gatgattgtg acggttggca tcattacatc tgcgtgggtg tcgatgatcg aatagtgaag       360
     aaaccttggc ggtgcgtgat gtgtgaggag gtttggacga aacggaagaa tatcaagcat       420
     acgaaagtgg aagagggaaa gaagaaaccg aaagccactg gaaaaaccaa ccaggaaggt       480
     ggaccgaagg atgttggcaa agccaagcag aaaaggacga gtggagcagc gggaacaact       540
     gaaggaaccg tttgaccagg cggcgaaaag cctcaaagcg tcatcagtta agtcggcaac       600
     ttcgcgtaaa tcttcaagag tccaactcga actgcagctg cgcaaactcg atgctgaacg       660
     gaccttgctg gaagataaac gcaaattgat cgagcaacag tacagtgtcc tgcaagagct       720
     tgcagaactt gaagatcgcg ttgaggatgt ggaagatggt gaccaagtag acggggattc       780
     caaagtagag ggttggctgc gcgacggact caactcggac tacgaggctg agagtactga       840
     ctcaagcgaa gagtacccag gtactgaaga ttcggatgac gaagacgtcg gtaattcatc       900
     agaggatgac attcaagaag atccacgtag caacgcatcg cacttcaacc cgaaaggacg       960
     ctccacgcca aggattgacc aaacgaaatc gcagaggaga aatgttacgc acagcaacca      1020
     gttagcctgt agcctgactc gtaaccaact agcagctcgt caagtcgtgg cgaaagatct      1080
     gcccacattc accggcaatg cggaagagtg gccgattttc ttttccacct ttgaaagcac      1140
     gacacgaatg tgtggataca ctaatgatga aaatatgatt cgattgagga attgcttgcg      1200
     tggagaagcg tacgccgcgg tgaagagctt tctgcttcac ccgtcaacgg tagacagagc      1260
     aataggtgct ctcaagctga gattcggtca accacggttt gtcattcatt cgcttaagga      1320
     aaagatactc gccatgccac cgctaagacc cgattcaatc aacaaaatga tcgactttgc      1380
     gctggcagta cagaatcttg aagctacaat tgatgcgtgt ggacaaaagg agcttatgcg      1440
     agatgcgtcg ttgctaggcg acttggttgg aaagcttccg gcctcggcga agttggaatg      1500
     ggcaagacat acccgatgct tgcgaaaggt caacctgtcg gccttcagca agtggattta      1560
     cgatatggca gaagatgctt gtttggttgc cgaaccacgc aaaaatcaag aatcacccca      1620
     gagtcakgag ccacgtaaaa agtccaaggc gtttctgaac acccacaccg atcagccgaa      1680
     ctacaggaaa gaggaacggc acgcagctgg tagcaacagt gcttctaaac cgacgggtgc      1740
     atataagaaa accccgggcc ggcggggcgc ggcggcgccg gcgcgggggc gcccgcgccc      1800
     cgccgggggc cggcgccggg cgcgccggcg ggcgcggcgc ggcggcgggc cggccacaat      1860
     ctcggccatg tattgtctgc aaaggaggtt gcgcttctct tgcaaagtgc ggaaggtttt      1920
     tggatctctc ttatgacgga aggtgggcaa cgattcgcga agcaagagtc tgtcggaagt      1980
     gtctgacgca acacaaagga ggatgcgaat caaagcagtg tggtgtgaac ggatgtggct      2040
     ataaacatca tcccttgctg cacaaggagt tgaatgtaga atcatcagcg attgagaggc      2100
     cacagcatga agagcagtcg tgtaacactc atcagtctgg ctcaagttcg atccttttcc      2160
     gttatattcc agtcgtggtg tacggatgcg gaattgtagt tcactgctac gcctttctag      2220
     atgacggatc gtcgaaaacg cttatggacg aagagcttgc aaaagaattg aacctatctg      2280
     gagaacgtca tccactgtgc ctcaaatgga ctggcggctt gcatcgaacg gaagacggtt      2340
     cgcgtagcgt acaaatagaa atctccggta taaagggaaa gcggtaccat ttcgaggata      2400
     tccgaactgt ttcagaactt cagttgccgt gccaaacgct cgacgtgcaa caactacaat      2460
     ctgaataccc ctacctaaga ggagttcctg tacaatcgta tcgagaggta cggccgcgac      2520
     ttctcatcgg aatccagcac gctgttgcta cgctggtgag gaagagtcgt gaaggaaaac      2580
     cgggtcaacc gatcgccatt aaaaccaacc ttggatggac aatctacggc ggggcacctg      2640
     ctaatcaatc tatgaacatg gtgcactata cgaaccacgt ttccttctgc gaccatgaga      2700
     ttgaaaacac gaatgcgaac atggatcgag caatgaagga gtatttctcc ctcgaaagtc      2760
     ttggcatcat gtcaccggct aaacatgtac gttcccaaga agatgaacgc gctatgagtc      2820
     tgttacataa gctcacccat ttcaacggag aaaggtatga aaccggtttg ctatggagaa      2880
     aagacaacga gcaattacca aacaacaaag ctatggcgtt gaaacgtttc aatcatcttg      2940
     aacgccgcat ggaaaaggat cccgagctag cgcgagtagt gaaagagaag ctggcagatt      3000
     acgtttcaaa gaactacgtc cgtaagctaa ccagcgaaga gcttgcagag atccacgaac      3060
     gcgcttggta tttgcccact tttccggtta tcaatccaaa taaaccggga aagatwagaa      3120
     ttgtctggga tgccgcagct acaacgaatg gagtatcact aaactctgcg cttctagccg      3180
     ggccagatct attggagccg ctgatacgcg ttctctacag atttcgacaa taccgtttcg      3240
     cgatatgtgg tgatatacgc gaaatgtttc accaggtcgc aatacgcaac gaagatcaac      3300
     atagtcaacg atttttcctg agagacgacg aaggacaaaa ggagcccagc acttacgtaa      3360
     tgcaggtgat gacgtttggt gcgtcctgct ccccggcaac tgctcagttc gtaaagaaca      3420
     tgaacgcaga tcgtttcagc aacacccatc catctgcagc aagggcaatc gtgcggtgta      3480
     catacgtcga tgacatgctg agcagcgccg aaacagagca ggaagcgata gagcttgcaa      3540
     aatctgtatg gtttattcac aatgaaggtg gcttcgaaat ccgtaattgg atgtccaact      3600
     cgtcgacagt tctcgcagcc attcgcggaa actcaaatgt tgaaaaaagc ctcgacttaa      3660
     cgtctaccct tgctaccgaa aaggtcctcg gtatgtggtg gtgcacgaag gctgactgct      3720
     tcacctacaa gatcaattgg gacagacttg gcgaagacct gttggcaggc aagcgctgcc      3780
     ccacaaagcg agaaattttg cgtaccatga tgaccatata cgatccgtta ggtttgatat      3840
     ctcactatct gatgtacctg aaggtactac tacaggaaat ctggcgaaca ggtgtaggct      3900
     gggacgaaaa ggtgactcag gaaagttatg acaaatggca gacatggctg aagcttcttc      3960
     cggaaatcga gcttttgcaa attccacgtt gctatcggct gcagacatca actgatgagt      4020
     atacggagat tcaactgcat accttcgttg acgccagtga aaatggtatg gcagctgtag      4080
     tgtacctccg atttgcggaa gcaggaaccg ttgaatgctc gttggttaca gcgaaaacac      4140
     gagtagctcc gctcaaatac cttaccatcc cgagactgga gcttcaagca gcgctcatcg      4200
     gcgctaggct ggcgcactcc gtcatccagg cactagacat tacagtcgcc cgatgcgtct      4260
     tctggtctga ctctagaaac gccctgtcgt ggatacgcgc agatcaccgt agatacagtc      4320
     aatttgttgc cgctagggtc agtgaaatct tggatctgac aaatgctgct gactggaaat      4380
     gggttccaac gaaatggaat gtggctgatg aaggcaccaa atggcagcga cgcccctcat      4440
     ttacaagtga gagctgttgg tataaaggcc ctgaattcct gttacatcca gaaaatgagt      4500
     ggccggctac acctgtaaaa ttcgaggaat cctgtgaaga gttacgagcc aacatccatg      4560
     tgcactacga agcaacgaag ctagagtttc cagtagacaa attcagtgaa tggaaaagat      4620
     tgcttcatac aaccgcctac atgttgcgat tcaccagaaa cgctcggccg aaaaagtttt      4680
     cccgaattgg cggctgcatc acaagcgaag aaattcgcga cgctgaagtc ttccatttcc      4740
     gtaccgcaca agccaataaa ttctcagaag agctgtcaat catgcgccgg gaagagagca      4800
     aagcagtaat cccaaaacga agtccgctgt tcaaactaag ccctttcatt gatgaacagg      4860
     gcgtgctgcg tatgagaggc cgaaccgcag cttgcccata ccttttacca gacgccatta      4920
     atcccataat tcttcctcgt gagcatccgg taacgcatct cattgttcga agctatcatg      4980
     tcaagtttca tcaccagaac catgaagcgg tcataaacga ggttcggcag aaattctgca      5040
     tcagtcggct acgtcgggtg tacgctaaag tcagactcga ctgtcaacgt tgtaagctga      5100
     gagatactcg accccgccct ccggcaatgg cagatctacc accttgcagg cttaccgcgt      5160
     ttatccgccc gttcactcac actggggtgg actattttgg cccgatggaa gtatgcatag      5220
     ggagaagggt tgagaagagg tggggggttc ttctaacatg tctttcaata cgcgctgtcc      5280
     atattgaatt agctagctca ttaaccacta actcgtgcat aatggcgtta cgaaacttta      5340
     tcgctcggcg aggaactcca gctgtattct acagcgacag gggtacaaat tttattggct      5400
     ctgaacgtga gttgaagcag acgttgaaga ctgtagacca aaacagaatg gcacaggagt      5460
     tcgtaagctc caatacatca tggagtttca atccgccagc tgctccccat atggggggaa      5520
     gttgggaacg actggtgcag tccgttaagc ggactttgtc ggagctcaaa ccatgtccgc      5580
     ggccaaacga cgaggaatta aggaacgctt tgattgaggt cgaaggtatt ttgaacgcac      5640
     ggccactcac acacgtgcct atcgaagatg aagcagcccc ggcgctcact ccgaatcact      5700
     ggctattggg aagctccgat gggttgaaac cgtggtctct actggacaat gactcgattg      5760
     cgttaagacg aggctggcat caatctcaag tactcgcaaa ccacttctgg gaaagatggc      5820
     ttcgagagta tctaccggag ataactagac gcagtaaatg gtatcagaag gtcccaccga      5880
     tacaggaggg tgaaattgtg ctgatcgcag atccgaatct cccaaggaat tgctggccaa      5940
     agggtcgtgt cataggtacg gtcaaccggg acggacaggt acgtaaggtg acgatccaga      6000
     ctatgagagg aatttacgag aggccagctg tgaacgttgc ggtacttgac gtcaagggcc      6060
     cagaagagtt ggcaaactca gaggcggagt ctgcaaactg ggggggag                   6108
//
ID   BEL-639_AA-LTR repbase;    DNA;    INV; 661 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-639_AA_;
KW   Pao_Bel_Ele103; BEL-639_AA-I; BEL-639_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-661
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 661 BP; 234 A; 121 C; 119 G; 187 T; 0 other;
     tgtcatcgaa acccctcggt gtcgatagca cctcatcaac agctaccttg cggaagactg        60
     tcgcggtgac agcggttgac agatcgaacc gatacaatga actgtcaggt taatgacaag       120
     gcaaaattac aatatagcgt gtgcaccagt aacatataat actccagatt aattgtcttg       180
     aaattcttat aaattatatt actatgaatt tatctctcaa gtgaattaag gtagtatact       240
     tgtgtgaact agaactatac ttgtgtcgac ttataactaa acatttattt aacttagaac       300
     tacataacgt aaaatagcct aatagtacgg agaggacagt cgatcataag tacgtttgat       360
     tgatagcagg tgagaaattg atattctatt tgaagttata atttctcata ttcaccaacc       420
     gtaattacat aggtctcttg ataaaacctt aatcagcagg ctaggtccga cgaagccgag       480
     gaaaaaaaaa gactaaatgc actaaacgta agaagttata caccttaaaa cttaacctaa       540
     aacatgccct aaaatctaat ttacatgtaa acaggaattt aaaacgggcc tgaacttcgg       600
     acgaataaag gtcgttaagg atttggaacg catacatcgt ctttttcttg ttacagcggc       660
     a                                                                       661
//
ID   BEL-63_AA-I repbase;    DNA;    INV; 5997 BP.
XX
AC   AAGE02019161;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_AA_;
KW   BEL-63_AA-LTR; BEL-63_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5997
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019161; Positions   54637   60633.
XX
CC   Positions [5032-5604] - Integrase core
CC   'ATAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..5997
FT                 /product="BEL-63_AA-I_1p"
FT                 /translation="MAIKKKSLEEKVKLIREQSFRGSSRSSNISQSASEVS
FT                 EKVTNWLEKTDTHADQNQDNHLGLSVLSNPALVNSFEKLGLSNQEGEGRTA
FT                 FFGHPSGFHQNLNDFVNEVRSSQGLNAETSRQNVVSGNTRREQERDCSGIN
FT                 VPEQTCLSLGRQNAENEQLYAYDHQAGPTNRQLGARQVMGKDLPVFSGNPE
FT                 EWPIWVSNFERSTMTCGFSQDENLIRLQRCLKGPALEMVRGRLLTPACVPH
FT                 VIKTLQLRYGRPETLIRALTEKIRNLPSPKMDNLESIIDFGMAVDNLVEHL
FT                 KTAKQFAHMTNPSLLHDLVGKLPVEYRMKWAAFKGARADADLRIFGTFMNS
FT                 IVELAFDVADDHPMSSYKSQQKPKERAYIQTHSEPTSAIEIGVDGRQEKMR
FT                 KRMCVTCGKEDHRIHECEKFRLLSVDERLKIVNQNSLCRTCLNQHGRWPCR
FT                 TWQGCGISGCRLRHHTLLHPSAQSISVAVSTSHLDQKQSSNGPLFRILPVT
FT                 LYGPSGKIDIFAFVDEGSQITLLEEEIASQLGLYGPCEPLQLLWTGNITRN
FT                 ESKSRRLLMDITGAQLDQKFKLTDARTVDKLMLPTQTLCYSSLETRYPHLR
FT                 GLPIKDYEKVAPKLLIGLDNLKLTIPLKIREGDWGHPMAAKCRLGWSIYGC
FT                 SPNGEGPITCGFHVGGWTNQDQELNQLVRNYVALDNAGIISPISQLESDED
FT                 RRAREILEATTRRISTGFETGLLWKTDYVQLPNSYGMAYRRLCGLERKLSM
FT                 DEPLYECVRTTIRDYVEKQYAHEATEDELATTSPEKCWYLPLGVVVNPRKN
FT                 KVRLIMDARATVNGVSFNSSLLKGPDMLVSLPSVLSHFRLFQYALAADIKE
FT                 MFHRIKIREEDRQFQRFLWRDRPHLEPSTFVMDVAIFGSTCSPSSAQYVKN
FT                 QNAREFASEFPRAAEAITRHHYVDDYLDSFGTIEEAVTVGREVKEIHARGG
FT                 FEIRNFLSNKAELAESVGSQSTAMEKLFPAGNEEYAESVLGMSWIPSSDNF
FT                 TYSMQFRESLQNIVAEGHVPTKREVLRVAMSLFDPLGLITFYLIHGRILKQ
FT                 NIWASKINWDDVIDNELCERWRLWIGYLPQLDLLRIPRCYFAGGNQQTYST
FT                 LQIHVFVDASEAAFSSVIYFRVETVSGAKVALVSAKSKVAPLKMLSIPRLE
FT                 LQAAVLGTRLLNSVISMHNLQVTRRVLWTDSRTVLSWINSDHRKYHQFVGF
FT                 RVAEILSTTELSEWRWIPTRINVADLATKWGAGPDFSGNSVWFRGPEFLRQ
FT                 PEDMWPQQHREIDSTVEEIRPCNIHVSKPELPIDLSRFSRWERLHRTMGYV
FT                 HRFTDNIQRKRQGAPLEVGNLTQFELVKAERSLWKFAQQEYYSVEVEQLGE
FT                 NGDTVVSKSSKIFKLCPFMDKFNVLRMRGRLELSTYVPYEAKYPVILPPES
FT                 VITNLLADWFHRRYQHANRETVVNEMRQYYQIPKLRALIAKTAKNCMQCRV
FT                 CKALPRTPVMAPLPKVRLTPFVRPFTFVGLDYFGPILAKQGRSNVKRWIAL
FT                 FTCLSIRAVHMEVVHALSTESCVLAIRRFVTRRGSPAEIFSDNGTNFHGAN
FT                 NKLKKQIQERNRTLAAIFTNANTKWSFNPPGAPHMGGVWERMVRSVKVAIG
FT                 TFTEATRKPDDETLETVIIEAEGIINSRPLTYIPVESADQESLTPNHFLLG
FT                 SSNGVKQLPVLPTEYRTTLRSSWKLAQHLADGFWRRWLKEYLPVISRRSKW
FT                 FDNVRDISVGDLVLVINGEVRNQWTRGRVEKVIMGADGKVRQAWVRTAGGL
FT                 HRRPSVKLALLDVAQSCEQDLGHRSRSQEGE"
XX
SQ   Sequence 5997 BP; 1757 A; 1277 C; 1508 G; 1455 T; 0 other;
     acctttaaaa attttcaccg attcctccag catgtcggtt tccggagcga atgatccaca        60
     ggtgcagaag agctgcccgg cctgcaaccg ccccgaccac atcgaagata tggtcgcatg       120
     cgacgattgt ggcaagtggc accattatgg ttgtgcgaag gttgacgaag ccatcaaaga       180
     ccaatcatgg aagtgcgaac cttgtggact cctcccatta aacactgcat cgattacagg       240
     agccggtgca agtctggccg ttcccactgg agccatgaag aagaatgcaa agccggccgg       300
     taacaaagca ggatcccgta agtcgaaaaa gaccaacctt agtagaactg taagtgttac       360
     atcaagtgca agagcacgcc tagctttaga gttagaagtt cttaacgaac agcaacagtt       420
     agaagaatta gaactggaag aggagaagca gattagagcc aggcaaattg cacaagaaaa       480
     gatgattaaa gatcgtgagt tagagataga ggctaagaag ctagccgaag agaaggcatt       540
     tttggaaaag aagacggccg ggccgaagag ttaaaatttc gtagggatca aatggccatc       600
     aagaaaaagt ctttagagga aaaagttaag cttattcgcg agcagtcatt tcgtgggagt       660
     agtcgttcgt cgaatatcag tcaaagtgca tcggaagtga gtgaaaaagt gactaattgg       720
     ctagaaaaga cagatacaca tgccgatcaa aaccaagaca atcatttggg actgagcgtt       780
     ctgagtaatc ctgcgctggt gaattctttc gaaaagctcg gtttatcgaa tcaggaaggc       840
     gagggacgaa cggcgttttt cggccacccg tcgggattcc atcaaaatct aaacgatttc       900
     gttaatgaag tacggtcaag tcaaggattg aatgctgaaa cttcccggca gaatgttgtt       960
     tccggcaaca caagacgcga acaagaacgg gactgtagtg gtataaacgt tccggaacaa      1020
     acgtgtctgt cacttggcag acaaaatgct gaaaacgaac aattgtacgc gtatgatcat      1080
     caggcgggtc ccacaaatcg tcaacttggt gcgcgtcaag taatgggtaa agatcttccc      1140
     gtgttttctg gaaatccaga agaatggcct atttgggtga gcaacttcga aaggtctaca      1200
     atgacatgcg ggttttcaca agatgaaaat ctaattcgac tacaacgttg ccttaaggga      1260
     ccagcccttg aaatggtccg cggaaggctt ctaacaccag cttgtgtgcc acatgtaatc      1320
     aagacgttac aactgcgtta cggtcgccca gaaactttga ttcgagctct caccgagaaa      1380
     attcgaaacc tcccttcgcc gaagatggat aacttggaaa gtatcatcga cttcggtatg      1440
     gccgtggaca acctagttga gcatctgaag acagcaaaac agtttgctca tatgacaaac      1500
     ccgtcacttt tacacgactt ggtcggtaag ctacctgtcg aatatagaat gaaatgggca      1560
     gcgttcaaag gtgctcgtgc tgacgccgat ctacgaattt ttggaacgtt tatgaactcc      1620
     atcgtagagc ttgcctttga tgtagcggat gatcatccga tgagctcata caaatcgcaa      1680
     caaaaaccga aggaacgtgc ttacattcaa actcattccg aaccgactag tgcgattgaa      1740
     atcggcgtcg atggtcggca ggagaaaatg cggaagagga tgtgcgtaac atgcggaaag      1800
     gaagatcatc gaatccacga gtgcgagaaa ttcagactgt taagcgttga tgaaaggttg      1860
     aagatcgtga atcagaattc actgtgcaga acctgcttaa atcaacatgg aagatggcct      1920
     tgtcgtacat ggcaagggtg tggaatctca ggctgtagac tgcggcatca cacgctgcta      1980
     catccatcag cgcagagcat ttcagttgct gtatctacaa gtcatctaga tcaaaaacag      2040
     tcatctaacg gtcctctgtt tagaattctg ccagttacgt tatatggacc gtctggaaag      2100
     attgacattt tcgcctttgt tgatgaggga tcccaaataa cgcttctaga ggaagaaatt      2160
     gcatctcaac ttggtcttta tggaccctgt gaaccactgc agttattatg gactggaaat      2220
     attacgcgta acgaatccaa atcacgacgg cttcttatgg atattactgg agcccagttg      2280
     gatcagaaat tcaagctaac cgatgctcga acggtcgata aattgatgct cccaacacaa      2340
     acactgtgtt acagcagctt ggaaacacgt tacccccacc ttcgagggct tccgattaag      2400
     gattacgaga aggttgcgcc aaagctactc attggtcttg acaacttgaa gctcacaata      2460
     ccgttgaaga ttcgtgaagg cgattggggg catcccatgg cagccaaatg tcgtcttggt      2520
     tggagtatct atgggtgctc accgaacggt gagggaccga ttacttgtgg gtttcatgtt      2580
     ggaggatgga ccaatcaaga tcaagagtta aaccaattgg tcagaaatta tgtagctttg      2640
     gataatgctg gcataatatc gccaatatct cagttagagt cagatgaaga tcgtcgtgca      2700
     cgtgaaatac tagaagcgac cacacggaga atttctaccg gatttgaaac cggtcttctt      2760
     tggaagacgg actacgtaca gctgcccaac agttacggta tggcctatag gcggctttgt      2820
     ggcttggagc gaaagctctc gatggatgaa ccgctttacg agtgtgtgcg aacaacgata      2880
     cgagattacg tggagaaaca gtatgcacat gaagctacgg aggatgagct tgccacaaca      2940
     agcccggaga aatgttggta tctgccactt ggagtagtgg tcaatccaag gaagaataag      3000
     gttcggctga ttatggacgc gagagccaca gtaaatggtg tttcattcaa ttcttctttg      3060
     ctgaaaggac cggatatgct ggtgtcgcta ccgtcagtac taagccattt ccgtctgttt      3120
     cagtacgcct tggctgccga tatcaaggaa atgtttcatc gcatcaagat acgggaagag      3180
     gatcgacaat ttcaacgatt cctctggcga gatcgaccac atttggaacc gtcaacattt      3240
     gtaatggacg tggcaatatt tgggtccacc tgttctccaa gttcggccca atatgtaaaa      3300
     aaccagaacg cgcgggaatt tgcaagtgag tttcctagag cagccgaagc aattactcgc      3360
     catcattatg ttgacgatta tctagacagt ttcgggacga tagaagaagc ggttacagtc      3420
     ggccgagagg tgaaagaaat tcacgcaagg ggtggatttg aaattcggaa tttcctgtcc      3480
     aacaaagcag aactagctga atcggtagga tcccagtcaa cggcgatgga gaaactgttt      3540
     ccagcaggaa acgaagaata tgcggaatcc gtcctaggaa tgagttggat cccttcaagt      3600
     gacaacttta cgtattccat gcagtttcga gaaagtctgc aaaacattgt ggccgaagga      3660
     catgttccca caaaacgaga agtattgcgg gtcgctatga gtctcttcga cccattagga      3720
     ttgataacgt tctatttaat tcacggtaga atcctaaagc aaaacatatg ggcgtctaag      3780
     atcaactggg acgacgtcat tgataatgag ctgtgcgaac gatggcgttt gtggattgga      3840
     tacctaccac aattagattt gctccgtatt ccacgatgtt actttgcagg agggaatcag      3900
     cagacgtact caacgttgca aatacatgtt tttgtggatg ctagtgaagc agcattttcc      3960
     agtgtaatct atttccgcgt ggaaacagtc tcgggagcga aagtagcgct agtgtcagcc      4020
     aaatcaaaag tagcgccgct gaaaatgttg tctattcccc gcttggagct acaggcagct      4080
     gtgttgggaa cccggctgtt gaacagtgtc atctctatgc acaatctcca agtaacccga      4140
     cgagtactct ggactgattc tcgaacggta ctttcgtgga tcaactccga tcatcgcaaa      4200
     taccatcagt tcgtaggttt ccgtgtagca gaaattctgt ctacaacgga attatcggaa      4260
     tggcggtgga ttcccactag aattaacgta gctgaccttg ctactaagtg gggtgctgga      4320
     cccgatttta gcggaaatag tgtgtggttt cgtggaccgg aattcctacg ccaaccagag      4380
     gatatgtggc cacagcaaca ccgagaaata gactcaaccg tagaagaaat tagaccttgc      4440
     aacattcacg tatccaaacc agagctaccc atagatcttt cacgttttag tcgttgggaa      4500
     aggcttcatc gaacgatggg atacgttcat cgtttcacgg acaacattca gcggaagcga      4560
     caaggagcac cgttggaggt tggaaatctc acccagtttg agttggtaaa ggcagaaaga      4620
     agtctgtgga agtttgctca gcaagaatat tactctgtgg aagtagagca gcttggcgag      4680
     aatggcgata cggtagtctc gaaatcaagt aaaattttta agctgtgtcc gttcatggat      4740
     aaattcaatg tacttcgcat gcgaggtcga cttgagttat ctacatacgt accatacgaa      4800
     gcaaagtatc cagtaatact tccaccagaa tctgttatta ccaacctgtt ggcagattgg      4860
     tttcatcggc gatatcaaca cgcaaaccgg gaaacggtgg ttaatgaaat gaggcagtat      4920
     tatcaaatcc cgaaactgcg agcattgatc gctaaaacag ccaagaattg tatgcaatgc      4980
     cgagtatgca aggcacttcc taggacacct gttatggctc ccttgccgaa agtgcgcctc      5040
     accccatttg ttcgaccatt tactttcgta ggcctcgatt acttcggccc catattagca      5100
     aaacagggtc gaagtaacgt taaaaggtgg attgcgctat tcacgtgcct gagcattcgt      5160
     gctgtacaca tggaggtagt tcatgccttg tcgacggagt catgcgttct ggccatccgc      5220
     agatttgtta cgcgtcgtgg ctcaccagct gaaatattta gcgataatgg aacaaacttt      5280
     catggagcta ataataaatt gaagaagcaa atccaagagc gcaaccgtac gcttgctgca      5340
     atcttcacta acgccaatac gaagtggtcc ttcaacccgc ctggagctcc tcacatgggg      5400
     ggagtgtggg aacgaatggt acgctcggta aaagttgcca taggtacctt taccgaagct      5460
     actcgaaaac ccgacgatga aacgttagag acggtaatta ttgaagcaga gggtataata      5520
     aattctcgac cgttgacgta cattcctgtg gagtctgctg atcaggaatc cttaacacct      5580
     aaccatttcc tactgggtag ctccaatggt gtcaagcaac taccggtgtt accaacagag      5640
     taccgaacaa ccctaagaag tagctggaaa ttagcacagc atttggcaga cgggttttgg      5700
     agaagatggt tgaaagaata cttgccagta atatcacgcc gatctaaatg gttcgacaac      5760
     gttagggaca tttcagtagg cgacctggta ctcgttataa acggagaagt aaggaatcaa      5820
     tggacaagag gacgtgtgga gaaggtgatt atgggtgcgg acggtaaagt tcgacaagct      5880
     tgggtacgaa cagctggagg attgcatcgt cgaccgtcag ttaagttggc gttgctcgac      5940
     gtcgctcaga gttgtgaaca agatctagga catcgtagtc gttcacagga gggggaa         5997
//
ID   BEL-63_AA-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   AAGE02019161;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_AA_;
KW   BEL-63_AA-I; BEL-63_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019161; Positions   53989   54636.
XX
SQ   Sequence 648 BP; 240 A; 105 C; 115 G; 188 T; 0 other;
     tgtgacggcg aacaacccta gccttagcca gactgccctg ttgtgctttt tgtacctgaa        60
     ttccctcccg ttatgtcagt tcgacagttc gagaaacagc gattgaactg agtcataagc       120
     agagaagaag aaatggaatg atttggatta ttggaattct ttattatatt gaagttgaag       180
     ctatcgaagt tgaatttgcg caatactagt agttgaagcg gacagagagc ctttcccgag       240
     ataatagtaa gagttgtaga actaaaaaag aaaattatta ctactaatta aaatttacaa       300
     tgtttacatt tacacagcat agattgattc tatcaacaca aacatttaaa caaagcttac       360
     ggcttacaaa ttaaaaataa agctaagcta ccatagtgag taaatgtaac taatagttca       420
     tagttaaaat tgttaaaaat aacatgaaat tatagtctac agctggaaga ttaaccctta       480
     aagtaaatgc taggagagga atccgtgaat gagcaaaaac tgaaaatttg taagtaatct       540
     actatatcta tgaacgcata tgtaatctaa caacaaaata tattccagtt aaagttgcct       600
     tgatactaca gttctgtggt cccgcttcta aaaagttcag tccgaaca                    648
//
ID   BEL-63_CQ-I repbase;    DNA;    INV; 6238 BP.
XX
AC   AAWU01017436;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_CQ_;
KW   BEL-63_CQ-LTR; BEL-63_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6238
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 279-279 (2011).
XX
DR   GenBank; AAWU01017436; Positions   53196   46959.
XX
CC   Positions [4803-5387] - Integrase core
CC   'GTCTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           435..5741
FT                 /product="BEL-63_CQ-I_1p"
FT                 /translation="MPPKEATKVLAERLAKRKGILALRDNIEKFVSKFNGE
FT                 LDMCQVSVRLDSLDQLKNDFLDVQNNIEKLDEPNNLDANIAQRVDFEQRYC
FT                 DIKGFLLSKRPVDLNQTLEMSTMSHSHSHNFHLRLPKIELPQFDGDYSRWL
FT                 SFRDTFVSMIHANSDIPTVAKLQYLLQSLGPTAKKPYESVDIKADNYFTTW
FT                 SAILKRYDDKRHLKRQLFRGLYDLPAVPEECASAIHNLADDFQRHVKALEK
FT                 LDELVQHWDTPLVNMLSYKLDQATLRAWEEKNSEKADVKYDDMIEFLYQRV
FT                 RVLEASGSESKQSASAKVAGSSSKQSRPRFVANAASSSSSNGSCLLGCSEN
FT                 HHLRRCPVFLGKDVQQRRDLVAQKRLCWNCLSAGHPARKCGSKFSCQTCKQ
FT                 KHHSLVHVSSPTRVSSTPAVTSVTIDQPSNTASANAAPVGSSSTTPQVSMA
FT                 VQTACNTVLLETVVVNVVDDHGKKHKARALLDSASMSNFMSGQLAKNLYNR
FT                 PIKVDVAVAGIGVSTQRVRSAITAAIESRNTTFSTKLEFLILRQPSAELPT
FT                 VPIDVSTWKLPDIVLADQRFNVPEPIDLVIGSESFWELHTGRKISLGAGLP
FT                 WVVETHFGWAVSGTASAETTCIPRICQLSAVNDRLEAAIQRFWEVETIPEG
FT                 PAHSVDENRCEEFFAKTTTRDATGRYVVRLPLTDNPEIVLGDSKTIAERRF
FT                 LGLERRLDRDPATKEAYHKFMHEYLSLGHMELVDGPVDYRKPHCYLPHHPV
FT                 FKQSSTTTKVRVVFDASCKTSSGYSVNEKMLVGPVVQPDLLSTLLKFRFQA
FT                 VALVADVEKMYRQVLVHPDDRPLQRIVWRFNPTDPISTYELRTVTYGTASA
FT                 PFLATRTLAQIAQDNKELHPDAAEAVARDFYVDDLISGAPDVETAIKLRRE
FT                 ISTMLAAAGFPLKKWASNAPEVLRDIPTEDLALLPVYDLQDGQTVTTLGIV
FT                 WDPQTDTLCFRVQLPPPASVLSKRKVMSYIAQIWDPFGLVGPTTLKAKLFM
FT                 QRLWALKHKGEACAWDTPLPLKIQLEWKEFHMLLHMLSQVKVPRFVSTPGA
FT                 TIQLHFFSDASEKAYGACCYVRAAAANGVTTRLLSSKSKVASLSSHDSINK
FT                 LELNGGRLSTQLYKKVKKALNLSDAVPVFFWTDSLTVLHWLNSLPSRWKTY
FT                 VANRVSQIQLCTSRHVWGHVPGVDNPADYISRGLSPLELLDCLCWWFGPLW
FT                 LKQNPDYWPKTVLTAADASAVTKEERKVPIVAMTTVEADFSNRVFSLTSSF
FT                 PKLRRDIAFCQRFLSKLRERSVQRRDAPEQYAPLTVGKVTTPLSVTPLSTH
FT                 ELQHAEFSLVRLAQQEHYAEEISDLSGGERVSKSSPLKWLNPFVDENRILR
FT                 VGGRLRNAKLTHESKHPIVLSARHPLTALLASYFHEKLLHAGPALMLATLR
FT                 QKYWILGGRNLVKSVYHRCHTCFRSKPTLVIQSIADLPASRVAPTRPFSVC
FT                 GVDYCGPFYIKSPVRNRAPTKVYVAIFVCFSTKAVHIELVSDLSTPAFIAA
FT                 LRRLVARRGQVVELNSDNATAFKGAANALHRVYQMLKVEQVDRNEIFTWCA
FT                 ENGIRWKFIPPRAPHFGGLWEAAVKSAKTHLLKTMGTTSANYEDMLTLLAQ
FT                 IEMCLNSRPLTPMPDDPADAKVLTPGHFLVGSNLQAVPEMDLKEIPDNRLN
FT                 NWELTQKRVQQIWARWYPEYLQQLQSRATKGCNPPVAVEVGRVVIIKEDNV
FT                 PPASWPLGKIVKLHPGKDGIVRVVTLKTAAAKEVVRAVARIALLPTPSQ"
XX
SQ   Sequence 6238 BP; 1406 A; 1769 C; 1711 G; 1352 T; 0 other;
     ttagtggtcc ttcgagccgg atcgaaggcc atacggaccg ggaagtgcgc gcattgggtg        60
     attacgggcc acgcggccgt ccgagctact gtcccgcgga tcgggatcgg gatcggcgcc       120
     atcgcgttgg gaggttgtac caagacgggt acacctcgtt cgtcgtgtgt gtgggacata       180
     ccgtacgcgg tatcgtgcgc gcgcgcgcgt ggaattacgg tcacgcgtgc cagtgtcgtt       240
     gtggtagaaa taccaggtcg cgcgcgagtg ttacaggtcg ttctgctgtt gctgagcagt       300
     atctgtggtg gtgctgctgc tgttgaagag gtgcttgacc tgcgctgcgg gtgattgacc       360
     tgtaagcgtc gtttgctgga acgagatcgt cgcgggagaa gacatctttg ctggtagctg       420
     ttcaagccgt cgagatgccg cctaaggaag cgaccaaagt tctggccgag cggttggcca       480
     agcgcaaggg gattctcgcg ctgcgtgaca acatcgagaa gtttgtgagc aagttcaacg       540
     gcgagctgga catgtgccaa gtgtcagtgc gactcgattc cctggatcag ctgaagaacg       600
     acttcctgga cgtgcagaac aacatcgaga agttggatga gccgaacaat ctggacgcga       660
     acattgctca gcgggtcgac ttcgagcagc gctactgtga catcaaggga tttttgctct       720
     ccaagcgacc tgtcgatctc aaccaaacat tggagatgtc tacgatgtct cactcgcact       780
     cgcacaattt ccacctgcgt ctcccgaaga tcgaattgcc gcagttcgac ggagactact       840
     cacgctggtt gtccttccgg gacacttttg tgtcgatgat ccatgccaac tcggacatac       900
     caactgtagc caagctgcag tacctgctgc agtcgttggg accgacagcc aagaagcctt       960
     acgaatccgt cgatatcaag gctgacaact acttcacgac gtggtcagcg atactcaagc      1020
     ggtacgacga caagcgtcac ctgaagcgac agctgttcag aggtttgtac gatttgccag      1080
     cagtgccaga ggagtgtgct tctgcgatcc acaacttggc tgatgacttc caacgccacg      1140
     tgaaggcgct cgagaagttg gacgaacttg tgcagcattg ggacacgccg ctggtaaaca      1200
     tgctgtcgta caagttggat caagcgactt tgcgagcgtg ggaggagaag aatagcgaga      1260
     aggccgacgt taagtacgac gacatgatcg agttcttgta ccaacgggta cgcgttttgg      1320
     aagctagcgg atcggagtcc aagcagtcgg catcggcaaa ggtggccggt tcctcatcga      1380
     aacaatctcg gccgaggttc gttgccaacg ctgcctcttc ctccagctcg aacggttcgt      1440
     gcttgcttgg gtgttcggag aaccatcatc tacgcagatg tccagtgttt cttgggaagg      1500
     atgtacagca acgccgagac ctggttgcgc agaaacggct gtgctggaac tgtctctcgg      1560
     ctggccaccc ggccaggaag tgtgggtcca agttctcgtg ccaaacttgt aagcagaaac      1620
     accattcact tgtgcacgtc tcgtctccga cgagggtttc atcgactcct gctgtgactt      1680
     ccgtcacaat tgatcaaccg tccaacaccg cgtcggcgaa cgcggccccg gtaggctcaa      1740
     gttctaccac tccacaagtc agcatggcag tgcaaactgc atgcaacacg gttctgctgg      1800
     agacggttgt ggtgaatgtg gttgacgatc acggcaagaa gcacaaggcg cgagcgttgc      1860
     tggactcagc ttcgatgtca aacttcatgt cgggtcagct ggcaaagaac ctctacaatc      1920
     ggccgatcaa ggtggacgtc gcagtagctg ggattggagt ttcaacacaa cgagttcgca      1980
     gcgcaatcac agccgcgatc gagtccagga acacaacgtt ttctacgaag ctggagttcc      2040
     tgatcctgag gcagccttct gcagagctgc caaccgtgcc gatagacgtg tcgacatgga      2100
     aacttccgga tattgtgctg gcagatcaac gcttcaacgt acctgaaccg atcgacctgg      2160
     tgatcggcag tgaatcgttc tgggaactgc acactgggcg gaagatctcg cttggagcag      2220
     gtcttccatg ggtagttgaa acgcactttg gttgggcggt atctggcacc gcatccgctg      2280
     aaactacctg catcccacgc atctgtcagc tttcagctgt gaacgatcgt ctggaggccg      2340
     caatccagag attctgggaa gttgagacga tcccggaagg ccccgctcac tctgtcgacg      2400
     agaatcgctg cgaggagttc ttcgccaaga cgaccacccg tgacgctaca ggaaggtacg      2460
     tggttcgtct tcccctgacc gataaccctg aaatcgtcct gggggattcc aagaccatcg      2520
     cagagcgccg ctttctcggc ctggaacgtc gattggatcg agatcctgcg acgaaggagg      2580
     cctaccacaa gtttatgcac gagtatctgt cgctgggcca catggagttg gtggacggac      2640
     ctgtggacta ccggaagcca cactgctact tgccgcacca ccctgtcttc aaacaatcaa      2700
     gcacaacgac gaaggtcagg gtcgtcttcg acgcgtcgtg caagacgtcg tccggctact      2760
     cggtgaatga aaagatgctc gttggaccgg tcgttcaacc ggacctgctg tcgacgctgc      2820
     tgaagttccg gtttcaagcg gtcgcactgg tggcggacgt cgaaaagatg taccgtcaag      2880
     tgctcgtgca tcctgacgat cggcctctgc agcggattgt ttggcgattc aacccgacgg      2940
     atcccatctc gacctacgaa ttgcggacgg tcacctacgg cacggcaagc gctccctttc      3000
     tggcaaccag aacgctcgct cagatcgcgc aagacaacaa agaactccac ccggacgctg      3060
     ctgaagctgt tgcacgagat ttctacgtcg acgacttgat ctctggtgcg ccggacgtgg      3120
     aaacggcgat caaactgcgc cgcgagatat ctacgatgct tgctgctgct ggttttccgc      3180
     tcaagaagtg ggcgtctaac gcccctgaag tgctacgaga cattcccacc gaggatcttg      3240
     cacttctgcc ggtttacgac ctgcaagatg gtcaaactgt aaccacactc ggcatcgttt      3300
     gggacccaca gacagacacc ctctgtttcc gggtccaact accaccccct gcgtcggtgc      3360
     tctcaaagcg caaagtgatg tcttacatcg cacagatttg ggacccgttt ggactggttg      3420
     gtccaacaac attgaaggcg aagctgttta tgcagcgctt gtgggcgctc aaacacaaag      3480
     gagaagcctg cgcgtgggac accccgctcc cactcaagat ccagctggaa tggaaggagt      3540
     tccacatgct gctgcacatg ctcagccagg tcaaggttcc gcggttcgtc tctacgcctg      3600
     gcgccactat ccagttgcat tttttctccg acgcgtcgga aaaggcttac ggcgcctgct      3660
     gttacgtccg agctgcggcc gccaacggag ttaccactcg tctgctgtcc tcgaagtcca      3720
     aggtcgcgtc gctgtcgtcc catgactcga tcaacaaatt ggagctaaat ggtggccggc      3780
     tctctacgca gctgtacaag aaagtcaaga aagccctgaa cctgtctgat gccgttccag      3840
     tcttcttctg gacagattcg cttacggttc ttcactggtt gaactctctg cccagccgtt      3900
     ggaagacgta cgtcgcgaat agggtgtccc aaatccagct gtgcactagc cgccatgtct      3960
     ggggacacgt acccggcgtc gacaatcccg ccgactacat ctctcgagga ctgagcccgc      4020
     tggaactgct cgattgtctg tgttggtggt ttgggcccct ttggctgaag caaaatccgg      4080
     actactggcc aaaaactgtg ttgacagccg cagacgcttc agctgtaacc aaggaagaac      4140
     gcaaggtgcc gatcgttgcg atgaccaccg tcgaggctga tttcagcaac cgtgttttca      4200
     gcttgacctc gagctttcct aagctccgtc gcgacatcgc attctgccag cgctttcttt      4260
     ccaagcttcg tgaacgctcg gtgcaacggc gcgatgcacc tgaacagtac gccccgctta      4320
     ctgttggaaa agtaacaacc cctctatcgg ttacgccgct ctctacgcac gaactccaac      4380
     acgctgaatt ctcgctggtg cgcctagcgc agcaagaaca ctacgctgag gagatttctg      4440
     acctctctgg aggtgaacgg gtgtccaagt cgtcgccact caagtggttg aacccgtttg      4500
     ttgacgaaaa ccgtatcctg cgagtcggtg gccggcttcg gaacgccaaa ctgactcacg      4560
     aaagcaaaca cccgattgtt ctctctgcgc gacacccgct aacggctctg ttggctagtt      4620
     acttccacga gaaactactg cacgcaggtc ccgccctcat gctggccact ctccgccaga      4680
     agtactggat cttgggcgga cgaaacctgg tgaaatctgt ctaccatcgc tgccacacct      4740
     gtttccgcag taaacccaca ctggtaatcc agagcatagc agatttgcca gcatcgaggg      4800
     tcgcaccaac tcgtccgttc tctgtctgcg gcgttgacta ctgcgggccg ttttatatca      4860
     agtcaccagt acgcaaccgc gcccccacca aagtctacgt ggccattttc gtttgctttt      4920
     cgaccaaggc ggtccacatc gagctggtga gcgatttatc cacaccagca ttcatcgcag      4980
     ctctacgtcg actggtcgcc cgcagaggac aggttgtcga gttgaattct gacaacgcga      5040
     ccgccttcaa gggtgctgcg aatgcactgc accgtgtgta ccagatgctg aaggtcgaac      5100
     aagtcgatcg gaatgagatt ttcacctggt gcgcagagaa cgggattcgc tggaaattca      5160
     tcccaccacg cgcgccgcac ttcggcggac tgtgggaggc ggcggtcaaa tccgccaaaa      5220
     cacacctact caagacgatg ggcaccacta gtgccaacta cgaggacatg ctcacactgc      5280
     tggcgcagat agagatgtgc ctcaactctc gcccactcac gcccatgccg gacgacccgg      5340
     cagacgctaa agtcctgacc ccaggacatt ttctcgtcgg gagcaacctc caagccgttc      5400
     cggaaatgga cctgaaggag attccagaca accgcctcaa caactgggag ctgacgcaga      5460
     aacgagtcca gcaaatctgg gcacgctggt accccgagta tctgcagcag ctgcagtcac      5520
     gtgcgacgaa aggttgcaac ccacctgtcg ccgtcgaggt cggcagagtc gtcatcatca      5580
     aggaagacaa cgttccgcct gcaagctggc ccctcggaaa aatcgtgaag ctgcacccgg      5640
     gaaaagacgg catcgttcgg gtcgtgaccc tgaagacagc agcggccaag gaagtcgtac      5700
     gtgctgtcgc ccgcatcgct ctcctgccaa caccaagcca atgatcatca tcaaagtcca      5760
     ggtagagcaa cccattgtgg gagatcttgc tcgatgcgca cctgcgcata gtccaggtaa      5820
     ttatgtttcc aataatccac atcaacccgt tcgatctacc tggtctttct ttttccggtt      5880
     tggcgaggat gagcagtcga gacagagcga gacaactcgc accaaatcca ggtagagcaa      5940
     cccacttggg agaacttgct cgatgcgcac ctgcgcagtg tacaggtaat tgcggttcca      6000
     ataacccaca ctcgcaagtt tgatctacct ggtctttctg tctttctcgg tggcgaggac      6060
     aaacgctgag gctgaacgag ccttgctgca cttcacctgc atcggagcat cccacacctg      6120
     tttgctgcac caacgaaaca gtgcaatttt gaattaggga aaatgctaga gtagggaagt      6180
     gtgattagaa attaagtagt tttagttgaa atgctgccac atttcaaggt ggccggaa        6238
//
ID   BEL-63_CQ-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   AAWU01017436;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_CQ_;
KW   BEL-63_CQ-I; BEL-63_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 280-280 (2011).
XX
DR   GenBank; AAWU01017436; Positions   46958   46311.
XX
SQ   Sequence 648 BP; 174 A; 143 C; 163 G; 168 T; 0 other;
     tgttgaagat gtaacttaag aattgtaaat agtacggtta aggggaacat tgggttactt        60
     aaaattagtt aatttagaat ttgtaaatat ctacctaata acctaaacat aaatgtaaat       120
     ttgtgccaac acgatctgaa agtgatctaa agccgatcac acacatgcaa tacacacatc       180
     gtacagcaga tcgctgtaca gctcgaagct ctatagggag aagaattgta cttagagtat       240
     cagttcggaa taaacgatca ccgcgtacac accagtttgt gcccttacac gccgcgttct       300
     ctctcggaat aaagtttgtt gacccgcaac acttttttct ttgctgtgtc cgaacggttc       360
     gatcgcgcgt gaattcgcta agtgccctag aaatcgggac ttagccgatt tggaggcaaa       420
     tcgctttgct cttggggatt gtggcgcatc ttgaccgacc tggcgaaagg tggcaagagc       480
     ggccagcgct gaagatttgt ggtctgcgga cgaagaaggg cttgtggcga cccaagccct       540
     cggtcaccgt ggatagaccg tgtgtgtgtg cgtgtgctta accggtgcta cacaaggtgt       600
     agcaaggaaa gcccttcgat cccggcaccg ttcgctctgt gctgaaca                    648
//
ID   BEL-63_DTa-I repbase;    DNA;    INV; 5287 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5287
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (22-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are 99% identity to each other.
XX
SQ   Sequence 5287 BP; 1435 A; 1369 C; 1193 G; 1290 T; 0 other;
     ttgtctggtc cttcgagagc cggaatactt ccgcatcttt ataattgaat ctgcacacca        60
     tggagcaaca gacgcttaaa cgtcttatcc aagcacgtgg tcggctaaag gctaccataa       120
     ctcgcttggt gaattacatc gagaatccac ctccacagag cacttactcc ggagtcgatg       180
     ccatgctgga acggctaaat caagcattca agagccttga ggaggtcacc gacgaaatgc       240
     acttgtacga taatgttgag ggtttcgagg atcctaccga agacttccaa acgtatgagg       300
     agaagtactt gcacgcgctt accttattcg cgtcgttaaa gagcgacctt cagccaagcg       360
     ccataccgca agcggatcac aacatggcca cattgctgca acagcaaagt gagttccttc       420
     agcgactttc tgagaacgga acatctacct tggccacgcc gccgcctgct gcagtttctt       480
     taactgaaaa tccgttgccg aaaatccaca taaaaccctt tggtggagac tacaaggaat       540
     ggccagcctt taaggatatt tacgagagca ccgtccacaa caagactcat ctgggaaaga       600
     ttcaaaagtt tcactacctt aaatctttca tagttggtga agcagccaat cttcttagtc       660
     acatgtccat tacggaatca gcttatgatt cagcatggga acgcctcaat gaacgctata       720
     accgcccaag gcatatcgtg aactccttac tggacacctt catggaactg gttgctgccc       780
     ccaacggcga agtatctaat ctacgcaaac ttactgatgg cgccattaaa atcattcgtg       840
     ggctagatgc agttggggag accagccgtg actgctgggt gattcatctt gtactggcta       900
     aaattgattc cgactctaga agcaagtgga tagaggacac cagaggcgct gcgacgccaa       960
     ctgttacaga cttgtttaaa ttccttgatg atcgttgcga ggattttgaa ttaagccaag      1020
     ctacatcggc aatcaaactc gatcctggca gccacacaga caagcctgcc aaaacaaagc      1080
     gcgcacttat tgcagtgagc agtggcaatt gtggtaagtg tggctctgct gaccatcagc      1140
     tatatagatg ctctcaattt caaaatctga acatcgaaca tcggcgctcc tttgagaaag      1200
     gaaagtcgct ttgcttcaat tgcctacgcc ctggccaccg atcttcgcaa tgtaaatcga      1260
     aacattcgtg caagcactgc aatggccgtc attactctct tgtacaccct gaaaacatgg      1320
     attccatgac aattgcttct gcggacactg cacaggccag ttctcaaact tctggatgta      1380
     gctcaacttt ggtcgcccag acgcaaaaca gcacatcatt agcacagtca ccgtgatcaa      1440
     aagaagcaca ttgcccacag ctttggtgta tgtccaaaac actaaaggtt cttacacaat      1500
     ttgccgtgtg cttttggata gcggttctga gctgtcatac gtttctgaac gatgcgtcaa      1560
     cgcacttggg ctcgcacgtt caccctcaag aatactagtt tccggaatat cttccgtcaa      1620
     ggccgaaact actagaggat tggcaacgct gcatatcaaa tcaatggtgt cactgcatac      1680
     gattgttgtc gcagcccatg tgctgggcaa aatcacatca tcacttcaac gggacgacat      1740
     tgacgaaaca gctttaagga tctacgatgg actccagtta gccgatacat cctttaacac      1800
     atcttcacca gtagacattt tactgggaaa tgaacaaatt tggtccgttc tgtcaggtga      1860
     taaaaaatat gacgccgatg gaaatattat tgccatcagc tcgatctttg gatggataat      1920
     cacttccgtt gcaatgccgc atccattaac cgccaacacg ctcgtgacta ctgttgacat      1980
     aaacgcctct cttcaacgct tttgggagat cgaggataac actgaccaca aacaacaaga      2040
     cccttcgcac gaaaaggtgg agcagcactt tttgaccaca cattcccgag acccagacgg      2100
     caaatacacc gttgaattca aaccacgaaa gccaagagtt ggagacagcc tgcagggcgc      2160
     tgtctcacgc ttctatgctg tggaacgtcg cctacagcgt gatatggagc tacgcaagca      2220
     atattcaaaa tttatgaacg aatatctaag cctaggtcat atgcgtaagc tggccccaga      2280
     agaatgcaat acatcaggca aaacgtttta catgccacac cacccagttc taggaaagaa      2340
     gctgcgcgtg gtatttgacg ggtcatttga agacgtaaac ggccacgctc taaatgatgc      2400
     cttacacatt gggcccagca ttcaacgtaa cctttttcac gtatgccttc gctttcgaat      2460
     gcacaagttt gtgttttcgg cggacatagt caaaatgttt cgccagatct gggttgcccc      2520
     taagcaccgc aactttcaac ggatcgtatg gagagatgct ccgaatgatc ctcttcaaca      2580
     ctttcaactc tgcacagtta cctatggaac aagctgtgca ccgtttcttg ctgtcagggt      2640
     actggaacaa ctagcgcgag accaccagga tgagtttccc acagcatcaa aaattgtgct      2700
     tgaggacttt tacgtagacg atgtccttac tggcgcagaa actggagacg aattacttag      2760
     ccgccgcgac gaactcatcc agctgatgtc caaggctaag cttgagcttg gcaaatgggt      2820
     gtccaacagc agccgcctca gccacaccat acaagaggag ctcccaataa ccagtgcggt      2880
     gaaggtttta ggaatgcatt ggaatcccca agacgacgtc ctgtcctaca agacttcact      2940
     ttccacggaa ccagaagcta ctaaacggca agtattgtca gatgtctcac gaattttcga      3000
     tcctctaggt attctggcgc ctgtggtagt acagttcaaa atccttttcc aagaactttg      3060
     gctacttgac ctggactggg attcaaagct cccaccgaag ctggctgagt ggtggcagac      3120
     ctgtcgcgac gatattaact gcataacaaa ccaaaggatt ccacgttttg tacccagcga      3180
     atcgggaaaa atcgaattac atggattttc agacgcgtct ataaaggcat atgccgctgt      3240
     cgtatacagc cgtgtaagca acgcagacgg cacctgcttg gtgtcactta tggcagccaa      3300
     aacacgggtt gcgccactaa agcaacaaag tcttcctcgg ctggaactct gtggagcgct      3360
     attgctcact cgccttctcc gagctgttaa ggagggctta cagcacaagg acataattgt      3420
     gcatgcttgg tgcgattcca cgattgtcct ttcgtggctg tcgcacaccc catcaaagct      3480
     gaaaaccttt attgccaacc gtacttcgga gatcctggat gtcataccac gcagcgcatg      3540
     gcatcacgtt ggctcaaagg ataaccctgc cgattgcgca tcgaggggaa tgctagcagc      3600
     caatctcatg agctatgagc tgtggtggaa gggtccacat tggctacacc ataacgatct      3660
     gcttgcttca aagcttcgta gtggcaacaa tcccaacaca attttggaca cgcccataat      3720
     ggaagggctg aaatcctctt cactatgcag ccgtattgaa tctaaacctg aagcgtcccc      3780
     gattgagtgt ctatcgcttc gagtttcttc ctggaccaag ctgattcgct gcactgctta      3840
     tgttcttcgc tttatgaatc gaagcagaat gaagaagcgg attccgtcaa gcctcacact      3900
     cacgtttgag gaaatcagcg aggcccgcat ttattgtctc aggcacgctc aagaaggctt      3960
     ctcatccgat atacacctgt tgaaaagggg aaaagctgtt gcaaattcgt caacacttcg      4020
     aacactttca cccatggttt gcaagaacgg cctgcttcgt gtaggtggac gcctctcaaa      4080
     ctcgctacta ccggaggaag tcaagcatcc aattattctg ccaaaaggtc atcgcatttc      4140
     tctgcttatt ttggagcacg agcacaggat acatcttcat ccaggtgtga cagcactttt      4200
     cgtcatcgtt cggcaacaat attggatagt tggcgcacgc aacatgattc gcaagcttac      4260
     acattcttgt cacaaatgtt ttcgccaacg ccacaaaaca gctgatcaat acatggcgga      4320
     cttgccagct gttcgggtac gtcaagcata tccatttgaa aatactgggt gcgactatgc      4380
     cggaccgctt ctgctcaagg tgcacaaggg aaggaatcca cgaaaggaaa aaggatacat      4440
     ctgcctattt gtctgcctag tgacctccgc aattcatttg gagttggcta cagatctcag      4500
     cacggagaca tttctcgctg cacttcgtcg ttttatctcc cgtcgaggca agtgtaccca      4560
     catcttcagc gacaacggtc gcaactttgt gggagctaag aaggtgttag acgacatgta      4620
     taagctcatc ctgtcacagc agcataacac tcaagtaact caatcgttgg ccagcgaggg      4680
     tatcaaatgg agtttcatac caccgcacgc accccactgg ggcggaaaat gggaatcagc      4740
     tgttcgctcc gtaaagcttc atctgcgtcg tgtcatcggg aattccatcc tcacatttga      4800
     gcagatgcac acccttctgg ctcaaattga gtccgtcgtc aattcacgcc ctctcttcgc      4860
     tacgtcagac accgaggttt cctacttgtc acccgcacac ctgctgattg gacgccctta      4920
     tacatcagtt ccagagggcg atcttggcca catagcagtt aaccgactgg attactggca      4980
     aaatgtacag gcaatgctac aaggcttttg gaagagatgg catcaggagt acctcactac      5040
     acttcaacag cgccctaagt ggaatacgga gaggaagaac gttgctactg gggatatggc      5100
     gatcatcaag gattcaaata caccccccgc cgcttgggct ttggcgcgcg taattgaagt      5160
     ctatccaggc aaggacgggc tggtacgcgc cgtaaagctg cgaacttcat caggagaacc      5220
     tgttagaccc atttctaaaa ttgccattct gcctaattca gaaacttagt ttcagggtgg      5280
     gccggga                                                                5287
//
ID   BEL-63_DTa-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   22-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-63_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-236
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5678-5678 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identity to consensus.
XX
SQ   Sequence 236 BP; 66 A; 47 C; 38 G; 85 T; 0 other;
     tgttgaggaa ccctataaca aatcataata atttggtata ttttatagca tgtaagattt        60
     tccctcttga gatggtctgg tcttgctatt tctcgctctc tctctcttgt ttctgaccac       120
     gaacggtcga catgaaataa agcgttcaat cttattgtga aataattgtg tattattcga       180
     tcaacccaat tcgaaagtgg tcttacaaac catttagcgt gatctattca ccatca           236
//
ID   BEL-640_AA-I repbase;    DNA;    INV; 5935 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-640_AA_;
KW   BEL-640_AA-LTR; Pao_Bel_Ele3; BEL-640_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5935
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4995-5543] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..4510
FT                 /product="BEL-640_AA-I_1p"
FT                 /translation="MPKSLDLQPPQVDEVSCITCNRLDVTGNFVQCDACDA
FT                 WCHFSCAGVDASVSERVWVCAKCRAAPSISGKSGHSSKTGSSLARELERLK
FT                 QQQEIELKRANLLLQMKFLDQQQELLNKAATTDETKDRSSNIDQEANTQRM
FT                 KDWVNHTIGDEEEGAVGGLSQQAASPTDQGNQQLHPERPDATKQVPAASLA
FT                 IATSTDRMPTHTDVAELRAQLETCIRRMEEGFHVNQQTKPQPPPLTLPSTM
FT                 QPGPSTGALPKTYPHQMDQAGKRPAISYAQNKNSTSFFDISPPANNTRNPP
FT                 SHFESLPVGTYSNPYDRVPNMNRSHSTRQELPPVIPPRVTHAEPQLGPNAQ
FT                 QLVARQSLARDLPVFSGDPAEWPIFISSYNYTTAACGYTDGENMIRLQRRL
FT                 RGSALESVRSRLVIPSTVPQVINALQMRYGRPELLINALLQKVRSIPAPRA
FT                 DRLEGLVEYGTAIQALCDHIEAANELSHLANPTLLQELVAKLPSDQKMMWA
FT                 GFRRGVNNVDLRTFCNYMQQVVEDATSVLSFESEERRHIGKEHGRERMKQK
FT                 RFLNSHTSGREGTFEVPAPKPTDKIECVSCGKLGHRIRECLEFKSLSVDNR
FT                 WRKIRSLGVCQNCLFRHGRRSCRMNTRCGTDGCQHKHHPLLHSVQRPSNAI
FT                 STQLAENHTHRRMTSSILFRIIPVTLYGDTGRVNTFAFFDEGSSVTMVEQD
FT                 LMTKLGVTGSPAPLCLRWTANTCRTEKNSQIVSISISGVDKQQKYKLVGAQ
FT                 TVESLNLPKQSFHYDEAVKRFDYLKNLPLRSYQNATPGILIGVDNLHLAVP
FT                 LKIQEGDVRGPVAAKTRLGWCVYGQQREGDREAYSFHVCECTPNETLHDTV
FT                 KTFFAVEEVGSSKPILSIEDQRALQLLQNTTRRVGERYETGLLWRTDYVEL
FT                 PDSYPMAVSRLKCLEHRMEKDSSLKLKIHQKVQEYVDKGYAHVATEDEIAN
FT                 ADPRRVWFLPLGAVTNPKKPNKVRIIWDAAAKVDGSSLNSHLIKGPDQLTA
FT                 LPSVLSRFRQFGIAVSADIQEMFHQILIKPEDKHSQRFLFRFDTEQPPSQY
FT                 VMDVATFGATCSPASAQFVKNLNAQEHSYQYPQAAQRIVDNHYVDDYLDSF
FT                 EDEDEAKQITEQVRLVHRNGGFNLRNWNANSDAVLQYLDEPAVNGDKNINL
FT                 INKEHTERVLGMLWVTKTDELRFATQMSQEVCALIETSTRPTKRQVLRCVM
FT                 TLFDPLGLLATFLIHGKVLIQELWKTGIDWDEKVTDDQFIRWRDWVQMIQF
FT                 IDMIRIPRCYFSSATQQTYENAQLHVFVDASPVAYCCVVYIRVTDQEGYGR
FT                 CSLAAAKAKVAPLKPMSVPRLELQGCVLGVRMLKFVEENHSISFSKRFLWT
FT                 DSTTALSWIKSDPSNFRPFVAHRIVEIQDSTSVDEWNYVPSLYNPADEGTK
FT                 WGEGPYFSHESKWFIGPRFLTYSEEYWPSMPTVSIEDKEERRISVMNHFSV
FT                 EPLIHFERFSKWEKLQRTVAYVLRFVSNIKPK"
XX
SQ   Sequence 5935 BP; 1671 A; 1393 C; 1459 G; 1367 T; 45 other;
     attcttcaaa gaatttaata tgcccaagtc gctggatcta caacctcctc aggttgatga        60
     agtaagctgt ataacctgca ataggctcga tgtaaccggc aacttcgttc agtgtgacgc       120
     ctgtgatgcc tggtgtcact tttcatgtgc tggcgtcgat gcatcagtga gcgaacgcgt       180
     gtgggtgtgt gctaaatgcc gcgccgctcc cagcatatct ggaaaaagtg ggcactccag       240
     caaaaccggt tcatctcttg ctcgagagct cgaacgtttg aagcagcagc aagagatcga       300
     gttgaaacga gcgaacctgt tattgcaaat gaaatttctg gatcaacaac aggaactgtt       360
     gaataaagcg gcaacgacag acgagacgaa ggatcgatcg agcaacatag atcaggaagc       420
     aaatacgcaa cggatgaaag actgggtgaa tcacaccatt ggcgatgaag aagaaggcgc       480
     agttggaggt ttatctcaac aagctgcctc tccaacagac caaggtaacc aacagcttca       540
     cccggagcgt cctgacgcta ctaagcaagt cccggcagca tctttggcca tcgccacatc       600
     aaccgaccgg atgccgactc acacagacgt agcagaactt cgagctcaac tggagacctg       660
     cattaggcgt atggaagaag gcttccatgt taaccagcag acaaaaccgc agcccccacc       720
     gttgactctt ccatcaacca tgcagccagg tccaagtaca ggagccctcc ctaaaacgta       780
     tccacaccaa atggaccaag caggtaagcg tccggccatt tcctacgctc aaaataaaaa       840
     cagcactagt tttttcgata tcagtcctcc cgctaacaat accagaaatc ctccttctca       900
     ctttgagtct ctgccagttg gcacatactc gaatccatac gatcgtgttc ccaatatgaa       960
     ccgatctcac tcgacacgtc aagagcttcc ccccgtcatt ccccctagag tcacccatgc      1020
     tgagccacag ctaggaccta acgcccagca acttgtagcg cgacaatcgc tggccagaga      1080
     tcttcccgta ttcagcgggg acccagcaga atggccaatt tttatctcca gttacaacta      1140
     tacgacggca gcatgcggct ataccgatgg agaaaatatg atacgtttgc agaggcgttt      1200
     aagagggagt gcactggaga gtgtaaggag ccgcttagtg ataccatcaa ccgtacctca      1260
     agtcatcaat gcgttgcaaa tgcgctacgg tcgcccggag cttcttatta acgcacttct      1320
     tcagaaggtg cgatcgattc ctgcgccaag ggccgatcga ctagaaggac tcgtcgaata      1380
     tggaacagca atacaagcgt tgtgcgatca catcgaggct gcgaacgaac tcagtcatct      1440
     agcaaaccct acgctactac aggagttggt agccaagttg ccgtcggatc aaaagatgat      1500
     gtgggccgga ttccgacgtg gtgtcaataa cgtggatttg cgcaccttct gcaattacat      1560
     gcaacaagtc gtcgaggacg ctacgagtgt gctttcgttt gaatcggagg aaaggcggca      1620
     tatcgggaaa gagcacggac gagagaggat gaagcagaaa cgttttctca attcacacac      1680
     ttcgggccgt gaaggaacat ttgaagtacc agctccgaaa ccgaccgata agatcgaatg      1740
     tgtcagctgc ggcaaattag gtcatcgtat tcgagaatgt cttgaattca aatcgcttag      1800
     cgtggataac cgatggcgaa aaatacgctc attaggagtc tgtcagaact gtctgttcag      1860
     gcatggtcga cgctcgtgcc ggatgaatac acgctgtgga accgatggat gccaacataa      1920
     acatcatccg ctcctgcatt cggttcaacg gccatcgaat gctatttcta cccaactagc      1980
     agaaaatcat acgcaccgtc gaatgacttc aagtattctc ttcagaatta ttcccgtcac      2040
     actatatggt gataccggaa gagtgaatac ctttgcattc tttgatgaag ggtcatctgt      2100
     tacgatggtt gagcaggatc taatgaccaa gttgggagtt accgggagcc ccgcaccgct      2160
     ctgtcttcgc tggacggcca acacgtgccg aactgagaaa aactcccaga ttgtgtctat      2220
     ttccatttct ggtgttgata agcaacaaaa gtacaaatta gttggagccc aaacggtaga      2280
     atccttaaat ttaccaaagc aaagcttcca ctacgatgag gccgtaaagc gcttcgatta      2340
     tttgaaaaat cttccgttac gaagctatca aaatgctaca cctggcattt tgatcggagt      2400
     agataactta cacctcgccg tgcctttgaa aatacaggaa ggagatgtgc gcggaccagt      2460
     agctgcgaag acaaggcttg ggtggtgtgt ctacggccaa cagagagaag gwgatcggga      2520
     agcctatagt tttcatgtat gtgaatgcac acccaacgaa acgcttcatg acacggtgaa      2580
     aacttttttt gcggttgaag aagttggatc ttcgaaaccc attctctcga tagaagacca      2640
     gcgtgctcta caacttctgc agaatacaac gcgtagagtt ggcgaacggt acgaaacggg      2700
     actgctatgg cggacagatt acgttgaact accggacagc tatcccatgg ccgtcagcag      2760
     gctgaaatgt ttggaacacc gtatggagaa agactcgagt ctgaagctga aaattcatca      2820
     gaaagtgcaa gagtatgttg acaaagggta cgctcacgta gcaaccgaag acgaaattgc      2880
     taatgccgat cccagaagag tctggtttct accattggga gctgtaacaa atcctaaaaa      2940
     accgaataag gtacgcatca tatgggacgc agcagcaaaa gttgatgggt cgtcactgaa      3000
     cagtcatcta ataaaggggc cagatcagtt aactgcgctc ccatctgtgc tctctcgctt      3060
     tcgacaattt ggtatagcgg taagcgccga tatacaagag atgtttcatc aaatactgat      3120
     aaaaccagaa gacaaacatt ctcaaagatt tctgtttcgc tttgatacag aacagcctcc      3180
     gtcgcaatat gttatggacg tggctacctt cggggccact tgctctccgg catcagcaca      3240
     gttcgttaag aacttaaatg cccaagagca ctcatatcag taccctcagg cagcccagcg      3300
     catagtcgac aaccattatg tcgatgacta tctggatagt ttcgaagatg aggatgaagc      3360
     taaacagatc accgaacaag tacggctagt tcaccgcaac ggcgggttca accttcgaaa      3420
     ctggaatgcc aacagcgatg cagtgttaca gtatctcgat gagccagctg ttaacggcga      3480
     taagaatatc aacctgatta acaaggagca tactgaacga gttctgggaa tgttgtgggt      3540
     aacaaaaacg gatgaattac ggtttgcaac tcagatgagt caagaggttt gcgcactgat      3600
     agaaacctct acacgtccca cgaaacgtca agtgctccgc tgtgtaatga cacttttcga      3660
     ccccctagga ctgctcgcga ccttcttaat ccatgggaag gtactgatcc aagaattgtg      3720
     gaaaacagga atcgactggg acgagaaagt tacagacgat cagttcatcc gatggagaga      3780
     ctgggtacaa atgatccagt tcatagacat gattcgtata ccaagatgct acttttcatc      3840
     ggcaacgcaa cagacctacg aaaatgctca gctacacgtc tttgtggacg cgagtcctgt      3900
     tgcctattgc tgcgtcgttt acattcgtgt gacagatcaa gaaggatatg gacgttgttc      3960
     actggcggct gcgaaggcaa aagtggcgcc attaaaacct atgtcggtac ccaggctaga      4020
     actgcaggga tgtgttcttg gtgtgagaat gttgaagttc gttgaagaaa atcactctat      4080
     ctccttttcg aagcggttct tgtggactga tagcacaacg gctctttcat ggataaaatc      4140
     ggatccaagt aacttccgac catttgttgc ccatcggatt gtggaaatcc aagactctac      4200
     aagtgtagat gagtggaact acgtgccgtc gttatataac ccagcggacg aaggaaccaa      4260
     atggggtgaa ggtccttatt ttagccatga aagcaaatgg tttattggac cgcggtttct      4320
     cacctactcc gaagaatact ggccaagtat gccaacggta tccatcgaag ataaagaaga      4380
     gcggcgcatt tccgtgatga atcatttctc tgtagaaccg ctgatccact ttgaacgatt      4440
     ctcaaaatgg gagaaactac aacgaacggt agcatacgtg ctgcgatttg taagtaatat      4500
     caaaccaaag taagatggtt ggtgagttac aacaacagga gcttcaggcg tccgaagcat      4560
     tcatctttag gcaagtgcaa tggacgtttt ttccagaaga gatggcgatg cttacccaga      4620
     agactgcaat gaaggacaat cttcaaacga ttccaagaac gagcaaactg tatcagctgg      4680
     tcccgacatt agatgaacga ggatttatgc gccagaatgg gcgcattgga gcagccaaca      4740
     tgcctcgtat aacatgcggt atccggtaat tttaccgaaa gatggcatag taactatgct      4800
     aatagtggac aaatatcacg kwacctamaa acacgcgaat ccagaamctg tggwaaawga      4860
     aatcsgccaa aattcgaaat cctmkacttc gatcgatcgt twgacgttat gggcggcagt      4920
     gtcaatattg caagcttckk gaagcacaac cagtgattcc gccgatggct cctcttcctc      4980
     cggcacgcct cgcagcgtat tctaggccwt tcagctacgt tggactggat tgttttggcc      5040
     cactgttggt caaacaaggt cggacaaamg tkaaaaggtg gatcgcactc ttcacgtgcc      5100
     ttactgtgck ckctgtccac cttgaagtkg tgaatagtct gacgacctca tcctgcgttt      5160
     cggcggtgck wagatttatt ggacgacgtg gtgcaccawt mgagttctat agcgacaatg      5220
     ggacgaattt tcaaggcgct gaacggttgt tgcgagaaca aatcgagcag gaattgtcat      5280
     cgaccttcac tmgckcgmga acaaaatggt tcttcattcc tccwkgtgca mcacacatgg      5340
     gtggcgcttg ggagagaatg gtgcaatcag tgaasgcagc tatgggcgaa gcatatgggg      5400
     acgggaagct tgacgaagaa ggtttatgga ctctggtast tsaggctgag agcgtakwga      5460
     attccakgcc attgacgtwt ttgccgctag actckgaaga gtccgaggca tcgactccwa      5520
     accakttttt gcttggsagc tctagtggag ttaaggaacc tggtcgtgac atacatgatc      5580
     aacctcgcgc tctgcagaas acctttgttg atattcakgg ccaactkaac tctttcwggg      5640
     cgcgctkgct gcgcgaatac ctgcccgtca tccgacggca gccgaagtgg ttcggagaag      5700
     ctgctaggga gataaaggaa ggtgacttgg ttctgattgc cgaggatgga aaacgatgcc      5760
     agtggcccag aggtcgtgtc cagaatgtta ttcgtggacc agatggtaag atacgtcaag      5820
     caatcctgcg taccgccaat gcggtattac gacggcctgt aacgaagata gccttgctag      5880
     atgttgggga cagtagtgca gtctcaactg acgtgaagat gcacccggcg gagga           5935
//
ID   BEL-640_AA-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-640_AA_;
KW   Pao_Bel_Ele3; BEL-640_AA-I; BEL-640_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-478
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 478 BP; 154 A; 83 C; 87 G; 154 T; 0 other;
     tgttgccgca agtctatcgc accagtaccg aaagggtgaa gaccaatagc ggatggtatc        60
     atgacacctg tcatcgagaa atccattgtt cggctgccac tcatcagcgc ttgtggtcaa       120
     cgggattaaa gtgtgatcga gaaggtggca tgcaagtgtt cccctattgt gagcaggaaa       180
     ttaattaaat aatattcgtt tatttatact ttcatcaaac taaaagtatt aaaattgaat       240
     tcaatcatct cttcactaat aattagattt tatatttaac tgttgatagg tttgaagaga       300
     tatatgcgga aatttgttat accctaaccc tattcgtgaa cttaaaagca ctaaattgta       360
     agttaccctt tgaaatctat aactgctatg atccttaata ttatgattat ttatagcttt       420
     gaagctgaat aaaatatagc cgtcgaacct tagtgcaagg gttttaatta ccgcaaca         478
//
ID   BEL-641B_AA-I repbase;    DNA;    INV; 6686 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 24.01, Created)
DT   27-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-641B_;
KW   BEL-641B_AA-I; BEL-641B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6686
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6686
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 92-92 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1314..6617
FT                 /product="BEL-641B_AA-I_1p"
FT                 /translation="MTEKKIREKIKKRERIVASLKRHAQFLGSFNPDIHTG
FT                 EVQSRLDKIEAKFEEFEEVQEEISELDVEGIYEEDCTVAYEEFEKLYYRLR
FT                 AALLAKLPTEGTAADLNNTLARNGPPLGAHTGVRLPQISLPEFDGDYKGWL
FT                 SFKSTYVSLIHDSGELSDVQKFHYLKSALKGEAAKLIESLTLTNDNYSIAW
FT                 NTITKRYSNEYLLKKRHLQALMEYPKVEKESSTAIHALVDEFEQRLKILKQ
FT                 LGEKTDDWGAMVVHWMCSKLDANTLQLWEDHAASTKDPTFTILVNFLEKRT
FT                 RVLEAVSSNVELKSSMQKGEVKRQKVVVHSATEGEKSGSVCCCCGESHFLG
FT                 RCSRFSKMTLKEKLQFVNSKRLCSNCLKSGHWVRDCTSKFSCRDCGKKHNT
FT                 LIHPGFPLSSSGAVHNDHTVGKPEKTRNEKPVATNVATNEMESEDESDQGA
FT                 VGSYNVGTKSGRISHVLLSTVVLVIRDQHGGKQMARALLDNGSQANIMSER
FT                 LCQMLSLKRRTINVPISGVGEAETRARFLVNTTVSSRVQDFSVGMEFLVLQ
FT                 KVTSELPSVHIPVGHWKIPTDIQLADPSFNVSNRIDLLIGAEHFYRFLFER
FT                 DTKRITLGPGLPMLINTVFGWIVTGKVSEVKSKAVSCFVASAPDSLEAQLH
FT                 KFWEIESNEDRPAWSKEEQDSENHFLRTFSRTEEGRYVVRLPKHVNFDQML
FT                 GDSRAMALSRFKKLERQLGWNTDKRLQYNAFMQEYLDLGHMRQVSEDELLE
FT                 EAKSPRKGYYLPHHAVLKESSTTTKVRVVFDGSASTDSGYSLNDALLKGPV
FT                 IQDELLSLLLRFRKHEVALVGDVEKMYRQVQVHSEDTNLQRIFFRFSPEEP
FT                 VKVFELTTVTYGLKSSSFLAIRALHQLATDEGFEYADATEAIVHDFYVDDY
FT                 IGGASSVEKAIQLQNNLDTLMKKGGFALRKWCSNRPEVLKGIPSDQLGTNL
FT                 SISFEMNPDEKVKTLGITWEPGTDQLRFFYDTTDSEQAWTKRNILSSIAKL
FT                 FDPLGLISPVIVTAKMLMQELALLNTGWDTPVPVDIEKKWKEFHSQMFKIS
FT                 ELRISRFAFVSNWVSVQFHCFADASTLAYGACLYVRTTDAVGNVRIELLAS
FT                 KSRVAPLKRLTLPRLELCAAKEAALLHSKVTKSLSMGNVQSIFWSDSTIVL
FT                 HWLRSPPNTWQTFVANRVSTIQITTHAHSWRHVAGKENPADLVSRGMAVDD
FT                 FLNSQLWKEGPPWLRDSEDVWPCSDGDRTPCEEHLEIRKNVNTVRVAEPPN
FT                 ELFCLRSSLPSLIRIVAYCRRFAHNSRYPNNRMASVDLTAEDIKSAKMALT
FT                 RMAQSERFPEELKSLQRQQRVDNKSSLKRLCPFLDEDGVIRVGGRLRLSNE
FT                 SYTVKHPAVLPNHHPFTDLVIQFFHSQNFHSGPQLTLAEIRQEFWPIHGKR
FT                 VVNAVLHKCVRCFRTNPTPIQQPMGQLPVGRVRPGRPFLITGVDYCGPFYL
FT                 KPPRRNTAPSKVYIAVFVCFSTKAMHLEISSDLSTASFLSVLRRFIGYRGI
FT                 PAEIHSDNAKNFSGAHNELKALYDLLHDPLRYSVIGKELSQQGIKWRFIPP
FT                 RAPNFGGLWEAAVRSVKTALKKEVGLTQLSYDQFTTLLVQITAALNSRPLS
FT                 PLSDDPTEFEALTPAHFLIGSAMKALPEPNLTTIPTNRLDHYQQVQQMFQR
FT                 LWHRWSKQYLTQLQVTTKNLPVNPIQVGKIAVLREDNLPPLCWPLARIVSL
FT                 HPGLDGIVRVVTVKTATGVYKRAVNRICPLPTDDLYFPTLRSSHNREF"
XX
SQ   Sequence 6686 BP; 1786 A; 1519 C; 1655 G; 1726 T; 0 other;
     tttaatggtg ccgtgaccag gatttgtggt tggagaaagt ctttattcgg ccaagtacat        60
     tgttctcaaa aagaataccc gttcggaggc catctttggg acaacggatc ttctgttacc       120
     gtactcatca acgggcggag aacttgctct cccaagtact gcactcacat ccacccatcg       180
     tgcttcatac gttggaggcc ttccgtactg tgtcacgcga cgaacactgc agtaaaagta       240
     aatacaaggc ctatatcgct taggccacag gtgagtggct ttccatctct atcttgctgg       300
     cttgcgggtg cttttgagag ttttgtttgg ttccatgtac cctgggttca actgctgctt       360
     gtaagtcgcg cgacttggtt tgcaacatcg aattagctgt ttcatcatcg cacacgacga       420
     cttgtggtag agcttcattc aacccctgga cggatcgggt agtactttcg ttcgtcgtgt       480
     gaaactgcat ctggagtgtg atttggaaat ttttgttatt caaggcctat tgtcgacagg       540
     cctcaggtga gtgcctgtcc aataactata cgcatatttg ggggtgctat aagatacttt       600
     ttaacccttt tttggtgcgc gtgatctttg gctacgattg gaggagtttc acccacggat       660
     cggttcatac tagagtgttc aacagccgga ctagtacctc tgaggagtga ttcggtccaa       720
     ctgctgggaa gcttgacatc acacgttaag tgcagtgggt attacgagac gagccagatt       780
     caacgggacg atttacgcta gaggattcga tcatcaaaaa cataaggtca gtggtatcga       840
     accattgcta tttcctgggg aattgcattc gctgcaggcg aatttcattg aacatacaag       900
     gcctgttgta gacaggtaca aggttagtac ctgtccaact gctattactt catagccagt       960
     gctattttgg attttttctc cctttttgga attttgctgg gtttcttgga gcttcttgca      1020
     tcaaaaggag ttttgctgca acacggtctg cattgctggt tgcactcttc aagatttttc      1080
     gacaagcctc aattcgaagt acgacaacga tcattccaag ttgcgccata atacgggggc      1140
     cgacgaaagc tgcattagtt tgaatacaag gcctatttaa gacaggcctc aggtgagtac      1200
     ctgtccagca gcctcatttg gagttttgca gtgcttcttg gctcgtttcc attctcattt      1260
     ccggtcgtca tcgttcgtac ttcgatttgc tgtgctggta gtggttgtgg gaaatgactg      1320
     agaagaagat tagagaaaaa atcaagaagc gggagcgcat tgttgcgtca ttaaaacgac      1380
     atgcgcaatt tctgggtagt ttcaacccag atattcatac gggggaagtt cagtctcgac      1440
     tggacaaaat tgaggcaaaa tttgaggaat ttgaggaggt tcaggaggaa atttcggagt      1500
     tggacgtgga aggcatctat gaggaagact gcaccgtagc ctacgaggag tttgagaaac      1560
     tatactatcg tttacgagcg gctttgctgg cgaaactacc aacggagggg actgctgctg      1620
     atttgaacaa cacgttagcg cggaatggtc cacctttggg tgcgcacact ggagttcgcc      1680
     tacctcaaat ttctttaccg gagttcgacg gcgactacaa aggatggcta tctttcaaat      1740
     cgacgtacgt gtcgctgatt catgactccg gggagcttag cgacgttcaa aagtttcatt      1800
     atttgaaatc agctctaaag ggggaagcgg ccaaacttat cgaatcgctt acgctcacca      1860
     atgacaacta ttcgatcgct tggaacacga tcacgaagcg gtattccaac gaatacctgc      1920
     tgaagaagag gcatctacag gcgctgatgg agtacccgaa agtggagaag gagtcgtcta      1980
     cggcaattca tgctctggtg gacgagtttg aacagcgttt gaaaatattg aagcagctag      2040
     gagagaagac tgacgattgg ggtgctatgg tcgtccattg gatgtgttcc aagttggatg      2100
     caaatacact gcaactttgg gaagaccacg cagcgtctac gaaggacccg acattcacaa      2160
     ttttggtgaa ttttctcgag aagcggacta gggtattgga agcggtttca tcgaacgtcg      2220
     aattgaagag cagtatgcag aagggggaag tcaagagaca gaaggtagtc gttcattccg      2280
     ctactgaggg cgagaaaagt ggttcggttt gctgttgttg cggagagtcg catttcttgg      2340
     gacgatgcag caggttttcg aaaatgacgc tgaaggagaa attgcagttc gtcaacagta      2400
     aacggctttg cagtaattgt ctgaagtctg gccactgggt acgcgactgc acatcaaagt      2460
     ttagctgtcg tgactgtggg aaaaagcata atacgctgat tcatccaggg tttccgttga      2520
     gcagcagcgg tgctgtacac aacgatcata ctgtaggcaa accggagaag acacggaacg      2580
     aaaaaccggt agcaaccaac gtagctacta acgagatgga atctgaagac gaaagcgatc      2640
     aaggagcagt tggatcatac aacgtaggga ccaagagtgg cagaatttca catgttctat      2700
     tatctacggt cgtactagtc attcgagacc agcatggagg aaaacagatg gctcgagcat      2760
     tgctagacaa cggatcgcaa gctaacatca tgagtgagcg attatgtcag atgctgagcc      2820
     tcaaacggag gacgataaat gtgccaataa gtggtgttgg tgaagcggaa acacgagcta      2880
     gattcctggt aaacactacc gtcagctctc gggtccaaga cttttccgtc gggatggaat      2940
     ttctagttct tcagaaggta acgtcggaat tgccatcagt gcatataccc gtgggacact      3000
     ggaagattcc aactgacatt caattggctg acccgagctt caacgttagc aaccgaatcg      3060
     atcttttgat tggagcagag catttctacc ggttcttgtt tgaaagagat acgaaaagga      3120
     ttacgctagg tccggggctg ccgatgctga tcaatacagt attcggttgg attgttacgg      3180
     ggaaagtttc cgaagtaaag agcaaagcag ttagctgttt cgtagcgtct gctccagata      3240
     gtttggaagc ccaattacac aaattttggg agatcgagag caatgaggat cggcctgctt      3300
     ggtctaaaga ggaacaagat agcgaaaatc attttctacg gacgttcagt cgcacggagg      3360
     agggtcggta cgtcgtacgt ttaccgaaac acgtgaattt cgatcagatg cttggagact      3420
     cacgcgcgat ggctctatcg cgattcaaaa aattggaacg gcaactagga tggaatacgg      3480
     ataagcgcct tcagtacaat gcatttatgc aagaatatct ggatctggga cacatgaggc      3540
     aggtcagcga agatgagctt ctagaagagg caaaaagccc cagaaagggc tactacttac      3600
     cccatcacgc agtgctgaag gaatccagca ctacaacaaa ggttcgtgtt gttttcgacg      3660
     gttcagccag cacggatagt ggctactcgt tgaacgacgc tcttctaaaa ggcccagtca      3720
     tccaagatga gcttcttagc ctgctacttc ggttccgaaa gcacgaagtt gcgctagtcg      3780
     gggatgttga aaagatgtac cggcaggtgc aggtgcactc cgaggacacc aatttacagc      3840
     gcattttctt tcgattctcc ccagaagaac ccgtaaaggt atttgaatta acgacggtca      3900
     cctatggctt aaaatcttct tcattcttag cgattcgcgc tctgcatcag ctggcaacag      3960
     atgaaggatt tgaatatgcg gacgctactg aggcaatagt gcacgatttt tacgtagatg      4020
     attacatcgg cggtgcatcc agcgtagaaa aggccatcca gctacagaac aatctcgata      4080
     cgcttatgaa gaagggtggt tttgctttac gcaagtggtg ttccaatcgg ccggaagttt      4140
     taaagggtat accatccgat caacttggca ccaatttatc catttccttt gagatgaatc      4200
     cggacgaaaa ggtaaaaacc ttgggaatta cctgggaacc cgggacagat cagttgcgat      4260
     tcttctacga tacaacagat agcgagcaag cttggacgaa aagaaacatc ctgtcgtcga      4320
     tagcgaaact tttcgatcct ttaggattga tatcaccagt aattgttacg gccaaaatgc      4380
     tgatgcaaga gcttgctttg ctcaatacag gatgggatac gcctgttccc gtcgacatcg      4440
     aaaagaagtg gaaagagttc cactcccaaa tgttcaaaat ttccgaattg cgaatcagca      4500
     gattcgcctt cgtttccaac tgggttagtg ttcagttcca ctgcttcgct gacgcttcca      4560
     cactggctta tggtgcgtgc ttatatgtgc ggacgacgga tgcagttgga aatgttcgga      4620
     tagagctgct cgcttcgaaa tcgcgcgttg cgccgctcaa gagattgacg ctaccgcggc      4680
     tcgaactatg tgcagccaaa gaagctgcgc ttctacactc gaaagtgact aaatctctct      4740
     ccatgggaaa tgtacaatct attttctggt ccgacagtac gatcgttctg cattggctac      4800
     gatcaccgcc taatacttgg caaacctttg tcgccaatag agtctcgaca attcaaatca      4860
     ccactcacgc ccattcttgg cgtcacgtag cagggaagga aaatcctgct gatttagtat      4920
     cgcgaggaat ggcagtagat gattttttga atagtcaact atggaaagaa ggacctccgt      4980
     ggctgcgtga cagcgaggat gtatggccct gttccgatgg agatcgtact ccctgcgaag      5040
     aacacttgga aattcgtaag aatgtaaaca cggtcagagt cgccgaacct cccaacgaac      5100
     ttttctgcct gcgttcatca ttgccttctt taattcgtat cgtcgcttat tgccgtcggt      5160
     ttgcccacaa cagtcgatac ccgaataaca gaatggcttc tgttgatttg actgctgaag      5220
     acatcaaatc ggcgaagatg gcactaaccc gcatggcaca atctgagcga tttccagaag      5280
     agctcaaaag tttacaacga caacagcgag ttgataataa atcgagctta aaacgactct      5340
     gtccattcct cgatgaagat ggagtcatta gagttggagg tcgtctgcgt ctttcaaatg      5400
     aaagctacac ggtaaagcat cccgctgttt tgccaaatca tcacccattc acggatcttg      5460
     tgatacagtt cttccactct cagaacttcc acagcggtcc tcagttaaca ttggctgaaa      5520
     tacggcagga attttggccc atacacggta aacgcgttgt caatgctgtg cttcataagt      5580
     gcgttcgatg ttttcgaact aacccaacgc ctattcaaca accgatgggg cagctgccgg      5640
     ttggtcgagt tcgcccagga cgacccttcc tgatcactgg tgtcgattac tgcgggccgt      5700
     tctatttgaa gcctccacgt cgaaataccg caccttctaa ggtgtatatt gcagtgtttg      5760
     tctgcttttc aacaaaagcg atgcacctcg agatttccag cgatttatct actgcgagct      5820
     tcctctccgt cctgcgaagg ttcatcggct accgaggaat ccctgccgaa atacactcgg      5880
     ataatgctaa aaatttctca ggtgcccaca acgaactaaa agcgctatac gacctactgc      5940
     atgatccact ccgttactcc gtaattggca aggagctgtc ccagcaaggt atcaaatggc      6000
     gcttcatacc tccacgggct cccaactttg gaggcttatg ggaggctgcc gtacgctctg      6060
     tgaaaactgc gctgaagaaa gaagttggct tgacacaatt gagttacgac cagttcacca      6120
     cacttctagt gcaaatcacc gctgcactga attctagacc tctgtcgcct ctatcagatg      6180
     accccactga atttgaagcc ctcacccccg cgcatttctt gattggctca gccatgaaag      6240
     ctctccctga gcccaatcta acgaccattc ccacaaaccg tctggaccac taccagcaag      6300
     tacagcaaat gttccaacgc ctttggcatc gatggagtaa acaataccta acgcagctgc      6360
     aggttacaac gaagaacttg ccagtcaacc ccattcaagt tggaaaaatc gctgtattac      6420
     gagaggacaa cctaccaccg ctatgttggc cactagctag aatcgtcagc ttacacccag      6480
     gtttggacgg aattgtgcga gttgtaacag tgaaaacggc gacgggagtt tacaagaggg      6540
     cagtcaaccg tatctgtcca ttgcccaccg acgatttgta tttcccaact ctaagatctt      6600
     cgcataatcg agaattttga attcgtagaa ataagatttt gctattttca atttagttat      6660
     tgaagctagt tcaagggggc cggtaa                                           6686
//
ID   BEL-641B_AA-LTR repbase;    DNA;    INV; 549 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 24.01, Created)
DT   27-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-641B_AA-I;
KW   BEL-641B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-549
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-549
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 63-63 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 549 BP; 196 A; 85 C; 110 G; 157 T; 1 other;
     tgttcaccgt gcccacgaat atctacctaa tttataattt gaatttatta agcctaacag        60
     tgaattaaaa cttacagcta ggattaaaag ggataaaact gttatacaca cgattgaact       120
     acacaacact gaacacatgc atctactgat aacacacata aaatgaatac ataacacaca       180
     tttaaaactc gcttataggt gtagataaga aaacgaatcc atatgtagat gcgattaaga       240
     ttacttttgc tcgtcagtag ccaacagatt gtcaggcaat aaagatcggt agcgtgtgtt       300
     aaataaatag tttatttcga ataaattggt agttgcgtat aagttcggag ttttagtgga       360
     ttttagaaga ataaagaagt gcctacaaat atctaacaac taggtttgaa gaattcgttc       420
     ggtattttgt gtggtggaca gatttctcca acgctgaata gcttggaagg cgttttgagg       480
     aacgatcgaa gatttagtgm agttgggaaa gactgaatcc aaccaacgaa ccgaggagta       540
     ttgtgaaca                                                               549
//
ID   BEL-641_AA-I repbase;    DNA;    INV; 6635 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-641_AA_;
KW   BEL-641_AA-LTR; Pao_Bel_Ele8; BEL-641_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6635
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5609-6118] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1270..2427
FT                 /product="BEL-641_AA-I_1p"
FT                 /translation="MTEKKIREKIKKRERIVASLKRHAQFLGSFNPDIHTG
FT                 EVQSRLDKIEAKFEEFEEVQEEISELDVEGIYEEDCTVAYEEFEKLYYRLR
FT                 AALLAKLPTEGTAADLNNTLARNGPPLGAHTGVRLPQISLPEFDGDYKGWL
FT                 SFKSTYVSLIHDSGELSDVQKFHYLKSALKGEAAKLIESLTLTNDNYSIAW
FT                 NTITKRYSNEYLLKKRHLQALMEYPKVEKESSTAIHALVDEFEQRLKILKQ
FT                 LGEKTDDWGAMVVHWMCSKLDANTLQLWEDHAASTKDPTFTILVNFLEKRT
FT                 RVLEAVSSNVELKSSMQKVEVKRQKVVVHAATDGEKSGSACCCCGESHFLG
FT                 RCSRFSKMTLKEKLQFVNSKRLCSNCLKSGHWVRDCTSKFSCP"
FT   CDS           4427..6118
FT                 /product="BEL-641_AA-I_4p"
FT                 /translation="MYKISELRISRFAFASKWVSVQFHCFADASTLAYGAC
FT                 LYVRTTDAVGNVRIELLSSKSRVAPLKRLTLPRLELCAAKEAALLHSKVTK
FT                 SLSIENVQSFFWSDSTIVLHWLRSPPNTWQTFVANRVSTIQITTHAHFWRH
FT                 VAGKENPADLVSRGMAVDDFLNSQLWKEGPPWLRDTEDAWPYSDEYCTPCE
FT                 EHLEIRKNVHTVRVAEPPNELFGLRSSLPSLLRVVAYCRRFAHNSRYPNDR
FT                 VASVELTADDIKSAKMALTRMAQAERFPEELKDLQRQQHVDNKSSLKRLCP
FT                 FLDEDGVIRVGGRLRLSNESYTVKHPAVLPNHHPFTDLVIQFVHSQNFHSG
FT                 PQLTLADIRQEFWPIHGKRVVNAVLRKCVRCFRTNPTPIQQPMGQLPVGRV
FT                 RPGRPFLITGVDYCGPFFLKSSRRNTAPIKVYIAVFVCFSTKAMHLEMSSD
FT                 LSTASFLSVLRRFIGYRGIPAEIHSDNAKNFSGARNELKALYDLLNDPLSF
FT                 SVICKELSQQGIKWHFIPPRAPNFGGLWEAAVRSVKTALKKEVGLKQLSYD
FT                 QFTTLLVQITATLNSRP"
FT   CDS           join(2573..3358,3362..4399)
FT                 /product="BEL-641_AA-I_2p"
FT                 /translation="MESEDESDQGAVGSYNVGAKSGRISNVLLSTVVLVIR
FT                 DQHGGKQMARALLDNGSQANIMSERLCQMLSLKRRTINVPISGVGEAETRA
FT                 RFLVNTTVSSRVQDFSVGMEFLVLQKVTSELPSGHIPVGHWKIPTDIQLAD
FT                 PNFNVSNRIDLLIGAEHFYRFLFERDTKRITLGPGLPMLINTVFGWIVTGK
FT                 VSEVKSKAVSCCVASAPDSLEAQLHKFWEIESNEDRPAWSKEEQDSENHFL
FT                 RTFSRTEEGRYVVRLPKHVNFQMLGDSRAMALSRFKKLERQLGWNTDKRLQ
FT                 YNAFMQEYLDLGHMRQVSEEELLEEAKSPRKGYYLPHHAVLKESSTTTKVR
FT                 VVFDGSASTDSGYSLNDALLKGPVIQDELLSLLLRFRKHEVALVGDVEKMY
FT                 RQVQVHSEDTVLQRIFFRFTPEEPVQEFELTTVTYGLKPSSFLAIRALHQL
FT                 VTDEGAEYPDATDAIVNDFYVDDYIGGASSVDEAIQLQNNLDTLMKKGGFA
FT                 LRKWCSNRPEVLKGIPADQLGTNLSISFDINPEEKVKTLGITWEPGTDQLR
FT                 FFYDTTDSEQAWTKRNILSSIAKLFDPLGLISPIIVTAKMLMQELALLNIE
FT                 WDTPVPVDIE"
XX
SQ   Sequence 6635 BP; 1779 A; 1493 C; 1629 G; 1723 T; 11 other;
     ttttatggtg ccgtgaccag gatttgtggt tggagaaagc ctttattcgc caagtgtatt        60
     gttccgtgaa ataatacccg tccgggggcc atctttggga caacggatct tctgttaccg       120
     tactcagcaa cgggcggaga atttgctctc ccaagtacta catccactgc actcacatcc       180
     acccatcttg cttcatacgt tggacgcctt ccgcactgtg tcacgcgaca attactgcag       240
     ttgtgagaat aaatacaagg cctatttcgc ataggccaca ggtgagtggc tttccatctc       300
     tatctcgctg gcttgcgggt gcttttgata gtttttcttg gttccatgta cactggtttc       360
     ttctggtgct tgtaacgtcg cgcgactcgg ctttgcaacg tcggataagc tgtttcggta       420
     tcgcatacac tggacgactt gtgatatcga ttcattcaac cccttgacgg attggtagta       480
     ccttcgttcg tcggttcgct tctggagagc aatttggaaa atttaggaat tcaaggccta       540
     ttgtcgacag gcctcaggtg agtgcctgtc caataactaa acgcatattt ggtggtgcta       600
     taagatacct tctttaacct ttttggtgtt cgtgatcgtt ggctacgatc ggaggagtat       660
     caccgacgga acgttcgaca ggcggactag tacttctggg gagcccaaca actgggaggc       720
     gtgacgtcac actattacgg gacgagccag cttcaacgag acgatttacc tagaggattt       780
     gatcatcaac aaacaaggtc agttgtatcg aaccatctat ttcttgggga attgaataca       840
     ctgaaggcga atttcattca acatacaagg cctgttgtag acaggtacaa ggttagtacc       900
     tgtccaactg ctattacttc atacagtgct attttggatt ttttctcctt ttttggttgc       960
     tgggtttcag cttcttgtca aaaggagttt tgctgcaaca cggtctgcat tgctggttgc      1020
     actcttcaag atttttcaac aagcctcaat tcgaagtacg acaacgatca ttccaagttg      1080
     cgccatcata cgggggccga cgaaagctgc attagtttga atacaaggcc tatttgagac      1140
     aggcctcagg tgagtacctg tccagcagcc taattggagt tttgcagtgc ttcttggctc      1200
     gtttccattc tcatttccgg tcgtcatcgt tcgtacttcg atttgctgtg ctggtagtgg      1260
     ttgtgggaaa tgactgagaa gaagattaga gaaaaaatca agaagcggga gcgcattgtt      1320
     gcgtcattaa aacgacatgc gcaatttctg ggtagtttca acccagatat tcatacgggg      1380
     gaagttcagt ctcgattgga caaaattgag gcaaaatttg aggaatttga ggaggttcag      1440
     gaggaaattt cggagttgga cgtggaaggc atctatgagg aagactgcac cgtagcctat      1500
     gaggagttcg agaaattata ctatcgtcta cgagcggctt tgctggcgaa actaccaacg      1560
     gaggggactg ctgctgattt gaacaacacg ttagcgcgga atggtccacc tttgggtgcg      1620
     cacactggag ttcgcctacc tcaaatttct ttaccggagt tcgacggcga ctacaaagga      1680
     tggctatcgt tcaaatcaac atacgtgtcg ctgattcatg actccgggga gcttagcgat      1740
     gttcaaaagt ttcattattt gaaatcagct ctaaaggggg aagcggccaa acttatcgaa      1800
     tcgcttacgc tcaccaatga caactattcg atcgcttgga acacgatcac gaagcggtat      1860
     tccaacgaat acctgctgaa gaagaggcat ctacaggcgc tgatggagta cccgaaagtg      1920
     gagaaggagt cgtctacagc aatccatgct ctggtggatg aattcgagca gcgtttaaaa      1980
     attttgaagc agttaggaga gaagactgac gattggggtg ctatggtcgt ccattggatg      2040
     tgctccaagt tggatgcaaa tacactgcaa ctttgggaag accacgcagc gtctacgaag      2100
     gacccgacat tcacaatttt ggtgaatttt ctcgagaagc ggactagggt attggaggcg      2160
     gtttcatcga acgtcgaatt gaaaagcagt atgcagaagg tggaagtcaa gagacagaag      2220
     gtagtcgttc atgccgctac tgatggcgaa aaaagtggtt cggcttgctg ttgttgcgga      2280
     gagtcgcatt tcttgggacg atgcagcagg ttttcgaaaa tgacgctgaa ggagaaattg      2340
     cagttcgtca acagtaaacg cctttgcagt aattgtctga agtctggcca ctgggtacgc      2400
     gactgcacat caaagtttag ctgtccgtga ctgtgggaaa aagcataata cgctgattca      2460
     tccagggttt ccgttgagca gcagcggtgc tgtacacaac gatcatactg taggcaaacc      2520
     ggagaagaca cggaacgaaa aaccggtagc aaccaacgta gctactaacg agatggaatc      2580
     tgaagacgaa agcgatcaag gagcagttgg atcatacaac gtaggggcca agagtggcag      2640
     aatttcaaat gttctattat ctacggtcgt actagtcatt cgagaccagc atggaggaaa      2700
     acagatggct cgagcattgc tagacaacgg atcgcaagct aacatcatga gtgagcgatt      2760
     atgtcagatg ctgagcctca aacggaggac gataaacgtg ccaataagcg gtgttggtga      2820
     agcggaaaca cgagctagat tcctggtaaa cactactgtt agctctcggg tccaagactt      2880
     ttccgtcgga atggaatttc tagttcttca gaaggtaacg tcggaattgc catcagggca      2940
     catacctgtg ggacactgga aaattccaac tgacattcaa ttggccgacc cgaacttcaa      3000
     cgttagcaac cgaatcgatc ttctgattgg agcagagcat ttctaccggt tcttgtttga      3060
     aagagatacg aaaaggatca cgctaggtcc ggggctgccg atgctgatca atacagtatt      3120
     cggttggatt gttacgggga aagtttccga agtaaagagc aaagcagtta gctgttgcgt      3180
     agcgtctgct ccagatagtt tggaagccca attacacaaa ttttgggaaa tcgagagcaa      3240
     tgaggatcgg cctgcttggt cgaaagagga acaagatagc gaaaatcatt ttctacggac      3300
     gtttagtcgc acggaggagg gtcggtacgt cgtacgttta ccgaaacacg tgaatttcga      3360
     wcagatgctt ggagactcac gcgcgatggc tctatcgcga ttcaaaaaat tggaacggca      3420
     actaggatgg aatacggata agcgccttca gtacaatgca tttatgcaag aatatctgga      3480
     tctgggacac atgaggcagg tcagcgaaga ggagcttcta gaagaggcaa aaagccccag      3540
     aaagggctac tacttacccc atcacgctgt gctgaaggaa tccagcacta caacaaaggt      3600
     tcgtgttgtt ttcgacgggt cagccagcac ggatagtggc tactcgttga acgacgctct      3660
     tctaaaaggt ccagtcatcc aagatgagct ccttagcctg ctgcttcggt tccgaaagca      3720
     cgaagttgcg ctagtcgggg atgttgaaaa gatgtaccgg caggtacagg tacactccga      3780
     ggacaccgtt ttgcagcgca ttttctttcg gtttactcca gaagaacccg tacaggaatt      3840
     tgagttaacg acggtcacat atggattaaa accttcatca ttcttagcga ttcgtgctct      3900
     gcatcaactg gtgacagatg aaggagctga atacccggac gctactgatg caatagtgaa      3960
     cgatttttac gtagatgatt acatcggcgg agcatccagc gttgatgagg ccatccagct      4020
     acagaacaat ctcgatacgc tcatgaagaa gggtggattt gctttacgca agtggtgttc      4080
     caatcggcca gaagttttga agggtatacc agccgatcaa cttggcacta atttatctat      4140
     ttcctttgat ataaatccgg aggaaaaggt gaaaaccttg ggaattacct gggaacccgg      4200
     gacggatcag ttgcgattct tctacgatac macagatagc gagcaagctt ggacgaaaag      4260
     aaacatcctg tcgtcgatag cgaaactttt cgatccktta ggattgatat cgccaataat      4320
     agttacggcc aaaatgctga tgcaagagct tgctttgctt aatatagaat gggatacgcc      4380
     tgttcccgtc gacatcgaam akaagtggaa agmsttccac tcmcaaatgt acaaaatttc      4440
     mgaattgcga atcagccgat tcgcttttgc ttccaaatgg gttagcgttc agttccactg      4500
     cttcgctgac gcttccacct tagcttatgg tgcgtgctta tatgtacgga cgacagatgc      4560
     agttggaaat gtccggatag agctgctgtc ttcgaaatcg cgcgttgcac cgctcaagag      4620
     attgacgcta ccgcggctcg aactatgtgc agccaaggaa gctgcgcttc tacactcgaa      4680
     agtgactaaa tctctctcca ttgaaaatgt gcaatctttt ttctggtctg acagtacgat      4740
     cgtactacac tggctacgat ctccgcctaa tacttggcaa acctttgtcg ccaatagagt      4800
     ctcgaccatt caaatcacta ctcacgctca tttctggcgt cacgtagcag gaaaggaaaa      4860
     tcctgctgat ttagtatcgc gaggaatggc agtcgatgat tttctgaata gtcagctgtg      4920
     gaaagaagga cctccatggc tgcgtgacac cgaggatgca tggccctatt ccgatgaata      4980
     ctgtactccc tgcgaagaac acttggaaat tcgtaagaac gttcacacgg tcagagtcgc      5040
     cgaacctccc aacgagctat tcggcctgcg ttcatcattg ccttctttac ttcgtgtcgt      5100
     cgcttactgc cgtcgttttg cmcacaacag tagatacccg aacgacagag tggcttctgt      5160
     tgaattgact gctgatgaca taaaatcggc taagatggca ttaacccgca tggcacaggc      5220
     tgagcgattt ccggaagagc tcaaagattt acagcgacaa cagcatgttg acaataaatc      5280
     gagcttaaaa agactctgtc cattccttga tgaagatgga gtcattagag ttggaggtcg      5340
     tctgcgtctg tcaaacgaaa gctacacggt aaaacatccc gctgttttgc caaatcatca      5400
     cccattcacg gatctcgtga tacagttcgt ccattcgcag aactttcaca gcggtccaca      5460
     attaacattg gctgatataa ggcaggaatt ttggcccata cacggcaaac gcgttgtcaa      5520
     tgctgtgctt cgtaagtgtg ttcgatgttt tcgaaccaac ccaacgccta ttcaacaacc      5580
     catgggacaa ctaccggttg gtcgagttcg cccaggacga cccttcttga tcactggggt      5640
     tgactattgc gggcctttct ttttgaagtc ttcacgccga aataccgctc ctattaaggt      5700
     gtatatagca gtttttgtct gcttctcaac gaaggctatg cacctagaga tgtccagcga      5760
     tctatctact gcaagcttcc tctccgtttt gcgacgattc atcggctacc gaggaattcc      5820
     tgctgaaata cattcggata atgctaaaaa cttctctggg gcccgtaatg aattgaaggc      5880
     attatacgac ctgctcaatg atccactcag cttctccgtt atttgcaagg agctctctca      5940
     gcaaggtatt aaatggcact ttattccgcc gcgtgctccc aactttggag gattatggga      6000
     agctgccgta cgctctgtaa aaactgcgct taagaaagaa gtcggcttga aacagctgag      6060
     ctacgatcaa tttaccacgc ttctggtaca aatcaccgct acgctgaact cacgacctta      6120
     gtctacttta tcggacgacc cacggaaccc tcagcgccaa cttccgcgca tttgtgatag      6180
     gttcggccaa gaaagccctc cctgagccca atattatttc tattcccaca aacctccttg      6240
     acataccgca aatacaacaa atttctaaca tttttagtaa cgatggatgg camtagatcc      6300
     cgcacgcagc tacaaataca acgaataacc tgccttcgtc cccattcaca ttagcagtat      6360
     cgctgtgttg ccaaagacaa attaaatcag ttttcttggt aattaatgaa aattatcggc      6420
     ttacatccag gctcggatgg gatcgtacga gttgcgacgg tgaagacggc gactggagta      6480
     tacaagcggg cagtcaaccg tatttgtcca ctgcctaccg acgatgtggg tgtacgtact      6540
     acgaggtctt cagcacattt gcggattcgt aaagataaga tttaaaatcg aattgatcat      6600
     tacatttgtt gaagctagtt caagggggcc ggtaa                                 6635
//
ID   BEL-641_AA-LTR repbase;    DNA;    INV; 613 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-641_AA_;
KW   Pao_Bel_Ele8; BEL-641_AA-I; BEL-641_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-613
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 613 BP; 218 A; 96 C; 121 G; 178 T; 0 other;
     tgttcaccaa tcgaagaaag cgaactattt tgaatttaat tcaaactctt aaaacttaat        60
     actattatca atgaactaaa acttacagct aggaataaat aggttaaaac aaactattat       120
     acactccgcg aaacacaaca catgaaacat ttatataagt acacatgcag gtactgataa       180
     cactgataaa atgaccacac aacacagaga tagaacacga atgataaaaa ttatatgtgt       240
     aggtaataag ccgaaccgaa aagaagcttg tgtggctagg aaagcagttt gcctcattta       300
     gtagccaaca gattgctagg caataaagtt caattttgct ctgagattat taaaacataa       360
     attatttcgg ttccaataaa ctctgtttta ttgaagttct tagttcaagt ggtagttttg       420
     gtggttttgg tggaagaagt gcccgcgaat agtttttgac gaagttttga agagtttgtt       480
     attcggagtg gataagcggt gtaaaacaga acagcctcaa attgctgtta gatggactgt       540
     tatgcgcttg gtcgaagatt cggtgataag tgaattgaaa ccaaccctcg aaccgtggag       600
     ttttctatga aca                                                          613
//
ID   BEL-642_AA-I repbase;    DNA;    INV; 7229 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-642_AA_;
KW   BEL-642_AA-LTR; Pao_Bel_Ele132; BEL-642_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7229
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5091-5675] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(618..1982,1986..6056)
FT                 /product="BEL-642_AA-I_1p"
FT                 /translation="MSVNDDYRLLCKQERSLRISLENMKEFAHAHQAGADR
FT                 HDVDLRIAKLDEIWEKFVGVRLRIEMLTEDVGDGDISTDTEESEEAKLQRH
FT                 IRLQKQHDRDNARIIKDFENEVYQLKKAFFSLLQAGPSCVQQVQQYQNAAV
FT                 PQSKVKLPELKLPTFSGRMSDWVTFRDTYKNLIHNDNCLSDMDKFTYLRTS
FT                 LTGDALQEIASIEMSAVNYAIAWEALENAFENKKLLVMTYLDSLFALESLR
FT                 QENFESLSRLVNGFEKNLQMLTKIGEDTEGWSTLLQYMLCKRLHPTTLRQW
FT                 ESHYNSKEVPKYKDLIKFLKSHCSVLQSITPGKQFQAESRKPVRPSISHAG
FT                 VQSTSCCPFCGESAHSAFKCAKFSKMRIAERVDAVKKHSLCLNCLSSGHIA
FT                 RFCTRGSCFHCGQRHHSLLHANSSTTANSSTKSGQSNGNQPIKKPQGQNSQ
FT                 PPQAKPTPNGSTNTQPTQSGRTDPQNSTNASNAHSHTSATDCPSTSYHTAP
FT                 LSTTRHVPHTVLLSTAVVSLCDQFGNTILARALLDSGSQRCYMSEAISQKL
FT                 KFKRTREHLPIAGIGGARTASTKAVFAEVHSLVSKYVTNLKFHVLPRVTVD
FT                 LPTRSIDIRSWNVPKELILADPTFHESGAVDLIIGAEVYLELMIAERQIKL
FT                 GDSGPVLQNTLLGWIVSGGIPNDSITLPSVSACATERIEEELARFFELESC
FT                 RTTSTLSLEESACETHFEKTTKRDPSGRFIVQLPRKQFLVERLGDTQAIAT
FT                 RRFLALERRLDMDPAVKKMYIEFIDEYLRMQHMREVSPRELSTFPVTYFLP
FT                 HHAVLKPDSTTTKLRVVFDASCLSSSGVSLNEALMVGPVVQEDLTSITLRF
FT                 RLRKYAMTADIEKMYRMIKMHPLDHPLQCILWREESAKPIRFFVLTTVTYG
FT                 TSSAPYLATRCLKKLAEDEKANFPAATETIIYDFYVDDMLKSVDSVEEAGQ
FT                 LSRDLIHVLGTAGLTLRKWSSNSREVLDQIPPYLRDERSSLDLELSTPTVK
FT                 TLGIKWEPRLDIFRFTVPQWNAATEITKRIILSDFAKLFDPLGLVGPSLVP
FT                 AKVFLQDLWRTKCSWNDTLPDELQTWWREFRESLEGLTHLQVPRWIAFGSD
FT                 TISAELHMFCDASKKAYGACIYLRCTSFDGKVTSALLTAKSRVAPLEDLEK
FT                 KRKQTSIPRLELSSALTGAHLYEKVVQSIKITAQPYFWTDSMIVKCWIAAV
FT                 PSRWAMFVANRVSEIQHITRGGIWNHIAGLDNPADVLSRGMAPDQLKDYGM
FT                 WWQGPPWLCLDKASWPKTATINSDDLDPALLEERTTVSAPAQVVEPSPIFG
FT                 LRSSLQDLVRTVSLIRRFTYNCRNTSDRRIGFVTHEERAEALHQLLSLAQQ
FT                 ESFPEDLAALRRTGEVKSTSRLRKLAPRIVNGILLVGGRLQNANISAGRKH
FT                 PVILDNHHPLSILIAVHYHQKNLHAGQQLLVASMREKYWPLSARNLARKVI
FT                 HRCVRCFRARPTAHEQLMADLPAERVTPAPPFMRVGVDYCGPFYIQYPYRK
FT                 GGPIKCFVAVFVCLAVKAVHLEVVGDLTTQAFIAALRRFVSRRGRPEILMC
FT                 DNATNFVGARRELDELRKLFNNPDFIKAVTEETSWENINFKFIPAKSPNFG
FT                 GLWEAAVKSMKEHLKRTLGNTVLVSDEMATLVAQIEACLNSRPITPLSSDA
FT                 DDLEFLTPGHFLVGRPLTAMPEPSLLDINESRLSKWQRVQYFLQRIWNRWS
FT                 TQYLSNLHARTKWTRQRNNLFVGVMVLLCEDNVPPLRWRMGRVTEIHPGKD
FT                 GNIRVVKVRTKDGDFLRAISKVCVLPIQDNEGARSATREED"
XX
SQ   Sequence 7229 BP; 1870 A; 1797 C; 1772 G; 1759 T; 31 other;
     gtgcgtttaa gtccgggacc ggaacgaaca tttttggtcc gaatcgaacc ggatcgtcgg        60
     gaawcgcgma agtgmagtgg aaaaagktgc cgtcttctga sccgccgcgt ggtcgctgat       120
     tgttctccac gagggagaac aataggacac gggcgtcctc aacattgagt gtgctkctgc       180
     cwtcgtccat cwttaccckt tgcctatgcg gagagctgck gcggatcgag gmcgccwtcg       240
     gagctwccag gcgasaccgg acggatttgc caggacamca ggataagtac tgtgggcagg       300
     tttgtctgtg gcgcgggtct twgttgcatg tgagaccgcg gccgacggaa aktsaattga       360
     gccaacgtga attgaaattg agtgagmttc aataaaaaga ttmtttaatt gcttgcatga       420
     tcaaattgtg tcgtccataw cattttkcgc tgagctgagc cctgaccagt ccgccgtctc       480
     cmtwggtttg tccgcttcgt wggttggttt gcwttgtcck ttccccagtc aaaaccccca       540
     ttgtccagtc aaaccgcgtg gtcgatccga gtgtcgcgtt cgagtgaagt gcaagtgtga       600
     tacaatagtg ttcsattatg tcagtgaatg atgattaccg actgctgtgt aagcaggagc       660
     gttctctgcg gatttctctg gagaacatga aggagtttgc tcatgcccat caagcagggg       720
     ccgacagaca tgacgtcgat ctccgcatcg ccaaactgga tgaaatatgg gagaaatttg       780
     ttggtgtgcg actgaggatc gagatgctga ccgaagatgt tggagatggt gatatttcca       840
     ctgataccga ggagtcagag gaggccaagc tgcaacgtca catcaggttg cagaaacagc       900
     acgatcgtga taatgcgaga atcattaagg atttcgagaa cgaagtttac cagctgaaga       960
     aagccttttt cagtttactt caggctggtc caagctgcgt gcagcaggtt cagcagtacc      1020
     aaaatgcagc tgtgccgcag tctaaggtta agctccccga gctaaaactg cctaccttta      1080
     gcggaaggat gtcggattgg gttacattcc gtgacaccta caagaactta atccacaacg      1140
     acaattgcct ttccgacatg gataaattca cttatctcag aacctctctc acgggcgacg      1200
     cactgcaaga gatcgcatcg atcgagatgt ctgctgtcaa ttatgccatt gcgtgggagg      1260
     cattggaaaa tgcattcgag aataagaagc tgctggtaat gacgtatttg gattcgttat      1320
     ttgcactcga gtctcttcga caagaaaatt tcgaatcgtt gagtaggcta gtgaacggtt      1380
     ttgagaaaaa ccttcagatg ctcaccaaga ttggtgaaga cacggaaggt tggagcacgc      1440
     tgttgcagta catgctttgc aagcgtctgc atcccacaac attaaggcaa tgggagtcgc      1500
     attacaactc taaagaagtt cccaagtata aggacctgat taagtttttg aagagtcact      1560
     gttcggtgct gcagtctatc actcctggaa agcagttcca agctgaatcg aggaaacctg      1620
     tacgaccgtc gataagtcat gctggtgtcc aatcaacaag ttgctgtccg ttttgcggag      1680
     aatctgctca ctccgccttt aagtgtgcaa agttttccaa aatgcgaatt gcggaaaggg      1740
     ttgatgccgt gaagaaacac tcgctttgct tgaattgcct gtcatcggga cacatcgctc      1800
     gtttttgcac tcgaggatcg tgcttccatt gtggtcaacg tcaccactcg ttgcttcacg      1860
     cgaactcgtc gaccaccgcg aattcatcaa caaaatctgg acagtcaaat gggaatcaac      1920
     cgataaagaa accacaagga cagaactcgc aaccaccaca agctaagcca acaccaaacg      1980
     gtcastcaac aaacactcag cctacacaaa gtggacgcac agatccacaa aactccacca      2040
     atgcaagtaa tgctcattca cacacttccg ccacagactg ccccagtaca agttaccaca      2100
     ctgcacctct ctcaacaaca cgccatgttc cacacactgt tttgctctct accgctgtcg      2160
     taagcctttg cgatcagttc ggtaacacca tactcgctcg tgcgttgctg gactctgggt      2220
     ctcagcgatg ctacatgtct gaagccatct ctcaaaagct caagttcaaa cgaactcgtg      2280
     agcacctacc gatcgctggt atcggtgggg cgcgaactgc atccactaaa gcagttttcg      2340
     ctgaagttca ttcgctcgtt tcaaaatacg tgacaaacct taaatttcac gttttgcctc      2400
     gagtaactgt cgatctccca acaagaagca tcgatattcg atcctggaac gtcccgaagg      2460
     agttgatttt ggccgatcca acattccacg aatctggagc agtggatctg ataattggag      2520
     ctgaagttta tctagagctg atgatcgccg aacgtcaaat caagctaggc gattccggtc      2580
     cggtactgca gaacacgctg ctgggctgga tcgtgtccgg tggaattccg aatgattcaa      2640
     tcaccctgcc atccgtgtca gcatgcgcta ccgaaagaat tgaagaagag ttggcgcggt      2700
     tctttgagct ggaatcgtgt cgcaccacta gcacgctgtc tttggaggaa tcagcatgtg      2760
     aaacgcattt tgagaaaacg acgaaaagag atccaagcgg ccgattcatc gtccagttgc      2820
     cgaggaaaca gtttctggtt gagcgtctgg gagatacgca agccatcgcc actcgtcgat      2880
     tcttggcact cgagagaaga ttggacatgg atccagccgt gaagaaaatg tacatcgagt      2940
     tcatcgacga gtacctccgg atgcagcaca tgcgcgaggt ttcaccaaga gagttgagca      3000
     catttccagt cacgtacttt ttaccacatc atgcggtgct caagcccgac agcacgacta      3060
     ctaaattgcg tgtcgtgttc gatgcgtcat gcttgagttc ctctggagtt tcattgaatg      3120
     aagcgttaat ggtgggtcct gtagtccagg aggatctcac ctcaatcaca ttgcgttttc      3180
     gcctgcggaa gtacgcgatg acagccgaca tcgagaagat gtataggatg attaagatgc      3240
     accctctgga ccatccactg caatgcatat tgtggagaga agaatctgca aagccaattc      3300
     gattttttgt gctgactacc gtcacatacg gcacgtcatc tgcgccgtac ctagcaacgc      3360
     gctgcctgaa gaagttggcg gaggatgaaa aggctaactt tcctgctgcc actgagacaa      3420
     ttatctacga tttttatgtg gacgatatgc tgaagagcgt cgacagcgtt gaggaagcag      3480
     ggcagctttc aagagacctg attcacgttc tgggaacggc cggacttacg ctgaggaagt      3540
     ggagctccaa ttctcgagaa gtgctggatc agatcccgcc ttacttacga gatgaacgtt      3600
     cgtcattaga tctcgaactc tcaaccccca ccgtcaagac ccttggaatc aaatgggaac      3660
     ctcgattgga cattttccgg ttcactgtac ctcagtggaa cgctgctact gagattacta      3720
     agagaattat tctgtccgat ttcgcgaagc tcttcgatcc acttggtctg gttggaccta      3780
     gcttagttcc agctaaggtt tttctccagg acctttggag aacaaagtgt tcctggaacg      3840
     atactctacc ggacgagctt caaacttggt ggagagaatt tcgagaaagt ttagagggcc      3900
     tcactcatct ccaagtccct cgttggattg cgtttggaag cgacacaata tccgccgaac      3960
     tccacatgtt ctgcgatgcg tccaagaagg cgtatggtgc ctgcatttat ctgcgatgca      4020
     catcgttcga cgggaaggtt acatcagcac tgctgacggc aaaatcccga gtggctccac      4080
     tcgaagacct agaaaagaag cgaaaacaaa catctattcc tcgcttagaa ttatcgtctg      4140
     cactcacagg tgcacatttg tacgaaaagg tcgtgcaaag cataaagatc acggcacaac      4200
     cgtatttttg gactgactca atgatcgtca aatgctggat tgctgctgtt ccgtcgcgct      4260
     gggctatgtt cgtggccaac agagtatccg agatccagca catcacccgt ggaggtatct      4320
     ggaatcatat cgcgggacta gacaatcctg cggacgttct gtcaagggga atggctccag      4380
     atcagctaaa ggactacgga atgtggtggc aaggaccacc ttggctgtgc ttggacaaag      4440
     cttcctggcc aaaaactgca accatcaact ctgacgattt agatcctgcg ttactcgaag      4500
     aaagaacaac ggtatcagct ccagctcaag ttgtcgaacc cagcccgatc tttggtctac      4560
     gatcctcact tcaagatcta gttcgcactg tgtcccttat tcggagattc acgtacaact      4620
     gtagaaacac tagcgatcgt agaattggct tcgtaacgca cgaggaacga gcagaagcct      4680
     tgcatcagct tctctcacta gcgcaacaag agagcttccc agaagatctt gcagcgctgc      4740
     gcagaactgg cgaagttaag tcaacgtcaa ggctgaggaa gctagctcca cgcatagtga      4800
     atggaatcct cctggtcggt ggccgattgc agaatgccaa catttcagca gggcggaagc      4860
     atcctgtcat cctagacaat catcacccac tatcgatcct tatcgccgtt cactatcatc      4920
     agaagaatct gcatgctgga caacaactcc tggtggccag tatgcgggaa aagtattggc      4980
     cattgtcagc acgtaacctg gctcggaagg tcattcatcg ttgcgtcaga tgttttcgcg      5040
     cacgaccgac ggctcacgag caactcatgg cggacttacc agcagaacgt gtcactccag      5100
     ctccaccgtt catgcgcgta ggagtggact actgtggtcc gttttatatt cagtatccct      5160
     atcgcaaggg cggtccaata aaatgtttcg tcgcagtatt tgtgtgcctt gctgtgaagg      5220
     ctgttcattt ggaggtggtt ggagacctca cgactcaagc cttcatcgcg gcattgagaa      5280
     ggttcgtctc tcgccgtggt cgacccgaaa ttctgatgtg cgacaacgca acaaatttcg      5340
     tcggagcacg acgtgaatta gatgagcttc gtaaattgtt caacaatcca gatttcatca      5400
     aggcggttac tgaggagaca tcctgggaga acatcaactt caaattcatc cctgcgaagt      5460
     cgcccaactt cggaggcctt tgggaggccg ccgtgaagtc gatgaaggaa cacctaaagc      5520
     gtaccctagg caacacagtt ctcgtgtcgg atgagatggc cactcttgtg gcccaaattg      5580
     aagcatgcct caattcgagg ccaattacgc cactttcaag cgatgctgat gacctggaat      5640
     tcctaacccc cgggcacttt ctggtgggta ggccacttac agcaatgccg gaaccatctc      5700
     tgctagacat caacgaatcg aggctttcaa aatggcagcg cgtgcagtac ttcctccaac      5760
     gcatttggaa tcgctggtca acccagtatt tgtcgaactt gcacgctcgt acgaaatgga      5820
     ccagacagcg gaataatctt ttcgtcggcg tcatggtgct gctctgcgag gacaacgtgc      5880
     cgcctctgag gtggcggatg ggcagagtca ccgagattca cccagggaag gacggcaaca      5940
     tccgtgtcgt caaagtccgt acgaaggacg gagactttct gcgagcaata tccaaggttt      6000
     gtgtcctgcc aatacaggac aacgaaggag cgcgatctgc aacgcgcgaa gaggattgaa      6060
     tccttttcca taaagcgccg tccgggcgct gcggaggcct tcgggtctcc gcgttccagt      6120
     taagtttttg ttttttacat tacgatcaaa aagctcaggg aatgttctgt cctccatagt      6180
     tcatccacgg cggccggagc cgtccacccg atttcgtgaa tttccgtatg ccaatccatc      6240
     gatttctgtc catccgagaa gttcatcaac taaacaaaca tcaactcaat tcctgtaatg      6300
     ctcaccaaag aagttgttgc gtcaagtatt tcgtgggggt tgaggaatcc ccacacaaag      6360
     ttacgtgttc tgtattttgt tcattcattc gtgcaatcaa acaccattcc gtttgatcag      6420
     cagggttttg tggagaagat catcgctact gggttaatcc gacgaacccc tacgtctgca      6480
     gtgagcccga gatgactaga gctgggtttc cttcggttcg catcgagcat catgcgacaa      6540
     acgccagtgc catgggcaac attcctacac tcgggacaag tcagcagggg tgtcgacggc      6600
     gccttggcgc ctgcggaggc ggacggcctc cgcaacccag ggaaktcatt ctatatttct      6660
     attttattgt taaaaaatcg cctctcatct gtttcatagc tacctatcga ggatccctca      6720
     gccgaggccg aagtgtccca ccggagacga gtcgtggaga aatccgtgga cggtcctcac      6780
     gattgatcaa tagatactac gcatgcctag ccgaatacga aaaatgacga gacgacgaag      6840
     atcagcagta acagaaaatc ccacaccagt agtcgataac tgattctaga aagtaaccag      6900
     cgaaccttat gtatagatat ctttatttct gtcaacgcac tagaatataa twagctatta      6960
     gtttgttgaa attaggtcat ttcaaggcgg ccggtatgtt tgcgccgatc gcccactgta      7020
     ttgcgctgat gcgatacaga tcatatagta gataactaga ttttgcattt caaccactac      7080
     tactacaaga tcactaaatt aaccattagt gtccgagtta gaagatatag ctgctctact      7140
     tttccccaag caaaatgtga acctatttca tgctataccg atcgcttcac gatcgccgat      7200
     aggcgcgacc agagataacg atcggacag                                        7229
//
ID   BEL-642_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-642_AA_;
KW   Pao_Bel_Ele132; BEL-642_AA-I; BEL-642_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 221 BP; 66 A; 48 C; 45 G; 57 T; 5 other;
     tgaaaaacat cgcagctggt cagtagtaag gtcagcaaat ttgtatgcta tcagtctcaa        60
     ataaaccatc aaacgataca gwccgttatt caaccacacg tcgcgagtcg caatttgtaa       120
     tmttgtgaag gcaaattaag wccaataaat tacgwtccgt tcgtcaaagt acgttcgcgg       180
     gtgttgcawg ttctctacgc gtgatccgac ggctaaattc a                           221
//
ID   BEL-643_AA-I repbase;    DNA;    INV; 5946 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-643_AA_;
KW   BEL-643_AA-LTR; Pao_Bel_Ele220; BEL-643_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5946
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5000-5548] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..5946
FT                 /product="BEL-643_AA-I_1p"
FT                 /translation="MSQSDLTSNLSDPEDLDLTTTPCAACHQLSTTNEPMV
FT                 GCDACSRWFHYRCVGVTEAVKKEKRWFCSESACQDAAKKSKRSTGKRNTGR
FT                 SSTKSDQAQGITPEQKLKSMEEEFAKKMEELEYERVFREKEMEFQRALKEK
FT                 KMQMENELREKELAQEKVLLDRALEDKTEHFEKMKTMRMSYQKCMDGLDEE
FT                 MLHMRKPKPELFGNEARKTIQPGTSNEKQHPVRKLNMQGGGQNADSKGIQP
FT                 SKMQNQANPSNGGEECYDEDDEDEEIEEEAADGEAVERADEEDYQGEEVAD
FT                 VIGAVGGHNVDPYGLGQQRIGPTKSQLAARSAVSKRLPVFTGKSEEWPLFY
FT                 GTYVASSQACGFSDVENLVRLQDSLKGPALESVRGQLILPKSVPKIIEKLR
FT                 QLYGRPELILQSHLERIRKLEPPKPEKLASFVPFGNAIEQLCEHLEAAGLR
FT                 QHMINPILIQDLVDKLPATDKREWVRFKRTKRQVTLRTFTDFVSRIVEEAC
FT                 EANVCMDQKQEPKIMRGNRLGSGTTKGRNMEKGMLLNHDASNSTTGAPAER
FT                 TTLKACKACQRNDHRLRFCEDFRRMTYADRMKIVTRWKLCNVCLNDHGNAT
FT                 CKFKIRCDVSGCQQRHNSLLHPVGGVIGTSAHIRTTSSILFRILPVRLFCG
FT                 EKTITVLAFLDEGASVTLIERQFVDQLGIVGVPERLTITWTADISREEKGA
FT                 KRVCVWTSGIGNNEQLLLNNVYTVENLRLPMQSLDAAVLSEQYKHLKNLPI
FT                 TSYSDARPGMMIGLNNLHSFAPIEVKHGAPGEPIAVRCKLGWTVYGPRKEG
FT                 ASSQNAVLGFHVGVSNEDLHDLIKTHYALEESVMGVKMESPEDERALDILR
FT                 RTTKRSGNRFETGLLWKSDQVSFPNSYPMAVKRLIQLERKLGQKPLLYENV
FT                 RKQILEYQQKGYAHLASEEELNATDPNKVWYLPLNVVLNPRKPDKIRLVWD
FT                 AAATVNGVSLNSQLLTGPDLLTPLISVVTRFREHRIAFGADIREMYHQLRI
FT                 IEADKQAQRFVFRMSKEGPINIYVMDVATFGSTCSPCSAQYVKNQNALEYA
FT                 EEYPAAAAAIIDGHYVDDYFDSVDTIDEAIERAKEVSFVHAQGGFELRNWV
FT                 SNSPDVLRSLGEVTETKPIHLGRVKETGSERVLGIIWNPDHDTFSFSSEHR
FT                 EHLQVYLSGIKMPTKRIVLSCVMGFFDPLGLLAVFTVHGKILVQDLWRTGC
FT                 AWDDTVNEDCWKKWKRWIGLLPEVEAIRIQRCYFGEVPWSSVESVELHIFT
FT                 DASELAYGCVGYLRTVVEGFVRCCLIMSRSKVAPLKRQSIPRLELMGAVMG
FT                 ARMLHSIISTHSIKFQRYVLWSDSQTVLSWISSDQHKFKQFVAFRIGEVLE
FT                 LTRTTDWRWIPSKLNAADALTKWGSGPPLESDGSWFTGPRFLLDPEEKWPS
FT                 QAEPAEKTEEETKEETRAFILYHRASLVEEVIDSERFSQWTRLLRSTATVL
FT                 RFIDNCKRKKTGQPLLTSKATVNQLSMIRAKRLTICQPLKQEELVQAENVL
FT                 WRLVQSQSFADEVAILLKNNARSANQPPISLEKSSMLYKLTPVLDANGVIR
FT                 MGGRMEASRVLPFDMKYPIILSRTHDVTRKLILHYHERFGHAYQETVVNEL
FT                 RQRFHIPNLRATIGHVVRGCIKCKVMRSRPRVPMMGPLPVQRISPQLRPFC
FT                 AVGVDYLGPIEVTVGRRSEKRWIALFTCLTVRAVHLEIAYSLSSQSCLMAI
FT                 RRFICRRGRPEEFFSDNGTNFTGASKELLKQIDGDCAEAVTSSATKWNFNP
FT                 PGAPHMGGIWERMVKSVKEAMTVLNDGRKLTDEILTTTMSEAEDMINTRPL
FT                 TYRSLEPAETEAITPNHFLRGAVRGVDVNQDGPTELAEALRNMYKRSQYLA
FT                 DQMWERWYKEYLPTINQRTKWFDDPKALQIGDLVFVMDGKHRKNWTRGVVE
FT                 EVFAGKDGRIRQANVRTSKGVYRRATANLAVLEIQDGKFGSSVMPEPMFTG
FT                 WGT"
XX
SQ   Sequence 5946 BP; 1735 A; 1275 C; 1601 G; 1335 T; 0 other;
     aactcaaaaa agtatgagtc aatcggatct aacctcaaat ctctccgatc ctgaagattt        60
     ggatctcacg acgactcctt gtgcggcctg ccaccagttg tcaacaacaa atgaacccat       120
     ggtcggatgc gatgcgtgta gccggtggtt ccactatcgg tgtgttggag tgactgaggc       180
     cgtaaaaaag gagaaacgat ggttctgttc ggaatctgcc tgccaagacg cagcaaagaa       240
     atcaaaaaga tccaccggca aaaggaatac cgggcgttct tctacaaaat cagaccaggc       300
     ccaagggatc accccggagc aaaagctgaa atccatggag gaggaattcg cgaagaaaat       360
     ggaagagctg gagtacgaga gagtattccg tgagaaggaa atggagttcc agcgcgcgct       420
     taaggagaaa aagatgcaga tggaaaatga actgcgcgaa aaggaattgg cccaggaaaa       480
     ggtcttactc gaccgagctc tggaggataa aacggaacac ttcgagaaaa tgaaaacgat       540
     gcggatgtcc taccagaagt gcatggatgg attggacgaa gaaatgttgc atatgcgaaa       600
     gcccaagcca gaactgtttg gcaatgaagc tagaaagacg attcaacccg gaacttctaa       660
     cgaaaagcaa cacccggtac gtaagctgaa tatgcaaggt ggtggacaga atgctgattc       720
     gaagggcata caaccgtcga aaatgcagaa ccaggctaat ccgtcgaacg gcggagaaga       780
     gtgttacgat gaggacgacg aagatgaaga aatcgaagaa gaagcggccg atggtgaagc       840
     agtggaaagg gccgacgaag aagactacca aggtgaagaa gtagcagatg tgataggtgc       900
     cgtaggaggc cataatgtag atccatacgg gctggggcag cagcgtattg gccctactaa       960
     aagtcagctg gcagcacgaa gtgctgtttc gaagagactg ccggtgttca ccggaaaatc      1020
     ggaagagtgg ccacttttct atggaacgta tgtagcatca agtcaagcat gtggattcag      1080
     cgacgtggag aatcttgtga gacttcaaga cagtttgaag ggaccagctc tcgaaagcgt      1140
     gcgcggtcaa ttgatacttc cgaaatctgt gccaaagatt atagaaaagc ttcgacaact      1200
     ctatggacgt ccggaactga tcctccaaag tcatctcgag cggattcgaa agttagaacc      1260
     tccgaagccg gagaagctgg catcgtttgt tcccttcgga aacgccatag aacaactatg      1320
     cgagcaccta gaagctgcgg gtttgcggca gcatatgatc aatccgatcc tgatacaaga      1380
     tttggttgat aagctcccag caaccgataa acgggagtgg gttcggttca aaagaacaaa      1440
     gagacaggtg acgttgagaa cgtttaccga tttcgtttcg cgcatcgtag aagaagcatg      1500
     tgaagcaaat gtttgcatgg atcagaagca agagccgaag ataatgcgag gaaaccgcct      1560
     tggcagcgga actacaaaag gcagaaacat ggaaaagggc atgttgctga atcacgacgc      1620
     ttcaaatagt accaccgggg ctccagccga gaggacgacg ttaaaagcat gtaaggcatg      1680
     ccagcgcaac gatcaccgcc ttagattttg tgaggatttt cgcagaatga cctatgcaga      1740
     tcgaatgaaa atcgtgacta ggtggaaatt gtgcaacgtc tgtttaaatg accatggaaa      1800
     cgcaacctgc aaattcaaga tccgctgtga cgtcagcggc tgccaacaac gccacaactc      1860
     gctgctccac cctgtcggcg gcgttatcgg gacgagtgcg cacattcgaa caacaagctc      1920
     aattctcttc cgaatccttc cagtgcgact gttttgcgga gaaaaaacga tcactgtcct      1980
     agcctttctg gacgagggtg cctcagttac tttaatcgag cggcagttcg tggatcaatt      2040
     aggcattgtg ggagttcctg agcggttgac aattacttgg acggccgata tatctcgcga      2100
     ggaaaaaggt gcaaaacgcg tttgtgtatg gacatcgggg attggtaaca acgagcaact      2160
     tttgctgaac aatgtgtaca ccgtagaaaa cctacgtctc ccaatgcaat cgctggatgc      2220
     agcggtatta tcggagcagt acaagcattt gaagaatctt cctatcactt cgtacagcga      2280
     cgctagaccc ggaatgatga tcggtctcaa caacctccat tcattcgcgc cgattgaagt      2340
     gaaacatggt gctcctggag aaccgattgc ggtacgttgc aaacttggat ggacggtcta      2400
     tggaccaagg aaggaaggcg catccagtca gaacgcagtt ctaggtttcc atgtaggggt      2460
     cagcaatgaa gacttgcatg atttaattaa gacacactac gcgttagaag agtctgtgat      2520
     gggtgtgaaa atggagtcac cagaagacga aagagccctt gatattctgc gacgaaccac      2580
     caaacgaagc gggaatcggt tcgaaactgg tctactttgg aaaagcgatc aagtgagttt      2640
     tcctaacagc tatccaatgg cagtcaaaag gctgatacag ctggaacgga agttgggtca      2700
     gaagccattg ctttatgaga acgtacgtaa gcaaatactg gaataccaac aaaaaggcta      2760
     cgctcactta gcatcggagg aggagcttaa tgctactgat cccaacaaag tttggtatct      2820
     accgctcaac gttgtcctaa atccacgtaa gccggacaaa attcgtttgg tctgggatgc      2880
     tgccgcgact gtcaatggag tatccctaaa ctcgcagttg ttaacaggac cggatctgtt      2940
     gactccgttg atttccgtgg ttactaggtt ccgagaacac cggatcgctt tcggcgcaga      3000
     catccgcgaa atgtatcacc agttgcgaat cattgaagct gacaaacaag cacagcgttt      3060
     tgtgttccgg atgagtaaag aaggccccat taacatctat gttatggacg tggccacttt      3120
     tgggtcgaca tgctcgccat gttcggccca atacgtcaaa aaccagaatg cactggagta      3180
     tgccgaagaa tatccagcag cagcagcggc aattattgat ggacattatg tggacgacta      3240
     tttcgatagc gttgacacca tcgacgaggc gattgaacga gcgaaagaag tcagcttcgt      3300
     ccatgcacaa ggtgggtttg aactcagaaa ctgggtttca aattcgccag atgtacttcg      3360
     cagccttgga gaagtgacgg aaactaaacc aatacacctt ggtcgagtga aggaaaccgg      3420
     tagcgaaaga gttcttggga tcatatggaa tccagaccac gatacgtttt cattttcgtc      3480
     ggagcatcgt gaacatcttc aagtgtactt gagcggtata aaaatgccaa cgaaaagaat      3540
     agtcctcagt tgcgtcatgg gattttttga tcctcttggt ctgctggcag ttttcacagt      3600
     ccatggcaaa atcctcgtac aggacctatg gcgaacgggt tgtgcttggg acgatacggt      3660
     gaatgaagac tgttggaaaa aatggaaacg ctggatcggg cttcttccgg aagtggaagc      3720
     aatacgcatc caacgctgct acttcggaga ggtaccctgg tcgtctgtcg aatcagtaga      3780
     gctgcatata ttcacggacg ccagtgaact tgcgtatggc tgtgtgggat acctgcgaac      3840
     ggtcgtcgaa ggatttgttc gatgttgctt gataatgtct cgctctaaag tagcgccgct      3900
     taaacgacaa tcaattcccc ggctggagct aatgggtgcc gtgatgggcg cgagaatgct      3960
     gcactcgatt attagcactc actccataaa atttcaacgg tacgtcctat ggtctgactc      4020
     gcaaaccgtg ctaagttgga tatcctctga tcaacacaaa tttaagcaat tcgttgcttt      4080
     tcgtatcggg gaagttttag aattgacaag aactactgac tggcgttgga tcccgtcgaa      4140
     attgaacgca gcggatgcct tgacgaagtg gggaagtggt ccgcctttgg aaagcgacgg      4200
     ttcctggttc accggtccta gatttctgct cgatcctgaa gaaaagtggc cctctcaagc      4260
     agaaccagcc gagaagactg aggaagagac aaaagaagaa acgcgcgctt tcatactata      4320
     ccatcgagcg tcgttggtgg aggaagttat cgacagtgaa agattttctc aatggacacg      4380
     acttctgcgg agtacggcaa ctgtgctgcg gttcatagac aactgcaaac ggaagaagac      4440
     cggccaaccg ttgttgacgt cgaaggctac ggtgaatcaa ctgtccatga ttagagcgaa      4500
     gagattgacg atttgccaac cactgaaaca agaagaattg gtgcaggctg aaaatgttct      4560
     gtggaggctg gtacagagcc agagctttgc agacgaggtg gcgatactac tgaaaaataa      4620
     tgcaaggagc gccaaccagc caccgatttc actcgaaaaa tcaagtatgt tgtacaaact      4680
     gacacctgta ttagatgcaa atggagtcat taggatgggt ggtaggatgg aagcttcaag      4740
     ggtcctgcca tttgacatga agtacccaat cattctctct agaacccacg acgtcacacg      4800
     taagttgata ctacattatc atgaaaggtt tgggcacgct tatcaggaaa ctgtcgtaaa      4860
     tgaattgcgg caaaggtttc acatccctaa tttacgcgct acgatcggtc atgtcgtacg      4920
     agggtgcatc aaatgtaaag ttatgcgcag tcgtcctcgt gttcctatga tgggccctct      4980
     gcctgttcaa cgaatttcac cgcaattacg tccattctgc gccgtaggag tggattatct      5040
     aggccctatt gaggtaactg ttggccgaag atctgaaaag aggtggatag cactttttac      5100
     gtgtttgact gtcagagcag ttcatttaga aattgcttat tctctttcgt cgcaatcctg      5160
     tctgatggca attagaagat tcatctgtag acgaggacgg cccgaggaat ttttttctga      5220
     caacgggacg aattttacgg gagcgagcaa ggagttgctg aagcaaatcg atggtgattg      5280
     cgctgaagca gtgaccagtt ccgcaacgaa gtggaatttc aatccgcccg gtgcgccaca      5340
     tatgggtgga atctgggaga ggatggtaaa gtcggtcaag gaagcgatga ctgtgctgaa      5400
     tgacggaaga aagcttaccg acgaaatcct aacgacaacg atgagtgaag ctgaagacat      5460
     gataaacacg cgcccattaa cctacagatc actagaacct gcggagacgg aagccataac      5520
     tcctaatcat tttctacggg gggctgtacg tggcgtagac gttaatcagg atggtccgac      5580
     ggagctagct gaagcgttga ggaacatgta taagcggtca caatatttag cagatcaaat      5640
     gtgggagcga tggtataaag agtacctgcc tactataaat caacgcacca agtggttcga      5700
     cgatccgaag gctcttcaaa ttggtgacct cgtattcgta atggacggga aacaccggaa      5760
     gaattggact agaggagttg ttgaagaagt gtttgctggg aaagacggac gaatcaggca      5820
     ggcgaatgta agaacgtcca aaggagtgta tcgtcgagcg acagcgaact tggcggtgct      5880
     ggaaatacag gacggtaaat tcgggtcgtc agttatgccg gaaccgatgt ttacgggctg      5940
     gggaac                                                                 5946
//
ID   BEL-643_AA-LTR repbase;    DNA;    INV; 615 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-643_AA_;
KW   Pao_Bel_Ele220; BEL-643_AA-I; BEL-643_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-615
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 615 BP; 267 A; 72 C; 122 G; 154 T; 0 other;
     tgtcaacacc gctgggcagt tataacgggg tgccggaaag ccaaaaacgc aaagtgacag        60
     agctagacag aagtttagat aaggggaaga ataaaaaaac ataaacaaac ttttcagagt       120
     gcaggaaaac gtgaattata aaagttgtcc agtttattct tgaaaaatag ttgaaatctg       180
     cggatgtaca gtaaagtttg ataaagttga ttggcctgta agtaaataaa attatcctga       240
     aatgaaatta aaatgaaaat aatataaata atgtttgtga tgatagattg atggttaaac       300
     agaagcgatt tgtgaagcaa atgaagtttc ggacagattt gagaaattaa gagtaaaagt       360
     tgtaatcggg aaatcgtaag taattacaaa acaaacaata aaataacact aacgaagaaa       420
     atttgttaca aataggaaac aatctgcaca ttaggattga aggtagagag cacgagggtt       480
     aaaaaaaagg aaactacttt gtgagtatta aaatcaacaa acatttatac aaataataac       540
     aaaaataaaa tattatagtt tgagctgacc aaaaaactgg agtctgcttc aaattcagtt       600
     cctgaagtcc gaaca                                                        615
//
ID   BEL-644_AA-I repbase;    DNA;    INV; 5940 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-644_AA_;
KW   BEL-644_AA-LTR; ao_Bel_Ele11; BEL-644_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5940
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4985-5542] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..5938
FT                 /product="BEL-644_AA-I_1p"
FT                 /translation="MATGGTPSPAESSCANCDRPNTVDDLVQCDRCKAWWH
FT                 MSCAGVTHSVEGRAWNCSKCVSSTGSTGSVLSVPSSSRSRSSTKSKRAKLV
FT                 LQMLQEEQDMRMKQLKEQQDMEKSFLERKYALIQAALEEEEQEDGVSVRSR
FT                 SSHRSNVRKTQQWVNELGEANEDTAAALPKIADPAPDPQKKGAIPKHSRRL
FT                 DFTESTPQNICKDKEEVAIEQIGHNDLPESIPLRAQHGEQQVQAAAPPPWP
FT                 NSFALDLQKEKDASRRQNLRRVEYPETASQWFDVRPSNSGKLDPKPPHPGK
FT                 SDLQTSTLPTHANDETQLSSIEHLTKQFGLVSVENMNLPDNINAFTPTPSQ
FT                 LAARQVMPRDLPVFSGSPADWPVYISNFMNSTLACGYSPAENLIRLQRSLK
FT                 GPALEAVRSRLLLPESVPHIIDTLRLLYGRPELLINALIEKVHSVLTPKAE
FT                 KLESLIDFGMAVQSLSDHLEAANQKAHLSNPSLLIELVDKLPVHMKMEWVK
FT                 FVENKGEVNLKVFGEFMSGIVKSASQVTLYTGMASRVKKSEVEDKWKQKRV
FT                 AVHSHQLESPPASSGDGSDKACPACRQKNHRLKDCGVFRSYSIEGRSRFVQ
FT                 QHGICRNCLNAHGRRACRNSGVCGVNACPYRHHQLLHFPRSNVSAVENHVH
FT                 REIHPSLYFRIIPVTICGGGRSIEIFAFLDDGSQLTLIEEGLVRQLGVEGM
FT                 ELPLCLKWTGNMTRTENGSRAVSLSITTDDKRLFELKEVRTVKSLTLPSQT
FT                 VDYDYLATKYSHLRGIPMKSYSAAVPRLLLGVDNLRLTVPLKTREGKINEP
FT                 VAVKTRLGWCIYGGQAQSVTASLNYHYCECSADQALHGLVKEFFAAEDVGT
FT                 RSPPPIVSEDDRRASELLETTTKRTGSRFETGLLWRFDNFKLPESYGMALK
FT                 RLECLEKRMEKQPELRANIAKQINEYVAKGYVHRATEEELRFADSKRVWYL
FT                 PLGVVFNPKKPNKVRLIWDAAAKSHGVSLNDMLLKGPDQLTSLPAVLFRFR
FT                 QFAIAVSADIAEMFHQIGIVEGDRHAQRFLWREDPFTAPEVFLMNVATFGS
FT                 TCSPASAQFVKNKNALEFRQQYPRAVQSIVKNHYVDDLLESFETEEEAAKV
FT                 IQEVRMIHAHGGFNIRNFQSNSPVVLDSVGEKSASNPCSLDLHQAERSERV
FT                 LGLLWTPHEDMLGFSTIMPDEIQKVISTGVAPTKRQVLKCLMSFYDPLGLL
FT                 ALFTVQGKIILQAIWRSNTQWDQQIGAVIRNRWQQWIQILVDLQHLHFPRC
FT                 YFDQATLKYYQHVQLHIFVDASEEAYAAVAFFRIVDPQGRVCCSLVAAKTK
FT                 VAPIKPISIPRLELQAAVLGVRLMQWIVEGHSIRIEKKVFWTDSSTVLSWI
FT                 KSDKRRYKQFVAVRVGEILTETNVEEWRYVPSKKNIADAATKWGKGPDLNP
FT                 DGVWFKGPTFLKDIESKWPVTPKLKEDDVEVRPIFVHQAVPVVKLVIDLER
FT                 FSNWNRVLRTTAYLLRFISRSRKRTVPQSTYLSQEELAAAWRYLICAVQWD
FT                 SYPDEMVTLTNNLRNPSGQMRALDKTSSLYQLSPMLDDCGMLRVDSRIQAA
FT                 RNVLNDTKLPIILPRKHKLTHLIIESFHRKYLHGSPETVVNEIRQLYYIPK
FT                 LRTMVRLFTKECQLCKIKRAQPQIPRMAPLPSARLASFIRPFSYVGLDLFG
FT                 PLLVKLGRSNAKRWIALFTCLTIRAVHVEVVYSLSTDSCVMSVRRFVSRRG
FT                 APVEIHSDNGTNFRGADRLLREQIQNINEAMAETFTNTTTKWVFIPPSAPH
FT                 MGGSWERMVRSVKVAMEAANGGRRLDDEGLITLAVEAEGIVNSRPLTYLPL
FT                 DSEEAEALTPNHFILGSSSGVRQPAMKPADEAVALRNSWGQIQVQTDVFWK
FT                 RWTREYLPTLTRRVKWFGEVKPIAVGDLVLVVEETRRNGWTRGRVCEVYKG
FT                 QDGRIRQAMVQTSGGLIRRPVSKLAILDVAQVGKTGPGTSGDQCYGEE"
XX
SQ   Sequence 5940 BP; 1715 A; 1308 C; 1512 G; 1405 T; 0 other;
     aatcttcaag aaattcgcta gtatggcaac aggaggaaca ccttcgcctg ctgaaagcag        60
     ttgtgcgaac tgcgatcgac cgaatactgt ggacgatctg gtccaatgcg atcggtgtaa       120
     ggcttggtgg cacatgtcat gtgcaggagt tacacactcg gtggaaggtc gagcatggaa       180
     ttgcagtaaa tgtgtttcat caactggttc tactggatct gttttgtcag tacccagcag       240
     ttccagatcc cgttcttcga cgaaatcaaa acgtgcgaag ttggttctac agatgcttca       300
     agaggagcag gatatgagaa tgaagcagct aaaggagcaa caagatatgg agaagagttt       360
     tctggagcgg aagtatgcac tcatccaagc cgcattggag gaagaggaac aagaggatgg       420
     cgtcagtgtt agaagccgtt caagccaccg aagtaacgtg agaaaaacgc agcagtgggt       480
     gaacgagctt ggcgaagcaa atgaggatac tgcagcagca ttgccgaaaa tagcagatcc       540
     agctcctgat ccgcagaaga aaggtgcaat cccgaagcat tcacgacgac tagattttac       600
     agaatcaaca ccccagaata tctgtaaaga taaggaagaa gtggccatcg agcagattgg       660
     acacaacgat ttacccgaaa gtatcccact gagagcccag cacggtgagc agcaggttca       720
     agcagccgcc cctcctccgt ggccaaattc gttcgcttta gatctgcaga aggagaagga       780
     tgcaagcagg aggcagaatc tacgtcgtgt ggaatatcct gagacagcgt cacaatggtt       840
     tgatgtaaga ccgtccaact caggtaaact agaccctaag ccgccacatc caggtaagtc       900
     cgatcttcaa acatctacat taccaacgca tgctaacgat gagacccaac tgagttcaat       960
     cgagcacctt accaaacaat ttgggctcgt ttctgttgaa aatatgaacc tgccggataa      1020
     tattaatgca tttactccta cgccttcgca attggcggcg aggcaagtaa tgccccgaga      1080
     cctccccgtt ttttctggca gtccagctga ctggccagta tatatcagta actttatgaa      1140
     ttctacgctg gcgtgtggct acagtcccgc cgaaaattta atcagactac aacgctctct      1200
     gaaaggtcca gccctggaag cggttcgcag tcgtctcctt ctccccgaat cagtacctca      1260
     tataattgat acgctccgct tactgtacgg gcgcccagag cttttgataa atgcgctcat      1320
     cgaaaaggtc cactccgtcc tcacgccgaa agcagagaaa ttagaatctc tcatcgactt      1380
     cgggatggca gttcagagct tgagcgacca ccttgaagct gcaaatcaaa aggctcatct      1440
     gtcaaacccg tcgttgttaa tcgaactagt cgacaaattg ccagtgcaca tgaagatgga      1500
     gtgggtgaag tttgttgaaa ataaaggtga agtgaacttg aaagtatttg gtgaatttat      1560
     gagtggaata gtgaagtcag cgagtcaagt tacgctctac acgggaatgg caagcagagt      1620
     gaagaaaagc gaagttgagg acaagtggaa gcagaagcgt gtagcagttc actcacatca      1680
     actggagtca ccaccagcga gtagtgggga tggaagtgat aaggcctgtc cagcgtgccg      1740
     ccaaaagaat catcggctga aggattgcgg tgtgttcagg tcctattcta ttgaagggag      1800
     aagtcgtttc gtacagcagc atggaatctg tcgtaattgt ttgaatgctc atggtagacg      1860
     tgcttgccga aattctggag tttgtggagt aaacgcatgt ccgtaccgtc atcatcaact      1920
     tttgcatttt ccacgatcaa atgtatccgc cgtggaaaat cacgttcacc gtgaaattca      1980
     tccttcgctc tacttcagaa taatcccagt tacaatttgt ggaggaggca gaagcattga      2040
     gatcttcgca ttcttagacg atggttcgca actaacgctg attgaggaag ggctggtgcg      2100
     acagctaggt gtcgaaggta tggagcttcc gctttgtttg aagtggacag gaaatatgac      2160
     acgaaccgaa aatggatccc gagcagtaag cttgtcaata accacggatg acaaacgcct      2220
     cttcgagctc aaggaagttc gtacagtgaa gtctcttacg cttcccagtc aaaccgtaga      2280
     ctatgattat ttggcaacga agtactccca tctgcgtgga atcccaatga aaagctattc      2340
     cgcagccgtt ccaagattac tgttgggagt tgataatcta cggttgaccg ttccattgaa      2400
     aaccagagaa ggcaaaatca acgaacccgt agcggtaaaa actcgtttgg gctggtgcat      2460
     ctacggcgga caggcgcagt cagtcacagc atctctaaac tatcattact gcgagtgttc      2520
     ggctgaccaa gctctgcacg gtctcgtaaa ggagtttttt gctgcagagg atgtgggaac      2580
     gcgatcccca ccaccaatag tatcggagga cgacagaaga gcaagtgagc tgctggagac      2640
     tacaacgaaa cggacaggaa gcagatttga aaccggatta ctgtggcgat ttgacaattt      2700
     caagctacct gagagttacg gaatggcgtt gaaacgactg gaatgtttgg aaaaacgaat      2760
     ggaaaagcaa ccggaattga gggctaacat agcaaagcaa atcaacgaat acgtagctaa      2820
     aggctacgtt caccgtgcaa cggaagagga attgaggttc gctgattcaa aacgagtgtg      2880
     gtatcttccg ttgggtgtgg tgttcaaccc gaagaagcca aataaagtcc ggctaatttg      2940
     ggacgccgct gccaaatcac atggagtgtc tcttaacgac atgctactta aaggacccga      3000
     tcaattgacg tcattgccag cagtgttatt tcgtttccgg caatttgcga tagctgtttc      3060
     agctgacata gccgagatgt tccaccaaat tggaatcgtg gaaggcgatc gtcatgcaca      3120
     gcgttttttg tggagagaag atccattcac agccccagaa gtttttctaa tgaacgttgc      3180
     gacatttggc tcaacgtgct ctccagcatc agcccaattt gttaaaaaca aaaatgcttt      3240
     agagttcaga cagcaatacc caagggcagt tcagagcatt gtgaaaaacc actacgtgga      3300
     cgatcttctg gaaagcttcg aaaccgaaga agaagcagcg aaggtaatac aggaggttcg      3360
     gatgatccat gcccatggtg gattcaatat ccgtaatttc caatcgaaca gtcctgttgt      3420
     tttggacagt gtgggcgaaa agagtgcgtc gaatccttgc agtctggatt tgcatcaagc      3480
     cgaaaggtct gaacgcgttt tgggactgtt gtggacccct catgaagata tgcttggatt      3540
     ttcaacaata atgccagacg aaatacaaaa ggtgatctcc acaggagttg ctcccaccaa      3600
     acgccaagtt ttgaaatgct tgatgagctt ttacgatcct ctgggattgt tagccttatt      3660
     tacggttcag ggaaagatca ttctccaagc aatctggcgt agcaataccc agtgggatca      3720
     acaaatcggt gcagttattc gaaatcgatg gcagcagtgg atacagatac tagttgactt      3780
     acaacatctg catttcccac ggtgttactt tgaccaagct actttaaaat actaccaaca      3840
     tgttcaactc cacatattcg ttgatgcgag cgaggaagct tatgcggccg tagcattctt      3900
     tcgcatagtc gatccacaag gaagggtgtg ctgttcttta gtggctgcca aaacaaaagt      3960
     agctcccatc aagccaatat ccatacctcg cctcgagctg caggcagcag ttcttggtgt      4020
     tcgactgatg caatggatcg ttgaaggtca ttctattcga atagaaaaaa aggtgttctg      4080
     gacggattcc agcacggtct tgtcgtggat caaatctgat aagagacgat acaaacagtt      4140
     tgtggcagtt cgagttggcg agatcttgac agaaaccaac gtggaggagt ggaggtacgt      4200
     accgtcgaag aaaaatattg ctgacgccgc aactaaatgg ggaaaaggtc cagatcttaa      4260
     cccggatggt gtttggttca agggaccgac atttttgaaa gacatcgaat ctaaatggcc      4320
     tgtgactccc aaactaaagg aagacgacgt tgaagttcgt cctatcttcg tccatcaagc      4380
     ggtaccagtt gtaaaacttg ttatcgattt ggaaagattc tcgaactgga atcgagtatt      4440
     acgcactaca gcatatctac ttcggttcat aagcaggagt cgaaagagaa ctgttccgca      4500
     gtcaacctat ctttctcagg aagaattggc cgcagcctgg agatacctaa tctgtgccgt      4560
     acaatgggat tcttacccgg acgaaatggt gaccttgaca aacaacctac gaaatcccag      4620
     tggtcaaatg agagcgttgg acaaaacaag tagcctatac cagttatcac caatgctcga      4680
     tgattgcgga atgctacgtg tggacagtag aatacaggct gcaaggaatg tactaaacga      4740
     caccaagctg ccaattatct tgccaagaaa acacaagtta acacacctta tcatcgagtc      4800
     cttccatcga aagtatcttc atggaagtcc agaaaccgtg gtcaacgaga taagacaact      4860
     gtattacatc ccgaaacttc gcaccatggt caggctgttc acaaaagaat gtcagttgtg      4920
     caagattaaa cgagctcaac cacaaatacc aagaatggct ccactaccat ctgcgcgttt      4980
     ggcctcattc attagaccgt ttagctacgt tgggttagat ctatttggcc cactcctggt      5040
     taagctcggt agaagtaatg ctaaacggtg gattgcttta ttcacatgct tgacaatccg      5100
     ggctgtccat gtggaggtcg tgtacagcct ctcgacggat tcttgtgtga tgagcgtacg      5160
     ccgattcgtt agccgtcgtg gagcaccagt agaaatccat tcggataatg gaacaaactt      5220
     cagaggtgcc gatcggttgc taagagaaca aattcagaac attaatgaag caatggcaga      5280
     aacattcacc aataccacta caaagtgggt cttcatccct cccagtgcac cgcacatggg      5340
     cggatcatgg gaacggatgg tgcgttccgt aaaggtggcg atggaagcag ctaatggggg      5400
     acggagactg gacgacgaag gactgataac actggcagtt gaagctgaag ggattgtcaa      5460
     ttcgagacca ttgacctacc ttccgttgga ctccgaagaa gcagaggccc ttactcccaa      5520
     tcattttatc ctggggagct ctagtggcgt acgacagcca gcgatgaaac cggcggacga      5580
     agcagttgct ttacggaact cttggggaca aattcaagta cagacggatg ttttctggaa      5640
     acggtggacg cgtgaatatc tgcctacact cacgcgacgt gtcaaatggt tcggggaggt      5700
     aaaaccgata gctgtcggag acttagtatt agtcgtagaa gaaacaagga gaaacgggtg      5760
     gactagaggt cgcgtttgtg aggtttacaa ggggcaggat ggtcgtatcc ggcaggcaat      5820
     ggttcagacg agtggaggtt tgattcgtag accagtctca aagttagcta ttctggatgt      5880
     ggcgcaggtc ggtaaaactg gacccggaac atccggtgac cagtgttacg gggaggagga      5940
//
ID   BEL-644_AA-LTR repbase;    DNA;    INV; 443 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-644_AA_;
KW   ao_Bel_Ele11; BEL-644_AA-I; BEL-644_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-443
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 443 BP; 148 A; 92 C; 75 G; 128 T; 0 other;
     tgtgctggct ggtagcactg cgtgagcagg tccaccacag cgccagaagc ttatgcgttg        60
     acaaccggcg agtacggaaa ctatccacgt caagataacg tttcctgcca tcacatatca       120
     ctttgtttca ttgagctgcg agtgaagacg cgcctttggt attataattc ttattcctaa       180
     atttattccc aattaaaatg aatttgttgc tacttataga ctagaattgc tacttaaact       240
     aaatttgtta ctacttcatc taaatttgtt tctacttaaa actattggaa gaccgaattt       300
     gtaagtatta aatgagaaaa cctattgagc aaatctaaca aataaaacat atttcagctt       360
     gaagctagac acaccataac cctagttgtg cttgctaaaa agaatcggtt agaacccaaa       420
     aagaaccaac cccagtagaa aca                                               443
//
ID   BEL-645_AA-I repbase;    DNA;    INV; 5996 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-645_AA_;
KW   BEL-645_AA-LTR; Pao_Bel_Ele219; BEL-645_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5996
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4989-5507] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..2172
FT                 /product="BEL-645_AA-I_1p"
FT                 /translation="MASDSDSVNQRVLDFTETPCGICGPSTQDEEMIGCDG
FT                 CSAWFHSRCVNVVSGKLPKKWFCQNADCQVKAEEYRKQREARKQQRSRKEV
FT                 DESDKSSVNSRLGASSVEAKVRALEERQKRQYEEMEAELQLRKREREMQRA
FT                 FERKKMELELQMRAEEEEEQKAWQAEMLRKKAEQIERMKANQESFEKKMAA
FT                 MDKQLAEFSIQKGPTSASKLGGDGRASKVNEKVLKLSKENVKKLAADDDDL
FT                 DEDSEDDEESEVSSQSSESSDEECPIPPSRHLKRKGMQKVDEVSQNGLEQQ
FT                 RTGPTKAQLAARKGLTYKLPKFSGKPAQWPLFYAAYKASNEACGYMNHENL
FT                 MRLHEALEGDALELVSGQLLLPQSIPRVIEKLRRHFGRPEQLLESLLDKVN
FT                 RLQPPKADNLRSFVPFGNTVEQLCSHLEAAELHQHLVNPLLIKSLVDKLPD
FT                 REKREWIHFRRGRGETTLRTLTDFLMDIVADACEANVDVEFKPPQQPKAVP
FT                 QSGKKLHKEKGGLYLHNEASNPAATSSEVKKLKPCKMCQGTNHRLRHCADF
FT                 KKLRYVNRLRLVTREKLCHVCLNEHDGQCKFRIRCNVGECREPHNPLMHPV
FT                 ENTVGLSAHIRTNCTVLFRIVPVQLHCGGKPLRCSHFSTKVPPSRWWRKSS
FT                 PIAWVLSEYKSDSPSGGRETYREWRKPAEPACGYRAQTPVPTTRCSCTRFI
FT                 RLVN"
FT   CDS           2912..5134
FT                 /product="BEL-645_AA-I_2p"
FT                 /translation="MLVPLVKVLAGFREWSIAFGGDLKEMFHQLKIRAEDK
FT                 QKQRFIFRKHSEDPPSVYVMDVATFGSTSSPCSAQFVKNRNAEEFASQYPE
FT                 ASAAIIHRHYVDDYFDSVDTEEEAVKRAQEVRLVHQKGGFEIRNWVSNSPE
FT                 VLRSLGEEKPAAPVHFGRDKQTSNERVLGVIWDPDMDQFAFSTTHREELLP
FT                 YLYEGKRPTKRLVASCVMGFFDPLGLLSPFTIHGKIVIQYLWRSGCDWDQE
FT                 IDPDSWQLWKRWTALLPVVEAIRIPRCYIGGAKSAEVDSLEVHIFTDASEH
FT                 GYGCVAYLRAVINGAVHCSLMMSRAKVAPIKRQSIPRLELMGAVLGARISQ
FT                 TVLDMHSYQICRTVFWTDSRTVYSWLHSDQHRYKQFVAFRVGEIQELTKVT
FT                 DWRWIPTKLNVADVLTKWGQGPPLQNDGEWFNGPSFLYRPEEQWPTQEATI
FT                 EETHEEARGVVLFHGVIDVEPISRWTKLLRVTASVVRFIANCRRKKRGEPI
FT                 VTTRATAKQRQMIEATAANYAALHAPLQREELQRAETLLWRQAQWDSFPDE
FT                 MSALTNNLKRQPGRPVENIKKSSPIYKSSPVLDDEGVLRMDGRLANSEESS
FT                 FDKKHPIILSRAHEITQRLIQHYHEEFGHANSETVFNEMRQRFQIPKMRPA
FT                 IQQVVKNCVWCKVNKCRPRSPRMAPLPVERVTTQHRPFSSVGLDYLGRWKS
FT                 RWGVERRSVGWQFLPVWRCGGTPRGRAQPYHGIVPDGDHAL"
XX
SQ   Sequence 5996 BP; 1577 A; 1536 C; 1798 G; 1083 T; 2 other;
     ttctcaaaaa taaaktgaca tacgattgtg tccttgtgag aagccaatct tgccccaaat        60
     atggcttccg attccgattc cgtcaaccaa cgcgtccttg atttcacgga aactccgtgc       120
     ggtatctgcg gtccgtcgac tcaggacgaa gaaatgattg gttgtgatgg ttgttccgcg       180
     tggtttcatt cccgttgtgt caatgtggtg tccggaaagt tgccgaaaaa gtggttctgc       240
     caaaacgcag actgccaggt gaaagctgag gagtaccgga agcaacgaga agccaggaag       300
     cagcagcgca gccgcaagga agtcgacgag tcggacaaat ccagcgtcaa ctcccgctta       360
     ggcgcatcta gcgttgaagc aaaggtccga gcgctagagg aacgtcaaaa gcggcagtat       420
     gaggagatgg aagcggagct gcagctgcgg aaaagagaaa gggagatgca gcgtgcmttc       480
     gagcgaaaga agatggagtt ggagctgcag atgcgtgccg aagaagaaga ggagcaaaag       540
     gcttggcaag cggaaatgct ccgaaagaag gcggaacaga tcgagcggat gaaggcgaac       600
     caggagtcgt tcgagaagaa gatggcggcc atggataagc agttggcgga gttttcgatc       660
     caaaaggggc caacatcggc gtcaaaactc ggtggcgacg gtcgtgccag caaagtcaac       720
     gaaaaggtgt tgaagctgag caaggagaac gtcaagaagc tagcggcaga cgacgatgac       780
     ttggacgagg atagcgagga cgacgaagaa tccgaagtgt cgagccaatc ttccgaatcg       840
     tcggacgagg aatgtcccat tccgccatcc aggcacctca agcggaaagg catgcagaag       900
     gtggatgaag tgagccaaaa cgggcttgag caacagcgga ctggaccgac caaggcgcag       960
     ctagccgcga ggaagggact aacctacaaa ctcccaaaat tctcgggcaa accagcgcag      1020
     tggcctctgt tctacgccgc ctacaaagct tctaacgagg cctgtggtta catgaaccac      1080
     gaaaacctta tgcgactgca tgaagcgctg gaaggcgatg ccctcgagct agtttccggg      1140
     cagttactgc tccctcaatc aatcccgagg gtcatcgaga agctgcgtcg gcatttcggc      1200
     cgcccagaac aactactcga gagcctgctg gataaggtga atcgtctgca acctccgaag      1260
     gcggataatc tccggagctt cgttccattc ggaaacacgg tggagcaact ctgtagtcat      1320
     ctggaggccg cggaacttca tcaacacctt gtcaacccac tgctgatcaa gtcactggtc      1380
     gataagctgc cggatcgcga gaagcgtgag tggatccact tccgaagagg ccgtggcgaa      1440
     acgacgttgc gaacgctgac agacttcctg atggacatcg tggcagatgc ttgcgaggcc      1500
     aacgttgacg tcgaattcaa gccgccgcag cagccgaagg cagttcccca atccgggaag      1560
     aagctgcaca aggagaaggg tggactatac ctccacaacg aagccagcaa cccagccgct      1620
     acgtccagcg aagtgaagaa gctcaaaccg tgcaaaatgt gtcagggaac caaccaccga      1680
     ctgcgacact gtgcggactt caagaagctg cgatacgtta accggttgag actggtgact      1740
     cgagagaagc tgtgccatgt ttgcctcaac gagcacgacg ggcagtgcaa atttagaatt      1800
     cgctgtaatg tcggcgaatg cagagaaccg cacaacccgc tgatgcaccc ggtcgaaaac      1860
     acggtcggat taagtgcaca cattaggacc aactgcacgg ttctattccg gatcgtgccg      1920
     gtacaactcc actgcggtgg aaaaccgcta cggtgctcgc atttctcgac gaaggtgcct      1980
     ccgtcacgct ggtggagaaa aagctcgccg atcgcctggg tgctttcgga atacaagagc      2040
     gactcaccat caggtggacg ggaaacgtat cgagagtgga ggaaacccgc agaaccagct      2100
     tgtggatatc gagcacaaac gccggtgcca acgacaagat gctcctgcac acggttcata      2160
     cggttggtaa attgatgcta ccgcgtcaga agctggacag cgaggagctc gccgctgaat      2220
     acgggcacat gcgaggcttg cctatcgagt cctacgacgg acagccgcag ttgctcatcg      2280
     gagcgaataa catccattcg tttgctccga tggaggcaaa gataggcact acaatggagc      2340
     caatcgcagt ccgaactaac ctcggatgga cggtgtacgg gccgaggcaa agcaccacgg      2400
     ttgcatcggg caactacctt ggctaccacc agagaatcac caacgatgat ctgcacgagc      2460
     tgctgaaaag ccactacgcg ttggaagagt ccgtcgtggc gattccgcaa gaaacagcgg      2520
     aggagaaacg tgcccgggaa atattggagc gcaccaccaa acgcgtcggc gatcgcttcg      2580
     agaccggatt gctgtggaaa acggatgacc cacgattccc ggacagttac ccaatggccc      2640
     tgcggaggat gaagcagctg gagaagcgac tcgagaaaaa cgagaagttg cgggaaaacg      2700
     tctgcagaca gatcgacgag taccagcaaa aggggtatgc acacctcgcc accgcggaag      2760
     agctgaacgg cactgcctcc gatcaggtct ggtacctccc gctcaacgtc gtccaaaacc      2820
     caaagaaacc tgaaaaggtt cgcctcgttg ggacgccgcg gctacggtac aaggaatttc      2880
     cctgaactcg caactgctag caggaccgga catgctagtt ccgctggtaa aagttcttgc      2940
     tggtttccgc gaatggagca tcgctttcgg cggcgacttg aaggaaatgt tccaccagct      3000
     gaagattcgc gccgaagaca aacaaaagca gcggttcatt ttccgaaaac attcggagga      3060
     cccaccgagt gtctacgtca tggacgtagc gacgttcggg tcgacgagct ctccctgctc      3120
     ggcccaattc gtgaagaatc ggaacgctga agaattcgcc tcacaatacc cagaagcatc      3180
     ggcggcgatc attcaccgac actacgtcga cgactacttc gatagcgttg atacggagga      3240
     agaagctgtc aagcgagctc aggaggtacg actggtccac caaaaaggag gattcgagat      3300
     ccggaactgg gtgtcgaatt caccagaagt cctgcggagt ctgggagagg agaaaccggc      3360
     ggcgccggtg catttcggcc gtgacaagca aacgtcgaat gagagagtct tgggagtcat      3420
     ctgggatccg gacatggacc agtttgcctt ttcaacgaca caccgcgagg agttattgcc      3480
     gtacctctac gaaggcaaac ggccgacgaa aagacttgtc gccagctgcg tgatgggatt      3540
     tttcgatccg cttggactgc tgtcgccgtt taccatccac ggaaaaatcg tcatacagta      3600
     tctgtggcga tccggctgcg attgggacca agaaatcgat cccgactcct ggcagctgtg      3660
     gaagcggtgg acagccctgt taccggtggt tgaagctatc cggattcccc gctgttacat      3720
     cggtggcgct aaatctgccg aagttgattc gctggaagtc cacatcttta ccgatgccag      3780
     cgaacatgga tacggatgtg tggcatattt gcgagcggtt atcaacggag cggtccactg      3840
     cagtttgatg atgtctcggg cgaaggtggc gccaataaaa cgacagtcga ttccccggct      3900
     ggaactgatg ggcgcggtcc tgggagcgcg aataagccaa actgtgctcg acatgcattc      3960
     gtaccagatt tgccgtactg tcttctggac ggattcccgc accgtttata gttggctgca      4020
     ctccgatcaa caccgctaca aacaatttgt tgccttccgc gtcggcgaga tccaagagct      4080
     gacaaaggta acggattggc ggtggatacc aacgaagctc aacgttgcgg acgtgctaac      4140
     gaagtgggga caaggccctc cactgcaaaa tgacggcgag tggttcaacg gaccatcgtt      4200
     cctgtaccgg ccagaagagc agtggccaac acaagaagcg acgatcgaag agacccacga      4260
     agaagcgaga ggcgttgtat tgttccacgg agtgatcgac gtcgaaccga tatcacgctg      4320
     gacgaagttg ttgcgggtga cagccagcgt agtgcgcttt atcgccaact gccggcggaa      4380
     gaaaagagga gagccgatcg ttactacacg ggctacggca aagcagcggc agatgatcga      4440
     ggcgacagca gcgaattacg cggcgctgca tgcaccactg cagcgagaag agcttcagcg      4500
     agcggaaacc ttgctctggc gacaggcaca gtgggacagc tttcccgacg agatgagcgc      4560
     gctcaccaac aacctcaagc gccagccggg cagaccggtg gagaacatca agaagagtag      4620
     cccgatctac aaaagttctc cggtactgga cgacgaggga gtgctgcgca tggatggcag      4680
     acttgccaat tcggaggaga gctccttcga caagaagcat ccaattattc tgtcgcgggc      4740
     ccacgaaatc acgcaaaggt tgatacagca ctaccacgaa gagttcgggc acgccaattc      4800
     ggaaaccgta ttcaacgaga tgaggcagcg gtttcaaatt ccgaaaatgc gtccggcgat      4860
     acagcaggtg gtgaaaaatt gcgtctggtg caaagtcaac aagtgtcgac cgagatcacc      4920
     gagaatggct ccccttcccg tcgaacgagt caccactcaa catcggccct ttagttccgt      4980
     cggcctagat taccttggcc ggtggaagtc acggtggggc gtcgaaagga gaagcgttgg      5040
     gtggcagttt ttacctgttt ggcggtgcgg cggtacacct cgaggtcgtg cacagcctta      5100
     ccacggaatc gtgccggatg gcgatcacgc gctttagtag caagtatgga aagccacagc      5160
     aaatcttttc cgataacgcc acatgctttc ggggagcgaa caacgagatg gtcaaactgg      5220
     agaaaatcaa ccaggagtgt gcggaaaccg tatgcagctc gactaccgcc tggcacttta      5280
     ttccgcctgg aatcccacac atgggtggtg tctgggagcg gatggtgcgg tcggtgaaag      5340
     aagcgatgcg ggcactcgac gacggacgaa aattgaccga cgagatcctg gtgacaactc      5400
     tggctgaagc ggaagacatg atcaacacgc gcccgttgac ctacttgcca caggattcga      5460
     gcgaatgcga agcactgacg ccgaaccact tccttcgagg aacggtgtcc ggtgcagacc      5520
     gaaggtggac ggaggatcga cggctcccgc agaggcactg cggaacgtat acaagcggtc      5580
     gcagttccta gcagaccgaa tgtgggagag atggacgaag gagtaccttc cgacgatcaa      5640
     ccagcggtcg aaatggttcg acgatcagaa accgctcgaa gtgggcgatt tggtcttcgt      5700
     agtcgacgga aagaatcgga agtcctggag acggggcgtc gtcgaagcgg tgatcaaggg      5760
     ctcggatggc cgagtccggc aagcggacgt gaggacggct gacggtaagg tgcagagacg      5820
     gggcgtagta aacctggcga cgctggaggt aaggtaaatc cgggaatgcc ggatgttacg      5880
     ggccggggtg ttgcgacgcg gtttgaaccg gcctaacaag tgaacaggtc tagtcgcgag      5940
     cataaccgca acatgacagt tcgcgtgagt atgtagtggt aggcgaagga gagaga          5996
//
ID   BEL-645_AA-LTR repbase;    DNA;    INV; 636 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-645_AA_;
KW   Pao_Bel_Ele219; BEL-645_AA-I; BEL-645_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-636
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 636 BP; 226 A; 93 C; 146 G; 171 T; 0 other;
     tggcgaacaa acctgtcgat gtgtagagag ggtaagtaaa taaagaccat aggtaaatag        60
     aagaatttcg ccatttcgaa actagaggaa aagcacatta tttgcgaggg agtttatttt       120
     caaaatagat ttccggggat taaatagtgt ccaggctgga taaatcgacg gttagagtgt       180
     aaaggggaat ccgtgagtac aacctgaaaa aggaaagatg aaatgagtga gaaatcaaat       240
     gtaattatgt acttacctgc aggctcggtg aaaccaaact ccgtccgcca cgaaaacccg       300
     tgctaagact gtatgttttt cggtgattta gactgtaagt agaattgaaa tcagtgaatt       360
     aagaaaattt tcagtattat agtttcatct gtgatgagat tcaacagcaa aaataccaat       420
     tgaaatccgc tgaaacgtta gggtagttgg accatagttg gacaccaata ccacggatcg       480
     gaagaaattg aacggcaaga cgaaaccaat ttattgtgag tagacgtaga ttagatcagt       540
     agaaattaat taaatgaaat ttaataaatt ttagtttgag cgttgctgaa aaccagtcag       600
     ctgcttttgg aaaattttgg tttcccttcg ggaaca                                 636
//
ID   BEL-646_AA-I repbase;    DNA;    INV; 6813 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-646_AA_;
KW   BEL-646_AA-LTR; Pao_Bel_Ele195; BEL-646_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6813
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5876-6424] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3977..6813
FT                 /product="BEL-646_AA-I_3p"
FT                 /translation="MFHQVGIRPGDRNSLRFLWSENSDGPVEIYLMDVATF
FT                 GATCSPASAQYVKNLNAMEHLQQYPRAVEGILKSHYVDDYLDSFGSESEAK
FT                 KVSAEVRLVHHNGGFHLRNWRSNSESVTATLGESAKEDSKNLYLESGEHVD
FT                 RVLGMLWSSSTDELSFSTSMSEEVRQLLRNGTRPTKRQVLRCVMSLFDPLG
FT                 LLSFFIIHGKVLIQDLWRAGTEWDEAVGEEVFDHWIRWTKMIEFVASIRIP
FT                 RCYFPRATEETYKAAQLHVFVDASEIAYSCAVYIRTAARDGAFQCALVSAK
FT                 TKVAPLKPMSIPRLELQGCVLGARLLKFVQDSHPIAFSKRFLWTDSTTARS
FT                 WIRSDPRRYKPFVAHRVGEILESTDANEWRWVPSKLNPADEATKWGRGPYF
FT                 SRDSQWFNGPEFLRHPEEAWPRRDDEIGSTAEDIRPSVLFHFAVDTTLNFE
FT                 RFSSWNRLLRATAYVLRFLFNITKPEQKLRGPLAQPELLSAECTIWKLVQR
FT                 ESYPDEVVTLEQNKSDTQKTPLDRKSNLFKLMPILDEAGLVRQRSRIIAAE
FT                 NVTYDARYPIVLPSKHRAVNLLIEDYHRRYRHGNNETIVNELRQRYTISNL
FT                 RRLVKRVAFSCQLCKIRKARPSNPPMAALPPARLAMNVRPFSYVGLDYFGP
FT                 LLTKVGRSNVKRWIALFTCLTVRAVHLEIAYSLSTASCISCVRRFIGRRGS
FT                 PIEIFSDNGTNFQGAERILREQIGKELSMTFTNTTTKWSFIPPGAPHMGGA
FT                 WERLVQSVKSAMKDAYAEGKLSDEELQTLVVEAESIVNSRPLTYLPLDSEE
FT                 SEALTPNHFLLGASSGAKQSGVGVGESQKHLPDTWRGIQCQLDKFWQRFLV
FT                 EYLPVIRRQPKWFDETRPLQVGDLVLVADGARRSEWVRGRVTQIFEGSDGR
FT                 VRQAAVRTRQGIFRRPTTRLAVLDVHGQGAAPEDAGEHRGET"
XX
SQ   Sequence 6813 BP; 1859 A; 1666 C; 1779 G; 1506 T; 3 other;
     aaaatcggtg tagcctttcg tktcctgtcg caacattctt caaaattttc atgatgagtc        60
     atcactctac caccaacaag aaggatggat gtgctggttg caaccgtccg gacgaagcgg       120
     acaatttggt ccaatgcgat gcttgcgatg tgtggtggca cttcagttgt gctggagtca       180
     caggatcgat cgccgatcgt tcgtgggtat gtacccgctg caaacgatca tctcgtgctt       240
     cgtcgagagt cagcgttacg agtcgatcgt catcgcattt ggcggaaagt atggcccgtc       300
     tacgagaacg tcaggaattg gagaagcagc gcgcagaagt agaactggaa aggaagttct       360
     tagacgagca acgaaggctg ttggaagctt cgattatcgc cgaagaggaa cgtcggagcc       420
     aagcaagtcg cggtgatagc caaaggagag ttcgagactg gatagagaac agcgcggatc       480
     gggaaaccgg cgcagcagga ggaaacttct gccagcagct actacgattc agcagcaaaa       540
     ttcgattcta cgtcaagagg actccgaggc tgcggcggta aaagatgtgg aaaaggagct       600
     accttcagag tttccgtcaa acttagacag ccaacatcac agttcacctc tccgagatag       660
     gactattcct gcctttgaga cgtgtgacat tagcgagctt caaccgtttc cggaagtcaa       720
     tcagcataac gccaaggacc taatccgcga attacgagtg agactggagc ggtgcttaca       780
     gcaatccgag ccaacatcgc ctcagatggc agatttgcag cagcaattaa ggctgtgcag       840
     ggaggaaatc gaaggaatgc attcaaccgt gtaccgttta acgacggtgc cgacgcccac       900
     aacccagatg gaggtagtac aacccagagc agcgacgtta ggcgctgtac caaagcagcg       960
     tacgaacgaa atttcttcag gtaagtgtca tgcctccgaa agccaaaccg ataaagcaca      1020
     caaaaaccat gttttacaac cgacatcatt tccaaccatg caaaatcctc taaccgagca      1080
     gcagcgtata gctcacgcgc gctcaaatcc gatatttaac aacgttttgt tagaaaagcc      1140
     gactgttacc caatgcacac ctctcccctc tacaaaaacc caaccttcgc acccgctacg      1200
     tcagcaaacg cagtatgctt tggtttacca accatttgta caacaacagt cattgcgtcc      1260
     gcccctagaa cagcctccag tgcagcagcc ttcggtgcag caattttcgg tgcagcagct      1320
     tcaggcagca gcctccagtg cagcagcttc gatgcagtag cttcagagcg gcagcctcca      1380
     gtgcaacagc cttcagtgca gcgatctttg gtgcagcagc cttcagtgca gcaccttcag      1440
     tgcagcagcc tccagtgcag cggccttcgg tgcagcaatc ttcggtgcag cagccttcag      1500
     tgcagcagcc ttcagtgcag cagcctttag tgcagcagcc tccagtgcag cagtattcag      1560
     tgcagaaatc tccagtgcaa caattgcagc acaacaaccc ccgatacagc aacctcaagc      1620
     gcaacaacca ccagagagca atatacagcg caacagcctc ctatacacca gttttcagtg      1680
     caaccgtcat cagtgcagga gtcttcaatg cgacagccgt tggtgcagca gtattcagcc      1740
     cagcagtatg tagtgcagcc accttcgctt cagcagccgt tgacacagcc accatcagca      1800
     cagcaatata ctatgcagca gcctgtggtg cggcagtatc tagcacagca acctttgctg      1860
     caacaatctc aagtcggagc ctctccttct ccggtagtgg ttccagacat gaatgatcta      1920
     gagagaggga tggacgaacc gcccacgcaa cagcagctaa cgtctcgtcg atcgttggcc      1980
     cgagatcttc ctacattttc tggggatcca gccgaatggc cgatattcat ctccaacttc      2040
     gaatatacga cgaggacttg cggctacaca aatggagaga acatgctccg cctacaaaga      2100
     tgcttgcgag ggcgtgcgct agaaagtgta cgaagccgtt tagtgtttcc ggcagcggta      2160
     ccccaagtaa ttgagacgtt acgtatgaga tacgggcgtc cggagttgtt aatcaacgtt      2220
     ttgttgcaga aggttaaagc gatgcccagc atacgaggag acaagttgga atcgctcata      2280
     gaatatggga tggcggtcca agagctatgc gatcacattg aagcggcgaa tgagagggct      2340
     catttgtcaa atcctacact gttgcaggag cttattggga aattaccagc ggatcagaaa      2400
     ctgatgtggg cggctttaag cgaggacgtg ccttggtaga tctcgaaact tttagcgaat      2460
     atatgtccgg tgtaatgcag gacgcatcaa gtgtggtggt gtacgaaccg gattcgcgaa      2520
     aaataggagg aagggagaaa acaaaggggt acgcgaactc gcacattacc aaggttgacg      2580
     gaacttcatc ttcgacgcca actcagaaca agcctagtga gtgtctacat tgcgacaaag      2640
     aaggccataa acttcgggaa tgccaagcgt ttagaacgct ttccgttgac gatcgatggc      2700
     ggcgtatccg aacactgaac gtgtgtcaaa tctgcttgtt cagtcatgga agaagagcct      2760
     gccggattaa caatcgtgca atgtaagtgg atgtcagttc aaacatcatc cactactgca      2820
     cggaaaatcc accactccat caacacagat tggaaacact cacactcacc agcttctcga      2880
     ttcggggtcc tattccgcat cataccagtg acgctacatg gaaagtccgg gaaaatcaac      2940
     acctttgctt ttctggacga gggctcttca tcaacgcttg ttgacggtgc tctggtagcg      3000
     cagcttggtc tagtggagaa ccaaatccta tttgcttaag atggactggg aacacatcgc      3060
     gggtagagaa ggattctcag ctggtgacca tcacaatatc aggaatggag cagaagcact      3120
     tatataagtt agtagatgct catacggttc ggaacttaaa tctaccgact caatctttcg      3180
     aactagcaga agcagcaaag aagttcgcat acttgaagca gctgccgatc caaagctatc      3240
     gcaacgccag accggagatt ttgatcggag ttgataatat cagacttgct gtgccactta      3300
     agataaacga aggagatgga tctggaccaa ttgccgttaa gacacgattg ggctggtgcg      3360
     tttacggtcg gcaaggtccg cagagtaatg aaggattcag cttccatatt tgtggctgta      3420
     cgaaagacga cgaattacac gagaccgtaa aacagttctt cgccgttgag gaaagcggag      3480
     taaagtatct cgaaacttct ctcagtgcag aagacaaacg agctcgagag ttgctggaat      3540
     caacaactaa gcgagttggt acccacttcg agacaggttt actgtggaag gacgacgaga      3600
     tagagttacc ggacagctac ggcatggcgt tgcgaagaca tcagtgcctc caacgtaaga      3660
     tggaacgtca acctgctctg aaggaaaata ttaatcgtca aataaaagaa tacgtcgaga      3720
     aagggtacgc tcatcgcgca acttctgccg acctggacac tgcggaccca gaaggatatg      3780
     gttcttaccc ttaggagcag tgacgaatcc aaacaagccc ggaaaggtac gccttgtatg      3840
     ggatgcagca gcgaaggttt ctggagtttc gttgaatagc gtcttgctta aagggccgga      3900
     ccaacttaca ttgttgccag ctgtactgtt tcgcttccgg ctgtattccg ttgccgtcag      3960
     tgcggatata gagcaaatgt ttcatcaggt cgggattcga ccaggcgaca gaaactccct      4020
     gcgctttttg tggagtgaaa attctgatgg accagtggag atatacctaa tggatgtcgc      4080
     tacgtttggt gccacgtgct cgccggcatc ggcgcagtat gtgaaaaacc tgaatgccat      4140
     ggaacaccta cagcaatacc cgagggccgt cgaagggata ctaaagagcc actacgtaga      4200
     tgactatctg gacagttttg gcagtgaaag tgaggcgaag aaggtatcag cagaagtacg      4260
     tctggttcat cataacggtg gatttcatct acgaaattgg aggtcgaaca gcgaaagtgt      4320
     cacggcaaca cttggtgaat cagcgaagga agacagcaaa aacctttacc tggaatctgg      4380
     tgaacatgtg gatcgagtac tcgggatgct gtggtcttca agtacagacg agttgagctt      4440
     ctccacctcc atgagcgaag aagtcagaca actccttcgt aacggtaccc gcccaacaaa      4500
     gcgacaagta ctgcggtgcg ttatgtcact gtttgaccct ctggggcttt tgtcgttctt      4560
     cattatccac gggaaggtgc ttatacagga cctgtggcga gccggtacgg agtgggacga      4620
     agcagtaggt gaagaagtat ttgatcactg gattcgctgg acaaaaatga tcgagttcgt      4680
     agcatccata aggataccga ggtgctattt cccacgagca actgaagaaa cgtacaaggc      4740
     tgctcaacta cacgttttcg ttgacgccag cgaaattgct tactcatgtg cagtgtatat      4800
     ccggacggct gcccgagatg gagccttcca atgtgcttta gtctctgcca aaaccaaggt      4860
     ggctccgctc aagccaatgt ccattccgag gttagaactg caaggatgtg tgcttggtgc      4920
     tcgtcttctc aagttcgtgc aagatagtca ccctatcgca ttttctaaga ggttcctttg      4980
     gacggactct acgacagcga ggtcatggat caggtcggat ccgagacgct acaagccttt      5040
     cgtagctcac cgagtaggag agatattgga gagtacggat gcaaacgaat ggcggtgggt      5100
     gccgtccaag ctcaaccctg cggatgaagc cacaaagtgg ggccgtggac catactttag      5160
     cagggatagt caatggttta acggaccaga attcctgcga catcccgagg aagcttggcc      5220
     tagaagagac gacgagattg ggtcaacagc tgaagacata agaccttcag tattgttcca      5280
     ttttgcggtt gatacgacac tgaacttcga acgtttttca tcgtggaaca gattgctgcg      5340
     cgccacggct tacgttttac gtttcctctt caatatcacc aaaccagaac agaaactgcg      5400
     tggaccgctt gcacaacctg agctgctgag cgcagaatgt acaatttgga aacttgtaca      5460
     gcgagaaagt tatcctgacg aagtagtcac cctcgagcag aataagtccg atacgcagaa      5520
     aacacccctt gatcggaaaa gtaatctttt caagttgatg ccaatattgg atgaagccgg      5580
     attggtgcgg caacgaagcc gcattatagc tgcggagaat gtgacctacg atgccaggta      5640
     tccgatagtt ctaccatcga agcatcgagc tgtcaacctc ctgatagaag actatcatcg      5700
     tcgctaccgt catggaaata acgaaaccat cgtcaacgaa cttcgacagc gttataccat      5760
     ttcgaactta cgtcgkctcg tgaagcgggt tgcgtttagc tgtcaactat gcaagatccg      5820
     caaggctcga cctagcaatc cgccgatggc agcccttcct ccagcccgcc tggcgatgaa      5880
     cgttcgtcca ttcagctacg ttggtctgga ctactttgga ccgcttctca caaaagtagg      5940
     gcgctcaaac gtgaagaggt ggatcgccct ctttacgtgt cttactgtac gagccgtaca      6000
     cctagagata gcgtatagct tatccactgc gtcgtgcatc tcctgtgtac gacgtttcat      6060
     cggtcgccga ggatcgccga tagaaatatt tagcgacaac ggaaccaact tccagggggc      6120
     ggaacgcata ctccgagagc agatcggaaa ggagttatcc atgacgttta ccaatacgac      6180
     cacgaagtgg agcttcattc ctcctggagc tccacatatg gggggtgctt gggaaaggtt      6240
     ggtgcagtct gttaagtctg ccatgaagga tgcatacgca gaagggaaac tgagcgatga      6300
     ggaattgcaa acactggttg tagaagcaga aagcattgtc aattcgaggc ctctgacata      6360
     cttgcctttg gactccgagg agtctgaagc tttgacaccm aatcactttc ttttgggagc      6420
     gtctagtgga gcgaaacaga gtggtgtggg cgtaggtgaa tcccaaaaac atctacccga      6480
     tacttggaga ggaatccaat gccaactgga caagttttgg caacgcttcc tggtagagta      6540
     tctaccagtc atccgaagac aaccaaaatg gttcgacgaa accagaccct tgcaggtcgg      6600
     tgacctcgtc ctggttgcag atggcgctag gcgcagcgag tgggtacgag gaagggtaac      6660
     ccagatattc gaagggtcag atggtcgagt ccgacaagct gccgtgcgaa cccgacaggg      6720
     aatcttcaga cgaccaacga ctaggctggc tgtcctcgac gtacatggac aaggtgctgc      6780
     cccagaagac gcaggggagc accgggggga gac                                   6813
//
ID   BEL-646_AA-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-646_AA_;
KW   Pao_Bel_Ele195; BEL-646_AA-I; BEL-646_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-462
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 462 BP; 168 A; 78 C; 80 G; 134 T; 2 other;
     tgttaccggt accgtcgagt tgcgcaccct atctcaaccg gttccctcac tggattgata        60
     aggtgccact ggtcgatgtc aaagagatca cgataacaas aaaacgacga ttatatgcat       120
     agagcgtgga gtgaattaca ttaaagctat ttttctacta tctaaaagtt atmttacatt       180
     ataaataatc tattgtgctt aaaactagtt tcttagccta aatacgaact agtggaggta       240
     agaagattga attaacattg aatttatatc ctaatatgag attcattgta cacctaccca       300
     ggagctaaaa ctaacctaaa aggaagtcag ttggacagtg aaatttgagg aaaattataa       360
     tttgaagggc aactgaaaag taagttaact tataaaccta atagaacgct taactaaatt       420
     aattcacgtt acagttttga agctacaata aatcagctac ca                          462
//
ID   BEL-647_AA-I repbase;    DNA;    INV; 6037 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-647_AA_;
KW   BEL-647_AA-LTR; Pao_Bel_Ele227; BEL-647_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6037
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5024-5593] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1874..4570,4574..5908)
FT                 /product="BEL-647_AA-I_1p"
FT                 /translation="MRNCQGAHHPLLHRVEESVQLQKAKSDCTVIFRMMPV
FT                 TLYVGKRQYDTVAFLDEGSSATLVDDVVAKRLKAEGTLEPLIVTWTGNINR
FT                 FENESRSVEMMMSAKGSREKFPLFNTRTVSELQLPKQNVRYAEVVQRYKHL
FT                 AGVPTKDFPSGVPTILIGLDNLHLFAPLESRVGKPNEPIAVRSKMGWTIYG
FT                 SEKRKPTVQTYLNLHSVAPVSNQELHDLMRHQYVLDETACSSFAVPEPAEE
FT                 KRAREILETTTKRIGDRFETGLLWRQDERRFPDSYPMAVRRMKALDRKLER
FT                 SPALKENVCRQIEEYQMKGYAHKATDAELTETPQAAVWYLPLNVVVNPRKP
FT                 GKVRLVWDAAASVNGVSLNSELLKGPDMLVPLPRVICNFRERPVAFGGDIQ
FT                 EMYHQIRIRTEDKQAQRFIFRGNSDDAPQVYVMDVATFGSTCSPSSAQFVK
FT                 NLNAEQFSDQYPEATVAIVKRHYVDDYYDSVDTVEEAVQRANEVKYVHSRG
FT                 GFHIRNWVSNSGEFLENLGERSSESSVHFSLDKSTEYERVLGIVWDTVEDV
FT                 FCFASASKSEYAEVLSGDKRPTKRIVLSIVMAQFDPVGYLAPVTILGKMLI
FT                 QDLWRTGCQWDEVVDEASFGKWKRWTDILADVRAFKLPRSYFGSARSEEVQ
FT                 DVQLHIFADASETAYGCVAYFRAVVRGEVMCALVMSRAKVAPLKQLSIPRL
FT                 ELLAAVLGARMSQTVCENHNFHITKVVFWIDAEVVLSWIRSDQRRYKQFVG
FT                 FRIGEILSLTRLADWRWVPTKLNVADQLTKWGKNPEIDPNSAWVRGQQFLY
FT                 ESEEEWPKKSLPPANTMEELRVHLLLHDVKVPAVLVDATRFSKWTVLVRTM
FT                 ACVIRFVSNCRRKRERLPIETLRATRSQLKVLIPNAGASVRVPLKQEYEKA
FT                 ERCLLRIAQSESFVDELKVLSRNKIRPASQWMAIEKSSPLYKLTPLVDEHG
FT                 LIRMEGRVERAEFLPFDLRFPVILPDDHRITRLIVQHYHERSGHGYRQAVK
FT                 NELRQLYYIPHVDAVVRKVSASCMWCKVHRCRPEAPRMAPLPVQRVTPNLR
FT                 AFSYVGVDYLGPYDVTVGRRTEKRWIALFTCMVTRAVHLEVAHGLTTQSCL
FT                 MAIHRFIGRRGWPIEFFSDNGTNLRGASKEVVEAAQGIRDDCADLLTNART
FT                 KWTFNPPAAPHMGGVWERLVRSVKEALRALDDGRRLTDEILQTAIVEAEDI
FT                 INSRPLTYVSQQSDEAEALTPNHFLRGVSPNQPCVALPPPHPAVALRDAFQ
FT                 RSQQLASVMWERWIKEYVPLLNQRTKWFGEARPLRAGDLVYVVEGANRKCW
FT                 VRGVVEEAIKSGDGRVRQAWVRTSTGGTSERQ"
XX
SQ   Sequence 6037 BP; 1448 A; 1415 C; 2002 G; 1168 T; 4 other;
     gaaatcgttt gtgccgccga cttgatccga acaaaatcaa aaattttaaa tcggattctt        60
     cgagatggct tcctcacctt ccaagaacga gctatgtttg ttctgctcga tgtcggagtc       120
     aatgtctgag gacgttgact gggtccaatg tgggaagtgt aaacactggg cccatttttc       180
     gtgcgctggt gttgaccaag ggattgtcaa tagtcattgg ctttgcccac agtgtgtccc       240
     wagtagtgtt cagcagctga gagttcctga tgcgaccgac aagaagagga gtaagaagtc       300
     cggcaagaaa agcgatggag ggtccgatca gggagttggt tccgacgttg atccagttga       360
     gaagcagttg gaagaggaac aactagccaa ggagaaggcc ttcgcgaagc agatggcggc       420
     gcggaagaag ttactcgctc ggcagaaggc gtggaaggaa gagcagctga agcaagaacg       480
     ggagatgcgt gagctggaac tccaggttca acgcgagatg gaggagcagc agttgcagca       540
     cgagcaagag atgctagatg ctcaactggc tgcggagagg gatttttgaa gaagcgggat       600
     gcgatccgga agcagtttgc tagcagcgtt agtagggtca acgcgttgaa ggaccaagaa       660
     ggcgctgttg gtggagcttc ggcagacaat ccgaagcaga aagtgtacga gtggttggac       720
     gagcagacgg agattgccaa attgccgtcg gccgccgatt ttcggggagc gtaccccaaa       780
     ggcgatccgc tgcgagcgga gtcgaagaaa gttgagaagc cgaagctgat gaagaaagtg       840
     cgggaagtgg tcgagaccga gtcggaatca agcgaagaag acgaaagcag cgattcgtcg       900
     gaggatcgag tgagaagtag ccgtcatagc aacaaagccg gcgacgggcc ggggcgaagc       960
     gttggtcgaa gctcgagatg tagcgaagtt ggcgataggt cggagcgagc cgtcggccga      1020
     attacgagag agcagctggc cgctcgaaaa gcggtgtcgc agcaccttcc gaagtttcgc      1080
     ggagaagcgg aagtttggcc gctattcatc agcagcttcg aacacaccac agcggcgtgt      1140
     ggattcacga atttggagaa tctgaagcgg ctgcaggact gtctgcaagg agacgcgctc      1200
     gaggcagtca ggagccgatt agttctgccg attcagttcc ggatgttatt cgggaccttc      1260
     gaagcctgtt cgggaagccc gagaagctgt tgaagacgct gctgacgaag gtgaggagcg      1320
     ctccagcgcc gagagctgat cggctggaga cgttcataaa ttttggtatc acggtgaagc      1380
     aactgtgcga ccatttggaa gccgcacgac tgaacgacca cctcaataac ccgatgctgg      1440
     tgcaggagtt agtcgacaag ctgccgccaa gctacaagct ggactgggtc cggtacaagc      1500
     ggggcagagt ggacagtccg ctgaggatgt tcacgaactt cgcgaccgac atagtgtccg      1560
     acgtctccga agtggcggaa ttcaccacac tgtcgatgaa cgaccgggtg cggcctggga      1620
     aggagaacaa tcggaagaag gagttcgtgc atgtgcacga gtccgagccg aagcgaagtg      1680
     aagtcaatcg tagcgaggtg gccagccggc cttgctggat ttgcgggcga acggatcatc      1740
     tgattcggaa ctgcgaagag ttcaggcgaa tgaacatcgc agagcggcta cgagaagtcg      1800
     agaggcagaa actctgtgga gtctgcctca acaagcacaa tggaaatcgc tgtcctccaa      1860
     aattcggtgt gtgatgcgga attgtcaggg agctcatcat cctctgctgc accgggtaga      1920
     agaatcagtg cagctgcaga aagcgaaatc ggactgcacg gtgattttcc ggatgatgcc      1980
     ggtgacgctc tacgtcggca agcgacagta cgataccgtc gcattcctgg acgaaggatc      2040
     gtcggcgact ttggtggatg acgtggtcgc aaaacggctg aaggcagaag ggacactcga      2100
     gccgttgatc gtcacgtgga ccggaaacat caaccggttt gagaacgagt ctcggagtgt      2160
     cgaaatgatg atgtcggcga agggttcgag ggagaagttt ccgctgttca acacgcgaac      2220
     ggtgtctgag ctgcagcttc cgaagcagaa tgttcggtac gcagaagtgg tgcagcgata      2280
     caagcatctc gcaggggtgc cgacaaagga ctttccgtcc ggtgtgccaa cgattctcat      2340
     cgggttggac aaccttcatt tgttcgcgcc gttggagtca cgtgtcggga aaccgaacga      2400
     accaatcgct gtacgatcga agatgggctg gacgatctac ggttccgaga agcgaaagcc      2460
     cacggtgcag acgtatttga atctgcactc cgtcgcaccg gtgagcaacc aggagctcca      2520
     tgacctgatg cggcaccagt acgtgctgga cgaaacagcg tgttcgtcgt tcgccgttcc      2580
     agaaccggcg gaggagaagc gggctcgaga aatccttgag acgacgacaa agcggatagg      2640
     cgatcgtttt gaaacgggat tgctgtggcg ccaggatgag agaagatttc ccgacagcta      2700
     cccaatggcc gttcgacgga tgaaagccct cgaccgtaaa ctggaacgca gtccagcgct      2760
     gaaggagaac gtgtgtcggc aaattgaaga gtaccagatg aaggggtacg cacacaaagc      2820
     aaccgacgcc gagttaacgg agacgccaca agcagctgtg tggtatctgc cgctgaatgt      2880
     tgtggttaat ccacggaaac cgggcaaggt acgcctggtc tgggatgctg cagcgtcggt      2940
     gaatggggtc tccctgaatt cggagttgct caagggtccg gatatgctag tccccctccc      3000
     acgggtaatt tgcaatttcc gagagcgtcc ggtcgccttt ggtggggaca tacaggaaat      3060
     gtaccaccaa atccgcatca gaacggagga taagcaggcg cagcggttca ttttccgggg      3120
     caacagcgac gatgctccgc aggtgtacgt tatggacgta gcgactttcg gctccacgtg      3180
     ctcgcccagt tcagcgcagt tcgtgaagaa cttgaacgcc gagcagtttt cggatcagta      3240
     cccggaggct acggtagcga tcgtcaagcg gcattacgtc gacgactact acgacagcgt      3300
     ggacacagtg gaagaagcgg ttcagcgagc gaacgaggtg aaatacgtcc actcccgcgg      3360
     aggtttccat atcaggaact gggtgtccaa ttcaggcgag ttcctggaga atcttggaga      3420
     gcggagtagt gagtcgtcgg tgcatttcag cctggacaag agtaccgagt acgagcgtgt      3480
     gctgggaatc gtatgggata cggttgagga cgttttctgt ttcgccagcg catcgaagtc      3540
     ggagtacgct gaagtcctca gcggtgataa acgtccgacg aagcgaatcg tgctcagcat      3600
     cgtgatggcg cagtttgatc cggtggggta cctagcgcca gtcaccatcc taggaaagat      3660
     gctgattcag gacctctggc ggacagggtg tcaatgggac gaagttgtgg atgaagcatc      3720
     gttcggcaag tggaaacggt ggacggacat tctggcagac gttcgagctt tcaagctgcc      3780
     acgcagctat ttcggcagtg cgcgatcgga agaggtccag gatgtgcagt tgcatatatt      3840
     tgcggatgcg agcgagacgg cgtatggatg cgtggcgtac tttcgagccg tagtacgcgg      3900
     tgaggtgatg tgtgcgctcg tgatgagccg agcgaaggtg gcaccgttga agcagctgtc      3960
     gattccgcgc ctggaacttc tggcagccgt gctcggcgca cggatgtcac agacggtgtg      4020
     cgaaaaccac aatttccaca ttacgaaggt ggtcttttgg atcgacgcag aggtggtgct      4080
     gtcgtggatt cggtccgatc agcgccgcta caagcagttc gtcggttttc gtatcggaga      4140
     gatcctgagc ctaacgaggc tggcagactg gcgatgggtg ccgacgaagt tgaacgtggc      4200
     agaccagctg acgaagtggg gtaagaaccc ggaaatagac ccgaacagcg cgtgggtacg      4260
     aggacagcag ttcctgtacg agagtgagga ggaatggccg aagaagagtt tgccaccggc      4320
     gaacacaatg gaggagttgc gggttcacct actgctgcat gatgtgaagg ttccagcggt      4380
     actagtggac gcgaccagat tctcgaagtg gacggtcctg gttcgaacga tggcgtgtgt      4440
     gatccgattc gtttcgaatt gcaggcggaa aagggagagg ctgccgattg agacgctgcg      4500
     agcaacgaga agtcagctga aggtgctgat accaaacgcg ggagcttcag ttcgcgtgcc      4560
     gctgaagcaa gasgagtatg agaaggcgga gcgctgcttg ctgaggattg cgcagtcgga      4620
     gagtttcgtc gacgaactga aggtgttgtc gaggaacaaa attcgaccgg caagccagtg      4680
     gatggcgatc gagaagtcca gtccgctgta caagctgact ccgctggttg acgagcatgg      4740
     cctgattcga atggaagggc gagtggagcg agcggagttt ctaccgttcg acttgcggtt      4800
     tccggtgatt cttccggatg accaccggat cacgaggctg atagtccagc attaccacga      4860
     gaggagcggc cacggatacc gccaggcggt gaagaacgag ctgcgacagc tgtactacat      4920
     tccccatgta gacgcggtgg taaggaaggt gtcggcatcc tgcatgtggt gcaaggtgca      4980
     tcgttgtcgt cctgaagctc cgaggatggc cccgcttcca gtgcagcgag taacgccaaa      5040
     tctacgtgca ttcagctacg ttggcgtaga ttacctggga ccgtacgatg tgacagtagg      5100
     acgtaggacg gaaaagaggt ggatcgcgct gtttacctgc atggtgacac gcgcggtaca      5160
     tttggaggtg gcgcacgggc tgacaacgca gtcgtgtttg atggcgatac accggttcat      5220
     cggccgtcgg ggctggccga tcgagttctt ctcggacaac gggacgaatc tgcgaggagc      5280
     cagcaaggaa gtagtggagg ctgcgcaggg catcagagat gactgcgcag acctattaac      5340
     gaacgcgaga acgaagtgga cgttcaaccc tccggccgca ccgcacatgg gaggcgtctg      5400
     ggagcggttg gtccgctcag tgaaggaggc gcttcgggcg cttgacgacg gaagacggtt      5460
     gaccgacgag attctgcaga cggccatcgt tgaagcggag gacatcatca actcccgtcc      5520
     gctgacgtac gtgtcgcagc agtccgacga agcagaagca ctcactccga accattttct      5580
     gaggggtgtt tcaccgaacc agccatgcgt ggcgctacca cctccccatc cagcggtggc      5640
     cttgcgggac gcgttccagc gttcgcaaca attggctagc gtgatgtggg aacggtggat      5700
     aaaggagtac gtgcckttgt tgaaccagag gacgaaatgg ttcggcgaag caagaccgct      5760
     acgtgcagga gatctggtgt acgtagtcga gggtgccaac cggaagtgct gggtccgtgg      5820
     agtagtggag gaagccatca agtctggcga cggaagggtc cgtcaagcgt gggtgcgtac      5880
     cagcaccggg ggtacaagcg agcgacagtg aagctggcca gaatggaagt acaggatggt      5940
     aaccctgagc cggatgtggc ttccgggaca gagttacggg ccggggaatg ttctggcagc      6000
     actgccgccc cgatgagacg tgagagtgag cgccmgt                               6037
//
ID   BEL-647_AA-LTR repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-647_AA_;
KW   Pao_Bel_Ele227; BEL-647_AA-I; BEL-647_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-732
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 732 BP; 284 A; 96 C; 175 G; 177 T; 0 other;
     tgacagcgac aggtgagaaa gaaagagaag gagagatgac agatgtcgta gaactgtcat        60
     caggtgtaaa tgtaaataaa aacaaagaag agttagaagt aaggaaagga taaaagtata       120
     gttgagcggg aaagtggaaa tagctgtaac atcaagagtt ggtttttgga gaaaagtgta       180
     gagaagttct ttttatcgaa taggtcacaa ccgtggagtc gctgaagaca gtaagtttta       240
     atttattaga aacagaacga gcaaaacaaa atctgcatat cactttagca tccaccgtac       300
     ggatacggac gctagacgat acggacaaat tagacgagta aacgattcaa gggaccacag       360
     gacggacagg taaaggacaa ttattactat acagacagac aaactagaat gtttaattta       420
     taacagacaa aggacgcaga acgttgaaca caaacgacag ccggttatcg cgaatagtag       480
     catcggaaac tgtaagttgt agtgattagg gtggaacaaa aatatgatac ataattataa       540
     tttggtagga atttgtgcga aggacattgt tcggaaaagg agaaaggaag cctgattatg       600
     aaggcaaact aaaattgtaa gtgggcttat ttatcctaaa tgttatgtcg taaatttgtg       660
     cacatactaa aacgaaaatt tattatttga attgcagttt gatctgcctg aaataaaacg       720
     ggctgattta ca                                                           732
//
ID   BEL-648_AA-I repbase;    DNA;    INV; 6178 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-648_AA_;
KW   BEL-648_AA-LTR; Pao_Bel_Ele213; BEL-648_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6178
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5240-5797] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..1417
FT                 /product="BEL-648_AA-I_2p"
FT                 /translation="MPKDDAHDCGACNRPNSADVGMVSCDGCKVLYHYTCA
FT                 KVSPGVLKRSWRCSTCQTEPPAEPTGTKKRGVRKQSASLTVLGAASSEIPK
FT                 SSAASQKDLEKSKASQQSKTSEKSITVVVPIPGTSGVITPKKNPEVPTVAT
FT                 HGEKKSTKSSTSTAKARAQLALQRLEEERLLEEQKLMDERARVEEERIRLE
FT                 KEKQLKEQEHAIKAKELAMREKYLRDKFELKEQIADEESSSNSSPISSRTR
FT                 TKAWLQDQQKLKPIQDDNSVTHKSEYNLQNIEAGSNRLQPPSVVRSYRPRP
FT                 PSVVGPTQLQPADLENDRQVEDLRFNAPLGFPNQRGDFGNEMQPVALEGVP
FT                 NLQGNREGCENRMQPEDYLPSAVQNEAGFNAGMLPALGGCLEGPMNEMRPG
FT                 LHGAGPNANQIAASKSGRRSCPRSLATRKIGQYSSTVSRRPTLRVASQTWK
FT                 ISSGCGSACEGQRETPSSRS"
FT   CDS           1420..3693
FT                 /product="BEL-648_AA-I_1p"
FT                 /translation="MFPQNVRTIMDTLRRLFGRPELLVKNLLNKVHRAEAP
FT                 KPERLDSLINFGLTVQQLCDHLEAANLRSHLSNPTLLGELVEKLPASIKLE
FT                 WARFKRAHADPTLRHFGMFMEELVNDASEVTMPIQQKSAVSRADRDKLKEK
FT                 GHVYAHEEVADSQSRSKERQPCPICSKIDHRVRNCEQFQKLSLDARLKAVE
FT                 RWKLCEVCLFDHGQWRCRSRFRCNVGSCRDRHHPLLHRPKQEQRPSQSQAS
FT                 ECHTHQRPQRSVLFRIIPVTLFNENRKCETFAFLDEGSSLTLVEAGLARQL
FT                 GANGVAEPLELLWTSSVMRNENDSKRVDCEIAGKGLPRRFALKNAHTVEEL
FT                 KLPNQSLAMKELSERYPHLRNLPVSSYSEAVPRILLGLENLSLFAPLDSCV
FT                 GRPGEPIAVKSLLGWSVYGPVGNGRAKEGFVNVHECNCGADRELNDLVRQQ
FT                 FILEDSMIRSTPPLESTDEKRAREILECTTKFVDGKYETALLWKADDVELP
FT                 NSLPMAMKRLKSFEAQLAKDPSLRDAVNQQINDFVQKGCIHKATEEELIEI
FT                 SRRQVWYLPLGLVTHPKKQKKRLVWDARAQVNGISLNSQLLKGPDLLVSLP
FT                 SVICKFREKRVGFGGDIREMFLQLRMRTSDKYFQCFLFRSDSQQPPEVYIA
FT                 DVAMSGATCSPCVAQHVLRVNADKWAKEFPQAAAAIKDKTYMDDYYDSADT
FT                 PEEAAELAVQVRTIHAHGGFEMRNWVSNSAEVLEKLGESAVVEPRILQSSV
FT                 KSDGKEF"
FT   CDS           4133..6178
FT                 /product="BEL-648_AA-I_3p"
FT                 /translation="MAKSRVAPLQHLSIPRLELEAAVLGAKLLNTVMTNHS
FT                 LKPRKVYLWSDSSTVLSWIRSDHRRYKQFVAHRIGEILSLTQTENWRWVPT
FT                 KENIADCLTKWVDDTEPDSNGSWFKGPAFLYHPEDLWPQQRVKANTQEELR
FT                 SRYLLAHISVPIRMIDPSRISKWTVLLRTVACVYRFISNCRLRIAGRPIEA
FT                 IPVTRNQEKLLKRTVAAQVVPLKQEEFQQAERFFWRMVQGEYYPDEVRTLM
FT                 NNRDQPIDKWTPVEKDSPLYRFSPFADEYGVVRMEGRTADAAYASFDARFP
FT                 IILPKDSPITQRLLEHYHHRYGHANKETVVNEVRQRFEIPHLRSVVEKISR
FT                 NCLSCKVNKCKPHPPRMAPLPEQRLVSNVRPFSYVGIDYMGPLEVSVGRRK
FT                 EKRYVVVFTCMVVRAVHLEVAYDLSSDSCIMAIRRFTRRRGSPVEIFSDNG
FT                 TNFVGASRELQKQVERIDLECAGTFTDARTKWSFNPPSAPHMGGVWERMVR
FT                 SVKEAMAALEDGRKLTDEILWTTLVETEGLINSRPLTYMPQEPDNPEALTP
FT                 NHFLLNSSSGAHEPLEPPEDLGQALRSSFARSQQLADVAWERWSKEYFPTI
FT                 NERSKWLNEAKSLKVGDLVYVAEGKRRSWTRGIVDEVFPGKDGRIRQVIVR
FT                 TASGKLKRPVVKLAVMELGGSTESPPVDPRGGG"
XX
SQ   Sequence 6178 BP; 1630 A; 1513 C; 1754 G; 1279 T; 2 other;
     tcctcaaaga tttgtgctta agatgccaaa ggacgatgcc catgattgcg gcgcctgcaa        60
     ccgaccgaat tccgccgacg tcggaatggt gtcctgcgat gggtgcaagg tgttgtacca       120
     ctacacgtgt gctaaggtgt caccaggggt tctaaaacgg tcttggagat gcagcacttg       180
     ccaaaccgaa ccgcctgccg aaccaaccgg tactaagaaa aggggagtta ggaagcagtc       240
     ggctagcttg actgtcctcg gtgcagcatc gagcgagatc ccgaagtcaa gtgccgccag       300
     ccagaaggat ttggagaaat cgaaagcatc ccagcagtcg aaaacctccg agaaatcgat       360
     taccgtcgtt gttcctattc ccggcacgag cggcgtaatc actccgaaaa agaatccaga       420
     agtcccaact gtagcgaccc acggggagaa gaaatccacc aaatccagca cttctaccgc       480
     caaagctcga gcgcaattgg cattgcagcg attagaagag gagcgactat tggaggagca       540
     gaagttgatg gatgaacggg cgcgagtaga agaggaacgg atccgtcttg aaaaggagaa       600
     gcagctcaag gagcaagaac acgcgataaa ggccaaggaa ctagcgatgc gagagaagta       660
     tctgcgagac aagttcgaac tgaaggagca aattgccgac gaggagagca gcagcaattc       720
     cagtcccatt agtagtcgga ctagaacgaa ggcctggctg caggaccagc agaagttgaa       780
     accgattcaa gacgacaata gtgtaacgca caaatcggag tacaatctgc agaatatcga       840
     ggcaggatcg aatcgacttc aaccgccatc cgtggtaaga tcttatagac ctcgaccacc       900
     atccgtagtc ggaccgactc agctacagcc agctgacttg gagaacgatc gccaagtgga       960
     agatttgaga tttaatgcac ctctcggttt cccgaaccag cgtggagatt ttgggaacga      1020
     gatgcaaccc gtcgccctgg aaggagttcc taacctccaa gggaaccgtg aaggctgcga      1080
     aaaccggatg caacccgagg attatcttcc cagtgccgtc cagaatgaag ccggattcaa      1140
     tgctggtatg ctgccagcgc ttggtggatg cttagaagga ccgatgaatg aaatgcgacc      1200
     aggattgcac ggggcggggc cgaacgccaa ccagatagcg gcaagcaaat ctggccgaag      1260
     aagttgccca cgttctctgg cgacccggaa gattggccaa tattcgtcca cagtttcgag      1320
     acggccaacg ttgcgtgtgg cttcacagac gtggaaaata tcatccggct gcgggagtgc      1380
     ttgcgagggg cagcgagaga cgccgtcgtc acgaagctga tgtttcctca gaatgtgagg      1440
     acgataatgg ataccctacg ccggttgttc ggtagaccag aactactggt gaagaatttg      1500
     ctgaacaagg tacaccgggc ggaggcaccg aaaccggaac gattggattc gttgatcaac      1560
     ttcggtttga cggtgcaaca gttgtgcgat catttggagg ccgccaacct tcgaagtcat      1620
     ttgtcgaatc ctacgctgct tggcgagtta gtggagaagt tgccagcatc catcaaactc      1680
     gagtgggcga gatttaagcg agctcacgcc gatccaacgc ttaggcactt cgggatgttc      1740
     atggaggagc tggtgaacga cgccagcgaa gtcacgatgc caatacagca gaagtcggca      1800
     gtttcaagag ccgacaggga caaactgaag gagaagggac acgtgtacgc ccatgaggag      1860
     gtcgccgatt cgcagagccg cagcaaagag agacagcctt gcccaatatg cagcaagata      1920
     gaccaccgcg tacggaactg tgaacaattc cagaaactga gcctggacgc tcgtctaaag      1980
     gccgttgaac gatggaaact gtgtgaggtt tgtttgttcg accacggcca atggaggtgc      2040
     cgatcgagat ttcggtgtaa cgttgggagc tgccgagatc gtcaccaccc gcttcttcat      2100
     cgtccgaagc aagagcaacg tccatcacaa tcccaagcgt cggagtgcca tacgcatcag      2160
     cggccgcagc ggtcggtcct gtttaggatc attccggtta cattgttcaa cgagaaccgt      2220
     aaatgtgaga ctttcgcctt cttggacgaa gggtcttcat tgacactcgt agaggctggc      2280
     ttggcgcggc agcttggagc gaacggtgtc gctgaacccc tagagctgct ttggacttcg      2340
     agcgtaatga ggaacgagaa cgattcgaag cgtgttgatt gcgaaatagc gggaaaagga      2400
     ttaccccgtc gttttgcatt gaagaacgcg cacaccgttg aggagctgaa gcttccgaac      2460
     cagagtctgg ccatgaagga gctatcggag cggtacccac acctccgaaa tctacctgtt      2520
     tcgtcgtact ctgaagctgt ccctaggatc ctgctcggac ttgaaaatct gagtcttttt      2580
     gctccattgg atagttgtgt cggccgcccc ggagaaccaa tcgccgtgaa atcgctgcta      2640
     ggctggtctg tctatggacc ggttggaaat gggagagcga aggagggatt cgtcaacgtt      2700
     cacgaatgca actgtggcgc tgatcgagag ttgaacgacc tagttcggca gcagtttatt      2760
     ctagaagact cgatgatccg gtcaacacct ccgctggaat ccaccgacga gaagcgagct      2820
     cgcgaaatct tagagtgcac tacgaagttc gtggacggaa agtatgaaac tgctctactt      2880
     tggaaagccg atgacgtcga actaccgaat agtctcccga tggcaatgaa gcgactgaaa      2940
     agtttcgagg ctcaactagc gaaagatccg agtttgcgcg atgcagtgaa tcagcagatc      3000
     aacgacttcg tacagaaggg ctgtatacac aaggccaccg aggaagaact gatagagatc      3060
     agtcgaagac aggtttggta cttaccgcta ggcctggtaa ctcacccgaa gaagcagaag      3120
     aagaggctgg tgtgggacgc aagggcgcaa gtcaatggca tttctctcaa ctcccaattg      3180
     ctgaagggcc cagacctgct ggtatcgctt ccgtccgtga tctgcaaatt tcgcgagaag      3240
     cgcgtcggat tcggaggcga tattcgagaa atgtttttgc agctgcgtat gcgaacgtcg      3300
     gacaagtatt tccagtgctt cctgtttcgc tccgattccc aacagccacc ggaagtctac      3360
     atcgctgacg tagcaatgtc tggtgccaca tgttcgccat gcgttgcgca gcatgtgctg      3420
     cgagtgaacg ccgacaagtg ggcgaaagag tttcctcaag cggcggcggc gattaaagac      3480
     aaaacatata tggacgacta ctacgacagc gccgacactc ccgaagaagc tgcggagcta      3540
     gccgtacaag tgcgaaccat ccacgctcac ggaggcttcg aaatgaggaa ctgggtcagt      3600
     aacagcgcgg aggtgttaga gaagcttggg gaaagtgccg tcgtggaacc gcgaatcctg      3660
     caatcaagtg tgaagagcga tgggaaagag ttttaggaat gttgtggcat ccacggacac      3720
     tctgacgttt tctacggaac taggagagca gctgcttccc tacgtgtccg gaggaaagcg      3780
     accaacgaaa cgcacggctc tgaagatcat aatgagcctg ttcgatcctc tgggtttgct      3840
     ggcgccgtat ctcatccacg gaaggaccct gatccaggat ctttggagaa gcggaataca      3900
     gtgggacgag caaatgaagg acgacgagca cgagaactgg aagcgctggg taaaattgct      3960
     gcctggtatt aaagacctca gcattccacg atgctacttc ggtgatgtag atccacgctg      4020
     ctataagtcg ttgcagtgtc atgtgttcac cgacgccagc gaggtcagtt atggctgcgc      4080
     ggtgtacttt cgcataacgg acgamtacga acgagtgcac tgcacgttga tcatggccaa      4140
     gagcagagta gcccctctac aacacttgtc gataccccga ctggagctgg aagcagccgt      4200
     gctaggagcg aaactgctga acaccgttat gacgaaccat tcgctgaagc cccgcaaggt      4260
     gtatctgtgg tcggattctt cgaccgttct ttcgtggata cgttcggatc acaggaggta      4320
     caagcagttt gttgctcatc gtatcgggga gatcctgtcg ctgacccaaa cggagaactg      4380
     gcgatgggtt ccaacgaagg aaaacatagc cgactgcctg acaaaatggg tggacgacac      4440
     agagcctgat tcgaacggta gctggttcaa aggtcccgcg ttcctgtacc atccagagga      4500
     tctatggcca cagcaacgcg taaaggccaa cacgcaagaa gaactacggt cgagatattt      4560
     gctcgctcat atttcggtgc ccataagaat gatcgatcct tccagaatct ccaagtggac      4620
     tgttctatta cgaaccgtcg catgcgtgta ccggtttatc agcaactgcc gattgcgaat      4680
     cgcgggacgc ccgatagagg ctattcccgt aactagaaat caagagaagc tactaaaacg      4740
     gacggtagcg gcgcaggtcg ttccactgaa gcaggaagaa tttcaacaag ctgaacgttt      4800
     tttttggcgg atggttcaag gagaatacta tccagacgaa gtccgaaccc tgatgaacaa      4860
     ccgtgatcag ccgattgaca aatggacacc cgtggagaaa gacagtccgt tatacagatt      4920
     ttctcccttt gccgacgaat atggagtagt cagaatggaa ggaagaaccg ctgatgctgc      4980
     gtacgccagt ttcgatgcaa gatttccaat cattcttcct aaggacagcc cgatcactca      5040
     acggctactg gaacactatc atcatcgata tggtcatgcg aacaaagaga ccgttgttaa      5100
     cgaagttcgc cagcgattcg agatcccaca tctacggtcg gtggtggaga aaatttcccg      5160
     gaactgcttg tcctgcaagg tgaacaaatg caagcctcat cctccacgaa tggctccctt      5220
     accggaacaa cgattggtgt ccaatgtccg acctttcagc tacgtcggta tagactacat      5280
     gggtccgctg gaggtctccg taggtcggcg caaggagaag agatatgtcg tggtgtttac      5340
     gtgcatggtt gttcgggcag tccacctaga ggttgcctat gacctgtcga gcgattcttg      5400
     cattatggca attcgtagat tcacccgtcg gcgtgggtca ccggttgaga tcttttctga      5460
     caatggcacc aattttgtcg gtgccagtcg agaactgcag aagcaggtgg agcgaatcga      5520
     cctggagtgt gccggtactt ttactgatgc gcggacgaaa tggtcgttca atcccccctc      5580
     cgcaccccat atgggcggag tgtgggaaag aatggtgcgg agcgttaagg aagccatggc      5640
     cgcattggaa gacggccgaa aactcaccga cgaaatattg tggactacgc tggtcgaaac      5700
     tgaagggctg atcaactctc gaccacttac ttatatgccg caagagccgg acaatcctga      5760
     ggctttaacg cctaaccatt tcctcttgaa cagctcatcc ggcgcacatg aaccgctgga      5820
     accaccagag gacctaggac aggcccttcg aagcagtttt gcgcgttcac aacagctagc      5880
     ggacgtcgca tgggagcgat ggtcgaaaga gtactttcct acaatcaacg aaaggtctaa      5940
     gtggctaaac gaggcgaaat ccctgaaggt cggcgacctc gtgtacgtag cggaaggtaa      6000
     acgaagatct tggacgagag gtattgtaga tgaggtcttt cccggaaagg acggwagaat      6060
     ccgtcaagtg attgtaagaa cagcgagtgg taagttgaag cgtcctgttg ttaaactggc      6120
     tgttatggag ctgggcggat ctacggagag ccctcccgtc gatccacggg gcggggga        6178
//
ID   BEL-648_AA-LTR repbase;    DNA;    INV; 667 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-648_AA_;
KW   Pao_Bel_Ele213; BEL-648_AA-I; BEL-648_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-667
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 667 BP; 205 A; 111 C; 140 G; 211 T; 0 other;
     tgttctggca gcacggacga tgacaaccgg agcggtatgc agaatccgac tgtatgatag        60
     atcgagagct acctagacat taagaattga aaaggccagt gaagtgggtg aaacgtgcac       120
     cacattgttg agctctatga atttggcaca tttacgattt atttctatgc tttttattga       180
     gttaagtgat tgctgattac caaaatacca catttttggt gtagatcgtg gattgcaata       240
     ttgaggtggt ttgccaaagg gcgccggtaa tgatcagtgt ataattaatt tgataaccta       300
     agaatctatt gtattgaact cctattgtac tattcctatc gcagattcga taattaatag       360
     ctgttttcca gttataaatc cgataaattg aagctcaaat tgttaaatac gtgcgacaag       420
     gtatgaatta ggtcgattat gtgatacaat gagtaattaa attatcgtca tcttgctagc       480
     gcaggtatat ctaccatagg aatcttggct ttatacggta gggttctgaa ccgataggcg       540
     aaaccaaatg tatggattat ggcacaattt tccgaaaaga agtctaataa acaattaatc       600
     ttttttcagc tttgagctgc gcaaattgaa acgctgctgc gagatttctt ttacctatca       660
     accaaca                                                                 667
//
ID   BEL-649_AA-I repbase;    DNA;    INV; 6193 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-649_AA_;
KW   BEL-649_AA-LTR; Pao_Bel_Ele107; BEL-649_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6193
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5225-5785] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1577..6136
FT                 /product="BEL-649_AA-I_1p"
FT                 /translation="MRDVTLMQELVCKLPPAIKLDWARRTKKLTKVTLTTF
FT                 SDWIFSIAEDASIVANPRKPSSYEHEARSKRQGKAFVNAHVDSSSAIASDQ
FT                 MAAGNRMHNASNQKVFLEESISCPLCKGSCRTAAKCKRFLDLSYEARWAAV
FT                 REFRLCRRCLRKHGGNCNSKVCGVNGCAFKHNSLLHRNLVAPSVSAVSANQ
FT                 SKTKEEHSVNTHQVNAGLELFRYLPVTLFGPQAKVECYAFLDDGSELTLLD
FT                 EQIANELELVGNPLPLCLKWTGGTHRFEEKSRRVDVGISGINGKKFDLSGV
FT                 RTVEALELPYQSLNVDVLKSKYQHLSDVPVESYNRVRPRILIGVKHANVSL
FT                 VRRCREGKDGEPIAVKTHLGWTIFGGRSNHEPKADGSYSYHICACNHPNDE
FT                 LLHREVKQYFSLDSLGIMAPVNSTMSRDDERAMALLNSFTRVVGNKYESGL
FT                 LWRFDDIRLPDSRPMALQRLKCLQRRLANDANLKLAYDEKLADYLAKGYIR
FT                 KVTAEELVQKKDRIWYLPTFPVINPNKPGKIRIVWDAAAMAHGVSLNSVLL
FT                 TGPDMLSSLVNVLNQFREYRYGICGDIREMFLQIGIRPEDQFCQLFLWNDS
FT                 INDGEPNTFMVSVMIFGARSSPTTAQFVKNQNARRFEVEFPLAVETIEKKH
FT                 YVDDMLASTETEIEAIELAKSVKHVHAQGGFDIRNWVSNSPKVLEALDESA
FT                 TGEKSLNFTAEIATEKVLGMWWNTSTDCFTFKISWSRFEAALIDGNRAPTK
FT                 RELLRILMSIFDPLGLVSHFLMILKVTLQEVWRMGLKWDDQIEGRQLESWK
FT                 AWISLLPKLEELQIPRCFRRVTTVGEHNQIQMHTFVDAGDNGMAAVVYLRF
FT                 EEHGYVECALVGAKTRVAPLKYLSTPRSELQAAVIGTRLADTISKSLSLPV
FT                 SQRFFWCDSRNVLCWLRSDHRRYSQYVAARVSEILDTSDVTEWNWIKSEWN
FT                 VADDGTKWTGQVQLKTSDRWFQGPAFLQQPEREWPASPHSMETTCEEMKSN
FT                 ILAHVHSKDAKAVVEAAHYSSWRRLTKVTAYVQRFVVNLRAKQQGLPLRRG
FT                 LLSSEELRLAQLYHFRQAQSDVFSEEMKILCQAKEAGNNLRTQVESSSRIY
FT                 KMSPFLDEDSVLRMNSRASKCRFLFPDEKYPIILPDNHPVTNLLLADFHER
FT                 YHHRNYATVANEVRRRYCIPRLRQTLRRMRCSCMWCRNRDAKPAPPEMAEL
FT                 PKARLAAFSRPFSHVGVDYFGPIEVIVGRKVEKRWGVILTCLTIRALHIEV
FT                 ANTLSTSSCMMVLNNFIARRGTPVCFYSDRGTNFVGASKELREALRLLDSH
FT                 EIAKEFTTPTTSWQFNPPASPHMGGSWERLVQSVKRNLTEVLKCKRPTDEE
FT                 LRSALTQIESVLNSRPLTEVPVDNESEPALTPNHFLLGSSDGSKPMTLYDD
FT                 NVQVVRRGWQVSQMIANQFWRRWLTNYLPVITRRTKWFKKVKPIAVGDVVV
FT                 ITDPELPRNCWPKGRVIGTVEKGGQVRRATVQTSKGVYERPAVKLAVLDVW
FT                 SESG"
XX
SQ   Sequence 6193 BP; 1782 A; 1344 C; 1635 G; 1431 T; 1 other;
     acttttaata tcgtttattg gaagaggtgc gaaatgtcca atccggtcga ccatagtacc        60
     cctacgacta gcagaggtgc tgaaggtaag caaaaacccg aaaagacacg tctctcccga       120
     aagcagaaat caaataaaga ccccccaaac gaccccaatc cccaatacaa gccttctgtc       180
     gcacaagaca aagcgcgagt aggtggacct aagtcgccaa tttcctcccg gattccgagc       240
     ctcaacgaag ggaagaagtt gcatcatgtg tgcggatgta gatcaaagcc ggatggttca       300
     atgcgttact tgtagatgtt ggtgccactt tgattgtgcg ggagttcctc aggacatcga       360
     tcaatgcgaa tggagttgcc tgaaaagcga aactgcgaag gcaaacccgc gtaagcagaa       420
     gacgtccaaa gcgaaaaccc gaagcgtaat gcagacatcg aagccaacga aaactactac       480
     caagaagaag agttctggaa aaccaaagac ggtacaggat tcaacttcca aggacctccg       540
     aacagatccg aaatccgcgg gcggtgaaaa accgacggat ctggatgcta tgctgttggc       600
     tgaaatcgag aagaaggaaa cggtgttggg cagagcaaaa tcgatgaaat ctggatcatc       660
     ttgcaaatca gcattatcgc tgaaactgca gatgcagcaa gttctggctg aagaaacatt       720
     gatgcttgag gagatgcggc ggagacgtga attcatgaag aaaaagttcg agctgatgga       780
     ggaattcgcc gaagtacgaa gctgccctgt cccaggtgct aaagtgaccg acccgctaac       840
     gaaggtaaaa ggttggttac agaagcaggt cccatcagac agtgaatcgg aagatgctac       900
     tgaggagagt gatacagatg gtagtggcga tgatacggat gagacctgct caaaccacga       960
     atccgaggtt gatgaagatc atgtaaaata atctgataat atagaacagg aaagcgaggg      1020
     tgatgaagtg agcgccacgg atagcgatgc gacggcaaga gaaaatctat atgcgcacga      1080
     ggcgagattc gttccgggag aacgttcaac tcccgttcat gcgaagttac ccggtacttc      1140
     aacgcgtgtg aatcattctc gtatcagcaa cgctctcaca cgtgagcagg tggcggcccg      1200
     ccaggtagtt ccatgtagcc ttccaaagtt cagcgggaac cccgaggaat ggcccatgtt      1260
     tatttcgacg tttgatagta ctacttcgat gtgcggctat agggacgagg aaaatatgat      1320
     tcgtctccgg aattgcttga aggatgaagc ctttgcagct gtacgaagtt tcctcatgca      1380
     cccatcgatg gtcccgaaag cgataagcgt attaaagctt agattcggcc aaccacacat      1440
     gataatcagt actttacgag ataaggtcct agctatgcca ccagttagag ccgattcaat      1500
     cgmgaagctg gtcgactatg ctctggccgt gcagaatttg tgttctacga tcgatgcctg      1560
     tggacggaaa gagtacatga gagacgtaac cctaatgcaa gagctagtgt gtaagctccc      1620
     accggctatt aaattggact gggcaagacg cacaaagaaa ttgacgaagg taactctaac      1680
     caccttctct gattggatct tttcgatagc agaagatgca agcatcgtgg caaacccccg      1740
     aaagccaagc agctacgaac atgaagcacg aagtaagcgc caaggaaagg cgttcgtaaa      1800
     cgctcacgtt gattcttcgt cagcaatcgc gagtgatcag atggcagctg gaaaccggat      1860
     gcacaacgct tccaaccaga aagtgttcct ggaggagtcg attagctgtc ctctatgcaa      1920
     gggaagttgt cggacggccg cgaaatgtaa acgattcctc gatctttcgt atgaagcaag      1980
     gtgggctgcg gtacgcgaat tcagattatg tcgtcgatgc ttgcgtaagc acggagggaa      2040
     ctgcaatagc aaagtgtgcg gtgtcaacgg ttgtgcattt aagcacaatt cacttctaca      2100
     taggaatctt gttgcaccga gtgtatcggc agttagtgca aatcaatcaa aaactaaaga      2160
     agagcacagt gtgaatacgc accaagtgaa cgctggcctg gagcttttcc gctatctccc      2220
     cgtgacattg tttggaccgc aagcgaaggt tgaatgctac gcctttctcg acgatggatc      2280
     ggagttaacg ttgttggatg aacaaatagc caatgagttg gagctggttg gcaatccact      2340
     gccattatgt ttaaagtgga caggaggaac tcatcgattc gaggaaaagt cgagacgtgt      2400
     ggatgttgga atctccggta tcaatggtaa aaagtttgac ttgagcggag tgcgaacggt      2460
     tgaggcactt gagttaccgt atcaaagttt gaacgttgat gtcctaaaga gcaagtatca      2520
     gcacctgagt gatgtcccag tcgaatcgta taatcgagtg cgtcccagga ttctcatcgg      2580
     agtcaagcat gccaatgttt cgttggtgag acgatgtcgt gaaggaaagg atggcgaacc      2640
     catcgctgtg aagactcatc taggctggac gatcttcgga ggtcggtcaa atcacgaacc      2700
     gaaggctgac ggaagttata gttaccatat atgtgcatgc aatcacccta acgatgagct      2760
     acttcaccga gaagtcaaac agtatttcag cttagatagt ttgggaataa tggcaccggt      2820
     aaactcaacg atgtctagag acgatgaaag ggcgatggca ttattgaatt cattcacgcg      2880
     agtggtcgga aacaaatacg aatctgggct tctatggcgt ttcgatgata tccgtttacc      2940
     tgatagtcgg ccgatggctc ttcaacgtct gaagtgcctg caaagacgtt tggctaacga      3000
     tgccaatctg aaactcgcct atgatgaaaa actggctgat tatctggcga aaggctatat      3060
     taggaaggta acagcagaag agttggtgca gaaaaaggac cgaatctggt atctcccgac      3120
     attcccagtg atcaatccca acaagccagg taagatcaga attgtatggg atgcggcagc      3180
     gatggcacat ggagttagtc tgaactcggt actgcttact ggtccagata tgcttagctc      3240
     gctggtaaac gttctgaatc aatttaggga gtatcgctat ggtatttgcg gagacatcag      3300
     ggagatgttc ctccagattg gtattcgccc cgaagaccaa ttttgtcaac ttttcctgtg      3360
     gaacgatagc atcaacgacg gagaacctaa cacattcatg gtctccgtaa tgatcttcgg      3420
     agctcgttca tcgccgacga ctgcccaatt cgtaaagaat caaaatgcac ggaggttcga      3480
     agtagagttc ccgcttgcgg ttgagaccat agagaaaaag cattatgtgg acgatatgct      3540
     tgccagcacg gagacggaga tagaagctat agagttagct aaatcagtaa aacacgtcca      3600
     cgcgcaagga ggctttgata tcaggaattg ggtatcgaac tcccccaagg tattggaagc      3660
     tttagatgaa agtgccacag gagaaaagtc tttgaatttc acggccgaaa tagccaccga      3720
     aaaggtattg ggaatgtggt ggaatacatc aaccgattgc tttactttca aaataagctg      3780
     gtctcgattc gaagcagcgc tgattgatgg gaatcgagcc cccaccaagc gagagctact      3840
     gcgcattctt atgagcattt ttgatccgtt aggacttgta tctcattttc taatgatact      3900
     caaggttacg ctccaggaag tgtggcgtat ggggctgaaa tgggacgacc agatagaagg      3960
     aaggcagctc gagagttgga aggcttggat aagtttacta ccgaagctgg aggaattaca      4020
     gataccccga tgtttccgtc gagttacaac cgttggagag cataatcaga tccagatgca      4080
     cacctttgtt gacgcaggtg ataatggcat ggcggctgtc gtatacctac ggttcgaaga      4140
     gcacggatat gtagaatgtg cattagtcgg agcgaagaca cgtgtagctc ctctgaaata      4200
     cctgtcaact ccaaggtcag aacttcaggc cgctgttatc ggcacgagac tagcggacac      4260
     tatatccaag tctttatcgc tcccagtatc tcaacgcttc ttttggtgtg actctcgtaa      4320
     cgttctgtgt tggctacgct ctgaccaccg acgctatagc cagtatgttg cagcgagagt      4380
     aagcgaaatt ctagatactt cggacgtcac cgaatggaac tggatcaaat cggagtggaa      4440
     cgtcgctgat gatggcacca aatggacggg tcaggtgcag ctaaaaactt ctgatcgctg      4500
     gttccaagga ccagctttcc tgcagcaacc ggagcgagag tggccagcgt cgccacatag      4560
     tatggaaaca acgtgtgaag agatgaagtc gaatattcta gcgcacgttc acagtaaaga      4620
     tgcgaaggca gttgttgaag cagctcatta ttccagctgg aggcgattga ctaaagttac      4680
     ggcatacgtt cagcgattcg tggttaacct acgagccaag caacaaggat tacctttacg      4740
     gcgaggacta ttgtcaagtg aagaactacg attggctcag ttataccatt ttcgtcaagc      4800
     gcaatcagat gtattcagcg aggagatgaa gatattatgt caagctaagg aagcgggaaa      4860
     taatctgcga acacaagtgg aaagcagcag tcggatctac aaaatgagtc cattcttgga      4920
     tgaagatagt gtcctacgaa tgaacagcag ggcttctaag tgccgcttcc tttttccaga      4980
     tgaaaaatac ccgatcatac ttcctgataa tcacccggta accaaccttc tgcttgcgga      5040
     tttccacgaa agatatcatc atcggaatta tgctacagtg gctaacgaag ttcgtcgacg      5100
     atattgtatt ccaaggcttc gccaaacgct ccgtaggatg agatgcagct gtatgtggtg      5160
     tcgcaatcgt gatgcaaaac ctgctccacc agaaatggcc gaacttccaa aagcaagact      5220
     ggctgcgttt agccggccgt tttcccacgt aggcgtggat tattttgggc caatcgaagt      5280
     tattgtgggt cgtaaagtcg agaagcgttg gggggtcata ctgacgtgtc tgacaattcg      5340
     ggctcttcat attgaggtcg ctaacactct tagcacaagc tcatgcatga tggtgttgaa      5400
     caatttcatc gcacgtcggg gaactcctgt ttgcttctat agcgataggg ggacaaattt      5460
     tgttggtgcg tccaaagaac ttcgtgaagc tcttcgcctt ttggacagtc acgaaattgc      5520
     aaaggagttc acaacaccaa caacgtcttg gcaattcaat ccaccggcca gcccccatat      5580
     gggaggcagc tgggagaggt tggttcaatc agttaaaagg aatctaacgg aagtgctcaa      5640
     gtgtaagcga ccaacagacg aggaactgcg tagcgcgtta acacagatag aatctgtact      5700
     gaacagtcgg ccgttgactg aagtacccgt ggacaacgaa tcagagccgg cgcttacccc      5760
     taaccatttt ttattggggt catcggatgg atcgaaacca atgacactct acgacgataa      5820
     cgtccaggtg gtccgacgtg gatggcaagt gtcacagatg atagcaaacc aattttggag      5880
     acgctggctt actaactacc ttcccgtaat cacaaggcga actaagtggt tcaaaaaggt      5940
     aaaaccaata gcggtaggtg acgtcgtcgt cattacagat ccggagttac cgaggaattg      6000
     ctggccaaag ggccgagtta ttggtacagt agagaaaggc ggacaggtac gtagagcaac      6060
     agttcaaaca agcaaagggg tttacgagcg tccggctgtg aaactggcgg tacttgatgt      6120
     ttggagcgaa agtgggtaag ccaaatcttg gagttggcat accggggggg actgttacaa      6180
     cccctcggtg ttg                                                         6193
//
ID   BEL-649_AA-LTR repbase;    DNA;    INV; 651 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-649_AA_;
KW   Pao_Bel_Ele107; BEL-649_AA-I; BEL-649_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-651
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 651 BP; 241 A; 118 C; 102 G; 190 T; 0 other;
     tgtcgctcct aacaacgtta ttgatcatgc ccctctgtgc gataaggttg cgcgcccatg        60
     gacttctgtc atcttgccca tgtattggac tagaataaag cgatcatgga aaacaaatct       120
     gaaatagtga aaacgaaagt cattggagac acatgcagat ttgcttaaag ctagttattt       180
     acagttttac ttaatctatt atcattaaaa ttacctaaaa ctacatgctt atatctatga       240
     aggtagtaca atgaatttta cgaatataaa cggatttacg aatataaatt agagtgtttt       300
     ttccctagat atctcgataa agttcatgcg acttatgcta gagttgatgc taaccttaaa       360
     ttattagatc taaaattatc accttcaggt aactaagata aaatacatat gaattagaca       420
     aaatacttac taaatgacat ataggcagac cttatagagc taatcaggga cattggacat       480
     aggacggaca aagaaacgaa gattgactaa acgtgagtac tattttcaac catacaaagc       540
     aattactcaa ctaataaaat aattacatgc aggatattaa aatatctcca aatacaagcg       600
     gatattataa atctcggaag acctctcttt cttcgccacc gaaacccaac a                651
//
ID   BEL-64_AA-I repbase;    DNA;    INV; 5696 BP.
XX
AC   supercont1.274;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_AA_;
KW   BEL-64_AA-LTR; BEL-64_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5696
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.274; Positions 1237570 1231875.
XX
CC   Positions [4725-5285] - Integrase core
CC   'GTGGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           383..2413
FT                 /product="BEL-64_AA-I_1p"
FT                 /translation="MKRNLMEEETKLREAELSKQKALQEKMMMMRRESMEK
FT                 KKELMRQQAELSESSSSSNVSKSERIKDWITSQQQTEGDNLVNHTPRISTS
FT                 NHMLNPAASQQQSKLVAPSVPTSQLAKLSLHDEVMHPILPNAYMQIAARQV
FT                 TGKDLPVFSGNPEDWPMFIRTYEETTLACGFSDVENLVRLQKCLRGNALET
FT                 VRSRLMMPAGVPHVIKTLQMRFGRPELIIRSLLERVRSVSAPKPERLDTLI
FT                 DFGLAVENLVVHLQAAKQDNHLNNPVLLQELVSKLPAQLRLDWARYKVLHQ
FT                 DSTLVAFGEFMNELIQAASEVTFDLPINLTAKTETSRNREKAFVHTHDTID
FT                 IETRITGAVRKLPKPCIVCSATGHRVAECEEFKVKSVEERMKIVRQHNLCR
FT                 TCLNFHQKWPCRTWKGCSIEQCHEKHHFLLHPLTPTTSTHLSTSHNSLFNK
FT                 SCERYPYFRILPVIVSFANKQQTIFAFIDEGSSSTLLDRSIAEQLGLDGPK
FT                 EPLTLQWTGNVARRESNSKRVRLQIAGTGKTNMFPIEEAHTVERLLLPKQS
FT                 LSYGTLAERYPHLRGLPIADYEHAEPKILIGLDNLRLCIPLKIREGQHNDP
FT                 IAAMCRLGWTIFGYGARTSMPTVSANFHAPAAQDVDHELNEQLSDFFSLDQ
FT                 LGTKPPFESRCESQKDFGGNNSTSFRQI"
FT   CDS           2823..5654
FT                 /product="BEL-64_AA-I_2p"
FT                 /translation="MFLRILIRPQDSQSQRFLWRENSGDEPSVYIIDVATF
FT                 GSTCSPSSAQFVKNANAKEHMESFPRAASAIIRYHYVDDYLDSFETEEEAI
FT                 AVVNQVKFIHSTGGFNLRNCLSNSEEVLLAIENTSENAAKQLSISRAEKIE
FT                 SILGMKWNPSKDVFIYTLTLRDDLLKVIEPSHVPTKREMLKLVMSLFDPLG
FT                 FMTFYLIHGRALIQDVWATGVDWDVPINHDLCKRWWQWISFLPSVSNLKIP
FT                 RCYFRGQINDRKQLHIFVDASDAAYACVAYLRGNGDQGVEVALVGAKSKVA
FT                 PLKVLSIPRLELMAAVIGSRLADSVIASHSYDIAETYLWTDSATVLAWINS
FT                 DHRRYHKFVGVRIGEILSLTKVNQWRWVPTRQNPADDATKWGIGPSFEPCS
FT                 RWFCGPTFLSQHEDEWPRKQRTTSTNDELIGNFNVHLVMSTSLIEFTRFSK
FT                 WERLLRTQAYVLRFISNLGCRKTGKSKVTGILNQEELKQAERELWKQAQSE
FT                 AYSQEQKVLLDSQGSPDIRHRLVPKSSPLYKLWPYIDLDGVIRMRGRIGAA
FT                 WYAQPDAKYPVILPKSHRVTLLLVDYYHRHFQHANQETIVNEMRQRYEIAH
FT                 LRTIVKQTARNCAKCRIKAAVPRSPPMAPLPVQRLEPFVRPFTFVGSDYFG
FT                 PLTVKVGRSEVKRWVALFTCLTVRAIHLEVVHSLSSESCILAIRRFIDRRG
FT                 APAEFFSDNGSSFIGANKQLQLEIAAMNEVLASTFTNTNTRWNFNSPSAPH
FT                 MGGVWERLVRSVKSAICTIIDAPRRPTDEVLETILFDAEAMINSRPLTYIP
FT                 LETADEESLTPNHFLLGSSSGIKQPPSEIQNPHINLRSCWNLVQHMTNTIW
FT                 KRWIKEYLPVITRRCKWFDEVREIQEQDLVLIVEPSIKNRYIRGRVEKVFP
FT                 GRDGRVRQALVRTATGVYKRPAVKLALLDLGQHGKPGKDS"
XX
SQ   Sequence 5696 BP; 1662 A; 1277 C; 1379 G; 1378 T; 0 other;
     aaatctttaa gaattttgcc accaaggatg ctggctggga atacgtccga ccacaactgc        60
     cattcgtgca acgagcatga cgtcatggat tcaatggtgg cctgcgacaa ttgtggtgat       120
     tggcaccact ttaagtgcgt tggcgtagat aacacggtca aggaccgtaa ctggatctgc       180
     aagaagtgtg aacaaggagc cttttctggt ctgcttaacc tcccgcaagc gaaagataaa       240
     ccgataaaaa gtggcggcag taagtcatcg aagccgcgca gcagaaaagc ggaaaaaacg       300
     gttggatcta aaatgagtat cacgtctagt gctcgtgccg cggcattcgc tcgagttcgc       360
     cgaggagcag cgtaagcttg agatgaagag gaacttaatg gaggaagaaa cgaagctccg       420
     agaagcggaa ttatcgaaac agaaggcatt gcaagaaaag atgatgatga tgcgaaggga       480
     atccatggag aagaagaagg agttgatgcg acagcaagct gaactaagtg aatcttcgtc       540
     atcgtctaat gtttcgaaat ccgaaaggat aaaagattgg attacttccc aacaacagac       600
     agagggagac aatttggtta accatacacc gcggatctcc acgtcgaatc acatgttgaa       660
     cccagctgca tcacaacagc aaagtaaact tgtagcacca agcgtaccta cttcacaact       720
     cgcgaagctt tcgttacatg atgaggtaat gcacccgata ttgccgaatg cttatatgca       780
     aattgccgct cgccaagtaa cggggaagga tcttccggtt ttcagtggta atccggagga       840
     ctggccgatg tttattcgga cctacgaaga gaccaccctt gcttgtggtt tttcagacgt       900
     cgaaaattta gttcgtctcc aaaaatgtct acgcggtaac gccctagaga cagtacgcag       960
     tcgtcttatg atgccagctg gtgtgccaca cgtgataaaa acactgcaaa tgcgctttgg      1020
     ccgaccggag ctcatcatcc gctcactact tgaacgagtt cgtagtgtgt cagcacctaa      1080
     accagaacga ttagatacgc ttatcgattt tggactagcc gtggagaatc tggttgtaca      1140
     tcttcaagct gcgaagcaag acaaccattt aaacaaccca gtgttactac aagaactggt      1200
     ctcgaagctg cccgcgcagt tgagattgga ttgggcacgg tacaaggtac ttcatcaaga      1260
     cagcacactc gtggcatttg gcgaatttat gaacgagctc attcaagcgg caagtgaggt      1320
     gacgtttgat ttgccgataa atctgacagc gaaaaccgaa acgtcgagaa atagggaaaa      1380
     ggcatttgta catacccatg acaccatcga tatcgaaacg aggatcacag gcgcggttag      1440
     gaaattgcct aaaccatgta tcgtatgcag cgcaactgga catcgtgtcg cggaatgcga      1500
     ggaatttaag gtgaagagtg tcgaagaacg gatgaaaatt gtgcggcagc ataatctgtg      1560
     ccgtacttgt ttgaattttc accaaaagtg gccctgtaga acatggaagg gctgcagtat      1620
     cgagcaatgt cacgagaaac atcattttct gttacaccca ctgactccta ctacttctac      1680
     gcatttgtca acaagccata atagtttgtt caacaagagt tgtgaacgct atccgtactt      1740
     ccgcatactg ccagtcattg tatcattcgc caacaaacag caaacgatat tcgcctttat      1800
     cgacgaggga tcctcctcaa cactcttgga ccgatcgatt gcagaacagc tgggcttaga      1860
     cggtccgaaa gagcctttga cgctacagtg gacgggcaac gtcgcacgtc gagaatcaaa      1920
     ttccaagaga gtgcgtctac aaattgctgg taccgggaag actaatatgt tcccaataga      1980
     agaggctcat acggttgaac gacttctatt gccgaaacag tcgctgtcgt acggaacctt      2040
     agctgaacga tatccgcatt tacgtggctt acccattgct gactatgaac atgctgagcc      2100
     gaaaatatta attggactgg acaatttaag attgtgcata ccactaaaaa ttcgggaagg      2160
     acaacacaac gatccgatcg ccgcaatgtg cagattgggt tggacgattt tcggatacgg      2220
     tgcgcgaaca tcaatgccaa cggtttcggc aaattttcat gcaccggctg ctcaagatgt      2280
     tgaccacgaa ctgaacgagc aactcagcga ttttttctcg ttggatcagc taggaactaa      2340
     gccacccttc gaaagcagat gcgagagcca gaaagatttt ggaggaaaca actcgacgag      2400
     ttttcgacag atttgagaca ggtctactgt gtaaatcaga cgacattgaa tttcctaaca      2460
     gttttccaat ggcgttcaga agactacaat cgttggaaag gaaattagcg aaggaaccga      2520
     ccctcaaagc tcgtgtccat caaaaattga atgagtacgt tgcaaaagga tattgtcacc      2580
     gggcaagtgc gagtgaattg agcttctccg acagcaaacg tgtctgatat ctcccgttgt      2640
     ccgtggttgt taaccctaaa aagcctaaca aggtgagagt cgtctgggac gcagcagcaa      2700
     aggtggacgg tacatcgttc aattcggtct tgcttaaagg ccctgacttg ctgactagcc      2760
     ttgttgcaat tctttatcac tttcgagaac ataggatcgc agtaactggt gatatagaag      2820
     aaatgtttct tcgcatccta atacgtcccc aagatagcca gtcgcaacga tttttgtgga      2880
     gggaaaactc tggcgatgaa ccatcagtgt atattatcga cgttgccacc tttgggtcga      2940
     cttgctcccc aagctcagcc caatttgtga agaacgctaa tgcaaaagaa catatggaat      3000
     catttcccag agcggcttca gctatcatta gatatcacta tgtggatgat tatttagata      3060
     gcttcgaaac ggaagaggaa gctatcgcgg tagtcaacca ggtaaaattc atccactcca      3120
     ccggaggttt caaccttaga aattgtttgt ccaactcaga agaagttctg ctagcaatcg      3180
     agaacacttc agaaaacgca gcaaagcaat tgagcatatc gcgagctgaa aaaattgaat      3240
     ccatattggg aatgaaatgg aatccttcca aagatgtctt catttacacc ttgactctac      3300
     gtgacgatct tctaaaagtg attgagccct ctcatgttcc caccaaacga gaaatgctca      3360
     agcttgtaat gagccttttt gatcccctgg gatttatgac attttacttg atccatggaa      3420
     gggctctgat ccaggatgtg tgggcgactg gagtggactg ggacgttcca atcaatcatg      3480
     atttgtgtaa aagatggtgg caatggatca gttttctacc ttcggtgagc aacttgaaaa      3540
     ttcctagatg ctactttcgg ggtcaaatca acgatagaaa acagttgcac atattcgttg      3600
     atgctagtga tgcagcatac gcatgcgtgg cgtatttacg aggtaatgga gaccagggag      3660
     tagaagtagc attggtaggt gcgaaaagca aagttgcgcc acttaaagtg ttatccatac      3720
     cgcgacttga gctaatggca gcagtgattg gatctcgttt ggcagattca gtgatcgcct      3780
     ctcattccta tgatattgcg gaaacttatc tttggacaga ttccgccacg gtcttagctt      3840
     ggatcaactc agaccacagg aggtatcata agtttgtcgg agttcgaata ggcgaaatac      3900
     tttcgctaac aaaggtgaac caatggagat gggttcccac gaggcaaaat ccagcggatg      3960
     atgcaacaaa gtggggaatc ggtcctagct ttgagccctg tagtcgttgg ttttgtggac      4020
     caacattcct ttcccaacac gaagatgaat ggccaagaaa acaaaggact acatccacca      4080
     atgatgagtt gatcggtaat ttcaatgtgc accttgttat gtcgacatcg ttgatagagt      4140
     tcacacgctt cagcaaatgg gagcgactgc taagaacaca agcgtacgtg ctcaggttca      4200
     tttctaacct tggctgtcgt aaaacaggga aatcaaaagt aaccggaatc ctgaaccaag      4260
     aagaactgaa acaagcagaa agggagctct ggaagcaagc acaatctgaa gcgtatagtc      4320
     aagagcaaaa ggtgctgctt gattcccagg gaagcccgga tattcgtcat cgtttggttc      4380
     ctaaatcgag tcctttgtac aagttgtggc cctacattga cctagacggt gtgattagga      4440
     tgcgaggaag aatcggcgcc gcctggtatg cgcaacccga cgcaaagtac ccagtaatac      4500
     taccgaagtc acatcgagta acattgcttc ttgtggatta ctatcaccgt cattttcaac      4560
     acgctaacca agaaactatc gtgaatgaaa tgaggcaacg ctacgaaata gcccatttac      4620
     gaacgattgt gaagcaaacg gcaagaaact gtgctaagtg tcgcataaaa gcggcagtac      4680
     ctcgatctcc acctatggct cctcttccag tacaacgcct tgaaccattt gtaagacctt      4740
     tcacgtttgt gggctcagat tactttggcc cgttgacagt gaaagtcggc cgttctgaag      4800
     tcaaacgatg ggtggcactt ttcacgtgcc ttacggtacg tgctatacac ctcgaagtgg      4860
     tgcatagctt atccagcgaa tcatgtatac tggctattcg acgtttcatt gatcgtcgtg      4920
     gagctccagc ggagttcttt agcgataacg ggagtagttt tataggagct aataaacagt      4980
     tgcagctgga aatcgcggcc atgaacgaag tgctagccag cacgttcacg aatacgaaca      5040
     ctcgatggaa ctttaattcg ccgagtgcgc cccacatggg tggcgtatgg gagcgcctag      5100
     tgcggtcggt gaaaagtgcc atctgcacga ttattgatgc tcctcgtcgg cccaccgatg      5160
     aagtacttga aacgattctc ttcgatgcgg aagccatgat aaattcacga cccctcacat      5220
     atataccact tgaaactgct gatgaagaat cgttaactcc gaatcacttt ttgctgggaa      5280
     gttcttccgg cattaagcaa cccccctcgg agattcaaaa ccctcacatc aacttgcgta      5340
     gctgttggaa tttggttcaa catatgacca acaccatatg gaaaagatgg atcaaggagt      5400
     acttgccagt aatcacccga cgctgcaaat ggttcgacga agttcgcgaa attcaagaac      5460
     aagaccttgt gctgattgtc gaaccatcga tcaaaaaccg atacattaga ggacgagtcg      5520
     aaaaggtatt cccgggacga gatggtcgtg tgcgccaagc tttggttcga acagcaaccg      5580
     gagtgtacaa gagaccagcc gtgaagcttg cactgctcga cctaggacag catggtaaac      5640
     ctggtaagga ctcttagaac tgatcaatcg ccttaccagc ctttacggtc ggggga          5696
//
ID   BEL-64_AA-LTR repbase;    DNA;    INV; 661 BP.
XX
AC   supercont1.274;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_AA_;
KW   BEL-64_AA-I; BEL-64_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-661
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.274; Positions 1231874 1231214.
XX
SQ   Sequence 661 BP; 214 A; 112 C; 130 G; 205 T; 0 other;
     tgttgcggca cgcagcaagc ccctcggctg gctttggatc acactggcta ccacagtgca        60
     ttggtacgga atagatgttg gtagcaggta agaaacaagg atgacataat ttggaaacgt       120
     tccgtcaatc gtgatgataa gcaaaattga tcacttcaca gttatagttg ctattgtggg       180
     aaatttatta ttgattatta ctgaactaat ttacattgaa gttgaaaatt aaaagttgaa       240
     ttactattac tattactatt gaatacggta agaaagtgta gaatatcctt atcaaagacc       300
     aatggtttaa tattagattt gttttgcgtt tagaatctgg catttcgaga tagcgtcaaa       360
     ttatacccaa tcaggatcgt tccattgcat tggtaattcg aatacaggaa ataagtatgc       420
     attaatttct tctcataaga taggtgaatg atcgaatgtc ttttgtatag ccgaaatatt       480
     agcaagccac tttagcagtc ggaacaacgt agtccccatc acacggtaga acaccaaaat       540
     tgtaagtgta ggttgttacg aatgtgaatg ctaattgtta aatcaataaa cttattccag       600
     cttaaagcga tcaatcacac atcccgtgtt tagctacaaa gatttggtgc ctctccgtac       660
     a                                                                       661
//
ID   BEL-64_CQ-I repbase;    DNA;    INV; 6346 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_CQ_;
KW   BEL-64_CQ-LTR; BEL-64_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6346
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 281-281 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4993-5571] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2416..5961
FT                 /product="BEL-64_CQ-I_1p"
FT                 /translation="MELYYDLLLDGFTKLGPEKPILQNTVFGWVASGKIGS
FT                 GQAEGALKMARVCSDQSLDQLLNRFWEVESCRSASTQSMEEVACEEHFVGN
FT                 TYRDESGRFVVTLPKQPSVLNQLGDSKKIATRRFLALERRLDANPQLKQVY
FT                 TNFIEEYHQLGHMREVEDVSSHPAGPSYYLPHHGVEKADSTTTKLRVVFDA
FT                 SCRTDSGVALNQALMVGSVVQDDLFAIRLRFRMNRIALIADIEKMYRQIRI
FT                 HPSDYQLQRILWRNSSSEPLRTFELTTVTYGTASAPFLATRCLNELSKQGA
FT                 EDYPLASLALGRDFYVDDMLTGVYDEEEGEELCKQLLSLLPSAGFSLRKWA
FT                 SNSAEVLSKIPPELRDERSVLGLESHTTPIKTLGIQWQPATDTYSYAVPIW
FT                 STQSVITRRVVASDLAKLFLPLGLLGPVIVLAKIFVQSLWEENKSWDAPLK
FT                 PEQQQYWWEYRNSLEDIPSISIPRWVACASDPVLVELHGYCDASERAYGAN
FT                 IYIRTVSRDGTISVRLLCAKSKVAPSGKSKNSVLLSLPLLELSSALLLAHL
FT                 YHKVAASLDLKTKPFFWTDSMIVLRYIRSPPARWKKFVANRVAEIQRLTAG
FT                 GIWSHCPGAENPADIISRGMSPAELRDTPAWWISHEWLNRESRFWPPINQP
FT                 LPDYLPGIAQAERAVALPVQAVKPNELFAIQSSFPLLLRLVAYLRRFQHNA
FT                 SSRDRNNRRIGHLTTLELTDATKILVRIAQREAFARDLAEIESSGQVSHRS
FT                 ELKNLAPILVDGVLRVGGRLKHAAISEDRKHPMILPARHPLTERILVHYHE
FT                 KHLHAGPQLLVACVRERFWPLRVRNSARTIVHTCVNCYRCKPTTSEQLMGD
FT                 LPQQRVTPTLPFLNTGVDLCGPFQYRKAPRAAPTKCYVAVFVCLVTKAAHI
FT                 ELVYDLSTAAFLAALHRFIARRGKPKLIQCDNATNFKGAERELEKLRKQFI
FT                 NQQLQAAVVNRCADDGIDFKFIPPRSPNFGGLWEAAVKSFKKHLRATIGNS
FT                 VLSQDEFVTLLARIEACLNSRPLTPLSADPNDLEVLTPGHFLTFRPLTSPP
FT                 EPDLSEIPRNRLDRWQENQELLRRIWKRWTIDYLSGLHPRTKWTQKRDNIN
FT                 VGTLVLLKEDNLPPLKWRYGRVIRVCRGDDDNIRVVVVRTADGEYTRSISK
FT                 ICVLPLRQPIADVAGAANPNPED"
XX
SQ   Sequence 6346 BP; 1509 A; 1823 C; 1630 G; 1373 T; 11 other;
     ttttttggtc cttcgattgc cggatgtgcg cgatttatta cggacaatcg cggacatttc        60
     ttgtcgtaca tttcgctggc gtcaaaagtg gactttatcg ggtcgtgtgg ctctcgaaca       120
     ccacgccgcg tgtgaagtgg gtgcaatagt gaaaaaaaag gcgctaactg tactgtcgcg       180
     gtaaactgcg ctgaagatac atgtcccgga aacagtgata agtgcttaaa aattgctggc       240
     gtgttcttcg attaattggc gagtttcttc gatctgctgc ctcctgcacc acgaggtcac       300
     cacgtggcac ggcacggcgc ggcacggcgt ggcttgggct gtattgtgcg aggaggacaa       360
     agggccttga ctggatcaaa ggtcatcgta gtctatcgat tgacgaccac gtgagtactg       420
     catgtctgtt gtggtggact gattcgtttg ctttgggtgt tcgatcgtca attctgcgct       480
     catctcgacc tggttggtag tttgcgcagc gtgttttttc cgcatttttg ggctttgttg       540
     agcactgctg gtcgctgtgg gacatggctc ctggtctacg tgcgttgttc caccaagagc       600
     ggttctatct ggacacactt accaacgcaa agcagtttgt ggagggttac aaagaggctc       660
     agcatagtgg acaattagcg gggtggaagc agcgaatcga tggtcttgat gacaaatttc       720
     atgctaaccg tctagccatc gaactgtcgc tggacgatga tgaggataag tccaaatcag       780
     acaaggtgac ggcgaagccc gaggatgccg ctgcgcaagc taaagaggac gctgacaagg       840
     atgccgctga agaaagcaat cgacttatac gcaagaaatt cgaactggac tacgttcttg       900
     tgtacagctt cctggtcaac gagatccaga aacaaactgt ggctccccaa gctgaagtca       960
     accctgcctc gactggacgc tcgcgcgtca agctgccgga catcaasctg cccaacttta      1020
     atggctcgat cttggattgg atcacgtttc gtgacacatt cgaaagcctg atccactcca      1080
     acgccsacct gccgcccatc gataagttca cktacctagt ggggtcgatg acgccgaagg      1140
     cgagggagag gattgacaac atcgatgtta ctgctgctaa ctatccactc gcctggsagg      1200
     cattggagga gcggttcgac aacaagaagc tcatcgtcaa ggcgtacatg gatgttctct      1260
     tcgcgatcga gccgatgcgg aaggagtgct acgagtccct ggcgcascta gtcgacgggt      1320
     tcgagaggaa cctgaacatg atcaagaagc tggacgtcgs aacggasggc tggggcgctg      1380
     ttctggstca catggtgtgc gcscggctgg atcattctac actgagacag tgggagtcgc      1440
     accacagttc caaagacgtt ccggactaca aggagctgat sgagttctta aagggtcacc      1500
     tctccgttct ccagtcgctg cctacaaagt cgtcgtcgaa agagtctcac aagcaagaca      1560
     caggtcggcc gctgaaatcg aagaccgtcc acgcagtcac tagtccagcg accggcttga      1620
     gaagctgccc gttctgctcc aagtccacgc actctgcgtt taaatgcgaa gtcttccaag      1680
     ggttgccagt cccgcaacga ttcgaccttg tgaagaagaa gaatctgtgc ataaattgct      1740
     tgtcgtcgga gcacatggtt cgcaattgct cgtcaggcac ctgcagggtc aacaagtgcc      1800
     accaaaaaca ccacaccatg ctccacctat cagcggacga tcgcccaacg aatcccaaca      1860
     aaccccagtt gtcgtcgtcg ctcacatccg cccttgtcgg aaagcccgcc gaacccgtcc      1920
     tcctcgcagt cgtcgccccc tctcccccgt cgcgcatccc aaccgccctc tgccacaagc      1980
     ctccccgtgt ccaccaactc gcccggagcc cctcgagccc ttcctgccac cgtgctgctc      2040
     cagacggcta tcgttaaggt cctcgacttc tacggamatc accagtgggc acgagtccta      2100
     ctcgatccag cgtcgcagct gaacctgatc accgagaaca tcgtgcagaa gctgaaactg      2160
     acgccgttac aagtgtcacc aagcaatcgg aggagtcgga aactcgatgg tgacatcgtc      2220
     gcacgctgtc cacgttcaga ttgggtcaca ctgctcggac ttcaagtccg ttcacgatcg      2280
     ttccacattc tgaaaaggat cacccaagat ctacctacca gaactttcga cccaacatcg      2340
     tggaaacttc cgacaaacat caccctagca gatcccaaat tcttcgaacc tagctcaatc      2400
     gatctactcc tcggcatgga actctactac gacctgctac tagacgggtt caccaagctg      2460
     ggacctgaga aaccgattct tcagaacaca gtcttcggct gggttgcctc tgggaaaatt      2520
     ggatctggcc aggcggaagg agcgctgaag atggcccgtg tgtgcagtga ccagtctctg      2580
     gatcaacttc ttaaccgctt ttgggaagta gaatcctgtc ggtcagcaag cactcagtcg      2640
     atggaagaag tcgcgtgcga ggaacacttc gttggaaata cctatcgaga cgagtcaggt      2700
     cggtttgtag tcacccttcc gaaacaacca tccgtcctga accaactagg agactcgaag      2760
     aaaattgcca caagacgatt tcttgccttg gaacgtcgtc tcgacgcaaa ccctcaattg      2820
     aaacaagtct ataccaattt cattgaggag tatcatcagc tggggcacat gcgcgaagtt      2880
     gaagatgtca gctcccatcc agctggtccg tcgtactact taccacacca cggagttgaa      2940
     aaggcggaca gcaccactac aaaactacga gttgtattcg acgcctcctg tcggacggac      3000
     agtggagtcg cgttgaacca ggcactgatg gtcggatcag tggtccaaga cgaccttttc      3060
     gccatacgtc ttcgttttcg tatgaatcgg atcgccttaa tcgcggacat tgaaaaaatg      3120
     taccgtcaga ttcgcatcca tccttcggac taccaactcc aacgaatcct ttggcgcaat      3180
     tcctcctccg aaccgcttcg cacgtttgag ctgacgacag tcacctacgg aactgcctca      3240
     gccccgtttt tggccacgcg atgcttgaac gagctgtcta agcaaggcgc ggaggactac      3300
     ccacttgcgt cactggcatt gggtagggac ttctacgtgg acgacatgct aaccggagtg      3360
     tacgacgaag aggaaggcga agaactctgc aagcagctgt tgtcactttt gccatctgcc      3420
     gggttcagtc tacggaagtg ggcatcaaac tccgccgaag ttctctcgaa aatacccccc      3480
     gagctgcgcg acgaacgatc cgttctgggg ctggaatccc acacaactcc aataaaaact      3540
     ctcggaatcc agtggcagcc agctacagac acgtacagct acgcggttcc aatctggtct      3600
     acacagtctg tcatcacacg tcgcgtcgtc gcgtccgatc tagccaagct gttcctaccg      3660
     ctcggcctgc tgggtccggt aatagttctt gccaagatat tcgtccaatc tctttgggaa      3720
     gaaaacaaat catgggatgc accgttgaag ccagaacagc agcagtattg gtgggaatat      3780
     cgcaacagtc tagaagacat cccatcaata tccattccac gatgggtagc gtgcgcgagt      3840
     gatcctgtgc tcgtcgagtt gcacgggtac tgcgatgcat ccgaacgtgc gtacggagcc      3900
     aacatctaca tacgaaccgt atccagggac ggcactattt cggtgcgact gttgtgcgcc      3960
     aaatcgaagg tggcgccttc gggaaagtcc aagaattcag tactactatc cttaccactg      4020
     ttggagctct catcggcact tctcctggct cacctgtacc acaaggttgc cgccagtctc      4080
     gacctgaaga cgaagccgtt tttctggacg gactcgatga tagttctgcg ctacattcgc      4140
     tcaccaccgg cccgctggaa aaagtttgtt gcaaaccgag tggcggagat ccaacgactc      4200
     accgccggag ggatctggtc gcattgccct ggggccgaaa atccagcgga cataatctca      4260
     cgtggaatga gccccgcgga gctgagagac acacccgcgt ggtggatctc acacgagtgg      4320
     cttaatcgag agtcccgatt ttggccgccg ataaatcagc cccttcctga ctacctcccg      4380
     ggcatcgccc aggcggagcg tgcggtagcg ctcccggttc aagcagtaaa accaaacgaa      4440
     ctcttcgcga tccagtcatc gttccctctc ctgcttcgtc ttgtcgccta ccttcgtcgg      4500
     ttccagcaca acgcgtcctc tcgagatcgc aacaaccgga ggatcggaca cctaacaact      4560
     ctcgagctga ctgacgcgac gaagattctt gttcgaatcg cacaaagaga agccttcgcc      4620
     cgagatctag ccgaaattga atccagtgga caagtaagcc atcgttcgga actgaaaaat      4680
     ctggcaccta tcctggtcga tggggtcctc cgtgtgggtg gtagactaaa acacgcagcc      4740
     atctccgaag ataggaaaca tcccatgatc ttgccagctc gtcaccccct gaccgagcgc      4800
     attttggtgc actaccacga gaaacatctc cacgctggac cgcagcttct cgtagcctgt      4860
     gtcagagaaa gattctggcc ccttcgcgtg cgcaattcgg cacggactat agtgcatacc      4920
     tgcgtgaatt gctatcgttg caagcccacc accagcgagc agctcatggg agacctgccc      4980
     caacaaagag tcacacccac gctgcctttc ctcaacaccg gcgttgacct gtgcggaccg      5040
     ttccagtatc gcaaggcgcc gagagcagca ccaactaaat gctatgtggc cgttttcgtg      5100
     tgcctcgtca caaaggctgc ccacatcgaa cttgtctacg accttagtac agccgccttc      5160
     ttagcggccc tgcacagatt tatcgctcgt cgagggaagc cgaagctcat ccagtgcgac      5220
     aacgcaacga acttcaaggg agcagaaagg gaattggaga agttacgaaa gcagttcatc      5280
     aaccagcaac tccaagccgc agtggtcaac cgctgtgcag acgacggcat cgactttaag      5340
     ttcattccgc cccgcagtcc caattttggc ggattgtggg aagcggcggt gaagtcgttt      5400
     aaaaaacacc tgcgtgccac aattggaaat tcggtactgt cgcaagacga gttcgtcacc      5460
     ctactggcac ggattgaagc ctgcttaaac tccagaccgt tgactccgct ctctgccgac      5520
     ccaaatgacc tggaggtctt gaccccgggc cacttcctca cttttcgtcc gctcacttcg      5580
     cctcccgagc ccgacctgtc cgagattcca cggaaccgtc tcgatcgctg gcaggagaat      5640
     caagaactac tacggcgcat ttggaagcgt tggactatcg attacctctc gggcttacac      5700
     ccacgcacga agtggacgca gaagcgtgat aacatcaacg tcggcacgtt agtgctactc      5760
     aaggaggata atctgccacc cctgaagtgg cgctacggtc gtgtgattcg tgtctgtcgt      5820
     ggcgatgacg acaacatccg tgtcgtcgtc gtacgcaccg ccgacggaga gtacacacgg      5880
     tccatctcga agatctgcgt cctgccgtta cgccaaccca tcgctgatgt cgctggcgcg      5940
     gccaacccga accccgagga ctaaatcttc catcgcaacg ctgcggcgtt gcgcaccggg      6000
     aggcctacgg gcctccaacc cccgtaagtt gttttaatat tgaatttgca aaaagctcat      6060
     gaatttttcg tcccccggca tgttttggct catcgatggc gactccaacc cacaaccatg      6120
     agcgcgccca acgcggacga tcaccgagca tcaaccgaga acgcgcagag gatctcccgt      6180
     gacgtcacca ggagcagcaa tttggaagga gaggagagcg gtcgatagtc gaagcagagc      6240
     tgctgtggac aacatcaaca aagatgacct tggccttctg cgacgaggca gaagggtgcg      6300
     atcgcgtgta ttggttgaaa gctgaccctt tcaacggggg ccggca                     6346
//
ID   BEL-64_CQ-LTR repbase;    DNA;    INV; 366 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_CQ_;
KW   BEL-64_CQ-I; BEL-64_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-366
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 282-282 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 366 BP; 96 A; 86 C; 75 G; 109 T; 0 other;
     tgttgggaca cactagtgcc caaacacgaa gccgtataga taagagagaa tttgaattcg        60
     gttacattag tattaataca ctatcacctt atcacaacgc tcggccagcg agcccgatca       120
     cgagagagtt tggctaccta ctttgaaggt caagttcgtg gtgatcgcca ctcgtaagtt       180
     aagttgaaat atacagttcg atctgacctc acgcgttttt cgttcctttg gcaataaatt       240
     tctcgtcgaa ataaattcgt ctttttcgat tgccaattac gacgcgtttt ttgatcctcg       300
     aatattctgt cgcgggagtg tttgaaggcc accgatatca cgccctttga cgaccattcc       360
     ctaaca                                                                  366
//
ID   BEL-64_DTa-I repbase;    DNA;    INV; 4973 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   23-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4973
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (23-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Paired LTRs are 95% identity to each other.
CC   3'-end is uncertain.
XX
SQ   Sequence 4973 BP; 1473 A; 1222 C; 1030 G; 1248 T; 0 other;
     tttggcgacc gtgacaggac ccagacaaat agtaaagttc gcgtggctgt ttagaggtta        60
     taattttatt tcataaaagc cgagaaccaa tccgacattg gccagcctgc aaccgcagca       120
     tcttcagtgt gatcgtcgtt gaagacacca tcaaggcacg cactggattc ccgcaaatca       180
     aaaggcgcaa catcggcagt ggatcggaaa ggcgcaggtc gcaatcgctt gaaaacatct       240
     ccacaagcgg gattagtaca accaagatga ttcccttcct ctacccgacc agtgagattt       300
     gccgctacat aacctgcgac attcgcacat acgcaaacta cgccgtaatt atataatcgt       360
     gtgccacgca cacaataacc tgtaagtaga cttacaaata catacaaaca taaaattctt       420
     gctggtagtg tgattacttt gctgaaggtg gtcaattacg gcagaaataa ccgttgcttt       480
     acgcatacca atacgttctg attctgtgtc tgctttttgc tcaaaactat aacgccgggc       540
     tgcacacgtg gtacagtttc gccttcagac tagcttttcg tttcttcttt gaaccgtagt       600
     ttctcagctc tttactctgc cgccctttcg tacaaccgtt taaaatgacc aaagattcgg       660
     cagcagaggc agttgacgca aaattgactc cccttcgact acagcgctca aaaatggaag       720
     ccaacatcga aaacttagcg gccagagtga acagggagtc cgatgcaacc gagctcaacc       780
     acgaagagtt agattgccat ttacaaattt tggagtctta ctttcgccag ttgtgtcaat       840
     tgcaaacacg aattgaagag ctgaattatg cggacgacgg tagagctaag gtggaaacat       900
     tgttcattaa agccaaaagc aaaataaaat ctttaatgag taaacacaac cattcagcag       960
     acgtcagtgt tttgaatgcc tccgccagtg tacattcttc ccgattgcca aacttgaagt      1020
     tgccgcactt cgatggcaaa tattcagact acaagcggtt tgaagtcgct tttacaaatc      1080
     tcgtgcacag tgaccctgga atctcagata ttgacaaatt caattatttg ttgagctgtg      1140
     tgtcaggcgc agcctgagga caattattca aaggcattca aacggctgaa agaacgttac      1200
     gacaactttt caacttgcaa tccatctcga actcagacgc tacaggattg caacgccttg      1260
     tggacacatc atcagcgatc cgaggatcat tattatcatt gggatcaccg aacgacgtca      1320
     tgaacgctat catgataaac ttgcttctat ctaaggtcga tgccgagacg aggttaagct      1380
     acgatgagaa gcagtcattt gaaaagcttc cagactggga cgagtgctgc aagtttctga      1440
     cacaccgctg tcaattcttg gaaggccgat cacgcgccat catcaaaggt cgagccatcg      1500
     acacacagca acgacaaaag acaaaccaca tgcatttgtc caaatcgttc atcacaacaa      1560
     atgccagttg cacatactgt gactcgggca gtcactacat cacacaatgc aagtcgttct      1620
     ctgcacttca actcacgcag cggaaagact tcgtaaagaa agccatgctt tgctttaatt      1680
     gcttgcgcaa atcccatgtt attacggatt gttcatccaa atctcggtgc aaggtttgtc      1740
     agggcgctca tcacactctt ctgcatgcgt atagcccaag cccaattaag gctgattcga      1800
     tgacaaacca accacaacaa agcctggttc cagaacacgc tgattctaac cagcacagca      1860
     gacctagggt gtctctaata gcgcgcacgg ccaaaagagg catcatacct acagcactag      1920
     tgcagatcaa ggatggacat ggagacttcc aaattgttcg ggcacttcta gactcaggat      1980
     ccgaggtgaa tctgatcacc gaagaaactg ccaaacgact ccagctagaa aagtctcgcg      2040
     tttctcagtc cataagtggg gtttctaaca ctactcaaac tgtaaactac aacgtttata      2100
     cagttcttaa gtctcgcgtc tcggaattca agtggtgttc tcatttcgcc gtgatcaaac      2160
     ggatttgcaa ccaccagccc agcgaaccaa ttgacatctc acaatgggac attccaaatg      2220
     gattagtttt agctgatcca aactttgatc aatctcacag gatcgacgtg ctcataggaa      2280
     tagaaggatt cttcgaggcc attcgcagcg gcaagtgcga ggttggccca ggaatgcccg      2340
     catttatcaa cacagcattt ggctggattg tcggtggaaa cgcaacacac ctcgcaaatt      2400
     cagcaaccta caagtgcaat ctcattcagg aaaggatgtc tctcgacgaa tgcttgcaca      2460
     agttctggga agtggaggaa tacaaaaccg cacctcagag atttagtgaa gaggagcagc      2520
     tttgcgagca acattattcc gacaacgtag ctctcacaag cgacggccgt attcaggtgc      2580
     ggctcccctt taaaatcgaa caacaaaggt tagggcaatc gtatgatagt gcattcaaac      2640
     gattcataat gctggagcgc agactcaatc gcaatccatc actgaaggag ccctatatcc      2700
     aattcatgag ggagtatatt gagcttggac acatgtctcg cactacaaca gtggacacaa      2760
     gcatgccaca tttttatatc cctcatcact gcgttctgcg tccggaaagc ctaacaacca      2820
     agcttagccc tcaacgaact tttaatggta ggcccaacca tacaacagga tctcatcacg      2880
     actcttcttt catttcgact aaatcggtat gcactttctg gggacatatc aaaaatgtat      2940
     agacaatttt taatggatga aagagatcgg cgatttcaac tgattctgtg gagggagtct      3000
     gagagtcaca ccttgcacac ttaccagttg aacactgtaa cgtacggcgt atcagctgct      3060
     ccctttcttg caattcgcag tctttttcaa atcgctaatc tatatgaatt agaatttcca      3120
     cttgcagctc aagttttgcg ttcggactta tatgttgacg accttttaac tggtgccaat      3180
     gatatcgaag aagctgctca gaaaaagacg caaattacag agctactcag caaggcggga      3240
     ttaaccatga cgaagttcaa cagcaactca gctgttctag tggaatcctc tgacaacgaa      3300
     atcccgatgc aactaaacga atgcaaatca acaaagatgc ttggactcgc ttggcagcct      3360
     tcaaaggatt tgttcgtatt ccacaaccag gtggaatttt cggagaatcc gaccaggaga      3420
     acagtgctgt cagaagtggc acgagttttt gattcacttg gattaattgc gcccataatc      3480
     atgaactgca agatatttat ccaggatctt gttctaagga atctgtcgtg ggatgaactg      3540
     atcccagagg atttagtcaa tacttggaac cttttaaaac ttgaccttca aaacatttcg      3600
     caaatacaag ttccgcgctt cgtcttcaca tcaccccaca acaagggaga aattcacggg      3660
     ttcgcagacg catccaagcg tggatatggg tgttgtttat acgtgcgcac agaagtcgac      3720
     ggagttatca gaatccactt tctaatcggc aaatcaaagg tagcacccat caaaactctg      3780
     tccatcccga aattagaact ctctgcagca gttctactta gtcgaaccta ccacaagttt      3840
     caacagaaac tgcagcagta catatccaaa gtgtacttct ggactgatgc aaagactgta      3900
     ctgcaatggc ttcgcaagca ttcatcagtt ttgccaacct ttgaatccca tcgagtttcg      3960
     gaacttcagc aacaggataa gaacatcgag tggcgttatg tgcccactgc gaagaatccc      4020
     gcagacatag tgtctcgcgg ctgtagcgtt tcggagatac aagaaaacat gtggttcacc      4080
     ggtccaaact tcctcaagct tgcagaaaag gactggccga ctcttaaaga atctgttgct      4140
     tcacgacaag aaacagatcc tccattcaaa gttcagctac aaacctcatt aatcagcaac      4200
     attgagtcgt cggttgatat gaacatcatt gatcaggtga tcaataattc atcgtcttac      4260
     ataaaatctt tgcgaaccct ttcctttatc ttccgcgttt ttaataaagt tccaccagct      4320
     tataaaccaa tcactcaaga actagttcat gtgccagcga ccgagctcac tgacacgttt      4380
     tggcgaatag tagcacatgt tcaacactca gcatacagca aagaaatagg tttgttacgt      4440
     aaaaataaag ttttacagcc aagcatgcag gcactggcac cttttcttca tgaagtcaag      4500
     acaagaaatg caacactggt cgtggttcga gtcggcggaa gattggcaaa cgcacacatc      4560
     ccgtttgacg caaagcaccc accgattcta cctaaggatc acaaattcac aaaacttttc      4620
     gtagaatttc ttcacaggtc aaacttgcac gccggaccaa aggtgctgct atccttgcta      4680
     cgtgaaaaaa tgtgggtcgt caatgctcga gacctaacga ggaaggtggt acgcgcctgt      4740
     acacactgct ttcactaccg gccgcgtcta ttatctcaga tcatgggaaa cctcccatct      4800
     gaccgtctac ttggagagcg cccattcttt gtcaccggag tcgacttttg tgggcctttt      4860
     atgacgtcct acaaaataag aagcaaatca ccgtacaaga cctatgcgtc aatcttcgtc      4920
     tgctttacct ctaaagcaat ccacattgag cttgtggctg acttgacaac tat             4973
//
ID   BEL-64_DTa-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   23-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-64_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-262
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5679-5679 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identity to consensus.
XX
SQ   Sequence 262 BP; 87 A; 51 C; 47 G; 73 T; 4 other;
     tgttggggaa gatcagamtw aaktttaaat kttaacggaa tctgcagcca tctggtaaac        60
     gacaaaagcc caaacgcgtt cgcttaagtt tctcgtgtgt attactctct ctcccttcta       120
     cgattctact cgcaacgaat ctgaagggag atattattga agtcagcaaa taaacattat       180
     aacgtctaaa aaaccacgca attattacta tttgagctgg gcttgaaaga atataaattt       240
     aaagctgcgt atgaccgcaa ca                                                262
//
ID   BEL-650_AA-I repbase;    DNA;    INV; 6322 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-650_AA_;
KW   BEL-650_AA-LTR; Pao_Bel_Ele200; BEL-650_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6322
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5379-5936] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1188..6320
FT                 /product="BEL-650_AA-I_1p"
FT                 /translation="MLTSPHSAFVPAHMSTPQAQSTPPSVHTVSSRLSPIT
FT                 SSMIPTSAPIAASMSAASDVARRQLFGGPNSQQLAARHVVPRELPAFTGDP
FT                 VEWPLFLSCYQNTTDMCGYSDGENLMRLQRCLKGNALEAVRSHLMHPSSVP
FT                 MIIDTLKTLYGRPEQIINALLTKLRATPTPKPENLESLIGFGLACKNLCSH
FT                 LQAAGLQEHLSNPLLLQELVSKLPATLKLNWSLFKRQQANANLTTFGCYMD
FT                 QIVTAASEVTFINETDGHRSKQEKPKTKEKMFVNTHASEEKKASYSITDRK
FT                 ENKPKPCVACQKDGHKIKDCHVFQKMTLGDRWRLVQERYLCRRCLGSHGKF
FT                 PCKASFCGENGCEDRHHKLLHPGNPQLPRSSEPPRTTSTVTVHRQFKQPVL
FT                 FRILPVSLHWNGKTIRTFAFLDDGSSRTLVESRVAEELGVTGDVHPLCLQW
FT                 TSGIERMEDESQLIQLQISGAMNTTRFDLKEVHTVKSLNLPVQSLDFSELS
FT                 RQFPHLQGLPVQSYTGAVPTILIGLDNSFVMATRKSREGVKGSPIAAKTRL
FT                 GWAVYGSTSPDAERSVHPLFHISVRSPDQELHDLVKEFFAMESVGTISSTM
FT                 ESDEDRRARKILEATTVRTESGRFQTGLLWKYDDVEFPNSRPMAEKRFRCL
FT                 ERRLASKPEPYDNVKTQISQYQEKGYAHKASEEELASFDPKRTWFLPLNVV
FT                 TNPRKPNKVRLVWDAAAKVQGQSFNSALLAGPDFLAPLQAVLSSFRQFEVA
FT                 ISADICEMFHQILIRPEDRSAQLFPWRDEPSKPFEVFVMDVATFGSTCSPC
FT                 AAQFVKNRNAEEYSEQFPLAAEAIIKHHYVDDFLCSVHSEQEAVELAEQVK
FT                 LVHSKAGFVIRNWLSNSKSVLTRVGEQQAVPEKKTWTDRSVANERVLGMIW
FT                 KPEPDVFVFQGVFREEIQALLLDDTVPTKREVLRVVMSIFDPIGLVAVYVV
FT                 HGKVLVQHIWRSGIGWDERIPDGLLEQWKRWIKLLQQLDHVEIPRCYFPGY
FT                 SPEHYRAVELHIFVDASEEAFAAVAYFRIVEGSRVRCSLVSAKTKVAPLKL
FT                 LSIPRLELSAAVLGARLAKSVMENHTIPISHKVFWSDSCTFLSWLQADPRK
FT                 YRQFVAFRLAEIRELTRVNEWRWVPSRLNVADEATKWGKGPEITSDSRWLL
FT                 APKFLYQHPDLWPQQTIKEHESLEELRPIHLHCDIGKEQLLEFTRFSKWER
FT                 LIRAVAYASRFLNNLRCKIKKQPLNNTEWLSRDELLKAETFVCKQIQREAF
FT                 GDEFAILQGNKDRPVAEQMKLEKTSKIIKLSPFLDEQGVIRMDGRIAGAQQ
FT                 VSFDFKFPIILPKGHCGTKLIVDWYHRQYKHCNSETAVNEMRQRFHVSEMR
FT                 VAFKQAGKQCQWCKIYKAVPEIPRMAPLPQARMASHVRPFTYVGVDYFGPM
FT                 LVKQGRSEVKRWVALFTCLTIRAVHLEVVHNLTTESCKMAIRRFIARRGAP
FT                 REIFSDRGTNFVGANRDLKMELRQINTNLASTFTNTDTQWRFNPPSTPHMG
FT                 GSWERMVRSVKSALASLSTGGKPDDETLRTLLAEAESIVNSRPLTYLPIDS
FT                 EEQEALTPNCFLMLSTSGVNQPAREPIEERTMARCNWDLCSQLLDKFWTRW
FT                 IKEYLPTITKRTKWFKDCKPVQAGDLVVVVEDRLRNGWLRGRVLRVFPGSD
FT                 GRVRNAEVTTASAGVLVRSVAKLAVLEVGGTVEVNFDQYGSG"
XX
SQ   Sequence 6322 BP; 1622 A; 1658 C; 1663 G; 1379 T; 0 other;
     aactttatag atttctaacg agaaatctaa cggagatgcc gggttccgcg accattcctg        60
     gcagtgggat gccaatgcac caacagcatc cagaaggtac cgatctgcag agggaaagcg       120
     atcctaaccc caatgttgag gttatgactg tgcctgctgc atcgatcgac acccgttcca       180
     gaaggagccg atcatcaaga gctagctctc gcgcgttgcg tgcttccctc gatctgcagc       240
     ggctcgaaga ggaaaaacgt ctcgagaagg aattcatcgc caggaagtac gagatcctcc       300
     aggcccagct tgaagatgga gaaggtagcg gcagtagtgg cagaacacgt cgatcctccc       360
     atggcagttc acagagaacg cacgattggg tacagagcca attagtcccg attaccagta       420
     ccaccaccgg accaacaacg attcccgtgg ttactcaatc ccggacaggc actattccga       480
     aggatgtttc cccagtagtg gttccagtgt caagcagtgc catgatcatg gacgagtcga       540
     atgccatcga catgcgatct ttgtccatca acacgaccca gtggttccag cggtgccaca       600
     gatgcagcaa actgcaggct catcgtttgc tccgacacgt catcggcttg cacatctgca       660
     ggcaaggaac aacgagcaag cttcagcgat gaataccagc accgactgtg atggtgcagc       720
     aggtggcttc acaacaattt cgacggatca tcatgcactg ccgaccgcgg tgaatttctc       780
     tgtctcgcca acacgtacac cagaggcttt gatggagcag cttagcgagt tgcagaaaca       840
     tgcggacgat cttcaacgac agctgatgag taggacagac cgccaaactc aggattctgt       900
     tcggcatgca gatagtgctc ggcaatttca gccaacccag tcatcgacag tgagcggtat       960
     cgccgaatac atcatcaagc caccgaatgt gccaaggcca gcgcgcatcg ccgcttacga      1020
     atttccgatc agcgacggta atatctgcgt caccagttcg gtaagtcaaa cgtgctccaa      1080
     tactatttca acattcgctc cgcaattaaa tgctgtgagc tcgtcaattc cttatcgact      1140
     cgagctgttg atcgtataaa taaaacacct cctccggctg ccgggccatg cttacttccc      1200
     cccattctgc attcgttccg gcgcatatga gtactcctca agcccaatct actcccccct      1260
     ccgtgcacac agtctcgtct cgattgtctc caatcacttc gtcgatgatt cccacatctg      1320
     ctcccatcgc cgcttccatg tctgctgcca gtgatgttgc tcggcggcag ttatttggtg      1380
     gaccaaactc acaacaactc gctgccagac acgtcgtgcc cagagagctt cctgctttca      1440
     ccggtgatcc agtcgagtgg ccgttgttcc tgagctgcta ccaaaatacg accgacatgt      1500
     gtggctattc cgatggtgaa aatcttatgc gactgcagcg gtgcctaaaa ggaaacgcat      1560
     tggaggcagt acgaagtcat ctgatgcatc cttcgtctgt accgatgatc atcgacacgt      1620
     tgaagacgct gtacggacgc ccagagcaga ttatcaacgc tctcctcacc aaactacgtg      1680
     cgacaccaac gcccaaaccg gagaatttgg aaagcctgat cggattcggt ttggcgtgca      1740
     aaaatctgtg cagccatcta caagcagcgg gtcttcagga acacctttcg aaccccttgt      1800
     tgcttcagga gttggtgagt aagcttccag ccacgctcaa gctaaattgg tcacttttca      1860
     agcgccagca agccaacgcc aatctcacca cattcggttg ctacatggat cagattgtga      1920
     cggctgcaag tgaggtgacg tttatcaacg agacggatgg gcatcgtagc aagcaggaaa      1980
     aaccgaaaac gaaggagaag atgttcgtga atacgcacgc ttcagaagaa aagaaggcgt      2040
     cgtacagcat taccgatcgc aaggagaaca agccgaagcc ctgtgttgcc tgccagaagg      2100
     acggccacaa aatcaaggac tgccatgtct tccaaaagat gaccctcggt gatcgctgga      2160
     gactcgttca ggagcgttac ctgtgtcgtc ggtgcctggg ttctcacgga aagttccctt      2220
     gcaaagcgag cttctgtgga gagaacggct gtgaggatcg ccatcacaag ctccttcatc      2280
     caggaaatcc acagctaccc cgatctagtg aacctccaag aactacaagc acggtaacag      2340
     ttcatcgtca gttcaagcag cccgttcttt tccggatact tccggtgtcg ctacactgga      2400
     atggcaagac catccgcaca tttgccttcc tcgacgacgg ttcatctcga acactagtgg      2460
     aatcgagggt agctgaagaa cttggagtga ctggcgacgt tcatccactc tgtctacagt      2520
     ggactagtgg aattgaacga atggaagacg aatcgcagct gatacagttg cagatttcag      2580
     gagctatgaa caccacgagg ttcgatttga aggaagtgca caccgttaag agcctcaacc      2640
     tcccggtaca atcattggac ttcagcgagc tttccagaca gttcccgcac ctgcaaggct      2700
     taccagttca gagctacacc ggcgctgttc caacgattct gatcggcttg gataactcgt      2760
     tcgtgatggc tacacggaag agtagagaag gagtaaaagg tagcccaatc gcagccaaaa      2820
     ccaggctagg ctgggcggtc tacggaagca cgtcccccga tgctgaacgg tccgtgcatc      2880
     cgttgttcca catttctgtc cgttcgcccg atcaagaact ccacgacctt gttaaggagt      2940
     ttttcgctat ggaaagtgtt ggcacaatat catctacgat ggaaagcgac gaggatcgtc      3000
     gcgcaaggaa aattctcgaa gccactacag ttcgtacgga gtcaggcagg ttccaaacag      3060
     gattgttgtg gaagtacgac gacgtggaat tcccgaatag caggcccatg gcggaaaagc      3120
     gattccgctg tctcgagcgt cgtttagctt caaagcctga accgtacgac aacgtgaaga      3180
     cccagataag ccagtaccaa gaaaaggggt acgctcataa ggctagtgaa gaggaattag      3240
     ccagcttcga tcccaaacgg acctggtttc taccgttgaa cgtcgtaacc aacccaagga      3300
     agccgaacaa ggtgcgacta gtgtgggacg cagctgcaaa ggttcaaggc caatcgttca      3360
     actccgccct tctcgctgga ccagattttc tcgccccgct tcaagctgtt ttgtcttcat      3420
     ttcgtcagtt cgaggtggcc atcagtgccg atatctgcga gatgttccac cagatcctaa      3480
     tccggccgga agaccgatca gctcagctgt tcccgtggcg cgacgaacca tccaagccat      3540
     tcgaggtgtt cgtcatggac gtagcgacgt tcggttccac ctgttcaccc tgcgctgccc      3600
     aattcgtaaa aaaccggaac gccgaagagt attcggaaca gtttccactg gcggcagagg      3660
     caattataaa acatcactac gtggacgatt ttttgtgcag cgttcactcg gaacaggaag      3720
     cggttgaact tgcagagcag gtgaagcttg tgcactccaa agccggattc gtcattagga      3780
     attggctgtc gaactccaaa tccgttctaa cacgggtcgg ggagcagcaa gcagtgccgg      3840
     agaagaaaac gtggaccgac agatcggttg cgaacgagcg ggtcctcggt atgatctgga      3900
     agccggaacc ggatgtcttc gttttccaag gtgtgttcag ggaagaaatt caagcacttc      3960
     tgctggacga cactgttccg accaaaagag aagttctgcg agttgtcatg agcatcttcg      4020
     accccatcgg attagttgcg gtttacgttg tccacggaaa ggtgctcgtg cagcacatct      4080
     ggcgttcagg gattggctgg gacgagcgca tacctgacgg actattggag caatggaagc      4140
     gatggataaa acttttgcaa cagcttgatc acgttgaaat tccacggtgc tacttccctg      4200
     gctactctcc cgaacactac cgagccgtgg agctgcatat tttcgtggat gcatctgaag      4260
     aagccttcgc tgcagtagcg tactttcgca tcgtcgaagg atcccgagtt cgctgttctc      4320
     tggtgtcggc gaagacgaag gttgcgccat tgaagctact gtcaatcccg agactcgaac      4380
     tatcggcagc tgttcttggc gcaaggttgg cgaaatctgt aatggaaaat cacacgattc      4440
     ccatcagcca caaagtgttc tggagtgatt cttgcacctt tctctcctgg ttgcaagcgg      4500
     atccaagaaa atatcgacaa ttcgtggcat tccgactggc agaaatccga gagctaacgc      4560
     gagtcaacga atggcgctgg gttccctccc gtttgaacgt tgccgacgag gcgacaaagt      4620
     ggggcaaagg tcccgaaatc acctcagata gtcgctggtt gctagctccg aaattcctct      4680
     atcaacatcc ggacctgtgg ccgcagcaaa caataaaaga acatgagtcc ctggaggaac      4740
     ttcgtccgat tcatcttcac tgcgacatcg gcaaagaaca attgctagag ttcacgaggt      4800
     tttcgaaatg ggagcgcctg atccgtgctg tagcctacgc aagtaggttc ctgaacaatc      4860
     ttcgttgcaa gataaaaaag caaccactca acaacacgga gtggctgagc agagatgaat      4920
     tgctcaaagc ggaaacattc gtttgcaagc agattcagcg agaagcgttt ggtgatgagt      4980
     ttgccattct acaaggaaac aaagatcgtc ctgttgctga acaaatgaag ctagagaaga      5040
     ccagcaaaat catcaaatta tctcctttcc tggacgagca aggagttatc cgtatggacg      5100
     gaagaattgc gggcgctcag caggtctcat ttgactttaa gtttcctatc attctcccca      5160
     aaggacactg cggaacaaag ctaatcgtgg actggtacca tcggcaatac aagcactgca      5220
     actctgagac ggcggtcaac gagatgcgcc aaagattcca cgtgtcggag atgagagtcg      5280
     ccttcaaaca agccggaaaa caatgccagt ggtgcaagat ctacaaagcg gttccggaaa      5340
     tcccacggat ggctccacta cctcaagcaa ggatggcgtc acacgtccgg ccgttcactt      5400
     acgttggcgt tgactacttc gggccgatgt tggttaagca gggacgcagc gaggtgaaac      5460
     gttgggtcgc ccttttcacc tgtttgacca tacgtgcagt gcatctcgag gtggtccaca      5520
     acctgacaac agagtcctgc aagatggcga ttaggcgctt catcgcacgg aggggggccc      5580
     cgcgggaaat tttcagcgac cgagggacaa atttcgtggg tgctaaccgg gacctgaaga      5640
     tggagctaag gcaaattaac accaacctag caagcacttt caccaatacg gacacgcagt      5700
     ggcgcttcaa ccctccttcc acgccgcata tggggggatc ttgggagcgc atggtccggt      5760
     cggtcaaaag cgcgctggca tcactgtcaa cgggaggtaa gccggacgat gaaacgcttc      5820
     gtacgctact ggctgaggca gaatctatcg tcaactctag gccgcttaca tacttgccaa      5880
     tcgattctga ggagcaagaa gcactaacgc cgaactgctt cttgatgctg agcaccagcg      5940
     gagtcaatca gccggctagg gagccgatcg aagagaggac gatggcacgc tgcaactggg      6000
     acctctgcag ccaactgttg gataagttct ggacacgttg gatcaaagag tatctgccta      6060
     cgatcactaa gcgtacgaag tggttcaagg actgcaagcc tgttcaagct ggagatctgg      6120
     tggttgttgt ggaggaccgg ctccggaatg gctggctgag aggtcgggta ctacgcgtgt      6180
     ttccgggaag cgacggccgt gtgcggaatg cggaagttac gacagccagt gcaggagtgc      6240
     tggttcggtc agtggcaaag ctggcagttc tggaagtcgg tggtactgtt gaagtaaact      6300
     tcgatcaata cgggtcgggg ga                                               6322
//
ID   BEL-650_AA-LTR repbase;    DNA;    INV; 448 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-650_AA_;
KW   Pao_Bel_Ele200; BEL-650_AA-I; BEL-650_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-448
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 448 BP; 166 A; 89 C; 86 G; 107 T; 0 other;
     tgttccgaac gacgataaac cagcacccag atgcgatagg gtcacccgtt cagcgcacag        60
     caagaggcca cagtagaggc aagatacaat catgcggatg tattgccttc tgctggagct       120
     gtcacgctgg atgattgtat tgaacttagt aactatagac acacacaaaa cagattaaaa       180
     tctactaaag ctaggaagtg aaactgaatt gaattaaaac tatttgctta aattatcagc       240
     taaaattttg cttatcatag ttaaagttgt tggacagtgg aaaaacacat ctaggactag       300
     aaatgtgagt agcaagacat aacacaaaca tgaatttata aactaattaa cgaaataata       360
     aaattacagc tataaagctg actcatgcac catgcaaaca cgagtcgtgc tataagaggt       420
     ccgaacacct atcgctgctg tcccaaca                                          448
//
ID   BEL-651_AA-I repbase;    DNA;    INV; 6528 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-651_AA_;
KW   BEL-651_AA-LTR; Pao_Bel_Ele228; BEL-651_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6528
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5558-6118] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..1822
FT                 /product="BEL-651_AA-I_2p"
FT                 /translation="MNPASHCMLCDRPDNADDLVQCDKCDGYVHFACAEVG
FT                 DSIADEDRSFTCQRCIERLEAITVSSQRSSKRTSTSTRSSLSAARLTLRLQ
FT                 QLETERQNRLKELEDAERFQRLRRQVEADFEKQKLEALESQLLDEEENRST
FT                 RSRVSARVIHANTHKWIGSTSQSDDVVGRPSNRTEEANEPQIFESTCNVEI
FT                 QSGNPEIPATSTSRPALKNIGVPKQKTSVPVSLAGVGSVSDPNSRTRDMST
FT                 YEFHIDTSRGAGQSTSNQVRDSVSVSNVRLESIAESVQTSTPKPPTDNVSI
FT                 PKVQIASKLRDKSLTVSSQIAQQRLPCKGSTTGEPPPKASVSQPISELDPM
FT                 QYHKSGVPGKRLGPKVGQQLSEIKLSERLPPTQVPSTSTSQSHQQQCAEPV
FT                 LSSTGHTATRSSNEFPSTQRSFQQYSQWNQSALLPPPGYNKLGSKPVIHYQ
FT                 QQWPSGMAQWSQPQQPHPLNSTEFHQNQVPISSAPLQPLGQHPIPSSSLTE
FT                 AVPVQISPSSNRRTAPTAEQLAARQVIPRELPTFSGDPQDWPLFFSSFNNS
FT                 TEACGYNDSENLARLQRCLRGHALESVRSRLLIPESVPHVTNIR"
FT   CDS           2203..3252
FT                 /product="BEL-651_AA-I_1p"
FT                 /translation="MSKEKLFVHQQTPSTSGSKHISSTRQKEPAEVVLKPC
FT                 TYCNKTDHRIAECQEFKQLDLDGRWKVMRRKGLCRICLIPHRTWPCRSKQE
FT                 CGVGDCRMRHHPLLHSRKAELSASQSPSSAVRNVTYQHHHATTSYALLRYL
FT                 PVTLYGNGKSIELFAFLDDGSSSTMLEAEVANLLGIEGPNEPLALGWTGDV
FT                 TRIEKESQRIEVTIAGGNNGKCFLLKAKTVGPLKLPSQTVDYEELCETHPQ
FT                 LRHLPLKSYTSVSPRLIIGVDNARLISSLKNRESAAGDLIATKTRLGWSIY
FT                 GTHLVNKTSVGYVNTHVKLSQEDTDFTDLFRQFLAVEEATIKQNPQSEEDK
FT                 RALEILQ"
FT   CDS           5138..6172
FT                 /product="BEL-651_AA-I_3p"
FT                 /translation="MHEYPDDYATLVYDRDDPDREQKLIVKSSPLYKMSPK
FT                 IDEDGVIRMDSRIIAAPRITLDMKYPILLPRNNQVTKLLVESYHERFLHQN
FT                 NETVCNELRQRFRIPRLRTVISKIARQCQHCRIGKAAPQVPIMAALPEFRL
FT                 TGFVRPFTHTGIDYFGPVYVKQGRSQVKRWIALFTCLSVRAVHLEVVHCLS
FT                 TQSCVMAIRRFVARRGSPITFCSDNGTNFVGANNLLKEQLQKISKDCAQSF
FT                 TNSQTKWLFNPPLAPHMGGSWERMVRSVKVAMAAIAHHPRHPSDEVLETII
FT                 VEAESIVNSRPLTYIPLDSVNQEALSPNHFLLYGTQGINQPSQELTVDHST
FT                 LS"
XX
SQ   Sequence 6528 BP; 1899 A; 1510 C; 1648 G; 1460 T; 11 other;
     atcttcaaga ttttgtggtt agatcctgcg tgcggcgagt atacagataa tgaatccagc        60
     aagtcattgt atgctgtgcg atcgcccgga caatgccgac gatttagttc aatgcgataa       120
     atgtgatggc tatgtacatt tcgcatgtgc agaagtagga gactcgattg ccgacgagga       180
     tcggagtttc acctgtcaga ggtgcatcga gagattagaa gctatcacag tttcatcaca       240
     acgttccagt aagcgaacaa gtacgtctac gcgcagtagc ctgagtgcgg cccggctaac       300
     attacgtctc caacagttgg aaaccgaacg acagaatcgg ctgaaggaat tggaggatgc       360
     tgaaaggttt cagcgactac gaagacaggt agaagctgat tttgaaaagc agaagctcga       420
     agccctcgag tctcagctgc tagatgagga ggagaatcga agtactagaa gcagagtaag       480
     cgccagagtg attcacgcaa acacacataa gtggattggt tcgacaagcc agagtgacga       540
     tgttgttggt agaccctcga atcggacgga ggaagcgaat gagccacaaa tcttcgagtc       600
     gacatgcaac gtagagattc aaagcggtaa tcccgagatt ccagccacgt cgacgtcaag       660
     accggcgttg aagaacatag gtgtcccaaa gcagaagacg agtgtaccgg ttagtttggc       720
     cggwgtggga tcagtgtccg atccgaactc gcgtaccaga gatatgtcca cttatgagtt       780
     ccatatcgat acatcccgtg gtgcaggcca gtctactagc aaccaggtga gagatagtgt       840
     tagcgtttcc aatgtaagac tagaatctat tgctgaatct gtccaaacaa gcacacccaa       900
     gccaccaacc gataatgtaa gcattcctaa agttcaaata gcatctaaac ttagggataa       960
     aagtctaaca gtatcaagtc agatagccca acaaagatta ccatgtaaag ggtcaactac      1020
     aggggaacct cctccaaaag caagtgtttc acaaccgatt agcgagttag atccaatgca      1080
     atatcacaag tcgggtgtac cggggaaaag gctggggccc aaagttggtc agcaactatc      1140
     cgaaattaag ttgtctgaac gtttgcctcc aacacaagta ccatctacaa gtacatcaca      1200
     atcccatcaa caacagtgtg ccgagccagt tttgtcatcg acggggcata cggcaactag      1260
     aagttcgaac gagtttccat cgacacaacg aagtttccag cagtattcgc agtggaatca      1320
     gtcagcattg ctaccacctc ctggatataa caagttaggg tcaaaaccag tgatccatta      1380
     tcagcaacag tggccttcag gaatggcgca gtggagccaa ccgcagcagc cacacccttt      1440
     gaacagtacc gaatttcacc agaatcaagt cccaatttcg tcagcgccgt tacaaccact      1500
     agggcagcat ccgatcccat cttcgagttt aacggaggca gtaccagttc aaatttctcc      1560
     ttcgtcaaac agacgaactg caccaactgc tgaacaatta gctgcgcgtc aagtcattcc      1620
     gagggagttg cctacgtttt caggtgaccc acaggattgg ccactattct tcagctcgtt      1680
     taataattcg accgaagcgt gtgggtataa tgattctgag aatctcgcaa gactccagag      1740
     atgtctccgt ggccatgcac tagaaagtgt tcgcagtcgt ttgctgattc ctgagtctgt      1800
     tccccacgtg acgaacatac gctagcccgg ctctatggca ggcccgaagt tataattcat      1860
     tcactgttga agcgggtgcg tgaaattccc tcccctaaag gtgatgatct caaaaccttg      1920
     atcaaatttg gaatgggagt agggaacctg gttgaacaca tgattctagc cgatcaacgg      1980
     cagcatatca gtaaccctat gctgttgcag gagatggtgg acagactacc acctaacttg      2040
     aaactacagt gggcgtccca caaamggatg tatcagackg ttgatttkgg agmatttaat      2100
     ggttkcgtga tggacctggc gacgatggca agtgacgtta ccctacacat ggatcmagcg      2160
     cagtcgagtt ccagcaggtt ggagaagccg aaaaaggaca aaatgtcaaa agagaagctg      2220
     ttcgtgcatc aacaaactcc atcgacatct ggatcaaaac acatcagctc tacacgccaa      2280
     aaggaaccag ctgaagtagt tctcaagcct tgtacatact gcaacaaaac cgatcatcgc      2340
     attgcagaat gtcaagagtt caaacagcta gatctcgatg gacgctggaa agttatgagg      2400
     cgaaaaggac tttgccgaat ctgtttgatc cctcatcgca cgtggccgtg tcgctcgaaa      2460
     caggaatgtg gagtcggaga ttgtcgaatg cgtcatcacc ctttgctgca ctctagaaag      2520
     gctgagctca gcgcgtctca gtcgccttct tcggccgtca gaaatgtgac ctaccagcat      2580
     catcacgcca ctacatcgta tgccttactt cgctaccttc ccgtgacgct atatggaaat      2640
     ggcaaaagca ttgaattgtt tgcctttcta gacgacggct cgtcgtcgac tatgctggag      2700
     gcggaagtgg caaatcttct tggaattgaa ggacctaatg aacctctggc tttaggatgg      2760
     acaggagatg tcacaaggat cgaaaaggaa tcgcaacgca ttgaagtcac tatagccggg      2820
     ggaaataatg ggaaatgttt cctattaaaa gccaaaacag taggccccct caaacttcca      2880
     tctcagacag tggactacga agagctgtgt gaaacacatc cgcaactaag gcatctcccc      2940
     ctgaagagtt ataccagcgt ctctcctcgg ctcataattg gcgtagacaa cgctcgactg      3000
     ataagctcgc ttaaaaatcg tgaaagtgct gcaggagatc tcatcgcaac aaaaacccgg      3060
     ctgggatgga gtatttacgg cactcatctg gtaaataaga catctgtcgg atacgtgaac      3120
     acacacgtga agctaagcca agaagacaca gatttcaccg atctgttcag acagtttttg      3180
     gcggtagaag aggctacaat aaagcagaat ccacaatcgg aggaagacaa gcgggctttg      3240
     gaaatattgc aggamacaac acgaagagtc ggaggaaggt ttgaagtagg tttgctgtgg      3300
     aaatacgatg atccatgtct gcctgacagt tttcctatgg cggttcgtcg tatggaagca      3360
     ttagagaaaa aattggagaa agatccttat ctggacggaa aggtgagaga acaaatatca      3420
     gagtacgtcg aaaaaggata tgcgcatcga atcactgcag cggaattaga gtccacggag      3480
     tcagggcgcg tatggtatct acccctaggg gtagtacgca acccgcggaa gccggaaaag      3540
     gtccgattga tttgggacgc tgcagcacga gtagagggcg tgtcgttcaa tgataggatg      3600
     ctgaaaggac cggaccttct gacagcacta ccaaccgtgc tgctacgctt ccgtcaaaaa      3660
     tcaattgcct tcagtggaga tattagggaa atgttccacc aattccttat tcgtcagaga      3720
     gatcaacaag cgcagaggtt cgtgtttcga gaacgcscag gacaagcgcc gcagattttt      3780
     gtgatggatg tcgctacatt cggcgctgcc tgctctccat gtatcgcgca gtatctaaaa      3840
     aaccggaatg cggaggagca cgcagaacag ttccccgacg cggcgaaggc aatcatcgag      3900
     aaccattatg tagacgacta cctcgacagc gtagacacgg tagaggaagc agttcaacta      3960
     atacaggagg tgaagcacgt tcatctttgg ctggaatgga aatccgcaac ttttcgtcsa      4020
     actccgccaa agtgcttgaa cgcgtagaga ggtgaatggg aatcgtcata gcctaagtcc      4080
     gatgcaatcg tagagcgagt gctcggtatg gtgtggaggc catctgaaga cgttttcagc      4140
     ttcgaactaa tttaaaagag gagattcgga acatcatgaa aggcatgaag caccaaccaa      4200
     acgtcaagtc cttcgtacaa ttatgtcact gttcgacccg ttaggactgg tagcgcactt      4260
     cacctcacgg aaagatcacc atgcagcagg tttggagaac cggagcaggt tgggacgatg      4320
     ccatttccgg taaaattctg gaagataaga gtggagcgtc aagatagaga tgctcgaatt      4380
     ctaaggtgct tcttcgcaga cacgggagct catccgaaag atgcagagat ccacgtttcg      4440
     agaatgcata tgcttgcgag actgcgttca ggagctccgc agtgcacatt gatagcggca      4500
     aacacgaaag tggcaccgtt gaagccactc tcaataccac ggctagaata ataagcagct      4560
     cgagttggtg accgtcttct ggatagaatc tgcaaagcgc tgacaatacc tgttgtcgct      4620
     cgataccttt ggtcggactc gacgaccgca cttgcctggc tcagatccga aactcgacga      4680
     taccaccaat ttgtcggctt tagagtggga gaaaattttt tgagcacaac cactatcaac      4740
     gaatggcgca aagttccttc caagataaat gtcgcctgat cacttgatcg cttgatttgg      4800
     tagctctacc aaatggagag atggacccag tttcgacccc gaagactggt ggtacgcagg      4860
     accgacgttt ctaagggatc cggatgacag ttggctgaag caaaccgatc atatgtttga      4920
     gacgtcggag gatttgcgaa acgtcttcct acacatccat cggactttac cagcaccgct      4980
     gattgacctc agccgcttct ccaaatggtc gaggctcaac agggccgcgg gatacgttgt      5040
     gcgggcagta aagctattcc tcggttggaa agcagaaggt ccattaacgc atgaagaatt      5100
     gcagaaggca gaatctctga tctggcktca agcgcagatg cacgagtatc cggatgatta      5160
     cgcaacgctc gtctacgaca gagatgatcc ggatagggaa cagaaactga ttgttaaatc      5220
     aagcccttta tacaagatgt caccgaaaat tgatgaagat ggagtaataa ggatggatag      5280
     tcgaatcatc gcagcaccaa ggattactct ggacatgaaa tatcctatct tactgccaag      5340
     aaacaatcag gtcacgaaat tactggtgga gagctaccat gaacgttttt tgcatcagaa      5400
     taatgaaacc gtttgtaacg agcttcggca acgttttcga attcctcggc ttcgcacagt      5460
     aatctcgaaa atagccaggc agtgtcaaca ctgtcgaata ggaaaggcag caccacaagt      5520
     ccccatcatg gcagcacttc ctgaatttcg tctaaccgga tttgtacgac cgtttacgca      5580
     cactgggata gactattttg gtccagtgta cgtgaaacag ggacgcagtc aagtcaaacg      5640
     ctggatagca ctgttcacgt gtctgtcagt aagggcagta catctagaag ttgtacattg      5700
     tttgtcaaca caatcatgtg tcatggccat acggcgcttc gtggctcgaa gaggttcacc      5760
     aataacgttt tgctcagaca atggaaccaa ttttgtcgga gctaacaatc tgttgaaaga      5820
     gcagctccag aagatctcca aggactgcgc tcagagcttc acgaattcac aaacgaaatg      5880
     gctgtttaac ccacccttgg cgccccacat gggaggttca tgggagcgca tggtccgttc      5940
     ggtgaaggtt gcgatggcag caatcgcaca tcatccaaga catccaagtg acgaggttct      6000
     cgaaaccata attgttgagg ccgaatcaat agtcaactca agaccgctaa cgtacattcc      6060
     cctggatagt gtgaaccagg aagcactttc gccgaaccat ttcctacttt atggtaccca      6120
     gggaatcaac caacctagtc aagagttgac cgtagatcac agcacattaa gcttaaggga      6180
     tagctggaaa ttggcccagt atctggtaga tacattctgg cgacgctggg taaatgaata      6240
     tttgcccacc ctgacaagac gcacgaagtg gtttcaaccg gtaaaaccaa tgatgccggg      6300
     tgatttggtg gtggtagttg aggaaacgac tcgcaatggt tggttgcgag gacgaatcgt      6360
     ggaagttgtg aaaggtaagg acggtcaagt ccgcagagct gtagtgaaga cgtcgagggg      6420
     aatactcagc aggccagcga ccaagctagc aatcctagat gttcgaggta ctacaggggc      6480
     tccagaaaat gaaaattcaa gcgaaccgga actacacggg agggggga                   6528
//
ID   BEL-651_AA-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-651_AA_;
KW   Pao_Bel_Ele228; BEL-651_AA-I; BEL-651_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-502
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 502 BP; 197 A; 81 C; 103 G; 121 T; 0 other;
     tgttcgcgaa ccaactggga accctgcgca tactaggtga gtcccggttt cgccctttcg        60
     caatgtacga aaatcacgtt gacagggcgt acattgtcaa cgggtggaaa ataaataaaa       120
     ctaagaaact aaaaggtaga agtaaaacga gaaaagaaat taaaaagcca ggtgttcaga       180
     aagtagcgga aaactaaaat aaactgtgaa ttatttgatt taaatagcgt aacggaaggt       240
     aaagaagtga aataataaaa agtgaattat acttataatt atctggtcta acaggaatta       300
     ggttgctggg agaatttgag aattctagtt ggaaggagtt agccagcgag gtacaccaaa       360
     atgtaagacc cattattaat aatctaacaa atgaaacaaa aattattaaa atcaaaaata       420
     aatttcagct tgaagctgcg tttaccgttg ctgaaaagag gtgttaatcc atcgccagaa       480
     tcccgaaatt ctccccccaa ca                                                502
//
ID   BEL-652_AA-I repbase;    DNA;    INV; 9262 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-652_;
KW   BEL-652_AA-I; BEL-652_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9262
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9262
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 93-93 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1372..9018
FT                 /product="BEL-652_AA-I_1p"
FT                 /note="PHD finger, DUF1759, reverse transcriptase,
FT                 and ribonuclease H."
FT                 /translation="MSNPFVINKNGNCRLCQNSDDEEEYMVACCECDRWFH
FT                 PSCAKLTRKPTQDERFLCIKCSVIDKELLRLNKVASAIASNPSEAFFEKVI
FT                 NNQQKAMTDITQVLSRIGIKNESGDAEEWTIYLKRQALMRLPKFGGSAKEW
FT                 PNFQRAFQQTTQEGAFNNLENLNRLQQVLYGVAAKSVQQLMMDPDNVPDIM
FT                 LRLEEHFGRPDQIYKELLADLLKIRRDSRTVVIEMANALENLVNNIKLIRK
FT                 EEYLADHRLVEDLVKRLPYNIQVKRTEYYLNAQNQLAVQTLDDLEDWLKPF
FT                 ARTARVMMLDNSHNSQQRGAVNHHDQNTKKNKTKNVCLCCKRLHPHKIWDC
FT                 YTFKRMNAEDRIKVAQRGRLCFGCLQSSNHDLLNCQRNRSCNINGCQRKHH
FT                 PMLHTNPVGSQPVQTVNKHAEGNSRPSIYYQILPVTLRNKDKSVETYAFLD
FT                 PGSSLTLMEADVAQQLNLKGVTTPLQLAWTQNFTTDHDLSQSVQFYIRGAT
FT                 KKSYFLKDVRTIKNLGLPCQSRNYEDLYEQYPHLKGLPLQSFDKIRPTIML
FT                 GLKHSFLLIGHEHRWGNRDEPIAMRTKLGWLIYGGLTTNDEKNYTMMNHED
FT                 DTLRNMLNGYFSIEDFGVKNVKELPKSEDEKRANEIIQRTLRYKDGRYEIG
FT                 LLWKQDNHEFPFSSDVALKRLVGLENKLRQDPGLEKWAKDTIREYVAKGYA
FT                 RKLEPVEMINKVKHEYFLPHFIIINKNKEPPKPRLVFDAASKIHGHSFNSA
FT                 LLSGPDSTTSLFGILIRFREGKYAICGDIKEMFHQVRIRNEDQNAQRFLWR
FT                 DCEQHRFPDMYVMQVMTFGSTCSPSCAQAVKNHNATRLKDKYPLALTPIIN
FT                 QHYVDDYEDSFNSLEDAIQTVDQVIKAHDEGGFFITKFCSNDKRLLETIPT
FT                 ERRDTESMKYLENKENVSEKILGVYWNTNKDSIGFQVKPERLPREVYCKIR
FT                 RPTKREVLSFVMSVFDPLGLISNITIHGKILIQDLHKETSEWDKEISEKQQ
FT                 PAWENWLEQVEASKYVRIPRWLLENTGNQVELHTFVDASEKAFAAVVYCRS
FT                 NTGGTPTIRLVAAKSRVAPIKALSIPRLELQAALLGVRLTDTIKHETRFKV
FT                 TKSIFWSDSKTVLAWINSEHRKYKPFVAHRIGEILDSTTMDQWRWVPSADN
FT                 PADEGTKPANKKSIWTSGPSFLKLPSKDWPQTETTETNEEERFVGAHEEKD
FT                 DCIQEGKFSCWWKLLFRICMILKIIQFGTKRNTFSRAFTMEDRTRAENILY
FT                 KKAQRDIYPDELKDLSKNNQLTTIGPLNKFNPALDENGIIRSYSRLEYAEN
FT                 IPKAASIPIILPKGHHITNLIVKWYHEMFKHHADKAVLAALQQKYFINGIN
FT                 TTLQYIKARCQHCLNAKAKPRAPIMAALPSCRTDSFIYPFTHTGVDYFGPF
FT                 EISVNRSREKRWGVIFTCMSTRAVHMELAAKLDTDSFLLCFMNFQNRRGKV
FT                 SHLYSDNGTNFVGAERELRELLEEVNKRMLNGQAIKLELSWHFNPPRAPHF
FT                 GGAWERLIRIIKDNLKEMIGSRKERSPPTAEVLRGALIQTEYFLNSRPLTN
FT                 IPLNSEDDEVITPFHILIGRSGSFALPFSFKTNDLERKHWRLAIHYGKYFW
FT                 RRWHNEYLPLIAQRPKWNKKVEPIRVNDIVVIADNDVERGQWLKGRVIEIT
FT                 EARDKQVRSVKVKTANGIYHRAATSVAVLDVYNHDSAADEATKAAKEVSST
FT                 TAQKITTKQAFDESAVAEQAFDESAVAEQAINESVVAEQTFNETAVEAAVH
FT                 TTMAEFGTSTAEATGAVINPCKQLPAVTDETITMDTNESEDVIKQGKNKEN
FT                 VKPSSTKTSQTIVPTTTKHRKRGQKRVAPCTWAYCGLTATTKYMKVTVDKS
FT                 MKKSLTELNKTSKGPRVINITPWTITVMMLILCIGQVLGSELKGLIAYDCA
FT                 SNDINITSYSLVDVASCEPPARNLTTKETRIQVLQRSPKILVHVHQCKVII
FT                 KRSIRHCGAFSHTSDYEYGYAYIVKEFTPDECRLAQLRGSITLTDNYKIQE
FT                 LRRNSTTRGESLIVGSLKGTSCNGGVYRTPEYTWEGALVFYEYEISMHDYV
FT                 ATADIENDQVTLRNGIICSYSTGWCLDAEFGYITWEIDLKRQCEEIEFEVI
FT                 YEGNVNKTFDNDRKSKAVYTLLSDTHMFSIRAKDRTQICGFDGYITDHPRI
FT                 SILEANVFKSPFRRKASNGRNLDLFTYFNSKITLVENYLGEKLNEVYTNVM
FT                 TEMCKIDKSLMETKLTLARVNPSEFVSNIVKRSGFTAIVAAEVLYILECKP
FT                 VFVTYESKEDCYQEIPVKYNNNSMFMAPVTRILQLRGTEIDCTPLLPAKFT
FT                 IGGRWYTTDQRLRESNPPRKLTTDVITSWSYTSLPSLMQSGVYDADSLEKM
FT                 KSMVYEQGDKKIASSVLHKMITGKHPDLQGFSFEALISEKIIDNVLHKYWT
FT                 KLISWSTWLGNVTSTAIGIYMIGRIIKFLIDTLIHGRILYDIYGLGWQLLA
FT                 SFWDSLTNFLSHRNVMKQRQETGDIEEDIQLTTTATTAKAFAQPPAGNTHH
FT                 QVGVCIYPRLDNK"
XX
SQ   Sequence 9262 BP; 3444 A; 1777 C; 1885 G; 2156 T; 0 other;
     tggtggctcc agagaggaat gtcatacggt tttttcgcga acacgtgtga tatcttaaat        60
     acgtaccaca aaggcgttgc tgttgccgaa aacagcaaag tgaatcaaag tgaatcaaaa       120
     gtttaggttc aacaagtgaa acgcataaac tgtgttaaaa agtggctaag taaagcatcg       180
     agaaaattca agaactatat acataaagta aacaatgaat gatataagcc aagaaatcga       240
     tgaattggtc gagtacttcc gtgaaataga taggaagttc gaactagtaa aacaatctga       300
     agagtacaaa caatggcata gagagccaat cgctagagga aaattaagcg aaacaaaaga       360
     atttgaaatc attttgtggg aggatacccc acgggaaaag ttatttgtac aacggatttc       420
     aaaaattcag aaaaatatgg taagaccgaa gatgccataa gcgaaagtgt cataccagtt       480
     cttaaaaaaa aatacaatat acgtcgatta tacacgaaga acaattctac aaaggtttag       540
     aagtaaatta ctgcaaaaag gacaataagg tgaagaaagt gaaccatcag ttagaacagc       600
     tgaaccagcg gaccggagat tcatggacag cattgttgaa gaggtaattc aaattcttca       660
     acaacaaggt gagtcaaaca attttcttta cttcctttaa cacactttat tgatgacaag       720
     tttttgataa aatatcaagt gtctaacaaa attattgctg aattcttgtt ctgtgtaatc       780
     tttataacga cgtgactcgt gaattcattt ttggctatct gataaactcg gtacatacaa       840
     tcggagggtc aataataata ataaaaaatt tcctcaaggg aggacaagca cgatctcagg       900
     agagacgtgc gaatctgccg tcaaaggcat tacaagtgat caagagatca caaattcctc       960
     aaaggaggac cggtacgatc tcaggagaga cgtatcaaac tgccaacaag gcagtaatag      1020
     tgaccaaaca acggatcaca aaaaaaattc ctcaaagaag gaccactacg atctcagaag      1080
     agacgtatca aactgccaac aaggcagtaa tagtgaccaa acagcggatc acagatattc      1140
     ctcaagggag gaccgtacga tctcagaaga gacgtactaa taagccgtta aaggcatcaa      1200
     cagtgatcaa gggatcacca aattcctcaa aggaggacca gtacgatctc aggagagacg      1260
     tacaacctgc caaggaaggc agcaaagtga tcaagggatc acgtcacctc atcaaagggg      1320
     tatacattcg acttagaaaa acgtataaac ccaagtaggg ataacaccga catgtcgaac      1380
     ccattcgtaa ttaacaaaaa cggcaactgt cgcttatgtc aaaatagcga tgacgaagag      1440
     gaatacatgg tcgcatgttg tgaatgcgac agatggttcc atccatcatg cgccaagcta      1500
     acacgtaaac ctacccaaga tgaaaggttt ctatgtatca agtgtagtgt catagataag      1560
     gaattgcttc gtctaaataa agtggcatca gctatagcaa gcaatccatc agaagcattc      1620
     ttcgagaaag ttataaataa ccaacaaaaa gctatgaccg atattacaca agtactatcc      1680
     aggattggaa taaaaaatga gtccggagat gcagaagaat ggaccattta tttaaaacgc      1740
     caggcattaa tgcgtttacc caaattcggc ggatcagcca aggaatggcc gaattttcaa      1800
     agagctttcc aacaaacaac gcaggaagga gcgttcaaca atttggaaaa tttaaacaga      1860
     cttcaacaag tactgtatgg agtagctgct aagagcgtgc agcaattaat gatggatccg      1920
     gataatgttc cagacataat gctccgcctt gaggaacact ttggtagacc ggatcaaata      1980
     tataaggagc tattagccga cctactcaaa ataagaaggg attctagaac agtggtaatc      2040
     gaaatggcaa atgctctaga aaaccttgtt aataacatta aattaatcag gaaagaggaa      2100
     tatttagccg atcacaggtt agtggaagat ttggttaaaa gacttcctta caatattcag      2160
     gtaaaacgaa ctgagtatta cctaaacgcg cagaatcaac tcgcggttca gacattagat      2220
     gatctagaag actggttgaa gccatttgct agaactgcaa gagttatgat gttagacaat      2280
     tctcataact ctcaacaaag aggtgcggtt aatcaccacg atcaaaatac aaagaaaaat      2340
     aagacaaaaa acgtttgcct gtgttgtaaa cgattacacc ctcataaaat atgggactgt      2400
     tataccttca agagaatgaa tgcagaagat agaattaaag tggcacaaag gggacgttta      2460
     tgttttggat gcctgcaatc atccaaccac gacctactga attgtcaacg gaataggtca      2520
     tgcaatatta acggatgcca aaggaagcat catccaatgc ttcacactaa tccagtaggg      2580
     agtcaaccag tgcaaacagt gaacaaacat gcggagggaa acagtcgtcc ttccatttac      2640
     taccaaatat taccggttac tctacgtaac aaggataaat ccgttgaaac ctatgcattt      2700
     ttagatccag gttcatcatt aacactaatg gaagcggacg tagctcaaca attgaatcta      2760
     aagggagtta ctacacctct tcaattagca tggactcaga attttacaac tgatcatgac      2820
     ttaagtcaaa gtgttcaatt ttatataaga ggggctacaa aaaagagcta cttcttaaaa      2880
     gatgttagaa caataaaaaa tcttgggtta ccttgtcagt ctaggaatta cgaagattta      2940
     tatgagcagt accctcactt gaagggattg ccattacaaa gttttgataa aatcagacca      3000
     acaattatgc ttggactaaa acacagtttt ctgcttatag gtcacgaaca tcgttgggga      3060
     aatcgagatg agccgatagc gatgcgaacc aaattaggtt ggttgatata cggagggttg      3120
     acaactaacg acgagaaaaa ctatacaatg atgaaccacg aagacgatac acttcgtaac      3180
     atgttaaatg gatatttttc cattgaggat tttggagtca agaacgtaaa ggagctcccc      3240
     aagtccgagg acgaaaaaag ggccaatgag attattcaaa ggaccttacg atacaaagac      3300
     ggaagatatg agatcggatt attatggaag caagataatc acgagtttcc gtttagcagc      3360
     gacgttgctt taaaaagact cgtaggattg gaaaacaaac tgcgacaaga tccaggcctc      3420
     gaaaaatggg caaaggatac aataagagaa tacgtggcta aaggatatgc tagaaaatta      3480
     gaaccagttg aaatgataaa caaggtaaag cacgagtatt ttttacctca cttcataatt      3540
     atcaacaaaa ataaagaacc acccaaaccg aggttggtct ttgacgcagc atccaaaata      3600
     cacgggcatt cgttcaactc tgcgttatta tctggaccgg acagcacaac atcgttattc      3660
     ggaatcctta ttagatttcg tgaaggaaaa tacgcgattt gcggggacat caaggaaatg      3720
     ttccatcagg tccgaatccg aaatgaagac caaaacgctc aaagattttt atggcgggac      3780
     tgcgagcaac atcgattccc agatatgtat gttatgcaag tgatgacttt tggatctacg      3840
     tgctccccgt catgcgctca agcggtaaaa aatcataatg ctacgcgttt gaaagataaa      3900
     tacccattag cattaacacc gataattaat caacattatg tcgacgatta tgaggacagc      3960
     ttcaattcgt tagaagacgc tattcaaacc gttgatcagg ttattaaggc gcacgatgaa      4020
     ggaggctttt ttatcacgaa attctgctca aatgataaac gtcttctaga aacaatacca      4080
     acggaaagaa gagatacaga atcaatgaag tatctcgaaa ataaggaaaa cgtgtctgaa      4140
     aaaattcttg gtgtctattg gaacactaat aaagatagca ttggatttca agtaaaacca      4200
     gagagattac ctcgagaggt ttactgtaaa ataagacgcc caacgaaaag agaagtcctt      4260
     tcattcgtaa tgagtgtgtt tgacccactg ggtctaatat ctaacatcac gattcatggg      4320
     aaaatactta tacaagacct tcataaggag acatcagagt gggacaagga aatatcagaa      4380
     aaacaacagc cagcatggga aaactggcta gaacaagtag aagcatcaaa gtacgtcaga      4440
     attccaagat ggctacttga aaatacagga aaccaagtgg aactgcatac tttcgtcgat      4500
     gcttcagaaa aagcattcgc tgcagttgtt tactgtagaa gcaatactgg aggaacacca      4560
     actatcagat tggttgccgc aaagtcaaga gtcgcgccca taaaggctct atccattcca      4620
     cgattggaac tacaagcagc actactagga gtacgactaa cagacacgat caaacatgag      4680
     acgcgtttca aggttaccaa atccatattt tggtcggatt cgaaaaccgt gctagcctgg      4740
     ataaactcag agcacaggaa atataaacca ttcgtagccc atcgaattgg cgaaatactt      4800
     gattctacca ctatggatca atggagatgg gtacctagtg ctgataatcc cgcagacgaa      4860
     ggaacaaaac cagcgaataa aaagtccata tggacttcag gcccgagttt cctgaaacta      4920
     cctagtaagg attggcctca aaccgaaacc acggaaacta acgaagaaga gagattcgtt      4980
     ggagcacacg aagaaaaaga tgattgtatt caggaaggaa agttttcatg ctggtggaaa      5040
     ttactatttc gcatctgcat gatattaaaa attatccaat ttggaacgaa acgaaacact      5100
     ttctcgaggg cttttacaat ggaagataga acaagggctg aaaatatatt gtataaaaaa      5160
     gcacaacgag atatctatcc agatgagcta aaggatctgt cgaaaaataa ccaattaaca      5220
     acaattggac cactcaacaa gtttaatcct gcattagatg aaaatggaat aatacgctcc      5280
     tatagcagac tggaatatgc agagaatata ccaaaagcag caagcatacc aattatactg      5340
     cccaaagggc atcacatcac aaatctaatt gtaaagtggt atcatgaaat gttcaaacat      5400
     catgcagaca aagcggtatt agcagcctta caacaaaagt actttataaa tggtataaat      5460
     actacacttc aatacatcaa agcacgttgt caacattgcc taaatgcaaa agcaaaacca      5520
     agagctccaa ttatggctgc gctaccatca tgccgaactg attcgtttat ctaccctttc      5580
     acacatacgg gagtagatta tttcggcccc ttcgagatat cagtcaatag atcaagggag      5640
     aaacgatggg gcgtaatatt tacatgcatg tcaacaagag ccgtccatat ggagctagct      5700
     gctaaacttg ataccgactc cttcttgctg tgtttcatga acttccagaa tcgtagagga      5760
     aaggtatcgc atctttacag cgataacggg acaaatttcg ttggtgcaga aagagagcta      5820
     cgagaattac tagaagaagt taacaaaaga atgcttaatg gacaagccat aaaactagaa      5880
     ctatcatggc actttaatcc accaagagct ccacactttg gaggagcgtg ggaaaggcta      5940
     attcgaatta ttaaggacaa cctaaaagaa atgattggat cacgcaaaga gcgatcacct      6000
     ccgacagcag aagtcctcag aggagcatta atacaaacag aatacttctt gaattctcga      6060
     ccattaacca acataccgtt aaacagcgag gacgacgaag taataactcc atttcatata      6120
     ttaatcggtc ggtcgggaag tttcgcatta ccattctcct tcaagacaaa tgacctagaa      6180
     agaaaacatt ggaggctcgc tatacactac ggtaaatact tctggagacg atggcataac      6240
     gaatatctac cgcttatagc acaacgtccc aaatggaaca agaaagttga accgatacga      6300
     gtaaacgata tcgtagttat agcggacaac gacgtcgaaa gaggacagtg gttaaaggga      6360
     cgagtaattg aaatcacgga agcacgagat aagcaagtga gatcagttaa ggtaaaaact      6420
     gcgaatggaa tttatcatcg agccgcaacc agcgtcgcag tactcgatgt ttacaaccac      6480
     gattcggcag cggacgaggc aacaaaggca gccaaagaag tatccagcac aactgcgcag      6540
     aagataacaa cgaagcaagc gttcgacgaa tcagcagtag cagagcaggc gttcgacgaa      6600
     tcagcagtag cggaacaggc gatcaacgaa tcagtggtag cggaacaaac gttcaacgaa      6660
     acggcggtag aagcagcagt acacacaacg atggcggaat tcgggacatc aacagcagaa      6720
     gcaacaggag cagtaataaa tccatgtaag caattgccag cagtaactga tgaaacaata      6780
     acgatggaca ccaatgagtc cgaagacgta atcaaacaag gaaaaaacaa ggaaaacgtt      6840
     aaaccatcct caacgaaaac cagccaaacc atcgtaccaa caactactaa acatagaaaa      6900
     agaggacaga aaagagtagc gccatgcaca tgggcctact gcggactaac agctacgact      6960
     aagtacatga aggtcacggt ggacaagagt atgaagaaat cgttgacaga attaaataaa      7020
     acctccaaag gaccaagagt aataaacatc acaccgtgga cgataaccgt tatgatgcta      7080
     atattatgta ttggacaagt tcttggaagc gaactaaaag gactaatagc ctacgactgt      7140
     gctagcaatg atatcaacat tacaagctat tcactagtcg acgtggcatc atgtgaacca      7200
     ccagcaagga atttaacaac aaaagagaca cgaattcaag tattacaacg aagtcctaag      7260
     atactcgtcc atgtacatca atgcaaagta ataataaaac gctcaataag acattgtggt      7320
     gcgttttcac atacttcaga ctatgaatac ggatacgcat acatagtaaa ggaattcact      7380
     ccggacgaat gtcgactagc tcaacttcgt ggatcgatta cactaacaga taactacaag      7440
     attcaagaat tgcgccgaaa cagcacaaca agaggtgaat cgctaatagt aggaagctta      7500
     aagggaactt cttgcaatgg tggagtctat cgaacaccag aatatacttg ggaaggcgct      7560
     cttgtattct acgagtacga aattagtatg catgattacg tagctactgc cgacatcgaa      7620
     aatgatcagg tgacattaag gaatggaatc atatgctcat atagtaccgg atggtgctta      7680
     gatgctgaat ttggatatat aacttgggag atcgacctca aaagacagtg tgaagaaatc      7740
     gagttcgaag ttatctacga aggaaacgtc aacaaaacct tcgataacga tagaaaatca      7800
     aaagcagttt acactttgct ttctgataca catatgtttt ccataagagc gaaagacagg      7860
     actcaaatat gtggctttga cggctacatc acagatcatc cgagaatttc catattagaa      7920
     gcaaacgtat tcaaatcacc gttccgacgt aaggcaagca atggcagaaa tctagatctt      7980
     tttacatatt tcaactcaaa aattactctt gtggaaaact acctaggaga gaaattaaat      8040
     gaagtctata caaacgtcat gactgaaatg tgtaaaatag ataaatcgct tatggagaca      8100
     aagcttacac tcgcaagagt aaaccccagc gaattcgttt ccaatattgt taaacgttct      8160
     ggattcacag cgatcgttgc agcagaagta ctttacatac tcgaatgtaa accagttttt      8220
     gtaacatacg aaagtaaaga agattgttac caagaaatac cggtaaaata caataataac      8280
     tcgatgttca tggcacctgt aacacgcata ctacaactac ggggaactga aatcgattgt      8340
     acaccacttt tgccagcaaa attcactatc ggaggcagat ggtatacaac ggatcaaaga      8400
     ttgagggaat cgaatccacc aagaaaattg acaaccgacg tgataacaag ctggtcctat      8460
     acttcactac caagtcttat gcaaagtgga gtatacgacg ccgatagcct tgagaaaatg      8520
     aaaagtatgg tctatgaaca aggagacaag aaaattgcgt cgtcagtact acataagatg      8580
     ataaccggaa aacatccaga tctacaagga ttttcattcg aagcacttat ttcggagaaa      8640
     ataatcgata atgtattaca taaatattgg actaaactca tcagttggtc gacctggcta      8700
     ggaaacgtaa cttcaacggc aattggtatc tacatgatcg gaagaattat taaattctta      8760
     atagatacgc taatacatgg aagaatacta tatgatatat acggacttgg ctggcagtta      8820
     cttgcatcgt tctgggattc gttgacaaac tttttatcac atcgaaacgt aatgaaacaa      8880
     cgacaagaaa ccggcgatat agaagaagac atccagttaa caacaacagc aactaccgcc      8940
     aaagcgttcg ctcaaccacc ggcgggaaac acgcatcatc aagttggagt atgcatttat      9000
     cctagactag ataacaagta agcaccaatg ttagaaatta agtgagtgca aaaaacaata      9060
     tcaatatttt taatataata atccaatcat tgaataaaaa aaaaaacgca cttaagcgta      9120
     atgaaaaatg caatcttaat tacaatttta atctacaaaa ttaatctaca aaattaatct      9180
     acaatttacg atttcacact tatacgttta ctttataaca cgtcgcgaaa ttgttgtaaa      9240
     acagtagttt tacgaggggt gg                                               9262
//
ID   BEL-652_AA-LTR repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-652_AA-I;
KW   BEL-652_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1277
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1277
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 103-103 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1277 BP; 414 A; 260 C; 241 G; 362 T; 0 other;
     tgttaagaat cgcgacgaac ttgcataatc aatcctaatt tcggataaat taattatcaa        60
     ttaatcagct attcgaaaca cggtccatgc atcatagaac gatagtccac gcacaagcgg       120
     tgcagcataa gcataaagaa aggacaaaat ttcacacaga agtgccatgc accgtgtatc       180
     gatcgttcca acggacgaga ggatatcgca taaaaaggaa taaatattgc tttagggacg       240
     ttaggaaaat aatgtttcgc tccgatcgtg tgcgctacct tagattagaa gaaaatagat       300
     aagaaggtgc gatctcgaca ttgctctccc attcgaaaca taggcaataa aaatttataa       360
     catgatcaag tctagaatgt tccaaatgca catccggttg gataagcata acaacaaaaa       420
     taaacattca ttcattccgt gttttaggat agtgataatt gtatgcaaac ccctataaat       480
     aaggaaaatt tcagaaatac accagttacc ttttcgacac tcgaaggaga cggttcaatc       540
     cttagaaaga aatccaaggt aagaccagca atcagttttc ttctatgaag aaaattaatt       600
     gttacatgta gaattttcta tccttagctt tccaccgtca ggtactaggt ttactagcct       660
     gccagtctga aagtcgaaag gattagaatt cttccacggt ctccttaatc agagtaaccc       720
     gactaaattt tggttccttc gattgtagac tacccaccta tggtggtgtg tcattttgac       780
     gttccaagat ttagttagat taaacgctat tgaactgtac tagttttcca ccgtcaagta       840
     ctaggtttaa ctagcttgac agtctgagaa cgaaatacgg aacggtaatc gttgactctg       900
     aattgcaacc acagcattgc gatctatttc aagctaccac cgtcaggtac tagacttcct       960
     agcctgccag tctgtagtat tgagaagatt gcattactta ctctcgtcgt ataagtgatt      1020
     caaaaataag agtaagattt tgctcccctt cgattgtaga tcacccgtta attcggcgtg      1080
     tcatttcgac ggatcaaaat tgtactctag aaagttccac ggactacttt aacctccact      1140
     ttcagttact aggcatacta ggctgaatag tctgagggac ttaagtaata cgtgtaattt      1200
     tcgaaatcgt aaggttgaaa taccgtcgcg ataaatcgaa ccttcgctcg aatgcgcgac      1260
     gatacgaaac tttaaca                                                     1277
//
ID   BEL-653_AA-I repbase;    DNA;    INV; 6925 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-653_;
KW   BEL-653_AA-I; BEL-653_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6925
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6925
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 94-94 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..6922
FT                 /product="BEL-653_AA-I_1p"
FT                 /translation="MNLQSNVRQTRSRTRAIQQANNLNTYGTDEPSNQPSD
FT                 DKSDDSFIPSMVDSDGGEFHDCVGCDRPNNFERYMVQCQGCNHWYHFSCAN
FT                 VNTTTVRSTSFKCTKCIPGEVPNASEASPSEVSNSSSMRRVRVELELRRLD
FT                 EERKLLEDLSRERIEKERALNERELQERLEREKQFIARKHELLSQNDGDEG
FT                 RSMRSMRSSQSSRKRTEDWVRQAKVAESSGRAIDLTPTSMSVSAGHLEDPQ
FT                 VVHPSSTPLRTVISPVGHPLIGDNVAGTGSEVKSIPGTLGSITIGEDSEDS
FT                 VEGAVGVDVNQIKQTSDLPFVDLQPYADILKIEDAAPIIPNTGAISKLTRF
FT                 GDHCYKRWSVETGDLRRRNAMQIQHHVEIERDNIRDLSKKYQVDIEARRKR
FT                 ELELVNRIASLQVQYERELKVVRESEEGLRMQLKRRDCELAALKNKVGIIE
FT                 KQRIEEKERFCTSEADLRDQLNRCKRDCEALQFQLAEIENEVQSLRDLERQ
FT                 LQSEINAGRQRENEAIRLRNVAEKEYRELHEEVQQIINEGRSTDGRSSPPL
FT                 PPPPASWLDSTDAPTGGIGNQGESCFPPVPVPLLPMDERMFGGRLEFGEPF
FT                 RVPNGEPNNIPGTFHSTSNVFAPISRIATQPTSQTFLPTYVNTTGPSPQQL
FT                 AARQVVTKELPIFSGDPVDWPLFISSFRHSTETCGYTDSENLLRLQRSLKG
FT                 GAKDSVSSFLLHPATVPQVISTLQQLYGRPEQIVNNMIAKVRATPPPKPDR
FT                 LETLVSFGLVVQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFNWALY
FT                 QEQAPVVDLSVFSDYMAKVSSAASGVTQLVSIPQKAIREERSRQKEKSFVN
FT                 AHVTTEQSSRNQEAVKAVTNDGKRKENDIGLSNGKSCSICNTDSHQIGNCA
FT                 TFKRLDLDGRWKAVKVNKLCARCLTPHARWPCKGEICGINECPKRHHRLLH
FT                 FEPPAKTTSAVVTIHRQLSSSTLFRILPVTLFGKRGQLNTYAFLDDGSSVT
FT                 LVERSIADAIGVSGDLETLHIEWTGGINKTITGTEVVTMDISALGRTKRYK
FT                 MSEVYTVDNLGLPRQTTDYEELAARFDHLSNLPIKSFKSAVPGILIGQSNC
FT                 HLLATLKLREGKLNEPIATKTRIGWAVCGSLRKPQSNTMRKLLHMHAEPTV
FT                 VDLHEYVRRFFDIESLGVAVVPAVKGAEEQRACDILAATTRRTNTEKYETG
FT                 LLWKHDYVEFPDSRPMAEKRFKCLEKRLARDPNLYDGVRQQIAEFKNKGYI
FT                 HEATAGEIHGFDLRRTWYLPIGVVVNEKKPGKVRIIWDAAAKVDGISLNTM
FT                 LLKGPDLLTPLLSVMFPYRERQVAVSADIKEMFLQIMIRQQDRSALLFPYR
FT                 DSPDLPMTTMVSDVAIFGAACSPAHSQYVKNLNATEQEAELPRGAAAVKKR
FT                 HYVDDYVDSFDTVEEAVEVAKEVIEVHKRAGFHIRNWMSSDGSVLEKLGES
FT                 SAKPSKAMFPEKEIGVERVLGMAWIQDEDVFAFSLQLCEKVRCLLQDTKTP
FT                 TKREMLRLVMSIYDPLGLVASFVIHGKILIQEVWRTETDWDSHIPEEIAAR
FT                 WAEWIAVLNKMNGLRIPRCYFPGYDPESFKTLQLHVFVDASAQAFSAVAYF
FT                 RIIDQGQIRVALVSSKTKVAPLRGLSIPRLELMAALLGARLRKTIEQNHSL
FT                 KIRKTYFWSDSSTVCSWIKSDTRRYRQFVAFRVDEILNLSSIDEWRWISTK
FT                 VNVADEATKWGKGPSCNVDSRWFQGPEFLYSYETDWLPVPDEGVDESDKEL
FT                 REAYVCSHLVRESLVDVERFSRFERLLRSVAYVHHFVDNLRASKKSTPNDT
FT                 VGLTSAEIQSAERTLWLLAQSEAFPDEVAVLKRNLDQSGVSQRQIKASSCL
FT                 VKQSPFADEYGVLRVGSRAAEAQVLAYNAKFPIILPRKHRITELLVDFYHR
FT                 KYGHANDETIVNEIRQKFHVARLRVEIRLTRKRCMWCRVYKATPVAPKMGP
FT                 LPAIRLEPCVRPFTYVGVDIFGPYLVKVGRIAAKRWVCLFTCLTIRAVHLE
FT                 VVTSLSTDACKKAIRRFVARRGSPQEIYSDNGTNFVGASRELQDEIGRIYT
FT                 ELGSTFTNAQTQWRFNPPAAPHMGGCWERMVRAVKSALGCIPVVRKLDDES
FT                 FVTVLVEAENMVNSRPLTFIPLETADHEALTPNHFLLLSSNGVREPEKFPT
FT                 DAGMALRNSWNLVKHTLDCFWRRWVVEYLPTIIRRTKWFRDVQPINVGDLV
FT                 LVVDENVRNRWLRGRVIRTIPGKDGVTRQAEVKTSGGGILKRPATKLAVLD
FT                 VAKSGDAEPEVKATPGG"
XX
SQ   Sequence 6925 BP; 1949 A; 1500 C; 1852 G; 1624 T; 0 other;
     gttacttaaa gattttatcc agatcgagat gaatcttcag tcgaacgttc ggcagacccg        60
     atcacggacg agggccatcc agcaggcaaa taacctcaac acatatggta ctgatgagcc       120
     atcgaaccaa ccttcagatg acaagtcaga tgattcgttc atcccgtcca tggtcgacag       180
     cgacggaggt gagtttcatg attgtgtggg atgtgatcga ccgaacaatt tcgagcggta       240
     catggtgcag tgtcagggct gtaaccactg gtaccacttt tcatgtgcga acgtaaatac       300
     aactactgta cgttccacca gtttcaagtg tacgaaatgt atccctggcg aggttccaaa       360
     tgcttcggaa gcatcgccaa gcgaggtttc gaattcgtcc agcatgcgca gggtcagagt       420
     tgaacttgaa ttgaggcgcc tcgacgaaga gaggaagctt ctggaagatc ttagtcgtga       480
     gaggatcgaa aaggagcgag cacttaatga acgggaactt caggaaaggc ttgaacggga       540
     aaagcagttc atcgctcgga agcacgaatt gctgagccag aatgacggtg atgagggtag       600
     aagcatgcgc agtatgcgga gcagtcagag tagtagaaag cgaacagagg actgggttag       660
     gcaggccaag gtagccgaga gttccggcag ggccatcgac ctgacgccaa cgtcaatgtc       720
     tgtgagtgct ggacatctgg aagatccgca ggtagttcac ccttcttcaa cgccacttag       780
     gactgttatt tctcccgtgg gtcacccttt gatcggagat aacgtggcag gtactgggtc       840
     agaggtgaaa tcgatcccag gaaccttggg aagcatcacg attggagaag attcggagga       900
     ttctgttgaa ggtgccgtcg gagtagacgt caatcagatc aagcagacat ccgatttgcc       960
     tttcgtcgat cttcagccat acgcagatat cttgaagatt gaggatgcag caccaattat      1020
     tccgaacacc ggtgctattt ctaaattaac tcgtttcgga gaccactgct acaaacgttg      1080
     gagcgtagaa actggagatc ttcgaaggag aaatgccatg cagatccagc atcatgtgga      1140
     aatagagcgc gacaacatcc gggatttatc gaagaaatac caggtggaca tcgaagctag      1200
     acgcaaacga gagttggagc ttgtgaatcg gattgccagt ttacaagtac agtacgagag      1260
     agagctgaag gtagttcgtg aatcggaaga aggtttgcgg atgcagttga aacgtcgcga      1320
     ctgtgaactg gcagccttga agaataaggt tggcattata gagaagcaac gcatcgagga      1380
     gaaggagcga ttctgtactt cggaagcaga tttacgggat cagctaaatc gatgcaaacg      1440
     ggattgtgaa gcacttcagt tccagttagc ggaaatagag aatgaagttc agagtcttcg      1500
     agacttagag cggcagttgc agtccgaaat caatgcggga cgccagcgtg aaaacgaagc      1560
     gattcgtctg cggaatgtag cagaaaagga gtacagggag ttgcatgaag aagtacaaca      1620
     aattatcaac gaaggtagat caacagacgg tagatcttct ccaccgttgc caccccctcc      1680
     agcgtcttgg cttgactcaa cggatgcacc cactggtgga atcggcaatc aaggagagtc      1740
     ttgttttcca cccgttcccg ttccactact tccgatggat gaaagaatgt ttggtggtcg      1800
     ccttgaattc ggggaaccgt tcagagttcc taatggagaa cccaataata ttcctggtac      1860
     attccactcc acttccaatg tcttcgctcc tatttcgaga atcgccactc aaccaacttc      1920
     acaaactttt ttgccaacct acgtaaatac tactggacct tcacctcagc agcttgcagc      1980
     tagacaggtt gtcactaagg aactcccaat tttctccggg gatccggttg attggccgct      2040
     gtttataagc agcttccgcc attcaacaga gacttgtgga tataccgatt ccgaaaacct      2100
     tctgcggttg caacgtagct tgaaaggtgg cgcgaaggat tcagttagca gttttttgct      2160
     tcacccagcg actgtgcctc aggtaatatc cacactacaa cagttgtacg gccgtccaga      2220
     gcagatagtc aataatatga ttgccaaagt tcgggcaacc cctcctccga aacctgaccg      2280
     actggagaca ctcgtaagct ttggactggt tgtacaaaat ctttgtggac atctgaaagc      2340
     cgtggggtta gagagacatc ttgcgaatcc aatattgctc caggagttgg tagacaaact      2400
     gccagcgaca gtgaagttca attgggcact ttaccaagaa caagctccag tggtggattt      2460
     aagcgtcttc agtgattaca tggctaaggt ctcatccgct gcaagtggtg ttacacaact      2520
     tgtcagcatc ccacagaagg caataagaga agagcgaagc cgacagaagg aaaaatcgtt      2580
     cgtaaatgca cacgttacca cggaacaatc tagtcgtaac caagaagcag taaaggctgt      2640
     gaccaacgat ggtaagcgga aagaaaatga tattggccta agtaacggga aatcgtgttc      2700
     gatctgcaac accgatagcc accaaattgg aaattgcgcg acgttcaaaa gactggactt      2760
     ggatggaaga tggaaggcag tgaaggtgaa caaactgtgt gctcgttgcc ttacacctca      2820
     tgctaggtgg ccgtgtaaag gagagatctg tgggatcaac gagtgcccca agcgacacca      2880
     tcgtttgctg catttcgaac caccagcgaa gactaccagt gcagtagtaa ccatccatcg      2940
     gcagttgtca tcgtctacgc tcttccgcat tctgccggtt accttgttcg ggaaaagggg      3000
     tcagctcaat acctacgcct tcctcgacga cgggtcttct gtaacacttg tggagcgatc      3060
     gattgcagat gctattggag ttagcggaga tttagagact ttgcacatag aatggaccgg      3120
     aggaattaac aaaacgatta ccggcacaga ggttgtcact atggatatat ccgcacttgg      3180
     aagaaccaag cggtacaaga tgtcagaggt ttacaccgtc gataatcttg gcttaccgcg      3240
     acagacaaca gactatgaag agctcgctgc gcgtttcgat cacctcagta atcttccaat      3300
     caagagtttc aagtctgctg taccaggaat tttgattgga caaagcaatt gtcatcttct      3360
     agctactctg aaactccgag aaggcaagct aaacgagccg atcgcaacaa aaaccaggat      3420
     cggatgggca gtttgtggaa gtttgcggaa gccacaatca aataccatgc gaaagctact      3480
     ccacatgcat gctgaaccga cagttgtaga tctccatgag tacgttcgtc gtttctttga      3540
     tatcgagagc ttgggtgtag ccgttgtacc agctgtgaaa ggtgcagaag aacagcgtgc      3600
     atgtgacatt ctagcggcaa caacacggcg gacaaacacc gagaagtacg agacgggtct      3660
     gctctggaaa cacgattatg tagagtttcc agacagccga ccgatggcgg aaaaaagatt      3720
     caaatgtctt gaaaagcgtt tagcacggga tccaaacttg tacgacggtg tccggcagca      3780
     gatagccgaa ttcaaaaaca agggatacat acacgaagca acggctggcg aaatccatgg      3840
     gtttgatcta cgccgtacgt ggtatttgcc aattggagtc gttgttaacg aaaagaaacc      3900
     gggtaaagtc agaattatct gggacgctgc agcgaaagtg gacggtatat cgctaaacac      3960
     aatgttgctc aagggaccag accttctaac accattgcta tccgtgatgt ttccatatcg      4020
     ggaacgtcaa gttgcagtgt ccgcagacat aaaagaaatg ttcctgcaaa tcatgatacg      4080
     ccaacaggat cgaagcgcct tgctgttccc atacagggat tctccagatc ttccgatgac      4140
     caccatggta tcggatgtgg caatattcgg ggccgcttgt tctccagcgc actcgcaata      4200
     cgttaaaaac ctaaacgcga cggagcaaga agcggaactt ccacgaggag cagcagcggt      4260
     gaagaagcgg cattatgtgg acgattacgt agatagtttt gacaccgtgg aggaagctgt      4320
     tgaagttgcg aaggaagtga ttgaagtcca caaacgagct ggcttccata ttcgcaattg      4380
     gatgtcgagt gacggaagtg tattagagaa gttaggtgaa tcaagtgcta aaccatcgaa      4440
     ggccatgttt ccggagaaag aaatcggagt tgagcgagtg ttgggaatgg cgtggattca      4500
     agacgaagac gtttttgcct tttcgttgca actttgcgag aaggtgcgtt gtctgttgca      4560
     agacactaaa actcccacta agagagaaat gcttcgacta gtaatgagca tctatgatcc      4620
     gctagggcta gtggcatctt tcgtaatcca cggcaaaatt cttatacaag aagtatggcg      4680
     aactgaaacg gattgggata gccatattcc ggaggaaata gcagctcgtt gggcggaatg      4740
     gattgcagtg ctcaacaaaa tgaatggatt gcgtattcct cgctgttatt ttccgggata      4800
     tgatccggaa agcttcaaaa ccctacagct acacgtattc gtggacgcaa gtgcacaggc      4860
     tttctcagcg gtagcgtatt tccggatcat cgatcaaggg caaatcaggg tggcactggt      4920
     ttcgtcgaaa acgaaggtcg caccacttcg aggtctttcg ataccacgac ttgagttaat      4980
     ggcggcatta ctgggcgctc gtttgcggaa gactatagaa cagaaccatt cgttgaagat      5040
     ccggaaaact tatttttgga gtgattcctc gaccgtttgc tcatggatca aatcagatac      5100
     ccgtcggtat cgccagtttg tcgcattcag agtcgatgag atactgaacc tttccagcat      5160
     tgatgaatgg cggtggattt cgacgaaagt taacgtggca gacgaagcaa ccaaatgggg      5220
     aaaaggtcct tcctgtaatg tagatagtcg ttggtttcag gggccggaat ttctctacag      5280
     ctacgaaaca gattggttgc cggttccaga cgaaggtgta gatgaaagcg ataaagaatt      5340
     acgagaagcg tacgtttgta gtcatctagt tcgagaatca ctggtggatg tcgaaaggtt      5400
     ttctcggttt gaaagattgc tgcgttcggt agcgtacgtc caccatttcg tggataatct      5460
     gcgtgcgtca aagaaaagta cacctaatga taccgttggc ttgaccagtg ccgaaatcca      5520
     gagtgcggag agaacattgt ggcttcttgc gcaatcggaa gcgtttccag atgaagtagc      5580
     ggtgttaaag cgaaatttgg atcagagcgg agtaagtcaa agacagatta aagcatctag      5640
     ctgtcttgtg aagcaatcac catttgccga tgaatacggc gtgttgcggg taggcagtag      5700
     agctgcagaa gctcaggtac ttgcctacaa tgcgaagttt ccaataatac tgccgagaaa      5760
     gcatcgaatt acggagctgc tggtagactt ttatcaccgg aagtacggtc atgcaaatga      5820
     tgaaacaatt gtcaacgaga ttcgtcagaa atttcacgtg gcacgcttac gagtggaaat      5880
     tcgcttaacc aggaaacgct gcatgtggtg ccgcgtttat aaggcgacac cagtcgctcc      5940
     aaaaatggga ccgcttccgg cgatacgttt agagccctgc gtacgtccgt ttacctacgt      6000
     gggagtagac atcttcgggc cgtatttggt gaaggtcggg cggattgcag caaagcgatg      6060
     ggtttgcctt tttacctgcc tgacgatcag ggctgtgcac ctcgaagtag ttacgagctt      6120
     gtctaccgat gcatgtaaga aggcgattag aagatttgta gcccggcgcg ggtctccaca      6180
     agaaatttac tcggacaacg ggacaaactt tgtaggagcc agtcgggagt tgcaggatga      6240
     aatcggaagg atttacacag aattgggtag taccttcaca aatgcccaaa cccagtggcg      6300
     tttcaaccct cctgcagctc ctcatatggg gggctgttgg gaaagaatgg ttcgtgccgt      6360
     aaagtcggca cttggatgta ttcctgtagt acgaaagttg gatgatgaat catttgtcac      6420
     ggtgttggta gaagcagaga acatggtaaa ctctaggccg ctcacattca tccctcttga      6480
     aacggccgac catgaggcgt tgacacccaa ccatttcctg ttattaagtt caaatggagt      6540
     acgagaacca gaaaagttcc cgacagatgc aggaatggct ttgagaaata gctggaattt      6600
     agtgaagcac acactagatt gcttctggcg tcgttgggta gtggaatacc tgccaacaat      6660
     cattcgtcgg acaaagtggt ttcgagacgt tcagccgatc aacgtaggag accttgtact      6720
     tgtagttgat gaaaacgtta ggaaccgttg gttacgggga cgagtaatcc gaactattcc      6780
     tggcaaggac ggtgtgacac gccaagcgga agtgaagact tctggaggag gaattttgaa      6840
     gaggcctgct acgaagttgg cagtgttgga cgtagcaaaa tctggtgacg ctgaaccgga      6900
     agttaaggcg acaccggggg gagga                                            6925
//
ID   BEL-653_AA-LTR repbase;    DNA;    INV; 447 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-653_AA-I;
KW   BEL-653_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-447
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-447
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 52-52 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 447 BP; 169 A; 70 C; 86 G; 122 T; 0 other;
     tgttcgccgc aacagcccct cgtagcggac aaccctgagg agagctgtcg tgagccacta        60
     cctgtgacag aaggatagct aagctggact gtcaaaacgg atgacgagta aaaatatgaa       120
     aataaacata cggtgataat tggattgagc taaagttaca gagaattgaa tttattgaat       180
     tattattgat agcagaggta aattacaatt gtatacttaa atctagaata aaacttatga       240
     actatctaca ggttacatta aaacttataa aatactgttg tgaagtagat aaaacggtag       300
     tacggagact aaaatgtaag ttgaaatgaa tttgtaaaca aaacctatcc taaaataaaa       360
     accgttgttt ttagctttaa gctgatcata cctaatttga agggactgat tattgctgga       420
     agaactccaa tcaactctat cgcaaca                                           447
//
ID   BEL-654_AA-I repbase;    DNA;    INV; 6861 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-654_;
KW   BEL-654_AA-I; BEL-654_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6861
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6861
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 95-95 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6859
FT                 /product="BEL-654_AA-I_1p"
FT                 /translation="MQRSFVRQTRSKTRATQEAARANSPSCSHADSAVPDR
FT                 VERVSFEPSVIDLEHGNDTDCAECRRPNNVEPYMVQCGNCKCWYHLSCANM
FT                 DVATVQSREFVCARCLPKVPAPPAPSTAGRSSISSSRRAQIARELQQLEDE
FT                 RCLREKVEEERLLKEKLLVEKAMNEKLEREKEYLARKHELLRQQDEDAASV
FT                 RSGRSQASSRQKVEAWFKQQLMSEDSPSDGPNKRSKFPDQTTGPVGSSTPV
FT                 EISKTVDVDLSRAPRCAKENVDSIPRTTDSISIGDSSKIDDDGNQRNVQQQ
FT                 LNPGKHSDVSNLALVDIRRYDRILEEANPTNPDIAQISKPSDAGMLPRIVP
FT                 KLIRNPLPYTIWQRETKEIREQHAREQQYSDKREDLQQREQRERELFQLLR
FT                 QSEEQREQDRQRLQEIEAILKRQHDIDLQHQKENDIRRKRELDLINRLKLF
FT                 EQQYAQEKAMRDEEKQKYLATEQQLTEQLEFMRLGYGQISTSGQHTNSPVS
FT                 EHQDLAVSNNPLTATVSESQFDRMKPNQMYQENPNRATSRSGIDSHYKRVG
FT                 TPTTPIVTPKIGPPFDSLEQSHFVNNAPANMNLFEPIHPLPLAQGPTPHQL
FT                 AARQVISRELPVFAGDPIEWPLFISSYNHSTEACGYSNSENLLRLQRSLKG
FT                 AAKEAVSSFLLHPSTVPDVLSTLQTLYGRPEQIVHNLIAKVRSTSAPKAEK
FT                 LETLIQFGLAVQNLCGHLKAVGMENHLSNPILLQELVDKLPANIKFSWALH
FT                 QENLEIVDLNTFSEYMKKVTTATSGVTNFCVLTSATKPAKEERSRAKDKAF
FT                 INAHATHEQNNTKQLNIPSGVSREQYKHAKGKGEEAIKKCPVCNSHDHTAA
FT                 NCAGFKRLSIDGRWNYVKENKLCRRCLICHTRWPCEGEVCGINDCQKRHHR
FT                 LLHYEPTKKQTVNTTNATVTIHRQPVSSTLFKILPVTLHGKNGVVNTYAFL
FT                 DDGSSATLVEQTIANELGVTGRAHSLCIHWTSGINKKIATTELQTLSISEP
FT                 GSQKRFNLSEVYTVENLGLPEQTLNYESLSEEHGHLRHLPIKSFQKAVPGL
FT                 LIGLSNSHLLTTTKLREGKDQEPIAAKTRIGWVICGRVRGGEANFQHRQMH
FT                 LCTDTSDRDLQDYVREFFSVESLGVSVAPHLEGKEEQRARQILEETTVRTA
FT                 SGRFETGLLWKQDSFEFPDSRPMAERRFRCLEKRLESNPELYDSMRQQVAD
FT                 YESKGYIHEVTKEEMSEFDPRRTWYLPLGIVLNPNKPGKVRVIWDAAAKVG
FT                 GVSLNTMLLKGPDLLTPQLSVVFKFREREVAFSGDIQEMFLQVRIRKQDRS
FT                 ALLFVYRNSSRKPMVTMASDVAIFGATCSPAQSQYVKNLNAAENEQHYPRA
FT                 AEAIQKKHYVDDYLDSVDTEEEAVNLALEVAAIHQKAGFRIRNWVSNRSSV
FT                 LEAIGEVSPATVKDFAMNSQSGFERVLGISWIPSEDFFYFTLRLHGDLETL
FT                 VDSEIVPTKRKMLSFIMKIYDPLGLVGSLVIQGKILLQDVWRANVDWDESI
FT                 TEELFVRWKLWLQILKEMDNIKIPRGYFPGYDPACYEDLELHIFVDASAQA
FT                 YCSVAYFRVRDRGQVRCALVASKTKVAPLQLVSVPRIELQAAVIGARLRRT
FT                 IEEGHSIEIKRTYLWSDSSTVISWIKSDARRYRQYVAFRVNEILSLSSTEE
FT                 WRWLGTKINVADEATKWGKGPNCKPDSRWMRGPAFLYEEESEWPRDKFAVA
FT                 DEPLEELRPAYVCSHFLSVPMIDVLRFSKYERLLRSMAYVYRFSEKLLHQT
FT                 RSEHYDDSGNISCEDLRNAEMGLWRIAQSDSYPDEVATLKRNVQLAPDDRQ
FT                 PLSRSSPLANLPPVLDEHGVMRVDARLAAVDYVNHDTKFPIILPKGHPITN
FT                 LLLDWYHRKFRHGNNETIVNEIRQRFYVPKLRLQIRTVAKRCQWCRVYKAT
FT                 PADPKMSELPRFRTTPFLRPFTFVGIDYFGPYLVKVGRSVVKRWVAIFTCL
FT                 TVRAIHMEVVHTLSTDSCKKAIRRFIARRGAPQEVYTDNGTNFIGASRELE
FT                 NELREINLAISSTFTDANTKWRFNPPSAPHMGGCWERMVRSVKTALGTLPV
FT                 SRKLDDESFMTLLTEAEHMINSRPLTFLPLDSQEQESLTPNHFLLLSSSGV
FT                 QQQVKEPIDDRKALKSSWAFIQNRLDSFWSRWIVEYLPVISRRSKWFYDVS
FT                 PIKEGALVLVVDGKVRNLWIRGRVTQTYPGKDGIIRQADVETSTGILRRRP
FT                 VCKLAILDVFDCEHRKAFDYGQDDNVENHGACSKRGGANEQVFKRHEGE"
XX
SQ   Sequence 6861 BP; 2020 A; 1529 C; 1745 G; 1567 T; 0 other;
     ttctcaaaga atcgttacca agatgcagcg atcattcgtt cgacagactc ggtccaaaac        60
     ccgagcaact caagaagcag ctagagccaa ctccccgtcc tgcagtcatg cggatagtgc       120
     tgttccagat agagtagaac gagtcagctt cgagccttcg gtaattgacc tcgagcacgg       180
     gaatgacacg gattgcgcgg aatgtaggcg accaaacaac gtcgagcctt atatggtcca       240
     atgtggaaac tgcaaatgtt ggtatcattt atcgtgcgcg aatatggacg tagctacagt       300
     gcaatcgaga gaattcgttt gtgcaagatg tttgccgaaa gtgcctgcac ctcctgctcc       360
     atctacggct ggacgatcca gcatttcgag ctcgcggaga gcccagatcg cccgagaact       420
     ccaacaactc gaggacgaac ggtgcttgcg agaaaaagtg gaggaagaaa ggctgctgaa       480
     ggaaaagttg ctagtggaga aggcaatgaa tgagaaactt gaacgtgaga aggaatactt       540
     ggcccggaaa cacgaattgc ttcgccagca ggatgaagat gcggcgagcg taagaagcgg       600
     tcgaagtcag gcaagcagtc ggcaaaaggt ggaagcgtgg ttcaagcaac aactaatgtc       660
     ggaagactca ccatcggatg gaccgaataa acggagcaaa tttccggacc aaactacagg       720
     acctgtcggt tcgtccactc ctgtggaaat cagtaaaacc gtcgatgtgg atctctcgcg       780
     agccccgcgt tgcgctaagg aaaatgttga ttcaattcct agaactactg atagtatttc       840
     tatcggggat agttcgaaaa tcgatgatga cggtaatcag cgaaatgtgc aacagcagtt       900
     gaaccctggg aagcattccg atgtatcgaa tctagcgctg gtagatatac gacgttacga       960
     cagaatttta gaagaggcca atcctacgaa tcctgatatc gcccagattt cgaaaccatc      1020
     ggacgcaggc atgctaccga ggatagttcc taagctgatt aggaatcctc taccgtacac      1080
     aatttggcag cgtgaaacaa aagagatacg ggagcagcat gcccgtgaac agcaatattc      1140
     ggataagcgt gaagacttgc agcaaaggga gcaacgtgag agagaattgt ttcagcttct      1200
     gagacaatca gaggaacaac gtgagcagga cagacagcgg ctccaggaaa ttgaagccat      1260
     tctgaagcgg cagcatgaca tcgatttgca gcatcagaaa gaaaatgata tacggaggaa      1320
     acgcgaattg gacctgatca accgactgaa gcttttcgag cagcagtatg cccaggagaa      1380
     agcgatgcgt gacgaggaga agcaaaaata tcttgcaacg gaacagcagc taactgagca      1440
     gttggagttc atgcgactcg gttatgggca gatatcaacg tcgggacagc atacgaattc      1500
     cccagtgagc gaacaccaag acttggccgt gagtaacaac cctttgacgg cgacggtaag      1560
     tgagtcacaa ttcgatcgaa tgaaaccaaa tcagatgtac caagaaaatc cgaacagagc      1620
     aacatctaga tcgggtatcg atagccatta taagagagta gggacaccca ctacacctat      1680
     tgtaactcca aagatagggc ctccctttga ttccttagag caatcacatt tcgtaaataa      1740
     tgctccggcg aatatgaatc tctttgaacc tatccacccc ctaccgttgg cccagggtcc      1800
     tacacctcat cagttagcgg caagacaagt tatttcaagg gagcttccag tgtttgctgg      1860
     agatcccata gaatggccgc ttttcatcag tagctataat cactctactg aggcatgtgg      1920
     ctactctaat tcggaaaatt tgttacgtct tcaacggtct ttgaaaggtg ccgccaagga      1980
     agccgttagc agttttctcc tgcatccatc caccgtaccg gacgtcctgt ctacacttca      2040
     gacattgtat ggtagaccag agcagatcgt tcataatctg atcgctaaag tgcgtagcac      2100
     atcggcgccc aaggcggaaa aactggagac gctaattcag tttggtttgg cagtacaaaa      2160
     tttgtgtggg catctgaagg ctgtaggaat ggagaaccat ctttccaacc ccattctgct      2220
     acaggagctt gtagataagc taccagctaa catcaaattc agctgggcgc tacaccaaga      2280
     aaatctcgag attgtcgatt tgaacacatt tagcgaatat atgaagaaag ttaccacagc      2340
     taccagcggc gtaactaact tttgcgttct tacttctgcg acaaaacctg cgaaggagga      2400
     gagaagcaga gcaaaggata aagcgttcat aaatgcgcat gctacacatg agcagaataa      2460
     cactaagcaa ctgaacattc catctggtgt ttcacgagaa cagtacaagc atgccaaagg      2520
     taaaggagaa gaagcaatta aaaaatgccc tgtttgcaac agtcacgacc acacggctgc      2580
     aaactgtgcg ggttttaaaa gactttcgat cgacggtcga tggaactacg tcaaggagaa      2640
     caagctgtgt cgtcgatgtc tcatttgcca cacgcgttgg ccatgcgaag gcgaggtttg      2700
     cgggattaat gactgccaga aacgtcatca tcgtctactg cactatgagc ccactaagaa      2760
     acagaccgtg aataccacca atgccactgt cactatccat cgtcaaccag tatcgtcgac      2820
     attattcaag atcttgccgg tgacgcttca cgggaagaat ggtgtagtga acacttacgc      2880
     cttcctagac gatggttctt ctgcgacact ggttgaacag acgatcgcga atgagctggg      2940
     agtaaccggg agagcgcact ctttgtgtat tcactggaca agtggtataa ataagaaaat      3000
     cgccactaca gaactgcaga cactgagcat ctcggagccc ggtagtcaaa aacgcttcaa      3060
     cctatcggaa gtgtacaccg tagaaaacct tggccttcca gagcaaactt taaattacga      3120
     atcgctgtca gaagaacatg gacatctacg ccatttgccc atcaagagtt tccagaaggc      3180
     tgttcctggg ctgctaatcg ggttgagcaa ttcgcatctt ctaaccacga cgaagcttcg      3240
     agaagggaaa gatcaggaac caatcgctgc gaaaactcgt atcgggtggg tgatatgtgg      3300
     ccgtgtacga gggggagaag cgaatttcca acatcgacaa atgcatttat gcacggatac      3360
     gtctgatcgc gatctccaag attacgtgcg tgagtttttc tcagtagaaa gtctaggcgt      3420
     gtccgttgct ccccatttgg agggcaaaga agaacaacga gctcgtcaga tcctcgagga      3480
     gacaacagtt cgaacggcaa gtggaaggtt tgagaccggt ctactctgga aacaagactc      3540
     ttttgaattt ccagacagta gaccaatggc tgagcgacgc ttcagatgtc ttgagaaaag      3600
     attagagagt aatccggaac tttacgacag tatgcggcaa caggtagccg actatgaatc      3660
     caaaggctac atccacgaag tcacgaaaga ggagatgtcg gagtttgatc cacgacgaac      3720
     ttggtatctt ccattaggaa tcgtgctgaa cccaaacaaa cctgggaagg tacgagttat      3780
     ttgggatgcg gcagcaaaag taggtggagt gtcgttaaac acgatgctcc ttaaaggtcc      3840
     cgatctgctg actccacagc tatccgttgt attcaagttt cgtgaacggg aggttgcatt      3900
     ttctggtgat attcaggaaa tgttcctgca agtcagaatt agaaagcaag atagaagtgc      3960
     actgttattc gtttaccgga attcatcaag aaagccgatg gtgacaatgg cgtctgacgt      4020
     cgccatattt ggagcaactt gttcacccgc gcagtctcag tacgtaaaaa acctaaatgc      4080
     tgctgagaat gaacaacatt atccaagagc agccgaagcg atccagaaaa aacattatgt      4140
     cgacgactat ctcgatagcg tcgacacgga agaagaagcc gtcaatttgg cattggaggt      4200
     agcggcgata catcagaaag ccggtttccg catacggaac tgggtatcga atagatcgtc      4260
     agtcctagaa gcaatcggcg aagttagtcc agctacagtg aaggacttcg ctatgaacag      4320
     ccagagcggg ttcgaacgag tacttgggat atcatggata ccaagtgagg attttttcta      4380
     cttcaccctc agactacacg gtgaccttga aacactagta gacagcgaga tcgtgccgac      4440
     aaaacggaag atgcttagct tcataatgaa aatctatgat cctttgggcc tagtcggttc      4500
     tctagtaatc caaggaaaaa tcttgctgca agatgtttgg agagccaatg tagattggga      4560
     tgagtcgata accgaagaac tgttcgtgcg atggaaattg tggctgcaga ttttgaaaga      4620
     gatggacaac atcaaaattc cacgaggata ctttccagga tacgatccag cgtgctatga      4680
     agaccttgag ctccacattt tcgtggatgc gagtgcgcag gcatactgct cagtagcata      4740
     ctttcgagtt cgagatcgag gacaagtacg atgtgcttta gtagcttcca aaacgaaggt      4800
     agctccactg caactagtat cggtccctcg gatagaattg caggcagcag taattggagc      4860
     acgactacgc aggacaattg aagaaggcca ttccatcgag atcaaacgta cgtacctttg      4920
     gagcgactct agtactgtta tttcgtggat aaagtcagat gcgcgtcgat atcggcagta      4980
     tgttgccttc agagtcaacg agatactgag cctatcaagt accgaggagt ggcgttggtt      5040
     gggaacaaaa atcaatgttg ctgatgaagc tacaaagtgg ggaaaaggtc ccaactgcaa      5100
     gcctgacagc cgctggatgc gaggacctgc ctttctgtac gaggaagaga gcgaatggcc      5160
     aagagataag ttcgctgtgg ctgatgaacc tttggaagag ctgcgaccag catacgtttg      5220
     tagccacttt ctgtcggttc caatgatcga tgtgctacga ttctccaaat acgagcgact      5280
     gttgcggagt atggcatatg tctaccggtt cagcgagaag cttttgcacc aaactagaag      5340
     cgaacactac gatgatagcg gaaacattag ctgcgaagat ttgcggaatg cagaaatggg      5400
     tctatggcgg atcgcgcagt cagatagtta tccagatgaa gtagcaacgc taaaacgcaa      5460
     tgtgcaattg gcaccagacg atcgacaacc attaagccgg agcagtccgc tagcgaatct      5520
     acctcctgta ttagacgagc atggagtgat gcgagtagat gcacgacttg cagccgtgga      5580
     ttatgtgaat catgatacta aattcccaat aattctgcct aagggacatc cgatcacaaa      5640
     tctgttactt gattggtatc accgtaaatt tcgtcacggc aacaatgaga ctatcgtaaa      5700
     cgaaattcgc caacgattct acgttccgaa acttaggcta cagatccgaa ctgtagctaa      5760
     acgttgccag tggtgtcgag tgtataaggc aacgcctgca gatccaaaga tgagtgaact      5820
     acctcggttc cgtacaacac cttttcttcg gccctttaca tttgtgggta tcgactactt      5880
     tgggccctac cttgtaaaag ttggacgtag tgtagtcaag cgttgggtag ccatattcac      5940
     gtgcctaacg gtacgcgcta tacacatgga ggtagttcac actctatcta ctgattcatg      6000
     caaaaaagca attcgaaggt tcattgcgcg gagaggggct ccacaagaag tatatacgga      6060
     caatggcacc aactttattg gtgctagccg ggagctcgag aatgagttgc gggagatcaa      6120
     tcttgcaatc agcagtacat ttactgacgc gaacaccaaa tggcgattca atccaccatc      6180
     tgctcctcat atgggcggat gttgggagcg gatggtccgt tccgtgaaga ccgccctagg      6240
     taccctacct gtttcacgaa aattggacga tgagtcgttc atgacgttgc tgaccgaagc      6300
     ggaacatatg attaactcta ggccgttaac tttcctgccg ctagacagtc aggagcagga      6360
     atcgctaacc ccgaatcatt tcctgttgct cagctctagt ggagttcagc aacaagtgaa      6420
     agaaccaatt gacgatcgaa aggctttgaa gagcagttgg gcgtttattc aaaatagact      6480
     agattcattc tggagtcgtt ggatcgtcga gtacttacca gtaatatctc gacggtcaaa      6540
     atggttctac gatgtatctc cgatcaaaga gggagcgctg gttttggtgg ttgacggaaa      6600
     agtgcgtaac ctatggatcc gtggtcgagt gacccaaacc tatcccggta aagatggcat      6660
     catacgtcaa gccgatgtgg agacgtcaac tgggatctta agaaggagac ctgtttgcaa      6720
     acttgccatt ctggatgtct tcgattgtga acatcggaaa gctttcgact atggccagga      6780
     tgataacgtt gaaaatcacg gagcatgcag taagagaggt ggtgccaacg aacaagtgtt      6840
     caaacggcac gagggggagg a                                                6861
//
ID   BEL-654_AA-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-654_AA-I;
KW   BEL-654_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-424
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-424
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 53-53 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 424 BP; 139 A; 74 C; 78 G; 133 T; 0 other;
     tgttgcgacg caagtgttca tcgatacacc ccccgacgtc gttgacgttc cgcgggtcat        60
     tgtgtgagac aagaagtcaa atttgaactc tctgtcaaat aaggatgatt acttattatt       120
     ggcaaatcat tgttttggat ggagcaagct ttatcaagtg aattaacttc ttataatatt       180
     tgtacttaag ctaattgtta aattgaatta caggcaactg tgcaactaaa aaacattaaa       240
     taattattgt atacccagga aaattgttat cttaactgag taaggaaccg attgtgagta       300
     ttgcctatta tcttataatt gaattgaagc ctaaccaata aactattaac agctttgagc       360
     ttatcacatc gggaacaaag gtggatttgc ttcaaggaac tccgaaaagt ttcaccccgt       420
     aaca                                                                    424
//
ID   BEL-655_AA-I repbase;    DNA;    INV; 6341 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-655_;
KW   BEL-655_AA-I; BEL-655_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6341
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6341
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 96-96 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..6338
FT                 /product="BEL-655_AA-I_1p"
FT                 /translation="MPRSTKSTRSAKNHCKACKEADNDRMVSCCHCGSWWH
FT                 YECVGVNDSIADPERMFTCPECQRPSAQASVVRIADKKVKSVSSSCSSRAA
FT                 KARLELEKLEAQKALAVKRLELKRREQERKHKEAELIMQQKKAEEEAELQK
FT                 LELQMEETVINESFRLREIIAQEEADDDDMRSVTSEQSATSKVRKWRAFNS
FT                 TMVASAEQAPPIDPNGNEATSATGTTPARQGSNQQPPSQQGVLEDAMTGIS
FT                 LGQSGNEPTLGGLIGRIESTIVSTAGKTMNAPLPPTARLGTSFSTQRTLLD
FT                 QLPSQSFHVPPVSNIGMPLPPNKPSLNNLSITSQVENPSSRNAAQSSAISE
FT                 VNRNSAHQSGGILSVTDLRGGLTPMRPIAVQPGQGHRGDQTNPNGSRVGPQ
FT                 RDLAYQPQTEPVPALQEPVYCGPTPQQLAARHVMAKELPIFSGNPEDWPLF
FT                 ISAYHNSTQACGFSDAENLARLQRCLKGHALESVRSRLLLPAGVPHVLATL
FT                 ETLYGRPELLIHALLQKIRGVPAPKQERLDTLIGFGMAVQHLSDHLEAGRH
FT                 EAHLNNPMLLFELVEKLPAHMKLDWALYKQRCEEVNIRSFAQYMQTLVRAA
FT                 TDVTLQYDPRQQQSQQQRSPKEKIVKDKNFCGAHASEESPRAAKVVEEERR
FT                 TVRLSNPSCLICKNPEHRVKDCLEFRKKTVDDRWKTIQQFSLCRLCLGAHG
FT                 RRPCKIRKHCDIDGCQRRHHPLLHSRQDQIENKRSVEEEKQGKCDRIPPGN
FT                 NVKVSRGEIPLELSEPRPCSSKAATHHHFTGKTTLFRIIPVTLHGNNRTMS
FT                 VYAFLDDGSEKSLIDEEIVKQLGVPGESQPLCLQWTSNVKRTEANSQRVAL
FT                 EISGRIDSKRYTLSDVRTVSKLDLPKQSMRYSELSRAFPYLKGLPVEDYDN
FT                 AQPRILIGNDNAHVTSTLKLRDGQPGEPIAAKSRLGWTIYGSNQERAVDKV
FT                 HSFHICEYRDNDQTLHDLVEQYFTVDSLGIMEVTCPESAEIQRSKRILQET
FT                 TKRIGQRFETGLLWKYDCFEFPDSYQMAVRRLQCLERRMQNDMVIGESVKR
FT                 QMSEYQMKGYIHKATQKELDDSDPRRTWYLPLGVVINPKKPSKIRIFCDAA
FT                 AKVDGISLNSMLLKGPDLLRTLLDVLFGFREKRIALCADLKEMFHQIEIRK
FT                 EDRNAQRLLWRDDPTQEPEVYLMDVATFGATCSPCSAQFVKNRNAEELSSK
FT                 FPAAADAIIRKHYVDDYLDSADNVEEAVKLAKEVKHVHSLGGFHLRNWLSN
FT                 SQAVLTRVGENDPAAEKCLQLDKTSSTERVLGMYWKPDEDIFTFSTISGMD
FT                 IELPTKRQALRVVMSPFDPAGLLSFFLIHGKILIQDLWRAKTDWDQPIPEK
FT                 LRGKWLRWIELFNDMEQVRIPRCYFPYHSINDISSLQLHVYVDASEEAYAC
FT                 VGYLRAVFPDGIRVALVGGKSKVAPLKAQSIPRLELMAAVIGVRFSQTVLN
FT                 GHSLDIQKVFFWSDSKTVLAWINSDHRNYKQFVACRVGEILSRSKPEQWHW
FT                 TSTKKNVADEATKWGKGPRLSPKSRWFRGEEDLYLPEDQWKLSTHLSHEKT
FT                 EEELRTCMVHHKAVIPQFVKWERFSSWTRLVRALGFVHRYSLNLQRKVTNR
FT                 SCMTGPLSQEELSKAEATIYRWIQRENYADELETLSHNMGKQLSEQLRLEK
FT                 CSTIRKLSPFLDEYGIIRSDSRIAAATFAAYDTKYPTILPKEHPGTRLLIE
FT                 WYHRRYLHANGETIVNEIRQRFHISQLRSLVRKVAKDCTMCKIKKPVPVVP
FT                 RMAPLPAARLQAYVRPFSYVGVDYFGPIAVRVHRSTVKRWVALFTCMTTRA
FT                 VHLEIVHTLSAESCKMAIRRFIGRRGAPVEIRSDRGTNFVGSSKDLKLEMN
FT                 KIDRQLAETFTNASTKWLFNPPGAPHMGGVWERLVRSVKTALAAMHTSRIP
FT                 NEETLATVLVEAESVVNSRPLTYIPLETAQQEALTPNHFLLLSSSGTTQTQ
FT                 KTLQNPNQASRSDWNLCRSMVDQFWRRWVREYLPTIARRTKWFEEVKPIEV
FT                 GDLVIIIEEKIRNGWIRGRVAKVVVGRDGRVRDAVVQTVNGMVHRPVAKLA
FT                 RLDIAQGKAGSEIPDQPYGSG"
XX
SQ   Sequence 6341 BP; 1801 A; 1446 C; 1699 G; 1395 T; 0 other;
     aatctgtaag atcgtatcca gatcgcattg gatcaatatc tgcgatgccg agaagtacaa        60
     aaagtacacg aagtgccaaa aatcactgca aggcctgcaa agaggcggac aatgaccgga       120
     tggttagctg ctgtcactgt ggctcctggt ggcattatga atgcgtgggc gtaaacgaca       180
     gcatcgccga tcccgaacgg atgtttactt gcccagaatg ccagcgacca tcagcacaag       240
     catcggtggt cagaatagct gataaaaagg tgaagagcgt gagctcatcc tgttctagcc       300
     gggcggccaa agcgcgctta gaacttgaga agctcgaagc ccagaaagct ctggcagtga       360
     aacgtttgga gctcaagcgg cgagaacaag agcggaaaca taaggaggcg gagttgatta       420
     tgcaacagaa gaaggcggaa gaggaggctg aacttcaaaa gctggagcta caaatggagg       480
     aaacagttat caacgaatcg ttccgtctgc gcgaaataat tgcacaagag gaagccgatg       540
     acgacgacat gaggagtgtt acatccgagc aaagtgcgac tagcaaggtt cgaaagtgga       600
     gagcattcaa ttcgacgatg gtggcctcgg cggagcaggc tccaccgatt gacccgaatg       660
     gtaacgaagc aacgtcagcg accgggacca caccagctag gcagggtagt aatcaacaac       720
     cgcctagcca acagggagtt ttggaagacg caatgacagg tatttcgtta gggcaatcag       780
     gaaacgagcc aacgttagga ggtctaattg gtagaataga aagcaccatt gtatcgacag       840
     ctggtaaaac gatgaacgct cccctgcctc ccacggctcg gttagggact agttttagca       900
     cacaaagaac gctcctagat caattgcctt ctcagagttt ccatgtcccc cccgtctcaa       960
     atatcggcat gcctttgcct cctaataagc cttccttgaa caatctctcg attacttcgc      1020
     aagtcgaaaa tccgagttct cgaaacgccg cgcagtcgtc cgcgataagt gaagttaatc      1080
     gaaacagtgc tcatcaaagt ggtggaatat tatctgtgac tgatctacga gggggattga      1140
     ctcccatgag accgattgcc gttcaacctg gacagggtca ccgtggtgat caaacaaacc      1200
     caaatggaag tcgagtcgga ccacagcgtg atttagcata ccagccacaa acggaaccag      1260
     ttccagcgct tcaggagcca gtgtattgtg gaccaacacc gcaacaattg gcagccagac      1320
     acgtgatggc taaagagcta ccaatctttt ccggtaaccc cgaagattgg ccgctgttta      1380
     ttagtgcgta ccacaactct acgcaagcgt gcggattttc ggatgctgaa aatctagcga      1440
     gactgcagcg ttgcctcaaa gggcatgcac ttgaatcggt tcggagtcgt ttgcttctgc      1500
     cagcgggtgt tccacacgta cttgctacgt tggaaacact gtacgggagg ccagagctgc      1560
     tgatccatgc actactgcag aagattaggg gagttccagc accaaagcag gaaagactcg      1620
     atacactcat cgggtttggt atggcagtgc agcacctcag cgatcatttg gaggccggaa      1680
     gacatgaagc acatctcaac aacccgatgc tgttattcga gttggtagag aagcttccgg      1740
     cgcatatgaa gctcgactgg gctttataca aacaacgctg cgaagaagta aatattcgct      1800
     cgtttgccca atacatgcag acgttggtgc gggcagcaac cgacgtaaca ctgcagtatg      1860
     atccgagaca acagcaatcg caacagcaga ggtcgcctaa ggagaaaatc gtaaaagata      1920
     aaaatttctg cggagcacac gcatcagaag agtcgccacg ggcggcgaaa gtggtagaag      1980
     aggaacggag aaccgtgcgc ttatcaaacc cgtcatgtct gatctgcaag aacccggaac      2040
     atcgggtaaa ggattgcttg gagtttcgca aaaagaccgt cgatgaccgc tggaagacta      2100
     ttcaacaatt cagcttatgt cgtctttgtc tcggagcaca tggaaggaga ccttgtaaga      2160
     tccgcaaaca ctgtgatatc gatggatgtc agcggcggca tcatccgttg ctgcactcga      2220
     gacaggacca aatcgagaac aagagaagcg tagaagaaga aaagcaagga aaatgcgaca      2280
     gaataccacc cggaaacaac gtcaaggtga gcagaggcga aattccacta gagttatcgg      2340
     aaccaaggcc atgtagttcc aaggccgcca cgcatcacca ttttactggt aaaacgacgc      2400
     tatttaggat cattcctgtg acgttacacg gaaacaatcg tactatgtcc gtatatgctt      2460
     ttctggatga cggatcggag aagtcattga ttgacgagga gatcgtgaaa caattgggcg      2520
     tacccggaga aagccaacca ttgtgtctcc agtggacctc gaacgtgaaa agaacagaag      2580
     ctaattcaca acgagtcgct ttggagatct cagggcgcat agattcaaaa cgatataccc      2640
     tatcggacgt gcgtacagtg agtaaattgg atttgccgaa gcaatcgatg cggtattctg      2700
     aattatcgag agcattcccg tacttgaaag ggcttcctgt tgaagattac gataacgcgc      2760
     agcctcgcat tctcatcgga aatgataacg ctcacgtaac ttcaactctc aagttgagag      2820
     atgggcagcc aggagagccg attgcagcga aatcacgatt gggctggacg atttacggct      2880
     ctaatcaaga gagggctgta gacaaagtcc acagttttca tatttgcgag taccgggaca      2940
     acgatcagac tcttcacgac cttgttgagc agtatttcac tgttgacagc ctgggaataa      3000
     tggaagtcac gtgtccggag tcagcggaaa tccaacgatc taaacggata ttacaggaaa      3060
     ccaccaagcg catcggacag cgattcgaaa cgggacttct atggaagtac gactgtttcg      3120
     aatttccgga cagctatcaa atggccgttc gtcggttgca atgtctggag aggcgaatgc      3180
     agaatgacat ggtaattgga gagagtgtga agagacagat gtccgaatat cagatgaaag      3240
     ggtacatcca caaagcgacg cagaaggagc tcgacgattc ggatccaaga cgtacgtggt      3300
     atctgccttt aggtgttgtc ataaacccga agaaaccgtc gaagattcgc attttctgtg      3360
     atgcagcggc gaaggtagat ggcatctctc tcaacagtat gttgttaaaa ggcccggatc      3420
     ttctcaggac gttgctggac gttctctttg gatttcgaga aaagcgaatt gctctgtgcg      3480
     cggatttaaa agagatgttc caccagatag agattcgaaa ggaagaccgc aatgcgcaac      3540
     ggctgctctg gcgcgatgat ccaactcagg aacctgaagt atatttgatg gacgtcgcaa      3600
     cctttggcgc aacgtgttcg ccttgctcgg cacaattcgt taagaatagg aacgcggagg      3660
     agctttcgtc caagtttcct gccgcagctg acgccataat caggaaacat tatgtggacg      3720
     attatttgga cagtgccgat aacgtggagg aagctgtgaa gctggcaaag gaagttaagc      3780
     atgtccactc cctcggtgga tttcatttac ggaattggct ttcaaactcc caggcagtcc      3840
     tgacacgggt cggggagaat gacccagcag ctgaaaagtg tcttcagcta gacaagacaa      3900
     gttctactga acgtgtgctc gggatgtatt ggaagccaga cgaagatatt ttcacattct      3960
     ctactatatc gggaatggat attgagctac caaccaaacg acaggcactt cgtgtagtca      4020
     tgagcccttt cgatcccgca ggactattat cgttttttct catccacggc aaaatattaa      4080
     tacaagattt gtggcgagcc aagacggact gggatcagcc gattccggaa aagctgcgtg      4140
     gaaaatggtt aaggtggatt gaattgttta acgacatgga gcaagttcgc attccgcgct      4200
     gttacttccc ttaccattcg attaacgaca tttcatcgct gcaactgcat gtctacgttg      4260
     acgcaagtga agaagcatac gcatgcgttg gatacctgcg agcggtgttt cctgacggaa      4320
     ttcgagtagc gctggtggga ggaaaatcaa aagttgctcc gctcaaggcc cagtctatac      4380
     cgcgactgga actaatggcc gctgttatcg gtgtccgctt ctctcagacc gtactcaatg      4440
     gacattcttt ggatatacag aaggtttttt tctggagcga ttcaaagacg gttcttgcct      4500
     ggatcaactc agaccatcgc aactataagc agttcgttgc ttgcagggtg ggtgagattt      4560
     tgtccagatc gaaacctgaa cagtggcact ggacatctac aaagaaaaac gtggcggatg      4620
     aggcgaccaa gtgggggaaa ggcccccgac tatctccgaa aagccggtgg tttcggggag      4680
     aggaagatct gtatctgcct gaagaccaat ggaaactaag cacccacttg tcccacgaaa      4740
     agaccgaaga agaactacgg acgtgcatgg tgcatcacaa agcggtaatt ccacaattcg      4800
     tgaaatggga gcgcttttca agctggacgc gtttggtgcg agcattagga tttgttcatc      4860
     gatactcgct gaacttgcaa cgaaaggtga ccaatcgatc ttgtatgacc ggaccacttt      4920
     cacaagaaga gctgagcaag gctgaggcca caatctaccg ttggatccag agagagaact      4980
     atgcagacga attggagact ctctcgcata atatgggtaa gcagttaagc gaacaactgc      5040
     gactagagaa atgcagtaca atccgtaagt tgtcgccatt tttggacgaa tatgggatca      5100
     ttcgctcgga cagtagaatc gctgcagcaa cattcgccgc atacgacacc aaatatccca      5160
     ccattctgcc aaaggagcat ccagggacgc ggctgctcat cgaatggtat cacaggaggt      5220
     atcttcacgc aaatggtgag actatagtta atgagataag acaacgtttt cacatctctc      5280
     agctcaggtc gcttgtacgc aaggtagcta aagattgtac aatgtgcaag ataaagaagc      5340
     ctgttccagt tgtaccccga atggcaccgc tgccagcggc cagacttcaa gcatacgtac      5400
     gaccattttc gtatgtgggc gtagattact ttggaccgat cgcagtgaga gtacaccgta      5460
     gcactgtcaa acgttgggtc gcactgttta cgtgcatgac tactcgagca gtacatcttg      5520
     agatcgtaca cacactctct gctgaatctt gtaaaatggc gatcaggcgt ttcatcggac      5580
     gcaggggagc gcctgtagag atacggagtg ataggggcac gaacttcgtg ggatcaagca      5640
     aggatttgaa gctcgagatg aataaaatcg atcgtcagct agctgaaacg ttcactaacg      5700
     ctagtacaaa gtggttgttc aaccctccag gagcgccgca tatgggtggg gtctgggaac      5760
     gccttgtgcg ttcggtgaaa acggcacttg cggcgatgca tacctcgcgt atacctaacg      5820
     aagaaacgct ggcgacggtc ttagtggaag ctgagagtgt cgtgaattcg agaccgttaa      5880
     cgtatattcc cttggagacg gcacagcagg aagcgctaac gccgaaccat ttccttctcc      5940
     ttagctctag cggtacaaca cagactcaga agacgttgca gaacccgaat caagctagtc      6000
     gtagtgactg gaatctatgt cgaagtatgg tggaccagtt ctggcgacga tgggtacgag      6060
     agtatcttcc gaccattgcc cgtcgcacta aatggttcga ggaggtgaaa ccaatcgagg      6120
     ttggagattt ggtaatcatc attgaggaga agatacggaa tggatggata cggggacgcg      6180
     tcgccaaggt tgtcgtagga cgtgacgggc gagtacgtga tgcggtagtg cagactgtca      6240
     acggaatggt tcatagacca gtcgcaaagt tggcgcggtt ggatatagct caaggtaaag      6300
     ctggatcgga gatccctgac cagccttacg ggtcggggaa a                          6341
//
ID   BEL-655_AA-LTR repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-655_AA-I;
KW   BEL-655_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-633
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-633
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 54-54 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~100% identical to the consensus.
XX
SQ   Sequence 633 BP; 197 A; 101 C; 127 G; 208 T; 0 other;
     tgttacggag tgcgccaatc tctcacttcg cagtctacga gcgagggccc tttattcgca        60
     gatgacaatt gacgtgaaga gaatctagcg ttattgtata tttgtagtcg tatattgata       120
     gacgtcaagt tcgacgatga tatgcaggat tagggattga ttgtcttact gaacaatgtt       180
     aaaaagattg ttagaagttg atttgagttt tgatcatata aatcctaagt ttattagcct       240
     taaaccgata attaccgtga gtaactaggt aaaacatagc gttctattac taatccgtaa       300
     ttatgtttat agacgattgg tatattactc caattagttc atggacagag tgaagtccaa       360
     gtctcgattt aggctgaggt tataactgta agtggataaa attagttgaa ttggatctcg       420
     taatgaatta tgaatttaca gtatcaaacc gtacaccata cataaaaatc tactttgttg       480
     gggcatcgta aaactagggt gaccgatgta agttgttact attgttcttt tttgttataa       540
     aactaactga atatacttag cttacagccc ttgaattagc atcgaaaatc gcggtgttac       600
     ggcttataag aaccccgaaa gttttcccca aca                                    633
//
ID   BEL-656_AA-I repbase;    DNA;    INV; 6359 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-656_;
KW   BEL-656_AA-I; BEL-656_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6359
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6359
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 97-97 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           685..6357
FT                 /product="BEL-656_AA-I_1p"
FT                 /translation="MVNIPLASSTIVPATVPLLGHISNEPPRLTSDHPRNI
FT                 LKQAFGETSXQHSGSSKQSTKQLRLKLQMQMLDEERQLQEQEYARKKEYLH
FT                 KRYNLLMEIASETSSVIDVEEENREGIVDEWLNIGMNNDHVPVQHRMATGV
FT                 QRENTSVPQPPIQQRHGLLDSTQRIQQGAPYHQRGALPPQRQANSTAQPNV
FT                 IFSQPDPSIQPXCIAPGFSRMRIESPTRVIHNRRLRNEDPSHVTTLEDDCN
FT                 NLTRSQVVARQAVSRELPIFSGTPEEWPLFLSSFTTTTNMCGFTPEENLVR
FT                 LQKCLTGKAHEAVKCMLMHPSNVPQIIATLKMRFGNPEVIVHNLMAKISST
FT                 PAPKVDKLDTIIEFSLAVQNLCATIEACQLEEYTYNIALLRELVDKLPPSI
FT                 KFEWAKYRRDFASINLSVFSSWLYELAETICPLVALPSESKVYRSGKNQPA
FT                 YLHVHAEDLDGKLELSNASSSNKLDKICLVCKGSCPGVEKCQRFGELSYNS
FT                 KWATIKEFGLCRKCLRTHKGACKSQQLCGKNGCEYKHHYLLHNNQRDVVAS
FT                 APLSSEDSTPRATAESHCNTHHIPTNKLLFRVVPVVLYGPGKCLKTFAFLD
FT                 DGSSLSFIDSTLAKELEVTGEREPLCIKWTANTSRMENESDNLTMQISGTK
FT                 DYHQKYTIRGVHTVSSLDLFCQTLNMRELCDQYQHLRGIPAESYQDAQPRL
FT                 LIGVNNANLSYPLKGREGXMYEPVATKTRLGWVIHGGSETNDSFLGYHSIQ
FT                 ACLCDESSADSLGRAMREYFSLEGVGITRPETPLISREDKRANQILGSITQ
FT                 TESGNYQTPLLWKYDEFRLPNSKPVALQRFHCLESRMKKDPLLGNMVRAKI
FT                 EDYLKLGYIRKLTEAEEKSKMDRKWYIPIFPVFNPNKPGKVRIVWDWAAKT
FT                 NGLSLNSMLLKGPDQLVPLNDVLYKFRENKVGISGDIREMFLQVRIAKEDQ
FT                 YCQLILWKENPADDAPSTFVTQVMTFGACCSPSCAQYIKNVNAEKYADKYP
FT                 RAVEAITKQHYVDDMLVSVETEEEAIQLAQNVRGIHAKAGFQIRNWISNSP
FT                 AVVQALEQEKTEQKSLNIGSELATEKVLGMWWCTDTDSFIYKLSSKHSTPL
FT                 LAGERVPTKREVLRTLMSIFDPLGLLSNVLIFLKVLFQEIWRSSIDWDDEI
FT                 PNNLHEKWEHWLRILPKVQDVSIPRCYRSVTSLSSETVIQLHTFVDASELG
FT                 YAAVVYLRFQQGDAVECAIVGAKSRVAPLKFVSIPRLELQGAVIGVRLART
FT                 ISKALSFKIDEFFYWTDARDVLCWLRSDHRRYSPYVAWRVSEILEVTDVES
FT                 WRWVASKNNVADEATKWKRQIDLSCNSRWSKGPGFLRLTREHWPTEPFSTN
FT                 STKEELRASLLYHYVAPEPLLQVERFSTWKHMLRVTAMVIRFVSNIRSKIS
FT                 KTGSSTGPLSRNELQQASNILYRQAQITAYLEEISVLLRPIADQKMIPKSS
FT                 SIFTLNPFLDENRVLRMRGRISACQYVTSDAHNPIILPKDNIITMLIIQDY
FT                 HSRYHHRNHETVLNEVRQVFRIPKLRVVYKKVRATCQICKNERAVPNPPLM
FT                 GDLPTARLAAYARPFSYIGIDYFGPMMVVVGRRSEKRWGVLITCLTVRAVH
FT                 LEIAHFLNADSCIMAIRNFMARRGVPIRIYSDRGTNFVAASKELKEALKDL
FT                 DQERVIQEIVSQQTEWTFLPPASPHMGGAWERLVQTVKANLLQMKPGRLPT
FT                 DEVLRNCLMEIENLLNSRPLTHVPVDDPEAPVLTPNHFLLGSSSGLKPASL
FT                 LDDSSVALRRAWRVSQVEANIFWQRWLRDYSPELTRRTKWFNEVKAIEEND
FT                 IVLIVDPALPRNCWPKGRVIGVNRGRDNRVRSAAIQTMHGIYERPATKIAV
FT                 LDVRRDMEVSQISGVPGG"
XX
SQ   Sequence 6359 BP; 1924 A; 1428 C; 1460 G; 1542 T; 5 other;
     aattaaaatt atcatttaca agatgattgg gcgaacacct atgaaaacga gatccgcgtc        60
     tgcagctagc ggtacaagga ctaggcgtga aggcgatgca ataaatcaaa accatcactg       120
     caaggcatgt acgaatgaag acaacacacg aatggtccaa tgtgacaaat gcaacgactg       180
     gtatcatttc gcatgtgtgt ctgtcgacca agacgtcgct gatcgagatt ggctctgtcc       240
     aacctgtcaa ccagttaagg gagccaaaga gaagagttca gcgattcatg accctgccag       300
     gctgccagtg agcacacata cgtgtaccaa tcctaccgtt agagtgacat cggtgcctct       360
     gaatatcagg ccccaaagtc ctagtcaatt cgcgttgccg catgcagctg tggttgacgg       420
     caccaacatc tcgatgttaa cgcatgtcga ttcaaaccat atgtttccac cgttaagtac       480
     aaccaacgca gctggtgtta tgaataagac cacgctaatg cctccaagta ctttcacgtt       540
     actagtaatg ttcagactta cgcgaccaca ccattgactt tgcctatccc atcggcgtca       600
     caagaatccg cagcataccc gatatcgacc ggtcaaaacc agcatccaat agtatcttca       660
     aaccgcaatc aaccagttgc atcaatggtg aacattcctc tagcatcgag taccatcgtt       720
     ccagccaccg ttccgttgtt aggacacatt tcgaatgagc caccgaggtt gacatccgat       780
     cacccacgaa acattctgaa gcaagctttc ggcgaaacat caastcaaca ctcagggtct       840
     tcgaagcagt ctacgaaaca gttaaggttg aaattgcaaa tgcaaatgct cgacgaagag       900
     agacagttac aggagcagga atatgcgagg aaaaaggagt accttcacaa gcggtacaat       960
     ctgttgatgg aaattgccag cgaaacgtca tcagttatag acgtcgaaga agagaaccga      1020
     gaaggtatag tggacgagtg gttgaatatt ggaatgaata acgatcatgt tcctgttcaa      1080
     catcgaatgg ctactggggt gcagagagaa aatacaagtg taccgcaacc acctatccaa      1140
     cagcggcacg gcttgcttga ttccacccag cgtattcagc aaggagcacc gtaccatcag      1200
     cgtggagctc tccctccaca acgccaagca aattcaacag cgcaacccaa tgttatcttc      1260
     tctcaaccag atccatccat tcaaccacst tgcatagccc ctggatttag tcgaatgaga      1320
     attgaatcac caacacgtgt catccacaac cgacgattga gaaatgaaga cccaagccat      1380
     gttacaacac tggaggacga ctgtaacaat ttgacacgga gtcaagtggt cgcgcgtcaa      1440
     gcagtgtcac gtgagctgcc aatctttagc ggaaccccag aagaatggcc gttgttctta      1500
     tcgtctttta cgactactac caatatgtgt ggctttacac cagaggagaa tctcgtgcgt      1560
     ttacaaaagt gcctcacagg aaaggcacac gaagcggtga aatgcatgtt aatgcacccc      1620
     tctaatgttc cccaaattat cgctacacta aaaatgcgat ttggaaaccc cgaagttatt      1680
     gtgcataacc ttatggctaa aatcagttct acacctgcgc caaaagttga taaattggat      1740
     acgatcatcg agttctcttt agccgtacag aacttgtgtg ctaccatcga agcatgtcaa      1800
     ttggaagagt acacatataa tattgcactg cttcgcgaac ttgtggataa acttccgcca      1860
     tctatcaaat tcgagtgggc caagtataga cgtgattttg caagcattaa cctttccgtt      1920
     ttctcctcgt ggctgtacga gctcgcggaa accatttgcc cccttgtcgc attgcctagt      1980
     gaatcaaagg tatatcgttc cggtaaaaac caaccagcat atttgcatgt acacgccgaa      2040
     gatttagatg gtaaattaga actctctaac gcgtcgtcgt ccaacaaatt agacaaaatt      2100
     tgtttggtgt gcaaaggcag ttgtcccggt gttgaaaaat gtcagcgatt tggagaacta      2160
     agctataact ccaagtgggc cactatcaag gaatttggct tatgcaggaa atgtttgcgg      2220
     acccataaag gggcgtgcaa atctcaacaa ctctgcggca aaaacggatg cgagtacaag      2280
     caccactact tactacataa taaccagcgc gatgtcgtgg cctcggcgcc cctcagtagt      2340
     gaagattcga caccaagagc aacggctgaa agtcattgca acacgcatca cataccaact      2400
     aacaagctac tgtttcgagt tgtacctgtt gtgttatatg gaccaggaaa gtgtttgaag      2460
     accttcgcct ttcttgatga cgggtcttcg cttagcttta tagattcgac attagcaaag      2520
     gagttagagg tcaccggcga acgtgaacct ctttgcatca agtggactgc aaacacaagt      2580
     cgcatggaaa acgaatcgga taatctaact atgcagatct caggaaccaa agactaccat      2640
     caaaaataca cmatacgggg agtacacacg gtttctagtt tagatctgtt ctgccaaact      2700
     ctcaacatgc gggagctctg tgatcagtat caacacttac gtggaatacc agcagaatcg      2760
     taccaagatg cgcaaccgag actgcttata ggagtgaaca acgcaaacct aagctaccct      2820
     ttgaaaggac gagaaggamt aatgtatgaa cccgttgcta ctaaaactcg tcttggatgg      2880
     gtaattcacg gaggatcgga gacaaatgat tcgtttcttg gatatcacag cattcaagcg      2940
     tgtttgtgtg atgaaagctc agctgattcg ttggggcgtg ccatgcgtga atatttttca      3000
     ctagaaggag taggtattac cagacccgaa acacctttga tatccagaga agacaaaaga      3060
     gcaaatcaga tcctcggttc gattactcag acggaaagtg gtaattatca aacccctctg      3120
     ctctggaagt atgatgaatt ccgtttacct aacagtaagc ccgtggcatt gcaaaggttt      3180
     cactgtttag agtccagaat gaaaaaagac cctttgcttg ggaacatggt aagagcaaaa      3240
     attgaagatt acctgaagct cggctatatt agaaaactca cagaagcaga agagaagtca      3300
     aaaatggacc gtaaatggta tataccaata tttcccgtat ttaaccccaa taaaccggga      3360
     aaagtaagaa ttgtgtggga ctgggcagcg aagacaaacg gattgtcctt aaattccatg      3420
     ttattaaaag gaccggatca acttgtaccg ttgaatgatg tgctgtacaa gtttcgtgaa      3480
     aacaaagttg ggatcagcgg agacatcaga gagatgtttt tgcaggtgcg aatcgccaag      3540
     gaagaccagt actgccaatt aattttgtgg aaggagaatc ctgcagatga tgcacccagc      3600
     acgtttgtca cccaagtcat gacatttggg gcatgttgct ctccgagttg tgcccagtat      3660
     ataaaaaatg tgaatgccga aaagtatgca gataaatacc ctagggcagt ggaagctatt      3720
     accaaacaac actatgtgga tgacatgctg gtaagcgtcg aaacggagga agaggccatc      3780
     caattggcgc aaaacgttcg aggcatacac gccaaagccg gttttcaaat tagaaattgg      3840
     atatccaact caccagctgt cgttcaagcc cttgagcaag aaaaaacgga acagaaaagc      3900
     ctaaacatcg ggtccgagct agccactgag aaagttctcg ggatgtggtg gtgtacggac      3960
     accgacagct tcatctacaa actgtcgtct aaacatagca ctccgctctt agcaggagag      4020
     cgtgttccca ctaaacgtga agtgttacga acactcatgt ccatattcga tcctctgggc      4080
     ctgttatcca acgtgctgat cttcctgaaa gtactatttc aagagatatg gcgatcgtct      4140
     atagactggg atgatgaaat tccaaacaac ttgcacgaga aatgggaaca ttggttgcgg      4200
     attctaccga aagtccaaga tgtctcgatt cctcgctgct accgttctgt aacttcctta      4260
     agttccgaga ctgtgatcca gttgcataca ttcgtggacg ccagtgaatt gggttatgct      4320
     gcggtagtgt atctacggtt ccaacaaggc gacgcagtag agtgtgctat tgtcggagcg      4380
     aaatcgcgag tagcaccact taaatttgtc tctataccga ggctggaact gcagggtgcg      4440
     gtcatcggtg taaggcttgc ccgtaccata tcgaaagcat tgtctttcaa aattgacgaa      4500
     ttcttctatt ggaccgatgc ccgtgatgtt ttgtgctggc tgaggtcgga tcatcgtagg      4560
     tactccccgt acgtagcatg gcgtgtcagt gaaatactag aggtaacaga tgtggaaagc      4620
     tggcgatggg tagcgtccaa gaataacgtt gcagatgagg ctacaaaatg gaaaagacaa      4680
     atagatctca gttgcaacag tagatggtct aaaggacctg gatttttacg ccttacacgt      4740
     gaacattggc ctactgaacc attttcaacc aattcgacaa aagaggagct tcgagcaagt      4800
     cttttatatc actacgtggc tccagaacct ctgttacaag tggagagatt ctcaacatgg      4860
     aaacacatgc taagagtaac ggcgatggtt attagattcg tctcaaacat tcgaagcaag      4920
     atcagtaaaa ctggaagcag tacaggtcct ctttctagaa atgagttgca acaagcttcg      4980
     aacattcttt accgacaagc ccaaatcaca gcatatctag aagaaataag cgtcctctta      5040
     cgaccaatag ctgatcagaa aatgattcct aaaagcagct ctatatttac attaaatcca      5100
     tttctcgacg agaatcgtgt actgcgtatg cggggtagaa ttagcgcgtg ccaatacgtt      5160
     acttctgacg cacataatcc aataatactc ccgaaggaca atatcataac tatgctgatc      5220
     attcaggatt accactctcg gtaccatcac cgtaatcatg aaaccgtact gaatgaagtg      5280
     cgtcaagtat ttcggattcc aaagttacga gtagtttata agaaagtacg agctacttgc      5340
     caaatatgta agaatgaacg agcggtccca aatcctcctc taatgggaga cctgcctact      5400
     gcgaggttag cggcatatgc acgacctttt tcttacatcg gcatagatta ttttggtccg      5460
     atgatggtgg tggttggaag aagaagcgaa aagcgttggg gcgtattaat aacatgtttg      5520
     acmgtaagag ctgtgcattt agaaattgct catttcctga acgctgattc ttgcattatg      5580
     gctataagaa atttcatggc aagacgaggc gtgcctatca gaatttatag tgatcgaggc      5640
     acaaactttg tggcggctag caaggaatta aaagaagctt tgaaggattt ggaccaagag      5700
     cgagtgattc aagaaatagt cagccaacaa actgaatgga cattcctccc accagcatct      5760
     ccacacatgg gtggagcttg ggagcggctt gtccaaactg tgaaagccaa tctattacag      5820
     atgaaaccag gacgactgcc aactgacgaa gttctgcgca actgcttaat ggagatagaa      5880
     aatcttctga actctcgacc tttgacccac gttcccgtgg atgatccgga agcccccgtc      5940
     ctaactccta atcatttttt attgggatca tctagcggtc tcaaaccagc ctctcttctg      6000
     gacgatagca gtgttgcatt acgaagagcc tggcgtgtgt cccaagttga agcaaatatc      6060
     ttttggcaac gatggctgag agattattca ccagagttaa cgaggcggac gaaatggttc      6120
     aacgaggtga aagcgataga ggaaaatgat atagtgctca ttgttgaccc agcactccca      6180
     cgcaactgtt ggcccaaagg tcgtgttatt ggagttaacc gaggaagaga taatcgagtt      6240
     agatcagcag caatccagac catgcatggt atctacgagc gtccagcaac gaagatagct      6300
     gtattggatg tacgtcgcga tatggaagta agccagatat ctggcgtacc cggggggag       6359
//
ID   BEL-656_AA-LTR repbase;    DNA;    INV; 658 BP.
XX
AC   .
XX
DT   24-NOV-2018 (Rel. 24.01, Created)
DT   24-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-656_AA-I;
KW   BEL-656_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-658
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-658
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 55-55 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 658 BP; 236 A; 106 C; 115 G; 201 T; 0 other;
     tgtcacgacc cctcggtcgg cgctccacat caaaccgatc tgcattgact aactatggtc        60
     atcgttcacg tcaaacttag caaatgatgt cagttagcct caggtataga aaagatgaga       120
     agagtgataa gtgcgaaagt ggcgtgctgc cgtaaagtaa aagaatttat gaatttataa       180
     aaaaaaatcg tagtaacgat ctaattagtt acattcaata ttatatttga ggtaaatcta       240
     tttcgttcat gtatatctat aaaataattg aattcctaat gcttcagatt aatgaactag       300
     ttgctaccta tataacctat aatcaattga actgtggact gtcggttaga tttggattta       360
     aaactacaat ataatccatt ctaagttagt atagcgatta ttgatctatt taaaacatgt       420
     aatgaaatgt cgcctttgaa tagctacagg agcctcgcag aaccgataat tgatctaagg       480
     agtgtgtcta cccaggagaa taatgggaat gaactaaatg taagtggcta aaattgaatt       540
     aaaacacata tcctaatatt tatattttta ggataatttt aactctcgca ataaaaaggg       600
     gaattaaaaa atcagaaaac cgctcattat tcactccttg ttgactcgga agtcaaca         658
//
ID   BEL-657B_AA-LTR repbase;    DNA;    INV; 678 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-657B_AA-LTR;
KW   BEL-657_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-678
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-678
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 107-107 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus. The corresponding internal
CC   region is still BEL-657_AA-I.
XX
SQ   Sequence 678 BP; 235 A; 108 C; 124 G; 209 T; 2 other;
     tgtaccgggc ggcgttacac ccgttggaga tgtggcagaa atacccacag ggaagctgca        60
     aatctgacgt ctagtctgtc aactcttagt tctgctagta tgagtaaagt agaagattgt       120
     tgatgaacta tacgtgtgat ctgaaaggca tgcagttgaa ttkktcatta aaatcgctga       180
     atttattagt ttaattataa aaagcttcca aatgaaattc ttaatttgtg cattgaaatt       240
     aggatgttat caggttgtga gtcggatact gaaaatgagc cttaaaaatg aattattact       300
     aaatcaaatc cacatacaca atttcaggtt agattccatg cacagataaa ctctatttaa       360
     ttaattgaac ttaaacctaa actacatgca acaagtacgg actgtgagta aactaatgac       420
     tatacctacg actatgactt ataactaagg aaactacttt caaaacagat agattgacta       480
     taaaatatca caggacggtt gtaaggacgt tgaaaaggtt gactaggagt cacagaattg       540
     tgagtattgt tatctattta tcaagcaatc caagtattac aattatatta ttcttttagc       600
     tttaaagctt ttccataaat aaaatgaatt gctataagaa ccgtggtttc ttggtctacg       660
     taacgagccg tgcctaca                                                     678
//
ID   BEL-657_AA-I repbase;    DNA;    INV; 6515 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-657_;
KW   BEL-657_AA-I; BEL-657_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6515
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6515
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 109-109 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6513
FT                 /product="BEL-657_AA-I_1p"
FT                 /translation="MRSWINRIDRLADITDESMTPPITRAAAKANAENPQR
FT                 TCQVCKQSIHAANMIACDRCNRWCHRACVGLAESLGGKWTCKDCIPTVSIS
FT                 GTSVSGRSSNSSRSTLFQLRLMRLEEEKKAQEEALAEKAALEKKYLDEKYA
FT                 LLLAEAEATGAESQRSRRSRRSRESQHDQVREWIQGVDEAAGGFSILENVE
FT                 EIFPPIPLASAMGAPRGMVTKYTGTVPKIPSTTTNEAMNAGDKFSSSKPST
FT                 EWAVGNVANVGVGSIAGIKDPITASTPIRAVDVVQQQTLPSSRCTQTFVQP
FT                 LRTEPVYAQSVITPVPSLQAAPGRSKLVPRPALPTFLFQQPLSMPTDRERV
FT                 SLPPISESPVSQLIPMQAAAETNIETSRSRSAQPQPLAQRTIVSSSPPQPS
FT                 HMLQSPLEHSSSPAEQRSMVQPTMISSFDQLSQFPHTHAFQKLGLYNETEK
FT                 RSNPPSVFRSSYTPQPPHPLVSEVLVRDIPEHHQFTQSSSHASLQQQPGPN
FT                 VSHLQQLQNQQAMWGQFQQQLSARQVVPKELPVFSGNPEEWPLFISSFRNS
FT                 TAMCGYSQAENLMRLQRCLKGKALEAVRSNLMLPSSVPKIMDTLETLFGSP
FT                 ERLVQSLLNKVRSVPTPKPERLEMLVNFGLVVQNLVGHLKAANQQAHLTNP
FT                 TMLQELVDKLPPHLRLDWALYKKAAGHVDLGTFCDYMSAITSAASDVAHFS
FT                 DFEGPRTGGNERPKKEKAFINAHVTSEPKKLEQQGKKVENKDRPCYICQSV
FT                 KHRIKDCNKFKSLPLGERLKAVETHQLCAICLVPHGRWSCKSTRTCGIGNC
FT                 DKRHHPSLHPSPPTTTKSTSSDNSGAPSKSDVIVNLHDRIQKATIFRIIPV
FT                 ILYGKQGRVSTFAFLDEGSSSTLIDAEIAALLNLEGESQSLSLTWTANVSR
FT                 HESNSRLVNLMISGEESNRIFPLTAVSTVSSLDLPIQTVDYGELSKRYPYL
FT                 AGLPVKSYKEAVPRILIGLDNLKLAVPLKVREGRLNGLVAAKTRLGWAVFG
FT                 SIDSSTGNVSSSAVLHINKSVEDSNMHELVKSYFATENLGVSATRELESEE
FT                 DRRAKEILQQTTVKRSDGHYETGLLWRYDLVELPSSYGMAERRLICLERKL
FT                 SKHATLRESLDKQIAEYQAKGYAHRITSQELEESDPHRTWYLPLGVVTNPR
FT                 KPGKVRIIWDAAAKANGVSLNDMLLKGPDLLTSLPAVLCRFRQRQVAIAGD
FT                 IREMYHQLKIRKEDRQVQRFLYRNDPSKKPDIFVMDVAIFGSTCSPCSANF
FT                 VKNTNAMEWQEELPEATAAVIENHYVDDYLDSRDTEEELAILASDVRKIQQ
FT                 NAGFELRNWRSNSLKVLQIIGESATETKKEFNADKATQVERVLGMAWVPEK
FT                 DFFMYSVKLPDNQEHAGPSKFTATKRSVLRFVMSVFDPLGLIAHLLVHGKM
FT                 IIQDLWRAQVGWDDTIPANIFENWERWIKQLSNLSEIRIPRCYFPGYDQDS
FT                 FRSLQLHIFVDASEFAFACVGYFRIIDRGQPRCALIASKAKVAPLKPLSVP
FT                 RLELQAAVIGSRLAKSIAENHTLPVSRRFFWSDSKTVLSWIASDARKYKQY
FT                 VAVRIGEILEDTQPEEWHWIPTKLNVADEATKWGKGPSCQSDNRWFTGPNF
FT                 LLLSENEWPQQQEPTVSTIEEIRTVHVHRVKFRDPCVEPHRFSKWERMLRS
FT                 TAYAFSFMDRYLIFGKRADKQVLKQEDLVRAERALWRIAQTDSYSEEIFIL
FT                 QKIKSAEGNPALKLDRSSPIRQLSPFIDDFGVLRIAGRTEASPLAAYDAKF
FT                 PVILPKDHRVTELLVDWYHRRFGHQCNETVVNEIRQRYHISTLRTVVRQVA
FT                 KRCQWCIVYKARPEVPRMAPLPEARVTPFVRPFSLVGIDYFGPYLIKIGRS
FT                 QVKRWVALFTCLVVRAVHLEVVASLSAESCKFALRRFIARRGAPTQIYSDH
FT                 GTNFVGASRELAAQIATMNRELSESFTDAKTRWFFIPPSSPHMGGAWERMV
FT                 RSVKAALEAVNCSRTPTEEIFQTILCDAESMVNSRPLTYMPLETSDQEALT
FT                 PNHFILLSSSGVKQPEKLPATEGEGLRNGWNLCRYILDQFWVRWIREYLPV
FT                 LTRRTKWHDEVKPIQEGDVVFIVGETTRNRWPRGKVINVIQGKDGRIRQAD
FT                 VQTGVGVLRRPVAKLAVVNVLPVSNPAGPEQNYGEG"
XX
SQ   Sequence 6515 BP; 1771 A; 1547 C; 1708 G; 1489 T; 0 other;
     tcctttaaag aaatctactc gatgcgaagc tggatcaata gaatcgacag acttgcggac        60
     attacggacg aatccatgac gcccccaatt acgcgagcag cggcgaaggc caatgcggag       120
     aaccctcagc gcacttgcca ggtgtgcaaa caatccattc acgcagcaaa catgatagct       180
     tgcgatcggt gcaatcgttg gtgtcatcgt gcgtgtgtgg ggctggctga gagtctcggt       240
     ggtaagtgga cgtgtaaaga ttgtatcccg acggtgtcca taagtggtac ttcggtgtct       300
     gggagatcca gtaactcttc gcggtcgacg ctgtttcaac ttcgactcat gcggttggag       360
     gaagaaaaga aggcacagga ggaggccctg gctgagaaag ctgcccttga aaagaaatac       420
     ctcgacgaaa aatatgctct actgttggct gaggcggagg ccacaggagc agaaagtcag       480
     cggagtcgtc gaagtcgtcg tagtcgagaa agtcaacacg atcaggttcg ggaatggatt       540
     cagggagtag atgaagctgc tgggggattt tcgattctcg aaaatgtcga ggaaatattc       600
     ccgccgattc cgctcgccag tgccatgggt gcgccaagag gaatggtgac gaaatacacc       660
     ggaacagtgc caaaaatccc atctactacg acgaacgaag caatgaacgc tggagataag       720
     ttttcttcat cgaaaccttc gactgaatgg gcggttggca acgttgctaa tgtaggtgta       780
     ggttctattg ctggtataaa ggacccgatc actgcatcca ctccgattcg agcggttgac       840
     gtggttcaac agcaaacttt acccagctcg cgatgtacac aaacgttcgt acagccgttg       900
     cgaacggagc cagtgtacgc acagtcggtg attacccctg taccgtccct gcaggccgcc       960
     cctggaagat cgaaattagt accacgaccg gctctaccta cctttctttt ccagcaacct      1020
     ctatcaatgc caactgatcg agagagagta tctcttccac caataagtga gtcaccggtg      1080
     tcacagttga tccccatgca ggctgctgca gaaacgaata tcgaaacgtc tcgctcgcgt      1140
     tcagcacagc cacaaccact agctcagcga actatagtgt cgtcgtctcc accacaacca      1200
     tcccatatgt tgcagtcgcc gttggaacat tcaagcagtc cggctgaaca gagatcgatg      1260
     gtccaaccaa cgatgatatc gtcgttcgat cagttgtctc agtttccaca cacccatgca      1320
     ttccagaaat tgggtctgta taatgaaaca gagaaacgat cgaatcctcc atctgtattt      1380
     cgctcatcat ataccccgca accaccgcac ccactcgttt cggaggtctt agtgcgtgat      1440
     ataccggaac accaccagtt tacacagtcg tcgtcacatg catcgctaca gcaacagcct      1500
     gggccaaacg ttagccatct gcagcaattg caaaaccaac aggcaatgtg ggggcaattc      1560
     caacagcaat tgtctgccag gcaggtggtg cctaaggaac ttcctgtatt ctcaggaaat      1620
     cccgaggaat ggcctctttt tataagcagc tttcgcaact caactgccat gtgtggctac      1680
     tcacaagcgg aaaatttgat gcgattgcag cgttgcctca aaggcaaagc actggaagca      1740
     gtcaggagta acctgatgct accttcatcg gtgccgaaaa ttatggatac gctagaaacg      1800
     ttattcggta gcccagagcg actagtacag tcgctgctta ataaagtgcg aagtgttccc      1860
     acgccgaagc cggaaaggct cgaaatgctg gtgaatttcg gcctcgttgt ccaaaatctt      1920
     gttgggcatc tcaaggccgc caaccaacaa gcccacttga ctaatcccac tatgctgcaa      1980
     gagttagtgg ataaattgcc accacacctc cggctagatt gggctttgta taaaaaagcg      2040
     gctggacatg tggatttggg tacattctgc gactacatga gtgccattac gtcggcggcg      2100
     agtgacgtag cgcatttcag cgacttcgaa ggacctcgaa caggcggaaa tgaaaggcca      2160
     aagaaggaaa aggcgttcat caatgctcac gtgacttccg agcccaagaa gttggagcag      2220
     cagggaaaga aggttgaaaa caaagacagg ccgtgctata tttgccaaag cgtaaagcac      2280
     agaatcaagg actgcaacaa attcaagtcc ttgccactcg gcgagcgtct gaaagcggta      2340
     gagacacacc aactgtgtgc gatctgtctg gtgcctcacg gacggtggtc ttgcaagtcc      2400
     acacggacct gtggaatcgg gaactgtgac aagaggcatc atccgtcact gcatcccagc      2460
     ccaccgacta ctaccaaatc aacttcttct gataactccg gggcaccgtc aaaatccgat      2520
     gtcatcgtta atctgcacga ccgaatccag aaagctacga ttttccgtat aatcccagtg      2580
     attttgtacg gcaagcaggg aagagtatct acctttgcct ttcttgacga agggtcttcg      2640
     tcgacactga ttgacgccga aattgctgca ctattgaatc ttgaaggaga atctcagtca      2700
     ctgtcgctga catggacagc gaatgtttct cgacacgaat cgaattctcg gctggtcaat      2760
     ctgatgatct ctggggaaga aagcaaccga attttcccgt tgacggctgt gagtaccgtg      2820
     agcagtttag atcttcctat acagacggtg gactatggtg aattgtccaa gcgatacccg      2880
     tatttagctg gtctacctgt gaagagctac aaagaagccg ttccgagaat cctgattgga      2940
     ctggacaatt tgaaactcgc ggtacctctc aaggtacgtg aaggccgact gaatgggctg      3000
     gtagcagcca aaacaagact gggatgggct gttttcggaa gcatcgatag ctcaacagga      3060
     aatgtgagtt cctcggcagt tttgcacatc aacaagagcg tggaggatag taacatgcac      3120
     gagcttgtca aaagttactt tgcgacggaa aatcttggcg tttctgcaac acgtgaactg      3180
     gaatccgaag aagatcgacg agcgaaagaa attttgcaac aaacgactgt gaagcggagt      3240
     gacggccact atgagacagg actgttgtgg cggtacgatt tggtggaact accatcaagc      3300
     tacggtatgg cggaacgtcg tttgatttgt ctcgaacgga agctaagcaa acacgccaca      3360
     ttgcgcgaga gtttggacaa acaaattgcc gagtaccagg ccaaaggcta tgctcatagg      3420
     ataacgtcgc aggagctcga agaaagtgat ccacatcgaa cctggtacct ccctcttggc      3480
     gtcgtaacaa atccgcgcaa acctggaaaa gtgcgcatca tctgggacgc ggctgccaag      3540
     gcgaacggag tttcgctcaa tgacatgctg ttaaagggcc cagaccttct tacatcgttg      3600
     ccagcagtat tgtgtcgctt tcgacagcgg caggtggcga tcgcaggaga catccgtgaa      3660
     atgtaccatc agctgaagat taggaaagaa gatcgtcagg tacaacgttt tctctacagg      3720
     aacgacccgt ctaaaaagcc ggatatattt gtgatggacg tggccatctt tggatccaca      3780
     tgttcgcctt gttcggcaaa tttcgtaaaa aatacgaacg cgatggagtg gcaagaagaa      3840
     ctaccagaag caacagcagc agtaatagaa aatcactatg ttgatgacta tttggacagt      3900
     cgagatacgg aagaagaatt ggcaatactg gcgtctgatg tacggaagat tcagcagaat      3960
     gcaggctttg agctacgtaa ctggcgttca aactcgctga aggtgctgca gatcatcgga      4020
     gaaagcgcaa cagaaacgaa gaaggagttc aacgctgaca aagcaactca agtggagcgt      4080
     gttcttggca tggcctgggt accggagaaa gacttcttca tgtactccgt caagttaccg      4140
     gacaatcagg aacatgcagg accatcaaag ttcactgcaa cgaagagaag cgtcctgagg      4200
     ttcgtgatga gcgtttttga cccgctcggg ttgatagcgc atttactggt gcacggtaag      4260
     atgatcatac aagacctgtg gagggctcaa gtgggttggg atgatacgat tccagcgaac      4320
     attttcgaga actgggaacg atggatcaag cagctttcca atctgagtga aatacgtatt      4380
     ccacgttgtt attttcccgg atatgatcag gacagcttca gatcattgca actgcacata      4440
     tttgtagacg caagtgagtt tgcattcgct tgtgttggct atttccgaat aattgatcgt      4500
     ggtcaaccac gatgtgcatt gatagcctca aaggccaaag tggctccact gaagccgctg      4560
     tcagtcccta gattagagct acaagcggcc gttatcggga gccgattagc gaaatccatc      4620
     gccgagaacc acacccttcc tgtaagtcgc agattctttt ggagcgactc taaaactgtc      4680
     ctttcctgga tcgcctcaga cgctagaaag tacaaacagt atgtagcagt acgaattggt      4740
     gagattctgg aagatacgca gcctgaggag tggcactgga tacccaccaa actcaatgtc      4800
     gcggacgagg ccacgaaatg gggaaaaggt ccctcctgcc aatcggacaa ccggtggttc      4860
     acaggaccaa atttcctttt gttgtcagag aatgagtggc cccagcagca ggaacctaca      4920
     gtgagcacca tcgaagaaat acgaactgtg cacgtgcatc gagtgaagtt tcgggaccca      4980
     tgcgtcgagc cgcatcggtt ctccaagtgg gaacgaatgc tcagaagtac ggcatacgcc      5040
     ttttcgttca tggatcgcta tttgatcttc ggcaaacgag cggataaaca agtgctgaag      5100
     caggaggatc tggttcgcgc agagagggct ctgtggcgaa tcgctcagac ggattcatac      5160
     tccgaggaga ttttcattct acagaaaatc aaaagtgcag aaggaaatcc ggcattgaaa      5220
     cttgatagaa gcagtccaat caggcaacta tcaccattca tagacgactt tggcgttctt      5280
     cgtatagcag gtcgaacaga agcttccccg ttggctgcat atgatgcgaa attcccagta      5340
     atcctgccga aagatcatcg tgtcaccgag cttctagttg actggtatca cagacggttt      5400
     gggcatcagt gcaatgagac tgtagttaac gaaatccgtc aacggtatca catttcaact      5460
     cttcggacgg tggtgcgcca agtagcaaaa cggtgtcaat ggtgcatcgt gtacaaggcg      5520
     cgtcctgaag tgcctaggat ggcgcctcta ccggaagcac gtgtaacccc gtttgtccga      5580
     ccattttcgc tggttggaat cgattatttc ggcccgtatt tgataaagat cgggcgtagt      5640
     caagtgaagc gttgggtagc gctctttact tgcttggtcg tcagagcggt tcatttggaa      5700
     gttgtcgcat ctctttcagc ggaatcctgt aaattcgctc tgcgccgatt catcgcgcgc      5760
     cgaggtgccc caacacaaat ttactccgat cacggaacga attttgtagg ggctagcaga      5820
     gagttggctg ctcaaattgc tacaatgaat cgagaattgt cggagagctt caccgacgcc      5880
     aaaactcgtt ggttcttcat cccaccatcc tccccgcaca tgggaggtgc gtgggaaaga      5940
     atggtaagat ctgtgaaagc agctttggag gcagttaact gttctcgcac gccgacagaa      6000
     gaaattttcc aaaccattct gtgtgacgca gagtcaatgg tcaactccag accgttgacg      6060
     tatatgccgc tggaaacgtc ggatcaggag gccttgactc cgaatcattt tatcctgctt      6120
     agttccagtg gggtcaaaca accggagaaa ctaccagcca cggagggtga aggactacga      6180
     aatggctgga acttgtgccg atatattctg gatcagtttt gggtgagatg gatccgagaa      6240
     tatcttcccg tcttgactcg gagaaccaaa tggcacgacg aggtgaaacc cattcaagaa      6300
     ggagatgttg tgttcatcgt gggggagaca acgaggaatc gatggcctcg gggtaaggtg      6360
     attaacgtca ttcaaggaaa agatggtcga atacggcaag cggatgttca gactggagtt      6420
     ggtgttctac gtcgtcctgt ggcgaaactc gccgtggtca atgttcttcc ggtaagtaat      6480
     cctgctggac ctgagcagaa ttacggagag gggga                                 6515
//
ID   BEL-657_AA-LTR repbase;    DNA;    INV; 714 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-657_AA-I;
KW   BEL-657_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-714
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-714
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 56-56 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 714 BP; 246 A; 123 C; 131 G; 214 T; 0 other;
     tgtaccgggg ggcgttacac ccgtcgaagc tgcggcagaa atacccacag ggatgctgaa        60
     aatctgacgg acagcttgtc atctttttgc tctgatgaag taggtaccga agtacaaaag       120
     aaaacaacac gatgagattg tttccgaaaa tcatgtagtg tgaccgatga gagaaatggt       180
     aacaagttta atcgtcagcc tatgagttta ggagtttata ctcgaattgt ttccctgcgc       240
     taatacgtaa tttgtgtgtt gcgattgagc ttcaattata tcgtgagtca aatgttaaaa       300
     ataatacaca aaaattaaat tacactaaat tatactcata caaacatttt aggttagctt       360
     ccatgcattc catactctta aactaaatga attaaaccta aatttcttaa atttgaattg       420
     aattctacaa ttacaaactg tgagtaaact tatgactatg ttttttgact tatgactaag       480
     aaaattgtac ttaaaacagt tagatcgact agagacaaat atcacaggac ggttgtaatg       540
     acgtaagaga agttgactag gagtcacaga tttgtaagta tttgacacct tcgaacccag       600
     aaccataagc aataacaatt gtataatact tttagcttta aagctctatc atgaataaaa       660
     tgaactgcta cgagagccgt gatttcttga tctacgttat gacccgtgcc taca             714
//
ID   BEL-658_AA-I repbase;    DNA;    INV; 6266 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-658_;
KW   BEL-658_AA-I; BEL-658_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6266
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6266
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..6263
FT                 /product="BEL-658_AA-I_1p"
FT                 /translation="MSRSTKSSRRAKNHCQECDAADSERMVSCCHCGSWWH
FT                 FECVGVNDSIADPDRVFSCPQCQKPSVHVPVDNVASRKVGSVSSTCSSRAM
FT                 RARLELEKLEAQKALAVKRLELKRREQERKHKEAELRFQQKKPEDEAALEQ
FT                 LELQLEETVINESFRLRDIIAQEAGDDDDHRSVESVQSSSSKVRRWRALNS
FT                 TTAASTEQAPIDPTNNETSKVTTTPARQDGRMQPTSSQEGFKATTGIVLGQ
FT                 SVMEPTLGGLIGRTESTILSNSVNLSQAPPAFPGSSVTSLKTTLEQLNHNI
FT                 THVPPVSNANVRFPLARSTINVQPCSKNPCSQAHAQSSRLNEVNQNSVDRN
FT                 SGPLTVADLLGGFHPRQSLPSQFERAQVGDPMTAPSGALLNGRHPEEHPSQ
FT                 ERFSSTARPVYYGPTPQQLAARHVMAKELPTFSGNPEDWPLFISAYANSTE
FT                 ACGFSDSENLARLQRCLKGHALETVRSRLLLPASVPHVLTTLETLYGRPEL
FT                 LIHALLQKIRGVPAPKQDRLDTLIGFGMAVQNLSDHLEAGRHEAHLNNPML
FT                 LFELVEKLPAHMKLDWSLYKQRCGEVNIRAFAHYMQTLVRAATDVTLQYDP
FT                 KQQLRLPKEMSGKNKNFCGAHTAEESSQALSEKPTSGEVKRSQTPACLICK
FT                 NPEHRVKACLEEFVSFDERWKTVQQLNLCRLCLGAHGRRPCKSRIQCGIDG
FT                 CQRRHHPMLHSERDTFDTKRNLDGDRQRKRDSRSTGDDVKTDSSREFQEPK
FT                 PSGSKVATNYHFSGKTTLFRIIPVTLHGNNRSVSVYAFLDDGSEKTLVEEE
FT                 IVKQLGVDGEIQPLCLQWTANVKRTEADSQRVNLEIAGRASASKHSLSDVR
FT                 TVSKLDLPRQSLRYAELSEAFPYLKGLPIDNYENAQPRILIGNDNAHVTST
FT                 LKLRDGQPGEPIAAKSRLGWTVYGSSQDKSVEKAHTFHICECQEGDTTLNE
FT                 LVERFFTVESLGVAQVAPTESEEVKRSNAILRETTKRVGLRFETGLLWKYD
FT                 HFEFPDSYGMAVRRLQCLERRMQSDSVIGESVTRQIAEYQAKGYIHKASQA
FT                 ELDEADPRRTWYLPLGVVINPKKPSKIRIFCDAAAKVDGISLNTMLLKGPD
FT                 LLRTLLDVLFGFREKRIALCADLKEMFHQIQIRREDRHAQRLLWREDPNKT
FT                 PDIYLMDVATFGASCSPCSAQYVKNLNAEQHSTEYPVAADAIIRKHYVDDY
FT                 LDSADNVEEAVKLAREVKHVHSQGGFYLRNWLSNSEEVLSQVGESDSATEK
FT                 CLQLDRNISTERVLGMFWRPEEDVFTFSTTLATEAKHPTKRQALRVVMSPF
FT                 DPAGLLCLFLIHGKILIQDLWRAKTDWDELIPDKSLEKWLRWTDSFHQLDQ
FT                 IRIPRCYFAQHSTKDIVSLQLHVYVDASEEAYACVGYLRAVFPEEIKVALV
FT                 GAKSKVAPLKAHSIPRLELMAAVIGVRLAKSICNGHTLRIDKVFFWSDSKT
FT                 VLAWINSDHRNYRQFVACRVGEILSKSKAEEWHWIPSKKNVADEATKWGRG
FT                 PCLSSNSRWFRGEDDLYLPEESWTTSVYPAGERTNEELRSSMMHHEVKLPQ
FT                 LVKWDRFSNWTRLYRTVAYVHRYVRNLLRKTKKEERLVGPFTREEMGKAET
FT                 TIFRWIQNERYPDEVTTLISVKGKQSNQQLRLEKTSTIRKLSPFMDEADVI
FT                 RSDSRIAAAKFVSYDTRFPVILPKGHQATWLLVKWFHEKYLHANGETVVNE
FT                 IRQRFHISQLRSFVRKVSKECMLCKVKKSVPAIPRMAPLPAARLQAHVRPF
FT                 SYIGIDYFGPIAVRVNRCTAKRWIALFTCLTTRAIHLEVVHALSTESCKMA
FT                 IRRFIGRRGAPVEIRSDRGTNFVGASNELKQEMATIENQLAETFTNTHTDW
FT                 VFNPPGAPHMGGAWERLVRSVKTALAAIDCPRTPSEETLATVLVEAESVVN
FT                 SRPLTYIPLETDQQEALTPNHFLLLSSSGVSQTPKTLANPKQAGRNDWNLC
FT                 RIMVDQFWRRWVREYLPTIQRRTKWFDEVKPIEVGDLVIIVEEKIRNGWIR
FT                 GRVAEVVVGRDGRVRDAIVQTAEGMIHRPVTKLARLDVAVSKAGPELSDQP
FT                 YGSG"
XX
SQ   Sequence 6266 BP; 1780 A; 1427 C; 1657 G; 1402 T; 0 other;
     attctaaaag atcgcgcaag atgtcgagaa gtacgaaaag ctcacgaagg gcaaagaacc        60
     actgtcagga atgtgatgcg gccgacagcg aacggatggt tagttgctgc cactgtggtt       120
     catggtggca tttcgaatgc gtgggcgtga acgacagcat tgctgatccc gatagagtat       180
     tcagttgtcc gcaatgccag aagccgtctg tccacgtacc agtggacaac gtagctagtc       240
     ggaaggttgg aagcgtgagt tctacatgtt ccagcagggc gatgagagcg cgcttagagc       300
     tggagaaact cgaggctcaa aaagctctcg ctgtgaagcg cttggaactg aaacgacgtg       360
     agcaagagcg caagcataaa gaagcggagt tacgatttca gcagaagaag ccggaagatg       420
     aggcggccct ggagcaactt gaactgcagc ttgaagaaac cgtgataaac gaatcttttc       480
     gtctgcggga tataatcgca caggaggccg gggacgatga cgatcacagg agcgtagaat       540
     cggtgcaaag ttcatctagc aaagttcgac gatggagagc gttaaattca acgacagcag       600
     cctcgacgga gcaagccccg attgacccga caaacaacga aacgtcgaaa gttaccacaa       660
     caccagctag gcaggacggc aggatgcaac caactagcag tcaggaaggt ttcaaagcga       720
     cgacaggtat tgtgttaggg caatcagtta tggagccaac gttaggaggt ctcatcggac       780
     gtacagaaag caccattcta tccaactctg tgaatctctc tcaggctccc cccgctttcc       840
     cagggtcaag tgttactagt cttaaaacca ctctagagca gttgaatcat aatattaccc       900
     atgttccccc cgtctcaaac gctaatgtac gctttcccct cgcacggtct accataaacg       960
     ttcagccgtg cagcaagaat ccgtgttctc aagctcacgc gcaatcatct cggttgaacg      1020
     aagtgaatca aaacagtgtt gatagaaata gtggaccact gactgtggca gatctactcg      1080
     gaggatttca tccaaggcaa tcgttaccat cccaattcga gcgagcgcag gtaggggacc      1140
     caatgacggc accgagtggt gcgttgttaa atggacgtca tccagaagag catccatcac      1200
     aggaacgatt ctcatcaact gcaaggccag tttactacgg accgacacct caacagttgg      1260
     ccgctagaca cgtgatggcc aaggagctgc cgacattttc cggtaatccg gaggattggc      1320
     cgctgttcat cagcgcttat gcgaactcta cggaagcgtg tggattttca gactcggaga      1380
     atctggcaag attgcaacgc tgcctaaaag gacatgccct cgaaacggtc cggagtcgac      1440
     tgctcctacc ggcgagcgtt ccacacgttc tcaccacttt ggaaacgctg tatggtaggc      1500
     cggagctgtt gatccacgcg ttacttcaga agatcagagg agttccagcg ccaaaacaag      1560
     acagattgga tacactgatc ggattcggca tggctgtaca aaatctcagc gaccatttag      1620
     aagccggaag acacgaagca catctcaaca atccgatgtt actattcgag ttggtagaga      1680
     agcttccggc tcacatgaaa ctagattggt cgctatataa gcaacgctgc ggtgaagtga      1740
     atattcgtgc attcgcccat tatatgcaga cgttggtgcg agcagcaacc gatgttacat      1800
     tgcaatacga cccaaaacaa cagttgcgac taccgaaaga aatgagcggc aaaaataaga      1860
     atttttgcgg agctcacacg gcagaggaat cgtcacaagc tttgtcggaa aagccgactt      1920
     caggagaggt gaagcgctca caaactccgg cttgcttaat ctgcaaaaac ccggaacacc      1980
     gcgttaaggc atgtttagag gaatttgttt cgttcgacga acgctggaag acggtacaac      2040
     aacttaactt gtgtcgactt tgccttggtg cccatggaag gagaccctgc aagagccgaa      2100
     tacaatgtgg tattgacgga tgccagcgac gccaccatcc gatgctgcat tctgagcgtg      2160
     acaccttcga caccaagcga aacctagacg gcgacaggca acgtaaacgt gacagcaggt      2220
     cgacagggga tgacgtgaaa accgatagtt cgcgagaatt ccaagaaccg aagccaagtg      2280
     ggtctaaagt tgccacaaac taccattttt ccggtaagac tacactgttt cggataattc      2340
     cagtcacttt gcatggtaat aatcgatccg tatccgtgta cgcatttttg gacgacggtt      2400
     cggagaaaac actagtagag gaagaaatag tgaagcagct aggcgttgac ggagaaatac      2460
     aaccattgtg tcttcagtgg acagcgaacg tgaagagaac ggaagcagat tcacagcgag      2520
     ttaatctgga gatcgcagga cgggcaagcg catctaagca ttctttgtca gacgtgcgca      2580
     cggtgagcaa acttgatttg ccgaggcagt ctttacgata tgcagagtta tcggaagcgt      2640
     tcccatacct taaagggcta ccgatagata attatgaaaa tgctcagccc cgaattctaa      2700
     ttggaaatga taacgcccac gttacatcaa ctctaaaatt acgtgatggt cagccaggag      2760
     agccaattgc agcgaaatca cgattggggt ggacagttta cggctccagc caagacaaat      2820
     ccgtggagaa agcccatact tttcacattt gtgagtgtca agagggtgat acgactttga      2880
     atgagctcgt tgagcggttt ttcacagtag aaagcctagg agttgcgcag gttgcgccta      2940
     ccgaatccga ggaagtcaag cgctcaaatg caattttgag ggaaactacg aaacgggttg      3000
     ggctgcgctt cgagacgggt cttctctgga agtacgacca cttcgaattc ccggacagct      3060
     acggtatggc cgtacgaagg ctacagtgtt tggagagacg tatgcaaagc gattcggtca      3120
     ttggagagag cgttacaagg cagatagccg agtatcaggc aaaagggtat atccacaagg      3180
     ctagccaagc ggaactcgat gaggcggatc ccaggcgcac ttggtatttg ccgctagggg      3240
     tagtcattaa tcctaagaaa ccgtccaaaa ttaggatttt ctgcgatgct gctgccaagg      3300
     tagatggaat ctccctcaac acgatgttgc tgaaagggcc agatcttttg aggacgttgc      3360
     tggatgtact cttcggattc cgcgagaagc gcattgctct gtgtgcagat cttaaagaaa      3420
     tgtttcacca gattcagatt cggcgggaag atcggcatgc gcaacgatta ctttggcgtg      3480
     aagaccccaa caaaacacca gacatttatt tgatggacgt ggcgacgttt ggggcatcgt      3540
     gctcgccgtg ttcggcgcaa tatgtaaaaa atttgaacgc cgaacaacat tccacagaat      3600
     atccggtcgc agcagacgct atcattcgga aacattatgt ggacgattac ttggacagtg      3660
     ctgacaacgt agaagaagcc gtgaagctcg cacgcgaagt gaaacacgtt cactctcaag      3720
     gtgggtttta tcttcggaac tggctgtcca actccgaaga agtcctctca caggtcgggg      3780
     aaagcgactc agccacagaa aaatgtcttc agttggatag aaatatctca acggaacgag      3840
     tgttgggaat gttctggaga cccgaagaag acgtattcac gttttccacc actttagcaa      3900
     cagaagcgaa gcacccaact aaacgacaag cgttacgggt ggtcatgagc ccatttgatc      3960
     cggctggatt gttatgcctc ttcctaattc atggcaagat acttattcag gatctatggc      4020
     gggcgaagac cgattgggat gaattaatcc cagataaatc actcgagaaa tggttgcggt      4080
     ggactgattc gtttcaccag ttggaccaga ttagaatccc acgctgttat ttcgctcaac      4140
     attcgacaaa agacatcgta tcgttgcagt tgcatgtcta cgtggatgca agcgaagaag      4200
     cgtacgcttg tgtcggatat ttacgtgcag tattccccga agagattaaa gtagcgctag      4260
     ttggagcaaa atcaaaggtg gctccattaa aggcgcactc gattccgcgc ctggaactga      4320
     tggccgcagt cattggtgtc cgtttggcca aatccatttg caatgggcac acattgagaa      4380
     tcgacaaggt ttttttctgg agcgactcga agaccgtgtt ggcgtggata aactctgacc      4440
     atcgtaatta ccggcagttc gtcgcttgca gagttggaga gattttatcc aaatcgaaag      4500
     ctgaggaatg gcattggata ccctcaaaga agaatgttgc agacgaagcg accaagtggg      4560
     gcaggggtcc ctgtctatcc tcaaatagtc gttggtttcg aggcgaagac gatctttatc      4620
     taccggaaga atcttggaca acgagtgtat atccagctgg cgagagaaca aatgaagagc      4680
     tcagatctag tatgatgcat cacgaagtaa aattgccaca acttgtgaaa tgggaccgat      4740
     tttcaaattg gactcgcttg taccgaacag tcgcgtacgt tcaccgctac gtgcgaaatt      4800
     tgttgcgcaa aacaaagaaa gaggaacgac tagttggacc gttcacacga gaggaaatgg      4860
     gtaaggctga aacaacgatt ttccgttgga ttcaaaatga acgatatcct gatgaagtga      4920
     cgaccttaat cagtgtcaaa ggcaaacaat caaatcaaca attgcggctg gaaaagacca      4980
     gtacaattcg aaagttatca ccgttcatgg acgaagctga cgtgattcgt tcagatagca      5040
     ggatcgctgc cgcaaaattt gtctcatatg acacaaggtt tcctgtaatt ttacctaagg      5100
     gtcatcaggc gacatggctg ctggtaaaat ggtttcacga aaaatatctc cacgcgaatg      5160
     gcgagacagt tgtaaatgag ataagacagc ggttccacat ctctcagcta cgatcgtttg      5220
     tgcgcaaagt ctccaaggag tgcatgctgt gtaaggtgaa gaagtcggtt cctgcgatac      5280
     ctagaatggc tccacttcct gcggccaggc ttcaagcaca cgtgcgtcct ttttcataca      5340
     tcggcatcga ttactttggt cctatcgccg tgcgagtgaa ccgttgtact gctaaacggt      5400
     ggattgcact gttcacgtgt ttgaccacca gagcaataca ccttgaagtc gtccatgcac      5460
     tttctacaga atcatgtaag atggctatca gacgttttat cggacgcaga ggagctcccg      5520
     ttgaaattcg tagcgatagg ggaaccaatt ttgtgggtgc aagcaacgaa ttgaagcagg      5580
     agatggcaac gattgaaaac cagttagcag aaacctttac caatacacat acggattggg      5640
     tatttaaccc cccaggagca cctcacatgg gaggagcctg ggaaaggctt gttcggtcgg      5700
     tgaagactgc gctagccgcg atagattgtc ctcggactcc gagcgaggaa actctagcaa      5760
     cagtactagt ggaggcggag agtgtagtga attcgaggcc cttaacttac attcctctgg      5820
     agacggatca acaggaagct ctgacgccga accactttct actgctcagt tcaagtggtg      5880
     tgtcgcaaac cccgaagaca ttggcgaatc ccaagcaagc aggcaggaat gattggaatt      5940
     tatgccgaat aatggtcgac cagttttggc gccgatgggt acgcgaatat ctcccgacca      6000
     tccaacgtcg cacaaaatgg ttcgacgagg tgaagccaat cgaggtcgga gacttagtta      6060
     taatagtcga agagaagata cgcaatgggt ggattcgagg tcgagtagcc gaggtcgtcg      6120
     tgggacgtga tggacgagtc cgtgatgcga tagtgcagac agctgaaggc atgattcatc      6180
     gaccagtgac gaagttggcc agattggatg tagcagttag taaagctgga ccggagctat      6240
     ctgaccagcc ttacgggtcg gggaac                                           6266
//
ID   BEL-658_AA-LTR repbase;    DNA;    INV; 604 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-658_AA-I;
KW   BEL-658_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-604
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-604
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 64-64 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 604 BP; 197 A; 110 C; 118 G; 179 T; 0 other;
     tgttacgggg tttcgcgcca accccttcaa actactccgg cgttgaaata cccctcggaa        60
     gaatgactct gtatgacaac tgaagttgtc atcgagagca tagcgatagg tgtcaaaaga       120
     cttaaatagg gaaaagatat attgatctat caagtgtact gaatttaaag tccgtgaaat       180
     tattgaattt tcatctgcta gttttggatt ataaatagta agtttattat aaataatatg       240
     aattcttccg taatgatgct aatgtccctc gattaggtgg cagagagaca gaagattatc       300
     ccgtcgtttg aggatcaatt accagtagag gttattggag agtgagtcgg ctgaattcaa       360
     tgaaagataa tgaattatgt aaccaataat acttcccttt agctcagtcc atcacacatt       420
     actgctcgtg gtagcttgtt gggtttattg aaagggatta agagagaccg atgtaagtaa       480
     tcacaatgta ccataaattt atacatctat taataaacct aatacagctt ttagctcaca       540
     cacgttaaac ccacgaacga aggtgtttgc ttaaaaggct tttcgaaacc cccatcaccc       600
     aaca                                                                    604
//
ID   BEL-659_AA-I repbase;    DNA;    INV; 6329 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-659_;
KW   BEL-659_AA-I; BEL-659_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6329
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6329
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..6303
FT                 /product="BEL-659_AA-I_1p"
FT                 /translation="MSGKNSRVSVPTSPQGCKGCDRPIHVDNMVACDQCSN
FT                 WWHFDCAGVQASVSERYWICMNCAESRKSLRSFRSTSSNARLRLRQLAEAK
FT                 ALEDNIQMEKAERDRAYLAQKHQLEAEIDSEGTETCSSKSSGTSHGRRESL
FT                 QDWITEQNHSLEAAVSDLAFTESRPSAKPALVINTGTIPKTVSGNLQTTPI
FT                 FTSTAELPIFHRSATAPTAIELHGSMRDKQLPKDSVRTSMYEDMMSQHQIP
FT                 SKHSIRGQQSRIPISSSIGQTIPLAPPTNTIGVLEPTGLENLMTNQDLPTV
FT                 APLRRMESNRSLCEENQHGLTYIPSTSHQLEQSIYTFERAVTQNQRSTPQP
FT                 APRHQYAIDREVYTQHRPQHGGVQFLSANSPAPRNERDGHNVSSRYLNNSD
FT                 ADDQIIRSPLLSASHHTTPSNPHQHAVEQLCSSQRVSHPHSYQQSVYQQNQ
FT                 SVQPSHPLESVAMISSQQLAARQVVPRELPKFSGDPLEWPMFLQAFETTTQ
FT                 LCGIQPDENLARLQKSLIGCAREKVQSILTLPAAVPDIIATLRDECGRPDQ
FT                 LVHRLMMKVRNAPHPNINKLDTLITFGREVGNLVTFIEAANLQAHLSNPML
FT                 LTELVSKLPPNLRLDWGLRSRSTGDVSLKAFSDFVSAIRSAACHVSLPSET
FT                 FQTEDVQTRKRDKQSFINAHISEESESTKPMNFPNLDVKPCPKCNQIGHKL
FT                 RDCDKFKGSTVQERRKLVDQYSLCMRCLVGHGKWPCRTKQPCGLNGCCEMH
FT                 HRLLHTDCIMQKEGASSSSALVSTHHCLLQSTYFKILPATLHVAGKTVMTY
FT                 AFLDDGSSHTLLDQDLADELGLDGEAVPLCLQWTGNVTRKESNSRRVSLGI
FT                 SNVNGGAQYDMFDVRTVKKLDLPRQTMDYRQLSCQFPYLQGLPIGSYRDAV
FT                 PRILIGANNANLILTLDRRERRVGEPVATKTRLGWTVFGGMRNTAERANLM
FT                 VHVCGCSKDDTLHELVKEYFTMDNIGINGSTLESFEDQRARKILQDTTKRT
FT                 SSGKFETGLLWRSDDIDMPNSFPMAAKRLTCLERKLHKEPELKKKVDELIS
FT                 EYLQLGYAHVATDEELRLSDPKRTWYLPLGVVRNPRKPDKVRVVWDAAATL
FT                 NGVSLNSLLLPGPDLLTPLLTVLCQFLQRQYAVSADIRQMFHQIIIRQEDR
FT                 QVQRFLYRYSPQSNPTVYVLDVATFGATCSPCSAQYAKNLNASEYSSSFPE
FT                 AAEAVIKNIYVDDYLDSRDTIEEAVQLSLDVREINLKAGFDLRNWQSNSTE
FT                 ILRRVGGNYHAAEKSFAAEKATPMERVLGISWMTENDVFVFSAQFRQDLTP
FT                 ILSNGIVPTKRQVLSVVMSYFDPLGIITNYTIHGRILLQDIWRSNVKWDDP
FT                 ITDRDFSNWQRWILQAPLLNKVMIPRCYFPNYDTNSYDSLQLHVFVDAGDQ
FT                 AYGAVAYFRIVDRGTPRCALVSAKAKVTPLKPLSIPRCELNAAVIGVRLMK
FT                 TIENSHSLKIKKRFLWTDSTTVLSWLHADPRKYKQYVALRVSEILSESEVN
FT                 EWYWIATSKNIADKTTKWGTGPDFEPESDWYRGPSFLLQYETEWIIKRPGI
FT                 LDPPEELKVANIHNVISFEPIVDFTKFSELKALIKRLAYLHHFGRCCRLKS
FT                 RYPSAESKVLLSQEDFEAAERSMWRIIQLQEYSNEISVLKRNATLPTNEQI
FT                 RLEKSSSLSKLSLFLDDDEILRVQTRIDPEAAYYAFNFRNPIVLPKHNHVT
FT                 ELLVLQYHQQFGHANVEIVVNELRQRYYIPRLRTVVKKMVRRCMWCRVYRA
FT                 VPRTPKMAALPQPRVQPYVRPFSFIGLDYFGPMIIKRGRTNVKRWVALFTC
FT                 LTVRAVHLEVVHSLSSDSCKMAIRRFIARRGSPREIFSDNGTNFRGAAREL
FT                 AEEIKNINIKIASTFTNADTKWTFTPPSAPHMGGVWERKVRSIKEAFKSLC
FT                 HRDKLDDEGFATFLMEAEMIVNSHPLTFVPLDEPNQEVLTPNSFLLLDSSG
FT                 SNNAPKMPINDSVTLKLNWKLLNYLLNQFWRTWIKAYLPTIAHRTKWLTEV
FT                 RPLQVGDLVVIVDEGVRNGWLRGRIVRTYPATDGQVRKVDVKTDSGILQRA
FT                 ATKVAMLDIQEDSKTN"
XX
SQ   Sequence 6329 BP; 1862 A; 1408 C; 1447 G; 1612 T; 0 other;
     atctcgaaaa ttgtggcgca caagatgagc ggaaaaaact ctagggtatc cgtgccgaca        60
     tcgccacaag gctgtaaagg atgtgatcgc cccattcatg tagacaacat ggtggcttgc       120
     gaccagtgca gtaattggtg gcatttcgat tgtgctggag tacaagcatc ggtaagcgag       180
     agatactgga tttgtatgaa ttgtgccgag agtcgcaaat cgctccggtc attcaggtca       240
     actagctcta atgctcgttt acgattgcgt caacttgctg aagcaaaggc tttagaggac       300
     aacattcaaa tggagaaggc tgaaagagat cgtgcttacc ttgcacaaaa gcatcaactg       360
     gaagccgaaa tagattcaga aggcacggaa acatgcagca gcaaaagttc tgggacttcg       420
     catggtcgtc gtgaatcgtt gcaagactgg ataacagagc agaatcattc gttggaagct       480
     gcagttagcg atctggcgtt tactgaatca aggccgtctg caaaaccagc tttggttata       540
     aacacaggta caattcctaa aactgtctcc ggaaatctcc aaacaacgcc aatttttacg       600
     tcgactgcgg aactaccgat atttcaccgg agcgcaacgg caccaactgc gattgaactt       660
     cacggttcga tgcgagataa gcaactacca aaagattctg tacgaacatc gatgtacgag       720
     gacatgatga gtcaacacca aataccatcg aagcattcca ttcgaggtca gcaaagtcgt       780
     attccgatat cttcgtctat tggtcaaaca ataccactgg ctccaccgac taacacaatc       840
     ggcgtactgg aaccaaccgg tttagaaaac cttatgacga accaggattt acctactgta       900
     gcgccacttc ggagaatgga atcaaatcga tcattgtgtg aagaaaatca acatggcctt       960
     acttatatcc catctacctc tcatcagctc gaacaatcta tatacacgtt cgaacgagcg      1020
     gtgacccaaa atcagcgaag tacacctcaa cctgcaccaa gacatcaata tgcgatcgac      1080
     cgagaagtat atactcagca tcgacctcag catggtggtg ttcagttcct ctctgcaaat      1140
     tcacctgctc cacgaaatga gcgagatgga cataatgtct catcacggta tttgaacaat      1200
     agtgatgccg atgatcaaat catacgcagc cctctactat ctgctagtca ccacacaaca      1260
     ccatctaacc cacaccagca tgctgttgaa caattgtgct catcacaacg agtttcgcat      1320
     ccgcatagct atcaacaatc tgtttatcaa cagaaccaat cagtacagcc gtcccacccg      1380
     ttggaatcag tagccatgat cagttcacag caactcgctg ctagacaggt agttccaaga      1440
     gaattgccga aattttctgg agacccgttg gaatggccaa tgtttctgca agctttcgag      1500
     acgacaacac agttatgtgg tatacaacca gatgaaaatt tggctagact acagaaatct      1560
     ctcattggtt gtgctcgcga aaaagtgcaa agcattctca ccttgccagc tgctgttcca      1620
     gacataatag caacactacg agatgaatgt ggtagacccg accaattggt gcaccgtttg      1680
     atgatgaaag tcagaaacgc tccccatcca aacattaaca aattggacac actcatcaca      1740
     tttggtcgag aggtcggcaa cctcgtgaca ttcattgaag cagcaaatct acaagcccat      1800
     ctttccaatc ctatgttgct cacagagttg gtgtcaaaac ttccaccaaa cttgagactc      1860
     gattggggat tacgttctcg atcaactggg gacgtctcat tgaaagcatt tagcgatttc      1920
     gtatcagcga ttcggtctgc tgcatgccac gtatcattgc catcagaaac atttcaaaca      1980
     gaagatgtgc agacgagaaa gagggataag cagagcttca tcaatgctca tatctcagag      2040
     gagtcggaat caacaaagcc aatgaacttc cctaatctag atgtgaagcc ttgtcctaaa      2100
     tgtaaccaaa ttggacataa gttacgtgat tgtgacaagt tcaagggatc gactgtacaa      2160
     gaaaggcgaa aattggttga ccagtatagt ttgtgcatgc gttgtctggt gggacatgga      2220
     aaatggcctt gccgaaccaa acaaccatgc ggactgaatg gatgttgcga gatgcatcac      2280
     aggttgttgc acacggattg tattatgcag aaggaaggcg catcgagttc ctcagcatta      2340
     gtttcaacac atcattgctt gctgcaatct acgtacttca agatacttcc tgctacactg      2400
     catgtggccg gtaaaacagt catgacatat gcctttctgg atgacgggtc cagccacaca      2460
     ctgttggacc aagatttggc agacgagctt ggtcttgatg gcgaggcagt tcctctttgc      2520
     cttcaatgga ctggaaatgt aacaagaaag gaatcaaatt cgagacgagt tagtttgggc      2580
     atttcaaatg ttaatggagg agctcaatat gacatgtttg atgttcgcac agttaagaaa      2640
     ctggatcttc ctcggcaaac tatggattat agacagctgt cttgccaatt tccttacttg      2700
     cagggcctac cgattggaag ttatcgcgat gctgttcctc gtatacttat tggagcgaat      2760
     aatgcgaact taatcttaac attggatcgt cgtgaaagaa gggtaggaga gccagtggct      2820
     acaaaaactc gacttggctg gacggtgttt ggaggtatga ggaacactgc tgaacgcgcc      2880
     aatcttatgg ttcacgtatg tggatgttca aaagatgata ctttgcatga gctggttaag      2940
     gaatatttca caatggataa tattggaatc aacggttcaa ctctggagtc gttcgaagac      3000
     caacgtgcgc ggaagatttt gcaggacacg accaagcgca cctcttccgg taagtttgaa      3060
     accggcttat tgtggcgtag tgatgatatc gatatgccaa atagctttcc tatggctgct      3120
     aagcgtctaa cctgtctcga aagaaaacta cacaaggaac cagaattaaa aaagaaagtt      3180
     gacgagttaa ttagtgaata cctacagctc gggtatgcac atgtagcgac agatgaggag      3240
     ctccgattat cggatcccaa gcgaacttgg tatttaccat tgggagttgt acgtaaccct      3300
     cggaaacctg acaaggtgcg cgttgtttgg gacgcagcgg caacactaaa cggcgtttca      3360
     ttaaattccc ttctcttgcc tggacctgat ctgctcacgc ctttattgac tgtgttatgc      3420
     cagtttctgc aacgacaata cgctgtttca gcggatattc gtcagatgtt tcatcaaatc      3480
     atcatcaggc aagaagatcg acaagtgcag agattcttgt accgctatag tcctcaatcc      3540
     aatccgacag tatacgtgct agatgttgct acgtttggcg cgacatgttc gccttgctca      3600
     gcgcaatatg ccaaaaactt gaatgcttct gagtacagta gtagtttccc agaagcggca      3660
     gaggccgtta tcaaaaatat atacgttgat gactacctcg attctcggga cacaatcgaa      3720
     gaagctgttc aactgtcgtt ggatgtgcgg gaaataaatt taaaagcggg atttgacctt      3780
     agaaattggc agtcaaactc caccgaaatt ttgcgtcgtg ttggtggtaa ctaccatgca      3840
     gcggagaaaa gctttgctgc agagaaagcc acaccaatgg aacgtgtcct gggaatatca      3900
     tggatgactg aaaacgacgt attcgtgttc tcagctcagt ttcggcaaga tttaacacct      3960
     attctgtcca atggtatcgt tcctaccaaa cgccaagttt taagcgtggt aatgagctac      4020
     tttgacccgc ttggaataat caccaactat accatccacg gaaggatact gctccaagat      4080
     atttggcggt ccaatgtgaa gtgggatgat cccatcactg acagagactt ctccaactgg      4140
     cagcgatgga tattacaggc accactactc aacaaagtta tgatccctcg ctgctacttc      4200
     ccaaattatg atacaaacag ctatgattca ctccagttgc acgtttttgt agatgctgga      4260
     gatcaggcgt acggagctgt tgcatatttc cgtattgtgg atcgtggaac accacgatgt      4320
     gcacttgtat ccgcgaaagc aaaagttacg ccattaaagc ctctttctat cccacgatgc      4380
     gagctaaatg ctgccgtcat tggagttcgt ctcatgaaga caattgaaaa cagtcactct      4440
     ctcaaaatca aaaaacgttt tctatggacc gattcaacta ctgttctatc ctggcttcat      4500
     gccgatcctc gaaaatataa acagtatgtt gccttgaggg tctccgaaat actctctgaa      4560
     agtgaggtaa acgagtggta ttggatcgct acatcgaaga acatcgctga caagacaacc      4620
     aaatggggca ctgggccaga tttcgaacct gagagtgatt ggtatagagg cccgagcttt      4680
     cttcttcaat acgaaactga atggattatt aaacgtcccg gcatcctgga cccaccggag      4740
     gagcttaaag tagctaatat tcataatgta ataagctttg aaccaatagt ggactttaca      4800
     aagttctctg aactaaaagc gttaataaag cggttagctt accttcatca ttttgggcga      4860
     tgttgccgcc tcaaatcaag gtatccgtcg gcagaaagca aggtactgtt atctcaggaa      4920
     gacttcgaag ctgctgagag gagtatgtgg agaataatcc agctacaaga gtattccaac      4980
     gagatttctg tcctaaaaag gaatgcaact ttgccaacca acgaacaaat tcgcttagaa      5040
     aagtccagct cgttgtcaaa attatccctg tttctcgatg acgatgaaat acttcgagta      5100
     cagactcgga ttgatccgga agcagcatat tatgctttca actttcgtaa tcccatcgtt      5160
     cttccgaagc ataaccacgt gacagaatta ttagtgttgc aataccatca acagtttgga      5220
     cacgccaatg tggaaatcgt cgtgaacgag ttacgacaac ggtattatat accaagactc      5280
     cgaactgtcg tgaaaaagat ggtgaggcga tgtatgtggt gtcgcgtgta tcgagcagtt      5340
     ccacgaactc cgaaaatggc agcgctacct caacctcgag ttcagccata tgtacgacca      5400
     ttttccttca tcgggttgga ctattttgga cctatgatca tcaagagagg gcgtacgaat      5460
     gttaagcgct gggtggcact atttacctgc cttacggtga gggcagtgca tttagaggtg      5520
     gtgcattcac tgtcttctga ttcatgtaag atggcgattc gccggtttat tgcacgacga      5580
     ggatcaccgc gagaaatttt tagtgacaat ggcactaact ttcgaggggc cgctcgagaa      5640
     ctagccgagg aaatcaaaaa tatcaacatc aagattgcat caacgttcac taatgctgat      5700
     acaaagtgga cattcacacc accatccgcc cctcacatgg gaggggtgtg ggagcgaaag      5760
     gttcgctcca taaaagaagc tttcaaatca ttgtgtcacc gagataaact cgatgatgaa      5820
     ggatttgcaa cctttctaat ggaagcagaa atgattgtga attctcatcc attgacgttt      5880
     gttccacttg atgaaccaaa ccaggaagta ctaacgccga acagtttttt gttgctggat      5940
     tctagtgggt ccaacaatgc tcctaaaatg cctatcaacg attccgtgac actgaagctg      6000
     aattggaaat tactaaatta tctgctgaat caattttgga ggacgtggat taaggcttac      6060
     ttaccgacaa tcgcacatag aacgaaatgg cttacggaag tacgtcctct tcaagttggt      6120
     gacttggtcg tcattgtaga tgaaggtgtg cgcaatgggt ggctacgtgg acgcattgtc      6180
     cgaacatatc cagctacaga cggacaagtt aggaaagtag acgtcaagac cgattcagga      6240
     atattgcaac gggctgcgac gaaggtagct atgctcgaca tacaggaaga tagtaagact      6300
     aattgaagat taggtattac ggggtgggg                                        6329
//
ID   BEL-659_AA-LTR repbase;    DNA;    INV; 604 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-659_AA-I;
KW   BEL-659_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-604
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-604
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 65-65 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 604 BP; 210 A; 102 C; 98 G; 194 T; 0 other;
     tgttgcgtcg agggaacgat tggcccttta cattgttaag cccacttcat atgatacact        60
     gtagaacgaa tatgtcaaaa aaccgataca ttgacagtga acgaatgcgc gcacgtttag       120
     ttgagtgatt tatagttcat ataatattat gcagttttct aaagaattta attaataagc       180
     ctactgaatt cgagttatag agctttgctt tatcatccaa atcctaaagt ttttttgaag       240
     tggtaatata gtttcgtaaa tactaaaatt gtaccatata accacaaatt tgtataccct       300
     tctaggaatc cactagcaag cgctttgtgg tatacattga cctagaataa ctaatttaag       360
     tcctattgat cagttgaaaa accgtaagtt gaactaaacc tagatttaaa agattaacgt       420
     gaattcgatt ttctgaattt tagtattggt ataaaaccac ccaagccatc caagtgcgct       480
     actatcaggc taattgagaa ccaatttgta agacaatagt catttaaatg taaataccaa       540
     actaataatg aaatatattt cagtcgagtt gcttggtaaa accctactgc gaaaagtttt       600
     caca                                                                    604
//
ID   BEL-65_AA-I repbase;    DNA;    INV; 5328 BP.
XX
AC   supercont1.275;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_AA_;
KW   BEL-65_AA-LTR; BEL-65_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5328
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.275; Positions  742532  747859.
XX
CC   'TGTAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1978..5295
FT                 /product="BEL-65_AA-I_1p"
FT                 /translation="MLNNHAVVNLHVDLDLNRILQKFWEQEEISKPLPLTP
FT                 SEQQVTEYFGSTLQRDETGRFIVRLPFDDSKPALGDSLAVATKRMKSIERR
FT                 FHLDPEFKRQYTSFMHEYQNLGHMEEVPAEQIQKDSSECYYLPHHAVLKSD
FT                 SLTTKLRVVFDASCASTSGVSLNDKLLAGPNKNADLFAVALRFRSHRIAFC
FT                 ADVAKMYRQVLVHPADRDYQRIVFRDEPDQPLRHYRLCTVTYGTKTAPFLA
FT                 IESMREAAKPYEAVEAIKFDFYVDDFLSGADDEEEASQLKEQVVEILSSAG
FT                 FELRKWSSNNKKLLPTNDEDEAVPMKMLNDSETVKALGINWHPSEDVYGFK
FT                 VNFSPLSINTKRQMISDSARLFDPFGWLAPVTVKIKILYQHLWLFDVFWDD
FT                 PLPAAQIRIPRCIFPNRGRIQLRGFSDGSEQAYAAVVYARTTDEQGDVSVV
FT                 LVAAKSRMAPIKQISLPRLELNGAHLLADLMHQITEALPHVQVEHWAWTDS
FT                 SIVLQWLASHPRKWKTFVANRTAAILEYLPRSCWRHVSSKDNPADLASRGL
FT                 SPAELVQNQLWFQGAPWLKEDESEWHQDPSLEEIDEDVMEVKRIKSLHIST
FT                 TKVSTSFEIEKRLFVKFSSFAFMVRLLACVHRAIHNFKAVVRNNDIDDRRT
FT                 GERTEDELNRAKIQLLQAAQHDEYGQKIELLRKGKSLQPKHILSALHPFLD
FT                 ADGTMRVGGRLQHSAQPYDKKHPIILPPKHRATELLVRELHLRNLHAGSAL
FT                 LAATLRQEYWVVGCQTVVRKVVQGCTRCVRLKGKTAGQLMGSLPPARVLAT
FT                 RAFSHVGVDYAGPVRLKATCVRGVKITKGYLVVFVCLSTRAVHLEVASDLS
FT                 SDTFIGALKRFISCRGYPVEIRSDNGTNFVGADRKLREFVEQILTHSKDAS
FT                 RYLSNLGINWVFNPPSAPHMGGIWEAAVRSVKKHQVAELGESAITFEHLST
FT                 LLCQIESCLNSRPLCPLSTDPDSAEALTPGHFLIGQPINLVPEPSVKQLPA
FT                 NRLDQWQEVQQQTERIWNRWKDEYLASLQPRSKWRTAQPNINVDQLVLVKN
FT                 DNASPAQWELARVEKIHPDSSGAVRVVTLRRGSTVYQRPIHKLCVLPFD"
XX
SQ   Sequence 5328 BP; 1398 A; 1312 C; 1385 G; 1233 T; 0 other;
     tttggacctt cgatccgaat aatgtcggac ctgcagaagt tgctaatccg ccggaacgcc        60
     ctgatggttc aggtgcgtgg agagctttca gtcgcagacg ctatcaagga gcggaagccg       120
     tccctaaatg aggttaggga ccgactgaac cagctaaagg agcttgctgc caatttccgg       180
     gagacacaag gatgcatcga ggagaagcag gagaatcccg aagctatcgc gtctgtccat       240
     aacgttcggg aggagttttt caccatgttt taccgagcaa aggatatttt cgagggcttc       300
     ctagacgtcg atgatgtttg atcatccgtc agccagcgaa cggcagtcga aaccaccgat       360
     tggaaagagg ctatgcattt gctcattgag acgcagcgga tgctactgct ggatcaagaa       420
     cggaccacga aaaccgttca aaatctgacg cagttgtcga atagtgcacc tctggatggt       480
     agtcaggtgt cgaatccttc accccagttg gctgttcgat tgcctgctat caatattcag       540
     ccattcagcg gagaacgtaa acattggatg acgtttaagg atatttacgt ttcgactatc       600
     cacaaccgag ttgacatttc ggatgcgctg aaaatgcagt atcttttttc atatcttgaa       660
     ggagatgcta agagattagt gagcaagttt acaatctctg gagcaaacta tcaaaatgca       720
     aggagcactt tgattaccca ctttgacaag aagcgctaca cagtgttttc gttggtgcat       780
     gaatttctgg ctcaatctcc ggttacacaa gctactccac agtcactggg cagattggta       840
     acaacatccg acgagattat ccagcagctg gacgcattgg gcgatgagtt caccggtcgg       900
     gacccatggc tgattcatct tattctggag aaattggaca aggagacaag agcaagctgg       960
     tcacaagaag ttgtcgacac ggaggatccc acttttgaag atttgttggg atttctcaag      1020
     aaacgttgtg aggtgctgga aacgtgttcg gcatttccga agaaaccagc gaatgaaccg      1080
     aagaaggagg cgaccaaacc ggtgccggcg aagctgaaga cgctgcatac aacagtggag      1140
     aaaaaagtgc gcgaagtgct ctagtgagca caatacgtat cagtgtgatg aatttaagaa      1200
     catgagtgta aaagacagac gagaactagt gcaaaaagcc aagttatgtt ttaactgcct      1260
     tcgaccatca cattcggtga aatcgtgttc gtcgaagtcg gtatgtcaca accccgattg      1320
     taaacagcgc caccacacgc tgctgtgttc cgtggcgaag agggctgaac aagtggaagc      1380
     gaaaaaagaa gaagacgtag ttccgtcgcc ggaagtgccc gcaaaggagg aaggtgtcgt      1440
     cgttgcattg acagccggaa tgccgatgag tgtgagcaag tcgttgctac ctacggcggt      1500
     agtgcaagtg cagcaagcgg acgggggttt cacgtcggcg agaattctga tcgattctgg      1560
     atcgcaggca tcactggtga ctgaagcttg tgttcggaag ctgaagctgc cgcgacgaaa      1620
     cgggaaactc gtggtcaacg gtcttggcca ccaagaagtg ggaacaacgc gtggtttggt      1680
     tactctgcgt ttggcatcgc ggttcaacga caccgtagtc ttgaccaccg aggcctacat      1740
     tctcggaaaa ttgaccacca ctatcccatc ccagcgaaca tgaagctctt ggacgaccta      1800
     ggagaactag ccgacccgga attcaaccgg ccgggtgcta tcgatatcat cctaggtgca      1860
     gacgtttttc ttgcacttct ggaaggagga caagtcaaaa acgaaagcgg ccaaacggtg      1920
     gcccaatgaa cgattttcgg atggatcgtt gccggacaat atgacgcgtc ggaagtcatg      1980
     ctcaacaacc acgcggtcgt aaatctgcat gtcgaccttg atctgaaccg catcttgcag      2040
     aaattttggg agcaggagga gatttcgaag ccactaccgc ttactccttc tgagcagcag      2100
     gtcaccgagt atttcggttc gaccctgcaa cgagacgaaa cgggtcgctt catcgtcaga      2160
     cttccctttg atgattcgaa gccagcgctc ggcgattccc tcgccgtagc cacgaagcgg      2220
     atgaagtcca tcgagcgacg attccatctg gatcccgagt tcaagcgcca gtacacttct      2280
     ttcatgcacg aatatcaaaa ccttggtcat atggaagaag ttccggctga gcagatacag      2340
     aaggacagca gcgagtgcta ttatctgcca caccatgcgg tactaaaatc ggatagtttg      2400
     actacaaaac tacgtgtcgt ctttgacgcg tcctgtgcgt caacctcagg agtctcgctg      2460
     aacgataaac tgctagctgg acctaacaag aacgctgacc tttttgctgt ggcattgcgg      2520
     ttccgttccc atcgaatagc cttttgtgcg gatgtagcca aaatgtaccg ccaggtactg      2580
     gtgcatccgg cggaccgcga ttatcaacgc attgtgttcc gagatgaacc agatcagcct      2640
     ctaagacatt atcggctctg taccgtgaca tacggtacca agactgcccc gttcttggca      2700
     atcgagtcca tgagagaagc agccaaaccc tacgaagcgg tggaagcaat caagttcgat      2760
     ttttacgtcg atgattttct gtcgggtgcc gacgacgagg aggaagcaag ccagctaaag      2820
     gaacaggtag tcgaaatcct ttcgtctgct ggtttcgaat tacgcaaatg gtcgtctaac      2880
     aacaagaagc ttctaccgac taacgacgag gacgaagcag tgccaatgaa aatgttgaat      2940
     gatagcgaaa cagtgaaggc cctcggaatt aattggcacc cttccgaaga cgtatatgga      3000
     ttcaaggtca acttttctcc gctcagcatc aacacaaagc gccagatgat ttcggactca      3060
     gcaagactat ttgacccttt cggttggttg gctccagtaa cggtcaagat taagattctc      3120
     taccagcacc tttggctatt cgacgtcttt tgggatgatc ctttgccagc cgcacagatc      3180
     aggattccac gttgtatttt ccctaatcgt ggtcgcattc aacttcgcgg attttccgat      3240
     ggctccgagc aggcatacgc agcagtggta tatgcgagga caaccgatga acaaggcgat      3300
     gtgtcggtag ttctagtcgc tgccaaatca cggatggcac caatcaagca aatttcactg      3360
     ccccgcctgg aactcaacgg tgcacatcta ctcgcggatc tgatgcacca aatcacggaa      3420
     gctctaccac acgttcaggt cgagcattgg gcgtggactg attctagtat tgttctccag      3480
     tggctggcgt cccatccccg aaaatggaaa accttcgtgg ccaaccgcac tgctgctata      3540
     ctagaatacc taccacgaag ctgctggcgc cacgtgtcta gcaaggacaa ccctgcagat      3600
     ttggcatcgc gaggtttgtc acctgccgaa ttagttcaaa accagttatg gttccaagga      3660
     gcaccgtggt tgaaggaaga cgagtccgaa tggcatcaag acccatccct ggaagagatc      3720
     gacgaggatg taatggaagt caagcgtatc aagtcactgc acatctcaac gacgaaggtt      3780
     tctacaagtt tcgaaatcga gaagcgactt ttcgtcaaat tctccagttt tgcatttatg      3840
     gttcgcttgt tggcttgtgt acatcgagcc atccacaact tcaaggccgt tgtgcgcaat      3900
     aatgacatcg acgatcggcg caccggtgag cgaactgaag atgaactaaa tcgagcgaag      3960
     attcaactac tacaagccgc ccaacacgat gagtatggcc aaaaaataga acttctgcga      4020
     aagggtaagt ctttgcaacc caaacatatt ctttctgctt tgcatccctt tctggacgct      4080
     gatggaacta tgcgtgtggg tgggcgtctc caacactcgg cccagccata cgataagaaa      4140
     caccccatca ttctacctcc aaaacatcga gctaccgagc ttttagtgcg tgagctacac      4200
     ctacgtaatc tccatgctgg atcggctctc ctggcagcta ctcttcgtca ggagtattgg      4260
     gtagtcggtt gccaaacggt cgttcgtaag gtggtacaag gctgtacacg atgcgtacgt      4320
     ctcaagggga agacggctgg tcagctgatg ggaagcctac cgccagctag ggtgctggcc      4380
     acgagagcgt tctcccatgt tggtgtggac tatgctggtc ccgtaaggct taaggcaacg      4440
     tgcgtccgag gagttaaaat caccaagggg tatctcgtag tgttcgtgtg cctatcgacc      4500
     cgtgcggtgc acttagaagt ggcaagcgat ctttcatccg atacctttat cggcgctctc      4560
     aagcgattca tatcatgccg tggttaccca gttgagattc ggtcggacaa cgggaccaac      4620
     tttgttggtg cggaccgtaa gctacgagaa ttcgtggagc aaattctgac gcacagcaag      4680
     gacgcaagtc gctacctttc aaatctggga atcaactggg tcttcaaccc cccatcggcg      4740
     ccgcatatgg gcggcatttg ggaggccgcc gtacgaagtg ttaaaaagca tcaagtagct      4800
     gaacttggag aatcagctat tacgttcgaa catttgtcaa ctctgctatg ccagattgag      4860
     tcgtgcctca attcacggcc gttgtgtcca ttgtccaccg atcctgacag cgccgaagct      4920
     ttgacacccg gacatttttt gatcgggcag cccatcaatc tggttcccga gccaagtgtg      4980
     aagcaactgc cagccaaccg gcttgatcaa tggcaagagg tgcagcagca aaccgaaaga      5040
     atttggaatc gatggaagga tgaatatctg gctagtcttc aaccacgaag caagtggcgt      5100
     accgctcaac cgaatatcaa cgtagaccaa cttgtgctag ttaagaacga taatgcctcg      5160
     ccagcgcagt gggagctggc acgtgtcgag aagattcatc ctgattcatc gggagcagtt      5220
     cgagtggtaa cgctacgcag aggttctaca gtataccagc gaccgatcca taaactctgt      5280
     gtgctaccat tcgattgatg ccccttcgtg gcctcaaggc ggggagga                   5328
//
ID   BEL-65_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   supercont1.275;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_AA_;
KW   BEL-65_AA-I; BEL-65_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-268
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.275; Positions  742264  742531.
XX
SQ   Sequence 268 BP; 72 A; 60 C; 52 G; 84 T; 0 other;
     tgttccggct tcgtatcgcc cctcgtacga tcgccgtatt attttctatg ctatgacttg        60
     tcactaatat attttccact gggactgaaa aagcgcggta accaccgctt gtgaaaagaa       120
     aaaaaagagt tagtttgtag tctgtcatca acgtgaataa acgtttttgt atttgctttc       180
     cgaagtcgcg tgcaatttta cttatatttc cggaaaaccc gcagtccaag tcgcgtagtg       240
     aatttacagt ccattccatg ccgaaaca                                          268
//
ID   BEL-65_CQ-I repbase;    DNA;    INV; 3145 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_CQ_;
KW   BEL-65_CQ-LTR; BEL-65_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3145
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 283-283 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TGGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..3144
FT                 /product="BEL-65_CQ-I_1p"
FT                 /translation="MFRRSSPALPDPVPEAFLALPGPVPGVSPSLSDREPE
FT                 ANHVLPNPVSEASLALPGPVPGVFPSLSDRVPEANHVLPNTASEASLALPG
FT                 PVPGVFPSLSDRVPEANHVLPNTASEASLALPGPVPGVFPSLSDRVPEANH
FT                 VLPNPVSEASLALPGPVPGVFPSLSDRVPEANHVLPNTTSGASLALPGPVP
FT                 GARPALADRVPEALQNLDKLAAALYRRERVRQRIIQIQRDFRDQKHPTLKS
FT                 VTMTKNKVWSEYHEFNRCHGEVIILVPEEALNEQEEVYWVFESLFNEVAVP
FT                 VEELLLDIQKTSFKKLDPQEVRYEQFSSAPKPKPAATPKPVPTSASTHVNP
FT                 MVFTTTPIKSDPRSSTSPHEVILVPGRYAPPKKSIEVVGLKPEPNPESSLI
FT                 QLKTPEKHIATESICELVSDSRPILSSAQPSAVDSRPREVFNMLPIADIKS
FT                 DFPETTDYLKNVTAKEESGPVLPAIPFIQVSPHHKVIDTDPRRVHSEEPKN
FT                 HPDFELQQNCAQSLSLSAMAACRIRSGDSNRHRGTKSVAANEARSQKCVEI
FT                 RLPIVSADLVFAEVPEDVANSANSERDEEATNSRQRASFCEVLPDSIPEQN
FT                 PEAVPLDQTVALDPDINRFHPESGLNNPQDEADSSRVTRDSGSKVTKIPTK
FT                 MIPRSRGAPVFPERNSQKRNDTNSNPVPRVQISVKNTLHVHLDIVPKTSIS
FT                 LVKTVAEKDPLMPPVSKATGKLELFSTIGKSQPRKCGVPPARCQPRQLCQE
FT                 CAKLQNQTKEVTNQEINYNKDTDDCALQVGRPYAPPSRREQVTYKLTWINL
FT                 IKPGGMCRIAHSETASCNPFPALYREAIGVPKKQSFDNPDRTDDLALTAAV
FT                 AVLQLLQGPRDTLQNQDKKPATQSRPNDTLSDEKVAQEWLINRELVATKML
FT                 NTSDPYLAEETLPVNEHETERQLGEARTTVKILSRPWDPGSTSHTSSPIQN
FT                 KPRNKTEDPELLLNQRFNGGN"
XX
SQ   Sequence 3145 BP; 792 A; 969 C; 804 G; 580 T; 0 other;
     taaaatggtc caaacgaacc ggattccaag tgactgcttc tgctgctgcc ccgtgctgac        60
     gtgtccgatc gtgttcgttt cttgaacacc gcgcgcgagt gaaaaccaat ttcgtcgcgc       120
     cactcgacac gaaaaaagtg acacttcaaa aacagtgcaa aagtgcacct gtttggccgg       180
     acccagttcc ggagacaatc ctggccttgc cgaaccatgt ttcggaggtc atccccagcc       240
     ttgccggatc ctgttccgga ggcattcctc gccctgccgg gtcctgtccc gggggtttcc       300
     ccgtccttgt cggaccgtga accggaggca aaccacgtcc tgccgaatcc cgtttcggag       360
     gcatccctcg ccctgccggg tcctgtcccg ggggttttcc cgtccttgtc ggaccgtgtt       420
     ccggaggcaa accacgtctt gccgaatacc gcttcggagg catccctcgc cctgccgggt       480
     cctgtcccgg gggttttccc gtccttgtcg gaccgtgttc cggaggcaaa ccacgtcttg       540
     ccgaataccg cttcggaggc atccctcgcc ctgccgggtc ctgtcccggg ggttttcccg       600
     tccttgtcgg accgtgttcc ggaggcaaac cacgtcctgc cgaatcccgt ttcggaggca       660
     tccctcgccc tgccgggtcc tgtcccgggg gttttcccgt ccttgtcgga ccgtgttccg       720
     gaggcaaacc acgtcctgcc gaataccact tcgggggcat ccctcgccct gccgggtcct       780
     gtcccggggg ctcgcccggc cttggcggac cgtgttccgg aggcactcca gaatctagac       840
     aagctagcag cggcactcta ccgccgggaa agagtaagac agcgaatcat ccagatccag       900
     cgtgactttc gggaccagaa acatccgacc ctgaagtcag tgacgatgac gaagaacaaa       960
     gtgtggtcgg agtatcacga attcaaccgg tgccacggcg aagtcatcat acttgttccg      1020
     gaagaagcac tcaacgagca agaggaagtt tactgggttt tcgaatcgtt gttcaacgag      1080
     gtggccgtgc cagtcgaaga gttgctgttg gatatccaga agaccagttt caagaaactg      1140
     gatccccagg aggtcaggta tgaacagttc tcatccgccc ctaagccaaa gccagcggca      1200
     acaccgaaac cagttcccac tagcgcttcc acccacgtaa atccgatggt cttcacgaca      1260
     acgcccatca agtctgatcc acgaagctcg acatcgccgc atgaggtgat actggttcca      1320
     ggccgttacg cgccgcccaa gaagtcgatt gaggtcgttg gtctaaaacc tgaaccaaac      1380
     cccgagtcga gtctgatcca gctgaaaacc ccagagaagc atatcgctac cgagtccatc      1440
     tgcgagcttg tcagcgattc ccggccaatc ctgagctcgg cacaaccgag cgcagtcgac      1500
     tcccgaccaa gggaggtttt caacatgctc ccgatcgcgg acatcaagtc cgacttcccc      1560
     gaaacgaccg actacctcaa gaacgttacc gccaaagaag aatcaggtcc agtgctgcca      1620
     gcaatcccgt ttatccaagt ttcccctcac cacaaggtaa ttgacactga tccacgacgt      1680
     gtccacagcg aggaaccaaa gaaccatcca gacttcgagc tccagcaaaa ctgcgcccaa      1740
     tcgttgtcgt tgtcagccat ggcagcgtgt agaatacgga gcggagattc gaaccggcat      1800
     cgaggcacca agtccgttgc agccaacgaa gccagatcgc agaaatgtgt ggagataagg      1860
     ctgccgattg tctcggcgga cctagtgttc gcagaagttc ctgaagatgt cgccaacagt      1920
     gcaaactccg aacgtgacga agaagctacc aacagtcgtc aacgtgcgag tttctgtgaa      1980
     gtccttccgg acagtatccc cgagcagaac cctgaagctg tgcctctgga tcagacggtg      2040
     gcgcttgacc cggacatcaa ccgtttccat ccggaaagcg gtctaaacaa cccacaagat      2100
     gaagccgatt ccagccgtgt cacgagggac agcggctcca aagtgacgaa gataccaaca      2160
     aagatgatcc cccggagtag aggtgcaccg gtcttcccag aacgcaattc ccaaaaacga      2220
     aacgacacca actcaaaccc agtgcctaga gtgcagattt ccgtcaagaa caccctccac      2280
     gtccacctag atatcgttcc caagaccagt atttcgttgg tgaagaccgt tgcggaaaag      2340
     gaccccctga tgccacccgt gtcaaaggct acaggcaagc tcgaactgtt cagcacaata      2400
     ggaaaaagcc aaccgcgaaa gtgtggtgtc cctccggcca gatgccaacc acgccagcta      2460
     tgccaagaat gtgccaagct ccaaaaccag accaaggaag tgaccaacca agagatcaac      2520
     tacaataagg ataccgacga ttgcgcgttg caagtaggcc gtccgtacgc gccaccatca      2580
     cgccgcgagc aggtcacata caagctgact tggatcaatc tgatcaagcc tggcggaatg      2640
     tgtaggatcg cccattccga aactgcgagc tgcaacccgt ttcctgcgct gtaccgagaa      2700
     gcgatcggtg tccccaagaa acagtcattc gacaacccgg atcgaaccga cgatctggca      2760
     ctcaccgcag ctgtggcagt gctgcagttg ctccaaggac ctcgagatac tttacagaac      2820
     caagacaaga aacctgccac ccaaagcagg cccaacgata cactgtccga cgaaaaggtt      2880
     gcgcaggagt ggctcatcaa ccgagagttg gttgcaacca agatgctgaa cacaagcgac      2940
     ccgtaccttg ccgaagaaac cctaccagta aatgaacacg aaacagaacg acagttaggt      3000
     gaagccagaa caacagtcaa gatcctgagt cggccctggg acccgggatc gacaagccac      3060
     acgtcgtcac ctatccagaa caagccgaga aacaagaccg aagatccaga actgctgttg      3120
     aaccagaggt tcaacggggg gaata                                            3145
//
ID   BEL-65_CQ-LTR repbase;    DNA;    INV; 383 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_CQ_;
KW   BEL-65_CQ-I; BEL-65_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-383
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 284-284 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 383 BP; 119 A; 115 C; 88 G; 61 T; 0 other;
     tgttacgtct gaccgaagac ttgcccccac ccttgcaaca cccgttgact acgccgctga        60
     gcaacgccgc agctgtcaac ctcaccgaca actacaacgg cccgcaacga gtttggccac       120
     caacgaggtg gagaaaagct cgcctactgc gcactgacta gtcccgatcc acccaccgaa       180
     cgattagcac gtgcagcaag aacccatcaa gacagaagca gaaagataga aaggaagaag       240
     agttggtgaa gtgatagaag gaggaggaaa attaaagaaa cctagaaaat caaaccctcc       300
     cagtgttttg ctaccccgga caaatcttcc accgcgaaac agtccacttc cgtcagttca       360
     agaggccgcc gttggtccga aca                                               383
//
ID   BEL-65_DTa-I repbase;    DNA;    INV; 6136 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6136
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 99% identity to
CC   each other.
XX
SQ   Sequence 6136 BP; 2019 A; 1235 C; 1221 G; 1661 T; 0 other;
     tctttcaatt ttgtacttta aaatcaaagc gttctcggtt ttattacacg ctattgcgaa        60
     attgttaagt ttggagaatt ttatacatcc atatagtgct ctgccgtcac agcgccatcg       120
     ccgcgtcgct tttgtacata cactctgccg ttgtatgtat gaatatatgg atgtacgcat       180
     gatctcaacg acttgacgac gaatttgatc tgaactgcaa tttggagaat ttcatacatc       240
     catatagtgc cctgccgtca cagcgccatt gccgcgtcgc ttttgtacat acactctgcc       300
     gttgtatgtg tgaatatatg gatgtacgca tgatctcagc cacttgacta tgaatttgat       360
     atgaacaaat ttggagaatt tcatacatcc atatagtgcc ctgccgtcat agcgccattg       420
     ccgcgtcgct tttgtacata cactctgctg ttgtatgtgt gaatatatgg atgtacgcat       480
     gatctcaacg acttgacgac gaatttgatc tgaactggaa tttggagaat ttcatatatc       540
     catatagtgc cctgccgtca cagcgccatt gccgcgtcgc ttttgtacat acactctgcc       600
     gttgtatgtg tgaatatatg gatgtacgca tgttctcagc gacttgacta cgaatttgat       660
     ctaaaccaat ttggagaatt tcatacatcc ataaagtgcc ctgccgtcat agcgccattg       720
     ccgcgtcgct tttgtacata cactctgccg ttgtatatgt gaatatatgg atgtacgcat       780
     gatcttaacg tcgtgataaa acttccgtat tagacaataa acacatccta tgtaaaaact       840
     tggtatatgt gtaagcgtca cttgcataca tacacaaaat ataatggtga aattgactaa       900
     gactcgaaag gttctgggat atcacagtgg ttgaccataa gatagctgtg agccgaggca       960
     cagctagccg ccagggcaaa taaattacct ccatcgggtc acctgtgttg tattccgact      1020
     ttcgatatta gttaagacac gttttataca taaatgaacc agtataattt acgaagcaaa      1080
     acaatgtcag acgacgatga agatttacta aacaagacga ttctagagac tgctaataaa      1140
     atggactctg aagcaggtga gactccaggc cagagcaacg gcaccaatgc ggaaattact      1200
     gctttgctgg cggcactgcg aacagatttg atgaaaataa aagaaggaca atcggcaatt      1260
     ctagcagata taaaacaggc tcacatggga atacagcaca accaaatgaa aataaagact      1320
     ttatccgcac gacaactaaa gcagttcgaa acacttacac agaacaacaa agaagaagca      1380
     gacgatatcg atcctgaaag cacatcagaa ctaaacggtt caaatgaaaa cttaaatgct      1440
     agacctgtcg aacatagcta ttcacaccga cccagcgtac atttagagga tctaccgtcc      1500
     ttttctggaa ttactgatga gtggccacta tttaaacaga gttttgatga ctccacggaa      1560
     ctttttcagt atgataacag acaaaaccta atacgactgc gtaagtgttt gacaggggaa      1620
     gctaaagaga tagtatcgtc aatgatgatt tatccaaaca atgtcccaga cataatggag      1680
     gagttggaat tcaggtttgg aagaccagaa ctactaataa aaacccaact ggctaagata      1740
     aaagattttt caaagatatc tttcggtaag atagaacaaa tcgtaacttt tgccacaaat      1800
     gtccgcggag tagtcaatca tttaacatca tcgagttgca agcaacacct ttataaccca      1860
     attttgttag aagaattaat aaataaattg cctacaaatt tacaggtaga atggttacag      1920
     agcgtcgaga taactaatgc cgaagcgtct attgtgcagt tctctaaatg gctgtgcgct      1980
     accgctaaaa ttataggccg tctaccctcc gttatcgatg ctacaaagcc aatattcata      2040
     gccaaaacgc caaatagatc atcgaaatgt ctactatgtc aattggagca tcacctaact      2100
     gaatgcaaaa tctggaacga aaacacggat gttccaggac gatgggatat cgccaaggaa      2160
     aatcgacttt gctttgcttg tctttcaaag gggcacaatg tacaaagctg tcaaaaccaa      2220
     cgaaaatgca ggattgaagg ttgtaatcgt attcatcatg aaagtcttca ttatgagatg      2280
     tcaaacagaa actcgtccaa cccagggatg tcagcaacca cttcagaaga tcctcaacga      2340
     atgctttgca gtatggatac tcagataagt acaactaatt atctgttcaa aatcattccg      2400
     gttgttttat atgggccatt gggaaaaatc gactctttcg ccatgttcga cgaaggaagt      2460
     tctgtaaccc tcattgaact tgaaatagct gaccagcttg gtctgaaagg tagtgagact      2520
     gcacttaccc tacaatggta cgacaataag aaaagtaccg aaatgtccaa aaaagtacgt      2580
     cttgagatta gtggcatgga taaagttcaa tatgatatga aaggagtgca gacggtcaaa      2640
     aatttagacc tacccaatca atcgttttca aaaaatgagt ataaacattt acaacgttta      2700
     ccgattgcag actacatgga cggcaaaccg gtaattttaa tcggtctaga taatgttcat      2760
     ctaggactat ctagaaccct cgtcgaattg gatccgattc aaccagtagc cattaggaca      2820
     aagttaggct ggctggctta tggtccaaac aatcagatgt cgttaggccg ctctaaatta      2880
     tttcacatag aagtcgaaaa agaaaatgat ctacataatc ttgtaaaaga atatttagca      2940
     gcagaggatt ttggcatatc tgaattgcca cccctagagt ctatagataa catcagggcc      3000
     aaaaatataa tggaaaagac gactgttaaa atgcaagata gattccagat tggattatta      3060
     tggaaagaaa atgttaggct tgtagagaac tttaacatgg cagaaaaaag attgcagaaa      3120
     agtaaaaaaa ggaaatgtta aaatacatta acaagggtta cgccaaaaaa cttacggatg      3180
     aagaaatcgt taatcgtaat caacatgttt ggtatttacc acattttgct gtacaaacag      3240
     tacacaaacc tggaaaagtc cgtattgttt ttgatgcagc agctgagatc aacggagtat      3300
     ctttaaattc atgcttactt aaaggcccag acgaacaaaa atcacttgtt tcaatcttat      3360
     tacaatttag attgaaccaa gttggagtgg ctgccgacat caaagagatg ttttctcaaa      3420
     ttaaaacacg tccggaagat caagcagctc aacgtttcat atggagaaat ggcgacacca      3480
     caaaacccat cgaacactat gccatgacat caatgatttt cggagcgata tgctcacctt      3540
     tctgcgctaa ctatattaag aatagaaacg cccgactatt cgaggcacaa tatcccgcag      3600
     ccgtcgaagc tataattgaa aatcattatg tagatgactt agtcatgagc tttgaatctg      3660
     aggaacaagc tattgagatt tgccaacaaa ttgtactcat tcataagcag ggtggttttg      3720
     agttaaggaa tttcatatca aactcaaaca aacttcaaaa ggttatgaat gatgaaccac      3780
     aaatagagaa tatggttaac atggaaagtc aaagtaccag cgagaaagta ttaggaatgt      3840
     attggagtac acaaacagat gaatttaaat ttaaaacgaa atttcaccga attccgatag      3900
     atgtcataaa gagtatgcgc gttccaacta agcgcgaatt ccttgggata ataatggcca      3960
     tctttgatcc ctttggtctc ctggctgact ttaccatatt cgcaaaaatt cttatgcagc      4020
     agacatggag ttatgagata ggctgggatg aaacaattcc agaagaaatg catcaggagt      4080
     gggaatgttg gtggtctgag atacgtaaca tgaagagttt ccatgttccc cgccattatt      4140
     ccaaggttaa aatcaccagt aataacactg aattacatat ttttgtggac gctagttgtt      4200
     ctgcctttgc cgctgtagcc tatttgcgaa taatatgtaa tgaattaacc gaaattgtat      4260
     ttgtcttagg taaaacacga ctagctccga aaaagatttt gtccattcct agacttgaac      4320
     tccaggcagc tattcttggt gttcgcctac atactttaat aagagaaaaa cacaagttac      4380
     cgacaatgga accttatttc tggagcgatt cgaaaacggt tctacattgg attcactcga      4440
     cggctcgaaa atttaaatct ttcgttggac atcggatagc tgaaatttta gctacaacta      4500
     acggcaaaca gtggagatgg ataccgtcgt ccttcaatac tgcagatacc gccacacgtc      4560
     aatcaacgac accgaaaatc tcaagtagca gcccttggtt acatggcccg gcgtttttaa      4620
     agtcacccaa agcggagtgg ccttcaatgg ttccctataa gaacgcagga ccgatggaag      4680
     aagaaattat tgcgcacaaa gtcttgaact gcaaggtaaa cttaccaata atcaactata      4740
     ctaaatattc atcttacaga aaatgtcaac gagtggtcgc ttggcttctt agggcaaaga      4800
     gtatctggct taaaaatgaa tgtttaaagg gtgtactaac agtagaagaa ttaatggcag      4860
     ccgaagtgac cttatgccgc tgggtacaag aagagagctt tgctaaagaa attgccttat      4920
     tgcagttcca tttttttact ttctccatat atggaacaag atggattgtt acacctctct      4980
     ggtagaattg atgaagcaac atttcttccc gaacaagccc gtcgacctat tcttttacca      5040
     aaggaccatt atttttcgga actcataatt cgacactttc atgaagaatt ccaccatcaa      5100
     aactcagcta ttactataaa tcaagcacgt cagaaatttt ggatcccaaa cataaagaca      5160
     gtactaaaga agatctgtcg tacatgtaca cagtgtatca tcaccaagag ccaacccagt      5220
     tcacagttga tgggccaact accagctgaa cgggtaactc catatgtccg accctttact      5280
     tacactggtg ttgatctatt cggggagtaa ttttcacgtg tctgactgtt agagcaaccc      5340
     atttggaact tgctgaaaac ttatccaccg atgcctttat tgtctgctta cgcaatttca      5400
     tcaatcgtag aggaactcca ttagtcattc gaagcggcaa tggatcgaat ttcatcgggg      5460
     ccaaaaaaga gttaaatgac aacagcagct tgtttgattt tgatgcctta ataagcgaaa      5520
     cttcgaaaag agcaattaaa tggatattta attgtccagg acagcccaat gcaggaggtt      5580
     gttgggaacg gctgatcggt atagttaaaa aactattaaa caaaactctt cgagatgtta      5640
     cacccccggt tgaaactctt cgatctgctc taattgaagc ggagaatatt ttgaattcac      5700
     gacctcttac ggacatacct cttgcacata tagactccaa atcatttttt gatgggatgt      5760
     ttgaattcta ctcagacacc acatacaccg gaagcggcca tttgtcttcg caaacaatgg      5820
     agaatcgcac aaacccttaa agaccgaatc tggaaacgct gggtgacaga gtatttgcct      5880
     caattaatcc gtcgacagaa gtggcacaca actaacccaa acgttaagat cgatgattta      5940
     gtactcatta tggatcccaa cttaccccgg agtgcgtgga aaaagggacg aattacaaaa      6000
     ctgtatccag cacgtgatgg acaagtgaga tgtgttgatg ttcagacttc gaataacact      6060
     atacgtcgac cagtcttaaa gcttatcagg ctacaattta atggtgaatc tcagcgcgat      6120
     tcacaggagg ggggga                                                      6136
//
ID   BEL-65_DTa-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-65_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-286
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 99% identical to the other LTR.
XX
SQ   Sequence 286 BP; 101 A; 28 C; 56 G; 101 T; 0 other;
     tgttatgatt tcattcttaa taatttgcct tattttaatt tgaatatatc tataataata        60
     tcgatacttc aaatgtgtta cactgttaat ttagtatatt tgtagggata tcgataattg       120
     gtatcgccag aaacgaaaga cacggacaca ctatttttgt gaggggattg tgtggaaaat       180
     tgtgaaacgg agcagtagcg tggataaaag acaaaattga aacgcatttg aattaaataa       240
     attgtttgaa agtaaatttg tgtgtttaaa tttacgaaag gtgaca                      286
//
ID   BEL-660_AA-I repbase;    DNA;    INV; 6245 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-660_;
KW   BEL-660_AA-I; BEL-660_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6245
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6245
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 98-98 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..5212
FT                 /product="BEL-660_AA-I_1p"
FT                 /translation="MPETSRFDCRCCSLANNIDDMVECEGGCGGWFHYGCV
FT                 GFDDGKKEEHWKCSSCVTGTAANAPEPGATGGQGSRQSGFTTVSGMGGPCS
FT                 SDPSAERMKRNLKLLEEQQSFLLREIELEQKREFEQKKLQLEKEAWRVRYE
FT                 LLNTQTGQLQDVNELGIVGDWANRLSLVASNINSTSGTSKSDLTSANTNVS
FT                 IPAPLNSASAISSQASAPISSLLACSTGPSQGINSMGMLPPVSSTLQRSSF
FT                 PVGARSIAMDVQSASASNPYVMGPAPSYIHDFLPGGGRGQPGSSTPITSTT
FT                 SVPWSDPATSYTYLTQSLPPTISTVGQLGSFPLQTTHVSQNNQLPSYGNQM
FT                 SLGIGLGQVPQYPMYSTVNPQASQINVNMPYAPISYPQSIPNPPQIFSTNQ
FT                 APSTVNMGDLGGPSPRQLAARHAISRDLPSFSGNPEEWPMFHSAFYTSTEA
FT                 CGYSEVENLGRLQRCLKGSALEAVRSRLLLPSAVPQVMQTLQLLYGRPEQI
FT                 IYSLLTKVRDVPAPKADNLKTLVTFGMAVQNFCDYLAAAGQVVHLSNPVLL
FT                 QELVDKLPAHLKLDWAVYKRQFPLVDLRVFGAYMANLVSAAADVTLTLDSA
FT                 ATKVAKPDKAKGYLNVHSSASSVIDTVKPKSDPTKSAASGVRCLICSDPNH
FT                 KVKECDVFKRLNGEDKWKTVHRHQLCRVCLGKHGRKPCRSQSRCEIQGCQL
FT                 RHHPLLHSSSTAPSTSSVTRNPESRVPATPTIVSNHPEGVNAHRHGQNTTL
FT                 FRVLPVTLFGNGKSINTFAFIDEGSSVTLLEKWIADELDVKGFKRRLCLTW
FT                 TGNVSRDEDDSHQVEIEIAGSGADVRYKLEEVRTVKSLALPKQSLRYGELA
FT                 TRYQHLQKLPVEDYEAVTPGILIGAEHAHLTATKQLREGKTGEPVAARTRL
FT                 GWAVYGPVQQGMQNSSFNFHICECGDDGKLHDLVKQYFTVESVGVSADKGP
FT                 ESEEEKRARSILEQTTRRVGERFETGLLWRFDHVEFPDSYPMAVRRLQCFE
FT                 RRLKANPKIEESVRRQIGEYQEKGYIHKAVEEELNSAEPHKVWYLPLSVVQ
FT                 NPKKPSKIRLVWDAAAKVNGISLNSMLMKGPDLVVPLPTVLYGFRERQVAL
FT                 GGDLQEMFHQVKIRFEDRQAQRFLYRETPTEKPTVFIMDVATFGSTSSPCS
FT                 AQYIKNLNAREHAVQYPRGAEAIERRHYVDDYLDSFDDEDEACRVAEEVRT
FT                 IHSRGGFTIRNWLSNSSEVLRRVGATSDCRQMVVGADKISQTERVLGMLWD
FT                 PKSDVFVYAAALDLSTITPTKRNILRCVMSQYDPLGLLSHFLIHGRVIIQD
FT                 IWRTKAAWDDTVGEEIQERWKRWTELFEDLKKVRLPRAYFPGVVSSEIEDL
FT                 QLHIFVDASETAYACVAYFRAKIRGKFHTALVGAKSKVSPLKSLSVPRLEL
FT                 QAAIIGCRLLKSLCASHSLPIKRRFIWTDSKTVLAWINSDHRRYRQFVACR
FT                 IGEILSKTSAEEWMWIPTKQNVADEATKWGRGPSLHSESRWFTGPQFLKEQ
FT                 QEFWPDQPTNVETPEEQKPCLVQHVQPQNFLVDWSRFSKFERLWRAIAYTH
FT                 RLVGNFRRKRLGLEPNVGHLTREELNKAQNSLWRLAQENAFPDEVALLKKA
FT                 ADDKRSVKLLKTSRIYKLSPCMDEHGVIRMDSRLRAAKFLAFDVQFPIVLP
FT                 KNHPLTNLLLDWFHRTYLHGNNETIVNEVRQRFHVPSLRTQVRKVTSSVCS
FT                 AN"
XX
SQ   Sequence 6245 BP; 1661 A; 1498 C; 1641 G; 1445 T; 0 other;
     tttctcaaaa gaattttgtt ggttatcgac gactggtgac cacaaaatgc cggaaacaag        60
     ccgtttcgat tgccgatgct gtagcttggc aaataatatt gacgacatgg tcgaatgcga       120
     aggtggatgc ggcggctggt tccactacgg ctgcgtggga tttgatgacg gaaagaagga       180
     agaacattgg aagtgctcga gttgtgttac tgggactgcg gcaaatgcac cggaaccagg       240
     agcaacaggt ggacaaggtt ctcgacaatc gggtttcacc accgtctccg ggatgggtgg       300
     accgtgttct tcagacccgt cggcagagcg aatgaaacgc aacctcaaac tgctagagga       360
     gcaacagtcc ttcttactga gggagatcga gttggagcag aagcgagaat tcgagcagaa       420
     gaagctgcag ctggagaagg aggcttggag agtacggtac gagctgttga atacgcagac       480
     tggccaattg caagatgtca acgagctggg gattgttggg gactgggcga atcgtctatc       540
     gctagtcgct agcaacatca attccacatc tgggacatcg aaaagtgacc tcacgtcagc       600
     aaacaccaac gtatccatcc ccgcgcccct caactccgcc agtgcaatca gttctcaagc       660
     tagtgccccc atatcatcgt tactagcttg ctcaactggt cccagtcaag gaatcaactc       720
     catgggcatg ctgccgcctg tatcaagtac ccttcagcgg tcatcgtttc cagttggtgc       780
     tagatcgatc gcgatggatg tccagtcagc cagtgcatcg aacccgtacg ttatgggacc       840
     ggcgccaagc tatattcacg attttctacc cggtggtgga agaggtcaac ctggttcatc       900
     aacacccatc acgtcaacaa cgtcagtccc ttggagcgac ccggcaacga gctacaccta       960
     tctcacccaa tcgttgccac ctacgataag tacggtaggg caacttggaa gctttccgct      1020
     acaaacaacg cacgtaagtc aaaacaatca gttgccaagt tatggaaatc aaatgtcgtt      1080
     aggaataggg ctaggtcagg ttcctcaata tccgatgtat agcacagtaa atccacaggc      1140
     tagtcaaata aacgtgaata tgccatacgc ccccatttcc tatcctcaat ccatccctaa      1200
     tcctccacaa atattcagca ccaatcaagc accctcgaca gtaaatatgg gtgatctcgg      1260
     agggccatcg ccacgtcaac tggcagccag gcacgcgata tcgagagacc ttccatcgtt      1320
     cagcggcaat ccggaggaat ggcctatgtt ccatagtgca ttctatacgt ccacagaagc      1380
     atgcggttac agtgaagtag aaaacctcgg ccgacttcaa cgctgtctaa aaggcagcgc      1440
     attggaagca gtgcgtagcc gactccttct gccctctgca gtaccgcagg ttatgcaaac      1500
     cttacaactt ctgtatgggc gtccggagca gattatctac tcgctcctca caaaagttcg      1560
     agatgttcct gcaccaaagg ccgataacct gaagacgcta gtgacgttcg gcatggcagt      1620
     tcagaatttc tgcgattacc tggcggcagc aggacaagtg gttcatcttt cgaatcctgt      1680
     acttctgcag gaactggtcg acaagctccc agcgcatttg aaattggact gggcagtgta      1740
     caaacggcag tttcctctag tagatctgcg agtcttcggt gcatacatgg cgaacctggt      1800
     ttcagcagcg gcggacgtaa cacttacgtt ggattcggct gctactaagg ttgctaaacc      1860
     agacaaggca aaaggatatc tcaacgttca ttcctcagca tcgtcggtta tagatacagt      1920
     gaagccaaaa tcggatccaa cgaagagtgc ggcctctggt gtgcgatgtt tgatctgcag      1980
     tgatccgaat cacaaagtta aggagtgcga cgttttcaag cggttgaacg gtgaggataa      2040
     gtggaaaaca gttcacagac atcaactctg tcgagtctgt ctcggcaaac atggacgaaa      2100
     accgtgccgt tctcaatcac gctgcgagat tcaagggtgt caacttcgcc atcatccact      2160
     tctacactcg agctctacag caccttcgac gagttcagtt acccggaacc cggaaagccg      2220
     cgttccagct actccgacaa ttgtttcgaa tcatcccgaa ggagtgaatg cgcatcgaca      2280
     tggccagaat acaacacttt tccgtgtttt gccggttaca ctatttggca acggaaaaag      2340
     tatcaacacg ttcgctttta ttgacgaagg atcttcagtt acgctgttgg agaagtggat      2400
     tgctgacgag ctcgatgtca agggtttcaa gaggcgactt tgcttgactt ggacgggcaa      2460
     tgtcagccgc gacgaagatg attcccatca ggttgagata gagattgcag ggagtggagc      2520
     tgatgttcgc tataagttgg aggaagtccg cactgttaaa tccttggcgc tgcctaaaca      2580
     gtcactccgg tacggtgaac tagctacacg ttatcagcac cttcagaagc taccagtcga      2640
     ggattatgaa gcagtgactc cggggatttt aattggagcc gaacatgccc atctaactgc      2700
     caccaagcaa ctccgtgaag ggaagactgg tgagccagtc gcagcaagga cccgacttgg      2760
     atgggcggta tatggaccgg ttcagcaagg gatgcagaat agcagcttca acttccacat      2820
     atgtgaatgc ggagatgatg gaaagctgca cgacctggta aaacagtact tcaccgttga      2880
     aagcgttgga gtttcagcag acaaaggacc agaatctgaa gaggagaagc gtgccagatc      2940
     aattctcgag caaacaacca gaagagtcgg agaaagattt gagacggggc tgttatggcg      3000
     gttcgatcat gtggagtttc ctgacagcta cccaatggca gttcgacggc tacagtgctt      3060
     cgagcgacgt ctgaaagcga accctaaaat cgaagaaagt gttcgacgcc aaattggtga      3120
     ataccaggag aagggatata tccacaaagc tgtggaagag gaactgaatt cggcggaacc      3180
     ccacaaggtc tggtatctcc cattgagtgt agtgcagaac cccaagaagc ccagcaagat      3240
     ccgtctcgtc tgggatgcgg cagcaaaggt gaacggaatc tctttaaata gtatgctgat      3300
     gaagggaccg gacctcgtcg tgccgttacc aactgttttg tatggattcc gagaacggca      3360
     agtggctctt gggggagatc tgcaagaaat gtttcatcaa gtgaagatac gctttgagga      3420
     ccggcaagca caacgtttcc tgtatcgaga aactccaact gagaagccta cggtattcat      3480
     catggatgta gctacgtttg gttccactag ttcgccatgc tcggcgcaat acattaagaa      3540
     cctcaacgca agggaacatg cggtacagta cccgagagga gccgaggcca tcgagcgtcg      3600
     acattacgtt gacgattatc tcgacagctt cgacgatgaa gacgaagcat gtcgtgtagc      3660
     ggaagaggtg aggacaatcc attcaagagg cggcttcacc atccggaact ggttgtccaa      3720
     ctcttctgag gttctgcgac gggtcggggc aacaagcgat tgccgtcaga tggtggttgg      3780
     tgccgacaaa atcagtcaaa cggagagagt tcttggcatg ctgtgggacc ccaagtcgga      3840
     cgttttcgtc tatgcagccg cattggattt gtcgacaatt actcccacca agaggaacat      3900
     tcttcgctgc gttatgagcc agtacgatcc actgggatta ctttcccatt ttcttatcca      3960
     cggccgtgta ataatccagg acatctggag aacgaaggct gcctgggatg atactgttgg      4020
     agaagaaata caagagcgct ggaaacggtg gactgaacta tttgaggatc tcaagaaggt      4080
     cagactaccg cgagcgtatt ttcctggcgt agtttcatca gaaatagagg atttacagct      4140
     ccacattttt gtcgacgcca gtgagactgc ttatgcctgc gtcgcatatt ttcgggcgaa      4200
     gattcgtgga aagttccaca cagcgctggt tggcgcaaaa tcaaaggtat caccattgaa      4260
     atcgctgtcg gttccaagac tcgagcttca ggcggcgatc atcggttgca ggttgttgaa      4320
     atcgctatgt gcaagtcaca gtttgcccat caagcgaagg tttatctgga ccgactccaa      4380
     gacggtcctc gcatggatta attccgacca tcgtcgctac cgccagtttg tggcctgtag      4440
     aattggagaa attttgtcca aaacgagtgc cgaagagtgg atgtggatcc ctacgaaaca      4500
     aaatgtcgcc gacgaagcta cgaagtgggg aagaggtcca agtctccatt cggaaagtcg      4560
     ctggtttact gggccacagt tcctcaaaga acaacaggaa ttctggccgg atcaacccac      4620
     aaatgttgaa acgccagaag agcagaagcc ttgcctagtg cagcacgttc agccgcaaaa      4680
     tttcttagtc gattggagcc gcttttcaaa attcgagaga ctctggcgtg ccattgccta      4740
     cactcatcgt ctggttggca actttcgtag aaaacgatta ggactggaac cgaacgttgg      4800
     ccaccttaca cgagaggagc tgaacaaagc tcagaacagc ctgtggcgtt tggctcaaga      4860
     gaacgctttt cctgatgaag tggctttgtt gaagaaggca gccgatgaca aacggtcagt      4920
     gaagctgttg aagacgagtc gcatctacaa attatcgcca tgtatggatg aacacggtgt      4980
     gatccggatg gactctcgac ttcgtgcagc taaattcctt gcattcgacg tccagttccc      5040
     gattgttcta ccaaaaaacc atccactgac gaaccttttg ttggattggt ttcacagaac      5100
     ctatcttcat ggaaacaacg aaaccatcgt caacgaagtg aggcagcgat tccacgttcc      5160
     atcattgcga acacaggtgc gaaaagttac aagttctgta tgcagtgcaa attaaagaaa      5220
     gcgaagcctt ctgttcctcg aatggcgcct ctaccagaag caaggttgag ccctttcgtt      5280
     cgaccatttt cgtacgttgg tttggactat tttggtccga ttcaagttaa aattggccgt      5340
     tcattggtaa agagatgggt ggccctgttt acgtgcctca ccattcgggc agtgcattta      5400
     gaggtcgcac actcgctttc tacaaactcc tgcaagatgg ctattcgacg ctttctagta      5460
     cgccgcggtt ctccgctgga aatttggagc gacaacggga cgaacttctt gggtgccagc      5520
     cgcgagctac aagaacagat gaatcaaatg aacgagaagc tgtcagcagt gttcaccaat      5580
     gccaccacaa agtgggtttt caatccaccg tcagccccgc atatgggtgg atcctgggag      5640
     cgactggttc gctccgtaaa ggttgctttc actgcactgt cgattaccag aaatcctgac      5700
     gatgaaacat tgttgacact gatggttgaa gccgaaggag tggtcaatac acgcccgctc      5760
     accttcatgc ctttggagaa tgattcacag gaagctttaa ctcctaatca ttttctcctg      5820
     ctcagttctc aaggagtgac gcagcgtcca gagccacgca tggagcggcc ggatgctctg      5880
     cggaacaatt ttgcgttaat gaggagtcta gtggatgaat tctggcaccg ctggattaag      5940
     gagtacttgc caactattgc tggccgttcg aagtggtttg aagaccccag agatttgagg      6000
     gagggcgagt ctgtaatcgt ggtggatgaa tctaccagaa atggatggtt acgcggacgc      6060
     gtattgtcgg tggtgaaagg gtgcgatgga cgagttaggc aagcctacgt caagactcca      6120
     acgggagttc tacggagacc cacttcgaag attgcgatct tggacatcca ggataagagt      6180
     tcgcaacatg gttttggtaa agcaggacaa acggagacca ttgaccagca ttacgggtcg      6240
     gggga                                                                  6245
//
ID   BEL-660_AA-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   25-NOV-2018 (Rel. 24.01, Created)
DT   25-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-660_AA-I;
KW   BEL-660_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-330
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-330
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 57-57 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 330 BP; 110 A; 58 C; 76 G; 86 T; 0 other;
     tgttgggggc actacgccac tgtccgatga agtcggacag ctgcgttcac ttgacagcag        60
     ttgagtcgaa gcgtggtgac agcttgattg tcaaaatcct caaaccatta tttgcaagtc       120
     acaaagaagg cagagttaaa ttgaatttca atataaaatt ataattgttg gttggtagga       180
     gaagttagtg ttcgaccaaa attgtaagta gaaataaggt atgaattgga atcagtaatg       240
     tttatacgga atatgaatta cagcttttga gcgcagtcta acacctaaaa gacgtgctgc       300
     aaaaacgagg tccgaaacta ccccccaaca                                        330
//
ID   BEL-661_AA-I repbase;    DNA;    INV; 6309 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-661_;
KW   BEL-661_AA-I; BEL-661_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6309
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6309
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6307
FT                 /product="BEL-661_AA-I_1p"
FT                 /translation="MEGQNDDRPAEGQTETSCVACQRPDEVEDMVQCDHCD
FT                 TWSHYTCAGVDENIADHSWVCGHCTGRQSDDAITVHSASSHRSSSSVFSVC
FT                 LSQMVERQQLERTRMEIELQRRHLDEQQKLIDRVLDGADAKSNHGDDFSGG
FT                 AAIALTSPSSNKRLSTPPPPGAPLVPNPRRSLPPTDTPRTTAPVVVSIPLS
FT                 ALEPNTVESLKRKKDPQVAMKELKKRVEQCEQRANPTPEQLADLQAQLETC
FT                 RKLLERFQADKQSAERSQQAEQSQPNPAVETSRVPKPTGTIPKVSRTLPTI
FT                 PDEPGAVGGTFRPDRVWPLKVPVSQTGSFSVSQPNPSTRPLENPGKRQALS
FT                 KFLENSNQYDISYCPTTNIPTSRVQLRNDARPEETQTPPIYPREQQRNSFA
FT                 HSNNDNSYNFVRELNSTSLPSRNPPTRAVESSQTPRQSDSAQHNPAIPNLD
FT                 QVRPTQQQLAARQSLAKELPRFSGDPAEWPIFISSYRYTTEACGFSDGENM
FT                 LRLQRCLSGPALETVRSRLVLPAAVPQVIETLRMRFGRPELLINALLRKVR
FT                 EIPAPRSDKLEGLIDFGMAVQALCDRIEAANERAHLTNPSLLQELVAKLPA
FT                 DQRMMWAGYKRGFQQVDLKTFGDYMAAVVQDATSVVTFEPDVKRSGALDRP
FT                 KNKGFVNSHAKESSEETVKSFHEPKDESKQFNCAYCKRGGHRVRECQAFRQ
FT                 LHVDDRWKQVRSLGLCQNCLYNHGRRGCRGRKICDIDGCQFRHHPLLHSSK
FT                 GPQRSSEALVQVAENHTHRHLTSGTLFRIIPVTLHGINKSINTFAFLDEGS
FT                 DLTLVENDLVASLGIKGTQLPLCLRWTGNTSRVEKNSQQITIEIAGFGQDK
FT                 RHKLLNARTVTNLGLPGQSFQVDEAAEQHRHLRGIPIASYQNAVPKILIGV
FT                 DNLRLALPLKVREGDGTAPVAVKTRLGWCVYGPRGTSRQESYSFHVCECSC
FT                 DDELHEAVKKFYAVEEAGSNPTQTMLTKEDERALAIMEATTQRVGNRFETG
FT                 LIWREIQVEFPDSYYVAVRRLECLERRMERDPGLKENLHRQIGEYERKGYA
FT                 HKLTVGEMEAADPKRVWYLPVGAVMNPKKPGKVRVIWDAAAKVNGVSLNSK
FT                 LLKGPDQLTSLPAILFRFRLYGVAVTSDIQEMFHQIRIRAEDRDSQRFLWR
FT                 ANPTEKPTIYVMDVATFGSTCSPASAQFVKNRNAELHSELYPEAAKAIVDD
FT                 HYVDDYLASFSSWEQAAKVARDVRFVHGDGGFNLHNWRSNSAAVLEALGEA
FT                 CLESDKQISLVDGVKTERVLGMLWSPSSDELSFSTQMSEEVQSLISTATRP
FT                 TKRQVLRCVMTLFDPLGLLSPFIIHGKVLIQDLWRVGTSWDEQVNEEIYAK
FT                 WHRWVQMIGYIAEIRIPRCYFQNADQNTYKSSELHVFVDASEVAYSCAIYL
FT                 RILDGGAESHCCLIAAKSKVAPLKPWSIPRLELQGCVLGVRWSRYVKSEHN
FT                 ISISKMVFWTDSRTALAWIKSDPRNYRQFVSFRVGEILEHTTSNEWRWVPS
FT                 KANPADEATKWGSGPYFDRNSKWFRGPDFLRLPETEWPRSNDQMSTTSEEM
FT                 RASILYHCSFEPPIDFARFSSWNRMLRTIAYVLRFLKNSDKKRPLRTGQLS
FT                 QTELQQAEAAIFKAVQRETYPDEITALSNKAPNESEQEVIGKHSSIFQLMP
FT                 MLDNSGLLRERGRIGSAEEVLFDVHHLIILPRKHRATELLVLDFHQRRQHG
FT                 NSETVVNEVRQLYNIPRLRSVVKKISRDCPLCKVRRARPVIPPMAPLPAAR
FT                 LAHHERAFTYTGVDYFGPLIVKLGRSNVKRWVALFTCLTVRAVHLEVAYSL
FT                 STESCISCVRRFVGRRGPPSEFFSDNGTNFQGADRVLRQQISQGLSTTFTS
FT                 TNTKWNFIPSGAPHMGGAWERLVQSVKAAMQEAYSEGKLDDEGLQTLVVEA
FT                 ERLVNSRPLTYLPLEAEESEAITPNHFLLLSSNGVKPRSGEGNASEHGHYP
FT                 ELVRREILGKSWELIQRQLNVFWKRWLVEYLPVIRRQPKWFEEARALVAGD
FT                 LVMVAEPTKRNGWERGRIVRTVPSPDGRHRKAVVQIGTKTLLRPVSRLALL
FT                 DLRDSSEAPEISGLHPGE"
XX
SQ   Sequence 6309 BP; 1658 A; 1637 C; 1728 G; 1286 T; 0 other;
     aaccttcaaa atttgaggta taatggaagg acaaaacgat gatcgcccgg cagaaggcca        60
     gacggaaacc agctgcgtgg cctgtcagcg accggacgag gtggaggaca tggtccaatg       120
     cgaccattgc gacacgtgga gccattacac ttgcgctggg gtggatgaga acatcgccga       180
     tcattcctgg gtatgcggcc attgcaccgg ccggcaaagc gacgacgcta tcacggtgca       240
     tagtgcgtcc agtcatcgta gttcatcgtc agtgttctcc gtctgcttaa gtcagatggt       300
     ggaacggcag caactagaac gcacccggat ggagatagag ctacagcgcc gccatttgga       360
     cgagcagcag aagctgatcg acagggtgct cgatggagcc gatgcaaaaa gcaatcatgg       420
     cgacgacttc tccggcggag cagccattgc tctaacttcg ccctcatcca acaagcggct       480
     ctcaacccca ccccctcccg gtgctcctct agtgccgaat ccccgtcggt cattgcctcc       540
     gactgataca ccgaggacta ctgcgccggt tgtcgtttca attccgctct cggcgctcga       600
     accgaatacc gtggaatctc tgaagcgcaa gaaagatcct caagtggcaa tgaaggagct       660
     caagaaaagg gttgagcagt gcgagcagcg cgccaaccca actcctgaac aacttgccga       720
     tcttcaagcc caactggaaa cgtgtcgtaa gctgctggag cgtttccagg ccgataagca       780
     gtccgctgag cgaagccaac aagcggagca gtctcagccg aatccggcgg tagaaacgtc       840
     gcgcgtgccg aaaccaacgg gcaccattcc gaaagtgagt cggacattac ccacaattcc       900
     ggatgaaccc ggagcagtcg gtggaacatt tcggccggat cgtgtctggc cacttaaggt       960
     cccggtaagc caaacgggct ccttctcggt aagtcagcca aatccttcga cacgcccgtt      1020
     ggagaaccca ggtaagcgtc aagccttgag taaattccta gaaaattcga accaatatga      1080
     cattagctat tgccccacga ccaacattcc aacttcccga gtgcagctgc gaaacgacgc      1140
     gcgcccggaa gaaacacaga ctcctccaat ctacccccga gagcagcagc gaaactcatt      1200
     cgcgcactca aacaacgata actcgtacaa tttcgtacgc gaactaaatt caactagtct      1260
     gccatcaagg aatcctccca cgcgcgcagt tgaatcgtct cagacccctc gtcagtcaga      1320
     tagtgctcaa cacaacccag cgattcccaa cctcgatcaa gtacgtccaa cgcaacaaca      1380
     gctagcagct aggcagtccc tggctaagga actccccaga ttctccggcg atcccgctga      1440
     gtggccgata tttatctcca gctaccgcta caccaccgaa gcttgcgggt tctcggatgg      1500
     ggaaaacatg ctccgtcttc agcgatgcct atcgggaccg gctctcgaaa cagtacgcag      1560
     tcgattagtg ctaccagcag ctgtaccaca ggtcatcgaa accctccgaa tgcgattcgg      1620
     caggccggaa ttactgatta atgctctact tcggaaggtt cgagaaatcc cggctccgag      1680
     gtcggacaag ctggaagggc tgatcgactt cggcatggca gtgcaagcgt tgtgcgaccg      1740
     tattgaggct gccaacgaac gtgctcatct cacgaatcca tcgctgcttc aggaactggt      1800
     agcaaagctc cccgcggatc aacggatgat gtgggcaggg tacaaacggg gatttcaaca      1860
     agtggacctt aaaaccttcg gcgactacat ggcggcggtg gtgcaggatg ccacaagtgt      1920
     ggtgaccttc gaaccggacg tgaaacgcag cggcgccctc gaccgtccga agaacaaggg      1980
     attcgtcaac tctcatgcga aggaatcatc ggaggaaaca gtgaaatcat tccacgagcc      2040
     gaaggacgag tcgaagcagt tcaactgtgc atattgcaaa agaggaggtc atcgggttcg      2100
     cgaatgccag gcattccggc agctacacgt tgacgatcgc tggaagcaag tacgatcact      2160
     cggcctatgc cagaattgtt tgtacaacca cggaagacga gggtgccgag gacggaaaat      2220
     ttgtgacatc gacggctgcc aatttcgcca ccatccgctc ctgcattcct ccaagggtcc      2280
     tcaacggtct tcggaggcat tggttcaagt ggcagagaac cacacccatc gtcaccttac      2340
     ttctggaacc ctattccgaa ttattccggt tacgttgcac ggcataaaca agtcaatcaa      2400
     caccttcgcc ttcctcgacg aaggttcgga tctaacctta gtggaaaatg atctggtggc      2460
     ctcgctagga ataaagggga cgcaactacc gttatgcctc cggtggaccg gaaacacctc      2520
     acgagttgag aagaattcac agcagataac gatcgagatc gcaggatttg ggcaggataa      2580
     acgacataaa ctgcttaatg cgagaaccgt gaccaacctt ggcctacccg gtcaaagttt      2640
     ccaagtggat gaggctgcag aacaacacag gcacctgagg gggatcccga ttgccagtta      2700
     tcagaatgcg gtacccaaaa ttctgatcgg ggtggacaat ttgcgactgg ccttaccact      2760
     gaaagtacga gaaggggacg gaacagcacc agtggcagtg aaaaccaggc tggggtggtg      2820
     tgtctatggc ccacgtggaa ccagtagaca ggaatcgtat agctttcacg tttgcgaatg      2880
     ttcctgcgat gatgaactcc acgaagcggt gaagaaattc tatgctgtcg aagaagcggg      2940
     ttcgaaccca actcaaacca tgttgacaaa ggaagatgag agagcgctag ccataatgga      3000
     ggctacgacc cagcgagtgg gcaaccggtt tgaaaccggg ctcatttggc gagaaataca      3060
     agttgagttt ccggacagtt attatgtggc agtgcgtcga ctggagtgcc ttgaacggag      3120
     gatggagcgt gacccggggc tgaaggagaa tctccaccgg caaatcggtg aatatgaaag      3180
     gaaaggctac gcacacaaac tcacagtcgg ggaaatggaa gcagcagatc ccaagagagt      3240
     ctggtacctc ccagtcggag cagtgatgaa tcccaagaaa ccgggaaaag tccgagtcat      3300
     ctgggacgca gcggccaaag tcaacggcgt atcgttgaac agcaagctcc tcaagggccc      3360
     ggatcaactg acatctcttc cggcaattct cttccgtttt cggttgtacg gtgtggcggt      3420
     tacttcggat atccaagaga tgttccatca aatccgaatt cgtgcagaag acagggactc      3480
     tcaacgtttc ttatggcgcg ccaacccgac cgagaagcca acaatctacg tgatggacgt      3540
     agctacattt ggaagcactt gttcaccggc gtcggcgcaa ttcgtcaaga accggaatgc      3600
     agaattacac agtgagctct atccggaggc ggcgaaagcg attgttgacg accactacgt      3660
     cgacgattac ttggcgagtt ttagctcatg ggaacaggca gcaaaagtag cacgcgatgt      3720
     acgattcgtg catggcgacg gcgggttcaa cttgcacaac tggcggtcga atagtgccgc      3780
     ggttctagaa gcactgggcg aggcatgtct tgaatcggac aagcaaataa gtttggttga      3840
     cggcgtgaaa accgaaagag ttctcggaat gctgtggagt ccgtcgagcg acgaattgag      3900
     cttctctacc cagatgagcg aagaagtcca atccctgatc agtacagcca cgagaccgac      3960
     gaaaaggcaa gtgttacgtt gcgtgatgac cctattcgac cctttaggat tgctgtcacc      4020
     atttatcatt cacggaaagg tcttgatcca ggacttatgg cgagtaggca cttcgtggga      4080
     tgagcaagtc aacgaagaaa tctacgcaaa gtggcacaga tgggtgcaga tgataggtta      4140
     catcgcagag atacgaatcc cgcggtgcta cttccaaaac gccgatcaga acacgtataa      4200
     aagctcagag ctccacgttt tcgtcgacgc aagcgaggtt gcgtattctt gcgcgattta      4260
     tctacgtatt ctggatgggg gtgccgaatc acactgctgt ctaatcgccg ctaaatcgaa      4320
     agtggcccca ctgaagccct ggtcaattcc gaggctcgag ctgcaaggct gcgtcttggg      4380
     tgtacgatgg tcgagatacg tcaagtcaga gcacaatatt tccatatcta agatggtgtt      4440
     ctggacagat tccagaacgg ctttggcttg gatcaaatct gatccaagga attatcgaca      4500
     attcgtctcg tttagagtag gggagattct ggagcatacg acctcgaatg aatggcggtg      4560
     ggtaccgtcg aaggccaatc ctgcggatga ggctaccaag tggggtagcg gcccatactt      4620
     cgaccgtaat agcaaatggt ttcgagggcc agattttctg cgactcccgg aaaccgaatg      4680
     gcctcgttcg aatgatcaaa tgtccactac cagcgaagaa atgcgtgcat cgatcctgta      4740
     ccactgttcc tttgagcccc cgatagattt cgccagattt tcgtcgtgga atcgtatgct      4800
     gagaacgata gcgtacgtct tgagattcct gaagaactcg gataagaaac ggccattacg      4860
     cactgggcag ctatcacaaa ctgaactcca gcaagcggag gcggcaatct tcaaagcggt      4920
     gcagcgtgaa acgtaccctg acgagataac ggcattatcc aacaaggcac caaacgaaag      4980
     cgaacaggaa gttataggaa aacatagctc gattttccaa ttaatgccga tgctggacaa      5040
     cagcggtctg ctgcgtgagc gtggacgaat tggctctgct gaagaagtac tgtttgatgt      5100
     ccaccatctc attatcctgc caaggaaaca ccgagctaca gagctgctag tgttagattt      5160
     ccatcaacgt cgccagcacg ggaattctga gacagtggtg aatgaggttc gccagctcta      5220
     caatatccca agacttcgat cggtggtcaa gaagattagc cgagactgcc cactgtgtaa      5280
     agttcgccga gctaggccgg ttattccacc aatggcgcct cttcctgcgg cgcgcctggc      5340
     tcaccatgaa cgagctttca catacaccgg tgtagattat ttcgggccac tgatagtaaa      5400
     attgggaaga tccaacgtga agcggtgggt tgcattattc acctgcttaa ccgtgcgcgc      5460
     tgtccacctg gaagttgcgt attcattgtc gaccgagtcc tgcatatcct gcgtccgccg      5520
     atttgtaggt cggcgaggtc caccctccga gttcttcagc gacaacggga cgaacttcca      5580
     aggagccgat cgagtgctgc gccagcagat tagccaggga ctgtccacga cattcaccag      5640
     taccaatacc aaatggaact tcattccgtc gggagcacca cacatgggcg gagcgtggga      5700
     acgcttggtg cagtcggtta aagcagccat gcaggaggca tattcagagg gaaaactcga      5760
     cgacgagggg ctgcagacgc tggtcgtgga ggctgaaaga ttggttaact caaggcctct      5820
     gacgtatttg ccgcttgaag ctgaagagtc agaagcaatc acgccgaatc acttcttact      5880
     gctgagctcg aacggggtga aaccacgtag cggtgaaggt aatgcttcgg aacatggaca      5940
     ctatcctgag ctggtccgcc gagaaatact gggaaaatct tgggagctga tccaacggca      6000
     gctgaatgtg ttctggaaac gctggttggt tgaatatctt ccggtgatcc gtcgacaacc      6060
     gaagtggttc gaggaagctc gggcgttagt agcgggagac ttggtgatgg tagcggagcc      6120
     aacgaagcga aatggatggg agcgcgggcg aatcgtccgt acagttccaa gcccggacgg      6180
     tcgacaccga aaggcggtgg tgcagatcgg aacgaaaact ctgttgcgac cggtgtcacg      6240
     gttagcccta ctcgacctaa gagatagcag tgaagccccg gaaatctccg gactacaccc      6300
     gggggagac                                                              6309
//
ID   BEL-661_AA-LTR repbase;    DNA;    INV; 735 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-661_AA-I;
KW   BEL-661_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-735
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-735
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 66-66 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 735 BP; 236 A; 132 C; 161 G; 206 T; 0 other;
     tgtcgatgca gaaaatgacg aattggcaac cctgtacacc gggaaggtgg gggcaaacgt        60
     cagtgatgtc agacatcacc gttgacagct gtcaatagag atgatcattt ccgccgaaca       120
     cattgtccag tcaggttgaa cagcagagaa gtcttgattt gcagtgcaca tcgtggtagt       180
     agctcttaaa gtgaaattta ttgaatttgt acctaagttt tatctgaagg tagtgaattt       240
     atttttctaa tagtggtttc aactaattta tgaattttta gtggaattgg agtgaattag       300
     ccccaggaat aacccgagtt gtgactctcg gtaatcctcc agaaatcgag gttagttcag       360
     gttagggtta gactaagaac ttgttaaaat aaccgatgat tcgcatccta ggatagtggt       420
     ccgattcgtc tgttgtccgt gtacctggaa aagagtaaaa tctgaaaaga aacctgaaaa       480
     gaaaagtaag aaaataataa ttagtggtaa aactattgct aactagaaca aatttaggtg       540
     ctgcagcaat cgacactgaa aatcgatcag tggggtgagc gagctaaagc ccaccaaatt       600
     gtaagaaact ggagtctgct tatttagaat gattgtactt accatttatg tatcaattac       660
     agttgaagct aacacaatac aacacagttc gctatcaaaa cggaacgctt ttccttcgca       720
     cccctcctct tgaca                                                        735
//
ID   BEL-662_AA-I repbase;    DNA;    INV; 6338 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-662_;
KW   BEL-662_AA-I; BEL-662_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6338
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6338
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 99-99 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..6337
FT                 /product="BEL-662_AA-I_1p"
FT                 /translation="MEGHHDTSADLCSICHLPGTEMSPMTVCDECRQWEHF
FT                 SCAGVSESVQVRPYNCKHCQKSQSNKPPSRILRSRTRDNKSTKESEGKSAN
FT                 ASEGKSVKVTVAKSTTDTVSKVPSLRSCSTRSSAVRRQLELAEEEARLKQK
FT                 ELEEEEEIRMRELEEEQRQLEEKKKLLEEESRLRQRRLEAEKAHLVKQQFL
FT                 RRESLEKKNEIVLQISERGSVVSSIPNSRDKVSDWLNTQSSCGKTGEKAAK
FT                 TQCTPHAILVPPAPKESQIKQGNPAMEAMPNQNVQYRYAARVTKGVDLVQQ
FT                 TDLFVADLNPERPLHLQSAVQTSPGQRTFQSKGIPSVTIREPFFRYVSSSE
FT                 PVRRENPPPVESFSYRPLPTRDVCSQRVIFSEPPVHQNPSRWNLPFRHQSS
FT                 PIAHLSPMGNVSDSRYPRDDSPRPDSNTCGPTLHNHEPARSCHPLMYRDNP
FT                 ETLSSQQIAARQVVGRDLPTFSGNPTDWPMFISSFEQSTISCGYSNAENLV
FT                 RLQRCLTGHARDAVRSRLLLPASVPHVIDTLRTLYGRPELLIRSMLENIRK
FT                 TPGPRHDRPESILEFGLVVQNFVDHLQAAQQSEHLSNPMLMQELVEKLPGP
FT                 MKMEWAAFKSQQIHSTVLTFGEFMSKLITAASQVSFELPGYQKTPRNEKLR
FT                 VKEKTMVVQTHSFGGSSVTKQVTSTGNSRKAARTCGSCGQEGHKIVECTKF
FT                 KQLSLEERWKLVQGNGLCRTCLNNHGKWPCKSWQGCGYEGCRLKHHTLLHS
FT                 PPSPPSTSHSVNVSSSQLSSGEEQTLFRVLPVVLYGKEKSVTIFAFVDEGS
FT                 QITMLEEKVAKELGVAGPRKPLTLQWTGNVKRDEAKSQEIDLEIAGKNSSI
FT                 RYNLRQARTVSCLVLPAQRLNYGEMSARFPHLKGLPIEDYNQIQPKLLIGL
FT                 DNLRLVVPLKLREGGLYDPIAAKCRLGWGIYGSSPNQSAPRALVNFHTAAA
FT                 KSQDDLLNDQLRDYFTLDDCDVSAAGKILDSEDDKRAKQLLAETTRRTTGG
FT                 FETGLLWKEQDSDFPNTYPMAVRRMKSLERKLRGNSSLMQRVQQQISEFER
FT                 KGYIRKASEAEISSVDTRKTWFLPLGVVINPKKPEKIRLIWDAAAKVDGVS
FT                 FNSHLLKGPDLLTPLPKVLSGFRLFPVAVSGDIREMFLQIKLQERDRRAQM
FT                 FVFRSNPDEPLQTYVINVTMFGSTCSPSSAQYVKNLNAEEFAQEYPRAAIA
FT                 IKDHHYVDDYLDSFKSIDEAVDVVNEVKYVHSKAGFEIRNFLSNEEVVLRK
FT                 IGESERELSKDLALVRAEITESVLGMKWVPNYDVFTYTFAMRNDLQPILDE
FT                 YHTPTKREVLKVIMSLFDPLGFVSFFLVHGKVLMQDVWAAGTNWDEQINDE
FT                 LCLRWRRWIQYFPQLDTVRIPRCYFSTPFPTSFDRLEIHVLVDASDAAYAC
FT                 VAYYRIETESGIQVALICSKTKVAPLKVLSIPRLELKAAVLGTRLLESIQG
FT                 YHTYPISRRVIWSDSSTVLAWIRSEHRRYNKFVAVRIGEILTTTNAREWKW
FT                 VPSKLNVADIGTKWKNGPDFSPANPWFFGPSFLHEPEENWPQQTPSTTTIE
FT                 ELRESHTHMAVSPFIDTTKFSSWSRLHRAMAFALRFVDNIRLKQKGSMLRL
FT                 GALHQDELKRAEEALWKMAQAEVFPEEIAVLSATQGSSEAYHGRIAKSSPI
FT                 YKTWPYLDQRGVLRMRGRIGAAPFAPFEAKYPAILPRQHFMTFLIADWYHR
FT                 LYRHANRETVANEMRQRFEISKLRSLIEKVSKKCMMCRLRKAKPSPPVMAP
FT                 LPIARLQPFIRPFTYVGLDYFGPVLVKVGRSQVKRWIALFTCLTIRAVHLE
FT                 VVHSLSTQSCIMAVRRFIARRGSPAEFYTDNGTCFQGASRELVREQVLARN
FT                 DALATVFTNANTKWRFIPPAAPHMGGAWERLVRSVKVAVGAITDAPRRPDD
FT                 ETLETIMLEAESMINTRPLTYIPLESADQEALTPNHFLLGSSNGHKIQPDG
FT                 VIEGQTALRSSWKLAQAITSGFWTRWIKEYLPVITRRGKWVEEARDLVVGD
FT                 LVLIVGGSTRDQWIRGRVEEVIPGRDGRVRQAVVRTASGILRRPAAKLALL
FT                 DVTASSKPDQSSREPGSSPGFTGGG"
XX
SQ   Sequence 6338 BP; 1768 A; 1507 C; 1568 G; 1495 T; 0 other;
     tcctttaaga tttttaggac gtgggattag gatggaagga catcacgata cgtcggcgga        60
     tctgtgcagc atatgccacc tcccaggcac agaaatgtcc cccatgactg tttgtgatga       120
     atgtcgacag tgggaacatt ttagttgtgc gggtgtgagc gaatccgtcc aagttcgccc       180
     ttacaactgc aaacactgcc agaaatcgca gtctaacaaa ccacctagtc gcattctgag       240
     atcacgaacc agagataata agtctacgaa ggagtcagaa ggaaagtcag cgaacgcgtc       300
     ggaagggaaa tccgtcaaag taactgtggc caaatcaact actgataccg tgagtaaggt       360
     accgtcgctg cgcagctgta gcactcgatc gtccgctgtg cggagacaat tagagctggc       420
     agaagaagaa gcaaggctaa agcaaaagga gcttgaagaa gaggaggaga ttcgtatgcg       480
     tgagctcgag gaggagcaac gccaattaga ggagaagaag aagctcttgg aagaagaatc       540
     acgtctgcga caacgcagat tggaagcgga aaaggcacac ttggtaaagc aacagttcct       600
     tcgtagggag tcgctcgaga aaaagaacga gattgttctg cagatatcgg aacgaggcag       660
     cgtcgtgagt tccattccaa actcgcgcga caaagtgtcc gattggttga atactcaatc       720
     ctcttgtggg aagaccggag agaaggcagc gaagactcaa tgtacccctc atgccatact       780
     ggtccctccg gccccaaaag agtcgcaaat caagcaagga aatccggcaa tggaggcgat       840
     gccgaaccag aacgtacaat atcgatatgc cgcacgtgtt acgaagggtg tagatttggt       900
     acagcaaacg gatctgttcg ttgctgatct aaaccctgaa aggccacttc atctgcagtc       960
     agctgttcaa acatcacctg ggcaacgcac ctttcaatcg aaaggaatcc cctcggttac      1020
     gatcagagaa ccattctttc gatacgtgtc gagctcagaa ccagttcgtc gagaaaatcc      1080
     acctcccgtc gaatcgtttt cataccgtcc gcttccaacc cgtgatgtgt gttcacaacg      1140
     cgttattttc tctgaaccgc ccgttcacca aaaccctagt cgttggaatc tcccattccg      1200
     acatcaatct tctcctatag cgcatctttc gcctatggga aatgtttcgg attcacgtta      1260
     tcctcgagac gacagtccac gacccgatag taatacttgc ggtccaacgc ttcataatca      1320
     tgagccagca agaagctgcc atcctttgat gtaccgggat aacccagaga ctctgagctc      1380
     ccagcaaatc gccgcccgac aggtagtcgg aagggattta ccaacattca gtggcaaccc      1440
     aacagattgg ccgatgttca taagcagttt cgaacaatcg acaatttctt gtggatactc      1500
     caacgccgaa aatctcgttc gtctacaacg gtgtctcacc ggacacgcac gggacgcggt      1560
     acgcagtaga ctcttgctgc cagctagcgt accacacgta attgacactc tgcggacgct      1620
     ctatggacgg ccggaactat taatcaggtc aatgctcgag aatattagaa agacaccggg      1680
     gcctagacac gataggccag aatccatact tgaattcggg ttagtcgttc aaaactttgt      1740
     ggaccatctt caggcagcgc aacagagtga acatctctcg aatccaatgc tcatgcaaga      1800
     attggtggaa aagttaccgg gaccaatgaa gatggaatgg gcggccttca agagtcagca      1860
     gatccattca acggtattga catttgggga gtttatgtca aaattgatta ctgcggccag      1920
     ccaggtgagc ttcgaactgc ctggttatca aaagactcca aggaatgaga agttgcgagt      1980
     taaggagaaa accatggttg ttcaaacaca ctcattcggt ggttcttctg tgaccaaaca      2040
     agtaacgtcg acgggaaatt cgcgcaaagc agctcgaaca tgcggatctt gtggtcaaga      2100
     aggacacaaa atagtcgaat gcacgaaatt taagcagctg agtctagagg aacggtggaa      2160
     attagttcaa ggcaatggat tatgcaggac atgtttaaac aatcatggaa aatggccgtg      2220
     taagtcgtgg cagggatgtg gttatgaagg atgtcgtctc aagcaccaca cactccttca      2280
     ttcccctcct tcaccgccgt caacttcaca ttctgtgaac gtttcatcca gtcaactttc      2340
     ttctggtgag gaacaaacgt tattccgcgt gctgcccgtt gtcctatatg gaaaagagaa      2400
     aagcgtaacc atatttgctt tcgtcgatga aggttcccaa atcactatgt tggaagaaaa      2460
     ggtcgctaag gaacttggcg ttgcaggccc taggaaaccg ctcactttac agtggactgg      2520
     gaatgtgaaa cgcgatgagg cgaagtctca agaaatcgat ctggagatag cggggaaaaa      2580
     cagtagcatc cgttataatc tgcgtcaggc tcgcacggtg agttgtctgg ttctgcctgc      2640
     tcagcggctg aactacggag aaatgagcgc gcgttttccg catctaaaag gtcttccgat      2700
     cgaggactac aatcaaattc aaccgaaact gttaattggt ttggacaatc ttcgcctagt      2760
     tgtcccattg aagctacgtg aaggagggtt gtacgacccc attgccgcaa agtgtcgtct      2820
     tggctgggga atttacggta gctcaccaaa tcagtcagca ccaagagctc tggttaactt      2880
     ccacactgct gcagcaaaaa gtcaagacga tttgctcaat gatcagctgc gagattactt      2940
     tacacttgat gattgtgatg tctccgctgc tggtaaaata ttggattcgg aggacgacaa      3000
     aagagcaaag cagctacttg ctgagacaac tcgacggaca actggtggat tcgaaaccgg      3060
     tctgctatgg aaggaacagg actcagattt ccctaatacc taccctatgg cagtccgacg      3120
     gatgaagtct ttggagagga agctgcgtgg taattcgtcc ttgatgcaga gagtacaaca      3180
     gcaaataagt gaatttgaaa ggaaaggtta tatacgaaaa gccagtgaag cagaaatctc      3240
     ctccgttgat acgcggaaaa cctggttcct tccccttgga gttgtcatca atccgaagaa      3300
     accagaaaag atcaggctca tctgggatgc cgcagcgaaa gttgacggag tttcattcaa      3360
     ctctcacctg ctaaagggcc ccgacctact aactcccttg ccgaaagtgc tcagtggttt      3420
     tcgtctgttc cctgttgcgg tctcgggcga cataagggag atgtttcttc aaattaaatt      3480
     gcaagaacga gaccgaaggg cgcagatgtt tgtcttccgt agtaatcctg atgaaccatt      3540
     gcaaacctac gttatcaacg tcactatgtt cggatccact tgttcaccgt catcagccca      3600
     atacgtgaag aatctgaacg ctgaagagtt tgcccaggag tacccacgag ctgctattgc      3660
     cataaaagat caccactacg ttgatgacta cctggacagc tttaaatcta tcgacgaagc      3720
     tgttgacgta gtcaacgaag taaaatatgt ccactccaag gcagggtttg aaatccgaaa      3780
     cttcctttcc aatgaagaag ttgtgctgcg aaaaatagga gaatctgaac gagaattatc      3840
     gaaggatctc gcacttgtcc gcgcggaaat aaccgaatct gttctcggca tgaagtgggt      3900
     gccaaactac gacgttttca cctatacctt tgcgatgcga aatgatttgc agccgattct      3960
     tgatgagtac catacaccaa cgaaacgaga ggttctgaag gtgataatga gtttgttcga      4020
     ccctttaggc tttgtatcgt tctttctcgt gcatggtaaa gtgctgatgc aggatgtatg      4080
     ggccgccggg actaattggg acgaacaaat caacgatgaa ttgtgtctgc gttggcgccg      4140
     atggatccag tacttcccac agctagacac agtgcgaatc ccgcgatgtt actttagcac      4200
     gcctttcccc acaagcttcg atcgactaga gattcacgta cttgtcgatg ctagtgacgc      4260
     tgcttacgca tgcgtagcct attaccgcat tgaaaccgaa agcggtatac aggtggcgct      4320
     catttgttcc aaaactaaag tagctccact taaggttttg tcaatccccc gattggaatt      4380
     gaaagcggca gttctaggaa cccgtcttct cgaatctatt caaggctacc acacctatcc      4440
     aattagcagg agagttatct ggagtgattc cagcactgta ttagcctgga tacggtcgga      4500
     acatcggcgg tacaacaagt ttgttgcagt acgtattggc gaaattctca caacaaccaa      4560
     tgcccgggag tggaagtggg tcccatctaa gctgaacgta gctgatattg gcacgaaatg      4620
     gaaaaacggg cctgatttct cacctgctaa tccatggttt tttggccctt catttcttca      4680
     tgagccagaa gaaaactggc ctcaacaaac tccgagtaca actacgatag aagaacttcg      4740
     agagagtcac actcacatgg ctgtctcacc gtttatcgat actacaaaat ttagctcttg      4800
     gtcacgactt catcgcgcaa tggcatttgc gcttcgattc gtggacaata tacgcctcaa      4860
     acaaaaagga tcgatgcttc gcttaggagc acttcatcag gatgagttga agcgagccga      4920
     agaagccctc tggaaaatgg cacaagctga agtctttcct gaagagatag ccgtcctttc      4980
     tgcaacgcaa gggtcatcag aagcttatca cgggcgtatt gcaaagtcaa gtccgattta      5040
     caaaacctgg ccgtatcttg accaaagagg agtacttcga atgcgtggcc gaattggtgc      5100
     tgctcccttt gcgccgtttg aagcgaagta ccctgccatc cttccaaggc aacactttat      5160
     gacgtttctg atagcagact ggtaccaccg tctttatcgc catgctaacc gtgagaccgt      5220
     cgcaaatgaa atgcgtcaac gattcgagat ctcaaaacta cgctctttga ttgaaaaggt      5280
     gtctaagaaa tgtatgatgt gtcgattgag aaaagcaaag ccaagccccc ctgtgatggc      5340
     accacttcct atagcccgac ttcagccgtt tatccgtcct ttcacttacg ttggacttga      5400
     ctatttcgga cctgtactgg taaaagtcgg acgtagtcag gtaaaaagat ggatagcttt      5460
     attcacgtgt cttactatcc gtgctgtgca tttagaggtc gttcacagtc tatccaccca      5520
     atcatgtatt atggctgtac gtcgtttcat cgcccgccgc ggctccccag ctgagttcta      5580
     cacggacaat ggtacttgct tccagggtgc cagtagggaa ttagtacgag aacaagttct      5640
     agccaggaac gacgctctag ctaccgtttt cacgaacgcc aatacaaaat ggcgttttat      5700
     accgccagca gccccacata tgggaggagc atgggaacga ttggtacgat cggtaaaagt      5760
     agcggtagga gctattactg atgcccctcg cagaccagat gacgagactc tagagacgat      5820
     tatgctggaa gccgaatcga tgatcaatac ccgaccgctc acgtacatcc ctctcgaatc      5880
     agcggaccaa gaggcgctga ctcccaacca ctttttgttg gggtcttcca atgggcacaa      5940
     aattcaacca gacggtgtaa tcgaaggaca gacggctttg cgaagtagct ggaagctagc      6000
     acaagccatc accagtggat tttggactag atggatcaag gagtatcttc ccgtaattac      6060
     acgaagagga aagtgggtcg aagaagcgcg ggacttagtt gtcggagatc tggtccttat      6120
     agttggcgga tcaacaaggg accagtggat tcgaggccgc gtagaggaag tcattcctgg      6180
     acgggatgga agagttcggc aagcagtcgt tcggacagct tcagggattc tacgacgacc      6240
     agctgcaaaa ctagcgttgc tcgacgttac ggcgagtagt aaacccgacc agagttccag      6300
     agaaccagga agttcaccag ggtttacggg agggggga                              6338
//
ID   BEL-662_AA-LTR repbase;    DNA;    INV; 696 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-662_AA-I;
KW   BEL-662_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-696
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-696
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 58-58 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 696 BP; 246 A; 124 C; 119 G; 207 T; 0 other;
     tgttacgacg agaccccccg ttgcagctca actgtggcgt agagatctag ataggccaac        60
     aacagtaccg atcgctgtct tgctgtcgct gatgcgagga aacgtctgtt gaacaatacc       120
     tagttagaaa tcaataacaa tgatcatgca ttcttgaaat tcatttcgat tgcctaatac       180
     tattcttaaa gataataatt caaacctaaa agttaatatt cgtgatctta atctacatct       240
     atttatgctt aaaattgaat tagtggcaag tcacaaacga atttattgaa atagtacggt       300
     ttattataca tgcgagagtg aaatcaatga attaaaacta tgatcttatg tattcttaac       360
     tctagggtaa aagggaggac atacaaagct acacattaaa acttaagttg actacccatt       420
     cgtgtacaca ggaaattgag ttgtaagtac gataaaatta ttgtaatagc catagttaaa       480
     agaacttcaa attgatatag tgatccagac catttgaccg acaagtcgtg atacgatctt       540
     gagatccaag gttcagctaa aaatgtaagt cacaattaac tcaagttcta cgaaaaatat       600
     taattaaacg atcgttttag cttaaagctt actctcacca agatactggt attcggtttg       660
     ctgttaagaa gttgaagaat cttccccacc acaaca                                 696
//
ID   BEL-663_AA-I repbase;    DNA;    INV; 6267 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-663_;
KW   BEL-663_AA-I; BEL-663_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6267
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..6265
FT                 /product="BEL-663_AA-I_1p"
FT                 /translation="MSNESLASDGKCSLRKVSSIDGEGASCGTCRRVDTSR
FT                 MVQCDECDVWHHYSCVDVDDSIRDRDWSCNRCLRTSLEKQRCALSEQMARL
FT                 EQQQKQWQREQQKHLEQMKELQKLEQRQKLQELQQQKQEQIDQLQIGMLQL
FT                 QQPSSLTRVATVGFELPSKSTGVIPKQHQQQSKSAGKVVMINEQPNAEPLA
FT                 SSTANNVKSAARSDKASSKSSRRSMKLLELQAKALEARQALEMKQLEERLA
FT                 LEQEMLEISESDMESVTSLDKINEWLEKTDNVGRERQNSMDDTPLPVYDEL
FT                 LRKPAVPPIQESHSGKRTPAVSFPYQQQVDNSALLHSCASEQPNGNSMPGV
FT                 RYMEHHQAGGPTARIGSSYQPTFNRYQVAASSLPSVPVYTIASQQPIMTTA
FT                 YPAMTYAQLPVRSMASYSQSVGPPPMMTSTPQQNLNVIQQCSDPVELNSSH
FT                 LSARQTVKDLPKFGGDPEDWPRFIAAYERTSRMCAFRNDELLDRLERSLHD
FT                 KALNAVKSLLLHPDNVPVILHRLKTLFGNPESIIETMIHRIRLMPPPKADK
FT                 METIVDFGIAVQNLCATIQVCQMDERLYNVALLQELVDSLPSTLKMKWAFY
FT                 RKEIGTATLLEFNNWLGEMVEALSQVIRPTVWTKLPKSETKSERKVRKDEV
FT                 YVHAHSTTDPVSEDPKACLACGDECDSLEKCSNFLNMALNARWALVNEKKI
FT                 CRKCLNKHFKTCERKIPCNQNGCAFLHHWLLHDENKHQKQTSSTPAQIASV
FT                 NAQYSSLGKVLLKYIRVTIHGKGRSIETYAFLDAGSTSTLMEHSLWEELNL
FT                 RGEKSPLCISWTGGQGRYEQDSVVFSTEIAGALNPEQCYRLSEVHTVRSLD
FT                 LPAQSMCVTDLAKHFQHLSGLPIESYAEVKPRILLGVDNSRLEYPLDSREG
FT                 SENQPTAVLTRLGWVIYGPCLTSEHTKAKEDVSYSFHVCQCDGLHAALKNY
FT                 FSTDSLGIQLSGEPLVSKDDERALKLLRTNTILQNMRYETGLLWRYEQFRL
FT                 PESKAMALKRHDCLNKRMVREPKLSKVLQEKILDYQQKGYIRKLSAQEEAT
FT                 HTGRRWYLPIFPVVNPNKPDKLRIVWDAAAKVGNLSLNSFLLKGPDQVTPL
FT                 QYVLLRFREYRTAVSGDIREMFHQVRINPNDQHCQRFLWNDGDPGKAPSTY
FT                 VMEVMTFGASCSPSSAQYIKNTNAERFRSQLPKAVEAICDDTYVDDMLYSV
FT                 ESEAEAIKIAHDVRRIHAEGGFEIRGWLSNSKKVVDSMGEQNSPHKDLNKT
FT                 GEMATEKVLGMWWDTINDTFTFKMPKRCKQELLSGEQVPTKREVLKILMSI
FT                 YDPLGLLANVLMYLKVLLQDIWRSNIGWDEPIADEQLEKWRTWLTVLHQVE
FT                 NVAIPRCYRANTTCSIDTNEVQLHIFVDASENGYAAIAYLRFEESTNVECA
FT                 FVTAKTRVAPLKYMSIPRLELQAAVIGTRLAKTLEETHRMPVKKRFFWTDS
FT                 RDVLCWIQSDHRRYSKFVGARVGEILENTELSEWFWIPTKLNVADEGTKWQ
FT                 RIPDLSSSSRWFKGPDFMWQQQSAWPNQPTSYGTTTTERNVSVNNHAERTL
FT                 ALNFTKYSNWRKLLRITAYVLRFARNIKASLQNQSCFTGILKQSELVEAER
FT                 CIYRQVQLEVFSEEVSILKKSEGVNGRTVAPVPKSSALYKLSPFLDEHGVL
FT                 RKSGRAAGCQFIDVSAIHTVLLPKKHIVTTLIIQFTHERFHHLNHETVVNE
FT                 LRQKYWIPQLRRVCNKVRRECQYCKNARARPQPPIMADLPPARLAAYSRPF
FT                 SYTGIDFFGPMQVVVGRRTEKRWGVLLTCLVIRAIHIEIAHSLNTSSCIMA
FT                 VRNFMARRGTPIELFSDRGTNFMGANRELIEALQKLDQNRLMQEFVTPNTK
FT                 WTFLPPSSPHMGGSWERLVQSVKKILNNMHLPRLPTDEVLRNSLLEVENII
FT                 NSRPLTYVPIEDAENEALTPNHFLLGTSGGSKPLVPYDDNLATLMNSWKTS
FT                 QVYANMFWKRWLREYLPTISRRTKWYYPVKPIQIDDVVVIVDPDLPRNLWP
FT                 KGRVVDVNRKNGQVRSATVRTTSNIYVRPAVKLAVLDVGATESTQVSGPCV
FT                 LGG"
XX
SQ   Sequence 6267 BP; 1860 A; 1394 C; 1560 G; 1453 T; 0 other;
     aattaaattt cccgtttaat tcggaatgtc gaacgaaagc ctagcgagcg atgggaaatg        60
     ttccctgaga aaagttagtt cgattgatgg tgagggggcg agttgcggga cctgtcgtcg       120
     cgtcgatact agtcggatgg tccaatgtga tgagtgcgac gtgtggcatc attatagttg       180
     tgtagatgtc gacgatagta tccgtgatag agattggagc tgtaataggt gcctaaggac       240
     atcgctggag aaacagagat gtgcattgag tgaacagatg gcgcgcctcg agcagcagca       300
     gaagcagtgg caacgagagc agcagaaaca cctggagcag atgaaagaac tgcagaagct       360
     tgagcagcgg cagaaactgc aagagttgca gcagcaaaag caagagcaga ttgatcagct       420
     gcaaataggt atgttgcagt tgcagcagcc aagttcgctg acgagagtag ctacagtggg       480
     cttcgaattg ccttcgaaat cgaccggcgt cataccgaag cagcatcagc agcaatccaa       540
     aagtgcagga aaagtggtaa tgataaatga gcagcccaat gcagaaccgt tggccagctc       600
     cacagccaac aatgtaaagt cagctgcaag gagcgacaaa gcatcttcga agtcttcgag       660
     gcgttcaatg aagttgttgg aactacaagc gaaggcattg gaagcaagac aagcgttgga       720
     aatgaaacaa ctcgaggaga gattagcact ggagcaagag atgttggaaa taagtgagtc       780
     cgacatggaa tcggttacca gtcttgataa aatcaacgag tggctggaga agactgataa       840
     cgttggcaga gagcgacaaa actcgatgga tgatacgcca cttccagtgt acgacgaact       900
     cttgcgaaaa ccagctgtac cgccgatcca agagagtcat tcaggcaagc gaactccagc       960
     cgtatcattt ccttaccagc aacaggttga caactcagct ttgcttcact cgtgtgcttc      1020
     agagcaacct aacggaaata gtatgcctgg tgtaagatac atggaacacc atcaagccgg      1080
     aggacccact gcgagaattg gatcaagtta tcagccgaca ttcaacagat accaagtagc      1140
     agcctctagt ctgccatcgg ttcctgtgta caccatagca tcgcagcaac caataatgac      1200
     gactgcttat ccggcgatga cttatgcgca actacctgtt cgatccatgg catcttactc      1260
     acaaagtgtc ggaccaccac cgatgatgac gtcgactccg cagcaaaatc tgaacgtcat      1320
     tcagcagtgc agcgaccccg tagagctgaa cagcagtcac ctatctgcaa gacaaacagt      1380
     aaaggatctg ccgaagttcg gcggcgatcc tgaagattgg ccgcgattca ttgcggcgta      1440
     tgaacgcact tctagaatgt gtgcttttcg gaatgatgag ctactcgatc gccttgaaag      1500
     gagcctgcac gacaaggcgt tgaacgctgt aaaaagtctg ctacttcatc cggacaacgt      1560
     tccagtaatt ttgcaccggc tgaaaacact tttcggaaat ccggagtcca tcatagaaac      1620
     aatgatccat agaattcgat tgatgccacc accaaaagct gacaaaatgg agacaatcgt      1680
     cgacttcggc atcgcagttc agaatttgtg tgcgaccatt caagtgtgtc agatggatga      1740
     gcgactgtat aatgttgctt tgcttcaaga gctcgttgat agccttccat cgacgttaaa      1800
     aatgaagtgg gcattttatc ggaaagaaat tggaactgct acgttgctcg aattcaacaa      1860
     ttggttggga gagatggtgg aggcattgag ccaggtgatc agaccaactg tttggaccaa      1920
     actgccgaag tcggagacca aatcagagag gaaagtccga aaggatgaag tttacgtcca      1980
     tgcgcactcc acaaccgatc cagtctcgga agacccgaag gcctgtttgg catgcggaga      2040
     tgaatgcgac tccctcgaaa aatgcagcaa cttccttaac atggcactaa atgctcggtg      2100
     ggcgttggtg aacgagaaga agatttgtcg aaagtgtttg aataagcatt ttaaaacctg      2160
     tgaaagaaag ataccctgca atcagaatgg atgcgccttt ctacaccact ggctattgca      2220
     cgatgaaaac aaacatcaga agcagacatc aagcactcca gcacagatag cgtcagtcaa      2280
     cgctcaatac agttcgctgg gaaaagtact gttgaagtat attcgtgtaa cgatacatgg      2340
     taaaggaaga tccattgaaa cttacgcctt tctcgatgcg ggctcgactt caactctaat      2400
     ggagcacagc ttgtgggagg agcttaacct gcgcggtgaa aagtctccat tgtgtatttc      2460
     ttggactggt ggtcaaggaa gatatgaaca agactctgta gtattctcaa cggaaatagc      2520
     cggcgccctt aaccccgaac aatgctaccg tctttcagag gtacatacag tgcggagcct      2580
     tgatttgcca gctcaatcaa tgtgtgtaac ggatctggca aaacatttcc agcatttgtc      2640
     tggactaccc atagagtcat acgctgaagt gaaacctcga attctgctgg gcgttgacaa      2700
     ctcaagactg gagtatccac tggactccag agaaggtagt gaaaaccaac cgacggcggt      2760
     gctaacacga ttgggatggg tgatctacgg tccatgtttg acttctgaac acactaaagc      2820
     gaaagaagac gtctcgtata gtttccatgt ttgccagtgt gatggtcttc atgcggcgct      2880
     caagaattat ttttcaacgg acagcctcgg aattcagctt tctggagagc ctttggtatc      2940
     taaagatgat gaacgagcac tgaagttatt gcggacaaac acgattctcc agaatatgag      3000
     gtacgaaacc ggtctactat ggcgttacga acaattccgg ctaccggaaa gcaaagccat      3060
     ggccttaaaa cggcatgatt gtctgaacaa gcgcatggtt cgagaaccaa aattatccaa      3120
     ggttcttcag gagaagatcc ttgactacca acagaaagga tatatacgta agctttcggc      3180
     acaagaggag gcaacacaca ccgggcgcag gtggtaccta ccaattttcc ctgtagtaaa      3240
     tcctaataaa cctgataagc tacgaatcgt ttgggatgct gcggcgaagg tgggaaacct      3300
     ttcacttaat tcgtttctgc taaaaggtcc tgatcaagta actccacttc aatatgttct      3360
     tttacgcttc cgggagtacc gtacggctgt gtcaggagat attcgtgaaa tgtttcacca      3420
     agtcagaata aatcctaatg accaacattg tcagcggttt ctgtggaacg atggcgatcc      3480
     tggaaaggct ccttcaacat atgtgatgga agttatgacg tttggtgcga gttgttcgcc      3540
     gagcagcgca cagtacatca agaatacgaa tgctgaaaga ttcagaagcc agttaccgaa      3600
     agcggtggaa gcaatttgtg acgacacgta cgtggatgat atgctctata gcgtcgaatc      3660
     tgaagcagaa gccatcaaaa ttgcacatga tgttcgacgc atacatgccg aaggagggtt      3720
     tgagattcga ggttggctat caaactccaa gaaagtagtt gattctatgg gcgagcagaa      3780
     ttctcctcac aaagatctga acaagactgg agaaatggca acagaaaaag tattaggcat      3840
     gtggtgggat acaatcaacg atacatttac attcaagatg ccgaagagat gtaagcaaga      3900
     gttgttatcc ggagagcaag ttcccacgaa gcgggaggtt ttaaaaatac tcatgtccat      3960
     ttatgatcca ctgggacttc ttgcaaacgt tttaatgtat ttaaaggtcc ttctgcaaga      4020
     tatttggcgg tccaacatag gttgggatga accaatagcc gatgagcaat tagagaagtg      4080
     gaggacatgg ctcaccgtgt tacatcaagt ggagaatgtc gctattccca gatgctatcg      4140
     ggcgaacact acatgttcga ttgatactaa cgaagtacag ttacatatct tcgttgatgc      4200
     aagcgagaat ggctacgcag caatcgccta tcttaggttc gaagaaagca caaatgtgga      4260
     gtgtgctttc gtcactgcaa aaacccgtgt cgctccttta aaatacatgt cgattcctcg      4320
     attggaactc caagccgcag tcattggaac gcgtttagct aagacactcg aagagactca      4380
     tcgtatgccg gtgaaaaaac ggtttttctg gacggattca agggacgttc tgtgctggat      4440
     acaatcagac catagaagat acagcaagtt cgttggcgcc agagttggtg aaatcctaga      4500
     aaacactgag ctatcggaat ggttctggat tccaaccaag ttgaatgtag ctgacgaagg      4560
     aacgaagtgg caaagaattc ctgatctttc ctcctctagt cggtggttca aggggccaga      4620
     tttcatgtgg caacaacaaa gtgcttggcc taaccagcca acaagttatg gaacaactac      4680
     aacggaaaga aatgtttcag ttaacaacca tgccgaacgg acactcgcct tgaatttcac      4740
     caaatactcg aactggagaa agcttttgcg aattaccgct tacgtccttc gattcgccag      4800
     gaacataaag gccagtctcc agaatcagtc atgtttcact ggaatcctca agcagtcgga      4860
     gcttgtcgaa gcggagcgtt gcatctaccg gcaggtgcag ctagaagtat tcagcgaaga      4920
     agtatcgata ctaaagaaaa gtgaaggtgt taacgggaga acagtggccc cggttcccaa      4980
     gagcagcgca ctctacaaac tttcaccatt tctagatgag catggagtgc ttcgtaaaag      5040
     cggacgtgct gcaggatgtc agtttatcga tgtgagcgct atccatacag ttttgttacc      5100
     aaaaaagcat atagttacaa cactcatcat acaattcacc catgagcgtt ttcaccacct      5160
     taaccatgaa acggttgtta acgaattgcg gcagaagtac tggattccac aactgagaag      5220
     ggtttgcaac aaagttagac gagagtgtca gtactgcaag aatgcgagag cacgaccaca      5280
     gccgccaatt atggccgatc ttccaccagc tcgattagca gcctactctc gtccattctc      5340
     ctatactgga attgatttct ttggaccaat gcaagttgtt gttggaaggc gcaccgagaa      5400
     gagatggggc gtattgctga catgtcttgt aatacgggcg atccacatcg agattgcaca      5460
     ctcacttaat actagctcat gtattatggc cgtgcggaat tttatggcca gacgaggaac      5520
     gcctatagaa ctgttcagtg acaggggaac gaacttcatg ggcgccaacc gagaactgat      5580
     tgaagcactc cagaaactcg atcagaatag acttatgcag gagtttgtaa caccaaatac      5640
     caagtggacc ttcctacccc caagcagtcc acacatgggt gggagctggg agagactggt      5700
     gcagtctgta aagaaaatac tgaacaacat gcatctccca cgattaccta ctgatgaagt      5760
     ccttcggaac agccttttgg aggtcgagaa tatcatcaac tcgcgccccc tcacctatgt      5820
     tcctattgaa gacgctgaaa atgaagcatt aacgcctaat cattttttat tgggcacgtc      5880
     cggaggttca aaacctttag tgccctatga tgacaacctc gctacgctca tgaacagttg      5940
     gaaaacatca caagtctacg ccaacatgtt ttggaaacgc tggctacgag agtacttgcc      6000
     aacgatcagc cgtcgaacaa agtggtatta cccggtcaaa ccgatccaga tcgacgatgt      6060
     cgtagtgatc gtcgacccag acctcccaag gaacctttgg ccaaagggtc gtgtggtaga      6120
     cgtcaataga aagaatggtc aggtacgtag tgcaacggtg cgaaccacgt ccaacatcta      6180
     cgtacgtcct gcggttaagc ttgcagtttt ggacgtcggc gcaacagaga gtacgcaggt      6240
     atctggaccc tgtgtactgg gggggac                                          6267
//
ID   BEL-663_AA-LTR repbase;    DNA;    INV; 742 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-663_AA-I;
KW   BEL-663_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-742
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-742
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 67-67 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 742 BP; 274 A; 129 C; 133 G; 206 T; 0 other;
     tgttccgcaa tctacgaacg cgcctccgtt accaatgagc ctcaacctgg atgtaccgtc        60
     accaatacag ggtaatgcga gtgatagtag agagaaccgt caaatacgaa aaaccgtgtc       120
     taccgatcaa aaggatagag aggagaaatg attcaaaaca aaacgttcac tggtactacg       180
     tgctacaatc taaactaaag tgaattatta ttacaattac gttatctaaa tcatatagtt       240
     aatttctata attgaattcg cgcacctaaa gcttaaattt agtgagaaga attaaactta       300
     cactgtgcaa gaaggtaatt tgagcctaaa aagaatgatt attatttcta tagtttaacc       360
     tgaaatccta acacaggaca acagtatagc agttacagca gttgttactg aaatttagct       420
     agatccatta tatgaagcta tcttaaacgc tcaggtaaaa taatgtaatg aaaaagcttt       480
     ggcaaagaaa ataattaacc ttaacattca gggtctacga agataccgta cgctagcaca       540
     ttccggacag aacgggactg cgataagaca ctaaacgtaa gtaaattgat agacttaatc       600
     ttatgcatct taaccataga aaattactaa aatgtgtata atctgcaggg gaaatttaac       660
     aatacaaacc aataaagtta tttcggtacg tttgtttaaa ttatcggaag tctgctgttt       720
     attgttgccg tgtccgggaa ta                                                742
//
ID   BEL-664_AA-I repbase;    DNA;    INV; 6368 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-664_;
KW   BEL-664_AA-I; BEL-664_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6368
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6368
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 100-100 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..6343
FT                 /product="BEL-664_AA-I_1p"
FT                 /translation="MMSASNPNLTMQEGVNSCKSCNRPDSVEDMVACDKCN
FT                 SWWHFSCAGVQASICDRSWRCPNCSTFCGTIVSDHSNASSARLRLKQLEEA
FT                 KALEDKIRQEQAEREREFLAAKHQLESEIEARQSVGGSLRSHESHRTRRSR
FT                 VGTWVAEQDFTIGNRAIENHPSEAGKTSTPILTGQVGTGATTKILPLPQLK
FT                 AHVQQQETPTEHQHSGATRADEQANLPPPNTPLGLPKQLLPPTKSVGPLEL
FT                 PCLPAKPSHYPEHKIPMSGPGTATNPMNTAEAAYCPNNAVLLQHPSLKATN
FT                 TVASSYPELPAPPPVHSLGTLVQQLPSASLPVXTASRLPQMSSMYTTKPFA
FT                 PPLSMFPPSNPMQWRNQPAPPGNSSRLTFVASKHPETTEHIMGPTRQTDHI
FT                 EQDHSWLNPSDPLNRDADFGHRPTLGNRLPPQASSQHNAQGDPTYHSWYQQ
FT                 PMPPYWQPQHSMQSSLGGLINPQQLAARHVVSRELPKFSGDPLEWPMFLSA
FT                 FESTTVMCGIQPDENLARLQKCLVGKAREKVHSILTLPEAIPEIIKTLREE
FT                 CGRPDQLVHCLMSKIRNAPAPNVNKLDTLVTFGREVRNLVTYIEAANLQAH
FT                 LSNPMLLSELISKLPPSIRLDWGLHTQRVPDVTLKAFSDFVSSIKAAACQV
FT                 SFPFESNSQDDMSRSGRKKEKSGYVNPHSAEVNIRDGASSTKPQKQQKPCL
FT                 MCQRGDHKIRNCNKFSSLTITERWNLVDQQNMCQRCLTCHGKWPCRTSQPC
FT                 GMDGCGDMHHKLLHPGKPQADVPRSKGHSSSGFVTTHHGKQHGTLFKILPV
FT                 TLSHNGKSVTTFAFLDDGSNVTLLENSIANMLDLDGEETSLCLQWTSDVTR
FT                 KESVSKRVQVCITEGDGKSQHVLSQVQTVENLSLPRQSLDYAEISGTFPHL
FT                 RGLPIQSYTEAVPKILIGADNARLKLPLNKRERRDEEPVAVKTKLGWTIFG
FT                 GRRVNHTDKCAMVHVCDCSVDQRLHDLVKDYFEMDQLGVTDTSILESDENK
FT                 RARRILENTTRRTESGRFETGLLWKSDEVQFPESYAMAERRLKCLERRLQA
FT                 DPELRRNIEAQIVEYQEQGYAHKATETDLREADPSRVWYLPLGIVRNPRKP
FT                 NKMRLVWDAAARVKGVSLNSMLLTGPDLLTPLMTVLCQFRQKQFAITGDIK
FT                 QMFHQLRIRKEDRQSQRFLWRAKPDTAPDIYIMDVATFGATCSPCSAQYAK
FT                 NLNAAEHEAEYPDAARAITQNTYVDDYLDSRDTIEEAVQLAEDVREVHSKA
FT                 GFEIRNWHSNAPEILERIGVENGQNTLQAVKSFSAEKTTNAERVLGMMWEP
FT                 NEDLFVFAVQFHTDLTSLLTGEIVPTKRQVLRVVMTLFDPLGLVASFTIHG
FT                 KILIQNIWRSGVGWDDPIINRDFLDWKRWIKLLPELKRVKVPRCYFPDYER
FT                 ESYGSLQLHIFVDASELAYCSVAYFRIVDRGTPRCSLVAAKAKVTPLRPQS
FT                 IPRNELNAGVIGVRLMKSVVQNHSLQITERYFHTDSTVLLAWLRADARKYR
FT                 PYVQFRITEILSESSVEEWRWVPTRLNIADEATKWGSGPSFDRQSKWYRGP
FT                 EFLWQPEKEWPAKKSVMEEPTEDLRATNVHLEVASDTILQFNKFSRWEKLI
FT                 KSLAYVYHFINRCAFKQRVPTKSRTATLTHDDFVSAEKGLWRMIQSQEFGE
FT                 EITSMKSAKPTMMKARLAKCSPLAKLSTFLDDDGILRMESRIDPKAAYYSY
FT                 SFRNPIIVPKCHYVTDLLILRFHERYGHANTETVLNELRQLYCIPKMRSVV
FT                 KKAIKQCMWCRVYRIKPDTPRMAPLPQPRVMPFVRPFTHTGIDYFGPLIVK
FT                 QGRSNVKRWVAIFTCLTIRAVHLEVVHSLTLQSCKMAIRRFVDKRGAPQNI
FT                 FSDNGTYFRGAARELASEIKAINRDLAGTFTNADTEWHFNPPSAPHMGGVW
FT                 ERKVRSVKDAFKVLAHREKLDDEGLLTLLSEASMIVNSRPLTFVPLESSEQ
FT                 EVLTPNNFLLMSSGGNNSLTRIPVDHPVSLRTNWGVMLHLLNQFWKTWIKS
FT                 YLPTIARRTKWFEDVRPLMEGDLVVIVDETVRNGWLRGRVTKTYPGIDGQV
FT                 RKVDVQTESGVLQRPAIKVALLDVLPGGKPN"
XX
SQ   Sequence 6368 BP; 1819 A; 1556 C; 1540 G; 1452 T; 1 other;
     aactcgaaat ttacgagtca tgatgagcgc atcgaatcct aacctcacta tgcaggaagg        60
     cgtaaatagt tgcaaaagtt gcaatcgtcc agacagtgtg gaggatatgg tggcctgcga       120
     caaatgcaac agctggtggc acttcagctg tgccggcgtg caagcttcca tatgcgatcg       180
     ctcgtggcgt tgcccaaact gctcgacatt ttgtggtacc atcgtgtccg atcactcaaa       240
     tgcttccagc gcaagattac gtttgaagca gctcgaggag gctaaagctc ttgaggataa       300
     aatacggcag gaacaagcgg aaagggaacg tgaattttta gcggcaaagc atcagctaga       360
     atcggagatc gaagcaaggc aatcggtagg cggaagcctt agaagtcacg aaagtcatcg       420
     aacccgacgc agcagagtgg ggacttgggt ggcagagcag gattttacaa taggtaatag       480
     agcgattgag aatcatccat cggaggccgg caaaacctct accccgatat tgacgggtca       540
     ggtaggaacc ggagctacga cgaaaattct tcccttacct caactgaaag cccatgttca       600
     gcaacaagaa acacccaccg agcaccaaca ttcaggtgcg acccgcgcag atgaacaagc       660
     aaatctacct cctcccaata caccgctggg cctaccgaag cagctactcc cgccaaccaa       720
     atccgtggga ccactcgagt taccgtgcct cccggcaaaa ccgtcacact acccggaaca       780
     caagattccg atgtcgggac cagggaccgc aacaaatccg atgaataccg cggaggcagc       840
     ctactgcccg aacaacgcag tattgctaca gcatccttca cttaaagcaa cgaacacggt       900
     agcgtcatct tatcctgagt tgcctgcacc acctccggtg cactcgttag gcacgttggt       960
     gcagcaactt ccttcggcaa gccttcccgt takgacagca tctagactac cacaaatgag      1020
     ctccatgtat actacgaagc cattcgctcc tccgttgtca atgtttcctc caagcaaccc      1080
     tatgcaatgg cggaatcaac cagcacctcc ggggaactca tcacgtttaa cgtttgtcgc      1140
     ttcgaagcac cctgaaacaa cggagcatat aatgggtccc acgaggcaaa ccgaccatat      1200
     agaacaagat cattcctggc taaacccttc ggatcctttg aaccgagatg ctgatttcgg      1260
     acacaggccc acactaggaa acaggttgcc gccgcaagcg tcatcacaac acaacgcaca      1320
     gggcgatcca acgtaccact cgtggtacca acaaccgatg cccccctact ggcagccaca      1380
     gcactcgatg cagagttcac tcggaggatt gataaatcca caacaattag ctgcccgtca      1440
     tgtggtctca cgggaattac ctaaattttc cggggatccc ttagaatggc ccatgttttt      1500
     gagcgcattt gaatccacca cggtgatgtg tggaatccaa ccggatgaaa acctcgctag      1560
     attgcagaaa tgtttggtcg ggaaggcaag ggaaaaagta cacagtattt taaccctacc      1620
     ggaggcaatt cctgagataa tcaaaacact gcgggaggaa tgcggccgac cagaccagct      1680
     ggttcattgt ttaatgagta aaatcagaaa tgctcctgct cccaacgtaa ataaattaga      1740
     cacgttagtc actttcgggc gtgaggtgcg aaatctcgtc acctacatag aagccgccaa      1800
     cttgcaagcg cacctctcca accccatgct tctgtcggaa ctgatcagca aactccctcc      1860
     aagcattcga ttggattggg gcttacacac ccagcgagtt cctgacgtta cgttgaaggc      1920
     gttcagcgat tttgtatcat ccataaaggc agctgcttgc caggtttcct ttccattcga      1980
     atccaactct caagatgaca tgagtcgctc tgggagaaaa aaggagaaaa gcgggtacgt      2040
     aaatccgcat tccgctgaag tgaacatcag agatggtgcc tcgtccacga aaccgcagaa      2100
     gcagcaaaag ccatgcctaa tgtgtcaacg tggcgaccat aagattagga actgtaataa      2160
     atttagttca ctgacgatta ctgaacggtg gaatttagtg gaccagcaaa acatgtgcca      2220
     gcgatgcctg acctgtcacg gtaaatggcc gtgtagaact tcgcagccct gtggtatgga      2280
     cggctgtgga gatatgcatc ataagctgtt acatcctggt aagccccaag cggacgttcc      2340
     caggtctaaa ggacatagct catcgggatt cgtaaccact catcacggca agcaacatgg      2400
     tactcttttt aagattctac ccgtgacgtt gtcgcataat gggaaatcgg ttacgacatt      2460
     cgcctttcta gacgacggtt ccaacgtcac gcttcttgaa aatagtattg cgaacatgct      2520
     cgacttagat ggggaagaaa cttcgctgtg tctacaatgg acaagtgacg taacaagaaa      2580
     agaatccgta tcgaaacgag tacaagtctg cataaccgaa ggtgacggaa aaagccaaca      2640
     tgtgttgtca caagtgcaaa ctgttgaaaa ccttagtctg cctcgacaga gcttggacta      2700
     cgctgaaatt agtggcacat tcccgcatct acgtggactc ccaatccaga gttataccga      2760
     agcagttcca aagattttga ttggtgctga taatgctcgg ttgaagctac ccttgaacaa      2820
     gcgagagaga cgagatgaag agccagtagc cgttaaaacg aaattgggtt ggacgatatt      2880
     cggtggacga cgagtaaacc ataccgacaa atgtgcgatg gtgcacgttt gtgactgttc      2940
     tgtggatcaa cggcttcacg atctagtgaa agattatttt gaaatggacc agctgggcgt      3000
     gacggatact tcaatactag agtccgacga aaacaaacga gcgagaagga tactggaaaa      3060
     tactacccgg cgtacggaat caggtcggtt tgaaaccgga ttactgtgga agagtgatga      3120
     agtgcaattt cccgaaagct acgcaatggc tgaacgaagg ctcaaatgtc ttgagcgacg      3180
     acttcaagca gatccggagc tccgaagaaa cattgaggca caaattgttg agtatcagga      3240
     gcaaggttat gctcataagg caactgagac agatttgcga gaagccgatc caagtcgggt      3300
     gtggtattta ccgctcggaa tcgtgcgcaa tccgcgtaaa cccaataaga tgcgtcttgt      3360
     atgggatgcc gctgcgcgtg tgaagggagt ttcgttaaat tccatgctcc tcaccgggcc      3420
     cgatttactt acgccgctta tgaccgttct ttgccaattt cgccaaaagc agttcgccat      3480
     aacaggcgat attaagcaga tgttccatca gctgcgaata aggaaggagg acagacaatc      3540
     gcagaggttt ctgtggcgcg ctaaacctga caccgctccg gatatttata taatggacgt      3600
     ggcaacattc ggcgccacat gttccccatg ctccgctcaa tacgcaaaaa atttaaatgc      3660
     ggcggaacac gaagcagaat atccggatgc agctagagct atcacccaga acacctatgt      3720
     agatgactac ttagatagcc gcgacaccat cgaagaagcc gtacaattag cggaagatgt      3780
     tcgagaagta cacagtaaag ccggatttga aatccgaaat tggcattcca atgctccaga      3840
     aattctcgaa cggattgggg tggaaaacgg ccaaaacacg ttgcaagcag tgaagagttt      3900
     ctccgcagaa aagacgacga atgccgagcg tgtcttagga atgatgtggg aaccaaatga      3960
     ggatctgttt gtatttgcgg ttcagtttca tacggatcta acgtcgttac ttaccggtga      4020
     aatagtgccc acgaaacgtc aagttttgcg tgtggtcatg actctttttg acccgcttgg      4080
     ccttgttgct tcttttacaa tccacgggaa aattcttatt cagaatattt ggagatctgg      4140
     cgtcggatgg gatgatccca ttatcaaccg ggactttttg gattggaaac gctggataaa      4200
     gttactgccc gaattaaaac gcgtgaaagt ccctcgatgt tatttccccg actatgaacg      4260
     agaaagttat ggatctttgc agctacatat ttttgtagac gcaagcgaac ttgcttattg      4320
     cagtgtagct tattttcgca tcgtggacag gggaacacct cgttgttctc tggtagctgc      4380
     gaaagccaaa gtaactccat taagaccaca gtccattccc cgcaacgagc tgaatgcagg      4440
     agtaattggc gtcaggctca tgaaaagcgt cgtgcagaat cactcattgc aaataaccga      4500
     gcgatacttc cacactgatt cgacagttct tttggcatgg ctacgggctg acgcacgaaa      4560
     gtatcgtcca tatgtccagt tcagaattac ggaaatcctg tcagaatcat cagtggagga      4620
     atggcgctgg gtccccactc gactgaacat cgcagacgag gcaaccaagt ggggtagcgg      4680
     ccccagcttc gatagacaga gtaaatggta ccggggaccg gaatttctat ggcaaccgga      4740
     aaaggaatgg cctgcgaaaa aatctgtaat ggaggaacca acagaagatt tgagagcaac      4800
     aaacgtacac ctggaagtag catcggacac aatcctgcag ttcaacaaat tctctcgatg      4860
     ggagaaacta atcaagtctc tcgcctacgt ttaccatttt atcaatcgct gcgcgttcaa      4920
     acaacgtgtt ccaacaaaat ctcgcacagc aacgctaaca catgatgact tcgtatcggc      4980
     agaaaaaggc ttgtggcgta tgatccaatc ccaagagttt ggagaggaaa ttacgtccat      5040
     gaaatctgcc aaaccaacaa tgatgaaggc acgcctagca aaatgcagcc cgctggctaa      5100
     actatcgacg tttttagatg acgatggaat tctacgaatg gaaagcagga tcgatccgaa      5160
     agctgcttac tattcctaca gttttcgaaa tccgataatc gttcccaagt gtcactacgt      5220
     gaccgatctc ttaatacttc gtttccacga acggtatgga catgccaata ccgagactgt      5280
     attaaatgag cttcgacagc tctattgtat tccgaagatg cgttccgtag tgaagaaggc      5340
     cataaaacaa tgtatgtggt gccgcgtgta cagaatcaaa cctgatacac ctagaatggc      5400
     tcctttacca cagccacgtg tcatgccttt tgtgcgtcca tttacacaca cgggcattga      5460
     ctatttcgga ccactcattg taaaacaagg acgaagtaat gtaaaaaggt gggtggcaat      5520
     cttcacctgc cttaccatac gcgcagtgca cctagaggtg gtgcactctt taacgcttca      5580
     gtcgtgcaag atggcaatcc gtcgatttgt cgacaagcgg ggagccccgc aaaatatctt      5640
     ttccgacaat ggcacttatt tccgtggagc cgccagagaa ctagcctctg aaataaaagc      5700
     aataaatcgc gatctagctg gcaccttcac caatgctgac accgagtggc atttcaatcc      5760
     gccatctgct ccccacatgg gcggtgtgtg ggaacggaaa gtccgctctg tcaaggatgc      5820
     tttcaaagtt ctggctcatc gcgagaaact tgatgatgaa gggcttctta cactactgtc      5880
     ggaggcctca atgatcgtca attctaggcc gctcacattt gtaccattag aatcttctga      5940
     gcaggaggtt ctcacaccga ataatttcct cttgatgagc tccggtggaa acaatagtct      6000
     aactcgaatc cctgtcgacc atccggtttc gttgcgtacc aattggggag tcatgctaca      6060
     cttgttgaac cagttctgga aaacatggat caaatcgtac cttccaacga tcgccaggag      6120
     aactaagtgg ttcgaagatg tccgcccact catggaaggg gatctagtag ttatagtcga      6180
     tgaaactgta aggaatggtt ggcttcgtgg acgtgttacc aaaacatatc cgggtatcga      6240
     cgggcaagtg cgtaaagtgg acgtccaaac tgaatctgga gtactacaac gacctgcaat      6300
     caaagtagct cttctggatg tgctgcctgg tggtaagccc aactaacgga aggccttacg      6360
     ggccgggg                                                               6368
//
ID   BEL-664_AA-LTR repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-664_AA-I;
KW   BEL-664_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-626
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-626
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 59-59 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 626 BP; 219 A; 112 C; 103 G; 192 T; 0 other;
     tgttgacgcg attaacgaag acgccctttt ttttggattc gcagtcgttc aaaatactac        60
     tactactact acgatcgcta cccacgtcac cgcaacgatc gcagaaagaa caatagagaa       120
     ttatcattag ttagctatag cgtggacgat ttgtacgcac aatttcttaa actactctct       180
     taaataaccg tgaattggac taaattgaat tcttagttta tattatcgat tatcgaaatc       240
     aatagtgtga attcgagcag gtataataaa aaaatatata cttaacgcta ctccttatca       300
     tatcgctgat gcatcaattg cttcgtatag gttcaggcat tcctcgaaat aaaatcagct       360
     tttgtagtct ctctagtgaa tggtcctaaa tatttgactg taagtatcaa tataactaaa       420
     attgttaaca agaactgtga atttatggag caaatattgt atcaggtcga aaatatcaat       480
     cgcatcatac cagtttgagg ttcaatacgc tcaaccatag gaaaactaaa ttgtaagtaa       540
     tgatgttacg aattataaat aacaactaag atgaaatata atttcagtcg agccgcgttc       600
     cagtcggact acgaaaaagt ttaaca                                            626
//
ID   BEL-665_AA-I repbase;    DNA;    INV; 6236 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-665_;
KW   BEL-665_AA-I; BEL-665_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6236
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6236
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6234
FT                 /product="BEL-665_AA-I_1p"
FT                 /translation="MPRSTRSAPGGTPHCMACTGPETMRMVSCCQCGTWWH
FT                 FECVNVNESIAAPDRPFFCPHCQKPSPTIPPQLNPTSEVSGRKTVSLSGVS
FT                 STSSVRAKRARLQLEKLEAEKALMEKRLEHARREQIIRHEQEKLMQEAEIE
FT                 QARLRMEQTIIEETFRVREEELMDEESDGRSVSSEQTSISKVQQWQTKQPY
FT                 IARTSTMTETAPNANGMVHTQVALTIGEQGNIVGEAIEGRLGPVNQPNVEP
FT                 LLGGIIDRTASMLGTSVQRDSIACVDISSPNIAMSRLPDKRNAENNVLQIP
FT                 VSMSFKPQGRSSLAESKLPASSSVLVPHPIGRNEASKSSGNVNFCDRVNHI
FT                 HGGIDVHQQRPNSPNLPAPGCRAPLPRPRRIESSCPPHQMSPDDPMRFQPP
FT                 PPTQVVPGCAIGDEQRRPNHPFFVDNQQVQHWGPTAQQLAARHVMSKELPS
FT                 FSGNPEDWPLFISSFNNTTQACGYSEAENLARLQRCLKGHALESVRSRLLL
FT                 PQAVPKVIETLETLYGRPELLIHSLLQKVRGVPAPKPERLDTLIGFGMAVR
FT                 NLCDHLEAGGQEAHLNNPMLLFEMVEKLPANMKLDWSLYKQRCGEVNLREF
FT                 AQYMSTLVRAATDVTLHYGPRPTPQPRDSRPEKGGKDKNFCGAHLVEDSKT
FT                 SKKTDESVNISTPSCLICKDPKHRVKECNGFTRKSVDERWKIIQNLGLCRN
FT                 CLGAHGRRPCKVNKRCEVEGCQLKHNPLLHSKRDKQENTEQLQGSNAVTNH
FT                 HYAGKSTLFRIIPVTLFGNNRAVSVYAFLDDGSERTLIEEKIAEELGIEGE
FT                 HLPLCLQWTANVKRKENNSQRIALQISGANGSKHTLSDVRTVSRLDLPRQS
FT                 LPYSKLAKLFPHLQGLPVHDYDQAVPCILIGNDNAHITATLKLREGQPGDP
FT                 IAAKTRLGWTIYGKNTENLGNLAHTFHICECRNENSLHELVEQFFSIESLG
FT                 ISTMMVPEPEEVQRANRILRETTKRVGTRFETGLLWKFDHWEFPDSYPMAV
FT                 KRLQGLERRIQSDPVIGESIKRQIAEYVVKGYIHKATEQELNEADPRRVWY
FT                 LPLGVALNPKKPSKVRIFCDAAAKVDGISLNSLLLKGPDLLNNLFEVLFGF
FT                 REKRIAVCADLKEMFHQIQIRKEDRHAQRLLWRDDPTKSPEVYLMDVATFG
FT                 ATCSPCSAQFVKNLNAAEHAKEYPAAAVAIERKHYVDDYLDSADSVEEAVK
FT                 IAEEVRHVHSQGGFHLRNWLSNSKEVLLRVGVGENDPASEKNIQLDKGSST
FT                 ERVLGLFWRPDKDDFTFSTNSARHVEKPTKRQALSVVMSTFDPLGFLAFFL
FT                 IHGKIFIQELWRAKIQWDQLLPEKLSEQWTRWIAYFQCLNQISIPRCYFPR
FT                 HSVKDILSLQLQIFVDASEEAFACVAYLRAEFSDGVEIALVAGKSKVAPLK
FT                 ALSIPRLELMAAVVGARLRQTIIEGHSLHIDRTCMWSDSKTVLAWINSDHR
FT                 NYRQFVACRVGEILSKTRANQWRWISSKQNVADDATKWGRGLSLSPSSRWF
FT                 KGPDFLYLPEEYWPADIPSESSYTNEELRACLIHREAIVEHQVQWNRFSQW
FT                 KRLLRTLAYVHRYVQNLKRKATNNLILLGPLTQAELAKAETTIWHWVQGEV
FT                 FPDEVAILAGVRRDHSGNPRKLDRTSSIRKLSPFMDQEGVLRMDSRIAAAT
FT                 FASYDTRFPIILPKDHAVTQLIIGWYHQKYLHGNGETVVNEVRQRFHVPNL
FT                 RTVIRREKKKCKWCKLKLAVPAVPRMAPLPTARLKAFERPFSYVGVDYFGP
FT                 IAVRVNRSCVKRWVALFTCLTVRAVHLEIVHSLTTESCKMAFRRFIARRGS
FT                 PVEIYSDRGTNFIGSNNELQREKSAMDQELAETFTNAHTKWIFNPPASPHM
FT                 GGAWERLVRSVKTALAAMYTTRFPSEETLATLMVEAEGVVNSRPLTFIPLE
FT                 EEQQEALTPNHFLLLSSNGVVQTPRKLADSSEACRNQWNLYRVMVDKFWRR
FT                 WVREYLPDLTRRTKWFEEVPPIRTGDLVIIVEDNVRNGWIRGRVTEVVQGG
FT                 DGRIRQAMVQTATGLMRRPIAKLAKLDVKGSKAEPGELDQLTGRG"
XX
SQ   Sequence 6236 BP; 1763 A; 1425 C; 1637 G; 1411 T; 0 other;
     aactaaaaga aattagccat tatgccaagg agtactcgca gtgcgcccgg aggcacacca        60
     cactgtatgg cttgtaccgg gccagaaacg atgagaatgg tttcatgctg tcaatgtgga       120
     acatggtggc actttgagtg cgtaaacgtg aacgaaagca tcgctgcacc agatcgccca       180
     ttcttctgcc cccattgcca gaagccttca ccgacgattc caccccagct gaatccaaca       240
     tccgaagtta gcggcagaaa aacggtcagt ttatccggag tttcatccac ctccagcgta       300
     agagctaaga gggctcgcct acaactggaa aaactcgagg cagaaaaagc tctaatggag       360
     aaacgtttag agcatgcacg tcgagagcag atcattaggc atgagcagga gaaactaatg       420
     caggaagctg agatcgagca agcccgctta aggatggagc aaaccatcat tgaggaaact       480
     ttccgagtta gggaggagga attgatggat gaggagagcg acgggaggag tgtttcatcc       540
     gagcagacga gtatcagcaa agtgcagcag tggcagacaa agcaacccta cattgcccgc       600
     acctcaacga tgacggaaac tgcacccaac gccaacggga tggtccatac acaagtagca       660
     ctcacaattg gtgaacaagg taacattgta ggcgaggcga tagaaggtag gctagggcca       720
     gtaaatcaac ctaacgttga gccattgcta ggaggcataa ttgataggac agctagtatg       780
     ttgggaacca gtgtacagag ggattccatt gcttgcgttg acatttcgag tcctaatatt       840
     gccatgtcac gtctgcctga taagcgaaac gcggaaaata atgttcttca aattccggtt       900
     agtatgtcgt ttaaaccaca aggtcgttct tcgctggcag aatcaaagtt acccgcgagc       960
     tcgtcggttc tcgttccgca tcctatcggt cgaaatgaag cgagcaagtc tagtggaaat      1020
     gtgaatttct gtgatcgagt gaaccatatt cacggtggta ttgatgtgca tcaacagcgt      1080
     ccgaattcgc caaatctacc ggcacctggt tgcagagctc cgttaccgcg tccccggcga      1140
     atagagtcat cgtgcccgcc tcaccaaatg agtcccgatg atccgatgcg ctttcagcca      1200
     ccacctccaa cacaagtggt cccaggatgt gcgattggag acgaacaacg aaggccgaac      1260
     catccgtttt tcgtcgataa tcaacaagtc caacattggg gtccaacagc acagcaactg      1320
     gcagccagac atgtgatgtc gaaggagttg ccgtccttct caggcaaccc ggaggattgg      1380
     ccgcttttta tcagttcatt caacaataca actcaagctt gtggatattc ggaggcggag      1440
     aatcttgcca gattacagcg gtgcttaaag ggacatgctt tagagtcagt acgaagtcgt      1500
     cttttgctac cacaagcagt acctaaagtc atcgaaacac tggaaacgtt gtacggcaga      1560
     ccggagctgt tgatccattc attactacaa aaggttcgag gagttcctgc gccgaagccg      1620
     gagagattgg atacgctgat tggattcgga atggcagtgc ggaacctctg tgaccattta      1680
     gaggctggag gtcaagaagc ccatctgaat aacccaatgc ttctcttcga gatggtagag      1740
     aagcttccag caaacatgaa gctggattgg tcgctataca aacagcgatg tggagaggtt      1800
     aatcttcgtg agtttgctca atatatgtca accctggtac gtgcagctac ggacgtgact      1860
     ttgcattacg gtccacgccc gacgccgcaa ccacgagact caagaccaga gaaaggtggc      1920
     aaggataaaa atttctgtgg agctcatttg gtggaagatt cgaagacgtc aaaaaagacg      1980
     gacgagagcg tgaatatatc taccccatcg tgcctcatct gcaaagaccc aaagcatcgt      2040
     gtaaaagagt gtaatgggtt caccagaaag agtgtggatg aacgctggaa gattatccaa      2100
     aatttaggat tgtgtcggaa ctgtctaggc gcgcatggaa gacgaccttg caaggtcaac      2160
     aagcggtgcg aagtagaggg gtgccagtta aaacataatc cactactgca ttccaagcgg      2220
     gataaacaag aaaatacgga acagctacaa ggctccaatg ctgtcaccaa ccatcattac      2280
     gcagggaaat caacgctttt ccgcatcatt ccagtgacgc tgtttgggaa caaccgtgca      2340
     gtttcagtgt atgcgttttt agacgatgga tctgagcgaa ctctgatcga ggaaaagatt      2400
     gccgaagagc tgggaattga aggtgaacat cttcctttgt gtttgcaatg gaccgcgaac      2460
     gtgaagagga aggaaaacaa ctcgcagcga atcgctctgc aaatctccgg tgctaacgga      2520
     tcgaagcata cgctgtcgga tgtccggaca gtcagtagat tggacctacc acggcaatct      2580
     ttgccctact caaagctggc gaagctattc ccgcatctgc agggactccc agttcatgat      2640
     tacgatcaag cagtgccttg catcttgatt gggaacgata atgctcacat tacagcaact      2700
     ctaaagctac gggaaggaca gcctggagat cctatagcag cgaagacacg gttagggtgg      2760
     accatctatg gaaagaatac ggaaaaccta ggaaatctag cgcacacctt tcacatctgt      2820
     gaatgccgga acgaaaactc actccatgag ttggtagaac agtttttcag catagaaagt      2880
     ctgggaatat ctaccatgat ggttcctgag ccagaagaag tgcagcgggc gaatagaatc      2940
     cttcgggaga ctactaagcg agttggaacg cgattcgaaa ccggacttct ttggaaattt      3000
     gatcattggg aatttccgga cagttacccg atggccgtta agcgattgca gggtttggag      3060
     cgccgaatcc agagtgatcc tgtaataggt gaaagcatca aaaggcagat agcggaatac      3120
     gtagtgaagg gatatatcca taaagcaacg gaacaggagc tcaacgaggc agatccacgg      3180
     cgcgtttggt atttaccttt gggcgtcgca ctgaatccga aaaagccttc caaggtacgc      3240
     atattttgcg atgctgcagc caaggtagat gggatttcat tgaacagttt gcttctgaaa      3300
     gggccggacc tactcaacaa tctgtttgaa gttctctttg gttttcgcga aaaacggatt      3360
     gcagtttgcg ctgacctgaa ggaaatgttc catcagatcc agatacgaaa ggaggaccga      3420
     catgctcaac gactactctg gcgcgatgat ccaacgaaaa gcccggaagt ctacctaatg      3480
     gacgttgcta cgttcggggc cacctgctca ccgtgctcag cgcaatttgt caaaaactta      3540
     aacgccgccg agcatgcgaa agagtatcca gctgctgctg tcgctattga acggaagcac      3600
     tatgtggatg actatctgga cagcgcggat agtgtggaag aagcggtgaa gattgcagag      3660
     gaagtgcggc acgtgcattc acaaggtggt tttcacttgc gtaactggtt gtccaactcc      3720
     aaagaagttc tcttacgggt cggggtcggg gagaacgatc cagcctctga gaaaaacatc      3780
     caattggaca aaggaagctc aacggaacgc gttcttggac tgttttggag acccgataaa      3840
     gacgatttca ctttctccac aaattcggcc agacacgtgg agaaaccgac caagcgccaa      3900
     gccttgagcg tggtgatgag cacctttgac ccattaggct tcctggcatt ctttctgatc      3960
     catggcaaaa ttttcattca agagctctgg cgggcaaaaa tccagtggga ccagttgctt      4020
     ccggagaaac tgtcagagca atggactcga tggatagcgt atttccaatg cctgaaccaa      4080
     ataagtattc cgcgctgtta ctttccacgt cattcggtca aggacattct gtcgctacag      4140
     ctgcaaatat ttgtagatgc aagcgaagag gcgtttgcgt gcgtagcata cctacgggcc      4200
     gaattttcgg acggagttga aatagcactt gttgctggaa aatccaaggt agcgccttta      4260
     aaagcgttgt ccataccaag gctagagtta atggcagcgg tggtaggagc acgtttgcga      4320
     cagaccatca tcgaaggaca ctcgttacat attgatcgga cttgcatgtg gagtgattcc      4380
     aagacggtgc tcgcctggat caactcagat catcgtaatt accgccaatt cgttgcttgt      4440
     cgtgtaggag agattctctc aaaaacacga gctaatcagt ggcgctggat atcatccaaa      4500
     caaaatgtgg cagacgatgc cacaaaatgg ggaagaggac tctctttgtc accgagtagc      4560
     cgatggttta aaggtccaga ttttctgtac ttaccggaag aatattggcc cgcagacatt      4620
     ccatctgaat cctcgtatac gaatgaagaa cttcgagctt gtctgataca ccgtgaagcg      4680
     atagttgagc atcaagtaca atggaaccga ttctcgcaat ggaagcgttt gttgcgaaca      4740
     ttggcatatg tccatcgtta tgtacagaac ttgaaacgga aggcgaccaa taacttaatc      4800
     ctgctcggtc cgttaactca agccgagcta gctaaagcgg agacaactat ctggcactgg      4860
     gtacaaggtg aagtgtttcc tgatgaggtc gctatacttg ccggagtacg cagagaccac      4920
     tctgggaatc cgcggaaact ggatcgaacc agtagtatcc gtaagctgtc gccgttcatg      4980
     gaccaagaag gtgtactgcg catggatagt cgaatagctg cggctacctt cgcctcatat      5040
     gacacccgat tccccatcat tttgccaaaa gatcatgccg taacgcagct gattatcggg      5100
     tggtatcacc aaaagtatct tcatgggaac ggagagaccg tcgtgaatga agtgaggcag      5160
     cgttttcacg tgcctaatct acgaacggta attcgtagag agaaaaagaa gtgtaagtgg      5220
     tgtaagttaa aactagcagt tccagcagtt ccacggatgg caccactccc tacagccaga      5280
     ttgaaagcat tcgagcgacc cttctcatat gtcggagtgg attacttcgg tccgatagcc      5340
     gttcgtgtga atcgcagctg tgttaaaaga tgggtagcgt tgtttacgtg tttaaccgtc      5400
     cgtgcagtcc acctagagat cgtacactca cttacgacgg agtcctgcaa gatggccttc      5460
     cggagattta ttgctcgcag aggatctccg gtggaaatct atagtgatag gggaaccaac      5520
     tttatcggat ccaataacga attacagagg gaaaaaagtg caatggacca agagcttgct      5580
     gagaccttca ccaacgcaca caccaagtgg atatttaatc cacccgcctc ccctcacatg      5640
     ggaggcgctt gggagcgttt agtgagatcg gtgaagaccg ctctagctgc gatgtatact      5700
     acaaggtttc ccagcgagga aacgctagca acactaatgg ttgaagcaga aggtgtagtc      5760
     aactctaggc cccttacatt tattccgcta gaagaagaac aacaggaagc gttaacaccg      5820
     aaccacttcc tcttgttaag ttccaacggt gtagttcaaa ctcctaggaa attggcagac      5880
     tcttccgaag cctgtaggaa tcagtggaac ctgtaccgtg ttatggtgga caaattctgg      5940
     cgaagatggg tacgagaata tttgccggac ttaactcgtc gtaccaagtg gttcgaagag      6000
     gtaccaccca tacgaacagg tgatttagta atcatcgtgg aggacaacgt gcgcaacggg      6060
     tggatccgag gacgggtgac ggaagtagtc cagggaggtg atggacgtat acgacaagct      6120
     atggtgcaga cggccactgg gttgatgcga cgtccgattg caaagctggc taagttggac      6180
     gtaaagggaa gtaaggctga gccaggtgaa ctggatcagc ttacgggtcg gggagt          6236
//
ID   BEL-665_AA-LTR repbase;    DNA;    INV; 638 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-665_AA-I;
KW   BEL-665_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-638
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-638
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 68-68 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 638 BP; 212 A; 113 C; 132 G; 181 T; 0 other;
     tgttacggtg aatacggccg tcgctctgag tacccctcgg gaaagcgata acgcatcgct        60
     tcagcatatg tcagctggca tgacatctct gggtgacact tcgaagtgta agtaaagatc       120
     taatcgatcg agtgaggaga atacaaaata ctagccagat acagattaag agtcattaga       180
     gaagaattga ggattaagcc taaaagatta taaattaccc gaattagtga aattttcgca       240
     aaaatcttta ttgtaagtaa acgatgaatt acataaacat aactccgaag atgaactgaa       300
     gaaacgaatt gtttaaatag gtcgcattct tgccggtact gccaagggct acatgattca       360
     gcatattgga atttgaggat ttgtttagaa gtaagtgata cttgtataca taaggataag       420
     agaggttaac cttggaatta ttctagtaaa acgatcttga gctgtaattt caaaactgtt       480
     ggtggatcta aacaggagcg cggacctaat ttgtaagtct agcaactttc aatggtttac       540
     ataattttct aataaatttt gcatagcttt tagcgcattg aaccacccct atcaccggtg       600
     tttcagctta gaagactccg aatcctccta cgccaaca                               638
//
ID   BEL-666_AA-I repbase;    DNA;    INV; 6275 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-666_;
KW   BEL-666_AA-I; BEL-666_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6275
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6275
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..6254
FT                 /product="BEL-666_AA-I_1p"
FT                 /translation="MEGHHNQPEFKCKLCCNLDISKSHMIVCDQCRLWEHY
FT                 HCAGVSEALHSRPFICKQCADENAAGSTIATRLRSQTKRAMSSKASEGKPA
FT                 SNIGSQVLSNRSSSSRASIVKVQLELIAVDEKMRQQELEEEDTIRQLEQQE
FT                 AQRQLDERKRQLEEQKRLMEEESILRQRRLEADKARLLKQQSIRRESLERR
FT                 NEIMLQISERGSVIDSIASSREKVSDWLTTHLHDGKTVEKTLGNEIDPRNN
FT                 MVPAAPNGASSLTLEVPMNRENATVSRAIQPQPLVDGNLRRSPSAGPATMC
FT                 GGGTVRKSSSSLSFNRLQGVRSAAVRVPFHRFVASSKPLHINPAAYSCPPA
FT                 IHQVFAPHEGETVSARKSHHTHGPSWSTPVQSSAVPYFQPVQFVPRNSFRE
FT                 IPHSTGFADRRPTQNHPTTSQTFASSTQSEQPGVLSSQQIAARQVVGKDLP
FT                 HFGGSPTDWPMFISSFEQSTVSCGYSNAENLVRLQRSLTGHAREAVRSRLL
FT                 LPTNVPQVIQTLRTLYGRPELLIRSLHEKIRRTPGPRYDRPESILEFGLAV
FT                 QNFVDHLQAADQEDHLANPMLMQELVEKLPGPMKMDWARFKGQQLRADVST
FT                 FGEFMAKLINAASEVSFELPGLTTLRDTEKHQRPKEKARIQTHSTDKASAP
FT                 TSTENGRKPPKECRICERGNHRVAECSKFKHLNLEERWKQVQDKGLCRTCL
FT                 NNHGKWPCKSWKGCEIDGCRLKHHTLLHSSSAPVTSTHSVNVSANEFSSDE
FT                 SQTLFRILPVVLHANGKSVMVFAFIDEGSQISMLEEKIAKDLGVSGPKIPL
FT                 TLQWTGNVKRNELQSEEVSLEIAGKLNETRYELRHARTVSRLLLPKQKLNY
FT                 TDMSSRFPHLKGLPIADYDEVQPKLLIGLDNLRLGVPLKLREGGSSDPIAA
FT                 KCRLGWSVYGRASTKSVPRAIVNFHTAAAPSSDDLLNEQLRDFFILENNGA
FT                 CALNEKLESDEDKRARKLLEETTRRTRSGFETGLLWKVDDPKFPDTYPMAI
FT                 RRMKALERKLRSNPTLMQRVSEQLCDFERKGYVRKVSEPDFAAIDREKTWF
FT                 LPLGVVINPKKPGKIRLIWDAAAKVNGVSFNSYLLKGPDLLTPLPKVLSGF
FT                 RLFPVAVSGDIREMFLQIKLQSNDRNAQMFVFRHHPDDHIQVYAINVTMFG
FT                 STCSPSSAQFVKNANAEQYALHYPRAAAAVKEHHYVDDYLDSFRTVDEAIQ
FT                 VVNDVKYVHSQGGFQICNFLSNEEEVLQRTGEIEPVSSKELALVRGETTES
FT                 VLGMKWIPSEDVFTYTFAMRDDLRTILEDQHVPTKREVLKVIMSLFDPLGL
FT                 VSFFLVHGKVLMQDVWASGIGWDEEINEQILNRWRQWIFHFPQLDTLRIPR
FT                 CYFGSPFPKNLDQLEVHILVDASDSAYASVAYYRLETENGIHVALICGKTK
FT                 VAPLKVLSIPRLELKAAVLGVRMLESIKGYHSYAIKRRIIWSDSSTVLAWI
FT                 RSEHRRYNKFVAVRVGEILTTTDVQEWRWVPSRMNSADLATKWKNGPDFSA
FT                 ENAWLCGPSFLHHPESFWPQQNKTVTTCEELRPNHAHSMIQPLVDASRFSQ
FT                 WERLQRTMAFVFRFINNSRLKRRGSALRLGVLQQDELQLAERALWKVAQAE
FT                 AFPEEILTLSETKGPPDARHRRVAKSSPIYKNWPFLDEDGVLRLRGRIGAA
FT                 TFAPIEAKYPTILPRQHLITFLITDWYHRRFRHANRETVTNEMRQRFEIAK
FT                 LRALIEKVTRNCAMCRVKKAAPNPPAMGPLPSARLQPFVRPFTYVGVDYFG
FT                 PILVKVGRSQVKRWVALFTCLTVRAVHLEVVHTLSTESCIMAVRRFVARRG
FT                 YPSEFYSDNGTCFQGASKELQREEVERRTNALAHTFTTATTRWCFIPPSAP
FT                 HMGGAWERLVRSVKVAVASVADLPRKPSDEVLETVLLESEALINTRPLTYI
FT                 PLESADEEALTPNHFLLGSSSGDKLAATEIVETPAILRSSWKLAQVITKRF
FT                 WARWVKEYLPVITRRSKWFDEVRDIGVGDLVLVVDGAAKGQWTRGRVEAVI
FT                 PGRDGRVRQALVRTASGVDRRPAVKLAVLDVMKRSEPKSKVPESQKRN"
XX
SQ   Sequence 6275 BP; 1758 A; 1496 C; 1582 G; 1439 T; 0 other;
     ttcttaaaga attgttgttg tggactaaaa ggatggaagg acatcacaat caaccggaat        60
     tcaaatgcaa attatgctgc aatctagaca tatcgaagtc ccatatgatc gtatgcgatc       120
     agtgtcgcct atgggagcac tatcactgtg ccggcgtgag tgaagcgttg catagtcgtc       180
     cgtttatctg caaacagtgc gcagatgaaa atgcagcagg ttctacgatt gctacacgtt       240
     tgcgatcgca aacaaaacgt gcaatgtcca gcaaggcgtc agaaggcaag ccggcttcaa       300
     atattgggag ccaagtgctc tcgaatcgaa gctccagcag tcgagcgtca atcgttaagg       360
     tacagctaga actgattgcg gtagacgaaa agatgagaca gcaagagctc gaagaagaag       420
     acaccattag gcaactagag caacaagaag cacaacggca attagatgaa aggaagcgac       480
     agctagagga acaaaaacgg ctgatggaag aggagtctat tcttcgtcag cgaaggctgg       540
     aagccgataa ggcccgttta ttgaagcaac aatcgattcg tagagaatcg ctggagagga       600
     gaaacgaaat tatgttgcag atttccgaac gtggtagcgt aatcgattca atagcaagtt       660
     ctcgagaaaa ggtatccgac tggttgacga cacacttgca tgatgggaag accgttgaga       720
     aaacattggg gaacgagatt gatcctcgaa ataatatggt tcctgcggcc ccaaatggag       780
     cttcgtcgct aaccttagaa gtacctatga atagggaaaa tgcaaccgtt tcgcgcgcaa       840
     ttcaaccaca acctttagtt gacggaaacc tccgtcgatc accatcggct gggcctgcca       900
     caatgtgtgg cggtggtact gtccgcaaat catcgagctc actatctttc aatagacttc       960
     agggagttcg atcagcggca gtcagagtgc cgttccatcg atttgtggct tcttcaaaac      1020
     cattgcacat caatccggca gcgtattcgt gcccaccggc gattcaccag gttttcgcac      1080
     cgcatgaagg agaaaccgtt tcggctcgaa aatcgcatca tactcatgga ccgtcatgga      1140
     gcactcctgt tcaaagcagt gcagtaccat atttccaacc ggtacagttt gtgccccgta      1200
     actcttttcg ggagattcca catagcacag gttttgcaga tcgaaggcca acgcaaaatc      1260
     atccaacgac gtcgcaaacc tttgcatcgt cgacacaaag cgagcaacca ggcgttctca      1320
     gttcgcaaca aatagcagca cgacaagtcg tcggtaagga cttaccgcat tttggcggaa      1380
     gcccgacaga ttggccgatg ttcatcagta gttttgaaca atctacggta tcatgtggat      1440
     attcaaacgc tgaaaacctc gttcgtctcc aaagaagcct cactggacac gccagggaag      1500
     cagtgcgtag cagactttta ctccccacaa acgtaccgca ggtgatacaa acactccgta      1560
     cactttatgg tcgtccagaa ctgctgatcc ggtcgttaca cgagaagatt cggcggactc      1620
     cgggacccag atatgatcgc cccgaatcga ttctggaatt cggcctagcg gtacagaact      1680
     tcgtcgatca tctccaagcc gcagatcagg aagatcatct agcaaatccg atgcttatgc      1740
     aagaactggt cgagaagcta ccaggtccaa tgaaaatgga ctgggctaga tttaaaggcc      1800
     aacagttgcg ggccgatgtt tcaacgttcg gtgagtttat ggcgaaactt ataaacgcag      1860
     ccagtgaagt aagttttgag cttcctggac tgacaacact aagggacacc gagaaacatc      1920
     aacgaccgaa ggaaaaggct agaattcaaa ctcactcaac cgataaagcg tcggctccta      1980
     cttctactga aaacgggcgc aaaccaccta aggagtgtcg aatttgcgaa cgcggaaatc      2040
     accgagtggc cgagtgctcc aagttcaagc atctcaactt agaggaacgg tggaagcaag      2100
     tacaggacaa gggcctttgt cgaacctgcc tgaacaatca tggcaaatgg ccatgtaaat      2160
     cgtggaaggg gtgtgaaatc gacggatgcc gactcaaaca ccacactctt ctccattctt      2220
     cttctgcgcc tgtcacatca acccactccg tgaatgtttc tgcaaacgaa ttttcatcgg      2280
     atgagagtca aactctattc aggatattac ctgtcgtatt acacgcaaac ggcaaaagcg      2340
     taatggtttt cgcatttatt gacgaaggct ctcaaatctc aatgttagag gagaagattg      2400
     ctaaggatct tggcgtttct ggtcctaaga tacccctcac attacaatgg acaggcaacg      2460
     tgaagcgcaa tgagttgcaa tcagaggagg tcagccttga aatcgcaggc aagcttaacg      2520
     agactcgcta cgaacttcga catgcgcgaa cggtcagtcg tctacttttg ccgaaacaga      2580
     aattgaatta cacggatatg tcttcacgct tcccacatct caaaggactc ccaatagcag      2640
     attacgacga agtacaacca aagctgttga ttggcctgga caaccttcgt ctaggcgttc      2700
     cgctgaagct acgagaggga ggatcttccg atcctatagc cgcaaagtgc cgacttggat      2760
     ggagtgttta cgggcgtgct tcaacgaaat ctgtacccag ggcgatcgtc aattttcaca      2820
     cagcagcagc accaagttca gacgatctac taaatgagca gttgcgagat ttctttatat      2880
     tagaaaataa tggtgcctgt gccttgaatg agaagttaga gtcggatgag gacaagagag      2940
     cgagaaagct acttgaagaa acaacacggc gaacaagatc gggattcgag acgggtctac      3000
     tatggaaagt cgacgatccg aaattcccag atacataccc aatggctatt cgacggatga      3060
     aagcacttga aaggaagtta cgaagcaacc ctacattgat gcaaagagtc agcgaacaac      3120
     tgtgcgactt cgagcgcaaa ggctacgtgc gcaaggttag cgaaccagac tttgcagcta      3180
     tcgatcgtga gaagacatgg tttcttcctt taggggtcgt catcaaccct aagaagccgg      3240
     ggaaaattcg attgatctgg gacgccgcgg cgaaagttaa tggagtttca ttcaactcgt      3300
     atttgctgaa aggtccggat cttctcacgc ctctgcccaa agtgctcagt ggatttcgct      3360
     tgtttccagt agcagtctct ggggatatca gagaaatgtt tctccaaatc aagctgcagt      3420
     ccaatgacag gaatgctcaa atgtttgtat tccgtcacca tcctgatgat cacatccaag      3480
     tctatgcgat aaacgttacg atgtttggct ctacctgttc tccatcctct gcccaattcg      3540
     tgaagaacgc aaacgcagag caatacgcgc tacattatcc acgagcagcg gcagctgtta      3600
     aagaacatca ctacgtagat gactatttgg atagcttcag aacagtcgat gaagcaatac      3660
     aggttgtaaa tgatgtgaag tacgtccatt ctcaaggcgg atttcaaata tgcaatttct      3720
     tgtcaaatga ggaggaagta ttgcaacgaa ctggggagat cgaaccagtt tcgtcaaagg      3780
     aacttgctct cgtacgcggt gagactaccg agtcagttct cggaatgaaa tggattccat      3840
     cggaagacgt ttttacatac acctttgcga tgcgtgacga tctgcgaacg attctcgaag      3900
     atcaacacgt tccgaccaaa cgtgaagtcc tgaaggtgat catgagcctc tttgatccct      3960
     tgggactcgt ttctttcttt ttggttcacg gtaaggtgtt aatgcaagat gtttgggctt      4020
     ctggaatcgg ttgggacgag gaaatcaatg aacagatttt aaaccgctgg cgacaatgga      4080
     ttttccactt cccgcaattg gataccttgc ggattcctcg gtgttatttt ggttcaccgt      4140
     ttcccaaaaa ccttgaccaa ttggaagtac atattctcgt cgatgccagt gactcagcat      4200
     atgctagcgt agcgtattat cggctcgaaa cagagaacgg catccacgta gcactgatct      4260
     gcgggaaaac gaaagttgca ccgctcaaag ttctatcgat tccccgcttg gaactaaagg      4320
     cagctgttct gggtgttcga atgctggaat ctatcaaagg ataccacagt tatgcgatca      4380
     aacgccgaat tatctggagt gactcaagca ctgtactggc ctggatcaga tcagaacacc      4440
     gcagatacaa taagttcgtg gccgtccgcg ttggtgagat cctcacaaca actgacgtcc      4500
     aggagtggag gtgggttccc tctaggatga acagtgctga tcttgccaca aagtggaaga      4560
     atggaccaga tttttctgcc gaaaatgcgt ggctatgtgg gccgtcgttc ctccatcacc      4620
     ctgaatcgtt ctggcctcaa caaaacaaaa ctgtaacgac gtgtgaagag cttcgtccga      4680
     accacgcgca ttcgatgatt cagccgttag tcgacgcatc tagattcagt caatgggaaa      4740
     gactacagcg gacaatggcg ttcgtgttcc gattcatcaa taactcacga ctcaaacgac      4800
     gcggttctgc actgcgactt ggcgttcttc aacaggatga gctgcagcta gccgaaagag      4860
     cactctggaa ggtggcgcaa gcagaagctt ttcctgaaga aatcctcaca ttgtctgaaa      4920
     caaagggtcc tcccgatgca cgtcaccgac gtgtcgctaa atccagcccg atctacaaga      4980
     actggccatt tctcgacgag gacggagtgc tcaggttacg aggcagaatc ggtgctgcaa      5040
     cctttgcacc gatcgaagct aagtatccaa cgattcttcc taggcaacac ctcattacct      5100
     tcctcattac agactggtac caccgcagat tccgccacgc caacagagaa accgtcacaa      5160
     atgaaatgcg acaacgcttc gagatcgcta aacttcgagc cctgatcgag aaagtaacga      5220
     gaaattgtgc gatgtgtcga gtaaagaaag ccgcgccaaa tcctccagcg atgggtccgc      5280
     taccgtctgc acgtttacaa ccgttcgttc gaccattcac atatgtagga gtggattatt      5340
     tcggaccaat attggtcaag gtcggaagaa gccaggtaaa aaggtgggtg gccctattca      5400
     cgtgcctcac tgtccgtgcc gtgcacttag aggtcgtgca cactttatct accgaatcct      5460
     gcatcatggc tgtgcggcgc tttgttgcaa ggcgtggata tccatctgaa ttctattcgg      5520
     acaacgggac gtgtttccaa ggtgctagca aagagcttca aagagaagaa gttgaaagaa      5580
     ggacaaacgc actggcccat acgtttacga ctgcaacgac tcgatggtgt tttatacctc      5640
     cctctgctcc acacatgggc ggtgcctggg agcgcctcgt tcgatcggtc aaggtggccg      5700
     tggcgtctgt tgctgattta ccacgtaaac caagcgatga agtactcgaa acagtcctat      5760
     tggagtccga ggcattgata aacacacgcc ctctcacgta catcccgctg gaatcggcag      5820
     atgaggaggc cttaacgcct aatcattttc tcctgggttc atcgagtgga gataaactag      5880
     cagcaaccga aattgtcgaa acgccagcga tacttcggag cagctggaaa ctcgcccagg      5940
     tcatcactaa gcgattctgg gcaaggtggg taaaggagta cctcccggtt attacccgta      6000
     gatcgaaatg gtttgacgag gtccgggaca taggtgtcgg agacttggtg ttggtagtgg      6060
     acggagcggc gaagggccag tggacaaggg gacgagtgga agcggtgata cctggacggg      6120
     atggaagggt ccggcaagct ttagtccgga ccgcatccgg ggttgatcga aggccagcgg      6180
     tgaaattggc ggtgctcgac gtgatgaagc gtagtgaacc taagtcgaaa gttccagagt      6240
     cccagaagcg taactgaggt tcacgggagg gggga                                 6275
//
ID   BEL-666_AA-LTR repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-666_AA-I;
KW   BEL-666_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-525
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-525
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 69-69 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 525 BP; 173 A; 103 C; 98 G; 151 T; 0 other;
     tgtcacgtca cccccctgca gcagttcaac tgtggccgat agctactgta ggtaccacag        60
     ggatcgattg gtattaccaa tactatctat cgacgaccgt gtgtaaagag gagcgacaag       120
     aaatgggatg tctggcaaat tgagtcaaaa caatgacaat gtgtaatcgc ttgccttggt       180
     aaataccaca acttgaaata ttaaaaaatc tctaaaaata agataaatac ttaagataaa       240
     agcataaatt tagtagttag tagtttggat tgctgcatat ttccactatt tgtagtttat       300
     aagtgaatta ctattattcc gcgtcctact gaggaatcga tgaactattt ggattcgcta       360
     aataaaatta ggatataaat tcttttcaaa ctatctccgt agagattacc cgtagtttcc       420
     cgagaattcg tgatacgatc cccaagtcca gaaggatcac caacaattct taccgacaaa       480
     atatttggtt tgctgacgag attttggaag cctccccacg caaca                       525
//
ID   BEL-667_AA-I repbase;    DNA;    INV; 6391 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-667_;
KW   BEL-667_AA-I; BEL-667_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6391
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6391
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 101-101 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..6356
FT                 /product="BEL-667_AA-I_1p"
FT                 /translation="MSSRTLRSGKVVGEINSVNLCANGGVQVVVTADPEES
FT                 HPGRTCQVCRGLDSDEMVQCDVCSKWHHFQCVGVTQQIENVPWSCTKCESA
FT                 KGVQENKSSAALLQTSGDPSGQSSNSYLNRLSMPPEHQLQHQNQRQQPQQQ
FT                 RTDITASQLALSMAADELSQPKGANQGPFVTSLQWIVSPSQNGSKTPSVSS
FT                 SRSSQAVARLKLQMLEEMRIVERHEAERQRAIAAEEAKREKAFLEQKYQLL
FT                 EQAMSENGSSKHGSMSRTQNWVTATNAHRDELTACRTEDVVDSNMHAGKVQ
FT                 LWNPTIGRIGSTRSSLPEPNPPDPFPAPESMLSCPINPSALTAGMHLGSTN
FT                 QAPFPEQPRRIPISGPSRRVSIAQLPHSGGRGVTAPNASQNFETDPSHRLS
FT                 NNVSIPEYQRFDPPSHRPVLPHQSRPHSSTMRDYRDYNQEEEDEADSYPIS
FT                 RKQLAARQAISKDLPIFSGNPEEWPLFLSTFNSTTALCGFTNEENIVRLQR
FT                 SLKGRAFEAVKSRLLHPSNVSGVMSTLKMLFGQPEVIVHSMMSKINSLPTL
FT                 KQDKLESIVDFAVSVQNFCATVDACGLEEYFYNMTFLHQLVNKLPPSIKLN
FT                 WAQYRLSLPTVNLASFSNWLYHLAEAASAVAIPNTTFEPKPERSDSRMSKK
FT                 SNSFVNAHSEEALSGYHSTATSTAKDAADSCLVCNGSCKSIPKCERFLEFS
FT                 RDSRWATVRDLGLCRRCLRKHSGGCQAKLCGRNGCELKHHELLHNDHKRAP
FT                 KSSNTSPNDASKSAPNQSSESTPQATSSNEHGCHTHQVTSSQVLFRYLPVV
FT                 LHGKNRSIETFAFLDDGSELTLLDEDLADELQLEGETAPLCLLWTGGAKRR
FT                 EDGSKSVQLEITAKHNGSKKYTMRGVRTVAELLLPSQTLNFEEMVAAYPHL
FT                 TGLPITSYQNVRPRILIGMKDQHLSLVQKSREGALHEPIAVKTRLGWTICG
FT                 GGKSDHAAKLVHSVFHICACDSSSDEDLHRMMKDYFAAESLGVVQPKKRLL
FT                 SAEEERAQSLLETYTVLKGNRYETGLLWRYDNVRLPDSFQMALQRLQCLRK
FT                 RMSKDSLLADALNKKISDFVENGYARKLTKEELSQSFSRTWYLPIFPVMNV
FT                 NKPGKIRMVWDAAAEVHGKSLNSALLKGPDQLCELFIILIQFREGRVALTG
FT                 DVREMFLQVLMRPEDQQCQRFLWYDEDGTLSIYVLQVMTFGACCSPSSAQF
FT                 VKNLNAERFKADYPAAVDVIQKRHYVDDMLVSVATEEEAIELAQQVKKVHA
FT                 EGGFEIRNWLSNSKRVVNALDENHTEEKSLDLSTELATEKVLGMWWCTDLD
FT                 TFTYKVGWDRYGRALLEGQNRPTKRQMLRVLMSVFDPLGLIAQVMVYLKIL
FT                 LQDVWRSGIGWDEQVDYNIFERWQTWLKVLPQIEQISIPRCYFSAESTDYE
FT                 SVQLHTFVDASENGMAATCYLRFNNDNNVECSIVAAKTRVAPLKFLSIPRL
FT                 ELQAALIGARLARTLTEALTIQISRRVFWSDSQDVLCWIKSDHRRYSPFVA
FT                 FRISEILELTEMTEWRYVPTDLNVADDGTKWKGLPNLNPRARWFTGPHFLY
FT                 LSEEDWPRSSMKSSTTDLELRPSLMSHFVTTDSVIHFEEYSNWNRIVKVIS
FT                 LLYRFASNCKLKLQRKPIMTGPISNQEFKAAESYIFRQAQQESFPDELALL
FT                 KRSQNNPESSNAPTVVTIPKSSQIHQKSPWLDQCGVLRMRGRITACDYATE
FT                 DAKHPIILHRDHQATKLLIAHYHQKFHHQNHETVINEVRQKFSIPRLRSTY
FT                 AKVRNNCQRCKNDRATPRVPFMADLPAARLDAFTRPFTHVGVDFFGPYEVV
FT                 NGRRVEKRWGLLATCLTIRAIHIEIVHSLSTDSCIMALRNFIARRGKPRTF
FT                 FSDRGTNFVGASRVLREIENTINQEELMKEFTDIDTSWTFLPPSSPHMGGS
FT                 WERLIGSVKKNLMATLSTRKLTDEVLRNLLTEIEGTVNSRPLTHVPVDDDS
FT                 APALTPNHFLLGSSNGSKPLCTSDDSGVALRQGWLLSQVQANRFWKRWVTD
FT                 YLPEITRRTKWFTHTRPIAIDDVVVIVDPKLHRNCWPKGRIICTHLGRDGQ
FT                 PRSATVRTTSGIYERPVAKLAVLDVRRDVT"
XX
SQ   Sequence 6391 BP; 1763 A; 1625 C; 1527 G; 1476 T; 0 other;
     tattattatt ttcgtttatc gcgaatactc tggtcatgtc aagtcgcacc ttacggtccg        60
     gcaaagtggt tggtgagata aatagtgtga atctatgtgc aaatggtggt gtgcaagtgg       120
     tggtcacggc agatccagag gagtcccacc ccggacgaac gtgccaagta tgtcgtgggc       180
     tggattcaga tgagatggtg caatgcgacg tgtgttctaa gtggcatcac ttccaatgtg       240
     taggagtcac gcagcaaata gaaaatgttc cctggagttg taccaaatgc gagtccgcga       300
     aaggtgtcca ggaaaacaag tcttctgcag ctcttcttca gacaagcggt gatccatcag       360
     ggcagtcatc taattcgtat ctgaaccggc tctcaatgcc gccagagcat cagcttcagc       420
     atcaaaatca gcgccaacaa ccccagcaac agcgaactga tataacagct agtcaattag       480
     ccctctccat ggcagctgat gagttgagcc aacccaaggg agcaaatcaa ggaccgtttg       540
     ttacctcgtt gcaatggatt gtgtcaccgt ctcaaaacgg atctaaaact ccatcggtgt       600
     catcgagtcg ctcttcccaa gccgtcgcta ggctgaaact tcagatgctg gaggagatga       660
     ggatcgtcga gcggcatgaa gcagagcggc agcgtgcaat agcagcggag gaagcaaaac       720
     gagagaaagc attcctggag cagaagtatc aactgttgga gcaagccatg agtgaaaatg       780
     gctcatccaa gcacggttct atgtccagaa cgcagaactg ggtcacagct acgaatgcgc       840
     accgtgatga gctgacagcc tgtcgaacgg aggacgtagt cgattcaaac atgcacgctg       900
     gtaaggtaca gctttggaat ccaactattg ggcgtattgg tagcactcga tcgtcactcc       960
     cagaaccaaa ccctcctgat ccattccccg cgcctgagtc catgctgagc tgccccataa      1020
     atccatctgc actgaccgcc ggaatgcatc tcgggtcgac aaatcaagct ccgtttccgg      1080
     aacagcctcg aaggattcca atatccggac cttcacgtcg agtttcgata gcacagttac      1140
     ctcattctgg cggacgagga gtaactgcgc caaacgcttc acaaaatttc gaaacggatc      1200
     catcccatcg gttgtcgaat aacgtgtcga taccagagta ccaacgattt gacccaccat      1260
     cgcaccgacc agtacttccc caccagagcc gtccgcattc ttccaccatg cgagactacc      1320
     gagactacaa ccaagaggaa gaggatgaag ctgattcata tccgatttct aggaagcagt      1380
     tagctgcccg tcaagccatt tcaaaggatc ttccgatatt ttccggaaac ccggaagagt      1440
     ggcctctgtt cctgtcgacc ttcaacagca caactgctct atgtggattc accaacgaag      1500
     agaacatcgt ccgtttgcag cgtagcttga aaggtcgagc gtttgaagca gtaaaaagcc      1560
     gactgctgca cccttcgaat gtcagcggag ttatgtcgac actcaagatg ctttttgggc      1620
     aaccggaagt catcgtccac tcgatgatgt cgaagatcaa ctcactccca acattgaagc      1680
     aggataaatt agaatcaatc gtggattttg ccgtcagcgt tcaaaacttc tgcgcaacag      1740
     tggacgcgtg cggattagaa gaatacttct acaatatgac cttcctccac cagctcgtca      1800
     acaagcttcc gccatcgatc aagttgaatt gggcgcagta tcgattatca ctaccgacgg      1860
     tcaatttagc atctttcagc aactggctct accatctagc agaagcggca agtgccgtag      1920
     caatcccaaa cactaccttt gaacccaaac ccgaacgtag cgactcacgt atgagcaaga      1980
     agagcaactc gttcgtcaac gcccactccg aagaagcact atcaggttat cactccacag      2040
     cgacatccac cgcgaaagac gcagctgata gctgtcttgt atgcaatgga agctgcaaat      2100
     ctatacccaa atgcgaacgt ttcctggaat tctctcgtga ttctcgctgg gcaactgttc      2160
     gagatttagg cctctgccgc cggtgtctac gcaaacacag tggtggatgc caagcaaaac      2220
     tgtgtggaag gaatggttgc gagctgaagc accacgagtt gctacataac gatcataaga      2280
     gagcacccaa gtcgtccaac acttctccaa atgacgctag caaatcagca ccgaatcaga      2340
     gttcagagtc aacaccacaa gcgacaagtt caaacgagca cggatgtcat actcaccagg      2400
     tcacctctag tcaggtgcta tttcgatacc tacccgtagt acttcacggg aagaaccggt      2460
     caattgaaac atttgccttt ctggacgacg gatcggaact tacgctgctt gacgaagatc      2520
     tagcggatga gctgcagttg gagggagaaa cagcacccct atgcctactc tggactggag      2580
     gagcgaagcg tcgagaggat ggctcaaaga gtgtacagct tgaaatcacc gcaaaacata      2640
     acggatcgaa gaagtacaca atgcgtggag tacgcacagt agctgaactt ctgctcccat      2700
     cacaaacgct caacttcgaa gagatggtcg cagcgtatcc acacctcaca ggtttgccga      2760
     tcacctccta tcagaatgtt cggccgagaa ttctcattgg aatgaaggat cagcaccttt      2820
     cccttgttca gaaaagccgc gaaggagcat tacacgagcc gatcgctgtc aaaactcgtt      2880
     taggatggac aatttgtggg ggaggcaaaa gtgaccatgc cgccaaactg gttcattcag      2940
     tcttccacat ctgcgcttgc gattcgtctt cggatgagga cttacacaga atgatgaaag      3000
     attatttcgc agcagaaagc ctaggagttg ttcaaccgaa aaaacgtctt ctctcggctg      3060
     aagaagagcg agcgcaaagt cttctcgaaa cttacacagt gctaaaagga aaccgttatg      3120
     aaacaggttt attatggcga tatgacaatg ttcggctgcc agacagtttt cagatggccc      3180
     tccaacgtct gcaatgtctt agaaagcgaa tgagcaaaga ctctctgcta gcggatgctc      3240
     tcaacaagaa gattagcgat ttcgtcgaaa atggctacgc caggaagcta accaaagaag      3300
     agctttccca aagcttctcc cggacgtggt accttccgat atttccagta atgaatgtca      3360
     ataagcctgg gaagattcgg atggtgtggg atgctgcagc ggaagtccac ggtaaatccc      3420
     tgaattcagc actgcttaag ggaccagatc agctctgcga attattcatc atacttatcc      3480
     aattccggga aggacgagtt gccttaactg gagatgtgcg tgaaatgttt ctgcaggtgc      3540
     ttatgcgtcc ggaagaccag caatgccagc ggtttctctg gtatgatgaa gacggaactc      3600
     tgtccattta cgttctccag gtgatgacct ttggagcgtg ttgctcacct agtagcgctc      3660
     aatttgtaaa gaatttaaac gccgagcgtt ttaaggctga ctacccagcg gccgttgatg      3720
     tgatccagaa gcgccactat gttgatgaca tgctggtgag tgtggcgaca gaagaagaag      3780
     cgattgaact cgcacagcaa gtaaagaagg tgcatgcaga aggcggcttt gaaatccgta      3840
     attggctcag caattccaag cgcgtcgtca atgccctgga tgagaatcat acggaagaga      3900
     aaagcctcga tttgtcaact gaactcgcca cggaaaaggt actcggtatg tggtggtgta      3960
     ccgacttgga tacctttacc tacaaggttg ggtgggaccg ttacggtcga gcattgctag      4020
     aaggtcaaaa ccgtccaacg aaacgacaga tgctccgtgt actcatgtca gtgttcgatc      4080
     cgcttgggct aatagcccag gttatggtgt acctgaaaat cctactgcaa gacgtctggc      4140
     gctcaggcat cggttgggat gaacaagttg attacaacat attcgaacgt tggcaaacat      4200
     ggctgaaagt cctcccgcaa atcgagcaga tcagcattcc tcggtgctac tttagtgctg      4260
     aaagcaccga ctacgaaagt gtgcaacttc acacctttgt ggatgccagt gaaaacggta      4320
     tggcagccac ttgctacctg cgcttcaaca atgacaacaa tgtggagtgc agtatagttg      4380
     ccgccaaaac cagagttgcg ccgttgaaat tcctttccat acctcgactg gagcttcaag      4440
     cggctttgat tggtgcccga ctagctcgaa cactcaccga agccctcacg attcagattt      4500
     ctcgtcgagt tttctggtcc gactcacaag atgtcctgtg ctggatcaaa tctgatcacc      4560
     gccgctactc tccatttgtg gcgttccgga ttagcgagat tctcgagtta acggaaatga      4620
     cggagtggag atacgtcccc actgatctga acgttgcgga tgacggcaca aaatggaaag      4680
     gacttcccaa tttgaatcct cgagcaagat ggttcaccgg cccgcatttt ctatatctct      4740
     cggaagaaga ttggccacga tcatcgatga aatctagcac caccgatttg gagctccgtc      4800
     ctagcctaat gtcacacttt gtcaccacag attccgtaat acatttcgaa gaatactcta      4860
     attggaaccg gatagtcaag gtcatctctc tactctaccg gtttgcaagc aattgcaagc      4920
     taaaactcca aagaaagcca atcatgactg gacccatttc caatcaagaa ttcaaagctg      4980
     ccgaatcgta tatcttccgc caagctcagc aagaatcttt tcctgatgaa ttggcactcc      5040
     tcaaaagatc acagaataat cctgaatcga gcaatgcgcc aactgttgta acaataccta      5100
     agtcaagtca gattcaccag aaatcacctt ggttagacca atgcggtgta cttaggatgc      5160
     gaggccgaat cactgcctgt gattacgcaa ccgaagatgc gaaacaccca attatacttc      5220
     atcgtgacca ccaagccacc aaattactta ttgcacacta ccatcagaag ttccaccatc      5280
     aaaaccacga gaccgttata aatgaagttc gtcagaaatt cagtattcca cgacttcgat      5340
     cgacatacgc aaaggtgaga aacaactgtc aacgctgcaa gaatgaccgt gcaactccac      5400
     gtgtaccatt tatggccgac ctacctgcag cacgcctgga tgcgttcact cgcccgttta      5460
     cgcacgttgg tgttgatttt ttcggaccgt acgaagttgt caacggtcgc cgagtagaga      5520
     aacgttgggg cttactcgcc acttgcctca caattcgcgc aatccacatc gagattgtcc      5580
     attctctaag tactgattca tgtatcatgg ccctgcgcaa ttttattgca cggagaggta      5640
     aaccgcgaac cttctttagt gaccgaggaa ccaactttgt tggtgcaagt cgagtacttc      5700
     gagaaattga gaatacaatc aatcaagaag agctgatgaa ggagtttacg gatattgata      5760
     ccagctggac gtttctgcct ccctcttcac cgcacatggg cggtagttgg gaacgcctca      5820
     tcggcagcgt caagaaaaat ctaatggcaa ctctatcaac aaggaagctc actgacgaag      5880
     tattgcgtaa cctgctaaca gaaatcgagg gcactgtcaa ctctaggccg cttacgcacg      5940
     ttccggtcga cgatgactca gcccctgcct tgaccccaaa ccactttctc ttaggctcgt      6000
     ccaatggatc gaaacctttg tgtacttcgg atgatagcgg cgtcgcactt cgtcaaggct      6060
     ggttattatc tcaggtacag gccaaccgat tttggaagcg ctgggttacc gattacttgc      6120
     ctgaaataac ccgccgcacc aagtggttta cgcacacaag gccgattgcg atagatgatg      6180
     tagtggtaat agtcgatcct aaacttcacc ggaattgttg gccaaagggc agaatcatct      6240
     gcactcacct aggacgcgat ggtcaaccca gatcggcgac ggtgaggaca acctccggga      6300
     tttatgaacg cccagtagct aagcttgccg tgctggatgt acggcgtgac gtaacgtaag      6360
     ttggcccgtt ggccatcgta cctgggggga c                                     6391
//
ID   BEL-667_AA-LTR repbase;    DNA;    INV; 810 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-667_AA-I;
KW   BEL-667_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-810
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-810
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 60-60 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 810 BP; 294 A; 147 C; 141 G; 228 T; 0 other;
     tgttggcgtt catgccagcg cgccttcact gtaacccgac aatctagcaa cgttcgtacc        60
     cctcggagtc aggtaccgaa acggaacgga atgacagttt tcactgtcat gcggtgagtc       120
     acccaaagca cggacatctg aattgtcagg gatcatgaga agcaaatact agaaaagtga       180
     aagtacatgt tgtttctacg attcaattat ttcaacctaa acctaaatta tagcttaata       240
     ctagtgaatt tgtggcttat gctaaaggta atctaattct atggaaattg ttcgaattta       300
     tattatcttt aaaatatttg tgtagttgaa ctattctatt tggttacacc ttgaattgga       360
     cgtatataac ctagaaggtt gcgatatata ttactactaa aaaggtaaaa atactcaatt       420
     gaaatcccat gcaaatttaa aactaaaatt ccatgcaatc ttaaaactaa ttatagtacg       480
     gcaattagta cggaccagtg acaacgacag ttagttcaga cagtactcat acagaccaaa       540
     cgacataact aagaccagac gcagagcaag tacgaaagtt ggaactaaac gtaagtgata       600
     ttagacaata atcagacatg aaacattgca tcaaacgtat aaacatatat caaacatgaa       660
     acataaattg tgtagacaga aaattgaaat tacatacttt tctaggaaaa taataatcat       720
     ccggtcagaa accaaacaag cgaaattggt tgttcttatt tccgggatta ttatttcgga       780
     atttcccgaa ttggttggca atccccaaca                                        810
//
ID   BEL-668_AA-I repbase;    DNA;    INV; 6915 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-668_;
KW   BEL-668_AA-I; BEL-668_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6915
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6915
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..830
FT                 /product="BEL-668_AA-I_1p"
FT                 /translation="MSFQSNVRQTRSRTRAIEQVNANLTPPGDVDRESSRS
FT                 SADSFIPSMVDSAGGELHDCGGCSRPNNSEMYMVQCQKCSLWYHFSCANVS
FT                 TTTVRTINFVCRKCIPGEDFLLPKSPSVISGISSSSSTRRARIERELQLME
FT                 EEKKLLENLSRERIDMERALREREFQEKLEREKQFIARRHALLSRQDDEEE
FT                 KSVRSMRSSQRSSKRTKDWVRQTRLGDGGGKDTVEQTNASTSANSVHPEDP
FT                 SLANTQGSTPFLDATEDRNRDTSNLW"
FT   CDS           661..6912
FT                 /product="BEL-668_AA-I_2p"
FT                 /translation="GRPGWAMAVVRIPLNKQMPRRLRIPFIQRIQVWQTRR
FT                 EVHPSSTPLKTAIEILPTCGETRANTGSEVKSIPQTLGSITIEDSEDSADG
FT                 AVGLNHNECGPSQNPSNLPLVDLQPYEDILKLEEMPPTGAIPKINRFGGHC
FT                 YKRWSAETGELRKQNTLLQQQQSEAELRVVHELMVKHRTDMDTRRKREMEL
FT                 VHRISSLEKQHADELKQVCEAEKDLRTQIERRDVEETALKIRIETLEKQLV
FT                 EEKNRSRHSEADMRDQLTRSERECEALRLQLAELETEIQCLREMEQQLHGQ
FT                 LEAARRSEQEAVRQWREAEKEYWDLHDEVEQVISRNGDRLTDSGSSPPLPP
FT                 PPASWLESNTLGTEISSASELNPSFPPPPPWVSVNNVLQGDGREFLPLSGQ
FT                 SVGGMINTNPMVPPGSNVHSQLSSQFLVPPYVRSLGPSPQQLAARQVVTKE
FT                 LPIFSGDPIDWPLFISSYQHSTETCGYSNSENLLRLQRSLRGSAKDSVSSF
FT                 LLHPSTVPQVMSTLQQLYGRPEQIVNNMIAKVRATPPPKPDRLETLVSFGL
FT                 VVQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFSWALYQEQVPVVDL
FT                 NVFSDYMAKVSSAASGVTQLASVLQKPPKEERNRQKEKSFVNTHVSTDQPR
FT                 TTHREDAEKSGPNGGKQKEKDVNKSNSISCAVCNVDNHRIESCTSFKGLDL
FT                 DGRWKAVKSHRLCARCLTSHARWPCKGEVCGINNCPKRHHRLLHFDPPAAA
FT                 KTTNAVVTVHRQLSSSTLFRILPVTLYGCKGQVDTYAFLDDGSSVTLVEQS
FT                 IADALGARGETETLRIEWTGGINKTIAGTEVVMMEISEAGGRKKYRLSEVY
FT                 TVDNLGLPQQTTDYAELSTRFAHLGKLPVKSFRSAVPGILIGQSNAHLLAT
FT                 LKLREGKLSDPIATKTRIGWTVSGSLRKPTMHRQLHMQAEPTDADLHEYVR
FT                 HFFDVESLGVAVVPAVKSAEEQRAYQILEATTRRLSNDKYETGLLWKHDYV
FT                 EFPDSRPMAERRFKCLEKRLQQDPVLYDGVRRQIEDFKAKGYIHQATAEEI
FT                 EEFDLRRTWYLPIGVVINAKKPGKVRIIWDAAAKVDGTSLNSMLLKGPDLL
FT                 TPLMSVMFPYRERQVAVSADIREMFLQILIRKEDHSALLFPYRDSPELPMS
FT                 TMVSDVAIFGAACSPAHAQYVKNLNAEEQEGEFPRGAAAVKKRHYVDDYVD
FT                 SFDTAEEAVQVALEVVEVHKRAGFHIRNWMSSDSRVLEMLGEANRESAKAM
FT                 LPEKEVAFERVLGMAWMQEDDVFTFSLQCWEKVRNLLEDAMTPTKREMLRL
FT                 VMSIYDPLGLVASFVIHGKVLIQDVWRTETDWDSKIPTEIAERWIEWIAVL
FT                 KRMNELRIPRCYFPGYTPESYKNVELHVFVDASAQAYAAVAYFRIFDQGQF
FT                 RVALVSSKTKVAPLRGLSIPRLELMAALLGSRLRRTIEENHSLKIQRTCFW
FT                 SDSSTVCSWIKSDTRRYRQFVAFRVDEILSLSSVDEWRWISTKLNVADEAT
FT                 KWGKGPTCNVDSRWFQGPEFLYSNEAEWIDIPEESADESDKELREAFVFSH
FT                 LVRQPMVDVDRFSRFERMLRALAYVHHFVETLRAGKNKVADTVGLTSAEIQ
FT                 KAERTLWLIAQSEAFPDEVAIHKQNSARNSDQQKQIGVSSSIVKQSPFADE
FT                 CGVLRVGSRAAEAQVLTYDAKFPIILPRNHRITMLMLDFYHRKYGHANDET
FT                 VVNEVRQKFYVPRLRVEVRQIRKRCMWCRVYKTIPIPPKMGPLPAVRLQPD
FT                 VRPFTFVGIDLFGPYSLKIGRTVAKRWVCLFTCLTIRAIHLEVVASLTTDA
FT                 CKKAIRRFVARRGSPQEIYSDNGTNFVGASRELQDEINRINTELGSTFTNA
FT                 QTQWRFNPPAAPHMGGCWERMVRAVKTALGSIPEARKLDEESFVTVLAEAE
FT                 SMVNSRPLTFIPLETAEQESLTPNHFLLLSSNGVREPEKFPTDEGAALRNS
FT                 WNMVKHTLDNFWRRWVVEYLPTIIRRTKWFRDVKPIQVGDLVFVVDENVRN
FT                 RWLRGRVIKTIPGKDGVSRRAEVRTSGGILKRPVTKLAVLDVEGFSDAKPE
FT                 VEATRGG"
XX
SQ   Sequence 6915 BP; 1921 A; 1563 C; 1919 G; 1512 T; 0 other;
     gtttactcaa agattttacc ggaatagaga tgagtttcca gtctaatgtg cgacagaccc        60
     ggtcccggac gagagctatt gagcaggtga atgctaacct cactccaccg ggtgacgtcg       120
     atagagagtc aagtagatcg tcggcagatt cgttcatccc gtccatggtt gatagcgctg       180
     gaggtgagct gcatgactgt ggcggctgta gtcggccgaa caactccgag atgtacatgg       240
     tgcagtgcca gaaatgcagc ctctggtacc atttctcatg tgcgaatgtc agcactacga       300
     cggtacgtac cattaacttc gtttgtagaa agtgtattcc gggtgaggat tttttacttc       360
     cgaaatcacc aagcgtaatt agtggtattt cgagttcttc gagtactcgt agagcaagaa       420
     tagaacgcga gcttcagctt atggaggaag agaagaagct attggagaat ctaagccgcg       480
     agaggattga catggaacgc gcacttcgcg aacgggaatt ccaagagaag ttagagcgtg       540
     aaaaacagtt tatcgctcgg aggcacgcat tgctgagccg gcaggatgac gaagaggaaa       600
     aaagtgtgcg cagtatgcga agcagccaga ggtcatcgaa gcgtacgaaa gattgggtaa       660
     ggcagaccag gttgggcgat ggcggtggta aggataccgt tgaacaaaca aatgcctcga       720
     cgtctgcgaa ttccgttcat ccagaggatc caagtctggc aaacacgcag ggaagtacac       780
     ccttcctcga cgccactgaa gaccgcaatc gagatacttc caacctgtgg tgaaaccagg       840
     gcgaacacgg gatcagaggt gaagtcgatc ccacaaacct tgggaagcat cacaattgaa       900
     gattcggaag attccgccga tggtgctgtc ggattgaacc ataacgagtg tggtccgagt       960
     caaaatccgt ccaatttgcc tcttgtggat ctacagccct atgaagacat cttaaagctg      1020
     gaagagatgc cgccaaccgg cgcgatcccg aaaataaatc gttttggtgg acactgctac      1080
     aaacgctgga gtgctgaaac cggagagctg cgaaagcaga atactctact acagcaacaa      1140
     caatccgaag ccgaactaag ggtcgtccac gagttgatgg tgaaacacag aacggacatg      1200
     gacacgcggc gaaagcgtga gatggagctg gttcaccgaa tctccagctt agaaaaacag      1260
     cacgctgatg agctgaaaca agtttgtgaa gcggaaaaag atttgcgtac tcagatcgaa      1320
     cgtcgtgatg tggaagaaac agcactcaaa attaggattg agaccctgga aaaacagctg      1380
     gtcgaggaga aaaaccgatc tcgccattca gaagcagata tgcgggacca actcacacga      1440
     agcgagcgag aatgcgaagc gcttcggcta cagctagctg aactggagac tgaaatccag      1500
     tgcctacgcg aaatggaaca acagttgcat gggcagctag aagcggctcg tcgaagcgaa      1560
     caggaagccg ttcggcagtg gagagaggca gagaaggaat actgggactt gcacgacgag      1620
     gtagaacagg tcatcagtcg taacggcgat cgtttaacgg acagtggcag ctcacccccg      1680
     ttacctccgc ccccagcgtc gtggttggaa tcgaacacgc tgggcacaga aatatcttcc      1740
     gctagtgagt taaacccctc ttttcctcca ccccctcctt gggtatcggt caataatgtt      1800
     ctgcagggtg acggtcgaga attccttccg ttatcgggac aaagtgttgg tgggatgatc      1860
     aatacgaatc ctatggttcc tccagggtca aatgtccatt cgcaactgtc atctcagttt      1920
     ctggtgccgc cttatgtacg cagcctcggt ccttcgcctc agcagttagc ggctcgacag      1980
     gttgtgacca aagagcttcc aattttctcc ggggacccga tcgattggcc gctgtttata      2040
     agtagctacc aacattcaac ggaaacttgc gggtacagca actctgagaa tcttttgcgg      2100
     ctacaacgca gtcttagagg tagtgcgaag gactccgtca gcagcttttt actccacccg      2160
     tcgacagtac cccaggtcat gtctacattg cagcaactgt acggccgccc ggaacagatc      2220
     gtgaacaaca tgatcgccaa ggttcgggca actcctcctc ctaaaccgga ccggttggaa      2280
     acactggtca gttttggact agtagtccag aatctttgtg gacaccttaa ggcagttggt      2340
     ctagagcggc atctggcaaa tccaatccta cttcaagagc tggttgacaa gctacccgcg      2400
     acggtgaagt ttagttgggc gctctaccaa gaacaggttc cggtagtaga tctgaacgtg      2460
     ttcagtgact atatggcgaa ggtatcttca gcagcgagtg gcgttactca gttagctagc      2520
     gtgttacaaa aaccgccaaa ggaggaacgg aatagacaga aggagaaatc gtttgttaat      2580
     acccatgttt ccacggatca accaagaacg acccatcgag aagacgcaga gaaaagcgga      2640
     ccaaatggtg ggaagcagaa ggagaaggat gtcaacaaaa gcaacagtat ttcgtgcgcc      2700
     gtttgcaacg tcgacaatca ccggatcgag agctgcacat cgttcaaagg actagatttg      2760
     gatgggagat ggaaagcagt gaagtcgcat agactctgtg ctcggtgcct cacatcacac      2820
     gcacgttggc cttgcaaagg ggaggtttgt ggaatcaaca actgccctaa gcgacatcac      2880
     cgtctactcc atttcgatcc accagcggcg gctaagacga ccaatgcggt tgtaacagtt      2940
     catcgtcaac tgtcatcgtc aactcttttt cgtattctcc cagtcacttt gtatggatgc      3000
     aaaggtcagg tggataccta cgccttcctg gatgatggat cgtcggtgac tctcgtggaa      3060
     cagtcaattg cagatgctct tggagccaga ggagagacgg agacgttgcg tatcgaatgg      3120
     actggaggca ttaacaagac aattgctggg acagaagtcg tcatgatgga gatctctgaa      3180
     gcaggtggca gaaaaaagta caggttgtca gaggtataca cagtagacaa tcttggcttg      3240
     ccacaacaga ctacggatta cgctgagctt tcaacacgat ttgcacacct cggcaaactg      3300
     ccagtcaaga gcttccgctc cgctgtaccg ggaatcttga ttgggcagag taatgcgcac      3360
     ttgttagcca cgttgaagct gcgtgagggc aaattgagtg atcctattgc gactaagact      3420
     cgaattggat ggacggtgag tggcagtctg cgaaagccta caatgcatag gcaactccac      3480
     atgcaggctg agcctacaga cgctgatctt cacgaatatg ttcgccactt tttcgacgtc      3540
     gagagcttgg gtgtagctgt ggttccagcg gtgaaaagcg ccgaggagca acgtgcgtat      3600
     caaattctag aagcgacaac gcggcggctg agcaacgata agtacgagac tggcctgctc      3660
     tggaaacacg actacgtgga attccccgac agtcgaccga tggcggagag gcggttcaag      3720
     tgccttgaaa agcgcttaca acaggatcca gtgctttacg atggcgtccg cagacaaata      3780
     gaggatttca aagccaaagg atatattcac caagcaacgg cagaggagat tgaagaattc      3840
     gatctgcgtc gaacatggta cctgccgatt ggagtcgtca ttaatgcgaa aaagccagga      3900
     aaagttcgca taatttggga tgcagcagcg aaagtcgacg gtacatctct gaactcaatg      3960
     ttactgaagg ggccggacct tctaacgccg ttaatgtctg ttatgtttcc gtaccgggag      4020
     cgacaagtgg cagtttccgc agacatccga gaaatgtttc tgcaaatact gatccgcaag      4080
     gaagaccaca gcgcgctgct gtttccatac agggactctc cagagctgcc gatgagcacc      4140
     atggtatccg acgtggcgat attcggagcg gcgtgctcac ccgctcacgc gcagtatgtc      4200
     aaaaatctaa atgctgaaga acaagaaggg gaatttccaa gaggtgcagc ggcagttaaa      4260
     aaacgacact acgtcgatga ttacgtggat agtttcgata ctgcagagga agcggttcaa      4320
     gtggcattag aagtggtcga ggtgcacaag cgagcagggt ttcatatccg caactggatg      4380
     tcaagcgaca gcagggtgct cgaaatgctg ggtgaagcta atcgggagtc agcgaaagcc      4440
     atgctgccgg aaaaggaggt tgcatttgag cgagtgctgg gaatggcgtg gatgcaagaa      4500
     gatgacgtat tcacattttc gctacagtgt tgggaaaaag tgcgtaactt gctggaggac      4560
     gccatgactc caactaaaag ggaaatgctg cgcttggtca tgagcatcta cgatccgttg      4620
     ggattagtag cctcgttcgt aatacacgga aaagttctaa ttcaggacgt gtggcggaca      4680
     gaaacagact gggacagtaa aattccaacg gagatcgcag aaaggtggat agagtggata      4740
     gcggtgctca agcggatgaa cgaactgcgt atccctcgct gctatttccc agggtatact      4800
     cctgaaagct acaaaaatgt cgaactacac gttttcgtag acgctagcgc ccaggcttac      4860
     gccgctgtgg cgtattttcg catcttcgac caaggtcagt tcagagtggc gcttgtttcg      4920
     tcgaaaacca aggttgcacc acttcgagga ctttcgattc cacggctgga gttgatggca      4980
     gcgttactag gatcacgctt acggaggaca attgaagaaa accactcgtt gaagatccag      5040
     agaacttgct tttggagtga ctcgtcgacg gtttgttcgt ggattaaatc ggacacgcgt      5100
     cgctatcgtc aatttgtcgc gttcagagta gatgaaatat taagtctttc gagcgtcgat      5160
     gaatggcggt ggatttctac gaagctcaac gtcgcagatg aagctaccaa gtggggaaaa      5220
     ggtcccacgt gtaacgtaga tagtcgctgg tttcaaggac cggagtttct ctacagcaac      5280
     gaagcagaat ggatagatat tccagaagaa agtgcggatg aaagcgacaa agagttacgg      5340
     gaagcctttg tgttcagcca tctggttaga caaccaatgg tggatgtgga cagattctca      5400
     cggttcgaaa gaatgctgcg tgcattggca tacgtccatc attttgtgga gacactccgt      5460
     gctggaaaga ataaagtagc agatactgta gggttgacaa gtgcagaaat ccagaaagcg      5520
     gaacggactt tgtggttgat tgcacaatct gaggcttttc ctgacgaggt agcaatacat      5580
     aagcaaaatt cggcacgaaa cagtgatcaa cagaaacaaa taggagtttc cagcagtatc      5640
     gtgaagcagt cgccattcgc cgatgagtgc ggagttttgc gggtaggcag cagagcggca      5700
     gaagcacagg tgcttaccta tgatgccaag tttcccatta tactacctag aaatcaccgg      5760
     atcacaatgc taatgctgga tttctatcat cgtaagtacg gtcatgctaa tgatgagacc      5820
     gtcgtcaacg aggtgcgtca gaaattctac gtgccacggc tacgagttga agttcgacaa      5880
     attagaaagc gctgcatgtg gtgccgcgtc tacaagacaa taccgattcc accaaaaatg      5940
     gggccgcttc cagcggtacg actacagcca gacgtacgcc ccttcacgtt tgtgggcata      6000
     gacctttttg gaccatattc gttaaagata ggacgtactg tagcgaagcg ctgggtttgc      6060
     cttttcactt gcctcacgat cagagctata catctagagg tggttgctag tctgaccacc      6120
     gatgcgtgta aaaaggcgat cagaagattt gtagctagac gaggctcccc acaggagatc      6180
     tactccgaca acggaacaaa ttttgtaggg gctagtcggg aactgcagga tgagatcaac      6240
     cgaatcaata ccgaattggg cagtaccttt acgaacgctc aaacccagtg gcgattcaat      6300
     ccccctgctg cccctcatat gggtggctgt tgggaaagaa tggttcgtgc cgtgaaaaca      6360
     gctctaggat ccatcccgga agcgaggaag ctggatgaag aatcgtttgt tacggtgctg      6420
     gcagaagcag aaagcatggt gaactccaga ccactaacgt tcatccccct agaaacggca      6480
     gaacaagaat cgttgacccc gaatcacttt ctgcttttaa gttcaaacgg cgtaagagaa      6540
     cccgagaagt ttccgacgga tgaaggagca gcgttgcgga acagctggaa catggtcaag      6600
     cacactcttg acaacttttg gcgtcgatgg gtggtggaat atttgccaac gataatacgt      6660
     cggacgaagt ggttccggga tgtaaaacca attcaggtag gggaccttgt gttcgtggtc      6720
     gacgagaatg tgaggaatcg ctggttgcgt ggacgagtga tcaagacgat tccaggaaag      6780
     gatggagtat cgcgtcgagc ggaagtgagg acatcaggag gaattttgaa acgaccagtt      6840
     acgaagttgg ctgtgctgga cgtagaagga tttagtgacg ccaaaccgga agtcgaggcg      6900
     acacgggggg gagga                                                       6915
//
ID   BEL-668_AA-LTR repbase;    DNA;    INV; 433 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-668_AA-I;
KW   BEL-668_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-433
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-433
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 70-70 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 433 BP; 133 A; 64 C; 89 G; 132 T; 15 other;
     tgttcgccgc atcagcccac tgtcgtgagt tatcgtgagc cgctccctaa ctcawcaggc        60
     agtcaatcag gctgtcgtag gtaggagaag atgagwagtg tattkataag cagattgttt       120
     tgaatmgaag attaaatttg atcctaaaag gtagaaagtg tgaagttgca aggtawamgt       180
     tawttaaact aattaattac agaaaattga attgwtagtt tatwatagat ttgtagcatt       240
     acgaaagttm tttttgttac tgwtagcgaa ttgattgggc taaactwtcg gagastaaaa       300
     tgtaagtaga ttgataagga atttatwctg aacttggtta acaataatac attacttgcm       360
     gctttgagct gatcatactc ccacaaatac gcgagtttct gctgcaagat ttccgaaaaa       420
     tctcttcgct aca                                                          433
//
ID   BEL-669_AA-I repbase;    DNA;    INV; 6227 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-669_;
KW   BEL-669_AA-I; BEL-669_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6227
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6225
FT                 /product="BEL-669_AA-I_1p"
FT                 /translation="MSKSSASTPLPDYTVSCVACDRPPTADNFVCCDRCAE
FT                 WWHMSCAGVTDSIEDQDWLCTKCLPAPSITITSNSSARQARIQLELQRLTE
FT                 QRELEKMALNVELERKFLERKYAMLEKSLKEDEDDHRSHRSRNSRTDASKR
FT                 KKDIQDWVEQQSNENHDMKSGKSPSVRSFVSRFEQMVEKPSSVAKEEEEQL
FT                 NGAVGGKVTVDTQGQVGAVRARLNRNLASASLSGNLVASPIVSPSVPLQRQ
FT                 RAEEHNKAATDILQLPIGPATDYTLDQINALQEYLAQCKLQLVGSAKAPEQ
FT                 PPKATIDVSKGTIPKTHSTQHHPRECLQLSSKENLKSSEVPIAANQQAEPL
FT                 FGSKPLSKSRALVEKRNNHRSHEQPRNYTSEQRALSPLQQIREEANQRFRN
FT                 VERAEKLARSKEANQLNLPQQHQQMLPTAIQQSNGNHIQTMQIPVPQIDQI
FT                 GFGPTNQQLAARQVLPRDLPAFSGNPADWPVFLSQYEYTTEACGYSDGENM
FT                 IRLQRCLKGPAWESVRSRLILPSSVPQVMQALQMRYGRSDMLIESLIGRVR
FT                 SAPSPRADRLETLIEFGTMVQALCDHVIAANLHDHLANPTLLKDLVEKLPA
FT                 EYRMRWAAHRRLQIAVNLKTFSDFMEDIVNDAYSVSSFPSTHESYNKSDHS
FT                 RQRDRNLIHSEAEKANCTVCNKDGHRVKECNVFLALSVDDRWKKVQCLQLC
FT                 RICLSDHGRRACRINKRCDIDGCQYRHNPLLHSPKKSVNQSTEAHVQYHTN
FT                 ETNYSSLLFRIIPITLRNGTKTIDTYAFLDEGSSVTMIESSIAKELNIFGY
FT                 TKPLCLKWTGDISREERESQLVSVIISGSNSSKEYQMNDVQTVQTLDLPIQ
FT                 SLPIEELVKMYKHLRGIPIQGYRNAVPKLLIGVNDLRLALPLKAREGVNGA
FT                 PVAVKTRLGWCVYGGQRNQNQPKYSYHVCECDGEEGIGAALRNYFSFEEAG
FT                 IKSAGPTMTEEEKRAQRTLELTTKRIGDRFECGLLWRYDEVELPDSYSMAL
FT                 KRLQCLERRMAKDPALKQNIQQQMEEYQAKGYAHRATVQEISDTDVRRTWY
FT                 LPLGAVTNPNKPGKVRLIWDASAKVDGISLNSLLLKGPDFVTPLCFVMFRF
FT                 RQHSVAVSADLKEMFHQVRIRDVDRPAQSFLYRDDPSSDPQVFRMDVATFG
FT                 ATCSPAIAQYVKNTNAEAFKKEHPRAVEGIVFNHYVDDYLDSFSNEIEAKQ
FT                 VADEVRHIHGQGGFELRNWCSNSVTVLQHLGENVEIPVKQLSFKNEEQSER
FT                 VLGMRWATDTDEFHFSATMRSDIAFIVTNNLKPTKRQILRCVMSLFDPLGL
FT                 LAPYLVFGKVLIQEVWRIGINWDEKVDDKLFEQWRQWISMITTINNVRISR
FT                 SYFRKAGVEAFQSIQLHTFTDAGRDACACVSYLRIVNNEGEIEVALVTAKT
FT                 KVVPLKPVTIPRLELQACVLGARLAKYIVEGHSFVITKRFFWSDSSAALSW
FT                 INADPRKYGPYVSFRVAEILETTDRSEWRWVASGDNPADEATKWGAGPYFK
FT                 TNSIWYNGPGFLYLPEQDWTRDAPDAAGHEELRACYLHRELPIPQNILDIS
FT                 RFSKWTRLQRAMSYVHRFINNCRYKKRYTGPLQKSELQKAETSIFRLVQWQ
FT                 SFPDEMVTLMTNRLLPPREQRFLEKSSVIFKMTPILDEQQILRVDGRIAAV
FT                 ERAIADVKHPIILPRKHHVTSLLIEHLHRQLQHGNKETLVNEIRQRFCIPK
FT                 LRTLVSSIVYRCFICKIRRARPIVPQMASLPQARLSPFVRPFSYVGLDYFG
FT                 PLLVKVGRSHSKRWIALFTCMTVRAVHLEVAHNMSTESCIACVRRFLCRRG
FT                 FPVEIHSDNGTNFQGAERLLREQINSGLAETFTSTTTAWHFIPPATPHMGG
FT                 AWERLVRSVKTALTAAYNNDKLDDEALQTMIAEAESIVNSRPLTYLPLDSA
FT                 EQEAITPNHFLLGSSQGVKQPAVQGGHDPAILKRSWTAIQVYLDAFWRRWV
FT                 REYMPTLTKRTKWFGPTRNVQAGDLVIIIDESRRNGWIRGRVLEPITAADG
FT                 KVRQAVVQSSKGIQRRAVAKMAVLEVAKADGTEEESGFHRGE"
XX
SQ   Sequence 6227 BP; 1785 A; 1468 C; 1527 G; 1447 T; 0 other;
     ttcttcaaag aattcaccga gatgtcgaag tcgtccgcga gtactccact tcccgactac        60
     acggtgagtt gtgttgcttg cgatcgccct cccacggcag ataatttcgt ttgctgcgat       120
     cgatgtgcag aatggtggca tatgtcctgt gctggagtta cagactccat cgaagaccag       180
     gattggttgt gcacaaaatg tttgccggct ccgtcaatca ccatcacatc gaattcgtca       240
     gctcgtcagg ccagaattca actcgaactt cagcggctaa ccgaacagcg cgaacttgaa       300
     aagatggcct taaatgtgga actggaaagg aaatttttgg aacgaaagta cgcaatgttg       360
     gagaaatcgc tgaaggagga tgaagacgac catcgctctc atcggagccg caatagtcgg       420
     acggatgcct caaagcgtaa aaaagacatc caggattggg tcgagcaaca gtcaaacgag       480
     aatcacgaca tgaaatctgg taaaagtccc tcggttagat cctttgtctc caggtttgag       540
     cagatggtcg aaaaaccgtc gtccgttgcc aaagaagagg aggaacagtt gaacggtgct       600
     gttggaggta aggtaaccgt ggatacccaa ggccaagtag gtgctgttcg agcaaggctt       660
     aatcgaaatc tcgcgtctgc ctcactgtct ggaaacctgg ttgcatcgcc catcgtgtcg       720
     ccctcagtgc ccctgcaaag acaaagagct gaagagcata ataaagccgc aactgacatc       780
     cttcagcttc cgatagggcc cgccaccgac tatacgttag atcagatcaa cgctctacaa       840
     gagtacttag ctcaatgcaa gttgcagtta gtggggtctg caaaggctcc ggagcagcca       900
     ccaaaagcta caatcgatgt gtccaaaggc accattccca aaacccactc aacccaacat       960
     catccgagag aatgtctaca gctaagctcg aaggagaatt tgaaatcttc ggaagtaccg      1020
     atcgcggcta atcagcaagc agagcccctg tttggttcaa aaccactttc aaaatctcgc      1080
     gcactcgtgg agaagcgaaa caatcaccgt tcacacgagc agccgcgcaa ctacacgtcg      1140
     gaacaaaggg cgctgagccc acttcagcaa attcgagaag aagcaaacca gcgattcaga      1200
     aacgttgaac gtgctgaaaa actagctcga agtaaggaag cgaatcagtt aaatttgccg      1260
     caacaacatc agcaaatgct gcccacagcg attcagcaaa gcaacggaaa ccatatccaa      1320
     acgatgcaaa tacccgttcc ccaaattgat cagattggat tcggacccac caatcagcaa      1380
     ttggctgcca gacaagtact gcctcgtgat ctgcctgcat tttcaggaaa tcctgcggat      1440
     tggcccgtgt ttcttagcca atacgaatac acgactgaag cgtgtggata cagcgatgga      1500
     gaaaatatga tccgtcttca acgttgcctt aaaggtcctg cttgggaatc cgtgcgcagt      1560
     cgtttgatac ttccttcttc cgtcccccaa gtaatgcaag cccttcaaat gcgttatggt      1620
     cgttcggaca tgctaataga gtctttgatt ggaagagttc gatcagctcc atccccaagg      1680
     gccgatagat tggagactct gatcgaattt ggtaccatgg tacaagcact atgtgatcac      1740
     gttatagctg ccaatctaca tgatcatctg gcaaatccaa cgttgctaaa ggatttggtg      1800
     gagaaactac ccgccgaata caggatgagg tgggctgctc atcggagact acagatagcg      1860
     gttaatctga agacattcag tgactttatg gaggacatcg tcaacgatgc gtatagtgtg      1920
     tcaagcttcc caagtactca tgaaagttac aacaaatctg atcattcgag gcagagagat      1980
     aggaatttga ttcattccga agcagagaag gccaattgca ctgtttgcaa caaagatgga      2040
     catcgcgtga aggaatgcaa tgttttcctt gcattatcag tcgacgatcg ttggaaaaaa      2100
     gtgcagtgtc tacagctgtg ccgtatctgc ttgtcagacc atggccgcag agcctgtcgt      2160
     ataaataaac ggtgtgacat agatggatgc caatatcgac acaatcctct gttgcattca      2220
     ccaaaaaaga gcgtaaacca atccactgag gcacatgtgc agtaccacac caacgaaacg      2280
     aattactctt ctctattatt tcgtatcatc ccgataactt tgcgtaatgg tacgaagact      2340
     atcgatacat acgccttttt ggacgaagga tcgtccgtga cgatgattga aagcagtata      2400
     gctaaggaac tgaatatttt tggatacacc aaacccctat gtcttaagtg gacaggagat      2460
     atatccagag aagaacgtga atcgcaactt gtctcggtta tcatctcggg tagcaatagc      2520
     tcaaaggagt atcaaatgaa cgatgtgcaa acagttcaga ctttggatct ccctattcaa      2580
     agtctcccaa ttgaagagct cgttaagatg tacaaacacc tcagaggaat tcctatccaa      2640
     gggtatcgta atgctgttcc gaagttgctc atcggcgtga atgacttacg actggcgctt      2700
     ccactgaaag ctcgcgaagg cgtgaatggt gctccagtgg ccgtaaagac tcgcttgggc      2760
     tggtgcgtct acggtgggca gcgaaatcaa aatcaaccga agtacagcta ccacgtatgt      2820
     gaatgcgacg gcgaagaagg tattggagca gcgctgagga actatttttc cttcgaggag      2880
     gcaggtataa aatcagcagg accgacaatg accgaagaag aaaaacgagc gcagcgcaca      2940
     cttgaattga ctacaaaacg aattggcgac cgttttgaat gcgggctact gtggagatac      3000
     gacgaagtag agctaccaga cagttactcc atggccttaa aacgactaca atgtttggag      3060
     cgcagaatgg ctaaggatcc agcactcaag caaaacattc agcagcaaat ggaagagtac      3120
     caggctaagg ggtacgcaca ccgagcaacc gtacaagaaa tatccgatac ggatgttcgt      3180
     cgaacatggt accttcctct tggcgcggta acgaatccca acaagccagg taaagtaagg      3240
     ttgatatggg acgcgtccgc gaaagtcgat ggtatctctt tgaattcact tctcctgaaa      3300
     ggtcctgact ttgtaactcc actttgtttt gtcatgttcc gctttcgtca acactctgtg      3360
     gcggtaagtg cagacctgaa agagatgttc catcaggtcc gcataaggga cgtagatcgt      3420
     ccagcgcaga gcttcctcta ccgagatgat ccctcgtcag atcctcaggt ttttcgtatg      3480
     gacgtcgcca cgtttggggc aacctgctca ccggccatcg ctcagtacgt caaaaatact      3540
     aacgctgaag ccttcaaaaa ggagcatcct cgagctgtcg agggaatcgt attcaaccat      3600
     tatgtggacg attatctcga cagtttttcc aacgaaatcg aggcgaaaca agtcgcagat      3660
     gaagtaagac acattcacgg gcagggtggc ttcgaacttc gcaactggtg ttccaatagc      3720
     gtaacagtcc tgcagcacct aggagaaaat gttgaaattc cggtgaagca gttgtctttc      3780
     aagaacgaag aacaatcgga acgtgtcctg ggaatgcgct gggcaacaga taccgatgaa      3840
     ttccacttct cggcaacgat gcgaagtgac attgcattca tagtcacgaa taacctcaaa      3900
     cctacgaagc gacaaattct cagatgtgta atgtcgttat ttgatccact aggcctcctt      3960
     gcaccgtatt tggtgttcgg aaaggtacta atccaagaag tatggcgaat aggaatcaac      4020
     tgggatgaga aagtggacga caagctattc gaacagtggc ggcaatggat cagtatgatt      4080
     actaccatca acaacgttcg catttcacga agctactttc ggaaggcagg agtcgaagcg      4140
     tttcaaagca ttcagctcca taccttcacc gacgctggtc gagacgcctg tgcatgtgtt      4200
     tcatatctcc gaatagttaa caacgaaggt gaaatagagg ttgcactagt tactgctaaa      4260
     acgaaggtcg ttccgcttaa acctgtgaca atacctcgtt tggagctcca ggcatgtgta      4320
     ttaggggctc gtcttgcgaa atacattgta gaaggacact cattcgtgat caccaaacgt      4380
     ttcttctgga gtgactctag tgcagctctg agctggatta atgcggatcc tcgaaagtac      4440
     ggtccttatg tctcatttcg agtggcagaa atactggaaa ctacagatcg atccgaatgg      4500
     cgctgggttg cttcaggaga caatccagcg gatgaggcta caaaatgggg tgctgggcca      4560
     tactttaaaa cgaacagcat ctggtacaac ggtcctggat ttttatatct gcctgagcaa      4620
     gactggacga gagatgcacc cgatgcagcg ggacatgaag aactacgagc gtgctatctc      4680
     catcgggaat tacctattcc acaaaacatt ttggatatca gcaggttttc caaatggacg      4740
     cgtctgcaac gtgcaatgtc ctatgtccac aggtttatca acaactgtcg ttacaaaaaa      4800
     cgttacaccg gtccgttgca gaaatccgaa ctgcagaaag ccgaaacttc gattttccgg      4860
     ttggtccaat ggcaatcctt tccagatgaa atggtaacgt tgatgactaa tcgtcttcta      4920
     ccaccacgtg aacaacgttt cttggaaaag tcaagcgtca tcttcaagat gaccccaata      4980
     ctcgacgaac agcaaatact ccgtgtggat ggaagaattg cagcggtgga acgcgcaatc      5040
     gccgatgtca aacacccgat aattctaccg agaaaacacc atgtgacaag tttgttaatt      5100
     gagcacctac atcgtcaact tcagcacggt aacaaagaga ccctggttaa cgaaattcgg      5160
     cagcggttct gcataccgaa gttgcggact ttagtaagtt ccatcgttta ccgatgtttt      5220
     atctgcaaga ttcgaagagc tcggccgatc gtccctcaaa tggcctcgtt accacaagct      5280
     agactgtcac catttgtccg tccatttagc tacgttgggc ttgattactt tggaccacta      5340
     ttggtaaagg tagggcgtag tcattctaaa aggtggattg cgctttttac ctgcatgaca      5400
     gtgcgagccg tccaccttga agtggcacac aatatgtcga ccgagtcatg tattgcatgc      5460
     gtccgtcgct ttttatgccg ccgaggtttc ccggtagaaa tccatagcga caacggcacc      5520
     aattttcaag gcgcagaacg attgttgcga gagcaaatca acagtggttt ggcggagact      5580
     ttcactagca caacaacggc ctggcacttc attcctccag ccaccccgca catgggcggt      5640
     gcgtgggaga ggctggtccg atcggtaaaa acggcgttga ctgcggcgta caacaacgat      5700
     aagctggatg acgaagccct acagacaatg atcgctgaag cagagtcgat cgttaacagt      5760
     aggccgttga catatctccc cttggattcc gctgaacaag aagcgataac gcccaaccat      5820
     ttcttattgg ggagttcgca aggagttaag cagccggctg tgcagggtgg acatgatcca      5880
     gcgatcttga aacgctcttg gactgcgatc caagtttacc tcgacgcatt ctggagacgc      5940
     tgggttcgag aatacatgcc aacgttgacg aaaaggacca aatggttcgg acctactaga      6000
     aacgtgcaag caggagattt ggtcatcata atcgatgagt caagaagaaa tggttggatt      6060
     cgcggccgtg tattggaacc aataactgcg gctgatggca aagttcgtca ggcggttgtt      6120
     caatcttcca aagggattca aagacgagca gtagctaaaa tggctgtcct tgaagtggcc      6180
     aaagcagatg gaaccgagga agaaagtggg ttccaccggg gggagga                    6227
//
ID   BEL-669_AA-LTR repbase;    DNA;    INV; 543 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-669_AA-I;
KW   BEL-669_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-543
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-543
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 71-71 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 543 BP; 167 A; 97 C; 104 G; 174 T; 1 other;
     tgttgccaca wctgcggacg atttggcatc ccggccacat acaccaaata cgtagaacat        60
     catcatgcgt tatcgttgca tcgtattgtg cgaattgtca gatgaggtga agtaggtacc       120
     tatcttatga cagagtgact ggcaaatttg tgcaaggtag atgaaaccac aatattagat       180
     cgcaataatc ctattgagtt cgtttgattt aagtttaggc taaatcaggg cgaaatagtt       240
     attagcagta tttccttatg aaactattcc tcatcgtaaa agcttgaaga aggtaaaaaa       300
     tagttacacg tttagagaca ttatgataat attgattact tacgattccc taggtcttga       360
     attgaattta tacagaacgg aatcgaagtc ggtaccaaat agttgtccca ctgaattgta       420
     agttcaatat aataatcgtt tcgttagttt actaacttcc tattgaattt tagctttgaa       480
     gcactcaata aacggctttg aaaatcagtg ttcccggctt ctcatttggt cctgttctca       540
     aca                                                                     543
//
ID   BEL-66_AA-I repbase;    DNA;    INV; 6845 BP.
XX
AC   supercont1.276;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_AA_;
KW   BEL-66_AA-LTR; BEL-66_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6845
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.276; Positions  206386  199542.
XX
CC   'ATATT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..3678
FT                 /product="BEL-66_AA-I_1p"
FT                 /translation="MPRSTRSAPGSISHCMACTGPETMRMVSCCQCKTWWH
FT                 FECVNVDESIAAPDRPFICPNCQKPSPTIPSLKPTSEVSGRKAISLSGVSS
FT                 TSSVRAKRARLLLEKLEAHKALMEKRLEHARREQMIRHEQEKQMQEAEIEQ
FT                 ARLRMEQTIIEETFRVREEELLNEESDGQSVSSEQSSISKVRQWQKEQPYS
FT                 ARSSTMMETAPDANGMIHTQVALTIGEEGNVVEGELEGRLQSIKQTYIEPV
FT                 LGGFIDRTASTLGTNVGENSVANLNIPSTSQHIVMSRFSDKQSQIAARNTI
FT                 QIPSSVSFEPQGRSSLVEPKLPANPSILVPHPFGRSEPGMSSSNVNFSDQV
FT                 NRVPVDSEVHQQRSSAANSSAPSVRAPLPRPRRMELETTCPRQRTSFDDPL
FT                 RSEPPPSVQGVPPERAIPEVHRRLPYSLPDENHWNQAWGPTPQQLASRHVM
FT                 SKELPFFSGNPEDWPLFISSYNNTTQACGYSEAENLARLQRCLKGHALEAV
FT                 RSRLLFPQAVPQVIETLETLYGRPELLIHSLLQKVRAVPAPKHDRLDTLIG
FT                 FGMAVRNLCDHLEAGGQEAHLNNPMLLFEMVEKLPANMKLDWSLYKQRCGE
FT                 VNLHEFAQYMSTLVRAATDVTLHYGPRPTPQPRDSRPEKGSKDKNFCGAHS
FT                 VEDSKTSKKTDESMNTSTPSCLICKDPKHRVKECNGFTRKSVDERWKVIQN
FT                 LGLCRNCLGAHGRRPCKVNKRCEVEGCQLKHHPLLHSKREKQEVKQGNTEQ
FT                 LQGSNAVTNHHYAGKSTLFRIVPVTLFGNNRAVSVYAFLDDGSERTLIEEK
FT                 IADELGIEGEHLPLCLQWTANVKRKENNSQRIALQISGANGSKHTLSDVRT
FT                 VSRLDLPRQSLPYSKLAKLFPHLQGLPVHDYDQAMPCIFIGNDNAHITATL
FT                 KLRGGQPGDPIAAKTRLGWTIYGKNSENQGNLAHTFHICECRDEQSLHELV
FT                 VQFFSIESLGISTTMVLEPEEVQHANRILCETTKRVGTRFETGLLWKFDHW
FT                 EFPDSYPMAVKRLQGLERRIQSDPVIGGSIKRQIAEYIVKGYIHKASEQEL
FT                 NEADPRRVWYLPLGVALNPKKPSKVRIFCDAAAKVDGISLNSLLLKGPDLL
FT                 NNMFEVLFGFREKRIAVCADLKEMFHQIQIRKEDRHAQRLLWRDDPTKSPE
FT                 VYLMDVTTFGATCSPCSAQFVKNLNATEHAKEYPVAAVAIQRKHYVHSTNE
FT                 TCKIIASRM"
FT   CDS           4261..6606
FT                 /product="BEL-66_AA-I_2p"
FT                 /translation="MKIAEEVRHVHSRGGFHLRNWLSNSKEVLLRVGENDP
FT                 VSEKNIKLDKGSATEHVLGLFWRPDKDDFTFSTNSARHVEQPTKRQALSVV
FT                 MSTFDPLGFLAFFLIHGKILIQELWRAKIQWDQLLPEKLSEQWTRWIAYFQ
FT                 CLDQISIPRCYFPRHSVKDILSLQLQIFVDASEEALACVAYLRAEFSNGIE
FT                 IALVAGKSKVAPLKALSILRLELMAAVIGARLRQTIIERHSLQIDRTYLWS
FT                 DSRTVLAWINSDHRNYRQFVACRVGEILSKTHANQWRWIPSKENVADDATK
FT                 WGRGLCVSPSSRWFRGPDFLYLTEDHWPVNTQFEVSQTNEELRACLIHQEA
FT                 MVEHQVNWKRFSQWSRLWRAIAYVYRFVQNLRRKANNTLLLLGPLTQAELA
FT                 KAETTIWRWVQGEVFPDEVAILSKMRAKHTESLGKLERTSTIRKLSPFMDE
FT                 NGVVCMDSRISAATFASFDTRFPIILPKDHTVTELVIGWYHRKFLHGNGET
FT                 VVNEVRQRFHVPNLRTVIRKEKKKCAWCKLKQAAPAVPRMAPLPAARLTAF
FT                 ERPFPYVRVDYFGPIAVRVNLGNCKRWVALFTCLTVRAVHLEIVHSLTTES
FT                 CKMAFRRFIARRGAPVEIYSDRGTNFVGSSNELQREMCVIEQQLVETFTNT
FT                 NTRWIFNPPAAPHMGGAWERLVRSVKTALAAMYTTRIPNEETLETLVAEAE
FT                 GVVNSRPLTFIPLEKEQQEALTPNHFLLLNSNGVVQTPRTFANSTEVSRSQ
FT                 WNLCRVMVDRFWQRWVREYMPELARRTKWYE"
XX
SQ   Sequence 6845 BP; 1934 A; 1532 C; 1780 G; 1599 T; 0 other;
     aaatctaaaa gatatttcac tatgccaagg agtactcgca gtgcaccagg aagtatatcg        60
     cactgcatgg catgtaccgg gccggaaacg atgaggatgg tgtcttgctg tcaatgcaaa       120
     acatggtggc attttgagtg cgtgaatgtg gacgaaagca ttgctgcacc tgaccgtccg       180
     ttcatttgtc ctaattgcca gaagccttcg ccgactatcc cgtctttgaa accgacatcc       240
     gaggtgagcg gcaggaaagc tatcagttta tctggagttt cgtccacctc tagcgtaaga       300
     gctaagaggg ctcgcctact gctggaaaaa ctcgaggcac ataaagctct gatggaaaaa       360
     cgtttggagc atgcacgtcg agaacagatg attaggcatg agcaggagaa acagatgcag       420
     gaagctgaga tcgagcaggc acgcttgcgg atggagcaaa ccatcattga agaaaccttt       480
     cgagtcaggg aagaggaact cttgaatgag gaaagtgacg gacagagcgt ttcatctgag       540
     caaagtagta tcagcaaggt gagacagtgg cagaaggagc aaccttactc tgcacggagt       600
     tcaacgatga tggaaactgc gccggacgcc aacggaatga tccatacaca agtggctcta       660
     accattggtg aagaaggtaa cgttgtagaa ggcgagctag aaggtaggtt acagtccata       720
     aaacagacct acattgaacc agtgctagga ggcttcattg ataggacagc tagtacgtta       780
     ggcacgaatg taggagaaaa tagcgttgct aaccttaata ttccgagtac aagtcagcat       840
     attgtcatgt cacgtttctc tgataagcaa tctcaaatcg cggcacgtaa taccattcaa       900
     atcccaagta gtgtgtcttt cgaaccacaa ggtcgttcat cgctggtaga gccaaaattg       960
     cccgcgaatc cgtcaatcct cgtaccccat cctttcggtc gaagtgaacc gggcatgtca      1020
     agtagtaacg taaactttag tgatcaagtg aaccgagttc cggtggatag cgaagtgcat      1080
     caacagcgtt ctagtgctgc gaactcatca gcacctagtg tcagagctcc gttaccgcgt      1140
     ccacggagaa tggaactgga gactacgtgc ccacgccaaa gaacgagttt tgatgatccg      1200
     ttgcggtctg agccaccacc ttcagtacaa ggagtgcctc cagaacgtgc gattccagaa      1260
     gtgcatcgaa ggctgcccta ctcgttaccc gacgaaaatc attggaatca ggcttgggga      1320
     cccacgccac agcagctagc atcgagacat gtgatgtcta aagaactgcc cttcttttcc      1380
     ggcaacccgg aggactggcc actctttatt agttcataca acaacacgac tcaagcgtgc      1440
     ggatattcgg aggcggagaa tcttgccaga ttacagcggt gtctaaaggg gcacgcgctg      1500
     gaggctgtac ggagccgtct attatttccg caagcagtgc cacaagtgat cgaaacactg      1560
     gaaactttgt atggtagacc ggaactgttg atccattccc tactgcagaa ggtgcgagca      1620
     gttccggcgc caaagcacga tagattggac acgttgattg gtttcggaat ggcagtgagg      1680
     aacctctgtg accatttaga agccggaggt caagaagctc atttgaataa tccaatgctt      1740
     ctcttcgaga tggtggagaa actgcccgca aacatgaagc tggactggtc gctatacaaa      1800
     cagcgatgcg gtgaggtgaa tcttcatgag tttgcacaat atatgtcaac cctggtacgt      1860
     gcagctacgg acgtgacttt acattacggt cctcgcccga cgccgcaacc acgagactct      1920
     agaccggaga aaggtagcaa ggataaaaac ttctgtggag ctcattcggt ggaagattcg      1980
     aagacgtcaa aaaagacaga cgagagcatg aatacgtcta ctccatcgtg cctcatctgc      2040
     aaagacccaa agcatcgtgt gaaagagtgt aatgggttca ccagaaagag tgtggatgaa      2100
     cgctggaagg ttatccaaaa tttaggattg tgccgtaact gtctaggcgc gcatggaaga      2160
     cgaccttgca aggtcaacaa gcggtgcgaa gtagaggggt gccagttaaa acatcatcca      2220
     ctactgcatt ccaagcggga gaaacaggaa gttaagcaag ggaatacgga acagctacaa      2280
     ggctccaatg ctgtcaccaa tcatcactac gcagggaaat caaccctttt ccgcatcgtt      2340
     ccagtgacgc tgtttgggaa caaccgtgca gtttcagtgt atgcgttttt agacgatgga      2400
     tcggagcgaa ctctgatcga ggaaaagatt gccgacgagc tgggaattga aggtgaacat      2460
     cttcccttgt gtttgcaatg gactgcgaac gtgaagagga aggaaaacaa ctcgcaaaga      2520
     atcgctctgc aaatctccgg tgcaaacgga tcgaagcata cgctgtcaga tgtccggaca      2580
     gttagtagat tagacctacc acggcaatct ttgccctact caaagctggc gaagctattc      2640
     ccgcatctgc agggactacc agttcatgat tacgatcaag caatgccttg catctttatt      2700
     gggaacgata atgctcacat cacagctact ctaaagttac ggggaggaca acctggagat      2760
     cccatcgcag cgaagacccg gttagggtgg accatatatg gaaagaattc ggaaaaccag      2820
     ggaaatctag cgcacacctt tcacatctgt gaatgccgcg acgaacaatc actccatgag      2880
     ttggtagtac agttctttag catagaaagt ctgggaatat ctaccacgat ggttcttgaa      2940
     ccagaagaag tacagcatgc gaatagaatc ctttgcgaga ctactaagag agttgggacg      3000
     agattcgaaa ccggacttct ttggaagttc gatcattggg aatttccgga cagttacccg      3060
     atggctgtta agcgattgca gggcttagag cgccgaatcc aaagtgatcc tgtgataggt      3120
     ggaagcatca aacggcagat agcggagtac atagtgaagg gatatatcca taaagcatcg      3180
     gaacaggagc tcaacgaggc agatccacgg cgcgtttggt atttaccctt gggtgtcgca      3240
     ctgaatccca aaaagccttc caaagtacgc atattttgcg acgctgcagc caaggtagat      3300
     ggtatttcgt tgaacagtct gcttctgaaa ggtccggacc tactcaacaa tatgtttgaa      3360
     gttctcttcg gttttcgcga aaaacggatt gcagtttgtg ccgacctgaa ggagatgttt      3420
     catcagatcc agatacgaaa ggaggatcga catgctcaac gactactctg gcgcgatgac      3480
     ccaacgaaga gcccggaagt ctacctaatg gacgttacca cgttcggggc cacctgttca      3540
     ccgtgctcag cacaattcgt caagaaccta aacgccaccg agcatgcgaa agagtatcca      3600
     gttgctgctg tcgccattca acggaagcat tatgtacaca gtacgaacga aacctgtaaa      3660
     attatagcga gtcgaatgta acaaaaggac tccatcatat atgatagata tttatgtgcg      3720
     atcttaaaat tacattattg ctggtttgaa aatgaactat aattagctac caaactagat      3780
     gaatatataa aaaagttcta atcgagattc aaactcgcga cctttggagc gacagctgca      3840
     tgcccgagct ctctcggctg tctcaccacc ttagtgagtg gctgacgaaa tttgaacacg      3900
     ttctgcgtaa aattagtgta tcacagaatc acttcgacgg ttggcggatt catcgagaag      3960
     tggttgaaag agcagtcaac aatgcggagc gttctctcgg tcgcgtgatt gttgagcgtg      4020
     gctgggtttg ttttgtggca gattcatgta aatttctaac ggatttaact gaaatatatt      4080
     tggaagggcc ctgagtggtt tacaggtggt catatttgct tcagctgttg gctaacgctt      4140
     gtaattttca aatgcctgcc acaattttcc gtcgatgttc aaattgcgtg ctgcttaata      4200
     ttcacaaatt tttgctgtgt agatgactat gtggatagcg cggatagtgt cgaagaagcg      4260
     atgaaaattg cagaagaggt gcggcacgtg cattcacgag gtggtttcca tttacgtaac      4320
     tggttgtcga attccaaaga agttctctta cgggtcgggg aaaacgaccc agtctccgag      4380
     aaaaacatca aattggacaa aggaagcgca acggaacacg ttcttggact gttttggaga      4440
     cccgataaag atgatttcac gttttccaca aattcggcca gacacgtgga gcaaccgacc      4500
     aagcgtcaag ccttgagcgt ggtgatgagc acttttgacc cattgggctt cctggcattc      4560
     tttctgatcc atggcaaaat ccttattcaa gagctctggc gagcaaagat ccagtgggac      4620
     cagttgttac cggaaaaact gtccgaacaa tggacacggt ggattgcgta tttccaatgc      4680
     ctggaccaga tcagtattcc gcgctgctat tttccacgtc attcggtcaa agacattctg      4740
     tcactacaac tgcaaatttt cgtagatgca agcgaagagg cgcttgcttg cgttgcatac      4800
     ctgcgggccg aattttcgaa tgggattgaa atagcacttg ttgccggaaa atcgaaggtg      4860
     gctcctttaa aagctttgtc catactgaga ctagaactta tggcagcggt gatcggggcc      4920
     cgtttgcgac agaccataat cgaaagacac tcgttacaga ttgatcgaac ttacctttgg      4980
     agtgattcta gaacggtgct cgcctggatc aactctgacc atcgtaacta ccgacaattc      5040
     gtcgcatgtc gtgtaggaga gatactttcc aaaacgcatg ccaatcaatg gcgctggata      5100
     ccatccaagg aaaatgtagc ggatgatgcc acaaaatggg gaagaggact ctgtgtgtca      5160
     ccgagtagcc gatggtttag aggtccggac ttcctatacc taacggaaga ccactggcct      5220
     gtgaataccc aattcgaagt ctcgcagacg aatgaggaac ttagggcttg cttgatacac      5280
     caggaagcga tggttgagca ccaagtaaat tggaaacgat tttcgcaatg gtctcgtttg      5340
     tggcgagcaa tagcatatgt atatcggttt gtgcagaact tgagacgaaa ggcgaacaat      5400
     acgttgctgc tgcttggacc gttaacccaa gcagaactag ccaaagcgga gacaactatc      5460
     tggcgctggg tgcaaggtga ggtgtttccg gacgaggtag ctatactttc taaaatgcgt      5520
     gccaagcata cagagagtct tgggaaattg gagcgaacta gcactattcg taagctgtcg      5580
     cctttcatgg acgaaaacgg tgtagtatgc atggacagtc gaatatccgc agccacgttc      5640
     gcctcatttg acacccgctt tccaatcatc ttgccaaagg atcatactgt aactgagctg      5700
     gttattgggt ggtaccatcg gaagtttctt catgggaacg gcgaaaccgt tgtaaatgaa      5760
     gtaagacagc gattccacgt gcctaatcta agaacggtaa ttcgcaagga gaagaagaaa      5820
     tgtgcatggt gcaagttgaa acaagcagcg ccagcggttc cgcgaatggc gcctcttcca      5880
     gcagctagat tgacggcgtt cgaacgacct tttccgtacg tgagagttga ttacttcgga      5940
     ccgatagctg tgcgtgttaa tctagggaat tgcaaaagat gggtagcgtt gttcacgtgc      6000
     ctaaccgtcc gagctgttca tctagagatc gtacattcgc tcactacgga gtcctgcaaa      6060
     atggctttcc gcaggtttat agcacgcaga ggagctcccg tagaaatcta tagcgaccgg      6120
     ggaaccaact ttgtcggatc tagtaacgag ctgcagcgag agatgtgcgt aattgaacaa      6180
     cagctcgtcg agaccttcac taatacaaac accaggtgga tattcaatcc gcccgccgct      6240
     cctcacatgg gcggcgcgtg ggaacgtcta gtaagatcag ttaagacagc acttgcggcc      6300
     atgtatacta ctagaattcc caatgaagaa acgctggaaa cgctggtggc cgaagcagaa      6360
     ggagttgtta actcgaggcc tttaacattc atcccgctag aaaaggagca acaggaggcg      6420
     ttaacaccca accatttcct tttgctgaac tccaacggtg tagtccagac tccaaggaca      6480
     tttgcgaatt ctaccgaagt cagtaggagc caatggaacc tctgtcgcgt catggtggac      6540
     agattttggc agagatgggt gcgagaatac atgccagaat tagcccgccg tactaagtgg      6600
     tacgaatagg tgacccctat ccaaacgggc gacttagtaa ttattgtaga ggacaacgtg      6660
     cgtaacggat ggattcgagg acgggtcaca gaagtgatca acggaagaga tggtcgtatt      6720
     cgtcaggcgg tggtgcagac agctacggga ttgatgcgac gtcctgttgc taagctggct      6780
     aagttggatc tacaggaaag taaggttgac tcgggcaagc cggatcaact tacgggtcgg      6840
     ggaga                                                                  6845
//
ID   BEL-66_AA-LTR repbase;    DNA;    INV; 596 BP.
XX
AC   supercont1.276;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_AA_;
KW   BEL-66_AA-I; BEL-66_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-596
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.276; Positions  199541  198946.
XX
SQ   Sequence 596 BP; 210 A; 103 C; 112 G; 171 T; 0 other;
     tgttacgggg aatattgcca tcgctttgaa tacccctcga tccaacataa acgcggcgcg        60
     ctagattcct cagctgtcat cacatctgcg aatgacactg caaagcgtgt gacctaaatg       120
     tctaatggtt tagtttggat aagattgata tctcagacag agcaagagag tgataaaaga       180
     ttaatttgca atttagattg attgagcgtt tacgaaatta ttgtaagtag tatgttgaaa       240
     aatatgaaat atctgaacta aactccgaat ttaatacaga tttgataaac cctagtgcag       300
     ggttgtatga ttgagcaaat attggaactt ggataaccta taaaaggatg taattgcaat       360
     tctgtaaaaa tttgtaaagc taaaaggttg aatttcaggg caaacccaat ttgtaagatt       420
     acaaactaga ttatttgttg gccacaaaag ggactgcgga cgaaatatgt aagttcccct       480
     tagaaatgta cactcaaaac ccaaaattct aataaaattg atttagcttt tagcgcattt       540
     atcaccaaac tatccggtgt agctgctcaa aagatcccga ataccctaaa ccaaca           596
//
ID   BEL-66_CQ-I repbase;    DNA;    INV; 6791 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_CQ_;
KW   BEL-66_CQ-LTR; BEL-66_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6791
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 285-285 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5956-6537] - Integrase core
CC   'GAATG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           227..1849
FT                 /product="BEL-66_CQ-I_1p"
FT                 /translation="MAAEKKAAILSLQRTMKALHTRAGKLLIYVQSFDVDK
FT                 EDSLQLETRRDAVFEMRQTFLEIEQKLFGLSKEEELDGISMQSEEFFDLVT
FT                 EILYQIARKLKPLSNPPEAKPSLDSRIATVPSSAPTIRLPEISLPKFNGHY
FT                 DQWIYFRNQFNHLVRRNEALNDHQRLHYLRSCLVGEAENFESSEESFSSLW
FT                 KALEQEFENRRWPVDNHLAELFQIKRLEFESANDLHQLLNVVQRNLRGLSS
FT                 LKLNLEPLSEAMLVHVVASRLDGDTHKAFESHVVGQSSVKWSEMVDFLLNR
FT                 CRILENLEQERKQTRVHPKPVGARLQPKVLVSATRDEEKRNFGCFNCTGSH
FT                 YINECRSFLALPVKQRFQRVKDLKLCINCFSNRHIVANCKSGTCKSCGQRH
FT                 NTLLHFDPKMPGEGTSSQSSASSVRPRAIQNKPEQDRDRVGLCALTSPDAA
FT                 REQPAPGPEARLVDPALDSKKTSGPVASEDRSVEPKSPSKKVQLISTSGQA
FT                 LLHTAIVYVQGSNGEVQECRAVLDSCAMTSFMTTACASPVTFWPA"
FT   CDS           join(1936..4413,5278..6789)
FT                 /product="BEL-66_CQ-I_2p"
FT                 /translation="ISSWVSTLAKNLSQLKTFPASVSIVGFGGAGHGITEA
FT                 AVAHVFSKPSVIEHQEVVVEFLVAPCIVNRLPLRSFDISSWIIPEWIDLAD
FT                 PHFNXPEKIDILFGIVEWDKMMLSQTHKLGDELPTLRRTIFGWVAGGPVNE
FT                 EVNYPTLQALPVTNEQLDEQLTKFWEVESYSTERFLSPEEQAAEDHFVTTH
FT                 CRDEKGRYVVALPFKEEEVKLGDSAHIAHRRFLMLEAKLIKDRKLYDDYRK
FT                 FMQEYIDLGHMERVGTFSLAEPQELPYYFLPHHAVVRPESSTTKLRVVFDA
FT                 SAKSSNGQSLNDQLLVGPTLQPRLIDNLLSFRTYKVAVTSDVAKMFRQIDV
FT                 RKEDRRFQQILWRTSPDEDIGVYQLTTVTYGTACAPFLATRALLQTCTDEA
FT                 EHFPLAAVFGKNSVYMDDVLFGAETVEEALEMQRQLTGMLGKAGFELXKWC
FT                 SNRSELLAGIPEDKLEQKVLFTEEGKTKTLGITWQPDLDVFSFDIHSIAFS
FT                 EGPPTKRKVLSDISKFFDPCGLAAPVVMTXKIYMQDLWRGKXKWDVALKED
FT                 LAKLWIEYRDELSEMKTIRISRCVLPLRRTVFVELIGFSDASQKGYGANLY
FT                 VRSVNHEGQTAIRLLCAKSHVAPLKEKRALIPRLEICGCVKLAQLVDKVKR
FT                 SLPIEFDRITCYTDSMIALSWINTCPSKLEPFIANRVARILRLTSKIDWFH
FT                 CRTEDNPADLLSRGIMPGKLATCGKWWKGPPFMIDHKRPTSVQLIPEDQLP
FT                 GLLVVCAVETVERFSLFDNCEKYFTMVRAVARIQRWHQNACKRSPENRRHG
FT                 RLFSPEEMRRATPRAWVNNKGNALWFYLRYFLPLAPHQHNHHRATKGTFWS
FT                 LLFAQVIPKFVFPCYFPCSGLALVRLAQEEAFPEVFAQLRKKVTLQNHSLI
FT                 PLSPFTDDRDVLRVGGRLSKSSCSYDTKHQMILPQKHPLTVAIIRDKHTQN
FT                 MHAGIELTLAASRREFWIIRGRVAVKDVIGKCVVCFEDNPRPVRQYMGDLP
FT                 ACRLERRYPFHQVGIDLCGPVFIKQRNKRSTVQHKAWIVLFVCLSTKAIHL
FT                 ELVSELSTAAFLAAFDRFVSRRGXPAVVWTDNGTNFVGAANLLAEWDKFFA
FT                 SVDTQDEIQRAHSNEITWRFNPPEAPHFGGIWESNIKQAKKLLVKHTAGAA
FT                 LCFEEMSTVLARIEAILNSRPITPLSNDPEDFEPLTPGHFLVFRPLNAVAR
FT                 PEVDRTKHARSRYEHITKIVQHFWDRWHFEYLTXLQQRYKWHHKIVVEVGQ
FT                 LVLIKRDNMPVQKWLLGRVVELFPGVDGVTRVVKVKTKDGILKRAVAKLCF
FT                 LPIDPENGVESAAFQRRE"
XX
SQ   Sequence 6791 BP; 1711 A; 1774 C; 1709 G; 1588 T; 9 other;
     ttaggtcctt cgagccggat cgaagcggat tgcattgtcg gagaaagtgt tcgaaagggg        60
     acctcgaacc tcaaggtaag gtagtgatcg attgagctag agcaagcgcg tgcgtaaata       120
     gaatcttggc ctttttgtgc gaagcttttg ttctcggtgg cttccgtttc cgccatcttt       180
     gatccacatt tgtcttgtgt gctcccatcc acagacaaac tttgcgatgg cggcggagaa       240
     aaaggccgcc attttgtccc tgcaaaggac gatgaaggca cttcacacac gtgctggaaa       300
     acttttgatc tacgtacaaa gctttgatgt cgacaaagag gattccctcc agctcgaaac       360
     tcgcagagat gctgttttcg aaatgcgcca aacctttttg gaaattgaac agaagctctt       420
     cggtctctcg aaggaagaag agttggatgg gatttcgatg cagagtgaag agttttttga       480
     tctcgttact gaaattctct accagatcgc cagaaaactg aaaccccttt cgaacccccc       540
     agaagcaaag ccctccctcg acagtagaat tgccaccgtt ccaagttccg ctccgaccat       600
     taggcttccc gagatctcgt tgcccaagtt caacggccat tacgaccagt ggatttactt       660
     ccgcaaccag ttcaaccatc ttgttcggcg caacgaggcc ctcaacgatc atcagcgtct       720
     ccactatttg cgctcttgcc ttgtcgggga agctgagaac ttcgagtcgt cggaagagtc       780
     gttctcgtcg ttgtggaaag ccctcgaaca ggagttcgag aaccggcgct ggccggtaga       840
     caaccatctt gcggaactgt tccagatcaa gcggttggag ttcgagtcgg cgaacgatct       900
     gcatcagctg ctgaacgtcg tccaaaggaa ccttcgtggc ttgtcctctt tgaagcttaa       960
     cctcgaaccc ctttccgaag caatgctagt ccacgttgtc gcttcccgtc tcgatggtga      1020
     cacgcacaag gctttcgagt cccacgtggt cggccagagt tctgtsaagt ggagtgaaat      1080
     ggtcgacttc ctgttgaatc gctgtcgcat tttggagaac ctggagcaag aacgcaagca      1140
     aacccgtgtc cacccgaagc cagtcggagc caggctgcaa ccgaaggtgt tggtgagcgc      1200
     cacccgtgat gaggagaaga ggaatttcgg ttgtttcaac tgcacaggta gccattacat      1260
     caacgagtgt cgcagcttcc tcgctctgcc tgtgaagcag cggttccaga gggtcaagga      1320
     tttgaaattg tgcatcaact gcttctccaa tcgccacatt gtcgccaatt gcaagagtgg      1380
     tacctgcaag tcttgtggcc aacgtcacaa cacgcttctc catttcgacc ccaagatgcc      1440
     aggtgaagga acgtcgtcgc agtctagtgc atcgtcggtt cgccctagag caatccagaa      1500
     caagcccgag caagatcggg atcgcgtcgg tctgtgtgct ctgacttctc cagacgctgc      1560
     tcgtgaacaa cccgcgcccg gaccagaggc gcgccttgtc gaccccgctc tagattcgaa      1620
     gaagacgtcc ggaccagtgg cgtcagagga tcgatcagtt gaaccaaagt cgccctccaa      1680
     gaaggttcag ttgatctcga cgagcggaca agcactgctg cacactgcga tcgtgtacgt      1740
     tcaaggatca aacggggaag tccaagagtg tcgtgcggtc ctggactcgt gtgcaatgac      1800
     ttcgttcatg acgactgcgt gtgcttcacc agtaactttt tggcctgctt gatgttcgat      1860
     tcccagatcc cgccaaagtg tggggcctcc ggggggttga atctccaggt gatctcgttg      1920
     ctgtgggcgc gttgaatctc gtcttgggta tcgacactcg cgaaaaactt gtcccaactc      1980
     aaaacgttcc ctgctagtgt ctcgattgtc ggattcggtg gagcaggcca tggaatcacc      2040
     gaagcagctg tcgctcacgt tttctcgaaa ccgtctgtga tcgaacacca agaagtcgtt      2100
     gttgagtttc tcgtcgctcc gtgcatcgtt aaccggttgc ctttgcgctc gttcgacatc      2160
     tcaagctgga tcataccgga gtggattgac ctcgcagacc cccacttcaa ccawccggag      2220
     aagatcgaca tcctgtttgg catcgtcgag tgggataaga tgatgttgag ccagacccat      2280
     aagctcggcg acgagttgcc tacgctgcga cgaacaatct tcggatgggt cgcaggaggw      2340
     ccggtgaacg aggaggtcaa ctatcctaca ctgcaagctc tgccggtaac gaacgaacag      2400
     ctggacgaac aactgaccaa gttctgggaa gtcgaaagct acagcacgga acgcttcctt      2460
     tcccccgaag aacaagctgc tgaggatcac tttgtgacca cccactgtcg agatgaaaaa      2520
     ggtcgttacg tcgtcgcctt gccgttcaag gaggaggagg tcaagctcgg agactcggca      2580
     cacattgctc accgtcgttt tttgatgctg gaagcgaagc tgatcaagga ccggaagctg      2640
     tacgacgact acaggaagtt catgcaggag tacatcgacc tggggcacat ggaaagagtt      2700
     ggcactttct ctctcgctga accacaagaa ctgccctact actttttgcc gcatcacgcc      2760
     gtcgtccgac ccgaaagcag taccaccaaa ctacgggttg tttttgatgc ctcggcgaaa      2820
     tccagcaacg gacagtccct gaacgaccaa ctcttggtag gaccgaccct ccaaccccgc      2880
     ctgatcgaca atctgctcag ttttcgaacg tacaaagtcg cagtcacctc ggacgtcgca      2940
     aaaatgttcc ggcaaatcga tgtccggaaa gaagatcgtc gattccagca gatcctgtgg      3000
     cgaaccagtc ccgacgaaga catcggcgtc tatcaactga cgacagtcac ctatggcacc      3060
     gcttgcgctc cctttttggc aacccgggca ctgctgcaaa cctgtaccga cgaagctgag      3120
     catttccccc tcgcagcggt cttcggcaag aactcggtgt acatggacga cgtgcttttt      3180
     ggagccgaga cagtcgaaga agccctcgaa atgcagcggc agttgaccgg aatgctcgga      3240
     aaggcgggat tcgagttgca maagtggtgt tctaaccgca gcgaactatt ggccggcata      3300
     ccagaggaca aactggagca gaaagtgcta ttcaccgaag aaggcaaaac caagaccctc      3360
     gggatwacct ggcaacccga tctcgacgtc ttcagtttcg acatccactc gattgcgttt      3420
     tcggaaggac ctccaactaa gcgcaaagtt ctctcggaca tctccaagtt cttcgatccg      3480
     tgtggactag cagctccagt ggtcatgacg gscaaaatct acatgcaaga cctgtggcga      3540
     ggaaagaaka agtgggacgt agcactcaag gaagatctgg ccaagctgtg gatcgagtac      3600
     agggacgagt tgtcggagat gaaaaccatc aggatcagtc gctgtgtgct tccccttcgt      3660
     agaacggtct ttgtcgagtt gattgggttc agcgatgcgt cgcaaaaggg ctatggggca      3720
     aatttgtacg tacgatcagt aaaccacgaa ggtcaaaccg caattcgttt gttgtgcgcc      3780
     aagtcgcacg tcgcaccgct taaagaaaaa agagccttga ttccgcgctt agaaatttgt      3840
     ggatgtgtga agctcgctca actagtcgac aaagtaaaac gatcactacc aatcgaattc      3900
     gaccgcataa cttgctacac ggattccatg atcgccttga gttggatcaa cacctgtcca      3960
     agcaaacttg aaccgttcat cgccaaccga gttgctcgga ttttgcgatt gaccagcaag      4020
     atcgactggt tccactgccg gaccgaggac aatccggcgg atctgctctc gcgtgggatc      4080
     atgcctggaa aactagcaac gtgcggaaag tggtggaagg gtccgccatt catgatcgac      4140
     cacaagagac caaccagtgt gcagctcatc cctgaagatc aacttccggg actactcgtc      4200
     gtctgcgccg tggaaacggt ggagagattt tcgctgttcg acaactgcga gaagtacttc      4260
     accatggttc gagccgtcgc acggatccag cgctggcacc agaacgcgtg caagcggagt      4320
     ccagagaatc gtcgccacgg tcgtctgttc agcccggagg agatgcgtcg agccacgccc      4380
     cgagcatggg taaataacaa gggaaatgcg ttataatacc tttctatggt atcaatacca      4440
     aattttggta ttcctggacc ctttaaaaat tgtcttaagg attatgcaag agcgaaatgt      4500
     gctatcatac caattaaagg tattgttttg atattgcaaa attgcagaat ttgtcaatgg      4560
     tcgaacacca cattttggta ttcttttggt attacagtgt tttatcaaat tcctctgaaa      4620
     ctatgggaaa attttgacaa agtaattaat tttgcgctaa aatgatgtct caaagcgaat      4680
     gctttcattg aaaaccggaa atttcaaact tgatttcaaa catttaagaa atgacttgac      4740
     attgtggaaa attttctaag tcaggatgcc actttgtccg aagctaaaaa acgtcgattt      4800
     ctctaatttg ggataaccga atacttgaaa aacgagtagc gacatttgct gttttaattt      4860
     aagttttctt taaactattt ttttcagtgt tttttttaga tttcaagaac ttcaagcaca      4920
     ggccgttcat caatgacaaa tgcattcaat gtggtgaaga atatcactaa gaacaacatg      4980
     gaatcatcag gtgagaagat ttggctgttg catatggatc atttccgttc tttcactaac      5040
     tgcaactgtt gcactaaaaa tggtatgaaa atactagatt tggtattctt gacaaatacc      5100
     agcgaccaaa atgtgctctt ggttgcccag taatagatgg taaaatacca tgaaatcata      5160
     ccaaaatctg tatgggacac aggaatacca actgtttcca agggcgcggg aataccaaat      5220
     aaaccattgc aataccaagt tagtttcgca ttcgatccag acccaacttg gtattgatgg      5280
     ttttatttga ggtatttttt acccttggca ccccaccaac acaaccacca ccgagcaacc      5340
     aagggcacat tttggtccct gttatttgcc caagtaatac caaaatttgt attcccgtgt      5400
     tatttcccct gctcggggct ggccctcgtt cgtctcgcac aggaggaagc ctttccggaa      5460
     gtattcgccc aattgcgcaa aaaggtaacc ctccagaacc actcgctaat cccgctttcc      5520
     ccattcacag atgaccgcga cgtcctcagg gtcggaggac gcctctccaa gtcgtcctgc      5580
     tcgtacgaca cgaaacacca gatgatcctg ccacagaaac atcccttaac tgttgccatc      5640
     atccgcgata agcatacgca aaacatgcac gctggaatcg agctgacctt agctgccagt      5700
     cgaagggagt tctggatcat ccgtgggaga gtcgcggtca aagatgtgat tgggaagtgc      5760
     gtcgtgtgct tcgaagacaa ccctcgccca gttcgccagt acatgggaga cctgcctgcg      5820
     tgccgcctgg aaagacggta cccattccat caagtcggaa tcgatctctg tggaccagtt      5880
     ttcatcaagc agcgcaacaa acggtcgact gttcaacaca aggcctggat cgtgctgttc      5940
     gtctgcctgt cgacaaaggc aatccatctc gagctcgtca gcgagttgtc aacggcggcc      6000
     ttcctagccg ctttcgatcg tttcgtcagt cgtcgcggtc kccctgctgt tgtttggacc      6060
     gacaacggca ccaactttgt cggcgctgct aacctgcttg cggagtggga caagttcttc      6120
     gcgagtgtcg atacccaaga cgagattcaa cgcgcccaca gcaacgagat cacctggaga      6180
     ttcaaccccc cggaggcccc acactttggc gggatctggg aatcgaacat caagcaggcc      6240
     aaaaagttac tggtgaagca cacggcggga gcagccctat gtttcgaaga gatgtcgaca      6300
     gtactcgcac gtatcgaagc aatcctcaac tctcgtccga tcacgccact ctcgaacgac      6360
     ccggaggatt tcgagccact aacacccgga catttcttgg tgtttcgtcc gctgaacgct      6420
     gtcgcacgtc ccgaggtcga ccgaaccaag cacgcacgat cacgatacga gcacatcacc      6480
     aaaatcgtgc aacacttctg ggatcgctgg cacttcgagt acctgacgwc gttgcagcag      6540
     aggtacaagt ggcaccacaa aatcgtcgtt gaagttggac agctggtgct gatcaagcgg      6600
     gacaacatgc cggtgcagaa gtggctactc ggtcgagtcg ttgagctgtt ccctggcgtt      6660
     gacggagtca cgcgtgtcgt caaggtcaag accaaggatg ggatccttaa gcgagcggtt      6720
     gcaaagctgt gcttccttcc aatcgacccc gagaacggtg ttgaaagcgc agcctttcaa      6780
     aggcgggagg a                                                           6791
//
ID   BEL-66_CQ-LTR repbase;    DNA;    INV; 632 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_CQ_;
KW   BEL-66_CQ-I; BEL-66_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-632
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 286-286 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 632 BP; 211 A; 123 C; 158 G; 140 T; 0 other;
     tgtttaaagt gtgacgacaa ttggccaatc caccctacgc gcaagcagca gcaggtgaag        60
     cacgccgcgg gtgaaaacaa aacgcagtct cgagcgaact gtcagccgtc gtcgtcgtcg       120
     ttgtgtcgaa ggaagtgtcg agagaaagag agggagaata aaaatcgatg tattagtgtt       180
     agccaagtaa acaagtacat gtctttgtat gtattccccc ctgtaaatag tccctactgc       240
     agtagtctta atatagttcg tttctgactc tcgagtgaag aacacgtttt ttccactttc       300
     atccgaaacg tctcgaaaaa gttcccggcc gcgaacaaat cgtatcggtt gtatcgagtt       360
     gatttagttt cgaagaattt ggtgctaatt agcaaagtgt cgaagtgaaa cgtatcgaaa       420
     gcgaatcgag agactgtcga aactctggcg agcactgaag agtgtcgtgg aggtttcgcg       480
     aaagttagtg tcgaaacaaa aagaactgaa agtgtcgaaa caaaaagaac taaaagtgtc       540
     gaaacgaaag tgacgaaaaa tcgaaagaaa aagtgcaaaa cgagaagtgc gaacgagatc       600
     cagcttcgag caaaagtgaa ccacatcgac ca                                     632
//
ID   BEL-66_DTa-I repbase;    DNA;    INV; 5022 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   25-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5022
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 94% identity to
CC   each other.
XX
SQ   Sequence 5022 BP; 1503 A; 1156 C; 1251 G; 1112 T; 0 other;
     tgttgtagag aatagccttg atggtccgga acttgttagt atatttgatt agttttggaa        60
     cttgttagta tattttcgaa ctcaaaccta attgtcatat taagatacgg tcacacattt       120
     taagcttcca acattccaag aaaatgcgtg gaaaagacga agcgtaggta cttaagacta       180
     tgaagtttat gaagttatcg aaaacaggaa ataaaaccta caaactctac tgggagacga       240
     gaaccgagaa ccttcttgtt ggattgtggt tatatacgca aatccacgtt tggaatcaac       300
     atcttttatt tcgcttctgg tccaatacga gggacttaaa ataaatttaa aatgcggata       360
     cacggaatct cgatacggtg gcgggtgatc ctacagcgat tcccgacaaa tcgagaacaa       420
     ctccattctg gacttgtgac catgatccag caatcacaag agtttcaaat ggaaatccta       480
     aaaatgaacc aaatccagat ggacaaaaca aacttgctga ttgacgccct tgctgggggc       540
     gaggaggtgc ggagagcacg ccattaagga acggtacgag agaagatttg caacagcaag       600
     tagagaggca agatcagcag tgcgtcggcg ctcaggagcc acaccggaac ctatacgact       660
     tgccggaatt cgacggctcc ccggagcagt ggccgatgct taacgaagcc ttcctgatga       720
     cgacaaagga atatggatac tctgacaggc agaacttgtt gcgtctttag aaggcactga       780
     agggcagggc ccgggaaacc gtcgagtgtc ttctaatata catttcgaat gttggtaaca       840
     tattaggaac actaaagcag aatttcgtaa ggcccgacaa acttgtaaag agccagatct       900
     ttcgagttag agagcttcca aatattcgtg aggggaaatt aaatcagtta gtcgcagcat       960
     tcttgcaggc agccgacgct cagcaacaat taaaaaaccc taccctgatg gaagaacttg      1020
     tcctgaagct gccggtccag cagagattag agtgggcacg ctactaaaag cagttgggag      1080
     acagtaagtc gatcagacac ctgagccact ggctacagga tctagctgaa gacgtccaag      1140
     tcgccgggct ggccgatgac caggacacgt ccaagccaag gagagaaaac agattcttcc      1200
     acaccagcga gattaaagga atggagtgtc cagcctgcaa ggagaaccat gaaattgacg      1260
     tatgtgacct attcagtcag atggagcttc ctcaaagatg gcaactggcc agggacgggc      1320
     gactctgctt taactgcctg aggccagggc accggagctc aacctgcagg actcctcacc      1380
     aatgcgacct gaatctacat ccattcaggc gtcttcacaa attgctccaa gacggtgtca      1440
     gagctccaga caatgaggcc aggatcaatg atccgcaatt tacaggtgcg gcagcccaca      1500
     tcgctaatcc taagattttt ttcaagataa ttcccgtccg tctttactca aaggggaggg      1560
     aagtaagttg ccatgccttc ctagccaagg cgttggagtt gccgggacca aagaagaaat      1620
     ctgactctac aatggtttag agaacagaag gcaacacaag tatcgagcca ttttagcatc      1680
     ggaatatctg gggacaggga gcgagttatt tataacctga acaaacagcc cgtcgacttg      1740
     tctgagcttc atctaaagaa catcccatta agtgggtatg taagcgcaga gccggaggta      1800
     ctaattggcc tggataatgt acacttgatg gttccccagg aaacggtact ggcggaagga      1860
     accggaccgg ccgtaaccac aaccaagcta tgttgggtcg tgttcggaaa atgtttaaag      1920
     gagcccgacc cgaaaaacgg agcgcatctc gccggtcact gccggaatga tcaattggag      1980
     aaattggtac aggaatacat cacaaattcc aagctagacg cccgacaagc cactaagcat      2040
     ctagagggtc aagaaactga aagatctaga cacctgctat ttaatataac tcggcgcgta      2100
     ggcgtaaggt tcgagacggg attgctgtgg gcagcagatg atgttgtcct acctgaaagc      2160
     aaaaacatgg cccttaagag actgcttttt ccttgaacga aaattcaagt cagatccaga      2220
     gtactacgaa agatatagcc gcctaatgga atcgtacgag actaagggct acatcaagga      2280
     aatgaatgcg gacgagatga aggtggccgc caagaatgaa tggtacctcc cccacttcgg      2340
     agtccaaaac tgcaacaaac caggcaaatt gaggatcgtc ttcgatgcgg cagcagaaac      2400
     ggaaggggtg tccttgaact cagtgcttat gaatggacca gacgaatgtc agtcgttgat      2460
     tgaggtctta atgaagttta gacagaaaag gatcggtgtg tgcgccgata tagctgaaat      2520
     gtttcaccaa gtcatgatac gcgaagaaga ccggcctgcc caacgcattc tttggagata      2580
     atctctgtcc gacgatatta aggtatacga aatgcaggta atgacatttg gagccagatg      2640
     ttcgtcagcc tcagcccagt acgttaagaa ccgaaatgca ctttaatacg agcaggtctt      2700
     tccagaagct gttaacgcca taattaagaa ccattatgta gacgatttag ttcactgctt      2760
     cgcatctgag gatgaagcag taaggatcag tagagagata gtcgaaatcc ataggcgagc      2820
     taaagaggtt cgtctcaaac tccaccacct ttaataaagt atttgcgaaa ggtgtgtgta      2880
     atcctgtgcg cctcgacaaa agagattctt cttactacca aaaggtattg ggattgattt      2940
     ggcgcacgaa cagcgatgag tttgggtttt tattatcgtt ccaaaaaatt gatagaagac      3000
     tatttgcaga atccaaaaca cccacgaaga gagaagtact tcgagtcgta atgtcaatct      3060
     tcgatccgtt cggattccta tccgaatact ccctgatgac caagctactt ctccaatcga      3120
     tttggcaaaa gaaaacggag tgggaccaac ctataggagg cgatgatcta gagaaatgga      3180
     atcgatggct atgtcgcctg accgaggtca gccaaatcag cgcaccacgg tgttactgag      3240
     tggatttctt ctacgcctcg gtcgagttgc acatattctg tgacgcgagc gagcttgcct      3300
     atgcagcggt cggctactgg cgcataccca cagaattcgg atggaccagt gcgtttataa      3360
     tgggaaagac gaagtgcgcc ccgagctcga gctgcaggcg gccgtgttag gagttcgatt      3420
     aagaaacacc atttcgcaag gccacgacgt tcaaccgaca cgcgtctgca tgtggtcaga      3480
     ctcgaaaaac gtactggcct ggataagatc taaccataga agattcaaac cacatgttgc      3540
     acaccgagtc gacgagattt tggaaacgac ctcaatcgac gaatggaatt ggataccgac      3600
     cacggagaat cccgcagatt tcgggaccaa aattagaaaa acaacgaggg aatcgtcctg      3660
     gcttatgggt ccgaggtttc tccaagagaa cacctgggaa tcacaatatg gggacccgag      3720
     cataagcaca acagagctgg aactgcgacc caaatttatt atttctgtca gcgaggaagt      3780
     tccagccgat accgtcaatg ttgagatcaa gaatttgttg gaaaggtttt cctcattcac      3840
     aagattagta tgagtcgtgg cgtgggttta cagtctgtgc agccgaaaaa ccattaggaa      3900
     acccttcctg gaaagccgtg atacgtggcg acacagaaca aaaacactat catggccgag      3960
     ttacgccgaa agtattacat accgcactgc cggcgggcag ttcgtagggc cgcaagagat      4020
     tgtaagatat ttcagataca aagaatttcc gcaaagaatc cccaaatggg gcaacttcca      4080
     cgtgatagac tctccccgtt tgtgcgcccc ttctcttatg taggcatcga ctacatggga      4140
     cctttcctaa aagtaagagg cagaggaaca gagaaacgat ggatctgcct gttcacatgc      4200
     ctgacgatag gggccgtaca cctagatatc gccagggacc tgactactga tacctgcgtg      4260
     agaactctgc ataacttcat ggcacgtcgt ggaaaacccg tccgaatccg ctctgataac      4320
     ttggtgggcg ccgcacgaga actgagagag ggacttcaaa agcgaccata ataagatcgc      4380
     cgacaagatg gcgaccgaaa atatcgaatg gctattcaat tgccccctta accctcacca      4440
     agggggatgc tgggaacgac tagtaaggag cgttaaacga gccatcggac atgttttata      4500
     tcaagggaat ctgaaagagg atatgttata cagtctaatg tgcagtgctg agaatatagt      4560
     aaattcccgg ccgctcacac atcttgctct agatgaccca tcagacgacc cgataacccc      4620
     taatcacttc cttttaggta ctgccaactc tacccagaca ccacatccgc aggcggaggc      4680
     ctatcagtcc acaaggaagg attggcgcat cgtccagcaa cacgcacact cgttttggcg      4740
     caagtggata aacgaatatc tcccagacct ctgccggcgg acgaaatggt atatgcccgt      4800
     atcaccactc aaggtaggag acgtcgtcat cgtctgcgac ggaactgttc atcgttcgca      4860
     gtggaagaag ggaagaatca cagccattat ataaggaagt gacggccaga tccgctcggc      4920
     tacggtacac accagctcag cagacttccg ccgcccagct tgcatgctgg ccagactaaa      4980
     cgttggtgaa tctaaggagg attagattca cggtggtggg ga                         5022
//
ID   BEL-66_DTa-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.10, Created)
DT   25-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-66_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-311
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 94% identical to the other LTR.
XX
SQ   Sequence 311 BP; 105 A; 47 C; 63 G; 96 T; 0 other;
     tgttgtagag aataaccttg atggtccgga acttgttata ttatatttga ttagttttgt        60
     aacttgttag tatattttcg aactctgaac taattgtcat attaagatac gggcacacat       120
     gttaagtttc caacattcca agaaaatgcg tggaaaagac gaagcgtagg tactcaagac       180
     tatgaagttt atgaagttaa tttgttatcg aaaacaggaa ataaaaccta caaactccac       240
     tgggagacga gaaccgagaa ccttgttgtt ggattgtggt tatatacgca aatccgcgtt       300
     tgaaatcaac a                                                            311
//
ID   BEL-670_AA-I repbase;    DNA;    INV; 6213 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-670_;
KW   BEL-670_AA-I; BEL-670_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6213
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6213
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 102-102 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..6211
FT                 /product="BEL-670_AA-I_1p"
FT                 /translation="MPETDRFDCKLCRRSNNVDDMVFCAVCQEWYHYQCVG
FT                 VTSAVANESWMCARCAALPSSTRIGELYGSDPVFPATVINVPSPRTTESLP
FT                 AVAPTSSVVSLGTTAGLALATSAGLSTVSSTVSPGLVSPAVAGPSGWVPAT
FT                 TTTVTTTNYGQSLLTEQARASLQWVQDHRAFLEQQLEDSHRKELERKKALL
FT                 GQLTNNALQSVISGAANSFNEQSSAVGGVHNVGGWLERMIGEMEHLSVTPA
FT                 SAGPQVTASVTPVLNSSTPTTTGPANQYVCDPSLSSLLLGVPSGVSRVPIG
FT                 FLSEGQYSTMPSIPLYGYTQPGLDHSRQISALPISTQAPLMGLSNASPTNV
FT                 VTACPTVPTASIPQAPGFGGLTFNASVPKIHPNPTISQSPMGGYYPVNLPQ
FT                 SLPLQYPVVPTQQQLLARQVMPRDLPPFRGDPEDWPLFFTAYTNSTAACGY
FT                 SNVENLARLQRALQGKAFDAVKSRLLLPACVSQVMSTLYMLYGRPELIIQT
FT                 LLDKVRETPAPKADRLETLITFGMAVQNLYDHIEATGQMAHLSNPVLLREL
FT                 VDKIPAQQRLNWALYKQQFATADLRTFAGFMSMLVAAASDVTVTTDSQQSR
FT                 SGRGERNRDKSFLNTHAASEPITKQSNPEDVPKKLEIKEVLCLACSGRNHK
FT                 VKDCATFKRWNVDSRWKTIQDHHLCRTCLGKHGRRPCKVQAVCGVQGCQQR
FT                 HHELLHSSAQKHGPPTEEGQNSTRQDDSSEEGLNAHHATKKATLFRILPVT
FT                 LTWKGKSVETFAFLDDGSDMTLVEKSIAERLGIDDGEPLPLCLTWTSNVTR
FT                 QEPKSQRIRLEISGKDKTERFTLKDARTVSSLNLPKQTLKYGDLARQYSHL
FT                 RGLPVTSYEAASPGILIGSNNASLTATLSLREGQLGDPLASKTRLGWSVYG
FT                 YTAEGVRTKNFTLHVCDCRRESQDQHLHDLVKQHFTVENVGVSADRGPESE
FT                 EDKRARRILEATTKRVSNRFETGLLWRHDHVEFPNSFPMAMRRLQCFERRM
FT                 AKDPVLQTSVQEQIREYLESDYIHEVTKEEIESTDPKKVWYLPLGAIRNPK
FT                 KPGKIRLVWDAAAKVGGVSFNSKLLKGPDLLTPLASVLCKFRERPVAVCGD
FT                 LKQMFHQFRIRQEDAHSQRFLYREHPSQPVRAFVMDVGTFGATCSPCQAQY
FT                 IKNRNAEENEEEFPEAAEAIKEKHYVDDYLDSFDTEEEAIKVALEVTEVHA
FT                 RGGFCIRNWHSNSDALLKRVGEPRSGQPKAISIDSESGAERVLGLLWLPKE
FT                 DIIAFYSNQQMHDIAQTKRNILRCVMSLFDSQGILSHITIQGRMIIQDTWR
FT                 NQTNWDDEVTEPIRLRWFRWIKLFEEVGQMRLHRSYFPGFTAAEVGSVELH
FT                 VFTDASEEAFACAAYFRATIMGRVHVTLVMAKAKVAPLKSLSVPRLELMGA
FT                 LLGARLAKAVKEYHTLSIARRVLWTDSKTTLAWVQSQHRRYRQFVAFRVGE
FT                 ILSKTEITEWRYVPTQHNPADDATKWGKGPSVDVTSRWFRGPDFLHRPETE
FT                 WPEQRSTQSWETDEELRPCMVHQEHLVEDVYQISKFSKWERLLRAVAYVHR
FT                 YIMNCYRRSKKQELVTGYLCQEELQSAENSLWCSVQASAYPDEVTVLRQKE
FT                 GNPKKHIERTSTVYKLSPFLDEHGVMRVDSRIGAVPYVTYDFKFPIILPRH
FT                 HHLTKLIVDWYHRRYLHANHATVLNEVRQRFHISNLRTVIRQVAKECQTCK
FT                 VDKAVPVIPRMAPLPESRLAAMVRPFSYVGLDYFGPVLVRIGRSCVKRWVA
FT                 LFTCLTVRAVHLEVAHSLSTESCKMAVRRFVARRGSPIEIHSDNGTNFQGA
FT                 SRELREQLSAIEQKLAESFTNTNTKWVFNPPSAPHFGGSWERLVRSVKVAL
FT                 GSLCSDRHPDDETLLTVISEAEAIVNSRPLTSIPLENVNQEALTPNHFILL
FT                 SSNGIAQPPTMLVETMKVTRTNWNMTRQLLDQFWRRWIKEYLPTIAIRSKW
FT                 FNEAEKLRVNDLVLIVDEGQRNGWAKGRVVAVIPGSDGRIRQAMVQTAGGL
FT                 FRRPATKLAVLQVQGNGNAKPEAELQERYGSG"
XX
SQ   Sequence 6213 BP; 1611 A; 1553 C; 1694 G; 1355 T; 0 other;
     aagctttaag aaactgcttc gaacatcaag agtaaagatg cccgaaacgg atcggttcga        60
     ctgcaagctc tgccggaggt cgaataacgt ggacgatatg gtcttttgtg cggtgtgcca       120
     ggaatggtat cactaccagt gcgtaggagt aacatcagcg gtggccaacg aaagctggat       180
     gtgtgcacga tgtgcggctt tgccatcgtc cactaggatc ggggagctat acggaagcga       240
     tccagtattc ccagctactg taatcaacgt cccatcacct aggaccaccg aatcactgcc       300
     ggccgttgct ccaacttcct ccgtggtgtc gctcggcaca actgctgggc ttgcgctggc       360
     cacatcggcg ggattatcaa ctgtatcttc gactgtatct cctggactgg tgtcgcccgc       420
     cgtcgctggg ccgtccggat gggtacctgc aacgacgact acagttacta cgactaacta       480
     tggccaatct ctgctaacgg aacaggcgcg agcaagcctg caatgggttc aggaccatcg       540
     agcattcctg gagcagcaat tggaagacag ccatagaaag gaactggaga gaaagaaagc       600
     actactggga cagctcacga ataacgcctt gcaaagtgtc atcagcgggg cagcaaacag       660
     cttcaacgag cagtcctccg cggtcggcgg ggtacacaat gtcggaggct ggctggaaag       720
     gatgatcggc gagatggaac atctgtcagt cacaccagcg agcgcggggc cacaagtgac       780
     agcatccgtt acacccgtac tcaacagttc cacaccgacg actacaggtc ctgccaacca       840
     gtacgtatgc gatccgtctc tatcatcact gctgcttgga gtgcctagcg gtgtgtcgag       900
     ggttcccata ggttttttgt ctgaaggtca gtatagtact atgccatcta ttcctttgta       960
     tgggtacacg caacctgggt tggatcactc cagacaaatc agtgcgttgc caattagcac      1020
     tcaggcacct ctcatgggtt tatcgaatgc aagtccgact aacgtggtaa cggcctgccc      1080
     gacggtccca acagcgtcga ttccgcaggc accaggcttc ggggggttaa catttaacgc      1140
     aagtgtaccc aaaatacatc cgaatcctac catatcacaa tctcccatgg gcgggtatta      1200
     tccagtgaat ttgcctcaat cactcccgct acagtaccca gtggttccaa cgcagcagca      1260
     gttgttggca agacaagtta tgcccagaga tctcccaccg ttccgggggg atcctgaaga      1320
     ttggccgctg ttcttcaccg cttacaccaa ttcgacggcc gcatgcgggt actcaaatgt      1380
     ggaaaatttg gctcgacttc aacgagcgct gcaaggaaaa gccttcgatg cagtgaaaag      1440
     ccgtttactt cttccagcgt gcgtctctca agtgatgtcc accctgtaca tgctgtacgg      1500
     cagaccggaa ctgatcattc agacattatt ggacaaagtt cgcgaaactc cggcacctaa      1560
     ggcggatagg ttggaaacgc tgattacctt cggcatggcg gttcaaaacc tgtacgacca      1620
     tattgaagca actgggcaaa tggcacatct ttctaaccca gtcttactgc gagagttggt      1680
     ggacaagatt cccgctcagc aacgcttaaa ctgggcgttg tacaaacaac agtttgctac      1740
     ggccgatcta cgtaccttcg ctggattcat gtccatgcta gtagcagcag cttcggacgt      1800
     tacagtcact acggattcgc agcagtcgcg gtcgggacga ggagagcgta atagggacaa      1860
     aagcttcctt aacactcacg ctgccagtga gccaatcacg aagcagagta acccagaaga      1920
     tgtgccgaag aagttagaga tcaaggaagt gctgtgcttg gcgtgtagcg ggcgtaacca      1980
     caaggtaaaa gattgtgcga cgtttaaaag gtggaatgta gacagccggt ggaaaaccat      2040
     ccaagatcat cacctttgtc gtacgtgtct gggtaaacac ggtcggcgtc cttgcaaggt      2100
     acaggcggtt tgcggcgtac aaggctgtca acagcgacac catgaactgt tgcactccag      2160
     cgctcagaag catggaccac cgaccgagga aggtcagaac tccacaaggc aggatgattc      2220
     ttccgaagaa gggctaaacg cgcaccatgc taccaagaaa gctacactat ttagaattct      2280
     tcctgttacg ctaacgtgga agggaaaatc agtggagacg tttgcgttct tggacgacgg      2340
     atcggacatg actctggtcg agaaatcgat cgcggaacgc ttgggtatcg acgatggtga      2400
     acctctaccc ctttgtctaa cgtggaccag caacgtgact cgacaggaac cgaagtcgca      2460
     acgaattcgt ctggagatat ctggaaaaga caaaaccgaa cggttcaccc taaaggacgc      2520
     aaggacggtt tctagcctca acctaccgaa acagacgctg aagtacggag atttagcacg      2580
     gcagtattct caccttcgcg gtcttccggt caccagttat gaggccgcat cgcccggtat      2640
     cctaatcggt tcaaacaatg ccagcctgac tgcaacgttg agcctgcgcg agggtcaact      2700
     aggcgaccct ctggccagca agacacggct tggctggtcg gtttacggtt atactgctga      2760
     aggagtgagg acgaagaatt tcacgctgca cgtatgtgat tgtcgacgcg aaagccagga      2820
     tcaacacctt catgatctcg tcaagcaaca tttcacggtt gaaaacgtcg gtgtttcggc      2880
     tgacagagga ccggaatcag aggaggataa gcgtgcccgt cggatcctag aagcgacaac      2940
     gaaacgcgtt tcaaacagat tcgagaccgg cctgctatgg cgccatgacc atgtggaatt      3000
     tccgaacagt tttcccatgg ctatgcggcg tctacaatgt tttgagcgaa ggatggcgaa      3060
     agatcctgtg ctgcagacta gcgtccagga gcagatccgc gagtatctgg agagtgacta      3120
     tatccacgag gtgacgaagg aagaaataga atctacagac cctaagaagg tttggtactt      3180
     gccattgggt gccattagga atccgaagaa gccgggtaaa attaggcttg tttgggacgc      3240
     ggcggcgaaa gtagggggag tttctttcaa ctctaaactc ctgaaaggac cagacctact      3300
     gacccctctt gcttcggtgc tatgcaaatt tcgagaacgg ccggtagctg tgtgcgggga      3360
     cctgaaacag atgtttcacc aattcagaat acgccaggaa gatgcgcaca gccaacggtt      3420
     cctgtacaga gagcatcctt cgcaaccggt cagggctttc gtgatggatg ttggtacttt      3480
     tggagccaca tgctctcctt gccaggctca gtacattaaa aatcgtaacg cagaggaaaa      3540
     cgaagaagag ttcccggagg cagcagaagc aattaaggag aaacactatg tcgatgatta      3600
     cctcgacagt ttcgacactg aagaggaggc gatcaaggtc gcgctggaag tgacggaagt      3660
     ccatgctcgt ggaggcttct gcatccggaa ctggcattct aattcggacg ctcttctaaa      3720
     acgggtcggg gaacccagat caggacaacc aaaggctatc agcatcgatt cagaaagcgg      3780
     agccgaacga gtcttgggcc tcttgtggtt gccaaaagaa gacatcattg ccttttacag      3840
     caaccagcag atgcacgata ttgctcaaac gaagcgaaac atcctgcgtt gtgtcatgag      3900
     cttgttcgac tcgcagggaa tcctgtcaca catcacgatc cagggacgga tgatcatcca      3960
     ggacacctgg cgcaatcaaa ccaattggga cgacgaggtc acggaaccca tccgtttgcg      4020
     ctggttccgg tggataaaac tgttcgagga ggtcggtcag atgaggcttc acagatctta      4080
     ctttcctggt ttcactgcag cagaggtcgg ttctgttgag cttcatgttt tcacggatgc      4140
     cagcgaggaa gcgtttgctt gcgcagccta ctttcgagcc acgataatgg gaagggtgca      4200
     cgttacgctg gtgatggcca aggcgaaagt agcaccattg aaatctttat cggttccacg      4260
     tcttgagttg atgggcgctt tgctgggagc gaggctagct aaagcggtga aggagtacca      4320
     tacgctctcg atagctcgcc gtgtattgtg gacagactca aaaaccactt tggcatgggt      4380
     ccaatcacaa catcgtcgct accgacagtt cgtggcgttc cgcgtgggag aaattttaag      4440
     taaaacggaa atcactgaat ggagatacgt tcccacgcaa cataatccgg ccgacgacgc      4500
     caccaagtgg ggaaaaggtc ccagcgtaga cgtaacatct cgttggttcc gtggacctga      4560
     ctttcttcac aggcctgaaa cagaatggcc ggagcaaagg tcgacgcagt cttgggagac      4620
     ggatgaagaa ttgcggccct gcatggtgca ccaggaacac cttgtcgaag atgtctacca      4680
     gatcagcaag ttttccaagt gggaacgttt gttaagagca gtggcttacg tccatcgtta      4740
     catcatgaac tgttaccgca gaagcaaaaa gcaggagtta gtgacgggat atctgtgcca      4800
     agaagaactg cagagtgcag agaacagcct atggtgctcc gtgcaggcgt ctgcatatcc      4860
     ggatgaagta accgtgctga gacaaaagga agggaacccg aagaaacaca ttgaaaggac      4920
     aagtaccgtt tacaagctgt cgcccttctt ggatgagcat ggcgtgatgc gggtggatag      4980
     tcgtattggc gcagttccat atgtcacgta cgacttcaag tttccaatta tcctgcctcg      5040
     ccatcatcac ctcactaagc tgattgttga ctggtatcat cgacgatatc ttcacgctaa      5100
     tcatgcgacg gtactaaacg aagttcgtca acgatttcac atctccaatc tgcgtaccgt      5160
     aataaggcaa gttgcgaagg aatgccagac ttgcaaggtc gacaaagctg ttccggtgat      5220
     accaaggatg gcgcccctac cagagtctcg tctagcggcc atggtgcggc cgttctctta      5280
     cgtggggctc gattactttg gacctgtcct ggtccggatt ggacgcagct gcgttaaacg      5340
     ctgggtggcc ttgtttacgt gccttacagt gagagccgtg cacctggagg ttgctcattc      5400
     cctctcaacg gaatcgtgca agatggcagt acgtcggttt gtagcgcggc gtggatcgcc      5460
     catcgaaatc cactcagata acggcacaaa ttttcagggg gctagtcggg aactacgaga      5520
     gcagttatca gcgatcgagc aaaaactggc ggaaagcttc acgaacacca atacaaaatg      5580
     ggtcttcaat cctccatcgg caccacactt cggtggctct tgggagcgac tcgtgagatc      5640
     cgtcaaggtg gcactcggtt cattatgtag cgatcggcat ccggacgatg aaaccttgct      5700
     gactgtcatt tcggaagctg aagctatagt taactccaga ccattaacct ccattcctct      5760
     ggaaaacgtc aaccaggagg ccctgacgcc aaaccacttc atcttgttga gctcaaatgg      5820
     catcgctcaa cctcctacga tgttggtgga gacaatgaag gtcactcgta cgaattggaa      5880
     catgacaagg cagctcctgg atcaattctg gcggcggtgg atcaaagagt atcttccgac      5940
     gatcgccatc agaagcaaat ggttcaacga agccgagaaa ctcagggtga acgaccttgt      6000
     gctgatcgtg gatgaaggtc aacgcaacgg atgggcaaaa ggccgggtgg tagcggtcat      6060
     tccaggaagt gacggtcgca ttcgtcaagc gatggttcag acagctggag gattgttccg      6120
     tcgcccggcg accaagttgg cagtgctcca ggtgcaaggt aatggtaacg caaaaccaga      6180
     agcggagtta caggagcgtt acgggtcggg gga                                   6213
//
ID   BEL-670_AA-LTR repbase;    DNA;    INV; 680 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.01, Created)
DT   26-NOV-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-670_AA-I;
KW   BEL-670_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-680
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-680
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 61-61 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 680 BP; 218 A; 122 C; 131 G; 209 T; 0 other;
     tgttgccaac gctagcagca ctgcggattt gaatacaata tctgaccgtg atacccctcg        60
     atcacgcagt gtgcgcacca actgacacca cagaaatgtc tcgagtcatg cgtaagtcta       120
     tatgcgtgac atacgtcaat gccagggaat gaggaagata agatgttttt tcgcaagtca       180
     taggtgaagg aatattgtat tgaaactaaa tttatttctc gaagttaata gtaagcttac       240
     aaaagtattt ggatcgttct gcattttatt ggactaaaat acccggtttg ctgcactgta       300
     agttgtagta gattattaat tattgaatcc agtcctgaaa tacaaatgaa ttgttttcgc       360
     ataggttagc acaatcagaa ccagtctgtt ataaagtgaa tttaacgttt gctggtgatt       420
     attatatcga ttgtaagtta atagttattc tacccttaat gccaagatag ttacatatgt       480
     tgttctatag ggttttatac cactagagta ccactggaag catattgttg ggatagaaga       540
     actaaggaga ccagtttgta agtaactagt taaacctaac ctctctcaat tactaataaa       600
     aattctcctt agcttaaaga actcggcaca aggacatcaa ccgtgcgatt ctactagaag       660
     gtccgaaaat tttcccaaca                                                   680
//
ID   BEL-671B_AA-I repbase;    DNA;    INV; 6278 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 24.02, Created)
DT   17-JAN-2019 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-671B_;
KW   BEL-671B_AA-I; BEL-671B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6278
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6278
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6278 BP; 1739 A; 1612 C; 1514 G; 1413 T; 0 other;
     atttattatt ttcatttaca tacggaaacg agaattagcc ggtcatgtca agtcgaacct        60
     tacggtcggg caaagtggtt ggtgagacga atagtgcaaa tctttgtgca aatagtggtg       120
     tgcaagtggt ggtcacggca gcttcggagg agtcacgaac atgccaagta tgcagcggac       180
     aagatttgga cgaaatggtg caatgtgagg tctgttccaa gtggcatcac ttccaatgtg       240
     taggagtttc gcagcaaaat aggaattttc cctggagttg taccaaatgc ggatcagcga       300
     aaggtgtcca ggaaaacagt tcttctgcag ctcttcgtca aggaaacgtt gacccatctg       360
     ggcagtcgtc caattcatac tcaaagcggc ccacaatacc acctcagcat cagcagaagt       420
     cacagcaaca gcattaccag cagcgacctg aaataacagc aagtcacaca gctctatcat       480
     tggcggatga gtcgaatcaa cccaagggag aaaaccaaag accttcgttc gtcacatcac       540
     tgcacagtcc cgaaacggat cggaggctcc atcggtgtca tcaagtcgct cctcgcaagc       600
     cgtcgctaga ctgaaacttc aaatgctaga ggagataaga aacatcgagc ggcgtgaagc       660
     agaacggcaa cgtacaatcg cagcggagga agcagaaaga gaaaagacat acctggagca       720
     aaagtatcat ctgttggagc aagcaatgag cgacaatggc tcttctaaga acggttcaat       780
     atccagaacg catgagtgga tcgaagctac gaatgcgcac cgcaatggga atccagttgg       840
     tccgaacatg caaactggta aaatgcagct ttggaaccca gtaactgctc ggagtggtag       900
     tactcggtcg acgctcccgg aaccaaaccc tcctgatcca ttcccagcgc cggagtccct       960
     gctgagttgc tctataaatc cattagcact gagcgccgga atgcaggaat tagctatcgg      1020
     gtcgatgaat caagctccgt cgctggaaca atctcgaagg attccagaac cttcacgtcg      1080
     agtttcgatg gcagagatac cttcttttgg cggacacaga gtagttgcac cggccccttc      1140
     tcaaaacctt gaaatagatc catcccgtcg gttttcgcat aacgtgccgg tcccagagaa      1200
     tcaacggctt gctccacact cgaatcgacc aacggttcac aaccagagcc atccgtattc      1260
     atccactatg cgagacaacc gggcctacaa ccacgaagaa gaggaagaat ccgatgtata      1320
     tccgatttct cggaggcagt tagctgcccg acaagccatt tcgaaggatc tcccgacctt      1380
     ttctggaaac ccggaagagt ggccactatt cctatcgacc ttcaacagca ctaccgctct      1440
     ttgtggattc acaaacgaag aaaacatagt acgattgcag aaaagcttaa agggtcgagc      1500
     gtatgaggcg gtcaaaagtc gactgttgca tccttcgaat gtcagcggcg tcatgtcgac      1560
     gctcaggatg cttttcgggc aaccggaggt aattgtccac tcgatgatgt tgaagatcag      1620
     ttcgctccct gcactaagag aggacaaatt agaaacaatt gttgattttg ccgtcagcgt      1680
     ccaaaacttc tgtgcaacag tggacgcgtg tggattggaa gaatacttct acaatatgac      1740
     cttcctccac caactcgtca acaagcttcc accctcgata aaactgaatt gggcacagta      1800
     tcgactatcc ctaccgacgg tcaatttgtc gtcgttcagc ggctggctct actctctagc      1860
     agaagcagct agtgccgtta ccataccaaa caccactttc gaatccatgc ccgtacgtag      1920
     tgattcacgt gcggccaaga agagcaactc gttcgtcaac acgcattctg aggaagcatc      1980
     atcaggacat cacatcacag tgccaaaacc tgcaactgat agctgcctag tgtgcaaggg      2040
     aagttgcaag tctatcccga aatgcgaacg attcttggag ttctctcgag attcccgctt      2100
     ggcaactgta cgagatttag gcctctgtcg ccggtgtctg cgccgacaca gtggtggatg      2160
     tcaagcaaaa ctgtgtggaa gaaatggctg cgagcttaag catcatgaat tgttgcacaa      2220
     cgagcagaaa tacacacata ttccgtcaaa tacttctcca agtgacgcga gcagaccatc      2280
     accgagtcag tgcttggagt ctacatcaca tccagcgtca aattctatcg agcacggatg      2340
     tcatactcat caggtcacct ctaatcaggc tctgtttcgt tacctacccg tagtgcttca      2400
     cggaaagaat aagtcaatcg agacatttgc cttcctggat gacggttcgg aactcactct      2460
     gcttgacgaa gaacttgcgg acgagctgca gctagaaggg gaaacagtcc cgctctgcct      2520
     gctctggact ggaggaacga ggcgccgaga gagtgactct aagagtgtac aacttgagat      2580
     cgccgcgaaa cacaacggtt tcaagaagta cgccatgcat ggagtacgca ctgtggctga      2640
     acttcttctt ccatcgcaaa cgcttaaagt agaaaaacta tctgagcgat atccacacct      2700
     taaaggtctg ccgattacct cttatcataa tgtacgacca agaattctca tcggaataaa      2760
     ggatcagcac cttagccttg ttcagaagag ccgcgaggga gcgatacatg agccgatcgc      2820
     ggtcaaaact cggctaggat ggacaatttg tggagcagga agtagcaaca atgcagctaa      2880
     ccttgttcat tccgtttttc acatctgcgc ctgcagttcg tcgttggatg aagacttaca      2940
     taaaatgatg aaagagtatt tcgcagtgga tagcttggga gttactcaat caagtaaacg      3000
     tctcctctcg gccgaagaag agcgagcgca atgtctgctc gagactcgca cagttttaaa      3060
     ggaaagccgc tatgaaacag gactgttgtg gcgatacgac aatgttcggc tgccagacag      3120
     ttttccgatg gccctccgac ggcttcattg cctcaaaaag cgtatggaca aagactcttc      3180
     actagcggat gctctcaaca agaagatcag cgatttcgtc gagcagggct acgccaggaa      3240
     gctcaccaaa gaagaacttt ccgagaattt tccccggacg tggtaccttc cgatatttcc      3300
     cgttacgaat cccaacaagc cagggaaaat acggatggtg tgggacgctg ccgcggtagc      3360
     ccacggtgtg tctctgaatt cagctttgct caagggacct gatcagcttt gcgacttgtt      3420
     caccatatta gtccaattcc gtgaagggca ggttgcccta actggagacg tgcgtgaaat      3480
     gtttctgcag gtgctcatgc gtccggaaga ccagcaatgt cagcgattcc tctggtatga      3540
     caaagacgga accttgtccg tatacgttct acaggtaacg ccgagcgttt taaaggcgaa      3600
     tatccagcgg ccgtcgaagt gatccaaaag cgccactacg ttgatgatat gcttgtgagc      3660
     gtagcgaccg aagaggaagc gattgagcta gcaaagcaag tgaggaaggt acatgcggaa      3720
     ggtggcttcg aaatccgtaa ttgggttagc aacttcaaac gcgtcaccga gactttagat      3780
     gaaaaacaca tcgaagaaaa aagcctcgat ttgtcaccgg aactagctac agagaagata      3840
     ctcggtatgt ggtggcgtac cgatttggat acctttacct acaaggttgg gtgggaccga      3900
     tacggtcgag cactgctaga aggcgaacac cgtccaacaa aacgacaaat gctccgtgtg      3960
     ctcatgtccg tgttcgatcc acttgggcta atagcccagg tccttatgta cctgaaaatc      4020
     ctgctgcaag acgtctggcg ctctggcatt gactgggatg atcaagtgga tgacatcgtc      4080
     ttcgaacgtt ggcaaacatg gctccaagtt ctcccgcaaa tcgagcagat cagtatttct      4140
     cgatgttact tcagtgctcg aagcatcaac aacgaagagc tgcagcttca cacatttgta      4200
     gatgccagtg aaaacggtat cgcagccgtc tgctatttgc gcttcacccg tgacgacgtc      4260
     gttaattgta gcatagttgc cgcaaaaacc agagtcgcgc cattgaagtt cctctctata      4320
     cctagactgg agcttcaagc cgccttgatt gttgctcgac ttgctcgaac actctccgaa      4380
     gcgctcacgc tccggatctc acgtaaagtt ttctggtctg actcacaaga tgtcctgtgc      4440
     tggatcaaat ctgatcaccg tcgctactct ccatttgtag cgttccggat tagcgaaatc      4500
     ctcgagttga cggagatgaa tgagtggaga tacgttccaa ctgaactcaa cgttgcggac      4560
     gatggcacaa aatggaaagg atttccggat ttgaaacctc aagcaagatg gttcaacggc      4620
     ccaccatttc tctatcttcc gcaagatctt tggccacgca catcgagaag cttaagcacc      4680
     accgatcttg aactccgtcc cagtgctatg tcacactttg tcgcacccga gtttatcata      4740
     cgaatgaatg atttctccag ttgggttcga ttagttcgag tggttgcgct cgtacaccgt      4800
     ttctccagaa actgcaaact gaagcgccta aagatgtcaa tcataactgg cccgctgtcc      4860
     agccaagaaa taatatgtgc ggaagcatac ctacttcgtc aaacgcagct agaagcttat      4920
     cccgacgaag ttgttcttct ccaacgttcg caacatgaac cgaagctgtc caaaacaccg      4980
     ttgcctaaaa caagtccact acaccaacaa tcaccgtggc tggattaaaa tggagttgtg      5040
     cggatgcgag gccgtatcgc taactgcgac tacgcaaccg aagacgccaa aaatccagtt      5100
     attcttccac gtgaccaccc caccactcag ttgatcattg cacattttca ccaaaaattc      5160
     caccaccaaa accatgagac cgtaatcaac gaaatccgac aaaagtacaa tgttccgagg      5220
     cttcgcacag cctttgccaa cgtccgagag aaatgccaac gctgcaaaaa ccaccgaatc      5280
     gctccaaagt tgccgatcat ggccgatcta ccaacagccc gacttgatgc cttcgcacgt      5340
     cccttcactc acgtcggggt tgatttcttc ggaccctacg agatcgtcat cggccgccga      5400
     gtggaaaagc gttggggtat gctggccact tgcctcacga ctcgcgcaat tcacatcgaa      5460
     gtcgtccatt ctctcagcac cgactcgtgc atcatggcgc tgcgtaattt tatatcacga      5520
     agagggaagc cgagaacaat tcacagtgac cgggggacga attttatagg agcgaatcgg      5580
     gagatgaagg aagcgacact caccgtcgac caagaagaac tgatgaagga attcgttgac      5640
     gcagacacta catggcagtt tctcccacct tcttcaccac acatgggtgg cagttgggaa      5700
     cgcctgattg gcagtgtaaa aaagaattta atggcaatcc taccaatgag aaagctgtca      5760
     gacgaggttc tgcgaaatct acttaccgaa atagaaaaca ccgtaaactc tcgaccattg      5820
     acccacgtcc ccgtagacga cgactccgct ccagcactaa cgcccaacca cttcttgctt      5880
     ggatcgtcta atggagtgaa accactctgc accattgatg atcgtgggga gacactacga      5940
     caatgctggc gcctgtccca agtccaagcc aatcggtttt ggaagcggtg gatcaccgat      6000
     tatcttccgg aaataacccg gcgaaccaag tggttcaccg acaccaaacc aatagagatc      6060
     aacgatgtgg tagtgatcgt agatcccaag ctgccccgca attgctggcc aaagggcaga      6120
     atcatctgca tccagccagg acgtgatggt caaccgaggt cagcgacagt gaagacagcg      6180
     agtggaattt atgaacgtcc ggtagccaag ttagctgtgt tagatgtacg gcgcgttatg      6240
     gaataagctg ccttagtagg catcgtacct ggggggac                              6278
//
ID   BEL-671B_AA-LTR repbase;    DNA;    INV; 807 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 24.02, Created)
DT   17-JAN-2019 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-671B_AA-I;
KW   BEL-671B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-807
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-807
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 298-298 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 807 BP; 272 A; 127 C; 152 G; 253 T; 3 other;
     tgttggcgat ttwacgccag cgcgccwctc tgtttttggt ctctatagac gaattatgtc        60
     ccaaccgata ggtacagtaa aaacggaacg cattggaata acagtttgat gggacgttgc       120
     agggatattg tttatattga attgcaaagt tgaatgagaa gtgcagatta agatagcgca       180
     gatttttgta aaattactag tgaatttctt atatattaat tacgtacatt cattagcttc       240
     atttaagagg tagtatctat gatgatctat kagatgacga agtaattgtt gagcctaata       300
     ttagtgtgat tctgcaggaa actactcgcc ggagggcaat catgcactta acctaaagta       360
     attagtaaac tttatgagtt aatgtggtaa agttagatta ttccttaaaa ctatgcattt       420
     gttaaaagct atcttaaaca ttacagtacg gttcatagta cggctagcga tcagattaca       480
     tctctattac attaactggt tcttcgacta gacattagac tggttcaaag actgtacgga       540
     ttggactcga cacgaaaaca ggactaaacg taagtcaacg aaaaagacaa tttaaatgat       600
     aaattattat ataaaacaca cagattgaac ttaaatttaa gcgaacgtta tactgttcaa       660
     tgaacgcaag atgaattcgt taaaacatat tgattcttcg caggaaaata ataattatcc       720
     ggattggaac caaaactcag tttccggttg tttcatttcc ggaattatta ttacggaacc       780
     tctgaactta gttggcaatt tccaaca                                           807
//
ID   BEL-671_AA-I repbase;    DNA;    INV; 6363 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-671_;
KW   BEL-671_AA-I; BEL-671_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6363
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6363
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 320-320 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..6328
FT                 /product="BEL-671_AA-I_1p"
FT                 /translation="MSSRTLRSGKVVGETNSANLGANSGVQVVVTADPEES
FT                 QPRRTCQVCSGQDSAEMVQCDVCSKWHHFQCVGVSQQIRIFPWSCTKCESA
FT                 KGVQQNNSSAALRLGNGDPSGQSSKSYSNRHTVLAQHKQQSQQQHHQQQPE
FT                 VTPSHIAASLADESNQPKGESQGPSFVTSLQWVVSPSRNGSQAPSVSSSRS
FT                 SQAVARLKLQMLEEMRNIERREAERQRTIAAEEAEREKTYLEQKYHLLEQA
FT                 MSEHGSSNNGSISRTQEWIKATNAHRNGNPVGPNMQTGKMQLWNPVTARSA
FT                 GTLSTLPEPNPPDPFPVPESLLSCPINPSALNAGMQQLALGSMNQDPSPEQ
FT                 SRRIPEPSRRVSMAEIPHIGGHRVAALAPSQNIEMDPARRFSHNVSVPEYQ
FT                 RFVPLSNRPAVHNQSHPYSSTMRDNRVYNQEEGEEADLYPISRKQLAARQA
FT                 ISKDLPTFSGNPEEWPLFLSTFNSTTALCGFTNEENVVRLQRSLKGRAYEA
FT                 VKSRLLHPSNVSGVMSTLRMLFGQPEVIVHSMMSKINSLPALREDKLETIV
FT                 DFAVSVQNFCATVDACGLEEYFYNMTFLHQLVNKLPPSIKLNWAQYRLSLP
FT                 TANLSSFSTWLYSLAEAASAVTIPNTTFESKPLPSDSRAAKKSNSFVNTHS
FT                 EEASSGHHSATPSSAKLAADSCLVCKGSCKSIPKCERFLEFSRDSRWATVR
FT                 DLGLCRRCLRQHSGGCQAKLCGRNGCELKHHELLHNEQKCTHIPSNTSPSD
FT                 ASRPSPNQCLESTSHPVANSTEHGCHTHQVTSNQALFRYLPVVLHGKNKSI
FT                 ETFAFLDDGSELTLLDEELADELQLEGETVPLCLLWTGGTRRRESGSKSVQ
FT                 LEIAAKHNGFKKYAMHGVRTVAELLLPSQTLKVEELSEQYPHLKGLPITSY
FT                 QDVRPRILIGIKDQHLSLVQKSREGAIHEPIAVKTRLGWTICGAGNSKNAA
FT                 NLVHSVFHICACNSSSDETLHKMMKEYFAVDSLGVVQPKKRLLSTEEERAQ
FT                 ILLETRTVLRESRYETGLLWRYDNVRLPDSFPMALQRLRCLKKRMDKDSLL
FT                 TDALNNKISDFVEKGYARKLTKEELSENIPRTWYLPIFPVTNPNKPGKIRM
FT                 VWDAAAVAHDVSLNSALLKGPDQFCDLFTILVQFREGQVALTGDVREMFLQ
FT                 VLMRPEDQQCQRFLWYEEDGTLSVYVLQVMTFGACCSPSSAQYVKNLNAER
FT                 FKGEYPAAVEVIQKRHYVDDMLVSVATEEEAIELAKQVRKVHAEGGFEIRN
FT                 WISNSKRVVDALDEKRIEEKSLDLSPELATEKILGMWWRTDLDTFTYKVGW
FT                 ERYGRALLEGEYRPTKRQMLRVLMSVFDPLGLIAQVLMYLKILLQDVWRSG
FT                 IGWDDQVDDFVFERWQTWLQVLPQIEQISIPRCYFSARSINNEELQLHTFV
FT                 DASENGIAATCYLRLNRDDVVDCSIVAAKTRVAPLKFLSIPRLELQAALIG
FT                 ARLARTLSEALTLRITRKVFWSDSQDVLCWIKSDHRRYSPFVAFRISEILE
FT                 LTEMNEWRYVPTDLNVADDGTKWKGLPDLKPEARWFNGPPFLYLPEDLWPR
FT                 TSRSSSTTDLELRPSAMSHFVAAELIVRVNDFSSWVRLVRVVALVRRFSKN
FT                 CKLKCLKMPIITGPLSSQEIICAEAYLLRQTQLEVYPDEIVLLQRSQHEPK
FT                 LSETPLPKTSPLHQKSPWLDQNGVLRMRGRIANCDYATEDAKNPVILPRDH
FT                 PTTQLIIAYFHQKFHHQNHETVINEIRQKYNIPRLRAAFANVRMKCQRCKN
FT                 HRVAPKVPIMADLPAARLDAFARPFTHVGIDFFGPYETVIGRRVEKRWGML
FT                 ATCLTTRAIHIEVAHSLSTDSCIMALRNFISRRGKPRTIHSDRGTNFVGAN
FT                 RELKAATLAVDQAELMKEFVDADTTWQFLPPSAPHMGGSWERLIGSVKKNL
FT                 MAILPMRKLSDEVLRNLLTEVENTVNSRPLTHVPVDDDSAPALTPNHFLLG
FT                 SSNGVKPLCTIDDRGETLRQCWRLSQVQANRFWKRWITDYLPEITRRTKWF
FT                 TDTKPIEIDDVVVIVDPKLPRNCWPKGRIICIQPGRDGQPRSATVKTTTGI
FT                 YERPVAKLAVLDVRRVME"
XX
SQ   Sequence 6363 BP; 1741 A; 1636 C; 1547 G; 1439 T; 0 other;
     atttattatt ttcgtttatg gtggaaacgc gaattagtcg gtcatgtcaa gtcgaacctt        60
     acgatcgggc aaagtggttg gtgagaccaa tagtgcaaat cttggtgcaa acagtggtgt       120
     gcaagtggtg gtcacggcag atccggagga gtcacaaccc agacggacat gtcaggtatg       180
     cagcggtcag gattcggccg agatggtgca atgtgacgtc tgttccaaat ggcatcactt       240
     ccaatgtgta ggagtttcgc agcaaattag gatttttccc tggagttgta ccaaatgcga       300
     atcagcgaaa ggtgtccagc aaaacaattc ttctgcagct cttcgtctag gaaacggtga       360
     tccatctggt cagtcgtcca aatcgtactc aaaccggcac acagtactgg ctcagcataa       420
     gcagcaatca cagcaacagc atcaccagca gcaacctgaa gtaacaccaa gtcacatagc       480
     tgcttcattg gcggatgagt caaaccaacc caagggagaa agtcaaggac cctcgttcgt       540
     cacttcgctg cagtgggtag tgtccccgtc ccgaaacgga tcgcaagctc catcggtgtc       600
     atcaagtcgc tcctcacaag ccgtcgctag attaaagctt caaatgttgg aggagatgag       660
     aaatatcgag cggcgtgaag cagagcggca acgtacaatc gcagcggagg aagcagaaag       720
     agagaagaca tacctggagc aaaagtatca tctgttggag caagcaatga gcgaacatgg       780
     ctcttctaac aacggttcaa tatccagaac gcaggagtgg atcaaagcta cgaatgcgca       840
     tcgcaatggg aatccagtcg gtccgaacat gcaaactggt aaaatgcagc tttggaaccc       900
     agtaactgct cggagtgctg gtactctatc aacgctcccg gagcccaacc ctccagatcc       960
     attcccagtg ccggagtccc ttctgagttg ccctataaat ccatcggcac tgaacgccgg      1020
     aatgcagcag ttagctctcg ggtcgatgaa tcaagatccg tcaccggaac aatctcgaag      1080
     gattccagaa ccttcacgtc gagtttcgat ggcagaaata cctcatattg gcggacatag      1140
     agtagctgca ctggcccctt ctcaaaacat tgaaatggat ccagcccgtc ggttttcgca      1200
     taacgtatca gtcccggagt atcaacggtt tgttccactc tcgaatcgac cagcagttca      1260
     caatcagagc catccttatt catccactat gcgagacaac cgggtttaca atcaagaaga      1320
     aggggaagaa gccgatttat atccgatttc tcggaagcag ttagctgcgc gacaagccat      1380
     ctcaaaggat cttccgacgt tttctggaaa cccggaagag tggcctctgt tcctatcaac      1440
     ctttaacagc accaccgctc tttgtggatt cacaaacgaa gaaaatgtgg tacgcttgca      1500
     gagaagcttg aaaggtcggg cttatgaagc ggtcaagagt cgactgttac atccttcgaa      1560
     tgtcagcggg gtcatgtcga cactcaggat gcttttcggg caaccggaag taatcgtcca      1620
     ctcgatgatg tcgaagatca actctctccc tgcactgaga gaggacaaat tagaaacaat      1680
     tgttgatttt gccgtcagcg tccaaaactt ctgcgcaaca gtggacgcgt gtggattgga      1740
     agaatacttc tacaacatga ccttccttca ccaactcgtc aacaagcttc caccatcaat      1800
     aaagctgaat tgggcacagt atcgattatc tctaccgacg gccaatctgt cgtcttttag      1860
     tacctggctc tactctcttg cagaagcagc tagtgccgtt accataccaa acactacttt      1920
     cgaatccaag cccctaccta gtgattcacg tgcggccaag aaaagcaact cgtttgtcaa      1980
     cacccattct gaggaagcat cgtctggaca tcactccgca acgccatcga gcgcaaaact      2040
     tgcagctgat agctgcctag tgtgcaaagg aagttgcaag tctatcccga aatgcgaacg      2100
     attcctggag ttctctcgag attcccgctg ggcaactgta cgagatttag gcctctgccg      2160
     ccgatgtcta cggcaacaca gtggtggatg tcaagcaaaa ctgtgtggaa gaaatggctg      2220
     cgagctgaag catcatgaat tgctgcacaa cgagcagaaa tgcacacata ttccgtcaaa      2280
     tacttctcca agtgacgcta gcagaccatc accaaatcag tgtttagagt ctacatcaca      2340
     tccagtggca aattctacag agcacggatg tcacactcac caggtcacct ctaatcaggc      2400
     tctgttccgt tacctacccg tagtgcttca cggaaagaat aagtcgatcg agacatttgc      2460
     cttcctggac gacggttcag aactcactct gctcgacgaa gaacttgcgg acgagctgca      2520
     gctagaagga gaaacagtcc cgctctgctt gctctggact ggaggaacga ggcgtcgaga      2580
     gagtggctct aagagtgtac aacttgagat cgccgcgaaa cacaacggtt tcaagaagta      2640
     cgccatgcat ggagtacgca ctgtggctga acttcttctt ccatcgcaaa cgctaaaagt      2700
     tgaagagcta tccgagcaat acccacacct gaaaggtctg ccgatcactt cttatcaaga      2760
     tgtgcgaccg agaattctca tcggtataaa ggatcagcac ctcagccttg ttcagaaaag      2820
     ccgcgaggga gcgatacacg agccgatcgc ggtcaaaact aggctaggat ggacaatttg      2880
     tggggcagga aatagcaaaa atgcagcaaa tctcgtgcat tccgtttttc acatctgtgc      2940
     ctgtaattca tcatcggatg agaccttaca taaaatgatg aaggagtatt tcgccgtgga      3000
     tagcttgggt gttgttcaac caaagaaacg tctcctctcg acagaagaag agcgagcgca      3060
     gattctgctc gagactcgca cagtcttgag ggagagccgc tatgaaaccg gtttgttgtg      3120
     gcgatacgac aatgttcgac tgcctgacag ttttccgatg gccctccaac gactgcgttg      3180
     cctcaaaaag cgaatggaca aagactcttt actaacggat gctctcaaca acaagatcag      3240
     cgatttcgtc gaaaagggct acgccaggaa gctcaccaaa gaagaacttt ccgagaatat      3300
     ccctcggacg tggtaccttc cgatatttcc cgtgacgaac cccaataagc ctgggaaaat      3360
     tcgaatggtg tgggatgctg ccgcggtagc ccacgatgtg tctctgaatt cagctttgct      3420
     caagggacct gatcagttct gcgacctgtt taccatattg gtccaattcc gtgaggggca      3480
     ggttgcccta actggagacg tgcgtgaaat gttcttgcaa gtgctcatgc gtccggaaga      3540
     ccagcaatgt cagcgattcc tctggtatga ggaagatgga accttgtccg tatacgttct      3600
     gcaggtaatg acatttggag cgtgctgctc ccctagtagc gctcaatatg tgaaaaacct      3660
     taacgccgag cgttttaagg gcgaatatcc agcggctgtc gaagtgatcc agaagcgcca      3720
     ctacgttgat gacatgctcg tgagcgtggc gaccgaagaa gaagcgattg aactcgcaaa      3780
     gcaagtgagg aaggtgcatg cagaaggtgg ctttgagatc cgtaattgga ttagcaactc      3840
     caaacgcgtc gtcgatgcct tagatgagaa acgcatcgaa gaaaaaagcc ttgatttgtc      3900
     accggaacta gcaacagaga agatactcgg tatgtggtgg cgtaccgact tggatacctt      3960
     cacctacaag gttgggtggg aacgatacgg tcgagcactg ctagaaggcg aataccgtcc      4020
     aacaaaacga caaatgctac gtgtgctcat gtccgtgttc gatccacttg ggctaattgc      4080
     ccaggtcctt atgtacctga aaatcttgct gcaagacgtc tggcgctctg gcatcggctg      4140
     ggatgatcaa gtggatgact tcgtcttcga acgttggcaa acatggctcc aagtcctgcc      4200
     gcaaatcgag cagatcagca ttcctcgatg ctacttcagt gctcgtagca tcaacaacga      4260
     agagttgcaa cttcacacat tcgtggatgc cagtgaaaat ggtatcgcag ccacctgcta      4320
     tttgcgcttg aatcgtgacg acgtcgtgga ctgcagtatt gttgccgcaa aaaccagagt      4380
     tgcgccattg aagttcctct ctatacctag actggagctt caagcagcct tgattggtgc      4440
     tcgacttgca cgaacactct ccgaagcgct cactctccgg atcactcgta aagttttctg      4500
     gtctgactca caagatgtcc tgtgctggat caaatctgac caccgccgct attctccatt      4560
     tgttgcgttc cggatcagcg aaatcctcga gttaacagag atgaatgagt ggagatacgt      4620
     tcccactgac ctcaacgttg cggatgatgg cacgaaatgg aagggactcc cggatttgaa      4680
     acctgaagca agatggttca acggcccccc atttctctat ctcccggaag atctttggcc      4740
     acgcacgtcg agaagctcca gcaccaccga tcttgaacta cgtcccagtg caatgtcaca      4800
     ctttgtcgca gctgaactta tcgtaagagt gaatgatttc tccagttggg ttcgattagt      4860
     tcgagtcgtt gcgctcgtac gacgtttctc gaaaaattgc aaactgaagt gcctgaagat      4920
     gccaatcata actggcccac tgtccagcca agaaataata tgtgcggaag catacctact      4980
     tcgtcagaca cagctagaag tttatcccga cgaaattgtg cttctccaac gttcgcaaca      5040
     tgagccgaag ctgtccgaaa caccgttgcc taaaacaagc ccactacacc aaaaatcgcc      5100
     gtggctggat cagaatggag ttttgcgaat gcgaggccgt atcgcaaact gcgattatgc      5160
     aaccgaagac gccaaaaatc cagttattct tccacgtgac caccccacca ctcagttaat      5220
     cattgcatat tttcaccaaa aattccacca ccaaaatcat gagaccgtaa tcaacgaaat      5280
     ccgacagaag tacaatattc caaggcttcg cgctgccttc gccaacgtcc gaatgaaatg      5340
     ccaacgctgc aaaaaccacc gagtcgcccc aaaggtgccg atcatggccg atctaccagc      5400
     agccagactt gatgcctttg cacgtccctt tactcacgtc gggattgatt tcttcggacc      5460
     atacgagacc gtcatcggcc gccgagtgga gaagcgttgg ggtatgctgg cgacttgcct      5520
     cactactcgc gcaattcaca tcgaagtcgc ccattctctc agcaccgact cgtgcatcat      5580
     ggcactgcgt aattttatat cgcgtagagg gaagccgaga acaatccata gtgaccgggg      5640
     gacgaatttt gttggagcta atcgagagtt gaaggcagcg acactcgccg tcgaccaagc      5700
     agaactaatg aaggagttcg ttgacgcaga cactacatgg cagtttctcc ccccttctgc      5760
     accacacatg ggtggcagtt gggaacgcct gattggcagt gtgaaaaaga atttaatggc      5820
     catcctacca atgagaaaac tgtcagacga agttctgcga aatctactta ccgaagtgga      5880
     aaacaccgta aattctcgac cactgaccca cgtccccgta gacgacgact ccgctccagc      5940
     tctaacacca aaccatttct tgcttggatc gtctaatgga gtaaaaccac tctgcaccat      6000
     cgatgatcgt ggggagacac tacgacagtg ctggcgcctg tcccaagtcc aggccaatcg      6060
     gttttggaag cgttggatca ccgattatct gccagaaata acccgacgaa ccaagtggtt      6120
     caccgacacc aaaccaatag agatcgacga tgtggtagta atcgtggatc ccaagctacc      6180
     ccgcaattgt tggccaaagg gcagaatcat ctgtatccag ccaggacgtg atggtcaacc      6240
     gaggtcagca acagtgaaga caacgacagg aatttacgaa cgcccggtag ccaaattagc      6300
     tgtgctagat gtacggcgcg ttatggagta agctgcccta gtaggcatcg tacctggggg      6360
     gac                                                                    6363
//
ID   BEL-671_AA-LTR repbase;    DNA;    INV; 780 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-671_AA-I;
KW   BEL-671_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-780
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-780
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 266-266 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 780 BP; 273 A; 136 C; 142 G; 229 T; 0 other;
     tgttggcgaa ttgacgccag cgcgcctctc taatgttggt ctctatagac ggattgtgtc        60
     cccgtcgata gaaacgcttt gtaatgacag tttgatgggc cgtcgagaga tattgttttg       120
     agccatccat tgtgcaggtc atagcgaaaa agttgcaaaa aataatcatt tcaagtgaat       180
     ttattgaatt atcaaaatat atattattac catcattcaa aggtagtatt catgcagatt       240
     taaaattaat tgttatactt aatactagtg ctatttgata ggagtctact cgccgagagg       300
     caatcaggca cacctgtagt gattgataaa acttatgaac tattgtggta aaagttagat       360
     taatttcaaa tcatgcaatt acttaaagtt aacttaaata ttacagtacg actgttacga       420
     cgattgatag tacggctagc gaacagacta cgaaagaatc tgtattagaa ctggttctcc       480
     gacccaacat tagactggtt caaatactga aaagactgga ctcgacacaa aatcgggact       540
     aaacgtaagt gaactaagac aactttaggt aacaaataac gaaaatgaca gacatattga       600
     acattatatt aagcaaactt cacactatac aatgaacaca aagatgaatt tgttaaaaat       660
     caataatttt ccacaggaaa ataataatta tccggattgg aaccaaactt cagtctccgg       720
     ttgtttcatt tccgggatta ttattacgga acccccgaat tcggttggca atttccaaca       780
//
ID   BEL-672_AA-I repbase;    DNA;    INV; 6509 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-672_;
KW   BEL-672_AA-I; BEL-672_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6509
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6509
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 300-300 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..6507
FT                 /product="BEL-672_AA-I_1p"
FT                 /translation="MMPTTTRAAAKASAGGPQRICEKCKTPNHAAEMVACD
FT                 RCRRWYHRACEEMAGGFNGVWTCKNCVLIVTISEASISGKTSSTSRSTRVQ
FT                 LQLMRLEEEKKAQEKLILEQQEQDRVRQEMALAAKAALDKKYLDEKYALLM
FT                 AEAEDDEASSRRSRRSRLSRNSQVQEWIKDVDEAAGGVQVVENVDDIFPPI
FT                 SIGSVVDVPGGGMLAKYTGAVPKIPSNPLITGTSEAEKHPLPRRTIDWLAD
FT                 NVATEAMCSAAVMRNPITASTPIRSVGIASQPTAQNSLNTQSAYIQPVFTQ
FT                 PVYTHSVLTQPMQHVPIRPKLVPRPPLPTFLFSEPISRPSAEQPPVSLPPV
FT                 SESSLSPSGVGQRAEGPLSNSTSQQPPPLRTLLSQPSQPLPVTQSSIDPSL
FT                 QLTEQISSMQLPPTKQASLSQQLSWQSHTLAQQQSAMCDQVEEQSQPPSVF
FT                 RESISHTPPGRFAPQSSIHQPLPSQISLQQQAEPYVSQMQQMQNQQTMWGQ
FT                 FQQQLSARQVVPKDLPVFTGSPEEWPLFVSSFCNSTNMCGYSHAENLMRLQ
FT                 KCLKGKALEAVRSNLLLPSSVPKIMETLETLFGSPERLVQSLLNKVRSVPT
FT                 PKAERLETLVNFGLVVQNLVGHLKAANQQAHLTNPTLLQELVDKLPPHIRL
FT                 DWALYKKNVGRIDLGTFCDYMSAITSAASDVAHFTDFDGPRVGGHDKQRKE
FT                 KVFVNAHVSSEPRKFDQQRKKAENQERPCYVCQSIKHRIKDCHKFKSSSIG
FT                 DRLKVVETHQLCLICLVPHGKWACKSTRTCGTGDCGKRHHPLLHPNQQTAS
FT                 DGPVTRPKSDAVVNVHRRIDNATIFRIVPVVLYGNKSKLSTFAFLDEGSSS
FT                 TLIDKEIADLLNLDGELQPLCLTWTSKISRHEADSRKVSLRISEKDSSECF
FT                 TLVDVSTVRQLELPVQSFQYDELSRRYPHLAGLPVKSYKDATPRILIGLDN
FT                 IKLSLPLKIREGQQNGPVAAKTRLGWTVFGNTDGSKIDSWSPVLHICKSSE
FT                 EGDLHNLVKGYFAIENLGVAVDCGPETKDDRRAKEILRRTTIKCTDGHYET
FT                 GLLWRYDVVELPPSYCMAERRLLCLERKLQSHPGLREALEKQISEYQAKGY
FT                 AHKATPQEMAESEPHRTWYLPLGVVTNPRKPGKVRIVWDAAAKSNGVSLND
FT                 VLLKGPDLLTALPAVLCRFRQREVAIAGDIREMYHQLKIRKEDRQVQRFLY
FT                 RSDPSQKPNVFVMDVAIFGATCSPCSANFVKNTNATEWKNEFPEAATAVIE
FT                 NHYVDDYLDSRDTEEDMAKLASDVRKVQAEAGFELRNWRSNSKMVLQSLGE
FT                 DAAISRKDFTIDKESQIERVLGMAWLPDEDVFVYFVKLPSDAERSGSTGVV
FT                 TKRSILRFVMSVFDPLGLISNLLVHGKVIIQDLWRAQVGWDDTIPLDILEN
FT                 WNRWIEQLTKLDRLRIPRCYFSGYNPDSYQTLQLHIFVDASESAFACVAYF
FT                 RIIDYGQPRCALVASKAKVAPLKPLSIPRLELQAAVIGSRLAKSVAEYHKL
FT                 PVSRRVFWSDSKTVLSWISSDARRYRQYVAVRIGEILDESKPEEWRWVPTK
FT                 LNVADEATKWGKGPELHTDSRWITGPDFLLQPENEWPQQQVQLANTEEELR
FT                 IVHVHRAEVIIPLIEYDRFSKWERILRTTAYVYSFMDRYVKFGKQGDLRVE
FT                 RGLKQEDFQRAERALWRLAQGESYAEEIAVLQRKNDPDENCPLKLSKASAI
FT                 RQLSPFLDDFKVLRMASRIEASPLATYDAKFPIILPKEHHLTELLIDWYHR
FT                 RFGHHNSETVVNEIRQRYHISCLRTLVRKVVKKCQRCKVYKASPVVPRMAP
FT                 LPEVRVTPYVRPFSLVGIDYFGPYLIKIGRSQVKRWVALFTCLVVRAVHLE
FT                 VTTSLSTEACKLALRRFIARRGAPTQIYTDHGTNFVGASRELANQLAEMNK
FT                 ELSETFTDANTRWFFIPPSSPHMGGAWERMVRAVKAAMESVNHSRAPSEEV
FT                 FQTILCDAEAMVNSRPLTYVPLETSDQEALTPNHFILLSSHGVKQPEKAPA
FT                 TEGEALRNGWNLCRYILDQFWARWIREYLPDLTRRTKWYEEVKPIQEGDIV
FT                 FIVGEKPRNQWPRGKVVKVIPGKDGRIRQVDVRTAAGVLRRPVAKLAVLNV
FT                 LPSGNPARSEQYYEEG"
XX
SQ   Sequence 6509 BP; 1846 A; 1499 C; 1645 G; 1519 T; 0 other;
     atcttttaag aattctactc actaccactg agtaagtacc gataggttcc ttgaggtcac        60
     ataaacgacg aatacatgat gcccacgact acaagagccg cggcgaaggc cagtgctggg       120
     gggcctcagc gcatttgcga aaaatgcaaa actccaaatc acgcagcaga aatggtagct       180
     tgcgatcgat gtcgtcgttg gtaccatcgt gcatgtgagg agatggctgg gggtttcaat       240
     ggagtgtgga cgtgcaagaa ttgcgtcttg atagtgacca ttagcgaagc ctcgatatcg       300
     ggaaaaacaa gtagcacttc tcgttcgaca agagttcaac tgcagctcat gcgactagag       360
     gaggagaaga aggctcaaga aaagttgatt cttgaacaac aagaacaaga tcgtgttcgt       420
     caggaaatgg cactagcagc aaaggctgcg cttgataaaa aatacctcga cgagaaatat       480
     gcgttgctta tggctgaggc tgaagacgat gaagctagta gtcgtagaag ccgacgaagc       540
     cgtttgagcc ggaatagcca ggttcaggaa tggattaagg atgtcgacga ggctgccgga       600
     ggagtccaag tagttgaaaa cgttgacgat atcttcccgc caatttcgat tggctctgtg       660
     gttgatgtgc caggtggagg gatgctcgca aaatacaccg gagcagttcc caaaattcca       720
     tcaaacccat tgatcactgg aacgagcgag gcagagaaac atcctttacc cagacgaacg       780
     atcgactggc tcgcagataa cgttgcgact gaggctatgt gctccgcagc cgttatgaga       840
     aacccgatca cagcatctac tccaattcga tctgtgggca tagcgtctca gccaacagct       900
     caaaattcgt taaatacgca atctgcgtat atacaaccgg tgttcacgca accagtgtat       960
     acacattcgg tgctcacaca acctatgcag catgtaccca tacggccgaa gcttgttcca      1020
     cggccacctc taccaacatt cttgttttcg gaaccaatat caaggccatc agctgagcaa      1080
     ccaccagttt cacttccacc agtgagtgaa tcatcgttat caccatcagg cgtcgggcag      1140
     cgtgcagagg ggcctctatc gaattcaaca tcacaacaac cgccacctct ccgaacattg      1200
     ttatcacagc cgtcgcaacc actaccagta acgcaatcgt cgatcgatcc atcacttcaa      1260
     ttaactgagc aaatatcgag tatgcaatta ccaccaacga agcaagcgtc gctctctcag      1320
     cagttgtctt ggcagtcgca cacactcgct caacagcaat cggcgatgtg tgatcaagta      1380
     gaagaacagt cacaacctcc ttctgtattt cgagaatcaa tatcgcacac accaccaggt      1440
     cgattcgcac cgcagagctc gatacatcaa ccgttgccgt cgcaaatatc gctacagcaa      1500
     caagcagagc catatgttag tcaaatgcaa cagatgcaaa atcagcagac aatgtgggga      1560
     caattccaac aacagttgtc cgccaggcag gtggtgccta aggaccttcc agttttcact      1620
     ggtagtcctg aagaatggcc actatttgtt agcagttttt gcaactccac taatatgtgt      1680
     ggttattctc atgctgagaa tttaatgaga ttgcagaagt gcctgaaagg caaagctcta      1740
     gaggcggtac gcagtaacct tttgctgcct tcgtcggttc cgaagatcat ggaaacgctg      1800
     gagacattgt tcggaagtcc agaacgacta gttcagtcgt tgctcaacaa agtgcgcagc      1860
     gtgcctactc cgaaagctga aaggctcgaa acattggtga actttggtct agttgtccaa      1920
     aatcttgtgg gccatctcaa ggctgccaat cagcaagcgc atctcaccaa tccaactcta      1980
     ctacaggagc tggtggataa gttgccacca cacattcgat tggattgggc cttgtacaaa      2040
     aagaacgtcg gacgtatcga cttgggaacg ttctgtgact acatgagtgc cattacgtcg      2100
     gccgcgagtg atgtagcaca cttcaccgat ttcgatggac ctcgcgtagg tgggcatgac      2160
     aagcaaagga aagagaaggt gttcgttaac gctcatgttt cctccgaacc gagaaaattc      2220
     gatcaacaga ggaagaaggc tgaaaaccag gagagaccat gctatgtctg ccagagcata      2280
     aagcatcgaa ttaaggattg tcacaaattc aagtcctcat ctattggaga tcgtttgaag      2340
     gttgtggaaa ctcaccagct ttgtttgatt tgcctggtgc cgcatggaaa atgggcttgt      2400
     aaatcgacac gtacgtgtgg aaccggagat tgtggcaaga gacatcatcc gttgttacat      2460
     ccaaatcaac aaactgcctc cgacggtcct gtaacgcggc cgaaatccga cgccgttgtg      2520
     aatgttcatc gtcgaatcga caacgcaaca atattccgta tagttccggt ggtattgtac      2580
     gggaataaat ctaagttgtc tacctttgcc ttcctcgacg aaggctcatc ttcgacattg      2640
     atcgacaaag agatagcgga cctgctgaac ctcgacggcg agctgcaacc actgtgttta      2700
     acctggactt cgaagatttc ccgtcatgaa gctgattcaa ggaaggtttc cttgagaatt      2760
     tccgagaaag acagcagcga atgttttact ttggtggatg ttagcaccgt acgccagtta      2820
     gaacttccag tgcaatcttt tcaatacgat gaattgtctc gtcgatatcc tcatttggct      2880
     ggactacccg tgaaaagcta taaggacgcc actccaagaa tcttgatagg tttagacaac      2940
     ataaaactgt cgttgcctct taagatacgc gaaggacaac aaaatggacc ggtggcggca      3000
     aaaactaggt tgggatggac tgtatttgga aacactgatg gctctaaaat agattcttgg      3060
     tccccagttt tgcatatctg caagagctca gaagaaggtg acctgcacaa cctagtgaaa      3120
     ggttactttg caattgagaa ccttggagtc gccgtggact gtgggccaga aacaaaagac      3180
     gatcgacgag caaaggagat tttacgacga acgaccatca aatgtaccga cggccactat      3240
     gaaaccggtt tgttgtggcg gtacgatgtg gtagaactac cacccagcta ctgcatggct      3300
     gaacgtcgat tactctgcct ggagcgaaag ttgcagtctc atccgggact gcgggaagct      3360
     ttggaaaagc agatttccga ataccaggcc aaaggctatg ctcacaaagc aacgcctcag      3420
     gagatggcag aaagtgagcc gcatcgtaca tggtacctcc cacttggcgt ggtaacaaac      3480
     cctcgtaagc cagggaaggt acgcatcgtt tgggacgcag ccgcaaaatc aaatggtgtg      3540
     tctctaaacg acgtattgct gaagggccca gacctgctta cagcgttgcc ggcggtttta      3600
     tgtcgtttta gacagcgaga ggtagctatt gcgggagaca tacgcgaaat gtaccaccag      3660
     ctgaaaataa ggaaagagga ccgccaggta cagagatttc tataccgaag tgatccatca      3720
     cagaagccga acgttttcgt tatggacgtg gcgatttttg gagcgacttg ttcgccctgt      3780
     agcgcaaatt tcgtgaagaa tacgaacgca acggagtgga aaaatgaatt tcccgaagca      3840
     gcgacagcag tgatagaaaa ccactatgtg gacgattatt tggatagtcg tgacacggaa      3900
     gaggatatgg caaaactagc gtcagatgtg cggaaggtac aagcagaggc cggattcgaa      3960
     ttacggaatt ggcgttcgaa ctcgaaaatg gtgttgcagt cactcggaga agatgcagcg      4020
     atatcgagga aggacttcac catcgacaag gaaagtcaga tagaacgtgt ccttggaatg      4080
     gcatggttac cggatgaaga tgttttcgtg tacttcgtta aattaccaag tgatgccgag      4140
     cgttcagggt caacaggggt agtcacgaag cgcagtatcc tgagatttgt tatgagcgtc      4200
     ttcgatccgc tcggattgat ttcaaatctt ctcgttcatg ggaaggtgat aatacaagat      4260
     ctttggagag ctcaagttgg ctgggatgat actattccat tggatatact agagaattgg      4320
     aaccggtgga tcgaacaact caccaaattg gatcgcctta ggattccacg gtgctatttt      4380
     tccggatata atccggatag ctatcagacg ctgcagctac atatatttgt ggacgcaagt      4440
     gaatccgctt ttgcttgtgt cgcatatttt cgcataatcg actacggaca accacgctgc      4500
     gctttggtag cctcaaaagc caaggtggct ccattgaagc cactgtcaat tcctaggttg      4560
     gagctgcaag ctgcggttat tggcagtcgg ttggccaaat ccgtcgctga gtatcataaa      4620
     cttcccgtga gtcgtagagt attctggagc gactctaaaa ccgtactttc ttggatcagt      4680
     tcggatgctc gcagatatcg ccagtacgta gcagtgcgca taggcgaaat cttagatgaa      4740
     tcgaagcctg aagagtggcg ctgggttccc acaaaactaa acgttgcgga tgaggccact      4800
     aagtggggaa aaggcccaga attgcatacg gatagtcgct ggatcactgg accggacttt      4860
     cttctccaac cggagaatga gtggccccaa caacaagtgc agttagccaa cacggaagaa      4920
     gaattacgta tcgtacacgt gcatcgtgca gaagtgatca taccgctcat cgagtatgac      4980
     cggttctcca aatgggaacg aatacttcga accacagcgt atgtgtattc attcatggac      5040
     cgttatgtga agttcggcaa gcaaggcgat ttgcgagtcg aacgtggact gaaacaagaa      5100
     gattttcaac gagctgaacg ggctctgtgg cggcttgctc aaggagaatc atatgccgag      5160
     gaaatagcgg ttctacagag aaaaaatgat ccagatgaaa attgcccatt gaaactcagc      5220
     aaagctagtg caattcgtca gctatcaccc tttttggacg acttcaaagt acttcgtatg      5280
     gcaagtcgta tagaagcttc gccattagct acatatgatg cgaaatttcc aataattcta      5340
     cctaaggagc atcaccttac cgaactcctt atagattggt accatcgacg attcggccac      5400
     cataatagcg agaccgtggt caatgaaatc cgtcaacggt accacatttc ttgtctacga      5460
     acgctggtac gtaaagtagt taagaaatgt caaaggtgta aagtgtataa agcgagtcca      5520
     gtggtgccaa ggatggcacc tttaccagaa gtacgtgtaa ctccgtatgt tcgtccgttt      5580
     tcgctagtcg gcatagacta ttttggtcca tacttgatca agatcggccg aagtcaagtt      5640
     aagcgttggg tagcactctt cacgtgcttg gttgttagag ctgttcactt ggaagtgaca      5700
     acgtcgcttt ctacagaagc ctgcaagttg gccttacggc gattcatcgc aagacgaggt      5760
     gcgccgaccc aaatatatac cgaccatgga acgaattttg ttggtgccag tcgggaatta      5820
     gctaaccagt tagcggaaat gaacaaagag ttatcggaga cctttacgga tgctaacact      5880
     cgctggtttt tcatcccacc atcctccccg cacatgggtg gtgcgtggga aaggatggta      5940
     agagcagtta aagcagcaat ggaatcggtc aaccactctc gggcgccatc tgaggaagta      6000
     ttccagacaa tattgtgtga cgccgaagca atggtcaact ccagaccgtt gacatacgta      6060
     ccactagaaa catcggacca agaagcattg actccgaatc acttcattct tctaagctcg      6120
     catggagtca aacagccgga gaaagctcct gctacagaag gagaagcact acgaaacggg      6180
     tggaatctgt gtcgctacat cctggatcag ttttgggcaa ggtggatccg ggaatacctt      6240
     cccgatttga cgcggcgcac aaaatggtac gaggaggtga aacctattca ggaaggagat      6300
     atagtgttca tcgtaggaga aaaacctcgg aatcaatggc ctcggggtaa ggtcgtcaag      6360
     gtaatcccag gaaaagacgg ccgcatcaga caagtagacg ttcggacggc tgcaggagtt      6420
     ctacgccgtc ccgtggcaaa gctcgctgta ctcaacgttc taccgtcagg taatcctgct      6480
     agatcggagc agtattacga ggaggggaa                                        6509
//
ID   BEL-672_AA-LTR repbase;    DNA;    INV; 715 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-672_AA-I;
KW   BEL-672_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-715
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-715
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 267-267 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 715 BP; 236 A; 114 C; 152 G; 213 T; 0 other;
     tgttgcggga ggcgttacga ccgttgacgc tacatcgaaa acaaccaaca gggatactgc        60
     cgatctggca gatcgattgt cacccgcaag ctccaatgat gtaggtagaa atgtcaaaca       120
     aaatcgggac aaaagtgaaa tgtgactggt gactgagtat gagatgaaag aatttcttta       180
     gatgttaatg cattattgaa ttattattga aatcaaaact aaattaatat taaactattg       240
     ggtttacgta gaggtataat ttgagtgagt ttacatgaaa aagaattatt gtggtgaaga       300
     tttttctcta aaaactatta cattaaaatt ataggttagc gttgtgctac tgaactgctt       360
     ataactatct ttggttagcg actatattag agtctcaaac tatttcctat aaacacgatc       420
     tgtgagtaaa acttaaactc taaactgaaa cttatgacta agatgttgaa cttgactcga       480
     cataggtgaa ttgactgaat aggaggtaca caggacggtt gaggtggaca tagaagacgt       540
     agaccgaaga ctagagtcac agaattgtga gtatttgtgg gacatcatta cgtaagacct       600
     tatcactgtt accgactatg tattttagct taaaagccct tccctgccga cgaaatatat       660
     tggaattgct acaagaactg tgtcttggat ttctgcgtct tgcaccgtgt caaca            715
//
ID   BEL-673_AA-I repbase;    DNA;    INV; 6115 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-673_;
KW   BEL-673_AA-I; BEL-673_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6115
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6115
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 301-301 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..6113
FT                 /product="BEL-673_AA-I_1p"
FT                 /translation="MATASRDPRIQQNCGGCNKPSFSDGTTVACHQCHRWY
FT                 HGACAGRVGEIEDGSWSCVACVLSMSGPAKSIISTSSTRSARVRLELMRLE
FT                 EVQKAKEKHMLERQEQERQREERIQKEKEDLTQKYIDEKYALLMAETLEDG
FT                 EISVRSRASRQKSLEKVKDWMEAGHQEITVADAPLDDSIVGLPQPPVIGQQ
FT                 NSLRHGTPLSSLEANVRCQTTTQTLLQSSAPVTTVSWAANLTSRLAHDAKR
FT                 DLQIPQSSTLLGQTLSALPAPVPQLQASGSAVHQATVSSASISRTTMPAAS
FT                 TTFPIVPQVTTWKAPLIVEPGPALPSTSFHRHTIFQNNQSQQQSHSTQGVQ
FT                 ASQFPPWQPYQTQPVQSQPLLCNAAQHEALEPFVGQYQQQMAARQVVPREL
FT                 PVFSGNPEDWPIFVSSYRNSTLMCGYTDAENLMRLQKCLRGNALEVVRSNL
FT                 LLPSSVPQVLATLETLFGNPERLIQSLLARVRNTPAPNADKLETLINFGIV
FT                 VQNLVGHLKAANQQAHLANPSLLHDLVDKLPANIRLDWALYKKQLVGANLE
FT                 TFSNYMTAIISAASDVTRFDEFEPSQPARIERQKSREKSFVNTHNSFEEYK
FT                 QVKGQKGNDCTFKTVDTAKPCFVCDKLGHRVKECFEFKSFSLSERWKTVQT
FT                 HKLCHKCLVPHGKWPCRTSRSCDVSRCAGNHHSLLHPGIPETSEVAVISLH
FT                 RTPKSLTIFRIIPVILYGNTAQIDTFAFLDEGSDLTLIDEEIADFLGVEGE
FT                 RKGLCLKWTSNITRDEANSRRINLEITGAGGGKRLPLVNVRTVGRLNLPLQ
FT                 SLDYVQLAKRFPHLQKLPIRSYENATPRLLIGLSNLQLAVPLKCHEGRQNE
FT                 PVATKTRLGWTVFGNMAETNVSHSFHMCDCTTDEKLHNLVKDFFAAENSGI
FT                 MGGPLPEGKDDLRAKAILNETTRKCADGHYETGLLWRYDQFEFPPSYMMAA
FT                 RRFQCLERRLRTNPELRDNLDKQIIEYQTKGYAHKASKKELEAADPKRAWY
FT                 LPLGVVINPKKPGKVRIIWDAAAKVNGISFNSMLLKGPDMMTSLPSVLFRF
FT                 RERKFCITADIKEMYHQVKICSADRSSQRFLYRSNPTDELQTYIMDVATFG
FT                 STCSPCSALHVKNLNAEEWRDVYPKAASAIVDNHYVDDYLDSRDTEEELAN
FT                 LAIDVRTVHAKAGFDLRNWRSNSKNVLQRVGQESVNTEKKIGEDKINQTER
FT                 VLGMTWMPEEDLFTFSVNLPDDLKKIAYETTTVTKRGVLRLLMTLFDPHGL
FT                 ISNFLIHGKIIVQDLWRGGVTWDEPIPQEIYAHWKRWVNQIPALQNVQVPR
FT                 CYFSSYNVEDLETLELHVFVDASESAYACVAYFRIIEQGKPRCAFVCSKAK
FT                 VAPLKPLSIPRLELQAGVIGSRMASSIKDNHSLSIKRTVYHSDSSTLLSWI
FT                 RSDTRKYRQYVAVRVGEILENTKVSEWRWVPTKLNVADEATKWTNRPAMDP
FT                 NSKWFKGPEFLYLPEDHWPAQRGLSTDTTEDLRSICIHQEILHCAVIDVSR
FT                 FSKWERLLRSAAYVFHFVENCRLQRENRKLQLEQIDFEKAEHALWRLAQLD
FT                 EYAEEMVELMRNSKENARRQLRFDKTSKIRKLAPFLDAFGVIRMEGRIEAS
FT                 PFASFDAKYPVILPKGHYVTKLLIDWYHRRFGHRFSETVVNEIRQKFHISN
FT                 LRTLVRSVARRCNFCLVRKAEPKIPRMAPLPVARVTPFERPFSRVGVDYCG
FT                 PFAIKVLRSKVKRWVALFTCLATRAVHLEVVASLSTESCKLAFRRFIDRRG
FT                 APAEIYTDNGTNFQGTCRELAKQLARVNDGLAETFTDANTKWFFIPPASPH
FT                 MGGVWERLVRSVKAAMAGLRHLRTPTEEVFQTLCTEAESMMNCRPLTYIPL
FT                 ETSDQEALTPNHFLLLSSSGVKQSIKQPTCEGSALRSDWNQCQLMLDRFWT
FT                 RWIREYLPTITRRTKWFEDVQPLEEGSLVFIVNENERNSWLRGRVVKLIPG
FT                 ADGRIRQADVQIAGGGILRRAAAKLAVLDVLDSGKPADIGQLYGSG"
XX
SQ   Sequence 6115 BP; 1815 A; 1348 C; 1496 G; 1456 T; 0 other;
     attcttttaa gaatttcgtt cattatccgc tgataagcac acggcaagca atggcaacag        60
     catcaagaga tcccagaatt caacaaaact gtggtggttg taataaaccc agtttcagcg       120
     acgggacaac ggtcgcatgt caccaatgtc accgttggta tcacggagct tgtgcaggaa       180
     gggtcgggga gattgaggat ggcagttggt catgcgtagc gtgtgtatta tccatgagcg       240
     ggccggcgaa atcgataatc tcaacaagca gcactcgctc ggccagagta cgactggagc       300
     tgatgcgttt ggaagaggtt cagaaagcca aggaaaaaca tatgctagaa cgacaggaac       360
     aggagcggca acgagaagag cgcattcaaa aggagaagga ggatctaacc cagaaatata       420
     tcgatgaaaa atacgcatta ttgatggcgg agaccttgga ggatggagaa ataagtgtga       480
     gaagtcgagc tagtcgtcaa aagagccttg aaaaggtcaa ggattggatg gaagcaggac       540
     atcaagaaat caccgttgca gatgcgccac tcgacgattc aatagttggc ctaccacagc       600
     caccggtgat tggacaacag aatagtcttc ggcatgggac tccgctaagt tcactcgaag       660
     ctaacgtcag atgccaaact acaacacaga cgttgctgca atcatctgca ccggtcacta       720
     cggtgtcgtg ggcagcaaat ctaaccagca ggctagccca tgatgcgaaa cgagacttac       780
     aaatccctca atcatcaaca ttgttgggac agacactgtc ggcattgccc gcgccagtcc       840
     cacagcttca ggcttctgga tcggcggtac atcaagcaac agtctcgagt gcgagtattt       900
     caagaacgac aatgccagct gcatcaacta cattcccgat tgttcctcaa gtcacgactt       960
     ggaaagcacc tctaattgtg gaacctggtc cagcgttgcc atcgacgtca ttccacaggc      1020
     atacgatttt ccagaataac cagtctcaac agcaatctca ctcgacgcaa ggagttcagg      1080
     catcgcagtt cccaccatgg cagccatatc agacacaacc agttcagtca caaccactat      1140
     tgtgcaatgc ggctcagcac gaggcacttg aaccgttcgt aggtcaatat cagcagcaga      1200
     tggcagcgag acaggtagtt ccgagagaac taccagtctt ttcgggaaat ccagaggatt      1260
     ggcctatatt tgttagcagt tatcgtaatt ctacattgat gtgtggttat acagatgccg      1320
     aaaatttgat gcgtcttcaa aaatgtttgc gtggaaatgc actagaggtt gtgcgaagca      1380
     atttactact tccatcgtca gtaccacaag tactggccac attagagacc ctattcggta      1440
     acccagaaag gctcatccaa tcgctgctag ctagagtgcg aaacacacct gctcccaacg      1500
     ctgacaaact tgagacacta atcaactttg ggatcgttgt ccaaaaccta gtagggcatt      1560
     taaaggctgc caatcaacaa gctcatcttg caaatccttc gttactacac gatttggttg      1620
     acaagctgcc tgcaaatatt cgcttggact gggcgctcta caaaaagcaa ctagtagggg      1680
     ccaacctaga aacgttcagc aactacatga ctgctatcat ctcagcggca agcgacgtga      1740
     cacgttttga tgagttcgaa ccttcacaac cagccaggat cgaaagacag aaatcaaggg      1800
     agaagtcgtt cgtgaacact cacaattcat ttgaagagta caaacaagtg aaaggtcaga      1860
     aggggaacga ctgcacattc aaaactgtag atacagcaaa gccttgtttc gtatgcgata      1920
     aattagggca cagggtcaaa gaatgttttg agttcaaatc attctcctta agcgaacgct      1980
     ggaaaacggt tcaaactcac aaattatgtc ataagtgtct tgtaccgcac ggtaagtggc      2040
     cgtgtcgaac atcccggtca tgcgatgtca gcaggtgtgc tgggaatcac cattcgcttc      2100
     ttcatcccgg tattccggaa acatccgaag tcgcggtaat atccctacac cgtacaccaa      2160
     agagtttgac catctttaga attattcctg ttatattgta tgggaataca gcgcaaatcg      2220
     atacatttgc ctttttggat gaaggatcgg atttaacgct gattgacgaa gaaatcgcag      2280
     attttcttgg cgtcgaagga gaacgaaaag gtctctgttt gaagtggacg tcgaacatca      2340
     ctagagatga ggccaattct agacggatca atttggaaat aactggtgca ggaggtggaa      2400
     agcgcctacc tctagtaaat gtgcgtacgg taggtcggct aaacttaccc cttcaatcct      2460
     tggactatgt tcagttggca aaaagatttc cccatctaca gaagctgcca atacgtagtt      2520
     acgagaacgc tacgcctagg ttgttgatag gtttgagcaa tttgcagcta gcggtgcctt      2580
     tgaaatgtca cgaaggtcgc caaaatgaac ctgtggcaac caaaacgaga ctgggctgga      2640
     cagttttcgg caacatggca gaaactaacg tgtcacattc gttccatatg tgcgactgta      2700
     cgaccgacga aaaactccat aatctggtca aggatttttt cgcagcggaa aattccggaa      2760
     taatgggcgg acctttacca gaaggaaaag atgatttacg ggcaaaagcg attttgaatg      2820
     aaacaacaag aaaatgtgct gatgggcact acgaaactgg ccttttatgg cgatacgacc      2880
     agtttgagtt cccaccaagc tatatgatgg ctgccagaag atttcaatgt ttagaacgtc      2940
     gtttgcgtac aaatccggaa ttgcgagaca atctagacaa acaaatcatc gaataccaaa      3000
     cgaaaggcta cgcacataag gccagcaaga aggagttgga agctgcggat ccaaagcggg      3060
     catggtattt accactaggc gtggttatta acccgaagaa acccggaaag gtgaggatca      3120
     tatgggatgc ggccgctaag gttaacggaa tttctttcaa ctcgatgctt ctaaaagggc      3180
     cggatatgat gacttcatta ccgtcagttc tctttcgatt ccgggagcgt aaattttgca      3240
     tcacggccga catcaaagag atgtatcatc aggtcaaaat ctgctcagct gatcgttctt      3300
     cccaacgatt tttgtaccgt tctaatccaa cggacgaact gcagacctat ataatggacg      3360
     tagccacttt tggctccacg tgttctccat gttcagcact acatgttaag aatttaaacg      3420
     ccgaagagtg gagagatgtg taccctaagg cagcatctgc gatagtagac aatcattatg      3480
     tagatgacta cttagatagc cgggacacag aagaggagtt ggcaaactta gcgatcgatg      3540
     ttcgaactgt acacgccaag gcgggtttcg atctaaggaa ttggcgctct aattcaaaaa      3600
     atgttcttca acgcgtcgga caggaatcag taaacacgga gaagaaaatt ggtgaagata      3660
     agataaatca aactgagcga gtcttgggaa tgacctggat gcctgaagaa gacctgttca      3720
     cattctctgt aaatttaccc gatgatctga agaaaattgc gtacgaaact acaacagtaa      3780
     ctaagcgagg cgtattgagg ttgctgatga ctttgtttga cccacatggt ttgatctcca      3840
     acttcctaat tcatggaaaa attattgtac aagatctttg gcgaggcgga gtaacctggg      3900
     acgaaccaat tccacaggag atctacgcgc actggaaacg ctgggttaac caaattcctg      3960
     ctcttcagaa tgtccaggtt ccacgatgtt acttttcatc ttacaacgta gaagacctag      4020
     aaactcttga actccacgta tttgttgacg caagtgagtc ggcgtatgcg tgtgtcgctt      4080
     acttccgcat catcgagcaa ggcaaacctc gttgcgcatt tgtatgctcc aaagccaaag      4140
     ttgctcctct gaaaccctta tcaattccac gattagaact acaagcagga gtcataggta      4200
     gtcgaatggc ttcatccata aaggacaatc acagcctctc aatcaaacgc accgtttatc      4260
     acagcgattc cagtacacta ttatcgtgga ttagatcgga cactcgcaag taccgacaat      4320
     atgtggcagt gcgagtagga gagatcctgg agaacaccaa agtatccgaa tggcgttggg      4380
     taccaactaa actaaatgtg gctgacgaag cgacgaaatg gaccaataga ccagccatgg      4440
     atccaaatag taagtggttt aaaggaccag aattcttata tttgccagaa gaccactggc      4500
     ctgctcaaag gggattgtca acagatacca ctgaggattt acgatcgata tgtattcacc      4560
     aagaaatatt gcactgcgca gttatagacg tctcaaggtt ctctaaatgg gaacgcttgt      4620
     tgaggagtgc agcctacgtg tttcactttg ttgaaaactg tcgccttcaa agggaaaacc      4680
     ggaaactcca actagagcag attgattttg aaaaagcaga acatgccctt tggcgtttag      4740
     cccaacttga cgaatatgca gaggaaatgg tggagttaat gaggaattca aaagaaaacg      4800
     cgagacgaca gttacgcttc gataaaacca gtaaaatacg aaaacttgcg ccattcctcg      4860
     atgcatttgg tgtgataagg atggaaggtc gaattgaggc ttcaccattt gcatcattcg      4920
     atgcaaagta ccctgttatt cttcccaagg ggcactacgt gaccaagctt ttgattgact      4980
     ggtatcaccg gcgcttcgga catagattca gtgaaacggt agtgaacgag ataaggcaaa      5040
     agttccacat ttctaatctg cggactctgg ttcgtagtgt agcaaggcgg tgcaattttt      5100
     gcctggtacg gaaagcagaa ccaaaaattc caagaatggc tcctctaccc gtagcacgag      5160
     tgactccgtt tgagcggccg ttctccagag ttggagtcga ttattgtggg ccctttgcaa      5220
     taaaagttct gcgaagcaaa gtgaagcggt gggtggcgtt gttcacttgc ctagctacgc      5280
     gggcagtaca tttggaagtg gttgcgtcac tgtctacaga gtcctgcaag ctagcttttc      5340
     ggcggttcat cgatcgcaga ggtgccccag ccgagatata tacggacaac gggactaatt      5400
     ttcaaggaac gtgtcgagaa ttggcgaagc aactagcaag agtgaatgac ggattggcag      5460
     aaacctttac agacgcaaat accaagtggt tcttcattcc accagcatct ccgcacatgg      5520
     gaggagtgtg ggagcgtttg gtgcgctcgg taaaggcagc gatggctggt ctacgacatc      5580
     tgcgaactcc aacagaagaa gtatttcaga ccttatgtac agaagctgaa tcaatgatga      5640
     attgtaggcc tctaacctac ataccgttag aaacctcgga tcaagaagct ctcaccccga      5700
     accacttcct tctgttaagt tcgtcgggag tgaaacagtc catcaagcaa cctacgtgtg      5760
     aaggatcggc acttcgaagt gattggaatc aatgtcaact aatgctcgat cgtttctgga      5820
     ctagatggat ccgcgaatat ttacccacta tcacacgcag gacaaaatgg tttgaggacg      5880
     ttcaaccgtt agaagagggc tcgctggtgt tcatagtgaa cgaaaacgaa agaaatagtt      5940
     ggctgagagg cagagttgtg aagttgattc ctggagcaga tggaaggata aggcaggctg      6000
     acgtgcagat tgctggaggt ggaattttac gtcgagcggc tgcaaagtta gctgtattag      6060
     atgttttgga tagcggtaaa cctgccgata tcgggcagct ttacgggtcg gggga           6115
//
ID   BEL-673_AA-LTR repbase;    DNA;    INV; 632 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-673_AA-I;
KW   BEL-673_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-632
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-632
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 268-268 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 632 BP; 212 A; 105 C; 113 G; 202 T; 0 other;
     tgttggcact ggcatcactg acggacgcat gactgtgggc gcaacggaca gtggcgacct        60
     agataccctt catcgtgacg gataggtaga aaaacacgaa gcgaacgtca actagtatga       120
     ccaacaaatt tgattgagat ttcagtagag gcattcagaa ttatattttc ttctcttttg       180
     tatacgatac agtgtaaatt gaattcgatt attctaaatt atcttgtgaa gaattgtaag       240
     tacgattgat ttaaattgaa ctatgaattt atttcgttat taatattaca gatacctgtg       300
     tggttaacga agctttatat tcttataaaa tacccaaatt ttgtactcgc tatccgtaag       360
     ttttttatga agtaattcaa tcaataatga acttagaatt tgctaaacca gccttaaaca       420
     ttcattcaga ttgcagtacg attgtaattc accgttgagg tcaagaggag tagtttgcag       480
     actaaaagtc accgaaattg taagccaatg aaacttagaa atttgtaaac aattaaccta       540
     atgatctcta ccatttgtag cttaaaagca acattctaca ataaattgtt cgctgaagaa       600
     tcgaagactt atttcctcta acggtggtaa ca                                     632
//
ID   BEL-674_AA-I repbase;    DNA;    INV; 6953 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-674_;
KW   BEL-674_AA-I; BEL-674_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6953
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6953
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 302-302 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..6952
FT                 /product="BEL-674_AA-I_1p"
FT                 /translation="MSSQPNVRQTRSQTRAKQVNANLNPGGDNSSSHSSVS
FT                 EDFFITSMMDKDGGELRDCAGCDRPNNSERYMVQCENCNHWYHFTCANVNT
FT                 ATVRSASFVCVLCGPSGVIAAAEPTPSQVSGISSTSSVRRARVDRELQRLE
FT                 EEQKLLEELNRERIEKERALNERELQERLERGKQFIARKHELLSQQDDEEG
FT                 RSVRSMRSSQRNAKRTEDWVRQNRTTDTSGKVVDRRTPASISADADQPEDA
FT                 HLSEPQGVHVSSTPIKASAFVLEQPLVEDRAGTVSEVKSMPRTLGSITIGE
FT                 ESKSSLEIAAGTDAGERKQDNQIDLPYVDLQPYADLLKVAEVVSDTVSARN
FT                 TGAVPKINRFGAHCYKRWSVETGELRKQNALQLRQQSESDRQIIQNLMEKH
FT                 QNDIDSRREREAQLVDHIKNLQLQHADELKLAREVEISLRTQLDNRTREQS
FT                 KLKAQIDDSEKTLIEEKEKMRTSEADLRNQLEQRNRECEALRLQVAELENE
FT                 IQCLRETQQQLQCQLDEGRHRENEAIRLRRDAEKEYWNLYDEVQQVINHNA
FT                 ESVENDSCSPPLPPPPMSWIDSANVPMTEDSSKTPFLPPPPPMLLNDSLSN
FT                 ERERFLPPFVTNSGGMINTSAPIPSFSNMAASLPRINPQVYNPEGSDQGPA
FT                 LAYAGGHFGPSPQQLAARQVVTKELPFFSGDPVEWPLFISSYQHSTEACGY
FT                 TNSENLLRLQRSLKGSAKESVSSFLLHPSTVPQVMATLQQLYGRPEQIVNN
FT                 MIAKVRSTPAPKPDRLETLISFGLVVQNLCGHLKAVGLERHLSNPILLQEL
FT                 VDKLPATAKFSWALYQEQVPIVDLNVFSDYMAKISSAASGVTQLTSVPHKP
FT                 LKEERSRQKERTFINTHVSTDHPKSNRHEAEKPGTNGGKQKEKDVDKGCKI
FT                 CSICKVASHQIDTCTSFKGLDLDGRWKAVKVNKLCARCLTSHARWPCKGEV
FT                 CGINDCPKRHHRLLHFEPPTVPHTSGVVTVHRQLSSSTLFRILPVTLFGSK
FT                 GQINTHAFLDDGSSVTLIERSIAEALGVSGKEETLRIEWTGGIKKTITGTE
FT                 VVTMEVAETGTDKRYKLSEVYTVENLGLPQQTTDYAELSTRFAHLKKLPVK
FT                 SFRCAVPGVLIGQSNSHLLATLKLREGNFTEPIATKTRLGWAVCGSLRRPQ
FT                 INKQFHMSESLDVDLHEYVRHFFDIENLGVAMVPDVKCEEEQRACKILEAT
FT                 TRRLEGGKFETGLLWKHDYVEFPDSRPMAERRFKCLEKRLAKNAILYDSFR
FT                 LQISEFIEKGYIHEATKQEVDGFDQRRMWFLPIGVVVNEKKGKVRVIWDAA
FT                 AKVDGVSLNSMLLKGPDLLTPLLSVMFPYREREVAISADIKEMFLQIRIRE
FT                 PDRSALLFPYRDSPELPMKTMVSDVAIFGAACSPAHSQYVKNRNATEQETE
FT                 LPRGAAAVMKRHYVDDYVDSFDTAEEALDVAKEVIEVHKRAGFHIRNWMSS
FT                 DRKILEKLDEANQNPSKAMLPEKEKEFERVLGMAWIQHEDVFIFSLQLCEN
FT                 VRSLLYNSTVPTKREMLRLVMSIYDPLGLVASFVIHGKVIIQDVWRTDTDW
FT                 DSQVPADIATRWVEWIEALKKMDRIRIPRCYFPGYDPKSYKTLELHVFVDA
FT                 SAQAFAAVAYFRIIDQENVRVALVSSKTKVAPLRGLSIPRMELMAAVLGAR
FT                 LRRTIEENHSLAIRKTCFWSDSSTVCSWIKSDTRRYRQFVAFRVNEILDLS
FT                 SVDEWRWISTKVNVADEATKWGKGPSCSVDSRWFQGPEFLYNYETKWMAVP
FT                 EDNTDESDSELREAYVCSHQIMLPIVDVDRFSRFDRMLRAVAYVHHFVDSL
FT                 RAVKCNKSTDTVGLTSDEIQKAERTLWLAAQSEAFPDEVAVLRKNLVRNEC
FT                 QRQIPTSSSLLKQSPFIDEYGILRVGSRAVNAETLAYDAKFPIIMPRNHRI
FT                 TELLLDFYHRKYGHANDETIVNEVRQRFHVSRLRVEVRQSRKRCMWCRVYK
FT                 STPVAPKMGPLPAVRVQPYVRPFTYVGVDLFGPYLVKVGRTAVKRWVCLFT
FT                 CLTVRAVHLEVVTNLSTDACKKAFRRFVARRGAPLEVYSDNGTNFVGANRD
FT                 LQDEIRKIHSELGSTFTNAQTQWRFNPPAAPHMGGCWERMVRAVKSAMGSV
FT                 PVDRKLDDESFATVLTEAESMVNSRPLTFIPLETADHEALTPNHFLLLNSN
FT                 GIREPEKLPTDIGMALRSSWNMVKHTLDNFWRRWVIEYLPTITRRTKWFRD
FT                 VQHIKTGDLVLVVDENIRNRWLRGRVIRTVPGKDGVPRRAEVMTSSGIIKR
FT                 PVTKLAVLDITGPGDAEPEVKATRGGR"
XX
SQ   Sequence 6953 BP; 1981 A; 1546 C; 1838 G; 1588 T; 0 other;
     ttcttaaaga attcgaccgg atcacgagat gagttcgcag ccgaatgtac gacaaacccg        60
     gtcacagacg agggcaaagc aggtgaatgc taacctcaac ccggggggtg ataactcgtc       120
     gagtcattct tcagtttcgg aggatttctt tattacatct atgatggaca aagacggagg       180
     tgagttacgc gattgcgccg gttgcgatcg gcctaacaat tccgagcggt acatggttca       240
     gtgtgaaaac tgtaatcatt ggtaccactt cacctgcgcg aacgttaaca cggccacggt       300
     acgctcggcc agctttgttt gcgtactgtg cgggccaagt ggagttattg cagctgcaga       360
     accgacacca agtcaggtta gcggtatttc tagtacatcc agtgttcgta gagccagagt       420
     agatcgcgag ctacaacgcc tggaagagga gcaaaagttg cttgaagagc tgaaccgaga       480
     gcggattgaa aaggagcgag ctttgaacga gcgggaactt caggaaaggc tggagcgcgg       540
     aaagcagttc attgctcgta aacatgagtt gctcagccag caggacgacg aagaaggacg       600
     aagtgttcgt agtatgcgga gcagtcaaag gaatgcgaaa cgaacggagg attgggtaag       660
     gcagaatagg acaaccgata cctctggtaa ggtagtcgat agacggacgc ctgcgtctat       720
     atctgcggat gccgatcaac ccgaagacgc acatctgagt gaaccgcagg gagtacacgt       780
     ttcttcgacg ccgattaaag cttctgcgtt tgtattggag cagcctctcg tggaagacag       840
     agcagggacg gtatcagagg ttaaatcgat gccacgaacc ttaggcagta ttacgattgg       900
     agaggaatcc aaaagttctc tggaaatagc cgctggaacc gacgcagggg aacgaaaaca       960
     agataatcaa atcgatttac catacgtcga tctccagcca tacgcagatc ttctgaaagt      1020
     tgcggaagta gtttcggata ctgtttcagc tcggaacact ggagcggttc caaaaataaa      1080
     tcgattcgga gctcactgct ataagcgttg gagtgtggaa accggagagc ttcggaagca      1140
     gaatgccctc cagcttcggc aacaatccga gtcagaccgt cagatcattc agaatctaat      1200
     ggagaaacat cagaatgata ttgactcccg ccgtgagcgt gaagcacaac tagtggacca      1260
     tattaagaat ctccagttgc aacacgctga tgaattgaag ctagctcggg aagttgaaat      1320
     tagcttgcgc actcagctag acaatcgaac ccgtgaacaa tccaagttga aagcccagat      1380
     tgacgattcg gagaaaacac tcattgaaga gaaggagaag atgcgcactt cggaagcaga      1440
     cttgcgcaac caactggaac aacgcaacag ggaatgcgaa gcactacggc tgcaagtggc      1500
     agaactggaa aatgaaatcc agtgtcttcg ggaaacgcaa caacaattgc agtgccaatt      1560
     agacgaagga cgccatcgtg aaaacgaagc tattcgtcta cgaagagacg cagagaaaga      1620
     gtactggaat ttgtacgacg aagtgcaaca agtaatcaac cacaacgcag aatcagttga      1680
     aaatgatagc tgttctccac cgttgccgcc tcctccaatg tcgtggattg attccgccaa      1740
     cgtgccgatg actgaggatt cgtcgaaaac cccctttcta ccaccccctc ctcctatgtt      1800
     actgaacgat tctctgtcta atgaacgtga gagatttctt ccaccattcg taacaaacag      1860
     tggtgggatg atcaatacgt ctgctccaat tccgtctttt tcgaatatgg ctgcttcctt      1920
     gccgagaatc aatccccaag tgtacaatcc agaagggtct gatcaagggc cagcactggc      1980
     ttacgcgggt ggtcattttg gaccttcgcc gcaacagcta gcagccaggc aggttgtcac      2040
     taaagagcta ccgttctttt ccggcgatcc agttgaatgg ccactgttca taagtagcta      2100
     tcagcattca acggaggcgt gtggttatac taactcggaa aaccttctgc ggctgcaacg      2160
     aagtttgaaa gggagcgcga aggaatccgt aagcagcttt ctcctgcatc cgtcgacagt      2220
     cccacaggtc atggctactt tgcagcagtt atatggccga ccggagcaga tcgtaaataa      2280
     catgatcgcc aaagttcggt cgacccctgc accgaaaccc gaccgacttg agacacttat      2340
     cagttttgga ctcgttgttc aaaatctatg cgggcattta aaagcagtgg gattagaaag      2400
     gcatctgtca aacccgattc tccttcaaga gctggttgat aagcttccag caactgcaaa      2460
     gttcagctgg gcgctctatc aggaacaagt tccaattgtg gatttaaatg tattcagcga      2520
     ctacatggcc aagatatcat cagctgcaag cggggttact caactaacta gcgtaccgca      2580
     taaaccactg aaagaagaac gaagccggca gaaagagagg acgttcatca acacgcacgt      2640
     atccacggat catccgaaat cgaatcgcca tgaagcagag aaacctggca caaatggtgg      2700
     gaagcagaag gaaaaggacg tcgacaaagg ctgtaaaata tgttccattt gtaaggtagc      2760
     cagccatcaa atcgacactt gcacatcctt caagggttta gatttggatg gtagatggaa      2820
     agcagtaaaa gtgaataaac tgtgtgctcg ttgcctcaca tcacacgcac gttggccatg      2880
     taaaggagag gtttgtggaa tcaatgactg cccaaaacgg caccatcgtt tactccactt      2940
     cgagccacca acagtacctc acacaagcgg agttgtaaca gttcatcgcc agttgtcatc      3000
     ctcaacactg ttccgtatcc tcccagttac tttgtttggg agcaaaggtc agattaacac      3060
     tcacgcattc ctcgacgatg gttcatcagt tacactcatt gaacgatcga tcgcagaagc      3120
     acttggagtc agcggcaagg aagaaactct gcgtattgaa tggacgggtg gcatcaaaaa      3180
     gaccattact ggcactgaag ttgtcacgat ggaggtagcc gaaactggca cggacaagcg      3240
     gtacaagttg tccgaggtat acacggtgga aaatcttgga ttgccgcaac agaccacaga      3300
     ttacgcagag ctctctacac gctttgctca tctcaagaag cttccggtaa agagtttccg      3360
     ttgtgcagta ccaggagtct tgattggaca gagcaattca cacctactgg ccacactaaa      3420
     gcttcgggaa ggaaacttca ccgaaccaat tgctacgaag accaggcttg gatgggccgt      3480
     gtgtggaagt ctacggaggc ctcaaattaa taagcaattc catatgtctg agtcacttga      3540
     tgtggatcta cacgaatacg tccgacactt cttcgacatt gagaatttag gtgttgctat      3600
     ggtaccagat gtcaaatgcg aagaagaaca acgtgcgtgc aagatcctgg aagcgactac      3660
     aaggagattg gaaggaggaa aatttgagac gggcctgctc tggaaacatg attacgtgga      3720
     gtttccagac agccggccga tggcagagcg acgcttcaag tgcctggaaa aacgtttggc      3780
     taagaacgca atattgtatg atagttttcg gctgcagata tcggaattca ttgagaaagg      3840
     ctacatacac gaagcaacga aacaagaagt tgatgggttt gatcagcggc gtatgtggtt      3900
     tcttccaatt ggggtagtcg tcaacgagaa aaaaggaaag gttcgggtga tttgggatgc      3960
     agcggcgaaa gtcgatggtg tatcgttgaa ttctatgcta ctcaaaggtc cggatcttct      4020
     taccccatta ttgtctgtga tgttcccgta ccgcgagcga gaagttgcta tttctgccga      4080
     tatcaaagaa atgtttcttc aaatcaggat tcgcgagccg gatcgtagcg ctctgttatt      4140
     cccctacaga gattcgccag agcttcctat gaaaaccatg gtctctgatg tggcgatatt      4200
     cggagcggca tgctccccag cacattcgca gtatgtaaaa aacagaaacg cgacggaaca      4260
     ggaaacggaa ttacctcgag gagcagcggc agtaatgaaa agacactatg tggacgacta      4320
     cgtggatagc tttgatacag cagaagaagc gttggatgtg gcgaaggaag ttatcgaagt      4380
     acacaagcgt gcgggattcc atatacgtaa ttggatgtcc agcgatagaa agatcctcga      4440
     aaaattagac gaagcgaacc agaatccatc aaaagcgatg ctgccggaga aagagaagga      4500
     attcgaacgg gttttgggga tggcgtggat tcaacacgaa gacgtgttta tattttcgtt      4560
     gcagttatgt gagaatgtac gttccttact gtataattcc actgttccca caaagagaga      4620
     aatgctacgc ttggttatga gcatctacga cccactggga ttggttgcgt cctttgttat      4680
     ccacggtaaa gtcattatcc aggatgtatg gcgaactgac acggattggg acagccaagt      4740
     tccggcggat atcgccaccc gatgggtgga atggatagag gcacttaaaa aaatggatag      4800
     aatacgtatt ccacgatgct attttccagg ttacgatccg aaaagctaca aaaccttgga      4860
     gctacatgtt tttgtggatg caagtgccca ggccttcgcg gcggtggcat attttcgcat      4920
     catagaccaa gaaaacgtca gagttgctct tgtttcgtca aaaacaaagg tggcaccact      4980
     tcgaggactt tctatacctc ggatggaatt aatggcagca gtgcttggag ctcgcttgcg      5040
     gcggacaatc gaagaaaacc actcactggc gatccggaaa acttgttttt ggagtgactc      5100
     atcaacggtc tgttcttgga ttaagtcaga tacccgacgg taccgccaat tcgttgcctt      5160
     tagagtaaac gagattttgg atctctcgag tgttgatgag tggcggtgga tttcaacgaa      5220
     ggtcaacgtg gcagatgaag ccacaaaatg gggaaaaggt ccatcgtgca gcgtagacag      5280
     ccgttggttt caaggacctg aattcctcta caactatgaa acaaaatgga tggctgtccc      5340
     ggaagataac acggatgaaa gcgatagtga gttgcgcgaa gcctacgtgt gtagtcatca      5400
     aatcatgttg ccgatagtgg acgtcgatag attttctcgt ttcgatagaa tgctgcgtgc      5460
     ggtggcatac gtccaccact tcgtggacag tctacgtgct gtgaagtgta acaagtcgac      5520
     agatacagtt ggattgacaa gcgacgaaat tcaaaaagct gaacgaactt tgtggttggc      5580
     agcgcagtca gaagcgtttc cggatgaagt agcggttttg aggaaaaatc tagtacggaa      5640
     cgaatgtcag cggcaaatac caacatcaag cagtcttctc aagcagtcac catttatcga      5700
     cgagtacggt atactgcgag ttggtagcag agctgtcaac gcagaaacgc tagcctacga      5760
     tgcgaaattt cctatcatca tgcctaggaa tcatcggatt acagagttgc tgctggactt      5820
     ctaccatcgc aaatacggtc atgccaacga cgaaaccatt gtcaatgagg tgcgtcaaag      5880
     atttcatgtg tcgcgtctac gcgtagaagt tcgccagtca aggaagcgct gcatgtggtg      5940
     tcgcgtgtat aagtcaacgc ccgttgctcc gaaaatggga ccgcttccag cggtgcgagt      6000
     acaaccatat gtacgcccct ttacctacgt aggcgtagac ctgtttggac cgtatttggt      6060
     gaaagtcgga cgaactgcgg tgaaacggtg ggtttgtctt tttacttgcc taacggttcg      6120
     ggctgttcat ctcgaggtgg ttaccaattt atccactgat gcgtgcaaga aggcgttccg      6180
     aaggtttgta gcacgacggg gagcccccct agaagtttat tccgacaacg gaactaattt      6240
     tgtcggggcg aatcgggatc tacaggacga aataagaaag attcactctg aacttggcag      6300
     tactttcacg aatgcccaaa cacagtggcg gttcaaccct ccagccgctc ctcatatggg      6360
     aggctgttgg gagaggatgg tacgggccgt aaagtcagca atgggaagcg ttccggtcga      6420
     ccgaaaactg gatgacgagt cattcgccac ggtcctgact gaagcggaga gcatggtcaa      6480
     ctctcggcca ctcaccttta ttccgcttga aacggccgac catgaggcat tgactccaaa      6540
     ccactttttg ttgctgaatt cgaatggtat acgagaaccg gaaaagttac ctaccgatat      6600
     aggaatggca ctaagaagca gttggaacat ggtaaagcat acgttggaca acttttggcg      6660
     tcggtgggtg attgagtacc tgccgaccat cacaagacgg acaaagtggt ttagagacgt      6720
     gcaacatatc aagacaggag acctggtact cgtcgtggac gagaatatta ggaatcgttg      6780
     gcttcgtgga cgagtgatac gaacggtacc ggggaaagat ggagtgccac gacgagccga      6840
     agtgatgaca tcgagtggta ttattaagag gcctgttacg aagttggctg tgctggacat      6900
     aactggacct ggtgacgctg aaccggaagt taaggcgaca cgggggggga gga             6953
//
ID   BEL-674_AA-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-674_AA-I;
KW   BEL-674_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-451
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-451
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 269-269 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 451 BP; 166 A; 89 C; 72 G; 121 T; 3 other;
     tgttcgccgc aacagcccct cgtaccgagc acctctgtga tgagcaacag tgagcaacta        60
     cctgttctgc tccgctcatc tgacaactac gaacggtcag atacggtgac gggcaaaaaa       120
     caatagtaaa cagaaaacga tagtgaatag acgaaatatt gataaacgtt sttgaatttc       180
     taatatccct aatatcctac aaaaggtaaa atatacttat actwgaatct acattaaaac       240
     ttacaagcta cttacaggct aaagaataaa acttgaattg tgttgtggat agatcaaaaa       300
     ttagtacgga gaccgaattg taggtaaaca catgaatttg taattgaact tatactaaaa       360
     ataaaattct ttatagcttt aagctgatca ccaaatttgg acttattgat cactgctgga       420
     akaactccca tcacatatat ctatcccaac a                                      451
//
ID   BEL-675_AA-I repbase;    DNA;    INV; 6207 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-675_;
KW   BEL-675_AA-I; BEL-675_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6207
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 303-303 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..6205
FT                 /product="BEL-675_AA-I_1p"
FT                 /translation="MPETERNDCKVCRQSNSLDNMVQCSACEEWIHYGCAG
FT                 VDGSVRKVRNWRCETCRSSIAYRPPPSNLPLTTTLVIPSTSTLSIVTAGLE
FT                 NVSNTPMSSGAAAVVVGDSVISPIGSCSSQFSEKTKATLRQLQEQQALLEQ
FT                 EMESQHMLELARKKQHLESAISKVRGQILQSGELELPTMTTLVEESGVGRV
FT                 EEWMKRVENQLTNLSLIHPVVTEVPASVAAPFNSTSTPISGTMKDNLASSS
FT                 YAPISVSVQPNMTSAPMSTMPSGSSTFLPAAVPYSTVPSLPFQAPRFEQCM
FT                 NQGAIPRSRVMASLPLPAMCIPATATPVCSTVPVATYPRIYSGATIGEVST
FT                 GAAAPFLSSIYQPPVTGHPPIQSLPPVPGQLPLFNQPSVSGQQPLSGQPLY
FT                 AGQPNVLVNPYAPVGPTHHQLLARQVMPKDLPPFRGDPEDWPIFYSAYINS
FT                 TTACGYSDVENLARLQRALQGKAYDAVKSRLLLPACVPQVLSTLYMLFGRP
FT                 ELIIHNLLNKVREVPAPKPDRLETLISFGMAVQNLCDHLEAAGQVAHLCNP
FT                 VLLQELVEKVPGQLRLDWALYKRQFPAVDLRTFSAYLSTLVVAASDVTIIS
FT                 DSKPSKPTRNEKGKERNFLNAHGVEESAKRSPSSKPESSPLVRCLACEDPQ
FT                 HKVKDCAIFKKMDPESRWKVVQDHHLCRTCLGKHGRRPCKIQSTCGIEGCS
FT                 MRHHQLLHSALHKPNKPAKDETKDSAVTGETSERVNAHHTQKHSVLFKYLP
FT                 VRLYWKGRSVETFAFLDDGSSMTLVENTVAKELGIDDGEDLPLCLTWTSNV
FT                 TRHEPKSQRILIEISDAKQSARYTLNDTRTVKNLSLPQQSLNYEKLARQYT
FT                 HLQGLPITSFESVTAGILIGSNNASLIAALKIREGQLGDPIASRTRLGWTI
FT                 SGMAAGSNPTASASFHICECTKDLDLHDMVKEFFTVESLGVADFTRLESDD
FT                 DKRARSILAQTTRRITTGFETGLLWRYDHFKFPDSFGMAKRRLECFERRMK
FT                 ADPELHDSVHRQISEYLECGYIHQATPEELESADPERIWYLPLGAVRNARK
FT                 PGKIRLVWDAAAKVKGISFNSMILKGPDLLTPLLTVLFGFRERKVAICGDL
FT                 KQMFHQFRILANDTQSQRFLYRKDPTQPIQVYTMDVGTFGSTCSPCQAQYI
FT                 KNLNAEEHKDTFPRAASAIVFKHYVDDYLDSFDTEEEAIDVALEVKQVHAN
FT                 GGFTIRNWLSNSTTVLRRVGDSGNQESKQIEANKEKTTERVLGMSWIPSDD
FT                 QFTFEVDTDVGIVVPTKRNLLRCVMSIFDPLGLMSHFLIHGRVIIQDVWRT
FT                 HTGWDEVVSAEIQEKWRRWTAGFAELSKVRISRSYFPGFLSTQIRELQLHI
FT                 FTDASEDAYACVAYLRAEIDNEVYCALVMAKAKVAPLKALSIPRLELQGAL
FT                 LGTRMLRTIVDSHTLPIVRQVLWTDSETVLAWIRSDHRRYRQFVACRVGEI
FT                 LSKTNAEDWRWIPSKQNVADEATKWGKGPCLSSDSRWIEGPDFLRRSEAEW
FT                 PQKVTEQDSETAEELRACLVHREIVMEQLVDFSRYSKWERLVRTFAYVIRF
FT                 LDNSQRSRLEQPRTTGRLLQEEIHKSEAALWRMVQAVAYPDEVAVLLNKDS
FT                 TVNQIDKSSAIYKLSPFADELNVLRVDSRIGAAPDLPYDCKFPIILPRYHR
FT                 LTELLVDWYHRKFLHGNSETVVNEIRQRFQIPNLRTVVRQTARKCQSCKVQ
FT                 KASPVTPKMAPLPPSRLEQCGRPFTYIGLDYFGPIAVKRGRSLVKRWIALF
FT                 TCLSVRAIHLEVVHSLSTESCKMAIRRFVAMRGAPSEIYTDNGTNFQGASR
FT                 ELHQELYEINNGLADTFTDANTKWFFNPPAAPHFGGVWERLVRTVKVALAS
FT                 LTSLNNPDDETLLTVIAEASAIVNSRPLTFIPLQSMEQEALTPNHFIHLSS
FT                 DGVVRSKKPLMESEDVGRTNWDMARQMVEHFWKRWTREYLPSISRRTKWFE
FT                 EVKTPEVGDLVVLIEKNVRNGWTRGRIVSMIAGRDGRVRQAVVQTANGILR
FT                 RPMSKIAVLDVQPTSKAAPETNLQRYGSG"
XX
SQ   Sequence 6207 BP; 1662 A; 1492 C; 1630 G; 1423 T; 0 other;
     aaattcaagg ttaagtccac gatcggatta accatccgcg atgccagaga cggagcgtaa        60
     tgactgcaaa gtctgtaggc agtccaacag tctggacaat atggtccaat gttcggcctg       120
     tgaggagtgg atccattacg gatgtgcggg agtggatggc agcgtccgga aggtcagaaa       180
     ttggcgatgc gagacatgca ggtcatcgat tgcctatcgc cctccaccgt caaacctacc       240
     tctaacgaca accctggtga tcccttcaac gtcgacactg tcaattgtga ctgctgggct       300
     agagaacgtg tcaaatactc cgatgtcgtc tggtgctgcg gctgtagttg taggcgatag       360
     tgttatcagc ccaatcggga gctgttcctc ccagttctct gaaaagacaa aggctactct       420
     tcgccaacta caggagcaac aagcgcttct agaacaggag atggaatctc agcacatgct       480
     ggagctggca aggaagaagc aacatttaga gtcagcgatt tcgaaggtca gaggtcagat       540
     tctgcaaagt ggagaactgg aattaccgac gatgactacg ttagtcgagg aatccggagt       600
     aggacgagtg gaagaatgga tgaaaagggt ggaaaatcag ctgacgaacc tgtcactcat       660
     acatccagtt gtgacagaag ttcctgcatc agtggcagct ccgtttaatt caacgtccac       720
     gccaatatct ggaacgatga aagataacct ggccagttca tcgtatgctc ccatctcggt       780
     ttccgtgcaa cccaatatga cctcggcacc gatgtcaaca atgccttccg gatcatcaac       840
     gtttttgcca gcagccgtgc cgtacagtac cgtgccatca ctcccgttcc aggcaccacg       900
     gtttgagcaa tgcatgaacc aaggagctat tccgaggagt cgtgtaatgg cttcacttcc       960
     actgccagca atgtgtatac cggcaacagc aactccagta tgcagtacgg tcccagtcgc      1020
     gacatatcca cgaatttatt ccggagcaac gattggtgag gtgtcaaccg gcgctgcggc      1080
     gcctttcctt tcatcgatat atcaaccacc ggtaaccggg catccaccga ttcagagtct      1140
     gccgcctgtt cctggacaac tgcctctctt taatcagcca tctgtgtcgg gtcagcaacc      1200
     tctctcaggt cagccgttat acgctgggca gccgaacgtt ctcgtaaatc cgtatgcacc      1260
     agttggaccg actcatcacc agctattggc tcgtcaggtg atgccgaaag atctaccacc      1320
     gtttagagga gatccggagg attggccgat cttctacagt gcatacatca actcaaccac      1380
     ggcgtgcggc tattctgatg tcgaaaatct ggcgcgtttg caacgagcct tgcaaggtaa      1440
     ggcgtacgac gcagttaaaa gtcgattact gctaccggcg tgtgtacctc aggtgttgtc      1500
     cactttatat atgcttttcg ggcgccctga gcttattatt cataatttat taaataaagt      1560
     aagggaggta ccggctccaa agccggatag gttagagaca ttaatctcat ttgggatggc      1620
     tgtgcagaat ctctgcgacc atcttgaggc tgcgggtcaa gtggcacatt tgtgcaaccc      1680
     agtgttactc caagagttag tcgagaaagt tccggggcag ttgcgcctag attgggcgtt      1740
     gtacaagcgg cagtttccag cagttgatct tcgtacgttc tcggcttatt tgtctacact      1800
     tgtcgtagcg gcttcggacg ttacgatcat ttcggatagc aagccctcaa agccgactag      1860
     gaacgagaag gggaaagaaa gaaacttcct taacgctcat ggggttgagg aatcagcgaa      1920
     gagatccccg tcatcgaagc ccgagtcctc tccattagta cggtgtctag cgtgtgaaga      1980
     tccgcagcac aaagttaaag attgtgcaat tttcaagaaa atggatccag aaagtcgttg      2040
     gaaggtcgtc caagatcacc atctgtgccg gacgtgcttg ggtaagcacg gtcgtcgacc      2100
     ctgtaagata caatccacct gtggcataga gggatgttca atgcgtcatc atcaacttct      2160
     acattctgct ctccacaagc caaacaagcc ggcgaaagat gaaacgaagg actcagcggt      2220
     aacaggagaa acaagtgaac gggtaaacgc acatcacact cagaagcact ctgttctttt      2280
     caaatatcta cctgtacgct tgtactggaa aggtagatcg gtggaaacat ttgcgttttt      2340
     agacgacgga tcatccatga ctctggtaga aaatacggtg gcgaaagagc tcggaattga      2400
     cgacggagaa gatcttccgc tttgtctaac atggacgagc aatgtaacac gacacgaacc      2460
     aaaatctcag cggattctga tcgagatcag cgacgccaag cagtctgcaa gatacacact      2520
     gaacgatacg cgcacagtga agaacctcag tctgccgcag caatctttga actacgagaa      2580
     gttggcacgg cagtacactc acctgcaagg actccccatc acgagttttg aatcagtgac      2640
     agctggaatc ctcatcggct ccaataacgc cagtctgata gcagcgttga agatacgaga      2700
     gggtcaacta ggcgacccca tcgcgagcag aactcggttg ggttggacaa tatcgggaat      2760
     ggcggcagga agtaatccca cagccagcgc tagcttccac atctgcgaat gtacgaaaga      2820
     tcttgacttg cacgatatgg taaaggaatt ctttaccgtt gagagcttgg gagtagccga      2880
     tttcacacgt cttgagagtg atgatgacaa gcgtgcccga tcaatactgg cgcagacgac      2940
     ccgccgcatc acaacggggt tcgaaacggg acttctgtgg cgttatgatc acttcaagtt      3000
     tcctgacagt ttcggtatgg ccaagaggcg actagagtgt ttcgaacggc ggatgaaagc      3060
     agacccagaa cttcatgaca gtgtacatcg acaaatcagc gagtatctcg agtgcggcta      3120
     catacaccaa gctactccag aggagctgga gtcagcggac ccggaaagga tttggtacct      3180
     acctttggga gcagtgcgaa atgccagaaa gccgggaaaa atacgccttg tgtgggacgc      3240
     tgcagcgaag gtcaaaggaa tctctttcaa cagtatgatc ttaaaggggc ctgatcttct      3300
     aactccattg ttaacagtcc ttttcggatt ccgtgagcgg aaggtagcga tctgtgggga      3360
     tttgaaacaa atgtttcatc agtttcgcat cttggccaat gatacacagt cgcagagatt      3420
     tctttaccgt aaagacccaa ctcagcccat tcaggtatac acaatggatg tggggacctt      3480
     tgggtcgaca tgctcaccat gtcaggccca atatataaaa aacctaaacg ccgaagagca      3540
     caaggatacc ttcccgagag cagcctcagc aatagtgttc aagcattacg ttgatgacta      3600
     cttggacagt ttcgacaccg aggaggaagc aatcgacgtg gcgctggagg taaagcaagt      3660
     tcacgctaat ggaggtttta ccatcaggaa ctggctttct aattctacga ccgttcttcg      3720
     acgggtcggg gactctggga accaggaatc gaagcagatc gaagcaaaca aagagaagac      3780
     aacggagcga gttctgggaa tgtcatggat tccaagtgac gatcaattca ccttcgaagt      3840
     agatacggat gtaggaatag tggtaccaac gaagcgcaac ttgctacgat gcgtcatgag      3900
     catcttcgac cctctgggac tgatgtccca ctttctgata cacggtcgag tcattattca      3960
     ggatgtttgg aggacgcata ctggctggga cgaagtggtt tctgcagaaa tccaggaaaa      4020
     atggcgacgt tggacagcgg gatttgcgga gctctcaaaa gtccgaatca gccgctcgta      4080
     tttccctggg tttttgtcaa cgcagattag ggaacttcaa ctccacatat ttaccgatgc      4140
     aagtgaggac gcgtatgcct gtgttgctta tcttcgagcg gagattgaca acgaagttta      4200
     ctgtgctctc gtgatggcca aggcgaaggt agcaccgctt aaggctctct ctatcccgag      4260
     actggagcta caaggagccc tcctgggcac taggatgctg cggactattg tggattcgca      4320
     tacactccct atagttcgtc aagtgctgtg gacagattcg gaaacagtac ttgcctggat      4380
     acgatccgat cacagacgct accgccagtt tgtagcctgc cgagtaggtg agatattgtc      4440
     caagacaaat gcagaagatt ggcgttggat tccgtcgaaa caaaatgtgg ctgacgaagc      4500
     gaccaagtgg ggaaagggac cctgcctgag ttccgactcc agatggattg aaggaccaga      4560
     cttcttacga cgttcagaag cagaatggcc gcagaaggtt acagaacagg actcggaaac      4620
     tgccgaagag ctgcgtgctt gtttggtgca tcgagaaatc gtgatggaac agttggttga      4680
     cttcagccga tactcaaaat gggaacgttt agtgcggacc tttgcgtacg tgattcgttt      4740
     tttggataat agccaacgga gcagattgga acagccgagg acgacgggcc gcttgttgca      4800
     ggaagaaatc cacaaatctg aagcagctct atggcgcatg gtgcaagccg tagcctaccc      4860
     cgatgaagtc gctgtgctgc tcaacaagga ttcaacggtg aaccaaatcg acaaatcaag      4920
     cgccatctat aaactttcgc catttgcgga tgagctgaac gtcctgcggg tagacagccg      4980
     aattggagct gccccagatt taccttatga ctgcaaattt cccatcatac tcccacggta      5040
     ccaccgactc actgaactct tggttgattg gtatcaccgc aaatttctac acggaaacag      5100
     tgaaacagtg gtaaatgaaa tccggcagcg tttccagata ccaaaccttc gcacagttgt      5160
     acgccagacc gccagaaagt gccagagctg taaggtacag aaagcttcac ctgtcacccc      5220
     aaaaatggcc ccgttaccac cgtcgcgttt ggaacaatgc ggtcgaccgt ttacatacat      5280
     tggcctcgat tattttggac caatagctgt gaagcgtggt cgttcgctgg tgaagaggtg      5340
     gatagcctta ttcacttgct tatcggtaag agccatacat ctcgaggttg tacattcgct      5400
     atcgacggag tcatgcaaga tggcaatccg tcgctttgtt gcaatgcgtg gggcacccag      5460
     cgagatttat acggacaatg gaactaactt tcagggtgct agccgtgagc tgcatcagga      5520
     gctttatgaa atcaacaacg gattagcaga taccttcact gatgccaata cgaaatggtt      5580
     cttcaacccg cccgccgccc cacactttgg aggagtatgg gaacggcttg tacgaacggt      5640
     aaaggtcgcc ctagcatctt taaccagctt gaacaacccg gatgatgaaa cgttgctcac      5700
     ggtcatcgct gaagcaagtg ctattgtcaa ttctcgtcca ttgactttta tccctctcca      5760
     gtccatggaa caagaggcat taacgccaaa ccatttcatc catctcagtt ctgatggggt      5820
     tgtccgatcc aaaaaaccgt tgatggagtc ggaggacgtg ggtcggacga attgggatat      5880
     ggcaaggcaa atggttgaac atttttggaa gagatggaca cgcgagtatt tgcccagtat      5940
     ctcaaggcgg acgaaatggt tcgaggaggt gaagacaccg gaagtaggtg acttggtggt      6000
     gttgatcgag aagaacgtac gcaacggctg gacaaggggc cgcatagttt cgatgatagc      6060
     agggcgtgat ggtcgtgtgc gacaagccgt cgtacagaca gccaacggaa tccttcgtcg      6120
     tccaatgagt aagatcgcag tgctggacgt acaaccaact agtaaagctg cgccggagac      6180
     gaacctgcag cgttacgggt cggggag                                          6207
//
ID   BEL-675_AA-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-675_AA-I;
KW   BEL-675_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-361
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-361
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 270-270 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 361 BP; 123 A; 78 C; 66 G; 94 T; 0 other;
     tgttgcggga actagcagca ctgccacgga cacccctcat tcgccctttt ctaatgccga        60
     cgtttgacag ctacgaacga acaacgtcac aaaggccgga acgatgacaa gactgtcatc       120
     gagagggctt cattaagaac atttacattt caataaccac gtttgtaaca cgatttcttt       180
     aataaaaata ctatttgttg gattcgagga aaaattgaat tagttggata ccttaacgta       240
     agtaaccttt attgattgta aaatgaaaac attcaaataa aaagatgctc ttccatagct       300
     tgaaaaggcc aaaaaacgtc ttttacgagg cggatccgaa accctgttca acgatccaac       360
     a                                                                       361
//
ID   BEL-676_AA-I repbase;    DNA;    INV; 6091 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-676_;
KW   BEL-676_AA-I; BEL-676_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6091
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6091
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 304-304 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..6090
FT                 /product="BEL-676_AA-I_1p"
FT                 /translation="MSTETDPKDNHNCGKCNRSDSANNMVGCDLCETWVHY
FT                 DCAGVTESIADPERSWKCEKCLLELNSKTRSRKSGTSRASGQSGISQRQQL
FT                 QLQLLEEQRKLRLKHQEEEDAARKRAMEEEEMIRKKRMEEECCYLKEKFEL
FT                 LLAGSDDNDSVSGKSSVKSRTSSQKVRDWLSRERDSQQDAGGIPRNLTPTG
FT                 VQNPTIPTSIVGNDTLAVXANVSRSSGAVQPTTSMSEAITQRVSNMRVPPN
FT                 SSSTPQFSHSQGNPSGEIGQRTSISRIPMDISEFAPVVTSISRNTALYQRQ
FT                 XTSSVQPAPVVMTTDSCQISRSAAPTHSMPSSHRPACTAAYENPPARNYTG
FT                 EAAGLQFTSNYRNDQSSPGHSGSSNYGPSPVQLAARQVMSRDLPKFTGDPE
FT                 EWPIFLSAFENTTRACGYSDAENLSRLQRCLEGAALAAVKSRLLLPDSVPL
FT                 VISTLQRLFGRPEVLIHSLLNKLREVPAPKADNLKTVIEFGLAVQDLVDHM
FT                 QISRLNDHLYNPMLLHELIEKLPASYKMQWSTFKRASPVVNLSTFGNFMTE
FT                 LVNTASDVTLPDLSVASSKSAKSAGTRNRSKLFTHTEDVPIDDELVGHHSA
FT                 EQHVVKKCFYCSNVSHEIHECRHFKALDIDAKWKAMRQNGLCRICLVPHRR
FT                 WPCRSARECGVEGCRLRHHTLLHPNDMGRNSKRSSVELSVPEXGPVVHQNL
FT                 HHVIPSTLFRYLPVIIKGVDEXCVRTYAFLDDGSSSTLMEAAIATKLGVDG
FT                 PTDSFWLSWTGNVSREEKSSKRVSIIIXGEGVGTCFRLNNVRTVQKLNLPN
FT                 QTLHYDELKGIYPHLRGLPVESYSRACPGIIIGMEHARLLSTLKIREGKVN
FT                 DPVAAKTRLGWCIFGKQCSTNVSVELLNYHLDMENRELHAQMKTFFGIEEA
FT                 SITVKPEAEVDKRAKQIMMDTTHRIGNAFETGLIWKYDNVIFPDSYRMAEK
FT                 RLVQLEKRLSKDPVLKENVHRQIAEYEKKGYTHQLTEEEKRSVDPRRIWYL
FT                 PLGVVQNPKKPNKIRLVWDAAARACGVSFNDMLLKGPDLLTSLTAILLRFR
FT                 QRNIAICGDIREMFHQIFIRQADKQAQRFLWRTSPDTSPKVYVMDVATFGA
FT                 TCSPSSAQFVKNKNAREFEVQYPEAVDAIINSHYVDDYLDSVDTVDEAVNR
FT                 WNEVKFVHSQAGFEIRNFISNSPDVLLRVEENSDTKTKSMNLDQTEQKERV
FT                 LGMVWKPQTDIFTFESSLNPVIENLITERTVPTKRQVLRTVMSLFDPLGLI
FT                 THFVVQGKILMQDIWRSGTDWDEPIAANLQDLWNKWSRSLAYLNSVQVPRC
FT                 FFSNASRNALENTQIHVFVDASAEAYACVAYLRIIDRGLPRCALVAGKSKV
FT                 APLKPLSIPRLELQAALIGSRLMDNICKSLNIPLHKRFLWLDSSTVLAWLX
FT                 SDSRRYHPFVAYRVGEILSLTTVDEWRHLQSRYNVADEATKWGSGPKFDCE
FT                 SRWFSGPSFLKQPEESWPVQKNYTAPVTEELRAVYMNHHVVSQPFVDVVRF
FT                 STWQRLLRATAFALRAVKRFKGQQLPPWLSSEEFRNAENILWKQTQMESYP
FT                 DEYVTLYHNSKNPEQLKMLDKSSPLWKQSPFLDSEGIIRMDSRIKSAPNIR
FT                 DQTRFPIILPKDHYVTQLLVDSYHRQFLHANNETVLNEMRQRFCIPALRNL
FT                 IKRTTRSCQKCRIVKAAPHPPLMSPLPAVRLTSFIRPFTNTGIDYFGPLMV
FT                 KQGRSIVKRWVVLFTCLSIRAIHLEVAHGLTTQSCXMAIRRFVARRGAPET
FT                 IYSDNGTNFVGANNLLKEQLQKINEQCSATFTNARTNWVFNPPAAPHMGGA
FT                 WERLIRSVKTAMSAISDHPHHPSDEVLETVTLEAEAIVNSRPLTHVPLDSV
FT                 DDEALTPNHFLLYGXRGIVQPPAKLDESYATLRDSWKLAKNLVDEFWRRWI
FT                 REYLPELARRTKWHHPVRPLKEGDLVIVFDESKRNGWERGRIVQVMRSKDG
FT                 QVRKAMVQTANGVLTRAAVKLALLDVGELGVAKVAESRSHTGGG"
XX
SQ   Sequence 6091 BP; 1800 A; 1331 C; 1451 G; 1490 T; 19 other;
     tacttaaaga tttcatctga tcgctgtgcc aaaatgagta ctgaaacaga tccaaaggac        60
     aatcacaact gcggtaagtg taaccggtct gattccgcta acaacatggt cgggtgtgat       120
     ttgtgtgaga cttgggtcca ctacgactgt gctggtgtaa ccgagtcaat cgccgacccg       180
     gagcgtagct ggaaatgcga gaagtgtctc ctggaactga actccaaaac tcgcagtcga       240
     aagtctggaa cgtctcgtgc atcaggacaa agtggaatat ctcagcgtca acagctgcaa       300
     cttcagctgc tcgaagaaca acgcaagcta cgactaaagc accaagaaga agaggacgcg       360
     gctaggaaga gggcaatgga agaagaagag atgattcgta agaaacgaat ggaggaagaa       420
     tgctgttact tgaaggagaa gttcgagttg ctgttggcag gatctgatga taacgatagc       480
     gtgagtggaa aaagtagcgt caaaagtcgg acaagtagtc aaaaggtgcg agattggctt       540
     agtagggaac gtgattcaca acaagatgct ggaggaatcc cgcgcaatct tacaccaacc       600
     ggtgtccaaa atccaacgat tccaacgtct atcgtgggaa acgatacatt agcagtgsta       660
     gctaatgtaa gtcgatcatc tggagctgtt caacctacaa catccatgtc cgaagccata       720
     acacaacgtg taagcaacat gcgagtgccg ccaaattcct cgtctacacc acagttctcg       780
     cacagtcaag gtaacccatc aggagaaatt ggacaacgta catctatctc gcgtattccc       840
     atggatatat cagaattcgc tcccgtggtg actagtattt caagaaacac agcactttat       900
     caacgacaag stactagttc agttcaaccg gcgccagtag ttatgacgac ggactcttgc       960
     cagattagta gatcagctgc tccaacgcac agtatgccaa gttcacatcg accagcatgt      1020
     acggcggctt acgaaaatcc tccagccagg aactacacgg gggaagcagc aggacttcaa      1080
     tttacctcta attatcgtaa tgaccaatcg tctcctggac attctggctc ttcaaattat      1140
     ggaccatctc cagtacagct tgcggcacgc caggttatgt cgagagattt gcccaagttc      1200
     accggggacc ctgaggagtg gccaattttc ttgagcgcct ttgaaaacac cacacgagcc      1260
     tgtggatatt ccgatgccga aaatttatca aggcttcaac gctgtctgga aggagctgca      1320
     ctggcagcag taaaaagtcg tctattatta cctgactcag ttccccttgt catcagtaca      1380
     ctgcaaaggt tgtttggaag gccggaagta ttaatccatt cactattaaa taagctccgk      1440
     gaagtcccag caccgaaagc ggataatctt aaaacggtta tcgaatttgg cttagctgtg      1500
     caagatcttg tggatcatat gcagatttca agattgaatg atcatctata taatcccatg      1560
     ctgctacatg aactgatcga gaaattacca gcatcttaca aaatgcaatg gtctacgttc      1620
     aaamgagcca gtccagtcgt taacttatca accttcggga acttcatgac tgaacttgta      1680
     aacactgcct ccgacgtgac attaccggat ctatcggttg catcatcaaa atccgcaaag      1740
     tcagctggaa cgcgcaatag atcgaaattg ttcacgcaca ctgaagatgt ccccatagac      1800
     gatgagcttg taggtcacca ttcggcagag caacacgtag taaagaaatg tttctattgc      1860
     tccaatgtaa gtcacgagat acatgaatgt aggcacttca aagcgttgga tatagatgcg      1920
     aaatggaaag ccatgcgtca aaacggattg tgcagaatat gtttagtacc ccatcgacgg      1980
     tggccttgcc gttctgctag agaatgtgga gttgagggtt gccgcttacg acaccacaca      2040
     ctgttacatc ctaacgacat gggcagaaac agtaagcgat ctagcgtaga actcagcgtt      2100
     ccggaaawtg gaccggttgt gcatcaaaac ttacaccacg taataccaag tacactattc      2160
     cgttacctac ctgtcataat caagggagtg gacgaamagt gcgtgcgtac atatgcgttt      2220
     ttggatgatg gctcatcttc tacgcttatg gaggctgcaa tagcaacgaa gcttggtgtt      2280
     gatggaccaa ctgactcctt ttggctgagc tggacgggaa atgtcagccg agaagaaaag      2340
     agttcgaaac gcgtttccat cataatckcc ggcgaaggtg tgggaacttg tttccgactg      2400
     aataatgtac ggactgtcca gaaattgaat ctgccaaacc aaacattgca ctatgacgaa      2460
     ttgaaaggca tttatcctca cctccgagga ttaccagtkg agagctactc aagagcgtgt      2520
     ccgggaatca ttattgggat ggagcatgcg cgccttcttt cgacattgaa gattcgcgag      2580
     ggcaaagtca acgatcctgt agctgcgaag acgcgattag gatggtgtat ttttggcaaa      2640
     caatgtagta caaacgtatc ggtagaactt ctgaattacc acttggatat ggaaaacaga      2700
     gaactccatg cacaaatgaa aacatttttt ggaatcgagg aagcgagcat aacagtgaag      2760
     cccgaagctg aggttgataa acgtgcgaag cagattatga tggacactac gcacaggata      2820
     ggcaacgcct ttgagacagg tcttatctgg aaatacgata atgttatttt tccggacagt      2880
     tataggatgg cggagaagcg attagtgcaa ctggagaaac ggctgtccaa agatccggtg      2940
     cttaaggaaa atgtccatag acaaatagca gagtacgaga aaaagggcta tacccaccag      3000
     ttgacggaag aagaaaaacg ttccgttgac ccaagaagaa tttggtactt acccctcgga      3060
     gttgttcaga atcccaaaaa gccgaacaaa attcgtcttg tctgggacgc ggcggcacgc      3120
     gcctgtggag tatcgtttaa cgatatgctc cttaaaggac cagatttatt gacgtcatta      3180
     accgcaattc tcctacgatt tagacaacgg aacattgcta tttgcggtga cattagagaa      3240
     atgttccacc agatattcat tcgtcaagct gataaacagg cgcaaagatt cctctggaga      3300
     acctcacctg acacgtcccc gaaggtctac gtaatggacg tggcaacctt tggagccaca      3360
     tgctctccga gttcagctca atttgttaaa aacaaaaatg ctagagaatt tgaggtgcaa      3420
     tacccagaag cagttgatgc gattattaat agtcattatg tggatgatta tctagacagt      3480
     gttgacactg tcgacgaggc tgtcaaccgc tggaatgagg tgaagttcgt ccattctcag      3540
     gcgggattcg aaattcgtaa tttcatctcg aattctcccg atgtcttgct tcgagtagaa      3600
     gaaaatagtg acaccaagac taagtctatg aacttggacc aaaccgagca gaaagaacgc      3660
     gtcctcggaa tggtatggaa gccgcaaacc gacatattca ccttcgagtc ttcgctgaat      3720
     cctgtcattg aaaatctaat cacggaacga accgttccga cgaaaagaca agtactacgc      3780
     actgtaatgt cactatttga tcccctcggt ttaataacgc atttcgtagt acaaggtaaa      3840
     attctcatgc aggatatttg gcgatcggga acagattggg atgaaccgat agcagcgaat      3900
     cttcaagacc tgtggaacaa atggagccga tctttggctt atttgaatag tgtgcaagtt      3960
     ccacgatgtt ttttcagtaa tgcgagccga aatgcgctag agaacacaca aattcacgtt      4020
     tttgtggatg cgagtgcaga ggcatatgct tgtgttgcgt atttaaggat cattgatcgt      4080
     ggwcttccac gatgtgcact agtggctgga aagtcaaagg tagcgcctct taaaccactt      4140
     tccatccctc gtctagagct acaggcagct ttgatcggta gtcgactgat ggataatatc      4200
     tgtaaaagtt tgaatatccc tcttcataaa cgatttcttt ggctcgattc ttcaaccgtt      4260
     ttggcttggc tgkgctcaga tagtcgacgt taccatccat tcgtagcata tcgggttggt      4320
     gagatwctca gcctgaccac tgtcgacgag tggagacatc tacaatcamg atacaatgtg      4380
     gcagacgaag caacaaaatg gggatctggc cctaaatttg attgtgagag cagatggttt      4440
     agtggaccat ccttcttgaa gcaaccggag gagtcctggc cagtgcagaa gaattataca      4500
     gcacccgtca cagaggaact tcgtgccgtc tacatgaatc atcatgttgt ttctcaaccg      4560
     tttgttgatg ttgttcgctt ctccacgtgg caaagattac ttcgkgcaac tgcgttcgcg      4620
     ttgagagctg tsaaaaggtt taaagggcaa cagttaccac cgtggttatc aagcgaagag      4680
     tttcgtaatg cggagaatat tttatggaaa caaacacaaa tggagagcta cccagatgag      4740
     tatgtaacat tataccacaa tagcaaaaat cctgagcagc tgaagatgtt ggacaaatca      4800
     agtccattgt ggaagcagtc mccttttctc gacagcgaag gcattattcg gatggacagc      4860
     agaataaaat cggcaccaaa tattcgtgac caaactaggt ttccaattat cctaccaaaa      4920
     gatcactatg taacacagct tcttgttgat agttatcatc gtcaattcct ccatgcgaat      4980
     aacgaaactg tgctgaatga aatgagacag cgtttctgta tcccggctct acgaaacttg      5040
     attaagcgga caaccagaag ttgccaaaaa tgtcgcatag ttaaggcagc tccacatcct      5100
     cctctcatgt ctccacttcc tgcggttcgt ttgacgtcat tcatccgacc ctttaccaat      5160
     actggtatcg actatttcgg tcctcttatg gtgaagcaag gtcgaagcat tgtcaaacgc      5220
     tgggtcgtgt tatttacatg cttatcaata agggcgatcc atttagaggt agcccatggc      5280
     ctgaccaccc aatcatgtst gatggccatt cgaagatttg tggcacgtag aggggcacct      5340
     gaaactattt actcagacaa cggcacaaat tttgttggcg caaacaattt gttgaaagag      5400
     cagcttcaaa aaatcaacga acaatgttct gcgacattca caaatgctcg aactaattgg      5460
     gtatttaacc ctcctgctgc gccccacatg ggtggggcct gggaaagatt aattcgctca      5520
     gtaaaaacag cgatgtcagc gattagtgac caccctcacc accctagtga tgaggtgtta      5580
     gaaactgtca ctttggaggc ggaagcaatt gtaaattcaa gacctctgac acacgtgcca      5640
     ttagattcgg tggatgacga agctttaaca cccaaccact tccttctgta tggawcacga      5700
     ggaatagttc aaccacctgc taaactagac gaaagttatg caacgcttcg agatagctgg      5760
     aagctagcca agaatcttgt ggacgagttc tggagamgat ggattcgcga atacctgcca      5820
     gaactagcaa ggcgcacaaa atggcatcat cctgtaaggc ctttgaaaga aggtgattta      5880
     gtcatcgtgt tcgacgagtc caaacgaaat gggtgggaaa gaggtagaat agtccaggtc      5940
     atgagaagta aagatggtca ggtgcgtaaa gctatggtgc aaacagcaaa tggagtgtta      6000
     acamgagcgg ctgtgaagct ggcattgcta gatgtcggcg agttgggcgt ggcaaaggtt      6060
     gctgaatctc gaagtcacac gggagggggt a                                     6091
//
ID   BEL-676_AA-LTR repbase;    DNA;    INV; 604 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-676_AA-I;
KW   BEL-676_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-604
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-604
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 271-271 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 604 BP; 196 A; 96 C; 123 G; 189 T; 0 other;
     tgttgccgac ccactgtgcg acaactgata acgatagtgt gagtgtcgag atcggtttgt        60
     ttgacgttca ccatcccacg aaagataaag tcatctgtca gaaaggagca taaagatata       120
     acaacgtgta gtcgaactgt tgagtggcaa atagatttat aaactttatt taactattat       180
     ttggagattc actattgaaa atctactgtt gaatattaga agaggtttga tactatatat       240
     attgcgtaaa atagttaaat tcaatgattt attgttcatt cagggttgat tgctttcgac       300
     cgccgggttg ccgagaagat taggttatct aggtctgagg aaactataga ttaatcgtaa       360
     gttggaattg aatttcatcc tgaattattg cctataacgt acatgattat agatttgaat       420
     tttctgttgg gaattgatca tcataaaatc taccgggcaa ggaaagcgta ctgaaatgta       480
     agaaaagcct aactatataa tcatactatg ttgctaatgg aaatcaataa acttctagct       540
     ttaagctgcg ctacagacaa gctgctaaaa ggcgttatac ctgtcctggt gacgatcccc       600
     aaca                                                                    604
//
ID   BEL-677_AA-I repbase;    DNA;    INV; 6169 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-677_;
KW   BEL-677_AA-I; BEL-677_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6169
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6169
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..6167
FT                 /product="BEL-677_AA-I_1p"
FT                 /translation="MASNTDLQNCIACNKPDREENLVACDACKDRYHFSCA
FT                 SVDDGIRDRCWSCSKCASAIVVDDVSKSGKSSKSGQSNRSIRIQLQLMKIE
FT                 EERKAEEKLIMERQQLEKERQEKVLLEKAAMEKKFRDEKYALLIAEASEDD
FT                 DESIKSRRSRVSSKDKVNRWIMDHAGMLADRSGQTDQAKKREGLNEPPAKS
FT                 TDKGVNGAKNLATPLTSLGDKAGKSQGAVPKEPVSLKQATNTSTPNQKNHM
FT                 GPPESFWQMQNVPIQPKSKIAVSHPETQSRQPNLKLVCNHPQQSEHHPVSQ
FT                 ATPCLVSQSDQQQLQQTTAWPPNKPSVLFSTIRQDGPPYRSTIPYPPIRNP
FT                 ISDPQNAEYAPGEQQTNPQPGFHHSEINRNPLLGTQPFQPDQSQVVWGQFQ
FT                 QQLAARQVVPKELPVFTGNPEDWPLFVSSYRNSTAMCGYSDAENLMRLQRC
FT                 LKGSALEAVRSNLLLPSSVPQVMATLETLFGSPDRLLQTMLNKVRNVPAPK
FT                 AERLETLVNFGITVQNLVGHLKGANQQAHLMNPSLLSELVEKLPANIRLDW
FT                 ALHKQRAGFVDLGSFSDYMMAITSAASDVKQFSDQDVHRANRSDRQRPKEK
FT                 AFMNTHSLPDVRKSGTVGGKLVDDKVRPCYVCQSLKHRIRDCPRFKTLTVG
FT                 ERWKLVSTQQLCKICLVSHGKWSCKSNKVCEVGGCSKGHNTLLHPGQPEEP
FT                 SSSRASAPAVVSVHRQLQSTILFRIIPVTLYGKETQISTFAFLDEGSQLTL
FT                 MDADIADQLNIVGEVRPLCLTWTANIKRREAASQQVSLQISGSSSDTKFKL
FT                 DDVRTVEGLALPTQNLQYSELVRQYSYLEGLPIKDYEQAVPRILIGMDNIH
FT                 LSLSLRRRERGAREPVATKTKLGWTVFGCVGDPANVNVSPSFHICECMELQ
FT                 GVHELVKNFFSEESMGITAQRTLEGNEDRRAREILEKTTVQREDGHFETGL
FT                 LWRTDDVQFPPSYVMAQRRLSCLHRRLKSNPELLSKLETQITDYQGKGYAH
FT                 KASKEEMQKFNSKRTWFLPLGVVLNPRKPGKVRMIWDAAAKVNGISFNGMM
FT                 LKGPDLLTPLPKVLFQFRQRQIAVVGDIREMYHQFFIREEDRSAQCFLWSA
FT                 NPSQPPEIFIMDAATFGSTCSPCQAQFIKNMNAKNWASEFPEAALAMVENH
FT                 YVDDYLDSRDTVEEMVKLATDVRTVHAKAGFRNWLSNSGQVLAHLGEQDIT
FT                 QRKDFVSDKTSPIERVLGMTWLPDEDIFTFRVTLSDSLQRLVTGESTPSKR
FT                 KILQFIMSLYDPIGLISHVLIHGKIIIQDLWRCGVGWDDPIPEEVSETWRK
FT                 FLTIFSELNQVCVPRCYFPDYEKNIYETLELHMFVDASLSAMACVAFFRVI
FT                 DCGQARCSLVASKAKVAPLKPLSIPRLELQAAVMGSRLMKSIVDSHSVKIK
FT                 KRFIWTDSNTVLLWIRSDARKYRQYVAVRVGEILDETKMQEWRYVPSTLNV
FT                 ADDATKWKGNPELRPANRWFTGPDFLYEQESHWPQQKVALIEIPDELRVVH
FT                 VHREDVSVSFIEFNRFSKWERILRTAAYVFLFIRCCRNSSKSSNIGGELDR
FT                 EDFKNAEYALWQTAQKDEYREELRQIRAGNESRISKNSVLRKLSPFIAKGG
FT                 ELRMGGRIGASPFATYDAKYPVILPKGHRITTLIIDRYHRMYGHQNGETVV
FT                 NEIRQKYHISNLRTEVRKVGKLCQWCKTYKAEPKIPRMAPLPEERVTPFVR
FT                 PFSKIGIDYFGPYQIKIGRSLVKRWVVLYTCLVIRAVHLEIAASLSTESCM
FT                 LTLRRFIARRGAPEQIFTDNGTNFVGTERELAKQLQNVNEKLAESFTNEST
FT                 KWNFIPPASPHMGGAWERMVRAVKAAMNSINHPRSPTEEVFQTVLCEAESM
FT                 VNSRPLTYIPLENSDQEALTPNHFILLSSNGVKQTEKLPTEIKAVHRSDWK
FT                 LCQHILDQFWSRWVREYLPTITRRTKWFAETTPIEVGDIVFIVDGSVRNRW
FT                 VRGMVTEVFPGKDGRVRQAVVRTCTGTFRRSVSKLAVIDIRSDSKAEEPRQ
FT                 LYEGR"
XX
SQ   Sequence 6169 BP; 1808 A; 1362 C; 1579 G; 1420 T; 0 other;
     atcttttaag aattctgacc aatacgacgg tcgaacacgg acttcgagaa gaatcatcgg        60
     agagatagtt tgcgatggca tcaaatacgg atctgcagaa ttgcattgcc tgtaataaac       120
     cggatcggga agaaaacttg gtagcctgcg atgcctgtaa ggatcggtac catttttcat       180
     gcgcttcggt tgacgacggt atccgggata gatgttggtc atgcagcaaa tgtgcctctg       240
     ccatagtcgt tgatgacgtg tcaaaatccg gtaagtccag taaatccggt caaagcaatc       300
     ggtcgataag gattcagctt caattgatga agattgagga ggagcgtaag gccgaagaaa       360
     agctgataat ggagcgacag cagttagaaa aagagcgcca agaaaaggtc ttgcttgaga       420
     aagcagccat ggagaaaaaa ttccgagatg agaaatacgc tctgctgatt gcagaggcga       480
     gcgaagatga cgacgagagc atcaagagtc gtaggagtcg agtgagcagc aaagacaaag       540
     tcaataggtg gataatggac cacgctggca tgctggccga tcgcagcgga caaaccgatc       600
     aagcaaagaa aagagaaggc ttaaatgaac caccagccaa atcaactgac aagggtgtaa       660
     atggagcgaa gaatttggca acaccactaa catcgttggg cgataaagct ggtaaatctc       720
     aaggcgccgt accgaaagaa ccggtgtccc tgaagcaggc cacgaataca tcgactccga       780
     accagaaaaa ccatatggga ccaccggaat cattctggca aatgcagaat gttcctatac       840
     aaccgaaaag taaaatagcc gtatcgcacc cagagacaca atcgcgtcaa ccgaatttga       900
     agctagtttg caaccatcct cagcaatcgg agcatcatcc ggtttctcaa gcgacgccat       960
     gcttggtttc ccaatcggat cagcaacaat tgcaacaaac gacagcatgg cctccaaata      1020
     agccatcagt tttgttttcg acaatccgtc aagatggacc accttatcgg agtacgatcc      1080
     cgtatccacc aatccggaat ccgatatctg acccacagaa tgctgaatat gcaccagggg      1140
     aacagcaaac taatccgcag cccgggttcc accactctga gataaatcgt aacccgctcc      1200
     tcggtacgca accgtttcaa cccgatcaat cccaagttgt atggggccag ttccagcagc      1260
     agctggcggc tagacaagtg gtcccgaaag agcttccagt gttcactggg aatcctgagg      1320
     actggccgct attcgtaagt agctatcgga actcaacagc gatgtgtggt tactcagatg      1380
     ctgaaaacct catgaggctg caaagatgcc tcaaaggcag tgcattagaa gccgtccgca      1440
     gtaatttgtt gttgccttcg tcggttcctc aagtaatggc aacattagag acgcttttcg      1500
     ggagccctga ccgactactg cagaccatgt tgaacaaggt gcggaatgtg ccagcaccga      1560
     aggcagaacg gctggaaaca ttggtcaact tcggcatcac cgtgcaaaat cttgtaggac      1620
     atctgaaagg agcaaaccag caggcccatc tgatgaaccc gtcactgctg agcgagctgg      1680
     tcgaaaagct accggcaaac atccgtctag actgggcact ccacaagcag cgtgccggat      1740
     tcgtcgattt aggatccttc agcgactata tgatggctat aacttcagca gccagcgatg      1800
     ttaagcagtt cagcgaccag gacgtccacc gagccaaccg aagcgacagg cagcgtccca      1860
     aggagaaggc attcatgaac acgcattcct taccggatgt tcgtaagtca gggaccgtcg      1920
     gaggtaagct agtagacgat aaagtcaggc cgtgctatgt ttgtcaaagc ttgaagcaca      1980
     gaattaggga ctgtcctaga tttaagactt taactgtcgg ggaacgttgg aaattagtca      2040
     gtacgcaaca actttgtaaa atttgtttgg tgtcgcacgg caagtggtct tgtaaatcca      2100
     acaaagtgtg tgaagttggg ggttgttcta aagggcataa tacgttgtta catccgggtc      2160
     agcctgagga gccttcaagt tccagagcca gtgcaccggc ggtcgtctct gtgcatcgcc      2220
     aactacaaag tacgatccta tttcgcatta tcccggtcac cctttatggg aaggaaacgc      2280
     agatatcaac tttcgcattt ctcgatgagg gttcgcaatt gaccctgatg gatgccgaca      2340
     tcgcagatca gctgaacatc gtcggagaag tacgtccgct gtgccttacc tggacggcaa      2400
     acataaagcg acgagaagca gcatcacagc aagttagctt gcaaatctct ggttcatcaa      2460
     gtgatacgaa gttcaagttg gacgatgttc gcactgtgga aggtttggct ctaccgacgc      2520
     agaatcttca gtacagcgag ttggtaagac agtattcgta tttggaaggg cttccgatca      2580
     aggactacga gcaagcggtt ccaagaattt tgatagggat ggacaacatt catctctctc      2640
     tttccttgcg aagaagggag cgtggtgcac gagaacctgt cgctacgaaa accaaattgg      2700
     gctggactgt gttcggctgc gtaggagatc cagcgaatgt gaatgtatcg ccatcgttcc      2760
     acatttgtga atgcatggaa ctacaaggag tccatgagtt agtaaaaaat ttcttttccg      2820
     aagaaagtat gggtattaca gctcaacgta cactcgaggg aaatgaagac cgccgtgcaa      2880
     gagagatact tgaaaagacg acagttcaac gggaagatgg tcactttgag actgggttac      2940
     tgtggcgtac cgacgatgtg caattcccgc caagttacgt tatggctcag agaagattgt      3000
     cctgtctaca tcgtcgactg aagtccaatc cggaattgct ctcgaaattg gagacgcaaa      3060
     taacggatta ccagggaaaa ggatacgcac acaaggcgtc caaggaagag atgcaaaagt      3120
     tcaattcaaa acggacttgg ttcttaccgt taggggttgt gcttaacccg aggaaacccg      3180
     gaaaagtccg catgatttgg gacgccgctg cgaaagtgaa cggtatttcg ttcaacggca      3240
     tgatgctaaa aggaccggat ctattgaccc cgttgccgaa ggtattattt cagtttcgcc      3300
     agcgacagat agctgtagtc ggagacatac gcgaaatgta ccatcagttc ttcatccgtg      3360
     aagaagatcg ttcggcgcaa tgtttcctgt ggagtgcaaa tccatctcaa ccaccggaga      3420
     tatttatcat ggatgctgct acctttggct ctacgtgttc tccgtgtcag gcacagttca      3480
     ttaagaacat gaacgccaaa aattgggcct cagaatttcc ggaagcagca ttagcgatgg      3540
     tagaaaacca ctatgtggat gactacctag atagccgaga tacggtggag gaaatggtga      3600
     aactggcgac agatgtgcga acggtgcacg caaaggccgg attcaggaat tggctatcaa      3660
     attcggggca agtgttagcg catctaggag agcaagacat aactcaacgg aaggattttg      3720
     tcagcgataa gactagccct attgagcgtg tgttggggat gacttggctt cctgatgagg      3780
     acatattcac cttcagagta acattatcgg atagtctgca gcgacttgta acaggagagt      3840
     ctactccttc gaagaggaag atcttgcaat tcattatgag cctatatgat ccaatagggt      3900
     taatctcgca cgtcctcata catgggaaga tcatcattca agatctgtgg cgatgtggag      3960
     tcggatggga cgatcctatc cccgaagaag tcagcgagac ttggagaaag ttcttaacta      4020
     ttttcagtga actgaaccaa gtttgcgtac cacgatgcta ttttccagat tatgagaaaa      4080
     acatctacga aacattggag ctgcatatgt ttgtagacgc aagtttatct gctatggcct      4140
     gtgtagcctt tttccgtgta attgattgtg ggcaagcacg gtgttcattg gtagcatcga      4200
     aggctaaggt agcacctctg aagccgctct cgattccgcg actggaactc caagcggctg      4260
     taatgggaag ccgcctaatg aagtctatcg tcgacagcca ttcagttaaa ataaaaaaac      4320
     gattcatctg gaccgattct aacactgtct tgctgtggat acgttcggat gccagaaaat      4380
     acagacagta cgttgcagta cgagtaggtg aaattctcga tgaaaccaag atgcaggaat      4440
     ggagatacgt accgtcaacg ctaaatgtag ccgacgatgc gactaaatgg aaaggaaatc      4500
     cagaattacg acctgctaac cgatggttta cgggaccaga tttcttgtat gaacaagaga      4560
     gtcattggcc tcaacagaag gtagctttaa ttgaaatccc ggacgagttg cgcgtggttc      4620
     atgttcatcg agaagatgtc agtgtcagct tcatcgaatt caaccgattc tctaaatggg      4680
     aacgcatcct caggacagct gcgtacgtgt ttctgtttat tcgatgttgt cgcaactctt      4740
     cgaaatcatc aaatattgga ggagagttgg atcgagagga tttcaagaat gcagaatacg      4800
     ctctgtggca aactgcccaa aaggacgagt acagagaaga actgaggcag atcagagcag      4860
     ggaacgaaag cagaatttcg aagaacagtg tcttaaggaa actatcaccg ttcatcgcca      4920
     agggtggtga gcttcgcatg ggaggtcgta ttggtgcttc tccattcgca acgtacgatg      4980
     caaaataccc agtgattctt ccaaaaggac atcgaattac cacacttatt atcgacagat      5040
     accacagaat gtacggacat caaaatggag aaactgtggt caacgagatc aggcaaaaat      5100
     accacatttc gaacttgcgc acagaagtcc gcaaggtcgg caagctttgt caatggtgta      5160
     aaacttacaa agctgaaccg aaaattccac ggatggcacc actgcccgaa gagcgcgtta      5220
     caccatttgt tcgaccgttc tcgaagattg gcatcgatta tttcggtcca taccaaatca      5280
     aaatcggtag aagtttggtg aaaaggtggg tcgtgctgta tacctgtctt gtaattagag      5340
     ctgtacactt ggagattgct gcatctctgt caacagagtc gtgcatgctg actctccgta      5400
     ggttcatagc aagacgtggc gcacctgagc agattttcac cgacaacgga actaattttg      5460
     tcggtaccga acgggagttg gcgaagcaat tgcaaaatgt gaacgagaag ttggcggaga      5520
     gtttcacaaa cgaaagcact aagtggaatt ttattccacc tgcctctccg cacatgggtg      5580
     gtgcttggga gaggatggtc agggcggtaa aggcggccat gaattctatc aaccatccaa      5640
     gatctccaac ggaagaagta ttccagaccg ttttatgcga ggccgaatcc atggtaaact      5700
     ctagaccttt aacctacata ccgttggaaa attcggatca ggaggctctc actccgaacc      5760
     atttcattct tctcagctca aatggagtga aacaaactga gaagttaccg acggagatta      5820
     aagcagttca tcgaagtgac tggaaacttt gtcaacacat cctggatcag ttctggagca      5880
     gatgggtccg tgagtatctg ccaactatca caagacggac taaatggttc gcggaaacaa      5940
     caccgataga agtaggtgat atcgtcttca tcgtggacgg aagtgttaga aatcgctggg      6000
     ttcgcggaat ggtaacagaa gtgttcccag gaaaagatgg ccgagtcaga caagcagtag      6060
     ttcggacatg taccggaact tttcgtagat ctgtttcaaa gctagcggtt atagatattc      6120
     gttcagacag taaagctgag gaaccgaggc agctttacga ggggaggaa                  6169
//
ID   BEL-677_AA-LTR repbase;    DNA;    INV; 675 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-677_AA-I;
KW   BEL-677_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-675
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-675
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 289-289 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 675 BP; 225 A; 99 C; 137 G; 214 T; 0 other;
     tgttagcagg agcgtagcac acattgctaa acctgctacg actgtcgcac agaaacgatc        60
     actcggtgtc gataaggttg tcgaattgaa agatgacatg aatgtgaaga acgataggta       120
     actgtcagag ggagatgagt cgacagaatg ccgtgtaggt agtatttatc tagaaccatg       180
     ccatgtatga agttttttgt tggataaatt gagttttcgc aattacaaat aatattttat       240
     atctatcggt atttataatc aaaagcaatt aatttacgtt gtaagtgcct aaaaagtcag       300
     tataatgaat tactatctaa aatattaaac ctacgtgaac tttcaggtta aagaacttaa       360
     agctattgaa cttattgatt aaagtacaca aagcgactgg aaatagttgt ctaattgtga       420
     gtaatgtttc tattagctat tacaccattc cattaacttt tatatttagt ccacagggct       480
     ttggaatagc tatttgttga ctcggagtag ttaaggctga aaagggttac cagaattgta       540
     agatgttggt atgaaaatag attatgtgga catttgttaa ccgattatac attttagctt       600
     aaaagcatcg tcaataaact acattggaca gctaaaagat ctgcgaatcc ctgtttctgc       660
     ttcgaggtgg caaca                                                        675
//
ID   BEL-678_AA-I repbase;    DNA;    INV; 6783 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-678_;
KW   BEL-678_AA-I; BEL-678_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6783
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6783
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 305-305 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..6782
FT                 /product="BEL-678_AA-I_1p"
FT                 /translation="MSNIDRTCSLCKELDSPGSMIECAKCHKRYHHSCAGG
FT                 EDGISGTSSPFYCVLCVPRGPVPSVSMSSTASTTASAREARLQLEMLRLEE
FT                 EKRVEEMLMAQRAEAEKQLQERELRFERERSEKAIADKIELEKVFITRKYD
FT                 LLLAQVDGSNDGRSVRSRRSSARSIEKVQSWMENHPVTLSSNSGERIPTGI
FT                 TSQEGGSSNLRLIPRSSTSTSGLPNRPSVAESSFDASSGAAVLPSSSLGVI
FT                 SEILPLSTTQSGPTTRAKPLLPSCQSTPFAPPTATSQPAVNDVAYDDQLNR
FT                 TYSVQLDKTVDTGKGLEAEQSMYMRSAPVSTPSRPPRLVETNSNAGSSSHN
FT                 IIPHSTIPNVNPKEQCFDISSFCVARALPIVDDHVSNQLRVKKHTITVPSG
FT                 TITHQTLLKPSHTDNAPLLSVSSHSRPIFSLQSGYSAPLFPPASNIPSSAS
FT                 DTIYAISTSAVPIHAAGVPVTVNSRVSDPAVVPNRFNCGTNASEPVMNSGV
FT                 DNLCQPSNMPPASSGSFHVPPAAGLASIHVPAMHNAASVNIPAAINAMPGN
FT                 PSQFFYNPAFQQEVGGVSINPVPSSGSGAQTITFNSPTAQQLAARHVVPKE
FT                 LPHFSGNPADWPLFWSSYDTSTRMCGYSDAENLMRLQRCLKGDARKSVNSF
FT                 LLHPLNVPEIIRTLNTLYGRPEAIIGTLLAEVRAAPAPRSEKLESIINFGL
FT                 VVRNLCAHLVATGQEMHLANPMLISELVDRLPANIKLDWALYTQRVARADL
FT                 RTFSDYMNVIVDAASRVTPLVDKPDRTKGKAVVNAHAFSDRDNQSQANHRS
FT                 TETTANFNKVSTGGGERPCMVCKINGHKPKDCSTFKSKSLENRWKAAQELH
FT                 LCKRCLYPHGKWPCKASLCGTDGCEQRHHRLLHPGNPTERRQPAASSNAVS
FT                 GVVNVHQNSHSKVLFRIIPVELHANGRSVQTYAFLDGGSDSTLVEKSLVEQ
FT                 LGVQGPVSPLCMQWTNGIKRLEEDSRKVYIKISGVGQRKQFQLRGVQTVDS
FT                 LDLPRQSVRFKELEDRFAYLRGLPVMSYDDVIPGILIGLDNTSVKNSFKQR
FT                 EGKADEPVAAKTRLGWVVYGRTGCKDQALSHRIFHVCTRAHDDDLDESIKQ
FT                 FFSTESVGVSVAKAVESADDQRAREILQATTVRTPAGRYQTGLLWKYDEFE
FT                 FPNSRPMAERRLKCLERRLSKSPELYAKMRQQVAEYQTKGYAHVATLRELE
FT                 ESNPKRVWYLPLGIVVNPRKPNKLRMVWDAAAVVQGVSFNSVLLTGPDLLV
FT                 PLQAVLSRYRQKKIAISADIMEMFHQVEIRPEDRQAQRFLWRNNPGDPIQV
FT                 FVMDVAIFGSTCSPCSTQFAKNLNADEHSAEFPEAAVAIKENHYVDDYLDS
FT                 VDSIDEAVQLATDVKTVHSRGGFQIRHWMSNSPEVLRRIGEQNSLTVKSFV
FT                 MDKDSQQERILGMVWLPNEDMFSYKTSFRRDLERLFEASVVPTKREVLRLV
FT                 MSLFDPLGLIASYIIEGKVIIQEIWRSKVGWDEQIPVKLLKRWEQWLDILR
FT                 ALDKVKIPRCYFPEYSKEAYXSLELHVFVDASESAFAAAAYFRVVDNGRIR
FT                 CCLVSAKTKVAPLQSIGIPRLELQAAMIGTRLMKTITDNHTISIKRRVMWS
FT                 DSRTVLTWLRSDHRRYRXFVAFRITEILEETNVVDWRWVPTKLNVADEATK
FT                 WGKGPNYHENCRWFNGPAFLYEDESKWPEEDTTQEEFADEELRNVRIHVQR
FT                 TAELILDFQRFSKWERLVRTVAYVRRFYRNCQHKRTGSTTITGVLSREELE
FT                 AAQNLIWKLVQEEAFPAEFAVLRSNQQVPSEQRKAVEKSSCVYKLAPFLDE
FT                 EGVMRKDGRIKASPYVPFETKFPIIVPKQHHVSHLLVDWYHRQYGHANGET
FT                 VVNEIRQKYVIPELRVAVRKIAKRCTWCSVYRAVPQVPKMGPLPLARLTPY
FT                 VRAFTFVGIDYFGPLTVRVGRASVKRWVALFTCLTTRAIHLEVAASLSTDS
FT                 CKQAIRRFIARRGAPHEMYSDQGTNFQGVSSELARQIRAINGALADTITNH
FT                 RTQWKFNPPHAPHMGGVWERLVRSVKRGLSCLLTDRNPNDETLATAVTEVE
FT                 SMVNSRPLTYLPLESEETEALTPNHFLLLSSSGVVQPPTKMTDEAEALHTN
FT                 WGMIKVMLDNFWKRWLREYLPVMSPQSKWFGEVRNVQVGDLVMLANEKDRN
FT                 SWTRGRVLQVYPGRDGRVRRVDVQTTMGVHQRPVSKLAILNVAGVPGIAEG
FT                 SGSNTGGG"
XX
SQ   Sequence 6783 BP; 1820 A; 1684 C; 1796 G; 1481 T; 2 other;
     aacttcaaga gtttttaatt actctacgat cgattggacg aaaacatcca gcacgggaca        60
     atcgatagat gtcgaatatc gatcgcactt gctctctctg caaagagcta gacagcccgg       120
     gctcaatgat cgaatgtgct aaatgccaca aacggtacca ccactcatgc gccggtgggg       180
     aagatggaat ttcgggcact tctagtccat tttactgcgt attgtgcgtc ccccgcggtc       240
     cagtcccctc cgtttctatg tcatcgacgg cttcaaccac agccagcgcg cgagaggcaa       300
     gacttcagtt ggaaatgctg cggttggagg aggagaaacg tgtggaagaa atgctcatgg       360
     cacaacgagc agaagcggaa aagcagctac aggaacgaga gctgcggttc gaaagggaaa       420
     ggagcgaaaa agcgatcgcc gacaagatcg aattggagaa ggtgttcatc acgaggaaat       480
     acgatttgct gcttgcacag gtagacggga gtaacgacgg caggagtgta cggagtcgac       540
     ggagcagcgc cagaagcatc gaaaaggtgc agagttggat ggagaaccac ccagtgaccc       600
     tgagttccaa ttctggggaa cgcatcccca ctggaatcac gtcacaggag ggtggctcat       660
     caaatttgcg gctgattcca aggtcatcca ccagcacatc tgggctgcca aatcgcccat       720
     cagtagcaga aagtagtttc gatgcgtcca gtggtgcagc agttctacct tcaagtagtt       780
     tgggagtgat aagtgagatc ctgccgttat ctactaccca atcaggtccg acaacgagag       840
     ctaaaccgtt gcttccatcg tgccagtcta cccccttcgc ccctccaaca gctacaagcc       900
     agcccgcggt gaacgacgtc gcctatgatg atcagctcaa ccgaacgtat tcggtgcagt       960
     tggacaaaac cgtggacaca ggcaagggac tggaggccga acagagtatg tatatgcgtt      1020
     cggctccggt aagtacaccc agtagaccac ctaggctagt agaaaccaat tcaaatgcag      1080
     gcagtagttc acataatata attcctcaca gtacaatacc aaacgtaaat cccaaagagc      1140
     aatgttttga tataagctct ttctgcgtag ctagggcctt accaatagta gacgatcatg      1200
     tgtcgaacca gcttagggta aagaaacaca ctattacagt cccatctggt acaatcacac      1260
     accaaacgct ccttaaacca tcacacactg ataatgctcc attgctgagt gtctcgagcc      1320
     attcgcgtcc aatattctcg ctacaatcgg gttactctgc tccccttttc cctcccgcgt      1380
     caaacatacc atcgtccgcg agtgatacga tctatgcgat ctctacaagc gcagtgccca      1440
     ttcatgcggc cggtgttcca gtgacagtga attcgagagt gagtgatcct gcagtggttc      1500
     ccaatcgttt caattgcgga acgaacgcat ctgaaccagt gatgaattcg ggagtggata      1560
     acctatgcca gccgtctaat atgcctccag cgagttcggg atcgtttcac gtccctccag      1620
     cggccggttt ggcgtcaata cacgttccag ctatgcacaa cgcggcgtca gtcaacatcc      1680
     cggcggcgat caatgcgatg ccaggaaatc catcacaatt tttttacaat cctgcgttcc      1740
     agcaggaggt gggaggcgtt tcaatcaacc cagtgccgtc ttcagggtct ggcgctcaaa      1800
     cgatcacctt taactctcca accgcgcagc aactggcagc tcgtcacgtt gtcccgaagg      1860
     aacttcctca tttttcggga aaccccgcag actggccgct tttttggagt agctacgata      1920
     cgtctacgag aatgtgcgga tacagtgatg cggaaaacct catgcgcctt caacgctgcc      1980
     tgaaagggga tgctaggaaa tctgtcaaca gcttcctgct tcatccgttg aacgttccgg      2040
     aaattattcg cacgctgaat actctctacg gtcggcctga agccatcatt ggaactctgc      2100
     tggctgaagt acgagctgcg ccagccccac ggtcagagaa gttggagagc atcatcaatt      2160
     tcggattggt tgttcgcaat ctctgtgctc acttggtcgc taccggtcaa gagatgcact      2220
     tagccaaccc gatgttaatc agcgagttgg tggacagact tccagccaac atcaaattgg      2280
     attgggcgct gtacacgcaa cgagtggcac gagcggatct gagaacattc tcggattaca      2340
     tgaacgtcat cgtcgacgca gcgagtcgtg taacgccgct agttgacaaa ccggatagaa      2400
     cgaaagggaa agcggtcgta aatgcccatg cattcagcga tcgtgacaac cagagccaag      2460
     caaaccacag gtcgacggag acaacagcga atttcaacaa agtttccact ggtggcggtg      2520
     aacggccttg catggtctgc aagatcaacg gtcacaagcc gaaggactgt tcaacgttca      2580
     aatccaaatc actggagaac cgatggaagg ctgcgcaaga gttacacctt tgcaaaaggt      2640
     gtctctaccc gcacggaaag tggccttgca aggcgtcgtt atgtggaacg gacggctgtg      2700
     aacaacggca tcatagactg cttcatcctg gcaatccaac agaaagacga cagcctgcgg      2760
     cgtcttctaa tgccgtatca ggagtagtca acgtgcacca aaactcccac agcaaggttc      2820
     tgttccgaat aatcccggtg gaactacacg caaacgggag atctgtccaa acgtatgcct      2880
     tcctcgatgg agggtccgac tcaacgttgg tggagaagtc gctggtcgaa cagctaggcg      2940
     tacagggacc tgtatcacca ctgtgtatgc agtggaccaa tgggatcaaa agattggaag      3000
     aagattcgag gaaggtgtac atcaagattt ccggtgtggg ccaacgtaag cagttccagt      3060
     tgagaggtgt gcagaccgtg gacagtttgg accttccgcg gcagtcagtt cgcttcaagg      3120
     aactagagga tcgtttcgct tacctacgag ggctacctgt tatgagctac gatgacgtca      3180
     ttcccggtat tttgatcggg cttgataata ccagtgtgaa aaactccttc aaacaacgcg      3240
     aaggcaaggc cgatgaacca gtagccgcca aaaccaggct aggatgggtt gtgtatggcc      3300
     gcactggatg caaggatcaa gcactgtcgc atcgaatatt ccacgtttgc acccgtgccc      3360
     acgacgacga tctggatgaa tcgatcaagc agttcttttc gacggaaagt gttggcgtgt      3420
     ctgtagcgaa agctgtggaa tcggcagatg atcaacgggc acgagaaata ctccaagcga      3480
     cgactgtacg aactcctgcc ggtagatacc aaacaggtct gctttggaag tacgacgaat      3540
     tcgaatttcc gaacagtcgt ccgatggctg aacggcgcct caaatgtctc gaacgccgtc      3600
     tgtccaaatc cccggagctt tacgcaaaga tgagacagca ggtagcagaa taccagacaa      3660
     aaggatacgc ccatgtagct acactacgag aactggagga atcaaaccct aaacgcgtct      3720
     ggtatctgcc gttgggtatt gtcgtaaacc cccggaaacc aaataaattg cggatggtct      3780
     gggatgctgc agccgtcgta caaggagtgt cattcaactc ggtcctactg acaggtccgg      3840
     atctattggt gccccttcaa gcggtgctca gtcgctacag acaaaagaaa attgccatta      3900
     gcgccgatat catggaaatg ttccaccagg tggagatcag gccagaggac cgacaagctc      3960
     agaggtttct atggcggaat aatccaggag atccaattca agttttcgtt atggatgtgg      4020
     ccatattcgg ttcgacttgc tcaccgtgct ctacgcagtt tgctaagaac ctcaatgcag      4080
     atgaacattc ggcggaattt ccagaggcag ctgtggcgat aaaagagaac cactacgtcg      4140
     acgattatct ggatagcgtc gacagcatcg acgaagcagt tcaactagcg acagacgtga      4200
     aaacggtaca cagtcgagga ggcttccaga taagacattg gatgtcaaac tctcccgaag      4260
     tactgaggcg catcggagaa caaaattcgc tcacagtgaa gagcttcgtg atggacaagg      4320
     acagccagca agaacgcatt ctaggtatgg tctggttacc caacgaggac atgttctcct      4380
     acaaaacaag cttccgccgc gacctggagc gcttgttcga agcttccgtc gttccgacaa      4440
     aacgtgaagt gttgagactg gtaatgagcc ttttcgaccc attagggctc atcgcatcct      4500
     atatcatcga aggaaaggtc atcatccagg agatatggag gtctaaagtc ggctgggatg      4560
     agcaaattcc tgtcaaacta cttaaacgct gggaacaatg gttggatata ctccgggcgc      4620
     tggacaaagt gaagatcccg cggtgttact tcccagaata cagcaaggaa gcctatgawt      4680
     ctctggagtt gcatgtcttc gtagacgcga gcgaaagcgc gtttgctgcc gccgcttatt      4740
     tcagagttgt ggacaacggg aggattcggt gctgcttggt tagtgcaaag accaaagtag      4800
     ctccattaca atcaatcggg attccgcgtc tggaactgca ggcagctatg attggaacgc      4860
     gactaatgaa gaccatcaca gacaaccaca ccatttctat caaacggagg gttatgtgga      4920
     gcgattcacg aaccgttctc acctggctcc gatccgacca taggagatat cggcakttcg      4980
     ttgcattccg gattacggag atcctcgagg agacgaacgt tgttgattgg agatgggtgc      5040
     cgactaagtt aaacgtggcg gacgaagcca caaaatgggg aaagggtccc aactaccacg      5100
     agaattgcag gtggtttaac ggtccagcat tcctttacga ggacgaatcg aagtggccag      5160
     aggaagacac tacacaagag gaatttgcgg acgaagagtt gcgaaatgtc cgtattcatg      5220
     tgcaacgaac ggctgaactt atcttggatt tccaacggtt ctctaaatgg gaaaggctcg      5280
     taagaacagt tgcgtatgta cgccgtttct ataggaattg tcaacacaaa aggactggct      5340
     caacgaccat tacgggagtc ctttcacgtg aagaactgga ggcagcgcag aatttgatct      5400
     ggaagctagt gcaagaggaa gccttcccag cagagtttgc agttctacga agcaaccagc      5460
     aagtgccttc ggagcaacgg aaagcggtgg aaaagagcag ctgtgtctac aagctggcgc      5520
     ctttccttga cgaggaagga gtaatgcgga aggacggtcg aatcaaagct tcgccttacg      5580
     ttccattcga gacgaaattc ccgatcatcg tacctaaaca gcatcacgtt tcacatctcc      5640
     tggtcgactg gtatcaccgg caatacggcc acgcaaacgg agaaaccgtg gtgaacgaaa      5700
     tccggcaaaa gtacgtcata ccggagcttc gggttgctgt aaggaagatt gcgaaacgct      5760
     gtacttggtg ttcggtgtat cgagctgtac cccaggtccc gaaaatgggt cctcttccgt      5820
     tggcgcgact tacaccgtac gtacgagcct tcacgttcgt tggcatagat tatttcggac      5880
     cacttactgt tcgcgtcgga cgggctagtg taaagcggtg ggtagcccta ttcacttgcc      5940
     tgactactag ggcaatacac ttggaagttg cggcgtcgct atctaccgac tcctgtaaac      6000
     aggcgatccg cagattcatc gcccgcagag gggcccctca tgagatgtac tccgatcagg      6060
     gaacgaattt tcaaggtgta agcagtgaac tggccaggca aatacgggcc atcaacggag      6120
     cgctggcaga tactatcacc aaccacagaa cacaatggaa gttcaatcca ccgcacgccc      6180
     ctcatatggg aggcgtttgg gagagacttg tgcgctccgt gaagcgcggt ctcagctgtc      6240
     tactaactga taggaatcca aacgacgaga ctttggcaac agcagttacg gaggtggaat      6300
     ctatggtcaa ttcgcgtccg ctgacctatc ttcctctgga gagtgaggag actgaagcct      6360
     tgacgcccaa tcattttctt ctcctaagct ctagcggcgt agttcaacca cctacgaaga      6420
     tgacggatga agctgaagcc ctgcatacca actggggaat gatcaaggta atgctcgaca      6480
     acttctggaa gcgttggctg agagagtatc ttccggttat gtcgccacaa tcaaaatggt      6540
     tcggagaggt gcggaatgtc caggtcggcg atctggtgat gttggcgaat gaaaaggata      6600
     ggaatagctg gacacgtgga cgagttctcc aagtctatcc aggcagggac ggacgagttc      6660
     gccgagtcga cgtgcagact accatgggag ttcatcaacg acctgtttct aagttggcta      6720
     tactgaacgt cgctggagtt ccaggtatag ctgaaggttc gggcagcaat acgggtgggg      6780
     gta                                                                    6783
//
ID   BEL-678_AA-LTR repbase;    DNA;    INV; 445 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-678_AA-I;
KW   BEL-678_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-445
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-445
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 272-272 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 445 BP; 171 A; 95 C; 61 G; 118 T; 0 other;
     tgtgcgcgac gtagcctatt gcgttcagta ccgccccatc cacatctgct ccaacggcat        60
     actaaatgtt gctgtcatct ctttgacact gtatttgaag cctatctcta acaaaacaac       120
     acaaaatttc aacacgagaa cgtgaactat ccaattattg ttaaaatctt attttccccc       180
     caaacacgtt aaaatagtaa gtataatgga ttaaaattga attccttaaa actaaaatgt       240
     actatctaca gaaatacaca aaacacagaa gaataaacag ttacagcaga cggaaaacga       300
     acgaagaaaa ctaaaaactg taagttaacc taaaataatt aaaacaatga aattaataaa       360
     cttttgttgt agcttgaagc ttactccgcc aaaaacgagt tagtctaaag atgttttcga       420
     aactccatcc gtccgttccg taaca                                             445
//
ID   BEL-679_AA-I repbase;    DNA;    INV; 6261 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-679_;
KW   BEL-679_AA-I; BEL-679_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6261
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6261
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 306-306 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..6258
FT                 /product="BEL-679_AA-I_1p"
FT                 /translation="MMVGHAKTCGLCAIGGTTGSMMGCDMCDDWFHPNCVG
FT                 ESETNIEPDKTWRCDRCGTDKEVREPTSAGSRKSGRSSTSSKARKQLLMKQ
FT                 LEEQRAMKLKQRAEEDEIRKRRAEEDEAYLQQKLNIILEEDDDEDNSSRLS
FT                 SRASRKKVLDWLSNDQSIGKTPITRPPIVDVDQKHATPVTTPGLQIQGTVV
FT                 TKSSMVVIPASTSTPNSKADEISQPVSHAIVPTQVPPTRTLINSTMLDIMR
FT                 PMYAFPVTRAGVLDYTAPPGHQASAAARPAVSAIPTGSNCAFGSIPSVVPL
FT                 TTHLASGLSLRSPPVGQTSIGLYANVPAIPPTTIFSADVASQLQQIPPPLD
FT                 QTAALQSRPTLVPQDPVPPGSALGSVTYQPHHISQPRVGDEQQQLELLYQS
FT                 VPTSAQLAARQVMPRELPVFSGDPQDWPLFSSSFHNTTTACGFTDAENLAR
FT                 LQRCLKGHALDSVKSRLLMPQSVPHVMETLRKLYGRPEVLIHTLMQRLRVV
FT                 PPPRAENLQSIISFGMAVRNLVDHMFVAKLLDHLRNPMLLHELVEKLPPQL
FT                 KMQWSWYKRMQTDVNLATFGEFMTELVDTASDVTLPSDTPLQQRLNKTGRD
FT                 NHKLYAHSETEGDPTVTTTGQFRRPPISESNRRACWYCSDESHEVADCPQF
FT                 MSLDLDGRWKVIRSKGLCRTCLIPHRRWPCRSLKECGIDGCRLHHHALLHT
FT                 PAASNVAADHRVALQTHHSTLNICLFRYVPVTLENDGKKVETFAFLDDGCQ
FT                 TTLMEAGLATELGIYGPTESLWLGWTGNISREEKGSQRVNVNISGRGMNNK
FT                 FKLSNVRTVQQLKLQGQTLNYDEIQKRYPHMRGLPLHSYVNATPRIIIGVE
FT                 HVQLLTTLKAREGRTNEPVAVKTRLGWCVYGMQTEGSGAFEQLHIHTEKNI
FT                 ENHELHELMKKFFEVDEAAVASPIESADDTRARNILERTTRRIEGGFETGL
FT                 LWKYDRPTFPDTYPLALHRLQSLEKRFNKDPELRERVVSLIHEYEKKGYAH
FT                 KITKEELESTESHRVWYLPLGVVRNPRKPEKIRLIWDAAARVRGLCFNDML
FT                 VKGPDMLTSLFDVLLRFRQRSIAICGDIREMFHQVRIIPGDKQSQRFLFRE
FT                 HQSEQPQIYVMDVATFGAKCSPCSSQAVKNKNAEEFAVEYPKAAEAIINAH
FT                 YVDDYLDSVDTVEEAVQLVADVKHVHKKGGFEIRNFSSNSAEVLQQLGETR
FT                 SLEKKSLSLDVSAYVERVLGMVWKPALDVFTFDTTLKDDLEQLLEQNTTPT
FT                 KRQVLRLVMSLFDPCGFIAHFTVHGKILMQHIWRSGTDWDEKIADQLQEMW
FT                 KDWTRLLKQLINVQVPRCFFGVGESRLPANIQLHLFVDASELAYACVAYLR
FT                 IVQAGTVRCTLVAAKTKVAPLKPLSIPRLELQAGVIGCRLLDTICGALDLS
FT                 IEARYIWTDSATVLAWIKSDSRRYHPFVAFRVGEILNSTNVDEWHYVPSKL
FT                 NVADDATKWGDGPDFSPNGRYYAGEHFLYLPRNKWPEQTKQKCITNEELRT
FT                 VFHLHRVIPSPLINVARFSNWNRLVRSTTYMLRSLKKMRGEKISGDLTSDE
FT                 LLLAENFLWRQVQLEVYPDEYCSLQYNKQHPNEIPKPIDKSSPLYQDSPFL
FT                 DDSGVIRMFSRIGAAPTTPYEAKYPIILPKDHRLTLLLVDSYHRRFVHINH
FT                 DTVLNEVRRRFRIPQLRRVIKRVASSCQRCKVQKATPRPPMMAPLPAFRLT
FT                 PNIRAFSYTGIDYFGPLMVKVGRSLAKRWIALFTCLTTRAVHLEVIHSLST
FT                 QSCVMAIRRFVARRGSPAAIYSDNGTSFKGASNLLTSQIQGIHQDCANTFT
FT                 NARTTWHFNPPSAPHMGGCWERMVRSIKVAMAGVAEYPHHPTDEVLETVVL
FT                 EAESIVNSRPLTYIPLDDTEQEALTPNHFLLYGVQGVVQPRSVCAIGGATL
FT                 RDSWKLTQCLVDHFWKRWVHEYLPTITRRTKWFRPVKPLALDDLVLVVDEN
FT                 KRNGWLRGRIIEVKRGHDGQVRSAVVRTKDGIFTRPAVKLALLDVRVHEQA
FT                 PEGDAGTTREG"
XX
SQ   Sequence 6261 BP; 1721 A; 1531 C; 1570 G; 1439 T; 0 other;
     aacttttaag attaactgtt caactgttca tcaaggaagt cctttgaagt aagtgatcct        60
     gcgtagtaag cagattagac ctgtgaagta agcagtagag cgcccatttc ataatctcca       120
     gagtacagta acttccttct tctgtggatg atggtgggac acgcaaagac ttgcggttta       180
     tgcgccatcg gtggaacgac aggctcgatg atggggtgcg atatgtgtga tgattggttt       240
     caccctaact gcgttggcga aagtgaaacc aatatcgaac cggacaagac ctggagatgc       300
     gatcgctgtg gtacggacaa ggaagttagg gagccgacaa gtgcaggaag ccgtaagtca       360
     ggtcgaagtt cgacaagcag taaagcacgt aagcaactat tgatgaaaca gctcgaggaa       420
     cagcgcgcca tgaagctgaa gcaacgtgcc gaggaggacg aaatccgtaa acgacgagct       480
     gaagaggacg aggcctatct tcagcagaag ctgaacatca tcttggagga agatgatgac       540
     gaagacaact cgagccgatt gagcagtcgc gccagccgta agaaggtctt ggattggcta       600
     agcaacgatc aatcaatcgg aaaaacaccc attactagac caccgatagt cgatgtcgac       660
     caaaagcacg cgactccagt aacgacacct ggattacaaa ttcaaggaac tgtggtcaca       720
     aagtctagta tggtggtcat acctgcatct acatcgacac cgaattcgaa agccgacgaa       780
     atttctcaac ccgtttctca tgcaatagtg cccacacaag tgcctcctac aagaacgcta       840
     atcaactcta caatgttaga tattatgagg cccatgtacg catttccggt gactcgagct       900
     ggtgttttgg attatacagc gccaccaggg catcaagcaa gcgcagctgc gcgacctgcc       960
     gtatcggcaa ttcctactgg gtcaaactgt gcattcgggt caatcccgtc ggtcgtgcca      1020
     ctaacgacac acctcgcctc tggtctatcg cttcggagtc cgcctgttgg tcaaacatcc      1080
     attggtttat atgcaaatgt tcctgcaatt cctccaacca cgatcttctc cgctgatgtg      1140
     gcatcgcagc tgcagcaaat tccgcctcca ttggaccaaa cagctgcatt acaatccagg      1200
     ccaacgttgg ttccgcaaga tcctgtgccc ccaggatcag cattaggctc agtaacatat      1260
     caaccgcatc acatttcgca gcctagagtt ggtgacgaac aacagcagtt ggaacttttg      1320
     tatcagtcag tgcccactag tgcacaatta gcagcgcgcc aagtaatgcc ccgggaattg      1380
     cccgtctttt ccggtgaccc acaggattgg ccactgtttt ccagctcgtt ccataatact      1440
     acgacagcgt gtgggtttac agatgctgag aatctagctc gactccaacg ttgcttaaaa      1500
     gggcacgcgc tagactcagt gaaaagtcgc ttgttgatgc cgcaatcagt gccccatgta      1560
     atggagactc tgagaaaatt atatggacgc ccggaggtct tgatccatac tctgatgcag      1620
     cggttgcgag tcgtcccacc tccgagagcc gagaacctcc agtcgatcat aagctttggg      1680
     atggctgtac gcaacttggt ggaccacatg ttcgtggcaa agctactaga tcaccttcga      1740
     aacccgatgc tgttacacga gttagtagaa aaactcccac cacaactgaa aatgcagtgg      1800
     tcatggtata aacgtatgca aactgatgtc aacttagcga cctttggtga attcatgacc      1860
     gaacttgttg atacagcatc ggatgtaacc cttccatcgg acacaccact tcagcagaga      1920
     ctgaacaaga cggggcgaga caaccataaa ctatatgccc actctgaaac tgaaggtgat      1980
     ccaactgtga caactactgg ccaattcaga cgtccaccaa tctcagaatc gaacagacga      2040
     gcttgttggt attgttccga cgagtcgcat gaggttgctg attgcccgca gtttatgtct      2100
     ctagatttag acggacgatg gaaagtgatt cgctctaagg gtctttgtag aacatgcctg      2160
     attccacatc gtagatggcc ctgtcgttca ttaaaagaat gcgggatcga cggatgtcgt      2220
     ctacaccacc atgctctact tcatacacca gcagcgtcta acgttgccgc cgaccaccgt      2280
     gttgctttgc agactcatca ctcgacgctg aacatttgcc tttttcgcta tgtgccagtg      2340
     acgcttgaga atgatggaaa gaaagtggaa acgtttgcat ttttggacga cgggtgccaa      2400
     actactctta tggaagctgg attggcaacg gagctaggca tctatggacc aactgaatct      2460
     ctctggctcg gatggaccgg caacatttcc cgggaggaaa agggttcaca gcgagtcaac      2520
     gtaaacattt ccggaagggg gatgaacaac aagtttaaat tgagcaatgt acggaccgtt      2580
     caacagctga aactgcaagg acagacgttg aattatgatg agatacagaa aaggtatcca      2640
     catatgcgag gactacctct acacagctac gtaaatgcga cacccaggat tattatcggt      2700
     gttgaacatg tgcagcttct aaccactctt aaagcgcgag aagggagaac gaacgaaccg      2760
     gtggccgtca agacacgatt aggctggtgt gtatatggca tgcaaacaga gggctctggg      2820
     gctttcgaac agctgcacat ccatacagaa aagaatatcg aaaatcatga gttgcatgag      2880
     ttgatgaaga agttttttga agtcgacgaa gccgcagtag cctcgccaat tgaatccgcg      2940
     gacgacaccc gagcccggaa cattttggaa cgtacaaccc gtagaataga aggaggattc      3000
     gagaccggct tactgtggaa gtacgatcgg ccgacattcc cagacactta tcccttggca      3060
     ctccacagac tccaatcgtt ggagaagcga ttcaacaaag atcctgagct gcgggaacga      3120
     gtggtatccc taatacatga gtatgaaaag aaggggtatg ctcacaaaat taccaaggaa      3180
     gaactagagt cgacagaatc ccatcgggtg tggtacttac ccctcggtgt ggtacgcaat      3240
     ccgagaaagc cggagaagat tcgcttaatt tgggacgccg cagcacgagt tcgtggtcta      3300
     tgctttaacg acatgctggt gaagggacca gacatgctaa cttcgctatt cgacgtcttg      3360
     ttaaggttta ggcaaaggtc cattgccata tgtggagaca ttcgggagat gttccaccaa      3420
     gttcggatca tccctggtga taaacaatcc cagaggtttc ttttccgcga acatcaatcc      3480
     gaacagccac agatttacgt catggatgtg gctactttcg gtgccaagtg ctccccctgt      3540
     tcatcgcaag ctgtgaagaa caagaatgct gaagaattcg cagtagaata ccccaaagca      3600
     gccgaggcta tcatcaatgc tcactacgtg gacgactatc ttgatagtgt agatactgtg      3660
     gaagaagccg tgcaactggt ggcagatgta aagcacgtcc ataaaaaagg cggcttcgag      3720
     atccgcaact tttcgtccaa ctcggcagaa gtgctgcagc aactaggaga aacacgaagt      3780
     ctggaaaaga agtcgttgag tctggatgta tcggcatacg tggaacgtgt gctaggcatg      3840
     gtctggaagc cggctctaga cgtgttcact ttcgacacga cattgaagga cgacctagag      3900
     caactcttgg agcaaaatac aacgcccacc aagcggcagg tactgcgatt ggtgatgtca      3960
     ctgtttgatc catgcggttt tatcgcccat ttcaccgtgc atggtaaaat acttatgcag      4020
     catatctgga gaagtgggac agactgggat gagaaaatag ctgaccagtt acaggaaatg      4080
     tggaaggact ggactcgtct gttgaagcag ttgatcaacg tccaagttcc aagatgtttc      4140
     ttcggagtag gtgagagtag acttcccgcc aatatccagc tccacctttt cgtagatgca      4200
     agcgaactcg catatgcgtg cgtggcctat ttgcggatcg tccaagccgg gaccgttcgt      4260
     tgcactctgg tagcagcaaa aaccaaagtg gcgcccctta aaccactctc tatccctcga      4320
     ttggagcttc aagctggcgt cataggctgt cgtctgttag acacaatctg tggcgcactg      4380
     gatctgtcga ttgaagcaag atacatttgg actgattcag ctacggtact tgcatggatc      4440
     aagtctgaca gtcgtcgata ccacccattt gtagcgtttc gcgtaggcga aatcctgaat      4500
     agcactaatg tcgatgagtg gcactatgta ccaagcaaac ttaacgtggc tgatgacgct      4560
     acgaagtggg gagatggccc agatttcagc ccgaatggcc gttattacgc aggtgaacat      4620
     tttttgtatc tgccaaggaa caagtggcct gagcaaacca aacagaagtg catcactaac      4680
     gaagagctcc gaacagtttt tcaccttcat cgtgtaattc catcaccact gataaatgtg      4740
     gcccgattct ccaactggaa ccgattggtg cgatcgacta catacatgct tcgttcgttg      4800
     aagaagatgc gtggagaaaa aatctcaggt gatttgacca gtgatgaact actactggcc      4860
     gagaacttcc tatggcgcca agttcagctt gaagtatacc cagacgagta ttgttcactc      4920
     cagtacaata aacagcatcc caacgaaata cccaagccaa tcgataagag cagcccactc      4980
     taccaggatt ctccgttttt ggacgattcc ggtgtgatta gaatgttcag caggattggg      5040
     gcggcaccca ctaccccata cgaagctaag tatcccatta tcctacctaa agatcaccgc      5100
     ttaacgttgc tcctcgtcga tagctatcac cgtcgattcg ttcatattaa tcatgacacc      5160
     gttctcaatg aggtgcgtcg ccggttcaga atcccacaac tacggcgcgt gatcaaacgt      5220
     gtcgccagtt cctgtcaacg atgtaaggtc cagaaagcta ctccccgtcc acctatgatg      5280
     gcaccgcttc ctgcatttcg actgacccct aacattcggg catttagtta caccggtatt      5340
     gactacttcg gtcctctcat ggtgaaggtg ggacgcagtt tggcaaaacg ctggatagcg      5400
     ctcttcacgt gtcttacgac acgtgcggtg cacttggaag tcatacacag tctgtcgacg      5460
     caatcctgcg tcatggcgat ccgtaggttc gtagcgcgca gagggtcacc agcagcaatc      5520
     tactccgata acggtactag cttcaagggg gctagtaacc tactgacaag ccaaattcaa      5580
     ggaatccacc aagactgcgc aaacactttc acaaatgcaa ggacaacctg gcacttcaac      5640
     ccaccatctg ctcctcatat gggtggatgc tgggagcgaa tggttcgctc aatcaaggtg      5700
     gcgatggcgg gagttgcaga gtatcctcat catccaacag acgaagtgtt agaaaccgtt      5760
     gtgctggagg cggaatccat tgtgaattca cgaccgctaa cctacattcc actggacgac      5820
     acggaacagg aagccttgac accaaatcat ttcctcctgt acggcgttca aggggtcgtt      5880
     cagccgagat cagtctgtgc aattggaggg gctacactac gtgatagctg gaaactaacg      5940
     cagtgtttag tagatcattt ctggaagcgc tgggtacatg agtatctacc aacaataacc      6000
     aggcgtacca agtggtttcg gccagtcaaa ccactggcac ttgatgattt ggtgttagtg      6060
     gtggacgaga ataaacggaa tgggtggctg agaggacgga tcatcgaggt gaagcgtgga      6120
     cacgacggac aagtacgcag cgcagtcgtg cgcaccaaag atggcatttt caccagacca      6180
     gcggttaagc tggcgctatt ggacgttcgt gtccatgagc aggctccaga gggagacgcc      6240
     ggaactacac gggagggaga a                                                6261
//
ID   BEL-679_AA-LTR repbase;    DNA;    INV; 720 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-679_AA-I;
KW   BEL-679_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-720
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-720
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 273-273 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 720 BP; 229 A; 145 C; 137 G; 209 T; 0 other;
     tgttgcatac cggtctctac aaccgaaacg taacgtgagt cccgaacgct cccctgcatg        60
     aaccatcagc agcaagacga gaacaatgga caatcgggga gagatagatg cgtgtgtata       120
     ctggtcagtt tagttcgcca ttagatattc ttcgatgcta tagaatcgct atcagaagcc       180
     aataatttgc attcctttag tgatctcttg cagtcggcgg gtaaaattgt aaactctgat       240
     cctctaatac caccgcttct aaattagtac cactgaattc taggatttga ccagtataca       300
     cgatttatta cggtagtaac ccaaattcgt aggcaaccca aaacaggcag tcgagcgcta       360
     tagaattgaa ttatcttttc cagtatatgt gtaagtaata acacaagttg ttaagcctaa       420
     atctgaagtg cttggctcaa aacaacttgg tgatgacaaa atttgttagt acgattgaat       480
     tatgcatttg cactctcttt gatcatgact aggtttgatt tgaaatcgta ttcgaaccaa       540
     ttaagcaaga ttaactcgcg gtttcacaga aagcggaagg aatacttaat gtaagtctgt       600
     aatattagtg taaccttcat acttcataat gaaattcaat aaatttcagc ttaaaagctg       660
     gagaacattc aacctgctaa aaggacagtt ttcttcccct ggaaacccgc atttcgaaca       720
//
ID   BEL-67_AA-I repbase;    DNA;    INV; 6741 BP.
XX
AC   AAGE02020328;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_AA_;
KW   BEL-67_AA-LTR; BEL-67_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6741
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020328; Positions   18925   25665.
XX
CC   Positions [5781-6350] - Integrase core
CC   'GGGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           762..6740
FT                 /product="BEL-67_AA-I_1p"
FT                 /translation="MNQLPSELMNMISPFSSTNLGPSTSAAPLLPTCQSTP
FT                 FVAPLAASQRNQPDDVDVTHENPQNRTYSVEIDPTNSTGNPLEVEQGLNVR
FT                 SGSAPVSTPNRHVRIVTDTNEGSRAYQGVVTSTLNSNANDQLYHLSSNVVA
FT                 SGSQTVDRVAPTQYRASNGTITLPSITKANQMPVRLLHTNSAPMLSVTSNQ
FT                 GPIFSLPMGSSAPPFPPLSNVQSFVGDPIGPTFSHTTGIPTTLYAGVSERT
FT                 VNAAPLIGNRYYTGTISSAPVVNSRLENLWQPTHLHPVAGSESVNPMGMNS
FT                 ASGVYPAAINATSVNPMQGFNNPPFQHAERTGAGHSGPSSSFDVQSFNNPT
FT                 AQQLAARHVVPKELPSFSGNPAEWPLFWSSYEMSTRICGYSESENLMRLQR
FT                 CLKGEARKAVNCFLLHPLNVPEILRTLSTLYGRPEAIIGTLLAEVRSTPAP
FT                 RSEKLETVINFGLAVRNLCAHLVATGQELHLVNPMLMNELVDKLPANIKLD
FT                 WALYTQRVARADLRAFSDYMNVIVDAASRVTPAMDKSEKPKSKAHVNAHTS
FT                 EGYGSKSQGERKPMSTKAYVDKSTGVSDKPCMVCKISGHKPKDCTSFKSKT
FT                 LENRWKIAQELHLCKRCLYPHGKWPCKASLCGAEGCQQRHHKLLHPRDPAQ
FT                 EQESTASASAVTGVVSVHQHCHNKVLFRIIPVMLHANGKSVETFAFLDSGS
FT                 DSTLVEKSLVEQLGVEGTVSPLCMQWTNGVKRTEENSRKVQFHISGVGQSK
FT                 QFPLRGVQTVDSLDLPRQSIHFKELECRFPHLRGLPVMSYRDGVPGILIGL
FT                 DNTKVKTSLKQREGKTNEPVATKTRLGWVVFGRSGSVDHAQPNRVLHVCSR
FT                 SYDDNLNDLVKQFFSTESVGVSALNPTESVDDRRAREILQTTTVRTPSGRY
FT                 ETGLLWRYDEINFPNSRPMAERRLKCLEHRLAKLPSLYEKMRQQMAEYQAK
FT                 GYAHQATSQELEESDPTRVWYLPLGIVVNPRKPDKLRVVWDAAATVQGVSF
FT                 NSVLLKGPDLLVPLQTVLCRYRQKEIAISADIMEMFHQVQIRQEDRQAQRF
FT                 LWRDNPAEPAKVFVMDVAIFGSTCSPCSTQFAKNINAEEHAEEFPKAAVAI
FT                 KENHYVDDYLDSVDSVDEAVQLALDVKTVHERAGFQIRHWMSNSPEVLRQI
FT                 GDQNTQAVKSFVMDKGSQQERILGMVWLPNEDMFSYKTSFHSDLERLFGAA
FT                 VVPTKREVLRLVMSLFDPLGLIASCVVEGKVIIQEIWRANVGWDEHIPSEF
FT                 FPRWQQWLEVLSSLDRVKIPRCYFPGYSKEAYETLELHVFVDASESAYATA
FT                 AYFRIVDKGEVRCSLVGAKTKVAPLKSLSIPRLELQAATIGARLMKTIVDN
FT                 HTIPIRRRVMWSDSKTVLAWLRSDQRRYRQFVAFRVTEILEETNVADWRWV
FT                 PTKQNVADEATKWGKGPHYFESCRWFKGPSFLYEDESQWPVEGVVECTTEE
FT                 LRNAQIHVQTSAGPIVQFQRFSKWERLIRTVAYVRRFYSNCQRKRSGSTII
FT                 VGCIECEELKSAEYTVWKLVQSEMFPEEVLVLEKNQNVSESEQKTVEKSSR
FT                 IYRLLPFIGEGEVIRKNGRIAASPYVPYDTKFPVVIPKEHHVTQLLINWYH
FT                 RKYGHANGETVVNEIRQKYHVPELRVVVRKATKRCNWCLVYRSVPQVPRMG
FT                 PLPLARLTPYVRAFTFVGLDYLGPLTVRVGRTNVKRWVALFTCLTTRAVHL
FT                 EVAASLSTESCKQAIRRFIARRGAPQEIYSDQGTNFQGVSGELARQIQSIN
FT                 ETLASTITNHRTQWKFNPPYAPHMGGVWERLVRSVKKGLSCLLTDRHPDDE
FT                 TLSTVLAEVESLVNSRPLTYLPLESEEHEALTPNHFLLLSSSGVVQPVQRP
FT                 TDEAAALRSSWHAIQVMLDNFWRRWMKEYLPVISPQSKWFGELRNVQVGDL
FT                 VMIANEKERNSWTRGRVLRTYPGKDRRVRRVDVQTTMGVHQRPVSKLAILN
FT                 VAGVPGIAEGSDSNTGGG"
XX
SQ   Sequence 6741 BP; 1896 A; 1591 C; 1715 G; 1539 T; 0 other;
     aacttcaaga gtttttatta caatcaaccg attgcctccg gtaacctcaa tagatgtcga        60
     ccgagtcggc cgcatatcgg cattgtactc tctgtgggca gaccaatagt cgagagccga       120
     tgattgagtg tgccagatgt cacaatcggt accataattc atgcaccggt gtccaggatg       180
     gtacgtcagc tacatctagc ccttattaca gcgagttgtg tatgccaagg gaccctgcac       240
     catccgtctc catgtcctcg tccgcctcga cctcagctag tgcacgggaa gcaagattgc       300
     aattgcaaat gcaaaagctc gctgaggaga aacgtctcca ggaaaggttg ttggccgaac       360
     gggaaaaggc agataaagaa ctgcaggaga aggcgctgcg tctcgaaaag gaaaggagtg       420
     agaaagcaat cgtcgacaag attgagctag agaaggtgta tattacgcgc aagttcgatt       480
     tgctacttgc gcaagtggac gaggaggagg aaggcagaag cgtgcgcagt cggcgaagca       540
     gtagcaaaag cgtcgaaaaa gtacaggctt ggattgacaa ccagcaagtg accctgaatt       600
     ctaaatctgg gggacgcatc cccactggaa tcacgtcaca gcagagaggt tcatcaatcc       660
     agcgagtaga cacagcggca cccatccaga atccagagcc acaacatcac cgaaccgaag       720
     ggaatgatat cagcacaatc ggagattaat ctgccgccgc gatgaatcag ctaccaagcg       780
     agttgatgaa tatgatttca ccgttttcta gtaccaacct aggtccatcg acgagtgccg       840
     cgccattact accaacatgt caatccactc ccttcgtggc accgttagct gcgagtcaac       900
     ggaaccaacc agatgatgtc gatgtcactc acgagaatcc ccaaaatcgt acctattcgg       960
     tggaaatcga tccgacgaac agcacaggca acccactgga agtcgaacaa ggtttgaatg      1020
     taaggtctgg ttcggctccg gtaagtacac caaatagaca cgttagaatc gtcaccgata      1080
     caaacgaagg tagtagggca tatcagggtg tagttacatc gacattgaat tcaaatgcaa      1140
     acgatcaatt gtaccatctt agttctaacg tcgtagctag tggttctcaa acagtagaca      1200
     gagttgcgcc aactcaatat agggcatcga acggcaccat aacactccca tccattacga      1260
     aagcaaatca aatgcctgta agactgctac acactaacag tgctccaatg ctgagcgtaa      1320
     cgagcaatca gggcccaata ttctctcttc caatgggttc ctctgctcct cctttccccc      1380
     ctctgtcaaa cgtccaatcg ttcgtgggtg atccgatcgg tcctaccttc agtcatacta      1440
     ccggtattcc aactacgttg tacgcgggtg ttagtgaaag aacggtgaat gcagctccat      1500
     tgatcggcaa ccgttactac actggaacga tatcctcggc tccagtggtc aattcaagat      1560
     tggaaaactt atggcaacca acacatctcc atccagtggc cggttcagaa tcagtgaacc      1620
     ctatggggat gaattcagca tcaggagtct acccagcggc gatcaacgct acttcggtga      1680
     atccaatgca aggcttcaac aatccaccgt ttcaacacgc agaaagaact ggcgcagggc      1740
     attctggacc ttcttcaagt ttcgatgttc aatcgttcaa caatccgacc gcacagcagc      1800
     tggcagcccg ccacgtcgtc ccgaaggagc ttccctcttt ttcggggaat ccggctgagt      1860
     ggccattatt ttggagcagc tacgaaatgt caacgagaat ctgcgggtac agtgagtcgg      1920
     agaatctcat gaggcttcaa cgctgtctca agggagaagc aaggaaagcg gtcaactgtt      1980
     tcctgctcca tccgttgaat gttccggaga tcttacgcac gctgagcact ctctatggac      2040
     gaccagaggc catcattgga accttgttgg cagaagtacg atctacacca gcaccacgat      2100
     ccgaaaaatt agaaactgtc atcaatttcg gattagccgt gcggaatctg tgcgcccact      2160
     tggtagcaac cgggcaagag ttgcatttag taaacccaat gttgatgaat gaattggtgg      2220
     ataaacttcc agcaaatatt aagctagact gggcgttgta cacccagcgc gttgcaagag      2280
     ccgatttgcg agcattttcg gattatatga acgtcattgt ggatgcagcg agtcgagtga      2340
     cgccggcgat ggataaatcg gagaaaccga agagtaaagc tcatgtaaat gcccatacat      2400
     cggaaggcta cggcagcaag agtcaagggg agcgcaagcc tatgtcgacg aaagcgtacg      2460
     ttgacaagtc aacaggagtc agtgacaagc catgcatggt ttgcaagata agtggtcaca      2520
     aaccgaagga ctgtacgtct ttcaaatcca aaacactgga aaaccgatgg aagatcgcgc      2580
     aagaacttca cctttgcaaa aggtgtctct acccacacgg caagtggcct tgcaaagcat      2640
     cgttgtgtgg tgccgaagga tgtcaacaac gtcatcataa acttctgcat cccagagacc      2700
     cagcgcagga gcaagagtct actgcatctg ctagcgctgt aacaggtgtg gtttctgttc      2760
     atcaacactg tcacaacaaa gttttgttca gaatcattcc ggtcatgcta cacgccaacg      2820
     gcaaatccgt cgaaacattt gcgttccttg acagtggttc agactcaacg ttggtggaga      2880
     agtcactggt tgagcaactc ggcgtggagg gtactgtatc ccctttgtgc atgcaatgga      2940
     ccaatggtgt caagcgaacc gaagaaaatt ccaggaaagt tcaattccac atttctggag      3000
     tagggcagag caagcagttt ccactgagag gcgtacagac agtggatagc ctggaccttc      3060
     ctcgacaatc gattcacttc aaagaactcg aatgccgttt tcctcatctg cgtggattac      3120
     ctgtcatgag ttaccgtgac ggtgttccag gtatccttat cggcctcgat aataccaaag      3180
     tgaagacttc gctgaaacaa cgtgaaggaa agaccaatga acctgtagcc accaaaacca      3240
     ggctgggttg ggttgtgttt ggccgttccg gttccgtaga tcacgctcaa cctaatcgag      3300
     tactccacgt ttgctcccgt tcttatgacg acaacctcaa tgatttagtc aagcagtttt      3360
     tctcgacaga aagcgttgga gtgtctgctt taaatccaac tgagtcggta gatgatagac      3420
     gggcacgaga aatactccag acgacgacgg ttcgtacgcc ttccggaaga tacgaaacag      3480
     gcctgctgtg gagatacgat gaaatcaatt ttccaaacag ccgaccaatg gctgaacgtc      3540
     gtctcaaatg cctcgaacat cgtcttgcca agttacccag cctttacgag aaaatgcgac      3600
     agcagatggc cgaatatcag gcaaaaggtt acgcccatca agctacgtca caggagttgg      3660
     aagaatcgga tcccacacgg gtctggtacc tgcctttagg tatcgtcgta aaccctcgca      3720
     aacctgataa actgcgcgtc gtctgggatg cggccgccac tgttcaagga gtctcgttca      3780
     attcagttct tttgaaagga ccggatttac tagtgcctct tcagactgtg ctttgccgct      3840
     atcgacaaaa agaaatagcg attagcgccg acattatgga aatgttccat caggtgcaga      3900
     tcagacaaga agatcgacaa gcccaaaggt tcttgtggcg agacaatcca gcagagccag      3960
     caaaagtttt tgtgatggat gtggcaatat ttggatcgac gtgttcgcca tgttccacac      4020
     agtttgcgaa gaacatcaac gccgaagagc atgcagaaga gttcccgaaa gccgctgttg      4080
     cgataaaaga gaaccactac gtcgacgact atctggatag cgtcgacagc gtcgacgaag      4140
     cggttcaact tgcgttggac gtgaaaactg tccacgaaag agctggtttc cagatccggc      4200
     attggatgtc gaactctccg gaagtattaa ggcaaattgg ggaccagaac actcaagcgg      4260
     tgaaaagttt cgtgatggac aaaggtagtc agcaagaacg cattttggga atggtctggt      4320
     tacccaacga agacatgttt tcgtataaga caagtttcca tagcgatctg gaacgccttt      4380
     ttggtgcagc ggttgtccct actaaacggg aggttctgag gctagtgatg agcctgtttg      4440
     atccgcttgg tctcatcgca tcttgtgtcg tcgaaggaaa ggtgatcatc caagaaatct      4500
     ggagagctaa tgtcggttgg gacgagcata taccctctga attttttcca cgttggcagc      4560
     agtggctgga agtgttaagt tcgctcgata gagtgaagat cccccgatgc tacttcccag      4620
     gatatagcaa ggaggcttac gaaacactcg aactacatgt cttcgtcgac gcaagtgaaa      4680
     gtgcgtacgc taccgccgcc tacttcagaa ttgtcgacaa aggagaggta cgatgcagtt      4740
     tagttggagc gaaaactaag gtggctccgt tgaaatcgct ttctataccc cgcttagaac      4800
     ttcaggcggc tacaattgga gcgcggttga tgaagaccat cgtagacaac catactatcc      4860
     cgatcagacg cagagtcatg tggagcgatt caaaaacggt gctggcgtgg cttcggtcag      4920
     accaaaggcg atatcgacag tttgtggcgt ttcgcgtcac agagatactt gaagaaacga      4980
     acgttgcaga ctggaggtgg gtaccaacca agcagaatgt ggcggacgag gccaccaaat      5040
     ggggcaaagg tcctcactac ttcgagagct gccgatggtt caaaggacct tcatttttgt      5100
     acgaggacga aagtcagtgg ccagtggaag gcgtagtaga gtgtaccacc gaagaactga      5160
     gaaacgctca gattcacgtc caaacttcgg cagggccgat agtacaattt caacgattct      5220
     ccaaatggga gaggcttatc agaaccgttg cttatgtacg ccgtttctac agcaattgcc      5280
     aacgcaaaag gtctggctct acaatcatcg tgggctgtat agaatgcgaa gagctaaaat      5340
     cggctgaata tacggtctgg aagttggtac aatcggaaat gttcccagaa gaagtccttg      5400
     tattagaaaa aaatcaaaac gtctcagaaa gtgagcagaa aactgtggag aaaagtagcc      5460
     gtatctatag actgttgccg tttattggtg aaggagaagt tatacggaag aatgggcgaa      5520
     ttgcagcatc accatacgtt ccgtacgaca ccaaatttcc ggttgtcata cctaaagaac      5580
     accacgttac acagctactg ataaactggt atcaccgaaa atatggccac gcgaacgggg      5640
     aaacggtggt caatgaaata cgacaaaaat accacgttcc ggagcttaga gttgttgtaa      5700
     gaaaggccac aaaacgctgc aattggtgct tggtctatag atctgtacct caggttccga      5760
     gaatgggtcc tttacctttg gcaagactta cgccctatgt gagagccttc actttcgtag      5820
     ggctagatta tctcggacct ttgactgttc gtgttgggag gacaaatgtc aagcgatggg      5880
     tagccctgtt tacttgcctg acaactaggg cagttcattt agaagttgcg gcgtcgttgt      5940
     ccacagaatc atgtaaacag gctattcgaa gattcattgc acggagagga gctcctcagg      6000
     agatttattc ggaccaagga acgaatttcc aaggagttag cggtgaattg gcaaggcaaa      6060
     tacagtccat caacgaaacc ctcgcttcta ccatcaccaa ccacaggacc cagtggaagt      6120
     tcaaccctcc gtacgctcca cacatgggag gcgtgtggga gagacttgtg cgatccgtta      6180
     agaagggtct cagctgttta ctgacagata gacaccctga tgatgaaact ttgtcgacag      6240
     tgcttgctga ggtagaatcg cttgtgaact cacgccccct gacctaccta cccttggaga      6300
     gcgaagaaca cgaggcttta acgcccaatc attttttgct cttgagctcc agcggggtgg      6360
     ttcaaccagt tcaaaggcct acagatgaag ctgctgctct tcgttccagt tggcatgcga      6420
     ttcaggtaat gctggataac ttctggaggc gttggatgaa ggagtacctt ccagttatat      6480
     cgcctcaatc caaatggttt ggagagctgc gaaacgttca agttggagat ttggtgatga      6540
     tagctaatga gaaggagaga aacagctgga cacgagggag agtactccga acttatccag      6600
     gaaaggatcg aagagttaga agagtcgacg tgcagactac gatgggagtt catcaacgac      6660
     ctgtttccaa gttggctata ctgaacgtcg cgggagttcc aggtatagct gaaggttcgg      6720
     acagcaatac gggtgggggt a                                                6741
//
ID   BEL-67_AA-LTR repbase;    DNA;    INV; 449 BP.
XX
AC   AAGE02020328;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_AA_;
KW   BEL-67_AA-I; BEL-67_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-449
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020328; Positions   18476   18924.
XX
SQ   Sequence 449 BP; 175 A; 93 C; 64 G; 117 T; 0 other;
     tgtgcgcgac gcagcctatt gcgttcagta ccgccccatc aacatctgct ccaacggcag        60
     actagatgtt gctgtcatct ctttgacaat gtctttgaag cctatctcta acaaaacaac       120
     acaaaatttc aacacgagaa cgtgaacaat tgaattacta ttgttaaaat cttattttcc       180
     ccccaaacac gttaaaatag taagtataat ggattaaaat tgaattcctt taaactaaaa       240
     tgtactatct atagaaagac acaaaacaca gaagaataaa cagttacaac agacggaaaa       300
     cgaacgaaga aaactaaaaa ctgtaagtta acctaaaata attaaaacaa tgaaattaat       360
     aaactttttg ttgtagcttg aagcttactc cgccaaaaac gagttcgtct aaagaggttt       420
     tctaaacacc atccgtccgt acagtaaca                                         449
//
ID   BEL-67_CQ-I repbase;    DNA;    INV; 6488 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_CQ_;
KW   BEL-67_CQ-LTR; BEL-67_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6488
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 287-287 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4961-5521] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..2720
FT                 /product="BEL-67_CQ-I_2p"
FT                 /translation="MSSHPSTKGGDAGECCIVCREEACNETVKCDRCRRRF
FT                 HFKCVGVSQELDGWRCAICWNEEPVFKTNSDGAGTSGLKPIPKFEELLTPV
FT                 GPGKKKPSADPAKKVTKPKKELKPRPKPTPKPNPKPDPKPNPEPDPKPAPE
FT                 PIPTPVPDIPKLPPKKAKSLVSHISSASGSTSKAVLKLKLQKLEEQRLLIE
FT                 TQMEKERTLLENERTLLERKYEVLEEKYQLLEEQVAGSDGVESRNGSVTES
FT                 RFAPPDASSRHSDSSDEPKQSSYANSSSPGEKTGKHHGKTPQPDRTDFPKR
FT                 DPCPLTTKQLAARQAVSKDLPCFNGNPADWPLFISTFDSTTAMCGFTDEEN
FT                 IFRLVKCLKGRALERVQNRLTHPANLPGILRTLKLMYGQPEAIVHSLIGKI
FT                 HALPVVSADDFEALVDFAVTVENFCATVDSCGLEEHLYNVTLLHQLVNKLP
FT                 PTIKLNWAQYKLSLPGANLASFSNWIYSLAEAASTIIIPNNPASQPVRNES
FT                 RSTTKKENAFLNAHSNDTSPEPSNVNKSSKPSEGCLVCKGSCKTIDKCKRF
FT                 LELSRDSRWAAVREFSLCRSCLRRHAGDCQQKCGKDGCQFRHHKLLHNDQK
FT                 PFSPGTTSSESPSQLPSTNNSEKPKEESSSTLHGCHTHQTKSSGTLFRYLP
FT                 VMLSGKRRSVRAYAFLDDGSALTLLDRELADELGLEGEVNPLCLHWTGGTQ
FT                 RQETNSRIVSLEISGTHGGAKSYPISGVRTVNELMLPFQTMDLDELSQLNT
FT                 HLLGLPIASYHGVRPQILIGLKNLHLSMILNCREGKPDQPIAVKTRLGWTV
FT                 CGGGNPELVPSPVHSVFHVASGDTDEDLHRTMKDYFALDSLGIMKPGGPLL
FT                 STEDQRAQSLQESLTRFTGERYETGLLWRSDKTRLPDS"
XX
SQ   Sequence 6488 BP; 1663 A; 1726 C; 1665 G; 1284 T; 150 other;
     acatcttata aaatacgttt acggataatt gcgtcagtca gcccgttatg tcgagtcatc        60
     cgtcaactaa aggcggtgat gccggcgaat gctgtatagt ttgccgggag gaagcttgca       120
     atgagacggt gaagtgcgac aggtgccgca gacggttcca cttcaaatgc gtcggagtct       180
     cgcaagaact tgacggctgg agatgtgcga tatgctggaa cgaagagccc gttttcaaga       240
     cgaattcgga tggcgctggg acatccggcc tcaaaccgat tcccaagttt gaagagctgc       300
     tgacgccagt agggcccggg aagaaaaagc cgtcagcaga tccagccaaa aaggtgacta       360
     agccgaaaaa ggaactcaag cccagaccta aaccgacgcc taagccaaat cccaaaccgg       420
     accctaagcc gaaccccgaa ccagatccta agcccgcccc ggaacccatc cctacgccgg       480
     ttccggacat tccaaaactt cccccgaaga aagcaaagtc actggtgtcg cacatttcga       540
     gcgcatccgg ctcaacctct aaagccgtcc tgaagttgaa gctacagaaa ctggaggaac       600
     aacgtttgct gatcgagaca caaatggaga aggaacggac tctgctggag aatgaaagga       660
     cgctgctaga aaggaagtac gaggtattag aggaaaagta ccagttactt gaggagcagg       720
     tagcgggctc tgatggcgta gaaagcagga acgggtcggt cacggagtcg aggtttgcac       780
     cacccgatgc ctcaagtcgg cactcggact caagtgatga accaaaacaa tcgtcctacg       840
     caaacagctc gtcaccggga gaaaaaactg gaaagcacca cgggaaaacg cctcaaccgg       900
     atcgcactga ctttcctaaa cgagatccgt gcccgctgac caccaagcag ctggcagctc       960
     gccaggccgt ttctaaggat cttccctgct ttaacggcaa ccctgcggac tggccgctct      1020
     ttatatccac attcgacagc acgacggcta tgtgtggatt cacagacgaa gagaacattt      1080
     ttcggctagt gaaatgtctg aaagggcgag cgctcgaaag ggttcaaaac cgtctaacgc      1140
     acccagccaa ccttcccggg attcttagga cgctgaaact gatgtatggg caaccagagg      1200
     caattgtaca ctcgctgatc gggaagatcc acgcgctacc ggttgtaagc gcagatgatt      1260
     tcgaagccct tgtggatttc gcggtgaccg tcgaaaactt ctgtgccaca gtggattctt      1320
     gtggcctcga agaacatctg tataacgtca cgcttttgca tcaactggta aacaaactgc      1380
     caccgactat caaactaaac tgggcccagt acaagctctc actcccagga gccaacctgg      1440
     cctccttcag caattggatc tactccctag cagaagcggc aagcaccatc attatcccta      1500
     acaacccagc ttctcagcca gtgcgaaacg aatcaaggag cacaacaaag aaggaaaatg      1560
     cctttctgaa tgcgcactcc aatgatacgt cgccagagcc gtcgaacgta aacaaatcga      1620
     gcaagccctc cgaaggttgt ctggtgtgca aaggtagctg caaaacaatc gacaagtgca      1680
     agcgattcct agagctctct cgcgattcta gatgggcggc ggtgcgcgag ttctcactct      1740
     gcagaagctg tcttcgtcga cacgctggag attgccagca aaaatgcggg aaagacggat      1800
     gccagttcag gcaccacaag cttctgcaca acgatcagaa gccgttctca cctgggacaa      1860
     catcatccga gtctccaagc caactgccct caacgaacaa cagcgaaaag cccaaggaag      1920
     agtcgagttc gacgttgcac ggctgtcaca cacaccaaac taagtctagt ggaactctat      1980
     tccgctatct cccggtaatg ctgtccggga aacgtcgatc tgttcgagcg tacgctttcc      2040
     tcgatgatgg ctcagcactg accctgcttg accgagagct agccgacgaa ttggggctgg      2100
     aaggtgaagt caacccattg tgcctgcact ggacaggagg cacacagcgt caagaaacaa      2160
     actcacggat tgtaagcctg gaaatttctg gaactcatgg cggggcgaaa agctacccca      2220
     tcagcggcgt tcgtacagtt aacgagctta tgctcccgtt ccaaacaatg gaccttgatg      2280
     agctctccca actcaacacc catctgctag gtctaccaat tgcgtcctat cacggtgttc      2340
     gaccacaaat cttgatcggc ctcaagaatc tgcaccttag catgatactc aattgccgtg      2400
     agggaaaacc agatcaacca attgcagtaa agacacggct gggatggacg gtatgtggtg      2460
     gcggaaaccc agaattggtt cccagtccag tacattccgt tttccatgtg gcgtccggcg      2520
     acacggacga agatctgcac agaaccatga aggactactt tgcactggat agcttgggta      2580
     tcatgaagcc tggcggccca ttgctctcca ctgaggacca acgcgcgcaa tccctacaag      2640
     aatcgctgac cagattcaca ggagaacgct acgaaactgg tttactttgg cgctcggaca      2700
     agacgcgctt accagacagc maggmtatgg ccctgcgtcg wttcaagtgc ctkgaaaggc      2760
     gcatggaaag agatsmagma ctggccgaag cgctgaagsa gaagatgacs gaccacctgc      2820
     gcaaaggtta catccggaag ctcactcagc aagaattgaa ccagtcttgs caacgctctt      2880
     ggtaccttcc ggtgtttcck gtcacgaacc ccaacaagcc cggtaaggtg cgaatggtst      2940
     gggacgcggc ggccaaatct cacggagtgt ccctcaactc agcgcttctw aagggacccg      3000
     atttgctgwc ttcgctctat accgtgctaa tcctcttccg wgagaaccct gtcgcgctgw      3060
     ccggagacat cmgggagatg tttcatcagg ttgcaatccg ccaagaagac cagcastgcc      3120
     agcggttctw ctggmgggat gaagacgggc agttagcagt gtacgcgatg tgtgtcatga      3180
     ctttcggcgc ctgttgctct ccgagcagcg cccagtwcgt gawgaaccwt aacgcagawc      3240
     gctttacgcg ggaatacccw acggcggcgg aagtcatacg gaatcaacac tacgtcgacg      3300
     acatgctgtc tagcgtsgac accgaagmgg aagcgatcga gmtsgcgaag gacgtgaagt      3360
     ttgtgcackc tgaaggcggg ttcgaaatcc gtaactgggt cwscaactcw cascgcgtcc      3420
     tscmggcttt gcttggggat amcgccgaag agaagaactt ggatctgtcg ccggagatgg      3480
     ctacggaaaa ggtgctcgga atgtggtggt gtactsaagc cgacktcttc acattcaagg      3540
     tcgkctggga tcggtacgac sgwgacctgc tggaaggtcg tcgccgaccc acgaagcgkg      3600
     aggtactsag sgttctcatg wcgatattcg atcccctggg gctcatcgca ccgttcctsg      3660
     tkcatctgaa aatcctacts caagacgtct ggcgctcggg tgtccwatgg gacgacaaga      3720
     tcaacgacaa gtmkttckma aagtggawaa tctggctgcg cgtcctccca caagttgaac      3780
     gaatacaaat wccacgttgc ttccgattgg ggttccctga ctacgacgaa gttcaactgc      3840
     acacgttcgt ggatgcgagc gagaacgcaa tgkctgccac gtgctatttg cgcttcgwga      3900
     aggacggatc aattaggtgc tctcaagtwg ccggcaagac cmgagtcgct ccactgagat      3960
     wccwctcgat ccccaaacta gagtgtgagt cagcggtggt cggcgtcmgg ctagcccgca      4020
     ccgtaaccga atcgctctcg ttcacagtag acaagcgctt ctwtcacacg gactcccggg      4080
     atgtcmtctg ttggctgaac tcmgatcatc gtcggtacws sccwttcgta gcmtcccggg      4140
     taagtgaaat tctggagwat accgaggtta acsagtggmg atgggtgccg wccaaactga      4200
     atgtcgccga tgacgcaaca aagtgggaaa agcttccaga catgacatcg agttcgcgat      4260
     ggttcaacgg tccggaattc ctgtggcwgc cggaagaagc ctggccgcgs cagctggaga      4320
     aaggctgcca aaccgacgtc gagctccgcc caagcctgtt agcacacttt acgaaaccag      4380
     actctacaat tgaggtatcc agctggaagc tgatgcttaa agttgctgtg gttgtccatc      4440
     gtttcccctc aactgtaggc gcaagaaagc taagcagccg gccatctgtg gaccacccac      4500
     atcggaggaa ctccttgcag ctgagcgtta cgtgtttcgc caagctcaac gagaggtcta      4560
     cgcagatgat gttgccattc ttctgagacg tacggaagaa gccataacta acctctctcc      4620
     aaccagttca ctgtacaagc tgtcaccgtg gttggacaag catggtttgc tgcgaatgcg      4680
     aggaagaata agcgcctgcg cgctagtcac cgaagacgcc aagaacccaa tcatccttcc      4740
     tcgtgaccac cacgctacgc aactcgtaat cgaacacwat cacaacaaat accatcacca      4800
     aaatcacgag accgtcataa acgagctgcg acaaaggttc agcatcccgc ggctgcgcgt      4860
     tgtttatgct aacgtgcgta aaaactgtca acggtgcaag aacgaccgcg ccaccccaag      4920
     gccacccatg atggcggatc taccaccaga gcggcttgat gcactwgctc gaccgtttac      4980
     acacgtgggc atcgattatt tcgggccatt ggtggtctcc gtcggccgcc gcacggagaa      5040
     gcgatgggga atgctgatca cctgcttgac cactcgggct atccacatcg aggtggtgca      5100
     cagtctcagc accgattcgt gcatcatggg cctacgaaac ttctcggcac gtcgaggaac      5160
     tccaagaacg atctacagtg accgtgggac ctgtttcatc ggagcaaaac gggagataca      5220
     cgaagctacc gagaacataa aactagaaga tgtaatgaag gaatttgtta gtgtggagac      5280
     aacctggaag ttcaaccctc ctctgtcacc acacatgggc ggtagctggg agaggctcat      5340
     cggaattgtg aagcgcaatt tgatggcaat ccgtcccgtg agaaacccca gcgacgaagt      5400
     actgcgaaat cttcttactg aaatcgagca cactgtcaac tcgcggccgc tgacacacgt      5460
     tccagtagac gacgaatccg cccctgcgct tactccgaat cacttcctgt tgggtacatc      5520
     cgacggttcc aagccaacct gcacactcga tgacgatgga atggtactgc gacggagctg      5580
     gcgaacatct caggtgttgg ccaaccgatt ctggaaacgg tggcttaacg attacttgcc      5640
     ggaaatcacc cgcaggacaa aatggttctg taactccaag ccgattgaaa ttggtgacat      5700
     agtcgtaatc gttgatccac ttctacccag gaactgctgg cctaagggaa agatcatcgg      5760
     aaccagcata agcaagaagg atggtcagac tagggcagcc mcggtgcgaa cgtcgactgg      5820
     tgtctacgaa cgtcctgttg ccaagttagc agtgctggat gttcggcgcg attakgtttg      5880
     agctgactgg cgagtcagct cacctggggg gagtgttacc tgcgccactg cgcagggtgc      5940
     gcacctcatc caccaacccc ttgggaatca acacaggcca actgacacga cggcccgcgg      6000
     ctgtcamcag cgtgaagtag caagtcacta cttagattca gttgcaaagt gmgttcgtwc      6060
     gmagacagcm ggtksggmas tttagagtgc cgcaaaggta cgaagctcgt aaktgccagt      6120
     ttkggwtcwa tmgaacgtca kttgtmagtg cscgtgkaam tmtcacgwga ctkmwagawt      6180
     atcctttaga gtkcggcact agwkgwtcas ttccaakmwg gcsgcgatca atcctccwcg      6240
     tgcggwwcat macwcgwgtg attcttaacc tcamaakgma wcaskctgwc aggtkmkgag      6300
     tgcgacamtc wgtgtggaac cagccwtcaa atckaacgta ccattasmtt cagcttcaaa      6360
     gcgagttcgc acgcwgaccg acaaacmggc acttgagaga gctttaagwk ccgcwmamgt      6420
     amggagwcta wamktattag tttgaaatct atagactwat tgcactaaat ctataagagc      6480
     acgcgaag                                                               6488
//
ID   BEL-67_CQ-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_CQ_;
KW   BEL-67_CQ-I; BEL-67_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-167
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 288-288 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 167 BP; 44 A; 46 C; 25 G; 52 T; 0 other;
     tgactcagat tatgaattct atttataatt acaccttttt tctactgctc aggtatttta        60
     taacctgccc caccctgcaa atacacgatt tcacgcaagt ccagtgtctt attgccccgg       120
     cggttataaa attggaaacc ctcaagctcg ttgccccaac ctggaca                     167
//
ID   BEL-67_DTa-I repbase;    DNA;    INV; 5186 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   25-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5186
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 93% identity to
CC   each other. Internal polyN region represent a gap.
XX
SQ   Sequence 5186 BP; 1363 A; 1227 C; 1190 G; 1389 T; 17 other;
     tttggtgacc ccgacgtgat agcaattcgg ctattgcatt aacaaataat taaaaatcag        60
     tgcgagcgtg cattttagaa ttttcgcaca catacatacg cgcatacagt gaacgggttc       120
     aaatacagtt tcgtgaacac cggtctcact gcaacggttc ttatcatctc tatctcattc       180
     cacctccttc gcgcccgcgg caactgtact cgcgttcgaa tttgactttg gtgttgagtg       240
     ctaacagaac attgcggtaa actatgtcgg acgaagaagt gggaagtgag acgccgacgc       300
     aaaacagggt gtcttttaac aaacgcaaag taaatcccct tgttaagcga gtgcaaagta       360
     taagcaattt cccaagacgc tattggggag cttagtacca ttgatttaga agtgcgtcta       420
     aatttaataa accaattagc aacctcattt aatactgcgc ttgacgaatt ggacaacgac       480
     gaaatcgata gccaaactcg cgaaattttc gacaattgtg taatggcaat tatagttcgt       540
     gctcgcagcc aattgcagat tcgtaggccg gagcagccgc cctgctctac gttccgccac       600
     gaagactcat cggatcggcc aaccgtcgtt gtggccaaca gatcgcgcgt cccggaagta       660
     aaattgccaa ccttcgctgg cggctacacg gagtttgcag atttcgtctc cgtttttaca       720
     tcaattaata cataacgatt cggaattgtc aaatatcgag aagcttcaaa atctgcgatc       780
     ctgtgtacat ggcccggcgt tagatacaat cagagcgctg gagatttctg acgcaaacta       840
     tcttgcagcg ctagatcttt taaataaacg ttttggtaac aagcgtcttg tatttcaggc       900
     acacatcagc gagatgtttg ggcttgagaa ggtggaggtg gcgtctgcaa taaaactacg       960
     gaaactatcg gacaagctaa atgcacattt gcgcgctctt ctgggaatgg tcaccttgga      1020
     ggagttttct ggagctatat ttgcctacat acttcttcaa aaattggaca gagctactca      1080
     atctaaatgg gaagaaaatg catcgatggg ggaaataccg aagatcgcgg atttcacctc      1140
     gtttttagaa gcacgatgcc aacgcctgga aactatggaa catgccacgg ccacatacgc      1200
     gcctggcaag caggttggaa ggaacaaacc taacactagt agaaattcat ttgtagcaac      1260
     taattccagc ggtcagggtt ttgatttttg tagaaatcct agccactcta tatactcatg      1320
     cacatctttc ggcaaccttg caccgtctgc tcgattaaag gaggtcaaaa aggttgggct      1380
     ttgtatcaat tgccttaaag gaggccacca ggttcgagca tgcaaatcta tcagtgcgtg      1440
     tcgcgtctgt ggctcaaggc atcacacatt gcttcatttc aacacaccgg atgccactgc      1500
     atcaccaaat ttgacgagcg tgtcccaacc cgccgaacca ccttctccag tggaagaaac      1560
     ttattcgtcc agcattctta tagcccaaaa tctcaatcaa gatgtagtgc ttcttgcgac      1620
     agtagtcatc cttgtaaaaa attatgctgg aactctcgtt ccatgccgcg cnnnnnnnnn      1680
     nnnnnnnnag gagccaattt gttctttgat cttctctcag tcggccaaat caggttgtcg      1740
     tcggagctac cactacttca gaaaacgcgt ttcggttggg tggcttcagg aggtagcaga      1800
     caatctcaga ggacggcatt agttgcagct caatccacgc cgcaatatga acaagaggct      1860
     gatgaaagaa tcgatttgct gctaaggcgt ttttgtgata ttgcatcttg tggctcaaac      1920
     ttcgaaaaaa aaacttcgaa aaggtcaaac aagaatatat agatagtgag aatcacttta      1980
     agtcaaattt ttctcgcctc ccaactgggg agttttctgt taggttgccg ttaaagcgaa      2040
     acttggatgt cttaggcgat tcttatacac aggcttttcg acgatttctt aacttggaaa      2100
     gaaaactgga ccggcatcct caactaaagg aaaggtacgc agcgttcatc aaggaatatc      2160
     gagatttggc tcacatgtcg ttggtgggtc ccgaagtaca gagtcggtgc caatactatt      2220
     tgccgcatca ttgcgtcctt aaggaggaca gttcgaccac gaagcttagg gttgtattcg      2280
     acggctctgc tgccacgtcc accggatttt cgttgaacga cgttctcatg accggtccca      2340
     ctcttcaagc taaattgttc catactctgc tgcgttttcg aacctttcga gtagcattaa      2400
     ccggggacat ttgtaagatg tacagatgtg ttcgcgttcc agagcctgat agcttcctgc      2460
     agtgatccta tggagagact cttcacggga gaaaatacaa acctatagac tcgatacagt      2520
     tacatacgga acccgatcag cggcctttct tgcaactcgt tgcatgcaac agttggctca      2580
     tgatgagcaa gatgcatatc cgatcggctc tgtcattcta aattgtgatt tttacgttga      2640
     tgatttaatg acaggaggcg aatctataga agaggtggct gagatcatga agcagacaac      2700
     ggaattattg aaggaaggtc acttccaaat cagaaagtgg tgctctaacg catcagagct      2760
     tttaaatgga atttctagcc aggataagga gaagctacta aggtttcacg atggaacaga      2820
     cttcacaaag acccttggct tgctttggga tcccgcttca gatcgatttc tcttctctgt      2880
     ctcgcccgga tcgacgtcac ctaggccaac gaaacgctct attctgtcca tcgtcgctcg      2940
     cttttatgac cccctaggat tggttggacc catcataacg aaggccaaaa tatttctaca      3000
     gctcttatgg aaggagcaac ttcattggga tgaaagcttg ccggcctcgt tggcatctgc      3060
     ttggatcgcc ttctatgata gtttgtctaa ctctccacgt ttcacctttc cgcggctagt      3120
     tgtacttcca gatactcaag ttgaagtcca tggattctgc gacgccagta tactcgcata      3180
     tggtgcttgc atctacattg tatcaagagg aaagggaata actcaatcgc agctgctgtg      3240
     ctcaagatct cgcgtggcac ctcttaaggg tatgacagtt cccaagctgg agctgtgcgg      3300
     agcagagttg ctcgctcagc ttattaatga agtagcaggc atgaaaatat tcgccggaag      3360
     attctattgt tggtccgact caaccactgt tttgtcgtgg attcgcagcg agcccgcccg      3420
     gtttactgtc tttgtatcaa acagagtcgc cagcattcag aagctgacgt tgacttacgc      3480
     agattggcgc tacataccca ctaaattgaa tccggcagac acattgtcaa ggggagctct      3540
     tccttcggag ctcataggct caaaactatg gtttgaaggg ccagccttcc tatccaagga      3600
     tcaagcttca tggccagtat ctgtaatttc aaaggaacca ttaccagagc ttcgtaaacg      3660
     agtcttcctc gcaacatgtc catttgcgga tctaacggaa ggacacaaat tcgcaaactc      3720
     cttccacaaa ttacagcgtt cttttggata catgtttaag tttcatcaga ggaccaaatc      3780
     aagcgggttg acattggccg atttagttgg aggcactcga atgcttgttc ggtcgatcca      3840
     acaagtgcac ctgtggagcg atttgatatg catatccgaa aagggccagg ttgcgctgtc      3900
     cagctcaaca tcgtcgctca atccattcgt tgatgaattt gggattctgc gcgtcggcgg      3960
     aagacttaag aactcaactc tggactttaa tgctcgtcat cctattatac ttccaaggag      4020
     ccatcctgtc acagtcgcta tgatcttata tttccatgaa aggaatctcc acgctggacc      4080
     tcgtgcgctg cttgctataa ttcgtcatca gtactggccg gtcggcgggc gcaaattagt      4140
     ggcaagcgta gtgaacaaat gcatcaggtg ttttagggcc aagccgcgtt tactccagca      4200
     catcatggca gacctcccca aggaaagatt ggatgacgga tcgtacactt ttatgatcac      4260
     cggagaagat ttctgtggtc ccttttatta caaaagcgaa gtgcgtactc ggccgccaat      4320
     aaaatgctac atctgcgtgt tcatctgctt cgcaacgaag gccatacacc tggaactggt      4380
     gcaggatttg tcttctcctg cttttattag cgcccttcag cggtttattt ctactagatg      4440
     ccggcccaga gaaatatggt ctgacaatgc gactaatttc gtgggagcca gtaacgagct      4500
     taagcgttta aaggagttgt tcatgagcga tacgcatcag aaggcagtac aagacttctg      4560
     tgtagcggat caaatcgatt ggcgttttat acctcctcgc tctccgcact ttggtgggct      4620
     gtgggaggcc gcggtaaaaa ctgctaagta ccacttctat cgctcagctt ctagctcgat      4680
     cctcgctttt gatgacttac gtaccctagt ttgccatatt acttcaatcg taaactcacg      4740
     acccttaatt tccattacag agcatccaga cgacttggat gtactgactt ctgctcatta      4800
     tttgggcaca actccaccca aatctctggc agacgtcact agattaaact tcaatcgcct      4860
     tgatcgttgg caaagagttt cctatcttca acagactttt ggtcccgctg gaaggaggag      4920
     tacctcaccc tcttacaaga gaggtctaaa tggagatcga accaatctgg acttgctgtc      4980
     ggtgatacag tccttatcaa gaatgagaac taaccgcctc ttagttggcc attagcaagg      5040
     ctgcccaagc taatcgtcgg agctgatggt gttgcaagag ttgctgagct taagaccgcc      5100
     ctgaacacca caactagggc tgttgccaag ctttgtctgc tgcctaagat ggatgttgga      5160
     gaaccgtgcc ctccaacggg ggggta                                           5186
//
ID   BEL-67_DTa-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   25-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-67_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-347
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5680-5680 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identity to consensus.
XX
SQ   Sequence 347 BP; 78 A; 84 C; 73 G; 101 T; 11 other;
     tgtccagcta wgcgcttwsc tagaccgcgc aacacagctg agaagaagag cgccgtataa        60
     cagctgtccc ttgttgttgc tttcggctgc tgcagcgagt catcggctgc gtccgatcgt       120
     aattcagttc gttttctacc tctcgccttt tcgtttcgca tgcaaacggc aagcatttgg       180
     cctgccgtct ttgcaatcat tgaattgaac atacattcgc caataaacaa cgaatactta       240
     tattgttaat tcggwcaatt wgtttgtatt tkakkgkttg gttattggat tctcgagcgc       300
     cktattggcc aacagtgcta ktgaaaaggc tcactctagc cgcaaca                     347
//
ID   BEL-680_AA-I repbase;    DNA;    INV; 6265 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-680_;
KW   BEL-680_AA-I; BEL-680_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6265
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6265
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..6263
FT                 /product="BEL-680_AA-I_1p"
FT                 /translation="MQGDTKTCGVCTGSGMTSQMIGCDMCDTWFHPICIGE
FT                 TETNVDPDKTWRCNRCAADEATEKASVHTRKSTRSTASSKARKQLLMDQLE
FT                 EQRRFTLRQRAEEDEIRKKRAAEDEAYLQQKMNIIMEESEEDERSRVSSRA
FT                 SRKKVLDWLINEPAGANIPVTRSSCGTTNQQTASCVAVSGTHEPKPVATLA
FT                 ERSLIIPASTSTPRSESNELLQVSMDQPTALKRNPILAMGMFTQPGTRTNG
FT                 GPGNTDLYSNIIPKTTSVAQVVSVVPTGSNYASGSIPSAVPLSTQFAKGLS
FT                 LETTVPGRKSSDVPLGLLDTAVHGTRNFGVSDSERLPVQNPVHLPQARSTY
FT                 TVYEPASRADQGGASHQQIHASQNGYQEGQQTGFSYQSAPTSAQLAARQVM
FT                 PRELPAFSGDPQDWPLFSSSFYNSTMACGFTDAENLARLQRCLRGHALDSV
FT                 KSRLLMPQSVPHVMETLRKLYGRPEILIYSLMQALRAVPSPRAENLQSIIN
FT                 FGMAVRNLVDHMYVAQLLDHLRNPMLLHELVEKLPPQLKMQWSWYKRTQGD
FT                 VNLATFGEFMTELTDTASDVTLPLDMLSPSARNKPERNNLKLYVHANAEKD
FT                 QTKTTIAGCQTRFSQTHESTKKACWYCADDKHEIAGCPQFTALDLDGRWKA
FT                 IRSKGLCRTCLIPHRQWPCRAGKECGIDGCRMRHHALLHYQTVSEVNAGPS
FT                 GSCNNCTSCSHHIALESQSTNCLFRYLPVTLENGGKSVETFAFLDDGCQTT
FT                 LMEAELATELGVVGPVESLWLGWTGNISREEKGSQRVKVNISGSGLKSQFR
FT                 LNNVRTVQKLKLQSQTLNYDQLQKTYPHLRGLPLCNYVNAIPRIIIGIEHV
FT                 QLLTTLKAREGKPNEPVAVKTRLGWSIYGKQSENFAAVEQLHIHTEKQVGN
FT                 HELHDMMKKFFAIDEAAVSSPIESLENIRAVEILERTTRRINGRFETGLLW
FT                 KYDRPTFPDSLPLALRRLRSLENRLNKDLQLRDQVICLIREYEEKGYAHKI
FT                 TKEELESTENNRLWYLPLGVVRNPKKPQKVRLIWDAAARVNGLSFNDMLLK
FT                 GPDMLTSLFNVLLRFRQRSVAICGDIREMFHQIQIISEDKQYQRFLFREHL
FT                 DDPPQIYVMDVATFGAACSPCSSQFVKNKNAEEFKANYPKATEAIIKAHYV
FT                 DDYLDSVDTVEEAVKLVAEVKHVHAQGGFEIRNFSSNSEEVLEQLGESQSL
FT                 EKKSLSMDASVYIERVLGMVWMPTVDVFSFDTTLKEDMELLLAQNIPPTKR
FT                 QVLKLVMSLFDPCGFISHFIVHGKILMQRIWRTGTDWDEQILPELQEMWKD
FT                 WTQLLKRLDDVKIPRCVFGGADSKLPASIQLHLFVDASELAYACVAYLRIV
FT                 QAGTVHCGIIAAKTKVAPLKPLSIPRLELQAGVIGCRLMETICSSLDLSIE
FT                 SRHIWTDSSTVLAWVKSDSRRYHPFVAFRIGEILNSTECNEWHYVPTKLNV
FT                 ADDATKWGTGPDFNPSARYFIGDSFLYQPMDKWPQIKNEWRTNEELRSVFH
FT                 SHRELPKPLINVTRFSKFSRLLRSTAYMLRSVKMMRGHKIYGGLSSDELLQ
FT                 AENFLWRQVQLEVYPDEYCTLQYNREHQNESPKQIEKRSVLYQECPFIDDN
FT                 GVMRMYSRIGAAPTAPFEAKYPIILPKDHLLTILLVDSYHRRFVHINHNTV
FT                 INELLQRFRIPQLRRVVNRVIKACLHCKVKKATPSPPMMAPLPEVRLTPNI
FT                 RAFNYTGIDYFGPLLVKQGRNLVKRWVALFTCLATRAVHLEVVHSLSTQSC
FT                 VMAIRRFVARRGSPSAFYTDNGTCFVGASNLLREQLQAIHEDCADTFTNAR
FT                 TTWHFNPPSAPHMGGCWERMVRSVKMAMMAITEHPRHPSDEVLETVLLDAE
FT                 AMINSRPLTFIPLENANQEALTPNHFLLYGTRGVVQPRTAPVVEGATLRDS
FT                 WKLTQYLVNQMWKRWVHEYLPTLARRTKWFRQTNPLTPGDLVLIVDENKRN
FT                 GWQRGRIIEVLPGKDGQVRRAVVQTCEGVFTRPTVKLALLDIHAKPGQEVD
FT                 EGSPELHGRG"
XX
SQ   Sequence 6265 BP; 1840 A; 1431 C; 1537 G; 1457 T; 0 other;
     aactttaaag attcactact tggaccaagg actgtcggag tcatcggcag cagagtttat        60
     cgatcctgcg tagtaagcag agaagagctg cgaagtaagc agtgaagcac cagatacaag       120
     atcaacttta atcaagctaa gtccaaatag ttacgatgca gggagacaca aaaacatgtg       180
     gggtgtgcac tggcagtggc atgacaagcc aaatgatagg atgtgacatg tgcgatacat       240
     ggtttcaccc tatctgcatc ggcgaaactg aaacgaacgt cgacccagat aaaacatgga       300
     gatgtaatcg ttgcgctgca gatgaagcta cggaaaaggc cagcgtgcat acccgaaagt       360
     ctacacgaag cacggcaagc agcaaagcaa gaaagcaact gctgatggac caactggaag       420
     agcagcgccg ttttacattg cgacaacggg cagaagagga tgaaatccgt aagaaacgcg       480
     ctgcagaaga tgaggcctat ctccagcaga agatgaatat tattatggaa gagagtgaag       540
     aagacgaaag aagcagagta agtagccgag caagtcgtaa gaaggtttta gactggctga       600
     tcaacgaacc ggcaggtgca aacataccgg ttacaaggtc gtcatgtgga accaccaatc       660
     agcagactgc atcttgtgtt gcggtatccg gtacccatga gccgaagccc gtagctacac       720
     tagctgaaag gtctttaatc atcccagcat ctacttctac accacgttca gaatcgaacg       780
     aactactcca agtctcaatg gaccaaccaa ctgcgctgaa aagaaatcca atcttagcaa       840
     tgggtatgtt tacgcaacca ggaacacgaa caaacggagg tcccgggaat actgacctgt       900
     attcaaatat tattcctaaa actacgtccg tagcacaagt ggtgtcagtc gtgcctaccg       960
     gatcaaacta cgcttctggt tcaataccat ctgctgttcc actctcgact caattcgcca      1020
     agggtctgtc tctcgagact acggttccag gccgtaaatc gtccgatgtt ccattaggtt      1080
     tacttgacac ggccgttcat gggacaagga actttggtgt gtctgactcg gagcgtttac      1140
     cggtacaaaa tccagtacat ttgccacaag ctagatcaac atacacagtg tatgaacctg      1200
     cttcacgagc cgatcaagga ggagcgtcac accaacagat tcacgcttca cagaatggat      1260
     atcaggaagg acagcaaacg ggattctcct atcagtcagc tcctactagc gcacaattag      1320
     cggcgcgtca agtaatgcca cgggaattac ccgctttctc tggagacccc caggattggc      1380
     ctttattctc cagctcgttt tataacagca cgatggcgtg tggattcaca gacgcggaaa      1440
     atcttgcacg gcttcagcgt tgtttgcggg ggcatgcatt ggattctgta aaaagccgat      1500
     tattgatgcc acaatcagtg ccccacgtta tggagacctt gcgaaaactg tatgggcgcc      1560
     cggagatcct aatttacagt ctaatgcaag cactgcgagc cgttccgtca ccaagggctg      1620
     agaatctaca gtcaatcatc aactttggaa tggccgtgcg taacttggta gaccatatgt      1680
     acgtggcaca gctcttagac cacctgcgca atccgatgtt gttacatgag ttggtagaaa      1740
     aacttccacc gcaactaaaa atgcaatggt catggtataa acggacgcag ggggatgtca      1800
     acctggcaac attcggggaa tttatgaccg aactcaccga tacggcatcg gatgtcactc      1860
     ttccattaga tatgttatcc ccgtcggcga gaaacaaacc ggaacgaaat aacttgaaac      1920
     tgtatgtaca tgcaaatgcg gagaaggacc aaaccaagac gacaatcgct ggttgtcaga      1980
     cacgattttc ccagacacat gagtcgacca aaaaggcttg ctggtattgc gccgacgata      2040
     agcatgagat agcaggctgt ccacaattta ctgccttgga tttagatgga cgatggaagg      2100
     cgattcgttc caagggactt tgtagaacat gcttgatccc acacaggcaa tggccgtgtc      2160
     gtgcgggaaa agagtgtggg attgatggat gtcgcatgcg tcatcatgct ttgctccatt      2220
     atcagacagt ttccgaagtc aacgctggtc ctagtggttc ctgtaacaat tgcacttcgt      2280
     gcagccatca tatcgctctt gaatcccagt cgacgaattg tctcttccgg tacctaccag      2340
     taactcttga aaatggaggg aaatcggttg aaacatttgc gtttttggac gatggttgcc      2400
     aaaccacact gatggaagct gaattagcaa cggagctagg cgttgtcggt ccagttgaat      2460
     ccctttggct tggttggact ggaaacatct cacgggaaga aaaagggtca caacgggtaa      2520
     aggtcaacat ttccggaagt ggactcaaga gccagtttag gcttaacaac gtccgaacag      2580
     tgcagaagtt aaagctacaa agtcagacgc ttaattatga ccagttgcag aagacgtacc      2640
     ctcacttaag aggacttcct ttgtgcaact atgtcaatgc aatacctagg atcatcattg      2700
     gcatcgagca tgtgcaactc ctgactacac tgaaagcacg agagggaaaa ccaaatgagc      2760
     cagtggcggt caagacccgg ctaggatgga gcatctacgg caaacaatca gaaaactttg      2820
     cggcagtcga acagttgcat attcacacag aaaagcaggt tgggaatcat gaactgcacg      2880
     atatgatgaa aaagtttttt gctattgacg aagcagcggt atcttcacct attgagtcct      2940
     tagaaaacat tcgtgctgtg gagatccttg aacgaacgac acgtagaata aatggacggt      3000
     tcgagactgg attgctgtgg aagtacgata ggccgacctt cccagatagc ctccctctag      3060
     cgttacgcag attgaggtcc ctagaaaacc gacttaacaa ggacctgcaa ttacgagatc      3120
     aagtgatatg cttgattaga gaatatgagg agaagggata tgctcacaag ataaccaaag      3180
     aagagctaga atccacggaa aataatcggt tatggtattt acccctcggg gttgtacgaa      3240
     atccaaaaaa gccacagaaa gttcgtttaa tttgggatgc agcagctcga gtgaatggtc      3300
     tgtcgttcaa cgacatgctt ttaaaaggac cggatatgct gacgtcgttg ttcaatgtac      3360
     tgttgcgatt taggcagaga tctgtggcca tatgtggaga catacgcgag atgttccatc      3420
     aaattcagat aatctcagaa gacaagcagt atcagagatt cctgtttcgc gagcatctgg      3480
     atgatccgcc acagatttat gtgatggatg tggcaacatt tggagcagcc tgttccccct      3540
     gttcgtcaca gttcgtgaaa aacaaaaacg ctgaggagtt caaggctaat tatccgaagg      3600
     caactgaagc aataatcaag gctcactatg tagacgacta ccttgatagt gtggatacag      3660
     tggaggaagc cgtcaaattg gtagcagagg tgaaacacgt acacgcgcaa ggtggttttg      3720
     aaattcgcaa cttttcgtca aattctgaag aagtgttaga gcagctagga gaaagccaga      3780
     gcctcgaaaa gaagtcgctg agcatggatg cgtccgtata tatcgagcga gtattaggaa      3840
     tggtgtggat gccaactgta gacgtgtttt cgttcgatac aacccttaaa gaggacatgg      3900
     agctactttt ggcgcagaat atacccccta caaagagaca ggttttgaag ttggttatgt      3960
     cgctattcga tccgtgcgga tttatatcac acttcatcgt gcatggcaag atactgatgc      4020
     aacgaatttg gagaactggg acggattggg acgagcaaat attacccgaa ctgcaagaaa      4080
     tgtggaagga ctggacacaa ttattgaagc gattggatga cgtcaaaata ccgcgttgtg      4140
     tgttcggagg agcagacagt aaactaccag ccagcattca gcttcatctg ttcgttgatg      4200
     ccagtgagct tgcgtacgct tgcgttgctt atttgcgaat cgttcaagcg ggaactgttc      4260
     attgtggcat catagccgca aagaccaaag tagcaccgtt gaaaccgttg tccatcccac      4320
     gacttgagct tcaagctgga gtaatcggct gtcgcctaat ggaaacaatc tgtagttctc      4380
     ttgatttgtc aattgaaagc cgacacatat ggaccgattc ttcaactgta ctcgcctggg      4440
     taaagtctga cagtcgtcga taccatcctt tcgttgcatt tcggataggc gaaatactga      4500
     atagcaccga atgcaacgag tggcactatg tcccgaccaa attgaacgta gccgacgatg      4560
     ctacgaagtg gggaactggt cctgatttca acccaagtgc acgctatttc attggagata      4620
     gctttctcta ccaaccaatg gataaatggc cacaaatcaa aaacgaatgg cgtacgaacg      4680
     aagaactccg atcggttttt cactcccatc gagaactccc aaaaccacta ataaatgtta      4740
     ctcgattctc taaattcagt cgtttgctac gttcaactgc atacatgctc aggtcggtga      4800
     agatgatgcg tggacacaaa atctacggcg gtttgtccag cgacgaactt ctacaggcag      4860
     aaaactttct gtggcgtcaa gtacagctcg aagtctaccc agatgaatat tgtactctgc      4920
     agtataatag agaacaccag aacgagtcac caaagcagat tgagaagagg agcgtgctgt      4980
     atcaggagtg tccatttatt gacgacaacg gagtaatgag gatgtatagc agaattgggg      5040
     ctgcccctac cgccccattt gaagctaagt atcccattat tttaccgaaa gatcatctcc      5100
     taacgatact tcttgtcgac agctatcaca gacgtttcgt tcacatcaac cataatactg      5160
     tgatcaacga actacttcaa cgcttcagaa tcccacagct tcgacgagta gtcaatcgtg      5220
     tcattaaagc atgcttacac tgcaaggtga agaaagcgac acccagtcca ccaatgatgg      5280
     ctcctcttcc tgaggtccga ttgacaccaa acatacgtgc attcaactac accggcatcg      5340
     actatttcgg accactcttg gtaaaacaag ggcgaaactt ggttaaacgt tgggtggcgt      5400
     tgtttacgtg cctcgcaacg cgtgctgtgc acttagaggt agttcatagc ctctcgacgc      5460
     aatcctgcgt gatggcgata aggcgattcg tggctcgtag aggttctcca tctgcatttt      5520
     acacggacaa tggaacgtgt ttcgtaggag ccagtaacct tttgagagaa caactccaag      5580
     ctatacacga ggactgtgct gatacgttca cgaacgcgag aaccacctgg cacttcaacc      5640
     ccccgtctgc gccccacatg ggcggttgct gggagaggat ggttcgctca gtaaagatgg      5700
     ctatgatggc aattacagaa caccctcgtc atccatccga tgaggtacta gagaccgttt      5760
     tgctagacgc ggaagccatg attaactcac gaccgcttac atttatccct ctcgaaaacg      5820
     ccaatcaaga agcactcaca cctaaccact tcctgttata cggtacccga ggagtcgtcc      5880
     aaccgagaac agcacctgtg gtcgaaggtg caacactaag ggatagctgg aagcttactc      5940
     aatatttggt caaccaaatg tggaagagat gggttcacga gtatctacca acattagcca      6000
     ggcgtacaaa atggtttcgc cagactaatc ctctgacacc tggagatttg gtgttaatag      6060
     tcgatgaaaa taagcgcaac ggttggcaga gaggacgaat catcgaagtg ttaccaggaa      6120
     aagatggcca agttagaaga gcggtagtac agacatgcga gggcgttttt acgaggccaa      6180
     ccgtaaaatt agcgctgtta gacattcacg cgaagccagg gcaagaagtg gacgagggat      6240
     ccccggaact tcacgggcgg gggaa                                            6265
//
ID   BEL-680_AA-LTR repbase;    DNA;    INV; 767 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-680_AA-I;
KW   BEL-680_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-767
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-767
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 290-290 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 767 BP; 244 A; 152 C; 152 G; 218 T; 1 other;
     tgttgaaaac cactgtaatc aaaaatccgt actgtgagtt ccgaacgctc cctaaatgag        60
     aactgtcaaa aggccgtcat caaaggaaag acagaaaagg gaaagttata gtgaaacgac       120
     tacaaagcgt ggatcgagta tctccaacaa ttgtataaga cagtttattt acccaaaccc       180
     tctagaaagt attctgctac taagtgcgca cgctatttgt gattcttaca ttacggtatg       240
     gaagacggca actaacaact tgatcgaaac agcctgtagt ttcatccatg caaggctgga       300
     acgacatgtt ccctatatcc ataattataa ccacaacctt tcgtaggagt caacaattac       360
     gcacgttagc caacaggact ttgatcgccg tgcatcggat cagtcggaaa ggaatacgtc       420
     taattaagag cgaggcagca actttggtag ccttaagaca gagatatcag gaaaaccgtg       480
     agttgaatta aaacctacaa tttgtgccgt agttactttg aatgaatttg taatttgaac       540
     ctttcgttac acatttagga tagagcttcg ttgtttgatt aagtatcatc tgaatttgtt       600
     catttgcgga ttctggttga gataatactg aatgtaagca tttcggttta aacattgtga       660
     actattgtct aatgaattcc caatacattc cagcttwaaa gctgtttacc actggtactg       720
     ctaaaaggaa gtgttttaat ctctcagagc cctccgcgtc tcgaaca                     767
//
ID   BEL-681_AA-I repbase;    DNA;    INV; 6074 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-681_;
KW   BEL-681_AA-I; BEL-681_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6074
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6074
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 307-307 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           15..5870
FT                 /product="BEL-681_AA-I_1p"
FT                 /translation="MANENDSIGTPDPINSGCIACSRSHTVDDFVCCDKCN
FT                 RWWHFSCAGVTASVENRDWVCPRCLPDPDVVASIISSTGSVTSSQRRRHEE
FT                 HLALLAEQQRLERQQLQQEHELQRKHLEQKRQLLSVQDVYENRSIRSRRSA
FT                 GNSRTSQWVDKHADVTPAYVEEGAVGGILAQQDAKSSPVNGKQRLEGQNPS
FT                 ESQIVLDLQNKLKLNEAESRQQIEILKNQLEKLQTELLERSADKSAPLVSQ
FT                 KGTIPKSRPVLPNMPPVPTPLSNPINWEISPVETGTIKAVGQEQQHNRKFS
FT                 SQVKMGTAITSQIPSQKPTVADLEQKQPLPTEVINQTGTRKSTTTTRPLTH
FT                 PQQGYQVSNMNRMPIVNQASSFDFPPQVTPGLGTMTRSIPSPEQLAARQVL
FT                 PRDLPVFSGDPADWPIFISNYNYTTEACGYSEGENMIRLQRCLKGVAWESV
FT                 RSRLILPASVPQVVESLRMRFGRADLLIESLIEKVRTSSMLRADKLDTLIE
FT                 FGTLVQGLCDHIIAAELLEHLENPTLLKDLVNKLPVEYKMKWASYRRHAGV
FT                 VNLETFSVFMAGIVEDAYSVSTFAPSERLGRREKQHTDRSFIHNEASRNDV
FT                 DQHQEERTNSRNISGIICSFCHQTGHRTRECQSFLALTVDERWNQVHNLGL
FT                 CRTCLFGHGRRTCRSTNRCGVDGCYFRHHPLLHSPSSILRNTQTVEHNIHL
FT                 QQVDLFKLFFRIIPVTLHGPSGSINTFAFLDEGSSLTMIETSLANHLGIDG
FT                 YEHPLCLKWTGNVTRDEKQSCRIAVEISGIRSEERYWMRNVGTVPSLSLPE
FT                 QTLPIQQMREYYTHLRGIPIDGYHDAVPRLLIGIDNLKLALPLKVREGEEG
FT                 HPVAVKTRLGWCVYGGKRDSRHEPINFHICECENGNVMEETINAYFATEEV
FT                 GARPIVEGLSNEEQRALQILEQTTIHTGERYESGLLWKYDHFELPDSYPMA
FT                 VKRMQCLQRRMDKDPTLKEELDRQIQAYIQKGYAHRATTEELSVVDPRRMW
FT                 FLPLGAVVNPKKPTKVRLIWDASAKVDGISLNSMLLRGPDQLSSLPSVVFR
FT                 FRQHKVAVVGDIKEMFHQICISKSDRYAQCFLWKTGASQEPDIMVMDVATF
FT                 GATSSPATAQFVKNTNAMRFAGTLPRAVDGIIHSHYVDDYLDSFPDEEQAK
FT                 QVATEVREIHRTGGFEIRNWGSNSKIVLEHLGNGQEEAIKSLNLENNVVSE
FT                 RVLGMLWRSKEDVICFETAMRETIKKIIEANTKPTKRQILQCVMTLFDPLG
FT                 LLAPYLIFGRILIQDVWRAGIGWDELVDDNIFKAWQKWINMIGDIDHVQIP
FT                 RCYFRYPDSRSLANIQLHIFVDASPLAYSCACYFRIINAMGNIEVALVAAK
FT                 AKVSPLKPMSIPRLELQACVLGTRMLKLVVDGHTLHVARRYLWTDSTTAYT
FT                 WIHKGPHRYRPFVAHRVGEILESTKREEWQWIRSKMNSADEATKWGVGPHF
FT                 NSNSSWFSGPKFLQLPEAQWTISTPTVNSEDEELRAIHMHQELSQPDAVID
FT                 IKRFSSWNKLLRATAFVFRFLANLRNLPECREKGYLTQNELQQAETTLLKL
FT                 VQRENYAEEVIIMTTDQNSNQSVRNSIPRTSSLYQLNPIIDQQGVLRVDGR
FT                 IGAAKRVPYGLKHPIILPRKHYITKLIIEDVHRKFQHGNNETVVNEVRQRF
FT                 YIPQLRREVRXVVNHCQLCRIKRARPIHPQMAPLPEARLSPYARPFSYTGV
FT                 DYFGPILVKVGRSHAKRWVALYTCLTVRAIHVELVHSLTTEAFVMSLRRFV
FT                 SRRGAPIEIYSDNATNFHGAERILREQIYAGLAATFTNTTTAWHFIPPGAP
FT                 HMGGSWERMVRSVKSAISSAYGNDKLDDEALQTLLIEAESIVNSRPLTYLP
FT                 LDSSEQEAITPNHFLLGSSSGVRQPAAQPISGPQVFGDPGPFYKDSSTDFG
FT                 KDGSASICQRLQNVRSGSEKRKTLNQES"
XX
SQ   Sequence 6074 BP; 1817 A; 1463 C; 1443 G; 1350 T; 1 other;
     tcttcaatga attcatggcg aacgaaaacg attccattgg cacgccagat ccgatcaact        60
     cgggatgcat tgcttgtagt agatctcata cggtggacga tttcgtgtgc tgcgataaat       120
     gtaaccgctg gtggcatttc tcttgtgctg gagtgacagc ttcagtagag aatcgcgatt       180
     gggtctgccc gcgatgcctt ccggatccag acgtcgtagc atcgattatc tcatcaactg       240
     gatcagttac ttctagccaa cggcgacgcc atgaagaaca tctagctctc ctggcggaac       300
     aacaacgatt agagaggcaa caattgcaac aggagcacga actgcaacgg aaacatttgg       360
     aacaaaaacg ccaactatta tcggtccaag atgtatatga gaaccgcagt attcgtagcc       420
     gccgtagcgc tggtaattca cgtaccagtc aatgggtaga caagcacgca gacgtcacac       480
     cggcgtacgt agaagaaggc gcagtgggag gaattctggc ccagcaggac gccaaatcgt       540
     caccggtgaa cggcaagcag cgattagaag gtcagaaccc ttcggagtcg cagatcgtcc       600
     tagatcttca aaataagctc aaacttaacg aagccgaatc tcgtcagcaa atcgagattc       660
     tcaaaaatca actcgaaaag ctccaaaccg agctactaga aagatcagcg gacaaatcgg       720
     ccccgttagt gtctcaaaag ggtacaattc caaaaagccg cccggttttg ccgaatatgc       780
     caccggtacc gacacctctg tccaatccga tcaattggga aatatctccc gtggaaaccg       840
     ggacaatcaa agcagtaggc caagaacaac agcataaccg taaattcagc agtcaagtga       900
     agatgggaac cgcaataacg tctcagattc cgagccaaaa accgaccgtt gcggacttag       960
     agcaaaagca acctcttcct actgaggtga tcaaccaaac aggtacacga aaatcaacca      1020
     cgactactcg accactcact caccctcagc aaggctatca agtcagtaat atgaatcgca      1080
     tgcctatcgt caatcaggca agctcgttcg atttcccccc acaagtaaca ccgggcctcg      1140
     gaaccatgac caggagtata ccatcaccgg aacaactagc cgctagacag gtccttccac      1200
     gcgatctgcc agtattctcc ggggaccccg ctgactggcc aatatttatc agtaattata      1260
     actacaccac ggaagcgtgt gggtacagcg aaggagagaa tatgattcga ttacagcgct      1320
     gcctgaaagg tgtcgcatgg gaatcggtga gaagtaggct gatcctccca gcatccgttc      1380
     cgcaggtggt cgagtcactg cgaatgcgct ttggtcgtgc tgatctgctg atcgaatccc      1440
     tcattgaaaa ggtcagaacg tcttcgatgt tgagagcaga taaacttgat acgctgatag      1500
     aatttggaac attggttcaa ggactctgcg atcacattat tgcagctgaa ctgctggaac      1560
     acctcgaaaa tccaacgctt ctcaaggacc tagtgaataa actcccagtc gaatacaaaa      1620
     tgaagtgggc aagctatcga agacatgctg gtgttgtcaa tttagaaaca ttcagcgtgt      1680
     tcatggccgg aattgtagaa gacgcatata gcgtatccac ctttgcacca agtgagcggt      1740
     taggtagacg tgagaagcaa cacaccgaca gaagcttcat acacaacgaa gccagtagga      1800
     acgatgtgga tcaacaccaa gaggaaagaa ctaattcgcg aaatatttct gggatcatat      1860
     gttccttctg ccaccaaact gggcatcgta cgagagagtg tcaatccttc ctggctttaa      1920
     ctgtcgacga acgctggaat caggtgcaca acctaggtct atgtcggaca tgtttatttg      1980
     gacacgggcg tagaacatgt cgtagcacta accgatgtgg agtagacggc tgctactttc      2040
     gtcatcaccc actcttacac tctccttcgt ccattctcag gaacacccag acagttgagc      2100
     ataatatcca tcttcagcag gtcgatttat tcaaactgtt ctttcgcatc attccggtaa      2160
     cgctccatgg gccgtcagga agtatcaaca cgtttgcctt cttagatgaa gggtcgtcgc      2220
     tcacaatgat agaaaccagc ttggcgaacc atttagggat cgacggatac gaacatccac      2280
     tttgcttaaa atggacgggc aacgttacgc gtgatgagaa gcagtcctgc agaatcgctg      2340
     tagagatatc agggataagg agcgaagaac gatactggat gcgaaacgtt ggaactgttc      2400
     catcattgag cttacctgaa caaactctgc cgatacaaca aatgagagag tactacaccc      2460
     accttcgcgg aataccaatt gacggatatc atgatgctgt gcctcgtctg ttaattggaa      2520
     tcgataacct taagctagca ctacctttga aagtgcgaga aggagaagag ggacatccag      2580
     tcgcagtgaa gacccgttta gggtggtgcg tctatggtgg gaaacgagat agccgtcacg      2640
     agccaattaa cttccatatt tgcgaatgcg agaatgggaa cgtaatggag gaaacaatta      2700
     atgcatattt cgcaacggaa gaggtgggtg ctcgccccat cgttgaagga ttgtcaaacg      2760
     aggagcaacg agctctgcag atattagaac aaaccacaat ccataccggt gaaaggtatg      2820
     aatcgggact cctgtggaag tatgaccact ttgagcttcc agacagctat ccaatggctg      2880
     tcaaaaggat gcaatgtctg cagcgtagga tggacaaaga tccgacactg aaggaagaac      2940
     tcgacagaca aattcaagca tatatccaga aaggatacgc tcatagagca actacagaag      3000
     aactatctgt agtagatccg cgacgcatgt ggtttttgcc cttgggagcg gtagtcaatc      3060
     caaaaaaacc taccaaggtt cgattgatct gggacgcttc tgccaaggtc gatggcatat      3120
     cactcaacag catgctgttg agaggacccg accaactatc gtctctccct tccgtcgtat      3180
     tccgctttcg gcagcataag gtggccgtgg ttggtgacat taaagaaatg tttcaccaga      3240
     tatgcataag taagtccgat cgttatgcac agtgcttctt atggaaaacc ggtgcatcgc      3300
     aagagccgga tataatggtg atggatgtgg ccacatttgg agccactagt tctccggcga      3360
     cggcgcagtt tgtaaaaaat acgaatgcca tgagattcgc cggaacctta ccgagagctg      3420
     tcgacgggat catccatagc cactacgtgg acgattatct cgacagcttc ccagatgaag      3480
     aacaagccaa acaggtggct accgaggtcc gagaaataca tagaacaggt ggatttgaaa      3540
     tccgcaactg gggctccaac agcaaaattg ttctggaaca cttgggcaat ggacaggaag      3600
     aagcgataaa aagcctgaac ctagaaaata atgtggtatc agaacgagtc ctgggcatgc      3660
     tttggagaag taaagaagac gtaatttgct ttgagacggc tatgcgagaa accataaaaa      3720
     agatcattga ggcaaatacc aaaccaacca agcgccaaat actgcagtgt gtcatgacac      3780
     tgttcgaccc tttaggcctt ctagctcctt accttatatt tgggagaatc cttatccagg      3840
     acgtatggcg cgccggaatt ggatgggatg aactagtgga tgacaatata ttcaaggctt      3900
     ggcaaaaatg gatcaacatg atcggtgata tagaccatgt tcaaatccca cgatgttact      3960
     tccgttatcc agatagccgc agtcttgcga atattcagct ccacatattc gtagacgcta      4020
     gcccactagc ttattcctgc gcctgctact ttcgaatcat caacgctatg gggaacatcg      4080
     aagtggctct agtagccgct aaagcaaagg tgtctccgct caaacccatg agcattccaa      4140
     gattagagct acaggcctgt gtattgggaa cacgaatgct gaagctagta gtagatggac      4200
     atacacttca tgttgcccga cggtaccttt ggacggactc caccacggcc tacacatgga      4260
     tccacaaagg tccacatcga tatcgtccat ttgtcgctca tcgggtagga gagatcttag      4320
     aatccacaaa gcgagaagaa tggcaatgga tccgttcaaa aatgaactca gcagacgaag      4380
     ctaccaaatg gggtgtcgga cctcacttca acagtaatag tagctggttc agcggaccaa      4440
     aatttctgca acttccagaa gctcaatgga ccatatcgac acctaccgta aatagcgaag      4500
     acgaagaact acgagcaatc cacatgcatc aagaactgag tcaaccagat gcagttattg      4560
     atattaagcg tttctcatca tggaataaac tactgcgtgc aaccgctttc gtctttaggt      4620
     ttttggcaaa cctacggaat ctacccgaat gccgtgaaaa aggatatcta acccaaaatg      4680
     aactgcaaca agccgaaaca acacttctga agctggttca acgagaaaat tatgcagaag      4740
     aagtaatcat catgacgacc gatcagaatt ccaatcagtc tgtccgtaac tctattccta      4800
     gaaccagctc actctatcag ttaaacccta taattgatca acaaggcgta ctacgagtcg      4860
     atggacgaat tggagcagct aaacgtgtac catacggact aaaacatccg ataatccttc      4920
     ctaggaagca ctacatcacc aagctaataa ttgaagacgt gcataggaaa tttcagcacg      4980
     gtaataacga aaccgttgta aacgaggtgc gtcaaaggtt ctacataccc caattgcgaa      5040
     gagaggtaag aakcgtggtt aatcactgtc agctgtgtag aatcaaacgg gcgcgaccaa      5100
     tacatccaca aatggcccca cttccagaag ctcggctatc gccatacgcg cgtccattct      5160
     cgtataccgg ggtcgactat ttcggtccca tactcgtgaa agtcggcaga agtcatgcta      5220
     agcgctgggt cgcgctatac acatgtctaa cagttcgtgc gattcatgtt gaactcgtac      5280
     atagcttgac taccgaagcg ttcgtcatga gtctgcgcag attcgtaagt cgtcgtgggg      5340
     ctcctattga aatctacagt gacaacgcca cgaatttcca tggggcagaa cgaatccttc      5400
     gagaacaaat atacgctgga ttggcagcaa cattcaccaa caccacaacg gcttggcact      5460
     ttattcctcc tggggccccc cacatggggg ggtcgtggga gcgtatggtg aggtcggtta      5520
     aatcggcaat atcttctgcg tatggaaatg ataaacttga tgacgaagcg cttcaaacgc      5580
     tactaatcga ggcagaatca atagtgaact cacgccctct aacatattta ccgttagatt      5640
     cgtcggaaca agaagcgatc acccctaacc acttcctgct cggtagttca tcgggagtgc      5700
     gacaaccagc agcccaacca atcagcggcc cccaagtctt cggcgatcct ggaccattct      5760
     acaaggacag ctcgacagat tttggaaaag atggatccgc gagtatctgc caacgcttac      5820
     aaaacgtacg aagtggttcg gaaaaacgaa aaacattgaa ccaggagagc tagttgtaat      5880
     cgtcgacgat actaagcgaa acaactggac tagaggacgt gttctagaag tcatagtcgc      5940
     agaggatgga gctgtgagac aagccattgt ccagaccgca ggaggtattc taagacgtcc      6000
     tgcttccaag cttgcggtct tggaagtatc tgatgatcat ggaacctcaa ccgagggttc      6060
     catcgggggg agga                                                        6074
//
ID   BEL-681_AA-LTR repbase;    DNA;    INV; 587 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-681_AA-I;
KW   BEL-681_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-587
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-587
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 274-274 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 587 BP; 202 A; 109 C; 109 G; 167 T; 0 other;
     tgttggcgct ccagaatcca actggcaact cggtttaagg cgtagtttga caacgtaaag        60
     gtggtcgcca gtctacgatc cactgacatt actgtcatcg tggtgactaa gcatcttgtg       120
     acacaaccaa caagtaggaa gcttaaagaa aaacttgtta caatttatta gaatttggaa       180
     gactatttgg gaacggccat agattctcga ttaagaagta ggtaatagtg tgtaaaacga       240
     tacaacatat catttatact atgtttccat aggtagccta aatagccaat aatcgcgaag       300
     tgaatttgac aattagagtg tataccacat tattcagtaa gcgggatctg aatccctttg       360
     atacagatta gatgcataat catttctcta gttacagagg ccagaatagc ctaaatactg       420
     aaacgttgat attgggacag aacaactgag aagtccactg aattgtaaga tgacaattta       480
     aatatttaat atgacctcct tatgaactgc tcaccaatat tttcagcttt gaagcaataa       540
     ataaacagct ctcaaacatc agtgtaaacc ttcgtcctat atcaaca                     587
//
ID   BEL-682_AA-I repbase;    DNA;    INV; 6399 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-682_;
KW   BEL-682_AA-I; BEL-682_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6399
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6399
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 308-308 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..6396
FT                 /product="BEL-682_AA-I_1p"
FT                 /translation="MSRRNEPQQREGAFDETTIGHHCKLCENSDNSRMVQC
FT                 DKCNAWYHFECVGVTADIEHHDFICAACKVVKGGVKKKRKTSAKVLSDAPP
FT                 VSSHADDQNTVPPHSKAPQSVLATRANQLDPSAYFVASSTASIGVVSGAPV
FT                 TSATPVTFSTSPMYDQFVSSSAYASTATHGPAVPLPTTIPPNIFEVTNQTS
FT                 MSGLSLPLVLAPPVQSVPSYATLPQRIPGYFPEVLRAAQCFTVPSCGNQQI
FT                 PSLQYSTPLSSRNTPTISQAERTTKNIAPALIDNNPSDTKKQGREDGVSQR
FT                 SGTASSRMSRKEKRLQLELQILDEERKLQEEEQRKKREYLQKKHQLLREMA
FT                 IDSSTEDDEGEEDEEAINQKVDMWMQGLPPTEPAHIQLGGPQQRPREEYVQ
FT                 QIQVPRRPVAQQIQQVPSQPVPDIGRLRIGECTQIPSRFENIASHVGPFNP
FT                 GQRSTPRQAEFMEDNGNLSRSQVAARQAVSRELPCFNGTPEEWPLFYSTFI
FT                 TTTNMCGYTLEENLVRLQKCLKGKAYEAVKCRLLHPSSVPGIISTLKMLYG
FT                 NPDVIVHNLIAKIHNTPPPKADRLDTLIEFSLSVQNLCATIEACQLDEYSY
FT                 NVVLLRELVDKLPPSFKVDWAKYQRTIPSVNLTTFSAWLYDLAEAVCPIAT
FT                 LSTIESKTTKGKKNLAYLNTHQEEDENARSYKTNEVIKSAQPLKVCMVCKS
FT                 SCPSVDKCSRFAELSYNSKWATVKELGLCRKCLKKHKASCKSQQVCGKNGC
FT                 QYKHHQLLHNNQRDTTSISSKVPAQTTVAQSSTGRECNTHLKITNKMLFRV
FT                 VPVILYGHDKTVKTHAFLDDGSSYTLMDAALATELKLDGKPEPLCLRWTSN
FT                 HGRMENDSLRLSIEISGTREGHKKYRLQEVHTVANLSLFHQSVNVKELTEQ
FT                 YPHLRGIPVESYQDVQPRILIGIDNANLSLPLKGREGGWCEPIATKTRLGW
FT                 IIHGGTELGGELVGYHSPQKCSCGGSNDAALQNAISEYFSIESIGISPPKH
FT                 SLMSTEDQRAEEILKTIKQTESGHYVSNLLWKYDNCHLPNSKPVALQRLRC
FT                 LESRMKREPQLAEALRSKIAEYLEKGYIRKLTDKELNETHHRVWYLPIFPV
FT                 FNPNKPGKMRIVWDAAAKTNGVSLNSMMLTGPDQLTSLLSVLIQFRENKIA
FT                 ICGDLREMYHQVHISKEDQNCQRFLWRENPADAEPSTFVMQVMTFGACCSP
FT                 SCAQYVKNLNAEKHAGKYPAAAKAIIKSHYVDDMLVSTETEDDAIRLAKDV
FT                 RHVHAQAGFEMRNWITNSPGVLSALQKEKINEKSLNLGSELATEKVLGMWW
FT                 CTATDTLTFRLSQKHDANLLSGNRRPTKREVLRTLMAIFDPLGLLSNLLIF
FT                 LKILLQEIWRSGISWDDEIPTSLHEKWECWLKVLPSVHNVHVPRCYRLRTS
FT                 IGPQTNVQLHTFVDASEEGYAAVVYLRFQQDSCVECAIVAAKSRVAPIKFV
FT                 SIPRLELQAAVVGARLAKTVCSSLSFKIDEKYFWTDARDVLCWIRSDHRRY
FT                 SQYVAFRVSDILETSEVANWRWVGTKDNVADEATKWQRLPDLGSESRWFKG
FT                 PEFLWQQPANWPLEPFTTGSTKEEIRAHVFYHRTAIKSCVTVENFSSWDRL
FT                 VGTMAFVFRFLKNCRSKIAGNQRRFGPLSSIELQQASNYLFRVAQKESYPD
FT                 EISVLSNTKSIAKTVSKQSTIYSMNPFIDEQQVMRMRGRTSRCEYATMDAQ
FT                 NPIILPKDHYITMLVVRSYHERYHHRNHEVVVNELRQVFRIPKLRVVFRKV
FT                 KTNCQKCKNQRAAPQPPMMGDLPKSRMSAFCRPFTFVGVDYFGPFIVAVGR
FT                 RSEKRWGVLVTCLTTRAVYIEVAHSLSADSCIMAIRNFMVRRGVPNQIFSD
FT                 RGTNFVATNKELKAALADLNQERIIQEIVSPETEWCFNPPASPHMGGAWER
FT                 LIQTVKRNLQQVTPQRLFSDETLRNLFVEIEGIINSRPLTHVPADDPDAPV
FT                 LTPNHFILGSSSGLKPITVYDDSYSTLKRTWRTSQAEANIFWRRWVRDYLP
FT                 ELTRRTKWFSEVKPIKVGDIVVIVDPEHPRNCWPKGRVISVNVGKDNKVRS
FT                 AAVQTATGGVYERPAVKLAVLDVRRDEQNSHNSGVPGG"
XX
SQ   Sequence 6399 BP; 1876 A; 1544 C; 1559 G; 1420 T; 0 other;
     atataaaaac ttcgtttatc tgtaaacgga gatcgttcgg agatctacag catgtcgcga        60
     cggaatgaac cgcagcaacg agaaggtgcc ttcgacgaaa caacgattgg tcatcattgc       120
     aagttgtgcg agaactcaga caacagtcgc atggtccagt gcgacaagtg taacgcttgg       180
     taccacttcg aatgtgtggg cgtgactgcg gatatcgaac atcatgattt catctgcgcc       240
     gcatgcaaag tggtcaaagg aggagtcaag aagaagcgta agacatcagc taaagtgctc       300
     tcagatgccc ccccggtgag ttcgcacgca gatgaccaga ataccgtccc gccacactcg       360
     aaagcacctc agtcagtgtt agctactcgg gccaaccagc tagatccatc cgcgtacttc       420
     gttgcttcgt ccacagcaag cataggagtc gttagtggcg ctcccgttac atcagccact       480
     ccagtcacat tctcaactag ccccatgtac gaccaattcg tttcgtcttc tgcctacgct       540
     tccacagcca cccacggccc ggccgtacca ttgccaacga cgataccacc aaacatattt       600
     gaagtaacga atcaaacctc gatgtctggt ctatcattac ctcttgtact ggcccctccc       660
     gtgcagtccg tgccatcgta tgcgactctt ccacaacgca taccgggtta cttcccggaa       720
     gtgctcagag cggctcagtg tttcacagtt ccttcgtgtg ggaatcaaca gattccgtct       780
     ctgcagtaca gcacgcctct atcgtcacga aatacaccaa ccattagcca agctgaaagg       840
     accaccaaga acattgcacc tgcattgatt gataacaatc cgtccgacac caagaaacaa       900
     ggtcgggagg acggtgttag tcagcgctcc ggaactgcga gttcaagaat gtcccggaag       960
     gagaaaagac tacaattgga gttacaaatc cttgacgaag aaaggaagct gcaggaagaa      1020
     gaacaacgaa agaaacgcga gtacctccag aagaaacatc aattgctgag agagatggca      1080
     atcgactctt caacagaaga cgacgaagga gaagaagatg aggaggcgat caaccagaaa      1140
     gtggatatgt ggatgcaggg tttaccaccg accgagccag ctcatatcca gctaggtggg      1200
     ccccaacaac gtccacgaga ggaatatgta caacaaattc aggttccgcg gcgacccgta      1260
     gcgcaacaga ttcaacaagt ccccagtcaa ccagttcctg atattgggcg gctaaggatt      1320
     ggcgaatgta ctcaaattcc gtcaagattc gaaaacatcg cctctcacgt agggccgttt      1380
     aatcctggcc agcgttcgac ccctcgacaa gcagagttta tggaagacaa cggtaacttg      1440
     tcacgtagtc aagtagccgc tcgtcaagcg gtatcacgag agcttccatg ctttaatggt      1500
     actcccgagg agtggcctct tttctactct accttcatca ccacgaccaa catgtgtggc      1560
     tatacattag aagaaaactt ggtgcgcctg cagaagtgcc tcaaggggaa agcctacgag      1620
     gcagttaaat gtaggctgtt acatccatcg agcgtgccag ggatcatctc aactttaaaa      1680
     atgctgtatg gcaatcccga cgtaatagta cacaatctaa tcgcaaagat ccacaacact      1740
     ccaccaccga aagcggatag actagacaca ttgatagagt tttctctgtc agtccagaat      1800
     ctatgcgcta cgatagaagc ctgccagttg gatgagtact cgtataatgt tgtactccta      1860
     cgcgaactcg ttgacaagct ccctccttca tttaaagtgg attgggcaaa ataccagcga      1920
     actatcccaa gcgtcaatct caccacattc tcggcgtggt tgtacgatct cgccgaagct      1980
     gtttgcccga ttgccacgct gtcaactatc gagtcaaaaa caacaaaagg caagaaaaac      2040
     ttagcttatc tgaacacgca ccaggaagag gatgagaatg cacgttcata taaaacgaat      2100
     gaggtcatca agtccgcgca accattaaaa gtatgcatgg tgtgtaaaag tagctgtccc      2160
     agtgtcgaca aatgttcacg gtttgctgaa ctcagttaca attccaaatg ggcaactgtg      2220
     aaagagctcg gactgtgcag gaaatgcttg aaaaagcata aagcgtcgtg taaatctcaa      2280
     caagtttgtg gaaaaaacgg ttgtcaatac aagcaccatc aactcctcca caataatcaa      2340
     agagacacaa ccagcatttc tagtaaggtc cctgcacaga cgactgtcgc acagagctca      2400
     accgggcgtg agtgtaacac ccatctaaaa atcaccaata aaatgctgtt tcgcgtcgta      2460
     cctgttatcc tgtacggaca cgataaaacc gtgaaaaccc acgcattttt ggacgacggt      2520
     tcgtcgtaca cgctgatgga cgccgcactt gccaccgaac taaagctaga tggaaagccg      2580
     gaaccacttt gtctgaggtg gacaagcaat catggacgca tggagaacga ttcgttacga      2640
     ttgagcattg agatttctgg tacaagagag ggtcataaga agtatcgtct ccaagaggtg      2700
     cacacagttg ccaatctaag tctcttccat caatcggtga acgtgaagga gttgacagag      2760
     cagtatccgc acttgcgagg aattccggtt gaatcctacc aggacgttca accccgtatt      2820
     cttatcggta tcgacaacgc aaacttgtca ctcccgctga aagggagaga aggaggttgg      2880
     tgtgagccta tcgctacgaa aacacggtta gggtggatca tacacggcgg tacagaacta      2940
     gggggagagc tagttggata tcacagtccc caaaagtgtt cctgcggtgg gtcaaatgac      3000
     gctgcccttc aaaatgcaat cagcgaatat ttttcgatcg aaagcatagg aatttccccg      3060
     cctaaacatt cgcttatgtc gaccgaggat caacgagccg aagaaatcct taaaaccatc      3120
     aagcaaacgg aaagtggaca ctacgtttca aatttgcttt ggaagtacga caactgtcac      3180
     cttcccaaca gcaaacccgt ggctcttcaa cgactgcgct gtttggagtc ccgcatgaag      3240
     agagaacctc agttagccga agcacttcga agtaaaatcg cggaatatct ggagaagggc      3300
     tacattcgca agttgacgga taaggagttg aatgaaacgc atcatcgagt ctggtatctc      3360
     ccaatctttc cagtctttaa cccgaataaa ccgggtaaaa tgcgcatagt ttgggatgcg      3420
     gccgctaaaa ccaacggtgt gtcacttaac tcaatgatgt taactgggcc ggatcaactg      3480
     acgtccctat tatctgtact cattcagttt cgggaaaata aaatagcaat atgcggggat      3540
     ctgagagaaa tgtatcatca agtgcacatt tcaaaggagg accaaaactg ccaacgattt      3600
     ctatggagag aaaacccggc agatgcggaa ccgagtacgt ttgtaatgca ggtgatgacg      3660
     tttggggcct gctgttcacc aagctgcgcc caatacgtaa aaaatttgaa cgcggagaaa      3720
     cacgcaggaa agtatccagc cgcagccaaa gcaattatca agagccacta cgtggatgat      3780
     atgctagtca gtacggagac ggaggacgac gcaattcgac tagcaaaaga tgttcgacac      3840
     gttcatgccc aagctgggtt tgagatgcgt aactggatta ctaattcgcc aggagttctc      3900
     agcgccctac agaaagaaaa gattaacgaa aaaagcctga acctaggatc agaactagcc      3960
     acagaaaaag tgctgggtat gtggtggtgt acggcaacgg atacgctcac gttcaggctt      4020
     tcgcagaagc acgacgcaaa cttgttatca ggaaaccggc ggccaaccaa aagggaagtg      4080
     ttacggaccc tgatggccat ctttgatcct ctgggattac tttcgaacct gctgatcttc      4140
     ctcaagatac tactccaaga gatctggcgt tcgggaatca gctgggatga cgagatacca      4200
     acatcgcttc atgagaaatg ggagtgttgg ctgaaggttc ttccatcagt acacaacgtt      4260
     cacgttccaa ggtgctacag gcttcgcacg tcaatcggtc cacaaaccaa cgtgcagttg      4320
     cacacctttg tcgacgcaag cgaggaaggc tacgcggcgg tggtgtacct acgattccaa      4380
     caggatagtt gcgtggaatg tgcaatcgtt gctgcaaaat cacgagtggc cccaatcaag      4440
     ttcgtttcaa tcccacgtct cgagctacaa gcagctgttg taggggcacg attagcgaag      4500
     acggtttgca gcagtttgtc attcaaaata gacgagaaat acttctggac agatgctcgc      4560
     gacgtgctat gctggattcg ttcggatcat cgccgatatt cgcagtacgt agcgttccga      4620
     gtcagtgata tcttagaaac tagcgaagtt gctaattgga gatgggtcgg cactaaggat      4680
     aatgttgccg atgaagccac taaatggcaa cgtctaccag accttggaag cgaaagtcga      4740
     tggtttaagg gaccagagtt cctatggcaa cagcccgcta attggccact agaaccattc      4800
     acaaccggtt caactaagga ggagatacgt gcacacgtgt tttatcatag aaccgccata      4860
     aagtcatgtg taacagtgga aaattttagt agttgggatc ggctagtcgg tacgatggct      4920
     ttcgtgttcc gattcttaaa gaactgtcga agtaagattg cgggaaacca gcgtcgattc      4980
     ggccctttgt ccagcataga attacagcaa gcatcaaatt acctattcag agtggcgcag      5040
     aaagagtcat atcccgatga aataagtgtt ctttcgaaca caaaatccat agcgaagaca      5100
     gtttctaaac agagcacgat ctactcgatg aatccgttca tagatgagca gcaggtaatg      5160
     cgaatgcgtg gcagaactag tagatgcgag tacgctacga tggacgcgca gaacccgatc      5220
     attcttccaa aggaccacta tattacgatg ttggtagtac gaagttacca tgaacgctat      5280
     catcaccgta accatgaggt cgtagtcaac gaactacgtc aggtattccg aattccgaag      5340
     ctgagggttg tgtttcgtaa agtgaagaca aactgtcaga agtgcaagaa tcaacgagca      5400
     gctcctcagc caccaatgat gggcgatctc ccaaaatcca ggatgtcagc tttctgtaga      5460
     ccgttcactt tcgtgggtgt ggactatttt gggccattca tagttgcagt tggacgaaga      5520
     tcagagaagc gttggggcgt actagtgacg tgcctaacaa cgagggcagt gtacatagag      5580
     gtcgcgcact ctctgagcgc ggactcatgt attatggcga tacggaactt catggtacga      5640
     agaggtgttc caaaccaaat atttagtgat cgcggtacga atttcgtggc cacgaataag      5700
     gaactgaaag cagctctagc agatttgaat caggaaagaa ttatccagga aatagtcagc      5760
     cctgaaacgg aatggtgttt caatcccccg gcttctccgc atatgggggg agcatgggaa      5820
     agactcatcc aaactgtgaa gcgaaactta cagcaggtca caccacagcg gcttttcagt      5880
     gacgaaacac tgcgcaacct ttttgtagaa attgaaggca tcataaattc acgcccacta      5940
     acgcacgtac ctgcggatga tcctgatgct cctgtcctta ctccaaacca ttttatcttg      6000
     ggctcatcta gcggccttaa accaataaca gtgtatgacg acagctattc gacgttgaag      6060
     cgtacatggc gtacttcgca agctgaagcg aacatcttct ggcggcgttg ggtccgagac      6120
     tacttgccag aactgacgag gcgtacaaaa tggttcagcg aagtaaaacc gattaaggta      6180
     ggagatattg ttgtcatcgt agacccagag catccccgaa actgttggcc caagggccga      6240
     gtcatctccg ttaacgtagg caaagacaac aaggtacgat ctgcagcggt tcaaacggcg      6300
     accggaggag tatacgaacg tcccgcggta aaattagccg ttctcgatgt tcgacgcgat      6360
     gaacagaaca gccacaacag tggcgtacct gggggggac                             6399
//
ID   BEL-682_AA-LTR repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-682_AA-I;
KW   BEL-682_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-594
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-594
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 275-275 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 594 BP; 222 A; 104 C; 103 G; 164 T; 1 other;
     tgtgacgacc cctcggtcgg cgcgtctcac acatctgatt aaaatgataa atttggcaac        60
     ccaatacttg gggaaacgtc atcctacgaa aaggaagaac gcgaaactga cgtgagaaaa       120
     agacgttccg cgtgtgctac aaaattattg ttctatctat tcttcttgcg tttatttatt       180
     aattataact aaattacttc ctacttaaat gcwaatgaat tccctaaaat aagcaactga       240
     attcgaataa caggttagac cgtatactgc gcatatgaca aataggcaat ttccactgaa       300
     atctagtttc ttgtgaaacg ccggtaagtt ttaagaaata ttttgcacta tttgggccgg       360
     aaaaaatgtc ataaatactt acagaactat tacataaaca ccaaacgaga aagtagaagg       420
     actaagggat tacaagaagt ttgaaaagaa acaggagaag aactaaacgt aagatgttaa       480
     aaatggtaaa gatatgcaat tgcgaaaagt taacctaaat atatttcagg aagtttttat       540
     caaagcgatt aaaaacacgg atttcaattc ttctcttctt ctgtaaaccc aaca             594
//
ID   BEL-683_AA-I repbase;    DNA;    INV; 6157 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-683_;
KW   BEL-683_AA-I; BEL-683_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6157
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6157
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 309-309 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..6123
FT                 /product="BEL-683_AA-I_1p"
FT                 /translation="MSSRGAKSDGRSSKVSGKSGQKAKEGEVVSEVVGEED
FT                 MDPVVVVVDGNERTIDGYTCKTCRRADSDDMVQCDQCDGWHHFACVGVTDE
FT                 VVDQSWCCANCKTATWNQRTSTSDKNPALKDANTEHSSKRVSSQKAGSTRG
FT                 QKISSSGSRHGPPITSDPVVRSSQEPHRTGKKLFVPSLEGLPAIRLDEASS
FT                 EVSCSSSQRSARNRAKLQLQRLEEEKAFEEQQAERRRIAEQLEAEKHKAFL
FT                 DKKYQLLEQLASERGSSRCSSSVYSRNRVENWIEKGYHSEAMQQPNELPAQ
FT                 QERSQANQLPAQQEFDARQPEAIRMSKYFNPNVQPQSTRIQPAVNQVSRSL
FT                 ANSTVLEQNNNGAFSRNQAMQLDEYDPFQLSRSQIAARQAVSKDLPTFSGS
FT                 PEDWPIFLSMFNSTTAMCGFTEEENLVRLQRSLKGKAYESVKCRLMHPGNV
FT                 QGVMSTLKMLFGQPEIIVHSLIGKISSLPPIREDRLETLVDFAVSVQNFCA
FT                 TVDSCGLEEYMYNVSLLHQLVGKLPPSIKLTWAQHRKTQLTVNLATFSEWI
FT                 YSLAEAASSVTFPTESFQMKSTRNELRRKGKGETYINAHVETPNKNDTKLS
FT                 AKPKEANTSGPARETCPVCKGTCKTLEKCKRFLEFSRDSRWAVVREFGLCR
FT                 TCLRQHKGSCKANPCGKDGCSFRHHELLHNDQKPKQLNSGTAAENPQPTTS
FT                 GAELGCNTHQTVSSSVLFRYLPVVLSGPEKSIHTYAFLDEGSGTTLLDQDL
FT                 ADALQLDGKPNPICLRWTGGTERCEKNSCIVRLQVAGQHVGAEKFTLEDVQ
FT                 TVKELLLPRQTLDFDELKHTYHYLEGLPIKSYTDARPRILIGTKHAQLGLT
FT                 LRSREGKFGEPIATKTRLGWTICGNLGSGNGPSMFHYSFHVCSLNEPSNDD
FT                 MHQAMKDYFSIDSLGVGSSSKLLLSADDQRAETLLTSLTRFSGDRFETGLL
FT                 WRYDNVRLPDSRSMALRRHRCLEKRMASDPQLAEVLQQKIADYSAKGYIRK
FT                 LSKDEVQQLSSDFWYLPVFPVTNPNKPGKVRIVWDAAAKSHGVSLNSVLLK
FT                 GPDLLCSLLDILLRFRLHPVAVTGDIREMFHQVKIRQEDQQYQCFYWTDES
FT                 GELVVYTMTVMTFGACCSPSSAQYVKNLNAERFKAEFPAASAAITKSHYVD
FT                 DMLISVQTEEEAIRIAKEVSYVHTQGGFEIRNWISNSRNVVEALQGQKADQ
FT                 QKSLDLSTELSTEKVLGMWWNTSVDAFTFKVGWNRYDPELLRCGRRPTKRE
FT                 VLRVLMTIFDPLGLIAHFLAYLKVLLQDVWRSGITWDEKINDDEFKKWQDW
FT                 LSVLPQVEQLQIPRCFWPKHIIHDADDVQLHTFVDAGQNGMAAACYLRFSS
FT                 GENIYCSLVTAKARVAPLKLTSIPRLELQAAVIGTRLSRTVIDTLSIRIVK
FT                 RLYWSDSRDVLCWINSDHRRYSQFVGFRVTEILESTESHDWRYVPSKLNVA
FT                 DDATKWHGLPELSTDDRWFRGPSFLWQTAEKWPTSSTHTEVTDTELSTSLL
FT                 VHHSPPDPIIHAQNFSSWKRLQHVMALVQRFITNCRLKIQKKPINRGPLTK
FT                 SEICIAEAHLVRIAQLEEYPEELRILQSTPQQAGSSMKLLPKSSPLYKLLP
FT                 WVDDRGIMRMKTRIAACQFATEDTKNPIILPRKHHITTLIINHYHTKYHHQ
FT                 NHETVINELRQKYQIARLRSCYSQVRQKCQRCRNDRVEPNIPPMADLPPGR
FT                 LAAYCQPFTHVGVDYFGPIEVVVGRRHEKRWGMLATCLTIRAVHIEIVHSL
FT                 STDSCIMAIRNFIARRGQPRKFYSDRGTNFIGANRELQNLQAAINHDDVMK
FT                 EFTTAETEWVFNPPLAPHMGGSWERLIRSVKRNLLAVCSTKVLSDEVLRNL
FT                 LIEIENVVNSRPLTHVPVDEDSGPALTPNHFLVGSSNGSKPLVNFDDSVYT
FT                 LKQNLCTSQILANAYWKRWVTDYLPEITRRTKWFQSTKAITTGDVVVIVDP
FT                 KLPRNCWPKGRIISTKSGRDGQVRSATVQTSTGVYERPVAKLAVLDVQRVD
FT                 P"
XX
SQ   Sequence 6157 BP; 1752 A; 1477 C; 1527 G; 1401 T; 0 other;
     aaatataatt ttcgtttact acgaaaaatt cggttcgcga gcatgtcgag tcgtggtgca        60
     aagtccgacg gcagaagtag caaagtgagt ggcaagagtg ggcagaaggc caaggaaggt       120
     gaagtggtta gtgaagtggt cggtgaggag gatatggatc cggtagtagt ggtggtggat       180
     gggaacgaaa ggaccatcga tggatacacc tgtaagacct gtagaagagc cgattcggat       240
     gatatggtgc agtgtgacca gtgcgatgga tggcatcact ttgcgtgcgt tggagtcaca       300
     gatgaagttg tcgatcaaag ctggtgttgt gccaactgca agactgctac atggaaccag       360
     cgaacgtcaa catcagacaa aaatccagcg ttgaaggatg ccaacacaga acactcgtct       420
     aaacgtgttt catcgcaaaa ggcaggctct accagagggc agaagatatc atcgagcggt       480
     agccgtcacg ggccaccgat tacatcagat ccagtagtac gctcgtcgca agagccgcat       540
     aggactggaa aaaagctgtt tgttccatca ttagagggac tgcctgccat ccgattggac       600
     gaagcatcat cggaggtctc gtgttcgtca tctcagaggt cagcacgtaa tcgtgccaaa       660
     ttgcagctac agcgactaga agaggaaaag gccttcgaag agcaacaagc agagcgtcgc       720
     cggattgctg aacagctaga agcggagaaa cataaagcgt tcctggataa aaagtatcag       780
     ttactggaac agctagccag tgaacgagga tcgagtcggt gttcaagtag cgtctattcc       840
     cggaaccgtg tggagaactg gatcgagaag gggtatcatt ccgaggcaat gcaacagcca       900
     aacgaactgc cagcacagca agagcggagc caagcaaatc agctaccagc acagcaggag       960
     ttcgacgcac gtcagccaga agccatccga atgtcgaagt attttaatcc caatgttcag      1020
     ccacaatcta cgagaattca gccggcggtg aaccaggttt cccgatctct agcaaattcg      1080
     acagtcctag agcagaacaa caatggggcc ttcagccgaa accaggcgat gcaactagac      1140
     gaatacgatc cgttccagct gtcccgctct caaatcgcag cgaggcaagc ggtttcaaag      1200
     gatttaccaa cattttctgg cagcccggaa gattggccga tttttctatc gatgttcaac      1260
     agcacgacag ctatgtgtgg attcacggag gaggaaaatc tcgtgcggct gcaaagaagc      1320
     ttgaagggaa aagcttacga gtcagttaag tgtaggttga tgcatccggg taacgtacag      1380
     ggtgtaatga gcacgctgaa aatgctgttt gggcaaccgg agatcattgt tcactcattg      1440
     attgggaaga taagctctct gccgccgata cgagaagatc gcctggagac attggttgac      1500
     tttgcggtta gcgtacagaa tttctgtgcg acagttgatt catgcgggct agaagagtac      1560
     atgtacaatg taagtctcct acaccagctt gttggaaagc ttccaccatc gataaagctt      1620
     acgtgggcgc aacaccggaa gacacagctg accgtcaacc tggcgacttt cagtgagtgg      1680
     atatattcgc ttgccgaagc agctagttcg gtaacgtttc caaccgagtc gtttcagatg      1740
     aaatcgacgc gaaatgaact tcgtcggaaa ggaaaaggag aaacgtacat taacgctcac      1800
     gtagaaactc cgaataaaaa cgacactaaa ttgtctgcaa aaccgaaaga agcaaataca      1860
     tccgggccgg cgagagaaac ctgtcctgtg tgtaaaggca cctgtaaaac ccttgagaag      1920
     tgtaagcggt tcctggagtt ttcaagggat tcccggtggg ctgttgttcg agagttcggg      1980
     ctttgccgaa catgccttcg tcaacacaaa ggatcgtgca aagcgaatcc atgcggaaag      2040
     gacggatgct ccttccggca ccacgagctc cttcataacg atcaaaaacc caagcaactg      2100
     aactctggta cagcagcgga gaatcctcag ccaaccacga gcggagctga gctcggctgc      2160
     aatactcatc aaacggtttc tagctctgtt ctctttcgct atcttccagt ggtactgtca      2220
     ggaccagaaa agagtatcca cacttatgcc tttcttgatg aaggctcagg aacaacgctt      2280
     cttgatcaag acctagccga tgcactgcag ctggatggta agcctaatcc gatatgcctt      2340
     cggtggaccg gtggcaccga gcggtgtgag aaaaactctt gtattgttcg tctacaagtc      2400
     gcggggcaac acgttggagc ggagaagttc acattagagg atgttcaaac agtaaaagag      2460
     ctcctgctgc cacgacagac actggatttc gatgaactaa aacatacgta tcattattta      2520
     gaaggtttgc ccattaaatc gtataccgat gctcgacctc gcattctgat cggaacgaag      2580
     catgcgcagc tgggtctgac actcaggagt cgagaaggta aattcggtga accaatcgca      2640
     accaagactc ggttagggtg gacaatctgt ggcaatttgg gatcaggaaa tgggccgagc      2700
     atgtttcatt acagtttcca cgtatgttca ttgaatgaac cgtctaatga tgatatgcac      2760
     caagcaatga aggactattt ttccatagac agcctaggag ttggcagttc ttcaaaatta      2820
     cttctatcag cagatgatca acgagctgag acattgctga cgtccctcac acgattctct      2880
     ggcgaccgct tcgagactgg cctgctctgg cgttatgaca acgtccgtct gcctgacagc      2940
     cggtcaatgg ccctgcgtcg tcacagatgc ctagaaaaac gcatggcaag cgatccacaa      3000
     cttgcagaag tactacaaca gaagatcgcc gactacagcg ctaagggtta catacgcaag      3060
     ctttccaaag atgaagtcca acagctctcc agcgactttt ggtatttgcc tgtttttccc      3120
     gtaacgaacc cgaacaaacc tgggaaagtc cgtatagttt gggatgctgc agctaaatcc      3180
     cacggtgtct cgttgaactc tgtccttttg aagggtcccg atttattatg ttctcttctt      3240
     gacattcttc tacgctttcg tcttcaccct gttgcagtaa caggggacat ccgcgagatg      3300
     ttccaccaag tgaagatacg tcaagaagac cagcagtatc aatgcttcta ttggacagat      3360
     gaaagtggag aactggtcgt ttatactatg acagtgatga ctttcggagc atgctgctct      3420
     ccgagcagtg cgcagtatgt caaaaacctt aatgcggagc gattcaaggc tgagtttcct      3480
     gcagcaagcg cagcgattac caaatctcac tatgtcgacg acatgttaat tagcgtccaa      3540
     acggaagaag aagcaatccg catcgcgaaa gaagttagct acgtgcacac tcagggcgga      3600
     ttcgagatcc gcaactggat aagtaattcc aggaatgttg tggaggcgct gcaagggcaa      3660
     aaagcggacc aacagaagag tttagacctg tcaactgaat tatcaaccga gaaagttcta      3720
     ggcatgtggt ggaatacgtc agtcgatgcc tttacgttta aagtaggctg gaatcgctat      3780
     gatcctgaac tgctcagatg tggtagacgt cccacaaaac gggaagtgct gcgtgtctta      3840
     atgactatat tcgacccgct tggactaatc gcccactttc tcgcttactt gaaagttctt      3900
     cttcaagacg tctggagatc aggtatcacc tgggacgaga aaattaacga cgatgaattc      3960
     aagaagtggc aggactggct gagcgtttta ccgcaagttg agcagctgca aattccaaga      4020
     tgtttttggc ctaagcatat aatccatgac gccgatgatg tacagcttca cacttttgta      4080
     gatgcaggac aaaatgggat ggctgctgca tgctacttgc gattctcatc cggggaaaac      4140
     atctattgtt cactagtaac agcgaaggct agagtggctc cgctgaagct aacatccatc      4200
     cctcgtctgg agttacaagc ggcagtcatc ggaacaagac tatcaagaac tgtgattgat      4260
     acactatcga tccgtatagt taagagactc tactggtccg actctcggga tgttctatgt      4320
     tggatcaact ccgaccacag gcgctatagc cagttcgtcg gctttcgggt tactgaaata      4380
     ctagagtcca ctgagtctca cgattggcga tacgtgccaa gcaagctgaa cgtagctgat      4440
     gacgctacca aatggcatgg gcttccagaa ctttccacgg acgacaggtg gtttcgaggc      4500
     ccaagttttc tctggcaaac cgcagaaaaa tggccaacgt cttccactca cactgaggta      4560
     acggacaccg agttgtcgac aagtttgcta gtccatcact cacccccaga tccaatcatt      4620
     cacgctcaaa acttctccag ctggaaacgg ctacaacatg tcatggcgct tgtgcagcga      4680
     ttcattacaa actgtcgcct aaagatacag aagaaaccca tcaaccgcgg acctcttacc      4740
     aaaagtgaaa tttgcatagc tgaagcgcat ctggtacgca ttgctcaact agaagaatac      4800
     ccggaagaac ttcgcatact ccaaagtaca ccacaacaag ccggaagctc aatgaagtta      4860
     cttccaaaat caagtcccct atacaagctt ctcccgtggg ttgacgaccg tggcattatg      4920
     cgaatgaaga ctcgtattgc tgcctgccag tttgcaactg aagatacgaa gaatcccatc      4980
     atccttccta gaaaacacca cattactacc ctaataataa accactacca caccaaatac      5040
     caccaccaga accatgaaac cgtaataaac gagctacgcc aaaaatacca aattgcccgt      5100
     ttacgctcat gctacagcca agtgcgccaa aagtgtcaaa gatgcagaaa cgatagagtt      5160
     gaaccgaaca taccacccat ggccgacctt ccacccggac gactggcagc gtattgtcaa      5220
     ccatttactc acgtgggcgt ggactatttc ggtcctatcg aagttgttgt gggtagaaga      5280
     catgaaaagc gctggggaat gttagcaacc tgcttgacta tccgagcggt gcacatcgag      5340
     atagttcatt cgcttagcac tgactcctgc attatggcca ttcggaattt tatcgctcgt      5400
     cgtggtcaac ctcgtaaatt ttatagtgac cgaggaacca acttcattgg ggcaaacaga      5460
     gagctgcaga acctccaggc ggcgatcaac cacgatgacg tgatgaaaga attcacgact      5520
     gctgaaacag agtgggtatt caaccctccg ctagcaccac atatgggcgg tagctgggaa      5580
     cgattaataa gatctgtcaa aagaaatcta ctagccgtct gctctaccaa ggtcctttct      5640
     gacgaagtat tgaggaatct gctgatagag atcgaaaacg ttgtgaattc tagacctttg      5700
     acgcacgtac cagttgatga agattctggt ccggccctaa caccaaacca ttttctggtt      5760
     ggctcctcca atggttcaaa acctcttgtc aacttcgacg acagcgtata cacactcaag      5820
     cagaatttgt gcacctcgca gatcctggca aatgcatatt ggaaacggtg ggtgactgat      5880
     tatttaccgg agattactcg ccggactaag tggttccagt caaccaaagc tatcacaact      5940
     ggagatgtcg tcgtgatcgt cgacccaaaa ttaccccgga actgctggcc aaagggaagg      6000
     atcatctcta caaaatccgg tcgtgacggt caagtgcgat cagcaaccgt gcagacatcc      6060
     accggagtgt acgagcgtcc tgtagcaaag ttggcagtcc tagatgttca gcgcgtggat      6120
     ccgtaagcca accggatgtt ggcgtaccct gggggag                               6157
//
ID   BEL-683_AA-LTR repbase;    DNA;    INV; 891 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-683_AA-I;
KW   BEL-683_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-891
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-891
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 276-276 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 891 BP; 319 A; 174 C; 151 G; 247 T; 0 other;
     tgttggccta tttcataagg ccgacgcgcg catctattcc catattgtct acagggctag        60
     caacactgca aaccatgtga cattacggcc gtcggaggag tgacaggtat ccaccttgtc       120
     accgggtgag tcagctaaaa actgaaaaca atagaaaaaa taggaaagca aggaatgcaa       180
     aggtgcagtg atgatcgtta tctaaaattg tgcttaaaac taatctataa tacgttgaat       240
     ttaacatata aacctagtga actaaaatat tatccttata cttagtatga acatgcttat       300
     caggtgagcc ttttgctttt aaaaactatg aaaactatct aatgaaaagt tgtaactaga       360
     taacctaaga tcacatatct gtattggaac taagggagtt gtcgatatac ctagcaaatc       420
     tgctcatcct gctcttgttc tataagctgc cgcaatcggt aagaaaactg ccaattgaac       480
     tatacagaca agctcttgaa atttatctta caactaaatc taggacttac gactaaatcg       540
     acaattatac ggactcttga ctgacataaa accgacaggt gaatacaaaa agggactaaa       600
     cgtaagtaaa actactatat acagaatatt agcttaaaag tacaatttgc acacacatat       660
     atgttggtca tagcctaaaa tataacacag gggttcaccc cacaaacact acggagcaca       720
     cttccgaata gacaaatatg tatcaaccaa ttccaacatt tacgttataa aaatgaaact       780
     tgttgtcctt ccttaggaaa attatattct tccctgatac tacggatccg gtgttttatt       840
     tccgaaggga gaatcataat tttggaaatt cccgttggat aaattccaac a                891
//
ID   BEL-684_AA-I repbase;    DNA;    INV; 6162 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-684_;
KW   BEL-684_AA-I; BEL-684_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6162
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6162
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 310-310 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..6128
FT                 /product="BEL-684_AA-I_1p"
FT                 /translation="MSSRDAHGSGKNVKVQKKGKSSKAKIEEVVNSGDVSI
FT                 VVTGVPEEISVTERTLAGRTCKSCKGPDSDEMVQCDNCDKWHHFGCVGVTE
FT                 EVADHSWSCPKCVSAKWVQRSGSTSSKQISPICDAKDSMSTQEPKTSIGSN
FT                 TKDQRSSAVDVVGGASIGTEPQGPKKSGNKVRQQVGDKVADISGASSALPS
FT                 SSSRRSSRTLLKLQMQKLEEEEKLAKDFLERKYALLEEAVSERSSKTSSKA
FT                 SSRASSSLSRIRDWVHGNNTQREGDMLNYPEVFDPERHSTQNPCKLAMFDQ
FT                 LAVPXDHSFSSRQDQWTNGGTYSIRAVSSGVRPTNSAGEVYSQRTSVDRTI
FT                 FAAQRGQEELTRQHVRIASAIGDPYVSDHIPYRPSCSRREPRVDEDFDDPC
FT                 PLSKKQLAARQAVSKDLPSFSGNPEDWPIFFSSYTNTTAMCGFTDAENAVR
FT                 LQKSLTGKAYDAVKSRLMHPSNVKGVMDTLRMRFGQPEAIVHSLVAKITAL
FT                 PSLKEDKLETIMDFAVEVQNFCAIVDACELEEHMYNVSLLHQLVSRLPPSI
FT                 KLDWARYRYTLPRVNLATFGNWIYSLAEAASTVTIPAIQEFKLSRNDSRPT
FT                 KKSSGFLNAHLESNETELKPDIDTARYDNDGCLVCKSSCKALWKCKQFLEL
FT                 SRDSRWAVVRDFDLCRRCLEKHNGGCKAKACGKNGCTRKHHELLHNENQKK
FT                 NQADPKNDEHQRQQPSTSSARHECNSHRSSSSSSLFRYLPVVLHGKGGCIQ
FT                 TFAFLDEGSKLTLMDKELADELELDGDESPLYLRWTGGTERCEKDSRAVSV
FT                 SIAGKFAGAKSFKLHDVRTVQGLQLPRQSLDAGKMVELFPYLRGLPIESYK
FT                 SARPRILIGLKHAHVSLVLQCREGKVEQPIAIKTRLGWTVCGGSDNENIPN
FT                 LVHYSFHIGARDDRLDEDLHQAMKEYFAFDSMGIVKPSQALLSSEDQRSSK
FT                 MLESLTHLNGNRYETGLLWRYDDIRLPDSRPMALRRYRLLEKRMANNPELG
FT                 KALDQKIEDYIAKGYIRKLSKEEEDRFVSRVRYLPVFPVFNPNKPGKIRIV
FT                 WDAAAIIFGVSLNSVLLKGPDQLCSLFSILLQFREHPIGLTGDIREMFHQI
FT                 QICEQDRSCQRFFWRDESGEAAVFEMGVMTFGACCSPSSAQFVKNLNAERF
FT                 IGKYPQAVEAIIKRHYVDDMLVSVKTEKEATDLAHQVRYIHGQGGFEIRNW
FT                 ISNSPAVLQSLGEDDVKTKNLDLSAEMTTEKVLGLWWCTEKDTFTYKVGWT
FT                 RYDEMLLQGKRRPTKREVLRVLMSIFDPLGLIAHFLIYLKVLLQEIWRSGA
FT                 QWDEEINDTLFAKWQQWLGVLPEVESVQIPRCYHIRNFPDCELHTFVDASE
FT                 NGFAAVSYLRFSNGNDVECTLVTAKTRVAPLKFQSIPRLELQAAVLGARLA
FT                 RTVAESVSIKATRRCFWTDSRDVLCWINSDHRRFTQFVAHRVSELLDSTEA
FT                 TEWRWVSTKDNVADDATKWQRRPDLNANSRWFKGPEFLWRSESNWPQQIGI
FT                 NMSTQEELRPHLVAHIESTAPAICLTNYSSWKRLTNVIGFLLRFSANCQRK
FT                 LQHHPIHTGPLCMEELSAAEKILIRQAQRDNFTXEVAILTRGQQISRNSSL
FT                 YKSTPFIDDNGILRMRGRTTACPFITEEAKNPIILPRDHHVTTLIISHYHN
FT                 KYHHLNQNTVVNELRQKYSIPRVRVSCAKVKRNCQRCKNEHAMPSAPIMAD
FT                 LPDARLAAYTRPFTHVGIDYFGPMEVAVGRRVEKRWGVLATCMTTRAVHIE
FT                 IAHSLSTDSCVMAIRNMIARRGIPRYIYCDRGTNFIGTSRELSRVEKELDL
FT                 ETMMREFITSETAWCFNPPMSPHMGGCWERLIRSVKNSLKFLNLSRRPSDE
FT                 VLRNALTEIENTLNSRPLTHVPIEDIAAPALTPNHVLLGTSNGSKPLTMLN
FT                 ESGTIVRQCWRTSQIIANQFWRRWIAEYLPEITRRTKWYNSGSPSVKIGDI
FT                 VVIVDSTFPRNCWPKGRVIATRPGRDGEIRSATVRTAAGVYERPVVKLAVL
FT                 DVIREEK"
XX
SQ   Sequence 6162 BP; 1778 A; 1392 C; 1527 G; 1461 T; 4 other;
     tattataatt ttcgtttata aattcggaaa tgtcgagtcg cgatgcgcac ggttccggga        60
     agaatgtcaa ggtgcagaaa aagggcaaga gctctaaagc aaaaatcgag gaagtggtga       120
     atagtggtga tgtatcgata gtggtcacgg gagttccgga ggagatttca gttacggagc       180
     gtacattagc tggtcgaact tgcaagtcat gtaaaggtcc ggatagtgac gagatggtgc       240
     agtgtgacaa ttgcgacaag tggcatcact ttggttgtgt aggagtaacg gaggaagtag       300
     cagatcatag ttggagctgt ccaaaatgcg tatctgcaaa atgggttcaa cggtcggggt       360
     ctacttccag caaacaaatc tcaccaatat gtgatgctaa agacagcatg agtacacaag       420
     aaccgaagac gtcaatcgga tcaaatacaa aagaccagcg aagttctgca gtggatgtcg       480
     tcggcggtgc aagtatcggc acagaaccac agggtccgaa gaagtccggc aacaaggttc       540
     gacaacaggt cggtgacaag gtagcggaca tcagtggtgc gtcgagtgct ctgccgtctt       600
     cttcgtcgcg aaggtcatct agaacacttc tgaagcttca aatgcagaaa ttggaggagg       660
     aagaaaaact tgctaaagat tttctcgaac gaaagtatgc cttactggaa gaagcagtaa       720
     gcgagaggag ttccaaaact agttctaaag caagttccag agctagtagt agcttgagcc       780
     gaatacgcga ttgggtacat ggtaacaata cgcaacgaga gggagatatg ctgaactacc       840
     ccgaagtatt cgatccagaa aggcattcta cacaaaaccc gtgtaaatta gcgatgtttg       900
     atcagctggc agtaccgaka gaccattcat tttcatcgcg acaggatcaa tggacaaacg       960
     gaggaaccta ttcgataaga gcggtctcta gtggagttag gccaacaaac tcggctggtg      1020
     aagtctacag tcaacgtaca tccgttgaca gaacaatatt tgcagcgcaa cgaggtcaag      1080
     aagagttaac acgtcaacac gtacggatag caagcgccat cggagatcca tacgtttccg      1140
     atcatattcc atatcgaccg tcctgctcta gaagagaacc aagagtcgac gaagattttg      1200
     atgacccatg tcctctctca aagaaacaac tggctgcgcg tcaagctgta tcgaaagacc      1260
     tgccaagttt ttcagggaat ccagaagatt ggcccatatt tttctcgtca tataccaata      1320
     caacagccat gtgcgggttc acggatgcag aaaatgcagt ccggttacag aaaagtctaa      1380
     caggaaaagc gtatgatgcg gttaagagtc gtttaatgca tccgtctaac gtgaaaggag      1440
     tcatggacac gttacgaatg agatttgggc agcctgaagc catcgtccac tcgctggtag      1500
     ccaaaattac agccctacct tcactgaagg aagacaaact tgaaacgatt atggattttg      1560
     cggtggaagt tcaaaacttt tgcgccatcg tagatgcgtg cgagttggaa gagcacatgt      1620
     ataatgtgtc gctgctgcac caactcgtgt ccagattgcc accatcaata aaactggatt      1680
     gggccagata ccgctatacg ttaccacgag tcaatctggc aacattcgga aactggatct      1740
     actctttggc cgaagcagcc agtactgtaa ctattccagc gattcaagaa ttcaagcttt      1800
     ctcggaacga ttcacgacca accaagaaaa gttctggatt tttgaacgct catctggaat      1860
     caaatgaaac agaactgaaa ccagacatcg acactgctcg atatgataac gacggatgcc      1920
     tagtttgcaa gtctagctgc aaagccttgt ggaaatgcaa acaatttttg gaattatcta      1980
     gagactctcg atgggccgta gtccgtgact tcgatttgtg tcgacgttgc ctggaaaaac      2040
     acaacggkgg atgtaaagcc aaagcttgtg ggaagaatgg ttgtacgcgt aaacaccacg      2100
     agttgcttca taacgaaaat caaaagaaaa accaagcgga tcccaagaac gatgaacatc      2160
     agcgacaaca accgtcgacg agttcggcac gacatgagtg caatagtcat cgatctagct      2220
     ccagcagttc tttatttcgt taccttccgg ttgtactcca tggaaaaggg gggtgtattc      2280
     aaacgtttgc cttcttggac gaaggttcaa agttgactct catggataaa gaacttgccg      2340
     atgaacttga gttggatgga gatgaaagtc ctttgtatct tcgatggact ggtggcaccg      2400
     agcgatgcga gaaagattct cgtgctgttt ctgtctcgat tgctggtaaa tttgccggag      2460
     cgaaaagttt caaattacat gatgtgcgga ctgtgcaggg tcttcagctg ccacgacaat      2520
     ccttggatgc tgggaagatg gtggaactgt ttccgtattt acggggctta ccaatagagt      2580
     cctataaatc tgcccgtccg cggattctga ttggactaaa gcacgcccac gtgagccttg      2640
     tgctgcaatg ccgagaggga aaagtggaac aaccaatagc tataaagacg cgattgggct      2700
     ggaccgtatg cggtggaagc gataacgaaa acataccaaa tttggtgcac tattcgttcc      2760
     atataggagc acgcgacgac cgcttggatg aagacctgca tcaggcaatg aaagaatact      2820
     tcgctttcga cagtatggga atagtaaaac cgagccaagc tttactttcc tcagaagacc      2880
     aaagaagtag caaaatgctk gaatcgttaa ctcatctcaa cggcaatcgt tacgagacag      2940
     gtttgctatg gcgctatgat gacatccgtc ttccggatag caggcctatg gcacttcgcc      3000
     gatatcgtct gctcgaaaag cgtatggcta ataatccaga acttggtaaa gccctggacc      3060
     agaaaattga ggactatatt gctaaaggat atattcgaaa actatccaaa gaggaagaag      3120
     atcgattcgt ttcccgggtc cggtatctac cagtatttcc agtgttcaat ccgaacaagc      3180
     cgggaaaaat acgaatagtt tgggacgcgg ctgctattat tttcggcgta tcattaaact      3240
     ccgttctcct aaagggtcca gatcagcttt gctcactgtt ctctatacta ctgcaattca      3300
     gggaacatcc gattgggctc accggtgaca tacgggaaat gtttcaccag atacaaatat      3360
     gtgaacagga tcggtcttgt cagcgctttt tctggagaga tgaatctggg gaagccgctg      3420
     ttttcgaaat gggtgtcatg accttcggag cgtgctgttc gcccagcagt gcgcagttcg      3480
     tgaaaaacct aaacgcggaa agattcattg gaaagtatcc acaagcggta gaagccatca      3540
     ttaaacggca ttacgtagat gatatgttag ttagtgtaaa gactgaaaaa gaggcgaccg      3600
     acctggcaca tcaggtcaga tatatccacg gtcaaggcgg ctttgagatc cgcaactgga      3660
     taagcaactc tccagcggtc ctgcagtcgt taggagagga tgatgtgaaa acaaaaaatc      3720
     tcgatctttc agccgagatg acaacagaaa aggttctagg actgtggtgg tgcactgaaa      3780
     aggatacgtt tacgtacaaa gtagggtgga cccgctacga cgagatgctt ctacaaggta      3840
     aacggcggcc cacaaaacga gaggtgctga gggtactcat gtcgattttc gaccctctcg      3900
     gcttgattgc tcacttcctg atttatctca aggtcctact gcaagaaatc tggcgctctg      3960
     gtgcccaatg ggatgaagaa attaacgata ccctatttgc gaaatggcaa caatggttgg      4020
     gagtgttgcc tgaagtagaa agcgtacaaa ttcctcgatg ctatcacatt cgaaattttc      4080
     ccgattgtga actacatact ttcgtcgacg caagtgaaaa cggatttgct gccgtttcgt      4140
     atttgagatt ttccaacggc aatgacgtcg aatgtacgct cgtaacagca aaaaccagag      4200
     tcgctccatt gaaatttcag tcaattccca ggctcgagtt acaggccgca gttctcggag      4260
     cgagacttgc tcgaacagtc gctgagtcag tgtccatcaa agcaactcga cgctgctttt      4320
     ggaccgattc tcgggacgta ctgtgttgga taaactcaga tcaccgtcgt ttcacacagt      4380
     tcgtagcgca ccgagttagt gagcttctcg actccacgga agcaactgag tggcgctggg      4440
     tatcaactaa ggataatgta gcggacgatg caacgaagtg gcagagacgt cccgatctta      4500
     acgctaacag cagatggttc aaaggccccg agttcctttg gagaagtgaa tccaactggc      4560
     cacagcaaat tggaatcaac atgtctacac aagaagaact ccgtccacat ctggttgcgc      4620
     acatcgaatc gacggcacct gcaatttgtc tgaccaacta ttccagctgg aagcgtctaa      4680
     ccaacgttat cggatttctg ctccgttttt cggccaattg tcaacgtaaa ttacagcatc      4740
     acccaatcca cactggtcca ttgtgtatgg aggagctaag tgcagccgaa aaaatcctca      4800
     tacgccaagc tcaaagggat aacttcaccg akgaggtcgc tatcctaact cgaggtcaac      4860
     aaatctcacg gaacagttcg ctttataaat ctactccttt catcgatgat aatgggatcc      4920
     tgcgcatgcg tggtcgtact accgcttgtc ccttcatcac agaagaagcg aaaaacccta      4980
     ttatcctacc ccgtgaccac cacgtaacca ctttaatcat cagccactac cataacaaat      5040
     atcatcatct caaccaaaac accgtagtca atgaacttcg tcagaagtac tcaattcctc      5100
     gagtacgtgt ttcatgtgcc aaggtgaaac gaaattgcca gcgctgcaaa aacgaacatg      5160
     ccatgccgag cgctcccata atggcagatc ttcccgatgc caggttagct gcctacactc      5220
     gacctttcac tcacgtggga atcgactatt ttgggccaat ggaagtcgca gtcggtcgta      5280
     gagttgagaa acgctgggga gtgttggcta catgtatgac tacgcgagca gtgcacattg      5340
     agatagcaca ttcgctcagt acagactctt gcgtaatggc tattcgtaat atgatcgctc      5400
     gccgtggaat tcctcgttac atatactgcg accgaggaac gaactttatt ggtacaagca      5460
     gagagttgag ccgcgtcgag aaggagctcg accttgagac tatgatgagg gagtttatca      5520
     cttcagaaac cgcctggtgc ttcaatccgc ctatgtcgcc gcatatgggt gggtgttggg      5580
     agcgacttat ccgcagtgtg aagaacagtc tgaagtttct aaacctatca cgtcgaccat      5640
     cagatgaagt tctacgcaac gccctgaccg aaatcgagaa cactcttaat tcgaggccac      5700
     ttacgcacgt gccgattgaa gacatcgctg ctcctgccct cacccctaat catgttttgt      5760
     taggcacttc aaatgggtca aaaccactca caatgctcaa cgaaagtggt acaatcgtac      5820
     gtcagtgctg gcgaacttct cagattatcg ccaatcagtt ctggagaaga tggatagctg      5880
     agtatctacc ggagattact aggaggacaa aatggtacaa ttccggttcg ccatcagtaa      5940
     agatcggcga catagttgta attgtggact caacatttcc tcgcaactgt tggcctaagg      6000
     gcagggtgat cgcaacgcgc cctggccgag atggagaaat tagatcagcg acggtgcgga      6060
     ctgctgctgg cgtctacgaa aggccggtgg ttaagctagc tgtactagat gttatacgcg      6120
     aagagaagta gtcgatcagg aggtcgacgt acccgggggg ag                         6162
//
ID   BEL-684_AA-LTR repbase;    DNA;    INV; 759 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-684_AA-I;
KW   BEL-684_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-759
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-759
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 277-277 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 759 BP; 257 A; 142 C; 136 G; 224 T; 0 other;
     tgttggcaaa ccctttgttg ccagcgcgca ccttctatac agcaaccctg aaccacacac        60
     ctgtttacgc cgagatgaca ggtaatgcca aaggctgtca attggtgagt aaacatccga       120
     aggaaaacat aaagaggaaa gtgagtttgc ttattttagt cgtgaattat tacctggaat       180
     acgagtgaat ttctttgatt atttctattt catcattcta aagccgtgaa gtattattat       240
     ttaaggtaat tgctatatat attacgaata cctgaagtct aaaactagtg gttctataat       300
     aggcgaattt gatgttcctg tgacagtggt cataaccata aacctattga ataagttgca       360
     attctgcatc aactgcaacg gtaaggaact atttgtagag gttttttcaa tagctaataa       420
     tgaattaact atccagtatc ccaaaccgct gccaaaccta cgacccgaag actacgactc       480
     aaactgacta gctaggggac taaacgtaag tgaactatga ctattacaaa aattgacatg       540
     cactgaccaa ataaacatat aagacataaa ttatactaaa ttacgacgct atgtaaatgc       600
     aactaaaact aatagaatgt gtattgtatc tgttaccatt caggaaaatt ataacttacc       660
     gtataattac gttcaattac tgcgtttcat tcaacggtgg ttatagttgc ggaaattaac       720
     ccttgcagta ccagtgctgg ttggttcgga aaaccaaca                              759
//
ID   BEL-685_AA-I repbase;    DNA;    INV; 6144 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-685_;
KW   BEL-685_AA-I; BEL-685_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6144
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6144
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..6119
FT                 /product="BEL-685_AA-I_1p"
FT                 /translation="MSGRKGGKDGKSGSKGTRSKEKQSEVIDISGEANVVV
FT                 VVTEEGKDSSGHHKDHEQDTDQSCTFCQGSDNDEMVQCDKCDRWIHFACVG
FT                 VTEEIADKSWSCPKCVATTGIQQPLSSAINRLQIGSSSRIGLQKSAVLKDQ
FT                 PNPKAALGIGENVRCHTLSEPIGKTGPSPRAVPRDKSAASLTSSSSSSRMS
FT                 LLQLQLQRLEEEREYEKQQAEKHRAYLDKKYELLEQMHSRAGSEYSGSQNR
FT                 VKQWVQDTNNVHTGNALDPRSTEVFEPQRHSTQRYSGQVQIGSTQPANRSC
FT                 HSEVQIDEFDVRRDRRREQPPGTFSIARSCGESRGQTSRHPRRTCREIEFH
FT                 SNRQEEDFEPFSFSRQQLAARQGISKDLPKFSGKFEEWPVFMSMFNSTTNM
FT                 CGFTNEENLIRLQKSLEGKAYETARSLLMHPSNVPAIMRTLKMRFGQPEAV
FT                 VHALIQRVNSLPPIREDKLETLVEFAVNVQNFCATVDAYELDDYMYNVSLL
FT                 HQLVNKLPATLKLDWARHRQTLQRVNLATFGNWVYSLAEAASTVVIPADAH
FT                 EPSSSRNEGRGNKKSNAFLNAHSETLSEPCDGPKAVNIEEGDRAQVPKQLT
FT                 KICEDCVVCKGGCKILSKCKQFLELSRESKWAIVREFRFCRSCLRRHKGGC
FT                 DAKPCGRNGCTYKHHELLHNDQRTPQNPNNSASVTSSTSSSIVSVPRQTSV
FT                 AVEVATHDCNTHQSKSNALLFRYLPVVLSGPQGSIHTYAFLDEGSHLSLID
FT                 QELADQLKLKGTTIPLCLRWTGGTQRCEKDSQSVTVDIAGTGKTSNSFQLA
FT                 GVRTVEELLLPHQTLNVEEMGHQYPHLKGLPIDSYYDARPRILIGMKHVQV
FT                 SLVLKSREGNIGEPVAVKTRLGWTVCGGGNSRTDSADNLVHYTFHVCSCER
FT                 TSDDELHQAVKKHFTLDSIGITKPEKLLLSAEDQRAQDLLEQLTSYDGYRY
FT                 TTGLLWRHDNTRLPDNYAMALRRHHCLQKRLDRDSELAATLQEMIADYVSK
FT                 GYVRELSENEVSQQSSRVWYLPVFPVVNPNKPGKVRLVWDCAACSFGVSLN
FT                 SALLKGPDQLCSLLAILMQFRENRVGLTGDIKEMFHQVRIQKEDQQCQRFL
FT                 WQNEHGDVVTYVMQVMTFGACCSPSCAQYVKNLNAERQSGEFPKAAEVIQK
FT                 KHYVDDMLVSLETDEEAVKVAKDVKHVHQQGGFEIRNWVSNSPNVLQALNE
FT                 SGINEKDLDLSAEISTEKVLGMWWCTSSDTFTYKVGWKRYDRALLEGHRRP
FT                 TKREVLRVLMSIFDPLGIIAHFLMYLKVLLQQIWRSGVQWDQEITNDSFTK
FT                 WQHWLKLLPQVEQVEVPRCYRSSIQKPEEAELHIFADASETGMSAVAFLRF
FT                 VTQETVECRIVVAKTRVAPLKFVSIPRLELQAAVIGTRLAHTIIDSLSIKI
FT                 TKKYYWTDSRDVLCWLNSDHRRYTQFVAFRVSEILETTETYEWYWVPSKMN
FT                 VADDGTKWSPRPDLSPDSRWFVGPEFLRLREKDWPRQPTKNASTEEELRPS
FT                 FLAYHAPCDSTIDPKEFSSWKRMLNVTAFVFRFITNCQHKLCKKQKIIGPL
FT                 TAEELVSAEAYILRSAQRDGYPEEMAHLEKSQHNTNSPKPIPKQSSLYQLT
FT                 PWLDSKGLMRMRTRIAACQYATENAKKPIILPRDHPTTNLIIQHYHQQFHH
FT                 QNHESVINELRQKFSISHIRAAYTKIRKNCQRCKIDQADPRPPIMADLPTA
FT                 RLAAYSPPFTHTGLDFFGPYEVAVGRRIEKRWGMLATCLTVRAIHIEVVHS
FT                 LTTDSCIIAIRNFIARRGTPSVFYSDRGTNFVGAARQLKEAAAAVNVDEVM
FT                 REFVTVDTTWSFNPPLAPHMGGSWERLIGSVKRNLQSINPPRNPTDEVLRN
FT                 LLIEVENIINSRPLTHVPINDDCAPALTPNHFLLGSSNGIKPFSTIDESSS
FT                 AIRQNILASQMLANTFWKRWLSDYLPEITKRSKWFVRTNPVAVGDVVVIAD
FT                 PKLPRNCWPKGKIIEVHPGKDGEIRSATVRTSTGVYIRAVTKLAVLDVRRD
FT                 GCKPA"
XX
SQ   Sequence 6144 BP; 1782 A; 1459 C; 1469 G; 1434 T; 0 other;
     agttataaat tccgtttacg cgaacgatgt cgggtcggaa aggtggaaag gatggtaaaa        60
     gcggttcgaa aggtacgcga tcaaaggaaa aacagtctga agtgattgat atcagtggtg       120
     aggctaatgt agtggtggtg gttaccgaag aaggaaagga ttcatccgga catcacaagg       180
     atcacgaaca agatacggat cagagctgta cgttctgcca ggggtcagac aacgacgaga       240
     tggttcaatg cgacaagtgt gacagatgga ttcattttgc ttgtgttggt gtcacagaag       300
     aaatcgcgga taagagctgg agttgtccca aatgtgttgc tactaccggg atccagcaac       360
     ctctttcttc tgctataaat cgccttcaga ttggatcatc aagccgtata ggactacaga       420
     agtcagccgt gctgaaagat cagcccaatc caaaagctgc gcttgggatt ggtgaaaacg       480
     tacgctgcca tacgctttct gagccaatag gaaagacagg tccttctcct agagctgtac       540
     ctcgcgataa gtcggctgct tcactgacat catcatcatc atcatcgcga atgtctctcc       600
     tgcaactgca gttacaacgg cttgaggaag aacgtgaata cgagaagcag caagcggaaa       660
     agcatcgagc ctacttggac aagaaatatg agttattaga acagatgcac agccgtgccg       720
     gatccgaata cagtggttca caaaatcgag tcaaacagtg ggttcaagat acgaacaatg       780
     tccacacggg aaatgcattg gatcctcgaa gcacagaagt ctttgaacca cagagacatt       840
     cgacgcagcg ctactccgga caagtacaaa ttggttccac tcagccggct aatcgatcct       900
     gccatagtga ggtccagatt gacgagtttg atgtgcgtcg tgatcgtcgt cgtgaacaac       960
     cccctggaac attttctatt gccagaagct gcggagaatc acgtggacaa accagtcgtc      1020
     atccaagaag aacctgccga gaaatagaat tccattcgaa tcgccaagaa gaagatttcg      1080
     agccattttc gttttcacgt cagcagttgg cagcacgcca aggaatctcc aaagacttgc      1140
     ccaaattctc cggcaagttc gaggagtggc cagttttcat gtcaatgttt aacagcacga      1200
     ccaatatgtg cggctttacg aacgaggaaa atcttattcg gcttcagaaa tccttggaag      1260
     ggaaggcata tgaaacggcg cggagtttat tgatgcatcc atcgaatgtt ccagctatta      1320
     tgcgtacctt gaaaatgcga ttcggtcaac ccgaggctgt cgtccacgct ctgatccaaa      1380
     gggtaaacag cttaccacca atacgcgagg acaaactaga aacgttggtc gagtttgcag      1440
     tgaacgtgca aaatttttgc gctacggtag atgcgtacga gcttgatgac tatatgtaca      1500
     atgtctccct tctccaccaa ttagtgaaca agcttccagc gacgctaaaa ttagactggg      1560
     caagacatcg acaaactctc cagcgtgtca acctggcgac ctttggaaat tgggtgtatt      1620
     ctttggccga ggcagctagc accgttgtga tcccggctga tgcacatgag ccaagttcat      1680
     cgcgtaatga aggacgagga aacaaaaaat caaacgcctt tctgaatgct cattctgaga      1740
     cactttcaga gccatgtgat ggtccaaagg ccgtcaatat agaagaaggc gaccgtgcgc      1800
     aagtcccgaa acagttgacc aaaatctgcg aggactgtgt ggtatgcaaa ggaggttgca      1860
     aaatcctttc taagtgcaag caatttctgg agctgtcccg tgaatctaaa tgggccatcg      1920
     taagggaatt cagattctgc cgaagttgtc tacgccgaca taaaggtgga tgcgatgcta      1980
     aaccgtgtgg tcgaaatgga tgtacttata aacaccatga attacttcac aacgaccaga      2040
     gaactcctca gaaccccaac aactcggcat cagtaacatc atcaacatca tcgtctatag      2100
     tttcagttcc aaggcagacg tccgttgctg tggaagtcgc aacacatgat tgcaatactc      2160
     accaatcaaa atccaatgcg ctactgttcc ggtacctacc tgtggtactc agtgggcctc      2220
     aaggttccat ccacacctac gctttcctgg atgaaggctc ccacctgagc ttaatagatc      2280
     aagaactggc ggaccagctc aagttaaagg gtacgactat accattgtgc cttcgctgga      2340
     cgggaggaac acagcgatgt gaaaaagatt cgcaatcagt tacagtcgat atcgctggga      2400
     caggtaaaac gtccaatagt ttccaactag ccggagtgag aacagttgag gagctgttgc      2460
     ttccacacca gacgctcaat gtagaggaaa tgggacatca atatccacat ctgaagggac      2520
     ttcccatcga ttcatactac gacgctcggc caagaatcct catcggaatg aagcacgttc      2580
     aagttagtct tgtattgaag agtagagaag gaaatattgg cgaaccagta gctgttaaaa      2640
     cgcggttggg ttggacagta tgcggcggag gaaattcacg aacagacagc gcagataatc      2700
     tggtacatta taccttccat gtatgctcgt gtgaacgaac gagcgatgat gagttacatc      2760
     aggccgttaa aaagcatttt acgctagata gtatcggcat cacaaaaccg gaaaaactcc      2820
     ttctctctgc tgaggatcaa cgagctcagg atcttttgga gcaattgacc agttatgacg      2880
     ggtatcgata cactactgga ctgttgtggc gtcacgataa cacccgcttg ccagataact      2940
     atgcaatggc attacgaagg caccactgtc tacaaaagcg tctagatagg gattcagaac      3000
     tagctgcgac attgcaagaa atgatagcgg attatgtatc caaaggatat gtccgagaac      3060
     tctcggaaaa tgaagttagt cagcagtctt cccgagtgtg gtacctccca gtattcccgg      3120
     ttgtaaaccc aaataagcca ggcaaggtac ggctggtttg ggactgtgca gcgtgctcct      3180
     tcggcgtttc gttgaattcc gccctgctaa agggaccgga tcagctctgt tcattgctag      3240
     ccatattgat gcaatttcgt gaaaatagag ttggccttac cggagacata aaggaaatgt      3300
     ttcatcaggt gcgcattcaa aaagaagatc agcaatgtca acgctttttg tggcagaacg      3360
     agcatggaga cgtcgtaacc tacgtgatgc aggttatgac ctttggagcc tgttgctccc      3420
     ccagctgtgc gcaatatgtt aaaaacctta atgcagagcg ccaatcagga gaatttccca      3480
     aagctgcaga agtaatccaa aagaaacact acgtggatga catgctagtc agcctggaaa      3540
     cagatgaaga agcagtaaaa gtagcgaaag atgtaaaaca cgtccatcaa caaggtggat      3600
     ttgaaattcg taattgggtc agtaactctc caaatgttct acaagcgcta aacgaaagcg      3660
     ggattaacga gaaagacctg gacttgtccg cagaaatcag caccgagaag gttttgggaa      3720
     tgtggtggtg tacctcttca gatacattca cctataaagt cggatggaag cgttacgatc      3780
     gcgctctcct agaaggccat aggcgtccca ccaagcgaga agttcttcgg gtgctaatgt      3840
     ccattttcga cccccttggg ataatcgctc actttctgat gtatctgaaa gtgcttttac      3900
     aacaaatatg gcgctccggg gtacagtggg accaggagat aaccaatgac tcgtttacaa      3960
     aatggcagca ctggctaaag ttattgcctc aagttgaaca agttgaagtt cccaggtgct      4020
     acagatcatc aatccagaaa cctgaggaag ccgagctcca catatttgct gatgccagtg      4080
     aaaccggaat gtctgccgtt gccttcctgc gatttgtgac gcaagagact gtcgaatgta      4140
     gaatcgttgt agcgaagact agagttgcac cactgaaatt cgtctccatt cctcgattag      4200
     aactacaggc tgcagtaatc ggtactaggc tggcccatac gatcattgac tcgctgtcca      4260
     taaaaataac taaaaagtac tattggaccg attctcgtga tgtactctgt tggttgaact      4320
     ctgaccaccg gcgatacaca cagtttgtgg ctttccgtgt aagtgaaatt ttggagacaa      4380
     cggaaacata tgaatggtac tgggtaccat ccaagatgaa tgtggctgac gacggtacca      4440
     agtggagccc tcggccggat ctctctcctg acagcagatg gtttgtaggc ccagaattct      4500
     tacgtcttcg tgaaaaagac tggcctcggc agcccacgaa gaacgcttct acagaagaag      4560
     aacttcgtcc cagtttcctt gcgtatcacg ccccctgcga ctctacaatc gatccaaaag      4620
     aattttctag ttggaagcgt atgttgaacg tcactgcctt tgtcttccga ttcattacta      4680
     actgtcagca taaactatgc aaaaaacaaa agattattgg cccccttacc gcggaagaac      4740
     tagtttctgc tgaggcctac atcctgcgtt ctgctcaaag agacggttat ccagaagaaa      4800
     tggcacattt ggaaaagtca cagcataaca ccaatagccc aaaacctatt cctaaacaga      4860
     gcagccttta ccagttaacg ccatggctag atagcaaagg actaatgcga atgcggacaa      4920
     ggattgcagc ctgccaatac gccacagaaa acgccaagaa accaattatt ttgcctcgtg      4980
     accaccccac caccaacttg ataattcagc actaccacca acagttccat catcaaaatc      5040
     acgagtcagt gattaatgaa ctgcgtcaaa aattcagcat ttcacacatc cgtgcagcgt      5100
     acactaaaat aaggaagaac tgtcaacgat gtaagattga tcaagctgat ccacgcccac      5160
     cgatcatggc cgaccttccg actgcccggc ttgcagcgta ttcaccgccg ttcacacaca      5220
     caggcctcga cttcttcgga ccctatgagg tcgccgtagg acggcgaatt gaaaaacgat      5280
     ggggaatgct cgctacgtgc ctgacagttc gggcgattca tatagaagtt gtacattcct      5340
     taaccactga ttcctgcata atagcgatac gcaacttcat tgcacgtcgc ggcacgccca      5400
     gcgtattcta ctctgatagg gggacaaatt tcgtcggagc ggctcgccaa cttaaagaag      5460
     ccgccgcagc agttaacgta gatgaagtaa tgagggaatt cgtcaccgtc gatacaacct      5520
     ggtcgttcaa cccgcctctc gcaccacaca tgggtggcag ttgggaacga ctgataggca      5580
     gcgtaaagcg aaatcttcag tctatcaatc cgccacgaaa tccaaccgat gaggtgctgc      5640
     ggaacttact gattgaagtt gaaaatatta tcaactccag gccgttaacc catgttccga      5700
     ttaacgatga ctgcgctccc gctttaactc cgaaccattt cttgcttggc tcttcaaatg      5760
     gaatcaagcc attctccact atcgacgaga gcagttccgc tatccgacaa aacatcctag      5820
     cttcgcagat gttagccaac acgttctgga agcgttggct aagtgactat ctgccggaaa      5880
     tcaccaagcg gtctaagtgg ttcgttcgaa ccaatccagt tgccgtaggt gatgtggttg      5940
     tgatagcaga tcccaaacta ccccgtaatt gctggcctaa ggggaaaatc atcgaagttc      6000
     atccgggtaa agatggagaa attcgttcag ccacggtacg aacatccact ggagtgtaca      6060
     ttcgggcggt caccaaactt gcggttctgg acgttaggcg cgatggatgt aagccagcct      6120
     gaacactggc gtacctgggg ggag                                             6144
//
ID   BEL-685_AA-LTR repbase;    DNA;    INV; 752 BP.
XX
AC   .
XX
DT   26-NOV-2018 (Rel. 24.02, Created)
DT   26-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-685_AA-I;
KW   BEL-685_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-752
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-752
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 291-291 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 752 BP; 266 A; 145 C; 122 G; 218 T; 1 other;
     tgtgaactgt cctattgaac agtgcgcgcc cattatgttt ctgcctcagt aacagctata        60
     ccgttgctat tctggcgaca ctggattgga gtgacagagc taccgcctgt cacaagcgtg       120
     agtcagaatt aaaacaaatg aagaaagaag tgaattgcca cgttattgaa agtttacaat       180
     ctagtttact agctaaaata ttttataaat cttagtgaac tatatgaaat tgaaaggtaa       240
     tcctatgaat tatgaactta tacaaactgc tgataaatta atgctattta gactaagact       300
     attgacgaca cgaacttacg taatcagcac accgagactg ttaacctata tctaatcttg       360
     tatcgaatcc ggtaagctat gcaaatctat agaatttctt cctaaaacta aataactaaa       420
     taatgaacta ttatagctta cccactaaaa accaacaagg ttgacccaat caccggagct       480
     aaaatacgat agggaaacta aacgtaagtt gactatttac tattctaatg tagatttcat       540
     tgcctgaatc agtgaatcta aaactattta kactacaact atgcgctaaa tcgagttatt       600
     aacaattccg ttcttaaact ttgtgttatt ccatgcaggg aatttataaa ctcccaataa       660
     aagagccgtg aatacaaatt gctctggagc ttacagattc gaaaaatccc cctatcagtc       720
     cggtaaaacg ctagtcgaag cgaatttcga ca                                     752
//
ID   BEL-686_AA-I repbase;    DNA;    INV; 6128 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-686_;
KW   BEL-686_AA-I; BEL-686_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6128
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 311-311 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..6094
FT                 /product="BEL-686_AA-I_1p"
FT                 /translation="MSSREQHGSGKIVKVQKKGKSSKSQVDDVVNSDDVSI
FT                 VVTGVPEDRSIADRTIAGRTCKSCRGPDNDEMVQCDNCDKWHHFGCVGVSE
FT                 EVADHSWSCPKCVSAKWAQRSRSTSSKQLQPSDGAKDGMDTRGSQMLKGPR
FT                 EKDQLSSTGDVVDNPIIGLEENDPTDTKSKKRQQASNQTVASSVASSNVST
FT                 SSRKSSRTLLKLQMQKLEEEQRLAKVFLDRKYAILEEAASERSSRSSSRAS
FT                 SKNSCSMSRVCKWVNGDNTRRKEEDVLSHQDLFDPDRHSTQRPSMLASLNH
FT                 QFQDQMTIGRTFSMRAMSSGAAAPVVGLCNSQRSAADRIVNPSLRDRPCGY
FT                 HQYAPTSNAVGNHHYSDRTQLRQPQSRRETRCEEDLEDPWTLTKKQLAARQ
FT                 AISKDLPNFSGNPEEWPIFLSSYTNTTAMCGFTDAENAVRLQKSLTGKAYA
FT                 AVKSRLMHPSNVSGVIETLRMRFGQPEAIVHSLIAKITALPSLREDKLETI
FT                 MDFAVEVQNFCAIVDACELEEHMYNVSLLHQLVCRLPPSIKLDWARYRHTL
FT                 PRVNLSTFGNWIYSLAEAASTVTIPGIPESKSTRIEPRTAKKNAGFLNAHL
FT                 EPTEAELNVQFEPARKNMVECPICKSSCNEIEKCKQFLELPRDSRWAVVRD
FT                 FDLCRRCLGKHNGGCRAKACGIDGCTRKHHELLHNENQSKKAVPTNDISQR
FT                 EEQGTSSARHECNNHSNSNNSLFRYLPVILHGKSGYVQTFAFLDEGSKLTL
FT                 MDQELADELDLDGVESPLYLRWTGGTERCETDSRVISLSIAGTYDGAKKYN
FT                 LDEVRTVKELQLPQQSLDVKKMKEQYPYLRKLPIESYDGAQPRILIGLKHA
FT                 HVSIVLQCREGKLDQPIAIKTRLGWTVCGGGADENAPNMVHYSFHIGSRND
FT                 HSDEDLHQAMKEYFTLDSLGVVKSSVALLSTEDQRSCKMLESLTNFNGERY
FT                 ETGLLWRYDDIRLPDSRSMALRRFRLLEKRMTKDPDLAKALNQKIAEYLAK
FT                 GYIRELTKEEEDRPVSRAWYLPVFPVFNPNKPGKIRIVWDAAATIFGVSLN
FT                 SVLLKGPDQIGSLFGILLQFREHQIGLTGDIREMFHQIQIVEQDRACQRFF
FT                 WNNDSGETVVFEMSVMTFGACCSPSTAQFVKNLNAERFIGKFPQAVDAILK
FT                 RHYVDDMLVSVKTEEEAVRIAQQVKHIHSQGGFEIRNWISNSPAVLLALGE
FT                 EDAKIKNLDLSAEMATEKVLGLWWCTEKDTFTYRVGWTRYDEALLTGQRRP
FT                 TKREVLKVLMSIFDPLGLIAHLLIYLKVLLQEIWRSGTQWDEEINDTLFLK
FT                 WQTWLRVLPEVESVQIPRCYYPENISNCKVELHTFVDASETGFAAVSYLRF
FT                 SNGNEVRSILVTAKTRVAPLKFQSIPRLELQAAVLGARLAQTITESLSIQA
FT                 HRRCFWTDSRDVLCWINSDHRRFTQFVAHRVSELLDTTETSEWRWVPTKQN
FT                 VADEATKWQGRPDLAANSRWFNGPEFLRRDELDWPQQSQIFKTTLEEIRPH
FT                 LLAHISTESPALRLVEYSSWKRVVSVIGYLRRFVENCRRKLQHHRILTGSL
FT                 LMEEIRAAEDFLFRQAQQDTFAEEIATLIQGRQIPRSSSLFKSTPFVDEKG
FT                 ILRVRGRTTGCAFITEETKNPIILPRNHHITTLLISHYHDKYHHLNQETVV
FT                 NELRQKFSIPRLRVSCSKVRRNCQRCKNDQARPSFPIMADLPDARLAAYSR
FT                 PFTHVGIDYFGPMEIAIGRRVEKRWGMLATCMTTRAVHIEIAHTLSTDSCV
FT                 MAIRNMIARRGIPRYIYCDRGTNFVGTSKELSRVEEELNVEVMMKEFTSSE
FT                 TVWSFNPPLSPHMGGCWERLIRSVKNSLKSLKLPRRPTDEVLRNALIEIEN
FT                 TLNSRPLTHVSIEDTAAPALTPNHILLGTSNGTKPLSTMDDSAAAVRQCWR
FT                 TSQVIANQFWKRWIAEYLPEITRRTKWYNSSGQPVKIGDIVVIVDSTFPRN
FT                 CWPKGRVIATRPGRDGEVRSATVRTMTGVYERPVIKLAVLDVRREKE"
XX
SQ   Sequence 6128 BP; 1763 A; 1367 C; 1558 G; 1440 T; 0 other;
     atttataatt atcgtttata ttacggaaat gtcgagtcgc gaacagcacg gttccgggaa        60
     aattgtcaag gtgcaaaaaa aaggaaaaag ctcaaaatca caagttgatg atgtggttaa       120
     cagtgatgat gtgtcgatag tggtcacggg agttccggag gatagatcaa tagcggatcg       180
     tacaatagct ggtcggacat gtaaatcctg cagaggtcca gataacgacg agatggttca       240
     gtgcgacaat tgcgataagt ggcaccactt cggttgtgtt ggagtatcag aagaagtagc       300
     agatcatagt tggagctgtc caaagtgcgt ttcggcaaag tgggcccaac gatctagatc       360
     gacttccagc aaacaacttc aaccatcgga tggcgccaag gacggcatgg acacacgtgg       420
     atcgcagatg ttgaaaggac cgagggagaa agatcagtta agttccacag gagatgttgt       480
     cgataatcca atcattgggt tagaggagaa cgatccaacg gatacgaaga gcaagaaacg       540
     acaacaagcc agcaatcaga ccgtagccag tagcgtagcg tccagtaatg tatcaacgtc       600
     atcacgcaag tcctcgcgaa cacttctgaa gctccaaatg cagaaactgg aagaagaaca       660
     aaggttggct aaagtatttt tggacagaaa gtatgccata ctggaggaag cagccagcga       720
     gaggagttct agatcgagtt ccagggcgag ctccaaaaat agttgcagca tgagcagggt       780
     gtgcaaatgg gtgaatggcg ataatactcg gcgaaaagaa gaagatgtgc tgagtcatca       840
     agacttgttc gatccagatc gacactccac gcagagacca agtatgttgg ctagcttgaa       900
     tcatcagttt caagatcaaa tgacaattgg cagaaccttt tctatgagag caatgtccag       960
     tggcgctgca gcaccagtgg taggattgtg caattcacaa cgttcagctg ccgatagaat      1020
     tgtgaatcct tcgttgcgtg accggccgtg tggctatcac caatacgccc caacatctaa      1080
     cgcggtggga aaccatcact actccgatcg tactcagttg cgtcagccac agtctagaag      1140
     agaaacccga tgtgaagaag acctagaaga tccttggact ctcacaaaga agcagttggc      1200
     agcgcgtcaa gctatatcga aagacctacc aaacttctca gggaatcctg aagaatggcc      1260
     catatttctc tcttcgtaca ctaacacaac agccatgtgt gggtttacgg atgcagaaaa      1320
     tgcggttcga ctacaaaaga gcctgactgg aaaggcgtat gcagctgtaa agagtcggtt      1380
     gatgcatcct tccaacgtga gcggtgttat cgagacactt cgcatgaggt tcggccaacc      1440
     ggaagcgata gttcattcgc ttattgcaaa gattacagct cttccctctt tgagagaaga      1500
     taagctcgag acaataatgg acttcgctgt ggaagttcaa aacttctgtg ctatcgtaga      1560
     tgcgtgtgag ctggaagaac acatgtacaa tgtgtctttg ctgcatcagc tcgtttgtag      1620
     actgccacca tccattaagc tggattgggc caggtatcgt catacgcttc cgagagtaaa      1680
     tttgtctact ttcggaaact ggatctactc cctggcagaa gctgccagta ccgtcacaat      1740
     ccctggaatt ccagaatcaa aatcaacgcg aatcgagccg cgcacggcta aaaaaaatgc      1800
     tgggtttctt aatgcacatt tggagccaac tgaagcggaa ctgaatgtac agtttgagcc      1860
     cgctcgaaag aatatggtgg aatgtccgat ctgcaagtcc agctgtaacg aaattgagaa      1920
     atgtaaacag tttttggaat tgcctagaga ttcacgatgg gcagtagtgc gtgattttga      1980
     tctgtgtcga cgttgtctgg ggaaacacaa tggtggatgc agggcaaaag cctgcggcat      2040
     agatggttgt acacggaagc atcatgagct ccttcataac gagaatcaaa gcaagaaagc      2100
     ggttccaacg aacgacataa gccagcgaga agagcaaggg acgagctcgg ctcggcatga      2160
     gtgcaacaac cattctaact ccaataattc gctgtttcgc taccttccgg ttatactcca      2220
     tggtaagagt gggtacgtgc agacgtttgc ctttttagac gaaggttcta agttgacact      2280
     aatggaccaa gagctcgcag acgagttaga tttggatggt gtggaaagtc ccctttacct      2340
     tcgatggact ggcggcaccg agcgatgcga gacagattcc cgtgttatca gtctttcaat      2400
     cgcaggcacg tacgacggag cgaagaagta caatcttgat gaggtgcgaa cagtaaagga      2460
     gctacagcta ccacagcagt ctctggatgt taagaagatg aaggaacagt atccgtattt      2520
     gcgaaaattg ccgattgagt cttacgacgg tgcacaacca cgaattttga ttggattgaa      2580
     gcatgcccac gttagcattg tactacagtg tcgtgaagga aagctcgatc aacccatagc      2640
     cataaaaaca cgattgggct ggactgtatg cggtggaggt gcggatgaaa acgcgccaaa      2700
     catggtgcat tactcatttc acataggatc acgtaacgat cattcggatg aagatttgca      2760
     tcaggctatg aaagaatatt ttaccctcga tagtcttggc gtggtgaaat cgagtgtagc      2820
     tctattatct acagaagatc aacgaagctg caagatgctg gaatcactga ccaatttcaa      2880
     tggcgagcgc tacgagacgg gtttgctttg gcgctacgat gacatccgcc tgccagatag      2940
     tcggtcgatg gcgcttcgcc gattccgctt actggaaaag cgtatgacca aggatccaga      3000
     tctagctaaa gccttgaatc aaaagattgc ggagtacctt gcgaaaggtt acattcggga      3060
     gctaaccaaa gaagaagaag atcgacctgt ttcacgtgca tggtatttac ctgtgtttcc      3120
     ggtattcaat cccaataaac cgggaaaaat ccgaatcgta tgggatgcag ccgccacgat      3180
     tttcggagtt tcgttgaaca gcgtactgtt aaagggtcct gaccaaattg gctctctttt      3240
     cggcatactc ttgcaattcc gggaacatca gattggactt acaggcgata tacgcgaaat      3300
     gttccaccaa atacagattg tggaacaaga ccgggcatgt cagcgcttct tttggaacaa      3360
     tgactctgga gagaccgtcg tttttgaaat gtctgttatg acatttggtg cgtgttgctc      3420
     gcctagcacg gcacaatttg tcaagaattt gaacgcagaa cgttttattg ggaagtttcc      3480
     acaagcagtg gatgctatct taaaacgtca ctacgtggac gacatgttgg tgagcgtaaa      3540
     gacggaagaa gaggcagttc gtatagcgca gcaagtaaaa cacatccatt cccaaggcgg      3600
     attcgagatc cgcaactgga taagcaactc tccagcggtc ctgctggcat taggagagga      3660
     ggatgcgaaa ataaagaatc ttgatctgtc agctgagatg gcaactgaga aagtcctagg      3720
     actttggtgg tgtactgaaa aggacacgtt cacatataga gtaggctgga cccgctacga      3780
     cgaagcgctt ttaacaggcc aaaggcgacc gacaaagcgg gaggtactga aagtacttat      3840
     gtcgattttt gacccgctag gcctcattgc ccaccttctc atctacctga aggttttact      3900
     acaagaaatt tggcgttctg gaacccaatg ggatgaggag atcaacgata ctttgttttt      3960
     gaagtggcaa acctggctac gagtgcttcc tgaagttgaa agtgtacaga tacctcggtg      4020
     ctactaccct gaaaatattt ccaactgcaa agtcgaatta cacacgtttg tcgatgccag      4080
     tgaaaccggt tttgcagccg tatcgtatct aagattttct aacggcaatg aagtaagaag      4140
     tattctcgtc acagcgaaaa ccagagtggc ccccctaaaa tttcaatcaa ttccaaggct      4200
     ggagttacag gctgcggttc tcggtgcaag actcgcacaa acgatcactg aatctctttc      4260
     cattcaagca catcgacgct gtttttggac tgattctcga gatgttttat gttggatcaa      4320
     ctcggaccac cgtcggttca cacaatttgt ggcgcatcga gttagcgaac tcctcgacac      4380
     aacagaaaca tcagaatggc gttgggtacc aacgaaacag aacgtggcgg acgaagccac      4440
     gaagtggcag ggtcgtccag acctcgctgc aaacagcaga tggtttaatg gccccgaatt      4500
     cctccgaaga gatgaactcg actggccaca acaaagccaa atcttcaaga caacactcga      4560
     agaaatacgt cctcatttgt tggcacacat ctcaacggag tcgccggcat tgcgtttggt      4620
     tgaatactcg agctggaaac gagtggtcag cgtaattgga tatctacgcc gttttgtgga      4680
     aaattgtcga cgtaaattgc aacatcatcg tattcttaca ggctccttgc tcatggaaga      4740
     aatacgcgca gccgaagact tcctttttcg ccaagctcaa caggatacgt tcgctgaaga      4800
     gattgctaca ttgatccaag gccgacagat tccccgaagc agctcacttt ttaagtcaac      4860
     tccgtttgtt gacgaaaaag gaatcttgcg cgtgcgaggt cgtactaccg gctgtgcctt      4920
     cattacggag gaaacgaaga atcccatcat cctgccccga aaccaccaca taacaacact      4980
     acttattagt cactaccacg acaaatacca ccatttgaat caagaaaccg tcgttaatga      5040
     gcttcgacag aaattttcga ttccacggct acgcgtttcc tgctccaagg tgagaaggaa      5100
     ttgtcagcga tgcaagaacg atcaagcaag gccgagcttt ccgattatgg ccgatctacc      5160
     cgatgcaaga ttagctgcct actctagacc tttcactcac gtagggatcg attattttgg      5220
     accgatggag atcgcaatag gtcgcagagt ggagaagcgg tggggaatgc tagctacctg      5280
     tatgactacc cgagcagtgc acatcgagat agcgcacact ctgagcacag attcttgtgt      5340
     gatggccatc cgcaacatga ttgctcgtcg aggaatacct cgttacatat actgtgatag      5400
     agggaccaat tttgttggta caagtaaaga gttgagccgt gttgaagagg agctcaacgt      5460
     tgaggtcatg atgaaagagt tcacaagttc tgagactgtc tggtctttta acccaccatt      5520
     gtcaccacat atgggtggat gttgggagcg gctgatccgc agtgtgaaga acagtttaaa      5580
     gtccttgaaa ctgccacgac ggcctacaga tgaggttcta cgtaacgcgt tgatcgaaat      5640
     cgaaaatacc ttgaactcaa gaccattgac acacgtttcc atagaagaca ctgccgctcc      5700
     agctcttacg cccaaccata ttctgctggg aacttccaat ggaacaaaac cgttgtctac      5760
     aatggacgac agtgctgccg ccgtacgaca atgctggcgt acgtctcagg ttatcgctaa      5820
     tcaattttgg aaacgatgga ttgctgagta tctaccagag ataacaagga gaacaaaatg      5880
     gtacaattcc agcggtcagc cggtgaagat cggcgacata gtcgtcatcg tagactcgac      5940
     atttccccgc aactgttggc ctaaaggcag ggtgattgcg actcgccctg gtcgagatgg      6000
     agaggtaagg tcagcgacag tgaggaccat gactggtgtc tacgagaggc cagtgatcaa      6060
     gctggccgta ttggacgtta ggcgcgaaaa ggagtagtcg accggatggt cggcgtaccc      6120
     ggggggag                                                               6128
//
ID   BEL-686_AA-LTR repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-686_AA-I;
KW   BEL-686_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-723
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-723
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 278-278 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 723 BP; 258 A; 144 C; 122 G; 199 T; 0 other;
     tgttggcgaa cacatagttg ccagcgcgca ccttcaatac tgcaaccttg gcccacacgc        60
     acaccgtgaa gctacaccgg gggtcaggta atgtaacgct gtcaaccggt gagtagaaga       120
     acaaccaaaa cagaagtgag cgcatatgaa gttggatcga tatttgttat ataattaaag       180
     tgaattaata gattagaaag tatccggaaa ttgaagaatc tactatcaat attagttgct       240
     actacaaggt aaaattcgta ttactctaaa tatacttaaa attaattgca ttcgatctat       300
     agcctatccg actgatttga cagtcattga gatatttcta acctaaagtt tgaacctgca       360
     ttacagtaag accggtaagg ctgaatttca ataagtttct tacgatgaat tactaatttg       420
     tacctaatta cccagtttcc caaaccatta ctacgactaa gacaaagaca gacgaaacga       480
     ctagctaggg gactaaacgt aagtaacgaa ttcaagacat aagactttat taagacacac       540
     ggcataatca ttcaaacatg ttcactgcta aatctgtata taagactaaa acgaatcata       600
     tgtactattt gtcaaacagg ataattataa tctaccgctg aactacacca agtcgtattt       660
     ccttacggtg attataatca cggaattaac ccctaaagta ccctgttggt tctaaatcca       720
     aca                                                                     723
//
ID   BEL-687_AA-I repbase;    DNA;    INV; 6097 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-687_;
KW   BEL-687_AA-I; BEL-687_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6097
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6097
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..6064
FT                 /product="BEL-687_AA-I_1p"
FT                 /translation="MSSREAHGSGKSVKVTKKGKSSKEKVDDVVDSGNVSI
FT                 VVTGVPEETSVAERTLAGRTCKSCRGPDTDEMVQCDVCDKWHHFGCVGVTE
FT                 EVADHSWSCPKCVSAKWAQRSGSTSSRQHQPNVEAKSDTKTQNTQASKGLH
FT                 KNDQQSSPINVDGDPKMGMKTQDQKQPTDNKQHHTGEKKAESSAVSSVLSS
FT                 SSSRRSSRTLLKLQMQKLEDEERIAKEFLERKYALLQEAASEMGSKASSKA
FT                 SSKASSSMSRVREWVYDDSANRHDERRLGCSRFEPQRYSTQNPGALADLNH
FT                 LQVQRDQLSPMMQDQLSLGQTYSVKTMFRSAADPNNNTVYPTVPAYHNVSH
FT                 RCEPTHVEGQCTAEQVPSRWRSRREPILETDDTDPCPLTQKQLAAHQAISK
FT                 ELPPFSGKPEEWPIFLSSFTNTTAMCGFTDAENAVRLQKSLTGKAYDAVKS
FT                 SLMHPSNVKGVLATLRMRFGQPEAIVHSLIAKITALPPLREDKLETIMDFA
FT                 VEVQNFCAIVDACDLEEHMYNVSLLHQLVSRLPPSIKLDWARYRQALPRVN
FT                 LATFGNWIYSLAEAASSVTIPNIQEAKFERSESRPIKKSSGYINAHLERNA
FT                 IEPKSNECLVCKSSCETVKKCKQFLELSRDSRWAVVRDFNLCRRCLEKHYG
FT                 GCKAQACGKNGCLRKHHELLHNENQCPNDASPPTGGQQHDQSSNGLAQHEC
FT                 NTHRSKSSSSLFRYLPVVLHGKSGHVHTFAFLDEGSKLTLMDQDLADELDV
FT                 AGVESPLYLRWTGGTERCEKDSRIVTVSIAGTHDGAKRFKLDGVRTVKELQ
FT                 LPRQSLDAGQMKEQYPYLRGLPIESYNRARPRILIGLKHAHVSLVLQSREG
FT                 KLEQPIAIKTRLGWTICGGSDGENSPNMVHYSFHVGSRDDHSDEDLHQAMK
FT                 EYFSLDSLGVIKPSEVLLSSDDQRSCRMLESLTKFNGDRYETGLLWRYDDI
FT                 RLPDSRPMALRRYHLLEKRMNKDPDLAITLNQKIMEYIAKGYIRQLTKEEE
FT                 NQPVQRVWYLPVFPVINPNKPGKVRIVWDAAAKTYGISLNSALLKGPDQMG
FT                 SLFSILLQFREHRIGLTGDIREMFHQVEIREEDRSCQRFFWKDEYGEVAVF
FT                 EMCVMTFGACCSPSSAQFVKNLNAERFIGKYPQAVDVIIKRHYVDDMLVSV
FT                 KTEKEAIRIANQVKEIHSQGGFEIRNWISNSTTVLRSLGEDEAKIKNLDLS
FT                 AEVATEKVLGLWWCTEQDTFTYKVGWTRYDEALLQGRRRPSKREVLKVLMS
FT                 IFDPLGLIAHFLIYLKVLLQEIWRSGAQWDEEINDALFAKWQTWLRVLPEV
FT                 ESVQIPRCYNLQDFDRIIELHTFVDSSENGFAAVSYLRFSDGTHVECILIT
FT                 AKTRVAPLKFQSIPRLELQAAVLGARLAQTIAESLSIRITRRCFWTDSRDV
FT                 LCWINSDHRRFTHFVAHRISEMLDTTEANEWRWVPTKENVADDATKWQGRP
FT                 DLTVGSRWFNGPEFLWRNESDWPLQSLLTKSTQEELRSCLVAHNSTTTPSL
FT                 CVINFSTWKHLVSVLGLVIRFPTNCRRKRQLQPMRIGPLSMEEIRAAEESL
FT                 FRIAQREFFADEIHTLNQGKQVSRNSKLFQSTPFIDENGVLRMRGRTAGCP
FT                 FITEEAKNPIILPRDHHVTTLVIRHYHEKYHHLNQATVINELRQKFSIPRV
FT                 RASCAKVRINCQRCKNNRASPNTPIMADLPDARLAAYSRPFTHVGIDFFGP
FT                 MEVVIGRRIEKRWGMLATCMTTRAVHIEVAHSLNTDSCLMAIRNMIARRGI
FT                 PRYIYCDRGTNFVGTNREISRIKKELDHEEMMKEFTSSETTWCFNPPSSPH
FT                 MGGCWERLIRSVKNSLKALNLPRRPSDEVLRNALTEIENTLNTRPLTHVPI
FT                 EDDASPALTPNHILLGSSSGSKPLTTVDDSSIAVRPCWRASQIIANQFWKR
FT                 WTVEYLPDITKRTKWFVSSAPPVKLGDIVIIVDSTLPRNCWPKGRVIATRL
FT                 SRDGEVRSATVRTAAGVYERPVVKLAVLDVMREDK"
XX
SQ   Sequence 6097 BP; 1777 A; 1367 C; 1529 G; 1424 T; 0 other;
     tcttataata ttcgtttatt atatcttcaa agaaatgtcg agtcgcgaag cacacggttc        60
     cggtaagagt gtcaaggtga cgaaaaaagg caagagctct aaagaaaaag tggatgatgt       120
     ggtcgatagt ggtaacgtgt cgatagtggt cacgggagtt ccagaggaga catcagttgc       180
     ggagcgaaca ttggctggac ggacctgtaa atcgtgcaga ggtccagata ctgacgaaat       240
     ggtgcagtgt gatgtgtgtg ataaatggca tcattttggc tgtgtgggag tcacggaaga       300
     ggtagcggac catagctgga gttgtccaaa gtgcgtatcg gcaaaatggg ctcagcgatc       360
     gggatctact tcaagcagac aacatcaacc aaacgtcgaa gccaaaagcg acacaaaaac       420
     acaaaacacg caagcgtcaa aaggcctgca taaaaacgac cagcaaagtt ctccaataaa       480
     cgtcgatggc gatccaaaaa tgggcatgaa aactcaggac cagaagcagc cgacagacaa       540
     caagcaacat cacactggag aaaagaaggc agagagcagt gcagtatcga gtgtcttgtc       600
     atcctcgtcc tcacggagat cgtcaagaac acttttgaag ctgcaaatgc agaagctaga       660
     ggatgaagaa agaatagcaa aggagttcct agaaagaaag tatgcccttt tacaggaggc       720
     agctagcgaa atgggttcaa aagcaagttc caaggcaagc tctaaggcaa gttccagtat       780
     gagccgggta cgtgaatggg tgtatgacga cagcgcgaat cgacatgacg aacgtaggct       840
     gggctgttcg agatttgagc cacaacggta ttctacgcag aatccgggag cgttagcgga       900
     tctgaatcat ttacaagtac agagagatca actgagtcca atgatgcagg atcaactatc       960
     ccttggacaa acgtattcag ttaaaacaat gttcaggagt gctgcagacc cgaacaacaa      1020
     taccgtgtat cctacagtgc cagcgtatca caatgtttct catcgatgcg aaccaaccca      1080
     tgtagaaggt caatgtactg ccgaacaagt tccatcaagg tggcgctcca gaagagaacc      1140
     aatcctcgaa acagatgaca ccgatccctg ccccctcacc cagaaacaac tggcggcaca      1200
     tcaagccata tcgaaggagc tgccaccatt ctcaggaaag ccagaggagt ggcctatatt      1260
     tctctcatcc tttaccaaca cgactgcaat gtgtgggttt acggacgcag agaacgcggt      1320
     tcggcttcag aaaagcctga cagggaaggc atatgacgcg gtgaagagta gtttgatgca      1380
     tccgtcgaac gtgaagggag ttcttgctac actacgaatg agattcggac agccagaagc      1440
     catcgttcac tcgcttatag caaaaattac agcattacca ccgttgagag aggacaagct      1500
     tgagacgata atggactttg cggtggaagt acaaaacttt tgtgctatcg tggacgcatg      1560
     cgatttagag gagcacatgt acaatgtatc gttattacac caacttgtta gcaggctacc      1620
     tccgtctatc aagttagact gggccagata tcgtcaagca ctacctagag tcaacctagc      1680
     gacattcggg aactggattt attccttggc agaagctgcc agttctgtga ctatcccaaa      1740
     tattcaagaa gctaagttcg agcggagtga atcgcgtccg attaagaaga gcagtgggta      1800
     cattaacgcg catctggaga ggaacgcaat cgaaccgaag tcaaacgaat gtttggtttg      1860
     caagtctagc tgcgagacgg ttaagaagtg caagcagttc ttagaactat ctagagattc      1920
     tcgatgggct gtagtgcgag atttcaatct ctgtcgtcgt tgcctggaga agcactatgg      1980
     aggatgtaag gcccaagctt gcggaaagaa cggctgcctt cgaaagcatc atgagctgct      2040
     tcataacgag aatcaatgcc cgaacgatgc gtctccaccg acaggtggac aacaacacga      2100
     tcaatcgtca aatggtttgg cgcagcacga gtgcaatact caccgctcta aatccagcag      2160
     ttctctcttc cgttacttgc ccgttgtttt gcatggaaag agtggacacg ttcacacatt      2220
     cgctttcctg gatgagggtt caaagctcac actaatggac caagatcttg ctgatgaact      2280
     tgatgtggcc ggtgttgaaa gcccactgta cctccggtgg accggtggca ccgagcggtg      2340
     tgagaaggat tctcgtattg tgactgtgtc gattgcaggt acgcatgatg gagcaaagag      2400
     gtttaaactc gatggagtac gaacagtaaa agagctacag ttgccacggc agtcattaga      2460
     tgcaggacag atgaaggaac aatatccgta cttgcgaggt ttaccaattg agtcatacaa      2520
     tcgcgcccgt cctcggattt tgatcggatt gaagcacgct catgtcagcc ttgtcctgca      2580
     gagtcgagaa ggcaagttgg aacagcccat agctataaaa acaagactgg gatggaccat      2640
     atgtggtgga agcgatggtg aaaactctcc aaacatggtg cattactctt ttcatgttgg      2700
     ctcgcgtgac gatcattcgg atgaagattt acatcaggca atgaaggaat acttttctct      2760
     ggacagtcta ggtgtgataa agccaagtga agttcttctt tcttcagacg atcagagaag      2820
     ttgtagaatg ctggagtcgc taaccaagtt taatggcgat cgttacgaaa cagggttgct      2880
     ttggcgctac gatgacattc gtctgccaga tagccgaccg atggcgctcc gtcgatatca      2940
     cttgctagag aagcgtatga acaaggatcc cgacctagcc ataacgctga accaaaaaat      3000
     aatggaatac atagcgaagg gttacattcg acagctaaca aaggaggagg agaatcaacc      3060
     cgtacaacgt gtttggtatt tgccagtatt cccagtgatc aacccgaaca aacctgggaa      3120
     ggtaaggatt gtgtgggatg cagcagccaa aacttacgga atatcattga attctgctct      3180
     gttgaaaggt cccgatcaaa tgggttcact gttttctatt ctactgcaat tccgtgaaca      3240
     tcgtattggg ttaacgggtg acatacgtga gatgtttcac caagtagaga ttagagaaga      3300
     ggatcgctca tgccagcggt ttttctggaa ggatgaatac ggagaagtcg ccgtgtttga      3360
     gatgtgcgtt atgactttcg gtgcatgctg ctcgcctagc agcgcacaat tcgtcaaaaa      3420
     tttgaatgcg gagcgattta ttggaaaata tccacaagcg gttgacgtca tcatcaagcg      3480
     acattatgta gacgacatgc tcgtaagcgt aaaaaccgaa aaggaagcga tccgcattgc      3540
     aaatcaagtc aaggaaatac attcccaagg cgggttcgaa atccgaaact ggataagtaa      3600
     ttcaacgacg gttttgcgat cgctaggaga agacgaagca aagataaaaa atcttgatct      3660
     atctgctgag gtggctacag agaaagtgct ggggctgtgg tggtgcactg agcaggatac      3720
     attcacgtat aaagtaggct ggacgcgcta cgatgaagca ctcctacaag gtcgccgacg      3780
     cccttcaaag cgagaagttc ttaaggtgct catgtctatc tttgaccctc tcggattgat      3840
     cgcccatttt ctgatctacc taaaggtctt acttcaggaa atctggcgat ctggagctca      3900
     gtgggatgaa gaaatcaatg atgccttatt tgctaaatgg caaacgtggc tgcgggtact      3960
     accagaagtt gaaagtgtcc aaataccacg gtgttataac cttcaagatt tcgatcgaat      4020
     aattgagcta cacacgttcg tggactccag tgaaaacgga ttcgctgcag tatcgtatct      4080
     gaggttctcc gatggtactc atgtggaatg cattctcatc acagcaaaaa ctcgggtagc      4140
     tcctctcaaa ttccagtcta tccctaggct tgaactgcag gccgcagtac ttggtgcgag      4200
     actggcacaa accattgctg aatcgttgag cattcgcatt acacgacgct gtttttggac      4260
     ggactctcga gatgtactgt gttggatcaa ttcagaccat cgtaggttca cacattttgt      4320
     agcacaccga attagcgaaa tgctcgatac cacagaagca aacgagtggc gctgggttcc      4380
     aacgaaggaa aacgttgcag atgacgcaac aaagtggcaa gggcgaccag atctcaccgt      4440
     tggcagcaga tggtttaacg gtcccgaatt cctctggagg aatgaatctg attggccact      4500
     gcaatccctg ttaaccaaat ccacacaaga agagcttcgg tcctgcctag ttgcgcacaa      4560
     ttcaactaca acgccttcgc tttgtgtgat taacttctcc acctggaaac atctagtcag      4620
     tgtacttggg ttggtaatcc gttttccaac taactgtcga cgtaagaggc aacttcaacc      4680
     tatgcgtatc ggtcctttaa gtatggagga gatacgtgca gccgaagaaa gtctgtttcg      4740
     tatagcacaa cgagaattct ttgctgatga gattcatacc ctaaaccaag gcaagcaggt      4800
     ttcgcgaaac agtaaactat ttcaatcaac tccgttcatc gacgagaatg gagtcttacg      4860
     catgcgaggc cgcactgcag gttgtccttt cattactgaa gaagcgaaga accctattat      4920
     attgccccgt gaccatcacg taaccacact tgttatccga cactaccacg aaaaatacca      4980
     ccacctcaat caagcaaccg tgatcaatga gcttcgacag aaattctcca ttcccagagt      5040
     tcgagcttcc tgcgccaagg tgagaataaa ttgtcaacgc tgcaagaata atcgggcctc      5100
     gccgaacact ccaattatgg ccgatctacc tgatgcaaga ttagcagcct attctcgacc      5160
     ttttacccat gtcgggatcg acttctttgg gccaatggag gttgtcattg ggcgtagaat      5220
     tgagaaacga tggggaatgt tagccacctg tatgactaca cgagcagttc atatcgaagt      5280
     agctcactcc ctaaacacag actcatgttt gatggctatt cgaaacatga tagctcgacg      5340
     tggaattcct cggtatatat actgcgaccg cggaactaac ttcgttggta caaatcgaga      5400
     aatcagccgc attaaaaagg agctcgatca cgaggagatg atgaaagagt ttacgagctc      5460
     tgaaactacc tggtgcttca acccgccatc gtctccacat atgggtggat gttgggagcg      5520
     gctaatccgc agtgtgaaga acagcttaaa agctctaaat ctaccgcgac gaccatcaga      5580
     tgaagttttg cgtaatgcgt tgaccgaaat cgaaaatacg ttgaacacta gaccacttac      5640
     acacgttcca attgaagatg acgcatcacc agcactaact cccaatcaca ttcttttggg      5700
     aagttcaagt gggtccaagc cactaactac agtcgacgat agcagtatcg ccgtacggcc      5760
     gtgttggcga gcttcccaga tcattgcgaa ccaattttgg aaacgatgga ctgtagaata      5820
     tctgccggat atcacgaaaa ggacaaaatg gttcgtttca agtgccccgc cggtaaaatt      5880
     aggagacatt gttatcatcg ttgactctac gttgcctcgt aactgttggc ccaaaggaag      5940
     ggtgatcgca actcgactaa gccgggatgg agaggtaagg tcagctacgg tgcgaacggc      6000
     cgctggtgta tatgaacgac cagtagtcaa gcttgccgtc ctggatgtca tgcgcgagga      6060
     taagtagtcg tcctggtggt cgacgtaccc gggggag                               6097
//
ID   BEL-688_AA-I repbase;    DNA;    INV; 5920 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-688_;
KW   BEL-688_AA-I; BEL-688_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5920
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5920
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..5917
FT                 /product="BEL-688_AA-I_1p"
FT                 /translation="SQRFGSSMSHEQDGFDCSKCEQPNSMENMVMCDVCMD
FT                 WYHLSCAGVSPGVENRPWRCKKCLPSAPIEQNVNNVKKKKAKKSGKPKDCD
FT                 KLEALEAIGDGSKNVLPDVTSDNNGTPKKHPEIAKRADTAKGSVRPSTHSS
FT                 RALTQLSLQRLEEKRKLEVKKLENQRRELEQERERMRKEKELEEQENAIAR
FT                 QQLQALEQYLEEKHELEEQLEENGSISQCTSRNRRSMTRKWLEDQKSRSGA
FT                 GAKKDEREQASLTEESSEEESAIERDVIAAAGIESSNDKAKRATALTKRPA
FT                 DNNRAYDTGLKIYDKEEPVTQPSANQIAARQIWPKKLPMFSGDPEEWPIFY
FT                 SSYLDSNTACGFSPVENIIRLRECLVGPAREAVVTKLMFPQAVSSVMETLR
FT                 RLYGRPELLVKNLLRKVRQLDAPKPERLDSLVSFGMAVQQLCDHLEAANLR
FT                 SHLTNPTLLEELVEKLPAAIKLDWVRHKRSFVDPSLKEFGEFMDKLVVDAS
FT                 EVTTLIQPKSNTERSKLNQKAYIHSHSENINTMRHDPPRKPCPICSKIDHR
FT                 VRNCDEFKSLTLEERLKAVVENKLCEVCLYNHGNWPCKSRYFCNIGSCRSR
FT                 HHPLLHREEAAAMVQVDCQAHRITTSAVLFRVLPVTLYNGTRSMDSFAFLD
FT                 EGSSHTLLDSSVTRTLGIVGIPEPLELTWTSNVNRKENLSERVDLTISARG
FT                 SQRQYQLTAARTVGALNLPKQNLQMGEVSRQFEHLRDVPVNSFENAEPKVL
FT                 IGLRNLDLFAPIESRVGQPNEPIAVKSILGWAIYGPCEKSPDPPPFLGHHG
FT                 NNVSTEQELNEMIRRQFVLEDTGISPAPLPESAEITRAKEILRKTTVRKDG
FT                 RFVTGLLWKSDDIRFPNSMPMAVKRLKNLELKLARDPELRKNVHQQIEEYI
FT                 EKDYAHKATQEELKSADPDRVWYLPLNVVAHPKKPEKKRLVWDAAATVNDV
FT                 SLNSQLLKGPDLLVLLPGVICKFRERRIGFGGDIEKMFHQIRIQPEDTHSQ
FT                 RFLFRFDLSHQPDVYIMDVATFGAACSPCTAQYVLHRNAEESANEFPEAVK
FT                 AIKEKTYMDDYFDSADTPEEASERALQVKLIHARGGFNMRNWVSNSRDVLQ
FT                 HMGVASEQRQLAIDCSKEEKRQRVLGISWDPEKDVFIFSTNWHSDLAPYVF
FT                 EDRRPSKRIALRIIMSLFDPLGMLAPFLIHARMLIQDLWRLGLDWDVKIGD
FT                 KEHEKWRRWVNLLPGVTGLEIPRHYFGNAHPCSYSSLQLHIFTDASETGYG
FT                 CAAYFRIVYNDEVRCMLIMARSKVAPLKYQSIPRMELQAALLGARMLHTVI
FT                 NNHTLPITQKFIHTDSEVVLAWIRSQHRNYKQFVAHRIGEILSLTEPRNWR
FT                 HVPSKENLADCLTKWGKDTVPDSDGRWFNGKGTFLYRDMQNWPKQKQIAET
FT                 TEELRAHLLLHHVSAPDGLIDVGRFSKWNVLLRTVALVRRFASNCHRKSKG
FT                 LPIEVVKASVPFGESHVNRMRPKILAEIVLLRQHEYLQAEQYLWRVAQSDS
FT                 YPDEMKILLNNRDDPQLDKWVSLEKSSPLYRLSPFADQFGVIRVEGRTANA
FT                 SYATFDARFPIILPKDHQITSLLLTSYHCRYGHANRETVVNEVRQRFHIFN
FT                 LRSAIDKVMRSCQRCKLTKCQPQIPRMAPLPEERLTPYVRPFSYVGVDYLG
FT                 PLESSVGRRKEKRYVAVFTCLVTRAVHLEVAHNLSTDSCVMAIRRFVRRRG
FT                 PPIEIFSDNGTNFVGANNELVKQIKTINSECAETFTDARTKWSFNPPSAPH
FT                 MGGVWERMVRSVKEAIRALDDGRKLNDEILMTVLAEAEGFINSRPLTYMPQ
FT                 ESADSEAITPNHFLLGNSSGAQDPLRTPVDLAATLRSSYQRSQFLSDAIWK
FT                 RWLKEYFPTLNKRSKWFSDGKPVQVGDLVYVAEGSRRTWMRGKVMQVITGK
FT                 DGRVRQAIIRTAGDKELKRPVAKLAVMEVGGSGSCTEPRDPHQNPRGG"
XX
SQ   Sequence 5920 BP; 1780 A; 1334 C; 1496 G; 1310 T; 0 other;
     ttctcaaaga tttggttcaa gcatgtcgca cgaacaggat ggattcgact gtagcaaatg        60
     cgaacagccg aactcaatgg aaaacatggt aatgtgcgac gtttgtatgg attggtacca       120
     cctgagctgc gctggagtct cgcctggggt ggagaacaga ccatggcggt gtaaaaaatg       180
     tctcccatca gccccaattg aacagaatgt caacaatgtt aaaaagaaaa aggcgaagaa       240
     gagtggtaaa cccaaagatt gcgataaatt agaagcattg gaggcaatcg gcgacggatc       300
     caagaatgtg ttacctgatg tgacatcgga caacaacggt actccgaaga agcaccccga       360
     aatcgcgaaa cgagctgata ctgcgaaagg atctgtgcga cccagcacac acagctctcg       420
     cgctctaact caactatcat tgcaacgatt agaagaaaaa aggaagctgg aagttaaaaa       480
     gctagaaaac cagcgaaggg agctggagca agaaagggag cgaatgcgaa aggaaaagga       540
     actggaagag caagagaacg cgattgccag gcaacaactg caagctttag aacaatactt       600
     ggaagagaaa cacgaattag aggaacaact ggaggagaat ggaagcattt ctcagtgtac       660
     gtctcgtaac cgcaggtcaa tgacacgaaa atggcttgag gatcagaaat cacgaagcgg       720
     agccggagcg aaaaaggatg agagagaaca agcgtcctta accgaagaat cttctgagga       780
     agaatcagcg atcgaaaggg atgttatagc agcggcaggt attgaatcct caaacgacaa       840
     ggcaaaaaga gccaccgccc tcacgaaacg accagcagat aataatcgcg cctacgacac       900
     tggattgaag atctatgaca aggaggaacc tgttacacaa ccaagtgcaa accaaattgc       960
     cgcaaggcaa atttggccaa aaaagcttcc gatgttctcg ggtgatcctg aggagtggcc      1020
     catattttat agcagttatt tggattcaaa cactgcatgt gggttttcac cagtcgagaa      1080
     tatcatccgt ctcagagaat gcctcgtggg cccagcacgt gaagccgtgg taacgaagtt      1140
     aatgtttcca caggctgtgt catcggtaat ggaaactctc cggagattgt atggccgacc      1200
     ggaactgctt gtcaaaaacc tattaagaaa agttcggcaa ctagatgctc caaaaccgga      1260
     gcgacttgat agtcttgtga gtttcggaat ggccgttcaa caattatgcg accacctcga      1320
     ggccgccaat ctacggagtc atttgacaaa ccctacgctg ctagaagaac ttgtagagaa      1380
     gttgccagct gctatcaaac tcgattgggt taggcacaag cgttcattcg tcgacccatc      1440
     gttaaaagaa ttcggcgagt tcatggacaa gctagttgta gacgccagcg aggttacgac      1500
     tctcattcaa ccgaaaagca acactgaaag atcaaaacta aatcaaaagg catacattca      1560
     ttctcacagt gagaacataa atactatgag acacgacccg cctcggaagc cgtgtccaat      1620
     ttgctctaaa attgatcatc gagttagaaa ttgtgacgaa ttcaagtcat tgactctcga      1680
     ggaacgtttg aaagcggtgg ttgaaaacaa gctctgtgag gtgtgtctct acaatcacgg      1740
     caactggccg tgtaagtcaa gatacttttg caacatcgga agttgtcgct cacggcacca      1800
     tccactattg caccgagaag aagccgcggc catggtgcaa gtcgactgcc aagcgcatcg      1860
     gatcacaacg tcggccgtgc tgtttcgtgt tttgccggtc acgttgtata acggaacacg      1920
     aagcatggat agttttgctt ttctcgatga aggttcgtct cacaccctgt tagattctag      1980
     tgtgacgcgc acacttggaa ttgttggtat tccggagccg ctggaactaa cgtggacttc      2040
     gaacgttaac cgaaaggaaa atttgtcaga acgcgttgac ttgacgattt cagcaagggg      2100
     aagtcaaaga caataccaat taacagcagc gcgtacggtt ggcgcgttaa atttaccgaa      2160
     gcaaaatttg caaatgggcg aagtatcaag acagttcgag catctcagag acgttcccgt      2220
     aaattcattt gaaaatgctg aaccaaaggt actcattggt ctacgtaatc tggacctttt      2280
     tgcaccaata gaaagccgtg taggtcaacc aaacgaacct atagctgtga aaagcatctt      2340
     aggatgggca atttacggac cttgcgaaaa aagccccgat ccacccccat tccttggaca      2400
     tcacgggaat aacgttagca ccgaacaaga attgaacgag atgatcagac gacagtttgt      2460
     tctggaggac accggaatca gccctgcacc actaccagag tctgcagaaa ttactcgtgc      2520
     taaagagatt ctaaggaaaa ctactgtacg aaaggatgga agattcgtca cggggctgct      2580
     atggaagagc gatgatatac gcttcccaaa cagtatgcca atggctgtca agagactgaa      2640
     aaacttggag ttaaagctag caagagaccc agaactgcgc aaaaacgtac atcagcaaat      2700
     cgaggagtac attgagaagg attacgctca taaggcgaca caagaagagc tgaaatcagc      2760
     agatcccgac cgagtatggt acttgccact gaacgtagta gcacacccaa aaaaacccga      2820
     aaaaaaacga ctcgtttggg acgccgccgc aacagtgaat gatgtgtcac tgaattccca      2880
     gctgttgaag gggcccgact tgcttgtgct cctacctgga gttatatgta agtttcgcga      2940
     aaggcgcata ggcttcggag gagatatcga aaagatgttt catcaaattc gcatccagcc      3000
     agaagacacc cattcacaac ggttcctttt ccgcttcgat ttgagtcacc aacccgatgt      3060
     ctatattatg gacgtggcga cgtttggtgc ggcttgctca ccatgcacag cgcaatacgt      3120
     gctgcatcga aatgcagaag aaagtgcgaa tgaatttcca gaagcagtaa aggccataaa      3180
     ggaaaaaacg tacatggacg actacttcga cagtgctgat acaccagaag aagcgtcgga      3240
     gcgtgccctc caagtgaaac tgatccatgc cagaggcggg ttcaacatgc gaaattgggt      3300
     tagcaacagc cgcgacgtac tacaacacat gggtgtagct tcagaacaac gacaacttgc      3360
     gatagactgc agcaaagaag aaaagcgaca acgtgttctt ggaatatcgt gggatcccga      3420
     aaaagatgtc ttcattttct caacaaactg gcacagtgat ctcgctccgt atgtgtttga      3480
     ggatcgacga ccatccaaac ggatcgcatt gcgtatcata atgagccttt ttgatccgct      3540
     ggggatgctg gcgccctttt taatccatgc cagaatgttg atacaagatc tgtggcgtct      3600
     tggcttggat tgggatgtca aaattggtga caaggagcat gagaagtggc ggcggtgggt      3660
     aaacctactt ccgggagtta ctggcctgga aatcccaagg cattattttg gaaatgctca      3720
     cccatgctcg tattcgtcac tgcagttgca cattttcacc gacgctagcg agactggtta      3780
     cggatgtgcg gcctatttcc ggatcgttta caacgatgag gtgcgatgca tgctgataat      3840
     ggctcggagc aaagtggctc ccctcaagta ccagtcgatc ccacgaatgg aattgcaagc      3900
     ggcgctttta ggagcaagaa tgttgcacac cgtgatcaac aaccatacgc tgccgataac      3960
     gcagaagttc atccacacag attccgaggt ggtgcttgct tggattcgct cgcagcatcg      4020
     aaattacaag cagtttgttg cacatcgaat tggggagata ttatctctga ctgaaccaag      4080
     gaactggcga cacgtacctt cgaaagaaaa cttagcggac tgcttaacaa agtggggcaa      4140
     agacaccgta ccagattcgg acggaaggtg gtttaatgga aagggaacct ttctgtatag      4200
     ggacatgcaa aattggccga aacaaaagca aattgcggaa acaaccgaag agctccgagc      4260
     acatctccta ttacaccatg tctcagcacc ggacggcctc attgacgtcg gacgcttctc      4320
     aaagtggaat gtgttactta gaactgttgc attggtacgt cgttttgcat ctaactgtca      4380
     ccgaaaaagt aagggacttc ctatcgaggt tgtgaaagct tcagtcccat ttggtgaatc      4440
     ccacgtaaat aggatgcgtc ctaagattct cgccgaaatc gtacttttac gccaacacga      4500
     gtatttacaa gcagaacaat acctatggcg ggtcgcacag agcgactcct acccggatga      4560
     aatgaaaatc ctattgaaca accgagatga tccacagctc gacaaatggg taagtcttga      4620
     gaaatcaagt cctctatata ggttgtcccc cttcgcggat cagttcggag tcatccgcgt      4680
     ggaagggcga acagccaatg caagctatgc aacgttcgat gcacgctttc caataatact      4740
     accaaaagac catcaaatta catcattgtt gctgactagt taccactgtc gatatggtca      4800
     tgctaaccgg gaaacagtgg tgaatgaagt acgccagcgg tttcatattt tcaatctacg      4860
     ttcggccata gacaaagtga tgcgaagctg ccagcgatgt aaattgacga agtgccaacc      4920
     ccagatcccc cgaatggctc cgcttcctga ggagcgttta acgccgtatg tcaggccttt      4980
     tagttacgtc ggtgtggatt atcttggccc gctagagtct tccgttgggc gtcgcaaaga      5040
     aaaacgatat gtggctgtct tcacatgcct tgtaacgcgt gccgtacatt tagaagttgc      5100
     acacaacttg tcaactgatt catgcgttat ggcaataaga agattcgtcc gcagacgtgg      5160
     accgccgatc gaaatattct cagataacgg cactaatttt gttggcgcga ataacgagtt      5220
     ggtgaagcag ataaaaacta taaatagtga gtgtgccgaa acttttaccg acgcgcgtac      5280
     caaatggtcc tttaacccac cgtctgcacc acacatgggt ggtgtgtggg aaaggatggt      5340
     gaggagtgtc aaagaggcga ttcgggctct tgacgacggg cgcaaattaa acgacgagat      5400
     attgatgaca gtgctggctg aggcagaagg atttattaat tctcgacctc taacatatat      5460
     gcctcaggag tcagcggata gtgaagccat tacaccgaac cactttctcc tggggaattc      5520
     atctggagcg caagacccat tgcgaacccc tgttgacctg gctgcgacct tgaggagcag      5580
     ctaccagaga tcgcaatttc tatcagatgc aatatggaaa cggtggctaa aagaatactt      5640
     cccaactttg aataaacggt ccaagtggtt ctctgatggt aaaccagtgc aggtcggaga      5700
     cttggtctac gttgcagaag gaagccgtcg tacatggatg cgtggtaaag ttatgcaggt      5760
     gatcaccgga aaagacggca gagtacgaca ggcgatcata cgaacggctg gggacaagga      5820
     gctgaagcgc ccggtagcga aattagcagt gatggaagta ggtggtagtg gatcctgtac      5880
     agaacccagg gaccctcatc agaatccacg gggtggggga                            5920
//
ID   BEL-688_AA-LTR repbase;    DNA;    INV; 680 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-688_AA-I;
KW   BEL-688_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-680
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-680
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 292-292 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 680 BP; 245 A; 114 C; 131 G; 190 T; 0 other;
     tgttctggca ccactgtagc acaaaccgga gcgaacacgt ctgtcagatt gacaggagta        60
     taaaacgtca atcacaaatg tgaattgatg gttgagatcc acgacaaaga ttaacaaaag       120
     gacagaaaga gtagctagta aaaattgaga agtcaggtat taatttagtg ctaaaactaa       180
     ttgaattcga gcctattaag gttaaaaact attgaatcat tgcggcaagc attataaatt       240
     gaattcgagc taagttgtgt aagcagcaaa tgttggtaag attttgaacc aaagttaagt       300
     gaggttaata gaaaatgagt agctaaaata tcaccttttc tcagaattcg aagcaatcta       360
     aaatacatcc atagcgataa ccccgacgtt aagtaaacgt tcaacatcag caggtaaatt       420
     actcaccttt gcacctttgg tactttcaat cctttcttta taaaattaca ataagcttgc       480
     gttgaaatta taggggaaat tcgggctcaa ttgggccatt cagccttggg agaagttcgt       540
     tataataact aggagaagaa caaatgtaag aaacgaatta ctgatctgta aatattttca       600
     ataatggaat taaatatttt cagctttgag ctgcgtaaac caaacgctgc tgcagagagt       660
     tttttactcc cctccgaaca                                                   680
//
ID   BEL-689_AA-I repbase;    DNA;    INV; 6089 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-689_;
KW   BEL-689_AA-I; BEL-689_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6089
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6089
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 287-287 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6089 BP; 1745 A; 1395 C; 1542 G; 1405 T; 2 other;
     attctataag atatttcgtc atgccacctt cggacgacgg agcccagaaa acaacagtgg        60
     ataaggagaa gcagggtagt tgcgttcact gcaacagacc cgattcatac gataactacg       120
     tccagtgtga tcggtgcagc gcatggtggc attatttatg cgctggagtc tccgactcta       180
     ttgcaaaccg atcgttcaca tgcgaggcct gtctacacgt tagcgtgtca tctcacgtgt       240
     catcttcaag tagcagggtg gccgcaatgc aactccgttt acgggaaatg gaagcccagt       300
     gcaaattggc ccgacaggaa cttgaaaacg aacgactggc atttgaagca gaaagaaaga       360
     cgttacaaca acggaataat caattacagc aacaaggtaa acaacgaacc gctgaatggg       420
     ttgataggca cgcgggaaat gcgaatagcg ccgatggtca aggtgtcgac cgggaagcag       480
     ctgcagccac aaacccacgt gatgatgaac tcagggggcg tccaactgtg caggaaggac       540
     cgcatacatt gtcatcttcg ttgcaagccg ctatcaacac agcagtgcag gcggcagtcc       600
     aggcagctct tcaagcaaca aactcgtcga aaggtktcca gcataccacc ggagctgaga       660
     tacctwttcg aaatacaggc gcgattccca aaacagcacc gaaagaccta acgtctacca       720
     ggatcgggac cgaaagaggt agtgaacggc agaaaggtaa acaagatctc ccacctcccc       780
     ccgaaaagcc accaggtaag ccactcgaaa atcaaaccat ttcctccaac tacaatcaat       840
     ggatccaaga attatccaag aagttttgca atacaaattt ggatcatgct acggccacta       900
     cagtgccacc acacgtcgaa agcgcccctt tgcgaccggc actttcaact agaactgtac       960
     agcattctca gcagcattct gcttccgatt gcaacaatgt acaacatatt ttgcccaaca      1020
     ttgatattgc cttgggagtg ggccaaaatg tcaataattc caataataac gttcagtcaa      1080
     acgtgtatcc gggatcaatc aatgtcttgg gatcctcggg tatgcccact tatgttccca      1140
     ccccctcgca gttagccgcc aggcaggtga tgcctcgcga cttacctccg ttcgatggcg      1200
     accccgccga ttggcccatg tttattagta gttttgtcaa tacaacgctc gcgtgtggat      1260
     atactagtgc tgagaacctc gcgcgattgc aacggtgcct caaaggtgat gcgtatgaag      1320
     ctgttcgaag ccgtctgctt cttccagata ccgttccgca agtgctgaac acactgcagt      1380
     tgctttatgg acgtccggag cttctgataa gcgctcttct acataaggta cggtccgtac      1440
     cagctccgag agcggagaag ttggaaacgc tcatcgagtt tgggatggcg gtacaaagtc      1500
     tgtgtgacca tctagaagct gctggtcaac acacccatct ttcaaaccca acactgctaa      1560
     tggaactggt tgagaagctt cccgctcaca ccaagatgga atgggcaacg tttcttcaga      1620
     agtgtccgga ggtaaatctt caaagctttg gcgtatttat gtcgtctatt gtggtgtcag      1680
     cgagcaaggt gacttcttat gctgggagct tcaagtctag ttcaacggat aggctcaaag      1740
     gcaagcagaa aggatacatc aatgcgcatg atgcggatgg tgaagaaaag gtgcgagaag      1800
     ataaaatgtg ttgtgtgtgt gaagaatcag gccatcgtgt attggaatgc gctttgttca      1860
     agtcgttttc agtggacggt cgatggaaat gtgtccagtc caaaggattg tgccgcaatt      1920
     gtttgaacgc ccatgggaga aggagctgcc gctacgccag acgttgtggc gtaggaggct      1980
     gtgaatttta tcatcatcca ttgctacatt caaacagaag taaccgaccg tcgaacgaga      2040
     gtacaccaaa agggaccgct agcaacaaca cacatcgtcc gaccacgcaa tctaccttgt      2100
     tccgcgtcgt tcccgtcaca ttgcatggac caagaacttc tgtgacgacg tttgcattcc      2160
     tggatgatgg atcctccttc acattgatcg aggaagattt gattgaagaa ttgggagtta      2220
     gcgggacgtc aatgccactc tgcttgacct ggacagcaaa catgtcgcga acggaatcga      2280
     gttcaatgga agtacagcta tccgtgtctg gcgcaggcaa caaaaaaacg aatgggtatg      2340
     gtagcacaca ccgtgcaaaa gctaggtctc tctagccaga ctttgtgcta tgatgatctt      2400
     gtgaagacgt tccagcactt ggagggactg ccgatagcca gctacaagaa tgcagtacca      2460
     cgattactga tcggcgttga caatttgaat ttgacggtgc cgctgaaaat gaaggaaggg      2520
     cgccgtcatg atccggttgc agtaaagacc cgattaggtt ggtgtatata cggcggaaca      2580
     gactacactt catcgtcgaa ctcacttaat ctacatgtgt gtgcttgcac gattgatcgt      2640
     gatttacaca atatcgtgaa agattacttc tccttagaag atatgggaac aaaagctgaa      2700
     gtggagctgg aatcgacaga tgataaaaga gcacgagtga ttcttcagga aactactgaa      2760
     cgcgtgggcg atagatacca aacggggctt ttatggaaat atgattccat cgagtttccg      2820
     gatagctata acatggcact gaaacgcctt gaatgccttg agaagaggat gaatagggat      2880
     gaaaacctta aactgaacat tcatcagcag ataaaggact atcaaacaaa agcatacgca      2940
     aaactagcta cacaggaaga gctcgatcaa gcagatccta ggcggatctg gtatttgccg      3000
     ctgggagcag tggtcaatcc aaagaagccc ggaaaagtaa ggcttatatg ggatgcggct      3060
     gctactgtga atgggatttc gcttaattcc ttgcttctta aaggaccaga tcagctaaca      3120
     tcactaccag ctatactatc acgattccga caattctcag ttggagtttc agcggatttg      3180
     caggaaatgt tccaccagat tggaatacga gaatctgata gacattccca acgattttta      3240
     tggcgcaaga attcatctga acagccttcg gtgtttctca tgaacgtcgc gacattcggc      3300
     tcgtcctgct cgccagcatc cgcacagttc gtgaagaata aaaacgcgga agagttcgcc      3360
     gatttgtatc cggaggcagc acaagcaatc atacataacc attatgtaga cgactacctc      3420
     gacagtttcg agaacgctga agacgcttca cgggtatcgc aagaagtgaa aatggtccac      3480
     agccgtggag gatttcattt gagaaactgg ttgtctaacg agcaaaaagt actggaaagt      3540
     ctgggagcgc atgcagcgac ggaaacgaaa agtttgttca tggataagac ttccgattgt      3600
     gagcgcgttt tggggatgct gtggaacacg aaggatgacg ttctttgttt ttccacccaa      3660
     atcaaagaag aagtgcgaga agtaatggaa tccagcaggc ggcctaccaa acgacagatg      3720
     ctacgatgcc tcatgagttt ttttgatccg ctggggttgc tcagcgcagt cctgatacat      3780
     ggcagaattc ttctacagga cgtttggcga gctggaactc agtgggacga acctgttact      3840
     gatgacatat gggagcgatg gattagatgg gtcgaggcgt taaaaaggat caacaacata      3900
     cacgttccca gatgctattt tcaacaagca acgtccgtca gttacagagg attacaactc      3960
     cacgtgttcg tagacgcgag tgaggtcgcc tactcagcag tggcctactt tcgcacactc      4020
     aactccgagg ggataccggt ttgcgctttg gttgcgggta aagcaaaggt tgctccactt      4080
     aaaccactct cgataccaag actagaactg caagcagcag tgttgggagc gcggttgatg      4140
     cgtttcatta cagaaagcca caccgtagaa atttccaagc gattcctctg gagcgattct      4200
     tcaactgttt tggcctggat acgttcagac catcgacgct acaaacaata tgtggcatgc      4260
     agaattgggg agctcctcac gttaaccgac attgacgact ggaagtgggt gccttcgaag      4320
     atgaacccag cggatactgc aacgaaatgg ggaaaagggc cctttgagga aacggagaag      4380
     agctggtttg aaggtccaca atttctaagg aaacccgaag aagaatggcc gcgtccacga      4440
     agtgtgcagc taacagcagt agcagaagaa gaattgcgtc cttgtcattc gcatcgagaa      4500
     atcatcatac ccggcgcagt agccgactat caacgatttt caaagtggga acgtttactg      4560
     agaactatgg cctacgtgct gcgatttatc aacaacctca agttgaaacg agctggtacg      4620
     aatactgaac atgggatact cacgagggat gagctacgtt tggcgcgaac aacattatac      4680
     aaatcggtac aatggcaaac ttatcccgat gagatggcac ttctgacggt taatcgccag      4740
     aaccctttga aaacatcaag ccctctccac tctttgagcc ctttcatgga cgatgaagga      4800
     gttctgagag ttgatagccg aataaaagct gctgataagg cgacgcaatc gatgaaattc      4860
     ccaataattc ttccacgtac acatcgacta acactcctta taattgacga ctgccatcgt      4920
     aagttccatc atgccaattt tgaaacagtc gtgaacgaaa ttcggcaacg ttatcatgtt      4980
     tcccgcctac gaccagctgt caagaaggta accaaggact gtcaagtgtg caaaatcata      5040
     agggctaggc catatactcc acggatggca ccattaccac tagcacgact tgccgcttgt      5100
     gttcgtccat tttcttatgt ggggctggac ttcttcggcc cttttttggt gaaggttgga      5160
     cggagctact tgaagagatg gattgcattg ttcacctgcc ttacgattcg ggcagttcac      5220
     gttgaagtag tgttcagctt aactacgaaa tcttgcattg agtgcatacg tcgcttcatc      5280
     tgtagacgag gtgttcctaa cgaaatctat actgataacg gaaccaactt taagggagcc      5340
     gcccgattga tgaaggaaca acaagagatg attcgagaaa taaatgaaaa cttggccggt      5400
     accttcacta gcactacaac gaaatggctg ttcataccac ctgcgtcacc ccatatgggt      5460
     ggagcgtggg aacgcatggt gcgttccgta aaaaccgcga tgtttgctgc ctatgaaggc      5520
     aatcgcaaac tgactgatga agggctgcta accttaataa ccgaagcgga agctatcgta      5580
     aacagccgac ccttaacata catgccgcta gagtcagcag aatgtgaggc actcacacca      5640
     aatcactttt tgttgccatt gggaagctcc ggcgacatac tgcagcgatc atccgacgaa      5700
     aaaactacga aggtggacca cagagaagca gcggcgattg tagaggcaac ctggaacgct      5760
     acgcaacagc atttggatat gttttggaag cgttggattg cagaatatct gccgacattg      5820
     acgaaacgca cgaagtggtt cggagagcaa agagcgatta ctgtaggaga cttagttctg      5880
     gtgatagatg gtgggccccg aaacgaatgg gtccgcggcc gtgtaagaga agtcatagta      5940
     ggaaatgatc gtagaatccg tcaagcgata atacagactg cgagggggtt gatgaaaagg      6000
     ccggtagcaa aacttgcgat cttggaagtt aaggaaagtg gctagggttg gtaaaactgg      6060
     actggtggcc agtattacgg gggggagga                                        6089
//
ID   BEL-689_AA-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-689_AA-I;
KW   BEL-689_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-521
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-521
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 293-293 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 521 BP; 182 A; 88 C; 95 G; 156 T; 0 other;
     tgttaccaac tgggagcact gctgggtgaa cgcatactga cagagttgtc agcgaaacct        60
     gtcaaatgtg aaactgcact cattatcatt tgtgcactaa aatcgatcag gagttgcgta       120
     aggagaacaa ttgattgtta attgaatttg ttggtaaaat ttattcttta tttctatagt       180
     tgctaaaaaa tctaatcacg ctatcgtaaa attcggccta aatctaaaag tatcacagtt       240
     tatatcacag aagaagtaag ttacactaaa ttgaattgtc acactattcc taacctaaaa       300
     actaaatcac agactgtagt aaacgtgctt gaggaacaat agggcatcat caaggaactt       360
     aaattacgct ctagaccgaa atatgtaagc taccgaaata tgtgtactat tatgaactaa       420
     aactaattga ataaaattta tagcttatag ctgtttcgca caaagtaacg tgtttgcgat       480
     ctgctgatag aatcggtgaa gagtccttgt tcttcggaac a                           521
//
ID   BEL-68_AA-I repbase;    DNA;    INV; 2604 BP.
XX
AC   supercont1.93;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_AA_;
KW   BEL-68_AA-LTR; BEL-68_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2604
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.93; Positions  113214  110611.
XX
CC   'GTTTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           15..2381
FT                 /product="BEL-68_AA-I_1p"
FT                 /translation="MMSTPSQDTERTVYSCAGCHHPDDDEKDMVFCDHCQQ
FT                 WYHLRCVGLSANEKDVSWSCEECLRRRADKEESPGLVLELGNLEREMEKEI
FT                 RALETQKILHRKRLEHKNKLFLLRQQVENEKRDMELAYEMEQMKQLVADEE
FT                 AHQKKREEALKQLQEKFEKVKRDSEQLELVARTIDKEAFGLRSGRRIEGRK
FT                 FEQIEPGTKKPDGRKQKSCHSGRKTIDGESRRVVSGKKRSQRNSYRQKKQP
FT                 YMGSEDSDSTNASNEGKYEENSDDSEDESSSNAERFLQDESSSLESRKSPK
FT                 TTMRNPTKAQLSARQFLSKKLPTFSGRLEDWPMFISAYETSNTACGFSNVE
FT                 NLARLQECLKGQALETVRSRLLLPSAVPQIIETLRMLYGRPEQLMRMLLSK
FT                 VRKAPSPRADKLSSYIQYGVVVQELTDHLEATGLTAHLVNPMLIQELTEKL
FT                 PANLQLEWVRYRRKAQSVTLRTLSKFLSRLVNDASEITSYCEAQGEATLSE
FT                 EEEEDFRKYERKEQEGFLHTHIAEDNRTKEQQSYRKKTACRICGRYDHRVR
FT                 NCETFKKLNLTERWEMVRKWRLCYSCLNEHGSVPCKLNFQCNIERCGEGHN
FT                 TLLHIEQTGFMDCNESAPHSTSVVFRTMPVRLYNGKRTVDTIAFLDEGSSH
FT                 TLVEKSLADELQAKGTPQQLRVTWTAGVTRLEKDSRNVELWISARGSSKRV
FT                 HIKAAHTVHSLKLPKETVEIRKVINEYSHLRELQEAEYEQGVPQILIGLKD
FT                 VHLCAPLESKIGKPDEPIAVRSKLGWSIYGPVSEVIKE"
XX
SQ   Sequence 2604 BP; 844 A; 492 C; 693 G; 575 T; 0 other;
     ttcttgaaaa tgttatgatg tcgacaccga gtcaagatac tgaaaggacg gtttacagct        60
     gcgcgggatg tcaccatccg gatgatgatg aaaaagatat ggtattttgt gaccattgcc       120
     aacagtggta ccatttgcga tgtgttggtt tgtcagccaa tgagaaggat gtttcctggt       180
     cctgtgaaga gtgtctgcgc cgtcgtgccg acaaagagga gtcacctggt ctagtattag       240
     agttgggaaa ccttgagcga gagatggaga aggagataag ggcactagaa actcaaaaaa       300
     tcttacacag gaaaaggtta gagcacaaaa ataagctgtt tttgttgcgg cagcaggtcg       360
     agaatgaaaa acgtgatatg gagttagcgt acgaaatgga gcaaatgaag cagctcgttg       420
     ccgacgaaga agcgcatcag aaaaaacgcg aagaagcatt gaagcagctt caggagaaat       480
     ttgaaaaggt taaacgtgat tcggaacagt tggagctagt agcaaggact atagataaag       540
     aagcattcgg attgagaagt ggaaggagaa tagaaggcag gaaattcgag caaatcgaac       600
     cggggacgaa aaagccggat ggaagaaagc aaaaatcatg ccattcaggc cggaaaacaa       660
     ttgatggaga atctcgtaga gtcgtcagcg gcaaaaaacg atcgcaaaga aattcgtatc       720
     gacagaagaa acagccgtac atgggttccg aagacagcga ttcaacaaat gcatcaaacg       780
     aaggcaaata tgaggaaaac tccgatgatt cggaagacga aagttcgtca aatgcagaaa       840
     gatttttgca agacgaaagc tcgtcactag agagccgaaa gagtcccaaa accaccatgc       900
     gtaatccaac aaaagctcaa ctgtctgcac ggcagtttct ctcaaaaaag cttccgactt       960
     tttctggacg acttgaagat tggcctatgt ttataagtgc ctacgagacg tccaacacag      1020
     cttgtgggtt ttcaaacgtc gagaatctcg ctcgacttca ggagtgcttg aagggccaag      1080
     cactggaaac agtgagaagc agactacttc ttccgagtgc agtgccgcaa atcatcgaaa      1140
     ctttacggat gctgtacggt aggccggaac agttgatgcg catgctgtta tcaaaagtaa      1200
     ggaaggcacc atctccgaga gcggacaagt tatcatcgta catccagtac ggtgtagttg      1260
     ttcaagaact tacggatcat ttggaggcaa ccggtttgac agcgcatctg gtgaatccga      1320
     tgctgattca agaactgacg gaaaagctgc cagccaactt gcagctagag tgggtccggt      1380
     atcgtagaaa ggctcaaagc gtaactctcc gaactctgtc caaatttcta tccagactcg      1440
     ttaacgatgc cagcgaaatt acttcatact gtgaggctca aggtgaagca acacttagcg      1500
     aagaagaaga agaagatttc cgtaaatatg agagaaaaga gcaagaagga ttcctgcaca      1560
     cgcacatagc tgaagacaat agaacgaagg aacaacagtc atacaggaag aagacagctt      1620
     gcaggatttg tggccgctat gatcatcgtg ttcggaattg cgaaaccttt aaaaaactca      1680
     atttgacgga aaggtgggaa atggttcgaa agtggcggct ttgctattcg tgcctgaatg      1740
     aacatggaag tgtcccatgc aagttgaact ttcaatgtaa tatagaacga tgtggtgaag      1800
     gccacaatac actgttgcat atcgagcaga caggtttcat ggattgcaac gagagtgccc      1860
     ctcacagcac gtcggtagtt tttcgcacga tgccagtcag attgtacaac gggaaacgca      1920
     ccgtagatac tattgctttt ctggacgaag ggtcgtcgca taccctggtg gaaaagtcat      1980
     tagcagacga gttacaggcc aaaggcactc cgcaacagct acgggtaact tggactgctg      2040
     gcgtgaccag gttggagaaa gattcgagaa atgtggagtt gtggatttcg gcaagagggt      2100
     cgtcgaagcg tgttcatatt aaggccgctc atactgtaca tagtttaaag ctaccaaaag      2160
     aaactgtaga aatacgtaag gtaatcaatg agtattctca tctgcgcgaa ctgcaagaag      2220
     cagaatacga gcagggtgtt cctcaaatac tgataggact gaaggacgtt cacctttgtg      2280
     cgccactcga atcaaaaatc ggtaaaccag atgaaccgat cgccgtgaga tcaaagctag      2340
     ggtggtcgat ttatgggcct gttagcgagg taatcaagga gtgaatggat attatcattg      2400
     tgaaaatatt gtgaagtaat cacgtgttca atgcaaaaaa cgaacacagt ggaaactggt      2460
     taaggcatgt gaacttaaaa tctgtaaaga agaaggcaag tacaaagcgg ataggtctgg      2520
     tgtagaagtt ggtggtgctt gcgttcaata attgtaactc tggcgacagg gatgaatccc      2580
     agctagaatt acggggaggg ggta                                             2604
//
ID   BEL-68_AA-LTR repbase;    DNA;    INV; 479 BP.
XX
AC   supercont1.93;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_AA_;
KW   BEL-68_AA-I; BEL-68_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-479
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.93; Positions  110610  110132.
XX
SQ   Sequence 479 BP; 183 A; 67 C; 107 G; 122 T; 0 other;
     tgtacgcacc accaaacatt gaaaacccta cgtttcttgc acctgctggt gtgtattaga        60
     caatgactat tggttggtgg aattggagat gaagtaggtg aaaatttggt agttgaatta       120
     tcccggaggg caaagtaaat ataaaaaggc aaagctctgt aaacaaacga aagcaacaaa       180
     ttgatttagt ttaaagatgc agataaaaag tgcggggaaa tagttgaggg taaaaagtat       240
     ataagttcga tatagtgatt aagaaacagt tcgtgagtgc ttcgttggca gcgcctgcca       300
     ccgatgccaa gaaaaagacg aaaataatta gatttggtaa agaaaccata acatgtaagc       360
     aaggaatata actaaattaa ggggaaaaat attaataata aaattatagt ttcaagcttc       420
     gctacgagaa tcgctgctgt gaaaattatg gttgatttcg aaaatcacta gcccgaaca        479
//
ID   BEL-68_CQ-I repbase;    DNA;    INV; 6044 BP.
XX
AC   AAWU01019429;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_CQ_;
KW   BEL-68_CQ-LTR; BEL-68_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6044
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 289-289 (2011).
XX
DR   GenBank; AAWU01019429; Positions   52731   46688.
XX
CC   Positions [5078-5467] - Integrase core
CC   'CGTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..5467
FT                 /product="BEL-68_CQ-I_1p"
FT                 /translation="MSNKSDSGVNAGAGSTAKKWKTCGKCGKPGQSRMVTC
FT                 SECQSSFHYECVRITSEVLDGPWVCNGCLRRTIEANNNVLQIKLQEEQQKR
FT                 MQHDQQQRQLERQWRELNPDLNPQQSRNVEFLRLGDQIVKIVRQGDSPLAE
FT                 STPVNLDSELAPRQDWMEARLRQLDNYNQDLLNQIDMLQRLNPQGTESGAR
FT                 NPLYEFPPPNNGSGGKTDAVRGRPSGLLDPIPERKEPAPSTSESVGSIATK
FT                 VSRGSVALRAQRLKALEERQALERKQLEEKLALEQELLEQETVAGSDVEQD
FT                 GSASKSDRNSSTDSNFLNITNWLEDLERSGEGAVSTPRGNRTKEEGRSRPD
FT                 SSEQRDSVSLPTDQHHPPPKNPARLNSNQLAARHTVKDLPRFNGDPEDWPR
FT                 FIAAYERTTRMCGFGNDENLDRLERSLYDRALFYVKGLLLYPENVPLIIKT
FT                 LEIHCGNPELIVETMVQRVRAMSPPKADQMETIIDFGIAVQNLCATMTACR
FT                 MNECLYNVALLQELVERLPPTIKINWALHRKSKKTVSLADFGEWLGTLVEA
FT                 LSKVTRPPAGPKHQIGQRDRRNEQIHVHSDDVKERNASKGCHVCKEDCQSL
FT                 EKCGEFGKMSPLSRWKLIKEMDICRKCLKKHIRACDSKVPCGTNGCPFLHH
FT                 KLLHDDAKHKLPEQVTQDKPKEDCNAHQCCLGSVLFKYVKITLHGNGKSVP
FT                 TYAFLDSGSTCSLMEHSLWEELGLDGEKQPLCIGWTAGQGRYEANSVRCTV
FT                 DVSGTTGKRRNRLKKVHTVESLQLPEQTMNIDDLSEHYGHLANLPVESYAN
FT                 VRPRILLGMDNAYLDQPLEAREGGENQPVAALTRLGWTVYGPCSVAEETQA
FT                 ATEFNYHICQCETLQAEMKQYFMLDSLGTQIPSKPLLSKDDERAVDMLKKR
FT                 TILDGDRYRTGLLWKFDDVKLPDSRPMALNRLRCLEKRMIREPELATALQA
FT                 KIEDYEQKGYIRKLTDAEERADRDRVWYLPIFVVTNPNKPGKLRIVWDAAA
FT                 EVRGISLNSVLLKGPDQVTSLVDVLLRFREYRTAVTGDIKEMFHQVRVHPD
FT                 DQHCQRFLWNNGAPGSTPSVYVMQVMTFGASCSPSCAQFVKNINAERFAED
FT                 SPAAAKAIINDHYVDDMLSSVETEQEAIKLASSVRDIHGQGGFEIRGWRSN
FT                 SKAVLAALNSQECEDKNLSEASQFSTEKVLGMWWDSSTDTFTFRLPTKPDK
FT                 DLLNGLRVPTKKEVVRVLMSIFDPLGLLANVLMFLKVLIQEIWRSGIGWNA
FT                 TITPEQYEKWLVWLKVIEKVEAVSIPRCYRQITSSSSKTNVQLHTFVDAST
FT                 NGCATVAFLRFEEEDRIECAFVAGKTRVAPNKLTSIPRLEIDAGTMGVRLA
FT                 QKIMEGLRIVIHQRFFWTDARDVLCWLHADHRNYSQFVGFRVAEILEKSNL
FT                 AEWNYCPSKLNPADDGTKWTKIPDLSEKSRWLHVICFIQQKMSEWPNKLIH
FT                 IGTTTTELKHSVGVHCVTAQVINPEDFSTWKRLLRYTVHCKRYVRNLKETT
FT                 SNRPRTTGEITQEELLAAEAYLHRLAQEAEYIEEIAILIKAGKGNPNGLQI
FT                 PKGSPIFKLSPYLDQFGVLRMQGRTVACEFVDHNAACPVILPRNHHITQLI
FT                 IRSMHFRYHHLNHETVVNELRQKYRIPQLRRACFAVRASCQDCKNRYARPS
FT                 PPLMAELPPARLAAFTRPFSYTGVDYFGPISVAVGRRVEKRWGVLLTCLVT
FT                 RAVHIEIAHTLTTDSCILALRNFMAIRGTPLELISDQGTNFIGADRELKKA
FT                 YQKVDQNQLIREFTTTNTKWTFNPPSSPHMGGSWERLVQSR"
XX
SQ   Sequence 6044 BP; 1706 A; 1532 C; 1573 G; 1233 T; 0 other;
     tcttaatttt tccgtttaat caactgccgg aatgtcaaac aaaagcgatt caggtgtcaa        60
     tgcgggagct ggatccactg ccaagaagtg gaaaacgtgt ggaaaatgtg gcaaacccgg       120
     tcaatcgcgg atggttacct gtagcgaatg ccagtcttcg ttccactacg agtgtgttcg       180
     gattacgtcc gaggtactgg atgggccctg ggtctgtaac ggctgcttga gaagaaccat       240
     cgaagcgaac aacaatgttc tccagatcaa gctgcaagag gaacagcaga agaggatgca       300
     acacgaccaa cagcagcgcc agttggagcg gcagtggcgt gaactaaatc cggatctgaa       360
     ccctcagcag tcaagaaacg ttgagttcct gagacttgga gatcaaatag ttaaaatcgt       420
     gcgacaaggt gattctccgt tggcagagtc tactccagtt aacttggatt ccgaactagc       480
     gcctaggcaa gactggatgg aagcacgttt gcgccaactg gataattaca accaagattt       540
     gctcaaccaa attgatatgc tgcagcgatt gaacccacaa ggaactgaat cgggcgctag       600
     aaacccattg tacgagtttc caccacccaa caatggatca ggtggaaaaa cggacgcggt       660
     tagaggcaga ccgagcggtt tgttggatcc gatcccggag cgaaaggaac cagcaccatc       720
     tacatcagaa tcggttggat cgatcgcaac gaaagtgtct agaggatctg tggcactgcg       780
     agcacaaaga ttaaaagcgc tggaagaaag acaggcactg gagagaaaac agctcgaaga       840
     aaagctagcg ctcgaacagg aacttcttga gcaagaaacg gtcgctgggt ccgatgtaga       900
     acaggacggc tcggcgagta aaagtgaccg aaacagctca actgattcca actttctgaa       960
     catcaccaat tggctcgaag atctggaaag atccggcgaa ggggccgtat cgacgccacg      1020
     aggaaaccgg accaaggaag agggccggtc aaggccagat agctctgagc aacgtgactc      1080
     ggtgtcactt cctactgatc aacaccatcc tccccccaag aatcctgcac ggctgaacag      1140
     caaccaactg gcggcacgcc ataccgtgaa ggatcttccc agatttaatg gtgatcccga      1200
     ggattggccg cggttcatcg cagcctacga gcggacgaca aggatgtgcg gattcggcaa      1260
     cgacgagaac ctggaccgat tggaacgcag cctgtacgac cgcgctctat tctatgtcaa      1320
     agggctgcta ctctatcccg aaaatgtacc actaataatc aagacactcg aaatccactg      1380
     cgggaaccct gaacttattg tggagaccat ggtgcagcga gttcgagcga tgtcaccacc      1440
     gaaagctgat cagatggaga caatcatcga tttcgggata gcggttcaaa acctatgcgc      1500
     tacgatgacg gcttgccgaa tgaacgagtg cttgtataac gtggccttgc tgcaggagct      1560
     cgtcgagcgt ctaccgccaa cgataaagat caactgggct ctacatcgta aaagcaaaaa      1620
     gaccgtgtca ctggcagact ttggtgaatg gctcggtaca ctggtggagg cgctaagtaa      1680
     ggtcacaagg ccgccagctg ggccgaaaca ccagatcggc caacgggacc gtaggaatga      1740
     acaaatccat gtccattcag acgatgtcaa ggaaagaaac gcttcaaagg gctgccacgt      1800
     gtgtaaggaa gactgtcagt cgctggaaaa gtgtggcgaa ttcggcaaga tgtcgccact      1860
     atcacgctgg aaactgatca aggaaatgga tatctgccgc aagtgcctga aaaaacatat      1920
     cagagcgtgc gactctaaag tcccttgcgg tacaaacggt tgcccattcc tgcaccacaa      1980
     acttctccac gacgacgcca agcacaagct tccggaacaa gtaacccagg acaaaccgaa      2040
     agaggattgt aacgcacacc aatgctgcct aggatcagtc cttttcaaat atgttaagat      2100
     aacacttcac ggaaacggaa agtccgtccc tacatatgct ttcctcgaca gcggatcgac      2160
     atgctcattg atggaacaca gtctctggga ggagctcgga ttggacggcg aaaagcaacc      2220
     gctgtgcatt ggttggaccg ctgggcaagg tcgatatgaa gctaattcgg taaggtgcac      2280
     ggtcgacgtg tccgggacca ctgggaaacg acgcaatcgg ctaaagaaag tacacacggt      2340
     cgagagtcta caactacccg agcagacgat gaacatcgac gacctctcgg aacactatgg      2400
     acacttggcc aacctaccag tagaatcgta cgcaaacgta cgcccgagga ttctcctggg      2460
     gatggacaac gcctatctcg accaaccgct cgaggcccgc gaaggtgggg agaatcaacc      2520
     tgttgctgct ctcacaagac ttggatggac tgtatacggc ccttgctcgg tggcagagga      2580
     gacacaggca gctacagagt tcaactacca tatttgtcag tgtgagactt tgcaagctga      2640
     gatgaagcag tatttcatgc tcgacagcct cggaacacag attcccagca agccgctgtt      2700
     atcgaaggac gacgaacgag cagtggacat gttgaaaaaa aggacgattc ttgatgggga      2760
     tcgatacaga actggactac tctggaagtt cgatgatgtt aaattgcccg attcgagacc      2820
     catggctctg aaccgtctgc ggtgtttgga gaagcggatg attcgggaac cggaactcgc      2880
     cacagctctg caagctaaaa tcgaggatta cgaacagaag ggatacatta gaaagctgac      2940
     ggatgcagaa gaacgggcgg atcgagatcg tgtgtggtat ctccctatct ttgttgtaac      3000
     caacccaaac aaaccgggaa aactgcgcat tgtgtgggac gctgcggcag aagtaagagg      3060
     catatcttta aactcagttc tcctgaaagg cccggatcaa gtcacgtcac tggtagacgt      3120
     tctgctgcgt ttccgagagt accgtacggc tgttaccggt gacataaaag agatgtttca      3180
     tcaagtgagg gttcacccgg acgatcaaca ctgtcagcga ttcctgtgga acaacggcgc      3240
     gcccggctca actccgtccg tctacgtcat gcaggtgatg acattcggtg ccagctgctc      3300
     tccaagttgc gcgcagttcg tcaagaacat aaacgcggag cgctttgcag aggattcacc      3360
     agcagctgcc aaggccataa taaacgacca ctacgtagac gacatgctga gcagcgttga      3420
     aacagaacaa gaggcgatca agctagctag cagcgttcga gacattcacg gacagggtgg      3480
     gttcgaaata cgcggatggc gatcaaactc aaaagcggtt ctcgcggcgc taaactcaca      3540
     ggaatgcgaa gataaaaatc tcagcgaagc ctcgcaattc tcaaccgaga aagtactggg      3600
     catgtggtgg gattcgagca cggacacgtt cactttcagg ctgccaacaa aacctgacaa      3660
     ggacctgctc aatggcctcc gcgttccaac gaaaaaagaa gttgttcgtg tgctgatgag      3720
     tatcttcgac cctcttggcc tgctggccaa cgtactgatg ttcctgaagg ttctaatcca      3780
     agaaatttgg cgctctggaa taggatggaa tgctaccata actccggagc agtacgagaa      3840
     gtggctcgtt tggctgaagg taatcgaaaa ggtggaggcc gtgtcaattc cgagatgcta      3900
     tcgccagata acgtcgagct cgtcgaaaac aaacgttcaa ctgcacacct tcgttgatgc      3960
     cagcaccaac ggatgtgcca ctgtcgcttt cctgcggttc gaggaagaag accgtattga      4020
     gtgcgcattt gttgccggca aaactcgagt tgctccgaac aaactgactt caatacctcg      4080
     gctggagatt gatgcaggaa ccatgggagt cagactagcg cagaaaatta tggaaggact      4140
     tcgaatcgta atccatcaac gattcttttg gaccgatgca cgagacgtcc tgtgctggct      4200
     gcatgcggac cacagaaact acagtcagtt tgtcggtttc cgtgtcgctg aaatactgga      4260
     gaagtccaat ctggccgaat ggaactactg cccaagtaag ctgaacccag ctgatgatgg      4320
     gacaaagtgg acgaaaattc ccgatctttc ggagaagagt cggtggctcc atgtaatctg      4380
     cttcatccag caaaaaatgt cggaatggcc caacaaactg attcacatcg gtacaacaac      4440
     aacggagcta aagcactcag tgggagtaca ctgcgtgacc gctcaagtaa tcaaccctga      4500
     agatttttct acctggaagc gactcttgcg atatacggtt cattgcaagc ggtacgttcg      4560
     caatctgaag gaaactacga gcaatagacc acggacaaca ggtgaaatta ctcaagaaga      4620
     actcctcgcg gcggaggcgt acctacaccg gctggcacag gaagctgaat acatcgagga      4680
     aatagcaata ctcatcaagg cgggaaaagg taacccgaac ggtctccaga tcccaaaagg      4740
     cagcccaatc ttcaaactct cgccatactt ggaccagttt ggtgtactgc ggatgcaagg      4800
     gagaacggta gcatgtgaat tcgtggatca taacgctgct tgtccggtta ttcttccaag      4860
     gaaccaccat atcacacagc taattatcag atcaatgcac ttccgatacc atcatctaaa      4920
     tcatgaaacg gtcgtcaacg agctgaggca gaagtacagg attcctcaac tacgccgtgc      4980
     gtgctttgcg gttcgagctt cgtgccaaga ttgtaaaaac cgttatgctc gcccgtcgcc      5040
     tccgctcatg gccgaactcc ccccagctag actagccgca ttcacgaggc cgttttctta      5100
     tactggagtg gactattttg gtccgatttc cgttgcagtg gggcgacgag ttgagaagcg      5160
     ttggggtgtg ttgctcacct gtctcgtgac aagagccgtc cacatcgaga tcgcacacac      5220
     acttactacc gactcatgta tacttgcttt gcgcaacttc atggccattc gtggaacacc      5280
     actggagctc atcagcgatc aagggacaaa tttcatcggt gcagatcgcg aactcaagaa      5340
     ggcctaccaa aaggttgacc aaaatcagct catcagggaa ttcacaacta ccaacaccaa      5400
     atggaccttc aacccaccaa gttcgccaca catgggagga agctgggaga ggctagtcca      5460
     atcgcgttaa aagtcctgaa ccaaatgaaa ctcccgcgaa acccctcgga tgaagtgcta      5520
     agaaacaccc tgctggaaat ctcgaacatc gtcaactcac gccctctaac ttacatccca      5580
     gtcgaggacg ataacacccc cgcattgaca cctaaccact tcttgcttgg ttcatccagt      5640
     ggttccaaac cacttgtcgc attcgacaat gggcacaccg cgctacgtaa caactggaag      5700
     gcgtcacaga tctacgccaa cttgttctgg aagaaatggg taaaggagta tttgcccaca      5760
     atctgccgac gcacgaagtg gcatcaacca gtgaaaccta tccaggtggg cgacgttgtt      5820
     gtcatcgcag atcccgatca ccctcgcaac agctggccca tgggacgtgt cgtcagcact      5880
     aacaccagca aggacggcca ggtacgtagt gcagtcgtgc gtacgagcga gcggttctac      5940
     gaacggccgg cggtaaagct tgctgttctt gacgtcggtg ttaatgaagg taagctgcca      6000
     caagttccca gcgtaccggg ggggaatgtt acgtcacttg gacg                       6044
//
ID   BEL-68_CQ-LTR repbase;    DNA;    INV; 810 BP.
XX
AC   AAWU01019429;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_CQ_;
KW   BEL-68_CQ-I; BEL-68_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-810
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 290-290 (2011).
XX
DR   GenBank; AAWU01019429; Positions   46687   45878.
XX
SQ   Sequence 810 BP; 271 A; 186 C; 148 G; 205 T; 0 other;
     tgctaccgac gacaacaaca cctccgaggc aggcacctct cggatgaacg actcgaaagc        60
     agaacccaga aacgcagcca cacccgaagc tagagaaggg atcgacgaac aagcagtgta       120
     acgaaataga accaatacca ccaccaggaa taaaaggcgc tagggacaat agatgcactt       180
     ttactctatt gaatctatcg tgtaaactcg cagtaggccg acgcttcact gaaaattaat       240
     ttctagcttt cgtacgcatc ttatttacct agtttaagga taattgtgct tgagaaaact       300
     gtttttagag cacctgcacg caggtactaa tgcgacatga atttattgcg aaattactaa       360
     ttatcaacat atctctaacc aggtcgtaag cacattctat tgcccagaaa aagcgcaaca       420
     aactctagcg aattctatta taattaacta ttaagtaaac tgtcgatcag gtaaagcgta       480
     acttgcgatg attaactgcg ggaatctaat atctatgaat tctatagcgc accggctgac       540
     acgaaccgca tgttgatcat tccggcttac gagcggacat agggcactaa acgtaagcaa       600
     acaaacttat ctagataagt ttcactgaat tcctgtactg aattacctct attttccttc       660
     ccaaacatgc attttaggga aaaattaata cgtcgaaata aagttgtact ccttactcgc       720
     aaaattgaag tcaattcacg tagccacttc acgtacaacg gagcgtattt aatcgtctgg       780
     aaatcctaag cccacagtta ccttgtaaca                                        810
//
ID   BEL-68_DTa-I repbase;    DNA;    INV; 5458 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5458
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (27-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 94% identity to
CC   each other.
XX
SQ   Sequence 5458 BP; 1618 A; 1420 C; 1184 G; 1236 T; 0 other;
     tatggtggcc catgaggaga tactgaaagt ttgaacgtcg cgcctagaac aaccacacgc        60
     cagtatatca tttctaatat gtgcgtttaa ttcattcaag tctacattta ttcatccgtg       120
     caaaataaaa gaataaaaaa cccccaatta aaatattatc ggtgtccaag ttcaacgaac       180
     aaagggagaa gcaacgccca aaatcaccaa ccgcaagatt taccgcaagc tcaaaacgaa       240
     cgttctaacc cgctacacgc ggtctgaagt ttggcaacgg tgcgcagctg gtcagtggct       300
     ctaaaactgg aactcaaact gtaataaaga gtaaaaatgg tcgacactac tgaactggat       360
     ggtttagcca aaccacaagc ggaccgtcac gctcttaagg caactttaca gtgtttccgg       420
     aaggatgcta tgtcccggaa aacagcgatt tatttccaga agcgcctgca gaaagtagat       480
     gacttgaaga cgaacttttt agagacacac acaaggatgg tatgcaccga gggattcgag       540
     gagacgccgt attatctaaa ggatttggcc tttgagtttg aagaacgcta tttggaagaa       600
     tattgcacta tcgacgaaag ctaacacccc agccattgca taaagcagaa cctgcaatac       660
     gtgttaattt gccccaaata cctgtaccca agttctcggg taacatcatc gaatggcccg       720
     ggttttacga cgcattctcc cgactgattc atgataacca acaacttagt gatagtcaaa       780
     gatttcattt tctgaaagat tcccttcccg caggtcgaga ttgcgacatc caacagatcc       840
     agctgaccga cgccaattac caggtggcat ggtcgacgct cattaagcgg tataataacc       900
     cacgcatcgt atttgcacac cacatgaatg cactgtacaa cttgtcgtct cttcataagg       960
     agaaggcgga agatctacga tctctgttaa gtaccgtaaa agtctgcacg ggagcacttc      1020
     agcgcatcag tggtatggcc aacgaaccca ctcattggcc actacgtatc tacaaaattt      1080
     ccgaaggaga cgcatacggc gtgggaacat tatcttgaca gcaacacaga ggtgccgtca      1140
     ttcctgaaac tggagcagtt cctaaatgac cacctcgtca cgatcgatgc gattgaaaac      1200
     cgaaacgcct catttgcgca acagattcgc ccgtccacgg actccactag acgtatccaa      1260
     tgtcacaata cgcaaacgcg agctcccagc agccttcgtt gcgtgcattg cgggtccagc      1320
     cacatcctcc gcattcctgt ccatggactc gtatcagcga agggagttag ccatccggtt      1380
     caaactgtgt attaactgtt tgggaacctc acatacgcat tcacggtgca caagtacgcg      1440
     gaactgtcaa caatgtggtc agcgtcacca tacgctcctg caccacccac agcgtccgcc      1500
     acacccatcc agcctgcatt caccgcagca caaactccac agttcaggaa ctccagcctg      1560
     aactgtctca ctgcagtttc ttctaacgca ccaatacgga gcattttact agcgaccgct      1620
     tgagtccata tcatcaatcc aaaaaccgga caagaagcca cgatcaacgc cttcctggat      1680
     catggatccg aagaaaccct agtctcggaa catacagtcc atcactacgt cttaagaagg      1740
     tttaagaagg tttttgcagg agttggagca attaagactc agcagtgcaa gggcaccgtt      1800
     agcttcagca ttcgcccacc gagcagcagc tcacccagtt taaaagtcgg aactgcctat      1860
     gtactcaatt ccttaacagc gttttggccc ggccatagca tcctctctcg aaactgggaa      1920
     catctcacgg gccttgagct agcagacccg caattctacc gctctaaacg aatcgacata      1980
     ataatcggag ctgatttgtt gtcccaaata ttgttgccag gcctgcgcac cgggtcagca      2040
     gcccatggca caatacacaa gcttcgggtg ggtcctgtcc ggacaagcag gatctgccga      2100
     acctaaccaa caactgcatt gttatcacac cgcaatagac acagaacatt tattaaaaca      2160
     gttttgcgaa atagaagcag ttccggaacg tcatcctctc tcacctgaag agtcttggtg      2220
     cgaagaattc tttaaagaaa cccaccggcg cctagacagt ggacgttatg aagtcagatt      2280
     gccgttcaaa acgctttttg acccagaaat gaccatcgga cgatcacatc agatggccct      2340
     atatagattc ctacacctgg aacgccacat taaacgatca ccagatgagt ggatccgtta      2400
     tggaaacgga attaacgaat actttgaatt aggccagata acgcaagcga agagtaccga      2460
     gcgacagaac acaaaagtaa gcgctaacaa catatcggta tcttcttgtg tgcttccaca      2520
     tcacgcggtt ataaaggaag aaagcctatc caccaaacat aggatcgtgt tcgacgcatc      2580
     cgccaagact tccaatggtc ggtcactaaa cgacattctg tgtgtgggac gagcattgca      2640
     aaataacctg gctgccgtca ttatgaattg gaggaaatac ccgtacgcat tcacagcaga      2700
     catccagaag atgtatcgat gcataacata catcacaacg actatcagta ctaacggatc      2760
     ccttggaggg cagccgacgg cgaaatcaac gaatattgtc tcacaacggt aactttcggc      2820
     acagcatccg ccccgtttac cgcgattcga gtgctgcatg aaattggcga agacgaaaat      2880
     agcagaaatc cgagagcaag acatgtcctg aagcacgaga tgtacgtcga tgacatgctt      2940
     accggcgact atacagttga ggcagcaaag gacaaaatgg agcaagtatc tggagccctc      3000
     caaaatgcat gcatggagtt aaggaagtgg gcgagcaaca gtccatcctt gttggcagaa      3060
     attcccgtcg agcacagatg cacagatact cagctacaaa aggacagtga ggaccaggtc      3120
     aaaacattgg gaatgtactg gattcaagta tagatgtgtt caaatacaaa atccttcaca      3180
     gacctccgat catcaatacg aaaagactaa tcctatctaa tatctcacga ttattcgacc      3240
     cgctcggcct gattaccccg attaacatac cggctaaaat tatattaaag gaaataatgg      3300
     tgtcaactat cacacagtgc gatggaacca tcaccggatt gcaatgggat gacccagttc      3360
     cttcgcatct cgcgtcacgt tggacgcagt ttctcaatga tttagatgac atcaaaacca      3420
     tcactatatc acgctggacc gaactctcct ccgacttcgg agagcgttat caaatccacg      3480
     ccttttgtga cggctcatcc gtagcctacg cagcggcagt ctacttacgt gtacagcaaa      3540
     ctaattcaca ttatgtttcc ctacttacag ccaaaagcaa agtttctcct acgaaacccc      3600
     taaccattcc aagaaccgaa ttaagcggag cagttctcgc cgttaagctg gtacgatggg      3660
     tattggaaaa taatacatgg accgacgagc ccattccggt attctgctgg acagatgcaa      3720
     ctatcgtttt acattggata aacggagacc caaatcgttg aaaaactttt gtggcaaaca      3780
     gggtggcata tatccgtgca cactcaaacc cacaccaatg aagacacgtg agcaccaacg      3840
     aaaatcctgc cgatcttgcc actcgcggga gaagtcccaa ggagctttct acatcgtccc      3900
     tgtggtggaa cggcccagct tggttgagtc tcaacgacaa tgattggcct accaattcca      3960
     tcccaccaat tgtcgaccca agtattttag aagccaaaac agacaagatc aacatccaca      4020
     tgctcgtaaa ggaagacagc attctcaaac gctattcaac ctttagccgt ctgatccgca      4080
     tgaccgccta cattctcagg tttagtataa attctcggca caaggctgat cgactgaatg      4140
     gtcatctaaa attaagagaa ctcaatgacg ccctcctcgg catagttcga ttggttcaag      4200
     ctgaatcgtt tacagcggac ctaaaggcaa tacgttcttc taaaccactt ccgaagctaa      4260
     gcaaactacg aaatctaaac ccattcatcg aagataacgt tcttcgcgtg cgtggccgct      4320
     taagtcacgc gcaattatcg ttcaatcgta aacatccgat aatcttacca gcactcattc      4380
     acagatcttg tcattaagga tgcacatcat gccacgcttc atggaggagt tcagctgacc      4440
     ttagcgcaga cacgtttacg cttttggatt gtaaacggac gcgtagctac caaaaggatg      4500
     atgcgaggat gcaagcaata ttttcgtgct tgcccaacaa ctggcaagca actcatggga      4560
     aatttgccga ctcatcgaat caacccgcca tgtcgtccct tttgggctac cggcatcgac      4620
     tacaccggag ccattgaact aaaggctgcc cgactgagag gaacagcaac gtataagggt      4680
     tatatcgcca tattcatctg tttggctgtc caaggctgtc cacctggagg tagtcaccgg      4740
     gctcacatcg gatcatcttc tgtgggcact ggatcggttc ataggacgac gcggacgatg      4800
     tcgtcacata tatagcgaca atggcaccaa ttttgtgggc gcggacaaag cacttcggaa      4860
     tgaactctca aggcagcggg acaacgagaa cacggccgca gcaagattag ttgacaagca      4920
     aattgaatgg cactttagcc cgcccccatc gccgaatttt ggagggctgt gggaggcgaa      4980
     cgttaaatca gtcaaacacc atttgactag aatggctgga agctcctgcc tcactaatga      5040
     agagttttcg acggtactca tacgcataga agcatgtctg aattcgcggc cactgtgccc      5100
     ccttaccgca gaccccgaag atctaagcta cctcactcca ggacattttt taataggcga      5160
     tgccatgtag agccccatca actaagttca aagaaacctt tctcaaccag caaaggatga      5220
     tccatgggtt ctggaagaaa tggactcaga attggcttgc ccatttgcag aaacggccaa      5280
     aatggtgtga agtcacagaa aatctgcaac tcaatgacct ggtgattctg aaggatgacg      5340
     ggactccgcc tgctcaatgg aaattagggc gaatcattca gttacatccc ggcttgcatt      5400
     ctacagcgct gactcaacga gaatcatatc atgctacctc gagcattgcc gggcggcg        5458
//
ID   BEL-68_DTa-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-68_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5681-5681 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identity to consensus.
XX
SQ   Sequence 233 BP; 74 A; 46 C; 48 G; 64 T; 1 other;
     tgtgcagttt tgtcatcgct agtttctggc gagaaagccg agagattagg aaaaaggaga        60
     acggttcgag ttggtcacac tacgaagaac ttggaatmgg aaaggaagac accgtgaatt       120
     tgatccgcga ataaaccttg aatttgtacc cctaagtgca caatatataa actatatttc       180
     agtatcaacc caatcttctt ttcattgttt gcctcttcag tcaagcacaa aca              233
//
ID   BEL-690_AA-I repbase;    DNA;    INV; 6098 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-690_;
KW   BEL-690_AA-I; BEL-690_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6098
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6098
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 312-312 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..6057
FT                 /product="BEL-690_AA-I_1p"
FT                 /translation="MSDPGMNVASKAKGTSGKLHKTPPSTSSDNKEPPEDP
FT                 SKQTHNKCTKSDIVASSNPNLLNPPNLVHQCKPVARTGCVLCGNPDDDYMA
FT                 QCDTCDEWYHYSCAGVSEDIKNYSWTCLKCVNAKATKGATVRKMTTRAAAA
FT                 KGAKKTISRTTKKKNVEDSIKKDVVEAEGRVKDAKSTVGAKFSKAASVTSG
FT                 ASRKSAKARLDVELQQIEAEEALMREEMQRKRELAKKKFEVLKEMADLEGS
FT                 GESAVDQPNAVHKVEHWLKHHGEDHTKGKRLPNKEASSSDSDDEVVTETSS
FT                 EGTGNELDSEDETSSDSEVRCDRVEERSVGELEARRRYGMKKTTTSKNAKC
FT                 GSSKPSGTERQQSFRSDKRLSKDELAARQVVPRELPKFSGNPEEWPMFLST
FT                 YEDTSTMCGYTDAENMIRLRNCLKGDAFNAVRSFLMRPETVGRAIRALKLR
FT                 FGRPETIIEYLKEKIIAMPVIRPDAMDKLVDFALEVQNLCATIEACGQKQY
FT                 MCDTTLLKEFEKKLPPQIRLDWARYKRKLSKVKLSTFSRWIYNLAEDVNVV
FT                 FEPQNRGSKVQEFRGLRKEKYVNTHAEVAVKDRSQQVCPVQNSLSVTVTSG
FT                 ESKPCPACKGDCKFLGKCKRFLDLSYEARWATVRGFNFCRKCLRQHRGGCN
FT                 SGECGKNGCTFKHHVLLHKDMAAPTASSSGVSNKGGFLKQNEERTVNTHKS
FT                 ATGPGSFRYLPVTLFGDGIQVNCHAFLDDGSELTLIDQQLAEDLKLSGTVL
FT                 PLCLKWTGGTHRYESDSQSINVEISGQDGKRTLLQDVRTVEELQLPFQSLD
FT                 MDHLVEKHKYLHGLPVESYHNVRPRILIGLKHANLMLVRKSREGKMGEPIA
FT                 VKTNLGWTVYGGWTSQTFSSTASHTYHICSCNEKDSVHLNQMVKDYFSIDS
FT                 LVIQSNQIEKLSKDDERAMSLLESQTYFDGERYATGLLWRSDKIRLPDNKA
FT                 VAVRRWRCLEKRMGKDPELSRTLNDKIAEYRSKNYIRKLTSEELSQRRERI
FT                 WYLPIFPVYNPNKPGKVRIVWDAAAEAYGVSLNSALLTGPDQLASLVGILY
FT                 QFREHRIGLCADIREMFHQVRIVPEDQHCQRFLWRDCDEHGEPNTYIMQVM
FT                 TFGASCSPATAQFVKNRNADRFEEESPAAVAIIKRRHYVDDMVFSVETEAE
FT                 AVELAESVRFIHMQGGFEIRNWVSNSPMVLSKMSGEVTSEKDLNITAELAS
FT                 QKILGMWWDTHGDVFKFKIGWTRFDSDLLQGSRCPTKREILRTLMTIYDPL
FT                 GLIDHFLILLKILLQEVWRANVDWDEQIPENLFDKWRDWLRMLTALEKLRI
FT                 PRCYRQVVSSLNTAAVEMHIFVDASESAMAAVVFLRFVEDNQVECSLVAAK
FT                 TRVAPLKYTSIPRLELQAAVLGTRLAKSVYGNLTMTITKRTFWTDSRNVLC
FT                 WLRADHKRYSAFVGSRISEILDSTEAREWRWVPTRSNVADDGTRWQNQPNL
FT                 SAESRWFRGPEFLMQAEENWPSLQQTPFITEEEMRPSVLLHFKVPESPIDV
FT                 GRFSSWRRLLAVTGYVLRFCSNLQRRLRKHPVMIGPLTREELRKAELHHYR
FT                 QAQLDVYQDEVSTLEAKDDAAKQIPKSSSLYKLSPFVDDFGVLRMKGRTTV
FT                 CVYLHSDAKNPVILPPKHPVTSLILTHYHQKYLHRNYEIVVNEVRQKYSIF
FT                 RLRQALALIRRNCQWCKNRDAAPQPPEMADLPAARLAAYTRPFAHVGVDFF
FT                 GPIEVSVGRRVEKRWGVLLTCLTVRAVHIEVAHSLTTSSCIMALRNFTARR
FT                 GTPVSFYSDRGTNFVGANREILETVEKIDQNQLMREFVTSSTAWQFNPPAA
FT                 PHMGGSWERLIQSVKRNLSEILHARRPTDEELRNALTEIEGVLNARPLTHV
FT                 PIDDEAAPALTPNHFLLGSTDGSKPLSLIDADTAALRRGHPTSQWLANLFW
FT                 KRWIRDYLPDITRRTKWHEKAKPLQVGDVVVIVDHEHPRNCWPKGRVIEVS
FT                 TNGGQTRKATVQTANGIYERPTVKLAVLDVQREKK"
XX
SQ   Sequence 6098 BP; 1746 A; 1341 C; 1616 G; 1395 T; 0 other;
     tattaaaatt tcgtttacct cggagcgatg tcagatcccg gtatgaacgt ggcgagcaag        60
     gccaaaggta cctcaggtaa gctgcacaag acacctccta gtacaagttc agacaataaa       120
     gaaccccctg aagatccatc taagcagacc cataataaat gcaccaagag cgacatcgtt       180
     gctagttcaa atcccaatct cttaaatccc cccaatctcg tgcaccaatg caaacctgtg       240
     gctcgaacgg gttgtgtgtt atgcggtaac cctgacgatg attatatggc gcagtgcgat       300
     acttgtgacg agtggtacca ttactcgtgc gcgggtgttt ccgaggacat caagaactat       360
     agttggacct gcttgaagtg cgtgaatgcg aaggcgacca aaggtgcaac tgtacgaaag       420
     atgacgactc gagctgcagc ggcaaaaggt gcaaagaaga cgatttccag gacaacgaag       480
     aaaaagaacg ttgaagattc catcaagaag gatgtcgtgg aggctgaagg gcgcgtaaaa       540
     gatgcaaagt caacggtggg tgcaaagttt agcaaggccg cttccgtaac ctcgggagcg       600
     tcgcgaaagt cggcgaaggc acgattggac gttgagctac agcagattga ggctgaagag       660
     gcattaatgc gtgaagaaat gcaacgaaaa agagaactag ctaagaagaa gtttgaggtt       720
     cttaaagaga tggccgactt ggaaggtagt ggagaatccg ccgtcgatca gccgaatgct       780
     gttcataaag tggaacattg gttgaagcac catggcgaag atcacacaaa aggcaagcga       840
     ttaccgaata aggaagcgag ttcatctgac tccgacgacg aagtagtcac ggaaacgtcg       900
     agcgaaggaa ccggaaacga attagatagc gaagatgaaa catcatccga tagtgaagtt       960
     cgttgcgaca gagtggaaga gcgatccgtc ggagagctgg aagcgcgcag acgttatggg      1020
     atgaagaaga ccacgaccag caaaaatgcg aagtgcggaa gcagcaaacc gtccggtaca      1080
     gagcggcaac agtctttccg gagcgataag agactttcta aggatgaatt agcagcacgt      1140
     caagtcgttc cccgcgagct gccgaaattc agcggtaatc cagaggaatg gcccatgttc      1200
     ctgtcgacgt atgaagacac ctcgactatg tgtgggtaca ccgacgccga aaacatgatt      1260
     cggctgagaa attgtttgaa gggagatgcg ttcaatgctg ttcggagttt cttaatgcgg      1320
     cctgaaaccg taggaagggc aattcgtgct ttgaaactga ggtttggcag accggagacc      1380
     atcatcgagt atttgaagga gaaaatcata gcgatgccag tcattagacc agacgcaatg      1440
     gacaagctgg ttgactttgc cctggaagtg caaaaccttt gtgccaccat agaagcttgt      1500
     ggtcaaaagc agtatatgtg cgatacgaca ctactgaagg agtttgagaa gaagttgccg      1560
     ccacaaatca gacttgactg ggcgcgatac aaaaggaagc tgtctaaagt gaagttgtct      1620
     acctttagtc ggtggatata caatctagca gaggatgtga acgtggtttt cgagccgcaa      1680
     aaccgtggaa gtaaggttca ggaatttcga ggacttcgga aggagaaata tgtgaatacc      1740
     cacgcagaag ttgccgtcaa ggatagaagt cagcaagttt gtccagttca gaacagtctg      1800
     tcggtgactg taacgagtgg agagagcaag ccatgcccgg cctgcaaagg cgattgcaaa      1860
     tttctgggaa aatgcaagcg atttctagat ttgtcgtatg aagcgagatg ggcgacagtt      1920
     cgtggcttca atttctgccg taagtgcctt cggcagcaca gaggtggctg taattcagga      1980
     gaatgcggaa agaacgggtg cacattcaag catcatgtgc tgctccacaa agatatggct      2040
     gcaccaaccg cttccagcag tggcgtgtcc aacaaaggag gatttctgaa gcagaatgag      2100
     gaacgcaccg ttaatactca caaatctgca acgggtccgg gttcgtttcg ctatctgcct      2160
     gtaacgttgt tcggcgatgg aatacaagta aattgtcacg cctttttaga cgacggatca      2220
     gagctaacac tcatcgatca gcagcttgcg gaagacctga agctttctgg aacggttctc      2280
     ccgctttgtt taaagtggac gggagggacc catcgctacg aatctgactc acagagcatc      2340
     aatgttgaaa tatccggaca ggatgggaaa cggactttgc ttcaggatgt aagaacagtt      2400
     gaagagctac aattaccctt ccagtcactg gatatggacc atctggtaga aaagcacaaa      2460
     tatctgcatg gactgcccgt ggaatcgtac cataacgttc gtccacgaat actgattggt      2520
     ttgaagcatg cgaacctcat gctggtgcgc aaaagtcgcg aaggaaagat gggagagccg      2580
     atcgccgtta aaaccaatct cggctggact gtatacggtg gctggacatc acaaaccttt      2640
     tcgagtacag ccagtcacac gtatcacatt tgttcgtgca atgaaaagga ttctgttcat      2700
     ctgaaccaga tggtaaaaga ctacttttcc atcgatagtt tagtgattca gtcaaaccag      2760
     atcgaaaagc tttctaagga tgatgaacga gcaatgtctc tacttgaatc tcaaacgtat      2820
     ttcgacggag agcggtatgc aacaggacta ttgtggcggt ctgataaaat ccgtctaccg      2880
     gacaacaaag cagttgcagt tcgtcgttgg agatgcttgg agaagcgcat ggggaaagat      2940
     cctgagttgt caaggacttt gaacgataag atcgcggaat acaggtcaaa aaactacatc      3000
     cgtaagctga cgtcagagga gttgtcacaa agacgcgaac gaatatggta cctgcctatt      3060
     tttccggtgt acaacccgaa taaaccaggg aaggtcagga ttgtgtggga tgctgctgcc      3120
     gaagcgtatg gtgtatcctt gaactccgca ctactgaccg gtcctgatca gttggcgtca      3180
     ctagtaggta tactgtacca gtttcgtgag catcgaatag gcctgtgtgc cgacatccga      3240
     gagatgtttc accaggtcag gattgttcct gaagaccagc attgtcagcg atttctatgg      3300
     cgcgattgcg atgagcatgg tgagccgaac acttatataa tgcaggtaat gacgttcgga      3360
     gcaagctgtt ctcctgcaac tgctcaattt gtgaagaaca ggaacgccga tagattcgaa      3420
     gaagaatctc cagctgcggt ggcgatcatc aaaaggcgac actatgtcga tgacatggta      3480
     tttagcgttg aaacggaagc agaagcagtc gaactggctg agtcagtgcg ttttatccac      3540
     atgcagggtg gatttgaaat ccgcaattgg gtttctaact ctccaatggt gctttcaaaa      3600
     atgagcggag aagttacgtc agaaaaggac ctgaacatta cagccgagct agctagtcaa      3660
     aaaatcctcg gaatgtggtg ggatacacat ggcgatgttt tcaaattcaa gatcggatgg      3720
     acaagattcg actcagatct gctccaggga agtcgttgcc ctaccaaacg ggaaattctt      3780
     cggacactta tgaccattta tgatcctcta ggcctcatcg atcacttctt gattctgctg      3840
     aaaattttac tgcaagaggt gtggcgcgca aacgttgatt gggacgaaca aattcctgaa      3900
     aacctgttcg acaagtggcg tgactggttg cgaatgctga cagcgttgga gaagctgcgt      3960
     atacctagat gctatcggca agttgtttcg tcgttaaaca ctgccgccgt tgaaatgcac      4020
     atttttgtgg atgcaagcga aagtgccatg gcagcggttg tattcctgcg attcgtagaa      4080
     gataaccagg tggaatgttc tctagttgca gctaagacgc gcgtagcacc gctcaaatac      4140
     acctccattc cacgtctgga gctgcaagct gcagttcttg gcactagact ggcgaaaagc      4200
     gtctacggca accttacaat gacgatcaca aagcggacat tttggacaga ctcacgaaat      4260
     gttctctgtt ggttacgagc tgatcacaaa cgatatagtg ccttcgttgg atccagaata      4320
     agtgaaatcc tagattctac ggaggcccgc gagtggagat gggtcccaac acgttcaaac      4380
     gttgcggatg acgggactag atggcagaat caaccaaact tatcagcgga aagcaggtgg      4440
     tttaggggac cagaattcct gatgcaagca gaagagaatt ggccatcgct tcaacagacc      4500
     ccgttcatca cggaggaaga gatgagacct agtgttctac ttcacttcaa agttcctgaa      4560
     tcaccaatag acgtgggaag attttcctct tggcgacgat tattagcggt aaccggctac      4620
     gtcctgcgtt tttgttcaaa ccttcagcgc cgtctcagga agcatcctgt gatgattgga      4680
     ccgttgacac gtgaagaact tcgaaaagca gaacttcatc attatcggca agcgcaacta      4740
     gatgtttatc aggacgaagt atcaactttg gaggcgaaag atgacgctgc caagcaaatt      4800
     ccaaagtcta gttctctcta caagttgagc ccattcgtcg acgacttcgg tgtattgaga      4860
     atgaagggta gaactacagt atgtgtatac ttgcacagtg acgcaaagaa tcctgtgatt      4920
     ctaccgccaa agcatccagt aacatcgctc atcttaaccc attaccacca gaagtatttg      4980
     caccgtaatt acgaaatcgt agttaacgaa gtccgtcaga aatatagcat cttccgcctg      5040
     aggcaagctc tcgccttgat ccgaagaaac tgccaatggt gcaaaaatcg agacgctgct      5100
     cctcaaccgc cggaaatggc agatctaccg gctgccagat tagccgcgta cactaggcca      5160
     ttcgcacatg taggggtgga tttctttggt ccaattgagg tatctgtggg tcgaagggtt      5220
     gagaaaagat ggggggttct actaacttgt ctgacggtaa gggccgtgca tattgaggtg      5280
     gctcactctt tgacaaccag ttcctgcata atggctttga ggaacttcac tgcacgtaga      5340
     ggtacgcctg tcagcttcta cagtgacaga ggcactaatt ttgttggtgc caaccgagag      5400
     attttggaaa ccgttgagaa gatcgaccag aatcagctta tgcgtgagtt tgtcacttcc      5460
     tctactgctt ggcaattcaa tccaccggct gcgccccaca tgggcggtag ttgggaacgg      5520
     ctcatccagt cggtaaaacg aaacttgtca gaaattctcc atgcacgtcg accaaccgat      5580
     gaagaactgc gaaatgcgct gacggaaata gagggtgtac tgaatgcacg cccattgact      5640
     cacgtgccca ttgatgatga agccgcaccg gccttaaccc caaaccactt ccttttgggt      5700
     tcaacagatg ggtcgaaacc gttgtccctg attgatgcgg atactgcggc cttacgacga      5760
     ggacatccga cttcgcaatg gttagcaaat cttttctgga agcgctggat cagggattat      5820
     cttcccgaca taacacgacg tactaaatgg cacgagaagg ctaaacctct acaagtgggc      5880
     gacgtagtag tcattgtgga ccatgagcac cccagaaatt gttggcctaa gggacgggtt      5940
     attgaagtaa gtaccaatgg aggacaaacg cgtaaggcga ccgttcaaac agccaatgga      6000
     atctacgaga gaccaacagt taaactcgca gtgttggatg ttcagcgcga gaagaagtag      6060
     gctggaccaa aggacttggt ccgcgtaccg ggggggag                              6098
//
ID   BEL-690_AA-LTR repbase;    DNA;    INV; 711 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-690_AA-I;
KW   BEL-690_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-711
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-711
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 279-279 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 711 BP; 238 A; 132 C; 128 G; 213 T; 0 other;
     tgtgacgtcc tcggacgatg cgcacatacc atctcaacac cctgcttcgt tgaacctctt        60
     catggtatac aaacggcatg acgtccaaac gactgacatt gggttcggga gacaatagat       120
     gaaagagact attgaatgct gattcaccac aagtgagctg aagtgctgat gatatctatt       180
     ccaatatttc ctatattata agtgaatttc ctaaattata gtttatccct ttagtattag       240
     ttttttgaac acgccagaaa ttaatcagtg gtaaagcaga tattttgact agataaaatg       300
     tgtagcacaa aattaatcat tgttgtctat cgcataccgc ctttattata caggttataa       360
     aactaattgt cacttagtgt gcttacattt ctataattga ttattctaaa cttaaaggta       420
     agaagttata cctaagcatg caatgaatta gtaaaaccta aatttcctaa atttgttaaa       480
     gctatagacg catgcacatg caacataagc cctactagga ggagaaattc tcaaggaata       540
     cattctaagg tagacgagag agagcaggag gcactaaacg taagtgatat gataactgta       600
     tactatacta tcactaatga attgctcatt aaaggaaatt ttaaccaacc gaaaatccct       660
     gtggtggttc aatttttcgg aaaccgttcc ctccagttgg cgtggccaac a                711
//
ID   BEL-691_AA-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-691_;
KW   BEL-691_AA-I; BEL-691_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5986
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 313-313 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..5984
FT                 /product="BEL-691_AA-I_1p"
FT                 /translation="MPQNKDKSGTDPKASCPLCKEPDTDTMVACDRCNLWY
FT                 HFRCVSVGESVADRDWSCPSCVREIYDISITKIGDDQLSRQSHNVSTTSSV
FT                 RAARAALELQRLEEQKRLDMDRIAAESKRKEQEAALVRTRLEQEKAQREKE
FT                 QALVEQQLEDEKQRAEALKKLEDLYLQRKYEILNAQLEGSVSEKKSISVNG
FT                 AARARQWVDACNLNFVPDDHVPDPDSMKQSERKTGTVPKQHPRKDDIRNLQ
FT                 PLHNSTPLVEELVQPIQRQERLSSLQPVVSTEAPLNLQSSGGAAARFTRFS
FT                 IPNRSQEAANSAQMPSISDNRFRSHQEATMHGGSNTQPQIPILSNAQLAAR
FT                 QVLTKDLPSFTGKPEDWPVFISCFETGTRECGFSNAENLIRLQRSLRGPAL
FT                 EAVKSRLLLPNAVPRVIETLRMLYGRPDVLINTLLCKIRSTPSPKEGRLDS
FT                 LINYCMAVQNYCDHLVAAGQENHLSNPSLLQELVGKLPADIKLKWVDYKDA
FT                 AGAMDLGVFGEFMTDIMRKASEVTVYCPGVCSTGKVEEARSRSSGQTVKGY
FT                 YHHDSEEWDEAKEVQRPNVKVCVICDKAGHHVEQCVKFDKFSADERWKAVR
FT                 LHDLCRSCLKSHSPWPCRRPKECSISGCRVRHHPLLHYPTNTSRFTTTGSQ
FT                 NHHSVSHKAIYRIIPVTVYGASDPIHTYALLDEGSEVTMIEKSLADQLGLR
FT                 GISDPLHLRWTGDITRVESESRVINLRISGRGKAKQYDLVNARTVNKLELP
FT                 IQSIKLHELVDVYPHLHGLPIEDYENARPLLLIGLENLFLAAPLKIREGPR
FT                 GLPIATKTRLGWCIYGGQSSIQIDLARRAFHIKRVDKEHDLHDLVKQYFLA
FT                 DSLGIAPSTVILESDEDKRARSLLSSTTRRIAGGFETGILWKHDEICFPNS
FT                 YPMALSRWKSLERKINKDPILAARVAEQIASYLDKGYARRVKPNELAESNQ
FT                 DKIWFLPLGLVLNPKKPEKLRLIWDAAAEVRGTSFNTMVLKGPDLLTPLAE
FT                 VIYRFRSRRYAIAGDIKEMYHRFKIRPEDQLSQLFLYREKCCEEPTIFVMC
FT                 SATFGSACSPCSAHYIKNLNAKEHQAQYPEAAEAIINGHYVDDFLDSRDTI
FT                 EEIVQLTTDVKFVHQQGGFEIRNFVSNSPEVRARLGESDKTSVKEWKPDNH
FT                 EHTESILGLRWLPYVDQITFSAPMLPASLLDGSIRPTKRQVLRVVMSLYDP
FT                 LGFLAAFVVHGKIIIQTLWRSNCGWDDQIDDSSYKDWKRWIAFLPKLSEVK
FT                 IPRAYFGTTVIAQCQSLQLHAFMDASDTAFACVVYLRYIEDGMPKCTLVGG
FT                 KSKVAPLKTLSIPRLELQAAVMGARLTRSIIQGHRISIPRRFLWTDSTTVL
FT                 HWIHSDTRKYRPFVACRIGEILESTELSEWNYVPSSENVADEATKWGHGPC
FT                 FDPQSRWFQGPMFLRRSEEFWPKQSWKGAEITELTTELRSVHTHRRESSLE
FT                 EIIDVLRFSKWERLLRSLAYVFKFGSRSKNHVESSKLTIDQEFLLKSEKAL
FT                 WKMVQSATYPEEIAMLQSHHYNQKPSGAVSVSSPLYKLSPMVDEDGVIRMD
FT                 GRIGAAPNVPIEAKYPVILAANHPVTILFIDYYHRKFNHQNRELVVNELRQ
FT                 RIYVPGLRNLVKKVSARCQWCKVYTTTPRPPKMGPLPRTRLEAFQRPFTYI
FT                 GLDYCGPMYVKQGRSHVKRWIAVFTCLSTRAIHLEVAYSLTSVSCKMCIRR
FT                 FIARRGAPVEIYSDNGTNFRGVANELQAQLQAIHHDCAESFTNTHSRWKFH
FT                 PPAAPHMGGVWERLVRSIKTALCSFTSVPNLPDDETFETVILEIESMINSR
FT                 PLTYIPLEFPNQEALTPNHFLLGDSNGVRQPPKEPVASGACLRNSWDLARR
FT                 MLDGFWQRWLREYLPTIARRTKWFKDTKPIEIGDLVFLADELKRNSWVRGK
FT                 VVGVTPGRDGISRQARVKTMFGEFRRPTAKLAVIDVMNKVETASGGTLTQS
FT                 HGPG"
XX
SQ   Sequence 5986 BP; 1735 A; 1372 C; 1450 G; 1428 T; 1 other;
     ttctgtaaag attgtaacct tgaacggttc atcgccaagc ttggaggatg cctcaaaaca        60
     aggacaaatc cggaactgat ccaaaagcca gttgtccact gtgcaaagag ccggacactg       120
     atactatggt tgcctgtgac cgktgcaatc tatggtatca ctttcgatgc gtgagcgttg       180
     gagaatccgt tgccgatcgt gactggagct gtcccagttg tgtacgggaa atatacgaca       240
     tttcaataac gaaaatagga gacgatcagt tatctcgtca gtctcataat gtgagtacaa       300
     cgtcgtcagt tcgggccgcc agagcggcat tggagttaca gcgtttggag gaacaaaaac       360
     gtttggacat ggaccgtatt gcagcagaaa gcaaacgtaa ggaacaagaa gcagccctgg       420
     tacgcacacg cttagagcaa gaaaaggccc agcgtgaaaa ggagcaagct ctagtagaac       480
     aacaattaga ggatgagaag caacgcgcgg aagcactcaa aaagctggag gacctgtacc       540
     tgcaaagaaa atatgaaatt ttgaacgccc agttggaagg atccgtcagc gagaagaaat       600
     ccatcagtgt aaacggagct gctcgagctc ggcaatgggt agatgcatgt aacctcaact       660
     ttgtaccgga tgaccacgtc ccggatcccg attcgatgaa acaatccgag cggaagactg       720
     gaactgtccc aaagcagcat ccgaggaaag acgacatacg aaatctacag ccgctacaca       780
     actcaacccc attagtggaa gaactagttc aacccattca acgtcaagaa cgattatcga       840
     gcctacaacc ggtcgtgagt accgaagcac ctttgaacct gcagtcgtct ggtggggcag       900
     ctgctcgttt tacaagattt agcataccca atcgttcaca agaggcagca aacagcgcgc       960
     agatgccgtc aattagcgac aatcgatttc gatcacatca agaagcaacg atgcacggag      1020
     gttcgaacac gcaacctcag atccccatcc tatcgaacgc acaactagct gctcgtcaag      1080
     tgctaacgaa agaccttccc agttttactg gaaagccaga agactggcct gtgttcataa      1140
     gctgctttga gacggggact agagaatgcg ggttttccaa tgcagagaac ttaatccgtt      1200
     tgcagcgtag cttgagaggt cctgcgttag aggcagttaa gagcaggttg ttactgccaa      1260
     atgcagttcc acgggtgata gagacattaa gaatgttgta tggcagaccc gatgtcttga      1320
     tcaataccct tctctgcaag atcagaagta ctccgtcacc gaaggaaggc agacttgatt      1380
     cactcattaa ctactgcatg gccgttcaaa attattgtga tcatctagtg gcagctggac      1440
     aagagaatca cctttctaat ccgtcccttc tacaagagct ggtgggaaaa ttacccgcag      1500
     acatcaaatt gaagtgggtc gactataaag atgcagcagg agcaatggat ctaggtgtat      1560
     tcggggagtt catgaccgac attatgagaa aggcaagtga ggtaacagtg tattgtcccg      1620
     gagtatgttc aacgggcaaa gtggaagaag caagatcgcg tagcagtgga caaaccgtca      1680
     agggctacta ccatcatgac tccgaggaat gggacgaagc taaagaagtt caacgtccaa      1740
     acgtaaaggt ttgcgtaatc tgtgacaagg caggtcatca tgtggaacag tgtgtcaaat      1800
     tcgataaatt ttctgcagat gagagatgga aagctgttag actacacgat ttgtgcagat      1860
     cctgcctgaa aagtcattcc ccgtggccgt gtcgccgtcc taaagaatgt tccatatccg      1920
     gttgcagagt ccgtcaccat cccctattgc actatccaac aaacacctca aggttcacta      1980
     caaccggctc tcaaaatcac cacagcgtaa gtcataaagc gatttataga attattcctg      2040
     tgacggtcta cggagcctcg gacccaatac acacctacgc attgttggac gaaggttcgg      2100
     aagtcacaat gatagaaaag tctttagcag atcaacttgg actgagagga atttccgatc      2160
     cgctgcattt acgatggacc ggagatataa cgcgagtcga aagtgagtcc cgtgtaataa      2220
     atttgcgtat ttccggtaga ggcaaagcga aacaatatga tctagtcaac gccaggactg      2280
     tcaacaagtt ggagctaccg attcagtcca ttaaactgca tgaactcgtc gatgtctatc      2340
     cgcatctcca cggattaccc attgaagact atgaaaacgc tcgaccattg ttgcttatag      2400
     ggctcgaaaa tctgtttttg gctgctcccc tcaaaattcg cgaagggcca cgcggactcc      2460
     ctatagcgac caaaacgaga ctgggctggt gtatttatgg tggtcaatcg tccatccaaa      2520
     tcgacttggc tcgtcgtgcg ttccacataa agcgtgtgga caaagaacac gatctccacg      2580
     atctagtaaa gcagtatttt cttgcggata gtttgggaat cgcgccatcg accgttatat      2640
     tggaatccga cgaagacaag agagcccgat cattgttgtc gtctacaacg cgccgtattg      2700
     caggaggttt tgaaacgggc attttgtgga aacacgatga aatatgtttt cctaacagct      2760
     accctatggc tctaagccgt tggaaaagcc tcgagcgaaa gatcaacaaa gatccgatac      2820
     tggcagctcg ggttgcagaa caaatagcca gttatttaga taagggttat gcaagacgtg      2880
     taaaacctaa tgaattagca gagtccaatc aagacaaaat atggttcctt ccgctggggc      2940
     tcgtattgaa cccgaagaag ccagaaaaac tccggcttat ttgggacgct gccgctgaag      3000
     tccgtggcac atctttcaac acgatggttc ttaagggccc tgatctgcta acaccattag      3060
     cggaagtcat ataccgcttt cgcagtcgca gatacgcaat tgccggagac atcaaagaga      3120
     tgtatcatcg attcaagatt cgccctgaag atcaactgtc ccagcttttt ctttatagag      3180
     agaaatgttg cgaggagcca acaatattcg ttatgtgttc cgccaccttc ggttccgctt      3240
     gttctccatg ttcggcgcac tacatcaaaa atcttaatgc caaggaacat caagcccaat      3300
     atccggaagc agcggaagca attataaatg ggcactatgt tgacgatttt ttagatagcc      3360
     gtgacaccat tgaagaaatc gttcaactga caaccgatgt gaaattcgta catcaacaag      3420
     gagggtttga aatacggaac tttgtctcga attctccgga agtcagagcc cgtttgggag      3480
     agtctgataa gacatctgta aaggaatgga aaccagataa tcacgagcat accgaatcta      3540
     ttttgggatt gcgttggtta ccatacgtag accagattac tttctctgcg ccaatgttgc      3600
     cagcatctct attagacggt agcattcgtc ccaccaaaag acaagtcctt cgcgtggtga      3660
     tgagtttata tgacccactt ggtttcctgg cagcctttgt ggtccacgga aaaataatca      3720
     ttcaaacact ttggcgttcc aactgtggtt gggatgatca gattgacgat agcagttaca      3780
     aggactggaa aagatggata gcctttcttc cgaaactttc cgaggtaaaa attcctagag      3840
     catactttgg aactacggtc atagcacaat gtcaatcttt gcaactacat gctttcatgg      3900
     acgcaagtga cactgcattt gcttgcgttg tatatctgcg atatattgaa gatggaatgc      3960
     cgaaatgcac cttggttggg ggtaaatcaa aggtggcccc cttgaagact ctgtccatcc      4020
     caaggctaga attacaagcc gcagtaatgg gtgcccgttt gacacggtca attattcaag      4080
     gtcatcgaat ttcaataccg cgacgatttc tgtggacgga tagtaccact gtactccatt      4140
     ggatccactc agatactcgc aaatatcgtc cattcgttgc ttgtcggatc ggtgaaatat      4200
     tagaatccac cgaactgagc gagtggaatt atgtcccatc atcggagaat gtagccgacg      4260
     aagccactaa atggggacat gggccctgct tcgacccaca aagcagatgg tttcaaggtc      4320
     ccatgttcct gcgccgatcg gaagagtttt ggccaaaaca atcgtggaaa ggagcagaaa      4380
     taacggaact aacaaccgaa ctacgctcag tgcacacaca tcgacgtgaa agttccttgg      4440
     aagaaattat tgacgtactc cgcttttcaa agtgggaaag attgctacga tcactagcat      4500
     acgtgtttaa atttgggagc cgttcaaaga accatgtaga gtctagtaag ctgacgattg      4560
     atcaagagtt cctgttgaaa tccgaaaagg cattgtggaa aatggttcag tccgcaacgt      4620
     atccagagga gattgccatg ctgcagagtc atcattataa tcaaaagcct tcgggggcgg      4680
     tgtcggtatc gagcccgtta tacaagttgt cgccaatggt tgatgaagat ggtgttattc      4740
     gcatggatgg tcgtatcggc gccgccccca atgtgccgat tgaagctaag tatccagtaa      4800
     tactagctgc gaaccatcca gtaaccattc tctttataga ttactatcat cgcaagttca      4860
     accaccagaa tcgagagtta gtagtcaacg aacttaggca aaggatctac gttccggggc      4920
     tgagaaattt ggtgaaaaag gttagcgcca gatgtcagtg gtgcaaggtg tacaccacga      4980
     ctccaaggcc tccaaagatg ggcccacttc ctcggactag actggaagca tttcaacgtc      5040
     cattcacgta tatcgggctt gattattgtg gtccaatgta cgtcaagcaa ggtcgaagtc      5100
     acgtgaaaag atggatcgca gttttcactt gcctttcaac ccgtgcgatt catttagaag      5160
     tagcctatag cctgacatct gtgtcttgca agatgtgcat ccgacgtttc atcgctagga      5220
     ggggagcacc tgttgagata tactcagaca acggtaccaa cttccgtggt gttgcgaatg      5280
     agttacaggc tcaactccaa gcaatacacc acgactgtgc tgagtccttc actaacaccc      5340
     attcaagatg gaagttccat cctccagccg cacctcacat gggaggggtg tgggaacgat      5400
     tggtacgatc gataaaaacg gcgctttgtt cattcacatc cgtaccgaat ctaccagacg      5460
     acgaaacctt cgagactgta atactggaaa tagagagtat gatcaatagc aggcccttga      5520
     cgtacattcc cctggaattt ccaaaccaag aagcgctcac ccctaatcat tttttactgg      5580
     gtgattccaa cggagttcga cagccaccaa aagaaccagt ggcttctgga gcttgtcttc      5640
     gtaatagctg ggatttggct cgacgtatgc ttgatggatt ctggcaacgg tggttacgag      5700
     aatacttacc aacgattgca cgacgaacga agtggttcaa ggacacgaaa ccaatcgaga      5760
     tcggtgacct tgtgttttta gccgatgagc tcaaacgcaa cagttgggta cgaggtaagg      5820
     tcgttggagt tactcctggt agggatggta tatctagaca agcaagagta aaaacgatgt      5880
     tcggagagtt cagacgacca actgccaagc tcgccgttat cgacgtgatg aacaaagttg      5940
     agactgcatc cggagggacc ctcacccagt ctcacgggcc ggggat                     5986
//
ID   BEL-691_AA-LTR repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-691_AA-I;
KW   BEL-691_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-334
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-334
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 280-280 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 334 BP; 103 A; 67 C; 64 G; 100 T; 0 other;
     tgttgaggcg acagatggcg gaccggtcac ctctcgggac gataacggct cagatcaacc        60
     ctgtgcttga agtagtacaa actgtcatct tcgactagag tgacgtggta gaattagatt       120
     aatcaaccag aattgtgctt tgcgaaatca tttatgaact cttactaaat ttaactacga       180
     attgttaacc tatccaacac tacaatgtaa gtccctttga ttaatgtaaa gaatttgcac       240
     ctaataattg aattatagct ttacagctag tgtaactacg ctaaaagacg tgttgagttt       300
     tttctaacct cctcgtgaag aagtttccac gaca                                   334
//
ID   BEL-692_AA-I repbase;    DNA;    INV; 6064 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-692_;
KW   BEL-692_AA-I; BEL-692_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6064
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6064
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 288-288 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6064 BP; 1789 A; 1386 C; 1401 G; 1486 T; 2 other;
     aattataatt ttcgtttatg cgacaatagc gatgtcaggc cgtggtaaca ccgacgaagc        60
     tggtaagtcg tcaaaaggtg cgaaacaaaa aggttctagt aaaaaacaag tgattgatga       120
     tgatagtgtg gttatggtgg tcacagcggg taaagacaaa cctaaaagtg gaagaggtgc       180
     atcggtcgat gcatgtcaag tgtgtggaga gtctgataaa aaaccaatgg tgcaatgcga       240
     cgactgcgac aagtggtctc acttcacttg tgtagccgtc accgaagaga tcaaggaagt       300
     gagctgggtt tgcctgaaat gccaatctgc taggaaaact cagtcttcaa attcttcaac       360
     tcgacatcaa gatgagcaga aagtgtttga aagcaccgtc caaggtcatg ctacgaattc       420
     taaatccgga gaagctaaaa cgttgaatgt tcctgttgta gtgatccagc ctgcaagcga       480
     tgctcagtcg agacgttccg gtggcagatc ccgatcatcg aagtcatccc agagtgtgtt       540
     gaagctacag ctgatgagac tagaagaaga acgtgcgttc gaagaagcgg caggtgcgaa       600
     gttcagagaa taccttaagg agaagtacag actgctggaa cagatgtcaa accggtcaga       660
     atccagttgc agcgacgccg gtagccgtgt ggaaatgtgg gtgaacaatg tcaacgatgt       720
     cttccaagaa gaacgagatg gtcgaggagt ggctgaagct ttcaatccca aaggtcattc       780
     caccacccat cctccagtga atcatctaaa gaatccttcg tcagatcgca acaaccaggt       840
     atacatgcca aatagcacgc ccctatatgg tgatagaagt cccccagcta tgatcgcgac       900
     gtcgttcagc caaggaacac ggcatgcgtc cacctcaccc tccgtaaact gctataacga       960
     acctgacaga catgaccgtc gtcggaccga tataggtgaa catcacggtg aaccagtgcg      1020
     cgaacatttt atttcaccac gttataatct gctacaacat cagtcatcga tagaagatcc      1080
     ctgttcgctt acaagaagtc aactagcggc aagacaggca gtatctaagg atctaccgac      1140
     gttcgatggc agccctgaag aatggcctat cttcatatca atgttcaaca gctcgaccgc      1200
     tatgtgtgga tattcaaatg aggagaacgt tatacgactg caaagaagtc tcaagggtaa      1260
     ggcttatgag tcagtaaaga gtcgactgat gcatccatct aatgtacctg gtgtgatcaa      1320
     cacacttaaa ttgctctttg gtcagcctga ggcaatagtg cactcattaa tttctaaaat      1380
     caatatgatt ccaccggtga aagaagataa actcgaagct ttagttgatt tggcagtaaa      1440
     tgtacaaaat ttctgcgcta ccgttgatgc atgtgggtta gacgactata tgtataatgt      1500
     ttcgctcctt caccaactga tcagtaaact acctccaacg atccgactgg actgggcccg      1560
     ttaccgtcag actataccga gagccaatat ggcgaccttt ggtaattggc tttactcact      1620
     cgctgaggcc gctagtactc tatcgattcc acctctggtc caggacttca gatcactaac      1680
     agtcgattct cgtccaacga agaaatccaa catgtttctc cacacgcaat cgaccccaag      1740
     tgaagaacca gcagagtgta catcaaccga ttatcgaagc tgcttgtttt gtaagggaag      1800
     ctgcagtacc atagctgttt gtaaaaaatt cctggggcta tcgcgtgact ccaaatggtc      1860
     gatcataagg gagcttagcg tgtgtcgtac atgtcttcga cgtcacgtag gaaagtgtga      1920
     tgcaaaacca tgcggtaaaa atgggtgtcc atactaccac cacgaagttc ttcataacga      1980
     caaaaaactc taccaggcta atcagacaac ttcatcaaca caagccacat ctgtagcacc      2040
     tcaaacaggc catgaacgca cgcaaaattg tattacgcac cagtccgcta ccaacaccgt      2100
     tctttttcga tatctgccgg tagttttgca tggaaaaaat ggattcattc gaacatatgc      2160
     ctttttggat gaaggatcag cgatgacatt attggaccaa gaactagccg atcaactgaa      2220
     ccttaccggt cccatcaacc cactaggcct tcgttggact ggtggtaccg agcgctgtga      2280
     aaaaacctca cgaatggtgg atctgtgcat caaaggaacg tatagcaatg ccaaggagta      2340
     ccaattaaat ggagtgcgca cagtcaagga gttaatgttg ccccatcagt cactcgacat      2400
     ggaccagatg attcaacaat atcctcattg tcgaaatttg cctatagaat cctattccaa      2460
     tgtccgccct cgaattctga taggatcaaa gcatgctcca attggtctcg tactaaaatg      2520
     caaggaagga agtctggaac aacccattgc agtcaagact cgtttaggct ggaccatcta      2580
     tggaggatgt agcgataaca atgagtcaag tattgtgcag tgttcgttcc atatttgcga      2640
     aagtgtttcg cattcggatg aaagtttgca tgaagcggtc aaggcatatt ttgccataga      2700
     cagccttggg atctcaagga gcggtaagga actactctcg accgaaaatc aacgtgcgct      2760
     atctctcctc gaagaacgta ccaagttcgt cggaaatcag tatgaaactg gactgctttg      2820
     gcgctacgac agaacacgtc ttcccgatag caaggaaatg gccctacgaa ggttcttctg      2880
     tctcgagaaa cgaatggaaa aggatttgga gctggcatcc acactgaagc agaaaatgga      2940
     cgaatatttg caaaaaggct atatccggaa acttcaaccc ctcgagctga agcaggacta      3000
     ccagtgtact tggtatttac ccgtttttcc tgtctacaac ccaaataaac caggaaaaat      3060
     ccgtatcgtg tgggacgggg cggcgaagag ctttggagct tctctcaact cggcactcat      3120
     aacaggtccc gatcagctgt gttcgttgtt tgctatattg cttcagttcc gcgaacatgc      3180
     tgttggtgta actggagata taagagagat gtttcaccag gtgctaattc ggaaggagga      3240
     ccaacaaagc cagcggtttt tatggagaga cgagagcaac gaaatccaaa cctatgttat      3300
     gaatgtcatg acatttgggg ctagctgttc gccagcatgt gcgcaatatg ttaaaaacat      3360
     taatgctgat cgatttgctg tggattatcc cgaagcggta gatattatca aacgtaagca      3420
     ctacgtcgat gatgcgatgt tcagcactga aacgccaatt caagctattc ggttagctcg      3480
     ggagattcgt caaatacact acgcaggtgg ctttgagata cgaaattggg tgagcaattc      3540
     agatcaggtg ttgtctgcct tacatgaaga tagcacgaat gaaagaagtt tggacttgtc      3600
     cgtgagcccg atggctaccg agaaggtatt aggaatgtgg tggtgtactg catcggacga      3660
     attcacctac aaaatcaaat ggaaccgtta tgaacctgat ctcctcacgg gcaagctgcg      3720
     tcccacaaaa cgccaaatgc tgcagatcct tatgtccatt tttgatcccc ttgggcttat      3780
     ttcaaacttc ctcatgtatt tgaaagtact cctgcaagat gtttggcgat ccggtatcca      3840
     atgggatgag caagtggatg atacactcta tgaaaagtgg tgcagatggc ttaaggtact      3900
     accaaaggta gaagcggtta agattcctcg atggttccag tcgtcgaccc acaatcgccc      3960
     ctgtacaata caactgcaca cgttcgtgga tgcaagcgag aatggaatgg ctgcattgat      4020
     atttctccga tttgtacata aagatgctgt tgtatgtaca ctcgcagcag caaaaacaag      4080
     agttgctccc ttaaagttcc attcgattcc cagattagaa cttcaggccg cactagttgg      4140
     agttagactt gcgcaatctg tttcggaatc tctttcttat ttgattgatc agcgattctt      4200
     ctggaccgat tctcgcgatg tcctcagctg gataaactcc gaccatcgaa gatacagcac      4260
     cttcgtcgca tttcgggtca gcgagattct tgacatttcg gaatcaaagg attggcgatg      4320
     ggtaccatcg aagcaaaatg tagcagacga tggcactaaa tgggaagctc aacctgattt      4380
     atcttcagaa tcacggtggt tcaccggacc tgctttcttg cgccttggtg aatcagaatg      4440
     gcctaccact cctacaaaaa agtcaaatac gaacaatgaa ctacggcctt gctttcttgc      4500
     tcatcatgag atacgcccaa ctctggtcga tgcatctcgc ttctcaagct ggaagcgact      4560
     caacaacgtg gttggtttgg tttaccgatt tgtaaccaat tgccgtttaa aagcgagtaa      4620
     acagcctaca atctccggac cgctaaccat gagagaactt caacagtcgg agagtcttct      4680
     gttccgacaa gctcaatacg gggagtatag tgacgaaata gtgttactat caaaaaaccg      4740
     cgaccaagct caaacaaacc ctcttccaaa aagcagccga ctgcacaaat tatcaccgtg      4800
     gatggacaac gatggtgttt tgcgtatgcg aagtcgctta tcagcttgtc agtatattac      4860
     cgaagaaaca aaaaaaaccc attatcctgc cgaaagatca ccctgtaacc accttgctaa      4920
     taacccacta tcatagaaag kttaatcacc aaaaccacga agccataata aatgaattac      4980
     gtcagaaatt cgtaataccg cgccttcgca gtcgctacag aaccatacga acgaaatgtc      5040
     aaagatgcat gaatgaaaaa tctgttccac tacctccaat gatggcggat cttccaccgg      5100
     aaaggcttgc agcctattca cgcccattta cacacgtagg aattgatttc tttggtccca      5160
     tggaggtagt tattgggaga agaagagaaa agagatgggg aatgattgct atttgcctaa      5220
     cgacacgagc agtacatgtg gagttggcga actccttgag caccgactca tgtataatcg      5280
     cagtgcgaaa ttttatctca agacgtggaa ctccgagaac cattcgaagt gatcgtggga      5340
     ccaacttcat cggagccagt cgcatacttg acaaattgca acaaatgact tcggacgatc      5400
     aagtattcaa ggaatttgtg agtgcagaga cagattggac tttcaaccct cctttgtcac      5460
     cccacatggg tggcagttgg gaacgtctta ttcgtagttt aaagaggaat ctgatggcaa      5520
     tttgcccgac tagaacacca tcagaagagg ttttacggaa tacgctaacg gaagttgaaa      5580
     ataccttgaa ttcgcgccct ttaactcacg ttccaatcga cgacgacgaa tccccggccc      5640
     tcacacccaa tcactttcta ctggggtctt ctaatggcgt taaacctttg gtaccgttga      5700
     acgatagtgg agcatttctg aaacagaact ggcggatgtc acaggcttta gcaggacaat      5760
     tttggaaacg gtggttatct gaatatcttc cggagataac tcgtcgaacc aaatggtacg      5820
     tggacactaa accgatcagt ttgaatgacg tcgtcatcat tgtagaccct agtttaccac      5880
     gaaactgctg gccaaagggt aggatcattg ctacccacgt cagcaaggat ggccgcatca      5940
     ggtcagctac agtcaagaca gcaaacggak tatacaaaag accggtaact aaattggcgg      6000
     ttctggacgt gcgacgcgat ggagagtaag tcaacttgta ataggttgcc ataccccggg      6060
     ggac                                                                   6064
//
ID   BEL-692_AA-LTR repbase;    DNA;    INV; 818 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-692_AA-I;
KW   BEL-692_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-818
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-818
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 294-294 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 818 BP; 294 A; 154 C; 125 G; 245 T; 0 other;
     tgttgcttac cctattcagg cagcacgcat ctctactgtc cagagcgagc cctctagcaa        60
     attggtcaca ctgagagaac gggagatgac agcgtgagca aactgccaat gcagatgagt       120
     aggtatgaga aaaacatcta cggattgtca ttctactgga taaacgtgtt ctggattcct       180
     caaactattt tctcttaaaa tactacataa aacaattaat aattagttaa tttttgccta       240
     taccgtaagt taaaactata atttattgtg ccatgcaatc atgccttaca tttgatctat       300
     ccttatagtg aattatcgtg aatttgatac cccacttaac ctcctacgta aaaatcccat       360
     tataattagc aatcacgatt ggtaagtgga attaaacaaa tagagtttct tcgtaaagct       420
     aattaactac gtttacagct ctagtttatc gcattgcaac cttaaggaaa tcacaggcat       480
     actaagggaa actaaacgtg agtacaagat gatcataaat ttaatgttaa gtaaactcac       540
     atctataact aaaacatcgc acagaattaa atgcactcaa gaaagagaat tacacaaacc       600
     tacatatata tacaattcaa atctaagagt catgcaaaat atcatgcaaa cttaaatcta       660
     tagtatgaat caaaattgta tatctaatac tagcttattg tgaatgaatt cgcaggaaaa       720
     ttataactct cagtatccca aagactctac gtgtcggatt gagttcataa ttttggaaga       780
     aatccccatt tccgtataat tgttgctgtt tgacaaca                               818
//
ID   BEL-693_AA-I repbase;    DNA;    INV; 6051 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-693_;
KW   BEL-693_AA-I; BEL-693_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6051
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6051
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 314-314 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..6016
FT                 /product="BEL-693_AA-I_1p"
FT                 /translation="MSNRGESENGGKGGKKSKTSKSRSSRGETNEVLGKHG
FT                 PRVVVTTEADSDRSIADKTVPGRSCKSCYGPDSGGMVQCDECSKWHHFTCV
FT                 GVTEEVENQSWSCPKCVSAKWIQREESTSSKNLQPKGATSCTRQEALKSVH
FT                 ADNESISDVASRKCLPKVPSAVKSISSKRSSKTLLKLQMEKLDEERKLERE
FT                 YLDKKYALLQEMASEDGSSYTSSVTSSMNRVRDWVKSNNLKDGPRNSIPFE
FT                 PQRNSTQYQPLLQQPDAALDPVRLSTHMDQLTIGRTFSFKDGSLDHLRPAV
FT                 PVNICQNPDLTHGSTRRPSASAVSYHCRQQSAAIMPDTIADRIVHRQEPSI
FT                 QHRSHHVEDLCPLSNKQIAARQAVSKDLPLFSGKPDEWPIFFSAFTNTTTM
FT                 CGFTDGENTTRLQKCLSGKAYDAVKSLLMHPSNVNRVISTLRMRFGQPEAI
FT                 VHSLIEKINSLPALREDKLETIMDFAVEVQNFCSVVDACGLEEHMYDVSLL
FT                 HQLVSKLPPSIKLDWAKHRLMFSKVNMATFGNWLYSLAEAASSVTIPGVQD
FT                 CRNTRSDTRSARKGTGFLHAHLESESSSHDISEPQRNFRVGCLVCKADCDS
FT                 ITKCKQFLDLSRESKWAVVKEFSLCRRCLRKHSGNCEAKVCGKDGCAFKHH
FT                 QLLHKEQKNKQESTSKTADSPSESSPTPDSERHGCNIHGSSSSSVLFRYLP
FT                 VVIHSEKKSIHTFAFLDDGSELTLLDHELADELGLEGAEIPLNLRWTGGTE
FT                 RCEKDSRITSLSITGDGGGSRTFNLKEVRTVKELQLPYQSLNMAEMRKRYP
FT                 HLRGLPIESYEQVRPKILIGMKHVHVTLVLQCREGKPDQPVATKTRLGWTV
FT                 CGASYENSVPSMVHYSFHVGERTTSDEDLHQAMKEYFSLDSLGVAKQSQSL
FT                 LSSXDQRAYSLLATLTNRKGNRYETGLLWRFDDIRLPNNRPMALHRHHLLV
FT                 KRLQKDPELATTLNQKIADYRQKGYIRKLQKEEESHQVQRSWYLPVFPVVN
FT                 INKPGKTRIVWDAAATSYGVSLNSALLKGPDQLCSLFEILLQFRKYRIGIT
FT                 GDIREMFHQVQIREEDRACQRFFWNNEDGTTAVYEMCVMTFGACCSPSTAQ
FT                 YVKNMNADRFSEQYPQAVEAITKQHYVDDMLTSVESEEDAIQLAQDVKYVH
FT                 SQGGFEIRNWISNSEAVIKALGECEATKKCLDLSAEMSVDKVLGLWWCTES
FT                 DTFTFKVGWNRYDEALLKGQRRPTKREVLRVLMTIFDPLGFIAHFLIYLKV
FT                 LLQEIWRSGVQWDDEINNNLLEKWKTWLRILPAVEQVQIPRCYRSKLTTES
FT                 DVQLHTFVDASETAFAAVSFLRFTSGEQVECLIVASKTRVAPLKFQSIPRL
FT                 ELQAAVLGIRLAQSITEALSIRFKKRYFWSDSRDVICWINSDHRRFSPFVA
FT                 HRVSEILDTTETSEWFWIPTKLNVADDATKWTTQPDLSSSSRWFRGPDFLW
FT                 QSEEEWPAQPLYKSTIEEARSSLVGHLSVPTPPLIFENFSSWTRLTRVVAF
FT                 VYRFINSCRLKKQKLPNHIGALRSEELKAAELCVLRLTQQEAFAEELNALH
FT                 KRNPLPKSSSIVKLSPWLDDQGMLRVLGRTSSCFFISKDAKNPIILPRDHH
FT                 ITTLILSFYHTKYHHYNNETVVNEVRQRFWIPRIRVCYAKMRRNCQRCKNE
FT                 LAKPCPPIMADLPVARLAAFTRPFTHVGIDYFGPLEVAIARRVEKRWGMLA
FT                 TCMTTRAVHIEIVHTLSTNSCVMAIRNMMARRGIPNHIYCDRGTNFVGTNS
FT                 ELTRISEQLSNEAILNEIISPDTKWSFNPPSSPHMGGCWERLIRSVKRNLT
FT                 SLSLPRKPSDEVLRNALTEIENTLNSRPLTHVAVENHADPALTPNHILLGS
FT                 SNGTKPLTMLDDSSXAVRQCWRTSQVIANQFWKRWLTDYLPEITRRTKWHT
FT                 RCELPVKVGDIVIIVDPKLPRNCWPKGKIIETRLSKDGEVRSATVRTASGI
FT                 YERPVVKLAVLDVMRDEQ"
XX
SQ   Sequence 6051 BP; 1780 A; 1400 C; 1421 G; 1447 T; 3 other;
     tcttataatt ctcgtttatc gaaattcaac ctcagttatg tcgaatcgtg gtgagtcgga        60
     aaacggtgga aaaggtggaa agaagagcaa gacatcaaaa tccagatcta gtcgtggtga       120
     aacaaatgag gtcctgggaa aacatggtcc cagagtggtg gtcacgaccg aagcagattc       180
     agatcggtcg atagcagaca agactgtacc tggacgttca tgcaaatcct gctatggtcc       240
     agattccgga ggaatggtgc aatgtgatga gtgcagcaag tggcaccatt tcacctgtgt       300
     tggagtaact gaggaggtgg agaaccaaag ctggagttgc ccaaaatgcg tgtcagcgaa       360
     atggatacag cgagaagaat ctacctcaag taagaatctc caaccaaaag gtgcaaccag       420
     ttgtacacgt caggaggcac tcaagtcagt gcatgcagac aacgaatcaa tcagcgacgt       480
     agcatcaagg aagtgtctac ccaaggtacc tagcgccgtg aagtcaattt catctaagag       540
     gtcatcaaaa acgctcctga aactgcagat ggaaaaacta gacgaagaac gtaaactcga       600
     acgtgaatat ctcgacaaga agtacgccct tctacaagag atggctagcg aggatggttc       660
     atcgtataca tcgagcgtta catctagcat gaatcgagta cgcgactggg tgaaaagcaa       720
     taatctgaag gatggccctc ggaattcaat ccccttcgaa ccacagcgaa attcgactca       780
     ataccaaccg ttattacaac agcccgatgc tgcccttgac cctgttcgtt tatcgacaca       840
     catggaccag cttaccatcg gtcgtacctt ctcattcaag gatgggagct tagaccacct       900
     gcgtccggcg gtaccggtca acatttgtca gaatccagat ttgacacacg gttcaactag       960
     gcgcccatca gcgtcggccg tttcttatca ttgtcggcag cagtcagctg ctataatgcc      1020
     tgatacaatc gcagaccgca ttgtccatcg gcaagaacct agcatacaac accgctctca      1080
     tcacgtggag gatctctgtc cgctttcaaa taaacagatt gcggcacgtc aggctgtatc      1140
     gaaagatttg ccgttattct cagggaaacc cgacgagtgg cctatcttct tttcggcgtt      1200
     cacgaacact acaacgatgt gtggattcac agatggagag aacacaacta gattgcaaaa      1260
     atgcctcagt gggaaagcgt acgatgcagt gaaaagtcta ttgatgcatc catcgaacgt      1320
     gaacagagta atctccacac ttcggatgcg gtttggacaa cctgaagcta tcgtccactc      1380
     cctgatagag aaaataaact cattgccagc cctccgagag gacaaattgg aaacgatcat      1440
     ggacttcgct gtagaagtcc aaaatttctg ttccgtcgtt gatgcttgtg gcttggaaga      1500
     gcacatgtat gacgtgtcat tgctacatca gctagtcagc aagctgccac cgtcaattaa      1560
     actcgattgg gccaaacatc gcctaatgtt ttcaaaggtc aacatggcga ccttcgggaa      1620
     ttggctctac tccttggctg aggcagctag ttccgtgaca attccaggag ttcaagattg      1680
     taggaatact cggagcgaca cacgttcggc tcggaaagga acaggtttcc ttcacgcaca      1740
     tctggagtcg gaatcatcgt cccacgatat aagcgaacct cagagaaact tcagagttgg      1800
     atgcttggtg tgcaaagctg actgtgacag tattaccaaa tgcaagcagt tcttggatct      1860
     ttcccgtgaa tcgaaatggg ctgtagtgaa agagttcagc ttatgtcgta gatgtctacg      1920
     caaacatagc ggcaactgcg aagcaaaagt ctgtgggaaa gacgggtgcg cattcaagca      1980
     ccaccaactg cttcataagg aacagaaaaa taagcaagaa tctactagca aaacagctga      2040
     ctccccatcc gaatcaagtc cgactcctga ctctgaacgt catggttgta atatccatgg      2100
     ttcaagctct agttctgtat tgtttcgcta cctcccagtg gttatccaca gtgagaagaa      2160
     atcaatccac acgtttgcat ttttagatga tggttcggaa ttaacgctct tggaccatga      2220
     gttagctgat gagcttggac tagagggggc cgaaatccca ctgaatctgc gstggactgg      2280
     tggtactgaa cgctgcgaga aggactcccg cattacaagt ctctcaataa ccggcgacgg      2340
     aggtggatcg agaactttca acttgaagga agtaagaacg gtgaaggagc ttcaactacc      2400
     ttatcaatcg ttgaacatgg ctgaaatgag aaaacggtat ccacacctgc gtggtttacc      2460
     tattgaatca tacgagcaag tacgtcctaa aattcttatt ggaatgaagc acgttcatgt      2520
     caccctagta ctacagtgtc gcgaagggaa accagatcag cctgtagcta ctaagacaag      2580
     gctaggttgg actgtgtgtg gtgcaagcta tgaaaacagc gtacccagca tggtacatta      2640
     ctcctttcat gtaggagagc gtacgacctc tgacgaggat ctacatcaag caatgaagga      2700
     gtacttttcg cttgatagct tgggcgttgc taaacaaagc caatcgcttc tctcctccgm      2760
     agatcaaaga gcatattcgt tactggctac gctcaccaat cgcaagggca acagatacga      2820
     aactggtttg ctatggcgct ttgacgatat ccgtctacca aacaatcgac caatggctct      2880
     acaccgacac cacctcctag tgaaacgctt gcagaaagat cctgaattag caactactct      2940
     caatcagaag atcgccgact atcgtcaaaa aggctacatt cgaaagctgc agaaagagga      3000
     agaaagtcat caagtacagc gctcatggta cctaccagtt ttcccagtag tcaatatcaa      3060
     caagcctgga aagacacgaa ttgtgtggga tgcagcggcc acctcctacg gagtctctct      3120
     gaattctgcc cttcttaaag gtcctgacca actatgttca ctgtttgaga tcctacttca      3180
     gttcaggaaa taccggattg gaatcactgg cgacatccgc gaaatgttcc atcaagtgca      3240
     gatacgagaa gaagatcgag cttgccaacg cttcttctgg aacaacgagg atggaactac      3300
     cgccgtatat gaaatgtgtg tgatgacctt tggtgcgtgt tgctcgccaa gtactgctca      3360
     gtatgttaaa aatatgaacg ccgacagatt ttcagagcaa tatccacaag cggtagaggc      3420
     cattacgaag caacactacg tggatgatat gttaactagc gtggaatcag aggaagatgc      3480
     tattcagctg gcacaagatg ttaaatatgt gcactcacag ggcggatttg aaatccgcaa      3540
     ctggatatcc aattctgaag cagtgataaa ggcgttaggt gaatgcgaag cgacaaagaa      3600
     gtgtttggat ctatcagctg aaatgtctgt ggacaaggtg ttggggttat ggtggtgtac      3660
     tgagtccgat actttcacct tcaaggtcgg gtggaaccgg tacgacgaag cgcttttgaa      3720
     agggcaacgg cgacccacaa aacgtgaggt attgcgggtg ttaatgacca tcttcgaccc      3780
     cttgggtttt atagcacatt ttctcatata tttaaaagtg ctcctgcaag aaatttggcg      3840
     ttctggtgtg caatgggacg acgaaatcaa caataacttg ctagaaaaat ggaaaacgtg      3900
     gcttcgaata ttaccagcag tagaacaagt tcagattcca cgttgttacc gtagtaagtt      3960
     gactactgaa agtgatgtgc agctccatac atttgtcgac gctagcgaaa ctgcgttcgc      4020
     tgctgtgtcg ttcctccgct ttacatctgg agaacaagtg gaatgcctca tcgttgcctc      4080
     taagacccgg gttgctccat tgaagtttca atcaataccg agactcgaac tacaagccgc      4140
     tgtactagga atcagattgg cacaaagtat tactgaggcc ttgtccatcc gattcaaaaa      4200
     acgctacttt tggtccgact cacgcgacgt catttgttgg ataaactcag atcatcgacg      4260
     cttttcacca tttgtagccc atcgggttag tgaaattcta gatactacgg aaacaagtga      4320
     gtggttctgg attccaacaa aactgaatgt agcagatgat gctacgaaat ggacaacgca      4380
     accagacttg tcaagcagca gtcgatggtt cagaggacct gactttttat ggcaaagcga      4440
     agaagaatgg ccggcacagc cattatacaa gtcaaccatt gaagaagccc gttcatcgtt      4500
     agtcgggcat ctgtctgtac caacccctcc attaattttc gaaaactttt cctcgtggac      4560
     acgattgact cgtgtggtgg cattcgtgta ccgcttcatc aatagctgtc gtctaaagaa      4620
     gcagaaacta ccaaaccaca taggagcact ccgttctgaa gaattaaaag cagctgaact      4680
     gtgtgtactg cgtctaacgc aacaagaagc cttcgccgaa gagttaaatg cgctgcataa      4740
     acgaaatccg ttgccgaaaa gcagttcaat agtgaaactc agtccttggt tagatgacca      4800
     aggcatgctt cgagtgttag gtcgaacgtc cagctgtttc tttatatcga aggatgctaa      4860
     aaaccctata atcttgcctc gtgaccacca tataaccacg ttgatactct ctttctacca      4920
     tacaaaatat caccattaca acaatgagac cgttgttaac gaagtacgcc aaaggttttg      4980
     gataccgcgc attcgagtct gttacgctaa aatgcgtcga aattgtcaac gatgtaagaa      5040
     cgaactagcg aaaccctgcc caccaataat ggcggacctt ccagtcgcaa ggttggcagc      5100
     atttactcga ccatttaccc acgtaggaat agattacttc ggcccactag aagtagctat      5160
     tgccagaagg gttgagaaac gctggggtat gctggccacg tgcatgacta cacgcgccgt      5220
     gcacattgaa atagtgcaca ctctcagcac aaactcatgt gtaatggcca tccgcaatat      5280
     gatggcgcgt cgtggcatac ctaatcatat atattgcgac cgagggacaa attttgtggg      5340
     gacaaacagc gagttaaccc gtatatcgga gcaattaagt aatgaagcca tcttgaacga      5400
     gattattagc ccggatacaa aatggtcatt caacccacca tcatcaccac acatgggagg      5460
     ttgctgggaa cggctgatcc gcagtgtcaa gagaaatctc acatctttaa gtttacctcg      5520
     taaaccatct gatgaagtgc tgcgaaacgc cttaaccgaa atcgaaaata ctttgaattc      5580
     aagacctctg actcatgttg cagttgaaaa ccacgctgac ccagccttaa ctccaaatca      5640
     cattctactc ggaagttcta atggaacaaa accactcacc atgctagatg atagcagcgw      5700
     ggctgtacgt caatgctggc gtacatccca ggtcatagcc aaccaatttt ggaagcgatg      5760
     gttaacggat tatcttccag aaataacaag aaggactaaa tggcatacgc gatgcgagct      5820
     tcctgttaaa gttggtgaca tagtcatcat tgtcgatccc aagttaccac gaaactgttg      5880
     gccaaaaggc aagatcatcg agactcgact cagcaaggat ggggaagtta gatcagcaac      5940
     agttcggact gctagtggta tttatgaacg cccagtggtc aagctggcgg ttctagatgt      6000
     catgcgcgat gaacagtaag tcctccaagt ggatgacgta cctgggggga g               6051
//
ID   BEL-693_AA-LTR repbase;    DNA;    INV; 735 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-693_AA-I;
KW   BEL-693_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-735
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-735
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 281-281 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 735 BP; 263 A; 147 C; 117 G; 208 T; 0 other;
     tgttggcaac cttgctgcca gcgcgcatct ttcatcaacc ttgcgccact tctacagaga        60
     cagatacgac cagacacagg tgacgaactg acagttctga tgacaggtat gaatgttgaa       120
     cagtaagacg aagaacagat cgacaactaa aaaaagacga taaacatatt tacgaagtgc       180
     acgctgttag acagctcaaa ttacatatag attagatgaa actatcaata ttgcttaaaa       240
     ttagattaac ttcttagtaa ggtatggtat accaatcaaa ctatatttca acttaaaatt       300
     aatgaatttt cacttgaaat aggtacttgc tgtaaagctg tatcgctagt tctattctta       360
     accttaaatt catgccctaa aattgtaaaa tcacggtaag cagaaattga attccttcta       420
     aatcaaaatc taaaacttat cataaaatta ttagaattcg accaacgaca acactgaaca       480
     cagacgaagc tacgtaaggg actaaacgta agtcttaaac tatatactat ttacatatgt       540
     acaggcaacg atttacatga aatttgtaca attctaaatc tgtgcgcaac gcccaaacta       600
     aaaccatgta cttgaaacct ttttcaatag gagaattata atcgtccgct gaattacgcc       660
     cagttctcgt gtttaacttg cggagattat aatcgcggaa attatccctc tcgttccgtt       720
     ggcttaacgc caaca                                                        735
//
ID   BEL-694_AA-I repbase;    DNA;    INV; 5957 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-694_;
KW   BEL-694_AA-I; BEL-694_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5957
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5957
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 315-315 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..5937
FT                 /product="BEL-694_AA-I_1p"
FT                 /translation="MLYRSTEMVKDRREIPTQNCQSCSRPDAAECEMVECD
FT                 ICKKWEHFGCAGVDQRIKQPDRRYKCKSCYAKQGAVSKPLPPFDDRPARST
FT                 RASTKKSQVASVTSSVRAAMMEAQLKIAEEELRHREQELVELAELKQRELE
FT                 ESERQLREKKQLAEEEKSLRERKLQEDKELKAMQSKLRKESLEKRHEIIRQ
FT                 AALSSKGGSRDGSLADSKQKVSAWLEQQAEGYNAEIMNNAHSHTNEGLENS
FT                 MQQARDENPLIQLHSHEKQQVAQVNVDNFPRIIHSTPQHVDRFGRELLSPE
FT                 SDHQINTDRFTQLQIAEGNNRTNSTPIALTQQHIAARQVLGKELPIFSGNP
FT                 EDWPIFISSFDQSTIACGYSDAENLIRLQRCLRGRALETVKSRLLLPSGVR
FT                 QVIQTLRTLYGRPELLIRSLIDKVYHVPAPKHDRLDTLIDFGISVQNLVDH
FT                 LIAANQKDHLSNPVLIRELVEKLPGSMRLDWVEYKNRFPTANLKTFGDFMS
FT                 RLVTAASEVTFDLPGSSSAYRMDKRKSKEAGSLHAHTPYVSEVSSSPSASY
FT                 VASSNKLAKPCASCGRDGHRVMDCAQFKSASVDERWQLVQHKGLCRTCLNN
FT                 HGKWPCRSWKGCEFEGCRQNHHTLLHTASCLGSVNITASHLSLGEFSWPLF
FT                 RMLPVVLFGKHGPLVVFAFIDEGSSYTLLEDAIADELGVSGPTNPLTLQWT
FT                 GNVKRIEQKSKEIQIDIAGKGHSTVHKLVHARTVSRLVLPPQTLNYQELAQ
FT                 QFPHLRGLPIEGYEVVQPKLLLGLDNLRLCVPLKVREGGPKDPIGAKCRLG
FT                 WSIYGYIPNQPIREAVLNFHVAAPTDCDLEMNEQLRDYFALENVGVNAAYE
FT                 RLESKDDQRANLILRETTRRTDDGTRYETGLLWKHDNPDFPDSYPMAVRRL
FT                 EHLERRFEREPELAERVREQIADYERKGYAHKATLLELTSVDKSRVWYLPL
FT                 GIVTNPKKPQKIRLIWDAAAKVDGCSFNEKLLKGPDLLTPLPKVLCQFRQF
FT                 PVAISGDLMEMFHQIRIRSPDCQSQRFVFREQPSNYPCVYIMDVATFGSTC
FT                 SPASAQYVKNKNALEFAEKFPRATDAIVQKHYVDDYLDSFRTVEEAIDVVN
FT                 EVKLVHSKGGFTLRHFFSNVPEVLHGIGEVTKEESKNLLLERGENSESVLG
FT                 MKWLPTEDVFSYSFNMRHDLRTIIENNRIPTKREVVKVVMTLFDPLGLISF
FT                 FLVHGKILIQDIWARGTDWDEAIPSDLYARWLQWTSLFPALEQLRIPRCYF
FT                 KSARWDKLDNLQIHVFCDASEAAYSCVAYLRLEEENNMQVALIGSKTKVAP
FT                 LKTLSIPRLELNAAVLGARLLETFQNYHRLPISRRVLWSDSRTVLAWIGSD
FT                 HRRYQKYVAFRIGEILTITDQTEWKWVPTKLNISDQATKWNNGPILSMDNP
FT                 WFQGPSFLRESETFWPEQRPVTPTNEELPTSTIHSCHLISKVHMPIDVSRF
FT                 SSWNKLQRTVVFVFRFLDNCRRKKNRECLQLGVISQAELKQAEELLWKIAQ
FT                 QEMYNEEISILAASQGPPENRHRIVHKSSPIYKTWPFLDDRGILRMRGRIG
FT                 ATPFAPPEAKFPAILPGKHTITLLIVDWFHRRFKHANQETIVNEIRQQYEI
FT                 PKLRSLVKKVARNCVWCRVMKAAPRPPAMAPLPEMRLTPFVRPFTFVGLDY
FT                 FGPVSVRVGRSLAKRWIALFTCLTIRAVHMEVVHSLSTESCIMAIRRFISR
FT                 RGPPKEFYTDNGTCFQGASRELKEEIENRNETLASTFTSTNTSWKFIPPSA
FT                 PHMGGVWERLVRSVKVATGAVLDAARKPDDETLETVLLEAEAMINCRPLTF
FT                 VPLESEDQEALTPNHFLLGSSSGVKILPTASVDNRATLRSSWKLAQFISEE
FT                 FWRRWVKEYLPVINRRCKWFVETRDLEVGDLVMVVNGASRGQWLRGRVQQV
FT                 FAGKDGRVRQALVRTSTGVLRRPAVKLAVLDILDKGKPNPTESQAPQA"
XX
SQ   Sequence 5957 BP; 1708 A; 1346 C; 1447 G; 1455 T; 1 other;
     aaacttcaag aaatttgccg aatgttgtac cggagtaccg aaatggtgaa agaccgtcga        60
     gaaataccta cgcaaaactg ccaatcttgt agccggccag atgcagccga gtgcgagatg       120
     gtcgaatgcg acatctgtaa gaaatgggag cactttggct gtgcgggtgt cgatcagagg       180
     atcaagcagc cagatcgtcg ttacaagtgc aaatcctgtt acgccaagca aggagcagtg       240
     agtaagcctc tcccgccgtt tgacgatcgt ccggccagga gcacgagagc aagtacgaag       300
     aagagtcagg tggccagtgt tacgtctagt gtacgagcag caatgatgga agcccaactg       360
     aagattgctg aggaggaact tcgtcaccgt gaacaagagc tggtagagct agcagagttg       420
     aaacaaagag aactcgagga atcggaacgt caactgaggg agaagaaaca gctagcagaa       480
     gaagaaaaaa gtcttcggga acgcaaactg caagaggata aggaattgaa ggccatgcag       540
     tcgaagctgc gcaaagaatc actggagaag cggcatgaga taataaggca agctgctctt       600
     agcagtaaag ggggatcccg agacggttcc ttggcggatt cgaaacaaaa ggtttctgca       660
     tggttggaac aacaggcaga aggatacaac gccgaaatta tgaataatgc tcattcgcat       720
     accaatgaag gtctcgaaaa ctcgatgcag caagctagag atgaaaatcc cttgattcag       780
     ttgcattcgc acgaaaagca gcaggttgcg caagttaatg tagataattt tccgcgaatc       840
     attcattcaa caccacaaca cgttgatcga ttcggtcgtg aacttttaag cccagaatct       900
     gatcaccaaa taaacacaga ccgtttcact caacttcaga tcgctgaggg caataataga       960
     acgaattcta ccccgattgc gcttactcaa cagcacattg ctgcacggca agtattaggg      1020
     aaagagcttc cgatattcag tggaaatcct gaagattggc caatcttcat cagcagcttt      1080
     gatcagtcga caattgcatg tgggtattca gatgcagaga atcttattcg tctgcagaga      1140
     tgcttacgtg gtcgtgcatt agaaacagtt aaaagcaggt tgcttctacc atcaggagtg      1200
     cggcaagtaa ttcaaacatt gcgcacactt tacggacgac ctgagcttct tatccgttct      1260
     ttgatcgaca aagtgtatca cgtgcctgcc ccaaaacacg accggctcga taccctaata      1320
     gacttcggga tttcggtgca gaatcttgtt gaccatttaa tcgcggctaa tcagaaggac      1380
     cacctttcaa atcctgtttt aatacgtgaa ctggtggaaa aactcccagg atcaatgcgt      1440
     ctggactggg tggaatacaa aaatagattt ccaaccgcca atctaaaaac ttttggcgat      1500
     tttatgtcga gattggtgac tgcagcgagt gaagttacct ttgatttacc tggttccagc      1560
     agcgcctaca gaatggacaa acgaaagtca aaggaggcgg gatcgctaca cgcacataca      1620
     ccatatgttt ccgaagtatc cagttcacct tcggcaagct atgtcgcttc ttcaaacaag      1680
     ctagcaaaac cttgcgcatc atgtggacgc gatggtcatc gagtgatgga ctgcgcacag      1740
     ttcaaatctg ctagtgttga tgaacggtgg cagctcgtgc aacataaggg gctttgtaga      1800
     acgtgtctca acaatcatgg gaagtggcct tgcagatctt ggaaaggctg tgaattcgaa      1860
     ggttgtcgtc aaaaccacca cacacttctc cacactgcgt cttgccttgg aagtgtgaat      1920
     atcactgcaa gtcacttgtc gcttggggaa ttttcatggc cgttatttcg aatgttaccc      1980
     gttgttctct tcggaaagca tggtccgcta gtagtgtttg ctttcatcga cgaaggctct      2040
     tcgtacacgc tcttagaaga tgccattgct gacgagttag gtgtttctgg cccaacgaat      2100
     ccactcactc ttcaatggac cgggaatgtc aagcgtatcg aacaaaaatc aaaagaaatc      2160
     cagatcgata ttgctggaaa aggtcactca accgtacata agctagtcca tgctaggact      2220
     gtcagtagat tggtgttacc accacagaca ttgaattatc aggaacttgc tcagcaattt      2280
     ccacatctgc gcggtctgcc aatagaagga tacgaagttg ttcaaccgaa gctattgtta      2340
     ggactcgaca atctgcggct ctgtgtgcct ctcaaagtcc gggagggggg tccaaaagac      2400
     cctattggag cgaagtgccg tcttggttgg agtatttatg gttatattcc caatcaacca      2460
     attcgagaag cggttctgaa ctttcatgtt gcggcgccaa cagattgcga cctggagatg      2520
     aacgagcagc tacgcgatta cttcgcgttg gagaacgttg gtgtaaatgc agcgtatgaa      2580
     aggctagagt ccaaggatga ccaacgggca aacttaattc tacgggaaac cacaagacga      2640
     acagatgatg gaacacgcta cgagactggg ctgttatgga agcacgataa tcctgacttt      2700
     ccagacagct acccgatggc agtccgccgt ctggaacacc tcgagcgaag gtttgaaagg      2760
     gaaccggagt tagcagaacg agttcgtgaa cagatagctg attatgagcg caagggctac      2820
     gcgcataagg ctacactctt ggagttgaca tctgtggaca aaagtcgtgt ttggtattta      2880
     cccctgggca tcgtaactaa tcccaagaaa ccccagaaaa ttcgactgat ttgggatgca      2940
     gcggccaaag tcgacggatg ttccttcaac gaaaaacttc tcaagggtcc agacctgttg      3000
     acgccactcc caaaggtttt atgccaattt cgtcaattcc cagtcgctat ctccggagac      3060
     ctgatggaga tgtttcatca aatacgmatt cggtccccgg actgccagtc ccaaagattt      3120
     gtcttcagag aacaaccatc caattatccg tgcgtctata tcatggacgt ggccactttt      3180
     ggatcaactt gttccccagc atcggcgcaa tacgttaaga acaaaaacgc actggagttt      3240
     gccgagaagt ttccacgggc cactgatgct atcgtccaaa agcattatgt ggatgattat      3300
     ttagacagtt tccgaactgt tgaagaagca atagatgtag tgaatgaagt aaaattggtt      3360
     cactctaagg gaggctttac ccttcggcat tttttctcaa atgtgccgga agttctacat      3420
     ggaattggcg aagtaacaaa ggaggaatct aaaaaccttc tgcttgaacg aggagagaac      3480
     tccgaatccg tgctcggaat gaaatggtta ccaacagaag atgtattctc gtattctttc      3540
     aatatgagac atgatttgcg aacaataata gaaaataatc gcattccaac aaagcgtgag      3600
     gttgtaaaag tcgtaatgac tttatttgat ccgttgggcc tcatttcgtt tttcttagta      3660
     cacgggaaaa tcctaattca ggacatctgg gccaggggta cagattggga tgaagccatt      3720
     cccagcgatc tttacgcacg ttggttacag tggacaagtt tgtttccagc attggaacag      3780
     ttgcgtatcc caagatgcta tttcaagtct gctcgttggg ataaactaga caatctgcaa      3840
     attcacgttt tttgtgatgc aagtgaggct gcatactcct gtgtagcata tctgcggcta      3900
     gaagaagaaa acaacatgca agtagcgctc atcggatcga aaacaaaagt tgccccgttg      3960
     aagaccttgt cgattccacg cctggaattg aatgcagctg tccttggtgc tcgcttattg      4020
     gaaacattcc aaaactatca cagactacca atttcccgaa gggtcctctg gagcgattcc      4080
     aggactgttc tagcgtggat tggatccgat caccgtcgat atcagaaata tgtcgccttc      4140
     agaattgggg aaatactaac gatcaccgat caaactgaat ggaaatgggt ccccacaaaa      4200
     ctcaacatct ccgatcaagc cacgaagtgg aacaatgggc ccatactctc tatggataat      4260
     ccttggtttc agggaccaag ttttttacgc gaatcagaaa cattttggcc cgaacaacgt      4320
     ccagtcactc caacgaacga ggaacttcca acatcaacca tacattcgtg ccatttgatc      4380
     tcgaaagttc atatgccaat tgatgtttcc cgattcagtt cgtggaacaa gcttcaacgg      4440
     acagtggtct ttgtatttcg cttcctagat aattgtcgcc gaaagaagaa tcgggagtgt      4500
     ctacaactgg gtgttattag ccaagctgag ttgaaacaag ccgaagaact cctttggaaa      4560
     atcgcgcagc aagagatgta caacgaagaa atatccatcc ttgctgcttc tcaaggacca      4620
     ccagagaacc gtcatcgtat agtccataaa tctagcccta tatacaaaac ttggccattc      4680
     ttggatgacc gtggaattct tagaatgcgt ggaagaatag gtgctactcc ttttgcacca      4740
     cctgaagcga agtttcctgc aattttacct ggaaagcaca caattacatt gctcatcgtt      4800
     gattggtttc accgtcgctt caaacacgcc aatcaagaga ccattgtgaa cgaaattcgt      4860
     cagcaatacg agattcctaa actgaggtcc ctagtaaaaa aggtagcaag aaactgcgtc      4920
     tggtgccgtg ttatgaaggc tgctccgaga cctccagcaa tggctccttt gcctgagatg      4980
     cgtctaactc catttgttcg accattcacg tttgtcggac tagattactt tggtccagtt      5040
     tctgtcaggg ttggaagaag tctggcaaaa cgctggattg ccttatttac ctgccttacc      5100
     attagggcag tgcacatgga agtggtccac tcactaagca cggagtcctg cattatggct      5160
     atacgccgtt ttatatcgcg ccgcggtcct cctaaagaat tctataccga taacggcaca      5220
     tgttttcagg gtgcaagtcg agagctcaag gaagaaatag aaaatagaaa cgaaactctt      5280
     gcttcaacct tcacgagtac taacactagc tggaaattca ttccaccttc ggctccacat      5340
     atgggaggag tctgggagcg actcgttcgc tcggtcaagg ttgccaccgg agctgttctg      5400
     gacgctgctc gcaagccaga cgatgaaaca ctggagaccg tattactgga agccgaagca      5460
     atgatcaatt gtcgaccact tacattcgta ccattagagt ctgaggacca agaagcgtta      5520
     actcccaatc acttcttgtt gggcagctcc agcggagtga agatactgcc aacggcctct      5580
     gtagataatc gtgctaccct cagaagtagc tggaagttgg cacagtttat aagtgaagag      5640
     ttttggagac gttgggtgaa ggaatacctg cccgtaatta accgtcgatg caagtggttc      5700
     gtagaaacca gagatcttga agtcggcgac ctggtgatgg tagtgaatgg agcttcaaga      5760
     ggtcaatggt taagaggacg agtacaacag gtgttcgcgg gtaaggacgg cagagttcgt      5820
     caagcgctag tacggacctc aacgggagtc ctgcgacgac cagctgtaaa gcttgctgtg      5880
     ctggatattc tggacaaagg taaacctaat cctacggagt cccaagctcc tcaagcctag      5940
     gtttacgggc gggggta                                                     5957
//
ID   BEL-694_AA-LTR repbase;    DNA;    INV; 508 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-694_AA-I;
KW   BEL-694_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-508
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-508
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 282-282 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 508 BP; 176 A; 95 C; 83 G; 154 T; 0 other;
     tgttacgata gacccctcgt tgcggtagtg ttatccgtac aaaacgctgt caatgtcaaa        60
     tgacctcaga cgagctatcc gatatgcaat cggaaacatc aacaaatatc attggacaaa       120
     agaaagatga ttatgcgaaa ttgaagccca gttctgttga cacagcgttt atattattcc       180
     taaatctaat ccgttaaaat caagtaaaac atagtcgtga atacttctat tagactgaat       240
     gtaagctata actcttgttt ctaaagttaa ggtaattaac gataatgtca tctatatatt       300
     tagcttgaaa tcaacgacat aaatccgacg actcaccatt cttcattcat atagtcgatt       360
     caccaaattt gtaagtagct ttaattatga aaatgaattc tagttaaatt gaaataaaca       420
     ttgaaatgaa ttttagcttg aagctaacag cataaatcca gcgtttgctc tcgagagttg       480
     gcgaagtccc cgatttccgt accgtaca                                          508
//
ID   BEL-695_AA-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-695_;
KW   BEL-695_AA-I; BEL-695_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5986
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 316-316 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..5985
FT                 /product="BEL-695_AA-I_1p"
FT                 /translation="MVKSGNFTLTPCGVCSDTSDTNEGMVGCDACDLWFHF
FT                 RCVAVSDEFLADLDKWFCPSELCQKAGEEFTKKRDERKKGTKTKGSKSLAP
FT                 EESDKSSVKSDRPSGSTLEKRLKALEKEQRAKEREMEEERILREKRMEMDR
FT                 ILKERQLKIENELREKEMLLEKEMLEQALRDEKAHADRMQQMRESYQNAIK
FT                 GVKSMTMTTLGVESKFENVEEKIFDAGEGRSSQQKLLKTPLRNPGVSFRSG
FT                 PEKHKKSVEKNSHRAEKSEESSEEEYNSINESSDEESNDAYGNSETSSEEN
FT                 QGESQYESEKSTSSEDNLRRRKKRVPHGLGRQLTTPTKAQLAARNGLSKKL
FT                 PVFTGNPEEWPLFIGSFEASNKACGFNDVENLVRLQESLKGSALESVRGQL
FT                 LLPKSVPKVINKLRQLYGRPEQLLHCHLEKVKRLDPPKADKLETFVPFGNV
FT                 VEQLCDHLEAAGLKDHLVNPLLIQDLVDKLPAGDKRGWVRYRNKKKTVTLR
FT                 TFSNFLSKIVAEACAANVCLQSKQEYKPKQVQIGGARNKEKGAVYSHSVTE
FT                 NPNNSSVTVEEQKLKPCKACKRTDHRLRFCQDFKGMSFDDRKSMIEKFKLC
FT                 KVCLNDHGNAPCKFKIRCNVGECQERHHPLLHPMENLVVLNTHIRVPSSIM
FT                 FRMVPVTLHCGTKNVTTLAFLDEGSSITLIERSLTNRLYAEGIKWPLTIKW
FT                 TANVTREEPDSKMLNLWITALGNEEKLPLYAAHTVEKLLLPKQSLKSTALA
FT                 TKYSHLRNISIDSYSDQHPGLLIGLNNLHTIAPIEAKIGKIGEPVAVRSKL
FT                 GWSVYGPTSERKESAEIVGHHHGISNEDLYNLLKEHYAVEESVVAVVQESK
FT                 DEKRAREILERTTIRVGDRFETGLLWRTDDISFPDSLPMAFRRLKQLEQRL
FT                 EKSPHLYEKIRELIDDYQQKGYAHLATTKELTDTDPQKRWYLPLNYVQNPK
FT                 KPTKIRLVWDAAATVNGISLNSQLLKGPDMLTPLTAVLSLFRERRIAFGAD
FT                 IREMYHQLRIREDDKQAQRFIFRKNPQDAEPSVYIMDVATFGSSSSPCSAQ
FT                 YIKNLNASEFLVMYPEAAAAIIDKHYVDDYYDSVDTAEEAIRRAKEVRFIH
FT                 SKAGFEIRNWVSNSDEVIQSLGERNPMQDVHFNVDKSTENERVLGIVWSPR
FT                 QDTFSFTTDHRPELKPFIDGTRRPTKRLVLSCVMSFFDPLGLLAPFTIHGK
FT                 ILVQDLWRTGCGWDEEIDEGALQKWKRWTSLLSQVADIRIPRCYIGDAFST
FT                 AIESLQLHIFMDASEHAYGCVAYFRTVVDGKVRISLVTSRSKVAPLKRQSI
FT                 PRLELMAAVLGSRLLRTVQQQHSLPILNYFLWSDSQTVLSWIRSDQLKYKQ
FT                 FVAFRIGEIREHTNISNWRWISTKTNIADVITKWGQGPPLESNSAWFNGPK
FT                 FLLESENRWPVGLLPAVDTNEEMRSSVLHHEAVNVDPIINVNSTNKFVRLL
FT                 RSTAYVIRFIANCRRKAVDHPIFVSKATPKQESLLIAEPEAVQQPLQQDEL
FT                 CAAEVALWKQAQRDGFMEELRILDKNQQCEGAPKRIAKSSPLYKMNPILDT
FT                 EGVMRVGGRLQQAEYATFDMKHPIILPKGHAITNMLILRYHEKFAHGNRET
FT                 VCNELRQRFHVPKLRQAIRQAVKNCIWCRVNRCLPQNPMMAPLPVQRVTPQ
FT                 LRPFSSVGIDYLGPVEVLVGRHWEKRWIALFTCLAVRAVHLEVVHGLTTQA
FT                 CLMAVRRFICKRGTPDEFFSDNGTNFKGACNELEKIKQIDRECAESVTSST
FT                 LKWNFIPPGTPHMGGIWERMVRSVKEALKALNDGRKLTDEILLTSLSEAED
FT                 AINTRPLVYLPQDAMETEAITPNHFLRGVMKKADFIIDDSADFAVALRDSY
FT                 KRSQYLANQLWQRWCKEYLPTINLRSKWVEDRKPLQVGDLVFIVNEGQRKN
FT                 WTRGIVHEVFEGNDGRIRQVNVRTTKGISRRAVNNLAIIEVTSKSGISGTG
FT                 SEPELRAG"
XX
SQ   Sequence 5986 BP; 1835 A; 1304 C; 1470 G; 1377 T; 0 other;
     aactaaaaaa ttgataatcg gataacctca aacacgatgg tgaaatcagg caactttacg        60
     ttaactccct gtggtgtttg ctcagacacc tcggatacca atgaaggtat ggtaggatgt       120
     gacgcatgtg acctttggtt tcattttcga tgcgtagctg tgtcggacga gttccttgca       180
     gatttggaca aatggttctg tccatctgag ctctgtcaga aagctggaga agaattcacc       240
     aagaagcgag atgagcgaaa aaaaggtaca aaaacaaagg gatcgaagtc attggcaccc       300
     gaagaatcag ataaatccag cgtgaaatct gaccgtccgt cgggatcgac attggaaaag       360
     cgtctgaagg cattagagaa ggagcagaga gccaaggaac gggagatgga ggaagagcgg       420
     atcttgaggg aaaaacggat ggaaatggat cggattctga aggagaggca gctgaaaatc       480
     gagaacgaat taagggaaaa agaaatgctg ctcgaaaagg agatgctaga gcaagcactt       540
     cgcgacgaga aagcccatgc tgatcgtatg caacagatgc gagaatcgta tcaaaatgcg       600
     atcaaaggag ttaaaagcat gacgatgaca acccttggcg ttgaatcgaa gttcgagaat       660
     gttgaagaga agatatttga tgcaggagaa ggtcgatcgt cgcagcaaaa gttgttgaag       720
     actcccttgc gtaatccagg cgtttcattt cggtcgggtc cggaaaagca caagaagtcg       780
     gtggagaaaa atagccatcg tgctgaaaag tctgaagaaa gttcggaaga agagtacaat       840
     tccatcaacg aaagcagtga tgaagaatcc aacgatgcct atggcaattc ggagacctca       900
     tcggaagaaa accaaggaga atcacagtac gaatcggaga aatcaacatc gtccgaagac       960
     aatttgcgcc ggaggaaaaa gcgagtgcca cacgggctgg ggcggcaact gacaacacca      1020
     acaaaagctc agttggccgc gcgcaacgga ctttccaaga agcttcctgt atttactgga      1080
     aaccctgaag agtggccgct gttcattggc agttttgaag catcaaataa agcctgtgga      1140
     ttcaatgatg ttgaaaattt agtacgcctg caggagagtc ttaaggggtc ggccttagaa      1200
     agtgtccggg gacagctatt attgccgaag tcagttccga aggtaattaa caaactccga      1260
     caactctacg ggcgtcctga acagttactg cactgtcacc tggaaaaggt gaaacgactc      1320
     gaccctccaa aagcggacaa attagaaacg ttcgttcctt tcggaaacgt ggtagaacaa      1380
     ctgtgcgatc acttggaggc agcaggcttg aaggatcact tagtcaaccc actcctcatt      1440
     caggatttag tggataaatt accggctggt gacaagcgag gatgggttcg ataccgaaac      1500
     aaaaagaaaa ctgtcacgct gcggaccttt tcaaactttc tctctaaaat agttgcggag      1560
     gcatgtgcag caaacgtgtg tcttcagagc aaacaagaat ataaacctaa acaagtacag      1620
     ataggtggag cgcggaacaa ggagaagggg gcggtttatt cgcatagcgt gactgaaaat      1680
     ccaaataata gttccgttac cgttgaagaa caaaagctga aaccatgcaa ggcttgcaaa      1740
     agaacggatc atcgcctccg tttttgccag gacttcaaag gaatgagctt tgatgaccgc      1800
     aagagcatga ttgaaaaatt caagctttgc aaagtttgtc ttaacgatca tggtaacgct      1860
     ccatgtaaat ttaaaatccg ctgcaatgtg ggagagtgcc aggagcggca tcatccacta      1920
     cttcatccga tggaaaactt agtcgttttg aacacgcaca tccgtgtacc gagctccatt      1980
     atgttccgga tggttccagt tacattacac tgtggaacga aaaacgtcac gacactggcc      2040
     tttcttgatg aaggatcatc aatcaccctg attgaacgct cgctcacgaa tcgtctgtac      2100
     gctgaaggaa ttaagtggcc gcttaccatt aaatggaccg ccaatgtcac tcgtgaagaa      2160
     ccagactcca agatgctaaa tttgtggatc accgctttag gcaatgaaga gaagcttccc      2220
     ctttatgcag cgcatactgt agaaaaattg ctgcttccga aacagtccct caaatcgact      2280
     gccctagcca cgaagtatag ccatctacga aacatatcaa tcgactcgta ttcagaccag      2340
     catcctggac tgcttatagg tctaaataat cttcatacca tcgcacctat cgaagccaag      2400
     atcgggaaga ttggagagcc tgtagcagtg cgatcgaagc tcggctggtc ggtttatggt      2460
     cctacgtcag aacgaaaaga gagtgcagaa atcgttggac atcatcatgg aatcagtaat      2520
     gaggatcttt acaatctact gaaggaacat tacgctgtag aggaatcagt tgtagcggta      2580
     gttcaagaat ccaaggacga aaaaagagcg cgagaaattc ttgagcgaac aactatccga      2640
     gtaggtgacc gttttgaaac aggcctattg tggagaacgg acgacatctc gtttccagac      2700
     agccttccta tggcatttcg gaggctaaaa caactagagc agagactcga aaagtcaccg      2760
     catttgtacg aaaagatcag agaattaatt gatgattatc agcaaaaagg atacgctcat      2820
     ttggctacga cgaaggaatt gaccgacacc gacccacaaa agagatggta tcttccgttg      2880
     aactacgtac aaaacccgaa gaaacccaca aaaattcggc tggtatggga cgctgcggct      2940
     acggtgaacg gtatatccct aaacagtcag ttactgaaag gccccgacat gctcacgccg      3000
     ctaacagccg tactcagtct ttttcgagag cgtcgtattg cctttggggc cgacatacgc      3060
     gaaatgtacc accaactacg cattcgtgag gacgacaagc aagctcaacg gttcatattc      3120
     aggaagaatc cccaagacgc ggagccgagc gtgtacatca tggatgtagc aacattcggg      3180
     tccagcagct ccccttgttc ggcccaatat atcaaaaatc tcaacgcgtc ggagttttta      3240
     gtgatgtatc cagaggcggc ggctgctatc attgacaagc attacgtcga tgactattat      3300
     gatagtgtcg acactgccga agaagcaatt cgccgtgcaa aagaggtacg tttcatccac      3360
     tctaaggcag gttttgaaat aagaaactgg gtttcgaact ccgacgaggt tattcaaagt      3420
     ctgggagaac gaaatccaat gcaagatgtt catttcaacg tcgacaaatc aacggaaaac      3480
     gaaagagtcc ttggaatagt ctggagtcca agacaggaca ccttttcatt cacaaccgat      3540
     catcgcccgg aactaaaacc attcatagat ggtactcgtc gaccaacgaa acggttggtt      3600
     ttaagctgcg tcatgagctt ttttgaccca cttggacttc tagcaccgtt cacgatccac      3660
     ggcaaaatac tcgttcagga tctatggaga acgggatgtg gctgggacga agaaatagac      3720
     gaaggtgccc tacaaaaatg gaaacgctgg acaagtttgt tatcgcaggt ggcagatatt      3780
     cgaatccctc gttgttacat cggcgatgct ttttcaacgg caatcgagtc tcttcagctg      3840
     cacatcttca tggatgcaag cgagcatgct tacggatgtg ttgcttactt ccggacagtg      3900
     gtggacggta aagtgaggat ttctcttgtg acttcccgtt cgaaggtagc gccgctaaaa      3960
     cgccaatcta ttcctcgtct tgagttgatg gcggcggtac taggatcacg tttgctacgc      4020
     acggttcaac aacagcactc ccttccaata ctaaactatt ttctatggtc agattcccaa      4080
     acggttctta gctggattcg ttctgatcag ctgaaatata agcaatttgt agcgtttcgc      4140
     attggagaga ttcgagaaca cacgaatatc tcaaattggc ggtggatttc cactaaaacg      4200
     aacattgctg acgtaataac aaaatggggt caaggacctc cactagaatc caacagtgca      4260
     tggttcaatg gaccaaaatt ccttttggag tctgaaaacc ggtggccagt gggacttctg      4320
     ccggccgtcg atacaaacga agaaatgcgc tcatctgttc tgcatcatga agctgtgaac      4380
     gtcgatccaa tcatcaatgt gaattcaaca aataagttcg ttcgtcttct tcgtagtaca      4440
     gcctacgtca ttcgattcat cgcaaactgt cgtcgaaagg ccgtagatca tcccatattt      4500
     gtgtccaagg ctactcctaa acaagaaagt ctgctaatag cggaaccaga agcagttcaa      4560
     caaccactac aacaagacga actatgtgcg gctgaagttg ccttatggaa acaggctcaa      4620
     cgcgatggat tcatggaaga attgagaatt ttagataaaa accaacaatg tgaaggagct      4680
     ccgaaaagaa tagccaagtc aagtccatta tacaaaatga atcccattct ggacaccgaa      4740
     ggagttatgc gtgtcggagg aaggttacag caagctgagt acgctacgtt tgatatgaag      4800
     catccaataa tccttcccaa gggacacgcg attaccaaca tgctgattct gcgctaccat      4860
     gagaagtttg cccatgggaa tagagaaacc gtgtgtaacg aacttcgcca gcggttccac      4920
     gttcccaaac tacgtcaagc tattcgtcaa gcagtgaaga attgtatctg gtgtcgtgtt      4980
     aaccgctgtc taccacaaaa tccaatgatg gcaccgctgc ctgtgcagcg agtaacacca      5040
     cagctacgcc cgttcagttc cgtcggcata gattatttgg gacctgtaga agtattggta      5100
     ggccgacatt gggagaaaag atggatagca ctctttacgt gcctagcagt acgcgcagtg      5160
     cacctagaag ttgtgcatgg cttaacaaca caagcatgtc taatggcagt ccggcggttc      5220
     atttgcaaac gtgggacacc agacgaattt ttctccgaca atggaaccaa ttttaaagga      5280
     gcatgcaacg agctggagaa gattaagcaa atcgaccgag aatgtgctga aagcgtgact      5340
     agttccactc ttaagtggaa ttttattccc ccgggtactc cacatatggg cggaatctgg      5400
     gaacgcatgg tgcgttccgt gaaggaagcg ttaaaagcac taaacgatgg tcgtaaactt      5460
     acagatgaga ttctactaac ttcgttgtct gaagcagagg atgcgatcaa cactcggccg      5520
     ttggtgtacc taccacagga tgctatggaa accgaggcaa taactccaaa ccattttcta      5580
     cgaggagtga tgaagaaggc tgatttcatc atcgatgact ctgcagactt cgctgtggct      5640
     ttgcgagatt catacaaacg gtcgcaatat ctagcaaatc agttgtggca gcgttggtgt      5700
     aaagagtatt tgcccaccat taacctacga tctaaatggg tcgaagatcg aaaaccatta      5760
     caggtaggtg atttggtatt catagttaac gagggacagc ggaagaactg gactcgaggc      5820
     atagttcacg aggtatttga aggcaacgat ggtaggattc gtcaagtgaa tgttcgaacg      5880
     acaaaaggta tatcaagaag ggctgttaac aacttagcga ttatagaagt tactagtaaa      5940
     tccggcatct ccggaacagg atcagaaccg gagttacggg ctgggg                     5986
//
ID   BEL-695_AA-LTR repbase;    DNA;    INV; 647 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-695_AA-I;
KW   BEL-695_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-647
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-647
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 283-283 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 647 BP; 249 A; 92 C; 121 G; 185 T; 0 other;
     tgtgctgaaa accgctgggt aggtcatgac agtctagcag acaatgcgca ttgttgatgg        60
     gacgtttttt gatggataga taaagtaaag gaacgagaat caaaataaaa caaaacctgt       120
     tggaaagcaa acgtggaata caatttgtgg tatagaaatc aaattaaata gtgaatttat       180
     aactaatctc attcaaataa cgtgtaaatc attagtttcc gtgagcatta ttgccggtaa       240
     attgttaaaa ctatctaact agaactataa attaaaaata acatgctatc tattctaggg       300
     atcttaaaac gtgtacgaag aggttaaata gtaaaaaata attgagctta aactaagggt       360
     ttaacgtcta cttagcctag ttgaattata gcgtgagtaa ctataacctt tatatgtaca       420
     attattggaa aatacctaat tggaatacta tatacagcag aaaatatcaa ctagtgcact       480
     ccgactgaac actggtggca ggaggtccta gaatctaaac tatcaattgt aagtacaatg       540
     ttaaaactca tagaatcagg ctaatgacaa aaatttgaat tacagtttta gctgctatta       600
     agctgctcag aaaaggtggt gcgagtttct aaaagaaaat ccgaaca                     647
//
ID   BEL-696_AA-I repbase;    DNA;    INV; 5980 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-696_;
KW   BEL-696_AA-I; BEL-696_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5980
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5980
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..5921
FT                 /product="BEL-696_AA-I_1p"
FT                 /translation="MVQCGRCLKWHHFSCVGVDQSVAELVWYCRTCLGEDV
FT                 SARESLGQPGVTRVQPPRAAKKGKDHTGKSKDKTVQRRIEVPVSTKDRKEV
FT                 GDPSGGQHVINKGQVECQPGTSKAGGISCSDKLLSNNPSRNRYSASNRNSY
FT                 SESQKSVESSERSRSTGNNSKSKGSKRDLALMRIEEMKERSRLEAMEEENQ
FT                 LQMLKLKQKQIERKRRELEELQQLSKLVEEESECNEENELQDNIEVDYIDK
FT                 VQGWMSSCHALDSGRRRELPNPSESGGGEFAIMSTADTDGMARRRYIQQKS
FT                 SSMLAGPSKLQIASRQVFPKNLPSFSGHPQDWPLFISAYEQANVSCGFTNA
FT                 ENLVRLQQALQGKALETVRNMLLLPENVPTIIEKLRRRFGNPEILSAMLAQ
FT                 RIQKLDGPDSENLESVIEFGSAIEEFTQHLEVSKLNDHLKNPILMQGLIQK
FT                 LPPCYAMQWVEYKRRSRVVDLKTFGKFMEDLVDKALEVTFQRIDLISTKKR
FT                 EKPKAKVFTHLMEDDREASSTKHVHQSNRVQAQTSARKDISCSICEELGHF
FT                 GRDCQEFRNASVEQRWRMVRHLNLCALCIYDHGKWPCKSKIQCEVKGCKDP
FT                 HHPLLHPPTYAEAVHKEARCNSHCSLNKTVLFRIIPVTLYSEANKFSTLAL
FT                 VDEGSSTSLIDSEIAEFLQLNGPREPFEMRWTNGISRTETHSRSVEMKISG
FT                 RNSKNYDTCIARTVKKLELPSQRLDATQLVEEFQHLGDIDIQSYELDTPKL
FT                 LIGIDNMHIIAPLASRVGKKGEPIAVRCKLGWTVYGPRPNMIADVHFLGHH
FT                 RCVCEECSKADQELSQMLRDNFQLEAVGVSPVRLESKQDCKARSILERTAK
FT                 RIGNRFEIGLLWKDKIPTFPDSYSMAYKRLKNLEVRLNRNPGIRENLQKQI
FT                 EDYLAKGYAHKITDRELIETPPDRCWYLPLSYVVNPKKPGKIRMVWDAAAK
FT                 ANGVSFNDSLLKGPDMVASLSTVINGFRERRVAFGGDIREMFHQIFVRHED
FT                 RQAQRFLFRYDVNCEPDIYVMDVVIFGASCSPCLAQFVKNMNALEHLQQYP
FT                 AAADAVIRKHYVDDYFDSVDTEDEAIERAKDVRTVHAQAGFEIRNWMSNSP
FT                 KVLAELDSSYESKEAKSLDRNNSDSEKVLGVMWRSDLDSFVFSTEIREDLR
FT                 QYVTEGAWPTKRIALRCVMSMFDPKQFLAPLLIHGRILMQDLWRSGIGWDE
FT                 KIGQVHYKQWLRWTGLFPLINNIRVPRCYLGEMSRSAYDSVQLHVFTDAGE
FT                 DAYGCVAYFRFVDDKNVHCAFVEAKAKVAPLQYLSIPRKELEAAVLGARLL
FT                 KTICENHSVKVKKCYLWTDSNAVISWVKSDVRRYKPFVAHRIGEILSITNP
FT                 ENWNWVPTKSNAADDVTKWGLPTQISSDSRWFRGPEFLYKPEEEWPEQKQK
FT                 VFEAKEELRASVLLHEIILPDVILSRLEHISKWKVLVRTVATMYRFATNCQ
FT                 RRTKKQPIEALPSPRKGVIKVPAELVPLRQAEYLAAENFLWRVAQGAVFPD
FT                 EVKTLIRNQQPSVQQLETIEKSSPLYRLSPFLDEYGVIRMEGRTTAAKYAA
FT                 FDVRFPIVLPKEHPIVRKLVEFYHEECGHGSREMVVNEMIQRFYIPRLRSL
FT                 VESTAKKCVWCKIQKAKPAVPRMAPLPSSRLAVSEHPFAYVGLDYFGPLEV
FT                 IVGRRREKRWVALFTCMTVRAIHLEEVYSLTTKSCEMAIRRFVKRRGSPIE
FT                 IFSDNGTNFVGASRDLAEQIRTINIECADTFTGARTKWTFIPPSAPHMGGV
FT                 WERMVRSVKEAMSALMNGERLTDEILQTALVEAENLINSRPLTYVSTNVKE
FT                 DKEALTPNHFLRGCSLVESTETQSSVDLADRLRNSYNQAQYLAEELWSRWQ
FT                 REYLPTMNRRTKWFEEMKPMAVGDLVYVADTEKRRTWERGIIEEVFPGSDG
FT                 RVRSAMVRTNTGLKKRAVAKLAVLEIGG"
XX
SQ   Sequence 5980 BP; 1843 A; 1147 C; 1555 G; 1435 T; 0 other;
     ctcaaaaaga tttaacttcg gatgtgatct acccatgttg cgagagagat gatcagtatg        60
     acgggatggt gcagtgcggt aggtgtctga aatggcacca cttttcatgc gttggtgtgg       120
     accaaagcgt agctgagctt gtttggtact gccgtacgtg cctcggtgag gacgtatcag       180
     ctcgtgaatc gttaggacaa ccaggagtca cccgtgttca acctcctcgt gcggctaaga       240
     agggtaaaga tcataccggt aagtccaagg acaagaccgt gcagagacgg atagaggtgc       300
     cagtcagcac gaaagatcga aaggaagtag gtgatccttc cggtgggcaa catgtaataa       360
     ataaaggtca ggtagaatgt caaccaggga cgtctaaggc gggagggata tcatgttcag       420
     ataaattgct gtcgaacaac ccgtcgcgaa atcgctattc cgctagtaac cgaaattcgt       480
     actcggaaag tcaaaagagt gttgaaagtt ccgagagaag tcgtagtacg ggtaacaaca       540
     gtaagtcgaa aggttctaaa cgtgacttgg cgctgatgag aattgaagag atgaaggagc       600
     ggtcccgttt agaagccatg gaagaagaaa atcagctgca gatgctgaaa ttgaagcaga       660
     aacagattga acgaaagcgt cgagagctag aagaattgca acagctatca aaattagtcg       720
     aggaagaatc cgaatgcaac gaagaaaatg aactacagga caacatcgag gtggattaca       780
     tcgacaaggt tcaaggttgg atgagttcct gtcatgcact ggattcggga aggcggcgag       840
     agttgccgaa tccatctgaa agcggtggag gcgaatttgc gataatgtca acagctgata       900
     ccgatggaat ggcgagacgt cgttacatac agcagaagag ttccagtatg ctggcagggc       960
     cctcgaagct tcagattgcc tcacgtcaag tgttcccgaa gaatctgcct agtttttcag      1020
     gtcatccgca ggattggcct ctgttcatta gtgcttatga gcaagccaat gtgtcgtgtg      1080
     ggttcactaa tgcagaaaat cttgtcaggc tgcaacaggc attgcaagga aaggctttgg      1140
     aaactgttcg gaatatgttg cttctaccgg agaatgtacc aacgattata gaaaagcttc      1200
     gtaggcgttt tggaaatcca gagattctgt cagcaatgct ggcacaaaga attcaaaaac      1260
     ttgatggtcc agattcggag aacttggagt ccgtaattga attcggaagt gcgattgaag      1320
     aatttactca acatttagaa gtttctaaat tgaacgatca cttgaagaat ccaattctca      1380
     tgcaaggttt aatacagaag ctgcccccgt gctacgccat gcaatgggta gaatataagc      1440
     ggcgttcgcg agtcgtagat ttgaaaacct ttgggaaatt catggaagat ttggtggaca      1500
     aggcattgga agttactttt caaagaatag atttaatttc caccaagaag cgtgagaaac      1560
     cgaaagccaa ggtgttcacc catttgatgg aggatgatcg tgaagcaagt agtacaaaac      1620
     atgtccacca gagtaacaga gtacaggcgc aaacatctgc aagaaaagat attagctgct      1680
     ctatttgtga agaacttgga cattttggtc gagactgtca agagttccgt aatgctagcg      1740
     tagaacaaag atggaggatg gtgaggcatc taaatttatg cgcgctttgc atttatgatc      1800
     acggaaaatg gccttgtaaa tcgaagattc aatgtgaggt caaaggttgc aaagatccac      1860
     atcatccatt gctgcacccc ccaacctacg cagaagctgt tcacaaggag gcacgttgca      1920
     acagccattg ctcgctgaat aaaacagtgt tatttcgcat aattcccgtt acgttatata      1980
     gtgaggccaa caagttcagt acacttgcat tagtggatga aggatcttca acatcactta      2040
     tcgacagtga aatagccgag ttcctgcagt taaatggtcc acgagaaccg tttgaaatgc      2100
     gctggacgaa tggaattagt cggaccgaga cacattcaag aagtgtagaa atgaagattt      2160
     cggggagaaa tagtaaaaat tacgacacgt gcattgcaag aacggttaaa aaattggagc      2220
     tacctagtca acgattggat gcaactcaac tagttgaaga attccaacac ctcggagata      2280
     tcgacattca gagttacgag ctagatactc ccaaactttt gattggtatc gacaacatgc      2340
     atattattgc accattggca tcacgagttg ggaagaaagg agaaccaatt gctgttaggt      2400
     gcaagctggg ctggacggta tacggaccgc gaccgaacat gatagcagat gtacatttcc      2460
     tagggcatca tagatgcgtt tgcgaggaat gtagtaaggc tgaccaggaa ttaagccaga      2520
     tgttgcggga taattttcag cttgaagcag ttggagtttc gccagtacga ctcgaatcga      2580
     aacaagactg taaggctcga agcattcttg aaagaacagc aaaacgtatt ggcaatcgct      2640
     tcgagatcgg cctactgtgg aaagacaaaa ttccaacatt tcctgatagt tactcgatgg      2700
     cgtacaaacg gttgaagaac ctggaagttc gattaaaccg aaatccaggt attcgagaaa      2760
     acctgcagaa acaaattgaa gattacctgg ctaagggcta cgcccacaag attacagacc      2820
     gagaacttat agaaacacca cctgaccgat gctggtactt gcccttgagt tatgtggtta      2880
     acccaaagaa accgggaaaa attagaatgg tatgggatgc tgctgcaaaa gcaaatggag      2940
     tttcgttcaa cgatagtcta cttaagggac ctgatatggt tgcatcgcta tccacagtga      3000
     tcaatggatt ccgtgagcgt cgggtggcat ttggtggtga catacgagag atgtttcacc      3060
     agatttttgt gcgacacgaa gatcgtcaag cacagcgttt tttgttccga tacgatgtga      3120
     actgtgaacc agacatttac gttatggatg tggtcatctt cggagcgagt tgttcacctt      3180
     gcctggcaca attcgttaaa aatatgaatg cccttgaaca tctgcagcaa tatccggcag      3240
     cagccgacgc cgttatccga aaacattatg tcgatgacta tttcgatagc gttgatacag      3300
     aagacgaagc aatagagcga gctaaagatg ttagaacagt acatgctcaa gctggctttg      3360
     agataagaaa ctggatgagc aactcaccca aggtattggc agaacttgat tcttcgtatg      3420
     aatcgaaaga agcaaagtcc ctggacagga acaattctga ttcggaaaaa gttcttggag      3480
     taatgtggcg atcagattta gactcgttcg tgttttccac ggaaattaga gaagatctgc      3540
     ggcaatacgt cactgaagga gcctggccca cgaagcggat cgctcttcgt tgcgtcatga      3600
     gtatgtttga ccccaaacaa tttcttgcgc cattattgat tcacgggcgt attttgatgc      3660
     aggacctatg gcgaagtggc attggctggg acgaaaaaat aggacaagtg cattacaaac      3720
     aatggttacg atggacaggt ttattcccgt tgatcaataa catacgtgtt cctcgctgtt      3780
     atcttgggga aatgagtcgt agtgcatatg attccgtgca gcttcatgtt ttcacggatg      3840
     ctggagaaga tgcttatgga tgcgtagcat actttcgttt cgttgacgat aaaaacgtcc      3900
     attgtgcatt tgttgaagcg aaagcaaagg tagctcctct acaatatctc tccattccaa      3960
     gaaaggaact agaggctgct gtattaggag cgagattatt gaagactatc tgtgagaatc      4020
     attccgtcaa agtgaaaaaa tgttatctat ggacggattc caacgctgtt atatcctggg      4080
     taaaatcaga cgtgaggcga tataagccat tcgtagccca cagaataggc gaaatattga      4140
     gtatcactaa tccggaaaat tggaattggg ttcctacaaa aagcaacgca gcggatgatg      4200
     taacgaagtg gggactaccg acgcagataa gttcggacag tcgttggttt cgaggtccag      4260
     aatttttgta caaacctgaa gaagagtggc cggaacagaa gcagaaagtg tttgaggcga      4320
     aagaagagct tcgagcaagt gtgctgttac atgaaatcat actgcctgat gtgatattat      4380
     ccaggctgga gcacatttca aaatggaagg tgctggtacg aacggtggca accatgtacc      4440
     gtttcgcgac taattgtcag cgtagaacga agaaacaacc gattgaagct ctaccatcac      4500
     caaggaaagg tgttataaag gttccggcag aactagttcc actgcgacaa gcggaatact      4560
     tggcagcaga aaatttcctt tggcgtgtgg cgcaaggcgc agtatttcct gacgaggtga      4620
     agacattgat taggaatcag caaccatccg tacaacaact tgaaacaatc gaaaaaagca      4680
     gtccattata tcgactttca ccgttcttag atgaatacgg tgtaatacga atggagggta      4740
     gaacaactgc ggcaaagtat gctgctttcg atgtgagatt cccaattgtt cttcctaaag      4800
     aacatccgat tgtgagaaag ctagtggagt tttaccatga agaatgtggt cacggtagtc      4860
     gagagatggt ggtcaatgaa atgatacaac gtttctacat tccacgtttg aggtccttgg      4920
     ttgaaagtac tgcaaagaaa tgtgtttggt gcaagataca gaaagcgaag ccggctgttc      4980
     ctagaatggc cccacttcca agctcaaggc tggcagtaag cgaacatccg tttgcatatg      5040
     ttggattaga ttattttggg ccactggaag taattgttgg gcgaagacgg gagaaacgat      5100
     gggtagcgtt attcacatgc atgacggttc gcgctattca cctagaagaa gtctacagtt      5160
     tgacaacaaa gtcttgtgaa atggcgattc gtagatttgt aaagcggcgg ggtagcccga      5220
     ttgagatctt ttccgacaac ggaaccaatt ttgttggggc aagcagagat ctagcagaac      5280
     agatacggac cataaacatc gaatgtgctg atacgtttac gggtgccaga accaaatgga      5340
     cctttattcc cccatcagca ccacacatgg gaggcgtgtg ggaacgcatg gttcggtcgg      5400
     tgaaggaggc aatgtcagca ttgatgaatg gagaaagatt aacagacgag atactgcaaa      5460
     ctgctctcgt agaagcggaa aatctgataa actcgcggcc gttaacgtat gtgtccacca      5520
     atgtgaagga agataaagaa gctctaacac cgaatcattt tctacgaggt tgttcattgg      5580
     tcgagagtac agagacacaa agctcagtag atttagcgga tagattacgt aacagctaca      5640
     atcaagcaca atatctagca gaagaactat ggagtcgttg gcaacgagaa tatttgccaa      5700
     cgatgaatcg gaggactaag tggttcgaag aaatgaaacc aatggctgta ggagatttgg      5760
     tgtacgtagc agatacggag aaacgaagaa cgtgggaacg cggaatcatc gaagaagttt      5820
     tcccaggaag tgatggacga gtacgatcgg caatggtacg aaccaatacg ggactcaaga      5880
     agcgagcggt ggcaaaacta gccgttctag agattggagg atgaaggagg taagcgctga      5940
     agtgatgccc atcaccgaca gggcttacgg gccggggaga                            5980
//
ID   BEL-696_AA-LTR repbase;    DNA;    INV; 542 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-696_AA-I;
KW   BEL-696_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-542
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-542
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 295-295 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 542 BP; 174 A; 78 C; 124 G; 166 T; 0 other;
     tgttacgccg ggagtgagag ggttttttgc gtgaacgcta cctgtggtgc atgaccatgt        60
     ctaagcacat gactaggccg atgtaaacac agggcgctga catattggaa tgttatgggc       120
     attgtattgt tgaaaattta gattgttgag attcgctaga taattaaatt gagatagcct       180
     gaaataaaaa tagaaatagt ggtatacctt gatcgataat agaattgata ccgttcacta       240
     gaggggtctg cctaaatcgg attggattag atttgaagaa taacttaccg taagttgtcg       300
     taaattgaat tcatgaattt atcatcaata gagctaatta tagggttgaa cataggaagt       360
     tagtgctgtg agattcgtgg ggtctgaatt gtgaacagga aactaaatct gtaagttgta       420
     tcatttatgt aacataaaat caatgtaatt tacacagcta ttgaattaca gttttgagtt       480
     tgcgagcaac atactccaaa aagtgttttc taagatgatg gcccgaactc ctcccagcaa       540
     ca                                                                      542
//
ID   BEL-697_AA-I repbase;    DNA;    INV; 5873 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-697_;
KW   BEL-697_AA-I; BEL-697_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5873
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5873
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 317-317 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..5870
FT                 /product="BEL-697_AA-I_1p"
FT                 /translation="MEGLHEDSSKFHCRRCNRPDAAESQMVACDKCNQWEH
FT                 FGCAGVDESVKSRSFSCRECTHGETSQATKADGKSNRAGKSIASKRSRKVV
FT                 SRAPVSVSSSARVAMLEAQMKLLEEEQLMKEKAAQEQEAIREREHEEKRRQ
FT                 IEEKKRLMEEEKMLRELKLAEDKQFQAKQALMRQESLEQKRQLLQQIAESS
FT                 KGTSSTSSIISNDEKVKDWLKTQNREASKEAEEEGAANAIKHPTKPLKEVS
FT                 CRDPVEGLQADLSAVDLNAQRPIPRDTSTPQHPCLPQRMLVSEPLRLGNPS
FT                 PGSSSSPAETPTLLGTHQIAARQVIGKELPIFSGNPEDWPIFISSFEQSTS
FT                 TCGFSNAENLVRLQRSLKGHALESVKSRLLLPSGVPHVISTLRTLYGRPEL
FT                 LIRALLKKIRQVQAPRHDKLETIMEFGLAVQNLVDHLEAAHQENHLANPVL
FT                 MQELVEKLPGTLRLDWAVYKYRDEVPTLRTFGDFMTRLVTAASEVTFELPS
FT                 DLLSARSERPRQKERAHIQAHFSESAIEGSRKPTKVCVVCDREGHRVGECY
FT                 AFKAMSVDERWQIVQQKGLCRTCLNSHGKWPCKSWQGCEQEGCRLKHHSLL
FT                 HPPSVSHSVNVSSTISQTEFSVPFFRIIPVVLYEKNCSQMVFAFIDEGSSS
FT                 TLLEETVAKKLGAIGQAEPLTLQWTGNVTRDEHSSQRVQLQIAGKNSAVRH
FT                 PLVAHTVGRLELPSQSLKYHELADRFPHLRGLPIDDYELVQPKILVGLDNL
FT                 HLGVPLKIRQGQPTEPIAAKCKLGWGVYGGMPNFSPGNAVISLHVADIADP
FT                 DRLLNEQLRDYFALENMGVNNNNETLESDEDKQARILLEKTTRRTKDGFET
FT                 GLLWKSGCPNFPDSYPMAIRRLQSLERRLSKEPQLHDRVCQQIEEYQSKGY
FT                 AYKASDGELASVDPKRVWYLPLGVVVNPKKPNKVRLIWDAAAKSAGVSFNS
FT                 QLLKGPDLLTPLPTVLSQFRQFPIAVCGDIKEMFHQIKIREQDRQSQRFLW
FT                 RNKPSDPPQIFVMNVATFGSTCSPASAQYVKNINAQELAGQYPRASEAIQK
FT                 KHYVDDYLDSFLNEPEAISVVNEVKAVHCRGGFELRNFLSNSVMVLEGIGE
FT                 LPTDESKHLALERGITMESVLGMRWMPKDDVFTYSFALRSDLQSILATDHI
FT                 PTKREVLKMLMSLFDPLGFICFFLIHGKVLMQDIWASGIGWDDQINNELYQ
FT                 RWRQWSDLFPRLDMLQIPRCYFTSPFPTDIQHLQIHVFVDASEAAFACVAY
FT                 FRLASKYGVQVSLVGAKTKVAPLKPLTIPKLELKAAVLGVRFLESTQNHHT
FT                 YQIAQRFLWSDSTTVLSWINSDHRRYTKFVAFRIGEILSVTNQKEWRWVPS
FT                 KMNAADEATRWNNGPNLRSDSAWFRGPSFLYEPEEKWPLQKQIPTTQEEIR
FT                 SVNHHCKSVPLIDVSRFSRWTRLHRTIAYIIRFIDNLHRKRNGLQIKLEHL
FT                 QQDELQRAERILWKQAQAEAFPTEIKALRTTQGEASNIYPTVHKSSPIYKT
FT                 LPFLDKQGVLRMRSRSGAAPFASFDAKYPVILPRQHRTTFLITDWYHRQYR
FT                 HANRETVVNEMRQRFEIGRLRALIVKVIDACSHCRLFNATPRTPIMAPLPE
FT                 FRLTPFVKPFTTVGLDYFGPVLVRIGRSQSKRWIALFTCLTIRAVHMEVVH
FT                 SLSTESCIMAIRRFVARRGPPAEIYSDNATCFLGASNQLKREITERSETLA
FT                 STFTNTQTRWRFIPPGTPHMGGAWERLVRSVKVAMGSIFESARKPDDETLE
FT                 TIIYEAEALVNCRPLTYIPLESADQEALTPNHFILGSSTGAKFPPTELVSS
FT                 AATLRSSWKLAQYVTDEFWKRWIKEYMPVITRRCKWFTDTKDIQVGDLVLV
FT                 VSGATRNYWKRGRVVQVFNGRDGKVRQAIVQTSSGLQRCAAVHLAVLDVAK
FT                 SSEPGAVSSKARTNHQGSREG"
XX
SQ   Sequence 5873 BP; 1715 A; 1334 C; 1423 G; 1401 T; 0 other;
     tttccttcaa gaattttgtg gaagtggatc gaaagatgga aggacttcac gaagatagca        60
     gcaaatttca ctgccggaga tgcaaccggc cagatgcagc cgagtcccag atggtcgcct       120
     gcgacaagtg taatcagtgg gagcactttg gatgcgcagg agttgacgaa tcggtgaaat       180
     cacgttcatt tagctgcaga gagtgtacgc acggggaaac atctcaggct acgaaagcgg       240
     atggcaagtc gaatagagcg gggaaaagca ttgcgtcaaa acgatcgagg aaggtggtat       300
     ctcgtgcacc tgtaagcgtt tcgtccagtg cacgagtcgc tatgttagaa gcacaaatga       360
     aactattgga agaggaacaa cttatgaagg aaaaggctgc tcaggagcag gaagcgattc       420
     gtgaacggga acatgaagag aaacgacgtc aaattgagga aaagaaaagg ctgatggagg       480
     aggaaaaaat gttacgcgag ttgaaactgg cggaggataa gcaatttcaa gctaaacaag       540
     cgctcatgcg acaagagtca ctagaacaga agcgacaact tctgcagcag atagcagaga       600
     gtagtaaagg gacatcgtcg actagctcga taataagcaa tgacgagaag gttaaagatt       660
     ggttaaagac ccaaaatcgt gaagcatcga aggaagcaga agaagaagga gcggcaaacg       720
     cgatcaagca ccccactaaa ccattaaaag aggtatcatg tagagatcca gtggaaggtt       780
     tacaagctga cttgtcggcg gtagatctaa atgcacaacg accgattcct cgtgatacaa       840
     gcacacctca acacccgtgt ttaccccaac ggatgttggt tagtgaaccg ctacgcttag       900
     gaaatccgtc cccaggaagt agctcgagcc ccgctgaaac tcctacatta cttggaacgc       960
     accaaatcgc agctaggcag gtgattggta aagagttgcc tattttcagt ggcaatcctg      1020
     aggattggcc aatttttata agcagtttcg agcagtcaac atcaacttgt ggattttcta      1080
     atgcggaaaa cttagtgcgg ttgcaacgtt ctttgaaagg gcacgcactc gagtcagtta      1140
     aaagtcgact cctattacca tccggagtac cgcacgtcat aagcactctg cgaacgcttt      1200
     acgggcggcc agagctgttg attagagctc tattgaagaa aattcgacaa gttcaggccc      1260
     ccagacatga caaactagag accatcatgg aatttggact ggctgttcaa aacctggtag      1320
     atcacctgga agctgctcac caggaaaacc atctcgctaa tccggtgtta atgcaagagt      1380
     tagtggagaa gctaccaggc acgctcagac tagactgggc ggtatacaaa taccgagatg      1440
     aagttcctac cctacgtacg tttggtgatt tcatgaccag attggtaacg gcagccagtg      1500
     aggtgacgtt tgagctacca tctgacctct tgtccgctag atcggaacgt ccgagacaaa      1560
     aggaacgtgc gcatatccaa gctcattttt cggaatcagc aatcgaagga agtcgaaagc      1620
     caactaaagt ttgtgtagtt tgcgatcgtg aaggccatcg tgtaggagag tgttatgcgt      1680
     ttaaggccat gagcgttgat gaacggtggc agatagttca acaaaaagga ttatgccgaa      1740
     cttgcctaaa tagccatgga aaatggccat gcaaatcctg gcaaggatgc gaacaggaag      1800
     gttgccgcct gaaacatcat tccctcctac accctccatc tgtctcccat tcagtaaacg      1860
     tttcttcgac aatttctcaa acggaattct cagttccatt ctttcggata atccccgtgg      1920
     ttttatatga aaagaactgc tcccaaatgg tattcgcctt tattgatgag ggttcatcct      1980
     ccaccctgtt agaagaaaca gtcgccaaga aactaggagc aattgggcag gctgagcctt      2040
     taacattgca gtggacggga aacgtaacac gtgatgaaca tagctcgcaa agagttcaat      2100
     tgcaaatcgc aggaaagaac agcgctgtcc gtcaccctct ggtcgctcat actgttggtc      2160
     gactggaact acccagtcag tccctcaaat accacgagct ggctgaccgt tttccacact      2220
     taagaggact tccgatcgat gattacgagt tggtccaacc caagattcta gtagggctgg      2280
     acaatcttca cctaggtgtg cccctcaaga tacgccaggg tcagcctaca gaaccgattg      2340
     cagccaaatg caaactcgga tggggtgtat atggtggcat gccaaatttt tcacctggta      2400
     atgccgtaat aagtctccac gtggctgata ttgctgatcc tgatcgcttg ttaaatgaac      2460
     agctacgtga ttattttgct ctggaaaaca tgggtgtcaa caacaacaat gagactttag      2520
     aatcggatga agacaagcaa gccaggattt tgctagagaa aaccacacgt cgaacgaagg      2580
     acgggttcga gactggtcta ctgtggaaga gtggttgccc gaactttccc gacagttacc      2640
     caatggctat acgacgtttg cagtcattag aacgtagact gagcaaagaa ccccaacttc      2700
     atgatagagt ttgccaacaa atcgaagaat accaatctaa aggctatgcc tacaaggcca      2760
     gtgatggtga acttgcctct gtagatccga aacgagtttg gtatttacca ttgggcgtag      2820
     tcgtgaatcc taaaaagcca aataaagttc ggttgatttg ggatgccgca gccaagtccg      2880
     ccggagtctc cttcaattcc cagctattga aagggccgga tctcttaaca cccctaccaa      2940
     ctgttttgag ccaattccgg cagttcccaa ttgctgtgtg tggagacatc aaggagatgt      3000
     tccaccaaat aaaaattcgg gaacaagacc gccaatcgca acggtttctt tggcgaaata      3060
     aaccatcaga tcctccccag atcttcgtaa tgaatgtggc cacatttggg tcgacttgct      3120
     caccagcgtc ggctcaatat gtgaagaaca taaatgccca agagctagct ggtcaatatc      3180
     ctcgtgcctc tgaagccatc cagaagaaac attatgtaga tgactatttg gatagcttct      3240
     tgaatgagcc cgaggcaatt tcggtagtta acgaagtaaa agctgttcac tgtagaggag      3300
     ggttcgagct tcgtaacttc ctgtcaaatt ccgtgatggt gttggaaggt atcggtgaac      3360
     taccaacgga tgaatcgaag catctggcat tagaaagagg aataaccatg gaatcagtgc      3420
     ttggaatgcg atggatgccg aaagatgacg tgtttactta ctcctttgct ttgcgcagtg      3480
     atctccaatc aattctcgct acggaccaca ttcctacgaa gcgtgaagtt ctgaaaatgc      3540
     tcatgagttt gttcgatcct ttgggattta tttgtttctt ccttatccac ggtaaggtgc      3600
     tcatgcagga catttgggca tcgggtatcg gctgggatga tcaaataaat aatgagcttt      3660
     accaacgttg gcgacagtgg tctgatttgt ttcctcgact cgacatgctg caaataccaa      3720
     ggtgttattt tacctctcca tttccgacgg acatccagca cctacaaatc cacgtgttcg      3780
     tggacgccag tgaggctgct ttcgcatgtg tggcatactt tcgtttggca tcgaaatatg      3840
     gcgttcaagt ttcgctggtt ggggcaaaga caaaggtagc tcctctcaaa ccgttaacta      3900
     tccccaaatt ggaattaaag gcagcggttt taggggttcg cttcttggaa tcaacgcaaa      3960
     atcatcacac ctaccaaatc gcacaaagat ttctgtggag tgactccacc acggttctat      4020
     cgtggattaa ctcagaccac cgtcgataca cgaagtttgt cgctttccgg attggtgaaa      4080
     tactatcagt aactaaccaa aaggagtgga gatgggtacc ttctaagatg aatgcagcag      4140
     acgaagctac caggtggaat aacggaccca acctgcgctc agacagtgct tggttcagag      4200
     gtcctagctt tctgtatgaa ccagaagaaa agtggccact ccagaaacaa attccaacaa      4260
     cacaggaaga aattcgctct gtaaatcacc actgcaaatc cgtacccctg atcgatgttt      4320
     ctcgcttcag tcgatggact aggttgcatc gaacaatagc atatataatc cgattcatcg      4380
     acaatctaca ccgcaaaaga aacggattgc aaattaaact ggaacatctg caacaagacg      4440
     aattacaacg ggcagaaagg attttgtgga aacaagctca agctgaggca ttccccacag      4500
     aaattaaagc gctaagaact acccaaggtg aagcctccaa catttaccca actgttcata      4560
     aatccagccc catctataag actctaccgt ttctggataa acaaggagtt ctgcgaatgc      4620
     gcagtcgtag tggtgcagcc cccttcgctt cgtttgacgc caagtatcca gtcatcctac      4680
     caaggcaaca ccgtacgaca ttcttgataa ccgattggta tcaccgccaa tatcgccatg      4740
     ctaacagaga aactgttgtt aacgagatgc ggcaacggtt cgaaataggg cgactcagag      4800
     cgttgattgt aaaagtgatt gatgcttgct cgcattgccg cctattcaac gccaccccaa      4860
     ggacgccgat catggcccca cttccggaat ttcgcctaac accctttgtg aaaccgttta      4920
     ccacagttgg actcgattat ttcggacccg tattggtacg tatcggtaga agtcagagta      4980
     aacgttggat agctttgttc acctgtctga ctattcgagc agtccatatg gaagtggtac      5040
     atagcctttc aacggaatca tgtattatgg cgattagaag atttgttgca agacgagggc      5100
     cgccagctga aatttattca gataacgcaa catgtttctt aggtgccagt aatcagttga      5160
     aaagggaaat cactgaacga agcgaaaccc ttgcgtcgac attcaccaat acgcaaactc      5220
     gttggcggtt tatccctcca ggcactccac atatgggtgg agcatgggaa cgacttgttc      5280
     gttcagttaa agttgccatg ggatctattt ttgaatctgc acgtaagcca gatgatgaaa      5340
     cattggagac catcatatat gaagcagaag cattggtgaa ctgtcgacct ctcacgtata      5400
     ttccactaga atcagccgat caggaggctc taacccccaa ccattttatt ctgggtagct      5460
     ctactggggc caaatttcct cctacagagc ttgtaagtag tgcagccact ttgagaagca      5520
     gttggaaact tgcgcagtat gtaaccgacg aattctggaa gagatggata aaagaataca      5580
     tgccagttat aactcgcaga tgcaaatggt tcaccgatac aaaagacatc caggttggcg      5640
     atttagttct ggtggttagt ggagcaacgc ggaactattg gaaacgagga cgcgtcgttc      5700
     aggtattcaa cgggcgagac gggaaagttc gccaagcaat agtacagacc tcgtctggtc      5760
     tacaacggtg cgctgcagtt catctagcgg ttttagacgt cgcgaagagt agtgaacctg      5820
     gagctgtatc ttcaaaggca aggaccaacc accaaggttc acgggagggg gga             5873
//
ID   BEL-697_AA-LTR repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-697_AA-I;
KW   BEL-697_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-674
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-674
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 284-284 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 674 BP; 233 A; 107 C; 131 G; 203 T; 0 other;
     tgttgcgacg atacccctcg ttgcagtagc gtataccagt gttgaagcgt accgaacgtc        60
     gaacagctac ctatactgga catacaaacg tcaacgagat agacaatgat aaggcaattt       120
     ggattgtaaa acactcagca ttatcgaaac ccaaaatttt gcaagtttat taaaaagcat       180
     ttttttattg attctgtggc gaaattgaag cataaaatta gcagtctgtg cctgattcgt       240
     gaattaattc gtagggcgaa cagatagtga gtagatggaa atatgcagat tagagagcaa       300
     atctcattgt cgaaacacta actaatgttt tcttaaatta tattacgtta tagctggcta       360
     aaacttaaaa actaaatcac aggctattct ttggtttgtt cataaaaagt aaaagataaa       420
     gtaagtaaaa gattgaattc gagtatgtta aaagattcat aaccatatat tgtataggat       480
     tgtaccgtat tgctgatttg ctgcacctag ggtggtcgtg aaacgatcct tgtctaccga       540
     gttgatcacc aaaattgtag gtatgaatag aacactgtaa aatcaatgtt taaaaatgaa       600
     ttaaattata gcttgaagct gtgtcagcac tttccgtgtt tgctatcaag atttggagaa       660
     acagcattcc caca                                                         674
//
ID   BEL-698_AA-I repbase;    DNA;    INV; 5953 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-698_;
KW   BEL-698_AA-I; BEL-698_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5953
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5953
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 318-318 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..901
FT                 /product="BEL-698_AA-I_1p"
FT                 /translation="MSDVGEMTMTACGACGTTSEVDERMIGCDNCDRWFHT
FT                 RCVGVTAAAEKESKWFCPATECQQQYSEYLKKVEKEERKKKNKKNKALGDD
FT                 SDRSSIKSARSVNIPGSELEKRLKELEEEQQAKEREMEIEMILLEKRMEME
FT                 RALKEKKMMLENAIRAKQREEENKLMERALADEKNHLAELKKMHDSFEVKM
FT                 SSVQREMKQLQTKREGSEKKEKVLGTPLRNPEVTVPKQLENKKKEEELARS
FT                 YRCEEELDDSEDDSDDEEEEDSNSEEEELEEESEEDSSKKKKKKKKC"
FT   CDS           871..5898
FT                 /product="BEL-698_AA-I_2p"
FT                 /translation="FEEEEEEEEVLMKKGKNAKPKAKKVVANGLGQQRSVP
FT                 TKMQMAARNGVTKKLPVFTGRPEEWPLFIGSYEASTEACGFTDIENLVRLQ
FT                 ESLKGPALESVRGQLLFPKSVPKVISKLRQLYGRPEQLLQCHLEKVRKLEP
FT                 PKADKLATFIPFGTAVEQLCEHLEAAGLKQHLVNPLLVQDLVDKLPAGDKR
FT                 EWVRYKKRKKTVTLRTFTNFLSGIVTEACEANVSVEFKTEVKQGSSGFGKG
FT                 RGKERGAVYNHSATESVVKEPATMVPNKKACKVCKRTDHRLRFCQDFRSMT
FT                 PADRVNFVRKWRLCDVCLNDHGNAECKFRMRCTIGGCTERHNPLLHVGSGM
FT                 VVMNAHIRLNSSIMFRMIPVTLYFREKSLTTLAFLDEGASVTMVEKALADQ
FT                 LGAEGIRQKLEIRWTGDVARVEKDSKRISLKISAVGSPNQLLMNEVCTVGE
FT                 LALPEQSLDARAMSQRYEHLRDLPVTPYKRNRPRILIGLNNLHTMAPIDAR
FT                 LGGPGEPIAVKSPLGWTIYGPNRGAESTNAHVVGYHGEVTNEQIHDLIKSQ
FT                 YALEESVICKVKESEEDKRAREILETTTVRVGDRFETGLLWKADDPQFPDS
FT                 YPMALRRSKQLEIKLGKNPALRESVHKQIEEYQRKGYAHLATPEELANANP
FT                 NKVWYIPLDVVVNPLKGKVRLVWDGRASANGVSLNSQLMKGPDMLASLPAV
FT                 INRFRERRIGFGGDIKEMYHQIRIREEDKQAQRFLFRAAESEPPKVYVMDV
FT                 ATFGSTCSPCSAQFVKNKNAMEYAVEYPEAAEAIVKKHYVDDYYDSVDTEE
FT                 EAIRRASEVKLVHSKGGFEIRNWVSNSAQVLRSLGEQKVDQAVHFNQDKES
FT                 GSERVLGIIWNSKQDTFSFSTEHRDGVKEYLRGDKIPTKRIVLSCVMGFFD
FT                 PLGLLAPFTVHGKILVQELWRTGCDWDEKIEGECLESWKRWMSLLSAVEAL
FT                 RIPRRYFGDLYSSSLRSIELHIFTDASECAYGAVAYFRVAVGDHVRCSLVM
FT                 ARSKVAPLKQQSIPRLELMAAVLGAKLLTTVKTNHSLTVHRQYLWTDSQTV
FT                 LSWIRSDQHKYKQAVAFKIGEILESTSVADWRWVPTRCNIADVLTKWGDGP
FT                 PLVSDSQWFRGPEFLYGAEEGWPVPNIPTANTVEEMKARFLFHDAIRGGPV
FT                 IDVEVTNRWKKLVRITAAVLRFVGNCRRKAGGEPIWTIKASEALVKKIKAG
FT                 MKVVQQPFQQSEFQKAEVVLWKQAQSEGFPDELHALKTERNKGMQVHLLKR
FT                 KSVLYQLKPMLDEDGVLRVDGRLQRAEYMPYDKRFPIILPRNHRITELVIQ
FT                 CYHEAFGHANRETVFNELRQKFHIPKLRAVIRKVVIECVWCKVHRCLPQVP
FT                 LMASLPVQRITPSLRPFSAVGVDYLGPVTVTVGRRSEKRWVALFTCLAVRA
FT                 VHLEVVHSLSTQSCLMAIRRFVCKRGMPQEFFSDNGTNFVGASKEIGRSVK
FT                 QVDEECAEAVMCSTTKWNFNPPGTPHMGGIWERMVRSVKEALKAFDDGRKL
FT                 TDEVLQTTLAEAEDMINTRPLTYMSQESDEQEAITPNHFLRGAVVAEDLKV
FT                 DGPFQLGEALRDVYRRSQYLADKMWQRWYKEYLPGINRRTKWCEERRPLNV
FT                 GDLVFVVDGQNRKSWIRGIVERVMVAEDGKIRQAEVRTSRGVFRRAAANLA
FT                 VLEVRDN"
XX
SQ   Sequence 5953 BP; 1634 A; 1209 C; 1905 G; 1205 T; 0 other;
     ttctcaaaaa gaaatatcgg acgtaacctc gaaagcgatg tcggatgttg gagagatgac        60
     gatgacggcc tgcggtgctt gcggaacgac ttccgaagtg gacgagcgga tgattggctg       120
     cgacaactgc gaccgctggt tccatacgcg gtgtgttggc gttacggctg cagcggagaa       180
     ggagagcaag tggttctgtc cggccaccga gtgtcagcag cagtacagtg agtacttgaa       240
     gaaagtagag aaggaggaaa ggaagaagaa gaataagaaa aataaagcgt taggggatga       300
     ttccgataga tctagtatta agtcagctag gtcagtcaat attcccggtt ccgagttgga       360
     aaaacgtttg aaagagttag aagaggaaca gcaggctaaa gagagggaaa tggagatcga       420
     aatgatcctg ttagagaagc gaatggagat ggaaagggcc ttgaaggaga agaagatgat       480
     gttggagaac gctatccggg caaagcagcg ggaggaggaa aataagctta tggagagggc       540
     tttagcggat gagaagaatc acttggcgga gttgaagaag atgcatgact cgttcgaagt       600
     gaaaatgagt agtgtgcaga gagaaatgaa gcagttgcaa acgaagcgag aaggaagtga       660
     gaagaaggaa aaggttctgg gaacgcctct caggaacccg gaagtaacgg taccgaagca       720
     gttggagaat aagaagaagg aagaagagct ggcgcgttcg tatcgttgcg aggaagaatt       780
     ggacgacagt gaggacgact ccgatgacga agaagaagaa gactccaact cggaagaaga       840
     agaattagaa gaagaaagtg aggaagatag ttcgaagaag aagaagaaga agaagaagtg       900
     ctgatgaaga aaggcaagaa cgcgaagccg aaagcgaaga aagtggtcgc aaacgggctg       960
     gggcagcagc gcagcgtgcc gacaaaaatg cagatggcag cgagaaatgg agtgacgaag      1020
     aagctaccgg tgttcaccgg cagaccggag gagtggccgc tgtttatcgg ttcgtacgag      1080
     gcatccaccg aggcgtgcgg atttacggac atcgaaaatc tagtgcgtct tcaggaaagc      1140
     ttgaaaggac cagcgttgga aagtgttcga gggcagctac tttttccgaa aagcgttccg      1200
     aaagttatta gcaaacttcg gcagctgtat ggtcgtccag agcaactact tcaatgtcat      1260
     ctggagaaag tgcgcaagct agagccaccg aaagctgaca agttggcgac cttcattcct      1320
     ttcgggacag cggtggagca gctctgcgag catttggagg cagcgggctt aaagcaacac      1380
     ctggtgaatc cattgttggt gcaggacctc gtggataagc taccggccgg cgataagcgt      1440
     gaatgggtac gatacaagaa gaggaagaag accgtcaccc ttcgtacctt caccaacttt      1500
     ctgtcgggta tcgtcaccga ggcatgtgag gctaacgtgt ccgtcgagtt caagacggag      1560
     gtgaagcaag gtagctccgg cttcggaaaa gggagaggca aggagagagg tgctgtctac      1620
     aaccacagcg ccacagagtc ggtcgtaaag gagccggcga caatggtgcc caacaagaag      1680
     gcgtgcaaag tgtgcaaacg cacggatcat cgcttgagat tctgccagga tttcaggagc      1740
     atgacgccgg ctgatcgcgt taacttcgtg cggaagtgga ggctttgtga cgtgtgcctg      1800
     aatgatcacg gtaatgcgga gtgtaaattc aggatgcgct gcacgattgg tggttgtacg      1860
     gaaaggcata atccgttgct gcatgttggg tccggaatgg tagtgatgaa cgcgcacatc      1920
     cggctgaaca gcagcataat gttccggatg attcccgtta cgttgtactt ccgagagaaa      1980
     tccctaacca cattggcgtt tttggacgag ggagcgtctg ttactatggt ggagaaggca      2040
     ctggcagatc agttgggtgc agagggcatc cggcagaagc tcgagattag gtggaccgga      2100
     gacgtagccc gcgtcgagaa ggactcgaag cgaatcagcc tgaagatatc ggctgtagga      2160
     agtccgaatc agctgctgat gaatgaagtg tgtaccgtag gagaattggc actgccggaa      2220
     cagtcgttag atgctcgagc gatgtctcag cgttacgaac acctccggga tttaccggtt      2280
     acaccgtata agagaaatcg tccgagaatt ctgatcgggt tgaataatct gcatacgatg      2340
     gcgccgatcg atgcaaggtt aggcggacct ggagaaccga tagcagtcaa atcaccgttg      2400
     ggatggacca tatacggtcc aaaccgtgga gcagaatcga ctaatgctca tgttgtcggt      2460
     taccacggtg aagtcaccaa cgaacagatt cacgacctca tcaagagtca gtatgcgttg      2520
     gaggaatcgg taatttgtaa ggtgaaggag tccgaagaag acaaaagagc ccgagaaatc      2580
     ctggagacga cgaccgttag agttggagat cggtttgaaa ccggattgtt atggaaggcc      2640
     gatgatccac agtttccaga cagctatccg atggccctgc gtcggagcaa gcagttggag      2700
     attaagcttg gtaaaaatcc ggcactcaga gagagcgtgc ataagcagat cgaggagtac      2760
     cagcgcaaag ggtatgcaca tctggcgaca ccagaggaac tcgccaacgc caatcccaac      2820
     aaagtgtggt acataccgtt ggacgtcgtg gtgaatccat tgaaagggaa ggttcgctta      2880
     gtgtgggacg gccgtgcttc tgcgaatgga gtgtcgctga attcgcagct tatgaagggg      2940
     cctgacatgc tggcatcgct gcccgcggtg ataaaccggt tccgagaacg gcgaatcgga      3000
     tttggtgggg acatcaagga aatgtaccat caaattagga taagagagga ggacaagcaa      3060
     gctcagcgtt tcctgtttcg agcggcggag agcgagccac caaaagtcta cgtgatggac      3120
     gtagccacgt ttggctcaac gtgttcgccg tgctcagcgc agtttgtcaa aaataagaat      3180
     gcgatggagt acgcggtgga gtatccagaa gcggcagaag cgatcgtgaa aaagcactat      3240
     gtggatgatt actacgatag cgtcgatacg gaggaggagg ctattcgccg agccagtgag      3300
     gtgaagctgg ttcattcgaa aggtgggttc gaaatcagga actgggtttc gaattcggca      3360
     caagtgctcc gaagcctcgg agagcagaaa gtagaccaag cggttcattt caaccaggac      3420
     aaggagtcag gtagcgaaag agtgctcgga attatttgga actcgaagca agacacgttt      3480
     tcgttttcca ctgagcaccg tgatggtgta aaagagtatt tgcgaggtga caagatcccc      3540
     acaaagcgaa tcgttctaag ctgcgtgatg ggattcttcg atccgcttgg gttattagcc      3600
     ccattcaccg tccacgggaa gatattagtg caggagttgt ggcggaccgg ttgtgactgg      3660
     gacgaaaaaa tagaaggcga atgcttagaa agctggaagc ggtggatgag cctgctgtct      3720
     gctgtggaag cgctgcgtat acccagaagg tacttcggag atctctactc ttcttctctc      3780
     cgatcgatag agctgcacat cttcactgac gcaagcgagt gcgcatacgg agctgtggca      3840
     tattttcgag tggctgtggg tgatcacgtc cggtgttctc tggtgatggc cagatccaag      3900
     gtggcacctc tgaaacagca atccattcca agattggagc tgatggcggc ggtactaggt      3960
     gcgaagctgt tgacaacagt aaaaacaaat cattcgctta ctgttcatcg gcagtacctg      4020
     tggacggact cgcaaaccgt tctcagctgg attagatcgg atcagcacaa gtataaacag      4080
     gcagtagcgt tcaagatagg cgagattctg gaaagtacca gcgtagcgga ttggcggtgg      4140
     gtcccgaccc gatgtaatat tgcggacgtg ttgacgaagt ggggtgatgg tcctcccctg      4200
     gtgtcggaca gccagtggtt caggggacca gaatttctgt acggagcgga ggaaggatgg      4260
     cctgttccaa acataccaac ggcaaacacg gtcgaggaga tgaaggcgcg tttccttttc      4320
     cacgatgcaa ttcgcggtgg tccggtgatt gatgtggaag ttaccaatcg gtggaaaaag      4380
     ttggtgcgaa tcacagctgc agtgctacgg ttcgttggaa actgtcggcg aaaagctgga      4440
     ggagagccaa tttggacgat caaagcatcg gaggcgctag tgaagaagat aaaagcgggg      4500
     atgaaggtag ttcagcaacc gtttcagcag agtgagttcc agaaggcgga ggtggtgctg      4560
     tggaagcaag cgcagagcga aggattcccg gacgagctgc atgcattgaa gacggagcgc      4620
     aataagggaa tgcaggtaca tttactgaag cggaagagcg tgctgtatca gctgaagccg      4680
     atgttagatg aagatggggt actgcgagtc gatgggaggc tgcagcgagc cgagtacatg      4740
     ccgtacgaca agcggttccc gatcattttg ccgaggaatc acaggataac ggagttggtc      4800
     atccaatgtt accatgaagc gttcggacat gcgaataggg agaccgtttt caacgagttg      4860
     aggcagaagt tccacatccc aaaactgcga gcggtgatcc gaaaggtggt aatcgagtgt      4920
     gtgtggtgca aagtccatcg ttgtttaccg caagtcccgc tgatggcctc gttaccagtg      4980
     cagcggataa caccgagtct gcgccctttc agtgcggttg gggtagatta cctcggacca      5040
     gtgacggtaa cagtcggccg ccgaagcgag aaacggtggg tggcgctgtt tacctgctta      5100
     gcagttcgag cagtccacct cgaagtagta cacagcctgt cgacgcagtc gtgcctgatg      5160
     gcgattcgtc ggtttgtgtg caaacgtgga atgccgcagg agttcttctc ggataacggg      5220
     acaaacttcg taggagccag taaagaaatt ggtaggagcg tgaagcaggt agacgaggag      5280
     tgtgctgaag ccgtcatgtg ttccacgacg aagtggaatt tcaacccacc cgggaccccc      5340
     catatgggcg gtatctggga acggatggtg aggtcagtga aggaggcgtt gaaggcgttc      5400
     gacgatgggc ggaagttgac ggacgaagtg ctgcaaacga cccttgccga ggcggaggac      5460
     atgattaaca cccgtcctct tacctacatg tcgcaggagt cggatgagca ggaagcgatt      5520
     accccgaatc attttttgcg tggggcggtc gtcgccgaag acctgaaggt ggatggacca      5580
     ttccagctgg gagaagcgtt gcgggatgtt taccgtcgtt cacagtattt ggcggacaaa      5640
     atgtggcaac ggtggtataa agaatacctg ccggggatca accggcgaac gaaatggtgc      5700
     gaagagcgga ggccgttgaa tgtcggcgac ctcgtgtttg tagtggatgg gcagaatagg      5760
     aagagctgga tcagaggaat tgttgaaagg gtgatggtag cagaagatgg caagatacga      5820
     caggcggaag tgcgaaccag tagaggtgtg ttccggcgag cagcggccaa cctagcggtg      5880
     ctggaggtga gagataactg atagtaattc cggagtatcc agtaaacggc taccggattt      5940
     acgggctggg gag                                                         5953
//
ID   BEL-698_AA-LTR repbase;    DNA;    INV; 669 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-698_AA-I;
KW   BEL-698_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-669
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-669
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 285-285 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 669 BP; 248 A; 105 C; 132 G; 184 T; 0 other;
     tgttggatta catcggggca tcactgtact caaccatgca ttcacaatga aatgagaagc        60
     gagaagtgag aaaccgagta ggcaatatgc gcgccagttc atctctgtag aggagtatga       120
     acgcatcaat ttgaatcaat gtaaataaaa acaaaaacaa accaatgtgc attctgcaaa       180
     tagtaggtga taaattatcc agaaacaaat cgatttaaat tgtgatcccg tagcagaaaa       240
     tcacttaatt aggtgtcaac aagtggtgga gagcctgaac tagtgaccta gtaagtcaaa       300
     tacatgaaac attataaaat tatcatgcaa tctatatgat ttgatccgca taggctacat       360
     atacacgatt gttggaagga gaaaaacaaa gcgataatct ggaagtaaaa ttcgagtcaa       420
     ccgtaagtaa aacgacttag cgaagtgaga atttctcata tttcattagt ttattcgata       480
     agcaggatta gcgtttttgt tatcgccacg aatagttaaa atatatcgca agaggagcag       540
     gaaactattt cttgtaagtg taaggaaaat ttgttaaaac ctttaatcaa tggaatatat       600
     ctttttagtt tgagctgacc attaaaggct gctacgagaa aaatagtatt tctgtaccga       660
     ttccgaaca                                                               669
//
ID   BEL-699_AA-I repbase;    DNA;    INV; 5877 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-699_;
KW   BEL-699_AA-I; BEL-699_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5877
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5877
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..5875
FT                 /product="BEL-699_AA-I_1p"
FT                 /translation="MSTKSLDLTTTPCAECGQTSTRDEAMIACDGCDRWFH
FT                 IRCVGLTTAPKKDKKWFCSAATCQAVFQEYQKNKKASRTKKIAEEYDKLSS
FT                 KSADCLPMVPLPAVDEKMKAMEAERKRLEEEMDAELLLREKELEMKNALKL
FT                 RRRRMERALRERELEEDRLLREKEIEEREIELKKELQEKEAHLLRMKQMEK
FT                 AYRAKMFTVDQQLRKAEIGNNKKKREVSEEVRSERPSGTSKSQVVGKLTEA
FT                 NLKLFADREEESSEEEEESSSDSSDEESFVSKGDGTEIVSASQSGVQRLGP
FT                 SKAQLSARNGLTKKLPIFSGKPEEWPLFFGAYQASNEACGYTNVENLVRLQ
FT                 DSLKGAALEAVRGQLLLPQSVPRVIAKLRQLYGRPEQLLQSHLDKVRKLEP
FT                 PRADKLASFIPFGNAVEQLCEHLEAADLTLHLVNPILIQDLVSKLPDGEKR
FT                 EWVQYKKKKKVVTLRTFTDFVSRIVSDACEANVSFDYKPDIRSTGGASSRN
FT                 KPAKEKGALYSHSELNRADSNFSERRKQKACKVCQRDDHRLRFCQDFKDLP
FT                 YADRMKIVTKWKLCNICLNDHSGHCRFKIRCNVGDCNESHNPLIHPSATVV
FT                 GMSAHIRTCNSMMFRMIPIQIHCGESSLTVLAFLDEGASVTLMEKDLAERL
FT                 GLTGVKERLIINWTSEIYRVEKNSKRMNMWTSAIGVGNPEKFLLQTVHTVE
FT                 RLMLPHQRLNADELSAEYEHMRDLPITSYDGRPALLIGINNIHAFAPLEAR
FT                 IGATTEPIAVRCKLGWTVYGPRQTRTSSTGGFLGCHQRLSNEELHDILKSH
FT                 YALEESVVKVVKESAEDQRARSIMERTTKRIGDRYETGLLWKRDEVHLPDS
FT                 YPMALKRLKQLEKKLEKSPELYQNVRRQIAEYQEKGYAHLATAEELSCTVS
FT                 GKVWYLPLNVVVNPKKAGKVRLVWDAAASVQGVSLNSQLLKGPDLLVPLIS
FT                 VISRFREKKIAFGGDIREMYHQLRIIPEDKQAQRFLFRNNSDEPPRAYVMD
FT                 VATFGSTCSPASAQFIKNRNATEHAVQYPEAAAAIIDRHYVDDYFDSVNTV
FT                 EEAIERAKQVTYVHKQAGFEIRNWVSNSPAVLSALQEDRPSKQVVFHQDKQ
FT                 AAGERVLGVFWDIEVDMFAFSVTHRPEIQQYLFNGKRPTKRIVLSCVMGLF
FT                 DPLGLLSPFTVHGKVIIQQLWRSGCEWDEEIDERNWTSWKQWTDLLPAVEA
FT                 LRIPRCYLGDASSSSIESIELHIFTDASEHAYGCVAYLRLVYRGVVRCSLI
FT                 MSRAKVAPLKRQSIPRLELMAAVLGARMSRNIVEIHSLQIHRTVLWTDSRT
FT                 VLSWLQSDQHKFKQFVAFRVGEILELTRMGDWRWVPTKYNIADVLTKWGCG
FT                 PPLDNDSEWIHGPSMLYQSSEHWPAIEPAEETIEETRGVAFFHGVIEPQTV
FT                 SSWTRLVRVMATVLRFISNCQRKRVGLPIMTSQISTNHQSQLIRTEYSSER
FT                 KPLQQEELQKAEIVLWRQVQFDCYPNEMCVLTKNLQRTQAEKLEKIERSST
FT                 LYKRSPVLDEEGVLRVRSRLEKNEELPFDKRYPIILSGKHDITRKLILHYH
FT                 SKFGHANRETVFNELRQKFWIPKARSAIRQVTKECMWCKVNRCTPLVPMMA
FT                 PLPVQRTTPHMRPFSAVGVDYLGPVEVTVGRRKEKRWIAVFTCMAIRAVHL
FT                 DVVHSLSTQSCLMAIRRFACKRGAPEQIFSDNATCFRGANAAFRKKIQQIN
FT                 EECAEKVISAVTAWHFNPPGTPHMGGIWERMVRSVKEALRALDDGQKLTDE
FT                 ILSTSLAEAEDMINTRPLTYIPQEAADEEAITPNHFLRGTVKSADMLLEGS
FT                 VDFAKTLRDVYKRSEYLANKMWERWLKEYLPSLTHRTKWFDDGKPLCTGDL
FT                 VFVVDGKNRKNWTRGKVQKVIHGQDGRIRQADIKTADGKIHRRGVANLAVL
FT                 EIGSGNNGTSGGNTGCYGQE"
XX
SQ   Sequence 5877 BP; 1753 A; 1266 C; 1559 G; 1299 T; 0 other;
     atctcaaaaa tcaaataacg agatttcggt accctctatc acgatgagca ctaaatccct        60
     ggatctaaca actacccctt gcgcggaatg tgggcaaaca tcaactcggg atgaagcgat       120
     gattgcctgt gatgggtgcg atcgctggtt tcacattcgc tgcgtgggat tgacgacggc       180
     accaaaaaag gataaaaagt ggttctgtag tgcggccacc tgccaggcag tattccagga       240
     gtaccagaaa aataagaagg catctcgtac caagaaaatt gcggaggaat atgacaagtt       300
     gagttcgaaa tcagccgact gtctgccgat ggtcccgttg ccggccgtgg acgagaaaat       360
     gaaagcgatg gaagcggaaa ggaaacgctt agaagaagaa atggacgcgg aattgctgct       420
     ccgtgagaag gagctggaaa tgaagaacgc actgaaacta agacgaaggc ggatggagcg       480
     agcactgcga gaaagagagc ttgaggagga tcgactacta cgcgagaagg agatcgaaga       540
     aagggaaatc gaacttaaga aagagctgca ggagaaggaa gcgcatctgc tccgaatgaa       600
     gcagatggag aaagcatatc gcgcgaaaat gttcaccgtt gaccaacaac tgagaaaagc       660
     ggaaatcggc aacaacaaga agaagaggga agtttcggaa gaagtcagat cagaaaggcc       720
     atctgggaca tcgaaatcac aggttgtcgg taaactgacg gaagcaaatt tgaagctctt       780
     tgcggatcgt gaagaggaaa gcagcgagga ggaagaagag agtagctctg acagcagtga       840
     tgaagaatcg ttcgttagta aaggggacgg tacggagatt gttagtgcgt ctcaaagtgg       900
     cgtgcagcgt cttgggccga gcaaggcaca attgtccgct agaaatgggt taaccaagaa       960
     gctccctatt ttctcaggga aaccagaaga gtggcccttg tttttcggag cgtatcaagc      1020
     gtccaacgaa gcttgcggct atacaaatgt tgaaaatctg gtgagactcc aggatagctt      1080
     aaagggtgca gcactggagg cggtacgtgg ccaactacta cttccccaat cggttcccag      1140
     ggtgattgca aagctccgtc agctatacgg ccgacccgaa caactactcc aaagccacct      1200
     agataaggtc cgcaagcttg aaccaccaag agccgataaa ctagccagtt tcattccctt      1260
     tggaaacgcc gtggaacaac tttgtgagca tctagaagca gcagatctta cactacattt      1320
     agtgaatccg attctcatac aagacctggt tagcaaactt ccggatggag aaaaacgaga      1380
     atgggtgcag tacaagaaaa agaagaaggt agtgacgttg cgaacgttca cggatttcgt      1440
     atccagaatc gtttcagatg cgtgtgaggc gaatgttagt ttcgactata agccagatat      1500
     cagatccact ggtggggcaa gtagtagaaa taaaccggcg aaggagaaag gggcattgta      1560
     cagccatagc gagctgaacc gagcggattc taacttttcg gagcgcagaa agcagaaggc      1620
     atgcaaagtg tgtcagcgag acgaccatcg tctacgattc tgccaggatt ttaaggatct      1680
     accctatgca gatcggatga agatagtgac caaatggaag ttgtgcaata tctgcctcaa      1740
     cgatcacagt ggacattgcc gttttaagat tcgatgcaat gtgggtgact gcaatgaatc      1800
     acataatcca cttatccatc cgtcagcgac tgttgttggt atgagtgcac atatcagaac      1860
     atgcaactcg atgatgtttc ggatgattcc tattcagatt cattgcggag aaagctcgtt      1920
     gacagtactt gccttcttgg atgaaggtgc ttctgtaacg ctgatggaaa aagacttggc      1980
     agaaagatta ggtttgactg gagtgaaaga gagactcatc atcaactgga catctgaaat      2040
     ctatcgtgta gagaagaact caaagcggat gaacatgtgg acctcggcga ttggggtggg      2100
     aaaccctgag aagtttttgc tgcagactgt acacacagtc gagagattaa tgttgccaca      2160
     tcaaaggctg aacgctgacg agctgtcggc ggagtacgag cacatgcgag atctaccgat      2220
     tacatcgtat gacggtcgac cagctctact aattggaata aacaatattc atgcatttgc      2280
     tccactcgaa gcgcggatcg gagcgacaac ggagccaatt gctgttcgtt gcaaactcgg      2340
     ttggactgtt tacggaccac gccaaacacg cacatcgtcg actggtggtt ttctcggttg      2400
     tcaccaaagg ttatcgaacg aagaactcca tgacatcctg aagagtcact atgcactgga      2460
     agaatcagtg gtgaaagtgg taaaagaatc agctgaggat caacgagcac gttcgataat      2520
     ggaacgaacc acaaaacgaa taggagatcg ctatgagacg ggattgctgt ggaagaggga      2580
     cgaggtgcac cttccggaca gttatcccat ggcgttgaag cgattgaagc aactggaaaa      2640
     gaagctggag aaatcaccgg agttgtacca aaacgttcga cgtcagatag cagaatacca      2700
     agagaaaggc tatgcacacc ttgcaactgc agaagagctc tcttgtaccg taagcggtaa      2760
     agtttggtac cttccgttga atgtggtcgt aaatcccaaa aaggctggta aggtccgtct      2820
     agtatgggac gcggcggctt ccgtacaagg cgtttcactt aattcgcaac tgttgaaggg      2880
     acccgatcta ctggtaccac taatatcagt gatcagccgc tttcgcgaga aaaaaatcgc      2940
     cttcggtggg gacatacggg agatgtacca ccaattgaga ataattcccg aggacaagca      3000
     agcccaacgt tttctcttcc gaaataatag cgatgaaccg ccgagggcat acgtgatgga      3060
     cgttgccaca tttggttcta cgtgttcccc ggcttcggcg cagtttatca agaaccggaa      3120
     tgctaccgaa catgcagtcc aatatccaga agcagcggcg gccataatcg atcgacacta      3180
     cgttgatgat tatttcgaca gcgtcaacac tgtcgaagag gcgatagagc gagccaagca      3240
     ggtaacttac gttcataaac aagccgggtt tgaaatccgc aactgggtat cgaattcgcc      3300
     agcagttctt tcagctctac aagaagacag accttctaag caggtggttt tccaccaaga      3360
     taaacaagca gccggagagc gtgttctcgg agtattctgg gacatagaag tggatatgtt      3420
     cgccttctcc gttacacacc gtccagagat ccaacagtac ttgttcaatg gcaagcgacc      3480
     aacaaaacgc atcgtattga gttgtgtaat ggggcttttt gatcccttgg gtctactatc      3540
     accgttcacg gtccatggca aagtgatcat tcaacaactc tggcgaagtg gctgtgaatg      3600
     ggatgaagaa attgacgaac gaaactggac ctcgtggaaa cagtggacag acctcttgcc      3660
     cgcggtagaa gctctacgaa ttccacgatg ttatctgggg gacgcatcgt cttcatcaat      3720
     cgagtcaatc gagttgcata ttttcaccga tgcgagtgaa cacgcttatg gatgcgtagc      3780
     atacctgcga ttggtataca gaggagtggt aaggtgtagc ttgatcatgt cccgagcaaa      3840
     ggtagctccg ctgaagcgac aatccatacc acggcttgaa cttatggccg ctgttctcgg      3900
     ggcccgtatg agtcgaaata tcgttgaaat acattcactg caaattcatc gcaccgtcct      3960
     gtggacggat tcgcgaaccg tactgtcatg gctgcagtcc gaccagcata aattcaagca      4020
     attcgtcgcg ttcagagtcg gcgaaatttt ggaactaact cgaatgggag actggagatg      4080
     ggtaccgacg aaatacaaca ttgcagatgt gctcaccaaa tggggttgtg gacctccgtt      4140
     agacaacgac tcggaatgga tccacggtcc atcgatgctg taccaatcga gtgaacactg      4200
     gcctgctatc gaaccggctg aagaaactat agaagaaaca agaggagttg cgttcttcca      4260
     tggggtgatt gaacctcaaa ccgtttccag ttggacgagg ctggtgcgag tgatggcaac      4320
     tgtattgcgg tttatatcta attgtcagcg taagagggtt gggttgccta tcatgacttc      4380
     tcaaatcagc acaaatcacc aaagtcagct aattagaact gagtattctt cggaaaggaa      4440
     gccacttcaa caagaagagc ttcagaaagc agaaatcgtt ctttggagac aggtacagtt      4500
     cgactgttac ccaaacgaaa tgtgtgtatt aacaaaaaat ctgcaacgaa ctcaggccga      4560
     aaaattggag aaaattgaaa gatccagcac gctgtataag cgatcacctg tgttagatga      4620
     agaaggagtc ctgagagtcc gaagccgttt ggaaaaaaac gaagagttac cctttgacaa      4680
     gcgttatccg atcatccttt ctggcaagca cgatataact agaaagttga tactgcatta      4740
     tcacagcaag ttcggccatg caaacagaga aaccgtgttc aacgaactgc ggcagaaatt      4800
     ttggattccg aaggcccgtt ctgctattcg gcaggtaacg aaagagtgca tgtggtgcaa      4860
     agttaatcgt tgtacacctt tagtcccgat gatggcgcca ttgcctgtcc aacgcaccac      4920
     ccctcacatg cgacccttca gtgcagtagg tgttgattat ctagggccag tcgaagtcac      4980
     cgtaggtcgt agaaaagaaa agagatggat tgcggtattc acgtgtatgg ccattagagc      5040
     cgttcatctc gatgtagtcc acagtttaag tacacaatcc tgcttaatgg ctataagacg      5100
     attcgcttgc aagcgtggag ctcccgagca aattttctca gataacgcta cctgttttcg      5160
     aggagctaac gcggcattta ggaagaagat tcaacagatc aatgaagaat gcgcagaaaa      5220
     ggtgatatcg gccgttacag catggcactt taatcctcct ggtacaccgc acatgggtgg      5280
     catctgggag cgaatggtgc gatccgtcaa ggaagcccta cgagcattgg acgacggaca      5340
     aaagttaacg gatgagatct tgtcaacgag tttagctgaa gcagaggaca tgatcaatac      5400
     tcgacctcta acttacatcc cacaggaagc ggccgacgaa gaagcgataa caccgaacca      5460
     cttcttacgt gggacggtga aaagtgcaga tatgttgctt gaaggttccg tagactttgc      5520
     taagaccctg cgcgacgtgt acaagcgatc ggagtacttg gccaacaaga tgtgggaacg      5580
     ttggttgaag gaatatctgc catcgttgac acatcgaacc aaatggttcg atgacggaaa      5640
     gccgctctgc accggagatc tagtattcgt ggttgatgga aagaacagga agaactggac      5700
     acgaggaaaa gtccaaaaag tgattcatgg acaggatgga agaattcgtc aagctgacat      5760
     aaagactgca gatggcaaga ttcaccgtcg aggcgttgca aatctagcgg tgttggagat      5820
     tggttctggt aacaacggaa cttccggcgg aaataccgga tgttacgggc aggagat         5877
//
ID   BEL-699_AA-LTR repbase;    DNA;    INV; 606 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-699_AA-I;
KW   BEL-699_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-606
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-606
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 296-296 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 606 BP; 234 A; 83 C; 133 G; 156 T; 0 other;
     tgttaacacc gctgggcagt agacggcggt ttaattgccg aatcctggaa atgacagctg        60
     acaaggggaa tacggaagca atcggcaaga atgggagaaa ggaaaatgaa tatcaaaaca       120
     agtaaacgca tattcaatcg tgttttgtaa tctcacaaat ttattatata attacgtgta       180
     agcaaacagg aggtggcaat aatttgctcg ataattgaat tattaacctg taagtaaata       240
     aaataattgg aatcataatg aaagttatct taaatagcaa atacttacca cagtttgtac       300
     cacacgcgaa ccgaagtata ggagcacaac cgttacgttg ctgtgcatcg tacggatttg       360
     taagtaacct gaaaagagaa aacgaaactg ttattaatga attgttgaaa tagcagggac       420
     aagaaaaagg caaaggaagg agtaaaagga ttcaggaaga agtgggattt gtaaggaagg       480
     aggaaactat ttgagtaagt agattgatga gcatttctca ttgtaacatt atgataacta       540
     aataaatcct tttagttttt gagctgcttc gaaaagctgc tataaaataa atagagtgcc       600
     caaaca                                                                  606
//
ID   BEL-69_AA-I repbase;    DNA;    INV; 6198 BP.
XX
AC   supercont1.21;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_AA_;
KW   BEL-69_AA-LTR; BEL-69_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6198
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.21; Positions 3460765 3466962.
XX
CC   'TAAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..5178
FT                 /product="BEL-69_AA-I_1p"
FT                 /translation="MDGHHSRSGYTCKACHRPDSSSAHMIICDQCRLWEHF
FT                 SCTGESESVPSRPFICRQCRGENAAGSTISSRLRSQAKRAPSGNVSGGKPA
FT                 SNIGSKISSVASSSRSSIVKARLELIEEEERMKQKELEEEEAFKKLEHEEA
FT                 QRQLEEKKKRMEEQRKLAEEESLLRQSKLVAEKARLLKQQSIRRESLEKKN
FT                 EVILQISERGSVVESATSSREKVASWLTANMPNGKSDRNTLGNHGNLQYDS
FT                 VPAAPHSVASLIINVPSRVTEIPSELPPAPQVAETHNSSPRQRFPGPTGIP
FT                 HVSGRIGYHVRSTTIREPFQQFVTSSRPLQTNPLPVHPYPPSIHSSRGHSD
FT                 GGEHTPQIFRRQEPSWTTPGLCDAIHDPPLTRRSVEPNLFSHESRPEQFRH
FT                 LGGPTVNTAMRANNHEPIGQAGVLSTQQIAARQVVGKDLPHFGGNPADWPM
FT                 FISSFEQSTVACGYSNAENLARLQRCLTGHAREAVRSRLLLPANVPQVMNT
FT                 LRTLYGRPELLIRSLHEKIRRTPGPRHDRPESILEFGLAVQNFVDHLQAAE
FT                 QEEHLANPMLMQELVEKLPGPMRMDWATFKNLQPRATVITFGEFMGKLVSA
FT                 ASEVSFELPGFQKATSSEKLQRPREKARIQAHSTADIPAPKPAAENTRKSP
FT                 KSCRICDREGHRVAECYKFKQLNLEERLKEVQDKGLCRTCLNNHGKWPCKS
FT                 WQGCGVSGCRLKHHTLLHSSSSSTPTTHSVNVSSRKFPMDDDQTLFRVLPV
FT                 VLYANGKSVTVFAFIDEGSQITMLEEKVANELGLSGPRKPLTLQWTGNVKR
FT                 NELRSEEVSLEISGKRNDKRYDLHQARTVSCLLLPAQRFNYREMTTRFPHL
FT                 KGLPIEDYDLAQPKLLIGLDNLRLGVPLRLREGGPFDPIAAKCRLGWGVYG
FT                 RTYAKPIPRAIVNFHTAAAASSDALLNEQLRDFFTLENNGIVGPNVMLESD
FT                 EDKRARKLLEDTTRRTATGFETGLLWKFDDPEFPETYPMAIRRMKALEKKL
FT                 GCNSTMMQRVGEQISDYERKGYIRKVSESEVTAIDPQKTWFLPLGVVINPK
FT                 KPGKIRLIWDAAAKVAGVSFNSFLLKGPDLLTPLPRVLSGFRLFPVAVSGD
FT                 IREMFLQIKLQASDRNSQMFVFRRTPEEPVQVYAIEVTMFGSTCSPSSAQF
FT                 VKNANAEQYAQHYPRAAAAIKEHHYVDDYLDSFRTIDEAVRVVSDVKYVHS
FT                 MGGFEIRNFLSNEDEVLRRTGEIEPDSTKDFALVRADAAESVLGMRWKPAD
FT                 DVFTYTFSMREDLKLILDENHIPTKREVLKVIMSLFDPLGFVAFFLVHGKV
FT                 LMQDVWASGIDWDQKINEQLFTRWRQWVAFFPQLDSLQIPRCYFNSPFPDN
FT                 FDRLELHVFVDASDSAFACVAYYRIETENGIHVALVCAKTKVAPLKVLSIP
FT                 RLELNAAVLGVRILEAVEGFHTYSISRRVLWSDSTTVLAWIRSEHRRYNKF
FT                 VAVRIGEILTSTDVREWRWVPSRSNAADLATKWKNGPDLTSMNPWFAGPPF
FT                 LHRPEEFWPQQTVVTTTCEELRPIHIHSTSPPLIDTTRFSNWTRLQRTMAF
FT                 VIRFVDNLRRKRSGASMQQDVLVQDELRRAETALWKIAQAESFPEEIEILS
FT                 ETEGSPEVRHRYAAKSSPIYKNCPFLDDHGVLRQRVNVAESMPQLLYQWNS
FT                 STQQYFRGNIRSRSCLWIGIIGVSAMPITRPSPTKFVNASKFPSYVH"
XX
SQ   Sequence 6198 BP; 1660 A; 1518 C; 1610 G; 1410 T; 0 other;
     ttctaaaaga atttttgtac gtgggtgaag atggacggac atcacagccg atcgggatat        60
     acatgcaagg catgccaccg cccagactcg tcaagtgctc atatgatcat ctgcgatcaa       120
     tgccgcctgt gggagcactt cagctgtacc ggcgagagcg agtccgtgcc gagtagaccg       180
     tttatctgca ggcagtgccg gggagagaat gcagcaggat cgactatctc ttctcgactg       240
     cgatcacaag cgaaacgagc gccgtcaggt aacgtgtcag ggggcaaacc tgcttcaaat       300
     attggcagca agatttcgtc ggtagcatcg agtagccggt cgtcgatcgt gaaggcgcgg       360
     ctggagctaa tcgaggaaga agagaggatg aaacagaaag agcttgaaga agaggaagcg       420
     tttaagaaac tggaacatga agaggcccag agacaactgg aagaaaagaa gaagcgaatg       480
     gaagagcaaa ggaagttggc tgaggaagaa tcgcttctaa ggcagagcaa acttgtggca       540
     gagaaagcac gtctgctcaa acagcagtcg atacgccgtg aatcactgga gaagaaaaat       600
     gaagtcattc tgcagatttc cgaacgtggc agtgtggtgg aatcggcaac aagttcccga       660
     gaaaaggtcg cgagttggtt gacggctaat atgccgaacg ggaagtccga caggaataca       720
     ttgggaaatc atggcaacct ccaatatgat tcggttcctg cggccccgca tagtgtagcg       780
     tcgttgatca tcaatgtacc ttcaagagta acggagatac cgtcagaatt accacctgca       840
     ccccaagtgg cagaaactca taattcttct ccacgtcagc gtttccctgg gcccactggc       900
     attcctcatg tgagtggtag gatcgggtat cacgttcgat ctactacaat ccgtgaaccg       960
     ttccagcagt tcgtaactag ttcaaggcct ttgcaaacaa atcctttgcc agttcaccca      1020
     tatccaccgt cgattcattc atctcgtgga cacagtgatg ggggtgaaca cactccacag      1080
     atatttcgcc gacaagagcc ttcttggacc acacctggtc tgtgcgacgc aattcacgat      1140
     ccacctctaa cacgtcgatc cgtagagcca aatcttttct ctcacgaatc tcgtccggag      1200
     caatttcgtc acttgggtgg accaacggtg aatacagcga tgagagcgaa caatcacgaa      1260
     ccaatcgggc aagcaggggt tctcagcacg cagcaaatag ccgcgagaca agttgtcggc      1320
     aaagatttac ctcacttcgg cggcaatcct gctgattggc cgatgttcat cagcagtttt      1380
     gagcagtcaa ccgttgcgtg tgggtattca aatgccgaaa accttgcgcg actacaaaga      1440
     tgccttaccg gacacgctcg agaagcggtg cgaagcagac tattgcttcc ggccaacgtt      1500
     ccacaagtga tgaacacgct ccgcacgctt tacggtcgtc ccgaacttct tattcggtca      1560
     ttacatgaaa agattcggcg gactccagga cctaggcatg accgcccgga atccattctg      1620
     gaatttggat tggcggtgca aaatttcgtc gaccatcttc aggcggctga acaagaagaa      1680
     catctggcca acccaatgct catgcaggag ctggtcgaga aactgccagg ccctatgagg      1740
     atggactggg ccaccttcaa aaatcttcag cccagggcta ccgtcataac gttcggtgaa      1800
     ttcatgggca agctggtcag cgcggccagt gaagtgagtt tcgaacttcc agggtttcag      1860
     aaagcgacga gcagcgaaaa attacaacgt cctcgtgaga aagctagaat tcaagctcat      1920
     tcaactgcag atattccggc tccaaaacca gcggcagaaa atactcgcaa atcaccaaaa      1980
     tcgtgtcgaa tatgtgatcg tgaaggccac cgagttgctg aatgctacaa gttcaaacag      2040
     ctaaacctag aggaacgatt gaaggaggta caggataaag gtctctgccg aacgtgcctg      2100
     aacaaccacg gcaaatggcc gtgtaagtct tggcagggtt gcggagtctc gggatgccga      2160
     ctcaaacatc acacgctttt gcactcgtcg tcttcctcta cgccaacaac ccactccgtg      2220
     aatgtttcgt cgaggaaatt tccaatggac gacgatcaaa cgctgttcag agtactgcct      2280
     gtagtattgt acgcaaacgg caagagtgta acggtattcg cttttatcga cgagggttcg      2340
     cagattacaa tgctagagga gaaagtggca aacgaacttg gtctctccgg gcctaggaaa      2400
     ccgttgactc tacaatggac tgggaacgtg aagcgcaatg aactgcgatc ggaagaggtg      2460
     agcctggaaa tatcgggtaa acgaaacgac aaacgttatg atcttcacca agcacgcacc      2520
     gtgagttgtt tgcttcttcc agcgcagcgt ttcaactata gagaaatgac aacacgtttc      2580
     ccacatctca aggggcttcc gatcgaagac tatgatctag cacaacccaa attacttatc      2640
     gggctagaca atcttcgcct cggcgttcct ttgaggctac gagagggagg gccatttgac      2700
     cctatagccg ccaaatgtcg actaggttgg ggagtctatg gccgcacata tgcgaaaccc      2760
     attcctaggg cgattgtgaa cttccacaca gcggccgcgg cgagttcaga tgctctgcta      2820
     aatgaacagc tacgcgattt tttcacgttg gagaacaatg ggatcgtggg cccgaacgtg      2880
     atgctcgaat cggacgagga caagagagcg agaaaattgt tggaagatac cacaaggcga      2940
     acagcaaccg gattcgaaac cggactcctc tggaagttcg atgatccgga atttccagaa      3000
     acctatccga tggccattcg acggatgaag gctctcgaaa agaagttggg ttgtaactca      3060
     acaatgatgc agcgagttgg tgagcaaatc agcgactatg agcgaaaggg ttatattcgc      3120
     aaagtcagcg aatcagaggt gacagctatc gatccacaga aaacttggtt tctgccactt      3180
     ggagtggtca tcaaccccaa gaaaccgggt aaaattcggc tgatctggga tgcagcagca      3240
     aaagtcgctg gggtatcgtt caattcgttc ctgttgaaag gtcccgacct cctcactccg      3300
     ctcccgagag tacttagcgg attccgtcta tttccggtgg ccgtttctgg agacattagg      3360
     gagatgtttc tccaaatcaa gctacaagct agcgatagga attcacagat gtttgtgttt      3420
     cgtcgcactc ccgaagaacc tgtacaggtg tatgcgatcg aagtcacaat gttcggttcc      3480
     acctgctctc cttcttccgc ccagttcgta aagaatgcca atgccgaaca gtacgcgcag      3540
     cattatccac gagcagcagc cgcaataaag gagcaccatt atgtggatga ctacctggac      3600
     agtttcagga cgattgacga agcagttcgg gtggtgagcg atgtcaagta cgtccactct      3660
     atgggtggat tcgagattcg taacttttta tcgaacgaag acgaagttct gcggcgaact      3720
     ggggagatcg aaccagattc taccaaagac ttcgctcttg tacgtgcaga tgcagccgaa      3780
     tcggttctcg gaatgagatg gaaaccagcg gacgatgttt tcacgtacac cttttcgatg      3840
     cgtgaggatt tgaagttaat tctcgatgag aatcacattc caacgaaacg cgaagtcttg      3900
     aaggtgatta tgagtctctt tgatcctttg ggattcgtgg cgttcttctt agtccacggg      3960
     aaagtactta tgcaggacgt ctgggcctcg gggattgatt gggatcaaaa aatcaacgag      4020
     cagctcttca ctcgttggcg acaatgggta gccttcttcc cgcaactaga ctcattgcaa      4080
     atcccccgct gctacttcaa ctccccgttt ccagataatt tcgatcggtt ggagttacac      4140
     gttttcgtcg atgccagcga ttctgccttc gcctgcgtag cttattaccg aatcgaaact      4200
     gaaaacggca ttcatgttgc gctggtttgc gcaaaaacta aggtggcacc tttaaaggtc      4260
     ttatcaatcc ctcgccttga attgaatgcg gccgtactag gagtccgaat tttggaggct      4320
     gtcgaaggat tccacactta ctctatcagc cgccgagttc tatggagcga ctctaccacc      4380
     gttttagcct ggattcgatc agaacatcgt cggtataaca aatttgtggc agtccgtatc      4440
     ggtgagatcc ttacatcaac tgacgtacgg gagtggagat gggttccatc tagatcgaat      4500
     gcggcagacc tcgctacgaa atggaaaaat gggcctgatc tcacctctat gaatccatgg      4560
     ttcgcgggtc caccattcct gcatcggccg gaagaattct ggcctcaaca aacggtagtc      4620
     acaacaacgt gcgaagaact gcgaccaatc cacatccatt ctaccagccc accattaatc      4680
     gacaccacac ggtttagcaa ctggactcgt ctacagagaa ccatggcgtt tgtgattcga      4740
     ttcgtggata acctacgccg taaacgcagc ggtgcttcga tgcaacagga tgttctcgtc      4800
     caagatgaat tgaggcgtgc tgagacagcc ctttggaaga ttgcacaggc tgaatcgttt      4860
     ccagaggaaa tcgaaatctt gtcagaaacg gaaggttcac cagaggtccg tcatcgatat      4920
     gctgctaaaa gcagtccaat ttacaaaaac tgtccatttc tcgatgatca cggtgtgctt      4980
     cgtcaacgtg tcaacgtggc agaatcgatg cctcaacttt tgtaccaatg gaattcaagt      5040
     acccagcaat acttccgagg caacatcaga tcacgttcct gcttgtggat tggtatcatc      5100
     ggcgtttccg ccatgccaat cacgagaccg tcaccaacga aattcgtcaa cgcttcgaaa      5160
     tttccaagct acgtgcacta gtcgagaagg tcacaaaggg ctgcgtggtg tgccggatta      5220
     agaaagccct accgagtcct ccagcgatcc gtcgacaacc gttcatccga ccatttacct      5280
     acgtaggagt agattatttc ggtccaatac tggtcaaagt tggaagaagt caagtgaaaa      5340
     ggtgggtggc tttattcacc tgccttacag ttcgcgcaat acacttggaa gtagtgtaca      5400
     gcctctccac tgagagttgc tggatctcca gccgaattcc attcgggata atggaacctg      5460
     ctttcaagga gcgagcaacg aactgcaacg agagacggaa aagcggaatg ccgctttagc      5520
     taccacgttt acaacaacca agacccggtg gtgtttcata ccaccagcgg ctccccatat      5580
     gggaggcgca tgggaacgtc tagttcgttc cgtcaaggta gcaataggat ctatagcaga      5640
     cagcccacgt agaccagatg acgaagttct ggagaccatc tgctcgaagc cgaggctctg      5700
     ataaacgcgc gtccgctcac ctatattcca ctcgagtcgg cggatgagga agctcttaca      5760
     cccaaccact ttttgctggg ttcctcaaat ggtgacaagt tccttccaaa tgaacccgtt      5820
     gagtcaccgg ccgtgctacg gagcagttgg agacttgcgc aggccataac gcaacgcttt      5880
     tggacaaggt ggctgaagga atatcttcca gtaatcacgc ggagatcgaa gtggtttgga      5940
     gaggtccgag atatagctgt tggagatttg gtattggtgg tgaatgggac agccaaggat      6000
     caatggacga gaggacgtgt tgaagctgtg atgcctggac gtgatggacg tgtccgccaa      6060
     gcccttgtcc ggacggcttc cggagttcat cgacgaccag cagtaaagtt ggcggttctt      6120
     gacgtggttg aacgaagtga acccagattg gagactcccg aagagtcggg tcgtaactag      6180
     tgttcacggg agggggga                                                    6198
//
ID   BEL-69_AA-LTR repbase;    DNA;    INV; 697 BP.
XX
AC   supercont1.21;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_AA_;
KW   BEL-69_AA-I; BEL-69_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-697
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.21; Positions 3460068 3460764.
XX
SQ   Sequence 697 BP; 239 A; 130 C; 122 G; 206 T; 0 other;
     tgtcacgtca cccccctgct acaaatctac tgtggtcgat tcactgtggc cgttcaagtg        60
     gtcaactaag cttgaccaat acaacggtcg attaaccgag cgtaaaagag aggataaagg       120
     cgcttttcga tgtatgtagg agttcagaac caaaacaaaa ttggaacaac tctacgaagt       180
     catgcaaatg agcatttcaa aagttttatc tactattctg cgcatttttc cgttaattta       240
     aagctaaaag gtagtgagga accaaaatct aaactctagt ttaacttagt tctagttcgt       300
     gcaaaattgg cttaaaatct atagtaccga ggtaagggaa atacttctta aaagtacgtt       360
     gaatttataa cctaaaatga attcgttata tatagaaacc gctaatcatc taccaagtcc       420
     tagacgaggt tgagcaattg aaaatcctaa ctagctgtaa gtattattgt ttttggttcg       480
     aatttgataa ttgagagttt ctaatcctta gtatatctac aaaattatta agcccgagtc       540
     accgtggtaa gacccaaccg tctgaaggtc accaaaaatt gtaagtgatt gcaaaaatat       600
     tgaattcatt attctaatga aataaaattt agcttttagc ttacccacat acaaaacggt       660
     ttgctcaaaa gagtttggga aacttccccc cacaaca                                697
//
ID   BEL-69_CQ-I repbase;    DNA;    INV; 6386 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_CQ_;
KW   BEL-69_CQ-LTR; BEL-69_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6386
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5433-5993] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3909..6041
FT                 /product="BEL-69_CQ-I_2p"
FT                 /translation="MDKDCGFERLLGMVWVPDEDVFTFRLNFRRDHAKLLT
FT                 GEEIPTKQQALSIVMSIYDPTGFLAAFIVHGKIILQDVWRSRVDWKQKIPD
FT                 ELFQRWRQWIALLPKIEDLKIPRCYFPGYHPDSLRSLELHVFVDASESAYS
FT                 AVAHFRLVDGKRVRCAFVSSKTKVAPLEPLSIPRLEANAGVLGVRLRKSIV
FT                 TGHSLPITRTRFWTDSKTVLQWIRSMDLRRYRPYVAFRVNEILSMSAVEEW
FT                 GYCPSRLNVADLATKWGKQGPPLDIASPFYQSQEFVYDDPSEWPEPCDEMV
FT                 ELAPEELRSAFVFAHFVLKPLVKWERFSKWERLLRAMGYVHRFIDRKLNRA
FT                 KKPWTTDLTREELQQAERSLCRIAQSDEYPDEVATLNQNQRVPAEQRRPLE
FT                 KSSNIVKLCPMLDEAGVLRVKGRIQAADFVPYDARHPVILPRDHPVTALLL
FT                 DYYHRRFQHANNETVVNEVRQKFSISKLRVQVRLTQNNCEWCKVYNSAPIA
FT                 PQMAPLPRARLSPFLRPFTFTGVDYFGPYLIKVGRSVAKRWIALFTCLTIR
FT                 AVHLEVVAGLSTDSFKKAMRRFIARRGAPQEIYSDRGTNFIGASGELAKEI
FT                 VLNINQELSSTFTDAHTQWRFNPPAAPHMGGSWERMVRSVKVALGAIPTQR
FT                 KLDEESLVTMLTEAEYMVNSRPLTFIPLENADQESLTPNHFLLMSSSGVQQ
FT                 PAKDPVSEGAA"
XX
SQ   Sequence 6386 BP; 1609 A; 1654 C; 1736 G; 1285 T; 102 other;
     gaaaactcga agatttaccg caaatcatac atttgatcgg aataaatcat gaatcagcgt        60
     ccmaacaccc gtcaaactcg ttcgcaaacg agagccgctc agcaattaca gcagcaagca       120
     ggaattaacc tccaaagtgt tgacgctgca ggcgagcccg cagctcggcc cgcagtcttt       180
     gaagcctcaa cagttgacat cgagggcgga gatgatattg attgtgggag ttgcgtccgt       240
     ccgaacaacg ccgagatgta tatggtgcaa tgcggscagt gccaaatcta ctaccacttt       300
     tcgtgcgcag gagtcacaat agatacggtg tacctgaagc cgttcgtttg caagacctgc       360
     gcccagttac gcccggcaag aaatacccca tcagtgcgtt ctgcatcgag tgtgagcgtg       420
     cgcagctcgc agatttccgc ggaactgcgg agagtagaag aagagttaca actagaggat       480
     cagatgtcac kgcttttaga acgcaagaaa cakctgatgg ccaaaagaca tgaactgttg       540
     agccagaagg gagacgccaa gtcccgtagc agcggtcgtw gtagccggac gaccacggac       600
     agagtccaag attggataat ggaccaagga atggccgaga attccggcca tggcatcgac       660
     aaaccgatga ccgaccctac cgagtctatt aacmaactgt atggaaatcc ggtgaaccag       720
     cttaacgcag ggcgaacttc aacgcccctg accaaggaac tcggcgccgt cccgaaagat       780
     cgcaaacagt catcggaggc tgctttcggc gtttctaatt ttccgaaact acccgggata       840
     ccgccagtgg acaatcaatc tgtwctgggt accaagaaaa cgctcctgga taaaccattc       900
     ccgaaaggtg ctattggtaa actcttttta cctgcgtcgg cttacgaaac ctggcgaagt       960
     gaaacgaaac ggtacgagaa acaggagctt atcaagcaga aaaaccgtgc agcagctgaa      1020
     aacgaatacc aacagaagtg ttttgaggag gtccagcagg agctgaacga gcagattgag      1080
     gcgttaaaac ttcagcagca cgggaacgag agcgatcaga atcctccggg aaattggtac      1140
     gaccgtgaac tgttgaagct gcagaaatcg cgtgacgaca acgccacgaa acaatttccw      1200
     ccgcccggtg cccacaacag cttgccgtct atttcgggaa ggagtggtga cccgatagat      1260
     ctcaacatca gaagcccctg cggcggacgc tcaagattat ctgtgtcaac tgcggaacca      1320
     cctagcttct ctacgcggcg atcgaatccg gtgccaccaa atctgtcacg aacggcgtct      1380
     ccgccgcccg cgcctgtgat cacagctcaa cagctggctg cgcgtcaagt agtgtccaaa      1440
     gacttgccag acttcttcgg ggatccggca gagtggccac tgttcatcag tagatacaac      1500
     cactcaactc aaacttgtgg ctttactgat tccgagaatc tgctccgtct ggaccgggca      1560
     atcaagggtt atgcgagaga gatggtaagc agtttgttat tggatccgtc aacggtacct      1620
     gagctgttgt cgtcgttgcg actcctttac ggtcgaccgg aacagatagt gcacaacctg      1680
     atcgctaaag ttcgagctac accggccccg aaagcaaaca aactcgattc tctggtaacg      1740
     tttggattgg ttgtacagaa cctgtgcgga cacctgagag ctatcggcat ggaaaaacac      1800
     ctttccaatc cgacccttct gtgcgagctg gttgaaaagc tccccgacaa cgtaaagttt      1860
     aactgggcct tgtatcagca tcagctgccg gaagttgact tgaatgcctt tggtatttac      1920
     atgtcacaaa ttgcgacggc tacgagcgga gttacactct tgtctacacc ccctagagct      1980
     gtacgagacg accgtccaaa atcgaaagaa aaggcgttcg tcaacgcgca cgccgaacaa      2040
     gaaggcgagw cmagcgacgg tgagggcaga gascmkccga aggagcgstt gaacgttgtc      2100
     aacaagatcg aaacccatag ggcgtgcccg gcwtgcggmg tcgamggtca ccckgcgmgg      2160
     gactgcgkwc awttcmaggg kctgagcttg gacgatcgct ggaaggtggt kaaagmgaag      2220
     aagttktgcc gacgctgttt gactcckcac tcccgttggc cgtgcaamgc wgaagcctgc      2280
     ggkgtgaacg gttgtcaaaa aagacaccac cgactwctgc actacgaccm sccgccggtg      2340
     gagcacaaag cggctsagcs taccgacgct acgacgmasg ccacggtcac gattcaccgc      2400
     cagccggmcm cgacgaccct tttccgmats ttgccagtca cgctgtacgg ggcgmgsggg      2460
     cgggttgaca cstttgcctt cctggacgac ggatcctckg tgacsctkgt ggagagatcg      2520
     attgcgaacm agctgggwat tgcgggagag gackcctctc tctgcmtcca ctggaccggc      2580
     ggcatmaaga aaaacatctc gaacacgcaa ctggtmgatc tggagatctc cggggccagc      2640
     macacgaakc gactcawggc gaaggcggtt tacaccgtcg amgggctsgg mttgccggam      2700
     cagtcgatgg atttcggggc gatggcggcc aagtacgatt acctgcgaag tctccccgta      2760
     cagaacmtga wgtccgcggt tcctggcgta ctgatcggkc tgaacaacct mcacctgatg      2820
     gccccsctga agctacgwga aggcagagaa ggcgaaccaa tcgccacgaa aacccgcctt      2880
     ggctgggcmg tctacggakc katsccsggg mgwgaggcgc ccttcctaca ccggcagatg      2940
     cacatcsatg gaagctcgcc aggtgwcgat cttcacgaat atgttcggag ctttttcgct      3000
     gttgaawgca tcgggatwgk agccaccgga agtgccgawa gtccagacga acaacgagcg      3060
     aaaaaaatct tggcggagac caccaagcgg acttcaaccg gccggtttga aaccggactt      3120
     ctgtggaagc aggattacat cgagtttccg gacagtagag caatggccga aaaacggatg      3180
     aggtgcctcg aaaaacggtt gcttcgggac caaacgctgt acgacaacgt tcgaaagcag      3240
     atcgcmgatt tccagcasaa aggwtttgcc cacaaagcka ctgccgaaga gttgagaagg      3300
     tttgacccgc gccgaacctg gtacctacca cttggggtgg tcatcaaccc aacaaaccgg      3360
     gaaaagttcg tcttatctgg gacgcagccg caaaggttga mggtgtttcc ctaaactcga      3420
     tgctsctgaa gggtccmgac ttgctttcwc ctctkmtgtc cgtgctsttc aagttccggg      3480
     aamggcaagt ggcgatcggm ggtgacatcg aggccatgtt ccaccaggtc cksatmcgcg      3540
     aagcagatcg aagcgcccag cttttctact ggcgggactc cccagagaaa ccgctggaaa      3600
     ctatggtgac cgacgtcgcc attttcggcg ctagttgctc ccccgctcac tcccagtatg      3660
     ttaagaatct caacgccacc gagcacgaag ccgagttccc cagggcagct gacgcaatcc      3720
     ggaccaagca ttacgtcgas gattacctgg atagtgtcga caccgccgaa gaagcagcgg      3780
     caattgcgct tgaggttgct gatgttcacg ctaaagctgg gtttcacatc cggaactggg      3840
     tctccaacga cgactcggtg ttgcagaaaa tcggtacagt caacccaact acagttaagc      3900
     ggttcgtgat ggacaaagat tgcggkttcg agcggttact gggtatggtt tgggtgccgg      3960
     atgaggacgt gtttacgttt cgcttgaact tccggagaga ccacgcaaag ttgctgactg      4020
     gagaggagat ccctacgaag caacaggcac tgagcatcgt aatgagcatt tacgacccga      4080
     ccggattctt agcagcattc atcgtacacg gcaagattat cctccaggac gtctggcgat      4140
     cacgcgtgga ctggaagcaa aaaattccag acgaactgtt ccagcgttgg agacagtgga      4200
     tcgcgctcct tccgaagata gaagatctga aaataccccg ttgctacttc cctggttacc      4260
     accctgacag cctgcggtca ctggaacttc acgtcttcgt cgatgcaagt gaatcggcat      4320
     actcggccgt cgcgcacttc cgactcgtgg acggaaagcg cgtacgctgt gcattcgtgt      4380
     cgagcaaaac gaaagttgca ccattagagc cgctctccat cccgcggctc gaggctaacg      4440
     caggtgtact gggtgttcgt ttgcgcaagt ccatagtgac cggccattcc ctacccatca      4500
     cacggactcg tttttggacc gactcgaaga cggttctcca atggattagg tccatggacc      4560
     ttcggcgcta ccgtccgtat gtggcctttc gagtaaacga aatactgtcc atgtcagcgg      4620
     tcgaagagtg ggggtactgc ccatcccgtt tgaatgtggc agatctcgcc acaaagtggg      4680
     gtaagcaagg cccaccgttg gatatcgcca gtccgtttta ccaaagccaa gaattcgtat      4740
     acgatgaccc ttctgaatgg ccagaaccct gcgacgagat ggtggagctt gcgccagaag      4800
     aactaaggtc ggcatttgta ttcgcgcact tcgttttgaa gccattggtc aaatgggagc      4860
     gattctcaaa gtgggagcgg cttcttcgtg ccatggggta cgtgcatcgc tttattgatc      4920
     gcaaactgaa ccgagcgaag aagccgtgga caaccgattt aacgcgagaa gagctgcagc      4980
     aagcagaaag gagcctgtgt cgaatagcac aatctgatga atacccggac gaagttgcta      5040
     ctttgaacca gaatcaacgt gttccagccg aacaacggcg acccttggag aaatcaagca      5100
     acatcgtgaa gctctgcccg atgctggacg aagcaggagt tctacgagta aaagggcgca      5160
     ttcaagccgc cgacttcgtt ccctacgacg ccaggcaccc ggtcatcctt ccccgagatc      5220
     atccagtgac agcgttgctt ttggattact accatcggcg gttccaacac gcaaacaatg      5280
     agaccgttgt caacgaagtg aggcaaaaat tcagcatctc gaaactgcgg gttcaagtgc      5340
     gtctaacaca gaacaactgt gaatggtgca aggtgtacaa ttcagctcca atcgctccgc      5400
     aaatggcccc actgccccgg gctaggctgt ctccgttttt gcgtcctttc acattcaccg      5460
     gagtggatta ctttggacca tatttgatca aagttggaag aagcgttgcs aagagatgga      5520
     tagcactttt tacgtgtttg acaataaggg ccgttcatct ggaggtcgtt gcgggtttgt      5580
     caactgactc gttcaagaaa gctatgcgga gattcatcgc gcgcagggga gctcctcaag      5640
     aaatctactc ggaccgcggc acgaacttta tcggagcaag tggtgagtta gcaaaggaaa      5700
     tcgttcttaa catcaaccag gagctgagca gcacgttcac ggatgctcac acgcagtggc      5760
     gcttcaatcc cccggcagca ccgcacatgg gaggctcgtg ggaacggatg gtgcgttctg      5820
     tgaaagtcgc tcttggagcc ataccaacgc aacgaaagct agacgaagaa tcgttggtaa      5880
     ccatgctgac agaggcggag tacatggtaa attcccgccc tctcacgttc atccctctag      5940
     agaatgctga tcaagaatcc cttaccccaa atcatttcct gctgatgagc tcgagcggcg      6000
     tgcaacagcc ggcgaaggat cccgtaagcg aaggtgctgc twtgaagaac agctggaacc      6060
     tgattcagca cgcattggac gagttttggc gtcgatggat taaggagtac atgccgacac      6120
     tttcgagacg ggagaaatgg tttggtgaaa cgcggccgat taaagaagga gatcttgttt      6180
     ttgtagttga cgagggaacg agaaatcgct ggcagcgagg acgagtagtg cggacgcatc      6240
     cgggcaagga cgggcaggtt agacgmgtag atgtgcgcac agtcaacgga gttctaccga      6300
     atcgtgcagt cgttcgattg gccctamtag acgtagctgt tgatggtgac gccgaagaaa      6360
     cacttcaggc gacacgtggg ggagaa                                           6386
//
ID   BEL-69_CQ-LTR repbase;    DNA;    INV; 445 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_CQ_;
KW   BEL-69_CQ-I; BEL-69_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-445
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 445 BP; 124 A; 86 C; 83 G; 147 T; 5 other;
     tgttaagagc aatcggtgca gtaggtatcc ctcgtcgaca cgggagccaa ctgttgagta        60
     cattakttcg atttttgtcw smtttcacga tagatggtca aggaacgtca agttcaaatt       120
     cgctccgtca gccttttctg acatcagtct attagcaatc tcttcaacgg tagacgtgta       180
     caattaaggt ggacttatta tttataattt acttgaattt attataatcg attgaaattt       240
     cagcacatct attgggttgc ttacaaataa gagttcgttc tgtagtggtt agaattataa       300
     acggacacta aatgtaacta ttctctatct ttcttwgccg aggacggcct ctaataaaaa       360
     tctatatttt agcttcgagc tgaactgaac tgcaactagc gtgttctgct tccaggatta       420
     atccgagttc taatcaccac gtaca                                             445
//
ID   BEL-69_DTa-I repbase;    DNA;    INV; 4201 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   01-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4201
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (01-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, containing a sequence gap(NNNN).
CC   Paired LTRs are 97% identity to
CC   each other.
XX
SQ   Sequence 4201 BP; 1192 A; 1198 C; 826 G; 979 T; 6 other;
     tggtggccca tgaggggatt cttgcttgaa gtttaaaatc tcagtttgat ctttcatttg        60
     ttaaattata aaacatatca cttatcccgc tatctcacac aaattgcgat cgtctccgtt       120
     tgtgtcccca acacgtgctc tcacaccgac agagcacatt catcaatacc aatacaccgg       180
     tcgtctgaca gcgctcccac acacacacgc gtgttccaag agggtccgtt ataatttcgc       240
     aaccaaggcg aaaatcatcc aaaggggaat cgaaaaccag tacagccggc actcacacta       300
     tagtcgacgt tacgtaaaca caagtgtaag caaagggaaa agatcacgtg agtacgggtg       360
     ctattgattt accaagtgaa gctaggttag gttaaatata aattggtaac acaaatctca       420
     caatatgtct gacaccgatg gcgatgatcc atcattagaa gggtttgtta cactccaaaa       480
     ggagcatctt ctcagtctta cacctctgct acagaattac aagaaggatt ccgcgtctcg       540
     aaaaaccgaa agctattatg taaaacgtct gcagcaaatc gagagtttaa attcggcttt       600
     tgagaccacc catcaagtaa tcatctgcac agagggatac gccaattcgg actatcacgc       660
     caagaagatc gccgtcagtt ttgaggatct gtacatggaa acctactgtc tagtagctga       720
     agaccaacga atcaaattcc cagttcttcc gtcctcagcc tcgtcaccac ccgccggttc       780
     gacggtggcc gacgcacgtg tccacatgcc acaactgcca gtgcccaagt ttagcggaaa       840
     ctgcgttgat tggccaggat attatgacgc cttcactcgg ataattcata aaaatgagcg       900
     gctggacaat attcaacggt ttcattttct caaagaatct ctgccagctg gtcgggattg       960
     cgatattcgg caaattcctt tgacgaccgc taattatacg gtggcatggg acacattagt      1020
     taaacgttat aataatccac gcgtggtctt ttctaaccac atgaacatgt tgtaccagtt      1080
     gccaagccta accaaggaga agtccgatga tatccgatcc atgataagtg cagtcaacgt      1140
     ctgcgcagcc gcctgtaaga atatcaacgc atcattgcag gacggtgatc agtggctcgc      1200
     ccattttttg acatcaaaat taccgaaaga cacgcactcc gcctggtagc atcatctagg      1260
     cagtcaaacc cacattccct cgtaaaagga tcttgaacag tttctcaaca accgcttaat      1320
     caccctagac gccattgata acagaaactg ttcgggcaca agcaaatctg gatcatccca      1380
     atcagacact accaaacgca acacggttca taacacccat gcgcaaccaa gcccccctgt      1440
     gcttcgttgc ccacactgcg atggtaatca tatccttcgt cgatgtcagc gattcctaag      1500
     catggattgc taccaacgta aggaggtcgt gagtaagtca aacctatgcc tcaactgctt      1560
     gagcaaatcg cacatgcttg cccgctgtcc aagtataaag aattgctacc actgtggaca      1620
     ccgccaccat tctttactac atccggcagc ggcgccaagc atcactcaag caccccaacc      1680
     ctactccacg accgtaccat cccgtcaacc acatatcgct tcgattatga acaacaacac      1740
     cgtaccagtt agcccccctg ctaacccaaa cctacaatgt tattcttcca cagcctccca      1800
     tgcaacgcga cagaatatct tgttagctac cgcacggatt attgtctgcc acccccagag      1860
     cggcgctcaa gcaaccataa ctgccctcat cgaccagggg tcggaagcta caataatctc      1920
     agagcatgca gtccaagctc tccaacttcc acgatgccga attcgcgctt ccatcgccgg      1980
     tgtcggccaa actccaggta aacggtgcaa ctttacaaca agctgctgca tccgaacgtc      2040
     gctaaaccca acgttcaacc taaatgtcga cactgcgtaa gttttgaact cgctaacctc      2100
     acatttacca aaccaatcgt tnnnnnncgc ataccccaac cggattcatc attttgcacc      2160
     actctcctca ctgcaaaatc caaagtttct ccaacgaaac cgctcactat cccgaggacc      2220
     gaattatgtg gcgctgtact ggcaactaaa ctaatcaagt gggtaatagc gaccaatcgt      2280
     tggaaaaacg ctaaaatcat agtgacatac tggacggacg acacaatcgt tctccactgg      2340
     atcaaaggag atgtcaccag atggaagacg ttcgttgcca atcgtgttgc ctacattttg      2400
     gaccacagcg atccgcacca atggagacat gttcccacaa cggataatcc agcagacagc      2460
     gctacgagag gactctcccc accctcagaa atctccacct tcgacctctg gtggcgcgga      2520
     ccatcatggt taagtcaact tcccagtgag tggcctgaca cagaagtacc aaatacaaag      2580
     tttgatgagc agtccctaga agcaaaatcc atacgagtcc attcgcaccc gacccgtaca      2640
     ccaaactcgt ccgagtcatc gcatacatac tgcgcttttg tcacaacgct caatcgaaga      2700
     aaaccagata ttacaatcag ctgtcaacgg tggaacttga taacgcactt cgctgcgttg      2760
     taaaaatcgt acaagccgaa acctttcaat ccgacatcca cgggatcctc acaaaaaatc      2820
     atttgccctc caaaagcatc ttaaggaatc ttactccctt tcttgacgac ggcatcttgc      2880
     gcgttcgcgg tcgtctcaag cattctagtc ttccttttga tcgcaagcat ccaatcatct      2940
     taccgcagct tcatttcttt acagaattgg taattcagaa ctcacatcag gctaccctgc      3000
     atggtggcgc tagtctcact ctggcccaca caatgtacaa attctggatt ccaaatggaa      3060
     gaaaggccgt ccggaccatc cttcggaaat gcatcacatg ctttcgcgtg tcacctcaca      3120
     taggaagtca attaatgggt gacctgccga tacacagggt caaccaaccg aaccgcccat      3180
     tcattgcgac cggcgttgat tataccgggg caatcgaaat caaagcggca cggcttcgtg      3240
     ggacaagtac ctacaaggga tatatcgcga ttttcgtctg cctggctacg aaggcggacc      3300
     acctggaagc agttaccgga ctctcatcgg aacacttcct actcgcattt tatcgtttta      3360
     ctggtcgccg aggaccagtc caacacatgt atagcgacaa cggaacaaat ttcgttggcg      3420
     ccaataagtt attaacaaac gcacaacaag ctgatcgcga ccaagctacc tgcccgacat      3480
     ggcatttcac tccaccatac tcccccaatt tcggaggcct ttgggaggcc agtgtcaagt      3540
     ccgtcaagca tcacctaaag aggatcgtcg gcaatcacaa gcaaacttat gaggaactcg      3600
     caacggtgct catcaggatt gaagcttgcc taaactctcg cccactgtgc ccgcttaccg      3660
     ccgatccaga cgacttagaa tcccttacac cggcacattt tctcatcggc gacacactgc      3720
     tcgcacctgc ccattgtcgc ccacaaaacg cgtcgttccg tgaacaattt ctatctcatc      3780
     aaaatttgat ccgtcagttt tggacacaat ggagccgaga ttggctgtcc catcttcaaa      3840
     ctcgcccaaa atggtgtcag gaaaaggaca atttagagat caacgaatta gtacttttca      3900
     aagacgatca actgcctcca tcacattgga cgcccggtag aatcaccagt ctacatcctg      3960
     gagaggattc cctcgttcga gtcgtaacgg taaaaaccaa atcaggcagt cagacgcgct      4020
     ccatctccaa attatgtcgc ctcccaatct catgctaaca cgaaccacct gcttctctct      4080
     tggtagtcaa ttgcatccgt atgtcatttt tctttctctt agcagctacg aatccaaagg      4140
     aactctagat ccagaagcct gaaccaaaag tatcatgctg atttcgcatt ggcgggcggc      4200
     a                                                                      4201
//
ID   BEL-69_DTa-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   01-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-69_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-347
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5682-5682 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 347 BP; 115 A; 76 C; 66 G; 89 T; 1 other;
     tgttcagtcc cacggtacat agtttatcca cacagctgat agccctgcca actgactacg        60
     aaggtcaaga catctggcaa ctctacagta cgagaaggag gggagagacg aggaacacga       120
     gcttcagcga ccagaccaac agcattcttg tcttttccat tgcgaaatat taaatactma       180
     atattaaagt aaaatcatga accaaagtga agtgtaaccg ttataaccta atgaattaaa       240
     gattgaattg ttatatttga acttcagtcg ttttgaacta atcccaagag cccctcttac       300
     tatgacagcc gtgtatatta atttcggcac ggcgtcacaa tcgaaca                     347
//
ID   BEL-6B_DWil-LTR repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6B_DWil_;
KW   BEL-6B_DWil-LTR.
XX
NM   BEL-6_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-409
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 409 BP; 160 A; 74 C; 58 G; 117 T; 0 other;
     tgtttaagat taaactacgg tttcatttga aatggcttca caaaatcaga tgcaacaaga        60
     aatatacaaa acgaaaacaa aaatataaca caaaaataag tcataaagat tcatatgaca       120
     attattgctt aaaaaccaaa ccaaacatgc atccacactc tatggaaaac acttaagatt       180
     acaacagcgg cgcgttatca agtggtcaac gctgagcatg aaatataaac aattttcaac       240
     ccccgaaaaa cgtgggtcat tagaatatgt atttttaaga acaattgtcg cctcctagtg       300
     tttaagagtt attgtacaca caatactttt gtaaataaaa tcagttcata ttttgaattc       360
     aacgaatgaa gattgggtta ttttccttct ctccgggaat ccctattca                   409
//
ID   BEL-6_AA-I  repbase;    DNA;    INV; 5687 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_AA_;
KW   BEL-6_AA-LTR; BEL-6_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5687
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 861-861 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4617-5195] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           663..1697
FT                 /product="BEL-6_AA-I_1p"
FT                 /translation="MQGPAIAAANVHRGQALMPIHHQQFPMVQQPVAVRLP
FT                 TLELPTFSGDYLGWPAFRDAFEALIDRNTQLSDVQKLLYLKSSLKEEAACM
FT                 LDAMDITDANYRVAWDLLIERFENRRVIKQKHLKALFTTKQVSQDSPKELR
FT                 RLLTECQRNINALKQLGEPTDQWSTILVYLISSKLDSTSRRDWETQTQQEE
FT                 SPKYEDIVKFINGRCHTLEALATDKEELRKSSRFKPQLSHASTSSTGCKIC
FT                 ESGQNHPLWNCKKFIAMSPEARFDEVRKWKLCYNCFSSKHVVSKCESRGCK
FT                 SCSEKHNTLLHGQQHHQQEQRPSSHVSSSSESVPQDQRIVNASMASQANHT
FT                 MQ"
FT   CDS           3759..5549
FT                 /product="BEL-6_AA-I_2p"
FT                 /translation="MITLQWITAPSNRWKEFVANRVERIQNSTIGCHWRYI
FT                 SGKDNPADIVSRGLAAEELMDSTLWWNGPAWLVNRSLWPEQPELRNEDIPE
FT                 ARKVCAVVITEPIFFEKYSSLTKMKGVVGYVLRFIHNSKPSNKETRRTGTL
FT                 SASELNNALKRIIRCVQQTSFENEYTELQRNNSVKDKSKLIALNPFIDSDG
FT                 LLRVGGRLKNAELPYSSQHPVILPAHNFLAKRIALQLHRENCHIGPSALLN
FT                 EIRSQYWPIQARNLVKKVCSSCTVCARFKARTAKQIMGDLPASRVQPARPF
FT                 IKTGVDFAGPITIRSSLLRKAPKLKAYIAVFVCMSTKAIHLELVGDLTTQS
FT                 FLAALRRFVGRRGMVAEFFSDNATNFVGANSELRELKRMFESNGEHFSKKL
FT                 AEAGIIWHFIPPRSPNFGGLWEAGVKSVKNLLKKTCGAMVFTYEELNTLLV
FT                 QIESILNSRPLAPVSDDIEDLMPLTPAHFLIGDRLTSNVEPNLTSLSMNRL
FT                 TRWQTIQQLKQKFWKRWSNEYLHHLQQRTKWKSSSADLSTGMLVLLKEDNL
FT                 PPEGWALARIIKVHPGADQRIRVVTVKTSTGEYTRSVSKICPLPDPDSDC"
XX
SQ   Sequence 5687 BP; 1607 A; 1285 C; 1412 G; 1373 T; 10 other;
     tttggtcctt cgaaccggat cgcgcggatc tagtaagtca gaaggcaagg caagtttcgc        60
     gtcagtcgcg ttcggtcgta gtgtaagtag tcgcgtcgcg agtcgtttta gtgtgcgcga       120
     aagtgtgata gtcgcgggac cgtcgtgaca gtgtccgtcg cagtcagcgg aactgtgggt       180
     ctcgaccagt cgactagttc gtcgttcgtc ggtttacttg gtagcaagac agctacagtg       240
     cccgatttta gtgcttcggc gcgcgtcagt cgtcggttgt taatccagtc agacacaagc       300
     agctgaggat ttcaacggcg tcaccggccg gcggtacatt tgcatttagg aacagtttgg       360
     aacgacgtat cgcaacagct ttcggcatga cggagcttaa acgacagcgt ggagtcattc       420
     tcggacgcct gacacggatc gaagtgttca tccgagacat cgaatccaag cccggaatca       480
     cagcagagtt ggttcaggca cgactggatg tcgtcaatca gtgctgggat gagtacgaca       540
     ccgtacaaac tgccatcgac gcggaggaag gagtaaacgt cgaagaggaa gaagaaaagc       600
     gtgccacctt tgaggaaagg tgcatgaacg caagagctgc attgckttcc atcatcgaga       660
     ggatgcaggg tccagcaata gcggctgcaa acgtgcacag aggccaggcc ttgatgccta       720
     ttcaccacca gcaattcccc atggtgcaac aaccagtagc tgtacggttg cctacattgg       780
     aattgccaac gttcagcggt gattatctcg gttggccagc gtttcgcgat gcttttgagg       840
     cgcttatcga cagaaacacg caactgtctg acgttcagaa gttgttatac ttaaagtcga       900
     gcctcaaaga ggaagcagcg tgcatgttgg atgcgatgga catcaccgat gccaattacc       960
     gagtggcctg ggatttgctg attgagaggt tcgagaatcg ccgggtaatc aagcagaaac      1020
     atctgaaggc attgttcacc acgaagcaag tgtcacaaga ttcgccgaag gagttgcgtc      1080
     gcttgttgac tgagtgccag cgaaacatca atgcactgaa gcaactwggt gagccaaccg      1140
     atcaatggag cacgattttg gtgtacctga tctccagcaa actcgatagc acatcacgtc      1200
     gtgattggga aacccaaacc caacaagagg agtcaccaaa atacgaagac atcgtcaaat      1260
     tcatcaacgg tagatgtcac acactagagg cgttggcaac ggacaaagaa gagcttcgca      1320
     aatccagtcg tttcaagcca cagctatctc atgcttctac gagttctact ggctgtaaaa      1380
     tctgtgagag tggtcaaaac catccactgt ggaattgcaa gaagttcata gccatgagtc      1440
     cagaagctag attcgacgag gtgagaaagt ggaagctgtg ctacaactgt ttctcgtcca      1500
     agcatgtagt aagtaaatgc gaatccagag gttgtaagtc ctgcagcgaa aagcacaaca      1560
     ccttactaca tggacagcaa catcatcagc aggaacaacg gccatctagc cacgtgtcat      1620
     cgtcgtcaga atctgtccct caggatcagc gcatcgttaa tgcgagtatg gcgagtcagg      1680
     caaatcacac catgcaakca tcgagtgata ttttggctac tgctatggtc tgcatctacg      1740
     atcgagctgg gagcaaatta ccgtgtcgcg tgctgttgga ttccggatca caaccgaatt      1800
     tcataacgca agcttttgct cggaaacttc ggttgaagga atgcaataca tcgatcaccg      1860
     tccacggagt aagtggagta gaagctcaag ttggaaggca ggtgacggct actatcgagt      1920
     ctcgtgtgaa cggaaagcag tttaacgttc cactgctggt gatgaacaag atcacgaatg      1980
     tgttaccatc tgacaacatt caatgcgata gtttttccac tagaagagaa gagttggcag      2040
     atccgacatt cagcagacca ggaagaatcg atgttctact gggagccaag cttttcttca      2100
     agcttttact tccggaaaag attgaagttg gtgacttcat tctgtggaac actgagctag      2160
     gctgggtagt ttccggaagc tgcaagcagt attcgcggga tcacgtgcaa tcgaatgtgg      2220
     ttacttcgat gactgatgct gatctgctgc aacaattgga aaagttctgg aaagtagagg      2280
     agctgcaagt tggagtaaat ggtgaggcca aattggatcc agcggaaaaa cactatctcg      2340
     aacacgtcag acgcttatca gacggaaggt acgaggtgaa gatcccattg tctcagcctc      2400
     cttcawtgct tggtgattct aaggaacaag ccctacgaag attccatgct ttagagcgca      2460
     ggctacatgg aaacgaccaa cttcgagaaa tgtatacaga tttcatgaga gagtacgaat      2520
     cttctggaca catgagtgtt gttcctgacg gcttggaaga ggtgggtttg ttagtaaatt      2580
     acctccctca tcatgcagtc cttaagccaa cgagtactac aactaagcta aggactgttt      2640
     tcgacgcatc cagcaaaaca tcatcaggtt tttcactcaa cgatattatg atgactgggc      2700
     cgaacatcca agcagatcag ttctcgcttt tgttgggatt cagatgttgg agatatgttg      2760
     tcacagctga cattgccaag atgtatcggc agattcgagt agaccagcaa tcatcgaatt      2820
     tacagcgaat actgtggaga gaaacaccat cacaaccact gaaggtgtat cagctgaaca      2880
     cagtgacata cggtacacgc gctgctccat ttcttgctgt tcgtacgctg caccagctag      2940
     ccgcagacga gaaagacacc tatccgaatg cctgtcgttc tcwttgcaaa cgattctacg      3000
     tggacgactt gttasatgga tcaaacagca aacaggcttt actgaaaacg agagatgagt      3060
     tgctcgcagt gctgcataag ggcggttttg agctgaggaa gtggagtagt aatgatccag      3120
     aattgctgaa ggatttaccg gaaggcttgg tggagaaagg cacaatgtgt gagattgacg      3180
     acggcgaaat cgtcaagtct ctgggattga gctgggacac caggaatgat cagttgacat      3240
     accgtatcca tctaaaacag ttccaggttt actctcgacg taccatcctt tctgcgattg      3300
     catctctgta tgaccccgtg ggattgatag caccgatcat cgtakcagct aaaactttga      3360
     tgcagcagct ttggctctta aatgtctcct gggatgaccc actcccagaa catatcgtgc      3420
     agaagtggca acaattctac gatagtctgc ggcatcttca aaacctgcga atcgaccgat      3480
     ggacgtttgg atgtctacag ccaatcgccg tagaaataca tgggttctca gacgcttcca      3540
     tggtcgcata tggagcctgc atttatgtca aaaccgtcga cgtttctgga aatgcatacg      3600
     ttcgtctgct gtgtgccaaa tcacgcgtag caccattgaa gaaggttaca ctgccacggk      3660
     tggaattatg cgcagcagtt ttattgtctg aactcttgac aaaggttcta gattcwgtgg      3720
     aattgagcgt cgacagctgt tttttgtgga cggactccat gataacgctt caatggatca      3780
     ccgcaccttc aaaccgctgg aaagagtttg tggcaaatag agtcgagagg attcagaact      3840
     ccactattgg atgtcactgg agatacatca gtggaaaaga caacccagcc gacatagtat      3900
     cacgcggact tgcagcagaa gaacttatgg attcaacgct ctggtggaat ggcccagcat      3960
     ggcttgtgaa ccgatcactt tggcctgaac agcccgagct tcgaaatgag gatattccag      4020
     aggcgcgtaa ggtttgtgct gttgttataa ccgaaccgat attcttcgag aagtactcgt      4080
     ccttgacgaa aatgaagggc gtcgtcgggt atgtattgcg tttcattcat aactcgaaac      4140
     catcgaacaa ggagacacga cgaactggaa cgctttctgc ttckgagttg aacaacgctt      4200
     tgaaaagaat aattcgttgt gtacaacaga cctcctttga gaatgagtat actgaacttc      4260
     aaaggaacaa cagcgtaaag gataaaagca agttaatcgc tttaaatcca ttcatcgatt      4320
     ctgacggact tcttcgagtt ggtggaagac tgaagaatgc tgaattgcca tacagttcgc      4380
     agcacccagt tatactccct gcacataact ttttggcaaa acgcatagca ttgcagttac      4440
     atcgggaaaa ttgccatata ggaccatctg ctttactgaa cgaaatacga tcgcagtact      4500
     ggcctataca agctagaaat ctcgtcaaaa aggtatgttc aagctgtact gtgtgtgctc      4560
     gctttaaggc caggacagcg aaacaaatca tgggagattt accagccagc cgagtgcagc      4620
     cagcaagacc attcatcaaa accggagttg atttcgctgg acccatcacg atccgttcca      4680
     gtttgttgcg caaggcaccg aaacttaagg cgtacatagc tgtgtttgta tgtatgtcca      4740
     cgaaggccat tcatcttgaa cttgttggtg acttgactac gcaatcgttt ctggcagcac      4800
     ttcgtcgatt tgtgggacgc cgtggaatgg tggcagaatt cttcagtgat aatgctacaa      4860
     atttcgtcgg agcaaattct gagctgagag agttgaaacg aatgttcgag tcgaacggtg      4920
     aacatttttc caagaaacta gccgaagcag gaattatttg gcacttcata ccccctcggt      4980
     caccaaattt tgggggtctt tgggaagcag gagtcaaatc ggtcaaaaat ttgctcaaga      5040
     agacatgtgg agcaatggtg tttacctatg aggaactcaa cacacttcta gtacaaattg      5100
     aatcaatcct aaattcaaga ccattagctc ctgtctctga cgacattgag gacttaatgc      5160
     cactaacccc agcgcatttt ttgatcggag accggcttac atccaatgta gaacccaatt      5220
     tgacttcatt atcaatgaac cgtttgacac gatggcaaac aattcagcag ctcaagcaaa      5280
     aattttggaa gcggtggtca aatgaatacc ttcatcatct tcagcaacga acaaaatgga      5340
     aatcttcatc ggcagattta agcactggaa tgcttgtgct cttaaaggag gacaatttac      5400
     caccggaagg atgggcttta gcgcgcatca tcaaggtaca cccaggagct gatcaacgca      5460
     taagagttgt cacagttaaa acatcaactg gagaatatac acgatcagtt tcgaagatat      5520
     gccccttgcc cgatccagac tcagattgtt gaaggcgagc cttcaaggcc ggcggtatgt      5580
     ttagaaagaa gaagcagttt gaacggcatt cccctagaaa tcaccatcac cccacataac      5640
     acacggatag actgcgcaaa gggtataaag tccccctcac acacggt                    5687
//
ID   BEL-6_AA-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_AA_;
KW   BEL-6_AA-I; BEL-6_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-349
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 862-862 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 349 BP; 95 A; 84 C; 80 G; 90 T; 0 other;
     tggaagcaat aacaacaaca gcagcagcat cgcacatctg tcaagctcta cactcactga        60
     gcgccttcca gtgagtgacc gagcgcatcg cagtgagtga ccgtcgccag tccagcatac       120
     acatgcatca tcaatcatca tcgccgtcat cgtcgtcatc atttgcgcct ggaaacagcg       180
     gaaatgttct acgcgtttct agaacatgtg gtgcgggata taaatacgcg tgatgtgcgc       240
     ggctgaaaat cagttatatt ttcaaattcg aacaataaag tgaagtgttt tgaatcagta       300
     taacttgcct agtgctttct tcgcgtgcgg aaagtgtcgt tttcgtaca                   349
//
ID   BEL-6_AnFu-I repbase;    DNA;    INV; 6541 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6541
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 699-699 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1337
FT                 /product="BEL-6_AnFu-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MSTEEQAITEASRQLTALEGAVREIYVEASSGKLGSS
FT                 MATVKETILTSLWQDGNASLLRLEALTGPNPRRSTFSEAFAKAKCALMKLR
FT                 PSEGPSAPPLDVTLATAARPDHLPRIELPRFNGSPSEWPAFAGRFEKRVAG
FT                 LTEDADKYAFLLKCFERCDIARNSCEAFENAGMPFSQAWRKLEERFYKKRV
FT                 AFLGHFRQLLDIPKLATASANGLMRIIDVVETSVASAKQIAGATDQSATVV
FT                 EDGLLVSIVLGKLDEQTTERITRRLNAQSIPTWKELREELDRLSNQLYYEP
FT                 RKKEVVRAPTSSAPARPARTVLAATVQASNEQHARGSGTLKANSATVDRRE
FT                 GTRRCYACDKPGHVGALCPELRVRSAYERVNFVMGKGKCINCLSTQHSASQ
FT                 CPSEKRCQVCNKKHHTTLHMESVVDEK"
FT   CDS           1341..6539
FT                 /product="BEL-6_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="RPRRVLLRACSVPPSSRSCFVPPSLSTRAVLPAMAAP
FT                 RSRPAPPPRGVLRSRSVPLPSRSCSVPPSSRSCFVPPSLSARAVLPAMADP
FT                 RSRPAQPPRGVLRSRSVPLSSRSCFVPPSSRSCFVPPSLSTRAVLPAMAAP
FT                 RSRPAPPPRGVLRSRSVPLSSRSCFVPPSSRSCSVPPSSRSCFVPPSLSTR
FT                 AVLPAMAAPRSRPAPPPRGVLRSRSVPLSSRSCFVPPSSRSCSVPPSSRSC
FT                 SVPPSLSTRAVLPAMAAPRSRPGPPPRGVLRSRSVPLSSRSCFVPPSSRSC
FT                 SVPPSSRSCSVPPSLSARAVLPAMADPRSRPASPPRGVSRSCSVPPSSRSC
FT                 FVPPSSHSSSTTTRSVPSLDNYVLLATVSVLIEDGMGVWQRIRCLLDSGCQ
FT                 IQAITSAAAKRLRLPLLPGQLTLMGISGKLPVSNQVRTKVMAINGSYRFSS
FT                 NFFVIPELSKQPIRSIKQDELEIPAGKLLADESFCKPGPIDVILGAGICFD
FT                 SIGLGFQRLPNGLTLQNSKFGWIVGGMIRDTISANLHKQSCYNATSDDDTR
FT                 MSLERFWKVEELSPDDPNNTKLQDHELEEHFKKYTRIADDGRYIVRIPLRG
FT                 ELNQLGDSIEQAQRRLLSLERKLSRHEPTYVEYRKFMREYLELQHMSPVAE
FT                 RDLHKVRYVIPHSCVIKPDSTTTKLRVVFDASAKTTSGYSLNDLQAIGPVI
FT                 QPDLMHVWLSFRTETVVVTADIAKMYRQVWVSEPDTWMQCILWRDNSEESA
FT                 QMYRLRTVTYGEASSSYLACRALYEVGEEVCLSQPEIADAIQRSFYVDNLS
FT                 LGAATPEKLRVIRSGVEKALIRRGMPLRKWASNVAEVVADVPEEHLDATVQ
FT                 IGDKQAIKMLGLAWCPTEDTFQLIIDDSFYVPVNSLSKRCLVGRIAKLYDP
FT                 VGILQPVIITAKILMQELWKENLGWDEVVPSRIIDEWNKFTAQLPLLHQLR
FT                 IPRMALPSDADNAVVYGFCDASIKAYGCAIYVRYHDDNGNRQSRLLCSKSR
FT                 VAPLKKLTLPKLELQAALLLAELYEKIKGIFGIRIKRLSWWTDSQVVLAWI
FT                 RSDNTKWDVFVRNRVTKIQAATNLLDWHYVPTKLNPADIVSRGVPANKLVS
FT                 SEFMKLWLEGPDFIITDEKPRSDCDDVVVLEEIEASPLLLTATAESNCDDL
FT                 LTQYKYHNSFSKTRRHFAWLGRAIHNFKTTYGERRFGPLQLHELEYGLQLL
FT                 LRVMQTTAFPNEVREMQDSGYVPAKGCLQHLNPIVRNNLIYVQGRLGNAEM
FT                 ADDEKLPILVPKSHPFARTIIRHLHEYNFHAGTELVMAEFRTKFWMRDLRR
FT                 TTRGVISGCVICARARPKRLTQRIGQLPAARVNPSPAFTHTGVDLCGPFDV
FT                 IANGRSKRREMVYVCIFVCFSTKAVHLEVVENQSTSAFISALMRFVSLRGR
FT                 PDTIYSDNGRNFVGAAKELSLLRQTHNNRAFQDNLVELAAEKGIRFSFIPP
FT                 RSPNFGGLWEANIKVAKRLFKSTARGAQLYLVELQTLLYQITAILNSRPLT
FT                 TIDASPGSLEALTPAHFLIGRASFTVPAMIADNDTDGVKTRWKRVQRLSQQ
FT                 FWTRWQAEYRNLLRCSAKWTKSSPNAQVGQIVLIGDDNLPVGRWPLGVIVK
FT                 IYTGPDGIVRVADIRTGSGTYTRNVRLLAPLPVDTAERDDNDATADRQPVP
FT                 ADDSENIGRPPVQPPTTDPSTSSVQPPTTDPSTSSVQPSTTELEDDPPPTC
FT                 NIWDGRLRPKGGR"
XX
SQ   Sequence 6541 BP; 1535 A; 1799 C; 1710 G; 1497 T; 0 other;
     tttggtgacc ccgacgtgat taaaaacgcg atttcgtaag tgatagtgtt acgtgctcaa        60
     gtaaaaaccg cgtgatgtct accgaagagc aagctatcac cgaggcatcc cgccagctca       120
     cggcgctgga aggggcggtg cgtgaaattt atgtggaagc cagctccggg aagctgggtt       180
     catcgatggc caccgtgaag gagacgatcc ttacctcgtt gtggcaggac ggcaatgcct       240
     cattattgcg tttggaggcg ttgaccggtc caaaccctcg gcgcagcaca ttttctgaag       300
     cctttgcaaa ggctaaatgc gcgctgatga agcttcgccc aagcgagggt ccgtccgccc       360
     ctccccttga tgtgacgctc gcgacagcag caagaccgga tcatctgcct cgaatcgagc       420
     tgcctagatt caacggttcg ccttcagagt ggccggcgtt cgcgggacgc tttgaaaaac       480
     gtgttgccgg actaacggag gatgctgaca aatacgcctt cctcctcaag tgtttcgagc       540
     gatgcgacat cgcacggaac agctgtgagg cgtttgaaaa cgcaggaatg ccgttttcgc       600
     aagcctggcg gaaactggag gaacgctttt ataaaaagcg agtggctttt ctcgggcatt       660
     tccgacagtt gcttgacatt ccgaagctgg ctacggcgtc agcgaatggg ctgatgcgta       720
     tcatcgacgt ggtagagaca tcggtggcat cggccaaaca aatagcgggc gcgacagatc       780
     agagtgcaac ggtagtcgag gacgggctcc tagtatcgat cgttctaggt aagctggacg       840
     agcagactac cgaacgtatt actcggcgac tgaacgctca gagtattcct acgtggaagg       900
     agctacggga ggagctggat aggctctcca accaactcta ctatgagccc agaaagaagg       960
     aggtggtacg tgctcccacc agctccgcac ctgcacgacc agcgcggacg gtactcgcag      1020
     ccacggtgca ggcaagtaac gaacagcatg ctcgtggctc cgggaccctg aaagccaatt      1080
     cggccacggt agaccgtcgg gaaggtacga gacggtgtta tgcttgtgac aagccaggac      1140
     acgtaggcgc gttgtgtccc gagctgcgcg ttcgttcggc ttacgagcgc gtaaatttcg      1200
     tcatgggcaa gggtaagtgt ataaactgtt tatctaccca acactctgct tctcagtgcc      1260
     ccagcgagaa aaggtgccaa gtgtgcaaca aaaagcacca tacaacgcta cacatggagt      1320
     ccgtcgtgga tgagaagtga cgaccacgtc gtgtactact acgtgcctgc tccgtgccac      1380
     cttcgtcgcg ttcctgcttc gtgccgccat cgctgagtac tcgagcagtg cttccagcaa      1440
     tggccgctcc acgctcgcgg ccagcaccgc cgccgcgtgg tgtcttacgt tcccgctccg      1500
     tgccgcttcc gtcgcgttcc tgctccgtgc cgccttcgtc tcgttcctgc ttcgtgccgc      1560
     catcgttgag tgctcgtgca gtgcttccag caatggccga tccacgctcg cggccagcac      1620
     agccgccacg tggtgtctta cgttcccgct ccgtgccgct ttcgtcgcgt tcctgcttcg      1680
     tgccgccttc gtcgcgttcc tgcttcgtgc cgccatcgct gagtactcga gcagtgcttc      1740
     cagcaatggc cgctccacgc tcgcggccag caccgccgcc gcgtggtgtc ttacgttccc      1800
     gctccgtgcc gctttcgtcg cgttcctgct tcgtgccgcc ttcgtcgcgt tcctgctccg      1860
     tgccgccttc gtcgcgttct tgcttcgtgc cgccatcgct gagtactcga gcagtgcttc      1920
     cagcaatggc cgctccacgc tcgcggccag caccgccgcc gcgtggtgtc ttacgttccc      1980
     gctccgtgcc gctttcgtcg cgttcctgct tcgtgccgcc ttcgtcgcgt tcctgctccg      2040
     tgccgccttc gtcgcgttct tgttccgtgc cgccatcgct gagtactcga gcagtgcttc      2100
     cagcaatggc cgctccacgc tcgcggccag gaccgccgcc gcgtggtgtc ttacgttccc      2160
     gctccgtgcc gctttcgtcg cgttcctgct tcgtgccgcc ttcgtcgcgt tcctgctccg      2220
     tgccgccttc gtcgcgttct tgttccgtgc cgccatcgtt gagtgctcgt gcagtgcttc      2280
     cagcaatggc cgatccacgc tcgcggccag catcgccgcc acgtggtgtc tcacgctcct      2340
     gctccgtgcc gccttcgtct cgttcctgct tcgtgccgcc ttcgtcgcac tccagttcaa      2400
     cgacaacgcg cagcgtccct agcttggaca attacgtcct attagcaacc gtttctgtgc      2460
     taatagaaga cggaatgggg gtgtggcaac ggattcgctg tcttcttgac tctggttgtc      2520
     aaatacaagc gattacttcg gctgcagcca aacggttgag gctaccgctg ctacctgggc      2580
     aactaacgtt aatggggatt agtggtaaac tccctgtatc gaatcaagtc cggactaaag      2640
     tcatggcaat taatggttcc taccgtttta gctccaactt cttcgtgata ccggaactca      2700
     gtaagcaacc cattcgcagc attaagcagg atgaactcga aattccagcc ggaaagctac      2760
     ttgccgatga aagcttctgc aaacctggcc cgattgacgt catactaggt gccgggatat      2820
     gcttcgattc aattgggtta ggatttcagc gcctacccaa cggacttacc ttgcaaaatt      2880
     ccaaattcgg atggatagtt ggaggtatga ttcgagatac gatttctgct aatctccaca      2940
     agcagagttg ctacaatgct acgagcgatg atgatacaag gatgagcttg gagcgatttt      3000
     ggaaggtcga agagttatca cctgatgatc caaacaacac aaagctgcaa gaccacgagc      3060
     ttgaagaaca tttcaagaag tacaccagaa tcgccgatga tggtcggtat atcgtccgta      3120
     ttcccctacg gggggagctg aaccagctgg gtgattccat tgagcaagcg cagcgacgat      3180
     tactgtcgct ggaacgaaaa ttgtcacggc atgaacccac ctacgtggag tacagaaagt      3240
     ttatgcgcga gtacttggag ctgcagcaca tgagtcctgt cgcagaacgc gatttacata      3300
     aggtccgcta cgtgatccca cactcgtgtg tgataaaacc agactccacc actaccaaac      3360
     ttcgggtagt atttgacgcg agtgcgaaaa ccaccagcgg gtattcgctt aacgacctgc      3420
     aagccattgg accagtaata caacccgatt tgatgcacgt ttggctttct ttccgtacag      3480
     aaacggtggt ggtgacggca gatatcgcca aaatgtaccg tcaagtatgg gtatcagagc      3540
     ccgatacctg gatgcagtgt attttgtggc gtgacaattc ggaggaatcc gcacaaatgt      3600
     acagattgcg caccgttacg tacggcgagg catcctcatc ataccttgct tgccgggcac      3660
     tttacgaagt tggcgaagaa gtgtgcttgt cacagcccga gatcgctgat gccattcaac      3720
     gatcatttta cgtagacaac ttgtctttag gcgcagcaac tccagaaaaa ctacgggtta      3780
     ttcgatctgg tgttgaaaag gcgctcattc gaagaggtat gcccttgcgg aaatgggcat      3840
     ctaatgttgc tgaggtagta gctgacgttc cagaagaaca ccttgatgcc acggtgcaga      3900
     ttggcgacaa gcaggccata aaaatgttgg gactagcatg gtgtcctacg gaagacacgt      3960
     tccaactaat catcgacgac agcttttacg ttccggtgaa ttcgttaagc aaacgatgct      4020
     tagtgggaag gattgccaag ctctacgacc cggttggaat ccttcagcct gttattataa      4080
     ccgccaaaat cctcatgcaa gagctatgga aagaaaatct tgggtgggat gaagttgtac      4140
     catcccgcat aatcgatgag tggaacaagt tcacagctca gcttcctctg ctccaccagc      4200
     tccgtatccc tcgcatggcg ctacccagtg atgcagacaa cgcagttgtg tacggttttt      4260
     gcgatgcatc gattaaagcc tacgggtgcg caatatacgt gcgctatcac gacgacaacg      4320
     ggaatcgaca atcccgatta ctatgttcca agtcaagagt agcgccgctg aaaaaactga      4380
     ctctgcccaa gttggaactt caagctgctt tattattggc ggagctctac gaaaaaataa      4440
     aaggcatctt tggcatccgc atcaaaaggc tcagttggtg gactgattcc caagtcgtgt      4500
     tagcatggat acgttccgac aacacaaaat gggacgtctt tgtaagaaat cgggtgacca      4560
     aaatccaagc agcaacgaac ctactggatt ggcattacgt gccaacgaaa ttgaacccgg      4620
     cagatatcgt atccagagga gttcccgcca acaaactagt gagcagtgaa ttcatgaagc      4680
     tttggctaga agggcctgac ttcatcatca ccgatgaaaa gccgcgatct gattgcgatg      4740
     atgtggtcgt attagaagaa atcgaggcgt cacctctact gctgactgcg acggccgaat      4800
     ccaattgtga cgacttgttg acgcaataca agtatcacaa ttcattcagc aagacgaggc      4860
     gacatttcgc atggctcggc agggcaatcc ataacttcaa gacgacctac ggggaacgaa      4920
     gatttggtcc tctgcagcta cacgagttgg agtatggact ccaactatta ctacgggtaa      4980
     tgcaaactac ggcatttccc aacgaagtac gagaaatgca ggactccggt tacgttcctg      5040
     caaagggatg cctgcagcac ctgaacccaa tcgttaggaa taacttaatc tacgtgcaag      5100
     gacgattggg gaatgctgag atggcggatg acgaaaagct cccaatacta gtgcccaaat      5160
     cgcacccttt cgcgcgcacg ataatccgac atctccacga atataacttc catgcgggaa      5220
     cagaattggt catggcggaa tttcgaacga aattctggat gcgggaccta cgacgtacta      5280
     ctcgtggtgt gatatcagga tgcgtgatat gtgcccgagc gcgacctaag cgattgacgc      5340
     aaagaattgg acaacttcct gcagcacgcg tcaatccctc acccgccttc acgcacacgg      5400
     gagttgatct gtgtggacca tttgatgtca tcgcgaacgg ccgatcaaaa cgacgagaga      5460
     tggtctacgt gtgtatcttc gtttgctttt ccaccaaagc ggtacatttg gaggttgtgg      5520
     aaaaccagtc cacgtctgct tttatatcag cactcatgcg ttttgtgtca ctacgtggtc      5580
     gacctgacac aatatactca gacaacggac gaaacttcgt aggcgctgcc aaggagttga      5640
     gtttacttcg ccaaactcat aacaaccgtg ccttccagga caacctagtg gagctggctg      5700
     ctgaaaaggg aatacgtttc tctttcatcc caccgcgaag cccaaacttt ggaggacttt      5760
     gggaagcaaa catcaaagtg gctaaacggc tttttaagtc aaccgccaga ggagcacaac      5820
     tatatttggt agaacttcag acgctattgt accaaattac agccattctt aattccaggc      5880
     cactcacaac gatcgatgcc agccccggat cccttgaagc actaacaccg gcacatttcc      5940
     ttataggaag ggcttctttt acagttcctg cgatgattgc tgacaatgac acggacggtg      6000
     tcaaaacgcg ttggaagcgg gtccaaagac tatcgcaaca attttggact cgctggcaag      6060
     ccgaatatag aaatctgctt cggtgtagcg ccaaatggac gaagagctcc cctaacgcac      6120
     aagtcggaca gattgtgttg atcggtgatg ataacctccc agtgggacga tggcctctgg      6180
     gagtgatcgt taagatctac acagggccgg atggcatagt acgtgttgct gacatccgga      6240
     cgggtagtgg gacctacact cgaaacgtca gactgttggc accacttcct gtggataccg      6300
     ctgaaagaga cgacaacgat gcgactgcgg accggcagcc tgttccggct gacgattccg      6360
     aaaacatcgg acgacctccc gtgcagcctc cgacgaccga cccttcgaca agctccgtgc      6420
     agcctccgac gaccgaccca tcgacaagct ccgtgcagcc ttcgacgaca gaactcgaag      6480
     acgaccctcc acctacgtgc aatatttggg acggacgatt gcgtcccaaa ggggggagaa      6540
     a                                                                      6541
//
ID   BEL-6_AnFu-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-327
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 712-712 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 327 BP; 77 A; 78 C; 80 G; 92 T; 0 other;
     tggttgtcga atttaactgc gtgagaaaac ccggctgtta tacgcgccga cgacccctgc        60
     ttttgatgcg ttcccggagc gataagtgcg ttctgatcgc ttgtcaactg cgtgactgcg       120
     tgggagagag tttccggcgt ggatcctctc tccgctcctt aaaaaaaagg ctacgtgcga       180
     tcgatctacg ggtcgatcgc gctcattacg tctgttatcc ttaaccaagc ggtttcgtgc       240
     agcgacttac aataccgaat aaatagtttg taacaattaa aaattcgcgt gttattttcg       300
     acgtgattac ggcttcgtgc aaaaaca                                           327
//
ID   BEL-6_BTa-I repbase;    DNA;    INV; 6119 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6119
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 593-593 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~92% identical to each other.
XX
SQ   Sequence 6119 BP; 2143 A; 1145 C; 1191 G; 1640 T; 0 other;
     tttggtgacc ttgatgtgat tatgtactcg aaatctcttg tcaaattaaa aaaaataata        60
     ataaggaatt agagtgaaga tgaaatgttt gtacttgaga taacctaaaa aaaaaagaga       120
     gaaaaagaag acgttgcgtt taacactttg acaagggcat ttcttactaa tttattattg       180
     agaatgcagt gagcggtttt tgcctccatt cgataataat ataaatgcag tgagcgatat       240
     tgtcgcacac atacaaactg agagcttaaa agctacatca tagagaattt agtgagcgat       300
     attttcgcct ccattcccga tgtgaactca tgaattaagc ttggatagaa ataagatcgc       360
     agtgagcggt attttcgcct ccattcatat ccttgcgata cttgtgtaag acctgggcct       420
     aggcttctca atcgatagta cagagggggt gtctcgacag gaacgaaaat ttttttaaaa       480
     aaaaaaacgc attgctaggt acattgttgc caggcgagct tgatgatgga ttgatgaaaa       540
     ttgtgtaaat ccattttttg attcgtaatg cggttaaaag cggttaagtg cggttcttaa       600
     aaaaaaaaaa aaaaaaaatg aaaaataata aaaataatga agaaatcaaa aactgcgaag       660
     gcatctaatt cccaaatcag accaacgctt tccactcctg ctcatcatga aaagttaaat       720
     gaattattaa cctcaaaaga acaattggag cgttagctgt ttaattttaa gaaatctgtg       780
     gaaggtgatg tttcctcact atcagcaata aaagcacggt atgatgaatc agcagcattg       840
     ttgccacatt atttcaaaat tttgcgtgaa attacaaaca ttgataatag ttatgttgat       900
     ggagataact tcgataagtt tggaagcact tactatgaaa cggttggaca agctaaagaa       960
     ctattggaga cgcaaccaag tgtgtttcca gtagccaaac ccacaacagc tttgaaaact      1020
     aagttaaaac caccagaatt accgaccctt tttggagctt ataagcaatg gccttcgttt      1080
     ttccaaatgt tcaattctct agttcattaa aacatgaact taacggagat catcaaattt      1140
     cattatttac ggtcgtcttt atcaggaaaa gccctctctt tgatcagaag catcgacttt      1200
     acggaagcaa attatttagt tgcgattcaa actttgagag atgaattcga aaataaaaaa      1260
     ataataatac gtaatcattg cgaagcgatc gtcaatcttg gtttccccac atgttttcgt      1320
     aagaaaaagg aaacattgac agcaaaagac ttagaaaata tacacaacaa aattaatcag      1380
     gcggtacaat cactgaatgc tttgaaggtg gatattagtt cttgggatcc actagtggtt      1440
     catctagcaa ctgcaaaatt cgatccaagc acactgacgg aatgggaaaa ggtggcgcct      1500
     accaaggatc cccgagggct tcgagagcta cctgagtttt taaagaaacg ctcattttta      1560
     cttgaatcgg tagagcgcag gaagtcacag tcaattccga gggacaatta caagaaatcg      1620
     gtggaaaaga gaaaagcaac aacgaaaact ctgtgctatg tgcagcatga aaaacgacct      1680
     aaattgcaat gcacggaaca aaaacaaaaa ttaaggtcgt gtttactctg tcagggaaag      1740
     caccccttgg cattttgcac aaaatttaac aagttgtctc atcaagaaaa attaaaattt      1800
     ataaaaccaa aatatatgtg tcaatgctgc ttgaaaagac atctgggtaa atgcactaat      1860
     gctccatgtt tcaagtgcgc taagcctcat catttcttat tgcacgatga cgagcccatt      1920
     tataaatcta tggatgagga acctgaactt tcagcaagca actcaaaccc aaagaatata      1980
     tgactagcta cagttcagtt acaaattttt gcgaacagat aacttcataa atgcaaggct      2040
     ttattggatt caggcgctca aggatcgttt ctcaccgagg agaaggcaga aatgctcaaa      2100
     cttccatata catctgtcaa ttgtgaagtg tccggaaaga gtgaatctat cggttcaatc      2160
     tctctataag tcttcgatta tgcagattcc ttgtctcgtt atcagcagtc ttccaattga      2220
     aattccatct gtacaggaac acattatgag tgtggcgacc catctaccat tagcggaccc      2280
     aacgtttgat caactcagct cggtagattt gactttaggc tcaaatgtct tttggaacgc      2340
     tctgttgccc gattttatac cggccgataa gaattggcca tgcttgcaaa aaaccatttt      2400
     cggatgggtt gcaggcggct ccctgacaac ggaccaccaa gaagtgaagt acaaagaatc      2460
     agtacaatca agaaggtttg caggattcgt aaaagaatca atcttcaaca aaacaatggc      2520
     ccaattttgg gatatagaga atggattcct ataatccgac aaatgtggga agcaggaatg      2580
     tgaaatcttg taccctaaca cgactgctat cgggccagat ggaaaattca tcgtccgttt      2640
     acttctgaag gaagatccga ctgtgctagg agattcaaaa agattggctt taagaagatt      2700
     gtatttcttg gagagaaagt tagaaaagaa tccagtattg aagaaaatgt attgtgattt      2760
     tttaactgaa tatgaagaat tgtgctagga gattcaaaaa gattggcttt aagaagattg      2820
     tatttcttgg agagaaagtt agaaaagaat ccagtattga agaaaatgta ttgtgatttt      2880
     ttaactgaat atgaagaatt aggacacatg agcgaagtcc cggattcgga ggcggccaac      2940
     ttcccagcat attatattcc gcatttagga gttttacgac aaaattcgct aacgacaaaa      3000
     ttaagagtgg tatgcaatgc atctgcaaaa tcctcatcaa acaaatcttt gaatgacatt      3060
     ttaagtgttg gcctctctgt ccaagacacg ctccttgaga tccttttgag attcagagag      3120
     tttccagttg ctgtagttgg tgatatcaca aaaatgtaca gacaaacgtg gattcatctc      3180
     tcacaaagag agttgcaacg aattttgtgg aaaaagaatt caaaagaccc tgtaaaaata      3240
     tacagattaa acacagtgac ttacggaact ggaccagcat catttctggc aacacgaagt      3300
     ctgaaagaag ctgccattag aggcaaaacg aagttcccca agacggcaaa cacactcttg      3360
     aaacagtttt atgtcgatga ttttttagga ggtgcaaacg atagcaagtc ggccagaaca      3420
     ctaaaagaag aatcggaaga aatacttgaa ccgtacggag taaacctgcg caaatggcaa      3480
     tcaaacgatc ctgctgtatt aactacagaa aagcaaagaa cgaacccgtt ttacttcgac      3540
     agcagtgaag aatcaaaagc gttgggagtg gggtggaagc cgaaagaaga ctactttttc      3600
     ttcaaatcat cgcctgagtt caacaaaagt ggtacatttt caaaacggat aatattatct      3660
     gacatatcaa aattgtttga cgccctcgga ctagtaagcc caataatagt aaaggctaaa      3720
     tttttaatgc aaaaaatttg gctcgagtaa acaaaaaatt gggaccagcc actgtccatt      3780
     gaaatacttc aagagtggaa caagatatga gcagacctaa catttttgga atgccatttt      3840
     tggaaccaat caccataccc cgccgtattt acgaggttct tagtgactgt gctcctattt      3900
     ttcatggctt ttctgacgca tctcagagag gatatggagc ttgtatttat gccttaatgt      3960
     caataaatcc gcaatcaaac acagaattcc aattaagctt aatttgttcc aagtcgagag      4020
     tggcgccaag caagaaagct catactatcc ctcgcttaga attagcggca gctgtgctcc      4080
     tgtctgatct catgtgaaaa gtaaatgaag cagtacaatt aaagcctcaa aaaattgtac      4140
     tgtggacgga ttcaacgaca gctatccatt ggattaacaa ctctaactca agtaaatggc      4200
     aaacttttgt ttccaatcgt gtcaagaaaa ttcaagagac gacaacagcc ttgaaagctg      4260
     tttggcacca tgtgccaacg aagaacaatc ccgcagatat aatttcaaga ggaacagatg      4320
     ctgaaagctt gaaactttca acagtttggt ggaacggacc agatttcatt tccactggcg      4380
     aatcaaaatg gcctgatcag tcaaaatttt tgacacaaaa ttcggaagga aatgaagaaa      4440
     tcatgctttg ttcagcgctg ataaaaacgc ctgatgaaat tacaaatctt ctaaataaat      4500
     tttacagctt gaacaagata ctacgaattc tagcatatct gttacggttc ataaaccgtt      4560
     gcaaaaatgc aatccaaggc tcaaggaaag gtagcatcaa aaagaaaatg agaaagagtc      4620
     cgttagaact accatcctta gtagaaatag aaaagtcaag aaacctttgc atgcgccata      4680
     ttcagaagga agcgttttct caagaaataa tgtacctggc taaaaagtct ggaatggttc      4740
     tcccttcgag cagtgttaga tcgctgcacc cctttttgga tgaagacgga attttgagag      4800
     ttggaggccg tttgactaat tctgaattaa cattctcaca aaagcatcaa attctgctgc      4860
     cagcaaagca caggtttaca aggctgttct ttcatcaaga acacctcaaa cttttgcatg      4920
     caccgccaca aatcttacta gcacacatac ggcgagaata ctggccctta agtggcccaa      4980
     cagaaacaaa gaaaattgta aacagctgca tgaagtacgt aaggactaat ccaaaacagt      5040
     gctcacaaat aatggctcca ttaccaacat caagggtgac acaagcaaag ccgttttcaa      5100
     gggtgggtat tgattacacc agagcgttga gcgtgagagc aacattcaga aaaaacgcta      5160
     atgtgttgcg gacatatgtc ataatttttg tatgctacgt gtcgaaagca cttcatcttg      5220
     aagtaacttc tgatctttct tcaaaagcgc ttctttctgc atttaaaata tttatagcaa      5280
     gaagaggatt acctacaaaa attttcacgg acaacagtag aacattttta ggaggaagca      5340
     atcaccttca aaaccagttt gatttactaa caaaggatcc cgatatccag aaatacatga      5400
     cagaaaatat catagaatgg aaatttaacc ctccaaattc tcctcatcat ggtggacttt      5460
     gggagtcagc aataaaaata ttcaagtcgc aattgtataa agtaataaga gcaagaatat      5520
     ttaatttaca gcaattaacg cagcttgtcc ctcaaattga agctgtgctc aattcaagac      5580
     ctttggtacc cttatccagc gcccctgaag agtttgacat attgacgcca ggtcattttt      5640
     taataggaag acctctcaaa tcttatcccg ataatacccc tacaaagcaa tctacaaaaa      5700
     ttctacaggc gcatgaggta atacaggaag gattcaacat attttggaaa aaatggcaaa      5760
     acgagtatct tcaacacaca caaaaatttt ccaagtgaca ctcaaaaaac gaatctccga      5820
     aaataggatc gttagtcgta ataagggata gatcctgtcc cccgttgttt tggaaactag      5880
     gaagaataca aaaacttcac ccaggatcag atggcatcac aagagtagtt acattgaaaa      5940
     caccaacatc cacactagtg agagccatca ctgaagtttg tgtattaccg ttaagagatg      6000
     attaacttaa attcaatatg attaaaaaag agcacgaagt ttatactgat gaaattttaa      6060
     aatctttcaa atttttaatg atattaaatc tacatacctt ttttaggggg gggggagaa       6119
//
ID   BEL-6_BTa-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-166
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 571-571 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~92% identical to each other.
XX
SQ   Sequence 166 BP; 43 A; 26 C; 26 G; 70 T; 1 other;
     tgtaaaaact ttacaacact gtatagtttt tagttgccta gtgacttctc cctgctgttc        60
     tttatatgct gttaatatat aaaaagttac tgcgatccag tttgktttcc tctggtattt       120
     gagattgttt atttactgat tagtttagct attgaaaata gctcca                      166
//
ID   BEL-6_CoFl-I repbase;    DNA;    INV; 4510 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-4510
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2313-2313 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           384..4508
FT                 /product="BEL-6_CoFl-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 and ribonuclease H (including nonsense mutations)."
FT                 /translation="MNTKRCQTCGKAHHTMIHGARLLQPISRLASQPTQHQ
FT                 E*EISAVIRHTHRRNSTSSNTHPRVNIKSNSTRITSSNQTSSHSSILLPTA
FT                 VAQVRAPAAHHHLRLLIDQGSELSYISEDAVKRLQLTRTKSNICILGIGGN
FT                 VVSKALGKVELRLFSLYSDSSVDVVLHVLPRVTAPLPSFQCKTRSWLHTEF
FT                 LELADPHFYLPRDIDLLLGTDYYSAIITSDLLRGSLSEPIAQRTLFGWILS
FT                 GCVNQPVTKINRHTHHIVSKIEDKLQELLINFWIQEEVPSKSSSQLTPEEQ
FT                 ECEEHFVRTHSRDSTGRYVVKLPLKQSPSLLGNSVNRARKCFDRTVARLKT
FT                 DDKYDKLYTDFMNEYLSLGHMRPVPADELNIKPHFYLPHHGVLKEDGDNAK
FT                 IRVVFNGSALTSSGHSLNSITHTGPNLLPNITDILFWLRTFKWTFSADISK
FT                 MYRQIKVHPDDWDLQRIIWHSKTHEEAHFQLTTVTYGTRPAPFLATRSLLQ
FT                 LVKDEGHRYPQAARILTSGRYVDDIFGGAETPDELNEQALQLKELCMAGGL
FT                 PLAKWHSNSPGFSYSNSSEESALSLDDCDAKVLGMVWKPLSDNLTFQCTLK
FT                 PLSQTPTKRTILSEISQIFDPLGIVAPVIVAAKLIIQELWLLKITWDTPIP
FT                 DALAQRWLQIRDDLAKLSGVTVPRWLGAHPSSAVELHGFADASQDAMGAVI
FT                 YLVIKSDSATSSSFVCSKTKVSPLKRMSIPRLELTAALILAKLTKYVTDQL
FT                 TLNISNIHLWTDSSVTLYWISSHPNKWKDFVRNRVAAIQDLVPAAHWRHVP
FT                 GKENPADCASRGILTSQLIEHRLWWHGPEWMIQPQDGWPLQPSDVEVEDET
FT                 EARQVSALVSSVSDSEFLLRLTQSSSTLHKLYRITATLLLACAKFKALLTH
FT                 QESSVAVTAELITQAKLLLIRLTQQECFKEEIKMLKSGSLPKGHVFHRLMA
FT                 YTDDAGILRVGGRLMNAKLRPDAKHPALLPRQAQFTSLVIDQAHRQTLHGG
FT                 TQLTLSKTRQEFWIIGGRAPIRSRILYCVKCARYRAQRAQQLMGQLPEARV
FT                 TPSRPFAHTGIDYAGPIHLKSWRGRGSKTYKGWMCVFVCFSTSAVHLEAVT
FT                 DYSTEGFLSAYWRFVSRRGRPFKLYSDCGTNFVGADRALQQLYSEAISQNS
FT                 HLSAMLAQDGTSWHFNPPAAPHMGGKWEAVVKSMKHHLHRTMGETLYTLEE
FT                 ITTLLTQIEAILNSRPLEPLTNDPEDLDTLTPGHFLVGSALNSPPEPCLLD
FT                 LPPARLTRWQLIQAQKQRFWKQWSTQYLLRLNSISKWHTPAHDIKTGSLVL
FT                 ITSETLPPGKWPLARVVDVHPGKDGLVRVVTLKTSVGALRRPIHKLVPLPV
FT                 YGCCQPLTDGGR"
XX
SQ   Sequence 4510 BP; 1198 A; 1187 C; 1038 G; 1087 T; 0 other;
     tttgtggtcc ttcgagccgg atcggggtga ttggggagtg atccggtggc agtgcgcgat        60
     ggaagagaca agataactca tccacatcta gtaagactca atccaaaccg agcaaagctc       120
     agcacgctca tacaggtcaa actcaaccgc tcggcaacac tcaaccgggc agcaacgctc       180
     agcagaatcg ggttgggagt tcggctcggt cgcaggatga tagaccggct cctccagtgt       240
     tcccgtgcac gtactgcaac cagcaacact ttattgctcg ctgtccggca ttcgcggccc       300
     tctccattga ccaacgatac cagttcgtgg atgaaaagcc tttgtgcttc aactgtttgg       360
     gccgccatgc tgctgctaag tgtatgaaca cgaagaggtg ccaaacctgt ggtaaggctc       420
     accataccat gattcacggc gctcggttgt tgcaaccgat cagcaggttg gcgtctcagc       480
     cgactcaaca tcaagaatag gaaatcagcg cagtcatcag acacactcat cgtcgaaact       540
     ccacatctag taatactcat cccagagtca acatcaagtc aaactcaaca aggatcacat       600
     cgtccaacca aacatctagt cactcatcta tcttgttgcc aacagcagta gcccaggtac       660
     gtgctccagc tgcacatcat catctcaggc ttctgatcga tcaaggttca gaattatcat       720
     atatttcgga agatgctgtg aagcgtctgc agctgacgcg cacgaagtcc aacatctgta       780
     tcctgggcat tggaggcaac gtagtcagta aagcacttgg taaagtagaa ctcagattgt       840
     tttcattata ttctgactcc agcgtcgatg tggtgctcca cgtcttgcct agagtaacag       900
     ctccactacc atcttttcaa tgtaagacaa gatcgtggct gcatacggag tttctggagt       960
     tagctgaccc ccatttctat ctgccacgag acatagactt gctacttggc actgactact      1020
     attcagctat aatcacctca gatctgctca gaggttcttt atcagaacct atcgctcaac      1080
     gtacactgtt tggttggatt ttatcgggtt gcgttaacca gcctgttaca aagattaatc      1140
     gtcacactca ccatatcgtt tcaaaaatag aagataaact tcaggaatta ctcatcaact      1200
     tctggattca agaagaggtc ccttcaaagt caagctcgca gcttacacca gaggaacagg      1260
     agtgtgagga acacttcgtg cgaactcact ctcgggatag caccggaaga tacgtggtga      1320
     aacttcctct gaagcaatct ccatctctgc tgggcaactc agtcaaccgt gctcgtaaat      1380
     gcttcgatcg cacggtggcc aggctcaaaa cagacgacaa gtacgacaag ctctatacag      1440
     atttcatgaa tgaatatttg agtcttggcc atatgcgacc ggtgcctgca gatgagctca      1500
     acatcaagcc tcatttttat ctgcctcatc acggcgtatt gaaggaagat ggagacaacg      1560
     ccaaaatcag ggtggttttc aatggatcag cccttacttc ctctggacat tcactcaaca      1620
     gcataactca cacgggacct aatctactgc ccaacataac agatatactc ttctggttac      1680
     gcacattcaa atggactttc tctgcggaca tctccaagat gtatcgtcag atcaaggttc      1740
     atccagacga ttgggatctt cagcgaatca tctggcatag caaaactcac gaggaagctc      1800
     acttccagct caccacagtg acctacggga cgaggcctgc tccatttctg gccacacgct      1860
     cactgctgca gctggtgaag gatgaagggc accgttaccc ccaggcggcc cggattctca      1920
     ccagcggcag atatgtggac gacatttttg gtggagcgga gactccagat gagttgaacg      1980
     agcaggccct ccaactcaag gagctgtgca tggcgggcgg attgcccctg gctaagtggc      2040
     actcaaactc gccaggattc agttactcaa actccagtga agaatcagca ctctctctcg      2100
     atgactgcga tgctaaagta ctcggaatgg tttggaaacc actttcagac aatctcacct      2160
     ttcagtgcac actcaagcct ctcagtcaaa ctccaacgaa gagaacaatt ctttcagaaa      2220
     tatctcaaat cttcgatcct cttggaatag ttgctccagt gattgttgca gccaaactca      2280
     tcattcagga attgtggcta ctcaaaatta catgggatac acccatacca gatgctctcg      2340
     ctcagaggtg gctacaaata cgagatgatc tagccaaact ctccggagtg acggttccta      2400
     gatggcttgg agcacatcct tcttctgcag tggaactcca tggctttgct gatgcgtctc      2460
     aggatgctat gggtgctgtg atttacctgg tgataaagtc agactcagcc acgtcaagct      2520
     cattcgtctg ctccaagacg aaagtatcac cactgaagag gatgtcaata ccaaggttgg      2580
     agttgacagc agctctcatc ctggctaaac tcactaagta tgtcaccgac caactcacac      2640
     tcaatatcag caacattcac ttatggacag attcgtcagt cacactctat tggatttctt      2700
     ctcatccaaa taagtggaag gatttcgtca ggaatcgagt tgcagcaatt caggatctgg      2760
     tccctgcagc acattggaga catgtccctg gaaaggagaa tcctgctgac tgtgcttcta      2820
     gagggattct cacttcacaa ttgattgagc ataggctctg gtggcatgga ccagagtgga      2880
     tgatacaacc ccaggatggt tggcctctgc agccgagtga cgtcgaggtg gaggatgaga      2940
     cagaggcgcg tcaggtgtca gcattggtgt catcagtctc ggactcggag ttcctactca      3000
     ggctcactca gtccagctcc acattgcaca aactctatcg tatcacagcc accctcttac      3060
     ttgcttgtgc caagttcaaa gccttactca cacaccagga atcatccgta gctgtcactg      3120
     cagaactcat cactcaagct aagctcttac tcatcagatt aactcaacag gaatgtttca      3180
     aggaggaaat caagatgctc aaatcaggtt ctctcccaaa gggccatgtt ttccaccggt      3240
     tgatggcata tactgatgat gctggcatac tgcgtgtggg aggcagactc atgaatgcca      3300
     agctcagacc tgatgcaaaa catcctgccc tacttcctcg tcaagctcaa ttcaccagtt      3360
     tggttatcga tcaggctcat cggcaaactc tacacggagg aactcagctc actcttagca      3420
     aaactcgtca agagttttgg ataatcggtg gaagggcccc catccgatcc agaatcctct      3480
     actgtgtcaa atgtgccagg taccgggcac aaagagcaca acaactcatg ggacagttac      3540
     ccgaggccag ggtgactccc tccagaccgt ttgctcacac aggtatcgac tacgcaggtc      3600
     cgatacatct caaatcttgg cgcggcagag ggtcgaagac atacaagggt tggatgtgtg      3660
     tgttcgtgtg tttttcgacc tctgctgtgc atctcgaagc agtgacagat tactctaccg      3720
     aaggattctt gtcagcgtat tggcgatttg tctcacgtcg gggacgtcca tttaagttgt      3780
     attctgattg tgggacgaac ttcgttggtg cagacagggc tcttcaacag ttatactcag      3840
     aagcaatcag tcaaaattct catctatcag ccatgctcgc ccaagatgga acgtcatggc      3900
     acttcaaccc tccagctgct cctcacatgg gaggaaaatg ggaggcagta gtgaagtcga      3960
     tgaaacacca tctccatcgg actatgggag agactcttta cacgcttgaa gagatcacga      4020
     cgttgctcac tcaaatcgaa gcaatactta actctagacc actagaacca cttaccaatg      4080
     atccagagga tttagacacg ctcactccag gacacttctt agtcggatcg gcgctaaact      4140
     caccaccaga gccgtgcttg ttggatttac ctccagcaag gctcactcgc tggcagctga      4200
     tccaagctca aaaacaaagg ttttggaagc agtggtctac acagtacttg cttagattaa      4260
     actcaatctc caagtggcat actccagctc atgacatcaa gacaggctca ttggtgctta      4320
     taactagtga gactctacca ccaggaaagt ggccgctggc cagagtcgtc gacgtccacc      4380
     caggcaagga tggcctggtt agagtggtga ctctcaagac ctcagtgggc gcgctcagga      4440
     gaccaattca caagttggtg ccactgccgg tctacggctg ttgtcagccg ttgactgacg      4500
     gcgggcggaa                                                             4510
//
ID   BEL-6_CoFl-LTR repbase;    DNA;    INV; 882 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-882
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2283-2283 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 882 BP; 214 A; 178 C; 159 G; 331 T; 0 other;
     tgttggaaat gagagcgacc gacagtaggc ccggcttttg tgtacattgt gtacacttgt        60
     agtctctgtc ggctcaacgc tctgtgcgtg tgcgcttggt cgacttggcg cgctgcaggt       120
     gtgtgtgtgc gtattcacgc ggcaagcttt gtatactgta agcgccagat tatactcagc       180
     tctcgtcgaa gatagactct cttaatttac gttgccaaac tctagcattc aaaggtgcat       240
     acatcacctt aaatgctagt gtaaatcttc tgattaactc tctcaataca gtggacaaaa       300
     ctcagttgtg cagtgcagtg cacttagtgc tttgtttaag ttgctcactg cataatctgc       360
     agaccagctc aaatagttaa tctcatcgaa ctaccagtga ttatcaacag caagattcag       420
     tgaaactctt gtgtatttct acagacagta attgtgtatt tctacagaca gtaattgtgc       480
     atttctacag acaatcgttt ttcgttaatc aatatttcaa tcagttatat tatatcagtg       540
     ctttcatttt cacatttatt tcgtgtaact ttcaaactct cttgcgagct caaggccagt       600
     gcgtgtttac atattgtgtt attcaacttg actcttttct ttctacattc ttcgctttta       660
     tatatttcaa tagttcattg ctttaagact atagacatta tttcttttct cctgtattat       720
     tttgaccttt actatttttg tgaatattaa ctgtgatttt tcttggcctt tgagtgacat       780
     taaaagttgt tattttatgc tgtttaattt tattgtgttt tattgtgtct tcccaatcac       840
     cctatccgag cctagtgtgt gctaacgcat acgcctcgaa ca                          882
//
ID   BEL-6_CQ-I  repbase;    DNA;    INV; 5650 BP.
XX
AC   AAWU01028809;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_CQ_;
KW   BEL-6_CQ-LTR; BEL-6_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5650
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 165-165 (2011).
XX
DR   Genome; AAWU01028809; Positions   43132   37483.
XX
CC   Positions [4665-5249] - Integrase core
CC   'TCAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           240..5648
FT                 /product="BEL-6_CQ-I_2p"
FT                 /translation="MSEFYTPLKNPQNPDDSAFLGFAESTNGNGGNSARST
FT                 RTATKIVELASTVDDPELAKQIKSLARQRDQAMNKLLRIYSSVNVPTPIDP
FT                 AQVKGHATKLQAAYNEYSRFHSEIVALIPEEEMDTQERVYVRFEKYYDFTY
FT                 SVIEKRIMRQPPAPAQVIIHQQPLKAPIPTFDGEYTKWPKFKAMFLELMAQ
FT                 SRDSETIKLYHLNKALVGAAEGALDAKTINEGNYERAWEILNEQFGNQRVI
FT                 VETHIRGLLSLKRMLSESHSELRTLLNECTNHVESLDYLKQPLTGVSELMT
FT                 VHLLTAALDMTTRKLWEQTLKPGELPNYAATIAFLKSQCQVLERCESACPP
FT                 ATTKLTTKQLVPASKVGQRSHAVTASSEEFTEKCDFCGYPHRNYQCNKLNG
FT                 LTKLEKDEKVRALGLCFNCLQRGHRLSSCPSTKTCQKCHKRHHTQLHDDGT
FT                 HPEQETNIAVTEPPADDPGHNFLPTMAIPLAPQSPGTNVTTTCSLSASAPK
FT                 TVLLLTAVVLVTDRDNQAYQCRALLDSGSQANFITEAMANTLGLERKRANV
FT                 PISGINNVKSLARDKVEVQFKSRCSEFCATLECLVTPRVTGTIPTTDIDIS
FT                 GWVLPDGIHLADPQFFKTNKVDMLIDAELFFALMKPGHITLDDDLPELRNS
FT                 HLGWLVTGAYRPARHNEAVQYSHVASLESVEEAIRKFWELEEVPQAATMSS
FT                 EEQRCENHFTSTYSRDRTGRFVVRLPLRENADDVDSCRNLALRRFFMLENR
FT                 LQRNPSLKVQYVDFVREYLQLGHCREVNLADDNPNLKPYYLPHHAVLRPGS
FT                 SSTKCRVVFDASAKSAPTNLSLNDTLLIGPVVQSDIFSIMLRFRQHRYVFT
FT                 ADIQKMYRQIRIHPDDTHKQRIYWREQPNEPLKILELLTVTYGTASAPFQA
FT                 TRSLVQLANEEAENFPVAAKITRSDCYVDDVLSGAPTLNDAIGALNQLKEM
FT                 LARGGFPIHKWCSNSPEVLAHIPEEEREPLKPLADRHVNEVIKVLGLLWDP
FT                 SADQLLIADCSKAATERDPPATKRIIYSEVAKHFDPLGLFSPSILLGKLLV
FT                 QGLWQCKLDWNTPISDNTQARWNELKCELPKLLQIKIPRRVTHDGAVYYEL
FT                 HGFGDASNVAYGANAYIQSVMKDGTVRSRLLATKTKVAPLHSVTIPRKELC
FT                 AALLLVRLICKILDALTVPLRKVVLYSDSEIVLAWLKKHPYQLETFVGNRV
FT                 AQILALSRNFEWRYVRTHHNPADISSRGMLPGELMVCEPFWTGGEYINTAG
FT                 VAQDLPDEILDEDLPELKANVVVMAALIQEPLEIFSKSSSYRRLQQTVAWI
FT                 MRFFDNARKPKAERNYKRHLTVRELRRSTNVVVRVIQHVELGDEIQRVRTN
FT                 TPCKRIGELNPVLNDDGLLRVGGRLKHAKLSDEAKHQLILPNSHPVTHNLI
FT                 RDMHDELLHVGPAGLLSAIRQRFWLIRARSTIRQVTGSCVKCFRTNPSGIS
FT                 QLMGDLPKQRVTPSPVFSITGVDYAGPILVKQGTYRPKVVKAYIAVFVCMA
FT                 TKAIHLELVSDLTTDAFLAALQRFVSRRGLVSEMHSDNATNFHGADNELHR
FT                 LYEMFCNQAEIDRIVRFCQVKEIQWHFIPPDSPEFGGLWEAAVKCTKTHLK
FT                 RVIGNNTLNFEEMTTILCEIEAILNSRPLFAISGDPADPEVITPAHFLIGR
FT                 PMIAVPEPSYQDLKIGRLSRWQHLQLLREQFWRAWSRDYLSSLQPRKKNRI
FT                 TTTNVRPGMIVLLQDKNRPPLHWKLGRITAVHPGSDNLVRVVEVFSEGSTY
FT                 TRSITKLSILPIEENQGQPDQRGKDDLNCPGE"
XX
SQ   Sequence 5650 BP; 1499 A; 1562 C; 1440 G; 1149 T; 0 other;
     aatggtccgt tacgatccgg attgcggctt ctgagtgcgt gttgtccgag gacaattggg        60
     ttaaagtgcg aaaaaataaa ctcaaaaagt gaaatttccg tgcgaaaact aaacgaattc       120
     gaacaatcga acgtgtaaaa aaaaaaatat ccctgccaaa aggtagaaca gtgaaaataa       180
     gaatcctgcg caaagcagaa cagtggaaaa aaaccctgca agaaaaaaaa aactgcagaa       240
     tgtcggagtt ttacacgccg ttgaagaacc cgcaaaatcc ggatgattct gcgttcctgg       300
     gatttgcaga atcaacaaac ggaaacggtg gcaactctgc gcgctcgaca agaacggcca       360
     caaaaattgt ggaactggca tcgactgtcg atgaccctga actggcaaag caaatcaagt       420
     cacttgcacg ccagcgggac caagcgatga acaagttgct tcgtatttat tcaagcgtaa       480
     atgtgccaac cccaattgat ccggcgcagg tgaagggaca cgctacaaag ctgcaggccg       540
     cctacaacga gtactcacga ttccacagcg agattgtggc gctgattcct gaggaggaga       600
     tggacaccca ggagcgagtg tacgtccggt tcgagaagta ctacgacttc acatactctg       660
     tgattgaaaa acgcatcatg cggcaacccc cagctccagc acaagtgatc atccatcaac       720
     agccactcaa agccccgatc ccgacttttg acggcgagta caccaagtgg cctaagttca       780
     aggccatgtt ccttgagttg atggcgcaat ctcgcgactc ggaaacgata aagctttacc       840
     acctgaacaa ggcgttggtt ggagcagccg aaggagcgtt ggacgctaaa acgataaatg       900
     aaggcaacta cgagcgggct tgggaaattc ttaacgagca gtttggaaat caacgggtga       960
     tcgtagaaac tcacatccgt ggcttgttgt cccttaagcg aatgctctcc gagtcgcaca      1020
     gcgaactacg cacccttctc aacgagtgca ccaaccatgt tgagagtcta gactacctga      1080
     aacagccact gactggagtg tccgagttga tgaccgtcca cttgctaacc gcagctttgg      1140
     acatgactac tcgcaagctg tgggagcaga cgctgaagcc tggtgagttg ccaaactacg      1200
     ctgcgacaat tgctttcttg aagtcccagt gccaagtact ggaaagatgc gaatccgcct      1260
     gtccgcctgc cacaacgaag ctaacaacta agcagctggt cccggcgtcg aaggtcggcc      1320
     aacgatctca cgcggtgacg gccagctccg aagaattcac cgagaagtgc gacttctgtg      1380
     gatacccgca tcgaaactac cagtgcaaca agctcaacgg actcaccaag ctggagaagg      1440
     acgagaaggt tcgagctctt gggctttgct tcaactgtct ccaacggggc catcgcttga      1500
     gtagctgtcc ttcaacgaag acgtgccaga agtgtcacaa gcggcaccac acgcagctcc      1560
     acgacgacgg cacgcatccc gagcaggaga cgaacatcgc tgtgactgaa ccgccagccg      1620
     acgaccctgg gcataacttc ctgccgacga tggcgatccc gttggcaccc caatcgcctg      1680
     gaaccaacgt cacgacaacc tgctccctga gcgcatctgc ccccaaaaca gttctgctgc      1740
     ttacagcggt ggttctggtc accgatcgcg acaatcaagc ttaccagtgc cgagccctct      1800
     tggacagtgg ttcccaagca aacttcataa ctgaagccat ggccaacacc cttggcttgg      1860
     aaaggaaacg tgctaacgtt cccatctctg gaatcaacaa tgtgaagagt ctggccagag      1920
     acaaagtgga ggtccagttc aagtcccgat gcagcgagtt ttgtgctact ctcgaatgct      1980
     tggtgacccc cagagtcact ggcaccatcc cgacgaccga catcgacatc tccggatggg      2040
     tgcttcccga cggcatccac cttgccgacc cgcaattctt caagactaac aaggtggaca      2100
     tgctgattga cgccgagttg ttctttgcgc tgatgaaacc aggacacatc acactcgacg      2160
     acgatttgcc tgaactacga aactcgcacc taggatggct ggtcacaggt gcctaccggc      2220
     ctgcaagaca taacgaagct gttcaatact cccatgtggc atcacttgag tcggtggaag      2280
     aagcgatccg caagttctgg gagcttgaag aagttcctca agccgccaca atgtcctctg      2340
     aagagcaacg ctgtgaaaac cactttacat ccacctactc aagagaccgt actgggcggt      2400
     ttgtggttcg attgccgctt agggagaacg ccgacgacgt ggacagctgc cggaatctag      2460
     cattgcgacg cttctttatg ctagaaaacc ggctgcaacg taacccttcc ctgaaggtgc      2520
     agtacgtgga ttttgtgcgc gagtatctcc agctcggcca ctgccgggaa gtaaatttgg      2580
     ctgacgataa cccgaatttg aagccatatt atttgccgca tcacgcggta cttcgccctg      2640
     gcagctcgtc cacgaagtgt cgagttgtct tcgacgccag cgcgaagtcg gcaccgacaa      2700
     atctgtcact caacgatacg ctgctgattg gcccggtggt acaaagtgac atcttctcga      2760
     ttatgctccg ctttcgccaa catcggtacg ttttcacggc ggacattcag aaaatgtacc      2820
     ggcagattcg aatccaccca gacgacacac acaagcagcg gatttactgg agagagcagc      2880
     cgaacgagcc gttgaagatt cttgagctgc tgaccgtaac ctacggcaca gcttcggctc      2940
     ctttccaggc tacccgaagt ttggtccagc tcgccaacga agaagcggag aactttccag      3000
     tagctgcaaa aataacaagg tccgactgct acgtggacga cgtgttgtca ggtgcaccaa      3060
     cactcaacga cgccatcgga gccctaaatc aactgaagga gatgctggct cgaggtggat      3120
     tcccgatcca caaatggtgc tccaactcgc cagaggtcct agcgcacatc ccggaagaag      3180
     aaagagaacc gctgaaacca ctcgccgatc gacacgtcaa cgaagttatt aaagttctcg      3240
     gcctgctgtg ggatccgagc gccgaccaac tgttgattgc tgattgctcg aaggcagcaa      3300
     ctgaacgcga tccgcccgct acaaagcgaa tcatctactc cgaggtggcc aagcacttcg      3360
     atccgctcgg gctgttctca ccttcgattc tgctgggaaa gttgctggtt caaggcttgt      3420
     ggcaatgcaa actagattgg aacacaccga taagcgacaa cacacaagca aggtggaacg      3480
     agctgaaatg cgagctgccc aaactgttgc agatcaaaat tcctcgccgc gtgacgcacg      3540
     acggcgcagt ctactacgaa ctacacggat ttggagatgc gtcaaacgtg gcgtacgggg      3600
     cgaatgccta cattcaaagc gtgatgaaag acggaaccgt cagatctcgc ctactagcga      3660
     ccaagaccaa agttgcccct ctccactccg tcacgattcc acgcaaggag ttgtgcgctg      3720
     ccttgttgct cgtacgattg atctgcaaaa ttctggacgc tcttaccgta ccccttcgca      3780
     aggtagtctt gtactccgac agcgaaatcg ttttggcatg gttgaagaag cacccgtacc      3840
     agctcgaaac gtttgtaggc aatcgcgtcg ctcaaattct agccctatcc agaaacttcg      3900
     agtggaggta cgtccggaca caccacaacc cagcagacat ctcatctcgt gggatgcttc      3960
     ccggagagct catggtttgc gaaccattct ggaccggcgg agagtacatc aacacagcgg      4020
     gcgtcgctca ggatctaccc gacgaaatcc tcgacgaaga cctgcccgag ctgaaggcca      4080
     acgtggtggt gatggcggcc ctcatccaag agccgctaga gattttcagc aagagcagct      4140
     cgtaccggcg tcttcagcaa acagtcgcat ggataatgcg attcttcgac aacgctcgga      4200
     aaccgaaggc agaacgcaac tacaagcgac atctcaccgt acgagagcta cgacgttcaa      4260
     ctaacgtcgt ggtgcgagtg attcagcacg tcgaacttgg agacgaaatt caacgagtga      4320
     gaacgaacac gccatgcaag cggattggag aactgaaccc ggtcctcaac gatgatggct      4380
     tgctgagggt tggcggacga ctgaagcatg ctaaactttc cgacgaagcg aagcaccagc      4440
     taatcctccc gaattcccat ccggtcacgc acaatctgat tcgggacatg cacgacgaac      4500
     ttctccacgt tggacctgct gggctactgt ctgcaatcag acagcgattt tggttgatcc      4560
     gggcccgttc gaccatacga caagtaactg gatcctgtgt gaagtgcttc cgtacaaacc      4620
     cgtctggaat ctcgcaactg atgggtgatt tgccaaaaca acgagttacg ccgtcacctg      4680
     tcttcagcat cactggagta gattacgccg gcccaattct ggtgaagcag ggaacctacc      4740
     ggccgaaggt ggtgaaggcg tacatcgcgg tcttcgtttg catggcaacg aaggccattc      4800
     atttggagct ggtgtccgat cttacgaccg atgcatttct cgcagcactt caacgattcg      4860
     tgagccgcag gggactggtt tcagaaatgc actccgacaa cgcgacaaat ttccacggcg      4920
     ccgataacga gcttcaccga ctgtatgaaa tgttctgtaa tcaagccgaa atcgacagga      4980
     ttgtgcgttt ctgtcaagtg aaggagatcc agtggcactt catcccgcca gactcgcccg      5040
     agttcggtgg cctgtgggag gcggccgtca agtgtacgaa aacgcacctg aaacgagtga      5100
     ttggaaacaa tactcttaac ttcgaagaga tgaccacaat actctgcgaa atcgaagcca      5160
     ttctaaattc acgaccactt tttgccattt ctggagaccc ggctgatcca gaagtgatta      5220
     ctccggctca tttcctaatc ggccgcccga tgattgcagt gcccgaacca tcctatcagg      5280
     acctcaaaat cggccgattg agtcgctggc aacaccttca gttgctccgg gagcaatttt      5340
     ggagggcttg gtcccgcgac tacctgagca gcttgcaacc aaggaagaag aatcggatca      5400
     ccaccaccaa cgtccgaccg ggaatgattg ttttgctgca ggacaaaaat cgaccaccgc      5460
     tgcactggaa gcttggtcgt ataaccgctg tccatccggg ttcggataac ctggtccgcg      5520
     tcgtagaggt gttcagcgag ggcagtacgt acacccgatc gatcacgaaa ctgtcaattc      5580
     tacccatcga ggaaaaccaa ggccaacctg atcagcgagg aaaggacgat ctcaactgcc      5640
     cgggggagga                                                             5650
//
ID   BEL-6_CQ-LTR repbase;    DNA;    INV; 334 BP.
XX
AC   AAWU01028809;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_CQ_;
KW   BEL-6_CQ-I; BEL-6_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-334
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 166-166 (2011).
XX
DR   Genome; AAWU01028809; Positions   37482   37149.
XX
SQ   Sequence 334 BP; 83 A; 87 C; 84 G; 80 T; 0 other;
     tgttccgtac ggaagttctt cagcgtgtac cagcgtcgaa cccctcggtg ctgagtgcaa        60
     gagtgtgcgt tcataacgga agcgtgctgg caaccgggag ggagtttgac gccatgattc       120
     gagcttgagc aaccgacgcg accgtaccgc gaccgcaaaa agagaaattt tctagagaaa       180
     taaaggtgaa atagtgttat attttgctgc cgcttactct cgattccgat ccaaagtgat       240
     ttgcctcatt gtccgcccga agtgaaccgc acccagaagt tcgccgtcta tacagtccat       300
     gtgtattctc cgaacattcg attccgcccg aaca                                   334
//
ID   BEL-6_DAn-I repbase;    DNA;    INV; 7483 BP.
XX
AC   AAPP01017055;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DAn_;
KW   BEL-6_DAn-LTR; BEL-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7483
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017055; Positions   45503   38021.
XX
CC   Positions [4217-4798] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..5161
FT                 /product="BEL-6_DAn-I_1p"
FT                 /translation="MEDFLCNRTEGRDLSTHIRQHMRDLWKEIVTGYHDLI
FT                 DLEPTLKNDGHTDDRFQVVRAEYFSFLNEESQSTSASTQKPTMASPFAIPP
FT                 VDIPKFDGDYLKWPRFCDIFTELVHNQDYSDAVKFRHLENHVIGEAKNLIS
FT                 TTFGGHASYQDTWQRLKARYQNERILIKSTLATLFAHPKTNGSADQLRSLH
FT                 DAVLRTITALHALNISTVGWDPILIHIIEEKLDSHTLSCVELAITNPTCPQ
FT                 SLKQMLDHLERQATSQVTLQKTAANNGFRSSTQATVEKCIICTHSNHRLQT
FT                 CQKFLDMTPNERMQRITRMNACTNCLSLYHTVNSCKSRFSCHVCKRNHHTM
FT                 LHNTSTRTSASTTCQSTAPYVLLATAQVEVQGPTEARHPCRAVFDSGSQVN
FT                 LISQELPDKLGVQSAPSDLTIRGIGGTKQATSRTVLNMFSLTTNFKTQLVA
FT                 YVLPEIMTNQPSESIMRPKNIPPELRLADPKFNQPQGIELLLGAECLPQLI
FT                 EPLHINLGQGQPLLQRTPLGWIISGPATTSSVVHTNPPVSNALSTMEEPKI
FT                 DRLLEQFWKLDTLDENKRGLTTDEKLCEQHFIENIERRADKRLSVRLPFKE
FT                 DPQTLGNSLPMAYRRFYALEKRLQRDPYLQKQYVQFMDQYEELGHMTRLTT
FT                 KQLTSNHYVIPHHCVLKPDSSTTKLRVVFDASATTTSGKSLNNLLRIGPTV
FT                 QSELLFILLRFRSYQYVFTSDVEKMYRQIMIHPDDRKFQIILWRRNLMEPL
FT                 KYYQLNTVTYGTATAPYLATRCLQYLSDTAPEHLSQGAAALRQGCYVDDCL
FT                 TGGHTIDEALIKRDQLIQLLGEAKFKLRKWCANHPALLADIPEEDQEMTLD
FT                 FSNFTEQTVKTLGIIWDPPGDWLQGRAATEDTGVITKRIVCSELAKIFDPL
FT                 GLFGPVVTTAKIRMQRLWELKIDWDTELGSELTQQWQTFRHDVQVLTTIKI
FT                 PRCVLPADTSGGIQLHVFADASEAAYGAVAYLRARDKTGNIITRLLCSKAR
FT                 VAPLMKQTLPRLELCAAVLAAQVTNRVKTDLNISLEAIHLWSDSEIALKWI
FT                 NATALSFQTFVANRVAQIQELTDPEWWRHVASTDNPADILSRGCTAAQLRD
FT                 SRLWYAGPPFLGQDPESWPKFHSTGIYNANEDQERKKEAVCSVVNKSDDWM
FT                 EHINHHGSFDTMLQIIGRMRRFIFNCRNPEKKRTGPLSPGELNEALGVIIR
FT                 EIQAQHFPTSMLQLKKTKTVGPNDPLRALDPFIDTDGIIRVGGRLQNAALS
FT                 YDATHPMLLSPTHPLTILLFQWKHQQLAHCGPQALLCNVRQRFWSLRGKEL
FT                 AQKTVSRCVRCCRIRPKLLNQIMSPLPADRVQQHRPFKNCGVDYCGPFWTH
FT                 YKIRGKRPHKVYLAVFCCFSTKAVHLEVVTDLTTQAFLAALKRFCGRRGLP
FT                 SKIYSDNATNFVGAYNELSEVKEAIFAEEAQAMIHKTCAKLSIEFKFIPPR
FT                 APHFGGLREAAVKSAKHLLKRTLYTATLTHEELETIVIDVEAILNSRPLTS
FT                 VSSSPRDLTALTPGHFLIGEPLTASPDIHQSRRRTGLLTRWKRLEHLPKEF
FT                 WTRWSHEYLHELQNRSKWTRSCKTVKIGDLVIIKEDNIAPLNWPLGRIVAV
FT                 HPGKDGEIRVAEIRTTSGNITRAIHRLAVLPINDKKEEPQ"
FT   CDS           6090..7010
FT                 /product="BEL-6_DAn-I_2p"
FT                 /translation="MFHTSVPLVEEDEFTVYRMEPIPQITREGLVITKTET
FT                 GYLAIDDHRKHHFAINQEHLRQCISMTNGIKVCDFKQTLFGPDAHQLPCTM
FT                 AALAKHQAGECKPEPIKGTSYWVQLTEQNAWIFGTTKPITMTYVCSAEKDQ
FT                 VIIEGVGKMTIRQDCVIQSPTFTLLGRAQVNSSGTVKMSGGYVHEWPSQEK
FT                 IKTTEGQLESTLDQLDRLHAEVQGLKTWTKQAQEDVDSETDWNLAHQYSGV
FT                 IMLGIAILVAAWAGYTRCVWKDTSATNQRTIPAQGQGFQLIEQHLAAVTRD
FT                 GHHRRFEVYDPGTSQ"
XX
SQ   Sequence 7483 BP; 2531 A; 1747 C; 1643 G; 1562 T; 0 other;
     gtacctagaa gaacttgtga acaagtatga agcgatattt gccgatggaa ttccatcagg        60
     atcaggcccg tcacaaaagc cccggaaaac aggagaaaat cttgagccaa aggcacaagc       120
     tcaaggaatc gaagaagacc ctcacttaac atctctaaaa cgaagacatg aaggacggtt       180
     agatgatatg gaagactttc tgtgcaaccg cactgaagga cgggacttat ctacacacat       240
     cagacaacac atgagggact tatggaagga aatcgtcacg ggataccatg atctcatcga       300
     tctggagcca accttaaaaa atgatggaca caccgatgac agattccagg tggtccgagc       360
     agagtatttc tcatttctga acgaagaatc acaatcaacg tcggcatcaa ctcaaaaacc       420
     cacaatggct tctccgtttg caataccacc agtcgatatt cccaaatttg acggagacta       480
     cttgaagtgg ccacgattct gcgacatctt tacagagctg gttcacaatc aagactatag       540
     cgatgcggta aaattccgac atctggaaaa tcatgtgatt ggagaggcta agaatttaat       600
     ctccactaca tttggaggac acgccagtta tcaagacacc tggcaacgat taaaggcaag       660
     atatcagaat gaaaggattc tcatcaaatc aacactggcc accttgtttg cccacccaaa       720
     aactaatgga tcagcagatc agctgcgtag cttacatgat gcggtgctta ggacaattac       780
     cgcccttcac gccctcaata tatcaacagt agggtgggat ccgatcctaa tacacattat       840
     cgaagaaaaa ttagattccc ataccctatc ttgtgtagaa ctcgccatca caaacccaac       900
     gtgcccacaa tcattaaaac agatgcttga ccatttagag cggcaagcaa ccagccaagt       960
     tacgctacaa aagacagcgg ccaataatgg ctttcgctca tcaactcaag ctacggttga      1020
     aaaatgtatt atatgcactc atagcaatca tcgacttcaa acttgccaaa agtttttgga      1080
     catgaccccg aatgaaagaa tgcaaagaat aacaaggatg aatgcctgca ccaactgttt      1140
     atccctatac catacagtaa actcatgcaa atctaggttc tcatgtcatg tgtgcaaaag      1200
     gaatcatcac acaatgctgc ataatacatc cacgcgaaca agcgcatcca caacctgtca      1260
     aagtacagca ccttatgtac tactagcaac cgcacaagta gaagtccaag gtcctactga      1320
     ggcacgacac ccatgccgcg cagtattcga ttccggatca caagtgaact taatttctca      1380
     ggaattgcca gacaaactcg gagtccaatc agcaccatcc gaccttacga taaggggcat      1440
     aggaggcaca aaacaagcga cctcccgaac agtactaaat atgttctcat taaccaccaa      1500
     cttcaaaaca caacttgtgg cttacgtact accagaaatc atgacgaatc aaccatctga      1560
     gtcaattatg cggccgaaaa atattccacc agaactgcgt ttagcagatc ccaagttcaa      1620
     tcagccacaa gggatcgagt tactgcttgg ggccgagtgt ctcccacaac tcatcgagcc      1680
     gctacatata aacctagggc aaggacaacc attacttcaa cggaccccat taggatggat      1740
     tatatccgga ccagcaacaa ccagttctgt ggttcacaca aatccacctg taagcaatgc      1800
     actatcaacc atggaggaac caaaaatcga tagactgctc gaacagtttt ggaagttaga      1860
     caccctcgat gaaaacaaaa ggggtctgac cacggacgag aagttatgcg aacagcattt      1920
     tatagaaaac atagaaagga gggcagacaa aagattaagt gtacgcttac catttaaaga      1980
     agatccacaa acattgggaa attccctccc aatggcttat cgccgtttct atgcattgga      2040
     aaagagactt caacgggatc cttatctcca gaaacaatac gtacaattca tggatcaata      2100
     cgaggaacta gggcatatga ctagattaac aaccaaacaa ctaacatcaa accattatgt      2160
     cattccacat cattgtgtac taaaacctga tagtagtact accaaactcc gggttgtatt      2220
     tgacgcgtca gcgacaacga caagtggaaa aagtttaaat aatctattac ggattggacc      2280
     aacagttcaa agcgaattac tattcattct cttacggttc cgatcttatc aatatgtgtt      2340
     tacatcagac gtagagaaaa tgtaccggca gattatgata catccagatg accgaaagtt      2400
     tcaaatcata ttatggagac gtaacctcat ggaaccacta aaatattatc aactaaacac      2460
     tgtcacttat ggcacggcaa ctgctccata cttggccacc cgatgtttgc aatacttgtc      2520
     ggacaccgca cctgagcatt tgtcccaggg tgcggctgca cttcgacagg gttgctacgt      2580
     agatgattgt ctgaccggag gtcacaccat agatgaagca ctaatcaaga gggatcaact      2640
     aatacaactt ttgggagaag cgaaattcaa actaagaaaa tggtgcgcaa accacccagc      2700
     gttattagca gacattcccg aagaagacca agaaatgact cttgatttca gcaattttac      2760
     tgaacaaacc gtcaaaacgc tcggaattat ttgggatcca cccggagatt ggctccaagg      2820
     acgcgcggcg acagaagaca caggagtcat cactaaaaga attgtgtgtt ctgaactagc      2880
     aaaaatcttc gaccctctag gattgtttgg tccagtggta acaacggcaa agataaggat      2940
     gcaacgatta tgggagttga agatcgactg ggacacggaa ctgggttcag aactcaccca      3000
     gcaatggcaa acattcagac atgatgtcca agtcctgaca acaataaaaa ttccaagatg      3060
     tgtactacca gctgacacat ccggaggcat tcaattacat gtatttgcag acgcatcaga      3120
     agcagcatat ggggcagtgg catatttgcg agcaagggat aagacaggca atattatcac      3180
     aagattgcta tgttcaaagg cccgagtagc gcccctgatg aaacagaccc tgcctcgctt      3240
     agaactctgt gcagcggtat tagcagctca agtcacaaac agagtaaaaa ccgatcttaa      3300
     cataagccta gaagcaatac atttatggtc agactcagag attgcattaa aatggattaa      3360
     cgccactgct ttgtcattcc aaacgtttgt ggcgaaccga gtcgcccaaa ttcaagaact      3420
     aacagaccca gagtggtgga gacatgtagc atcaacagat aaccctgcag atattctctc      3480
     cagagggtgc acggcagctc aattaagaga ttcaaggctt tggtacgccg gaccgccatt      3540
     cttggggcaa gatcccgagt cctggcctaa attccactca acaggaatat acaatgcaaa      3600
     tgaagatcaa gaaagaaaga aggaggctgt ttgcagcgta gtcaataaat ctgacgactg      3660
     gatggaacat attaaccacc atggatcatt cgatacgatg ttgcagataa taggaagaat      3720
     gcggcgattc attttcaatt gccgcaaccc agagaagaag agaacgggac cattgtcacc      3780
     aggagagttg aatgaggcat taggagtgat aatacgggaa atacaggcac aacactttcc      3840
     aacatccatg ctacaactca agaagacgaa aactgtaggg ccaaacgatc cactacgtgc      3900
     cctagatccg tttatagaca cagacggaat aattcgagta ggaggacgac tacaaaacgc      3960
     agcattatca tatgacgcca cacatcccat gttattatct ccaacccatc cattgacaat      4020
     actcctattt caatggaaac atcagcaact ggcgcattgc ggaccacagg cattactatg      4080
     caacgttaga caacgatttt ggtcactaag aggaaaggaa ttggctcaaa aaacagtaag      4140
     ccgttgtgtc agatgctgcc ggattcgacc aaaattgttg aatcaaataa tgagtccatt      4200
     accagcagat cgagttcaac aacatagacc cttcaagaat tgcggagtgg actactgcgg      4260
     gcccttttgg actcactata aaatccgagg aaaacgacca cataaggtgt acctagccgt      4320
     gttttgttgt ttttcaacca aggcagtgca cctagaggtg gtaaccgatt tgacgaccca      4380
     agccttcctg gcagcactaa agagattttg cggacgcaga ggactaccat caaaaatcta      4440
     tagtgacaac gcaacaaatt tcgttggagc ctataacgaa ttatcagaag taaaggaagc      4500
     aatcttcgcc gaagaagcac aagcaatgat acacaagact tgcgcgaaac tgagcatcga      4560
     attcaaattc ataccacctc gggcacccca tttcggaggc ctgcgggaag ccgcggtaaa      4620
     atcagcaaag cacttattga aacgaacgct atataccgcc acactaactc atgaagaact      4680
     cgaaaccata gtcattgatg ttgaagccat tctaaattct cgcccgttga cgtctgtctc      4740
     ttccagccca agggatctta cggcattaac gccagggcat ttcctgatcg gggaacctct      4800
     tacggcatca cccgacattc accaatcaag gcgacgcaca gggttactca ctcggtggaa      4860
     gcgcctcgaa cacttaccaa aggaattttg gacacggtgg agccacgagt acctacacga      4920
     actacagaat cgatcaaagt ggacaagaag ttgtaagacg gtaaagattg gcgatctagt      4980
     cataataaaa gaagacaaca tcgctccgtt gaactggccc ctcggacgca tcgtcgcagt      5040
     acatcccgga aaagacggcg agatccgagt tgctgaaata cgaacaacgt caggcaatat      5100
     aacacgagct atacaccgac tggcggtgtt accaatcaac gataagaagg aggaacccca      5160
     ataatatcaa aacaaaaaaa aaaaaaaaaa aaaacaaaaa aggggggaac atgcttgtcc      5220
     taacaatgat actcgtcagg gtgatgtccg gactaccatt acccatctcc acaacatcag      5280
     aactgaagac cgtcaaccct gtggtcatca ctccaatcaa caatgtgacc gggaccatcg      5340
     tagaagccac cgataggata gcagtcaaat ctgcggagtg gacactcatc acattctttg      5400
     acctcagcca attggcacaa gaaattgaga ctgtaaaaaa gggtatccaa tccataaaac      5460
     aatggtgctc aacggcatat gaggtttgtc ccacgatcat acaaacgttg cagcaggaag      5520
     tagcagaaat ccaagatgcc gatcagttaa tgcatcatca acgacaaaaa cgcggagcac      5580
     tgaacatcgt tggaaatatc gcggagtact cgcggagtac tcgatgatca atatgccaaa      5640
     cggatggaag agattattag caaactacga gcccaagaag gcgtcacaca taaaatagtg      5700
     gagaaccaga cgtcaattct ggacacaacc atcaacatta tgaggaggac gacgatcgaa      5760
     actcagaaga ggatgcagga cttagaagcc agtctagcca gaatcaagat aagaagccat      5820
     gcggcggata gatatcttcc gcatgcagtc tccgaattgg tcgtcgtagc aaatcacatt      5880
     cggcgggtcc aggatgctgt attgaacgtg ttaatcggaa ggaaggaaaa ttaagccctg      5940
     cattggtgtc agtggaacaa gtaaaacagg tgatcacaaa aatacaaaca cacctgccac      6000
     cgggaagacg attacccatc gccagtgaaa cagcacgaga cttatatcga ctggcgacca      6060
     ctagagtaca agaaaccgag gatttattga tgtttcatac aagcgttccg ttagtcgaag      6120
     aagatgaatt cacagtatat cggatggagc caattccaca aataacgaga gaaggcctgg      6180
     tgataaccaa gacggaaaca ggatatctag caatagatga tcatcggaaa caccacttcg      6240
     cgatcaatca agaacacctt aggcagtgta tcagcatgac gaacggaatt aaggtatgcg      6300
     attttaagca gacgctcttt ggcccggacg cccatcaact cccgtgtaca atggcagcct      6360
     tagcaaaaca tcaggcagga gaatgtaagc cagagccaat caagggaacc agttattggg      6420
     ttcaattgac agagcaaaat gcttggattt ttgggaccac gaaaccaata acaatgactt      6480
     acgtctgctc ggccgaaaag gatcaagtca tcatcgaagg cgtaggaaaa atgacaatca      6540
     ggcaagattg tgtgatccaa agtccgacct tcacgttatt gggacgagcg caagttaact      6600
     catcaggaac agtaaagatg tcaggagggt atgtgcacga gtggccatca caggaaaaaa      6660
     taaagacaac agaaggtcaa ttggagtcaa cgttagatca gctagaccga ctacatgcag      6720
     aggtgcaggg attgaaaaca tggacgaagc aggcacagga ggatgtggac agcgagacag      6780
     actggaatct ggcgcatcaa tactccggag taataatgtt aggaatagca atcctcgtag      6840
     ccgcatgggc aggatacaca cggtgtgtct ggaaagacac ctcagcaacc aaccagagga      6900
     cgataccagc ccaaggacaa gggttccagc tgatcgaaca acatctagca gcagtaacac      6960
     gggatggaca tcacaggaga ttcgaagtct acgacccagg gacgtctcag taaaaggcaa      7020
     gcaagaaaaa catagttata aggaaaattt attaagttaa gaagcatcgc catcaatggt      7080
     acccatcgaa gagtgaccac tatcagtaga aaggttgtca tcactatccc aagccgaacg      7140
     acgactaagg cgcctccggg caattcggcc agctggacgg aactgcacga gaatcaggtc      7200
     acgatcctcc atccctagag aggcaggggt accgcggcga ggcatgatac ggccagcgta      7260
     ccagaagtgg acatcggagt tacgcaatcg aagactgcga caatattcat ccataaattt      7320
     cgatatgcag gagtcccgtt cgtgatagga ccatttcgtg cgaccgtaat acggaccaat      7380
     aacctgaaag aagagcaacg acatgatcga cagagatact gaaagtggtt cacaaaatga      7440
     cataacagcc tctattattg agtacctcaa tgggggggga gaa                        7483
//
ID   BEL-6_DAn-LTR repbase;    DNA;    INV; 714 BP.
XX
AC   AAPP01017055;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DAn_;
KW   BEL-6_DAn-LTR; BEL-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-714
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017055; Positions   38020   37307.
XX
SQ   Sequence 714 BP; 222 A; 194 C; 137 G; 161 T; 0 other;
     tgttggcacc tattgccaag acctactacc ctagatacac actagtaatt tgatccaata        60
     cacatcagca tgtggcaata caacccacta acctattaag tacacctagt aataattagc       120
     aataagcata aaacaatatt caacctaata acccagcact agtagacggc gccgcaagaa       180
     gaatgaccaa ctgaccaaag caagcaaaaa accagcgagc taagccgaaa tgcatgtaca       240
     agcagcacat gaccaaacaa tctgagtcag cagactcaga ggtggttaac cctgacgtcc       300
     ataacattga ccttccttag atttaagtat gtatacttta gcatcttata taagagttgt       360
     tcttctgaaa taaagagttg cgaaatcaga accactcgtc tcgttactca gtgttgaacc       420
     tccggcactt aaaactgacc tatttcacgt gatcctgtgt caaacggttc acaaggtagg       480
     acgctctacc attatctact tcgcgtggat ccagtgtaac cggaccacaa gtagaatccg       540
     cggcatacca gtctacttcg agtgttgctc ccgtgaaacg gaccgccagt agaccccgcg       600
     ctacctaatt cctccgagtg ttgctcccgt gaaacggacc acgacgagat cccgcggcat       660
     accagtctag ttcgagtgtt gctcccgtga aacggaccgt caacagaccc cgca             714
//
ID   BEL-6_DAzt-I repbase;    DNA;    INV; 5704 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5704
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 771-771 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           479..5701
FT                 /product="BEL-6_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MAEXNDLSENRVSFYKRKAQSIYDKAALLQETIAGDE
FT                 SNEDALSVHLEYLEKMSDLFNTTHSNLEELDVSEIGSDLSNKFDVLVMEIK
FT                 VCIRSRLRSAIGNMPHHSTIHPDFNVTASGNVRPRYHIPDIKLPTFRGGYT
FT                 EWANFFTMFNTIIGQEAVLSRIEKFQYLRSCLDGPALEAVRSLEVTEGNYD
FT                 IALDILSNRFNNKRLIFQAHVAEMLKHEKVEDGSTRKLRTLSDKVHSHMRA
FT                 LKSMGNMEEIAGCIIVHSMYKYLDTESRNKWEELSPSNVIPTWDHFSTFLE
FT                 KRCQAMEAKDQAMLIDPHSNQVGKHKRLINSKNSLVATNTLGSECVFCNNK
FT                 EHNIYSCTRFGNLSPSLRLKEARKLRVCFNCLKKGHRNTSCSSGCCRTCGG
FT                 KHHSLLHINSPLPTSVTTEPTNATMSYTQTDSRSDPSLQNSLVAASLPFSP
FT                 PAQNLSSDVVLLATTVIMIKSRYGDLIPCRALLDSGSQINLITSRLAQTLQ
FT                 LKRTKGSVSVSGIGAESAFHTEGSVNLVIRSRTSDYCTSLTALVAPRITGN
FT                 QPASSFDISKWNLPSNISLADPNFNKSQRIDVLIGASLFYDILCVGQIKLD
FT                 KGLPMIQKTRFGWVVTGGGHYSHNSVLLAASSSTELSHNPTVGMDELVRRF
FT                 WEVENCHGPAIEATKEEIACEEHFKKHFCRLPSGEYSVQLPFKMSDSLLGD
FT                 SYQQAYRRFLNLERKLGRKPLLKAQYAEFIKEYLDLNHMSPVKSDSLKRCK
FT                 FFLPHHCVVREDKTTTKLRVVFDGSACTSTGYSLNDILMSGPTIQPKLVTT
FT                 LLRFRTFPVALTGDICKMYRCVRVLPQDSFLQCILWRDSPHEEIRAFKLDT
FT                 VTYGTKPASFLAVRSMHQLAADERASYPIGSKVVLQDFYVDDLLTGGDTTN
FT                 EVLEIIRQVSGLLAKGNFKIRKWCSNDASLLNQIPSEDRETFVKFTDGSDV
FT                 TKTLGLAWNPTSDELLFAFCPNQVPSKPTKRVVLSTIARFYDPLGLIGPVI
FT                 TRAKIFLQQLWKEKLNWDESLPVSLRTTWIDFIQQFDSMQQISFPRLSFLQ
FT                 SSNLEIHGFCDASMSAYGACIYTVSQSVNGVKANLLCSRSRVAPLKTITIP
FT                 KLELCGAALLAQLMHEVYLMNFNCSYYCWCDSTVVLAWIKNQPSNFNVFVA
FT                 NRLSVIQELTSGMSWLHVPTDLNPADILSRGSLPAELIHSHLWNHGPPYLT
FT                 ASKDQWPSTPALPEPVLEARKTILVTNFASKYFVEESKFVNSFPKMQRIFA
FT                 YVCKFIHRQRFKITVEDLRLGTELLLRLTQQSRLLNEIRALESRKDIKASS
FT                 PIASLSPFLDDCGLLRVGGRLKNSTLDFEARHPIILPRNHSITSALIRHLH
FT                 EKHLHAGPQSLLXIIRQTYWPIGGRKTVAHVIQKCVRCFRVKPRTLEQIMA
FT                 DLPVDRVSESRAFLVTGVDYCGPFLYKSEIRNRPPIKCYMSIFICFSTKAV
FT                 HIELVKDLTTSAFLSALRRFICTRGRPIRIWSDNATNFVGARNELAELKSL
FT                 FLSDNHQEAVHQACLNDCIDWRFIPPRSPHFGGLWEASVKAAKHHLRRSLG
FT                 SSLLGFDELRTLACNISAIINSRPLFPLSENPSDLDVLTPAHFLVGAPITT
FT                 FLEPDLVHLNVDRLDRWQKVTQLQQIFWSRWRQSYLSSLQERAKWRTRNPE
FT                 LHVNDVVLVKDENYPPLKWPLARIVELIPGADGVSRVALIRMATGVSRRAL
FT                 AKLCLLPLRDEVKGLDPSTGG"
XX
SQ   Sequence 5704 BP; 1518 A; 1343 C; 1237 G; 1601 T; 5 other;
     tttggtgacc ccgacgtgat cgtcattaat watattacta aaaacaatta aaattcgttt        60
     aaagtgcgaa ctaaatctaa cctttctgtc gcgaagtttt cgtctcggcg cttgcttgct       120
     cacaawcacc aatacatcta cgcacagcaa cggctttgat ttcggtgcac ttgcgcacat       180
     accgacaatc aaacgggtca ttctcctatt cttctttgtg cctgctcgct gctgctgtcg       240
     gtgcatttgc gcgcacaagc cgaaaatcaa acggatcgtt ctcctattct tctttgtgca       300
     tgctcgctgc tgctgtcggt gcatttgcgc gctcaagccg aaaatcaaac ggattgttct       360
     cctattcttc tttgtgcctg ctcgctgctg cwttcggtgc atttgcgcgc acaagccgaa       420
     actctaacgg atcgttattc agttcttctt tgtgcctgct tgctgctgct tgcctaatat       480
     ggctgagwcc aatgacttgt cggaaaacag ggtgtctttt tacaaacgaa aggcacagtc       540
     aatatacgac aaagcagcat tacttcagga gacaattgca ggggatgaaa gcaatgaaga       600
     tgcgctaagt gtccatttag aatatttgga gaaaatgtcc gatttattta atacgactca       660
     ttccaattta gaagaactcg acgtaagcga aattggcagc gacttaagca acaaatttga       720
     tgtcttggtc atggaaatca aagtttgcat ccgctcaaga ctgcgcagtg ctatcgggaa       780
     catgccgcat cactcaacga tacatcctga ctttaatgtt actgcctccg gaaatgttcg       840
     gccacgatat catattcctg atataaaact tcctacgttc cgtggaggct acactgagtg       900
     ggcaaacttc ttcactatgt ttaacacaat tataggtcag gaggccgttt tatcaaggat       960
     tgagaagttt cagtacctgc gatcgtgttt ggatggacct gcattggaag ctgttcggtc      1020
     tttggaagta acggagggca attatgatat cgcgttggat attttaagca atcgtttcaa      1080
     taacaaacgt ttaatctttc aggcacacgt cgctgagatg ctgaagcatg agaaggttga      1140
     agatgggtca actagaaagc tgcgtacctt atcggataag gtgcattctc acatgagagc      1200
     gctaaagtcg atgggtaaca tggaggaaat agcaggttgc atcatcgttc actccatgta      1260
     taagtatctg gacaccgaaa gcaggaacaa atgggaagaa ctgtcaccgt ccaacgttat      1320
     accgacctgg gaccattttt cgactttttt ggaaaagaga tgtcaagcca tggaggcaaa      1380
     ggatcaagct atgttgattg atccccatag taatcaggtt ggaaaacaca aaagattaat      1440
     taactccaaa aacagtcttg ttgctacaaa tacccttgga tcagagtgcg tattttgtaa      1500
     taataaagag cacaacattt acagctgcac tcggtttgga aacctttcgc cttctttgcg      1560
     ccttaaagag gcaaggaagc ttagagtgtg cttcaactgt ttgaagaagg gacatcgtaa      1620
     cacctcctgc agttcaggtt gttgccgcac atgcggtgga aaacatcatt cacttttgca      1680
     tatcaacagt cctctgccga cgtcagttac aacggaacca acgaacgcca ctatgtcgta      1740
     tactcagacc gactcacgct cagaccccag tcttcagaat tctcttgttg ccgcttcatt      1800
     acctttctcg cctcctgctc agaatcttag ttcagacgta gtgcttctcg ccacgacagt      1860
     catcatgatt aagagtcgat atggtgatct tattccttgc cgtgctcttc tggattccgg      1920
     ctcacagatt aacttaataa cctctcgctt ggctcagacg cttcaactga aacgaaccaa      1980
     aggttcagtc tcagtatccg gtattggtgc ggaatccgca tttcatacag aaggttcggt      2040
     caatttggtc attcgatcca ggacttcaga ttactgcacg agtctcacag ctcttgttgc      2100
     tccacgcatc acaggaaacc agcccgcttc ttctttcgat atatccaaat ggaatttgcc      2160
     atccaatatc agccttgctg acccgaattt caacaaatct cagcgcatcg atgtgcttat      2220
     tggagctagt ttattttatg atatcttatg cgttggacag attaagttgg acaaaggcct      2280
     tccgatgata cagaaaacgc gtttcggttg ggttgtaaca ggtggaggtc attattccca      2340
     caactctgtg ctcttagctg cctctagttc gactgaattg agtcacaatc ccaccgtcgg      2400
     tatggatgaa ctagtgagac gcttctggga agttgaaaat tgccacggcc ccgccataga      2460
     ggctacaaag gaggaaattg cttgcgagga acattttaaa aaacatttct gtcgacttcc      2520
     aagtggcgag tacagcgttc aattgccctt caagatgagt gacagtcttc ttggagattc      2580
     atatcaacaa gcatatcgga gatttctcaa tttagaacgc aaactgggac gcaagccact      2640
     tcttaaggcc caatacgccg aatttataaa ggagtatctc gatttgaatc atatgtcccc      2700
     tgttaaaagc gactcattaa aacgatgcaa attctttctt cctcatcact gcgttgtaag      2760
     agaggacaaa accaccacaa aactccgggt agttttcgac ggatccgcgt gtacatctac      2820
     aggatattcc ctaaacgata tattgatgtc gggcccaact attcagccga agttagtaac      2880
     gactcttctc cgatttcgta cctttcccgt agccttgact ggcgacattt gtaaaatgta      2940
     tagatgcgtc cgtgtcttgc cccaggatag ttttctgcag tgcatattgt ggcgcgattc      3000
     accccacgaa gagatacgag catttaaact ggataccgtc acctatggaa cgaaaccagc      3060
     atcatttcta gccgtacgtt ccatgcacca gctagcagcc gacgagcgtg cttcttatcc      3120
     aattggatct aaggttgtgt tgcaggattt ctacgtggat gacttgctaa cggggggaga      3180
     cactacaaat gaggttcttg aaataattcg ccaggtgtca ggactcttag caaaagggaa      3240
     tttcaagatc agaaaatggt gctccaacga tgcatcttta ctaaatcaaa tacccagtga      3300
     agatagggaa acatttgtaa aattcactga tggcagcgat gtaaccaaga cgctaggttt      3360
     ggcatggaat cccacttcgg atgaactatt gtttgctttt tgccccaatc aagtcccttc      3420
     gaaaccaact aaacgagttg tattgtctac cattgcacga ttttatgatc cactcggact      3480
     tatagggcca gtaattacaa gggcaaaaat atttctgcag cagttgtgga aagaaaagct      3540
     gaattgggat gaatctcttc cagtctcctt acgcacaact tggatcgact ttattcagca      3600
     gtttgactct atgcaacaaa tctcttttcc ccgtttatca ttccttcaaa gcagcaatct      3660
     tgaaatacat ggattttgtg atgccagcat gagtgcatat ggagcatgca tttacactgt      3720
     ttcgcaaagc gtcaatggag taaaggcaaa tcttctgtgt tccagatctc gtgtagcgcc      3780
     actgaagact attaccatac ccaagttgga attatgcggt gcagcgctac tcgctcagct      3840
     tatgcatgaa gtctatttaa tgaactttaa ttgctcgtat tactgttggt gtgactctac      3900
     cgttgtatta gcctggatca aaaaccagcc gtctaacttt aatgtatttg ttgctaatcg      3960
     actgtctgtt attcaggaac tcacatctgg aatgtcatgg ctgcacgtgc caactgatct      4020
     caaccctgcc gatattcttt ctcgaggatc actacctgct gagcttatcc attctcatct      4080
     ttggaatcat gggcctccat atttgacggc cagtaaagat caatggccaa gtacgcctgc      4140
     tcttccagag ccggttttgg aggcacggaa aaccatccta gttaccaact tcgcttcgaa      4200
     atattttgtg gaagaatcga aatttgtgaa ttccttcccc aaaatgcaac gaatttttgc      4260
     atatgtatgc aaatttattc atcgacaaag gtttaaaata acagtggagg atttgcgctt      4320
     gggaaccgaa ctgcttcttc gccttactca gcaatctcgt ctattgaatg aaattagagc      4380
     cctggaatcc cgaaaggaca tcaaagcttc aagcccaatc gcctcgcttt ctccattttt      4440
     agatgattgc ggtttgcttc gagttggagg acgccttaaa aactcaacgt tggattttga      4500
     agcacgacat cccataatac tgccaagaaa tcattccatc acttctgctt tgatacggca      4560
     cctacacgaa aagcatcttc acgcaggacc ccagtcacta ttakccatca ttcggcaaac      4620
     ttactggcca attggtggtc gaaagaccgt agctcacgta atacagaagt gtgtcagatg      4680
     ctttcgagtg aagcctcgaa ctctagagca aataatggca gatcttccgg tggacagagt      4740
     tagcgaatct agggcatttc tagttaccgg tgtggactac tgcggcccgt tcctgtataa      4800
     atcggaaatt cgaaatcggc ccccaattaa atgctacatg agcattttta tatgcttctc      4860
     cactaaagcg gttcacatcg agctagtgaa ggatctcaca acgtccgcgt tcctgtctgc      4920
     tcttcgccgt tttatttgca cacgtggaag accgattcgt atttggtcag ataatgccac      4980
     aaattttgtt ggagctcgga acgaactggc agaactcaag tcgttattcc taagcgacaa      5040
     tcatcaagaa gctgtacatc aagcttgcct caacgattgc atcgactggc gtttcattcc      5100
     tcctagatca cctcattttg gaggattgtg ggaggcttca gtcaaggcag caaaacatca      5160
     tcttcggcgt tcccttggat cctcgcttct tggatttgat gaactgcgca cccttgcctg      5220
     caatattagc gcaatcatta actcaaggcc attgtttcct ctttcagaga acccgtcaga      5280
     tctcgatgtg ctcacgccag ctcatttctt ggttggcgcc cctatcacaa ccttcttgga      5340
     gcctgacttg gtacatttaa acgtcgatcg cctggaccgt tggcagaagg tcacacagct      5400
     gcagcaaatt ttttggtccc gatggcgcca atcttatcta agtagtctac aggagcgagc      5460
     taagtggcgc acccggaatc ctgagcttca cgtcaacgat gtcgttcttg tcaaggacga      5520
     gaactatcct ccgctgaagt ggccgctagc gagaatcgtc gaactcatcc caggagctga      5580
     tggagtatct cgcgtcgcct tgatcaggat ggctacaggt gttagccgaa gggcgcttgc      5640
     caaactgtgt ctcttgcctc tacgggatga ggtgaaaggc ttggatcctt ccacgggggg      5700
     agta                                                                   5704
//
ID   BEL-6_DAzt-LTR repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-466
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 752-752 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
SQ   Sequence 466 BP; 117 A; 118 C; 67 G; 164 T; 0 other;
     tgttcgggcg aggcccgagt gtaattccct tatttatgca ctcttaatcg tattttactt        60
     tccatactct taaaggtttg ctctcttgct ctctcccagc atcttgctct cacttattat       120
     ctattatctg tgcttcttaa ctctcgtttt ctcatctatg cttcctcacg gcttagctaa       180
     gccgacggca gctgcgtctg ctattaatca gttacgaatt accgcttgat atagttggag       240
     cacagacctt ttttgtccca atctattact tggcacgaga ctttctcgct tgcctaccca       300
     agtttagtta actctctact acaaaacata cattgttaaa ggctctggca tcttcggcca       360
     ccctcaccat acaaatcaca tacaataaac tattataacg tttttgaatt caaaactttg       420
     tgaaattctt aatatatagt caacgaaaaa gctcgttgtc tcaaca                      466
//
ID   BEL-6_DBp-I repbase;    DNA;    INV; 5611 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DBp_;
KW   BEL-6_DBp-LTR; BEL-6_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5611
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 634-634 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4602-5192] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..2198
FT                 /product="BEL-6_DBp-I_2p"
FT                 /translation="MSKPKPASTSSAESETMAKGGNADSLFALQKDLHNQL
FT                 NQLQVNFKKDSTSRKTKPYFQLRLSKLNLISQQFNKNHQEFVSAGYPTHPY
FT                 FVDNLADQFEEEFITAFCLISTESETLFPSQLPACAEQQATPVPKILGPGA
FT                 AVQLPKLPVPNFSGKYTDWPAFHDLFMRLVHQNQALSNIQRFHFLKQALPK
FT                 EQDDLPFISRESSSEIKHMLNVTNVCINEFNRLKTNIHSSTQWIVHHLIAR
FT                 LPTTTVQAWEHCLGNSSDIPSFLDLETFLNNRLVSMNIIENRKCSQPTQNS
FT                 TINKSTNYPRQNPKQKGSGFYKGSTFHTTTGTSGPISCVNCKGQHILRRCP
FT                 DFLSKDCFARKRIIDHTKACLNCLSIHHPLSQCGSNKNCLQCGHRHHTLLH
FT                 FPTTYTSSSPIIQNAASESSDPAHPSDSTTVLMATAAQSTRSILLATALVQ
FT                 LHNNSTGQTAVIRALIDHGSEGTLITERAAQLLGLPRHRVTAQITGVGDNS
FT                 KNICRFSTEFSISSCTDPQFHHLVRPAYVLNSITSHLPRSNVNVDTCQHLQ
FT                 GLHLADPTFTRPGRIDALFGVDLIPYLLLPDLRKGASNQPIAQLTQLGWIV
FT                 FGHSNETRANVVTIRCHQTNLDALVKGFFALNALNGKSRSNQL"
FT   CDS           4443..5561
FT                 /product="BEL-6_DBp-I_3p"
FT                 /translation="MHGGAQLTRAIIHRQFWIVNGKQAVKRVLRQCVACFQ
FT                 HRPKPSRQLMGDLPYHRVNPPKRAFEATGVDYTGSIDVKASRFRGHTTYKA
FT                 YIAVFICLASKAIHLELVTGLTAQHFLWALQRFIGRRGFVRHMYSDCGTNF
FT                 IAADKSLRLWSNEFRQEIDRTVVPELTKRYIQWHFNPPHSPNFGGLWEANV
FT                 KAVKSHLHRSFKGYPMTYEQLSTVLIQIEACLNSRPLCPLTADINDLQVLT
FT                 PAHFLIGDSMQSLPTPSDKDKSLNARFVEGQRILRQFWKRWSSDWLSHLQA
FT                 RPKWRQEEENLQVDDLVIIKDDRTGPTDWKLGRVIELHPGADGMVRVATIY
FT                 TGSGTYKRSVSKICRLPISTNPTSKPEEVQ"
FT   CDS           2485..3471
FT                 /product="BEL-6_DBp-I_1p"
FT                 /translation="MITPRGQQYFSSCTLPHHAVVKEDSTTTKVRVVYDAS
FT                 CTTSNGKSLNDILCIGPPLQNDLGGVIIKWRLHRYVFAADIQRMYRCIDMH
FT                 QDDAQFQRILWRNDQNEIAEYSLNTVTFGTASAPYTAIRVIRQLAHDEQHR
FT                 YPLATPVLLNEVYVDDVQTGHNTVHGALEIRNQLIATLKSAGMELRKWASN
FT                 HPQILSGIPDQHMAQKRHVEVNFQETIKTLGLYWSPHEDLYSFKVRFDLPA
FT                 SFTKRSFLSVVARLYDPLGFIVPVTTAAKSILKDIWQWRPETSDKTQPALD
FT                 WDGPLPPILQARCEEFRHHLPNIEQLKIPRWLGHQTG"
XX
SQ   Sequence 5611 BP; 1620 A; 1512 C; 1152 G; 1323 T; 4 other;
     tttgtcacaa catttttggt ggcccatgag gggaacaatc cacacacgac tccgcaatcc        60
     atggtcatct ccgacatttc catcgaaatc gttaatggaa acctaatctc aacacggaac       120
     cattattctc cttttcaact ccttcatnct cttcgacaaa gaggaagcga aaataacgga       180
     atcaaacttt gcatcgcacg tgtcgcgcaa acgcttgccc attgtcgctc tctcactttg       240
     gaagatacgt acgtaagtgt gagtgcatac gcaaaatgag caagcccaag ccagcgagca       300
     cttccagtgc agagtctgaa acaatggcaa agggtggcaa cgccgacagc ttatttgcgc       360
     tccagaaaga tcttcacaat cagctcaacc aactccaagt aaacttcaag aaggacagca       420
     cgtctcggaa aactaagccc tatttccaac tgcgcctttc caaactcaac ttaataagcc       480
     agcaattcaa caagaatcat caagagtttg taagcgctgg ctaccccaca cacccttact       540
     tcgtcgataa tttagcggac cagttcgaag aggaatttat cacagcgttc tgtttaatat       600
     ctacggagtc cgaaacactt ttccccagtc agctaccagc gtgcgccgag caacaagcga       660
     cgcctgttcc taaaatcctc ggccctggtg cggcagtcca acttccaaag ttgccagtac       720
     ctaacttttc cggaaagtat acagattggc cagctttcca tgatctgttt atgcgactcg       780
     ttcaccagaa ccaggcgttg tcaaatattc agcgattcca tttcctcaag caagcactgc       840
     ctaaagagca ggacgactta ccctttatct caagggaaag ctcatcagag atcaaacata       900
     tgctgaacgt aaccaacgta tgcatcaacg agttcaatcg tctcaaaacg aatatccatt       960
     ctagcacgca atggatagtc catcatttga tcgctagact acctacgaca actgtacaag      1020
     cctgggagca ttgcttggga aactccagcg acattccgag tttcctcgac ttggaaacct      1080
     tcctcaacaa tcgcctcgtc agcatgaaca tcattgagaa ccggaaatgt tcacagccca      1140
     cgcaaaactc tacgatcaac aaatcgacaa attatccacg ccaaaatccc aagcaaaagg      1200
     gttccggctt ctacaagggc agcacgttcc acaccacgac tggaaccagc ggtcccatct      1260
     cttgcgtaaa ctgtaagggg caacacattt tgcggcgatg tcctgatttt ttgtccaagg      1320
     attgctttgc ccgcaaacga atcattgacc atacaaaggc atgtctaaat tgcctcagca      1380
     tccatcatcc cttgtcgcag tgtggcagta acaagaattg tttacaatgc ggacatcgtc      1440
     accataccct gcttcacttc cccacgacgt ataccagctc atcaccgatt attcagaacg      1500
     cagcaagcga gagctccgat cctgctcatc cttccgattc cactacagtg ctgatggcca      1560
     ctgccgcgca gtcaactcga tccattttgc tggccacagc tctagtacaa ctacataata      1620
     acagcaccgg acaaactgcc gttattcgag ccttgatcga tcatggctct gagggcacgt      1680
     taatcacaga acgtgccgct cagttactgg gacttccacg tcaccgagtc acagcacaga      1740
     tcaccggggt cggtgataac tcaaagaaca tctgtagatt tagtacagag ttctccataa      1800
     gctcatgtac ggaccctcaa tttcaccatc tggtgcgacc agcgtatgtc ctcaactcga      1860
     taacctctca tttaccaaga agcaatgtca acgtggacac ttgtcagcat cttcagggat      1920
     tacacttggc cgatcccacc tttaccaggc caggccgcat cgacgcgtta tttggagtag      1980
     atctaatacc atatttgttg ctgccagatt tacggaaagg agcttcaaat caacctattg      2040
     ctcaactcac tcaattgggt tggatcgtgt ttggccatag caatgaaaca agggcaaatg      2100
     tggtaaccat tcgttgccat cagactaatc tggatgcact ggtaaagggt ttcttcgcat      2160
     tgaacgcatt gaacggaaaa tctcgatcaa atcagctctg agaggacctt aacagcagaa      2220
     gaacaatggt gtgaggatca tttccagcgt acctgcgccc gacaacccaa tggaaaatac      2280
     ctggtccggc ttccgttaaa aactgaattt gataaggaac aagtcatcgg aaagtctcac      2340
     caaatcgcac tcaatagatt ccacctctta gaacgtcggc taaacagaaa cgacacactt      2400
     aaacaacaat atcactccac cattaaggaa tattttgatc ttaagcaact ctccgaagtc      2460
     actaccgcag aagctcgaca tcaaatgatc actccaagag gtcaacagta tttctcatca      2520
     tgtactctcc cacaccacgc cgtggtaaag gaggacagta caacgaccaa agttcgggtg      2580
     gtgtacgatg catcatgtac cacttcgaac ggaaaatccc ttaacgacat attgtgcatc      2640
     ggcccaccgc tacaaaacga tttaggagga gtcatcataa agtggaggct acatcgttac      2700
     gtgtttgcag cagatatcca acgaatgtat cgctgtatcg acatgcacca ggatgatgct      2760
     caatttcaac gcatcttatg gaggaatgat caaaacgaaa tagccgagta cagcctaaat      2820
     actgtcacct ttgggactgc atcagcaccg tatacagcca tacgcgtaat ccgtcaactc      2880
     gctcacgacg agcaacatcg ctacccatta gcaactccag tcttattaaa tgaagtatat      2940
     gtcgacgacg tccaaactgg tcacaatact gttcatggag cattggaaat acgaaatcaa      3000
     cttatcgcta cactaaaatc ggctggaatg gaactcagga aatgggcatc aaatcatcca      3060
     cagatcttat ccggaattcc tgaccagcac atggctcaaa agagacatgt agaagtaaat      3120
     ttccaggaga ctattaaaac tctgggactt tattggagcc cacacgagga tttatatagc      3180
     ttcaaggttc gatttgacct tcctgcctcc tttactaaac gttcctttct ttcagtagtc      3240
     gctcgcctct atgatccctt aggctttata gttcctgtca ctactgctgc caagagtatt      3300
     ctaaaggaca tctggcagtg gcgacccgag acatccgaca aaacccaacc cgctctcgat      3360
     tgggacggcc cgttaccccc aatacttcaa gcccgatgcg aagaattccg acatcattta      3420
     ccaaacattg aacagttaaa aatacctcgg tggcttggtc accagaccgg tnaaccacag      3480
     tcacaccaac tacacgtctt ttgtgacggc tcctcgcaag cttacgcagc ctgtgtttat      3540
     ctccgaatac aatatccatc cgggagagtg agcacggccc tattgacngc acggagtcga      3600
     gtcacgccca cgaagccgct aacgatccct cgaatcgaac tctctggtgc agtgttggct      3660
     gcacaactgg ntaaatgggt actaacgcag ttttcatcca ccggaattcc cacgtcagtt      3720
     aatttctgga ctgatgcatc aatcgtttta tattggatta aaggaaatcc gacccgttgg      3780
     aagactttcg tctccaaccg aattggcaag attttggaac taagtactac aacccaatgg      3840
     cagcacgtac cttcgggaga aaacccagct tcaaggggtc ttactcctca ccaactagcc      3900
     aggcatgaca tctggtggtt cggtcccgat tggctacggg aggatgagaa tcggtggccg      3960
     aaaaacacgt cctctcctcc ccctgaccaa catcacgaag aaagaagaca accaaccaac      4020
     atcacagcac atgtttgttc acttggcgac tcaatcataa cctcttactc atcatataac      4080
     aaattgttat ttgttatggc ttacattaaa agtatctgca caacttacgc cactcacaag      4140
     aacttcgtaa tgtgggcgcg attcgagtac cagaattacg agaagctcta cataaaattg      4200
     taaggatggt ttagaaagaa acctttcctc aagagatcag ccgagtcttg gcacgaaaat      4260
     ctctatccag gcacagtgcc ctcagcgctc tttgcccgtt tttagacgac tttgggattc      4320
     tgcgactcga aggacgactg aagaacgctc aacaactgtc ccaagcacgg aaaaatccca      4380
     tcatcctacc gaagtcgcat cattttacgg acctcgtcat aaaaaacgcc catctgaaca      4440
     ccatgcatgg gggagcgcaa ctgacccgtg cgatcatcca tcggcagttt tggatcgtta      4500
     atggcaaaca agcggtaaaa agagttctcc gacagtgtgt ggcttgcttt cagcatcgcc      4560
     ctaaaccctc tcgacaatta atgggtgatc ttccatacca tcgtgttaat ccgccgaaaa      4620
     gagcgttcga agctacaggc gtggattaca cgggatccat cgacgtcaag gcctcgaggt      4680
     tcagaggaca cactacatac aaggcctata tcgcagtatt catttgcctc gccagtaaag      4740
     ctatccattt ggagctggtg acaggactca cagcacaaca ttttctctgg gctctccaac      4800
     ggttcattgg acgccgcggt tttgtgcggc acatgtacag cgactgcggc acaaatttta      4860
     tagcagcaga taaatcccta cggttgtggt ctaacgagtt ccggcaggaa atcgaccgga      4920
     cagtcgtccc agaactcaca aagcgctata ttcagtggca ctttaacccc ccgcacagcc      4980
     caaacttcgg aggactttgg gaggctaacg tcaaagccgt aaagtctcat cttcatcgtt      5040
     ccttcaaagg atacccaatg acttatgaac aattatcaac cgttcttatc cagatcgagg      5100
     cctgtcttaa ctctcggcca ttatgcccgt taaccgcgga tattaacgat ctgcaagtat      5160
     tgactccggc tcatttcctc atcggagact ccatgcaatc gcttcctacc cccagtgaca      5220
     aggacaagtc gctcaacgca cggttcgtgg agggacaacg gatcctacgc cagttctgga      5280
     aaaggtggag ctcagattgg ttgtctcacc ttcaggcacg ccctaagtgg agacaagagg      5340
     aagaaaacct acaggtcgac gacctagtta ttatcaagga cgacaggaca ggtccaaccg      5400
     attggaaact aggtcgtgtt atagaattac accctggagc cgatgggatg gtacgagtcg      5460
     caacaatcta tacaggttcg ggtacatata agcgatcagt atccaagatc tgcagattac      5520
     ccatatccac caatcctact tcgaaacctg aagaagtcca ataacacaat agaagctata      5580
     tcatgctgat cccagcattc cgggggcggc g                                     5611
//
ID   BEL-6_DBp-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DBp_;
KW   BEL-6_DBp-I; BEL-6_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-352
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 635-635 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 352 BP; 108 A; 78 C; 71 G; 95 T; 0 other;
     tgtacgggcg ttatttatct tttcgattta tcgctccatc ttcagcgagc ttagaatcca        60
     cccagatttc tccctgcaat cttcgcaaag ctttccttgt ctggtctctc ccctagtaaa       120
     gttattgttt taagaagagt cgtagagcaa gcaaggcgat cggagtagtg gagaaggtca       180
     gagaaaacca cgcgggatta aggctgaccc attcaaataa ttgtaaaact aaccaacata       240
     aattaagcaa gtaaataaaa tgaagttcaa tgcataactg tgtctagtcg tttggattca       300
     aaacccccga gcagaactgt gctcaactat gacattacgc ccatgaacgg ca               352
//
ID   BEL-6_DEl-I repbase;    DNA;    INV; 5856 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5856
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 434-434 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. This consensus is 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..5833
FT                 /product="BEL-6_DEl-I_1p"
FT                 /note="DUF1759, reverse transcriptase, peptidase
FT                 A17 and integrase."
FT                 /translation="MGRIHLGAHGVAGNPGSHGGAANLGATGGAYVPGSHG
FT                 GAANLGATGGAANLGATGGAADLGAHGVAGNPGSHGGAANLDATGGAYVLA
FT                 RMEAQLILALLEAHTFLARMEAQPILAPWSAAIGSGEAFSRGPTGGCHGFN
FT                 VAGETFQRQNRNVGMYGLDNVGGVNGHGLGNNNSNVVQYQHSRSIHPRKLI
FT                 DLPEFNGSPESWPVFSTMFWESSNAYGYTNLENLLRLQKSLIGVAREDVKG
FT                 LLINPANVVYIMERLQFTYGRPEMLINSQMNMVNQIAPVTENNLEKLVVFA
FT                 SKVDNLVIFLKSANATQHLQNPSLIESLVGKMPLSKRVQWIEYSSPIQPYP
FT                 NLDHFSNWLSTMARSIARATIAAPVNIKQTKNDKGLQKSILHSSNNAPKGN
FT                 KKECYQCQGEHYMYNCDKYLKADIAEKWKIIKTLRLCFGCLRRGHTLQACK
FT                 YKRECKKNGCKKSHHTSLHSDDSQKEDNIEPKEATINTIKPASRQLLFKVL
FT                 AVEIMGPNNKIIQTYAFLDEGSSASLINEKLAERLGVLEPKRKLTLNWIEN
FT                 HAKEFLSMECNLRIRSPGADKKWLRIYGNTVPTLDLPLQSVDVEKLTKKYA
FT                 LLRNLSINGYTDADPLILVGINNCHLIANIKSVYLDTNLVAAKTPLGWLIY
FT                 GSTDDPDKGSSRLSVVLHARSKEDNPEQEMHDMISDYFTTENFGVKIPIKP
FT                 LESASISRARDILKNTSKRLDGCYETGLLWKEDVIKFPDSYKMAFQRLQGV
FT                 ENKMHGLGKMEEYDKAIMDFIHKGYAVKMSDREAALVGPRTWYLPHFGVVN
FT                 INKPKKMRLVFDAAATINGISLNTMLLKGPDENPPLTTILFKFRQGQVAVC
FT                 ADIKEMFLQVQVRREDQDSLRFLWRHGNRNAQVDTYKMTVLIFGAACSPCC
FT                 AQYIKNINAQNAESYREEVIDAIQTKHYVDDFVASFKSEEEAFQISQEVKR
FT                 VHNLGKFELRGFVSNSKRIQQSLNVSRNTDLVEPTVRINSESTDKILGMCW
FT                 DSQSDKFVFDLKLNRVDKEIXCGMKCPTKRQLLSLVMSVYDPFGMLADLMI
FT                 HGKILIQDVWRSGIHWNDMLPENLFGKFKLWVLQLEQAKQFQLNRCYLPEF
FT                 LSVKDNIELHIFVDASEQAFAAVAYWRVSCGEGVKLAFIAGKTRCAPLKLL
FT                 SIPRLELQAAVLGTRLMKTILESHDVNVKRTTLVSDSRTVISWIRSDHRQF
FT                 KPFVAHRVSEILETTSESDWRWVPTHLNTADKATKSSKCPKYVVDSEWIGG
FT                 PEFLLAEEDSWPIIDFTFSSDDSIERRKTTMNVHTTQFLDISRFSNYLRLK
FT                 RMMGWSLRFVKNCQNQTQGKEKGELSADELLLAEVKLCKVVQNQVFAEEVA
FT                 ELQSSDSVAKGSSIYTLSPRLNAYGVLVVAGRLDYAVNIPVTQRQPIILPS
FT                 RHSFTELIVKWYHETYHHQNDETIVNEIRRKFWITNLRKAVVRAKSNCQYC
FT                 KNRNAKPITPLMGQLPKERVTPFQRPFSFVGLDYFGPVMVTIGRRQEKRWV
FT                 ALFTCLTIRAMHLELAADLSTDACILCIRNFVNRRGVPISIRSDMGTNFVG
FT                 ADNELKKIKDLFDWDYIKSEMSNKAIDWQFNCPSNPSSGGCWERLVRSTKR
FT                 VLSVTLKEKAPHVETLRSLLIEAENIINSRPLTHLPINIDDPEPLTPNHFL
FT                 LGTTNSTQTPGDVNSFCHRKQYRIAQQLKDHFWSRWIKEYLPTLTRRTKWH
FT                 SRTKPIAVGDIVIICEDNQPRGCWKKGIIISTIPAKDGYIRLAEVETSSGI
FT                 LKRPVSKLAVLDVLGKTP"
XX
SQ   Sequence 5856 BP; 1842 A; 1134 C; 1338 G; 1539 T; 3 other;
     gcgaaatggc tggaacatct actccgacgc caaagagtca accagaatca gaagcagaaa        60
     tggattccga caaggataaa acaatcatgg atttaaaaga gaaggtcccc gaaaatgata       120
     tctttcggaa tatgatggac atgatgaaaa gcataaaaga tgctcaatca gaattaactg       180
     ctcgagttaa tagcctgagt gatggtcagg caaaccaagt catacttatt gaatcccgtt       240
     tggtgaacat gtgtaaaagt gaaatcagat ctgctgtaga aatgttggaa gaaactacaa       300
     agcgtacatt ggcactccca aatcctggct cgcatggagg cgcagctaat cttggcgcta       360
     ttggaggcgc agctgatctt ggcgctcatg gagtcgcagg caatcctggc tcgcatggmg       420
     gcgcakacgt tcttggcgct ctggagtcgc aggaatcctg gctcgcatgg ggcgcataca       480
     tcttggcgct catggagtcg caggcaatcc tggctcgcat ggaggcgcag ctaatcttgg       540
     cgctactgga ggcgcatacg ttcctggctc gcatggaggc gcagctaatc ttggcgctac       600
     tggaggcgca gctaatcttg gcgctactgg aggcgcagct gatcttggcg ctcatggagt       660
     cgcaggcaat cctggctcgc atggaggcgc agctaatctt gacgctactg gaggcgcata       720
     cgttctggct cgcatggagg cgcagctaat cttggcgcta ttggaggcgc atacgttcct       780
     ggctcgcatg gaggcgcagc cgatcttggc gccatggagc gcagcaatcg gttctggaga       840
     agcattcagt cgcggaccta ctggaggatg tcatggcttc aacgttgctg gagaaacctt       900
     tcaacgtcaa aatagaaatg tcggtatgta cgggcttgat aatgttggtg gtgttaatgg       960
     gcatggttta ggtaacaata atagcaatgt agttcaatat cagcactccc gaagtataca      1020
     tccaagaaaa cttatagatt taccagaatt caatggcagt ccagaatcgt ggcctgtatt      1080
     ttcaaccatg ttttgggaat catcgaacgc atatggatat accaacttgg aaaacctttt      1140
     gaggttgcaa aagagtttaa taggagtggc tagagaagat gttaagggtc tattaattaa      1200
     tccggctaat gttgtataca ttatggaaag acttcagttt acttatggaa ggccagaaat      1260
     gttaataaat agtcaaatga acatggttaa ccaaatagcc ccggttacag aaaataattt      1320
     agaaaagttg gtcgtattcg cttctaaggt agacaacttg gttatatttt tgaaatcagc      1380
     aaatgcaact cagcatttac agaatccttc tctgatagag agcttagtag gtaagatgcc      1440
     actcagtaag cgagttcaat ggattgaata ttcatcgcca attcagccat atcctaattt      1500
     agaccacttc agcaattggc tgagcactat ggcaagaagc attgcaaggg caaccattgc      1560
     agccccagtt aatattaaac agacgaagaa tgacaaaggc ttacagaaat ctattttaca      1620
     ttcttcgaat aatgcaccta aagggaacaa gaaggaatgt tatcaatgtc agggcgaaca      1680
     ttatatgtat aactgtgata aatatttaaa ggctgatata gccgaaaaat ggaaaattat      1740
     aaaaactctt cgcctctgtt ttggttgtct tcgacgcgga cacactctgc aagcttgtaa      1800
     gtacaaacga gagtgtaaga aaaatggatg caagaaaagc caccatactt ctttacattc      1860
     agacgattct caaaaggaag ataacattga accaaaagaa gctacgatta acacgatcaa      1920
     gccagcttct cgacaattat tgtttaaggt attggcagtt gagattatgg ggccaaacaa      1980
     taagatcata cagacttacg cgttcttaga cgaaggttcg tctgcttcat taataaacga      2040
     gaaattagca gaacgtctgg gtgtacttga accaaagaga aaattgactt tgaactggat      2100
     agaaaaccat gctaaagaat ttttgtccat ggaatgcaat cttcgcataa gatcacctgg      2160
     agctgataag aaatggctgc gtatctatgg aaacacagtt cccactttgg atctaccttt      2220
     gcaatcggta gatgtcgaga agctcacgaa aaagtatgct ctgctaagaa atctctcaat      2280
     aaacggatat acagatgcag atcctttgat tttagttgga attaataact gtcacttaat      2340
     agcaaacatt aaaagtgtat acttagatac aaatctagtt gcagctaaaa caccgttagg      2400
     ctggcttatt tatggttcca ccgatgaccc agacaaagga tcatcgcgat tatctgttgt      2460
     cctacacgcc cgttccaaag aagacaaccc tgaacaggaa atgcatgaca tgatatcaga      2520
     ttacttcact acagaaaatt ttggtgtaaa gattccaatt aagcctttag aatctgcaag      2580
     tatatctaga gccagggata tattaaagaa cacatctaaa agactagatg gatgctatga      2640
     aactggtctt ctttggaaag aagatgtgat taaattcccg gacagctaca aaatggcttt      2700
     tcagaggcta cagggcgtag aaaacaaaat gcacggactc gggaaaatgg aggaatatga      2760
     taaagccatt atggatttca tacataaagg atacgcggta aaaatgtctg atcgtgaagc      2820
     cgctcttgtt ggaccacgaa catggtactt acctcacttc ggtgtcgtaa acataaacaa      2880
     gcccaaaaag atgagattag tatttgacgc ggcagctacg atcaacggta tttctctaaa      2940
     taccatgctt ttaaagggac ctgatgaaaa cccaccattg acgacgattc tttttaaatt      3000
     caggcaaggc caagtcgcag tatgtgctga catcaaggaa atgttcttgc aagtgcaagt      3060
     tcgtagagaa gatcaagatt cgttgaggtt tctttggaga catggtaatc gaaatgctca      3120
     ggtcgacaca tacaagatga ctgtccttat atttggagca gcatgctcgc cctgttgtgc      3180
     tcaatacata aagaacatta acgcacaaaa tgccgaaagt tacagggaag aggtaatcga      3240
     tgccattcaa acaaagcatt atgtggacga cttcgtagcc agtttcaaat ctgaagaaga      3300
     agcatttcag atcagtcagg aagttaaacg ggtccataat ttgggaaagt ttgagctcag      3360
     aggctttgtt tccaattcca aacgtataca acaatcgctt aatgtctcaa ggaacactga      3420
     tttggtggaa ccaacggttc gaattaacag cgaatcaacg gataagattt taggaatgtg      3480
     ttgggatagt cagtctgata agtttgtatt cgatctcaag cttaaccgtg tcgacaagga      3540
     aatcktgtgt ggaatgaagt gccctactaa acgccaactg ctaagtctag ttatgtccgt      3600
     ttatgatccc tttggaatgt tagcagacct aatgatacac ggcaaaatct tgatccaaga      3660
     tgtttggaga tctgggatac actggaatga catgttaccg gaaaatctat ttggcaaatt      3720
     taagctttgg gtacttcagt tagagcaagc aaaacaattt caactaaata gatgctatct      3780
     gccagaattt ttgtcagtca aagataatat cgaattgcac attttcgtgg atgcgagcga      3840
     acaggccttt gcagctgtag catattggcg cgtatcttgt ggtgaaggtg ttaaactagc      3900
     ctttattgcc ggaaagacca ggtgcgctcc gttaaaattg ttatctattc ccagacttga      3960
     gctgcaagca gcggtgttag gtacgcgtct aatgaaaact attttagaaa gtcatgatgt      4020
     taacgtaaaa aggacaacgc ttgtgtcaga ctctagaaca gtcatttctt ggattcgatc      4080
     agatcatcga cagtttaagc ctttcgttgc ccatcgggta agcgagattt tggaaacgac      4140
     atcagaaagt gactggcgct gggttccaac gcatttaaac acagcagaca aggcaacaaa      4200
     gtccagcaaa tgtccaaaat acgttgttga tagcgaatgg ataggcggtc cagagttttt      4260
     gcttgctgaa gaagattctt ggccaataat agacttcact ttttcatcag atgacagcat      4320
     tgaaaggcgt aaaactacca tgaacgttca taccacacag tttttggata tcagccgatt      4380
     ctcaaactat cttcgattaa agcgcatgat gggatggtct ttgagattcg taaaaaattg      4440
     tcagaatcag actcaaggca aagaaaaagg agaattatct gcagatgagt tattacttgc      4500
     tgaagttaag ttgtgcaaag tagtgcaaaa tcaagtattc gcagaagagg ttgcagagtt      4560
     acaaagttca gattctgtgg ctaagggtag ttccatttac accctttccc caaggctgaa      4620
     tgcttatggc gttttagtag ttgcagggag attggactac gccgttaaca ttccagtaac      4680
     tcaacgacag ccaataatat tgccttctcg acatagcttc accgaactaa ttgtgaaatg      4740
     gtatcatgag acttatcatc atcaaaatga tgagaccatt gtaaacgaaa taagacgcaa      4800
     gttctggatc acaaacctac gaaaagcggt cgttcgagca aagtccaatt gtcaatattg      4860
     taagaatcgt aatgccaagc caatcactcc tttgatgggt caattgccca aagagagagt      4920
     gacaccgttt caacggccct tctcatttgt aggactagac tactttggcc cggttatggt      4980
     taccatcgga aggcggcaag aaaaaagatg ggttgcactc tttacgtgtc tgacaatcag      5040
     agccatgcat ttggaactgg ctgccgattt atcaacagac gcttgcattt tatgtatacg      5100
     gaatttcgtt aacagaagag gtgttcctat aagtatacga tcggacatgg gaactaattt      5160
     cgttggagca gataatgagc ttaaaaagat taaggacctt tttgactggg attacattaa      5220
     atcggaaatg tcaaataaag caatcgattg gcagttcaat tgcccttcaa atcccagttc      5280
     aggtggatgc tgggaacgct tggtaaggtc tactaaacga gttttaagcg taacgctcaa      5340
     ggagaaagcg cctcacgtcg aaaccctaag gagtttgctt attgaggctg aaaatataat      5400
     aaatagccgt cctttgactc atctacccat taacatagat gatccggagc ctttaacgcc      5460
     caatcatttt ttgctcggga caaccaattc aactcaaact ccaggagatg ttaacagctt      5520
     ctgtcatcgt aagcaatacc gaattgcgca acaattaaag gatcactttt ggagtcgatg      5580
     gattaaagaa tatctgccga ccttgactag acgaaccaaa tggcattcac gaaccaagcc      5640
     gatcgccgtt ggtgatatag taatcatttg cgaggataat cagcccaggg gatgttggaa      5700
     aaaaggaatt ataataagca cgattccggc taaggatggt tacattagat tggcagaagt      5760
     cgagacatct tctgggattc ttaagcgtcc agtatcaaag ctagcagtat tggatgtgct      5820
     aggtaaaacc ccatagtcgt tttacggtgg gtggga                                5856
//
ID   BEL-6_DEl-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-275
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 435-435 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 275 BP; 78 A; 52 C; 51 G; 93 T; 1 other;
     tgttgctggt tcgttagaat tcaaaattgt tgccatgcct catctccagc ttattagccc        60
     actatcgata tttcttaagc aatgaatcac gagatcgcgt cgcccatcac wagaaagcag       120
     tatatgtgag attggcggca cgacaacaca atttaataaa tttttttttg tattgcttat       180
     tgtccatcgc caaaataaaa ctttatctgg aaagcaaaga agttgtaatt ctatttagtg       240
     ttgttgttgt ctatttgcca catggtgtgg caaca                                  275
//
ID   BEL-6_DMel-I repbase;    DNA;    INV; 4945 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 24.06, Created)
DT   20-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, a partial
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4945
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus. A few copies.
XX
SQ   Sequence 4945 BP; 1323 A; 1232 C; 1023 G; 1338 T; 29 other;
     tttggtgacc caattcgtgt cgtttcggtt gtgcaaaaag aattgacttt gtgcagaaac        60
     acactcacac acatcaatgc tattgtgtgt gcagtttggt cgcaggtgca aatacagtgc       120
     atgtaaaact gttcacaatt gtgcgtgcat ttttaaatga ccgggttaaa attcagtgta       180
     attaaataaa ttaaaatgtc aaacaacgac acagtcagtt tgccaactga ggggattaca       240
     tttttaaaac gcaaggaaaa ctccatatat gtcgacgcta caaaaattgc tgcaggatta       300
     cccaccgaat cggtcacctg cctgaatgat gatggcctgc atttaaagct ggatttaata       360
     aaccagacag aggcctmgtt taacttggct cacgattccc tggaggaact ggatctcagt       420
     caaatgggaa gcgaattgcg tgaccagttc aaagacattg tctttgaaat gcggtatgtg       480
     ataaaaacgg aactcagtag acgcaaagtg cgagagattg cttgtcaact atgcgtcaag       540
     atccaggaac tgagtggtct tctgttctct atttcgacga ccgaatgtgc ctgacctgaa       600
     gctaccaacc tttagtggaa tttatacaga atacacagat tttatgtcga tgttttccac       660
     tgtcatcgat aaaaacccaa tactggctga catggagaag cttcaacacc tcaagtcttg       720
     cctaagagst cccgctttgg atgccgttgg tgctttagag gttactgatg caaattaccc       780
     ggctgcccta gagttgttga taagcgctac aacaataagc ggcttatttt cgagtctcac       840
     atttcggcga tcatgaacct accaaaggta gagggttcat cttcatgtaa agctgcgtga       900
     actgtccgac caaacgcttc acaactgggc acccctgtgg aaatatacga gtgtattctc       960
     atttattgtc ttctccaaaa agtcgaccgt gaaacccagc tattatggga ggmwgcgccc      1020
     ccactgaaag gcwtccaaaa tgtaatgaat ttgttawgtt cttggagaca aggtgcsaga      1080
     aggttggaag catcgaacgt gccaatgttg cacttggaat catgmcacag gttgtaaaac      1140
     caactctgga aatkcatttg tcgmcactac cccwcgctws ccgccgcaat gctgtagasc      1200
     acacagtttt cgattgccca caattcagaa aactgtckcc tcaagatckc ttacaggagg      1260
     maaaaakgtt ggctktatgc caaaactgcc ttaaaggtgg acatcacmtg cgacattgca      1320
     atgccgatcg ctgtcgtatt tgtgsaaska agcacaacaw attgctgcat tttggctcaa      1380
     ggccttcgcc atctcgctcc cagcctgctc aacctcagct agcttctgat kcccattcca      1440
     acgsaktgca agtagttgcg caggaatcat gccttggaca atcttcttcc atagtggcta      1500
     aaaatctcgg agcagaattt gtgttgttgg ccactgccgt gatcagtatt taaaataaat      1560
     caggatcttg ggttccttgt cgcgctttgc ttgactccgg ctcgcaacta cacataataa      1620
     cctctcgtct ggcacacact ttagaattgc ccaagtacat gtctgcagct acagtttctg      1680
     gaattggtaa agccagattt agagcagatg aatgtatggt aaatattaat ctaaaatctc      1740
     aaacttcaga gttcgcaagt gccaatatcg caactttggt agctcctact atcacggtca      1800
     accagcccaa cctaactgta aattctgaag actggaaaat accagctaat cttcgcttgg      1860
     ccgattccca attcttcagg ccccaaaaaa ttgacttgct gataggggct aggggctatt      1920
     ttctttgatc tgctgcgtgt aggccaaata aaattggccg atggacttcc cattctccaa      1980
     aaaactcgtt ttaaatgcat tctcactggt ggttcctcca aacttaacaa ggcttcatca      2040
     ttcatcattc atcaccgttc actcaaatgc gcctcaaatg cctgatgagg gcatccgtgt      2100
     ggagaaactg agagacagaa accattgctg aatccgtctc taagcgcata aaggaagagg      2160
     cctacttcaa gtctacattt tctaggcttt cgtctggaga atattcagtt cgacttcctt      2220
     taaaccgcag cccggcagtg ttgggagatt cctatcgaca ggcctatcgc cgttttttaa      2280
     atctggaaaa caaacttgaa cgccatcgcc agctcaaaga gaagtattca gcctttattc      2340
     acgagtactt atctttaaat catatgtcat ttgcggaatc actgtcttca ggaaagcagc      2400
     acaacaacta agctgcgtgt tgtctttgat ggctctgcca aaacttcttt tggatactct      2460
     ttaaacgaaa tattcatggc actttgttac agtttcgaac cgtccctgtt tttataactg      2520
     taccgatgtg cacgggtcaa ggaaccggac agctatttac aatgcatttt gtggcgtgac      2580
     acaccccagg aaaaaattca agtatttaag cttgataccg tcacctacgg aacaaagcca      2640
     gcttcatttc tatctgtcag agccatgcag cagctagcag aagacgaaaa aacgtcgaat      2700
     ccaattggcg ctaaaattct tctacgagac tgtcgatgtc gatgacctca tcacagaaaa      2760
     gaactcaacc gaagaagtct tggagatctg caattgctcg cttttacgac cctcttggtc      2820
     ttgtctgccc cgtcataacg aaggccaaaa tcctgctgcc gcaaatctgg agagaaaaac      2880
     ttgctacctt cggcgcttca ttctgcttgg ctaaacttgt ctgctgatat ctgtctcacc      2940
     cagaagttgc agtttcctcg tctcgcactg gtacccaata gcgtggtcga aatccatgga      3000
     ttcgtgatgc cagcattgac gcatatggag gatgcatcta catagtctcc atgttcaaag      3060
     tcaacgagtg ccccattgaa gaccctcacg gttcccaaat tggaattatg cgcggcagta      3120
     ttactggctc aactaatgcg ggaagtcctg cagcttggct tattttcatg ccctgtttat      3180
     tgctggtcag attctgcgtg gtgctgtcct ggattcgaga tgagtcttca cctttcaact      3240
     tttatttcta atcgcatctc tttagtccag gagctgtcaa atgccataga atggcattgt      3300
     gtcctacagc ctgcaatcca gcggacatac ttcagagggc acttctagtg agctgatcga      3360
     gcagtcttgg tccaggtcct gactatcttc aagaagacaa atcgcacggc cgaatcttgt      3420
     ctcgctccaa aggttctccc tgagctaaga aagaaggccc tcatcactct caagacccct      3480
     gccgacatcg acatcccaac cagttgtaaa tttgtcaact cctggcaaaa attgaagcat      3540
     gtttttggat acatcttcaa atttcgttat cgtatcaggc accccggcct gactgttaat      3600
     catcttaccg gaggcatgaa acttatcatt cgctccattc agatggcaca ccttaccgag      3660
     gactataatg ccctgctcaa cagtcgacaa gtaaaatcat cgagctcaat tgcatccctc      3720
     gcacccatca ttgacaactc tggactcatg agagttggtg gcagactgaa gcactcatcg      3780
     ttggactatg acgcacagca tccattaata ttgccacgtc agcacccagt cactcgtgcc      3840
     attatactcg actatcatcg tcgcaatctg cattctggac ctcgcgcact actcgcttcc      3900
     attcgactgc agttctggcc cattggcggt cgcaagacaa ctgcaagtgc agtcagcaaa      3960
     tgcatcatat gttttcgagc caagccaagc agatcttcct gaggaccgcg taacagcttc      4020
     acattccttc aaggtcactg gtctggactt ttgcggccca ttttattaca aaaatcctgt      4080
     tcggaataaa kcacccatca agtgctatat ctgcatcttt atctgctttt ctacaaaggc      4140
     tgttcacctt gagctggttc aggatctctc cacttctgca tttcttaatg cattgcgtcg      4200
     atttatactg actcgtggaa agcctgcacg catatggtcg gacaacgcca ccaattttgt      4260
     cggcgctcgg aatgagctgg aggatcttaa gcgtttgttc ctgaacacat cacatcaaac      4320
     tgcagtacat gaattctgct tgactgatag cattgaatgg cgattcatcc ctcccgatca      4380
     ccgcattttg ggcctctggg aggcggctgt caaaacagca aagcatcatt tttaccgagc      4440
     tgttggccct gccgttttgc ccgctgatga cctgcgcacg ctcatttscc acattgccat      4500
     taattttttc aagacttttt cctctttcca agcaccctga cgaccttgaa gtacacgcag      4560
     cgcacttcta ggcacggccc cccttgtttg ctgagcctga tctaacaaat taaatctcaa      4620
     ccgattggat cgctggcagc gaatcaccta ccacagaaaa tattctggag ccggtggaac      4680
     gtgaatatct aacgctcctt cagcaacgtt cccaatggcg agcacagaag acagacgtta      4740
     aatcgatgat gtcgttttag taaaagaaaa acctgcccaa atgccacgag ctcgagtaat      4800
     caatctgatc cctggacccg atatcgtcgc acgagctgct gttctcaaaa ctgctactgg      4860
     aatcttcaat agagccgtcg ccaaactttg cgttctaccc aaacaggatg atgttttcag      4920
     cccgtgtcct cgaacgaggg tagga                                            4945
//
ID   BEL-6_DMel-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 24.06, Created)
DT   20-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-425
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1056-1056 (2019).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~90% identical to the consensus.
XX
SQ   Sequence 425 BP; 117 A; 97 C; 66 G; 145 T; 0 other;
     tgtttggtta tgcatcccgc agccagtagc agctcatcat aaatttgagg tattttattt        60
     tatcactctt atacattgct ctgttcagca acatatttcg cattcccctt tgtgctatgt       120
     tcccctctct caatagagag cgagcacaac tgtttaaatc tttattttgt gaaacttgct       180
     catttgcctt ctgcatagca aagtcagtta caaattaagt gttgatcaca ccggtactgc       240
     tgtaatgcac tttacctctt tatcggttcg gtacgggcac tgccgccgtt ctttttatac       300
     aaacagcccc gtgtggcaaa atatattgaa ataaaactga aatattaatt gaaacattaa       360
     ttttaccgtg tttataaatt gccacaccac ttctccagtc aatgaaaaag ctcattgcct       420
     caaca                                                                   425
//
ID   BEL-6_DMoj-I repbase;    DNA;    INV; 5858 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DMoj_;
KW   BEL-6_DMoj-LTR; BEL-6_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5858
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1263-1263 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4892-5476] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           653..5857
FT                 /product="BEL-6_DMoj-I_1p"
FT                 /translation="MNNLESSADQVPASQVTYLKRKTKALFDRLERLYAES
FT                 DADKLSHMDSCDLRVLLDSITKLESNFDAVHTNLEESDFESISSDLPAKFE
FT                 SILLKFKALLQRELGSRPNQQFSSTLNTSFTNANPVLIMSNRSRLPQLELP
FT                 KFSGIYTEWENFFSMFKTIIDADSELSPIEKLQHLRSCLSGAALDTIGSLE
FT                 INRANYSVALDILQRRFDNKRFILQAHIRAIFGLEKADSSVGRLRQLADKV
FT                 TSHIRAMDSLASREEVADCIIVQTVLQKLDKCTQAKWEERSSANELPSWAK
FT                 LSTFLQERCRMLENVDQVLQDGQVGKSGKIVSTYLRKSFVASKAPSRCVFC
FT                 EDTSHMIFQCKRFEQLPPIARHKEAKRLALCLNCLRKGHQLKDCKSSTCRT
FT                 CQSKHHTLLHYNQSSVDTSNTVQQTNAIHSSAMVAMSPSLPQAHLSPHSSD
FT                 VVLLATAIILVKNRAGTFVPCRVLLDSGSQLHFVTTQFANQLQLRKRKSLS
FT                 AVSGIGDASFSTEGYSVDLVLKSRISDYSTTISAIIAKTITDNQPGISMST
FT                 NSWNIPSNIKLADPLFYKSQRIDLLIGAGLFFELLCIGQIMLAPGLPVLQK
FT                 TQLGWIISGGGQSAPKLSSFIVTQRASDDTNLSTRLDDLVRQFWEVEHVFE
FT                 PIAKVTTEELHCQQHFIATHRRLSSGEYLVCLPKKQGFESLGDSYVQAKRR
FT                 LLNLERKFARNYAMKEKYSAFMKEYIDLGHMSPVLSAEISKCKYFLPHHCV
FT                 YKEESSTTKLRVVFDGSAVTTSGLSLNDILMSGPTIQATLFHTLVRFRTFS
FT                 IALTGDISKMYRCVKVSEPDAMLQCILWRNSSDDDILVFKLNTVTYGTKPA
FT                 SFLAIRAMHQLAMDESSSYPLGAKTVLRDFYVDDLISGGNSVEEVRDIMEQ
FT                 TKNLLERGNFKLRKWCSNSINILRGVPEIEQESFLKLGDGTDVTKTLGLIW
FT                 EPRKDSFVFTFEPKISVGKHTKRSVLSTIARCYDPLGLIGPTLTRAKIILQ
FT                 RMWRDKLQWDESLPQSLETIWSEFCKDFHQVSNATFPRYVLELKARVELHA
FT                 FCDASLQAYGSCVYVRSSKNNAVKVHLLCSKARVAPLKTLTVPKLELCAAF
FT                 LLANLISEIEKLNLFKCEMHCWSDSAVVLSWLKEEPSKFNVFVANKVCAIQ
FT                 QLTIGMEWHYVPTEMNPADMLSKGAAPLELLHSKLWMHGPSFLQEEKCYWP
FT                 RHCLPEACLPEMRQRVLLSAEHVDISLSFKYINSFGIMKRIFGYVHKFIRK
FT                 IKSPELSSDDLRQGSFLLCRLAQRAQLQPEYSALQNGRNIHSSSAILSLFP
FT                 FMDDFGLLRVGGRLGHSTLGFDARHPIILPKNHPLTFAIISHFHQMHHHAG
FT                 PQALLAAIRLQFWPIGGMKTVARELRKCIICCRSRPRLVEHIMADLPKERA
FT                 QCSPAFTITGVDYCGPFYYKPDGRNRASVKCYVCVFVCFTTKAVWLELAKD
FT                 LSTAAFLGALKRFVSTRGIPTCIWSDNATNFVGARNELADLRRLFLSQEHR
FT                 TEVHNYCINNSFDWKFIPPRSPHFGGLWEAAVKTAKRHLYRSMGSALLGFD
FT                 ELRTLVCQIQAIINSRPLVPISENPDDLGVLTPGHFLIGRPLIDFPEPDLS
FT                 RINCNRLDRWQRMTYIQQLFWKRWSEEYLTILQQRVKWRTPRPSIKVNDVV
FT                 CVKDENLPPLKWPLARVVEIIAGADGAVRVAVLRTPTGTTRRAVNKLCVLP
FT                 VDDPVKSHGLLTVGR"
XX
SQ   Sequence 5858 BP; 1593 A; 1298 C; 1280 G; 1687 T; 0 other;
     ttttggtgac cccgacgtga tttctaatac actctgtggt gctcgcttag cgcgttaaac        60
     gttattacac catcttggcg tcgctcatca gtgaaattta caaaacattt gtgcaagata       120
     gtgcattcaa attatcaatt tcattgtgac acaaccttgt aaaacattta acatttcgtt       180
     cgaactgctt atatgtatgt gtacgcaatt gtcttgagtt tcttgcatcc tcttttaatt       240
     gccgtttcgt tcgtcgcggt tggcgctttc tcagctgcat ctgcatagaa agcgcgcaaa       300
     cctaaaaagc tgtgtcaatc gtagaagaca cacacacaca cacacataca taaatcaaag       360
     ctcagataat ctgcatgcag tggctttgca ttctgattat ctttatcatt ttttctttcg       420
     tccgtggatc atcgcgttta gcgcctttta tgtagcgtcc gcacagctat tccgaaaata       480
     gttgtctcga tcacacacgt acatacatac gtatatacgt acagtgggct tgcatataaa       540
     atgtgcagat aaattatatg tgcataagtg gaactattag cttgtacatt aactttgcaa       600
     ttgcaagtgt tctttcaaaa gtgaacataa aacaaataaa tttgtggcta aaatgaataa       660
     tttagaatcg agtgctgatc aagttcctgc atctcaggtc acttatctaa agcgtaaaac       720
     gaaagcgctg ttcgatagac tcgaaagact atatgccgaa tcggacgcgg acaaattaag       780
     ccatatggat tcgtgtgatt tacgtgtact tttggactca atcaccaaat tagagtcaaa       840
     tttcgatgcg gttcacacga acttagaaga atcagatttt gagtccatat ccagtgattt       900
     acctgcgaaa tttgaatcaa ttctactgaa gtttaaggcc ctgcttcaac gtgaactggg       960
     aagtcggcca aatcaacagt tttcttcgac acttaataca agctttacaa atgctaatcc      1020
     agtgctcatt atgtcaaatc ggtcgcgttt gccgcagttg gaattgccaa aatttagtgg      1080
     aatctatact gagtgggaaa actttttctc tatgttcaaa acgatcatag atgctgactc      1140
     tgagctcagc cctattgaga agctccaaca tcttcggtcc tgcttaagtg gtgctgcgct      1200
     ggataccatc ggctcattgg aaataaatag ggctaactat agcgtcgctc tggatattct      1260
     tcaacgtcga tttgataata aacgttttat tttacaggca cacatcagag cgatatttgg      1320
     gcttgagaag gcagattcat ctgtgggtag actgaggcag ttggcggata aggttacatc      1380
     tcacattcgt gctatggatt ctcttgcatc gagggaagaa gtcgctgatt gtatcatcgt      1440
     gcaaacagtg ttgcagaaat tggacaaatg cactcaggcc aaatgggagg aacgatcatc      1500
     agcaaatgag ttaccgtcgt gggccaagtt gtcaacgttc ttgcaagagc ggtgtcgaat      1560
     gcttgaaaat gtggatcaag ttttgcagga tggtcaggtt ggcaagtcag ggaagatcgt      1620
     gagtacatat ttaagaaaat catttgttgc ttccaaagct cccagtcgtt gtgtcttttg      1680
     cgaagacacg agccacatga tatttcaatg taagcgtttt gagcaattgc cacccattgc      1740
     acgacataag gaggccaaga gactcgctct gtgcctaaat tgcctaagaa aggggcatca      1800
     gctgaaagat tgcaaatcta gtacctgccg cacttgtcaa tcgaagcacc ataccttatt      1860
     gcattacaat caatcttcag tagatacatc caacactgtc caacaaacaa atgcaataca      1920
     ttcctctgct atggttgcaa tgtcaccttc tttgcctcaa gcccatctgt cgcctcattc      1980
     gtctgatgtt gtgcttctag ccactgctat aatccttgtt aagaatcgag ctggaacatt      2040
     cgttccgtgt cgtgtactct tagattcagg atctcaactt cactttgtta ccacgcaatt      2100
     cgctaatcag cttcagctcc gaaaaagaaa gtcgcttagt gcagtttctg gcattggaga      2160
     tgctagcttc tcaactgaag gatattcagt cgatctcgtt ctgaaatcgc ggatttcaga      2220
     ttactcaact accatcagcg caatcatcgc caagacgatt actgataatc agcctggaat      2280
     ttcaatgtct actaatagtt ggaacatacc ctcaaacata aagttagctg atcccttatt      2340
     ttataagtca cagcgaattg atcttctcat cggagctggt cttttctttg agctgttgtg      2400
     tattgggcaa attatgttgg cacctgggtt gccagttttg cagaaaactc aactcggctg      2460
     gatcatatca ggtggcgggc aatcggcccc caaactctca tcgttcatcg taactcaaag      2520
     agcttccgat gataccaatc tcagcactcg gcttgatgat ttggttcgtc aattttggga      2580
     agtggagcac gttttcgagc ctatcgccaa ggtaacaaca gaggagctcc actgtcagca      2640
     gcatttcatc gcaactcatc gtcgattgtc ttcaggggaa tacttagtct gcttgccaaa      2700
     aaagcaaggc ttcgaatctt tgggcgactc ttatgtgcag gccaagcgtc ggctcttaaa      2760
     tttggagcgt aagtttgctc gaaattatgc tatgaaggaa aaatactctg catttatgaa      2820
     agaatatatt gatctcggcc atatgtcacc ggtgctcagc gcagagattt ctaaatgcaa      2880
     atacttcttg cctcatcatt gtgtatacaa ggaagaaagt tcgacaacaa agctgagagt      2940
     ggtattcgac ggttcggctg ttaccacatc tgggctttca ttaaatgata ttcttatgtc      3000
     aggaccgacc atacaagcca cattgtttca cacactcgtt cgtttccgca cattttccat      3060
     tgcacttaca ggtgatatta gtaaaatgta taggtgtgtg aaggtttcag agcctgatgc      3120
     aatgcttcaa tgtatcttat ggcgaaactc atcagacgac gacattctag tcttcaaatt      3180
     gaataccgtc acttatggga ccaagcccgc ttcttttttg gctattcgtg caatgcacca      3240
     attagcaatg gatgagtcgt catcataccc cctaggagct aaaactgttt tgcgagattt      3300
     ctatgttgac gatctgatct caggaggcaa ttcagttgaa gaagttcgcg acataatgga      3360
     acaaactaaa aatcttcttg agcgaggcaa cttcaaattg agaaaatggt gctcaaactc      3420
     aatcaacatt cttcgcggag ttccagaaat cgagcaggag agttttctca aactcggcga      3480
     tgggaccgat gtgacaaaaa ctcttggact catctgggag cctcgaaagg atagcttcgt      3540
     attcactttc gagcccaaaa ttagtgttgg aaaacacaca aaacgttcag ttctgtcaac      3600
     cattgcgcga tgctacgatc cgttaggttt gatcggacca acattaacta gggcaaaaat      3660
     catcttgcaa cgcatgtgga gagacaagct acaatgggat gagagtctac cacaatcatt      3720
     ggaaacgatt tggagcgaat tttgtaagga ctttcatcaa gtgagcaatg caacctttcc      3780
     tcgttatgta ctcgaactta aagcaagagt tgaattacat gccttctgcg atgctagcct      3840
     tcaggcctat ggctcttgtg tttatgttcg gtcatcgaag aataatgctg ttaaagtgca      3900
     tctactctgt tccaaggcta gagtcgcccc actaaagacc ctcactgtgc ctaagcttga      3960
     gttatgcgct gcatttctgc ttgcgaactt gataagcgag atagagaaac tgaacttgtt      4020
     caaatgtgag atgcattgct ggtcagattc agcggtggtc ttgtcttggc taaaggaaga      4080
     gccatccaaa ttcaatgttt ttgttgctaa caaggtttgt gccatacagc agctcacaat      4140
     cggcatggag tggcattacg tgcccactga gatgaatcct gcagatatgt tatctaaagg      4200
     agcagcaccg ttagagctct tgcactcgaa attatggatg catggacctt cttttttgca      4260
     agaggaaaaa tgttattggc ctaggcactg cttgcctgaa gcatgcttgc ctgaaatgcg      4320
     tcaaagagtc ttgctgtcgg cagagcatgt ggacatctct ttgtcattca agtacataaa      4380
     ttcattcgga ataatgaagc gaatctttgg ttatgttcat aaattcatcc ggaaaataaa      4440
     atcacctgag ttatcatcgg atgatctgcg tcaaggatcg ttcctattat gtcgtcttgc      4500
     tcaaagagct cagttgcaac cggaatactc tgccctacag aatggaagga atatacactc      4560
     gtcaagcgcc attctttcgc tatttccgtt tatggatgat tttggtctac taagagttgg      4620
     tggtcgtttg gggcattcta ctctcggctt cgatgcgcgt cacccaatta ttttacccaa      4680
     aaaccatccc ttaaccttcg ctataatatc ccattttcat caaatgcatc accacgccgg      4740
     accgcaggct ttgcttgcag ctattcgatt gcagttttgg cccataggcg gcatgaaaac      4800
     tgttgcccga gaattgcgaa aatgcataat ttgctgcaga tcccggcctc gcctagttga      4860
     gcatataatg gcagacttgc ctaaggagcg tgcacagtgc tcaccggcat tcacaatcac      4920
     tggagttgac tattgtggac ctttttatta caagcccgat ggacgaaata gagcatcagt      4980
     aaaatgctac gtctgcgtgt tcgtttgttt cacaaccaag gctgtatggc tggagcttgc      5040
     aaaggatctg tcaacagctg cctttttggg cgccctcaag cgtttcgtca gtacgcgcgg      5100
     cattccaaca tgcatctggt cagacaacgc aaccaacttt gtgggtgcac ggaacgagtt      5160
     ggcggatctg aggcgtttat ttttgagcca ggaacatcgt actgaagttc acaactactg      5220
     catcaacaac agcttcgatt ggaaattcat acctcctcgt tcgccacatt ttggcggtct      5280
     ttgggaggca gcagtgaaga cagctaaaag gcacctatat cggtctatgg gatcggcact      5340
     tcttggtttc gatgaactgc gcacattggt gtgccaaatt caggctataa tcaattctcg      5400
     tcctcttgtt ccaatttcag aaaaccctga tgatcttgga gttctcactc cagggcattt      5460
     cctgattggt cgaccactta tcgacttccc cgaaccagat ctatctcgga ttaactgcaa      5520
     tcgcctcgat cgctggcagc gtatgacata catacagcag ttgttttgga agcgatggag      5580
     tgaggaatac ctcacaattc tgcaacagcg agtaaaatgg cggaccccac ggccttctat      5640
     caaggtcaac gatgtcgtct gtgtaaaaga cgaaaacctg ccacctttga agtggccatt      5700
     agcccgggtc gttgaaatca tcgctggagc cgatggagcc gtgagagtcg ctgttctgcg      5760
     tacacccact ggaactacac gtcgagctgt caataagctg tgcgtccttc cggttgatga      5820
     tcctgttaaa agtcatggtc ttttaacggt ggggagga                              5858
//
ID   BEL-6_DMoj-LTR repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DMoj_;
KW   BEL-6_DMoj-I; BEL-6_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-390
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1264-1264 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 390 BP; 117 A; 86 C; 52 G; 135 T; 0 other;
     tgttcggcgc agcagctaat aattgctctt aatagttaaa taagcttctc ttaagttaat        60
     ctctttcctt tgtcattctc attcgctgtt agtgcactct tgcacataac aaagcataac       120
     acacatacat atgtaaatct catccgctct gttaattgca tactcctctt tatttatatt       180
     cttttaaact ctgtacgaaa atagtcttca ttcgcgcaac acctacaaac ttgtcaccct       240
     cgcatcgaaa taactttgcc taaacagtgt ccacagactc ggcattaaat taataaataa       300
     taagctaaat tatatcgttt tggttttatt tttttgcctt cgtaaatgat tggagccaga       360
     gttgtcgaaa aagctcgaca gcttcaaaca                                        390
//
ID   BEL-6_DPe-I repbase;    DNA;    INV; 5707 BP.
XX
AC   AAIZ01009146;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DPe_;
KW   BEL-6_DPe-LTR; BEL-6_DPe-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5707
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAIZ01009146; Positions   27194   32900.
XX
CC   Positions [4736-5014] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..3003
FT                 /product="BEL-6_DPe-I_1p"
FT                 /translation="MTTLEDLKRQRSNIKRDITRIKSVVDAKSKTPICNDD
FT                 LRYRLNILETYFKNVLNVQANIEDLSPNDEGRADLEDTYIAIKLAIKEKMG
FT                 RDLNASIVAPDYHPPPVKSSLPRLSLPTFDGTYANYKNFIHSFEQIVVRES
FT                 GLSNIEKFNYLLTCLTGLALDTIQAFQVTSENYPKALEKLKSRFDNPTLIF
FT                 LEGIEALFALQPVERSNSQQLHSLVDKASALLSSLESIGKPENIVHAMVIY
FT                 IIMEKCDQQTRNKWKESQDYKTLPTWLACTQLLERHCQFLHSSGNSAATSS
FT                 QRKAESNKSNRHSNHQINSSFVITNPSCTLCSSSGHKISNCAQFKAMNSNQ
FT                 RYDNAKRLGLCINCLGNGHRVAQCSSTHRCRSCNRNHHSSLHHSQPQQPPQ
FT                 SSAGQSSTTEPVLQPAQPSWQTAANQSHQAASHSHMEITADDQILLSTAMV
FT                 LVKDATGEYKLGRALLDSCSQVNFVTETFAQKLRLRRVKHHIGIRSIGDSL
FT                 TSLKARTTTSIKSRTSGYQLTLQFGITSHIAYQPDSEIDISNWNLPANTPL
FT                 ADESFYRTKRIDLLLGTEAFYGALAVGQIRIGPNLPTLQKTLFGWVVAGRY
FT                 QRQYNRQPPLCLATVEQSIDKNLQQLWKVDSFVDPSARILPNHRRCEDHFR
FT                 DTTHQDASGRIGVRLPFQEDLTCLGSSFDTARARFFAIERRLARLPEIRSQ
FT                 YISFMQEYASLGHMSLVLNPNLEEPHYYIPHHFVLKPSSTSTKLRVVFDAS
FT                 CRTTSQRSLNDLLLVGPTIQDELYLQLLRFRRHKNVQAGTCE"
FT   CDS           4112..5014
FT                 /product="BEL-6_DPe-I_2p"
FT                 /translation="MDVVNSENRKSLFAAVHETNNILNIIDNISSYTHSLR
FT                 LIAWMIRFIRRCRKQSTFTTTSPTPDELRFASHCLIWNIQQTHFVKDIRLL
FT                 QKKKPLKSSLKFLTPFLEVVNGFELIKVGGRLEYSDLQDGQKHPLLLPSQS
FT                 KFVWNYIRHLHLRNYHAGPKALVTLIRLEYWIVNARDLARRIIRSCVHCVR
FT                 YRPKLLQQLMGSLPPTRLAPARPFERCGVDFCGPINTYLRIRGKGPTKAYI
FT                 AVFVCLLTKAVHIEVVSDLSTKAFLNALKRMIGGRRKLPTDIFCDNATNFV
FT                 GAIESTAGT"
XX
SQ   Sequence 5707 BP; 1539 A; 1371 C; 1224 G; 1573 T; 0 other;
     ctaagatttg taataaatag ttattcccta atactcaact ggatcgatcg acttttctct        60
     ttcttgtata gactttgatt cgtttgcaga aaaaactaac acacccccat ccgtgaatta       120
     acaataatgc gaaaaacgct ccgtgtacaa acattttgga gcccaacgtg gggcatgtgt       180
     gttatgttaa ttcttctgtg aacaattaag ctaatcgcaa tctacaaagc caacaattac       240
     aacattcgct cgtctcgcag ctgcaatcga aaggccgaaa accgaatcag aattgttcgt       300
     ctagatcgcg ggatcgttgt cctcgccttg ctctcgccgt tctcgcttaa ttttatcatt       360
     cgcttgtcac ccacaacgca ttcaacggcg cttgcattct cgttcgcttt gcagctacct       420
     gctttggtcc atcgatcaac gcattctttc tattggaatt ccaccgcttc actttcgttt       480
     tgctttcgtt gccgctgctg gaacttttgc ttttgctttc accgttggat ttgtgctcta       540
     gctgctgctg cttgctgcgt tttttgttgt tgttattttt ggaagctcta gttctgtgtc       600
     agcgtaatta aactacacaa caaaatgacg acgctcgaag acttaaaacg ccaacggagc       660
     aatataaaac gagatataac tcggatcaaa tctgtggtag atgctaaatc gaaaaccccg       720
     atatgcaatg atgatcttcg ctatcggttg aacatcttag aaacgtattt caagaatgtt       780
     ttaaatgtcc aagctaatat tgaagacctt agtccgaatg atgaaggacg ggcagatttg       840
     gaggatacat acatagcaat caagctagcc ataaaggaaa aaatgggaag agatctgaac       900
     gccagcattg ttgcgccgga ctaccaccca ccgccagtga agtcatcgtt accaaggttg       960
     tcgctaccca ctttcgacgg aacatatgca aactataaga atttcattca ctcgttcgag      1020
     caaattgttg tgcgtgagtc tggattgtct aatatagaaa agtttaatta tttgctgacc      1080
     tgcctcacgg ggctggcatt agatacaatt caggcattcc aggttacaag cgaaaactat      1140
     ccgaaggccc tagaaaaact caaaagccgt tttgataatc ctactcttat atttttagaa      1200
     ggtattgagg cattgtttgc acttcaacct gtggaaaggt caaacagtca gcagcttcac      1260
     agcctagtgg ataaggcatc cgccttatta agctcgctgg agtccatcgg caaacctgag      1320
     aacattgttc acgctatggt tatatatatt ataatggaaa agtgtgatca gcaaactcgg      1380
     aacaagtgga aggaatcgca ggactacaaa actctgccaa cctggctagc atgcacacag      1440
     cttttggaac gccactgtca gtttctccat tcgtctggaa actcggctgc tacttcgtca      1500
     caacgaaagg ctgaatccaa taagtcaaat cgtcattcta atcaccaaat aaactcgtcg      1560
     tttgttatca ctaatccgtc ttgtacactt tgttctagtt ctggccataa gatctctaat      1620
     tgcgctcagt tcaaggctat gaacagcaac caacggtacg acaatgcaaa acgcctcggt      1680
     ctctgcatca attgtcttgg aaatggtcat agagtggcgc aatgttcatc gactcatcgt      1740
     tgccgatcct gtaatcggaa tcatcattca tctttgcatc actctcagcc gcaacagcca      1800
     ccccaatcat cagcaggaca atcttcaact actgaaccgg tactccaacc agcgcaaccc      1860
     tcctggcaaa cggctgctaa tcagtctcat caagctgctt cacactctca tatggagatc      1920
     acagcagatg atcaaatttt gttgtcaaca gctatggttt tggtaaagga tgccacaggt      1980
     gaatacaaac tcggtagagc gttgcttgat tcatgttctc aggttaattt tgtaaccgaa      2040
     acctttgcac aaaagcttcg ccttcgtcgt gtaaaacacc acattggaat tcgcagtata      2100
     ggagactccc ttactagttt gaaggctcgt acgactacct ctattaagtc acgtacttcc      2160
     ggctatcagc tcactctcca gtttggtatc acatcccata ttgcctacca gccagatagt      2220
     gagatcgaca tatcgaattg gaacctacca gctaacactc cattggctga cgaatcgttc      2280
     tataggacta aacgtattga tttgttactg gggaccgaag ccttctatgg agctctagct      2340
     gttggccaga ttcgcattgg tccaaatctt cccactttgc agaagactct ttttggttgg      2400
     gttgttgctg ggaggtacca gcggcaatat aacagacagc caccattgtg cttggcgact      2460
     gtagaacagt cgatcgacaa gaatttgcag caattatgga aagtggactc atttgtcgat      2520
     ccaagcgcta gaattctccc aaatcatcgt cgctgtgagg accatttcag ggacacaaca      2580
     catcaggatg ccagtgggcg gattggcgtt cgcttgccat tccaagaaga tctaacttgt      2640
     cttggaagtt ccttcgatac agctcgagct cgattttttg ccattgagag acgtctcgct      2700
     cgtctaccgg aaattcgctc gcagtatatc tcgttcatgc aggaatatgc aagtctcggc      2760
     catatgtccc ttgtactgaa tcctaacttg gaggaaccgc attattatat accccaccat      2820
     ttcgttctga aaccaagcag tacctcgacg aagctcagag ttgtctttga cgcctcttgc      2880
     cgtacaacat ctcaaaggtc acttaacgat ctacttttag tcggccctac cattcaggat      2940
     gagttgtact tgcaattgct gcggttccga cgtcacaaaa atgtacaggc aggtacttgt      3000
     gagtgagaag gatagaaaat tccagtacat tttgtggcga gcatctccaa atacggatct      3060
     tcaaacctac caactcaata cagtgactta tgggactgcg tctgccccat ttctcgcaac      3120
     tcgtagtttg cattacttgg ctgaggattg taaggatgca tggccattag ggaatgctgc      3180
     tgttaaaact gcattttatg ttgatgacct ttggttgggg cattcaaatc atccaggcgt      3240
     gatggaagac gaatctacca aggaattaaa catttcagaa aactcagtca gcagcacact      3300
     cggcgtaact tggcatcaac gaagtgatgc atttagtttc acatttaatc caaaggaagt      3360
     ctatcccact accacaaaac gaacaatttt gtctactgcg tcgtcgctat tcgatccaat      3420
     cggtctgcta tcaccgttag tcattgtctc taagatcatt cttcaggagt tgtggctttt      3480
     gaaactagac tgggacgagt ctgtccccca gaatttaagc cacgcatgga gcaagtgttt      3540
     ggaatcgctg aattaactgt cgtcactagc ggtaactcgt ttttgttcgc tgcctgatac      3600
     taggagcatt caaatacatg gattttgcga cgcatcgatt cgggcatacg gctgctgtgt      3660
     ttatgtgcgc acggagaatt cgcttggaca ggtcacagtg aaattgttca cttctaagtc      3720
     aagagtagca ccagtgaaga aacagtctct tccgaagctt gaactatgca gtgcacatct      3780
     actttctcag ttatataaca aggtcaaggc catattcagt aaacacacta tcacatctta      3840
     tttttgcagc gactcacagc tcgtattgca ttggctgcaa caacactcag tcaccttatc      3900
     gacctttgtt ggaaatcgag tgtccgacat tcaggattta acgtctgatg gaaaatggcg      3960
     ctatgtgcca acacatcaaa accctgctga tattctgtcg cgaggctgta acgtgagcga      4020
     gttgattaag tatccatggt tttcgggtcc tacgtttcta gtcgacgatt cgctaaactg      4080
     gcccgccact ggtggaaaac ttgatattga catggacgtg gttaactcgg agaatcggaa      4140
     aagtttgttt gctgccgtac acgagacaaa taatatcctc aacatcatcg ataatatcag      4200
     ctcgtacact cacagtctgc gtctcattgc ttggatgatt aggttcataa ggagatgtcg      4260
     gaagcaatcg acgtttacca caacctcacc gacgccagat gaacttcgtt ttgcttcaca      4320
     ttgccttatt tggaacattc aacaaactca ttttgtaaag gacatccgtt tacttcagaa      4380
     gaaaaaacca ttaaaaagca gcttaaagtt tcttactccc tttttagaag tcgtgaacgg      4440
     attcgaactt atcaaggttg gtggacgttt ggaatactca gacctacaag acggtcaaaa      4500
     acatccgttg ctgctgccta gtcagtccaa atttgtatgg aactatattc gccatttgca      4560
     tcttcggaac tatcacgctg gacctaaagc cctagtcact ctcattcgtt tggagtattg      4620
     gatcgttaac gccagagact tggcacgtag aattattcgc tcctgtgtac actgcgttcg      4680
     ctacagaccg aagctgctac aacaactcat gggctcatta ccgcctacgc gactcgctcc      4740
     ggctcgaccc tttgaacgct gtggagttga cttttgtgga cccatcaaca catatctacg      4800
     cattcgagga aagggaccta caaaagcata catagccgtg ttcgtttgcc ttctcaccaa      4860
     ggccgttcac atcgaagtag tctctgattt gtcaacaaag gcgttcttaa acgcattgaa      4920
     acggatgatc ggaggtcgtc gcaagctgcc gacagacata ttctgcgata atgccactaa      4980
     ctttgtaggg gccatcgaat caactgcagg aacttaaaaa aggtttatgt ttttaaagca      5040
     gaacccaaga tgaaatctat aaattttgcg catctgactt tattaatttc cattttgttc      5100
     cccccagggc cacctcattt cggaggcctt tgggaagcgg gcagtccaag agtgcaaggg      5160
     gggcggttaa aatcgtacgc tggccaacac aaaggttcca cctttgaaag agtagagcac      5220
     tgtcgtcgtc gagatagaat cggatcctca actcgcgccc cgctatcgcc gctttcgtca      5280
     gaccccaaat gactatagca ctctcacggc tggtcatctc ttggttggcg aatcattgcg      5340
     atcactacct gaaaggtccc tcgagaatat caagctgtca agtatggacc gctacgatgc      5400
     gattacggcc cgtcaagcaa cggttttggt ggcaatggtc tgctgactac gtcaacgaat      5460
     tgcgatcgcg cacgaagtgg acagcaccct caacgaacct caccgagggc acgttggtca      5520
     tcatccatga ggacaacctg ccaccgctac gctggaaact aggccgagtg cagtctactg      5580
     tgcttgggaa ggatggactt gtacgggtgg tgcacctccg cactgccaat ggaacatgtt      5640
     gcaggccaat acacaagttg gcaattcttc cggtggtttg aaaggggtcc tttcaacggg      5700
     gccggga                                                                5707
//
ID   BEL-6_DPe-LTR repbase;    DNA;    INV; 144 BP.
XX
AC   AAIZ01009146;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DPe_;
KW   BEL-6_DPe-I; BEL-6_DPe-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-144
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAIZ01009146; Positions   27050   27193.
XX
SQ   Sequence 144 BP; 41 A; 38 C; 18 G; 47 T; 0 other;
     tgttcggtca aactccttta aggaacaagt attcaaatga ccctcgtaaa atagagagcc        60
     tacgctcact ttttgtattt cctctcacca taattgtact aaattcacca ctgtattctc       120
     tctcttatgc ccagtactca agca                                              144
//
ID   BEL-6_DPer-I repbase;    DNA;    INV; 6160 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6160
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1477-1477 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           555..6032
FT                 /product="BEL-6_DPer-I_1p"
FT                 /note="DUF1759, DUF1756, reverse transcriptase,
FT                 peptidase A17 and integrase."
FT                 /translation="MSTAESHDLEADPQVEIDNLSVIQTNLIARVNQTVRN
FT                 FRKDGADRKTKAYFQTRLQTLQRFLGEFEQNHQRLLILRCPSTHSYVSSEV
FT                 AFRFDEDYTTAFSIISEAYENVCPRAPPVQQNPEPANPSVSSVQLPKLPVP
FT                 TFTGKFVDWPAFHDAFVQLIHNNQKLSDVQRFHFLKQALPSDRDEDIQQMA
FT                 LAGNNYATAWSLVLKRYDNKRLQFMYHMNGLYDLPQLTKEQSADIKHMLNV
FT                 ATVCLNAFKNLDVQHWMAHHLTSRLSSTTLQAWELHLGSSAELATFSQLQS
FT                 FLNDRLVSIDVFENRGHSTTRTPVPQPVNQRHPKKSVGNVTYKGNSFHAKT
FT                 AVAEHTRCPHCSDSHNLRHCPDLLSKDCFARKAIVDHAKACLNCLSRSHAL
FT                 SKCTSKRNCTQCGQRHHTLLHFPTPAQVATQPHAASHSARSGNSWQYTTSD
FT                 SSGRATPTQLYARTPLPTQSTAQPLPVVPNTSSGGHPQSAATDSSVRTHSA
FT                 QLVSATATHHGPSTVLLATALVTIHNPHTGQSAVVRALVDSGSEGTLITEH
FT                 TVQALNLKRHPISAEIAGVGTTSKNRCTYTTELSLSSCTSQFCTTIDTAFI
FT                 LKTLTSQLPSKSIKLQQCPHLNGIELADPRFYKSQRIDLLLGADVIPQILL
FT                 SDIRRGKENQPIAQHTQLGWIVFGRATSTRSHAVTIRCHHNRLENLVQKFF
FT                 EMEHLGSAKQLTPEERWCEEHFKRTHIRQRNGKYLVRLPLKRLFDPSQVLG
FT                 KSRQIAINRFQMLQRRFQRQPELQAKYSEVMNEYFQLGQVTKVTTKEQQHC
FT                 IISKENGIESTCCTLPHHAVFKEESVTTKVRVVYDASCKTSNGKSLNDVLC
FT                 TGPALQNDLAGVVLSWRFHRFVFAADIQKMYRCIDMNAEDSQYQRIFWHDE
FT                 HNQVAEYYLNTVTFGTASAPYTAIRVIHQLAQDERDRYPLAERVLRHEIYV
FT                 DDVQSGASTREGALEIQNQLIGALRSAGMELRKWSANDASLLQDIPPDHLS
FT                 HKTLLEFEYQDPVKTLGLYWHPHQDYFGFKINFEISHAHTKRSLLSTVARL
FT                 YDPLGFITPCVMTAKAILKDSWMARIKRNDGSLAQLDWDEPLPTELLDRWQ
FT                 GFIQNLPYVEQIQVPRWLRFNIHELASLQLHVFCDGSSLAYAACAYIRAEL
FT                 PNGMIQTHLLAARSRVTPTKPITIPRVELSGALLAVKLAKWIRDQLRTAGP
FT                 PMSTFYWSDATIVLFWINGDPHRWQTFVSNRVGQILEHSTSTQWRHVPTAV
FT                 NPADCATRGLTPQELAVHPLWWSGPSWLQQPESQWPASGVPSQDIDRTIIE
FT                 EKPSVLFQNAVQVSEAPEAFIQNSSSYDRLISVMAYVLRFIHNIQAKGDKL
FT                 SGPLSVQELDNALIHLVRSIQQEVYATEILRLKGNKALSGTHKLCQLSPFL
FT                 DDQQILRVRGRLRNAMHLPISQRQPMIIPNHHHFTDLVVRNAHRLALHGGT
FT                 ELTLATIRHKFWIVNGKQTVKRILRQCVRCFRHRPKPAAQLMADLPLHRVN
FT                 PPTRAFIATGVDYTGAFEIQASRFRGHTNYKAYIAVFICLATKAIHLEAVT
FT                 GLTTEHFLMALQRFIARRGYCQHMYSDCGTNFIGADRALQTWQIHLKRELP
FT                 TTVIPALAARNVQWHFNPPHSPNFGGLWEANVKSVKTHLYRAFSGYKMTYE
FT                 QLATVLTQIEACLNSRPLCPLSAEPEDLAVLTPAHFLIGDSLLAPPDVTTR
FT                 DVPLTVQFLEGQKMIRQFWKRWSSDWLSHLQARPKWRHETDNLQVSDLVIV
FT                 KDDRLPPNEWKLGRIIEVHPGADSLVRVATVKTASGVYKRSVSKLCRLPLP
FT                 QTSE"
XX
SQ   Sequence 6160 BP; 1756 A; 1642 C; 1324 G; 1437 T; 1 other;
     tttttggtgg cccatgaggg gaaccgcgtt taattcgtac tatccgcata tgattctacc        60
     tcgttccgcg ttcagttaaa tgtacaaata aaatcatatt ttaccggctg caactgtaaa       120
     cggcaaacac aacgcaaacc aacggtttat ccaacagccg ctatctctcg cacgaagcag       180
     ggacaaagaa gaccagacga tagctctgcg cctggacagt agcctcactg cagcacacaa       240
     aaggcaactc aagccgacgg ttagacagca gcctctctct cgtgcaaagc agaaaccaag       300
     agaccaacga gcgttctgtt gctgcacatc atctctagac acaaggcctc aactcaacgc       360
     tcacagtagc acagtttctg ctctccgctc ggacaacacc aacaacaacg actcgcaagt       420
     tctcttaagc tacgctttaa gcaaagagaa gcactcccga gtaccagagt aagtgtttcg       480
     ttgtgggtat tttgtacaag gtcaaagaga gtgcaactaa gggtgagaaa ggtacataca       540
     catataacag caacatgtca acagccgagt cccacgatct cgaagccgat cctcaggtgg       600
     agatcgacaa tctcagtgtt attcagacaa atctcattgc gagggttaat caaacggtgc       660
     gtaatttcag aaaggatggc gcagatcgga aaacaaaagc ttattttcaa acgcgcttac       720
     aaactttgca acggttctta ggtgaatttg agcaaaatca tcaacgttta ctaatacttc       780
     gwtgtccaag tacgcatagt tatgtgtcca gcgaagtggc ctttcgcttt gatgaagact       840
     atacaacggc attcagcatc atatcagagg cctacgaaaa tgtatgtcca agagcaccac       900
     cggtacagca gaatccagag ccagcaaatc catcggtatc atcagtgcaa ttgcccaagc       960
     tacctgtacc gacatttaca ggcaagtttg tggattggcc ggcatttcac gatgcatttg      1020
     ttcaactcat ccataacaac cagaaactgt ccgacgtcca aaggtttcat ttcctgaagc      1080
     aagctcttcc ctcggatcgc gacgaggata ttcagcagat ggcgcttgcg ggaaataact      1140
     atgcaacagc ttggagtctc gtcctcaagc gatacgacaa caaacggctg cagtttatgt      1200
     accatatgaa cggtttgtat gacttgccac agttgacaaa ggagcagtct gctgatataa      1260
     aacatatgct taatgttgcg acggtttgtc tcaatgcttt caagaatcta gatgttcagc      1320
     attggatggc tcatcatctc acttccagac tgtcaagcac gacactgcaa gcttgggagc      1380
     tccatctcgg tagctctgcc gaacttgcca cattttctca gctacaatca tttctcaacg      1440
     accgtctcgt cagcatcgat gtgttcgaaa atcgaggcca ctccacgacg cggacacctg      1500
     tgccgcagcc tgtcaatcaa aggcacccga agaagtcagt tggcaacgta acatacaagg      1560
     gcaacagttt ccacgccaag actgcggttg ccgaacacac tcgctgccct cactgtagcg      1620
     acagtcacaa tcttcggcat tgcccggacc ttttgtccaa ggactgcttt gcaaggaaag      1680
     ccatcgtcga tcatgcaaag gcatgcctca actgtctgag ccgttcccat gcactttcaa      1740
     aatgtaccag taaaaggaac tgcacgcagt gtggtcaaag acaccataca ctgctgcact      1800
     tcccaactcc tgctcaggtg gcaacacagc ctcacgcagc ctcccatagc gctcgttccg      1860
     gtaactcctg gcagtataca acgagcgact catctggcag ggctacacct acgcaactct      1920
     acgctaggac cccacttcct actcagagca ctgcacagcc tctcccagtt gttcccaaca      1980
     ctagttccgg tggtcatcca cagtctgcag cgaccgactc gtctgtgaga acacactctg      2040
     cgcaactagt ctccgctacg gcaacgcatc acggacccag cactgtcctt ctggccactg      2100
     ccctggtcac aatccacaac ccccacactg gccaatcagc tgtggtacgt gcgttagtgg      2160
     attcaggctc ggaaggaacc ctcattacag agcacacagt gcaggctctc aacctcaagc      2220
     ggcatccaat ttcggcagaa attgctggag ttgggaccac ctccaagaac aggtgtacct      2280
     acactacaga attgtcatta agttcttgta cttcgcagtt ttgtactacc attgatactg      2340
     cgtttatact taaaacgctt acatcgcaat taccttcaaa atccatcaaa ttgcagcaat      2400
     gtcctcattt gaacggaata gaactcgccg atcccaggtt ctacaaatca caacggattg      2460
     atcttctgct gggagcggac gtaatcccac agatcctgct ttcagatatc cgcagaggaa      2520
     aggagaacca accaattgca cagcacaccc agcttggctg gatagtcttt ggtcgagcca      2580
     cttccacacg ctcacacgct gtcaccatta gatgtcacca caacaggcta gagaatctcg      2640
     tccagaaatt cttcgaaatg gagcatctcg gttctgcaaa acagctcaca ccagaagagc      2700
     gatggtgcga ggagcatttt aaacgaactc acatccgtca acgaaacggc aagtatttgg      2760
     tacggttacc acttaagcgt ttgtttgacc cttcgcaggt gctaggcaaa tcacgtcaaa      2820
     tcgcgattaa tcgattccaa atgcttcaac gaagattcca aaggcagccg gagctgcaag      2880
     ccaaatattc ggaagtcatg aatgagtact ttcaactagg ccaggtgacc aaagtaacaa      2940
     ccaaggagca gcagcattgc atcattagca aggagaatgg aatcgagtcc acatgttgca      3000
     ccttgcctca tcacgcagta ttcaaagagg aaagtgtcac tactaaggtt agagtagtat      3060
     atgacgcctc ctgtaaaacg tcaaacggaa aatcgctcaa tgacgtccta tgcaccggac      3120
     cagcgctcca aaacgatcta gccggcgtgg tcctgagttg gcgtttccat cgttttgttt      3180
     ttgctgccga cattcagaag atgtatagat gcattgacat gaatgcagag gattcgcaat      3240
     atcaacgcat cttttggcat gacgaacaca accaagtagc tgagtattat ctcaacacag      3300
     ttacgtttgg aaccgcttca gctccttaca cagccattcg cgtcatacat caactggcgc      3360
     aggatgaacg cgaccgatac ccactcgcgg aaagggtcct tcgacacgaa atatacgttg      3420
     atgacgtaca aagcggagct tccactcgcg aaggagcatt agaaattcaa aatcaattga      3480
     tcggagcctt acgatcagca ggaatggaac ttcgaaagtg gtctgcgaat gacgcttctc      3540
     tgctacaaga catacctcca gaccatttat ctcataagac attattagag tttgagtacc      3600
     aagatcccgt taaaacctta ggcctctatt ggcatccaca tcaagactat tttgggttca      3660
     agataaattt tgaaatcagt cacgcacata ctaaacgttc tttactttcc acagtcgccc      3720
     gactgtacga cccattaggt ttcatcacgc cctgtgtcat gaccgcgaag gcgatactca      3780
     aggactcatg gatggcccgc atcaaacgca acgatggcag cctagcacaa ctggactggg      3840
     atgaaccgct gccaaccgaa ctgcttgata gatggcaggg attcatacag aacttgccat      3900
     atgtcgagca aattcaagta ccacgatggc tgcgcttcaa catccacgag cttgcgtcat      3960
     tacagctaca tgttttctgc gatggatcat cactggcgta tgcagcatgt gcatatattc      4020
     gtgcagagct accaaacgga atgattcaaa ctcatttgct agctgcacgc agtcgagtca      4080
     cacccacgaa accgatcaca attccacgag tcgaactttc gggtgcgctg ctggcagtta      4140
     aactggcaaa atggatccgg gaccaacttc gcactgcagg accacctatg tcaaccttct      4200
     attggtcaga tgctactatc gttttgtttt ggataaatgg agatccccac cgatggcaaa      4260
     cctttgtgtc aaatcgcgtt ggacagattt tggagcatag tacatcaact cagtggagac      4320
     atgtacctac tgcggtaaac ccagcggact gcgcaactcg tggcttaaca ccacaagagt      4380
     tagcagtaca tccattatgg tggtctggac catcatggct acagcagccg gaaagccaat      4440
     ggccggcaag cggagttccc agtcaggaca tcgacaggac tataatcgag gagaaaccat      4500
     cagttttgtt ccaaaatgct gtgcaagtct cggaggctcc agaagccttc atccaaaact      4560
     cgtcctcata cgacaggtta atatcagtca tggcatatgt tctacggttt atacataaca      4620
     ttcaagccaa aggggacaaa ctgtctggac cactgagtgt gcaggagctc gacaacgctt      4680
     taattcatct cgttcgcagc attcaacagg aggtctacgc gacagaaata ttgaggttga      4740
     agggaaacaa ggcactatcg ggcacacaca agctgtgtca attatcccca tttctagatg      4800
     accaacaaat tctacgagtc agaggtcgac tgcgaaatgc aatgcacctt ccaataagcc      4860
     agcgacaacc aatgatcatt cccaatcatc atcattttac cgatctcgtc gtgcgtaatg      4920
     cccaccgtct cgcactccac ggcggcaccg aattaacgct ggccactatt cgacacaaat      4980
     tctggatagt caacggaaaa caaactgtca aacgcattct tcgacaatgc gtccgatgtt      5040
     ttcgtcaccg accgaaacca gcagcacaat tgatggccga tcttccccta catagagtca      5100
     atccgccaac tcgtgcattc atcgccaccg gagtggacta tacaggcgcg ttcgaaattc      5160
     aagcatccag attccgtgga cacacaaact acaaggcgta tatcgcagtt ttcatctgtt      5220
     tggctacaaa ggcaattcat cttgaagcgg tcacgggctt aaccaccgaa cactttctca      5280
     tggccctaca acgtttcatc gcgcgtcggg gctactgtca acacatgtat agcgactgcg      5340
     gcacgaactt cattggtgcc gaccgggctc ttcaaacctg gcaaatacat ttgaaacgag      5400
     agctacccac aactgtaata cctgctttag cggcccgaaa cgtccaatgg cattttaatc      5460
     caccgcatag tcctaatttc ggaggccttt gggaggcaaa tgtaaagtct gtcaaaacac      5520
     atctctatcg agccttttca ggatataaaa tgacctacga acaacttgct accgtgctaa      5580
     cacaaattga agcctgttta aattccaggc cattatgtcc actaagcgcg gagccggagg      5640
     acctagctgt cctcaccccg gcacattttc ttattggaga ttcattatta gctccgccgg      5700
     atgtaacgac aagggatgtt ccactcacag tccaatttct ggaaggacag aaaatgatcc      5760
     ggcaattttg gaagcgttgg agttcggatt ggctatcaca tcttcaagcc cgtccaaagt      5820
     ggcgacatga aaccgacaat ctacaagtca gcgatctagt aattgtcaag gatgaccgac      5880
     tgccacccaa cgagtggaaa ctgggaagga taatagaagt tcaccctgga gctgacagtt      5940
     tagtcagagt cgcaactgtt aaaacagcat caggcgtata caaacgatcg gtctctaaac      6000
     tatgtcggct accgttgcca cagacctcag aataatccta ccaccgttgc tagctccatt      6060
     cgaccataca tgtaccataa cgaacacttt atttattcac agagcattca catgtgacat      6120
     cctttggttt ctaatactgg tcccagtatt gggggcggca                            6160
//
ID   BEL-6_DPer-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-364
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1478-1478 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 364 BP; 106 A; 83 C; 75 G; 99 T; 1 other;
     tggacggttt tctaagggtt aaactacaaa gagagtgaga gckctctaac tgcgattgcc        60
     cactcggaga acggcttcgt ttcatgctag ggcggcgtaa cctcgtctcc gatcaccaag       120
     aagagtcttc gtttgcgtgt cgacgaaatc acaacgacaa ttagcagttg cagccggccg       180
     cgcttaaacc cgtattaccc attacattgt actctatacg cgattacgat taaagtttaa       240
     gttgattgaa gtccaaatga ataaatctcg aattgtctat atcgtgtagt acattattaa       300
     acgcaaagat tccccagagc atttctgctc aacattgaaa tctcgtatcg aggatttcac       360
     aaca                                                                    364
//
ID   BEL-6_DRh-I repbase;    DNA;    INV; 4771 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DRh_;
KW   BEL-6_DRh-LTR; BEL-6_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4771
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1557-1557 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3784-4392] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           354..2888
FT                 /product="BEL-6_DRh-I_2p"
FT                 /translation="MSSDEGNTVADHNIMTAENKVRFLKCKAESVYNSLKR
FT                 LDISLAKDAICLFGSAELTVRLELLEHTQASFRLAHNALEELDYSEIGSEL
FT                 SDNFEMLMVSVKSRLRLQLDNCQLRMPTSSTMHLDPSLDQSTVMVDRGHRT
FT                 RLPEVKLPTFSSGYTEYSDFLSMFTSVIDKDPYLADIEKLQHLRSCLAGAA
FT                 LESVRSLEISGANYRAALEILNKRFNNKRLVFQAHINEILGLKRLESASAV
FT                 ALRDFSDKIIGHMRALQALGDLKQISGCMVVYMIVQKLDAATQANWEESLS
FT                 TDRIPSEEDLLSYLEGRCQKLESVQHALASNMAHDHSAPRPARRTLLGAQV
FT                 SQSSCAFCDTPGHGIYSCSSFAGLSPSLRQREIKRLSLCFNCLKKGHHTRT
FT                 CNSGHCRTCGGKHHTLLHLRPDDSPLQVPAHQINASCFPAPSQPSASLAAQ
FT                 GFHSDVVLLATAIVLVKNRAGSLVPCRVLLDSGSQLHLITSRFAQELQLRK
FT                 YRSAATVTGLGDTAVSSEGSTVSISLQSRSSEYSVALTALVVPTITDSQPS
FT                 YIIDIADWNMPSNIQLADPAFNCPQRVDLLLGAGLFYDLLCVGQIKLVHGL
FT                 PLLQKTRLGWIVTGGGDRLRGNTSLLASQGSENGATLHNVRLEDLVRRFWE
FT                 VENLDSGVIMASKEELECEDHFIKNFYRLPSGAYSVRLPLKHHAKALGDSY
FT                 TQAHRRFLNLERKLQRNPHLKRQYVAFIKEYLELNHMSRVSPEAVGLCKYF
FT                 LPHHCVLKEDSTTTKLRVVFDGSALASSGSSLNDVLMAGPVIQPRLFNILI
FT                 KFRTYQVALTGDICKMYRCVRVSEPDNYLQCILWRDEPAMAAI"
FT   CDS           3784..4770
FT                 /product="BEL-6_DRh-I_1p"
FT                 /translation="MANLPKERLECVRAFAVSGVDYCGPFFYKSEVRTRSP
FT                 IKCYVCVFICFTSKAVHLELVKDLTTASFLSALKRFISTRGKPSQIWSDNA
FT                 TNFVGAKNELADLKRLLLSDSHMQSVHQACLAEGIDWQFIPPRSPHFGGLW
FT                 EAAVKTAKHHFYRSVGRQTLSFDELRTLVCQIASIINSRPLLSISENPDDL
FT                 DVLTPAHLLFGGPSTTIIEPDLTKLNYNRLDGWQRVTYLQQLFWSRWQKEY
FT                 LTLLQQRTKWRSPERMLKVNDVVLIKDENLPPMRWPLARVSALIPGRDGVC
FT                 RVADLKTSTCDIRRAVNKLCLLPTNDEVERQASNGGS"
XX
SQ   Sequence 4771 BP; 1165 A; 1146 C; 1144 G; 1316 T; 0 other;
     acatttggag gccccggcga gatatttaaa ttcaagtttg tggaaattcg tttgtgcaaa        60
     agaaacatgc acaaagaaga caaaaaacaa ccgttacatt aggctggttc cgctttaagc       120
     tggtcctaat aaaatatcgt atgttatata attgcataaa tatcggcata ttttgcgagt       180
     gcttatatac atatagggcg gtggttattt cgttgatatc acagtgcctc gccaactggt       240
     gactgtactt tcttgccgtt acaacaaaaa caaagacttc tgacaattgt aactgtaaac       300
     tcccgagttg tgcagtgcgt ttcggtttgc tttatacaaa tacatacgcg cagatgagtt       360
     ccgacgaagg caacacagtg gcagaccata atattatgac ggctgaaaat aaagtgcggt       420
     ttttgaagtg caaagccgaa tcggtgtaca atagcttaaa gcgcctggat atttcgctag       480
     ctaaagacgc gatttgcctg tttgggtccg cggagttgac agttcggcta gaacttcttg       540
     agcatactca agcctccttc aggcttgccc acaatgcgct ggaggagcta gactattcgg       600
     aaatcggcag tgagcttagc gacaattttg aaatgctcat ggtatcggtc aagtcacggc       660
     taaggctgca acttgacaac tgtcagcttc gaatgccaac atcttccact atgcaccttg       720
     atcccagcct ggatcagtca actgtcatgg ttgatcgagg gcataggact cgcctgcccg       780
     aagtaaaact gcctacattc tccagtggat acaccgaata ctctgacttc ctctccatgt       840
     ttacctcggt gatagataag gacccctact tggctgacat agaaaagctt caacatttgc       900
     ggtcatgctt agctggagct gcgctggagt cggttcgatc attagaaata tctggtgcca       960
     attatcgtgc ggcactagaa atcctaaata agcgctttaa taataaacgt cttgttttcc      1020
     aggcacacat caatgaaatt cttgggctca agaggctcga gtctgcgtct gctgtggcat      1080
     tgcgggattt ttcggacaaa attattgggc atatgcgagc gcttcaggcc ttgggagatt      1140
     taaaacaaat ctcaggctgc atggttgtat acatgattgt gcaaaaattg gatgcagcaa      1200
     cccaagctaa ctgggaggaa agtttgtcaa cggataggat tccaagcgag gaggatttgc      1260
     tctcgtacct tgaagggcga tgccagaaac tggagagcgt tcagcatgcc ttggcttcca      1320
     acatggccca tgaccattca gctccaaggc ctgccagaag gacgttactt ggtgcccagg      1380
     tcagccagag tagctgcgct ttttgtgata ctcctggtca tggaatatac tcctgtagct      1440
     ccttcgccgg tctgtctcct agtctacggc aaagagaaat aaaaagactt tccttgtgct      1500
     tcaattgcct aaagaagggg caccacactc gaacgtgcaa ctccggccat tgccgcacat      1560
     gcggtggaaa acaccacacg ctgctccatc tacgccctga tgattcaccg ttgcaagttc      1620
     ctgctcatca aataaatgct tcatgtttcc ccgcaccctc gcagccatct gcctcgcttg      1680
     cggcccaagg atttcattct gatgttgtgc tcttggccac cgctatagtt cttgtaaaga      1740
     acagagccgg ttccctggta ccttgccgag tcctactgga ttctggatct caactacacc      1800
     taattacatc tcgcttcgcc caggagttgc agttaaggaa atatcggtca gcagcaacgg      1860
     taactggcct tggtgataca gctgtttctt cggaaggatc tacagtcagc atctccctcc      1920
     agtcgcgttc ttctgaatac tctgtggctc taacggcgct ggtcgtgcca acgattacgg      1980
     acagtcagcc tagttacatc attgatatcg ctgattggaa tatgccgtct aacatacagt      2040
     tggctgaccc tgcattcaac tgtccccagc gcgttgacct gctccttggt gccggcctat      2100
     tttatgacct gttatgcgtg ggccaaatta agctggttca tggattgcct ctactgcaga      2160
     agactcgcct tggctggatc gtgactggtg gtggagatag gcttcgcggc aatacatctc      2220
     ttttggcatc tcaaggctcg gaaaatggag ctacactaca taatgtccgc ttggaggatc      2280
     tggttaggcg attttgggaa gtcgaaaatt tggacagtgg agtcataatg gccagcaagg      2340
     aagagctgga gtgtgaggat cattttatca aaaacttcta tcgtcttccc tctggcgctt      2400
     actctgttcg cctgccgttg aagcaccatg ctaaagccct tggcgattcc tacacacagg      2460
     cacaccggag atttcttaat cttgaacgca aactgcaaag gaatccccat ttaaagcgtc      2520
     aatatgtggc ctttattaag gaatacttgg agttaaacca catgtccaga gtcagccccg      2580
     aggctgtggg cctttgcaag tatttcctgc cgcaccattg tgttctaaag gaggatagca      2640
     caacaaccaa gcttcgcgtt gttttcgatg gatcggcttt agcctcatcc gggtcgtctc      2700
     ttaatgatgt ccttatggct gggcccgtta tacagccaag gctgtttaac attttgataa      2760
     aatttcgtac ttatcaggtg gccctgactg gagacatttg caagatgtat cggtgcgtaa      2820
     gggtgagtga acccgataac tacttgcaat gcattttatg gcgagacgaa ccggcgatgg      2880
     cagcgatata accaaaactc ttggtcttgc atgggatccg gcaacagacg agctgctgtt      2940
     ctctttatcg tctctagatc ccggctccaa ggcctgccga cgatctgttc tggccaccgt      3000
     tgctcgtttc tatgacccgc taggccttct tggtccagta atcacaaagg ccaaggtgtt      3060
     tcttcaacaa ctctgcaagg ataaattgga ttgggatgaa agtttgccct tggcccgtaa      3120
     cacctgctgg attgaaatgt gcatcagttt tcagagcgtc caacgcatat cattcccaag      3180
     atttttgctt ctttcagaaa ctgatgttga aattcatggt ttctgcgatg ccagcgagga      3240
     agcttacgga gcttgcatat atgtgctgtc taggggcact tctccagcca gcagccatct      3300
     cttatgttcc aaatcccgag tagcgcctct caaaacgtta tctgtaccta agctggagtt      3360
     atgtggcgcc ctgctactag ccaagctgat gaatgaagtt atgaaaatgg gtatgttcaa      3420
     tggtcctttt cactgctggt gtgattcctc tgtggcgcta tcctggatcg gtaatgagcc      3480
     tttcaaattc aacgtcttcg tggcaaaccg agtggcttct atacaggaat tgactgctaa      3540
     tatggaatgg catcatattc cgactacact gaatcctgcc gacgttttgt ccagggggtc      3600
     tactccggat ttactggcgc tttctgagat ctggtttcat ggcccaccat tcttacttgg      3660
     tggtcgcaag gattggccta cgcgtctgca ttatggcgat ccgagcctcg agttacgtaa      3720
     acaaatgtag tgaaaggctg tgtggagtgc ttccgggcca ggcccaaatt tctggaacca      3780
     atcatggcta atcttccgaa ggaacgtttg gagtgcgtac gggcctttgc tgtttctggc      3840
     gtcgactatt gtggaccttt cttttacaaa tcagaagttc gcaccaggtc tcccatcaag      3900
     tgctacgtat gcgtgttcat ctgctttaca agcaaggctg tgcacttaga gcttgtcaag      3960
     gatctaacaa ctgcttcgtt tttaagtgct ttgaaaagat tcatttctac acgtggaaag      4020
     cctagtcaaa tttggtcgga caatgctacc aactttgtag gagcaaaaaa tgagttggcg      4080
     gatttgaagc ggctgctgct tagcgattct catatgcagt ctgttcatca agcttgcttg      4140
     gcggagggaa tcgactggca atttattccg cctcgctcac cacactttgg cggattgtgg      4200
     gaggcagcag tcaagacggc caaacaccat ttctaccgct ctgttggccg ccaaacgctt      4260
     agttttgatg agcttcgcac tttggtttgt cagattgcgt caatcattaa ttctcgcccc      4320
     ttgctatcca tttcagagaa tccagatgat cttgatgttt tgactcctgc ccacctactt      4380
     tttggtggcc cttctactac tatcattgag cccgatctaa ccaagctcaa ctataaccgc      4440
     ttggatggct ggcagcgtgt aacatacctg cagcaactat tctggtcccg atggcagaag      4500
     gagtacctta cccttctgca acaacgcacc aaatggcggt ctcctgaacg aatgctgaag      4560
     gtcaacgacg tagttctgat aaaggatgaa aatctacctc ccatgcggtg gcccttagct      4620
     agggtgagcg cacttattcc tggacgagat ggcgtttgcc gagttgctga tctgaaaacg      4680
     tccacgtgtg acatcaggag agctgtcaat aagttgtgcc tgctgcccac caatgatgaa      4740
     gttgaaagac aggcttccaa cggggggagt a                                     4771
//
ID   BEL-6_DRh-LTR repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.08, Created)
DT   15-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DRh_;
KW   BEL-6_DRh-I; BEL-6_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-287
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1558-1558 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 287 BP; 75 A; 70 C; 56 G; 86 T; 0 other;
     tgttgagcgc agcggcaaac cactccaact aaatagagag tcagaatcac tcatttctaa        60
     gcggctcctc ttatctctct attaattgga ctactcagtc tgagcccgcc tctcaacgcc       120
     tacggtccgt cgccagcgca tacattttgt tgttgttgat tgcaagctgc ggtgttcgca       180
     aagcccgtag cccttgcata catataaacg ttaataaact gaagtattga atttatctcg       240
     ccttgtgatt tgttttaaaa tagctgacaa aaaggcttgt tagctca                     287
//
ID   BEL-6_DSer-I repbase;    DNA;    INV; 4010 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-6_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4010
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2003-2003 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           743..3556
FT                 /product="BEL-6_DSer-I_1p"
FT                 /note="DUF1759 and retropepsin."
FT                 /translation="MLSEQILNLLKRQAELNKTCGDIVANCHEGRRISNND
FT                 VQLLNDLEREFLTNHNMLVRLGPIDHEYFTKKKYEKVIDLLKEVRAAYDQS
FT                 RSTTKEAQSIFEQKVNQLKSYLEETYLEIQNEKRETLRIRKNKIHFLWQNI
FT                 AELKTKIGSCSLEVELTLSELEFDIQNISSEVNEQMKEKVDVKLEGMSKIS
FT                 DLPILPKIEVPTFGGDSKEWDLFQELFVELIHSRESLSTSLKFNYLKSALK
FT                 DEARNVVAHLLMGSAENYDAAWDLLTKRYENNRKIFSEQFNRLMDLTILNI
FT                 DSVRQIRYFIDTINEAIHILKLKANLTDEVDVLFAHMVLRKFNTHTLQLYE
FT                 SHVKKTKDIQKLSDVMDFLEQRLSWTSSVQEEKPVNKNLSKNFNSPKNFNF
FT                 TNGNNVVNTSERCHICKVMGHLLNQCYKFRGMNPTERLEIVKKLQICTRCL
FT                 KHSDSERCTSEYLCPQCNRRHHSMLHINAQKREKVNTCVTSAQTLLATAKI
FT                 KVKSANGDFEILRALIDSGSQKTIISEEAAQNLKLPRIRSKTEISGISSTG
FT                 TSVSKYKMKLVINGFNSKKPLVTEAIILPKLMKTLPTNEINVDKSKWHNFA
FT                 LADPDFNKPGRVDVIIGADLYTHIVKRGLAKINGLLCQNTNFGWIISGCTK
FT                 SKGTRSIVATTIEVENKEKSDIETEICKNNFINGTNFVGAARKLDEQLAVA
FT                 IQEDSAVASQLGKEGIEWHSIPPAGPHFGGIWEAGVKSVKYHLKRVIGDGS
FT                 LTYEEMSTLLCQIEGVLNSRPLYLSDNDIEETEVLTPGHFLIGRPPLEVIE
FT                 PIEENEKIGNLDRWKLIQKIKRDFWVKWKEDYLHTLQQRYKWRKNMPNIEK
FT                 GQVVLIKDENCHPSRWPLGKVEEIHKGKDEKVRVVKVKMQDASISRPISKI
FT                 CPLIGIKAAEYNEEEPKPKRLTRGGSKMSKYGFN"
XX
SQ   Sequence 4010 BP; 1521 A; 663 C; 783 G; 1041 T; 2 other;
     ttttggtcct tcggccactc tgcaactttc cccctgtggt aagaggttca gagtttttta        60
     aaccagcacc ttcaaatacg aaggctgcaa aaataactat ctcttgtttc cccccacccg       120
     tggtaaggaa cagagaagaa taactataaa gcaaaaagat atacaagagt cttttatgtt       180
     ttttaataca caccatttag tcttaaaata tagctaaagg ttgctgtgct accattcgaa       240
     tatggtaagg cgtgctgagg ccatattaac atcagtagtg aatgtgctta aaaatacata       300
     aataaaagtg cataaaataa aaaaaattgt gaaaacaatt tccaatccaa gtggatatcg       360
     aaaagtgaaa aattgggccg caaaaagata ataacatcgg cagctaaaaa cataaaatct       420
     actgcaagct acagcagtaa cgaagcggca ccaaaaacac caacgaccca caacagcggc       480
     aaaaatacgg cggcagcagg gacagccgta gatacaaatc aacagcggcg acaaatcagc       540
     agcggcgact acgacatcgg cggcgactac agtaacagca gtgacagcac cggataagtc       600
     ccactttaaa atattcactt ctttaatatt taaattgtta cttacttagt atatataagc       660
     aatataagaa catattaaat ttaaacaaag ataaaagaaa aaatctcaat tttgtccgct       720
     aaaaataata ttaaaaagaa aaatgctgtc agaacaaatt ttaaaccttc taaaaaggca       780
     ggctgaatta aataagacat gtggggatat agtagccaat tgccatgaag gtaggagaat       840
     ttcaaacaat gatgtacagt tgttaaatga cttagagagg gagtttttaa cgaaccacaa       900
     tatgttggta aggctagggc ccatagacca tgaatatttc actaagaaaa aatatgaaaa       960
     ggtaatagat ttattaaagg aagttagagc cgcttatgac caaagtaggt caacaacaaa      1020
     agaggcgcaa tccatatttg aacaaaaggt taatcagcta aaatcatatt tagaagaaac      1080
     atatttagaa attcaaaatg aaaaacgaga gaccttgaga ataagaaaaa acaaaattca      1140
     tttcctctgg caaaatattg ccgaacttaa aacaaaaata ggatcttgta gccttgaggt      1200
     cgaattaacc cttagcgagt tagaatttga cattcaaaat atatcatctg aagttaacga      1260
     acagatgaag gaaaaagtag atgtaaaatt ggagggtatg agtaaaattt cagatttacc      1320
     tattctacca aaaatcgagg tacccacatt tggcggcgat tcaaaagaat gggacctttt      1380
     tcaagaatta ttcgttgaat taatacattc aagggagagt ctcagtacct ccttaaaatt      1440
     caattatttg aagtckgcct taaaagatga agcgcgaaac gtggtcgctc atcttttaat      1500
     gggctctgca gaaaattacg atgccgcttg ggaccttcta accaagcggt acgaaaataa      1560
     tcgtaagatt ttctcggagc agtttaatcg gttgatggat ttgacaattt taaatattga      1620
     ttccgtcaga cagatcmgat attttattga caccattaat gaggcaatac acatccttaa      1680
     actcaaggcc aatctaacgg atgaggtgga cgtgttattt gctcatatgg tgctcagaaa      1740
     atttaataca catactcttc aattatatga gagccatgta aaaaagacca aggacatcca      1800
     gaaattatcg gatgttatgg attttttgga gcagcgactg agttggacta gttctgtaca      1860
     ggaagaaaaa cctgtaaaca aaaatttatc aaaaaacttt aactctccca aaaattttaa      1920
     ttttacaaat ggaaataatg tggttaatac aagtgaaagg tgccacatct gcaaagtgat      1980
     gggacattta ttaaaccaat gttacaagtt tagagggatg aatcccacag agcgattaga      2040
     aatcgtaaag aaattacaaa tttgcacaag atgtcttaaa cattctgaca gtgaaagatg      2100
     taccagcgaa tatttatgtc cgcaatgtaa tagaagacat cattctatgc tgcatatcaa      2160
     tgctcaaaaa agagaaaaag tcaatacttg cgtgacttct gctcaaacgc tgcttgcgac      2220
     agcaaaaatt aaagttaaat cggctaatgg cgattttgaa attttaaggg cactaataga      2280
     tagtggctca caaaaaacca taatatcaga ggaggcagca cagaatttaa agctgccaag      2340
     aatcaggtca aaaactgaaa ttagtggaat ttcgtctaca ggaacaagtg tgtcaaaata      2400
     caaaatgaaa cttgtgataa acggcttcaa ctcaaagaag ccattggtga ctgaggcaat      2460
     aatattgcca aagttaatga aaaccctgcc tacaaatgag ataaatgtag acaaatccaa      2520
     atggcataac tttgcattag ctgacccaga ctttaataag ccaggtcgag ttgatgtgat      2580
     tattggagcg gatttgtata cacatatcgt aaagagaggt ttggcaaaaa ttaatgggtt      2640
     gttatgccaa aatacgaatt ttgggtggat tatctctggg tgcaccaaat ctaagggcac      2700
     ccgttcaata gttgcaacta ccattgaagt ggaaaacaaa gaaaaatctg atattgaaac      2760
     agaaatttgc aagaataatt ttattaatgg aacaaatttt gtaggcgccg ctagaaagtt      2820
     ggatgaacag ttggcagtgg ccattcaaga agattccgca gttgcatccc aactcgggaa      2880
     agaaggaatt gagtggcatt ctattccccc ggcaggacct cactttggag gtatctggga      2940
     ggctggtgta aaatcagtca aataccatct taaacgagtt attggggacg gaagtttgac      3000
     gtacgaagag atgtcaactt tgttatgcca gattgaagga gttttgaact cacgtcctct      3060
     atatttatca gacaacgata tagaagagac tgaagttctg acaccaggtc actttcttat      3120
     aggacgacca ccgttggaag taattgaacc tatagaggaa aatgaaaaaa taggaaattt      3180
     agacaggtgg aaattaattc aaaaaattaa aagagatttt tgggtaaaat ggaaagagga      3240
     ctatttgcat acccttcaac agagatataa atggagaaaa aatatgccca atatagaaaa      3300
     aggacaagta gttctgataa aggatgaaaa ttgtcatcca tcaagatggc cattagggaa      3360
     ggtcgaagaa atacacaagg gtaaagatga gaaggttcgt gtagtgaaag ttaagatgca      3420
     agatgcaagc atttctcggc caatcagtaa gatttgccct ctcatcggca taaaagctgc      3480
     cgaatataat gaagaagaac ccaaaccaaa aaggttaaca agaggtggat ctaagatgtc      3540
     caaatatgga tttaattaat ttgccagagg aaggaatttt aactctaagg tctgattgca      3600
     ggctcgtact ctatcatcag catacatata taggtgaaat tacagatacg ccgaaaattg      3660
     ttcggagccc attcgaggcc aagtatataa accatacagt agagattgaa agactcgcta      3720
     agaaaataaa acagttaaat gaaagtcaca tcgaattaaa agggttaaat gtgcaccaca      3780
     tatcgggcca tacctcatta attatatgta taattattgt actaattttg attatatact      3840
     cgttacgtaa gtgtaatata agcaggcaat tacaagccgt aacttttgaa gtccgcacac      3900
     caaatcttta aatgtaaaat tcattaaaac aaaattatat gtatttggat tctatttgtt      3960
     aaaaaaaaaa aaaaaactgt actcctaaac cttgctggcc ctcggcagaa                 4010
//
ID   BEL-6_DSer-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-349
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2012-2012 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 349 BP; 115 A; 68 C; 67 G; 98 T; 1 other;
     tgttcacaca tgaacacgta tatataagaa aattatgtaa aaggatcgag ccgcagcact        60
     gcactattta gcgtctgcat atatatatat acataaccgc ttatcggacc ataaaacata       120
     attatacctg cgatgcaatg ggacctcctg cgagtggtca ccacacgttt gtgtagataa       180
     ggatatcggg cagcggaaat ttcccgcttg tacctgagtg ggwttaccta aaaataagtc       240
     tatgcgatat tcatgttagc cacctaagct aggactttaa gaaaataaaa tcagtttgaa       300
     attataactc agcaaatgaa gacgtgtttt atttggcaca gctctttca                   349
//
ID   BEL-6_DTa-I repbase;    DNA;    INV; 5537 BP.
XX
AC   AFFI01007722;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DTa_;
KW   BEL-6_DTa-LTR; BEL-6_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5537
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007722; Positions   50011   55547.
XX
CC   Positions [4606-5160] - Integrase core
CC   'GCAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           232..5535
FT                 /product="BEL-6_DTa-I_1p"
FT                 /translation="MCKKPPGSTSLIHPNIEEKTIKWAWKMTPQSVEFATR
FT                 PSNGTQNWVQCDNCKEWYHFVCAGVNSTIAQEDWTCALCKVPETGAASTSG
FT                 LQHQMEKDNPFDIQINQANLDISKLQSSANQNLNATNTITPCPNNLMLAML
FT                 EETREAEKKYIEQKYILLSQTQGAHAMSLPSISIGPIASQLAARQVLSPDL
FT                 PTFNGNPEDWPIFISMYENSCAIAGFSNAENMLRLQKCLKGKAYELVRDKL
FT                 LLPALVPEVINTLKTFFGRPEHILDRLIDKIRKINVHKDRLESLIDFAMAV
FT                 RNACATMEACNLTSYLDNPMLLRELVDKLPTQQKLNWALHPRCDAIPVVKS
FT                 FSDWLYKLAEAASTVLTAPSSRSSTVNTHTQAHRGMDSDDDSQSDQESASS
FT                 LTCAMCKSTEHQAAQCQKFQMLTTEERQRVINETKACYRCLKFHRRKCFSR
FT                 RDCGVDNCQSKHHPLLHRDAPKAELVSAHHKDSDHEEQYFRIVPVTLYGNG
FT                 VTFNTFAFLDEGSSVTLIDESILRVLKVSSTLEPLCLQWTSETTRMEETST
FT                 KAHIQISEAGSQKKLWLNNVRSVKNLALPKQSVDVNKLCNQYSHLQGLPLQ
FT                 SYFNAQPMLLIGANNWTLAVPRKIREGRHNAPIASKCSLGWSIQGSSNSNR
FT                 HISLHHCDCNWAEIDRAVKESFNVDPIAPRELHSENDKKAIGILEDTCKKI
FT                 NGHYEVGLLWRDKEVTFPESYSTALKRLNCLRAKTNKDPHLFDQIQGQIDN
FT                 LIAKGYAVELQPEDVAAKKDRVWYLPIFIALNPNKPNKIRLVWDAASKSHG
FT                 KSLNDFMLNGPDYLHPLTDILMSFRVGRIAVCADIAEMFHQITIQESDRHV
FT                 QRFLWLTKNSQTPRIFVMRAMTFGICCAPCIAHHVRDKNVYEYKSSNPRAY
FT                 ESITQAHYVDDLIDSYKDDDDAIKVASEVKNIHSKGGFIIRNWISNSTAVL
FT                 QHFGERQIDSQNSKDLGGPEKVLGMYWDPTSDVFRYIFRFARLKRDVLNGD
FT                 TTPTKREALQVLMSVFDPLGLLSCYTIGLKMLLQKVWRTGITWDEELPNSL
FT                 LALWSQWKTVLLYAGELEFPRYYSKLLPNADRTDLHTFVDASEDAYAAVSY
FT                 LRIKQGDDIETVLVAAKCKVAPLKPLSIPRMELLAAVMGVGLAKRIMKTRG
FT                 LKIDSATYWSDSKTVLQWLTMDPRKFQSFVMHRVGEIVDSTNRNQWRWIPT
FT                 KENVADLATKFFKTPDAYRWINGSPFLGQPEAEWPCQGVEFNICTDQSELR
FT                 KHVFLVRELDQLNFAADYFSDWKRLYRAVATFMLYIQRLRAKCSGKELPKT
FT                 LNSEIIGAAKSWIFEQSQVKVYSNEIRALKSNSTIDKSSPLIVINVYLDGK
FT                 EIIRVQGRADHLNPQEDAIVLPRKCRIAFLVTKDYHEKSHHMLHETTINLI
FT                 RSQFYIARLRVLYKNVRRACQKCKNSNSSPQVPQMAPIPAARLACFERPFT
FT                 YTGVNYFGPILVNVGRHKEKRWGVLFTCLTLRAVHIEVAYKLDVSSCIMCL
FT                 KNFMALRGTPKEIFSDNGTNFKATEKVVQEELRKIDFNDITIQYEAIKWRF
FT                 NPPAAPHMGGAWERLVRSVKTVLKSICQSNNFNDETLRTALMEAETIINSR
FT                 PLTFVSLDSADDDALTPNYLLLGSSNGYKPIADHNTDLRLRWHQTQSFADK
FT                 FWKRWVKEYTPTLTRRSKWFTKRPPIAVGDVVVVIDDQLPRNLWPKGRISD
FT                 VITAKDGQARRATIWTPKGTMIRPVAKIAVLDVGFQESEHPKDLHGGG"
XX
SQ   Sequence 5537 BP; 1742 A; 1328 C; 1168 G; 1299 T; 0 other;
     gcaacacaaa gttttttaaa gctctctata ttatttttaa acttgattta aataaagacc        60
     gctacacaaa tttgtaaacc ttaaactgtt tcgcctctta ttaacatcgg tgcctcaaca       120
     tttctttaaa aaactttaac tacgcacttc atattcggaa ctaattgtga aatacacaaa       180
     ggcactcaca tacatattgc ctacatatcc acatgagtgt aaaagctatg tatgtgtaag       240
     aagccaccgg gtagtacatc actaatacat ccgaacattg aagaaaaaac cataaaatgg       300
     gcatggaaaa tgacaccaca gtctgtggaa tttgcaacaa gaccctctaa tggtacccaa       360
     aattgggtac agtgcgataa ttgcaaagag tggtaccact ttgtctgtgc tggagtgaac       420
     agtactattg cgcaggagga ttggacttgc gccttgtgca aagtcccgga aacaggagcg       480
     gcttcaacaa gcggactgca acatcaaatg gaaaaggaca atccatttga catacaaatt       540
     aaccaggcca atttggatat ctcgaaattg caatccagtg caaaccaaaa cttgaacgcc       600
     accaatacaa tcacaccatg tccaaataat ttgatgttgg caatgctgga ggaaacacgt       660
     gaagctgaaa agaagtacat cgagcaaaaa tacatattac tttcccaaac acaaggagca       720
     cacgctatgt cacttccatc aatatcaatt ggaccgattg catcccagct agccgcaaga       780
     caggtgctat ctccggatct gcctaccttc aatggcaacc cagaggactg gccaattttc       840
     atcagcatgt acgaaaatag ctgcgcaata gccggcttct cgaacgctga aaacatgctt       900
     cgactacaga agtgcctcaa aggtaaagcc tacgaattgg tgcgggataa actgctacta       960
     ccagcgctgg ttccagaagt tatcaacacc ctgaaaacct tttttgggcg cccagaacat      1020
     atccttgacc gtttgatcga caaaatcagg aagatcaacg tacacaagga cagattggaa      1080
     tctcttattg atttcgccat ggcagtacgc aatgcatgcg caactatgga ggcctgcaac      1140
     ctgacctctt atcttgacaa cccaatgctc ctgcgcgagc tcgttgataa gctgcccacg      1200
     caacagaaac tgaactgggc cttacacccc cgctgtgacg ccataccagt tgttaagtca      1260
     ttcagcgact ggttgtacaa attagcagag gcagcctcaa ccgttttaac cgcaccgagt      1320
     tcaaggtcca gcactgtgaa cactcacaca caggctcacc gaggaatgga cagcgatgac      1380
     gattctcaat cagatcaaga atcagcttca agcctcacat gtgcgatgtg taagtccact      1440
     gaacatcaag ctgcccagtg tcagaaattt cagatgctaa ctactgaaga acgccagcgc      1500
     gtaattaacg agaccaaagc gtgctacagg tgcctaaagt tccaccgtcg caaatgcttt      1560
     tcaagacgtg actgtggcgt cgacaattgt cagtctaagc accacccact tctgcacaga      1620
     gatgcaccga aggccgaact cgtcagtgcc caccataagg atagcgacca tgaagaacaa      1680
     tactttcgaa tcgtgccagt cactctatat ggaaacggag taactttcaa cacctttgcc      1740
     tttttggatg aaggctcgtc tgtcacgctt attgacgaaa gtattttgcg agtccttaaa      1800
     gtttcgtcaa cgctcgaacc actatgccta caatggacta gcgaaaccac tcgcatggag      1860
     gaaacatcta ccaaggctca cattcaaata tcagaagcgg gaagtcaaaa gaagctgtgg      1920
     ctaaacaacg tacgctcagt taaaaatctg gctttaccaa agcaaagcgt cgatgtcaac      1980
     aaactttgca accaatattc acacttgcaa ggactgccat tacagtcata cttcaacgca      2040
     caaccgatgc tgttaattgg cgccaacaac tggactttgg cagtacctcg gaagattcgt      2100
     gaaggaagac acaatgcccc tatcgcctca aagtgttcac tgggatggag cattcaagga      2160
     tcaagtaatt caaaccgtca catctccttg catcactgtg actgtaactg ggcggaaatc      2220
     gacagagctg ttaaggaaag cttcaacgta gaccctatcg caccacggga gctccactct      2280
     gaaaacgata aaaaggctat aggtattctg gaagatactt gtaaaaaaat caacggccat      2340
     tatgaagttg gcttgctttg gcgcgataag gaggtaactt ttccagaaag ctattctacg      2400
     gcattgaagc gcctcaattg cctacgagcc aaaaccaaca aggacccaca cctcttcgat      2460
     caaatacaag gacaaatcga caatctcata gcaaaaggct acgcagtcga gctccaaccc      2520
     gaagatgtag ctgccaagaa agatcgggtg tggtatctcc caattttcat tgcccttaat      2580
     cctaacaagc caaataaaat aagactagta tgggatgccg cttcaaaaag ccacggaaaa      2640
     tcgcttaatg attttatgct gaatggaccc gattatctgc acccattgac tgatattcta      2700
     atgtcattta gagtcggtcg tatcgccgta tgtgcagaca tcgccgaaat gtttcatcag      2760
     ataaccattc aagaaagcga cagacatgta caaagatttc tatggctcac taaaaattcg      2820
     cagacaccaa ggatttttgt catgcgcgcg atgactttcg gaatttgctg cgctccttgc      2880
     attgctcacc acgtacgaga caaaaatgta tatgaataca agagctcaaa tcctcgcgct      2940
     tatgaatcca taacacaggc tcactacgta gacgatctca ttgacagcta caaggacgat      3000
     gatgatgcca ttaaggttgc gtctgaagtc aaaaatattc actccaaagg cggattcatt      3060
     atcagaaatt ggatttccaa ctctaccgca gttcttcagc atttcggaga gcgtcaaatc      3120
     gacagccaaa attccaaaga cctgggtggt cctgaaaagg tgcttggtat gtattgggat      3180
     cctaccagtg acgtttttag gtacattttc agatttgcga gattgaaacg agacgtcttg      3240
     aatggtgata caacgcccac caaacgcgag gctcttcaag tactgatgtc cgtgttcgat      3300
     ccccttggcc ttttatcttg ctacaccatc ggtctgaaaa tgctactcca aaaggtgtgg      3360
     cgtactggaa taacttggga cgaagaactg ccgaattcac tactcgccct ttggagccaa      3420
     tggaagacag tactactgta cgcaggagaa ctggagtttc ctcgatacta ttctaaactg      3480
     ttgccgaatg cagatcggac tgacttgcat acattcgtag atgcaagtga agacgcctac      3540
     gcggcagttt cctacctccg tataaagcaa ggagacgaca tcgaaactgt attggtagcc      3600
     gccaaatgta aagttgcgcc tttaaaacca ctctccattc cacgcatgga actcttggca      3660
     gcagtaatgg gagtaggatt agcaaaaagg ataatgaaaa ctcgaggact aaagattgat      3720
     tcagcaacat actggtccga ttctaaaacc gttcttcaat ggctaactat ggacccccgg      3780
     aagtttcagt cattcgtcat gcatcgagtt ggcgagatcg tagacagcac caaccgcaac      3840
     cagtggcgct ggattccgac aaaggagaac gttgctgact tagctacgaa gttctttaag      3900
     actccagatg catatagatg gatcaatggc tcaccatttt tgggacagcc ggaagccgaa      3960
     tggccatgcc aaggagtcga attcaacatc tgtactgatc aatctgaact tcgtaaacat      4020
     gtcttccttg taagagaact tgatcagctc aattttgcag cggattattt ctcggattgg      4080
     aaacgtctgt acagagctgt agcgaccttt atgctttaca tccaaagact gcgcgcaaaa      4140
     tgcagcggaa aagagctacc aaaaacactc aactctgaaa tcataggcgc tgccaaatcg      4200
     tggatatttg aacagtctca ggtaaaagta tattcgaatg agatcagagc cctgaagtcc      4260
     aattcgacta tagacaaatc cagcccatta attgtaataa acgtctacct agacggaaaa      4320
     gagattatac gagtacaagg cagagcagat cacttgaatc cacaagaaga cgccatcgta      4380
     ttgccaagga agtgtaggat cgcctttttg gtcacgaagg attaccacga gaaatctcac      4440
     catatgctcc acgagacgac catcaactta attcgaagcc aattctacat agcacgtctg      4500
     cgagtcttgt acaaaaatgt tcgaagggca tgtcaaaaat gcaaaaactc caattcgtcg      4560
     ccacaagtgc cccaaatggc accgatacca gcagccagac tcgcatgctt tgaaagaccc      4620
     ttcacctata ctggggtgaa ctattttggc cccatattgg taaatgttgg tagacacaag      4680
     gaaaagcgct ggggagttct atttacttgc cttaccctta gagctgtaca catagaagta      4740
     gcatataagc tcgacgtaag ctcatgcata atgtgtctca aaaactttat ggcgctccgt      4800
     ggaaccccga aagaaatttt ctccgacaac ggaaccaact tcaaagccac agagaaggta      4860
     gtacaggaag agctcaggaa aatagacttt aatgatataa caatacagta tgaagctata      4920
     aagtggcgtt ttaacccacc agctgcaccc cacatgggag gagcgtggga gcgactagtc      4980
     cgatcagtaa agactgtact aaaatcaatc tgccagtcga ataatttcaa cgatgaaaca      5040
     cttcgcacag ctctcatgga agctgaaact attatcaatt ccagaccatt aacctttgtg      5100
     tccctagatt cagccgacga tgacgccctt accccgaatt acttgctatt aggctcatcg      5160
     aacggctaca aaccaatagc agatcacaac accgatctta ggctgcgatg gcatcaaacg      5220
     caatcatttg ctgacaagtt ttggaaacga tgggtaaagg aatatacacc aacactaact      5280
     aggcgcagca aatggttcac taaacgcccc ccaatcgccg ttggtgatgt agtcgtcgtc      5340
     attgatgatc aactaccgag gaacctgtgg ccaaaggggc gtataagtga cgtaataaca      5400
     gccaaggatg gtcaagcccg cagagctacc atttggacac caaaaggaac tatgatccgt      5460
     ccagtcgcca aaatagcagt cttggacgtc ggatttcagg aaagtgaaca tccgaaggac      5520
     cttcacgggg gggggaa                                                     5537
//
ID   BEL-6_DTa-LTR repbase;    DNA;    INV; 134 BP.
XX
AC   AFFI01007722;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DTa_;
KW   BEL-6_DTa-I; BEL-6_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-134
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01007722; Positions   49877   50010.
XX
SQ   Sequence 134 BP; 47 A; 31 C; 25 G; 31 T; 0 other;
     tgttaccgcc gtaatttaaa tttttatgcc tgccgccaaa tcgaattgcc acttatgcga        60
     aaatggcaac accaacatag tatagtatgg cagctctacg aaaatgaagc cacttgagaa       120
     aaaccagcga agca                                                         134
//
ID   BEL-6_DWil-I repbase;    DNA;    INV; 7836 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DWil_;
KW   BEL-6_DWil-LTR; BEL-6_DWil-I.
XX
NM   BEL-6_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-7836
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-7836
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           782..7834
FT                 /product="BEL-6_DWil-I_1p"
FT                 /translation="MFPTKTEKLLAKQHELHKRLKKLEELDASKFTSKIIN
FT                 EVNEIQKLWISYHSQMLESGVTQHYYFTDGKYEEGLDMAAKLLAKGESSRQ
FT                 STVVSETIEADATMSENVEGSNGESRGNATSSIENQEKFEEKVRHLQQYLE
FT                 MVSKDLRTIDNRTGEMYIKKIKFLFRKVQVCQAYTHELYRDNETFKEVIEE
FT                 LEFDLQNTLVALEEKIKDQKNLKVENVTVGGELPVLPKIQVPTFSGEPREW
FT                 DLFVELFAELIEKREDLSLTLKFNYLKSALKGEARSMVAHLLSGSADNYSA
FT                 AWELLTKRYENNRRVFSEQLSRIVDLPMINNESAKSVKGVIDIVNESIHLI
FT                 KIKANLSDEVDVVFAQLLLRKFDREALQLYESQVRKTREIQQLSDVMEYLE
FT                 QRYCSLSAMRKEEKKPLQKTWVAGSKDGCPICKGPWHSAFLCYKFKALTPK
FT                 ERVEIAKKLQLCTRCLKHSSNKRCTNEMVCSLCSKGHHTLLHFGEKQAKVN
FT                 TCVTAEQKLLATALIQVKKINGEYETLRALIDNGSQSTILSEEAAQMLKLP
FT                 KIKKQTEISGVSSTKPRTSKYRVNIEMKTRDSEIELIKVEAIVLPQLMKAL
FT                 PLKIANVDMSKWHTYVLADPTFNKPGRVDMIIGIDVYTHILKSGVAKISGL
FT                 LGQNTQFGWIVSGCTKSKGDESIVATTIDITDMERFWEMEADEKDDTEASE
FT                 CEENFNKTTMIDASGRYVVTIPFKQEKELGDSKAQATARFLNLEKKFQKNP
FT                 KLKEEYEKFINEYLELGHMVETKDEGAYYLPHQAVIKEASLTTKLRVVFDA
FT                 SAKTTNNRSLNDVMWIGPRLQKDIFDIIVKWRKWQYVVSADIEKMYRQINI
FT                 DLNDQKYLHILWRISPQKKLRIYKLTTVTYGTASAPYLATRVLAEIANRCQ
FT                 DKVISEIIRYEFYMDDLMTGGNTVQESKRKVQQVSRELEKAGMNLRKWISN
FT                 KSEIIEEVIDTGDNKVLKIDENEAIKTLGLQWEPIKDEFKFKVHCDESRKV
FT                 NKRGVLSTLAKIYDPLGWLAPVTVIGKLFMQKLWLAEQNWDQELSDNETTE
FT                 WKSFRDNLVYLEEVRLPRWIKTQPNMLLQIHGFADASEKAYAAVVYAKVGE
FT                 AVTLIASKNKVNPIKNRKTIPKLELCAAHLLSQLLQRVQQSIAAPSEIYAW
FT                 SDSTITLCWIKNGASKEKFVRRRIEDILKIREITWNHVKSEDNPADVASRG
FT                 ICPNKLKDCELWWNGPRWLGEAKDKWPKQKTDDDKIMVNSVLLNTESSIMQ
FT                 ELIEKYSCMNKLARITAYVLRFIGIKKRDKVYPSYLTVNELKNAKNFIIKQ
FT                 QQAYQFSREISCLTQNKQIDMKSKILSLNPFLDNDGILRVGGRLQNANICF
FT                 DTKHPVILDKSHLTMLLIKDAHKETLHGGINLMRSQIQRKFWIFGLRNALK
FT                 KYLRECVTCARYRQVTAEQIMGNLPKNRVTVSSPFHNTGIDFAGPYHIRCS
FT                 KNRGQKTFKGYIAVFVCLSTKAMHLEVVSDLTTDAFLAAFRRFVARRGKCA
FT                 NIYSDNGTNFVGAARRLDEEFKKAVQDNVQVAPVLEREQISWHFSPPAGPH
FT                 FGGIWEAGVKSVKYHLKRVIGDSNLTYEELATLLCQIEAVLNSRPLYTTGE
FT                 DMDNNEVLTPGHFLIGRPTLEAAESISEEKIGNLDRWKLIQKMKKDFWLKW
FT                 KDEYLYTLQQRNKWRRTTENLENGQVVLIKDENCHPARWPLGKIEEIHKGR
FT                 DDKVRVVKVKLQEGSITRPISKICPLVGVKSSEDVEEKPYRKSTRFCNLSK
FT                 VGNVMMLAMLVLLCQLSNAASIKDNRPKITVKELNATAALYLDPMGEVEVV
FT                 ASSWDLVIYYDMSAYFEMLSQGDRMIPKLRDLCQKLYNFEDQCHFVLNSTV
FT                 KRITEIEANNRLFMSQNKPRSKRAPFEFMGSLYHILFGIMDADDRVQMEEN
FT                 MRSLLTNQQNLKHLEEKQTSIVDSTANILKTTIDEINDNFHNMNNRIENMT
FT                 ELLKESYYVYRESIQFFMIVRQLSSVVDECEKIQTGIINLLIDINHGRLNP
FT                 NILKPSQMKLEITKIKDKLSEALVLPGKRTGTELRDIYTLLTAKGIFIDRK
FT                 IIINAKIPLFGRHPSFLYKVIPVPVRLNNNQMVMVHIDSQYLIYNFEIDAY
FT                 HLMSESAMQKCRNWQSNRRTCEGSWPWSGANDNACELTPFKQNTKSNCLYT
FT                 TIIETRSYWVELDSSSSWLFKVPPKTKARVQCGNEQQEVLDIPEQGILSLR
FT                 SGCTARAEDKILVAHHSVQSESYIAIKTSHVGDISNIANIAWNPVEANIVN
FT                 HSAELERIGSQLKSLKEHHIELLGLNFHHVTGHASLMLVILLIIILIIVCL
FT                 RQLNKNKRIPIAPFGGPSQ"
XX
SQ   Sequence 7836 BP; 2877 A; 1266 C; 1723 G; 1970 T; 0 other;
     ttttggtcct tcgagaaaaa ggaactctgt agttttcccc caccagtggt aagagactca        60
     gagaatgaat cagctcctta aggtctgaat tcttacgata agatcagata aaggtagcaa       120
     aataaaaaac tcttgttttc ccccaccagt ggtaagagac agagtataat ataaaagcaa       180
     aatattgctt aataaataaa aaagtgcgtg cgaccgaata tataaaggca gtttggctag       240
     tcgagcaact gcaataattt cggcggcggt gaagaaaaaa atataaagtt ggtgtgtggc       300
     taagtcgaag cccacatata tatataaagt gaaaaaaaaa atataaagtt ggtgtgtggc       360
     gtattcgaag ccctaatatc gaaaaaagtg aactatatgt agttgcaaat tgccaactac       420
     caaaagcagc agagcaacaa gatagttgca aaggagaggc cgctggagaa tatacattgc       480
     caatagaaga aagtctggtg cgatgaccgg caccggtacc gcctgagccc ataggccctg       540
     gacaacagca gctgatcgag atagaaaaca aaaaaggcga gcaaactttc gctacgcagt       600
     ggcagacaag cagcggcaga taactctact tggcggacaa cagtggcgaa cggtgtctac       660
     aacaggatca tcagataaga tataaattaa aatagtttat attatattat attattaata       720
     ttatattatt atatatactt atactcttat accaatatcc taatatttga ataagacaaa       780
     aatgttcccc acaaaaactg aaaaactatt agcgaagcaa cacgagttgc ataaaagatt       840
     aaaaaagcta gaagagttag atgctagtaa gtttactagc aagattatta acgaagtaaa       900
     tgagatacag aagctatgga ttagttacca tagtcaaatg ctagagagtg gtgtaactca       960
     acactactat ttcacagatg ggaagtatga ggaaggttta gatatggcag ccaaattact      1020
     agccaaagga gagtctagca ggcagagcac tgttgtttct gaaaccattg aagcagatgc      1080
     aacaatgtca gaaaatgttg agggcagcaa cggagagtcg cggggaaacg cgacctccag      1140
     tattgagaac caggaaaagt ttgaagaaaa ggttcgtcat ctccagcaat atttggagat      1200
     ggtgagcaaa gatttacgta cgatagacaa tagaacaggc gaaatgtata ttaagaaaat      1260
     aaaattcttg ttcaggaagg tacaagtgtg ccaagcttat acacatgaat tatacagaga      1320
     taatgaaaca tttaaagagg tcatagaaga attggagttc gaccttcaga ataccttggt      1380
     agcattagaa gagaaaataa aggatcagaa aaatttgaaa gttgagaatg ttaccgtggg      1440
     aggcgaacta ccggtgttgc caaaaataca ggtacccaca ttttctggag aacctagaga      1500
     atgggacctg tttgtggaac tatttgcgga attaattgaa aaaagagagg atttaagtct      1560
     tactcttaaa ttcaattatt taaaatccgc attaaaggga gaagcgagga gcatggtggc      1620
     tcatttactg tcaggttcag ctgacaatta tagtgccgct tgggaactat taaccaagcg      1680
     gtatgaaaat aatcggaggg tattttccga acaattaagt cggatcgttg atttaccgat      1740
     gatcaacaat gaatccgcaa aaagtgtaaa aggagtgatt gacatagtta atgagtcaat      1800
     acacttaatt aaaattaaag caaatttgtc cgatgaagtt gacgtagtat tcgctcaact      1860
     gctgctaagg aaatttgaca gagaggctct acagttgtat gagagccaag ttagaaaaac      1920
     aagggaaatt caacagctat ctgatgtcat ggaatacttg gagcaaagat attgctcgct      1980
     aagtgccatg agaaaggaag agaaaaaacc gttacaaaaa acgtgggttg cgggttccaa      2040
     agatggttgt ccgatctgca aaggtccctg gcatagcgca tttctgtgct ataagtttaa      2100
     agcgctaaca cctaaagaaa gggtggaaat agccaaaaaa ttgcaactgt gtacacgttg      2160
     cttgaagcat tcaagcaaca agagatgcac taatgaaatg gtctgctcat tgtgcagcaa      2220
     gggacaccat acccttcttc actttgggga aaaacaggcg aaggtgaata cttgtgtaac      2280
     ggcagagcaa aaattgttgg ccacagccct aatacaagtt aaaaaaataa atggagaata      2340
     tgaaacatta agagccttga ttgataatgg atctcaaagc actattttat ctgaagaagc      2400
     cgctcaaatg ttaaagttac ccaagatcaa gaaacaaacg gaaataagtg gcgtatcttc      2460
     gacaaaacct agaacctcga agtatagggt aaatattgaa atgaagacgc gtgattctga      2520
     aatagaactt attaaggttg aagcaattgt attgcctcaa ttaatgaaag ctcttccgtt      2580
     aaaaatagca aacgtggata tgtcaaaatg gcatacttac gtgctagctg accccacctt      2640
     taataaacct ggtagggtcg atatgataat agggatagac gtatacaccc acatcttaaa      2700
     aagtggagtt gccaagatta gtggcctgct aggacaaaat actcaatttg gctggatcgt      2760
     gtcgggatgt acgaagtcaa aaggagatga gtctatagta gctacaacaa tagatattac      2820
     agatatggag cggttttggg aaatggaggc agatgaaaaa gatgatacag aagctagcga      2880
     atgtgaagaa aatttcaaca agacgactat gattgatgcc tcaggaagat atgtagtaac      2940
     gattccgttt aagcaagaaa aggaattagg tgactcgaag gcgcaggcaa ctgcgcgatt      3000
     tcttaacttg gagaaaaagt ttcagaaaaa tccaaaactt aaggaggagt acgaaaaatt      3060
     cattaacgaa tatttggagt tgggccatat ggtcgaaact aaggatgaag gtgcgtatta      3120
     tctgccacat caagcagtaa taaaagaagc aagtctgaca actaaattaa gagttgtatt      3180
     tgacgcttcc gcgaaaacaa cgaataacag aagtctcaat gatgttatgt ggatcgggcc      3240
     gcgacttcaa aaagacatat tcgacataat agtaaagtgg cgaaaatggc agtacgtagt      3300
     atctgcagat attgaaaaaa tgtatcgaca gataaacatt gatctaaacg atcaaaaata      3360
     tttgcatatt ttgtggcgaa tttcaccgca gaaaaaatta agaatatata aattgacaac      3420
     agtaacgtac ggtacggcat cagcacctta tttagccaca agggtacttg cagagatagc      3480
     aaacagatgt caagataaag taattagtga aattatccga tatgaattct acatggatga      3540
     tttaatgact ggaggtaata ccgtacaaga atcaaaacgc aaagttcaac aggtttccag      3600
     agagctggaa aaagcaggaa tgaatttgag aaaatggatt tcgaataagt ccgaaattat      3660
     tgaagaggtt attgatacag gcgataataa agtattaaaa attgatgaga acgaggcaat      3720
     taaaaccttg gggttgcagt gggaaccaat taaagacgaa tttaagttta aggtacactg      3780
     tgacgagagc agaaaggtga ataaaagagg tgtgctatcc acactagcca agatttatga      3840
     tccactaggt tggctagcac ctgtaacggt aataggcaag ttatttatgc agaagttgtg      3900
     gctagcagag caaaattggg atcaagagtt gtccgataac gaaacaacag aatggaaatc      3960
     cttcagggat aatttggtct atctggaaga agtcagatta ccccgatgga tcaagacaca      4020
     gcctaatatg ttgttacaga ttcatggttt tgctgacgct tcagaaaagg catatgctgc      4080
     ggtggtatat gctaaagtag gtgaggcagt tactttaata gccagcaaga acaaagttaa      4140
     tccaatcaaa aataggaaga ctattcctaa attagaatta tgtgcagcac acttgctgtc      4200
     gcaattacta caaagagtcc agcaatctat tgctgctcct tctgaaatat acgcttggag      4260
     tgactctact attacgctgt gctggataaa gaacggtgct agtaaagaaa aattcgtaag      4320
     gcgtcgcata gaggatattc taaaaatcag agaaataacg tggaaccatg taaaatctga      4380
     agataaccct gcagatgtag cttcaagggg tatttgtcca aataagttaa aagattgtga      4440
     attgtggtgg aatgggccaa ggtggctcgg tgaggcaaaa gataaatggc ctaaacaaaa      4500
     aacagacgat gacaagatta tggtaaattc cgtactatta aatacggaga gtagtattat      4560
     gcaggagctt attgaaaagt attcctgtat gaataagctg gccagaatta cagcatatgt      4620
     gttaagattt attggcatta aaaaaagaga taaagtgtac ccatcatact taaccgtcaa      4680
     tgagcttaag aatgctaaaa attttataat taaacagcaa caggcatatc aatttagcag      4740
     agagatatca tgtcttacgc aaaacaagca aattgacatg aaaagcaaaa ttttaagctt      4800
     aaatccattt ttggataacg atggaatatt acgcgttggg ggaagattgc aaaatgccaa      4860
     catatgtttt gatactaaac atcctgtgat tttggataaa tcacatctta caatgctgtt      4920
     gattaaagat gctcataagg aaaccttaca cggaggaatt aaccttatga gaagccaaat      4980
     tcaaaggaaa ttttggattt tcggattgag aaacgccctt aaaaaatacc taagggaatg      5040
     cgtcacatgt gccagatacc gccaagtaac tgcggagcaa attatgggta acctgcccaa      5100
     aaatagggta acggtgtcat ccccatttca taacacgggg attgattttg ccggtccata      5160
     tcatataagg tgctcaaaaa accggggaca aaaaacattc aaaggataca tagctgtatt      5220
     cgtttgcttg tcaactaagg caatgcattt agaagttgtt agtgacttga caactgatgc      5280
     cttcctagca gcatttcgaa gatttgttgc aagacggggt aaatgcgcta acatttattc      5340
     tgataatggt acaaattttg taggtgcggc taggaggctt gatgaagaat tcaaaaaagc      5400
     agttcaagac aacgttcagg tggcccctgt gctagagcga gaacagatta gctggcattt      5460
     tagccccccg gcaggacccc acttcggagg tatatgggaa gctggggtaa agtcggttaa      5520
     gtatcacctg aaaagagtta taggagacag taacctcaca tatgaggaac tggcaacatt      5580
     gttgtgccaa atagaagccg tgttaaactc acgtccgttg tatacgacgg gtgaagatat      5640
     ggacaacaac gaggtgttaa ctcccggtca tttcttaatt ggaagaccta cattagaagc      5700
     agccgagtcc atatcagaag aaaaaattgg aaatttagac agatggaaat taattcagaa      5760
     aatgaaaaaa gatttctggt taaaatggaa agacgaatat ctatatactc tccagcaaag      5820
     gaataagtgg cgacgaacca cagaaaactt agagaatgga caggtcgtcc tgatcaaaga      5880
     tgagaattgt cacccagcca ggtggcctct gggcaagatt gaggaaattc acaaaggcag      5940
     ggatgataaa gtaagagtgg taaaagtcaa attgcaggaa gggtcaatta caaggcctat      6000
     tagtaaaatc tgtccacttg ttggggtaaa atcatccgaa gacgttgagg agaagccata      6060
     tcggaaaagt accagattct gtaatctgtc caaagtagga aacgtaatga tgttagcaat      6120
     gttggtgctg ctttgtcaac tttcgaatgc agcaagcatt aaagataatc gaccaaaaat      6180
     tacggtaaaa gaactaaacg caacagccgc attatactta gatccaatgg gtgaagtgga      6240
     agtagtagcg tcctcatggg atctggttat atactatgac atgtcggcct actttgaaat      6300
     gctcagtcaa ggtgacagaa tgattcccaa attgagggat ttatgtcaaa aattgtataa      6360
     tttcgaagac cagtgccatt ttgtattaaa cagcacggta aaacgaatta cggaaatcga      6420
     agcaaataat agattgttca tgagtcaaaa taagccaaga agcaaacgag caccgtttga      6480
     attcatgggt tcactgtacc atatattatt tggcatcatg gatgcggatg acagggtgca      6540
     gatggaagaa aacatgagaa gtttactgac aaatcagcaa aacttgaaac atctagaaga      6600
     aaagcagaca tcgatagtag actctacggc aaacattctt aagacaacta tagatgaaat      6660
     aaatgataat tttcataaca tgaacaaccg aatcgaaaat atgacagaat tactgaaaga      6720
     aagctattac gtatatagag aatccatcca gttcttcatg attgtaaggc aattaagttc      6780
     cgtggttgat gaatgtgaaa aaattcagac aggaattata aatcttttaa tagacatcaa      6840
     ccatggtagg ttgaacccta atattttaaa accaagccaa atgaaattgg aaataacaaa      6900
     aataaaggac aagttgtccg aagcattagt gctaccaggt aaaaggacag gtactgagtt      6960
     aagagatata tatacgctgt tgacggccaa gggtattttc atagatagaa aaataattat      7020
     aaatgcaaaa ataccactgt ttggtagaca cccgtctttt ctttataaag ttattccagt      7080
     gcctgtacga ttgaataata atcaaatggt aatggttcat atagatagtc agtatttaat      7140
     atataatttt gaaatagacg cgtatcattt aatgtctgaa tcagctatgc aaaaatgtcg      7200
     gaactggcag tcgaacagga gaacatgtga aggaagttgg ccatggagtg gtgccaatga      7260
     taatgcttgt gagctgacac cttttaaaca gaatacaaaa tctaactgct tatacacaac      7320
     gattattgag acaagatctt actgggtaga attagatagc agcagtagtt ggttattcaa      7380
     ggtaccacct aaaactaagg ccagagtcca atgcggtaac gaacagcagg aggtgctaga      7440
     cataccagaa caaggaattt tgagtctcag atcaggctgc acagctaggg cagaagataa      7500
     aattctagta gctcatcata gcgttcagtc agagtcgtac atagctatta aaacttcgca      7560
     cgtaggcgat attagtaaca tagcaaatat agcatggaat ccagtagaag caaacatagt      7620
     aaatcattca gcagaattag aaagaatagg aagtcaatta aaatcgttaa aggaacatca      7680
     tattgaatta ctaggcttaa atttccatca tgtaactggt catgcttcct taatgttagt      7740
     catcttacta attataatat taataatagt ttgtttaaga caacttaata aaaataaacg      7800
     aatcccaatc gccccatttg gcggcccctc gcagaa                                7836
//
ID   BEL-6_DYa-I repbase;    DNA;    INV; 5475 BP.
XX
AC   .
XX
DT   03-NOV-2011 (Rel. 17.09, Created)
DT   03-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5475
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1789-1789 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. This consensus is very similar to
CC   DIVER2_I from Drosophila melanogaster, but there are some
CC   insertions.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(273..992,996..5474)
FT                 /product="BEL-6_DYa-I_1p"
FT                 /note="DUF1759, DUF1758, reverse transcriptase,
FT                 peptidase A17, and integrase."
FT                 /translation="MPAESDKNRVTFLKRKANALFSRLQRLQTSLSNETLS
FT                 GYDEPTLTVRLEQIDELQSAFNVLHTELEELDFDEIGSEMSESFDEFIVEF
FT                 KASVRAEIAKRNVHFAPHSTLAEGVVPHQCSGHQTQPRPRPMPLPPVQLPT
FT                 FGGGYANWADFYSVFTSIIDSHPDLSNIEKFQHLRSCLRDSALETIRSLEI
FT                 SNSNYEAALELLQKRFDNRRLVFQAHITEILGLKVVRNGSVASLRNCRTSR
FT                 SHSALKGLGTTEQIAGCIIVQVLLQKLDAASQAKWEERLEDPVFANLIPSW
FT                 ESMAAFLEQRCRTLEAVDCAMATYAPGVQVGRNRSTLVATTQNSLGCMLCH
FT                 SAEHAIYYCPQFRDLAPVDRLREAKRLALCLNCLKAGHQLRQCSSSRCRTC
FT                 GIRHHTLLHLDGPPSSQPHVPVSSSSHTEPSAPLSTSSTLIAQDLGSDLVL
FT                 LATATVLVQNRSGLFVPCRALLDSGSQLHLVTSRFANQLQLKRSRSSGSVT
FT                 GIGDSNFATDGFSVGIAMRSVTSDFSTSITAVIAPNITDRQPSFNVDIGDW
FT                 KIPENLQLADPEFHKAQRVDLLIGASLFYELLCVGQIKLLPGLPLLQKTRL
FT                 GWVVSGGCARPCGSALIASRVPSSASKENSIDVELDSLLQRFWEVENCPGP
FT                 IVQATKEELDCEAHFVKNYTRLPAGDYSVRLPLKLHLDSLGDSYPQALRRF
FT                 LSLERKLTKHPGLRVKYAAFMKEYRDLGHMSPVPASEVSSCRYFLPHHCVM
FT                 KEDSTTTKLRVVFDGSAATSTGYSLNDVLMAGPVIQPKLFHILIRFRSHPV
FT                 AVTGDICKMYRCVRVSQEDSYLQCIVWRDSPIDDLQVYKLDTVTYGTKPAS
FT                 FLSVRAMQQLSIDEQASFPIGSEILRRDFYVDDLISGSGTVKDAISIMQQT
FT                 AGILAKGKLKLRKWCSNIPLVLEGVPAEDKESFMKFEDGSDFTKTLGLAWD
FT                 PASDQLLFSFSAFQSPLRPCRRSVLSAIAKFYDPLGLVGPVITRCKIFLQQ
FT                 LCKEKLSWDESLPETHNTKWLDICRSFEIISHVSFPRFVFSAESGLEVHGF
FT                 CDASIDAYGACVYVVSKGNQSFSHLLCSKSRIAPLKTITVPKLELCGADLL
FT                 AKIMREIVGLKVFKGRYYCWCDSTVALSWIRDEPARFNIFVANRVAAIQEL
FT                 TDVTAWRYVPTALNPADILSRGSLPSELSESSLWAHGPAYLTEPERDWPTA
FT                 VCPDKPVLELRRSVFIVKSPYVDVIASSKFANSYPSLQRVFAYIYKFCNGI
FT                 RHPGLTVAHIQEGTQMMLRLVQRAQLWEDMQSLKTLGRVSSSSPISSLSPF
FT                 LDQFGLLRVGGRLRNSSLDFDGRHPKILPRSHPVTLAIISHYHESNLHAGP
FT                 RALLGAIRSQYWPIGGRKTVTKAVNRCIRCFRIKPRLIEHIMADLPKERLE
FT                 GSHAFEVAGIDFCGPFFHKSDTRNKPAVKCYVCVFICFATKAVHLELIKDL
FT                 STVAFLCGLKRFICTRRKPKQIWSDNATNFVGAKNELPELRRLFLSSEHQG
FT                 SVQNFCLSETIDWRFIPPRSPHFGGLWEAAVKTAKHHFYRAVGTAVLTFDE
FT                 LRTLVCHISAVINSRPLVPISENPADLDVLTPAHFLNGGPPSSFDEPDITG
FT                 LNYNRLDSWQRISFLQQIFWSRWKEEYLTLLQQRSKWRTPKPGVAVDNVVL
FT                 VKDENLPPMRWPLARVMQLIPGRDGVARVAELRTASGVIRRAVNKLCLLPL
FT                 EDSVGSQASNGGR"
XX
SQ   Sequence 5475 BP; 1270 A; 1341 C; 1419 G; 1444 T; 1 other;
     ttggtgaccc cgacgtgatm gtgttaattt gcatgcatta attaatgcac ttatcccgtt        60
     tataaataaa atataaatac attaaatcgc aatcggttgg acaagtgagt ggtgatttcg       120
     gtgatagtgg ctgtgtttaa gcgagctagc attacatata tacatacata cattgctaca       180
     tatatcgtta cgtgcattga ctccgcttgc attttcggca tttattttgt gctcatcttc       240
     ccgctgaacc gaattgaaag cgatttgttg ctatgcccgc tgaaagtgac aaaaacaggg       300
     tgaccttttt aaagcgcaaa gccaatgcgc tgttcagcag gttgcagagg ctacaaacgt       360
     cgctgtctaa tgagacgcta agcggatacg acgaacccac tcttacggtg aggctggagc       420
     agattgatga gctgcaaagt gccttcaatg ttctgcatac agaactggag gaattggatt       480
     tcgacgaaat tggcagtgaa atgagcgaga gtttcgatga attcatcgtt gaattcaagg       540
     ctagtgtgcg cgcggaaata gccaaacgca atgtgcattt cgcgccgcac tcaacgcttg       600
     cggaaggtgt tgtgccccac cagtgtagtg gtcatcaaac gcagccgcgg ccgaggccga       660
     tgccgttgcc gcctgtgcag ctgccaacgt ttggcggagg ctacgcaaac tgggcggatt       720
     tttactccgt gttcacgagc ataatcgaca gccatccgga cctctccaac attgagaaat       780
     ttcaacatct gcggtcatgt ttgagggatt cagcgctgga aactatccga tcattggaga       840
     tctcaaacag caattacgaa gcggctttag agttgcttca aaaaaggttt gataatcggc       900
     gtctcgtttt tcaggcgcac atcaccgaga ttctgggttt aaaggtagta cggaatggtt       960
     cagtggcatc gcttcggaat tgtcggacaa gttaacgctc acattcggcg ttgaagggtt      1020
     tgggcaccac tgagcaaatc gctggctgca tcatagtgca agtgctgctg caaaagctgg      1080
     atgcggcgag ccaagctaag tgggaggagc gcttggagga tccggtcttt gccaacctta      1140
     ttccgtcgtg ggaatcgatg gctgcattcc tggagcagcg atgtaggact ttggaggccg      1200
     tggattgcgc catggcaacc tatgcgccag gcgttcaggt gggcagaaat cgttcgacgc      1260
     tagttgctac cacccaaaat tctcttggtt gcatgctttg ccatagtgca gagcatgcca      1320
     tatattattg cccgcaattt agagacttag cgccagtaga tcgtctgcgc gaggcaaaga      1380
     gactagcact ttgcctaaat tgcctaaagg caggtcatca gctacggcaa tgcagctcga      1440
     gccgctgccg cacctgtgga atcaggcatc atacgctgct ccatctagat ggtccgcctt      1500
     cctcgcagcc acatgttccg gtgtcttcaa gctcccacac tgagccttct gccccgcttt      1560
     cgacttcttc tactctaatt gcccaggatc tcggtagtga ccttgtgctg ctagccactg      1620
     caaccgttct agtgcagaat cggtcgggac tgttcgttcc ctgcagggcc ttgttagatt      1680
     ctggctctca actgcacttg gtcacctctc ggtttgcaaa tcaactgcaa cttaagaggt      1740
     cgaggtcgtc cggctccgtc actggaatcg gggattccaa tttcgcgact gatggattct      1800
     cggtaggaat tgcgatgcgg tctgtcactt cggatttctc aacgagcata acagcagtta      1860
     tcgctcccaa tatcacggat cgccagccaa gttttaatgt ggacattggg gactggaaga      1920
     ttccagaaaa cctgcagctc gccgacccgg aatttcataa agctcagcgt gttgacctgt      1980
     taataggagc tagcctgttt tatgagctgc tgtgcgtagg tcagataaag ttgttgccag      2040
     gactgccact gcttcaaaaa actcgtctgg gctgggttgt gtctggaggc tgcgcgcgcc      2100
     cttgcggtag cgccttaata gcttcacgcg ttccttcttc agccagcaag gaaaacagca      2160
     ttgatgttga acttgattca cttctgcagc gcttttggga ggtagaaaat tgtcccggcc      2220
     caatagttca agccactaag gaggagctag attgcgaggc ccactttgtt aaaaattaca      2280
     cccgattgcc agctggcgat tactcggtac ggttgccgct aaaactccat ttggactctt      2340
     taggagattc ctatcctcag gctttgcgga gattcttgtc gctggaaagg aagcttacaa      2400
     agcaccctgg cttgagggtt aaatatgcgg cgttcatgaa ggaatatcgt gatctgggac      2460
     atatgtcgcc tgtgcctgcc tccgaggtca gctcgtgccg atatttttta ccacatcact      2520
     gcgtcatgaa ggaggatagc actaccacca agcttcgcgt tgtctttgac ggatcagctg      2580
     ccacttccac tggttactcg cttaacgatg tgttaatggc cggcccggtc atccagccca      2640
     agctatttca catcctaatt cgatttcgct cacacccagt tgccgttaca ggagacatat      2700
     gtaaaatgta ccgatgtgta agggtctcgc aagaagatag ctatttgcag tgcattgtat      2760
     ggagggactc cccgatcgat gaccttcaag tatacaaact cgacacagtt acctacggca      2820
     ccaaaccagc ctccttcttg tccgtaaggg ctatgcagca gttgtcaatc gatgagcagg      2880
     catcgtttcc cattggatca gaaatccttc ggcgcgattt ttacgtggat gatcttatct      2940
     ccggctccgg cacggtaaag gatgctatca gcataatgca gcagacggct ggcattcttg      3000
     cgaagggcaa gctcaagcta aggaaatggt gctctaacat tccgcttgtg ctggagggtg      3060
     tgcccgccga ggacaaggag tcattcatga agtttgaaga tggtagcgat ttcaccaaaa      3120
     ctttaggtct cgcttgggat cccgcctccg accagctatt gttttcgttc tctgcctttc      3180
     agtcgccatt gagaccctgc aggcgctctg ttttgtctgc gattgctaaa ttttacgatc      3240
     ctctcggcct ggtcggtccg gtaatcacaa ggtgtaaaat ctttttgcag cagctctgca      3300
     aggaaaagct gtcctgggat gaaagcctcc cggaaactca taacacgaaa tggcttgata      3360
     tatgtcgcag ttttgaaata ataagtcatg ttagtttccc tcggttcgtg tttagcgcag      3420
     agtctggtct tgaggtgcat ggtttttgtg atgcaagcat tgatgcctat ggagcctgcg      3480
     tttatgtggt ttctaaaggg aatcaaagtt ttagccattt gctttgttcg aagtcgcgca      3540
     tagctccgtt gaagaccata acagtaccaa agctggagct ttgtggtgcg gatcttctgg      3600
     ctaaaatcat gagggaaata gttggcttga aagtatttaa aggacgctac tattgttggt      3660
     gcgactcgac ggtggcactt tcctggatcc gagatgagcc cgccaggttc aacatatttg      3720
     tggcaaatag ggttgctgcc attcaggagc tgacagatgt cacggcttgg cgttatgttc      3780
     caacagcgtt aaatccggct gacatcttat ccagaggatc cctgccgtct gagcttagcg      3840
     aatcgtcact ctgggcgcat ggacccgcct atcttacgga gcctgaaaga gattggccaa      3900
     cagctgtttg tcctgacaaa ccggtgcttg agcttcgtcg aagtgtgttc atcgtaaagt      3960
     cgccgtacgt ggatgtaatt gctagctcca aatttgcaaa ttcttacccc tcactgcaac      4020
     gagtgtttgc atacatttac aaattttgta atggaattcg tcatcctggg ctcaccgtcg      4080
     cacacattca agagggtact cagatgatgc tgcggttggt gcagcgcgcg cagttatggg      4140
     aggacatgca gtccctaaaa acgctgggaa gagtttcctc gtctagtccc atatcctcgc      4200
     tctcgccgtt cctggatcaa tttggacttc ttagagtagg cggtcgcctc cggaattcgt      4260
     cattggactt tgatggccgc cacccgaaaa tccttccaag gtcccatccg gtgactctgg      4320
     caattatttc gcattaccat gaaagcaatc ttcatgccgg acctcgagct cttctgggtg      4380
     caattcgatc ccaatattgg cctattgggg ggaggaagac ggttaccaag gccgtgaaca      4440
     gatgcatcag atgttttcgg attaagccgc ggctgataga gcacataatg gcggaccttc      4500
     ccaaggagcg cttggaagga tctcacgctt ttgaggttgc tggtatagac ttctgtggac      4560
     ccttctttca caagtcggat actcgcaaca agcccgcggt taaatgctac gtctgcgtat      4620
     ttatatgctt tgcaaccaag gcagtgcacc tggagctgat caaggatctc tcgacagttg      4680
     cgtttctgtg cggactcaag aggttcatat gcacccggcg gaagccgaag caaatttggt      4740
     cagacaacgc caccaacttt gtcggcgcca aaaatgaact tccggaactt cgaaggttat      4800
     ttctcagcag cgagcatcaa ggctccgttc agaatttttg cctttcggag acgattgact      4860
     ggcggttcat ccctccacgg tcgccccatt tcggtggact ttgggaagca gcggtgaaaa      4920
     cggccaaaca tcatttctac cgcgctgtgg gtacggcggt tctgaccttc gacgagctga      4980
     ggacgctggt gtgccacatc tcggcagtta ttaactccag acctttagtt cccatttcag      5040
     agaaccctgc cgatctggac gtcctcactc cggcgcattt tctcaatggt ggtccgcctt      5100
     cgtcgtttga cgagccagat ataacgggcc taaactataa tcggcttgac tcttggcagc      5160
     gcatctcctt tcttcagcaa atattttggt cgcgatggaa ggaagagtac ttgacgttgc      5220
     tccagcagcg ctccaagtgg cgcaccccaa agcctggcgt agccgtggac aacgtcgttc      5280
     ttgttaagga cgagaatcta cccccaatga gatggccttt ggcgagagtc atgcagttga      5340
     ttcctggcag agacggcgtc gctcgagttg cagaattgag gaccgcgtct ggagtaataa      5400
     ggcgggcagt gaacaagctg tgtctgcttc cccttgagga ctctgttgga agccaagctt      5460
     ccaacggggg gagga                                                       5475
//
ID   BEL-6_DYa-LTR repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   03-NOV-2011 (Rel. 17.09, Created)
DT   03-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-385
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1790-1790 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. This consensus is ~97% identical to
CC   DIVER2_LTR from Drosophila melanogaster, but the internal portion
CC   is different from that of DIVER2.
XX
SQ   Sequence 385 BP; 98 A; 94 C; 74 G; 119 T; 0 other;
     tgttgggtca cgcagccgcc aaaactgtgc agtagactaa tctcatactc tttaatattg        60
     taagccgaag tagtcagtgg tagcagttgc gatgcccata gtgcaaaccg ctgttctcgc       120
     acgcatttat ctgtacggcg ctcattcctt gttctctttg ttatctacct acgttaagct       180
     tgggcgctgc atttcggctg tctgtcccgc caattgtcac ttcttcgttt ttcggcaaag       240
     actcaacttg tgcattcgat atagctcttt gtcggcccta gctgccgtaa acaattcgca       300
     aaataaacag tatcggaaaa taaacaaact ttcttcggct atttattatt cgcaacagct       360
     attgaaaaag ctcaatagct aaaca                                             385
//
ID   BEL-6_FoCa-I repbase;    DNA;    INV; 4823 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4823
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2587-2587 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. The ORF is broken.
XX
SQ   Sequence 4823 BP; 1660 A; 932 C; 971 G; 1255 T; 5 other;
     tggtctcgcg aacggtgcaa ttataaataa gactaataat tgtgaacact aattttttcg        60
     atataagcga attcctttga ggtgataatt tatctatcgt gtgaattaag tgatttacgt       120
     tagttctcgc gcagtattta gtctttctaa aaattaatac tggtaaggtt ttcacaaaca       180
     atctttagtc cgtattttga agttaaaatt aagtgtttta accaaatcaa aatgggcaaa       240
     cttgatgact tgcggggggt gagggacatg attggcaaga aatttaagtt ttatctcgat       300
     caagctaagg atcatgctac tcacccaatg gacctcgcca ccgttgacac atatcttaaa       360
     gaagttagtt tatggtcaaa tacactagac gatgggtttc agcaaattac gatactgaac       420
     ccaagtgatc tagacgacga tacagacgcc tacatgctgt tgtataaaac tgtgcgtcaa       480
     gtttcagtgg cactgagaga cgtaagaaat acagttattc cggcaacggc taccagcggc       540
     tccacaccaa ctgtagttta cactaatgtg aggttaccta aattggaaat tcaaccattc       600
     cacggtaact atttggagtg ggctacattt aaagactcgt ttgaagcagc agttcattcc       660
     aatgcgagtg tctcgaaagt ggagaaattt acttacctca aagcgttact gaagggagaa       720
     gctggccgct atactgctga tttacccctg acagatgcac attacgatca ggcttggaag       780
     caattacatg atcggtacga aaacaagcgt atgattgcct ttgctacctt ggataagttt       840
     tgctctcagc caaaagcaac agcaacgtca aaatccgtca aagcccttat cgatgccgca       900
     aatagatgta tcagatccat ggagcttctt cattgtaatc tggatgtaca tgcagaacaa       960
     ttttacatct atcacatcgc aagcaaactt gatcctgctg caaaagactt gtgggagcat      1020
     agtcttaagg acaatgacat aatcaaattg gcggacctaa tttcattttt agaacggcat      1080
     gccatggcgt tagaaaatac tgcgtatgtt gcatcaaatc agaaatcagg gtctgaaaag      1140
     aagacagcta ccgtgcacca cactcaagca ccaactaaaa aatgtaagat gggatgtagg      1200
     gaaaatcatc cactatwcaa atgcagagaa tttaagggtg caacgatgac gggcgcttgt      1260
     aaaaagggaa aaattatgtt atatttgtct actacccaaa catggcatct gtgacagtcc      1320
     ttttagatgc aaaaagtgta atcagcaaca tagttattta cttcacaata acgccgctga      1380
     gaatcaacga aatgatgctc aaaatcaaaa tattgtcagc atctcatcca accagagacc      1440
     aagtctggtg aaaagtgtcc agtttcgacc agccgcaaca aagttccagc caaccattaa      1500
     aatttattat gcttgactct tgcccagcag aagcgtgaga gagtgcaaag gcagcttatg      1560
     tgagattgta agaacacgta tgtcatagat ccttaagtag tgggggagag agaaaacaat      1620
     atgaaaaggt tgacattgta aagtggatta ttgggttttt ggacagcaaa gtggaaggag      1680
     ggaataacgt atatgtagtc agaccaccaa atactgcgtc tcaagctgcc ctttattggg      1740
     acacaaatgt ccaccacttt tcacacatga gtttcatcct ctctcgagag aaataaatat      1800
     caccagtcca caaccactga aaatcatttt tgcgtagttt attctttgca atagttacga      1860
     atcgcacgcc cataataaat tagccacatt tacaaacata attcagtcgt ttctcataat      1920
     atgcacacgc aagcwaacta taattctcgg agggaacgga attatgaacg acagcaagga      1980
     aatcagcaac aagctgaaca tcaacaagaa agaactagcc aggtatttca cacccagggg      2040
     aggagtgaag gcatctcttc aacttcaagt aatggaggat ccagcttgtt ctacaacaat      2100
     tctgaatgac tagaaacgcc ttcagattgc tatccaataa tagcaacagc ctgtgtggcm      2160
     atcaagaata atttaaatga atttgtsaac tgtaaaacat tgttagataa tgcatcaaca      2220
     aataatttta taactgcatc atgcgccaat cggctaaaat tacgaaaacg aaaaacctat      2280
     gtaccaatta gtggactagg tcaaactcaa gtcggatgtg caaagggaat cgtgaatatt      2340
     accttttttc cacatttcga taaaaataaa actttccata tggaagctta cgtggtacca      2400
     aaaattagta ggttaccaat tgcgaagata ggtgaaagca ctgtcagccg tcttcataat      2460
     caaataatca aaagtaaaac aaataatcaa ctcgcggatc cgacatttca aaccccagct      2520
     gatatcgata tattaatcgg agctgaactc ttttataata taatcgatgg ggagaaggaa      2580
     ggggattcca ctggaccgat cgcaattaat tcacaattag gatggttaat tggcggcggc      2640
     cgaactaata ataaaaatga gatgaaattg tatcatactc aaattaataa atcaattgaa      2700
     aatgaccaga atttaaagct ggatgcatta ttaaaaagtt tctgggaaat agaaaaagtg      2760
     caagactcac aactgctcag tgctgaggaa aaacggtgtg aggaccattt taaaaatact      2820
     gttcaaagaa ccaaagcggg tgagttcatt gtgaaatacc catttaaaac tcctaaagtg      2880
     cagttagggg aatcattaaa tattgcaata aatcgtttca agcaagtaga acggcgactc      2940
     cataaaaata aacactatgt tgtagaatac aaaaaattta tggatgacta cataaacttg      3000
     gggcatatga tagaagtgcc accaccaaac aaagatagcg aatttagatg ctatttaccc      3060
     caccattttg tgttaaaaga atcatctacc acgaccaaat ttcgcgtagt atttgacgca      3120
     tcagctaaaa cgtctaacgg cctctcattg aatgatacaa ttatggttgg acctactgtt      3180
     caagacacat tagcaaactt aataatgaga ttccgaaagc ataaaattgc aataaatgct      3240
     gatattgaaa aaatgtacag acagatcctt gtatcgagtg atgatcaaga atttcaacat      3300
     attgtgtgga gggaatcgcc agatcaacca cttaaacatt ataaattact aacaattact      3360
     tatggcacgg ctgctggtcc atatttagct actcgtgtgc taagcgagtt agcaaaacaa      3420
     gttgattttc caattgcatc accagtgtta caagaagatt tctatatgga tgatttattg      3480
     tctggagctg acactgaaga gaatgcagta aaacttcagc acgaaatcat tgaactattg      3540
     aaacgttgcg gaatgtcaat cagaaaattt acttcaaatt ccacctgcca ccgcatcaca      3600
     gaattacagc gatgataatw gaaaatgcgc atttgttgaa cctacatgct ggttcacaaa      3660
     ctttattatc ttatctacaa caaagatatt ggattgttcg aggaaaggat gctgtgagga      3720
     ggatcattcg aaaatgtgtc atctgtacaa gaaatcgagc agaaaccatg caacagatga      3780
     tggcagatct accttcattt cgagtaactc catcccatac cttccagaaa tgtggaatcg      3840
     attatgctgg acctttcttg attcgaccca ttacacccag aagtaaggtg acattaaagg      3900
     catatttagc gatattcatt tgctgtgcga ctagagccat acatttagaa gttgttagtt      3960
     cggccagcac tgaagcattt atagctgcct ttagaagatt catagctaga cgtggcaagc      4020
     catcagacat gtacagcgat aatggcacaa attttgtcgg agctgacaag gaactaaagg      4080
     agttgcaaaa acttaccgac agtgtaagcc acaataatca gatcgcattg acaatgtcta      4140
     aggaaggaat atcttggcat ttcaacccac cttcagcgcc acacttcgga ggactctggg      4200
     aggcaggggt gaaatcgacc aaataccatc ttagaagaat aatgggatta aatcgattaa      4260
     cattcgaaga gctgacaact cttacaagcc agatcgaggc agtgctaaac tcaagaccat      4320
     taacgcctga gtcaactgat ccatcggatt taagagcact gacacctgga catttcatca      4380
     ttggtcaacc attgacgtcg atccctgatc cggatttaac tgaaatccca acgaccagac      4440
     tcgtgagatg gcagctagtt caacagatgc tacaacagtt ctggaaaaga tggtcatctg      4500
     aatatatcgt cagactacaa caaagaccaa aatggatgca accagtggaa tccattaaag      4560
     aaggctcact ggtaataatc aaggaagata acttgccacc attacattgg aaacttggac      4620
     gagttatgga agtcaaacca ggagcagatc agaaggtcag gaaggtactg gtgagggcag      4680
     ctactggaga gtacgagcga ccgatcgtaa agctgtgcct actacccgtc gaaacagaaa      4740
     acgctgatct gaagactgag aattaatttt agttagtatt aagtaatatt attttggaac      4800
     tagttagtcc aagggggccg gaa                                              4823
//
ID   BEL-6_FoCa-LTR repbase;    DNA;    INV; 861 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-861
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2597-2597 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 861 BP; 298 A; 155 C; 147 G; 258 T; 3 other;
     tgttcagatt cctaatatgt aggaatatga atgcaattgg agttgtaatg tgtagtttgc        60
     attttgtgtt cagtttgcat ttaagatgca gattgaacgc aatttacatt ggttttgcag       120
     tagaagcaaa ccgaagcatg caaatcaatg ttttgcaaca cagaacactg gcagtgatgg       180
     caagtccaca tcttgcaaac tcatcttatg cagactgagt tgtccagctt tgtagtttgc       240
     taaacaggta gaaatggtag tatgtaatgt atgcatgcat ttgttccaat gttgaacaaa       300
     ccaatgtgtt tatgtatata atgcgcaaat agacttattt tagctgggaa atgaamtgtg       360
     wkatttagca tacacgggtg cttttccgtc cgctctgcag tataaagcta gccacggacc       420
     aaagcccgcg taacgcccat ttaatctttt tgtaacagag ggttgttctg cacaagagtg       480
     aatcgcaaat ctcagattgc cccaaatggg aaattgagat tgcaaattac ttgtatcaaa       540
     ttacccatca aagtagttgt atcaagttac ctatcagaaa tagttgtatc acattacccc       600
     aaatcaacta atagaaatag tatcatacac agtttgtatg tactaattaa ttgaaacata       660
     aataaaccag ttaatattaa tataaaatta accaattgaa gttaactacg aaatcattta       720
     cacaaccata gagctttatg ctaagaaact ggtgcacact aattcaagtt gcgctacact       780
     taacatacac acactcataa attaaccaac gtgaatttac aactcacaca cctcataaga       840
     atttacttac gaataaaaac a                                                 861
//
ID   BEL-6_LH-I  repbase;    DNA;    INV; 5818 BP.
XX
AC   ADOQ01010777;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_LH_;
KW   BEL-6_LH-LTR; BEL-6_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5818
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010777; Positions    7184    1367.
XX
CC   Positions [4671-5255] - Integrase core
CC   'AAAAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(777..3473,3477..5645)
FT                 /product="BEL-6_LH-I_1p"
FT                 /translation="MSDQSDSQLNVRLPKLNLPTFSGRYHEWFPFFDSFNS
FT                 VIHSNPSLSNIQRLQYLKASLADDACNVISSLEISDRNYDVAWNLLKDRYD
FT                 NKRVIVHTHIKAIMELPSINKENAAELRQIADGATRHIQALQALKRPTQHW
FT                 DDLLVHILASKLDAITLREWQASLVGTDPPTFRQFSDFITHRCQMLEATCN
FT                 TINATRANTSKRTATNTKRQTVCVATVKSKCTFCDGEHAIYYCKDFLALPI
FT                 AKRISETQGHKICSNCLRSSSHASSKCPSQGCKICKAKHNMLLHQFENKPE
FT                 ERSNNSDSHKEPVATSHQAVLTTHARSSSDARHVMLSTAVVDAFSKDRSPV
FT                 ACRVLLDSGSQANFISRECVKTLKLQPQPLNVSISGINKATTKSTHAVQVK
FT                 LQSRFNSYNVTIQCIVTDQITCKLPTLTMKRDVYDLPRNLKLADPQFNVSA
FT                 EIDVLLGAEVFWDLLCVGQIKRSTEHPTLQKTHFGWILAGCLSSDKKQAQE
FT                 VQSFHATITNTQLHEQLSRFWQIEDIHHTSGYTAEETLSERHFLDNVSQNS
FT                 KGRYIVKLPIKESKAVNLGQSKDIALKRLLHSERRLSRNPGLKMQYVRFMN
FT                 EYLTLGHMKRVDVSPSEDSMSYYLPHHCVFKGSRQSSKIRVVFDASCKSST
FT                 GVSLNDVLRVGPVVQQDLMSIVMRFRTTAYVMVADIIKMYRQVLIHPSQTC
FT                 LQRILWRSDSSSDIGTYELVTVTYGTSSASFLATRCLKHLAEKHSADYPIG
FT                 SRHVQRDFYVDDLLTGADTLQDARAARDEIISLLKLGSFELSKWASNCPQL
FT                 LDAIDDQNNGLISIRDGADSHILGIQWNPITDTFHFSYETEMEHNAVSKRF
FT                 ILSKVARLFDPLGLLGPTIVIAKLILQDLWKSGVHWDESVPQTIHTWSTLK
FT                 SQLNELNQLTISRRVKFSASLQDLQIHGFCDASQHAYGASVYIRTRVNSNE
FT                 YRSELLCSKSRIAPLKAISLPRLELSAALLLARLIDKIRTSINARDIRTHL
FT                 WSDSTITLNWIASSSRKWSVFVANRVGEIQRLTELGSWRHVPSAQNPADVL
FT                 SRGLNPRDLINATLWWHGPAFLQFDDTSWPTTELTCFDDQAPELRKVCNVA
FT                 ALENDIVLNILAKNSKLERACRIVSYCLRALNKHSRPPSLLISHVEISAAL
FT                 LLMCKITQRHFFPQEYRSLSKNETIPTSSKILSLSPFMDERRLIRVGGRLK
FT                 NSELSFDARHPILLPSNHDLTKRIIMREHIRNMHSGTQATMAAVRQQFWPL
FT                 TLRSVTRKIILGCVKCFRTNPTFSEAPMSSLPASRVTVSRPFSHCGLDYAG
FT                 PMILREGKKRNARNHKAYVAIFVCFAVKAVHIELVSDFTSDVFIAALRRFI
FT                 SRRGKPSHIYSDNGTTFVGAKNQLNEFFEFLSKNQTQADVIQFLCDQQTYW
FT                 SFIPPNAPHCGGLWEAAVKSAKHHSNRIVGRAHLTFEEMQTVLCEIEAVLN
FT                 SRPLFALSADPNDLSYLSPGHFLIGTVINDFPSHDLSDVNENRLIRWQRVE
FT                 QLRQHFWRRWSLEYLHSLQARSKWRVNKGTQLKPNQLVLVKQLDLSPLHWL
FT                 LGRVQEVHAGTDDIIRTATVKTAKGFLTRPLTRLAILPVETLDTVTETSNR
FT                 STPT"
XX
SQ   Sequence 5818 BP; 1722 A; 1453 C; 1240 G; 1403 T; 0 other;
     aattattggt ccttcgagcc ggataatcta aaaatccgag cttttcgaca aagggacaac        60
     gaggcttcgc gaccaagcga gcaaattcct cggccctcag caacaaacgg tgtcacgacc       120
     acatccttga atcatcatca aggcgctgca accaagcagc cttccggtgc atttccattg       180
     cgccaacatt ttccggacat ctcgagaacg accacgagtg aatggaggcg tcaaccggac       240
     atctcgccaa acgcagccaa tctcccagcc ggtcgacgag catctgtaat ccaccacaac       300
     acgcggacaa ggattgcagg gcgacggtca caggaccaaa ggaccatcgc gggacaacga       360
     ttcagccatc tggcgcgtgc cggtaagggt agtcattcta taacggtgcc aatccaaaat       420
     aattcgttcg atatctcaat tacgttcgat tcaaaataga ttaagatcct gtcgttatca       480
     aaaaacaacg tggaattatt aaaagtgcgt gcacgcggat taaaacatat gtaaattcaa       540
     tcgcttccgt gacaccaacg gtcatagctc aactcgagga gcgcaaattg aaattaaacg       600
     aatattggtc gacatacaat gagttacaat ctcgcatcga attaatcgac gaaaataaag       660
     ctaacgatcg tattaatttc gaagaggcct attattcgct ctctgccaaa attcgtgaga       720
     tactcaaccc tgtgaatccg tcgcgtaacg caataagttc tccgtccacc tcgcgcatgt       780
     ccgaccaatc agattctcag ctcaatgttc gattgcccaa gctaaattta cctacgtttt       840
     ctggaaggta tcacgagtgg ttcccatttt tcgactcctt caattctgta atacactcga       900
     atccatcgct cagcaacata caacggttac aatacttaaa ggcctcattg gctgacgacg       960
     cgtgcaatgt aattagctca ttggaaattt cagaccgaaa ctacgacgtc gcatggaatc      1020
     ttttgaaaga tcgctacgat aataaacgcg ttatcgtgca cacgcacatc aaggccatca      1080
     tggaattgcc atccataaat aaagaaaatg cagccgagct aagacagatt gcggacgggg      1140
     caaccagaca catacaagct ctccaagctc tcaagcgccc cacacagcac tgggacgatc      1200
     tgctcgtaca tatcctggct tctaaattag acgcaatcac gctacgagaa tggcaagcct      1260
     cattggttgg cacggatcct cctacattca ggcagttcag cgattttatt acacaccgtt      1320
     gccaaatgct tgaagctacg tgcaatacaa ttaatgccac aagggcaaat actagcaagc      1380
     gcacagcgac caatacaaaa cgccaaacag tctgcgttgc cacggtcaaa tccaaatgta      1440
     ccttttgcga tggtgagcat gccatctact actgcaagga tttcttagcg ttgccaatag      1500
     caaaaaggat atcagaaact caaggtcaca agatctgcag caattgccta agatcctctt      1560
     cacacgcatc tagcaagtgc ccctctcaag gttgcaaaat ttgcaaggcc aagcacaaca      1620
     tgttgctgca ccaatttgag aataaaccag aagagcgttc caacaattcg gatagccata      1680
     aggaacccgt cgccacatcc catcaagccg tcttgacaac acacgcacgc agttccagtg      1740
     atgcaaggca tgtaatgcta tccactgccg tagtggatgc cttcagtaag gatagatctc      1800
     cagtagcctg tcgcgtattg ctggacagtg ggtcacaggc caacttcatt tcaagggagt      1860
     gcgtgaagac tctcaaacta caaccgcaac ccttaaatgt atcaatctct ggcataaata      1920
     aagcaacgac gaaatctacg cacgcagtcc aagtgaagtt gcagtcacgc ttcaactcat      1980
     acaacgtaac catccagtgc attgttacag accaaattac ctgcaaactg ccaacgctca      2040
     ctatgaaacg agacgtttat gatcttcctc gaaatctaaa attagcggat ccacaattta      2100
     acgtgtcggc ggagattgat gtactcctag gagccgaagt attctgggac ctgctatgcg      2160
     tgggacagat taagcgatcc actgaacatc cgacattaca aaaaacacac ttcggttgga      2220
     tattggcagg ctgtctgagt agcgataaaa aacaagcaca ggaagtacaa tccttccatg      2280
     caactatcac caacactcag ctgcacgaac aactgtctcg gttttggcaa atcgaagaca      2340
     ttcaccatac ctccggatac acggccgaag aaactctttc agaaagacac tttctggaca      2400
     atgtatccca aaattcaaag ggcagataca tcgtcaagct gccaatcaag gaatcaaagg      2460
     ccgttaacct aggacaatca aaagacatcg ccttaaaacg cctgcttcat tcagaaagac      2520
     gtcttagccg gaatccaggc ctaaagatgc agtacgtccg atttatgaac gaatacctga      2580
     ccttaggaca catgaagcga gtagacgtgt caccgagcga agattcaatg tcctattatc      2640
     taccgcatca ctgcgtgttt aagggatcaa ggcagtcgtc aaaaatccgc gttgtcttcg      2700
     acgcctcgtg taaaagcagc actggcgtat ccttgaacga cgtcctcaga gtagggcccg      2760
     tcgtacaaca ggatctgatg tccattgtta tgcgcttccg tacgaccgct tatgtaatgg      2820
     tggcggacat aataaaaatg tatcgccagg tactgataca tccatcgcag acatgcttgc      2880
     aaaggatttt atggcgcagt gattcatctt cggacattgg gacgtacgag ctagtcacgg      2940
     tcacctacgg tacgtcgtct gcatcgttcc ttgctacaag atgcttgaaa catttggcag      3000
     aaaaacactc ggcggactat ccaatcggtt ccaggcacgt ccaacgtgat ttttacgtcg      3060
     acgacctact caccggggcc gacacgcttc aggacgcaag ggcagctcga gatgagatca      3120
     tatcgttgtt aaaattgggc tcgtttgaac tcagcaagtg ggcctcaaat tgcccacaac      3180
     tactggacgc gatcgacgat caaaacaacg gcctgatttc tattcgtgat ggcgcagact      3240
     ctcacatact aggaatacaa tggaatccaa taaccgacac ctttcatttc tcgtacgaaa      3300
     ctgaaatgga acacaacgca gtatccaagc gattcatact gtcgaaagtc gctaggttgt      3360
     tcgacccgtt gggtcttctc ggaccgacca tagttatcgc caaattgatc ttacaagatt      3420
     tgtggaaatc aggcgtgcac tgggacgaat ccgttccaca aaccatacac acctgatggt      3480
     caacgctcaa atctcagttg aacgaattaa accaattaac gatttcccga cgtgtcaagt      3540
     tctcagcaag tcttcaagac ctacaaatac atggtttctg tgacgccagt caacatgcct      3600
     acggagcaag cgtctacata cgcacaagag tcaattctaa cgagtatagg tctgagttac      3660
     tttgctcgaa gtcgagaatt gcaccgttaa aggctatatc gcttccacgt ctggagttat      3720
     cagcagcgtt attgctagca cgcctaatcg acaagatacg aacatcaata aacgcaaggg      3780
     acattcgaac acatctctgg tcagattcaa caataactct gaattggatc gcctcatcat      3840
     cgcgcaaatg gtcagtcttc gtagccaata gagtaggaga aattcagagg ctaacggagc      3900
     tcggaagttg gcgacatgtt ccgtctgcac agaatccagc ggacgtgctt tctcggggcc      3960
     tcaaccctcg cgacctaatt aatgccactt tatggtggca cggtccggcc ttcttgcaat      4020
     tcgacgacac ttcgtggccg accactgaac ttacatgttt tgatgaccaa gcgccggaac      4080
     taagaaaggt ttgcaacgtc gctgctctgg aaaacgacat tgttctaaac atattggcca      4140
     aaaattctaa gctggaaaga gcttgccgta tagtctccta ttgtctaaga gccttaaaca      4200
     aacactcaag accaccctct ttattaatat cgcacgtgga aatatcagcg gctctattgc      4260
     taatgtgcaa aataactcaa cggcatttct tccctcagga atacagatca ttgagcaaga      4320
     atgagactat acctacctct agcaagatct tatcattatc gccgttcatg gacgaacgca      4380
     gattaatacg cgtggggggc agattgaaaa actcagaact atcctttgac gcgcgtcacc      4440
     caatactcct gccgagcaat catgacttga cgaaacgaat aataatgaga gaacatataa      4500
     ggaacatgca ttcgggtact caagctacca tggccgcagt caggcaacaa ttctggcctt      4560
     taactttacg atccgtcact cgaaaaatca tcttagggtg tgtaaaatgc tttagaacaa      4620
     acccaacgtt ttcagaagca ccaatgagct ctttacctgc tagtcgcgtt acggtttcca      4680
     ggccattctc acattgtgga ttggactacg ctggtccgat gattctgcgg gagggtaaga      4740
     aacgaaacgc gcgcaatcat aaggcttacg tcgcgatatt cgtctgtttc gcggttaagg      4800
     cagtgcacat agagctggtg agcgatttca cttccgacgt gtttatagct gcacttagac      4860
     gttttatatc tcgcagggga aaaccttccc acatttattc cgacaacgga acaacattcg      4920
     tcggtgctaa aaatcagctc aacgagttct tcgaattttt gagcaaaaat caaacacagg      4980
     cggatgtaat acagttcctt tgcgatcaac aaacctattg gagcttcata cctcccaatg      5040
     cccctcactg tggtggccta tgggaggcag cggtcaaatc cgcaaaacac cactcaaatc      5100
     ggattgtagg cagggctcat ttgactttcg aggaaatgca gactgtactc tgtgaaatag      5160
     aggcagtttt aaattcgcgg cctttgtttg cgttaagcgc ggatccgaac gacttgtcgt      5220
     atttaagtcc gggtcatttc ttgattggca ccgtcataaa tgatttccct tctcatgatt      5280
     taagcgatgt taatgaaaac cgtctaataa gatggcagcg agtggagcaa ttgaggcagc      5340
     atttttggcg tcgatggagt ctcgagtacc ttcactcatt acaagcgcga tcgaaatgga      5400
     gagtaaacaa gggcactcaa ctgaaaccca accaactggt tcttgtaaag caactggacc      5460
     tgtctccatt acattggctt ttaggccgcg tgcaagaggt tcacgcaggg actgatgaca      5520
     taatacgtac agctaccgta aaaaccgcca aagggtttct tactagacct ttaaccaggc      5580
     ttgcgatttt gcctgtcgaa acgcttgaca ctgtcacgga aacttccaat cgttccacac      5640
     caacttagat tagcatcagc gaattaatta atagtttctt aggattaagt catagcgtta      5700
     cttatttagg agacaagtta aaggaaagag agaaagcaca gcgttttctt ttgtatttat      5760
     cgccacttac tcatgttaat ttacctaatt gaaggcgtta ccttcaaggc gggcggcg        5818
//
ID   BEL-6_LH-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   ADOQ01010777;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_LH_;
KW   BEL-6_LH-I; BEL-6_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-319
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010777; Positions    1366    1048.
XX
SQ   Sequence 319 BP; 77 A; 72 C; 65 G; 105 T; 0 other;
     tgtatggtac acgaacaata tattttaatt tgtgttattt tgtatactcg cgctttttct        60
     ccgtacgcga gctaccgagt gttttcgcta ttctgttgtt attgccacga tggctcgcga       120
     gtgcgcgcgc tttccgatag cgtcactacc tgacttccgt cttcttgctt gcattgcaac       180
     acgtgaaata aataagttct ttgtcgaaaa gtgcaataaa tatatttaaa acttaagaga       240
     agtgtctatt tctcggccac gtcgtcctcg atgcaatctt ccgtggacaa ccgtggatat       300
     cgtacgacag tacgcaaca                                                    319
//
ID   BEL-6_MoPha-I repbase;    DNA;    INV; 5845 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5845
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1133-1133 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           352..5805
FT                 /product="BEL-6_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSMEKLRKQRSLLKGKMTTIRNFIIKATTETAPEEVT
FT                 ARLQAVEEIYTRFQGISEQILTIDEADPADQAEDNEFDERYYSTKAALAQL
FT                 LDKLKPRSGEPSVSGTRGSAGDTKIMQILEQQANLIQKLAERNDNETLART
FT                 LEHQGQLLERVNTQSSTSVREAHVKLPTMKLPTFDGNIEEWKRYSDTFKTL
FT                 IHDSELSDVQKHQYLVGSLSGSAAKIIESIEISGDNYFIAWELLRERYDDK
FT                 KGIKKRHMQCLLNELPKIRQESADTIQELVDHVQKHLRVLQAMKLPTDQWG
FT                 DIIIFLIEKNLDSTTRRRWEEHIEDKENITTSTMMEFLRRHSQLLRRAADD
FT                 SETGTSRNSVGKDNSDKQRTTSTKVRNNAALATTTREGRCYLCQGQHLIYG
FT                 CAGFLNLSVEDRIKEIKRLRLCLNCLRPDHFSRHCRSSSCRECGERHNTLC
FT                 HIKRRPLGSSAELTRSSSEDSSEASVGATLCSMASTEGRLRTIDLRSSEGA
FT                 YHQRVKDQRKRILMATAIVNVATASGDLKLRVLLDSASELNFVTSAACRRL
FT                 NLNLDNIQEHISGLSDMKCTINHGCRLSINSRMSNFNLNLYCLVVPQVTKN
FT                 LPSFSIQSSKLLIPENLKLADPLFFKPGQIDALIGGEFFLQLLDHGRIELG
FT                 NGLPILQSTKFGWIIAGSVPSHLIVSRATDRPLPSNQGCLLIQQESIEDTI
FT                 KRFWELEEYRDNKKRLSREEESCENHFINTTSRDALSGRFVVRLPFRENKR
FT                 LLGRSRDIAVKRLEYLERKFQRNPEFRDRYAEFMREYVNLNHMSICETDNA
FT                 SNAVYLPHHGVVRESSLTTKLRVVFDASAKTTSGISLNDTLMVGATLQDSI
FT                 IDIVMRFRLPAVAITADLQKMYRQILLHSNDRDYQRILWRFSPSDPIGEYR
FT                 LNTVTYGQACAPFLAVRCVQQLARDEGAQFSNASGVLLNDLYIDDIITGVD
FT                 CENQAVELVAQLEALLNKGGFRPHKWRTNSEKLLRDLRANNRAEESSALAI
FT                 ESGTIKTLGLNWCPKADMFQFSMDFVKSPVSTKREVLSTISRLFDPLGMVG
FT                 PILTRAKLIMQETWVSDLDWDEPLTDNLRKAWDAYVEDVRGVGSIRVPRRV
FT                 IQCPNAMRFCLHAFCDASMKAYGACIYLQSSDGNGGSSSLLLCSKSRVAPV
FT                 KSKTITLPRLELCGAVVLVRLLQGVKRAIKIKLDEVHAWSDSTIALAWIAG
FT                 DPSRQKTFVSNRTAEIQSVLRPEYWHHVDGGENPADLISRGTDLTTLRQSK
FT                 IWWEGPNWLSRFADCKRREAQSLGLTKEDEEFIQSEQKSVNRVFVSTGDET
FT                 SVIDSLLRGHSSLSRVERVLAWIVRFGRNARLKHDERKFGHISTAEIRDAH
FT                 LLLIIAIQKTHFADATAKLVARKPITTSSNLLSLSPFVDERGVLRVGGRIQ
FT                 NSQLPFETKHPIVLPSNNKFTQMLFEREHRRLMHIGPQALLYSIREKYWPL
FT                 KGKNIARGIVHNCITCSRNKPRLLSQVMGQLPADRVTPKRPFFVIGVDFAG
FT                 PITTLLNRGRGRKTNKSYISLFVCFTTKAIHLEAVSDLSSASFVAALRRFA
FT                 GRRGYPQRIYCDNATNFVGAKGELTEMYQLVEKENREIMDEFCIPNNVDWN
FT                 FIPPSSPHMGGLWEAGVKSCKFHLKRVIGESLLTFEELSTALTQVEACLNS
FT                 RPICRMPSTAADLQPLTPGHFLIGGPLVALPDIDVTDVPINRLDRWQAVQR
FT                 IAQDFWKRWSREYLTSLQGKTKWTSERNNLLINDIVMIQDNNAPPLRWKLG
FT                 RVIETHKGTDNKVRVVTLKTANGTCKRSINKLCKLPVSDAAMHPCLS"
XX
SQ   Sequence 5845 BP; 1735 A; 1190 C; 1463 G; 1457 T; 0 other;
     taatggtcct tcgagccgga tagagtgcgc gattggaaag gcggtcgtga taaatcgcag        60
     gtacgaatat acgctggtca agcttacgaa actcataagc aactgtattc aacaatcatt       120
     aacgattttt tacgattatt cacgagtaaa atcagacaat taaccaatta tcaatttaca       180
     atttcgaatc gcgccgttgg ggtgttgtta tcggttgact tccgatcatc gtcgaatggc       240
     gtgatacgcg ttgagcggtc tgtccttggc tcccttgcgc tctcaatata agcaagagaa       300
     aaattaccga gtgaagcgag tgatacagta cagtcaactt caaacttcaa aatgagtatg       360
     gaaaaactcc ggaagcagcg aagtttgctg aagggaaaaa tgactaccat cagaaacttc       420
     atcatcaagg ccacgactga gacagcgccc gaggaggtca cagcacgtct tcaggctgtg       480
     gaagaaatat acacaagatt ccagggaata tcagagcaaa tcctgaccat tgacgaggcc       540
     gatcctgctg atcaggccga agacaatgaa ttcgatgaac gatattacag cactaaagca       600
     gccttagcac aattattgga caagctcaag ccacggtcgg gggaaccgtc ggtcagcggc       660
     acacgcggtt cagcaggcga tacaaaaata atgcaaatct tggaacaaca agcaaatcta       720
     atacaaaaat tagctgagcg taatgacaat gaaacgctgg cgcgcacact ggagcatcaa       780
     ggtcaattgc tggaaagagt gaacacgcag tcaagcacgt ccgtacgaga agctcatgta       840
     aaattaccaa caatgaaatt accaacattc gatggaaata tagaggagtg gaagagatac       900
     tccgacacat tcaagacact gattcatgac agcgagttat ccgacgtgca gaaacatcaa       960
     tatcttgtcg gatcattgag cggttcagcg gctaagatta ttgagtccat cgaaatctct      1020
     ggagacaatt atttcattgc ctgggaatta ttaagggaac gatacgacga caaaaagggt      1080
     atcaagaaac gacacatgca atgcttacta aacgagctac ctaaaataag gcaagaatcg      1140
     gcggacacga tacaggaatt ggtggatcac gtgcaaaaac atttgcgagt attgcaagca      1200
     atgaagcttc ccacagacca atggggagat ataataattt ttctcatcga gaagaacttg      1260
     gacagcacga ctagaagacg ctgggaagaa catattgagg ataaggaaaa cataacgaca      1320
     agtacaatga tggaatttct tcggcggcat agccagctgt tgcgacgggc ggctgatgat      1380
     agcgagactg gcacgtcaag aaacagtgtc ggcaaggaca attcggacaa acagcgaaca      1440
     acaagcacga aggtacgaaa caatgcggca ctggcaacaa caacgcggga aggaagatgt      1500
     tatctttgtc aaggacagca tctcatttac ggttgtgcgg gtttcttgaa tttgtctgtc      1560
     gaggatcgaa tcaaggaaat caagcggttg cgactttgtc tgaattgcct gcgaccggat      1620
     catttctcta gacattgcag gtccagttcc tgtagggaat gcggcgagcg gcacaatacg      1680
     ctatgtcaca taaagagacg accactcggt tcatcggcgg agttgacgag gagttcatca      1740
     gaggattcga gcgaggcatc cgttggtgcc acgctttgct cgatggcgag taccgagggc      1800
     aggttgagga cgatcgacct tagatcatct gaaggtgcat accatcagcg tgttaaggac      1860
     cagcgtaagc gtatcttaat ggcaacggcc atcgtgaatg ttgcaacggc gagcggcgat      1920
     cttaaattgc gagtactatt agatagcgcg agcgagctca attttgtcac gtctgcagca      1980
     tgcaggagat tgaatttgaa tttagataac attcaagaac atatcagtgg gctgagcgat      2040
     atgaaatgta cgataaatca cggttgtaga ctttcaatca attcgcgaat gtcaaatttc      2100
     aatttaaatt tatattgttt agtagttcct caagtgacta agaatctgcc gtcgttctca      2160
     atccaatcat caaagttatt aattcctgaa aatcttaaat tagctgatcc gttatttttc      2220
     aagccgggtc agatcgatgc acttattggt ggcgaattct ttttgcagtt gttagaccac      2280
     gggagaattg agctcggtaa cggtttgccg attttgcaga gcacaaagtt cggatggatt      2340
     atcgcgggct cagtaccatc acatttgatc gtcagtcgtg cgaccgatcg tccgttgccg      2400
     agcaatcaag ggtgtttatt aattcagcag gaatcgatcg aggatacgat aaaaagattt      2460
     tgggaattgg aagaataccg cgataacaag aagcgattat ctagggaaga agaaagctgt      2520
     gaaaatcatt tcataaacac aacaagtcga gacgcgttgt ccggacggtt tgtcgtgcga      2580
     ctgccctttc gtgaaaacaa gcgtctgttg ggtcgatcga gagacatcgc agtgaaacga      2640
     ttagagtatt tagaacgtaa atttcagaga aatccagaat ttcgcgatcg atatgccgag      2700
     tttatgcgcg aatacgttaa cttaaatcac atgtctattt gtgaaaccga caatgcttcg      2760
     aacgcagtat atttaccgca tcacggcgtg gtgcgcgagt caagtctaac aacaaaacta      2820
     cgagtggtat tcgacgcatc cgcaaaaacc acttccggta tttcgctaaa tgacacatta      2880
     atggtaggag caaccttaca ggatagcata atcgacattg ttatgcgttt tcgtctgccg      2940
     gccgtcgcaa ttaccgcaga tttacaaaaa atgtatcggc aaatattgtt acattcaaat      3000
     gatcgcgact atcaaagaat tttatggcgt ttttctccga gcgacccgat aggcgaatac      3060
     agactaaata cagttaccta tggtcaggca tgcgcgccat tcttggctgt tcgttgcgtg      3120
     cagcagttag cgagggacga aggtgctcaa ttcagcaatg catcaggagt attattgaat      3180
     gatctataca ttgatgatat cataacggga gtcgattgcg aaaatcaagc ggtagagcta      3240
     gttgcacagc ttgaggcatt gctgaataag ggaggattta ggcctcacaa atggcgtaca      3300
     aatagcgaaa aattactacg agacttgcga gcgaacaatc gagcggagga gtcgtcagcg      3360
     ctagcgatcg agtcgggcac tataaagacg ttaggattaa attggtgtcc gaaggcggac      3420
     atgtttcaat tttcaatgga ttttgtgaag agtcccgttt caactaagcg tgaggttctc      3480
     tcaacgattt caagattgtt tgatccgctt gggatggtcg gtcctatatt gactcgagca      3540
     aaactaatta tgcaggaaac gtgggtgtcg gatttggact gggacgaacc attgacagac      3600
     aatcttcgta aggcatggga tgcgtatgtg gaggatgtgc gtggggtcgg ttcgatccgc      3660
     gtaccgcgca gagtcattca atgccccaat gcgatgcgct tctgtttaca tgcattttgc      3720
     gacgcgtcaa tgaaagctta tggagcttgc atttacttgc agtcgagcga tggcaacggt      3780
     ggatcgagtt cccttttgtt atgttcaaaa tcgcgtgtgg caccggtcaa aagtaagacc      3840
     attacattac cgaggctcga attgtgtggc gctgttgtcc tggttagatt gcttcagggt      3900
     gtgaaacgag ccatcaagat caagctcgac gaagtgcatg catggagcga ctctacgata      3960
     gctcttgcgt ggatcgccgg cgatccgtcg cgtcaaaaaa cattcgtttc caatcgaaca      4020
     gccgaaatac agtcggttct tcggcccgag tattggcatc acgtcgacgg aggtgaaaat      4080
     cccgcggatc taatttcaag aggtactgac ttgacgactt taagacagag taaaatttgg      4140
     tgggagggtc cgaattggct gtcgcgtttt gcggattgta aacggcgaga agcacagtcg      4200
     ctaggtctta ccaaggagga tgaagaattt atccagtcgg aacagaagtc ggttaatcga      4260
     gttttcgtga gcaccggcga tgaaacttcc gtcatagatt ccttgctgag aggtcactct      4320
     tccttatcta gggtcgaacg agtcttggca tggatagtca gattcggacg caacgcgcga      4380
     ttgaagcatg atgaacgtaa gtttggacac atctccacag ccgagattcg tgacgcgcac      4440
     ctgttgttaa ttatagcgat acaaaaaact cattttgccg acgcgacggc taaattagta      4500
     gcgagaaagc caattacaac tagtagcaat ttactatcgc ttagtccctt tgtggatgaa      4560
     aggggagtcc tcagggtggg cggtaggatt cagaattcac agttaccatt tgaaactaaa      4620
     catccaattg ttttaccgtc gaataataaa tttacgcaaa tgttatttga gagagaacac      4680
     cgaagattga tgcatatagg tccacaagca ttgttatatt cgattcgaga gaagtattgg      4740
     ccactcaagg gaaaaaacat cgcaaggggg attgtgcata attgcataac ttgctcccgc      4800
     aataaaccaa ggctgttatc gcaagttatg ggacaattgc ccgcggaccg agtaacgcca      4860
     aaacgaccgt tttttgtaat cggagtagat tttgccgggc ctattacaac gctactcaat      4920
     cgcggccgtg gaagaaaaac gaacaaatct tatatctcac tatttgtatg ctttacaacc      4980
     aaagcaatac atctcgaggc ggtcagcgat cttagttcgg cgtcctttgt agccgctttg      5040
     agacgtttcg ccggacgtcg gggttaccct cagcggatct attgtgataa cgcaacaaat      5100
     ttcgtcgggg cgaaaggcga gcttaccgag atgtatcagt tagtcgaaaa ggaaaatcgt      5160
     gaaataatgg atgaattttg cattccgaat aatgtggatt ggaattttat tcctccgtca      5220
     tctcctcaca tgggaggact atgggaggcc ggcgtgaagt cgtgcaaatt tcacttaaag      5280
     cgtgtcatcg gagaaagttt attaacgttc gaggagttaa gtacagcatt aacacaggtt      5340
     gaggcatgtt tgaattcgcg tccgatttgc cggatgccat cgacagccgc ggatcttcaa      5400
     cctcttacac caggacattt tttgataggt ggtccgctgg ttgctcttcc ggacatcgac      5460
     gtgaccgatg tgccaattaa ccgactcgat cgctggcagg cggttcagag aattgcgcaa      5520
     gatttttgga aacggtggag tagagagtat ttaacctctc tgcagggtaa gactaaatgg      5580
     actagcgagc gaaataattt gttaatcaat gatattgtta tgattcaaga taacaacgcg      5640
     ccaccattaa gatggaaatt aggaagggtt atagaaaccc ataagggaac tgacaataaa      5700
     gtgcgtgtcg taactctgaa aacagcaaat ggaacctgta agcgatccat caacaaattg      5760
     tgtaaacttc ctgtatccga cgcggcaatg catccatgcc tatcataaaa ttgtaaggat      5820
     taattgtcat taatggtggg cggga                                            5845
//
ID   BEL-6_MoPha-LTR repbase;    DNA;    INV; 383 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-383
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1152-1152 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 383 BP; 127 A; 68 C; 80 G; 108 T; 0 other;
     tgttgagatt taacttgtga ctgcgaacat gaagtcacgc tttgcatgcg tgaaagcggc        60
     tcgctgtttc cttgcaggga ggggagaatt tgagaaggaa gaatttaccg gtccctgagt       120
     aaaatcagta tagaacaatt tgtcgagaac aacgttagcc tagctgagcc gctactgaac       180
     aaattaattt aagttattaa gttgtgagac gggaaaaacc cagtattaat aatataagtt       240
     tatagtaata attatagtgt cattaacaaa ttttatgtaa cttgaccagc ttcgcgtgga       300
     gcttcagatc gctactcgca gcgctctgaa taatgtacac ctaaataaac cagcacaatt       360
     atctacaaag ttaacgtcta aca                                               383
//
ID   BEL-6_SI-I  repbase;    DNA;    INV; 5681 BP.
XX
AC   AEAQ01022971;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SI_;
KW   BEL-6_SI-LTR; BEL-6_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5681
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022971; Positions     404    6084.
XX
CC   Positions [4670-5248] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..5614
FT                 /product="BEL-6_SI-I_1p"
FT                 /translation="MSMTNSIDRQYELFGVIARAVENLHKLGPAKTTRGAV
FT                 QSRLAILKSNWDKFQAQHDSLYNQRSPETLQLAYFADDLHGQCEEQFADAQ
FT                 GTMLNILESFESPTPQCSHAPRASGTPQSTSSGSTWNPSSASHSRRLPRID
FT                 LPNFNGDYSQWHHFKDLFASMINANAELSAVEKLHYLKMSLSDEPATLLKS
FT                 IEISSNGFTRAWDTLIARYDNKRILIEAQLSALFSIRKAKSECSSEVKRLL
FT                 CELKEAIGALATLGCPVQHWDLILIFMTVRQLDVESVKEWEKSLGASSEAP
FT                 SFADFEKFLLGRILTLEAFERTTTSRKPQQANSSRSFGNARIHTAAVSEQK
FT                 CALCSSSHYISSCPKYLGKTLDQRREVVISKNLCFNCLGPHQLKACRSAKR
FT                 CRFCRKPHHSTLHLPAGDSTIASNASSGSSPSTSASTSSPPATHTASIHQH
FT                 ESAAPQDNLEHTFGSVTSNHLSQSRIIHRTPALLATALVDVVSSSGDLYEV
FT                 RALLDQGSEVSFISESVAQLLKLSRRAAAIPIIGIGAQRSSVSNGAVSLKV
FT                 ISQVNKAISLETDALVLPRLTAYLPPARVEFTQWPHIQGLKLADPSFATPG
FT                 KIDLILGANVYAQILEDGIRRGKIGEPIAQKTSLGWVLSGPLSNDTREINA
FT                 SDETSIIGLQCSLDHELLELLQRFWKQEDLAPSSQISMSPEESQCEEHFKT
FT                 THTRDVNGRFVVRLPFKKSVSEFGDSRSIALKMLHRMEKRFEANPSLKIQY
FT                 TDFLREYRVLDHMRSVAASERAPAREFFLPHHGVTRETSTTTKLRVVFNGS
FT                 QKTNLGISLNECLHIGPKLQTDLADILLRWRRHRYVFATDIEKMYRQIRVH
FT                 ENDWPLQKILWRNSPDERPQEYALCTVTYGLASAPYLALRCLQQLALESAP
FT                 THALAAEVLRRDTYVDDVLSGDESIPRAKRKISQLNDVLTAGGFTLKKWIA
FT                 NDLNLLDEIPTCDRESSPTVSVSDNTMHHTLGVRWERQSDNFIFSAPSLAT
FT                 SNNRVTKRSVLSLIARMFDPLGWIAPIIVTAKIFMQDLWAIRLDWDDELPE
FT                 DLKSRWTNYVTLLNGVSHISIPRWFGISSSNLAVEVHGFADASQSALAAVV
FT                 YLRVLNDNENAQVKMICAKTKVAPLKRLTIPRLELSAAALLVRQVKKIREV
FT                 LDLNQAPIHLWTDSTVALTWIKGHPSRWKDFVRNRVSFIQELSNSRWHHVA
FT                 GKENPADLASRGVNPQRLQLEELWWTGPHWLRTRSISWTASTPIHESTDDL
FT                 EERAPRCTTAFKDREQNLWMLDQYSSLRTLLRITAWVQRALKRFRKDVTSP
FT                 SSHEPLTVEEIESSLKWWVKCTQQAYFSAEIKSLKSQNPLPISNDLRRLTP
FT                 FLDTDGLLRLRGRLLRALLDPAEKHPLILPRECRLTTLVIHHHHRKTLHGG
FT                 PQLTLSSIRQKFWIIGGRIPIRAFIHKCVICARHRATTGQQAVGQLPASRV
FT                 IPGRPFLHIGVDYAGPVTLKTVRGRGSKAYKGYFIIFVCFSTSAIHLEVAT
FT                 DYSTEGFLAAFKRFTGRRGICSTITSDCGTNLIGADAELKRLFTASSREWT
FT                 HLANVLTSDGVTWKFNPPSAPHFGGKWEAGVKSVKFHLRRVIGDATLTYEE
FT                 LSTLLVQIEAILNSRPLIALSDDPSDLTALTPGHFIIGSALSTVPEPSLQE
FT                 VSRNRLSRWQLLQTMKESFWQRWSSEYLQQLQTPSKRHRPQDAFQKGSLVL
FT                 IKDERFPPSKWPLARITHVHPGVDGLIRVVTVRTATSTFKRPIVKLCLLPV
FT                 ENKESVQEP"
XX
SQ   Sequence 5681 BP; 1403 A; 1639 C; 1277 G; 1362 T; 0 other;
     ttttttggtc cttcgagccg gatcgcggat cgcggttttc gtgtcgcgct ctctctttac        60
     cggaatcctc ggaattaacg tagttctcga agagtgattt gtcgtgcctc tcgatctctc       120
     ggtctctcaa ggcgactcac atctagttat accgcgtggc ctaaaagtgc cgaatattca       180
     tcaacgcgga caaggtgact tctcgctgcc gatcaaggtg aaactgtcaa cgagtgcagt       240
     gaatcaagag ctcttataat cgaaaccctg caagatgtct atgacgaaca gcatcgatcg       300
     ccagtatgag ctgttcggcg ttatcgcgcg tgctgtcgag aacctccaca aactcggccc       360
     ggcaaaaacc acccgtggtg ctgtgcaaag tcgcctcgcg atcctgaaat cgaattggga       420
     caaattccaa gcccaacatg acagtttata caatcagcga tcgccagaaa ccttacagct       480
     agcctacttt gccgacgatc ttcacgggca gtgtgaagaa caatttgctg acgcccaggg       540
     caccatgctc aatatcctcg agagttttga gtccccaacc ccgcagtgct cacatgcccc       600
     ccgcgcgagt ggaaccccgc agagcacatc atctggaagc acttggaacc cgtcttccgc       660
     atcgcattct cgacgcttgc cccgcatcga tttaccgaat ttcaacggtg attactcgca       720
     atggcatcat ttcaaggacc tcttcgcatc gatgatcaac gcgaatgccg agctatcagc       780
     cgtcgagaaa ctccattatc ttaagatgag cctgtctgat gagccggcta cgctcttaaa       840
     aagtatcgaa atctcaagca atggattcac tcgggcatgg gacacactca tcgctcgcta       900
     cgataataag cgtatcctca tagaagccca gctctccgcg ctattctcaa ttcgcaaggc       960
     caagtccgaa tgctcgtccg aggtaaagcg actcctctgc gagctgaagg aagcaattgg      1020
     agccctcgct acgttaggtt gtccagtgca acactgggat cttatcctca ttttcatgac      1080
     agttcgtcaa ttagatgttg aatctgttaa agaatgggag aaatcgctcg gagcttcatc      1140
     tgaagcccca tcgtttgccg acttcgagaa attccttctc ggtcgcattc tcactctcga      1200
     agccttcgag cgaacgacga cctctcgaaa gccgcaacaa gcgaattcgt cacgatcttt      1260
     tggtaacgcg cgaatacata ccgctgcagt gagtgaacaa aaatgcgcgc tgtgctcatc      1320
     aagccattat atctcatcat gccccaaata cctcgggaaa acgctcgacc agcgaaggga      1380
     agtggtcata tcgaagaatc tgtgcttcaa ttgtctcgga cctcatcaac tgaaggcatg      1440
     ccgctccgcg aagcgatgcc gcttctgccg taagccacat cactccacgt tacacttgcc      1500
     agctggtgac tcaactatcg cctcaaatgc ctcgtctggc tcgtcgccgt caacttcagc      1560
     gtcgacctca tctccaccag ctactcatac cgcaagtatt catcagcacg aatccgccgc      1620
     tcctcaagat aatcttgagc acacgttcgg ctccgtgaca tcaaatcacc tttctcaatc      1680
     gcggattatt catcgcactc cagccttgtt ggctactgct ctcgtagatg tcgtttcatc      1740
     cagcggagat ctctacgaag tgcgagctct tctcgatcaa ggctcggaag tctcgtttat      1800
     ctcagaatcg gtcgcgcagc tgctcaaact ctcgcgccgt gctgcggcga tcccaattat      1860
     cggaatcggt gctcaacgct caagtgtctc aaacggagca gtttctctca aagtaatctc      1920
     gcaagtaaac aaagctatct ctctcgaaac cgacgctctc gtattgccgc gattgactgc      1980
     ttacttgccc cccgcgcgag tggaattcac tcagtggccg catattcagg gactcaaact      2040
     cgcggatcca agctttgcca cgcccggaaa gattgatctc attctcggtg ctaatgtgta      2100
     cgctcaaatt ctcgaagacg gcattcgtcg aggaaagatc ggtgaaccca tcgctcaaaa      2160
     gacatctctt ggatgggtgc tatctggacc tctctctaac gacactcggg agatcaacgc      2220
     ctcagacgaa acttccatta ttggtcttca gtgctctctc gatcatgagc tcctcgagct      2280
     ccttcaacgc ttctggaaac aagaagacct cgcgccatca tcgcagatat ctatgtcacc      2340
     agaagaatct cagtgcgaag agcatttcaa gactactcat actcgcgacg tcaacggtcg      2400
     attcgttgta cgcctgccgt tcaagaaaag tgttagtgag ttcggtgact cgcgctctat      2460
     cgcactcaag atgctgcatc gaatggaaaa gcgattcgaa gcgaatccct ctctcaaaat      2520
     tcaatatacc gacttcctgc gtgagtatcg tgttctcgat cacatgcgct ccgtcgccgc      2580
     gtcagagcgc gctccggctc gcgagttttt tctcccacat cacggagtta cgcgtgaaac      2640
     cagcacgacc actaaacttc gcgtcgtatt caacggatcg cagaaaacga atctcggaat      2700
     ttcgctaaat gagtgtctcc atatcggacc gaaattgcag acggatctcg cggatatctt      2760
     actccggtgg cgccggcatc gatacgtatt cgcgaccgat atcgagaaga tgtatcggca      2820
     aattcgcgtg cacgagaacg attggccgct tcagaaaatt ctctggcgaa actctcccga      2880
     tgaaaggcct caagagtatg cattgtgtac agtcacatac ggcctcgcga gtgctccgta      2940
     tctcgcgcta cgttgcctgc agcaactcgc tctagaatcc gcgccaactc acgcgctcgc      3000
     tgccgaagtt cttcgtcgcg acacatatgt cgacgatgtt ctctccggcg acgaaagcat      3060
     ccctcgagcg aaaaggaaaa tctcgcagct gaacgacgtt ctcacggcgg gcggatttac      3120
     tctcaaaaag tggatcgcta acgacttaaa tctcctcgac gaaattccaa cttgtgatcg      3180
     cgaatcatcg cctacggtat cagttagcga caatacaatg catcatactc tcggcgtgcg      3240
     gtgggaacgt caatcggaca attttatatt ctcggccccg tcgctcgcaa cctcgaataa      3300
     ccgcgttaca aagcgctcgg tattgtcgct catcgcgcgc atgtttgacc ctctcggatg      3360
     gatcgcgccg ataatcgtta ccgctaagat tttcatgcaa gatctgtggg ccatccgcct      3420
     cgactgggac gacgaactcc cagaagatct gaaatctcgc tggactaact acgtcacgct      3480
     actcaatggc gtctctcata tttcaatccc tcgttggttc gggatcagtt catcgaatct      3540
     cgccgtggaa gtgcacggct tcgcggatgc gtcgcagagt gctctcgccg ccgttgttta      3600
     tctccgcgtt ctcaatgaca atgagaacgc tcaagtgaaa atgatttgtg cgaagacaaa      3660
     ggtggcccct ctcaaacgtt tgactatacc gcgacttgaa ctctcggcgg ctgcgctact      3720
     cgtgcgtcaa gtgaagaaaa ttcgcgaagt gctcgacttg aatcaagctc caattcatct      3780
     ctggaccgat tcaacggtcg cactcacgtg gatcaaaggt catccatcgc gttggaaaga      3840
     cttcgtccgg aatcgcgtct cgtttataca agagctctca aactccaggt ggcatcacgt      3900
     cgccgggaaa gaaaacccag cagacctcgc atcacgcgga gtaaatcctc aacgtctcca      3960
     actagaagaa ttgtggtgga ccggccctca ttggttacgt acgcgctcta tatcgtggac      4020
     ggcttccacg cctattcacg aatctacaga tgatctcgaa gaacgagccc cgcggtgcac      4080
     aacggcattc aaagatcgcg agcaaaatct ctggatgctc gatcaatact cgtcgctaag      4140
     gactctgctg agaataactg cttgggttca gcgtgctctt aaacgctttc ggaaggatgt      4200
     aacatcaccg tcgtctcacg agcctctcac agtggaagag atagaatcct cactcaaatg      4260
     gtgggtcaaa tgcacgcagc aggcctactt ctcagctgaa attaaaagct tgaagagcca      4320
     gaatccacta ccaatttcaa acgatctacg ccgtctaact ccgtttctcg acaccgacgg      4380
     gctcctacga ctacgcggac gtctactacg cgctttactc gatcccgcgg aaaaacatcc      4440
     cctcatcttg cctcgagaat gtcgattgac gacactcgtg attcatcatc accatcgaaa      4500
     aactctccat ggcgggccgc aactcactct atcatcgatt cgccaaaaat tttggattat      4560
     cggaggtcgc attcccatca gagcattcat ccacaagtgt gtcatctgtg ctcgtcatcg      4620
     ggctaccact ggtcaacagg cggtcggaca acttccagca tcccgtgtaa ttccgggccg      4680
     cccattctta cacattggag tcgactatgc cggaccagtg actctcaaaa ccgttcgagg      4740
     acgaggctcc aaagcttaca aaggatactt catcattttc gtctgcttta gcacttccgc      4800
     aatacattta gaagtcgcta ctgattactc tacggaagga tttctcgcgg cattcaaacg      4860
     attcacggga cgacgaggca tctgttccac catcacgagc gactgcggca ccaatctgat      4920
     cggtgccgac gcagagctca agcgactgtt caccgcctcc tcccgagaat ggactcacct      4980
     agccaatgtc ctcacaagtg acggagtaac atggaaattt aatccacctt ccgcccccca      5040
     ctttggtgga aaatgggaag ccggcgtgaa atctgttaaa tttcacttgc ggcgagttat      5100
     cggtgacgct actctcactt atgaggaatt atcaactcta ctagtacaaa tcgaagccat      5160
     cttaaattcc cgcccactaa tcgctctctc ggatgatccg tcagatctca ccgctctaac      5220
     gccaggtcat tttatcatcg gatcggctct ctccaccgtg ccggagccct cgctccaaga      5280
     agtatcgaga aatcggttgt cgcgttggca acttctacaa acgatgaagg aatcattctg      5340
     gcaaagatgg tcatcggaat acttgcagca attacagact ccctcgaaac gtcatcggcc      5400
     tcaagatgcc ttccaaaagg gctctctcgt tctaatcaag gatgaacgtt tccctccatc      5460
     gaagtggccc ctcgcgcgca ttactcatgt gcaccctgga gtcgacggtc ttattcgcgt      5520
     cgtcaccgta aggacagcta cctcgacgtt taaacgaccc atagtgaagc tgtgtttatt      5580
     gccagttgaa aacaaagagt ccgtacaaga accctaattt caccgttcgc actctcgttt      5640
     caattttttt cgtctactac gggtagacaa ggcgggcgga a                          5681
//
ID   BEL-6_SI-LTR repbase;    DNA;    INV; 401 BP.
XX
AC   AEAQ01022971;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SI_;
KW   BEL-6_SI-I; BEL-6_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-401
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022971; Positions       3     403.
XX
SQ   Sequence 401 BP; 93 A; 119 C; 53 G; 136 T; 0 other;
     tgttctgata aaacctagca gttactgtta tattctgtta cattattctg tatctcgaag        60
     tttctctttt cccatctgtt ttgcacatgt ctatctatac ctgatctcca tctgtttatc       120
     attcctcaat ctttattcca ctcgtcctta tcgtccttcc ctcgtaaata ttatcttacc       180
     tctccttgtc tccaacacta taacaatgtg ccccctctcc ataactcctg actgaatcct       240
     gttctgcggc ccgaacgggc agtcgttctc tgactctgga gcaaaataaa tcgagattca       300
     taacgtactc tccgcgcata ttacttttcc ttccccgaaa gattccgatg tcgccagcga       360
     atcgccgcgc tcgtcgattc acataacaac ttcacaaaac a                           401
//
ID   BEL-6_SiCu-I repbase;    DNA;    INV; 5532 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5532
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4981-4981 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..5241
FT                 /product="BEL-6_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAALAKAETDRNMLKFSISQDERKVSSHTTTALTISA
FT                 VDMLLKKFEKYTQELLEIHSRISAQGPADMGPHEKEYQLLDDRIFGASTKL
FT                 MDIRKTFTSTAATPTITAANVKLPELQLPSFDGRYEDWPSFEDLFTATVDN
FT                 NKSLSRAQKLQYLKACVKGEAATLIKSFVITDQNYTEAWNLLSTRYNNKAD
FT                 IVYALAKKIYHHPSLKTESVSGLQGLLNSVTECVRSLRVLGQPTDKWDTLL
FT                 VVMMIEKLDPETKSEWAMSRKSTTPATFQEVTDFLEVYVRGLIAKGAVSSK
FT                 PQSSSKGNSSASHQGFNNARTFHVSAAPSTCIMCKGSHPIIQCGKFLRLDA
FT                 ADRMSAAKQMLACLNCLRKGHRTRDCYQNSNCKKCAGWHHTLLHTDHHKLS
FT                 FNSETAGAQGTSSSEAPKGSKEVVRTHFSSAPEESTQRMFKTAVVDIEDSS
FT                 GVRRPCRVLFDDCSEAEYITERCASALGLPRAKADIIVEGVAGVTAAHCKS
FT                 KVSARLSSRVTSESVCVENLFVIPRITGYVPRFSCDSKQWSHLSGLQLADP
FT                 TFDKPGEIDILIGTGVVSYIMKDGMKKGKENQPVAYNSIFGWVLSGVMKAT
FT                 RIVRTHHATCKLEGLVQRFWEIEEVPGPKVFTPLEAKAEEHFVNTHSRKAN
FT                 GRYVVRLPFNEKLDSIGESRELALQRLLQLERRFRKNPTYQQQYIEFMKEY
FT                 LDLGHMEPVTDTTTRKYYIPHHFVRKEDSSTTKLRVVFDASMKSSSGVSLN
FT                 DALLVGPTIQDELFVQLIRFRSHRVALKADIAKMYRQFEVHEMDRDFQTIL
FT                 WRESSDQPVKEYRLKTVTYGTSCAPFLATRCLQQLAIDEQCNFPDASRAMQ
FT                 KMMYVDDFLGGQESASESVDLFNEMNKLCAAGQLDIRKWCSSEREVLRIIP
FT                 KDMQEKEMSQDFVEDNTVKALGIRWNPSEDSFFFHVEKKEPKQRVTKREVL
FT                 SEIAKTFDPIGWITPTTVIAKMLFQDLWKETQDWDQQVSEEIRDRWNTYCS
FT                 QLVEIKKIRIPRCLIPGPTVNYQLHCYSDSSEKAMACCLYLRCVSESGEIT
FT                 SNLITSKSKIAPIKQISIPRLELNAAVLLAETVEAVVKCFNFQFTMYAWTD
FT                 SMISLCWITSSSRRWKSYVATRVAAITDIIPARCWHHVRSADNPADLPSRG
FT                 ILPEDLRDNSLWWNGPSWLSTNEFPVGPGIHADEDEVTKEERKNVATMLIA
FT                 EQSDPMDAMFNHSSLSAVVSTIGWLSRFCEYNKNKRTCSKGPLSPAERRKS
FT                 LSLIIKYVQRKKFKDEFRQLSRQEALSSNSKLQKFNVFLDGDSIIRVGGRI
FT                 QNAELSFNRKHPIVLPHDHHLTTLVIRQQHADTLHGGFTLTLSMLRRIYCI
FT                 IRGRDAVRHELRKCVTCRRVKATTAQQMMGNLPSARVTAHRPFLHCGVDFA
FT                 GSFQVKMRKGRGSALDKCYMAVFVCFSTKAVHLEVVTSLSTPDFLAAFRRF
FT                 SARRGIPSHMYSDCGTNFIGADKELKKMFNASAPDIQQHLSSQGITWIFNP
FT                 PAAPHQGGLWEAAVKSAKYHMKRIIGNQVLSLEQFQTLLCNVEACLNSRPL
FT                 CALSADPMDIDALTPGHFLVGQPLLAVPEGDVTSIPENRLDHWQRVQQMTQ
FT                 HFWRRWREEYLVTLQQRQKWNAKQRNVEVGDLVVVREDNLPPAKWKLGRVI
FT                 ATHPGSDKLVRKATVKTSSGEFTRPIIKLAVLLPNNEC"
XX
SQ   Sequence 5532 BP; 1635 A; 1223 C; 1324 G; 1348 T; 2 other;
     tttttgatcc ttcgtcagcc agatcttctg aacaaggaga ggatttgaaa cagtgaccag        60
     tggataaaca gctccagtaa aacagttagt gttttgttag ttttgtgttt tgtgatcatt       120
     atggctgcat tagccaaagc tgagactgac cggaatatgc ttaagtttag catctcccaa       180
     gatgagagga aggtgtccag tcatacaact acagctttaa ccatctcagc agttgacatg       240
     ctcctcaaga agttcgagaa atatactcaa gaacttcttg agatccattc caggatatca       300
     gcgcaaggtc cagcagatat ggggccacat gagaaagagt atcagctctt ggacgacagg       360
     atatttggag cttcaacaaa gctgatggac atcaggaaga ckttcacctc aacagcagca       420
     actccaacaa ttacagcagc aaatgtgaag ctaccagaac ttcagcttcc ttcattcgac       480
     ggcagatatg aggattggcc atcgtttgaa gacctgttca cagctacggt ggacaacaat       540
     aaaagtcttt cacgagccca aaagctacag tacttgaagg cttgtgtgaa aggtgaagct       600
     gcaactctaa ttaaatcgtt cgtgatcacc gaccagaact acacagaagc ttggaatttg       660
     ctttctactc gctacaacaa taaggcagac atagtttatg ctctcgccaa gaaaatctac       720
     catcacccca gtttaaagac tgaatcagtc agtggccttc aagggctatt aaattctgtg       780
     accgagtgtg tgcgttccct gagggttttg ggccaaccca cagataaatg ggatacatta       840
     ctcgtcgtca tgatgatcga gaagctcgat ccagaaacca agtcggaatg ggcaatgtcc       900
     agaaaatcca caacaccagc aacctttcaa gaggtgacag actttttaga agtctatgtt       960
     agaggactca tcgccaaagg agcagtatcc tctaaacccc agagcagttc caagggtaac      1020
     tcatcagcga gccaccaggg cttcaacaat gccaggacat tccatgtttc agcagcgcct      1080
     tccacatgca tcatgtgcaa aggctctcat cccataatcc agtgtggcaa gttcctgcgt      1140
     cttgacgcag cagataggat gtcagcagca aagcaaatgc tggcgtgcct caattgtctt      1200
     cggaagggac accggacccg ggattgctac caaaatagta actgcaagaa gtgtgcgggt      1260
     tggcatcaca cacttcttca cactgaccat cacaaattaa gtttcaacag tgaaacagca      1320
     ggtgctcaag gcacatcaag ttcagaggct ccaaagggat ccaaagaggt ggtaaggacc      1380
     cacttcagct cagctccaga agaatccacg caacggatgt tcaagacagc agtggtggat      1440
     atagaggact catcaggagt tcgtcgcccg tgcagggtat tatttgatga ctgcagtgaa      1500
     gcggagtaca tcacagagag atgtgccagc gcactgggct tacctagagc caaagcggat      1560
     atcatcgtgg aaggtgttgc tggtgtgaca gcagcacact gcaaatcgaa ggtttcagcc      1620
     agactttctt ctcgcgtcac tagtgaaagt gtttgtgttg agaatctgtt cgtgatccca      1680
     cgcattacgg gatacgtacc cagattctca tgcgactcca aacagtggag tcatctcagc      1740
     ggtctgcagc tggcagatcc aaccttcgac aagccaggag aaatcgatat tctcatcggc      1800
     actggagtgg tgtcctacat catgaaggat ggcatgaaga aaggcaagga aaaccaacca      1860
     gtcgcctaca acagtatctt tggatgggtg ctctccggag tgatgaaggc aacacgaatt      1920
     gttcgcacac atcatgcaac atgcaagtta gaaggcttgg tgcagcggtt ttgggagatt      1980
     gaagaagtcc cgggcccaaa ggttttcact ccacttgaag caaaggcaga ggagcacttc      2040
     gtcaacactc acagtagaaa ggctaatgga agatatgttg tcagattacc tttcaatgag      2100
     aaattggatt caattgggga atcaagagaa ttggcacttc agcgacttct tcaactggaa      2160
     agaagattta ggaagaatcc tacctaccaa cagcaataca tcgagttcat gaaagaatat      2220
     ctggatttgg gtcacatgga acctgtgact gacacaacaa caaggaagta ctacatccct      2280
     catcacttcg ttcggaaaga agacagcagc actaccaaac tacgtgtggt tttcgacgct      2340
     tcaatgaaga gttccagtgg tgtttcattg aatgatgcac tgttggttgg acctaccatt      2400
     caggatgagc tcttcgttca actcattcgc tttagatcgc atcgtgttgc gttgaaagcg      2460
     gatatcgcaa agatgtatag gcagtttgaa gttcacgaaa tggatcgcga cttccagaca      2520
     atcttgtgga gggaaagtag tgatcagcct gtcaaggagt atcgcctgaa aaccgtcacc      2580
     tacggcacat catgtgctcc attcctggcc acaagatgtc tgcagcagct agctatagat      2640
     gagcaatgca actttcccga cgcatcccgg gccatgcaga aaatgatgta tgttgatgat      2700
     tttttgggag gacaggaaag tgcgagtgaa agcgtcgact tgttcaacga aatgaacaaa      2760
     ctttgtgccg ctggacagtt ggacatcagg aagtggtgca gcagtgaaag ggaagtgcta      2820
     cgtattattc caaaagacat gcaagagaaa gaaatgagtc aggatttcgt tgaagataat      2880
     acggtcaagg cgctagggat acgttggaat ccaagtgaag acagcttctt cttccacgtt      2940
     gagaaaaagg aacccaaaca gagagtcacg aaacgagagg tcttatcaga gatcgctaag      3000
     acgtttgatc caattggatg gatcactcct acaactgtaa ttgcaaagat gcttttccaa      3060
     gatctatgga aagagactca ggattgggat cagcaagtta gtgaggagat cagagacaga      3120
     tggaatacgt attgcagtca gttagttgaa ataaagaaga taaggattcc aaggtgccta      3180
     atcccgggcc caacggtaaa ttatcaactt cattgctaca gtgattcaag tgaaaaagca      3240
     atggcttgtt gcctgtacct acgttgtgtc agtgaatctg gagaaattac cagcaatctc      3300
     atcacatcaa aatccaagat tgccccaatc aagcagatct ccattcccag actagaactg      3360
     aacgcagcag ttctcttggc agaaaccgtt gaggcagtag tgaagtgctt caattttcaa      3420
     tttaccatgt acgcatggac agactctatg atcagcttgt gttggatcac ttcatcttct      3480
     cgtcgatgga aaagttatgt ggctacaagg gtggctgcaa tcacagacat tatccctgct      3540
     cgatgttggc atcatgttcg tagcgccgat aatccagcgg atcttccctc ccgtggcatc      3600
     ttacctgaag atctacgcga caacagttta tggtggaacg ggccaagctg gctctcaaca      3660
     aacgaatttc cagttgggcc cgggattcac gccgatgaag atgaagttac caaagaagag      3720
     cgaaagaacg ttgcaacaat gctgattgca gaacagtccg atcccatgga tgctatgttc      3780
     aaccattcat cattatcagc agttgtgtca acaataggtt ggctatcacg attttgtgaa      3840
     tacaacaaaa acaagcggac atgtagcaaa ggtccacttt ccccagcaga aagaaggaaa      3900
     tcactttcac tcatcataaa atacgttcaa cggaagaaat tcaaagatga attcagacag      3960
     ctcagtcgcc aggaggcact gagctctaac agcaaacttc aaaaattcaa tgtgttcctg      4020
     gacggtgaca gcatcattcg cgttggtgga cgcattcaaa acgcagagtt aagcttcaac      4080
     aggaagcatc ctattgtgct gcctcatgac catcatttga caactttagt catacgacag      4140
     cagcacgcag atactctgca cggtggattc actctgacct tatcaatgct acggagaatt      4200
     tattgcatca tacgtggaag agacgctgtt aggcacgagt taagaaagtg tgttacgtgt      4260
     agaagagtga aagctacaac tgcacagcaa atgatgggaa atcttccttc ggcacgagtc      4320
     acagcacatc gtccgttcct tcactgcggt gttgactttg ctggcagctt ccaagtaaaa      4380
     atgagaaagg gaagaggcag cgcattggac aagtgctaca tggcggtgtt tgtgtgcttc      4440
     agcaccaagg cggtgcattt ggaggtggtg acgagtctat caacgccaga ctttctagct      4500
     gcgtttagga ggttctctgc acggcgggga atacccagtc acatgtacag tgactgcggc      4560
     accaatttta ttggagcgga caaggagctc aagaagatgt tcaacgccag cgctccagat      4620
     attcaacagc atttgtcaag ccaaggaatt acgtggatat ttaatccacc agcagcacca      4680
     catcaaggtg gtttatggga agcagcagta aagtcagcaa aatatcacat gaagcggatc      4740
     atcggaaacc aagttctgag tctcgagcag ttccagacat tgttgtgcaa tgtggaggca      4800
     tgtctcaaca gccgtccact ctgtgctctc tctgcagacc ctatggacat cgacgctctc      4860
     actccgggtc attttctggt aggccagcca ctactagcag ttccagaagg tgatgtcact      4920
     tctattccag agaatcggct tgaccactgg cagagagttc agcagatgac tcagcatttc      4980
     tggcggagat ggagagagga gtacctggta actttgcagc agaggcagaa gtggaatgca      5040
     aagcagcgga atgtggaggt tggtgacctt gtcgttgtac gggaggacaa cttgccccca      5100
     gccaagtgga agttaggtcg agtaattgca acgcatcccg ggtctgacaa attagtgagg      5160
     aaggccacag tgaagacatc aagtggagag tttactagac caatcattaa attagcagtt      5220
     ctcttaccaa acaatgaatg ttgatggaat gaattacktt acgctttttt taattcatga      5280
     tattttttat ctttttaaca gcttcaacac actgagagac ttcaagatcc tggtcaactt      5340
     gcacctcgct tatgcgtccc aactcccttg ataactgccc acgcaaggac cgcatcagga      5400
     cttgaggaaa ctcagtgatt tggagcgtat taagatactt gagtatttca ttttttattc      5460
     tttgacaata ttccatcaat tgagattgtt cttttcatct taatttttgt atggtcatac      5520
     aaaggcgggg aa                                                          5532
//
ID   BEL-6_SiCu-LTR repbase;    DNA;    INV; 761 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-761
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4965-4965 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 761 BP; 210 A; 163 C; 126 G; 255 T; 7 other;
     tgtacaaaac cgtcgtttga tattgtaacg tagaagttca ttggtcttac aataatgttc        60
     acgtgcaact catgagkaat aatgtttcaa gtcttcgatc tattgtatgt aaaattagcc       120
     ttcttgaatc aatgtgtgat aagctacgat taatgtattg tgacttatgt atttagtatt       180
     gacagccsaa aatgctttac ctttctattc ggttaagwgt ttatgctcat ttacataatt       240
     ggkctttatg ataatcgcta cagaacmttc tcgatgttct tattaccggt caatgctacg       300
     ctmaacttca cggtgacttt caatgtgaac ctttacgtga acttttctct gattggacat       360
     cagcgtcctt tcaacttcaa tattagtcgg tgtagcgtta gactcggtgc ccattctaag       420
     agacacgttt agcgagtcaa catcaagcta gcgagtagaa gcaattccgt tttatatact       480
     tacatttctt cgcgtcttaa gttacccctg acattaaact caagtaataa gtcaatctta       540
     ctcactcatt gccttgtttt mtagcattga gccatttatt ctacgtttcc atcaattcat       600
     aatcccgggc ccaagcaatt aactacaatc aagcataata gaatcccggg cccacataat       660
     tcatgacata tcgagtcgta ggcgttacct acgtggtcct tctatttttc gggtaactca       720
     cggcagcacc tttcaaatcc tacgactaag ctaatcgcac a                           761
//
ID   BEL-6_SpEx-I repbase;    DNA;    INV; 5796 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5796
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6888-6888 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           590..5764
FT                 /product="BEL-6_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MADAKLRDLVKKRGSFKAKLTHFNNFLRLLPSNTDLD
FT                 HFQEVELQNRLSLMETLYKEFDVLQTELEVLSENTDDMYAEREQFETQYHA
FT                 SVARARACLASARSSSPALVSASSTDNLAPHGSGCKHDFVRLPKIDLPHFN
FT                 GDYQHWLEFRDTYISLIHNNSSIQDINKFHYLRAALIDSASLVIKSIEFKA
FT                 DNYNIAWQILTERYDNENLLVNNHLQSLFNFEPIRQESSSALRNMIDVTNK
FT                 NLRALETLGHPTQHWDILIIYMMSKKLDSVTIREWEKFKNDSDTFPHLKQF
FT                 LKFISNRADLLESLSHNNNTSLTNITFTKNTNEHNKSKDYLTTNKSKPIHS
FT                 SESIKCPMCSQNHFLFSCQSFRDLNIEARIKKALQSNVCMNCLRPGHTIKR
FT                 CKLSHCKYCKSKHNTLLHRESQNELQSENNVALSTNVVLPSLNYYKNQILL
FT                 STALAKVADVNGHLHTARLLLDNGSTSNFVTRELCGRLGLVTHSTNSTVTG
FT                 INGQVSSTTESCLLRVQSCYGGYQATVXCFVLPTITQSMPGSYVDKKYITI
FT                 PPGIQLADPSFNVPSAINILVGAEVFWDVLGSDTINLGKHQPRLQSSKLGW
FT                 LISGCVTQSPRRTPPSYCHFLTHEESDQLTRFWELETVSTGNCFSSEEQAC
FT                 EKLFQETTRRDTNGQFVVTIPLKDSPECLGDSYALAKRRFLSLERRFERDP
FT                 TYKQRYLHFMQEYIDLNHMTEHSNTDRTHIYFVPHHGVIRESSTTTKLRVV
FT                 YDASASSTSGKSFNDIQMVGPTVQEDLXSILLRYRQHLFVITGDIEKFYRA
FT                 VLVEPSQRPLQQILFRFNDSDPLXKYTLNTLTYGTSSAPYLATKCLVSLSN
FT                 ECPDPGVSQSISRDFYVDDYLSGGDSIESVINLCQGVVSTLESAKFHLRKF
FT                 QSNSPKILQSVTKFNSENNNKTLNLDHTPNKTLGLYWDSKSDILFFSITLK
FT                 PISKITKRNILSLVSQVFDPLGLVGPCIVQAKLILQQLWLLKCNWDDEVPT
FT                 EIKTQFLEFIQSLSALNSLQIPRCIRTHSTDKTYFELHTFTDASERAYGAC
FT                 TYVRMVALDGXVCVRLLASKSKVAPIKPTTIPRLELCGALLGARLYQKVRK
FT                 SLTLEFNECFFWCDSTIVLGWLTTLPSRLDQFVRNRVSEIQETTGNHTWNY
FT                 VPSKSNPADLASRGVKADCISSSTLWWSGPEFLNQKEIQFPTSPNTQKQPL
FT                 PETSLHTVTKQNKQYKNNLISNLIHTKSSFTSLIRITAYIQRFINNCKKHN
FT                 HKKSSHLTYSELQSSQNLIIHISQQEMFPDEYESLKTNQTLHKKNRLISLS
FT                 PFIDSDNLIRVGGRLKNSHYSYDLKHPILICSKHALTKLIFEKEHKTLFHA
FT                 GPQLLLAHIRLTYWPLAGRNLAKQIVRNCVRCTRFKAQPVQVVMGNLPRDR
FT                 TQLEYPFLNTGLDYAGPVLIADRKGRGCKLIKSYICVFVCFAVRAVHLELV
FT                 TDLTKEAFLAAFSRFISRRGLPQRVYSDNGTTFVGAFNELSRFLKASSNDI
FT                 ASEVANKGIEFRFIPAYSPHFGGIWEAAVKSTKYLLRRVMSLTHLTYEELS
FT                 TCLYQIEAILNSRPLTPLSTDPSDLSYLSPSHFLIGRPLTSVPRPEFTDRN
FT                 IQSLHRFHRIEKLRQHFWQRFANEYVSLLQQKTKWQTAGQDLKIGTMVLIR
FT                 DANLPPLLWMLGRVIAVKPGSDGHNRVAEILTKKGTITRAYNNICPLPVSS
FT                 SSPTS"
XX
SQ   Sequence 5796 BP; 1724 A; 1328 C; 1049 G; 1690 T; 5 other;
     gtggtccttc gaagaacctc gccagtggtt ctacaaagaa gatatttgcc gttcttactg        60
     tgccacgcca cccgtggact ttggactgcc cgctcgtacg atcgcctcca cgtgttagtg       120
     gacacgcaga agacagtcta tccagggagg aacataattc tgagtgagtt cgttccgatc       180
     tccttaattc ctgtcttttt attgccctat ttccaggaat ttaaaatagt gctatactac       240
     ggatcagtca tagttgatct cttcatatgt tatagcttaa ttcaaattta attgcattca       300
     ttaattttac aaaaaacatc tagctttatc gccatagcaa aaaaaacata cgttcgtcat       360
     tgcacgctta ttgcaccgat gcagttttaa acgtaaacaa agtcattagt accatttttt       420
     ttgcttatct aaaccggttg cagtggctta taagcgttat aacatctgtt caacggtaac       480
     tttccataca gattctaata cattgtagct gtttatgttt taatattttt ctacactctt       540
     cggcttattc aagtttcgcc ctttgccttg tctttccttg cttaccatta tggctgatgc       600
     aaagttaagg gacttagtta agaagcgtgg tagttttaaa gctaagctta ctcattttaa       660
     taacttttta aggttactac ctagtaatac agacttagac catttccaag aagtcgaatt       720
     acaaaatcgt ttgtcgttaa tggaaacttt atataaggaa ttcgacgtgt tgcagactga       780
     gttggaggtg ctgtccgaga acacggacga tatgtatgcc gagagggagc agttcgagac       840
     gcagtaccat gcgtcggtgg cgcgcgcgag agcatgcctc gcctccgcgc gttcctcctc       900
     gcccgcgctc gtctctgctt cttcaactga taatctcgcg ccgcacggct ctggctgcaa       960
     gcacgacttc gttcgactgc ccaagataga cttgcctcac ttcaacgggg actatcaaca      1020
     ctggcttgaa ttccgagata cgtatatttc ccttattcat aataatagta gcatacagga      1080
     tattaacaag ttccactacc ttcgtgcagc tttaatcgat agtgcatctt tagttattaa      1140
     aagtattgaa tttaaagccg ataattacaa tattgcttgg caaatattaa ctgaaagata      1200
     cgataacgag aaccttcttg ttaataatca tctacagtca ttatttaact ttgaacccat      1260
     tcgacaggaa tcatctagtg cattacgtaa catgattgac gttacaaata aaaacctccg      1320
     agctctcgaa acacttggac atccaacaca acattgggac atattgatta tttacatgat      1380
     gtcaaagaaa ctagattcag tgaccattcg tgagtgggag aaatttaaaa atgattcaga      1440
     cacatttcca cacttaaaac aattcttaaa atttatttct aacagagctg acctacttga      1500
     atctctgagt cataacaaca acacatcact tacaaatatc acatttacaa aaaatacaaa      1560
     tgaacataat aaatctaaag attatcttac tacaaacaaa tcaaaaccta tccacagttc      1620
     tgagagtatc aaatgcccta tgtgttctca gaatcacttt ttatttagtt gtcagtcatt      1680
     cagagaccta aatattgaag ctcgcataaa aaaggcattg caaagcaatg tttgtatgaa      1740
     ctgccttcga cctggtcata caataaagcg ttgcaaatta tcacattgca aatattgcaa      1800
     gtccaaacac aacaccctct tacataggga gtcacaaaat gagcttcagt cagagaacaa      1860
     tgtagcattg tcaacaaatg tcgtattgcc ctcactgaac tattataaaa atcaaatttt      1920
     actttccaca gcattggcta aggtggcaga cgttaatgga caccttcata ctgccagact      1980
     cctattggac aatggcagca cctccaactt tgttacccga gagctctgtg gaaggcttgg      2040
     tctggtgact cacagcacta actccaccgt cacaggtatt aacggacaag tatctagtac      2100
     cacagaaagt tgtcttcttc gggtgcaatc ttgttatggt ggttatcagg cgacggtawg      2160
     ctgttttgtc ttacctacta tcacacaatc gatgccaggc tcttacgtgg ataaaaaata      2220
     cataaccatt ccgcctggta ttcaattagc agatccttca tttaatgtac cttcagctat      2280
     taacattctt gtaggcgctg aggtattttg ggacgtctta ggttccgata caattaattt      2340
     aggtaaacat caacctagat tacagtcatc aaaattaggt tggctcatct cgggctgtgt      2400
     cactcagtct ccgcgacgca caccaccctc ttattgccac tttcttacac atgaggagtc      2460
     tgatcaactg actcgtttct gggaactcga aactgtatcc actgggaact gtttttcttc      2520
     agaagaacag gcctgtgaaa aactttttca agaaactaca cgtcgtgata caaatggaca      2580
     gtttgtggtc accatacctt tgaaggactc acccgagtgc ttaggtgact cttacgcgct      2640
     ggccaagcgt cgctttcttt ccctcgagcg taggtttgag cgagacccaa catataaaca      2700
     aagatattta catttcatgc aagaatacat tgaccttaac catatgacag aacattcaaa      2760
     cacagacaga acacatattt attttgtgcc tcatcacggt gttattcgcg agtcgagtac      2820
     aactacaaaa cttcgagtag tttacgacgc ttcagcctct agcacctcsg gcaagtcctt      2880
     caatgacatc cagatggtag gtccgacagt acaggaagat ttamtgtcta ttcttttgag      2940
     atacaggcaa catctatttg ttatcacggg cgacattgaa aaattttata gagcagtgtt      3000
     agtcgagcca tcgcaacgcc ctttacaaca gattctcttt agattcaatg attcagatcc      3060
     gttgaakaaa tacacactaa acacattgac ttacgggact tcttcagctc cttatttagc      3120
     caccaaatgc ttggtgtctc tgtcaaatga gtgtccagac ccaggggtta gtcagtctat      3180
     cagtcgtgac ttttacgttg atgattactt gagtggcggt gactcaattg agtcagtcat      3240
     caatctttgc caaggtgtag tcagcacact cgagtcagca aagtttcacc ttcgtaaatt      3300
     tcaatcaaat agtcctaaaa tattacaatc agtcacaaaa ttcaattcag aaaataacaa      3360
     taaaacttta aacttagacc atactcctaa taaaacactt gggctatatt gggactctaa      3420
     atcagacata cttttctttt ccataacatt aaaacccatt tctaaaataa ctaagcgcaa      3480
     catattatct ttagtaagtc aggtatttga tcctcttggc ctcgttgggc catgcatcgt      3540
     tcaagccaaa cttattttac agcaactgtg gttattaaaa tgcaactggg atgatgaagt      3600
     accgactgaa ataaaaacac agtttcttga gttcatccaa tcactttcag ctctcaattc      3660
     tcttcaaatt cctcgttgca ttaggacaca ttctactgat aaaacttatt ttgaactgca      3720
     caccttcaca gacgcttcgg aacgtgctta tggtgcgtgc acgtatgtga ggatggttgc      3780
     actcgacgga amcgtttgcg ttcgcctgtt agcctctaag agcaaggttg ctcccataaa      3840
     acccactacc ataccacgtt tggagttgtg cggtgcgttg ctaggcgcac gactttatca      3900
     aaaggtacgc aaatcactca ctctagaatt caatgaatgt tttttctggt gtgattcaac      3960
     gatcgtgttg ggttggctga ctacattgcc gagtcgactc gatcaatttg tccgcaaccg      4020
     agtgagtgag attcaagaaa ctacgggcaa ccatacatgg aactatgtgc cttcaaagag      4080
     caaccccgct gatcttgcat ctcggggggt gaaggctgat tgcatcagtt cgtccactct      4140
     ttggtggtcg ggcccagaat tcttgaatca aaaagaaata caatttccca cgtcacccaa      4200
     cacacagaaa caaccattac ctgaaactag tttacatacc gttactaaac aaaataaaca      4260
     atacaaaaat aatctaattt ctaatttaat acacacaaaa tcatcattta catcattaat      4320
     tagaattaca gcctatatac aaagatttat taacaattgc aaaaaacata atcacaaaaa      4380
     atcatctcat ctaacatatt cagaattaca atcatcacag aaccttataa tacatatttc      4440
     tcagcaggaa atgttccctg atgaatacga gagtcttaaa actaatcaga ccttacacaa      4500
     aaagaatcga ttgattagtc tttcaccttt catcgattca gacaacttaa tacgcgtcgg      4560
     tggacgtctt aaaaactcac actatagcta cgacctaaaa catcctattc ttatatgtag      4620
     taaacatgcc ttaacaaaac tcattttcga aaaggaacac aaaacacttt ttcatgcagg      4680
     gcctcaacta cttctggcac acattagact tacctattgg cctttagctg gcagaaactt      4740
     agctaaacag atagtgcgta actgtgttcg ttgtactcgt tttaaagctc aacctgttca      4800
     ggttgtcatg ggtaacttac caagagatag gacgcaactc gagtatcctt ttttgaatac      4860
     agggctagat tacgccgggc cagtgttgat agccgaccgc aagggtagag gatgtaagct      4920
     tataaaatct tatatttgtg tttttgtctg ctttgcagtc agagccgtgc atctggagct      4980
     tgtcactgac ctcaccaagg aagctttcct tgcggccttc agccgattca taagtcgtcg      5040
     tggtctacct cagcgagtct attccgacaa cggcactact ttcgtgggag ctttcaacga      5100
     actttcacgc ttcttaaagg cttcgtccaa tgacatagcg tcagaggtgg caaacaaggg      5160
     cattgagttt cgctttattc ctgcctattc cccacatttt ggtggtattt gggaggcagc      5220
     agttaaatcc accaagtatt tattacgtcg cgtcatgagc ttaactcatt taacatatga      5280
     agagctctca acgtgtctgt atcagataga ggccatttta aactccagac ccttaactcc      5340
     tctatccact gatccatctg acctttcata tctttcccct tctcatttcc tgatcgggcg      5400
     accactcact tcagtacctc gtcctgaatt caccgaccgc aatatccaga gccttcatcg      5460
     ctttcatcgc atagaaaaac tgcgacaaca tttttggcag cggtttgcta atgagtacgt      5520
     gtctcttctg cagcagaaaa ccaaatggca gacagctggt caagacctga agataggcac      5580
     catggtccta ataagagatg ctaatctccc tcctctcctg tggatgctgg gcagagtgat      5640
     cgccgtgaaa ccaggatcag atggacacaa cagagtcgcc gagatcttga cgaagaaggg      5700
     caccattaca cgtgcataca ataacatttg ccctcttcca gtctcgtcat catcaccaac      5760
     atcttgaagc cttcatacgc ttcaacccgg ggaata                                5796
//
ID   BEL-6_SpEx-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-245
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6877-6877 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 245 BP; 55 A; 84 C; 52 G; 53 T; 1 other;
     tgttccggac cttcacatcg tgccggcctg agacaccgtg tcatcgtgcg tcatcgtgcg        60
     ccccaccagc gctaggccct cgaccatacg ccgcgcgccg gaccccgsca ctctcgctca       120
     ccgaccatta ctgtgcgcac atatcggcca tactcctttg tgaataatac agtctttata       180
     tcgaaaatag gggttttatt tagttgagac caccagcagc acaactggag ctcaacaccc       240
     caaca                                                                   245
//
ID   BEL-6_TrNi-I repbase;    DNA;    INV; 6076 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6076
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1031-1031 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           809..6043
FT                 /product="BEL-6_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MTEERELVKKRGSFKGRLTAFVNYLDGLDRCKSMSSC
FT                 DVTELQLRVGKMESLYEQYDEVQLKLECVVDDIKLQLAERSEFESLYYKSL
FT                 SRAQNLLSSLNKDNESVSSGKSTRASNYKPVKLPTIQLPKFSGSYSNWLEF
FT                 HDTFTSLIHSNDSIDVINKFHYLRTSLEGSAAVVIQSIEFSASNYDVAWKV
FT                 LCERFDNKRLLIHNHVSAIFNIDPISKESSSVLKGLIDQLNKNLRALETLG
FT                 EPVKYWDTLLIFIITRKLDSKTFREWEECKGRINKETSITFDTFLTFMRAR
FT                 ADLIETLELSRNNSSHSQMNIKSHSKVKSMVSVQNNSGSNLDSSKVCPKCK
FT                 ADHTLGNCPQFLALSNEARLKLLPIYKVCFNCFRPGHFANHCKKSGCKLCK
FT                 RRHNTLVHVAEFNNIANTRQDSNNSCDNLSLQSPPLLSSMSAAKTNDVALS
FT                 ANITSSGISHNDVLLSTALVKLHDRDGREHIVRAVLDCGSTSCFITQKLCS
FT                 QLNLSTKKIDKSIFGINNVTSHVGKICRINVTSLNNCFSTELCCFVLPLIT
FT                 SEMPCRELNITNLNIPANLCLADPKFYKPADVDILIGADAFWDLLGSQRIN
FT                 LGNGKPILFETSLGWIVSGPISRNHVTLNANRIRCHFSKLGSTNSDELSNL
FT                 RSELTKFWQLEEIHSNVSHYSSEEKSCEDHFVKNTTRLANGRFCVRIPLKQ
FT                 DPSVLGDSLRKATYCLHSLERRLKTKPDLGKMYDAFMSEYELLGHMTQFKP
FT                 SDTDPTGYYIPHHGVLREQSTTTKLRVVFNASCPTSSGISSNDIQMVGPTI
FT                 QDDLLAILLRFRQYKYVLSGDVQMMYRCVDVHPSDRHLQQILWRDNSSQVQ
FT                 VYKLNTVTYGTASAPFLATRCLYQLGLDCKDDKIADVIKHDFYVDDLLTGG
FT                 DDLNTVSHIRQEVTKALSSACMVLRKWKSNAPQLLSDISESSLDLNIGSPE
FT                 PTKLLGLGWHASSDELMFLVDSTISHTNSTKRDLLSVIAKIFDPLGLLSPL
FT                 VITMKMLLQRMWLDKLSWDEPLSPELSAPWQAIVRKLPLINDFRFPRIVVC
FT                 ESYTQLELHIFTDASERAYGACAYVRSANDEGKCMVRLLMAKSRVAPIKPT
FT                 TIPRLELCGAVVGTHLYEKISKSLRVRFSRVFCWTDSTIVLGWLQMLPSRL
FT                 QPFVRNRVAEVLEQAGHCTWRHVPTDKNPADLISRGVDISNLQSLDLWWSG
FT                 PDFLHQDSCYWPSLVKPLEPASLPETRSDVILTVSVDHNKNKQLINFSRFS
FT                 NYSRLVRSMAYVLRFLKLCKGHQYNGSFLSSDELNKALNVLIIQSQRESFT
FT                 EYNLLLSKQDLPKKSVLLKFNVYLDNDDIMRVGGRLDYSDFNYNKRHPILL
FT                 QSTHHFSKLLCDFEHKRLMHAGPQLLLASLRETYWPIGGRNLAKACYHKCV
FT                 LCRRMKGKVVTPLMGNLPRQRLLPGSFPFESTGVDYAGPILSASRKGRGCR
FT                 LVKVYIALFICFTTKAIHLELVGNLTSHSYLLSLYRFIARRGKPVNIYSDN
FT                 GTSFVGAYNELAKFLKCNHDSLSTSMANEGINFHFIPAYAPHFGGLWEAGV
FT                 KSVKHHLYRVLGNCNLTFEELYTTLVQIEAILNSRPLTPLSSDPADCTPLT
FT                 PGHFLIGRPLTSLPQPNLEEHSTTNLTRYQRIEQLRQHFWTRWSKEFIAEL
FT                 QQRVKWHSSKDSLKLDTLVVIKEENLPPLKWRLGRIVAIHPGTDGIARVAD
FT                 VKTSNGIIRRAFSKICPLPVTTESG"
XX
SQ   Sequence 6076 BP; 1765 A; 1160 C; 1249 G; 1902 T; 0 other;
     tggtcctaac gaaccggatt atctgaagat cagttaatat tatttattga agaaaattaa        60
     ggaatattta accaggattt ttaattaaat aaccgaaaca actgttggct gtgaagtttg       120
     cgaaaggagc acaaaaacta tgtggtgtta attttagcat tattataatc tcggaaccca       180
     acactctaat caggtattct tattcatgtt attagtggat tcttcaggtt agtgtaccta       240
     taagttttta tattgttaat tattagatta tccatgtgca atttcattac gattgtgaat       300
     agtgtttttt ttgtcaatgt actgtaatta aattgaaact aatacttatt attggttatt       360
     gttaaaagta tagtaattat tattacgtta tttcaattta attaacagtg tgcaaattaa       420
     aagttaaatt aaaatttgtg tgacaagtta ttcacaatca gtaggtagga atttgtaggt       480
     tcctgtgtac ttggtattac aatataatat ttagtggagt gttagagtac ctaattaaaa       540
     ctttgttact tgagatagct aagttaacaa tcaaataacg cataggttaa agataggaat       600
     tacgtaatta tattttacgc tttgtcgttt ggataataat atctagttga gttgcataac       660
     attggcacac gtagtcactt ctcagtaaat tgcaagtatt tgtttctaat taccgtcgag       720
     tttacattaa atataaagtt aagtacatat atagtttgtt ttcgccttat tattgtaaat       780
     tacaggtttg agtcacccga ttcccaatat gaccgaggaa agggagcttg taaagaagcg       840
     aggcagcttc aaagggcgtt taactgcatt cgtcaactat ttagatggcc ttgatagatg       900
     taaatcgatg agtagctgcg acgtcaccga actacagctg cgcgttggca agatggaatc       960
     attgtacgaa caatatgatg aggtacaatt aaaacttgag tgcgtcgtcg atgatattaa      1020
     attacaatta gctgaacgtt cagagtttga atctttatac tacaaatcac tttctagggc      1080
     tcaaaatttg ttgtctagtt taaataaaga taatgagtct gtcagtagtg gcaaatccac      1140
     tcgtgctagc aattataagc ctgtcaagtt acccacaatt cagcttccta agttcagtgg      1200
     ttcctatagc aattggctgg agttccatga tacttttacg agtcttatcc actctaacga      1260
     tagcattgat gtaataaata aattccatta tttacgtacg tctttggaag gttccgctgc      1320
     tgttgttata cagtcgatcg agttttcggc cagtaattat gatgtggcat ggaaagtttt      1380
     atgtgagcga tttgacaaca agaggttgtt aatacataat catgtgtcag caatatttaa      1440
     cattgaccca atttccaaag aatcgtcatc agtattaaag ggattaattg atcagttaaa      1500
     taaaaattta cgtgctttgg aaactttggg tgaacctgtt aagtactggg acacactttt      1560
     aatatttatt atcactcgta agttggacag caaaacgttc cgtgaatggg aggagtgtaa      1620
     gggtcgtata aacaaggaaa catcgattac ctttgataca ttcctcacct tcatgcgtgc      1680
     gcgcgctgat ctaatagaaa ctttagagct gtcacgcaat aactcgtctc actctcagat      1740
     gaatattaag tcacattcta aggtcaagtc tatggtctcg gttcaaaata atagtggttc      1800
     taatttagat agttctaagg tatgtcctaa atgtaaagct gaccacacct taggcaactg      1860
     tccgcagttt ttagcattaa gcaatgaagc tcgtttaaaa ttattgccta tatacaaggt      1920
     ttgttttaat tgttttcgcc ccggtcattt tgccaatcat tgcaaaaagt ctggttgcaa      1980
     actttgtaaa cgcaggcaca atacgctagt acatgtagct gaatttaata atattgctaa      2040
     tacgcgccag gatagtaata attcgtgcga taatctctca ttgcagtccc caccgctgtt      2100
     gtcgtcgatg tcggccgcta aaacgaacga tgttgcgtta tcagcaaaca tcacatctag      2160
     cggtattagt cataatgacg tgttattgtc aactgcttta gtcaagttac atgatcgtga      2220
     tggtcgtgaa catattgttc gcgcagtgct tgactgcggc agcacatcgt gtttcattac      2280
     acagaaatta tgttcacaat tgaacttgtc tactaaaaaa atagacaagt caatatttgg      2340
     cattaacaac gtgacgtcac acgtaggtaa aatatgtcgc atcaacgtga catcattaaa      2400
     taactgtttc agcactgaac tttgttgttt tgttttgcca ttaataacga gtgaaatgcc      2460
     atgtcgtgaa ttaaatatta ctaacttaaa cattcccgcc aatctttgtt tagctgaccc      2520
     taagttttac aagcctgctg atgtggacat attaattggc gctgatgctt tctgggactt      2580
     attagggtcg cagcgaataa acttaggtaa tggtaaaccc atattatttg aaaccagttt      2640
     aggctggata gtgtccggac ccataagccg caatcatgtc acattaaatg caaatagaat      2700
     taggtgtcat ttttctaaat taggttctac taattctgac gagttaagca acttacgaag      2760
     tgaactgact aaattttggc agctagagga gatacattca aatgtttctc attactcctc      2820
     agaggaaaaa agctgtgagg atcattttgt taaaaataca actagattgg ctaatggtcg      2880
     cttttgtgta cgcatacctc ttaagcaaga cccttctgta ctcggagact cacttcgtaa      2940
     ggccacttat tgtctgcatt cgttagagcg tagattaaaa acgaaacctg acttaggcaa      3000
     aatgtatgat gcatttatgt ccgagtacga gttgctcgga catatgactc aattcaagcc      3060
     atcagacact gacccaacag gttactacat tccacatcat ggtgtactac gggaacagag      3120
     taccaccaca aaactgcgcg ttgttttcaa tgcaagttgt cccacatcgt ctggaatttc      3180
     atccaatgac atacaaatgg tcggtccgac aattcaggat gaccttctgg ccattctttt      3240
     gcggtttagg cagtataagt atgtcttatc gggagatgtt cagatgatgt acaggtgcgt      3300
     ggatgttcat ccatctgata gacacttaca gcagattttg tggcgagata attcatcaca      3360
     agtacaagtt tataaattaa atacggtgac ttatggcact gctagtgctc cgtttttagc      3420
     cacccgctgc ctttatcaat taggtcttga ttgcaaggac gacaagattg ctgatgtcat      3480
     caaacatgac ttttatgtag atgacctgtt aactggaggg gatgacttaa atacagtcag      3540
     ccacatccgc caagaagtca caaaggcact ttcgtcagct tgcatggtac ttcgcaaatg      3600
     gaagtcaaat gcacctcaat tgttgtctga tatttcagag tcatcgcttg atttgaatat      3660
     tggctctcct gagccaacca aactattagg tttagggtgg catgccagtt cagatgaact      3720
     gatgttctta gtcgactcaa ccatctctca cactaatagc actaagcgtg atttgctttc      3780
     tgtcattgca aagatctttg accctttagg tttgttgtca cctttagtga tcacaatgaa      3840
     aatgttactg cagcgaatgt ggcttgataa attgtcgtgg gatgagccat tatctccaga      3900
     attaagtgca ccgtggcaag ctattgtgag aaaattacca cttattaatg actttcgttt      3960
     tccacgtatc gtcgtctgtg agtcatacac acaattagaa ctacacatct tcacagatgc      4020
     ctctgaacgt gcctatggcg cttgtgccta tgttcgtagt gcaaacgatg aaggcaagtg      4080
     tatggtcagg ttactcatgg ccaagagcag agtggcacct atcaaaccaa ctacgattcc      4140
     gagattggag ttgtgtggcg ctgtagtcgg tactcatcta tacgagaaga tatcgaaatc      4200
     actaagggtt aggtttagcc gtgtgttttg ttggaccgat tccacaatcg tgttgggatg      4260
     gttgcagatg ttgccttcaa ggcttcagcc cttcgtgcgc aaccgcgtcg ctgaagtttt      4320
     agagcaggca ggtcactgca cttggcgaca tgtcccaacc gacaaaaacc cagcagacct      4380
     aatatctcgt ggtgtggata ttagtaatct gcagagtcta gacctatggt ggtccggtcc      4440
     cgactttctc catcaagact catgctattg gccatcttta gtcaaacctt tagagcctgc      4500
     ctcactgccg gaaactcggt ctgatgtaat tttaactgtc agtgttgacc acaataaaaa      4560
     taaacaatta attaacttta gccgtttttc aaattattcc cgacttgtac gctccatggc      4620
     ttatgtgttg cgatttctta aattatgtaa agggcatcaa tataatggta gctttctctc      4680
     aagtgacgag ttgaacaaag ctttaaatgt tttgattata caaagtcagc gtgaatcatt      4740
     taccgaatac aatttacttt tgtctaaaca agatttacct aaaaagagcg tcctattaaa      4800
     atttaacgtt tatttagaca acgatgatat aatgcgtgtc ggcggacgtc ttgattattc      4860
     ggattttaat tataataaac ggcaccctat attgttacag tccactcacc atttttcgaa      4920
     attattatgt gattttgagc acaaacgatt aatgcacgcc gggcctcaat tattattagc      4980
     gtcattacga gaaacctatt ggccgatagg aggtcgaaat ttagccaagg cctgttatca      5040
     caaatgcgtg ctatgtcgtc gaatgaaagg taaggttgtt actccattga tgggtaactt      5100
     accgcggcag cgcctacttc cagggagctt tccatttgaa agcacgggcg tcgattatgc      5160
     tggccctata ttgagtgcta gtcgtaaagg tcgtggttgt aggcttgtaa aagtatacat      5220
     tgcgcttttt atttgtttta ccactaaggc gatccatttg gaacttgtgg gtaacctgac      5280
     tagccatagt tatttattat ccttatatag atttatcgcg agacggggaa aacccgtaaa      5340
     tatctactcg gataatggta cctcatttgt tggtgcgtat aatgagcttg ctaagttctt      5400
     aaaatgtaat catgattctt tgagtacaag tatggccaat gagggaatca attttcattt      5460
     tattcctgcc tatgcccctc acttcggtgg tctatgggaa gcgggtgtca agtcggtcaa      5520
     gcatcatttg tatagagtgc tgggaaattg taatttaacg tttgaggaac tttacaccac      5580
     attagttcaa atagaggcta tattgaattc gcgccctctt acaccattat catcagaccc      5640
     agcagattgc acgccgctga ctcctggtca tttcctcatc ggtcgcccgc tcacttccct      5700
     gcctcaaccg aatttagaag agcactccac taccaacttg actcgctacc agcggattga      5760
     acaactccgc cagcacttct ggactagatg gagtaaggag ttcatcgcag aactgcagca      5820
     acgcgtcaag tggcattcca gtaaggatag tttgaagttg gataccttgg tagtaatcaa      5880
     ggaggaaaat cttccgcctt taaagtggag attgggcagg atcgtggcca tacatccggg      5940
     aaccgacgga atagctcgtg tcgctgacgt caagacctca aatggtatca tccgaagggc      6000
     tttctccaag atatgtccat tgccggtgac tacagagtct ggttgaaagc aaggaggctt      6060
     tcaacgcccg ggggca                                                      6076
//
ID   BEL-6_TrNi-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-6_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-202
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1041-1041 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 202 BP; 62 A; 42 C; 24 G; 74 T; 0 other;
     tgttcgagcg cctcatgttt acatcgtagc aatgactcac tcattagtat taagtaaata        60
     ttaagattac attaattcat atttgttgca tcgtcacatg cataacctgt tatctttttt       120
     cactccatta tacacgctcg caagatcaac atcattttta aaagtagttt catttatgaa       180
     tctgaatcct gaattcccaa ca                                                202
//
ID   BEL-700_AA-I repbase;    DNA;    INV; 5938 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-700_;
KW   BEL-700_AA-I; BEL-700_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5938
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5938
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 319-319 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..5879
FT                 /product="BEL-700_AA-I_1p"
FT                 /translation="MDVIYPCCEEDDQYDAMVQCSRCQKWHHFSCVGVDQS
FT                 IAELVWYCRKCLGEDVSARESLGQPGVTRIQPSRAAKKGKDHTGKISDKTS
FT                 QKRIDILVGTKGQKEVAERPTSQQEGNKGQETCQAGTSAAGQTSIPKSVKP
FT                 SRSRVSIISENSRSESSKSGKNSKISGTSKSSSSKRDLALKRIEELKERSR
FT                 LEALEEETQLQMLKVKQKQIERQRRELEELQQLSKLVEEDSECNEEIDERG
FT                 ESDISYTSKVQGWMNSCNAVDPVMLRQSNTASEANDRQFSFLPPEHVQQRS
FT                 STMAVGPTTFQIAARQVFPRNLPAFEGHPQDWPLFISAYEQANASCGFTNA
FT                 ENLVRLQQSLQGKALEIVRNLMLLPENVPTIINKLRRRFGNPEILSSMLAQ
FT                 RIQKLEGPDSENLESLIEFGSAIGEFTQHLEVSKLHDHLKNPILMQSLIQK
FT                 LPPCYAMQWVEYKRNFQVVDLKTFGKFMEDLVDKALEVTFERIDVSSSKRR
FT                 EKPKAKIFTHMMKEDNETIGAKGNIYNKTQPPQFQSAQRKDISCSICDQPG
FT                 HFGRDCREFRNTSLERRWMLVKHMGLCPLCIFNHGKWPCRTKNRCEIEGCN
FT                 GSHHTLLHDPVNTEATKAEARCNSHCLPNKTVLFRIIPVTLYGEHRSYNTL
FT                 ALVDEGSSTSLIDNEVAEFLQLDGPREPFEMRWTNGVSRTETHSRNVQMEI
FT                 AGIERKKESGVCVARTVNKLDLPAQELHADRLIGEFRHLEGVEILSYELDT
FT                 PKLLIGIDNMHLIAPVASRIGEKGQPIAVKCKLGWTIYGPRPNLLSVVHFL
FT                 GHHRCVCEECSKADHNLNQMLRDSFQLEAVGVSPVRLESTDDYRAREILER
FT                 TTRRVGERFEIGLLWKDGAPRFPNSYYMAYKRLKNLENRMKRHPGIREILQ
FT                 KQIDEYVVKGYAHKITERELLETPPEQCWYLPLNYVVNAKKPGKVRMVWDA
FT                 AARTNGVSFNDSLLKGPDLMTSLSGVINGFRERKVAFGGDIREMFHQILVR
FT                 QEDKQAQRFLFRCDVNSEPDIYVMDVVIFGASCSPCLAQFVKNLNAQEHQK
FT                 NHPIASDAIVRKHYVDDYFDSADTESEAIAIAKDVREVHANAGFEIRNWLS
FT                 NSPKVLKELGEADSNMTKSFDTASDAERVLGVMWRPDSDSFVFSTEFREDL
FT                 RPYIREGAWPTKRIALRCIMSMFDPKQFLAPLLIHGRILMQDLWRSGINWD
FT                 EKVERAHYDRWLRWTGLFPLIDNISIPRCYLGKMSSNTYDTVQLHVFADAG
FT                 EDAYGCVAYFRFTDGENVHCAFVESKAKVAPLQHLSIPRKELEAAVLGARL
FT                 LKAISENHSFELKRRFLWTDSNAVVSWVKSDVRRYKPFVAHRVGEILSITS
FT                 PEDWHWVPSKDNPADDVTKWGEATQISSSNRWFCGPKFLYQAECDWPVQRW
FT                 KALEIEEEVRANVLFHDIILPDAVLSRVKHISRWKVLIRMVASMHRFVSNC
FT                 RRRINKQPIEALPTSKKGTVKIPAKLVPLRQEEYLLAENLIWRVAQSEEYA
FT                 DEVKTLIKHQNSPIDQLRTIEKSSPLYRLSPFLDEYGVMRMEGRTTAASYA
FT                 TCDVRFPVILPKEHMIVRKLVEFYHQECGHGSREMVINEVLQRFYIAGLRS
FT                 LVERVIRDCLWCKVRKAKPIVPRMAPLPISRLAVNEHPFSYVGLDYFGPIE
FT                 VTVGRRREKRWVALFTCMTVRAVHLEAVHSLTTQSCEMAIRRFVKRRGSPV
FT                 EIFSDNGTNFVGANRDLEEQIRTINAECADTFTGARTKWTFNPPAAPHMGG
FT                 VWERMVRSVKEAMAVFADGEKLTDEILQTTLVEAETLINSRPLTYVSTNIQ
FT                 EDKEALTPNHFLMSCPLIDCMASRSPTELADRLRNSYSQAQYLADELWKRW
FT                 QREYLPLLNRRTKWFDESKPVAIGDLVYVADSEKRRTWERGVIEDVFPGND
FT                 GRIRSAMVRTSTGLKKRAVAKLAILEIGA"
XX
SQ   Sequence 5938 BP; 1814 A; 1139 C; 1549 G; 1436 T; 0 other;
     aacctcaaaa aaatttatcg atggatgtga tctacccgtg ctgcgaggaa gacgaccagt        60
     atgacgcgat ggtgcagtgt agtcggtgtc aaaagtggca ccacttttca tgtgtcgggg       120
     tggaccaaag catagcggag ctagtgtggt actgccgtaa gtgcctcgga gaggacgttt       180
     cagcacgtga gtcgttaggg cagccaggcg tcacacgtat acaaccttct agggcagcaa       240
     agaagggtaa agatcacacc ggtaagataa gcgataagac cagtcagaaa cgaatagata       300
     tactagtcgg aacgaaaggg cagaaggaag tggctgaacg gccgacaagc cagcaagaag       360
     gaaataaagg tcaagaaaca tgtcaggcag ggacatcagc ggcaggacaa acaagtattc       420
     ctaagtcagt caagccgtcg cgtagtcgcg tttcgattat cagtgaaaat tctcgttctg       480
     aaagtagcaa aagtggtaaa aattcaaaga taagtggcac cagtaagtcg agtagttcta       540
     aacgtgattt ggcgttgaaa cggattgaag aattgaagga aaggagtcgt ttggaagcgc       600
     tggaagaaga aactcaatta cagatgttga aggtaaagca gaagcagatt gaacggcagc       660
     gacgcgagtt ggaagagttg caacaacttt ctaaattggt cgaagaagat tccgagtgca       720
     atgaggaaat cgacgagcga ggtgaaagcg atattagtta caccagtaag gtacagggat       780
     ggatgaactc ttgtaacgca gtggatcctg tgatgttgcg gcagtcgaat accgcttcag       840
     aggcaaatga tcgccagttc tccttcttgc ctccagagca cgtacagcag aggagttcca       900
     ccatggcagt aggtccgaca acgttccaga ttgctgcacg tcaggtgttc ccgagaaatc       960
     ttcctgcttt cgaagggcac ccacaagact ggccactttt catcagcgct tatgaacaag      1020
     cgaacgcatc ctgtggtttc accaatgcag agaacctcgt cagacttcaa cagtcactgc      1080
     aaggaaaagc gttagaaatt gtacggaatc tgatgctgtt acccgaaaat gtaccaacga      1140
     tcatcaataa gttacgtcga cgttttggaa atcctgaaat tttgtcatct atgctggcac      1200
     aacggattca aaaacttgag ggaccagatt cggaaaattt ggaatcccta atcgaatttg      1260
     gaagtgcaat tggagaattc acgcaacatc tagaggtttc aaaactgcat gatcacttga      1320
     agaaccccat attaatgcag agtctgatac agaagcttcc gccgtgttat gccatgcagt      1380
     gggtggaata taaacgaaac ttccaagtgg tggacttgaa aacctttgga aaattcatgg      1440
     aggatttggt tgataaagca ctggaggtga cgttcgaaag gattgatgta agctcatcga      1500
     aaagacggga aaaaccaaag gccaaaattt tcacccacat gatgaaagaa gataacgaaa      1560
     caatcggcgc taaaggtaat atctataaca agacacaacc accacaattt cagagtgctc      1620
     aaagaaagga catcagttgc tctatctgtg accaaccggg acatttcggg cgggattgcc      1680
     gagaattccg taacaccagc ttggaacgac gatggatgct tgtgaagcat atgggtttgt      1740
     gtccactttg tatattcaac catggaaaat ggccttgtag gacgaagaat cgttgtgaaa      1800
     tagaagggtg taatggttca catcacacat tacttcacga cccggttaat acggaggcga      1860
     ccaaagcaga ggcacgttgt aatagtcatt gtttaccgaa taagacagta ttgtttcgta      1920
     taattcccgt tacattgtat ggagaacatc ggagttacaa tacactcgcg ttagtagatg      1980
     aaggatcgtc tacatcactc atagacaatg aagtagctga atttctgcag cttgatggac      2040
     cacgcgaacc atttgaaatg cgctggacga atggagttag tcgaaccgaa actcactcta      2100
     ggaatgttca gatggagatt gcgggaatcg agcgaaaaaa ggaatcagga gtgtgtgtag      2160
     caaggacggt taataaactg gatcttccgg ctcaagaatt gcatgcagat aggttgattg      2220
     gagaattccg tcacctagaa ggagttgaaa tattgagtta tgagttggat actcccaaac      2280
     tgttgattgg gatcgataat atgcacctca tcgctccggt tgcatctcga atcggagaga      2340
     agggacagcc aattgctgtt aaatgcaaat tagggtggac aatctacggc ccacggccga      2400
     atctactgtc cgttgtacac ttccttggtc atcatcgatg tgtctgcgag gagtgcagta      2460
     aagcggatca caatttgaat cagatgttgc gtgacagttt tcaacttgaa gccgttggag      2520
     tgtctcctgt aaggttagaa tcaacggatg actatagggc gcgagagatt ctcgaaagga      2580
     cgacaagacg agtaggcgaa aggttcgaga tcggtcttct ttggaaggat ggcgcaccga      2640
     gatttccaaa cagttattac atggcttaca agcgattgaa gaatctagaa aatcgaatga      2700
     aacggcatcc gggtatccgg gaaattttgc agaagcaaat tgatgagtat gtggtcaagg      2760
     gttacgctca caagatcacg gaacgtgaat tgttagaaac accaccggaa cagtgttggt      2820
     atttaccttt gaattatgtt gttaatgcca agaaacccgg aaaagtaaga atggtgtggg      2880
     acgctgcagc aaggactaac ggagtctcgt tcaacgatag tcttctgaag ggacctgatt      2940
     tgatgacatc gttgtccgga gtaatcaacg ggtttcgtga gcgaaaggtg gcatttggcg      3000
     gagacattcg agagatgttt caccagattt tggtgcgaca agaagataaa caagctcaac      3060
     gttttctatt tcgatgcgat gtgaattctg aaccggacat ttacgtaatg gacgtggtaa      3120
     tttttggagc aagctgttcc ccttgcttgg cacagtttgt aaaaaacctc aacgctcagg      3180
     aacatcaaaa gaatcatcca atagcatcgg acgccatagt tcgcaaacat tacgttgacg      3240
     actattttga tagtgcagat acggaaagtg aagcaatagc aatagctaaa gatgtcaggg      3300
     aagtgcatgc aaacgctggt tttgaaatac gaaactggtt gagcaactca cccaaagtgc      3360
     tcaaagaact cggcgaagca gattcaaaca tgacgaaatc ctttgataca gcttctgatg      3420
     cagaaagagt gcttggagtt atgtggcgac cggacagtga ttcgtttgtg ttctccactg      3480
     aattcaggga agatttgcgg ccatatattc gagaaggagc ttggcccaca aaacgaatcg      3540
     cattacgctg tattatgagc atgtttgatc ctaagcagtt tttggcgcca ctattgatcc      3600
     acggacgtat tttgatgcag gatttgtggc ggagcggcat caactgggat gagaaagttg      3660
     aaagagccca ttatgatcga tggcttcgat ggacaggatt gtttccactg atagacaata      3720
     ttagtattcc tcgctgctat ctcggaaaga tgagttcgaa tacatatgat actgttcaac      3780
     ttcacgtgtt tgcggatgct ggagaagatg cttatggctg cgtagcatat ttccgattta      3840
     cagacggaga aaatgttcac tgtgcgtttg tagagtcaaa ggcaaaagta gctcctttac      3900
     aacatttgtc tatcccgagg aaggaattag aagcagctgt attgggagcg agattgctga      3960
     aggcgataag tgagaatcat tccttcgagt taaagagacg tttcctttgg actgattcga      4020
     atgcagttgt ttcatgggta aaatcagacg tcaggcgcta taaaccgttc gtggctcacc      4080
     gtgttggaga aatattgagc ataacgagtc cagaagactg gcattgggtg ccttcaaaag      4140
     acaaccccgc agatgatgtt accaaatggg gagaggcgac acaaataagt tccagtaatc      4200
     gatggttttg cggtccaaaa ttcctatatc aagcagaatg cgactggcca gtacagaggt      4260
     ggaaagcctt ggaaatagaa gaagaagtac gagctaatgt gcttttccat gacatcatct      4320
     tgccagatgc agtattatca agggtgaagc acatctcgag atggaaggta cttattcgaa      4380
     tggtggcatc aatgcaccgt ttcgtttcga actgtcgacg caggattaac aagcaaccga      4440
     tagaagcgtt acctacatcg aaaaaaggca ctgtgaagat tccagcaaag ctagttccgt      4500
     tacgtcagga ggagtatctg ttggcggaga atctaatttg gcgtgtagct cagagtgaag      4560
     agtatgctga cgaggtaaag acgttaataa aacatcaaaa ttcgcccatt gaccagttga      4620
     gaacaatcga gaaaagcagt cccttgtacc ggctgtcacc tttcttggat gaatatggag      4680
     taatgcgcat ggaaggcaga acaactgcag ccagctatgc aacttgtgat gtacggttcc      4740
     cggtaattct accgaaagag cacatgattg tccggaaatt ggtagagttt tatcaccaag      4800
     aatgtggtca tggtagccga gaaatggtga taaacgaagt tcttcagcga ttctacattg      4860
     caggactgag atctttggta gaaagagtaa tacgagattg cctttggtgc aaagttcgaa      4920
     aggcgaagcc aattgttcct agaatggcac cacttccaat atctcggttg gcggtaaatg      4980
     aacatccgtt ttcatacgtt ggtctagatt acttcggacc aatagaagtg actgttgggc      5040
     ggaggcgtga gaaacgttgg gtagcattat ttacgtgcat gacagtacgt gccgtgcact      5100
     tagaagctgt ccacagcctg acaacacagt cgtgcgaaat ggcaattcgc cgcttcgtaa      5160
     aacgacgtgg aagcccggtt gaaatttttt ccgacaatgg gacaaacttt gttggagcga      5220
     acagggattt ggaagaacaa attcgaacta ttaacgctga atgtgccgat acgttcactg      5280
     gagcgagaac aaaatggacg tttaatccac ctgcagctcc ccatatgggg ggcgtttggg      5340
     agcgcatggt acgatccgtg aaagaggcga tggcagtatt tgcggatgga gaaaaattga      5400
     cagacgaaat tctacaaact actcttgtag aagcagaaac tttaatcaac tcacggccat      5460
     tgacatatgt atccactaac atacaggagg ataaagaggc gcttactcca aatcattttt      5520
     tgatgagttg ccctttaata gattgtatgg catcaagaag tccaacagaa ctagcagatc      5580
     gactacgaaa cagctatagc caagctcagt acttggctga cgaattgtgg aagcgttggc      5640
     aacgggagta tctacccttg ttgaaccgga gaacgaagtg gtttgacgaa agcaaacccg      5700
     tggctattgg tgacttggta tatgtcgcgg attcagagaa acgaagaact tgggagcgtg      5760
     gagtaattga agacgttttt cctggaaacg atggaagaat acgatcagct atggtacgta      5820
     ctagcacagg attgaagaag cgagcagtgg caaaattagc aattctggag atcggagcct      5880
     aagagtggta agcgcagtag tgactaccat cgactacagg gcttacgggg cggggaga        5938
//
ID   BEL-700_AA-LTR repbase;    DNA;    INV; 627 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.02, Created)
DT   27-NOV-2018 (Rel. 24.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-700_AA-I;
KW   BEL-700_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-627
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-627
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(2), 286-286 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 627 BP; 213 A; 88 C; 137 G; 189 T; 0 other;
     tgttacgccg ggatagaaag ggtgcgctcc gtggacgcga ccttcaaagt gtgtggtgga        60
     atatgtcaag gttttagaca gatgcaatga ctgacaaatc tagggcgctg acatctttga       120
     tgtgtacagc cacaaacaag acgttgttga ttggatagcc gctctttaat tgaattatta       180
     aacataaagg aattgagata gaataattta gataataaaa ttgaatttga attgtattca       240
     agcaaaaagt aagtataaaa gttgtaacca ttgaatctgc ttatctaact tattgcctca       300
     accgtagagc tgcaagtgtt ggaatagcta gaagaaaggc actaaaacga taccaaagtg       360
     attgatagtt gccgtaagta gtaattatat aactgtacaa actgaaatac taatggtaca       420
     atgttgattt ataataggaa ggaaattgta gggagtttga actgttcgaa ggttggattg       480
     atattgcgaa gactaaattt gtaagttatt gtaatacgtg taatgttgtg aatttaaaga       540
     accaatatat ttctagtttt gagtgtgtcg aacaacagta ctccagaaac tggtttttcg       600
     ttatgctgcc tcgaacacct cccaaca                                           627
//
ID   BEL-701_AA-I repbase;    DNA;    INV; 5789 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-701_;
KW   BEL-701_AA-I; BEL-701_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5789
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5789
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 454-454 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..5787
FT                 /product="BEL-701_AA-I_1p"
FT                 /translation="MAENTSGYNCHSCNEHDVVDSMVACDACNNWHHFKCA
FT                 GVDHTVKDRRWICQECESGTSSGLLNPPQLKGKMAKVGGSKTSKSRSKRTG
FT                 KTIGSKVSMTSSARAAALEAQMRLIEEEERLNEAELKQKEELQRQEFAEEQ
FT                 RKLEMKKTLMEEEAKLRESELLKQKALQEKMMLLKRESMEKKKELMRQQAE
FT                 LSESSSSSHISKSERIQNWISSQQQTEGDNLVSHAPRISTSKSRPVNPALL
FT                 XQSNERSVAPSIPASQLANLSLRDDDNRVMNQALPTYMQIAARQVTGKDLP
FT                 MFNGNPEDWPMFIRTYEETTIACGFTDVENLVRLQKCLRGNALETVRSRLM
FT                 MPAGVPHVIKTLQMRFGRPELIIRSLLERIRRVPAPKPERLDTLIDFGLAV
FT                 ENLVVHLQAAKQENHLTNPVLLQELVSKLPAQLKLDWAKYKILRQDSTLTA
FT                 FGEFMNELIQAASEVSFDLPFNLTARTEKSRDREKVYVHAHDAVEMESRVA
FT                 STVKKSHKPCVVCGTMGHRIAECQEFKEKSVDERVEIVRRLNLCRTCLNFH
FT                 QKWPCRTWQGCIFEGCREKHHFLLHPPTSTNSTHLSSTHNTIVGENLGRYP
FT                 YFRILPVIVSVANKQQTLFAFIDEGSSSTLLDKSVAEQLGLDGPIEPLTLQ
FT                 WTGNVERQEAKSKRVHFHITGIEKTSAFQVQDAHTVERLLLPKQSLPYRAL
FT                 AERYPHLRGLPIADYERAEPKILIGIDNLRLCIPLKVREGQGNEPIAAKCR
FT                 LGWAVYGYGERAPSPTVSVNFHVPAARDVDHELNEQLNDFFSLDQLGSKPS
FT                 FDVPESVADQRARKILAETTRRVSERFETGLLWKLDNIEFPDSFPMAVRRL
FT                 ESLERKLSKDSELRDRVHQKMKEYLAKGYCHRASPEELNSVDVKRVWYLPL
FT                 SVVVNPKKPHKVRIVWDAAAEVNKVSFNSALLKGPDLLSNLVFVLYHFREH
FT                 RIAVTGDIEEMFLRLLIRPQDSQSQRFLWRENSRDAPSVYVIDVATFGSTC
FT                 SPSSAQFVKNTNAKEHMETFPRAATAIIKHHYVDDYLDSFETEEEAIEVVN
FT                 QVKFIHSTGGFNLRNFLSNSDAVLLAIDGVSQEDAKQLSLSRAEKVESVLG
FT                 MKWNPSRDVFVYTLTPRQDLVKIIESSHTPTKREMLKLVMSLFDPLGFVTF
FT                 YLIHGRTLIQDVWASGVNWDEPVNDELCQRWRQWISFLPLLNDLKIPRCYF
FT                 RGQMDELKQLHVFVDASDTAYACVAYLRSSGTQGIELALVGAKSKVAPLKV
FT                 LSVPRLELMSAVLGARLAESVVTAHSFNVAETFLWTDSATVLAWINSDHRR
FT                 YHKFVGVRVGEILALTKMNQWRWVPSKENPADDATKWGNGPKFDPGSRWFS
FT                 GPPFLARSETEWPQKRKGVVTSDELIHSLNSHQITIPPLIDTARFHKWERL
FT                 LRTQAYVCRFINNLRCRRNGQMTETGILNRDELKRAEQELWKQAQMEAYGQ
FT                 ERKILLETRGTPDARHNSVPKSSPIYKLWPYIDFDGVVRMRGRIGAAWYSA
FT                 LDARYPIILPKTHQITSLLVDSYHRRYHHANHETVVNEIRQRFQIPNLRSI
FT                 VKQTARKCLKCRIDHAVPRPPPMAPLPEERVTPFVRPFTFVGLDYFGPLTV
FT                 KVGRSEVKRWVALFTCLTVRAIHLEVVHSLSSESCILAIRRFIARRGTPAE
FT                 FFSDNGTSFVGANTQLRREIATRNGVLASTFTNTNTRWNFNPPGAPHMGGV
FT                 WERLVRSVKDAVGTLIDTPRRPTDEVLETVLLDAESMINSRPLTYIPLETA
FT                 DEESLTPNHFLMGSSSGVKQPPSEIEACRTNLRGYWNLAQHLTDIIWKRWI
FT                 KEYLPVITRRGRWFEEVRDVQVGDLVLIVDTAIRNQYVKGRIEQVFPGRDG
FT                 RVRQALVRTANGTYRRPAVKLALLDVGITGKAGQDCSDQLTRLYGRE"
XX
SQ   Sequence 5789 BP; 1652 A; 1357 C; 1423 G; 1356 T; 1 other;
     aaacctttaa gagttttatc aacaaggatg gcagaaaata cttctggata caattgccac        60
     tcatgtaacg aacatgatgt cgtggattcg atggtggcct gcgatgcttg caataactgg       120
     caccatttca agtgcgccgg tgtagatcat acggtgaagg atcgccgctg gatctgccaa       180
     gaatgtgaat ctggaacatc ttctgggctg cttaaccccc cgcagctgaa aggcaagatg       240
     gcaaaagttg gtggtagcaa aacgtcgaag tctcgtagca aaaggaccgg gaagacaatc       300
     ggctcaaaag tcagtatgac ctctagtgcg cgcgccgctg ccttagaagc ccagatgcgc       360
     ttaatcgaag aagaggaacg tttgaatgag gcagagttaa aacaaaaaga agagcttcag       420
     cgtcaggagt tcgctgagga gcagcgtaag ctagagatga agaaaacact catggaggaa       480
     gaagcaaaac tacgagaatc ggaactgttg aagcaaaagg cgttgcagga gaagatgatg       540
     ctactaaaac gagaatcgat ggagaagaaa aaggaattga tgcgccagca agccgagtta       600
     agcgaatctt cttcatcatc ccacatttca aaatctgaac gaattcagaa ttggatctct       660
     tcgcaacaac agacagaggg agacaatttg gttagccatg ccccacggat ctccacgtcg       720
     aaaagtcgtc cagtaaaccc tgctttgctt camcagtcaa atgaaagatc ggtagcaccc       780
     agcattcccg catctcaatt ggcgaacctt tcgttacgcg atgatgacaa tcgagtcatg       840
     aatcaagcat taccaacgta catgcaaatc gctgcccgtc aagttacggg caaggatctt       900
     ccgatgttta acggtaatcc ggaggactgg ccgatgttta ttcggacata tgaggaaaca       960
     acgatcgctt gtggatttac agacgtggag aatttagtcc ggctccaaaa atgtctgcgt      1020
     gggaatgccc tggaaacagt acgcagtcgt ctcatgatgc cagccggtgt accgcacgta      1080
     ataaaaacgc tgcaaatgcg tttcggtcga ccggagctca taatccgttc gttacttgag      1140
     cggattcgtc gcgtaccagc gcctaagcct gagcgcttgg acacgctaat cgacttcgga      1200
     ctagccgttg aaaacctggt cgtacatcta caagcagcca aacaggaaaa ccatctaacg      1260
     aatccagtct tgttgcaaga gctcgtttca aaattgccgg cgcagttgaa attggattgg      1320
     gccaagtaca aaatccttcg tcaagactcg actctcactg catttggcga attcatgaat      1380
     gaacttatcc aagcggccag tgaagtatca ttcgatctac cattcaacct gacggcgagg      1440
     acagagaaat cgagggaccg cgaaaaggtg tacgtccatg cccatgacgc tgtcgaaatg      1500
     gaatcaaggg tcgccagtac agtgaaaaag tctcataaac cgtgtgtggt atgtggtact      1560
     atgggacatc gtattgcgga gtgccaggaa tttaaggaaa aaagtgtcga tgagcgtgta      1620
     gaaatagtgc ggcgacttaa tctatgccgt acttgcttga atttccacca aaagtggcca      1680
     tgtcgaactt ggcaaggatg tatcttcgaa ggatgccgcg aaaaacatca cttcctctta      1740
     cacccgccta catctaccaa ttcgacgcat ttatcatcca ctcataatac aatcgtcggt      1800
     gagaacttgg gacgctaccc atatttccgc atacttccag tgattgtatc cgttgccaac      1860
     aagcagcaaa cgttatttgc gttcatcgac gaggggtcct cttccaccct tttagataag      1920
     tcagttgcag aacagttagg cttggacggc ccaatagaac ccttaactct gcagtggacc      1980
     ggaaatgtcg aacgtcaaga agcaaagtcc aaacgggtac atttccatat cactggaatc      2040
     gagaaaacta gtgcgtttca ggttcaagat gcccacaccg tcgaacgact tctgctgccg      2100
     aagcaatcac tcccgtatcg agcactagct gagcgatatc ctcacttgcg tggacttccg      2160
     atcgccgact atgaacgtgc cgagcctaaa attctcatcg gaattgacaa cttaagattg      2220
     tgcattccac tgaaagttcg tgaaggacaa ggcaacgaac ccatcgccgc aaaatgtagg      2280
     ctgggctggg cggtttatgg atatggcgag cgtgcgccat caccaacggt ctcagtaaac      2340
     tttcatgtac cagctgctcg agatgtggac catgaattaa acgaacaact gaacgatttt      2400
     ttctcgctgg atcagctagg atccaagcct tccttcgatg tcccggagtc ggtagcggac      2460
     caaagagctc gcaaaatatt agcagaaacg acgcgcagag tttctgaaag atttgaaacc      2520
     ggtcttctgt ggaaactcga caacatagaa tttccagaca gttttcccat ggcagtcaga      2580
     agactcgaat cgttggaaag gaaattatcc aaagattccg aattacgaga tcgagtgcat      2640
     caaaaaatga aagaatattt ggctaaagga tactgtcatc gagcaagccc ggaagaacta      2700
     aactctgtcg acgttaaacg ggtgtggtat ctccctttga gcgtagtggt caacccaaaa      2760
     aagccgcaca aggtgcggat cgtctgggat gcggcggctg aagtcaacaa agtatcgttc      2820
     aattcggcct tgcttaaggg gccagatttg ctttctaatc ttgttttcgt cctgtaccac      2880
     ttccgagaac acagaatagc ggtgaccggt gatatagaag agatgtttct caggctcctc      2940
     attcgacccc aggatagcca atcgcaacgt ttcttgtgga gagaaaattc tagagacgcg      3000
     ccgtcagtat acgtaattga cgttgcaacc tttggatcaa cttgctcccc aagttcggcc      3060
     caattcgtga agaacacaaa cgcaaaagaa cacatggaaa cgttccctag agcagcgact      3120
     gcgatcatca agcatcacta tgtagatgat tacttggaca gctttgagac ggaagaagag      3180
     gcaatcgagg tagtcaatca agtaaagttc atccattcaa cgggaggttt caatttacgc      3240
     aactttctgt ccaactccga cgccgttttg ttagcaattg acggtgtctc acaagaagat      3300
     gccaagcagt tgagtctttc cagagctgag aaagtcgaat ccgtgcttgg aatgaaatgg      3360
     aatccctcca gggatgtttt cgtctatacc ttaactcctc gccaagacct cgtaaaaatt      3420
     attgagtctt cacacactcc aactaaacga gaaatgctca aactcgtcat gagtcttttt      3480
     gaccctctag gattcgtgac gttctaccta atccatggga gaactctcat tcaagacgtt      3540
     tgggcatcag gagttaattg ggacgaaccg gtcaacgatg aattgtgtca aagatggcga      3600
     caatggatca gcttcctacc gttgttgaac gatctaaaaa tccctcgatg ctattttcga      3660
     ggccaaatgg acgaactaaa acaattgcac gttttcgtgg atgccagcga cacagcctac      3720
     gcttgtgtgg cgtacctacg gtcgtctgga acgcaaggaa tagagttagc ccttgtgggt      3780
     gctaagagta aagtggcgcc gctaaaagtc ttgtccgtcc ctcgattaga gctcatgtct      3840
     gctgtgttgg gtgctcgtct ggcggagtct gtggttaccg cccattcttt caatgtagca      3900
     gaaactttcc tttggacgga ttctgccact gtcctagctt ggattaactc ggaccacagg      3960
     agataccata agtttgtagg tgtcagagtc ggagaaatcc tagctctaac aaaaatgaat      4020
     caatggagat gggtgcccag caaggagaat ccagcagatg atgcgacaaa gtggggtaac      4080
     ggtccgaaat ttgatcctgg cagtcgttgg ttcagcggac cgccctttct cgcccggtct      4140
     gaaacagagt ggccgcaaaa acgaaagggt gtcgtcacca gcgacgaact aatccattcg      4200
     ctcaactcac accaaataac tattcctcca ctaatcgata ctgcacgttt tcataaatgg      4260
     gagcgactat taagaacaca agcgtacgta tgcagattca tcaacaatct tcgttgtcgc      4320
     aggaacgggc aaatgacgga gactggaatc ctcaatcggg acgaactgaa gcgagcagaa      4380
     caagaactct ggaaacaggc tcaaatggaa gcgtacggtc aagagcgaaa aattttgctg      4440
     gaaactcgag gtacaccaga cgctcgtcat aactcagtac cgaaatccag cccaatctac      4500
     aaattgtggc cctacattga cttcgatggc gtggtccgga tgcgaggaag aataggtgcc      4560
     gcttggtact ctgctcttga tgcaaggtac ccaattatac taccaaaaac tcatcaaata      4620
     acgtcgcttc tagtggattc gtaccataga cgctatcatc atgccaacca tgagacagtc      4680
     gtgaatgaaa tacggcagcg ctttcaaatt ccaaacctac gctcgattgt taaacagacg      4740
     gcacgaaaat gcctcaaatg ccgtatagat catgctgtcc caagacctcc accaatggct      4800
     ccacttccag aagaacgtgt cactcctttc gtgaggccat tcacatttgt cggtctggac      4860
     tatttcgggc cgttgacggt gaaggttggc cgatccgaag tcaagcgctg ggtagcactc      4920
     ttcacgtgcc ttacggtgcg tgctatacac ctcgaagtag tgcacagcct atctagcgag      4980
     tcgtgtattc tagccattcg ccgatttatc gcccgtagag gaacacctgc tgagtttttt      5040
     agcgataatg gaaccagttt tgtgggcgct aacactcagt tgcggcgaga aattgcgact      5100
     aggaacggag tactagctag cacgtttacc aacaccaata cccgatggaa tttcaatcca      5160
     ccgggtgctc cacatatggg tggggtgtgg gagcgcttag tgcgttcggt taaagatgcc      5220
     gttggaactc tcatcgacac tcctcgccga ccgacggatg aggtgctcga aactgtacta      5280
     ttggacgcag agtcgatgat aaattcacgc cctttaacgt atataccgtt ggagaccgcc      5340
     gatgaagaat cattgacccc caaccacttt ttgatgggta gctcttccgg agtaaagcag      5400
     ccaccgtcgg aaatagaagc atgccgtaca aatttacggg gctactggaa tttagctcaa      5460
     catctaactg acatcatatg gaaaaggtgg atcaaagagt atctgccggt tatcactagg      5520
     cgtggcagat ggtttgaaga agtacgcgat gtccaagtag gcgatttggt gcttattgtc      5580
     gacactgcga taagaaacca gtatgtgaaa ggtagaatcg aacaggtatt tccgggacga      5640
     gatggacgcg tgcgtcaagc tttggtacgc acagccaacg ggacttatag aaggccggct      5700
     gtgaaactgg cgttgctaga cgtcggaata actggtaaag caggtcaaga ttgttcggat      5760
     caactgacca ggctttacgg gcgggagga                                        5789
//
ID   BEL-701_AA-LTR repbase;    DNA;    INV; 645 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-701_AA-I;
KW   BEL-701_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-645
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-645
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 350-350 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 645 BP; 195 A; 111 C; 122 G; 217 T; 0 other;
     tgttgcgacg cacagcaagc ccctcggccg aacggatcaa agtggttaca acagggcatc        60
     tgtataggat agggagtagg ccataacgta cctatcacaa acggagatga ggagaatttg       120
     atatgtcaaa tgcgatgatt agcagaattg agaagttgaa taattgagct gttttcttta       180
     gtggatttgg attgttaaaa tcattttttc taaaagttga attatatttt tatactatat       240
     tcccccacgg taagaaataa tgtgtctgta cctaaatatt tacttattat ttgcgttgat       300
     ttgaacttag gactagttgc accgagcgat tatattggcg ctgtcaattc gatcagattc       360
     actgttaatt accttttcat gaaaacaagt aagttctttt attgtttctc tgatataatg       420
     ccattgtata actgaaataa ctgtatatat tatagcccta aataggactc tttcgttgca       480
     ttagtgcgtt ataactagct agccttgcgg tagaacacta aaactgtaag ttagccttat       540
     tctttgtaat gatcccatct aataaaatga actcgttcta gcttaaagcg attaacaacc       600
     aactgctccg tgtttcgctc taaagatttg gtgattctcc gaaca                       645
//
ID   BEL-702_AA-I repbase;    DNA;    INV; 5873 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-702_;
KW   BEL-702_AA-I; BEL-702_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5873
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5873
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 412-412 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..5872
FT                 /product="BEL-702_AA-I_1p"
FT                 /translation="MMSDNEEDNSNLNATGYDCGLCDKPNHADQQMVYCDV
FT                 CKRWFHFSCVDVTDEVKDISWTCEACRNTTKSDTGYEKSEQWIANEMEQQK
FT                 ADEAHKHSLELMRQIKLRNFQRELERQEQTRIAELELEREMLKMKRMAEER
FT                 FQKRKEELSVEHDGSRAISIRGTGSRKAHENARDDRTLEDQTQNPVNQTQL
FT                 LHNADHRGAYPKNSTPVGIESQCNQPSGNPSRLNLSSLRCPPALGRTATQF
FT                 QLHNSHDASSDDCEFSNDDEYGEQHAEPRLSKAQLAARKGPFQKLPIFTGK
FT                 PEEWPLFYSSWCNSNKACNWSNLENLGRLQESIKGVALEAVRSRLLLPQTV
FT                 PAVIDTLKSLYGRPELLLQALVTKARKADPPRIDRLQTFIKFGVVVQQLSD
FT                 HLIAAGLRDHLVNPMLIQELVEKLPSTTKLEWVRYKRQQANVTLTTFADFL
FT                 SEIVADASEVTLFGEMQIEQSHRIGKDKREAKRKEKHPEGFLHTHISEADH
FT                 HQSSGSTTEDQMSKKLEKREESRKPCRICNRKDHRVRYCEEFSKLSWEQRM
FT                 EEVNRWKLCSICLNEHGQVRCRFKTKCNVGSCEERHHPLLHPPNKYRPVVP
FT                 VTADCNAHDLQMQKPILFRMVPVRLTNGERSVDVLAFLDEGASYSFVEKSV
FT                 AEIIKLDGVSQPILVKWTAGITRVERDSKVVQLTISGQESSEHFVLKNVHT
FT                 VDRLELPKQSLDYSTVAAKYRHLEGLPVLDYHNGTPKILIGLKHLHVYAPL
FT                 ESRIGNVGEPIAVRTHLGWTVYGPQESAESSACFGGHHDIRSPADNELHEL
FT                 LRSHYVLEDSGISVSMLPESAEDRRAKELLEKTTVRVGNRYETGLLWKQDH
FT                 PQLPDSYPMAIKRMKNLEKRLSKNPELQQNVSKQIEDYLEKGYAHKLTSQD
FT                 LEDAEPGKVWYLPLNVVLNPKKPSKIRLVWDAAAAVHGSSLNTALLKGPDL
FT                 LTNLPVVLYHFRERPIAFGGDIMEMYHQIRIRRSDKQSQRFLYRNDTSGPP
FT                 QIYVMDVATFGSTSSPCSAQYVKNKNAREYANQFPDAVDAIIHKHYVDDYL
FT                 DSTDDVDQAVKRALEVRLIHSKAGFHIRGWVSNSSVFLDKLGEPRSEQLVH
FT                 FSSKATSTERVLGVAWNPREDVFQFSTRLRSELEPFISGNLRPTKRQVSSC
FT                 VMSFFDPHGYLSPLTIHGRLIIQDLWRSGCAWDDMIDDESAYKWKRWTAAM
FT                 PTIEALKIPRCYFSSICSLDHETLQLHIFTDASENAYGCVAYLRAVVDGLP
FT                 RTALVASKAKVAPLQHLSIPRLELLAAVLGARFSQSIKVGHSIPIGKTVLW
FT                 TDSRTVLGWIQSDHRKYKQFVAFRIGEILTHTNIDDWRWIPSKMNAADVLT
FT                 KWKSYAPLDPKGEYVTGPEFLYRREENWPSYEMVEPNPKEELRAVHLFHEI
FT                 VLPQVVIDTARFSSWKTLIRSVICVFRFIANCRKKKLGERITAVPATKKLL
FT                 RIVKRPLAGVVTPYTQPEYSRAENVLWKAAQQEVFGDELKTLVKNRDLPAE
FT                 RRHHLERCSPLFKLSPLLDENNIIRMEGRSAHAEFIPFEMRFPIVLPKHHD
FT                 ITKKLLLYYHQKFGHANRETVVNEVRQRFHIPNLRAAVLQISKDCAWCKIR
FT                 KCHPTTPRMAPLPNQRLCPRMRPFSFVGIDYFGPVIVTVGRRTEKRWVALM
FT                 TCLTTRAIHMEVAHSLTSQACIMAIRRFMCRRGVPLEFFSDNGTNFQAVSK
FT                 EFGMVGRQIDIECADAFTDARTQWNFNPPSAPHMGGSWERLVRSAKVVMKA
FT                 FEDGGRLTDEILLTVLAETEEIINSRPLTYVPQESAEVEALTPNHFLRGFP
FT                 SDERKFQHYVTDTAAALRDEYIRSQQLADVIWERWVKEYIPTINQRSKWFG
FT                 ESKPIEVGDLVYITDGDNRRTWVRGRVERLIPGKDGRVRQALVRTNRKILR
FT                 RAVTKLAVMELEGKSGQTLEAGPELRAGE"
XX
SQ   Sequence 5873 BP; 1739 A; 1291 C; 1458 G; 1385 T; 0 other;
     aactcaaaaa taaatgatga gtgataacga ggaagataat tctaacctca atgccaccgg        60
     ctatgactgt ggactatgtg ataagccgaa tcatgcagac cagcagatgg tttactgcga       120
     tgtctgtaag cgctggttcc acttctcgtg cgtggacgtt acagacgagg tcaaggatat       180
     ttcgtggacc tgtgaggcat gcagaaatac tacaaagagc gacacaggat acgagaaaag       240
     tgaacagtgg atagctaacg aaatggagca acaaaaggcc gatgaagccc ataaacatag       300
     tctggagctg atgaggcaaa tcaagctacg aaattttcaa cgggagttag agcgccaaga       360
     acagacgcgt attgcggaac tagagctaga acgagagatg ctaaagatga agaggatggc       420
     cgaagaaagg tttcagaaaa ggaaagagga attgtccgtg gaacacgatg gatcgagagc       480
     tatttccatt agaggtacag gaagcagaaa ggcgcacgaa aatgctagag atgacaggac       540
     gttggaggat caaacgcaaa atccagtgaa tcaaacacag ctattacata acgctgatca       600
     ccgaggcgct tatccgaaaa attctacccc tgttggcatt gaatcgcaat gcaaccaacc       660
     atcgggcaat ccatccagat tgaatctatc ttcacttaga tgtccaccgg cgcttggtag       720
     aaccgcaact caattccagt tgcacaacag tcatgatgct tcaagtgatg actgtgaatt       780
     tagcaacgac gatgaatatg gggaacaaca tgcagaacca cgattgtcga aggctcaact       840
     cgcagctcgg aaaggaccgt tccagaagtt accgatattt actggcaagc cagaagagtg       900
     gccattgttt tacagcagtt ggtgtaatag caacaaagcc tgtaactggt cgaatttgga       960
     gaatcttggc agattgcagg aaagtataaa aggagtcgca ttagaagcag taagaagcag      1020
     attgctgctt ccacaaaccg tgccagctgt tattgataca ttgaagagtc tatacggcag      1080
     accggagctc cttcttcagg cattggtgac aaaggctaga aaggcggatc ctccacgaat      1140
     cgatcgactt caaacgttca tcaaatttgg cgtcgttgta cagcaactaa gcgatcatct      1200
     gattgctgcg ggcctccggg atcatttggt caaccccatg ttgattcaag agctagtgga      1260
     aaaattaccg tccaccacta agctcgagtg ggtacgttac aaacgccagc aggctaacgt      1320
     gacgttaact acctttgcgg attttctgtc agaaatagta gccgatgcta gtgaagtgac      1380
     gcttttcgga gagatgcaaa tagaacagag ccatcgaatc ggaaaggata agcgagaagc      1440
     gaagcgaaag gagaaacacc cggaagggtt cctgcacacc cacatcagtg aagcagatca      1500
     tcaccaatca agcggatcaa cgacagagga ccagatgagc aaaaagctag agaagcgaga      1560
     agaaagccgc aaaccgtgcc gtatttgcaa tcgaaaagat catcgagtaa gatattgcga      1620
     agaattcagc aaactttcat gggaacagcg aatggaagaa gtaaaccggt ggaaattgtg      1680
     cagtatttgt ctcaacgaac atggacaggt gcgatgtcgt ttcaaaacca aatgtaatgt      1740
     tggatcgtgt gaagagcgtc accacccatt gctccaccct ccaaacaaat atcgcccggt      1800
     tgtgccggta acagctgatt gtaacgctca cgatttgcag atgcagaaac ctattctgtt      1860
     tcgaatggta ccggttaggc tgacaaacgg cgaacgatca gtggatgtac tcgcctttct      1920
     tgatgaaggt gcctcctact cattcgtgga gaaatcagta gcggagatca ttaagctaga      1980
     tggagtatcc cagccaattc ttgtaaaatg gacagcagga attacacgag tggaacgtga      2040
     ttccaaagta gttcaactaa cgatttcagg acaagagtcg agcgagcatt tcgttctgaa      2100
     aaacgtacac accgttgatc gactggagct gcctaagcag tctttagatt attctactgt      2160
     tgcagctaaa tatcgccact tggaaggtct tccagtgttg gattatcaca acggcacgcc      2220
     caaaatatta attggactga aacatctaca tgtctatgca ccattggagt cacgaatcgg      2280
     caatgttggt gagccaattg ctgtccgcac acaccttggt tggacggttt atggtccaca      2340
     agaaagcgct gaatcgtcag catgttttgg aggacatcac gatattagaa gtccagcaga      2400
     taacgagctg cacgaattac ttcgaagtca ctacgtgcta gaggattcag ggatatccgt      2460
     ttcaatgttg ccagaatcag cagaagatcg tcgtgcaaaa gaactgctgg agaagacaac      2520
     tgttcgcgtt ggaaaccggt atgaaactgg tttgctgtgg aagcaggacc atccgcaact      2580
     tccggatagt tatcctatgg cgattaagcg gatgaagaat cttgaaaaaa ggctgtccaa      2640
     gaatcccgaa ctgcagcaaa acgtttccaa gcaaattgaa gattatttag aaaaagggta      2700
     tgcacataaa ctgacttcac aggatttgga ggatgccgag cccggaaagg tatggtacct      2760
     tccattgaac gtggtgctta atccaaagaa accttctaaa atacgcctgg tttgggacgc      2820
     ggcagcagct gtacacggat cgtcgttgaa tacagcatta cttaaaggcc cggacctgtt      2880
     gaccaatctt cctgtcgtgc tgtaccattt ccgtgagcgg ccaattgcct ttggaggtga      2940
     tattatggaa atgtatcacc agattcgaat aagaagaagc gacaagcaat cccaacggtt      3000
     tctgtatcgc aacgatacat ccggtccgcc tcaaatttac gtaatggacg tggcgacatt      3060
     tggatcgaca tcgtcgccat gctcggcgca gtacgtcaaa aataagaatg cacgagaata      3120
     cgctaatcag ttcccggatg cagtcgatgc gattatccac aaacattatg tcgacgatta      3180
     tttagatagc accgacgatg ttgaccaagc agttaaacga gcactggaag tgagactgat      3240
     tcattcaaaa gcaggatttc acatccgcgg ctgggtctcg aactcttcag tattcctcga      3300
     taaattaggt gaacccagat cggagcagct cgtacacttc agttccaaag ccacatcaac      3360
     ggaaagagtg ctcggagtcg cttggaatcc gcgggaagac gtgttccagt tttcaaccag      3420
     attacgaagc gaacttgaac cgtttatctc cggtaacttg cggcctacaa aacgtcaagt      3480
     ctccagttgc gtcatgagtt tttttgaccc gcatggctac ctatcaccgc taacaatcca      3540
     tggacggctt ataattcagg atttgtggcg ttccggatgc gcgtgggatg atatgatcga      3600
     cgatgagtcc gcttacaaat ggaagcgatg gaccgcagca atgccaacga tcgaggcttt      3660
     gaaaatccct cgctgctatt tttcttccat atgttctctt gatcacgaaa cgctacaact      3720
     gcacattttc acagatgcaa gtgaaaacgc ctatggttgt gttgcttatc tccgtgcggt      3780
     ggttgacggc cttcccagga ctgcgttagt agcctctaaa gcaaaggttg ctccattgca      3840
     acatctttct atccctaggc tagaattgtt ggcagcggtt cttggcgcca gattttcgca      3900
     gtctataaaa gtaggccact cgattccgat tggaaaaact gtgctttgga ccgactctcg      3960
     aactgtgctc ggttggattc aatcggatca cagaaaatat aaacagtttg tggcttttcg      4020
     tataggcgag atactcaccc acacgaatat cgacgattgg cgctggattc ctagtaaaat      4080
     gaatgccgct gatgtactga cgaaatggaa gtcttatgca cccttggacc caaaaggtga      4140
     atatgtaact ggtccagaat ttttgtatcg ccgggaggaa aattggccgt cctatgaaat      4200
     ggtggaaccg aacccgaagg aagagcttcg cgccgttcat ctgtttcacg aaattgttct      4260
     gccacaagtg gttatcgata ctgctcgctt ttcgtcttgg aaaactttga ttagatcggt      4320
     tatctgcgtt tttcgtttta ttgcaaactg ccgtaaaaag aagttgggtg aaaggattac      4380
     agctgtacca gccacaaaaa aactactgag gatcgtcaaa cgtccactgg caggtgttgt      4440
     gacgccctac acacagccag aatactctcg tgctgaaaat gttctgtgga aagcggccca      4500
     gcaagaagtg tttggagatg agttaaaaac actggtcaaa aatcgtgacc ttccagccga      4560
     aaggagacat cacttagaac gttgcagtcc tctgttcaaa ctatcgccgc tattagacga      4620
     aaacaatatt ataaggatgg aaggacggtc cgctcatgca gagtttattc cattcgaaat      4680
     gagattccca atcgtgctac caaaacacca cgatataacg aaaaagttgc tgttgtacta      4740
     ccaccaaaag tttggacacg ctaatcgtga aacagtggtg aatgaggttc gccaacgctt      4800
     tcatattcca aatttacgtg cggcggttct acaaatctcc aaagattgcg cttggtgcaa      4860
     aattcgtaaa tgtcacccca cgacccctag gatggcgcca ctacctaatc aacgactttg      4920
     tccaagaatg cgtccgttta gcttcgtcgg catcgattac ttcggcccgg tcatcgtaac      4980
     cgtcggaagg cgtactgaaa agcggtgggt agcactaatg acttgcttga ccaccagggc      5040
     tatccacatg gaggtggcac atagtctcac aagccaagcg tgcatcatgg ctattcgcag      5100
     gttcatgtgc cgtagaggag tacccctgga gtttttctca gataacggga ctaactttca      5160
     ggccgttagt aaggagtttg gaatggttgg acgacagatt gacatcgagt gtgcggacgc      5220
     cttcactgat gcgcgtaccc aatggaattt taacccacca tcagcccccc acatgggtgg      5280
     gagctgggaa cgtttggtaa gatcagcaaa agtggtaatg aaggctttcg aggatggcgg      5340
     acgactgacc gacgaaattt tgttgactgt gctagccgaa accgaggaaa taataaactc      5400
     tcggccatta acttatgtac cccaagagtc tgccgaggta gaggcattaa cccctaacca      5460
     cttccttcgg ggatttcctt cagatgaacg gaagttccaa cattatgtaa cggatactgc      5520
     agcagctcta agggacgaat acataagatc gcaacaactg gcagacgtga tatgggagag      5580
     atgggttaaa gaatatatac ccactattaa tcagcgcagt aagtggtttg gagagagcaa      5640
     accgattgag gtaggagact tggtttacat caccgacgga gataaccgga gaacatgggt      5700
     tcgtggtaga gtcgagcgat taattcctgg aaaagacggt cgtgtacgtc aggctctagt      5760
     taggactaat aggaaaattc ttcgcagggc tgtgaccaag ctagcggtga tggaactcga      5820
     aggtaaatct ggccaaacac tcgaggctgg accagagtta cgggcggggg aat             5873
//
ID   BEL-702_AA-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-702_AA-I;
KW   BEL-702_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-444
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-444
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 351-351 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 444 BP; 153 A; 65 C; 86 G; 140 T; 0 other;
     tgatggcacc actgcgctca acaactgggt tttctgctgc gaagtgacat ccgagatgac        60
     aggttatatg acagattatg aaaaagaaag ggaattggaa gtgatcttga aagcgtgcta       120
     gattatattt tcattatttg agtgaattcg ctactttatt gatctaaata actattatca       180
     acgatttgta agtaatataa tcaaccgcat ttacttttgt aacactaacg gaatgaattc       240
     ttaggttcta agcgaaatag agcgcaaatt tattgttcgg aattggaaga ggaaaaagaa       300
     aaccatttat gtgagtggta aaaatatatt gaaatcgatc cactaactaa caaattgttc       360
     taataaaatg ctttactttt agttttgagc tacactgtaa aaggttgctg caaaaaagga       420
     gttttgcttt cactcgtccg aaca                                              444
//
ID   BEL-703_AA-I repbase;    DNA;    INV; 5897 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-703_;
KW   BEL-703_AA-I; BEL-703_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5897
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5897
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 413-413 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5895
FT                 /product="BEL-703_AA-I_1p"
FT                 /translation="MDQQLDLTTTPCGECEEVSTQNEPMIACDGCDRWFHL
FT                 RCVGLSTAPKKDKKWYCKAPTCQAVFQEYQKQKKIARTKKPAAATGDSDNH
FT                 SSVSERNAVALPAPVQEKLIAMEAEKKRLEEEMDAELLLREKEMEMKNALK
FT                 ARRLLLEQRLREKELAEERALRQREIEEKEMQLQQELQEKEDHLTRMKEME
FT                 KKCRERMSAVDKRLQKAEIVDKKGKKHPSEAIAKREGVPGPSQPSLVRKLT
FT                 QANLKLLAEQGDDTSDEEXDEEXDEDKSSSTSSGGDSSTSKKNGTEIDSAS
FT                 XQGRPRIGPTRAQLAARNGLTRKLPVFSGKPEEWPLFFGAYQASNEACGYS
FT                 DVENLVRLQDSLKGSALEAVRGQLLLPKSVPRVIAKLRQLYGRPEQLLQSH
FT                 LDKVRRLDPPRADKLASFIPFGNAVEQLCEHLEAAGLTLHLVNPILIQDLV
FT                 AKLPDGEKRQWVQYKKKKKVVTLRTFTDFVAGIVSDACEANVSFDYKPDTR
FT                 TTAGAAGRSKPKEKSALYTHSEVNRSTVNMTERKKQKPCRVCQREDHRLRF
FT                 CQDFRDLPYADRMKIVAKWKLCKTCLNEHNGSCRFKIRCDVGDCREAHNPL
FT                 LHPITNTVGMSAHIRDTSSMMFRIIPVQIHCGETSLIVLAFLDEGASVTLI
FT                 ENDLADRLGLTGVKEKLTINWTSDVYRVEKNSRLMNLWTSAVGTENPEKFL
FT                 LHTVNTVEKLMLPHQKLDAAELVAQYEHMRDLPIASYDGRPGVLIGLNNIH
FT                 TFAPLEARIGTTREPIAVRCKLGWTVYGPRQVNSTSASGFLGFHQAVSNEE
FT                 LHDILKSHYALEESVVKVQRESAEDQRARSIMEHTTKRVGNRFETGLLWAA
FT                 DEVCLPDSYPMALKRMKQLERKLERSPELYNNVRRQIAEYQAKGYAHLATE
FT                 EELSCTERGKVWYLPLNVVVNSKKPGKVRLVWDAAAPVQGVSLNSRLLKGP
FT                 DLLVPLVTVIVGFRERRIAFGGDIREMYHQLKIISGDKQAQRFLFRNDASE
FT                 TPKVYVMDVATFGSTCSPASAQFIKNLNATEHAIQFPEAAAAIIGRHYVDD
FT                 YFDSVDTIEEAVVRAKQVRYIHDQAGFEIRNWVSNSPEVLSALGEDKSSGP
FT                 VTFQQDKQSSGERVLGVFWDTNLDVFAFSVTHRTDIKRYLYDGVRPSKRIV
FT                 LSCVMGLFDPLGLLSPYTIHGKVIIQHLWRNGCDWDQEIDEQSWRLWKQWT
FT                 ELLPDVEALRIPRCYLGDAASSSIESLEVHIFTDASEHAYGCVAYLRSVID
FT                 GAVKCSLVLSRAKVAPLKRQSIPRLELMAAVLGARMRQTVMNTHSLQIDRT
FT                 VLWTDSRTVLSWLHSDQHKYKQFVAFRVGEILELTQMRAWRWVPTKQNIAD
FT                 VLTKWGRGPPLQNDSEWVQGPSILFQPSDQWPSNESVEETDEEARGVLLFH
FT                 AVVEAETVSSWIKLLRVAATVVRFISNCQRKRAGLPIMAIPATERLRRMVK
FT                 AEYSAETKPLQREELQSAETILWKQAQFDGFPEEMNTLTKNLQRNPGQPTE
FT                 KLERSSCLYKHSPVLDEDGVLRVRGRLEKNEQLPFDKRFPIILPGNHDITK
FT                 KLILHYHSKFGHANRETVFNELRQKFWILKARSAIRQATKECIWCKVNRCQ
FT                 PAVPMMAPLPVQRSTPHLRPFSSVGVDYLGPVEVTVGRRKEKRWVAVFTCM
FT                 AVRAVHXDVVHSLSTQSCLMAIRRFACKRGAPEQIFSDNATCFRGASAAMI
FT                 QAIKKINIECAEKVTSTVTAWHFNPPGTPHMGGVWERMVRSVKEALRALDD
FT                 GRKLTDEILSTSLAEAEDMINTRPLTYVPQEAADEEAITPNHFIRGTVTGA
FT                 DMLLDDAVDLAASLTDVYKRSVYLANRMWERWLKEYLPSLNHRAKWLEDTK
FT                 PLKVGDLVFVVEGKNRKNWVRGRIQEVIQGADGRIRQADVKTADGKVHRRA
FT                 VVNLAVLEIEAGKSGTSGRNTGCYGQG"
XX
SQ   Sequence 5897 BP; 1525 A; 1470 C; 1758 G; 1140 T; 4 other;
     atctcaaaaa tcaaataacg agattcggta ccctccatca cgatggatca gcagctggac        60
     ctaaccacaa cgccttgtgg agaatgcgaa gaagtttcca cccagaatga gccgatgatt       120
     gcctgcgacg gctgtgaccg gtggtttcac ctacgttgcg tgggactatc aacggcgccg       180
     aagaaggaca agaaatggta ctgcaaggcc ccgacttgcc aagccgtgtt ccaggagtac       240
     cagaagcaga aaaaaatagc gcgcaccaaa aaacctgcgg cggctacggg agattccgat       300
     aaccacagtt ctgtgtcgga acgaaacgcg gtagcactac ccgcgcccgt gcaggaaaaa       360
     ttgatagcga tggaagcgga aaagaaacgc ctagaggagg aaatggatgc ggagctgctg       420
     ctgcgagaaa aggagatgga gatgaaaaac gcactcaaag caagaagatt gctcctggag       480
     cagagactgc gtgagaaaga gctagctgag gagcgggccc tgcgccagcg ggaaattgaa       540
     gagaaggaga tgcaactgca gcaggaattg caggaaaaag aagaccacct gacccgcatg       600
     aaggaaatgg agaagaagtg ccgtgagcgg atgtctgccg tcgacaagcg gctgcagaaa       660
     gcggaaatcg tcgacaagaa aggaaagaag catccatcgg aagcgatcgc aaagcgagag       720
     ggagttcctg gtccatctca accgtcgctt gttcgcaaac tgacacaagc gaacctgaag       780
     cttctcgcgg aacagggaga cgacaccagc gacgaagagg wggacgaaga agawgatgaa       840
     gataaaagca gctcgaccag ctccggtggg gactcgtcga cgagtaagaa gaacggaacg       900
     gagatcgaca gtgcgtctca scaaggacgg ccgcgtattg ggccaacaag ggctcaacta       960
     gctgcgcgga atgggctgac gaggaagctt ccggtcttct caggtaagcc agaagagtgg      1020
     cctttgttct ttggagctta ccaagcgtcg aacgaagcct gcggctattc tgacgtagaa      1080
     aatctggtaa gactccaaga cagcctgaaa ggctcagcgc ttgaggcggt tcgtggtcag      1140
     cttctgctcc caaagtcggt tcctcgagtg atcgcgaaac tccgccagct ctacggacgg      1200
     cccgaacaac ttcttcagag ccacctggac aaggttcgcc gactggatcc gccaagagcc      1260
     gacaagttgg ccagcttcat ccctttcgga aacgctgtag aacagctctg cgagcatcta      1320
     gaggcggcgg gactgacact ccacctggtg aacccgattt tgatccagga cctggtcgcc      1380
     aagctcccgg acggagaaaa gcggcagtgg gtgcagtaca aaaagaagaa gaaggtagtg      1440
     actctgcgaa cgttcacgga tttcgtcgcg ggaatcgtgt cagacgcttg tgaggcaaac      1500
     gtcagcttcg attacaagcc tgatactagg accactgcag gagcggccgg aagaagcaag      1560
     ccgaaggaga aaagtgcact gtatacccac agcgaagtga accgttcgac cgtcaacatg      1620
     accgagcgca aaaagcagaa gccgtgccgg gtgtgtcaac gagaagatca tcgtttgcgg      1680
     ttctgtcaag acttccggga cctgccctac gcggatcgaa tgaaaatcgt cgccaagtgg      1740
     aagttgtgta agacctgcct gaatgagcac aacggatcgt gtcggttcaa gattcgctgc      1800
     gacgtgggtg actgcaggga agcgcacaat ccgctacttc atccgatcac caatacggtc      1860
     ggtatgagcg cacacatcag ggacaccagc tcgatgatgt tccggataat tccggtgcag      1920
     attcattgcg gagaaacgtc gctaattgtc ctcgctttcc tcgatgaggg agcctccgtg      1980
     acgcttatcg agaacgactt ggccgaccgg ctgggactca caggagtgaa ggagaagctc      2040
     accatcaact ggacatctga cgtctatcgc gtggagaaga actcaaggct gatgaacttg      2100
     tggacctctg cagtgggcac ggaaaatccg gagaagtttc tgctgcatac cgtcaacacc      2160
     gtcgagaaac tgatgctacc ccaccagaag ctggacgctg ctgaattggt ggcgcagtac      2220
     gagcacatgc gtgacctgcc gattgcatcg tacgacggcc ggccaggagt tttgatcgga      2280
     ctgaacaaca tccatacgtt tgctccgttg gaagcgagga ttggaactac cagggagcca      2340
     atcgcggtgc gctgcaagct tggttggact gtctacggtc ctcgccaagt gaactcgact      2400
     tcggcgagcg ggtttctagg gttccaccaa gcagtgtcca acgaagaact ccacgatatc      2460
     ctgaagagcc actatgcgct agaagaatcg gtagtcaagg tgcagcggga gtcagccgaa      2520
     gaccaacgag ctcggtcgat tatggagcat actacgaaac gcgtaggaaa tcgcttcgaa      2580
     acgggactac tctgggcggc ggacgaggtt tgccttccgg acagttaccc catggcgctg      2640
     aagcgcatga agcagctgga gagaaagttg gagagatcgc cggagttgta caacaacgtt      2700
     cggcggcaaa tcgccgaata ccaagcgaaa ggatacgctc atctagcgac tgaagaggag      2760
     ctgtcctgta ccgaacgagg gaaagtctgg taccttccgc tgaatgtcgt cgtgaactcc      2820
     aagaagcccg gaaaggttcg gctcgtctgg gacgccgcgg cacccgttca aggagtttcg      2880
     ctgaattccc ggttgcttaa ggggcccgat ctgctcgtgc cgctggtgac agtgatcgtc      2940
     ggattccgcg agcgaagaat cgccttcggt ggagacatca gagaaatgta ccaccaactg      3000
     aagattattt ccggggacaa gcaagcccaa cgcttcctct tccggaacga cgccagtgaa      3060
     acgccgaaag tttacgtcat ggacgtcgcc acatttggct caacgtgctc gccggcgtct      3120
     gcacaattca tcaagaatct caacgcgacc gagcatgcaa tccagtttcc cgaggcagca      3180
     gcggcgatca tcggtcggca ctacgtcgac gactactttg acagtgtcga cacgattgaa      3240
     gaagcagtag tacgagcgaa gcaggtgcga tacatccacg atcaagccgg gtttgaaatt      3300
     cgcaactggg tgtcgaactc gccggaagtt ctctcagctc tgggagaaga caaatcatcc      3360
     ggaccggtga ctttccagca ggacaaacag tcgtctgggg agcgcgtgct cggagtattc      3420
     tgggatacga acctagatgt cttcgccttt tccgttacac accgaacgga tatcaagcgg      3480
     tacttgtacg acggcgtgcg tccgtcgaaa cggatcgtct tgagctgtgt gatgggtctt      3540
     tttgaccccc tgggtctctt gtcgccgtac acgatccacg gtaaggtgat catccagcat      3600
     ctctggcgaa acggctgcga ttgggatcaa gaaatcgacg agcaaagttg gcgtttgtgg      3660
     aaacagtgga ccgagttgct gcctgacgtg gaagccttgc ggattcctcg gtgctacctg      3720
     ggagacgcgg cgtcgtcttc aatagaatct ctcgaggttc acattttcac cgatgcgagc      3780
     gagcacgcct acggctgcgt ggcgtatcta cgatcggtca ttgatggagc ggtgaagtgt      3840
     agcttggtcc tgtcccgggc gaaggtggcg ccacttaagc ggcagtcaat tcctcgtcta      3900
     gagctgatgg ccgccgtact tggagcgcga atgaggcaga cggtcatgaa tacacactcc      3960
     ctgcaaatcg accgcacagt tctctggacg gattctcgta ctgtattgtc ctggctgcac      4020
     tcggaccaac ataagtacaa gcagttcgtc gcattcagag tgggtgaaat tttggagttg      4080
     acccagatgc gggcctggag atgggtgcca acgaagcaga acattgcgga cgtgcttacc      4140
     aagtggggcc ggggtcctcc gctacaaaac gactcggaat gggttcaggg tccgtcaatt      4200
     ctgttccaac cgagcgatca gtggccgtct aacgaatcag ttgaagaaac ggacgaggaa      4260
     gcgagaggag tgctgctgtt tcatgcggtg gtggaagctg aaaccgtgtc gagctggata      4320
     aagctactgc gtgtggcggc aacagtagtg cgcttcatct ctaactgtca gcgtaaaaga      4380
     gccgggttgc cgatcatggc tattccagcc acggagcgcc tgcgtcgaat ggtcaaggct      4440
     gaatattcgg ctgaaacgaa gccacttcaa cgagaggagc tgcagtcggc agaaaccatt      4500
     ctgtggaagc aggctcagtt cgatggtttc ccggaggaga tgaatacgct gacgaaaaat      4560
     cttcagcgga atcctggtca accaacggaa aagcttgaaa ggtccagttg tctgtacaag      4620
     cactcaccgg tattagacga agacggagtc ctgagagttc gcggcaggtt ggagaaaaat      4680
     gagcagctgc ccttcgataa gaggttccca atcatcctac cggggaacca cgacatcacc      4740
     aagaagctga tcctgcatta ccacagcaag tttggccacg cgaacaggga gaccgtgttc      4800
     aacgaattgc ggcagaagtt ctggatcttg aaggcgcgct ctgctatccg gcaggcgacg      4860
     aaggagtgca tttggtgcaa ggtaaaccgc tgccaaccgg ccgtccctat gatggcacca      4920
     cttccggttc aacgatccac gcctcactta cgtcctttca gttcggtggg cgtagattac      4980
     cttggtccgg ttgaagtcac ggtgggacgc aggaaggaaa agaggtgggt cgccgtattt      5040
     acttgtatgg ccgtgcgagc cgtacattts gacgtggttc acagtctgag cacacagtcc      5100
     tgcctaatgg cgatcaggag gttcgcctgc aaacgtggag ctccagaaca aatcttctcg      5160
     gacaatgcta cctgtttccg tggagcgagt gctgcgatga tccaggcgat caagaagatc      5220
     aacatcgagt gcgctgaaaa ggtgacttca acagttactg cttggcactt caaccctccc      5280
     ggcactccac acatgggtgg tgtctgggag aggatggtgc ggtccgtcaa agaggcgctt      5340
     cgagcgcttg atgatggacg gaaacttacg gacgaaattc tgtcaacgag cctagccgaa      5400
     gctgaagaca tgatcaacac gcggccgttg acatacgttc cacaagaagc ggcggacgaa      5460
     gaagcgatta cgccaaacca tttcatccgt ggaacagtga caggtgcgga catgctgctg      5520
     gacgacgctg tggatttggc tgcatccttg acggacgtct acaagcgatc ggtatatttg      5580
     gccaaccgga tgtgggaacg atggctgaag gaatacttgc cgtcgctgaa tcatcgtgca      5640
     aagtggctcg aggacacgaa gcccctgaaa gtcggagacc tagtgttcgt agtcgaaggg      5700
     aagaacagga agaactgggt gcgaggaagg attcaggagg tcatccaagg agctgatgga      5760
     aggattcgcc aagcggacgt caagacggcg gacggtaaag tacatcggcg agccgtggtg      5820
     aatctagcgg tgttggagat agaggcaggt aaatccggaa cttccggaag aaataccgga      5880
     tgttacgggc aggggat                                                     5897
//
ID   BEL-703_AA-LTR repbase;    DNA;    INV; 627 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-703_AA-I;
KW   BEL-703_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-627
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-627
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 352-352 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 627 BP; 231 A; 89 C; 149 G; 158 T; 0 other;
     tgttcacacc gctgggcagt agtggtcggt tgtcggcata atagccgaac cctccgcaag        60
     tgacagtttg gcgagagtgg aggacggaag caaaccgcga gaaaaagatt gcaaaaacaa       120
     aaacaaagat cgcatttgag aaagtgagga gtgatttgga tatttctttc gtttattaat       180
     acgtgtaagc aagcaaggag tgtaatttat ggaatttatt gccaaaataa tcgcctagat       240
     tacctgtaag taaaataaaa gtgaattaga ttatggttaa gaaaataacg caaaaatata       300
     cttacccagc ttgtaccaca cgagagtcga agaagaattg taaccgtagc atcgcgctgc       360
     tttgtacggt tgatgttgta agtacctgaa acgaaaataa gagaaaatga attaattgat       420
     gtttaaatat gtaggaagag gagataacgg aagtagcaaa aggatccgga aggaagttat       480
     atcgtaaggc aggaggaaaa ctatttgagt gagtagttgg cgtaaaatgt agatttagtc       540
     atagctgaaa actaatgtaa ataaacttta ttacagtttt tgagctgctc cgaaaagctg       600
     ctgcaaaata aataacgtac ccgaaca                                           627
//
ID   BEL-704_AA-I repbase;    DNA;    INV; 5946 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-704_;
KW   BEL-704_AA-I; BEL-704_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5946
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5946
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 414-414 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           18..5945
FT                 /product="BEL-704_AA-I_1p"
FT                 /translation="MSRPSQDPERTGFNCAGCHRPDDDESEMVFCDHCQRW
FT                 YHFGCAGVSADVRDVSWSCEECLRLLADKEGPPGLEEELKKLEQEMEKERQ
FT                 AIELEKILHKKRLEHQKKLFLLRQQAEKEKRDMELAYEQEQMELQVAEEEA
FT                 HRKKRDEMLRQMQAKLENVKVDLARKEVAERERGAFGAVNGESREEWKSKQ
FT                 AKSGMEKPDEDEPEKRKSSKSNRKTAEPMKADREDYRGAFSKFSTPKASGV
FT                 APPVLQDLTSLPAVSDKRTPLGHPALQKKKKKQFVEVEEEAQGLYPANETS
FT                 EEEESEDSDSEEESSSQEEDFGMRPEIVMRGPTKAQLSARQFLSKKLPTFT
FT                 GRLEEWPMFISAYETSTKACGFSNVENLARLQECLKGQALDAVRSRLLLPS
FT                 AVPQIIKTLRMLYGRPEQLLNMLLSNVRKAPSPKGDKLATFIQFGVVVQQL
FT                 TDHLEATGLTAHLINPMLIQELTEKLPASTQLEWVRYRRKAQVVTLRTLSN
FT                 FLSRIVKDASEITPYSESAPVASDQAFRKKKGRNEQAGFLHTHNVEDSGAV
FT                 HQVPQREKKPCRICGRCDHRIRNCDTFKRLRLSERWEAVRKWKLCYLCLNE
FT                 HGSARCKLNFRCNVNQCNERHNPLLHFDQTVSTNCNVHLHRQSVIFRMIPI
FT                 TVYNGKLAVDTIAFLDEGSSYTLLEKSLAIALQARGVTQPLRVTWTAGVSR
FT                 VEKDSQKVEIFVSARGSTQRFRIKAAHTVESLKLPQQTVAMSEVVNGHPHL
FT                 RGLPVAEFHRGVPQILIGLKDIHLYAPLESRIGKPDEPIAVRSKLGWTIYG
FT                 PTCASRAESGIVGHHNCETVSNQELHDMLRSHYTLEESVISVAMLPESEED
FT                 KRAKAILSNATVRIGDRFETGLLWKEDEVRFPDSYPMVMKRFRCLERRLAK
FT                 DDQLCKKVSELINDYAMKGYIHVATEGELRQFEPEEVWYLPISVVVHPKKP
FT                 GKVRLVWDAAAAVNGVSLNSKLLKGPDMLTPLPNVLAKFRERVVGFGGDIR
FT                 EMYLQVRVRAADKRARFVFRNSASEEMKIYIIDVTMFGATSSPCTAQFVKN
FT                 RNAEEYAGQFPEAARAIVENHYVDDYFDSTDTVEEAVKRAQEVKFVHSKGG
FT                 FEIRNWVSNSEEFLHGIGERTPDQSLQILQDKESNLERVLGIVWNPVSDEF
FT                 TFLAKLREDLVPFFSGDRRPTKRVVMSSVMSLFDPLGMLATFVIHGKMLIQ
FT                 DLWRSGSDWDQPIDDESCEKWDRWIARLPEIEHVKIPRYYFHGSRSVDYDT
FT                 LQLHVLVDASQDAYGAAAYFRVLTSDGPACFLVMARSKVAPLKMMSIPRLE
FT                 LQAAVIGARLLQTVVEAHSLDIKERFIWSDSRTVVSWIHSEQRRYKPFVAF
FT                 RIGEILSLTKHSEWRWISTRSNIADDLTKWKSGSSLDSNGPWFRGPSFLYQ
FT                 PEERWTNQEAVEANTPEEVRACHLLHDISIVEPMVDVSRISRWKVLVRAVA
FT                 CVYRFISNCDRKSKGLAIEAVPATPRVRSLVKRTIPAVAVPLKREEHQRAE
FT                 AYLWRSAQVDSYEEEVKTMVKNREVPRSEWQPIEKCSSLYSDSPFLDDDGV
FT                 LRMEGRAAQGSFLPFELRFPVILPKKHPITRKLLEYYHQQAAHANSETVVN
FT                 EVRQRFRIPNLRAELKAVVKACLWCRTRKCAPKVPRMAPLPLARITPGWRP
FT                 FSFTGVDYCGPIMVTVGRRSEKRWICLFTCLTTRAIHLEVAHSLTTQACLM
FT                 AIRRFVCRRGKPVEFYSDNGTNFQGASKELIQKIDGECEEAMTDARTRWNF
FT                 NPPSAPHMGGVWERLVRSVKAALAVLNDGRRLTDEVLLTTLAEAEDLVNSR
FT                 PLTYAGLGPEAGEALTPNHFVKGVDLAVDQVSKTANAEALRDLYKRSQVLA
FT                 DRMWDRWIAEYVPAINNRTRWHAETQPIRLGDLVYIAEEGVRKCWTRGVVR
FT                 EVYPGADGRVRQALVKTAKGVFRRPVAKLAVLEIQERNSGVGVAPPELRGG
FT                 G"
XX
SQ   Sequence 5946 BP; 1528 A; 1351 C; 1864 G; 1203 T; 0 other;
     ttcttgaaaa ttttataatg tcgagaccaa gtcaggatcc tgaaaggaca ggtttcaact        60
     gcgcgggttg ccatcgtccg gatgatgacg agagtgagat ggtgttttgt gaccactgtc       120
     aacggtggta ccatttcgga tgtgctggtg tgtcggccga tgtgagggac gtttcgtggt       180
     cgtgcgaaga gtgtctgcgc ctgttggcgg acaaagaggg gccacccggc ctagaagagg       240
     agttgaaaaa actcgaacaa gagatggaga aggaaaggca ggccattgaa ttggagaaaa       300
     tccttcacaa gaagaggctg gagcatcaga aaaagctatt tctgctgcgt cagcaggcgg       360
     aaaaggagaa gcgagatatg gagttggcgt acgagcagga gcaaatggaa ctgcaggtgg       420
     cagaagaaga agcccaccgg aagaagcgcg atgagatgct gaggcagatg caagcgaagc       480
     tggagaatgt gaaggttgat ttggcaagga aagaggtagc agaacgggaa agaggagcat       540
     tcggagccgt aaatggagaa agccgggaag aatggaagtc caagcaagcg aagtcgggga       600
     tggaaaagcc ggatgaagat gagcccgaga aacgaaagtc gagcaaatca aaccggaaaa       660
     cagctgaacc gatgaaagca gaccgtgaag attaccgtgg agccttcagt aagttttcca       720
     caccgaaagc gtccggagtt gcaccgcctg tactacagga tttgacctcg ctacctgctg       780
     taagcgacaa gcgaactccg ctagggcatc cagcgttgca gaagaagaag aaaaagcagt       840
     tcgtcgaagt cgaagaagag gctcaaggat tgtatccagc caacgaaaca tccgaggaag       900
     aggagtccga agattcggat tcagaggaag agagctcgtc gcaggaggaa gacttcggaa       960
     tgcgtcccga aatcgttatg cgtggaccaa cgaaggccca actatccgct cggcagttcc      1020
     tgtcgaagaa gcttcctaca ttcacggggc ggctcgaaga atggccgatg ttcatcagtg      1080
     cctacgagac gtctactaaa gcgtgtggat tttccaatgt cgagaatctc gcacgacttc      1140
     aagagtgctt gaagggtcaa gcgctggatg cggtgagaag caggttgcta cttcccagtg      1200
     cagtgccgca aatcatcaaa accctgcgga tgctgtacgg aaggcctgag cagctgctga      1260
     atatgctgct ttcgaacgtg cgaaaggctc cgtcgccaaa aggggataaa ttggcgacgt      1320
     tcattcagtt cggtgtcgtc gttcagcagc ttaccgatca tttggaggca acgggactga      1380
     cagcgcatct catcaacccg atgctcatcc aggagttgac ggaaaaactg cctgccagca      1440
     cgcagctgga atgggtgcgg taccggagga aagcccaagt cgttacgctc cggacattgt      1500
     ccaactttct ctcgcgaatc gttaaggatg ccagcgagat cactccgtac agcgagtcgg      1560
     caccagttgc atcggatcaa gcgttccgga agaagaaggg aaggaatgag caagccggat      1620
     ttctgcacac gcacaacgtt gaagacagcg gagcagtcca ccaagttccg caaagggaga      1680
     agaagccatg caggatttgc ggccgctgcg atcatcggat tcggaactgc gacactttca      1740
     agaggttgcg tctgtcggaa agatgggaag cggtacggaa gtggaagctt tgctatctgt      1800
     gcctcaacga acacgggagc gcacgatgca aactgaactt ccggtgcaac gtgaaccagt      1860
     gcaacgaacg ccacaatccg ctgctgcact tcgaccaaac ggttagcacg aattgcaacg      1920
     tgcatctgca tcgccagtcg gtgattttcc ggatgatacc gatcactgtc tacaacggga      1980
     agctggccgt agacaccatt gctttccttg acgaagggtc gtcatacacg ttgctggaga      2040
     agtcgttggc catcgcgttg caagccagag gtgtgacgca gccactccga gttacttgga      2100
     cagctggcgt gtcccgagtg gagaaggatt cgcaaaaggt agagatcttc gtttcagccc      2160
     gaggatcgac gcagcgtttc cgcatcaaag ccgcccatac ggtggaaagt ttgaagctac      2220
     cgcagcaaac ggtcgctatg tcggaagtcg tcaacggcca tccccacctg cgaggtctgc      2280
     cggtggccga attccatcga ggagtcccgc aaatcttgat aggactgaag gacatccatc      2340
     tgtatgcgcc tcttgaatcc aggattggta aaccggatga accaatcgcc gtccgatcca      2400
     agcttggttg gacgatctac ggtcctacgt gtgcaagccg agccgagtct ggaattgtcg      2460
     gccatcacaa ctgcgaaacg gtttcgaacc aggagttgca cgacatgcta cgaagccact      2520
     acaccctgga ggagtcggtg atttccgtgg cgatgctgcc ggaatccgaa gaagataagc      2580
     gagcgaaggc gattctcagc aatgcgactg tgcgaattgg tgaccgcttc gagacggggc      2640
     tattgtggaa ggaggacgaa gtacggttcc ccgacagcta cccgatggtg atgaagcgtt      2700
     tccgttgtct ggaaaggcgg ctagcgaaag acgatcagct gtgcaagaag gtaagcgagt      2760
     tgattaacga ctatgcgatg aagggctaca ttcacgtagc aacagaaggg gagttaagac      2820
     aattcgagcc agaagaggtg tggtatttgc cgatcagcgt ggtggtgcat ccaaagaaac      2880
     cggggaaagt gcgtctggtg tgggacgcgg cggcggcggt caacggtgtg tcgctgaact      2940
     cgaagttgtt gaaggggccg gacatgttga caccgcttcc caatgttcta gcgaaattcc      3000
     gtgagcgagt agtaggtttc ggaggcgaca tcagggagat gtatctgcaa gtgcgagtgc      3060
     gcgcagcaga caagcgagcg cggttcgttt tccgcaacag cgcgtcggaa gagatgaaga      3120
     tctacataat cgatgtgacg atgtttggcg cgacgagttc tccttgcacg gcgcagttcg      3180
     tcaagaaccg taacgcagag gaatacgccg gacagtttcc ggaagcggct agagcgatag      3240
     tcgagaatca ttacgtggac gattatttcg acagcacgga caccgtcgaa gaagcagtga      3300
     agagagccca agaagtgaaa ttcgtccatt ccaagggcgg gttcgagatt cgaaactggg      3360
     tgtcgaattc ggaagagttt ctccatggca tcggggagcg cacacccgac cagagcttgc      3420
     agatcctgca ggataaagag tccaatctgg agcgtgtgct aggaatagtg tggaatccag      3480
     ttagcgacga gttcaccttt ctggcgaagc ttcgagaaga tctggtgccg tttttctctg      3540
     gcgatcgtcg gccgactaag agggtggtga tgagcagcgt catgagtttg ttcgatccgc      3600
     taggaatgct ggcaacattc gtgattcacg ggaaaatgct gattcaggat ctgtggcgaa      3660
     gcggcagcga ctgggatcaa ccgatcgacg acgaaagctg cgagaagtgg gatcggtgga      3720
     tagctcgtct cccggagatt gaacatgtga agattccccg ctactatttt catgggtcga      3780
     ggtccgtgga ttatgatacg cttcaacttc acgtgcttgt cgacgccagc caagacgcat      3840
     atggtgcagc ggcatatttc cgggtgctca caagtgatgg gccggcttgt tttttggtga      3900
     tggcgaggtc gaaggttgct ccgttgaaaa tgatgtccat tccgaggcta gagctgcaag      3960
     cggcggtgat cggagcgaga ttattgcaga cggtcgtcga ggcgcactcg ctagacatca      4020
     aagaacggtt catttggtcg gattcaagaa ccgtagtctc ctggatccat tcagagcagc      4080
     ggcggtacaa gccttttgtg gcgttccgga tcggcgagat tttgagcctc acgaagcaca      4140
     gcgagtggcg ttggatatcg acgagaagca acatcgcgga cgatctgacg aaatggaaga      4200
     gtggaagtag cctggactcg aatggaccgt ggtttcgagg tccaagtttt ctttaccagc      4260
     cggaagaacg gtggacaaat caagaagcgg tagaagcgaa tactcctgaa gaggtacggg      4320
     cgtgtcatct gcttcacgac atttcgatag tagagccaat ggtcgatgtg tcgcgcattt      4380
     cccgttggaa ggtgttggtc agggcggttg catgcgtcta ccggttcata tccaactgcg      4440
     accggaagag caagggtctg gcgatcgaag cggttccggc aacacctaga gtgcgcagtt      4500
     tggtgaaaag aaccatacca gcggtggcag ttccactaaa gcgagaagag catcagcgag      4560
     cggaagccta tctttggcgg tcggcacagg tcgattctta cgaggaagaa gtgaagacaa      4620
     tggtgaagaa ccgtgaagta ccacgcagcg agtggcaacc gatcgagaag tgcagcagtc      4680
     tgtacagcga cagcccgttt ttagacgatg atggtgtact gaggatggaa ggcagagcgg      4740
     cacagggttc gttcctccct ttcgaactcc ggtttccggt tattctaccg aaaaagcatc      4800
     ccattacccg gaagttgctg gaatattacc atcagcaagc ggcgcacgcg aattcggaga      4860
     ctgtggtcaa cgaggtccga cagcgttttc ggattccgaa tctccgagcg gaattaaagg      4920
     cggtggtgaa ggcttgcttg tggtgtagga caaggaaatg cgctccgaag gttcctcgga      4980
     tggcacctct cccactagcg cgaattactc ctgggtggag gccatttagc ttcaccggcg      5040
     tggactattg cggtccgatc atggtcacgg ttgggcgtag atccgaaaag cgttggatct      5100
     gcctattcac gtgcctcaca acgagagcga ttcacctgga agtggcacac agcttgacga      5160
     cgcaggcgtg tctgatggca attcgacgtt ttgtgtgtcg cagaggcaaa ccggtcgaat      5220
     tctattccga caacgggaca aatttccaag gagcgagcaa ggagctaatt cagaaaatag      5280
     atggagaatg cgaagaagcg atgacggatg ctcggactcg gtggaacttc aatccaccaa      5340
     gcgcgcccca catgggaggc gtctgggagc ggttagtccg atccgtgaaa gcggcactgg      5400
     cggtgttgaa cgatggcaga aggttgacgg atgaggtcct gctgactaca ctggccgaag      5460
     cagaggacct tgtgaattca cggccgttga cgtacgcagg attgggaccc gaggcaggtg      5520
     aagcgttaac accaaatcac ttcgtgaaag gtgtagacct ggctgtagat caggtttcga      5580
     agacagcgaa tgcggaggct ttgcgagacc tctacaagcg gtcacaggtg ttggctgatc      5640
     ggatgtggga ccgttggata gcggaatacg tgccggcgat caacaaccgc acgagatggc      5700
     atgcagagac ccagccaatc aggctggggg atctggtgta catagccgaa gaaggagtga      5760
     ggaagtgttg gacacgtgga gttgttaggg aggtgtatcc tggcgctgat ggccgagtga      5820
     ggcaagcgtt ggtgaagacg gcgaaaggag tgttccggcg tccggtggca aagctggcgg      5880
     tgctggaaat tcaggagcgt aactctggtg ttggagtagc ccccccagaa ttacggggag      5940
     ggggta                                                                 5946
//
ID   BEL-704_AA-LTR repbase;    DNA;    INV; 568 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-704_AA-I;
KW   BEL-704_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-568
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-568
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 353-353 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 568 BP; 201 A; 73 C; 133 G; 161 T; 0 other;
     tgttcgcacc acccaacatc gaacaaccat cacccaactg aaggtgtcgg tttggtagcg        60
     tgtagtaggt aggcgaatta aagtaagcaa actgtcgggt gttgaattcg tcccggcgca       120
     aaatgtaaat attggggagg aagattattt tgtaaataga agaaaagtta ctgtgctgta       180
     gccattgcga attggtggaa gtaaatttga gcgcgcagat aaattagtag atttgaattg       240
     aattgtgcga attgaaattg gaacggtgga aaaaggagaa atagcggttc ggaatttgtt       300
     tttgagattt cggataaagc tgtaagtagt agaacagtat tgtaaaccgg attatattta       360
     tttatgatga tccacagatt ggtgagaaag cccggtgcaa cgaaacctgt aaagaaaagg       420
     ataattaaac gcaaactata aaatgtaagt tgaaaattat tatgaagtat tattaagaaa       480
     attaattgaa tatatttagt ttcaagctac tactgcaata acaacagtgc tttgagaatt       540
     ttatttcgag aactggtccg aacgaaca                                          568
//
ID   BEL-705_AA-I repbase;    DNA;    INV; 6243 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   20-JAN-2021 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-705_;
KW   BEL-705_AA-I; BEL-705_AA-LTR.
XX
NM   BEL-705_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6243
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 415-415 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other. The sequence 73-237
CC   is an insertion of Zator (~85% identical to Zator-N4_AAe).
XX
FH   Key           Location/Qualifiers
FT   CDS           230..6208
FT                 /product="BEL-705_AA-I_1p"
FT                 /translation="MSPKGSNAGGCDYGAVGGVRLVVTDDTVEPEATFPGR
FT                 SCRVCRADDTDEMVRCDKCLKWYHFVCVGVTQAIENEPWSCAYCANPNNVT
FT                 VGLEPPLLGGAKSNAADRDKLNLLIHQESSGLPTPKTSKASRGESKKXTAS
FT                 KGKSHTADLPPSDDRYLKGVSGPNEIASHSLKGNGKLPPNGCNQVLPKEAI
FT                 TELGKATSVASHVSSRASSRSSQALVKLKLQKLEEERILNAKKLEQERTYL
FT                 EDKYRLLEELASEGGFDANSVSDVISEWRPRAQSSHHSRQEDRRLATHESL
FT                 DLGADCSAMHRCRSFVEGQRSMHREIPQFISHSPERKEDCCPLTKKQLAAR
FT                 QAVSKDLPPFSGNPEDWPLFIATFNNTTSMCGFTNDENIFRLQKSLKGRAF
FT                 EAVKSRLVHPSNVPGVLKTLKMMFGQPEAIVHTLIEKINCLPAIREDKLET
FT                 LVDFAVNVENFCATVDACGLEEYLYNTTLLHQLVSKLPPTIKLNWAQYKVS
FT                 LPGVNLAAFSSWMYSLAEAASSVTIPNITSTKPPRSESHGTKKGNAFVNAH
FT                 SENSSAEIRPSHSPSGKDSTTSDECIVCKGNCKMVEKCKRFLDFSRESRWA
FT                 MVREFALCRRCLCRHNGPCQAKPCGKNGCQFRHHALLHNDQKQQPTVTSAP
FT                 PSSSTEASSATGNTEAPTAGTSSSVHGCHTHQTKSSDVLFRYLPVMLHGKR
FT                 RSVRTYAFLDDGSDLTLLDGELADELQLEGEVRSLCLHWTGGTQRQEVKSK
FT                 VVDXEISGERNGAKSFDICGVRTVNELLLPHQTXDIVELSSLYPHLQGLPI
FT                 DSYRDVRPRILIGLKNQHLSLALKCREGKPDDPVAIKTRLGWTVCGGGSSQ
FT                 SATNLVHSVYHIESCEGHCNVDEDLHQALKNYFTLDSLGIMNPSKTLLSTD
FT                 DQRAQSLLQSLTKFTGXRYETGLLWRYDSVRLPDSQVMAQXRFQCLERRMN
FT                 KDEVIAKTLRXKXADYLSKGYIRKLSDEELLQPFLRVWYLPTFPVTNPNKP
FT                 GKVRIVWDAAAKAFGVSLNSALLKGPDHLSSLFTVLTRFREXPVALTGDIR
FT                 EMFHQVLIREEDQQCQRFYWRDEDGALSVYVMCVMTFGACCSPSSAQYAMN
FT                 LNAKRFDQXYPAAVEIIGKQHYVDDMLVSVDNEEEAIKLADDVRFVHSQGG
FT                 FEIRNWASNSPRVLEALCGTNAQEKNLDLSSEMATEKVLGMWWCTATDTFT
FT                 YKVSWDRYDRDLWGGCRQPTKREVLRVLMTIFDPLGLIAPFLMFLKILLQE
FT                 IWRSGIQWDDKIDENTFAKWRSWLQVLPEVEKVRVPRCFRSQLDSPYDDVQ
FT                 LHTFVDASENGMAAACFLRFVRDEAVCCWLVAAKTRVAPLRYHSIPRLELM
FT                 AAVIGTRLSHTVVDSLSFKVNKRFYHSDSRDVICWLHSDHRRYTPFVACRV
FT                 SEILEVTEQDQWRWVPTKLNVADDATKWEKFPDMTPESRWFIGPDFLRLPE
FT                 DKWPCQQIKGGDTSIELRPHLLTHFTVPDPEINVSSWKRMLKVAALIHRFP
FT                 ANCRYKKQGKPLXCGSPSTDELQTAERYVIRQAQCGAYPEEVGILLHRKDD
FT                 TKKTIPKTSSLFKLTPWIDDHGLMRMRGRIGACSQALEDAKNPIILPPDHH
FT                 TTKLIIAHYHNKYNHQNHETAINELRQRYCIPRLRATYAKVRYNCQHCKNY
FT                 RAVPHPPIMADLPSERLDAFARPFSHIGVDYFGPIEVAVGRRVEKRWGMLV
FT                 TCLTTRAIHIEVVHTLSTGSCIMGLRNFVARRGTPKTIYSDRGTCFIGASR
FT                 ELEAVTTVINQEEIMKEFGGTETTWKFNPPASPHMGGSWERLIGVVKRNLM
FT                 AIRPPHKPNDEVLRNLLTEVENTVNSRPLTHVPVDDESAPALTPNHFLLGA
FT                 SDGTKPLCTLDDSGTTLRRSWKMSQQLANQFWKRWLTDYLPEITRRTKWYT
FT                 NTKPIAIGDVVVITDPKLPRNCWPKGKVIGTSVNQKDGQIRAATVQTLTGV
FT                 FERPVAKLAVLDVRRDDL"
XX
SQ   Sequence 6243 BP; 1725 A; 1527 C; 1539 G; 1439 T; 13 other;
     tcttatttta ttcgtttact agcgagtaat tcagtcaaat tcggtcatgt cgagtcgaag        60
     tcggtctaat aagggcccat tcacaaattt cataacgctg gagggggtgg gtgggtgtcc       120
     aaacgatgtt acggcccata caaaaactga ataatattca tacaaaaagc gttacaaggg       180
     ggtgggtggg tgtccaaaaa gaccaatttc agcgttatga aataaatgaa tgagccctaa       240
     aggcagtaac gcaggtggtt gcgattatgg tgcggttggt ggtgtgcgat tggtggtcac       300
     cgacgataca gtggaacccg aggctacatt tcctggtcgg tcgtgtagag tctgtcgtgc       360
     ggacgatacg gacgaaatgg tgagatgcga taagtgtctg aaatggtatc acttcgtttg       420
     cgtaggcgtt acccaagcta tcgagaacga accctggagt tgcgcttatt gtgcgaatcc       480
     caacaatgtt accgtgggac tggaacctcc actgttaggt ggtgctaaga gtaatgctgc       540
     agatcgcgat aagctcaatc ttctaattca tcaagagtcg agtggtttgc caacacctaa       600
     gacgtccaaa gctagcaggg gggagtcaaa aaagaakaca gcttcgaaag ggaagtctca       660
     tacagctgat ttgccaccat cagacgatag gtacttgaaa ggagtcagtg gaccaaacga       720
     aatcgccagt cattcactga aaggcaacgg taagctaccc ccaaatggct gtaaccaggt       780
     actaccgaag gaagcaatta ccgagctagg aaaagcgaca tcggtggcat ctcacgtgtc       840
     cagtcgagca tcaagtagat cgtctcaagc gcttgtcaag ctaaagctgc agaaactaga       900
     agaagaacgg atcctgaacg cgaagaagtt agagcaggag cggacttatc tggaggacaa       960
     gtatcggctg ctcgaagaat tagctagtga aggcgggttc gatgcaaaca gtgtttcgga      1020
     tgttataagc gaatggcgtc ctcgagcgca atcaagccac cactcacgac aggaagatcg      1080
     acgattagct acacacgagt cacttgatct cggcgctgat tgttcagcca tgcacagatg      1140
     cagatcattc gtcgaaggac aacgtagtat gcaccgtgaa atcccacagt tcatcagcca      1200
     ttcaccagaa cgtaaagaag attgctgccc acttaccaag aaacagttag cggcccgcca      1260
     agctgtctca aaggatctgc ctccgttttc cggcaacccc gaggattggc cgttattcat      1320
     agcaacgttc aacaatacta cgtcaatgtg cggttttact aacgatgaaa acatatttcg      1380
     cctgcagaaa agcttaaagg ggcgagcctt tgaagcagtg aaaagccgtc tggtacaccc      1440
     ctctaatgtt cctggggtgc taaagaccct aaaaatgatg ttcgggcagc cagaggccat      1500
     cgtgcacacg ctcatcgaaa aaattaactg ccttccagct attagagagg acaagctaga      1560
     aactctagtg gactttgccg taaatgtaga gaatttttgt gcgactgtgg atgcctgtgg      1620
     tctggaggag tatctctaca atactaccct tctacaccag ctagtgagca agttacctcc      1680
     aacaatcaaa ctaaattggg cgcagtacaa ggtttctctg ccgggagtca acttagcagc      1740
     gtttagttcc tggatgtact ctctcgccga agctgcaagc tcggtaacta ttccgaacat      1800
     cacaagtaca aaaccgcctc ggagcgagag tcatggcaca aaaaagggaa acgcctttgt      1860
     caacgctcat tcggaaaatt cttctgcaga aatccgtcca tcgcactcac cgagtggaaa      1920
     ggattccacc actagcgatg agtgcatcgt ttgtaaagga aattgtaaga tggtcgaaaa      1980
     gtgtaagcgt tttcttgact tctctcgaga atcacgttgg gctatggtac gtgagttcgc      2040
     actatgtcgc cgttgtcttt gccgacacaa tggaccatgt caagccaaac cctgcggtaa      2100
     gaatggttgt cagttcagac atcatgcgtt attgcacaac gatcaaaaac agcaaccgac      2160
     agttacttcg gcaccaccgt cctcttcgac agaagcatcc tcggctacag gcaatacgga      2220
     agctcctaca gctggaacta gctcatcagt gcatggttgt catacgcatc aaaccaaatc      2280
     gagcgatgta ttgttccgtt atcttccagt aatgctacac ggtaaacgaa gatcagtccg      2340
     tacttatgca ttcctcgacg atggctcaga tctcacgttg cttgacggag aactagccga      2400
     cgagctacaa ctggagggtg aagtgcgatc gctatgccta cattggaccg gcggcacaca      2460
     gcgtcaagaa gtgaagtcaa aagtcgttga ccwcgaaata tcsggtgaac gtaatggagc      2520
     taaaagcttc gatatttgcg gtgttcgtac agtgaacgag cttctacttc cacaccaaac      2580
     gawggacatc gtggagctgt cctcccttta tccacaccta cagggacttc caattgattc      2640
     gtaccgggac gtccgtccac ggattttgat tggtcttaaa aaccaacatc ttagcctcgc      2700
     ccttaaatgt cgtgaaggga agccggacga tcccgtcgcc attaagaccc gcctaggctg      2760
     gacagtgtgt ggaggtggat cctcacagtc tgcaaccaat ctagtacact ccgtctacca      2820
     catcgaatct tgcgagggcc actgcaatgt ggacgaggat ctgcaccaag ctctcaaaaa      2880
     ttattttacg ctagatagct taggtattat gaatccaagc aaaacactac tctctaccga      2940
     tgatcaacga gcccaatcac ttctccagtc gctgactaag tttacaggag amcgctacga      3000
     aaccggcctg ctttggcgct acgattccgt gcgccttcca gatagtcaag tgatggctca      3060
     ackacgcttt cagtgtctcg aaaggcgcat gaacaaggac gaagttattg ccaaaacttt      3120
     gagakaaaaa awggccgatt acttgagcaa aggctacata cgaaagctat ccgatgaaga      3180
     gctactgcag ccattcctgc gcgtttggta tcttccaact ttcccggtta caaatccaaa      3240
     caagccgggg aaggtgagaa tagtatggga tgcagcggcc aaagcgttcg gagtatcctt      3300
     gaactcagcc ttactcaaag gacctgatca tctatcgtca ctgttcaccg tattgacccg      3360
     cttccgtgag matcccgttg ctttgacagg tgacatacgt gagatgtttc accaagttct      3420
     tattcgagag gaagatcaac aatgccagcg attctactgg agggacgagg acggagcact      3480
     ttcggtgtac gtcatgtgcg tcatgacgtt tggagcctgc tgctctccta gtagcgctca      3540
     gtatgccatg aacttgaatg ccaagcggtt cgatcaagam tatccggccg ctgtggagat      3600
     catcggaaag cagcattatg ttgacgacat gctagtgagc gtcgacaacg aggaggaagc      3660
     tatcaaactt gccgatgatg ttaggttcgt gcactcgcag ggcggatttg aaatccgaaa      3720
     ctgggccagc aattcgccac gcgtcctaga agctctgtgt ggcactaacg ctcaggaaaa      3780
     aaacttagac ctttcatccg aaatggcgac tgaaaaggtg ctcgggatgt ggtggtgtac      3840
     agctaccgac accttcactt ataaagttag ttgggatcgc tacgatcgag atctatgggg      3900
     aggttgtcgt caacctacga aacgagaggt tctccgtgtm cttatgacga tatttgaccc      3960
     tcttgggctc attgcaccgt ttttaatgtt cctcaaaatt ctgctccaag agatttggcg      4020
     tagcggaatc cagtgggacg acaaaatcga cgaaaacacc ttcgctaagt ggcgcagttg      4080
     gctccaggta ctgcccgaag ttgagaaagt tagagtacca cgatgctttc gatctcaact      4140
     agattctcca tacgacgacg tccagttgca caccttcgtc gatgcgagcg agaatggaat      4200
     ggctgccgca tgcttcctga gatttgtacg ggatgaggct gtctgttgct ggttagtagc      4260
     cgccaaaaca agagtagcac cwttaagata tcactcgatt cctcggctcg agctaatggc      4320
     agcagtgatt ggcacaagac tttcccatac tgttgtcgat tcattgtcct tcaaggtgaa      4380
     caagcggttc tatcattccg attccagaga cgtcatttgc tggttacatt cggaccaccg      4440
     tcgctatacg ccattcgttg cctgccgagt cagcgaaatt cttgaagtaa cagaacaaga      4500
     ccagtggcgt tgggtcccga cgaagcttaa cgtggctgat gatgctacga agtgggagaa      4560
     gtttccagat atgactccgg agtctagatg gttcattggg ccagatttcc tgcggttacc      4620
     cgaagataaa tggccttgtc aacagataaa aggcggagac acaagtatcg aactacgtcc      4680
     gcatctactg acacacttta ctgtgccaga cccagaaatt aacgtctcca gctggaagcg      4740
     gatgcttaaa gttgctgcac ttatacaccg ttttcccgct aactgtcgtt ataaaaagca      4800
     aggaaagcct ctcmtttgtg gctctccgtc cacagatgaa ctccagactg ctgagcgcta      4860
     cgtaatacgg caagcacaat gcggagccta tccagaagaa gtaggaatcc ttctacatcg      4920
     aaaggacgac acgaagaaaa ccattcccaa gaccagttcg ttgttcaaat taacaccttg      4980
     gatagacgac catggattga tgcggatgcg aggaagaata ggcgcctgtt cccaggcact      5040
     tgaggacgct aaaaacccga taattcttcc acccgaccac cacactacca aactcataat      5100
     cgcacactac cacaacaagt acaaccacca gaaccacgag accgctataa acgagctacg      5160
     acagagatat tgcatacccc gattgcgggc gacctatgca aaagtgcgct acaattgcca      5220
     acattgcaag aactatcgtg ccgttcccca tccaccaatt atggccgacc ttccttcgga      5280
     acgacttgat gcatttgctc gacccttttc ccacattggc gtagactact ttggaccaat      5340
     agaagtcgcc gtaggccgtc gagttgagaa acgatgggga atgctagtta cctgcttgac      5400
     cactcgcgca atccacatag aagtggtaca cacgttaagt actggctcat gcatcatggg      5460
     tctccgaaac tttgtagcac gacgaggtac gccaaagaca atctatagcg accgcgggac      5520
     atgcttcatc ggcgcgagcc gtgaattaga agctgtgaca acggtaatca accaggagga      5580
     gataatgaag gagttcggcg gcactgagac gacatggaag ttcaaccctc cagcgtcacc      5640
     acacatgggc ggcagctggg aacgcttgat aggtgtagtg aagcggaact taatggcaat      5700
     tcgtcctcca cacaagccta acgatgaggt gttacgcaac ctattaaccg aggtcgagaa      5760
     taccgtcaac tcacggcctt tgactcacgt tccagtggac gatgagtccg cccctgccct      5820
     tactccgaat cacttcctct taggagcatc tgacggtaca aaaccattgt gtaccctaga      5880
     cgatagtgga acgacactac ggaggtcctg gaagatgtct caacaactag ccaaccaatt      5940
     ttggaagcgt tggctgactg actacttgcc agaaattact cgtagaacaa agtggtatac      6000
     taatacaaaa ccaatcgcca tcggagacgt ggtggtaatt acggacccga agctaccccg      6060
     gaactgctgg cctaagggta aggtcatcgg aactagtgtc aaccagaagg acggtcagat      6120
     cagagcagcc accgtgcaga ctttgactgg agtgttcgag cgtcccgtag ccaagttggc      6180
     tgttttggat gtgcgtcgcg acgatttgta agccgtctat agcatcggca tacccggggg      6240
     gag                                                                    6243
//
ID   BEL-705_AA-LTR repbase;    DNA;    INV; 806 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-705_AA-I;
KW   BEL-705_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-806
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-806
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 354-354 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 806 BP; 269 A; 160 C; 136 G; 237 T; 4 other;
     tgttgagtac gcccctggcg tagatgcgca tttgctcatc caataggtca cacttcacac        60
     accactgcac ccaggtaatg cacagacctt cactgcccag gacgttggtc aacggtggca       120
     attcaatggg agaggagaga aagcgatagt ttattatgaa agtatctaac aatagtacta       180
     catgctgaat tagtttactg tgtctaaaag tgattaaaat caactctaaa atttagttgc       240
     ttgtacatag aatttgctat ttgtgcaagc tttacaaggt aatatttcct ctcttaaatt       300
     acgagcatgt gaattataaa tacgctacat atttcctaca gttctggctc atgcaaagtg       360
     aattagttat aacctaaaat ctacttacat cctaaamctt catgcaaaag gtaaatttgt       420
     ttgctaawtt acaattacaa tacctaaatc taaattattc tagtacgatt aacggaatta       480
     agtacggaaa gttgcagtaa gtccagctat tacagtgaga ctccacatct cgcctgacca       540
     ttggtaattt gatcactcsc aagtatcgca ctacgggact aamcgtaagt taaatggcta       600
     aaatttacta ttgtttatta atactaagct aagaaactat gagaaagcct attatgtatt       660
     gaactaacaa agatactctg cataactcca ttacaggaat aaaataataa cccaattaag       720
     aacgtaaacc ccacgtttcc ggtcgttctg gtattatttg ttcggaaatc acacccgcgc       780
     cgtggaaagt tggcaaattc ccaaca                                            806
//
ID   BEL-706_AA-I repbase;    DNA;    INV; 5895 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-706_;
KW   BEL-706_AA-I; BEL-706_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5895
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5895
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 416-416 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..4409
FT                 /product="BEL-706_AA-I_1p"
FT                 /translation="MTRGSNKRSNVRFEHIEDSGDATDQDVSRIFSSCKIC
FT                 GSADNSRMVCCDTCGEWYHFECVGVNESIANVDWSCSGCIANPGVAGATTS
FT                 TTPETSTTTTTSRQSAEFETLQRQMESXRQMMSEQQKNFERLLKAKEEDQR
FT                 KALERQRTHFEHLLKFTEQASASNDXIPSHKSPSNSNMXRSSANLRVPSIP
FT                 IQPNANSTTIAGSIRVGGARRTTPGEGSVSIERQLTLLAKKQALEMKHLEE
FT                 RLKIMQLNXDMDDDQIEEDAVGLDPEAQEFTPTTDIFHLSQPYTELSRSQL
FT                 AARQAVAKELPIFSGAPEEWPLFIATYENTTRMCGYSDEENLLRLQRSLKG
FT                 KAXDAVRSRLLYPVGLPGVLQTLRTLFGRPEVIIHSLAYKIRNMPSPKTEK
FT                 LSTLIDFGIAVQNMCATIKACGLDEQLYNVALLQELVDRLPSTIKLNWALH
FT                 RQTLQTATLSNFSDWLEMLVEAACAVTVPTSVAFNPAKTEKRTRREDLNLH
FT                 IDSGLEETTSKPILKQTSKGCLICHGNCSSAAVCKKFQNFEINARWEALKQ
FT                 HKLCRKCLKKHFGACDVKSPCGKNGCSYMHHAMLHDDSRYQPTPTAPTPQG
FT                 SDNTGSNSSXSCNTHVSQDGKVLFRYIPVVIHGRGVSVETYAFMDDGSSAT
FT                 FMEHSLLKELKLDGKPAPLCLGWTANQHREEKESVKLSLEISGMSNCSKRY
FT                 ELSKVHTVRRLALPKQTVEIDKLAQQYKHLAGLPIASYRNVAPRILIGVDS
FT                 CRLGYAMNSREGSDGEPVASRTRLGWVVYGPCSVMPEKSNFTYSAHHSYHI
FT                 CPCSEEHDAELHKSVKDYFALENIGVQRPEKPLLSKXDERAVQLLESQTKF
FT                 NGTQYETGLLWRYENITLPHSRQMALKRLVCLEKKLEKDQQLFKAFNEKIH
FT                 EYQEKGYMRKMLPSEVDDSLPRSWYLPIFPVQNPNKPGKLRIVWDAAAKVN
FT                 GLSLNSVLLKGPDLLKSIVGVLYKFREFKVAVAADIVEMFHQVQMTPSDQH
FT                 SLKFLWRGCDKSQDPEVYTMVVMIFGASCSPTCAQFIKNLNAQRFANQFPR
FT                 AAEAIVDEHYVDDMLTSVESEAEAQDLAKQVEYVHGQAGFKIHNWLSNSKG
FT                 VLEVMGAENVNEKNLNTTAEHASDKVLGMWWCTSSDELTFKVSPRHDSELL
FT                 LGRSIPTKRQVLSTLMTIYDPLGLIGNYLMFLKILLQEIWRSGVAWDEPIA
FT                 SKQLEKWQLWLKVLPRIESVRIPRCYRKETSTSKMNDIQLHVFVDASENGY
FT                 AAAVYLRFEENGIIECALVGSKTRVAPLRFVSIPRLELQAAVLGARLASSI
FT                 SDTLKLKPACKFFWSDSRDVICWLNSDNRRYSQFVGCRVGEILELTETSEW
FT                 HWIPSKMNVADDATKDAKVAKLAESVVERSLVPRATISLGIKRYMAKFSXV
FT                 PWFYHFGIACSHPTSHNTRSNNQRRQIFSMEAFSSTYSVR"
FT   CDS           4159..5871
FT                 /product="BEL-706_AA-I_2p"
FT                 /translation="MWQMMLRRMRRWQSLPNLSSRGRWFRGPQFLWESKDT
FT                 WPNFPACPGSTTLELRAHIQHHTIHEAIINVDKFSQWKRLVRHTAFVRRFP
FT                 MNIRRKYSGKTRNTGPLNQDELKEAENYLYRQAQSESFGEEIRILQDADSE
FT                 PWKSKRKLLKHSSLYKLSPFIDGDGILRMDGRIDACEYVTNDVKQPILLPK
FT                 RHPITDLILLDTHQRYYHQNHQTTLNEIRQKYYVPSLRTIYRSVRSRCQFC
FT                 KVRKAVPQSPMMGKLPAMRLKPFVRPFSYIGIDYFGPLLVMVGRRVEKRWG
FT                 VLITCMTVRAVHIEVAHSLSTXSCILAIRNFVARRGMPLEIISDRGTNFVG
FT                 ANHELKDALQKMNQDKLIESFVSANTKWSFNPPATPHFGGCWERLIQSVKK
FT                 SLNYVKPSRTPTDELLRNMLTEIELVVNSRPLTEIPVEHDEASPLTPNHFL
FT                 IGSSNGIKPPVAFNDSVAAITYSRTMSMMYADQFWRRWVAEYLPTLTKRTK
FT                 WFHPVKPLEVGNIVIIVDEKLPRNCWPKGRIIGVTKSKDGQVRRASVQTSG
FT                 GIFERSAANLAVIEVGSTISKSDQ"
XX
SQ   Sequence 5895 BP; 1753 A; 1298 C; 1442 G; 1382 T; 20 other;
     aattagaaat ttcgtttacg cgatctggga gtgctgtcaa ctgcgaaatg acgagaggtt        60
     ccaataagcg ttcgaacgta cggtttgagc atattgaaga tagcggagat gctaccgacc       120
     aagatgtttc gaggattttc tcaagttgca agatttgtgg ctctgcagat aacagtcgga       180
     tggtatgttg cgacacttgt ggagagtggt accactttga gtgtgtgggc gtaaatgaga       240
     gcatagctaa tgtggattgg agctgtagcg gttgcatagc gaatccgggc gtagcgggtg       300
     ccacaacgtc aacgacacca gagaccagca ccacaacaac gacatcgagg cagtctgcag       360
     agttcgagac gttacaaagg caaatggaga gcwtgcgaca gatgatgtca gaacaacaaa       420
     agaacttcga acgattactc aaagccaaag aggaggacca acgaaaagcc ctggaacgtc       480
     agaggactca ttttgaacat ctgctgaagt ttactgaaca ggcaagtgcg tccaacgatc       540
     maattcccag ccacaaaagc ccgtcaaatt ccaacatgcm acgttcatcg gctaatttga       600
     gggttccgag cattccaata cagccgaatg cgaactcaac aactatagcc ggttcgattc       660
     gagttggtgg agctcgtcgg actacaccgg gagaaggatc agtgagtatc gaacggcaat       720
     tgacactgtt agccaaaaag caggcgctcg aaatgaagca tctagaagaa cgtttgaaaa       780
     ttatgcagtt gaacgscgat atggatgatg atcagatcga ggaagatgct gttggattgg       840
     atcctgaggc gcaggaattc acaccaacta cagatatttt ccatctatca caaccataca       900
     ccgagttgag taggagtcag ttagcagcgc gtcaagcagt tgcgaaggag ctaccaatat       960
     tttctggagc accggaggag tggccgctct ttatagccac ctacgagaat acaacaagaa      1020
     tgtgtggata cagtgatgaa gagaatttgc ttcggctgca acgcagtctc aaaggaaaag      1080
     ctmtggatgc cgttcgtagc cgcctgttgt atccggtggg tctaccagga gtgcttcaaa      1140
     cgctgcgaac cttgtttggg cgaccggagg tgataattca ttcattggcg tacaagattc      1200
     ggaacatgcc ttcgccgaaa acggaaaagc tgtcaacgct aattgacttc ggtatcgcag      1260
     ttcaaaatat gtgtgctacc atcaaagcat gcggwctcga cgagcaactc tacaacgtag      1320
     ctctacttca agagttagtt gatagactcc catcaacaat aaaactcaac tgggcattac      1380
     accggcaaac tctacaaact gctacactgt caaacttttc ggattggttg gagatgttag      1440
     tagaagcggc atgcgccgtg accgttccaa caagcgtggc ctttaatcca gcaaagactg      1500
     aaaagcgtac tcgcagagaa gatctgaatt tgcatatcga ctccggccta gaggaaacca      1560
     cttcgaaacc gatactaaaa caaactagta aaggttgcct tatttgtcat ggaaactgta      1620
     gcagcgcagc cgtttgcaag aagttccaaa acttcgaaat aaacgctcga tgggaggctc      1680
     tgaagcaaca taagctwtgc cgaaaatgct tgaaaaagca cttcggggca tgcgatgtga      1740
     aaagtccatg tgggaaaaat ggatgctcgt acatgcacca tgcgatgctg cacgacgact      1800
     cgcgctacca accaacacca actgcaccca caccgcaggg aagcgacaat actggcagca      1860
     attcttcgcw tagctgcaac actcatgtta gccaggacgg aaaagttttg tttcgatata      1920
     taccagttgt catacacgga cgcggggttt ctgttgagac ktacgcgttt atggacgacg      1980
     gctcttctgc gacctttatg gagcatagct tactgaaaga gctgaagctg gacggaaaac      2040
     ccgctccttt atgcctgggc tggacagcca atcaacatcg agaagagaag gaatcggtta      2100
     aactgtcttt ggagatttct ggcatgtcga actgtagcaa acgttacgag ctttcgaagg      2160
     tgcacacagt tcgccgcctt gctctgccga aacaaactgt tgaaatagac aagttagcac      2220
     agcaatacaa acacctagca ggattgccta tcgcttcgta tcggaatgtt gctccaagga      2280
     tactaattgg agtagatagt tgccgtttgg gttacgcaat gaatagccgt gaaggttctg      2340
     atggtgaacc agttgctagt cgaacacgtc tcggctgggt tgtgtatgga ccgtgctctg      2400
     tgatgccaga aaaatcgaat ttcacttatt cagcmcatca cagctatcac atctgtccat      2460
     gcagcgagga acatgatgct gaattacata aatctgtaaa ggattacttt gctttggaga      2520
     acatwggggt acaamgaccg gaaaagcccc tgttatcaaa akatgacgaa cgagcggtcc      2580
     agctattaga gtcccagaca aaatttaacg gaactcaata tgaaactgga ctactgtgga      2640
     gatatgagaa catcacgtta cctcacagta gacaaatggc gttgaagaga ttggtgtgcc      2700
     tggagaagaa gttggaaaaa gatcagcaac tgtttaaggc attcaacgag aaaatacatg      2760
     agtatcagga aaaaggatac atgagaaaaa tgttgccatc cgaagtagat gatagcctcc      2820
     ctcgctcatg gtatttacca atattccctg ttcaaaaccc gaataagccc ggcaaactac      2880
     gtatagtttg ggacgccgcc gcaaaagtta atggtttatc tctaaactct gtcttgctta      2940
     agggaccgga cctgctaaag tcaatagtag gagtgctcta caagttcagg gaatttaaag      3000
     tcgccgtggc ggctgatatt gttgaaatgt ttcatcaagt tcagatgact ccaagcgacc      3060
     agcattcgtt gaagtttctc tggagaggat gcgataagtc acaggatcca gaagtttaca      3120
     cgatggtagt gatgatattc ggcgcatcgt gttccccaac ctgtgcacaa ttcatcaaaa      3180
     atctgaatgc ccaacgcttt gccaaccaat tcccgcgagc agcagaagct attgtcgatg      3240
     agcactatgt cgatgacatg ttgactagtg tggaatcaga agccgaggcc caagatttgg      3300
     caaagcaagt ggaatacgtc catggtcaag caggttttaa aatccataac tggttgtcaa      3360
     actcaaaagg tgttctggag gtcatgggag cagaaaacgt saacgagaag aatctcaaca      3420
     ctacagcaga acacgcgtct gataaagtgt taggtatgtg gtggtgcact tcttcagatg      3480
     aactgacttt caaagtttcg ccacgacatg attctgagct acttctaggg cgtagcattc      3540
     ccacgaagag gcaggtgctg agtacattga tgactattta cgaccctctt ggcctgatag      3600
     ggaattattt gatgttcctg aaaattttgc tccaagaaat ctggcgctct ggagtggcat      3660
     gggacgaacc gatagcatct aagcaattag aaaaatggca actatggctg aaagttctac      3720
     caaggatcga atcggtacgg atccctagat gttaccggaa ggagacttca acttcgaaga      3780
     tgaatgatat acaacttcac gtttttgtgg atgcctccga gaacgggtac gctgcagcag      3840
     tatacttgcg gtttgaagag aatgggatta tagaatgtgc gctggtagga tcgaaaacaa      3900
     gggttgcccc gttacggttt gtgtcwatcc cacgcctcga gctacaggcc gctgttttag      3960
     gagcccgact ggcgagcagc atatcagata cgcttaagct gaagccggcc tgtaaattct      4020
     tctggtccga ctcacgcgat gtgatttgtt ggctgaattc agataatcgc agatacagcc      4080
     aattcgtcgg atgccgagtt ggagaaattt tggagctaac ggaaacatca gaatggcact      4140
     ggataccttc gaaaatgaat gtggcagatg atgctacgaa ggatgcgaag gtggcaaagc      4200
     ttgccgaatc tgtcgtcgag aggtcgttgg ttccgagggc cacaatttct ctgggaatca      4260
     aaagatacat ggccaaattt tccwgcgtgc cctggttcta ccactttgga attgcgtgct      4320
     cacatccaac atcacacaat acacgaagca ataatcaacg tcgacaaatt ttctcaatgg      4380
     aagcgtttag ttcgacatac agcgttcgtt agacgttttc caatgaatat cagacggaaa      4440
     tattcaggca aaacacgcaa caccggccct ctgaatcagg acgagttaaa ggaagccgag      4500
     aattatctgt atagacaagc tcaatctgaa tcctttggtg aggaaatccg catactgcaa      4560
     gatgctgatt cagaaccatg gaaaagtaag cgaaagttgc tgaaacatag ctccttatac      4620
     aaactaagcc cattcatcga cggtgatggt atactacgaa tggacggtcg tatagatgcc      4680
     tgtgaatatg ttaccaacga cgtaaagcaa ccgatcctgc ttcctaagcg tcatccaata      4740
     accgacctga tattgttgga cacccatcag cgatattacc atcaaaatca tcagacgacc      4800
     cttaatgaaa tccgtcaaaa gtactatgtc ccgagtctga gaactatcta tcgtagtgtc      4860
     cggagtcgtt gccagttctg caaggtcaga aaggcggtac cccaatcacc aatgatggga      4920
     aagctgccag ctatgcgcct gaaaccattt gtcagaccct tttcgtacat aggaatagac      4980
     tattttggac cactattagt aatggtcggc cgcagggtcg aaaaacgttg gggagtacta      5040
     ataacgtgta tgacagtcag agcagtacac atagaagtgg cccattcgtt atcaacagwa      5100
     tcatgcattc ttgcmattcg aaacttcgtt gcgcgaagag ggatgccctt ggaaatcatc      5160
     agcgatcgtg gaacgaactt cgtcggcgca aaccacgagc tgaaagatgc gttacaaaag      5220
     atgaatcaag ataaattgat agaaagcttt gtaagcgcca atacaaagtg gtcgttcaac      5280
     ccgcccgcta ccccgcattt cggaggatgt tgggaaagac taatccaatc ggttaaaaaa      5340
     agtctaaact atgtaaagcc cagtcggaca ccgaccgacg aattacttcg aaatatgctc      5400
     accgaaatcg aactcgtcgt caactctagg ccgctaacgg aaataccggt tgaacatgat      5460
     gaagcctctc cattaacccc gaaccacttc ctcattggat cctccaatgg tatcaagccc      5520
     ccggtcgcgt tcaacgacag tgtcgctgcg atcacgtact ctagaacgat gtcgatgatg      5580
     tacgcggatc aattttggcg acgctgggtt gccgagtacc ttccaacgtt aaccaaaagg      5640
     ackaagtggt ttcatcctgt taagcctttg gaagtaggaa atatcgtgat catagtggac      5700
     gaaaagttac ctagaaactg ttggccaaaa ggacgcatca tcggagtaac taaatcgaag      5760
     gatggacaag twcggcgagc atcagttcaa acatcaggtg gtattttcga gagatcagca      5820
     gctaatctgg cagtcattga agtcggttcg accattagta agtcggatca atgaccgcga      5880
     cccactgcgg gggag                                                       5895
//
ID   BEL-706_AA-LTR repbase;    DNA;    INV; 566 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-706_AA-I;
KW   BEL-706_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-566
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-566
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 355-355 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 566 BP; 201 A; 102 C; 82 G; 181 T; 0 other;
     tgttgcgctt gcaactaacc tccttcaatc caccaggcct gaagaggcgc aacttacaca        60
     tttatattat attcctacta cctacctttg ttaccatgtc attctcaaca tcagtatagc       120
     caaacagtag tgaattatca aaacgtgtgt acatggtgag aaggtttctt ataaaataat       180
     gaaaatatgt ccttaaattt gtatttattt tcctttctat tagttgaact atatactaca       240
     accattctgt aattgaatta cccattaaat ctaatctaag ctaaagctgt gaaaggtaaa       300
     cttacattcc caacagttgt ttgataaatc taacaagttg ccattacaga ctacagtaca       360
     tcccacgttg tggaaacgca tttaatctaa ttattaaact atgaaatgaa acactaaacg       420
     taagtatata aggatgagtt tataagaagt agtgagccgc aatttattaa tgaattatgt       480
     acttaaacag gaaatttcta acccattcga caccaaataa agtgaggtta aaaatatcgg       540
     aaaatcgttt cgttgtgtat gcaaca                                            566
//
ID   BEL-707_AA-I repbase;    DNA;    INV; 6350 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-707_;
KW   BEL-707_AA-I; BEL-707_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6350
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6350
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 417-417 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..6313
FT                 /product="BEL-707_AA-I_1p"
FT                 /translation="MQSDPPSXAQCIACNRPNTAEPKMVQCDGCNRWYHFS
FT                 CAGVGDSIAAEDRSYKCALCRPPSRAASSTSTTASAREARLRLEMQRLEEE
FT                 KKLEKEFLDRKFKLLQAQLDDDSKSSRASAVSVHRSTASNDDVQHWIDSHQ
FT                 ANLTTTTGNVAPTGVTSQTGGAIVSTVPISDGTTTLSSSKITPVTIVTSQE
FT                 AQPHQEATISKPLDHVISPTKPGGVSKSFDNVISPINTGQAAGFHRASNWR
FT                 VAPHAPFQSTPVSLNMPVVKTTTPAPWQPNINPSVSSFINQPTTAIASSHH
FT                 IPASVPCTAPGSSLNVRFMPEDPRVGQYXPYVLPGSSVVSTANLDSLGRNA
FT                 VDSTSRXYVHQAQTFPLSTQHIGYQPLPGSESQLCSSEIVDNNSLPCYSNP
FT                 LMPLVXQNAVPSRIRITQSIPQWGVNSQPQSLGPPMASVSSYQTPISAVPN
FT                 MXMQYGGLQPSFGPNAQQLAARHVVPKDLPHFDGNPTEWPIFWSSYETSTQ
FT                 LCGYNEAENLMRLQRSLKGDAKKAVCSLLLHPSNVPDIIKTLKVLYGRPEA
FT                 IISTLLAEVRAAPTPRPEKLGSIISFGLAVRNLCAHLIATDQQVHLANPIL
FT                 IEELVEKLPANIKLDWALYKQRVVDANLKTFSDYMDVIVTAASSVTPVTDK
FT                 TDKMKGKAVVNSHTSEVHTVQVRDPNVPRXSEAPIQPGSQRPCMVCKVAGH
FT                 KPKDCSSFKSKTLEGKWQVAQEEHLCRRCLYPHGKWPCKAPVCGMEGCEQK
FT                 HHRLLHPGDPRINNATSSAPVSGVISVHQHHHQVLFRIIPVVLHANGRSVK
FT                 TFAFLDGGSDSTLMDSSLAKQLEVQGPISPLCMQWTNGVKRVEEESQQVQL
FT                 NISGTPSGKQFSLQKVQTVGGLELPKQSVDLAELRTKYPYLNGIPFESFED
FT                 AKPGILIGLDNTWLKTTLKLREGREHEPVAAKTRLGWVIYGRSGRNANTAX
FT                 PSVLHIGTRNHEDDLHELVKSFFSTESVGVSVKQARESADXQRAREILQAT
FT                 TKRTENGRFETGLLWKFDNVEFPNSKPMAERRLKCLEHRLMKSPSLYNGVR
FT                 QQIADYVSKGYAHKVTEQELAETDPKRTWYLPLGVVVNPKKPGKVRVVWDA
FT                 AAAVQGVSLNSVLLKGPDLLTSLQAVLSRFRQKEVAISGDIMEMFHQVLIT
FT                 RQDRSAQWFLWRDQPSDXIQVFVMDVAIFGATCSPSSTQYVKNLNAKEHAT
FT                 EFPKAAVAITDNHYVDDYLDSVDTVEEAVQLAVDVEEVHEKAGFLVRHWMS
FT                 NSSEVLQTIGEQNTKAIKSFTMDKGSNMERVLGMVWRPQDDVFVFSLTLRE
FT                 DLRSLVDGSTVPTKRQLLSLVMSVFDPLGLVAPFVIHGKTIIQEVWRSGIG
FT                 WDEQLPADIVPRWXQYITLLQSLDNVRIPRCYFPAYSMGAYESTELHVFVD
FT                 ASSAAYAAVAYFRIVDNGVIRCSLVSAKTKVAPMKLLSVPRLELQAAVIGT
FT                 RLLKAITTSHTLQIGRKVMWSDSSTVLNWIRSDPRKYKQYVAFRVTEILDE
FT                 TDVTEWRKVPSRMNVADEATKWGSGPCFXEDSRWYKAPKFLNYPECSWPNE
FT                 AIEKTTEEELKVVSVHXLLPTESIIDFQRFSKWERLTNTLAFVLRFSKRQT
FT                 TTGITEASSSSNTRKRAELVIFKLVQMSRYPEEYRVLQRNQQLRTEERKLV
FT                 ARSSCLFKLSPFLDPNGVMRMGSRIEKAECVPYEAKFPAILPKDHYVTDLV
FT                 LDWYHRKYGHANNETVVNEVRQKFHVSELRTAVKRTANNCNWCKVYKSKPQ
FT                 VPPMAPLPSARVTAYVRAFSFTGLDYFGPITVRFGRGSAKRWVALFTCLGT
FT                 RAVHLEVVYSLSTESCKLAIRRFISRRGAPQEIYSDQGTNFQGANAELKLQ
FT                 MRRVNQDLAETFTNAQTQWMFNPPYAPHMGGIWERLVRSVKAGLSSMSLSR
FT                 NPDEETLITAVVXVESIVNSRPLTYLPIDSQENEALTPNHFLLLSSNGVVQ
FT                 PAVRPSDEGAALRTNWKHIQVMLDRFWTRWIREYLPVIARQPKWFGEVKPI
FT                 NVGDLVIVVNEGMRNSWTRGKVLRVYPGRDGRVRCADIQTATGVMRRPATK
FT                 LAVLDVAREEV"
XX
SQ   Sequence 6350 BP; 1789 A; 1463 C; 1609 G; 1472 T; 17 other;
     aactttaaga tttgatatct tatcggaaat acctccagag ccgtgcgaaa tgcaatctga        60
     tccaccatct aakgctcagt gcatcgcctg caatcggccg aatacagcag aacctaagat       120
     ggtgcaatgt gacggctgca atcgatggta ccatttctca tgtgctggtg ttggcgatag       180
     catagcagca gaggatcgga gctacaaatg tgccctctgt cgcccaccat ctcgtgcggc       240
     gtcatcgaca tcgactacag ccagtgcgcg agaagcaagg ctgcgattag aaatgcagcg       300
     cttggaagaa gaaaagaagt tggagaagga gtttcttgat cggaaattca agctgcttca       360
     agctcagctg gatgacgata gtaagagttc gagagcaagt gcagtgagcg tgcacaggtc       420
     aaccgctagc aacgatgatg ttcaacattg gatcgacagc catcaagcga atctgactac       480
     cacaactggg aatgttgctc ccactggagt cacatcgcag accggtggag cgatcgtatc       540
     aacggtgccg atatcggatg gaaccaccac gctaagcagc tcaaaaataa ctccagtgac       600
     tatagttacc agccaagaag cacaaccaca tcaggaagcc accatttcga aaccgttaga       660
     ccatgttatc tcacccacca aaccaggtgg agtttcgaaa tcgttcgaca acgtcatctc       720
     tccaataaat actggacaag cggcaggatt ccatcgtgca tcgaattgga gggttgcacc       780
     tcatgcaccg tttcaatcaa cgcccgtgtc attgaatatg ccagttgtga aaacgacaac       840
     gcccgcgccg tggcagccga acataaatcc atcggtttcg tctttcatca atcaaccaac       900
     gacagcgatt gcatcatcac accatattcc ggcgtcggtg ccctgtactg cccctggttc       960
     atcgctcaac gtaaggttca tgcctgaaga tcctcgagtt ggtcagtatm atccttatgt      1020
     tttacctggt tcatctgtgg tgagtactgc caatttagat tcccttggaa gaaatgccgt      1080
     agactcaacc agtcgaasat atgttcacca agcacaaaca tttccactat cgacgcagca      1140
     catagggtat caaccactac caggaagtga atcacaatta tgctcaagtg aaatagtaga      1200
     taacaatagt ctcccttgtt attcgaatcc attgatgccc ctagtcwctc aaaatgctgt      1260
     tccttctcga atacgtatta ctcaaagtat tccacaatgg ggggttaatt ctcagccgca      1320
     gtcactgggt cctccaatgg caagtgtgtc aagctaccaa acacctattt ccgccgtacc      1380
     gaacatgcam atgcagtacg ggggattgca gccatcattt ggtccaaatg ctcagcagtt      1440
     ggcagcgcgc catgttgtcc cgaaggatct tccacatttc gatgggaatc caacagagtg      1500
     gccgatcttc tggagtagct acgagacgtc tacgcaactt tgtggctaca atgaagcgga      1560
     gaacttaatg agacttcagc gcagtttgaa aggggacgca aagaaagcag tttgtagtct      1620
     gcttctgcac ccgtctaacg tcccggatat aatcaagacg ttgaaagttc tttacggccg      1680
     gccagaggca ataatcagta ccttactggc tgaagtccgt gcagcgccga ctccacgacc      1740
     tgagaaacta ggcagcatta tatccttcgg cttggctgtc cgaaatcttt gtgcccactt      1800
     aatcgcgact gatcagcaag ttcatttagc gaacccgatt ctgatcgaag aattggttga      1860
     aaagctacca gctaacatta agctcgattg ggctttatac aagcaacgag tggtagatgc      1920
     aaatctgaaa accttctcag actacatgga cgttattgtg acggcagcta gcagtgtaac      1980
     gccagttacg gacaaaaccg acaagatgaa ggggaaagcc gtggtgaatt ctcacacgtc      2040
     tgaagtacac acggttcaag ttcgagatcc aaacgtgccg agaawgtctg aagctccaat      2100
     tcaaccagga agccagcgtc cttgcatggt atgcaaagta gctggtcata agccgaaaga      2160
     ttgcagctct ttcaaatcga agactttgga gggcaagtgg caggtagcac aggaggagca      2220
     tctctgtagg cggtgcttgt atccgcatgg aaaatggccg tgcaaggccc ctgtttgcgg      2280
     aatggaagga tgcgaacaaa agcatcaccg gttattacac ccaggagatc caagaatcaa      2340
     caatgcgaca agctcagctc cggtttctgg tgtgatttcc gtgcaccaac atcatcatca      2400
     agtacttttt cgaataattc ctgtagttct ccacgccaac ggccggtcgg tcaaaacctt      2460
     cgcatttttg gatggtggtt ccgattcgac actgatggac agttctctgg cgaagcaact      2520
     ggaagtgcaa ggtccgatat ctccgctgtg catgcagtgg actaacggcg tcaagcgtgt      2580
     agaagaagaa tctcagcaag ttcaactgaa tatttcggga acaccttcag ggaagcaatt      2640
     ttcgctgcaa aaagtgcaaa cagttggtgg acttgaatta ccgaaacaat ccgtagattt      2700
     ggcagaactg cggaccaagt acccatattt gaatggaata ccatttgaga gtttcgagga      2760
     cgccaaaccg ggtatcttga tagggcttga caatacctgg ctgaaaacca cgctgaagct      2820
     acgagaaggt cgtgaacacg agccagtggc ggcgaaaacc agacttggtt gggtgattta      2880
     cggccgttct ggaagaaacg ccaatactgc tkgtccaagc gttctacaca ttggtacgcg      2940
     aaatcacgag gacgatttgc acgagctggt aaaaagcttt ttttccacgg aaagtgttgg      3000
     agtttcagta aagcaagcga gggaatcagc cgatgwtcaa cgagcaagag agattcttca      3060
     ggcaactacg aaaagaaccg aaaacggaag attcgaaact ggccttttgt ggaagtttga      3120
     caacgtcgaa tttcccaata gcaagcctat ggctgagcgg aggttgaagt gtctggagca      3180
     tcgtttgatg aaatcaccca gtttgtataa tggcgttcga cagcaaatag cggattacgt      3240
     atctaaagga tatgcacata aggtaactga acaagaatta gcagagacgg acccgaagcg      3300
     aacatggtat ctaccactag gtgtagtggt aaaccctaaa aagcccggta aggtgagagt      3360
     cgtgtgggat gctgctgcag ccgtgcaagg agtatccttg aattctgtac ttctcaaagg      3420
     tccagatttg cttacgtcgc tgcaagctgt tttgagccgc tttcgccaga aggaagtcgc      3480
     tatcagcggc gacataatgg aaatgttcca tcaggtkctt ataactcgtc aagatcgttc      3540
     agcccagtgg ttcctgtgga gggaccaacc gtccgacwcg atccaggtat tcgtcatgga      3600
     cgtcgctata ttcggggcca cctgctctcc gagttcaaca caatatgtga agaacctgaa      3660
     tgcaaaggag cacgccaccg agtttccgaa agctgctgta gcaataacag ataaccatta      3720
     tgtcgacgat tatctggaca gcgtcgacac tgtcgaggaa gcagttcagc tggctgtgga      3780
     tgttgaggag gtgcacgaga aggctggatt cctggttcgt cattggatgt cgaactcttc      3840
     cgaggtactg cagacaatcg gagagcagaa cacaaaggcg ataaagagct ttaccatgga      3900
     taaaggcagc aatatggaac gggtcctggg gatggtttgg cgaccgcaag atgacgtatt      3960
     cgttttttcg ttgacgctgc gggaagactt acgaagctta gttgatggat ccacagttcc      4020
     gactaaacgt cagcttttga gtcttgttat gagtgtgttt gatccgttgg ggttagtcgc      4080
     accgtttgtg atacacggga aaacaataat ccaagaagtg tggaggtcag gcataggatg      4140
     ggatgagcag cttccagccg atatagttcc caggtgggam cagtatatca cacttctgca      4200
     aagcttggat aatgtgcgta taccaagatg ctactttccg gcatacagca tgggagccta      4260
     cgagtcgacg gaactacatg tgtttgtaga tgcaagtagt gcagcgtacg ctgctgtagc      4320
     ctacttccgg attgtggaca atggagtaat acggtgcagt cttgtctccg ccaaaactaa      4380
     ggtagcacca atgaagctac tgtctgttcc tagactagaa ctccaagctg cagtgattgg      4440
     aacacggctc ctgaaggcaa ttacgacaag tcacaccttg cagataggac gcaaagttat      4500
     gtggagcgac tcgtctacgg ttcttaactg gatcaggtct gacccacgga agtataagca      4560
     gtacgtggcc ttccgagtta cggagatttt ggatgaaacg gatgtgacag agtggaggaa      4620
     agtgccgtca agaatgaacg tcgccgacga ggctacaaaa tggggatccg gcccgtgttt      4680
     tsatgaagac agtagatggt acaaagcccc aaagttcctc aactatcctg aatgcagctg      4740
     gcctaacgaa gcgattgaaa aaacaacaga agaggagttg aaggtagtct ctgtgcatcw      4800
     actactgcca accgaatcta tcatcgattt tcaacgtttt tcgaagtggg aaaggctaac      4860
     taatacattg gcgtttgtcc tgcgattcag caaaaggcag actacgacgg gaataacgga      4920
     agcaagctcg agcagtaaca cgaggaaacg ggctgaattg gtcatattca aactggttca      4980
     aatgagcaga tatccggaag aatatcgagt tctccagaga aatcaacaac tccgsactga      5040
     ggaacgcaag ttagtcgcca ggagcagctg cttgtttaaa ctatctccat ttttagaccc      5100
     caatggagtt atgagaatgg gatctcgcat agagaaagcc gagtgtgtac cgtatgaagc      5160
     taaatttcct gcaatattac cgaaggacca ctacgtcaca gatctggtac ttgactggta      5220
     ccacaggaaa tacggacacg ccaacaatga aaccgtggta aacgaggtga ggcagaaatt      5280
     ccacgtctct gaactacgaa cagctgttaa aaggaccgcc aataactgca attggtgcaa      5340
     ggtgtataaa tccaagccac aagtgccacc catggcacca ctaccgtcag ctcgcgttac      5400
     agcgtacgta agagcttttt ccttcacggg actggattac tttgggccaa tcacggtacg      5460
     tttcggtcga ggaagcgcaa aaaggtgggt cgcccttttt acctgcttgg gcacaagagc      5520
     tgtccatttg gaggttgtct attcgctttc gacagaatcc tgtaagttgg ccatacgcag      5580
     gttcatctct agacgtgggg caccwcaaga aatctactca gatcaaggaa ccaattttca      5640
     aggagcgaat gctgagttga agctgcagat gagaagggtt aaccaggatc tggcggagac      5700
     tttcaccaat gcgcaaaccc aatggatgtt taatcctccg tacgctccgc atatgggagg      5760
     aatttgggaa agactggtgc gctcagtcaa ggcaggtctt tccagcatgt cgttgtctcg      5820
     gaatccagat gaggagacct tgattactgc agtcgttgaw gtagaatcaa ttgtcaattc      5880
     tcgtcccctg acctacctac ctatcgacag tcaggaaaac gaagccttaa caccgaacca      5940
     tttccttcta ttaagctcga acggtgtagt tcagccggca gtacgacctt cggatgaggg      6000
     cgctgctctg cgaacaaatt ggaaacatat ccaagtaatg ctagacagat tttggacccg      6060
     ctggatccga gaatatttac ccgttatagc tcgtcaacca aagtggttcg gtgaagttaa      6120
     accgatcaat gtcggagacc tagtaatcgt ggtgaacgaa ggaatgcgga acagttggac      6180
     tcgaggaaag gttctacgcg tctaccctgg acgagatgga cgagttcgct gtgcggacat      6240
     tcaaactgck acaggagtca tgcggagacc cgcaacgaaa cttgctgttc tggatgttgc      6300
     cagagaggaa gtatagcttc aggagacctt aagcaatacg agcgggggcg                 6350
//
ID   BEL-707_AA-LTR repbase;    DNA;    INV; 465 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-707_AA-I;
KW   BEL-707_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-465
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-465
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 356-356 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 465 BP; 167 A; 80 C; 82 G; 135 T; 1 other;
     tgttggcaac ccggaccagt gagttcggta cccgcggttc agcaccaccc gcggttgcga        60
     ccgacaggac aaggagagag aaatgtcata ctttgtatta ttacgaatca gaaagtgcat       120
     tatcacggtt tatcmaaata ccaaattcgt tattatccta aacttattga attctaaatt       180
     tgttaaatgc taagtggatc aattgtaagt aagactactt tgtttctaaa taaatttgtt       240
     attctaagta ttaaaattat agcacagata ttggaataca cgattgctaa aaacgagacg       300
     gatgaattat acatgcagga ctatcaaatg taagctaatc taatattgta aaacacatga       360
     attgaataac aaattaaaat tatttcagct taaagctaac tcagaaacat aagtacgggt       420
     ttgtcttaaa gaggtccgaa aacgtcgtcc actcctatag caaca                       465
//
ID   BEL-708_AA-I repbase;    DNA;    INV; 6300 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-708_;
KW   BEL-708_AA-I; BEL-708_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6300
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6300
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 418-418 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..6297
FT                 /product="BEL-708_AA-I_1p"
FT                 /translation="MPNRSRASVGSLQSXEVLSSTRTEKCNICNSAGQGRL
FT                 WKCCVCRNCKHPTCIGLESDEDNHQFVCPQCQPPSGGVTQAFAPVPSGMPT
FT                 QTVPLEYVNLSWSQISPVTTGASSSVPMYMPPNAVGYSHTVMPRYSTAPSY
FT                 SYAAPFPPNNYAFPGNLSGFCNPAQAQPPYTNTSLPMLIRHPLPILSDATP
FT                 ITTGSIRESTVVPTILPPPGFPAQFSVNQPTPQVPTAVASIGKPMPIAPTL
FT                 PSCVPQNTSLAQADVKSQSSKATSSRRSTKQQQKQLELEMLDEERKLQEKE
FT                 EASKRDYLRRRYELLHEIASETSSTSGISEVDDGCNEKVNSWLQSGIPNRN
FT                 VTHTIASASQAFGYIRPAPAIPQAIPSQTADPFVQNATRIQPAESGLQLAQ
FT                 DDSQRPLRSIRFADMSAPGSAPNFNPVQRSTPRQITTQIEYGQNLSQNQVA
FT                 ARQAVSRELPPFSGTPEDWPLFFSTFNSTTEMCGYTMEENLIRLQKCLKGK
FT                 AYDAVKCRLMHPTNVPGIIGTLKMLYGNPEVIIHNIIAKIHAAPAPKAEKL
FT                 DTVIEFALTVQNLRATIEACELLEYSYNVALLTELVDKLPPPLKLDWAKHR
FT                 RTLSTVHLSTFADWLYDLAETLCPIASLNAARAAKNGPAFLNAHSEELNDA
FT                 SAMGSNSNALNISTKGCPACKSNCVSLDKCQRFLDLGYNARWAVVKDGGVC
FT                 RKCLKKHKGSCKVQQTCGRNGCSFKHHQLLHNSQRDAAEPSGNQNHKPDDE
FT                 VLSKTSSKERDCNAHHSSAAKTLFRVVPVMLYGRDRMVKTYAFLDDGSSWT
FT                 LMDADLGAELNLDGKPAPICLRWTGDKQRYEKDSKLVDVDISGTGENCKKY
FT                 PLREVYTVPNLGLFHQSLCMHDLVHQYRHLKGIPAESYEDVQPRLLIGVNN
FT                 ANLGHPQKSREGAMYEPLATKTRLGWIIHGGSDSGEFTGHHSLSVCDCSEN
FT                 SNENLHRAMQEYFSLDSVGILKANNLVISAEDQRAQAILQTMSRADNGRFV
FT                 SPLLWKFDEFRLPNSKPVALHRLRCLEARLKREPKLAEAMAQKMKDYVEQG
FT                 YIRKLTEAELKQPKARIWYLPIFPVFNPNKPGKLRIVWDAAAKSQGISLNM
FT                 MLLKGPDQLTSLNSVLYKFRENKVAICGDIKEMFHQTVIKEEDQNCQRFLW
FT                 REHPNDLEPSTFVMQVMTFGACCSPSCAQYAKNVNAREHEEEYPDAAEAII
FT                 KKHYVDDMLASVETEDEAIKLAQDVRHVHAKAGYEMRNWLSNSSTVLNSLN
FT                 EGKECEKNLNLTSGLATEKILGMWWCTATDTFTYKLSPKHDSDLLARKRMP
FT                 TKREMLRTLMAIFDPLGLISNLLIFLKILLQEVWRSRVGWDDQIPDELKDK
FT                 WELWLRYFPAVHSVSIPRCYRAMVRLEDDTNVQLHTFVDASELGYATVIYL
FT                 RFEQQGKVECMIVSAKARVAPLQFVSIPRLELQAAVIGSRLAETIVNSLSF
FT                 KVNQRFYWTDSLDVLCWIRSDHRRYSQFVGFRVSELLETTTISSWNWVGSK
FT                 DNVADEATKQQQPNLENSSRWFNGPDFLHQDPLYWPKEPVHSGNTIEELRA
FT                 HLLHQGNTSVSAVDFNYFDSWVRLLRVTARLLRYMGNLRKTATKQDRTGGP
FT                 LLKSELQSASFYIYKHIQREVYSEEINLLTNSNKPRLPKSSPIYSFTPFLD
FT                 EHGILRMLGRIGNCEFATMDVKNPIILPKDHHVTRLIVLDYHVRYQHGNHE
FT                 TVVNELRQKYRIPRLRVLYKSVKSSCQVCKNEKAKPNPPLMGDLPFARLAA
FT                 FTRPFSFIGVDYFGPLYVTVGRRLEKRWGVLVTCLTVRAIHVEIAHSLNAD
FT                 SCIMALRNFMARRGVPIRIFSDRGTNFVASSKELEAALREMDQDKVIHEIV
FT                 SPDTEWEFLPPASPHMGGCWERLVRSVKVNLQKMKPQRNHSDESLRNTLTE
FT                 IENIINSRPLTFVSVDDPDASVLTPNHFLLGSSSGLKPAAPLDDSGRSLRR
FT                 AWRASQVEANLFWQRWVRSYLPELTKRSKWFEKVKPITIDDIVVVVDPGLP
FT                 RNCWPLGRIISVKKGKDEQVRTATVQTKNGIYERPATKLAILDVRRDLQVS
FT                 QDTGVPGE"
XX
SQ   Sequence 6300 BP; 1880 A; 1534 C; 1448 G; 1437 T; 1 other;
     atttaaaaaa ttcgtttaca ctacgaccgt ctgcaagtga aaatgcctaa ccgctctcgg        60
     gcatctgtag gcagtctaca atcccakgaa gttttgagct ctacgcgaac agaaaaatgc       120
     aatatctgca acagtgcggg ccaaggtcgt ttgtggaaat gctgtgtatg ccgtaactgc       180
     aaacatccca cctgcatcgg cctagaatca gatgaagaca accaccaatt cgtctgtcca       240
     caatgccaac caccctccgg tggggtgacg caagcttttg ctccagttcc ttcaggtatg       300
     cccacacaaa cagttccgct agaatacgtg aatttgtcat ggtcgcaaat atcaccagtc       360
     acgaccggag cctcatcgtc ggttcccatg tacatgccac caaacgcagt cggctattcc       420
     cataccgtca tgccaagata ctcgactgct ccgtcatact cgtatgcagc accgtttcct       480
     ccaaacaact acgcattccc aggtaattta tcaggatttt gcaaccccgc ccaagcacaa       540
     ccgccgtaca caaatacatc gctgccgatg ttgatacgtc acccattgcc tatattgtca       600
     gatgcaaccc caatcactac cggatcgatt cgagaatcca cagtggtacc aacaattctt       660
     cctccaccag gtttcccggc acaattctca gtgaatcaac cgacaccaca agttccaact       720
     gctgttgcat ctatcggaaa acccatgcca atagctccga cgctgccttc atgcgttccg       780
     cagaacacgt ctttagctca agcggatgtc aaaagtcaaa gctccaaggc cacaagttcc       840
     aggcgatcca ccaagcagca acaaaaacag ttggaattag aaatgttgga tgaagaaagg       900
     aagctgcagg agaaggaaga agcgagtaag cgggattacc ttcgaagacg atacgagctg       960
     ctgcatgaaa tcgccagcga gacatcgtca acatcgggga tcagtgaagt agatgacgga      1020
     tgtaacgaga aggtcaactc atggttgcag agtggaatac cgaacaggaa cgtaactcat      1080
     actattgcat ctgcctcgca agcattcggg tatattcggc ctgcacccgc tataccgcag      1140
     gctataccgt cacaaaccgc agatcccttc gtgcaaaacg cgacacgtat ccaaccagcg      1200
     gaaagtggac ttcagcttgc acaagatgac agccaacgcc cactaagaag catacgattt      1260
     gccgatatga gtgctccagg cagtgcacca aacttcaacc cagtacagcg atcaactcca      1320
     aggcaaataa caacccagat cgagtacggt caaaatctat cacagaatca agtagccgca      1380
     agacaagctg tatctcgtga attgcctcct ttcagcggca caccggaaga ctggccccta      1440
     tttttctcaa ccttcaactc cacaacggaa atgtgtggat acacgatgga agaaaacctg      1500
     atacgcctgc agaaatgcct taagggcaag gcttatgatg ctgttaaatg cagacttatg      1560
     catccaacta acgtccctgg gatcatcggt acactgaaaa tgctctatgg caatcccgag      1620
     gttattattc acaatataat agcgaagatt catgctgctc ccgctcctaa agctgaaaag      1680
     ctcgatactg ttatcgaatt tgcacttaca gttcaaaatt tacgtgcgac gatagaagca      1740
     tgcgagctct tggagtactc atacaacgtt gcactactaa cagagcttgt cgacaaactt      1800
     ccaccaccac tcaaattaga ttgggcaaaa catcgacgta cactttccac agttcatctt      1860
     tctacgtttg ctgactggct ttatgatctt gccgaaactc tatgcccgat tgcatcactt      1920
     aacgccgcac gcgctgctaa aaatggccca gcttttctca atgctcactc tgaagagctt      1980
     aacgatgcat cagcaatggg aagcaactcc aatgctctga atatatctac aaaaggctgc      2040
     ccagcgtgca aaagcaactg tgtcagcctc gataagtgcc agcggttctt agacctcggg      2100
     tacaacgcaa gatgggcagt ggttaaggac ggcggagttt gtagaaagtg tttgaagaaa      2160
     cacaagggaa gttgcaaagt gcaacagaca tgcggaagaa acgggtgtag tttcaagcac      2220
     catcaattac tccataacag ccaacgtgac gctgctgaac catctggtaa ccagaatcac      2280
     aaaccggacg acgaagtctt aagcaaaaca tcttctaaag agcgggattg caatgctcat      2340
     cacagctccg ctgcaaagac gttatttcgc gtcgtcccag tcatgctata tggacgcgac      2400
     aggatggtta aaacctacgc ctttcttgat gatggctctt cgtggaccct aatggacgca      2460
     gatctgggag cagagctgaa tttggacggt aaacctgcac ctatatgcct gagatggact      2520
     ggagacaaac aacgatatga gaaggattcg aaactggtag atgttgatat atctgggact      2580
     ggagaaaact gtaaaaagta cccgttacga gaagtttata cggttccaaa tctcggtctt      2640
     ttccaccaat cgctatgcat gcatgattta gtgcaccaat accgtcacct taaaggaata      2700
     ccagctgaat cttatgaaga tgtacagcca cgactcctca tcggagtgaa taatgccaat      2760
     cttgggcatc cacagaagag cagggaagga gctatgtacg aaccacttgc tacaaaaact      2820
     cgcctcggat ggatcattca tggtggctca gatagtggtg aattcactgg acatcatagc      2880
     ttgagtgtct gtgactgcag cgaaaacagc aacgaaaatc tgcatcgagc aatgcaagag      2940
     tacttctcac tcgatagtgt aggaatatta aaagcaaata atctcgtaat ctcagcggag      3000
     gatcaacgtg ctcaagcaat cctacaaaca atgtctcgag cggacaatgg tcgattcgtg      3060
     tcgcctctac tgtggaaatt tgatgagttt cgtcttccaa acagcaagcc agtagcacta      3120
     caccgtctac gatgcctcga agctagactt aaaagagagc ctaagctagc ggaagcaatg      3180
     gcacagaaga tgaaagacta cgttgaacaa ggatatattc gaaagttaac tgaagcggag      3240
     ctaaaacaac caaaagcacg gatatggtac ctcccaatat tcccagtttt caacccaaac      3300
     aaaccgggaa aacttagaat tgtttgggac gcagcagcga aatctcaagg gatatctcta      3360
     aacatgatgc tgctcaaagg acctgaccaa ctaacttcct taaattctgt cctttataag      3420
     ttcagggaaa acaaggtggc catttgcgga gacattaagg agatgttcca ccaaacagtg      3480
     atcaaagagg aggatcaaaa ttgtcaacgt tttttatgga gggagcatcc aaacgatctg      3540
     gagccaagca cattcgtaat gcaggtgatg acttttggag catgctgctc gcccagctgt      3600
     gcccagtacg ccaaaaacgt aaacgcgagg gaacatgaag aagagtaccc cgacgctgct      3660
     gaagcgataa ttaaaaaaca ctacgtggac gacatgttag ccagtgtgga gaccgaagat      3720
     gaggctatca agttagctca ggatgtgcga cacgtgcatg ctaaagcggg gtatgagatg      3780
     cgaaactggc tttcaaactc ctcaaccgtt ctcaactcat taaatgaagg caaagaatgc      3840
     gagaaaaacc tgaacctgac atcagggctg gcaacggaaa aaatattagg tatgtggtgg      3900
     tgcacggcaa ccgacacctt cacctacaaa ctgtctccaa aacatgatag cgacctgcta      3960
     gccaggaagc gaatgcctac gaaacgagag atgctgcgta cgttaatggc gatatttgat      4020
     cctttgggac tcatctccaa tctgctaatc ttcctaaaaa ttcttctaca agaagtctgg      4080
     cgatcccgcg ttggctggga tgatcagata cccgatgagc tgaaggataa atgggagttg      4140
     tggctgcgct attttccggc ggtacactcc gtaagcatac cccgttgtta ccgagcaatg      4200
     gtccgcttag aagacgatac gaacgttcag cttcacacct ttgtggatgc tagcgaactt      4260
     gggtatgcaa ctgttatcta tctacggttc gagcagcaag gcaaggtgga atgcatgata      4320
     gtttcagcca aggcaagagt agcaccgttg cagtttgtct caatcccgag actagagcta      4380
     caagcggccg taattggttc cagactggct gaaaccatcg taaactcgct atcgttcaaa      4440
     gttaatcaac gcttctactg gacggattca ctcgacgttc tttgttggat acgatcagat      4500
     catagacgat actcacagtt tgttggattc cgagtgagtg aacttcttga aacgacaacg      4560
     atttccagct ggaattgggt aggttccaaa gacaacgtcg ctgacgaagc aacgaagcaa      4620
     caacaaccga atctggaaaa cagtagcaga tggttcaacg gaccagattt tcttcaccag      4680
     gaccccttat actggccaaa ggaaccagta catagtggaa atacgataga agaactacgc      4740
     gcacatctgc ttcaccaagg aaacacttca gtatccgctg ttgatttcaa ctactttgat      4800
     tcctgggtgc gtctactacg cgtgactgct aggcttctta gatatatggg taaccttcgt      4860
     aaaacagcga ctaagcagga tcgaacaggt ggcccgttgt taaagtcaga actacagtct      4920
     gcctcgtttt acatctacaa gcatatacaa cgagaggtgt attccgagga aataaaccta      4980
     cttacaaact ccaacaagcc ccgtctacca aaatccagtc caatatactc ctttacacca      5040
     tttttggatg aacatggaat actacgaatg ctggggcgaa taggaaactg tgaatttgca      5100
     acaatggatg tgaagaatcc tattatactt ccaaaggatc accatgtaac taggctgatc      5160
     gtgctggact accacgtacg gtatcagcat ggcaatcatg agacggttgt gaacgagctg      5220
     cgacaaaagt accgtattcc aaggctcagg gtgctataca aaagtgtcaa atcgagctgc      5280
     caagtgtgta agaacgaaaa agccaaacca aatcctccac tgatgggaga tctacctttt      5340
     gctagattag cagcgttcac taggccattt tcgttcatcg gtgtggacta tttcgggcca      5400
     ttgtacgtga cagttggaag acgactagag aaaaggtggg gcgtacttgt aacatgctta      5460
     accgtacgtg ccattcacgt tgaaattgca cactcactca acgctgattc atgcatcatg      5520
     gctttgcgta acttcatggc tagacgaggc gtaccgatac gaatctttag tgatcgtggc      5580
     acaaattttg tggcatctag caaagaactc gaagctgctt taagagagat ggatcaggac      5640
     aaggtgatac atgagatcgt gagccctgac acggagtggg aatttctgcc accagcatct      5700
     ccgcacatgg gcggctgctg ggagcgtctt gtccgttcgg taaaggtaaa cctacagaag      5760
     atgaaaccac aacggaacca ctcggatgaa tctctacgca acacgctaac tgaaatcgaa      5820
     aatatcatta attcgcgacc gttgacgttt gtatccgttg atgaccccga tgcttcagta      5880
     ttgactccga accattttct cttggggtcg tccagcgggt tgaaaccagc agcaccctta      5940
     gatgacagcg gacgtagctt gaggcgagca tggcgagcgt cacaagtcga ggcgaacctt      6000
     ttttggcaac gatgggtgcg ttcctacttg cctgaactga ccaaacgctc aaaatggttt      6060
     gaaaaggtca aacctattac catcgatgac attgtagttg tggttgaccc aggactaccc      6120
     cggaactgtt ggcctttagg acgcataatc tcggtcaaga agggcaagga cgaacaggtc      6180
     agaacagcta cggtgcagac caagaacggt atctacgagc gcccagctac gaagctggcc      6240
     attctggacg ttcgacgcga tttacaggta agccaggaca ctggcgtacc tggggagggc      6300
//
ID   BEL-708_AA-LTR repbase;    DNA;    INV; 787 BP.
XX
AC   .
XX
DT   27-NOV-2018 (Rel. 24.03, Created)
DT   27-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-708_AA-I;
KW   BEL-708_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-787
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-787
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 357-357 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 787 BP; 259 A; 148 C; 143 G; 237 T; 0 other;
     tgtaacgacc cctcggtcgg cgcttctcac tacactggag atggtcagct gtggtaacta        60
     caaacttcat tgtgacaggc ggcctgtcac tgaatctacg ctgttcggcg aaataataga       120
     agagagcgga ggaaaataaa acgttgattc atgctagaag ttcgtcaaaa taatcagtca       180
     actattttca acattttcat aggagttctt tagagtttat tgttctatag tgtcgaggaa       240
     tagtcgccaa gtgaattgca caagggtata attgaattta taaaaaataa tcgatgaatt       300
     tgcctaaact aaatactttt ccttaagata accctaaaac ttcgtccgtg ggacaagaca       360
     gctctgcagc ctttctttgc gtattactct tagctagaga tttaatcggt aagatagctt       420
     gaactaggct tcattatttg tcctaatacg atatgtctaa acaggttgaa cccgctcgct       480
     gaaaacacgt aatagtagcg taatacgtta acgctgtagc taggatctcg tccggtaatt       540
     ctaattgctt ctcctaaacg ataatctatt ttgaaactga aatccaatta cagaagctaa       600
     actccaaagt acatagggtg aacagaaaac ttaaacagaa ataagaacac taaacgtaag       660
     ctatgaatat gtacaaacat aagttcaact cactcaaatt gtacttgttt tacaggaatt       720
     ttttaattac atattatttg tcattaaaaa cttggacgtt cttattactg gcgtgctgtc       780
     accaaca                                                                 787
//
ID   BEL-709_AA-I repbase;    DNA;    INV; 6507 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-709_;
KW   BEL-709_AA-I; BEL-709_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6507
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6507
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 419-419 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..6505
FT                 /product="BEL-709_AA-I_1p"
FT                 /translation="MSASGQHSCKKCSRRDSADNMVCCDCCDGWEHYGCAG
FT                 VTDSISDTNRSFVCVRCIEEARGTTLNTIPEDEMMKERMEDVPSKGAIPKK
FT                 SDKQKGEEATGSVVSVSTSASSKRSQRIQMCLNLLEETKKVKMRMLEEEEK
FT                 YLQAKFDLLLRLGDEDDNGSRKSVVSARTKRTRLEKWLNDGQATQVTNKSA
FT                 NRPPKEFSDGQEIKGDANDSALRDKKSMVPTSKTESVLKSLEQVTPIRPAQ
FT                 GTSTPLQTGRAAMTDLISPTTITSTLLPSSIQNQYPHIWPLSEGHARAPEY
FT                 LRLGRQTDAIQSKSKLLFSPATSVVGPVDELAGSGAVKTPATSYVYSQVPL
FT                 GTVTGPEGEHLANTALAFTSNNTVHYPTANHPFSSQYNPPXERAANSARMT
FT                 ATSSAFTWDNRGAPYRDLNDVCVRPQSRLTTNVPACNSTVSVGNQFGVVSQ
FT                 AGNETNQFPSAMTSQVPGSSYVTTIGSSSSAPPPANSLFGVPNYIPSLPTL
FT                 GPTGSQMAARQVMPRDLPTFSGNPEDWPIFYSSFRNTTDVCGYNDAENLAR
FT                 LQRCLRGSALEAVRSRLLLPASVPFVIETLRKLYGRPEVLINSLLKKVRNT
FT                 PSPKADNLNSIVTFGLAVQNLIDHMVISDQQFHLANPMLLQELVEKLPTTL
FT                 KMQWGYYKSAVPNANLTTFNAFMSGLVNLASDLSFNTEISHRNTEKRGDKH
FT                 KEKLFIHAQEPLKAAGPSGISKKDSVDKSMAARGCSYCENTNHQISTCPKF
FT                 NELDIDSRWKAIRQKNLCRSCLIPHRKWPCRSNKECGKDDCRIRHHPLLHT
FT                 GSVTPVVSSANSANRIEHQNHHFNKSFALFRYVPVTIFGNGRQVNLFAFLD
FT                 EGSSSTLLEASIANQLGVDGPVSSLWLSWTGNISREEKESRCVEITICGSR
FT                 QNKKFAIGNVQTVDELQLPKQSFDYESLVKRFPYLKGLPLESYSEATPRMI
FT                 IGLEHVRLLTTLKLREGGDTGPVAVKTRLGWCAYGKGSDTNDSKVQQLNFH
FT                 GSQIVTNQSLHDLMKRFFVAEEATVTRNLESDDDRRALDILEKTTIRKGDR
FT                 FETGLLWRTDHLSFPDSLPMATKRLLSLEKRLARDPELNQKVKEQIAAYEV
FT                 KQYAHIALREELEQADPQRVWYLPLGVVTNEKKPDKIRLIWDAAAKVGGVS
FT                 FNDFLLKGPDLLTSLHDVLLRFRERSVAICGDICEMFHQIRIREPDKQSQR
FT                 FLWRNSSVEPIQTYVMDVSTFGATCSPCSAQFIKNKNAREFSEVYPRAVNA
FT                 IIYNHYVDDFLDCTDTEEEAIELVQNVKAIHATAGFEISKFRSNSAEVLSA
FT                 LGEHYGGQNKLLCSDKQATSERVLGLTWIPSSDVFTFDTTALIPPLMQSGG
FT                 STPTKRQVLQTIMKLFDPLGLISHFIVHGKILMQEIWRSGTNWDEPIAEHL
FT                 LDQWHRWIELLGLLSEVKVPRCFFKGQPSDSLQGLQLHVLVDASEVSYACV
FT                 AYLRLNTTYGGRCVLVASKTKVAPLKPLSIPRLELQAALIGARLSQGIKSA
FT                 LTLSIEKCYYWSDSSTVLAWLRSDTRRYHQYVAFRIGEILSITNVDDWRYV
FT                 PTKLNVADEATKWGPGPSFDPESRWFRGPSFLWESEVHWPSELQNSSTTRE
FT                 ELRTTCQHHNCTVKDPLIDAYRFSNWNRMVKAMAYVHRAVEIWRKRLNQKQ
FT                 RHVVLQSEEILNAEQSLCRETQAQAFPNEYLILKREGECCNIPKSSPLFRL
FT                 TPFLDDQGIIRFRSRIEAAPYAAYETKYPIILPNKHRITFLLVDSYHRRFL
FT                 HANNETVCNEIRQRYYIPKLRTLIKSVSRNCQACKVNKAVPKPPIMAPLPK
FT                 VRLTPFIRAFTYVGVDYFGPLEVKVGRGVAKRWVALFTCLTVRAVHLELTH
FT                 SLSTQSCIMAIRRFVARRGAPREVYTDNGTNFHGAGRRLNEEKQMLQKLSE
FT                 RCATTFTNANTTWYYNVPAAPHMGGPWERMVRAVKTAMKAISEYPRHTNDE
FT                 VLETVLLEAESVVNSRPLTYVPVEGINQESLTPNHFLLYGSSGIKHPAGAP
FT                 IDARGGLRHSWAIAQDMINGFWRRWILEYLPMLTRRTKWFEKVKPLEPGDL
FT                 VVVIDENIRNSWERGRITEVIKGTDGQVRRATVQTSRGVYSRPAVKLALLD
FT                 VSGTNEEATGDRDGNGSSHGRG"
XX
SQ   Sequence 6507 BP; 1868 A; 1517 C; 1563 G; 1558 T; 1 other;
     aaattcttca aagtttttca ttgcagtagt attgcatgag aaacagcaca gcgatatgag        60
     tgcaagtgga caacactctt gtaaaaaatg ctcgaggaga gattcggcgg acaatatggt       120
     ctgttgtgac tgctgcgatg gttgggagca ttacggatgt gctggcgtga ctgactctat       180
     cagtgataca aatcgatcgt ttgtatgcgt ccgttgcata gaggaagccc gtggaactac       240
     gttgaatacc attcccgagg atgaaatgat gaaagagcga atggaagacg taccttcaaa       300
     aggagccatc ccgaagaaaa gcgataagca gaagggcgaa gaagctacag gttctgttgt       360
     ctcggtaagc acgtcagcgt ctagcaaaag gtctcaaaga atccagatgt gtctaaacct       420
     actagaagag accaagaagg tgaagatgcg aatgctggaa gaagaggaaa aatatttgca       480
     ggcgaaattt gatttgttgt tgagattagg agatgaagat gataatggaa gcaggaagag       540
     tgtggtgagc gcacgcacta aacgaactag gctggaaaag tggttgaatg acggtcaagc       600
     aacgcaggta actaataaat ctgctaatag gccgcccaaa gagttctcag atggccagga       660
     gattaagggt gacgccaatg attctgcgct gcgggataaa aaatctatgg ttcctacttc       720
     taaaactgag tcggttttga agagtctgga acaagttact cccattaggc cagcacaagg       780
     aacctcaacc ccactgcaaa caggtcgagc tgcgatgacg gatttaatct ctcctactac       840
     catcacatca acacttctac ctagctctat acagaaccag tatccgcata tctggccgct       900
     atcagagggt cacgccaggg ctccagaata tcttcgatta ggtaggcaaa ctgacgcaat       960
     acagtctaag agcaaactgc tattctctcc agcgacaagt gtcgtcggcc cagtcgacga      1020
     gttagcagga tctggagccg tgaaaacacc agctacatca tacgtgtact cacaggttcc      1080
     tttaggtaca gtgaccggtc cagaaggcga acatctagca aatacagcac ttgcgtttac      1140
     ttcaaacaac acagtacatt accccacagc aaaccatccg ttcagtagtc agtataatcc      1200
     gcctstagag cgtgcagcaa actcagctcg tatgacggca acgagctcag cattcacatg      1260
     ggacaaccga ggtgcacctt atagagatct aaacgatgtt tgtgtgcggc ctcaatcgcg      1320
     attaaccacc aacgtacccg cttgtaatag tacagtttct gtcggaaatc agtttggcgt      1380
     agtgagtcaa gctggcaacg aaacaaacca gtttccctcg gcaatgacgt ctcaggtacc      1440
     aggctcttcg tatgtcacta caattggcag tagctctagt gctccaccac cggcaaacag      1500
     tctgttcggt gttcctaatt atatcccatc actaccaacg ttgggtccaa ccggatcaca      1560
     aatggctgct cgtcaagtga tgccccgaga tttgcctacg ttttcgggaa accccgaaga      1620
     ttggccaatc ttttatagct cgtttcggaa tactaccgat gtgtgcggct acaacgacgc      1680
     tgaaaactta gccagattgc agcgttgttt acgaggaagt gctctggaag ctgtccggag      1740
     tcgactgtta ctgccggcgt cggttccatt cgtaattgag actcttcgaa aactttatgg      1800
     aagacctgaa gtgctgatca actcgttgct gaaaaaggtc cgtaacactc cttcaccgaa      1860
     ggccgacaat ctcaattcga ttgtgacttt cggcctagca gttcaaaatc tcatcgatca      1920
     catggtcatt tccgaccaac agtttcacct ggccaatccc atgcttcttc aggagctcgt      1980
     cgaaaagtta cccacaactc ttaaaatgca gtggggctac tacaaaagtg cagtgccgaa      2040
     tgctaatctg acaacattta atgcgtttat gtcaggttta gttaatttgg cttcagacct      2100
     ttcgtttaac acagaaatta gtcatcgtaa caccgagaaa cgtggggata agcacaaaga      2160
     aaagcttttc atccacgctc aagagccact caaagcagca ggtccctctg gaatttcgaa      2220
     gaaagacagc gtcgacaaat ctatggctgc tagagggtgt tcgtactgcg aaaatacgaa      2280
     tcatcaaata tctacttgcc caaagttcaa tgagttggat atcgacagcc gttggaaagc      2340
     gattcgtcag aaaaaccttt gtcggtcttg cctaatacca catcgtaaat ggccatgccg      2400
     ctcaaataag gaatgtggta aagatgattg ccgtatacgc caccatccac tattgcatac      2460
     tggttccgta acgccggtag tatcgtcggc aaactccgcc aatcgtatag aacatcagaa      2520
     ccaccacttc aacaaatcgt ttgccctctt ccgttatgta cctgtaacta ttttcggcaa      2580
     cggtagacag gtgaatttat ttgccttctt agacgaggga tccagttcta cgctgctcga      2640
     agccagtatt gcgaatcagc ttggagtgga tggaccagta tcttctcttt ggctttcatg      2700
     gactggcaac ataagcaggg aggaaaaaga atccagatgt gtggaaataa ctatttgtgg      2760
     cagtcgacaa aataagaagt ttgctatcgg aaatgtacaa acggttgatg agttacagct      2820
     tcccaagcaa tccttcgact acgaaagcct agtcaaacga ttcccctatc tcaaaggact      2880
     tcctctggaa agttattcag aagctacgcc gcgaatgatt atcggattgg agcatgtgcg      2940
     tctactgact acgttgaaac tccgtgaagg tggagatacg ggaccagtag ctgtaaaaac      3000
     gagactgggg tggtgtgcat atggaaaggg gtcagatacc aacgattcta aggtacagca      3060
     attgaacttc catggtagcc agattgtgac caatcaatcg ttacacgatt tgatgaaacg      3120
     tttcttcgta gcagaggaag ctacagtcac tcggaatctg gagtcagacg acgatagacg      3180
     agctcttgac attcttgaga aaacaactat acgcaaagga gatcgcttcg agacgggcct      3240
     gctttggcga accgatcatt tatcatttcc agacagcctt ccgatggcta ccaagaggtt      3300
     gctatcactg gaaaaacgcc tggcacgtga tccggaactc aatcaaaagg taaaagagca      3360
     gatagcagcg tacgaagtta aacaatatgc acacatagcg ttgagagaag agttggaaca      3420
     agcagatcct caacgcgtat ggtatcttcc tcttggagtg gtcaccaatg agaaaaaacc      3480
     cgacaaaatc cgattgattt gggatgcggc cgccaaagtt ggcggagtaa gtttcaacga      3540
     ctttctgctt aagggaccag atttgcttac ctccttacac gacgtcctgc ttcggtttcg      3600
     ggaaagaagc gtagcgatct gtggagacat atgtgaaatg ttccaccaga taaggattag      3660
     ggaaccggac aaacaatcac aacgtttttt gtggcggaac agttcggtcg agcccataca      3720
     gacctacgtc atggatgtat caaccttcgg cgccacttgc tcaccgtgct cggcgcaatt      3780
     tatcaaaaac aaaaacgctc gcgaattctc tgaggtctac ccacgtgcgg tgaacgcaat      3840
     catttacaat cattatgtgg atgatttcct cgactgcact gatacagaag aggaagcaat      3900
     agaactagtg caaaacgtta aggcgattca cgccacagct gggttcgaaa tcagcaaatt      3960
     ccgttcgaat tctgcagaag tactctcggc tcttggggaa cattatggtg gtcaaaacaa      4020
     actattatgc tctgataagc aggcaacgtc tgaacgcgtg ttaggattga cctggattcc      4080
     ttcctccgat gtattcacgt ttgacacgac ggccctgatc cctccgctga tgcaatctgg      4140
     aggcagtacg cctactaaac gacaggttct ccagacaatc atgaagctgt ttgatccgct      4200
     gggattgatc tcccacttca tcgtccatgg aaagatcttg atgcaggaga tctggaggtc      4260
     cggcacaaat tgggacgagc ctatagcaga acacttgctt gaccaatggc atcgatggat      4320
     tgagctgctt ggccttctct ctgaggtaaa ggtgccacga tgctttttta aaggccagcc      4380
     ttccgattcg cttcagggtt tgcaattaca cgtgttggtt gacgccagtg aagtttcata      4440
     cgcctgcgtg gcgtacttgc gtctgaatac tacatacggg ggacgatgtg tacttgtcgc      4500
     ttcgaagact aaggtggcac ccttgaagcc gttatcaata ccccgactgg aactgcaggc      4560
     tgcactgatc ggagcgcgct tatctcaagg cataaaatct gcccttaccc tgtcgattga      4620
     aaaatgttat tattggtcag attcttcaac agtattagca tggcttcgtt cggataccag      4680
     gcgctaccac caatacgtag cctttcgtat aggtgaaatc ctttccatta ccaatgtaga      4740
     cgactggaga tacgtcccca cgaagctgaa tgtagctgat gaggcgacca aatggggccc      4800
     cggtccaagt ttcgacccgg agagtagatg gtttcgcgga ccttcgttct tgtgggaatc      4860
     agaagtacac tggccatctg aattgcaaaa ttcgtccacc acccgcgaag aattacgaac      4920
     cacctgccaa catcacaact gtactgtgaa ggatcccctg attgatgctt accgtttttc      4980
     aaattggaac cgcatggtta aagcaatggc ttacgttcat cgagcggtcg aaatttggcg      5040
     taaaaggctg aaccagaaac aacggcacgt agttttacaa agcgaagaaa tattgaatgc      5100
     cgagcaatca ctttgtagag aaactcaagc gcaagcattc ccgaatgaat atttgattct      5160
     gaaaagagaa ggcgagtgtt gtaatatacc gaaaagcagc ccattattcc gtctaactcc      5220
     cttcttagac gatcaaggga taatccgttt ccgaagtaga attgaggcag caccctatgc      5280
     agcatatgaa accaaatatc ccataattct ccccaacaaa catcggataa cgttcttact      5340
     cgttgatagt taccatcggc gttttttaca cgctaacaac gagaccgtct gcaatgagat      5400
     cagacaacga tactatatcc cgaagttacg cacgctaatc aaatcagttt ccagaaactg      5460
     tcaggcttgc aaagttaaca aggccgttcc taaaccaccg attatggcac cgttgcctaa      5520
     ggtacgcctg actccattta ttcgtgcatt tacatatgta ggcgtggact actttggtcc      5580
     actagaagtg aaggtaggaa gaggtgtggc caaaagatgg gtggcactct tcacatgtct      5640
     cactgtcaga gctgttcacc tcgagctgac ccacagtctg tctacacaat cttgtatcat      5700
     ggccatccgg cgattcgtgg caagacgagg tgctccaaga gaagtgtata cagacaatgg      5760
     tacaaatttc catggagctg gccgacgact aaatgaagag aagcagatgc tacaaaaact      5820
     tagtgaacga tgtgcaacga cattcaccaa cgccaacact acatggtact acaatgtccc      5880
     agctgccccc cacatgggag gaccctggga gcgtatggtc cgcgcggtta agacagcgat      5940
     gaaggcgatc tccgaatatc ctaggcacac gaacgatgag gtcctggaaa ctgtgctgtt      6000
     ggaagctgaa agcgtggtga attcccgacc actcacttac gtaccagtgg aagggatcaa      6060
     tcaagaatca ttaaccccga atcacttcct gctctatggg tcaagtggga ttaagcatcc      6120
     agctggtgca cccatagatg cacgtggcgg tcttcgtcat agctgggcca ttgcgcaaga      6180
     catgatcaac ggcttctggc gcagatggat attagaatac ttgcccatgc tgacacgtcg      6240
     gacaaaatgg tttgagaaag tcaaaccact tgaaccaggt gatttagtgg tagtgatcga      6300
     cgaaaacatc agaaattcct gggaacgagg acgaatcact gaggtcatta agggcacgga      6360
     tggacaagta cgtcgagcaa ctgttcagac ttctcgaggc gtttactcta gaccggccgt      6420
     gaagctggcg ttgctggatg tgagcggaac gaatgaagaa gcgactggtg accgcgacgg      6480
     aaatgggtca tcccacggaa gggggga                                          6507
//
ID   BEL-709_AA-LTR repbase;    DNA;    INV; 457 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-709_AA-I;
KW   BEL-709_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-457
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-457
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 358-358 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 457 BP; 174 A; 74 C; 78 G; 131 T; 0 other;
     tgttgccaca ctccctgggc acaacggttt ggtggagatg acatccaata ctcgcgatca        60
     acatgacatg tgtcagtgat gaatagaaca aaaaagtaaa atgaaaagaa aacaaactaa       120
     aacttgagca aaacgtgaac tccaaattaa aatattgatt cagcatatta cattataaat       180
     ttgttatcct aggctagttt gtactcatag gtgagtgaaa aaaaatgaaa tttattgaat       240
     ttgttattat aactattcct atgtttgtag tagctgaact gcgatcggtg tcagaaaaca       300
     ccaagaattt tgtaacctca attagtggaa attggatact gaaaaagtaa gctattatac       360
     taaatctatt actacttaaa ctaatggcca aataaaatta tagctttgaa gctgtcgaaa       420
     cgtagctaac aaaacggtgt catcatcttc cgcaaca                                457
//
ID   BEL-70_AA-I repbase;    DNA;    INV; 3893 BP.
XX
AC   supercont1.276;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_AA_;
KW   BEL-70_AA-LTR; BEL-70_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3893
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.276; Positions  188683  192575.
XX
CC   Positions [2914-3495] - Integrase core
CC   'AATAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1504..2280,2284..3585)
FT                 /product="BEL-70_AA-I_1p"
FT                 /translation="MKTLGLTWNPRIDEFVFCQSISSDDTVVTKRQLFSEV
FT                 AKMFDPLGLLAPVTVLAKRLMQQTWAAKLDWDESLTGDLLDDWLQLRKSLV
FT                 NIRDIKIPRPVIGSNYVSLELHGFADASGIAYGACLYVRSVFTNDICIVRL
FT                 LCSKSRIAPLQELTIPRKELCAAVLLSRLVKKVHATLQISFSSVHLWSDSQ
FT                 IVLSWLQKAPTKLQPFVQNRVIEISKDSGHFNWLYVRSKDNPADVISRGQF
FT                 PGSLKNNSLWWNGPSFLQKVYESSTVDLILDALTPEMKPASVTSMPVINCD
FT                 DLPLFKKFGSLRKLQRVLAYVQRFLKNCWVKNPTDRVKDNRSALNTIVIVI
FT                 QRESFSDEMDRIENREPSKRLKALGPFLHNGALRVGGRIQKSQMPFDAKHQ
FT                 YILPKHPLTDLIIRAYHLEHLHMGPSGLLSALRQRFWLLGSRSAVRKITRN
FT                 CVECFRVRPTGVAQYMGNLPQNRVTPSAPFEVSGVDYAGPFQIKQPGRKSA
FT                 MVKAYLCVFVCLVTKSLHLELVSDMSTAVFIAALQRFISRRGIVRELHSDN
FT                 GSNFRGAKAELHELYLMFRENAAINQIELFCQNKEIRWHFIPPNAPEFGGM
FT                 WEASVKSTKYHLKRILKGSPLTFEELYTLLTKVEAILNSRPLFSHSDDPAE
FT                 GEVITPAHFLIGRPMTAVPEPSYEGINQNRLSKWQHIQQMREYF"
XX
SQ   Sequence 3893 BP; 1035 A; 845 C; 900 G; 1113 T; 0 other;
     tattgtggtc catcggaacc agattagtgt gtgaagaaaa aagttcagtc cagaagtgtg        60
     aacaaaagta cagtccaaga gtgattgaat aacagtacag tccattgaac tcaaaagtga       120
     ttgaacagtg tgaatgtttc aaaaactaga actgtggaaa gtgaagaact aaaaccaatt       180
     tacgaaactg atgattgatg gatttcctgt gaacgtcaat atagtcggtg tcagttccac       240
     tcgtagcaag tccaatcgtt tggtcgatgt gaatcttcgt tcacagtaca gtggctatga       300
     aacgactctt aagtgcctgg tcaccgctaa gattacgaac cctttgcctt ctaagtcaat       360
     tgatattgct cagtggaata ttccttccaa tatcaaactg gccgatccta acttccattt       420
     cccagctacg gtagatttac ttattggcat gggtaatttc tttgagcttt tgagggttgg       480
     acatgtcgtg cctgctgagg gccttcccga attacgtgag actgaattgg gatgggtcat       540
     cgctggagaa atccgagaat gaactaccag ctctggcgaa cgtccaacag gtgaattgtg       600
     tttctatcga gtcgcttaat gagacagtca aacgtttctg ggaaatcgag gagatagata       660
     ctagtcctat ttccagagac gaggatgaat gtgaggagtt gtttcgtagg tcttgtcgac       720
     gcgattcaac cggtagatac atagttcagc taccagtccg tgaaaatgtg cacgatcttt       780
     ctgataatcg caacttggcc cttcgtcgtt ttttcttttt tgaaagacgg ttgttgaagg       840
     atccagagct ccatctacag tactccaatt tcattgagga gtataaatcc ctaggccact       900
     gcaaggaaat cactgaagcg aatgatgtcc ctgggaagtt gaagtactac atgccgcatc       960
     atgccgttta caggccgtcg agctcaagca ctaaactgag ggtagtgttt gatgcatcgg      1020
     cgaagccccc atcgggagta tccctcaatg aagtgttgaa aatcggtccc gtcgtgcaga      1080
     gcgatttatt atcgattctt ttgagattcc gtaaacatcc tttccttttt gaagagagtt      1140
     ttctggcgat ctaatccaac tgatccgatc aaggtgcttg aattggttac ggttacgtat      1200
     ggtacttcta ctgctccctt tttggcgacc agatctctga ttcagctaag tattgatgaa      1260
     ggggcagaat ttccccttgc ggctcgtata attcacgaag attgttatgt cgatgatgtg      1320
     ttgtcgggtg cagaaaccat tcaagaagca attgaatgtc gtcaccaact tcaaacttta      1380
     ttgtcgaagg gtggctttcc cgtgcataag tggtgcgcga acgatgaagc gattctacag      1440
     gatgttcctg agtctgagcg ggaaaagcta gttctgcttg acgatctctc cgccaacgaa      1500
     gtgatgaaga cactcggatt aacatggaat ccgagaatcg atgagtttgt gttttgtcag      1560
     tctatttcat ccgatgatac tgttgtgacc aaacgtcaac ttttttccga agtcgcaaaa      1620
     atgtttgatc cactgggact actcgcaccg gttaccgttc tagccaagcg gctgatgcag      1680
     caaacttggg ctgctaaatt agattgggac gaatctctga ctggtgatct tttggatgat      1740
     tggttgcagc tccgaaaatc tcttgtaaac atccgtgaca tcaaaatccc aagaccagtc      1800
     atcggttcaa actatgtatc tctcgagtta catggatttg ccgacgcttc agggatagca      1860
     tacggtgcat gcctgtatgt tcgtagtgtc ttcacaaatg atatttgcat cgtcagacta      1920
     ttgtgtagca agtccagaat tgcaccactt caagagttga ctattccgcg aaaggaattg      1980
     tgtgcagccg tgttgctgtc tcgactggta aagaaagtcc atgcaactct gcaaatctcg      2040
     ttctcttctg ttcatctctg gtcggacagt cagatagtcc tttcgtggtt gcaaaaagca      2100
     ccaacaaaat tgcaaccgtt tgttcaaaat cgtgttatag agatatcgaa ggatagtggc      2160
     catttcaact ggctttacgt tcgttctaaa gataacccag cggatgtaat atcccgcggt      2220
     caattccccg gtagtcttaa aaataactcg ttgtggtgga acgggccttc gtttctccaa      2280
     taaaaggtgt acgaatcgtc aactgtagat ttaattcttg atgctttaac acctgaaatg      2340
     aaacccgctt ccgtcacttc gatgccagtg ataaattgtg acgatcttcc cctcttcaag      2400
     aaattcggat ctctgcgtaa gctgcaacgt gttctggcct atgtgcagcg ctttctcaaa      2460
     aactgttggg tcaagaatcc taccgatcgt gtcaaggata atcgatctgc tttaaatacg      2520
     attgtgatag ttatccaacg tgaatctttt tctgacgaaa tggatcgaat cgagaatagg      2580
     gaaccgtcta aaagattgaa ggcacttgga ccgtttctgc ataatggagc cttgcgagta      2640
     ggtggtcgca ttcaaaagtc tcaaatgccg tttgatgcca aacatcaata cattttgcca      2700
     aaacatccac ttaccgattt gatcattcgt gcataccatc tggagcattt gcacatgggt      2760
     ccttctggtc ttctgtctgc tcttcgtcaa cgcttctggc tgttaggttc tcgctcagcc      2820
     gttcggaaaa ttaccaggaa ttgtgtcgag tgttttcggg tgagaccaac gggtgtagca      2880
     cagtacatgg gcaacttgcc acaaaaccgc gttaccccat ctgcgccatt cgaggttagc      2940
     ggggttgatt acgcggggcc cttccaaata aagcaaccag gtcggaagtc cgccatggtc      3000
     aaggcatatt tatgcgtgtt tgtatgttta gtgaccaaat ctctccactt agaactcgtt      3060
     tcggatatgt cgactgccgt ctttattgct gctttgcaga gatttattag tcggagagga      3120
     atagttcgtg aacttcactc tgacaacggc agcaattttc gtggggccaa agctgagctc      3180
     catgagttat atctgatgtt tcgtgagaat gccgcaatca accaaattga gttattttgt      3240
     caaaataagg agattcgctg gcacttcatt ccgcccaacg ctcctgaatt tggcggaatg      3300
     tgggaagctt ccgttaaaag cacgaaatat catttaaaac gcattctcaa gggaagtccg      3360
     ttgaccttcg aagaattgta tactttgctc acaaaagtag aagcaatcct caactcgcga      3420
     cctctttttt cgcattcaga tgatccggct gaaggtgagg ttatcactcc agcccatttt      3480
     ctaatcggcc gtccgatgac agccgttccc gagccttctt acgaaggtat caatcaaaac      3540
     cgtttgtcca aatggcagca tatccaacaa atgcgggagt atttttgaag atcatgggta      3600
     cacgattacc tcgcgagtct tcaaccaaga gggaagaatt tcgtccgtct tccaaacgtt      3660
     catcccggta cagttgtatt agtggaagat aaaacacttc ctcctcaaca atggaaactg      3720
     ggtagaatta ccaaaatcta cccaggcgaa gataatcttg taagggtggt tgatgtcaag      3780
     gtgggaaatg ctgtatttag acgcccgata accaaacttt ctattcttcc aatagaggac      3840
     aatattccac atgggggggc tccggacagt accgactatc ggccggggga tga             3893
//
ID   BEL-70_AA-LTR repbase;    DNA;    INV; 961 BP.
XX
AC   supercont1.276;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_AA_;
KW   BEL-70_AA-I; BEL-70_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-961
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.276; Positions  187722  188682.
XX
SQ   Sequence 961 BP; 239 A; 224 C; 242 G; 256 T; 0 other;
     tgttcgcaat agcgaaaact caaaacggat gcacacccct attacgagca gcggaacgct        60
     ttcaacatga aacctctacc acacaaatac tcactcttgt ttgtgtgcgt aacaagtcac       120
     gccacctcaa tcggaaacga agccaaccgg cttgcgtccc agcgcagacc agcccagcca       180
     atcagaggga aggacttttt tttgacacta taaaagaggg agtaaccctc atacagttga       240
     tcagttttgt aacgaatttt gaagaataaa catcagtgct aagtacagtg aaagtgtttt       300
     tacgatcgga gagaaaccgt cccagcccag cttggagtgc tgattcctga tcgatgccga       360
     tttgttcctg tgccgtgcca aaaactgctt ggtgccagtg tttcgagagg gtgatcttcc       420
     tttcgctcga tgtgagctcg ctacttgtgg gaaaaatttc acgagctctt ttcagagcta       480
     attaccaaga gttactcaag tagacgacgc tctttgctga gtgaattgga agacatttgt       540
     ggattttcaa tcggcaccaa gcacattctc agtggcagcg agttagcggt agtgccgtcg       600
     gtgtgaaaaa aagtgaacgc gggtttgttg gtagtggacc aactcgtcgt ccattcagcg       660
     tcggtcgcaa gttatttctc cattttgtgt gcgtgtgtgg tagtagtgca ttgccacatt       720
     gtcgcgttat tgtcgaccat ccagcgtcgg tagtcttcgc catcggcagt gagccgaatg       780
     cttcgtgagt atcatcgagt gtgcatgtat tggcagtgtg ccattacgat ctcacgtcat       840
     catcgtcggc agtgagccga ctcgaacgat cagtgtgtgt gtatggctag cagtagtcag       900
     caatgggctg attatttgcc gccacgaatt catcgtcccg aatgttggca atgagccaac       960
     a                                                                       961
//
ID   BEL-70_CQ-I repbase;    DNA;    INV; 6816 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_CQ_;
KW   BEL-70_CQ-LTR; BEL-70_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6816
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5049-5630] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(651..1571,1575..6014)
FT                 /product="BEL-70_CQ-I_1p"
FT                 /translation="MTPSLRSLSKQEHFLNDSLDMLLQLVENYNEQRDKDA
FT                 LEGWRQHAATLYKEFKSIRLQTEVQMDQEKPETDPDNEANLRKIRFDFETK
FT                 YLKVYSLIVVQLENLKKAEQATLNSVPPKSEETPDLTHSRIKLPEVKLPNF
FT                 DGQLIHWINYRDTFVSMIDSNPSLQPIEKFAYLNSSLAPEAKRHIETIDVT
FT                 AVNYSVAWDILVQRFDNKKLIVRAYIECLLSIEPMEKESYESLARVIDEFE
FT                 RNLNMIGKLEVDTKGWSVLLAHMVCARLDDSVLRQWEQFHKSKEVPTYPEL
FT                 IKFLRDHLSILQSLPSKSRSKESTKPDPGRLTKPRFSHAVTISSGSRSCPF
FT                 CKKPPHSFFLCETFRKLPVQQRFDAVKRNSLCINCLSPDHLVKKCTSSSCR
FT                 VCGQKHHTMLHQNSTLRFSNSNPPQKLSSLPAPDQPQTQNQITSNVVPTPQ
FT                 TNMSQHQSEPTLPSTSHVSTTLHGNARTLPATVLLQTAVVKVSDSTGHFVW
FT                 ARALLDPASQLSLMTEQLSQKLKLKRVKANQEIGGVGNTTVVSSYIVEARI
FT                 HSHCTDFFADVSFNVLSGITRELPARALCTEDWNLPTDIVFADPSFYQPGP
FT                 IDMILGIEVYYELIEEGLTRLGPGQPVLQKTVLGWVVSGKIGSHPAPTLSL
FT                 TCLCHSLTLDEQLERFWELESCQSTSTLSVEETQCEAHFTATTTRDESGRF
FT                 VVRLPRRPAVMSTLGSSKEIAIRRYLALERRLTANPSLKESYSKFIEEYRT
FT                 LGHMAEVDEAECSSSSLPTYFLPHHCVLRPESTTTKLRVVFDASCATDTGV
FT                 SLNDCLMVGPVVQQDLFSIVLRFRWYRYAMVSDVEKMYRQVLVHPADRPLQ
FT                 MIVWRDSPHEPLRFYQLTTVTYGTSCAPYLATRCLAELAKVGETTYPEAAK
FT                 VVATDFYMDDLLTGVNDVAAGQQLCSHLQNLLGSAGFCLRKWSSNCPSILE
FT                 NLPKELRDERALFEFNSPTGPIKTLGIQWDIASDRILFTVPDWNKSLVITK
FT                 RVMVSDAAKLFDPYGLIGPVIVIAKLNLQDVWSMQKNWDEPLAEVLQQIWL
FT                 DYRASLEELRNLSVPRCVIPVIYVVSRQLHGFCDASEKAYGANIYLRTETS
FT                 DGKAKTSLLASKSRVAPLGNPKKKKQQKTNLPRLELNGGLLLAHLLVKVIV
FT                 ATNFDGEVFLWTDSEIVLHWLNSLPSRWKTFVANRVSEIQHLTAKAVWNHV
FT                 PGSENPADIISRGMLPGLLIFSVLWWFGPFWLSLPRRYWPATFRSKEESFK
FT                 KEDLEERPVSLAAQTVEPNPIFGKFSSYTHLIRTVALLRRFSYNSNPLNQN
FT                 NRRIGFLRTAELKESMETLVRLVQRETFPDELAALADERSVEPHSKIKNLA
FT                 PFLSDGIIRVGGRLGHAPVSEGRKHPILLPAKHPFTDLVVRYFHEKMLHAQ
FT                 PQLLIASVRSQFWPLRIRNTARRIVHTCVSCFRCRPTNLEQLMGDLPEERV
FT                 TPTLPFLSTGVDLCGPFKYRHPELRNKFTICYVAVFVCLTTKAVHVEMVGD
FT                 LTTGAFLASLRRFVARRGKPRLIECDNAQNFKGALNELVVLREQFNSQQHQ
FT                 HDVVRAAAEDGIEFKFIPPRSPNFGGLWEAAVKSLKTHLRTVLGNSVLTAE
FT                 QLNTLLTQVESCLNSRPLTPLSNDPQDFEALTPGHFLIHRPLTAIPEPSLE
FT                 EVPQNRLDRWQVVQEFLRRIWKRWTTDYLSGLQQRTKWTSKKDNIRIGTMV
FT                 LVKDENRPPLHWHLGRVVHVYSGTDGNVRVVDIRTKNGRFRRAISKICILP
FT                 IHQPSQPGESDLADDL"
XX
SQ   Sequence 6816 BP; 1781 A; 1769 C; 1642 G; 1622 T; 2 other;
     tttttttggt ccttgctacc cggattaatc gcgtcgcgag tgaaacggac taatcgtgtc        60
     gtaaaatcga cgatcaatta ccgtcgcggt acaaattgat cttgtgaaaa agtggtctga       120
     acattttgtg ctaccaggaa gacataaaaa gtgatctccg cttgatcgga aaattgaaga       180
     aagatccaga aagaattgcg gcgagctgca gatcatctgg accagatcgg cgtgggatcg       240
     agaacgagag ttgctgatac gaaacgtggt cgaggttggc gtggttggct attgttcttc       300
     gggaacaaaa gaggctaatt acgagggcac attgatcgtc gtcgatcgta agtacgcatg       360
     catgaaagca gtgaagctgc tgattgatag attggtgaaa gattcgcatg aaaaattggc       420
     taaaactacg aattgaacga cgctaattga ttgccctgaa cgacttgatc tgatctgcgc       480
     gcttcggagg gatttcttga tccatgcaca cgtggtttgg tagttagagg ttagagattg       540
     gttcgctgct catcgtaatc gaagttgtgg tagtgcattg acgaggtggg ttaacttact       600
     gcagtaggca aaatttgggg acaaaactgg cattcgcaac actttccgaa atgactcctt       660
     ctctgcggtc actttcgaag caagagcatt ttttaaatga ctcgctggac atgctactac       720
     aactggttga gaattacaat gagcagaggg acaaagatgc gctggaagga tggagacagc       780
     atgcggctac tctctacaaa gaatttaagt cgattcgctt acaaaccgaa gtgcagatgg       840
     atcaagaaaa gcctgaaacc gaccccgaca atgaagcaaa cctgcgcaaa atccgttttg       900
     actttgaaac caaatatctc aaggtgtaca gtctgatcgt tgttcaactc gaaaacttga       960
     aaaaagcaga acaagccacc ctgaactctg tgccccccaa atctgaggaa acccctgact      1020
     tgacgcactc tcggattaag ttaccagagg tgaaattgcc caactttgat ggacaactga      1080
     tccattggat caattatcgg gacacctttg tcagcatgat cgattcaaac ccttctcttc      1140
     aaccaatcga gaagttcgct tatctgaatt cgtcgctggc tccagaggca aagaggcaca      1200
     tcgagaccat tgacgttact gctgttaatt attctgtcgc ttgggatatt ttggttcagc      1260
     gtttcgacaa taaaaagctc attgttaggg cctacatcga gtgtctcctt agcatcgaac      1320
     ccatggaaaa ggagtcctac gagtcgttag cacgtgtcat cgacgagttc gagaggaatc      1380
     tcaacatgat cgggaagctg gaagttgaca ccaagggatg gagtgtgttg ctggcgcaca      1440
     tggtgtgcgc acgactggat gactcggtcc tgaggcagtg ggagcagttt cacaagtcca      1500
     aagaagttcc tacttatcct gagctgatta agtttttgcg cgatcatctg tctattcttc      1560
     agtccctccc amcgtcaaag tcgcgttcga aagagtctac taaacctgac ccaggtcgtt      1620
     tgacgaaacc aaggtttagt catgcagtca caattagtag cggttcgaga agctgtccct      1680
     tttgcaagaa gccaccccac tcattcttcc tgtgcgaaac cttccgcaag ttgccagtcc      1740
     agcaacggtt cgatgctgta aaacggaact ccctctgcat aaattgcctt tcgcccgacc      1800
     acctcgtcaa aaaatgcact tcgagttcct gtcgtgtttg cggacaaaaa caccatacaa      1860
     tgctgcacca aaattccaca cttcgtttct ctaactctaa cccacctcaa aaattgtcgt      1920
     cgttgccagc acctgaccaa ccacaaactc aaaatcagat cacatcgaat gtcgttccta      1980
     ccccacaaac caacatgtcg cagcatcaat cagaacccac tttgccaagt acctcccacg      2040
     tatcaaccac tttgcacgga aacgcacgaa cccttcctgc taccgtgctg ctgcagacag      2100
     ctgtcgtgaa ggtttcagac agcactggcc acttcgtgtg ggctagagct ctgttggatc      2160
     cagcatctca actgagcctg atgacggagc agttgtcgca gaaactgaag ctgaagcggg      2220
     tgaaggcgaa ccaggagatt ggcggcgttg ggaatacaac tgtcgtctca tcttacatcg      2280
     tcgaagctag gattcactcc cattgtactg actttttcgc tgacgtctcg ttcaacgttc      2340
     tgtccggaat cactcgagaa cttcctgcta gagcgttgtg tacagaggac tggaacctac      2400
     caacagatat cgttttcgct gatccttctt tctatcaacc tggccctatc gacatgatat      2460
     tgggaatcga agtctactat gagctgattg aagaaggact aactcgtctc ggaccaggac      2520
     aacctgttct tcaaaaaacc gtcctggggt gggtcgtgtc cggaaaaatt ggatcccatc      2580
     cggcacccac gctcagtctg acgtgcctct gtcatagcct cacgctcgac gaacaactcg      2640
     aacgattttg ggaattggaa tcttgccagt ctaccagcac gctgtccgtt gaggaaactc      2700
     aatgcgaagc gcattttacg gcgacaacca ctcgtgacga atccggacga ttcgtggtgc      2760
     ggctaccaag gaggcctgcc gttatgtcca ctctgggaag ttccaaggag atagcaattc      2820
     gtcggtatct cgcccttgaa cgtcgtctga cagcaaaccc ttcgctgaag gaatcctact      2880
     cgaagttcat tgaggagtat cgtactcttg gacacatggc agaagtcgat gaagcagaat      2940
     gttccagctc aagcttaccc acctattttt tgccccacca ttgcgtactc cgacctgaaa      3000
     gcacaactac aaaattgcgc gttgtttttg acgcatcgtg cgcaacagac accggagtgt      3060
     cgttgaatga ttgcttgatg gtcggtcctg tggtccaaca agatctgttc tcgattgtgt      3120
     tacgctttcg gtggtatcga tacgccatgg tatctgacgt cgaaaaaatg tacaggcaag      3180
     tcctggtaca tcctgctgat cgtccgctgc agatgatcgt gtggagagat tctccccatg      3240
     aaccgcttcg cttctaccag ctgacgactg taacttacgg gacgtcctgc gccccatatt      3300
     tggcaacaag gtgtttagcg gaattggcca aagttggtga aaccacgtac cccgaagccg      3360
     cgaaggtagt tgccacagac ttctacatgg atgacctgtt gacgggtgtc aacgacgtcg      3420
     ctgcaggaca gcagctttgt tcccacctgc aaaacctact tggctctgcg ggattctgcc      3480
     tgcggaaatg gtcatcgaac tgtccgtcga ttctcgagaa tctacccaaa gagttgcggg      3540
     atgaaagagc gctgttcgag ttcaactcac caactggtcc catcaaaacg ctcggaattc      3600
     aatgggacat cgcttcagac cgtattctct tcaccgtacc ggactggaac aagtcgttgg      3660
     tcatcacgaa acgggtgatg gtgtcggatg cagctaaact tttcgatcct tatggattga      3720
     ttgggcccgt tatcgtgata gcgaagttaa acctgcagga cgtttggagt atgcagaaga      3780
     actgggacga acctctcgcc gaggttctgc agcaaatttg gttggattat cgagccagtc      3840
     tggaagaact acgaaacctg tcggttccac gttgtgtcat tccagtaatc tacgttgtct      3900
     ctcgccaact gcatgggttc tgcgatgcgt ctgaaaaggc gtacggcgcg aacatttatc      3960
     tgcgtaccga aacatcggat gggaaggcca aaactagctt acttgcgtct aaatctagag      4020
     ttgctccact gggcaaccca aagaagaaaa agcaacagaa gaccaatctt ccccgactgg      4080
     agctgaatgg cggactgctg cttgcacacc ttctcgtaaa ggtgatcgtc gctacgaact      4140
     tcgacggaga agtgttcctg tggacggatt cggaaatcgt acttcactgg ttgaactccc      4200
     ttccctcgcg ctggaaaacc ttcgtcgcaa accgtgtatc cgagatacaa catctgaccg      4260
     ccaaagctgt gtggaaccac gtgccgggct ctgagaatcc ggcagacata atttcgagag      4320
     ggatgctgcc tggtcttcta attttctccg ttctctggtg gttcggacct ttttggctct      4380
     cgttacctcg tcgctactgg cctgccacat ttcgctcgaa ggaggaaagc ttcaaaaaag      4440
     aagacctgga agaacgccct gtatcgctag ctgctcaaac tgtcgaacca aacccaatat      4500
     ttggaaaatt ctcgtcttac acacacctaa ttcgaaccgt cgccttgctc aggcgtttct      4560
     cgtacaactc gaacccactg aaccagaaca atcgtcgtat cggattctta cgaactgccg      4620
     agcttaagga gtcgatggaa accttggttc gactagtcca gcgtgaaacc tttccggacg      4680
     agttggcagc gttggcggat gaacgatcgg ttgaaccaca ctcgaaaatc aagaacttgg      4740
     ccccgttctt gtcggatgga ataattcgtg tcggtggscg gctgggccat gctccagtct      4800
     cggaaggaag gaagcatccg atcctgttac cagcaaaaca cccattcacc gatctcgtcg      4860
     ttcgctactt ccacgagaag atgctccatg cccaacctca actcctgatc gccagcgtcc      4920
     gttctcaatt ctggcccttg cgcatacgca acacagctcg gaggatcgta cacacttgcg      4980
     tgagctgctt tagatgtcgt cccacaaacc tggagcagct aatgggcgac ttgccggaag      5040
     aacgtgtaac accaactctg cctttcctga gcaccggagt cgatctctgt ggaccgttca      5100
     aatatcgcca tccggagctg agaaacaagt tcacgatctg ctatgttgct gttttcgtct      5160
     gtttgactac aaaagcggtg cacgttgaaa tggtcggaga tcttacaact ggagcattct      5220
     tggcttcact tcgtagattc gtagcccgac gcggaaagcc gcgcctcatc gagtgcgaca      5280
     acgctcagaa cttcaaaggt gcactcaacg agcttgtggt gcttcgtgag cagtttaact      5340
     cccagcagca tcagcatgat gtcgtacgcg ccgcagcaga agacggcatt gagtttaagt      5400
     tcatcccacc gcgctctccg aatttcggag gcttatggga agctgcggtt aaatccctga      5460
     agacccacct gcgaaccgtt ttgggcaact ctgtcctgac cgctgaacaa ctaaacactc      5520
     tgctcactca agtcgaaagt tgtctaaatt cccgtcctct cactcccctt tcgaacgacc      5580
     cgcaagattt tgaggccctg acgccggggc attttctaat ccaccgtccc ctgacggcca      5640
     tacctgaacc atccctcgaa gaagtgcctc aaaacagatt agatcgttgg caagtcgttc      5700
     aggagtttct ccgcaggatt tggaagcgct ggaccacgga ttacctatcc ggtctgcagc      5760
     agcgaactaa atggacgagc aaaaaggaca acatccggat cggaaccatg gttctggtaa      5820
     aagacgaaaa ccgcccacct cttcactggc acctgggccg ggtcgtacac gtctacagcg      5880
     gcactgatgg gaacgtacga gtggtggaca tccgaacgaa gaacggtcgg ttcaggcgcg      5940
     ctatctccaa gatatgcata ctaccgattc accagccgtc gcagcctgga gaaagcgacc      6000
     tcgctgatga cctctagaag ttgccaccca ctctaccatc gcagtttcaa actgcgcaac      6060
     gaccgagagc ccaagggctc tcggttcatg taagtagtat taatcaatga attcgcaaaa      6120
     aactcaagga atgtttatcc cccatcatgc ccgccggaca caccgagctt caacccacaa      6180
     ccatggctcc aaccgacaag aagtaccaac aaccaactcg cttaatcgtc gatgcatcgg      6240
     ccttccatcg cagctacgag ctgcgcatcg accgagggcc ctagggctct cggttccctg      6300
     taagtagttt tgtttaatga accttcaaaa agcttaagga attttcgtcc cccatcatgg      6360
     ctgcctgacg tcacgagctc caaccctcaa ccatgagctc caagcgcttc aaccgtcaac      6420
     cacagcgctc gccgtctcat caatgggtcg ctgatcgatt gatagacgag cctggtacca      6480
     ggaaagcagg agagcaggag agcagtcaac aatggtgcgg agcagctgac ttcgtatatc      6540
     aacaaaccga ctggtcacgt gaccgatcgg ctgattgctg tggagcaacg aacaacgaga      6600
     cagctgaccg acgattgttg ctgaacaaaa ggagaacgaa gaacagctga tcgacccgat      6660
     cagctgactg atgtcaacag agagccgaac aaacacgttg ttgtaacgaa gaagaagatc      6720
     gaactaaaca gagaaaataa cgtacacata tttgtagtaa taggtctaac agtagatttt      6780
     aggttaaaag gtaggctttt aacggtggcc ggcata                                6816
//
ID   BEL-70_CQ-LTR repbase;    DNA;    INV; 265 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_CQ_;
KW   BEL-70_CQ-I; BEL-70_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-265
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 265 BP; 69 A; 59 C; 38 G; 98 T; 1 other;
     tgttaaagat aagaacccta ttgctaactg ttatatttaa gattctctcg cggcacaatt        60
     gcgtttactc tttccgctca gatttatctc tcgatttcgc tatatattgc ccagcaaacc       120
     acattcagtc ctcttagtac gaaatatatc gctataccag acggagatca tctccatttt       180
     cgttttcgtc gggaataaaa ttttagtagt tttttwtact ctacattcct cgcgtgtgat       240
     ttttagttta atcctaatcc gaaca                                             265
//
ID   BEL-70_DTa-I repbase;    DNA;    INV; 3307 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   06-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3307
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 5'-end truncated.
XX
SQ   Sequence 3307 BP; 833 A; 830 C; 811 G; 833 T; 0 other;
     ggtggctggc tccgtttgtt gtccgtgcaa agttgtttat gcaagaatta tggctaagag        60
     aattggcctg ggatgacgtg tggcccgtcg ccctagccga agagtggcta tctttcctcc       120
     aaagctttcc ggagatcaat aaaatccgaa ttccgcgatg gttgcaaacg tgcccaaaag       180
     cgagagcaca aatccacggt ttctgcgatg cttcacaacg cgcctatggg gcggccatat       240
     atgttcgggt agagacgcct caaggcatag tatgcaatct ccttgcggca aaaacacggg       300
     tcgccccggt gaaaactatt tcactgccac gacttgagtt atgtggggca gtacttttag       360
     ccgatttgac agcagccatt gttccgcaac ttccactcga cgtcaccgaa aagtatttct       420
     ggacagactc gacgatcgtc ttggcgtggt tgaacaagcc tccatgtcaa tggactactt       480
     tcgtagccaa cagagtggct aaaatagctc gaacggacag gctagacaac tggcgccatg       540
     ttcgctcaga ggataacccc gcggatttgg caagtcgggg ggtatgtgcc acagagttgg       600
     tgactaacga aatgtggtgg catggtccag tgtggttgaa gtcaccgcaa agtagctggc       660
     gagaatcgat ggtgtcggct ccagacacgg cgatcgaaca acgctatgtg aaggttcatg       720
     ttgctattcc tagcccactt agtccatgag atctcatttt acggttctcc gacctgggga       780
     gggcactgca cgttacggca tatgctattc gctttataaa gggctgtcga aatacatgcc       840
     gatcgtcctc attagagctt acagggtcag agctcgcaga ggttttggaa acgataactc       900
     ttgcaactca aaaagcttgt tatcaggatg aacgtcggct ttttgagaaa aaacagcatc       960
     acccattgtc cagcccaatt gtaaatataa atcctttcat tgacaagcta ggtgtgctac      1020
     gagcgtgtgg acgggtccaa gcatcggact ccatgtctta tgacgaacgg tatccgattt      1080
     tagtgtcagc atccacccat ttggctcgtt tgctggttcg cttcacacac aaaatatccc      1140
     tacatggtgg gaaccagctc gtcgtaggtc taatacgctc aaaatattgg attccaagac      1200
     tacaaaatat tgtaaagtcc gtcatccgcg catgcaaagt atgcattatc tacaagaaga      1260
     aggtgcaatc acaactaatg ggcgatcttc caacagagcg agttaccttt tctagacctt      1320
     tcacgtacac gggtgtggac tttgcgggtc cgttcgaaat taagagtttt actggccgcg      1380
     cgtgtcgtat aagaaagggg tatgtgtgtg tatttgtatg tttcaccaca aaggcaatcc      1440
     atcttgaagc aacatccgat ctatcctcca aagcatttct tgctgctttt ccattccgac      1500
     aatggtaaaa actttgtcgg ggcagctaga gccttgaact ctgattttct tgaatccaca      1560
     aagaggttaa ttgttgatac ataccagcat caacagctta agtggcgttt tatccctccc      1620
     ggtgcgcccc acatgggcgg gctgtgggaa gcgggagtga aaagctttaa agctcacttt      1680
     tataaggcta tggctacgtc taagtagacg tttgaggaag tcgcgacgct acctttgtaa      1740
     agttgaagcc tgtctgaatt cgaggccaat tgcaccaatg tctgaggacg caacggacca      1800
     gctggcgctg acacctggcc attttctcat tggagcaccg ctactctcgg tcgctgagcc      1860
     ggagattaag gaaggggctg cctcaatcct aaatcgttgg caacgcctca aggctcagag      1920
     ccaacaactc tgtgtcagat ggaagcgaga gtatttaagc gaattgcata agcgaaacaa      1980
     gtggcgtttc ccgtctagga atgttgaggt gggcgatctc gtcgtcgtaa aagaagacaa      2040
     ccttccctca aacgaatggc gggtggctcg agtccagcga atctacatgg gaaacgatga      2100
     caagacccga gtggtcgatc taaccacgtc gcggggagtc attaaaagac cgatcactaa      2160
     aactatttgg cttccaatgg aatcccagat cctgtcctcc tactcgtcaa tcatttccag      2220
     tcaataacca atcatcaatt aattcatcat tcatttcact cattcatcag tcatttcact      2280
     cattcatcat tcattttact cattcatcat tcatttcatt attcagatca tcctgcatcc      2340
     atccggtttt cgtcctcaga tcaccatgac gccacgccca cgccgagagc aggtacaagc      2400
     caatgagcgc aaatgtactc gaggtattca ctcctaccgt tgccgagttt gccgaggcgt      2460
     ccaccctctc aagaagtgcg tacggtttct gagattgacg atggagaagc ggctcagggc      2520
     agtactaatc aatgggtact gtgctaactg cctggctcat gagcattcgg gtgaattctg      2580
     ccgaagtggt aacaaatgcc gtcaatgtga cggggcccat catacactgc tacacatgcg      2640
     gaagcttcca cgatctaggt ccagatcgcc ctatactggg tcacggtcac cccgtcatac      2700
     aagaagcccg acatcggtga ctcaatcgcc gttccagcct ggaaccgggg tttcgtcatc      2760
     gtccctgacg gctttgttac aacacagaag cccccgagtg tttcccaccg catctatcct      2820
     ggtccacaat ggggcgacac agttcgatac gagagcgctc atcgatcctt gtgagccggt      2880
     gtctcggatt aacgcctcca tggcacaagc atttcacctc gagaagatct cagttggcag      2940
     cgaggaagtg tgtagcgcgg ttattaagtc cataatgaca ccagaattcc gtctagaagt      3000
     ttacttgaag attgacccgc atctcagcca tcgcacgcca tctactccaa ttgatctgcg      3060
     gattcgtcag aagttcaagc acctaactct ggctgatgag cggtttgatc gcccatccac      3120
     tgtggctatc gttttaggag ctgacgttta ttcggatgtt atatgcgcag gagtcttgcc      3180
     gagtacagac ggtctgccag tcgctcaaaa ccccgtcttc ggttggacgc tttcgggagc      3240
     atgtcgatgc tgaagatatg aggcgccaac ggatgcattg ttgcaacaca ttgcaaggcc      3300
     ggcggaa                                                                3307
//
ID   BEL-70_DTa-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   20-AUG-2021 (Rel. 26.10, Created)
DT   06-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-70_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-207
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 207 BP; 57 A; 37 C; 50 G; 63 T; 0 other;
     tgttcgcgtg tggaaatcgc atattaatcc aataatgacc gattccgggg ttccaatttt        60
     gcgataacgt tttgtggatt tgttatcttg gcttgaagcc gggtttattg ttgagtcaat       120
     tcagtgaagt tgagctaacg tgttctcaaa ttgggcagta cagaattgaa agaggaacgt       180
     ctaacaacca agaccttgcc acagaca                                           207
//
ID   BEL-710_AA-I repbase;    DNA;    INV; 5971 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-710_;
KW   BEL-710_AA-I; BEL-710_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5971
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5971
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..5969
FT                 /product="BEL-710_AA-I_1p"
FT                 /translation="MSSKHSKAGHRSEAEAAATNIQSVGEIPTDKVVGSTT
FT                 QVNVDKAVSEYRTTGTIPKNLPNKPGSIASLPRRNPPRDARPNRHSSCQLC
FT                 DGPDNMNMVQCDGCKGWFHCECVNVTEENENESWSCAKCVALIRQSLAPPA
FT                 VNENSEGQKQHSQNSSQRSRCSGKSMQSEARRRLKLQLLKIEEEKRLEKEY
FT                 LEKKYEALLEFGSESSTVVSGCESIFDNASKIEQWMADTDRFGVDVDSGLA
FT                 DEVDGPVAINSRKPEEHSARNLVYDVQRSEYLQGQQQLPAERGLQFATSPV
FT                 SRNHQAQRAHLTQQSHTRTETIIQPNQFIPEQRSTPMGYDRQRIMAQPVQP
FT                 VGEDMICVLNRSQLAARQAVPKELPEFSGNPEDWPLFFSIFDSSTQMCGFS
FT                 NEENMLRLRKCLTGRALEAVRCRLLHPSNVTGVMSTLKMLYGRPEAIIQAI
FT                 VKKVRALPTPNIDRLETVVNFALTVENLVATIQACGVNDFVYNASLRYELV
FT                 ERLPSSLKLDWARYSRNTPNPNLLDFSTWMYATAEDASAVMISATGDSKSR
FT                 SNKKDGFLNVHAEAESSDSQLHVVSSRIKHETFNETEKQCPICKGDCQNVA
FT                 KCERFAEFSIDSRWAAVRECKLCRKCLRKHNGSCRQQKPCGTNGCTYLHHH
FT                 LLHSTARQQANGTETIATNTVVPAETVQQSCNIHQNQSKLLFRILPVFLHG
FT                 PSKTVRTYAFIDDGSELSLMEQNLADELGVKGPKTSLCLKWTGGSQRLENS
FT                 SQKVSLQISSSKDLSKRYQMSSVQTVQSLQIRPQTLLYADMQDTYRHLSGL
FT                 PIESYENACPRILIGLDNLNLGHPLKSQEGRSHEPIAVKTRLGWTIYGSCS
FT                 PGESATHSINFHSIEKCQCNQYAAEDLHQAVKSYFSLESIGIVKPEKLLLS
FT                 QDDQRAQSLLESLTKYQDGRYESGLLWKYENVRLPESKTMALKRWECLDRR
FT                 MNNDQQLAAVVRAKIEEHVEKGYVRKLTDEEVQAEYPRVWHLPMFPVVNPN
FT                 KPGKTRLVWDAAATAHGVSLNSVLLKGPDLLTSLLSVLIQFREYKVAVCGD
FT                 IREMYHQIQMRNTDQHCQRFFWKENMTDAEPSTYIVQVMTFGACCSPSTAQ
FT                 YVKNLHASKFLQEHPAAVEAILKRHYVDDMLVSVEHEEEAIQLTQDVRKIH
FT                 ASAGFEIRNWACNSSVVLNRLNETSKAERNFSGDSSVEKILGMWWNPFLDH
FT                 FTFKISKRIDEILLSGSRRPTKREVLRTLMMVFDPLGLIGHFLMVLKTLLQ
FT                 EIWRSSIGWDETINDQHFEKWSTWCAVLPKITGLQIPRCYRSLTSVYESNE
FT                 TQLHIFVDASEAGFAAVAYLRFQEGPNIECALLGSKTRVSPLKFLSIPRSE
FT                 LQAAVIGVRLADTICRSLSIKVKQRFFWTDSKDVLCWLNSDHRRYSQFVAF
FT                 RVSEVLETSDQKEWHWIPSKQNVADEGTKWSQNIDLSATARWFSGPKFLWK
FT                 SAEHWPISKYPIGSTSEELRPHLLLHTQVTQCVIDYHRFSDWQKLLHCTAY
FT                 VLRFIRNLKLCTEKNDRITGPLRRQELRDAENYLHIEAQKDSFTDEIAILS
FT                 RDRASENPDKHLPRNSPLFRQGVFLDETNIIRVRDFHKRFNHQNHQTTINE
FT                 VRQRYRVPKLKVAYREVRKECQKCKNDQASPHPPIMSDLPPQRLAAYTRPF
FT                 TYVGIDYFGPMIVTVGRRSEKRWGVLATCLTVRAIHIELAHTLTTDSCILA
FT                 IRNIMARRGTPAVIFSDRGTNFQGASKELAEAMQNLNQNQIMKEFTTANTE
FT                 WTFIPPASPHMGGAWERLIRSVKTNLSKLQWGRLPTDEVLNSTLLEIENVV
FT                 NSRPLTDIPIDNDESPVLTPNHFLLGSSNGLKPWVPFNDSPFTLRNSYKQS
FT                 QVMANEFWKWWLRDYLPVITRRTKWLTKEDPIKVNDVVIIVDPKAPRNSWP
FT                 LGRIIATKLGLDGQVRSATVQTRHGIYERPSVKLAVLDVGVRDHDASGRPY
FT                 AHSGG"
XX
SQ   Sequence 5971 BP; 1744 A; 1435 C; 1437 G; 1355 T; 0 other;
     ttttacaaat tcatttaccg aattaagaga tgtcatcgaa gcattccaag gctggacacc        60
     gcagcgaagc ggaagccgca gcaacgaata ttcagtctgt aggcgagatt ccgacggaca       120
     aggtagtagg atcaactact caggtaaacg tagataaggc agtgtctgag tatcgaacga       180
     caggtaccat tccaaagaat ttaccgaata aacctggtag tatcgctagt ttgcctagac       240
     gcaatccgcc gcgagacgcg cgtccgaatc gtcattctag ttgccagctg tgtgatgggc       300
     cagataatat gaacatggtt cagtgtgatg ggtgcaaagg atggtttcat tgtgaatgtg       360
     tgaatgtaac ggaggaaaac gagaatgaat cctggagctg tgccaaatgc gttgccctta       420
     ttcgtcaatc gttggctccc cccgctgtga atgaaaactc agaaggtcaa aagcaacatt       480
     cacaaaattc gtcgcagcga tctaggtgta gtgggaaaag tatgcaaagt gaggcaagaa       540
     ggaggctaaa gctgcagctg ctgaaaatcg aagaagagaa gaggctggag aaggaatacc       600
     tggagaagaa atatgaggcg cttctagaat ttggtagtga atcgtcaacg gttgtgagtg       660
     gctgtgaatc gatttttgat aacgcttcga agatcgaaca gtggatggcc gatacagatc       720
     gtttcggtgt cgacgtggat tccggtctag cggacgaggt agatgggcca gtggcgatta       780
     actcgcgtaa gcctgaagag cattccgctc gaaatctcgt atatgatgtt cagcgatcag       840
     agtatctaca aggtcaacag caactaccgg cagaacgagg tctgcagttc gccacttccc       900
     ctgtttcgag gaatcatcaa gcgcaacgag cgcacctcac acaacaatcg catactagga       960
     cagagacaat catccagccg aaccagttca ttccagagca gcgttcaacg ccaatgggct      1020
     atgaccgtca acgaataatg gctcagccag tgcagcccgt cggtgaggac atgatctgtg      1080
     ttcttaaccg aagccagtta gccgctagac aagcagtccc aaaggagctc ccggagttta      1140
     gcggaaatcc ggaagattgg ccccttttct tctcgatctt cgacagttca actcaaatgt      1200
     gcgggttttc caatgaggag aacatgttgc gcctccgaaa atgcttaaca ggacgggcgt      1260
     tagaggcagt cagatgtcgt ctgcttcatc catctaacgt cacaggggtg atgtccactc      1320
     tgaaaatgtt atacggcagg ccggaagcga taatacaagc gatagtgaag aaagttcgag      1380
     cccttccaac accaaacatc gaccggctag agacggtggt caacttcgcg ctcacggtgg      1440
     agaacttggt tgccacaatt caagcttgtg gagtaaacga tttcgtctac aatgcatcat      1500
     tgcgctacga gctggtagag aggttaccgt catccttgaa gctagactgg gctaggtact      1560
     ccaggaacac gccaaaccca aacctgttgg acttcagcac ctggatgtat gcaacagcag      1620
     aagatgcaag cgcagtaatg atttcggcta ccggagattc taagtcacga tccaataaga      1680
     aggatgggtt tttgaatgtg cacgcagaag ccgaatccag tgatagccaa ctccatgtgg      1740
     tgtcatcgag gatcaaacat gaaactttca acgaaacgga aaaacagtgc ccgatctgta      1800
     aaggcgattg tcagaacgtc gcaaaatgtg agcgctttgc agaattcagc attgattcta      1860
     gatgggccgc tgttcgtgaa tgtaaattgt gtcggaagtg cttgcggaaa cataacggct      1920
     catgtagaca gcaaaaaccg tgcggcacga atggttgcac atatctccat catcatcttc      1980
     ttcactccac tgcaagacaa caagccaacg gaacggaaac gatagccact aacactgtgg      2040
     taccagccga aacagttcag cagagctgta atattcacca aaatcaatcg aaactacttt      2100
     ttcgaattct cccagtattt ctccacggac catctaaaac agtgcgaacc tacgcgttta      2160
     tagacgatgg atccgaactt tccttaatgg agcaaaactt ggcagatgaa ctgggtgtga      2220
     aaggaccgaa aacgtcgctg tgtctgaaat ggaccggagg ttcacaacgc ttggagaact      2280
     cctcgcagaa agtaagtctt caaatatcca gcagcaagga tctgtcaaaa aggtatcaaa      2340
     tgtcatctgt acaaactgta cagagcctac aaatacgccc gcaaacactg ctgtatgctg      2400
     acatgcaaga tacgtatcgg cacctctccg gcctgccgat agaatcatat gagaacgcct      2460
     gcccaaggat tctgattggt ctggataatc tcaatttggg tcacccactg aaaagtcaag      2520
     agggtcggtc acatgagccg atagccgtca aaacacggct cggatggact atctacggga      2580
     gttgctctcc aggcgaaagt gctacgcatt ccataaactt ccattccatc gaaaaatgtc      2640
     agtgcaatca gtacgctgcg gaagatcttc atcaagcagt aaaaagctac ttttcgcttg      2700
     aaagtatcgg tatcgtgaaa ccggaaaaac ttctcctgtc gcaagacgat caaagggccc      2760
     agtccctgct ggaatctctc acgaagtatc aggacggacg gtacgagtcc gggcttctct      2820
     ggaagtacga aaacgttcgt ctaccagaaa gcaaaacaat ggcacttaaa agatgggaat      2880
     gtctagatcg gaggatgaat aacgaccaac agctagcggc cgtcgtaaga gcgaagatcg      2940
     aagagcatgt tgagaaaggg tacgttagaa aactgacgga cgaggaagtt caagcggaat      3000
     atcctcgtgt ttggcatcta ccaatgtttc cggtagttaa tccgaacaaa cctggtaaaa      3060
     ccaggctcgt gtgggacgca gcggcaactg cccatggagt ttccctcaat tctgtattgt      3120
     tgaagggccc ggacttgctt acttcactgc tctccgtgct tatccagttc cgagagtata      3180
     aagtcgcagt ctgcggagac atacgtgaaa tgtatcacca gattcaaatg cgaaataccg      3240
     accagcactg ccagcgtttc ttctggaagg aaaacatgac tgatgccgag ccaagcacgt      3300
     atattgtaca ggtgatgacg tttggtgcct gttgctcacc gagtacggcg cagtatgtca      3360
     agaatctaca cgctagcaaa ttcttacaag agcatccagc agccgtagaa gcaatactca      3420
     aacgacacta cgtcgatgat atgctcgtga gtgttgaaca tgaagaagaa gcaattcaat      3480
     taacacaaga cgtcaggaag atacatgcgt cggcaggctt tgaaattcgc aattgggcat      3540
     gcaattcttc agtagtactg aaccggctaa atgaaacttc caaagcggag agaaacttca      3600
     gcggcgacag ctcggttgaa aagatccttg ggatgtggtg gaaccctttt ttagaccact      3660
     tcactttcaa gatctccaag cgcatagacg agattcttct atccggaagt cgccgaccta      3720
     ctaagcggga agttctacgt actcttatga tggtttttga cccgttaggc ctcatcggcc      3780
     attttctgat ggtcttgaag acacttctcc aagaaatctg gcgttcttcg atcggatggg      3840
     atgaaacgat caacgatcaa cacttcgaaa agtggtcaac atggtgtgca gttcttccta      3900
     aaatcaccgg attgcagatt cctcgatgct atcgttcact aacttccgta tatgagagca      3960
     atgaaaccca attgcacatt tttgttgacg cgagcgaagc gggctttgca gcagtagcgt      4020
     accttagatt ccaagaaggg ccaaacatcg agtgtgcact attgggatct aagaccagag      4080
     tttcaccact aaaattcctg tccatcccac gatctgaact tcaggccgcc gtaatcggag      4140
     ttcgcctagc agatacaatc tgcagatcac tgtcgatcaa ggttaagcaa cggtttttct      4200
     ggacggactc caaggatgtt ctgtgttggc tcaactccga tcatcggcgc tatagccaat      4260
     tcgtcgcttt tcgagtgagc gaagtgttag aaacatccga ccaaaaagag tggcactgga      4320
     ttccaagcaa acaaaacgtg gcagatgaag gaacaaagtg gagtcaaaac atcgatcttt      4380
     cggcaacagc acgatggttt agcgggccaa aatttctgtg gaagtcagct gaacattggc      4440
     ctatctctaa atatcccatt ggtagcacta gcgaggaact tcgtccgcac cttctgctgc      4500
     acacgcaggt cacgcaatgc gtaattgact atcatcgatt ctccgattgg cagaaacttc      4560
     tccattgtac cgcctatgta ctccgcttca tacgtaacct gaagctatgc actgaaaaaa      4620
     atgatcgcat aacgggtcca cttcgtcgtc aagaactgag agatgccgaa aattacttgc      4680
     acatcgaagc acagaaagac tccttcactg atgaaattgc cattctctcc agagatcggg      4740
     cctcggaaaa cccagacaag catttaccgc gaaatagtcc gcttttccgg cagggcgttt      4800
     ttctggacga aacaaatatc attagggttc gagacttcca caaacgattc aaccaccaaa      4860
     atcatcagac aacgatcaac gaagtgcgtc aacgctaccg agttccaaaa ctgaaggtag      4920
     catatagaga agtccgtaaa gaatgccaga aatgtaaaaa cgatcaagcc tctccacatc      4980
     ctccaattat gagtgacctg cctccacaac gcctggctgc atacacacgt cctttcacct      5040
     acgtgggaat agactatttt ggtcctatga tcgtcactgt aggacgacgc tccgaaaagc      5100
     gttggggtgt cttggcaacg tgcctaactg tacgcgccat ccacatagaa ctagcccaca      5160
     cactgacaac cgattcctgt atcctggcga tacgcaatat catggcccga agaggaactc      5220
     ccgcggtcat cttcagcgat cgtggtacaa attttcaggg cgccagtaag gaattagcag      5280
     aagctatgca aaatctcaac caaaaccaaa tcatgaagga gttcacaaca gctaataccg      5340
     aatggacctt cataccgcca gcctccccgc acatgggcgg agcgtgggaa cgtctgattc      5400
     gaagcgtgaa aaccaacttg tccaagttgc agtggggtag gctccccacc gacgaagttt      5460
     tgaacagcac attgttagaa atcgagaatg tagtcaattc aaggccactg actgatattc      5520
     ccattgacaa tgacgaatct ccagtgttga cacccaacca ttttttgctc ggttcatcaa      5580
     acggcctaaa accttgggta ccgttcaacg atagcccgtt tacactccga aacagctaca      5640
     aacagtcaca ggttatggcc aatgaattct ggaaatggtg gttgagggat tacctgcccg      5700
     ttataacccg acgcacaaaa tggcttacca aggaggatcc gatcaaagtc aacgacgtcg      5760
     ttatcatcgt agatcctaag gctccccgca acagctggcc attaggccgt atcatcgcca      5820
     caaaattagg actggatggc caagtgagaa gtgccacagt acaaaccagg catggtatct      5880
     acgagcgtcc ctcagtaaag ctcgccgtgc tcgacgttgg cgttagggac catgacgctt      5940
     caggaagacc ttatgcgcat tcggggggga c                                     5971
//
ID   BEL-710_AA-LTR repbase;    DNA;    INV; 705 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-710_AA-I;
KW   BEL-710_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-705
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-705
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 371-371 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 705 BP; 244 A; 144 C; 112 G; 205 T; 0 other;
     tgtaagtgcg cccgtcgatc agcgagccca ttgtgtttcg tcttcctagg tgctacccag        60
     cagaactacc acatcatgac acgatccgtc accgatcaac gatcttgcgc tgtcatcggg       120
     aaaaatcgac aaaaaaaacg tgtatctaat ctaaaaacaa cgttactcta ctgaattaca       180
     aaccctaaaa tagctcaaaa ctagcgttaa aacctatact aaactaatta catatataca       240
     ttgaatttac atagactagt agtcatataa gctatttgct ctaaaagtga attaagaagc       300
     ctgaggtgag attttgttta aattagaagg ttggatttcg ttataaccac agctcttcat       360
     atagcttacg actgcggcca gaaaagttca agcaatcaaa ttaacctttt ctgacaacac       420
     cctcaaatac ggtaagcact ttaatatcaa ttatgttgaa ttcactcaat taaattagct       480
     attccaaaca tattccaaat ttagcttacg aatagcctag ggatgctcaa aaagtgctgc       540
     tgttgcgaag tagtgaatca ctaaatgtaa gtaatctaca caaaatcata aaaaaggctt       600
     agttctaatt gtaaaactcg tttaggaatt tgtaactttc tgcatcaaaa taaaagttca       660
     tgaattcggt tgattctggc ggctgtcgct actactttcc caaca                       705
//
ID   BEL-711_AA-I repbase;    DNA;    INV; 5907 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-711_;
KW   BEL-711_AA-I; BEL-711_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5907
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5907
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 420-420 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(10..2283,2234..5905)
FT                 /product="BEL-711_AA-I_1p"
FT                 /translation="MDKQLSGDGSNLTDDKTAYNCAICTRPDHEEDHMVFC
FT                 EGCKVWLHFSCAGVGSEVEYDENWRCSSCREKDPNNSSDEESEAEDAISVD
FT                 DTIDETGKSGTEKFKTISEDEEVSAALKRMKVEKERLKRRMEQKLALARAQ
FT                 IDLENEKLEMEWALEKQILEMKIASKSVFQKKKEMEKKKLQDQLKQLCDSE
FT                 VRVESEIQKLQNQKKEAKRLATNSKVTRVAKFEELPIGPLSSTPIADPEEG
FT                 TSTAGTKKKTDRLQSTISIVKKKGHEAKKEETESKEECESEEGSFLDNSLV
FT                 EDLGESSSCNTSEEEEIDEKKRKRRDAAVPTRAQMSARQFLSRKLPVFTGR
FT                 PDEWPIFISSFNTTTKACGFSNLENLARLQESLRGPAREAVCTRMLLPGSV
FT                 PQIIDTLRMLYGRPEQLLNTLLVKVRKAEPPRSDRLGSFISFGMVVQQLCD
FT                 HLEATELNDHLVNPLLIQELVGKLPPSTKMDWVRFKRQHSKITLRTLSDFL
FT                 SDLVSTASEVTGITDAPSDPGNRLGKSKGGKQKEYESHINTHLEGSSKPEH
FT                 TRTPCPVCRRTDHRLRNCEEFRKMSVHQRRQVVDRFELCPSCLNGHGKSRC
FT                 KANIRCKYERCQGQHNTLLHSPMPEMRSDCNTHSAAVQLPIIFRMIPVTLS
FT                 FGEKSITTMAFLDEGSSYSLIESSIANRLKANGKPQPLRVTWTAGLSRLER
FT                 DSIILNLSISAVGSKESFPMNSVHTVKELKLPKQSLNYQELAERYSHLRKL
FT                 PLLEYPKRNVIAICENFRYSNTQNDSPKVLIGLKHLHLFAPIESRVGQDGE
FT                 PIAIRSKLGWTVYGPQEGGNLRTAYVGHHTCQGVSNQELHDLLKSHYMLEE
FT                 AGVSVEVIPESPEDRRARKILEETTKRVGDRFITGLLWKEENPSLPDSYPM
FT                 ATRRMKTLEKRLLQMPLLKQNVENQLIEYQLKGYCHEATVEELRDIDQKIW
FT                 YLPLNVVVNPKKPGKVRLIWDAAAAVGGISLNSKLLKGPDFLTTLPSVVCK
FT                 FRQYRIGFGGDIREMFHQLQIRPEDKQALRFMYGGRIYVMDCAIFGATCSP
FT                 SQALYVKDRNAKEFVDRYPAAVDAIVNRHYVDDYFDSTETVEEAVQKACEV
FT                 RFIHSKGGFEIRNWVSNSADVLQQLGESKSNQIIHINADKSTGNERVLGIV
FT                 WDPKADVFTFTMKMQENIHPYLSGDQRPSKRIVLSIVMSLFDPLGLLTLFT
FT                 IHGKVLIQDLWRTGCDWDEEINDESFEKWQRWTALLPEVEQVKIPRHYFEG
FT                 GVSLDYDSLELHVFVDASEVAYGCVAYFRMTVDGSPRCSLVQARSKVAPLR
FT                 QYSIPRLELMAAVLGAKLAETIRANXSLSVKRVHFWTDSSTVYSWIVSDHR
FT                 RYKVFVAYRIGEILSKTAPSEWRWVRTKLNIADDLTKWKDGSKIRSGSQWF
FT                 IGPKFLYEKEDKWPHPEPPRPNVAVELRASCLFHNIDSAEALIDCTRIAKW
FT                 NIIVRTIACVLRFISNIRRKQRGLPIELLPIDPAIHKNRQSSTTIERSFSR
FT                 DEYQAAERHLWRMAQEESFSDEVKILRRCKEGKLENIERSSILFKLSPVLD
FT                 EDNVMRMDGRIQESEFVPFELQFPXILPRRHPVTTKLIEYYHQMFGHANKE
FT                 TVVNELRQRFYIPTIRREVEHVARQCMWCKVHKSKPVTPRMAPLPVQRTTP
FT                 FVRPFSYTGVDFFGPINVIVGRHTEKRWCALFTCFGTRAIHLEVVHSLSTP
FT                 ACLMAIRRFICRRGIPMEFFSDNGTNFVGASKEIAKKIEIDCSEALTCSRT
FT                 RWNFNPPSAPHFGGVWERLVRSVKKAMEVLDDGRKLTDEVLLTTLAEAEDL
FT                 VNSRPLTYVPQEPGNCGSLTPNSFLKGLPTNQTENGILPSCEAAALRDSYK
FT                 RSQVLADRLWKRWLAEYLPHINRRTKWHSEQAPLEVGEVVFIADDNNRKSW
FT                 VRAIVEEVKRGIDGRIRQAVVRTTKGVYRRPVAKLAVPEVRWCKSGFGKDP
FT                 APMLRGG"
XX
SQ   Sequence 5907 BP; 1728 A; 1212 C; 1612 G; 1349 T; 6 other;
     tcctcagaaa tggataaaca gttatcaggg gacggatcta acctcactga tgataagacg        60
     gcgtataact gcgcgatttg tacccgtccg gatcatgaag aggatcatat ggtgttctgc       120
     gaaggctgca aagtatggct ccatttcagc tgcgctggtg taggatcgga agtcgaatac       180
     gacgaaaact ggcgatgttc ttcgtgcaga gaaaaggatc cgaataactc aagtgatgag       240
     gaaagtgaag cggaagatgc gatttcggtg gatgatacga ttgatgaaac tggtaaaagc       300
     ggtaccgaaa aattcaagac aatctcggaa gacgaagaag tttctgcggc attgaaaagg       360
     atgaaggtgg agaaagagcg tctgaagaga agaatggaac aaaagctagc gctggccagg       420
     gctcaaatag atctagaaaa tgagaagttg gaaatggagt gggccctgga gaagcaaatt       480
     ttggagatga aaattgcgtc gaaatcggtt ttccagaaga aaaaggaaat ggagaagaag       540
     aagctgcagg atcagttgaa acagctgtgt gatagcgaag tgcgggtaga atcggagatc       600
     cagaagttgc aaaatcagaa gaaggaagcg aaacgactag caactaatag caaagtaacg       660
     agagtagcga agtttgaaga attaccgata ggcccgttga gttccactcc gatagcggat       720
     ccggaagaag gtacgtccac agctggaaca aagaagaaga ccgatcggct acagtcgacc       780
     atatccattg tgaagaagaa aggccatgaa gcaaagaaag aagaaacaga atcgaaagaa       840
     gaatgtgaaa gcgaagaagg aagtttccta gataattcac ttgtagagga tctgggcgaa       900
     tcatccagct gtaatacgag cgaagaagaa gagatcgatg agaagaaacg taagcggaga       960
     gatgcagcgg ttccgacgag agcccaaatg tctgcgagac agtttttatc gagaaagctg      1020
     ccagtattca ccggccggcc agacgaatgg ccgattttta tcagcagttt caatacgacg      1080
     acgaaggcct gcgggttctc aaatctagag aatcttgcac gattgcagga gagtttgaga      1140
     ggacctgcca gggaggcggt gtgcacccgg atgttgctgc cggggtcagt tccacaaata      1200
     attgacacat tgcggatgct atatggacgg ccagagcaat tgctgaacac actgttggtg      1260
     aaggtgcgaa aggctgaacc cccgagatca gaccgattag gctcgttcat tagtttcggg      1320
     atggtagttc agcagctatg tgaccatctc gaggcaacgg agctgaacga tcatttagtt      1380
     aacccattgc tgatacagga gttggttggg aagctaccac catcgacgaa aatggactgg      1440
     gttagattca agagacaaca ctccaagatt accctgcgta cgctatcaga ttttctgtcc      1500
     gatctagttt caacggctag tgaagtaact ggaataaccg atgcaccctc tgatcctggt      1560
     aatcgtctcg gcaagtctaa aggaggaaaa cagaaagagt acgaaagtca catcaacaca      1620
     catctcgaag gttcgtcgaa accagaacat actagaacgc catgtccggt atgtcgtcgc      1680
     actgatcatc gattgaggaa ttgcgaagaa tttcggaaga tgagtgtcca tcaacgtcga      1740
     caggtagtcg accgatttga gctatgccca tcgtgtttga atggtcacgg gaaaagtcgg      1800
     tgcaaggcaa acatccggtg taagtacgaa aggtgccaag gtcagcataa cactttgtta      1860
     catagtccaa tgccagaaat gcgatcggac tgcaatactc acagcgcggc tgtccagtta      1920
     ccgataattt tccgaatgat tccggtaacc ttgagcttcg gggaaaagtc gataactaca      1980
     atggctttcc tcgatgaagg tagctcgtat tcgctgattg aaagctccat cgcaaatcga      2040
     ttgaaggcga acggaaagcc acagccacta cgagtgacat ggacagcagg tttgagcaga      2100
     ttggaacgag attcaattat acttaatctg tctatttctg ctgttgggtc aaaagaatcg      2160
     tttccgatga acagtgttca caccgtgaag gaactwaagt tacctaagca gtcgttgaac      2220
     tatcaggaac tagcggaacg ttatagccat ctgcgaaaac ttccgttact cgaataccca      2280
     aaatgattcg ccaaaggttt tgataggttt gaaacactta catctatttg ctcccatcga      2340
     gtcacgagtc ggacaggacg gcgaaccaat agcaatcagg tctaaacttg gatggacagt      2400
     gtatggccca caagaaggag gcaatttgcg tacagcttat gtcggtcatc acacttgcca      2460
     gggtgtatcg aatcaggagc tgcatgatct tctgaagtcg cactacatgt tggaagaggc      2520
     gggagtttcg gtagaggtga taccggaatc gccagaagat cgacgcgcac gtaaaatact      2580
     ggaggaaacm acgaagcgtg taggagacag gttcatcacg ggtctgttgt ggaaagagga      2640
     gaatccttca ttgccggata gttacccgat ggcgacgcgc cgcatgaaga cacttgaaaa      2700
     acgtttattg caaatgccac tgttaaagca aaacgttgaa aatcagttga tcgagtatca      2760
     gttgaaaggg tactgccacg aagcgacggt tgaagaactg agggatatcg atcagaagat      2820
     atggtacttg cccctgaacg tcgttgtcaa tccgaaaaaa ccgggtaagg tgagattgat      2880
     atgggacgct gccgccgctg ttggaggtat ttcactgaac tcgaagctct tgaagggtcc      2940
     cgacttttta accacgctgc cgtcggtggt gtgcaagttc cggcaatatc gtatcgggtt      3000
     cggaggtgat atacgggaaa tgtttcacca gctgcagatc cgcccggaag ataagcaagc      3060
     cttgcggttc atgtacggtg gaagaatcta cgtgatggat tgtgccatat tcggagcaac      3120
     gtgttcacca agtcaggcat tgtacgtgaa ggatcgaaac gccaaggagt ttgtggatcg      3180
     ttacccagct gctgtcgatg cgatcgtcaa ccgccactac gtggacgatt attttgacag      3240
     cacagagacc gtcgaggagg cggtgcagaa ggcctgtgag gtgcggttca tccactcaaa      3300
     gggaggcttc gaaattcgga attgggtgtc aaactctgcc gacgtacttc agcagttagg      3360
     tgagtcaaaa tcgaatcaaa ttatccatat caatgctgac aaatctactg gaaacgagcg      3420
     ggtgttgggt atcgtttggg accccaaagc ggacgtattc acgttcacga tgaaaatgca      3480
     ggagaatatt catccgtatt tgtctggtga tcagcgaccg agtaagagaa tcgtcctaag      3540
     catcgtcatg agtttgttcg atccactcgg gctactgaca ctgttcacaa tccatgggaa      3600
     ggtgttaatt caggacctat ggcgcacagg ttgtgattgg gatgaggaga taaacgacga      3660
     gagcttcgag aagtggcaga gatggacagc gctattacct gaggtagagc aggtgaaaat      3720
     tcctcgtcat tattttgagg gtggcgtgtc gctggactat gattcgttgg agctacatgt      3780
     tttcgtggac gctagtgaag tagcgtatgg ctgtgtagca tatttccgta tgacggtgga      3840
     cggatctccc cggtgttccc tggtgcaggc tagatccaaa gtggcaccgc tgagacagta      3900
     ttcgattccg aggctggagt taatggctgc agtattagga gcgaaacttg ccgagactat      3960
     cagagcgaac cwtagcctat cagtgaaacg cgtgcacttt tggacagatt cgagtactgt      4020
     gtattcctgg atcgtatcgg atcaccgccg atacaaagtg ttcgtcgcat acaggatcgg      4080
     agaaatcttg agtaagacgg ctccttccga gtggcggtgg gtgcgtacga aattaaatat      4140
     cgcagatgac ttgacgaagt ggaaggatgg atcaaaaatc agatccggta gccaatggtt      4200
     tatcggaccg aagttcttgt atgaaaaaga agacaagtgg ccacatccag agcctcctcg      4260
     gccgaacgtt gctgtagaac ttcgagctag ttgcctattc cacaatatcg atagcgctga      4320
     ggcgttgatt gattgcacac gtattgctaa gtggaatatt attgtgcgaa cgatcgcatg      4380
     cgttctccgg ttcatctcca acattcgtcg gaagcagcga ggattaccga tcgaattact      4440
     accaatcgat cctgctattc acaaaaatcg acaatcttca actacaatag aacgatcgtt      4500
     ttccagagac gagtaccaag ctgcggagcg ccatctgtgg agaatggcac aagaagaatc      4560
     attttcggac gaagtgaaga ttctacgcag atgcaaagaa gggaaacttg aaaatataga      4620
     gagatccagc atattgttca agctttcacc tgtgctagat gaagacaacg tgatgcggat      4680
     ggacggaaga atacaagaaa gtgaattcgt tccattcgag ctacaatttc ccgwtatttt      4740
     accaagaaga catccggtga ckactaaact aattgaatac taccaccaga tgtttggtca      4800
     tgccaataaa gagacggtag ttaatgagct gagacaacgc ttttacatcc ctactatccg      4860
     tagagaggtc gaacacgtgg ctcgacaatg tatgtggtgc aaggtgcaca aatctaaacc      4920
     agtgacacct cggatggckc cacttccggt gcaaagaact acaccgttcg tacgtccgtt      4980
     tagctacact ggagtggatt ttttcggtcc aatcaacgtc atcgttgggc ggcatacaga      5040
     aaaacgctgg tgtgcactgt ttacgtgctt tgggacaaga gccatccatt tagaagtagt      5100
     ccatagtcta tccacgccag cttgtctcat ggctattcgt cggttcatct gccgtcgagg      5160
     aattccaatg gaattctttt ccgacaatgg aacaaacttc gttggtgcaa gcaaggaaat      5220
     cgccaagaag atagaaatag actgctcgga ggcgttgacc tgttcacgga cgagatggaa      5280
     cttcaatcca ccctctgcgc cccattttgg cggcgtgtgg gaacgactgg tccgatcagt      5340
     gaagaaggcg atggaagttt tagatgacgg gcgtaaactg actgatgaag tgctgttgac      5400
     gactctagca gaggccgagg atttggtgaa ttctcgacca ctaacttatg ttcctcaaga      5460
     accaggaaac tgtggatccc taacaccaaa tagttttttg aagggacttc cgacgaatca      5520
     gacggagaat ggtatactac caagttgcga ggctgctgct ctacgggata gttataagag      5580
     atcacaggtg ttggcagatc gtttgtggaa gagatggcta gcagaatatc ttccacacat      5640
     caaccggcga acaaagtggc acagtgaaca agcaccgttg gaagtcggcg aggtggtgtt      5700
     catagctgat gacaataacc gaaagagctg ggttcgagca atcgtagaag aggtcaagcg      5760
     agggatagat ggcaggatta gacaagcggt tgtccgaaca acaaaaggag tctatcgacg      5820
     gccggttgct aagctagcgg tgcctgaagt acgatggtgt aaatcgggct tcgggaaaga      5880
     tcctgcgccg atgttacggg gaggggc                                          5907
//
ID   BEL-711_AA-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-711_AA-I;
KW   BEL-711_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-521
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-521
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 359-359 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 521 BP; 198 A; 69 C; 111 G; 143 T; 0 other;
     tgtagaggca ccgagtctac agaacagtcc taatgcgtgc aactacatac aagaggagaa        60
     tgtgattgta ccttaaggct atttaccggc cgatgatgaa ctgtcttata tagcgatgtg       120
     ttggagacta gttaagatag tggaggtaaa taaaacgtat tgaagatcta ttgaattgat       180
     taaagaacta tttgttagct aaaccagtaa ataataatta taaatagaaa aagcgaagaa       240
     gtttataaaa agattgattc agattaaagc ggaggcaagg taaactatga ttaatctttg       300
     aaatgaagtg cttattataa aatgttgtag gctgacggag attgcagtgt gaagaggcag       360
     aaagataaac actatacaat tgttgtcatt gcgaggaaaa ctatccatgt gagtcaaaga       420
     tatactataa ctaagcaata tttaaatgaa taatataatt gcagttttga gccgctgtga       480
     accacacact gcttcaagga ccagtttaaa agatccgaac a                           521
//
ID   BEL-712_AA-I repbase;    DNA;    INV; 6310 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-712_;
KW   BEL-712_AA-I; BEL-712_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6310
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6310
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..6308
FT                 /product="BEL-712_AA-I_1p"
FT                 /note="includes a stop codon."
FT                 /translation="MNSARTCGKCRADGWVSHMVGCDMCDIWLHRDCAGFS
FT                 SETLDPNKSWRCERCLHYEATEVASHRTQHTTRTSSSIRAQRAELALKLLE
FT                 EEQELIRRNREKEDEFRRKEQEIQKTRAEEDARLLKQKHELLQSLEDENGS
FT                 VRSVMSSKASRKKVESWLGTASCPVPARIVEEPQVSGSVDQPGIPKLTAEA
FT                 VSMSNLKAGFDALLDANAMKDDNRPKSTSTPHKHLSTSSVIPNATIPFSNL
FT                 PYQVTNSSSVSKWAGYYPGANIHTSSALPTIFESQSNATNATQTNVTFGSL
FT                 GVASSAPLASKIHDSQLPPTYTARSNKMSTVGCESMSLGQIVSVNSGSQSV
FT                 STPPSGRVSNVVTTQSRSNSGVPCSGQWNQPWTIPAVTATTVSVPSSGVRG
FT                 QPGAGGRMATSSSALSPATGNNDTQRVDGSLDTSLQAAPSSVQIAARQVMP
FT                 RDLPSFSGDPQDWPLFSSSFYNSTVACGFSDAENLARLQRCLKGHALESVK
FT                 SRLLMPQSVPHVMETLRMLYGRPEILIHSLLQKLRSVPSPKNDNLQSIITY
FT                 GLAVRNLVDHMHIANLEDHLRNPMLVHELVEKLPPQMRMQWSWYKRSICDV
FT                 NLATFGDFMSELVKTATDVTIPSDASTQQTKFLTVGREKQKLYVHAEADNA
FT                 QLTEATDNLRNPSREAEIMKRQCAYCSDESHEIARCHQFKALDLDGRWKAI
FT                 RSKGLCRTCLIPHRKWPCRSGKECGVDGCRFRHHALLHSRIATESVPSTAS
FT                 SENVVRQNFHSVTKFSLFRYIPVTLEGNGKKVNTFAFLDDGSESTLMESGL
FT                 AAELNISGSEEPLWLGWTGDISREEKGSQRISVVISGTGLKGKFRLNNVRT
FT                 VQTLKLQSQSFQYNELQKIYPHLRGLPLRSYSDAIPRMIIGIEHVQMLTTL
FT                 KVREGGSNDPVAAKTRLGWCVYGKQVSGNSTVTRLHVHSNEIGNRELHEQM
FT                 KQYFSVEEAAVATPLESEEDRRARGILEQTTRRIDGGFETGLLWKYDRPTF
FT                 PNSYSLAVRRMQSLEKKLTKEPALQERVNELIAEYETKGYAHRITQVEVES
FT                 TNSDRVWYLPLGIVRNPKKPGKIRLIWDAAARVNGISFNDMLLKGPDMLTS
FT                 LFAILLRFRQRPVAVCGDIREMFHQVRIIPQDKQSQRFIYREHRDQTPQVF
FT                 VMDVATFGATCSPCSAQHVKNTNAKDFAPHFPRAAEAIINAHYVDDYLDSV
FT                 DTIEEAVQLVEEVKYVHAQGGFEIRNFASNSLEVLQRLGQTECLNEKSMIL
FT                 DKITDTERVLGMMWKPAEDVFTFESTWKADLTVLLEEDKAPTKRQVLRLVM
FT                 SLFDPCGLIAHFVIHGKILMQHIWRSGVDWDESIGDDLRDLWDDWTRLLSQ
FT                 LHEVNVPRCFFGYSSSKLHNGIQLHVFVDASELAYACVVYLRILQDGVVRC
FT                 VLVAAKTKVAPLKPLSIPRLELQAGLIGCRLMESICAALNLPLEKRCLWTD
FT                 SKTCLSWIRSDSRRYHPYIGFRVGEILNVSVVDEWHYVPSKHNVADDATKW
FT                 GVGPCFNSGCRWYTGPSFLYLSEKEWPEQPGKEITTEEELRVMFHHHDEVV
FT                 HPLIDVNRFSNWNRLLRATAFVLKAVKLFCKKCQLGPLTSEDLLQAENLLW
FT                 RQVQYEAFPDEYRNLEFNKTNPGMDQKQIDKQSPLYEQSPCMVDTGVIRMN
FT                 SRIIAAPTLSFETRYPIILPKDHKVTALLVDSYHRRFKHQYRETVFNEIRQ
FT                 RFRIPKLRSLIQRVAKNCQYCKVRKATPRTPMMASLPKVRLTPHIRPFCYT
FT                 GVDYFGPLQVKQGRSLAKRWVALFTCLTTRAVHLEIVHSLSTQSCVMAIRR
FT                 FGARRGFPTDFYSDNGTCFRGACNLLKEQIDAIHEDCAVTFTNARTS*HFN
FT                 PPSAPHMGGSWERMVRSVKAAMGVIAEYPRYPSDEILETVVLEAEAIVNSR
FT                 PLTYVPLDDPEQEVLTPNHFLLYGTSGVVQPRSSLLDEGVVLRDSWKMAQY
FT                 LADEFWRRWVREYLPTLTRRTKWFEPTKPLKPGDLVIVIEENKRNGWLRGR
FT                 IVDVMRGKDGQVRSAVVCTADGIVKRPAVKLALLDVRGDDHVQGLPEIHGR
FT                 E"
XX
SQ   Sequence 6310 BP; 1789 A; 1390 C; 1606 G; 1525 T; 0 other;
     aacttaaaag attcactgat tgaatctgtc actgcgcagt aagcagtagg aagttctgcg        60
     aagtaagcag caacatgaat tccgctcgga cttgcggaaa atgtcgagca gatggctggg       120
     taagccatat ggttggatgc gatatgtgcg acatttggct ccaccgggat tgtgcaggct       180
     tttcgagcga gacccttgat cccaacaaaa gctggcgctg tgagcgatgc cttcattacg       240
     aggcgacgga agtggcaagc caccgcactc agcatactac aagaacgtca agcagcattc       300
     gagctcaacg ggctgagtta gctttaaagc ttctcgagga ggaacaagag ttgatcagga       360
     ggaatcgtga gaaggaggat gagtttcgtc gaaaagaaca agaaattcag aagacgagag       420
     cagaagaaga tgctcggctg ctcaaacaga aacatgaact gctgcagtct ttggaggacg       480
     aaaacggaag cgttcgaagc gtcatgagta gtaaggcaag tcggaagaag gtagagtcgt       540
     ggcttgggac tgcttcttgt cctgtaccag ccaggatagt tgaggagccg caagtatctg       600
     gtagtgtaga tcaacctggg atcccaaagc taacagcaga agcagtttcg atgtcaaact       660
     tgaaagctgg tttcgacgct ttgttggacg cgaatgcaat gaaggacgac aacagaccca       720
     aatcgacgtc aacaccacac aaacatttaa gtacatcttc agtaattcct aatgcaacaa       780
     tccctttttc gaacttgcca tatcaagtga ccaacagttc atcagtttcg aagtgggctg       840
     ggtactatcc tggggcaaat attcacacat cgtccgcgct tccgacgatt tttgaatccc       900
     aatcgaatgc gactaatgcc acacaaacaa atgtaacttt tggaagtctt ggagttgcgt       960
     catcggctcc tcttgcttcc aaaattcacg atagtcaatt gcctccaacg tatactgcta      1020
     ggtctaacaa aatgtctacc gttggttgtg aaagtatgtc cttgggacaa atagtatctg      1080
     tcaattccgg ttcacaatcc gtatcgacac caccgagcgg acgtgtgtca aatgtagtta      1140
     caacgcagtc gcgatctaat tcgggtgtgc cttgttctgg acagtggaat caaccttgga      1200
     ctataccagc tgtaactgcc acaactgtat cagtgccgtc atcaggtgta cgtggacaac      1260
     ctggagcagg cgggcgaatg gctacttcga gttcagcgtt gtcaccagcg acgggaaata      1320
     acgacactca gcgagtcgat ggttcacttg atacgtcgct tcaggcagct ccttcaagcg      1380
     ttcagatagc agcacgacag gtcatgccaa gagatctacc gtcattctca ggtgatcctc      1440
     aggactggcc gttattctcc agttcatttt ataactctac ggtcgcctgc ggattctcgg      1500
     acgcggaaaa tctggcccgt ttgcaacgat gcttgaaggg acatgcgcta gaatctgtaa      1560
     aaagtcgtct gttaatgccc cagtcagtac cgcacgtgat ggagactttg cggatgttat      1620
     atggacgacc tgaaatcttg atacactccc tactgcagaa gttgcgaagc gttccttcgc      1680
     caaaaaacga taacttgcaa tcaattatca cttacggctt agcagtgcgt aaccttgtcg      1740
     atcacatgca cattgcaaat ctagaagatc atttgcgtaa tcctatgttg gtgcatgagc      1800
     tagtggagaa acttccaccc caaatgcgaa tgcaatggtc ctggtacaag cgctcaattt      1860
     gtgatgtcaa cctggcgacc tttggcgatt ttatgtcgga gttggtgaaa acagcaacag      1920
     acgtgacgat tccatcggat gcgtcgacac agcagacaaa attcttgacc gtgggacgtg      1980
     aaaaacaaaa gctgtatgtt catgcggagg ccgataatgc tcaattaaca gaagcgacag      2040
     acaacttacg taatccttct agagaagcag aaatcatgaa gagacaatgt gcttactgtt      2100
     ctgacgaatc tcacgaaatt gctcgatgcc atcagttcaa ggctttagat cttgatggca      2160
     gatggaaggc gattagatca aaaggacttt gccgaacttg tttaatccca catcggaagt      2220
     ggccgtgccg ctctggaaag gagtgcggag tggatggttg ccgattccgc caccatgcgt      2280
     tgctgcattc acggatagct acggagtcag tccctagtac agcttcaagt gaaaacgtcg      2340
     tgcgacagaa tttccactct gttacgaaat tctctctgtt tcgctatata ccagtaacat      2400
     tggaaggaaa tggaaagaaa gttaatactt ttgcgttttt ggacgatggg agtgaatcca      2460
     cattaatgga atccgggcta gcagcggagt tgaatataag cggttctgag gagccccttt      2520
     ggctaggttg gactggggat atatctcgag aagagaaggg atctcaacga atctcggttg      2580
     tcatttcagg aaccgggtta aaaggtaaat tccgattgaa caatgtgcgt acagtacaga      2640
     cgttaaagtt acaaagccag tcatttcaat acaacgagct tcagaagatc tacccacacc      2700
     tgcgaggact tccattgcgc agctactcag acgccatacc gaggatgatc attggcattg      2760
     aacacgtgca gatgctcacc actctgaagg ttcgcgaagg cggttcaaat gatcctgttg      2820
     cagccaaaac gcggctgggc tggtgcgtgt acggaaaaca agtcagtgga aacagcacag      2880
     ttacccgact gcatgttcat tctaacgaaa ttggaaaccg agaactacac gagcaaatga      2940
     aacaatactt cagcgttgaa gaggccgcgg tggctacccc actggaatca gaggaggaca      3000
     gacgagctcg tggtatactc gaacaaacaa ctcggcgaat cgacggaggt tttgagaccg      3060
     ggcttttgtg gaaatatgat cgaccgacgt ttccaaatag ctactccctt gctgtacgca      3120
     gaatgcaatc gttagagaaa aagcttacaa aggaaccggc acttcaagaa cgagtaaatg      3180
     aactgatagc tgaatacgaa acgaaaggat acgctcaccg aattacacaa gtggaagttg      3240
     agtcgacaaa ttcggatcgt gtgtggtacc tgccgctagg tatcgtgagg aatcccaaga      3300
     aaccggggaa gattcggctg atttgggatg ctgcggctcg agtaaacggt atctcattca      3360
     atgacatgct cctgaaagga ccagatatgc tgacgtcact cttcgctatt cttctgaggt      3420
     tccgtcagcg accagttgct gtatgtgggg atatccggga aatgttccac caagttcgga      3480
     tcatcccaca agacaaacag tcgcaacgat tcatttaccg agaacatcga gatcagactc      3540
     cacaggtttt cgtcatggat gtggcaacat tcggtgctac gtgctcgccg tgttctgcgc      3600
     agcatgtcaa aaatacgaat gcaaaggatt tcgctccgca ttttccgagg gcagctgaag      3660
     ctattatcaa tgcacattat gttgacgact acttggacag cgttgacacg attgaggagg      3720
     cagtacagct ggtcgaagaa gtgaagtacg tgcacgctca gggaggattt gaaatccgca      3780
     attttgcatc caattcgctt gaagtacttc agcgtttggg tcaaaccgaa tgcttaaatg      3840
     aaaagtccat gattctagac aagattacgg atacagagcg tgtactaggg atgatgtgga      3900
     aaccggctga ggacgtattt actttcgaaa gtacctggaa ggctgatctt actgtgttgt      3960
     tagaggaaga caaggcgccc actaaaagac aggtgttgag gctcgttatg tcgctgtttg      4020
     atccatgtgg gttgattgct cacttcgtaa tccatggcaa gattcttatg caacacatct      4080
     ggagatctgg tgtagactgg gatgaaagta ttggagacga tctacgggat ttgtgggatg      4140
     actggactcg acttttaagc caattgcacg aagtaaatgt tcctcgttgt tttttcggct      4200
     attcaagcag taagttgcac aacggaatac aactacacgt gtttgttgac gccagtgagt      4260
     tggcgtatgc gtgtgtggtg tatcttcgga ttctacaaga tggagtagtg cggtgcgtgc      4320
     tggttgcggc aaagacgaaa gtggcgccgc tcaaaccact ctctatcccc cgactagagt      4380
     tgcaagccgg tttaataggc tgtcgattga tggaaagtat atgtgcagct ctgaatcttc      4440
     ccctagaaaa gcgatgtttg tggacagatt ctaaaacatg cctttcgtgg attcgctcgg      4500
     acagtcggag atatcacccg tacataggct tcagagtcgg cgaaatttta aatgtctctg      4560
     tcgtagatga gtggcactat gttccttcaa aacacaatgt agctgacgat gcaacgaagt      4620
     ggggtgtagg cccatgcttc aactctggtt gccgctggta cactgggccg agttttctct      4680
     acttatcgga aaaagaatgg cccgagcaac cgggcaagga aatcactact gaagaagaat      4740
     tacgagtaat gtttcaccac catgacgaag tagttcatcc attgatcgat gtaaacagat      4800
     tctcgaattg gaaccgattg ctacgagcga cagccttcgt attaaaggcg gtcaagctgt      4860
     tttgcaaaaa atgccagctt ggaccactga caagcgaaga tttactacaa gcggagaact      4920
     tgttgtggcg gcaggtgcaa tatgaagcct ttcccgacga atatcgtaac ctggagttca      4980
     acaaaacgaa cccaggaatg gatcaaaagc aaattgataa gcaaagtcct ttgtacgaac      5040
     agtcaccgtg tatggtcgat actggcgtaa taagaatgaa tagcagaata attgcggcac      5100
     caacattatc atttgaaacc aggtacccca taatattgcc gaaagatcac aaggtaacag      5160
     cccttctcgt cgatagttac caccgtcggt tcaaacatca gtaccgtgag acagttttta      5220
     acgaaattcg tcagcggttt cgaataccga agttacgctc gttgattcaa cgtgtggcga      5280
     agaactgcca gtactgcaag gtccggaaag caacacccag aacacctatg atggcatcac      5340
     taccgaaagt tcgattaaca cctcacatca ggccgttttg ctatactggt gtcgactact      5400
     ttggtcccct acaagtaaaa caaggtcgta gtttggcaaa acgatgggtg gcattattca      5460
     catgtctcac gacacgagcg gtacatttag aaatagtaca cagcctatcc acacagtcct      5520
     gcgtaatggc aattcgcaga tttggcgcac gcagaggatt tccaactgac ttctactcag      5580
     acaacggaac ttgttttaga ggtgcctgca acttgctaaa ggagcagatt gatgctatcc      5640
     atgaagattg cgcagtaact ttcaccaatg cgagaacgag ctgacacttc aaccccccgt      5700
     cagctcctca catgggcggt tcatgggaac gtatggtgcg ttccgtcaaa gctgcaatgg      5760
     gagtcatagc agagtaccct cgttatccaa gcgacgaaat tttagaaaca gttgtgttgg      5820
     aagcggaagc aatcgtcaac tcacgtccgc tgacctacgt gccccttgac gatccagagc      5880
     aagaagtgtt aacacccaat cattttctgc tgtatgggac aagtggtgta gtacagccga      5940
     ggtcgtcgtt actggatgaa ggagtagtgc tacgagacag ttggaaaatg gcgcagtatc      6000
     tagcagacga gttttggaga cgctgggtac gtgaatacct accaacattg actagacgga      6060
     cgaaatggtt tgagccaacg aagcctttga agcccggaga tttggttatt gttatcgaag      6120
     aaaacaaacg aaacggatgg ctacgtgggc gtatcgtcga cgtaatgcga ggcaaggatg      6180
     gacaggttcg aagtgcagtt gtatgcacag cagatgggat agtcaaaaga cctgcagtaa      6240
     agctagctct attggatgtt cgtggtgatg accatgtgca gggccttccg gaaatacacg      6300
     ggagggagga                                                             6310
//
ID   BEL-712_AA-LTR repbase;    DNA;    INV; 752 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-712_AA-I;
KW   BEL-712_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-752
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-752
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 372-372 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 752 BP; 237 A; 151 C; 144 G; 220 T; 0 other;
     tgttgagaac tgccaatctt ccaacactgg tcatagtgga gtgaattccg gacgcccctc        60
     ttcactatcc atcacctcga cagcgaaggc aaacggacgt cagtgagagc aaacaataga       120
     tccagatgaa cgtggtcgat gttattcgct gcattacggc atagattgtt ttcttttggc       180
     aaaagtattt gcaaagttga ttggttctct aactaaagga ccagcattgg tatctaacca       240
     cggtaagccg gaacgaaatt cccgaaattg agcattatac atcatccata gcatccacct       300
     cacagtgtgt actctccagg agttgttcgg gttaccagct agaagctgta gtcgactaga       360
     aatccagacg agagatatcg tcgccgatgt tcatagctga agcgtgatcg ggatacgcat       420
     actctaatct ttgagttatt aattaattcg gtaatttgaa aatcctagtt aaaacctagc       480
     ttaattccat accataaaat tgttcttatt ctaatactaa aaatatacat ttactaggca       540
     atcaagatat tgaactgagc taagatctgt tgtgagtcga ggtttcttaa atcctgcagt       600
     aaaatactga atgtaagtca cgagctttgt actaatgaaa tttatttaca aactaatgaa       660
     tttttcaata aaattacagc ttttaagctg cttctgtaac gaactgctac aagaagtgtt       720
     tgaactgctt gaaacctgaa cgatccgcaa ca                                     752
//
ID   BEL-713_AA-I repbase;    DNA;    INV; 6257 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-713_;
KW   BEL-713_AA-I; BEL-713_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6257
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6257
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 421-421 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..6255
FT                 /product="BEL-713_AA-I_1p"
FT                 /translation="MSGKGSKTGSVRNGSAEMRSNHRKDGTKVTCTSAGTS
FT                 TRGIVPTDNLAAGFHINSPVVAASATSAAAVASSETVGITDLEVGVLRNRA
FT                 AVVSHSTVPGNAGNSPPNTQVNADVANKLYAQGAVPKQAASTADLKNRSSL
FT                 SNLRGKLVVRRNPVRRARAYRGYSCELCADSDNSRMVQCDGCNRWFHFSCV
FT                 EVTEGIAEISWVCPVCPATQRKEHQRSPSEDVQAVVQADHPPPKDCVDTKS
FT                 CGKKSGKSSKSSERRKIDLRLQKLEEQKKLEQKFLEEKFKILEEYDDESET
FT                 CLDDEDLEKMSNISQWIRETERDVAAQDSGVVEEDLQEEHGVPSGLTDQPV
FT                 PVGQRQASQHHHSQGGQRNTFPSFAPEQRSTPQMRPAVLQTNQTSECFPLR
FT                 SAREQFLTQPVSAGSAIEPERIPAEETICILNRSQLAARQAVSKDLPEFAG
FT                 NPEDWPLFFSMYTSSTQMCGFSNEENMLRLRKCLKGKALDAVKCRLLHPSN
FT                 VAGVLSTLKMLYGRPEAIVQAAIRKIRSLPSPEVDRLESLVNFALTVENLV
FT                 ATIEVCGVRDFVYNASLKFELVDRLPPSLKLDWAKYTRGNPAPNLLDFSSW
FT                 LYSLAEDASAVMQTSDTAPRGRGNKKDAFINIHSELENVQDKFLAGPAKDT
FT                 RSKSHGTSKECFVCKDSCSSIAKCKRFGELSYESKWAVVREAKLCRKCLRK
FT                 HNGTCRQQHHCGINGCTYLHHPLLHSEKTAPIRSASETATNSSCNVHQTQT
FT                 NEVLFRIVPVVLHGPARIIRTYAFIDDGSELTLMEHSLAQELGLEGTQMSL
FT                 CLKWTGDTRRIENESQKVEVAISPARNTTQKYPLTDVRTVQELKLRPQTLI
FT                 ASEMQNRYSHLSGIPFDSYINVSPRILIGLDNAQLGYALKSREGKPSEPIA
FT                 VKTRLGWIVYGSCSAKHHLESHVNYHAVQVCDCNEVSDENLHLAMKNYFTL
FT                 DSMGISKPEKVLLSVEDERAMKILEAVTHRKDGRFESGLLWKYDAVRLPDS
FT                 KGMALRRWECLERRMKKDEGLAEILRTKMLDYIQKGYVRKLTEEELKIRQP
FT                 REWYLPVFPVCNPNKPGKLRLVWDAAATVQGISLNSVLLKGPDQLTSLLTV
FT                 LVQFREFRVAVCGDIRDMFHQVLMKEEDQHCLRFFWKGDTQCSAPDVYAMT
FT                 VMTFGACCSPTTAQYVKNTNAKRFEHECPQAVDAIVKKHYVDDMLASVETE
FT                 EEAVKLAQDVKRIHAAGGFEMRNWLSNSSVVRASLKEEATTEKYLGAGEEN
FT                 ITEKVLGLWWNTTSDCFTFKVSARYDQDLLCGRRRPTKREVLRTLMMMFDP
FT                 LGFISHFLMYLKVLMQEIWRTSIEWDTPIEDPQFQKWLIWLKVLPKVINVQ
FT                 IPRCYRTTVSLQGSIQMHTFVDASESGFAAVVYLRFEEGDFVETAFVSAKT
FT                 RVAPLKFLSIPRSELQASVLGVRLANSITQSLSVKVWKRYFWTDSKDVLCW
FT                 LNSDHRRYSQFVAFRVSEILETTDAIEWRWVPTKLNVADEGTKWTHLPDFS
FT                 ASSRWFQGPEFLRKPQVTWPIASRYGTTETELRAHLLTHVTTTESIINPQN
FT                 FSKWSRILHTTAYVFRFICNSKQALRTKQRTGGPLTQQEFTRAENFLYRLA
FT                 QSNEYADEIAILYGKRLNETERQPIPKSSSIAYFCPFLDDSDVLRVRGRTS
FT                 ACPAIDYDAANPIILPRNHHVTRLIMLHYHHKYHHQNHNTVLNEIRQRYRI
FT                 PRLKSAFNIIRKQCQECMNAGATPQPPAMSDLPPSRLAVYSRPFTHMGVDY
FT                 FGPILVTANRKTEKRWVLLATCLTIRAIHLQIAHTLSTDSCIMALRNVIGR
FT                 RGTPAVIYSDQGTNFRGASKELKTAMDDLDKERLKGEFTTRHTTWSFNPPA
FT                 SPHMGGAWERLIRTVKQNLNKLLLNRTMSYEVLENLLIEVENVVNSRPLTS
FT                 IPLEDDESPVLTPNHFLLGSSNGLKSWAPLDDSPAALKNCWQLSQSLANQF
FT                 WIQWLRDYLPSITRRTKWFTPTKPIEVGDIVIVADPNLPRNCWPKGRIIST
FT                 KPGADGQVRWATVQTTSGIYERPALKLAVLDVGVCKDTPQDDHRRIPGG"
XX
SQ   Sequence 6257 BP; 1764 A; 1491 C; 1555 G; 1447 T; 0 other;
     tcttacaaat ttcttttgcg gcattgtgtg atgtctggaa agggctcgaa gactggatct        60
     gtcaggaacg gttccgctga aatgcgttcc aatcatcgga aagatggaac gaaggtgacc       120
     tgcacatcag cgggaacctc aactagaggg atcgtaccaa ccgataatct ggcagcggga       180
     tttcacatta atagtccagt tgtcgcggct agcgcaacca gcgcagcagc ggtcgcgtca       240
     agcgaaacag tgggcataac ggaccttgag gtaggcgtgt tacgcaatag agctgcagta       300
     gtcagtcatt caacggttcc gggaaatgcg ggaaactccc ctcctaatac tcaggtaaat       360
     gctgacgtag ccaataaact ttatgctcaa ggagcagtgc cgaagcaagc ggcttcgact       420
     gccgatctga aaaatagatc atctctttca aatctgcgcg gaaagctcgt tgtaagacga       480
     aatccggttc gccgcgcgcg tgcgtatcgt ggctatagtt gtgagttgtg tgcagatagt       540
     gacaatagca gaatggtgca gtgtgatggt tgcaacagat ggttccactt ttcatgtgtg       600
     gaagttaccg aagggatagc cgaaataagt tgggtctgcc cagtgtgtcc agcaactcag       660
     cgcaaggaac atcaacgatc cccatccgaa gatgttcaag cagtagtaca agctgatcat       720
     ccacccccaa aagattgcgt tgatacaaaa tcatgtggaa agaagagcgg aaaaagcagc       780
     aaaagcagcg aacgtcgtaa gatagatttg cggttgcaaa aacttgaaga acagaaaaag       840
     ttggagcaga aattcttgga ggagaagttc aagatcttgg aagagtacga tgacgaaagt       900
     gagacgtgtt tggatgacga agatctcgag aaaatgtcca acatttcaca gtggatcaga       960
     gagacggaac gtgacgtagc agctcaagat tccggtgtcg ttgaagagga tttgcaggaa      1020
     gagcatggag tgccatctgg acttactgat caaccagtac cggtcggcca acggcaagca      1080
     agccaacatc atcactcgca aggtggacag cgaaacacat ttccaagttt cgctcccgaa      1140
     caacgttcta caccacagat gcgaccggca gttcttcaga cgaatcaaac atcggaatgc      1200
     ttccctctac gatcggcgag agaacagttt ctcactcaac cagtgtcggc cggttcggcg      1260
     atcgaacctg aacgaattcc tgcggaggag actatttgta tcctcaaccg gagccaactg      1320
     gccgctagac aagcggtatc taaggatttg ccggagtttg ccggaaaccc tgaagattgg      1380
     cctctattct tttcaatgta tacctcatca acgcagatgt gtggcttctc caacgaggaa      1440
     aacatgctgc gtctgcgtaa atgtctgaaa gggaaggcac tagatgctgt gaagtgccgt      1500
     ctgcttcatc cttccaatgt ggctggagta ctttcaacgt tgaagatgct ctacggcagg      1560
     ccggaggcga tcgtccaagc agccataaga aaaattcgtt cgcttccctc tccggaagta      1620
     gatcgactag aaagtctggt caatttcgca ctcaccgttg aaaatcttgt ggcaacgata      1680
     gaagtatgcg gggtcagaga cttcgtgtat aatgcttcac tcaaattcga actggtcgac      1740
     cgattaccac catctctgaa gttagactgg gcgaaatata cccgaggaaa tccagcgcct      1800
     aatcttctgg acttcagttc ctggctatat tcattggccg aggatgctag cgcggtaatg      1860
     cagacgtcag atactgctcc acggggtcgt ggcaacaaaa aagatgcttt catcaacatc      1920
     cactccgagc tcgagaatgt tcaagacaaa tttctagcgg gtcctgcaaa agatacgcga      1980
     tctaaatcgc acggaacatc caaggaatgt ttcgtatgca aagattcctg ttcgtctatt      2040
     gcaaaatgta aacggtttgg cgaactgagt tacgaatcaa aatgggccgt cgtacgtgaa      2100
     gcgaagttat gtcgtaagtg ccttcgtaaa cataatggta catgtaggca acaacaccac      2160
     tgtggaataa acgggtgtac atatttacac caccctctgc tacacagcga gaagaccgca      2220
     ccaatcagaa gcgcatctga gacggcaacg aattccagtt gcaacgtgca tcaaactcag      2280
     acaaacgaag ttttatttcg tatagttcct gtggtgctac atggccctgc caggatcatt      2340
     cgaacgtacg ccttcatcga tgatggatct gagcttacgc ttatggaaca ttctttagcg      2400
     caagaactcg gattggaagg aactcagatg tccctttgct tgaaatggac aggggataca      2460
     cgaagaatag agaacgaatc tcaaaaggtt gaagttgcta tttcacccgc aagaaataca      2520
     acgcagaagt atccactcac agacgttcgg actgttcaag agcttaaact caggccgcaa      2580
     accctgatag cctcggaaat gcaaaaccgc tatagtcatc tatctggaat acccttcgat      2640
     tcctacatca atgtaagtcc acgcatccta atcggtctgg acaacgcgca gctaggatat      2700
     gcacttaaaa gtcgagaagg caaaccgtct gaaccgatcg cggtcaaaac ccggctaggg      2760
     tggattgtat acggaagctg ctcagcaaaa catcacctag aaagccacgt caactatcac      2820
     gctgttcagg tatgcgactg caatgaagtt tccgatgaaa atctccattt ggcgatgaag      2880
     aactatttca cgctggatag tatgggtata tccaaacctg aaaaagtgct actttccgta      2940
     gaggacgagc gagccatgaa aatcttagaa gctgtaacac atagaaaaga cggccgcttc      3000
     gagtcgggcc tgctctggaa gtacgacgcg gtgcgacttc ccgatagtaa agggatggcc      3060
     ttaaggagat gggagtgctt ggagcgccga atgaaaaagg acgaaggatt ggcggagata      3120
     cttcgcacga aaatgctaga ttacatccag aaagggtatg tccgaaaatt gaccgaagaa      3180
     gagctaaaga tccggcaacc acgagagtgg tacctgccag tgtttccggt ttgtaatccc      3240
     aacaaaccag ggaagttacg attagtttgg gatgcagcag ctaccgttca aggaatatca      3300
     ttgaattcgg ttttgttgaa gggacccgac cagctgacgt ccctgctcac agttttggtt      3360
     cagttccggg agttccgagt tgcggtatgc ggagacatac gggacatgtt tcaccaagtt      3420
     ttgatgaaag aggaggatca acactgtttg cgcttttttt ggaagggcga tacgcaatgc      3480
     agcgcgccag atgtgtatgc catgacggtg atgacgttcg gtgcctgctg ttcgcctacg      3540
     acagcccaat acgttaaaaa cactaatgcg aaacggttcg agcatgagtg tccacaagcc      3600
     gtcgatgcca tcgttaagaa gcactacgtc gacgatatgc ttgctagcgt cgagacagag      3660
     gaggaagcag taaagctagc tcaggacgta aaacgaatcc acgccgcagg agggtttgaa      3720
     atgcgcaact ggctttccaa ttcttcggtt gtccgtgctt ccttgaagga ggaagcgact      3780
     acagagaaat acctcggagc cggagaagaa aacatcaccg agaaagtatt aggcctttgg      3840
     tggaacacga ctagtgactg tttcactttt aaggtatctg cacggtatga ccaagatcta      3900
     ctttgcggac gtcgtcgacc cactaagcgt gaggtgcttc gtacactaat gatgatgttc      3960
     gacccgctcg gcttcatttc gcactttctc atgtacctaa aggtactaat gcaagaaatt      4020
     tggaggacgt cgattgaatg ggataccccc atagaggacc cacagtttca gaagtggcta      4080
     atttggttga aggttctgcc gaaagtcatc aatgttcaga ttccacggtg ttatagaaca      4140
     acagtgtcgc tacaaggcag tattcagatg cacacgtttg ttgatgcgag tgaaagtgga      4200
     ttcgcagcgg ttgtgtacct taggtttgag gaaggagact ttgttgagac cgcctttgtt      4260
     agcgcaaaga ctagggttgc cccgctaaaa tttctctcga ttcctcgttc agaactgcaa      4320
     gctagcgttc ttggtgttcg gttagcgaac agcatcactc agtctttatc tgtaaaggtg      4380
     tggaagcggt acttctggac tgattcaaaa gatgtgctgt gctggttgaa ttctgatcat      4440
     cgacgataca gtcaatttgt ggcatttcgt gtaagtgaga tcctggagac gacagatgcc      4500
     atcgaatggc gatgggttcc aaccaaacta aacgtggccg acgaaggaac caagtggacg      4560
     cacctaccgg attttagcgc atctagccgt tggtttcaag gaccggagtt tctgcgaaaa      4620
     ccacaagtga cgtggcctat tgcatctcgg tatgggacga cggaaacgga gctacgagca      4680
     catctgttaa cacacgttac tacaacggaa tcaatcataa atccacagaa cttctccaaa      4740
     tggtccagga tactacatac tacagcgtat gtgttccgtt ttatatgcaa ctcaaaacaa      4800
     gccctgagaa cgaaacaacg aactggtgga ccgctcacgc agcaggaatt tacaagagca      4860
     gaaaacttcc tatatcgtct tgcccagagt aacgaatacg ctgatgaaat tgccattctg      4920
     tatggtaaac gcttgaatga aacggaaaga caacctattc ccaaaagcag ctccattgcc      4980
     tatttctgtc cttttctcga tgattccgat gtgctgagag ttcgtggccg aactagcgca      5040
     tgcccggcga tcgactacga cgcagctaat cctatcatcc ttcctcgtaa tcatcacgta      5100
     acccgtttga taatgctcca ttatcatcac aaatatcacc accaaaacca caataccgta      5160
     ctcaacgaga ttcgtcaacg gtacagaatc cctcgcctca agtctgcctt caacataatc      5220
     cgcaagcagt gccaagaatg catgaacgcc ggagcaaccc cacaaccgcc agccatgagc      5280
     gatcttccac catctcgtct agccgtttat tctcgcccgt tcacgcatat gggggtggat      5340
     tacttcggcc caatcttggt tacagccaat cgaaaaaccg agaaacgctg ggttctacta      5400
     gctacctgcc taaccatccg cgccatccac ttgcaaattg cacacactct tagcaccgat      5460
     tcctgcatta tggctctgcg gaatgtcatc ggtaggaggg gtacaccagc agtcatctac      5520
     agtgatcaag gtacgaattt ccggggcgca agtaaggagc tgaaaaccgc tatggacgac      5580
     ttagataagg agcggttgaa gggcgagttc actactcgtc acactacatg gagtttcaac      5640
     ccaccagcct ctccgcacat gggcggagcg tgggagcgcc taatccgcac agtcaagcaa      5700
     aacctcaata agctgctgtt gaatcgtacg atgtcatatg aagtcctcga aaatctactt      5760
     attgaagtag agaacgtggt caactcccgg ccactaacca gtattccctt ggaagacgat      5820
     gaatctccgg tgctcactcc gaaccacttc ctactgggat catccaacgg tttgaagtca      5880
     tgggcacctc tggatgatag cccagccgcc ctcaaaaatt gttggcagct ctctcagagt      5940
     ttggctaacc aattttggat acaatggtta cgagattacc tgccatcgat aacacgtcgt      6000
     acgaaatggt ttaccccaac gaagccaatt gaagttggtg acatagtcat tgtcgcggat      6060
     ccaaaccttc ctcgaaactg ctggcccaag gggcgtataa tatctactaa gcccggagct      6120
     gacggccaag taaggtgggc cacagtccag actacaagcg gtatctatga gcgtcctgcc      6180
     ttgaagctcg ccgtactaga cgtgggcgtc tgtaaggata cgcctcagga tgaccatcgg      6240
     cgcatcccgg gggggag                                                     6257
//
ID   BEL-713_AA-LTR repbase;    DNA;    INV; 836 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-713_AA-I;
KW   BEL-713_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-836
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-836
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 360-360 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 836 BP; 290 A; 166 C; 136 G; 244 T; 0 other;
     tgttgatccc gccacgtcca aagatccgtc gagccccaac gtccccactg ctgtgaacgt        60
     gagtggtcaa acttgtccac acccaaaccg cacaaaaggg attgcgggtc gtgtacaagg       120
     tcatgggatg aagttgcgag caaagggaag agcgatcgac gacaaaacaa aatagcaatt       180
     gttaaaagct atagtgcctg aatccttggt ctgctaaata atacaaattt tgcctaaaat       240
     ctatcctaat tattatagtt aaaacactta aacatctaaa ttcttaatct atacactatc       300
     gttaatcagg taaaacaatg atacattacg aattattaca agtattctta tctactgcat       360
     atcatgcttt acagtgaaat cttacatgca aattggagta cggaattgaa ctgaattagt       420
     ttccttatct taacttatca tacggtgaga acatgcactg aataagtctt atacctaaat       480
     aaccatattt aaatagtagg tgtatatgta caacagaaag gcgagttttt cgatactcta       540
     tctacccatc agtttaatag atctctggta agaaagtcat gcataaactg attgaacttg       600
     aagccttaca attacttatc aattaggtag tgttctaagc aaatccgcag ttctcaactt       660
     tgaacgctct aaagttggcg ataacgaatc accaaaagtg agttacaaat tattagtata       720
     caaactaagg cattataact aattctaaac gtaaatttac aggaaatttg taaccgtttt       780
     cctaccctca ctggaataaa gttaacaaac tctaccggtt cgtttatctc ccaaca           836
//
ID   BEL-714_AA-I repbase;    DNA;    INV; 6275 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-714_;
KW   BEL-714_AA-I; BEL-714_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6275
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6275
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 422-422 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..6274
FT                 /product="BEL-714_AA-I_1p"
FT                 /translation="MSNRSHEAETAARKQGLQSSTPTEKCNICQGTNRGRL
FT                 WRCNICRNWNHPICIGIESDNENQKFVCPQCQPLTGAPKQTFVAAPTVAPS
FT                 TTVPIEYVNMSWSQISPVTTLTSTVPVYVPHTVVGSSYSVMPRYSIAPSSS
FT                 YSSPFLPTNQAFANTFPVLSNLFQAMPSIQNPLRPSLLGQPCSNQRFDGPS
FT                 TVASVGEPLQAQPVPTSTSLPTASSLYQSPSTLQGVVPSASVVSIGEPIQI
FT                 APTLPPCDPQNNQSIVQADARSQISKATGSRLSTRQQQKQLELEMLDEHRK
FT                 LQEQEEASKREYLRRRYELLQEIASETSSVSGISIVEDGPNDKVNAWLRSG
FT                 IPKRNTTHTLTTSQVHYPGHSRSRSAALPEISGIPTQNVADNRPPEGRQHY
FT                 EIQDDSRAPPRSIRFADMSAPNFDVVQRSTPRRISSRSDYGNNLTHEQVAA
FT                 RQAVSRELPVFSGSPEEWPLFYSTFNSTTEMCGYTQEENLIRLQKGLKGKA
FT                 YDAVKCRLMHPSNVPGIIATLKMLYGNPEIIIHHLIAKINAAPAPKADKLD
FT                 TVIEFALTVQNLCATIEACELLEYSYNVVLLRELVDKLPATLKLDWAKHRR
FT                 TLSNINLSTFSEWLYDLAETVCPIASLSGARSVKNGPAFLNAHCAELDAAV
FT                 SEENRSDAINITLKTCAACKGDCINLEKCQRFLDLGYNARWTVIKEAGMCR
FT                 KCLKKHKGPCKSQRTCGENGCSYKHHPLLHNTQRDDTVVSKNQTSKANSEE
FT                 SNLKRLDERDCNAHHSTAMKTLFRVVPVILYGRDKALKSYAFLDDGSSWTL
FT                 MDAGLAAELGLDGEPEPICLRWTGDKHRYEKKSKVVHVDISGTGENSKRYP
FT                 LREVHTVSNLGLFHQSLRMDDLVRQYHHLKGVSAESYENVQPRLLIGVNNA
FT                 NLGHPQRSREGGMYEPLATKTRLGWIIHGGSDSGEFIGYHDWNICDCTENS
FT                 NTRLHREMQEYFSLDSLGISKPVRLIVSKEDQRAQDILQTMFRTENGRFVT
FT                 RLLWKFENFRLPNSKPVALQRMRCLDSRLRREPKLAEAMQQKIDDYLKQGY
FT                 IRKLTQAELMQPTSRVWYLPIFPVFNPHKPGKLRIVWDAAAKSQGISLNTM
FT                 LLKGPDQLTSLNSVLYQFREHKVAICGDIKEMFHQTLIHDEDQNCQRFLWK
FT                 EHPTDQEPSVFVMQVMTFGASCSPSCAQYAKNLNAKEHAGDYPEASEAIVK
FT                 KHYVDDMLASVETEEEAIKLAKDVRHVHAQAGYEMRNWLSNSSNVLNALEV
FT                 DKKQEKSLNITSDLATEKILGMWWCTATDTFTYKLSPKHNIELLAGKRKPT
FT                 KREMLRTLMAIFDPLGLISHLLIFLKILLQEVWRCSIGWDDEISEVLHDKW
FT                 KLWLRFLPTMESVRIPRCYRNAISFGEDTNVQLHIFVDASEFAYAAVVYLR
FT                 FEQHGKVECAIVAAKARVAPLRFISIPRLELQGAVIGSRLAETVASSISFK
FT                 IDKRVYWTDSRDVLCWIRSDHRRYSQFVAFRVSELLETTTVSDWRWVCSKN
FT                 NVADEATKWQRQPDFQSESRWFNAPDFLYNDPEHWPAEPVHGKDTKEELRT
FT                 HLLHHGSVQESVIEFKYYGTWERLLRVTARLFRYTWNLRQTVVRGKRRSGP
FT                 LSKSELQRASLYLYQQVQQEAYPEEVKILTSSEKHQIPKCSAIYSFAPFLD
FT                 EHGIIRMRGRIDNCEYATVDARNPIILPKDHYVTRLIVLNYHVRYLHGNHE
FT                 TAINEVRQMFRIPKLRVLYKTVRSGCQVCKNQKAKPSPPMMGDLPSARLAA
FT                 FSRPFSYIGVDYFGPMYVAVGRRLEKRWGVLITCLTVRAIHIEIAHSLNAD
FT                 SCIMAMRNFMARRGVPIRIFSDRGTNFVATNKELHLALKEMDQDHMIREIV
FT                 TEWEFIPPASPHMGGSWERLVRSVKVNLQKMKPRRNPSDESLRNTLIEIEN
FT                 IINSRPLTFVPVDDPEEPVLTPNHFLMGSSSGLKPAIPLDDSAQTLRRAWR
FT                 ATQAEANLFWKRWVHYYLPEITRRSKWXNKVKPICMNDVVVVVDPASPRNC
FT                 WPLGRVISVKKSKDGQVRTATVQTQNGIYERPAAKLAVLDVRRDGTVSQEP
FT                 GVPGG"
XX
SQ   Sequence 6275 BP; 1902 A; 1455 C; 1447 G; 1470 T; 1 other;
     tttttaaaaa aatcgtttat tcgcgagaat gtccaaccga tcccacgaag ccgaaaccgc        60
     tgcaagaaaa cagggactgc agagctccac accgacagaa aaatgcaaca tttgtcaagg       120
     cacaaaccgc ggtcgtctgt ggagatgcaa tatatgtcgt aattggaatc atcccatctg       180
     cattggcata gagtcggata acgaaaacca gaaattcgtg tgcccacagt gtcaaccact       240
     tacaggcgct ccaaagcaaa catttgtagc agcacccaca gtggctccct caaccacagt       300
     accaatcgag tatgtgaata tgtcatggtc tcagatatca cccgtcacga cgctaacgtc       360
     gacggtacct gtgtacgtgc cacataccgt agttggaagc tcgtatagtg ttatgccgag       420
     atactcgatc gctccatcat cttcgtatag ctcaccattt ctcccaacca accaggcatt       480
     tgcaaataca tttccagtac tatccaatct cttccaagca atgccatcga ttcaaaatcc       540
     tctgcgtcca tcactgttag gccaaccgtg ttcgaatcaa cggtttgacg gaccaagtac       600
     tgtcgcatcc gtcggagaac ccttgcaagc tcaacctgta ccaacttcga ctagtcttcc       660
     gacagcttca tcattatatc agtcaccatc gacactgcaa ggtgtagtac catcagcttc       720
     cgttgtatct attggagaac caatacaaat agcaccgacg ctgcctccgt gtgacccgca       780
     gaacaaccaa tctatagttc aagcggatgc cagaagtcag atttcaaagg ctacaggttc       840
     ccgtttatcc accagacaac aacaaaagca gttggagctg gaaatgttgg atgaacatag       900
     gaagttgcag gagcaggaag aggcgagtaa gcgggaatat cttcgtagac ggtatgagct       960
     gttgcaagag attgccagtg aaacatcgtc cgtatccgga attagtatag tagaagatgg      1020
     gcccaacgat aaggtcaatg catggcttcg gagcggaata ccaaaacgta acacaactca      1080
     caccttgaca acatcacagg tacattaccc tggccattca aggtcaaggt cagccgcgct      1140
     acccgaaata tcaggcatcc ccacccaaaa tgtagctgac aacagaccgc cggaaggtag      1200
     acagcattat gagatacaag acgacagtcg agctccgcct agaagcataa ggttcgccga      1260
     catgagtgca cctaatttcg acgtagttca gcgatcaacg ccgaggcgaa tttcatcacg      1320
     gtcagactat ggtaataatc tgacgcacga acaagtagct gctcgacaag ctgtttcccg      1380
     tgaactaccg gtttttagcg gctcacctga agagtggcca ttattctact ccacgttcaa      1440
     ctcaacaacg gaaatgtgtg gctatacaca agaagaaaac cttatacgtc tacaaaaggg      1500
     ccttaaagga aaggcatacg atgcggtaaa gtgcaggttg atgcacccga gtaacgttcc      1560
     tggaatcatc gctacgctta aaatgctcta tggaaatcct gagattataa ttcaccacct      1620
     aatagcaaag attaacgctg ctcccgctcc caaagccgat aagctggata ctgttattga      1680
     gtttgccctg acagttcaaa atttatgtgc aactattgag gcatgtgagc ttttagagta      1740
     ctcctacaac gttgtactac taagagaact ggtcgataaa ctaccagcta cgctgaaact      1800
     ggactgggcg aagcacaggc gcactctatc gaatattaat ctgtcgacgt tttcagaatg      1860
     gctctatgat cttgctgaaa cggtgtgccc tatagcatcg ttgagtggcg cacgttctgt      1920
     taaaaatggg cctgcctttc tgaatgctca ctgcgcagaa cttgacgctg cagtatccga      1980
     agaaaataga tcagatgcga tcaacataac tttgaaaaca tgtgcagctt gtaaaggtga      2040
     ctgtatcaac ctcgaaaagt gtcagcggtt tctagatcta ggatacaacg ccagatggac      2100
     agtgattaaa gaggctggaa tgtgcagaaa atgccttaag aaacataagg gaccttgcaa      2160
     atcacaacga acatgtggag aaaatggatg cagctacaaa catcaccctc tgcttcataa      2220
     tactcaacgc gatgatacag tagtgtctaa aaaccaaacg agtaaagcga atagcgagga      2280
     atcaaactta aaacgtcttg acgagcgaga ctgcaacgcc catcacagca cggccatgaa      2340
     gacactgttt cgtgtcgtac cggtaatttt gtacggtcgc gataaagctc ttaaatccta      2400
     cgcattttta gacgacggat cctcatggac tctaatggat gcagggctcg cagcggaatt      2460
     aggcttggat ggtgaaccag aaccaatatg tttaagatgg actggcgata aacaccggta      2520
     tgaaaaaaaa tcgaaagtgg tgcatgtcga catttctgga acaggagaaa actccaagag      2580
     gtaccctttg cgagaagttc atactgtctc aaaccttgga ctttttcatc aatcgcttcg      2640
     catggatgat ctagttcgcc agtaccacca ccttaaagga gtttcagccg aatcgtacga      2700
     aaacgttcag ccacgcctcc tcatcggagt aaacaatgct aatctaggac atccacaaag      2760
     gagcagagaa ggaggaatgt atgagccact agctactaag acacgtctag gttggattat      2820
     tcacggtggc tcggatagtg gggaatttat tggataccac gactggaaca tttgtgactg      2880
     cactgaaaac agcaatacga ggctacaccg agagatgcaa gagtattttt cactcgatag      2940
     cttgggaatt tcaaaaccag ttcgccttat agtttcgaaa gaagatcagc gtgctcagga      3000
     cattttgcaa acgatgttcc gaacagaaaa tggtcgattt gtaacacgat tactgtggaa      3060
     gttcgaaaac tttcgtcttc ctaacagtaa gccagtagca ctccaacgta tgcgatgtct      3120
     agattccaga ctacggagag aacctaagct ggctgaagcg atgcagcaaa agatcgacga      3180
     ttatttgaag caaggatata tccggaaact gactcaggca gaactgatgc aaccaacttc      3240
     ccgtgtgtgg tacttgccga tattcccggt gtttaaccca cataaacctg gaaagctaag      3300
     gatcgtctgg gacgcagcag ccaaatctca aggaatatcg ctcaacacaa tgctcttaaa      3360
     aggaccagac caactcacct ccttgaactc cgttctttac cagtttaggg aacacaaggt      3420
     ggccatctgt ggagacatca aggagatgtt ccaccaaaca cttattcatg atgaggatca      3480
     aaactgccaa cggtttctat ggaaggaaca ccccactgat caagaaccga gtgttttcgt      3540
     aatgcaggtc atgacatttg gagcatcgtg ttctccgagc tgtgcccaat acgctaaaaa      3600
     tttgaacgca aaggagcacg ctggagatta ccccgaagcg tctgaggcta tagtgaaaaa      3660
     acactatgtg gacgacatgc tagcaagcgt ggaaaccgaa gaagaagcta ttaaactagc      3720
     gaaagatgtc cgacatgtgc atgctcaagc aggatacgaa atgcgaaatt ggctttcaaa      3780
     ctcctctaac gttctcaatg ccttagaagt ggataaaaaa caagaaaaga gtttgaatat      3840
     aacatctgac ttggcgacgg agaaaatttt gggcatgtgg tggtgtacag cgaccgacac      3900
     gtttacatac aagctgtctc caaaacacaa tatcgagctg cttgccggaa aacgaaagcc      3960
     aaccaagcga gagatgttac gtactctgat ggccatattt gatccattag gactcatttc      4020
     ccacctgttg atcttcttga aaatacttct tcaggaagtt tggcgatgtt ccattggttg      4080
     ggatgatgag atttcagaag tgctacatga caaatggaag ttgtggttac gattccttcc      4140
     gacgatggag tcggtgagaa ttccacgttg ttacaggaac gcgattagct ttggggaaga      4200
     taccaacgta caacttcaca ttttcgtgga tgctagtgag tttgcatatg cagccgtcgt      4260
     ctatctacga tttgagcaac atggtaaagt agagtgtgcg atcgttgcag ccaaagctag      4320
     agtggcccca ttgaggttca tctccatccc tcgactagaa ctacaagggg cagtaattgg      4380
     ctcaaggttg gcagaaactg ttgcaagctc gatatcgttc aagattgaca agcgtgttta      4440
     ctggactgat tcacgtgacg tcctgtgttg gatccgatca gatcatagac gctactcaca      4500
     atttgtagcg ttccgtgtaa gtgagctcct tgaaactact acggtttccg actggcggtg      4560
     ggtgtgctca aaaaacaatg tggcagatga agctacaaag tggcagcgtc aacctgattt      4620
     tcaaagcgaa agtagatggt ttaacgcacc agatttcctt tacaatgatc ccgaacactg      4680
     gccagctgaa cctgttcatg gcaaagatac aaaagaggaa ttacgcactc atcttctcca      4740
     tcacgggagc gtacaagaat ccgtcatcga attcaagtat tatggtacat gggaaagact      4800
     acttcgcgta actgcaagac tgttcaggta cacatggaac cttcgtcaga ccgtggtaag      4860
     aggaaaacgt agatccggcc cgttatcgaa gtctgaacta cagcgtgcct cactgtacct      4920
     ttaccagcaa gtacaacagg aggcgtatcc cgaggaagtg aaaatactaa caagctcaga      4980
     aaagcatcaa atacctaaat gcagtgcaat ctactctttt gcaccatttc tcgacgagca      5040
     tggaataatt cgaatgcgag gaagaattga taactgcgaa tatgccacgg tggacgcaag      5100
     aaaccctata attcttccaa aagatcacta tgtgaccagg ttgatcgtac tgaattacca      5160
     cgtgcgttat cttcatggaa atcacgaaac ggcaatcaac gaggtgcgac aaatgtttcg      5220
     tatcccaaaa ttgagagtgc tgtacaaaac tgtccgatct ggttgtcagg tatgtaaaaa      5280
     ccaaaaagct aaaccaagcc ccccaatgat gggagattta ccgagcgcta ggttagctgc      5340
     cttctcaagg ccgttctcgt acattggggt tgattatttt ggacccatgt acgtagctgt      5400
     tggacgaagg ctcgagaaaa ggtggggcgt actaataaca tgcctaaccg tgagagcaat      5460
     tcacattgaa attgctcact cgctaaatgc tgattcgtgc attatggcca tgcgaaactt      5520
     tatggccaga cggggcgtac ctatacgaat attcagtgac cggggtacca acttcgtggc      5580
     tactaataag gaactccacc tagctttgaa ggagatggat caggatcaca tgatacgaga      5640
     aattgtaacc gagtgggagt tcataccacc tgcatctcca cacatgggtg gtagctggga      5700
     aagactagtc cgctcagtaa aggtaaatct gcagaagatg aaaccccggc gcaatccatc      5760
     cgacgagtct ctacgcaaca cattaatcga aattgaaaac attatcaact cacgcccatt      5820
     gacgtttgta ccagttgatg atcctgaaga gcccgtccta accccgaacc attttctgat      5880
     ggggtcgtcc agtggtttga agccagcaat tccgttagat gatagtgccc aaaccctaag      5940
     gcgagcgtgg cgagcaacgc aagcagaagc caatcttttc tggaaaaggt gggtgcatta      6000
     ctacctgcca gaaataacca gacgctctaa atggtwcaac aaggttaaac caatctgtat      6060
     gaacgatgtt gtagtggttg tcgatcccgc atcacctcga aactgttggc ctttaggacg      6120
     tgtcatctcg gtcaaaaaga gcaaggatgg gcaggtcaga acagcaacgg ttcagaccca      6180
     gaatggcatc tatgaacgcc cagctgccaa gctagcagta cttgatgttc gacgcgatgg      6240
     aacagtaagc caggaacctg gcgtacccgg gggac                                 6275
//
ID   BEL-714_AA-LTR repbase;    DNA;    INV; 772 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-714_AA-I;
KW   BEL-714_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-772
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-772
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 361-361 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 772 BP; 252 A; 134 C; 138 G; 248 T; 0 other;
     tgttacgacc cctcggtcgg cgcgtctcca tcacacacaa caacagcaag ttacggtcag        60
     ctgtggtaat ccatcgcatt gatacgacgt tggtcatgct cttcacaagg ggacaataga       120
     aacggagata ccagatgaaa agtgatttgc gagcagataa ttgttattga actattagct       180
     tatattgcat tttctctaaa tagtgtttaa cgccgaatgc ggctacgtag tgagtttatt       240
     atgaattctc aattattttc ttatttcatg aattattgaa cctaatgatt gaattgttta       300
     acaacatttt ccctaagata acctaaatag tacggatatt gataatttat tactaaggaa       360
     gcctgtctac ttaacttaac tactgatcaa ggcgtaagtt gtcaaaaggt ttaattgaac       420
     taggtaaaat aaaatcatta ttctgattag acaggtgggc acatacgtcg gtacaagatt       480
     tcgttaatgc taatgcagtg ctgtatccag gggtagtaca ggtaaatctc ttatggaacc       540
     aattagaagc agttcttaca tgactctatt tcagaattaa ttcattaaaa taataactat       600
     aagagcacgc cgaccagaac taaataagaa aactaaacgt aagttccaat agtatttagg       660
     tttcatcaca tagttctatg ttgattcaaa ctttgtactt aattgcagga tttttttaat       720
     acatctttat taaaaacacg gaactcttgt ttctggccgg ttgccgataa ca               772
//
ID   BEL-715_AA-I repbase;    DNA;    INV; 6325 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-715_;
KW   BEL-715_AA-I; BEL-715_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6325
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6325
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..5981
FT                 /product="BEL-715_AA-I_1p"
FT                 /translation="MAEEAKMIEEWQQKKQNVIDSVALLEYYVKNFDKEET
FT                 RKEQVEAWAEKLERFYDEFHQMAVKMETLSTEENPIDLKGERQKFDSRYYV
FT                 LRAFYLKQMAKTTSSSSFNHSQPAKPMNIRLPEINLPKFSGRLEDWCVFRD
FT                 SFQSAVGSRSDIGSVEKLHYLKGLVQGEAARILDPIKVSEQGYKDAWRTLT
FT                 LRFENKRQLIKCHIKTLFDTPAMRKESSEELLALVDRFEQQISVLKSLGEP
FT                 ADKWSSLLVYLLTIRLDPCTLREWESYCTRLDTDNIASVLGGIASTSSTTV
FT                 DESTSMPSYVQMVNFLQNYSRVLHAVAPATVDSPFRHKPKPSTKSAAFPVA
FT                 SSLKNPSSPLPASSNSSMPEKPCEKCGQGHYLYHCPEFQRLDVGHRTELVR
FT                 QKNICLNCLRSSSHFARTCSGTRCRVCSRKHHTLLHTDSSDIDSNPSPQST
FT                 DSTCCVALDQAHPNITSDSQDFQQQPSTSATSVDHHLRVHDTSGCPQYALV
FT                 SQSQAAIPGTVFLPTALVNIRSSRGRMITARCLLDCASQRNFVSVGLCEKL
FT                 QLPRLRLPQPITISGIGNTSTLVEHEASVTVFSRISNFSVKSSMLILPSIT
FT                 VKLPQFSVDVREWSIPEHIDLADPTFAVTNSIDMILGAAHFFRILRYGRIS
FT                 LGNDLPLLQNTEFGWVVSGECALENHDHNDPRRCQFSNPCMIDELVNRFWQ
FT                 LEEVQHSKGWSPSERYCEEHFLQNVRRNSEGRYIVQLPKREELLPLLEDNW
FT                 YNATRRFYSLERSLAKDPNKKAMYQKFIHEYLALGHMREIDPNERNKKPRY
FT                 YLPHHAVIKMESTTTKLRTVFDASCQSKSGLSLNDVLLVGPTIQDTLVTIV
FT                 IRFRIFEFVASADIEKMYRQVLVADQDQPLTRIVWRDHPDLPMKIYQLLTV
FT                 TYGTSCAPFLAIRILKKLADDEEDHFPLAAPVLRRDFYVDNLLTGANNASS
FT                 LAATCKQLIAMLASAGLPLRQWSSNNQTVIDSIPRDLRETKTLLDLDREAS
FT                 VTTLGLRWEPATDFLSFKQPKWDVHSRITKREILSQISSLFDPLGLIGPVI
FT                 SKAKILLQGLWKLQLDWDIQVPPAIIIEWQDFQQKLTGLIDLRIPRHVLSP
FT                 GYARLEVHGFSDASEVAYGACLYLRSITSTGSCSVRLLMSKSKVAPIDTKS
FT                 IPRLELCAAHLLAKLLVHAMDSIDISATVYLWTDSTIVLNWLAATPSTWKT
FT                 FVANRVAEIQELSTHAVWNHVPSKENPADLISRGMTLEELTENVLWWHGPP
FT                 WLTSLDLQWPTKYVPTKTPVSEDFEARKIIVLPAIEDSPNDLVSRYSNLRP
FT                 LLRIGALIRRFRENCTRHKNNQDRLVGPLTTTEIDQTLLALIRQAQHDSFE
FT                 KELRQLSSTGKVDRKSKLRFLYPQLVNGVIRLGGRLHNASIQADEKHPILL
FT                 PAKHRLTELIATREHQKTLHAGPGLLLSSLRQKFWPLGGRNLVRQVVHRCI
FT                 TCTRARPTPLEQLMGQLPPVRVTQAYPFENVGIDLAGPLYVRSPIRSRSSP
FT                 FTKAYIVVYVCLVTKAAHLDLVSDLSTEAFIASLRRFTSRRGKPARIFCDN
FT                 ATNFVGARRELEELRKLFLTQQHKDSVSQDCADNGIEFNFIPPRSPSFGGI
FT                 WEACVKSVKTLLRKILGNAHLTEPELQTALIQVEAMLNSRPITPLPDDPSE
FT                 AQVLTPGHFLIGRPLNAVPDPDYQEVPENRLSRFRRVQKLTGHFWSRWHKE
FT                 YLATLQTRYRWNQALDNIAIGSIVVLKEEKVPPLKWPLGRVISVHPGSDGR
FT                 VRVATVKTSTGTTQRVISKLCLLPIEVDPAAVAISATNSPKDGPRSGNRAA
FT                 GRDPGPCSGNRAAGRDPGPCSGNRAAGRVPGPYSGK"
XX
SQ   Sequence 6325 BP; 1556 A; 1752 C; 1490 G; 1527 T; 0 other;
     taaatttggt ccttcgagcc ggatattcga ccgccggtgt aataaaagtt gtccaccgaa        60
     gagtctggaa aggctgtaat ttgccaccgt gaagaggcaa taaattgtca acagtgttgg       120
     aattgatcgc cgtatctgcc ggctaaaagt gctaatttgc gaattatcgc ctcgaagaag       180
     aaaaatagtg cgtgaaaagt gattcccggt agcgtctgta ggccaagaac cgccatcgtg       240
     gagccgccag tgaccaacaa aggtacaatt tcccccccaa aaatccccca ttttgcgcaa       300
     attactttac cgtgagtgct agtgaacgat tgagcaaaag gagttcgtcc ccgtcgtgtg       360
     atcaccgacg gctggtagag tgtgtgcgct accggtgaac aaacaaaatg gcggaagaag       420
     cgaaaatgat cgaagagtgg cagcagaaga agcaaaacgt gatagactct gtagcgttgc       480
     tggagtacta tgtgaagaat ttcgacaaag aggagacccg gaaagagcag gtcgaggctt       540
     gggctgagaa gctcgagcgt ttctacgacg aatttcatca aatggctgtc aagatggaaa       600
     cattatcaac cgaggagaat cccatcgatt tgaaaggtga gcgtcagaaa tttgatagtc       660
     gttattacgt cctgcgagct ttctatttga aacaaatggc aaagaccacc agttcctctt       720
     ctttcaatca ttcccaacct gccaagccaa tgaatatccg gcttcctgaa atcaatctgc       780
     cgaaattcag cggccggttg gaggactggt gcgtcttccg cgattcattc caatctgctg       840
     ttggttcgcg gagtgatatc ggttccgttg agaaactgca ttatctgaaa ggtcttgtgc       900
     aaggtgaagc tgctaggatt ctcgacccga ttaaggttag cgagcagggc tacaaggacg       960
     catggcggac actaacactg cgtttcgaga ataagcggca gctcatcaag tgtcacatca      1020
     agacactctt cgatactcca gcgatgcgca aggagtcatc cgaggagctt ctggcgttgg      1080
     tcgaccgttt cgagcagcaa atctctgtgt taaagagttt aggagaacca gcggacaagt      1140
     ggagttctct tctggtttac ctcttgacta ttcgccttga tccttgcacg ctccgggaat      1200
     gggagagtta ctgcactagg ctcgacacag acaacatcgc ttcggttcta gggggaatcg      1260
     cttcgacatc tagcactacc gttgatgagt caacttctat gccgtcttac gtccagatgg      1320
     tgaacttcct ccagaactat tctcgtgtct tgcatgcagt cgccccagcc acagtagatt      1380
     ctccttttcg tcacaagccc aagccttcga caaaatcagc agcctttcca gtagcatcat      1440
     cgctgaaaaa tccatccagc ccgttaccag ccagttccaa ttctagcatg ccagagaaac      1500
     cgtgtgagaa gtgtggtcag ggccattacc tgtaccactg tccggagttc caaaggttgg      1560
     atgtcggtca ccggaccgaa ctggttaggc agaaaaacat ttgcttgaac tgtttacgat      1620
     catcctccca ctttgctcga acgtgttcgg gcacccgctg ccgagtctgc tcgagaaaac      1680
     accacacgct gcttcatacg gatagcagcg atatcgactc caatccaagc cctcagtcta      1740
     ctgattctac ttgctgcgta gccctcgatc aagcccaccc aaatattacg tccgattcac      1800
     aagatttcca acagcaaccg tcaacttctg ctacttccgt tgatcatcac cttcgtgttc      1860
     acgacacttc cggatgtcca cagtatgctt tggtctcgca atcccaagcc gcgatccccg      1920
     gaaccgtctt ccttccaact gcgctcgtga acattcgaag tagtagagga cgtatgatta      1980
     ctgctcgttg cttgttggac tgtgcttccc aacgaaactt cgtctccgtc ggactgtgcg      2040
     aaaagcttca gctgcctcga cttcgactac cccagcctat cactataagc ggaatcggca      2100
     acaccagcac gctcgtcgaa catgaagcaa gcgtgacagt tttctcccga atttcaaatt      2160
     tttccgtgaa aagctcgatg ctgattcttc cgtcgatcac cgtgaagctt ccgcagttct      2220
     ccgttgacgt tcgtgaatgg tctataccag agcatattga cctcgccgat ccgacgttcg      2280
     ctgtcaccaa tagcatcgac atgatcttgg gagcggctca tttcttccgt attcttcgtt      2340
     acggtcgaat ttctctcggc aacgatctgc ctctgctcca aaataccgaa tttggctggg      2400
     tagtttccgg ggagtgtgcg ctggaaaacc acgaccacaa tgatccccgt cggtgtcaat      2460
     tcagcaatcc ctgtatgatc gatgagttgg ttaatcgctt ctggcagctg gaagaagtgc      2520
     aacactcaaa gggctggtct ccatccgagc gatactgcga agaacatttt ctccagaacg      2580
     tcagacgtaa ttccgaaggc cgttacatcg tacaacttcc caagcgagaa gagctgttac      2640
     cgctgctaga ggacaactgg tacaacgcta cgcgacgttt ctactctttg gaacgatcac      2700
     tagccaaaga tccaaataag aaggcgatgt atcagaagtt cattcacgaa tatcttgcac      2760
     ttggacacat gcgagagatt gaccccaatg agcggaataa aaaaccacgt tactaccttc      2820
     ctcaccacgc agtgatcaag atggaaagca caaccaccaa gctccgtaca gtttttgatg      2880
     catcctgcca atccaaatct ggtttgtctc tcaacgatgt ccttctcgtc gggcctacta      2940
     tccaagacac tctggttacg atcgtcattc gcttccgaat tttcgagttt gttgcctctg      3000
     cagatattga gaaaatgtat cgccaggtgc ttgtggcaga ccaggatcaa ccgctcactc      3060
     gaatcgtttg gcgcgatcat ccggaccttc cgatgaagat ttaccaacta ctcactgtca      3120
     catatggcac tagctgcgct ccatttttgg caatcaggat attgaagaag ctagcagacg      3180
     acgaagaaga tcatttccct ctggcggcac cagtgctccg ccgcgatttc tacgtcgata      3240
     atctgttgac gggtgccaat aatgcttcat ctctcgctgc tacctgcaag cagctcatcg      3300
     cgatgctggc ttctgcaggc cttccgcttc ggcagtggtc ctcgaataat caaactgtta      3360
     tagactccat tccgcgggac cttcgggaga ctaaaacgct actcgacttg gaccgcgaag      3420
     cctctgtcac gacactcgga ttacgctggg agccagctac cgacttcctt tcctttaaac      3480
     aaccgaagtg ggacgtgcac tccaggatta ctaagcgcga aatcctttcg caaatcagca      3540
     gtctatttga cccgctggga ctaatcggtc ctgtgatctc gaaggcaaag attcttctcc      3600
     aaggcttgtg gaaacttcag ctcgattggg atatccaagt tccccccgca atcatcattg      3660
     aatggcaaga ttttcaacag aagctcaccg gtcttatcga tttgcgaatt cctcgccatg      3720
     ttcttagccc aggttacgca cgcttggaag ttcacggttt cagtgacgct tccgaagtag      3780
     catacggtgc gtgcttgtac ctccgttcga tcacctcgac tggatcctgc tccgttcgac      3840
     tgctgatgtc gaaatcgaag gtggctccga tagacacgaa gtcgattcct cgccttgaat      3900
     tgtgcgcagc tcatcttctc gccaagcttt tagtccatgc tatggatagc attgacattt      3960
     ctgccacagt atatctatgg acagactcca ccattgtttt gaactggctc gccgcaacac      4020
     cgtcgacttg gaaaacgttc gtagctaatc gcgttgctga aattcaggag ctcagcacac      4080
     acgcagtctg gaatcatgtt ccgtccaagg aaaatccagc cgatctcatc tctcgaggta      4140
     tgactctcga agagctaacc gaaaatgtgc tttggtggca cggaccacca tggctaacca      4200
     gcttggacct ccagtggccg actaagtacg ttccgacaaa aacacctgtt tctgaagact      4260
     tcgaagcccg caagatcatc gtccttccag cgattgagga ttctccgaac gatctggtgt      4320
     ctcgctactc caatctccgt cctctgctgc gaatcggtgc tctcattcgg cggtttcgcg      4380
     agaactgtac ccgccataag aataatcagg atcgtcttgt tggcccgcta accactactg      4440
     aaattgatca gaccctactt gctctgattc gtcaagcaca acatgattcc tttgaaaagg      4500
     aactccgtca actatcatcc actgggaagg tggatcgcaa atccaagctc cgcttcctgt      4560
     acccacagtt ggtcaacggg gttattaggc ttggcggccg gctacacaat gcaagcattc      4620
     aagccgatga aaagcatccg attcttcttc cggccaagca ccgcttaacg gaacttatcg      4680
     ctacgagaga acaccaaaaa acactccacg ctggtcctgg gttgctgctg tcgtccctcc      4740
     gtcaaaaatt ctggcctctg ggcggccgga acctagtccg gcaagtcgtc cacaggtgca      4800
     taacgtgcac ccgtgcaagg ccaactccgc ttgagcagct gatgggccaa cttcctccgg      4860
     tgcgagtcac ccaagcgtac ccattcgaga acgtcggcat agaccttgcc ggtccgctat      4920
     acgtgcgctc gcccatccgg agcagaagct ctccgttcac caaggcgtac attgtggtgt      4980
     acgtctgtct tgtcaccaaa gcagcgcatc ttgatcttgt ttccgacctt agcactgagg      5040
     cttttattgc tagcctccga cgattcacta gtcgccgagg caaacctgcg cgcatctttt      5100
     gcgataatgc aaccaacttc gttggtgctc ggagagagct agaggagctt cgaaagctct      5160
     tcctgacgca gcagcataaa gattcggtat cacaagactg cgcagataat ggaattgaat      5220
     tcaattttat tccacctcga tctccgtcct tcggcggcat atgggaagcc tgcgtaaaat      5280
     ccgtcaagac cctgctccgc aagatcctcg gcaatgccca tctcacggag cccgaacttc      5340
     aaacagcgct gatccaggtt gaggcaatgc tgaattctcg ccccatcaca ccgctaccag      5400
     acgacccgtc cgaagcgcaa gtgcttactc cggggcattt cctgatcggc agaccgctga      5460
     atgcggtgcc cgatcccgac tatcaggagg tacctgagaa tcgactctct cggttcagaa      5520
     gagtccaaaa actcactgga catttttggt ctaggtggca caaggagtac ctggccaccc      5580
     tgcaaactcg ataccgctgg aatcaagctc tcgacaacat tgccatagga tctatcgtcg      5640
     ttctcaaaga agaaaaagtt ccaccactaa agtggcccct cggtcgcgtg atcagcgttc      5700
     atcctggttc cgacggacga gtacgtgtgg ccacggtgaa aaccagcacg ggtacaactc      5760
     agcgtgttat atcaaagttg tgccttcttc cgattgaagt tgatcctgct gccgttgcaa      5820
     tatccgcaac aaactcgcca aaagatggcc ctcgctcggg gaacagagcc gccggacgag      5880
     atcccggccc ttgctcaggg aatagagccg ccggacgaga tcccggccct tgctcaggga      5940
     atagagccgc cggacgagtt cccggcccct actcggggaa atgagtcgcc agacgagttc      6000
     ctggcccatg ctcgggggaa tcgagcggtt cctggtgcat ctgtaacgag ttaagccttc      6060
     catgtgggtt cgccccatgg accggactta acacaagtta agtaccacct tttctattat      6120
     tcgtatccaa caatctggcc acagatgttc cgcttttcca gcaatcatcc gcaaccatcc      6180
     atcgtgatcc cggagctgga gagtggcctg tgtcagcgca ccacgctcga acccgacgcc      6240
     cttcccaacc gaagatgttt cgcttcaagc agaagtgcat ccgccgatga ttgatgaaat      6300
     cgtgaaattt cattggcggc cggaa                                            6325
//
ID   BEL-715_AA-LTR repbase;    DNA;    INV; 459 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-715_AA-I;
KW   BEL-715_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-459
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-459
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 373-373 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 459 BP; 157 A; 98 C; 85 G; 119 T; 0 other;
     tgttcaaaac actgcaaatt aaaaatgaaa tttcttgata cacaacacat tgtatataca        60
     ctcctacact tcatgctgaa ctacacttta taatataaga aactgaatta aatagacttg       120
     acccgcacac cgcacccagt gtgcaacaaa atgcgcaaac ctgcaacaca cctagctgtc       180
     aaagcgaagc ataacagcat aaccaaaatg taaataatag cataagaaat aaagttagtt       240
     gaattccgct ttccaccgtg tttgaacgca acgttcccgt tttcggtttt tgtggtgtcc       300
     gaaagtacca agcgcgagtt caatttacct tccacatagt gccgtgtgat ttgtgcgatt       360
     tccaatgcca aattgagctg gaaagtgaaa gaaacgaggt ttctgcgctg ggaagtatcc       420
     cacgatctat taggaagaag agtggttaag tgctaaaca                              459
//
ID   BEL-716_AA-I repbase;    DNA;    INV; 5940 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-716_;
KW   BEL-716_AA-I; BEL-716_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5940
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5940
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 423-423 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..5938
FT                 /product="BEL-716_AA-I_1p"
FT                 /translation="MMSEQHEKTPDNSNIYSCVACHRPDSADNIVACDKCS
FT                 DWWHYSCAGVTDSVRATKWYCRTCLPQPAKSVSSASTSASRRARLELSMQR
FT                 LEEQRELDRKQMELELEKRYMKEKYQLLEETLHEEFETRSVRSRIDEIESR
FT                 AKHTTQWVQEQTVANAAELECSGPVSTKEIRQEVVPTGVPAPIVHVTGVEE
FT                 GAVGGIEGVIRDPQIPPDGNAFYKLQQMLQHCKKDQQPTLQQIQELQEQLQ
FT                 LCQIRIQQESTPVSSRLPTVSKGAIRKTNMNETVKLAVDAPHLELSSPMVP
FT                 MTLGSQRNQQQREALQTQNLFSHSLPTVRHTVNPPGPIGSSIVDRQGPTPE
FT                 QLAARQVMPRDLPDFSGDPEEWPLFVSCYNNTTNACGYNNAENLSRLQRCL
FT                 KGSALKSVRYYLMSPESVPDVMRTLKTLFGRPEMIINKLIRNVRETPPPKP
FT                 EKLESLIEFGMAIRNLTQHLIAAGQQPHLSNPILLQELVDKLPAGVKLQWA
FT                 QHLQHHPVASLQIFSQFMSTVVDSVSKVVVYVGEPTQRNDKRREKGFLHAH
FT                 AESSGTSVLQPSVKRCPVCNKEGHRVPECATFKKGSVENRWKNVHALKLCR
FT                 CCLNIHGRRACRNTNRCGVNGCEFRHHPMLHTSPPPPPIEGGNQRSNQSSE
FT                 NHTYHHCGQSVLFRILPVILHGPTRSMKVFAFLDEGSSSTLIEHELAGQLG
FT                 VEGRNSPLCLTWTANMSRLESKSQMISIDVSGIDQQKLYHLPNVRTVEILN
FT                 LPGQTLRFGELQRHFKHLKGLTVESYEDAVPRLLIGLRNLELAVPLETRAG
FT                 DLGPIATKTRLGWCVYGNLDYQHEREHVSLHICECDTNGKLESMMKEYFNA
FT                 DYTGVALIEPLMSEENKRAQRILEETTRRVGNRFQTGLIWRYDDVDLPDSF
FT                 PMALQRLKCLERRMARDVALKENLHRQVHEYQAKGYAHRLTQEELLEANPK
FT                 RVWYLPISAVTNPNKPGKVRLVWDAAAKVAGVSLNSLLLPGPDLLTPLTHV
FT                 LFRFRQYPVAVSGDIKEMFHQIGIVEADRHSQRFLWRDNPEQTPQIFAMDV
FT                 AIFGATCSPSSAQFVKNKNANEFASQYPKAANDIVRCHYVDDYLGSYETTE
FT                 EAMEVAEGVRKVHSKGGFEIRNWASNNQAVVQHLGGEAVSGTKELISKGDN
FT                 TERVLGLLWQAEADELRFSTTFRKEISQLIIDEVRPTKRQILKCIMSLFDP
FT                 LGILAAFLVHGKIMMQLVWRTKIQWDERVDDHIYDLWKKWISLFGKIEELR
FT                 VPRCYFQQASAEMYSTLQLHIFVDASEDAYSAVAYFRVDTHDKGVQCTLVA
FT                 AKTKVAPIQHVTVPRLELMAAVLGVRLATLIADGHSLPISRRVFWSDSRTT
FT                 LAWIGSEHRRYRQFVACRIGEILSSTVVDEWKWVPSKLNVADEATKWGKGP
FT                 CFDANSRWYHGPDFLYADELSWPNTTQNIITTEEELRPCYVHQTLKFPLLQ
FT                 FERFSKWKRLLRTVAYVRRFVSVCRRRIQGHYISTMLTQPELQDAEILLWK
FT                 MAQYDGYADELAIIRKNIDLPVDKRIPLEKNSVLYTLTPVLDEQEVLRVDG
FT                 RIGSLQIAPADMKRPIILPRHHRVTFLIVDDYHRKYLHANSETIVNEVRQR
FT                 FYIPRLRVLVRSVANRCQECKIKKAKPSTPRMGSLPQGRLSPFLRPFSYVG
FT                 LDYFGPIIVKIGRSNTKRWIALFTCLTIRAVHVEVAFDLSTQSCIACIRRF
FT                 VARRGAPVEIYSDNGRNFIGAQRVLKEQVARIYEDAAVTFTNAQTKWLFIP
FT                 PYTPHMGGSWERLVRSIKVAMRSLPQERKLDDDALHTMAVEAEAIVNTRPL
FT                 TYLPLDSAQQEALTPNHFLLGSSSGVKQPASNMADTPRAGRLMWNLIQYNL
FT                 DHFWRRWIREYLPTLTKRTKWFGESRALHVGDLVIVIDDMKRNGWIRGKVL
FT                 EVNPGKDGRVRQAVVQTSDGVFRRPASKLAILEVKQIDKDEHDTHLYEEG"
XX
SQ   Sequence 5940 BP; 1706 A; 1378 C; 1443 G; 1413 T; 0 other;
     aaacttcaag aaattcatga tgtccgagca gcatgagaaa actccggata acagcaacat        60
     ctacagctgt gttgcatgtc accgaccaga ctccgccgat aacatcgtcg cttgtgacaa       120
     atgctctgac tggtggcact attcctgcgc cggcgttact gattccgtaa gagcgacgaa       180
     atggtattgc cgaacttgtc tcccgcaacc agcaaagtca gtttccagcg cctcgacgtc       240
     ggcttcccgg agagctcgct tagaactaag catgcagcgc ctggaggagc agcgagagct       300
     agacaggaaa caaatggagc tcgagttgga gaagagatac atgaaggaga agtaccagct       360
     attagaggaa acgttacatg aggagtttga aactcgaagc gtacgaagtc ggattgacga       420
     gattgagtct cgagcaaagc acacaacaca atgggttcag gaacaaacgg tcgcgaatgc       480
     agcagaactt gaatgtagtg gtcctgtctc cacaaaggaa attcgacaag aggttgttcc       540
     cacaggagta ccggctccaa tcgtacacgt cacgggtgtc gaagaaggag ctgtaggagg       600
     aattgaaggt gtgattagag atccccagat tcccccagat ggcaatgcat tctacaaatt       660
     acagcaaatg ctacaacatt gcaaaaaaga tcaacaacca actctgcagc agatacaaga       720
     actgcaggag cagctacagc tgtgtcagat tcgtatacag caagaatcaa cacctgtatc       780
     ttcacgacta ccgaccgttt caaaaggagc cattcgtaaa acgaatatga acgaaaccgt       840
     caaactggct gttgacgctc cacatctcga attatccagt cccatggttc caatgacgct       900
     gggttcccaa aggaatcaac aacaacgaga ggcacttcaa acccaaaatc ttttctctca       960
     ctctttaccg accgtacgtc ataccgtgaa tccgcctggt cccattggtt catcgatcgt      1020
     tgatcgtcaa ggtccgactc cggaacagct cgccgcaaga caagttatgc ctcgtgattt      1080
     gccagatttt tccggcgatc ccgaagagtg gccgctgttt gtaagttgtt acaacaacac      1140
     gacgaatgct tgtggatata acaacgccga gaacctttct cgactccaga ggtgtctaaa      1200
     aggtagtgcg ctcaagtcag ttaggtatta cctgatgtca ccggaatcgg ttccagatgt      1260
     tatgaggacc ctgaaaacgc tatttggccg ccctgagatg ataatcaaca aactaatcag      1320
     gaatgttcgt gaaactcccc ctccaaaacc ggaaaagcta gaatcgctga ttgagttcgg      1380
     gatggctata cggaatctca ctcagcatct aatcgccgcc ggtcagcaac cacatctctc      1440
     taacccaatt ctgttgcaag aattagtgga caaactgcca gccggagtta aattgcaatg      1500
     ggcccaacat cttcagcatc atccggttgc ttccttgcaa attttcagcc agttcatgtc      1560
     gactgttgtg gattcagtca gcaaggtagt agtgtacgtt ggtgaaccga cccagagaaa      1620
     cgacaagcgc cgggagaaag gatttcttca cgcacacgcc gaatcaagtg gaaccagcgt      1680
     acttcaaccg tcagtgaaac gatgtccagt ttgcaacaaa gaaggtcatc gcgtaccaga      1740
     gtgcgcgacg ttcaagaagg gcagtgttga aaaccgatgg aagaacgtcc atgccctgaa      1800
     actgtgccgt tgctgtttga acattcatgg ccgacgagca tgtaggaaca ccaatcgatg      1860
     cggagtcaac ggctgtgaat ttcgtcacca tccaatgttg catacgtcac ctcccccgcc      1920
     tccaatcgaa ggtggcaatc agcgttccaa tcaatcatcc gaaaaccaca cgtatcacca      1980
     ctgtggacaa tcggtgttgt tcagaatcct tccagtgata cttcacgggc ctactaggtc      2040
     tatgaaagtt tttgcatttt tagatgaggg ttcgtcttca actctcatcg aacatgagct      2100
     tgccggacaa ttgggagttg aagggcgaaa ttctccgctg tgcttaacgt ggacggcaaa      2160
     tatgtctcga ttggagtcaa aatcacaaat gatttccata gatgtatccg gaattgatca      2220
     gcaaaaactt tatcacctgc caaatgttag aaccgttgaa attctcaatc ttcctggtca      2280
     aactttgcgt ttcggcgaat tgcaaagaca tttcaaacac ctaaaaggtc tcacagttga      2340
     aagctacgaa gatgctgtgc cgcgtctttt gataggactt cgcaacctcg agctagcagt      2400
     tccactggaa accagagcag gagatcttgg accgatagca actaaaacac gtttaggttg      2460
     gtgcgtttat ggaaatctcg attatcaaca cgaacgtgag catgtcagcc ttcatatctg      2520
     cgaatgcgat accaacggca aactggaatc gatgatgaag gagtatttca atgcagacta      2580
     taccggagtt gcattaattg aaccgctgat gtccgaggag aacaaacgtg ctcaacggat      2640
     tcttgaagag acgacgcgtc gagtcggaaa tcggtttcag accggattga tctggcggta      2700
     tgacgatgta gatctgccag acagctttcc gatggctctc cagcgtttaa aatgtttgga      2760
     acgacggatg gcgcgagatg ttgctttgaa ggagaatctt catcgtcagg tgcacgagta      2820
     ccaggcaaag gggtatgccc atcgtctaac tcaggaagaa ctgctcgagg cgaaccctaa      2880
     aagagtgtgg tacttgccca tcagcgctgt gacaaaccca aataagccgg gaaaagttcg      2940
     cctcgtttgg gatgcggcag cgaaagtcgc cggagtttct ttgaatagtc tccttctacc      3000
     aggaccagat ctgttaacac cattaactca tgtcctcttc cgcttccggc aatatccggt      3060
     ggccgtctct ggcgacatta aggagatgtt ccaccagatc ggtattgtgg aagccgatcg      3120
     ccattcgcaa cgttttctat ggcgtgataa ccccgagcaa actccacaaa tctttgcgat      3180
     ggacgttgcc atttttggtg caacatgctc accatcgtcc gcgcaatttg tgaaaaataa      3240
     aaacgcgaat gagttcgcat cccagtaccc aaaagcagca aacgatatag taaggtgtca      3300
     ctatgtggac gactacctgg ggagctacga gaccacagaa gaggcgatgg aagttgctga      3360
     gggtgtgagg aaggtgcatt cgaagggtgg attcgaaatc cgcaattggg catcgaacaa      3420
     ccaagctgtg gtgcaacatt tgggcggaga agcagtgagc ggcacaaaag agttgatttc      3480
     aaaaggtgac aacaccgagc gagtacttgg attgctttgg caagctgaag cagacgaatt      3540
     gcgattttca acgactttcc gtaaagaaat ttctcaactc attatcgacg aagtcaggcc      3600
     aacaaaaaga caaattttaa agtgcatcat gagtctattt gacccacttg gaatattagc      3660
     agcgtttttg gtgcatggta aaattatgat gcaactggtg tggagaacaa aaattcaatg      3720
     ggatgaacgc gttgacgacc acatctacga tctttggaag aaatggatct ccctattcgg      3780
     caaaatcgaa gaactccgag tgccacgttg ttacttccag caagcaagcg ctgaaatgta      3840
     ctcgaccctt caactccata tcttcgtgga cgcaagtgag gacgcgtact cggcagttgc      3900
     atatttccgg gtagatactc acgacaaagg tgttcagtgc acattagtgg cagccaaaac      3960
     aaaagtggct ccaatacaac acgtcaccgt cccgcgtttg gagctaatgg cagctgtatt      4020
     gggagtccga cttgcaaccc tcatcgctga tggacattct ttgccaattt cacgaagagt      4080
     cttctggtcc gattcaagaa ccacactagc atggatcggc tccgaacatc gtcgttatcg      4140
     tcaattcgtc gcctgtagaa tcggagaaat actatcttca acggtcgtgg acgaatggaa      4200
     gtgggtgccg agcaaactga atgttgccga cgaagccacc aaatggggta aaggtccctg      4260
     ctttgacgct aatagccgct ggtaccatgg gcctgatttt ttatacgctg atgaactatc      4320
     ttggccgaat acaactcaaa acatcataac taccgaagag gaactgagac catgctacgt      4380
     tcaccaaacg ttgaaatttc cgctgcttca gtttgaacgt ttttccaagt ggaaacgttt      4440
     gctacggacg gtagcttatg taagacgctt tgtgagcgtt tgtagacgac gaatacaagg      4500
     gcactacatc agcacaatgc tgacgcaacc agaactgcag gatgcggaaa tattgttatg      4560
     gaaaatggct cagtacgacg gatacgcaga cgagctagcc attattagaa aaaatataga      4620
     tctgcctgtt gataaacgaa ttccgttgga gaaaaacagc gttctataca cactaactcc      4680
     ggtattagat gagcaagaag ttctccgcgt tgatggtcgc ataggctccc tacaaatagc      4740
     ccctgcggac atgaaaagac caatcatcct tccaaggcat catcgagtga ctttcctgat      4800
     tgttgatgat tatcaccgca agtatcttca cgccaactca gagacgattg taaatgaggt      4860
     aaggcaacgt ttttatatac cacgactccg tgtgttagtc agaagtgtgg caaatagatg      4920
     tcaagaatgc aagattaaga aggcgaagcc atctacgcct agaatgggat ctttaccaca      4980
     aggaagatta tcaccatttc ttcgtccatt tagctatgtt gggttggact attttggtcc      5040
     tattatcgtg aagataggca ggtccaacac taaacgttgg attgcactct ttacgtgcct      5100
     taccattcga gctgtgcacg tagaggttgc ttttgattta tccacccagt cttgcattgc      5160
     atgcattcga agatttgtcg ctagaagagg tgctcctgtc gagatttact ctgataacgg      5220
     gagaaatttc ataggggcac aacgagtttt gaaagagcaa gttgctcgta tctatgagga      5280
     tgcggcagta acattcacca acgctcaaac taaatggctg ttcatcccac cttacacccc      5340
     acacatggga ggctcatggg agcgtttagt aagatctatc aaagttgcca tgcgtagcct      5400
     accacaggag cgtaaactgg atgacgatgc gttgcatact atggcagtgg aagcggaggc      5460
     tatcgtcaac acacggccgt taacatatct accgctagat tctgcgcagc aggaagccct      5520
     tacaccaaac cattttttgc tggggtcttc tagcggcgtt aaacaaccag caagcaacat      5580
     ggcagatact ccacgagcag gtcgtctaat gtggaatttg atccaatata accttgatca      5640
     tttttggcgg cgctggatca gagaatattt gcctacatta acaaaaagga ccaaatggtt      5700
     tggagaatcg agagccctgc atgtggggga cttagttatc gtaattgacg atatgaaacg      5760
     gaatggctgg attcgtggaa aagtgctgga ggtcaaccct ggaaaggacg gcagggtgag      5820
     acaggctgta gtccagacgt ctgacggggt gttccggaga ccagcgtcca agttggccat      5880
     tctagaggtg aagcaaatcg ataaagacga gcatgatacc catctttatg aggaggggaa      5940
//
ID   BEL-716_AA-LTR repbase;    DNA;    INV; 467 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-716_AA-I;
KW   BEL-716_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-467
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-467
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 362-362 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 467 BP; 166 A; 80 C; 75 G; 146 T; 0 other;
     tgttagtact ggcaaccctt ccgagttcgc tgggctgaag ttagcagcga tacataccat        60
     ccgtcattat gactgctcag gagatgtgtc agaagatgga acaatattcg acgagaaaag       120
     acaaaacgca cgttatttct caccttaaag taataagtga aatttaaata ctattgttac       180
     tccaaaaatt tagtaaataa cattttttga agtccaattt cgtaagcggt gagaattaat       240
     aaattgaatt gccctataca agttgtttat acttaaaatt tattacagaa ttcaattcgc       300
     tatactctaa cctaaattgt ttgtttgaag aacgaagaaa cgataaagca ctgaatttgt       360
     aagatccttt ataattaaac taaacctata taactaaaat atatctaaat tgcagcttga       420
     agcactgcgc tgacaagaat cgtgtcttat tactctgttc tcgaaca                     467
//
ID   BEL-717_AA-I repbase;    DNA;    INV; 5764 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-717_;
KW   BEL-717_AA-I; BEL-717_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5764
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5764
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 424-424 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..5763
FT                 /product="BEL-717_AA-I_1p"
FT                 /translation="MSFKKAGLRKNVMHLKVLRRKRDNIVGSAKLIQQFNE
FT                 QYDDSKIDQVAIRIERLDGLWDKFEDTEDEIEALEDHEEGFSETRQEFQNL
FT                 YFDLKASLVSKLPRAVTTNSPSPGPSSSRHSVPPANQPMSVKLPEIKIPEF
FT                 GGRPDEWIEFRDLFKSLVHTNPQIPAVQKLHYLRSAMKGEASRLISSFAIT
FT                 SDNYTLAWKTICDRYENKNFLVKQHMSAILKISHVKRESSSALAELADEFN
FT                 RHVAILDKLEAPEVHWNSFLVERLSSLLDEKSLMDWEAQCNDNVVPQYQDL
FT                 LNFVLKRSRTLQMCKPXQGSHPTNVQKPTRAKLSSHVASENIVKCPSCKQA
FT                 HSISQCESFLKLTPNNRLDFVKKNQLCINCLRGGHLAKDCRSSLCKTCAKR
FT                 HHSLLHLPPIVSASSSMDERPANTTSCTAVCSADGTITQXKSSFSVSVAPS
FT                 VVPSRTPPKANSSSPQTFAVGSPSLSSSVYSNYRSEQNEPLPHCSYESSMS
FT                 FTPTNKSRESTVFLSTALVRVQDADGIGHFARALLDSGSQSNFVSESMCQK
FT                 LGLKRSRINLPVSGIGQATVSVRYCVQISLASRFGSFVQDIDCLVLPKLTV
FT                 NLPSRHVDISKWNIPRHVPLADPKFNISHGIDMIVGAELFFSLIESHQIIL
FT                 ADNYPVLQKTVLGYVICGKYSANTTGPVTCHVVTEQDLNTQLEKMWEVENL
FT                 DVGKALTQTEQDVENHFLQTVSRDATGRYIVRLPFRESMSSLLDDSYDQAV
FT                 KRFLLAEKRFARDKKLREEYTKFMDDYERLGHMEVGSRVAGPQYFLPHHAV
FT                 HRPESSTTKTRIVFDASSKGSGALSLNDTLHTGPTVQPPLLTHILNFRLPR
FT                 YVFTADAEKMFRQIWVHPDDRRYLKIIWRPDPSLPLQIYQLKTVTYGLACS
FT                 PYHAARVLMKLAEEDGHKYPLAAAVVTKRIYVDDALAGSDCLNEATETCRQ
FT                 LRELLHLGGFSLRKWSSNDTRILKYIPTELWENASKMEICRSTVTALGLLW
FT                 NPTGDFFEFKIPSFPELAKVTKRIVVSETAQLFDPLGLLGSIVISARIFVQ
FT                 RLWAKNISWDEELSTEESAWWMNFRSEMKVLQQLAVPRRVLSNSDRNYQLH
FT                 CFCDASERGYGCCVYVVSQNTEGQTISQLLITKSRVAPLRGLSIPRLELCA
FT                 AVLGSQLVDKLRNGTDFTGSVTFWTDSTVVLYWLRAPPADWKVFVSNRIAE
FT                 VQRLSKGFQWRHVPTEHNPADKISRGIRPNQIMDDELWWHGPQYLSQPVSY
FT                 WPETLPNSTPLPMTEMELERRQIVALNCVEIDDSIFSKFSELGKLLKVVAW
FT                 CLRFSTNIRKRADERIIGKLTPIDIEKALKSVIHLAQAAVFSNEIHQLTLS
FT                 KMNANQNIAIDSKSPLKNLNVFLDDNGLIRLNSRLSNLEGPYDTKFPLVIP
FT                 AKHRLSWLIARSLHLRTAHAGPSLLLSTMRQRYWPIQGRQLVRRIVRNCVT
FT                 CFRCSPASTNQQMAPLPSVRITPARVFSKSGLDYCGPFNVRPLYGRGASVK
FT                 MYIAVFVCLSVKAVHVEIVSDLSSGACINAVKRFVARRGRLIELRCDNATA
FT                 FVGADREMRELRRRYMQQFQTDEWDSYCLDSGISFKFIPARSPHFGGLWEA
FT                 GVKSFKRHFRRIFGNSSYTIDELTTAATHIESILNSRPLTPLTDHPGDLSV
FT                 LTPGHFIIGEPMFSLPEPDVTNVTVSRLSRFQEMRRAVQNFWKCWSRDYLT
FT                 LLHQRSKWRKATKNIDPGTIVLVKQDNYPPFTWPLGRIMETFVGPDGLVRV
FT                 VLVRTGRGLYKRAITEVSPLPIEEEDVGGDMQAADRDHQGRLNHAGSTGPG
FT                 "
XX
SQ   Sequence 5764 BP; 1550 A; 1379 C; 1324 G; 1508 T; 3 other;
     gtaaatggtg ccgaaacccg ggaggaattc ccaaccgtag aaggagcata ccagtcggac        60
     aaggagcaac ctacaccttg gataatagag cacatctcgt cattgtcact gtcgctggcc       120
     gcagaactgc gccaatttct tcgtcgcacg tgccctacaa tctccagtaa aaggaaggac       180
     tccagaaggt tcgcgtgctc caacaggtgc tccagaagtt gaggttacga taaccacgtg       240
     ggaaccgtaa gtgaagtcat caaacaggtg ggtgcttcta gaccacgttc tgggaaaatg       300
     agttttaaaa aggcaggttt gcggaaaaat gttatgcatc tcaaagttct tcgtcgtaaa       360
     cgagataaca tagttgggtc ggctaaatta atccagcaat tcaatgagca gtatgacgat       420
     agcaaaatcg atcaagttgc tataagaatt gagcgtttag atgggctttg ggataaattt       480
     gaggacacgg aggatgaaat tgaagcatta gaggaccatg aggaagggtt ttcggaaact       540
     cgacaggaat tccaaaacct gtacttcgat ctcaaggcgt cactggttag taaactcccc       600
     agggcagtaa ctactaattc tccttcccct ggtcctagct cctcacggca ctctgtacca       660
     cctgctaacc aacccatgtc ggttaagcta cctgaaataa aaattccgga atttggaggt       720
     agaccagatg agtggatcga atttcgtgat ctgttcaaat cgttagtgca cactaatccc       780
     caaattcccg cggttcagaa gcttcactac ttacgtagcg ccatgaaagg cgaggcctct       840
     cgtttgatct cgtcattcgc tatcacttcg gataattaca ctctcgcttg gaaaacgatc       900
     tgtgatcggt atgaaaacaa aaatttctta gtaaagcaac acatgtccgc aattctgaaa       960
     atttcccatg ttaagagaga atcatcatct gctctcgcag aattagccga tgaatttaac      1020
     cgacatgtgg ccattcttga taaacttgaa gcaccagaag tccattggaa ttcgttccta      1080
     gtagagcgcc ttagtagcct tttggatgag aaatcgttaa tggattggga agcccagtgc      1140
     aacgataatg ttgtaccaca ataccaagat ctgctgaact ttgttctaaa acgatcacgc      1200
     acactgcaaa tgtgcaaacc aktacaaggt tcgcatccaa cgaatgtcca aaagcccacc      1260
     cgwgcgaaac tatcctctca tgtcgcctct gaaaacatcg tcaaatgccc tagctgtaaa      1320
     caggctcact ctatttcgca gtgtgagtcg ttcttgaaat tgacgcccaa caatcggctg      1380
     gattttgtca aaaagaatca actttgtatt aactgcctca gaggaggaca tttagctaaa      1440
     gattgtcgga gcagcctttg caaaacatgt gcaaagagac accacagctt acttcacctc      1500
     cccccaattg tgtctgcttc cagttcgatg gatgaaaggc cagcgaatac tacgtcttgc      1560
     acggcagttt gctctgccga tggaaccatc actcaagmaa aatcctcgtt ctcggtatcg      1620
     gtagcaccat cggtggtgcc ttcgcgtact ccaccgaagg caaattcgtc gtcgccgcaa      1680
     acgttcgccg tcggtagccc ctctctttcg tcgtcggtat actcgaatta tcgttccgaa      1740
     caaaatgaac cacttcccca ttgctcttat gaaagctcca tgtcgttcac accaacaaat      1800
     aaatcccgag aaagcacagt gttcttatct acagcattgg tacgagtaca agatgctgac      1860
     ggtattggtc actttgcaag agctttactc gatagcggat cacagtcaaa cttcgtatcc      1920
     gagtccatgt gccagaagct aggcttgaaa cgcagtcgta taaatctgcc cgtgagtggc      1980
     attggccagg cgactgtgag tgtacgctat tgtgtacaaa tctccctcgc atcacgtttt      2040
     ggaagcttcg tacaagacat tgactgccta gttcttccaa aattgactgt gaatctccca      2100
     agtcgccatg tagatatctc aaaatggaac attccacgcc acgttccact tgcagatcca      2160
     aaattcaata tcagtcatgg catcgacatg attgtgggtg cagaactatt tttctcgcta      2220
     attgaatcgc atcaaataat tctggccgac aattaccctg ttttacaaaa aacggtactt      2280
     ggttacgtaa tttgtgggaa atattcagcc aacaccactg gaccagtaac atgccacgta      2340
     gttactgaac aggatttgaa cactcaatta gagaaaatgt gggaggtcga aaatcttgac      2400
     gttggaaagg cactcacgca gacagaacaa gacgtcgaaa atcactttct tcaaactgtt      2460
     tcacgtgatg ccactggccg ctacattgtt cgccttcctt ttcgtgagtc catgagttcg      2520
     ttgctggatg actcttacga ccaggctgtg aaacgatttt tgcttgctga gaaacgattt      2580
     gctcgagaca agaagctgcg tgaggagtac acgaaattca tggacgacta tgaacgatta      2640
     gggcatatgg aagtcggttc tcgtgtcgcg ggtccgcagt atttcctccc ccatcacgct      2700
     gtacatcggc ctgaaagtag cactacgaaa actcgcattg tttttgatgc cagcagcaag      2760
     ggctcgggcg ctctctcgct taacgacacc cttcacactg ggccaacagt gcaaccacct      2820
     ttgctgactc atattttgaa ttttcggctg cctcgatacg ttttcaccgc ggacgcggag      2880
     aaaatgttcc gccagatatg ggtccacccc gatgaccggc ggtatttgaa gataatctgg      2940
     cgtccggacc catctttgcc attgcaaatt tatcagctaa aaacggtgac ctatgggctt      3000
     gcctgttcac cttaccatgc agctcgtgtg cttatgaaac tcgctgagga agatgggcat      3060
     aaatatccac tagcggctgc tgttgttact aaacgtatat acgtcgacga cgctttagct      3120
     ggaagtgatt gtcttaatga agctacagaa acatgtcgtc agctccgtga gttactgcat      3180
     ctcggagggt tttcgttacg gaaatggagc agcaacgata cacgaatttt gaaatacatt      3240
     cctaccgagt tgtgggaaaa tgcctcgaaa atggaaattt gtcgttcaac ggtgactgct      3300
     ttgggtcttc tttggaatcc aacaggcgac ttctttgaat ttaagattcc ttcctttccg      3360
     gaattggcca aagttactaa gcgcattgta gtctctgaaa cagctcaact gtttgaccca      3420
     ttaggactgc tcggttcgat tgtcatcagc gctagaattt tcgttcaacg gctttgggca      3480
     aaaaatatat catgggacga agagctttcg accgaagaga gtgcctggtg gatgaatttt      3540
     cgaagtgaga tgaaagtatt gcagcaacta gccgttcctc gtagagttct ctcaaactca      3600
     gatagaaatt atcagctcca ttgcttttgt gacgcctctg agagaggata cggctgttgt      3660
     gtttatgtgg ttagccaaaa tacagaaggt caaacaataa gccagctttt gattacaaag      3720
     tctcgcgtcg ccccattacg cgggttgtcg atcccacgac tcgagttatg cgcagcggta      3780
     ctaggcagtc aattagtgga caaattacgt aacgggacag attttaccgg atccgtcaca      3840
     ttctggacag attctaccgt ggtattatac tggcttcgag ctccaccagc tgattggaaa      3900
     gtatttgtat ccaatcgaat tgccgaggta caaaggctct caaagggatt ccaatggaga      3960
     catgttccca cagaacacaa cccagctgac aaaatttctc gtgggattcg tcctaatcaa      4020
     ataatggacg acgaactttg gtggcatggg ccgcaatatc tctcacagcc ggtatcttat      4080
     tggcctgaaa cattaccgaa ctctacacca ttgccaatga ctgagatgga gcttgaaaga      4140
     cgacaaatcg ttgctctaaa ctgtgtggaa atcgacgatt ctatattttc caagttttct      4200
     gaattgggga agcttttgaa ggtcgtcgct tggtgtttgc ggttttccac caatattcga      4260
     aaaagagcgg acgagcgtat cattggtaag ctaacaccaa ttgatataga gaaggcttta      4320
     aaatcggtta tccacctggc acaagcagct gttttctcaa atgaaatcca tcaattaacc      4380
     ctcagcaaaa tgaacgcaaa tcagaatatc gccatcgatt caaagtcgcc tcttaaaaac      4440
     ctcaatgttt tcctcgacga taatggatta attcgtctga acagccggtt aagcaacttg      4500
     gaaggcccat atgacacgaa atttcctctt gttattccag cgaagcatcg tttgagttgg      4560
     ttgattgctc ggtctttgca tctacgtact gcacacgctg gtccatctct attgctctcg      4620
     acgatgcgac aacgttattg gccaatacaa ggaaggcaac tggttcgtcg aattgttcgc      4680
     aactgtgtga cctgttttcg ctgttcgcct gcaagcacaa accaacaaat ggcaccactg      4740
     ccatcagtac gaataacacc tgctcgtgtg ttctccaaat cggggttgga ttactgtgga      4800
     ccattcaacg tccgtccgct gtatgggagg ggggctagcg tcaaaatgta cattgccgta      4860
     ttcgtgtgcc tgtcggtgaa ggccgttcac gtcgaaatcg tctccgactt gtcgtccggt      4920
     gcgtgtatca acgccgtaaa acggttcgtt gctcgacgcg gtcggttaat cgagctccgg      4980
     tgcgataacg ctacagcttt cgtcggagct gatcgtgaga tgcgtgaact tcgtcgtcgg      5040
     tatatgcagc agtttcagac agatgaatgg gatagctact gtctcgactc agggatctcg      5100
     ttcaagttca tccctgcccg atctccgcac ttcggggggt tgtgggaggc cggagtgaaa      5160
     tcgtttaaac gccactttcg acgaatcttc ggtaactcat cgtatacgat tgacgaacta      5220
     acaacagcag ctacacacat tgaaagcatc ctgaactctc ggcctctcac ccctctcacg      5280
     gatcatcctg gcgacctctc cgttctgaca cctgggcatt ttattatcgg ggagccaatg      5340
     ttttcgttac ctgagcccga tgtaacaaac gttactgtat ccagattgtc tcgttttcag      5400
     gaaatgcgtc gtgcggtcca aaatttttgg aaatgttggt cacgagatta tttaactctt      5460
     ctgcatcaac gctcgaagtg gaggaaggcg accaagaaca tcgaccctgg aaccatcgtc      5520
     ttggtcaaac aagacaacta tccaccattc acatggcccc tgggacgaat catggagacc      5580
     tttgtcggac cggatggatt agtacgtgta gtcctcgtac gtactggtcg tggtctctac      5640
     aagcgagcaa ttactgaggt cagtccatta ccaatcgagg aggaagatgt cggcggtgac      5700
     atgcaagccg ctgatcgaga tcaccaagga aggttgaacc atgccggttc aacggggccc      5760
     ggga                                                                   5764
//
ID   BEL-717_AA-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-717_AA-I;
KW   BEL-717_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-392
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-392
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 363-363 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 392 BP; 122 A; 85 C; 67 G; 118 T; 0 other;
     tgttatgagt acttaaagaa ttacaaatat caaatgacca gtttcaacta tcattttaaa        60
     ttgcattgaa tataatttcg aacattcact caaataaatt tccgtaacgc tagatatgag       120
     ttccagagag ttgcgtttca tgatttcctc tcaatttcca agactaccac atccatactc       180
     agtacatgaa ttgagcaaat tgtaaaacac tacttcagta tgaatatagc agttaaaccg       240
     atcacacgca tcgaatgtct tctctatccg aagtggttta ccagtccgcc gcgaatcaat       300
     ccagtcgacc aagtccgcaa gtcatcggtc gtgacatcgt ttaaagttct ggtgcgccgt       360
     cgtaagtata gttcgcgagt tttgcgtgaa ca                                     392
//
ID   BEL-718_AA-I repbase;    DNA;    INV; 6283 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-718_;
KW   BEL-718_AA-I; BEL-718_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6283
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6283
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 425-425 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..6281
FT                 /product="BEL-718_AA-I_1p"
FT                 /translation="MSEKSTHCVANPTGVPGNTDNITGAATATNASNVPSV
FT                 VILPPPSVGEQVNFEVVPTRVRPIIASTVNVGQMMRGTESTVRRNPLREVR
FT                 RNVDHRCRLCEKRDNEEMVQCDGCDRWFHFACVHVTEDIANISWVCPICKS
FT                 SSLIAPPTSNNNLFNEQQRQNLPPSKPVSHRSSSKASSRSEARRLKELEMK
FT                 KLEEEYELEKRFLERKYKLLKELGSETSSITEEDEEEKLSKIEEWLAETER
FT                 NGEAEDSGVAAEAANEQTPNHSDKLKEHQAQNVQHSAYPPVLRPNPCDLRQ
FT                 QQNQSSCPTSVPISVQHNRLSQGVHYFNSTRPQFDHEQVQTNRFQTGTHPE
FT                 HSAYMQTYDQPRFMSSTLPRTCMNQRSREIQEDQQSKVFRNMASVPAMNPG
FT                 RLNEFIPGQRSTPIRSAQPESCPVAFNEETVCILNRSQIAARQAVSRDLPD
FT                 FDGSLEEWPLFYATFHSSTQMCGYTNEENMLRLRKCLKGKALEAVKCELLH
FT                 PSNVADVLSTLKMLYGRPDAIVQSIIKRIRQLPPPSTERLETIVNFALTVK
FT                 NMVAMIRACDVNDFIFNASLRCELVDRLPAPLKLDWARFTRNSPNPNLADF
FT                 STWLYTIAEDASTVMATPGHESRGKIVKKDGFLNFHSESESNGDTTNELPC
FT                 KIRSVTPDNTANNQCVVCKGNCLTVARCNRFEEFSYDSKWAVIKECKLCRK
FT                 CLRKHNSSCKQQKPCGVNGCTFLHHPLLHKPENLNPNPSTVKQTETRTESN
FT                 GAALSCNVHQGQSAVLFRIVPVILYGPEKVVRTYAFIDDGSELTLIEQSLA
FT                 DELGIEGPKKSLCLKWTGGTRKIESDSRQVNLQISGVSKEATKFELQAINT
FT                 LSSLQIRPQTLMLEELQKRYPHLVGLPLESYRDVSPRLLIGLNYANLGHGN
FT                 KSREGKLNEPIAVKTRLGWMVYGNCTGREESAGYMNYHSVQVCECNREYDD
FT                 SLQRAMKSYFALDSMGIAKPNKLILSQEDQRAQMLLESFTRPTNRRYESGL
FT                 LWKYDQVRLPNSEAMARRRWICLENRMNKNPTMAEALKQKIQEHISKGYIR
FT                 KLSEAEIRAPHERIWYLPIFVVTNPNKPGKLRLVWDAAATAHGVSLNSFLL
FT                 KGPDQLTSLLSVLIRFREFRVAVCGDIKEMFHQVQMRDVDQQCQRFFWRDD
FT                 GNTEPSVYVVQVMTFGACCSPSIAQHVKNSNAKQFEQDHPEAVDAIVKRHY
FT                 VDDMLVSTETEEEAIRLARDVKNIHMNAGFDIRNWISNSSTVQAALNEVAA
FT                 VEKNMDISETPATEKVLGMWWNTSTDRFTYKVSIRYDEDLLSGNRRPTKRQ
FT                 VLRTLMMVFDPMGFIAHILMFLKVLLQEIWRTPVGWDDPIEDAQFDKWLTW
FT                 LTIFPKIESVEVARCYRLSTSMSASVEMHTFVDASESGFAAVVYLRFKEGS
FT                 VIECALAGAKTRVAPLKFLSIPRSELQAALLGVRLADTIVKSLSINIDQRY
FT                 FWTDSKDVLCWIRSDHRRYSQFVAFRVSEMLESTEMSEWRWVPTKQNVADE
FT                 GTKWARVPELSTNSRWFRGPNFLWQGEQAWPAFPTFGKSTNEELRPHLLTH
FT                 EKATEPVISLQDFSNWIPLLRRTAYTFRYVHNLRRSIEKQQRISGPLTQSE
FT                 LAKAENYLFRLAQSETYADEIASLTVSHPRTSQTKRIIRNNPLFRNAFIDE
FT                 NGIARVQGRTKACEFINRDAVEPIILPRNHHITRLIITDVHERLNHQNHAT
FT                 IVNELLQRYRIPRIKATYQAVRRACQYCKNQLAKPQPPVMADLPQSRLAAF
FT                 SRPFTYMGVDYFGPILVSVGRRTEKRWGVLATCLTTRAIHLQIVHTLTTSS
FT                 CVMAIRNVMARRGTPAVIYSDRGTNFQATSKELKAAIQHLDHDKLAKEFTS
FT                 SRTQWTFIPPLTPHMGGAWERLIRTVKQNLVAMQHSRLPTDEVLHNAIVEV
FT                 ENIVNSRPLTDIPLDNDNSPVLTPNHFLLGSANGLRSWVPFDDNPIVLRNC
FT                 YTQSQTMANVFWKRWIRDYLPILTRRSKWFIPVKPIDVGDIVMVVDNKLPR
FT                 NCWLKARVIATCRASDGQVRSATVQTASGGIYERSAVSLAVLDVGVERNTH
FT                 LDEPSRITGG"
XX
SQ   Sequence 6283 BP; 1846 A; 1458 C; 1503 G; 1476 T; 0 other;
     ttttataaaa ttcttttacc atgtcggaga agtcgacgca ttgtgtagca aatcccactg        60
     gagtaccagg aaacaccgac aacatcaccg gagcggccac agcaacgaac gcaagtaatg       120
     tcccctccgt tgtcatactg ccacctccta gcgttggaga acaggtaaat ttcgaagttg       180
     tcccgactcg agtccgcccg atcatagcga gcaccgtcaa tgttggtcag atgatgcgcg       240
     gaactgagag taccgttcgt agaaatccgt tacgtgaagt tcgtagaaac gtagatcatc       300
     ggtgcagatt gtgtgagaag cgtgacaatg aagaaatggt gcagtgtgat ggatgtgata       360
     gatggttcca ctttgcttgt gtacacgtca cggaagatat cgccaatatc agctgggtct       420
     gtccgatttg taagagttca tctcttattg ctcctcccac tagtaacaat aacttattca       480
     acgagcagca aaggcaaaat ctacccccaa gcaagcccgt atcgcatcga tcgagtagca       540
     aggcaagctc gcgaagtgaa gcgagaagat tgaaggagtt ggagatgaag aagcttgaag       600
     aagaatacga attggagaaa cgctttctcg agcgtaagta caaactgttg aaggagttag       660
     gaagcgaaac ttcctcgatt actgaggagg acgaggagga aaaactgtcg aagatcgagg       720
     agtggttagc cgaaacggaa cgaaacggtg aggcggagga ttccggagta gcagcagaag       780
     cggcaaacga gcagacaccg aaccattcgg acaagctcaa agagcaccaa gctcaaaatg       840
     tccaacatag tgcgtaccca ccagttcttc gcccaaaccc atgtgatcta cgtcagcaac       900
     agaatcaatc gtcctgccct acatcagtgc caatcagcgt acagcacaat cgcctttcgc       960
     aaggtgttca ctatttcaac agcacaaggc cgcaatttga ccacgaacaa gttcaaacta      1020
     atcgtttcca aactggaact catccagaac actctgctta tatgcagacc tacgatcaac      1080
     ccaggtttat gtcctccacg ctaccacgta cgtgtatgaa ccaacgttcg agggagatcc      1140
     aagaagatca acagtcaaaa gtattcagaa acatggcgtc cgttcccgca atgaatccag      1200
     gtagactcaa cgagtttatc ccaggacaac gttcaacgcc gatacgttca gctcagccag      1260
     aatcatgtcc agtagcattc aacgaagaaa ccgtttgcat cttgaatcgt agccagattg      1320
     cggcacgtca agcggtgtca agagatctgc cagactttga cgggtcattg gaagaatggc      1380
     cactatttta cgcaacattc cattcgtcta cacagatgtg tggatataca aacgaagaga      1440
     acatgctgcg gctgcggaaa tgcctgaaag ggaaagcact ggaggcggtt aagtgtgagt      1500
     tgcttcatcc ttcaaacgta gccgatgtac tgtcgacatt gaaaatgctg tacgggcgac      1560
     cagacgcaat agtgcaatcg atcatcaagc gaatccgaca gctacctcca ccaagtacgg      1620
     agaggcttga gactattgtg aactttgcct taaccgtgaa gaacatggtg gcgatgatac      1680
     gtgcttgtga cgtgaacgat tttatcttca atgcttctct tcgttgtgag ttagtggacc      1740
     gtctgccagc acccctgaag ttagattggg cgaggttcac ccgtaattca cccaatccga      1800
     acttagcgga cttcagtact tggctgtaca cgatagctga ggacgcaagc accgtaatgg      1860
     caacgcccgg acatgaaagt cgcggtaaaa ttgtaaaaaa agatggattt ctaaattttc      1920
     attcagagtc tgaatcgaac ggtgatacaa ctaacgagtt gccatgcaaa ataaggtcgg      1980
     taacaccgga taacactgcc aataatcaat gcgtggtgtg taaaggaaat tgtttaaccg      2040
     tagccagatg taacagattc gaagaattta gctacgattc gaagtgggcc gtcattaaag      2100
     aatgtaagct ttgtcgcaag tgtcttcgaa agcacaacag ttcttgtaag caacagaaac      2160
     catgcggagt gaatggatgc acgttcctac accatccttt gctacacaaa ccggagaatc      2220
     tgaaccccaa tccttcaacg gtgaaacaaa ccgaaacccg gacggagtcc aatggagcgg      2280
     cactaagctg caacgtccac caaggtcagt ctgcagtact cttccgcata gttccagtca      2340
     tattgtatgg acctgaaaaa gtagtgcgga cgtatgcgtt catcgacgac ggatcagaac      2400
     tcacgcttat cgaacaaagc cttgctgatg aactaggtat tgaaggtccg aaaaaatcct      2460
     tgtgtttgaa gtggaccggt gggacccgta aaatagaaag tgattcacgg caagttaatc      2520
     tacagatttc tggagtaagc aaggaggcaa ctaagttcga acttcaggcc atcaacacat      2580
     tgtcgtctct ccagatccgt ccgcagacgc ttatgctcga agagttgcag aaaaggtatc      2640
     cccatctggt tggactacca cttgaatcgt atcgtgatgt gagtccgcga cttttgattg      2700
     gtttgaacta tgcaaatctt ggtcatggaa ataagagtcg agaaggaaaa ttaaacgagc      2760
     caatcgcagt gaaaacccgc ttaggatgga tggtttatgg aaactgtacc ggtagagaag      2820
     aatctgcggg atacatgaac taccacagtg tacaagtatg cgaatgcaat cgagaatatg      2880
     atgacagcct tcaaagggcg atgaaatcgt actttgcgct agatagtatg ggaatcgcca      2940
     aaccgaataa gctcattcta tcgcaagaag atcaaagagc tcaaatgttg ctggaatctt      3000
     tcactcgtcc tacaaaccgt cgctatgaat ctggtcttct ctggaaatac gaccaggttc      3060
     gtctccctaa cagtgaggca atggctcgta gacggtggat atgtctggaa aaccgaatga      3120
     acaagaaccc aacgatggcc gaagcactca agcagaaaat ccaagagcac ataagcaagg      3180
     ggtatattag aaagctatct gaggcagaaa ttcgtgcgcc acatgaacgt atctggtatc      3240
     ttcccatctt cgtagtcacg aatccaaata aacctggcaa gcttcgtttg gtatgggatg      3300
     cagcagctac cgcacatgga gtttcgttga attcatttct cctgaaagga ccggatcagt      3360
     tgacctcact tctgtctgta ttaattcgct tccgagaatt ccgggtggca gtatgtggtg      3420
     acattaaaga aatgtttcac caagtgcaaa tgcgagatgt cgaccaacaa tgtcaacgtt      3480
     tcttttggag agacgatgga aataccgagc ctagcgtgta tgtcgttcag gtaatgacat      3540
     ttggggcttg ttgttcccca agcatcgcac aacatgtgaa gaatagcaac gcgaagcagt      3600
     tcgaacagga tcacccagaa gcagttgatg ccatagtcaa gcgacactac gtcgatgata      3660
     tgctcgttag tacggagacg gaagaagagg ccataagatt ggcacgagat gtgaagaaca      3720
     ttcacatgaa tgcaggattc gatatacgaa attggatctc aaattcgagc acggttcaag      3780
     cagctcttaa tgaggtagca gccgtggaaa agaacatgga catcagtgag acacccgcca      3840
     cagaaaaagt gttagggatg tggtggaata cctcaacgga tcgcttcaca tacaaggtgt      3900
     cgattcgata cgacgaagat ttgctctccg gcaaccgccg accaaccaag cggcaggttc      3960
     ttcggacgct tatgatggtt ttcgatccta tggggttcat cgcacacatt ctgatgtttt      4020
     tgaaagtcct tctgcaagaa atttggagaa cgccagtcgg atgggacgat cccatagaag      4080
     atgcgcagtt cgataaatgg ctaacatggt tgactatctt cccgaaaatc gagtctgttg      4140
     aagttgcgcg atgttatcgt ctatcgacgt caatgagcgc ttcagttgaa atgcatacgt      4200
     tcgttgatgc aagtgaaagt ggattcgccg cagttgtcta tctccgtttc aaagaaggca      4260
     gtgtgataga atgcgcatta gcgggagcaa aaactagagt agctccatta aagtttctat      4320
     ctattccacg gtcagagcta caggccgcgc tactaggtgt tcgtttggct gacacaatag      4380
     taaaatctct ttccatcaac atagatcaac gttatttctg gacagactcc aaagatgttc      4440
     tttgctggat aagatccgac catcgtcgtt atagccaatt tgtggccttt cgagtaagcg      4500
     agatgttaga gtcaacagaa atgagcgaat ggcggtgggt tcctacgaaa cagaacgttg      4560
     ccgatgaagg aactaaatgg gcacgagttc ctgaactgtc caccaacagc cggtggttcc      4620
     gtggaccgaa ttttctctgg caaggcgaac aagcctggcc tgcatttccg acctttggga      4680
     aatcgacgaa cgaggaactc cgaccacacc tgcttacaca cgaaaaagcc acggagccgg      4740
     tgattagtct acaagatttc tctaattgga ttcctctgct ccgccggact gcatacacct      4800
     ttcgatatgt acacaacttg aggcgttcta tcgaaaagca acaacgcatc agtggaccac      4860
     tcacgcaatc ggaacttgct aaggcagaaa attacttgtt tcgtttagcg caatctgaaa      4920
     cttatgctga tgaaatcgcc tccttaactg taagtcatcc caggacgagc caaacgaaac      4980
     gaatcattag aaacaatccg ctatttcgta acgctttcat cgacgagaac ggaattgcac      5040
     gagtccaagg acgaactaag gcgtgcgaat ttatcaatcg tgacgccgtt gaacctatca      5100
     tactcccacg taatcaccac attacacgat tgattattac ggatgttcac gagagactca      5160
     atcatcaaaa ccacgcgaca atcgtcaatg agcttctaca acgctaccgt attcctcgga      5220
     taaaagcgac atatcaggct gtccgacgag cctgtcaata ttgcaagaat caactagcaa      5280
     aaccacaacc accagtgatg gctgatcttc ctcagtcacg acttgctgca tttagtcgcc      5340
     cattcaccta catgggggtt gattattttg gacccatact ggtctctgtt ggacgtcgaa      5400
     ccgaaaaacg atggggggtc cttgccacat gcctaaccac tcgcgccatt cacttacaaa      5460
     tcgttcacac actgacaacc agctcttgtg ttatggcaat ccgtaatgtg atggctagga      5520
     gaggaacgcc tgctgttata tatagcgacc gtggtaccaa ttttcaagcg accagcaagg      5580
     aactgaaggc agcgatacaa catctcgatc atgataaact ggcaaaagag tttacatcta      5640
     gtcgaacaca gtggactttt atcccacctc taacgccaca tatgggcggc gcatgggaac      5700
     ggctgatacg gactgttaaa cagaacctag tagcaatgca acacagccga ttaccaaccg      5760
     atgaggtact acataatgcg atcgtggagg tcgaaaatat cgttaattct cgtccattga      5820
     ccgacattcc gctcgataac gacaactctc ctgttttgac ccctaaccac tttttgttgg      5880
     gttcagcgaa tggtctaaga tcctgggttc catttgacga taatcctata gtgctgagga      5940
     actgctacac ccaatctcaa actatggcaa acgtattttg gaaacggtgg atacgggatt      6000
     accttcctat tcttacgcga agatcgaagt ggttcatacc ggtgaaacca atcgacgtgg      6060
     gagacattgt aatggtcgtt gataacaagc tgccacgcaa ctgctggctg aaggccagag      6120
     tgatcgctac atgcagagct tccgatggac aagtacgctc cgctacggtt caaactgcgt      6180
     ctgggggaat ctacgagcgt tccgctgtat cgctagctgt cctcgacgta ggcgttgaga      6240
     ggaatacgca tttggacgag ccttcgcgca ttacgggggg gag                        6283
//
ID   BEL-718_AA-LTR repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-718_AA-I;
KW   BEL-718_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-723
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-723
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 364-364 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 723 BP; 243 A; 120 C; 148 G; 212 T; 0 other;
     tgttggtagc gccccgtcga tgaagagtga gtcgatatcc ccacatgact caattttgac        60
     atgtaccaca cccgatgcca tcgaggggat tgcagaaacg tgaataataa taagaaacaa       120
     aaataaaacc atcattccac caaatagcaa caagtttaca tgaaagttta agtaatagga       180
     gttgaattac gtgccctaaa ttaattattt tacaattata atagccaata tcagttagaa       240
     ttatctacct gcagtgcaat actggttcag agtgctctaa agcaccggtt tagtgtttag       300
     cgtgaatttg tattgaacta ggtgcgatat atggcagtat gtttggaaga aatcataagc       360
     ttatatttgc tctttatatc tatgattagg tgaaaaacag ggaaatctgg tcggtaagca       420
     ttccgtagtt gtcgaaaacg ttatccgagc aagtgcgact cagaggtaag cacgaagaaa       480
     acaatagttt aagaattaat actagaacac tatcaatata tgcaacaggg gttcacaatc       540
     gtcgcgaaaa ggagcattgt tgcgaaggaa tattccgagg ctagatcgct aaaagtaagt       600
     cgagctatgt gtgaatatgt ctagataatg attgccttgt tttttgtagg aattttataa       660
     tttatcaatt acgccgaata aatttattga atttgaatct agttcctcgc tgctctcgca       720
     aca                                                                     723
//
ID   BEL-719_AA-I repbase;    DNA;    INV; 6064 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-719_;
KW   BEL-719_AA-I; BEL-719_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6064
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6064
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           563..6061
FT                 /product="BEL-719_AA-I_1p"
FT                 /translation="MFLRSNAKKKLLFPYVSGSSPSAEQFSTPTSTIREQL
FT                 AEQEAKKKSDKMAETVEALSQCCETTRAKVERICRAVQAAAGDHRKFSIHA
FT                 LRLYAKNVDSAYAEFNDFQNRIYLAVPARKGEFEPKFIDFEELYEYTRIAI
FT                 SEMLQAYEDEEKALMVAANNKPKASGSSDPGGSGLGHTSVMFPPTLVLQQT
FT                 ALPTFDGRYENWFKFKQMFRDVADKCTVDSAATKLHYLDKALIGKAHGAID
FT                 QQIIRDNDYEGAWNSLTEQFENLPALIADTTARLLNLKALNNESFSSLKSL
FT                 IDDVEKCVSSLEYHGLQMDKMSEAIVISLTASKLDSSTRKVWESSVKRGKL
FT                 PVYKDMMAVLKNQLAILERCEKARPQTKSKGSNFTVKHPSTVNPSKAHTAT
FT                 VGKSDDGCALCRADHLVDQCDSFKSLNANARYGKARQHGLCFLCLKRGHRT
FT                 SDCKTTKKCTVCARNHHLLLHPEGKNEQQKSSSVVETTLIEKPSDKPAVKD
FT                 VTPSTNCQVSCNNNEVHQQVLLATAVVYVIDGSGQRHLCRALLDSGAMASF
FT                 MSQSLADLLNLAKETADVPVVGVSGMRTVVKFKVRAKVESRSTDYSFCLDC
FT                 LIVPRVTGTLPTNPVEVDRWPIPPNLNLADSRFHEPNRIDLLIGAEMFFEL
FT                 LLQGKIKMADELPILQESVFGWLVSGRVIEAASTTVQVCHAATDEPSDKEL
FT                 VNVLKRFWSVDDQNQEVMDRIENDDCERYFVETYRRDSNGRFIVRLPFRTN
FT                 VVDLGETREQAEKRLRCLQRRLDKNVELKENYETFIEEYVALGHARFVEGT
FT                 SNTDSYAYYLPHHCILKPESSTTKIRVVFDASAKSSTNLSLNDVMMIGPTV
FT                 QPQLFDIMLRFRFVKYALTADVSKMYRQVKVHGDDCRYQRILWYNAEGHPI
FT                 VIELTTVTYGTSAAPFLATRCLNQLALDEQRSFPDASDRVLKCFYVDDALT
FT                 GANNLQEARQLQRDLIDLLAKGGFVLHKWCANDAALLEEIPEERREMQVDF
FT                 ESHDVNGVIKTLGLLWNPIEDEFVFRVKPPEKPRNVLTKRQILSEISRLFD
FT                 PLGLLGPAMMIAKLVMQELWRQGFNWDDVVSGEVLNMWRRFSEELCELSDL
FT                 SVPRRVTIDSAVSYEIMGFADASTKAYGCNVYLRGVKADGTAEMRLLCGKS
FT                 RVAPLKEEKRKARNDNEPGELTIPRLELCAAKLLTEQAKKVIEAIEVKIER
FT                 VVLWSDSKIVLRWIEFLKADAPVFVRNRVASIRQMTNDCGYEWKYVSSEMN
FT                 PADLISRGVYPGSMKTCELWWHGPPFLQTAMFEECSWNDAREPADTEEPLV
FT                 NDEVVTTVTVLDNRPMETIMNHSDFRKLQRIFAYVTRFIGNCRKQKADRRS
FT                 GGLQIGDYRDSMLTLVRIVQTSTYGAEIDRLLKGESIKSKLRNFQPVFDGD
FT                 ERLLRVGGRIRKSDLPRDQRHPLILPEKHHLTEIIITALHREHLHVGQNGL
FT                 LSIVRQQFWPVNAKRTINRVVRKCVRCFRVNPKNVDLFMGDLPSFRVTASH
FT                 PFMRTGVDYAGPVLLKQGRMKAPIKAYIALFVCMSTKAVHIELVSSLSTDS
FT                 FLAALHRFVGRRGNVAEIFSDNGKNFIGANRQLKELHALMKSDVMKQRIDN
FT                 FCQAKGISWSFNPPKAPHQGGLWEAGVKSAKFHLHRILKEAYLTYEEMSTL
FT                 LVQIEAILNSRPLCQQSVDPKDYEALSPAHFLVGRELTAVAEPFYDQLKEN
FT                 TLSRYQFVQSRKQAFWRRWSNEYVTELQRRGKWFKNPTLIRNGQLVVLKED
FT                 NTPPQTWPLGRVVETHPGSDGVIRVVSVRTSTGTYKRPTTQIAILPIEDND
FT                 QQKVEASSTGG"
XX
SQ   Sequence 6064 BP; 1741 A; 1223 C; 1614 G; 1486 T; 0 other;
     gtttggtcct tcggaaccgg attcagtggc cgcgagtgaa tttagatact gccgtgaagt        60
     gtgaaaagaa taacacgaca gttgtgattg tgattagcct ggaaagttcc gtggaactgc       120
     catcggctga tgattcccgc aaaggcggtt gccacgcggt ttggaaaaga gccgaatatg       180
     aaaatccggt gattccaaag tgaatggaga atattgttcc tcgtgcaaag gcgcaaagtg       240
     atgctgaata gacatcgtgt agaagagcga tctatcagca atagtgaagt gattccgaat       300
     tgatttcgga aaagattgat ctggaataac aaggttccgg aaaactcgaa aagttgtttt       360
     acgaaacgaa agaaagtgaa atatggtggc gaatcgccat cttgggagca gtgaatctaa       420
     ccttgaaaag tgaatgtgag gtgtcgtggc ggagcgccat cgtacactga agagcaaagg       480
     gaaacctaac ctcgaaaagt gaaccgcagt atatatgtcg tagtacaggg ctgatagcgg       540
     ctggtgaatt gaaaagaaag tgatgtttct gcgatctaat gccaagaaga aattgttgtt       600
     tccgtatgtg agtggttctt ctccgagtgc ggagcagttt tctacaccga cttcgacaat       660
     tcgggaacag ctagcagaac aagaagctaa gaagaaaagt gataaaatgg ccgaaacagt       720
     ggaagcgttg agccagtgtt gtgaaacgac acgggcgaaa gttgaacgga tctgtagagc       780
     agttcaggcg gctgctggtg atcataggaa gtttagcatt catgcgctac gattgtatgc       840
     taagaatgtt gattccgcgt acgctgaatt caacgacttc cagaatcgga tttacctggc       900
     tgttccagcg agaaaaggtg agttcgaacc aaaatttatt gatttcgaag agctatatga       960
     atatacgagg attgcaatct ccgaaatgct ccaagcctac gaagatgagg agaaagcctt      1020
     gatggtagct gctaataaca agccaaaggc tagtggcagt agtgaccctg gaggcagcgg      1080
     tttgggccac acctctgtga tgtttccgcc aacgcttgtc ttgcagcaaa cagcgcttcc      1140
     aacgtttgac ggacgttacg agaactggtt caagttcaag caaatgttcc gggacgttgc      1200
     ggataaatgc acggtcgact ccgcagcaac aaagttacac tatctcgata aggctttgat      1260
     cgggaaggcg cacggagcga tcgaccaaca gataatacgc gataacgact atgagggagc      1320
     ttggaattcg cttactgagc agttcgaaaa cctgccagcg ttgatcgccg atacaactgc      1380
     tagattgttg aacttgaaag ccttgaacaa tgagtccttt tcgtctttga aatcattgat      1440
     cgacgacgtt gaaaagtgcg ttagctcttt ggaatatcat ggtctgcaaa tggacaaaat      1500
     gtctgaggcg attgtgatta gcctcacagc atcgaaactt gattccagca ccagaaaagt      1560
     gtgggaatct agcgtgaagc gaggaaagct tccagtgtat aaagatatga tggctgtgct      1620
     aaagaatcag ctagctattc tggagcgctg tgagaaggca agaccgcaga caaaatcgaa      1680
     gggttcgaac ttcaccgtga aacatccgtc aactgttaat cccagcaagg ctcatacagc      1740
     gacagtcggc aaatctgatg atggatgtgc attgtgtcgt gcagatcatt tggtcgacca      1800
     atgtgattca ttcaagagtt tgaatgccaa cgctcgctat ggtaaggcaa gacagcatgg      1860
     cctatgtttc ctgtgtctga aaagaggcca tcgaacgagt gattgcaaaa cgacgaagaa      1920
     atgtacggtg tgcgcaagga atcatcatct gctgttgcat cctgaaggaa aaaatgagca      1980
     gcagaaatca agcagcgtag ttgaaacgac tctcatcgag aaacccagtg ataaaccagc      2040
     tgtcaaggat gttacaccgt cgactaattg tcaagtttcg tgcaacaaca atgaagtgca      2100
     tcagcaagtg ctgttagcta cagcggttgt ttatgtgatt gatggatccg gacagcgtca      2160
     tttgtgtcgc gccctattgg attctggggc aatggccagc tttatgtctc agagtctagc      2220
     agaccttttg aacctggcga aggaaaccgc tgatgttcca gttgttggcg ttagtggaat      2280
     gcgaacagtg gtgaagttca aggttcgtgc gaaagttgaa tctcgatcaa ccgattattc      2340
     cttttgtttg gattgtttga tcgtacctcg agtgactgga actctcccta ccaacccggt      2400
     agaggtggac cgttggccga ttccaccaaa cttgaatttg gcagattctc gtttccatga      2460
     gccaaataga atcgacttgt taattggggc agagatgttt ttcgagcttc tgctacaagg      2520
     caagattaag atggccgacg aacttcctat tttgcaagag agcgtttttg gctggctcgt      2580
     ttcagggcga gtcattgagg cagcatcaac caccgtccaa gtgtgtcatg cagcgacaga      2640
     cgaaccatca gacaaggaat tggtgaatgt gctcaagcgt ttttggtcag tggatgatca      2700
     gaatcaggaa gttatggatc gaattgagaa tgatgactgt gaacgttact tcgtggagac      2760
     gtaccgcagg gacagcaacg gtcgcttcat cgtgcggctg ccctttcgca ccaatgtggt      2820
     ggatctaggt gaaacaagag agcaagctga aaaaagactc cgttgtttgc agcgaagact      2880
     cgacaaaaac gttgaactga aggagaatta tgaaaccttc attgaagaat atgttgctct      2940
     cggacatgct cgctttgttg aaggtacgtc gaacaccgac agctacgcct attacctccc      3000
     acatcactgc attttgaaac cggaaagttc cacaacaaaa ataagggtgg tatttgatgc      3060
     gtcagctaag agctcaacga atttgtcttt gaacgacgtg atgatgattg gaccgacagt      3120
     acaaccgcag ttgtttgaca taatgctccg atttcggttc gtaaagtacg cgctcacggc      3180
     agatgtgtca aaaatgtacc ggcaagtgaa ggttcatggt gatgattgtc gatatcagag      3240
     gattttgtgg tacaatgcag aaggacatcc tatcgtgatt gagttgacaa ccgtgacgta      3300
     tggaacatcg gcagctccat ttctggcgac gagatgtctg aaccaacttg ctcttgatga      3360
     acagcgtagt tttcccgatg ctagtgatag ggtgctgaag tgtttctacg tagacgacgc      3420
     actcacagga gcgaacaatc tgcaagaggc aaggcaactg caacgtgatc tcattgacct      3480
     tttggcgaag ggcggattcg tactccataa gtggtgtgcc aacgatgcgg cattgctaga      3540
     ggaaattcca gaggaacgcc gtgaaatgca ggttgatttt gaaagccacg atgtgaatgg      3600
     agtcatcaaa acgctgggat tattatggaa cccaattgaa gacgagttcg tgtttcgagt      3660
     gaagccacca gagaaaccaa ggaatgtttt gacgaagcgg cagatattat cggagatttc      3720
     acgactgttc gacccgcttg gattacttgg acctgcaatg atgattgcga agttagtgat      3780
     gcaagaactt tggcggcaag gtttcaactg ggacgacgtt gtgagtggag aagtgctgaa      3840
     catgtggcga agatttagcg aagaattgtg tgagttgagt gatttgtcgg tccctagaag      3900
     agtaacgatt gatagtgcag tgagttacga aatcatggga tttgctgatg cttctaccaa      3960
     agcctacggc tgcaatgtgt atttgagagg tgtaaaggct gacggtactg cagaaatgag      4020
     gttgttatgt ggaaagtcac gagttgcgcc cttaaaggag gaaaaaagaa aggcgcgcaa      4080
     cgacaatgag cctggtgaac tgacaattcc gcgcttggaa ctatgtgccg caaaactgtt      4140
     gactgaacaa gctaagaaag tgattgaagc tatagaagtg aagattgaac gtgtagtgct      4200
     ttggtcggat tcaaagattg tgttgcggtg gatcgaattt ttgaaggccg acgcacctgt      4260
     atttgtgcgc aatcgtgtag caagcattcg ccagatgaca aatgattgtg gttatgagtg      4320
     gaaatatgta tcatctgaaa tgaatcccgc ggatttgatt tcacgcggtg tttatcccgg      4380
     ttcgatgaag acctgcgagc tttggtggca cgggccgcct ttcctgcaaa cggcgatgtt      4440
     tgaagaatgt tcctggaatg acgctcgaga gccagcagat acagaagaac ctctcgtgaa      4500
     tgatgaagtt gtgacaacgg tgacggtatt ggacaatcgt ccgatggaaa caataatgaa      4560
     ccacagtgac ttccgaaaat tgcagaggat ttttgcgtac gtaactcgat tcatcggcaa      4620
     ttgtcggaag cagaaggcag accgccgatc tggaggattg cagattggag attatcgtga      4680
     ctcaatgttg actctggtaa gaattgtgca aacatcaacg tacggtgcgg aaatcgacag      4740
     actgctgaaa ggcgaatcaa tcaaaagtaa gctccgtaac tttcaaccag ttttcgacgg      4800
     cgatgaaaga cttttgcggg ttggtggacg gatcagaaaa tccgacctgc ctagagatca      4860
     aaggcatcca ttgattttgc cagaaaaaca ccatttgacg gaaatcatca taactgctct      4920
     tcatcgtgaa catctacacg tcggtcaaaa cggattgtta tccattgtgc gtcaacaatt      4980
     ttggccggtg aatgcgaaac ggacgattaa tcgcgtcgtc cgtaaatgtg tgcgatgctt      5040
     ccgtgtgaac ccgaagaatg tggatctgtt catgggcgat ctaccgagct tccgtgtgac      5100
     ggcgtctcat cctttcatga gaacaggtgt agattatgcc ggaccggtac ttttgaaaca      5160
     gggacgaatg aaggcaccaa taaaggcata catagcactc tttgtatgta tgtcaaccaa      5220
     ggcagtacac atcgaattag tatcgtctct gtctactgat tcgttccttg ctgcattgca      5280
     tcggtttgtt ggaaggcgcg gaaatgtagc agaaatattt tccgacaacg gaaagaattt      5340
     tattggagcc aaccgacagt tgaaggaact ccacgctcta atgaaatcgg atgtgatgaa      5400
     acaaagaatc gataatttct gtcaggccaa gggaatatca tggagtttca accctccaaa      5460
     agccccacat cagggcggct tatgggaggc aggtgtaaaa agcgccaaat ttcacctgca      5520
     tcgtatcctc aaggaagcat acttgaccta cgaagagatg agtaccctgt tggtacaaat      5580
     agaggcaatt ctgaattcga ggcctctctg tcaacaatcc gtggatccaa aggactatga      5640
     agcattgagt cccgcacatt ttctcgtggg acgtgaacta acagcagtag ccgaaccttt      5700
     ctatgaccag ttgaaggaaa acaccctatc ccgataccaa ttcgtccaaa gtcgcaagca      5760
     agctttttgg agacgttggt ccaatgaata tgtgacggag ctgcagcgca gaggaaaatg      5820
     gttcaagaac cccactctta ttcggaatgg acaactggtg gtattgaagg aggacaatac      5880
     accaccgcag acctggcccc taggcagggt cgtagaaacg catccaggaa gcgatggtgt      5940
     catcagggtt gtctcggtac gcactagtac agggacttac aaacggccga ccacgcagat      6000
     cgccattctg cccattgaag ataacgacca acagaaggtt gaggccagct caacgggggg      6060
     tgta                                                                   6064
//
ID   BEL-719_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-719_AA-I;
KW   BEL-719_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 374-374 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 243 BP; 68 A; 53 C; 52 G; 70 T; 0 other;
     tgttaagtgt aatttcagtt gcagggtaat cgatagatca aacccacatt gatgtccgag        60
     gggcccatca gcttgatcag aactttttat cttgcagccc acacacttcc tgtgtgagag       120
     cttttgctgc cgttatgatc agaatagtaa aaacgttcag tgcgaacgca cgctttgtat       180
     tttcgatccg aataaagtta aattacagtc cgcgaagtgt ttgacccact gagatccgaa       240
     aca                                                                     243
//
ID   BEL-71_AA-I repbase;    DNA;    INV; 6581 BP.
XX
AC   supercont1.155;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_AA_;
KW   BEL-71_AA-LTR; BEL-71_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6581
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.155; Positions  497027  490447.
XX
CC   Positions [5629-6192] - Integrase core
CC   'TTACC' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..4340
FT                 /product="BEL-71_AA-I_2p"
FT                 /translation="MTMSSRTLRSKRSDNPNQVVGAKVSAKGGVQVVVTED
FT                 PDKSYPVRTCQVCRGMDTDEMVQCDDCQKWHHFQCVGVTQQIENFPWSCAR
FT                 CEAAKGVQEPSSTAGALQRSGSSSKRLPEANSNPVLVSHQQVHAQMQTSTA
FT                 ELYSAAEDSIQPEVTGQVPFVSSLRWVVNTSREPSRNASRVSSVSSSRSSQ
FT                 ALAKLKLQKLEELRIIERREAEQQRITAAEEARKEKVFLEQKYQLLEQAMS
FT                 ESWSSKDDKASRTEQWVASASANCSLLKPPNAVNQFALTERLGKLQVDPLT
FT                 NARIGSSRSSQPEPNPPDPFPVPESMLAYSVDPPAPDRMQHMALGTTSHKP
FT                 LCDQSRLTSSMGVPLRVSITQIPRPCEYREDLRSNQPADPPRPMSLPAVSL
FT                 QTRDSATRYPGSHPVHQPSQNVSTPDYQQFTPHMNRAPHSSTMRTSRAYDQ
FT                 EEDMDPCPISRKQLAVRQAISRDLPTFSGCPEEWPLLLSTFNSTTTMCGFT
FT                 NEENIVRLQRSLKGRAYEAVKSRLLHPSNVNGVMSTLKMLFGQPEIIVDSM
FT                 MSKINSLPPLKEDKLETLVDFAVSVENFCATVDACGLEEYLYNISFLHQLV
FT                 NKLPPSIKLNWAQYRQILPIANLPSFSSWLYSLAEAASAVIIPNVAFESKP
FT                 NRSDPRAAKKINSFVNAHSEDTTSGYHTAAQFNAKIEANCCPVCKESCKSI
FT                 ATCKRFLEFSRDSRWATVRDLGLCRRCLRRHKGGCQSKLCGRNGCELKHHE
FT                 LLHNDQKEAPPSNRSNSQNTSSSTQHQVSITSPPPNPSDHGCHTHRLTSSQ
FT                 VLFRYLPIVLHGKQRSIQTFAFLDDGSELTLVDEELVNELELEGEPMPMFL
FT                 HWTGGAKRREEGSRSVKLQVSAKHNESKIYAMNGVRTVAELLLPSQTLNFQ
FT                 ELSTRYSHLKGLPIDSYQDVRPRILIGMKDQHLTLVQKSREGTLHQPIAVK
FT                 TRLGWTVCGGGDQENSANLVHSVFHVCACDSPTDDDLHRRMKEYFTLDSLG
FT                 IAYPVKKTLRNAEEERALTLLEARTVFKGDRYETGLLWRHDDLRLPDSRPM
FT                 ALRRLQCLKKRMNKDPKLAEVLNSKISEFVTKGYARKLSDKELGQIYPRVW
FT                 YLPIFPVTNINKPGKIRMVWDAAATAYGVSLNSVLLKGPDQLCELFSILIQ
FT                 FREGRIALTGDVREMFLQVLMRPVDQQCQRFPWYEEDGTLSVYILQVMSFG
FT                 ACCSPCSTQYVKNLNAERFKNDYPTAVEVIQKRHYVDDMLVSVDTEEEAIQ
FT                 LAQQVKRVHSEGGFEIRNWISNSKHVIQALQECQTEEKNLDVSSEIATEKV
FT                 LGMWWCTNTDTFTYKVGWNRYGKALLEGQHCPTRRQMLRVLMSMFDPLGLI
FT                 SQFLVYLKILLQEV"
FT   CDS           5008..6291
FT                 /product="BEL-71_AA-I_1p"
FT                 /translation="MTHYASPDAVIRVEEYSNWKRIVKIVALLYRFASNCK
FT                 RQLQRKPKMVGPISNLEFKTAESYLFRQAQQETFAEEIAHLRKPQDYLEPP
FT                 VPAIPKSSSLYHKSPWMDECGVLRMRGRISACEYATEDAKHPIILPRDHHT
FT                 TKLIVAHYNQKYHHQNHETVVNEIRQKFSIPHLRSIYAKMRKNCQRCKNDR
FT                 AVPRVPIMADLPAARLDAFTRPFTHVGVDFFGPYEVVIGRRAEKRWGMLAT
FT                 CLTIRAIHIEVVHSLSIDSCIMALQNFIARRGKPRTFFSDRGTNFIGARRV
FT                 LQETENAISQEELMKEFMDADTNWKLLPTASPHMGGSWERLIGSVKKKNLM
FT                 AILPARKLTDEVLRNLLTEIENIVNSRPLTHVPIDDDSAPALTPNHFLLGS
FT                 SSGLKPLSNADGSGVVLRQSWLLSQIQANQFWKR"
XX
SQ   Sequence 6581 BP; 1894 A; 1587 C; 1533 G; 1567 T; 0 other;
     atttattatt tccgtttact gcaaaaaatc cggtcatgtc ttttataacc tgtaaataaa        60
     aaataaaata atattttaat cagtccacag tccgggaagt ctcccctttt gcgcttacgg       120
     cagccagtat ttatagctca aaaatactgt aggtacgatc aagtaaaagg taccagagtc       180
     ataaggaata tcacttgaga taggtcgaca tgacaatgtc aagtcgtact ctacggtcaa       240
     aacggtcaga taacccaaac caagtggtcg gtgcgaaagt tagtgcaaag ggtggtgtgc       300
     aagtggtggt cacggaagat ccagataaat cctatcccgt gcggacatgc caggtgtgcc       360
     gaggaatgga cacggatgag atggtgcaat gcgatgactg ccagaaatgg caccacttcc       420
     agtgtgttgg agtaacgcag cagatcgaga attttccctg gagttgtgcc agatgcgaag       480
     ccgcaaaggg tgtccaggaa ccaagttcga ctgcaggtgc tctccaaaga agcggtagtt       540
     catcaaagcg gctgcctgaa gcgaattcga atccggtgtt agtttcacat cagcaggtcc       600
     atgctcagat gcaaacgagt acagctgaac tttattctgc agcagaagac tctattcagc       660
     cggaagtcac cggtcaagtt ccgttcgtgt cttctttgcg atgggtagtg aatactagca       720
     gagaaccatc tagaaatgct tcgagagttt cttcggtatc gtcaagtcgt tcttcacaag       780
     ctcttgccaa gctcaaacta caaaaactgg aggagttgag gatcattgag cgacgtgaag       840
     cagaacagca acgaataacc gcagcggagg aagctagaaa ggaaaaagta tttctggagc       900
     aaaagtacca attattggag caagccatgt ccgaaagctg gtcctctaag gacgataaag       960
     cgagccgaac cgaacagtgg gtagcaagcg caagcgcaaa ttgtagccta ttaaaaccgc      1020
     caaacgcagt caatcaattc gctttgactg agcgattagg taagctgcaa gttgatccac      1080
     taactaatgc acgaatcggg agtagccgtt catctcaacc agaaccaaat ccaccagatc      1140
     catttcctgt accggagtcc atgttagctt actccgtcga tcccccagcg ccggatagaa      1200
     tgcagcatat ggcattaggc acgactagtc acaaaccact gtgcgatcag tctcggttaa      1260
     cttcgtccat gggagtcccg ctccgggttt caatcacgca aattcctcgg ccctgtgaat      1320
     atagagaaga tttacgctcc aatcagccag ctgatccacc acgaccaatg tcactgccag      1380
     cagtgtcact ccaaacgcgt gattcagcaa ctcgatatcc tggatcacat ccggttcatc      1440
     aaccatccca gaatgtatcg actccagact atcaacagtt cacgccacat atgaatcgtg      1500
     ctcctcattc ttctacaatg cgaactagcc gtgcctacga ccaggaagag gatatggacc      1560
     catgtcctat ttctcgaaaa caactagcgg tcagacaagc aatatcgagg gatctgccca      1620
     cattctctgg atgccccgag gaatggccat tgttactttc tacctttaat agtacgacaa      1680
     caatgtgtgg tttcaccaac gaagagaata tagtccgtct gcagcgaagc ttgaagggtc      1740
     gtgcgtatga ggcagtcaag agcagattgt tacatccatc aaatgtcaac ggagtcatgt      1800
     cgacgctcaa gatgttgttt gggcaacccg agataatcgt agattcgatg atgtctaaaa      1860
     taaattctct tccgccactt aaggaggata aattggaaac ccttgttgat tttgcggtca      1920
     gcgttgaaaa tttctgcgca acagtggacg cgtgtggttt agaggaatac ctttacaata      1980
     tatcctttct ccatcaactc gtcaacaagc ttccaccgtc gattaaattg aactgggcac      2040
     agtataggca aatccttccg atagccaacc tgccttcctt cagcagctgg ctgtactcac      2100
     ttgcagaagc agctagtgcc gtcatcatcc cgaatgttgc cttcgaatct aagcccaatc      2160
     gtagtgaccc acgggcggca aaaaagatca attcattcgt taatgctcac tccgaggata      2220
     ccacgtcagg atatcatacc gcagctcaat tcaacgcaaa gatagaagcc aattgctgtc      2280
     cggtatgcaa ggagagttgc aaatcgatag ctacgtgtaa acgatttttg gaattttcac      2340
     gtgattctcg ctgggcaacc gtgcgggatc tgggactctg ccgcaggtgt ctacgtcgac      2400
     acaagggagg atgtcagtca aaactgtgcg gaaggaacgg ctgcgaactg aaacaccacg      2460
     agctactgca caatgatcag aaagaagcac caccgtcaaa ccgttcaaac tcccaaaaca      2520
     cttcttcgtc gactcagcat caagtctcca ttacatctcc accaccaaat ccgtccgatc      2580
     atgggtgtca cactcatcgt cttacatcaa gtcaagtttt attccgctac ttgcctattg      2640
     tattgcatgg aaagcaacga tcgattcaaa cgttcgcctt tttggacgac ggatcggagc      2700
     tcacattggt cgacgaagaa ctggtcaacg aattagagct tgaaggagag cctatgccaa      2760
     tgttcctgca ttggaccgga ggagctaaac gccgagaaga aggatcaaga agtgttaagc      2820
     tgcaagtttc tgcgaaacac aacgagtcga agatttacgc catgaacggt gtgcgaaccg      2880
     tagcagaact gctgcttcct tcacaaacgc ttaactttca agagttgtca acacggtatt      2940
     cacaccttaa aggcttaccg attgattcct accaggatgt tcgaccgaga attctaatag      3000
     gaatgaagga tcagcatctt accttagtcc aaaaaagccg cgaaggaact ttgcaccaac      3060
     cgatcgccgt taaaacccgt cttggatgga cagtttgtgg gggaggagat caggaaaatt      3120
     ccgctaatct cgttcactct gtatttcatg tctgcgcatg tgactcaccg acagatgacg      3180
     accttcacag aaggatgaag gagtacttta cattagacag cttgggaatt gcatatccgg      3240
     taaaaaaaac tcttcgcaat gcagaagagg aacgagcttt gactctcctt gaagcccgta      3300
     cggtgttcaa aggagatcgg tacgaaacag gacttctttg gcgccacgac gatctacgtc      3360
     ttccagacag tcgtccaatg gcacttcggc gtttgcagtg cctcaagaag cgaatgaaca      3420
     aagatccaaa gctagctgaa gttctcaatt caaaaatatc tgagtttgtc acgaagggat      3480
     acgccaggaa gctcagtgac aaggaactag ggcaaatata tccccgggta tggtacctgc      3540
     caatatttcc cgttaccaac atcaacaaac ctggtaaaat tcggatggtg tgggacgcag      3600
     ctgcaaccgc ctacggcgta tctctgaact cagtcttact taaaggacct gaccaactat      3660
     gtgaattatt ctccatacta atccaattcc gcgaaggacg catcgcctta acaggagacg      3720
     ttcgagagat gtttttgcaa gtactcatgc gtccggtaga ccagcaatgt caacgttttc      3780
     cgtggtatga agaggatgga acactctctg tttatattct gcaggtaatg tctttcggag      3840
     catgctgttc cccctgcagc acccagtacg tgaagaatct gaacgctgaa cggtttaaaa      3900
     acgactatcc gacagccgtt gaagtgattc agaaacgcca ctatgtcgat gacatgcttg      3960
     taagcgtaga cacagaggaa gaggcgatac agcttgccca acaagtgaag cgtgtacatt      4020
     ccgaaggcgg attcgaaatc cgcaattgga ttagtaactc caaacatgtc atacaggctt      4080
     tgcaggagtg tcagacagaa gagaaaaatc tagatgtatc atcggagata gcaacggaga      4140
     aagtactcgg aatgtggtgg tgcaccaata cggacacatt cacctataag gtgggctgga      4200
     atcgttatgg taaagcgcta ctagaaggtc aacattgtcc aactagaagg cagatgctgc      4260
     gcgtcctgat gtcaatgttt gatccacttg gattgatttc tcagtttctg gtgtacttaa      4320
     aaatcctgct acaagaagtt tagcgttctg gtgttgactg ggatgataaa atggacggcg      4380
     ttctgttcga aaagtggcaa acgtggctta gagtactccc acaagtcgaa cacttacaaa      4440
     ttcctcgttg ttacttctat caacatactg ctgcctgcgg gaccgtccaa ctccacacgt      4500
     ttgtcgacgc tagtgaaaat ggaatggccg ccacttgcta cttacgtttc atccgtgaca      4560
     atgtcgtaga atgtagttta gtggccgcta aaactagggt agcaccgctg aaattcctct      4620
     ccattccgag gctggatctc caagcagcag tgatagggac gagactagcc cgatcagtat      4680
     ctgaagccct cttaatccag atttcacgcc gaatgttttg gtcggattca caagacgtac      4740
     tatgttggat caattctgac catcgccgat tttcgcaatt cgtggctttt cgagttagcg      4800
     agatcctaga cacaacagag atgtacgaat ggatgtacgt ccctaccgac ctgaacgttg      4860
     ccgatgaagg aactaaatgg aaaggattac ctgatctcac tcctcaatcg agatggtata      4920
     tagggccaca attcctttat cactcggaag aagattggcc tcagtcgtcg aagagtagca      4980
     acactgcaga ccaagagctt gagcgttatg acacactacg cctcgccaga tgctgtgata      5040
     cgtgttgaag aatactccaa ttggaagcgg attgtcaaga ttgttgcttt actctaccgc      5100
     tttgcaagta actgcaaacg gcagctacaa aggaagccta aaatggtcgg tcccatttcc      5160
     aacctggagt tcaaaactgc agaatcgtat ctctttcgcc aagctcaaca agaaaccttt      5220
     gcagaggaaa tcgcacacct cagaaaacct caagattatc ttgagccacc tgttcctgca      5280
     attcctaagt caagttcact ttatcataaa tcaccctgga tggatgagtg cggagtgtta      5340
     agaatgcgtg gtagaatcag tgcctgtgaa tacgcgaccg aagacgcaaa acacccaata      5400
     atacttcccc gtgaccatca taccaccaag ttaatagttg cacattacaa ccaaaaatac      5460
     caccatcaaa accatgagac cgttgttaac gaaatccgtc agaaattcag cattccgcat      5520
     ttgcgctcga tctatgccaa gatgagaaag aactgtcagc gctgcaagaa tgaccgagca      5580
     gttccacgtg tgcctattat ggccgatcta cctgcagcac gcctagatgc tttcacacgc      5640
     ccattcacac atgtaggtgt cgacttcttt gggccgtacg aggtagtcat cggtcgtcga      5700
     gcagagaaac gatggggaat gctcgccact tgtctcacaa tccgagcgat tcacatcgaa      5760
     gttgtacact ccctaagtat agactcgtgc atcatggctc tgcagaattt cattgcaagg      5820
     agaggtaaac cgcgtacatt cttcagtgac cgaggcacca acttcatagg tgcaaggcgg      5880
     gttctccaag aaacagagaa tgccatcagt caagaagagc tcatgaagga atttatggac      5940
     gccgatacta actggaaact tctgcctaca gcttcaccgc atatgggcgg tagctgggag      6000
     cgtctaatcg gcagcgtcaa aaaaaaaaat ttgatggcga ttctgccagc taggaaactt      6060
     acagatgaag ttctgcgcaa cctattaacg gaaatcgaaa acatcgttaa ctccagacct      6120
     ctaacacatg ttccgattga cgatgattca gcgcccgcct tgaccccgaa ccacttcctg      6180
     cttgggtcat ccagtggctt gaaacctttg agcaatgcgg atggcagtgg tgttgttcta      6240
     cgtcaaagct ggctcctatc tcaaatccag gccaaccaat tttggaagcg ataggttacc      6300
     gattaccttc cagagataac ccgccgcacg aaatggttca tgcataccaa gcctatcgaa      6360
     atcaacgatg ttgtggtgat tgtcgatgcc aaatctccac gaaattgctg gtcgaagggt      6420
     cgaataatca acattcaggt cggcagagac ggtcaaccta ggtcagcaac cgtaaggact      6480
     gcggtcggga tctacgagcg accagtggcc aagttggccg ttttagacgt acggcgcgaa      6540
     gctgagtaag ctggccaggt ggccagcgta cctgggggga g                          6581
//
ID   BEL-71_AA-LTR repbase;    DNA;    INV; 678 BP.
XX
AC   supercont1.155;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_AA_;
KW   BEL-71_AA-I; BEL-71_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-678
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.155; Positions  490446  489769.
XX
SQ   Sequence 678 BP; 241 A; 131 C; 127 G; 179 T; 0 other;
     tgttggcgaa tcctcgccat cgcgccttca caaccatatt tgggacaccc tattgtcggg        60
     tgaacgggac aggaatgaca gttttcactg tcatgcggtg agtcaggtga aagtacacgt       120
     tccacaaact gatagttaaa cctaaattct tagcctaata gtctaaacct aagcagtaaa       180
     attaagtgaa ttctaagcct atgctaaaag gtaaattgaa ctataaaatt tgttgaactt       240
     atgaaactat atgggctatt tacatagtta tgcagaaacc tacaccctac atggtgtaac       300
     ctaaaagtcg ttagagttac tatcgcctac cattacaact gaggtttaat agtacggact       360
     aatacgacaa aatacgagga tagacatttg tacaacggtt gaagaccaac acgacacgag       420
     acagactgaa ttgactacac ggagggaaac gaaatactga aatcgggact aaacgtaagt       480
     tcacaataat gcttataatt atttaaaaca cagcaaacaa cataatgata cacaaactgg       540
     attggaattt gataaaatta tgtaattttc tcagggaaat aataatctac cggacagtaa       600
     ccaaaaccca ttctccggtc gtttcatttc cgggattatt attgcggaaa attccgagag       660
     cgttggcaat ttccaaca                                                     678
//
ID   BEL-71_CQ-I repbase;    DNA;    INV; 8013 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_CQ_;
KW   BEL-71_CQ-LTR; BEL-71_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8013
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5075-5626] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           6180..7967
FT                 /product="BEL-71_CQ-I_1p"
FT                 /translation="MCSFLGHINCFEGSGLIAYDCGSPEVNLTSYSLLDVA
FT                 SCLPPSNNLTTHEVQIQVLQRNVKSDIKVYQCKVIIKRKIRHCGMHSHTSD
FT                 YEGSYKYIVKEFTSEECRTSQQLGIVRLTYEHQINEIKRNETTRGETLIEG
FT                 TVRNSDCKGETYKTPEFTWFDALVYYEYEITLRDYTAVVDYENDVILLRNG
FT                 LTCTYSHGKCLDSEDGYITWDVAFNNKCEETEFEVIYEGTVNKTKNENTKT
FT                 HREGFNVVYSTVSDTHLFSIRTREQTKVCGHPGYLTDHPRIIVVEVIGFNS
FT                 PFTKKSSPGRNFDLFTYFNSKITLVENYVGQSMSQLYNTVMTEMCKVDKNL
FT                 METKLTLARLNPTEFVTSIIKRSGFTAVVAGEVLHILECKPVYVTPKSDEI
FT                 CYQEIPVIYNNQTMYIAPVTRVLQNRGTQIDCTPLLPAKFQIGGRWYTTDS
FT                 RFRETTAPMKLTTDLLTTWSYTPLPNLMQSGVYDAESVVKMRNLIYEQGDR
FT                 RVASNVMHKILIGQQPNFQGFNFEALNVVEKAQNIIYSIFESSYIIGFCRI
FT                 SSFFSGIIMMSYVCILIFNPMTWIMIYRKIKCNKTREQARININLETHL"
XX
SQ   Sequence 8013 BP; 2683 A; 1459 C; 1653 G; 1870 T; 348 other;
     gagcgtaagt tccgcagtta taagaacgtt cccaccgacg tttttacatg gtggctctgc        60
     agagaggatc aggagaagtg cttgtcggaa tcaggcactg aggaccccga gcttccggtc       120
     agtcgaaatc tgatcgtgat cgtaagtata agcgtgtccg acgctataga gcggacaagt       180
     gatcaagtgt tcttgagcag tgtcaggctc agatagtgcg gacgaattat cgtcaagagt       240
     gtaaaagcgt ctccgacgct ctagagcggt caagtgacca agtgtgagca gtgtcaggct       300
     cagatagtgt agacgagtta tcgtcaatag tgaataatcc tggacaatag tccagaagaa       360
     caccgtgaaa tcctgggaaa gaacccagaa gaagaagaaa gtaagaagaa ccttttaata       420
     ggtgattcaa cattaaactt tacttcaagt aaagggaaga ctggatgaaa atccagagat       480
     ccgcttggtt gcagaaaatc accaaaaata gtaaaaaaaa aaaacctttt aatagatagg       540
     tgatttcaag aagtgaagtg agtgattaaa ggaagactag aaacacatat ataaataaaa       600
     atatatatat aataaaggaa taaaaactgt aagattgcaa agcagattta aatcggagas       660
     agtgcaataa aaaaaaaaaa caataagaag cagcttaaca sagtggatcg tcgagcgtcg       720
     aaaaggaatc aacgacgagt gcatcaacaa gcgacgtgtc aaccagcaac acccatcgag       780
     catcaagaaa gatcggcgam gcatcgatca tctgaatcgt aaggtattca gagaagatgg       840
     attacaagtt cacwgcgaac aaaaacggta gttgccggmg gtgcgacaat ccagatgatg       900
     tcsagcaatt catggtatct tgcgacgatt gtgatcgttg gttccacctg caatgtgtag       960
     gacttgcccg tactsctaag taggaaggam cactggmast gcgtcaaatg tgaagctatt      1020
     tgccaagact ttacaaagtt agttgaacaa aaggctctat caaatctmtt ggagagaagt      1080
     attgaagatg tttcaacwma accagcagca gaaaattcag agacaaatca agacttgcaa      1140
     gttcttgcaa ggatagtcga taaaattaaa aggactgtca gctcaacaaa catcttcaga      1200
     tcattttagt gattaggcaa actttaatgg acttgccaga attcgacggg tcttacaaaa      1260
     cctggccaag gttcaaacaa accttttatg aaaccaccaa gcawggtaat ttttctgatt      1320
     tagaaaatat taatcggcta gaaaaatgtt tgaaaggwga agcactaagc agagtcaact      1380
     ccctactaat ggattcaagt aacgtgagcg aaattatgaa cattttagaa gaccgatttg      1440
     ggagtgtcga acgagtctac aacgggttgw tgaacgatgt tttagcattg cgtaacccga      1500
     gttttgagaa tcctaaatcc atgattgatt ttatatctgg aattggagat ttggttatta      1560
     atatggagtg cttaatcatg aagaatactt gaacgaccat agactagttc ggatctcgcg      1620
     aacaagctac catctggtct acatcaaaaa tggttgagga atttgaacga agaaaaaacg      1680
     ctgtcggcga ctataaaccc atatatcgct ccaacgttaa aagaccttta cgagttgtta      1740
     aaaccagaag aaaaattagc tattgcgctg ttagccgaaa gagggcacta agaaagttca      1800
     agttgaagaa ctagatcaga gcgaatttca cacgcgggat acaagcaaat tagctgtaca      1860
     agtgtaatgt gtgaamaaat cacaagctga ctgaatgcga tgaattcaag aaaatgtctc      1920
     cagaagaaag gagaaaattt gtagcggaaa agaaattatg cttttcttgt tkacgcgcaa      1980
     atcatktggc aaaacattgt agatttgcaa gaacttgcaa catagaaggt tgcaaaagta      2040
     aacataatcg ctgcttcatg gaagcaaacg gaaaccggag cagaaaacct acaaaagaac      2100
     ataaggtgaa ttgtcacgtt aagagataca acaaggttta ctatcaaatt gttccagtaa      2160
     ctttgatgaa tggtgacaat aaattcgaaa catttgcatt ctttgattcc ggctcatcag      2220
     tcagtctcat taataaaaat gttgcgatca gctccaagtt aaaggaacag ataaaccaat      2280
     gacattggcw tggacmaatg gwgawactca agaagattcc aaaagtatgt ctgttcaatt      2340
     gaatatcaaa tctcccaacg gaaaaasgtt caacttgaaw gacctgcgca ccgttaaaga      2400
     tttatcgctt ccaacgcaat ctgtagacgt taaccgtctt aaaaaamagt tttcttatct      2460
     taagaatagt aagttggaat cttatgaaaa agcagtgcca acaatactac tgggtttacc      2520
     acatgcatac ttgttcaaag gtaatgaaga aatatcagga aggttcaatg aaccaattgc      2580
     aagaatgacc aaattaggtg ggtcttattt ggaagtagta agcwtgacgt tcataacaaa      2640
     aaggawcatt tgttcataat tcaagaagtc aaaaaagaag acagtcaata aagaaatggt      2700
     gtccaaattc ttctctgttg aatctttcgg agtaaaagtt cccsaaaacg wkcttatttc      2760
     taaawcmgat gaacgcgcmc tmmagataat gggcgawacm wtagwaccaa cmgaaagkgg      2820
     wtatgaaatt ggtctgctmt ggaagggcga mgwkgttgaw ctwccwaaca gctwcaaaac      2880
     mgcwctaagt mggttcctsm tkctggaaaa gaagwkmkcc aaggatmcwk cwktsaagga      2940
     wtggtatmac gacaaaatmg acgaatactt gsgwaagggc tacmtgmgga agttgagccc      3000
     gsaagaakcm ktgackgaam ctccgagaac mttttacctg ccccacttca taackgwaaa      3060
     taagaacaaa sagccmccaa aaccaaggtt ggtcttcgat gcagcggcaa aaattaacgg      3120
     tgtttcatta aattcgaagc tgttgtctgg acccgatacg accgaatcat ctctcggagt      3180
     taaaatgcgc ttcagggaag gacctatcgc cgtatccggg gatataagga gatgtttcac      3240
     caggtgggaa tgagtaaaga ggatagagac tctcaaagat tgtttctcgg aaagcaatcc      3300
     tgaagaacgc ccttgacata tatgaaatgc aagtaatgac atttggagcc acttgctcac      3360
     cagcctgtgc ccaatacgtt aaaaacgcta acgcaaaaca atttttgaat acttgtccag      3420
     aggcagttga agctatgatg aaaaatcatt atgtggatga ttatctagac agcttcagcg      3480
     atttgaacaa ggcaacaaaa attgtsctag atgtgataaa aatccacgac aacgcgcact      3540
     ttaagatgag aaattttatc tcaaactcaa aagcattgct ggcaaattac tacccggtga      3600
     tagagtatct gcattgaacg aaatcaaatt agacatggac gagaacgttt ttgaaaaagt      3660
     acttggcatg tactggaata cggataaaga caattataaa tttaaaataa aagccaaaat      3720
     tgaatccgag atacaagatc ctacaaaaag acaattatta tcgtttgtta tgagcattta      3780
     cgatccctta ggtttgattg cacacataac aatacactca aagatcatta tgcaagacct      3840
     ttggcgtgtt ggaatagagt gggatgacaa aatcccagat tctgtaaaag aagattggtc      3900
     tacgttggat gaaamkatta tcwwcactgg acamcctwag gattcccaga tgttactcat      3960
     atgcaaagaa cgtwacsaaa mgwgaacttc acgtwttttg cgacgcgtcm kcaagmgcgt      4020
     acgckgccgt cgtmtacatm agaaccatac mwgmtgaggg mattgacktg acgatwktag      4080
     cwggwaaatc aaaggttgcc ccwacmaaaa ttwtgtcaat mcckcgtttg gagctacaag      4140
     ctgcgstwct mggaacwaga ctagcaaaca ckgtkcwgaa ggaamtamgg ttgkmgattg      4200
     acamwgtagc tcactggtcc gactcaaaaa cwgttctgag ctggataaaa tctgaastma      4260
     ggaaatataa gcaatttgtg cagtacmgag twagtgagat mctwgacasc acagtggagt      4320
     ctcaatggmg atacattgac wcggccwmma accccgcaga cgaagsaact aaaacgatmm      4380
     cawcmmawtc aaaatgggtw kmcggwccms mkttcttgaw aacwkacgat aacctcwgtg      4440
     ggawttggag awaaaggkwc mscaaactgt tgatctaagc catgaggagc tkcgwcctat      4500
     kttcacmatm kcakckgtag akaaaccwaa cttkgawtgg wtgaacatwg awtggtgctc      4560
     kgattggamc cgcttgaaga ggtcggtgtg tatmgtmwtg aagtacwtwg astggctmaa      4620
     acgtaaakcw aagmagacaa catttgacaa waakatwaca gcctctgaca tggaaaaggc      4680
     ggagacwats ctwatcmaga aggcacaatg ggagtcgttt mscgatgaag tgttggactt      4740
     gmmaaccaag aawasmatcg awgaakmgag caawatwmga mcactwwcac cgwtcctakm      4800
     kgaagatggm gcamtggwwt cwgamactcg statgwmaat gcwgaatgck taccwtatgg      4860
     mgckmgkcaw ccatwcatwc tsccwgaagm wcatcatgtw tcasawctcg twttgaagaa      4920
     wcawcacgag wtmtttwamc ataagaagas mgawgcwgca atmgccgcag tkmgacwgaa      4980
     ataccatatm attcasatwa amgcagswat gmawagagtk gkcgwtmgat gccaatwttg      5040
     caaaaacwmk mgsgckaagg cttwmgctcc gmgaatggcg ccwwtgcctg aatgccgwmc      5100
     kcagccgtwc gtaaaaccmt ttackcatac aggwgtwgat tattttggcc cwtacaacgt      5160
     mtcaatmggw agaaggwccg aaaagmgwtg gggwgtcgtt ttcacmtgta tgacsacwmg      5220
     agcagtttat ctggaastkg ctcacgatct aagcgcwgac gcsttcwtsg tstgcttgaa      5280
     mtccgttcaa agcagacggg ggaagatwaa gttcttgtac agcgacaatg gcacmaactt      5340
     tgtmggtgca gataacgagw tgaagaagat ccgccatmgg ctgkcgtcwg acggkatcgw      5400
     wtggmmcttc awcccwccmk cwtccccwca tttcggwgga gcwtgggaac gwatggtwmg      5460
     agaagttaag wccctgcttc cwagcgawac catgcctgaa cacacgcttm gakcwctmct      5520
     mactgaaatt gaattcatca taaactgcag gccwctkact tctatttcat tggatgctac      5580
     tgatgatgaa ccgttaacac cgaatcattt tctgatcggg tgcgcaggcg gatctgagcc      5640
     atctttaaac gatgcttcta aagctgaagc tacaaggcag cagtggaaaa gagttcaact      5700
     gttggcaaaa aattattggg acagatggct gcatgaatat ctccccacac aagctaagag      5760
     atcaaaatgg acagaagcca ttagaaacgt aaaagttggc gatatagttc ttatcgcaga      5820
     tgataatgaa aaagcaaaat ggcagaaagg aattatcgaa aaagtacacc catcaaagga      5880
     tggatgcgta agatcagctg acgtaaagac taccactggc gtatacacca gaccagtagt      5940
     caagttagct gtattggatg taggccttcc agaaggtcaa aaacatcaac tttcagacat      6000
     taacgatact aataagcgta tcactcgaag ccaaacaaag attcaaaaca gaaactttgt      6060
     gggactaata aattcgattg aacatgatga tgacgattat gaaccaaata aaactaaact      6120
     aatcattgga aaaaagcaaa cctttcacaa ggcagaatct gctgctaaca ttatacttaa      6180
     tgtgtagctt tctgggacat ataaattgct ttgaagggtc tggacttata gcgtatgact      6240
     gtggaagccc cgaagtaaat ctaacgagct attccttatt ggacgttgct tcatgcctcc      6300
     caccttcgaa caatttaaca acgcatgaag ttcagattca agttcttcaa agaaacgtta      6360
     agagtgacat aaaagtttac caatgcaaag ttatcataaa aagaaagata aggcattgcg      6420
     gaatgcactc tcatacatct gattacgaag gaagctataa atacatcgta aaagaattca      6480
     cctctgaaga atgtcgaaca tcacaacaat taggaattgt aaggctaaca tatgagcatc      6540
     aaataaacga aataaaacgg aatgaaacta ccagaggtga aactctgata gaaggaactg      6600
     tgagaaacag tgactgcaaa ggtgaaactt acaagacacc agaattcaca tggtttgacg      6660
     cgttagtgta ttacgaatac gaaatcactc tacgcgacta caccgccgtc gttgattacg      6720
     aaaacgatgt cattctgctt agaaacggct taacttgcac atactctcat ggaaaatgcc      6780
     ttgattccga agacgggtat ataacatggg atgtcgcatt taataataag tgcgaagaaa      6840
     ctgaattcga ggtgatctac gaaggtacag ttaacaaaac aaaaaatgag aacacgaaaa      6900
     cacaccgcga aggtttcaac gtagtttaca gcaccgtttc tgatacgcac ttgttctcta      6960
     tccgtaccag agaacaaaca aaggtgtgtg gtcatcctgg ctatctaacc gatcaccctc      7020
     gcataattgt agttgaagtt atcggattca actctccgtt caccaaaaaa tcttcaccag      7080
     gaagaaattt tgatttgttc acgtatttca actccaaaat aacgctcgtt gaaaattacg      7140
     ttgggcagag catgtctcaa ctttacaaca cggttatgac cgaaatgtgt aaggtagaca      7200
     aaaatctaat ggaaacaaaa ctgacattgg ccagacttaa ccctactgaa tttgtcacca      7260
     gtatcatcaa acgatctggt tttaccgcag tagtagcggg agaagtccta catattctgg      7320
     aatgtaagcc agtatacgta actcccaaat ctgacgaaat atgttaccag gaaatcccag      7380
     taatatacaa caatcaaact atgtatattg ctccggtaac tagagtactc caaaacagag      7440
     gaacgcaaat tgattgtact ccgttgctgc cagcaaaatt tcaaataggt ggaagatggt      7500
     acactactga tagtagattc agagaaacaa ctgcccctat gaaactaaca accgacctat      7560
     taacaacttg gtcgtacacc ccgttaccaa acctcatgca gagtggagta tacgatgcag      7620
     agagcgtagt gaagatgaga aatctaattt atgagcaagg cgatagacgc gttgcgtcaa      7680
     atgtaatgca caaaatcctt atcggacagc aaccaaactt tcaaggattc aattttgaag      7740
     cactaaatgt agttgaaaag gcccagaaca ttatatactc gatttttgaa tcatcatata      7800
     ttataggttt ttgtcgcatt tcatcattct tttctggaat aatcatgatg agttatgtat      7860
     gtatactaat atttaatccc atgacatgga taatgatata caggaagatt aaatgtaaca      7920
     aaacaagaga acaagcacgg atcaacataa atttagagac gcatctgtaa tattttattt      7980
     tgtaaaccat aggatgattt acgggtcccg gaa                                   8013
//
ID   BEL-71_CQ-LTR repbase;    DNA;    INV; 497 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_CQ_;
KW   BEL-71_CQ-I; BEL-71_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-497
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 497 BP; 153 A; 102 C; 114 G; 127 T; 1 other;
     tgtagacgcg tagtgaacat ttataaagat ccggaaatat cttcaaaccg gacatttcaa        60
     taagatttat tctcatagga aataccaggt agattcacct gaccacaggg gggctaccaa       120
     gaacaaagga aatatcaaag ggttaatgag attagtgaga aggtagacac catgtggcga       180
     ggtagttaaa aggattacgt gacaaggaag gaagtgtgta aatctgatta atccgtcccg       240
     cttactctta tgctgatcaa taatttaaac tatgtactcg gtagtggaac tcgtaggctt       300
     aaggttacat tgtacaaatt ttccaaataa aggtcaagtt cggaggtcac tcccaaaaac       360
     ctgtgtatta atcacastca gtattgaact cctcgtcctc gatttttggg aaacctgcgg       420
     tctcgactca tccagcagtc ggcagcggct tcacccggga tcatcgccag caggactgct       480
     gcagtgttcg gcagcca                                                      497
//
ID   BEL-71_DTa-I repbase;    DNA;    INV; 7644 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.10, Created)
DT   07-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7644
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5705-5705 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..7617
FT                 /product="BEL-71_DTa-I_1p"
FT                 /translation="MAPNSIHQLLTGQLSIGEQIQNVIRNYKKDSVDRKTK
FT                 PAYYRERLLTLESLWDKFNSGDNQINIFLKGVTLEHDYFNNEFFNKIKQLV
FT                 EDYKTEFNNQLSLLEADVTSIASTAEDIEIESMFREQRVLLDCLERIINKM
FT                 TEETKQNFSTVITQYWNEIKDIHVQIYKKFKDPKELGYDDSRYMAAEDAVI
FT                 KIQTEMYVKKETTNSSPTNAVQNALHFPKVAIPKFDGDYLKWQQFHDIFKK
FT                 MIHESTLPTIQKMWYLKTNVNGEAERLIRHLSLTEANYSTAWKTLEERFNN
FT                 RRVLSNTLIQKLLDHSMITNDSKTIKSLHDNVKETLSALNNIGIETDKWDP
FT                 LLLCLLTKKLDRPNHLLYEQSVQNTRQIQPLNEFLSFLEQRFLTLEAIGSE
FT                 KGKKQNTCASVGAETQYNCFFCKKPNHSIYKCNEFLKKTPAERLNWVQKQK
FT                 LCVKCLSQNHPSKTCTKRDCFKCNKKHNTLLHLETKPEFSDSITAASASGK
FT                 QSSYILLATARVIIQGVNGQKAEFRALLDSGSQINAISERAIKMLSLKTTN
FT                 SMLKINGIGGKCQTSNARINVQLKSKQGDFSSRLEAMVLPHIVADQPTYTI
FT                 STDNWKIPKNIMLADPQFGKPGKIDILLGAEHYYNIMQPECMSIKNGLPKL
FT                 QNTKLGWIVAGKISERAPTSSVCAVLTEGEKVDEQLAKFWELDNFQPESKC
FT                 YSPMEKQCEDHFLQNVQKAQDSRLIVKLPFLEHTSALGESRDIATRRFLSL
FT                 EKRLQKDQEIKKGYIEFMKEYEALGHMKEVPQIHLPKSHYFIPHHCVLKPD
FT                 SQTTKLRVVFDASAVTSSGKSLNDLMHKGPTVQNSLMSILLRFRMHKYVFT
FT                 ADIEKMYRQIWINPNDQQYQMIVWRNDPSERLKFYRLKTVTYGTKSAPYLA
FT                 TKCLEYLASKEMQKYPIGSSALKNDFYVDDCITGADTIPEALQIQKELNHI
FT                 LLSSGFKLRKWCANSNHLLQGLDKEDIIPTVQFEDAAYEDCSIKTLGITWN
FT                 PAIDKLCGKTQTVTTDKITRRDVVSEIFKIFDPLGLFSPVVIKAKIFMQGL
FT                 TKEKFEYNEELPTQLQSEWKQFREDLKMLNDIKIPRHVFDGKIPVSKEIHT
FT                 FVDASENAYAAAIYLRAVHKDKRVTVQLLCAKSRLAPVNAITLPRLELKAA
FT                 VLGAQLTATIKEXLSLQGTATYFWADSEIVLSWINSPKTIKDKFVATRITT
FT                 IQEASLQREWRHVPSENNAADIASRGISGSKFNNFSLWFYGPLFLYGPSSK
FT                 WPLPFVAAKSERCALPQDNPEILVATTQCPNWLYGINHGNSFDKLLRIVAY
FT                 IMRFKGKSTDATTMVTFEELENSRKIVLRLIQHNNFSAEIKELKKSREVGR
FT                 GSNLSALTPFLDQDDLIRVGGRLEASELSFDAKHPVLLPYNDPIVKLIFEK
FT                 IHKENMHCGAQTLIATSRQRYWAIKAKTIARNVILKCVKCTRAKPKLMEQI
FT                 MGQLPPLRVTQARPFLNSGVDYCGPFKIHYKIRGKKPHTAYIAIFCCFATK
FT                 AVHLELVSDLTTEAFLAALRRFISRRGKCQTLHCDNATNFVGARNKLQELE
FT                 EAIFSEKAKRSIMETCNNKGVNFKFIPPRAPHFGGLWEAAVKSAKHLLLKN
FT                 VSTADLTYEELETVIVEIEAIMNSRPLVPISSDPNDVTALTPGHFLIGEPL
FT                 TAQADSEPSQQPQSLGQRWQAVSKLKHMFWTQWSTDYLQQLQHRQKWRRSS
FT                 ANVKEGALVLIKEDNTPVLQWPLARIIKTIHGKDNFVRVVEVKTSKGVILT
FT                 RDIQHIAPLFSEEESVHKHPAALEEDENTPDERQAKRPKKSAMPSLTMALI
FT                 VMLLLLPLVAAQSINVTQFASKPGIFFERIGKSQLAKTDWTLIVYYNLRPY
FT                 WKDMSTFSMGTTKIGHLCKQFSETEACASMYQHFKHIEEDLQAENMLITKS
FT                 RQQRAPLDIVGNIASSLFGVLDSTYADKMVQTITKVKANEKHLLTLLRNQT
FT                 SLIDSTINVIKRDEISNSKRLKSIENYIAETTGTESRFNKFSWYITLATQL
FT                 SLLASSLQRMQTEIINVLTDIRHNTISPMLLSPRQLKDQLDQIRNHLKPGQ
FT                 MLPVSPDNILMAYQMMKAEGTIIKEHVIIKVNFPLVSTQILDIYRLTPIPL
FT                 LAEDGISMFEIKTPYIAINSHRDEFFEMSEIDLKACQERAKDDFICYNKQE
FT                 MFSSETSCEMQMFHNKTDSSCKLIKAEKPLVWLRTHAKNHWIFTTRSTLTL
FT                 SAVCLDGTSNINLRGSGLMVAKPGCTIRNSLMTITSQDILETTLHTSYARF
FT                 GEGELTQNLRFNSTRSASTSLMEDSNLNYKELYQREAQLLPSNSFKLPHNL
FT                 ETIEHHHIAIYIALVFIIIILIIHFMKQWRKPRNTLQLNQLPTTTPVNRDG
FT                 SSIQPFTININDC"
XX
SQ   Sequence 7644 BP; 2697 A; 1457 C; 1475 G; 2014 T; 1 other;
     tttggtgacc cccgactttg aaccgcaaca attgttcaaa ttgggactcc aatttgaacc        60
     agcatcatcg atcatagttt gatcaaccca aggtctattt ggtaaaaatt tgaaccgcat       120
     atatcggtca attataatat ccatttgatc tgacttcacg acgttaagta cagtcttcaa       180
     cggtcaacaa ggcgaccaaa agacggtaaa ttcaactact tcaggtgtgc gatcaacttg       240
     gcgatcaaac actgtaagga tttacattga aaggttctga tcaaccaggc gatttgaacc       300
     agataaactg ctgtttcact gatcgatctg ttcaaagcca atttacatat atatatccaa       360
     cggtgtgagt cgaggcacat cattacaaaa tacctcttaa gtggattata taaaaaaaaa       420
     aaggtaaaaa tggcaccgaa cagcattcat cagttgttga caggacagtt atcgatagga       480
     gagcaaattc agaatgtcat tcggaattat aaaaaggatt ccgtcgacag aaagactaag       540
     ccagcctact acagagaacg tttattaacg ttagaatccc tgtgggataa attcaactcc       600
     ggagataatc aaataaatat tttcctcaaa ggagtaacgt tagagcacga ttattttaac       660
     aatgaattct ttaataaaat taagcaactg gttgaggact ataagacaga attcaacaat       720
     cagttgtctc tcttggaagc ggatgttaca tccatcgcat ccacagcaga ggacatcgaa       780
     atagaatcga tgttcagaga acaaagggtg ttgcttgatt gtttagagcg catcataaat       840
     aaaatgaccg aagaaacgaa acagaatttc tcgaccgtca taacacaata ctggaatgaa       900
     ataaaagata ttcatgtcca aatttataaa aaatttaagg accctaagga acttggatat       960
     gacgacagca gatatatggc agctgaagat gcagtcataa aaatacaaac agaaatgtat      1020
     gtaaaaaagg agacaacaaa tagttctcca acaaatgctg ttcaaaatgc attacatttc      1080
     ccaaaggtag ccatacccaa atttgatggg gattatttaa aatggcaaca gtttcatgat      1140
     attttcaaaa aaatgattca tgaatcaacg ttacccacta tacaaaaaat gtggtacttg      1200
     aagactaacg ttaatggaga ggccgaacgc ctaattcgcc atttatcact aaccgaggca      1260
     aattattcaa ctgcatggaa aacacttgaa gaacgcttca acaatagaag agtattaagt      1320
     aatactttaa ttcaaaaatt attggatcat tcaatgatta caaatgattc gaaaacaatt      1380
     aaatcgttgc atgataatgt gaaggaaaca ttatctgctc tcaataacat tgggatagag      1440
     acagacaaat gggatccact tctactctgt cttctaacga aaaagcttga tcgacccaac      1500
     cacttgttat atgagcaatc cgttcaaaat acaaggcaaa ttcaaccttt gaacgaattt      1560
     ttaagctttc ttgaacagag gtttctcact cttgaagcca ttggatcaga aaaaggaaaa      1620
     aagcaaaata catgtgcatc agttggagct gaaacacaat ataactgttt cttttgtaag      1680
     aaaccaaatc acagcatata taaatgcaac gaatttttaa agaaaacccc agcagaacgt      1740
     cttaactggg ttcaaaaaca aaaattatgt gttaaatgtc taagccaaaa tcacccgtca      1800
     aagacatgca caaagagaga ttgctttaaa tgcaacaaaa agcacaatac attgttgcac      1860
     ttggaaacaa aacctgaatt ttcggatagc atcacagccg catctgcaag tggaaagcaa      1920
     tccagttata ttcttctggc gaccgcccgt gtaattattc aaggagtaaa tggacaaaag      1980
     gcagaattca gagccctgct tgactctgga tcccaaatta atgccatttc cgaaagagca      2040
     attaaaatgc tctcattgaa aactacaaat tcgatgctga aaataaatgg cattggtgga      2100
     aaatgtcaga cttccaatgc aaggatcaat gttcagctaa agtcaaaaca aggcgatttt      2160
     agttcacggc ttgaagcaat ggttttgcct cacatagtcg ctgatcaacc aacgtataca      2220
     atttcgactg ataattggaa aataccaaaa aatataatgt tggctgaccc tcaatttgga      2280
     aagcctggaa aaattgatat tcttcttgga gccgagcatt attacaatat aatgcaaccc      2340
     gagtgcatga gtataaagaa tggactcccc aagctacaga ataccaaact tggatggatt      2400
     gtagccggga aaatttcgga gagagcacct acatcatcag tatgtgctgt acttacggaa      2460
     ggagaaaaag ttgatgagca actcgctaaa ttctgggaat tggataattt tcaaccagag      2520
     tcaaaatgct attcaccaat ggagaaacag tgtgaagatc acttccttca gaacgttcag      2580
     aaggctcagg actcgagact tattgttaag ttaccctttt tggagcatac ttcagcgctg      2640
     ggggagagtc gtgacattgc cacgagacgg tttctatcgt tggagaaacg actgcaaaaa      2700
     gatcaggaaa taaaaaaagg atacatagag ttcatgaagg agtatgaagc tcttgggcac      2760
     atgaaggaag taccccaaat acatcttcca aagtcccatt actttatacc gcatcattgc      2820
     gttctcaaac ccgacagtca gacaactaaa ttaagagttg tttttgacgc atcagcagtg      2880
     acatcttccg ggaaatcatt gaacgattta atgcacaaag gtcctacagt gcaaaacagt      2940
     ttaatgtcaa tactgcttcg atttagaatg cataaatatg tattcactgc tgacattgaa      3000
     aaaatgtaca ggcagatttg gataaatcca aatgatcaac aatatcaaat gatcgtctgg      3060
     agaaatgatc cgtcagaaag gcttaagttt tatcggttga aaaccgtcac ttatggcaca      3120
     aagtctgcac catatctggc gacgaaatgc ttggagtatt tagcaagcaa ggaaatgcag      3180
     aaatatccta taggatcgtc tgctcttaaa aatgattttt atgtcgacga ttgtatcacc      3240
     ggagctgata caataccaga ggcacttcaa attcaaaagg aacttaatca cattctatta      3300
     agttccggat ttaaattaag aaaatggtgc gcaaatagta accatcttct tcaaggattg      3360
     gataaggaag atatcattcc cacagtacaa tttgaagatg ctgcctatga ggactgcagc      3420
     attaaaacct tgggaatcac ttggaatcct gcgattgaca aactctgtgg aaaaacacaa      3480
     actgtgacca cagacaaaat aacaagacgg gatgtggttt cagaaatatt caaaatattt      3540
     gatcctcttg gactattttc tccagtagtc ataaaagcca aaatattcat gcaaggctta      3600
     acaaaggaga aatttgaata taacgaagaa ttgccaacac agttacaatc ggaatggaag      3660
     caattccggg aagacttaaa aatgttgaat gacattaaaa ttcctcgtca tgtctttgat      3720
     ggaaaaattc ctgtgtcgaa ggagatacac acgttcgtcg acgcttcaga aaatgcgtat      3780
     gctgcagcca tatatcttcg tgcagttcac aaggataaac gagtgactgt acagttatta      3840
     tgtgcaaaat cgcgtttggc ccctgtaaat gcgatcacgc tcccgagact ggaattaaag      3900
     gcagcagtat taggtgctca attaacagcg accataaaag aagawttgtc gctgcaaggg      3960
     actgcaacat atttttgggc agattccgaa attgtgttat cctggataaa tagcccaaaa      4020
     acaatcaagg acaaatttgt ggctactaga attaccacca ttcaagaagc atcgttgcaa      4080
     agggaatggc gccatgttcc atcggaaaac aacgctgcag acatagcgtc aagaggaata      4140
     agtggttcca agttcaacaa tttcagtctt tggttttatg gtccactgtt tttgtatggt      4200
     ccatcatcca aatggccatt accatttgtt gcggcaaaat cagaacgctg tgcacttccc      4260
     caggataacc cagaaatctt ggtagctacc acgcaatgtc caaattggct ttatggtata      4320
     aaccatggga attccttcga taagttacta agaatagtag cctacatcat gcgcttcaaa      4380
     gggaaatcta cagatgcaac tacaatggtg acatttgaag aattggaaaa ttctcggaag      4440
     atagttctcc ggctaattca gcacaataat tttagtgctg aaatcaaaga gctaaagaaa      4500
     tcccgggaag tcggacgagg cagtaatctc agcgccctaa cgcctttctt ggatcaggat      4560
     gatctcattc gagttggagg cagattggaa gcatctgaac tttcattcga tgcaaaacat      4620
     cctgtactat tgccatataa tgatccaata gtcaaattaa tatttgaaaa aatccacaag      4680
     gaaaatatgc attgtggtgc ccaaactcta atagccacat caaggcagag atattgggca      4740
     attaaagcaa aaacaatagc tcgaaatgtt attttaaaat gtgtcaaatg caccagagct      4800
     aaaccaaagt taatggaaca aataatggga cagttaccac ctttaagagt cacacaagct      4860
     cgtccgtttc ttaattctgg agttgattat tgtggaccat ttaagattca ctataaaatt      4920
     cgtggaaaga aaccacatac tgcttacata gcaatctttt gttgctttgc gaccaaggca      4980
     gtgcatttag aattagtcag tgatttaacg acagaagcat ttttggcagc acttcgtcga      5040
     ttcataagtc gtcgaggaaa atgtcagact ctacactgcg acaacgctac gaattttgtt      5100
     ggagcaagaa ataagcttca ggaattggaa gaagctatct tctcagaaaa ggccaagagg      5160
     tctataatgg agacctgcaa taataaaggc gtcaacttca agtttatccc accaagagca      5220
     ccgcattttg gaggactttg ggaagcggcg gtaaaatcgg caaaacattt attgttaaaa      5280
     aatgtttcta cagcggatct gacctatgag gaattagaaa ctgtgatagt ggaaatagaa      5340
     gctatcatga attcaagacc cttggttcca atatcgagcg atccaaatga tgtgacggca      5400
     cttactccag gtcactttct aattggagaa ccattaaccg cgcaagcaga tagtgagcca      5460
     tctcagcaac cacaatcatt gggacagaga tggcaagccg tatccaagtt aaagcatatg      5520
     ttttggactc aatggtcaac tgattatctg caacaacttc agcatcgtca aaaatggaga      5580
     agatcctcag caaacgtaaa ggaaggagca ttagtgctga tcaaggaaga caatactcca      5640
     gttctgcaat ggccattggc acgaataatt aaaacaattc atggcaagga taattttgtc      5700
     agagtcgtag aagtcaaaac gagtaaagga gtaatactta cacgagatat tcaacatatc      5760
     gccccactat tttcagagga ggaatctgtt cataagcatc cagctgcctt agaggaagat      5820
     gagaatacac ctgatgagag gcaggcgaaa aggccgaaga aatcagcaat gccatcgctg      5880
     acaatggcgt taatagttat gcttcttcta ttacctttag tagcagcaca atcaattaac      5940
     gttactcaat ttgcatcgaa accaggaata ttcttcgaaa ggattggaaa gagtcaacta      6000
     gcgaaaacgg attggacttt aattgtctat tataatttgc gaccttactg gaaggatatg      6060
     agtacctttt cgatgggtac aacaaaaatt ggacacttgt gcaagcagtt ttcagaaaca      6120
     gaggcatgtg caagcatgta tcaacacttt aaacacatcg aggaggatct tcaagcggaa      6180
     aatatgctta taacaaaatc acgtcagcaa agagcgccgt tggatatcgt tggaaatatt      6240
     gccagtagtc ttttcggcgt attagactcc acttatgctg ataaaatggt gcaaacgata      6300
     acaaaggtta aggcgaatga gaagcatttg cttactttgc taagaaatca aacatctttg      6360
     attgactcta caattaatgt cattaaaagg gatgagatct cgaattccaa acggttaaaa      6420
     tcgatagaga attatattgc agaaacaact ggtactgaaa gtagatttaa taaattttca      6480
     tggtacataa cacttgcaac tcaactctct ctgttagcct ccagtttgca aagaatgcaa      6540
     accgaaatca taaacgtttt aactgatatt cggcataaca caataagtcc gatgttgctg      6600
     tcaccaaggc aattaaagga tcagttagat cagatacgaa accacttaaa gcctggacag      6660
     atgcttccag tttctcctga taatatatta atggcatatc agatgatgaa ggctgaggga      6720
     accatcataa aagagcatgt tatcatcaag gtaaactttc cattggtatc tactcagatc      6780
     ttggatatct acagattgac accaattcca ttactagccg aagatggaat cagtatgttt      6840
     gaaattaaaa ccccatacat cgcaatcaac agtcatcggg atgaattctt tgaaatgtca      6900
     gagattgatt taaaggcttg tcaagagaga gcaaaagatg attttatatg ctacaacaaa      6960
     caagaaatgt tctcttcaga aactagctgt gagatgcaga tgtttcataa taaaacagat      7020
     tcttcttgca aattaataaa ggcagaaaaa ccgttagtct ggctaagaac acatgccaaa      7080
     aatcactgga tctttacaac aagatccacg ctaacattat ctgcagtttg tttggacgga      7140
     acctccaata taaatttaag aggttcagga ttaatggttg ccaaacctgg atgcaccatt      7200
     cgaaattcct taatgacaat tacaagtcaa gacatattgg aaaccacatt acatacatcg      7260
     tatgctcgct ttggagaagg agaactcaca cagaatttac gatttaattc aacaagatct      7320
     gcctctacaa gtttgatgga agactcaaac cttaactaca aggagttgta tcaacgagaa      7380
     gctcaactcc tgccttccaa tagttttaaa ttaccacata atcttgagac tattgaacat      7440
     catcatattg cgatctatat tgcattagtt tttataataa tcattcttat aattcatttt      7500
     atgaagcaat ggcgaaaacc tcgaaatacc cttcagctga atcaactgcc gacgaccaca      7560
     cctgtaaata gagacggctc ctcgatccag ccttttacaa tcaacattaa cgattgttga      7620
     acatcagttc aacggccggg agta                                             7644
//
ID   BEL-71_DTa-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.10, Created)
DT   07-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-71_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-485
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5691-5691 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identity to consensus. 5-bp TSDs. The consensus is ~97%
CC   identical to that of BEL-18_DSuz-LTR from Drosophila suzukii.
XX
SQ   Sequence 485 BP; 148 A; 108 C; 81 G; 148 T; 0 other;
     tgtacgattt cgactaagca gaaattcgtt cgttgctgat agctaatttg acctaaataa        60
     atagattgct gatatcttgg tctgcgcaca tctgcatgtg ataaacgggt cataaaccat       120
     atgcatccag ccgacggacg tgtcttcaca ccatttgtca taacccttgg gaaattctaa       180
     cccgaccatt tggtagatgt aattgcttat ttaggctatt ttcttgtaaa ctgataataa       240
     accatgttgt ccatttgtat ctaacctaga cctaagtaaa tatccttgta accccaaatc       300
     atgtatataa acccggatcc atgctcaata aaatcagtac gaaaagaaat cttgacgtat       360
     tcacttctcc gcagcccaat ttgttctgta cttattgcgg cgacttttgc cactggttct       420
     gtacttgagg cacgcaaaaa aaaaaaaccc ttttcagcaa acccgatttc ggtagaaatc       480
     ataca                                                                   485
//
ID   BEL-720_AA-I repbase;    DNA;    INV; 6893 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-720_;
KW   BEL-720_AA-I; BEL-720_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6893
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6893
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 369-369 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6893 BP; 1808 A; 1721 C; 1685 G; 1673 T; 6 other;
     taatttatgg tccttcgaac cggattcgat cgaagcgacg aacaaaagtg cggtgatacg        60
     gtggtgattg ttctgcacgg cgtggattcg ccattgttcg gatcgccatt gtacagatcg       120
     ttattgtacg gcggttattg ttcatctggt ttgctgcatc ggtggctgtg aacacgtggt       180
     ttggctgatt gttggagata catcaccggc ggcagatcca gggcggattc tgttgcgact       240
     atcatcgagc gacgcatttg gaattgagct aagtacttag tcataaggag atagtcgaag       300
     gtggcgttaa gaacgcacgc ttttacgctg accagttgcg tacgctggaa atcgcggtta       360
     ataaaacatt attgcatgat tgcgtttcat tcggtctggg ggttgaattg gttgatgcaa       420
     taagtacacc aataaggttg gttgggtttt tcgggttgaa tttcccctga tattctgtca       480
     ctctgtgggt tctgtcaagc gcgaaaacgt tcgatatcgc ggcgcgttcg gattgtattg       540
     tgtagtgcta agtgcagtga tcaagatggc gaattccgac ctgagaaagc tgacgaagaa       600
     ggagcgccaa ctgcgagaca tggttgaatc cattgaggag tttgttagcc actatcagga       660
     ggcgcgcgac aagggctcgg tttctgcgcg gatcaaaaaa ctagatgaag tttacgactc       720
     attttgtgac gtgcgagccg acattgaaat ccaactcgaa gaatgcgaca ccgacgaaga       780
     ggatgtacga gatgttccgg ctgaaattcg cgagcagacc atggcggcta gaatgaagca       840
     acgtagcgaa caaaactcca aagttttgaa ggcattcatc caacgatact tccgactgaa       900
     gcaatcgctt gaatctttca tgcacggtcc cggttcaagc agtcaactga ttccagcacc       960
     agttaatgcc acaccagcag cgatgtctcc tatgcgtgta aagccaccag agttgaagat      1020
     tccgacattt cggggatctc tcatggagtg ggtcactttt agggacacat tcaaaaccct      1080
     aattgtcgac aacccacatt tgaccgatat tgatcggttc acttaccttc gcacttcgtt      1140
     ggcaggagaa gcgctgcagc aaattgcgtc gattgatctc actgcggaca actactccgt      1200
     agcgtggcgt tcattggagt cacgatacga gaacaaaaag ctcctggtta aaacccacat      1260
     tgacgccctg ttcgcagtca atccgatgaa gaaggaatcc ttcgaagcat taaatcacgt      1320
     catcggagag tttgaaaaac acctccaaat gctggcgaag ctaggcgaga ataccagcga      1380
     ttggagtacg cttctggcgc atatgctggc cagcaagcta gataccacaa cacttcgctt      1440
     gtgggaaacg gaacatcgtt caacagatgt tcctaagtac gatgacatgt tacatttcct      1500
     atcgaatcat aggacagttt tgcgctccat ctcaggtgag acacacgcac cagtggagcc      1560
     aaagaaacag ccgaaatata gcaacagtta ttcggttcag cagcagtcgt gttccttttg      1620
     cggtgatgga caacattggg cgtatcaatg caagcacttc aagggaatga gagtcgacga      1680
     gcggaggagt gctgtgaaaa gcaacgattt gtgcttcaac tgtctcggtc gtggtcacac      1740
     ttccaagttt tgttcgcgag gtgcatgtcg tatttgtggt caacggcatc actcattgct      1800
     gcacatcaat aacactagtg agcagcaagc accacaatcg aacaagcgct cgcaacaaca      1860
     gtcacagaac ccacaattga gtcagacaag ttcaacttca caacagaaaa agtcaacaca      1920
     aaccaatcct cagcaacctc cctaccaatc ttccaaaacc cccattcctg ttgctactcc      1980
     aagcatgata aatcaaacgc cacctacctc agatactcct aatattgtac tcactgctca      2040
     agacaccaag gtgtcacgat cggttctgct agcaactgcg atcgtgatcc ttgaagattc      2100
     ttttggaaac actatgcaag ctagagcact acttgacagt ggctctcagc tttgcttcat      2160
     ttctgaacat gcatcgcagc gtttgaaatt caagcgctcc cgtgaaacac tttcaattag      2220
     tggcatcgga caagccgcta agaagtgcaa acagtccatc ttcgctaggg ttcgctctcg      2280
     tatttcgtcg ttcactgggg aggaggtatt ctacgtgctt ccacaagtta cgttgaacct      2340
     tcccattcgg aagattgact ccaccagtct tcagctcccg gaagacatcg cactcgccga      2400
     tccactcttc acggaacccg gcggagtgga tgttatcatc ggagcaggat tattcttcga      2460
     cctgcttctt aaggagaagt tcaagctagg agatgatgga cccatcgtgc aaaatacgtc      2520
     gctaggctgg attgtatgcg gaaaccttcc tgccgagtcg gacgtgctca ggccacaagt      2580
     tgccaacacg tgtaccgaaa ggttggatga tttactcacg cgattctggg agctsgagtc      2640
     gtgcaagacg amcagtgtgc tgtcactgga agaatatgcc tgcgaaaaac tcttcgatcg      2700
     cacaacagtg cgcgacgaaa gtgggcggtt catcgttaca cttcccaaga aggacttctt      2760
     gatccgccaa ctcggggact ccagatccac mgcaatgcga cgcttcttat cgctagaacg      2820
     tcgattggac cagaatcccc aactgaagca gatgtacagt gaatttattc acgaatatct      2880
     cckcatggga cacatggagg aggtaattgg ggatgaagaa gatgctgcct tgccacaata      2940
     cttcattccg catcactgcg tcatcaagcc cgacagcaca agcacaaagc ttcgggtggt      3000
     gttcgatgca tcgtgtgcta cgtccaccgg agtctccctc aacaatgcgt tgatggtggg      3060
     gccaacggtt caagatgata tcatctctat cgttcttcgt ttccgattcc atcggattgc      3120
     catcgttgcg gacgccgaaa aaatgtaccg tatggttctg caacagtggg cggaccgcaa      3180
     actccacaag atcttttggc gagataatcg gaacgaggat atccgagtat tccagttgaa      3240
     cactgtgaca tacgggacgg catcagcgcc gtatttggct actaaatccc tcaagcggct      3300
     cgcagagctg gatggtcaca aattccctga agcggcaatc gtcctcagca aagactttta      3360
     tgttgacgac atgatgactg gcgttgacag cgtggatgaa ggagttaagc tttgctgcga      3420
     catgcagcag ctgctgaagg gtggaggatt caacctacga aagtggagca gcaactgttc      3480
     tgctgttttg gagaagatac ccgcagagct caaagatgac cgcacctctt tcgagctcga      3540
     tgactcaacc gctactataa aaactcttgg actcatctgg gagcctagga cagacgtctt      3600
     tcgcttcaag gtaccagagt ggacgtcttc ggaagtctgc aaacgttcgg ttatttctga      3660
     cctagccaga atcttcgatc ccatcgggct aatcggagtc gtgatcattt ctgccaaaat      3720
     attcgtccag accctctgga aacaaaaagt tagttgggat gaaccattgg aagatgatct      3780
     acgagtacag tggatcgagt ttcggaccag cttgtctagg ctcgaaaacc tgcagattcc      3840
     gagatggatc gcattccgga aagattgtct ctcgttggag ctccacggtt tttgtgatgc      3900
     ttcaacaaag gcctatgggg cttgcatata cgtccgatgt acacacttcg acgggacaat      3960
     tacttccaac ttgctagtag ctaaatcacg agtcgcacca ctcgcagagc taggaaagaa      4020
     gagaaaacag ctcacaattc ctagactgga gttgtcgtcc gctgttttgc ttgcacacct      4080
     atacgagaaa acctccgcaa gtatctcaat gtctgctcag tcatacttcc acaccgattc      4140
     tatgattgtg agatattgkc tgtcttcaaa tccatcacga taccaaatgt tcgtagcgaa      4200
     caggatctct gaagtgcagc atctaacgaa aaatggaact tggagacacg tagccggcac      4260
     cgagaacccc gcggatgctt tgtctcgcgg tgtttcgcca gctgatctcc agcagaactc      4320
     tctgtggtgg gaaggtccaa gctggctgcg acaggagaag aaatgttggc cggaagcaca      4380
     agaagttgta ctggaggagc tcgatcgttc gcatttggaa gagggttcca cagtagcttc      4440
     tgtagcaaca atctcgccgc caagtgaagt ttttggcctt cgttccacgc tacaccggct      4500
     agaaaaactg gtcgcaatgc tgctgcgatt caagcacaat gctctccgta gtccagtgaa      4560
     gaaatatggc ccgatttcac tcgcagagcg agagaacgct ctaatgcatc tagtgaagct      4620
     ttcgcagcag gaatgctttg ctcaggaaat cgctgatcta gaacggcatg gagaagtaaa      4680
     acaaacatct cgaatcagat cacttcatcc aagattggtt gaaggtgtac tccgggttgg      4740
     cggccggcta gaaaacgctc aggtttcacc ggaccgaaag catcccatgc tgttggataa      4800
     gcaccatcct ctaacgttca tgattatgcg tcgttttcac tttgaacatc ttcacgctgg      4860
     accacaactg ttggtwgcca gtgtccgtga acgtttctgg ccactcagcg cgcgcagtct      4920
     cgcaaggacg attgtgcacc aatgcatcac ctgcttccgg aacaagccaa cggttcaaga      4980
     ccagttgatg gccgatcttc cggcagaacg ggttacccca gcgccaccat ttctacgagt      5040
     tggcgttgac tattgcggac ctttcatgat taattatccc aatcggaaga gaatcaccgt      5100
     caaacactac gccgcaatct tcgtttgctt agtgactaaa gcagtccata ttgaaatggt      5160
     tgctgacctt accacccaag gcttcttggc agcactgaaa aggttcgtgg ccagacgtgg      5220
     gaaaccagct ctcattatgt gcgataacgg ttccaatttc attggagcac ggcggcaact      5280
     ggacgagctt gcaactctgt tcagagatca acaagctcag cattccatcg ctactggcgc      5340
     ggcggacgat ggaatagatt tcaaatttat tcctgctaaa tccccaaact tcggtggttt      5400
     gtgggaggcg gcggttaaat ccatgaagca gcacttgaga aaggtgattg gactgcgaac      5460
     ggttactcca gatgagctga acactgttct ggctcaaata gaagcgtgtc ttaactctag      5520
     gccgcttaca cagctcagca gcgatccgag cgatctaggt gtactaacac ctggccactt      5580
     tcttgttcat cggccgctga cagcagtggc agagccgtgg ctgcaagata ttgctgagaa      5640
     tcgactgtcc agatggcaaa gagctgaaga tttcgttcaa cgcgtgtggt ccagatggtc      5700
     cacgcagtac ttgtccgacc tacacaacag gactaaatgg acccgcaaga ggaacaacct      5760
     tttcgttggc acaatggtgc tgatcaagga ggataatctg cctcctctaa aatggctcct      5820
     cggaagggtg acgcatatcc atccgggagc agatgggaac atcagggtgg taactgtccg      5880
     gaccaaggac ggagatgtga ttcgtgctat ctctaagata tgcattctgc ccatcagcga      5940
     caacgagcaa gtttcaacgg ctgaggaggt ttaagccttc tccaacgatg gcgcaggagc      6000
     gcctgcggga gtcaaccgac tcccgcgcac cagttaagtc tttgtgtttt atagaaattc      6060
     aaaaaagctt aaggaatgtt ttgtatacgt agccaacccc tccgacggcc ggcggccgat      6120
     cagcgaagcc acccacgaag taagccattt gtcaactata attgccctct ttccgacgtc      6180
     tatgatgccc agatgaccag gttgccagcg tccaagctca gcagctctca accggtgata      6240
     accggatcgg tcccgtgatt gacacagctc aagtcacagg atcaggcacc ttcggtgcct      6300
     atgttcgttc gaattccaag tttcttcaag tatggcctcc agtctgcagg caactcacgc      6360
     ttgtcgcgct tcaagcaacc attcgtcgtc atcactcagc tcgaaacccg gaaatccaaa      6420
     acctatcaaa taccgttcaa cctggcgaac gcatcgtcat cggcgcagga gcgcccgcgg      6480
     aggcgcgcaa gcctccgcga cagggaagtc gtttgtgcat tgttttagac ttgtaaaaaa      6540
     tcgcctctca tcttttccag tcgtttattt tgttctgcgc tggcgcgccc agccgaagca      6600
     atccgatgtc accaattccg tccatccgta gccaacgatc ttaagatggc caacacggaa      6660
     gccgagaacc caggtgccat atatgcccat cgatgtccag aagaataccc ccttagcgaa      6720
     gattatgacg tttcgctaga caccagttac gttaccagca tacctacaat aactacaact      6780
     aatttttctg ttttcataac actcttttga acatattgta tccatcagaa ctctagtttg      6840
     tagaatagta gataagattg tttgaaatac cgcgtattcc aaggcggccg gta             6893
//
ID   BEL-720_AA-LTR repbase;    DNA;    INV; 419 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-720_AA-I;
KW   BEL-720_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-419
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-419
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 375-375 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 419 BP; 112 A; 92 C; 101 G; 114 T; 0 other;
     tgtaaaatat tgtatagttt aggccatgat ttaccccact ctgcaacgat catcagcttc        60
     actgatgttc gcgagatggt cactcattct cgcagcatcc atccagcaga gatggatagc       120
     agatcactca tcctatctct ccggttaccc ggggatagga gaaagtaggt atatgaccag       180
     tacgatatag ataggtcagg agtctcattt cagtgcgcga gtaaaccagt cgtctcaata       240
     aacgctctag ctttttgttc agtagttacc ggtgttcaac tgtatagtgg aagaagtttc       300
     ccatcggtgt gccattagtt cattccggat agtcccggag tcgcgaattg ggaatagacc       360
     aattgagaac ggtcgtttca atcgtagttg accagtgcgc taaggtcgaa gacggaaca        419
//
ID   BEL-721_AA-I repbase;    DNA;    INV; 6119 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-721_;
KW   BEL-721_AA-I; BEL-721_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6119
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6119
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           605..6091
FT                 /product="BEL-721_AA-I_1p"
FT                 /translation="MLLRSAGAKKSLFAVSPATASLTAKVVHTPTLTVKEQ
FT                 KEQQLIREADAKMAATIDALVQCCLSTKGKIDRIRQAIQLADHDYGKFNIH
FT                 ALELYLKTVDTAYTEYNDFQNRIYMADPSKREEYEPQFIDFEELYEFVRIS
FT                 LCEMLSKYEKDQQANDAAFAVDAQQKLQALKLSSIEPSSSSAVNVPSRIPS
FT                 LLLQNTPLPTFDGRYENWFKFKSMFCDIVDKCVADSPATKLHYLDKALVGK
FT                 AQGAIDQQTINDNNYQGAWKILTERFENLPMVLHGHVMKLLNLKQMSKESS
FT                 HELKTLIDDCEMRVGSLEFHKLKMDGMSEVIVITLLTTKLDPETRKCWEST
FT                 IEHGQMPTYKDTIAFLRKRSYVLERCEQMSVALKTRAVSEKSKNPVMTSKT
FT                 HSVVVQKPDDTCPVCELSHAVEKCDAFKKLNVDGRYNKAKQIGLCFSCLKK
FT                 GHRTANCRMNLACASCSKKHHSLMHPEERKIVSPNPSQAPANKEETRSTGP
FT                 PLTAAKCVIPKQPREPSKQVLLATAMVGVIDACGVAHQCRALLDSGAMANF
FT                 LSERVADLLCLPKRSIDIPVVGVNGMKSKVKFRIQAAVESMVNDVQFTLDY
FT                 LIVPRVTSTLPAKRIDVSSWPIPNDLQLADSKFNEPSRIDMLIGAEVFYDL
FT                 LQAGRIRMSRDLPMLQESVLGWLVAGSVVEEEPVSTVRVCQISSVTEPEDN
FT                 LQELLKRFWTIEEQVFDVESTPSDDDCETHFAETHARNMEGRYVVKLPFRD
FT                 NVNDLGESRMQAEKRFMMLERRLIKNPEIKQMYDAFIDEYLALGHGVEIDS
FT                 SDKNDSEFVYYLPHHCVVKPDSSSTKLRVVFDASAKSESGLSLNDVMKVGP
FT                 TVQSSLFDIILRFRTFKYTFSADVPKMYRQILVHEQDRKFQRILFRKCEYE
FT                 PLREIELKTVTYGTAAAPFLATRSLNQLADDESEHFPAASASVKKSFYIDD
FT                 VLTGANSLEEAIALQRDLIALLSKGGFGLHKWCANHPKLLDEIPLAAQERQ
FT                 MHFDDCDANGVIKTLGLYWNPDDDQFMFRVSPMNECLMKPTKRQVLSETAR
FT                 IFDPLGLLAPAVVISKLLMQHLWRDKQDWDEQIPNEYLKMWNRFRTELSEI
FT                 GSEKIDRRVTIDQAVRIELHGFADASGTAYGCCVYMRSVREDGAVDMKLIC
FT                 GKSRVAPTKELQRNVNPEAKPAEMTIPRLELCAALLLARQMKAVSEALDMQ
FT                 PNQVILWSDSSIVLCWLNRVKPETSVFVRNRVTKIHQLQPEATWKHVSSKS
FT                 NPADVVSRGLFPKELMINDLWWNGPRFLRLNEFHEEAPDAELEDGAEKEED
FT                 CDIVMTVTVLDNRPYEVILASSNFRRLQRVFGYVGRFIFNCKTKNFSEKRF
FT                 NRRLTFDELDNGLKLMVKCVQHEVYAEELKCIVKNKPIKGKLRNLNPVLDD
FT                 NMLRVGGRIRHSDLPKDQKHPYILPEKNHFTEILIETIHREHLHLGLNGLL
FT                 AAVRAKFWPVNAKRTIHRVLRKCVTCFRMKPKVIEQYMGDLPSARVTAAHS
FT                 FSRSGVDYAGPFLLKQGRGRHPIKAYVCLFVCMSTKAIHLELVTSLTTDGF
FT                 IATLHRFVGRRGNVSDLYSDNGTNFTGASKELIDLKNLLKSQALQQRVNEF
FT                 CQQRGTNWHFIAPRAPHQGGLWESNVKSMKNHLFKSLSESYLTYEEMNTLL
FT                 IQIEAILNSRPLVPMTDDPFDYEALSPGHFLIGRELTSIAEPNYEHLKDGT
FT                 LSRYQLIQKRKQSFWNRWSNEYITTLQKRSKWFKEPVLLRSGLLVILQEDN
FT                 MPPQSWRLGRIIDTHPGKDGITRVVTVRTSNGTYRRATTKIAVLPIDDNVG
FT                 LTTVKAD"
XX
SQ   Sequence 6119 BP; 1792 A; 1224 C; 1520 G; 1583 T; 0 other;
     ttttggtcca tgtcgatccg gatatcgatt tagtgttgaa gaatcgcgtt actgctcccg        60
     gttcgtgcgc ggaacgggaa gaaaattgat tttcggtgtt cgcgaccacc ggaaaagatt       120
     gtcctgagtg acaaagtgat ttgatcgcat cacgaggtgt tgcgaaataa gtgaatccgg       180
     agggcatagc ccggatagaa gatccggtta tcggagaaga ttgtccttag tgacaaagtg       240
     attgatcgca tcacgaagtg ttgcgaaata agtgaatgcg tgaatccggg gatagcccgg       300
     atagaatatc ctattgccga cgaagcttgc tcaagtagca aaagttattt tgatcgttgc       360
     tcgtagtgtg gcgaaaaaag tgaatcccgg aagctgtgat tccggtcgaa taatctgttt       420
     ccggaagatt gccgtgaccg gcgttggaaa agaaaacggc ggccatattg acgagtgatt       480
     gcaaatatta caaatggcgt cttctgagca gttgtaatat cgattgagtc ggccatattg       540
     gaaatattaa aaagtgatac aaaagcaaaa attagtgtga aaatatttcg aaaacgaaag       600
     tggaatgctg ttacggtctg caggtgcgaa gaagtcgctg tttgctgttt cacctgctac       660
     tgcttcgcta acggcaaaag tggtgcacac acctacgtta accgtgaaag aacagaagga       720
     gcaacagttg attcgagaag cagatgccaa aatggcggcg actattgatg ctctagtcca       780
     gtgctgcctt tcaaccaagg gcaaaattga ccggattaga caagcgatcc agctggctga       840
     ccatgactac ggtaagttta acatccatgc tttggaatta tacttgaaaa ccgtagatac       900
     agcgtatacg gaatataacg attttcaaaa tcgtatatat atggcggatc catccaagag       960
     agaggaatat gagccacagt tcatcgattt cgaggaactt tacgagttcg tccgcatatc      1020
     attgtgcgaa atgctttcga agtatgagaa agatcagcag gcgaacgatg ctgcttttgc      1080
     ggtcgatgca caacaaaaat tgcaagctct gaaattatca tcgattgaac ccagcagtag      1140
     cagtgctgtt aatgtcccgt cgcgaattcc gtcccttttg ttgcagaata ctcctctgcc      1200
     aacattcgac gggcgttatg aaaattggtt taaatttaaa tcaatgtttt gcgatatagt      1260
     tgacaaatgt gtcgcagact ctcctgctac gaagctgcat tatttggaca aagcactggt      1320
     aggaaaagcg caaggtgcga tagaccagca gacaattaat gataataatt atcaaggagc      1380
     ctggaagatc ttaactgaac gatttgaaaa tcttccgatg gtactgcatg gtcatgtgat      1440
     gaagcttttg aatctgaagc aaatgtctaa ggaatcatct cacgaattga agacattaat      1500
     tgatgattgt gagatgcgtg ttggctcact tgaattccac aagctcaaaa tggatggcat      1560
     gtcggaagtt atcgtcatca cgttgttgac cacgaagttg gaccctgaaa ccagaaagtg      1620
     ttgggaatca actattgagc atggacaaat gcctacctac aaagacacga tcgcttttct      1680
     acgcaaacgg agttacgtgc ttgaacgctg tgaacagatg tctgttgcgc tgaagactag      1740
     agcagtgagc gaaaaatcca agaaccctgt gatgacgagc aagacgcatt cagtggtggt      1800
     acagaaaccc gacgacacat gtccagtttg cgaattgagt catgctgttg aaaagtgcga      1860
     tgcgttcaaa aaattgaatg tcgatgggcg ttacaataag gcaaaacaaa taggcctatg      1920
     cttctcttgc ttgaaaaagg ggcatcgaac ggcgaattgc aggatgaatc tagcatgtgc      1980
     ttcttgttca aaaaagcatc acagcttaat gcatccggag gaacgtaaaa tcgtatcacc      2040
     aaatccatca caagcgccag ccaataagga agaaacacgc tccactggac caccattgac      2100
     ggcagcaaag tgtgtgattc cgaaacaacc tcgtgaacct tcgaagcaag tccttttggc      2160
     gaccgccatg gttggagtaa ttgacgcgtg cggtgttgct catcaatgtc gtgctctgct      2220
     tgactccggg gcaatggcta atttcctttc ggaacgagta gcagatttgc tgtgcctccc      2280
     aaagagaagt attgacatcc cagtggtcgg tgtaaacgga atgaagtcta aagtaaagtt      2340
     tcggatccaa gctgcggtag aatccatggt gaatgatgtt cagttcactc tggactactt      2400
     gatagtgcct cgtgtgacga gcactctccc agcgaagcga atcgacgtct caagttggcc      2460
     aattcctaat gatctgcagc tggctgacag taagttcaac gaaccgagcc gtatcgacat      2520
     gctcatcggt gcggaagtgt tttatgattt gctgcaagca ggtagaataa gaatgtctcg      2580
     tgatcttccc atgctccaag aaagtgttct tggttggcta gtagctggtt ccgtagttga      2640
     agaggagcct gtcagtactg tgcgggtttg tcaaatttca tccgttactg agcctgaaga      2700
     taacttgcaa gagttgctga aacgattctg gaccatcgag gagcaagtgt tcgatgttga      2760
     atctactccg tcagatgatg attgtgaaac gcacttcgct gagacccatg ctcgtaatat      2820
     ggaaggaagg tacgttgtca agttgccgtt ccgagacaat gttaatgacc tgggggagtc      2880
     ccgaatgcag gcggaaaaac gattcatgat gctggaacga aggttaatca agaatccgga      2940
     gatcaagcaa atgtacgatg catttatcga tgaatacctg gcgttgggac atggcgtgga      3000
     aatcgacagc agtgataaaa acgattccga atttgtgtat taccttcctc atcattgtgt      3060
     cgtaaaaccg gacagctctt ctacaaaact cagagttgtt tttgacgctt cggctaagag      3120
     tgaatcaggg ctttcgttaa acgatgtcat gaaggttgga cctacggtgc aaagcagtct      3180
     cttcgacatc attctgcgat tcagaacgtt caagtatacg ttttcagcag atgtaccaaa      3240
     aatgtaccgc caaatcttgg tacatgaaca ggacagaaaa ttccaaagga tccttttccg      3300
     aaaatgtgaa tatgaacctc tgagggagat cgaactcaag acggttacat atggaacggc      3360
     tgctgcacct tttttggcaa ctcgatcgtt gaaccagcta gctgacgatg agagtgaaca      3420
     ttttccagca gctagcgcgt cggtgaaaaa atctttctat attgatgatg ttttgactgg      3480
     agccaattcg ttggaggaag ctattgcgct tcagagggat ttaatcgctc tgcttagcaa      3540
     gggtggcttt gggcttcata aatggtgcgc caaccatccg aagttgttag atgagattcc      3600
     ccttgcagcg caggaaagac aaatgcactt cgatgattgt gatgccaatg gtgtgattaa      3660
     aacacttggc ttatactgga atccagacga tgatcagttt atgtttcgag tctcgccaat      3720
     gaacgaatgt ttaatgaaac ccacgaagcg ccaagtcctt tcggagaccg cgagaatttt      3780
     cgatccattg ggattgcttg ctccggccgt ggtaatttca aaattgctta tgcagcatct      3840
     gtggagagat aaacaggatt gggatgaaca aattccaaat gagtacctga aaatgtggaa      3900
     tcgattcaga accgagcttt ctgaaatcgg gtctgaaaaa atcgaccgtc gggtgacgat      3960
     tgatcaagct gtcagaattg aactccatgg tttcgcagat gcatctggca cagcatatgg      4020
     ttgctgcgtt tacatgcgaa gtgtaaggga agacggagct gtggatatga agctaatttg      4080
     tggaaaatca agagtagctc caacaaagga acttcagcga aatgtcaacc cggaagcaaa      4140
     acctgctgag atgactattc ctcgtcttga attatgtgct gctctgttgt tggcacggca      4200
     aatgaaggca gtgagtgaag cgttggatat gcagccaaat caggtgatat tgtggtctga      4260
     ctctagcatc gtactttgct ggttaaatcg tgtgaagcct gaaacgtcgg tatttgttcg      4320
     aaatcgtgtc acgaagatac atcagcttca accggaggct acctggaagc acgtttcgtc      4380
     caaatcgaac cctgccgatg tggtgtctag aggcttgttc ccgaaggagt taatgattaa      4440
     tgacctatgg tggaatgggc cacgttttct acgattgaac gagttccacg aagaagcgcc      4500
     agatgcagag ttagaagatg gtgcagaaaa ggaagaagat tgtgatattg tgatgactgt      4560
     gacagtgcta gacaatcgtc cgtatgaagt gattctagct agcagtaatt ttcgacgatt      4620
     gcaacgagtt tttggctatg ttggacgttt catttttaac tgcaaaacaa agaacttcag      4680
     tgaaaaacgt ttcaatcgac gattaacatt tgatgagttg gacaatggac taaaactgat      4740
     ggtaaaatgt gtgcaacacg aagtgtatgc tgaagaactt aaatgtatag tgaaaaataa      4800
     accaatcaaa ggaaagctga gaaacttgaa tccagtgtta gatgacaaca tgctgcgagt      4860
     tggaggtcgc atacgacact ctgaccttcc gaaggatcag aaacatcctt acattttgcc      4920
     agagaagaat cattttacgg agattttgat cgagacgatt catcgtgaac atcttcatct      4980
     aggattgaac ggactgctag cggcggtgcg tgccaaattt tggcctgtta acgctaaacg      5040
     aaccatccac cgagttttgc ggaagtgtgt tacatgcttc agaatgaaac cgaaggtgat      5100
     tgagcagtat atgggtgatt tacctagtgc tagggtaact gctgctcact cattttctcg      5160
     cagcggtgta gactatgcgg gaccgttttt acttaaacaa ggtcgtggga gacatccaat      5220
     taaggcgtac gtgtgtttat tcgtgtgcat gagcacaaag gctattcacc tagaattggt      5280
     gacatcactg acgacggatg ggtttatagc caccctgcat agatttgtcg gacgacgtgg      5340
     aaacgtatcc gatctgtact cagataatgg caccaatttt accggagcat ccaaagagtt      5400
     gattgatctg aagaacctct tgaaatctca agctctgcaa caaagagtga atgaattttg      5460
     tcaacaacga ggtaccaatt ggcatttcat cgctccaagg gcccctcacc aaggaggcct      5520
     ttgggaatcc aacgtgaaga gcatgaagaa tcatctcttt aaatcgttgt cagaaagcta      5580
     tttgacctac gaagaaatga atactctttt gatacagatc gaagcaatac taaattcaag      5640
     acctttggtt cccatgactg acgatccgtt cgattatgaa gctctcagcc ccggtcattt      5700
     cttgataggt cgggagctga catctattgc tgaaccgaat tatgaacacc tgaaggatgg      5760
     aacattgtca cgataccaat tgatccagaa acgaaaacaa tctttctgga accgttggtc      5820
     taacgagtat atcaccactc tccagaaacg aagtaaatgg tttaaggaac ctgttcttct      5880
     acgaagcggt ctacttgtaa tcctgcaaga ggataatatg ccaccgcagt cttggagact      5940
     aggcagaata atcgacacac accctggaaa ggatggcatc acaagggtcg tgacggttcg      6000
     cactagcaac ggtacctacc gtagggccac tacgaagata gcggtattac caatcgacga      6060
     taatgttggt ttgacgacgg tgaaagcaga ttgaggtatc cacctcaccc gggggtgaa       6119
//
ID   BEL-721_AA-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-721_AA-I;
KW   BEL-721_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-203
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-203
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 376-376 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 203 BP; 60 A; 44 C; 30 G; 69 T; 0 other;
     tgtttattga aataactttt ttgtcagtgt atcatttttg aaccacccct gcaacacaat        60
     cttgaaaata ctacattgtc acgtcagaaa tcagatacac ttttttcagt tctaataaag       120
     ctatcgcgag ctacagacgc gttttttcgt taataatata cagtccacga gctatttttc       180
     acgctgagtt atccgaacgg cca                                               203
//
ID   BEL-722_AA-I repbase;    DNA;    INV; 6176 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-722_;
KW   BEL-722_AA-I; BEL-722_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6176
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6176
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 426-426 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           664..6144
FT                 /product="BEL-722_AA-I_1p"
FT                 /translation="MALSSEPGKSKRSENEIRANYLISSVAAIETFIETYD
FT                 ADEHADQVAVRLEKLESFYNQYVEVIIQLQLTPSATHEVEYETQLFRFESK
FT                 YYELKAKLSRLLERKAVGTASSSRAGAPTSKNIKYPELKLPEFSGNPLGWR
FT                 SFHDLYNAAVHSSTELSASEKFQYLKSLLRGEAAGLISEIPISDANYAEAW
FT                 QRLVNRFDNKRVLVKCHLAELFETPPMKQESAEGLLNLVDRFDRNISILKK
FT                 LGEPTDSWSTILVYQLSLRLDQNTLREWENYIARSTIDKKEPRDRMPKYAD
FT                 MVTFLQGHARVLQAIAPNPIRNRESKFKSSPKISTLHVSQSSADATPNRKC
FT                 LQCSGDHFLYQCFKFRKLSPKQRFDFVKQQRLCLNCMKTTAHGCKDCTSEG
FT                 CRKCKKRHHTLIHLQPLEASPSPSNPSSSQQPPSSCPPDSASSNAAASPTG
FT                 SNANSTLVSVHQSTLVPVAPSSTSSQPQSNPPAALVAHSAKLPNETVLLCT
FT                 ALVYFEDYCGARVVARVLLDSCSQFNLMTESLYQRLKLPASSEQTNLGGVG
FT                 QIMTTVTRSVETTISSRISAFEKRLKFHVLKTISSDQPVQTLSTVDWEIPS
FT                 WITLADPTFSTPGPVDALLGAGTFFELLRYGRIALGERLPLLQSTVLGWIV
FT                 SGECSNRPSPSIQSCFLTQNQKLEQLVARFWDLEQCSSSTSWSPSEKECER
FT                 HFVANVSRNEDGRYQVRLPVKQELVSRLGDNKHNARRRFLALERKLDANPP
FT                 LRSQYEAFIEEYQRLGHMREVPAEELAAEDDDTPQFYLPHHAILRPDSTTT
FT                 KLRIVFDASCKSGSGLSLNDILMTGPTIQDTLNDIVLRFRMPAFVIMGDLC
FT                 KMYRQILHHPPDQRLLRIYWRQHSSEPLKVFQLLTVTYGTSSAPFLATRVL
FT                 QQLAEDEQERFPLAAAVIRKDMYMDDLLTGCNDVEKLKQLCSQLLGIFESA
FT                 GMQLRKISSNHQEILNEIPEECRETKSLIEFDSDAPVKALGLLWEPATDSL
FT                 LYKMPNFAKCEQYTKRIILSQTSSCFDPLGLLGPAIVKAKILLQTLWKLDY
FT                 DWDHPLPRAFANEWEDYQQRFDQLKTFRFPRHVQSLRRPATVEVHGFSDAS
FT                 EHAYGACLYLRSIAPDGYVTIRLLAAKSRVAPLSNKTIARLELCAALLLSR
FT                 LLLSVCTSIGVTENIFLWTDSTIVLHWLSGSPSTWQTFVANRVAEIQELTN
FT                 KCTWNHVPGEENPADLISRGMDIDQLLNDSLWWNGPPWLGVCDQAWPQTPE
FT                 DLGRLKEKDLEARRGIALPITESEPNDFITRFSSFTVCLRIGALCRRFANN
FT                 CRSIPERRRNGPISVVELKEALYDILRSIQYDHFAPELIALQAGKPIPARS
FT                 KLRHLHPVLQEGLIRVGGRLEHSGVASDKKNPFVLPSKHPLTRLIASTYHH
FT                 QQLHCGPQLLLAVIRQQFWPLSGRNLTRDVVHKCVTCAKARPRNLVQLMGP
FT                 LPAVRVTQSYAFENVGVDFAGPFYLQRPSPRSAPKKSYVAVFVCMATKATH
FT                 LELVSELTTAAFIGCLRRFVARRGRPQHIYCDNATNFVGAGREVRNLFRSS
FT                 NHRHSVTNETASQSIQFHFIPAKSPNFGGLWEACVKSMKHHLRRVIGNAFL
FT                 SREAFCTVLAQVESCLNSRPITPLSSDPNDMQALTPGHFLIGRSLNALPDS
FT                 DYTTIPENRLRLWERVQRHTQHFWKRWHHEYLTTLQQRYKWSTVTRNIIVG
FT                 SMVMIQEESLPVLKWSLGRVVDIHPGADGMVRVASVKLPSGTVTKRSISRL
FT                 CILPVEVDPAILPGPSAGPSTASANSTGSTGDPGHLSASAGAAGPTQDGIS
FT                 SEDED"
XX
SQ   Sequence 6176 BP; 1517 A; 1681 C; 1508 G; 1470 T; 0 other;
     tggtccttcg agccggatcg ctggaccaaa gtgctagtgc gaagtgacgc caagcctagg        60
     ccattttgtg gctggccaat gaccagtgat tggaaacaat agaacggtcg acaatagtgg       120
     gcaaaagaga agccaagcgg acttgccgcc gaaaatttgt gaggccgatt gaacggcagt       180
     gaaagcgcaa attgcgcgaa tgtgaagagt gatcgcgtgg gcgatcgata agtgattgtc       240
     gcaaattgtg aaactgtgaa caaactctca atcacctgga gaaaattgtg cgataaaccc       300
     atttgccatt gtgccgtgtg tgactaccac cgcgtggtga agcgtgataa tcgcctctgg       360
     tgcttttagc acgtggccga agatacgaag attaaagtgc acaaaagggc taatttgccg       420
     aagaaatcag gtgcatcagc gaaccaccgc cgccagcaga aacagcatcg gccgctggtg       480
     gaaactagcc gcatttgggc gtcgttagcg gattcctggt tcctgtttct tcgaaaagga       540
     agcgccgagt agtgccgtcg gcattttgta agaattcatc gcactcaaaa accaggtggg       600
     ttcgttcctt ttgtttttcg tcgatttttg tggcttgagg gtcgattgtg gttgtgtgga       660
     attatggcct tgtcgtctga accggggaaa tccaaaaggt cggagaacga gattcgtgcc       720
     aattacctca tttcgtcggt ggcagccatc gagactttca ttgagacgta cgatgctgat       780
     gaacatgcgg atcaggtggc ggtcaggttg gaaaaactgg agagcttcta caaccaatac       840
     gttgaggtca tcatccagct acagttgact ccgtctgcta cacatgaagt cgagtacgaa       900
     acccagctgt tccggtttga atccaagtat tacgagctga aagcaaaatt gtctcgttta       960
     ctggaacgta aggcggttgg cacagcatca tcgtcacggg ctggtgcgcc cacttcgaag      1020
     aacatcaaat acccagaact gaagctgcca gaattttcgg gaaatcctct cggatggcgt      1080
     tcgtttcacg atctgtacaa cgctgcagtc cattcatcaa ccgaattgag tgcttcggaa      1140
     aaattccagt acttgaaaag tctgttacga ggggaagcag cggggttgat ttccgaaatt      1200
     cccatcagtg atgcaaatta tgcagaagcc tggcagcgtt tggtcaaccg attcgacaac      1260
     aagcgtgtcc tcgtgaagtg ccatctcgcg gagctttttg agacaccacc aatgaagcag      1320
     gaatcggcgg aaggtctcct aaaccttgta gatcgtttcg ataggaacat ctcgattctc      1380
     aagaagcttg gggagcctac ggacagctgg agtacaattt tggtgtacca gctcagcctc      1440
     cgtttggacc agaacaccct gcgtgaatgg gaaaactata tcgcgcgaag tacgatcgat      1500
     aagaaggagc ctcgagacag aatgccgaag tacgctgaca tggtgacatt cctacaaggt      1560
     catgctcgcg tccttcaagc catcgcacca aatcctattc gcaatcgcga atcaaaattc      1620
     aaatcgtccc ccaaaatttc cacgttgcat gtatctcaat catctgcaga tgcaacgcct      1680
     aatcgcaaat gcttgcaatg cagcggtgat cattttttgt atcaatgctt taaatttcga      1740
     aaactatccc ctaaacaacg tttcgatttt gtgaagcagc agcgtttatg cttaaattgc      1800
     atgaaaacca cagcacacgg atgtaaagac tgcacttctg aggggtgccg aaaatgtaaa      1860
     aaacggcatc acacccttat ccacctgcaa ccgttggagg cgtcgccgtc gccttccaac      1920
     cccagcagca gtcaacaacc tccttcctcc tgcccacctg attccgcctc ctccaatgct      1980
     gcagctagcc ccactggatc caacgccaat tcgacactag tatccgtcca ccaatccact      2040
     cttgtaccag tcgccccctc gtccacttcg tctcagccac aatcgaaccc acctgcggcg      2100
     ctggtggcac actcggcgaa gcttcccaac gaaactgttc ttctctgcac ggcgctggtc      2160
     tatttcgagg attattgtgg agctcgggtc gttgctaggg tcctgttgga tagctgttcg      2220
     cagttcaacc tcatgacgga gtctctttat caacgtctca agttgcctgc ttcttcggag      2280
     caaacgaatc tcggcggtgt gggtcagata atgacaactg tgacaaggtc agtggaaacc      2340
     accatctcat cacggatttc tgcattcgag aaaaggttga aattccatgt gctgaagacg      2400
     atatcgagcg accaaccggt gcaaacactc tctacggtag attgggaaat tccaagttgg      2460
     ataactttgg ccgatccgac atttagcact cccggaccag tagatgcctt gctcggtgca      2520
     ggaacattct tcgaactttt gcgctatggc agaattgctc ttggtgaacg gcttcctctc      2580
     cttcagagta ccgttctggg ctggattgtt tccggtgaat gttcgaatcg accgtctcca      2640
     tcaatccaaa gctgtttcct cactcaaaac caaaaacttg agcagttggt ggcccgcttt      2700
     tgggacttag agcaatgttc ctcgtcaaca agctggtccc catccgagaa ggaatgcgag      2760
     cgacatttcg ttgccaacgt ttctcgcaac gaagatggcc gctatcaagt acgattgccc      2820
     gttaagcaag agttagtatc acgtcttgga gacaacaaac ataatgcccg gcgtcgcttt      2880
     ctggcccttg agcggaaatt agatgccaat cctcccctac gatcacaata cgaagcattc      2940
     atcgaagaat accagcgttt aggccacatg cgtgaagtac ctgctgagga attagctgca      3000
     gaggacgacg acaccccgca gttttacctt ccacatcacg ccattcttcg ccctgatagc      3060
     acgaccacga agctccgcat tgtcttcgat gcatcctgca agagcggttc cggtttatcg      3120
     ctgaacgaca ttctcatgac cggcccgact atccaggaca cactcaacga catcgtttta      3180
     cgctttcgaa tgccagcttt cgtcatcatg ggcgatctct gcaaaatgta ccgccaaatt      3240
     ctccatcacc ctcccgatca acgtttgctt cgaatctact ggcggcagca tagctccgag      3300
     ccgctgaagg tgttccagct tcttaccgtc acatacggta ctagttctgc tccattcctc      3360
     gctacacgag ttctgcagca gctcgcggag gatgaacaag aacgattccc cttagcagcg      3420
     gcagtcatcc ggaaggatat gtatatggac gacctgctca ctggatgcaa tgacgtagaa      3480
     aagctcaaac aactctgctc ccaacttctc ggaatcttcg agagtgctgg gatgcaactt      3540
     cgaaaaatat cctcgaatca ccaggaaatt ctcaacgaaa ttcccgaaga gtgtcgagag      3600
     acaaaatcgc tcattgagtt cgattccgac gctcctgtta aggcccttgg cctcctgtgg      3660
     gagccggcta ctgattcgct tctctacaaa atgccaaatt tcgccaagtg tgagcagtat      3720
     actaaacgga taatcctgtc acagacatcc agttgtttcg atccgctagg acttcttggt      3780
     ccagccatcg tgaaagccaa gatcctcctc caaacccttt ggaagctcga ttacgactgg      3840
     gaccatccgc tgcctagggc gttcgcaaac gaatgggaag actaccagca acgcttcgac      3900
     caattgaaaa ctttccgctt tccccggcac gtgcagtcgc tgcggcgtcc ggctacggtg      3960
     gaagtgcatg gatttagtga tgcgtccgag cacgcttacg gggcgtgtct gtatttgcgc      4020
     tcgatcgctc cagatggata cgtcaccatt cggcttttag cggctaagtc gcgagttgcg      4080
     ccactaagta acaaaactat cgcacgattg gagctctgcg cggcgctgct tctgtcgcga      4140
     ttacttctct ctgtctgcac cagtatcggt gttacggaga atatattcct gtggaccgat      4200
     tcaaccatcg ttctccactg gctatcggga agtccatcaa cctggcaaac ttttgtggcc      4260
     aaccgggttg cagaaatcca ggaactcacg aacaaatgca catggaatca tgttccagga      4320
     gaagaaaacc ccgccgatct catttcgcgc ggcatggaca tcgatcagct tttgaacgac      4380
     tcgctctggt ggaacggacc accctggctc ggtgtgtgtg atcaggcgtg gccacagact      4440
     cctgaagatc tgggacgttt gaaggagaag gaccttgaag cacgaagagg aatagcactc      4500
     cctattacag agtcggagcc aaatgacttc atcacccgat tctcgtcgtt taccgtttgt      4560
     cttcgaattg gggcactgtg caggcgtttt gcaaacaact gtcgcagcat accagaacgt      4620
     cgtcggaacg gtcccatatc cgtcgtagaa cttaaggaag ctctctacga catacttcgc      4680
     tcgatccagt acgaccactt tgctccagaa ctaatcgctc ttcaagcggg aaaaccgatt      4740
     cctgcacggt cgaaactgcg ccatcttcat ccagtgctgc aagaaggtct gatccgcgtt      4800
     ggtggccggc tcgagcactc cggcgtggct agcgataaaa agaatccgtt cgtacttcca      4860
     agcaagcacc ccctgacgcg actgattgcc tccacctatc atcaccagca actccactgc      4920
     ggtccacaac ttttactggc tgtcattcgt cagcagttct ggcccctgag cggccgtaat      4980
     ttgacgcgcg atgtggtgca caagtgcgtc acctgtgcaa aagctcgtcc ccgcaatctc      5040
     gtacaactaa tgggtccact accagctgtt cgagtaaccc aatcgtacgc attcgaaaac      5100
     gtcggggtgg acttcgccgg cccgttctat cttcagcgac caagcccccg ctctgcaccg      5160
     aagaaaagtt atgtggctgt atttgtctgc atggccacaa aggcaaccca tctggagctt      5220
     gttagcgagc tcaccactgc agcgttcatc ggatgtcttc gtcgcttcgt agcgaggcga      5280
     ggtcgtccac aacacatcta ctgtgacaat gccactaatt ttgttggtgc cgggcgagag      5340
     gtgcgtaacc tttttcgctc atccaatcat cgtcattccg ttaccaacga gacagcctcc      5400
     caatcgatac aattccactt catcccggcc aaatccccaa attttggcgg gttgtgggag      5460
     gcatgtgtca agtcgatgaa acatcatctg cgacgggtca tcggaaacgc cttcttgtca      5520
     cgggaagcgt tttgcaccgt actcgctcag gtcgaaagct gcctgaactc acgacccatc      5580
     acgccgttgt ccagcgatcc aaacgacatg caagccctaa caccggggca tttcctaatc      5640
     ggtcggtctc tgaacgctct tccggactcc gattacacca ctattccgga gaatcgcctt      5700
     cggctctggg agcgagtgca acgccacact cagcacttct ggaagaggtg gcaccacgag      5760
     tacctcacca ccctgcagca acggtacaag tggtcgactg ttacccgcaa cataatcgtt      5820
     gggtcgatgg tcatgatcca ggaagagtcc ctcccagttc tgaaatggtc tctggggcga      5880
     gtggtagata ttcatccggg cgcagatgga atggtgcgcg tagcctcagt gaagttgcca      5940
     tccggaaccg tcactaagcg ctccatttcc aggctgtgta tccttccagt tgaggtagat      6000
     ccagcgattc taccgggccc aagtgctggt ccctcgacag cttcggctaa ctccacaggg      6060
     tcaactggcg atcctggtca cctcagtgcc tctgctggag cagcaggccc aacccaagat      6120
     ggaatctcca gtgaagatga agattagtgt tgaaatgtaa ttcaaggtgg ccggtg          6176
//
ID   BEL-722_AA-LTR repbase;    DNA;    INV; 484 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-722_AA-I;
KW   BEL-722_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-484
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-484
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 365-365 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 484 BP; 122 A; 107 C; 101 G; 154 T; 0 other;
     tgttaagtag caagctaggt ttcatttaaa tatttaattt tatttttctc taccaaaatc        60
     ccactcctac aacaatatgt tagtttgtgc caccctagtt gtggcaggtc agttttgtat       120
     aagttatata ctgattctga gctagagctc ggacaataga gctttgtttg tccatcctca       180
     acagtactgg ccttaccggc tgctgtctag actgcctata tatgtaggta gcaataaaaa       240
     aactgatata gcaatccagt tagtttatct ccacccggtc accgatctgg acgtaccgca       300
     cgtcgctatc ggtcgaaata aaaagtttat agttatagtg tataactcag tgccggttaa       360
     tttcggtgga agaaatttcg gttcggtccc ctcgacttct ctcgttgccc acagtattgt       420
     cgtgtcggcg gagtcgcgat ttccgcgagt gtccgcgaag tacattcaag tgtcgtctcg       480
     aaca                                                                    484
//
ID   BEL-723_AA-I repbase;    DNA;    INV; 5956 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-723_;
KW   BEL-723_AA-I; BEL-723_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5956
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5956
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..5953
FT                 /product="BEL-723_AA-I_1p"
FT                 /translation="MMASGVNDSQMQKSCSACNRPDHLEDMVACDDCGKWY
FT                 HFSCADVDETIRDRSWKCQPCRLLSTTASRMGATASLNVPTGATKKTTRST
FT                 GSKVTSSRKSKKTNASKTISVTSSARARLALELEVLNEQQQLEELELEEEK
FT                 QIRARQIAQEKLIKDRELEIETKKLAEEKAFLEKKTAEELKFRRDQMAIKK
FT                 KSLEEKAKLIREQSLRGSSRSSSVSQSVSELSEKVNKWLEKTEEHVGENHE
FT                 SALRASDPVNKVLINSFGNLGLTQRDGGEQNGTPSAVLHDLNNCLNEVRPT
FT                 PGPMRERHSSMTRREQENRQLCYDQQNANKEEIIASDNRMDPTNRQLAARQ
FT                 VMGKDLPIFSGNPEEWPIWVSNFERSTATCGFSQDENLIRLQRCLKGPALE
FT                 MVRGRLLTPASVPHVIKTLQLRYGRPETLIRALTEKVRHLPPPKMDKLESI
FT                 IDFGMAVDNLVEHLKTANQYAHLTNPSLLHDLVSKLPVEYRMKWAAFKGAR
FT                 ADADLRIFGTFMNSIMELAFDVVDDHPTSVTSKMQPKPKERVYLQAHSESI
FT                 DDTEAKNENLSNNRMERNQKRACVVCGIEGHRVPECEQFRSLSVDGRLKIA
FT                 NQHSLCRSCLNQHGRWPCRTWQGCGVSGCRLRHHSLLHQSPQVTSVAVSTS
FT                 HLDQKKSSSGPLFRILPVTLYGPSGKIDIYAFIDEGSQLTLLDDDVAVKLG
FT                 LSGPCEPLQLLWTGNITRSESKSKRLLVDISGSQVNQKFKLVNAHTVGKLM
FT                 LPTQTLCYRSLAARYPHLRGLPISDYEEISPKLLIGLDNLKLTIPLKIREG
FT                 DWGHPMAAKCRLGWSIYGCSPNDASTVTCGFHVGGWTNQDQDLNQLVRDYV
FT                 ALDNAGIISPTSHQESEDERRARKILEETTRRITAGFETGLLWKTDNAQLP
FT                 NSFGMAYRRLRSLERKLSKDDQLYERVREIIRDYVEKEYAHEATEHELTTT
FT                 APEKCWYLPLGIVVNQRKNKVRLIMDARAAVDGVSFNSSLLKGPDLLASLP
FT                 AVLSHFRLFQYALAADIKEMFHRIRIREEDRQFQRFLWRDQPHMEPTTFVM
FT                 DVAIFGSTCSPSSAQYVKNLNAQDFASEFPRAADAVVRHHYVDDYLDSFGT
FT                 MEDAVRVGREVKEIHARGGIEIRNFLSNKAEIADRVGAQSLAMEKIFQAGK
FT                 DEEYAESVLGMRWIPSSDNFTYSLQLRENLQYVLEEEYVPTKREVLRIVMS
FT                 LFDPLGLITFYLIHGRILMQEIWSAKIDWDDVLNKELCERWRLWIRYLPQL
FT                 DTLRIPRCYFAGGNQETYGTLQIHVFVDASESAFSSVAYFRVNTTSGADVI
FT                 LVSAKSKVAPLKMLSIPRLELQAAVLGTRLLNSVIAMHGLQVTKRVLWTDS
FT                 RTVLAWINSDHRRYHQFVGFRVAEILSTTEAAEWRWIPSKANVADLATKWG
FT                 AGPDLSGNSVWFRGPEFLRQSENMWPQQQQQPTLTTEEIRSCHLYVSEPEL
FT                 IVNPLRFSRWERLHRTLGYVHRFLDNLKRKPKGIPLELGHLTQFELILAER
FT                 SLWKLAQKGYYSAEVKQLGEDSCAVVPKTSKIYKLCPFLDKCGVLRMRSRL
FT                 ELSSYVPYEMKFPVILPPNSTITNLLADWFHRRYQHANRETVVNEMRQRYH
FT                 IPNMRALVAKVAKNCMHCRVRKATPKPPAMAPLPKVRLTPFVRPFTYVGLD
FT                 YFGPILVKQGRSNVKRWIALFTCLSIRAVHLEVVHTMSTESCILAIRRFVT
FT                 RRGAPAEIFSDNGTNFHGANNKLQKQIQERNQTLSAIFTNTNTKWSFNPPG
FT                 APHMGGAWERMVRSVKVAMGTIAEATRKPDDETLETVIIEAEGIINSRPLT
FT                 YIPMDSADQESLTPNHFLLGSSNGVKQLSVMPTEYKMTLRSSWKLAQHLAD
FT                 GFWRRWLKEYLPVISRRSKWFENVRDISVGDLVLVVNGGVRNQWTRGRVEK
FT                 VILGADGKTRQAWVRTAGVLHRRPAVKLALLDVMESSKLDQRSHSRLREG"
XX
SQ   Sequence 5956 BP; 1769 A; 1311 C; 1477 G; 1399 T; 0 other;
     ttctttaaaa atcttcatcg actccttcag catgatggca tcaggagtga acgattcaca        60
     aatgcagaaa agctgctcgg cctgcaaccg ccccgaccac ctcgaagaca tggtggcatg       120
     cgatgattgc gggaaatggt accatttcag ctgtgcggac gttgacgaaa ccatcaggga       180
     ccggtcatgg aagtgtcaac cctgtcgact cctctcaaca acggcgtcaa gaatgggagc       240
     tactgcaagc ttgaatgtac caaccggagc tacgaagaag actacgagat ctactggtag       300
     taaggtaacg agttcccgta agtcgaaaaa gaccaacgct agtaaaacta taagtgttac       360
     ttcaagtgcg agagcacgac ttgccttaga gttagaagtt ctcaatgagc agcagcaact       420
     agaagaatta gaactagagg aggaaaaaca gattagagct agacagatcg cccaagaaaa       480
     gctgattaag gatcgtgaat tagaaataga aactaaaaag ttagctgagg aaaaggcgtt       540
     tttggagaaa aagacggccg aagagctgaa atttcgtagg gatcaaatgg ccattaagaa       600
     gaagtcgtta gaagaaaaag ctaaactaat tcgtgagcag tcactgcgcg gaagtagtcg       660
     atcgtcgagc gttagtcaaa gtgtttcaga gctgagtgag aaagtgaaca aatggttgga       720
     gaaaacggag gagcacgtcg gcgaaaacca cgaaagtgca ttgagagcaa gtgatccggt       780
     taacaaggtt ttgataaatt cattcggtaa tctcggatta acgcagcgtg acggcggtga       840
     acaaaacggt accccatcag cagttcttca tgacttgaac aactgtctca acgaagtgcg       900
     gccaactcct ggacccatgc gggagaggca cagcagcatg acaaggcgcg aacaggagaa       960
     tagacaactg tgttatgacc aacaaaatgc caataaagag gaaataatcg cgtctgataa      1020
     tcgaatggat cctacaaatc gtcaactggc agcacgccag gtcatgggta aggaccttcc      1080
     aattttctct ggcaacccag aagaatggcc catttgggtc agtaattttg aaaggtcaac      1140
     ggcaacatgt gggttttctc aggacgagaa tctaattcga ctgcaacgtt gcctcaaggg      1200
     accagcactc gaaatggtgc gtgggcgact cttaacaccc gctagtgtgc cacacgtgat      1260
     taagactttg caattacgct atggtcgccc agaaaccttg attcgagccc tcaccgaaaa      1320
     ggttcggcat cttccgccgc cgaagatgga taaattggaa agcataatcg atttcggcat      1380
     ggccgtggat aatctcgtag aacatcttaa aacagcgaac caatatgctc atctaacaaa      1440
     cccctctctt ctgcacgatt tggttagtaa gctgccggtc gaatacagaa tgaagtgggc      1500
     agcatttaaa ggagctcgag ctgacgccga tttgagaatc ttcggaacct tcatgaactc      1560
     aatcatggag ctagcctttg acgtggtgga tgatcatccg acaagtgtaa catctaaaat      1620
     gcaaccaaaa ccgaaggaac gggtttacct acaggctcat tccgagtcaa ttgatgatac      1680
     cgaagcaaag aatgaaaacc tttccaataa tcggatggaa agaaatcaaa aacgggcttg      1740
     tgtggtgtgc ggtattgaag gtcatcgcgt tcctgagtgt gagcaattca gatcgcttag      1800
     cgtcgatggg agactgaaaa tcgcaaatca gcattcgttg tgcagaagtt gcttgaacca      1860
     acatgggaga tggccctgtc ggacctggca agggtgtgga gtttcaggct gtcggctgag      1920
     acatcattcg ctgctccatc aatcaccgca ggtcacttca gttgctgtat ccacaagtca      1980
     tctggatcaa aagaagtcat ctagcggtcc tttgttcaga attctgccag ttaccttgta      2040
     cggcccaagt ggaaagatcg acatctacgc cttcatcgat gaagggtcgc agttgacgct      2100
     cttggacgac gatgttgctg taaaactagg actttctgga ccatgcgaac cgctgcagtt      2160
     attatggaca ggaaacataa cccgtagtga atcgaaatct aagcgacttt tggtggatat      2220
     ttctgggtct caagtaaatc aaaagtttaa gctagtcaat gctcacaccg tcggaaaatt      2280
     gatgcttcct acgcagacac tttgctaccg gagtctagcg gcacgatacc cccatcttcg      2340
     aggtcttcca ataagcgatt acgaagaaat ttcaccgaag cttctgattg gtcttgacaa      2400
     tctgaagctc acaataccgt tgaaaattcg agaaggagat tggggacatc ccatggcagc      2460
     aaaatgccga cttggatgga gcatctatgg atgttcgccc aacgatgcaa gcaccgttac      2520
     atgtgggttt catgttggag gatggaccaa tcaagaccaa gatctaaacc aattagttag      2580
     agactatgta gctttggata atgctggtat aatatcgcca acctcgcatc aagagtcaga      2640
     agatgagcgc cgtgcacgaa aaatattaga ggagacaact cgaagaatta ccgccggatt      2700
     tgaaaccggt cttctttgga agacagataa cgcacaactg cctaacagtt ttggtatggc      2760
     gtataggcgg cttcgcagtt tggagagaaa gctttcaaag gatgaccaac tttacgaacg      2820
     tgtgcgcgaa atcattcgtg attatgtcga aaaggagtat gcgcacgaag ctactgagca      2880
     tgaactcaca actacggcac cggaaaaatg ttggtattta ccgcttggaa ttgtggtcaa      2940
     ccaaaggaag aacaaagtcc ggttgattat ggatgcaaga gctgccgtgg atggtgtatc      3000
     attcaattct tctcttctga agggtcccga tctactagcg tcattaccgg cggttcttag      3060
     tcattttcgc ttattccaat acgcactggc agccgatata aaggagatgt ttcatcgcat      3120
     cagaattcga gaagaagatc gacaattcca acgtttcctc tggcgggatc aaccacacat      3180
     ggaaccgaca acatttgtga tggatgtggc aattttcggg tccacctgct ccccaagttc      3240
     ggcgcaatat gttaagaact tgaatgctca ggattttgca agtgagttcc ccagagcagc      3300
     agatgccgtg gtgcgtcatc attatgttga cgactatcta gatagcttcg gaacaatgga      3360
     ggacgcggtg agggtcggtc gagaagtgaa ggaaattcac gcaaggggtg gaatcgaaat      3420
     tagaaatttc ctgtccaaca aagctgagat cgcagaccgt gtaggagcgc aatcattagc      3480
     tatggaaaaa atattccaag ctgggaagga tgaagaatat gccgaatcag ttcttggtat      3540
     gagatggatt ccttccagtg ataacttcac ctactcattg cagcttcgag aaaatctaca      3600
     atacgtcttg gaagaagaat acgttcccac aaaacgtgaa gttctacgaa tcgttatgag      3660
     tctctttgat ccactaggac taataacttt ttacttgatc catggtagaa ttctcatgca      3720
     agagatatgg tccgccaaga ttgactggga tgacgtactt aacaaggagc tgtgcgaacg      3780
     ttggcgatta tggatcagat atctcccaca attggacaca ctccgcattc cgcgatgtta      3840
     ctttgcagga ggcaatcagg agacctacgg tactcttcaa atacacgttt tcgtggatgc      3900
     aagcgagtct gcattttcca gtgtagcata ttttcgcgtg aacaccactt caggagcaga      3960
     cgtaatacta gtatcggcca aatcgaaagt ggctccgtta aaaatgctat caattccacg      4020
     attggagtta caggctgccg tgttgggcac gcggctgctg aatagtgtca tcgctatgca      4080
     cggtctccaa gtaactaaac gagtgctctg gactgattct cgaaccgtgc tagcgtggat      4140
     aaattccgat catcgcagat atcaccagtt cgtggggttt cgtgtagcag aaattctatc      4200
     gacgacggaa gctgccgaat ggcggtggat tccctctaaa gcaaacgtag ctgacctagc      4260
     aacaaagtgg ggtgcaggac ccgatcttag cggaaacagt gtatggttcc gtggcccgga      4320
     attcttgcgg caatcagaaa atatgtggcc gcaacaacag caacaaccaa ccctgacgac      4380
     tgaagaaatc agatcctgtc atctctatgt atcggaaccc gaactaatag tcaatccgct      4440
     ccgttttagc cgttgggaaa ggctccaccg aacgttagga tacgttcacc gtttccttga      4500
     taatctcaaa cgaaagccta aaggaattcc gttggaactg gggcacctta cccagtttga      4560
     attgatcctt gcagaacgaa gcctgtggaa gctagcccag aaaggatatt actcggccga      4620
     agtgaaacaa cttggcgagg acagctgtgc agtagtcccg aaaacgagta aaatttacaa      4680
     actgtgccca tttttggaca agtgcggagt acttcgcatg cgaagtcggc tcgagttatc      4740
     ttcgtacgtg ccttacgaga tgaaatttcc cgtaatactt ccaccaaact ctactatcac      4800
     gaacttacta gcagattggt ttcatcgccg ttatcaacac gcaaatcggg agacggtagt      4860
     caacgagatg cgacagcgtt accacatccc aaacatgcga gcgttggtag caaaagtagc      4920
     gaagaactgt atgcactgca gagtacggaa agcaactcca aaaccaccag cgatggctcc      4980
     gttaccaaaa gtacgactga ccccattcgt tcggccgttc acctacgtgg gcctcgatta      5040
     cttcggacca atattggtca aacagggacg aagcaacgta aaaaggtgga ttgcactatt      5100
     cacgtgtctc agtattcgtg cagtacactt ggaagtcgtt cacactatgt ctacagagtc      5160
     atgtatcctg gcgatccgaa gattcgtgac acgtcgagga gctccagctg aaatattcag      5220
     cgataacggg acaaattttc acggagccaa taataaactt caaaaacaga ttcaagagcg      5280
     caaccagact ctttccgcaa tttttaccaa tacgaatacg aaatggtcct ttaaccctcc      5340
     aggcgctcct catatgggcg gagcgtggga gcgtatggtc cgttcagtaa aggtagctat      5400
     gggtacgata gctgaagcca ccaggaaacc cgatgatgaa acattggaaa ctgttattat      5460
     tgaagccgaa gggatcatta attcacgacc tctaacatac atccctatgg attctgcgga      5520
     tcaggaatcc ctaacaccta atcatttctt actggggagt tcaaatggtg ttaagcaatt      5580
     atctgtgatg ccgacagagt ataaaatgac tcttagaagt agctggaagt tggctcaaca      5640
     tttggccgac ggattttgga ggcgatggct caaagaatac ctgccagtaa tatcgcgacg      5700
     atccaaatgg ttcgaaaatg tgagggacat atcagtaggc gatcttgtac tcgtcgttaa      5760
     cggaggtgta aggaatcagt ggacaagagg acgcgtagag aaggttattc tgggtgcgga      5820
     tggcaagaca cgacaagcat gggtacgaac agctggagta ttgcatcgac gaccggcagt      5880
     taaactggcg ttactcgacg tcatggaaag cagtaaactg gatcaacgca gccatagtcg      5940
     tttacgggag ggggca                                                      5956
//
ID   BEL-723_AA-LTR repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-723_AA-I;
KW   BEL-723_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-662
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-662
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 377-377 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 662 BP; 244 A; 113 C; 105 G; 200 T; 0 other;
     tgtgacggcg agcaacccta gcctccttga tcagactgcc ctgttgcata ttttctctca        60
     tgcgcatgtt tgacactgac agtttaacct gacagttcgg aaaatgatat gaaacagcac       120
     tattgaattc gctactaaaa caaactactc gtctgatcga tttggtgaat catctcttca       180
     ttgaatttat gaatatttct tttataaacc cgtgaaaata ttgtcgattt tgctgaaata       240
     tttccgagtg aacagtaaga catatgaatt aaaacacaaa caatttgcta ctatttatta       300
     aaaattacag ataatttaca cgtgcgctga agtcattgat attattgaaa actgttgtct       360
     aaaagtttaa aatatattta gtagagccaa aacataaagt aagtacacat aaaattggaa       420
     aacgatagtt aaaatgtctt aaattagtca tgcaatttgt tcttatagcc tacagttaaa       480
     acttaaccta agaaaccaca cgctaagaaa ggaatcggaa gaagataaga aaactgaaga       540
     tttgtaagtt aaagtttata atgataattc gaagtataat cctaacactg aaatatatta       600
     cagttaaagt tgccctgaca ctacaacccg tggtaccgct actaggaaat tcagtccgaa       660
     ca                                                                      662
//
ID   BEL-724_AA-I repbase;    DNA;    INV; 5785 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-724_;
KW   BEL-724_AA-I; BEL-724_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5785
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5785
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 427-427 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..5748
FT                 /product="BEL-724_AA-I_1p"
FT                 /translation="MTSIKKELKTLLRQRANILGSAALIKQFNDQYQEGQI
FT                 HQVKVRIESLDLLRAEFASVQDEIEELEGHDRSDEDESDDDVEPTLSEHRI
FT                 RFQNMYFELKASLVSKMPEIHQSSTSNYRPSPAQPTHTVRLPEINIPEFCG
FT                 DPSNWIVFRDIFRSMIHANVQLSSVQKMHYLKAALKGEAARIVANLEVNAE
FT                 NYLIAWKSVCERYDNTNLLRKHHFAALFSIPCVKKATSSSLYELVDEFAHH
FT                 VGILEKLDNPANLWNTVLVETLSKRLDVVTLKEWEHSCKGDQRPTYQQLVD
FT                 FIRKTSRVLQSVNLLQPQNQVLEPKHSKPKSVSANLATEIGSKCSLCKQAH
FT                 PLFKCDQFLGMESKQRFELVKKHGLCINCLKGTHLAKNCSSGSCKNCSKKH
FT                 HTLLHLPPLVVPVKSTVQTALACSTVPSEVVASEPTRLNPVETETQARAPP
FT                 PSRPSSVEPGSSNSYSCSVVVAPSPPSVSPPPSRPIVSDFVLDSCTVASYV
FT                 APQKDSVKARSDEIFLSTVVMKVKDVNESYHCTRGVLDSCSQANFISESLA
FT                 RKLELKRDRTSVDVSGIGQGIVHIRSKVIIKISSRFGGFEYLLECLVIPQI
FT                 TVTLPSKHIDISRWNLPANIPLADPRFNISSGVDILIGGELFYSLMETHKV
FT                 YLSSGYPMLQKTVFGYVVAGKLSEQLHTSSISIVSATASLDSKLQRFWEVE
FT                 NFDDYKAMSPMEEACEEHFRRTVTRTDEGRYMVRLPIREDMLALLGDSYAV
FT                 AQRRFLAIERKFTANCEFKSDYVKFMEEYAALGHMELSPRVENPQFVLPHH
FT                 AIFRPDSATTKTRVVFDATCRGSSQLSLNDLLLVGPIVQPPLLAIVLNWRI
FT                 PRFVFKADIEKMFRQIMVHPLDRRFLQVLWRTDAFQPLQRYQLTTVTYGTS
FT                 CAPYLATRVLNQLAEDEGHRFPLGAKIILKGFYMDDALSGDDDLETAIEAS
FT                 KQLAELLKLAGFHLRKWSTNDPKVLEHVSDDLKEFSPETELDSAGAVKTLG
FT                 LLWSHGTDEFGFKIPTLSPIERVTKRIVASEMAQLFDPLGLVGSVVMSAKM
FT                 FIQKLWAIHIPWDEELPDNLKDWWLRFRAEIPELSKLKVPRRVLANTNNDY
FT                 ALHCFCDASDRGYGACVYVVSSNGTGSNASLLLIAKSRVAPLRGLTTPKLE
FT                 LCAALLGSQLLEQVRKNTNFSKMVTFWSDSSIVLHWLQSPPTIWKVFVSNR
FT                 IAEVQKLTNKDIWRYVPSKENPADRISRGALPSQIIEDSLWWHGPKFLLQS
FT                 VKDWPESIIHLSRTDQEARDVEARRAVTFATVQHDQSVIDRYSELGKLLRV
FT                 AGYCFRFCSNASSSREGRTIGPLQPCEVDYALKSLIRSVQASEFPEELQYL
FT                 AANPPRRLTSKDRRLKTSFKSLNPFLDDFGLLRVGGRLAKLSASLDTRSPI
FT                 LLPANHRLSWLIARSLHLRTLHGGPTLLLSIMRQRFWPLRGRDLARRVVRQ
FT                 CVTCFRCSPKPTEQFMAPLPSVRITPARVFLNSGMDYCGPFSVRPLVGRGA
FT                 NVKIYVAVFVCMVVKAVHLEIVNDLSAVACINAVKRFIARRGRVVNLYCDN
FT                 STAFVGADRQLKQLRRQFLQQYSTEQWNGYCLENGINFRFIPPQSPHHGGL
FT                 WEAGVKSFKHHLRRVLGRRSFTLEELSTAVAQIEGILNSRPLSPMSSHPQD
FT                 LSSLTPGHFLVGEPMYSIPEPDYTEHPINRLTRFQEMKRSVQDFWKRWSRD
FT                 YISELHQRFKWQRVRKEVKIGSLVLLKQDNVPPLEWNLGRVIGVSQGEDGH
FT                 VRVVEVRTAKGTYRRAITEVCLLPIDEPESTLTNQDDSTEPSTXTS"
XX
SQ   Sequence 5785 BP; 1502 A; 1380 C; 1388 G; 1513 T; 2 other;
     tttggtgccg aaacccggga gcacgtgttg cagacatttc tcgaaggcag ccatttgtcg        60
     tcggcgtcgt gtatctcgtg tgtgtggttc cacgcggtat atcagaatca tcgtggtgaa       120
     tttactccag gcggatcgga ccagcgaaga tcgcctagca ttcatctcgg catcacgata       180
     ttccggacac tcgtgacgaa tctcgattat cacaaccctg gctggcaagt acggtagagg       240
     tgaccctata caacgacatc aggtgggtgc cattttctat tgtttgttgc ccatacaatg       300
     acttcaataa agaaagaatt gaaaacgctc ttgcgacaaa gagcaaacat tctgggctct       360
     gctgctttga tcaaacagtt caatgatcaa tatcaagagg gtcaaattca ccaagtgaag       420
     gtgaggattg agtcactgga tcttttacga gcggaattcg ctagtgtaca ggacgagatc       480
     gaagagcttg agggacacga tagaagtgac gaagatgaaa gtgacgatga tgttgagcca       540
     acgttgtccg aacatcgcat ccggtttcaa aacatgtatt ttgagctcaa ggcatcgctc       600
     gtcagcaaga tgccagagat ccatcaatcc tctacttcga actatcgccc ttcgccggct       660
     caaccaacgc atactgtgcg gttgccggaa ataaatatcc ccgagttttg cggtgatcca       720
     tcaaattgga ttgtctttcg agatatcttt cggtctatga tacatgctaa cgttcagctt       780
     tcctcagtgc agaaaatgca ctatttgaag gcggctctca aaggagaagc tgctcgtatt       840
     gttgccaatt tggaggtaaa cgcagaaaac tatctgatcg catggaaatc tgtgtgcgaa       900
     cggtatgaca atacgaacct cttgcgaaaa catcatttcg cggccttatt ctccattcct       960
     tgtgtgaaaa aggctacatc gtcgagtttg tatgagttgg tcgacgaatt tgctcaccat      1020
     gtgggtatct tagagaagct tgacaacccc gctaatctat ggaataccgt gctagttgag      1080
     actttgagca aacggcttga tgtcgtcaca ctcaaagaat gggaacattc atgtaagggc      1140
     gatcaacgtc ctacttacca acaactggta gattttattc gcaaaacatc acgagtcttg      1200
     cagtctgtca acctgctgca gcctcaaaac caagtcctag aaccaaagca ttcgaaaccc      1260
     aaatcagttt ccgcaaatct cgcaaccgag ataggaagta aatgttccct ttgcaagcaa      1320
     gcccacccgc tctttaaatg cgatcaattt ctcggcatgg aaagcaagca gcgttttgaa      1380
     ttggtgaaga agcatggatt gtgcattaat tgcctgaagg gtacacattt ggcgaaaaac      1440
     tgtagcagtg gtagttgcaa aaattgttcg aagaagcacc atacacttct gcatttgcca      1500
     ccgctagtcg taccggtgaa atcgaccgta caaaccgcgt tagcctgttc tacggttccc      1560
     agcgaggtgg tcgcttcaga accaacccga ttgaacccgg tcgaaaccga aacgcaagcg      1620
     cgtgctccac caccatcgcg tccgtcgtcg gtagaacctg gttcgtcaaa ctcgtattcg      1680
     tgttcggttg tcgttgctcc ctccccgccg tcggttagtc cgcctccgtc gcgaccgatc      1740
     gtaagtgatt ttgttttgga ctcctgtact gtggcttcct acgttgctcc tcaaaaggat      1800
     tccgtaaagg cgcgcagcga cgaaatcttt ctgtcaacgg tggtgatgaa ggtaaaggac      1860
     gtaaatgaaa gttaccattg cacacgagga gttctagaca gttgttctca agccaacttc      1920
     atctcggagt ccctggcacg gaagttggaa ctgaaacgcg atcggacaag tgtcgatgtt      1980
     agcggaattg gtcaaggtat cgttcacatt cgttcgaagg ttatcatcaa gatctcgtct      2040
     cgcttcggag gatttgaata tctccttgaa tgccttgtaa taccacaaat cacagttacg      2100
     cttcctagca agcatatcga tatttctcgt tggaacctcc ccgcaaacat tcctcttgca      2160
     gatccaaggt tcaatattag ctctggggtt gacatcttaa ttggtggaga actattctac      2220
     tcgttgatgg aaacacataa ggtgtatcta tcgtctggtt atccgatgct gcaaaaaact      2280
     gtcttcggat acgttgtagc agggaaacta tctgaacagc tgcacacgtc atcaataagt      2340
     atcgttagtg caactgcaag tctcgacagt aaactacaac gtttttggga ggtcgaaaac      2400
     tttgacgact acaaagcaat gagtcccatg gaagaagcgt gcgaagaaca ctttcgcagg      2460
     acggtaacaa ggacagatga aggacgttac atggttcggc ttccgatccg agaggatatg      2520
     cttgctttgt tgggagattc gtatgctgtg gcacagcgta gatttttggc gatagagcgg      2580
     aagtttactg caaattgcga gttcaagagc gattacgtga agtttatgga ggagtacgcg      2640
     gcattaggcc atatggagtt gagtcctcgc gtcgaaaatc cccagtttgt tctgccgcac      2700
     catgccatct tccgcccaga cagcgctacc acgaaaactc gcgtagtgtt tgacgccacc      2760
     tgcaggggaa gttctcagct gtcgttgaat gatctattac ttgtcggtcc tattgtgcaa      2820
     ccacctcttc ttgctatcgt gctcaactgg cgaattcctc ggtttgtttt caaagcagac      2880
     atagaaaaaa tgttccgcca gattatggtc catccgctag accgccgttt tcttcaagtc      2940
     ctgtggcgga ctgatgcatt ccaacctctc cagcgttatc agcttactac agttacgtac      3000
     ggcacgtctt gcgcaccgta tcttgcaaca cgggtgctaa accaactagc ggaggatgaa      3060
     ggccatcgtt tccctctcgg tgcaaagata atcctcaaag gtttctatat ggacgatgcg      3120
     ttgtctggcg acgatgattt ggaaaccgct atcgaagcaa gtaaacagct ggcagaactt      3180
     ctaaagctgg caggtttcca cttgcggaaa tggagtacta acgatcctaa ggttttggag      3240
     cacgtgtcgg atgatttgaa ggagttttca cctgaaactg agctcgacag tgctggagct      3300
     gtcaaaacat tgggtcttct gtggtcgcac ggcacggatg agtttggatt caagattcca      3360
     acattatcac cgatcgaaag agtcactaaa cggattgtgg cttctgagat ggctcaacta      3420
     tttgatcctc taggattagt cggatccgtg gttatgagtg cgaagatgtt catacagaag      3480
     ctttgggcaa tacatattcc ttgggacgag gagcttcccg acaatcttaa ggactggtgg      3540
     cttcgcttcc gtgctgagat ccctgagcta tctaaactga aggttccacg acgggtatta      3600
     gcaaacacga acaacgatta tgctctccat tgcttctgtg atgcgtccga ccgtggatac      3660
     ggcgcttgtg tctacgtagt ctcatcgaat ggcacaggat cgaatgcaag tctattactt      3720
     attgcgaagt cccgagttgc tccattgcgt ggcttaacta cccctaaact tgagctatgc      3780
     gccgctcttc tgggtagtca gttgttggaa caagtccgca aaaatacaaa cttttcgaaa      3840
     atggttacgt tctggtccga ttccagtata gtactgcatt ggcttcaatc tccgccaacc      3900
     atctggaagg tttttgtctc gaacagaata gcagaagtac aaaagttaac taacaaggac      3960
     atttggagat atgtcccatc gaaggagaat ccagctgatc gtatatctcg tggtgcactg      4020
     ccgtcgcaaa tcatcgaaga ctcgttgtgg tggcatgggc cgaaatttct cttacaatct      4080
     gtgaaagatt ggccggaatc cataatccac ctctctcgta cagatcaaga agcccgagat      4140
     gttgaagcac gtcgtgcagt cactttcgca actgttcaac acgaccagtc cgtcatagat      4200
     cgatattctg aattgggtaa actacttcgg gttgccggat attgttttcg attctgttcc      4260
     aatgcctcaa gttcaaggga gggtcgaacc atcggtcctt tacagccttg tgaagtagac      4320
     tacgccttga agtcactcat tcgctccgtc caagcttcag aatttccgga agagctgcaa      4380
     tatctcgctg caaatccacc acgaagacta accagcaagg acaggagact taaaacttct      4440
     ttcaaatctc ttaacccatt tttggatgat tttggattac tacgcgtagg tggtcgcttg      4500
     gctaaactgt ctgcatctct cgatactcgc tcacccattc tgctacccgc taatcatcgg      4560
     ttgtcatggt tgatcgcacg ttctctccac ctcagaacac ttcacggtgg accaacgctg      4620
     ctactttcga tcatgagaca gagattctgg ccacttcgtg ggcgagatct kgcacgcaga      4680
     gtagtacgcc agtgcgtcac atgctttcga tgttcaccca aaccaacgga gcagttcatg      4740
     gcacctctgc catcagtgag aatcactcca gcacgagtgt tcttaaatag tgggatggac      4800
     tactgcggtc cgtttagtgt tcgtccgtta gttgggagag gagcaaatgt gaagatatac      4860
     gtcgcggtat ttgtttgtat ggtggtgaag gcggtacacc tcgaaatcgt gaatgatttg      4920
     tcggccgtcg cgtgtataaa tgcggtaaaa cgtttcatcg cacgtcgcgg tcgcgtcgtt      4980
     aatctctact gcgacaactc aacggcattt gtcggtgcag atcggcagct taaacagctg      5040
     cgtcggcaat tccttcagca atattctacg gaacagtgga acggatactg tttggaaaac      5100
     ggaatcaact ttcgttttat ccctcctcaa tcccctcacc atggcggcct gtgggaggca      5160
     ggggtgaaat cttttaagca ccaccttcgg cgagtgctgg gaagaaggtc gttcacatta      5220
     gaagagttgt ctaccgcagt tgctcaaatt gagggaatcc tgaattcgcg tccattatcg      5280
     ccaatgtcca gtcatccgca agaccttagc agcctcacac caggccattt ccttgtagga      5340
     gagccaatgt attcgatccc tgagcccgat tacaccgagc atcccatcaa tcggctaact      5400
     cgcttccaag aaatgaaacg cagcgtccaa gacttttgga aacgctggtc tcgcgactac      5460
     atcagtgagt tacatcaacg cttcaaatgg caaagggtac gaaaggaagt taaaataggt      5520
     tcactagtcc tattaaaaca ggataatgtt ccaccgttag aatggaactt aggtcgagta      5580
     atcggtgtat cgcaaggaga agatggacac gtacgggttg ttgaagtccg taccgccaag      5640
     ggtacctaca ggcgagcaat caccgaggtt tgcttgctcc caattgacga acccgaatca      5700
     actctaacca atcaagatga ttctaccgaa ccttctaccg mgacttcgta gatggttgaa      5760
     gctggacgtt caacggcggc cggca                                            5785
//
ID   BEL-724_AA-LTR repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-724_AA-I;
KW   BEL-724_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-409
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-409
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 366-366 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 409 BP; 131 A; 98 C; 59 G; 121 T; 0 other;
     tgttgacaat aaagctgatg aacctctaat taagaaataa tattgaattt atttgaattt        60
     ttatagaatt tgtaacacca tacacatgca ctcttgaaat agattcacct tgttcgatta       120
     tcttgatttt ccccattaca cataacggtt catgtatgta taatcacact atcaccacaa       180
     atagaattgt aaatgaaaac gaaataaagt tagtgttaaa ttgaagttca taccgaccgg       240
     ttcgttctct cagtctgcgg aagaaaaacc acaaaatccc tatccgctgg ccagttccag       300
     cttgcttcca tttcgtcgtc gctctgtcgt taagatcaac ccaccagacc ctcaccatac       360
     cagccaaatt cgctccaact gcctaagctc gaaggtttgc tcccaaaca                   409
//
ID   BEL-725_AA-I repbase;    DNA;    INV; 5932 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-725_;
KW   BEL-725_AA-I; BEL-725_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5932
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5932
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 428-428 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..5929
FT                 /product="BEL-725_AA-I_1p"
FT                 /translation="PIKIFIDSSSMATSKVNDPQGQRSCTACNRPDHIEDM
FT                 VACDDCNTWYHYSCAKVDHTIMDQSWKCHPCGLISKTVVATNVGVGANLNV
FT                 PTGATKKTTRSAGSRAGSHKSKKTNASKTVSVSSSARARLALELEVLNEQQ
FT                 HLEELELEEEKQIRAKQIAQEKLIRDRELEIEAKKLAEEKAFLEKKTAEEL
FT                 RFRRNQMAIKKKSLEEKAKLIREQSQRGSSRASSVSHSESELSVKVKKWLE
FT                 NSEQHSASNDPTNRELVNSLQELGLTPRYSGQQTTDFAAKLVGKETPTEGN
FT                 QERNLLTTEGNNKEADGVSESICVPRHREGAENETPRVMEYQTEDGPTNRQ
FT                 LAARQVMGKDLPVFSGNPEEWPIWVSNFERSTTTCGFSQDENLIRLQRCLK
FT                 GPALEMVRGRLLTPASVPHVIKTLQLRYGRPETLIRALTEKIRNLQPPKMD
FT                 NLESIIDFGMAVDNLVEHLKTAGQNAHLMNPSLLHDLVAKLPVEYRMKWAA
FT                 YKGARVNADLRIFGTFMNSIVELAFDVADDHPVSKPFKAQQKPRERGYAQT
FT                 HSESPYTEEIVSSNSLTHAEKSHKRACAACGTEGHRVHDCEQFRSLNVDDR
FT                 LKIVNQNSLCRTCLNQHGKWPCRTWQGCGISGCRLRHHTLLHASSPVMSIA
FT                 VSTSHLDQKQSVDGPLFRILPVTLYGPSGKVDIFAFIDEGSQLTLIENEIA
FT                 SKLGISGPCEPLQLLWTSNITRNEADSQRLLMDIAGSQGSQFKLVDARTVG
FT                 KLMLPAQSLNYQSLAEKYHHLRGLPIKDYEQVVPKLLIGLDNLKLTIPLKI
FT                 REGGWSHPMAAKCRLGWSIYGCSPSEAIPVTCGFHVGGWTNHEQELNQLVR
FT                 NYVALDNSGIVSPATLLESEEDQRAREKMELTTRRISTGFETGLLWKTDNV
FT                 RMPNSYGMAYRRLRSLERKLSNNEQLYESVRTIILDYLAKQYAHEATRHEL
FT                 TTTKPEKCWYLPLGVVVNARKNKVRLIMDARATVDGVSLNSSLLKGPDMVT
FT                 SLPAVLCNFRMFQFALAADIKEMFHRIKIREEDRQFQRFLWRDRPDIEPTI
FT                 FVMDVAIFGSTCSPSSAQYVKNCNAKDFAGVYPRGSEAIIRHHYVDDYLDS
FT                 FGTIEEAVTVGREVKEIHAKGGFEIRNFLSNEPEIARSIGAQSTAMDRIFQ
FT                 TGKEECAESILGMRWIPGSDHFTYSLELREGLQQILVETHIPTKREVLRIV
FT                 MSLFDPLGLIAFYLIHGRILMQDIWASGIDWDDTIKSELFERWRLWCSYLP
FT                 QLSLLRIPRCYYAGATQNTYSTLQIHVFVDASELAYSSVVYFRVTSYSGVD
FT                 TVLVSAKSKVAPLKMLSVPRLELQAAVLGTRLLNNVIDMHKLQVTKRILWT
FT                 DSRTVLAWINSDHRRYHQFVGFRVAEILSTTEAVEWRWIPTKSNVADLATK
FT                 WGSGPDLNETSVWFRGPEFLRQPEDTWPRLQKQLPATSEEVRMCNVHVSTS
FT                 EQVVKVARFSRWERLQRTLGYVHRFVDNIKRKRQGIPLESGILTQAELIVA
FT                 EKSLWKIAQQEYYFDEVEELGKNSYKTVSKSSKIYKLCPFLDKFGVLRMRG
FT                 RLDLAPYMPYEAKFPAILPQQSSITWLLTDWFHRRYQHANRETVINEMRQR
FT                 FQIPKMRALVSKVEKSCMWCRVSKTVPNTPAMAPLPKVRLTPFVRPFTYVG
FT                 LDYFGPVLVKQGRSNVKRWVALFTCLSIRAVHMEVVHTLSTESCILAIRRF
FT                 VARRGPPAEIFSDNGTNFHGANNILKQQITERNKTLAAIFTNGNTKWSFNP
FT                 PGAPHMGGVWERMVRSVKMAIGTFIHATRKPDDETMETVIIEAEGMINSRP
FT                 LTYIPIESADQESLTPNHFLLGSSTGVKQLSVLPMEYRSTLRSSWKLAQHL
FT                 ADGFWRRWLKEYLPVISRRSKWFDNVRDIAVGDLVLVVNGAIRNQWIRGRV
FT                 EKVIPGADGRIRQAWVRTAGGLHRRPAVNLALLDVSEDGELSQVIRGRSRE
FT                 G"
XX
SQ   Sequence 5932 BP; 1724 A; 1300 C; 1491 G; 1416 T; 1 other;
     tcctataaaa atcttcatcg attcctccag catggcaact tcgaaagtga acgatccaca        60
     agggcaaaga agctgcacgg catgcaaccg ccccgaccac atcgaagaca tggtggcgtg       120
     cgatgattgc aatacttggt accattacag ctgtgccaaa gttgatcata cgatcatgga       180
     ccagtcgtgg aagtgtcatc cctgtggact catctctaaa accgttgtgg cgacaaacgt       240
     aggagtcggt gcaaacctga acgttcccac cggagcgaca aagaagacaa cacgatcagc       300
     gggtagtaga gcaggttccc ataaatcgaa gaagacaaat gccagtaaaa ccgtgagtgt       360
     ttcgtctagt gcacgagcac gtcttgcgct agaactagag gttctgaatg aacagcagca       420
     tttagaagag ttagagttag aggaggagaa acagattagg gccaagcaaa ttgcccaaga       480
     gaagttgatt agggaccgcg agctagagat agaggctaag aaactagcgg aggaaaaagc       540
     atttcttgag aagaagactg ccgaggagtt aagatttcgt agaaatcaga tggctatcaa       600
     gaaaaaatct ttagaggaaa aggctaaact tatccgggaa cagtcacaac gcggaagtag       660
     tcgggcgtcg agcgtcagtc atagtgaatc tgagctgagt gtaaaggtga agaagtggtt       720
     ggaaaattcg gaacaacatt ctgcctcgaa tgatcctact aacagggaac tagtgaattc       780
     tctccaggag cttgggttga cgccgcgata tagcgggcaa cagacgacgg attttgcagc       840
     taaactagtg ggcaaggaaa ctccgactga aggaaatcaa gaacggaacc tgttaacaac       900
     ggagggaaat aacaaggaag ctgatggagt ctccgagtca atatgtgtgc cacgccaccg       960
     agaaggcgca gagaacgaga ctccacgcgt aatggaatac caaaccgagg acggtcctac      1020
     gaatcgccaa cttgccgccc gccaagtcat gggtaaagat cttccagtgt tctcgggcaa      1080
     cccagaagaa tggccgattt gggtgagcaa ttttgaaaga tctactacta cgtgtggatt      1140
     ttctcaggat gaaaatttga tacgattgca acgttgcctt aaaggacccg ctttggaaat      1200
     ggttcgtgga aggctcctaa ccccagcaag tgtgccacat gtgattaaaa cattacagtt      1260
     gcgttatggt cggccagaaa ctttgattcg ggcgctcacg gaaaagatac ggaatttgca      1320
     accgccgaag atggacaatc tggagagtat catcgatttt gggatggcag tagataacct      1380
     cgtggagcac ctgaaaaccg cgggacagaa tgcgcatttg atgaacccct ctcttcttca      1440
     tgatttggtt gctaagttac cggtggagta cagaatgaaa tgggcagcat ataaaggcgc      1500
     tagggtcaat gctgacctga ggatctttgg aacatttatg aattctatcg tggagctagc      1560
     gtttgatgtg gcggatgatc atccagtgag caaaccgttc aaagcacagc agaaacccag      1620
     agagcgtggg tacgcacaga ctcattccga atcaccatat acggaggaaa tcgtttcttc      1680
     gaatagccta acccatgcgg aaaagtccca caaaagggct tgtgcagcgt gcggaacaga      1740
     aggtcatcgt gttcacgatt gtgagcaatt cagatcactg aacgtcgacg acagactcaa      1800
     gattgtcaat cagaattcgt tgtgtaggac ctgtttaaac cagcatggta aatggccttg      1860
     tcgaacctgg caaggttgtg gaatttcagg ctgtcgcttg cggcaccata cgctgttaca      1920
     tgcttcgtcg ccagtcatgt ccattgcagt atctactagt catctggatc aaaaacaatc      1980
     tgttgatggc cctctgttca gaattttacc ggtcacactc tacggaccaa gtggaaaggt      2040
     tgatattttt gcatttattg acgaaggatc tcaactaaca ctcatagaga atgaaatagc      2100
     ttcgaaactt ggaatttccg gaccctgtga accccttcag ttgttatgga cgagcaacat      2160
     cacgcgcaac gaagctgatt ctcaacgact tctgatggat atagctggct cgcaaggttc      2220
     gcagttcaag cttgtggatg ctcggacggt cggaaaatta atgctcccag ctcagtcgtt      2280
     gaattaccag agtctggctg aaaaatatca ccatcttcgt ggtcttccaa taaaggatta      2340
     tgaacaagtt gttccaaagt tactgattgg tcttgacaac ctgaaactta caataccgct      2400
     gaaaatccga gaaggaggtt ggagtcatcc catggcagcc aaatgtcgtc ttggttggag      2460
     catctatgga tgttccccta gtgaggccat accggtcact tgtgggtttc acgttggagg      2520
     atggaccaat cacgagcaag aattaaatca gctagtccgt aactatgtag ctttggataa      2580
     ctctggaatc gtatcaccag cgactctgtt ggaatctgaa gaagatcaac gcgcacgtga      2640
     aaaaatggaa ttgactacta gaagaatttc tactgggttc gaaaccggtc tgctctggaa      2700
     aacggacaac gtaaggatgc caaatagtta tggaatggcc tatagacgac tccgcagtct      2760
     cgagagaaaa ctcagcaaca acgaacagct ttatgaaagt gttcgtacaa ttatactcga      2820
     ttacttagca aagcaatatg ctcacgaagc cacgagacat gagcttacta ctaccaagcc      2880
     agagaaatgc tggtatctgc cgctaggggt agttgtcaac gctagaaaaa acaaggttcg      2940
     attgatcatg gatgcgagag ctacggtgga cggcgtgtcc ctcaactctt ctttgctgaa      3000
     aggtccagac atggtaacgt cgcttccagc agttctgtgt aacttccgca tgtttcagtt      3060
     tgcattagca gccgatataa aggaaatgtt ccatcgcatt aaaatacgtg aagaagatag      3120
     gcaattccaa agatttctgt ggcgtgatcg accggacatt gaaccaacta tatttgtgat      3180
     ggacgttgca atcttcggat ccacgtgttc accgagttca gcacaatacg tgaagaattg      3240
     taatgccaaa gatttcgctg gtgtttatcc aagaggatcg gaggcaatca ttcgccacca      3300
     ctacgtcgac gattatctcg acagctttgg aacgatcgaa gaagccgtaa cagtcggtcg      3360
     ggaagtgaag gaaatccatg caaaaggtgg atttgaaatt cgaaattttc tgtccaacga      3420
     acctgaaatc gctaggagta taggagcgca atcaacagca atggatagaa tttttcaaac      3480
     tggtaaagaa gaatgcgccg aatcaatact gggtatgaga tggatccctg gaagtgacca      3540
     tttcacgtac tctctcgaac tgcgggaagg cctacagcaa atattggtcg agacacacat      3600
     tcctaccaaa cgtgaagtgc taagaattgt tatgagcctc ttcgaccccc taggtttgat      3660
     agcgttctac ttaatccacg gaagaatcct tatgcaggac atatgggcct ccggcattga      3720
     ctgggacgac accatcaaaa gtgaattgtt cgaaagatgg agattgtggt gcagctatct      3780
     accgcagtta agcttgctcc gtattccccg ctgctactac gctggtgcca cccaaaacac      3840
     ttactccacg ctgcaaatac acgtttttgt ggacgctagt gaactagcgt attccagtgt      3900
     cgtatacttc cgagtgacta gctattctgg agttgacacc gtgttagtgt cagcgaaatc      3960
     gaaggttgcg ccgcttaaaa tgctctccgt tcctcgtcta gagctccaag ctgcggtcct      4020
     aggtacgaga cttctgaata acgtcataga catgcataag ctccaagtaa ccaagcgaat      4080
     actttggacc gattctcgga cagtattggc ctggataaat tcagatcatc gcagatatca      4140
     tcagttcgtt ggctttcgtg tagcggaaat cttgtctact acggaagcag ttgaatggcg      4200
     gtggattcct actaaatcga acgtagcaga ccttgccacg aagtggggat cgggacccga      4260
     tcttaatgaa actagtgttt ggtttcgcgg tccggaattc ttacgtcaac cagaggatac      4320
     gtggccccga ctacaaaaac agcttccagc aacctcagaa gaggtcagaa tgtgtaatgt      4380
     tcatgtttcc acatcagagc aagtggtcaa agtggctcgc ttcagtcgtt gggaacgcct      4440
     tcaacgaaca ttaggatacg tccatcgctt cgtcgataat ataaaacgga aacggcaagg      4500
     aattccgcta gaatcgggaa tccttactca agctgaattg atagtagccg agaaaagttt      4560
     atggaagata gcgcaacaag aatactactt cgatgaagtg gaagaacttg gcaaaaactc      4620
     ttacaaaacc gtatcgaaat caagtaaaat ttataagctt tgccccttcc tggataagtt      4680
     tggagtactt cgtatgaggg gccgacttga tcttgctcca tatatgccgt acgaagcaaa      4740
     gtttcccgca atacttcctc aacaatcctc tatcacgtgg ctgttaacag attggttcca      4800
     tcgccgttat caacacgcca atcgagaaac ggtcattaac gaaatgcgac aacgttttca      4860
     aattccaaaa atgcgtgcat tagtgtctaa ggtggagaaa tcctgcatgt ggtgtcgtgt      4920
     atcgaaaact gtcccgaata caccagcgat ggctccattg ccaaaagtac gtctcacgcc      4980
     atttgttcgt ccctttacat atgtgggcct cgactacttt ggaccagtac tggtgaaaca      5040
     aggtagaagc aatgtcaaga gatgggtagc gttgttcacc tgtctgagta ttcgcgcggt      5100
     tcatatggaa gtggttcata ctctatcaac agagtcttgc attttggcga tacgaaggtt      5160
     cgttgcacgt cgtggtcctc cagctgaaat attcagcgat aacgggacga attttcatgg      5220
     agcaaataat atactgaaac agcagattac agagcgcaac aaaaccttag ccgctatctt      5280
     caccaatggt aatacaaagt ggtcctttaa cccacctgga gctccccata tggggggagt      5340
     gtgggagcga atggtccgct cagtaaagat ggccatagga acgtttatcc atgctactag      5400
     gaagccggat gacgagacga tggaaacagt tatcatcgag gccgagggaa tgataaactc      5460
     gcgaccgttg acttacattc ccatagaatc cgccgaccaa gaatcactta ctcccaacca      5520
     tttcttactc gggagctcaa ctggagtcaa gcaactttct gtgttaccaa tggaatatcg      5580
     ctcgaccctc agaagcagct ggaagcttgc acaacactta gcggacggwt tttggaggag      5640
     gtggctaaag gaatacctgc cagtaatatc gcgacgatcg aaatggtttg acaacgtgag      5700
     ggatattgcg gttggcgact tggtgctagt cgtgaacgga gctattcgga atcaatggat      5760
     aagaggacgg gtcgagaagg tgatacccgg cgcggatgga aggatccgtc aagcatgggt      5820
     gaggacggct ggaggattgc atcgccggcc agcggtgaat ttggcgctgc tcgacgtcag      5880
     tgaagatggt gaacttagcc aggttatccg gggacgttca cgggagggag ac              5932
//
ID   BEL-725_AA-LTR repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-725_AA-I;
KW   BEL-725_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-656
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-656
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 367-367 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 656 BP; 228 A; 114 C; 105 G; 209 T; 0 other;
     tgtgacggcg aacagctcta actgcggata ctgctttcgc attatttgca taggaccttc        60
     agggtcaata cgtcaccgcc gtcaaaggat gatgatgtag cgttattacc aaaacaatcg       120
     tgcaagtggc tgaacgaatc tccgcaaatc ctaatattac cacaatattt ttctccaact       180
     gaactcttta aaattagtta atttcgctga attctaattg gtagttttcg aaactgtcta       240
     ttcgtgagtg aaaattgttg aactaaacat aaaacaacta gtttactaac ttaaattttc       300
     tattttcatg ggtacagaat ttattatcct atttacaagc gttaagcaca aacacattaa       360
     aatactattt tttcaatcac gtttaaacaa acactgtaag taaatctaaa aactatttgc       420
     taaaagtaaa aataatcatg ctttgtatcc taaaacgttg tacatatcag gtaaaacata       480
     acctagaagc tgttagctaa gagaggaatt caggtgaagt gagttactga agatttgtaa       540
     gtaattaagg ctattcatgc actaaatatt aagctaatca ataaatacat ttcagttata       600
     gttgccctga aactacagtg tttgtggttc cgctgctaag aaattcggtt caaaca           656
//
ID   BEL-726_AA-I repbase;    DNA;    INV; 6313 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-726_;
KW   BEL-726_AA-I; BEL-726_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6313
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6313
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           849..6221
FT                 /product="BEL-726_AA-I_1p"
FT                 /translation="MATEQQLSFRRDTILASLGRAEAFLSGYVAERDAAQL
FT                 QLRISHVDNIWASLEAVQAQLEDLATTHEGRAMHASVRAEYEPRLFAIKSS
FT                 LISKLPTPTSSNARNPCSAHVNSALSGIKLPTISLPEFDGDYQKWLTFHDT
FT                 FVALIHSNAEVPDIQKFHYLRAAVKGEAAQIIESISISSANYNLAWEALKG
FT                 RFSNEYLMKKRHLQALFDIPRMKKETAVTLHSLVDEFERHTKILQQLGEPT
FT                 TSWSSILEHLLCTRLHDDTLKAWEDHASTVENPDYTCLIEFLQRRMRVLES
FT                 ISVNHHAPSGSAPPTVTSSKKQQQIVHLSSCSSTASTSKRCPACNQPHPLV
FT                 RCFKFQRLPLSDRQQIVHAKRLCLNCLKVDHSFRNCPSEMNCRHCNRRHHT
FT                 LLHSSSPDLSRKPSNSNTTMVPTSSVAPAAQSSSTSSASSEQSLVTATELS
FT                 PIVEASAPLQHPRENVFLLTVMLHIVDAFGEEHPARALLDSASQPNLITER
FT                 LASTLRLRRSNVNITVQGAGKVSKPVRQSVYTEVRARNQQFSCGVNFLVMD
FT                 KVTADLPSQTVSTLGWNIPKDLVLADPSFNESQPVDLVLGAKHFYSFFPSA
FT                 ARLQLANNLPILVESVFGWVVAGSSSLVHPPSMPCALQSSSVAISMVSLEE
FT                 SIERFWKSEELVLTDGYSVEERQCEALYQSTVTRNEEGRYIVRMPRQADFP
FT                 ILLGASKSNAFRRFELLEKRLERDPKLKADYHAFMREYVDLGHMREIDEDE
FT                 EEPPVAHYLPHHPVFKDSSTTTKVRVVFDGSAKTSTGYSLNEALCVGPVVQ
FT                 DDLLDIMIRFRTYKVAVVGDIAKMYRQVLLHPDDRSLVRIFFRFSPQSPIR
FT                 IYELQTVTYGLAPSSYLATRTLQQLADDEGHAYPLGGPALRKNFYVDDFIG
FT                 GAQTVEEAIHLRSEMSELLGKGGFELRKWTSNELLVLQGLKNDQIGTQSLL
FT                 QFSPNETVKALGICWEPESDTLRFDSMIHLSDEPPTKRAILSCISRLFDPL
FT                 GLIAPVIVKSKLLMQELWMLSCGWDDPVPEYVRQKWNSIRCELPSISTYRI
FT                 DRFALLSNATVQLHVFSDASEAAYGACIYARCEDTVGEIRISLLASKSRVA
FT                 PLKRVSLPRLELCAAVLGAHLYDRIRKAISIEVAASHFWSDSAITLQWIRS
FT                 PPNCWKTYVANRVSEIQHFTHGCTWNHVSGCENPADLVSRGMTVDDFLRSK
FT                 LWQCGPDWLAHPEQNWPISTPLAVSDADLEIRTVAATVTSALSVNPIFERW
FT                 SSYPRLLNTIGYCLRFVDNCRSKPRTHPPNSSRPITISLSPKKLEEAKILL
FT                 IRLAQDDGFASEIKKLQQTNTVEKKSPLRKLSPFLDSDGVLRVGGRLNLSN
FT                 LPYQAKHPALLPKLHPLPRLIAKHLHKKLLHGGGRTLLTALREQFWPIDGR
FT                 RLARSTVRNCFKCYRLDPVPAQQQIGQLPASRVLPSRPFSIVGVDYAGPFY
FT                 LKPIHKRAAPTKAYLSLFVCFATKAVHLELVCELSTSAFLAALRRFISRRG
FT                 RPTHIYSDNGKNFVGAMNDLAQLFSMLSDANQYEAITSFCASEGITWHLAP
FT                 PKAPHFGGLWESAIKVAKKHLFREIGSSRYSYEDLCTLLAQVEAIMNSRPL
FT                 LPMTEDPNDLAALTPAHFLIGSSLLALPDPDLRHVPNSQLDQYWKLQAHIQ
FT                 RFWNHWQHEYLQELQKDTRCYTLNEEILPGKLVIVVDEQQPTTRWPLARIV
FT                 EVHQGNDNITRVVSLRTAKGIIKRPIVKICLLPFTTGTPDEEVKAPLPDQP
FT                 RQLIHTPDEAAENLKTISNK"
XX
SQ   Sequence 6313 BP; 1629 A; 1602 C; 1424 G; 1658 T; 0 other;
     taattggtgc cgtgaccagg atcccgccat tggaacgttc tcgattcgac ctggggaccg        60
     ccattaggaa ttctgaggac agttgctgca gttatcgcca ttgctccaaa ggattgattg       120
     ttagttcaag gctcgattct atcgggcgta aggtaattac cagtccgatc agatttcacg       180
     ggtaccgcag gtacgcttta gatatcgctt tcctttcttg catgcacgta ctacgtcatt       240
     catccagctg gaaaacggct actcgccagt tcgaagcctg aattcctgcc ttactgcccg       300
     gatagtgaac cagctcgacg ccatagctgg atcgtccggc gccattctag cagtgcttct       360
     tcgcatgctg agcgtcactt ctagaagcag ctattgatta ccctattcaa caagtgtatt       420
     gctggccgtt gaactttgcg acggtcattg acttcggcca ttgttccgaa gcagcttctt       480
     gttcctgata gtggtggtgc tacgcgacat tttccctgga tttttcgaga ttttcaccgc       540
     agttaaccgc cactaagaag cttgttggag atttttatac agtgcgatcg cccagtgagc       600
     cgcgttaatc aaccttctgt ggcatttttg gcggttttcg cctgtttttc ctcaagcctc       660
     gcttgacgcc ctccttcgac ggatcaagta cgaaagcagt tcgtgctgga aatactgatt       720
     attacaaggc atagtttgcc ttggaagagg tgagtacctt tccaagtgcc tacgtttacc       780
     tcttgggatc taccgtggtg ttctttttcc cagatcggcc gccagtttca ccaaacaacc       840
     gttcgttcat ggctacggag cagcagctta gcttccggag ggacacaata ctcgcatcgc       900
     tgggtcgggc agaggctttt ctgtctggat atgtagccga aagggacgca gcgcagttgc       960
     aactgaggat cagccacgtc gacaatatct gggccagctt ggaagctgtg caagcgcagc      1020
     ttgaggacct tgcaacgacg catgaaggta gggcaatgca tgccagtgta cgtgcggagt      1080
     atgagccgcg cctttttgca ataaaatcaa gcttgatatc taaattgccg actcccacct      1140
     cttctaacgc tcgcaatccc tgctccgctc atgtaaactc tgctctttct ggaatcaagt      1200
     tgccgacaat ttcactaccc gaattcgacg gagactatca gaaatggctc actttccatg      1260
     atacttttgt cgctctcatc cactctaatg ctgaagtgcc cgatatccaa aagttccact      1320
     acttgcgcgc agctgttaaa ggggaagctg cacagattat tgagtcaatt tccataagct      1380
     cggccaatta caatcttgcg tgggaggcat tgaaaggtag attttccaac gaatacctaa      1440
     tgaaaaagcg gcatttgcag gcacttttcg atatccctcg aatgaagaaa gagacagcag      1500
     ttacgcttca tagtctagtc gacgaattcg agaggcacac gaaaattttg cagcaacttg      1560
     gggagcctac cacttcatgg agttccatac tagaacatct gctctgtaca cggttgcacg      1620
     acgacaccct caaggcgtgg gaggatcatg catcaacggt tgagaatccg gattatacgt      1680
     gcctgatcga gtttctgcaa agaagaatgc gagtacttga gtccatttcc gtcaaccacc      1740
     atgcgccatc gggttccgct ccgcctactg ttacttcatc gaagaaacag caacagattg      1800
     tccatctttc atcgtgctcg tccactgcta gcacctcgaa acgatgtcct gcctgtaatc      1860
     aaccacatcc tttggtcaga tgcttcaaat ttcaacgcct tccattatct gatcgtcaac      1920
     agatagttca tgcgaagcgc ctttgtctca actgtttgaa agtcgaccac tcttttcgca      1980
     actgtccttc tgagatgaat tgtaggcact gtaatcggcg gcaccacact cttctgcatt      2040
     cttctagtcc tgatctcagc cgtaagcctt ctaacagcaa caccaccatg gttccaacgt      2100
     cgtcggtggc tcctgcagca caatctagtt caacttcatc ggcatcctcc gagcagtctt      2160
     tggtaactgc aactgaactc agtccaatag ttgaagccag cgcccccttg caacacccac      2220
     gcgagaatgt gtttttgttg accgtaatgc tgcacatcgt tgacgctttt ggagaagaac      2280
     atccagcacg tgcccttttg gatagcgcct ctcagcctaa tctgatcacc gagcggcttg      2340
     cgagtactct tcgtctcaga cgtagtaacg tcaacatcac ggttcagggt gctggtaaag      2400
     tatccaaacc ggtccggcaa tcagtctata cagaagtaag agccagaaac cagcagtttt      2460
     catgtggtgt caactttctt gtgatggata aggtgacggc tgatcttccg tcgcagactg      2520
     tttccacttt aggatggaat atcccaaagg acctagtact ggccgatcct tcattcaacg      2580
     aatcacaacc tgtcgacctc gttcttggag cgaagcactt ctactcgttt ttccctagcg      2640
     ctgcacgcct gcagctggcc aacaatcttc ccattttggt tgaaagtgtt tttggctggg      2700
     ttgtagctgg ctcatcttca ctagtccatc ctccatcaat gccatgcgct cttcaatcaa      2760
     gttctgtagc catttcgatg gtctccctcg aagaaagcat tgaacgtttc tggaaaagcg      2820
     aagagcttgt tctaaccgat ggctactctg ttgaagaaag gcaatgtgaa gcgctctatc      2880
     aatccaccgt gacgcgtaac gaggagggtc gctatattgt acgtatgcct cgtcaagctg      2940
     atttccccat tctgcttggt gcatcgaaaa gcaatgcttt tcgtcgattt gaactacttg      3000
     agaagcgatt agaacgagat ccaaaactta aagcagacta tcacgcattc atgcgagagt      3060
     atgttgatct tgggcatatg cgagaaattg atgaggacga agaagagcct cctgtggctc      3120
     actatttgcc gcatcatcct gtattcaagg attcaagtac aacaacaaaa gtaagagtcg      3180
     tattcgacgg atcagcaaaa acatcaaccg gatactcgct taacgaagca ctttgtgtgg      3240
     ggccggtggt acaagacgac ctgctcgaca ttatgatacg cttcagaacg tacaaggtag      3300
     cagttgttgg agacattgcg aaaatgtatc gccaagtatt actccatccg gacgaccgat      3360
     ccctggttcg aatcttcttc cgtttttccc ctcagtctcc aatacgaatt tacgagctgc      3420
     aaaccgttac atacggcctg gcaccatcgt cgtaccttgc aacacgcacg ctgcaacaac      3480
     tagcagatga tgagggtcat gcataccctc ttggtggccc agcattgcgt aaaaatttct      3540
     acgttgacga ctttattgga ggggcgcaaa ctgtagaaga agccattcac ctacgatctg      3600
     aaatgagtga gctgttaggt aaaggaggat tcgagctgcg aaagtggacg tcaaatgagc      3660
     tactagttct acagggcctg aaaaatgatc aaattggaac acaatcgttg cttcaattca      3720
     gtcccaacga aactgtaaaa gcattaggaa tatgctggga accagaatct gacacactac      3780
     gattcgattc catgatccat ctgagtgacg aaccacccac taaacgagcc attctctcct      3840
     gtatttcacg ccttttcgat ccacttggac ttattgctcc tgtcatagtg aaatccaaac      3900
     ttttaatgca ggaactttgg atgctttcat gtggatggga cgatccagtg ccggaatatg      3960
     ttagacaaaa atggaatagc attcgctgcg aacttccttc catctctacg taccgtatag      4020
     atcgatttgc tctactgtcc aatgcaactg tacaactaca cgttttttcg gatgcttctg      4080
     aagctgcgta cggagcatgt atttatgcaa gatgtgaaga cactgttgga gagatccgta      4140
     taagcctgct ggcatcgaaa tcacgtgtgg cgcccctgaa gcgagtaagc ctaccacgac      4200
     tggaactctg cgctgctgta ttgggtgcac atctgtacga tcgaatacgg aaggccataa      4260
     gcattgaagt tgctgcttca catttttggt cggactccgc tatcactcta cagtggatcc      4320
     gatctccgcc aaattgctgg aaaacctacg tagcgaaccg agtctctgaa atccaacatt      4380
     ttactcacgg ctgtacatgg aatcacgttt ctggatgcga aaaccctgct gacttggttt      4440
     ctagaggaat gacggtcgac gatttcctga gaagtaagct gtggcaatgc ggacccgact      4500
     ggctagcaca cccggaacaa aattggccga tatcaactcc tctggcagtg tctgatgcag      4560
     atctcgagat tcgtaccgtg gcagcaacag tgacatcagc cttgtcggtg aatccgatat      4620
     tcgaacgctg gtcctcctac cctcgtctat tgaatacaat tggctactgt cttcgatttg      4680
     tagataattg ccgctcaaaa cctcgaacgc atccgccaaa ctcatcgagg ccgatcacaa      4740
     tcagcttgtc ccccaagaaa cttgaagagg caaaaatttt gctaatacga cttgcgcaag      4800
     acgacggctt tgcgagcgaa attaaaaaac tacagcaaac aaatactgtc gaaaagaaat      4860
     ccccattacg aaagttgagc ccatttttag attcagatgg agtcctgaga gtgggaggtc      4920
     ggttaaactt gtcgaatttg ccctatcaag ctaaacaccc tgccctactt cctaaattac      4980
     acccgcttcc tcgtcttatt gcaaaacatc tgcataaaaa gctacttcac ggcggcgggc      5040
     gcactcttct aacggcatta agggagcagt tttggcctat cgatggaagg agattggctc      5100
     gcagtaccgt tcggaattgt tttaaatgct atcggcttga tccagtacca gcccagcaac      5160
     aaattggaca gcttcccgct tcacgagtcc tgcctagccg acctttcagc attgtcggtg      5220
     tagattatgc tggtcctttc tatttaaaac caatccataa gcgagcagct ccaacgaaag      5280
     catatttaag tctgttcgtc tgttttgcaa ctaaagctgt ccacttggaa ttggtctgtg      5340
     agttgtcaac atcagctttc cttgcagcat taagacggtt catttctcgg cgggggcgtc      5400
     cgacgcacat ctattcggac aatggaaaaa atttcgtggg agcgatgaac gaccttgcgc      5460
     aactgttctc aatgctgtcc gatgcgaatc agtacgaagc aataacgtct ttttgtgctt      5520
     ccgaaggaat cacttggcac ctcgcaccac cgaaagctcc ccattttggt ggcttgtggg      5580
     agtcagcaat aaaagtagcc aaaaagcatc tgttccgcga gattggctcc tctagatatt      5640
     cctacgaaga cttgtgcacg cttttagcgc aagtggaagc aattatgaat tccaggccgc      5700
     tactgcccat gacggaggat ccaaatgatt tagcggcgct tactcccgca cactttttaa      5760
     taggctcatc gctactcgcc ctgcccgacc cagatttacg tcacgtcccg aatagccagc      5820
     tggatcaata ttggaaactg caagctcaca tccagcgctt ttggaatcac tggcagcacg      5880
     aatatcttca ggagttacag aaagacacca gatgttatac gctgaatgaa gaaatcctgc      5940
     caggcaaact cgtcatcgtc gtagatgaac agcaaccaac aacccgttgg cctcttgcgc      6000
     gcatcgtcga ggtacatcag gggaacgaca acatcaccag agtggtatcg cttcgcaccg      6060
     ccaagggaat catcaaacgt ccaatcgtca aaatatgcct cttgccgttc accacgggaa      6120
     caccagatga agaagtcaaa gctccgttgc cagatcaacc tcgtcaattg attcacacgc      6180
     cagatgaagc tgcagaaaac ttaaaaacca tctcgaataa gtaatgaaaa ttgataatat      6240
     ctgtttcgtg ttagatgcta tgaaatgttt atgtttacgt ttgtagtttg aatgtcattc      6300
     aaggcggcgg gta                                                         6313
//
ID   BEL-726_AA-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-726_AA-I;
KW   BEL-726_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-456
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-456
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 378-378 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 456 BP; 124 A; 97 C; 104 G; 131 T; 0 other;
     tgatcgatct atatataaaa atagcttaat gtggtgcaaa cattgcatac aacttgcgct        60
     caatcttggc caatcggttt gattgtaccg gttcgcccag atcttttggc aacactgcgc       120
     acgaactttt ccgatcgatc tggctcgtcc tgcctatgtc agtatcagct gttaccactc       180
     atccagttca cttcagattt attttgctag tcgtgctgtt aagaaggaaa gtgaaagtgg       240
     aaataaagtt tgctcctaca aattgtgttc ctagttagaa taaagtacag tagtgactca       300
     aataagtgcc agtgtgtttt actgcctgct tgccgagtaa tcatgagctt gcctgcccgt       360
     gatctgcgcc gctggaattg atgattactg gaacctgaaa cgaaaaagtg acacagcgta       420
     gggagacgag cattggtctg gcggtaagaa acacca                                 456
//
ID   BEL-727_AA-I repbase;    DNA;    INV; 6103 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-727_;
KW   BEL-727_AA-I; BEL-727_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6103
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6103
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each other.
CC   Some insertions are removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           473..5857
FT                 /product="BEL-727_AA-I_1p"
FT                 /translation="MSTERRIKTLKTKQKSLLTSFSLIQNFVENYDEESDA
FT                 CEIPVRLENLNELWSEFKVIQSELETLDESSVDAQLKQRTEFETVYYRVKG
FT                 FLLSHNKTPPTPTINASSSSISHFPGSSSHVRLPDVKLPVFNGNLDNWLNF
FT                 HDLFVSLVHASQDLSSIQKFYYLRSSLAGDALKLIQTIEISANNYTVAWNM
FT                 LVDHYQNPIRLKQTYLDALFEFATLKRESAPELHSLVEKFEANVKVLKQLG
FT                 EKTEFWDIILIRMLSVRLDPTTRRDWEEFSSAKPEVMFKDLTSFIQRRVNV
FT                 LQTLQGKIVDASSSNQHTKKPIQRFVTSHGANQVQSSRKCVVCSEHHPLYL
FT                 CQTFSKLEVGAKEKEVRRHQLCRNCLRKGHQARDCSSSSTCRKCKGHHHTQ
FT                 LCTSENPAAVHSRATESTQPAFDSSFVSRELPKPSISATSIAPTSYATAGQ
FT                 TRSVLLATAIVKLVDNCGNEHTARALLDSGSECCFITESLSQLVKAQRIKI
FT                 SVPISGIGQSTTYARYKIKASIRSRVTNFCTTAEFLVLPKVTIDLPSASFD
FT                 VSNWKIPPEVQLADPFFHEPKPVDIIIGAEIFFDLFKVSGHIQLGESFPTI
FT                 TNSVFGWLVSGKTPQIGFSKPAIVANIATVAEVHQIIERFWTIEEDNSSTN
FT                 YSIEETACEENFRRNVKRNAEGRYIVRLPVKEHILNQLGDNRRTAVRRFHM
FT                 LEGRLGCNSELSDQYTAFIDEYLALGHMRQVYDYQSPPSPCYHMPHHAVIR
FT                 EESTTTKLRVVFDASCKTAEGPSLNDALMVGPTVQQDIRSIIMRSRTHRVM
FT                 IIADAKQMYRQVLVDERDTPLQRIVWRQSPDQPLNTYELQTVTYGTASAPF
FT                 LATRVLLQLANDEQQHFPEAAKVLRNDFYVDDLFSGARSVKEAIQLRHQLE
FT                 ALLSKGGFQLRKWASNEEAVLEDLATENRALQTSVDLDRNQTIKSLGLHWE
FT                 PGSDQLKYKIQIPSESSTQQLTKRIALSQIARLFDPLGLLGPVVISAKIFM
FT                 QALWTLTDDNGKPWSWDEELPLQLKERWYTYMSDLPRLNSLRINRFVLTVE
FT                 PAYIQYHFFSDASQQAYGACCYIRTADVSGKFKVALLTAKSRVAPLKQQSI
FT                 PRLELCGALLAAELYLKVSQSLELSGAVFFWVDSMTVISWLKATPSTWTTF
FT                 VANRVSKIQHATQNCSWNHVSGQENPADLLSRGITAENILENKLWWQGPKW
FT                 LQLAQTSWPFDHPDSALCAEALTEAKKRSKISYAATPEPTFMDQLTSKFSI
FT                 HDRLLRVIAYCLRFIQNCRRTPISNKRNSNTIYVTTEETKAAELIVIREVQ
FT                 RETFSEEWKQLEKSKQVSIKSRLRWFHPFLSDDQVMRIGGRLKHSLQPFDS
FT                 KHQLILPASHTLSKLLVRTLHERHLHAAPQLLITVLRLRYWITGARNLARS
FT                 VVRNCVTCTRAQPQLLEQFMAELPTPRVTASRPFSVTGIDYWGPITIKPVH
FT                 RRASPGKAYVAVFVCFSTRAVHLELVIDLSTAKFLQALRRFVSRRGLCSDL
FT                 YSDNGRNFLGAANELRSLVDSNTHQQSIAQECAKNGIRWHFNPPKGSHFGG
FT                 LWEAAIRSAQKHFIRVLGNNTLAADDMETLLTQIECCLNSRPIIPLSDDPS
FT                 DCELLTPGHFLVGSALKAVPDTDVTEIPLNRLRQYQQIQKLFQLIWKRWHL
FT                 EYLSELQPRTKWYNPPISIQRNQLVLLKDENTPPMSWPTARIVDTHPGSDG
FT                 IIRVVTIQTSTGQYTRPISKICLLPIPPPQSSEETNGVPNTECTSTTASGI
FT                 DNAVVMHHPSGHNRPSADGSHPDS"
XX
SQ   Sequence 6103 BP; 1698 A; 1582 C; 1252 G; 1571 T; 0 other;
     tctggtcctt cgagccggat taggacgtcg attctccgtc cgttctggaa ccttctcgac        60
     tagtgagacg agctgccatc attgccataa cccgacgcac gtaggaaccg ccatatcgaa       120
     tcgctgaggc gctggactcc gccataactg aaagctgact ggataatggt acaaggctca       180
     tgctagcctt gaataaggta attagcattc cattaacatt actgttaccc ttttgagcta       240
     cgcggtcttt cgctttccag acccggctca cctatacgcg aattgcttcc ttcatcttgg       300
     agcggatacc cacatcatta cactggtatc cgtcagagtt cctgcttgct gttcaatact       360
     aatacaaggc acacaattgc cttaagtaag gtaattgcat ttcctaaaca gttagccgat       420
     ttccggggtg atctgcgcgg ttttttggtt tcagatcccg ctgctgacca caatgtccac       480
     ggaacgccga atcaaaacgt tgaaaacgaa acagaagagt cttctgacgt cgttttccct       540
     catccaaaat tttgtggaaa actacgatga agaaagtgat gcctgcgaga ttccagtgcg       600
     actggaaaac ttgaatgaac tttggtcaga gttcaaggtg attcaatccg aacttgaaac       660
     tctcgacgaa tcatccgtcg acgctcagct aaagcaacgg accgaattcg aaacggtgta       720
     ctaccgtgtg aagggattcc ttctctccca taataaaacg cctcccacac cgacaattaa       780
     cgcttcttct tcatcgatct cgcatttccc tggatcgtcg tcacatgtgc gcttgcccga       840
     cgttaaactg ccagtcttta atggaaatct tgataattgg ctgaatttcc atgatctttt       900
     cgtttcgctg gtacacgctt cgcaagacct ttcgtcgatt caaaagtttt actatctgcg       960
     atcatcttta gctggcgacg ccctcaaact aatccaaacc atagaaatca gtgcaaacaa      1020
     ttacaccgtt gcttggaaca tgcttgtcga ccattatcaa aatccaattc gcctaaaaca      1080
     gacgtatctc gacgcccttt tcgagtttgc tacactcaaa cgggaatctg cacccgaact      1140
     ccattcgctg gtagagaagt ttgaagctaa tgtcaaagtc ttgaagcagc ttggagaaaa      1200
     gactgaattt tgggatatta tactcattcg catgcttagt gtccgcttag atcccactac      1260
     tcgacgagac tgggaggaat tttcgtccgc caaacccgaa gtcatgttca aagacctaac      1320
     gtcctttatt cagcgaagag taaacgttct tcaaacgctt caagggaaga tcgtcgatgc      1380
     ttcttcatct aatcagcata caaaaaagcc tattcagcgt ttcgttacta gccatggagc      1440
     caatcaagtt caatctagcc gaaaatgcgt cgtgtgctct gaacatcatc cattgtacct      1500
     gtgtcagacc ttttcaaaac tggaagtagg agctaaagag aaggaagttc gtcgccacca      1560
     actctgccgc aactgtctac gaaagggaca tcaagctcgg gactgttcgt catcaagcac      1620
     ctgtcgaaaa tgtaaggggc atcaccacac ccaactgtgt acttcagaga atcctgctgc      1680
     tgtgcactcc agagcaaccg aatcaactca accggcgttt gattcttcct ttgtatctcg      1740
     tgaattaccc aagccgtcga tttccgcaac ctccattgca cccactagtt acgctacagc      1800
     tgggcaaact cgaagcgtat tgctagccac tgccatcgtt aaattggttg ataattgtgg      1860
     caatgagcat actgcaaggg cgcttctcga ttctggtagt gaatgctgct ttattaccga      1920
     atctctctca cagcttgtga aagctcaacg aattaaaata tccgttccca tttctggcat      1980
     tgggcaatca acaacatacg cacggtacaa aattaaagcg tcgattcgct cgagagtcac      2040
     caacttctgc accactgccg aatttttagt gctacccaaa gtcactattg atcttccgtc      2100
     cgcttcgttc gatgtgtcca attggaaaat acctcctgaa gttcaacttg ctgatccctt      2160
     tttccatgag ccaaaaccgg tcgacataat tatcggcgct gaaatcttct tcgacctgtt      2220
     taaagtgtct ggccacattc agctgggaga atcgtttcca acaattacca attccgtctt      2280
     cggttggcta gtttcgggta agacgccaca aataggattc tcaaagcctg caattgttgc      2340
     aaatatcgct acggttgccg aagtacacca gatcatcgaa cgattttgga caattgaaga      2400
     agataatagc agtacaaact attccatcga agaaacagct tgcgaagaaa actttcgtcg      2460
     caacgtgaaa cgcaacgcag aaggtagata catcgttcgt ttacctgtga aggaacacat      2520
     tctcaatcaa ctcggtgaca atcgtcgcac tgctgtccga cgattccaca tgctggaagg      2580
     tcgtcttggt tgcaactcgg agctttcgga tcaatataca gcattcattg atgagtacct      2640
     tgccttgggc cacatgagac aagtgtacga ttaccaatct cctccatcgc cttgttatca      2700
     catgccacac cacgctgtta ttcgagagga aagcactacg acaaaactgc gagtcgtatt      2760
     cgacgcatca tgcaagactg ctgaaggccc atcgctcaat gatgcactta tggtaggacc      2820
     gaccgtgcaa caggatatcc ggtctataat tatgcgctct aggacacacc gagtcatgat      2880
     catcgccgat gctaaacaaa tgtatcgaca agttcttgtt gatgagcgcg atactccgct      2940
     ccaacgaatc gtatggaggc agtcacccga tcagcctctc aacacctatg aattgcagac      3000
     ggtaacctat ggcactgcaa gtgccccttt cctcgccaca agggttctat tacaactagc      3060
     caacgatgaa cagcaacatt ttccagaggc agcgaaagtt ttacgaaacg acttctatgt      3120
     agacgatctt ttttcgggag caagaagcgt caaagaagct attcaactac gccaccagct      3180
     tgaagcactt ctctctaaag gaggatttca actccgtaag tgggcatcta atgaagaagc      3240
     tgtactagaa gatttagcta ctgaaaatcg agccttacaa acttcggttg atttggatcg      3300
     caaccaaaca atcaaatctc ttggtttaca ttgggaacct ggttcagacc aattgaaata      3360
     taaaatccaa atccctagtg agtcgtccac acaacagcta actaagagaa tcgctctttc      3420
     acaaatagca cggctttttg atcccctcgg tctactaggt ccagttgtta tatcggcaaa      3480
     aatattcatg caggcattgt ggacattgac ggatgacaac ggcaagcctt ggagttggga      3540
     cgaagagcta ccacttcaat tgaaagaacg atggtacact tacatgtcag atctgccgcg      3600
     ccttaacagc ctacgaatca atcgatttgt actaacagtc gaacctgcat acatacaata      3660
     ccactttttc tctgacgctt ctcagcaggc atatggtgca tgctgttata ttcgaactgc      3720
     agacgtatct ggtaaattca aggtagctct tcttacagca aagtctagag tagcaccatt      3780
     aaaacaacag agcattcctc gactcgagct ctgtggggca ctccttgctg ctgaattgta      3840
     cttgaaagtg tctcaatcat tagagctctc aggggctgtt ttcttctggg tcgattcaat      3900
     gacagtcatc agttggctga aagcgacacc atcaacttgg accactttcg tcgcaaaccg      3960
     tgtatccaaa attcaacacg cgactcagaa ctgttcctgg aatcatgtat ctggacaaga      4020
     aaatcccgca gatttattgt ctcgcggtat aacggcagaa aatattcttg aaaacaaact      4080
     ctggtggcaa gggccaaagt ggttgcaact tgcacaaact tcatggccat tcgatcaccc      4140
     agattcggct ctttgcgctg aggcactaac agaagctaaa aaacgatcga aaatttcata      4200
     tgcggcaact ccagaaccca catttatgga tcagcttacg tcaaaattct ctatccacga      4260
     ccgcctattg agagtaatcg cctactgtct gcgcttcatt caaaattgtc gtcgaacacc      4320
     aatcagtaat aaacgaaata gcaacacgat ctacgtcaca acagaagaga cgaaagcagc      4380
     agagttgatc gtgattcgtg aagtgcaacg agaaacgttc tctgaagaat ggaagcagct      4440
     tgaaaagtcg aaacaagtat ccatcaagtc ccgtttacgc tggttccacc cattcctgtc      4500
     tgacgatcag gtaatgcgca tcggaggtcg tctcaaacat tcgcttcaac catttgatag      4560
     caagcatcaa cttatcctcc ctgcttcaca taccctatct aaattgctcg tgcgaacact      4620
     ccacgaacgt catttacatg cagccccaca actactgatt accgttttac gcctaaggta      4680
     ttggatcaca ggggccagaa acctggccag atccgttgtt cgcaactgtg tcacttgcac      4740
     tagagcacaa ccacaactcc ttgagcagtt tatggccgaa ttgccaaccc cccgtgtcac      4800
     tgcttctcga ccattttccg tgaccggcat tgactactgg ggtcccatta ccataaagcc      4860
     tgttcaccgt cgagcatctc ctggcaaggc ctacgtagca gtttttgtct gcttctccac      4920
     tcgcgcagta catttagagc tggttattga tcttagcact gccaagtttc tgcaagcatt      4980
     acggcgattc gtctcacgga gaggcctatg cagcgacctt tacagcgata atggtcgtaa      5040
     tttcctcgga gcagcaaacg aacttcgaag tttagtcgac agtaatacgc atcaacaatc      5100
     catcgctcaa gagtgtgcca aaaacgggat ccgctggcac tttaatccac cgaaaggttc      5160
     ccactttggt ggcctatggg aggctgctat tcgttccgcg caaaaacatt ttatccgtgt      5220
     acttggcaat aacaccctgg cagcggatga catggagaca ttgttgacgc aaatcgaatg      5280
     ttgccttaac tcgcgtccta tcataccgct cagcgatgat ccgtccgact gtgaactcct      5340
     cacaccaggt cactttctcg ttgggtccgc actgaaggct gttcctgaca ccgacgtaac      5400
     cgaaattcct ctcaaccgtc tgcggcagta tcaacaaata caaaaactgt tccaactgat      5460
     ttggaaacgg tggcatctcg aatatttaag cgaactgcaa ccgcggacga aatggtacaa      5520
     tccaccgatt tccattcaac gaaatcaact cgtccttctg aaagatgaga atactccgcc      5580
     gatgtcctgg cccactgcga gaatcgtcga cacgcatccc ggatccgatg gaatcatccg      5640
     tgtggtaacc atccaaacat ccactgggca atacactcgt ccgatctcaa agatttgctt      5700
     gttgcctatt ccgcccccgc aatcatcaga ggaaacaaat ggtgtgccca acactgaatg      5760
     cacatcaacc acagcaagcg gaattgataa tgccgtcgtc atgcaccatc cttctggcca      5820
     taatcgtccg tccgctgatg ggtcacatcc ggattcctaa aacgaaaatt ttcaaggtcc      5880
     tttagtgaaa aggacaaggt aagaacctgt ccattaatca taaaattatc ttaacccgct      5940
     accgggtctc tttttttttt ttttgtttac atcctgtaac tgagctcgtc aacatcatca      6000
     ccaaccgaga gcaacgtcac cagaagcgaa cgccgagaag aaatctgtca tcagttgtca      6060
     tcaagatcgg ctgtcagaaa tgtgatttct gaaggggcca gca                        6103
//
ID   BEL-727_AA-LTR repbase;    DNA;    INV; 529 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-727_AA-I;
KW   BEL-727_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-529
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-529
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 379-379 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 529 BP; 173 A; 98 C; 118 G; 138 T; 2 other;
     tgttcgcata cgaaaattgc atcgccacgc catctgtggg tgactagtca tcgttcgtta        60
     gcaccagcct ttttatgttg atcatcatgg ctcccttcgg aaaggtgcga tttcagtctt       120
     scggcaaccg agaaaagatg gagtaaccca tgtataaaag ccgaatgata cacgttctcg       180
     gtctcttatt tattcgacaa cacgacgcct gccgtcatca tcagcgaagg agtggacatc       240
     aacaaacaga agaactttcg tatcgagtag agtgaatttg aaatattagt agaagtgaaa       300
     tatagtaata gttagtttga aaagcaaaga aaattagttt tgagtagtgc agttagtaaa       360
     agaaataaaa gtaaacttac ctgtgaactc tgctagtgcc aagaacctaa aatmaaagaa       420
     agagaagaag aaagaactta cctggtagtg ccgtccccgt tgtgtgcagt ggtggataaa       480
     aagtgagcac agaaacacat ttcgcttcgc tctttggtgt tatcgaaca                   529
//
ID   BEL-728_AA-I repbase;    DNA;    INV; 7255 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-728_;
KW   BEL-728_AA-I; BEL-728_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7255
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7255
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 370-370 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 7255 BP; 1932 A; 1813 C; 1747 G; 1763 T; 0 other;
     ttttggtcct tcgagccgga tgaccgttgg gcgatcgaca aagtggacaa gtggacaaag        60
     tgcattgtac cgccggtcag tgacccggaa agcagtgaac aatagtgact attggcgtcg       120
     attccatcac cgccatcgtg atatgtggct caactgagtg aagaaaggca gcagaggata       180
     ttgtgcacgg tggctgacat cggtggcatc atcctgacgg cgtacatcgg ctgaacgcat       240
     ctgcccgttt gagcgatttg gagagcagcg atctggcaag cagcgatcga gcgaggaccg       300
     ttcgaggatc aatatcggct gagacaaggg aagtaaattg catgttatct gtggttgggc       360
     aatgcatgga aggcccatca agggaagtag tgagatcctc aataaaatgg tgatcgaaat       420
     ttgatctttt ctttgcatgc gaaatttgtg ttccctgaat tcattgacgg ttggtcttcg       480
     gttctgctgg ctacttttcg gctcgttttt tcacctggtt ggctcccctc cattgcagtc       540
     aaatttggtc gttctgtcct gtcaatgtgg gccgtcgagt tgagtcgcga gcgcggagtt       600
     attgtgcata gtgcattagg tgcatcgtag tgagtgcaag tgcatcagat ttgaacattg       660
     gactttggtg agcgcagtgc actttttcga attagcagac taaagtgaga tagtgattcg       720
     attgaaatac ttttgaacga ttgtttgaaa tacttttgaa aagttagtga gtgattcgag       780
     agtgattttc aaaatgtcca gtgaattgaa ggagctgaaa tcccaacaac gtcaagttcg       840
     gagtacattc gaaggtgtta ggcagttcat cgttaaattc aagcgagata agcatgaagc       900
     gcagattgat acgagattgg aaatcctgga agaggcgatg cagaagttgt atgtgctccg       960
     aagaaaaatt gaagtcgtca cggaggaagc tgatgaacgg gagttgatgg aatccaaggt      1020
     ggaaccttcg gaactaaagg ctcgtttggc agcgatcatc gagaagcgac agcttgaaca      1080
     tagtgctatt atccagcaag ctgaagacac gtactgcgaa ctgaagtcgt ctctgcaggt      1140
     tttgcgaaca aagccaattt ccggatcgtc agtggttccc actcaaacag ctccatctgc      1200
     cttgtccacg gttaagcttc cggagatccg tttgcctagt ttcgacggca aaatccgaga      1260
     ctgggtaacg tttcgtgaca tgttcagaag cctgatccac cgcaatcaac aactcactga      1320
     catcgataag tttacttatc tgaggtcatc actcgaaggc gaagctcttc gcgagatcgg      1380
     gatgatcgag atcacagcgg caaattacat tattgcctgg gaattgctgc aaaagcgata      1440
     tgaaaacaaa aagcttatcg ttaaagctca tatcgatgct ctttttgcag ttgagccatt      1500
     gaaaagagaa aactatgaaa ctctgtgcca tctcatcagt gagtacgatc ggaatcttca      1560
     aatgctggac aaaattgggg aagatacgtc aaagtggagt acaatccttg tacatatggt      1620
     ttgttccaga cttgatgcag ccaccctacg gaactgggaa actcatcatt gctccacaga      1680
     agttccaaca tacgagcagt tgatggggtt tctgcgtaaa cattctgcca ttctgcagtc      1740
     attagttcct gcgaagcaac ctccgattga agcgaagaaa cccaaattta ctgtaagtca      1800
     tgctcaaact tccgctccag catccagcag gtgtccattc tgctcggaag agatgcactc      1860
     ggcgttcagg tgtcagaaat tcatcaaaat gaagattcct gagcggtatg agagggtgaa      1920
     acggtacggg ctgtgcttga actgcctgtc ttcgtcacac atggttcgag cgtgtaccgc      1980
     tggcgtgtgc cgacactgcc agaagaagca tcattcgctt ctccactccg gaggcttcaa      2040
     cagtgcaagg gctgctgcat caacggcgca gaacgactcc tccggcccac aagttcagaa      2100
     tcgatcacag gtgacaaaca cacagcaaac acagccacat gcccagaacc aaccaacaca      2160
     aagtcagaca tctggtccca gtaccagttc atatccaatc gcaaacacaa attcgctttc      2220
     gcattcatca ccacccacca cagatctcac actaccaagc aattccctac cagccacgat      2280
     acacacctct actcgccaag ttttgctatc aacagctctt gtccgtctgt cggacaaata      2340
     tggaaatact cagctagcca gagtccttct ggattcctgt tcggaatact gtttcgttac      2400
     aacacacctc tctcaaaagc tgaagttgac tgaaacacct agtttcttgt ctgtagctgg      2460
     aatcggaggg tccgtagtta aatccactaa aaaggtggaa gcaataatag ccccacgttc      2520
     ttcccgtatc tcctcctatt cggcggacat cgagcttcat gtactcccga agctaacttc      2580
     agaattgccg ataaatccag taaatcttca ggaattggcc attccaaacg gtatcatttt      2640
     ggcggatcca aactttcaca agccaggtcc gattgatatg ataataggtg ctgagtatta      2700
     ttacgatttg cttctcgagg acaagctgaa gcttttcgac gacggaccaa cactgcaaaa      2760
     gacagtattc ggatgggttg tgtccggccg agttcccggt aaggtcgtcg aagttcctgc      2820
     aacatctacc cactcctgct ccactgttga attacgagag ctcgtcgcta agttctggga      2880
     gctggagtcc tgccatagtt ccagtacgat gtcagtagaa gagtctgtgt gcgaagagct      2940
     gttcgacaaa acgacgaagc gtggagaaga tggaaaattc gtcgtcaccc ttcccaaaaa      3000
     agagcacata atcaaccagt tgggagactc aaaggccacc gcgttgaaaa ggcttcacgg      3060
     gatggagaga cgcttcgttg gcaacgaaat actgcggaaa ctatacactg acttcgtcca      3120
     ggaataccta tccatgaacc acatgcgcga ggttgatagc ggagaagaag acaagccgtc      3180
     atactaccta cctcatcatg ccgttcttaa gcccgagagc acgacaacga agttgcgtgt      3240
     tgtgttcgac gcctcttgtc gaacatcgtc aggaacatcc ttgaacgacg gattgatggt      3300
     aggacctgtg gtgcaggatg atttgctcgc cataattctg cgttttcgtt gttgggagtt      3360
     cgtattagtc gcggacatcg ctaaaatgta ccggatggtc aaagtagcgg aagccgatca      3420
     tcccctccag cggattctat ggagagagtc gcctgatcaa cctgtaaaaa cgtacgaatt      3480
     gacaacggtc acgtacggca cggcgtcagc accatacctc gcaaccaaat gcctccaacg      3540
     gctagcaacg gaaggtgaag tttcgcatcc gacagctgcg aaagtcgtcc gcaaggactt      3600
     ttacgttgac gatttgttaa ctggtaccga cagtctcgaa gatggaaagg cactcgccac      3660
     cgatctcatc tcgctgacaa attcagcagg attcatactg cgcaagtgga actcgaacag      3720
     ttccgaactg ttgtccacga ttccagcaga acttcgagac gaacgcacca ctcttgaact      3780
     ggattcgtcg acgtcagttg ttaaaacgct tgggctcact tgggaaccgg ctaaagacgt      3840
     cttcaagttc gccgtaccat gctggagtac tgagtcaatc atcaccaagc gcgttgttct      3900
     atccgacacc gctcgcatct tcgatccact gggcctcatc agcccggtta ctgtccaagc      3960
     aaaaatattt cttcagcagc tttggaagca gaagtcagat tgggacgacg ctttaccgga      4020
     aaacttccag gccttctgga atgagtttcg tcggaacgcc ggctcgctcg aatctctctc      4080
     ggttccaaga tggacaggct tcagaagcag cttagtatcg gtggagctac atgggttctg      4140
     tgatgcatcg gaggccgctt atggtgcttg cctgtacttg cggtgcgaat catcggacgg      4200
     gtcagtcacc gtccgactca tcacttcgaa atcacgcgta gcgccgctgg aagacctttc      4260
     ccgaaaaaag aagaagcaat cgatcccacg gttggagtta tcttcggctt tacttctgag      4320
     ccatctctac gagaaatttc ggaatagcgt ccacctttca gccaatgcct acttctggac      4380
     ggactccatg atagtcaagt gctggctgtc atcacttcca tctcgttggc aaatgttcgt      4440
     tgctaatagg gtgtcagaaa tccagcatat caccaagtcg ggagtctgga atcacgtcgc      4500
     tggtgccgac aatccggcag acatcgtatc tcgcgggatg acacctgcac agttagcata      4560
     ccagtcggtt tggtttgaag gtcctttgtg gctacgccaa gaccgaacca cttggcctaa      4620
     gtcagctact gttcaaccag agttggacaa agcactgctc gaggaaaggc cagcaatatc      4680
     acttcccact caaatcaagc cacctagtcc catatttttg ctccgatcat catttccgat      4740
     gctagttcga ctcgttgcat ggattcgtcg gttcgcccac aatggagttc cgagaaaccg      4800
     agcctgcaag cgcagtggaa acctatcaac atccgagctc aacgaagctg aactacagtt      4860
     agcccggtta gcccaatcgg aaagctttcc ggcagaaatt tccgtattat ccaagaacca      4920
     acccatcagt ccatcatcga agctattagc agcaaatccc attctggtag aaggcacact      4980
     tcgtgttggc ggccggttgc agcatgctcc aataccagaa agtcgaaaac atccagtaat      5040
     ccttcaccat caacacccac tgaccagctt aataatggac tactaccatc gtaagctgtt      5100
     tcatgccgga caacaacttc tgattagctc ggtcagagag aagttctggc ctattcgtgc      5160
     ccgggatgtg gcacgccgga ctatccaccg gtgtgttgaa tgcttccgga gtaaaccaaa      5220
     ggtccatgag cagttgatgg ccgatctgcc gtctgtccgg gtcacacctg gagcagtttt      5280
     cctgaaggtc ggaatcgatt tgtgcggacc gttctacatt cgataccctg gtagaaaaag      5340
     tgcaccaata aaggcctttg tgtgtatctt tgtgtgtctg gcgaccaagg ccgttcactt      5400
     ggaggttgtg gctgatctgt caacacaagc cttcctggcg tcattcaagc gattcgttgc      5460
     cattcgtggc aaaccacagt tggtgatgtg cgacaacgca accaactttg ttggagcgaa      5520
     tagagaactc gaagtattac gtcgactgtt gaacgatcaa caagttcagc attggattgc      5580
     gaatgcagca ttagaagaag gaatcgagtt taaattcatc ccgcctcgca ctcccaactt      5640
     cggcggactg tgggaggcgg ccgtaaaatc cttcaaagga catttccgga agaccatcgg      5700
     agatagagtt ttgacctacg acgagctcca taccgtagtc tcccaaatag cagcgattct      5760
     gaattctaga ccgctgactc ctttgagcaa cgatccgaat gatttctcag cactaacacc      5820
     gggtcatttc ctggtgggta ggccgctcac gtcagttcca gaacccgatt tgggggagat      5880
     tcctgaaaat cgcctttcac attggcaacg cacgcaagat ttcgtccagc agctttggaa      5940
     aaaatggaaa acgcagtatc tctccgatct acataatagg acgaaatgga cacgacagcg      6000
     taataatgtt cgtatcggaa ccatggttgt cgtcaaagag gacaatttgc caccccagaa      6060
     gtggcgattg ggacgaatca ctgaaatttt ccctagtcag gatgggaaca tccgggtggt      6120
     tgccgtccgt actcaggatg gtgtctttag aaggggcatt tccaaaattt gcgtccttcc      6180
     tatccgggac aacgaccagg agtccccatc agaagagcag taactcttcc aacgaggtgc      6240
     ttcggcactg cggaggaccc caaatggagg ttctccgccg ttcagttaag tattagtgta      6300
     taaatagaat tcaaaaaact caaggaatgt tcatccccca tagctgcatc tacctcccgg      6360
     ttaccgggac ggtcatcttc acgaagtcat cacgttcatc cgttttccaa tccgtcaatc      6420
     gtccgttcgc atgaaggttg tcctgtatcg tcaagcgtgt tcgtccaagg ttttggtgca      6480
     ctttatgcat tcttcattca caagatttcg tcaatcacag catcaagatc atcttcgaag      6540
     aacatcccac gagcgatggg cccgtcgctc gattcgttgg tcctgcccga ccggtcatca      6600
     agcgaactga tcactcgcta cgaagcccac tgtcagtcca ggatcatcac catagacgtt      6660
     caatactaga atcatcaatc ccttcgctac tcccatgtag cagcatcgcg gtgccaggtg      6720
     gcgcccgcgg aggcccggat gcaagggcct ccgcaccagg caagttgtgt caagtttgtt      6780
     catttcatcg taaaaagctt cccatgtttt gtagaatcgt gcacctacct caggccagga      6840
     ggcctacatc aactggcggt caacaatcgt cgagagatac caggacaagc ccacgtagta      6900
     tcaagtcatt caaaccttcg catcagacga accgaagatg agccgataga agtcattcag      6960
     ttccgaagtc tctggtagat ttttcaacac cattcacgga cggtgagccc accgtcgcac      7020
     aagcagaaga tgcagtttgt ctccagtaca actcccatta gtcggtcaag gtcagcaaga      7080
     gtcgcagcag cagaacaaca acaacccgag cattcccgat accaaaccat agaataacga      7140
     attgaaaaga gtgcgaaaga tatagtggtc tagccatagt cgtaattaca ctagtgttca      7200
     aattttgaat tagttatgat aggttgaaat cccaacgatt tcaaggcggc cggca           7255
//
ID   BEL-728_AA-LTR repbase;    DNA;    INV; 406 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 24.03, Created)
DT   28-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-728_AA-I;
KW   BEL-728_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-406
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-406
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 380-380 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 406 BP; 116 A; 94 C; 78 G; 118 T; 0 other;
     tgtttgtagc taggaatgtc ggtccgtttg gcaacacaga aataagttcc acatacgaga        60
     atcatttcat cccattttaa cccatcaaat aattacccta tctcatcgat acgtaggtag       120
     ctaggtaacc ccgatcgatt cctactgatc ggtatcgttc gggtctatat tcaccactga       180
     ccatctcata tcgcatcaaa taggagaggc agttcagtta gtttcgaacc atacgtagat       240
     ctgcgtcgca ctcaatttag caaatatatc ggtcgagcaa taaaagtgca gttttacatc       300
     aaagtgcatt tcaataaacg gtcgtttttt aactacatat cggtgtcgcg agtgtttggc       360
     caatccgaag atctttcgcc aacggtcccg gtacagtatt cgaaca                      406
//
ID   BEL-729_AA-I repbase;    DNA;    INV; 6902 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.03, Created)
DT   29-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-729_;
KW   BEL-729_AA-I; BEL-729_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6902
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6902
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           633..6101
FT                 /product="BEL-729_AA-I_1p"
FT                 /translation="MGKSDLRILVKQERTLRQSLENFKQFINNYQEDRDRS
FT                 SLAMRLAKLDEVYDKFLDVRLQIEVITDDQEEANLSETVESEEERRTLRAS
FT                 IALERDRENAKVIREFENDYYRVKQLLCTLSTSAGASTVPALPATQSLPVS
FT                 ESQMRIKLPELKLPSFSGKLREWITFRDSFISMIHGNEHLAPIDKFTYLRT
FT                 SLTGDALREIASIELTAANYSIAWKTLQDSYENKKLIAKSYIDALFAVKPM
FT                 DRESYDQLNRVVGEFETNLMMLEKLGENIDGMSTILQHMVCQRLDSNTLRS
FT                 WENHYNSMEIPKYKDLINYLKEQCMVLRSIGAGRPSPGESKKSTRSSVLSH
FT                 SGVHQVVSCPFCGDQPHSAFKCNRFSKMKVSERADEAKRKSLCLNCLSPGH
FT                 IARFCTKGSCHTCGRNHHTLLHSVPPSVSPSKPGQPSATLTGKKNQLPSAP
FT                 NSPPPQSMSKNSAHSNSTSTQQSYASNEASKSLNRATSASSSQPVATDHAS
FT                 TSYNTVFSSTTQTLPNTVLLSTALINISDGQGNTTVARALLDSGSQLCFMS
FT                 ERFAQRLKVQRRRECLPVKGIGQASTCSTQSINAWISSRVSHYKVLMQFFI
FT                 LPKVTADLPLRRLDYSRWSFPRGLALADPEFHNPSAVDIIIGAEIFFDLLV
FT                 DGQHKLAEGGPILQNTQLGWIVSGKVSECSRITSSLAAFACPEEKLDDLLT
FT                 RFWELESCRTTSTLSLEESQCEKIYNETTTRDSSGRFVVTLPKKPFLIDRL
FT                 GESRSIAFRRFISLERRLDANIALKQAYSEFIHEYLNMGHMREVKVDPNVA
FT                 EQGPFPYYLPHHAVLRPESTTTKLRVVFDASCATMSGVSLNDALMVGPVVQ
FT                 EDLLSIVLRFRLHKFAIVADVAKMYRMVNIASEDQRLQRILWRDSSSEPVR
FT                 TFELTTVTYGTSSAPYLATKCLQRLAEEGALEYPVASKILSEDFYVDDMLS
FT                 GADSIDEGIKMYQELTQLLETSKFTLRKWSSNSPEILAAIPEHLKDDRTSL
FT                 ELDSSKAAIKTLGLSWEPRSDQFRFAVPQWNDSIEINKRVILSDFARLFDP
FT                 LGLVGPVVVQAKIFLQDLWKQKCSWHEPLSEDLQHWWLDFRKNLATLSTLT
FT                 VPRWLAFGSDTISAEIHGFCDASEKAYGACIYLRCTCFNGQVSVSLIAAKS
FT                 RIAPLDDVRHKRKKMSIPRLELSSALVLSHLHEKVENSLRIKAQSFYWTDS
FT                 TIVKCWLSSTPSRWQMFVANRVSEIQHLTRTGNWNHIAGSENPADVLSRGT
FT                 TPERLADHPTWWHGPEWLRSPRNFWPKEVLTESLELDQALLEEKSTVAVTI
FT                 HIQSFNDIFKLRSSFTALVRITALCRRFVFNCKHPAIAKKGYLSIQEREEA
FT                 LLTLVRIAQKDSFTEDLKTLASNEQVSPLSRLKSLHPALVNGIIVVGGRLE
FT                 NAQVSPGRKHPIILDNRHPFTLMVVEYYHRYLLHAGHQLLIASIRDRFWPL
FT                 RLKNLCRTVIHGCVRCFRIKPQIQEQLMGDLPSERVCPAPPFIRVGVDYCG
FT                 PFKIRFPHRKSDIRICYVVIFICLVTKAVHIDMVADQTTEGFIAALRRLVA
FT                 RRGRPDVVMCDNARYFIGAKRELDQLRRLFNSQAFTNSIPQAAANEGINFK
FT                 FIPPRSPNFGGLWEAAVKSLKYHLKRVVGNNVVTPDEFYTLLTQIEACLNS
FT                 RPLTPISNEPSDLEILTPGHFLVHRPLTAVLEPSLEDLKENSLSKWQKVQR
FT                 YLQIVWKKWSTSYLSDLQNRTKWVIERKNLATNMMVLLKDENQPPLRWPLG
FT                 RIVATHPGKDGKVRVVEVQTKEGLYTRAVSKICVLPILDNDNSSPANSQKD
FT                 T"
XX
SQ   Sequence 6902 BP; 1971 A; 1620 C; 1535 G; 1776 T; 0 other;
     tttggtcctg aacgaccgga ttcagagaag ccacgcgatc ggtttaaagc tgctacgtga        60
     tcgcgtcttg tttgttcgta gtcgaacaat agaacacgga cattctacaa attgtcggag       120
     cctatgctgg aactggtgtt gctgttgttg gactgttgct gctttcgctg ttgttgctgt       180
     tggatacggg gaaccattgc tgccatcata cggaccacgg aaatctgcgt acagaccgga       240
     caggccgaaa tctgtttcca gaaatcgact cgagagaagt ggacaaaggc taagtagaac       300
     aaagacgtgt gtcagtggtg ctgttctgaa ttgcatgatc agaccgccat tgcaaatata       360
     agtgattctt catggttgtg catattgtaa catcaatata ttgcttgcat gcttacaata       420
     aaattgttgc gtttcaaatc ttgtcgtctc tgctgattaa ttggagttga gccttgagtt       480
     gatctactga ttccgctgtc tttggtacct aatcattctg tggtcggtga gcaaaacttc       540
     agggttgtaa gtcctgtcaa tcgtattcat tgatcgatcc gcgcagtcaa ctatatacac       600
     ttgttgggag gtacagggag tggtagtaaa aaatgggaaa aagtgacctt cggattctgg       660
     tgaagcaaga gcgtacattg cgacaatcac tggaaaactt taaacagttc atcaacaact       720
     atcaagagga tcgagatcga agttcgctag ccatgcgatt ggcaaaattg gacgaagtgt       780
     acgacaaatt tttggatgtg cggctacaga ttgaagtaat cactgatgat caagaggagg       840
     ccaacttatc ggaaacggtc gaatcagaag aggaacgcag gactctgcgt gcatctatag       900
     ctctggagcg agatagggaa aatgcaaagg taattcgtga gtttgaaaat gattactatc       960
     gtgtgaagca attgttgtgt actctttcaa catcagcagg agcaagcact gtaccagcac      1020
     tacctgcaac tcaaagcttg cctgtttctg agtcacagat gagaatcaaa ttgccagaac      1080
     tcaaattacc ttcctttagt ggtaaattgc gcgagtggat aacgtttaga gattcattca      1140
     ttagcatgat ccacggtaac gaacatctag ctccaatcga taagttcaca tacttacgca      1200
     cgtcattgac tggtgatgca ttgagagaaa tcgcatcaat cgaactgaca gcagcaaact      1260
     actctatcgc atggaagacg ttgcaagata gctacgaaaa taagaaattg attgctaaat      1320
     catacatcga cgcactgttt gcggtaaagc ccatggacag ggaatcctat gaccaattga      1380
     atcgtgttgt tggggaattt gaaaccaatc tgatgatgtt ggagaaacta ggagaaaata      1440
     tcgatggaat gagcaccatt ttgcagcaca tggtgtgtca acgattggat tcaaacactt      1500
     taaggagttg ggagaatcat tacaattcaa tggagattcc aaagtacaag gatctcatca      1560
     actatctgaa ggagcaatgt atggttctac gcagcatcgg cgcagggcgc ccaagtcctg      1620
     gagagtctaa gaaatcaact cgttcttcgg tcctgagtca ctcaggagtt catcaagtcg      1680
     tctcatgtcc attttgcgga gatcagccac actctgcatt caaatgtaac cgattctcca      1740
     agatgaaggt ctcagaacgc gcagatgaag caaaacgcaa gtcactttgc ttgaactgct      1800
     tatcacccgg ccacatcgca agattctgta cgaaaggatc ttgtcacacg tgtggaagaa      1860
     atcatcacac tttactccac tcagtacccc cttcagtgtc accgtcgaaa ccaggacagc      1920
     catctgctac tctaacagga aagaagaatc agcttccgtc tgcaccgaat tcgccaccac      1980
     cacagagtat gtcaaaaaat tcagctcaca gcaactcaac ctccacccag caatcgtacg      2040
     catcgaatga ggcatccaag agcctaaatc gagcgacaag cgcaagctcc agccaaccag      2100
     ttgccactga ccacgcttct actagctaca acacagtttt ctcttctact acacaaacac      2160
     ttccaaacac tgttctattg tccacggctc tcataaatat tagcgatggt caagggaaca      2220
     ctacagtagc acgtgccttg ttagattcag ggtcacagct atgtttcatg tcggaaaggt      2280
     tcgcccagag attgaaagtt caacgtcgtc gagaatgctt gccagtcaag ggcattggtc      2340
     aagcgagtac atgttccacg cagtccatca atgcttggat cagttctcgt gtatcccact      2400
     acaaagtcct gatgcagttc tttatcttgc caaaagtaac tgcggatctg ccattaagga      2460
     ggcttgacta cagtagatgg agttttccca gaggattggc actcgccgat ccagaattcc      2520
     ataatcccag cgcagttgac attataatag gagcggagat tttcttcgac ctactcgttg      2580
     atggccagca caaattagca gaaggaggtc caattctcca aaatacccag cttggttgga      2640
     tagtgtcggg caaggtctca gaatgttctc gaatcacttc ttcgcttgct gccttcgctt      2700
     gccccgaaga gaaattagac gatcttctta cgcgattttg ggagttggaa tcctgtcgga      2760
     caactagtac gctgtcgctg gaggaatcgc aatgcgaaaa gatatacaat gaaacaacca      2820
     caagagactc gtcaggcaga ttcgtcgtaa cactgccgaa aaaaccgttt ttgattgacc      2880
     gccttggtga atcccgctcg attgcctttc ggcgcttcat ttcactagaa cggcgactag      2940
     acgccaatat tgctcttaaa caagcctaca gcgaattcat tcatgaatat ttgaacatgg      3000
     gacatatgcg agaagtcaag gtagatccca acgtagcgga gcaagggcct tttccgtatt      3060
     atctaccaca tcatgcggta ttgcggcctg aaagtactac cacaaaactt cgcgtagttt      3120
     ttgacgcgtc ttgtgcaacg atgtctggag tatctttgaa cgacgctctt atggttggcc      3180
     cagtggttca agaagacctc ctttcgattg tcttacgctt ccgtcttcac aaatttgcta      3240
     ttgtcgctga tgtcgccaag atgtatagga tggtcaacat tgcatccgag gatcagcgac      3300
     tacaaagaat tctgtggagg gactcatcat cagaaccagt ccgaaccttc gaactgacaa      3360
     cggtcaccta cggaacgtca tcagccccat atttagcaac caagtgcctc cagagattag      3420
     ccgaagaggg agcattggaa tatcccgtcg catcgaaaat cctctcggaa gatttttatg      3480
     tagatgatat gttgtcggga gcagacagca tagacgaagg catcaaaatg taccaggagc      3540
     tgactcaact attggaaaca tcgaaattta ccctcagaaa atggagctcg aacagtcccg      3600
     agatactagc agccataccg gagcatttga aggacgatcg gacttctctt gaactagatt      3660
     cttcgaaagc agccataaaa acattaggac tatcttggga acctagatca gaccagttcc      3720
     gatttgctgt gcctcagtgg aacgattcca ttgagatcaa caagcgtgtc attttgtccg      3780
     attttgctcg cctatttgac ccacttggat tggtaggacc agtagtagtc caagctaaga      3840
     tatttctaca agatctctgg aagcagaaat gttcttggca cgaaccgctt agcgaagacc      3900
     ttcaacattg gtggctggac tttcgaaaga acttagctac actttccaca ctaacggttc      3960
     ctcggtggct cgcttttggt agtgatacca tttcggctga aatccatgga ttctgcgacg      4020
     catctgagaa agcctatgga gcgtgcattt atctacgatg tacgtgtttc aatggtcaag      4080
     tttctgtaag cctaattgca gcaaaatcta gaattgcccc gctcgatgat gttcgacata      4140
     aaaggaagaa aatgagcatt ccacgtttgg aactctcatc agctcttgtt ctcagccatt      4200
     tacacgagaa ggtagaaaac agtttgcgta ttaaggctca atcgttttat tggaccgact      4260
     ccaccattgt aaaatgctgg ctatcttcga ctccctcccg gtggcaaatg ttcgtagcca      4320
     acagggtgtc ggaaatccaa catctgacac gaacgggaaa ttggaatcac attgctggat      4380
     cagaaaatcc agcagatgtg ctctctcgag gaacgactcc agaaaggtta gcagaccatc      4440
     ccacctggtg gcacggaccg gaatggcttc gaagtccgcg aaatttctgg ccaaaggagg      4500
     ttttgactga atctttggag ttggatcaag cgttattaga ggagaaatct actgtcgctg      4560
     tcaccattca tattcaatcc tttaacgaca tcttcaagct acgatcaagc ttcacagcac      4620
     ttgtgcgtat cactgcattg tgtcgtcggt ttgttttcaa ctgcaagcat cccgcaatcg      4680
     ccaagaaagg ttatctgtcc atccaggaac gtgaagaggc tctgctaaca ctcgtacgaa      4740
     tcgctcagaa agacagcttt accgaagatt tgaaaaccct agcgtcaaac gaacaagtct      4800
     ctccattgtc taggctgaaa tctcttcatc ccgctttagt gaatggtatc attgtggtcg      4860
     gcggccggct tgaaaacgcg caagtttccc ctggtagaaa acatcccatt atactagaca      4920
     accgtcatcc atttactttg atggttgtgg agtactatca ccgctacctt ctacatgcag      4980
     gacatcaact attaatagct agcattcgtg atcgattctg gccgctccgc cttaaaaatt      5040
     tgtgcagaac tgtgatccat ggttgcgtaa gatgctttcg aataaagccg cagattcaag      5100
     agcaacttat gggagatctt ccgtcagagc gcgtctgtcc agccccacca tttatccgag      5160
     tgggagtgga ttactgcgga cccttcaaaa tacgctttcc ccatcgcaaa tcagacattc      5220
     gcatctgtta tgtagtcatt ttcatatgtc tggttacaaa ggctgtccat attgacatgg      5280
     tagcggatca aactaccgaa ggctttatag cagcccttcg acgcttagtt gctcgacgtg      5340
     ggcgtcctga cgtagtaatg tgcgataatg ctagatattt catcggagct aaacgagaat      5400
     tggatcaact tcgccggtta ttcaactcac aagccttcac taattcgata ccacaagcag      5460
     cagcaaatga aggtatcaac ttcaaattca ttccgccgag gtccccaaat ttcgggggcc      5520
     tctgggaggc agcggtaaaa tcactgaaat accatctaaa gcgagttgtt ggaaacaatg      5580
     tggttacgcc ggacgaattc tatacgcttc taacgcaaat agaagcttgc ctcaacagtc      5640
     gtccgctcac accaatcagc aacgagccct cagatctgga aattctcact ccaggtcact      5700
     ttttagtaca tcggccgttg acagcagttt tggagccgtc tctcgaagat ttgaaagaga      5760
     acagtttgtc aaaatggcaa aaagttcaac gatacctgca aattgtttgg aaaaagtggt      5820
     ccacatcata cctttctgat cttcaaaatc gcactaaatg ggtgattgag agaaaaaatt      5880
     tggcaacaaa catgatggtt ctactcaaag acgaaaatca gccgcccctc cgatggcctc      5940
     tcggacgaat tgttgcaaca catcctggaa aagatgggaa ggtcagggtg gttgaggtgc      6000
     aaaccaagga aggattgtat acaagagctg tctcaaagat ttgtgtccta ccaattctgg      6060
     acaacgataa ttcttctccg gcaaatagcc agaaagatac ataacttccg ttttcgatat      6120
     cggtgcaggg tgcgcctgcg gaggtcatcc gacctccgca taccagttaa gtcgtttttg      6180
     tttaaaaatt tgatcaaaaa agtcaaagaa atgtttgtac tccttagctg atcggccccc      6240
     ctggcggtcg ctgaccgcca cctcttcgac gctgtctcgt tcagtcacca ccacatgtcg      6300
     atgtcagccc agttcaaccc actcgcggag agagaaatcg acctttcccc gctcaaccac      6360
     tccactcaac gagaaggacg tcatctccag tcaaccatcc atcccatcct aaatgaagta      6420
     taccaccgtc aaggaacgtt cacgtggaac gcaacgtcat cggcgcaagg tgcgcccgtg      6480
     gtggctcgaa gccaccacgc cagggaagtc gcctttatgc atggtagtat tgtttaaaaa      6540
     atcgcctttc atctgattcc agaaattcgc agcatccaaa ctataggccc actggaatag      6600
     aagcctcacc agaagcacga tgacacaaga agaagattta atcaacccat acagtccaca      6660
     ttacaagtat gaagatcacc aacagaaaag ccttcatcgc gaaacctcag cagagcgatc      6720
     aacgttcatg atagaacact aatttttaag ttatatccgt aatatctgtg cagattctcg      6780
     taacgaccat tatgttatct gcaaatgaag agtttgtata tcgttcattc actagtatag      6840
     tattagcgca cattagttat tagctagttt gaaatcggta cccatttcaa ggcggccggt      6900
     aa                                                                     6902
//
ID   BEL-729_AA-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.03, Created)
DT   29-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-729_AA-I;
KW   BEL-729_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-359
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-359
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 381-381 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 359 BP; 132 A; 64 C; 60 G; 103 T; 0 other;
     tgatgaaaat aagagtaaaa tttgcgaacg taatccataa tgcaaaaagc taataccttg        60
     caatctataa gtcgtatcca aagagatatg agatagtgtg tagaaacaga ttcatagaaa       120
     aatttctctt tagctcatct ctcgctcacg ttatcaatac ttacgcatta aactgtaatt       180
     taagctaccc tatcgaaatt aaagagtcag tactcaacac gcaatgaatg tgatcggtct       240
     accttttgca cgtcgttaga ataaatttaa caataaagta atagttcgtt ttttccgaaa       300
     ccgcgagttc tttagtagcg aacaagaaag tgaaccagtg cacttgtgaa aacgtaaca        359
//
ID   BEL-72_AA-I repbase;    DNA;    INV; 6326 BP.
XX
AC   supercont1.274;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-72_AA_;
KW   BEL-72_AA-LTR; BEL-72_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6326
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.274; Positions  188787  182462.
XX
CC   'GTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..6326
FT                 /product="BEL-72_AA-I_1p"
FT                 /translation="MSGKDSTTSVPISPQGCKGCDRPIHVDDMVACDLCNN
FT                 WWHFNCAGVHASVSERSWICINCVECRKSLKSFKSTSSNARLRLRQLAEAK
FT                 DLEDRIFMEKAERDRAYLTQKHQIETEIESDVTETSSSRGSDTSHSRRKSL
FT                 HDWIVDQNRSLEGAVGGLELTESKSLFERAATRPRTGTIPKTVSGTHPATP
FT                 IFTSTAELPIVNRKAAVQAAQSIELDHYTEGKQLPHDSSQVQMQESLLNMQ
FT                 HPRSDPAVRSLQRRVSIQSRVGQSVALAPPSKTFGLLEPATIENQPMIMEL
FT                 HTTAPLRGSGSNRSVCMPCQPEYVDVSAQPRLLEQSQHIFEQAVMHNQRST
FT                 PQPAPRYKHTINKETFSYRPDAHPLSAHTRAPQAEWNGHMSYQRPLAPSRH
FT                 SINAQITDSTQLYADHDGQPNQYHHATGQSGSPQRDREEYLLSHQPSVCQQ
FT                 SRIVQQPLPLQSVPAISAQQLAARQVVPRELPKFSGDPLEWPMFLQAFETT
FT                 TQLCGIQPDENLARLQKCLVGSARDKVQSILTLPAAVPNIIATLRDECGRP
FT                 DQLVHRLLIKVRGAPHPNINKLDTLITFGREVSNLVTYIEAANLQAHLSNP
FT                 MLLSELVAKLPPNLRLDWGLHSRSTGDESLKAFSDFVATIRSAACHVSMSS
FT                 EFSQSEDISSRRKDKSSFINAHSSEESSTSKPKNAEVRPCPLCNSVGHRIR
FT                 DCDIFKESTVGERRKLVDQHRLCQRCLVGHGKWPCRTKQPCSMNGCTEMHH
FT                 RLLHSEQAIDTVSTSDPRALISTHHCVLRSTLFKIIPATLYGAGKTITTYV
FT                 FLDDGSSHTLMDQDLADELGLDGENMPLCLQWTGNVTRKEPTSRQVNISIS
FT                 NIHGGSKYEMFDVRTVKKLDLPRQTLEYEQLSSQFPYLQGLPIASYREAAP
FT                 RLLIGANNANLILTLARRERRIGEPVATKTRLGWALFGGIRCKSESANLLV
FT                 HDCGCCQDDSLHELVKEYFAVDNLGITTPVMESAEDQRAQKILHESTKRTS
FT                 SGKFETGLLWRRNDIEMPNSYPMAERRLRCLERRLEREPELKRKVDDLIGE
FT                 YLQLGYAHIATEDELKNSNPKRTWYLPLGVVRNPRKPDKVRVVWDAAAKVN
FT                 GISLNSLLLPGPDLLTPLLTVLCQFRQRQYAVSADIRQMFHQLLIKPEDRQ
FT                 VQRFLYRSDSRSTPTVYVLDVATFGATCSPCSAQYAKNLNAFQHMDTFPDA
FT                 AEAIVKNTYVDDYLDSRDTIDEAVQLSLDVRAINQKAGFELRNWQSNSKEI
FT                 LRRIGEKCHDSVKNFAAEKSTPTERVLGMTWMTDNDVFVFSTQFREDLLPL
FT                 LSCDTVPTKRQVLRVVMSYFDPLGIISNYTIHGRILLQDIWRSKANWDDPI
FT                 TNEDFVSWQRWVLLAPQLTKVKIPRCYFPAYDPNSFETLQLHVFVDAGDQA
FT                 YGAVAYFRIVDRGIPRCALVAAKAKVAPLKPLSTPRSELNASVIGIRLMKM
FT                 IEKNHSFTINKRFLWTDSTTVLSWLHADPRKYRQYVALRVSEILSESEISE
FT                 WYWIATSKNVADKTTKWGHGPDFDSESEWYSGPSFLLRPETEWTIKQPHIM
FT                 DPPEELKAINVHRETGYESIIDFAEFSQLDSLLRKLAYLHHFRRCCVSKPR
FT                 SPSATGKVMLNQEDYDAAEKSLWKIVQAQEFHNEIYTLKKNASLPLNERVR
FT                 LGKSSPLTKLSPFIDEDGVLRLQSRIDPNAIYYAFNFRNPIVLPKQGHVTE
FT                 LLVLKYHQRFGHANVETVVNELRQRYYIPSLRAVVKSLVKRCMWCRVYRAV
FT                 PSPPKMAALPEPRVQPYIRPFSFVGLDYFGPMLVKRGRTNVKRWVALFTCL
FT                 TVRAVHLEVVHSLSTESCKMAIRRFIARRGAPREIFSDNGTNFRGAARELA
FT                 EEIKNINAEVAVTFTNVDTKWTFTPPSAPHMGGVWERKVRSIKEAFKSLCH
FT                 RDKLDDEEFSTFLMEAEMIVNSHPLTFVPLDEPNQEVLTPNCFLLMDSNGA
FT                 NNAPKIALDNSGALRRNWKLLNHLLNQFWKTWIKAYLPTIARRTKWFNEVR
FT                 PLQTGDLVIIVDEGVRNGWLRGRVIKVYPGGDGQVRKVDVQTDSGILKRAA
FT                 TKVALIDVQDNSKTNSAIGITGGT"
XX
SQ   Sequence 6326 BP; 1852 A; 1467 C; 1433 G; 1574 T; 0 other;
     ttctcgaaaa ttgtggcgca caggatgagc ggaaaggact ccacaacatc cgtaccaata        60
     tctccccaag ggtgcaaagg atgcgaccgc ccgattcatg tagacgacat ggttgcctgc       120
     gacctatgca ataattggtg gcactttaat tgtgctggag ttcatgcatc cgtaagtgag       180
     aggtcgtgga tttgcataaa ttgcgtcgaa tgccgtaaat cacttaagtc gttcaaatct       240
     accagttcta atgctcgtct tcggctccga caacttgcag aggcaaaaga tctcgaagat       300
     cgtatcttca tggaaaaggc ggaaagagat cgcgcttacc ttacccagaa gcatcaaatc       360
     gaaaccgaaa ttgagtcaga tgtgacggaa acatccagca gcagagggtc tgatacgtcg       420
     catagccgtc gcaaatcgct gcacgattgg atagtggacc aaaatcgttc tctagaaggg       480
     gccgtaggtg gcttggaatt gaccgaaagc aaatctttgt ttgaaagagc agctacacgt       540
     cctaggacag ggaccattcc taaaacagtt tcgggtacac atccagcaac ccctattttc       600
     acatccactg cagaattgcc catcgttaat cgtaaagcag cagtacaggc agctcagagc       660
     attgaactcg accattacac ggaaggaaag caactaccac acgattcatc ccaggtccaa       720
     atgcaagaga gccttttgaa catgcaacat ccacgatctg accctgccgt ccgaagtctg       780
     caacgtcgtg tttcaataca atcacgcgtt ggccaatctg tggctttggc tccaccgtct       840
     aaaacattcg gcttactgga accagccacc atagaaaacc agccgatgat catggaacta       900
     catacaaccg caccacttcg gggatcaggt tcaaatagat ctgtatgtat gccttgtcag       960
     cctgaatacg ttgatgtatc agctcaacct cgactactgg aacaatcgca acacattttc      1020
     gaacaagctg tgatgcataa tcagcgtagc actccacaac cagcaccgag atataaacat      1080
     actatcaata aagaaacatt ctcttatcga ccagatgcac atcctctctc cgcacataca      1140
     cgtgcaccac aggctgagtg gaatggtcat atgagttacc agcgaccgtt agcaccatca      1200
     cgacattcaa tcaatgctca aatcaccgac agtactcaac tgtacgctga ccacgatggt      1260
     cagccaaacc aataccacca tgctactggt caatcaggtt caccacaacg cgaccgagaa      1320
     gagtatttac tcagccatca accatctgtt tgtcaacaaa gtcgaatagt gcaacaacct      1380
     ctgccgttgc agtcggtgcc tgcgattagc gcacagcaac tcgctgctag gcaagtggtg      1440
     cctagggagc taccgaaatt ttctggtgat cccttggagt ggcctatgtt tctgcaggca      1500
     ttcgaaacga caacgcaact gtgcggcata caaccagatg aaaatctggc taggcttcaa      1560
     aaatgtctcg ttggaagcgc tcgggataaa gtccagagta ttctcacgtt gcctgctgct      1620
     gtccccaata ttattgcaac attacgggac gaatgtggcc ggcctgacca actggtacat      1680
     cgtctgctca ttaaagtgcg aggtgcaccg catccaaaca tcaataagtt agatacgctt      1740
     atcacgtttg gacgggaggt cagtaacctt gtcacttaca tcgaagccgc aaatcttcag      1800
     gcccacctct cgaacccgat gttgctttcg gagttggtag ccaaacttcc gccgaatctt      1860
     agactggatt ggggattgca ttcccgttca acaggagacg agtcactaaa agcattcagt      1920
     gatttcgttg ctacgattag atctgcagca tgtcatgtat ccatgtcttc ggagttttcg      1980
     caatcagaag atatttcatc gagaaggaag gataagtcta gcttcatcaa tgcacatagc      2040
     tcagaggagt cttcaacttc gaaacccaag aacgctgagg tgagaccttg tccattatgt      2100
     aactccgttg gacacagaat acgcgattgt gacatcttca aagaatcgac ggtaggggaa      2160
     agacgcaaac tggtcgatca acacaggttg tgtcagcgat gcctagtggg ccatggcaaa      2220
     tggccatgtc ggactaaaca accgtgcagc atgaatggat gtactgagat gcaccacaga      2280
     cttctgcatt cagagcaagc tatcgataca gttagtacat cggatccacg agctctaatc      2340
     tcaactcatc attgcgtact gcggtcaaca ttattcaaga taattcctgc aacattgtat      2400
     ggggccggta aaaccatcac aacttatgtc ttcttagacg acgggtccag ccatacgttg      2460
     atggaccagg atttagctga cgaattgggg ctcgatggag aaaatatgcc actttgtctt      2520
     caatggacgg gaaatgtgac taggaaagaa ccaacatctc gacaagttaa tataagtatt      2580
     tcaaacatcc acggaggctc taaatatgag atgttcgatg ttagaactgt taaaaagcta      2640
     gacctccctc ggcagacttt ggagtacgag cagttgtctt cccagttccc atacttgcaa      2700
     ggcctcccaa tcgcaagcta tcgtgaggcc gctccacgac ttctaattgg tgcgaacaat      2760
     gcaaacttga ttttgacgtt agctcgtcga gagagaagaa tcggagaacc agtggcaaca      2820
     aagacgcgtc ttggttgggc cttattcgga ggtataagat gcaaatctga atctgccaac      2880
     cttttggtgc acgattgtgg atgctgtcaa gatgattcat tacatgagct tgttaaggaa      2940
     tattttgctg tagataatct cggaattacg actcctgtaa tggaatctgc agaagatcag      3000
     cgagcacaaa aaattctgca tgaatctacg aaacgcacat catctggtaa atttgaaacc      3060
     ggattactct ggagaaggaa tgacatcgaa atgccgaaca gctatcctat ggcagaaaga      3120
     agattgagat gcctcgagag aaggcttgaa agagaaccag aacttaaaag gaaagttgat      3180
     gatttgattg gagaatatct acaactcgga tacgcacaca tagctactga ggatgagcta      3240
     aaaaattcga acccaaagcg cacctggtat ttaccactag gagtggtacg caaccctcga      3300
     aagcctgata aggttcgcgt tgtgtgggac gcagcggcca aggtaaatgg aatttctcta      3360
     aattcacttc ttttacctgg acctgacctg ctgacacctt tgctgactgt tttgtgccag      3420
     tttcgccaaa gacaatatgc tgtttcagcc gatatccgtc aaatgttcca tcaacttctc      3480
     ataaagccag aagatcgtca agttcaacgt ttcttatatc gttctgattc tcgttccact      3540
     ccaacggtgt atgtattaga tgtggccaca tttggcgcaa cctgctcgcc atgttcggcg      3600
     caatacgcca aaaatttgaa cgcgtttcaa cacatggaca catttccaga cgcagcagaa      3660
     gccattgtca aaaacacgta cgttgacgac tatctcgatt cacgggacac tatcgatgaa      3720
     gctgtccaat tgtcacttga tgtacgagcg atcaaccaga aagctggatt tgagcttaga      3780
     aattggcaat ccaactccaa agaaatctta cgacgtattg gagagaagtg tcatgattcg      3840
     gtgaagaatt ttgctgctga aaagtcgact ccaacggaac gtgttcttgg aatgacctgg      3900
     atgacagata atgacgtatt tgtgttttca actcaatttc gagaagatct actccctctt      3960
     ctatcatgtg ataccgtacc aaccaaacgt caagttttga gagtggtaat gagttatttt      4020
     gatccgcttg gaatcatttc caactatacc atacatgggc gaatacttct tcaggacatt      4080
     tggcgttcca aagccaactg ggacgaccct atcaccaatg aagactttgt gagttggcag      4140
     agatgggtat tgcttgcgcc acagcttacc aaggttaaaa ttccccgatg ctacttccct      4200
     gcatatgatc caaacagctt tgagacgtta caactccatg ttttcgtaga cgctggagat      4260
     caggcttacg gtgccgttgc ttattttcgt attgtagata gggggatacc aagatgcgcc      4320
     ctggtagctg caaaagctaa agttgcgcca ctcaagcctc tctctacccc acgaagtgag      4380
     ctaaatgcta gcgtcatcgg aattcgactc atgaagatga ttgagaagaa ccattcattc      4440
     acaatcaaca aacgctttct gtggacggat tcaacaactg ttttatcctg gcttcacgca      4500
     gatcctcgta aatatcgcca atacgtagca ctgagagttt cagaaatact atcggagagc      4560
     gaaattagtg aatggtattg gattgctaca tctaaaaatg ttgctgataa gacaaccaag      4620
     tggggtcacg ggcctgattt cgattctgaa agtgaatggt atagtggacc aagctttcta      4680
     cttcggccgg aaaccgaatg gactatcaaa cagccccata ttatggatcc accagaagaa      4740
     ctcaaagcca tcaacgttca tcgagaaact ggctatgagt cgataattga cttcgccgaa      4800
     ttttcccaat tagattcgtt gctgagaaaa cttgcatatc ttcaccattt tcgacgatgt      4860
     tgtgtcagca aaccaaggtc cccatcggct acaggcaagg tgatgttaaa tcaagaggat      4920
     tatgatgcag ctgaaaagag tttatggaaa atcgttcaag cgcaagagtt ccacaacgaa      4980
     atttacacgc tgaagaaaaa cgcttctttg ccgttgaacg aacgagttcg tctaggaaaa      5040
     tcgagtccgt tgacgaaatt atcacctttt atcgatgagg acggagttct tagattgcag      5100
     agccgcattg acccaaatgc aatctactat gctttcaact ttcgtaatcc tatcgttttg      5160
     cccaaacaag gccacgttac agaactccta gtattgaagt atcatcaacg gttcggtcac      5220
     gctaatgtag aaaccgttgt taatgagctg cgacaaagat attacatacc aagtcttcgg      5280
     gctgtcgtaa agagcttagt aaagcgatgc atgtggtgcc gagtgtatcg tgcagttcca      5340
     agcccaccga aaatggcagc gctgcctgaa ccacgagtgc aaccttacat acgaccgttt      5400
     tctttcgttg gactggacta ctttggccca atgctcgtaa aaagaggtcg cacaaatgtt      5460
     aaacgttggg tagcattgtt tacttgcctc accgtgagag cagtgcattt agaggtggtg      5520
     cactccttgt ccacggaatc ctgcaaaatg gccattcgtc gcttcatagc tcgcagagga      5580
     gcgccacgag agattttcag cgacaacggc actaactttc gaggggccgc tcgagaattg      5640
     gcagaagaga tcaaaaatat caatgctgaa gttgcagtca ctttcacaaa tgtggatacg      5700
     aaatggacct ttactccccc gtccgcaccc cacatgggag gagtgtggga gcggaaggtc      5760
     cgttctataa aagaagcgtt taaatcattg tgccatcgtg ataaacttga tgacgaggag      5820
     ttttcaacat ttctaatgga agcggaaatg attgtcaatt cccacccact gacatttgtt      5880
     cctctagatg aacccaacca agaagtactg acaccgaatt gtttcttgct gatggattcc      5940
     aatggggcaa ataatgctcc caaaatagct cttgacaact ctggggcact gagaaggaac      6000
     tggaaacttt taaatcatct actaaatcaa ttttggaaga cctggataaa agcatatcta      6060
     ccgaccatcg cacgaaggac caaatggttt aatgaggtac gtcccctaca aaccggagac      6120
     ttagttatca tcgtcgatga aggtgtccgc aacgggtggc tacgtggacg tgtgatcaaa      6180
     gtgtatccag gaggagatgg acaggtcagg aaggtggatg ttcaaacaga ttcagggatt      6240
     cttaaaagag ctgcaactaa ggtggcctta attgacgttc aagataatag taagaccaat      6300
     tctgcaatag gtattacggg ggggac                                           6326
//
ID   BEL-72_AA-LTR repbase;    DNA;    INV; 612 BP.
XX
AC   supercont1.274;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-72_AA_;
KW   BEL-72_AA-I; BEL-72_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-612
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.274; Positions  182461  181850.
XX
SQ   Sequence 612 BP; 209 A; 90 C; 110 G; 203 T; 0 other;
     tgttacgacg tacaagcgat aggccctgta ggtagttaga tcacgtcaaa gtcaaacgag        60
     gtgataatgt tgattgttga gaagctggaa ggaaagatat atgactcagc gtgcatacaa       120
     gtgatgaact aaatatcagc taaattccta aaatttattg tttttatcta cttttagatt       180
     gaattattac gtgctatagt gtaatgaatg aattccctaa attgccttat aaattgtgtt       240
     cctaaaggtg gtgaacttaa tgctttaaaa accatttgta cgaaataacc taaaactatt       300
     tacaatttgt atagaaacct acatcgaaga actttgtggc agtgattgaa ttagtatttt       360
     catttatttt ttataattgc acagttagtc gtaagttaag cataacacta tttgaattga       420
     tattcacact aattatgttc tacctatagc aaatagtacc gagagaagaa atcatccgca       480
     agtgcgttta caccggttga gtaggaaacc aatttgtaag aattcgttag tttgtaagca       540
     ttgtcaaaat ctaatatcgc aatatatttc agtcgagttg ctagttaaac acaactacgg       600
     gaagttttca ca                                                           612
//
ID   BEL-72_DTa-I repbase;    DNA;    INV; 5009 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   08-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-72_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5009
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 96% identity to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(199..1047,1037..3520,3478..5007)
FT                 /product="BEL-72_DTa-I_1p"
FT                 /translation="MDDASDQQAGVESGDLSELMENIEGVTSVTSSAAQGG
FT                 RLDLDRVSDTYSGVITAVTSTAPNVPIVASTCQQVAAHRSRMDWVDQHSPI
FT                 TSHREVSGLASQWKPGASGNMMYVTAYEGARFSVTHPGAAFGGTLVNSTFY
FT                 KGGMERLAYGTSSYHPGQLEANRNHVYAGSMPNMTYTTPRATASTSVYGIN
FT                 PQNIPDYASTSQGTWGTSPHMNTQTVAPAASEVCLNASQIATRQVISKDLP
FT                 CFSGNPEEWPMFIVNFEQSTERCGFSDQENLMRLQKCLKVRIRCGFECSTT
FT                 KTMYGPSFKVETFALNDEGSACTPIETHVAEKLGIDGPSDELCLRWTGEIT
FT                 QKAELKRINSTISPSYDAVRKFTLQNVKTVKHLDLPKQTLDESILRSHSQL
FT                 EKLPFRTYKDAQASLIIGLDNVLATRKPLVVKELEDSEFIAAKSRLGWSVY
FT                 GRKGDTGKPASSRVMHVCECNNDQQLDVLIKESFSLDAVGVSISNNTLRSK
FT                 EDERANRILNESTTYNRELKRWQTGLLWRYDNVKLPSSREMAMRRLQCLET
FT                 RMAKDKELREFVNQQIRRYEQLGYIRKLGTDEMTDEQRTWYLPIFVVKNPS
FT                 KGKSRLVWDAAAKVEGIALNTMLLKGPDQLPSLVGVILRFRQKAVGICGDV
FT                 KEMFHQIMVRKEDQGAQQFLWRYGDNSREPDRYVMRVMTFGASCSPAAANY
FT                 VRDRNAKQFLDEHPKAARAILRNTFVDDWLQSCESEEEMVRLAQEVRHIHK
FT                 EGGFEMRGWISNSSTVMRTLLGDTKTPERSIEMAESTTNERVLGMWWNPRA
FT                 DHFTFVNKFGENIYNETTVVTKRLILRIVMTIFDPLGLLGFYIIQAKLILQ
FT                 DVWRSAVGWDEPIGEEERDRWALWIRQLKHIEDLQIPRYLGLSTETCNIQL
FT                 HIFTDASINAFAAVAYIRIEERDGIRCALLASKTRVAPLKPISIPRMELMA
FT                 AILGLRLATFLEQELSIGVKRRVFWTDSKNVLYWIRSDARKYHQFVALRIG
FT                 EILENSETAEWKWVPSALNVADDGTKWTKESSFQADSRWFTGPSFLLESEE
FT                 HWPVTDLSPHILERINVHELKETSLSMLASIVPEINRFSKWEKLRGALKCV
FT                 MHFVGEAARSPEMRYAFLSKICKKELASEEAKIATRIRNLDDVNNVIYRMV
FT                 QEEAYAEEIILLRRGTVLGRKSPIYKLTPYLDEAGVLRIRGRIDRMSGVDM
FT                 NVKRPVILPKEHKVTNLLVDYFHRKFHHQLTEIVVNEMRQLYHIPGLRAKV
FT                 RSLANACQRCRNKKAAPEPPEMGDIPPERLAINELPFTNTGIDYFGPFEVN
FT                 VGRRREKRWGVLFTCLTVRAVHIELANSLSTDTFMLILEMLVARRGVPKRI
FT                 MSDNGTNFRGASRLLQEEIERISSKELENKYPEIEWSFIPPGAPHMGGAWE
FT                 RMIRSVKSILFEILEEKHVQEPVLRAALARIENTLNSRPLTYVPLETPEAD
FT                 ALTPNHFLRGASSAMVVKDGSNTNGILLGKSFRIAGQIADSFKKRWLREYL
FT                 PCLTQRAKWHGPPNNPICIGDVVIMVDESNPKVQWKKGVIMDLRVAKDGIA
FT                 RSAVIRTATGLLTRPIVKLAKLDVNKPAAAGEDGGQDVTIGFANKSARIVC
FT                 EGG"
XX
SQ   Sequence 5009 BP; 1520 A; 1078 C; 1306 G; 1105 T; 0 other;
     ttctaaaaaa cttctggtgg aaaacttcag cagcaaattg aaccatctac gaccacgatc        60
     tggagagaga tcgacgcgtg caccggagat tattacgaca cgagaaggtt cgatttgcac       120
     cttttataag cgcttggttc gtgtataacc acacatcctg gatccgcgtg gtcagaaggc       180
     agccatcgac tacatataat ggatgacgca agtgatcaac aggccggagt ggagagtggg       240
     gacctcagcg aattaatgga aaacattgaa ggcgtcacgt ctgttacgag ttctgcagca       300
     caaggaggac gtttggactt ggatcgcgtt agtgatacgt acagtggcgt gatcacggcg       360
     gttacatcga ccgcacctaa cgtgccaatc gtagcatcca catgtcagca ggtagcagca       420
     cacaggagca gaatggattg ggtcgatcaa cactcgccca taacaagtca cagagaggtg       480
     tccggattgg ctagtcagtg gaaaccaggt gcatcgggaa atatgatgta tgttaccgcc       540
     tatgagggag cgcgttttag cgtaacgcat cccggagcag cttttggagg aaccttggta       600
     aattctacat tctataaagg aggaatggag cgattagcct acgggacctc aagttatcat       660
     cccgggcaat tggaggcaaa tcgcaaccat gtttacgcag gatcaatgcc gaacatgacc       720
     tacacgacgc cacgagcgac tgcgagtacg agcgtatatg gaattaatcc tcaaaacata       780
     ccggattatg cgagcacaag tcagggcact tggggcacaa gcccgcatat gaatacacag       840
     acagtcgcgc cggcagcgtc agaagtatgc ttaaatgcat cgcaaatagc aacaagacaa       900
     gttattagta aggacttgcc ttgcttttct ggaaatccag aagaatggcc aatgtttatt       960
     gtgaactttg agcagtccac tgaaaggtgt ggatttagcg accaggaaaa tctaatgagg      1020
     ttgcaaaaat gcttgaaggt gcggatttga atgcagtacg accaaaacga tgtacgggcc      1080
     aagtttcaag gtagaaacat ttgcacttaa tgacgaggga tcagcctgca ctccgatcga      1140
     gacacatgta gcggaaaagt tgggtatcga cggaccttca gacgaactgt gcctacggtg      1200
     gacaggagaa ataactcaaa aagctgaatt gaagcgcata aattcaacga tctccccaag      1260
     ctacgacgca gtccgtaagt ttacgctgca aaatgtgaaa accgtcaagc atctggacct      1320
     gcccaaacag acgttggacg aatccatcct gagatcgcac tcgcagctcg agaaacttcc      1380
     ctttcgtacc tataaggatg cgcaagcttc gctcatcatc ggcttggata acgtgcttgc      1440
     gactaggaaa ccgcttgttg tgaaggagct cgaagactca gaatttatcg cagctaagtc      1500
     caggctcgga tggtctgttt atggacgtaa aggcgatact ggtaaaccgg caagctccag      1560
     ggtaatgcat gtctgcgaat gtaataacga tcagcaactg gatgttctta tcaaagagag      1620
     tttttcacta gatgcggttg gtgtgagtat atctaataac actcttaggt ctaaagaaga      1680
     cgagagagcc aatcgtatcc tgaacgaatc cacgacgtat aacagagagc tgaagagatg      1740
     gcagactgga cttctgtggc ggtacgacaa cgtaaagctc ccgtcctccc gtgagatggc      1800
     catgcgacga ctccagtgtt tggaaacccg tatggcgaaa gacaaagaac tacgagagtt      1860
     cgtgaaccag cagattcgac gctacgagca gttaggatat atccgcaaac taggaaccga      1920
     cgaaatgacc gacgaacaac ggacttggta tttgcccata ttcgttgtca aaaatccgag      1980
     taaaggaaaa tcgaggctag tttgggacgc tgcagccaag gtggaaggga tcgccctcaa      2040
     cacgatgcta ttaaagggac cggatcaact accctctctt gttggagtga ttttaagatt      2100
     cagacagaaa gcggtcggaa tatgtggaga cgtaaaagaa atgttccacc agataatggt      2160
     gcgtaaagag gaccaaggag cacagcaatt tctctggaga tatggcgaca acagtcgaga      2220
     gccagatagg tatgtaatga gagtaatgac ctttggtgct tcttgctccc cagcagcggc      2280
     taactacgtg agagatagga acgctaagca attccttgac gaacacccga aggcagcgag      2340
     agccatatta cggaatacat ttgtagatga ctggctccaa agttgtgagt ctgaagaaga      2400
     aatggtccgc ctagctcagg aagtacgaca catacataaa gaaggaggct tcgagatgag      2460
     aggctggata tcaaactcgt ctacagtaat gcggacgctc ttgggtgaca ctaaaacacc      2520
     tgaacgcagc attgagatgg ccgagtctac gacaaacgaa cgagtgctag gaatgtggtg      2580
     gaatcctaga gccgaccact ttacctttgt caacaaattt ggagaaaata tttataacga      2640
     aactacagtc gtgacaaaga ggttaattct tcgaatagtt atgaccatct ttgacccgct      2700
     aggtctgctg ggattttata taattcaggc aaagctgata ctacaggatg tgtggaggtc      2760
     tgccgtaggt tgggacgaac caatcggaga agaagagcgt gatcgttggg ctctatggat      2820
     aaggcaactc aaacacatcg aagatttaca aatcccacgg tatcttggct tatctactga      2880
     gacatgtaat attcaattac acatatttac agatgcaagt atcaatgctt tcgccgcggt      2940
     ggcctacata cggatcgaag aacgagacgg tatccgatgc gcgttactgg cctctaaaac      3000
     gagagtggcg ccgctgaaac ccatttcaat ccctagaatg gaactaatgg ctgctatttt      3060
     aggcctaaga ttggcaacat ttttggagca ggagttatcc atcggcgtga agagacgtgt      3120
     gttttggacc gattccaaaa acgttttata ctggatacgc tcagatgctc gaaagtatca      3180
     ccagtttgta gccctacgaa ttggtgaaat cctggagaat tccgaaaccg ccgaatggaa      3240
     atgggtccca tctgcgctga acgtggctga tgacgggaca aaatggacga aggaatcgag      3300
     ttttcaggca gactcgagat ggtttacagg tccatcattt ttattagaat cagaagaaca      3360
     ctggccggtt acggatctaa gcccacacat actggagagg ataaacgtcc atgaactaaa      3420
     ggagacgtca ttatcaatgc tggcaagcat cgtcccggaa attaatcgtt ttagtaagtg      3480
     ggagaagctg cgaggagccc tgaaatgcgt tatgcatttt taagcaaaat atgcaagaaa      3540
     gaattagcgt cggaggaggc aaagattgcc acacgtattc gcaacctgga tgatgtaaac      3600
     aacgtgattt acaggatggt tcaagaggaa gcgtacgcgg aagaaataat tcttctacgc      3660
     cgaggaaccg tattaggaag gaagagtcca atatataaac ttacgcctta cttggacgaa      3720
     gcaggcgtgc tgagaatacg cggccggatc gatcgaatga gcggagtgga tatgaacgtg      3780
     aaaagaccag taattctacc caaagaacac aaagtcacca atcttctggt cgattatttt      3840
     caccgtaagt tccaccacca actaaccgaa attgtagtca acgagatgcg ccaattatat      3900
     cacatcccgg gactaagagc caaagttcga tcactagcca acgcttgtca gaggtgtcgc      3960
     aataagaaag cggctccgga gccaccggag atgggagata ttccgccaga aaggcttgct      4020
     ataaatgagc taccttttac gaacactggc atcgactact tcggcccatt cgaggtgaat      4080
     gttggaagac gaagagagaa acggtggggc gtactgttca cgtgccttac tgtaagagca      4140
     gtacacatcg aattagctaa ctctctgtcg acagatacat ttatgctgat ccttgaaatg      4200
     cttgtggcac gaagaggagt gccgaaaaga ataatgtcgg acaacggaac caattttcga      4260
     ggagcgagcc gactattaca agaagaaatc gagaggatct catcgaagga gctggaaaat      4320
     aagtacccag agatcgagtg gtctttcata ccgccaggag cgccccacat gggtggcgca      4380
     tgggagcgga tgataagatc tgtaaaatct attctgtttg aaatactaga agagaagcac      4440
     gttcaagaac cggtgcttag agcagctcta gccaggatag aaaacacgct caattcccga      4500
     ccattgacgt acgtgccgct ggagactcca gaagctgatg cacttacgcc aaaccatttt      4560
     ctacgaggag caagcagcgc gatggtagta aaggatggca gcaacacgaa cggcattttg      4620
     cttggtaaga gttttcgtat tgcaggtcag attgcagaca gtttcaagaa gcgatggctg      4680
     agggaatacc taccgtgcct cacacaaaga gctaaatggc atggcccgcc aaataacccg      4740
     atctgcatag gagatgtcgt cattatggtt gatgaatcga accccaaggt gcagtggaag      4800
     aaaggtgtca tcatggatct tcgagtggcc aaagacggga tagcacgcag cgcggttata      4860
     cgcaccgcga ctggattgct gacccgaccg atcgtcaagt tggccaagct tgatgtcaac      4920
     aaaccagcag ctgctggtga agatggcggc caagacgtaa ccataggttt tgcaaacaaa      4980
     tcggcgagga ttgtttgcga aggggggaa                                        5009
//
ID   BEL-72_DTa-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.10, Created)
DT   08-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-72_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-371
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 96% identical to the other LTR.
XX
SQ   Sequence 371 BP; 117 A; 75 C; 96 G; 83 T; 0 other;
     tgttacggca tgaacccaat tagcagcaca gatcagttgg caacgcgacg tacgaacagc        60
     tgatgggtgg ccctcgccgg cgaatggtta cgcggggcga atagctaaca agaacaagag       120
     aagaaaagcg cgtggaagct gaaagttaac cggagagccg tacaagtttt ttagtctagc       180
     tctttctttt tgttatagtt tctgaattaa ccaatttcca caatagttaa acctgtgtca       240
     atatatgaag caataaagtt acacggagta aaacgaaagg agcggttttt ggtttgggac       300
     tttaacggag aagcagactt aaaaaaggta caacccccgc gaccacggag gcattgcccg       360
     gcgaggcaat a                                                            371
//
ID   BEL-730_AA-I repbase;    DNA;    INV; 7411 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.03, Created)
DT   29-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-730_;
KW   BEL-730_AA-I; BEL-730_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7411
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7411
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           874..6336
FT                 /product="BEL-730_AA-I_1p"
FT                 /translation="MSEEVSLRELSRQERQLKNSINAIAKFVSEFHRQTQE
FT                 NQIEVRLDMLENVMCKFYSVRRKIEIAMDEVEPEEDVEALNETADERKKRL
FT                 KKVATMREAQYDEAIRVVEERYFEVKAALISLRPPKVSTTQSTAVVQAPTD
FT                 NGMSRVKLPDIKLPSFSGKVKEWITFRDTFYSLIHNNRQLAPIDKFTYLRA
FT                 SVHGDALQEICSVELSAENYEVAWKALEKKFENKKLIVKAHLDAIFAVEPM
FT                 RRENCDALNHLLNEFDRNLQMLNKIGENTANWSTILAYMLCTRLDSATLRL
FT                 WETHHNSKDVPEFDELLEFLRDHCLVLQSITPCRPSDSEPRRNATQSRVTT
FT                 IHTSSQGTRKCLFCAEPFHLPFKCSKFKGLTINQRVEEANKKRLCRNCLSI
FT                 GHYAEGCSKGSCTKCGRKHHTMLHYDSAPISSRASKPSVPQTQDQTRAAGQ
FT                 AQPQPSQTAPRSQTQTPTQPATQTTNSYPVIQSSSQHTTPHPTTDPLATVT
FT                 LKASKQSESMQSFPRQVLMSTAIVRVQDTLGNVSFARTLLDSCSEFCYVTT
FT                 SFSKKLKLRETPAFLKVEGIGNGTVTSTKSVEARVQPRQATLSTFDEDIQF
FT                 YVLPRITRTLPINPVNVNLLEIPTDIVLADPSFGEPGPIDMIIGAEFYIDL
FT                 LAEGRRKLSDSGPTLQETVFGWIVSGKLPEAPANIPRTSTFVSTMVDLQEL
FT                 IAKFWELETCQVNSTNSVEETACEEIFNKTTTRNDEGRFVVALPRKENVME
FT                 KLGESKNIAIRRFLSLERRLDSDLQLKAMYTEFIHEYLLMGHMKQVPEEIT
FT                 SEGPVYYLPHHAVLRPDSTTTKLRVVFDASCRTSTGISLNEALMVGPVVQD
FT                 PLLAILLRFRLRRIAVVSDVAKMYRMVLTQQKDHPLHKIVWRDSKEQPLKF
FT                 FELTTVTYGTASAPYLATRCLKKLGEDCVLTHPIASEVIQHDFYVDDMLSG
FT                 ADSIEEAKTLVKQVSEVSDSAGFNLRKWNSNSKEVLRSIPKYLRDERSMLD
FT                 FDSSNATVKTLGLRWNVTSDEFHFSFPQWKSDSSTITKRSIHSDAACLFDP
FT                 LGLVGPVIVQAKIFIQQLWRLKCGWDDPLDQSIQGMWREFRQNLMALETLT
FT                 IPRWVGFSNDCVSVQLHGFSDASTIAYGACLYLRCVASNGTVTVRLITSKS
FT                 RVAPLENSEQKKKKMTIPRLELSAALLLSHLYEKFIQVKTIPVAFFWTDST
FT                 IVNHWLQSPPSRWQVFVANRVSEIQHLTQGGTWSHVAGIENPADLISRGMS
FT                 PAQLQYEKRWFEGPQWLLQDQCYWPQTSLVPEDQIDTALLEERSSQAFPAQ
FT                 GTPPSEVFGLRWSYQELQRIVALLLRFKHNATTANQIARRTGPLSLAELEA
FT                 ALLVLVRQAQKDSFPEELADLRKHGEVKSSSRIKTLHPVLMADIMCVGGRL
FT                 ANAPVSETRKHPFILDHHHPLALSLARHYHHKFYHAGQQLLVAVLRERFWP
FT                 TNANSLARKVIHGCIPCFRRKPKVVEQLMADLPAERVTPSAPFLKVGVDYC
FT                 GPFHISYPNRKSSPVKCYVAVFVCLAVKAIHLELVMDLTTQAFIAALRRFV
FT                 ARRGRPQIIMCDNATTFVGANRELKELLKQLKSSQFQDPVIKEAANDGIEF
FT                 KFIPPRTPNFGGLWEAQVKSFKTHFKKAVGLRTLKVEEMLTALAQIEAVLN
FT                 SRPMTAMSSDPADYEALTPGHFLVQRPLTAIADHNFDDVPVGQLKMWEQAQ
FT                 SLTQQFWKKYRTQYLSDLQNRVKWNKQNSNIAVGTMVLLKEENTPPLRWAL
FT                 GRVIKTFPGTDGNIRVVTVRTKDGSFDRGIAKVCPLPIWDNEILQQTTSH"
FT   CDS           6371..7045
FT                 /product="BEL-730_AA-I_2p"
FT                 /translation="RSPPLCILKDQSVSLQLVKGQVSSSIVCMCLSKSLVL
FT                 VKGNTEAIQFSIGDSIYSYSGALGTCGGHWVIATLSSILITSVSSVALSPA
FT                 TTLSPGDSHGTLSSITSSVRLAMGPASSPSIATTEDKLQAFRWNHYPPGAT
FT                 PRRTLRHHYCLCGVSCSSFGKTTHRYYIHPFLRKSLLQFNHQPVNGTYDDV
FT                 NQEVSTTLRQVHRPMHSIEKTITNVLQTPRRKPTI"
XX
SQ   Sequence 7411 BP; 2056 A; 1767 C; 1769 G; 1819 T; 0 other;
     tggtccttcg agccggattt taaccggtgg acactggaaa acttgcgcgg gcgttcgata        60
     gtgaccgcgt ggtgaagtgg tggaaatact ccacagaaga ctattggcgt cattttggtc       120
     agatagcgtc ggcattgtcc gacatttcac tattgttcct gtgccggtga tgccaatagg       180
     gaagataaag tgataaaaag ttgccacgtg tggatgctgt tgctgattgc gagtctggtt       240
     gctgatttct gttgctggtt gctgattgct gttgcggatt gctggttgct gttgctgctt       300
     cctgggtgct gttgctgaga cggacgaagg tcgtggtggc tggcgatcga aaagcaagtt       360
     gattcaggga agtaattgat tgcatgtctg gggtggcgtt ctttgcatgt ggcgtctccg       420
     tattgtgggc ttgtgtgggg cgaacaaaga gcttcaataa attttacaaa gtgaatgcgt       480
     gagcgtttct attccggcat ttgtggtctg gtttcgagta attgtgtccc tgacggatta       540
     tctggtttgt tggttccctt ggttgcctag tccgctgctg gtcctcctta tcggctgtca       600
     atggtcgtta gtccggtcaa ttcgagtcgc gtccctgtgg aacgtcgtgt tagatctccg       660
     agaagcattc cagtcgatca tccgaaaagt gagtgataaa aagtgattag caagtggacc       720
     tttcaatcag tttattgcgc tgctatactg tatcaagtaa gtgaactata cgaacttaag       780
     tggcagtgtg taacttgaac tctgaacttt gtgagaagtg caagcagtgc attaaacttt       840
     gattgcgatt agcgaagtga agtgtagttc aacatgtcgg aagaagtgag tttgagagag       900
     ctgagtcggc aagaaaggca gctgaagaat tccatcaatg ccatcgcgaa gtttgtcagt       960
     gaattccata ggcaaactca ggaaaaccaa attgaagtgc ggttggatat gttggagaat      1020
     gtgatgtgca aattctacag tgttcgtcgc aagatcgaaa tcgctatgga tgaggttgaa      1080
     cctgaagaag atgtcgaggc cttgaatgaa acagcagatg aacgtaagaa gcgcttaaaa      1140
     aaggtagcta cgatgcgcga agcccagtac gatgaagcaa tccgtgtggt ggaagaaaga      1200
     tacttcgaag tcaaagctgc tctgatttcg ctaagacccc caaaggtgag cacaactcaa      1260
     tcgactgccg ttgttcaagc tccgacggat aatggaatgt cgagagtcaa gctgccagac      1320
     atcaagctgc cttccttcag cggcaaggtc aaggaatgga taacattcag agacacgttc      1380
     tacagtttaa tccacaataa tcgtcagcta gcaccaattg ataaattcac gtatttgcgt      1440
     gcttctgtcc acggcgatgc tcttcaagaa atctgttcag tagagctttc cgctgaaaat      1500
     tatgaggtgg catggaaggc tctcgagaag aaatttgaaa acaagaagct cattgtcaaa      1560
     gcgcatctgg atgcaatatt tgctgtggag ccaatgcgac gagaaaactg tgatgccttg      1620
     aaccatctgc tcaatgagtt tgaccgaaat ctccagatgc ttaataaaat tggggaaaac      1680
     acggcaaact ggtcaacaat cctggcctat atgctttgca ctcgtttgga ttcggccact      1740
     cttcgactat gggagacgca ccataattcg aaggacgtcc cggagttcga tgaattgcta      1800
     gaattcctaa gagatcactg tttggtgctg cagtcaatca caccatgcag accgagcgat      1860
     tctgagccga gacgcaacgc aacgcaatca cgggtcacaa cgatacacac gtcttcacag      1920
     ggtacaagaa agtgtctatt ttgtgcggaa ccgtttcatc ttccgtttaa atgcagcaag      1980
     ttcaaaggcc taacgatcaa ccaacgagtg gaagaggcga ataagaaacg tttgtgtcgc      2040
     aactgcctat ccataggaca ctacgctgaa ggctgttcca agggctcctg tactaagtgc      2100
     gggagaaaac atcacacaat gctgcattat gacagtgcac ccatcagttc gcgagcttcg      2160
     aaaccatccg ttccacaaac gcaagatcaa acccgcgcag caggacaggc acagccacaa      2220
     ccaagtcaaa cggcaccaag aagtcagaca caaacaccca cacaaccagc tacacaaacc      2280
     acaaactctt atcccgtgat tcaatcaagc tctcagcaca caaccccaca ccccaccaca      2340
     gacccactcg ccactgttac actgaaagct tcaaagcaat cagaatctat gcaatctttc      2400
     ccacgacaag tgcttatgtc caccgccatt gttcgagtgc aagatacgct cggaaatgtg      2460
     tcgtttgctc gaacattgct ggactcctgt tcagagtttt gttacgtcac caccagtttc      2520
     tcaaagaagc tcaaactgcg ggaaactccg gctttcctga aagttgaagg aattggcaac      2580
     ggaactgtaa cttcgacaaa atctgtggaa gcaagggttc aaccacgaca agcaactctc      2640
     tctacgttcg atgaagatat acagttctac gttctgccaa gaatcacccg aaccttgccc      2700
     atcaaccctg taaatgtgaa cctgctggag ataccaactg acatcgtatt ggcggatcct      2760
     tcatttggtg aaccaggtcc catcgatatg attattgggg ccgaatttta cattgacctt      2820
     cttgctgagg gcagaagaaa gctgtcggac agcggtccaa ctctacaaga gactgttttc      2880
     ggttggatcg tgtccggaaa actaccagaa gctcccgcca acattccgag gacatcaaca      2940
     ttcgtcagca ccatggttga tttgcaagaa cttattgcca aattttggga attggagacg      3000
     tgtcaagtca acagtacaaa ttcagtggaa gaaacagcgt gtgaagagat tttcaacaaa      3060
     accaccactc gcaacgacga aggaagattc gtcgtagccc tgccgaggaa agagaatgta      3120
     atggagaagc tgggagaatc caaaaacatt gccatccgac gattcctgag cctcgagaga      3180
     cggctagata gcgaccttca actcaaggcg atgtacaccg aattcattca tgaatatctt      3240
     ctgatgggtc acatgaagca agttccggag gaaattacca gcgaagggcc ggtatattat      3300
     ttgccgcatc atgcagtgct gcgtccagat agcacgacca cgaaacttcg tgttgtcttc      3360
     gatgcttcgt gccgtacatc aacgggaatt tcactcaacg aggcattgat ggtggggcca      3420
     gtcgtacaag atccgctcct ggccatttta cttcgatttc gcttacgtcg gattgctgtc      3480
     gtctcggatg ttgctaaaat gtaccggatg gtacttactc aacaaaaaga tcatcctctc      3540
     cacaaaatcg tgtggcgtga ttcgaaggag cagcccttga aattcttcga actaactact      3600
     gtcacgtacg gaacggccag tgctccgtat ttggctacaa gatgcctcaa gaagcttggc      3660
     gaagattgtg tattaacgca tcctattgca tctgaggtaa tacaacatga cttttatgtc      3720
     gacgatatgc tgtcgggcgc cgatagcatc gaagaagcta aaacgttagt aaagcaagtc      3780
     agcgaagtgt cggattcagc aggatttaac ctccgaaaat ggaactcgaa ctccaaggaa      3840
     gtactccgta gcatcccaaa atatctgcga gatgagcgtt ccatgcttga cttcgactcg      3900
     tcgaatgcaa ctgtgaagac cttgggtttg cgatggaacg taacctctga cgaatttcac      3960
     ttctcgtttc cccaatggaa gtcggattct tcaacgatca ctaagcgaag catacactcc      4020
     gacgcagcat gcctgttcga tccactggga cttgttggtc cggtcatcgt gcaagcaaaa      4080
     atcttcatac agcagctctg gcggctgaaa tgcggctggg acgatcccct ggatcagtcg      4140
     atacaaggaa tgtggagaga attcaggcaa aatctaatgg cgcttgaaac tcttactatc      4200
     cctcgctggg ttggattcag caacgattgt gtttccgtgc aactgcatgg attcagcgat      4260
     gcgtcgacta tagcgtatgg agcgtgtctc tatcttcgtt gcgttgcttc aaatggaacc      4320
     gttactgtac ggttgattac gtcaaagtct cgagtggcac cgcttgaaaa ttcggagcaa      4380
     aagaagaaga aaatgaccat tcctcgtctc gaactgtcag ctgcactcct cttgagtcat      4440
     ctctacgaga agttcatcca agtaaagact atacccgtgg cgtttttctg gacagactcc      4500
     accattgtga atcactggct acaatcacct ccgtctcgtt ggcaagtctt tgttgccaat      4560
     cgagtatccg agattcaaca tctcacccaa ggcggaactt ggagtcacgt agcgggaatt      4620
     gaaaatcctg cagacctaat ctctcgtggg atgtcaccag cacaacttca atatgaaaag      4680
     cgctggtttg aaggtcctca atggttattg caggatcaat gttactggcc gcaaacaagt      4740
     ctcgtcccag aagatcagat cgacaccgca ctcctagaag agcgatcttc acaagcgttt      4800
     cccgcgcagg gaacccctcc tagtgaggtg tttggattac gatggtcata ccaggagctt      4860
     cagcgtattg tggcactttt gctacgcttc aaacataatg ctacaactgc gaatcaaatt      4920
     gcaaggcgaa caggaccttt gtcactagca gaattagagg cggcgttgct agtactggtg      4980
     cgtcaggctc aaaaagacag ttttccagag gagctcgcag acctgaggaa acatggcgaa      5040
     gtaaaatcat catccaggat taaaacgcta cacccagtat tgatggcaga tatcatgtgc      5100
     gttggcggtc ggcttgccaa tgcgccagtg tcggaaaccc gaaagcatcc cttcattttg      5160
     gatcatcacc atcctttggc attatcgttg gcaaggcatt accatcacaa attttatcat      5220
     gccggacagc aacttttagt agcagtcctt cgtgaaagat tctggccaac taatgccaac      5280
     agtttggcca gaaaggttat acacgggtgt attccgtgtt tccgaagaaa accgaaagtc      5340
     gtcgaacagc tgatggctga cctcccagcg gagcgtgtta ctccatcggc accatttcta      5400
     aaggtcggcg tggattactg cggacctttc cacataagtt atcccaatcg gaaaagcagt      5460
     ccggtgaagt gctacgtcgc agtattcgtc tgtttagcag tgaaagccat acatctagaa      5520
     ctcgtcatgg atttgacaac acaggcattc attgcggctc ttcggcgctt cgttgcaagg      5580
     cgaggccgac cacagattat tatgtgtgat aacgctacta cttttgttgg agctaatcgt      5640
     gagctgaaag agttactcaa gcagcttaaa agtagccaat tccaagaccc agtaattaag      5700
     gaagcagcta acgatggcat cgaatttaaa ttcatcccac cccgaacgcc aaactttggc      5760
     ggcctgtggg aggcccaagt gaaatcgttc aaaacccact tcaaaaaggc agtagggctt      5820
     agaactctga aggttgaaga aatgttgaca gctctagccc agatagaggc agttttaaac      5880
     tcgaggccga tgacagccat gagtagtgat ccagccgact acgaagctct tactccaggg      5940
     catttccttg tgcagcgtcc gctgactgca atagcggatc acaatttcga tgatgttccc      6000
     gtcggccaac tgaagatgtg ggagcaagca cagagtctca ctcagcagtt ctggaaaaag      6060
     tacaggaccc agtacctttc cgacctgcag aaccgtgtaa aatggaataa gcagaacagt      6120
     aacattgctg tgggtacaat ggttctgctc aaagaagaaa atacgcctcc tctgaggtgg      6180
     gcactcggca gagtgatcaa aacattccct ggtaccgatg gaaacatccg tgttgtcact      6240
     gtacgtacta aggatggtag cttcgataga ggaatagcca aggtctgtcc cttgcctatt      6300
     tgggacaatg aaattctgca acaaacaacc agtcattaag cactccatga gtgcgtcaac      6360
     tgtgacctaa aggtcaccac ctctgtgtat actcaaagat caatccgtca gtctacaatt      6420
     ggtgaaaggt caagtctcgt cgagtatcgt ttgtatgtgt ctgtccaagt ctcttgtctt      6480
     ggtaaagggt aacactgaag ccattcagtt cagcatagga gatagcatct actcctactc      6540
     cggtgcactg ggcacctgcg gtggccactg ggtcatcgcc acgctaagtt caatattaat      6600
     tacttctgtg tcttcggtag cactatcacc tgctaccact ctatcacctg gagacagcca      6660
     tggtaccctc tccagtatca cctcttccgt tcgtttggca atgggcccgg ccagctctcc      6720
     gtcaatcgct acgaccgagg acaagttgca agccttccgt tggaaccact acccgccagg      6780
     cgctactcca aggagaactc tcaggcacca ctactgcctg tgtggggtaa gttgttccag      6840
     tttcggaaaa actacacaca gatactacat ccatcctttt ttgaggaaat cgctactaca      6900
     attcaaccac caaccggtga atggcacata cgacgatgtc aaccaagaag tatccaccac      6960
     gctgaggcaa gtgcatcgcc cgatgcattc cattgagaag accatcacca atgtactaca      7020
     gactcccaga cgcaaaccca ccatatgaag cgaagaagct gcagtccgca gtatccagtc      7080
     gcacgcgtac tctgcaaccg cagtacaaca cgctgcgatt catccaagca aggctttcaa      7140
     ttgcggtcaa caaccatacc gcagaagtag ccaacctgaa gagccggtat accatcggca      7200
     gtgaagatga catcgagata gagacgaagt ccagtaggaa ccgcgcttcc tacacattag      7260
     aattaacagt gaaccatcta taagttaagt cagttgaatt tcattccaat ttgtcaattc      7320
     gaaatagtaa gatgcatttg aactctaata tctataactg caactagaag taggattctg      7380
     ttgaaaccag taggtttcaa tgggggcggc a                                     7411
//
ID   BEL-730_AA-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.03, Created)
DT   29-NOV-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-730_AA-I;
KW   BEL-730_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-320
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-320
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 382-382 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 320 BP; 90 A; 74 C; 63 G; 93 T; 0 other;
     tgtttgcgaa caaaccatct atggaacccc aacttgcgct attatgtaga acagtttttg        60
     ctctcctctc gcattaatcc atccgatcac atacgatcga tgatcgaatc aaatagatag       120
     ctcgatagcc aagagaattt gaaatacaag ttagtgtacc acgaaacccg gtcgaataca       180
     gtcccttttt catccgcaga acgagtgatt ttctattcgg tgtccgaagt gcagtgatca       240
     ggtctatgac ctgttaaagt ggctctggac ttgcattcgt tttttaatta tacagtccac       300
     tagtgcggca gtccagaaca                                                   320
//
ID   BEL-731_AA-I repbase;    DNA;    INV; 5880 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-731_;
KW   BEL-731_AA-I; BEL-731_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5880
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5880
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           263..5611
FT                 /product="BEL-731_AA-I_1p"
FT                 /translation="MSTERRIKSLKTRQKSLLTSFGLIKAFVDSYEEETGA
FT                 REVAVRLEHLISIWNDFNATQAELETLDESAIEAHLKERIEFETDYFRVKG
FT                 FLLANNKNEPTSPRPSSSSSLTTPSPASSHIRLPDIKIPIFAGQLDQWLNF
FT                 HDLFVSLVHSSHELTSIQKFYYLRSSLSGEALKLVQTIAISANNYQVAWNL
FT                 LLDHYQNPARLKHTYVDSLFEFPPIKRESAGELHSLVEKFEANVKVLHQLG
FT                 ERTEYWDVLLIRMLSTRLDPTTRRDWEEHSSTLNAVSFQALTTFLQRRVTV
FT                 LQTIGKTSEVPLQSTNPKKPTQRFVASHGACATSQRKCITCSDHHPLYQCM
FT                 VFSKMSVEEKEREVRRNQLCRNCLRKGHMAKECPSSSTCRKCKAHHHTQLC
FT                 QGPSASSSQKSQESISSKETASHPSTDQPSASVSASFNNPVSFASTGHGRK
FT                 CVLLATAVVIVVDDSGKKHTARALLDSGSECCFATESFAQLVKAQRKRIHL
FT                 PIAGIGQSSTESRYKFQSTICSRVSDYSATVELFVLPKVAIDLPSAAVDAS
FT                 SWKVPPGIQLADPAFYQTSPVDLILGAEIFFELFKVSGRLQLGPGLPSLVN
FT                 SVFGWVVSGKGSRCPATTPIVSHVATINDLHSLMEKFWALEEDQATPHYSE
FT                 EEAACEKHFCQTVTRNSEGRYIVCLPVKEDVLAKLGDNRRIAIRRFRHMQN
FT                 QLARNEMLCRQYCDFMDEYLALGHMELVPNYEQLSDPCYYLPHHAVIREDS
FT                 TTTKVRVVFDASARTPNGPSLNDALMVGPIVQEDLRSIIMRSRIRPILLNA
FT                 DIKQMYRQILTDQRSNSLQHIVWSPSPDAPLQTYELKTVTYGTACAPFLAT
FT                 RVLQQLADDERTNFPEGATVLRKDFYVDDLFSGANTIEEAIALRKQLEGIL
FT                 KNGGFELRKWASNESKVVEDVSPEYKAMHSSVDLDKDLCIKTLGLHWEPTS
FT                 DVLRYKIQLPPKSTTESLTKRIALSHIARLFDPLGLVGPIITTAKIFMQAV
FT                 WTLVNDEGKPWSWDDELPLEFKARWESYQAQLPRLNDLRVQRCVTLPDPTT
FT                 FQIHVFTDASEQAYGACAYIRTTNPNGEIKVALLTAKSKVAPLKRQSIPRL
FT                 ELCGALIGAQLYEKVLASLQLTVNTFFWVDSTVVLCWLKASPSTWATFVAN
FT                 RVSKIQQATQNCVWNHVSGNQNPADLISRGISADDLINNHLWWRGPEWLQR
FT                 APNEWPVMKSNSSNPDEALREYKKTTVASAPATEEPSFIDQHAEKFSNYTR
FT                 MLRVTAYCLRFLQNCQRRSNQRFADTHLATEEIQKAETTLIKLIQQQHYGC
FT                 ERNNLLKQQYIPTKSRLRWFHPFLDDEQIMRIGGRINQSQLPFDSKHPIIL
FT                 PSSHPFSALLVRSFHLRHLHAAPLLLITLLRLRYWIIGARDLVKRIVHSCV
FT                 VCCRNRPKMIEQFMAELPAARVTASRPFSVTGIDYWGPIQVQAPHRRAAPR
FT                 KAYVAIFVCFCTKAVHLELVSDLSTAKFIQALRRFVSRRGLCSDIHSDNGR
FT                 NFVGADNELRRLLRSEDHKNAVAKECSEKGIKWHFNPPRASHFGGLWEAAI
FT                 ASAQKHFHRVLGTRILSYDDTETLLVQIESCLNSRPLIPLSDDPTDFEALT
FT                 PGHFLTGSALKAVPDYDYSSTPFNRLRQWQQTQKIFHDVWKRWHTEYLATL
FT                 QPRTKWLKPSTDMDVGRLVVLKDENSPPLRWQMARITELHPGADGIIRVVT
FT                 LQTPNGKLQRPVAKLCLLPVPTSSSTKTPSSSNRSPPESPLSTRQLGENHK
FT                 HTSDLSTTSLSD"
XX
SQ   Sequence 5880 BP; 1601 A; 1568 C; 1266 G; 1445 T; 0 other;
     ttggtccttc gaaccggata ccgtcgaact ccggtattcc gccagccgac tcgggtcaga        60
     accatccact tcgaggttat ctgcgccacg ccggtgctct ggaagcttct tcaactggaa       120
     ttgtacaagg catataactg cctgtaagca ggtaattggc tgtccaacca tctctatcaa       180
     aacctttttg agctacgcga tctgccgttt acagatcctg ctcaccttta atccgttcac       240
     cgtcatccgt tccatcccca cgatgtcaac cgaacgacgg atcaagtcat taaagacgag       300
     gcagaagagc ctcttgacgt cattcggtct aatcaaggca ttcgtggata gctatgagga       360
     agaaaccggt gctcgagaag tagccgttcg tcttgagcac cttatcagca tttggaacga       420
     ttttaatgct acccaagccg agctcgagac gcttgatgaa tcggcgatcg aggcccacct       480
     caaggagcga atcgaatttg agacagatta tttccgtgtg aagggttttc ttctcgccaa       540
     caataaaaac gaacctacgt ctccccgccc ttcgtcgtct tcttcattaa ccacgccaag       600
     ccctgcttcg tcgcacatca ggttgcccga catcaaaatt ccgatttttg ctgggcaact       660
     cgaccaatgg cttaacttcc acgatctctt tgtttcactg gtccactcct cacacgagtt       720
     aacaagcatt cagaaatttt actacctccg gtcatcgctg tccggagaag cattgaaact       780
     cgttcaaacc atcgccatca gtgcgaataa ttatcaagtc gcatggaact tactgctgga       840
     ccattatcaa aacccagcgc gattgaaaca tacttacgtc gattcccttt tcgagttccc       900
     cccaatcaaa agggagtccg caggtgagct ccattcgttg gttgaaaaat ttgaagccaa       960
     tgtcaaagtc cttcatcaac ttggcgagag aacggaatac tgggatgttt tgctgattcg      1020
     catgttaagc acgcgtttgg atcccacaac ccggagggac tgggaagaac actcttcaac      1080
     cctcaatgca gtttcctttc aagcacttac gacattcctc caacgtcgag ttactgtctt      1140
     gcagacaata gggaagacta gcgaggttcc tctgcaatcg actaacccca aaaaaccaac      1200
     ccaacgcttt gtcgctagcc acggagcttg tgctacgtct caacgaaaat gtataacctg      1260
     ctcagaccat cacccgctgt atcagtgcat ggtattttcg aaaatgtccg tcgaggagaa      1320
     ggaacgtgaa gttcgtcgaa accagttgtg cagaaactgt cttcggaagg gacatatggc      1380
     aaaggaatgt ccgtcgtcga gcacctgcag aaagtgcaag gcccatcatc acacccagct      1440
     ctgtcaaggt ccctcagcat ctagtagcca gaaatcccaa gaatcaatct cctccaaaga      1500
     aaccgccagc catccatcta ccgaccagcc atccgcttca gtgtcagcat ccttcaataa      1560
     cccggtcagc tttgcatcaa ctggacatgg gcggaaatgt gtactacttg ccaccgcagt      1620
     agtcattgta gtcgacgata gtgggaagaa acacactgct agggcgttgt tggactccgg      1680
     aagtgaatgt tgcttcgcca ccgaatcgtt cgcccagctg gttaaggctc aacgaaaacg      1740
     cattcatctc cctattgctg gaatcggaca gtcgtcgacc gaatctcgct acaaattcca      1800
     atcaacgatt tgctctcggg tttctgacta ttccgccaca gttgaactgt ttgtactgcc      1860
     aaaagttgcc attgatttgc cttcagctgc tgtggatgca tcatcgtgga aggtaccacc      1920
     tggaattcaa ttagcggacc cagcctttta tcaaacgagt cctgtcgatc tcatcctggg      1980
     agctgaaata ttcttcgaac tgttcaaggt gtccggaaga ctccaactag gacctggtct      2040
     tccctcactg gtaaactctg tcttcggttg ggtcgtttct gggaaaggtt ctcgatgtcc      2100
     agccaccact ccaattgttt ctcatgtagc cactatcaac gatctccatt cgctaatgga      2160
     aaaattttgg gctttagaag aagaccaagc tactccacac tattctgaag aagaagctgc      2220
     atgtgaaaag catttttgcc aaacagtcac taggaattcc gaaggtcgct acattgtatg      2280
     cctaccagtt aaggaagacg tactggccaa actcggcgac aaccgtcgca tcgctattcg      2340
     tcgtttccgg cacatgcaaa atcaactcgc tcgcaatgaa atgctttgcc gtcagtattg      2400
     tgactttatg gacgaatatt tggcacttgg tcatatggag ctcgtgccga attatgaaca      2460
     gttatcggac ccgtgttact atctgccaca ccatgctgtc atacgagaag acagcaccac      2520
     cactaaagtg cgtgtggtct tcgacgcctc cgcgcgcaca ccgaatggcc catctttgaa      2580
     cgacgcacta atggtcggac ccatagtgca agaagacctg cgatctataa tcatgcgttc      2640
     tcgaatccgt cccatcttgc tcaacgccga tattaagcag atgtatcggc aaattttgac      2700
     tgatcagcga agcaacagcc ttcagcacat tgtttggagt ccctcaccag atgcgccact      2760
     tcaaacatat gagctcaaaa ccgtcaccta cggtaccgca tgcgctccat ttctggcaac      2820
     acgagtgcta caacagctgg ctgacgatga acggactaat ttcccagaag gtgcgaccgt      2880
     tcttcgaaaa gacttttatg tcgatgactt gttctctgga gcaaacacca tcgaagaagc      2940
     tattgctttg cggaagcagc tagaaggcat actcaaaaat gggggatttg aattaagaaa      3000
     atgggcttcc aacgaatcga aggtcgtaga agacgtctca cctgagtaca aggcaatgca      3060
     ctcctcagta gatctcgaca aggacctttg tatcaaaacc ttaggactgc attgggaacc      3120
     aacctctgat gtgcttcgct ataaaatcca gcttcctccg aaatcaacaa cagaatctct      3180
     tacaaaaaga atcgctttat cccatattgc acgtttattc gacccattag gcctagtagg      3240
     tccgatcata acaacggcca agatcttcat gcaggcagtt tggacactcg tcaacgacga      3300
     aggtaagcct tggagttggg atgatgaact cccattggag ttcaaagctc gttgggaatc      3360
     ttaccaagca caacttccca gactaaacga tcttcgagta cagcgttgcg ttacgctacc      3420
     tgatccaaca acattccaaa ttcacgtttt cactgatgct tctgaacaag catacggagc      3480
     gtgtgcttat atccgcacga caaatcccaa tggagaaatt aaagtggcac tcctgacggc      3540
     taagtcgaaa gtagctcctc taaaaagaca aagcattcct agactggaac tttgtggtgc      3600
     tttgattgga gctcaactat acgaaaaggt tttggcatct cttcaactga ctgtaaacac      3660
     ctttttctgg gtggactcca cggtggttct gtgctggctg aaagcttctc cttcaacatg      3720
     ggcaaccttt gtagccaatc gggtctctaa gattcaacag gccactcaaa actgcgtttg      3780
     gaatcatgta agcggaaacc agaatccggc cgatcttatt tcgcgaggga tatcagccga      3840
     tgacctcatc aataaccatt tatggtggcg tggacccgaa tggctacagc gcgcaccaaa      3900
     cgagtggcca gtgatgaaat caaactccag taaccccgat gaagcactgc gagaatataa      3960
     gaagacgact gtcgcctctg ctccggctac cgaagaaccc tcgttcatcg accaacatgc      4020
     tgagaaattt tccaactata ctcgtatgct acgggtcacg gcgtattgtc tacgatttct      4080
     tcaaaactgt cagcgtagaa gcaatcaacg atttgcggat actcacctgg ccacggagga      4140
     aattcaaaag gcggagacca cactcatcaa gctaattcaa cagcaacatt atggttgcga      4200
     acgaaataat ctgctgaaac aacaatatat accaacgaaa tcccgtttgc gatggtttca      4260
     tccttttctg gacgacgagc aaattatgcg aatcggtgga cgaatcaacc aatcgcaact      4320
     tccattcgac agcaagcatc caataattct tccctcttcg catccctttt ctgctcttct      4380
     ggtccgatct tttcacctgc gccacctaca tgcagcccca ctgcttctaa tcaccttact      4440
     acgcctccgg tattggatca taggggccag ggatctcgtg aaaaggatcg tacacagctg      4500
     cgttgtttgt tgtcgtaatc ggccaaaaat gatagaacag ttcatggcgg agttacctgc      4560
     tgctcgtgtc actgcatccc gaccgttttc ggtcaccggc atcgactact ggggacccat      4620
     acaagttcaa gcaccccatc gacgtgcagc gccaagaaag gcttatgtgg caattttcgt      4680
     atgcttttgt acgaaagctg tccaccttga actagtttcg gatttgagta cagcaaaatt      4740
     tattcaagca ctgcggcgtt ttgtttcacg acgaggcctc tgctccgata ttcacagcga      4800
     caacgggaga aattttgtag gggcggacaa tgagcttcgt cgattgcttc gtagcgaaga      4860
     ccacaagaac gccgttgcaa aggaatgctc cgaaaaggga atcaaatggc acttcaaccc      4920
     acccagagca tctcactttg gtgggctatg ggaggcagct attgcctctg cacagaagca      4980
     tttccaccga gtactgggaa ctcgcatcct ctcatacgac gacaccgaaa cactactcgt      5040
     gcaaatagaa agctgtctca attccaggcc attgattccc ctctccgacg atccaaccga      5100
     ttttgaggcg ctcactcccg gccacttttt gactggcagc gctttaaagg cagtgccgga      5160
     ttacgattac tcatccactc cgtttaatcg tcttcggcaa tggcaacaaa cccaaaaaat      5220
     attccacgat gtgtggaaaa gatggcacac cgaatacctt gcaacactcc agccacgaac      5280
     taaatggtta aagccttcta cggacatgga cgttggacga cttgtagtac tgaaggacga      5340
     aaactctcct cccttgcgat ggcaaatggc acgaattact gaactccatc ctggggccga      5400
     cggaatcatt cgtgttgtca ctttacaaac accgaacggg aagcttcaac gtccagttgc      5460
     aaaattatgc ctactgccgg ttccaacgtc gtcatcaacc aaaacaccat cgtcttcaaa      5520
     ccgttctcct ccggaatcac ctctatcgac cagacagcta ggagaaaacc ataaacacac      5580
     ctcggatcta tcgacgacat ccttaagcga ttaatacaag gcctcttttc gaagaggaca      5640
     aggtgagaac ctgtccaatt aattaagaat ttgcgaaacc ggctaccggg tctttgtttt      5700
     gtttccacca acagcattat cagcgtaata gttcaacgtt gacatcgagc caactagcat      5760
     cacttggatt caccaatacc accgcagttg acagttaaat gacagcgtat gtcatcggac      5820
     tacccgtcgc tgaaaaccga acgagtctga tcagaaatgg gatttctgaa ggggccagga      5880
//
ID   BEL-731_AA-LTR repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-731_AA-I;
KW   BEL-731_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-523
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-523
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 613-613 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 523 BP; 172 A; 102 C; 119 G; 129 T; 1 other;
     tgttcgtgca tatgcaacac gagcgtgcac ggagaaacaa atggatcgtg aaaatgcatc        60
     tcaaaatcat ccgtgaagcc atctatacgt cgcagcagat aatccgcgtc aataggccga       120
     ctaactccga caacgtcttc atgtggcagc attggccctt cggaaatgca aacatggcga       180
     aaatggagct tccgataact cccctataaa agctcgtctt gtcagtggcg tgggttkagt       240
     attgttttga tagaaacgtc agattgataa aaatcaaata gagtaaattg aaaactagat       300
     agtgtagaag taagaatgct gcaataaagt gaactagaat tagtaataag tgaaagttta       360
     actagtggtt agtgaagaag aattgtcaaa agtgaagtta ataaaaggaa ttgaacttac       420
     ctgcattcgt ccgtgaaccg ctgaccgtca cctgaaagaa aaaggtactt acctgagttg       480
     cactccgcct ccgtccgctg ccgctgttgc tgttgacgaa ata                         523
//
ID   BEL-732_AA-I repbase;    DNA;    INV; 6578 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-732_;
KW   BEL-732_AA-I; BEL-732_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6578
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6578
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 614-614 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..6576
FT                 /product="BEL-732_AA-I_1p"
FT                 /translation="MPTLRPRPERLSIVRELSEEEAATEASCPGCNRPDAA
FT                 ERYMVQCDVCERWYHFSCAKVDEGIKDRSFSCGHCMKEQNNAAKIDSSRSS
FT                 RSSRSSSSRLANIQLQMQRLAEEQNAQEKLMQEAVDHARELREKALQQEIE
FT                 IRTNNMKQKLERELEFIKKKYNLLQNELNEDESGSVKSFGSLRSASSSVRR
FT                 WLESQTEAVSTSSGQQKAPTSSTSRTGTVPKETTAKQQAADNVQTSTSQFN
FT                 NQVSLAQVATKSRNQTVCAQVSLNPTSTSLQPLGIDQRTVSFRVAAANPTE
FT                 TFVTPSSVCGPIGHLEEDCFPSHVPVNSLNVISPPTSKQMEMARASPRISW
FT                 DSRTRANELEQKVRELQCELDRLRLQSAEQPADEDVRRRQNMQPYSRQSIG
FT                 STMVERCAGQTTRFATNVAREGMLNPTQVSFPFNQTQPVDLEHPEHHSTPN
FT                 ASAVSNISINRPTPGSLSTTSSLGYPPISSSILRPPITFVSSCSNPIMSSQ
FT                 ATTSSSVPAVVVHIGPNAQQLAARHVVPKDLPIFDGNPVDWPLFYSSYTTS
FT                 TEMCGYTDAENLMRLQRCLKGNALNAVGCQLLHPSSVPQIIATLQMLYGRP
FT                 EQVVNSLINRVRATPPPKADKLESVIGFGLAVQNLCGHLIAMNMENHLANP
FT                 TLLQELVGKLPAGIKLDWALYQRQIAQADLRAFSDYMAVIASAASNVTFST
FT                 EASVKPDKQKGREKGFINAHVEELEKKHKSHELQRPTGTSKERQPEQQRPC
FT                 NVCQRIGHKVRDCNVFKGRNIDERWKLVQQLHLCRRCLTSHGKWPCKASGC
FT                 GIEGCELRHHTLLHPGKPEDNATTSRQLPGPSEPATGKLNTHRRKQRSTLF
FT                 RILPVTLHSKYSSIDVLAFLDDGSEFTLVEKEVADQLGVKGDVEPLCLQWT
FT                 SNVTRTESESRVIPLEISGKGINKRYSLQRVHTVESLDLPTQSLKFDELVQ
FT                 QFPYLQGIPVESYGGTSPRILIGLENTELLVTLKMRAGRPSEPVATKTKLG
FT                 WTIYGTVENLHEPYQHRLLHICSGFKDMELHDAVKEFFSIENTGVMPAPLV
FT                 ESADDLRAREIMERTTIRTSSGRFETGLLWRYDYFEFPDSRPMAERRLKCL
FT                 ERRLQKSPELYDNVRQQLASYISKGYARLVSKEELLSFDPRRIWYLPLGIV
FT                 LNPNKPGKIRLVWDAAAKVDGVSFNSMLLKGPDLLTSLPAVLQRFRQRQIA
FT                 VTGDIREMFHQLLIRPEDRQSQLFLWRDHPSTDMHTYVMNAATFGSTCSPC
FT                 SAQYIKNRNAEELKNEFPEATDAIIFNHYVDDYLDSMDSVEEATKIATSVK
FT                 EVHAKAGFEIRNWLSNSTEVVRQVGEGKTSVDTKSIAADKSTDAERILGML
FT                 WQPTEDVFTFSTRFRDSIAQIMEGRIAPTKREVLKAVMSLFDPLGLLSALV
FT                 VQGKCIIQDIWRSNIGWDEKIPEEIFLRWCRWLNVFKEVDQITIPRCYFLN
FT                 YSNKSLDTLELHVFVDASEEAFACVGYFRIVDRGQVRCALVSAKSKVAPLK
FT                 PLSIPRLELQAAVIGSRLVKSIQENHTLPIRRRVIWSDSSTVLSWIKSDLR
FT                 KYRQFVAVRVSEILDATCVSEWRWVPTRMNVADEATKWVKAPNFAANSRWF
FT                 VGPEFLYQDESEWPKKILPLRDTVEELRPLHVHHRKASEPLIKYIRFSKWE
FT                 RLLRTTAFLLRYVSNIRNMARGKVAELSIVLSQKELQRAEAFLWRSVQEEA
FT                 YPDELIVLEKQQLQSNSAKLEKTSPLRKLSPFIGESGVIRQDGRIGNAHYV
FT                 SYDARFPIVLPKNHHVTGLILDWYHRQYGHCNVETIVNEIRQRFHISNLRT
FT                 EVRKQIRKCSWCTVYKAAPQPPRMAPLPDSRITPYVRPFSFVGVDYCGPFF
FT                 IRIGRSNVKRWVALFVCQTVRAVHLEVASSLSTESCKMAVRRFIARRGSPR
FT                 RIYSDQGTNFHGARKELAQEMTSINQKLAETFTNINTQWILNPPAAPHMGG
FT                 SWERLVRSVKTGLEVLSKSRNPDEETFGTVLAEVEAIVNSRPLTHVALDSE
FT                 EDEALTPNHFLMLSSSGVVQPAKLPVTSTVALKTNWGHAQHLLDLFWSRWI
FT                 KEYLPQIRGRTKWFEDSPPIKPGDLVIVVDGGMRNSWVRGKVVRTYPGKDG
FT                 RIRVADVQINSKVLQRPVTNLAVVEVQRSDIAGQTSQQYGSG"
XX
SQ   Sequence 6578 BP; 1896 A; 1483 C; 1615 G; 1584 T; 0 other;
     aaactttaag aaattttatc caaccaattt gaggttagtt ggatagttcc aaggctaccc        60
     agcagaatgc ctactctcag gccacgaccg gaacgattga gcatcgttag agaactctcg       120
     gaggaagaag cagccacaga agctagttgc cccggctgca atcgtcctga cgccgctgag       180
     cgatatatgg tacagtgcga tgtatgtgag agatggtatc atttttcctg cgcgaaagtt       240
     gatgagggaa tcaaggatcg cagtttcagt tgcggccact gtatgaaaga acaaaacaat       300
     gcagcaaaaa ttgattcgtc ccgctcatct cgatcaagca gatcatcatc gtctcgttta       360
     gcgaacatcc agttgcagat gcaacgctta gcggaggagc aaaatgcaca ggagaagttg       420
     atgcaggaag ctgtggatca tgctagagaa ttgagggaga aagcacttca acaggagatc       480
     gagatacgga ccaataatat gaaacagaag ttggagcgcg aattggagtt cattaagaag       540
     aagtacaatc ttctgcaaaa cgagttaaat gaagatgaaa gtggcagtgt gaagagcttc       600
     ggaagcctac gtagtgcatc tagctcagtt cgtcggtggt tggaatccca gacagaggcg       660
     gtctcgacaa gttccgggca acaaaaagcc ccaacttcct cgacgtcgcg aactggaacc       720
     gtaccgaaag aaactacagc taagcagcaa gcggccgaca acgttcaaac tagcacaagt       780
     caattcaaca atcaagtctc gctagcacaa gtcgctacta aatctaggaa ccagacggta       840
     tgcgctcaag tttcattgaa tcctacgtcg acgtctctcc aaccgctcgg catcgaccaa       900
     agaaccgtta gtttccgtgt cgcagctgcg aatccgactg agacgtttgt aacgccgagt       960
     tcggtatgcg gccctattgg tcatctggag gaggattgtt ttccgtcaca cgttcccgtt      1020
     aattccctca atgtgatatc accgcccaca tccaagcaaa tggaaatggc tagagcatca      1080
     cccagaatat catgggactc cagaactcgt gccaatgaac tcgaacagaa ggtacgagag      1140
     ctgcagtgtg agttagatcg actacgtcta cagtcagcgg agcaaccagc cgacgaagat      1200
     gtccgtcgtc gtcagaatat gcagccgtac agccgccaat ctattggttc aacaatggtg      1260
     gaaaggtgtg caggtcagac aaccaggttt gctactaatg tggcacgtga aggtatgtta      1320
     aatccaaccc aagtttcctt ccctttcaac caaactcaac cggttgattt ggaacatccg      1380
     gaacatcatt cgacgccgaa tgcctctgct gtatctaata taagcataaa tcgacctacc      1440
     ccgggttcct tatcaaccac tagttcgctt ggttatccac cgatttcgag ttcgatttta      1500
     cgtccgccga ttacgttcgt ttcaagttgt tcaaatccaa ttatgtcgtc acaagcaaca      1560
     acttcttctt ccgtgcctgc agtagtggtc catatagggc caaatgcgca gcaactcgct      1620
     gctcgtcacg tggtaccgaa ggatctcccc attttcgatg gtaatccagt ggattggcct      1680
     ttgttttata gtagttacac cacctcaacc gaaatgtgtg gctacactga cgctgaaaat      1740
     ttgatgcggc tacagcgttg tctaaaaggt aatgccctca atgctgttgg ctgtcaactt      1800
     ctgcatccgt cttcggtacc acaaatcata gcaacattac agatgttgta tggtcggcct      1860
     gaacaggtgg ttaatagtct tatcaacaga gttcgtgcta caccgcctcc gaaagccgat      1920
     aaattagaga gtgtaatagg ttttggactt gccgttcaga acttgtgtgg acatttaata      1980
     gccatgaaca tggagaacca cttggcgaac cctactctat tgcaagaatt ggtcggcaaa      2040
     ctacctgctg gtatcaagct agactgggcg ctttatcaac gacaaattgc tcaagcagat      2100
     cttcgagctt tcagcgatta tatggccgtg atagcgtcgg ctgccagtaa tgttaccttc      2160
     agcacggaag caagcgtaaa accagacaag caaaagggaa gagagaaggg ctttatcaac      2220
     gcacatgttg aagagttgga gaagaaacac aaaagtcacg aacttcagcg cccaacagga      2280
     acatccaaag agagacagcc agaacagcaa cgaccgtgta atgtatgcca gagaatcggc      2340
     cataaagtta gagattgcaa cgtcttcaaa ggccggaaca tcgatgaacg ttggaagttg      2400
     gtgcaacagc tccatctctg cagacggtgt ttaacttccc atggtaagtg gccatgcaag      2460
     gcatcgggtt gtggcataga agggtgcgag ttgcgacatc acacgctgtt acatcctggt      2520
     aaacccgagg ataacgcaac aacatcccga cagctgccgg gaccaagtga acctgctact      2580
     ggaaagctga atacccatcg gcggaagcag cgatctactc tttttcgcat ccttcccgta      2640
     acgttgcata gcaagtattc ttcaatcgac gtcttagctt ttctcgacga tggttcagaa      2700
     ttcaccctag tggagaagga agttgcagat caactcggag ttaaaggaga tgtagaacca      2760
     ctttgtttac aatggacaag caatgtaact cggactgaat cggagtcaag agtaatcccg      2820
     ttggaaattt ctggaaaggg tatcaataag cgctattcct tacagcgagt acatactgtt      2880
     gagagtttgg atttgcccac tcagtcgctg aaatttgatg aacttgttca acaattccca      2940
     tatctacaag gaataccggt agaaagctat ggtggaacct cacctagaat tctgattggt      3000
     ctggaaaata ctgaactact agtcacattg aagatgcgtg ctggtagacc atcagaacct      3060
     gtagcgacca aaactaagct gggctggacg atatatggaa cggtcgaaaa cttacacgaa      3120
     ccatatcaac accgtctttt acacatctgc tctggtttca aagatatgga acttcacgat      3180
     gcggtaaagg aattcttctc gatagaaaac accggtgtaa tgcctgcacc cctggttgaa      3240
     tcagctgatg accttcgcgc tcgagaaatt atggaacgaa ctacgattcg tacatcttca      3300
     ggacgattcg aaaccggttt actatggcgc tacgattatt ttgagtttcc ggacagcaga      3360
     ccaatggcgg agcgacgtct caagtgcctc gagcggagac tgcagaaatc accggaactt      3420
     tacgacaacg tcagacaaca gttagcttct tatatttcca agggatatgc tcgtctggta      3480
     tcaaaggaag aattgctgag tttcgatcct cgtaggatct ggtatctccc acttggtatc      3540
     gtcttaaatc caaacaagcc agggaagatt cgcttggttt gggatgcggc agcgaaggtg      3600
     gatggagtgt cgtttaactc tatgctgctt aagggaccgg acctgctcac gtccttgcct      3660
     gcagttttgc agcgtttccg gcagcgtcaa atagcggtga caggtgacat cagggaaatg      3720
     tttcaccaac ttttgatacg ccctgaagat cgtcaaagtc agctctttct atggcgggat      3780
     catccatcaa ccgacatgca cacctatgtc atgaacgctg ccacgtttgg ttcgacatgc      3840
     tcaccgtgtt ccgcacagta tattaaaaat cgcaatgcgg aagaattgaa gaacgaattt      3900
     ccagaagcaa cggacgccat aatattcaac cactatgttg acgattatct ggatagcatg      3960
     gattccgtag aagaagcgac aaagatagca acgtcagtga aggaggttca tgcaaaagcc      4020
     ggttttgaaa ttcgaaactg gctgtcaaat tcaacagagg tcgtcagaca ggtcggggaa      4080
     ggaaaaactt cagtcgacac gaaaagcatt gcggctgata aatcaacaga cgctgagcgg      4140
     atccttggga tgctgtggca gccaacggaa gatgtattta ccttttctac acggtttcga      4200
     gatagtatcg cgcagatcat ggaaggtagg attgctccga cgaaacgtga agttttgaag      4260
     gctgtaatga gcctgtttga cccactcggg ctattgtctg ctcttgttgt acaaggaaag      4320
     tgtatcatcc aagacatttg gagatccaac atcggctggg acgaaaaaat tcccgaagaa      4380
     atctttcttc gttggtgccg ttggctaaac gtattcaaag aagtggacca aataacgatt      4440
     ccgcggtgct actttttgaa ttattcaaat aagagtttgg acactttgga gcttcatgtg      4500
     ttcgtagatg ctagcgaaga agcttttgct tgtgttggct attttcgtat agtcgatcga      4560
     ggacaagtgc gctgcgcact cgtatcagct aaatctaaag tcgctccgtt aaaaccctta      4620
     tcaatcccac ggttggaact gcaagcagcg gtcataggaa gcagattggt aaagtcgatt      4680
     caagaaaacc acactcttcc aattcgtcgt cgagttattt ggagtgattc tagtacggta      4740
     ttgtcttgga taaaatcaga cctacgaaaa tatcgtcaat ttgtggcggt tagagtcagc      4800
     gagatcctgg atgcgacctg cgtatcggag tggcgatggg ttccaacgcg tatgaacgta      4860
     gctgatgaag ctacgaagtg ggtaaaagca ccaaacttcg ccgccaatag ccgatggttc      4920
     gttggaccag aatttttgta ccaggatgaa tcggagtggc cgaagaaaat tcttccctta      4980
     agagacactg ttgaagaact acgcccgttg catgtccacc atcggaaagc ttctgaacct      5040
     ctaattaaat acatcagatt ttccaaatgg gagaggttac ttaggaccac agcatttctg      5100
     cttagatacg tcagtaacat aaggaacatg gctcgtggta aagttgctga gctaagtatc      5160
     gttttgtcgc agaaggaact acaacgggct gaggctttcc tttggcgatc tgttcaagag      5220
     gaagcatatc ctgatgaact aattgtcctc gaaaaacaac aactacagtc gaactcagca      5280
     aaattagaaa agacaagccc actgcggaaa ctatcaccgt tcatcggaga atcaggagtg      5340
     atcaggcagg atgggcgaat tggaaacgct cactacgtgt cttacgatgc aaggttcccg      5400
     atagtgctgc caaagaatca ccatgtaact ggcctaatct tggattggta ccaccgtcag      5460
     tacggacact gtaatgtaga gacgatagtc aatgaaattc gccaaagatt tcacatttcg      5520
     aatctgcgca cagaagttcg taagcaaata cggaaatgca gctggtgcac agtctacaaa      5580
     gcagctcctc agccaccgag aatggcaccc cttccagatt ctcgcataac tccgtacgta      5640
     cgtcctttct cgttcgtcgg ggtggattat tgtggaccgt tcttcataag aatcggccga      5700
     agtaatgtga aaagatgggt agcattattt gtttgtcaaa cagtaagagc ggttcatctg      5760
     gaagtcgcta gcagtctgtc gacagagtcc tgcaaaatgg ccgtacgaag attcatcgca      5820
     agaagaggat caccacgaag gatctacagc gatcagggga ctaattttca tggagcaagg      5880
     aaggagttag cccaagaaat gactagcatc aatcagaaat tagcggaaac cttcacgaat      5940
     atcaacactc agtggatcct caaccctcct gctgccccac acatgggtgg atcgtgggag      6000
     agattagtcc gctctgtgaa gacgggttta gaagtactct cgaagagcag aaatccagat      6060
     gaggaaacgt ttgggacggt attagccgaa gtagaagcca tcgtaaattc taggccgttg      6120
     acacacgtcg cgctcgattc agaagaagat gaagcactca caccgaatca ttttttgatg      6180
     ctaagttcca gcggtgtggt gcagcctgct aagcttccgg taacgtcaac cgttgcgctc      6240
     aaaactaatt ggggacatgc gcaacatctt ctagatcttt tctggtctag gtggataaaa      6300
     gaatacttgc cgcagataag gggtcgcacg aagtggttcg aggactctcc acctataaag      6360
     cctggcgatc tggtgattgt ggtagatgga ggtatgcgga acagttgggt tagaggaaag      6420
     gtcgtgagaa cataccctgg caaagacggc aggattcgtg tcgctgacgt ccaaatcaac      6480
     agtaaggtgc ttcaacgacc agtaacaaac ttggcggtgg tcgaggtgca aagaagcgat      6540
     atagctggac agacctccca gcaatacggg tcggggaa                              6578
//
ID   BEL-732_AA-LTR repbase;    DNA;    INV; 495 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-732_AA-I;
KW   BEL-732_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-495
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-495
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 567-567 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 495 BP; 197 A; 84 C; 80 G; 133 T; 1 other;
     tgttagcgac ggtcactcgg tgtatactgg ccttgaaccg atcacaaatt ctgacaggac        60
     gactgacatt gacaggacaa attacaatga tgagacaact gacattgaca ttgagaaaga       120
     aaacagaaaa gaaagtagta actgatatca catgtgcaaa tcaaaactta tatcttatta       180
     gtacatatta gttaaaatct ttactgaatt tgtatcctaa tcgtaagtaa aaacatgaat       240
     ttatacgtct atgaattagc taaaatgaac atttatatga aatagattac atgcagaaag       300
     tcgattccat aagactgaca cagtggactt tacacgtgaa gaggattaaa atttgtaagt       360
     ctaacacatt aaaaacactt aaagttaats taattatcac ataataaaac atttcagctt       420
     aaagcattca cacaccaacg ctgggtttgc taaagaagat ccgaaaactc acagaggtcc       480
     atatcgtcag caaca                                                        495
//
ID   BEL-733_AA-I repbase;    DNA;    INV; 7408 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-733_;
KW   BEL-733_AA-I; BEL-733_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7408
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 584-584 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 7408 BP; 2028 A; 1775 C; 1753 G; 1852 T; 0 other;
     ttaaatttgg tccttcgagc cggatccgtc gaccggtggc caaagttcag tgcgagaaac        60
     tgcggacagt agtgcgcaca atagtgtcga acaatcgtta ccgccattgc ggtcagtgca       120
     tattgtgtgc gccggcattg tagattcgcg ccaagaagtg catcgaagaa agaaaaatcg       180
     acggcgtcca ggggcaagca gattgatcgc tccgtgagag ggaatagctg attgtggatt       240
     accagtggag cagccaggca gcaggaacgt gtaggatcga gacgaaactg gctcccaagg       300
     accagactaa agggaagtag ggtggcatgt gtgcatgtgg tctgtagtga cgccaagcat       360
     gagggtcact gatctgtgaa tagatgggtg agataaataa agattagatg gtaaggagga       420
     atccattttg gcctgttttc ctttgcatgc gaacttagag ctgatccttg aattgggttt       480
     cccgattgac ggttggtctt gatttctgcc ggatttctaa agcttgtttt ttcgcttggt       540
     cggttcccct cgctgcagtc aacctatttc gtctgtcttc tgtcgtacgt gggacgtcga       600
     gttgaatcgc gcgtcgtggg tggattcttc tagtacacag tgagaggaat tagtgctagt       660
     ttgaaatagt agttggttgt gcaatcaatc aattacactg tgcaagtgac attgaaccat       720
     ttatcagtga aagtgtttcc atttatttgg caaaattagt taatgcagcg tgaaaaaagg       780
     gtgaaaatga ccagtgaact gaaagattta acgaagcagg aacgccagct tcgcaacacc       840
     gtcgacggaa tgcggaagtt tatttccaag tataagccgg aaaggcatct cgatcaagtg       900
     gatgctagac tggatatgtt ggagaatgcg atgcaaaagt tttacgtagt ccgtcggagg       960
     attgatgtgc tcttggagga agctgacgaa aaacttgtgt ccgaatcaaa ggatgatccc      1020
     gatgaaaagg ctgaactcct aacagcttta atcgagaagc gacaaaacga gagtgccaaa      1080
     ttgattgaaa ctgtcgagga tacgttctgc gagttgaaag cagcattgca gaaattgcta      1140
     gcttcttcga gtaggccttc aacgtccggt gaacaaccag ctcccgtgtt gcctagtgcg      1200
     gtatctcgag taaagcttcc tgaaattcgt ctacccagct ttggaggccg tattcgcgac      1260
     tgggtcacat accgtgacat gttcaggagt cttatccacc gaaatgaaca gttgtcagag      1320
     atggacaagt tctcttacct acgttcgtcc cttgtcggtg aagcactgga agcaatatcg      1380
     tcgattgaaa tgacttctgc taattatcca atagcttgga atggtcttca ggagcgatat      1440
     gagaacaaga agctcatagt taaggcacat ctcgatgcgt tgtttagcgt tgagccaatg      1500
     aaacgcgaaa gctacgaaac cctcattcac gtcattaacg aattcgatag aaaccttcag      1560
     caactggaga aaatcggcga agttacaaca gggtggagta caatactggc ctatatggtg      1620
     tgctctaagc tcgattccac gacgctgcga caatgggagt ctcatcacgc ttcaacggat      1680
     gttcctgttt acggcgattt gatggagttt ttgcgcaagc aggcttcggt tctacaatcc      1740
     ttgacatcgt cgaagtcgag ccaaccggct gaagtgaaga agcccaaata tacggttagt      1800
     cacgctacgt cacagtttcc caggaattgt ccattttgtg gggagaatca gcattccgcc      1860
     ttcagatgcc agaagttttt aaagatgaag gtccaagaac gctatgagaa tgtaaaacgc      1920
     agtgggttgt gtttgaactg tttttcgtcg tctcacatgg ttcgatcctg tacgagtgga      1980
     acttgccgga actgtcatca aaggcatcat acactcttgc acatcgggtc agccaacgca      2040
     ggagctgctt caacgtcgcc agcgatcggt tcctccgtcc cattagtaca aaaccgacca      2100
     caaaaagcga acaatcaaca aacacaagct cagaatcaga cacccactca aaaccctgga      2160
     tcactaacaa gctcacaccc agtagtcacc acaagttcgc atccaccaca atcacaccca      2220
     tcacacgcta cagaccgctc actagttacg caaacaaatt ccctatcaac cagtacatca      2280
     tcgccaaccc ggcaggtgtt gctgtctacc gccttagtag tagtaacaga tcagaacggc      2340
     agttcaaaaa ttgccagagc attattagac tcctgttcgg agtactgttt cgccacttca      2400
     aaattttgtc agaatctgaa gctcctcagt tcagacagcc gtctaacagt ttccggaatt      2460
     ggtggctccg tcgtgcggtc atcaaagacg gtggaagcaa atatatctcc acgattccat      2520
     agcatttcgt cgtacagaga aactgttcag ctacacattc ttccgaaact caccgctaca      2580
     ttaccggttg agagtgtagc aattcgaagg ctagtagttc ctgaaggcat cgtcctagca      2640
     gacccaggat ttcatgaacc cgggccagtt gatttgatca ttggtgccga gtattatttc      2700
     gatttgctga aagagggtcg taagaagatg tcagctgatg gacctacttt ccaagaaacc      2760
     gtgttcggct gggtggtgtc cggccgtgtc ccaggaagag tagaagaagt ttcaagagcc      2820
     atgacataca tgtgttcaac ggtagacctc agagaattgc tgacaaggtt ctgggagtta      2880
     gaatcctgct acaggaaagg cacgctctcc gtagaagaat cgatgtgtga ggagatcttt      2940
     cagcgcacaa cagttcgaga caacgacgga aagtttgtag ttacattacc gaagaaagaa      3000
     tacgtcattg atcggctagg tgaatccaaa actattgccc tcaagcgttt ctatggttta      3060
     gagcgccgct tcgaaatgaa tagtaaactg aaggcattgt attgtgactt catacacgaa      3120
     tacttgtcta tgggacacat gcgcgaagtc ctgtccgaag atttcgaagg tccggcatat      3180
     tacatgccac accacgccgt tttgaagcca gaaagtacga ccacaaagct gcgtgtcgtc      3240
     tttgacgcat catgccgaac ttccaccggg gtgtcgctaa atgatggact catggtcgga      3300
     ccggttgtcc aagatgattt gttatctatc attctacgat tccgattcca caagtttgtg      3360
     gtagttgcgg atgttgccaa aatgtaccgc atggtgaatg tgtgcgaagc cgatcagcct      3420
     cttcaacgca ttctttggag gagttcgaca agcgatcccg tgaaaactta ccagcttaca      3480
     accgttacct acggtaccag ttccgcccct tacctcgcta caaaatgcct tcaacagtta      3540
     gcagcagata ccgaggcaac acatgggaag gcagcttcaa cgattcggaa gagcttctat      3600
     gtagacgatc ttctcacggg tacggacgat gtagaagaag gcaaggttct agtagcggag      3660
     ctgttggatc taatgaacac cgctggcttc actctgcgta aatggagctc caattgtccc      3720
     gaaattcttt caagcattcc tgaggatctt cgagatgaac gagctactct agaattggat      3780
     tcatcatcat cgccagtcaa aactctcggg cttatttggg agcctgccac tgacatgttt      3840
     tgttatgcgg taccacagtg gagtcctcaa actcctatca ccaagcgcat tgtgctatct      3900
     gataccgcac ggattttcga tccacttggt ttgattggcc ctatcgtggt tcaagcgaag      3960
     attttccttc agtcactctg gaagcaaggc tgtgagtggg atgatccact tcccgatgaa      4020
     tgccagaact tttggctgga gttccgtcgt aacacgctcg ctctcgaatc actcaagatt      4080
     cctagatgga cttcctatac tcaaggtcta ctcagtgtag aactacacgg attttgtgat      4140
     gcgtcggaag cagcatatgg agcatgcttg tatctccgct gtgtatcaaa taatggagcg      4200
     ataaccgtta gattgataac gtccaagtct agagttgcgc cattagaaga cttggctcgt      4260
     aagaagaaaa ggcagtctat tccacgtctt gaattgtcgt cggccttgtt gatgagccat      4320
     ctatacgaaa agtttgccga aagtctccaa actccgttcc aagcattctt ttggacggat      4380
     tcaatgatcg tcaaatgctg gttgtcatca ttaccctctc gttggcaagt ttttgtcgga      4440
     aatcgtgtat cagaaataca gcacatcact aaaaatggtg tatggaatca tgtcgctgga      4500
     gccgaaaacc ccgccgatgt tctctcgcgt ggtacgacgg ctgctcaact gcaatatcag      4560
     tcatcgtggt ttgaaggtcc catctggctg cgccaggaac gttcaacatg gccaaaacct      4620
     tcgtcaacgc aaccatcaat ggaccgttcg ctgctggaag aacgaagcac tatatctcta      4680
     ccctctcgct caagcccgcc gaatgaactc ttctcacttc gctcgtcgct cactgatctg      4740
     gttcgtctgg tggcttggct tcggagattt caacacaaca gttcgccgtg caatcgctca      4800
     gccagacaaa ctgggtgttt gtccatttta gaattgaatg actcattgga caatctcgtt      4860
     cgcatcgccc aacaagaaag ctacccggaa gaatttgcag atctgacgcg gagccgccct      4920
     ctgaaatcat cgtctaaatt gtcgttgttg aacccagttt tcaaggatgg gatactccgc      4980
     gtcggcggcc ggctatcaaa tgctccaatt acagaatccc gcaagcatcc gatgattttg      5040
     caccaccaac acccgctagc gacgctagta atgcagcatt atcatctcaa gctctttcac      5100
     gctggtcaac aactcttaat tgcatccgtc agagaaaagt tctggccaac gaatgctcga      5160
     tgtctggccc gcaaaatttg ccaccagtgt gtccaatgct ttcgcagtaa accgaaagta      5220
     catgaacagt taatggcaga tttaccggct gtacgtgtta gtcccgccgc agtatttggg      5280
     agagtaggag tagacttgtg cggcccgttt tatatcaagt atcctatccg ccggagccca      5340
     gcagtcaaat cctatgtagc aattttcgtt tgcctagcga caaaggcagt ccatatggag      5400
     atagtggctg atttgtctac gcaggcgttt ttgtccgcgt tcaggagatt cattgcttgt      5460
     cgtggaaaac cacaatcggt aatgtgcgac aacgctacca actttgttgg agccaataga      5520
     gagttggaag agcttcgcca tcaattcctg gaccagcaat ttcagcgtac cataatccgt      5580
     tcagcagaag acgacggcat aaagtttgat ttcatccctg cacggtcccc taatttcggg      5640
     gggttatggg aagccgccgt aaaatcgttc aagggccatt ttcgtagaac aattggaacc      5700
     aagcagctca cttacgacga actgaacacc gttgtacagc aagttgcggc cattttaaac      5760
     tctcgtccgc taacccctct gagtaatgac cccaacgact tcgaagcatt gaccccaggc      5820
     cactttctga tcgggagacc cctcacagct ttaccggaac ccgaactaca aggaattccg      5880
     gagaatcgtt tgtccatgtg gcaaaaatcc caagatttcg tccaaaggct gtggcaaagg      5940
     tggaaaaccc actatttatc cgatcttcac aaccgtacaa aatggatgaa acagcgagac      6000
     aacattcaaa ttggcacgat ggttctcgtc aaggaggaca acttgccacc acagcgatgg      6060
     cagttgggac gtgtagcgga aatattccca ggaaccgatg gaaacgtccg cgtggtcatg      6120
     gttcgcacca aagatgggtc cttcaaaagg gccatttcaa aaatttgcgt ccttccaatc      6180
     agggacaatg cgtccacttc tggagagttc tgatactctt ccatcgccgg tgcgccggca      6240
     tcgcggaggt cgtccaaaag gagacctccg ctcaccagtt aagtatatgt ataataagta      6300
     attgcaaaaa gcttaaggaa tgtttgtccc ccatagtctc ctaacgtgtc ccaggacggg      6360
     gacacgcatc gaagaagttg tcatcaagtc cattcatcca ttccgtcaat cgctgggaga      6420
     aggtcgtcac gtgtcgtcaa gcatgattta tgtgtggtgt cgaatgaagc atttcgaatt      6480
     cgtctgtcta ttctggttca tcaagtcgtc gaggaaatca ttcctacaaa catcaaactt      6540
     taatccattc acttcgtcag aatcacagtt cagcatcaca gttcgctatc acatcacgga      6600
     gtaaaccact cgagcaccag gtaccaatgt tcgtccagct gttgtcgtgc cgacaaacca      6660
     tcatcaggga ctgatcaacc caatccgatg gcccagtcaa ccgcagcaat ggcaatgtag      6720
     aactccagtg acagcatgtg atcatcgtca gcatagtttg aacggcatcc cagtcgtttt      6780
     tcatcggtgc caagggcact cgcggaggcc aggaggcctc cgcatcaggg aagtctcgtt      6840
     aatgttcttt ctttcaattt aaaaagcagc ctctcatctg cagattcgat tgatgccacc      6900
     atccaaagaa cgtcgtcgac gaaggtctcg atactgacga cgacaatgat gacctgttca      6960
     acgaagctta gacgacaagt gttcaaccca atccaaccat ccgtccaaac gtgtccaaga      7020
     gcaacaggtg tccaattcga tacagtccaa gttcagcaac ccaacccgtt ttgaagttca      7080
     agcagacagt caatctccaa caacccctca tcgtctaaag atgaattcgt atccagcaac      7140
     caaccagtca acgtagtaaa caaacatcaa catcgatcgg cagccgctga gaacaataac      7200
     cattggtcag atgtgggcca aggtcatcga agtgtttatt aaccgaagaa tgcgaagcag      7260
     gagaattagc aatagatcta aaaacaaact gaagtcaata taggagaatt accgtagtag      7320
     tatgaagtaa gctaggtaga tacagtgtag gccaaaatta ttacaacctt tcttgaattg      7380
     aaattaggag atttcaaggc ggccggca                                         7408
//
ID   BEL-733_AA-LTR repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-733_AA-I;
KW   BEL-733_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-415
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-415
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 588-588 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 415 BP; 104 A; 97 C; 92 G; 122 T; 0 other;
     tgttcgcgcg caatattttc gacccttctg gcagcacgct taagttccac aaattgttaa        60
     ctgttgtggt ctcgctttat cacccgccaa ttagattccc tttcttatca ctgctaaccg       120
     atagagcgat agaagcgatc gttccgattg tattatggtg aaattcacca ctcaccctcg       180
     gtatcattgt cgatatcgag gcagtagtta gttataattg cgcagcgcgc gagttcgcat       240
     cgaatagagt ttgtcgaagc aaagactacc gagcaataaa ctttcgtttt actcaatcgg       300
     agtttcaata aacggttgtt cgtcttcagt taaagtgcgc gtttctaagt ctcgaagaac       360
     gaaagtgccc aacgtgtccg aagtgttctc cgcgtgacgg tccggatagt gaaca            415
//
ID   BEL-734_AA-I repbase;    DNA;    INV; 5850 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-734_;
KW   BEL-734_AA-I; BEL-734_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5850
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5850
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..5793
FT                 /product="BEL-734_AA-I_1p"
FT                 /translation="MVNKHTKKTKKLLLKRNNIIGSVQLIKEYDENYVFNR
FT                 DFPQLKFRLEKLDSMWDKFNEVQAEIEFEDEESEEFSVERIEFETQYFELK
FT                 GSLASKLAVGAERGDRSFSSPGAPPAHLPSVRLPELKIPDFSGDYDEWMNF
FT                 HDLFTTLIHTNAQLSAVQKFQYLKTLLKGDALRLVQSITVSAANYAIAWDL
FT                 LKRRFDNKNLLIKQHFSALMSTPSVRKESSSALYNLADEFDKHVSVLNKLE
FT                 DPREHWNSFLVELLSSKLDPLTQKEWENQLKDNVRPVYADLVAFIQKRSRI
FT                 LQSITLSQPSPPVSKTESKHESKPFRSKTSSYHTANSDNTPKCILCKQSHT
FT                 LSQCDEFKKLTPQKRFELAKRQGLCLNCLKSSHLMKNCSAGSCRTCNKRHH
FT                 TLLHLNPQSATSTDNHERSVAAQVGQCQQPSRSASDVESPLPVSCIADQCH
FT                 VVPRDMGSASSPSDRPDNRSFSSSSTSGRQVTPSSSGHNSSQVTNCQTVTP
FT                 SQAFVSKACMSSVFMLTAYVKVKHVDGSQILARALLDCASEANFVTESLAQ
FT                 RLCSKRAPANIDVYGISQSVKQVKHKTIITVSSRYGSYTSSMEFLILPTLT
FT                 RILPTATVDISKCCGEVPRHLPLADPKFNIAHDVDLIIGIKNFFTILENNQ
FT                 ISLGKGLPVLRKTVFGYVVAGEAEERTTPTVVCNVSSIDNLESMVHKFWEV
FT                 ESFDKGKALSLEELYCENHFRKTHHRASDGRYVIRLPIRREMLDALGESYK
FT                 IAERRFSAIEKKLSADPQLHKEYSQFMDEYLSLGHMEEIHADFPPSIPHFY
FT                 LPHHAIQRPDSTTTKTRVVFDASCRGSNNVSLNDLCYVGPTVQPPLISTLI
FT                 NFRLPRYAVSADAEKMYRQVWVDPEDCMLQLILFRKNPTEKLKTYRLKTVT
FT                 YGTAPAPYLATRVLNQLAEDEADKYPLAAPKVVKCFYVDDYLSGDDNEQRL
FT                 VETNCQLIELLRSGGFNMRKWCSNSPTVLSNIPESLRDSRTTLEISQSDSV
FT                 KTLGLLWHPQLDEFSFNVPEFASSEPITKRLVLSEMSRLFDPMGLVGAVIV
FT                 GAKIFLQSLWMEKFSWNDVLPEDYQAWWRQFRHEITTLASLRIPRRILAND
FT                 HQSLEFHVFSDASDHAYGCCIYVKSASYTGEQHCNLVMSKSRISPLRKLST
FT                 PRLELCAAVLGAQLADLVLESTNIKCPVTFWTDSAIVLHWIASSSSSWKVF
FT                 VSNRIAEIHRLTSGSMWRHIPTELNPADKISRGVSPSHLKGDSLWWYGPPF
FT                 LRQNSDSWPENCIKLTPLHSEARRSESRQIVSVVVSTNCSSIEFIEQHSTL
FT                 SHLQRKVAWILRFSNNCRTQFLRNRRFGPLSHTELDNALMHLIKQTQLVYF
FT                 SAEIEFLKKHNGRVHKAFAFKSPLKTLCPFLDSDDLLRITGRLQHLNVPYD
FT                 TKHPLILPQKAHLTLLIVRSIHRSMLHAGPQLLLSTLRQRYWPVRGRDLAK
FT                 KVVRECITCFRCRPHSICQIMGPLPAARVTPSRAFTHCGVDYCGPFSVSIP
FT                 NRRGPSVKVHVAIFVCMSSKAVHIDMVYNLTSDSFINILKRLVGRRGRVSD
FT                 IYCDNARTFVGANRILEENRKQFDAMHQSQGLHTFCAETGINFHFNPARSP
FT                 HCGGLWEASVKTFKYHLYRVMKDTVINTDDFSTLIIQIEGIMNSRPLCPLS
FT                 SDPADVVALTPGHLLVGEPLFSLPEPDLSNLPMNRLNSFQRMQRGLQHFWK
FT                 AWSRDYVAQLQDRKRWPTVHPDIKIGVLVLLKDDNAPPMHWNLGRIEQVFP
FT                 GKDGHIRVVQVRTAHDHYRRAITEICPLPIEDPSCQQPTTH"
XX
SQ   Sequence 5850 BP; 1590 A; 1484 C; 1266 G; 1510 T; 0 other;
     tttttggtgc cgaaacccgg gactgccagg tcccatctat cgctatcggc cggactgaag        60
     gattagcgtg agtcactctc agactagaca tcgttgctgt tccaagcttc acgtaatcat       120
     catccggatt aactgctgca tcggcaacag ttctcgacct ggacgtcgat tgggacaacg       180
     gaaattgcca gtgtggaatt ttgtcgcgaa caaggaacgc aggtcacgcc acgtgagccc       240
     aggtaacgca caggagacaa aaagtgagta gaccaccatt tcgattccac cagaacacat       300
     tgttctcctg tgtttcattg ttaatcacaa taattgggcg gcaaagagtt acgcaatatg       360
     gtgaataagc acaccaagaa aaccaaaaag cttcttttga aaaggaacaa tatcatcggt       420
     tccgttcagc taataaaaga atacgatgaa aattatgtgt tcaatcgcga ctttccccaa       480
     ctaaagtttc gactcgaaaa gttagacagc atgtgggaca aatttaatga agtgcaggcc       540
     gaaatagagt ttgaagatga ggagtcagag gaattttctg ttgaacgcat tgaattcgaa       600
     actcaatatt tcgaattgaa aggctcatta gccagcaaac ttgccgtcgg tgctgaaaga       660
     ggagatagat ctttcagctc tcctggtgct ccacctgcac atcttccttc tgttcgcctc       720
     cctgaactga aaattccgga tttcagtgga gattatgatg agtggatgaa ttttcacgac       780
     cttttcacca ctctaatcca caccaatgcc caactttcgg cggtacaaaa atttcaatac       840
     ttgaagactc tactgaaagg ggatgcgttg cgactcgtgc aatcaattac cgtctcagcg       900
     gcaaactacg ccattgcttg ggacttactt aaaaggcggt tcgataataa aaatctgctt       960
     ataaagcaac atttttcggc attgatgtcc actccttcag tccgcaaaga atcgtcgtct      1020
     gcgttgtaca acctggctga tgagttcgac aagcacgtga gcgttctcaa taaactggaa      1080
     gatccaagag aacattggaa ttcctttctc gtagaattgc tcagcagcaa actcgatccg      1140
     ttgacgcaaa aggagtggga aaaccagttg aaggataacg tacgaccagt atatgctgat      1200
     ctagttgcct tcatccaaaa acgatctcgc attttgcaat ctattacgct ctcccaacct      1260
     tcaccacctg ttagcaaaac cgaatcaaaa catgagtcca aaccatttcg ttcgaagacc      1320
     tcctcgtatc acacagccaa tagtgataac acaccaaaat gcattctatg caagcagtcg      1380
     cacacactgt cgcagtgcga tgaatttaag aagctaacac cacaaaaacg tttcgagtta      1440
     gctaaaaggc aagggctttg tttaaattgc ctaaaatcat cacatttgat gaagaactgc      1500
     tctgccggtt cttgtcggac ctgcaataaa cgtcaccaca cactattgca tttgaatccg      1560
     caatctgcca ccagtacaga taaccacgaa agatctgtgg cagcgcaggt tggtcaatgt      1620
     cagcaaccct cacgatcggc ctcggacgtc gaatcgccgt tgccggtttc gtgcattgcc      1680
     gatcaatgtc acgtggtccc tcgcgatatg ggatcggcct cgtcgccgtc ggataggcca      1740
     gacaatcgtt cgttttcgtc ttcgtcgacg tcgggtcgac aagttacacc gtcaagctct      1800
     ggtcataact cctcgcaagt gacaaattgc caaaccgtca cccctagcca agcgtttgta      1860
     tcgaaagcat gtatgtcgtc tgtattcatg cttactgcgt acgtgaaagt caaacacgtt      1920
     gatggcagcc aaattctagc tcgcgcactg ttggattgtg catctgaagc caattttgtg      1980
     accgaatctc tcgctcaacg tctttgttcg aaacgtgcac ctgccaatat cgatgtgtac      2040
     ggtataagcc aatcggtcaa acaagtgaag cacaaaacca ttataacagt gtcctctcgc      2100
     tacggatcgt acacgagcag catggaattc cttattctgc ccactttaac cagaatccta      2160
     cccacagcaa ctgtcgacat ttcgaagtgt tgtggcgaag ttcctcgcca cctccctctt      2220
     gctgatccca aattcaatat tgctcacgac gttgacctca ttatcggcat taagaacttc      2280
     ttcactattt tggaaaataa tcaaatatct cttggcaaag gtttgcccgt gctccgcaaa      2340
     acagttttcg gttatgtcgt cgccggtgaa gcggaggaac gaactactcc aaccgttgtc      2400
     tgcaacgtct catcgatcga caacctggag tcgatggtac acaagttctg ggaggtggag      2460
     agttttgata agggcaaggc gctatcattg gaggagctat actgtgagaa tcactttcga      2520
     aaaactcatc acagagcctc tgacggtcgg tacgtgattc gtttgccgat tcgtagggaa      2580
     atgcttgacg cgttgggaga gtcgtacaaa attgctgaac gaaggttctc agcaatcgag      2640
     aagaagctgt cggctgatcc acaactacac aaagagtact cacaattcat ggacgagtac      2700
     ttgtctttgg gtcatatgga ggaaattcac gccgattttc ccccttccat accacacttc      2760
     tatctacctc accatgcgat tcagcgaccc gacagcacaa ctaccaagac acgtgtggtg      2820
     ttcgatgctt cgtgtcgtgg tagcaacaat gtgtctctga acgatctttg ctacgttggc      2880
     cccacggttc aaccaccatt aatttccacg ctgatcaatt ttcgccttcc ccgatatgct      2940
     gtcagtgctg atgctgaaaa aatgtatcgg caagtgtggg tcgatcccga agattgcatg      3000
     ttacaactga tcctgttccg aaaaaatcca accgagaaat tgaaaaccta tcggctgaaa      3060
     acagtgacgt atgggactgc gcctgcccca tacctcgcaa ctcgcgtcct caatcagctt      3120
     gccgaggacg aagctgataa ataccccctc gctgctccta aggttgtgaa atgtttctac      3180
     gttgatgact atctctcggg ggacgacaat gaacaacgat tggtggaaac gaactgccaa      3240
     ctaattgagc ttcttcggtc tggtgggttt aacatgagaa aatggtgtag taatagtcct      3300
     actgtgctct cgaacattcc tgaatcacta cgagactctc gcacaacact cgaaattagc      3360
     caatcagatt cggtcaaaac ccttggactc ctttggcatc cgcagctcga tgaattcagt      3420
     tttaacgttc cagaatttgc ttcttctgag ccaatcacaa aacgtttggt tctgtctgaa      3480
     atgtcacgct tgttcgaccc gatgggccta gtgggcgcag taattgttgg ggcaaaaata      3540
     tttttgcaat ctctatggat ggaaaaattt agctggaacg atgttttgcc agaagattat      3600
     caagcatggt ggagacaatt tcgacatgag atcacaacac ttgcttcgct ccgaattcca      3660
     cgacgtattc ttgctaatga tcatcagtcg ctggaatttc atgtattttc ggatgcatcc      3720
     gaccatgctt acggatgttg catttatgtc aaatctgcca gctatactgg agagcaacac      3780
     tgcaacttag tgatgtcaaa atctcgtatc agtccacttc gcaaactctc aacacctcgc      3840
     ctcgagttgt gtgcggcagt actcggcgct caactggctg atttagtatt ggagtcaacg      3900
     aacatcaaat gtccagtaac tttctggact gactctgcaa tcgtgctcca ttggatagcg      3960
     tcgtcttcgt cgtcctggaa agtatttgtg tcaaaccgaa tcgccgaaat tcatcgactg      4020
     accagtggaa gtatgtggcg tcacatcccg acagaattaa acccagctga caaaatatcg      4080
     agaggagtat ctccgtctca cctgaaagga gattctcttt ggtggtatgg accaccgttt      4140
     ctacggcaaa actcggattc ttggccagag aattgtatca aattaacacc actacattca      4200
     gaagctcgaa gatcggaatc gcgacaaatt gtatcggtcg tagtgtctac taattgcagt      4260
     tcaattgagt ttatcgaaca acattcaacg ctctcccatc tacaacgcaa ggtcgcttgg      4320
     atcctgcgat tctccaacaa ttgtcgtact cagttcctgc gaaaccgaag atttggcccc      4380
     ctgtcgcata ctgaactgga caatgcactc atgcatctta ttaaacaaac acaattggtc      4440
     tatttttcgg cagaaatcga attcttgaag aaacacaatg gtcgtgttca caaggcattt      4500
     gcattcaagt caccattaaa aactctttgt ccatttttag attccgatga tttgctgcga      4560
     atcactggcc gccttcagca tctcaatgtg ccatacgaca ccaagcatcc attgatatta      4620
     cctcaaaagg cccacctaac actactaata gtgagatcga tacaccgatc gatgctacat      4680
     gctggaccac aactgctctt gtcgacgttg cgtcaacggt attggccagt aagaggccga      4740
     gatcttgcga aaaaagttgt tcgagagtgc ataacctgtt ttcgctgtcg tccccacagc      4800
     atctgccaaa tcatgggccc actgccagca gctcgagtca cgccgtcgcg cgcgttcacc      4860
     cactgtggcg tcgattattg tgggccgttc tccgtctcaa ttccgaatcg ccgcggtccg      4920
     tcggtcaagg tacacgtcgc aatattcgtg tgtatgtcgt caaaagcagt gcacatcgac      4980
     atggtgtaca atctaacgtc cgactcgttc atcaacatac ttaaacgcct cgtcgggcgc      5040
     cgtggtcgcg tatccgacat atactgcgac aacgcacgaa cgttcgtggg agcaaaccgt      5100
     atactcgaag agaatcggaa acaattcgac gcgatgcacc aatcgcaagg attgcacact      5160
     ttctgtgctg aaactggaat aaacttccat ttcaatccgg cacgttcacc ccactgcgga      5220
     ggtctttggg aagcctccgt gaaaactttt aagtaccacc tctatcgtgt catgaaggac      5280
     accgtaatca acacggacga cttcagcact ctgatcatcc aaattgaagg aataatgaac      5340
     tctcgtccac tgtgcccatt atcttcggac ccagcagacg tagttgccct cactccagga      5400
     cacttactcg tgggagaacc tcttttctct ctccctgaac cagatctatc gaacctccca      5460
     atgaatcgtc tcaattcgtt ccagagaatg caacgaggtc tccaacattt ctggaaagcc      5520
     tggtcacgag attacgttgc ccaattacag gatcgcaaga gatggccaac agttcatccg      5580
     gacatcaaga ttggagtgtt ggtgcttctc aaagacgata acgctccacc aatgcactgg      5640
     aatctcggtc gtatcgaaca agtgtttcct ggcaaggatg ggcatattcg tgtagttcag      5700
     gtccgaactg ctcacgatca ctatcgtcgg gctatcaccg agatctgtcc tctacccatt      5760
     gaggacccgt catgtcaaca acccaccacc cattgagcta ggaagacgct tggtgattag      5820
     ttgaaagtgg cctttcaacg tggcccgtca                                       5850
//
ID   BEL-734_AA-LTR repbase;    DNA;    INV; 532 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-734_AA-I;
KW   BEL-734_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-532
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-532
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 589-589 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 532 BP; 127 A; 111 C; 119 G; 175 T; 0 other;
     tgttagcact agaatgtaaa tttcacttta acaaattttg ttatgtagta ttttgagccc        60
     tatgttgaat tgtaactcaa atattcagga tctcatttat gccgagccaa ttatacaaac       120
     atgcaatgca ctcaaaacct ctacatgtac cactctccga tcggtatcgt gccgatcgtg       180
     taatcgcgcg aattcagtta ggtattgtag gggaaaagat tggctctata gtttagtctt       240
     gatctacagt cgatcaaata aagttcgata cgaggaggta tctttgtaaa atccaaatca       300
     gtttttagtt attacgctaa gtgcggaaga aactctctac aagtgcttcg aaaccaaagt       360
     taacgcgttg ctcgatattg ccgcccggtg tccccccccc cttgtttgct ctgttggagt       420
     ttgggcgttc gctgtgatcc ggtgtgctgg ttcaagctgt tgctgttgtt cctgctgttg       480
     gctgctggat attgctgttg ctgttcgacg acgttcgcca ggtttggcta ca               532
//
ID   BEL-735_AA-I repbase;    DNA;    INV; 5571 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-735_;
KW   BEL-735_AA-I; BEL-735_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5571
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5571
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 615-615 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..5549
FT                 /product="BEL-735_AA-I_1p"
FT                 /translation="MPSTRTPKGAKKSAGSEYTPINQQIAEQNKKKEERRI
FT                 HIEEEYEVLVRQRGAVKSKLLREQRSLLDTADNPNPNLKNIHFLQLHLKNV
FT                 ECCSCEFNELQKVLYALPLSDETRDEQEEEIVVFETAYNDLVIRLNSLIES
FT                 IVKEESRSAVPTASSQPTVASHGHLPPLKVPLPQFDGSYENWLSFKCMFQS
FT                 IMGRYTDESPAIKLYHLRNSLTGKAAGIIDQDIINNNDYDAAWEMLTERFE
FT                 DLRLIIDRHIEALNKMPKITKESAVELRKLVDNCSKNVDALKNLDLPVEGL
FT                 GEAMLVNLISSKMDNETRKVWETNQVPGELPEYGATMSFLKERCKILEKIN
FT                 MNTKTSVDIAKPPRSVGRSNTLATTVGLKCSVCXSEHELWRCDDFKKNSVS
FT                 EKYDILRKSGSCYNCLQRGHRTVDCPSSSSCKKCGKRHHTFLHHEDRKTVT
FT                 AKTSEGEAKTGSGVDETQMQSTPSVAHPIETNRVESSSTLCTRDEVAKNHC
FT                 LLSTAVVTAYGSTGLPFPCRVLLDCASQSNFVTEQFSDCLALRKEPVDYLV
FT                 SGLDGKSTKIRFKIQLKIASRINNYSTVLDCLVTPKIISDLPMRNLDVRNW
FT                 PLPTEIDLADPSFFKKNRIDVLIGADIFWDLLKPNRMKLAPELPTVTETEL
FT                 GWIVGGNATTAAKQHQPTLCTMVENENLCDLLNRFWEIEGLADNXRSTTMT
FT                 DEDCLNHFRSTFQRDEAGRFYVRLPFNEREADLGESKTMAIKRFLNLERKL
FT                 DKDPLLKQQYADFIIEYQRLGHMLEIDTTTDEDGAFYLPHHCVIKPSSTTT
FT                 KLRVVFDGSAKSSSGISINDALIPGPIVQNDLVAILLNFRCFRYVVTLDVP
FT                 KMFRQIGVQSADRKYQRIVWRDSSDQPLKNFELQTVTYGLASSPFLATMAL
FT                 KQLAIDHSEEYPLAAAAIEKCFYMDDALTGAQTLEEACKLQQELVQLLRRG
FT                 CFDAHKWCSNSDVILEDVPDELKGDGVNVSDIDSKAIVKTLGVAWSPKEDW
FT                 FSFCVPSNNSNPEHPLTRRKVLSEVARIFDPLGLIGPVLTTAKLFLREIAD
FT                 TTTDWDAPLPQAFVNRWKLFREGLVTMNRLKIPRWILSATAISTELHGFAD
FT                 SSKQAYGACLYTRILQSDGTFVMKLICSKSRILPKSSNRSKPITTPRSELL
FT                 AAVLLARLADKFLSSTETKFAAVYLWSDSQIVLSWLRKSPGELQLFVSNRV
FT                 KEIQNLTKDYQWNHVDTHSNPADIISRGEQPEALFRKQLWWNGPSTMPNVS
FT                 NLGTVPTLPDEMLPELKNPVTLAITTNARMKIFDDVSDFGKLQRHMAYLIR
FT                 FAFYVASKKKTVIKGPLQAGELTRALKVIVRLVQAEAFANEIAAVKRGENE
FT                 KHRLKTLYPFLDDEDAILRVGGRIKHAFIPFDSRHQMLLPAKHPVTERLVR
FT                 HLHIENLHLGQRALLAVVRQRFWPLNVKSTIRKVIHSCTTCFRADPNKTTQ
FT                 LMGNLPSYRVQPAPAFTRTGIDFAGPFSIKSTTEARRPMITKGYVCLFVCM
FT                 STRAIHVELVSNLSSEAFLAALRRFVSRRGLTSTIFSDNATNFVGADGELE
FT                 ELRRLFECEQHQKQLNQFCSSKGIEWRFIPPRSPHFGGMWEAGVKSIKHHL
FT                 KRIVGTRRLTFEELYTTLTQIEAVLNSRPLTQASDDPSDLTAITPAHFLIG
FT                 RPMQTITEPSYLHLKESTLSRWQLVQSMQQQFWKRWTTEYLPELQNRQKWH
FT                 RLTKIKPGALVLLADKNAPPAQWLLGRIVALHAGKDNVTRVVTVKTNRGEF
FT                 KRAVAEICILPLDDEQHQDRKEVLEP"
XX
SQ   Sequence 5571 BP; 1604 A; 1234 C; 1353 G; 1377 T; 3 other;
     tttggtcctt catcaccgga tgaagcagtg aaacgaacaa ttttaagaaa agccgtgaat        60
     ttgatgaaaa tagtgaacat ttggtcgtac cgacggccga atgtagcgag gcaggcagcc       120
     attgttctag tctctcgctc gatctttcgt cgaacacaat gccttcaaca agaacaccga       180
     aaggagcgaa gaaatcagca ggaagcgaat acacaccgat aaatcaacaa atcgccgaac       240
     aaaacaagaa aaaagaagaa agaagaatcc atattgaaga agaatatgaa gtgctagtgc       300
     gtcagagagg ggcagtgaag tcaaaacttt tacgagagca gagatcctta ttggacactg       360
     ccgacaatcc gaaccctaac ctcaaaaaca ttcacttctt gcaacttcat ttgaagaatg       420
     tcgaatgttg ctcttgcgag ttcaacgagt tacaaaaagt gttgtatgca ctgcctcttt       480
     ctgacgaaac ccgagatgaa caagaagaag aaatcgtggt tttcgaaacg gcctataatg       540
     atctcgtcat aaggctgaat tcattaatcg aatccatcgt caaggaggaa tctcgttctg       600
     ctgtacccac cgcttcttcg cagcctaccg ttgcctctca cggccacttg ccgccgttga       660
     aagttccatt gccgcaattc gatggctctt atgagaattg gctatcgttt aaatgcatgt       720
     tccaatcaat aatggggcga tacaccgacg aatcaccggc aataaagcta taccaccttc       780
     ggaattcttt gacgggaaag gcggcaggca tcatagacca agacatcatt aataacaatg       840
     attatgatgc tgcttgggag atgctaaccg aacgttttga agatctacgt ctcatcattg       900
     atcggcacat cgaagcgctg aacaaaatgc cgaagattac gaaagaaagt gctgttgagt       960
     tgcgaaaact ggtagacaac tgttcgaaga atgtggatgc gttgaagaat ttggacctcc      1020
     ctgtcgaagg gctgggcgaa gcgatgctgg tcaatttgat ttcatcgaag atggacaacg      1080
     aaacacggaa agtttgggaa accaatcaag tgcctggtga acttcccgag tacggagcaa      1140
     ccatgagctt cttgaaggag cgctgtaaga ttctagagaa gatcaacatg aacacgaaaa      1200
     ccagtgtgga cattgcgaaa ccaccccgtt cggtgggaag gagcaatacg ctcgctacaa      1260
     ccgttggact gaagtgctca gtgtgcmaaa gtgaacatga actgtggaga tgtgatgact      1320
     ttaaaaagaa cagtgtaagt gaaaagtatg acattctgcg aaaaagtggt tcgtgctata      1380
     attgccttca aagaggacat cgtaccgtcg actgcccatc gtccagttcc tgcaaaaagt      1440
     gtggcaaacg acaccatact ttcttgcatc atgaggatcg aaaaacggtg acagcaaaga      1500
     cgtcggaggg tgaagcaaag accggaagcg gggtcgacga aacacagatg caatccactc      1560
     catctgttgc tcatccaatc gaaactaatc gtgtggagtc atcttcgacg ctgtgtaccc      1620
     gcgatgaagt tgcgaaaaac cattgcttac tatcgactgc cgttgttacc gcttacggaa      1680
     gtacagggtt gccgttccca tgcagggttc tcctggattg tgcatcacag tccaatttcg      1740
     tcacggaaca gttttccgat tgtttggctc tgcggaagga acctgttgat tacctcgtca      1800
     gtggcctcga tgggaagagt acgaaaataa ggttcaaaat ccagttgaag attgcgtctc      1860
     gaatcaacaa ctacagcact gtactcgact gtctcgttac tccaaaaatc atcagtgacc      1920
     tcccgatgcg aaatttggac gtgcgcaatt ggccgcttcc cactgaaatt gatctggccg      1980
     acccatcctt tttcaagaaa aatcgtattg acgttttgat tggtgcagac attttctggg      2040
     atttgttgaa gccgaatcgc atgaagctgg cgccggagct accgacagtg acagaaactg      2100
     aacttggatg gattgttggc ggkaacgcta caaccgcagc gaagcaacat caacccacat      2160
     tatgcacgat ggtcgagaat gaaaatctgt gtgatttgct caacaggttc tgggaaatag      2220
     aaggacttgc cgataatcma agaagcacca cgatgacgga tgaagattgc ctcaatcatt      2280
     tccgcagtac attccagcga gacgaggcgg gtcgcttcta tgttcggctc ccgttcaatg      2340
     agcgtgaggc tgacttaggc gaatcgaaga cgatggcaat caaacgtttt ttgaacttgg      2400
     aacgcaagtt ggataaagac ccgctattga agcagcaata tgcggatttt atcatcgaat      2460
     atcagcggtt gggccatatg ctggaaatcg atacaacgac tgatgaagac ggtgcctttt      2520
     atctacccca ccactgcgtc atcaagccgt cgagtaccac caccaagtta agagttgtgt      2580
     ttgacgggtc ggccaagtca tctagtggca tctccatcaa cgatgctttg attccaggac      2640
     ccattgtgca gaatgatctg gtggcgatac tgctgaactt tcgctgcttc cgctatgtcg      2700
     ttaccttgga tgtgccgaaa atgtttcgtc agatcggtgt acagtcggca gacagaaagt      2760
     accaacgaat tgtttggcga gattcttccg atcagccatt gaagaatttt gaactgcaaa      2820
     ctgtaacata tggactagca tcgtcaccgt tcttggctac aatggcgcta aaacagctag      2880
     ccatcgacca ttctgaagag tatccactcg cagctgcagc aattgaaaag tgcttctata      2940
     tggacgacgc cctcactgga gcgcagacat tggaggaggc ttgtaagctt caacaagagc      3000
     tggtgcaact attgcgacgt gggtgcttcg atgcccacaa atggtgttca aattcggatg      3060
     ttatcctcga ggatgttcca gatgaactga aaggagatgg tgtgaatgtt tccgacatcg      3120
     attcgaaagc gatagtgaag acgctaggag ttgcttggag tccgaaagaa gattggtttt      3180
     cgttttgcgt gccttcgaat aattcgaatc cagaacatcc attgacacgt cgtaaggttt      3240
     tgagtgaagt tgcacgaatc tttgacccat tgggattaat cggtcctgta ttgacgactg      3300
     ccaagctgtt tcttcgagag attgcagaca ccacgacaga ttgggatgcc ccattaccac      3360
     aggcatttgt aaatcgttgg aaattgtttc gtgaaggact agtgacgatg aaccgtttga      3420
     aaattccacg atggatccta tcagcaaccg ccattagtac tgaacttcac ggcttcgcgg      3480
     attcttcaaa acaagcatac ggagcctgct tgtatactcg aatactgcaa tcggatggta      3540
     cgttcgtcat gaagcttata tgtagcaaat cccgaattct cccaaaatca tcaaaccgct      3600
     cgaaaccgat cacgacgcca cgatcagaat tattggctgc ggtgctactc gctcgcttgg      3660
     cagacaaatt tttatcctca actgaaacaa aatttgctgc tgtgtatttg tggagtgact      3720
     cacaaatagt attgagttgg cttcgaaaat cacccgggga gttacagctc ttcgtgtcca      3780
     accgcgtgaa agaaatacag aatttgacga aagactacca atggaatcac gtcgatacgc      3840
     actcgaatcc agccgatatt atctcgagag gtgagcagcc tgaagctttg tttcggaaac      3900
     aactctggtg gaacggtccc agcacaatgc ccaacgtgtc caatcttgga actgtcccaa      3960
     cgctcccgga tgaaatgctg cctgagctga agaatccagt gacacttgct atcaccacca      4020
     atgcgcggat gaagatattt gatgacgtta gtgatttcgg taagctacag cggcacatgg      4080
     cctacttgat acggtttgcg ttttatgttg cttcgaaaaa gaaaacagtg ataaaaggac      4140
     ctctccaagc cggggagctg actcgagcgt tgaaggtaat tgttcggctg gtgcaagccg      4200
     aagcttttgc gaacgaaatt gcagctgtga aacgaggtga gaacgagaag caccgattga      4260
     aaactttgta tccattcctt gacgacgagg acgcaatcct tcgagtaggt gggcgtatca      4320
     agcatgcgtt cattccgttc gatagccgtc atcagatgtt actgcccgcc aagcatccag      4380
     tcaccgaaag gttggttcga catctgcaca tcgaaaattt gcatttaggt caacgggcac      4440
     ttctggcggt agtcagacaa cgtttctggc cactaaatgt aaagtcaact atcaggaagg      4500
     taattcattc ttgcactaca tgcttccgtg cggacccaaa caaaacgact cagttgatgg      4560
     gtaatttacc gtcatatcgt gtgcaaccag cgccagcttt cactcgaact gggattgatt      4620
     ttgctggtcc attttcaatc aaatcaacaa cagaagcaag acgaccgatg ataacgaaag      4680
     gatatgtttg cctctttgtg tgcatgagca caagggctat acatgttgag ttggtgtcca      4740
     acctttcttc ggaggcgttt ttagcagcgt tgagacgatt tgtaagccga cgaggattga      4800
     cttctacgat tttttcggac aatgcaacaa attttgtggg tgcggatggc gaattagaag      4860
     agttacgacg acttttcgaa tgcgagcaac accaaaagca actgaatcag ttctgcagca      4920
     gtaagggcat cgaatggcgt ttcattcccc ctcggagtcc acattttggt ggaatgtggg      4980
     aagcgggggt taagtcgatc aagcatcatc tgaaacggat cgtcggaact cgtcgtttaa      5040
     cctttgagga actgtataca acattaactc aaattgaagc ggtcttaaat tcgcggccgt      5100
     tgacgcaggc ttcagatgat ccaagcgatt tgactgctat tacgccagca cattttttaa      5160
     ttggaagacc aatgcaaact attaccgagc catcatacct tcatctcaag gagtcaactc      5220
     tatcaagatg gcagctagtt caaagtatgc aacagcagtt ctggaaaagg tggaccactg      5280
     aatatttacc agaattgcaa aatcgtcaga agtggcatcg tctaaccaaa atcaaacctg      5340
     gagccttggt gttgctggca gataaaaatg ctccgccggc gcagtggttg ttaggacgta      5400
     tcgttgcatt acacgctgga aaggataatg tcactagagt ggttacggtc aagactaaca      5460
     ggggtgaatt taagagagcc gtggctgaaa tctgtattct acctttggat gatgaacaac      5520
     atcaggacag gaaggaagta ttggaaccct agattccaac gccggggaga a               5571
//
ID   BEL-735_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-735_AA-I;
KW   BEL-735_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-220
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 568-568 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 220 BP; 67 A; 38 C; 37 G; 78 T; 0 other;
     tgttgagtgt aatattttaa agaaaccaga ctacatcaat ttggattacc catgttttat        60
     tttttatttt gcttttccgt ttccgctata tgcgactgta gaagctttgt cttgtcaata       120
     aatgaaagtc gaacagaaca caactgttct ttctgtgcgc gagaaattat tccgaatttg       180
     cgataagaaa aatacagtcc actgatcgat atgatctaca                             220
//
ID   BEL-736_AA-I repbase;    DNA;    INV; 6324 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-736_;
KW   BEL-736_AA-I; BEL-736_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6324
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6324
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 616-616 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..6322
FT                 /product="BEL-736_AA-I_1p"
FT                 /translation="MPLTRNARNKPAAGSAGVAANLNASCDASAGIEEDNI
FT                 RTEDAISMPSGTTEQDGETPSRKTAVGEINAPQLSGTIPKPPRKSPSPGVS
FT                 EMINKLNTANLNVDHIQLRRSKRHYHCSLCDERDNSRMVQCDSCDSWYHFT
FT                 CAKVTETVAEVDWSCPFCGVSNRTNTLHLGVVPSSNQGNDNRHPMVQQQQQ
FT                 DSKGQAQPGPVDDIASVRSVSTRSKASSNRSRTRRAMELQLLKLEEDRALQ
FT                 QRYLDRKFAILQAYDSDGEEDEVGSIVDKVSQVEDWIQRTDNIGKTVPGLT
FT                 FRETTGQPPSNSQSVEHAARGHMSQPAIVYQTKTYPAPNNVQHPPNHRGFS
FT                 TRNQSNQYHGILNSHPTLSQPNLLSQRATLSGVADFVPRQRSTPNAPRHRF
FT                 QNVNQEVDFVENGGAPEFPPTVMTAQPPNYSQPVEYTAHGQEHQATVCLLN
FT                 QSQLAARHAVPKDLPEFSGRADDWPLFLAMFNSSTQMCGFSNEENMLRLRK
FT                 CLKGEALNRVRCELLHPNNVPSVISTLKMLYGKPEAIIQAVIQKVRDLPAP
FT                 RIEKLETLVDFALCVKNLCATIQACEIDDYLYSSSLRYELVERLPPALKME
FT                 WAKATRGNPVPTLLQFSTWLYVMAEDASMVMGVHSTVQKSDSRTRGRKENL
FT                 LNVHIESDDGQTSIPLKDKKDSLQLCCVCKSDCSSLAKCTRFLEFSYDSRW
FT                 ATIRELKLCRKCLRRHNSSCNQRKPCGVNGCTYLHHPLLHSVKQVEPEKVA
FT                 AAPNPRASIEDALEGNVNVHQEKTSDVLFRFVPVVLYGPSKEVHTFAFIDD
FT                 GSEMTLLEQGLANELGVSGQTTPLCLKWTGGTKRVECNSQRVNLHISGTTN
FT                 HSNKFAMSNVRTVDRLELRPQTMIIEDLQKQFRHLYGLPIESYRDIAPRIL
FT                 IGVDHATLGQVKKSREGKPKQPIAVKTVLGWCVYGCMAASSSRDSIVNHHV
FT                 LDICSCNNENGDHLHNAMKEYFSLDSMGIVQPGKLFMSKEDERSQLLLDTL
FT                 TRRKGDRYETGLLWRYEGVRLPNSRSMALKRWECLERRMQNDPVLGEALDM
FT                 KITDYICKGYIRKMTEAELAIEHPRVWYLPVFPVMNPNKPTKTRLVWDASA
FT                 KAHDVSLNSVLLKGPDYLTSLLSVLIQFREHRIAVCGDLREMYHQVLIREE
FT                 DQHCQRFFWGHKENSAEPNVYIMQVMTFGACCSPSAAQYVKNKHAKLYDKT
FT                 RPAAVRAIIEHHYVDDMLVSVETEEEAVSIAQDVKWIHEKAGFEMRNWLSN
FT                 SPAVLAQLEEHQVMEKDLNVSDGIVTEKILGMWWNTEKDYFTFKLSTRCEE
FT                 ELLSGQRRPTKRETLRMLMLMYDPCGFIAHFLMYLKVLLQEIWRSGISWND
FT                 KIEDKEFEKWLLWIKVLSKVQDVEIKRCFRDQTSVDADIQLHTFVDASENG
FT                 FAAVVYLRFREESRIECALVAAKTRVAPLRFLSIPRAELQAAILGVRLANT
FT                 VQRSLNIKVSQRFFHTDSRDVCCWLNSDHRRYSQYVAFRVSEIIESTEVSE
FT                 WHWISTRQNVADLGTKWKGLPDLSPQSIWFRGPSFLWEPEEEWPTTSRRYG
FT                 TTDEELRPNVLVHLNTPKPLFSPDQFSSWTTLVQRTAMFARQALNWRRRAR
FT                 KEKPVNGPLTREELVYAENYLYRTAQGDIFADEVAILKTNMISETKKRIPK
FT                 SSTIYRVCPILDEANVLRVQGRTGACKYIDVDAINPIILPREHTITKLVVA
FT                 HFHRRFHHQNHETVANELRQHYYIPRLKAVYRKVRKDCQQCKNNDAVPSPP
FT                 LMADLPLARLDAYTRPFTHTGVDYFGPITVSIGRRTEKRWGVIATCLTTRA
FT                 IHLQVAYSLSTDSCIMALRNIFNRRGTPAVIYSDRGTNFQGATKVLEEAVR
FT                 NIDQNRVVAEFTSKHTEWRFNPPASPHMGGAWERLIRSVKQNLSKVMASRT
FT                 VTPEVLENALNEVENIVNSRPLTAIPVDDDLSPVLTPNHFLLQSSNGMKPF
FT                 VAFDDTFRALKNNYEVSQILANCFWQQWLRDYLPTITRRSKWFTATKPIEV
FT                 NDIVIVVDPRLPRNCWPKGRVIATKISSDGQVRSATVQTTSGGIYERPAIN
FT                 IAVLDVGVEGNTFRTSPSRITGG"
XX
SQ   Sequence 6324 BP; 1880 A; 1437 C; 1518 G; 1489 T; 0 other;
     tttataaaat actttatcaa agatgccgct aacaaggaat gcacgtaaca aaccagctgc        60
     cggtagcgct ggtgtagccg ccaatctgaa tgcttcctgt gatgcttccg ctggtattga       120
     agaggacaat attcgtacag aagatgcaat ctccatgccc tctggtacaa cggaacagga       180
     cggcgagaca cccagccgta aaaccgctgt tggagagatt aacgcccccc agttgagtgg       240
     aacaattccg aaaccaccta gaaagtcccc aagtccaggt gtctcagaaa tgataaacaa       300
     attaaacact gcgaatctga acgtcgacca cattcagcta cgtcggtcaa aacggcatta       360
     tcactgttcg ctttgtgacg aacgggacaa cagtagaatg gtccagtgtg attcatgcga       420
     tagctggtac catttcacat gcgcaaaggt gactgaaacg gtagcggaag tggattggag       480
     ttgtccgttt tgtggagtta gtaaccgcac caacactctt catctaggag tcgttccgtc       540
     ctcgaatcaa ggaaacgata atcggcatcc aatggttcag cagcagcaac aagattcaaa       600
     aggtcaagca cagcctggtc ctgtcgatga cattgcatca gtgagatcag taagcactcg       660
     ttccaaagca tcgtccaaca gaagccggac gagaagagcg atggagctgc agctactcaa       720
     gctagaagaa gacagggctt tgcagcaacg atatttagat cgtaaatttg ccatattaca       780
     agcgtatgac agtgacggag aggaagatga ggttggatca atcgtcgaca aagtttcaca       840
     agtggaggac tggattcagc gcaccgataa cattggtaaa accgtgcctg gtttaacatt       900
     cagagagacc actggacagc cgccgagtaa ctcgcagtct gtggagcacg ccgctcgagg       960
     tcacatgagt caacctgcta tcgtttacca gacaaagaca tatccagctc caaataacgt      1020
     tcaacatcca ccaaatcaca gaggattttc aacacgaaac cagtccaatc aatatcacgg      1080
     cattctgaat tctcatccaa cactgtcgca gccaaattta ctcagccaaa gagctacttt      1140
     gagtggcgta gctgatttcg ttccaagaca gcgctctaca cctaacgctc cacgacaccg      1200
     atttcaaaac gtgaatcaag aagttgattt tgttgaaaat ggaggcgcac ccgagtttcc      1260
     gcctacagta atgactgccc aaccgccaaa ttattcacag cctgtagaat acaccgctca      1320
     tggtcaagaa catcaagcga cagtatgttt gttgaatcag agtcagctgg ccgcacgtca      1380
     tgcagtacca aaagacctcc cggaattcag tggtcgtgca gatgactggc cattgtttct      1440
     agctatgttt aactcttcaa cacaaatgtg tggtttctct aacgaagaga atatgcttag      1500
     gctgcgcaaa tgtttaaaag gcgaagcgct aaatcgggta agatgtgaat tgttacaccc      1560
     gaacaatgta ccgagtgtca tctccacact taaaatgctg tatggaaagc ctgaagcgat      1620
     tattcaagcg gtaatacaaa aggtgagaga cttaccagcc cctaggatcg aaaagttaga      1680
     gacgctagtt gattttgctc tatgcgtgaa aaacctatgc gccacaatcc aagcatgcga      1740
     aatagatgac tatctataca gctcttcgtt gcggtacgaa ttggtggaaa gattgccccc      1800
     ggcgctgaag atggaatggg caaaggcaac tcgaggcaat cctgttccca ctttactgca      1860
     attcagcacc tggctgtacg tgatggcgga agatgcaagc atggtgatgg gagttcacag      1920
     caccgttcaa aagagcgact ccagaactcg gggcaggaaa gaaaatttgc taaacgttca      1980
     cattgaatcc gacgatggac aaacgagcat ccccctcaag gataaaaagg actctttgca      2040
     gctttgttgc gtctgtaaga gcgattgttc ttccttagct aaatgcacgc gattcttgga      2100
     gttcagttac gattctagat gggccacgat aagagagtta aaactgtgtc gcaaatgtct      2160
     tcggcggcat aacagttcct gcaatcagag gaaaccatgt ggagttaacg gatgtactta      2220
     cttgcatcat cctcttctgc atagcgtcaa acaggttgaa ccagaaaaag tagctgctgc      2280
     tccaaatcct cgagcgtcta tcgaagatgc attagaaggc aatgtaaacg tccatcaaga      2340
     gaaaaccagt gatgtattat tccgatttgt tcctgtcgtt ttgtacgggc cgtctaaaga      2400
     agtgcataca tttgcgttta ttgacgatgg ttcggagatg acactgttag aacaaggcct      2460
     cgctaacgaa ttaggagtat ctgggcagac cacaccccta tgcctaaaat ggacaggtgg      2520
     cacgaagcga gtcgaatgca attctcaaag ggtcaatttg cacatatctg gaacaacgaa      2580
     ccactcgaac aaattcgcta tgtcaaacgt tcgaacagtg gacagattgg aactacgacc      2640
     acagaccatg atcatcgaag acctgcaaaa acaattccgt catctgtatg ggctgccaat      2700
     tgaatcatat cgcgatattg ctccgcgaat cctcatcggt gtcgaccatg ccacactcgg      2760
     gcaggtaaag aagagtcgag agggtaagcc caaacagccg atcgctgtga agacggttct      2820
     aggatggtgt gtttatgggt gcatggcagc aagttcgtcc agggatagca tcgtaaacca      2880
     tcacgtacta gatatatgtt cctgtaataa tgaaaatggg gaccatctgc ataacgccat      2940
     gaaggaatac ttctcgctgg acagtatggg tatagtgcaa ccaggaaaat tgttcatgtc      3000
     caaagaagat gagaggtcgc agctgttgct tgacacactg actcggcgga aaggagatcg      3060
     atacgaaact ggtcttctct ggagatatga aggagtgcgg cttcctaata gcagatctat      3120
     ggctttgaaa cgctgggagt gcttagaacg tcgaatgcag aacgatccgg tattgggaga      3180
     agcattggac atgaagataa cggattatat atgcaaagga tatattcgga aaatgactga      3240
     agctgagctc gcgattgaac atcctagggt ttggtacctc ccagtttttc ctgtcatgaa      3300
     cccaaacaag cctacaaaaa caagactagt ctgggatgcc tcggcgaagg ctcacgatgt      3360
     ttcgcttaac tccgtacttc tcaaaggtcc tgactatctc acgtctctat taagtgtgct      3420
     aattcaattc agagaacatc ggatcgcagt gtgtggggac ctaagagaaa tgtaccacca      3480
     agtactcata agagaggagg atcaacattg tcaacggttt ttctggggac acaaggaaaa      3540
     ctctgctgag ccaaacgtct acataatgca ggtaatgacg tttggtgcct gctgttcgcc      3600
     cagtgcggcc caatacgtca aaaacaagca cgctaaactg tacgacaaaa cacgaccggc      3660
     tgctgttcgg gcaataatcg agcatcatta tgtcgatgat atgcttgtta gtgtagagac      3720
     agaggaagaa gcagtttcta tagcacaaga tgtaaaatgg attcacgaaa aggccgggtt      3780
     tgagatgaga aactggttgt ccaattctcc agcagtgttg gcccaattgg aagaacacca      3840
     agtgatggag aaagatctga acgtcagcga cggtatagta actgaaaaaa tcttagggat      3900
     gtggtggaat acggaaaagg actactttac tttcaaactg tccaccagat gtgaggaaga      3960
     actgctatct ggacaacgta gaccgaccaa gcgagaaact ctgcgaatgt tgatgctgat      4020
     gtacgatccc tgtgggttta ttgcccactt tctgatgtac ctaaaggtgc tccttcagga      4080
     aatctggcga tcaggaatta gctggaatga taaaattgaa gataaagagt tcgaaaagtg      4140
     gttgctttgg attaaagttc tatctaaagt gcaagacgtt gaaataaaac gttgctttag      4200
     agaccaaaca tccgttgacg ctgacatcca actacatacg ttcgtagacg ctagcgaaaa      4260
     tggatttgca gccgtggtct accttagatt ccgagaggaa tctagaatcg aatgcgctct      4320
     tgttgctgca aaaactaggg tggctccctt gcgattccta tcaatccctc gggctgaact      4380
     ccaagccgct attcttggag tacggcttgc gaacactgtt cagcgatcgc ttaacatcaa      4440
     ggtgagtcaa cgattctttc acactgactc tagagatgtg tgttgttggt taaattcgga      4500
     tcacagaagg tatagccaat atgttgcctt ccgggtcagc gaaatcattg aaagcaccga      4560
     agtttccgaa tggcattgga tatcaactag acaaaatgtt gccgatttgg gcacaaaatg      4620
     gaaaggattg ccggacctaa gcccacagag tatctggttt cgtgggccgt cgttcttgtg      4680
     ggaacccgaa gaagagtggc cgacgacatc gcgacgatac ggaaccactg atgaagagct      4740
     ccggcctaat gtactggtgc atttgaatac acccaaacca ctgttctctc cggatcaatt      4800
     ttcaagttgg acaacgctgg tgcaacgaac ggcgatgttt gccagacaag cattgaactg      4860
     gagacgaaga gcgagaaagg aaaaaccggt aaatggaccc ctgactcgtg aggaactcgt      4920
     gtatgctgaa aactatctgt atcgtactgc tcaaggagac atatttgcag atgaagtggc      4980
     tatcttgaag acaaacatga tctcagaaac gaagaagcgg attccgaaaa gcagtactat      5040
     ataccgtgta tgccctattt tggacgaagc gaatgttctc cgcgttcaag gtcgaacagg      5100
     tgcatgcaag tacatcgatg tggacgctat taatccaata attcttcctc gagaacacac      5160
     cattacgaag cttgtagtgg cacattttca tcgaaggttt catcatcaaa atcatgaaac      5220
     tgttgcaaac gaacttcgtc aacattacta catccctcgt ttaaaagcag tataccgaaa      5280
     ggtgcgtaaa gattgtcaac agtgcaagaa caacgatgca gtaccttctc ctccattgat      5340
     ggctgaccta ccgttggcac gtctagacgc ctacacacga ccattcactc acaccggcgt      5400
     ggactatttt gggccaatca cagtatccat cggtcgtcgc acggagaagc gatggggagt      5460
     cattgccaca tgccttacga cacgagcgat ccatctacag gttgcctatt cactgtctac      5520
     agactcttgt attatggctt tgcgaaacat ctttaaccga aggggaactc cagctgtaat      5580
     ctacagtgat cgtgggacca actttcaagg cgctacaaag gtacttgagg aagcagtccg      5640
     aaacatcgat caaaataggg tggttgctga attcacctcc aagcacacgg aatggagatt      5700
     caaccctccc gcgtctcctc acatgggggg agcgtgggag cgtctcatca gaagcgtgaa      5760
     gcaaaatttg agcaaagtta tggcatcaag gacggtgact cccgaggtgc tggaaaacgc      5820
     actcaacgaa gtagagaata tagtcaactc gcgaccgctg acagccattc ctgtagatga      5880
     cgacctttct ccagtactca caccaaatca ttttcttctc cagtcatcca acggaatgaa      5940
     gccatttgtc gcattcgatg ataccttccg cgccctgaag aacaactacg aagtctcgca      6000
     gattttggct aactgctttt ggcaacaatg gttgcgtgat tatttgccaa caatcactag      6060
     acgatccaaa tggttcaccg caacgaaacc catcgaagtc aacgatatcg taattgtagt      6120
     tgatccaaga ctcccacgca actgttggcc caagggaaga gtcattgcaa cgaaaatttc      6180
     atcggatggg caggtacgtt cagcgacggt gcaaacaact agcggaggga tctacgagag      6240
     accagccatt aatatcgcgg tgctcgacgt tggcgtagaa ggaaatacgt ttcggacgtc      6300
     accttcacgg attacggggg ggaa                                             6324
//
ID   BEL-736_AA-LTR repbase;    DNA;    INV; 673 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-736_AA-I;
KW   BEL-736_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-673
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-673
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 569-569 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 673 BP; 228 A; 135 C; 115 G; 195 T; 0 other;
     tgtaagttgc gccacgtcga ccagcgaacc ccacgcttcc ccatcaacca tcactgatga        60
     caagtcgatc gatgattgcc gctcccacag cacacgcgga ggatcggctt gcaacgaaac       120
     atcaaaaaag ggcagtcata agtcacctaa gtcacctcaa aaacgatttt gagagaaatt       180
     gtttagacgt atcaccagaa ttagagttta tgccacgaca tttattcaat tagaattagt       240
     taaaaattga accttcattt aatacggtga gagtccaaca gaattatgcg attcagttca       300
     ctaatctagt gtggccttta ggctacttgt cttgctttac agatttctaa gaagagcgta       360
     aaaatcattg cactataaat ttgggaaact atgtggttag gtaaaataat gagtcacact       420
     cattcgatat gtgtaaataa tttacatgaa tgtaatcaac aggttcttta actgaatagc       480
     ccatccctac ccattataag ttgtgatcga cttgagtttg ctcgtgatta ctaaagtaag       540
     aaatctttaa cttaaaccta agattgataa aacattaact actttgtaat ttcacgcagg       600
     tattttataa tttacatcaa tacgaaccga ataaattcat gaaatcatca attacgagca       660
     ttgtcggcca aca                                                          673
//
ID   BEL-737_AA-I repbase;    DNA;    INV; 7399 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-737_;
KW   BEL-737_AA-I; BEL-737_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7399
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7399
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 585-585 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 7399 BP; 1966 A; 1834 C; 1757 G; 1841 T; 1 other;
     taattttggt ccttcgagcc ggatgtggcc aattgaccgg tggccaagtc actagtggcc        60
     aagaagttta gtgcggaaaa taccacgaac aatagaacgg acaatcagta ttggacattc       120
     gttaccgcca tcgcggattg tgtgctttgt gtgaagctga aaattgaaca gcctgcatcg       180
     aacggtgccc caagcgaaga aggttttgtg cgatcgccgt gcaccaggtt gaagcagaat       240
     cgatcggagg agcggattcc agatttcgac ggatcaacgg ccaaactgag cgacgcagag       300
     gaatctggat gagataggtt accaagggcc tggtcaaaag gaaagtagta ttgcatgtgt       360
     gcatgttggt ctgtggtgac atgagggtca ccaaccggtg atagatggga ttgatctgta       420
     ataaaaaatg gtgattgaga aggaatcagt tgtgatcctt ttatttgcat gcgatactcg       480
     atagctagtc cttgggtagg gttctccgat tgacggttgg tcttgatttc tgctggatga       540
     gttttggctg gttttctttc gcttggtcgg ttcccctcgc tgcagtcacc ctggtctgtg       600
     tcttttttca tacttggggc gttgagttga atcgcgagtc gcgttcatcg cgtgtacatt       660
     acggtcccaa tgagttgtgc agagacggag aagtttatga tagtgtgaga ttagtagttg       720
     gttgacctag caakcaatta caaagtgatt ttatgacaat taactctcta ttagtgaaag       780
     tgtttccatt tatttggcaa aatttagtga atgaagcgag tgaaaatgac gaatgagctg       840
     aaagatttga tgaagcagga acgccagctt cgaaataccg tcgaaggagt gcggaagttt       900
     ctcggcaaat acaaccctga gagacatcgt gatcaagtgg aagctaggct ggaaatgctt       960
     gaaggtgcta tgaagaaatt ctacatagtt cgtcggaaga ttgatgttct tttggaggag      1020
     gcggacgaaa cacgagtgtc cgaatccaaa gctactccag aggagaaggc tactctcatt      1080
     gaagagtcaa tcgaaatgcg ccaaaccgag agtgccgaat tgatagaagt ggtggaggat      1140
     actttctgtg aactgaaggc atcgttacaa aaattgatcc ctactcatga tgagtcagct      1200
     gcggtcagag agcaagcagt accccctgca gcaggtgctg tgtcgagagt aaagcttcct      1260
     gaaatctctc taccgaaatt tggaggtcgt attcgtgatt gggtcacata ccgtgacatg      1320
     ttcaaaagcc tgattcatgg gaacaacgtg ttgagtgcga tggacaagtt ttcgtatctt      1380
     cgttcgtctc tcgtcggtga agctctgcag gagatagcat cgatagacat aacagcagcc      1440
     aactactcga ttgcttggaa cagccttcag gagcgatacg aaaacaaaaa gctcatagtc      1500
     aaggcgcatc ttgaagcgtt gttcagcgtg gaaccgatga aacgggagaa ctacgagtcg      1560
     cttagtcaag ttatcagtga attcgaccga aatcttcagc agctagagaa gatcggcgaa      1620
     aatacggaag gatggagcac aattctggcc tatatggtgt gctgtagact tgatgctgtt      1680
     actcttcgac agtgggaatc ccaccatgct tcaaccgaag ttccagctta tgcggatttg      1740
     atggctttcc tacgcaaaca ggctatggtt ttgcagtcat tagcaccatc gaaaccaaac      1800
     caatcgattg atccaaagaa gcccaagttc acggttagtc acgctacgtc cgaatctcca      1860
     agaaattgtc cattctgtaa ggagagtcaa cattcggcct tcagatgtca gaagtttctg      1920
     aagatgagtg ttgcagagcg ctacgagaag gtaaagcgag ctggactgtg cctcaactgt      1980
     ttttcttcgt cacacctagt tcgattctgt acgagtggaa cttgccgaaa ttgtcatcaa      2040
     aagcatcatt cactgttgca catgggatcc accagcggtg gagctgcatc ctcgtcccaa      2100
     gcgaccggtt cctccgcccc acttgtacag aaccgaccac aaaaagcgaa cagtcaacac      2160
     acacagccac aaactcagaa tcagacctta ccctctcaaa cccctggaca accttcaaac      2220
     tcactagcaa tatctagtac gagttcgcag ccaccatttt cacacccgtc acacaccaca      2280
     caccgcacac aaattacgca aaccaattcc ttgcccatta atgtcccatc gccgacccga      2340
     caagtattac tttctacagc catgatagta gtaactgacc ggaacggcaa atcaaaaatc      2400
     gccagggctc tattagactc atgctccgag tactgtttcg caacttcaca attgtgtcag      2460
     aatctgaagc tgaatggatc gaacagtcat ctttcagttt ccggaattgg tggctccgtc      2520
     gtacgttcat ctaagatggt cgaagcagtt atatctccac ggttccagag catatcttcg      2580
     ttcaacgaaa ctgtgaagtt acacattctt cccaaactca ctgctacgtt gccagtcgaa      2640
     aatgttgcta tccaacaatt agcggttccc gaagacatcg ttttggcgga tcctggattc      2700
     tacgagcccg gcccaatcga tttgatcatt ggcgccgagt attatttcga tttgctgaga      2760
     gaaggtcgca agaagatgtc agatgatggt cctaccttcc aagaaaccgt cttcggttgg      2820
     gtagtttctg gccgtgttcc tggtagatcg gaacaaattt cgagaagttc ggcgtatatc      2880
     agttcaactg tagatcttcg agagttgctg actaggtttt gggagctaga gtcgtgcaac      2940
     aagaagagta ctttttccgt agaagaatcc atgtgcgaag agatatatca gcaaactaca      3000
     acccgagaca aggatggaag attcgtcgtc acgctgccca agaagcagta cgtcatcgat      3060
     cggctgggag actccaagac atccgctctc aagcgtctct atggattgga acgtcgtttt      3120
     gaacttaaca gtacactgaa ggctctatat agtgaattca tccaagagta tctctctatg      3180
     ggacacatgc gcgaagttac agcagaagag aacgaagttc cagcgtatta tctgccacat      3240
     cacgccgttc tgaagcccga aagcacgact acgaagctgc gcgtcgtgtt tgatgcttca      3300
     tgccgtactt ccacaggaat ttcgttgaat gatggattga tggtcggacc agtcgtccaa      3360
     gacgatttgc tatcgattat tctacggttt cgattttatc ggttcgtcgt agtcgcggac      3420
     atcgccaaaa tgtaccgcat ggtcaacgta tgccccaacg accagcctct tcagcgcatt      3480
     ctctggagaa actccaccaa cgaacccgtc aaggcctatc agctaaccac cgttacgtac      3540
     ggtactagtt cggcccccta ccttgcaaca aggtgtcttc aacagctagc aacggatggc      3600
     gaagaaactc acaaaagggc tgctccagcc gttcgaaaag ggttctatgt agacgacctt      3660
     ctgacgggcg cagacaccga agaagagggc aaggctcttg tagcggagat attggatcta      3720
     acgaactccg ctggcttcac actgcgaaag tggagctcca acagtgttga atttctatcg      3780
     agcattcctg tagatcttcg agatgatcga gctaccctgg aattggattc gtcgtcggcg      3840
     ccggtgaaaa ctcttgggct catttgggaa ccagcctccg acatgtttcg ttacgctgtg      3900
     ccacaatgga gctctcaaac cccaatcacc aagcgaatcg tactatcgga caccgctcga      3960
     atcttcgatc cgcttggtct catcggtcct gtagttgtcc aagcgaagat atttctgcaa      4020
     tcattatgga tcgaaggctg cgattgggac gatcctcttc ccgaaaagcc acaggaattc      4080
     tggcttgaat ttcgtcgaaa caccatcgcc ctcaagtctc tcgagatccc tagatggacg      4140
     tgctatacac catctctatc cagcgttgaa ttacacggat tctgtgatgc gtcacaggct      4200
     gcgtatggag catgccttta tcttcgttca gtatcgaccg ctggattaat tacggtaaga      4260
     ttgatcacgt cgaaatctag agtggcacca ttagaagatc tgaagcgcaa gaaacggaag      4320
     cagaacatcc ctcgtctaga attgtcgtcg gctgtactgt tgagccacct ttacgaaaag      4380
     ttcaccgaca gcattgaaac ccctcttaat gcgcatttct ggacagactc aatgattgtc      4440
     aaatgttggt tgtcgtcgct accctctcgt tggcaacctt tcatcgccaa tcgggtgtct      4500
     gaaatacagc acatcaccaa aaatggctct tggcaacacg tcgctggctc tgaaaaccca      4560
     gcagacatac tttcacgtgg tacgacagct gcccagttgc agtaccaatc gctgtggttc      4620
     gaaggtccct tttggcttcg ccaagaccgc tcagcgtggc caaagccttc gataactcaa      4680
     ccaatgatag atagcacgct actggaagaa agaagtgcag tttctctccc tgcccgtgca      4740
     agccctccaa acgaactctt ctcacttcgc tcgtcactca tgagcatggt tcgccttgta      4800
     gcctggcttc ggaggttcgt acacaatacc tcgccgaata atcgttcgac tagaagacaa      4860
     ggaagcctgt ctatgtcaga attggatgac tctctaacca ccctcgttcg tatcgctcag      4920
     catgaaagtt acccggagga attcgcggat ctgacgcgga gtcgccagtt gaagtcctcg      4980
     tcgaaattat cgttgttgaa ccccattctc atcgatggga cactccgcgt cggcggccgg      5040
     ctggcacatg caccaatctc cgagttccgt aagcatccaa tgattttgtc ccaccaacac      5100
     ccgctagcct tgctagtaat gcagcactat cacgttaaac tcctccacgc tggtcagcaa      5160
     ctcctgatag catccgttcg tgagaagttc tggcctacaa acgctcgtag tttggcccgt      5220
     acgatttgcc accgatgcat agactgcttc cgcagtaagc caaaagtgca cgagcagcta      5280
     atggccgacc tgccagctgt gcgtgtgagc ccatcagcag tcttttgcaa agtaggagta      5340
     gatttatgtg gcccattcta catcaagtac ccgattcgtc gaagcccagc agtcaagtct      5400
     tacgtggcaa tttttgtctg cctaataacc aaggcagttc acatggaaat cgtggctgat      5460
     ttgtctaccc aggcatttct gtccgcgttc agaagattcg tcgcaactcg aggaaaacca      5520
     caagtggtaa agtgtgacaa tgccaccaac tttgttggcg ccaatcgaga gcttgaagac      5580
     cttcgtcgtc agttcctaga ccagcaattt cagcatacca tcgttcgttc agcagaagac      5640
     gaaggcatac aatttgcttt catccccgca cgttctccca acttcggagg attgtgggaa      5700
     gcggccgtga aatccttcaa gggccacttt cggaggtcaa ttggaaccag acagctcagc      5760
     tacgatgaat taaacaccat tgtccagcaa gtcgcagctg ttttgaactc tcgcccgctg      5820
     acacctttga gtagtgatcc caatgacttt gcggcattaa ctccaggcca ttttctcatc      5880
     ggaagacctc tcacagcagt accggaacct gatgtccaag acattccgga gaatcgtttg      5940
     tccatatggc aaaaatccca ggaggctgtt caacagtttt ggaagacatg gaaaacccac      6000
     tacctgtccg atctgcataa ccggactaag tggacgaaac agcgtgataa tattcaaatc      6060
     gatacgatgg ttcttgtaaa agaggacaat ttgccgccgc agcgatggca gttgggacga      6120
     gttgaggaaa tattcccagg atcggacggc aatgttcgag tggttaaggt tcgcacgaag      6180
     gatggaagct tcaagagggc catttcgaag atttgtgtcc ttcccatcag ggacaacgcg      6240
     tcgtcatcag gagagttcta agactcttcc atcgcagagg tcgttcaaaa ggaggcctcc      6300
     gcttcccact tctcatcatt gtggcccatt ccgggacaca catcagaatc tccatcgcat      6360
     agccatctac caatccgtca atccctggga gaccgtcgtt ttgtgtcgtc aagcatgctc      6420
     tagttgtggc gtcgaagcag tacgattcgt ctcgttttag tcatccgatg tcctcaatcc      6480
     attcaggaga atctgtttcc catgttcaac attaatcgct tcatttcgtc agcatcacag      6540
     tttgtcatca caatccggag tagacccttc cgagcattag gtaccaatgt tcatcctgct      6600
     gttattgtac cgacaagcct tcgccaggga ctgatcaacc caatgcgatg gcccagtcaa      6660
     cttcagcaat agcgaccata aggactccag tgaggcagct tgtgaccatc gccatctcca      6720
     tcttcgttag ttttgagcga catcccgtcg ttttcatcag tgcctggggc actcgcggag      6780
     gccaggaggc ctccgctcca ggcaagttac gttaatgttc actaattcaa ggtaaaaagc      6840
     accctctcat ctgcagattc gtttgatgcc actccttcca ctcgccgtcg acgacggcga      6900
     cgatgtagac gacgacaatg acgatccgtt cgatgaagcc caaatgagaa gcatgtccac      6960
     tcagtcgacc gatctccaag caacagatag atgtccatac agtccacgtg tagcaacccg      7020
     ctacgatgtt caattccacg cgtcgagaaa gccgaaggtc gaatgcagcg aaatagaaac      7080
     cacccaatat tgcccacttc gagaagcaat tgtcgtccag caaccacaac agtccatcat      7140
     cgtaaacaat catcaccaac gatcggcagc tgccgagtcg tatagccagt tggcagaagt      7200
     aggccaaggt catcgtagta tataagacag tgtcaaaaaa ttcgcttagc ggtagaatta      7260
     gtttagcaag attcaaaaca aatcgagcca tgttcggcag aagtacatag ttgaagtaga      7320
     aatgtaggta gtacagtgta gattgaattt ttctgaacct tttatcattt gaaatgcaga      7380
     gatttcaagg cggccggca                                                   7399
//
ID   BEL-737_AA-LTR repbase;    DNA;    INV; 414 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-737_AA-I;
KW   BEL-737_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-414
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-414
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 590-590 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 414 BP; 116 A; 93 C; 92 G; 112 T; 1 other;
     tgttcagtcg cagcaattat ggcccttctg gcaccacaga tgcgatccac aaatgcttat        60
     cagcagtggt ctcgtttcat ctcccgtaga ttacttccca tccttatcac tgctatcagg       120
     tagagcaata ggagagatcg tctatgttcg tgtgtagata ttcaccacta atcatcggta       180
     tcactcagat atcggagcag tagscagtta taatcgtgcc gcgcgcgaga tcgcatcaaa       240
     tacacttttg cattaaaacc aaagtctatc gagcaataaa ttttcgattg tctcaagttg       300
     gagtgtagtt caataaacgg gagtgctggt aattcgacgc gcgtttgaaa tcgaggaacg       360
     aaaagtgaca actaggtccg aagtgttccc aagtcccggt ctagatagtg aaca             414
//
ID   BEL-738_AA-I repbase;    DNA;    INV; 7156 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-738_;
KW   BEL-738_AA-I; BEL-738_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7156
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7156
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 586-586 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 7156 BP; 1903 A; 1664 C; 1843 G; 1733 T; 13 other;
     tattggtcct tcgagccgga tttgccagac tcgtgaagga tacgtgttcc gtgtagtgcg        60
     cttggcttgg gtcgatacgg tcatcgacca gtgtacaaaa gaccagtgcg gtctgaattg       120
     attgccattg tactggcata gtgatagtgg gggatagtga atctgttctg ccggcgtggw       180
     gawacgttgg ggaaagtgcc cattctcgct gctgatgctg ctgtggtgaa gatttattcc       240
     gtcgcctttt ggggaawtac atgcgtggtt gctgtaggtg ctctagtggt tgctgttggt       300
     cttccaggag tgagaagtat ctcgttcgtc tgcagtggac atcaccatcg ataccaaagg       360
     ccccaggaca gtcggacttc agcagcagaa amcagataag tacagtgtgc gtgtgattgw       420
     gtggttgagg tggtttggct tggatagcat ttgtaccagc cataccgaaa gctctacgag       480
     cggtagagaa aattaagctc tgactgagtt ttaattgcat gcgatattgt actcatcagt       540
     agcattctgt ggagaaggtt ttgagattct ctggcttgat tatttatgtt ttgcctttta       600
     ggcacttctt gattgctcta tttcattgag aatttaccac ttggtggtac gttggcctgt       660
     caattgctgt caatcgttcg gtcgcttgag gtctcgggag tgagttgtgg cttagtgatt       720
     catagtgcgt gaccagtgtt tctacaacga tgccgacaac gcagcttcga cagctggtga       780
     agcaggagcg acacgcgcgg atttctttgg aaaacatcga agagttcctg tcgacgtacc       840
     aagaagaacg tgataagtgt accgtgcaac tgcgattgaa gaagttggac gatgtttatg       900
     aaaaatactg tgaattgaga gtgaatatcg aagtgctaac tgatgatctg gatatagaac       960
     ctgaaagtgc ggttggcgga atagaagagg aagctgagga tggagcgtcc agacaagctg      1020
     ccctggctga ggcccgccaa agggaaaatg ctgagatttt caaggaattt gaaaacaaat      1080
     atttcgattt gaagcagaag cttctttcga agatcggtgg atatccggga gctgttggag      1140
     agccgaaaca ggaggtccag ccccaggtta gccaggtatc gcggacaaga tatcctgagt      1200
     tgaagcttcc tacgttctcg ggaaggctgt tggattggat gaacttccga gacaacttta      1260
     catcgctgat ccacgacaac aatcacctta gtacgataga caaattcaac tatctacgta      1320
     cgtctctgaa ggatgaagct ctgtaccaga tcaaccagat ccaggttaca gcagccaact      1380
     atgakttagc ttggggtatc ctggagtcca agtacgagaa ccataagctc atcgcacagg      1440
     aacatttgaa ggcactgttc tctgttgctc ccatgaagtc ggagagtttt caagcactga      1500
     accatctcct gatgactttc aagataaacc tccaacagct ggagaagcta ggcgaaaacc      1560
     ctgatcaatg gagtacgctg ctggctttca tgctttctca gaagctggac gacgatacac      1620
     tccgtctatg ggaaacgcat catagttcaa agaacatccc gtcataccaa gccatggttg      1680
     acttcctgga gaaccactgt gcaatcttgc aatcaacttc agcgcggaag agcaacgact      1740
     tcaagaagtt caacaagaat cccatggttc atgctgcggt gtcgagcaaa ggctgccttg      1800
     tctgcaatgg gggaccgcat accgtggagc agtgtacgag ttttgggaag atgaaggtcg      1860
     tcgatcggaa atctcttgct cggaaacttg gattgtgtct taattgttta cgttccggtc      1920
     attttgtcgc ggattgtttg aggtctacat gtggcaaatg tggacaacgc caccaccagt      1980
     tgctgcatcc gtacagcaac gctgctggtc tggggcagaa tgtgaatcag ccctcctccc      2040
     agaagcactc taaaggacct caagccgcga actcccagtc tcagcaatct aatcaagccc      2100
     aaaaccggaa caattctcaa atcccacaga ctacactaac tccaagtaca tcttcgcaaa      2160
     atgcattctc gccacctccc accaaccctt ccactgtaca ccacactgct acatcatcca      2220
     acacacacca caaatcaaac actgctttgt tgtcaactgc tatagtgaag ctcggtgatc      2280
     ggcacggaaa tactattcat gctcgagctt tactggacag cggatctcaa gtctgcatga      2340
     tcactgagaa cttgtcgcaa aaactaaagt tccaaagact tcgggagaac ttaccagtcg      2400
     atggaattgg tggtctccgt tcgattgcta agcaagctat attagcaacg gtgttatcct      2460
     gtaatacttc gtacatgtct tgcgaggtca agttcgttgt actatcgaag attacatcaa      2520
     gcctgccgca gcagtacatc gatacttcga cgtggaatct acctacggga atatgcctag      2580
     cagatcccac attcaatgaa ccgggatcga ttgacgtgat cctgggaaat gctgttttct      2640
     tcgaactctt gctgagcgag cagctgaaac tctctaggtc gggaccgatt ctacacaaca      2700
     cggagttggg atggatcgtc gcaggagaag tacctgagtc aggagtcgtc agctacagcg      2760
     cattagcttc atcatccgtg actacagagg aagtcctgga ggaactgaca aagttttggg      2820
     agttagagtc ctgtcgaaca aagagctgtc tgtccatcga ggagtctgcc tgcgaagcca      2880
     tctttgagga gacaactaca agagatcctg atggaaagta tcgagttcag ttgccgaaga      2940
     agaaaaacat gctgcacaaa ctaggaagtt caaaggcgat tgcgaagaag cgatttcttt      3000
     cgatggagaa gcgactggat gaaaatccag aaatgaaggc catgtatgcg gaattcatgc      3060
     acgaatatct acgtatggac catatggaag aagtgctgac ggatgaggac gagctagctc      3120
     cggagtacta cgttccgcat cacgctgtca tgaaaccaga cagcacgaca acgaaactca      3180
     gggtagtttt cgatgcgtcg tgtcccacgg attcaggtgt atcgctaaac gatgtattga      3240
     tggtgggacc agtcgttcaa gacgatctgc ggagcatcct gttgcggttt cgtctgttca      3300
     ggtacgccgt agtaggggat gcagagaaaa tgtatcgcat ggtgtggcag cacgcgtcgg      3360
     atcaacagct acacaagatt ttctggagag attcgacgca ggagccacta cggacgtaca      3420
     ggctcaagac ggtcacctac ggtacatcat ctgcaccata cctagcgact cggtgcttga      3480
     acaaatgtgc cgaagatgga gcagaatgct acccagctgc tgcagcagtg gtcaagaaaa      3540
     gcttttacgt ggacgatatg cttgctggaa cccacacaat tgaggaaggg aaggagctgt      3600
     gcaaggacgt attcaagctt ctgaaaggat cagggttcaa tctccggaag tggaactcca      3660
     accatccgga aattctgcag gaaattcctt ccaacctacg agatgatcgt gcagttctcg      3720
     atctggacga gaaagctact gtgaagacgt tgggtcttac ttgggagcca gctacagaca      3780
     cgctaaggat aaaagtaccg gactggaggc ctgaagcatt ggtgactcat cgtattgttc      3840
     tgtcggaaat tgcaaagctt ttcgaccctt acggactagt aggtcctgtt atagttctgg      3900
     gaaagctgtt cctgcaaagc ctctggaagg agaagtactc atgggatgag gtactaagca      3960
     acgaactgca gacgcgttgg tcagagttta gaaccagcct taccgagctg gactcaatat      4020
     ccgtaccacg atggattgcc ttcagcaaag acgtgatctc atgtgaactc cacggattca      4080
     gtgatgctag cgaaaaggcc tacggtgcga ctatatacct gcggtgtatc agcacggacg      4140
     gtgaagtgac catcaacttg gtcatggcta agtcaaagct cgcaccactg gaagacttaa      4200
     gcaaaaagaa aaagaagcag aatatacctc gattggagtt gtctgcagca ctattgttag      4260
     ctcatcttta cgaagcagtg acggagagcc tgcaaatcgc agctaaggca tacttttgga      4320
     cggattcaac gattgttaaa tgctggatct cgtcacaccc atccagatgg caggtcttcg      4380
     taggaaaccg cgtatcggag atacaacatg ccacgaaggg tggcgtatgg aatcacgtgc      4440
     cgggaattga aaatccggca gatattatat cgagaggagc cacgccggcg gaaatagcca      4500
     acaactcgct atggtggaac ggaccggaat ggctgaagaa ggatatcggg cactggccac      4560
     aaaacatgca agctcacgag cagcaattcg attcgacaac gttggaggag agaccgcttg      4620
     tatcagcagt actacaagct ctgccgccaa gtccaatctt cacgcttcgt tcagctctac      4680
     tcagcatagt tcgcctagtt ggttggatac gccgatttac gttcaattgt cgacagcgga      4740
     atcgtcaaca aaggaagaca ggagttctta cagctgagga gcacgaatca gccctactag      4800
     ctctagtaca gctagcccag tcggaatgct tcccactaga awtgtcggac atcgcagcca      4860
     agaacgaagt tagaccatct tcgaagctgc acaatctgca tcctgtggtg atcgatggat      4920
     tgctctgcgt gggcggtcgg ctcggaaacg ctccagtttc gcgaagccgc agacatccca      4980
     tgattctgga cagtcatcat ccgctwacga agctcatcat gattgattat caccaccgac      5040
     tgctacacgc aggaccacag cttatgatag catgtgtccg agaaagattt tggccattga      5100
     gcgtcagaaa ccttgccaga caggtaatgc acgagtgcct gaaatgtttc agagcgaagc      5160
     cgcgtaccca tgaacagctg atgggagatc tgccactgga acgcgtgtcg ccagcccctg      5220
     cgtttttgcg tgtaggcgtt gattattgcg gtcccttcga attgaaacct ccaacccgga      5280
     aaggtgcacc ggtgaaatgc tatcttagca tcttcgtctg tctagttagc aaggcagtgc      5340
     atgtagaagt tgtgatggat cttaccaccg aggcatttat tgccgctctt aggagatttg      5400
     tcgcaaggcg tggaaggccg gagttgatac tctgcgacaa tgcttccaat ttcgttggag      5460
     ctcgtagaga gctgcatgaa ttgcatcgac tgttccagca acaacagttc caggaacgcg      5520
     tagcaacgga gacagcgcga gacttgatcg agttcaagtt tatccctgcw cggtcaccca      5580
     actttggtgg cctatgggag gccgcwgtga aatcgttaaa gggtcacatg aagcgagtga      5640
     tcggtaacag attgttgaag atcgatgaaa tgaacactgt tgttacccag attgaagcgt      5700
     gcttgaactc taggccactg actccgctga acaacgaccc tcgggatttg gaagccctaa      5760
     ctcctgggca tttcttaatc caacgcccwc ttaccgcaat agctgaacca aatctcagcg      5820
     ggctacgaga gggtaggctc agcaggtggc agcaagttca gaactacagc cagcaaatct      5880
     ggaaatgttg gtcaacggat tacttgtcaa gtctacaaag tcgcaacaag tggacgagac      5940
     aacgagacaa cttcggcatc ggatcaatgg tgctcttaaa ggaagacaac attccaccgc      6000
     tcaagtggaa actgggacga gtagaggaac tacatccagg ttccgacggc aacgtgagag      6060
     tkgtcaccgt ccgtacgaag gaaggatcat accgtcgagg gatttcaaaa atctgtattc      6120
     ttccactgca aaatgtccca ccgattgkcg aggagcagca tccagttcaa caataagtat      6180
     tatcgccccc atttggggca catttggcac cttgcggtga attcccgccg ctattgccag      6240
     ggggctctcc ccaagttacg tattacattt ttgtgtatgt ggaaaggaac tgatctgctc      6300
     tcccttgaca gtcaaactct gctgcccgta tgcctggata tttctttgct catcagtcta      6360
     caactactca atagcattca acgcccccat tgggggcaac cgttggcaat ctcgtggcga      6420
     tttgccacat ctgccgaggg ggccgacatc taagttacgt tcagcccttt caaattagta      6480
     tttcggatac aaagcgttat tgatcttcag cagatactca ctcatccctg gtacatcgtt      6540
     tgtcggtcac tcctgcgatc gaccaagcta agtatggccc cagtaggggc attattggca      6600
     gcaagcggca tttgccgcat tcgccagggg ccgcccttaa agttacgtag tcaaaaccca      6660
     aagatttgtt cggagcccaa tcggtttttc tcgtcaacag tattttctct acgacgactt      6720
     cagacccagt acgacagcca cttcagcaca gcgttttacg cccccatagg ggcacacttt      6780
     ggcaagaatg gagaactcgt ccgttatcgc cagggggcga cagataagtt atgtcccttc      6840
     aactatcagt ctgttctgga atcaagccat gttatttttc gacagcgtac ggcatccagt      6900
     ccatcggctg aagtcatgct gtagtacaag gtcttgcaga gtcttcaggg aatgtcgaac      6960
     gaggatcagt tgaaggcatc gcttacaacc agcttgaagg acggtcaggt ctagcctgta      7020
     gagcgccagg aggagctttt catcggaaga aacgagattg gtgatgtatc tggagaagat      7080
     ccgtatttaa atttgaattg ttcttgtata taggtattat aggtatttgg attgagtgaa      7140
     ctcaaggcgg ccggta                                                      7156
//
ID   BEL-738_AA-LTR repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-738_AA-I;
KW   BEL-738_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-415
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-415
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 591-591 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 415 BP; 113 A; 82 C; 107 G; 110 T; 3 other;
     tgttagatat agataggtac gatattttta cgcgccactg taccacgaga cagatcggca        60
     aatgagtgac cgcaatgctc taggtagata gcaatagctc atatgttgat tcccagagag       120
     agataacccg atgagggatc gagttaatct cttgcagcat cccttgatgc agagatacga       180
     aggagattta gttataacca aaccaccggc ggcatcggta tcgaccgttg gaccgtcgcg       240
     tcgcgtawcg taaatacagt ccactgtgtg aagwgaataa attagttctg ttggtttcka       300
     ttgaagtgcg aataattcat ttaatttcgt gtgatcgtat cacaagtggt cgcgtagtgt       360
     acggacagtt gattcgcggg tgtttcgctg aagtgcgaac cgggagtatc ccaca            415
//
ID   BEL-739_AA-I repbase;    DNA;    INV; 6202 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-739_;
KW   BEL-739_AA-I; BEL-739_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6202
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6202
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           699..6059
FT                 /product="BEL-739_AA-I_1p"
FT                 /translation="MTDGHQQAEMPTLQSRSQLIARRTTLLAALGRAEAFA
FT                 TGYDPQRDQAQLPLRLEYLNGVWSNLEAVQSQIEDSETTDEGRTEHANVRA
FT                 EFEPRLFEIKASLISKLPPPSVFAAQVPQPPQVSSTLSGIKLPTISLPEFD
FT                 GDYMQWLAFHDTFLALIHSNADVPDIQKFHYLRAAVKGEAAQLIESIGISS
FT                 ANYALAWETLRNRYSNDYLLKKRHLQALFDIPCMKKESAASLHGLVDEFER
FT                 HTKILNQLGEPTDSWSTILEHLLCTRLHNDTVKAWEDHASTVEDPNYVCLI
FT                 DFLQRRTRVLESISVNNHGPNTVISNGNPAQQLKKNHHHSQYKVSSYSTTT
FT                 IAGQKCIACGQSHAVIRCQNFINLSPNERQHLVNSKRLCHNCIKGNHFARS
FT                 CPSSFSCRICNRRHHTLLHPEQPEAARKSINQVPSNPVTPTPANSNAPSVI
FT                 ESPTQSMVTAAKAILPVEVSTAVQHPRENVFLLTVVLKITDDHGIEHLARA
FT                 LLDSASQPNLITDRMARILRLRRQKVNVTVQGAGRHSNTVHESVFAHIQSR
FT                 KGDFSCGVNFLVMDKLTANLPSQSVSTVGWKMPTDLFLADPSFSESQPIDM
FT                 LLGAKHFYSFFPSAARVQLDENLPLLVDSVFGWIVVGCSKSVSPTQCATTC
FT                 ETVTVSMISLEQSLERFWQTEELTSADTYSVEERRCEALYESTVTRNTEGR
FT                 YIVRYPKKPDFNQMVGESKENAHRRFKHLEKRLERNPQLKQEYHQFMEEYL
FT                 SLGHMRVVEADEEENSPAYYLPHHPVIKEASTTTKVRVVFDGSAKTSTGFS
FT                 LNEALCVGPVVQDDLLDIILRFRTFPVALVGDIAKMYRQVLIHPDDTPLQR
FT                 ILWRFSQQTAVQIFELLTVTYGLAPSSFLATRTLQQLAEDEGEAFPKAAPA
FT                 LKKSFYVDDFIGGAQSVQEAIHLRSELSCLLEKGGFELRKWTSNRLEVLQG
FT                 LNDAQVGTQSSLQFVPHETIKALGISWEPESDLLRFDSQVHCRNEHPTKRS
FT                 ILSDIAKLFDPLGLIAPVVVRAKILMQELWLLSCDWDDPVPDPVKSKWESY
FT                 HQDLSKISQHRVERYAFLPNSNIQLHTFADASQSAYGACTYVRCEDAQGTV
FT                 RIQLLASKSRVAPLKRLTIARLELCAAVVAAHLHDRIKKAINVDVSSSYFW
FT                 SDSSVTLQWIRAPPNTWPTFVANRVSEIQQFTHGCQWKHVRGIENPADLIS
FT                 RGISVDEFLESHLWSQGPNWLASSPQDWPISKPPGVPEEELEIKPTVAVIQ
FT                 ESTTIHPIFLRWSSYSRLLHVVAYINRFVANTRSKIRTQSSAKGSVIGMSL
FT                 TVAEIAKAKTILVRLAQEDEYKEEIKQMKKSKVVHKQSHIRRMNPFFDPEG
FT                 VLRVGGRLNLAQLPYQAKHPVLLPSNHPFTRLIFEHFHRKLLHGGGRQLLT
FT                 VIREEFWPPRGRRLAQSVVRNCFRCTRLIPTPATQQIGQLPLQRVTPSRPF
FT                 DVTGVDYAGPLYLRPIHKRASPAKAYLCLFICFSTKAVHLELVSDLSTQGF
FT                 LNSLRRFIARRGRPSHIHSDNGKNFEGAKNELTELFHRFHDVTQQDTIASA
FT                 CADEGINWHLMPPKAPHFGGLWEAAIKVAKRHLYRQLGSTRLSFEDMCTVL
FT                 IQIEAAMNSRPLLPMTEDPNDLLALTPAHFLIGSSLQSLPGPDLHKVPSTR
FT                 LQHYQQLQQHVQKFWIHWRKEYLQELQRDTRGWKRNDEIVPGRMVILIDEM
FT                 QPTLRWPLARIQSILPGKDGLTRVVLLRTARGTITRPITKICLLPNAIGTN
FT                 NCENLPASSVNDPEGQ"
XX
SQ   Sequence 6202 BP; 1611 A; 1592 C; 1391 G; 1608 T; 0 other;
     taatttttgg tgccgtgacc aggatttcgt cctagtcaac acgtgctgag ttgtccactg        60
     ggcgctgcca tcttggacgc tagtatatca gtggaactgt cgccttcctg tttgctgctc       120
     gtaattgaat acaaggctcg tttaatcggg cgccaggtaa cgatctgtcc gatctgattt       180
     tgcgggtatc acaggtgccc tttagatacc tttatttcct ttttcataca ctgctacaaa       240
     gaatcgatct tgctggacta ttgctgccat tcatccccga gtgtggcttt gtctgagcgc       300
     catcttcctg gtcgattaca atcgcatctt tgttcacgtg gcgttcccag ccctagtgat       360
     acttgaaaag aaataccgtg gatttctttc ctgtggcgtc cccagctaca gtaacactgg       420
     ttgacagaaa tcagtcagtg cgagtttttg gacacctaca cgtgcatcgt agaccgatca       480
     tcagagattt gctgatccaa cttggcattc actacggaca gtgctgcctc gagttccagt       540
     aggcagaaat tagttcaagg catattctgc cttggataag gtgagtacct ttccaagagc       600
     tttatcctta tctccgtggg tctacttgtg gtcttttggt tggcaggtcg cttctcgatt       660
     ggaacccttt tctattggat aagacactac cgcaaaggat gacggacggc catcagcaag       720
     ccgagatgcc aacgttacag tcccgaagtc aactcatagc acgccgaacg acacttcttg       780
     ctgcattggg ccgggcagag gcatttgcga ctggatacga ccctcaacga gatcaagcgc       840
     aactaccatt gaggctggag tatttgaatg gcgtttggag caacctagag gcagtgcaat       900
     cacaaataga ggatagcgag acgactgatg aaggtaggac agagcatgca aacgttcggg       960
     ctgagttcga gcctcgactt tttgaaatta aagccagtct gatttccaaa ttgcccccgc      1020
     cttctgtttt tgccgctcaa gtccctcagc cccctcaagt ttcctccact ctctctggga      1080
     ttaagctgcc gacaatttct ctgccagagt tcgatggaga ttacatgcaa tggcttgcat      1140
     tccacgacac ctttctggcg ctcattcatt ccaatgccga tgtgccagat attcaaaaat      1200
     ttcattattt gcgagcagct gtcaagggcg aagctgctca gctaattgaa tcaattggaa      1260
     tcagttccgc taactacgct ttggcttggg agacgctgag gaaccggtat tcaaatgact      1320
     atcttctgaa gaagcgacac ctgcaggcac tctttgacat tccctgtatg aagaaagagt      1380
     ccgctgcatc tctgcatgga ttggtggacg agtttgagcg ccatacgaag atcctgaatc      1440
     aattaggaga gccgacagat tcgtggagca ccattttgga gcatttgctg tgcacgcgtc      1500
     tgcacaacga cacggtgaag gcttgggagg accatgcgtc tactgtggag gacccaaact      1560
     acgtatgtct catcgatttt ctccagcgac gaacgagagt tttggagtca atttctgtga      1620
     acaatcatgg accgaatacg gtgatctcta atggaaaccc tgcgcaacaa ctgaagaaaa      1680
     accatcatca ttcccagtac aaagtttcat cgtactccac caccacgatt gcagggcaga      1740
     agtgcattgc ttgcggccag tcacatgctg tgattaggtg ccagaatttt atcaaccttt      1800
     cgccaaacga acgtcagcat ctggttaact caaaacgcct gtgtcataac tgcatcaagg      1860
     gaaatcactt cgctcgtagc tgtccgtcca gtttcagctg ccgtatatgt aatcgacgtc      1920
     atcatacact gcttcatcct gaacaacccg aagctgcacg taagtccatc aatcaagtcc      1980
     cgtctaatcc ggtaacgcct acgccagcca attcgaatgc tccatcagtt attgagtctc      2040
     caacgcaatc catggttact gctgccaaag ctatcttgcc tgttgaagtt agcactgctg      2100
     ttcaacatcc ccgtgaaaat gttttcctac tcaccgttgt tttgaaaatt accgacgacc      2160
     atggtataga gcatctagct cgagcgcttc tggatagcgc ttcacaacca aatctgataa      2220
     cggatcgaat ggcgaggatt ttgagactgc gacggcagaa agtaaacgtt actgtgcaag      2280
     gagctgggag acattcgaat acggtgcacg aatcagtttt tgctcacatt caatctagga      2340
     aaggggactt ctcgtgcggc gttaacttcc ttgtgatgga caaactaact gccaatctcc      2400
     catcgcaaag tgtctccacg gtaggatgga agatgcccac ggatttgttt ctcgcagacc      2460
     cgtcattcag cgagagtcag cctatagaca tgttgcttgg agctaagcat ttttattcgt      2520
     ttttccccag cgctgcgcgt gttcaattgg atgagaatct cccactctta gtagatagcg      2580
     tttttggttg gattgtcgtc ggatgctcca agtcggtctc tcctactcag tgtgccacta      2640
     cttgtgaaac agtcacggtt tcgatgatat cgttagagca atctttagag cgattttggc      2700
     agacagaaga gctgacatct gcggacacct attcggtcga agaaagacga tgtgaagcac      2760
     tctacgaatc aacagttact cgtaataccg aaggccgtta tatagttcgc taccccaaga      2820
     aacctgattt taatcaaatg gtcggcgaat cgaaagagaa cgctcatcga cgattcaaac      2880
     atctagagaa gcgactggaa cgaaatccgc aattgaagca agaatatcat cagttcatgg      2940
     aagagtatct ctccctcggc catatgcgcg tggtcgaagc ggacgaagaa gaaaattctc      3000
     cggcctatta cctgccccac catcccgtga ttaaggaggc gagtacgacg acgaaggttc      3060
     gggtcgtatt tgacggctct gcaaagacct ccaccggctt ctccctcaac gaagctcttt      3120
     gcgttggtcc cgtggtgcag gacgatctcc tcgacatcat tttgcgtttt cgtacctttc      3180
     cagttgctct cgtcggcgac atcgccaaaa tgtaccgcca agtacttatc caccctgacg      3240
     acacgccact acaacgtatc ctgtggcgat tttctcaaca aactgcagta caaatattcg      3300
     aacttcttac cgtcacgtac ggcttagcgc catcgtcctt cttagcaacg cgcacccttc      3360
     agcagctcgc agaagatgaa ggagaagctt ttccaaaggc tgctccggcg ttgaaaaaga      3420
     gcttctatgt tgatgacttt attggaggag cacaatctgt tcaggaagca atccatctac      3480
     gatccgaact aagttgtcta ttggagaaag gtggtttcga acttcgaaaa tggacatcca      3540
     atcgacttga agtccttcaa ggccttaacg atgcgcaagt tggcacccaa tcttctcttc      3600
     agtttgttcc ccatgaaacc atcaaagcac ttgggattag ctgggagcct gaaagtgatt      3660
     tgctccgatt tgactcccag gttcattgca gaaatgagca tcctacgaaa cggtcgatac      3720
     tttctgacat tgccaagctt ttcgaccctc ttggactcat cgcacccgtt gtggtcagag      3780
     caaaaatcct catgcaggaa ctatggttgc tatcctgcga ttgggacgat cctgtaccgg      3840
     atcctgttaa gtcaaaatgg gaatcatacc accaagactt atcgaaaatc tcccaacatc      3900
     gagtggaacg ttatgccttt cttcctaatt caaacatcca gcttcacacg tttgcagatg      3960
     catcacaatc tgcatacggt gcctgtacct acgtgcgttg cgaagacgca caggggacag      4020
     tacgtatcca gctccttgca tcgaaatccc gagtagcccc acttaaaaga ctcactatcg      4080
     ctcgtctcga attatgcgca gccgtggtag cagctcattt acacgaccga atcaagaagg      4140
     ctattaacgt tgatgtttcg tcctcctact tctggtcgga ttcttcagtt acactgcaat      4200
     ggattcgggc gcctccgaac acctggccga cattcgttgc caatcgggtt tcggaaattc      4260
     agcaatttac gcatggctgt cagtggaaac atgttcgtgg aatcgagaac ccagcagatt      4320
     tgatatcacg tggcatttct gtggacgagt ttctggaaag tcatttatgg agtcagggtc      4380
     caaattggtt agcaagttcg ccacaagact ggccgatctc caaacctcca ggagttccag      4440
     aagaagaatt ggaaatcaag ccaactgttg ctgttattca ggaatcaaca accattcacc      4500
     cgatattcct tcgctggtcc tcctacagcc gcctgcttca cgtcgttgca tacataaatc      4560
     gcttcgttgc caacacccga tccaaaatac gcacacaatc atcagcaaaa ggttccgtta      4620
     tcggtatgtc gctcacagtt gccgaaatcg ccaaagcaaa aaccattctc gttagattag      4680
     ctcaagaaga cgaatataag gaggaaatta aacaaatgaa gaagagcaag gtcgtgcaca      4740
     aacagtcgca cattcgtcga atgaaccctt tctttgaccc agagggagtg ttgagagtcg      4800
     gaggtagatt aaatctcgcc caactaccct accaggctaa gcatcctgtc ctactacctt      4860
     ctaatcatcc attcacgcga ttaatcttcg agcactttca tcgtaaattg cttcatggcg      4920
     gcgggcgtca actccttact gtcatccgag aggaattctg gccaccgagg ggccgtagac      4980
     tggcacaaag tgttgtaaga aactgcttcc gctgtactcg cctaatccct acgccagcca      5040
     cacagcaaat cgggcaattg ccacttcaac gagtcactcc aagccgtcca tttgatgtga      5100
     ccggcgtaga ttatgcgggt ccactttacc ttcgtcccat tcacaaacgc gcatctcccg      5160
     ctaaagccta tctgtgcctg tttatctgtt tttcgactaa agcggtacac ttagaattgg      5220
     tcagtgactt gtctacacaa ggcttcctca attcattacg ccgctttatc gctcgacgtg      5280
     ggcgtcccag tcatatccac tcagacaatg gcaaaaattt cgagggggca aagaacgaat      5340
     tgaccgaact atttcacaga ttccacgacg tcactcagca agacaccata gcttctgctt      5400
     gcgctgacga aggcatcaac tggcacttaa tgccaccaaa agctccccat tttggtggcc      5460
     tttgggaagc tgctatcaaa gtggcaaagc gacatctcta tcgacagtta gggtcaacac      5520
     gattatcgtt cgaggatatg tgtacagttc tgatccagat cgaagccgcc atgaattcgc      5580
     gcccattatt accaatgaca gaggacccga acgatttgct agctttgaca ccggcccact      5640
     tcctaattgg atcgtcgctg caatctctgc ccggcccaga cctgcacaaa gtgccatcga      5700
     cccgacttca gcactatcag caacttcaac aacacgttca aaaattctgg attcactgga      5760
     ggaaggagta tctgcaagag ttgcaacgtg acactcgcgg ttggaagcgc aatgatgaaa      5820
     tcgtcccagg tcgaatggtt attctaatcg atgagatgca acccactctc cgatggcctc      5880
     ttgctcgcat ccaatcgata ctgcctggaa aagacggtct aacgcgagtg gtgttgctgc      5940
     gaactgctcg tggtactatc actcgtccga tcaccaaaat ctgcctgctt ccgaacgcaa      6000
     tcggtaccaa caattgtgaa aatcttccag cgtcttccgt taatgatcca gagggacagt      6060
     aggcgtagaa tccagcgtta aattaagcaa agaaccatca aatttctgtt agtattaaga      6120
     gcaaaacagt tatgcattca gtagcgatag tttcaatgtt atttgttttt gttttgaaca      6180
     taatagttca aggcgacggg ta                                               6202
//
ID   BEL-739_AA-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-739_AA-I;
KW   BEL-739_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-396
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-396
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 592-592 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 396 BP; 113 A; 95 C; 92 G; 96 T; 0 other;
     tgttggttca gaatctgaat tgttgaaact gcgtgagaat catcttctca cgtagtagtc        60
     ggtgctaccg ctcgtagtta aggtgagatt tttagccact ctggcaacac agtcagtgca       120
     gctgacgatg atgatcggga accagcatac tgcgatcgac caccacagtc agtcgtagtt       180
     agcaagttaa atagacaaca cagctgataa atctaaatct ttagtcacag tgaagatccg       240
     attctctctc ctcctaacaa aatcaatgtg caagtgcaag tgcgattccg ctgcatgtcc       300
     ctgagaggcg cttagtgtca gccttacacc gtcggacacc tacgaaattc tggtgaggat       360
     aagcgaaaaa gcacaacgta gggccgcacg ccatca                                 396
//
ID   BEL-73_AA-I repbase;    DNA;    INV; 5242 BP.
XX
AC   supercont1.277;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_AA_;
KW   BEL-73_AA-LTR; BEL-73_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5242
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.277; Positions 1014332 1019573.
XX
CC   Positions [4273-4860] - Integrase core
CC   'CCAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..5214
FT                 /product="BEL-73_AA-I_1p"
FT                 /translation="MSPSMTLEQLEIRRSAVDGKLKRTNVRVNKLETAKVS
FT                 VDDLNAELENLHVLWQDFREVHQAILDLCPDVQAIEPHLDMEAALEKRYLT
FT                 LKATITQFIRVTANRDNPPNAGGSSSGPLATPETALVPPELHLPKGILPTF
FT                 SGDYGEWNSFHDLFISSVHNNPRLTNAQRLFYLKTYTTGRAAALLKYIKVE
FT                 DNAYAGALDILKKRFDRKDQIVNHHIQRFCEIPNTSVPSVAGLRKLHETAD
FT                 DVKRALQAIQREDRDCWLIYLLLAKVDSESRQQWSDKIATKQAPPTLEEFL
FT                 EFLEQRTYSLETAHAPAPKSPAKYTGRPQPRSSSFLSTNEDLKTPSKCSVC
FT                 NEAHHKLYYCKRFQEIPVAERIRVVNQLGLCKNCLCKSHGRNSCSAGDCRK
FT                 CKQRHHTLLHEGPSIDSIPATGSKLSFGVINQLSYNDCFTSVFLATAVVTL
FT                 TDSNGQQHAARALLDSASQANFITANLSKRLGLKPHRINLPLKGISGLATR
FT                 ITEAVKIDMKSRVSDTEIRIDCAVLPKIADPIPHQLADISDWELHPSRPLA
FT                 DERFNIPGNVDLLIGASVFYNLLRAKRISLGPTKPVLQETALGWVVAGFYE
FT                 STNATKASPLCFVSQVEPEAEASLSQLVAKFWEIEDFKPTKYLTKEEKFCE
FT                 DHYVRTTVRDPSGRYVVKLPFIRDPATIGDTGYSVLSQFTTMQRKLQRDPP
FT                 KYVLYHQYMDAFIAANHISRIEPDPNHSKIIYLAHHGVVKSESTTTKLRVV
FT                 FNAAQKSSNGLSLNNLLATGPVVQDTLYNILINFRLHAIVLTGDIEKMYLQ
FT                 IRVTEEDSKLIRLLWQEPGQPLAEYCVNTVTFGMSCAPFLATRTLNQLAED
FT                 EESKFPLAKEAIKDFYVDDALTGAATKEEAIEKRQQLTDMLKRGGFTIRKW
FT                 ASNDPDVLAEVPPEDRAVNPVQAVDSQDTIKTLGIQWQYREDLFTFKATCD
FT                 PLKEYFTKREVLSTIAKIYDPLGLVGPVVVIAKMMMQELWKMKIDWSEPLA
FT                 NQFNHRWRTYLTHLKDIWLVKVPRRCISVQNPVQYHLHGFCDASLEVYGAA
FT                 VYLRSVDESGTVSSHLLGSKSRVAPINRPPLQRLELCAAALLADLIKAIKS
FT                 TIRIPIHQTLGYSDSTTALAWISGDPARWKVFVANRVALINSIIPASDWRH
FT                 VPTKKNPADLLTHGAAPCVLAQSELWWSGPSWHPSVMAESHPRPTITEEEI
FT                 IDSEVRRNPPILSYLLTTSDVIEDLLHKHSRYLKLVRVVAWIIRFGHNCEM
FT                 ERSRRTVGPLTVEELIGARNMLIRYTQHQAYGAEITALESGLPLPDHSKLL
FT                 PLSPFIDSCLVRVGGRLARSNLPYNAKHPLIIPANSRLATIVFEHEHRRNH
FT                 HLGPTSLLSAVRATYWVPQGRQLARNTVWHCVPCHKHNPNRGMLHQIMGQL
FT                 PAHRLNQAPPFYICGVDYAGPITLVERRTRGTPSTKGYIAIFVCFVTKAVH
FT                 IEAVSKLSTRAFLAAMRRFVARRGHCGHMYSDNGTNFVGAVNEMRHWYTKI
FT                 STSDHNHRVADFLAMGGTQWHFNPPGSPHMGGLWEAAVKSAKHHFNIVAHN
FT                 ARLTFEEFTTLLVEIEGILNSRPISPASSDPNDLQPLTPGHFLIGRPLTSS
FT                 NEQDYNPSPDEPYDVRFRYIQELRQHFWDRWSKEYVPELQTKGKWHRATNL
FT                 LHENDLVLIKQAKLPVNQWLIGRIIKVHQAPDGNPRLASVKTSSGEIVQSV
FT                 HNLSKLPIQSGN"
XX
SQ   Sequence 5242 BP; 1426 A; 1468 C; 1274 G; 1074 T; 0 other;
     tttggcgctg tagacaggat gtctccttct atgactttgg aacagttgga aattcgacga        60
     tccgcggtcg acggaaaact aaagcggacc aacgttcgag tgaacaaact cgaaactgcg       120
     aaagtgtcgg ttgacgattt gaatgccgag ctagaaaacc tacacgtgtt gtggcaagat       180
     tttcgtgaag tgcaccaagc cattctggac ctctgcccgg atgtccaagc tatcgagcct       240
     catttggaca tggaagctgc cctggagaag cgttacctca cgctgaaggc cacaattacc       300
     cagttcattc gagtgacagc caatcgggac aatccaccta atgccggtgg atcgagttcg       360
     ggtccattgg caactccgga aactgcgttg gttccccccg agctccacct tccgaaggga       420
     attctcccca ccttttcggg agactacggg gaatggaact cattccacga tttgttcatc       480
     agctcagtgc ataacaaccc acggttgacg aatgcacaac gtctattcta tctgaaaacg       540
     tatacgacgg gaagagccgc tgctctgctc aagtacatca aggtcgagga caatgcttac       600
     gctggtgccc tagacatact gaagaagcgc ttcgatcgga aggaccaaat cgtcaatcac       660
     catattcaac ggttctgtga gattccgaac acgagtgttc catcggtagc gggtctacgc       720
     aagctccacg aaacggccga cgatgtcaag cgggcactac aggccattca acgcgaggat       780
     cgagactgtt ggttaatcta cctcctgctg gccaaggtag attccgaatc cagacaacag       840
     tggtccgaca agatcgctac aaagcaagct ccacctacgt tagaggaatt cttggagttc       900
     ctcgaacaac ggacatattc tctggagacc gcccacgctc cagctccgaa atcccccgca       960
     aagtataccg gtagaccgca accgcggagt tctagcttcc tgagcaccaa cgaagacctg      1020
     aaaactccgt caaagtgttc cgtctgcaac gaagctcatc acaagctgta ctactgtaag      1080
     cgattccaag aaattcccgt cgcggagcga atccgggtgg taaaccagct cggcctgtgc      1140
     aagaattgcc tctgcaagtc tcacggaaga aactcctgtt ccgcgggcga ctgccgcaag      1200
     tgcaagcaac gtcaccacac gctactccac gaaggtccgt caatcgattc tattccagct      1260
     acgggcagta aactctcgtt cggagtcatc aaccaattgt cctacaatga ctgtttcaca      1320
     tccgtattcc tcgccaccgc cgtcgttact ctcaccgatt ccaatgggca gcaacacgcc      1380
     gcccgtgcat tattggattc cgcgtcgcag gcaaacttca tcacagccaa tctctcgaaa      1440
     aggctgggac tgaaaccgca ccggatcaat ctgccgctca aaggaatctc aggactggcg      1500
     acgaggatca ccgaagcggt caaaatcgac atgaagtcac gagtttctga taccgagatc      1560
     cgaatcgact gtgcagtact accaaaaatc gccgatccca tcccgcacca gttagcagac      1620
     atctccgact gggaacttca ccccagcagg ccgctggcgg acgagcggtt caatattcct      1680
     ggaaacgtgg atctgctcat cggggccagc gtcttctaca acctgttgcg tgccaaacgc      1740
     atctcgctgg gtccaaccaa gccagttctc caagaaaccg ctttaggctg ggtagtagcc      1800
     ggattctacg agtcaaccaa cgccacgaag gcgtctccat tgtgctttgt ctctcaagtc      1860
     gaaccagaag ctgaagcatc cctgagtcag ctcgtcgcca agttctggga gatcgaggat      1920
     ttcaagccga ctaaatacct tacgaaggag gagaagtttt gcgaggatca ctatgttaga      1980
     accacggtcc gcgatcccag cgggcgatac gtggtgaaac ttccgttcat tcgagaccca      2040
     gcgacgatcg gcgacaccgg ctactctgta ttgtcccagt tcaccacgat gcagcgaaaa      2100
     ttacaacgcg atccaccaaa gtacgtactt taccatcagt acatggacgc gttcatcgct      2160
     gcaaaccaca tctcgagaat tgaaccggac ccgaatcatt ccaagatcat ctacctggca      2220
     catcatggag tcgtcaagtc cgaaagcact acgacgaagc ttagagtagt cttcaacgca      2280
     gcccagaagt catcaaatgg cttgtcgctc aacaatctgc tggccacggg gccagttgtc      2340
     caggatacgc tctacaacat cctcatcaat ttccgtctcc acgctatcgt ccttactgga      2400
     gacatcgaaa aaatgtacct gcaaattcga gtcacagaag aagacagcaa gctcatccga      2460
     ttgctgtggc aagaacccgg gcaaccgctg gcggagtact gtgtcaatac ggtcacgttc      2520
     ggaatgtcgt gtgcaccgtt tctcgccacg aggaccttga atcagctagc ggaagacgaa      2580
     gaaagcaagt ttccactggc taaggaagcg atcaaggact tctacgtcga cgatgcacta      2640
     acaggcgcgg ctacgaagga agaagcgatc gaaaagagac agcagctcac cgacatgctg      2700
     aagcgcggag gtttcaccat ccgaaaatgg gcgtcgaatg atccagacgt actggccgaa      2760
     gtccccccag aggatcgagc ggtgaacccc gtacaggctg tggacagtca agacaccatc      2820
     aaaactctcg gcatccagtg gcagtatcga gaagatcttt tcacgttcaa ggctacatgc      2880
     gaccccctaa aggagtactt cacgaagcga gaggtactat ccacgatcgc caaaatctac      2940
     gacccgctag gactggttgg cccggtagtc gtcatagcca aaatgatgat gcaagagctg      3000
     tggaagatga agatcgactg gtccgaacca ctggcgaacc aattcaacca tcgttggcga      3060
     acctacctaa ctcatcttaa ggacatctgg ctggtcaagg tacctcgacg gtgtataagc      3120
     gttcagaacc cagtgcaata ccacctacat ggattctgcg acgcatcgct tgaggtttat      3180
     ggcgcggccg tctacctacg atcagttgac gagagcggca cggtcagttc ccatctcctc      3240
     gggtccaagt cacgagtcgc acccatcaac cggccgccat tgcagcgttt ggagctctgt      3300
     gcagcagcat tgctggccga cctcatcaag gcgattaaat ctaccatccg catccccatt      3360
     catcaaacgc tgggctacag tgactcaaca acggccctgg cgtggatttc cggcgatcca      3420
     gcgcgatgga aagtgttcgt cgccaaccgc gtagcactca tcaactccat cattccagcg      3480
     tccgactgga gacacgtccc cacgaagaaa aatccagcag accttctgac gcacggagca      3540
     gcaccctgcg tattagctca atcggagctg tggtggtctg gaccgagttg gcatcccagc      3600
     gtgatggcag agtcacaccc aaggccaacg atcaccgagg aagaaatcat cgacagcgaa      3660
     gtccggagaa atccaccaat cttatcatac ctcctaacaa cgagcgacgt catagaggat      3720
     ctactacaca agcactcaag gtatttgaag ctcgtcagag tggtggcgtg gatcattcgt      3780
     ttcggtcaca attgtgaaat ggaacgtagc cgccgaacgg taggaccact aaccgtcgag      3840
     gagctgattg gggctagaaa catgctgatt cgctatacgc aacatcaagc ctacggagcc      3900
     gaaattactg cactcgaaag cggtcttcca ttacccgatc acagcaagct tctaccgctg      3960
     agtcccttca tcgacagctg tctcgtcagg gtgggcggcc ggcttgctcg atcaaatttg      4020
     ccgtacaatg cgaagcatcc gctgatcatc ccagcgaaca gcagactggc aacaatcgtg      4080
     ttcgagcacg agcataggcg gaaccatcat ctgggaccga cgtcactact ttccgcagtc      4140
     agagcgactt actgggtacc gcaaggaaga cagctagcga ggaacaccgt ctggcattgc      4200
     gttccatgcc ataagcacaa cccaaatcgt ggaatgctgc accaaataat gggacaactt      4260
     ccggcgcatc ggctgaacca ggccccaccg ttctacatct gcggagtgga ttatgcggga      4320
     ccaataacgt tggtggagag acgcacccgc ggaacaccat cgaccaaagg ctatatcgca      4380
     atcttcgtgt gcttcgtgac aaaagcggtg cacatcgagg cggtgtcaaa gctttccaca      4440
     cgagcattct tggcggccat gcgaagattt gtggccagaa gaggacattg tggtcatatg      4500
     tatagtgaca atggcaccaa cttcgtaggt gccgtcaacg aaatgcgaca ttggtacacc      4560
     aagataagca cctccgatca caatcaccga gtggcagatt ttttggcaat gggcggaaca      4620
     cagtggcatt tcaatccacc tggatccccc catatgggag gactatggga agcggccgtg      4680
     aaatccgcca aacaccattt caacatcgta gcgcataacg ctcgtctcac gttcgaggaa      4740
     ttcactactc tgctcgttga aatagaagga attcttaatt cacgacccat ctcaccagct      4800
     tcgagtgacc caaacgatct gcagccctta acaccgggac actttcttat tggacgaccg      4860
     ttaacatcca gcaacgagca agattataac ccaagcccag acgaaccata tgacgttcga      4920
     ttccgttaca tccaagaact gcgacagcac ttttgggacc gctggagtaa ggagtacgtc      4980
     cccgaactgc aaaccaaggg taagtggcat cgggcgacca acctgttaca tgaaaacgat      5040
     ttagtactga taaagcaagc aaaactacca gtaaaccagt ggctaatcgg aagaattatt      5100
     aaggttcacc aagcaccaga tggaaaccca cgattagcat cagtgaaaac atcgagcgga      5160
     gaaattgtac agtcggtaca caacttaagt aaattgccaa tccaatctgg aaattaaaaa      5220
     cattcgtttt tggcgggagg ca                                               5242
//
ID   BEL-73_AA-LTR repbase;    DNA;    INV; 726 BP.
XX
AC   supercont1.277;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_AA_;
KW   BEL-73_AA-I; BEL-73_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-726
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.277; Positions 1013606 1014331.
XX
SQ   Sequence 726 BP; 270 A; 134 C; 125 G; 197 T; 0 other;
     tgttgcggcc aagccagttc ataatcctga aaaagaaata gaaatgaaaa tgtaattaaa        60
     ttaagaatat aaaatgaatt tatacttacc gatttcattc cccatcaatt ctcgcatcaa       120
     ttccaaaaca atgttatgag tggtgagctg atttgacagc tacatattta tgctttaagg       180
     atagtagtag taggcaattg agttaccata cacacattag agcgttggca gaactgtgcc       240
     gctgtaaact tgcatacaag ttctctagac agggaaagca aatgtcagtt caaagtatgt       300
     gtttacatat acacaaattg accgttgaac aatcatgatc acgcaagcaa aagaaaatta       360
     taaaggcttt agaagacaaa tgaaagatga aaaaacagct ttaaatgaaa cagatctatc       420
     acaataggtc ccatatgaat ccatggatga aaaatgatat aaatacgcac cccaaatcat       480
     gtacaattca gttcaaaaca agcatcgaag tcgaaaatac aatcttatat tcaaagtgaa       540
     taaacccagt tttttatcat ttcaaaccgt cggaatcgtc ataccgtacc gtatagtcgc       600
     gctagttcgg atcagtgtcg aaattgaaag tcaaagttcg tgaagaggtg accgttttta       660
     attaaccctt tactgcccag tgtcctaaat tcttcacccc gtgaaaatta gatcgctgcg       720
     aaaaca                                                                  726
//
ID   BEL-73_CQ-I repbase;    DNA;    INV; 5709 BP.
XX
AC   AAWU01004923;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_CQ_;
KW   BEL-73_CQ-LTR; BEL-73_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5709
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 291-291 (2011).
XX
DR   GenBank; AAWU01004923; Positions   14895   20603.
XX
CC   Positions [4737-5327] - Integrase core
CC   'TAGTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           336..5681
FT                 /product="BEL-73_CQ-I_1p"
FT                 /translation="MSTPFRNSKRTPRTPPLSPSPSPTPTLPKTPSTPQVK
FT                 SVAEQKSEKKKKEEKKKMEAQLKALVKQREAVRGKLLRVRAALRDSEEEPN
FT                 PNVRNVHFLQLQKRALENIYGECNEVQNKIYALPLSEDQDTVQTEKYVEFE
FT                 GVFNDVSLKLSTLIDVVPKAEPAAPAAGAPIQQPAQHYLPPLQVPLPKFDG
FT                 SYEKWYAFKALFTTLMNRYRQEEPALKLYHLRDCLVEKAAGIIDDEMINNN
FT                 DYDAAWALLTLRYEDKRIVVDKLVDKLYGLPKISQEDATELRKVIDTCTKN
FT                 VDALRNQELPVAGLGEQMLINLIVGKMEKKLQVAWEAKQKKNVLSTYAALM
FT                 AFLEEQCRISEKIDTKVKPAKESAKPKTAGRSHTLAVSESKNEQKCTVCKA
FT                 AHELWKCEAFKSKSVSEKYEILKKCGACFNCLMKGHRTRACSSGSCRHCGK
FT                 KHHSSLHEDSPSQVTNSAVPTTPASDVSQTVNTPAAGTSTTLCASAASSEK
FT                 QTVLSTAVVLVDGKCSTPIPCRVLLDSASQMNFVTERFANLLSLKLKPADF
FT                 TVSGLNGNKTRISRRLRATIRSRHGNFAAELDFLVTPRITGELPVKSFDAS
FT                 EWPISSELVLADPAFNKRGRVDMLIGAEYFWNLLLDGRYELGPDRPVLRNT
FT                 KLGWIAGGVIASDATVVARTLCQTSEEEPLIELLKSFYKVEACDEMCLEHF
FT                 QRTHERTEEGRYVVRHPFNERKRELGDSREMALRRFLALERKLDKQPELKE
FT                 QYSQFIREYEQLGHMRVIEEAPNEDPGSTFYLPHHCVLRPTSTTTKLRVVF
FT                 DGSAKTSTGVSINDVLRIGPTIQNDLTAILLRFRGFQFVFTLDIPKMFRQV
FT                 RVHPEDTRYQRIFWRYDRNDFLTVRELLTVTYGLGPSPFQATMALKQAAAD
FT                 HEDEFPRAAEVVDKGTYMDDVLTGADTLAEACELQREMTGLLAKACFGAHK
FT                 WCANHSDLLREVPEELRGNSFEVTDDSSKTIVKTLGVTWNPFEDWFSVSVP
FT                 DFDDLEEVTRRKLLSQLAKIFDPLGFFGPVITYAKLILREVGELHIEWDDP
FT                 VPTDIGEKWRSFRIELTALREVRLPRWISWKGALKLELHGYADASDPAYGA
FT                 CIYVKGFFANEETEMRLICSKSRILPKKRKPKEKAISTPRAELLAALLLAR
FT                 MVVKFLSATELKFESVHLWSDSQIVLAWLKKLPQLLQTFVSNRVSEIQKLT
FT                 QNFHWHYVATHENPADLISRGVTPKKLIKSKKWWQGRPRTTVAAAADEIVI
FT                 PDDELPEMRTGVVLAMTVPVERFPMFDKLSSFTGIVRSMAYLVRLARFVKS
FT                 RKTEVVKGRLTAKEMRTATLVIVRLVQREAFQPEILALMDGADTNHRLNGL
FT                 KAFLDPDDGLLRVGGRIKRAFVPYDSRHQMLLPAKHPITEALVRELHVDNL
FT                 HIGQRGLLAVVRQRFWPLNVKSTIRQVIRKCIVCFKANPLKTTQLMGDLPS
FT                 YRVQPAPVFSNTGVDYAGPFWIKSSSATRKPQITKAYVCLFVCLQTRAIHL
FT                 ELVSDLTTDAFLASLRRFASRRGCPKTMHSDTGPNFVGAKTELHELWQMFQ
FT                 NECATKKITSYCVEKGIEWSFIPPRSPHFGGIWEAGVKQVKHHLKRIVGER
FT                 KLSYEELYTTLTQIEAVLNSRPLVPSSDDPSDYTAITPAHFLIGREMQAVP
FT                 EPDYSHLKENRLSRWQLVQTMLQHFWRRWTAEYLPELQNRSKWLKTKVIKE
FT                 GSLVLLVDQNAPPLQWPLGRIVTAHPREDGVTRVVTVRMANGAEFKRAVTE
FT                 VCLLPLDEDED"
XX
SQ   Sequence 5709 BP; 1370 A; 1577 C; 1733 G; 1029 T; 0 other;
     ttggtcctta cggaaccgga tacgcgggaa accggtggaa tcgtcgtggt tctgtttttc        60
     gcgagaaaag tgccgattga aacatccgcg atcggatgtt agtgacgcgg aagtgcgcgt       120
     tgctgccgag gaaaaaagag tagcctcctc cggggaacgg cggatgtgac ccgggaagtg       180
     cgatcccgac ggaatttgcc agaaggcgtt ccgatttcgt gaagaaaagg tgaaaaagtt       240
     acttttccgg aagatttggt cggctttggt tggcgtgggt tggttttgca aatggcggac       300
     gggcagcagg aaaaagtgtg tgagtgaaat ggacgatgtc cacgccgttc cggaacagta       360
     agagaacacc gcgaacacca ccactgtctc cgtcgccgtc gccgacacca acactaccaa       420
     agactccgtc gacgccgcaa gtgaagtctg tggccgaaca aaagtcggaa aagaagaaga       480
     aagaagaaaa gaagaagatg gaagcgcaac tcaaggcgct agtgaaacag agagaggcag       540
     tgcgtggaaa gctgcttcgt gtgcgtgcgg ccttgagaga cagcgaggag gaaccgaacc       600
     cgaacgttcg aaacgttcac ttcctccagc tgcagaagcg ggctttggag aacatttacg       660
     gcgagtgcaa tgaggtgcag aacaaaatct acgcactgcc gctctctgaa gaccaagaca       720
     cagtgcaaac cgagaagtac gtggagttcg agggtgtctt caacgacgtg tcgctgaagt       780
     tgagcacgct gatcgatgtc gtgccgaagg cggaaccagc tgccccagcg gccggagcgc       840
     cgatccagca gccagcccag cactacctcc caccgctgca agtgcccttg cccaaattcg       900
     atgggtccta cgagaagtgg tacgcgttca aggcgctgtt caccactctg atgaaccgct       960
     accgacaaga agagcctgcc ctgaaactct accacctgcg ggactgcctc gtagagaaag      1020
     cagctggcat catcgacgac gagatgatca acaacaacga ttacgacgcc gcctgggcgc      1080
     tgctcacgtt gcgctacgag gacaagcgga tcgttgtgga caagctcgtg gacaaactct      1140
     acggtctacc gaagatcagc caggaggatg ctacggagct gcggaaggtg atcgacacct      1200
     gcacgaagaa cgttgatgcc ttgaggaacc aggaactacc ggtggctggg ctcggcgagc      1260
     agatgctgat caacctcatc gtgggcaaga tggagaagaa gctgcaggtg gcctgggagg      1320
     ccaagcagaa gaagaacgtg ctctcgacct acgctgcgtt gatggcgttc ctggaagagc      1380
     agtgtcgaat ctccgagaag atcgacacca aagtgaaacc agcgaaggag agtgcgaagc      1440
     cgaagacggc gggaagaagc cacacgctgg cagtgagtga atcgaaaaac gaacaaaagt      1500
     gtacagtgtg caaggccgct cacgaactgt ggaagtgcga agcctttaag agcaaaagtg      1560
     tcagtgaaaa gtacgagatc ctgaaaaagt gcggcgcctg cttcaattgc ttgatgaaag      1620
     gtcatcgaac ccgagcgtgt tcgtccggct cttgtcgcca ctgtggcaag aagcaccaca      1680
     gctcgctcca cgaggacagt cccagccagg tcacgaacag cgcagttcca acgacgccag      1740
     catccgatgt gtcccagacg gtcaacacac cagcagccgg aacgtcgaca accctgtgcg      1800
     cgagcgctgc gagctcggag aagcaaaccg tcctctcgac tgccgtggtt ctggttgacg      1860
     gcaagtgcag cactcccatc ccgtgccgtg tgctactcga ctccgcctcg cagatgaatt      1920
     ttgtgaccga acgcttcgcg aaccttctct ccctgaaact gaaacccgct gacttcactg      1980
     tcagtggtct gaacggcaac aaaacccgga ttagccgtcg actgcgcgcg accatcaggt      2040
     ctcgccacgg aaactttgct gctgaactgg acttcctggt gaccccacga atcactggtg      2100
     agcttccggt gaaatccttc gacgcctcgg agtggcccat ctcaagcgaa cttgtgctgg      2160
     cagacccggc gttcaacaaa cgaggacgcg tcgatatgct gatcggcgcc gaatactttt      2220
     ggaacctgct actagacggc cgatacgaac tcggccccga ccgaccagtg ctgaggaaca      2280
     ccaagctggg ttggattgcc ggaggtgtga ttgcgagcga tgcgacggtc gttgcgcgca      2340
     cactttgcca gacgtctgaa gaagagccgc tcatcgagct gttgaagagc ttctacaagg      2400
     tggaggcttg cgacgagatg tgtctggagc acttccagcg cacacacgaa cgaactgagg      2460
     aagggcgcta cgtggtacgt caccctttca acgaacgcaa gcgcgagctg ggagactcgc      2520
     gtgagatggc gctgcggcgt tttctggctc tggagcggaa actggacaag cagcccgaac      2580
     tgaaggagca gtactcgcag ttcatccgag agtacgagca actcggacac atgcgagtga      2640
     tcgaagaagc gccgaacgag gacccgggat cgacgttcta cctgccgcac cactgcgtgc      2700
     tgaggcccac gagtacgacc accaagctgc gggtcgtgtt cgatgggtcg gcgaagacgt      2760
     ccacgggcgt ctcgatcaac gacgttctga ggatcggccc aacaatccag aacgacctga      2820
     cggcgatcct gctccgattc agaggcttcc agttcgtctt cacgctggac atcccgaaga      2880
     tgttccgaca agtgcgcgtc catccggaag acacaaggta ccagcgaatc ttttggaggt      2940
     acgaccggaa cgattttctc accgttcgag agctgctcac ggtgacgtac ggattgggac      3000
     cctcgccgtt ccaagcaacc atggcgctga aacaagctgc agcagatcac gaagacgagt      3060
     tcccgagggc cgccgaggtg gtcgacaagg gaacgtacat ggacgacgta ctgacgggtg      3120
     ccgatacact tgctgaggcg tgcgaactcc aacgggagat gaccgggctc ctagcgaaag      3180
     cctgcttcgg cgcccacaag tggtgcgcga accactccga cctcttgcga gaggtccctg      3240
     aagagctgcg tggcaattcg ttcgaggtca ccgacgacag ctcgaagacg atcgtgaaaa      3300
     cgctgggcgt tacgtggaac ccgtttgagg actggttctc ggtgtcagtg cccgacttcg      3360
     acgacctgga agaagtgact cggaggaagc ttctgagtca gctggccaag atcttcgacc      3420
     cgctgggatt cttcgggcca gtcatcactt acgcgaagct gatcctgcga gaagttggcg      3480
     agctgcacat cgagtgggat gacccggtcc caacagacat cggcgagaag tggcggagct      3540
     tccgcatcga gttgaccgcg ctgagagaag tgcgactgcc gagatggatc tcctggaaag      3600
     gcgcgctcaa gctagaactg cacgggtacg cggacgcatc tgatccggcc tacggtgcgt      3660
     gcatctacgt gaagggcttc ttcgcgaacg aggagaccga gatgcgattg atctgcagca      3720
     agtctcgaat cctgcccaag aaacggaagc ccaaggagaa ggccatctcg accccccgag      3780
     ctgaactgct ggcggcactg ttgctcgcta gaatggtcgt gaagttcctg agcgccacgg      3840
     aactcaagtt cgaatcggtg cacctctgga gcgactcgca aatcgtcctg gcttggctca      3900
     agaaactccc gcagctgctg cagacgttcg tgtcgaatcg ggtaagcgaa atccaaaaac      3960
     tgacgcaaaa cttccactgg cattacgttg ctacgcacga aaacccggcc gacttgattt      4020
     cgcggggagt cacaccgaag aagctgatca agtccaagaa gtggtggcag ggccgaccac      4080
     gcacaaccgt agccgcggct gcggacgaaa tcgtgattcc ggatgacgag ctgccggaaa      4140
     tgcgaactgg agtagtgctg gccatgacag ttcctgtcga acgtttcccg atgtttgaca      4200
     agttgagcag tttcacgggg atcgtcagaa gcatggccta cttggtgcgc ttggcgaggt      4260
     tcgtcaagtc gcgcaaaacg gaggtggtga agggacgact caccgccaag gagatgcgca      4320
     cagcaacgct cgtgattgtg cggctggttc aacgcgaagc attccagcca gaaatcctcg      4380
     cactgatgga cggtgcggac acaaaccatc gactcaacgg gctgaaggcg ttcctagatc      4440
     ccgacgacgg ccttctgcga gttggtggcc ggatcaagcg ggcgttcgtg ccgtacgata      4500
     gccgtcacca gatgctgctg ccggctaagc acccgatcac cgaagcactc gttcgagaac      4560
     tgcacgtgga caacctgcac atcgggcaac gaggtctgct tgcggttgta cgacaacgat      4620
     tctggccgct caacgtgaag agtacgatcc gccaagtgat ccggaagtgc atcgtgtgct      4680
     tcaaagcgaa cccgttgaag acgacacagc tgatgggtga cctcccgtcg tatcgtgtcc      4740
     agccagctcc ggtcttctcg aacaccggtg tggactacgc cgggccattc tggatcaagt      4800
     cgtcgtcggc cacgcgcaag ccccagatca cgaaggctta cgtgtgcttg ttcgtgtgtc      4860
     tgcagacccg ggccattcac ttggagctgg tctcggacct gacgacggac gccttcctag      4920
     cgagcttgcg acgattcgcc agccgacgcg ggtgcccgaa aacgatgcac tccgacacgg      4980
     gacccaactt tgtcggggcc aaaacggagt tgcacgaact ttggcagatg ttccagaacg      5040
     agtgcgccac gaagaagatc accagctact gcgtcgagaa gggaatcgag tggtctttta      5100
     tcccaccgcg gagtccacac ttcggtggca tctgggaggc cggcgtgaag caggtcaagc      5160
     atcacctgaa gcggattgtc ggcgagcgaa agttgtccta cgaggaactc tacaccacgc      5220
     tgacccagat cgaagctgtt ttgaactcgc ggcccctagt gccgagctcg gacgacccgt      5280
     cggactacac cgcgatcacg ccagcgcact tcttgatcgg acgcgagatg caggccgtgc      5340
     cagaaccaga ctactcgcac ctcaaggaga accgactgtc gcgatggcag ctggtgcaga      5400
     ccatgctgca gcacttctgg aggcggtgga cagctgaata cctgccggag ctgcaaaacc      5460
     gatcgaagtg gctgaagacg aaggtcatca aggagggttc gctcgtgctg ctcgtggacc      5520
     agaacgcgcc acctctgcag tggcctcttg gacgaatcgt gaccgcgcac cccagagagg      5580
     acggcgtgac tcgcgtcgtt acggtgcgca tggcgaatgg agcggagttc aagcgtgcgg      5640
     tgaccgaggt gtgtttgctg ccgttggacg aggacgaaga ttgaaatacg atttcaacgc      5700
     gggggagga                                                              5709
//
ID   BEL-73_CQ-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   AAWU01004923;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_CQ_;
KW   BEL-73_CQ-I; BEL-73_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-249
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 292-292 (2011).
XX
DR   GenBank; AAWU01004923; Positions   14646   14894.
XX
SQ   Sequence 249 BP; 74 A; 76 C; 50 G; 49 T; 0 other;
     tgttgcgcta cttgcgcatc cctagcacga gaaacagcag cggcgttttt ggcacaccct        60
     gtacgaagcg cgcgcgcgac tccacacaca cactaacaca cgatctctgt aacgaaacac       120
     acgacaaaca cgaataaacc aacagtctca agtagtaacc ttagcaaacg gacgcgtttt       180
     tgcctttgct cccgaaatta ctgcttgacc gcgaaagcga tttatacagt ccactcatcc       240
     ggaggaaca                                                               249
//
ID   BEL-73_DTa-I repbase;    DNA;    INV; 5156 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   08-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5156
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 97% identity to
CC   each other.
XX
SQ   Sequence 5156 BP; 1292 A; 1213 C; 1243 G; 1408 T; 0 other;
     cttggatgtc cgggcgagat ctttaaattc gtttgtccaa aagatacagt gcacaaagaa        60
     gacaacaaaa caacagttac attaggctgg ttccgcttta agctggtcct aataaaatac       120
     cgtatgttat ataattgcat aaatatcggc atattttgca agggcttata tacatatagt       180
     gcggtggtat ttcgtttgat atcatagttc gttaatacac agtgcctcgc caactggtta       240
     ctgtactttc ttgccgttac aacaaaaaca aagacttctg aaactgtaaa ctcccgagtt       300
     gtgcagtgcg tttcggtttg ctttatataa tatacgcgca gatgaattcc gacgaaggca       360
     acacagtggc agatcataat agtatgtcgg ctgaaaataa agtgctgttt ttgaagtgca       420
     aggccgaatc ggtgtacaat agcttaaagc gcctggatat ttcgctagct aaagacgcga       480
     attgtctgtt cgggtccgcg gagttgacag ttcggctaga acttcttgaa catactcaag       540
     cctcattcag gcttgcccac aatgcgctgg aggagctaga ctattcggaa atcggcagtg       600
     agcttagcga caattttgaa atgctcatgg taacggtcaa gtcacggcta agactgcaac       660
     ttgaaaacag tcagcttgga atgccaacat cttccactat gcgccttgat cccagcctgg       720
     atcagtcaac tgtcatggtt gatcgagggc ataggactcg cctgcccgaa gtaaaactgc       780
     ctacattctc cagtggatac accgaatact ctgacttcct ctccatgttt acctcggtga       840
     tagataagga cccctacttg gctggagtcg gttcgatcac tagaaatatg tggtgccaat       900
     tatcgtgcgg cactagaaat cttaaataag cgctttaata ataaacgtct tgttttccag       960
     gcacacatca atgaaattct tgggctcaag aggctcgagt ctgcgtcagc tttggcattg      1020
     cgggactttt cggacaaaat tattgggcat atgcgagcgc ttaaggcctt gggagattta      1080
     aaacaaatct caggctgcat ggttgtatac atgattgtgc aaaagttgga tgcagcaacc      1140
     caagctaact gggaagaaag tttgtcaacg gataggattc caagcgagga ggatttgctc      1200
     tcgtaccttg aagggcgatg ccagaaactg gagagcgttc agcatgcctt ggcttctaac      1260
     atggcccatg accataccgc tccaaggcct gccagaaggg cgttacttgg tgcccaggtc      1320
     agccagagta gctgcgtctt ttgtgatact cctggtcatg gaatatactc ctgtggctcc      1380
     ttctccgatc tgtctcctag tctacggcaa gggagagtaa aaagactttc attgtgtttc      1440
     aattgcctaa agaaggggca ccacactcga acgtgcaact ccggctattg ccgcacatgc      1500
     ggtggaaaac accacacgct gctccatcta cgccctgatg attcaccgtt gcaagttcct      1560
     gctcctgatc tgaaggatct acagtcaaca tctccctcca gtcgcgttct tctgaatact      1620
     ctgttgctct aacggcgctt gttgtgccaa cgattacgga cagtcagcct agttacaatt      1680
     gacatcgctg attggaataa catacagttg gcggaccctg cattcaactg tccccagcgc      1740
     gttgacatgc tacttggtgc tggcctattt tatgacctgt tatgcgtggg ccaaattaag      1800
     ctggttcatg ggttgcttct actgcagaag actcgccttg gctggatcgt gactggtggt      1860
     ggagataggc ttcgcggcaa tacatctctt ttggcatctc aaggcttgga aaatggagct      1920
     acactacata atgtccgctt ggaggatctg gttaggcgat tttgggaagt cgaaaatctc      1980
     gacagtggaa tcataatggc cagcaaggaa gagctggagt gtgaggatca ttttatcaaa      2040
     aacttctatc gtcttccctc tggcgcttac tccgttcgtt tgccgttgaa gcaacatgct      2100
     aaagcccttg gcgattccta cacacaggca caccggagat ttcttaacct tgaacgcaag      2160
     ctgcaaagga atccccattt aaagcgtcaa tatgtggcct ttattaagga atacttggag      2220
     ttaaaccaca tgtcccgagt cagccccgag gctgtggtcc tttgcaagta tttcctgccg      2280
     caccattgtg ttctaaagga ggatagcaca acagccaagc ttcgcgttgt tttcgatgga      2340
     tcggctttag cctcctccgg gtcgtctctt aatgatgtcc taatggccgg gcccgttata      2400
     cagccaaggc tgtttaacat tttgataaaa tttcgtactt atcaggtggc tctgactgga      2460
     gacatttgca agatgtttcg gtgcgtaagg ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa      2520
     aaaaaagaag tcgaagttaa atggtagtga cctacggaac caagcctgcc tcgttccttt      2580
     ctgttcgagc aatgcaccag ctggccattg atgagaggga ttccttccct gctggctcag      2640
     ttgctctgca acaagatttc tatgtcgatg atttcatctc cggtggtagc tctgttggtg      2700
     aggcgatcga gaaaatgcga cagaccactg agatactagc tcgaggtgac ttcaagttac      2760
     gaaagtggtg caccagccac cccgaggttt tgaaggatgt gtcagatgat gacaaggaga      2820
     agtatttgaa gttcggcgat ggcagcgata taaccaaaac tcttggtctt gcatgggatc      2880
     cggcaacaga cgagctgctg ttccaaggcc tgccgacgat ctgttctggc caccattgct      2940
     cgtttctatg acccgctagg ccttcttggc ccagtaatca caaaggccaa ggtgtttctt      3000
     caacaactct gcaaggacaa attggattgg gatgaaagtt tgcccttggc ccgtaacacc      3060
     tgctggatcg aaatgtgcat cagttttcaa agcgtccaac gcatatcatt cccaagattt      3120
     ttgcttcctt cagaaactga tgttgaaatt catggtttct gcgatgccag cgaggaagct      3180
     tacggagctt gcgtatatgt gctgtctagg ggcacttctc cagccagcag ccatctctta      3240
     tgttccaaat cccgagtagc gcctctcaaa acgttatctg tacctaagct ggagttatgt      3300
     ggcgcccggc tattagccaa gctaatgaat gaagttatta aaatgggtat gttcaatggt      3360
     ccttttcact gctggtgtga ttcctctgtg gcgctatcct ggatcggtaa tgagcctttc      3420
     aaattcaacg tcttcgtggc aaaccgagtg gcttctatac aggaattgac tgctaacatg      3480
     gaatggcatc atattccgac tgcactcaat cctgccgacg ttttgtccag gggctccact      3540
     ccgaatctac tggcgctttc taagatatgg tttcatggcc caccattctt acttggtggt      3600
     cgcaaggatt tgcctacgcg tctgcattat gacgatccga gccttgagtt acgtaaacag      3660
     gtgctgatgg tcaagtctcc tcacgttgat gttacccttg gatccaagta tggcaactcg      3720
     ttcccttcca tgcagcgcgt gttcgtggtc tcgaggtatc tgatgtgcaa cgtgggacat      3780
     atatgctctg gcgaggtgtc caactggctc atttatggga gggtataaag gagcttcgtt      3840
     caaatggcat tgttaagaaa tcaagttcaa ttgcttcgct cttgcccttc atagatgcat      3900
     gtggccttct tcgagttggt ggacgcctcg aaaattcaac acttgcgtat gaggctcgcc      3960
     atccaataat agtgccacgt cgtcaccaac tcaccttagc gctcatcatg cacttccata      4020
     agatgaacct gcatgcagga ccgcgtgctc tgttggcaag catccggcta caatactggc      4080
     ctattggagg actgcgaact gtctccaatg tcgtgaaagg ctagtcgtgg agtgcttccg      4140
     ggccaggccc aaatttctgg aaccaatcat ggctaatctt ccgaaggaac gtttggagtg      4200
     cgtacgggcc tttgcagttt ctggcgtcga ctattgtgga cctttcttcc acaaatcaga      4260
     agttcgcacc aggtctccca tcaagtgcta cgtatgcgtg ttcatctgct ttacaagcaa      4320
     ggctgtgcac ttagagcttg tcaaggatct aacaactgct tcgtttttaa gtgctttgaa      4380
     aagattcatt tctacacgtg gaaagcctag tcaaatttgg tcggacaatg ctaccaactt      4440
     tgtaggagca aaaaatgagt tggcggattt gaagcagctg ctgcttagcg attcccatat      4500
     gcagtctgtt catcaagctt gcttggcgga gggaatcgac tggcaattta ttccgcctcg      4560
     cttaccacac tttggcggat tgtgggaggc atcagtcaag acggccaaac accatttcta      4620
     ccgctctgtt ggccgccaaa cgcttagttt tgatgagctt cgcactttgg tttgtcagat      4680
     tgcgtcaatc attaactctc gccccttgct atccatttca gagaatccag atgatctcga      4740
     tgttttgact cctgcccacc tactttttgg tggcccttct actactatca ttgagcccga      4800
     tctaaccaag ctcaattata accgcttgga tggctggcag cgtgtaacat atctgcagca      4860
     actattttgg tcccgatggg agaaggagta ccttactctt ctgcaacaac gcaccaaatg      4920
     gcggtctcct gaacgaatgc tgaaggtcaa cgacgtagtt ctgataaagg atgaaaatct      4980
     acctcccatg aggtggccct tagctagggt gagcgcactt attcctggac gagatggcgt      5040
     ttgccgaggt gctgatctga agacgtccac gtgagacatc aggagagctg tcaataagtt      5100
     gtgcctgctg cccatcaatg atgaagttga aagacaggct tccaacgggg ggagta          5156
//
ID   BEL-73_DTa-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.10, Created)
DT   08-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-73_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-296
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 97% identical to the other LTR.
XX
SQ   Sequence 296 BP; 81 A; 72 C; 58 G; 85 T; 0 other;
     tgttgagcgc agcggcaaac cactccaact aaagagagag tcagaatcac tcatttctaa        60
     gcggctcctc ttatctctct attaattgga cttgtcagtc tgagcccgcc tctcaacgcc       120
     tacggtccgt cgccagcgca tacatttcat tgttgttgta gattgcaagc tgcggtgttc       180
     gcaaagcccg tagcccttgc acattcataa agctaataaa ctgaagtatt gaaatgaatt       240
     tatctcgcct tgtgatttat ttaaaatagc tgacaaaaag gcttgttagc tcaaca           296
//
ID   BEL-740_AA-I repbase;    DNA;    INV; 7336 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-740_;
KW   BEL-740_AA-I; BEL-740_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7336
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7336
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 587-587 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 7336 BP; 1874 A; 1846 C; 1898 G; 1714 T; 4 other;
     taattggtcc ttcgagccgg atcaatcgcg gtgtcggaca gttgcgcgta gtttagaagt        60
     gtttcgcggt tgagaaaagg acgctagtgc cggacaaaag cgccttagtg aagtgaaatt       120
     tcgccatcac gataagtgat tttgtggcgc gcggtttttg tgtattaacc cgccattgga       180
     agtgaagaaa gtggatggtg atttttgcag ctgttgggag aggacaacgg agacgatttt       240
     tgcgtggcgt ttggtgcggc caccttggga cggacacggc gatcagagga cacacagtga       300
     ccacggacaa gctgcaattc agggaagtac agtgcatgtg tgggtctgtg gctttctatg       360
     catgaagatt gccattagac tgtgggtaaa gagattgcgc tgtgattgat aataaaacga       420
     tcaatttgca tgcgaaattg tgttttttga ttcacgakac ttggtccctg tggtttgttc       480
     gttgctagtt ggtcttggat tccgctggta cccggttggc tcgattttcg ttggttgtat       540
     tccccttcgc tgttgtcatt gggtcggtca gttcgtctcg cggcgcgtgg aacgtggagt       600
     cgattcgttg tcaccagtgc acagtggtcc agagaggtga attttctcgc agcagctcag       660
     tgatttagtg agtagtgcag tgtattgtaa acagtgcaaa cgaacttcct gtgcgataac       720
     ttttcacagt gactttggtg agacttgcta gtgcaataga acagtgacaa tgaaacccga       780
     agacttgaga agtttgttga agcgggagaa acgccttcaa aatagtttag aactggtgga       840
     gaagttcatt agtgacttta atgaagagcg tgataaaagg gaagttgaag ttcgtttgca       900
     gctgcttgaa agtgttgtga ccgaattctt tgaagtgcgc gataagattg aagtgctgat       960
     ggatgaagta gctgaagacg aagttccaga tccggatgaa tccgagaagg ctcgtaaggc      1020
     aaggctggcg aatgcatcga aagagaggga ggaagaaggt ttagccatcg ccaatgatgt      1080
     gcagaaccgt tactgcaagg ccaaagcagc attaatggaa cggcgtccga agaaagtttt      1140
     ggatcatcct gggacgtcga gcatggctgg aactacgttc tcgaaggtga agctgccgga      1200
     gattaagcta ccaacgttcg gcggaagact tcgagactgg gtatcgtatc gagatgcatt      1260
     tcgaagcttg atccatcaaa accgggaact caccgacatg gacaggttta cctaccttcg      1320
     ttcatcgttg accggagagg cacttcagga agtcagctcc attgaacttt ccgccgccaa      1380
     ttatgtagtt gcctgggctg cattggaaga tcgctaccac aacgaaaagc tgatcgtgaa      1440
     ggcttatctc gatgccatct tcggcataga accgatgcgg aaggagagct acgaagcgct      1500
     gagccagcta atcagcgact ttgagaagaa tctccagatg ctgcagaagc tgggacagga      1560
     caccaatggc tggagcacta tcctagtgca tatggtttgc tcgaagcttg atggcgtcac      1620
     cctacgattt tgggagtcgt cacacaactc caaggaagtg cccacctacc gaaacctgat      1680
     gaacttcctg aagaatcatt gtgcggttct tcaatcagtt gatgcgagca aaccctcccc      1740
     cgtcgaagcg aagaagccca agataagcgt cagcaactca tcaacatcct ttggtcggtg      1800
     ctgcttctgt tcggaagcat tccattcggc gttcatgtgc aacaagttcc agaagtggaa      1860
     gatctcggaa cgctacgacg cagtacggaa gaacggcctg tgcatgaact gtctatcgtc      1920
     aggtcacttg gcgcggaact gcagcaaagg atcatgccgt cagtgtggga agaggcacca      1980
     tactatgctt cacgcggact acagtgtcaa cccgaaatcc tccgttccac agacgacaaa      2040
     aagaccccca agtgaacagc aacatcagac acagcaagca cagccgaatc caccaacaca      2100
     ccagaaagca ccaaccacaa accacaccga acccagcact tcattgtcaa tcgtacaaac      2160
     acaatcgcat agcaccaacc cacagatcgc cacagaccaa tcaaacacac agcaacacac      2220
     tgtagcgctt ccaacacaaa caaacccttc cacacgtcaa gtcctattat caaccgccat      2280
     agtgcgggtt tgcgatgcca acggctgctc aatgctggcc agagcactgc tagactcgtg      2340
     ctcgcagtat tgtttcgtta cctccgattt ttgccgacgc atggacctga gcgaattccc      2400
     tgactatctc gctgtgaagg gaatcggtgg ttcaggaagc gtttcccaga aagctgtctg      2460
     cgctacagtt tgccctcgtt tcgccagtat ttcggatttc gaggaagtta tgcgattcaa      2520
     cgttttgtca aggctaacga ttccgctccc gtgtgaaggg ttcgatactt gccagtggaa      2580
     cttgccggac aacgttgtac tagctgaccc cgagttctac aagacttcgg acatcgatat      2640
     gatcatcggt gccgagtatt acttggatct gttgcaagat gggcgattta gactcgacga      2700
     agatggtccg acgttccaaa acactgtgtt tggatggatc gtttccggtc gcatttccaa      2760
     cagtgcgatc tccgcaggtt caccatctgc gtcattgtgt tccatgtcgg aaatccaaga      2820
     gcaactttct cggttctggg agctagagag ctgtcatcta gcgagcatct attccgtgga      2880
     agagtccaca tgcgaggagt tcttcaagca aacgaccgtt cgagatgacg acggacgctt      2940
     cgtcgtttct ctgcccaaga aagagcacat tatcgggcac ctgggagatt ctcgatgcat      3000
     agcggagcgt cgattcatga gcttagagag gcggttcgct acaaatccag agctgaagag      3060
     gttgtattgc gagttcatgg aggaatacgc ggcgatgggc cacatgaaga aggtaaacga      3120
     ggaggaactg tcagggtcag tgaattactt tctaccgcac catgctgtat tgaagccgga      3180
     tagcacaaca accaaactgc gcgttgtatt tgatgcttcg tgcaagacta cgtccggtgc      3240
     ttcgcttaac gatggactga tggtaggtcc cgtagtccaa gacgacttga tttcgataca      3300
     tgctcgtttc cgcttacacc ggatcggtat cgtagccgac gtagcgaaaa tgtacaggat      3360
     gatcaacatg tgtccacctg atcagaagct acaactgatt ttgtggagag ccacgccaga      3420
     tgaagcaatc gaggtattcc agctgacgac cgttacgtac ggtaccgcat ccgctccgtt      3480
     tctcgctaca cgttgcttgg tacagctagc agaagacgga gaatccacgc atccagtcgc      3540
     agcgaaggta gttcggaaag acttttacgt cgatgacatg atcaccggcg tcgacagccc      3600
     agaggaaggc aaggagctag ttgaggaaat ggtcaagctt accgattctg ctggaatgac      3660
     gctgcgaaaa tggaattcga attgcggaga agtcctgagc gagctacaat cgcatctgcg      3720
     agacgatcgg gtcctctacg aaatggattc accgccgcta acagctaccg taaagacact      3780
     gggccttgta tggtgtccgt cgtccgataa tttctatttc acgctgccca agtggaattc      3840
     agcgtcggtg attactaaac gaattgtggt ttccgatgcg tccaaactct ttgatccctt      3900
     gggactgata ggaccggtaa tcgtcgaagc caaaatcttc atccagactt tgtggaagct      3960
     gaatgcgaat tgggatgatc cgctcccgga gaacctgcaa actttctggt tggagtatcg      4020
     taggaacctc agcgccctag agtccatcag tattcctcga tgggtcggat ataccaagga      4080
     gtgtgtctcg accgaatggc atggattttg cgacgcttcc gatagcgcat acggcgcttg      4140
     cctatacctt cgatgtacct acgctgacgg ttctgtgcga attcagctga tgatgtcgaa      4200
     atcacgagtt gcgccactgg aagatctgaa gaagaagaaa cgtaagcagt cgacgccccg      4260
     actagagctt tcatccgccc tccttctgag ccatctctat gagaagacaa gcaaagcgac      4320
     cgcgttggct atcccgtcgt atttctggac cgattccaac atcgtgaagt tctggattgc      4380
     gtcaacaccg tcccgatggc agactttcgt cgcgaacaga gtgtccgaga tccaacacct      4440
     gaccaaaggt ggaacctgga atcatgtcgc agggatagaa aatccagctg atgtgctttc      4500
     gcgaggtata tcagcaacac agcttgaata ccactctttg tggttcagtg ggccagtttg      4560
     gttgcgtcaa agtcgagagt tctggcctga gaattcagaa gtcgccgcag agcagcttga      4620
     tccagcttcc ctcgaagaaa gaaagtccgt tgccttaccg ctgcaagtcg caactccgag      4680
     tgaaatcttc tcgcttcgtt cctcgctgtt ttcatcagtt cgactcgtag cgttgattcg      4740
     tcgctttcgc cacaactccc agagagccaa ccggaataca aggaagttcg gttgcatcag      4800
     cacgcaagaa tacgaagacg cccttttgca gttagtccgc ctgtcgcaac aagaatgttt      4860
     cccgcaggag atagcaagtc tgtcccggga ggatcaggtg aaagaatcct cgagaatatc      4920
     tccgctgaat ccaaatctcc gagacggcat actgcgcgtt ggcggccggc tccggaacgc      4980
     agccgtttcc gaaaatcgga aacatccgat gatactcgat caccgtcatc ccctcgccac      5040
     gttggtagtc cgccattacc atctgaagat gctccactcc ggacaacaag tcgtcatcgc      5100
     aagcaccaga gaaaggttct ggattccgaa catccgtaac ctcgtacgaa aggtgttaca      5160
     tgagtgcgtc acctgcttcc ggatcaagcc cagatgtcaa gaacagctga tggcagagct      5220
     gccaccggaa agagtgaatc cggcaccacc atttctcaag gtcggtgtag attattgcgg      5280
     cccgttcctg gtgtcctatc cgcagcgccg tagtggtccc gttaaatgct tcgtagcaat      5340
     attcgtttgc ctcgttacca aggccgttca tgtcgagtta gtcgccgatc tcaccacagc      5400
     ggcattcctg gcggcattac gacgattcac tgcccgtcga ggtcgtccag ccgtgatcat      5460
     gtgcgacaat gccaagaatt tcgtaggagc aaagagggaa cttcgacagc tgttgaattt      5520
     gttcgagcag caacagttcc agaatgctgt agccagcaac gccgcagatg aagggattga      5580
     atttaagttc atcccggcca gatcgcccaa tttcggtggt ctatgggaag ctgccgtgaa      5640
     atgcttcaaa aacagcttca agaagatcgt cggtagtcgg acgctgctgt atgatgaaat      5700
     gcagacagtg cttccgcaaa tcgaagctgt gttaaactcc aggcctctca ctccactaag      5760
     caacgatcct ggagacttcg aagcactcac gcccggacat tttcttgttc aacgtccact      5820
     gacagcgatt gctgaacccg atctggagaa tgttccagct aaccgcctaa ccgtctggca      5880
     aaggtctcag gactacagcc agaagctctg gaagaagtgg agcacacttt acctgtccga      5940
     tttgcacaac cggacaaaat ggacacgaca acgagacaac atcaccgtcg gaaccatggt      6000
     tctgttgatg gacgagcggc taccgccgct gaagtggaac ctaggtcgag tcaccgaagt      6060
     attccgaggc tctgacgata acatccgcgt ggtagacgta cgcactgcga atggggtttt      6120
     ccgaagagcg atatcgaaga tttgcgtcct tccgataagg gataacgcaa catctaccag      6180
     cgatgaggca taattcgcct ccaccggggg tgcttcggca cccgcggagg tccatagggc      6240
     ctccgcattc cagtaagttt tgttttttat cagtatttca aaaagcttaa ggaattttca      6300
     taccccatag tcgtcgtgct acccgtcccg ggtctccggg acagcgtatc gtttggagcc      6360
     aaccttgatc ttccatccaa gaccctgtcc ataagtcatc gttccgaggt ataatcgtcc      6420
     gttggtgaag gtggttgtga gcgtccagtc cagtcaagaa gtcctgtcaa tccgtgtgaa      6480
     gcaacccgtt tgtttccgag tccatcggat acgttacgtt gcgaaactaa tccgttccat      6540
     ctcgccgagg tacaacctgc aacaatccgc tggtttagca agctgtagcg tcagtcggag      6600
     tttggccaac tctatgaccg tcactgtagc cgcccgatca gcccaagaag cggtaagagc      6660
     tcaccgcaac cgtttggttt catccttggc aaccgatttg gtcagtatcg caccgtatgt      6720
     catccgtttc gacaccgtca tcgccgctgg tagcggtcgc ggaggccacg agggcctccg      6780
     ctccaggcaa gttgttgtat tgtacataaa tccaagtgaa aaagcaccct ctcatttgca      6840
     gcaacgaacg aagcccttcc ccgtcgtcga ggacgacagc aaggcaacgg acaaccgcag      6900
     gacgaccgaa taccaccccg aagatgtccc cttagcgatc gatggtatct cgctcggagt      6960
     atcgtcatcg ccatccaaga gaggaatcga ccacagcccc gtagaagtac cggaatggca      7020
     caccgccgtt tgtttctcgt cagcaatcaa gtcgcagacg cacctgaaga tcagatcccg      7080
     caagaagcaa ccaccaaccc cttcgcgatg tgcccagaag ccgtcgtatt cgtcacgaag      7140
     cagcaccatc acccacgagc cgttttgagt acggcattcc agcagtaatc gtatcgtcac      7200
     caggaagaat tatatcatga agaattgtca agtgaattas agatgtcgaa ckaatggatt      7260
     cgktagaaga ttaggaacca attgaattag aataacaaat tagttgaaat ccgtaggttt      7320
     caaggcggcc ggcgta                                                      7336
//
ID   BEL-740_AA-LTR repbase;    DNA;    INV; 394 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-740_AA-I;
KW   BEL-740_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-394
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-394
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 593-593 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 394 BP; 102 A; 98 C; 84 G; 110 T; 0 other;
     tgattgcgcc aaacatttta gaatattaaa ttatgttgcg agagccaccc tactgggtgg        60
     tcactcaccg ccagaacagc acacaatcga acgcaatgcc ttaccgcaca ctattgcctc       120
     tgtacggtat atgtaatagg cctttaggta ccgatcgcct cccgatcgtg tgttgtgatc       180
     ttaccacttc tagccagtag aacagctgag caagttagta ttaaataaac cttcgccgcg       240
     ttcggtcgga acccgcttgt gctttgattc ccaaataaag tgtgttgttt acttaccgcg       300
     aaattagtag tgattattag tgaaaatatc accgcgcgag tccccgtcga taccgggttg       360
     attatacgaa cccttcgctc tatgtgcgtg aaca                                   394
//
ID   BEL-741_AA-I repbase;    DNA;    INV; 6460 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-741_;
KW   BEL-741_AA-I; BEL-741_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6460
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6460
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 617-617 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           586..5994
FT                 /product="BEL-741_AA-I_1p"
FT                 /translation="MSPNMRTLSRQERFYLDTMTNLRHFMEHFDAERDRGQ
FT                 LEGWKQRAEALYNDFQANRLKIEVYGDDAEQTETDEEGVRLAEEANRLIRQ
FT                 GFENDYVRVHSFLTREIRKLTTEIQSVVPTTSRNPVNASDNFYSRIKLPEV
FT                 TLPKFSGLVSEWIHFRDTFKSLIDSNPQLSPIDKLSYLVGSLSNDAKKVIE
FT                 SVEHTAANYQVAWNILERRFDNKKLVVKTYIDALFAIDPMKRECYESLMHL
FT                 VDDFERNLCMIDKMGIQTNGWSVLLAHMVCSRLDPSTLKQWETHHQSTDVP
FT                 KYEDLMRFLRTHLTVLQSLTPLKSRSNDPPKPEPFRSQKPKINTVHTITTT
FT                 NSSSSSCPFCSKPSHSPFKCELFQKLSVAQRFEQVKKKNLCINCFSSSHLL
FT                 RNCSSGACRVCSQKHHTMLHQSSQDRSLTPSKPPTSAVGSKSSLSSQGNES
FT                 SPSNQPSHSRSPSTAESQSPSANASTLISTTLVGSSRSVPATVLLQTAVIK
FT                 ILDNQGYPHSARALLDPASQLSLITENLAQKLRLQRYSNRQEIGGVGNSLI
FT                 VSYQAVLVRMGSRCSDFVADAQCHILKKITRELPVRCIDTSPWNIPSNLVL
FT                 ADPQFHEPGPIDLLIGMEMYYDLLLEGFIKLGPEKPILQNTVFGWVASGKV
FT                 GTNQTPEFTPKLAHVTSAESIDEQLSRFWEIESCWTNSTHSVEETACEKHF
FT                 ADNVFRDQSGRFVVTLPKRPSVLSQLGNSKEIAKRRFLALERRLQANPKLM
FT                 EAYSAFINEYHQLNHMREVNDEDSPMNCPSYYLPHHGVEKAESTTTKLRVV
FT                 FDASCRTDSGISLNQALMVGPVVQDDLLALILRFRMKRFVITADIEKMFRQ
FT                 IRIHPSDYPLQRILWRSSPTQPLRTFELTTVTYGTASAPYLATKCLQQLSK
FT                 DGADNFPLASATLAEDFYMDDMLTGVDDEQEGEELCQELLQLMQSAGLSLR
FT                 KWSSNSPTILSKIPAELRDERTSFSLDSPSAPIKTLGLQWQPMDDLFRYSV
FT                 PKWSQEGSITRRTVLSDTARLYDPLGLIGPVVLLAKLFVQTLWRTSRSWDD
FT                 PLDESEQRHWLEFRSNLDGLASISIPRWAAPVSTLASIEVHGFCDASEKAY
FT                 GACIYWRTVSTDGTIAVRLLTAKSKVAPLGDSKKQKRICLPRLELSSALLL
FT                 SHLYHKVQTSTKLKVKAIFWSDSMITLHWLRSTPSRWKTFIANRVSEVQHL
FT                 TAGGIWAHVPGIENPADIISRGMDPAQLQETESWWNGPPWLSQPSRFWPLL
FT                 TPQXSVDLPPELLEERTVSLPVQVVPPSEVFSIRSSFPALVRTVALLRRFG
FT                 HNSKPHNRSDRRYGFLQTSELAEATNTLVQLAQHEAFAKDIAAVAXNGQVE
FT                 PNSVLRNLTPILVDGILRIRGRLRHAAISDDRKHPIILPARHPLTTAIVTY
FT                 YHLKNLHAGPQLLSACVREKYWPLRLRDLARSVVHSCVSCFRCRPRNLEQI
FT                 MGDLPPERVTPTLPFLNTGVDLCGPFYYRKIRKAPPIKCFVAIFVCLVTKA
FT                 VHVELVYDLSTAAFLTALHRFIARRGKPNLIECDNATNFRGTAGELKELAK
FT                 QFRSQQHQGEVVNHCADEGITFKFIPPRSPNFGGLWEAAVKSFKQHFRRTI
FT                 GNSILSQDELITLLTRIEACLNSRPLTPLTADPNDLEVLTPGHFLVHRPLT
FT                 SFPEPDLSNVPQNRLDRYQNNQELLRRVWKRWATDYLSGLHPRTKWTRVRD
FT                 NIVVGTMVLLKEDDLPPLKWKYGRVINIIRGDDGNIRVVDVRTADGEYRRA
FT                 ITKICVLPIRQPTTEPAGAAGPNPDESSIAVL"
XX
SQ   Sequence 6460 BP; 1590 A; 1806 C; 1539 G; 1518 T; 7 other;
     ttttggtcct ggtcgagccg gatcaaccgt ttagtgaccg aaaaaacggt gaagattcgg        60
     acagttcgtt tcgcggtttg gtgtagtgtc gaagagtgaa cattcgccgc acgtcacgtg       120
     acgttgcaca gtgactatct gcaagttaac twgcgaagaa tttctgcccc taacgcggca       180
     aacagtgcgc gaaagatcga aagkaattaa cttcgatctc gttagtgccg atcgaaaatt       240
     gattgccgtt ctcgaggtgc gacggcccat gtgcacatag cgtggtttcc attgagcgag       300
     aaaggcacgc tggcttggct tgggtctgca ttgtgtggtt gcgacaatag gacgtcggtc       360
     gaaggcacca gggctggtcg cgaactgtga gtatattcca tggtggttgg attgattttt       420
     atcgttgcga aaaattgaaa ttggcttcga ttgcttccat cccgggtgag cttgttggct       480
     ggtwgcttgg tgctctgggt ttcaaattgg tcggttattt tgtgagcgta ggtgaggagt       540
     tgagtcgatt gattgatatc gtcgtctatc gctggggtgt ggaaaatgtc gccgaacatg       600
     aggacacttt cccgccaaga gcggttctat ctggacacca tgaccaattt gaggcatttt       660
     atggaacatt tcgatgctga gcgcgataga ggacagcttg agggatggaa gcaacgagca       720
     gaggccttgt acaatgattt tcaggccaat cgtttaaaaa ttgaagtgta cggtgacgat       780
     gccgagcaga ccgagacaga cgaagagggt gttagactcg cagaagaggc taaccgtctt       840
     attcgacagg ggttcgaaaa cgattacgta cgggtccata gttttctcac aagagaaatt       900
     cgtaaattaa ccacggaaat acaatcagtt gtccctacca cctctagaaa tcccgttaac       960
     gcttccgata atttttattc tcgcataaag ctcccagaag tgacactccc taaattttct      1020
     gggctagttt cggaatggat acacttccgc gacaccttta aatccctcat tgactcaaac      1080
     ccccaattgt cgcctatcga caagctgtcg tatctcgttg gttccctgtc caacgatgcg      1140
     aagaaggtga ttgaatccgt cgagcacacc gctgcgaatt atcaagtcgc ttggaatatt      1200
     ttggaaaggc ggttcgacaa taagaaatta gttgtaaaaa cttacatcga tgccctgttc      1260
     gcgatagacc ctatgaagag agagtgctac gagtctctta tgcatttggt ggacgatttc      1320
     gaaaggaacc tgtgtatgat tgacaagatg ggcattcaaa caaatggatg gagtgtgttg      1380
     ctggcacaca tggtttgtag tcgtctggat ccatccaccc tgaagcaatg ggaaacccat      1440
     catcaatcaa cagacgttcc caaatacgaa gatctgatgc gatttcttcg tactcacctc      1500
     acggtgctcc aatcgctgac accgctgaaa tcccgctcga acgatccccc taaaccagaa      1560
     ccgttccggt cacagaaacc aaaaataaat acagtccaca caattaccac taccaattcc      1620
     tcgtccagtt cctgcccgtt ttgttcgaaa ccgtctcact ctcccttcaa atgtgagttg      1680
     ttccagaagt tgtccgtcgc ccaacggttc gagcaggtga agaagaagaa cctctgcata      1740
     aactgcttct cctcctccca cctacttaga aattgctcct ccggtgcttg cagagtatgt      1800
     agccagaagc accacaccat gctccaccaa tcctcgcaag atcgctcgct caccccctca      1860
     aaaccaccca cttctgctgt cggttcgaaa tcttcgttat cgtcgcaggg caatgaatcc      1920
     agcccatcga accaaccctc acattctcga tccccgtcaa cagcagaatc ccagtcgcca      1980
     tcagccaatg cctctactct catttccacc actctcgttg gaagttcccg aagtgttcct      2040
     gctaccgtac tgctacagac tgcagtaatc aagatcctcg acaaccaggg gtaccctcac      2100
     tcggcccgcg ctctgctgga tcccgcttct caactgagct tgattacgga aaacctcgcc      2160
     caaaaactac gattgcagcg ctactcaaat cgtcaagaga tcggaggtgt gggaaattct      2220
     ctcatcgttt cgtatcaagc tgttctcgtt cgaatgggtt ctcgttgctc kgatttcgtc      2280
     gcagatgctc agtgtcacat cctcaagaaa atcactcggg agctgccagt cagatgcatc      2340
     gacacttctc cgtggaatat cccatcgaat cttgtcttag cagatccaca gttccatgaa      2400
     cctggaccca tcgatctcct aattggtatg gagatgtatt atgatctgct gcttgaaggt      2460
     ttcatcaaac ttggccctga gaaaccgatt ctgcagaaca ccgtcttcgg ttgggtggct      2520
     tctgggaagg tcgggaccaa tcaaacaccc gaattcactc cgaagcttgc tcatgtcacc      2580
     agtgcagaat caatcgacga acaattgtct cgtttttggg aaatagaatc ctgctggaca      2640
     aacagtactc attcggtcga ggaaactgcc tgtgaaaagc acttcgccga caacgtcttt      2700
     cgcgatcagt ccggtcgctt cgtagtcacg cttcccaaac gtccgtcagt ccttagtcag      2760
     ttggggaact ccaaagaaat tgccaaacga agatttcttg ccctcgaacg tcgtctgcaa      2820
     gcaaacccca agctaatgga agcatactcg gctttcatca acgaatatca tcagctgaac      2880
     cacatgcgag aagtcaatga tgaggattcc ccaatgaatt gtccatccta ctatctaccc      2940
     catcacggcg ttgagaaggc cgaaagcacc accacaaaac tccgcgtagt ttttgacgct      3000
     tcttgccgaa cggatagcgg aatctccctg aaccaagcgc tgatggtagg tccagtcgtt      3060
     caagacgacc tgttggcact cattcttcgg tttcggatga aacggttcgt cataaccgcc      3120
     gacatcgaaa agatgtttcg ccaaattcga attcacccat cggattaccc actacagcgg      3180
     attctctggc gcagctctcc aacccagcca cttcgcacct tcgaactcac aaccgtgact      3240
     tacgggactg cctctgcccc ctacttggca accaagtgcc tccagcagtt gtccaaggac      3300
     ggagcggaca attttccact cgcatcggct accctggccg aagatttcta catggatgac      3360
     atgttgactg gtgttgacga tgagcaagaa ggcgaagagc tctgccagga gcttttacag      3420
     ttgatgcaat ctgcaggctt gagcttgcgc aaatggtcat cgaattcgcc tacaatcctc      3480
     tcgaaaattc ccgctgagct tcgtgacgaa cgaaccagct tctcgttgga ttctccttcc      3540
     gctcccatca agacgctggg gctgcagtgg cagcctatgg acgacctgtt tcgctactcc      3600
     gtacccaaat ggtcccagga gggatcaatc actcgtcgca ccgtactgtc ggacacagct      3660
     cggctctacg accctctcgg gctgatcggt ccggtagtgc tactcgccaa actcttcgtg      3720
     cagaccctct ggcgaacttc caggagctgg gacgatccac tcgatgaatc cgagcagcgg      3780
     cactggttgg agttccgtag caacttggat ggattagcat cgatcagcat accaagatgg      3840
     gcggcgcctg tctccactct cgcatcgatt gaagtccacg ggttctgcga cgcctcggag      3900
     aaggcatacg gagcctgcat ctactggaga accgtatcaa cggatgggac gatcgctgta      3960
     cgcctgctaa ccgccaaatc gaaggtggct cctctcggtg attcgaagaa gcagaagcgc      4020
     atctgtttgc caagattaga actctcatcg gcgcttctgt tgagtcatct ttaccataaa      4080
     gttcaaacca gcacgaagtt gaaagtcaag gccatctttt ggtcagactc catgatcacc      4140
     ctgcactggc ttcgctcgac gccttcgcga tggaaaacct tcattgcgaa tcgcgtttcg      4200
     gaggtgcaac atctgacggc tggtggtatt tgggcgcatg ttccaggcat cgaaaatccc      4260
     gcggatatca tttcccgtgg catggatccg gcacagcttc aagaaaccga atcttggtgg      4320
     aatggtccgc catggctgag tcaaccgtcg cggttctggc cgcttctcac tccacaamtc      4380
     tctgtggacc tgccaccgga gctcctagaa gaacgaacag tttcactacc cgtgcaggtg      4440
     gtccccccaa gcgaagtatt ctccattcga tcgtcgtttc cggcgctcgt tcgtactgtt      4500
     gctcttctgc gtcgcttcgg ccacaacagc aagccccaca accgctcaga ccggagatac      4560
     ggattcctac aaacgtcgga actagctgaa gccacaaaca ctttagtcca acttgcccaa      4620
     cacgaagctt tcgccaagga tatcgccgct gttgctaaka acggccaggt tgagccaaac      4680
     tcagttctac gaaacctcac tccgatcctc gttgatggga ttcttcgaat tcgcggccgg      4740
     ttgagacacg cggccatctc cgacgacaga aagcacccta tcatcttgcc agcccgacac      4800
     cctctaacta ctgctatcgt tacctactac cacctgaaga acctacacgc cggcccgcag      4860
     ttgctttcag cmtgtgtccg ggagaaatac tggccacttc ggcttcgcga cctagcccga      4920
     agcgtagttc actcttgcgt cagttgtttt cgctgccgcc ctcgtaacct cgagcagatc      4980
     atgggagatt tgccaccaga gcgagttact ccgacgttgc cgttcctcaa caccggagta      5040
     gatctctgtg gaccgttcta ctaccgtaaa atccggaagg cacctcccat aaagtgcttc      5100
     gtagccatct tcgtgtgcct tgtcactaag gcagttcatg tagagctagt ctacgatctt      5160
     tccacggcgg cgtttctaac agcgctgcac cggtttatcg ctcgaagagg aaagccgaat      5220
     ctgatagagt gcgacaacgc cacaaacttc agaggtacgg caggggagct gaaggaattg      5280
     gccaagcagt ttcgttcaca gcagcaccag ggtgaagtag tcaaccactg tgcagatgaa      5340
     ggcatcacct ttaagttcat cccaccccgc agcccaaact tcggtgggtt gtgggaggcg      5400
     gcggtgaagt cctttaaaca acactttcgc cgaaccatcg gaaactccat tctctctcag      5460
     gacgaactca ttaccctgct gacccgcatc gaagcctgtc taaattcgcg gccactgacc      5520
     cccctcacgg ccgacccaaa cgatctggag gtgttaaccc cgggtcactt ccttgttcat      5580
     cgtccgctca ctagtttccc tgaacccgac ctctctaatg tgccacaaaa tcgactagac      5640
     cgctaccaaa acaaccaaga gcttctccgg cgagtctgga aacgatgggc aacagactac      5700
     ctatctggcc tccacccacg caccaagtgg acacgtgttc gggacaacat cgtcgttgga      5760
     acgatggttc tcctgaaaga agacgacctt ccgcctctga agtggaagta tggaagggtt      5820
     atcaacatta tccgtggaga cgatggcaac atccgggtcg tagatgtccg gacagcagat      5880
     ggagaatacc ggcgcgcaat cacgaagatc tgcgtgctcc ccatacggca accaacaaca      5940
     gaaccggccg gcgcggctgg tcccaaccca gacgagtctt ccatcgcagt actctagtac      6000
     tgtgcaacga tcggaggctt tagggcctcc gaaccctgta agtattgttg tataatgaat      6060
     tgtcaaaaaa cttaaggaat gtttgtactc cggcatgtgc tgcgcatcga tggctgctcc      6120
     gatggccaac cattgagtac gcccaacctg acgaatgcga gatgaacccc acccaaccga      6180
     ccgtcgagtg cgtcgtagcg aggaaacccc gatgacgtca tcacgagcaa tgggataccg      6240
     ccagctaatc gacagcctag atgactggca acgatgtacg atcgccgagg tcgctgacct      6300
     gcggtgttga gaaacagcgg aatcaaaaca gaccggcgag tcttccgaga agcgacgaat      6360
     gtacccgacg gcgattgatc atccagcacc tcctctctca gcatcatccg tatcagcctg      6420
     tatggttgaa agctacgacc tttcaacagg ggccggcata                            6460
//
ID   BEL-741_AA-LTR repbase;    DNA;    INV; 445 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-741_AA-I;
KW   BEL-741_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-445
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-445
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 570-570 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 445 BP; 125 A; 108 C; 73 G; 139 T; 0 other;
     tgttggagcc accctagaat taagagcata agtatctcct actctcatat actctcacgt        60
     actcactgtt ctaaaattat cagtaccaat acctatctca tttgttccta ctataagtgc       120
     attattatca atcattcttc cttatcacta gcactctgct agcgagagaa aagcgatttc       180
     gatcttcgga taggcctttt cttcagtttc ccttttggac tcaatttgtc atatattgcg       240
     atatgaaaac cagtaccagt tagtcaaata caaactaccg aacagtgcgc atctacttta       300
     caacttcgtc gtttatgtac atttcccgtc gagaataaat ctctgtccgt agttagtccg       360
     tatagtaaac gtgacgtgtg tgcttcgcga agtgaaagaa caactcccgc ttaaaaaggg       420
     tctcccaaag tccgccgcgg ttaca                                             445
//
ID   BEL-742_AA-I repbase;    DNA;    INV; 6018 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-742_;
KW   BEL-742_AA-I; BEL-742_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6018
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6018
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           614..5962
FT                 /product="BEL-742_AA-I_1p"
FT                 /translation="MADTVEALHQCCQASRNKVERIRVAIAASNQDHTKFS
FT                 FHALKLYLKTVDACYDEFNGFLNRIYLTDVSRKAEFENHFIDFEELYEFTR
FT                 IALCEMIQAFEEEQRAVAEVSIAERKRMLNTSNDGDVSQPGSSASNAQTRN
FT                 PPSLILQQAPLPTFDGRYDQWFKFKARFRDIVDRCVFDSDATKLHHLDKAL
FT                 IGEAKGAIDEQTLNDNNYHGAWKILIDRYENLPMVIHGHITKLLNLKPMAK
FT                 ESTHELRALIDDCVKRVESLQFHKLKMDTMGEAIIITLLASKLDPATRKAW
FT                 ELSVEHGKLPVYKDTIAFLRNHCHVLERCEQGTGSVKARSQLSISKSPSGV
FT                 AAHKTHTVTVVKPDDGCLICSGKHLIESCDIFKGLLVSARYEKAKHLGLCF
FT                 GCLKRGHRTSNCKNKPACPSCPKKHHPLMHYEEKKSVSTDPPVESKQGGDN
FT                 PGNQPLTAAKCVIPFEPTVTKKQILLATAVVKVFDSCGVSYDCRVLLDSGA
FT                 MASFISERMANLLNLRRVSANVPIVGVNGMNTMVKFKISAKVASRTSDHSF
FT                 VVEYLVVPQVTGPLPTTKIDSSSWPMPDALELADPKFYEPSRIDMLIGAEM
FT                 FFELIRAGQYRMSSDLPVLQESALGWLVGGPIAGGAALNNVEVCHASPTDT
FT                 SNEQLCELLKRFWAIDNQQDETSYESNEFCEEHFMRTHTRTPEGRYVVMIP
FT                 FRNNLGDLGGSRMQAETRFHSLERRLERSPEMKKMYVDFINEYLTLGHCRI
FT                 INEAEHSTEGAYYLPHHCVIKPDSSTTKLRVVFDASAKSTSELSLNDVMMI
FT                 GPTVQDSLFDIVLRFRMPKYAFTADVSKMYRQVLVNPEHRKYQRILWRENI
FT                 TDPLKELELSTVTYGTAAAPYLATRVLVQLAKDEQNNFPTASKSVLKSVYI
FT                 DDVLDGANTLDDAKQLQNGLKMLLARGGFELHKWCANDEALLEEIPAQSQE
FT                 KLLKFCDGDESAVIKTLGILWDPTKDAFMFRVRPMDDNVAKPTKRSVLSET
FT                 AKLFDPLGFLAPTVVIAKMIMQRLWSEKMNWDEPLPEEELYNWMKLRSELC
FT                 NISSFKIDRRLTADGMVKEELHGFSDASMVAYGCCIYLRSVKMDGTVQVQL
FT                 VCAKSKVAPMKEQNRTVNTEAEPEEMTIPRLELCAAVLLVEQMKKVREALA
FT                 FDTERVVLWADSKIVLCWIRKLNLKTSVFVRNRVMKIRNLMPNVKWNYVAT
FT                 KENPADLVSRGVFPNELTRCTIWWTGPAFLQVADYESNSVEEFTTEQAVAV
FT                 AVDADFEEPVPDQVASVAVTENIMYNVIMNSSSLRKLQRLFGYVKRFIFNC
FT                 RALKRQQERRYGWLSSVEHNEALLAIVFVVQHCELADDIDQIQKQKPASRA
FT                 LRNVNPFYDSCERLLRVGGRIRHSDLPRDQKHPMILPERSHFTDILVEALH
FT                 VENLHVGLNGLLAIVKQRFWPISAKRAIHRVLRKCITCFRSKPPEMQQFMG
FT                 DLPSCRVTVAQPFSRTGIDYAGPFLLKVGARSKIKLKAYVGLFVCMVTKAV
FT                 HLELVSSLTTDGFIAALHRFAGRRGNPSEILSDNGTNFHGADRQLTELVTL
FT                 LRSQVHQQRVNEFCQPRGITWKFIPPRAPHHGGLWEANVKCMKTHLYKILN
FT                 ESYLTYEEMNTLLVQIEGILNSRPLIQLTDDPLDYEALSPGHFLIGRELTA
FT                 VAEPVYEDLRETSLSRYQLVQRRKQCFWRRWSSEYITSLQRRGKWYKEPAA
FT                 LRKGLMVILKEDNMPPQMWKLGRIEEVFPGPDGVIRVVDVRTSSGVYRRAT
FT                 TKIAVLPINDEV"
XX
SQ   Sequence 6018 BP; 1709 A; 1261 C; 1552 G; 1496 T; 0 other;
     ttggtccttg acgtaccgga tattgaatta gcgctttgat ttcctgcagt tcgtgcgcga        60
     tcaggaaaat attgacgtgt ttcgaccggt cgacggaagt tcggcacagt tcgcgacgcg       120
     agttgatttc tggctaaggc ctcaagcaca atgtgaacgg caacgcggta caacggcaaa       180
     acggcatgcc catcttgatc taccctttac ttatcaatcc catgttgact aaatcctttt       240
     ccacattgac ttgacaagta gagtgtagat caagatgggc ttgtcgttat gccgttgtac       300
     cgcgctgccg ctcacattgt gcgtggggct taagtagtgc cagaaaagtg cgaaaaagtg       360
     atcggcttgg agagcgccga aatttgattc caagggcttg tgtccctttg aaagcagaac       420
     cgattttcct tgatcgtgat tgacggagga agtgatgata tgttcctccg atccggaaag       480
     gtgaaaaaag ttttgttccc tgcaaatacg actccatttt tgacaccgcg tggtgaagag       540
     agagtttcga gctcggttca aagtgttcgt gaacagagag agcagcaaga acgtcgaaat       600
     aaggaaaaaa aacatggccg acacagtcga ggctctacac cagtgttgcc aagcgtctag       660
     gaacaaggtg gaaaggatcc gggtggcaat tgctgcatcg aaccaagacc acaccaaatt       720
     cagctttcat gctttgaagc tatatttgaa gactgtggat gcttgttacg atgagtttaa       780
     tggattcctg aatcgcatct atttgacgga tgtttcccgc aaagctgagt ttgaaaacca       840
     tttcattgac ttcgaggagc tctacgaatt cacccggatt gcgttgtgtg agatgattca       900
     agccttcgaa gaggaacaac gagctgttgc ggaagtttcc atcgcggagc gaaaaagaat       960
     gctgaatacg tcgaacgacg gcgacgtcag tcaaccgggt agcagcgcat caaatgctca      1020
     aacacgaaat ccgccttcgt tgattttgca gcaagcacct ttgcccacat ttgatggacg      1080
     ctacgatcag tggttcaaat tcaaagcaag attccgtgat attgttgaca ggtgtgtatt      1140
     tgattcggat gcaacgaaac tacatcacct ggacaaagct ttgattggag aagcaaaggg      1200
     tgcgatcgac gaacaaactt tgaacgacaa taactaccat ggtgcctgga agatactgat      1260
     cgaccgttat gagaatctgc cgatggtaat ccatggacac ataacgaagt tattaaactt      1320
     gaagccgatg gctaaggaat ccacccatga gttgcgagca ttgatagacg actgtgtaaa      1380
     acgagtggaa tcgcttcaat tccacaaact gaaaatggat acgatgggtg aagcaatcat      1440
     catcacacta ttggcgtcga aactggatcc tgccacaagg aaagcttggg agctgtcggt      1500
     cgaacacggt aaactaccgg tgtacaagga cactattgcg tttttgagga accactgcca      1560
     cgtattggag cgctgcgaac aaggaactgg ttcggttaaa gcaaggagtc aactttcaat      1620
     ttcgaaatca ccatctggag ttgctgcaca caaaacgcac actgttacag tcgtaaaacc      1680
     agatgatgga tgcctaatat gctcaggaaa acatttgatt gaatcctgcg atattttcaa      1740
     aggcctacta gtgagtgcac gttacgaaaa ggcgaagcat ttgggtttgt gtttcggatg      1800
     cctcaaaagg ggccaccgga cgagtaattg caagaacaaa ccagcttgtc cgtcgtgccc      1860
     aaagaagcat catccactca tgcactacga agaaaaaaaa tctgtcagca ccgatccccc      1920
     cgtagaaagt aaacaaggtg gtgataaccc tggcaaccaa ccactgacag cagcgaaatg      1980
     tgttattcct ttcgagccga ccgtaacgaa aaaacagatt ctgttggcaa cggctgtcgt      2040
     gaaagtgttc gattcttgtg gtgtttcgta cgattgtcgt gtgctgctcg attcaggcgc      2100
     catggcaagc tttatttcgg agcggatggc gaatcttctg aacctgcgca gagtgagtgc      2160
     aaatgtacca attgttggcg tcaatggaat gaacacgatg gtcaagttca agattagcgc      2220
     aaaggtggct tccagaacca gcgatcatag ttttgttgtg gagtatcttg tggttcctca      2280
     agtgactgga ccgcttccga caacgaaaat cgattcatcg agctggccga tgccggatgc      2340
     attggagttg gccgatccaa agttctatga gccaagccgc atcgatatgt tgatcggagc      2400
     cgaaatgttt tttgaactga tacgagcagg acagtaccga atgtcgtcag acttgccagt      2460
     actacaagaa agcgcgttag gatggctggt aggaggccca atagctggtg gagctgcact      2520
     caacaatgtg gaagtgtgtc acgcttcgcc aacggacact agcaacgagc agttgtgcga      2580
     gttactgaaa cggttttggg ctattgacaa ccagcaggac gaaaccagct atgaaagcaa      2640
     cgagttttgt gaggaacatt ttatgcgaac acacacacga acaccagaag gacgttacgt      2700
     tgtaatgata ccttttcgta acaatcttgg ggatttgggt ggatcgcgaa tgcaagcaga      2760
     gacgaggttc cactcactag aacgacgatt ggaacggtct cccgagatga agaagatgta      2820
     tgtggacttc atcaacgagt atctgacgtt agggcactgt cgaataataa atgaagcaga      2880
     gcattcaaca gaaggtgcgt attatctccc ccatcattgc gttataaaac cagatagctc      2940
     caccactaaa ttgagagtgg tgttcgatgc ctctgcgaaa agcacttcgg agctctctct      3000
     gaatgacgtc atgatgatcg gtccaaccgt tcaggattcc ctatttgata ttgtgttgag      3060
     atttcgaatg cctaagtatg cttttactgc cgacgtctcc aaaatgtatc ggcaggtatt      3120
     ggtgaatcct gagcatagga aatatcaacg catattgtgg cgagaaaaca taaccgatcc      3180
     tttgaaggaa ctagaactga gcacggtgac ctatggaacc gctgcagcgc cgtatctggc      3240
     cacacgtgta cttgtgcagc tagcaaaaga cgagcagaac aattttccga cggcaagcaa      3300
     atctgtactg aaatcggtgt atatcgacga tgtactcgac ggcgcaaaca cgttggatga      3360
     tgcaaagcag ttacagaatg gtttgaaaat gcttcttgct agagggggat ttgaactgca      3420
     caagtggtgt gcgaacgatg aagcacttct agaagagatt ccggcacaat cacaagaaaa      3480
     attgctgaag ttctgcgacg gtgacgagag tgctgtgatt aaaactctgg gaatactttg      3540
     ggatccgacg aaagatgcct tcatgtttcg agttaggccg atggatgata atgttgcaaa      3600
     accgacaaaa cggtcggttt tgtcagagac cgccaaattg ttcgatccat tgggattttt      3660
     ggcgccaact gtggtaattg ctaagatgat aatgcagcgg ttatggagcg agaagatgaa      3720
     ttgggatgag cctcttccag aagaggaatt atacaactgg atgaaactac gatctgagct      3780
     ttgcaacatc agttcattca aaatcgatcg gaggctgaca gctgatggta tggtgaagga      3840
     agaactccat ggattttctg atgcctcgat ggtggcatat ggctgttgca tatatttacg      3900
     aagcgtgaag atggacggta ctgtgcaagt gcagctggtc tgtgccaagt cgaaagtagc      3960
     accaatgaag gagcagaatc gtaccgtgaa taccgaagcg gaacctgagg agatgaccat      4020
     cccaaggctc gagctgtgtg cggctgtttt attggtggaa cagatgaaga aagtgcgcga      4080
     agccctagca tttgacaccg aaagggtggt gctatgggcc gattctaaaa tcgtgctgtg      4140
     ttggataaga aaattgaact tgaagacttc agtgtttgtg agaaaccgag tgatgaagat      4200
     ccgtaatttg atgccgaacg ttaagtggaa ctatgtagcg accaaagaaa atccggcaga      4260
     tttagtgtcg cgaggtgttt ttcccaacga actaacgaga tgtaccattt ggtggacggg      4320
     tcctgcgttt cttcaagttg cagattacga atctaacagc gttgaagagt ttactactga      4380
     acaagcggta gcagttgctg tcgacgccga cttcgaagaa cctgtacctg atcaggtagc      4440
     gagcgttgct gtaacagaaa acataatgta caacgttata atgaattcaa gcagtttgag      4500
     aaagttgcaa cgactgtttg gctatgtgaa aagatttatt ttcaattgcc gagcattgaa      4560
     gcgtcaacaa gagcgacgat atggatggtt gagcagtgtt gaacacaacg aagctttgct      4620
     tgcaattgtg tttgttgtcc agcactgtga actcgctgat gatattgacc agattcagaa      4680
     acagaaaccg gccagtagag cgttgagaaa cgtgaacccg ttctacgaca gctgcgagcg      4740
     attactcaga gttggtggtc ggattaggca ttctgatcta ccaagggatc aaaagcatcc      4800
     aatgattctc ccggaacgca gccatttcac agacatcctc gttgaagcgc tacacgttga      4860
     aaacttgcac gtcggcctga acggcctctt agccattgtg aagcaacggt tctggcctat      4920
     tagtgcgaag agagcaattc atcgagttct gcgtaaatgc attacgtgtt ttcgctctaa      4980
     acctccagaa atgcaacagt ttatgggaga tctgccttcc tgtcgtgtaa ctgtagctca      5040
     accgttttca agaacaggaa ttgattatgc tgggccgttt ctgctaaagg tgggtgcacg      5100
     ctcgaagatc aaattgaagg catacgttgg cctatttgtg tgtatggtca ctaaggctgt      5160
     acaccttgaa ttggtgtcct cgttaacgac ggatggtttc attgcggctc ttcatcggtt      5220
     tgctggacgc cgtggcaacc cgtctgaaat tctgtcagac aatggaacca acttccatgg      5280
     tgccgatcgt caactcacgg aattagttac acttttgaga tctcaggttc atcagcaacg      5340
     ggtcaacgaa ttttgccagc caagaggaat tacttggaaa ttcattcccc cacgcgcccc      5400
     gcaccatggt ggattatggg aagcgaacgt aaagtgtatg aaaactcatc tttacaagat      5460
     attgaacgag agttatctta catatgaaga gatgaacacc ttgttggttc aaatagaggg      5520
     aatattgaat tctcgacccc ttatacagtt aaccgacgat ccactggatt acgaggcttt      5580
     aagccctggc cattttttaa tcggccgcga actaactgct gttgctgagc cagtctacga      5640
     agatctacgc gagacaagtc tgtcacgata tcaactagtg cagagaagga agcaatgctt      5700
     ctggcgtcga tggtcaagcg aatacataac cagcttgcag agacgtggta aatggtataa      5760
     agaacctgcg gcattgcgaa agggtttaat ggtaatactc aaggaagaca acatgccacc      5820
     tcaaatgtgg aagctgggtc gcattgaaga ggtatttccc ggccccgatg gtgtaattag      5880
     agtagttgat gtgcgtacaa gcagcggagt ttatcgacga gccaccacga agatagcagt      5940
     tctacccatt aatgacgagg tgtaacgagt atcgtggatt gagggtatcc tgcgagtctt      6000
     acccaccgcg ggggtgta                                                    6018
//
ID   BEL-742_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-742_AA-I;
KW   BEL-742_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 594-594 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 68 A; 39 C; 39 G; 68 T; 0 other;
     tgttacgagt gaaaacgagc atttctttca gttataaact ggccacccta tacaattgaa        60
     tttattagtg tgagtaatag aggggtcagt taccgagaca atttttcagt ttctttgcgt       120
     acaacgccgt gatcagtacg cgtattttat cgctaaataa aaattgttaa aaatacagtc       180
     cacagtgcta atttcacttc tatccgaagg aaca                                   214
//
ID   BEL-743_AA-I repbase;    DNA;    INV; 5606 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-743_;
KW   BEL-743_AA-I; BEL-743_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5606
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5606
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 618-618 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           261..5603
FT                 /product="BEL-743_AA-I_1p"
FT                 /translation="MTPPKTRSAAKAAAEAASNWEVTADAETLKELSSLSR
FT                 QRDQVSLKLTRVERALVAARNQVSPSQLRTFLKNIDDAYSEFSTVHSKLIA
FT                 IIPDEAFRQQEEVYVSFEERYNYVRTTIDELMLANEMNPVRAPVPQPQVIV
FT                 QQQPLKVPIPTFDGSYANWPKFKAIFQDLMVNSGDSDAIKLYHLDKALVGE
FT                 ASGVLDAKVISEGNYQQAWAILTERYENKRIIVETHIRGLFDINKMASGSY
FT                 KELRRLHDECTRHVESLKYLEQEFSGVSDLFLVHIVTSAMDQPTRMAWEAT
FT                 QKKGELPTYAQTISFLQTRCQMLENCEIAFPKSFSPLQQRSNPKGQASTKP
FT                 ANVKVYAAGTEPRKKDSCDFCQGPHRNYQCDTISNMPFEKRMEKVRASGVC
FT                 FNCLRKGHSARDCSSTKTCQKCQKRHHTQLHHEEPKQEPKTSVPVLAQAMR
FT                 PAVVQKSVSTSTSTRETPNTPLSCNYANSTRTVFLLTAIVNVLDKNDRPHP
FT                 CRVLLDSGSQVNFITAELANRIGSEKHRVDIPIRGINDVKTIARDKMVVRF
FT                 RSRVSDYQAQVQCLITPCVTGVIPTSQVDVSSWNIPFGVQLADPEFHKPEK
FT                 IDMLLGAELFLQLLRPGHIKLDEDFPELRETSLGWVVAGVFKERSVLNEVQ
FT                 HSFTASLDDVEEAIHRFWNIEEVPDVSPLSSEEQECEAHFRATHRRTEDGR
FT                 YVVRLPFRSNVNELDDCRSVALKRFLMLQQRLQKNPELKQQYIDFMREYEQ
FT                 LSHCREIREEDDDPNQQNYYLPHHAVLRPSSSTTKCRVVFDASAKANAASL
FT                 SLNEVLQVGATVQKDLYDVMLRFCKYKIAFTADVPKMYRQIIMDPRDTHFL
FT                 RVFWREQPYDPLRVLELTTVTYGTASAPFQATRCLQQLAEDESTDYPIGAR
FT                 IVREDFYVDDALSGADSLSSAVEAVKQLKGIMQKGGFSLHKWCSNSRELME
FT                 HIPVTEQEQPAPLEEYGPNGVIKVLGLLWDPKADIFRIAKPIQHNVKQPAT
FT                 KRIIYSEVARLFDPLGLVSPVIVVAKLLVQQLWKCKIGWDDPVNEETQKFW
FT                 ETFASSLSALGKIAIPRRITFNDAVDYELHGFADASTVAYGACVYVRSLFA
FT                 DGSARLKLVTSKSKVAPLHELSMPRKELCAALLLTRLVQKVVQVLQMEFRN
FT                 VVLWSDSQIVLAWMKRPAHRLKVFVRNRINEINNGTTGYQWCYIRSRENPA
FT                 DIVSRGLLPSDLCENSLWWYGPAFLSTLEYDAEDAADIPEDMLPELTITDT
FT                 VATAVEDDFPLFARFSDFRKIERIMAWVLRFICNARLKEKSKRKNTRHITI
FT                 TELRYANHMIVKMMQQSELADEIRRVENGIPSRRLGNLNPIFIDGLLRVGG
FT                 RLHHSNLPAETKNPIILPNKHPLTRLMIKALHSEHLHLGQNGLMAVIRQRY
FT                 WLLNARSTIRHVTRTCVTCFRTNPKLSTQLMGNLPQSRITPSPPFAVTGVD
FT                 YAGPFWIKMGNYRSRLVKCYVAVFVCMTTKAVHLEAVSELTSDAFIAALQR
FT                 FVSRRGLVHQLHSDNATNFRGAQNELHQLYNQFQDQQFIDRVHSFCQPRRI
FT                 EWHFIPPNSPEFGGLWEAAVKSMKKHLVRVVGESKLSYEELATVLTEIEAV
FT                 LNSRPLFSISSDPADEEVITPAHYLIGRPLTAIPEPSLESIKINRLKRWKY
FT                 LQKMREDFWKSWSKDYLCSLQQRPKNVKKMANLRPGMVVLLEDKTLPPLVW
FT                 KLGRISQVYPGADGLVRAIDVFSNGSTYRRAINKVAVLPIEDNESPSSFAN
FT                 TVETAYQPGG"
XX
SQ   Sequence 5606 BP; 1549 A; 1407 C; 1362 G; 1288 T; 0 other;
     tagtggtcct tcgagccgga tccagtgccg ccccaccgcc gttggaaagg attacgcacc        60
     accgctaccc gacacgttta cgtggcactc tagccagaac gtgtaccgcc tgaggatagg       120
     agaagctgct actgctaccg ccgccaccgt ttgtggatta ccgagcattc gtcgcccaag       180
     gagaactcta caccgccgtt ccgacccgac acgctgtcgt tacccgcaac gctgtgtgtt       240
     ccaactgaag atcgtctact atgacacccc cgaagaccag atcggctgct aaggcagcag       300
     ctgaagccgc ttccaactgg gaagtcaccg ccgatgctga gacattgaag gagctttcgt       360
     cgctgtcccg ccaacgtgac caagtgagcc tgaaactaac gagagtggaa agggcacttg       420
     tcgccgctcg caaccaggtt agtccttccc agctgaggac attcttgaag aacatcgacg       480
     acgcctacag tgaattcagc acagtgcaca gcaaactgat cgccatcatt cccgacgaag       540
     ccttccgcca gcaagaggag gtttatgtgt cgtttgaaga acgatacaac tacgtccgca       600
     cgaccatcga cgagctgatg ctggcaaacg agatgaaccc cgtcagagct ccagtgccac       660
     agccacaagt aatcgtgcag cagcaaccat tgaaggttcc gatccccacc ttcgatggat       720
     cgtatgccaa ctggcctaag ttcaaggcca tattccagga cttgatggta aactcaggcg       780
     attccgatgc catcaagctt taccatcttg acaaggcgct tgttggtgaa gcatcaggag       840
     ttctagacgc gaaggtcatc agcgaaggga actaccagca agcatgggcc atcctcaccg       900
     aaaggtacga gaacaagagg atcatcgtgg agacgcacat tcgtggccta tttgatatca       960
     acaaaatggc ttctggttcg tacaaggaac ttcgacggct tcacgacgaa tgtacccgtc      1020
     atgtcgagag cctgaaatac ctcgagcagg agttctccgg tgtttccgac ctctttctgg      1080
     ttcacattgt gacgtctgcg atggatcagc caacgaggat ggcatgggag gcaacacaaa      1140
     agaaaggcga gctaccaacg tatgcccaga ccatctcatt tcttcagaca aggtgccaga      1200
     tgctggagaa ttgtgaaatt gcgttcccga aatccttctc cccgcttcaa cagagatcga      1260
     atcccaaggg tcaagcatca acgaagccag ccaacgtaaa ggtctatgct gctggaaccg      1320
     aaccaaggaa gaaggatagc tgcgatttct gccaaggtcc gcatcgcaac tatcaatgcg      1380
     acacaatcag taacatgccg ttcgagaaaa ggatggagaa ggtacgagca tctggagtct      1440
     gtttcaactg tctccgtaag ggacacagcg ccagagactg ctcatcaacg aaaacgtgtc      1500
     agaagtgtca gaagcgacac catacacagc tccaccacga ggaaccgaag caagagccaa      1560
     aaaccagtgt gcccgttttg gctcaagcaa tgcgccctgc agttgttcag aagagtgtat      1620
     ccacctcgac ctcaaccaga gagacgccga acactccgtt atcgtgcaac tacgccaact      1680
     ctacgaggac agtgttcctg ctaacagcta tcgtcaacgt gttggataaa aacgatcgtc      1740
     cgcatccctg ccgagtgctt ctggatagcg gatcgcaagt aaacttcatt acagctgagc      1800
     ttgcgaaccg tatcggaagt gagaaacatc gtgtcgacat tccaatcaga ggaatcaatg      1860
     atgtcaagac tattgcccgc gacaagatgg tagtgaggtt ccgatcccgt gtttccgact      1920
     atcaggcaca agtgcagtgc ttgataacgc cctgcgttac aggagtcatt ccgacgagcc      1980
     aagtggatgt atcgtcctgg aatattccct tcggcgtcca acttgcagat cctgagttcc      2040
     acaaaccgga aaaaatcgac atgcttcttg gcgcggaact cttcttgcag ttgctgcgac      2100
     caggtcatat caaactcgac gaagatttcc ccgagctccg tgaaacctcc ctaggatggg      2160
     tggtagccgg agtcttcaaa gaacgctccg ttctcaacga agtgcagcat tcgttcaccg      2220
     catcgttgga tgacgttgag gaagcgatac atcgtttctg gaacatcgaa gaagtgcccg      2280
     atgtgagccc attaagcagt gaggaacaag aatgtgaggc tcattttaga gctacccatc      2340
     gtcgtactga agatggacgg tatgtagtgc gactaccgtt tcgatctaac gtcaacgagt      2400
     tggatgattg ccggtctgtt gctttgaaac gatttctgat gctgcaacaa cgtcttcaga      2460
     agaatccgga gttgaagcag cagtacatcg acttcatgcg tgaatatgaa cagctgtcac      2520
     attgtcgaga gattcgagag gaagatgacg atccgaatca gcagaactat tacttaccgc      2580
     accacgccgt attgcgccct tcgagttcga caacaaaatg cagagtagta ttcgacgcca      2640
     gcgcaaaggc aaatgcagct agcctttcac tcaacgaggt tcttcaagtg ggtgcaacgg      2700
     tacagaagga cttatacgac gtcatgctac gcttctgcaa gtacaaaata gctttcaccg      2760
     ccgacgtccc caagatgtat cgacagatca tcatggatcc acgggatacg cacttcctac      2820
     gtgtgttttg gcgcgagcag ccgtacgatc ctcttcgagt attggaactc acgacggtaa      2880
     cttacgggac tgcatctgcg ccgtttcagg ccacccggtg cctgcagcaa cttgccgaag      2940
     acgaatcgac tgattatcct atcggagccc gtatcgtacg agaggatttc tacgtagacg      3000
     acgccctttc aggtgcagat tcgctttcat ctgcagttga agcggtgaag cagctgaaag      3060
     gtatcatgca gaaaggaggt ttctcactgc acaagtggtg ttcaaactca agggagttga      3120
     tggaacacat cccggtaacc gaacaggaac aaccagctcc tttggaagaa tatggaccaa      3180
     acggagtcat aaaggttcta ggtctactgt gggatccaaa agccgacatt tttcgaattg      3240
     ccaaacccat ccagcataat gtgaagcaac ccgccacaaa aaggattatt tattccgagg      3300
     tagcaagact ctttgatcca ttgggtcttg tatccccagt gatcgtcgtc gctaaacttc      3360
     ttgtgcagca gctgtggaaa tgcaagattg gatgggacga tccagtgaat gaagaaacgc      3420
     agaaattttg ggagaccttc gctagctctt tgtcggcgct tggaaagatt gcaatcccta      3480
     gaagaataac attcaacgac gccgtggact acgaactaca tggatttgcc gatgcatcaa      3540
     cagtggcata tggtgcatgc gtgtacgttc gaagcctgtt cgccgatgga tcagcaagat      3600
     tgaaattggt taccagcaaa tccaaggtag cgccgctgca tgagctatca atgccccgaa      3660
     aagagctgtg cgctgcgtta ctgctgaccc gacttgtaca aaaggttgtc caagttctac      3720
     aaatggagtt tcgcaacgtg gttctctggt cagacagcca gatcgtcctg gcttggatga      3780
     aacggcccgc acatcggttg aaggtttttg tacgcaaccg tatcaatgag atcaacaacg      3840
     gcacaaccgg gtatcaatgg tgctatattc ggtccagaga aaatccagca gatatcgtat      3900
     ccagaggtct actgccgagc gacttgtgtg aaaacagtct ttggtggtat ggaccggcat      3960
     tcctttcgac cctcgaatac gatgcagaag atgctgcgga catacctgag gacatgcttc      4020
     ccgaattgac aatcaccgat accgttgcaa cagcagtaga ggatgacttt cctttatttg      4080
     cccgattcag cgatttccgg aagatagaac gtatcatggc ttgggtgctt cgattcatct      4140
     gcaacgcacg tctgaaggag aagtctaaac gtaagaacac acgccatata acaatcaccg      4200
     agcttcgata tgcaaatcat atgattgtga aaatgatgca gcagtctgaa ttagccgatg      4260
     agattcgccg tgtggaaaat ggtatcccta gtcgcagatt aggaaacctg aatccaatat      4320
     tcatcgatgg attgctgcgc gttggtggac gtcttcatca ttcaaatcta ccagcagaga      4380
     cgaaaaaccc aatcatactg ccgaacaagc atccactgac cagactgatg attaaagcgc      4440
     tgcattctga acatcttcat cttggccaaa atggtttaat ggctgtcatc cgtcaaaggt      4500
     attggttgtt gaacgcccgt tcaaccattc gacacgtgac aagaacctgt gtaacgtgtt      4560
     ttcgcacaaa cccaaaattg tcgacacaac taatgggaaa tcttccgcag tcgagaatca      4620
     ctccatcccc gccgtttgca gtaactggag ttgattatgc aggcccgttt tggataaaaa      4680
     tgggaaatta tcgttccaga ttggtcaagt gctatgttgc tgttttcgtt tgtatgacta      4740
     caaaagcggt acaccttgag gctgtatcgg agcttacatc ggatgcattc attgcagcgc      4800
     tacaacgttt tgtaagtcgt cgagggctgg tccaccagtt gcattctgat aatgcaacga      4860
     attttagagg agcacagaac gagttacatc agctttacaa ccaattccaa gaccagcagt      4920
     ttatcgatcg ggttcattca ttctgtcaac caagaaggat cgaatggcat ttcatcccgc      4980
     cgaactcccc agaattcggt ggcctatggg aggccgctgt aaaatcaatg aaaaaacatt      5040
     tggtccgagt tgttggcgaa tctaaattat cgtatgagga gcttgcaacc gtgcttactg      5100
     aaattgaagc agtactaaac tcaaggccgc tgttttcaat ttcgtccgac ccagctgacg      5160
     aggaagtcat tacccctgcc cattacttga ttggtcgtcc attaaccgcc atacctgagc      5220
     catccctcga gagcattaaa ataaaccggc tgaaacgatg gaaatatctt caaaaaatgc      5280
     gtgaggattt ttggaagtca tggtccaagg attatttgtg cagccttcaa caaagaccga      5340
     aaaacgtgaa gaagatggca aatctacgcc caggaatggt agttttgctg gaagacaaaa      5400
     cactacctcc actcgtctgg aaactaggac gcataagtca agtgtatcca ggagcagatg      5460
     gattagtacg cgcaatcgac gttttctcaa atggatccac ttatcgccga gcaatcaaca      5520
     aggttgcagt cctgccaatt gaagacaacg agtcaccctc atcatttgcg aatactgttg      5580
     aaactgcgta tcaaccgggg ggagta                                           5606
//
ID   BEL-743_AA-LTR repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-743_AA-I;
KW   BEL-743_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-581
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-581
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 571-571 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 581 BP; 167 A; 144 C; 143 G; 127 T; 0 other;
     tgttccgtac ggaacgtacg tgagaatgag aaattacgaa acaatagccc aaccgagcac        60
     gacctgcatc atcagtacga aacgcatcct gttcatcaaa cggagcgagg aactcaccca       120
     atgtcaacat ctgatatggc ccaccctaca tacaccgctg tacctgtgag ttcctgcagt       180
     aacagtgagt gacaccagtg agtgccgctg agcgattccc gccgtcatca ccgtcatcat       240
     catggctctc accactgcag cagcgtgcgc atcgcgaaca gtctggaaca cgtgtcgcgg       300
     ttgcgcgaga actttctcga tgtactcagt acgagtataa atacacggag ggaaacgctt       360
     gcggatcagt tttatttcaa ccgtcgcgga atttatatcg tcgtgaaaag tgaaagtgaa       420
     aagtaaagta gaagtaaagt gtaaaagtgc agtgaagagt aaaataaagt agtgcagtag       480
     tagtttggaa agaagtgttg tgtcgtttct ttcattccga ccgccccgtg atacagtcca       540
     cccgacccga ccggagttgg ccacggtgaa cagcgccatc a                           581
//
ID   BEL-744_AA-I repbase;    DNA;    INV; 6460 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-744_;
KW   BEL-744_AA-I; BEL-744_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6460
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6460
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 619-619 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           581..5986
FT                 /product="BEL-744_AA-I_1p"
FT                 /translation="MSPSLRTLSRQERFYLDTMTNMKHFVENFNAERDRGQ
FT                 LEGWKQRAESLYNDFQANRLKIELYGDESGRLETDEEGMRVTEEANRLIRQ
FT                 RFENDFVRVHSFLTTEIRKLTTPTQAVVPTTSRDSVNVQDSPYSRIKLPEV
FT                 KLPTFSGCVSEWISFRDTFKSLIDSNPQLSPIDKLSYLVASLSKDAKKVIE
FT                 SVEHTAANYSVAWTLLERRFDNKKLVVKTYIDHLFAIEPMKRECYESLMHL
FT                 VDDFERNLCMIDKMGIQTNGWSVLLAHMVCSRLDPSTLKQWETHHKSTEVP
FT                 KYEDIIQFLRTHLTVLQSLTPSKSRSFEPAKAELFRPQKPKINTVHTITTT
FT                 SSSSGACPFCSKPPHSPFKCEVFQKLSVAQRFEQVKKKNLCINCFSSSHLL
FT                 RNCSSSACRVCSQKHHTMLHQQSQDRSPTPKPPTSAVSSQSSPSSQGNQPS
FT                 PSNQSAHARPPSTAEPQSPSANASTLVSTTLVGSSRNVPATVLLQTAVIKI
FT                 FDNHGQPQFARALLDPASQLSLVTENLVQKLQLHRFSDRQEIGGVGNSIVV
FT                 SYHAVFVRMGSRCSDFVADARCNVLKKITRELPVRCIDTSPWNIPSNLTLA
FT                 DPQFHEPGPIDILIGMEIYYDLLLEGFIKLGPEKPILQNTVFGWVASGKVG
FT                 SNQIHECVPKLAHVTSAESLNEQLSRFWEIESCWTSSTHSVEETLCEEHFA
FT                 TNVFRDQSGRFVVTLPKRPSILNKLGSSKDIASRRFLALERRLQANPKLMN
FT                 AYSAFIDEYHQLNHMQEVCDEDASASCTSYYLPHHGVEKADSTTTKLRVVF
FT                 DASCSTDSGISLNHALMVGPVIQDDLLAIILRFRMHRFVIIADIEKMFRQI
FT                 RVHPMDYPLQRILWRDSPSQPLRTFELTTVTYGTAPAPYLATKCLQQLSKD
FT                 GSDEFPLASVILAKDFYMDDMLTGVDDEDEGEEACQQLLQLLKSAGMSLRK
FT                 WTSNSPAILSKIPLELRDERTSLSLDSSSAPIKTLGLQWQPSDDVFRYSAP
FT                 KWSQDGPISRRIVLSDTARLYDPLGLIGPVVVLAKLFVQTLWRTSKNWDDP
FT                 LNESEQQHWLEFRSSLEELATISIPRWAAPASVLVSIEVHGFCDASEKAYG
FT                 ACLYLRTVSTDGTIAVRLLAAKSKVAPLGDSKKQKRICLPRLELSSALLLS
FT                 HLYHKVQESTALNVKAIFWTDSMITLHWLRSTPSRWKTFIANRVSEVQHLT
FT                 ASGIWAHVPGIENPADIISRGMYPGQLQETQSWWIGPQWLSQPSRFWPPLT
FT                 PQLPSDFPNEQLEERAVSLPVQVHPPSEIFSIRSSFPALVRIVALLRRFVH
FT                 NTNPINRLNRLNGFLRTSELAEATAHLVRLAQQEAFAKDIKAIGKQGQVDS
FT                 NSDLRTLAPILVEGILRIRGRLRNANISEDRKHPIILPARHPLTRSIVSYY
FT                 HLKNLHAGPQLLAACVREKFWPLRLRDLARSVVHSCVSCFRCRPRNLEQIM
FT                 GDLPPERVIPTLPFLNTGVDLCGPFMYRRTRKAPPIKGFVAIFVCLVTKAI
FT                 HVELVYDLSTAAFMAALHRFIARRGKPNLIECDNATNFKGAARELKELAKQ
FT                 FRSQQHQGEIVNHCADEGITFKFIPPRSPNFGGLWEAAVKSFKLHFRRTVG
FT                 NSVLSQDEFVTLLTRIEACLNSRPLTPLSTDPNDLEVLTPGHFLVHRPLTC
FT                 FPEPDLTDVPRNRLDRYQTNQELLRRIWKRWTTDYLSGLHPRTRWTRIRDN
FT                 IVIGTMVLLKEDDLPPLKWKYGRITNIFRGDDGNIRVVDVRTADGEYRRGI
FT                 AKICVLPIRQPTTEPVAPADNTLDDSSIVVQ"
XX
SQ   Sequence 6460 BP; 1626 A; 1716 C; 1489 G; 1627 T; 2 other;
     tttctggtcc tggtcgagcc ggatcaaccg tttagtgacc cgaaaaaacg gtaatcgatt        60
     cggacatttc gattcgcggt wcgtcggttg tcgaatagtg aacattcgcg acacgtcacg       120
     agacgttgcw agtgactttc tgcaagtgaa attgcgaaca ttatctgccc cagagcgggt       180
     taattaaagt gcgcgaaaga tcgatcgtta attaacatcg atctcgttag tgtcgttgga       240
     gtattggctg gcctgtggtg ctgcatgtgc tggatccagc atctagcgtg gtccccattg       300
     tgcgaggaag gtaggctggc ttggcttggt tccgcattgt tctacagcgg acaataggac       360
     gtcggtcaaa ggcaccagat cgccacgttt ttgtgagtag acaccttgtt agtttaacaa       420
     attttgttgc gaggaaactg atagtggctt cgtttgcttt catcccgtgt gagctagttg       480
     gttggtggct aggtgctctg gcattcaaat tggtcggtgg ttttgttttg cacgtaggtg       540
     aggagttgag tgattgattt cggtcgtcga ggcgtggaaa atgtcgccga gtttgaggac       600
     actttcccgc caagagcggt tttatctgga caccatgacc aatatgaagc actttgtaga       660
     aaatttcaat gctgagcgcg atagaggaca gctcgaggga tggaagcaac gagcggagtc       720
     tttgtataac gattttcagg ccaatcgttt gaagattgag ctgtatgggg atgagtccgg       780
     tcggcttgag acagatgaag aaggtatgag agttacggaa gaagccaatc gtctcattcg       840
     acagcggttc gaaaacgatt ttgtgcgggt ccacagtttc cttaccactg aaattcgcaa       900
     attaaccaca cccacgcaag cggtcgtccc tactacttct agagacagcg taaatgtaca       960
     agatagccct tactcacgaa taaagctccc agaagttaaa ctcccgacat tctctggttg      1020
     tgtttcggaa tggatatcgt ttcgtgacac cttcaaatct ctcatagact caaatcccca      1080
     gctatcgcct atcgataaat tgtcgtatct tgttgcttca ctttccaagg atgccaagaa      1140
     agttattgag tccgtcgagc acactgctgc aaattattcc gtcgcatgga ccttgttgga      1200
     aaggcgattc gacaacaaga aattagttgt gaaaacctac atcgaccacc tgttcgcaat      1260
     cgagcctatg aagagagagt gctatgagtc tcttatgcac ctggtggatg atttcgagcg      1320
     aaacctgtgc atgattgaca agatgggcat tcaaactaac ggatggagtg tattgttggc      1380
     acacatggtg tgtagccgac tggatccgtc cacactaaag cagtgggaaa cccaccataa      1440
     atcaacagag gttcccaaat acgaagatat aatccagttt cttcgtactc atctaacggt      1500
     gctccaatcg ctgacaccgt cgaagtctcg ttcgttcgaa cccgctaaag ctgaattgtt      1560
     tcggccacag aaacccaaaa ttaatacagt ccacactatc actaccacca gttcgtcatc      1620
     cggtgcttgt ccgttttgct cgaaaccgcc ccactctccc tttaaatgtg aggtgttcca      1680
     aaagttgtca gtcgcccaac gtttcgagca agtgaagaag aaaaacctct gcatcaattg      1740
     tttctcctcc tcccacctac ttagaaattg ctcctcaagt gcctgcagag tatgtagcca      1800
     gaagcaccac actatgctcc accaacaatc gcaagatcgc tcacccaccc cgaaaccacc      1860
     cacttctgct gtcagttcgc aatcgtcgcc gtcttctcaa ggcaatcaac caagcccatc      1920
     aaatcagtcc gcacacgctc gacctccgtc gacagcagaa ccccaatcgc catcagccaa      1980
     tgcctctacc ctcgtatcta ccactctcgt cggaagttcc cgtaatgttc ctgccactgt      2040
     gttgctgcaa actgcggtca tcaagatctt cgacaaccat ggacagccgc agttcgcacg      2100
     agctctttta gatcctgctt ctcaactgag cctggttacg gaaaatctcg ttcaaaaact      2160
     acagttacat cgcttctccg atcgccaaga aatcggaggt gtgggtaatt ctatcgtcgt      2220
     ttcgtaccat gctgttttcg tccgaatggg ttctcgctgc tcggatttcg tcgctgatgc      2280
     acgttgtaac gtcctgaaga agattactag ggagttacca gtcagatgca tcgatacttc      2340
     gccatggaac attccgtcaa atctcaccct agctgaccct cagttccatg aacctggacc      2400
     tattgatatc ctgatcggca tggaaattta ctacgacctg ttgcttgaag gtttcatcaa      2460
     attgggtcct gagaaaccga tcctacagaa caccgtcttt ggctgggttg cttccgggaa      2520
     ggtcggatcc aatcaaattc atgagtgtgt acctaagctc gctcatgtca ccagtgcaga      2580
     atctctcaat gaacaactgt cccgtttttg ggagatagaa tcctgctgga ccagcagtac      2640
     tcattcggtt gaggaaaccc tgtgtgaaga acacttcgct accaacgtct ttcgagatca      2700
     atcgggtcgc ttcgtggtta ctcttcccaa acgtccgtcg atccttaata aattagggag      2760
     ctcgaaggat attgcaagtc gtagatttct tgctcttgag cgtcgtctgc aagccaatcc      2820
     aaaattgatg aacgcctact cagctttcat cgacgagtac caccagctta accacatgca      2880
     agaagtatgc gacgaggatg cttcagccag ctgtacttcg tattacttgc cgcatcacgg      2940
     tgtcgagaag gcagatagta ccaccacgaa attgcgggta gtgtttgacg catcctgctc      3000
     aactgatagc ggtatctcac tgaatcacgc gcttatggtt ggtccagtca tccaagacga      3060
     cctgttggca atcatcttgc gttttcgtat gcatcggttc gtcatcattg cggacattga      3120
     aaaaatgttc cgccagattc gagttcatcc aatggattac cccttacaac ggattctctg      3180
     gcgcgattct ccttcccaac ccttacgcac cttcgaactc acaacagtga cttacggcac      3240
     agcccctgcc ccatatttgg caaccaagtg ccttcaacag ttgtccaagg acggttcaga      3300
     cgaatttcct ctcgcttcgg tgatcctagc aaaggatttc tacatggacg acatgttgac      3360
     cggcgtcgac gatgaagacg aaggtgaaga agcctgtcag cagcttctac agctgctgaa      3420
     atctgctgga atgagcttgc gaaaatggac gtcgaattcg ccagctatac tctccaagat      3480
     ccccctggaa cttcgcgatg aacgaaccag cctttcgcta gattcttctt ctgctccaat      3540
     caagacattg ggactacaat ggcagccatc agatgacgta tttcgctact ccgctcccaa      3600
     atggtctcag gatggaccaa tttcccgtcg aattgttctg tccgacaccg ctcgactgta      3660
     cgaccctctt ggactgatcg gtccagttgt agtgcttgcg aagctattcg ttcaaactct      3720
     ctggcgcacc tccaagaact gggacgaccc actaaatgaa tctgagcagc agcattggtt      3780
     ggagttccgt agcagtttag aggaattagc aacaatcagc attccaagat gggcggcacc      3840
     tgcttccgtg ctcgtatcga ttgaagttca tgggttctgc gacgcctccg aaaaggcata      3900
     cggagcctgt ctatatttaa gaaccgtttc gaccgacgga acgatcgccg ttcgcctact      3960
     agctgccaag tctaaggtag cgccactggg tgactcgaaa aagcagaagc gtatctgctt      4020
     gccaagattg gagctctctt cggcactctt gttgagccat ctctaccaca aggttcaaga      4080
     aagtacagcg ttgaacgtca aggccatctt ttggacagat tcaatgatca ctctccactg      4140
     gctgcggtcg acaccatcgc ggtggaaaac tttcattgcg aatcgtgtgt cagaagtgca      4200
     gcatctcacc gccagcggta tttgggcgca tgttcctggc atcgaaaatc ctgcggatat      4260
     tatctcccgc ggcatgtatc caggccagct gcaggaaact caatcctggt ggatcggtcc      4320
     gcaatggctt agtcaaccgt ctcgattttg gccacctcta acgccccagc tgcccagtga      4380
     ttttccaaac gaacaactag aagaacgagc tgtttcgcta ccggtgcagg tgcaccctcc      4440
     aagcgaaatc ttctcaattc gatcatcatt tccagcactc gtgcgtatcg ttgcacttct      4500
     acgtcgcttc gtccataaca ccaacccaat caaccgttta aatcgactca atggtttcct      4560
     gcggacttcg gaacttgctg aagctaccgc tcatctagtt cgcctagcgc aacaagaagc      4620
     tttcgctaag gatatcaaag ctataggtaa acagggccaa gttgattcta attcggatct      4680
     tcgcacgctt gctccaattc tcgtcgaagg gattctccga ataagaggcc gactcagaaa      4740
     tgcgaacatc tccgaagaca gaaagcatcc tatcatcctg ccagcacgac atcctctaac      4800
     tagatcgatt gtctcctatt accacctcaa gaatctacac gccggacctc agctgcttgc      4860
     ggcatgcgtc cgagagaagt tttggccgct tcgactccga gatttggcac gaagtgttgt      4920
     gcactcttgc gtaagttgtt ttcgctgccg tcctcgtaac ctcgagcaga tcatgggaga      4980
     tttgcctcca gagagagtta ttccgacgtt acctttcctt aacaccggag tagatctctg      5040
     tggaccgttc atgtaccgca gaacgagaaa ggctcctccc ataaagggct tcgtagctat      5100
     cttcgtgtgc cttgtaacca aggctattca tgtagaactt gtctacgacc tatctactgc      5160
     ggcgttcatg gcagcattgc atcggtttat tgctcgaaga ggaaagccga acctaataga      5220
     gtgtgacaat gccacaaact tcaaaggagc agcgcgtgag ttgaaggaac tggccaagca      5280
     gtttcgctct cagcaacatc aaggggaaat tgtcaatcac tgtgccgatg aaggcatcac      5340
     cttcaaattc attccgcctc gcagcccaaa ttttggcggg ttgtgggagg cggccgtcaa      5400
     gtcctttaag ctacattttc gtcgaaccgt tgggaactcc gtcctctctc aggatgagtt      5460
     cgtcactcta ctgacccgca ttgaagcctg cctaaactct cggccgttga ctccactttc      5520
     gaccgatccc aacgacttgg aggttttaac cccaggtcac ttcctcgttc accgtccgtt      5580
     gacttgcttc cctgaacccg atctcacgga tgtaccacga aaccgactgg atcgctacca      5640
     aacgaatcaa gaacttctcc ggcgtatctg gaaacggtgg accacagact acctctctgg      5700
     tcttcacccg cgcaccaggt ggactcgcat tcgggacaac attgtcatag gaacgatggt      5760
     actcctgaaa gaagatgacc tgccacctct gaagtggaag tacggaagga tcaccaacat      5820
     tttccgtgga gacgatggca acatccgggt agtagacgtc cggacagcag atggagagta      5880
     tcggcgcgga atcgcaaaga tttgcgtgct tcccatccgt caacccacaa ccgaaccggt      5940
     cgccccggct gataacaccc tagatgactc ttccatcgta gtacaatagt actgcgcaac      6000
     gatcggaggc cccagggcct ccgaaccctg taagtatgtt tttataatga aatttcaaaa      6060
     aactaatgga atgtttgtac tccggcatgt cctgcgcatc gatggctgct ccgatggtct      6120
     cccattgagt acgcccaacc cgatgacatc gagatgaacc ataagatcaa cccaatcgaa      6180
     ccccgagtgt atcacaacaa gaggactccc gatgacgtca caaccaccca caagatatcg      6240
     tccgtagtag caccatcacc gatcaatagc gcagtcgaaa ggtagtctga ttaccaccga      6300
     ggtcgctgac ctacgttgtt tagaagagga accaaaacag accggcgagt cttccgaagt      6360
     gtgacgaaat agtcgacaac gattggcaac caattctcat ctctcagcat cattggtatt      6420
     agtctgtttg aaaggatcga cctttcaaca ggggccggca                            6460
//
ID   BEL-744_AA-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-744_AA-I;
KW   BEL-744_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-408
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 572-572 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 408 BP; 112 A; 106 C; 68 G; 116 T; 6 other;
     tgttggagcc accctagatt taagagcgtt aatatctccc aatttgcaat attctcttgt        60
     actaaaacca gtgataacag tatccatctc attcgttcca attagcctat attaccagtt       120
     atcactcttc cttatcacta gccttcagct agtgagagaa atacgatccc gatctacatt       180
     cggataggcc tttttcctga actgaattcc catataaacc tatatgcaaa gcagtatcga       240
     gttagtcgaa aatawatctc aaaccatacg catcgctgta tcccatattc mgttcgccaa       300
     taaattccgt ctcgcggtag tccgcmmaag twacgtgccg tgtcgaatta gtgctgtgag       360
     agaagcaaac cccagctawt cggtcttccc aactccgccg cggttaca                    408
//
ID   BEL-745_AA-I repbase;    DNA;    INV; 6080 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-745_;
KW   BEL-745_AA-I; BEL-745_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6080
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6080
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           452..5770
FT                 /product="BEL-745_AA-I_1p"
FT                 /translation="MSTERRIKLLKTKQKSFITSFVLIKTFVDDYEEDRDA
FT                 DEIPVRLENLIELWREFKQVQSELETLDEASVDDHLKRRTDLESVYYRVKG
FT                 FLLSHNKTPATPHLNNSSSIPQIPAQPSHVRLPDVKLPVFNGNLDSWLNYH
FT                 DLFVSLVHASPELSSIQKFYYLRSSLAGDALKLVQTIEISANNYPVAWNML
FT                 VDHYQNPARLKKTYLDALFEFSTLKRESAVELHSLVENFEANVKVLKQLGE
FT                 RIEHWDIILIRMLSVRLDSTTRRDWEEFSSTRAVVSFKDLTSFIQRRVTVL
FT                 QTLNGKAVDTPAISQASKKPFQRIVSSHGASQSIPNRKCVVCSDHHPLYLC
FT                 HLFSKLDLEGKEREVRRHQLCRNCLRKGHQVRECPSSSTCRYCRSRHHSQL
FT                 CTKEHSSANSRETEPCCPPSSPSSASSRQQPKVSNSASIDVPTSYASTGRS
FT                 PKSVLLATAVVKLIGDDGTEHTARALLDSGSECCFITESLSQLIKATRTKI
FT                 SVPISGIGQSSTYARYKIVASIHSRISSFSTSTEFLVLPKVTINLPSASFD
FT                 VSAWKIPSGVQLADPFFHEANPIDIIIGAEVFFDLFKVSGRIPLGESLPTL
FT                 VNSVLGWIVSGKTSQDSQKPSVIANVAAVGDLHQLIERFWAIEEDDKAPNY
FT                 SVEEAACEEHFRQNVRRNSEGRYIVRLPLKHNVIQQLGDNRRTAIRRLRML
FT                 EGRLGRNPQLAQLYTAFIDEYLALGHMKQVFDYQSPPSPCYHMPHHAVIRE
FT                 HSTTTKLRVVFDASCKTADGPSLNDALLVGPTVQQDIRCIIMRSRIRRVMI
FT                 IADAKQMYRQILVDERDTPLQRIVWRNAPEQPLITYELQTVTYGTASAPFL
FT                 ATRVLVQLANDEQQQFPVAAEVVRKDFYVDDLFSGADSVEEATELRGQLET
FT                 LLLKGGFQLRKWASNEEAVLKDVASDNRALQASVDLDRNQTIKSLGLHWIP
FT                 ATDQLKYQIHLPTVSSEASLTKRIALSQIARLFDPLGLLGPVVITAKIFMQ
FT                 TLWTLKANNGKVWSWDEELPLKLKEQWRSYMYELPILNNLRIGRYILSSRP
FT                 AFIQYHFFSDASQHAYGACCYVRSADTSGSFTVALLTAKSRVAPLKQLSIP
FT                 RLELCGALLAAELYQKVSQSLELPGATFFWVDSTTVLSWLQATPSSWTTFV
FT                 ANRVSKIQHATQHCTWHHIAGQENPADLLSRGITADNLIDNHLWWHGPKWL
FT                 QLAQTSWPIERNELKQNIEPLSEVERRKQSSYQASPETSFIDLYVQRFSNY
FT                 ERMLRVTAYCRRFIQQCRRQSAGETVTNHITTDEKLSAEGTLVRLVQQQTY
FT                 PEEWKQLLNSKPVSSKSRLRWFHPFIAHDQIIRIGGRINQAPQPYNSKHQI
FT                 LLPASHALSSLLIRSYHERHLHAAPQLLVAVLRQRYWITGARNLARFLVRN
FT                 CVTCVKARPLLLEQFMSELPVSRVTATRPFSTTGVYYWGPITLRPTHRRGA
FT                 SQKAYVAVFVCFSTRAVHLELVIDLSTAKFLQALRRFVARRGICQQIYSDN
FT                 GRNFVGAANELRKLVRSKEHHQAIAQECSNIGICWKFNPPKASHFGGLWEA
FT                 AIRSAQKHFIRVLGTHVLAQDDMETLLVQIECCLNSRPIVPLSEDPSDLEP
FT                 LTPGHFLVGSALKAVPDSDVTDIPLNRLQHWQQTQKIFQLIWKRWHMEYLA
FT                 TLQTRSKWCNPPIIIQRNQLVLLRDENTPPMTWPTGRIVDLHPGVDGVTRV
FT                 VTVQTSTGRYIRPVSKICLLPIPPTQSDPASTAASMSSSPNSENSTSKGNQ
FT                 QQ"
XX
SQ   Sequence 6080 BP; 1656 A; 1594 C; 1267 G; 1563 T; 0 other;
     tctggtcctt cgaaccggat tgcgtcgtcg agactccggc caatccagac tgtgtgtgga        60
     aatacgcgcc gccataacga ttgagggacg agccacgacc gatcgagacg ccatcgtagc       120
     cattgaagcg atacgccatc attgccattt ggatataata caaggcttga tcttgccttg       180
     aaaaaggtaa ttagatttcc aatcaaatca ctctaaccca ttggagctac gcggtctttt       240
     gatttgcaga ccaggctctc ctgtgaaccc agcacacccc acattttcgt attccggagg       300
     ttcatctgtg aactgcactc cggccccgcc ggattgaaat catttgtaca aggcacggaa       360
     ttgccttacc tcaggtaatt ggcattccat tcttcctcac gttttcccgt gtgatctacg       420
     cggtctatca tttccagaac cgccggtcag catgtcgacg gaacgcagaa ttaaattgct       480
     taaaaccaag caaaaaagct tcatcacatc ctttgtcctc atcaaaacct tcgtcgatga       540
     ttacgaggag gacagagatg cggacgaaat ccccgtacgc ctggaaaatt taattgaatt       600
     atggagagag ttcaaacaag ttcagtccga actggaaacc cttgatgaag cttctgtcga       660
     tgatcatctt aagcggagaa ccgatttgga atcggtttat tatcgagtaa aaggattcct       720
     tctctcgcac aataaaacac ctgccacgcc tcacttgaac aattcttcct cgataccgca       780
     aatccctgca cagccatccc atgtacgttt acccgatgtc aaattaccag tcttcaacgg       840
     aaatctcgac agttggttga attaccacga tcttttcgta tcactggttc acgcttcgcc       900
     ggagttgtcg tctatccaaa agttctacta tctacgctct tctttggccg gagatgccct       960
     caaattggtc caaaccatcg aaatcagcgc taataactac cctgttgcct ggaacatgtt      1020
     agtcgatcat taccagaacc ctgcccgctt gaagaaaacg tatctcgatg cactttttga      1080
     gttcagtaca ctaaaacgag agtctgcagt agaattgcac tcactggtgg agaatttcga      1140
     agccaacgtc aaggtcttaa aacagctcgg agagcggatt gagcattggg acatcatact      1200
     aatccgaatg cttagcgtac gcttggactc cacaacccgg agggattggg aggaattctc      1260
     gtccaccaga gcagtagttt cattcaagga tttgacgtcg tttatccaac gcagggtaac      1320
     tgttcttcaa acgctcaacg gaaaagctgt cgacactcca gcaatttccc aagcatcgaa      1380
     gaagccattt cagcgtatag tttctagcca cggagccagc caaagcatcc ccaatcggaa      1440
     atgcgttgta tgttcagatc accatcctct ctatttatgt cacttattct cgaagcttga      1500
     cctagaagga aaagaaaggg aagttcgtcg acatcaactc tgccgtaatt gcctacggaa      1560
     gggacatcaa gttagagagt gtccatcatc cagtacttgc cgatattgtc gtagtcgcca      1620
     tcactcccaa ctgtgcacta aagaacattc ctctgcgaac tccagagaaa ctgaaccttg      1680
     ctgtcctcca tcttctcctt catctgcatc atctcgtcaa cagccaaaag tatccaattc      1740
     agcaagcatt gatgtaccta caagctatgc aagcaccggg cgatctccga agagcgtatt      1800
     attagcaact gccgtggtca aactgatcgg tgatgacggc acggaacaca ctgccagagc      1860
     actgcttgat tccggcagcg aatgctgttt tataacagag tctctttcac aacttattaa      1920
     agcaacacga acgaaaattt ctgttccaat atctgggatt ggccaatcgt caacctacgc      1980
     acgatataag atcgttgctt caattcactc tagaattagc agcttttcca cctccaccga      2040
     gtttttagtg ttgcccaagg ttaccatcaa tctaccatct gcttcatttg atgtttccgc      2100
     ttggaaaatc ccttctggtg tgcagcttgc cgacccgttc ttccatgaag caaatccaat      2160
     cgatatcata atcggcgctg aggtattctt tgacctcttc aaggtttcag gacgcattcc      2220
     acttggtgaa tcacttccga ccttggtgaa ctccgttctt ggttggatag tatccggaaa      2280
     gacgtcgcaa gactctcaaa aaccttcagt cattgcgaat gtggcagcag taggagacct      2340
     ccatcaactt atcgaaagat tctgggcaat cgaggaagac gacaaagctc ctaactactc      2400
     ggtggaagaa gctgcctgcg aggaacactt tcgacaaaat gtgaggcgaa actccgaagg      2460
     aagatatatc gttcgcttac ccttgaagca caacgtgatt caacagctcg gcgacaatcg      2520
     tcgaactgct atccgtcgtt tacggatgtt agaaggccga cttgggcgta atccgcaact      2580
     tgctcaactg tatactgctt tcattgacga atatcttgcg ctgggtcaca tgaagcaagt      2640
     cttcgactat caatctcctc cgtcgccatg ctatcatatg ccgcaccacg ctgtaatacg      2700
     agagcacagc actactacga agctgcgagt agtgtttgat gcgtcttgta agactgcaga      2760
     tggaccttct ctaaatgatg cactattggt tgggcctacg gtacaacaag atattcgatg      2820
     cattattatg cgctcgagga ttcgccgagt catgataatt gctgacgcca aacaaatgta      2880
     ccggcaaatt cttgttgatg agcgcgatac tccgcttcaa cgaatcgtct ggagaaatgc      2940
     tccagaacaa ccactgatta cctacgaact ccagacagtc acgtacggca ctgcaagcgc      3000
     tccttttctc gcaactcgcg tgttggtcca attggcaaat gacgagcagc aacaatttcc      3060
     agtggccgct gaggtcgtac gcaaggactt ctacgtagat gatctcttct caggcgcaga      3120
     tagtgttgaa gaagccactg agcttcgtgg acaactcgag actcttttac tgaaaggtgg      3180
     attccagctc cgcaagtggg cgtccaacga agaagctgtt ctgaaggacg ttgcatcgga      3240
     caatcgagcc ctgcaagcat cagtcgatct tgatcgcaat caaactatca aatcacttgg      3300
     attacactgg atacctgcaa cagaccaact gaaatatcaa atccatcttc caacagtttc      3360
     gtctgaagct tcgctcacca agcgtatagc tttatcccaa attgctcggc tttttgatcc      3420
     ccttggcttg ctgggtccag tagtcatcac agctaaaatt tttatgcaga ccctgtggac      3480
     attgaaagct aacaacggta aggtttggag ctgggacgag gagcttcctc taaaattgaa      3540
     agaacaatgg cgttcataca tgtacgaact tccaatattg aataatcttc gaattggacg      3600
     ctacatcctg tcatcgaggc cagcattcat tcaatatcac tttttttccg atgcctctca      3660
     gcacgcatac ggtgcgtgtt gctacgtccg atctgcagac acgtctgggt cattcacggt      3720
     agccctccta actgccaaat ccagagttgc tcctcttaaa cagctgagca ttcctcggct      3780
     agaactttgt ggagctcttc ttgcagctga attataccag aaggtttcac aatccctcga      3840
     acttcctggc gctacgtttt tctgggttga ctctaccaca gtactcagtt ggttacaggc      3900
     gaccccgtca tcatggacta cttttgttgc gaaccgagtg tccaaaatac agcacgcaac      3960
     gcaacattgt acatggcatc acattgctgg acaggagaac ccagcagatc ttctgtcacg      4020
     tggtattaca gctgataatc ttatcgataa ccatctctgg tggcacggac cgaaatggct      4080
     acaacttgct caaacttcat ggccaatcga acgaaacgaa cttaaacaga acattgaacc      4140
     actatcagag gtcgaaagac gaaagcaatc tagttatcaa gcatcacctg aaacttcatt      4200
     tatcgatctc tatgtgcaaa gattctcgaa ctacgaacga atgttacgag tcaccgccta      4260
     ttgtcgccga tttattcaac aatgccggcg tcaatctgca ggcgaaacgg taacaaatca      4320
     cattacaacg gacgaaaaat tatcggcaga agggacactc gtccgactag tccaacaaca      4380
     aacctatcca gaagaatgga aacagcttct aaattcaaaa cccgtttcat cgaaatctcg      4440
     tttacgctgg tttcatccat tcatcgctca cgaccaaatc attcgtattg gagggcggat      4500
     caatcaagca ccacaacctt acaacagcaa acatcaaata ctgcttccag cttctcatgc      4560
     tttatcctca ttgctgattc gctcgtacca tgaaagacat ttgcatgcag ctcctcagct      4620
     tcttgtcgct gttcttcggc agcgatactg gattacaggg gccagaaatt tggctagatt      4680
     cctcgtacgc aactgcgtta catgcgtcaa agctcgcccc ttactcctag aacaatttat      4740
     gtcggaactc ccagtatcac gcgtcaccgc tactcgaccg ttttctacaa caggcgttta      4800
     ttactgggga cctatcacat tgagaccaac acatcgtcga ggagcttccc aaaaggcata      4860
     cgttgcagtt tttgtctgct tttcgactcg agcggtgcac ctagaactcg tcatagattt      4920
     gagcaccgca aagtttcttc aggcactgcg tcgttttgtg gctcgccgag gtatttgcca      4980
     acaaatctac agcgacaatg ggcgcaattt tgttggagcc gcaaatgaac ttcgcaaact      5040
     agtccgtagt aaggaacacc atcaagctat tgcccaagag tgctctaaca tcgggatctg      5100
     ttggaagttt aaccctccga aagcatcaca ctttggcggc ctatgggaag ctgccatccg      5160
     ctccgcacaa aaacatttca tccgcgtttt aggaacccat gtccttgcgc aggacgacat      5220
     ggaaacactt ctagtccaaa tagaatgttg cctcaattct cgtcctattg ttccactgag      5280
     tgaggatcca tccgacttgg aaccactgac gccgggacat ttccttgttg ggtctgcttt      5340
     aaaggccgtt cctgattccg acgtcacgga cataccactc aatcgattgc agcattggca      5400
     acaaacgcaa aaaattttcc agcttatctg gaaacgatgg catatggagt acttagcgac      5460
     tcttcaaacc cgctcgaaat ggtgtaatcc tccaatcatc attcagcgaa accagttggt      5520
     actccttcga gatgaaaaca caccaccgat gacctggcca acgggcagaa tcgtggattt      5580
     gcatcctggc gtagatggag taactcgggt cgtcacagtg caaacatcca ccggtcgata      5640
     cattcgtcct gtttcaaaaa tttgcctgct gcctattccg cccacgcaaa gcgatccagc      5700
     atcaacagca gcctcaatgt cgtcatcacc aaacagcgaa aatagtacct ccaaaggcaa      5760
     tcagcaacag taagctaatc ccatccatct ccacgtccta gcagcaaaca tccgtcactc      5820
     cttgttcctg tctggatcac ctacgaaaat gattcaaagc ccttattcta agggacaagg      5880
     taagaacctg tccgataaat ttcagtttta ccgttaaccg ctaccgggtc tgttttgttt      5940
     tggttccttt cttctgtgct gcgccggtga gacaacgatt gacatttacg aaacgtcatc      6000
     agaactgcgg taggtgaagt catcatcgtc atcatcattg aggaaactat cagaaatatc      6060
     catttctgaa ggggccagca                                                  6080
//
ID   BEL-745_AA-LTR repbase;    DNA;    INV; 557 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-745_AA-I;
KW   BEL-745_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-557
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-557
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 595-595 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 557 BP; 189 A; 98 C; 119 G; 151 T; 0 other;
     tgttcgcaag cgaaaaccac acggaaaata agggaaacga aattgtatta gcgcgcccat        60
     tgtgtttatc cttcatcgag cgatagcacc attaatcttc gttcatcgac ggtggtcctg       120
     tagaaagagg tgttgtcgga tcatctctgt ctatccggtc aacttcaaga tggaggaacc       180
     atggtgatgt ataaaaggcc gaattgtcat cacgggaatt ctcttttacg acaacttcgt       240
     caacatcatc gatcgacaac gaagcagtga ataataacaa gtgaagaatt gaatttgagt       300
     gcgattataa tagttgaaat taaagttaag aagattaata aagttaagtg agttatttaa       360
     tgaacctgtg aaataaagtg tagttaatag aaataaactt acctgtgtag ccgccattga       420
     actgtagtgc ctgaaagaaa cctgaaaaga aatctgaaaa ggagagaata tacttaccat       480
     attggaaacg tccccgtcgt gcttcgcatc tgtgaatttg agcacagaat tactgttacc       540
     cactgagtga ttcaaca                                                      557
//
ID   BEL-746_AA-I repbase;    DNA;    INV; 5838 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-746_;
KW   BEL-746_AA-I; BEL-746_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5838
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5838
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 631-631 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           442..5814
FT                 /product="BEL-746_AA-I_1p"
FT                 /translation="MSDTFNPYQFARECIEMPLDRTPSKSDKQGTMQDIST
FT                 LVFHRGQAKAQVTKIRKALDGMAGAGSDPPNMAMLAVYSKKLDRFYEEYRQ
FT                 YHEQIIGLISDERMDEQIEAYDLFETQHTETCALLEAIMQSITATPNYAQG
FT                 NTHQAQEPPRIIVQQQPLKAPIPSFDGKPENWPRFKAMFLDVMRTSADSDA
FT                 IKLYHLDRALVGTAAGIIDSRTLSQNNYAHAWKILEDRYEDKRVIVDIHIN
FT                 GLLELPKMHRENAKDLRALIDKVTQHVDGLSLLDEEMTGFSERFVVNLLAA
FT                 ALDKDTRLQWEASIPHKQLPNYKDTIDFLSNRCAVLERWEGSLAKPAATSK
FT                 SSVPVKYPGHQQRNTTSKSCAVTTKDRTCELCESGNHPGYKCEAFREMTVA
FT                 QRQAKVRSIRACFNCLRVGHVSSACSSSYTCSKCQAKHHTLLHPDKKVSQS
FT                 SQFDSQSASKLVSQSSQSDSSSTSKSVVPIAKNKCNSVEPQSTPTVSCSMK
FT                 QVPRVCTSLLMTAKVHVKDANGNLKTCRAFLDCGSQAHLVSKGLVKSLNLP
FT                 CFSTKVDVVGANGQQSSISEMVTLELRSCYSDFQGQLQCLVAGRVAGLMPS
FT                 VPIDIKQWNLPPGLPLADPDFHIPGEVDLLIGVQLFFSLMMPGQYKIADNL
FT                 PILQETRLGWVVAGSFEDVDTSRVEQHCYTVTLQNLADTMEKFWSVESVDS
FT                 CNLLTSEEQLCEEIFCSTTRRDPNGRYVVQLPLKESVHQMESNRSVALRRF
FT                 FMLEQRFQKDSDLKRLYVDFINEYKDLHHCELIDESQDPPNLLKYYLPHHA
FT                 VLKPSSSSTKLRVVFDASSKTKGPSLNDSLMIGPVIQNDLFSINLRFRSHR
FT                 YVFSADISKMYRQIQVDRAHTPLLRIFWRENPTDPLQVLELTTVTYGTSAA
FT                 PFLATRALQQLAFDECTRYPYAAQIVLEDFYVDDVLTGAETVEEAIQRRVE
FT                 LTELLSCGGFPIHKWCSNEPTILDTVPEKDREKFLSFEDSDINQAIKTLGL
FT                 LWDPAEDVYRFHLDLPSLNSSPPTKRNVLSQIAKIFDPLGLISPVVVFAKI
FT                 IMQQIWMSKLKWDDVLDGKLLQAWIMFRDTLSHIHEIKIPRYFGAVNSTRY
FT                 EIHGFADASSVAYGACLYIRVVTQDGVKLSLICSKSRVVPIKGLTIPRSEL
FT                 CAALLLVRLFLKLLPAVKLEFQSIHFWSDSQVVLAWLKKPLPQLNLFVRNR
FT                 VSEIVEGSSDADWNYVKSAENPADIVSRGQPPQLLVSNDLWWYGPQFLRNS
FT                 TYRIDEPELISDDQLPEWNPVANTYAMSVPESLPVMTAFESFRKLQRVIGY
FT                 VRRFVRNARSVKSQRITSRYLTIQEIRESMNVIVKYVQKSEFSDEICRLMS
FT                 NEPLRRLGSLGVMLKDDILRVGGRLRNATLPFGAKHQMLLPDKNPIVESLI
FT                 RTLHREMLHIGPSGLIAFIRQRFWLLNARSVVRKIIRSCVTCFRHSPQLLQ
FT                 PSMGDLPEVRVVPSPPFSKSGVDFAGPVFIRQGGRKSTLVKAYICLFVCMS
FT                 TKAIHLELVSDLSAAAFVAALHRFVARRGLVEELFSDNGSNFVGAKSELHS
FT                 LYQLFKSDQLQGKLNEFCHAREIKWSFIPPRAPNFGGLWEAGVKSTKTHLK
FT                 KVLRDASLTFEEYYTVLTQIEAILNSRPLFSSSSDPSEPEAITPGHFLIGR
FT                 ELTAIPEPTLEDTKINRLSRWQLVQQIRDHFWKRWSREYLNTLQTRQKWTK
FT                 GCKNVSPGMVVLLKEDNIPPQSWKLARIVNVFPGSDSVVRVADVQTVNGVL
FT                 RRPISKLAPLPIEQDLQLNA"
XX
SQ   Sequence 5838 BP; 1467 A; 1319 C; 1418 G; 1634 T; 0 other;
     tttttggtcc attcgagccg gatccccgag cgatccgcat ctgcgtgtcg tcaatctgac        60
     gattgagaca cccgtaccga tacagtccgc ttacctctgt cgccaatctg acgattgcga       120
     caaaattgtt gctgtgacga tagccgacgg agtcgttgga aaaaatattc cttggttgtc       180
     cgagagtgaa tcgaacgaag tgaacgaaag taagtcgcgc gcgagtgtgt cacagtgctt       240
     gtccgatatt ttaacccgca agtaaaccgc gcgcgagtga tcccggcgtg atcgcctagt       300
     gatatttcct ggacgtgtcc gaacacgttc tgttgcgtgg tgcgagggag cgcatcacag       360
     tacctgtgtg aaaagtgaaa gtgaaccagt tgtccgaaaa gttttaaccc gcaagtaaat       420
     cgcgcgcgtg tggtacagtg tatgtccgat actttcaacc cgtatcagtt cgcgcgcgag       480
     tgcatcgaaa tgccattgga tcgcacaccg tcgaaaagtg ataagcaagg cacgatgcag       540
     gacatttcga ctctggtgtt tcatcgtgga caggcgaagg cgcaggttac gaagattcgt       600
     aaggcgttgg atggaatggc tggagctgga tccgatcctc cgaatatggc tatgctggct       660
     gtgtattcca agaaactgga tcgattctac gaggagtatc gccagtatca tgagcaaatt       720
     attggtctca tttccgacga acggatggac gagcagatcg aagcgtacga tttgttcgaa       780
     acgcaacaca ctgaaacgtg tgcgttgctt gaggcaatta tgcagtcaat tactgccact       840
     ccaaattatg cacaagggaa tacacaccag gcacaggaac ctccacgcat aattgtacag       900
     cagcagccgt tgaaggcacc gattccttcc ttcgacggga agccagagaa ctggccacgc       960
     tttaaggcca tgttcctgga tgtcatgcga acatcagccg attcggacgc cattaagctc      1020
     tatcatttgg acagagctct ggtcggcact gctgccggga taattgattc gcgcacgcta      1080
     agccagaaca attatgccca tgcgtggaaa atcttggagg accgatacga ggacaagcgt      1140
     gtcatagtgg acatccacat caatggcctg ctggaactgc cgaagatgca tcgggagaac      1200
     gcgaaggact tgagagcgct catcgacaag gtcactcagc acgttgatgg attgagtcta      1260
     ctcgacgaag agatgaccgg attctccgaa cgcttcgtgg tcaatcttct ggcagcggca      1320
     ctagacaagg acacgaggct tcaatgggaa gcttccatac cccacaagca gctgccaaat      1380
     tataaagata caatcgattt cctgagcaac cgttgtgctg tgctggagcg ctgggaagga      1440
     tcgttggcca agccggccgc cacatccaag tcatcagttc cggtgaagta tcctggacat      1500
     caacagagga acacgacatc gaagtcttgt gctgttacta ccaaggaccg aacgtgtgag      1560
     ctgtgtgaat ccgggaacca tccggggtac aagtgcgaag ccttccgaga gatgacagtt      1620
     gctcaacgcc aagccaaggt aagaagtatc agagcttgct ttaattgcct tagggtgggt      1680
     catgtgagta gtgcgtgttc ttcgtcgtat acttgttcga agtgtcaggc aaagcatcac      1740
     actcttcttc atcctgacaa aaaggtgtcg cagtcctctc agtttgattc gcagtcagct      1800
     tcgaaattgg tttcgcagtc ctctcagtct gactcgtcgt ctacctcgaa atcagttgtg      1860
     ccaatcgcta aaaacaaatg taattccgtt gaacctcaat ctactccaac agtttcatgt      1920
     tctatgaagc aagttcctcg tgtatgtact agcttgttaa tgacagcaaa ggttcatgtg      1980
     aaagatgcga atgggaatct gaaaacttgt cgtgcatttt tggattgtgg ttctcaagct      2040
     catcttgtgt cgaaaggttt ggttaaatcg ttgaatctgc cgtgtttttc caccaaggtt      2100
     gatgttgtcg gtgccaatgg tcagcagtcc tccatctccg aaatggtcac gctggaattg      2160
     cgttcatgtt actctgattt ccaaggtcaa ttgcagtgtc tggttgctgg tagagttgca      2220
     ggtttaatgc cgtccgtgcc tatcgatatt aagcaatgga atctacctcc tggcctgcct      2280
     cttgcagatc cggattttca cataccaggt gaagtcgatt tgttgattgg ggtacaattg      2340
     tttttctcgc ttatgatgcc gggacagtac aagatagctg ataatcttcc cattctacaa      2400
     gagactcgtt tgggatgggt tgtcgccggt tcctttgaag atgttgatac ctctcgtgtt      2460
     gaacagcatt gttacaccgt aactctgcag aatcttgctg atactatgga aaagttttgg      2520
     tcggttgaat cagtggactc ttgtaacctt ctgaccagtg aagagcaatt atgtgaagaa      2580
     attttctgct ccactacgcg tcgtgatcca aatggtcgct atgtcgttca attaccgttg      2640
     aaagaatccg ttcaccagat ggaaagtaat cgttctgttg ccttgcgtcg ttttttcatg      2700
     ttggaacagc ggttccagaa ggattctgat ctgaaaagac tttatgttga ttttattaat      2760
     gaatacaaag atctccacca ttgtgaactc attgatgaat ctcaggatcc tcccaacctt      2820
     ttgaagtatt atcttccaca ccatgcggtg ttgaagccaa gcagctcttc aacgaagttg      2880
     agagttgttt ttgacgcttc atcgaagaca aagggccctt cgctcaacga ctcactcatg      2940
     atcggcccag taatacagaa tgatctcttc tcgataaatc ttcgctttcg ctcacatcgt      3000
     tatgtgttct ctgccgatat tagtaagatg tacaggcaaa ttcaagtaga ccgtgctcac      3060
     acaccactac ttcgaatttt ctggagagag aatcctaccg atccgttgca agtccttgaa      3120
     ttaacgacgg tgacgtacgg tacatctgct gctccattct tagctacgag agctcttcaa      3180
     cagcttgcct tcgatgaatg tactcgttac ccgtatgcgg ctcagattgt gctcgaagat      3240
     ttttatgttg atgatgtcct gacgggtgct gagaccgtag aggaggcaat tcaacgtcgt      3300
     gttgaactca ctgaactcct tagctgtgga ggttttccca tccacaaatg gtgttcgaat      3360
     gaaccaacca ttttggatac ggttccggag aaagacaggg agaagtttct gtcattcgaa      3420
     gactctgata taaaccaagc tatcaaaacg cttggcctac tttgggatcc agcagaggat      3480
     gtttatcgct ttcatttgga tctcccaagc ctcaacagtt ctccacctac caaacgtaac      3540
     gttttgtcgc agatagcgaa aatttttgat cctctgggac taatttcacc tgttgtcgta      3600
     tttgcgaaaa tcatcatgca gcaaatttgg atgagcaaat taaagtggga tgacgttctg      3660
     gacggtaaac tattgcaagc ttggattatg tttcgggaca cgttgagtca tatacacgaa      3720
     atcaaaattc ctcgatattt tggtgcagtg aattccactc gttatgagat tcatggattt      3780
     gcagatgcgt ccagtgtagc atatggagcg tgtctgtaca ttcgagttgt tactcaagat      3840
     ggagtaaaac tgtcgctcat ttgcagtaag tcaagggttg tccccatcaa gggattgaca      3900
     attcctcgat ctgaactttg tgcagccttg ctactcgttc gtttgttttt gaagctcctt      3960
     ccggctgtaa agttggagtt tcagtccatt catttttggt cggacagtca agttgtcctg      4020
     gcatggttaa agaaaccact accgcaactg aatctcttcg ttcgcaatcg agtatcagaa      4080
     atcgttgaag gttcgtctga tgccgattgg aattacgtca aatctgctga aaacccagct      4140
     gatatcgtta gtcgtggtca acctcctcag ttgctggttt caaatgacct ctggtggtat      4200
     ggaccacagt ttttgcgtaa ttctacatat cgaatcgatg agccagagct tatttccgat      4260
     gaccaacttc ctgaatggaa tccagttgcc aacacctatg caatgtctgt gccggaaagt      4320
     ctgccagtta tgaccgcttt cgagtccttt cggaaactgc agcgtgtaat aggatatgtg      4380
     cgaaggtttg taagaaatgc aagatccgtc aaatctcagc ggatcacttc tcgatatctg      4440
     acgatacagg aaatacgtga atcgatgaat gtgatagtga agtatgtcca aaaaagcgag      4500
     ttttctgatg aaatctgtcg tctaatgtcg aatgaaccat tgcgtcgtct tggtagtctg      4560
     ggtgtaatgt taaaggacga tattttgcga gttggtggaa gattacgtaa tgccactctg      4620
     ccgttcggtg caaagcacca gatgttgtta ccggataaaa atccgattgt cgaatcgttg      4680
     atcagaacat tgcatagaga aatgttgcac attggtccgt ctggtctcat cgcgtttata      4740
     cgtcaaaggt tttggttgtt gaacgcccga tctgtagttc gaaagatcat ccgtagttgt      4800
     gtaacatgtt tccgtcatag tccgcaattg ctgcagcctt cgatgggcga tctgccagaa      4860
     gttcgtgttg ttccatctcc gccgttctcc aagtccggcg ttgactttgc aggcccggtc      4920
     ttcattcgtc aagggggtag aaagtccact ctggttaagg cttacatttg cctttttgtt      4980
     tgtatgtcaa caaaggcaat tcacctcgaa ttggtttcgg atttatctgc cgcggctttc      5040
     gtagcagcgc ttcatcgatt tgtcgctagg cgcggtctcg tcgaagagtt gttttcggac      5100
     aatgggtcaa atttcgttgg cgccaagtcc gagttacaca gtttgtacca attgttcaaa      5160
     agtgatcaat tgcaaggaaa gctgaacgaa ttttgccatg cccgtgaaat caaatggagc      5220
     tttatccctc cgcgtgctcc gaacttcgga ggtctgtggg aggcgggtgt gaagagcacc      5280
     aaaacgcatc tcaagaaggt actccgtgac gcttctctga ctttcgaaga atattacacc      5340
     gttctaactc agatcgaagc aatcctcaac tcgaggcctc tgttttcctc ctcatccgac      5400
     cctagcgagc ctgaagcaat cactccgggg cattttctta tcggtcgtga gttaacggct      5460
     atcccagaac cgactttgga agatactaaa atcaacagat tgagtcgttg gcagctcgtt      5520
     cagcaaattc gcgatcattt ttggaaacgt tggtctcggg aatatttgaa cactcttcaa      5580
     acgcggcaaa aatggacgaa aggatgtaaa aacgtttctc cagggatggt tgttttgttg      5640
     aaggaagaca acattccgcc gcaatcgtgg aagttagctc ggattgttaa cgtgtttcca      5700
     gggtctgact ccgttgttag ggttgcagat gtccaaacgg ttaacggtgt tctccgtcgt      5760
     ccaatttcta aactcgcccc tctacccatt gaacaagatc tccaattgaa tgcgtagatt      5820
     cttttcgccc ggggagaa                                                    5838
//
ID   BEL-746_AA-LTR repbase;    DNA;    INV; 625 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-746_AA-I;
KW   BEL-746_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-625
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-625
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 596-596 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 625 BP; 162 A; 147 C; 146 G; 170 T; 0 other;
     tgtccgcgca cagtgcgaac gttgtatagt tatatgttta tgttattcct atttatcctc        60
     acccttaatc caacatccca aaattccacc ctactaaccc cgagtcggcc acgggttttt       120
     tggcccacct ctcactaaca catttgtatc gtaatggtct ggatgcgcac tacccacccg       180
     aatggcaata agtatgtatt ggctggcggc tgatgagcga tgagcggcgg ctaaccacat       240
     cagcagatgc gacgaccaac atcacccgga ctgagcgtgg agggagatga acatgtcgca       300
     acatgtttgt tacgttccac cgaccaatga cgacgaggca tgagctgatt ggtgggtggc       360
     gaatcgagga atagtatata agaaaatgag tttgttcgca gtgtatcagt ttttcattca       420
     accttcgagc aataaacatc ggttaagttg caaagtgaaa agtttctctt ttatcttgga       480
     cagccaaaat aaaaacagcc tttttgaagg cttttgagtt gttttggaat aattcaccga       540
     gtcgagctat cgtcagctgc tgttcccgct ggcactctct tcagaggaag gagttgccca       600
     tccgtcaagt gtccgtgatc ggaca                                             625
//
ID   BEL-747_AA-I repbase;    DNA;    INV; 6288 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-747_;
KW   BEL-747_AA-I; BEL-747_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6288
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6288
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 620-620 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           854..6265
FT                 /product="BEL-747_AA-I_1p"
FT                 /translation="MMKKEVDADKEANVLRRNKEHLWEEIELLMNLAESAE
FT                 EGEQRDLMGVWSERLEEIAKEYRRTVCLLEASYGDQNKDDRMKFDTKYYAL
FT                 RAFYTKRLRVTTIPTSPSVKPASNIRYPEIHLPRFSGKLTDWCVFRDAFES
FT                 AIGNRDEISNVDKFQYLKGLVQGEAARIIDSISISELGYNDAWRALKLRYE
FT                 NKRQQIRCHIKSLFEVPSMKKESSDELFNLVDRFEQHIAVLKRLGEDTDSW
FT                 DSLLIYQLSLRLDPHTLKEWEGYCARLDSDNVANVLSGATSADAEEEELPT
FT                 YVSMVNFLQNYARVLQSIGPVAGSSRDRDPRGKPAKSAVHVSSTSSDSSKK
FT                 CEKCSQPHFLYHCPDFQKLSEQQRFEFVKTKKLCANCLHSTDHFAKSCPSK
FT                 QCNRCPKKHHTLLHGAQFVPAPAPGSNNSGPVSLVAQASDPKPTPPTPSTV
FT                 ANVSAPSMQSQPQRLYPVVGSHPQQCPAVPSVPANRHYAMMACDKEKDQTA
FT                 VILPTALVEIEDAQGRKVTARCLLDSGSQSHFITKALCDKLQLPRTRAAAP
FT                 VLVCGIGQTTTKATHTVTTKVSSRVSPYVVEPRLLVLSSLAIKLPGSAINI
FT                 REWQIPETVRLADPTFHVSNDVDIILGAQFFFETLRYGRIQLGENMPVLQN
FT                 TVLGWVVAGPCTIRDHDHADPRSCFMSSTARVEELLRKFWELETVHDTKGW
FT                 SATDKICEEHFLANTTRTSEGRYIVKLPKREELVQQLDDNLYQATRRFYSL
FT                 ERSLMSDPEKRNMYQDFIDQYIAMGHMREITEEEVNIRPQFVLPHHGVLKL
FT                 ESATTKLRTVFDASCKSRSGLALNDVLIPGPAIQDMLVEIVLRFRLHRFVV
FT                 SADIEKMFRQVLVHPTDQPLQRILWRDNPELPIKVYQLITVTYGLNNSPYL
FT                 ATRVLQQLATDEEHRFPYAASVARRDFYVDNLLTGSNNVEELKVIVQQMID
FT                 LLAAGGFPLRQWSSNSEEVLNVVPVHLQETRPLLELDRDTSVTALGLRWEP
FT                 ASDQLSFKPPKWKDHQSITKRIVLSQMSSLFDPLGLLGPTVVRAKIIVQAL
FT                 WKCQLQWDTPLPEQFEKEWISYQQDIHHLGGLKIPRLVMTVPYQRLEIHGF
FT                 SDASLQAYGACIYVRTIDAEGRCNVQLLTAKSRVAPLSSKSIPRLELSAAL
FT                 LLAHLLAHVLKTTSLDAPVYLWTDSTITLDWISAPPSTWKTFVSNRVAEIQ
FT                 ELTISSSWNHVPSEENPADLLSRGSSLEHLIGNALWWNGPVWIRSLNEPWP
FT                 RKYVSRKQDPEDPELRKVVALPIFTEPEDIIDRYSSLTPLVRTCAWWRRFS
FT                 ENSRREKDNRLTGPLSPSELDRALLGLISRVQEDAFGPEMKQLARNETVSK
FT                 QSKLRFLHPHLVDGLIRVGGRLHHAALTVDERHPVVLPADHRLTRMIVTLE
FT                 HLNTLHGGPNLLLSSLRRRFWPLNGRNLASTTVHRCVTCSRAAPKTLEQLM
FT                 GSLPPVRVTKAFPFENVGVDFAGPVFLRAPSKRASPIKAYVAVYVCLAVKA
FT                 VHLDLVPDLSSEAFIASLHRFTGRRGKPRNIYCDNGRNFVGAQRELKELRQ
FT                 LFVSQQHQDAVIHDCSTNNIEFHFIPPRSPTLGGIWEAAVKSMKLHLRRIL
FT                 GNAMLPETEFRTVLIQVEATLNSRPITAMSEDPQDLQPLTPGHFLVGRPLN
FT                 ALPEPSLDDVPENRLSRWQRVQRLSQQFWRRWHKDYLSALHNRYRWSNVTA
FT                 NLVRGAIVLLRDENLPPLKWSIGRVVDVHPGTDGLVRVASVRTSTGVTKRA
FT                 VNKLCLLPVEFNPEDIQIQQKPPSSDGTSDGEE"
XX
SQ   Sequence 6288 BP; 1561 A; 1590 C; 1563 G; 1574 T; 0 other;
     tggtccttct gatccggatc agaatccgta ctttgaccaa ctcgcgttgt gttacaatca        60
     attcgccatt aattggcacg cacccatcaa gcggtgcagt gaattgcgca gcatagctgc       120
     tgaatggtgt gaaagtgcga aaattgccgt atttcgacaa cggaagttgc gtctcgagcc       180
     aactgcgcag tgaaattgtt gaaattgtgc gccgaaagaa aaaacgtgtt tgtgacgcca       240
     ttttgtgaag cctgaacaaa gcccagtgaa gaggcacatg actgagtgct ttcggtgtat       300
     gagtgtgatc tgcgcagtat atctggattt gtacgccttc gttgtgttgg gtgttccaca       360
     ccattcgtga gaagtaacgt cgcatcaagt gcgactagtg agaagtgtat accacatcgg       420
     catttgtgag agtgttgaga gttgccgccg gtgtgtgccg gctctctagc ttggagcgtg       480
     aagagccgtt cggcatttgt gagagttgcc gtcttcagcc gccggggaga gctaccggct       540
     acccaagaga gaggattacg cttgacggcg ttcgactgcg acgctggtcc cgaggattga       600
     atgaatgccc cagctaccag tgtgatcgtc gtaagcaacc gagcattgag tgagtaccga       660
     ttcctttttc tcttgcacac gacccgcgtc gtgatcgttg atattgttca ccatttcgtg       720
     ttttcatcgt cgtcgtcggt gagaagcaca agtttgtcgt ctcgttctcg cgttcggtcg       780
     tttcaaccgc gtgttgacac gggaaagaga ctcttcgttt acgcataccg tgtagagcca       840
     cgtaaaaagc aaaatgatga agaaagaggt tgacgccgat aaggaggcaa atgttttgcg       900
     taggaacaag gagcatttgt gggaggaaat tgagcttttg atgaacctgg ctgaatccgc       960
     tgaggaaggg gaacaacggg atttaatggg agtatggtca gaaaggcttg aggaaattgc      1020
     aaaggagtat cgtcgtacgg tttgtctctt ggaagcttcg tacggtgatc agaacaagga      1080
     tgatcggatg aaatttgaca cgaaatacta cgcgctccgt gcattttaca ccaaacgact      1140
     gagggtaact acgattccaa cgtcaccgtc tgttaaacca gctagcaaca ttcggtatcc      1200
     tgaaattcat cttcctcggt ttagtggaaa gctaacggat tggtgtgtgt ttcgcgatgc      1260
     attcgagtct gctataggaa atcgggacga aatcagtaac gtcgataagt tccaatattt      1320
     gaaggggctt gtccaggggg aagcagcgag aataatagac tcgatttcga ttagtgagct      1380
     cggatacaac gatgcttgga gagcactgaa actgcgatat gagaataaac gccagcagat      1440
     tcggtgtcac attaaatcat tgttcgaagt tccaagcatg aagaaggaat cttccgatga      1500
     gctctttaac ttggttgatc ggttcgaaca gcatattgct gtgctgaagc gtttgggtga      1560
     ggatactgac tcttgggact ctctgctcat ctaccagttg tctctccggt tggatccaca      1620
     cacactgaag gagtgggaag gttattgtgc tcggctggat agcgataacg ttgccaatgt      1680
     cctgagtggt gccacaagtg cagatgcaga agaagaagaa ttgccaacgt acgtttccat      1740
     ggtaaatttt ctacaaaact acgccagggt tttgcagtcc atcggtccag tcgccggttc      1800
     ttcccgtgat cgtgatccaa ggggtaagcc cgcgaagtcg gcagtacacg tcagctccac      1860
     ctcttcagat tcgtccaaga agtgtgaaaa gtgcagccag ccacatttct tataccattg      1920
     tcctgatttc caaaaactat ccgagcaaca acgattcgag tttgtaaaaa cgaagaagtt      1980
     gtgtgccaat tgtctccaca gcactgatca ctttgccaag tcctgtccaa gtaagcagtg      2040
     taaccgttgt ccaaaaaagc atcatactct gctccatggt gcacagtttg taccggcacc      2100
     tgctcctggt tccaacaaca gcggtcctgt gtctctcgtc gcccaagctt ctgacccaaa      2160
     acctactccg ccgactccgt ccactgttgc aaatgtttct gccccgtcga tgcagagcca      2220
     acctcaaagg ttgtacccgg ttgtcggttc ccatccacaa caatgcccag cagtgccatc      2280
     agttcccgca aatcgccatt acgccatgat ggcctgtgac aaggagaaag atcaaaccgc      2340
     agtcattctc cctaccgcac tggtggaaat tgaggatgcc caaggccgta aggttacggc      2400
     acgctgttta ctcgattccg gctcccaaag tcattttatc acgaaggcac tttgcgacaa      2460
     gctacaactc ccacgtactc gtgcagctgc tcctgttctt gtgtgtggta ttggtcaaac      2520
     aacgacaaaa gccacgcata ccgttaccac caaggtatcg tcaagagttt ccccatacgt      2580
     agtagagcct cgtctacttg ttctgtcttc actcgccatc aagctaccag gatctgccat      2640
     caatattcgt gaatggcaaa ttcctgaaac tgtgcgcctg gctgatccta ctttccatgt      2700
     ttcgaacgat gttgatatca ttttgggtgc ccagttcttc tttgaaacgc ttcgttacgg      2760
     cagaatccag ctaggtgaga atatgccagt cctgcagaat acggttctcg gatgggttgt      2820
     tgctggaccc tgcaccattc gggaccacga ccatgcagat cctcgttcct gcttcatgag      2880
     cagtacagcg cgtgtagagg aactgctccg gaagttttgg gagctagaaa ccgtccatga      2940
     taccaagggt tggtcagcca cggataaaat ttgtgaggaa cacttcctgg ccaacaccac      3000
     gcgtacatcg gaagggcgat atattgtgaa gctgccgaaa cgagaggaac tcgtccaaca      3060
     gttggatgac aacttgtatc aagccacgag acgcttttat tcgttggaac gttccctgat      3120
     gtctgatcct gagaaaagga atatgtacca ggatttcatc gaccagtaca tagctatggg      3180
     tcacatgcgt gaaataaccg aggaggaggt aaacattagg ccccagtttg ttcttcctca      3240
     tcatggtgtg ctcaaactcg agagtgctac caccaaactc agaacagttt ttgacgcatc      3300
     ttgtaaatct cgttctggtc ttgccctgaa tgatgttttg attcctggac ccgcaatcca      3360
     agacatgctt gtggagatag tgttgagatt ccgtcttcat cgtttcgtcg ttagtgccga      3420
     cattgagaag atgtttagac aagtgctcgt ccatcccacg gatcaaccat tgcaacgaat      3480
     cctgtggcgt gacaatcccg aacttccaat caaggtgtat cagttgatca ctgtcacata      3540
     tggtctgaac aattcacctt atctagccac ccgtgtactg caacagttag ctaccgatga      3600
     agaacaccga ttcccgtacg cggcgagtgt tgctcgaagg gacttctatg tcgataattt      3660
     gctcacggga tcgaataacg ttgaagaact gaaggtgatc gtgcagcaga tgattgacct      3720
     acttgcagct ggaggcttcc ctctcagaca atggtcttcg aacagtgaag aagtgttgaa      3780
     tgttgttcct gttcacctcc aggaaactcg tccattgctg gaactagatc gtgatacgtc      3840
     ggtcaccgca cttggactac ggtgggaacc cgcaagcgac cagctctctt tcaagcctcc      3900
     gaagtggaag gatcaccagt cgataaccaa gaggatcgtc ctttcgcaga tgagtagcct      3960
     cttcgaccct ctcgggttac tcggcccaac agttgtccgt gcgaagatta tcgtccaagc      4020
     gctctggaag tgtcaactgc aatgggacac accgcttcca gaacagtttg aaaaggaatg      4080
     gatatcatat caacaagata ttcatcactt agggggtctc aaaataccac gtctggttat      4140
     gaccgtgccc tatcaaaggc tcgagatcca tggtttcagc gacgcgtccc tgcaggcata      4200
     cggtgcctgt atatacgtaa gaactatcga cgcggaaggc cgatgcaacg tccaattgct      4260
     tacggccaag tcccgtgtcg ctcccttgag cagtaagtca atcccgagat tggaactctc      4320
     cgccgcgttg cttctagcgc acctcttggc tcatgtattg aaaactactt ctcttgatgc      4380
     tcccgtttat ctgtggacag attcaacaat cacacttgat tggatctcag ctccaccatc      4440
     aacctggaaa acgtttgtca gtaacagagt agccgaaatc caggagctaa ccatctcgtc      4500
     ctcttggaac cacgttccgt ctgaagaaaa ccctgctgat cttctatcgc gaggatcaag      4560
     tcttgagcac ctaatcggca acgctttatg gtggaatggc ccagtttgga tccgctcgct      4620
     gaatgaaccg tggccaagaa agtacgtatc cagaaaacag gatcctgaag atccagaact      4680
     gcgaaaagtt gtcgccctgc caatctttac agaaccagaa gacattattg atcggtactc      4740
     aagcctcacg ccgctcgttc gaacttgtgc atggtggcgt cgttttagtg agaactcccg      4800
     tcgcgaaaaa gacaatcgtt tgaccggtcc gttgtcgccg tcggaactcg atcgtgcgtt      4860
     actcggtctc attagtcgtg tgcaagaaga cgcgttcggt ccggaaatga agcaactcgc      4920
     tcgaaacgaa acagttagca agcaatcgaa gctgcgattc ctgcatccac atctcgtcga      4980
     cggtttgata cgagttggcg gccggctgca ccacgcggcc ctgaccgttg atgaacggca      5040
     tcctgtggta cttcctgcag accatcggct aacccgaatg attgtcaccc tcgaacatct      5100
     gaacacgctc cacggtggtc ccaacctcct gttgtcttcc ctgcgtcgtc gtttctggcc      5160
     gttgaatggt cggaatcttg ctagtaccac tgttcatcgt tgtgtaacct gcagtcgtgc      5220
     tgctccgaag accttggaac aactgatggg tagtcttccg ccggtgcgag taacaaaggc      5280
     tttcccgttc gaaaacgttg gcgttgactt cgccggccct gtatttcttc gagctcccag      5340
     caagcgtgcg tctcccatca aggcgtacgt tgcggtatac gtgtgccttg ctgttaaggc      5400
     ggtacactta gatcttgtgc ctgacttgtc atctgaagca ttcatcgcta gcttgcatcg      5460
     ctttactgga agacgcggca aacccagaaa catttactgt gataacggtc gcaatttcgt      5520
     gggagcccag cgagagctga aggagctccg tcaactgttt gtttcccagc aacatcaaga      5580
     cgccgttatt cacgactgct caaccaacaa catcgagttc catttcattc ctcccagatc      5640
     accaaccctc ggcggaatct gggaggcagc ggtgaaatcg atgaagctcc accttcgccg      5700
     catcctggga aatgcaatgc tgccggaaac agagttcaga acagtcctca tccaagttga      5760
     agctacatta aactcacgac cgataaccgc tatgtccgaa gacccacaag acttgcaacc      5820
     gttaactcca ggacatttct tggtgggaag acctctcaat gcgcttcctg agccaagtct      5880
     ggatgacgtt cctgaaaacc gtctctcgcg atggcagcgt gtccagcgtc tgtctcaaca      5940
     gttttggcga cgttggcaca aagattacct cagcgcgctg cataatcgct accgttggtc      6000
     gaatgtaaca gctaacctcg tccgtggcgc catcgtattg ctacgtgatg aaaatctgcc      6060
     acccctgaag tggtcaattg gaagagtagt cgacgtccac cccggaactg atgggcttgt      6120
     ccgggtagct tcggtaagaa ccagtactgg agtcacgaag agggcagtaa acaagctctg      6180
     cctgctacca gtggagttca atccggagga catccagatc cagcagaagc cgccatcatc      6240
     cgatggcacc agcgatggtg aagaatagta tattcttggc ggccggaa                   6288
//
ID   BEL-747_AA-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-747_AA-I;
KW   BEL-747_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-331
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-331
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 573-573 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 331 BP; 82 A; 72 C; 71 G; 106 T; 0 other;
     tgtacaacgt gcaaccggca ttgaatttgc attttgtgat tttaattttt accatgtttg        60
     cattcctttt gatccactgt gcggtcattg aattcaacac taatacacac gcacagtccc       120
     tatgtaacca ccaagtacag aaataaaagt tagttctttg taagaagtca atcactccgg       180
     gcgtttttat gacttttccc cgtccgagtt ctcgagtgtt ccgccgcgag ttgaaccgag       240
     ttgtgaattg tagtgtccgc tgaaatatcg aaggccggtt cgcgaatccg cagtttgtga       300
     ttcggggtcg ggaaaattgc tacattttac a                                      331
//
ID   BEL-748_AA-I repbase;    DNA;    INV; 5593 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-748_;
KW   BEL-748_AA-I; BEL-748_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5593
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5593
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           260..5590
FT                 /product="BEL-748_AA-I_1p"
FT                 /translation="MSPVDRTPSKSKMDEVKPLIHQRGQVKAKVTAISNAL
FT                 EKAEDDNQVSLPLLKVYTKKLDAHYLEYNALHKEILNLIPESRIDEQDAKL
FT                 NEFDNLHTECMMRLECLMEKCSKPVVSPGSQPSSSNQNQIIVQQQPLKAPI
FT                 PTFDGRYESWPRFKSMFLDIVGRCSDSDAIKLHHLEKSLVGDAANIIDSRT
FT                 LADNNYAHAWEILEERYENPRVIVDIHIGGLLLMKRMGKESHKELRELVDT
FT                 CTRHIEGLKFMEQTTDNTAGLIINKVLISCLDPNTRKLWERTLAHGELPNL
FT                 DDTLKFLKEQCQVLERCEADLSIPSKQIPAKSPQVSNKPPGAKVHTAASDS
FT                 KFVSCQFCSKTHFNYQCPEFRKLSIPDRVTKVKEANLCFNCLRHGHRSVNC
FT                 SSKRVCAKCSKHHHSLLHDETPKSESNVVTKTEPSHDRAMVAQNAVPISTQ
FT                 TPSDCVQSTTVSSSYSLTNPAVLPNVLLLTAKVNLIDCNGQFVPCRAFLDC
FT                 GAQVNLLSASMFEKLGIEGKSVSVNIFGVSDTQSTSSRFVTVNMHSMYSDY
FT                 HLTLNCLVTPKITGILPSKSFDVSDLNIPCGIQLADPEFYRPSEVDLLIGN
FT                 QHFFSLLKTGSVTIADGMPEFRETHLGWVASGEVTAKSDAVIDCQHVHSVS
FT                 LASLDKSIRQFWEVEEVEVKGARSEQEEQCEDSFRKHHRRDKTGRYIVKLP
FT                 LKDNFTQLSSNRSLALRRFHFLEKRLNKDADLRLQYSNFIREYESLGHCRE
FT                 VFEIDDHPDMLKYYMPHHAVLRPHSTSTKLRVVFDASAKDSSGLSLNDVLQ
FT                 VGPTVQSDLISILLRFRKHRFVLTADIQKMYRQVRVDPNQTSLQRIFWRES
FT                 PAEKLRVLELSTVTYGTAAAPFLATRSLVQLCDDEGDKYPLGKHVVHDDCY
FT                 VDDVLSGADSVEEAKEIRKQTQDMLALGGFPVHKWCTNYEPILQDVPPSER
FT                 ETLLHLDQLSANEVIKTLGLIWDPRKDEFLFTVNAVSDQVLPITKRSMFSN
FT                 IAKLFDPLGLLSPVVVLAKKLIQDAWIAGIKWDDPLDGILLESWLRFSNSL
FT                 VDVKEIRIPRSISLPEHVVLELHGFSDASKMAFGACLYVRSIQSNGSVAVK
FT                 LLCSKSKIAPAKEMTIPRKELCAAVLLSRLVLKVLASLQVSFITVQLWTDS
FT                 QIVLHWLKKSSSELLPFVRNRVAEIVQENSHTNWNYVPSKENPADIISRGQ
FT                 LPSVLNTNDMWWNGPPFLRSAHIDVQSVDDILDSDLPDVKAANVTVTPVLN
FT                 IDKLPLFTRFSSFRKLQRVLAYVKRFIHNCRQKLPENSILHNSPTVSELRA
FT                 SLHTIVKVIQHEALPGELKRIENGEPCKRIAALGPFLQDGALRVGGRIQKS
FT                 KLPYESKHQYILPHHPLTDLIIKTYHEEHLHIGPSGLLSSLRQRFWLLGSR
FT                 SAVRKITRSCVQCFRVNPKAVSQYMGNLPAIRVTPAVPFEVTGIDYAGPFL
FT                 VRQGNRKPIIVKAYIAVFVCLVTKSIHLELVSDMTTSAFLAALQRFIGRRG
FT                 LVRELHSDNGSNFRGAKTELHNLFVMFRDESATKNIEAFCLDKEIDWRFIP
FT                 PESPEFGGLWEAAVKSTKFHLKRILKTTPLTFEEFSTLLVQVEAILNSRPL
FT                 FSTSDDPNDEEVITPGHFIIGRPMNAIPEPSYDGIKQNRLSRWQLLQSMRE
FT                 HFWKSWQRDYLTSLQPRSKNRTVLSNVTPGNIVLLTDKSLPPQVWKLGKIV
FT                 QVYPGEDGLVRVVDVKVGDSVYRRSVVKISLLPIEDNRSKPSPNSSQADLL
FT                 GSSVGG"
XX
SQ   Sequence 5593 BP; 1546 A; 1255 C; 1239 G; 1553 T; 0 other;
     ttttggtcct tcgaaccgga tgtgaagaag aaaaactgaa ctgtgaagtg atttgatgtg        60
     attgtgcgag ttgaacattg actttgaaga aggaaacaac tcaagtgcta tcgaagaaga       120
     ctatgagtgt gaaagcaaag gaatgaactg aacgtgctcc gaaagaagat aagtaaagtg       180
     ctcatcttgg tttgttctgt atcagccggt attttccgat tcgtgttact ctccctgcag       240
     taacattact ctcgttgtga tgtcgccggt tgatcgaaca ccaagtaaat cgaagatgga       300
     tgaagtgaag ccgcttattc accagcgtgg ccaggtgaag gccaaagtta cagcaatctc       360
     caacgccctt gagaaagccg aagatgataa tcaggtgagt ctcccactac tcaaagttta       420
     caccaaaaaa ctagacgctc actatcttga gtacaacgcg ctgcacaagg aaattttgaa       480
     tttgattccc gaaagtagaa ttgacgaaca agatgctaag ttgaatgagt ttgacaatct       540
     tcatacggag tgtatgatgc gtctcgaatg tttgatggag aagtgttcta agccggttgt       600
     ctctcctggc agccagcctt catcgtccaa tcaaaaccaa ataattgtgc agcagcagcc       660
     tctaaaagct cccataccga catttgacgg tcggtatgaa agttggcccc gcttcaaatc       720
     gatgtttttg gacatcgttg ggcgttgttc ggattcagat gcaatcaaat tgcatcattt       780
     ggaaaaatct cttgttggcg atgcagccaa tatcattgac tcaagaacat tagccgacaa       840
     caattatgcc catgcgtggg aaatactcga agagcgatat gaaaacccca gggtcattgt       900
     ggacattcat attggggggt tactcttaat gaagagaatg ggtaaggaat ctcataaaga       960
     actaagggag ttagttgata catgtactcg gcacattgaa ggtttgaagt ttatggaaca      1020
     aaccaccgac aatactgctg gcctgatcat aaacaaagtt ttaatttctt gtctcgatcc      1080
     aaacactcgt aaattgtggg aacgaactct tgcccatgga gaactaccaa atcttgatga      1140
     cactctaaaa ttcctcaaag aacagtgcca agttcttgaa agatgtgaag ctgatctttc      1200
     gattccctcg aaacaaattc cagctaaatc gccacaagtt tcgaataaac ctcctggtgc      1260
     taaggtgcat actgccgcat cagattccaa gtttgtttct tgtcagttct gttcaaaaac      1320
     gcatttcaat taccagtgtc cggaatttag aaagctgtcc atccctgatc gcgtaaccaa      1380
     ggtaaaggaa gcaaaccttt gcttcaattg tttgcgtcat ggccatcggt cagtcaattg      1440
     ctcgtccaag agagtatgcg cgaaatgtag caaacaccat cactccctcc ttcatgatga      1500
     gactcccaaa tccgagagca atgtggtcac taagaccgag ccttctcatg atcgtgccat      1560
     ggttgcacag aatgcggtgc cgatttcgac acaaactcct agcgattgtg ttcaatccac      1620
     tacagtctcc tcgtcgtact cgctcaccaa tcctgccgtc ttgccaaatg ttttgcttct      1680
     gactgcaaag gtcaatctta tcgactgtaa tggtcagttc gtgccgtgcc gtgcttttct      1740
     cgactgcggt gcgcaagtca accttctgtc cgcatccatg tttgaaaaac ttggtatcga      1800
     aggaaaatcc gtcagtgtga atattttcgg tgtaagcgat acacagagta catccagtcg      1860
     attcgtaaca gtgaacatgc attcgatgta cagtgattac catttaactc tcaattgcct      1920
     ggttaccccg aagattaccg gtattctacc aagcaaatcg tttgacgtgt ctgatctcaa      1980
     tattccttgt ggtatacagt tggctgatcc tgagttttac cgtccttccg aagttgatct      2040
     ccttatcgga aaccaacact tctttagttt gttgaaaaca ggcagcgtga caattgccga      2100
     cggaatgccg gagttccgcg aaactcatct tggatgggtc gcttctggtg aagttacggc      2160
     aaaatccgat gcggtaattg attgtcagca tgtccattcg gtttcgctgg catcactcga      2220
     taaaagcatc aggcaatttt gggaagttga ggaagttgaa gtaaagggcg ctcgctctga      2280
     gcaagaggag caatgtgaag attcgtttcg caaacatcat cgccgtgata aaaccggaag      2340
     atacattgtc aaactaccat tgaaagacaa tttcactcaa ttgtcgagta acagatcatt      2400
     ggctctccgt cgatttcatt ttttggaaaa acgcttgaat aaggatgccg atctccggct      2460
     tcagtattca aatttcattc gtgagtatga gtcgttggga cactgcagag aggtctttga      2520
     gattgatgac catccggata tgttgaagta ttatatgccc caccacgctg tgcttagacc      2580
     gcatagcacg agcacaaagc ttagagtagt ctttgacgca tcggctaagg attcatcagg      2640
     tctatcactc aatgacgtac tgcaagtggg tcccactgtt caaagtgatt tgataagcat      2700
     tttgctgagg tttcgaaaac accgttttgt tctcaccgca gatatacaaa aaatgtatcg      2760
     acaggttaga gtggatccga accaaacttc ccttcagcga atattttggc gtgaaagccc      2820
     agcagaaaaa ttacgtgttc tagaattgtc aactgtgacc tatggtacgg ctgcagctcc      2880
     ttttctagcg accagatcct tagttcagct ctgtgatgat gaaggtgaca agtaccctct      2940
     aggaaaacac gttgtacatg acgattgcta tgtagacgat gtgctgtctg gagctgactc      3000
     cgtcgaagag gccaaagaaa tccgaaaaca aacccaagat atgctagcat tgggtggttt      3060
     tcccgttcac aaatggtgta caaattacga gccaattctt caagatgttc caccttcaga      3120
     aagagaaaca ttactccacc ttgatcaact gtcggccaat gaggtaatta aaactcttgg      3180
     tcttatctgg gatcctcgaa aggatgagtt tcttttcact gtgaatgctg tatcagatca      3240
     agtcctccca atcactaaaa gaagcatgtt ctcgaatatc gcgaaactct ttgatccact      3300
     tggacttctg tctcccgttg tagttttggc taaaaagttg attcaagatg cgtggattgc      3360
     tggtatcaaa tgggatgatc cattggatgg catccttctg gagtcttggt taaggttcag      3420
     taattctctc gtcgatgtga aagaaattcg aattcctcgt tcaatttctc ttcctgagca      3480
     tgttgtccta gaactacatg ggttttcgga tgcttcaaaa atggcatttg gagcatgtct      3540
     ctacgttcga agcattcaat caaacggttc agtggcagtt aaacttctgt gcagcaaatc      3600
     gaaaatagct ccagcgaagg agatgacaat accgcggaag gagctttgcg ccgccgtgct      3660
     tctttctaga ctggttctca aagtattagc ctcgctgcaa gttagtttca taactgttca      3720
     gctctggact gatagtcaaa ttgtgcttca ctggttgaag aaatcctctt cggaattact      3780
     tcctttcgtc cgtaatagag tcgctgagat cgtgcaggaa aattcccaca cgaattggaa      3840
     ctacgtgccc tccaaggaaa acccggccga cattatttca cgtggccaat tgcctagcgt      3900
     tctaaatacc aacgatatgt ggtggaacgg ccctccattc ttgcgctcag cacatatcga      3960
     tgttcaatct gttgacgaca tactcgattc cgatttacca gatgtaaagg ctgcgaacgt      4020
     aacagtaacg cccgtcctca acatcgacaa gttgccgttg tttaccagat tcagttcatt      4080
     tagaaagcta cagcgtgttc tcgcttatgt taaacgcttc attcataact gccgccaaaa      4140
     actccctgag aatagcattt tgcacaattc gcctacagtt tcggaactcc gtgcctcttt      4200
     gcatacaatc gttaaggtga ttcaacatga agctcttccc ggtgagttga agcgaattga      4260
     aaacggtgaa ccttgcaagc gtattgcagc attaggtccg tttcttcaag acggagcgtt      4320
     aagagtcggt ggacggattc aaaaatccaa gctgccttat gagtcgaaac accaatacat      4380
     acttccgcac catcccttaa cagacctcat tattaaaacc taccatgagg aacatttgca      4440
     tattggaccg tcaggcttat tatcctcttt aagacaacgt ttctggttgc tgggatcacg      4500
     ctccgccgtg cgaaaaataa caaggtcgtg tgttcagtgc tttcgcgtta atccaaaggc      4560
     agtgtctcag tacatgggca atttgccagc tattcgagtg acgcctgctg ttccttttga      4620
     ggtcacaggc atagattatg caggaccctt tctggtccga cagggaaacc gtaagcccat      4680
     catcgtcaaa gcgtatatcg ctgtttttgt gtgtctcgtg acaaagtcaa tccaccttga      4740
     actagtctcg gacatgacaa cctcagcctt cttagcagca cttcaaaggt ttataggtcg      4800
     ccgtggtttg gttcgggaac tccattcaga caatggcagt aatttccgtg gcgctaaaac      4860
     tgagttgcac aatttgttcg tcatgttccg agatgaaagt gctacaaaaa atatcgaagc      4920
     attctgtttg gataaagaaa tcgattggcg atttattcct ccagagtccc ctgagtttgg      4980
     cggactttgg gaggccgccg taaagtccac aaaattccac ttgaagcgca tcctaaagac      5040
     cactcccttg acttttgaag aattctctac attactggtt caagtcgagg ctatcttaaa      5100
     ctcgcgtcct ctgttttcga cctctgatga ccccaatgat gaagaagtta tcactccagg      5160
     ccattttatc attggtaggc ccatgaacgc gattccagaa ccatcgtatg atggtataaa      5220
     acaaaatcgt ttatccagat ggcagctcct acaatcaatg cgtgaacatt tttggaagtc      5280
     gtggcagcgt gattatttga ccagtttgca accaagatcc aagaaccgta cagttctttc      5340
     taatgtcaca cccggtaata tagttcttct aacggacaag agtttgccac cacaggtttg      5400
     gaaattggga aagattgtcc aagtgtaccc tggggaagat ggtctagtaa gggttgtaga      5460
     cgtaaaggtg ggagactctg tgtatcgacg atccgtcgtg aaaatttcac tgctaccaat      5520
     tgaggacaac cgttctaaac cgtcaccgaa ttcaagccaa gccgatctac tggggagttc      5580
     cgtggggggt gta                                                         5593
//
ID   BEL-748_AA-LTR repbase;    DNA;    INV; 701 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-748_AA-I;
KW   BEL-748_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-701
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-701
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 597-597 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 701 BP; 156 A; 160 C; 164 G; 215 T; 6 other;
     tgttcgctgt agcgaacgtg cgtmtggcat cactgctaca gaaacaacga ccgaccaaca        60
     tcgaacgcgw gccaatcacg ttacagcatg tatcagccaa tcagaactca gcttatatcg       120
     gtgctgtaaa ctaagcgtca ttatttgttg cgaccattcg ctgccgaccg gcaaccaatc       180
     agaatgtatt kagttttttt ktstcttttt tttttatttt gtaccttgta taaaagaaac       240
     accatccgta gtcagtttgt cagtttgtat caagtgttcg aagtgaatac atcgakgaag       300
     aggagaaagt aaaaaaaaag tgttttattt ctcggaagtg atccgaaagt ggttcctgaa       360
     agttgtgtct gctgatgcca tcggagtcct gtctgctgtt tttttttgtt gctgctctgt       420
     cccgctcgac gctgctacct gcttgcccag aaagagttgc taataattct cgagttcttg       480
     tcagagcttg agcctttccc aacagcaagc tggtgcaggt tgagtggaca ggcagcattg       540
     ctgctggcgt catattttcg ctgtcgtcga cccatcgttg gatccgccat tttgttgcca       600
     ctgcgagtgg cttcctactg aagtgtattg ccgtcggcgt cctgtgtggc cgataatctc       660
     cttccaaccc tttgcggttg agatggtggc tagtgccatc a                           701
//
ID   BEL-749_AA-I repbase;    DNA;    INV; 6509 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-749_;
KW   BEL-749_AA-I; BEL-749_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6509
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6509
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 621-621 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           477..5978
FT                 /product="BEL-749_AA-I_1p"
FT                 /translation="MAEELQKKKTNIIDSLVLLERYVKDYETDPKQIGLVE
FT                 AWAKRLEKLYDQYHEIAVQLELLSTEDHPIDLKQERMKIDGKYYALSAFYL
FT                 SKLSKPSTSSASIQPPSGQPMRVKLPELNLPKFSGKLEDWCVFRDSFESAI
FT                 GCRTDISAVEKMQYLKGLVQGEAARVLDPIKISEQGYKDAWRTLRLRFENK
FT                 RQLIKCHIKTLFDTPTMKRESAEELLALVDRFEQQLSVLKSLGEPADKWSS
FT                 LLVYQMSIRLDQHTHREWESYCTKLDSENIASVLGGITTKPNDSTVDESAT
FT                 MPSYVTMVNFLQNYARVLIAVAPNTPPLPPPPRFKPKSTKPAAFAAAVSTA
FT                 SSSSSSVPSSTVGKPMMPCERCGQDHYLYHCPDFRNLNLNQRTELVRQKHL
FT                 CMNCLRSSSHFARNCAAQRCRVCSKKHHTLLHTNTEVQSSSGGQSTGSAQQ
FT                 GSQIPPQPSSQAQSASQARSASLPSIQQQLPSTSTANQANVQSASGTPQYA
FT                 LVTHAKEACPETVFLPTALVNIRDXRGRIKVARCLLDCASQRNFISGALCE
FT                 RLQLPRTRLSQEIAISGIGTTSASVEFQTTVTLMSRVAPFSLSSSMLVLPS
FT                 ITVKLPQATIDTRDWSIPSHIDLADPSFAVSGNVDIILGAAHFFQILRYGR
FT                 IKLGDRLPLLQNTEFGWVISGECLLDGHDHANPRYCQFSNPCVIEELVNRF
FT                 WQLEEVQDNRGWSPSERFCEEHFTENTTRNAEGRYVVKLPKREELLSQLRN
FT                 NRYNATRRFYSLERSLQTDSEKRRMYHKFIEEYEQLHHMREVGPEEADVQP
FT                 QYFLPHHAVMKLDSSTTKLRTVFDASCRSKSGLSLNDVLLPGPTIQDSLVK
FT                 IIMRFRFHQFVVSADIEKMFRQILVHPSDQPLQRIVWRDDPDSPLKTFQLC
FT                 TVTYGTNSAPFLSTRVLQKLADDEERQYPLAAPALRNDFYVDNLLSGSDDE
FT                 NSLAVTCEQLIAMLASAGITLRQWSSNSQTLLDTIPPELRETSALRDLDHE
FT                 ASVTTLGLRWEPSTDFLLFKPPHWTEFPVLSKRALASHISSLFDPLGFACP
FT                 TIAKAKMKLQTLWRLQLDWDSPVPDGFAQDWEEFKQKLSGFDQLRIPRHVF
FT                 RPGYLRLELHGFSDASQLGYGACVYIRSIHDQNQYTVRLLVAKSKVAPINI
FT                 KTIPRLELCAAVLLSKLLGQVLENFNYDAAINLWTDSTIVLNWISGLPLTW
FT                 APFVANRVAEIQELTSQATWNHVPSQDNPADLISRGMDLDELMDSALWWHG
FT                 PRWLCSDQHPWPEKYVPRANIDNERRRVVALPVIEEVQEDLIFRYSSLRHL
FT                 LRIGALLRRFCENCVRRKHKQPLELGPLSPPEIDRTLLDLVRRVQQQHFQE
FT                 EYRLLCSNRPVHQRSKLRFLHPQVVDGIIRVGGRLHNARIPIDEKHPIVLP
FT                 NKHRLTEMIARREHIKTLHAGPGLLLSTLRQRYWPLGGRNLVRTIVNRCMT
FT                 CARAKPKSLEQLMGNLPQVRVNQAHPFENVGVDLAGPIYVRTTLRNTRSPS
FT                 IKAYIVVYVCLATKAVHLDLVTDLTSEAFIASLRRFSGRRGIPAHIYCDNG
FT                 TNFVGAHRELKELRKLFNSQHHQEAVAKACADDGSHFHFIPPRSPTFGGIW
FT                 EACVKSVKQLLRRILGNAHLXEIQLQTALIQIEAQLNSRPITPLPASPSDE
FT                 MALTPGHFLIGRPLNAIPDPDLQNIPENRLSRWQRVQQLTQHFWNRWHKEY
FT                 LATLQNRYRWNTELDNLAVGSIVALVDERYPPQKWLLGRILSVHPGSDGLV
FT                 RVATVKTSSGTTQRAVGKLCLLPVEIDLANVTSCPTSSTNQISPVERTPGP
FT                 SSGESSVFLEHL"
XX
SQ   Sequence 6509 BP; 1644 A; 1808 C; 1545 G; 1505 T; 7 other;
     aatttatggt ccttcgagcc ggatggatag tgaaagtgtt aaaacagcag caaatgaagc        60
     gattttaata aaaggctgca agtgtcctgt aatttgcaaa tggccaaaaa gtgcgcgtaa       120
     agtgttgtag cgtccccggc aaagatttgt gccatcttgt actaaagtgt aaacaagtga       180
     ttagatcgca acaaaaacaa acgaaaacag tgaacaatac tcattgaaga ttgcacggtg       240
     tgagcaagtg tgtgtgacgc agcccatcaa tcagctgcgc gatcgtcatc acgatcgctg       300
     tttgttttgc tcgtccactt gtgtgcacaa cataattgcg gtgtgtccga aagaagtttt       360
     ttgcgaaaaa ataaaatcgg acgaaaggtt tgttgcgatt waatttaaaa awtaaaatca       420
     attacgctct gaagttwaag tgatcgtttg accggaagtg acgctacaaa ggaaaaatgg       480
     ccgaagaact gcagaagaag aagacgaaca ttatcgattc gttagtgttg ttggagcgat       540
     acgtcaagga ttatgagacg gatccgaagc aaattgggct agtggaagcg tgggcgaagc       600
     ggttggagaa gctgtacgac cagtaccacg agatcgccgt acagttggag ttgctgtcaa       660
     ccgaggacca tccgatcgat ctcaaacaag agcggatgaa gatcgacggc aaatactacg       720
     cgctttcagc attctatctg agtaagttgt ccaaaccttc tacctcttct gctagcatcc       780
     aacctccatc cggtcagcct atgagggtga agttaccgga gctgaatctg ccgaagttca       840
     gtgggaagct ggaggattgg tgcgtgttcc gtgattcctt cgagtcagcg attggttgtc       900
     gaaccgatat cagcgcagtg gagaagatgc agtacctgaa gggcctcgta cagggagaag       960
     cggctcgggt cctagatccg atcaagatta gcgagcaggg gtacaaagac gcttggcgaa      1020
     ctctccggct gcgtttcgaa aacaagcgac agttaatcaa atgccatatc aaaacgcttt      1080
     ttgatactcc gacgatgaag cgtgaatctg ccgaggagct actggcgctt gtggaccgat      1140
     tcgagcagca gctttccgtt ctcaagagct tgggtgaacc ggcggacaaa tggagctctc      1200
     tgttggtgta ccaaatgtct atccgcttag accaacacac gcatcgggaa tgggagagct      1260
     attgtacgaa gctcgactcc gagaatatcg cctctgttct tggagggatc accacaaaac      1320
     cgaacgattc gaccgttgat gaatccgcca ccatgccttc ctacgtcacg atggtcaact      1380
     tcctgcaaaa ttacgcccga gtattgatcg cagtagcacc aaacacgcca ccacttccgc      1440
     ctccgccccg cttcaagccc aaatcgacca agccggccgc attcgctgcg gcagtatcaa      1500
     cagcatcgtc cagcagttca tccgttccat cttccacmgt cgggaaaccg atgatgccgt      1560
     gtgaaaggtg tggccaagac cactatctct accactgtcc ggacttccgg aatcttaacc      1620
     tgaatcagcg aacagaattg gtaagacaga aacacctgtg tatgaattgc ttgcgatcaa      1680
     gttcccactt tgctcgaaac tgcgccgccc aacgatgtcg agtgtgctct aagaagcacc      1740
     acaccctact ccacacaaat accgaagttc aatcctcttc tggtggtcaa tccactggat      1800
     cagcgcagca aggctctcaa attcctcctc aaccctcttc gcaagctcag tccgcttcgc      1860
     aagctcggtc tgcttcgctt ccctccatcc agcaacagct cccctctacc agtaccgcca      1920
     atcaagctaa tgttcagagc gcttccggaa ctcctcaata tgccctcgtc acacatgcca      1980
     aggaggcgtg tccggaaact gtgttcttgc ctaccgcgct tgtgaacatc cgagatgsta      2040
     ggggccgtat caaggttgcc cgctgtttgc tggattgtgc gtcgcaacgc aacttcatct      2100
     ctggagcgct ttgtgaacga ctgcagctgc cacgtactcg tctgtcgcag gaaattgcta      2160
     tcagtggaat aggaaccacg tccgcttccg ttgaattcca aaccaccgtc actttgatgt      2220
     ctcgagttgc accgttttcg ctgagcagct ccatgttggt actcccgtca ataactgtca      2280
     agctgccaca agccactatt gacacccgtg actggtcaat cccctctcac attgatcttg      2340
     ctgatccaag cttcgctgtg tccggcaacg tcgacatcat tctaggagcc gcacacttct      2400
     ttcaaattct tcggtatggg cgaatcaaac tcggagatcg acttccgttg ctgcaaaaca      2460
     cggagttcgg ctgggtaata tccggagaat gtctgctgga tgggcacgac cacgcaaacc      2520
     ctcgctactg ccaattcagc aatccatgtg tcatcgaaga gttggtcaac cgcttctggc      2580
     agctcgaaga agttcaagac aatcgaggct ggtctccgtc ggaacggttt tgcgaagaac      2640
     acttcaccga aaatactacg aggaacgccg aaggtcgcta cgtagtgaaa cttcccaagc      2700
     gtgaagaact tctctcgcag ttgaggaaca accgttacaa tgcaacccgt cgcttctact      2760
     cccttgaacg gtcactgcag acggactccg aaaagagaag gatgtatcac aagttcatcg      2820
     aagaatacga acagctccac cacatgcggg aggtcggccc tgaagaagcc gatgttcagc      2880
     cgcaatactt cctaccccac catgccgtca tgaagctcga tagttcaacc accaagttac      2940
     gcaccgtttt cgacgcatca tgccgctcga aatctggact gtccctgaac gacgtcttgc      3000
     ttcctgggcc tacaattcag gactccttgg tcaagattat catgcgcttc agattccacc      3060
     agtttgttgt ctctgccgac atcgagaaga tgttccggca aatcctggtc cacccgtcgg      3120
     accagccgtt acagcgaatc gtatggcgcg atgatcccga ttctccgttg aagacgttcc      3180
     agttgtgcac cgtaacgtac ggtaccaaca gtgctccatt cctgtcgacc agggtactcc      3240
     agaagctagc agacgacgaa gaacgacaat atccgctggc agcaccagcc ctccgcaacg      3300
     acttctatgt cgataatctt ctctctggtt cagatgacga aaattctctc gccgtgacct      3360
     gtgaacaact gatcgcaatg ctcgcatcag caggtattac tctccgccaa tggtcgtcaa      3420
     acagccaaac cttactcgac accattccac cggagctccg agagacgagc gcactccgag      3480
     atctggacca cgaagcctcc gttacaacgc ttggtttgcg atgggaaccg tcaaccgatt      3540
     tcttgctatt caagcctcct cattggaccg aatttccggt gctcagcaag cgggcacttg      3600
     cgtcgcacat cagcagtctg ttcgatccac taggctttgc ttgtccaacg attgcaaagg      3660
     caaagatgaa gctccaaacc ctctggaggc tgcagctcga ttgggattca cccgtacctg      3720
     acgggttcgc gcaagactgg gaagaattca agcagaaact ttccggcttc gaccaactcc      3780
     gaattcctcg acatgttttc cgtcccggct accttcggct ggaattacat gggttcagcg      3840
     atgcttcaca gcttgggtac ggagcatgcg tgtatatccg ttcgattcac gaccagaatc      3900
     agtatacagt gcgcctactt gtcgcgaaat ccaaggtcgc gccaatcaac atcaagacca      3960
     ttcctcgcct ggagctgtgt gccgctgtgc ttctgtcaaa actgttaggt caggttctgg      4020
     aaaacttcaa ctacgacgct gcgatcaatc tttggacgga ctcaacgatc gtgttgaatt      4080
     ggatttccgg actaccgctt acgtgggctc ctttcgtcgc caaccgtgtc gccgaaatac      4140
     aagaattgac gagtcaagcg acctggaacc acgtaccatc tcaagacaac ccggcagacc      4200
     ttatctcacg aggaatggat ctcgacgagc tcatggacag tgccctgtgg tggcatggtc      4260
     cgcggtggct atgttccgac cagcatccgt ggccggaaaa atatgttcca agagcaaata      4320
     tcgacaatga aagacggcgt gttgttgcct tgccggtaat cgaagaagtt caggaggatt      4380
     tgatctttcg atattccagt ctgcgtcatc tgcttcgaat tggtgctcta ctccgccggt      4440
     tctgtgagaa ctgcgtgcgt cgmaagcaca aacaaccttt ggagcttgga cccctctctc      4500
     cgccagaaat cgatcgcact cttctcgacc tcgtccgtcg ggttcagcag caacacttcc      4560
     aggaagaata ccgccttctg tgttccaatc gtcctgttca tcaacggtcg aaactgcgtt      4620
     tcctccatcc acaagtcgtg gacggtataa ttcgagttgg cggccggctc cacaatgcga      4680
     gaataccgat cgacgaaaag catcccatcg ttttaccaaa caagcatcgc ttgaccgaga      4740
     tgatcgccag aagagagcac atcaaaacgt tgcacgctgg acctggttta cttctgtcga      4800
     cactacgtca acgatactgg cctcttggcg gccggaacct agtgcgcacc atcgtcaacc      4860
     gttgcatgac gtgcgcaaga gcgaagccga aaagcctgga gcagttgatg ggaaaccttc      4920
     cacaagttcg ggtcaatcag gcgcacccat tcgagaatgt tggagtagat ctcgctgggc      4980
     caatctacgt tcgtaccacg ttgcggaata ctcgcagccc ttccattaaa gcttacattg      5040
     ttgtctacgt ctgtttggca acgaaggcgg tccacctcga tttagtcact gacctaacca      5100
     gcgaagcgtt tatcgccagc ctccgacgtt tcagcggacg gagaggaatt cccgctcaca      5160
     tctattgtga caacggtacg aacttcgtcg gggcccacag agaactaaag gagctccgaa      5220
     aactgttcaa ttcgcaacat catcaagaag cggtagcaaa ggcttgtgcg gacgatggaa      5280
     gccatttcca tttcattccg ccacgctcac cgacattcgg tggtatttgg gaagcttgcg      5340
     taaaatccgt gaagcaactg ttgcgccgca tccttggtaa tgcccaccta amtgagatcc      5400
     agctgcaaac cgcactgatc caaattgaag cccagttaaa ttcgcgtcca atcactccgt      5460
     tgcctgcaag tccttcggat gaaatggccc taacgccagg ccatttcctg attggtcggc      5520
     cgctcaacgc aattcccgat ccagaccttc agaacattcc cgaaaatcga ttgtcccgct      5580
     ggcaacgcgt tcaacagttg acacaacact tttggaaccg ctggcacaag gaatatctgg      5640
     caactctgca gaatcggtac cgttggaaca cggaattgga caacctagca gttggttcaa      5700
     tcgtcgcact cgtggatgag cgatatccac cgcaaaaatg gctcctcggc cgtatcctca      5760
     gcgttcatcc tggttcagat ggcctagttc gtgtagcgac cgtgaagaca agttccggaa      5820
     ctacccaacg tgcagtcgga aagctttgtc tcctaccggt agaaatcgat ctggccaatg      5880
     taacatcgtg tccaacttca tcaaccaacc aaatttcgcc agtcgagagg actcctggcc      5940
     caagctcggg ggaatcgagc gtgttcctgg agcatctgta aagaggaacg aagctctccg      6000
     ttgggtcctc ggacccaacg gatgggactt cgccacaggc aagtaccatt tcgttccctt      6060
     tccatccaga gattcagccg ttcacccttt ccagaaacgt tcagcttcca gttccaacaa      6120
     ccctattcaa caattccaat ttcatcaacc aatcaaattc cgccagttga gaggactcct      6180
     ggcccaagct cgggggaatc gagcgtgttc ctggagcatc tgtaaagagg aacgaagctc      6240
     tccgttgggt cctcggaccc aacggatggg acttcgccac aggcaagtac catttcgttc      6300
     cctttccatc cagaaattca gccgttcacc ctttccagaa acgttcagct tccagttcca      6360
     tcaaccccat gcagaaattc cgtccaacaa ccatgtccac gttgaagttt cggtcactgg      6420
     cactccatac ctgaagacga tgaagatcac cgtgcggagc atcaccgccg ctaatgccct      6480
     gtgaattcaa atttcattgg cggccggga                                        6509
//
ID   BEL-749_AA-LTR repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-749_AA-I;
KW   BEL-749_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-525
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-525
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 574-574 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 525 BP; 183 A; 104 C; 104 G; 134 T; 0 other;
     tgttcaatac ttacctgtta tttgtgaaat tgtcctgaaa tgaaatttgt taatgtaaat        60
     attgtaaata gtacttacct gttaaacacc tgcaaacctg taaaacactc acctcataaa       120
     acacacatca cctgtaaata gaattaaaat atctaccgtt tttaccacac acgcgcccac       180
     tgtgcattct gtggtgccaa ttgaaacagc ataactgtta tacaatcagg ctagagtgtg       240
     agaatgtaca taagaaaggt aaataaaaac agtattaaaa cgaccgtcgc gagtatcagt       300
     cgactacgtc tacccaaatc tcgagtttct ctctccgtcc gaatctaaat cagcttattc       360
     taagttacgc gatagtgccg tgctagtggg ggagaaatat cgattacata aacggtgcgg       420
     gcgataaaga acagccaaac tctctgaagg caagtgatgt gaagtgggga agtgatccaa       480
     aaagggaaga aaagtagccg taaacaaacg gcgagtgctt gaaca                       525
//
ID   BEL-74_AA-I repbase;    DNA;    INV; 6876 BP.
XX
AC   supercont1.271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-74_AA_;
KW   BEL-74_AA-LTR; BEL-74_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6876
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.271; Positions 1313141 1306266.
XX
CC   Positions [5837-6415] - Integrase core
CC   'AGCAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1487..6793
FT                 /product="BEL-74_AA-I_1p"
FT                 /translation="MAPGIKKQPTLKLLMVQLKNIQTSLDDILRFVQNYEP
FT                 TCTASAVNVRLHSAENLWEKYGTVLNDIQAHDDFEDEEGTFDQARLIYSDR
FT                 YYDCVSFLMDKAKELQGPDDAIDISMRGNETLSAGHGMMDHVRLPQIKLQI
FT                 FNGNIDEWISFRDLYTSLIHRKVDLPEVEKFHYLKGCLQGEPKGLIDPLKI
FT                 TRNNYQVAWEMLLKRYDNSKQLKKRQVQALFSLPTLSKESVTDLHTLMDGF
FT                 ERIVQNLDQVIKPEEYKDLLLVNLLTSRLDPVTRRGWEEQSSTKDQDTLAD
FT                 LTDFMHRRICILESLPSKASDVKGSQQVQQPSRYKSSAVKASCGSVQSSGG
FT                 RCVVCKENHPLYMCSSFQRLSVRERDGVLRSNALCRNCFKSNHQAKECPSK
FT                 YLCRSCKGRHHTMVCFKAEKNETAKVAAVTSTPTECVETSGSTSQVVNMVA
FT                 TESSVSGSSQQFSSQVLLATAVVIVEDDEGSQFPARALLDSGSESNFITER
FT                 LSQRIRTQREKVDISVLGIGQVAMKVKYKIQALVCSRVSEFSRNVNFLVLP
FT                 RVTADLPTAKVNTAGWSIPNGISLADPAFFSPGAVDMVLGIEFFFDFFESG
FT                 RRISIGTQLPTLNESVFGWVVCGGLTKSTEGLRVNCSTASTATLEELVTRF
FT                 WISEEVGGTKILSSEEKRCEELFQRTVRRDSNGRYFVSLPKDEDAISRMGE
FT                 SRDIAFRRFQGTERRLARDASLKEQYHKFMAEYVQLGHMTKVDGMAESDKR
FT                 CYLSHHPVIKEASTTTKLRVVFDASCKTSSGVSLNDSLLVGPIVQEDLRSI
FT                 MLRSRMKQVMLVADVEKMFRQIFILPEDRHLQCILWRFDSADPVDVYELNT
FT                 VTYGTKSAPFLATRTLNQLAMDEEHQYPLAAKAATEDTYMDDVITGADTIQ
FT                 AACELRVQLEEMTMKGGFRLRKWASNNPTVLEGISEDNLAIRLSEGIDLDP
FT                 DSTVKTLGLTWLPNTDQLRFKFDIPLRSFSQQLSKRQVLSVIATLFDPLGL
FT                 LGAVITTAKTIMQLLWKFRNERDQALDWDQPLPSTVGEIWRAYYDQLPLLN
FT                 DVRIDRCVTIPEAIKIEIHCFSDASTKAYGGCVYVRSQDGQGGLKVRLLSS
FT                 KSKIAPLKTQTIPRLELCGALLTAQLYEKIRDSIRTDAQAFFWVDSTCVLR
FT                 WIQASPNVWNTFVANRVAKIQAITEPSQWFHVSGKENPADLISRGIAPGDI
FT                 VKNTFWWEGPEWLKSTREYWPLSPLESFPDEESQERRRTMVSCAITLDAEF
FT                 NEWYLGRFSSYSDLLRKTAYWLRLMRLLRKDMRDRVVANSRLSNEELNEAE
FT                 LIMVRRVQKEVFADEWNALTKSGTVPRRSPLRWFHPHIAEDNVIRVGGRLE
FT                 HSAEAYDVKHPIVLPARHAFTRLILNHYHLKLLHAGPQLLLGVVRLRFWPL
FT                 GGRNLARHVVHQCIKCFRSKPSAIQQFMGDLPSSRVTPSRPFSQTGVDYFG
FT                 PMYIRPAPRKPAIKVYVAIFVCLCTKAVHLELVMDLTTDRFLLALRRFVAR
FT                 RGKCQDIYSDNGTNFVGARNRMKDFLQLLKSPNHREKVSKECNEDGIRWHF
FT                 SPPSSPHFGGLWEAAVRSAKNHLLKVMGESCPSAEELNTLLVQVEGCLNSR
FT                 PLTPMSDDPNDLEPLTPAHFLIGTSLQALPEPNLESVALNRLDRFQLMQRI
FT                 LQDFWKRWRMEYLCQLQGRFKRWNSPIKIEVGRMVIIRDENMPPMKWKMGR
FT                 ICKLHPGTDGVVRVVTLKTSSGELKRAVEKLCFLPISEDQPNQHPAEQK"
XX
SQ   Sequence 6876 BP; 1846 A; 1472 C; 1694 G; 1864 T; 0 other;
     tttatggtcc ttcgaaccgg attggatgga ccgggaaggg acagaaagga cctggaaaac        60
     ttattgtgcg ctacttggcg ccattgcgtg gcatccgtct atggtataag gacaattaga       120
     ggaagccatc gcactcaagg acaattgtcg cagtagccat caatttcgcg aacaattagc       180
     ggatcgccat cactgcatgc tacaaaggat cgaggatagt gtggtctgga catccatcga       240
     atggaacctt ttcataggtg agtggaacca tcactatatg tccagccgaa gcaaggcaat       300
     tttcgattct aacacctgtc atcatattgc atgatacaca aaccatctgc tgtaaccgga       360
     atttgaggat cgtttgcgga ttcgaggcta attggcttga ttggttggtc gaggcttatc       420
     tgactgattg actggctggt acaaggactg ttgattgagc tacccggttt gatcacacca       480
     ctggcacgaa tttggactac tgaaccagcg gacaatctgg ttctccaggt aaatattttt       540
     aagttcagta tatgtccagt cgtcgttagg attgcatgag tctaacacct tatttcgatg       600
     tttcttccct ggatcggatg gatttatcaa ccgtcgagac gatggacctt ggcgactact       660
     gaagaatgta ttggaggaca atcgttcaga caatttacat cggttccatc gcatcactct       720
     ggtttggatg agcttctagt acttcaacaa cccgaggcaa ctgcttgatt caccaaaatt       780
     gaagaggctg tgacgtatat tttctatatt ggtgagtgct atgaactgta tatgtcaccg       840
     aagcgggaca cagaaatata cacattgtaa tttgaattca tcctcttcaa cttattggcc       900
     acgaatccct gagaacaaac tgttcgttac cagaacaact gtctcgattt cgctggattt       960
     attcgttttc tgattggatt ggtgctgcta aggtttctgg gttagtgaac aagtatatgc      1020
     cttgccgagg cttcaatctc tgtatactac atgcccgatt cctcttcttg gacctcttcc      1080
     cttaaatccc gatgaaattt gctgttggtg agaaattgat cgctgttaat gagtttgctg      1140
     taattgagct tggaatttgg gatcccttcg acgatggaat gcatttgaat agctgttagt      1200
     tctcgtgggt gagttctaca gtatatgtct gtcgaagcaa ggactatcgg atactacatt      1260
     tggctcttct cctctttccc caacgattcg atactgttgg atgagtggcg tttccgaacc      1320
     gaatcaccgt gacgactgga ttcatttgga tgaggtgtag ttgatcccag tgcagcttac      1380
     tattctgtca ggtaggcttc tacagtatat gtcagccgaa gccgtggact ttggatctct      1440
     acaccatcat atttctcttt gccggatcga gtgacgtgtt tcaaccatgg ctcccgggat      1500
     taagaaacaa cctaccctta agctgttgat ggtccagctt aaaaacatcc agacatccct      1560
     ggacgacatc ttgagatttg tacagaacta cgagccgacc tgtaccgcaa gcgctgtaaa      1620
     tgttcgtctg cacagcgccg agaatttgtg ggagaaatat ggcacggttt tgaatgacat      1680
     ccaagctcat gacgattttg aagatgagga agggacattt gatcaggcta ggttaatcta      1740
     tagtgataga tattacgatt gtgtatcatt tctcatggat aaggccaagg agttgcaggg      1800
     acctgatgat gctattgata tatcgatgcg agggaacgaa acgttgtcag ctgggcatgg      1860
     catgatggat catgtccgtt tgccccaaat taagctccaa atcttcaacg ggaacattga      1920
     tgaatggatc agtttccgag atttgtatac ttctctcatc cacagaaagg tagacttacc      1980
     tgaagtagag aagttccact acttaaaggg ttgtcttcaa ggtgaaccaa agggcctaat      2040
     tgatcccttg aagataacaa ggaacaatta ccaagtagct tgggagatgt tgcttaagag      2100
     gtatgacaac agtaagcagt tgaaaaaacg tcaggttcag gccttattca gtttgccaac      2160
     actttccaaa gaatctgtaa cagacttgca cactcttatg gacggatttg aaagaatagt      2220
     gcaaaatttg gatcaggtca tcaagcccga ggaatacaag gaccttttac tggtcaactt      2280
     gttgacttca cgtctagatc cagtgactcg tagaggatgg gaggaacaat cttcaacgaa      2340
     ggatcaggat acgttggcag atctaaccga tttcatgcat cgacggattt gtatcttgga      2400
     atcactgcca tcgaaggctt cggacgttaa aggatctcaa caagttcaac aaccgtcaag      2460
     gtacaaatcg tcagctgtga aggccagctg cggttctgtt cagtcgtctg ggggacgatg      2520
     tgtggtttgc aaggagaacc atccacttta catgtgttct tcattccaac ggttgtctgt      2580
     gcgggagaga gatggggtat tgagatctaa tgcactgtgc agaaattgct tcaaatcaaa      2640
     tcatcaagca aaggaatgtc catcgaaata cttgtgtcgt agctgcaagg gtcgccacca      2700
     taccatggtg tgcttcaagg cggagaaaaa cgaaacagcg aaggtcgctg cggttacctc      2760
     tactccaacg gaatgtgtag agacttctgg ttcaacatcc caggtggtga acatggtcgc      2820
     caccgaatcc tcggtttctg gttcatctca gcagttttcc tctcaagttc tattggctac      2880
     tgcggtcgtt atcgtggaag atgacgaagg tagtcagttt ccggctcgcg cactactaga      2940
     ctccggctct gaaagcaatt tcattaccga acgtctgagc caacgtattc gaactcagcg      3000
     agagaaggtg gacatttcag ttctcggaat cggtcaagta gctatgaagg tgaaatacaa      3060
     aatccaagca ttggtttgtt cccgagtatc ggaattctct cggaacgtca acttcctggt      3120
     tcttccaagg gtaacagcgg atttgcctac ggcgaaggtg aatacagcag gatggtcaat      3180
     acctaatgga atcagcctag cagatcctgc gtttttcagc cctggtgcag tggacatggt      3240
     gttgggcatt gagtttttct tcgatttctt cgaatctggt cgaagaattt ccattgggac      3300
     acaactgccg acactaaatg aatcggtatt tggatgggtg gtttgcggag gactaacgaa      3360
     gtctacggaa ggtctacgtg tcaactgtag cacggcttct acggcaactt tggaagaatt      3420
     agtcactcgg ttttggatta gcgaagaagt aggcggaact aagattcttt catcagagga      3480
     aaaacgatgt gaagagcttt ttcaaagaac ggttcgaagg gattccaacg gtcggtattt      3540
     cgtttcgtta ccaaaagatg aagatgccat ctctaggatg ggcgagtcac gggacatcgc      3600
     attccggcgt tttcaaggta cagaacgcag attggcgcgg gatgccagtc tgaaggaaca      3660
     gtaccacaag tttatggcag agtacgtgca gctaggacat atgaccaagg tagatggaat      3720
     ggcggaatcg gataaacggt gttatttgtc acaccatcca gtgattaaag aagctagcac      3780
     cactacaaag ctgcgtgttg tcttcgacgc gtcatgcaag acgtcgtctg gagtttccct      3840
     caacgattcc ttgcttgtag gcccgattgt acaagaggat ttacgttcca tcatgcttcg      3900
     gagtcgcatg aagcaggtaa tgttggtagc cgacgtagaa aagatgttcc gacagatctt      3960
     cattctgccg gaggaccggc atttgcaatg catcttatgg cgttttgatt cagctgatcc      4020
     tgtggacgtg tatgaactca acaccgtcac gtacgggacg aaatctgcac ccttcttagc      4080
     aacacgcacg ttgaaccaat tggcaatgga tgaagaacat caatacccgc ttgctgcaaa      4140
     ggctgccacc gaggatacgt atatggatga cgttataaca ggagcagata cgattcaagc      4200
     agcttgtgaa cttcgtgtac agctggagga aatgacaatg aagggaggat tcagactgcg      4260
     caaatgggca tccaataacc cgacagtact ggaaggaatt tccgaggata atctggcgat      4320
     tcgactatcg gaaggcatag atttggatcc cgattcgacc gtaaaaaccc ttggattgac      4380
     gtggttgccg aataccgatc aactacggtt caaattcgac attccattac gttcgttttc      4440
     tcaacaactt tcgaaacggc aagtcttatc ggtgattgcc actctgtttg atccgcttgg      4500
     acttcttggt gctgttatta ccactgcaaa gacaattatg cagctcttgt ggaaattcag      4560
     gaatgagaga gatcaggcat tggattggga ccaacccttg ccttcaacgg tgggtgagat      4620
     ttggagagcc tactatgacc aacttcctct gttgaacgat gttcgtatag accgttgtgt      4680
     gaccattccg gaggcaatta agatcgaaat tcattgtttt tcggacgcat cgaccaaggc      4740
     atacggagga tgtgtctacg taagaagcca agatggacag ggaggattga aagtccgact      4800
     gctgtcttca aaatctaaga tagcaccctt gaagacgcag actattccga ggctagagtt      4860
     atgtggcgca ctcttgaccg cacagctata cgagaagatt cgtgactcca tcagaactga      4920
     tgcccaagcc ttcttttggg tcgattctac ctgtgttttg aggtggatac aagcttcgcc      4980
     aaacgtgtgg aatacgttcg tagcgaaccg agtggcaaaa atccaggcta tcacagagcc      5040
     gtcccagtgg tttcatgttt cgggtaagga aaacccagcc gatttgatct ccagaggaat      5100
     tgccccagga gatattgtta aaaacacctt ttggtgggaa ggaccagaat ggttaaaatc      5160
     aactcgtgag tattggcccc tgtcaccttt agaatcgttt ccggatgagg agagtcaaga      5220
     gcgacgccgt acgatggtgt catgtgcgat tacgttagat gccgaattca acgaatggta      5280
     tttgggaaga ttttcgtcct attccgactt gctccggaaa accgcgtatt ggttgcggtt      5340
     aatgcgacta cttagaaagg atatgcgaga tcgagttgta gccaatagtc gattatcgaa      5400
     tgaagagctt aacgaggcag aattgatcat ggttcggcgt gtgcaaaagg aagtctttgc      5460
     cgatgagtgg aatgctctaa cgaagagcgg aacggttcca agacggtcgc cacttcggtg      5520
     gtttcatcca catatcgccg aagacaacgt tattagagtt ggcggacggc tcgaacattc      5580
     ggcagaagca tacgacgtaa aacatccaat tgtccttcct gcacgtcatg catttacacg      5640
     attaatcctc aatcattacc atttgaaact cctacatgct ggaccgcagc tacttctggg      5700
     agttgttcgg cttcgattct ggccattggg tggacggaac cttgcacgac atgttgttca      5760
     tcaatgtatt aagtgttttc gatcgaaacc ttctgcaatt caacagttta tgggtgacct      5820
     gccatcatca cgtgtcacac catcaaggcc attctcacaa actggcgtag actatttcgg      5880
     gccaatgtac atcagacctg caccacgtaa gccagctatt aaggtatatg ttgcgatttt      5940
     cgtgtgtctc tgcaccaagg ctgtccattt ggagttggtg atggatttga ctaccgatcg      6000
     tttcttatta gctcttcgtc gtttcgttgc cagaagaggg aaatgtcaag acatctattc      6060
     cgacaacgga actaactttg tcggtgcgag gaatagaatg aaggatttcc tacaactact      6120
     caaaagtcct aatcatcgcg agaaggtttc taaggaatgt aatgaggacg gaattcggtg      6180
     gcatttcagt ccacccagct cgccccactt tggaggactg tgggaggcgg ctgtgagatc      6240
     agcaaaaaat catcttctaa aggtcatggg tgaatcgtgt ccttcggcag aagaattgaa      6300
     tacgctttta gttcaagttg aaggatgtct caattcacga ccccttactc ccatgtccga      6360
     tgacccaaat gatttggaac ccttgactcc agctcatttt ttaattggca cttcgctcca      6420
     agcattacca gaaccaaatt tggaatccgt cgccttgaat agacttgatc gctttcagtt      6480
     gatgcaaaga atactgcaag atttttggaa acgttggcgt atggagtatc tgtgtcaact      6540
     tcaaggaagg ttcaaacggt ggaacagtcc gatcaagatc gaagtcggga gaatggtaat      6600
     tattcgtgac gaaaacatgc cccccatgaa atggaagatg ggtaggattt gcaagcttca      6660
     tcctggcacc gatggagttg tacgcgtcgt cacattgaag accagctcag gagaattgaa      6720
     aagagctgta gagaagttgt gtttcttacc aatctcagag gatcagccta accagcaccc      6780
     agcagaacaa aaatgaatcc caccctttcc ccatttccct tcgaagagga ttttctttta      6840
     tttcagaaat cataccaatt tctgggtggg tgaggg                                6876
//
ID   BEL-74_AA-LTR repbase;    DNA;    INV; 712 BP.
XX
AC   supercont1.271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-74_AA_;
KW   BEL-74_AA-I; BEL-74_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-712
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.271; Positions 1306265 1305554.
XX
SQ   Sequence 712 BP; 210 A; 147 C; 175 G; 180 T; 0 other;
     tgtctgatag caggctcaac cccccctgtt acttcaaccc tagaactgct tcttaactag        60
     gccaacgaac gcagcagcaa actggcatct ataaacacta gcgtaaaccc agctacaata       120
     gatgtttggg atatctacgc agacggctat catgagcggg agcagatcgg atcggggatc       180
     atctcttaca cagggagtct gcatactcag attaatgacg tcaacccgat acgttctgca       240
     gtggtgaata atctatgaga ggagatgaga ctgagtgata ctcacaagac cgatggactg       300
     agccgaataa aaacatagaa tgctgctttc gtaggtaggc gaggatcaac tgtagagtgg       360
     aagttcagtt gcatctcgat cggtcggcag atatgtgggc ataggagagc ccactcggtt       420
     gaattttaat gtgttagact taagcgttca atgttagttt ttaagatcca aaataaatgt       480
     agtgatgtgt agatcgtgtt ttaaattcag taaacgtgag tgtttttata agtgcccgga       540
     agaagccctc gaaaaggttc caaaggccca ataactcaag gagagtgagt tggaaccact       600
     aagaccagtg ttcttctgcc agcaacatcg accttggtca aggtcgaata catcttcgag       660
     tgttggagga attattgcaa ggctatcgaa gtgagtttct cgtcccccaa ca               712
//
ID   BEL-74_CQ-I repbase;    DNA;    INV; 6169 BP.
XX
AC   AAWU01004636;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-74_CQ_;
KW   BEL-74_CQ-LTR; BEL-74_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6169
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 293-293 (2011).
XX
DR   GenBank; AAWU01004636; Positions   11079    4911.
XX
CC   Positions [5216-5800] - Integrase core
CC   'CTATT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1373..6169
FT                 /product="BEL-74_CQ-I_1p"
FT                 /translation="MFQTVMVRYPNESPAIKLYHLKNSLVGRAAGKIDQDV
FT                 INNNDYESAWQLLEDTYEDERLIIDTHIDALLDLPKLTRENGDEMRKLVET
FT                 CTKHVDALKNRELPVEGLSEMILVNLISKRLDRESRKLWETSLVRGDLPSF
FT                 DDLIDFLKDRSRVLQRLPSNASTSQSQAAPRAPGQQQVVAKPRQTKLFVQT
FT                 NKESCPCCSSSHPVFKCTEFRKLPVGERFEKVKKAGMCYNCLKPQHRADAC
FT                 ASTQHCKTCGKPHHSLLHSERPENPKKHTEPDQPKNPVDAEKQEETPAAPE
FT                 QRTVSCCTQTQAAQKQIFLSTAKIVVFGSGNATTTCRALLDCCSESNIITE
FT                 RLARKLNMQMLEMKPPITICGLNGMKTTANKIVQTKVSSRVGDFTAVLDFI
FT                 VTPSITELPTGKVETHTWPLPAGIELADPTFNVPDDVDVIIGAELFYDVLK
FT                 KGRVKIGGDFPTLAETAFGWVVSGPARTKLPAGQRRVCQLATTFEDVNRTL
FT                 SKFWELESGYFSSKMTVTERTVEKHFEETHSRNAEGRYVVRLPFNELKSQL
FT                 GDSYENAKRRFGRLMVGLTKNPSKREAYTQFMKEYVALGHMKEVNHSPEEG
FT                 YFLPHHAVYKEASSTTKVRVVFDASAATTTGVSLNDTQLVGPTVQSDLVTI
FT                 MLRFCTHQIVLTADVPKMYRQVQVHPDDRKYQRILWLNDANEMATFELATV
FT                 TYGCSSAPYLATKALTQLASDEADKFPKAVRVVKEDSYIDDFLTGGKTAAD
FT                 VVEIYEQLKDMLSRGGFGVHKFCSNSAEVLKHIPAELQEKLVDFETSEIND
FT                 TIKTLGLIWNPNYDYFTFNVPHLVLKGSRPTKKIVLSEIGKLFDPLGFLGP
FT                 VVTKAKLMMQKLWELKLGWDTELPDEQMQRWLVFREQLVLVRNIKKRRCVI
FT                 PADAKKLELLGYCDASKAAYGAVLYVKSELKHGTINIQPVCSKSRVAPLKP
FT                 TTIPRLEACGMVVLAELTHKTLGALNVKFDRVRLFSDSMICLNWLKKSPAQ
FT                 LNEFVCNRVATIVELTQNYEWGFVRSENNPADSLSRGLDPEELIDDELWWD
FT                 CDPNQRQPSDTSEAEVPELADEDLPELRSAKVVLAVTVEKPCTNFNRLSNI
FT                 NRLYRAWAYVWRFIEITRSKKRNPPSNPLTASELSRATTTIVKIIQQEAFT
FT                 EEIKQLRTGQAKRNKLSSLAPFLDGDGLIRVGGRLKYSNIPYAGKHQILLP
FT                 EKHPFVTLLVRHLHELNLHVGQNALVSMIRQQYWPIKVKNTVKRVTFDCVI
FT                 CFKHRPPQVHQPMGELPSYRVTPAPVFASTGVDFAGPFTLRESGRKPKFYK
FT                 AYVAVFVCMAVKAVHLELCTDLRTETFLAALQRFTSRRGLPSNLHSDNATT
FT                 FVGAKNELAELRKLFENQVHKDKLADFCSSKGITWHFIPPRSPHFGGIWEA
FT                 GVKAMKYLLKRVVGETRLTYEEMTTFLAQAEATMNSRPMCPLSDDPNDLQA
FT                 LTPSHFLIGRPAHALPEPSYEQEKIGRLSRWQHVQYMREHFWKRWSADYLH
FT                 TLQQRQKWKDGVLDIKVGALVLLREENIPPQQWKKGRITATHPGEDGVVRV
FT                 VTVKTASSEYKRAVTRICLFPDVDSNDPTGGV"
XX
SQ   Sequence 6169 BP; 1614 A; 1635 C; 1773 G; 1147 T; 0 other;
     ttttggtcct atcggaaccg gataaggaca tttcgcgatt cggaagtgac tcggttacgc        60
     ggatcggtcg cgagtgcaag aaaagttctc ggatttgcat cacgtgcaaa agcgtgccgc       120
     cattttgtac cgtcgcgtcg gtggtgtgca caaaagagac gtgtggaaga agtgcgaggc       180
     ttctagaagc acgaaaagta aatctgcacc gtgtgcggaa attgtcccgg atcggcgcta       240
     cgccaccgga cgcataaaaa gtgaagtgtt taagacgcac caagtgcgga agatcgccac       300
     gcggtcatct accggattgc cgctacgcca ccggtctgga agaaaatagt gaaaagtgac       360
     gcaccaagtg cgtaggtcgc caagcggtcg ttttctccca gattggcgcc gcgcctttgg       420
     taggaaaaag tgaagaattg aagtgtcgca ccaagtgcgg tttgatcgcc acgcggtcga       480
     gtgtcccgga ctggcgcttc gccaccggaa gtgaaaagag aaaaagctcc ctgcttgcga       540
     gttcgtcgag cgaaagaaga gaggaaaagc tccgtgcttg tgagttcgtc gagcgaaaga       600
     agagaggaaa agctccgtgc ttgcgagttc gtcgagcgaa agaaaaaaaa agtgtgaggt       660
     tatacgtaac ctaaagtgag agtgcaaatg aagaaaaagc taaatgagtg aacaacaaaa       720
     gaaagtaaaa gaagaaatca gtgctactcc aagagtaacg agaagtgtaa caaggaaaaa       780
     tttgctagcg gcgttaacgg gatcgggcgc cgatcgtgag gacgctgtca cgacagttga       840
     aaaagctgta cagtttccag agccgttgct acctgccgga agcgccgtgc tgagtattgc       900
     cgaacaaaag gagttggatc ggcggaaaaa ggaacgggaa aaaatggagc gcaacttgga       960
     gaacctgagc gatcgtgtgg acacgattaa gcagaagttg ttccgcatga aggaggcgct      1020
     cgggacgatg gacaatgtgc actacctcaa cctccagttg caaacactgc agcgctgcaa      1080
     cgaggaattc gacacgctgc acagcgaaat cgtcgctctc gtcaagaagg aagacaaagt      1140
     taagtggaac caggagtacc tgaacttcga agccctacac ggtgagttgt acgtgaacgt      1200
     gcagacaaag atcgccaatc tccagaaagc tgattcgaac cgggctttga cattgaacgc      1260
     cagcgcgtca gagttcctcc cgagaacgca agtagtacaa aacgtccccc acctgaacgt      1320
     gccgttgcct tccttcgacg gagccccaga gaattgatac gcattcaaat gcatgttcca      1380
     aacagtgatg gttcggtacc ccaacgaatc gccagcgatt aaactgtacc acctgaaaaa      1440
     ctctctggta gggcgcgctg cgggcaagat tgatcaagac gtgatcaata ataacgacta      1500
     cgagtcggca tggcaactgt tggaagacac atacgaagac gagcgcctaa tcatcgatac      1560
     ccacatcgat gcgttgctgg atcttccaaa gctgacacga gagaacggtg acgagatgcg      1620
     aaagctggtg gagacttgca cgaagcatgt ggacgccctc aagaatcgtg aactgccggt      1680
     ggagggcctg tcggagatga ttctcgtcaa cctgatcagc aagcgattgg atcgagagag      1740
     ccgaaagctg tgggagacgt cgctagttcg tggggatctt ccgtctttcg atgacctaat      1800
     cgacttcctc aaggatcgga gccgagttct ccaaaggttg ccgagcaacg ccagcacgag      1860
     tcagtcacaa gcggcaccga gagcccctgg tcagcagcag gtagtggcga agcccaggca      1920
     gacgaagctg ttcgtgcaaa ccaacaagga gtcttgtccg tgctgttcga gctcgcaccc      1980
     cgtcttcaag tgtaccgagt tcaggaagct gcctgttggt gagcggtttg agaaggtgaa      2040
     gaaggcaggt atgtgctaca actgtcttaa acctcaacat cgtgccgacg cctgcgcatc      2100
     aactcagcac tgtaagacct gtggcaagcc gcaccacagc ctcctccaca gcgagcgccc      2160
     cgaaaatccc aagaagcata ccgaaccaga ccagccgaag aacccagtag acgcagagaa      2220
     gcaagaagaa acaccagctg ctcccgagca gcgcacagtg agttgctgca cgcaaacgca      2280
     agcggcccag aagcagatct tcctgtctac tgcgaaaatc gtggtgtttg gttccggcaa      2340
     tgcgactacg acctgtagag cgttgcttga ctgctgttcc gagtccaaca tcatcacgga      2400
     gaggttggcc agaaagctga acatgcagat gctggagatg aaacccccga tcacgatctg      2460
     cggactgaac gggatgaaga cgacggcgaa caagatcgtc cagacgaagg tgtcgtcgcg      2520
     agtcggcgat ttcactgccg tcctcgactt catcgtaacg ccctcgatca ccgaattacc      2580
     aacaggtaag gtagaaaccc atacttggcc cctccctgct ggcattgagc tagctgaccc      2640
     cacattcaat gtccctgacg acgtcgacgt gataatcggc gctgagctgt tctacgacgt      2700
     cctgaagaag gggcgtgtga agatcggcgg tgacttcccg acactagccg aaacagcatt      2760
     cgggtgggtc gtcagcggtc ctgcgcggac caagctacca gctgggcaga gaagagtctg      2820
     ccaactggcc accacgttcg aggacgtcaa ccgtactctc tccaagtttt gggagttgga      2880
     gtcagggtac ttctccagca agatgaccgt gacggaacgt acggtggaga agcatttcga      2940
     ggagacgcac agccgcaacg ccgaaggacg gtacgttgtc cgactaccgt tcaacgaact      3000
     caagagtcaa ctgggcgact cgtacgagaa cgccaagcgt cgatttggga ggctgatggt      3060
     tggccttacc aagaacccat ccaagcgaga agcctacacg cagttcatga aggagtacgt      3120
     ggcgttgggc cacatgaagg aagtgaacca cagcccggag gagggctact tcctaccgca      3180
     ccacgcggtc tacaaggagg ccagctcaac gacaaaggtt cgagtggtct tcgacgcctc      3240
     ggcggcgacg acaacgggcg tgtccctcaa cgacacccag ctggtgggcc cgacggtgca      3300
     gagcgacctg gtaacgatca tgctgcgctt ctgtacgcat cagatagtgc tcacagcgga      3360
     cgtacctaag atgtaccgac aggtacaagt gcaccctgac gatcgaaagt accagcgaat      3420
     tctgtggctc aacgacgcaa acgagatggc tacttttgaa ctagcaacag tcacctacgg      3480
     ctgttcgagc gcgccgtacc tcgccacgaa ggcgttgacg cagctggcct cggacgaggc      3540
     ggacaagttc ccgaaagcgg ttcgagtagt caaggaggat agctacatcg acgactttct      3600
     caccggcgga aaaacggcgg ctgacgtcgt cgagatctac gagcagctga aggacatgct      3660
     gagtcgaggt ggattcggtg tgcacaaatt ctgctccaac agcgccgaag tcctgaagca      3720
     catcccggcc gagctccagg agaagctggt agacttcgaa acttccgaga tcaacgacac      3780
     gatcaagacg cttgggctga tctggaatcc gaactacgac tacttcacct tcaacgttcc      3840
     acacctggtg ctcaagggaa gtcggcccac aaagaagatc gtgctctcgg aaattggaaa      3900
     gctctttgac ccacttggtt ttctgggacc ggtggtaacg aaggcgaaac tgatgatgca      3960
     aaagctttgg gagctaaaac ttggttggga caccgagttg ccggacgaac agatgcagcg      4020
     gtggttggtg tttcgcgaac aactcgtgct tgtgcggaat atcaagaaga ggagatgcgt      4080
     catcccggct gacgccaaga agttggagct gcttggatac tgcgacgcct cgaaggcggc      4140
     gtacggagcg gtcttgtacg tcaagagcga gctcaaacac ggcacgatca acattcaacc      4200
     ggtgtgcagc aagtcacgcg tcgccccact gaaacccacg acgatccctc gactcgaagc      4260
     atgcggaatg gtggtgctgg cagagctgac acacaagacg ctgggagccc tgaacgtgaa      4320
     gttcgacaga gtgcgccttt tctccgactc catgatctgt ctgaactggc tgaaaaagtc      4380
     cccggcgcaa ctgaacgagt tcgtgtgcaa ccgagtggcc acaatcgtcg aactgaccca      4440
     gaactacgag tggggattcg tccgatcgga gaacaacccc gctgattcgt tgtcacgagg      4500
     cctggacccc gaggaactga tcgacgacga gctttggtgg gactgcgacc caaaccagcg      4560
     acagcccagt gacaccagcg aagccgaggt tcctgaactg gctgatgaag atctcccgga      4620
     gctgcgcagt gcgaaggtcg tccttgctgt aaccgtggag aagccgtgca ccaactttaa      4680
     tcgcctcagc aacatcaacc gactgtaccg cgcgtgggct tacgtgtggc ggtttattga      4740
     gatcacccga tcgaagaaaa ggaatcctcc cagcaatccg ttgacggcga gtgagttgtc      4800
     cagggcaacc acaaccatcg tcaagatcat ccagcaggag gcattcacgg aggagatcaa      4860
     gcaactgcgt acgggacaag cgaagcggaa caagctgtcg agtcttgcgc ccttcctaga      4920
     tggcgatggc ttgattcgag ttggcgggcg attgaagtac tcgaacattc cctacgccgg      4980
     caagcaccaa atcctgttac ccgaaaagca cccgttcgtc actctactgg ttcgccacct      5040
     gcacgaactg aacctgcacg taggacaaaa cgcactagta tcgatgatcc gccagcagta      5100
     ctggccgatc aaagtgaaga acacggtcaa gcgagtcacc ttcgactgtg tcatctgctt      5160
     caagcacaga cctccacaag tacaccaacc gatgggtgag ctgccaagct accgtgtgac      5220
     acccgcgcca gtgtttgctt cgaccggtgt ggattttgct ggacccttca cactgcgaga      5280
     gagtggcaga aagccgaagt tctacaaagc ctacgtagca gtgtttgtgt gtatggcggt      5340
     caaggcggtg catttggagc tgtgcacgga tctgcgtacg gagacgttcc tggcagcact      5400
     gcagaggttc accagtcgac gaggcctccc atcgaacctg cactccgaca atgccacgac      5460
     attcgtcggt gccaaaaacg agttggccga actgcggaaa ctgttcgaga accaggtgca      5520
     caaggacaag ctggccgact tctgcagttc gaaaggcatc acctggcact tcattccacc      5580
     ccgtagccct cactttggcg ggatatggga ggcaggagtc aaagcgatga agtacctgct      5640
     caagcgcgtc gtgggtgaaa cacgactcac ctacgaagag atgacgacat tcctggccca      5700
     ggctgaagca acaatgaact ctcgtccgat gtgccccctt tcggacgacc caaacgattt      5760
     gcaggctttg acgccctccc acttcctgat cgggcgaccg gctcacgccc taccagagcc      5820
     ctcgtacgag caggagaaga tcggcaggtt gtccaggtgg cagcacgtgc agtacatgag      5880
     agagcacttt tggaagaggt ggtctgcgga ctatctccac acgttgcagc agcggcagaa      5940
     atggaaggac ggcgtgctgg acatcaaggt tggagccttg gtgttactgc gagaagagaa      6000
     cattccaccc cagcagtgga agaagggccg catcacagcc acacatcccg gcgaggacgg      6060
     tgtggtgcgt gtggtcaccg tgaagacggc gagcagcgag tacaagcggg cagtgaccag      6120
     gatctgcctg tttccggatg ttgactctaa cgacccaacg gggggagta                  6169
//
ID   BEL-74_CQ-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   AAWU01004636;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-74_CQ_;
KW   BEL-74_CQ-I; BEL-74_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-219
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 294-294 (2011).
XX
DR   GenBank; AAWU01004636; Positions    4910    4692.
XX
SQ   Sequence 219 BP; 76 A; 64 C; 30 G; 49 T; 0 other;
     tgattgcgct gcattgaaat ttacagtcca catttttccc agtgtaccca cactaacaca        60
     ttgtaaaccc caaacccatc atacctcaaa actatgacac tttgacactg aaaaacacaa       120
     aaaaaaaccg ttcttgcacc gagcagacgt gttcccttta ttcgctcgaa accacgaaag       180
     aattcgcgaa gtccgaccag tgaaaaattc ccccgaaca                              219
//
ID   BEL-74_DTa-I repbase;    DNA;    INV; 3513 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   13-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-74_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3513
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Both ends are uncertain.
XX
SQ   Sequence 3513 BP; 842 A; 882 C; 957 G; 832 T; 0 other;
     acttaacatg gtggcccatg aggggaagtc tgcaagcatt tgttaataat gtgcaaacaa        60
     tttaaatata tataaaagca taactacgaa ggttacaaga agggcgcggg ggaagctcag       120
     ttagttcgtg cagtgcaact tcacgcggtt cgacgaaccc agatgaaaca taccggatta       180
     ttgttaagcg ccgctttaga taatagctta tctgcgctca ggcgggacgt accgtttgtt       240
     ttctccgctt tggttttgta ctggaatttt gggtaaggaa taagtgtcct agctgagcgg       300
     cattagctgg gaaggtttta tttacactat tcaacatgga tctggaacca gaaactccgc       360
     tgtccttgga tcaatttatt aacctccaag ttgacaggca caacgccttg aaaaacattt       420
     tgcaaaaata tagaaaggac gcggcaagta gtacaacgca ggtatatttt aaaagacgtt       480
     ttcagcaaat agaggaattg cggagtgcgt ttttgatcgc tcacgagcag gttgtcaaca       540
     tagacggcta tgcggaatca gcgtatgtta ccaagcattt acgttccgag tttgaagaac       600
     ggtacatgga cgcctattgt cttttcgccg aggatcaaga gaagtttgtg ccagcggagt       660
     ctcagaccgc gacggtggcc gctgctgtcg gaccgacggc tgaggttcgc atgacgatgc       720
     cacaaatgac agttcccaaa ttctcaggtg cggccgtgga ctggccaggt tattttgacc       780
     cattcaacag ccttgtattc aacaatctgt cgcttaccgg gatgcaagag ctgcattttc       840
     ttaaggaatc gctcccggtc ggacgcgata acgacgacgt gcgccaaatg cagctcaccg       900
     actcaaactt ctcggtagct tggtccctga tgctaaagcg ctacaacaac ccgcgcctgg       960
     ttttcgctca tcacatgaac gctgtttttt tgctgccgaa aatacagaag cagtcgtcgg      1020
     aagctcttcg gactatgctc agcaccgtca acgtgtgtct cgccgccttc aagcgcgtca      1080
     aggccttaga aggggaggca catcattgac tggcgtatgc ttaaggtgcc atcattgcga      1140
     cggcggtcac gttctgcgcc gttgtccgac gtttttagct atggaagcgt ggaggcgcaa      1200
     ggaggttgta ggcagggcga agctgtgcac caactgcctc agcaaggctc atgcgcttcc      1260
     ccgctgcacc agcaacaaag ggtgtcaggt ttgcggtcag cgtcatcata cgctgttgca      1320
     cttgccgagt ggatctcagc ccgccatcgc tccgcagacg ccctcggccc atacgtcgtc      1380
     gctgcagccg cgatcttcga tggggtccag gagcaagcac atggttaact tcaaggttct      1440
     aagcactaat aactgttttt cgttagacgt ctcttcggca tacgtgttgg acacggtcac      1500
     ttcgctgctg ccctgcacaa gcttctcgcc gcaacgatgg acccacattc atggacttcc      1560
     gctggctgat ccggagtact acccttcgaa gaggattgac cttatcttgg gagcggacct      1620
     catcgcgcag atcatgatgt ccggtatgcg aataggaagt tctacggagc caattgctca      1680
     acagactcag ctgggatgga ttctctcagg tcaagccgcc gacgcgacca actccaccag      1740
     gatccgttgc catcatgtag tctccgaggc ggagtcgctt ctgaagggct ttctcgagat      1800
     cgagaccgta ccagaccgga cggctcgtac ggaggaggat cggtggtgcg aatcgttctt      1860
     ccaaagaacg cattccagac gtacggatgg acggtacgta gtgcgcctcc cttttaaagg      1920
     gtatctggat cacaacatcg tgttgggacg atctcaccaa ggagccctta accggtttct      1980
     ccagctcgag cggcgacttt cggcccgccc ggtgcaaggg agacagtacg ctgaggagat      2040
     tgaggagtat tttaccttgg gacaaatcgc agccgcggaa ggatccgaga gcagtttatg      2100
     tgtacgcact ccagccggat tgcatcatgc gcttacccca ccatgccgtc tacaaggcag      2160
     aagattctgt cacgaagcaa aggatagtgt ttgacgcctc cgcgaagacc aacaacgttt      2220
     tttttttttt tttttccccc ccccccccca aaaaaaaaat ttttaggttc tcctcaattg      2280
     gcgaaagtat cgctatgttt ttgcagccga cattcaaaaa atgtatcgct gcattgacgt      2340
     tcacccagag gacacacaat atcagcggat tttatggcgg gcggcggatg gaaacatcaa      2400
     gacaaacgca ttgtcgactc tgacgttcgg gacggcatcc gcaccataca cagccattag      2460
     agtcatacac cagttggcgc aggacgagaa ggattctttc ccaagggccg ccgaggtctt      2520
     aatgggggag atatatgagg acgacatatt atccggaggt cacactatgg aggatgcgga      2580
     ggaaaagcgg atgcaggtcg tgtgagctat aaaatccgct cggatggaat tgcgtaaatg      2640
     ctcgagtaac gacccgcgac tgctaggctc tgctccgcag gagcatcgat ttgaccagac      2700
     gcttttaaat tgggatacaa gggatccggt aaaagcgttg gggatgtact gtttcaagtt      2760
     taaaatgaat tttgactttc cagattgcac gacgaaaagg actttgctgg cccctatcgc      2820
     gcgttttttc gatccgttag gtctgatagc tccggtgatc atagctggaa agctcatttt      2880
     aaaggaggtg acttcggtca aggtggcgaa cagcgaggga gtgcaggtgt cgttggactg      2940
     ggactcaccg ctgccagcag cgattctgga gcgttggcga gcgtttcgct ccgacctccc      3000
     aggaatcgag gacatcgccg tcagtcggtg gactgagtag atccggcctc cgtagccggt      3060
     gtgcagctgc atgcgttctg cgacgggtcg tcgtcgtctt atgctgcctc ggtttacatg      3120
     cgagtcgagc acgtcaacgg gaacgtcagc acgaccttgc ttgcggccaa gacaaaggtc      3180
     actccagtca agccgttaac catacccatg acggaactaa gcggagcggt tctagcagtc      3240
     aagcttgtca catggctatc cacagcggtt caattgggcg gagttccggt ggagactttc      3300
     ttttggacgg acgccactat cgtcttgcac tggttggctg gatacgtaca aaggtggaag      3360
     accttttggc caatcgagtc ggattcatcc tggaccattc ggacccaagt caatggcggc      3420
     acgtgggtac cgaagacaac ccagcggact gcgcggccag aggactgaca cctaaggaat      3480
     tgcagaactt taccctgtgg tggagagggc cat                                   3513
//
ID   BEL-750_AA-I repbase;    DNA;    INV; 7008 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-750_;
KW   BEL-750_AA-I; BEL-750_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7008
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7008
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 622-622 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           680..6085
FT                 /product="BEL-750_AA-I_1p"
FT                 /translation="MANELRDLFKQERNSLKTFEVVKCFLDKFDSSVHGAE
FT                 VEIRLERLQAAFSDFHSVRRKIELLTEDVEEESDTDQKMTSEMIEDRIKKK
FT                 EAENEKIILDVENKYCRLKAALMSRLTIQPSVQQQPVMQGSSTGLSRVKFP
FT                 EIRLPTFSGHLKDWVTFRDTFRSLIHNNSQLTEMDKFTYLRSSLSGEALQE
FT                 INSVEMSDVNYVVAWEMLEKRYENKKLIVKAHLDALFSIEPMRREGYELLS
FT                 LLISDFDKHLLMLDKVGEVTDNWSTMLVHMVCTRLDSTTLRNWETHHNSKE
FT                 VPKYKDLMAFLRDHCSVLQSVAPAKTTVVPEKKAKFSISNSVVQPSFKCPF
FT                 CGEGFHSAFRCLKFLKLKVAERSEAVRRSRLCLNCLSPGHQARACTRGECH
FT                 HCKLKHHSLLHPEQQQVSEVSNRFSVPQGQPKPPTINQQQLQTHLPNQNQP
FT                 TQAHTTQQPTRTLSASHSQSSAQPSTSSQSCTNQNTVALPTSIQLSTQDIL
FT                 LSTALVRVRDSYGNTRLARALLDSCSQFCFMTTQFSSKLKLQSSAEHMSVQ
FT                 GIGGSVVEARKSVKATVLPRSPDLSPFHEEITFYVLPELTATLPAQKINVV
FT                 NWKLPNNIAFADPQFHEPGRIDLIIGAEHYLDLLIDGREKIMDGGPTLQNT
FT                 VFGWIVSGRVISHPLPVQHTSAYSCTLANLQEQLTKFWELENCHTQCTQSV
FT                 EETACEAFFDQTTVRNDRGRFVVTLPKRDYIISQLGESNSIAARRFLGLER
FT                 RFQQNQELKTAYAGFIQEYERLGHMVQVSASVSDDNDASPAYYLPHHAVFK
FT                 LDSTTTKLRVVFDASCKTSIGVSLNDALMVGPVIQEDLISIALRFRLFCVA
FT                 IVADIEKMYRMILVQPQDQHLQRILYRDSPDEPLKTYELTTVTYGTASAPY
FT                 LATKCLQRLADDEASDYPHAAKVLREDFYVDDMLTGANNVEEAKLLATEMV
FT                 ELTASAGFNLRKWNSNSQELLAHLPHELLDSRALLELDSSSSPVKTLGLQW
FT                 EPQSDCFRYDSPQQNNDTVLTKRIVLAEAARLFDPLGLIGPVVVIAKIFLQ
FT                 ELWKHNCAWDDHLPEAMQLFWQEYRMNLTALSSLSIPRWIGFKTEAVSVEL
FT                 HGFCDASDKAYGACIYTRCTLMDASVEVRLLIAKSRVAPLEDLKRNKKRLS
FT                 TPRLELSSALLLCHLYEKVKSSIRIPHDASFWTDSTIVVHWLSSLPSRWQI
FT                 FVANRVSEIQHITKGFAWNHVAGAENPADIISRGMNPSQLQYQNVWFEGPA
FT                 WLRRDRSTWPVASPEENFDQSLLEERSAVAIPAQSKTNNELFGLHSSLFVL
FT                 VRRVAWIRRFIHNCRRPDEIRCGNINHIEHQEALLLLVRLSQNESFPEEIS
FT                 ALQRGNQVKQSSPIHQLWPILVDGVLRVGGRLSQAPVSSTRKHPAILCYRH
FT                 PLSKLIVADYHLKLFHAGQQLLTSSVREKYWPTQIRRLANTVIHECVSCFR
FT                 NKPKVLEQLMANLPSERVSPAPPFLKVGVDYCGPFFVANANRRAAPRKYFL
FT                 AVFVCLVTKAVHLELVGDLTSAAFLAAFKRFVARRGRPILVMCDNALNFVG
FT                 ARRELSELHRLFRNQQFQQSVTNGAEEDEIEFRFIPARSPNFGGLWKAAVK
FT                 SFKGHFKRTIGTKILPHDEMQTAIVQVEAILNSRPLTPISSDPMDFEALTP
FT                 GHFLIQRPLTAIPEPDLSHLPQNRLSLWQNAQDFVQQIWKKWSKQYLSDLQ
FT                 NRTKWTRRRNNISVGTMIIVREDNLPPLKWKLGRVVDVHAGTDGNIRVVTV
FT                 KTQDGLFRRAISKICVLPIRDNQLSSTSEEN"
XX
SQ   Sequence 7008 BP; 1935 A; 1660 C; 1624 G; 1789 T; 0 other;
     taatttggtc cttcgaaccg gatttcgggg acatttaaaa cgaatagtga ccagtgttaa        60
     tccgaaacaa tagcagttgt atgaagaaac cctccaccag ccggtggata cggttcagtg       120
     aacctgggct tagatcgttg acctcagtgg tgtggtgata tcgtgttgga tgctgcattg       180
     ttcctgattt ctgctcatcg tggtgaaggc ttaggagata tccacaacgg cgactgcatg       240
     gataggagga tagctgcttg gaaacaaacg gggaagtact agatgtgcat gttgatgatt       300
     gatggtggac tctttgcatg cgagtcactg gtgcgtagtt tatatgattg cggtcaataa       360
     attaatggct agaatagcat ggaagtgttt gaatatcttt ctgcaaattg tgggtgtagg       420
     tgagcctctg tgtctaccat ctctctggtt ggtctttcaa tctgctgctt tcctggtttt       480
     tggtgttctg ctcggttgga tcctctcgct gctgtcgttg gttgttgccc ttccccttgt       540
     cactgtcaac attgcgggtt cgctgggacg tcgagtggaa ttcgcgtttc gggtgcatag       600
     tggaagtgaa ttacagtgag tgatatttcg tgatcaatga actgaataac gttgaactat       660
     cagtgattat cttgtgaaaa tggcaaacga attacgtgac ttatttaaac aagaacgaaa       720
     cagtttaaaa actttcgaag tagtgaaatg ttttctcgat aaatttgact ctagtgtaca       780
     tggtgcagaa gtggagattc gcttggaacg cctgcaggcc gctttcagtg atttccacag       840
     tgttcgaaga aaaattgagc tgcttacgga agatgtagaa gaagaaagtg atactgacca       900
     gaaaatgact agtgagatga ttgaggatcg aatcaagaaa aaggaagcag agaacgagaa       960
     gatcatccta gatgtggaaa acaaatattg ccgtttgaaa gctgctttga tgagtcgttt      1020
     aacgatacaa ccctctgttc agcaacaacc tgtgatgcaa ggaagttcga ctggtttatc      1080
     acgtgtcaaa tttccagaaa tccgtctgcc aacctttagt ggtcatctta aggattgggt      1140
     gacctttcgt gatacctttc ggagtttgat ccataacaat tcacagctaa ccgaaatgga      1200
     taaattcacg tatttgcggt catcgcttag tggagaagct cttcaggaga taaattccgt      1260
     tgaaatgtca gacgttaatt acgtggttgc ctgggagatg ttggagaaac gatatgaaaa      1320
     caagaaattg atagttaaag cccatctcga tgccttgttt tcgatagagc ctatgcggag      1380
     agaaggatac gagttgctta gtcttctaat cagcgacttc gataaacacc ttctcatgct      1440
     agacaaggta ggagaagtta ccgacaactg gagcacaatg cttgttcaca tggtgtgtac      1500
     tcgcttagat tcgacaacgc tccgtaactg ggaaacgcac cataactcaa aggaagtgcc      1560
     caagtataaa gacctcatgg ctttcctgag agatcattgc tccgtgttac agtccgtagc      1620
     tccagctaaa actacagtcg ttcctgagaa gaaggccaag ttctccatta gcaactctgt      1680
     tgttcaaccg tcgttcaaat gtcctttctg cggagaaggc tttcattccg ctttccgctg      1740
     tttgaagttc ctgaaactga aggttgctga gcgcagtgaa gcagtaagaa gaagccgact      1800
     ttgcctgaat tgcttatctc caggacatca ggcgagagca tgcaccagag gagagtgtca      1860
     tcattgcaag ctgaagcatc attccctact gcacccggaa caacaacaag tgagtgaagt      1920
     gagtaacaga ttctccgtcc cacaagggca acctaaacct ccgacaatca atcagcagca      1980
     actacagaca catctgccaa accagaacca accgacacaa gctcacacta cacagcaacc      2040
     cacacgcaca ctttccgcat cacactcgca atccagcgca caaccatcca cctcaagtca      2100
     atcatgcacc aaccaaaaca ccgtagccct tccgacaagc atacagcttt ctacgcaaga      2160
     tattttacta tcaactgctc ttgtacgcgt acgagacagt tacggcaaca ctcgactagc      2220
     acgagctttg ctagattcat gctcacagtt ttgcttcatg acgacacagt tctccagcaa      2280
     actgaagcta cagagctcag ctgaacatat gtcggttcaa ggtatcggtg gttcagtagt      2340
     cgaagcacga aagtcagtga aggctacagt tctccctcga agtccggatt tatcgccatt      2400
     ccacgaggaa ataactttct acgtgctacc tgagttgact gcaactttgc cagcacagaa      2460
     aatcaacgtg gtcaactgga agctcccgaa caacattgcc tttgcagacc cacaattcca      2520
     cgagccaggt cgtatagact tgatcattgg agccgaacat tatctggatc tgctcattga      2580
     cggtcgagaa aaaataatgg acggagggcc tacactgcag aatactgttt ttggctggat      2640
     agtatccggt cgcgtaatta gtcatccgtt gccggtgcaa cacacatcag catattcctg      2700
     tactcttgca aacctgcagg aacagttaac gaagttctgg gaacttgaaa attgccacac      2760
     tcaatgcact cagtctgtgg aggagaccgc ttgtgaagca ttttttgatc aaactacagt      2820
     tcgaaatgat cggggaaggt tcgttgtcac gcttcccaag cgagactaca tcatcagtca      2880
     gctcggagag tcaaatagca tagcagctag aaggtttctt ggattggaga ggagatttca      2940
     gcagaatcaa gaactgaaga cagcgtatgc aggtttcatc caagaatatg aacgacttgg      3000
     tcacatggtg caagtatcag cgtcagtatc agatgacaac gatgcctctc ctgcgtatta      3060
     tcttcctcat cacgccgtgt tcaagttaga cagtactaca accaagctac gcgttgtatt      3120
     tgacgcatca tgtaaaacca gtatcggagt ttccctcaat gatgctctca tggtcggccc      3180
     ggtgatccaa gaggacctaa tttcgattgc tcttcgtttc cgtctgttct gcgtggcgat      3240
     tgttgcagac attgaaaaaa tgtaccggat gatactagta cagccacaag atcagcatct      3300
     acagcgaatt ctttatcggg attctcctga tgaacctttg aagacgtatg aactgacaac      3360
     cgtcacatat ggaacggcgt cggctcctta tctggcaacg aaatgccttc aacggctagc      3420
     agatgatgaa gcttccgatt atccacatgc agctaaggtg ttacgcgagg acttctatgt      3480
     cgacgacatg ttgacaggag cgaacaacgt cgaggaagcg aaactgcttg caacagaaat      3540
     ggtggagctg acagcatctg caggattcaa cctgcgaaaa tggaactcaa actcccaaga      3600
     attgttggcg catttgccac atgaattgtt ggatagtcga gccttgttag agctggattc      3660
     atcatcctct ccagtgaaga ccctaggctt gcagtgggag ccacaatcag actgttttcg      3720
     atacgattct ccacagcaga acaatgacac tgttctcact aaacgtattg ttctcgctga      3780
     agcagctcgg ttgtttgacc ctcttggatt gatcggtccg gtggtcgtca ttgcaaaaat      3840
     atttctccaa gagctgtgga agcacaactg cgcttgggac gaccatttac ccgaagcaat      3900
     gcaactgttc tggcaggaat acaggatgaa tttgacagca ttgtcctctc tttcgattcc      3960
     acgctggata ggtttcaaga ctgaagcagt atcagtggag ttgcatggtt tttgtgacgc      4020
     ttcggataag gcatacggtg catgtattta cactcgttgt accctgatgg atgcttcagt      4080
     ggaggtacgt ctacttattg ccaaatcacg tgttgcgccg ctagaagacc ttaagcgtaa      4140
     caaaaaaaga ctatccactc cgcgtttgga attgtcatca gcattgctac tttgccatct      4200
     gtacgaaaag gtgaaatcca gtattcgtat tcctcatgac gccagcttct ggacagactc      4260
     taccatcgta gtgcattggt tgtcttcttt gccctcgaga tggcagattt tcgttgctaa      4320
     ccgtgtgtcc gagattcaac acatcaccaa aggatttgcc tggaatcacg tagctggagc      4380
     tgaaaacccg gcggacataa tctcacgtgg tatgaaccca tcccaattac aataccaaaa      4440
     tgtttggttt gaaggcccag catggctgcg tcgagaccgc agcacttggc cggtggcaag      4500
     tcccgaagaa aacttcgatc aatcgctact ggaagagcga agtgcggtgg caattccagc      4560
     acaatccaag acgaacaatg agctatttgg cctccattcg tctttattcg tactggtgag      4620
     aagagttgca tggattcgtc gctttattca taactgtcga cgcccagatg agataagatg      4680
     cggcaacatc aatcacattg agcaccaaga agctttactg ttactagtac gactctccca      4740
     aaatgaatcg tttccagaag agatttctgc cctccaacgc ggaaatcaag taaaacagtc      4800
     atctcccatt caccaactct ggccaatact cgtcgacggc gtactgcgtg ttggtggtag      4860
     gctatctcaa gcacctgtat catcaactcg caagcatcct gcgattctct gttaccgtca      4920
     tcctttgagt aaactgatcg tcgcagacta ccatctgaag ttgttccacg caggccagca      4980
     attactaacc agtagcgtaa gggagaaata ttggcccact caaatccgta gactagcgaa      5040
     tacagttatc cacgaatgtg tatcctgctt ccgtaacaag cccaaggtgt tagagcagct      5100
     catggcaaat ctaccgtcgg aacgtgtatc acctgcaccg ccattcctga aggtgggtgt      5160
     ggattactgc ggtccattct tcgttgccaa tgctaatcga cgggcagccc cacggaaata      5220
     cttccttgct gtcttcgttt gtctggtaac aaaagctgtg caccttgagt tggttggaga      5280
     cctgaccagc gcagcttttc ttgcggcatt caagcggttt gtcgcccgtc gcggacggcc      5340
     aatcctagtc atgtgcgaca acgctctcaa ctttgtcggt gcaaggcgcg agcttagcga      5400
     gctccatcga ttgttccgta atcaacaatt ccagcagtca gttacaaacg gcgcagaaga      5460
     agacgaaatt gaatttcgtt tcattccagc aaggtcaccc aactttggtg gcctctggaa      5520
     ggctgcagta aagtctttca aaggacattt caaacgcacc atcggcacca agattcttcc      5580
     acatgacgag atgcaaacgg caatcgtaca agtggaagca atcctaaatt cccgtccgtt      5640
     gacacccatc agcagtgatc caatggattt tgaggctttg actccgggtc atttccttat      5700
     ccaaagacct ctaaccgcta ttccggaacc agacttaagc catcttcccc aaaaccgttt      5760
     gtcactgtgg caaaacgcac aagattttgt gcaacagatc tggaaaaaat ggtccaaaca      5820
     atatttgtcc gatctccaaa accgaacaaa gtggacgcgt cggcgcaaca atatctctgt      5880
     cggtactatg atcattgtaa gggaagataa tctaccaccg ttaaaatgga agttgggacg      5940
     agtagtagat gtccatgcgg gtacggatgg aaacatccgc gtagtgacag taaaaactca      6000
     ggatggtctg ttccgtagag caatctctaa gatttgtgtc cttcccatcc gggacaatca      6060
     actttcatca acttccgaag aaaactaaac ctcagcgctt cggcgtgtac tgttttccat      6120
     cttggatcca cgagccgtcc caaccagtgt ccagtcaatt caaattgaag tccagttgtc      6180
     aagcatgcgt tttgtccgtt caaatgtcct gtccagttca gcatcacttc agtatcgtcc      6240
     tgtgaggtcc ggcacatccg tgtcggcaag ttcaaatgtc ctgttcagtc agttagtcca      6300
     aatgcaaaat actgttgcaa tatcatttgt catcgtagtc gaagaagtcg cttcatgcga      6360
     gcaacaatcc aaggcaggga tcgatggtac catccctctc aacgtagcaa ctcagaacac      6420
     cagtgggttt ggccaactca tatcggtgat ttccacaacg ttgaagtcag tgctgccgca      6480
     caagcacatt tttgcatact acgagtaatc attccatcat cgagagcatc atcatcggcg      6540
     ccgggggcgc tagcggaggc caggaggcct ccgcgccagg caaggcaatt accattgggt      6600
     caggtgaccc cccaagaagc cacggacatc tccagtcaag cagtcatcga tcatcgtaga      6660
     aaacctcgta gaagacgatt cctcctaacg aagttccacc aaacaatacg gtccaagatg      6720
     tacaatgaag tcccaaccaa gatcaccgta agcacggtcc gaggagaatg ttttggcact      6780
     gcttcgatcg gacggattga gcatgtacac ctcgacgttc atcaatcaag tcgcagctac      6840
     caaccgaaga caaccagttt aagggtcaat cgacggaaag aggagagatc ttcagatcca      6900
     gccacgaatt aacagtgctt tgaatattca gtgttagaac gtaagcgggt aatagaagag      6960
     caggtttaat gaagaactat tgaaatgggt atttcaaggc ggccggta                   7008
//
ID   BEL-750_AA-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-750_AA-I;
KW   BEL-750_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-376
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-376
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 575-575 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 376 BP; 127 A; 87 C; 64 G; 98 T; 0 other;
     tgtcgcatca aaactaattg tagccagcag tcacctatgt tccacgccaa accattctca        60
     attctcaata agcctagaat gtgaattctc tccagaactc actctcacat aaaactagtg       120
     tattcagatc gtcaggctaa aattaataaa gctacagtag tacgaaacga tctcgcgcgt       180
     gtagcagagc aatccatcgg agctctatcg gtccgagtcc agaattctag aataacaaat       240
     ttcaccaata acgtagaata ataaattttt gaacgttgtc cgaaaagtag tccgtttaaa       300
     taaatagtgt tgaactttat acgccgcgag tgattccccc tacgaaatcc gagaaatttc       360
     cgctgaaaca gtgaca                                                       376
//
ID   BEL-751_AA-I repbase;    DNA;    INV; 7243 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-751_;
KW   BEL-751_AA-I; BEL-751_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7243
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 623-623 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           673..6081
FT                 /product="BEL-751_AA-I_1p"
FT                 /translation="MPNLLELQMQERQLRNTLEMISAFSKRFKSERDANQV
FT                 EVRLAMLEETLAKFYEVRRNIEILTEVVELDLTAAEKEEKHEEQVAENKET
FT                 VWEFENLYCEVKAALSQHKHNHAASCSSASSSAAPSTSRVKLPDIKLPTFG
FT                 GKLMQWITFRDTFRSLIHCNESLSAIDKFTYLRTSLFGEALQEISSIEMTA
FT                 ANYRIAWTTLKKRYENKKLILKTHLDAIFAVEPVRKECFEALNHVVSTFDK
FT                 NIQMIDKLGIDTKNWSVLMAYILCLKLDATTLRNWETHYNSKEFVEFDSLM
FT                 TYLRDHCAVLQSIAPIKPTHGERHQHKVATSYAVSADATSCCFCDGAQHSV
FT                 FQCQVLRKMNSGERIAAARRNMLCFNCLAPGHVVGKCSRGFCTVCKRKHHT
FT                 LLHEGFAAPNRANSATTSIVPHTAPRSRQANSQQTQPPYSRPQSQNQNRTP
FT                 LTQSTQQNTPTPSASSNATNSQPTTENTATCNSVSLQANIANISREVLLST
FT                 AVVRVHDQFGHILFARALLDSASQRNLITTDFAQRLRCKPFTDYLRIKGVG
FT                 SSETASTNAIIAKISPRSPHLAQFSTSMKFHILSKVTSCLPRKHVNIQHLN
FT                 LPSNNKLADPSFNVPGKIDMIIGAEHFYELLMEERRKLEGSDAVIQNTIFG
FT                 WIVSGVVEISXNALPQVVVNSNLSEAESTSRIQDQLAKFWELESCHVKSTL
FT                 SLEESACEEFFKQTTFRDKTGRFVVSLPKKPNMIGKLGESRSIAVKRFLGL
FT                 ERRLEANPVLKAMYIDFVHEYLLMGHMVKVEQQIEDPPAYYMPHHAVIKPD
FT                 STTTKLRVVFDASCVTSTGVSLNDSLMVGPVVQDELYDINIRFRLHMFVVV
FT                 ADVAKMYRMVKVDPADQQYQMIVWRDSSDEPIQSYKLTTVTYGTASAPYLA
FT                 TKCLQMLGEDGESTHPIGSRVVKKDFYVDDMLSGADSIEEAKQLVAETSEL
FT                 TSSAGFILRKWRSNHEEVLRGLPAHQRDDGGIVELESSSAAIKTLGLLWDS
FT                 NDDCYRFKVPTWNFGSTISKRVVLSDAARIFDPLGLIGPIVVVAKMFLQDL
FT                 WKEQVGWDESLSDVLQNRWMEYRRNLISLESITVPRWVGCNPKCVEVEVHG
FT                 FSDASEKAYGACFYMRSVWDDDTVAVFLLTSKSKVAPLEDLKRKRKKQSIP
FT                 RLELSAALLMSHLYEKIKGNLPSNTKAYFWTDSTIVKCWLSSSPARWQPFV
FT                 ANRVSEIQHLTVGAMWNHVPGIENPADVISRGMVPAQLQYCSLWWNGPVWL
FT                 RQSHSMWPQNEDASTEDDQEAIVEEKAVTACAIQIQPPNEVFFLRSSLNSL
FT                 QRLVALVRRFAHNCRPSNRIERRVGFLTYYEYDEALMNLVRISQTECFPEE
FT                 LKDLGKGNQVKQSSRIHTLNPKLVHGIIHVGGRLRNAAVAPMRKHPIILDH
FT                 RHPLTKLVLQHYHQKYLHAGQQLLVSTVRERFWPLNIRRAARQVLHQCVPC
FT                 FRSKPKVHDQIMADLPRERVTPAPAFLKVGVDYCGPFSMSYPGRKARPIKC
FT                 FVVVFVCLVTKAIHLEMALDLTTQAFVAALRRFVARRSKPQLIMCDNAKNF
FT                 VGAKREVDELAKLFQSQQFQEAVVRDSCNDSIEFRFIPARSPNFGGLWEAA
FT                 VKSFKYHLKRTIGLRIITHDEFVTVLVQIEACLNSRPLTPLSSDPNDLDVL
FT                 TPGHFLVQRPLTNLAEPSYQDIPENRLSMWQRXQEFVRRIWDKWSTQYLST
FT                 LHSRTKWTRQRDNLAVGTMVLLRDENLPPLKWQLGRVTEVRFGSDGNVRVA
FT                 VVRTKDGVYERGISKICILPIRDNLPITQEEE"
XX
SQ   Sequence 7243 BP; 2040 A; 1622 C; 1740 G; 1795 T; 46 other;
     tttttggtcc ttcgagccgg atacgaccgg cggacctggt gtttcggkag gaacttktgc        60
     ttagaacagc tgtcgacwga agkgactctc tgcsaagtga wgmgaagcgg tcttcaaggg       120
     tcagtgaact ataagctgtg gtcagcgacc cgtgcaatac cgagatatcg acaagmaaag       180
     tgcacaakaa gaagagttgc caagcggasa agtgacttgg tgtttgatcc tgggagacac       240
     gttggcctgt gaagcgwtcc tgctaacccc atctccaatg aacctgtgag tggagcaccg       300
     gctgatggca ccccctccct ggctgtggag cgaaagaacg aatcttcaac aaaggaaagt       360
     gtgwgcatgc taatctgtgg tgtggcgtca ttgcatgagt cgtccgccat cgacaaattg       420
     attattgttg ttcgataagt tgctgaataa aattgatttc aatatgagct gcatgtcgaa       480
     tatggtttga aggtggtgtt ggaattgatt atgagcttta gtccctggtc cctacggttg       540
     attagaacgt ccgctttgtt ggcaatttat ggtcggtctt gttcgctatt tcactgaatc       600
     ctgtcaaaag atcgcgtgtg tggaacggta ggctgtcaat agtggtacaa gtgattgttt       660
     ctagtggaca aaatgcctaa tttattagag cttcaaatgc aggagcgaca acttcgaaat       720
     acgttggaga tgatcagcgc ctttagcaag cgtttcaaat cggagcgcga tgcaaatcaa       780
     gtcgaggtaa ggcttgcgat gttggaggaa acactagcca agttttatga agtacgacga       840
     aacatcgaaa ttttaactga agtcgttgaa ctggatctga cggcagctga gaaggaggaa       900
     aaacacgaag aacaagtagc cgaaaacaag gaaacagtgt gggagttcga gaacctgtat       960
     tgcgaggtga aggcagctct ctcgcagcat aaacacaacc acgctgcatc atgttcttct      1020
     gcatcatcat cagctgcacc tagcacatcg agagtcaaac tacccgatat caagcttccc      1080
     acctttggcg gaaagttaat gcagtggatc acgttcaggg acacgtttag atcgctgata      1140
     cattgtaatg aatcgctwtc ggccattgat aagttcacgt acttgagaac gtcgctgttc      1200
     ggagaggctt tgcaagagat aagttcgatt gagatgacgg ctgcaaacta tcgaattgct      1260
     tggaccacct tgaagaagcg ttacgagaac aagaaactta ttctcaaaac gcatctcgac      1320
     gctatttttg cggtcgagcc agtgcgaaag gaatgtttcg aagctctaaa ccacgtcgta      1380
     agtacctttg acaaaaatat tcagatgatc gacaagctgg ggatagacac gaagaattgg      1440
     tcagttttga tggcgtacat cctgtgcttg aaactggacg caaccaccct ccgcaattgg      1500
     gaaacacact ataattccaa ggagttcgtg gagtttgaca gtcttatgac wtatttgcga      1560
     gatcactgtg cagttctgca atcgattgca cccattaaac caacccacgg agaacgccat      1620
     caacacaaag tggcgacaag ttatgcggta tctgctgacg cgacctcctg ctgcttctgc      1680
     gatggtgctc agcacagtgt gttccaatgt caagtgctaa ggaaaatgaa cagtggagaa      1740
     cggattgctg cagcccggag aaatatgtta tgcttcaact gcttagctcc aggacatgtc      1800
     gtcggaaagt gctctcgagg gttttgtacg gtatgtaagc gtaaacatca tacattgtta      1860
     catgaaggtt ttgcagctcc gaatcgtgcc aacagtgcta ctacatcaat tgttccacac      1920
     accgccccgc gatcacgaca agcgaacagc caacaaacac aaccaccata ttcaaggcca      1980
     caaagtcaga atcaaaaccg tacaccgctc actcaatcca cacaacaaaa cacacctaca      2040
     ccttctgcaa gctctaacgc aacaaattct cagcccacca cagaaaacac tgccacatgc      2100
     aattccgtct ctctccaagc aaatattgca aacatttctc gagaagtact gctatcaacc      2160
     gctgttgttc gtgttcatga tcagtttggt cacatcctgt ttgctcgagc attgctggac      2220
     agcgcatcac aacgtaattt gattaccact gacttcgccc agagattgag gtgtaaaccg      2280
     ttcaccgatt atttgagaat taaaggagtt gggtcctcgg agacagcttc caccaatgca      2340
     attattgcta aaattagccc tcgttcgccc caccttgctc aattctctac ctcgatgaag      2400
     tttcacatcc tttcgaaagt tacatcctgt ttaccacgca agcatgtgaa catacaacac      2460
     ctgaatttgc cgtccaacaa caagttagcg gatcctagtt tcaatgtacc tggaaaaatt      2520
     gacatgatca ttggggcgga acatttttat gaactgttga tggaggaacg tcgaaagctg      2580
     gaaggcagtg atgctgtcat tcagaacacc atttttggat ggatcgtgtc cggagtcgtc      2640
     gagatcagck ctaatgcttt gccacaagta gtcgttaaca gcaatctatc cgaagcagag      2700
     tcaaccagcc gcatacaaga tcaactagct aagttctggg agttagaatc atgtcatgtt      2760
     aagagtacac tatctctcga ggaatctgcc tgtgaagaat tcttcaaaca aaccacattt      2820
     cgtgataaaa ctggaaggtt tgttgtcagc ctgcctaaaa aacccaatat gattgggaaa      2880
     ttgggcgaat cacggtcgat tgctgtaaag cgattcttag gattggagcg gagattagaa      2940
     gcgaatccag ttttgaaagc catgtacatt gacttcgtgc acgagtattt attgatggga      3000
     cacatggtca aggtagaaca acagatcgag gatccaccag catattatat gccacaccat      3060
     gccgtcatca aacctgatag cacgacgacc aagcttcgcg tggtattcga cgcgtcctgc      3120
     gtcacatcaa caggagtgtc attgaacgac tccttaatgg ttggacctgt ggtccaggat      3180
     gagctgtacg acatcaacat tcgatttcgg ctgcacatgt ttgtcgtagt tgctgacgtg      3240
     gctaaaatgt atcggatggt gaaagtggac ccagctgacc agcaatatca gatgattgtc      3300
     tggagagatt cttccgatga gccgattcag tcatataagt taaccacagt cacttatggg      3360
     acagcttcag ccccgtattt ggcaactaag tgccttcaga tgctcggcga agacggagaa      3420
     tcaactcatc caatcggatc cagagtcgta aagaaggatt tttatgtgga cgacatgttg      3480
     tccggcgcag attcgataga agaagcgaag cagttagtag cagaaacgag tgagctgacg      3540
     agttcggctg gattcatttt gagaaaatgg agaagtaatc atgaagaagt gttgcgtgga      3600
     ttaccggccc atcagcgcga tgacggagga atagtggagc tggagtcatc tagcgcagcc      3660
     atcaaaactc ttgggctact atgggattcg aacgacgatt gctacaggtt taaagtgcca      3720
     acatggaatt ttggttctac aatttccaag cgagtagttc tttccgatgc tgctcggatt      3780
     ttcgatccac tagggttgat tgggccaata gtggtagtgg caaaaatgtt tttgcaagat      3840
     ctgtggaagg agcaagttgg atgggacgaa tctttgagcg atgtattgca aaaccgctgg      3900
     atggagtatc ggagaaatct gataagcctc gagtctatta cagttcctcg ctgggtcgga      3960
     tgtaatccga aatgcgttga agtggaagta cacgggtttt ccgatgcctc cgaaaaggct      4020
     tacggagcat gcttttacat gcgaagcgtc tgggatgatg acaccgtcgc cgtatttctc      4080
     ctcacatcaa agtcgaaggt ggctccgctc gaagacttga agaggaaaag aaagaagcag      4140
     tccattcctc gactggagct ttctgctgcg ttgctcatga gtcacttgta cgaaaagata      4200
     aagggtaatc ttccatcgaa cacgaaagcc tatttttgga ccgattcaac gatagtgaaa      4260
     tgctggcttt cttcatctcc agctcgatgg cagccgtttg tagcaaatcg tgtgtctgaa      4320
     atacagcatc tgacagtagg agccatgtgg aaccatgttc ccggaataga aaatcccgca      4380
     gatgtcatat ctcgtggaat ggtcccagca caacttcaat attgctcact ttggtggaat      4440
     ggcccagttt ggctgagaca aagtcattca atgtggcctc aaaatgaaga cgcttcaacg      4500
     gaagacgatc aagaagctat agttgaagag aaagctgtga ctgcctgtgc tatccaaatt      4560
     cagcctccga atgaagtttt cttcttgcga tcgtcgttga actcactaca acgacttgtt      4620
     gctttggtgc gacgcttcgc gcacaactgc aggccatcaa acagaattga gcgtagagtt      4680
     gggtttctca cgtactatga gtatgatgaa gcattgatga acttggtgag aatatctcaa      4740
     actgaatgtt ttccggagga gctgaaagat ttggggaaag gaaatcaagt caagcaatcg      4800
     tctcgaatac acaccctgaa tccgaagtta gttcatggaa taatacatgt tggcggccgg      4860
     cttcgaaatg ctgcggtagc gccaatgaga aagcatccaa tcatcttgga ccatcgacat      4920
     ccactcacga agttggtttt gcaacattat catcaaaaat acttacatgc tggccaacaa      4980
     cttcttgtgt ccacagtacg cgagagattt tggccactga acatccgaag agcagcacgc      5040
     caggtgcttc atcagtgcgt tccttgtttc cggagtaagc cgaaagttca cgatcaaata      5100
     atggcagacc ttcctcgaga aagagttacc ccggctccag ctttcttaaa agtaggcgtc      5160
     gattattgcg gaccattttc gatgtcgtac cctggacgaa aggcccgtcc gataaaatgt      5220
     ttcgtggttg tttttgtctg tctggttacg aaagcgatac atttggagat ggctttggat      5280
     ctgactacgc aagcgtttgt cgcagcttta cggagattcg tagcacgaag atcaaaacct      5340
     caattgatta tgtgcgacaa tgcgaaaaat tttgtaggag cgaagcgaga agttgacgag      5400
     ttagcgaagt tgttccaaag tcaacaattc caggaagcag tagtcaggga ctcttgtaac      5460
     gacagcatag aattcagatt cattcctgcc agatctccca attttggagg gctctgggaa      5520
     gcagctgtta aatcgtttaa atatcatctc aagcggacga tcggactccg aatcattact      5580
     cacgatgaat tcgtgacggt gctggttcaa atagaagcat gcttgaattc tcgtccgtta      5640
     acaccgctca gcagtgaccc taatgatctg gatgtcctga ctccggggca ctttttggta      5700
     caacgaccat taacgaacct agcagaacca agctatcagg acattccaga gaatcggtta      5760
     tcaatgtggc aacggamcca agagtttgtg cgacggattt gggataaatg gtcgactcag      5820
     tacctttcka ccttgcatag tcgcactaag tggacacgcc agcgcgacaa ccttgccgtc      5880
     ggaacgatgg tactgctacg ggatgaaaat cttccaccat tgaaatggca gctgggcaga      5940
     gttaccgaag tgcgcttcgg tagtgatggt aacgttcggg ttgccgtcgt acgcactaag      6000
     gatggcgtct acgagagagg aatctctaaa atttgcatcc tcccaattcg agataattta      6060
     cccattacgc aagaggagga ataaactccc ctccaccgag gtgcctcagg cacctgcggg      6120
     gatctgtgga tccccgcgaa ccagttaagt gtttgtattt tattgtatga gcaaaaagta      6180
     atgcgatttc ttttttgcca gctttgatgc ccctttccta ttctggctcc aagcccacca      6240
     acgctgaagt ctgcctctat gttaaggtcc gtattgcatg ccacaagaaa tgttcgtcgc      6300
     acgtaccatg gattaaccac acgttatgtg ttctaacaca tcggtctaga acagcatgtc      6360
     gctactagac tcggcatcac ggatgccgtg gagactggag gtttccacag tttgataaga      6420
     aagtaattct ctctaaattt gcatcgccag gtcaaaggtt cctgctctga tgagcagata      6480
     tttgcgttta aaatcaatcc taccgaagac tgcagtaatt cggttccaag atgcaccacc      6540
     catcggtcag cagacagttt ggccaactgt tttgacgacc tgtgaggagc atcaatgaag      6600
     aagaagaagc ccaataccat cacgaagagg agcagttcca cgagaaaatc atcatttgca      6660
     acaccatcgt ccaaatgtcc gamgtcgagc tcwcaacgac gggacagcat aamcggtgct      6720
     gggagcaccc gcggaggcca cggaggcctc cgctccaggg aagtcttgtc gckttacata      6780
     aattcatctt agaaagcacc ctctcatmtc ttacagagca tgaagtccgc aagcaggagg      6840
     agcawcaacg tcggtkgtac ggagctgagt atccaaccag cactsaagtc gtccatatca      6900
     agccmkcacs akagmmcatc tatassakcc gcatcgaacw tgagcagcag magcataatc      6960
     cagwaggcaa gcatcmgaaa agmaaacacc gtcgtagcca gwattatcaa caaacccttg      7020
     ggcagtccgt ccakkggamt gaggtcaaca cccgkagaag tmaacagcgc agcaaaaaca      7080
     gtgaaatcga aagtgwtgtg tttacaaaca actcaattgt ccaaaatcac cattactagt      7140
     gtactacgaa tagctcagag tatttgttgt agagagtaca agtgagagtt ggaacatcaa      7200
     gttagtctta gcagtattga aagttctttc aaggcggccg gga                        7243
//
ID   BEL-751_AA-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-751_AA-I;
KW   BEL-751_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-314
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-314
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 576-576 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 314 BP; 89 A; 67 C; 62 G; 96 T; 0 other;
     tgtttataaa cgtagcttta gatataggga atcgagaaaa aggccggtgc taacggtcaa        60
     tcgcctacct ctgataatac cactaagcga tatcgttgct cacgtattga atagctactt       120
     ttacatatta atttagttcc caataaaccc tgattcgaga cggtcgtgtt tgccatacac       180
     ctcgattctt tttctcgcgt aataaacgta gtgcatgtat caccgcagaa tttgagctaa       240
     gtgttaaagt gcaattctac ccgaaactgc cagttttgtt aaagtgaacg attagtccgc       300
     cgcgttgtga tcca                                                         314
//
ID   BEL-752_AA-I repbase;    DNA;    INV; 6772 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-752_;
KW   BEL-752_AA-I; BEL-752_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6772
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6772
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 624-624 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1378..6687
FT                 /product="BEL-752_AA-I_1p"
FT                 /translation="MPTKKLCTVESTMKLLTTKLNEIELAFNDIWRFTEKI
FT                 QETTTVTQILLRLEKIDELWEKHGATLVELKSQDDFYDEDDQVEQKRQDFS
FT                 DRYYLAKSILTDKARERQEHTSLNQTIRGNDQPSTTSVDHVRLPQIKLQTF
FT                 SGEIDEWLSFRDLFTSLIHWKTDLPDVEKLHYLKGCLQGEPRTLIDSLPIT
FT                 TANYQVAWDLLLKRYNNSKQLKKRQVQSLIKLPTLSKESANELHSLVEGFE
FT                 KIVHTLDQIVQPVDYKDLLLVNFLTSRLDPSTRRGWEEFSSTKEQDTVKEL
FT                 LEFLQRRVRILESLPNRAAEVPKQSQPQLPPRKKQPTRTSYNMAQVSGVRC
FT                 VACAGNHQLFQCSTFMQMAVANRDSLLKSNSLCRNCFRQGHLARDCRSRYS
FT                 CRHCKGRHHTLVCFKSEGNQNINLSTKVSTVPKESSEASSSSSAQPATISV
FT                 PPQVANMAATNNGSLWAGATQQGSSKVLLATAVIVVQDDDGNRIPARALLD
FT                 SGSECNFISERLSQRLKVTRRRVDISVLGIGQAATKVKQRISTEIRSRVSD
FT                 FSRRMSFLVLPRVTVNIPTTSLNSISWTLPEGIELADPSFWVSSGVDLVLG
FT                 IEAFFDFFASGRKIALGVDLPSLQDSVFGWVVTGGFVDNDHSLQIKCNVAT
FT                 MDQLEDALSRFWAIEDIESANNYSPVENRCEAAFASTVQRGTDGRYTVSLP
FT                 RDENVIFRLGESMEIAFRRFLSTERRLSNDAHLREQYVAFMEEYEQLGHMR
FT                 KVERDQEKDKRCYLPHHPVVKEASTTTKVRVVFDASCKTSSGVSLNDGLLA
FT                 GPVIQRDLRSIILRCCTKQILLVSDVEKMFRQIFVRSADRPLQSILWRTSP
FT                 TEEIGVYELNTITYGTKPAPFLATRTLNQLAMDEGERYPLAVQAITEETYM
FT                 DDVITGCDSVEEAKELQIQLNGIMSSGGFQLRKWASNCAEALHGIPECNLA
FT                 LRPSEGIRMDPDSSVKTLGLIWLPNTDVFRFQFEFSYGTQEVFTKRQVLSV
FT                 IATLFDPLGFIGATITAAKLFMQLLWTCEDENGKRLDWDQSLPSTVGESWR
FT                 NFHMQLPALNDIRVDRCVILPQAIQVEIHCFSDASQKAYGGCLYIRSQDKY
FT                 GNVKVQLLYSKSKVAPLKTQSIPRLELCGALIAAQIYEKVRSATNLPVRTT
FT                 FWVDSTCALQWIQASPSNWTVFVANRVAKIQAITDGCEWRHVSGADNPADM
FT                 ISRGIGPKEILHNNFWWHGPSWLAQDRSHWPDSSNCTSEDYGEEERRCTVA
FT                 TCTTSAIEEFNEWFVSKSSTYTVLIRRTAIWLRIMQLLRTPREKRWTGFLT
FT                 LGELRQAEFTIIKRVQREAFPDELEAVKNNESVAKKSPLRWYSPFLCKDGI
FT                 LRVGGRLNHSMESSDMKHPMILPARHRCTRMIFEQYHLRLLHAGPQLLLGT
FT                 IRQRYWPLGGRNVARQVVQQCLKCFRSRPKLIQQFMGELPASRVTISRPFS
FT                 KTGVDFFGPVFIRPGPRRTAVKAYGAIFVCMCTKAVHIEVVSDLSTDRFMQ
FT                 ALRRFIARRGRCTDLYSDNGTNFVGARNQLQELFSLLKDGDHRQQVADFCS
FT                 AEGINWHFNPPSAPHFGGLWEAAVRSAKHHILRVIGINPVSLEDMQTLLVQ
FT                 IEGCLNSRPLTQMSDDPEDLQPLTPAHFLVGSSLQSFPEEDLLSIPTNRLK
FT                 HWQVVQQQLQHFWNRWRKEYLCQLQGRAKRWSPPVEVQTGKLVIIHDNNLP
FT                 PMRWRMGRIIQVHPGSDGVVRVVTIKTASGELKRPVEKISLLPVPDEKED"
XX
SQ   Sequence 6772 BP; 1863 A; 1493 C; 1596 G; 1820 T; 0 other;
     ttttggtcct tcgagccgga tgcctgagga ccgtgccaag ctcgactgac tgacctaagg        60
     accgactggc gctttttgtg tccgtaatca gcctaccacg ctacttacaa caaacgaaca       120
     aatttggccg ccaccgatgc aaaggccacc gccatagtta gacgagacaa tcagcgagct       180
     actattgtaa tcagccattg tgaatatcgt cttaaaggat ttattgtgga catttcgcgc       240
     gaatttggat gtcgccattt ggaattctgg tttatgtttc gactgcgttg gacaccgttt       300
     gggactggac actgaatgca gaatggaatc ctgtacctcc aggtaaataa acatttagtg       360
     tatgtcctac cgaagcataa attacgagat tctaacacct ctcttcgacc tttgaacatc       420
     ttaaccgttt ggaactaatg agaacctttg gccgaccgtg gaagatgtta tgagacgcta       480
     taccaaggaa ggattgctta cattccgctt acgcacaatt tggacttcga ttgatacttt       540
     gctagccaga accctggttg tgagcgtgat tgaatcgttt gctgctggac atcataacta       600
     ccattaccga tggatgcttt accgactgtg accatttgat tgacgagttc gtttcaagga       660
     agatccgcga cgaagaggga gcaccacaat ctttccgtcc aggttagtga acatagaact       720
     ctgtatatgt ctgccgaagc atgggcacag ataatataca tcctaaatga aatatatcct       780
     cttcgattat ttgcggacgc attccctata tcgctgctga ggcgattgtc attgaacgtt       840
     ggaaatttcg aattcgccgg gtttgaaccg ctgcttgttt ctcatggtga gttgagcagt       900
     atatgcccgg ccgaagccga aatcgtttga tattacattt ggttcccctc ctcttccctc       960
     acttctcgtt ggtttactgc tggagtttcg atgtcgctgg cgccacaatt ggagttgata      1020
     cttgtgttga taaactgcgc attagttgat tggattattg cagcatcgtt ggtttgccag      1080
     gtgagctgcc acggtatatg tctagccgaa gctagacatc caatccatac tacatactag      1140
     tttcgtttcc tcctcaacaa tttctgtaac gccactgaga attcatctac ccacgtgaag      1200
     tgactgacgg ttggatttaa attgttgctg ttcaccttta aatcatccta gccgaactgt      1260
     tcggtgcgaa ggtcagttta tgaagcacag tgtgtgtccg ccgaagcgag gcacccttca      1320
     gaatactaca gcgatatttc ttattcaatt gcacgtcatc cgttacgagt tgccatcatg      1380
     cccaccaaga agctgtgtac tgtggaatca accatgaagc tccttaccac caagttgaac      1440
     gagattgagt tggctttcaa cgatatctgg cgttttactg agaagattca ggaaacaact      1500
     accgttaccc aaatccttct acgtttggaa aaaatcgatg agctgtggga gaaacatgga      1560
     gcaacactcg ttgagctcaa atcacaagac gatttctacg atgaagatga tcaagttgag      1620
     cagaaaaggc aggattttag tgatagatat tatttagcta aatctatatt gactgataag      1680
     gctagggaga ggcaggagca tacttcgttg aaccaaacca ttcgagggaa cgatcaacct      1740
     tcgacaacct cagtcgatca tgtccgtctt ccacagataa aacttcaaac attcagtggc      1800
     gagatcgatg aatggttgag tttcagagat ttgttcactt ctctcattca ctggaagact      1860
     gatcttccag atgtggaaaa actgcattac ctcaagggtt gcttacaagg tgaaccaaga      1920
     actctcattg attcattgcc gattaccact gctaattatc aagtggcatg ggatttgcta      1980
     ttgaaaagat ataataatag caagcagttg aaaaaacgcc aagtacaatc actaatcaaa      2040
     cttccgactc tatcaaagga gtcagctaac gagctgcact ctttggttga gggtttcgaa      2100
     aaaattgtgc ataccttgga tcaaatagtc cagccggttg attataagga tctccttttg      2160
     gtcaattttc tgacgtctcg ccttgatcca tctacacgac gaggttggga agagttctct      2220
     tccaccaagg aacaagatac tgtcaaggaa ctcctagaat ttctccaaag acgagttcgc      2280
     atcctggaat ccttaccgaa tagagcagca gaggtaccca aacaatctca acctcaactc      2340
     cctccaagga agaagcaacc aacaagaaca agttacaaca tggctcaggt atcaggtgta      2400
     cgatgtgtag cttgcgcggg aaaccatcaa ctattccaat gtagcacatt tatgcaaatg      2460
     gcggtagcga acagggattc gttactgaag tcgaattctt tgtgtaggaa ctgttttcga      2520
     caaggacatc tagcaaggga ttgtcggtca aggtattcat gtcggcattg caagggtcga      2580
     caccacacgc tcgtctgttt taaatcggaa ggaaatcaga atattaattt gtctaccaag      2640
     gtcagcacag ttcccaagga atcttcggaa gcttcatcct cttcctctgc acaaccagct      2700
     actatttctg tacctccaca agtagcaaac atggcagcta cgaacaacgg tagtttgtgg      2760
     gcgggcgcga cccagcaagg gtcttctaag gttttgctag ctacagcagt tatcgtcgtt      2820
     caggatgacg atggcaaccg cattccagct cgtgcactct tggattctgg ttcagaatgc      2880
     aatttcatat cggagcgact cagtcaacga ttgaaggtca cacgtcgcag ggtggatatt      2940
     tcggtcctag gtattggtca ggcagccacc aaggtgaaac aaaggatatc aactgaaatt      3000
     cgttctcgcg tttcggattt ctcacgaaga atgagctttc tagtgttacc gagagtcact      3060
     gtaaatattc caaccactag tttgaactcc atcagttgga cactgccaga aggaatcgag      3120
     cttgctgatc catcgttctg ggtttcttcg ggagtagacc ttgtcctcgg aattgaagcg      3180
     ttcttcgatt tcttcgcttc aggtcgaaag atagccttag gtgtggacct tccctcactt      3240
     caagattcag tttttggatg ggtagtcact ggaggtttcg ttgataatga ccatagcctg      3300
     caaatcaaat gtaatgtggc aaccatggat caattggagg acgcactttc acggttttgg      3360
     gcaatcgagg acatagaatc ggctaacaat tattcaccag tagagaaccg ctgtgaagca      3420
     gcgtttgcga gtacagtgca gcgtggaacg gatggtcgtt atactgtttc tctaccaagg      3480
     gacgagaacg tcatatttcg gttgggcgaa tcaatggaga tcgcattccg acgttttttg      3540
     agtaccgagc gtcgtttgtc taatgacgca cacctacggg aacagtacgt tgcatttatg      3600
     gaggagtacg agcagttagg tcacatgcga aaggtcgaac gcgatcagga gaaggacaaa      3660
     cgctgttatc tcccacatca tccggtggta aaggaggcta gcaccaccac caaggtacgc      3720
     gtagtgttcg acgcatcatg caaaacgtcc agtggtgttt cgttgaacga cgggttgctg      3780
     gcgggaccgg taatccaaag ggacctacgc tctatcatac ttcgttgctg tacaaaacag      3840
     atattgctag ttagtgacgt ggaaaaaatg ttccgccaga tctttgtacg ttctgcagat      3900
     cgaccgcttc aatcaatttt gtggcgcaca tcaccgacag aggaaatagg tgtatatgaa      3960
     ctcaatacca ttacgtatgg cacaaaacca gctccgttcc ttgctactcg cacactcaac      4020
     caattggcga tggatgaagg agagcgatac ccgttggcag tccaggcaat cacagaagaa      4080
     acgtatatgg atgacgtaat cacgggttgt gatagcgtcg aggaggctaa ggaactgcag      4140
     attcagttaa acggaataat gagtagcggt ggtttccagc tcagaaaatg ggcatctaac      4200
     tgtgcagagg ctctgcatgg tatacccgaa tgtaatcttg ctcttcgtcc ttcagaaggc      4260
     ataaggatgg acccggattc ttctgtgaaa acgttaggat tgatttggtt gccgaacact      4320
     gatgtttttc gcttccagtt cgaattttca tatggtactc aagaggtttt caccaaacgg      4380
     caggttctct ccgtcatcgc tacactgttt gatcccctgg gatttatcgg tgccactatt      4440
     acagctgcga agctcttcat gcagctttta tggacgtgtg aggatgaaaa tggtaaacgg      4500
     ttagattggg atcagtcatt gccttcaacg gtgggtgagt cttggcggaa tttccacatg      4560
     cagttaccag cactcaatga tatcagggtc gatcgttgtg taattcttcc acaagctata      4620
     caagtagaga tccattgctt ttcggatgca tcacagaagg catacggtgg atgcctttac      4680
     attcgaagcc aggacaagta tggaaacgtt aaggtgcagc ttctatactc aaaatcgaag      4740
     gttgccccat tgaaaactca atcaattcct cggttggagc tatgtggagc gttgatagct      4800
     gcacaaatat atgaaaaggt taggagcgct accaatctcc cggtgcgcac aacgttttgg      4860
     gtggactcta catgtgcgct tcaatggatt caggcatctc cgtctaattg gacggttttc      4920
     gttgcaaata gagttgcgaa aatccaagca atcacggatg gttgcgaatg gaggcacgtg      4980
     tcgggagcag ataatcctgc agacatgatt tcaagaggaa ttggaccgaa ggaaatactg      5040
     cacaacaact tctggtggca tggcccaagc tggctagctc aggataggag tcattggcca      5100
     gattcgtcga attgtacgtc tgaagattat ggcgaagaag aaagaaggtg tacagtagcg      5160
     acttgtacaa catctgcaat tgaggaattc aacgaatggt ttgtttctaa atccagcacc      5220
     tataccgtgc tgatacgccg cacagcgata tggctacgta ttatgcaact acttcgaaca      5280
     ccaagggaaa aacgttggac tggatttctc actttaggag agttacgtca agcagaattc      5340
     accattatca aaagagtgca aagggaggcc tttccggacg aattagaggc cgtcaagaac      5400
     aatgaatcgg ttgctaaaaa atctccattg cgttggtaca gtccattcct ttgcaaggac      5460
     ggaatattga gagtaggtgg acgtttgaac cactcgatgg aatcttccga tatgaaacat      5520
     ccaatgattt tgcctgcacg tcaccgttgt actagaatga tattcgagca ataccatctt      5580
     cgtctgttac atgctggtcc acagttatta cttggaacaa ttcgccaacg atactggcca      5640
     ctaggtggga gaaacgttgc cagacaggtc gttcaacagt gtttgaagtg cttcagatca      5700
     aggcccaaat tgatacaaca gttcatggga gaactgccag cttcaagggt cacaatctca      5760
     cgtccatttt ccaaaactgg agttgatttc tttggcccag tgttcattcg tccaggtcca      5820
     cgtcgcactg ccgtaaaggc atatggagcc atttttgtat gtatgtgtac taaggctgtg      5880
     cacattgaag tcgtctccga tttgtccaca gacagattca tgcaggctct tcggcgattt      5940
     atcgcacgtc gaggaaggtg cactgatttg tactcagaca atggtacgaa ttttgttggt      6000
     gcaagaaatc aactacaaga gctttttagc ttattgaagg atggagatca tcgacaacag      6060
     gtagcagatt tttgttcagc agaagggata aattggcact tcaatccacc aagtgcccct      6120
     catttcggag gtttgtggga ggctgcagtg cgatccgcca aacatcatat cctacgggtc      6180
     attggcatca atccagtttc tttagaagac atgcaaacgt tattggtcca aatagaagga      6240
     tgtctgaact caagaccttt gactcaaatg tctgacgatc ctgaggatct acagcctcta      6300
     acgccagcgc attttttagt aggatcttcc ttgcagtcat tccctgaaga agatctactt      6360
     tccataccca caaatcgtct gaaacactgg caagttgtcc aacagcagtt acagcatttt      6420
     tggaacagat ggaggaagga atacctttgt caactgcaag gcagagcaaa acgctggagc      6480
     ccaccagtcg aagttcaaac tggtaaacta gtcatcattc atgataataa tctaccacca      6540
     atgcgttggc gtatggggcg gataatccag gtgcatccgg gcagcgatgg cgtagtccga      6600
     gtcgtcacca ttaaaacagc gtctggtgaa ctgaaacgac ctgttgagaa gatatccttg      6660
     ttgcctgttc cagatgaaaa agaagattaa cttaaaccct tcccttgtcc catcctagtc      6720
     gaagaggaat ttcttttaat ttcagaaacg gatatttctg ggtgggtgag aa              6772
//
ID   BEL-752_AA-LTR repbase;    DNA;    INV; 593 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-752_AA-I;
KW   BEL-752_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-593
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-593
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 577-577 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 593 BP; 157 A; 120 C; 161 G; 155 T; 0 other;
     tgtgtgaggg ccaccctagc cccaagctgc atttataccg ttggacgaag ataaacagat        60
     gaggtgcaac gcaatcattg aactgttgat ctgttggtca gctaggatgt tgtggtcatg       120
     gctattgtat tgcgacaagg ctgagcagac ggcagaccga cacgattcgc agcgtagact       180
     acgtgggatc tctcatttca catcgtcgat gggagatgga aacaaattga gcgaattcgc       240
     ccgaaccgaa cgagggttca atctctccac aactgttcgg gatgctggac tctagttata       300
     aggtagattg tacggagaag gtcagtttag taccattagc aaggtcgaag acggtcgaga       360
     gcaatcgggc ttttttaatc tgttagtttt taagattacc gtgttagatt cataagcaat       420
     aaatgtagtg ttcgaagtta gtgtttccct caaaaaatgg acttttgtgt tgccaaagga       480
     agacccgcat gaattgtcgc cagttgtaga accgtcggtt ggaacaccgt cggttggtgt       540
     accgaagcgc cttggagcag gagcgaagta cccatcggtt caggtatcct aca              593
//
ID   BEL-753_AA-I repbase;    DNA;    INV; 6028 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-753_;
KW   BEL-753_AA-I; BEL-753_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6028
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6028
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 625-625 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..6026
FT                 /product="BEL-753_AA-I_1p"
FT                 /translation="MSSKANSKHSKAGSNNGVSTAVTASSPTIVPLADAAI
FT                 GITTEVNVDKQISYAHRTGTIPKHVANKPGSIVSVLRRNPPRDARPVRQSS
FT                 CQLCDGLDNLEMVQCDACKEWFHCQCVNITKDIENNSWSCTKCVVLLRQAS
FT                 ADPPRKDQSSQRSRSSGKSAQSEARRRLKLQLQKIEEEKKLAQQFLEKKYE
FT                 ALLEYGSESSTAVSDSESIFDQASKIEQWMADTDRLGVEADSGLAVEEVDV
FT                 HVANNARRPTEQSARNLGQDVDQPEYHQSQQPLPPTGPNFQFVNPPLITSR
FT                 QAQPQPPYTRRDTLVQANQFVPELRSTPMQRDHLEPMSQPVQSIGDETVCV
FT                 LNRSQLAARQAVPKELPEFSGNPEDWPLFFSVFNSSTQMCGFSNEENMLRL
FT                 RKCLKGKALEAVRCRLLHPSNVAGVMSTLRMLYGRPEAIVQAIVKKVRALP
FT                 SPNIDRLETVVNFALTVENLVATIQACGVNDFVYNASLRYELVERLPSSLK
FT                 LDWAKYSRNTPNPNLVDFSTWMYSTAEDASSVMASASGDTKPRFNKKDGFL
FT                 NVHAEYESGNGKLQVVSSKGKQTLPSEPEKQCLICKGGCQTIMKCKRFAEF
FT                 SVDSRWAAVRECKLCRKCLRKHNGSCRQQKPCGMNGCSYLHHPLLHTAERQ
FT                 QATAETSPAAPAETTQQSCNVHQGQSKLLFRILPVILYGPSKTVRTYAFID
FT                 DGSELSIMEQSLADEIGVKGPRTSLCLKWTGGSQRLENSSQRVSLQISSNK
FT                 DLSKKYQLTSVQTVQSLQIRPQTLLYADMQETYRHLAGLPIESYENASPRI
FT                 LIGLDNLNLGHPLKSQEGRPHEPIAVKTRLGWTIYGSCSTDERITHSVNFH
FT                 SIEICQCNQYSGEDLHQAVKSYFSLDSMGIVKPNKLLLSQDDQRAQFLLES
FT                 FTKYHDGRYESGLLWKYENVRLPDSKAMALKRWECLDRRMKNDQQLAAVVR
FT                 AKVEDHVAKGYVRKLTDEELQAEYPRVWYLPIFPVVNPNKPGKTRLVWDAA
FT                 AIAYGVSLNTMLLKGPDLLTSLLSVLIQFREYKIAVCGDIREMYHQVQIRD
FT                 VDQQCQRFFWKEKITDAEPSTYIVQVMTFGACCSPSTAQYVKNLHAGKFQQ
FT                 EHPAASEAIVKRHYVDDMLLSVEHEAEAIQLTQDVRKIHASAGFEIRNWAS
FT                 NSPAVLDQLNETSEAEKSFSDSSSFEKILGMWWNPSSDHFTFKISKRMDEI
FT                 LLFGNRRPTKREVLRTLMMVFDPLGLIGHFLMVLKTLLQEIWRSSIGWDET
FT                 ISDQHFEKWSTWCAALPGITEIKIPRCYRSLTSVSECNEIQLHVFVDASEA
FT                 GFAAVAYLRFQEGSNIECALLGSKTRVSPLRFLSIPRSELQATVIGVRLAD
FT                 TICKSLSIKVKQRFFWTDSKDVLCWLNSDHRRYSQFVAFRVSEVLETSDVR
FT                 EWHWIPSKQNVADEGTKWSSNIDLSTSSRWFNGPEFLWKSTDYWPTPKHRI
FT                 GNTNEELRPHLLLHTRVTACLIDFDRFSDWRKLLRCTAYVLRYVRNLKLSA
FT                 EKRERKIGPLSHQELSDAEEYLHREAQKNAFADEISILFRDRASENPDKHL
FT                 PRNSPLFRQCVFLDETNIIRVRGRTQACKFITRDAAQPIFLPRTHPITKLI
FT                 LFDFHRRFNHQNHQTTVNEVRQRYRIPKLKVAYRKICKECQKCKNDQAFPR
FT                 PPIMSDLPPQRLAACTRPFTYMGIDYFGPMTVTVGRRSEKRWGVLATCLTI
FT                 RAIHLELAHTLTTDSCVLVIRNIMARRGTPAVIYSDRGTNFQGASKELREA
FT                 VQNINQDQILKEFTTPHTKWTFIPPASPHMGGAWERLIRSVKTNLSKLQWG
FT                 RLPTDEVLHSTLLEIENVVNSRPLTDIPIDDDESPVLTPNHFLIGSSNGLK
FT                 PWVPFNDSPVILRNSYKVSQVMANEFWQMWLRDYLPDLTRRTKWLTKEKPI
FT                 LVNDIVVIVDPKAPRNSWPLGRVIATRPGPDGQVRSATVQTSHGIYERPSV
FT                 KLAVLDVGVRDQDASGGPSAHSGG"
XX
SQ   Sequence 6028 BP; 1713 A; 1509 C; 1467 G; 1339 T; 0 other;
     ttttataaat tctttcatcg aattgagaga tgtcgtccaa ggcgaattcg aagcattcca        60
     aagctggatc caataacgga gttagtacag cggtgacagc tagttcccct acgattgtgc       120
     cccttgcgga tgctgcaata ggcattacca ccgaggtaaa tgtagataag caaatctctt       180
     atgcccatag gacgggtaca attccgaaac atgttgctaa caaacctggt agtatcgtaa       240
     gcgtcctgag acgcaacccg ccgcgagacg cgcgtccggt ccgccagtca agttgtcagt       300
     tgtgtgatgg gctagataat ttggaaatgg ttcagtgcga tgcgtgcaaa gaatggtttc       360
     actgccagtg cgtgaatata acgaaggaca tcgagaacaa cagttggagt tgcacaaaat       420
     gtgtggtttt attgcgccaa gcgtctgccg accccccacg gaaggaccaa tcttcgcagc       480
     gatctaggag cagtggaaag agcgcacaaa gtgaggcgag gaggagattg aagctgcagt       540
     tgcagaagat cgaagaggaa aagaaattag ctcagcagtt cctggagaag aaatacgagg       600
     ctcttctaga atatggcagt gagtcgtcga cagcggtgag tgacagcgag tcgatatttg       660
     accaagcgtc gaagatcgaa caatggatgg ccgatacaga tcgtcttgga gtcgaagctg       720
     attccggact tgcggttgag gaggtggatg tgcacgtggc gaacaacgcg cgacggccta       780
     cagagcaatc cgctcgaaac ctcggacaag acgtcgatca acctgagtat catcagagtc       840
     aacaaccgct accaccgaca ggaccaaact tccagttcgt aaaccctcca cttatcacca       900
     gtcgtcaagc gcaaccgcaa cctccgtaca cgagaaggga tacattagtg caggcgaatc       960
     agttcgttcc agaactgcga tctactccaa tgcagcgtga tcatctcgaa ccgatgtctc      1020
     agccagtgca gtccatcggc gatgaaacgg tctgcgttct caatcgaagc cagttagcgg      1080
     cacggcaagc ggttccaaaa gagctcccag aattcagcgg aaatccggaa gattggcccc      1140
     ttttcttctc ggttttcaac agttcgactc aaatgtgcgg attctccaac gaggagaaca      1200
     tgctgcgtct ccgaaaatgt ttaaaaggaa aagcgttgga agcagtgaga tgccgtctgc      1260
     tccatccttc taacgtcgct ggcgtgatgt ctacgctacg aatgttgtac ggcaggccag      1320
     aagcgatcgt acaggcgatc gtgaagaaag ttcgcgctct accgtcgccg aatatcgacc      1380
     gattagagac ggttgtaaac ttcgcgctca ctgtagagaa cttggtagca acaatccaag      1440
     cttgtggagt aaacgacttc gtctacaacg cttcgctgcg gtacgaacta gtggagaggt      1500
     taccgtcatc cttgaagcta gattgggcga aatattccag gaacacacca aatcccaact      1560
     tggtcgattt cagtacctgg atgtactcaa cggcggaaga tgctagctca gtgatggcct      1620
     cagctagtgg agacaccaaa cctcgcttca acaagaagga tggtttcctg aacgtacacg      1680
     cggaatatga atccggaaat ggcaagcttc aagtggtgtc ttcaaagggg aaacaaacac      1740
     tccccagcga accagaaaaa cagtgcctga tctgtaaggg cggatgccaa accatcatga      1800
     agtgtaagcg atttgcagaa ttcagcgttg actcaaggtg ggccgctgtt cgcgaatgca      1860
     aattatgtag gaagtgccta cgaaaacaca atggttcatg ccgacaacag aaaccatgcg      1920
     gtatgaacgg ttgctcatat ttacatcatc ctcttctcca caccgccgaa agacaacaag      1980
     cgacggcaga aactagtccc gcagcccctg ccgaaacaac tcagcagagt tgtaatgttc      2040
     atcaaggcca gtcaaaactt ctcttccgaa tccttccagt catcctgtac ggaccatcga      2100
     aaactgtgcg aacctacgcc tttatcgacg acggctccga actttccatt atggaacaga      2160
     gtcttgcaga tgagattggt gtgaaagggc cgagaacatc actgtgtctg aaatggactg      2220
     gaggttcaca gcgtttggag aactcttcac agagagtgag cctacagatc tctagcaaca      2280
     aagatttgtc gaaaaagtac caattaacat ctgtacaaac tgtacaaagc ctacagatac      2340
     ggccgcaaac attgctgtat gctgacatgc aagaaacgta caggcacctc gccggccttc      2400
     caatagaatc gtacgagaac gctagcccaa ggattttgat aggtctagat aaccttaacc      2460
     tcggtcatcc gctgaaaagc caagaaggtc ggccacatga gccgatagcc gtcaagacac      2520
     ggcttgggtg gactatctac gggagctgtt ctacagatga aagaattacg cattccgtaa      2580
     acttccattc catcgaaata tgccaatgta accagtattc tggcgaagac cttcatcaag      2640
     cagtgaaaag ctacttttcg cttgatagta tgggaatcgt gaaaccgaat aaacttctcc      2700
     tgtcgcagga tgaccaaaga gcccagtttc tgcttgaatc attcacaaag tatcacgacg      2760
     gacggtacga atctgggctt ctctggaagt acgaaaacgt tcgtcttccg gacagcaaag      2820
     caatggcgct caaaagatgg gagtgtctag atcggaggat gaaaaacgac cagcagttag      2880
     cggccgtcgt aagggcaaaa gtcgaagatc atgtcgctaa agggtacgta cggaagctga      2940
     cagacgaaga gctgcaagca gaatatccac gtgtatggta tctaccaata tttccggtag      3000
     taaatccgaa caaaccaggc aaaaccagac tcgtttggga cgctgcggca attgcatacg      3060
     gagtttccct caacactatg ttgttgaagg gcccggatct gctcacttca ctgctatctg      3120
     ttctgataca attccgagaa tataagattg cagtctgcgg tgacatccga gaaatgtatc      3180
     accaggttca aatccgagac gtcgaccagc aatgccaacg cttcttctgg aaggagaaaa      3240
     ttactgacgc cgagccaagc acgtacatcg tacaggtgat gacgttcgga gcctgttgct      3300
     caccaagtac ggcgcagtat gtgaaaaacc tgcatgctgg caaattccag caggagcacc      3360
     ccgcggcctc tgaagcaatc gtcaagcgac actacgtcga cgatatgctt ctgagtgtgg      3420
     agcatgaagc agaagcaatc caactaacac aagacgtcag aaagatacat gcatcggccg      3480
     gatttgaaat tcgcaactgg gcttccaatt ctccagcagt tctggatcaa ctaaacgaaa      3540
     cttccgaagc tgaaaaaagc ttcagcgata gcagctcgtt tgaaaagatc cttgggatgt      3600
     ggtggaaccc atcttcagat catttcacgt tcaagatctc caagcgaatg gacgaaattc      3660
     ttctgtttgg caatcgtcga ccgacgaaac gggaagttct gcgtactctg atgatggttt      3720
     ttgacccgct aggcctgatt ggccattttc tgatggtgct gaagacactt ctccaagaaa      3780
     tatggcgatc ttcaatcgga tgggacgaaa cgatcagcga ccaacacttt gaaaaatggt      3840
     caacctggtg tgcagccctt cctggaataa cagaaatcaa gattcctcga tgctatcgct      3900
     cattaacttc tgtgtctgaa tgcaatgaaa ttcagcttca cgttttcgtt gatgcgagtg      3960
     aagcgggttt tgcagcggta gcgtatctca gatttcaaga agggtcaaac attgagtgcg      4020
     cactattagg atcgaagact agagtttcac cgctcagatt tctgtccatt ccacgatccg      4080
     aacttcaggc caccgtcatc ggcgttcgcc tagccgatac aatctgcaaa tcactgtcta      4140
     tcaaggtgaa acaacgattt ttttggacag attccaagga cgttctgtgt tggcttaact      4200
     ctgatcatcg ccgctatagc cagttcgtcg ccttccgagt gagcgaggtt ctggaaacat      4260
     ctgacgtacg agaatggcac tggatcccaa gcaagcaaaa cgtggctgat gagggaacaa      4320
     agtggagctc gaatatcgat ttgtctacat cctcacggtg gttcaacggt ccagagttcc      4380
     tgtggaagtc aaccgactac tggccaacgc ccaaacatcg tatcggaaat actaacgaag      4440
     aacttcgtcc gcatctcctg ttgcacacgc gggtcactgc gtgcttaatc gattttgacc      4500
     gcttttccga ttggcggaaa cttctccgct gtactgccta cgttctccgt tacgtgcgta      4560
     acctgaagct gtcagcggaa aagagggaac gcaaaatcgg gccactatct catcaggaac      4620
     ttagtgatgc cgaagaatat ttgcaccgtg aagcacagaa gaatgccttt gctgatgaaa      4680
     tatccatcct tttcagagac cgggcgtcgg aaaatcccga caagcattta ccacggaaca      4740
     gcccgctctt ccgtcagtgt gttttcctag atgaaacaaa catcatcagg gttcgaggaa      4800
     gaacacaagc gtgcaagttc atcacccgtg acgcagctca accaatcttc cttccacgta      4860
     cacacccaat caccaagctc atccttttcg acttccatag acgtttcaat caccaaaacc      4920
     atcagacaac ggtcaacgaa gtgcgccaac gctatcgcat cccgaaactg aaggtagcct      4980
     atagaaaaat ttgtaaggaa tgccagaaat gtaaaaacga ccaagccttt ccacgccctc      5040
     cgattatgag cgacctgcct ccgcaacgtc tcgcagcctg cacacgtccg tttacataca      5100
     tgggaataga ctactttggt cccatgactg tcactgtagg acgacggtcc gaaaagcgtt      5160
     ggggggtctt ggcaacgtgc ctcacaatac gcgccattca cttagaacta gcccacacac      5220
     tgacaaccga ttcctgcgtc ttggtaatcc gcaatatcat ggcccgaaga ggaacgcccg      5280
     cggttatata tagcgaccgt ggcaccaatt tccagggtgc cagtaaagag ctaagagaag      5340
     cggttcagaa tatcaatcag gatcaaattc tgaaagagtt tacaacacct cataccaagt      5400
     ggaccttcat tccaccagcc tctccgcaca tgggcggggc atgggaacgc ctgattcgaa      5460
     gtgtgaaaac caatctgtcc aaactgcagt ggggaagact tcccaccgac gaggtactac      5520
     atagcacgct gttggagatt gagaacgtgg tcaactcgag gccattgacg gatatcccaa      5580
     tcgacgacga tgaatcacca gtcctgacac cgaaccattt tttgattggg tcatcgaacg      5640
     gactaaaacc atgggtacct ttcaacgata gccctgtgat actccgaaat agctataaag      5700
     tgtcgcaagt tatggccaac gaattttggc aaatgtggtt gagggattac ttgcccgatc      5760
     tgacccggcg caccaagtgg ctcaccaagg agaagccaat cctagtcaac gacatcgtgg      5820
     taatcgtaga tcctaaagct cctcgcaaca gttggccatt aggccgagtc atcgccacta      5880
     gaccaggtcc agacggccaa gtaagaagcg ccacagtgca aactagtcac ggtatctatg      5940
     aacgtccttc cgtaaagctc gccgtgctcg acgtaggcgt tagggatcaa gacgcatcag      6000
     gaggaccttc ggcgcattcc ggggggac                                         6028
//
ID   BEL-753_AA-LTR repbase;    DNA;    INV; 705 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-753_AA-I;
KW   BEL-753_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-705
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-705
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 578-578 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 705 BP; 240 A; 137 C; 118 G; 210 T; 0 other;
     tgtaagcgcg cccgtcgacc agcgagccca ttgtgtgtag ccttccaccg tgctacctaa        60
     aaatgctacc actacttgac acgaccagtc aacgatctac gatcgtaatc tgtcatgaag       120
     agatgataca gcaaaaacat ccatgtaatg cctagtacca aaatagactg aattagatct       180
     cttaaaatta gtgcttaaac tattgtgaac tgaaactaaa ttgtcactta atacctaaat       240
     tatcaaaagt ggttgaattt taatgaactt ataatctata accgctcata aggtgaggaa       300
     atcacatttg ctgaaattgt tgatttgacc ttacgatttc ttgcacagta aatacgttta       360
     ggaaatagtg ggaataacgt cgaaatccac gatttgcaat taccctattg tttgcctacg       420
     tagctggtaa gaaacataca ctcaaaattc tatttaccat ccgctaattg cattttatta       480
     tgcaacaaca taacagctgc aagtgtacga ccgataggga tgctcaagaa gaacttgatg       540
     tagaagtgta gcgaattact gaaagtaagt aaaattataa aaagtatgct tcgtgaacta       600
     atttatatgt tacatctagg aatttataac tctctctcac acatcatcaa taaagtgttg       660
     ataaattcgt ttaattctgg cgaccttcgc agctattctt caaca                       705
//
ID   BEL-754_AA-I repbase;    DNA;    INV; 6223 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-754_;
KW   BEL-754_AA-I; BEL-754_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6223
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6223
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           700..6099
FT                 /product="BEL-754_AA-I_1p"
FT                 /translation="MMDGQQQGQLPLLQSKAQLVARRATLLAALGRAEAFA
FT                 TSYDAQRDLAQLPLRLEYLNGLWNSLEAVQSQLEDGETTQEGRTEHACIRA
FT                 EFEPRLFEIKASLISKLPPPSVIAAQVPQPPQGSSTLSGIKLPTISLPEFD
FT                 GDYMQWLAFHDTFLALIHSNPDVPDIQKFHYLRAAVKGEAAQLIESIGISS
FT                 ANYALAWETLRNRYSNDYLLKKRHLQALFDIPCMKKESAASLHALVDEFER
FT                 HTKILNQLGEPTDSWSTVLEHLLCTRLHNDTVKAWEDHASTVEDPNYACLI
FT                 DFLQRRTRVLESISVNNHGPNLVPSTGSPAQQPRKHHHHSQFRLSSCAATT
FT                 NLGEKCIACGQSHAVIRCQRFINLSTSERQQLVSSKRLCHNCIKGNHFARN
FT                 CPSSFNCKKCNRRHHTLLHPEQSEASRKPTNQGSSCPLPSTSTNSSTSSLS
FT                 ESATQSMVAASEATLPVEVSTALQHPRENVFLLTVVVKVIDNYGVEHLVRA
FT                 LLDSASQPNLITHRMARILNLRRQKVNVTVQGAGKLSNTIRESVFAQVQSR
FT                 KGGFSCGVNFLVMEKLTANLPSQNVAIAGWKIPNDLFLADPSFNESQPIDM
FT                 LLGAKHFYSFFPSAARIKLDENLPLLVNSVFGWIVVGSSGTASPAECASTA
FT                 NETVAVSMISLEERLERFWQTEELTVSDNYTVEERQCETLFASSVSRNSEG
FT                 RYIVRYPRKPDFNEKIGESKDNALRRLEYLERRLERNEKLKQEYHQFMREY
FT                 LSLGHMRLVEADDERNSPIYYLPHHPVIKEASTTTKVRVVFDGSAKTSTGF
FT                 SLNEALCVGPVVQEDLLNIILRFRTFPVALVGDIAKMYRQVLVHPDDSQLQ
FT                 RILWRFSKQTPVQTFELLTVTYGLAPSSFLATRTLQQLAEDEGKAFPKGTP
FT                 ALKKSFYVDDFIGGAQSVEEAIHLRTELSELLRMGGFELRKWTSNRLEVLQ
FT                 GLDNEQVGTQSSLHFAPHETIKALGISWEPEADFLRFDSQIQSSDEPPTKR
FT                 SILSDIAKLFDPLGLIAPVVVRAKIIMQELWLLSCDWDDPVPEPVKSKWES
FT                 YHQDLLKISEHRVNRYAFLPNSIIQLHTFADASQAAYGACTYARCEDEEGR
FT                 VRIQLLASKSRVAPLKRLTIARLELCAAVVAAHLHDRIKKAIDVNVSSSYF
FT                 WSDSAVTLQWLRSPPNTWPTFVANRVSEIQQYTHGCQWKHVRGIENPADLV
FT                 SRGISVEEFLKSDLWNQGPAWLTSSSKEWPVSVPLRVPEEELEIKSTVAVV
FT                 QATTTVNPLFMRWSSYMRLLHVIGYILRFISNTRSKVRTQPSSYNVGLSLT
FT                 VAEIAKAKALLVRLAQADGYAEEIKQLRQQKAVQKQSHIRRMNPFFDSEGV
FT                 LRVGGRLNHALLPYQAKHPALLPANHPFTRLIFEHFHRKLLHGGGRQLITA
FT                 IRDEFWPPRGRRLAQNVVRNCFRCTRLNPTPAQQQIGQLPAQRVIPSRPFS
FT                 VTGIDYAGPLYLRPIHKRAAPAKAYLCLFICFSTKAVHLELVSDLSTNGFL
FT                 NSLRRFIARRGRPTHIHSDNGKNFEGAKNELSELFHRFQDRTQQDHIVSAC
FT                 ADEGIVWHLTPPKAPHFGGLWEAAVKVAKRHLFRQLGSVRLSFEDMCTILT
FT                 QIEAIMNSRPLLPTTEDPDDLTALTPAHFLIGSSLQALPGPDLYSIPKSRL
FT                 EHYQQLQQHVQRFWIHWKHEYLQELQNDTRGWKRNDSILPGKMVILVDENQ
FT                 PTIRWPLARIEAIMPGKDQLTRVVSLRTARGIITSPITKICLLPFANDLPD
FT                 NDEHPTATRAPPQNQLASDSAIDLSKHEN"
XX
SQ   Sequence 6223 BP; 1607 A; 1614 C; 1415 G; 1587 T; 0 other;
     taaaacttgg tgccgtgacc aggattccat cctatccacc acgtgctggg ctgtctactg        60
     ggcgctgcca tcttggacat cagagtcgaa ggagcctcgt gatcctgctt gtcattgaat       120
     acaaggctca attcatcggg cgcaaggtaa cgacctgtcc gatcggattt tgcgggtatc       180
     acaggtgccc tctagattgt tttcttttct tctgcatgtg ctgattatca cggatcgatc       240
     gctcaagaca attgctgcca gctactccgg agtgcggctt tgtctccggc ctcaggcgcc       300
     atcttcccgg ccacctgcta gtacaattac cattgttcat cgtggcgtcc ctagccgcgg       360
     tggtttctta acaacacgtg ttctgctacg acgagactgg cctgcgtcgt tcagctgctg       420
     tagtgtcccc agttggagca accttcgagt taccattgcc ttcttctcac gtacatacgt       480
     caagctcaca acgcctacca tcgacaaagg gacgatcttc agatttgtac gcttagtacg       540
     gacggtactg cttccggctt gagttgaata caaggcattt ctttgccttg gacaaggtga       600
     gttcctttcc aagtgcgtta tagttctctc tgtgggtcta cttttggtcg tttgattgac       660
     agatcgctcg cttaattgga aatcgcgctc ctggaaagga tgatggacgg tcaacagcag       720
     ggccagctac cattacttca gtcgaaggcc caactagtgg cacgacgagc gacacttctt       780
     gctgcattgg gccgggcaga ggcattcgcg acgagttacg atgcgcagcg cgacctggcg       840
     caactacctt tgaggctgga atacctaaac ggcctttgga acagcctaga ggcagtgcag       900
     tcacagttgg aggacggtga gacaacccaa gaaggtagga cagagcatgc atgcattcga       960
     gccgaatttg agcctcgcct tttcgaaatt aaagccagtc tgatatctaa attgcccccg      1020
     ccttctgtta ttgccgcgca agtccctcaa ccccctcaag gttcctccac tctctctggg      1080
     ataaaattgc cgacaatttc tctgcctgag tttgacggag attacatgca atggcttgca      1140
     ttccacgaca cctttcttgc actaatccat tcaaatccag atgtcccgga tatacagaaa      1200
     ttccattatt tgcgggcagc cgtcaagggt gaagctgctc aattgattga atccattgga      1260
     attagttccg ctaactacgc tttggcttgg gagacactga ggaatcgata ttcaaacgac      1320
     tatctcctta aaaagcgaca tctgcaggcg ctttttgaca ttccctgcat gaaaaaggag      1380
     tccgctgcat cgctacacgc attggtggac gagtttgagc ggcacacgaa aattctaaac      1440
     caattaggag aaccgaccga ttcgtggagc actgttttgg agcatttgct gtgtacacgc      1500
     ctgcacaatg acacggtgaa ggcttgggag gaccatgcgt ctactgtgga ggaccctaac      1560
     tacgcgtgtc tcatcgattt cctccagagg cgcaccagag tgttggagtc tatctcagtg      1620
     aacaaccatg gaccgaatct cgtcccatct acaggaagcc ctgctcaaca gccgagaaag      1680
     catcatcacc attctcaatt cagactttcg tcgtgtgcag ctactacgaa tttaggggag      1740
     aaatgcatcg cttgcggcca atcgcatgcg gtgattcgat gccagaggtt catcaatcta      1800
     tctacaagtg aacgtcaaca gctagtaagc tcgaaacgtt tgtgccacaa ctgcatcaag      1860
     ggaaaccatt ttgctcgtaa ttgtccgtct agtttcaact gtaaaaaatg caatcgacgt      1920
     catcatacgc ttctgcaccc tgagcagtcc gaagcttcac gcaagcccac caatcaaggt      1980
     tcatcttgtc cattaccatc tacttcaacc aattcgagca cttcatcttt aagcgaatca      2040
     gcgacgcagt ctatggttgc tgcttctgaa gctactttgc ctgtagaagt cagtacagct      2100
     cttcaacatc cacgagaaaa tgtttttctg ctcactgtag tagtaaaagt catcgacaac      2160
     tatggggtag aacatctggt tcgtgcgctt ttggacagcg cttcacagcc aaatcttatc      2220
     acccatcgta tggcaagaat tcttaattta cgtcggcaaa aggtgaacgt aacagtacaa      2280
     ggagctggaa aactctcgaa cacaattcga gaatccgttt ttgctcaggt tcaatcccga      2340
     aaaggcggtt tttcatgtgg ggttaatttt ctggtgatgg aaaagttaac ggccaacctt      2400
     ccttcccaaa atgttgctat agcagggtgg aaaattccaa atgatctgtt ccttgcagac      2460
     ccgtcattca atgaaagtca gccgatagac atgttgcttg gggcaaagca tttttattca      2520
     tttttcccca gcgctgcacg cattaagctc gatgaaaatc tgccgctttt ggtcaacagt      2580
     gtttttggct ggattgtcgt tggatcctca ggtaccgctt cccccgctga atgtgcatcc      2640
     acagcaaatg aaacagtcgc agtttccatg atctcgttgg aggaacgctt ggagaggttt      2700
     tggcagacag aagagctaac agtatcggac aactatacag ttgaagagcg gcaatgtgaa      2760
     accctattcg cgtcttcagt atccaggaat tccgaaggcc gctacatcgt gcgataccct      2820
     cgaaaacctg acttcaacga gaagatcggt gagtccaagg acaacgctct tcgaaggcta      2880
     gaatatctag agagacggct ggaacgaaac gaaaaattga agcaagagta tcatcagttt      2940
     atgagagagt atctctccct cggtcacatg cgcttggtcg aagcggacga cgaacgaaac      3000
     tctccgatat attacctgcc ccaccacccc gttattaagg aggcaagcac gacgacgaag      3060
     gtccgtgtcg tgtttgacgg ttctgcaaaa acctccaccg gcttctctct caacgaagct      3120
     ctctgtgttg gtccagtggt gcaggaggat cttctcaaca tcattttacg ttttcgaaca      3180
     ttcccggtcg ctctcgtcgg cgacatcgct aaaatgtaca ggcaagtact agttcatccc      3240
     gacgactcac aactgcagcg tattttatgg cgtttctcaa agcaaacccc tgtgcaaacc      3300
     ttcgaacttc tcactgttac atacggccta gctccatcat catttttggc aactcgcact      3360
     ctccaacaat tggccgaaga tgaaggaaaa gcgttcccca aaggtacacc ggcattgaag      3420
     aagagcttct acgttgatga ttttattggc ggagctcaat ctgtagagga agcaatccat      3480
     ctacgaactg aactcagtga gctgttgcga atgggaggat ttgagctacg gaaatggaca      3540
     tccaatcggc tggaagtcct acaaggtctt gacaacgagc aggttggcac acaatcctct      3600
     ctccatttcg ctcctcatga aactattaag gcgcttggaa tcagctggga gcctgaagca      3660
     gattttctgc gatttgattc ccagattcaa agtagcgatg agcctcctac taagcggtcg      3720
     attctttccg atattgccaa gctctttgat cccttagggc tcattgcacc agttgtagtt      3780
     cgagcaaaga ttatcatgca agaattgtgg ttgttgtcct gtgactggga cgatcctgta      3840
     ccagagcccg tcaaatcaaa atgggaatcc taccatcaag accttttgaa gatctccgag      3900
     catcgggtga accgctatgc ctttctccca aattcaatca tccagctcca cacttttgca      3960
     gatgcatctc aagctgcgta cggtgcctgc acgtacgccc gttgcgaaga cgaagaagga      4020
     agggtgcgta tccaactgct ggcatcaaaa tcccgagtag ccccgctaaa gagactcacc      4080
     attgctcgac tggaactatg tgccgccgtt gtagcagcgc atttgcacga tcgcataaaa      4140
     aaggccatcg acgtgaacgt ttcctcatca tatttttggt cagactctgc tgtgacccta      4200
     caatggcttc gatcaccgcc gaacacatgg ccaacctttg tggccaaccg agtctcggaa      4260
     attcaacaat atacgcacgg ctgtcagtgg aaacacgttc gaggaatcga gaatccagcg      4320
     gatctagtgt cacgaggcat atctgtggaa gaatttctta aaagtgactt gtggaatcag      4380
     ggtcccgctt ggctgacaag ttcatctaaa gaatggccag tatcagttcc cttacgtgta      4440
     ccggaagaag aattagaaat caaatcaacc gttgctgtcg ttcaagcaac tacaaccgtt      4500
     aacccgttat tcatgcgctg gtcctcctat atgcgtctgc ttcacgtgat tggatacatt      4560
     ctgcgtttca tttctaatac ccgctctaaa gtccgcaccc aaccgtcgtc gtacaatgtc      4620
     ggtttgtcgc taacagttgc tgaaatcgcc aaagccaagg cgctccttgt tcggttagcc      4680
     caagcagatg gatacgcaga agaaataaaa caactgaggc aacagaaagc cgtgcaaaaa      4740
     cagtcacaca taagacgcat gaatccgttt tttgattccg agggagtgtt gagagtcgga      4800
     ggtaggctta accatgctct tctgccgtat caggccaagc accctgcttt gttgcctgcc      4860
     aaccatccct tcacacgatt gatttttgag cactttcatc gcaaactact ccacggtggc      4920
     gggcgtcagc taataacagc aattcgcgac gaattttggc ccccacgagg tcgaaggctg      4980
     gcacagaatg ttgtgaggaa ttgtttccgc tgtactcggc tgaatcccac gccagctcaa      5040
     cagcaaatcg gccagctacc agctcaacga gtcataccaa gccgcccatt cagtgtcact      5100
     ggaatagact acgctggtcc actatatctc cgtcctatcc acaagcgtgc tgcacctgcc      5160
     aaggcttatt tgtgcctgtt tatttgcttt tcaaccaaag cagtgcacct tgaattggtc      5220
     agtgatttgt ccactaacgg tttcctcaat tcacttcgtc gttttattgc acgccgtggc      5280
     cgaccaaccc acatccattc agacaatggt aaaaatttcg agggggcaaa aaacgaattg      5340
     tctgagctct tccacagatt tcaagaccga acccagcaag accacatcgt ttccgcttgc      5400
     gccgatgaag gaatcgtttg gcatctaacg ccgcccaaag ctccacactt cggcggtttg      5460
     tgggaagcag cagttaaagt agcaaaacga cacctatttc gtcaactagg gtcagtgcga      5520
     ttgtcattcg aagacatgtg tacgatcctc actcagatcg aagccatcat gaattcccgt      5580
     ccgttattgc caactactga agacccagat gacttgacag ctttaacgcc agcacacttc      5640
     ctaattggat cgtcgttaca agccctgccc ggccccgacc tgtacagcat accaaagtcc      5700
     agactggagc actaccagca gttgcagcaa catgtgcagc gcttttggat ccattggaaa      5760
     catgagtatc ttcaggaatt gcaaaacgac acccgcggct ggaaacgcaa tgattccatc      5820
     cttcctggta aaatggttat cctagtcgac gagaatcaac cgaccatcag gtggcccctt      5880
     gctcgcatcg aggcgatcat gccgggaaag gaccaactaa cacgggtagt gtcattacgt      5940
     actgctcgtg gtatcatcac aagtcccatc acgaaaatat gtctgcttcc attcgccaat      6000
     gatctcccag acaacgatga acatcctaca gcgaccagag cacctccgca gaatcaactg      6060
     gcgtcggatt cagcaataga tttaagcaaa cacgaaaatt gaattagtta ttaagcacag      6120
     aatcaatatt ttgttccatg aattatggta gtctcatcca atttgttttt gtttacggtt      6180
     ttctttactt cttcttgaac atgtatgttc aaggtggcgg gta                        6223
//
ID   BEL-754_AA-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-754_AA-I;
KW   BEL-754_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-478
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-478
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 598-598 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 478 BP; 145 A; 100 C; 99 G; 134 T; 0 other;
     tgttgaaacc cactatgtaa acgtcacgtg aaagatcatt tctcactcga tagctggtgc        60
     taccgggtgc ataattagac gagattttgg cctttctggc aactaggtat gatcagcata       120
     cagtgcaatc aattattgta attaacaatc agttcagttg tcatcagtct gtgaaggaga       180
     aaagatctaa aataaaagtt caaaattaaa gtgtcaactg taaattaaat tttagaagaa       240
     taaaagtgca tatacttacc attgccgttt aaatacctgc ctgtgtggaa gtcccgaagt       300
     gcattgcaag actgtgcgac tgcgtgctgc gttggagtgt tcccgttcaa ctatatatcc       360
     aaccacatcc ttcgatttgc tgctgttcac cgtaaggtac cgccccaata gttgcccctt       420
     cgccgattcg ttcggattcc gatagaaaaa aggacacaac gtagggtaag cgacatca         478
//
ID   BEL-755_AA-I repbase;    DNA;    INV; 7376 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-755_;
KW   BEL-755_AA-I; BEL-755_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7376
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7376
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 626-626 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           769..6168
FT                 /product="BEL-755_AA-I_1p"
FT                 /translation="MTVPELRQLVKQERHAMISLENIEEFLLTYQEDRDKC
FT                 TVQLRLKKLDDVYEKYCEVRVNIEVITDELDFEQGAEGGDEDGVSAQAALA
FT                 EARQRENAEVFKEFENKYFRLKQELLSKIGASTGVVGEPKPEVQVNQTSRT
FT                 RYPELKLPMFSGKLSEWMNFRDNFKSLIHDNSQLSTIDKFNYLRTSLKDDA
FT                 LYQINQIQVTSANYSLAWGILESKFENHKLIAQEHLKALFAVAPMKFESFQ
FT                 ALNHVLMTFKINLQQLEKLGEDTDKWSTLLAFMLAQKLDDDTLRLWETHHS
FT                 SKNIPSYQAMVDFLENHCAILQSTASRKNNDFKKSYKNPVVHAAVSSKSCL
FT                 VCNNGPHTVEQCTSFGRMKVIDRKSLARKLGLCLNCLRSGHFVADCSKPTC
FT                 GKCGQRHHQLLHPHTSYTGQGPHANQPSSQKHNKGPQAANAQSQQSNSTQN
FT                 RNHSQHPQITPTPSTSSQNAFSPPPTNSSTVHHTATPSKTHYPSNTALLST
FT                 AIVKLGDRHGNTVHARALLDSGSQICLITENLSQKLNFRRLRENLPVNGVG
FT                 GSLSVAKQAILATVLSCNSSYMSCEVKFFVLSKITSSLPQQFIDTSSWNLP
FT                 SGISLADPAFNEPGSIDVILGVTIFYELLLNEQLKLSKMGPILHNTELGWI
FT                 VAGEVPETAVVSYSAVASSSVTTEEVFEQLTKFWELESCQTKSCLSIEESA
FT                 CEAIFEKTTTRDPDGKFRVQLPKRKHMLEKLGNSKTIAKKRYLSMEKRLND
FT                 NHEMKAMYTAFMHEYLHMGHMEEVLTDEDEGPDYYIPHHAVMKPDSTTTKL
FT                 RVVFDASCPTDSGVSLNDVLMVGPVVQDDLRSILLRFRLFKYAVVGDAEKM
FT                 YRMVWQHVSDQQLHKIFWRDTVEEPLRTYRLKTVTYGTSSAPYLATRCLNK
FT                 CAEDGVERYPAAAAVVKKSFYVDDMLAGTHTIEEGKLLCKDVLDLLKGSGF
FT                 NLRKWNSNHPEVLQEIPSHLRDDRAVLDLDEKATVKTLGLTWEPTTDTLRI
FT                 KVPDWKPEAVVTHRVVLSEVAKLFDPYGLVGPVIVLGKLFLQELWKARYSW
FT                 DELLNEDLQSRWLEFRSNLSELVSISVPRWIAFGRDVISCEIHGFSDASEK
FT                 AYGATIYLRCVSMNGEITVNLVMAKSKVAPLEDLSRRKKKQCIPRLELSAA
FT                 LLLAHLYETVSSSLKIASTAFFWTDSTIVKCWISSHPSRWQVFVGNRVSEI
FT                 QHVTEGGVWNHVPGIENPADIISRGATPAEIANNSLWWNGPEWLKKDVGYW
FT                 PKNMQVPEQQFDAVTLEERPLVSAALQVMPPSEVFTLRSSLINLVRLTSWI
FT                 RRFTFNCRQRDHQQRKKGMLTAEEHDSALLALVRLAQSECFALELADIAAK
FT                 KEVRPSSKLRNLHPVMIDGVICVGGRLGNAPVSLGRRHPMILDRHHPLTKL
FT                 ILIDYHHRLLHGGPQLMIACVRERFWPLSVRSLAKKVMHECVKCFRAKPST
FT                 HEQLMGDLPLERVAPAPAFQRVGVDYCGPFELQPATRRAAPLKCYLSIFVC
FT                 LVCKAAHVEIVMDLTSEAFLAALRRFVARRGRPELILCDNASNFVGARREL
FT                 YELHRMFQQQQFQERVSTEAARDLIEFKFIPARSPNFGGLWEAAVKSLKGH
FT                 MKRVIGSKMLKIDEMHTVVTQIEACLNSRPLTPLSNDPRDLEVLTPGHFLI
FT                 QRPLTAIPEPNLSELPEGRLSRWQRVQNYSQQIWKCWSTDYLSSLQIRNKW
FT                 TRQRSNFAIGTMVLLKEDNIPPLKWKLGRVTELFPGPDGNVRVVTVRTKDG
FT                 SFRRAISKICILPLQDVEPNAEEQYPGHQ"
XX
SQ   Sequence 7376 BP; 2032 A; 1622 C; 1817 G; 1902 T; 3 other;
     ttttggtcct gacgaaccgg atttgtcaga cccgtgaaga aacgtgtgaa gtgatagtgc        60
     gcttggcttg ggttcagacg gtcaacgacc gtcgagtgta caaaagacca gtgcggtctg       120
     attgtgagcc attgtgttgg catagtggta gattgggggc aaagtgattc tgttctgcca       180
     gcgtggagat ccgctgggga aggtttcttt ccttgctgct gtgttgctgt tgttgttgtt       240
     gggttggtcc gagttgctgc tggtgtagtt tgcatgccgc cgacggttag aaaatagcgt       300
     acgtgattgc ctgatccggt ggttgcggta gttcttctgc ggtgaaaagt tcatcgtcca       360
     tctgctgtgg acatcgtcat cgatagtcag gccctaggaa agctcatcat caaaatccag       420
     ataagtacag tgtgcgtgcg attgtgtggt tgaggtggtt tggactggtt tgctttgaca       480
     ccagccatac cgaaagctct acggacggta gagaaattta ggcgctgaat gagttaattg       540
     catgcgattt tgtactcatc agcaagattc tgtggagaag gtgttttgag attctctggt       600
     ttgatcattt acatgccctt agttattgaa gattgttcga ttatattgag attttaccac       660
     ttggtggtac atttaccctg tcatctgtca atcgttcggt cgcttgaggt ctcgggagtg       720
     aatagtggct ctagtggttc atagtgcatc tacagtgctt ctacgacgat gacggtaccg       780
     gagttacgac agttggtgaa gcaggaacga catgcgatga tttcgctgga aaatatcgaa       840
     gaattcctgt taacttacca ggaagaccgt gataagtgta ccgtgcagtt acgtttgaag       900
     aagttggatg atgtgtatga aaagtactgc gaagtgagag ttaatattga agtgattacc       960
     gatgaactgg atttcgaaca aggagctgag ggtggcgatg aggatggagt atcggctcaa      1020
     gctgccttag ccgaagctcg ccaacgagaa aatgcggagg ttttcaagga gtttgagaac      1080
     aaatacttca gattgaagca ggagcttcta tcgaagatcg gtgcgtctac gggagtagtt      1140
     ggtgaaccaa aaccggaggt ccaggttaac cagacatcgc ggacaaggta tcctgagctg      1200
     aagcttccca tgttctcggg aaagttatcg gaatggatga actttcgaga caatttcaaa      1260
     tcgcttatac acgacaactc tcaactcagc actatagaca agttcaacta tctacgcacg      1320
     tccctgaaag atgatgcttt gtaccagatc aaccagattc aggttacttc agcaaactat      1380
     tctcttgcgt ggggcatcct ggagtcgaag ttcgagaatc acaagctcat cgcccaggaa      1440
     catttaaagg cattattcgc tgttgctccc atgaagtttg agagtttcca agcgttgaat      1500
     catgtcctga tgacatttaa gatcaaccta caacagttgg agaaacttgg tgaagacact      1560
     gataagtgga gcacgctgtt ggctttcatg cttgcccaga agctagacga tgatacactt      1620
     cgtctatggg aaacgcatca cagttcaaag aacattccgt cataccaggc catggttgat      1680
     ttcctggaga accactgtgc catcttgcag tcaacggcgt ctcggaagaa taatgatttc      1740
     aagaaatctt acaagaaccc tgtggttcat gctgcagtat cgagcaagag ctgtctagtg      1800
     tgcaataatg gaccacacac cgtagagcag tgtacgagtt ttgggagaat gaaggtcatc      1860
     gataggaaat cgcttgcacg gaaacttgga ttgtgcttaa actgtttacg ttccggtcat      1920
     ttcgttgcgg attgttcgaa acctacttgt ggaaaatgtg gtcaacgtca ccatcagttg      1980
     ctgcatccgc ataccagcta cacaggtcaa gggccacatg cgaatcagcc ctcctcccag      2040
     aaacacaata aaggacctca agccgcgaac gctcaatctc agcaatctaa ttcaacccag      2100
     aaccggaatc attctcaaca cccacagata acaccaactc caagtacatc ttcgcaaaat      2160
     gcattctcgc cacctcccac caattcctct actgtacacc acactgctac accatccaaa      2220
     acacactacc catcaaacac cgcattattg tcaactgcta ttgtaaaact tggtgatcga      2280
     catggaaata ctgtccatgc gcgagccttg ttggatagtg ggtctcagat ctgcctaata      2340
     acggaaaacc tttctcaaaa actcaacttc cggcggcttc gggagaattt accagtgaat      2400
     ggagttggtg gttctctttc cgttgctaaa caggctatcc tagcaacggt gctgtcctgc      2460
     aattcttcgt acatgtcttg tgaggtcaag ttctttgtac tttcgaagat aacatcaagc      2520
     ctgccgcagc agttcatcga tacatcttcg tggaatttgc catcgggaat tagtcttgcg      2580
     gatcctgctt ttaatgagcc gggatcaatc gatgtgattc ttggagtaac tatcttctac      2640
     gaattgttgc tgaatgaaca actgaagctc tcaaaaatgg gtccaattct acacaacacg      2700
     gagttagggt ggattgtcgc tggcgaggta cctgaaacag cggtcgttag ctacagcgca      2760
     gtagcctcat cgtcggtgac aacggaagaa gtttttgagc aactgacaaa gttttgggag      2820
     ttggaatcct gtcaaacaaa gagctgtctg tctatcgagg aatccgcatg cgaagctatc      2880
     tttgaaaaga cgactacgag agatcccgat ggaaaatttc gagttcagct accaaagagg      2940
     aaacatatgc tggaaaagct aggaaactcg aaaactattg cgaaaaaacg atatttgtcc      3000
     atggagaaac ggttgaacga taatcatgaa atgaaagcca tgtatacggc attcatgcac      3060
     gagtaccttc atatgggcca tatggaagaa gtactcacag acgaagatga aggtccggat      3120
     tactacattc cgcatcatgc tgtcatgaag ccagatagca cgacaacgaa actcagagta      3180
     gttttcgacg catcttgtcc tacggattcc ggtgtgtcat tgaacgacgt cttgatggtt      3240
     ggacctgtcg ttcaagacga cctgcgaagt atcctattgc ggttccgtct cttcaagtat      3300
     gctgttgtag gcgatgcaga gaaaatgtat cgcatggttt ggcaacacgt gtcagatcaa      3360
     caactgcaca agatattctg gagagatact gttgaagagc ctctacggac atacaggctt      3420
     aaaactgtca cttacggcac ctcatctgct ccataccttg caactcgctg tttgaacaaa      3480
     tgtgccgagg acggagtaga acgttatcca gcagctgcag cggtggttaa aaagagtttt      3540
     tatgtggatg acatgttagc aggaacccac acgattgaag aaggaaagtt gttgtgcaag      3600
     gacgttctcg atcttctgaa aggttcaggg ttcaatttgc ggaagtggaa cagcaaccat      3660
     ccggaagttt tacaggaaat accttcccat ctacgagatg atcgcgcggt tctcgatctg      3720
     gacgagaagg ctacagtgaa gacattaggt ctcacctggg aaccgactac agatacgttg      3780
     agaatcaagg ttccggactg gaagcctgaa gcggtggtca ctcatcgtgt agttctttca      3840
     gaagtcgcaa aactatttga cccatacggt cttgtaggtc cagtaatagt tctcggaaaa      3900
     ttatttctgc aagaactctg gaaagcgagg tattcatggg atgagctgtt aaacgaagat      3960
     ctgcaatcgc gttggttgga gttcagaagc aatcttagcg aactagtttc aatatctgta      4020
     ccacgatgga tcgctttcgg aagagacgta atatcatgtg aaatccatgg gtttagtgat      4080
     gcaagcgaga aggcctacgg agctacaatc tacctccggt gcgtgagcat gaacggggaa      4140
     ataaccgtca atttggtgat ggctaagtca aaggttgcac ctttggaaga ccttagcaga      4200
     aggaaaaaga agcagtgtat acctcgtctg gagttatctg ctgcgttgct actagcccat      4260
     ctttacgaga ccgtttcgag tagtctgaaa atagcatcga ccgcattctt ttggacagat      4320
     tccactattg tgaaatgttg gatatcatcc catccctcaa ggtggcaagt cttcgtaggt      4380
     aatcgcgtgt cagaaataca acatgttacc gaaggaggtg tatggaatca cgtaccagga      4440
     attgaaaacc cggctgatat tatatcgaga ggagccacgc cggctgaaat agcaaataat      4500
     tcgctttggt ggaacgggcc tgaatggctc aagaaagatg ttggatattg gccgaagaat      4560
     atgcaagttc cagaacagca gttcgatgcg gtaacattgg aggaaagacc ccttgtgtca      4620
     gcagcactac aggttatgcc accaagtgaa gtgttcacgc ttcgttcatc cctaataaac      4680
     ttagtgcgcc tgaccagctg gatacgtcgt tttaccttca attgtcgaca aagggaccac      4740
     cagcaaagaa agaaaggaat gttaacagct gaggagcatg actccgcact gctagctttg      4800
     gtacgactag ctcaatcaga atgcttcgca ttggaattag cagacattgc tgccaagaaa      4860
     gaggtgaggc catcttcgaa gctgcgcaat ctacatcccg tgatgataga tggagtaatt      4920
     tgtgtcggtg gccggcttgg aaacgctcca gtttctctag gccgtagaca tccaatgatt      4980
     ctggacagac atcatccgct tacgaaactt attttgattg attatcatca tcgactgctg      5040
     cacggaggac cacagcttat gatagcttgc gttcgagaaa gattttggcc gttaagcgtt      5100
     agaagtcttg caaaaaaggt aatgcacgag tgtgtgaaat gctttagagc aaagccgagc      5160
     acccatgaac agctgatggg tgatctacct ctggagcgag tggcgccagc acctgccttc      5220
     cagcgtgttg gtgttgatta ttgtggcccc ttcgagctgc aacctgcaac ccggagagct      5280
     gcaccactga aatgctatct cagcattttt gtatgcttag tttgcaaagc ggcgcacgta      5340
     gagatcgtga tggatctaac cagcgaggct tttcttgctg ctctcaggag attcgttgca      5400
     aggcgtggaa gaccggagtt aatactctgc gacaatgctt ccaacttcgt aggagctcgt      5460
     agagaattgt acgagttaca tcgaatgttc caacaacagc agtttcagga gcgagtgtca      5520
     acggaggcag cacgagattt gattgagttc aaatttatcc cagcaaggtc accaaacttt      5580
     ggcggcctat gggaggcggc tgtgaagtcg ttaaaggggc acatgaagag agtgattggt      5640
     agcaagatgt tgaagattga cgaaatgcac accgttgtca cgcagatcga agcgtgcctg      5700
     aattcaaggc ctcttactcc gctgagcaac gaccccaggg atttggaagt tttaactcct      5760
     ggacactttc taatccaacg cccactcacc gcaatacctg aaccaaatct cagtgagtta      5820
     ccagagggta gacttagcag atggcaacga gttcaaaact acagccaaca aatctggaaa      5880
     tgttggtcaa cggactactt gtcgagttta caaattcgca acaagtggac aagacagaga      5940
     tcaaatttcg ccatcggaac catggttctt ttgaaggaag acaatattcc gccactaaag      6000
     tggaagctgg ggcgagtaac ggagctcttc ccgggtcctg acggcaacgt gagagtggta      6060
     accgtccgca cgaaggatgg atcattccgc agagcgattt cgaagatatg tattcttccc      6120
     ttgcaagatg ttgaacctaa tgctgaggag cagtaccctg gacaccaata agcatcatcg      6180
     cccccatttg gggcactttt ggcaccttgc ggtgtattcc cgccgctatt gccagggggc      6240
     tctcttcaag ttacgtattg tatttcctgt atatctggct acgaactgat ctgctctcca      6300
     ttgacagtca aactcagcta cgtgtatgcc tggatatgct tcgctcatct ctaaaattat      6360
     tcaacagcat tctacgcccc cattgggggc atccgttggc tatatcgtgg cattcttgcc      6420
     acatctgccg agggggccaa cgtctaagtt atgtttacta tattaaacgt agaatttcgg      6480
     atccaaagcg ctattgttct ttagcagata cggatccacc cacggtacat caaattgtkc      6540
     atccctgcga tcgtcgaaga tcaactcagc taagtatggc cccatatggg gcacaattgg      6600
     cggttacgac acaccaggtc gtttttgcca ggggccgcac tagaagttat gtcattttca      6660
     attagtatca cttcggaaac caatcgattt cmcttccgcc agaactaact ccaagactac      6720
     agtcatcaac gctcgtccaa gctgcactct cctatggatc gaactcaaac aactacagct      6780
     aagtatggcc ccgaaagggg cacaattggt agcaagcggt aattaccgca ttcgccaggg      6840
     gccgacttaa aagttacgtg cataaagccc aaattctttt cggatcccaa tcgattctcc      6900
     ttttcggcag ataactctct acgacgacat cagatccaat acagcagcat gttcagctma      6960
     gtattctacg cccccatagg ggcacacttt ggcacgaatg gagaatccgt tatcgccagg      7020
     gggccacaga taagttatgt ttctccaatg ttgaagttgt tccagaatca agccatctca      7080
     ttctccaaca gagaccggga ttaattccaa tgacgaagtc atgctacaac atctagtgga      7140
     gacgccgaaa aaaaaaaaaa aaaaaaaatg aatgggaatc tgttgaagtc atcgccttgg      7200
     tcagcttaaa ggacggtcag ccccagccag catggaccaa caaggagttt caatttaaga      7260
     tgagtgcagg actggcgaga ttgttgaagt gactggatag gatatgttta ttagtttgaa      7320
     tagtttattt tgtagttata gttacgttga attgagtgaa ctcaaggtgg ccggta          7376
//
ID   BEL-755_AA-LTR repbase;    DNA;    INV; 365 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-755_AA-I;
KW   BEL-755_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-365
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-365
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 579-579 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 365 BP; 105 A; 70 C; 90 G; 100 T; 0 other;
     tgtttagatt tgaattattt ttacccgtca ctgtagatac caatcagttg gtctaaagag        60
     tgaccgcatc ggtgtaggta tacatttaag ttatacacaa gagagatacc aggtaaaggg       120
     tttgggttgt gctctcacag catgaatcga agtcagcaaa gctaagagag ttcagttaaa       180
     tctcgaccac cgacggtatc ggtaacgatc ggaggatcgt cgcgttagtc aaatacagtc       240
     catttaggtt gaacaaaggg ttcagtaaac taccctagtg attgtatcac aagtgttctt       300
     gcgcgttata cttaaacgtc gattcgcggg tgattcgcgg aagtgcgaac cgggagtatc       360
     ccaca                                                                   365
//
ID   BEL-757_AA-I repbase;    DNA;    INV; 7179 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-757_;
KW   BEL-757_AA-I; BEL-757_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7179
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7179
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 627-627 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..6148
FT                 /product="BEL-757_AA-I_1p"
FT                 /translation="MSDLKELKSQQRQIRSTFEGVKQFIAKFKRDRHEAQI
FT                 DTRVEILEEAMKKFYGLRRKIEALTEEADEKELLATKGDPEEMKANLEALV
FT                 EKRQLEHSIIIQQAEDSYCELKSTLQLLRGKPPSEGSSGPSVSSQGGSAAL
FT                 STVKLPEIRLPSFNGNIRDWVTFRDMFRSLIHRNTQLTDIDKFTYLRSSLA
FT                 GEALQEVERIEITAANYLIAWQQLQKRYENKKLIVKSHIDALFAVEPLKRE
FT                 SYEALCHLISEYDRNLQMLDKIGEDTSGWSTILVYMVCSRLDSATLRIWET
FT                 HHASTEVPVYEELMEFLRKHCAILQSIAPAKSAQTESKKPKFTVSHAQTSI
FT                 PANRCPFCSEEMHSAFKCQKFMKMKIPERYEKVKRHGLCLNCLSSSHMVRA
FT                 CTAGVCRHCQRKHHSLLHSGGGAGGKPAIPAAQNDSSGPQIQNRSQTNTQQ
FT                 PQTQAQNQPTLTQTPSTGSFPVANISSHPPPPATTNRTLSSNSLPATIHTS
FT                 SRQVLLSTALVRVSDRYGNTQLARVLLDSCSEYCFVTTSLSQKLRLTETSS
FT                 YLSVAGIGGSVVKSTKKVDATIAARSFHISSYSANIQLHVLPKLTSELPIH
FT                 SVNIEKLAIPSEIILADPNFCEPGPIDIILGAEYYYDFLLEDRKKLFEDGP
FT                 TLQSTVFGWVVSGRVPGNAIKIPSTITHSYSTVELRDLVAKFWELESCNSS
FT                 STMSVEETVCEELFDKTTVRDGDGRFVVTLPKREHIINQLGDSKLTALKRL
FT                 HGMERRFIGNDMLRTLYIDFVQEYLSMNHMREVDVSEDDKLSYYLPHHAVL
FT                 KPESTTTKLRVVFDASCRTSTGTSLNDGLMVGPVVQDDLLAIILRFRCWKF
FT                 VLVADIAKMYRMVKVAEADQPLQRILWRDSPDQPVKTYELTTVTYGTASAP
FT                 YLATKCLQRLATEGEASHPAAAKVVRKDFYVDDLLTGTDSLDDGKALAIDL
FT                 ISLTNSAGFMLRKWSSNSSELLATIPAELRDERSTLELDSSTSIVKTLGLT
FT                 WEPAKDIFKFAVPCWNSEPTITKRVVLSDTARIFDPLGLISPVTVQAKIFL
FT                 QQLWKQKSDWDEALPENFQAVWNEFRRNAGALETLSVPRWTGFSSSLVSVE
FT                 LHGFCDASEAAYGACLYLRCESSDGSVTVRLITSKSRVAPLEDLSRKKKKQ
FT                 SIPRLELSSALLLSHLFEKFRNSVHISANAYFWTDSMIVKCWLSSLPSRWQ
FT                 MFVANRVSEIQHITKSGVWNHVAGADNPADIVSRGMTPAQLTYQSVWFEGP
FT                 LWLRQDRTTWPKSTAVQPELNKALLEEKPATSFPAQIKPPSSIFLLRSSFP
FT                 ILVRLVAWIRRFAHNAIPRNRVCKRSGNLSSSELKEAELQLVRLSQSESFP
FT                 AEIAALSKNQPISPSSKLLTANPFLAESVLRVGGRLHNAPIAESRKHPLIL
FT                 HHQHPLTQLIMDHYHRKLFHAGQQLLISSIREKFWPTRARDVARRTIHRCV
FT                 PCFRSKPKVHEQLMADLPSVRVTPGTVFQKVGIDLCGPFYIRYPGRRSAPI
FT                 KTFVCIFVCLATKAVHMEIVADLSTQAFLAAFKRFVAIRGKPQLVMCDNAT
FT                 NFVGANKELEVLRRQLNHQQDVLVNAAVEDGIDFKFIPPRSPNFGGLWEAA
FT                 VKSFKGHFRKTIGDRTLTYDELHTVVHQVAAILNSRPLTPLSNDPADFTAL
FT                 TPGHFLVGRPLTAVPEPDLQEVPENRLSQWQRTQHFVQQLWRKWKSQYLSD
FT                 LHNRTKWTRKRDNLHVGTLVLVKEDNLPPQKWRLGRVSEVFNGDDGNVRVI
FT                 TVRTQDGVFRRGISKICILPIRDNDQESQSEKQ"
XX
SQ   Sequence 7179 BP; 1837 A; 1875 C; 1766 G; 1701 T; 0 other;
     tttggtcctt cgagccggat taccgttgga cgatcgatcg tgaactattg aactgtgaac        60
     aatcaaaccg ccgtctgcga ttgaaaagtg attgcgagga caattgtggc cattgttggc       120
     aaagcttcaa tcgcctgtgt gaattgtggc tcaaaagagc gaagaaacag aaattggtgc       180
     tgttcctgta cccggttgat gatatcttca tcgaacgtaa agtgctctgc tcaacccctg       240
     ggcggtaacc gatcgacgct gagctgcgga ttgagagtgc tggcgatcaa cgacttctgc       300
     ttggatccag gatcagcagt gacaagggaa gtagaattgc ttaagatttg tggtgcgcca       360
     tgcatgaggc acatcagatg agataatatt gatggacatc caaataaaat ggtggttgaa       420
     aactagattt catttgcatg cgaatttgta tccctgagtt cagttgacgg ttggtctttg       480
     gttctgctgg cttttccgag gctcgttatt tcacctggtt ggctcccctc gttgttgtca       540
     agttggtcgg tctgttctca gtcaatttgt gggccgtcga gtcgagtcgc gaatcgcggt       600
     tgtcgagtga tagtgagtgc aagtgaactt gaacattgtg cggtttgctt gacagactac       660
     agtgcggtgc aaataatagg gaacagttga acttttttga atttttcaat aagtggttcg       720
     agagtgaatt ttcaaaatga gtgatctgaa ggagttgaag tcgcaacagc gacaaattcg       780
     gagcacgttt gagggagtga agcagtttat cgcgaaattc aagcgcgaca ggcatgaggc       840
     tcaaatcgac acccgagtgg aaatcctgga ggaagcaatg aagaagtttt acggtctgcg       900
     tcggaagatc gaagcgctca cggaggaagc tgatgagaag gagttgctgg ctaccaaggg       960
     tgatccagaa gagatgaagg caaacctgga agcactcgtt gaaaagcggc agttagaaca      1020
     tagcatcatc atccagcaag cagaagacag ttattgtgag ctgaagtcaa cgctacagct      1080
     tctacgtggc aaaccgccct cagaaggttc ctctggtcca tctgttagtt cccaaggagg      1140
     ttcagcggct ctgtcaacag tcaagctacc ggagattcgg ttacctagct tcaatggaaa      1200
     catccgtgac tgggtgacat ttcgggatat gtttaggagt ctgatccacc gcaacaccca      1260
     gctgactgat atcgacaagt tcacctatct ccgatcttca ctagcaggag aagctcttca      1320
     agaggttgaa cggatagaga taacagcggc gaattatctc atcgcctggc agcaactgca      1380
     gaagcggtat gagaataaaa aactcatcgt caaatctcat atcgatgcac ttttcgcagt      1440
     tgagccgttg aaacgggaga gttacgaggc attgtgtcat ctcattagcg agtacgaccg      1500
     taatctccaa atgctggaca aaatcggcga agacacctcc ggatggagta ccattctcgt      1560
     ctacatggtg tgctctagac tggattcagc aaccctccga atctgggaaa cgcatcatgc      1620
     ctcaacggag gtgccagtgt acgaagagct gatggagttc ctgcgcaagc attgtgctat      1680
     cctgcagtcg atagcaccag cgaagtccgc tcaaaccgag tcgaagaagc ccaagttcac      1740
     cgtgagccac gctcagacat ccattccagc caatcggtgt cccttttgct cagaagagat      1800
     gcattcagcg tttaagtgtc agaagttcat gaagatgaag attcctgagc ggtacgagaa      1860
     agtgaaacgg cacggactgt gcctgaattg tttgtcttcg tcacacatgg ttagagcgtg      1920
     tacggccggc gtctgccgac actgccaaag gaagcatcat tctctcctcc actctggagg      1980
     tggtgccggt ggaaaacctg ccattcccgc cgctcaaaac gattcctccg gcccacagat      2040
     tcagaaccga tcacagacga acacgcagca accacagaca caagcccaga accaaccaac      2100
     actgactcag acacctagca cgggatcatt tcccgtcgca aacataagtt cgcacccccc      2160
     accaccagcc accacaaatc gcacactttc aagcaattcc ctacccgcca ccatacacac      2220
     ttcttctcgc caagttttgt tgtcgacagc gctagttcgc gtgtcagaca gatacggaaa      2280
     cactcaacta gctcgagtac tcctcgattc ttgctcggaa tactgtttcg tcacaacaag      2340
     tctttctcaa aaactgagac taactgaaac atccagctac ctatccgtgg ccggaatagg      2400
     aggctctgtt gtgaaatcca ccaagaaggt ggacgccact atagctgcgc ggtcgttcca      2460
     catttcatca tactctgcga acatccagct tcacgtcctg ccgaaactta cctctgagtt      2520
     gccgattcat tccgtcaaca tcgagaagct agctattcct agtgaaatca tcctggcaga      2580
     tcctaatttc tgcgaaccag gcccaatcga cattatcctc ggcgcagaat actactacga      2640
     ctttctcctg gaagatagga agaaactgtt cgaagatgga ccaacgctgc aaagcacagt      2700
     cttcggatgg gttgtatctg gtcgagttcc cgggaacgcc atcaagattc cctctacgat      2760
     tacccactca tattccacgg ttgagctgcg agatctcgtc gctaagttct gggagttgga      2820
     gtcctgcaac agttccagta cgatgtcggt ggaagaaaca gtgtgcgagg agttgttcga      2880
     caagacgaca gtacgtgatg gagatggaag atttgtagtc acccttccca aaagggagca      2940
     tatcatcaat caattgggcg actccaagct cacggcgctg aagagacttc acgggatgga      3000
     gagacgtttc atcggcaacg acatgttgcg aactctttac atcgacttcg tccaagaata      3060
     tttgtccatg aaccacatgc gcgaggttga cgttagtgaa gatgacaagc tgtcctacta      3120
     tctcccacat cacgccgttc tcaaacccga aagcacgaca acaaagctac gtgttgtgtt      3180
     cgacgcctcc tgtcgaacgt cgacgggaac atccttgaac gacggattaa tggtaggacc      3240
     tgtggtgcaa gatgacttgc tcgccatcat tctgcgtttt cgctgttgga agttcgtgtt      3300
     agttgcggat atcgctaaaa tgtaccgaat ggtcaaggta gcagaagccg atcagcccct      3360
     ccagcggatt ctatggcgag attcgcctga ccagcctgtc aagacgtacg aattgacaac      3420
     ggtcacgtac ggcacggcct cagcaccata tcttgcaacc aagtgcctcc aacggctagc      3480
     aacggaagga gaagcgtcgc acccggcagc tgcgaaagtc gtccgcaagg atttttacgt      3540
     tgacgatttg ttgactggta ccgacagcct cgacgatggg aaagcactcg ccatagatct      3600
     aatttcgctg acgaactcag caggcttcat gttgcgcaag tggagctcga acagttccga      3660
     gctgttggcc acgattccag cagagcttcg agacgaacgc tccacccttg aactcgattc      3720
     gtcaacgtcg attgttaaaa ctcttgggct cacttgggaa cctgctaagg acattttcaa      3780
     gttcgccgta ccatgctgga attctgagcc aaccatcacc aagcgggttg ttctctccga      3840
     caccgcccgc atcttcgatc ctctgggcct catcagtccg gttactgtcc aagcgaaaat      3900
     atttcttcag cagttgtgga agcagaagtc agattgggat gaggctttac ctgaaaactt      3960
     ccaggccgtc tggaacgagt ttcgtcggaa tgctggtgca ctcgagactc tctcggttcc      4020
     aagatggaca ggcttcagta gcagcttagt atcggtggag ctgcatggat tctgtgatgc      4080
     atcggaggca gcatatggtg cttgcctgta tctgcggtgc gaatcatcgg atgggtcagt      4140
     taccgtccgc ctcatcacgt cgaaatcgcg cgtggcgccg ctggaggacc tctcccgcaa      4200
     aaagaagaag cagtcgatcc cgcgactgga gctctcatcg gctttacttc tgagtcatct      4260
     cttcgagaaa ttccggaata gcgtccacat ttccgccaat gcctacttct ggacggactc      4320
     catgatagtc aagtgttggc tgtcgtcact tccgtcacgt tggcaaatgt tcgtagccaa      4380
     cagagtatca gaaatccagc acattactaa gtctggagtc tggaatcacg tcgctggtgc      4440
     tgacaatccg gcggacatcg tatcccgcgg gatgacacct gcacagttga catatcagtc      4500
     ggtttggttc gaaggtccat tgtggctacg ccaagatcga accacttggc ccaagtcaac      4560
     tgctgttcaa ccagagttga acaaggcatt gctggaggaa aagccagcaa catcatttcc      4620
     cgctcaaatc aagccaccta gttcgatatt tttgctccgg tcatcgtttc cgatactagt      4680
     ccgactcgtt gcatggattc gtcggttcgc acacaacgcc atcccgagaa accgtgtctg      4740
     caagcgcagt ggtaatctgt catcatcgga actcaaagaa gccgaactac agttagtccg      4800
     gttgtcccag tcggaaagct ttccggcgga aatagctgcg ttgtctaaaa atcagcctat      4860
     cagtccatcg tcgaagctcc ttacagcgaa tcctttcttg gccgaaagcg tacttcgtgt      4920
     cggcggccgg ctgcataatg ctcccatagc agaaagccgc aagcatccgc tgattcttca      4980
     tcatcaacat ccgctgacgc agctgataat ggaccactac caccgaaaac tgttccacgc      5040
     cggacagcaa ctcttgatca gttccatcag agagaagttt tggccaacac gtgcccgaga      5100
     cgtcgcccgt aggaccatcc atcgttgtgt tccctgcttc aggagtaaac caaaggtcca      5160
     cgagcagttg atggccgatt taccgtccgt ccgggttaca cccggaactg ttttccagaa      5220
     agtaggaatc gacttatgtg gaccgttcta catccgatat ccaggacgac gaagtgcacc      5280
     gataaaaact tttgtgtgta ttttcgtctg tttggcaacc aaggccgttc atatggagat      5340
     cgtcgccgac ctatcaactc aagctttctt ggcggccttc aaacggttcg tcgcaatccg      5400
     tggtaagcca caactggtca tgtgtgacaa cgcgaccaat ttcgtaggag cgaacaagga      5460
     gcttgaagta cttcgtcggc agctgaatca tcagcaagac gtactggtca atgcagcagt      5520
     tgaagatgga atcgacttca agttcatccc gcctcgctct ccgaatttcg gtggactgtg      5580
     ggaggcggca gtgaaatcct ttaaaggcca cttccgtaag actatcggtg acagaacatt      5640
     gacgtacgac gagctacaca ccgttgttca tcaagttgca gcgatcctaa actctaggcc      5700
     attgacaccg ctcagcaacg accccgccga cttcacggcc ctcacaccag gccactttct      5760
     agttggcaga cctctcacgg ccgtcccaga gccggaccta caagaggttc cggaaaatcg      5820
     tctgtcccag tggcaacgca ctcagcattt cgtccagcag ctatggagaa agtggaagtc      5880
     gcagtacctc tcggatctcc acaatcggac gaagtggacc cgaaaacgcg ataatctcca      5940
     cgttggaact ttggtcctcg tgaaggagga caatctgcca ccacaaaagt ggcgattggg      6000
     cagagtttcc gaagtattca acggtgacga cggaaacgtc cgcgtcataa ccgtccgcac      6060
     gcaggacggc gtctttcgaa ggggcatttc gaaaatttgc atccttccca tccgggacaa      6120
     cgatcaagag tcccaatcag aaaagcagta gtttttcgag cgaggtgcct tcgcaccacg      6180
     gagggtcctc atagtggccc tccggttcca gttaagtagt tgtataataa tgtaattcaa      6240
     aaaattcaag gaatgtttat cccccatagc tgcatcgacg tcccggtcac cgggatagtc      6300
     atcatcatcg agccgtctcc aaccattggc ctcccagtcc gccaaccgtc cggtctgcat      6360
     gaagactgtc ctgtgtcgtc gcttgtccgt ccgaggtttt ggtgcatgat tttgccttcc      6420
     tattgttcaa attcttcgca atcacagtaa cgccacacat cgtcccctga gcgatgggcc      6480
     cgtcgctcga gtcgctggtt ccatccgatc ggtcatcaga cgaattgatc actcgtcagg      6540
     aagacctccg tcaaccgtga accggcaacc tagatgttca gcgtcagcat gtgatcatcg      6600
     atttcgtctg ccaaactcgg cagcatcgcg gtgccatggg cacccgcgga ggcccggacg      6660
     caagggcctc cgcaccaggc aagttatgtt aaaattgttc aattcctcgt aaaaagcttc      6720
     gtatattttg tagaatcgtg ctctctcacc aggcccggag gcctccatca gcgatctcct      6780
     gagcgcatac ggccaggaca gacaaccatt gaagtgtgtt ccactaccat ggccaatggc      6840
     agacgaccgg agatggatcg tcatccaccc aactccagct ttcccagcta aagctgctca      6900
     tcatcttgca tgcttggtgc atccactgtc gagcaaccga tgcagtctat catcactacg      6960
     gtcggcaatc gaaagttggc caaggtcact aagcagcaca gcagtatcaa aatatcagtg      7020
     tctccaatag ttgaaccaga aaatttgttt acatcaagag atataataag agtagtaatc      7080
     attgaaaagg acttaggtag cgttaggtat actacaccag attgcaaaat ttagttacat      7140
     ttttagtttg aaatctatgc gatttcaagg cggccggca                             7179
//
ID   BEL-757_AA-LTR repbase;    DNA;    INV; 397 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 24.04, Created)
DT   29-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-757_AA-I;
KW   BEL-757_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-397
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-397
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 580-580 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 397 BP; 105 A; 96 C; 74 G; 122 T; 0 other;
     tgtttgaact cagaaatgcc ggtctgactg gcaacaccca gatacgttcc acatgcgtaa        60
     attattcatc ccactttttc tcacgcattt atctcctatc tcttatcgaa tatagtagtt       120
     agatgtagat atcaccgatc gcaatcgatc ggttatgatc atgcctatat tcaccactgg       180
     ccttatcgta tcgcctctat acgaaaggta gtttttcagt tttactcgat ccgcgagccg       240
     tctcgcttcg tacagaattt gcacagtgaa caaatccgtc gagcaataaa gtgctgtgaa       300
     taaatcggtc ttttttgaat tgcaattctg cgtcgcgagt ttcaagtgca cgtccgaaaa       360
     catcttttgc caacggtccc ggtaaagtgc ataaaca                                397
//
ID   BEL-758_AA-I repbase;    DNA;    INV; 7004 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   20-JAN-2021 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-758_AA-I;
KW   BEL-758_AA-LTR; BEL-758_.
XX
NM   BEL-758_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7004
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7004
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other. The sequence 6561-6418 is an insertion of Zator (~81%
CC   identical to Zator-N4_AAe).
XX
FH   Key           Location/Qualifiers
FT   CDS           834..6155
FT                 /product="BEL-758_AA-I_1p"
FT                 /translation="MALQLQKATLLSRRATMITALGRAEAFLDSFDEQRDG
FT                 GQVPIRLEYLNSMWTTLEEVQGQLEDIEDSDEGRQANATVRAEFEPRLFSI
FT                 KADLISKLPVVTQQARIPETSSHGSTLSGLKLPTISLPEFDGDYMQWLGFH
FT                 DTFLALIHSNAEVPSIQKFHYLRAALRGEASQLIESIAISSANYNLAWQTL
FT                 VDRYANDYLLKKRHLQALFDIQSANKETAASLHALVDEFQRHTKVLGQLGE
FT                 PTGSWSSILEHLLCTKLPNDTLKAWEDHASTADDPNYDCLIEFLQRRMRVL
FT                 ESMLVNQHQPASSSNGSTHTPKRQSHFRVSSCASTSGSSNKCPACNQEHLL
FT                 MRCAKFNRFSNTERQQFVSNKRLCHNCLKGDHIARNCPSNYRCKHCSKRHH
FT                 SMLHSSDNSRTISEPSSSRTSMPTQAIQSAVSPVAEPIIQSSFAASEVVPR
FT                 VVVSASAPQPREDVFLLTVLVKVVDAYGQDHFARALLDSASQPNLITDRFA
FT                 RRLHLKRSSVNVTIQGAGNLSKRVRESIFAQIKSRNDSFECSVEFLLMDTV
FT                 TADLPAQDISVKDWRIPENLTLADPMFNKSQQIDMVLGAKHFHSFFPSTAR
FT                 LQLADNLPILVDSVFGWVVTGSANMAHHAQQSSTPSVVAVSMLTLEESMER
FT                 FWKTEELTISDGYSIEERRCEDLYQSTTCRDQTGRYIVRLPRKPDFDAMLG
FT                 ESKTSALRRLDQLERRLDRDQKLKEDYHDFMKEYLSLGHMQLVETDDGNHS
FT                 HTYYLPHHPVIKEDSTTTKVRVVFDGSARTSTGFSLNEALCVGPVVQEDLL
FT                 TIILRFLTYPVALVGDIAKMYRQVLLHPDDCSLQRILFRFSKDTPVQTYEL
FT                 RTVTYGLSPSSYLATRTLQQLAADEGDAYPLAGPSVPKNFYVDDYVGGANS
FT                 VEEAIQLRGELSDLLEKGGFVLRKWASNHLEVLQGLEDDQIGTQSSLKFCP
FT                 NESIKALGIRWEPETDQLCFDSHIQPRDDPPTKRSILSDIARLFDPLGLVA
FT                 PVVVTAKILMQELWSLSCDWDEPVPHNVRLKWENFRSELPKIASYRIDRYA
FT                 FLLESMVELHTFADASTSAYGACTYVRCENALGTVKIRLLASKSKVAPLKR
FT                 LTIARLELCACVLAAHLYHRIKQSINMHVSASYFWSDSAVCLYWLRAPPSS
FT                 WKTFVANRVSEVQHYTHGGHWNHIPGTENPADLVSRGMSVEDFVESKMWKH
FT                 GPSWLSHPKQLWPNSSPPDVTEDTLEMKNVVVSVQTSPRINPWFLRWSSYS
FT                 RLLHTIAYCLRFAEKTRSKARTLPLASPLEDESNKKSLTVEELAKANTFLV
FT                 RLAQLDSFKEEIKTLQRGNPMPKNSPVRRLAPFIDPEGVLRVGGRLNLSQL
FT                 PYQSKHPALLPRNHPLTQLIGEDYHRKLVHGGGRLLLSTIREKYWPLNGRR
FT                 LVHSIVRNCFRCARYHPSPAQQQIGQLPAARVIPSRPFSNTGVDYAGPLYV
FT                 KPIHKRAPPAKAYLCVFICFATKAVHLELVGDLSTQGFLAALRRFISRRGI
FT                 PAHIYSDNGKNFEGAKRELEELFARFKSDNEQSVIAAACAEQGIRWHLTPP
FT                 KAPHFGGLWEAAVKTAKRHLFRQLGNTRLTFEAYYTILHQIEAAMNSRPLL
FT                 PMSDDPNDLAALTPAHFLIGSSLQALPDPDLQQPPTNTFDHLRKLQQHVQK
FT                 FWKHWRAEYLQEMMKATKLSARNDEIQPGRMVIVVDEMVPTTRWPLARITD
FT                 VHPGSDKLTRVVSLRTAKGIIIRPITKICLLPRLEPFASDDTQPVDPTIGQ
FT                 EEC"
XX
SQ   Sequence 7004 BP; 1817 A; 1804 C; 1560 G; 1823 T; 0 other;
     ataaaattgg tgccgtgacc aggataccga cgccataacg acgtagatcg gaatcacgtg        60
     ggacgatcca ctgggcgctg ccatattgtt cgcgccatac tggctcaagg attctattga       120
     ttcaaggctc gaattaatcg ggcatcaggt aattacctgt ccccatcatt tataaaggtc       180
     cgcaggtgcc ctttagattc ccgtgtcttt tctttgcatg cgattttctt cgatttcgac       240
     tgccactcgg cttgaagcac atcaccccgg aagccgcgtc tgtgaagata ttccgtctgg       300
     ccttttcgtg ctacccaatc aacgccattg cgccgtggcc gtccagcgcc attgtagtga       360
     ggtagaagct gcaaccgaag ccacgccatc ccgcctttga atctcgagca ttcagtggca       420
     gtctagaacc accagcgttc aaaccagtcg atcttcgtca tcatctcaac attcgttcgc       480
     gttgtaccgg ctccgcacgt gcctgcgatt agccgaaagt gcctcaagcg taaatttccg       540
     gattttttcg agcaacaaca ctacgtgcgg caatttgttg gattttcatc gcttttcgtc       600
     gtcatcgatt tcaacctagg ccataattgg tacatctacc ctacgcccgc agtgcattca       660
     cacgtttcgg cttgcaacat ttgttattca aggcacttat ttgccttgga attggtgagt       720
     accattccaa gtgatcatta tctctctctc cgggcctacc gtggtctttt gttttttggc       780
     agaaccgtca tcagccattg cgtagtgtca atcccactat tccaaccatc caaatggcac       840
     ttcagctgca gaaagccacc ctgctatccc gcagggccac gatgatcacc gctctgggtc       900
     gggcagaggc atttctggac tccttcgacg agcaacgtga tggaggacaa gtaccaataa       960
     ggctggagta cctcaacagc atgtggacaa ctctggagga ggtgcagggg cagctggaag      1020
     acattgagga cagtgatgaa ggtaggcaag ctaacgctac tgttcgtgcc gaatttgagc      1080
     ctcggctatt ttcaataaaa gccgatttga tttccaaact tcctgttgtt actcaacaag      1140
     ctcgcatccc tgaaacttct tcgcatggtt ccactctttc tggattaaaa cttccaacga      1200
     tctctcttcc ggaatttgat ggggattata tgcagtggct agggtttcac gatacgttct      1260
     tggcattgat acattccaac gcagaggttc cctcaatcca aaaattccat tacctgcgag      1320
     cagctctgag gggtgaagca tcacagctga ttgagtccat cgctatcagc tcagcgaact      1380
     acaatctggc atggcaaact ttagtagaca gatacgccaa tgattacctg ttaaagaagc      1440
     gacatcttca ggcactattc gatatccaat cggcgaataa ggaaactgcg gcatcattgc      1500
     acgcgcttgt ggatgaattc cagcgtcaca cgaaggtgtt gggccagcta ggagaaccga      1560
     cgggctcttg gagcagcatc ctggagcatc ttctgtgcac gaaacttcct aacgatacac      1620
     taaaagcctg ggaagatcat gcgtcaaccg ccgacgatcc aaattacgat tgcttaattg      1680
     aatttctgca gcgtcgcatg cgagtgttgg aatccatgtt agtgaatcag catcagccag      1740
     catcttcatc aaatgggtcc actcatactc ccaaacggca gtcccacttc cgggtatcat      1800
     catgtgcatc cacttccggc tccagcaaca aatgtccggc ttgcaaccaa gagcatctac      1860
     tgatgagatg tgcaaaattc aaccgttttt caaacaccga gcgtcaacaa ttcgtttcga      1920
     acaagcgcct gtgccataac tgcctcaagg gtgaccacat tgctcgaaac tgcccttcga      1980
     actacaggtg caagcattgc agcaagcgtc accattctat gctccactcc agcgacaatt      2040
     cccggacaat tagcgaacca tcgtcctctc gtacgtccat gccgactcaa gctattcaat      2100
     ctgctgtttc ccccgtagca gaaccaatta ttcagtccag ctttgctgca tccgaagttg      2160
     ttcccagggt cgttgttagt gcctctgctc cacaaccacg tgaggacgtc ttcctgttaa      2220
     cagtgttagt caaagttgtc gacgcttacg gtcaggatca tttcgctcgt gcattgcttg      2280
     acagtgcttc tcaaccgaat cttattaccg atcgctttgc acgcaggttg catttgaaaa      2340
     ggagttccgt gaacgtgacc atccagggtg ccggtaatct ttcaaaaaga gtacgcgaat      2400
     cgatttttgc acaaattaaa tcgagaaacg acagtttcga atgcagcgtg gagtttcttc      2460
     taatggacac ggtgactgca gatctcccgg cacaggatat ctccgtcaaa gactggcgga      2520
     ttccagagaa tttaacgttg gccgatccca tgttcaacaa aagtcagcaa attgatatgg      2580
     ttcttggcgc caaacacttc cattcattct tcccaagtac tgctcgcctt cagttggctg      2640
     ataatcttcc gattctggta gacagtgttt tcggttgggt cgttacaggg tcagcaaaca      2700
     tggctcatca tgctcagcaa tcttccactc ctagcgtcgt cgcagtctcc atgttaacgc      2760
     tcgaggaaag catggaaagg ttttggaaga ccgaagagct cacaatcagt gatggctact      2820
     ctattgaaga acgccgatgc gaggatttgt atcaatccac cacatgccgg gatcagaccg      2880
     gccggtatat cgtccgactg ccacgaaagc ctgattttga tgcgatgtta ggagaatcaa      2940
     agaccagtgc tttgcggcgt ctcgaccaac tcgagcggcg gctcgatcgg gaccagaaat      3000
     tgaaggagga ctaccacgat ttcatgaaag agtacctctc cctcggccat atgcaattgg      3060
     ttgagacgga tgacggaaat cactcccaca catactattt gccccaccac cccgtgataa      3120
     aggaagatag tacgaccacg aaggtgcgag tcgtattcga cggctcggcc cgtacatcga      3180
     ccggcttctc gctcaatgaa gccctctgcg tgggtccagt ggtccaagaa gaccttctca      3240
     ccattattct tcgttttctg acctaccccg ttgctctagt aggcgatata gcgaagatgt      3300
     atcggcaagt gttgctgcat ccagatgatt gttctcttca gcgcattctt tttcgcttct      3360
     ccaaagacac tcccgtccaa acatacgaac tgcgcaccgt tacctatggt ttgtcaccat      3420
     cttcgtacct tgcgacacgt actcttcaac aactcgcagc agatgaaggc gacgcatacc      3480
     cgctagccgg tccgtccgtt cccaagaact tttacgtcga cgactatgtt ggtggagcaa      3540
     attctgttga ggaagctatc cagcttcggg gggagctctc cgatttgttg gagaaaggcg      3600
     gtttcgtttt gaggaaatgg gcctcaaacc acttagaagt attgcaagga cttgaagatg      3660
     atcagattgg gacccaatca agtttgaaat tctgtccaaa cgagtctata aaggcattgg      3720
     gaatccgttg ggagccagag actgatcaac tttgctttga ttcccatatt cagccacgag      3780
     acgaccctcc aacaaagcgg tcgatcctct ccgacattgc acgacttttt gacccacttg      3840
     gcttagttgc acctgtcgtt gtaacagcga aaatcttgat gcaagaactg tggtctctct      3900
     cttgcgactg ggatgagccg gttccgcaca acgttcggct taaatgggaa aacttcagaa      3960
     gcgagctacc gaaaattgcg tcttaccgta tcgaccgtta tgcatttctt ctagagagta      4020
     tggtggagct acatacattt gccgacgctt caacgtccgc ttacggagct tgcacatatg      4080
     ttcgatgtga aaacgccctg ggaaccgtaa aaattcgact actggcgtct aagagcaaag      4140
     ttgcaccgct gaaaaggcta accatagcgc gccttgaatt gtgtgcctgt gtcctagctg      4200
     cacatttata ccatcgcatc aagcaatcaa tcaacatgca cgtgtccgcc tcatactttt      4260
     ggtcggactc agctgtctgc ttgtactggc ttcgcgcacc acccagctcc tggaaaactt      4320
     ttgttgccaa cagggtttcg gaggtacaac actacaccca cggtggtcat tggaatcaca      4380
     tacctggtac agagaaccca gccgatctgg tttcccgcgg catgtcggtc gaagacttcg      4440
     ttgaaagtaa gatgtggaaa cacggtccat catggttgtc acacccgaaa caactttggc      4500
     cgaattcaag cccacccgac gtgactgaag ataccctgga gatgaaaaac gtagttgtat      4560
     ctgttcaaac ttcacctcgc atcaacccat ggttccttcg ttggtcatcg tatagtcgat      4620
     tactgcacac catcgcttat tgcttacgct ttgcagaaaa aactcgatca aaggctagaa      4680
     ccctgccact tgcatcccct ttagaggatg aatccaataa aaagtctctt accgtcgaag      4740
     aacttgctaa agccaacact tttctagtac ggttagctca actggattca ttcaaagaag      4800
     aaatcaagac tctgcagcga ggaaacccta tgccaaagaa ctcacctgtg cgtcgcctag      4860
     ccccattcat tgacccagaa ggagtattgc gagtaggagg tcggctcaat ttatcccagc      4920
     ttccctacca atcgaaacac cctgccctcc tgccaaggaa ccatccattg actcagttga      4980
     ttggtgagga ttatcatcgc aaactggttc acggcggcgg gcgtcttcta ttatctacaa      5040
     tccgcgaaaa atattggcct cttaacggtc gccgtttggt ccatagcatt gttcgtaatt      5100
     gctttcgatg tgcccgctat catccgagtc cagctcaaca gcagattggt cagttgccag      5160
     cagcaagggt gataccaagt cgtccctttt ccaacacagg agtggattat gccggtccac      5220
     tttatgttaa gcccatccac aagcgtgctc cccccgcaaa agcttacctg tgtgtcttca      5280
     tatgcttcgc aaccaaagcc gttcacttag agttagtagg ggatctgtct acccaagggt      5340
     tcttagccgc cttacgacgt ttcatctcaa gacgtggaat ccctgcccat atatattcgg      5400
     ataatgggaa gaactttgaa ggagcaaaac gcgaactaga ggaactgttt gcgagattta      5460
     agagcgacaa cgagcaaagc gttattgctg ctgcctgtgc cgaacaaggc attaggtggc      5520
     acttgactcc tcccaaggca ccacatttcg gtggcctatg ggaagcggcg gtcaagactg      5580
     ccaaacgaca tttattccga caactgggca atacacgtct tacattcgaa gcatattata      5640
     caattcttca tcaaattgaa gccgcgatga actcacgtcc tcttctgcca atgtccgatg      5700
     acccaaacga ccttgctgca ttgacgccgg cacactttct aattggatca tcacttcaag      5760
     ccctgcccga cccagacctt cagcagccgc caacgaacac cttcgatcac cttcgaaagt      5820
     tgcagcagca tgttcaaaag ttttggaaac actggagggc ggagtatttg caggagatga      5880
     tgaaagccac gaaactatct gcgcgtaacg atgaaatcca gcccggacga atggtaatcg      5940
     tagtggacga aatggtgcca accacccgtt ggcctctggc tcgcatcacc gatgtgcatc      6000
     ctggaagtga taaattaacc cgtgttgtaa gtctacgcac cgccaaaggt atcatcattc      6060
     gaccaattac caagatctgt ttgctgccac gactggaacc gtttgcctcc gatgatacac      6120
     agccagttga tccaactatc ggacaggaag agtgctagaa tatctaccta aatcgagaag      6180
     aaaaacgaaa attgagttag agtaatactt accagtggaa tcagttattc gatgtttgtt      6240
     tttgtttaca tcatctattg agcattttgc accttattag actactgtgc agaacatatt      6300
     tgcacagtga acatttgcac acctcacaca tacatgtact cacattacag ttaagcagca      6360
     tgcttggata ctaaattttc tatccgatag acagcgacta aggtcaaggt gctgaaaggg      6420
     tttattctca aatttcataa cgccaaaatt gccctttttt gagacccacc acccttcact      6480
     ttttgtattt tttgtaataa ctgtaacatt tggggacagt tgcccacccc cttcagcgtt      6540
     gagaaattta tgaatgggtc caaagatctt ccattaggaa gaatatttaa tagccctgaa      6600
     tctgcgggaa acgaatctga taccgaagac gattttgatg atgatcatga ttctggatcc      6660
     agcaaacaat agattcttaa aggaaaaact tcccgatgag cctaacggct gctggatatt      6720
     ggttgccgtt cacgatttca aggaacattc atcaggaaaa gaagtctttt agtggggtgt      6780
     agctggcact acggagataa ttttttactc caatgctggt cgcttgatgc aatctctttg      6840
     actgctttga attattttga aacgtcataa acagctttca aagcatacgc ctgctgatgt      6900
     tagtgggtgt gcaaattgta tcttactctt gaacaatttc attagaatct aaaaattcgt      6960
     gcaacggtca atatgttgaa cataatcgtt caaggcggcg ggta                       7004
//
ID   BEL-758_AA-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   30-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-758_AA-I;
KW   BEL-758_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-518
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-518
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 599-599 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 518 BP; 128 A; 115 C; 131 G; 144 T; 0 other;
     tgttgggact ctggtcacac tgcgtgagaa atttgcttct cactcaatcg acggtgctaa        60
     cggtcattac gttagacgag ttatttcacg tttctggcaa cgcggtcggc acagctgatc       120
     gtgtcgaaga ccacccagca tactcggtag ttcgcctgct ctcattcgta atagacctgc       180
     aaatgaagaa agtcattaga gaagaaataa attgcatgtt caaggtttaa cttagttttt       240
     caataaagtg agcagtttgt tcaagtagaa agtggtgtgc cttaaaagtg gaagaaattg       300
     gctacctagt gcgtaactta ccgcgttcag tgtgctgttt cctgatcgtc ctgctgctgc       360
     tgttttcacc catcgacgat ttgctctgcc cgttaccacc cactcacact gcagtgattt       420
     tcggtgctgt tcaacgtagg gtggtgcgtc gatattggac tggcattccc gaggaagtgg       480
     aaatcagcgg agacacaacg taggggtaag ccggaaca                               518
//
ID   BEL-759_AA-I repbase;    DNA;    INV; 6801 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   30-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-759_;
KW   BEL-759_AA-I; BEL-759_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6801
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6801
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 628-628 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1380..6710
FT                 /product="BEL-759_AA-I_1p"
FT                 /translation="MVLPGGASATKTPTMRALTARLKEIQLSFNDIYRFTQ
FT                 KFSEANSITEVEIRMGKLDELWESYSATMVEIFAHEDYNPEKMSLEKERVE
FT                 FSDQYYGIKTFLLDKIKELQKPLVLEPPSRAGDGPASNTSDHVRLPQIQLQ
FT                 TFNGDIDDWLSFRDLFTSLIHWKVDLPEVEKFHYLKGCLQGEPKALIDPLP
FT                 ITKANYQVAWDSLLKRYNNSKQLRKRQVQAIFKLPTLSKESGADLHILVEG
FT                 FERIVQTLDQVVQQNEYKDLLFVNILTARLDPVTRRGWEEFSSTKEQDTLE
FT                 DLFEFLRRRIQVLDCLPPKSADTRGAGQFQQQSKPRTQPMKASYSSTQSIQ
FT                 ASRGRCVACSSDHLLYQCSEFQRMTVSDRDGLLRSHGLCRNCFRVGHQAKD
FT                 CRSKYFCRNCKARHHTLVCFKQEKETKVAAVAGGNKPSNSKDQQESSNTQV
FT                 ANVAATETAVSAAANHHPTQVLLATAVVMIEDDVGNRHPARAMLDSGSESN
FT                 FITERLSQRLQVHRDRVDISVAGIGQVATKVRQRVRAVLRSRVSDFSRELG
FT                 FLVLPKVTVNLPTTTIKTDTWTLPSGIQLADPTFFESSTVDLVLGIECFFD
FT                 FFETGNRISLGEQLPALTESVFGWVISGGISVPARSLQISCNGSTLDNLES
FT                 LITRFWSCEEVESGKAYSPEEARCEKWFSSTVQRDTSGRYRVALPKVEDAV
FT                 SRLGESKDIAFRRLLGTERRLARDPSLRKQYVGFMAEYLELGHMEMVDEAR
FT                 SIPTKRCYLPHHPVVKEASTTTKVRVVFDASCKTATGVSLNDVLLVGPVVQ
FT                 EDLRSIILRSRTKQIMLVSDVEKMFRQIIVRPEDRPLQCILWRNSPSEDVR
FT                 TYELNTVTYGTKPAPFLATRTLHQLALDDEKRFPLAARAAIEDTYMDDIIT
FT                 GADDVETATELQLQLNAMLSGGGFQLRKWASNCPSALTGVSQEGLAIRTMD
FT                 GINLDRDPSVKTLGLTWFPTTDTLGFQFSVPTLDTDTILTKRTVLSVIATL
FT                 FDPLGLLGAVITTAKVFMQQLWTIRNGNGQPLDWDQPLPPMVGEAWRKFHV
FT                 QLPLLDQPRIERCVIISKAVVIEIHCFSDASEKAYGACLYIRSTDADGKVK
FT                 VRLLSSKSKVAPLKCQTIPRLELCGAVLAAQLFEKVHESIRVTTSCYFWTD
FT                 STCVLRWIQASPTTWTTFVANRVAKIQTITEGCRWSHVPGNQNPADLISRG
FT                 VTPEEILENYFWWQGPVWLHESSDQWPKSTEISATSEADEEKRRTVVAATV
FT                 STAADFNQEYFRKFSSYSNLVRRTAYWLRLMKLLRLPSAQRSSSGFLSTAE
FT                 LREAENTLVRLVQRETFVEELKALSKGEAVPRSSQLRWYNPFVTEDQLLKL
FT                 GGRLKHSLESEETKHPVVLPARHPFTRLLLQHYHERLLHAGPQLMLSVIRL
FT                 RFWPLGGRSVVRNIVNKCQKCFRSKPSPIQQFMGDLPAARVVVSRPFANTG
FT                 VDYFGPVYLRPIPRRGAVKAYVSIFVCLCTKAVHLELVSDLSTDRFLQALR
FT                 RFVARRGRCSNIYSDNGTNFVGARNQLQELLKLLKSRDHHDAVSKECAKDG
FT                 IQWHFIPPSAPHFGGLWEAAVRSSKHHLLRVLGETPVTPEDFCTLLVQIEA
FT                 CLNSRPLTPLSDDPNDLEPLTPAHFLIGSSLQAIPEPDLGEVPMNRLDVLQ
FT                 LTQRRLQDFWKRWRREYLCQLQARTKRWQPAVRVEVGKLVVIKDDNQPPMK
FT                 WRMGRIVEVHPGNDEVVRVVTLKTATGLLTRPVEKLCILPLPEDDITKPNE
FT                 TVSPSQ"
XX
SQ   Sequence 6801 BP; 1720 A; 1696 C; 1707 G; 1678 T; 0 other;
     ttttggtcct tcgaaccgga tgtgggccac actggaacct ggactataag gaagccttga        60
     aactggatcg aggctggggc cacgaaaacg gatcgccatc accatttgga ttgtgaacgc       120
     catcacttca gggaacaatt ggaggcttcg ttccattcag gatcgcgcgc caagcgtcgc       180
     tcccctggat cgccatcgct gatgatcgat ttggcttggc ttggactttc ggcaaatgga       240
     gtttttgtgc aggttagtga accctttaca ctatatgtcc agccaagcta gggaaaggca       300
     atcttctaac acctgatttt ctctgtggtg atttgtgacg tggattcaac tgtgttgccg       360
     aggacacgac aacctaggac ttcgcattcc aagggtacag actggcctaa tcgaacactg       420
     gcttcatcgc acggaccaga cgttcagaag gaagaattgg aagaattgag gagccattag       480
     cgttgtagct caaccgttgc tagcaatcca tcatccaagc ccgactttag agaggtcatc       540
     tgaggtcatc gaccggctat ccagctggtg acgaggagga attagactgg cattgtgata       600
     cgctatcggg ttctatttcg gccggcaacc caagctgttg aggaacatcg cccaatccat       660
     tgatgaggtt ttttcggcac agagaggaag catcgcaact agtttgccca ggtaaattta       720
     catttagtgt actgccgaag ctaggcaatc aggaaataca cattttgatt tggattcaac       780
     cctcttcgtg ttacctctct gatcgctgag ccctgcttgc ccttctgggc tcctccgtct       840
     ttgagtttgg attcgtttat cgatgttgga attggacgtc attcgctgga acctaattga       900
     ttgattgttt ggtgcagtaa ttgtttcttg tggtgagttg ccgcagtata tgcctggccg       960
     aagccatttt atttggatac tacaccctaa ttctcctctt caaccatccc ttgttcgagt      1020
     gctggctttt tggatcgatt ttgggtgcaa ggctgatttg gcgtaaaatc aagtttaact      1080
     ggagcaccgc ttcctgttct gtcgggtaaa ttaatgcagt atatgcctag cgaagctagg      1140
     tttacactct gcctactaca ctgcatcctt tcctctttgg tccacttcat tttgctgagt      1200
     tttcgtcgat cgaaattcgg acgtgacgtc acgatactgc ggttgatttc ctgggatttg      1260
     gagcacctct actcgttttc cgggtaaatt aagatagtat atgcctggcg aagctaggcc      1320
     ctcgcagtat actacaccgc atctctctct ttctgctgta ttacaccgac gacaacaaca      1380
     tggtattacc tggtggagca tcagcaacca agacgccgac gatgagggca ttgacggcga      1440
     ggctgaagga aattcagctg tccttcaacg acatctatcg cttcactcag aagttctccg      1500
     aagccaacag catcaccgag gtggaaatac gcatgggtaa actggatgag ttgtgggaga      1560
     gctacagtgc aaccatggtg gaaatcttcg cgcacgaaga ctacaaccca gagaaaatgt      1620
     cgctggagaa ggaacgtgtg gagttcagcg accaatatta tgggatcaaa accttccttc      1680
     tggacaagat caaggagctg cagaaaccct tagttttgga gccacccagc cgagctggtg      1740
     atgggccggc atcgaatacc agcgaccacg ttcgtcttcc gcagatccaa ttgcagacgt      1800
     tcaatgggga catcgacgat tggttgagtt ttcgcgattt attcacctca ctcattcact      1860
     ggaaggtgga tctaccggag gtggagaaat ttcattactt gaagggctgc cttcaagggg      1920
     aacccaaggc cctaatcgat ccacttccta ttacgaaagc caactatcag gtggcatggg      1980
     actcgctgtt gaagcgctac aataacagca agcagctgag gaagcggcag gtgcaagcta      2040
     tcttcaagct accaactctt tccaaggaat ccggagccga tctgcacatt ctagtagaag      2100
     gctttgaacg catcgtgcag accctcgatc aggtcgttca acagaacgaa tacaaggact      2160
     tgttgttcgt caacatcctc acagcacgtt tagatccggt cacgcgtagg gggtgggagg      2220
     aattttcttc tacgaaggag caggacactc tggaggattt gttcgagttt ttacgtcgta      2280
     gaatccaggt tttggactgt cttccaccaa aatccgccga cactaggggt gccggccagt      2340
     tccagcagca gtcgaagcca aggacacaac ccatgaaggc tagctacagt tccacccaat      2400
     caatccaggc gtctagggga cgctgtgtgg cctgctcttc agatcatctt ctctaccagt      2460
     gcagtgaatt tcaaaggatg acagtatcgg acagagacgg tctcttgagg tcccatggac      2520
     tttgtcggaa ctgtttccgg gtaggtcacc aggctaagga ttgccgttca aaatacttct      2580
     gtcgaaactg caaggcacga caccacactc tggtatgttt taagcaagag aaggaaacca      2640
     aggttgcggc cgttgccggg ggcaacaagc catccaattc caaggatcaa caggaatcat      2700
     ccaataccca agtggctaat gtggcagcca cggaaactgc agtgtccgct gcagctaacc      2760
     atcatccaac gcaggttctt ctggcaacag cagttgtgat gatcgaggac gacgtaggca      2820
     atcgtcatcc tgctcgtgca atgctggatt ccggatctga gagtaatttt attacggaac      2880
     gactaagtca gcggttacaa gtccatcgag atcgggtaga catttcggtg gcaggaattg      2940
     gccaggtggc taccaaggtt cgacaaaggg tcagagcagt tctccggtca cgagtttcgg      3000
     acttttctcg tgagctaggc ttcctagtcc ttccaaaggt tacagtgaac ctcccaacaa      3060
     ccaccatcaa aacggatacc tggacactcc caagtgggat tcaactggcg gatcccacat      3120
     tcttcgaatc gagcacggtg gatctcgtac tcggtatcga gtgttttttc gattttttcg      3180
     aaaccggaaa taggatttcc ctgggggagc aactcccagc tttgaccgaa tccgtgtttg      3240
     gttgggtaat cagtggtggt atttcggttc cagctcgttc tcttcagatc agctgcaacg      3300
     gttccacgtt ggacaactta gaaagcttga tcactcgctt ttggtcctgc gaggaggtgg      3360
     aatcaggcaa ggcttactca ccagaagagg cacgctgcga gaaatggttc tccagtacag      3420
     ttcaacggga cactagcggt cgatacaggg tcgctttacc aaaggtggaa gacgctgtgt      3480
     caagattggg tgaatccaag gacatagcgt tccggcgtct tctaggaacc gaaaggagat      3540
     tggctcggga tccatcactc cgaaaacagt acgttggttt tatggcagag taccttgaac      3600
     tcggtcatat ggaaatggta gacgaggcta ggagtattcc aaccaaacgg tgttacctac      3660
     cacaccatcc cgtggtgaag gaggcatcaa ccaccaccaa ggttagggta gtcttcgatg      3720
     cttcctgcaa aacggcaaca ggagtatcgc tcaatgacgt actgctggta gggccggtag      3780
     tacaggaaga tcttcggtcc ataatcctcc gcagtcggac taagcaaatc atgttggtgt      3840
     cggatgtcga aaaaatgttt cggcaaatca tcgttcgacc agaagatcgc ccactccagt      3900
     gtattctctg gcgaaactca ccatcggaag acgttcgtac gtatgagttg aacacggtga      3960
     cgtacgggac gaagccagcg ccttttttgg ccactagaac gctccatcaa ctcgctttgg      4020
     acgatgaaaa acgattcccg cttgcggcac gggcggccat tgaggacacc tatatggacg      4080
     acatcattac aggagcagat gatgttgaaa ccgctacgga gttacaattg cagctgaacg      4140
     ctatgctgtc gggaggaggt tttcagcttc ggaaatgggc ctctaactgc ccatctgctc      4200
     ttaccggagt ttcccaagaa gggttagcga tccgtaccat ggacggtatc aatttggaca      4260
     gagatccctc cgtcaaaacc ttaggattga cctggtttcc taccacggac actctcggat      4320
     ttcaattttc cgttcccact ttggacacag atacaatcct taccaaacga accgtattgt      4380
     ctgtgattgc caccctcttc gatcctctgg ggctcttggg agccgttatc actacggcga      4440
     aggtgtttat gcaacagctg tggaccatac gcaacggaaa tgggcaacca cttgactggg      4500
     accagccgct accgccaatg gtgggtgagg cttggcgaaa attccacgta caactaccgc      4560
     ttctcgacca accacgaatc gagcgatgcg taatcatctc gaaggcagtt gtgatcgaaa      4620
     tccactgctt ttccgacgcc tcggagaagg cttatggagc ctgtctgtat atccgaagca      4680
     cggatgcaga cggaaaggtg aaggttcgac ttctctcttc aaaatcaaag gttgcaccat      4740
     taaaatgcca aaccattcct agattggaac tgtgtggagc ggttttggcc gctcaattgt      4800
     ttgaaaaagt ccacgagtcc attcgggtaa ccacctcttg ctacttttgg acggattcca      4860
     catgcgtcct tcgttggatt caggcttctc caaccacgtg gacgacgttt gtagcgaacc      4920
     gtgtagcaaa aattcaaact atcactgaag gttgtagatg gagtcacgta cctggaaatc      4980
     aaaacccggc agacttgatt tcccgaggcg ttactcccga agagattctc gaaaattatt      5040
     tctggtggca aggaccagtc tggttacacg agagctctga tcaatggccc aaatcaacgg      5100
     aaatctcagc aacaagcgag gcagatgaag aaaaacggag aacagttgtc gcggcaacgg      5160
     tttcaacagc agcggatttc aaccaagagt actttcggaa gttttcgtcg tattcaaatc      5220
     tcgttcgtcg caccgcttat tggttacgcc taatgaagct tcttcgactg ccgtctgcac      5280
     aaagaagcag ctcaggattt ctctcaacag cggaactacg agaagcagaa aacaccttgg      5340
     ttcgtttggt acaaagggaa acatttgtcg aggaattgaa ggcactttcg aaaggtgagg      5400
     cagtcccaag gagttcccag ttacgctggt acaatccatt tgtcacggaa gatcaattgc      5460
     tgaaactagg aggccggcta aagcattcgc tggagtcgga agaaacaaag caccctgttg      5520
     tactaccagc tcgacatcca ttcactcgac tgcttcttca gcactaccat gaacgtttgc      5580
     tccatgcggg accacagcta atgttgagtg tgattagact tcgtttttgg ccgcttgggg      5640
     gaaggagtgt cgttcggaac atcgtaaata aatgtcagaa atgctttcga tccaagccat      5700
     ccccgattca gcagtttatg ggagatttgc cggctgcacg tgttgtagta tctcgtccgt      5760
     ttgcaaacac tggtgtagac tatttcggcc ctgtctacct tcgtcccatt ccacgtcgag      5820
     gagcagtgaa ggcctacgtg tcaattttcg tgtgcctctg cacaaaggca gttcatctag      5880
     aacttgtgtc agatctgtca actgaccgat tcctccaggc gctccgccga tttgtggcgc      5940
     gaagagggcg ttgttcaaac atttattcgg acaacggaac aaatttcgtc ggtgcccgta      6000
     atcaattaca agagctcctt aagttactga agagccgcga ccaccacgat gctgtgtcca      6060
     aggagtgtgc caaggacggg attcagtggc acttcattcc accgagtgcg ccccacttcg      6120
     gaggcctgtg ggaggcagcc gtccgttctt caaaacatca cctactgcga gtattaggag      6180
     aaacaccagt aacacctgaa gacttctgca cgctgctcgt ccagatcgaa gcatgcctta      6240
     attctcgccc cctcacgcct ctgtccgatg accctaacga tctcgaacca ctgacgcctg      6300
     cccatttcct gataggttcg tctcttcaag caatccctga accagactta ggagaggttc      6360
     caatgaatcg tttggacgtc ctgcaactca cccaaaggag attgcaggat ttttggaaac      6420
     gatggcgccg agaatatctc tgccaattac aagccaggac caagcgatgg cagccagcag      6480
     ttcgtgtcga agtaggcaag ctggtagtca tcaaggatga caatcaaccc cccatgaagt      6540
     ggagaatggg acgcatcgtt gaagttcacc ctggaaacga tgaggttgtt agagtagtga      6600
     cccttaaaac tgccaccgga ctcttgaccc gaccggtcga aaagctttgc atactgccgc      6660
     ttccagaaga cgacatcacg aaaccgaatg aaacagtcag cccatctcag tagcccatgt      6720
     ccctttccca ccatcccatc ccgccgaaga ggattttctc tatattttca gaaattcgac      6780
     gaatttcagg gtgggtgagg g                                                6801
//
ID   BEL-759_AA-LTR repbase;    DNA;    INV; 710 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   30-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-759_AA-I;
KW   BEL-759_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-710
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-710
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 581-581 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 710 BP; 205 A; 177 C; 159 G; 169 T; 0 other;
     tgtttgattg cacattgaaa ccccctaaat tacgaccctg tgcctaactg gaggtcgtca        60
     gcttctgcag ccctaaagat cagaaaaacc atccattcta ctggctacct acaagcagcg       120
     atgcagtgag cctagccgaa tcaccatacg aagagcatgg atctcccagg catccaatct       180
     cctactctct aggcgacccc aacatccatc atcatcatca tcatcaccat catcactgcc       240
     gtaggagtga taaggaggac ctgataagag cggcgagaat cgctctgaga accagcgagg       300
     taaaacatcg cagcgggaga ccagcggatc gatagcccga atagttggag caaccttcag       360
     tccaattcta tcaggtcacc aaggcacacg ggcggtggac ccacggccgg ttaattttaa       420
     tccgttttta tatgtgttag tttaagtgca aatttgatag atagtttaag ccaaataaac       480
     ccctttgcat gttcgtgatt aagttttaat aaatgtagtg tttcaatagt cgcgagtgtt       540
     aagtttggtt ggtgtaaacc ccgaaaaagc tgtaagaaca gctagaacgc cccggttgag       600
     gacactgtgc atgcaagaag accattgtgt ggcactaaac aaatcccatc gatgttgggg       660
     acaggaaccg tctgagctat ccacccaagg tatttggacc ttccccatca                  710
//
ID   BEL-75_AA-I repbase;    DNA;    INV; 5833 BP.
XX
AC   AAGE02021353;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-75_AA_;
KW   BEL-75_AA-LTR; BEL-75_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5833
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021353; Positions    9862    4030.
XX
CC   Positions [4551-5123] - Integrase core
CC   'AGTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           255..5528
FT                 /product="BEL-75_AA-I_1p"
FT                 /translation="MSNERRIKSLKTRQKSLLTSFCLIQKFVDEYTEETCE
FT                 REVSVRLEHAETIWKDFNSVQTELETLDESALDDHLKQRVEFETTYFRVKG
FT                 FLLSVNKHDLPSPRTPSSPHSTAQGPLSSHVRLPDIKLPVFTGNLDQWLNF
FT                 HDLYVSLVHSSNELSSIQKFYYLRSSLSGDALKLVQTVALSANNYLVAWNL
FT                 LLDHYQNPIRLKQSYVDSLFEFPSVKRESAPELHSLVEKFETNVKILKQLG
FT                 EKTEFWDVLLIRMLSIRLDSTTRRDWEEYSSTLNAVSFKELTSFIQRRVNV
FT                 LQTIGKTAENYSPSNSMKKPTQRIVSSHGASPTNQRKCVACSDHHPLYQCG
FT                 VFSKLSVDEKEKEVRRHQLCRNCLRKGHQAKECPSSSTCRKCRGHHHTQLC
FT                 LGATHINTKPADTPLKENTNLPSSENPSASVSASVDDCASYSSAGRGGKRV
FT                 LLATAIVIVVDDNGTEHPARALLDSGSECCFATESFSQMVKAQRKRIHLPI
FT                 AGIGQSSTESRFKFASKIRSRISEFSANVDLLVLPKVAIDLPSATFDSSSW
FT                 DIPSGIQLADPAFYKPNKIDLILGAEVFFDLFKVSGRIQLGPGLPTLINSV
FT                 FGWVVSGKSSHNPTSTPIVANVATIADLHDLVQKFWALEEDNLQPCYSVEE
FT                 SACEEHFRRTVNRNAEGRYIVSLPIKEDVLAKLGDNRRTAIRRFHLLEGKL
FT                 AHNAELDQQYRSFMEEYFQLGHMERVQDHQQNRLPCYHLPHHAVVREDSTT
FT                 TKVRVVFDASCRTTNGPSLNDALMVGPIVQDDLRSITLRSRMHPILINADI
FT                 KQMYRQILTDDRSNSLQHIVWRASPESPLQTYELKTVTYGTASAPFLATRV
FT                 LRQLADDEQIDFPIAADVLRNDFYVDDLFTGANTTEEAIELRTQMESLLKR
FT                 GGFELRKWASNDPVVLQDVPSENRALKPSIDLDREACIKTLGLHWEPGTDV
FT                 LRYKTQIATDSMDGLTKRIALSYIARLFDPLGLVGPIITTAKIFMQAIWAL
FT                 LDEDGKPWSWDKILPPTFRTRWEMYQTQLPNLNQLRVPRCVTFSSPTSLQL
FT                 HVFTDASEHAYGACVYIRSTNNTGEVKINLLTSKSKIAPLKRQSIPRLELC
FT                 GALLGAQLYEKILIALKIKAETFFWVDSTVVLCWLKSSPSAWATFVANRVS
FT                 KIQLATENCSWNHVAGVQNPADLISRGTTTDQLIASKLWWNGPEWLALDPS
FT                 EWPAFHLNMVESNEALNEAKATSNNAVTIAEEPSFIDEYVAIHSNYHRMLR
FT                 ITAYCLRFLRNCCLKSNDRRTGILTTVEINAAETTLIKLVQRQFFGNEITQ
FT                 LQQGNQISTKSRLRWFHPFLDAHQVLRIGGRLSNSLLPFESKHQAILPSSH
FT                 PFSALLVQSIHLRQLHAAPQLLLTILRLRHWVIGARDLAKRTVRNCVTCCR
FT                 NRPKTIQQFMAELPSTRVTASRPFTTTGIDYWGPIQIKQQHRRAAPRKAYV
FT                 AVFVCFSTRAVHIELVADLSTAKFIQALRRFVSRRGICSDIHSDNGRNFVG
FT                 AANELRRLINSKEHQAAVSQECLSNGIKWHFNPPKASHFGGLWEAAIASAQ
FT                 KHFFRVLGPHILCYDDTETLLTQIECCLNSRPIIPISDDPSDYEVLTPGHF
FT                 LVGSSMKAVPDIDHSATPFNRLHQWQQVQKLFQHLWQRWNREYLFTLQQRT
FT                 KWVNPPTIIDVGRLVILKDENAPPMTWQTARIEELHPGADGIVRVVTLRTS
FT                 QGKFTRPVSKICLLPVASNETKTTPSSKTASSSKQLSP"
XX
SQ   Sequence 5833 BP; 1596 A; 1583 C; 1259 G; 1395 T; 0 other;
     aagtggtcct tcgagccgga tctaccgtcg aactccggag atccccaaac cttctggtag        60
     tttccaccac gtgcttggcc aattctgagg tacccgaata acccagcctc catcgaagct       120
     tctggagcaa cgtagattca tacaaggcaa aatcttgcct gtgatcaggt aattagtatt       180
     cctttctttc tatcccgttc ccgtgtgagc tacgcggtct gtgcattcca gatccagctc       240
     aatctctacc agtgatgtcc aacgagcgac gcatcaagtc gttgaagacg aggcagaaga       300
     gcttgctgac gtcattctgc ctaattcaga agttcgtcga cgagtacacc gaagaaactt       360
     gcgagcgtga agtgtccgtc cgcctagagc atgccgaaac catctggaaa gacttcaact       420
     ccgtccaaac tgaactcgag actttggacg agtctgctct cgacgatcac ttgaagcaac       480
     gtgttgagtt cgagactacg tacttcagag tgaagggatt cctgctttcg gtcaataaac       540
     atgatctgcc gtcacctcgt actccgtcgt ctcctcattc aactgcgcaa ggccctctgt       600
     cgtcgcatgt aaggttgccc gacatcaaac ttcccgtttt caccggaaat ctagatcagt       660
     ggctgaactt ccatgatctc tacgtttcac ttgtccactc atcgaacgaa ctttctagta       720
     tccagaagtt ttactatctg cggtcgtcgt tgtccggaga tgccttgaag ctggtacaaa       780
     cagtagcact cagcgccaac aactacttgg ttgcctggaa cttacttctg gatcactatc       840
     agaaccccat ccgactcaaa cagtcctacg tcgattcgct attcgaattc ccttcggtca       900
     aacgagaatc tgctccagaa ctacactcac tggtagaaaa gtttgaaacg aacgtaaaaa       960
     tcctcaagca gctcggggag aaaactgagt tttgggacgt gctgctgatt cgaatgctga      1020
     gcatccgcct tgattctacc actagaagag attgggagga atattcgtcc acgttaaatg      1080
     ctgtctcgtt caaggaactc accagtttta tccagagaag agtcaacgtt ctacaaacca      1140
     ttgggaagac agctgagaac tattcacctt ctaactcaat gaaaaagcct actcaacgaa      1200
     tcgtgagcag ccacggagca agtccaacta atcagcgtaa gtgtgttgct tgctcagacc      1260
     atcatccgct ttaccaatgt ggggtattct ccaagcttag cgtcgatgag aaagaaaagg      1320
     aagtccggcg tcaccagctg tgccggaatt gcctccgcaa aggacaccaa gcaaaggagt      1380
     gtccgtcttc gagcacctgc cgcaaatgtc gaggtcacca tcacactcaa ctgtgccttg      1440
     gtgcaaccca tatcaacaca aaaccagcag atacgcctct taaagaaaac acaaacttac      1500
     catcatcgga aaacccatct gcgtcggtgt cagcatctgt cgacgactgt gcaagctact      1560
     catctgctgg tcgtggtggc aaacgtgttc ttcttgccac tgctatcgtc atcgtagtcg      1620
     acgacaacgg aaccgaacat ccagctagag ctctacttga ctctggcagc gaatgctgtt      1680
     ttgcaacaga atcattttcc cagatggtga aggctcaacg caaacggatc cacctaccta      1740
     tcgccggcat tggacagtca tcaactgaat ctcgtttcaa atttgcttca aaaattcgct      1800
     cgcgcatctc cgaattttct gccaacgttg atctgctcgt actgccgaag gttgccatcg      1860
     atttgccatc agctacattc gactcatcat cttgggatat tccatcggga atccaactcg      1920
     cagatccagc attctacaaa ccgaataaga tcgatcttat cctcggtgcc gaagtcttct      1980
     ttgatttgtt caaggtttct ggccgaattc aacttggacc tggtcttcct accctcatca      2040
     attcagtttt cggatgggtt gtctctggaa agagttccca caacccaaca agcacaccaa      2100
     tcgtcgctaa cgtcgccact attgctgatc tgcacgacct ggttcagaaa ttttgggccc      2160
     tagaagaaga taatttgcaa ccctgctact cggtggagga atccgcttgc gaagagcact      2220
     tccgtcggac agtaaatcga aacgctgagg gccggtacat cgtcagctta cccatcaaag      2280
     aggacgtttt agccaaactc ggcgacaacc gtcgcacagc catacgtcgc tttcatttgt      2340
     tggaaggcaa gctcgctcat aatgctgagc tcgatcagca atatcgatcg ttcatggagg      2400
     aatacttcca gctgggtcat atggagcgcg tacaggatca tcagcaaaat cgtctaccat      2460
     gttaccacct cccgcaccac gccgtcgtga gagaggacag caccactaca aaagtacgcg      2520
     ttgtctttga cgcatcctgt cgcactacta atggaccttc cttaaacgac gcacttatgg      2580
     tgggccctat agtgcaggat gatttacgat caatcacgct tcgatcacga atgcatccaa      2640
     tcctcatcaa cgcagatata aaacagatgt accggcaaat cttgacggac gacagaagca      2700
     acagtctcca gcacatcgtt tggagagcat caccagaatc ccccttacaa acctacgaac      2760
     tcaaaaccgt tacttacggt accgccagtg ccccgtttct cgccactcga gtgctgcgac      2820
     agttggccga cgacgaacaa atcgactttc caatcgcagc tgacgttctt cgtaacgatt      2880
     tctacgttga tgatttgttc acaggtgcaa acacaaccga ggaagcaatt gaactccgaa      2940
     cccaaatgga atcgcttctc aaaagagggg ggttcgaact gcgaaagtgg gcctctaatg      3000
     acccagtcgt tctacaagac gttccgtctg agaatagggc acttaagcct tcgatcgacc      3060
     tcgatagaga agcatgcatt aaaacgctag gcctccactg ggaacccggc acggacgttc      3120
     ttcggtacaa aacccaaatc gccacagatt caatggacgg actcactaaa cgtattgcgc      3180
     tgtcgtacat agcgcgacta tttgatccac ttggactcgt tggtccaatt atcaccacag      3240
     ccaaaatctt catgcaagca atatgggcct tacttgatga agacgggaaa ccatggagtt      3300
     gggacaaaat actacctcca acattcagga cgcggtggga aatgtatcaa acgcaacttc      3360
     caaacctcaa ccaactgcga gttccacgct gtgttacttt ctcgtcaccc acctcgctgc      3420
     agctgcatgt cttcaccgat gcatcagagc acgcatatgg tgcgtgcgtc tacatccgct      3480
     caacaaacaa caccggcgaa gtcaagatta atctgctcac atcgaagtcc aagatagctc      3540
     cacttaaaag gcaaagcatc ccgagacttg agctctgcgg cgcgcttctt ggtgctcagc      3600
     tgtacgagaa aatccttata gcactcaaaa tcaaggctga aacttttttc tgggtagatt      3660
     ctactgtggt tctttgttgg ctcaaatctt ctccgtcggc atgggcaact ttcgttgcaa      3720
     atagggtctc caagatacaa ctggccacgg aaaactgctc ttggaatcat gtggcaggtg      3780
     tacaaaatcc agcggattta atttcaagag gaacaacaac agaccagctc atcgcaagta      3840
     aactctggtg gaacggaccg gagtggctgg cactcgaccc cagcgaatgg ccagcattcc      3900
     acctcaacat ggtcgaatcc aacgaagctc ttaatgaagc taaggcaact tctaataatg      3960
     ccgtcaccat agcggaggaa ccatcattca ttgatgaata cgtcgcaatc cactctaatt      4020
     atcaccgaat gctgagaatc acggcatact gccttcgttt tctacgaaat tgttgcctca      4080
     aaagtaacga ccgcagaact gggattctca ctactgtaga aatcaacgca gcagaaacga      4140
     ctctaatcaa actcgtccag cgacaattct ttggcaacga aatcacacaa ctacagcagg      4200
     gaaaccaaat ctcaactaaa tcacgactgc ggtggtttca cccctttctc gatgctcacc      4260
     aggtgcttcg aattggagga cgacttagca actcattact accttttgaa agtaaacatc      4320
     aagcgatact tccctcatct catccattct cggcattatt ggtgcaatct atccatttgc      4380
     gccaactcca tgcagccccc caacttcttc tcacgattct tcggctgcga cattgggtaa      4440
     taggggccag ggatctggcc aaaaggactg ttcgtaattg tgtcacctgt tgtagaaatc      4500
     gacctaaaac gatacaacaa ttcatggcgg aattaccctc tacgcgagta acggcaagca      4560
     gaccattcac gacgacagga atcgactact ggggaccaat acaaattaaa caacaacatc      4620
     gacgggccgc accgagaaaa gcctatgtcg ccgtgttcgt ttgcttcagt acgagggccg      4680
     tgcatattga gctcgtggca gaccttagca cggcaaagtt catacaagct ctgcgacgat      4740
     ttgtttcccg acggggcatc tgttcagaca tccacagcga caacggcagg aatttcgtcg      4800
     gagcagctaa cgagttgcgc cggcttatca atagcaaaga gcaccaagct gcggtgtccc      4860
     aggagtgtct ttcgaatggg atcaaatggc acttcaaccc gccaaaagct tctcattttg      4920
     gtgggttgtg ggaggcagca atagcttctg cacagaaaca ctttttccgc gtcttaggcc      4980
     cacacattct gtgctacgac gacacggaaa ctctcctcac gcaaatagaa tgttgcctga      5040
     actccagacc aattattccc attagcgacg acccgagcga ctatgaggtg ctcactcctg      5100
     ggcatttcct ggtcggatcc tcaatgaaag cggtaccaga catcgaccat tcagcaactc      5160
     cattcaaccg acttcatcaa tggcagcagg tgcaaaagct atttcagcac ttgtggcaac      5220
     ggtggaaccg cgagtaccta ttcactctac aacaacgaac gaaatgggtg aatcctccaa      5280
     caattattga tgtgggaagg ctggtcattc ttaaagatga aaatgctcct cctatgacct      5340
     ggcaaacagc gcgcatcgaa gaactacacc ctggagcgga tggaatcgta cgtgttgtga      5400
     ctcttcgaac atcacaagga aaattcacac gaccggtatc gaaaatttgc ttgctgccgg      5460
     ttgcatccaa cgaaaccaaa acaacaccgt cttccaaaac agcttcgtcc agcaaacaac      5520
     tttctccgta gtttccacat ccatccttca gcaatcagca gcgcggaatg aaaatttaag      5580
     gccctttatc caaagggaca aggtgagaac ctgtccatta atcctcaaat ttgcgaaacc      5640
     cgctaccggg tctttgtttt ccattttctc gtcagcaacc atggcttctg ttcttttgct      5700
     ccggtcgaaa aatctcttga cgtttggacc aaaacaatct tcggcatcgg attggttcgt      5760
     catcgaccga gggacaaccc gctagtggaa aattcgttat catccagaaa tgtgatttct      5820
     gaaggggcca gga                                                         5833
//
ID   BEL-75_AA-LTR repbase;    DNA;    INV; 519 BP.
XX
AC   AAGE02021353;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-75_AA_;
KW   BEL-75_AA-I; BEL-75_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-519
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021353; Positions    4029    3511.
XX
SQ   Sequence 519 BP; 165 A; 111 C; 111 G; 132 T; 0 other;
     tgttcgtgca ccacgaaaga actttgtctg ttccctccat ctgtgtaccg cgacgtgtgg        60
     cgattccctc gtgcgagaac attagtccga caaggatgac agctaatgac aatagcccct       120
     tcggaaatgc caagatggag aaaaacagac ttccgatccc tagtatataa aaggcctcga       180
     gagacgtcat catcctcttc tttcatccct ctacgacgat acatggagcc atcatcgacg       240
     ttcatccaca cggaaattta aaaatacagt gaattagaaa aaattaagtg aactctaatg       300
     aaagtgaatt tgttgtagct tgcatgaaat aaaaattaag gtataagtga acatttaaat       360
     taattcgagg aataaagtgg acttaaggtg aaacgaagtt gttgcgaatg ctgtagaaga       420
     aaggactaaa taccaaagtg cgatcaactt ggccgcgata tccttggcct ggcagtggtt       480
     ctcagtgtaa ccgtccaccg ttcatctgtg ctaccgaca                              519
//
ID   BEL-75_DTa-I repbase;    DNA;    INV; 5656 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   16-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-75_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5656
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Paired LTRs are 96% identity to
CC   each other.
XX
SQ   Sequence 5656 BP; 1628 A; 1149 C; 1242 G; 1637 T; 0 other;
     ttttggcgcc cccgggtgga cattttgtgc cataaaattg gacacttcga gtttatatct        60
     ttggacactt tcgtcggacc catttcgttg gagccaggtc gttggagtca tttggaaaat       120
     ttggttggag ccgatttctg gacgccgggc aattaaattt ggattaaaag ccctcatcgc       180
     aaaaattggt ttgagagtga gaatgcctta ttacaaaaat agttggcatc aaacaaataa       240
     ggtaaaaccc taataaaata tatttcataa aggcagatgc acattgcata aggccacata       300
     tatattaccg ctaattcgca agtaccagta aaaagggtca caagaaaaga agtaccgtat       360
     cgttggtaat cgtcttctct ttgtgccagt ttcgttttgc tgtggctgca tacataagtg       420
     catacagtta tttaagcccc ttgaccgcag ctaagcccag cttatataca tcaaaaaagt       480
     tgagtgattt gcatggtagc ttttcactca ttgtttgcac tgcgctcgtc tatttggaag       540
     tcactcttat attcgagcca cattgagccc tttacattgt gaatatgtaa taacagcttt       600
     gcacaataat taaaaattat ttttggatat cactgcgctt atttaattgg agatcactaa       660
     tacggagttc gattgttttg agtaatttgg ttcagagtta cagtggaaca tttcaactat       720
     tatagctttg ctaaataatt aaatttttgt ttgtaatttt ctaaaaatgc ctaaatgtcg       780
     tggagcttct gacagcaata cttctattgt agaagctgat tcagaaaata ttttgagaaa       840
     attggattca gttaagaagg atataaatcg taaataataa taaataaata aaaagatttc       900
     gtttaactct gaacagttgg attgtcgttt gagtattttc gatacgtata tagatcgcgc       960
     attttcgtta caactgcaaa ttgaggatgt cgatccggac ttgccatcgc gatctgaact      1020
     tgaagattta tacgtgctaa ccagagcatt gttattgtca gtaaaaaatc cagccccgtc      1080
     aagcaatcta aacgaatcag tgtttaatac aactctatcg aatactagac accttcctcg      1140
     aatgcagttg cccaagtttg gtggtaaata ttctgaattc aaaaacttta ttggattatt      1200
     ttcgagcata attgatagtg acccatccct aagcaacgtt gaaaagttta atcatttatt      1260
     atgttgctta gaaagcgaag cgttaggtac tgtaaaagcc tatccaaagt ccacctgcaa      1320
     gcgcattgcg gtcgcttatt gatacagtat gggcaatata tgagtccttg ttgtccgttg      1380
     gcgacgaaaa ggttattgca aacgcactat taattcacat tgtcatgtca aaggttgacg      1440
     gaaagactcg ctctaggtgg gaagagaatt tagattacca aaaaatcccg ttatggtctg      1500
     agtgtgttac tgcccttaat aagcgttttc agcatttgtc ggctgaagag gctacaagtg      1560
     gacgctcaaa aggtcgcaaa ggacaacaag atactagaaa caagcaattt ggcaaaactt      1620
     cactggcagt atcacaaaca attagaaccc cggaaacagc caaatgttcg ttctgcaagt      1680
     ctaatgacca ttttatcacg acatgtccat cattctcagc tgcttctgtc atggctcgtt      1740
     ttaaatttgc caaaggggtc ccactttgca acactcaaac gtgttgtcgt cgaatcatgc      1800
     aagcaccctc gatgcacagc aagttgtttt ggcgacagca attgtagata ttaaaggtgg      1860
     ctcttgtcag attcagccag ccagggtact tttggattca ggttcccagg tcaattttat      1920
     aacggacgag ttggcgagaa gtttgcagct aaaacggatt cgaaaagaaa ttaacttgtt      1980
     gggaatttga aaatcaagct tatctgcgca ccaagttgtg caaacaacaa ttagttctcg      2040
     cattcaaaag tatgaaatgg ttgctgactt cgtcgttcta aaatctatct cctcttatca      2100
     cccagaaaaa ggcgtttcaa ttaaatctat taatattcct ccaaatatac agcttgctga      2160
     tccagccttt tataagccac aaaaagtaga tctgctgctc ggagcagacg cgttttttga      2220
     tcttttaaaa gatggcaaaa ttaaacaaga aaatacactg actttgcaaa acactgtttt      2280
     tggttgggtg gtgtcagggc ggtgtaaatc aaaccaaccc caagggactg aagcgtgttc      2340
     tttggtgagc atagttgagg agtctggtcc acttgaagaa ctagttaaac gattctggga      2400
     gttggaacaa gttccaaatg tttcgggcga caaactatat accccagaag aaatgctttg      2460
     tgagaaaatc tttcgagaaa caattgttcg tttaccctca ggtcgattgc aagtatcctt      2520
     actatttaaa tctagcccaa cgtgtctcgg atcatcgttt gagatggcga gaaggcggct      2580
     tttatcgtta gagagacgat taactaaaaa tccgaagacg cagttaatgt ttaatcaatt      2640
     catggaagag tatttggctc tcggacatat gactgcaatc gagggttcaa ttccgaaaga      2700
     ttcgcattgt tttataccct accaatgtgt agaacgtcca caaagcacat ccactaagct      2760
     tagagtggta tttgatgcat cttgcaagac tacttctcaa gtatcgctta atgaccttct      2820
     tatggtagga ccaacaatac agccatgctt gtattccact ctcctcaggt ttcgttgtcg      2880
     caaatacgca cttgttgcag acataactaa aatgtaccgt caagtggagg ctgacgaggc      2940
     gcaacgaatt tttcaattaa ttgtatggag aagagatgct gccagcccct taaaaactta      3000
     tcgcctaaat acggttactt atggaacagc aagtgctcca tttcttgcag taagatgctt      3060
     aaagtatctt agcgagaccc atttgcaatc tcatcctcaa ggtgcaagat gtctcggcac      3120
     ggacttctac gtcgatgatc tgctcaccgg agcggacaca gagcagggaa tggctgttct      3180
     tcgtcgcgag ctaattgaga tcctggaacc agcgggcttt gttttgacaa aatgggcttc      3240
     gaattgcaaa acaggtacaa gcgacaaatc gaatgcggaa attttacaag gagatcgtca      3300
     agatctcaag actctggggt tgacatggaa tccacagact gacgttttca agtatggcgt      3360
     taggaaagtt tccacagatc aggtggttac aaaaagattg atcttgtcct ttatagccac      3420
     actttttgat cctttgggat tgttatgccc aataataact agatcgaaaa tatttctgca      3480
     agaggcttgg cttttgagtc tgaactggga tgaccctgtg ccccaagact ttgaaaggaa      3540
     gtggaacctg gtaaaaatga ctatgcattc ctggacaaat tggttattcc aagattcgtt      3600
     ggagcacgca aacaagcatc gtgtcaaatt catgggtttg ctgatgcttc tactcgggcc      3660
     tatgggtgct gcctttacgt tagagtggtt gagccaagtg gggtgtcggt gcagttgcta      3720
     acagcaaaat cttgggttgc acctttaaaa acaaagacgg tgcccagact agagctatgt      3780
     gcagcgcatt tgttggcaaa gctttgggaa gaagttcgca ccatcatcac ctttccagtc      3840
     gatagtgttg tcctgtggtc cgattctgaa gtagttcttc actggataca aactcatcca      3900
     tctcagctgg ctacatttgt ctctaatcga attgctgata tacaagacat tgtgtcatca      3960
     gctgtttggc ggcatgtgcc aaccaaggaa aatctggctg atttagtctc gcgaggatgc      4020
     tctgttgatg agctaaatac ctcattttgg tacaatggtc ctagcttttt acagaaggcc      4080
     aataaattct tattttcagc tatcagaaat agacgcagca ctagaaacca aaaaggcaca      4140
     cgttgctctc atcgcggccg atgttgaagt aagcccgatg ttaaatattg tagaaaggtc      4200
     atcgtcgtat ctgaaagtag ttcgcattgt ggcttatatg tatcgattta tccaccgaag      4260
     aaaaaagatg tcttggaatt caatttgtcc ttcagcggac gagcttggta cagcgtttct      4320
     taaagtagtt gaagctattc aaaagacggc atttgctgaa gaaattgtaa aactagaaaa      4380
     atccgctaat attcgtgctg gaattcaaaa attaaatcct tttctattag ttgaacagtc      4440
     tggaacgtcg tcatattctt tgttgcgagt atgtggtcgt cttctacatg ccccccttgc      4500
     tcacaatgct aaatttccct tgttaatgcc taaaaattgc aaatttgtga ccctatactt      4560
     gagacactta catagaacca actgtcacgc gggtccacgg tcgttggttg ggcttctcag      4620
     acaagtgatt tggcttatta acgcacgtca tgggtgcagt accattgtac ggcagtgcgt      4680
     tcattgtttt cactataaac caaaacttct atcacagata atgggtaatt taccaagaga      4740
     tcgattgcat ggaaatagac cctttgaagt aagtggatct ctttgggcct gttaaagtct      4800
     cacttggaat tcggggaaag cagccaatca agatgtacat agcagtgttt gtctgctttg      4860
     cttccaaggc tgtatatttg gaaattgtga aagatttgac gtctaataca tttattttat      4920
     gcttatccag gtttgtgggt cgtcgtggtc ctgttgtcaa actttattgc gacaacgcca      4980
     cgaattttgt gggagctgct cgaatcctga aggagttttt ggaacctgtc gacaccaacg      5040
     accagagcat catgtcgtat gctgcggccc accgatttac catcgaattc atccctccca      5100
     gagcgccaca tataggcggc ctttgggagg cggccgtaaa atcggccaag catcttcttc      5160
     tcagagccat ggccagagct attctgaagg aggacgagct ccataccgtc atagtggaag      5220
     tggaagccgt cctaaattcg aggccgctca tcgtagacag tggcagtccc aacgaggtag      5280
     aggttgtcac gccagctcat ctgctagtag gcacaacgct agcaacgctg ccgatggcag      5340
     ctagtctcag caatcaaaca gcggctttgg agcgactggt caagggacta tcttttgagc      5400
     ctacagcagc gagggaaatg gaccaaaggc gtggacaatc ttcagatcgg aacagtggtg      5460
     gcaatccacg aagacaacgt tcccccccag ctgtggataa taggcatagt cgtagaggtc      5520
     gttccaggac atgatgggaa ggttcgcgtg gccatagtca gaaccaaatc gggtctatat      5580
     aaacgctcca ttcaccgcct tgcacctatt cctattagtt gaagcatttg tatgttaatg      5640
     ctgtcaacgc ggccga                                                      5656
//
ID   BEL-75_DTa-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.10, Created)
DT   16-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-75_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-295
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5683-5683 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identity to consensus.
XX
SQ   Sequence 295 BP; 89 A; 56 C; 54 G; 96 T; 0 other;
     tgttcagtca attcggtggc gatttacttt tgtaaaagaa tgtaacaatt agtacctaag        60
     atctcatgaa gtcgaacttt ccctctcgta ttaaaaagag ctttcgctcc ctcgcactcg       120
     cgagaaccac tattgtaact ttgaaactca tataatggct ctagaagagt ttgaataaat       180
     gtgattggat cactctcaat ttggaaacga aagtgtctac aagtactatt cttgtctgtc       240
     cgaattatta gttgaaaata aattgccgta ttggccttcg tgatttgcac gaaca            295
//
ID   BEL-760_AA-I repbase;    DNA;    INV; 7272 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   30-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-760_;
KW   BEL-760_AA-I; BEL-760_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7272
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7272
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 629-629 (2019).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           813..6221
FT                 /product="BEL-760_AA-I_1p"
FT                 /translation="MTKASLRQLVKEEHQLKAALDNVQDFVDGYDEDRDQS
FT                 VVELRLVKLDSIFDRFCAVRVEIDVLLDETGDYESADDESSKKSVPTIADS
FT                 VRTYKEFENAYFRLKSALLAKRPRTQPGVIDRQPVAGGVQQSRLKYPELKL
FT                 PSFSGKLQEWINFRDNFRSLIHDNDDLNPIDKFNYLRASLKDDALLQINQV
FT                 QVSAASYPIAWGILEAKYENHKLIAHEHLKALFAVPAMKSETFEALNIVLT
FT                 TFKVNLQQLEKLGENTKDWSTLLAFMLSQKLDTTTLRQWETHHGSKDIPQY
FT                 EAMVDFLEKQCAILQSTSTRSAVEQKRPFRSSTVHTLVPVTSSCPICNGGQ
FT                 HSIEQCRRFAKMRVVDRKMLIRRLGLCLNCLSSGHFVADCSRRTCSKCGQR
FT                 HHYLLHPYSPPISTPQNQPPINPSRPQAANANTNAQSQSRPQSQGQQSQSQ
FT                 YQGQSRMNTQANPHTPPVQNTTPPHTRQPPPTNTPTTSHHTATSHNMRSQR
FT                 NTTLLSTALVKLADRFGNTVIARALLDNGSQISMITENLSQRLNFKRFHEN
FT                 LPVNGVGGASTVAKQSVLARILSRYSSFETAEVKFFVLPRITLNLPQQNID
FT                 ISSWNLPTDICLADPDFHESSAVDAILGVEIFYELLLSEQMKLSDAGPILR
FT                 NTELGWIVAGEVPDNSMSTFSAVTTSVTTEEVREQLARFWELESCRTKSCL
FT                 SIEESSCESIFEQTTTRDPDGKFRVVLPKKEYMLEQLGKSKEIATKRFMGL
FT                 ERRLNANPEMKALYTAFIHEYLLMGHMREVRDDEEEPMHTYYLPHHAVMKP
FT                 DSTTTKLRVVFDASCATDTGVSLNDTLMVGPVVQSDLLSILIRFRLHKYAI
FT                 VADVEKMYRMINVVEQDQPLQRILWRESVDEPLRTYQLSTVTYGTSSAPYL
FT                 ATRSLKKCAEEGEQTYPAAANIIKHDFYVDDMLAGAKSVKEGARLCKDVLS
FT                 LLGSFGFNLRKWHSNQPAILKSIPSHLHDKRDLLDIDTTSTVKTLGLTWEP
FT                 ALDMFWFKSPRWNMKSPVTQRIVLSDSARLFDPYGLVGPVIVQAKMFLQEL
FT                 WKQKYSWDEPLSPDLQSQWLEFRTNLDRIDAVSVPRWIAFSDNVVSCELHG
FT                 FCDASEKAYGAVIYLRCVTQKGEVTVRLVMAKSKVAPLEDLKRKKKRQSIP
FT                 RLELSSALLLAHLYETVAESIQIPAKTYFWTDSTIVKCWLSSHPSRWQAFV
FT                 SNRVSEIQHITRDGFWNHVPGVENPADIISRGVTPLQLAESSVWWNGPAWL
FT                 QEDSTMWPKMSSSSEQQFDSVTLEEKPLVTAALQMLPPSEIFTRYSSLLKL
FT                 IRSTAWTLRFVQNCRISNRACRRTGVLNAKEHEEALSVLVKLAQSECFPVE
FT                 LSDLAAKGEVKSSSRLHTKDPVLQDGLIRVGGRLRHAPVSFGRKHPIVLDS
FT                 NHPLTKLIMVDYHHRLLHGGPQLMLSCVKERFWPLSGRNLARKVVHECVTC
FT                 FRARPQVHEQLMGDLPMERVTPAPVFLRVGVDYCGPFNVRQGSRKAAPVKC
FT                 YLCVFVCLVVKAVHVEMVADLTTEAFIAALRRFVARRGKPEVIFCDNATNF
FT                 VGARREISELHRLFRAEQFQNAVVSDAAKDSIEFKFIPAKSPNFGGLWEAA
FT                 VKSLKGHMRKVIGNTVLRSDEFLTVVTQIEACLNSRPITPISSDHRDLEAL
FT                 TPGHFLVQRPLSAIPEPSLTDIPENRLSRWQLVQRFSQMLWKRWSTDYLSD
FT                 LHNRNKWTKRRDNLHIGTMVLLKEDKVPPLQWQLGRVTEIHPGADGIIRVV
FT                 TVRTQQGSFRRGIQKICILPIRDNQQQAEEAQ"
XX
SQ   Sequence 7272 BP; 1811 A; 1749 C; 1877 G; 1826 T; 9 other;
     ttttctggtc cttcgagccg gattaggcca atccgcggga ccacgtaata gtgaatagtg        60
     cgaagtggct tgggtacatt gtgcggtgac ccattgtctg tccgttttat ttttgttctc       120
     gatcagtgaa cccttgatcg aagccattgc ccgcgcgtga aaagtgtgac tgcccagtgt       180
     ggctattata aagagggccg ttttgattgc ccgttgtgga gtggtgattg atattcgata       240
     amamaaaata gtgctaamgg ctgcwgcgct gccctgtatg cagttgggga ttaacatcag       300
     ccgttcccca tccatcgaca atagctgctt ccagagcctt ggatgctgtt ttccacatwc       360
     ctcggccgtt cgccttccat cgacmcgtcg gctgctcgtt aggttggaag ctgttttttt       420
     cgccatttcg tccccccagg agcatcattc agcgcccata ggagtcagat aagtagccag       480
     tgtgtgtgtg aatgtgtggt tgaggtggct taggagaaag tagcctgcat gtaaaggcta       540
     attaatttaa agcgcattcg ttttgctaca ttcagccagc gctctgttac cgtagtgtgg       600
     tgcgagcttg gacaaatttt atttgaattg tggaggataa atttgagttc tccggttgac       660
     tatttaattt tggcacactt gcgatctgcc gtttgataat tccccacaat tagtggttga       720
     taattgagct gtcaatctgt cattcgttcc gcttgaggtc tcggtttcgg ttctgtcgcg       780
     tagtgcagtg caatagtggg tggtaattta cgatgacgaa ggcaagttta aggcagttag       840
     tgaaggaaga acaccagttg aaggctgctt tggacaacgt tcaagatttt gtggatggtt       900
     atgatgaaga tcgtgatcag tcagtggttg aattgaggct agtgaaactt gacagtatat       960
     tcgatcggtt ttgtgcagtt cgagtggaaa tcgatgtgct gttagatgaa acgggcgact      1020
     acgaaagtgc tgacgatgaa agcagtaaga agtccgtccc taccatcgct gacagtgtcc      1080
     gaacctacaa ggaattcgag aacgcgtact tccgtctcaa gtcagcactg cttgcgaaac      1140
     gccctaggac ccaaccaggt gttattgatc gtcaacctgt tgccggaggt gtccaacagt      1200
     cgcgtctgaa gtatcctgag ctgaagctgc cttccttttc cgggaaattg caggagtgga      1260
     tcaatttccg agataacttc cgatcgctga ttcatgacaa cgacgacctg aatcccatcg      1320
     acaagtttaa ctacttgcga gcttccctga aagatgacgc gttgctgcag atcaatcagg      1380
     ttcaagttag cgctgcatcc tacccgattg cttggggtat cctcgaggcg aagtatgaaa      1440
     accacaagct aatagcacac gagcacttga aagcgttgtt tgcagttcct gcaatgaaat      1500
     ctgagacctt tgaggcgctg aacatcgttc ttacgacgtt caaggtcaat ctgcagcaac      1560
     tggagaagct gggagaaaac accaaagact ggagcactct tttggcgttc atgctgtcgc      1620
     agaagctgga caccacaacg cttcgccaat gggagactca tcatggatcc aaggatatcc      1680
     ctcaatacga agccatggtc gattttcttg agaagcagtg cgccattctt cagtctactt      1740
     ctactcgaag tgcagtagaa caaaaacgac ccttcagaag ctcaactgtt cacactttag      1800
     tgccagttac cagcagttgt ccaatctgca acggtggaca gcacagtatc gagcagtgtc      1860
     gtcgtttcgc aaaaatgaga gtggtcgaca ggaaaatgct tattcgtaga cttggactct      1920
     gcctgaattg tttatcgtcc ggacattttg tggctgattg ttccagacgt acgtgttcca      1980
     agtgtggtca acgacatcat tacctgctgc atccgtattc tccacccatt tctaccccgc      2040
     agaatcaacc accgatcaac cctagcaggc ctcaagccgc gaacgcgaat acaaacgctc      2100
     aatcacagtc tcgtcctcag tctcaaggac aacaatcgca atcgcagtat caaggccaat      2160
     cccggatgaa tactcaagca aatccacaca cacctccagt ccaaaacact acgccgccac      2220
     atacacgaca gccacctccc acaaacacac cgactacttc tcaccacact gctacttcac      2280
     acaacatgcg aagtcagcga aacaccactc ttctgtcaac cgcgctcgtg aaactcgccg      2340
     atcgcttcgg aaacactgtc attgcccgtg cgctgctgga caacggttcg caaataagta      2400
     tgatcacgga aaacctgtcg cagcgactga acttcaagcg gttccacgag aatctaccgg      2460
     tgaatggtgt aggcggtgct tcgacggtgg ccaaacaatc cgtgttagcg aggatcctgt      2520
     cacgctactc ctcgtttgaa actgcagaag tgaagttttt tgtgctaccc cggattacgc      2580
     taaacctgcc gcagcagaac atcgacatta gttcctggaa tctgcctaca gacatctgtc      2640
     tcgccgatcc cgatttccac gagtcttcgg ccgtagatgc tattctgggt gtggaaatct      2700
     tctacgagtt gctgttaagt gagcagatga agctatcgga tgctggtccg attttgcgca      2760
     acacagagct gggttggata gtagctggag aagttcctga caattccatg tctaccttca      2820
     gtgcagtaac cacttctgtt accaccgaag aagttcgtga gcagctcgca cgtttttggg      2880
     agttggagtc gtgccgcacg aaaagctgcc tctccattga agagtcttcg tgtgagtcta      2940
     tcttcgagca gactacaaca agggatccgg atggcaagtt ccgagtagtt ctgcccaaga      3000
     aggagtacat gctggaacag ttaggaaaat ccaaggagat agccaccaag cgattcatgg      3060
     gtttggaacg ccgcttgaat gcaaacccag aaatgaaagc tctctacaca gcatttatac      3120
     atgagtattt gctgatggga cacatgagag aagtcagaga cgacgaggaa gaaccgatgc      3180
     acacctacta tttgccacat catgctgtga tgaagcccga cagcaccacg acgaagctca      3240
     gagtagtgtt tgatgcatcg tgtgcgacag atacaggagt ttctcttaac gacaccctga      3300
     tggtgggtcc ggtggtccag agcgatctac tctccatttt gattcgcttc cgactccaca      3360
     agtacgcaat cgtcgctgat gtggagaaga tgtaccgcat gatcaacgta gtcgagcaag      3420
     accaaccgct gcaaaggatt ctttggcgag agtccgttga tgagccactt cgaacgtatc      3480
     agctgtcgac tgtgacttac ggtacttcgt cggcgccata tttggcaact cggagcttga      3540
     agaagtgcgc agaggaagga gagcagacgt atccagcagc agccaacatc atcaagcatg      3600
     acttctacgt ggacgacatg ttagctggag cgaaatctgt gaaagaagga gcaaggctgt      3660
     gcaaggatgt tctgtcgctt ctcggatctt ttggtttcaa cctccggaag tggcattcaa      3720
     atcagccagc gattctgaag agcattccca gccatttaca cgataagcga gatctcctgg      3780
     acatcgatac aacatcgact gtgaaaactc taggtttgac ctgggagcca gcgttggata      3840
     tgttctggtt caaatctcca cgttggaata tgaagtcacc cgttactcag cgcatcgtgc      3900
     tgtctgattc cgcacgttta ttcgatccgt atggactagt ggggccagtg atcgtgcagg      3960
     caaagatgtt tctccaagag ctttggaaac agaagtattc ttgggatgaa ccgttgagcc      4020
     cagacctgca gtcacagtgg ctagaattca ggacgaattt ggatcggatt gatgcagttt      4080
     ccgtaccccg ctggatcgca ttcagtgata atgtggtatc atgcgagtta cacggattct      4140
     gcgacgcttc agaaaaggcc tacggagcgg taatatatct gcgatgcgta acacagaagg      4200
     gagaagtcac agtccgatta gtgatggcta agtccaaggt agctccgttg gaggatctga      4260
     aacggaagaa gaagaggcag tcgatcccca gattggagtt gtcgtcggct ctactgttgg      4320
     cgcatttgta cgagacagta gcggagagta ttcagattcc agcaaaaacc tacttctgga      4380
     ccgattcgac gatcgtgaag tgctggcttt cctcccatcc atcgaggtgg caagcgttcg      4440
     tctccaacag agtgtcggag attcagcaca ttactcgaga tggcttttgg aatcacgtgc      4500
     ccggcgtcga gaacccggcc gacattatct cgcgcggtgt aacaccgcta caactcgccg      4560
     aaagctccgt ttggtggaat ggcccggcgt ggcttcaaga agattcgact atgtggccga      4620
     agatgagcag cagttcagaa cagcagtttg attcggtaac tttggaggag aaaccgctag      4680
     taacagcagc gctgcagatg ctaccgccga gcgaaatctt tacccggtat tcgtcgttgt      4740
     tgaagttgat acggtcaacg gcgtggacac ttcgcttcgt ccaaaattgc agaatcagca      4800
     accgcgcatg cagaagaact ggagtgctca acgcgaagga acacgaggaa gctctgagcg      4860
     tattagtgaa gctagcgcag tcggagtgtt ttcctgtgga gttgtcagat cttgcagcga      4920
     agggagaggt gaagtcaagc tcgagattgc acactaagga tccagttctg caagatggat      4980
     tgatccgcgt tggtggaaga cttcgtcatg cgccagtgtc gttcggcaga aagcatccga      5040
     ttgtgttgga cagtaatcat ccgttgacga agctgattat ggttgactac caccatcgac      5100
     tactgcacgg aggaccacag ctgatgctat cctgtgtgaa ggaaaggttc tggccgctat      5160
     ccggaagaaa cctagcaagg aaggtagtgc acgagtgtgt aacctgcttc agggctcgtc      5220
     cacaggtcca cgagcagcta atgggagatc ttccgatgga acgagtgact cctgctcctg      5280
     tatttcttcg tgtcggagtt gactattgtg gacctttcaa tgttcgacaa ggatctcgta      5340
     aggccgctcc ggtaaagtgt tacctgtgcg tattcgtctg cctagtagtg aaggcggttc      5400
     acgtagagat ggttgcagat ctcactacgg aggcgttcat agcagcatta aggaggtttg      5460
     ttgcaaggcg tggcaagcca gaagttatct tctgtgataa cgcgaccaat tttgttggtg      5520
     cgcggagaga aatcagcgag ttacatcgac tgttccgagc agaacaattc cagaacgcag      5580
     tagtgtcaga tgcagctaag gattccatcg agttcaagtt cattcccgcc aaatcgccga      5640
     acttcggcgg attatgggaa gcggctgtga agtcactcaa gggacatatg cggaaggtca      5700
     tcggcaacac cgtacttcgt tcggatgaat ttctgactgt tgtcacgcag atcgaggcct      5760
     gtctcaattc gaggccgata acaccgatta gcagcgatca tcgagatctg gaggcgttaa      5820
     ctcccggaca ctttttggtc cagcgaccgc tgtcagcaat tccggagccc agtctcacag      5880
     atattccgga gaatcgactg agtaggtggc aactggttca gcgtttcagt caaatgctgt      5940
     ggaagcggtg gtctacggac tacttgtcgg atcttcacaa ccgaaacaaa tggacgaaaa      6000
     gaagggacaa cctgcatatc ggtacaatgg tgttgctgaa ggaggataag gtaccgccgc      6060
     tgcagtggca gcttggtcga gtgacggaga ttcacccagg cgctgatggt atcatcaggg      6120
     tagttaccgt tcgtacgcag caaggatcat tccgtcgagg tatccagaag atatgcattc      6180
     ttcccattcg cgacaatcaa cagcaagctg aggaagctca gtagactgtt cagcaccagc      6240
     acatcgttcg tccgccaagt aaactaagta ttttagcccc cgttggggca ctttaggcag      6300
     caggcggcaa gtatttcgcc gtttatgtct gggggcgacc cacaagttac gttcatccct      6360
     cctttcgtat ttgttggaac ctactgcttt gctttccatc gctagggatg tgaacaccaa      6420
     ctgtaccagc tgtagtcgtc ggaacccaag tgttttatct ggtgtgaagt tcaaccgttc      6480
     ccgttaccta tttggacaac aatcaggcta agtacgcccc catatggggc atctgtcggc      6540
     aacctgcggt gctttattac cgctacgcca cgggggcgac gtataagtta cgttgatcca      6600
     cctttgtgta tgttcaggat cccaatcgct ccgtatcttc gacagatcgt ccattcgttc      6660
     gtcatcgcta gccgtcagta cttcctagcc cattgagtat ccaggaaagg ccgccggtat      6720
     aaccatccgg tgtctgccat cgtcaatcgt tccgttcaac aacccaattc atcgtgtcat      6780
     cgagcagcaa ggagctgcac tgcagatgag tattcattgc ccccaagggg caactttggc      6840
     aagctattgg acacaaccgt ccgttttcgc cagggggccg aaccttaagt tacgtgtctc      6900
     ctctgtaagc ccatgcsttg gattacagcc gtgtttatct tcgacaggaa ccaccccgtc      6960
     cgataccgca gtctccagtg tcgtatgcca aatctacgag acatgacatc agtgcacgga      7020
     ttcatcgtct tcgtgatgcg gacgtcgtca tcagtgacca gcggcaggag gaccatccgg      7080
     tcctgttaag tgatattatc gttgtgtaaa atgtgttgga agggagacga atctcagccg      7140
     agatcgtcta gtcgttttgt tacgaacgtw cgatcaaaac aaawttgtat cgctattgtt      7200
     tattgtttag ttagattatt gttctaagaa tgttgtttgt tgttgtgttg agtaaactca      7260
     aggccgccgg ca                                                          7272
//
ID   BEL-760_AA-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 24.04, Created)
DT   30-NOV-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-760_AA-I;
KW   BEL-760_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-400
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-400
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 582-582 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 400 BP; 102 A; 93 C; 96 G; 109 T; 0 other;
     tgttacgtag tatatgatag gcccgtatac gactcacaga gcgaatcggt agccgaatca        60
     gaatgagtcc ctatctcttt atcaccaccg ctcactactg atagcagcat agcaagagat       120
     cttcggtagt tgagtgccat cggtgtaggc atcaggcagt agatcgagac cgatcagtta       180
     gttctctccc gtgcgtcggc cgtgtcggtt tagttgaaat taaatacagt ccgctacagt       240
     gaagtccgtg cgtagttatt tcccgtgcgt agttattccc cgtaaataaa ctgtcggtta       300
     gactgttaaa tcgagtgttt aaaccactat ccgaaacgca ctattccgcg agtgatttcc       360
     gtgggtgcac tagtccggcc agtgaagatt atacgtaaca                             400
//
ID   BEL-761_AA-I repbase;    DNA;    INV; 6265 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-761_;
KW   BEL-761_AA-I; BEL-761_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6265
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6265
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 262-262 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           807..6125
FT                 /product="BEL-761_AA-I_1p"
FT                 /translation="MALPHHKATLLSRRTTMIAALGRAEAFVDTYEAQRDQ
FT                 VQVPIRLEYLNNMWATLEEVQGQLEDLEDSDEGRQSNADVRADFEPRLFRI
FT                 KADLISKLPVLTQQARIPETSSHSSALSGLKLPTISLPEFDGDYMQWLGFH
FT                 DTFLALIHSNTEVPAIQKFHYLRAALKGEAAQLIESIAISSANYNLAWQTL
FT                 VDRYANDYLLKKRHLQALFDIQSAKRETAASLHALVDEFQRHTKVLGQLGE
FT                 PTDSWSSILEHLLCTKLPDDTVKAWEDHASTNNDPNYDCLIEFLQRRMRVL
FT                 ESILVNHHQPASASNGSTHTPKRPSQFRVSSCASTSSSGAKCPACNQEHLL
FT                 MRCAKFNRFSTSERQQLVSNKRLCHNCLKGDHIVRNCPSSYRCKHCNKRHH
FT                 SMLHSGDNSRPANEPSSSRTSMSTQAIPSSASSAVEPVVQSSKASESVPRV
FT                 VVSASAPQPREDVFLLTVLVKVVDAYGQDHFARALLDSASQPNLITDRLAR
FT                 RLHLKRNSVNVTIQGAGNLSKKVRESIFARIKSRNDSFECSVEFLLMDTVT
FT                 ADLPAQDISVKNWRIPDNLSLADPMFNKSQQIDMVLGAKHFHSFFPSTARL
FT                 QLADNLPILVDSVFGWVVTGSANIAQQQSTTPSVVAISMLTLEESMERFWK
FT                 TEELTVTDNYSMEERHCEDFYNSTTFRDETGRYIVRLPRKPDFDAMLGESK
FT                 TSALRRFDQLERRLDRDQKLKEDYHNFMKEYLALGHMRLVEKEDGNHSQTY
FT                 YLPHHPVIKEESTTTKVRVVFDGSARTSTGFSLNEALCVGPVVQDDLLTII
FT                 LRFLTYPVALVGDIAKMYRQVVLHPDDCPLQRILFRFSKDTPIETYELRTV
FT                 TYGLSPSSFLATRTLQQLAKDEGDKYPLAGPSIPKNFYVDDYIGGAHSIEE
FT                 AIQLRGELSELLVKGGFVLRKWASNRLEVLRGLEDDQIGTQSSLQFYPNES
FT                 IKTLGICWEPETDQLRFESQIQSRDDPPTKRSILSDIARLFDPLGLIAPVV
FT                 VTAKILMQELWSLSCDWDEPVPHTVRVKWETFRQELPKIACYRIDRYAFLP
FT                 EARIELHTFADASTSAYGACTYVRCENALGTVKIRLLASKSKVAPLKRLTI
FT                 ARLELCACVLASHLYYRIKESIGVHVTASYFWSDSAVCLYWLRAPPSSWKT
FT                 FVANRVSEVQHYTHGGKWNHISGTENPADLVSRGMTVEDFVKSKAWKHGPS
FT                 WLAKPLQSWPISNPPAVTEEILESKSAIVSVQTTASINPWFTRWSSYSRLL
FT                 HVVAYCLRFAAKSRSKSKTQPLASPKEIEQSTTSLTVEELARANALLIRFA
FT                 QQDAFKEEIKELQRGNPVPKRSTVRRLSPFIDAEGLLRVGGRLNLSLLPYQ
FT                 SKHPALLPKTHQFTRLIGEHFHQKLVHGGGRLLLSSIREEYWPLDGRRLVK
FT                 GIVRNCFRCSRHRPVPSQQQIGQLPMSRVIPRRPFSVSGVDYAGPLYLKPI
FT                 HKRASPAKAYLCVFVCFTTKAVHLELVGDLSTQGFLAALRRFIARRGIPSH
FT                 LHSDNGKNFEGAKRELAELFERFRSIDEQNTIASACSDQGIMWHLTPPKAP
FT                 HFGGLWEAAVKTAKRHIFRQLGNIKLSFESYYTVLHQIEAAINSRPLLPMS
FT                 DDPNDLAALTPAHFLIGTSMTALPDPDIQHTPTGALEHFQKLQLHVQKFWS
FT                 HWRTEYLQEMLKDTKPAVRNNEIQPGRLVVIIDDMLPTARWPLARIIELHP
FT                 GKDNLTRVVSLRTAKGVIVRPITKICLLPLPSPNPDDGQSNNPAANPMSTE
FT                 EE"
XX
SQ   Sequence 6265 BP; 1589 A; 1677 C; 1440 G; 1559 T; 0 other;
     taaattggtg ccgtgaccag gatattcgac gccataacgg atcctgaagc acgtgagacg        60
     cttgaccact gggcgctgcc atcttgatcg cgccatcccg cggggagttg tattgtttca       120
     aggctcgaat aatcgggcat caggtaatta cctgtccgat gcgtgtctgg ggtctcacag       180
     gtgccctcta gatttcccgt ttctctcttt acatgcgatt tcttcaacga gccggattcg       240
     attgttgcga taccactgtg gagcacatcc ttaggccagc tgtcgccatt gtaaggacac       300
     tccgtctggc ttttcgtatt catagactgt cgccatcacg ccgcggccat ccagcgccat       360
     tgtagtaggg tgcaagctgc tacccaagcc acgccatccc gccattacgt cccgagaagc       420
     tggtgacgtc atagaagcat agccgcttcc attgtcctgt tcgtgacacc attccgccgt       480
     tcctgattgc tgcgccagct ccgcacgtgt ctgcgataag ccggattcgc atcaagcgga       540
     tagtttcggg tgtttttcga tcgccgtcgt tcacgaacct acgagccacg acaatttcga       600
     ggatattttg cggattttca acgttcagca cgctcgctgt caggacctga tattttttga       660
     taattcaagg cacatactgc cttggaattg gtgagtacca ttccaagtga tcactaaatt       720
     tcccgccagg cctaccgtgg tcttttctcg tcgacagact cgtcatttgt acatcgtaca       780
     tcgccccctt tccccccgct tctgagatgg cgttgccgca tcacaaagca acgctcctta       840
     gccggaggac cacgatgatc gccgcgctgg gtcgggcaga ggcttttgtg gacacctacg       900
     aagcgcaacg agaccaagtg caggtaccca tccgactgga gtacctcaac aacatgtggg       960
     caacgttgga ggaggtgcag gggcagctgg aagatctgga ggacagcgat gaaggtaggc      1020
     aatcaaatgc tgatgtccgt gccgattttg agcctcggct ctttagaata aaagccgact      1080
     taatctccaa attacctgtt ctcactcaac aagctcgcat ccctgaaacc tcttcgcact      1140
     cttccgcttt gtctgggttg aagcttccta cgatctctct tcctgaattc gatggggatt      1200
     acatgcagtg gctagggttt catgacacgt tcttggcgtt gatccactct aacactgaag      1260
     taccagcgat ccagaaattt cattacctaa gagcggctct gaagggtgaa gcggcgcagc      1320
     tgatcgagtc catcgctatc agttcggcca attacaacct agcatggcaa acattggtag      1380
     atcggtacgc caacgactac ttgttgaaga agcgacacct acaggcattg ttcgacatcc      1440
     aatcagcaaa aagggaaacc gctgcatcgt tgcacgcgct ggttgacgag tttcagcgtc      1500
     acacgaaggt tttaggacag ctaggagaac cgactgattc ctggagcagc attctggagc      1560
     accttctgtg cacaaagctt cctgacgaca ctgtcaaggc ctgggaagat cacgcgtcga      1620
     ccaataacga tccaaactac gattgtttga tagagtttct tcaacgtcgc atgcgagttt      1680
     tggaatccat cttggttaat catcaccaac cagcatcagc atcgaatgga tcaactcata      1740
     cccccaagag gccgtctcag ttcagggttt catcatgcgc ctcaacttct agctctggtg      1800
     ctaaatgtcc cgcttgtaat caggagcatc tgctaatgag gtgtgcgaaa ttcaaccggt      1860
     tttcgacttc cgaaaggcag caactcgttt cgaacaagcg tctttgtcac aactgtctca      1920
     agggtgacca catcgttcgt aactgtccat cgagctatag atgcaagcat tgtaacaagc      1980
     gtcatcattc catgctgcac tccggcgaca actctaggcc agccaatgaa ccttcttctt      2040
     ctcgtacgtc catgtctacg caagccatcc cgtccagtgc atcctccgcc gttgaaccag      2100
     tagttcagtc ctccaaagcc tcggaaagtg ttcccagggt cgttgttagt gcttccgctc      2160
     cacagccacg cgaggacgtc ttcctgttga cagttttagt caaagttgtc gatgcttacg      2220
     gtcaggatca cttcgctcgt gcattactcg acagtgcttc tcaaccgaat ctcattaccg      2280
     atcgcttggc acgcaggttg catttgaaaa ggaactccgt gaacgtgacc atccaggggg      2340
     caggcaatct gtcaaaaaag gtacgtgaat cgattttcgc tcgaatcaaa tcgaggaacg      2400
     atagttttga atgcagtgtg gagtttctct taatggacac tgtgactgca gatctcccag      2460
     cacaggatat ctccgtcaag aactggcgaa ttccggataa tttatcgttg gccgatccca      2520
     tgttcaacaa aagccaacag attgacatgg ttctaggcgc caagcacttc cattcattct      2580
     tcccaagcac tgctcgtctt cagttggctg ataatcttcc gattctggta gacagtgtat      2640
     tcggctgggt cgttacgggt tccgcaaata ttgctcagca gcaatctact actcctagcg      2700
     tcgtcgcaat ctccatgtta acactcgagg aaagcatgga aaggttttgg aaaactgaag      2760
     agcttaccgt taccgataat tactctatgg aagaacgcca ctgtgaagat ttctataatt      2820
     ccacaacatt tcgcgacgaa acaggccgtt acattgttcg tctacctcgc aagccagatt      2880
     ttgatgcgat gctaggagaa tctaaaacaa gtgctctacg acgtttcgat caactcgaga      2940
     ggcgactcga tcgggaccag aaattgaagg aggactacca caacttcatg aaggagtacc      3000
     tcgccctcgg ccatatgcgc ttggtcgaga aggaagatgg aaatcactcc caaacttatt      3060
     atcttcccca ccacccagtg ataaaggagg agagtacgac cacgaaggta cgagttgtat      3120
     tcgacggctc ggcccgtact tctaccggct tctccctcaa cgaagccctc tgcgtgggtc      3180
     cggtggtcca agatgacctt ctcactataa tccttcggtt tcttacgtac ccagttgctc      3240
     tggtcggcga tattgcaaag atgtaccggc aggtagtact gcacccagac gattgccctc      3300
     ttcaacgaat cctcttccgg ttctccaagg acactcccat cgaaacctat gagctgcgta      3360
     cggttacata tggcttgtct ccatcatcgt ttttagcaac gcgtacgctt caacagcttg      3420
     cgaaggatga aggcgataaa tacccgttag ctggcccgtc tatccccaag aacttttacg      3480
     tcgacgacta cataggcgga gcacactcta ttgaggaagc tatccagctt cggggggagc      3540
     tatctgaact tctagttaaa ggtggatttg ttctgagaaa atgggcctca aatcgattag      3600
     aagttctacg agggcttgaa gacgatcaga ttggtactca atcaagcctg caattttatc      3660
     caaatgagtc cataaagacc ctgggaatct gctgggaacc cgagacagac caacttcgtt      3720
     ttgaatccca aattcagtct cgagacgacc caccgacaaa acgttccatt ctttccgaca      3780
     ttgccagact cttcgacccg cttggcctaa ttgcacctgt cgttgtcact gcaaaaatct      3840
     tgatgcaaga gctgtggtca ctctcatgtg actgggacga gccagtacca cataccgttc      3900
     gagtgaaatg ggaaactttc cgacaagaac ttccaaagat cgcatgctat cgaatcgacc      3960
     gttacgcgtt cttgccggaa gctagaatag agttgcacac atttgccgat gcttccacat      4020
     ctgcatacgg agcatgcact tacgtccgct gcgaaaacgc cctgggaaca gttaaaattc      4080
     gactgctggc ttcaaaaagc aaggttgcac cgctaaagcg gttgaccata gcaagactgg      4140
     agctttgcgc ttgcgtcctg gcatcgcatc tctactaccg catcaaagaa tcaatcggag      4200
     tccacgtgac agcttcatat ttctggtcgg attctgctgt atgcctgtac tggcttcgtg      4260
     cacctcccag ctcctggaag acctttgttg ccaacagagt atcagaagtt cagcattaca      4320
     cacatggtgg caaatggaat catatatccg gtacagaaaa ccctgcagat ctagtttcac      4380
     gtggaatgac tgtagaggat ttcgtcaaaa gcaaagcatg gaagcatggt ccatcgtggt      4440
     tggcaaaacc attacaatcc tggccaatct cgaatcctcc ggccgtcaca gaagaaatcc      4500
     tggagtccaa aagcgctata gtgtcagtgc agacaacagc cagtataaac ccatggttca      4560
     ctcgttggtc atcttacagc cgattgctcc acgttgtcgc atactgcctg cgttttgccg      4620
     ccaaatctcg ttcgaaatcc aaaactcagc cacttgcatc cccaaaagag atcgagcaaa      4680
     gcacaacgtc gttaactgtt gaagaacttg ccagagccaa tgctcttttg atccgctttg      4740
     cccaacaaga tgccttcaag gaagagatca aggaactgca gcgaggaaat cctgtaccaa      4800
     aaagatctac agtgcgtcgt ttatctcctt tcatagacgc ggaaggactc ttgcgagtag      4860
     gaggtcggct aaacttgtct ctactaccat atcagtccaa gcaccctgcc ctcctcccta      4920
     agacgcatca gtttacgcgt ctaattggcg agcacttcca tcaaaaactt gttcacggcg      4980
     gcgggcgtct tcttctatcg tcaatccgtg aggagtactg gcctctagat ggtcgtcgat      5040
     tagtcaaggg catcgttaga aactgcttcc gctgctcacg tcatcgtcct gtgccttcgc      5100
     agcagcaaat tggccagctg ccgatgtcca gagtcatccc acgccgtccc ttctctgtat      5160
     ccggtgtaga ttacgctggt cctctttacc tcaaacccat ccataaacga gcttctcctg      5220
     caaaagctta cctatgcgtg ttcgtgtgtt tcaccacgaa agctgtccat ctggagctag      5280
     tcggggacct atcaacccag ggatttttgg ccgcattaag acgcttcata gcaagaagag      5340
     gaatcccaag ccacttgcat tcggataatg ggaagaattt tgagggggcc aagcgtgaat      5400
     tggccgaatt attcgaaaga tttcgaagca ttgatgagca gaatacaatc gcttctgcct      5460
     gctccgatca agggattatg tggcatttga ctcctcccaa ggcaccacat ttcggtggcc      5520
     tatgggaagc agcggtcaaa actgccaaac gtcatatatt tcgccaacta ggaaacataa      5580
     aattatcgtt cgaaagctac tacaccgtat tacatcaaat agaagccgca attaattcac      5640
     gcccactcct gccgatgtcc gatgatccaa acgaccttgc cgcgttgacg ccagctcact      5700
     tcctcatcgg aacgtcgatg acagccttgc ccgacccaga catccagcac acaccgaccg      5760
     gcgcactcga acacttccaa aaactccagt tgcacgtcca gaagttttgg tcccactggc      5820
     ggactgaata tcttcaagag atgctgaagg atacgaaacc tgctgtccgg aacaacgaaa      5880
     tacaacccgg gcgactggtg gtcatcatcg acgatatgtt gccgacagcg cgctggcctc      5940
     tagcgcgtat catcgaactg caccctggaa aagataattt gacgcgtgtt gtcagcctac      6000
     gcactgcgaa aggagtcatc gtacgaccaa ttaccaaaat ttgtttgctg ccgcttccga      6060
     gtccgaatcc agatgatggt cagtcgaata atccagccgc caatccgatg tctaccgagg      6120
     aggagtaatt tgcttgagtt accacctgaa atgaaaagaa aaacgcaaaa tttgattgaa      6180
     atacttacct gtacgttaag atagaaaagc atttgttatt gtttacattt tttatgttga      6240
     acataatcgt tcaaggcggc gggta                                            6265
//
ID   BEL-761_AA-LTR repbase;    DNA;    INV; 522 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-761_AA-I;
KW   BEL-761_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-522
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-522
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 84-84 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 522 BP; 136 A; 118 C; 125 G; 143 T; 0 other;
     tgttggttca ctggccgcac tgcgtgagaa acctttttct cactgcgttt atggtgctag        60
     cgggcgcaac attagacgag ttttccagtc tttctggcaa ctcggtcgac ccagctgatc       120
     ggctcgtgag ccaaccagca tacttgccac ctcgccaagt atcattcgta atagctctgc       180
     aagtgaagaa agttgtatct aagctgtaaa gagaagaaat aaagtaaatt tagttaatgt       240
     gcaataaagt cagtcgtatg taaaaccagt ttgaaatcga tactcactag tgtgtgcaag       300
     tggaagaaaa tcgctgtcag tatcggagct attgtggtgt gaagtttagc tgctttttca       360
     acgatcatcc cggctgttcg ctgctgctgt tgctttccct gtttggattc accgcctagc       420
     tgccacccac ccactcgacg gtaaaaattg gtgctgattc aagtagggtg ctgcgccaat       480
     agtggacccg caaaaatcac aacgtagggg taagattcaa ca                          522
//
ID   BEL-762_AA-I repbase;    DNA;    INV; 6885 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-762_;
KW   BEL-762_AA-I; BEL-762_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6885
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6885
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 237-237 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           782..6076
FT                 /product="BEL-762_AA-I_1p"
FT                 /translation="MSSKQRKKLEEDLLKLKRVIAVRGVVEKFVAEYNHQR
FT                 DSNQVAVRLETLDRIYKEFQHVQSEVEMLDSEKFEEHIEVRTVFENRYCVL
FT                 KGFLLSKVANSGPAMNSTMINSFAHHTAASFHHRLPKIDLPKFSGDESRWI
FT                 SFRDNFLSMIHSNDDIPTVNKLHYLLQSLEGEARKPFESVDIQADNYASTW
FT                 DALMKRYDNKRYLKKELFRGLFDLPGMRKESAQELNTLVDDFQRHVKALAK
FT                 LGEPVDHWDTPLIFILSNKLDSATLRAWEQETRQQDEVTYAELIEFLGQHV
FT                 RMLKSVASDLQQRSQPTSNKVVGQFMKKPPVKSVANAATAESKTTVQQCTV
FT                 CKQDHQLVQCPTFTKLSIPQRRELVVQRSLCWNCFRPGHQARVCKSKFSCR
FT                 TCRARHHTMLHDQTAPLKKPSIPAATSNPSTHQPNPSATASAGTSGSANPP
FT                 EVSMAVHSKYSTVLLETVSLLIVDHRGREIPVRALLDSASMSNFITKKLAN
FT                 DLGIRRATVDVTVSGLGESVKKVKRQITATIKSKTNPFSTTLEFLVMKKPT
FT                 AHLPTITIDTSAWNMPNVPLADPHFHIPGMIDIVIGGECYHELHTGNRLSI
FT                 GDGLPLLVDTHFGWTVSGKTSTIPAVAPPVCYLSTVDQTLESSLQRFWELE
FT                 AVDHGPTHSAEEKKCEEIYANTTTRTHDGRYVVRLPRSDNPQVTLGESRQI
FT                 ATRRFYSLERRLERDATLKSSYHEFVEEYLRLGHMRKLDSVDDNSPHCYLP
FT                 HHPVFKESSTTTKVRVVFDASCKTSSGMSLNDTLLVGPVVQQNLDSIIIRF
FT                 RFHAVAIVADVEKMYRQILHSPDDQRFLRVLFRRRPSDPLDTYELLTVTYG
FT                 TASAPFLATRTLQQLAKDEGHNYPEAEEAVVEDFYVDDVLTGANNLESALE
FT                 KRRQLSAMLASAGLPLKKWASNVPEALADIPPEDLAIKPLHDLQDDQSVST
FT                 LGLVWDTRTDMLRFNVDLPLPAPVLTKRKVISYIAKIFDPLGLVGPAIATA
FT                 KLFMQRLWKLKXEDKSPYEWDRPLPDKLQDEWKQFHATLPILAEIRISRFV
FT                 SLPDVSKTELHFFSDASEVAYGACCYVRTLNAEEVKVQLLTSKSKVAPLAT
FT                 KHTIARLELCAAVLSTKLYHKVQQSIKTPAEVFFWTDSTTVIQWLKSPPSR
FT                 WKTFVANRVSTIQSSTDISSWYHVPGVENPADELSRGLLPTDLINQTRWWK
FT                 GPQWLSEFPNRWPNLNDPVEESATAIEEARKVTLTTIVAPEDQLPDQLFAR
FT                 YSTYTKLRRVVAYCLKYINALRAAARTSIKPSSSILSTADLEAADRALVRL
FT                 AQSQLYSEELTAGKNSLKSSSLKLLKPHVHDDGILRVGGRLSNAEIPDSVK
FT                 HPIVLSAKHPLAQLLAEHYHKVLLHAGPQLMLATMRQKYWVIGGRNLVRRT
FT                 YHRCVKCFRNKPILIQQSTADLPKSRVTPARPFAISGVDYCGPVFIKSPIR
FT                 NRAPTKAYIGIFVCFATRAVHIELITDLSTPAFLSALRRFVARRGLVREIH
FT                 SDNGTAFKGAANTLHRIFEMLKSSNADRNQIQTWCAERQIQWKFIPPRAPH
FT                 FGGLWEAAVKSAKHHLLREIGNISLPYEDMVTLLAQIEMCLNSRPLTPIPS
FT                 DPADLEVLTPGHFLVGSNLQAVPEPSCVDTPDNRLNHWQFTQKLFQRIWAR
FT                 WYPEYLAQLQSRATKGCKSPVPVRVGQIVVIKDENLAPVQWPFGRITQLHP
FT                 GKDGVVRVVTMKTANADGVVRPVAKVAILPIPTDVEQEQSTSNSS"
XX
SQ   Sequence 6885 BP; 1787 A; 1863 C; 1653 G; 1579 T; 3 other;
     ttggtccttc gagccggatc ggaggacaat ccaagccagg aatcagcgac ggaggcaagt        60
     tggcgccatc gtggtaagtg gtcaaaggcg gtgaccacac aaaaggtagg ccattcaatc       120
     ctttttcttt gtggagatag tttgggccta ttctctcacg gccgtgccaa tatttcgcgc       180
     cgattacgga ggcaaggaat ggcggcaaat tttgcatgct aatctgggga agattgcaca       240
     cagcgcatat cagtacggtg gaagccgaaa agcgacggca tataagagca ttttttatca       300
     tttcgcatga ttgtggtggc taattaggca aattgattgc cgtttttgat gatttgcatc       360
     tgcgcctatc cagtcgcaac tgaaattagt acaccgtgct gggtggtgga aataaaaagg       420
     cagggctcag tcaacaaggc aaagtgatag tggtggcgtt ttagcggaca cgcgtagcgt       480
     aaaaaagggt acatcgcgac gggaaggatt agtcaaatcg aattatcgca cccttttcgg       540
     tcgatcgcgt tcgtgtagag gtagtaagac gtgacgggaa ggagtatatc gttcgattgc       600
     ttggtacctc cgtcgtatat tcgcgtttgg gtagtgcatc gcgacgggaa ggagcaaatc       660
     gttcgatctt gtgctactca cgttcggttc gcgtaggaac ggcacaccgc gtcgggaagg       720
     agatttcgta tcgatttgtg tcgtttttcg tttttcgcgc gtggttcgag tggtgtgaaa       780
     gatgtcgagc aaacagcgga aaaagctaga agaggatctt ctgaagctga agcgtgtgat       840
     tgcggttcga ggtgtggtgg aaaagttcgt tgcggagtac aatcaccagc gggattccaa       900
     ccaagtggcg gtgcggctgg aaactttgga taggatctac aaggagttcc agcatgtgca       960
     aagcgaagtg gagatgctgg atagcgagaa gtttgaggag cacatcgaag ttcggactgt      1020
     tttcgagaat agatactgtg ttttgaaggg ctttttactc tcgaaggtag ccaacagtgg      1080
     accagcaatg aattcgacga tgatcaacag tttcgctcac cacacagcag ctagctttca      1140
     ccatcgactg ccgaagattg accttccgaa gttcagtggc gacgaatcaa ggtggatatc      1200
     gttcagagac aattttctgt cgatgatcca cagcaacgac gacattccaa ccgttaacaa      1260
     actccattat ctgttgcagt cattggaggg agaggcgaga aaaccgtttg aaagtgtgga      1320
     cattcaagcg gataattacg cgtccacctg ggatgcgttg atgaaacggt atgacaacaa      1380
     gcggtacctg aagaaagaac tgttccgagg cttgtttgat ctaccgggaa tgagaaagga      1440
     gtctgcacag gagctcaaca cgttggtaga tgactttcag cgacacgtga aagctctagc      1500
     caagctagga gagcctgtcg accactggga tactccactc atctttattc tctccaacaa      1560
     actcgactct gcaacactcc gtgcctggga acaagagacc cgacagcaag atgaagttac      1620
     gtacgccgag ctgatcgagt ttctcggaca gcacgtccga atgctgaaat ccgttgccag      1680
     cgatctgcaa caacgttccc aaccgactag caacaaggtg gtcggccagt tcatgaagaa      1740
     gcctcccgtc aaatccgttg cgaacgccgc cacagccgaa tcaaagacga cagttcaaca      1800
     atgcaccgtt tgcaagcaag atcaccagtt agtccagtgt ccaactttca ccaagctgtc      1860
     cataccccaa cgacgagagt tggtagtcca gcgaagcttg tgttggaact gcttccgccc      1920
     tggccatcaa gcacgagttt gcaaatcgaa gttcagttgc cgaacttgtc gagccagaca      1980
     ccacactatg ctgcacgatc aaacagcacc tttgaaaaag cccagcatcc ctgccgcaac      2040
     gtcgaatccg tctacacatc aaccgaatcc atccgcaaca gcgagtgcgg ggacctccgg      2100
     atcagcgaat ccaccggaag ttagcatggc tgtccattcg aaatacagca cggtcctact      2160
     ggaaacggtt tcgcttctca tcgtcgacca ccgcggcaga gaaatacctg ttagagcact      2220
     tctagactcc gcatcgatgt ccaatttcat cacaaagaag ttagcgaacg atcttggcat      2280
     ccgccgagct accgtagatg tcaccgtctc cggtctagga gaatccgtta agaaggtgaa      2340
     gcgacagatc accgctacaa tcaagtcgaa aacgaaccca ttttccacta cactcgaatt      2400
     tctggtaatg aaaaagccca ccgcacatct tccaaccatt accatcgaca cttcggcatg      2460
     gaacatgcca aacgttccat tggccgaccc gcacttccac attccgggca tgatcgacat      2520
     cgttatcggt ggagaatgct atcatgaact ccacacaggc aatcgcctat caattggcga      2580
     cggtcttcca ctgcttgtcg acacgcactt cgggtggacc gtttctggga aaacatccac      2640
     cattcctgcc gtagcaccgc cagtgtgtta cctatcgacc gtcgaccaaa ctcttgaatc      2700
     atcgcttcaa cggttctggg aactagaagc agtcgatcat ggccctacgc attccgcaga      2760
     agaaaaaaag tgcgaggaaa tctacgccaa caccaccact cgaactcacg atggaaggta      2820
     cgtcgtacgc cttccccggt ccgataatcc gcaagtcacc ctcggtgaat cacgtcaaat      2880
     tgccacccgc cgattctaca gccttgagag acgccttgaa agagatgcca ccttaaagag      2940
     ctcgtaccac gaattcgtcg aagagtacct ccgccttgga cacatgcgca agctcgattc      3000
     cgtcgacgat aattctcctc actgttatct gcctcaccat cccgtgttca aggagagtag      3060
     caccaccaca aaggtgcgcg tggtgttcga tgcctcctgt aagacctcct ccggcatgtc      3120
     gctcaacgat acactgcttg tcggccccgt tgtacaacag aacctcgact ccatcatcat      3180
     ccgctttcgt tttcacgctg ttgccatcgt cgctgacgtg gagaaaatgt accggcaaat      3240
     cctgcattct cctgatgatc agcgatttct ccgagtgctg tttcgccgac gaccgtcgga      3300
     tcctctcgat acctacgaac tactcacagt tacgtatggg acagcctcag cccctttctt      3360
     ggcaacacgc acgctacagc aactagcgaa ggacgaagga cataactacc ccgaagccga      3420
     ggaagctgtc gtcgaagatt tctacgtgga tgacgtctta acaggagcga acaacctgga      3480
     gtctgctttg gaaaaacgtc gtcaactatc cgcaatgctg gcatcggccg gtctcccgtt      3540
     gaagaagtgg gcttccaatg ttccagaagc gttagccgat attccaccag aagacttggc      3600
     gatcaaaccc ttgcatgatc tgcaagatga tcagtcggta tcaacccttg gactagtgtg      3660
     ggatacaagg accgatatgt tacggttcaa cgtcgacctt ccactaccgg cacccgttct      3720
     cacgaagagg aaagttatct cctacatcgc caagatcttc gatcctctcg gccttgttgg      3780
     ccccgcaata gctacggcaa agctattcat gcaacgcttg tggaagctga agmacgaaga      3840
     taagtcgccg tacgaatggg accgtccact accggataag ctgcaagatg aatggaagca      3900
     gtttcatgca acactcccga ttctcgctga aatcagaatt tcccgcttcg tatcacttcc      3960
     tgatgtttcc aaaaccgagc tacatttctt ctccgatgcc tccgaagtag cgtatggagc      4020
     wtgctgctac gtccgtacgt tgaatgcaga agaggtgaag gttcaactgc tgacatcgaa      4080
     gtcaaaggtg gctccactcg caacgaagca caccatagcg cggctcgaac tctgcgccgc      4140
     cgtgttatct acgaagttgt atcacaaggt gcagcagtcg atcaaaaccc cagcagaagt      4200
     ctttttctgg accgactcca ccaccgtaat ccaatggttg aaatctccgc caagccggtg      4260
     gaaaacattt gttgcaaatc gtgtttccac catccaatct tccaccgata tttcttcttg      4320
     gtaccacgta ccaggggtag aaaacccagc tgacgagctg tcccgtggtc tgctacccac      4380
     ggatctcatc aaccaaacca gatggtggaa aggcccgcag tggctttcgg aattcccgaa      4440
     ccgttggccg aatttgaacg atccagtaga agaatccgcc acagccatcg aagaagctcg      4500
     gaaggtaaca ctcaccacga tcgtcgcccc agaagatcaa ctaccggatc agctgttcgc      4560
     acgttattca acctacacca aacttcgccg tgtagtagcg tactgtctga agtacatcaa      4620
     cgccctacga gcagcagcac gaacatcaat caagccaagt agcagcattc tgtcgacagc      4680
     tgaccttgaa gccgccgatc gtgcactagt tcgtcttgcc caatcacaac tctactcgga      4740
     agagctaacc gctggcaaga attcgctgaa gtcctcctcg ctcaagctgc tgaagcctca      4800
     tgtccacgat gacggaatcc tccgtgtcgg tggacgcctt tcgaatgccg aaattccgga      4860
     cagcgtcaag catccaatcg tcctatctgc aaaacatccc ttggcacaac tacttgccga      4920
     acactaccac aaggttctgc tccacgccgg accgcaactg atgctggcaa caatgcgcca      4980
     gaaatattgg gtcatcggag gaaggaatct tgttcgtcgt acgtatcacc gttgtgtcaa      5040
     gtgcttccgg aacaaaccca tcctcattca gcagagcaca gcagatcttc caaaatctcg      5100
     tgtcactcct gcacgtccct tcgccatctc cggtgtcgat tattgcgggc ctgtgtttat      5160
     caagtcgccc atccgcaatc gagcaccaac caaggcmtac atcggcatct tcgtttgttt      5220
     cgctacaaga gctgtacata ttgagttgat tacggatctc tccacaccag ccttcttatc      5280
     ggcactccgc cgattcgttg cccgtcgcgg ccttgttcga gaaattcact cggacaacgg      5340
     gaccgccttc aagggagcag ctaacactct ccatcgaatt tttgaaatgc tgaagtccag      5400
     taatgcagac cgaaatcaga tccagacctg gtgcgctgaa aggcagatcc agtggaagtt      5460
     catccctccc cgcgcaccac actttggtgg attgtgggaa gccgcggtga agtcagcaaa      5520
     gcaccatctc ctgcgtgaaa tcggtaatat tagtctgccg tatgaagata tggttacgtt      5580
     gctggcgcag atagaaatgt gcctcaactc gagaccgttg actcccatcc cgtccgatcc      5640
     agctgattta gaagtgctga cacccggtca cttcctggtg ggatcaaacc ttcaagccgt      5700
     tccagaacca agctgcgtcg atactccaga caaccggttg aatcactggc agttcaccca      5760
     gaagctgttc cagcgtattt gggctcgttg gtatcccgaa tacctcgcac aactccaatc      5820
     gcgtgcaacg aaaggttgta agtcaccagt cccggtccgg gtgggccaaa ttgtagtcat      5880
     caaggacgaa aatctggctc cagtgcagtg gccgtttgga agaatcaccc agttgcatcc      5940
     agggaaggac ggagttgttc gcgtcgttac gatgaagact gccaatgccg atggcgtagt      6000
     gaggccagtt gcgaaggtcg caattctgcc tattccaacg gatgttgaac aagaacaatc      6060
     aacaagcaac agttcctgat tctccaaaga ccggtagagc tgtccggaac atgctcaacg      6120
     cgcatttgaa gcgctatcag gtgattagcg tttcaataat ttatcatgta tccgttccat      6180
     ctaccgggtc ttccgttgtt tctagttcgt ttatgccctc gtaattcatc aaccaatcgt      6240
     cgatcgtcgc tgcagttcgc caggccagcc tgatcatcat caaatcctca agaagtccag      6300
     caatcaccaa ccctgaagta cctcaagtat gctgtagcta caaagaccgg tagagcagtc      6360
     cgaaactggc tcaatgcgca taaaaggcgc aatcaggtga ttagcgttcc tttacttcta      6420
     gccagctccg ttcgatctac cgggtctttt gttgtccaca ggttatcctc catcaatcct      6480
     catccgttga atcgtcactc gctcatctct acagttcagc aaatctggtc cggagcctac      6540
     aaagatcggt agagcagtcc gaaactgctc aacgcgcaaa ctgagcgcaa tcaggtgatt      6600
     gtcgctccaa tatccttagt taacccgtcc gatctaccgg atctttcgta gttccagatc      6660
     attgttccat acatctccat cggatctcgt cttcaatcag ccaggccgaa tcatcaacca      6720
     gtcgtgaggg aatgaatgac tccattcacc aatgccttcg ttcggtcaag cacgtgaaga      6780
     aaagtcgatc gttggagcag ccgatgagag agcacgagaa ggagagagta atccagagaa      6840
     gagagtaggg attgaaacaa cccgattgtt tcaaggtggc cggaa                      6885
//
ID   BEL-762_AA-LTR repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-762_AA-I;
KW   BEL-762_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-633
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-633
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 85-85 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 633 BP; 181 A; 128 C; 147 G; 177 T; 0 other;
     tgatcggtat tcaccgacca tggagtagat gaaatttgta aatagtgtac atataactaa        60
     ccctaacatt aagttgaaat taattaagcg cattaacaca caattgaatt cgaaccggtc       120
     taatcttcaa ccatgctcac gagaacgaag tgagagtata attactcagc aatggtcaag       180
     ctgaccacct accgcatcat cgttatactg atgaccagtt agttgaaaat atatctcggt       240
     agcaaacaga agtacggtcg gtcgtctatt gtgtcgtttt cattcctctg ttcattgatc       300
     gcaagtgtgg aatatagttc tgtggaaaaa ttgcaaacct atttctatcg atccgaaatc       360
     agttgtggcc aaggggcaat aaaatcgttc gatcaattac gtgtcggttg gtgctaactc       420
     gaacgttgtg cgtgggcgat ctaagcgatc gaagaatatt tgaagggttg agtgcttgtg       480
     acatcgttct gccttcggtg aagaagggga agaatcaccc caaggtggct agtggtgcta       540
     atttgtggct tacgtttcct gtgcgccgtt cgacattcga acgggaagta aaaccttcga       600
     tcccggcaaa atacagagtc cccggctcgt tca                                    633
//
ID   BEL-763_AA-I repbase;    DNA;    INV; 6882 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-763_;
KW   BEL-763_AA-I; BEL-763_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6882
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6882
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 238-238 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           651..6056
FT                 /product="BEL-763_AA-I_1p"
FT                 /translation="MADLRRWTKKERLLRDVVESISEFVQNYDVNRDKGSV
FT                 DARLKKLDEVYNDFCEVRVNIECILEEDEELTETDEKEEDTVKRKALQQKM
FT                 DESNRKVMKDFANNYFNLKNMLQAFQACPVASTSASSASLVQQVPLSSMRV
FT                 KLPELKLPIFRGSLMEWVTFRDTFQNLIVDNPHLSDIDRFTYLRSSLAGEA
FT                 LEQIASIDLTANNYSIAWKSLESRYENKKLLVKSHLDALFAVQPMKKETFD
FT                 SLNHVINEYDKHLQMLDKLGERTINWSTLLVHMLSSKLDATTLRLWETEHR
FT                 SKEVPKFDKLMEFLKNHRTVLRSITGETSGPSEQKKAPRVSNSYAGVQSTC
FT                 SLCGEGQHPLFQCKRFKFMKVDDRRSTVKSAQLCFNCLSRGHVAKACTRGT
FT                 CRVCGQRHHSMLHLKTNESSDNQSTPQSNKRFQQNSPNPQSTQTPTTSPVN
FT                 KQSPNTLQSSSNSTNLPSTISTPAISNPQSFSPLATDIPNVVLSVNVPKNP
FT                 RSVLLATAVVVLEDQFGNTTQARALLDSGSQLCFISEHASQRLRFKRSREA
FT                 LSISGIGQAAKKCKQSVFARVRSRVSSFSGEETFYVLPSVTLNLPPRRVDA
FT                 SKLRLPEDIVLADPFFTEPSNIDMIIGAGLFFDLLRNEKINLGENGPVAQN
FT                 TTLGWIVCGNLPDSPDMRRPQVANMCTENLDELLTRFWELETCKTDSILSL
FT                 EEYACEKFFDRTTIRDATGKFVVTLPKKDYLIQQLGDSRSTATKRFLSLER
FT                 RLTANPDLKRMYRDFIHEYLQMGHMEETVGDEEDAAVPEYFIPHHCVIKPD
FT                 STTTKLRVVFDASCPTSSGVSLNNALMVGPTVQDDIISIVLRFRFHKIAIV
FT                 ADVEKMYRMVQQQLADRKLHKILWRDNENDPIRVFQLNTVTYGTASAPYLA
FT                 TKCLKRLAELDGNKFPEAAKILYNDFYVDDMMSGVDDVEEGKKICSDIQQL
FT                 LQGGGFNLRKWSSNCSAVLENIPEELQDDRTSFELDDSSATIKTLGLVWEP
FT                 RLDVFRFKIPDWNTSEICKRTVISDLARIFDPIGLLGTVIVSAKIFVQNLW
FT                 KQKIPWDEPLSPELQALWLEFRTSLTKLETLQIPRWIAFRKECLSVELHGF
FT                 CDASTKAYGACLYVRCTHFDGTVTSNLLIAKSRVAPLAELGKKRKKLTIPR
FT                 LELSSAVLLAHLYEKVSASIKVSAQSYFHTDSMIVRYWLSSQPSRYQMFVA
FT                 NRISEVQHLTRAGTWRHVAGTENPADALSRGIPPAELEHDSLWWHGPPWLR
FT                 EDKNRWPNTQEVVLEDLDEASLEEGSTVAVVATTSTASEIFGLRSTLHRLE
FT                 KLVAWLLRFKHNTLRSRGTKITGPLTLKEREAALLQLVKLSQRECFAQEIN
FT                 DLERKGEVRPTSRISALYPQWIDGVLRVGGRLENARISMERKHPILLDKNH
FT                 PLTVMVMRRYHFEHLHAGPQLLVASVREKFWPLSARSLARKIVHKCITCFR
FT                 NKPTLQDQLMADLPAERVTPAPPFLRVGVDYCGPFAVRYPNRTKISVKHYA
FT                 AIFVCLVTKAIHIEMVADLTTQGFVAALKRFVARRGKPTLIMCDNGTNFVG
FT                 ARRELDELAVLFKNQQSQQSIALGAADIGIEFKFIPAKSPNFGGLWEAAVK
FT                 SMKQHLRKTIGLKTVTPEELNTVFAQIEACLNSRPLTQMSSDPNDLNVLTP
FT                 GHFLIQRPLTAVAEPWLQHVPENRLSRWQQAQEFVQRIWSRWSTQYLSDLH
FT                 NRTKWTQRRNNLFVGSMVLIKEDNLPPLKWLLGRVTHIHPGADGNVRVVTV
FT                 RTKDGSVVRAISKICILPISDNESSQTPGEN"
XX
SQ   Sequence 6882 BP; 1886 A; 1613 C; 1684 G; 1699 T; 0 other;
     tatttatggt ccttcgaacc ggatgcggtc gaagtgaaga agatttggtg cttcgaagtg        60
     tggaagtaac agcgtgttcg agccaacgtg tactccaccg agcggcattg ttccagattc       120
     tttgtaagcc tttatctcag cgaacgtgcc attgttcaac gctacaacgt agttggtgcg       180
     acggtgcggt ggcaaggcga ctatccagct tctttgttcc tgattcccgg ctcatctgtg       240
     gtgcatcaaa ttcgctactc cgaatgcatg cagcgatcaa ttgacgagct agcttctatg       300
     atccagccaa cggatagatc agccagataa gtatttccca aaggtttgtc tgtagtggcg       360
     attgaaagca tgatcagtcg tcttacatcc cgacactgat gccaagttgc atgtggcttt       420
     gaaacgtaaa ataaacgata aattgcatgc tttgcgtttc ttttggaata agtggttgat       480
     ttgtctgctg gattgagtct gctttgaggt tgattggcca atttcgatcg atcgatacat       540
     ttctgtctgt tgtttgggtt ctgtcaatcg cgatccgttt tgccacgcgt tcgggtaact       600
     gtggagttga gtcaagtgca gtgtagccgt gcaagtgcac agtggtcaga atggcagatc       660
     ttcggagatg gacgaagaag gaaaggctgt tacgagatgt agttgaatcg atcagtgagt       720
     ttgtgcaaaa ttatgatgta aaccgtgaca agggttcagt ggacgctagg ctcaaaaaac       780
     ttgatgaagt ttataatgac ttttgtgaag tgagagtgaa cattgagtgc atcctcgaag       840
     aagatgaaga attaaccgaa acagatgaga aagaagaaga tacagttaag cggaaagcac       900
     tgcagcagaa gatggatgag tcgaaccgca aggtcatgaa ggattttgct aacaactact       960
     tcaacctgaa gaatatgctg caagcatttc aggcctgccc ggtggcaagc accagtgcat      1020
     cgtcagcttc gttagtgcag caagtccctt tgtcatcgat gcgagtgaaa ttaccagaac      1080
     tcaagctgcc aatttttcgt ggctctctga tggaatgggt aacattcaga gatacgttcc      1140
     agaatctgat tgtagataat ccccatctgt cggacattga taggttcacc tatctacgtt      1200
     cgtcgttagc tggagaagcg cttgaacaga tagcttcgat agatctgacg gcaaacaact      1260
     attccatagc gtggaaatcg ttagaatcac gctatgagaa taagaaacta ttggtaaaat      1320
     ctcatctcga tgcattgttc gcggtgcaac ccatgaagaa ggagacgttt gattcactca      1380
     accatgtgat aaatgagtac gacaagcacc tacaaatgct ggataagctt ggggaacgga      1440
     caatcaattg gagcaccctc ttagtccata tgctatcgag caagctggac gcaacaacgc      1500
     ttcgtttatg ggaaacggag catcgctcga aggaagttcc caagtttgat aaactgatgg      1560
     aattcctgaa aaatcatcgt acagttctac gatcgatcac cggagagacg tccggtccat      1620
     cggaacagaa gaaggcacct cgggtaagca acagttacgc cggtgtgcag tccacctgtt      1680
     cgttgtgtgg tgaaggacag cacccgctgt tccagtgcaa gcggttcaag ttcatgaagg      1740
     tcgacgacag gagaagcact gtgaaatcag ctcagctttg cttcaactgt ttgtcacgag      1800
     gtcacgttgc gaaggcctgt acacggggaa cctgtcgcgt ctgtggtcag cgacatcatt      1860
     ctatgttgca cttgaagacg aacgagtcgt cggataacca gtcaactcca cagtcgaaca      1920
     agcgtttcca acaaaactca ccgaacccac aatcaacaca gacacccaca acctcaccag      1980
     tcaataagca atcacccaat actctccaga gttcctcaaa ttccacaaat cttccatcca      2040
     caatctccac tccagctatt tccaatccgc aaagtttttc gccacttgcc acagacattc      2100
     ctaacgtggt actctctgtt aatgtaccca agaatccacg atcggtttta cttgccactg      2160
     cggtcgtggt tcttgaagac cagtttggga atactactca agctagagca ttgctagata      2220
     gcggctctca gctttgcttt atttcggagc acgcgtcgca acgtttgaga ttcaaacgat      2280
     cacgcgaggc actttcaatc agcggtattg gtcaagctgc aaagaagtgc aagcaatctg      2340
     tttttgcacg agttcgttct cgtgtctcgt ccttctccgg agaggaaacc ttctatgtgt      2400
     tacccagtgt gacgctgaat ttgcccccca ggagggtaga tgcatccaag ttgcggcttc      2460
     ctgaagatat tgtgctggct gatccattct tcaccgaacc gagcaatatt gatatgatta      2520
     ttggagcagg acttttcttc gacctgttac gcaacgagaa gatcaatcta ggagaaaatg      2580
     gacctgtggc gcagaacacc accctcggct ggattgtttg tggaaatttg ccggatagtc      2640
     cagatatgcg gagaccccaa gtggctaata tgtgcacgga gaatctggac gaacttctga      2700
     cacgcttctg ggaattagag acgtgcaaaa cggacagcat actatcgttg gaagaatacg      2760
     cctgcgagaa attcttcgat cgtacgacaa tacgagacgc aactggaaaa tttgtggtca      2820
     cgctcccaaa aaaggattat ctcatccagc agctcgggga ctcaagatcg acggcaacga      2880
     agcgcttcct atccctcgag cgtcgattga ctgcgaatcc tgatctgaag cgaatgtatc      2940
     gtgatttcat acacgagtac ctccaaatgg ggcatatgga agaaactgtt ggagacgaag      3000
     aagatgcggc tgtcccggaa tatttcattc ctcatcattg cgtcatcaaa cccgatagta      3060
     cgaccactaa attacgggtt gtgtttgatg catcgtgtcc aacatcgagt ggcgtctcgc      3120
     tgaacaacgc actgatggta ggacctacag tgcaggacga cataatatct atcgtccttc      3180
     gttttcggtt ccacaagatt gccatagtgg cagatgtaga aaaaatgtac agaatggtac      3240
     agcaacagtt ggcggacaga aaactgcaca aaatcttgtg gcgggataat gagaatgatc      3300
     ctattcgagt gtttcagcta aacaccgtca cttatgggac ggcttctgcg ccgtatttgg      3360
     ctaccaagtg cctcaaacgg cttgcagagc tagacgggaa caaattccca gaagcagcca      3420
     agattctcta taatgatttc tatgtcgacg acatgatgtc cggagttgat gatgttgaag      3480
     aagggaagaa gatatgtagc gacattcagc aactcctgca aggaggaggg ttcaatctgc      3540
     ggaaatggag cagcaactgc tcagctgtgt tggagaatat acctgaagag ctccaagatg      3600
     atcgaacctc gtttgagctg gacgactcaa gtgcaacaat caaaacgcta ggtctcgtgt      3660
     gggagcctag gttggacgtt ttccgattca agatacctga ttggaatacc tcggagatct      3720
     gtaaacgtac ggtcatatct gatttagctc gaatatttga tccaatcggg ctacttggaa      3780
     cagtgatcgt ttctgctaaa atattcgtcc agaatctctg gaaacagaag attccttggg      3840
     acgaaccgtt atcacccgaa cttcaagctc tgtggttgga atttagaaca agcctgacca      3900
     agcttgaaac attacagatt ccaaggtgga tcgcatttag aaaggaatgc ctttcagtag      3960
     aactccacgg cttttgcgat gcatcgacga aagcctatgg agcgtgctta tatgtgcgat      4020
     gcacacattt cgatggcact gtcacgtcca acttgctaat agcgaaatct agagtcgctc      4080
     ctctggcgga actaggaaag aaaaggaaga aactcacgat ccctcgctta gaactctcct      4140
     cggctgtatt attggctcat ctctacgaaa aggtgtctgc tagcatcaag gtttcagcgc      4200
     aatcgtactt ccataccgat tccatgattg ttcggtattg gctatcttct caaccgtcac      4260
     gatatcaaat gtttgtcgca aaccgaatat cggaagtaca acatcttacg agggccggaa      4320
     catggagaca tgtagctggt acggaaaatc ctgcggacgc tttatctcgt ggcattccgc      4380
     cagctgaact ggagcatgac tcgctatggt ggcatgggcc accttggtta agggaagaca      4440
     agaatcgctg gcccaacaca caagaagttg tactggaaga cttggatgaa gctagtcttg      4500
     aagaagggtc tacggtggca gtcgttgcta ccacatcaac ggccagcgag atattcggcc      4560
     tacgatcaac tctgcaccga ttggagaaac tagtagcatg gttgctacgg ttcaagcata      4620
     acacactccg ttctcgtggt acgaagataa cggggccgtt gactctgaag gaacgagagg      4680
     cagcattatt gcaactggtg aagctgtcac aacgggagtg tttcgcccaa gagattaatg      4740
     acttggaacg taaaggagaa gtgcgaccga cttctcgcat tagtgcccta tatccacaat      4800
     ggattgacgg cgtactccgg gttggcggcc ggctcgaaaa cgctcggatt tcgatggaga      4860
     ggaaacatcc tatactacta gacaaaaatc atcccttgac tgtcatggtc atgcgacgct      4920
     accactttga gcatttacac gcaggccctc aactgttggt ggctagtgta cgagagaaat      4980
     tctggccact cagtgcccgt agcctcgcca ggaagatcgt acacaagtgt atcacttgtt      5040
     tccggaacaa gccaactttg caagaccaat tgatggccga tctgccagct gaacgtgtca      5100
     ctccagctcc accctttttg cgagttgggg tcgactattg tggtcctttt gcagttcgct      5160
     atccaaatcg aacaaaaatc tccgtcaagc attacgctgc aatctttgta tgccttgtca      5220
     caaaggcgat tcatattgaa atggtggccg atctcacaac ccaaggattc gtggccgcat      5280
     tgaagagatt tgttgcgaga cggggaaaac caacgttgat catgtgcgac aatgggacga      5340
     atttcgttgg tgcacggcgg gagcttgacg agctcgctgt cttattcaaa aaccagcaat      5400
     ctcagcagtc cattgcgcta ggagcagcag atatcggaat cgaattcaaa ttcattccag      5460
     ccaaatcccc aaactttggc ggtttgtggg aggcggctgt aaagtcaatg aaacagcatt      5520
     tacggaaaac aattggcttg aaaacagtca cacccgaaga attgaacacg gtgtttgcac      5580
     aaatcgaagc gtgtctgaat tctagaccac ttacccagat gagcagtgat cctaatgacc      5640
     ttaatgtact cacccctgga cattttctta ttcagcgacc gctgacagcg gtggccgaac      5700
     cttggttgca acatgtccca gaaaacaggt tatctaggtg gcagcaagct caggaatttg      5760
     tccagcgaat ttggtccagg tggtcaactc aatacctgtc ggacctccat aacaggacca      5820
     aatggacgca gcggaggaac aatttgttcg tcggttcgat ggtcctaata aaggaggaca      5880
     atctacctcc acttaaatgg ctgcttggac gagtaactca cattcacccg ggtgcagacg      5940
     ggaacgtcag agtcgtcacc gtgaggacga aggacggaag cgttgttcgg gcaatttcga      6000
     aaatatgcat cttgcctatc agcgacaatg agagttcgca gacgcccggg gagaactagg      6060
     ccttcctcat cggaggcgca ggggcgcctg cgggagccac ccggctcccg cactccagtt      6120
     aagtgttgcg ttgtatatat atttcaaaaa actcaaggaa tgttttgtcc tcatagccac      6180
     ctccgtccgg aggccgccgg ccttccagcg aagtcaccct ctattacgcc ctgttgatgg      6240
     ataccgcaca cctgactgct caaatcacct cttcagttgc tcaaccaatc gcactcaaca      6300
     gcgcatccaa tgcatcaatg gaatcaaacc cacttcgcag tgtccgtctg ccttcagtac      6360
     aactcgttgg tcaccaagag ctgcgtacat caagaattta ttaactacca aaccccggtc      6420
     aaccaggcga tcgcatcatc atcggcgcag gagcgcccgc ggaggcgcgc aagcctccgc      6480
     gacagggaag tctttgtaag cttgttaaat atttgtaaaa aagcgtctct catatgtttc      6540
     agttgtccat tccaaccgcg gcgagcctgc agctcgagca aaatctgcga tgtcgacccg      6600
     atgtactcgg tacgagagga tgttttcgac aacggcgatc gagacgaaga cccgcgtgaa      6660
     gcagctgatg aaatcataca acagacggaa ggaaaccgcc gagcgaagtg ttccgtatgt      6720
     tccgtatcac caataagatc tacccttgtt tccacgaata gaatgttaaa cgttaatcta      6780
     gtctgtaaga catgtgttag atagtagttg ttaaatattt aaagttagca aacatattag      6840
     tcgacaatgt tgaaattccg cgtatttcaa ggcggccgat ta                         6882
//
ID   BEL-763_AA-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-763_AA-I;
KW   BEL-763_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-327
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-327
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 86-86 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 327 BP; 98 A; 66 C; 62 G; 100 T; 1 other;
     tgttaattag tttagtttag tttattcaaa caatttcgtt atcaatccca ctctgcaaca        60
     atcatcatcc tcaatgatga ttgtgagata gatatagcac tcactctcgc agcatccgta       120
     ttaccagcat atgaagatca tacactgtaa tcgggagaat tgagaagagt ctkcgatcat       180
     gtaaaattga atgtttcgtc agtcagaaat aaagtgtgct catgagcagt cgcgtttgta       240
     ttagccgccg tgtatcattt gtccgcgttc cgtagtgcat cagtccgaat atctaaaatc       300
     cagtgacctt agatcgaaga agctaca                                           327
//
ID   BEL-764_AA-I repbase;    DNA;    INV; 6976 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-764_;
KW   BEL-764_AA-I; BEL-764_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6976
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6976
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 155-155 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6976 BP; 1793 A; 1853 C; 1609 G; 1721 T; 0 other;
     taaaaaatgg tccttcgagc cggatagttt ggcgtcggtc gaagtgtcgt agtaaagtcg        60
     gttcgcagta gcgcgaaata agtttcgggt cgtgattagt gcaaattaac tcgactatcg       120
     catcgcggtt gatctcagtt tgcgccggtc aaagtgagcc aacgtgatat caagtgatcg       180
     tattgtctgt gagacattct gttctgttcg cgtggacaga aaaagtgtgc caaagtgcaa       240
     gggactatcc tccgaactgt gggactgtga gtgaggcaga agcagtaaat tagattactg       300
     tccttccgtg tgatcgaatc agactgaacg aacgatagtg caacgctccg ttaagtgcta       360
     gtgaagcgta tcctgaaatt gaacgggaaa agaaaaaagt gatctgtccg cataggtcgg       420
     caaaaggaag aaagctgagt gttcgagtcc caagtgcccc agaaatcgcg ccaagtgaga       480
     gtgtgacccg cgtggcttga gcttcctgac cgcgtggagt tggcttggct tgggttcatc       540
     cacacaaagg ggtcagtcta caaaggaccc tctgacaaag gggatacact gcgctccgtt       600
     cccccacacg ctgatgccta ctgtaagtag attgcatgta cgatactaac cctttcatcg       660
     gatgaacttt tgcgttctgt ttgttcggtg acaaagaaat tgagctttgg tttgaggatt       720
     tgcgaatttc taacacgagg tggtggcaag caaatcgctc gtgatattag ctgttggctg       780
     taaagccata attggactcc agcactttct gcaattttgc gttcagaatt tttgggctcc       840
     ggttgggcga cgacgatatg gcgccggctt cgaagtcgct tcggaggcaa gagcggttct       900
     gcttagatac catgcagaat ttgctacaat ttgttcaatt ctatcaggaa gacagagata       960
     agtttttgat tgaaggttgg agaaatagat tgaacgaaac tttcgggcaa ttccagacaa      1020
     ttcgtttgaa gctggagttg attgaagaag atgaagagga agtagagaat gaagaggaca      1080
     atcgcaaaac acgtgacgag tttgagaaaa actacgtgaa agtgcttgga ttcttggcta      1140
     ccgctgagcg tagggcaaac cctccacccc cgccgatcgc gcaagccgtt gcttcgggat      1200
     cggaaaacgc aaatcttaac cctttccaat ctagaatcaa gcttccggag gttaaacttc      1260
     cttcgtttga tggtacaatt accgactggc tgcctttccg ggactcattc aagagtctca      1320
     tcgattcaaa ccctaatttg tcagactttg acaaactgtc ctaccttgta ggctcactaa      1380
     cgaaggaagc taagcgtatc gttgaggcaa tcgaaataac ttctgcgaat tattcggttg      1440
     cttgggacct gctccaaaag cgtttcgaca ataagaagct cgttgtgaaa acgtatcttg      1500
     atgcgctttt ctcggtcgaa ccagtcaagc gagaatgtta cgattcactc gtgcgactga      1560
     tcgatgattt cgaacggaac ctgaaaatgg ttcaaaagat ggaaatagac actgaaggct      1620
     ggagtgtcct cttagcgtac atggtgtgtg ctcgcttaga ttcgtcgact ctgaggcaat      1680
     gggagaatca tcaccagtca acggacgttc ccgcttacaa ggatctccta cagttcctca      1740
     gaaatcacgc tatggttctc caatcaatct caccgatcaa atctcgctcc tctgattctc      1800
     caccaactgc gccccgcaca caaaaaccga aaattagcca catccattct gtcgttggct      1860
     ccccgtcaaa accatgccca ttctgcaagc aggctttgca ctccgtcttc aagtgcgaag      1920
     tttttcgtaa ctcttcggta gcagaaaggt acgagttagt gaagaagaaa ggcctttgta      1980
     tcaattgtct gtcgcccgag caccaaatca aaaactgcac atctagtgct tgtcgtgtat      2040
     gtgcacaaaa acaccacaca atgctacacc aacaagcaaa caatcgctat ccaaaccaat      2100
     ctcaagctca gaaacaaact caaagtccac ccactcccga acaaacgcaa tcccattctg      2160
     cgaacgctag gaaccctcca aatggttcaa atcagcctcc tccgccagcc accccggtct      2220
     cttcagctcc agtcgctcct ccgtcgctca gccactgctc cacctcattg gttgccaacg      2280
     tccgccggat tccatcaacg gtcttgctgc agacagcttt agtaaaggtc gtcgattcca      2340
     gtggatactt actgtgggcc agagctctac ttgatccagc ttctcagttg aacgttatct      2400
     ccgaacggct ggtccagcgg ttacaagcac gaagaattaa ggatcatcat accattggtg      2460
     gcatcggagg ctccacgaca acagcgaatc actctgtcct cttaagcatc ttgtcccatt      2520
     gtacggattt cagtgcagat ctgaaattct acatcctcgg tgaaataaca cgcgatcttc      2580
     catcaaacgc tgtggatgtt tccacctggg aatggccgtc cgacattgta cttgcagatc      2640
     caaaattcca tgagcctgcc tccgtggaca tgatcatcgg aatggaagtt tactacgatc      2700
     tactactgga aggattagta aggcttggtc caggaaaacc agtactccag aataccactc      2760
     ttggttgggt cgtttccggt agagttggtc taagtcaaca ttccaaccca accgtcacct      2820
     ctcacgtctg cagtacactc tccatagaag attcgctagc caggttttgg gaaatcgagt      2880
     catgccactc ttcaagcacg atgtctgtcg aagaatcggc atgcgaagca tacttcgccg      2940
     caaccaccac cagagatgag acagggcggt ttgttgtagc gttaccaaag aagccggaag      3000
     tcctgaagca ccttggaaaa tcctacgata tagccaaacg ccggcttcta tcattgtcac      3060
     gccgtcttga agccaaccca tcactgaagg ctccatattc ggcatttatc gaagaatatc      3120
     ttcggctggg acacatggag gaagtgtttc agaatactcc gagtacttct gcttcctatt      3180
     ttctaccaca tcactgcgtt gtccgtccgg atagtcttac gacaaaacta cgtgtcgttt      3240
     tcgacgcatc gtctgccacg gacacgggca tctccctaaa cgatgcactg atggttggtc      3300
     cagtggtgca ggaagacctc gtctgcatta ctatgcgttt ccgaatgtca aaaattgcca      3360
     ttacttccga catcgagaag atgtatcgcc aaatttgggt gactcccggc gatcgcccac      3420
     ttcagcagat tctgtggcaa gaaaactccg gagatccgat taggaccttt cagcttaaga      3480
     cagtaacgta cggaacctca tccgccccat acctagccac caaatgcctt caggagctag      3540
     ccaagcacgg tcaatcgtct catcctgctg ctgcagtagt tgtcgccaac gatttttata      3600
     tggacgacat gattagtgga gtcgacaatg cggacgaagg gaaggtgcta tgtaatcagc      3660
     ttctcgagtt gctgaattca gcaggcctta gcctacgtaa atggtcgtcg aactcctccg      3720
     aagttctcga gaacattcca tacgagctgc gtgatgaacg tgctgttctt gatctcgatt      3780
     cactctcttc cgtcaaaacc ctaggtctaa aatggactcc agctaccgat catctcggtt      3840
     tccatgttcc taagtggaat gaagaaggag ttatcaccaa acgtatagct ctctcggatt      3900
     ctgctcgcct ctacgaccct ttaggactcg tgggtcctgt catcgtactc gcaaagtgtt      3960
     tcatgcaaga gctttgggag aataagaaga cctgggacga acctttagaa gaagaccttc      4020
     agcaacgatg gctgcatttc agaaaggagc ttgtcacagt ggaaaccatc gctgttccac      4080
     gatgggtcat tccaatttct caacccatca ttctcgaggc acacggtttc agcgacgcct      4140
     cccaacgagc gtacggagcc tgtatctatc tccgagcagt gtccgctagt ggggacattt      4200
     ctgtcaacct tctcacctcc aaatcgaagg ttgctccttt gggaaatagc aagaagcaga      4260
     aaaggatcag ccttccccgc ctcgaacttt ctggtgcctt gttgcttagc caccttttcc      4320
     aaaaggtcca gcaaagtttg aaaacgaact tgaaatgctt ctactgggtc gattcaacta      4380
     ttgtgctaca ttggctggct ggagctccgt cccgctggaa aacgttcata gccaacagag      4440
     tctccgaaat ccagcatcta actaaacaag gagtttgggg tcacgttgct gggctggaaa      4500
     accccgctga cattatctct cgaggaatgc tgcctgctca gttgaaggaa acagacctct      4560
     ggtggcacgg tccaatctgg cttcaacaga cgtccaggtt ctggccgtcg cttatacgta      4620
     cgtccgacga tgatttcctc gccggagatc tagaggaacg atcgatcgct cttccagtgc      4680
     acagtcagcc tagcaatccc atcatcgccc ttcgatcttc tttcccagca ttactccgtt      4740
     tggtggctct tctgcgccgt tttctccaca actgcaagcc tgccaaccgg cagcatcgaa      4800
     tcactggatt catccaagct ccagaactac aagaagcaag cagcaatctt gtccgtatag      4860
     cacaagccga acgtttcaag aagatctccg agccctaagc gatggcggtg aagtcaagcc      4920
     gaactcaaaa ttgaaaaatc tccgtcctat catcatcgat gggattttgc gcatcggtgg      4980
     ccggcttcga aacgcgcctg tttctgaaga ccgcaagcat ccgataatcc tcgccacaca      5040
     ccatccgcta acagagctga tcatggtctc ctaccatcaa cgattgttac acgctggacc      5100
     acagctactg attgcgagtg ttcgcgagaa attctggcct ctacgtgtac gcaacctggc      5160
     gcggaaagta gttcacagct gcttgaagtg ctttcgttgc aagcctactg tatctgaaca      5220
     gataatggga gatttacctt cggagcgcgt gactccagca tttccgttcc tgaacaccgg      5280
     cgtcgactta tgcggaccgc tcttctatcg ctatcctttg aggaaatcaa atccagtcaa      5340
     atgttacgtt gccattttcg tatgcctagt gacgaaagcg atacacgtcg agcttgttgc      5400
     cgatctttcg actgccgcgt tcatcgccgc tttaaagcgc tttgtagcgc gtcgtggcag      5460
     accagccgtg attgaatgcg acaacgctaa gaattttctg ggagcctcac gagcgcttgc      5520
     cgagctcaag gagcaatttt gctcacagca acacaaacac gctgtcacta gtcactgtgg      5580
     tgaagagggc atctttttca agtttatccc tccaagatct cccaatttcg gcggcctctg      5640
     ggaggccgcg gtcaaatctt tcaagaagca cttcaaggcg acaatcggga ccacagtgct      5700
     tctaaaagac gaactcgaaa cggtattgac ccaaatcgaa agctgcttga actcccgtcc      5760
     tttgacgcag ctgacttccg aaccagagga cctggaaatc cttaccccgg gtcacttttt      5820
     ggttcatcgc ccactggtct ccatcccgga accgtcgtat gaaactaccc tccaaccgtt      5880
     tggaccgtta ccgacagacc caagaattcg tccggcgcat ctggaagcac tggagtaccg      5940
     aatacctctc tggcctacat ccccgcacta aatggactcg tttgcgggac aatatcagca      6000
     tcggcactat ggtgctccta aaagacgaaa acctcccgcc actcaagtgg ctctatggcc      6060
     gtgtgaccca gatttttcgc ggtgacgatg gcaatgtccg ggtggtctcc gtccgaacca      6120
     aagatggcga atatcggcgc gcaatctcga agatttgcgt gttgccggta cagcaaccag      6180
     ctcctgctgg tgataacgag cttctctccg agatgtaaca gcatgcttcg cgctgcggcg      6240
     cttttgtttg tccaaccaac taacatttga acaaaactaa tgctcctttt ttgttcccga      6300
     tcaactgcga caacggcatc gacgctctcc gagactggct tcctgacgtt ctggtcatcc      6360
     gacgacaact ggcctccaag actggctgct ggcctcatct acgaccgaca accggctgaa      6420
     cactcccttc gaactcgtca aatgtcccaa aggatggtct tcaggctaca tcgacttagt      6480
     tccgaaggtg agttgttccg gttttacacc gtcaatctat tgcatactac atcaattccg      6540
     tcccgaggta caccaatacg ccaatatgcc aaatctgagg tcagtcatcc tatcgccaaa      6600
     tcgtcgagaa ccagcgccag atgtgaagcc atttcctacc cagccaacca acgcaagcag      6660
     tcggtaatcc accggccgag aagtgttggt attccgccaa ccgagaagat cagtaccccg      6720
     ctgatcatga agagccgtca agcagccgaa caagcagagg tcgatgtcct gtttatcaac      6780
     aacccgaaga ggtcaacacc cccagcgatg cacttttact gcattcgtcg tatccgagca      6840
     gacatcaaca aaccgaagaa gcacgtgtta cgaagatatg tttatgttct caccttgtct      6900
     aaataacgac cggcccacct agcagtttta gattagggtt tgtttgaaaa gtaaactttt      6960
     caacggtggc cggcta                                                      6976
//
ID   BEL-764_AA-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-764_AA-I;
KW   BEL-764_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-327
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-327
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 158-158 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 327 BP; 111 A; 67 C; 57 G; 89 T; 3 other;
     tgttaattat tgaattaaag ccaattgaat tgaaccaccc taatgtggta ctagattagg        60
     agagctagtg atccctttcg atcatatata ggaacgataa acggtccctt tccaagaacc       120
     gaaagatagc gccaacgagc gcaggtagat ttttatagat cmtgagcatc tcatataakc       180
     ctatacaaga gccagatcag ttttagtmgc aaataaacct ttaaaccttt cgcatcaacc       240
     cctatatctt tgtgatatcg aagagagcaa taaagtcaat cagttcgaac accgagaccg       300
     gaccaaatta gttaatcttt cgttaca                                           327
//
ID   BEL-765B_AA-I repbase;    DNA;    INV; 6555 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-765B_;
KW   BEL-765B_AA-I; BEL-765B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6555
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6555
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 154-154 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6555 BP; 1638 A; 1787 C; 1540 G; 1590 T; 0 other;
     aagtggtgcc gtgaccagga taggtcgcat tggacgcggc ctcgaaccga ccattgtact        60
     ccgaagcgac gactcggaaa gcgcccatcg ccattgtgga ccggcggaac aattgatgaa       120
     tgcgaggtat tgaagtgctg tcgccattgc actgatttgc gattatggtc aattgaggac       180
     agaagctgta ggaattataa aatacaaggc ctagaacttg ccttgagcag gttagtctct       240
     gtccaactcc ctcatctgcc tcgctggtgc gctctagatt ccgttttccg ttctctttcc       300
     gagcaatttc gttgctgcat ccatcagggg ttcccgaccg ttggtgtacg atcctactgt       360
     ttgattgtcg aagaagtttc ggcaatccac tactatattc ctgcggacga tctacgagtc       420
     ccaaccatct ttggacaagt tcatcccgga ctgacgaatt ctccacgacc gactaattga       480
     gaatttgttg ggcgaaagtt atccgcgctg aaagaagttg ttcctgtcaa caaaatatat       540
     gatacaaggc tcaaagctag cctctggcag gttagtagaa ttccaatagc accccacacc       600
     ccgctggtgc gcttaaggtt gcgcttttct cttttccacg gttcatcgtc agtgcttccc       660
     aacggccggc agacggccac ctacgagttt cccgaagagt tccgttcgtt gcatccattc       720
     cgtggccatc actaccatca accgtggttc ccaaccgttg atacacggtc atccatgctt       780
     cctctggacg attttggcac acttaaattg tgagcagtgc agacgttctt catactcggt       840
     tcgttgaact ctctgttgca acaaccattc atcaaccctg gcaatattgt gcgctcgact       900
     acgtcgatcg cgaccatcca aaagttggcg ataaactttg ttcctgttgg ctgattaata       960
     atacaaggca aatttttgcc ttggaaaagg tacgtacctc tccaagtgct ttacatttcc      1020
     atcccagggc tactggtctt aatatttgcc aggaaatcat cgctcttcgt tccttccact      1080
     gcacaaacgt cggcgtacgt gagtgccttc caaaatggcg accacgcagg agaaccggca      1140
     attagtactg cggcgcacgt cgctgttggc ttcgctagga cgagcaaggc aattcttgga      1200
     ggcctatcaa gatccgaggg acaggctcga ggtgcagcta cggatcgacg atctggacag      1260
     cattcgacag aagtttgagg atatccagga aactctcgag ggcatcgagg aatcgagcga      1320
     aggcgttcaa ctgaatgcgc aggtacgttc tggctttgag gagtcgtatt ttcaaataaa      1380
     ggctggtctg ttgtccaaat tacctccgtc taaccctgct ggcggagctc ccaatcccct      1440
     cccccctacg gtttccacta gtttaaaggg tctcaagctt ccgacgataa ccttgcctga      1500
     gtttaacggc gattataagg agtggttggc gttccacgac acttttatgg cgctgattca      1560
     ttcaaaccag gacgttccag acatccagaa gttccactac ctgaagtcat cggtttctgg      1620
     tgaggcctcc cagatcatcg aatcgttcgc gatcagtgca gccaattatc aactggcctg      1680
     gcaagctctg gttagcagat acgcgaatga gtacctcctc aagaagcgac acctgcaggc      1740
     aatgctggag attcaacgcg tgaagaagga gacaacatca gcgttgcatg ggatcgtaga      1800
     cgacttcgag cggcacacca aaatcctgcg gcaacttggt gaaccagttg acacttggag      1860
     caccatactg gagcacctac tctgcgtccg gctcccggat gatacactta aatcctggga      1920
     ggatcatgcc gctactacca acgatccgtc atacaaatcc cttattgagt tcctgcatcg      1980
     ccggattcga gtattggaat ctgtttctgt gaatcatgtc caccctccgc cgcagattgt      2040
     taactcctcc cacgtttcgg caattcgaaa atcgtcacag gtgaaaccgt cgaccactac      2100
     agctatcgaa agtcctccga gcaaatgcta cgcttgcgat cagcgtcatc cgttggtgaa      2160
     gtgtttgaag ttcgagaaga tgagtgcttc aaatcgccta gcgttagtga attccaaccg      2220
     actatgcttg aactgctttc gagctgatca tttttcaagg aactgcacat ccaaatacac      2280
     atgcaggtac tgcaaaaggc gtcaccattc ccttcttcac gatggtttcg gcgacaacgt      2340
     tccatctcgt tccgatcaaa tgccatccaa tgctgcacgc gcatctacga atgtgaactt      2400
     ggcctctgtg aatgacgatt cctcgcaccc cgtcctgtcg gccgctacgt ccatacagcc      2460
     ggctgagagt acctgtagtc taccactcca agacgtcgag aaaaacgttt ttatgctgac      2520
     agcgatagtc atcgttgttg accgttacgg tacagagcac ttagcgcgtg ctctcctcga      2580
     ctctgcgtct caacccaacc taatcaccga gaagatggct caacttctac ggttgaagcg      2640
     aagcaagacg aatgtcctcg tccaaggcat cggggcgcaa tcacaaaacg ccagagaggc      2700
     tatccacgct caaatccgat ccagaaagga gaacttttct gtaaacgccg agttcttggt      2760
     tcttccccga gttactccag aacttcccgc atccgatgtt ccagttgacc actggaatct      2820
     tccttcgaat ctgttcctag cagatccgca atttcataag cgagcaccga tcgatatgat      2880
     tctcggaatc gagcatttct tcaccttctt ccaaacggtt aacaaaatca acctccccaa      2940
     accgcttcca acgctggtcg acagtgtttt cggctggctc gtatccggat cgatgggcaa      3000
     gaattcttcc gcagggcgaa atcctccgca ttccatcgtc gcggtctccc tgttcaacct      3060
     ggaggagagt gttgaacgat tttggaaggt cgaagaacta gaatttcggt cggattattc      3120
     gctcgaagag aaacagtgtg aagagttgtt ttcgactacc acgtcgagaa acgcggaggg      3180
     gcgatacatt gtgcgtttac cccagaaacc taacttcgtc gagcttattg ggaattccaa      3240
     ggcaatggca ctccaccgat tcaatctgct ggaaagaagg ctcgatcgaa atcccgaatt      3300
     gaaggaggag taccacaagt ttatggcgga atatctctcc cttggacata tgcggcgtat      3360
     tcaagaggac gacgaactcc attccgcagc atactacctt ccgcaccacc cagtagtgaa      3420
     agaggcaagc acgacaacga aggtacgagt tgtcttcgat gcttcggcaa agacctctac      3480
     aggcttctcc ctcaacgaag cactgttggt aggtcccgtg gtgcaggatg acctcctttc      3540
     aatcatcctt cgttttcgga cgtttccggt agcgctggtt ggtgatatcg caaaaatgta      3600
     ccggcaggtc ttgcttcatc cggatgatac accataccaa cgaattctat ggcggtttga      3660
     cgtggaggac tccatcggga gttatgagct gttgacggtg acttatgggc tgagtccgtc      3720
     ttcctttctt gccactcgca ctctacaaca gttagccgtt gatgaagggg actcttatca      3780
     gctgggtggg tcagctcttc ggaaaagttt ctacgtggat gacttcattg gcggcgcgca      3840
     atccattgaa gaagcgattc aactaagaca agaaatgagc gaactcctta agaaaggcgg      3900
     gtttgaactc aggaagtgga cttccaacca attaccggtc ctagccggtc tccaacctga      3960
     cgaaatcgga acacagtcat cgatcaagtt cgacgaaaac gagacggtaa aggcgttagg      4020
     catctcttgg gaacccgagt ccgacaatct ccgtttcgat tccaaaatcc aacagcacaa      4080
     gggtgtgcct acgaaacgtt caattttgtc cgggatttcc cagcttttcg accccctagg      4140
     gctgatatca ccaattatca ttaagggtaa gatgttgatg cagaaaattt ggctgctacc      4200
     ctgctcctgg gacgacccag ttcccgagga catcgcaaga tcatgggaag aatatgtgtt      4260
     gcagatccca aaggtggcaa acttccgcgt cagtcggtac gcattgctgc cgaactccag      4320
     cgttcaactt cacacgttca ccgacgcctc ggagttagcc tacggagcat gcacctacgc      4380
     cagatgtgtg gatccgtccg gaatggtccg aattcagctg cttgcatcga aatctcgagt      4440
     ggcgccatta aagaagatca cgttgcctcg tttggaactg tgtgcggccg acataggcgc      4500
     aaaactccac tgccgtatcg ttgaagcact tcaaatcacc atcaccagct cgcacttctg      4560
     gtccgattcc actgtgacgc tccaatggct acgagcaccc cctagcactt ggaaaacctt      4620
     cgttgcaaat cgggtgtcag aaatccaagg tttaacccac ggtgctttct ggaatcacgt      4680
     tgcaagtaag gacaatcctg cggatttaat atcccgcggc atgaacgtga acgatttcct      4740
     ggtcagcgaa ctgtggaaga aaggtccaaa ttggctgtcc aacaccgaag aggaatggcc      4800
     ggtcacgaaa ctccctcagt atcccgagca tgggaaggaa cgacgtaagc tgattgctgc      4860
     tgtagtcaga actcaatcca cagtcaaccc ggtgttcgca atattctcct cctatgaacg      4920
     tctacttcgt gtgactgcct acgttctgcg tttcatctcc aacgttcggt gcaaaacccg      4980
     cacgcaacca ctcccttcca ctggtccgct tcccagtatc accctggctg ttgaacacct      5040
     agccatcgcc gaacgtacct tagtccagct tgcacaggca gatgcattcc atgaagaaat      5100
     ccgtgacctt caaaacaaca aggccgtcgg aaagcgatcg tcaactcgtc tgcttgctcc      5160
     atttcttgat cctgagggaa ccattcgggt aggggggaga ctcagacttt cagaccagcc      5220
     ttttctagcc aaacatcccg ctctgctgcc aggcaaccat cctctgtcac gcctgatcac      5280
     caaatcctac cacctgatgc tcattcacgg tggcggccgc ctaactctcg cggcaatgcg      5340
     ggagaaattt tggccaatcc atggacggcg actcgtccgc agtattctcc gtagctgcta      5400
     ccgttgcgcc cgagccaatc ctgtcccaat gagccaacag atcggacaac taccgactca      5460
     ccgaatcacg cccagtcgac cgtttgctgt tactgggatg gactttgccg gaccggtgta      5520
     cctgaaaccg gtacacaagc gagctgcagc aacgaaggcg tacatatgca ttttcgtctg      5580
     cttctgcacc aaagcggtgc atatagaatt ggtgagcgac ctctcaaccc aagctttcct      5640
     atcggccctc cgtcggttca tagcacgtcg tggacgtcca accgacctct attccgacaa      5700
     tgggaagaat tttcaaggcg ctgccaacga actggaggaa gtttaccgtt tgctacagga      5760
     cgaaaaccta agggaccaga tcacaaccga ccacaccagt gaacaaatca cgtggcactt      5820
     cactccacct aaggccccac acttcggagg gctgtgggaa gcagcggtga aggtggccaa      5880
     aagtcaattg taccgacagc tcggtacgtc caaactgtgt ttcgaagaca tgtctaccat      5940
     tcttgcacaa atcgaggcga gcatgaactc acgccccatc gtgcctctaa gcgaagaccc      6000
     gaatgacatc gctgccctca ctccggcgca ttttttgatc ggtggcccaa tgtattcact      6060
     gccagaagtc agcctacaac aaactcctct caatcggctc gttgaccatc accagaaact      6120
     tcagggtatc taccagcact tctggcatca ctggaggcaa gagtacttgc aagaattgca      6180
     gcgcgatacg aagacttgcc atcccaatac cgaaatccaa ccgggacgac ttgtcgtttt      6240
     gatggacgaa caccagatgc cggtgaagtg gccgcttgcc cgaatcgttg ctgttcatcc      6300
     tggcgccgac aagctagtac gagttgtgtc attgcgaact agcaaaggag tcatcgtgcg      6360
     accaatcaca agaatatgtt tgcttccgat tcagcatcca gaagaagata cagtgatcga      6420
     acatgtagac gatcataaat aagtttacta ttgtttagct ttaagtttat tcgttgaatg      6480
     tttgtaccta tttacttagc ctcaattaat tagggatcaa aaattgaaaa tcatattttt      6540
     tcaaggtggc ggcga                                                       6555
//
ID   BEL-765B_AA-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-765B_AA-I;
KW   BEL-765B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-487
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-487
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 111-111 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 487 BP; 123 A; 106 C; 111 G; 147 T; 0 other;
     tgttgcagct acagcataat tttatcgcta agggcgatca agtgttttcg cgcaattgac        60
     cgaaccctct cactacatca gcagtagtat ataactgaaa cacattgttt gatagtgtag       120
     tagatcggct gcccatggtg agccgaataa gttttgtgct gctctgtacg ttcagtttcg       180
     atttatccac tatccatgca aggtcgccgt cgtggtccgt ttgtagatat aaaactagag       240
     aaatacacgt tttacgtttt gcggtaataa agtattttgt attaaagtga accggttttg       300
     tgcttagctt ttcgagttag gagaagtgcc ttaagcgatt gtcctacgtg gcccccgttt       360
     tccttgatcc attctgaacg tagattggac atctcggatg gtactccgga cgcagacttc       420
     gctgtaaata ccagccaagg atctcgggca cacaccaggt acgggaatcc tatatttgga       480
     cccaaca                                                                 487
//
ID   BEL-765_AA-I repbase;    DNA;    INV; 6619 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-765_;
KW   BEL-765_AA-I; BEL-765_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6619
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6619
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 174-174 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6619 BP; 1643 A; 1819 C; 1567 G; 1590 T; 0 other;
     aagtggtgcc gtgaccagga taggtcgcag aggacgcggc ctcgaaccga ccattattct        60
     ccgaagggcg caagcgacga ctcggaaagc gcctatcgcc attgtggacc ggcgaaataa       120
     ttaattcaat gcgaggtatt gatgtgccgt cgccattgca cttgctggat agctacgtgg       180
     atacgcgatt gtggaaatca tcctcaagga cagaagctgt taagatcata aaatacaagg       240
     cctagatctt gccttgagca ggttagtttc tgtccaactt cctcatctgc ctcgctggtg       300
     cgctctagac tccgctctcc gttctctttc cgagcaattt cgttgctgca ttcatcaggg       360
     gttctcgacc gtcggtgcac ggtcctattg tcctactgtc gaagaagttt cgatcacccg       420
     ctaccgcact cctgtggacg atcaacgagt tccaatcatc tttgggcaag cccatcaagg       480
     actgacgaat tctccacgac cggctaattg ggaatttgtt gggcgaaagt tagccgcgct       540
     gaaagaagtt gttcctatca acgaaataat tgatacaagg ctcaaagcta gcctctggca       600
     ggttagtaga attccaatag taccccacac cccgctggtg cgcttaaggt tgcgcttttc       660
     tcttttccac ggttcatcgt cagtgcttct cgacggccgg cagacggcca cccacgagtt       720
     tcccgaagag ttccgttcgt tgcatccatt ccgtggccat cactaccatc aaccgtggtt       780
     cccaaccgtt ggtacacggt catccatgct tgttctggac gattttggca cactgaaatt       840
     gtgagcagtg cagacgttct tcatactcgg ttcgttgagg tctccgttac aacaaccttt       900
     catcaaccct ggcaatactg tgcactcggc tacgtcgatc gcgaccatcc aaagttggcg       960
     ataaactttg ttcctgttgg ctgattatta atacaaggca aatttttgcc ttggaaaagg      1020
     tacgtacctc tccaagtgct tcacatttcc atcccagggc tactggtctt aatatttgcc      1080
     aggatatcat cgatctacgt tccttccact gcacaaacgt cggcgtacgg gagtgccttc      1140
     caaaatggcg accacgcagg agaaccggca attagtactg cggcgcacgt cgttgttggc      1200
     ttcgctagga cgagcaaggc aattcctgga ggcttatcaa gatccgaggg acaggctcga      1260
     ggtgcagcta cggatcgacg atctggacag cattcgacag aagtttgagg atatccagga      1320
     aactctcgag ggaatcgagg aatcgagcga aggcgttcaa ctgaatgcgc aggtacgttc      1380
     tggctttgag gagtcgtatt ttcatataaa ggctggtctg ttgtccaaat tacctccgtc      1440
     taaccctgct ggcggagctc ccaataccct cccccctacg gtttccacta gtttaaaggg      1500
     tctcaagctt ccgacgataa ccttgcctga gtttaacggc gattataagg agtggttggc      1560
     gttccacgac acttttatgg cgctgattca ttcaaaccag gacgtaccgg acatccagaa      1620
     gttccactac ttgaagtcat cggtttctgg tgaggcctcc cagatcatcg aatcgttcgc      1680
     gatcagtgca gccaattatc aactggcctg gcaagctctg gttagcagat acgcgaatga      1740
     gtacctcctc aagaagcgac acctgcaggc aatgctggag attcaacgcg tgaagaagga      1800
     gtcaacatca gcgttgcatg ggatcgtaga cgacttcgag cggcacacca aaatcctgcg      1860
     gcaacttggt gaacctgttg acacttggag caccatactg gaacatctac tctgcgtccg      1920
     gctcccggat gatacactca aatcctggga ggatcatgcc gctactacca acgacccgtc      1980
     atacaaatcc cttattgagt tcctgcatcg ccggattcga gtattggaat ctgtttctgt      2040
     gaatcatgtc caccctccgc cgcagattgt taactcctcc cacgtttcgg caattcgaaa      2100
     atcgtcccag gtgaaaccgt cgaccactac aggtatcgaa agtcctccga gcaaatgcta      2160
     cgcttgcgat cagcgccatc cgttggtgaa gtgtttgaag ttcgataaga tgagtgcttc      2220
     aaatcgccta gcgttagtga attccaaccg actctgcttg aactgctttc gagctgatca      2280
     tttttcaagg aactgcacat ccaaatacac atgcaggtac tgcaaaaggc gtcaccattc      2340
     cctccttcac gatggtttcg gcgacaacat tccatctcgt tccgatcaaa tgccatccaa      2400
     tgctgcacgc gcctctacga atgtgaactt ggcctctgtg aatgacgatt cctcgcatcc      2460
     cgtcctgtca gccgctacgt ccatgcagcc ggctgagagt acctgtagtc tcccactcca      2520
     agacgtcgag aaaaatgttt ttatgctgac agcgatagtc atcattgttg accgttacgg      2580
     tacagagcac ttagcgcgtg ctctcctcga ctctgcctct caacccaacc taatcaccga      2640
     gaagatggct caacttctgc ggttgaagcg aaacaagacg aatgttctcg ttcaaggcat      2700
     cggggcgcaa tcacagaatg ccagagaggc tattcacgct cagatccgat ccagaaagga      2760
     gaacttttct gtaaacgccg agttcttgat tcttccccga gttactccag aacttcccgc      2820
     atccgatgtt ccagttgacc actggaacct tccttcgaat ctgttcctag cggatccgca      2880
     gttccacaag cgagcaccga tcgacatgat tctcggaatc gagcatttct tcgccttctt      2940
     ccaaacggtg aacaaaatca gcctacccaa accgcttcca acgctggtcg acagtgtctt      3000
     cggctggctc gtatccggat cgatgggcaa gaattcctcc acagggcgaa atcctccaca      3060
     ttccatcgtc gcggtctccc tgttcaacct ggaggagagt gttgaacgat tttggaaggt      3120
     cgaagaacta caatctaggt cggattattc actcgaagag aaacagtgtg aagagttgtt      3180
     ttcgactacc acgtcgagaa acgcggaggg gcgatacatt gtgcgtttac cccagaatcc      3240
     taacttcgac gagctcattg ggaattccaa ggcaatggca ctccaccgat tcaatctgct      3300
     agaaagaagg ctcgatcgga atcctgaatt gaaggaggag taccacaagt ttatggcgga      3360
     atatctctcc cttggacata tgcggcgcat tcaagaggaa gacgaactcc attccgcagc      3420
     atactacctt ccgcaccacc cagtagtgaa agaggcaagc acgacaacga aggtacgagt      3480
     tgtcttcgat gcttcggcca agacctctac aggcttctcc ctgaacgaag cactgttggt      3540
     aggtcccgtg gtgcaggatg acctcctttc aatcatcctt cggtttcgga cgtttccggt      3600
     agcgctggtt ggtgatatcg ctaaaatgta ccgacaggtc ttgcttcatc cggatgatac      3660
     accataccaa cgaattcttt ggcggtttga cacggaagac tccatcggga gttatgagct      3720
     gttgacggtg acttatgggt tgagtccgtc ttcctttctt gccactcgca ctctacaaca      3780
     gttagctgat gatgaagggg attcttatcc gctgggtggg ccagctcttc ggaaaagctt      3840
     ctacgtggat gacttcattg gtggcgcgca atccattgaa gaagcgattc aactaaggca      3900
     agaaatgagc gaactcctta ggaaaggcgg gtttgaactc cggaagtgga cttccaacca      3960
     attaccggtc cttgctggtc tccaacctga cgaaatcgga acacagtcat cgatcaagtt      4020
     cgacgaaaac gagacggtaa aggcgttggg catctcctgg gaacccgagt ccgacaatct      4080
     ccgtttcgat tccaaaatcc aacagcagaa gaatgtgcca acgaaacgat caattttatc      4140
     cgggatttcc cagcttttcg accccctagg gctgatatca ccaattatca tcaagggcaa      4200
     gatgttgatg cagaaaattt ggctgctacc ctgctcctgg gacgacccag ttcccgagga      4260
     catcgcaaaa tcatgggaag aatatgtgtt gcagatccca aaggtggcaa acttccgcgt      4320
     cagtcggtac gcattgctgc cgaactccag cgttcaactt cacacgttca ccgacgcctc      4380
     ggagttagcc tacggagcat gcacttacgc cagatgtgtg gatccgtccg gaatggtccg      4440
     aattcaactg cttgcatcga aatcccgagt tgcgccatta aagaagatca ctttgcctcg      4500
     tttggaactg tgtgcggccg acataggcgc aaaactccac tgccgcatcg ttgaagcact      4560
     tcaaatcact atcaccagct cgcacttctg gtccgattcc actgtgacgc tccaatggct      4620
     acgagcaccc cctagtactt ggaaaacctt cgttgcaaac cgggtgtccg aaatccaagg      4680
     tttaacccac ggtgctttct ggaatcacgt tgcaagtaag gacaatcctg cggatttaat      4740
     atctcgcggc atgaacgtga acgatttcct ggtcagtgaa ctgtggaaga aaggtccaaa      4800
     ttggctgtcc aacaccgaag aggaatggcc ggtcacgaaa ctccctcagt atcccgcgca      4860
     tgggaaggaa cgacgtaagc tgattgctgc tgtagtcaga actcaatcca cagtcaaccc      4920
     ggtgttcgca agattctcct cctatgaacg tctacttcgt gcgactgcct acgttctccg      4980
     tttcatctcc aacgttcggt gcagagcccg cacgcaacca cttccttcca ctggtccgct      5040
     tcccagtatc gccctggctg ttgaacacct gaccatcgcc gaacgcactt tagtccagct      5100
     tgcacaggca gatgcattcc atgaagaaat ccgtgacctt caaaacaaca aggccgtcgg      5160
     aaagcgatcg tcaactcgtc ttctcgctcc gtttcttgac cctgagggaa ccattcgggt      5220
     aggggggaga ctcagacttt cagaccagcc ttttctagcc aaacatcccg ctctgctgcc      5280
     aagcaaccat cctctatcac gcctgatcac caaatcctac cacctgatgc tcattcacgg      5340
     tggcggccgc ctaactctcg cggcaatgcg ggagaaattt tggccaatcc atggacggcg      5400
     actcgttcgc agtattctcc gtagctgtta ccgttgcgcc cgagccaatc ctgtcccaac      5460
     gagccagcag atcggacaac taccgaccca ccgaatcacg cccagtcgac cgtttgctgt      5520
     tactgggatg gactttgccg gaccggtgta cctgaaaccg gtacacaagc gagctgcagc      5580
     aacgaaggcg tacatatgca ttttcgtctg cttctgcacc aaagcggtgc atatagaatt      5640
     ggtgagcgac ctctcaaccc aagctttcct atcggccctc cgtcggttca tagcgcgtcg      5700
     tggacgtccg accgacctct actccgacaa tgggaagaat tttcaaggcg ctgccaacga      5760
     actggaagaa gtttaccgtt tgctgcagga cgaaaaccta aggtaccaga tcacaaccga      5820
     ccgcaccagt gaacaaattg cgtggcactt cactccacct aaggccccgc acttcggagg      5880
     gctgtgggaa gcggcggtga aggtggccaa aagtcaattg taccgccagc tcggtacgtc      5940
     caagctgtct ttcgaagaca tggctaccgt tctcacacaa atcgaggcaa gcatgaactc      6000
     acgccccatc gtgcctctaa gcgaagaccc gaatgatatc gctgccctca ctccggcgca      6060
     ctttttgatc ggtggctcaa tgcattcact accagaagtc aacctacagc aaattcctct      6120
     gaatcgcctc gtcgaccaat accagaaact tcagggaatc taccagcact tctggcacca      6180
     ctggaggcga gagtacttgc aggaattgca gcgcgatacc aaaacttgcc aacctaacac      6240
     tgacatccaa cctggacgac ttgtcgttct aatagacgaa catcagatgc cggtgaggtg      6300
     gccgctggcc cgtattgttg ctgtccatcc tggcgaagac aagctggtac gagtagtatc      6360
     gctacgcact agcagaggaa tcatagtgcg accagtcacc agaatatgcc tgctgccatt      6420
     ggaaacgacg tttgaaccca agctacagtc atcagatgaa gcaccagtag aagaagtttg      6480
     aagagataag tttgatgatt ccaatttgtt catgtaatta tgattttcgt attttgttct      6540
     acagttattt gtaagtcgct aagtcacact attactacta aaacattgtt agaaaattaa      6600
     attttcaagg tggcggcga                                                   6619
//
ID   BEL-765_AA-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-765_AA-I;
KW   BEL-765_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-439
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-439
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 159-159 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 439 BP; 125 A; 95 C; 83 G; 136 T; 0 other;
     tgttgttgca tggttgagcc gcggtgtaaa tttcacggcc aatccaaccg aaccccctca        60
     ctacatatgc aactatatat aaaacaatac gtatataata gaccccaatt cggctatagt       120
     caaattttgc acagctagat tagtcgttat ccaaccttcg gtcgagatag tagcgtatca       180
     atcatttgtt cctacctgaa acgaaatata aagtatatta taatagttta aagccgttta       240
     caataaagtt attggatatt ggtaattccg cgtacttacg ttactctaag aggaagtttt       300
     caaagtgatc tgtggcattc ctgtttcctg tggtccgtcg agagtgaact ccgtagatcg       360
     gttgctttcc tccactgatt gctttcgcag tttcttggcg tagaagctga aggtacgact       420
     ttcaccacta aacccaaca                                                    439
//
ID   BEL-766_AA-I repbase;    DNA;    INV; 5839 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-766_;
KW   BEL-766_AA-I; BEL-766_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5839
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5839
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           242..5587
FT                 /product="BEL-766_AA-I_1p"
FT                 /translation="MSNERRIKSLKTRQKSLLTSFGLIKTFVEDYSEDSCA
FT                 REVSVRLEHLVAIWNDFNATQAELETLDDTAIDAHLKERVEFETAYFQVKG
FT                 FLLSVNKTEPTSPRGSSSSSLTAPSPTSSHIRLPDIKIPNFAGNLDHWLNF
FT                 HDLFVSLVHSSHELTNIQKFYYLRSSLSGDALKLIQTIAISATNYQVAWNL
FT                 LLDHYQNPARLKNSYVDSLFEFPSIKRESASELNSLVEKFDANVKVLHQLG
FT                 ERTEYWDILLIRMLSSRLDPTTRRDWEEHSSTLNAVSFNSLTNFIQRRVTV
FT                 LQTIGKTNENSPPVSVNKKLAQRIIASHGASPTTQRKCVACSDHHPLYQCA
FT                 VFSKMSLEEKEKEVRRHQLCRNCLRKGHMAKECPSSTSCRKCRGHHHTQLC
FT                 PAQASTSPKITEIEPKVNPSQLCIEQPSASVSATVDEQISLASAGLERKNV
FT                 LLATAVIIVVDDNGTEHAARALLDSGSECCFATESFSQRIKVQRKRVHLPI
FT                 SGIGQSTMESRFKFRTKIHSRIYNYSTNVEVLVLPKVAIDLPSVAVNTSSW
FT                 EIPPGINLADPAFHQTGPIDLILGAEIFFELFKVSGRINLGPDLPTLVNSV
FT                 FGWVVSGKNNRSLSTTPIIANVATVANLNELMEKFWSIEGDSTRTCPSLEE
FT                 AACENHFRQTVSRTPEGRYIVSLPVKHDVLANLSDNRRTAIRRLHLLQNQL
FT                 ARNDELCQQYRSFMDEYLLLGHMALVKDYQQSQNPCYHLPHHAVIREDSTT
FT                 TKVRVVFDASCRSSTGPSLNDALMVGPTVQEDLRSITMRSRIHPILLNADI
FT                 KQMYRQILTDESSNRLQHIVWSPSPDAPLQTYELKTVTYGTASAPYLATRV
FT                 LQQLADDEQNDYPEAAEVLRNDFYVDDLFSGAKTTEEAITLREQLEKLLKK
FT                 GGFELRKWASNEPAVLEDVPIENRALKPSVDLEKDQCIKTLGLHWEPSSDT
FT                 LRYKVQIPASPTIEVLTKRTVLSHIARLFDPLGLVGPVVTTAKIFMQAIWT
FT                 LVDDDEKPWRWDKELPAAIKDRWTSYQMQLPSLNALRVQRCVLLPMPTSVQ
FT                 IHIFTDASEHAYGACVYLRSTNSNGSVKVALLSSKSKVSPLKQQSIPRLEL
FT                 CGALMGAQLYEKVVASLRIKTDTFFWVDSTVVLYWLKSSSSTWATFVANRV
FT                 SKIQVATENCTWNHVAGVQNPADLISRGTTPTNLIKNQLWWNGPEWLHRNS
FT                 AEWPIAQSQHLHSEEALQEVKRSYSTACPVNEEPSFIDRYVQTFSNYTTML
FT                 RITAYCLRFLENCRRDASNRPPCKFLTLEEIKRAEFTLIKLVQLQCFSGEI
FT                 ERLQQNLQVSEKSRLRWFHPFLDSHQILRIGGRLGNSRLTFDSKHPIILPA
FT                 SHTFSTLLVRALHLRHLHAAPQLLLNLLRLQYWVIGARNIARRTVHNCVVC
FT                 FRNRPKLIEQFMAELPAARVTATQPFAVTGIDYWGPIQIQPQHRRASPRKA
FT                 YVAVFVCFCTKAVHLELVADLSTSKFIQALRRFVSRRGLCSDIYSDNGRNF
FT                 VGAAKELRHLLRSQEHKAAIAQECTKNGIKWHFNPPTASHFGGLWEAAIAS
FT                 AQKHFTRVLGPHILAFDDTETLLAQIECCLNSRPLVPISDDPSDFEALTPG
FT                 HFMIGSSLKAVPDVDYSAIPFNRLCHWQQTQKIFQDIWRRWHTEYLSTLQP
FT                 RTKWLKPSTTIDIGRLVILKDEKAPPMRWEMARITELHPGSDEIVRVVTLQ
FT                 TPHGKYTRPVSKICLLPINSSSPANESSPSAASNPPAPNLQSNSTVRGKTQ
FT                 SSSNSIGENLN"
XX
SQ   Sequence 5839 BP; 1621 A; 1547 C; 1227 G; 1444 T; 0 other;
     aagtggtcct tcgagccgga tactccgtcg aactccggat atccaaccgt ctgctggagc        60
     tgctcaccac gtgcatcacc gtacccttcg gagagatcta cgagcatcga aatttataca       120
     aggcaaagac ttgcctgata tcaggtaatt ggctgtccaa ccaccccata cgtaaccctt       180
     ttgagctacg cggtctgtga ttttcagatc ctgctcatca cttcgcccct ttcccttcgt       240
     tatgtccaac gaacggcgga tcaaatccct caagacgcgg cagaagagcc ttcttacgtc       300
     attcgggctc attaaaacgt tcgtcgaaga ctacagtgaa gattcctgtg ctcgcgaagt       360
     gagcgttaga ctcgagcacc ttgtagccat ctggaatgac ttcaacgcca cgcaagccga       420
     gctcgagact ctggacgata cggcaattga cgctcatctc aaggaacgtg ttgaattcga       480
     gacggcctat ttccaggtca agggcttctt gctatccgtg aataaaaccg aaccaacgtc       540
     tcctcgtgga tcttcgtcgt cctcattaac tgcgcctagt cctacgtcgt cccatattag       600
     attgcccgac atcaagatcc ccaacttcgc tggaaatctt gaccattggt taaacttcca       660
     tgacctgttt gtttcgttgg tacactcgtc gcacgaacta acgaacattc aaaaattcta       720
     ctatcttcgt tcttcgcttt ctggggatgc tctaaaactc attcagacca ttgcaatcag       780
     tgctactaac tatcaggttg catggaacct cctcttggac cattaccaga atcccgcgcg       840
     tttgaagaat tcctacgtcg attccctgtt cgagtttccg tccatcaaaa gggagtctgc       900
     ctctgaactc aactctttag tagagaagtt tgatgcaaac gttaaggttc ttcaccagct       960
     tggcgagaga acggaatact gggacattct gctgatccga atgctaagta gccgattgga      1020
     tcccacaact aggagggatt gggaggaaca ctcatcgaca ttgaatgccg tttccttcaa      1080
     cagcctcacc aacttcattc agcgaagagt taccgtgttg caaacgattg ggaagaccaa      1140
     cgagaattca ccaccggtca gcgtcaacaa gaaacttgcc caacgaataa tcgctagcca      1200
     cggagcaagt ccaacaaccc agcgaaaatg tgttgcttgc tcagatcatc accctctgta      1260
     tcagtgcgcg gtcttttcga agatgagtct tgaggagaag gagaaggaag tgcgccgcca      1320
     tcaactttgt aggaactgcc tgcgcaaggg tcacatggcc aaagaatgcc catcgtcaac      1380
     tagctgtcgg aaatgtagag gtcaccatca cactcaactg tgtccagctc aagcgtctac      1440
     tagcccgaag atcaccgaga ttgaacccaa agtgaatcca agtcaactat gtatcgaaca      1500
     gccatctgct tctgtatcag caactgtcga cgaacaaatt agcctcgctt ccgctggact      1560
     cgaacggaaa aacgttctct tagccactgc tgttataatt gtagttgacg acaatggcac      1620
     agaacacgct gccagagcac tgctcgactc cgggagcgag tgttgcttcg ctacagaatc      1680
     gttttcgcaa cgcatcaagg tgcaacgtaa acgcgttcat cttccaatat ctggaattgg      1740
     acaatccacc atggaatcgc ggttcaaatt ccgtactaag atccactctc gtatctacaa      1800
     ttattccacc aatgttgaag ttctagttct gccgaaagtc gccatcgatt tgccttcagt      1860
     cgccgtcaat acatcatctt gggaaattcc accaggtatc aatctggccg accctgcctt      1920
     ccatcaaact ggtcccatcg atctcattct gggtgctgaa atatttttcg aactcttcaa      1980
     agtgtccggc cgaatcaacc ttggtccaga tctacctact ttagtaaatt ccgtattcgg      2040
     ctgggtcgtt tccggaaaga ataaccgaag tctatcaacc actccaataa tcgctaatgt      2100
     cgccaccgtc gccaatttga atgaactcat ggagaagttt tggtcaattg aaggggatag      2160
     cacacgcacc tgtccatccc tggaagaagc agcatgtgag aatcatttca gacaaacagt      2220
     ctctcgaaca ccagaaggtc gttacatagt ttcgctccca gtaaagcatg acgtccttgc      2280
     taatctgagt gacaatcgcc gtaccgctat tcgccgtctt cacctattgc agaatcaact      2340
     agcacgcaac gatgaacttt gtcagcaata ccgaagcttc atggatgagt acctactact      2400
     gggccacatg gctcttgtga aggattatca gcaatcgcaa aatccatgtt atcatcttcc      2460
     ccaccatgct gtcattcgag aagacagtac caccacgaaa gtacgcgtgg tcttcgacgc      2520
     atcttgccgt tcttcaaccg ggccatcctt aaatgacgca ttgatggttg gtcctaccgt      2580
     gcaagaagat cttcgatcta ttactatgag gtccagaatc catcctattt tgctcaatgc      2640
     cgatattaaa caaatgtatc gacagatact cacagatgaa tccagtaatc ggcttcagca      2700
     catcgtatgg agtccatcac ccgatgctcc attgcaaacc tatgagctca aaacagttac      2760
     ttacggcact gctagcgctc catatctcgc aactcgtgtg ctgcagcaat tagcagacga      2820
     tgagcagaat gattaccctg aagcagctga agttcttcga aatgacttct atgttgacga      2880
     tctgttttct ggagctaaaa caacagaaga ggctattact ctgagagaac aactagaaaa      2940
     gcttctcaag aaaggaggat ttgaactgcg gaaatgggca tcgaatgagc cagccgtact      3000
     agaggacgtt ccaattgaga atagggcact gaaaccatca gtcgatctcg aaaaggatca      3060
     atgcatcaag actctagggt tacattggga accgtcatca gacacattac gatacaaggt      3120
     acaaattcct gcgtcaccca ctattgaagt gttaaccaaa cgaaccgtgt tgtcccacat      3180
     tgctcgccta ttcgacccac tgggacttgt tggtccagtc gtcacaaccg ctaaaatttt      3240
     tatgcaagcg atttggactc tagtcgacga cgacgaaaag ccatggagat gggacaagga      3300
     actcccagcc gcaatcaagg atcgctggac atcgtatcaa atgcagcttc catccctcaa      3360
     tgctcttcgt gtgcaacgat gcgttcttct tccaatgcca acatctgttc aaatccatat      3420
     cttcactgat gcctctgaac acgcatacgg cgcgtgcgtc tatttgcgat cgactaactc      3480
     caatgggtcg gttaaggttg cactgctttc atccaaatcc aaagtcagcc ccctaaaaca      3540
     acaaagcatt ccacgattag aattatgcgg cgctttaatg ggtgctcagc tctatgaaaa      3600
     ggttgtagca tcccttcgca taaaaacaga caccttcttt tgggtcgatt ccaccgtcgt      3660
     gctgtactgg ctcaaatcat cttcatcaac ctgggccact ttcgtggcaa atcgagtctc      3720
     aaaaattcag gttgccacgg agaactgtac ttggaatcac gtagcaggag tacaaaatcc      3780
     agccgacttg atctctagag gaactacacc aaccaacctt atcaagaatc agctctggtg      3840
     gaatgggcca gagtggcttc atcgcaattc tgccgagtgg ccaatagcgc aatcacaaca      3900
     tctacattca gaagaagctc tgcaagaagt aaaaaggtca tatagcacgg catgtccagt      3960
     caacgaagaa ccctctttta tcgaccgata tgtgcagacg ttctcaaatt acactaccat      4020
     gctacggata actgcatact gtcttcgatt cttggaaaac tgtcggcgtg atgctagtaa      4080
     ccgtccaccc tgcaagtttc tcaccttgga ggaaatcaag agagcggaat tcacgttaat      4140
     caaactggta caactccaat gcttcagtgg cgaaatcgaa cgactgcaac aaaatctgca      4200
     ggtatcagaa aaatcacgat tacgttggtt ccacccattt ctggacagtc atcagattct      4260
     tcgaattggt ggtcgtctag gaaattcacg attaacattc gacagtaagc atcctatcat      4320
     tcttcctgca tcacatacgt tctccactct actggtcaga gctctgcacc tgcgacacct      4380
     tcatgccgcc ccacagcttt tactcaacct tctccgactc cagtattggg tcataggggc      4440
     cagaaatatt gccagaagaa ctgtccacaa ttgcgtagtt tgcttccgaa atcgaccaaa      4500
     attgatcgag caatttatgg cggagctccc tgctgcccgc gtaacagcca cccaaccatt      4560
     tgcggtaacc ggcatcgatt actggggacc cattcaaata caaccccaac accgacgagc      4620
     atccccaaga aaagcttacg tagcggtttt tgtgtgcttc tgcacaaagg ccgtgcacct      4680
     agaactagtg gctgacctga gcacatcgaa gttcattcaa gccttacgaa gattcgtgtc      4740
     acggaggggc ctctgttctg acatctatag cgacaacggg cggaattttg ttggtgccgc      4800
     caaggaacta cgtcatctgc ttcgaagcca ggagcacaaa gctgctatcg ctcaggaatg      4860
     caccaaaaat gggataaagt ggcactttaa ccccccaaca gcgtcccatt tcggtggatt      4920
     atgggaagca gcaattgctt cggcacaaaa acactttact cgagtgttgg gacctcacat      4980
     cttagcattc gacgatacag aaaccttgct ggctcaaatt gaatgctgcc taaattcgag      5040
     accacttgtt cccattagtg atgatcccag cgactttgag gcacttactc ctggtcattt      5100
     catgatagga tcttccctta aagcggttcc ggatgttgac tattcggcta taccattcaa      5160
     ccgtctttgc cactggcaac aaacacagaa aatcttccag gatatatggc gaaggtggca      5220
     tacggaatat ctgtcaacgc tgcagccgcg aaccaagtgg ctgaaaccat caacaactat      5280
     cgatatcgga cgattggtca tccttaagga tgagaaagct cccccaatgc gttgggaaat      5340
     ggctcggata acggagttgc atcctggatc tgacgagatc gttcgtgtcg tcacactcca      5400
     aacacctcat ggaaaataca ctcggcctgt ctccaaaata tgtctgctac ccattaattc      5460
     gtcatctcca gcgaatgaat catcgccgtc agcagcttct aatccaccag caccaaatct      5520
     tcaatccaac agcaccgtcc gtgggaaaac acaatccagc agtaattcca tcggcgagaa      5580
     cctaaattaa acgataaaat gccctttttt caaagggact aggtgagaac cagtccaaat      5640
     ttttgtatcc ttttgaaacc cgctaccggg tcttttgttt tcctttcatc cagcaattaa      5700
     aaacatcgac cgattgtgaa accagccgac tgacgtttat gtgtgaccaa aacaaacagc      5760
     gataagagca agggacaacc cacagacatc ccatcatcga gtgtcggtat cagaaatagg      5820
     atttctgaag gggccagga                                                   5839
//
ID   BEL-766_AA-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-766_AA-I;
KW   BEL-766_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-521
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-521
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 160-160 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 521 BP; 180 A; 111 C; 100 G; 130 T; 0 other;
     tgttcgcgta tacacggaaa attgggagat atgcaactac acatttcacc taaccaccgc        60
     aaatgatgaa gcaacgcgca acgccatctc accgtgaaga ggagtataga tcgccaatca       120
     cctgtgctcc aactaactcc gacaccgtta gcaatgacat taacggacct tcaggaatag       180
     catcatggag gaaaactaac ttccgatccc ttggacagta taaaaggcct catggacgtc       240
     atcgagctct ctttctctcc aactgtcacc aagcacgaag atagtgaaaa cgtcaacaaa       300
     attaaatggt taattttagt aaagtagtcc ttttgaagtt gcatgaaata aaaagttgaa       360
     ttgcgttaaa gttaatttaa atatacagtg gtttaatgcg aacagtaaag tgaagtgact       420
     ttgtaataaa ataaatctga attccgaaaa gtgtagtgca cagtggaatc gcttcaacgg       480
     atttaccatc acagtcaacc gtctcagcaa gctattcgac a                           521
//
ID   BEL-767_AA-I repbase;    DNA;    INV; 6570 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-767_;
KW   BEL-767_AA-I; BEL-767_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6570
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6570
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 239-239 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1163..6547
FT                 /product="BEL-767_AA-I_1p"
FT                 /translation="MPPKTDPDSNPVFLRGTKKNLLESFEQLKANFADGGD
FT                 KLINSIDAWSERIDQIAQDYRRVVCELESVHGDAPYKSERLEFEESYCDMR
FT                 AIVLKLQKQSLSPTFPQPAQTVTHIRYPELSLPRFSGRLEDWCVFRDAFDS
FT                 AIGCRPEISDYEKFQYLKGLVQGDASRIVNSVPVSQDGYRDAWRALKLRYE
FT                 NKRQLVRCHIKALFDTPSMKRESAEELLNLVDRFEQHLSVLKRLGEDTQAW
FT                 SSLLVFQLSIRLDPNTLREWENHCVRLDSDNVAAILGGTADEEEGDEESLP
FT                 SYVSMVNYLQNYARVLQSVGPNRDQNAKPKPQKSAVHVSSPPVPSNPKFLR
FT                 KCAKCHQDHMLYQCPDFNKLSENQRLDFAKNLKLCLNCLRKVDHFAKSCPW
FT                 KTCNRCPKKHHTLLHGANFAPPFSSGSQSPKAVTMVAQPTSSQQTAKTPSL
FT                 QDSRSSSTTTLSSQSQPPFAYTDLNVAMMTCEKSKIPKTPKTVILPTALVE
FT                 IEGNNGRKFFARCLLDSGSQSNFMTSALSQRLQLSRTRVSSPVVICGIGQA
FT                 TIKSDQMVTAKVSSLTSAFSVEPQFLVLQSLAIKLPVSTVSIQEWPIPPHV
FT                 CLADPAFFVSQEVDIILGAEYFFEILRYGRIKLGDHLPSLQNTVLGWIVSG
FT                 SCPVADHDHADPRTCFTTQTAQIEELLKRFWELETIRETKPWSPDEKYCEK
FT                 HFVANTTRTEQGRYVVRLPKREELLSHLGDNQGRAAKRFYSLERSLQTNPE
FT                 KKMLYHSFIQQFLEMEHMREISSQELCQRPQFFLPHHGVLKMDSATTKLRT
FT                 VFDGSCKSSSGLSLNDVLLAGPTIQDSLVEIVVRFRIHRFVISADIEKMFR
FT                 QIFIHPEDQPLSRIWFRFDSDHPLKAYQLTTVTYGLNSSPFLATRVLKLLS
FT                 EDEEANFPLAAPVARKDFYMDNLLSGCNDESELVTVVQQLIELLRAGGFPL
FT                 RQWSSNCQAVLDSIPEELKETRTLLELDDYNPTISALGLLWEPASDKLAFK
FT                 LPNLKENVPLTKRTVLSQMSSLFDPLGLLGPSIVRAKILMQSLWKQHLDWD
FT                 MPLPDNFRKDWEDFHDSIPFIRDFKVSRSVVKYPYHRLELHGFSDASELAY
FT                 GACIYLRSVDENDKCSVELLIAKSRVAPINNKSVPRLELSAALLLAHLLEM
FT                 VNRSTSLSVPVYLWTDSTIVLSWLAAPPSKWKTFVANRVAEIQELTSSAVW
FT                 NHVPSEDNPADMISRGVSLRDLTECTFWWHGPRWLRLSMLPWPERYNAENH
FT                 LCEELEQRMTVALPIIAEVEDVIDRYSQLGRLLRICAWGHRFRENTRRDVS
FT                 DRVTGPLSSAEIDRALVGLVRRVQEECFGPEIAQLKKGATVDRKSKLRFLK
FT                 PSLVEGVIRVGGRLHHSALSVDEKHPIVLPAKHRLTWLIATLEHAKTLHGG
FT                 PILLLSSLRQRFWPLNGRNLARSVVHQCVTCARARPRLLEQMMGDLPPVRV
FT                 TRSFPFDNVGVDFAGPLYVRKAHRKAIPIKVYAAIYVCLGVKAVHLDLVPD
FT                 LTTEGFIASLRRFVGRRGKPHHIYCDNGRNFVGAQRELGELRRLFLSQAHK
FT                 DVVIKECADGGTEFHFIAPRSPSLGGIWEAAVKSMKFHLRRVVGNALLTET
FT                 ELRTVLIQIEATLNSRPISPMSEDPQDLEPLTPGHFLVGRPLNAIPEPDLT
FT                 DLSERRLSRWQQVQRLSQHFWKRWSRDYLSNLQNRYRWTDVSANLVKNAIV
FT                 LLQDDNLPPQKWAIGRIVDVHPGEDGLVRVASIKTATGVTQRAVSKLCLLP
FT                 VEIDAELATAPLNVVDRLVPDSEE"
XX
SQ   Sequence 6570 BP; 1656 A; 1542 C; 1618 G; 1754 T; 0 other;
     aagtggtcct tcgaaccgga ttctttggac agttgaccgg tggagccgcg gttataagtg        60
     aaaatttcga agcgacaacg tgttcggacc agccgcgtgg ttcgttgtgt ttcgtgcgca       120
     tacaacttgc gcgtcggtag tgtgagaaac gtggctcaaa cagcaaaaag agagagcgtg       180
     aagaaagtgc gcgtcgttcc cgtcgctcat acacagccac agaatcgagt gcgcgtgtgc       240
     agtgctacgc tgttcgttgt cgcgtattgc gtcgagtgga gacacgcttg tgtgcgtatg       300
     ccgtttgcga gatcgcctag gcgtaagcac gtgttcggaa gccacgctgg ttgagtgagt       360
     gacgattaac accaaccacg tgtttgtgaa aaaagatagc gtcaaacttt ccgtggtagt       420
     gccgtcggct tagctaagcg tgttagcgcc gactatcaaa ctgtattcgc gcgtagcggt       480
     attttttctc gcttgtaggt gatcacattt tcttcgctgg ttctgttcga tgaaccagaa       540
     acccggacga tccctacaag aaacccggaa cctctacgcg tcaacggtga tagtgtactt       600
     gtgttgtggc gttgtatatt cgctaattcg taccggcgtg atcgctgtgg ctgaaatatc       660
     agcagtgaat ttcggaactc tctcgccgta gtagttattt tcgctcttgg tggaatcgta       720
     ttttgcttcg ctggatttgt gagtggaacc agaaacccgg acgatcacca caagaaaccc       780
     ggaactacta cgtgcaacgg ttggaaccat agtgttagtg aaggttgcag agattttgtg       840
     tcgaagtgaa ctgatcccga gatttccgtg ttggtgttat caccggcatt gcagcgtgta       900
     cagcagactc gttcccgcta gctgacatcc agtttttgcg cgtcgcctca tccaaagaga       960
     gcagccacca gctttcacca ccagtcagct gcgtaagtac cctgcatttt ttattccttg      1020
     cacacgaatg tcgcggacag ccaaccggta attggctcgt cgtatttcga tcgatatcgc      1080
     gtcgcggtag tgtcgacccg cgtgttgacc cggaaagcaa cgacccgttt cgtttacgtt      1140
     gtgcccttag tgccgcgtaa aaatgccccc aaagactgat cccgattcga atcccgtgtt      1200
     tttgcgggga acgaaaaaga acttgctgga atcttttgag cagttaaaag caaattttgc      1260
     cgacggaggc gataagttaa taaactcgat tgatgcctgg tcggaaagaa ttgatcaaat      1320
     cgcccaagat tatcgtcgcg tggtttgtga gttggagtca gtgcacggtg atgccccgta      1380
     caagagtgaa aggctagagt ttgaagaatc atattgcgat atgcgtgcaa ttgttttgaa      1440
     gttgcaaaag caatcccttt ctccaacgtt tcctcaaccc gcgcaaactg taacgcatat      1500
     tcgatatcca gagttgagtc tgccacgatt cagtggacgt cttgaagact ggtgtgtttt      1560
     tcgagacgct ttcgattccg ccatcggttg tcgcccagaa atcagtgact atgaaaagtt      1620
     tcagtacctg aagggtctgg ttcagggtga cgcatcgcga atagtgaatt ccgttccggt      1680
     tagtcaggat gggtaccgtg atgcgtggag ggcattgaaa ttgcggtacg aaaacaagcg      1740
     tcagttagtt cgttgccaca ttaaagcttt gttcgatacc ccgtcgatga aacgagaatc      1800
     ggcagaagag ttgctcaatc ttgtcgaccg tttcgagcag catttatcag tgcttaagcg      1860
     gttgggagaa gacacacagg cttggagctc gctgttagtt ttccagctgt ccattcgcct      1920
     tgatccgaac accttgaggg aatgggaaaa tcattgtgtc cgtcttgatt ccgacaacgt      1980
     ggcagccatt ctgggtggta ccgcggacga agaagagggt gatgaggaat ctttaccttc      2040
     gtacgtgtct atggtgaatt atctgcaaaa ctatgcaagg gtgctgcaat cagttggccc      2100
     aaacagagat caaaatgcaa agcctaaacc acaaaaatca gccgtccatg tgagttctcc      2160
     gcctgttcca tcaaatccga agtttcttcg aaaatgcgcc aaatgtcacc aggatcacat      2220
     gctgtatcaa tgccctgact tcaataagct ctccgagaac caaagattag attttgctaa      2280
     gaatctcaag ctctgtttga attgcctccg aaaggtcgat cacttcgcta aatcttgtcc      2340
     gtggaaaact tgtaaccgat gtcccaagaa gcaccacacg ttacttcatg gagcgaattt      2400
     cgcacctcca ttttcctctg gtagtcagtc ccctaaagca gtcaccatgg tagctcagcc      2460
     aactagttct caacaaaccg cgaagacgcc tagtctgcaa gattctcgct cttcttcgac      2520
     gacgactctg tctagtcagt cacaaccgcc gtttgcgtac acggacctga atgtggccat      2580
     gatgacttgt gagaagtcta agattccaaa aacaccaaaa acagtgattc tcccgactgc      2640
     gctagttgag attgagggga acaacggacg taaatttttc gcccggtgtc tgctagattc      2700
     tggttcccag agcaatttta tgacgagtgc attaagccaa cgactgcaac tttcgcgaac      2760
     ccgtgtatcc agtcccgtgg taatctgtgg tattggccaa gctactatta aatcggatca      2820
     gatggtcact gccaaagtat cgtcgctcac atctgcattt tcggttgaac ctcaatttct      2880
     ggtcttgcaa tctctcgcca tcaagttgcc tgtttcgacg gtcagcattc aagaatggcc      2940
     tatccctcca catgtgtgtt tggcagatcc cgctttcttt gtatcccaag aggttgacat      3000
     tattcttggt gccgaatact tttttgagat cctacggtat ggccgcatta aacttggcga      3060
     tcatcttccg tccctacaaa acacagtcct tggatggatt gtttccggat cgtgtccagt      3120
     agcggatcat gaccatgcag accctcgtac atgtttcact actcaaaccg ctcagattga      3180
     ggaacttctc aagaggtttt gggaattgga aaccatccgc gaaactaaac cttggtcacc      3240
     agatgagaaa tactgtgaaa aacattttgt ggccaataca acacgcactg aacaagggag      3300
     gtatgtcgta agacttccaa agcgtgagga gctcctgtcg catttgggtg ataaccaggg      3360
     tcgagctgcg aagcgatttt actcattaga gcgatcgtta caaacaaacc cagagaaaaa      3420
     aatgctttac catagcttca ttcaacagtt tttggaaatg gaacatatgc gcgagatatc      3480
     ttctcaagag ctgtgccaac gtccgcagtt ttttcttcct catcatggag tattgaaaat      3540
     ggatagtgct acgaccaaat tgcgcacagt attcgatggc tcttgtaaat catcctccgg      3600
     actatcactc aacgatgtct tgctagccgg tcccacgata caagattcct tagtggaaat      3660
     agttgttcgc ttccgtattc atcgtttcgt gatttccgcc gatattgaaa agatgttcag      3720
     gcagattttc atccaccccg aagaccaacc gctttctcga atttggtttc gtttcgattc      3780
     agatcatcct ttgaaagcct accagttaac gacagtaaca tacggtttga attcttctcc      3840
     gtttttggcg acacgagtgt tgaaactgtt gtctgaagat gaagaagcaa atttcccgct      3900
     tgcagcacct gttgctagga aagacttcta catggacaac ctgctaagtg gatgtaatga      3960
     tgaatcggag ttggtaacag tcgtccaaca actgatagag ttgcttcgtg caggaggatt      4020
     tccccttcgc cagtggtcat caaactgtca ggcggtacta gatagcattc cagaagagct      4080
     gaaggaaact cgtaccctgc tggagctcga tgattacaac ccgacgatat ctgctcttgg      4140
     attgctttgg gaacctgcta gtgataaact tgccttcaaa ttgcctaatc taaaagaaaa      4200
     tgttccacta accaaacgaa cagttctctc tcaaatgagc agtttatttg accctctggg      4260
     tttactcgga ccctcgattg tgcgagcaaa aatattgatg cagtcgctgt ggaagcaaca      4320
     tctagattgg gatatgccgt tgccggataa ttttcggaaa gattgggaag attttcatga      4380
     tagcatcccc tttatacggg acttcaaggt ttcccgttca gtagtgaaat acccgtacca      4440
     ccgacttgag ttacacggct tcagcgatgc ctcagagcta gcatacgggg cgtgcattta      4500
     tcttcgatca gtagacgaga atgacaagtg ttcagttgaa cttttgatcg ccaaatctcg      4560
     tgtcgctcct atcaacaaca aatcggttcc aagattagaa ctttctgcgg cacttttgtt      4620
     agctcatttg ctggagatgg tgaatagaag tacatcgcta tcggtccctg tctatttatg      4680
     gacagactcc acaatagtac tgagttggct agctgctcca ccgtctaaat ggaagacctt      4740
     tgtagcgaac agggtggcag agatacaaga actcacatca tcagcagttt ggaatcacgt      4800
     tccatccgaa gataacccgg cggatatgat ttcgaggggt gttagtcttc gggatctgac      4860
     ggaatgcaca ttctggtggc atgggccaag gtggctcagg ctgtcaatgt tgccatggcc      4920
     cgaaaggtat aatgcagaaa accatttatg tgaagaatta gagcagcgta tgactgttgc      4980
     gttgcccatc attgcagaag tggaagatgt tatcgatcga tattcgcaac ttggtcgtct      5040
     gctcaggata tgtgcgtggg ggcatcggtt ccgcgaaaac actcgtcgtg atgtttccga      5100
     tcgcgtcacc ggtccgttat cgtccgcgga aatcgatcgc gctcttgtcg gtctcgttcg      5160
     tcgtgtgcaa gaggaatgtt ttggtccgga gattgcgcag cttaaaaaag gggccaccgt      5220
     tgatagaaaa tcaaagctgc gatttttgaa gccgtcgctt gttgaaggcg taattagagt      5280
     tggcggccgg cttcatcatt ctgcgctctc cgttgatgaa aagcatccca tcgttctccc      5340
     tgccaagcat cgcttaacgt ggctgatagc tactctggag cacgctaaaa cgctccacgg      5400
     tgggccaata ttgttgcttt cgtcgcttcg tcaacgattt tggccgctca atggtcgtaa      5460
     tctagcacga tcagttgttc atcagtgtgt tacatgtgct agagcgcgcc ctcgattact      5520
     tgagcaaatg atgggagatt taccaccagt aagggtcacc agatcttttc cattcgacaa      5580
     cgttggcgtc gactttgctg gacccctcta cgttcgcaaa gcacatcgta aagcgatacc      5640
     gatcaaggtg tacgctgcca tctacgtgtg cctaggggtt aaggcagtac acctcgatct      5700
     agtaccagat ctcaccacgg aagggttcat cgccagtctt cgtcgctttg ttggtaggcg      5760
     aggaaaacca caccacatct actgtgacaa tggtcgcaat tttgttggtg cgcaacgaga      5820
     gttaggtgaa ttacgacgac ttttcctatc ccaagcgcat aaagatgtcg taataaagga      5880
     atgcgctgac ggaggaacag aatttcactt catagcaccc agatcgccgt cattaggggg      5940
     catttgggaa gcagcggtga aatcaatgaa gtttcatctt cgtcgtgttg tcgggaacgc      6000
     tttgctcact gaaacagaac ttcgaactgt gctgattcag atagaagcga cgttgaattc      6060
     ccgcccaata tcaccgatgt cagaggatcc tcaggacctg gaacctctga ctccaggcca      6120
     ctttctggtt ggcagaccac ttaatgccat accggaacca gatcttactg acctatcaga      6180
     gagacgactg tcacgctggc agcaagttca acgattatcg caacactttt ggaaacgctg      6240
     gagtagagac tatcttagca acctgcagaa tcgttaccgc tggacagatg tttcagccaa      6300
     cttggtcaag aacgcgatag tcctacttca ggatgacaat ttgcctcctc agaagtgggc      6360
     cataggaagg attgtggatg ttcatccagg cgaggatggg ctcgttagag tcgcgtcgat      6420
     taaaacagcc actggagtaa ctcagagagc ggttagtaaa ctctgccttc taccagtgga      6480
     aatcgatgcg gagctggcca ctgctccttt aaatgtggtg gatcgtttgg tgccagattc      6540
     ggaggaataa attcattttg gcggccggga                                       6570
//
ID   BEL-767_AA-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-767_AA-I;
KW   BEL-767_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-454
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-454
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 87-87 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 454 BP; 145 A; 103 C; 79 G; 127 T; 0 other;
     tgttgaatac caaataaata aaatgaatct gtaagacttt accctagctt aaaactaact        60
     tcaaatcgaa cataacggta aatagcttca gattgtatag agagaaagtt gttttggcct       120
     tgaaactgta aattcaattg aattgtatct tatatactat tctatgtaca atatcaatac       180
     taatttgcgc atcaaccatc ctaatactaa tactaaccaa tatgctaccc tataaaagtt       240
     aacccccatc cttgaataaa gtcagtcttg ttaaacctac cacccgtgaa ccacgatatc       300
     tagtgctaat ccgaaaatcc gaaaacccgc gtgtgctgaa gtccccccag tgtctgtgtc       360
     tgccgccagt cccagtccgc cttgagcgtc gaaggtcggt ccgcgaattt catcgagtga       420
     attcggggcc gggaaaagat tactgtggtg taca                                   454
//
ID   BEL-768_AA-I repbase;    DNA;    INV; 6806 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-768_;
KW   BEL-768_AA-I; BEL-768_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6806
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6806
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 240-240 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1382..6223
FT                 /product="BEL-768_AA-I_1p"
FT                 /translation="MVLPGGASATKAPTMRALTARLKEIHLSFNDIHRFTQ
FT                 KFSEATSITEVEIRMAKLDELWESYSATMVEIFAHEDYNPEKTSLEKERVE
FT                 FSDQYYEVKTFLMDKVKEVHQPLILEQTSRAGDGSASNTSDHVRLPQIKLQ
FT                 TFNGDIDDWLSFRDLFTSLIHWKVDLPEVEKFHYLKGCLQGEPKALIDPLP
FT                 ITKANYQVAWDSLLKRYNNSKQLRKRQVQAIFKLPTLSKESGADLHILVEG
FT                 FERIVQTLDQVVQQNEYKDLLFVNILTARLDPVTRRGWEEVSSSKEQDTLE
FT                 DLFEFLRRRIQVLDSLPPKSTDTRGVGQLQQQSKSRTQFMKASYSSTQSNQ
FT                 ASRGRCVVCSSDHLLYQCNEFQQMAVSDRDGLLKSHGLCRNCFRVGHQAKD
FT                 CHSKYFCRNCKGRHHTLVCFKRDKERETKVAAVAGGNKPSNSKNQQEPSNT
FT                 QVANVAATETAVSAAAHQHPTQVLLATAVVMIEDDVGNHYPARAMLDSGSE
FT                 SNFITERLSQRLQVHRDRVDISVAGIGQVATKVRQRLRAVLRSRVSDFSRE
FT                 LDFLVLPRVTVNLPTTTIKTDTWTLPSGIQLADPTFFESSAVDLVLGIECF
FT                 FDFFETGNRISLGEQLPALTESVFGWIISGGISIPARSLQISCNGSTLDNL
FT                 DSLITRFWSCEEVESGKAYSPEEARCEKWFSSTVQRDTNGRYTVALPKVED
FT                 AVSRLGESKDIAFRRLLGTERRLARDPSLREQYVGFMAEYLELGHMEMVDE
FT                 ARSNSTKRCYLPHHPVVKEASTTTKVRVVFDASCKTATGVSLNDVLLVGPV
FT                 VQEDLRSIILRSRTKQIMLVSDVEKMFRQIIVRPEDRPLQCILWRNSPSED
FT                 VRSYELNTVTYGTKPAPFLATRTLHQLALDEEGRFPLAALAVMEDTYMDDV
FT                 ITGANDVQTATELQIQLNTMLSGGGFQLRKWASNCPTALAGIPQENLAIRT
FT                 PNGINLDPSPSVKTLGLTWFPSTDTLGFQFTIPSLDVDEILTKRTILSVIA
FT                 TLFDPLGLLGAVITTAKIFMQQLWTIRDENGKSLDWDQSLPSTVGEAWRKF
FT                 HELLPLLNQLRIERCVIIPKAVSIEIHCFSDASEKAYGACLYIRSTDASGR
FT                 IRVQLLSSKSKVAPLKCQTIPRLELCGAVLGVQLFEKVRESIRITATSYFW
FT                 TDSTCVLRWIEALPTTWTTFVANRIAKIQTITEGCRWSHVPGTQNPADLIS
FT                 RGITPQDILENRFWWQGPAWLQDDPDQWPKSPDISSIREVDEEKRRTVIAG
FT                 TVSTVVEFNNMYFQKFSSYSDLVRRTAYWLRLMKLLRLPSSQRSDHGFLTT
FT                 SELREAENTLVRLVQKEVFVEELKALSRAEPVPKGSRLRWYNPFLTKDQLL
FT                 KLGGRLKHSLEPEEAKHPVVLPARHPFTRLLLQHYHERLLHAGPQLMLSVV
FT                 RLRFWPLGGRSVVRNTINKCQKCFRSKPSPIQQFMGDLPAARVVISRPFSN
FT                 SGVDYFGPVYLRPVPRRGVVKAYVAIFVCLCTKAVHLELVSDLSTDRFLQA
FT                 LRRFVARRGRCSNIYSDNGTNFVGARNKLQDLLQLLRNRDHNDAVAKECAK
FT                 DGIQWHFIPPSAPHFGGLWEAAVVHLNIICCEYWVRHRYHQRISARC"
XX
SQ   Sequence 6806 BP; 1744 A; 1661 C; 1667 G; 1725 T; 9 other;
     ttctggtcct tcgagccgga tsmgggccaa ccagaccctg gactaaacgg aagcttcgat        60
     actggatcgt ggctagaatc ggcgaaagga tcgccatcac tatcaccatt gtggatgcca       120
     tctattcggg gaacaatcag tggctttgtt ccattcagga cccttgcgcg ccttaggacg       180
     tagcgtcgct tctctggacc gccatcgctg ctaattcttt cgggcttggc ttggacttca       240
     gccaaaagga gttttgtgca ggttagtgaa cccttgctat tatatgtcca gccaagctag       300
     gaaattactc tccactaaca cctggttttt ctgtgcgatt tggcttgcts ttccatggtt       360
     cgccgaggat acgaccgagt tcttcaatca acccaaatcc accggtttgg cagtgcatcc       420
     gtttgcttgt gggaaatttg aacgcttgga gcttggactg cwtatccgtg cgaagkcatc       480
     agaggtcatc gaccggctat ccagctggtg aatcagaggt catcgaccgg ctattctgct       540
     ggtgaatcag aggtcaccga ccggctatcc agctggtgaa tacatcggcc ggcattgagg       600
     ctagtctacg ctatcgggtc aacgaccagc aacccaagcc agtgagaagg atagtttgcg       660
     acgtttggca ggatttmagc gtagagaggc agcatcacca tactttttcc aaggtaaatt       720
     tagaataagt gtactgccga agcaaggcaa atggaaatac accattgtaa tttggatcga       780
     aacctcttcg tcttacctct ctaatcgctg agccctgctt gcccgtttgg gctcctccgt       840
     cttgatttgg attcgtggag cggaagtgga tttgtcgtat gcttgttccg ctgggagttt       900
     gatcgtttgg tgcagtaatt gtctcatgtg gtgagttgcc gcagtatatg cctggccgaa       960
     gccatcccct ttggatacta caccatattt tctcctcttc attcatcccc ttactcgagt      1020
     aattgctgtg gttcgacgat ttgggtacaa ggctgcctgt gtagttcatc atttagaatt      1080
     ggagcatcgc tttcagtttg atcgggtaaa tttatgcagt atatgcctag cgaagctagg      1140
     cccacactct gtctactaca ccgcaccttt cctctttgat ccacttcgtt actgctgagt      1200
     tttcgtcgat tkgaatttgg atgcgtgacg tcacactgct gcgsctggct tttcaagaat      1260
     tggagtgctg ctactcgttt ttccgggtaa attaagaaag tatatgcctg gcgaagctag      1320
     gccttagcag tatactacac cgcatctctc ttttctgctg tattgcattg acgacgacaa      1380
     catggtttta cctggtggag catcggcaac caaggcgccg actatgaggg cgttgacggc      1440
     gaggctgaag gaaatccatc tgtccttcaa cgacattcac cgcttcactc agaagttttc      1500
     tgaagccacc agcataacmg aggtggaaat acggatggcc aagctggatg agctctggga      1560
     aagctacagt gcaaccatgg tggaaatctt cgctcacgag gactataatc cagagaaaac      1620
     gtcactggaa aaggaacgtg tagaattcag cgaccagtat tatgaggtaa aaaccttcct      1680
     tatggacaag gtcaaggagg ttcatcagcc cttaattttg gagcaaacca gccgagctgg      1740
     tgatgggtca gcatcgaaca ccagcgatca cgttcgtctt ccgcagatca aactgcagac      1800
     gttcaacggg gacattgacg attggctgag ctttcgtgat cttttcactt cacttatcca      1860
     ttggaaggtg gatctaccgg aggtggagaa atttcattat ttgaagggct gccttcaagg      1920
     agaacccaag gctctaatcg atcctctccc aatcacgaaa gccaactatc aggtggcatg      1980
     ggactccctg ttgaaacgct ataataatag caagcagctg aggaagcggc aggtgcaggc      2040
     tatcttcaag ttaccaactc tatccaaaga atctggagct gatctacaca tcctagtgga      2100
     aggtttcgaa cgcatcgtgc agactctcga tcaggtcgtg caacagaacg agtacaagga      2160
     tctgttattt gttaacatcc tcacagcacg attggacccg gtcacgcgaa gggggtggga      2220
     ggaagtgtca tcttcgaagg agcaggacac tctcgaggac ttattcgaat ttttgcgacg      2280
     tcgaatccag gttttggaca gtcttccacc aaaatccacc gacactaggg gagtcggtca      2340
     gttgcaacag caatcgaagt caaggactca attcatgaag gctagctaca gctcaaccca      2400
     atctaaccaa gcatctaggg gacgctgcgt ggtctgctct tcggaccatc ttctctacca      2460
     atgtaacgaa ttccaacaaa tggcagtttc ggatagggat ggtctcttga aatcccatgg      2520
     actttgtcgg aactgtttcc gggtgggaca ccaagccaag gattgccatt caaaatactt      2580
     ttgtcggaac tgtaaagggc gtcaccatac tctagtctgt tttaagcgag ataaggaacg      2640
     agaaaccaag gttgcggccg ttgctggggg caacaagccg tccaattcca aaaaccaaca      2700
     ggaaccatcc aacactcaag tggctaatgt ggcagccacg gaaactgcag tgtccgctgc      2760
     agctcaccaa catccaacgc aagttcttct ggcgacagca gtagtgatga tcgaggacga      2820
     cgtaggcaat cattatcctg ctcgtgcaat gctggattcc ggatccgaga gtaattttat      2880
     tacggaacga ctgagtcaac ggttacaagt ccatcgagat cgggtagaca tttcggtggc      2940
     aggaattggc caggtggcca ccaaggttcg acaaaggctc agagcggttc ttcggtcacg      3000
     agtttcggac ttttctcgtg agttagactt cctagtcctt ccaagggtta cagtgaacct      3060
     cccaacgacc accatcaaaa cggatacttg gacactccca agtgggattc aactggcgga      3120
     tcccacattt ttcgaatcga gcgcggtgga tctcgtactc ggtatcgagt gttttttcga      3180
     ttttttcgaa accggaaata ggatttccct gggggagcaa ctcccagctt taaccgaatc      3240
     cgtatttggt tggatcatca gtggtggtat ctcgattcca gctcgttctc ttcagatcag      3300
     ctgcaacggt tccacgttgg ataacttgga tagcttgatc actcgctttt ggtcctgtga      3360
     ggaggtggaa tcaggcaagg cttactcacc agaagaggca cgctgcgaga agtggttctc      3420
     cagtacagtt caacgggaca ctaacggtcg atacacggtc gctttaccaa aggtggaaga      3480
     cgctgtgtca agattgggtg agtcgaagga catagcgttc cggcgtcttc taggaaccga      3540
     aaggaggttg gctcgggatc catcgctccg agaacagtac gttggtttca tggcagaata      3600
     tcttgaactc ggccatatgg aaatggtaga cgaggctagg agtaattcaa ccaagcggtg      3660
     ttacctacca caccatcccg tggtgaagga ggcttcaacc accaccaaag ttcgggtagt      3720
     cttcgatgct tcctgtaaaa cggcaacagg agtatcgctc aacgatgtac ttctggtagg      3780
     gccagtagta caagaggatc ttcggtccat aatcctccgc agtcggacca aacaaataat      3840
     gttggtatcg gatgtcgaaa aaatgtttcg ccaaatcatc gttcgcccgg aagaccgccc      3900
     acttcagtgt attctctggc gaaattcacc atcggaagac gttcgttcgt atgagttaaa      3960
     cacggtgacg tacgggacga agccagcgcc ttttttggcc actagaacac ttcatcagct      4020
     agctctggac gaagaagggc gatttccgct cgcggcccta gcggttatgg aagacaccta      4080
     tatggatgac gtcattacgg gagcgaatga tgtacaaact gctacggagt tgcagattca      4140
     gttgaatacg atgttgtcag gaggaggatt tcaactacgg aaatgggcgt cgaactgccc      4200
     tactgctcta gcagggattc cccaggaaaa cttggcaatt cgaactccca atggcatcaa      4260
     tttggatcca agtccttcgg tgaaaacttt agggttgacc tggtttcctt ccacagacac      4320
     tctaggattt cagtttacca ttccctccct ggacgttgac gaaatcctca ccaaacggac      4380
     cattttgtca gtgatcgcaa ctttattcga tccattaggc cttctgggag ctgttattac      4440
     tacggcgaag atatttatgc aacagttgtg gaccatacgt gatgaaaatg ggaaatcact      4500
     cgactgggat cagtctttac cttcaacggt gggtgaggca tggaggaaat ttcacgaact      4560
     gttaccgctg ctcaatcaac ttcgtatcga acgttgcgtg atcatcccga aagcagtttc      4620
     gatcgaaatc cactgttttt ctgacgcctc ggagaaagct tatggagcct gtctctatat      4680
     ccgtagcaca gatgcatccg gaaggatcag ggttcaacta ctttcctcta agtcaaaggt      4740
     tgctccactt aaatgccaaa ctatacctcg tttagaacta tgcggagcag ttctgggagt      4800
     acaattattc gaaaaggttc gtgaatcaat aagaataaca gcaaccagct acttttggac      4860
     ggactctaca tgtgttctgc gttggataga agctcttccg accacttgga cgacgtttgt      4920
     cgccaatcgt attgccaaaa tccaaactat caccgaaggg tgtcggtgga gtcatgttcc      4980
     tggaacacaa aacccggcag atctgatatc acgcggtata actccccaag acatcctgga      5040
     aaatcgattc tggtggcaag gacctgcatg gttgcaggat gacccagatc aatggcccaa      5100
     atcaccggac atatcatcaa taagggaggt tgacgaggaa aaacgacgca cagtcatcgc      5160
     aggaacggtt tccacagtcg tcgagttcaa taacatgtat ttccaaaaat tttcatcata      5220
     ttccgatctc gttcgtcgca ccgcgtattg gttgcgtcta atgaaactgc tccgattacc      5280
     atcttcgcaa agaagtgacc atggattcct gactacgtcc gagctacggg aggcagaaaa      5340
     cacattggtt cgtcttgtac aaaaggaagt cttcgtcgag gaattaaaag ccctctcaag      5400
     ggctgaacca gttcctaaag gatcacgact acgttggtac aacccgttcc tcacaaaaga      5460
     tcagctgctc aaactaggtg gacggctgaa gcactcccta gagccagaag aagcgaaaca      5520
     tcccgtagta cttcccgctc gacatccgtt tactcgatta ttactccagc actaccacga      5580
     acgtttgctt catgcggggc cacagttaat gttgagtgta gtaagacttc gtttctggcc      5640
     gctaggaggt aggagtgttg tccgcaatac tataaataag tgccaaaaat gctttcgttc      5700
     caagccatcc ccgattcagc aatttatggg agatttgccg gccgcacgag ttgtgatatc      5760
     tcgtccattt tcaaacagtg gtgtagacta ctttggcccc gtttatcttc gccctgttcc      5820
     acgtcgagga gtagtaaagg cctacgtagc tattttcgtt tgcctatgta ctaaggcagt      5880
     tcatttggaa ctcgtgtcag acctatccac tgaccgcttt ctacaggcac ttcgtcggtt      5940
     tgtagcacgg agaggtcgtt gctcaaatat ttactccgac aacggtacaa attttgtcgg      6000
     cgcacgcaac aagctacaag atctcctgca gctgctaagg aatcgcgacc ataacgatgc      6060
     tgtagcgaag gagtgtgcca aggacggcat tcaatggcac tttatcccac cgagcgctcc      6120
     ccattttgga ggcctatggg aagcagccgt cgttcatcta aacatcatct gctgcgagta      6180
     ttgggtgaga caccggtatc accagaggat ttcagcacgc tgctaaccca ggttgaagct      6240
     tgcctcaatt ctcgccccct tacgcctctg tccgacgacc ccaacgacct tgaaccattg      6300
     acacccgctc acttcctaat cggctcatcc cttcaatcaa tcgccgaacc agatttggga      6360
     gaactaccag ttaaccgtct ggacgtcctg caacttactc aaaggaggtt gcaagatttc      6420
     tggaagagat ggcgcagaga atatctctgc caattgcaag ctagaacgaa gcgatggcag      6480
     cctgcggttc aggttgaagt aggcaagctt gtggtcatca aggacgataa tcaaccccca      6540
     atgaaatgga gaatgggacg catctctgaa gttcatcctg gtagagatga tattgtcaga      6600
     gtagtgacat tgaaaactgc caatggattc ttgaccagac cggtcgaaaa gatctgtatc      6660
     ctgccgcttc cagaagatga gagtgtgaag ccagctgaaa aagtcaatcc atctcagtag      6720
     ccacctttcc tttcccacca tcccatcctg tcgaagagga tctgctttct attttcagaa      6780
     attagaaatt tcagggtggg cgaggg                                           6806
//
ID   BEL-768_AA-LTR repbase;    DNA;    INV; 714 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-768_AA-I;
KW   BEL-768_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-714
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-714
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 88-88 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 714 BP; 209 A; 164 C; 163 G; 178 T; 0 other;
     tgtttatgag tacgacgaac tccacacaca accctgtcac ctctgtcggc tatcgcaaca        60
     gcagctcaaa cgatagcaat atgaacagct accacgaatc catacagcca acaccatcat       120
     ctaattccac ggtcaacggt ggctacgcga tcgactctct gcgagaaggt agattctcgc       180
     caatacatgg tcaaaaccac accaacgatc atcatcacca tcattgaaga gtccaatccc       240
     atcggagtga taaggaaggt ccgataagag cggtgagagt tgctcttgac cacgaataac       300
     atcgcagcac ggcatccgag gatagataga tgcaacgatc gggagcgatg accagtgcag       360
     atcaagcaag caaccgggca gcatgggcgg tagacccacg gtcgtttttt aatccgtttt       420
     ctgtttttaa ctgtgttagt gtgcattagt attaagaaga aaattaaata gtttaagttc       480
     aataaaccgg gtttgcatgt cgccgattat ttaaataaat gtagtgtttt aaactgaccg       540
     tcgcgtgttc gttagtttaa ccgactaccc gaagaaacga cctggatttg aagattaagt       600
     gcatgcgatg gacactttgt gtggttggaa cgaataattc aacttcgatg ttgggggctg       660
     gaaattgacc ggattcctga gttatcatcc gaggtaattg gacctccccc ttca             714
//
ID   BEL-769_AA-I repbase;    DNA;    INV; 5453 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-769_;
KW   BEL-769_AA-I; BEL-769_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5453
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5453
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5424
FT                 /product="BEL-769_AA-I_1p"
FT                 /translation="MDALRIRRDVLFERMKWEQANARVVGSRNPPPSELHE
FT                 RLQKLTEMAEMFDKVQSEIEESTTALSEMAAIFNHRVEFDNLYYETKNFYV
FT                 TLLGDDGPAGISSCNSVASSDEHKDDLREAVRLLVESQRVMATTQTAASSS
FT                 VQQLAGQMQAAFRPLSGGSPFQEVPVELKLPTFSLPVFHGDRRQWNSFKDL
FT                 YVSCIHSKNLKDSVKLQYLISHLDGEAKKLVSAFSITDANYREVWDKLNDH
FT                 YDKKRYIVTALVKEFLDQPSVNAPSLVGLRKLASTSDEVVRQLKALGPAYE
FT                 SRDPWLIHLLLDKLDRETRSMWAQKVVDEDNPTFREFLTFLERRCDAMETC
FT                 ASFAKKSNEAMKKDTERGSKTVFSSKAIQGFHASTQSSCPLCSQAHTIYQC
FT                 ASFKEMVTEDRRVFVQRIKLCYNCLKASHISRECTSTMMCKNCKQKHHTLL
FT                 CLQNAIEPQDSTQRIESAVTIQQQDDQASKAENEDSVASYVTRLETCRATS
FT                 FASMLPTAVVKVLGKDNEFHEIRAIIDSACMNSMITKQAFHRLGLKRRNAN
FT                 VLVSGISSTSSSKTEGVVTLQIASRFDKAIAIVVDALILNRLVSDQPSQRF
FT                 DIDTNPLSGQPLADPHYNECGKVDLLLGVEVFFSIIEPGKLVDLQGVPFAQ
FT                 NSIFGYLVGGRFSAATQNTKTSTVINLVSEVNLDQTLRKFWEVQEVPGAYL
FT                 LTEDEQRAVDHFNSTVSRDTNGRYVVRLPFDNTKPELGESATAAIRRFCAM
FT                 ERKFSVDPQLKEMYKQFMTDYLALGHMEKVPSAEVNVPTNDCFYLPHHAVW
FT                 KEDSSTTKLRVVFDASSKSASGVSLNDRLLVGPNVNEPLFNVCCRWRSYRF
FT                 AFTADAEKMYRQIRIDHRDKDFLRIVWREDPSRPLEHYRLLTVTYGTGCAA
FT                 YQAIAALRKTADDNQEQYPRAAERIPKNFYVDDLFSGADTIEDAMVLRKEI
FT                 VDVLTSAGFNLRKWHSDNAKLLGSVENSNEPYQVKLADEYDEVKALGIRWM
FT                 PQDDFFCFKVSFDIDSANTKRQLLSDTSRLFDPFGWIAPVIVRAKIMFQHL
FT                 WLYDLQWDDPLPACICDEWIELKETLHHIEAIRINRWIPHYDNTLELHGFA
FT                 DASEAAYAAVIYARSKDESGNVYVNIVAAKTKVAPIQQISLPRLELLAAEL
FT                 LVDLMVKVMESFSHLTVELHAWTDSCIVLQWLSSHPRKWKTFIANRTSKIL
FT                 DVVARNRWRHVTSAENPADCASRGVSPAELVGHSLWWTGPSWLKENALSFE
FT                 STESTIENFFVMDDELLERRPNVTCLVTSVKSKSTRDIENFLLNRFSNLNR
FT                 IRRTLCWVNRFVNNARSKLNGGQRITGAITAKELDDACLQLTRAAQWDSFG
FT                 QEFVALESDSALPNNSKIKTLYPFIDSGGNLRVGGRLQNSTQPYDIRHPLI
FT                 LPKQHRYTLLLVMEIHVNNLHAGPNLMIATLNQRYWIVGCQAVIRTFIDNC
FT                 VRCCRMKAKTSKQLMGCLPNVRTQPARPFVHVGVDYAGPLNIRSSNLRTAR
FT                 MTKGYVAVFVCLSTKAVHLEAVTDLSTDAFIAALKRFISRRGLCTEIWSDN
FT                 GTNFVGAEREIRRYLQSPEFNGSVGRFLGDLKIKWTFITPSAPHMGGIWEA
FT                 AVKSMKKHLRAVIGNTTMTFEAFCTILAQVEACLNSRPLCELSTSIDSCEA
FT                 LTPGHFIIGQSINMLPQPDVSQVQENRLKLWERIQKYSIEIWNRWRNEYVA
FT                 TLQPRSKWQTLQQNLQSGQLVLIKNENTPPAVWELARVVKTHPDQFGIVRT
FT                 VTLRRGQMEYHRPVHKLVLLPCD"
XX
SQ   Sequence 5453 BP; 1522 A; 1207 C; 1316 G; 1408 T; 0 other;
     tggtcctttt gaaccagata ttttgcgaat cagtgacgaa agatggatgc tcttcgaatc        60
     cgacgcgacg tactcttcga acgaatgaag tgggagcagg caaacgcgcg cgtagtggga       120
     agccgtaacc ctccacccag tgaactacat gagcgattgc aaaagctgac ggaaatggcg       180
     gaaatgttcg acaaagtgca aagtgaaata gaggaaagca caacggctct cagcgaaatg       240
     gccgccattt tcaaccatag agtggaattc gacaacctct actacgaaac gaaaaatttc       300
     tacgtaacgc ttctcggcga tgatggtcca gccggaattt ctagttgtaa cagtgttgcc       360
     agttctgacg agcataagga tgatttgagg gaagcagtca gattattggt ggagtctcaa       420
     cgcgtaatgg cgacaactca aaccgcagct tcatcctcag tgcaacagtt agctggacaa       480
     atgcaagcag ctttccgtcc gttgtctggt ggttctccgt tccaggaagt gccagtcgag       540
     cttaagctgc caacattttc gcttcccgtt tttcacggtg accgaaggca atggaattcc       600
     ttcaaggacc tttacgttag ttgtatccac tccaaaaact tgaaggattc agtgaagctt       660
     cagtatttga tatctcatct ggatggcgag gcgaagaaat tggtgagcgc ttttagtatc       720
     acggatgcga actacagaga ggtgtgggat aaattaaacg accactacga caagaaaagg       780
     tacattgtca ctgccctggt taaggaattt ttggatcagc catcggttaa cgctccctct       840
     ctcgttggac tacggaaact tgcttcaacc tccgatgaag ttgtgagaca actcaaggcg       900
     cttggtccag catacgagtc tcgagatcct tggttgatac acctcctgct agataagctt       960
     gatcgggaga cgcgttcaat gtgggcccag aaggtagtcg atgaagataa tcctaccttc      1020
     cgggagtttc taacttttct cgaacgaaga tgcgacgcga tggagacttg tgcatccttt      1080
     gcgaagaaga gtaacgaagc aatgaagaaa gacactgaaa gaggttcgaa gaccgtgttt      1140
     tcgagcaagg ctattcaagg ttttcacgca agtacccaat cgtcctgccc cctgtgttca      1200
     caagctcaca ctatttacca gtgtgccagc tttaaagaaa tggtgacaga agatcgtcga      1260
     gtatttgttc agcgaatcaa actttgctac aactgtctga aagcatcaca tatctcacgg      1320
     gaatgcacat ctacaatgat gtgtaaaaac tgcaagcaga agcatcatac gcttctctgt      1380
     ttgcagaatg cgatcgagcc acaggattct acccagcgta tcgaatctgc agtgacgatt      1440
     caacagcaag atgatcaggc ttcaaaggcg gaaaatgaag attcggtggc atcgtatgtc      1500
     acacgtctgg agacctgccg tgccacaagt tttgctagca tgttgcctac ggcagtcgtc      1560
     aaggtcttgg gaaaagacaa tgagttccat gaaatccgag cgatcatcga ttctgcttgt      1620
     atgaactcga tgataactaa gcaagccttt caccgtctcg gtctgaagag acgcaacgcg      1680
     aacgttttgg tcagcggcat atcttcaacc agttctagca agacggaagg agtagtaacg      1740
     ctgcagattg catcacggtt tgacaaagcg attgcgattg tggtagatgc gctaatcctc      1800
     aaccgcctcg tctcggatca acccagtcag aggttcgaca ttgataccaa tccactttct      1860
     ggacaacctc tagctgaccc ccattacaat gaatgtggca aggttgatct actactagga      1920
     gtagaagtgt ttttctccat aatagaacca ggcaagctgg ttgacctcca aggcgttcca      1980
     ttcgctcaaa attcgatttt cggctatcta gtgggtggac gattcagcgc tgcaacacag      2040
     aataccaaaa ccagtactgt catcaatttg gtaagtgagg tgaacttgga tcagacattg      2100
     cgaaaattct gggaagtcca ggaagtacca ggcgcttact tattaactga agatgagcaa      2160
     cgtgcggtgg atcatttcaa ctcaactgtt tcacgcgata caaatggaag gtacgttgtt      2220
     cgccttccgt ttgacaacac taaaccagag cttggcgagt cagctactgc tgccattcgg      2280
     cggttctgtg ctatggaacg aaagttcagt gttgatccac aactcaagga aatgtataag      2340
     caatttatga ctgactattt ggcactcggt catatggaaa aggtaccctc ggctgaagta      2400
     aatgtaccaa cgaatgactg tttttaccta ccgcaccatg ccgtgtggaa ggaagatagc      2460
     tcgacaacca aattgcgtgt agttttcgac gcgtcgagta agagtgcatc gggtgtttcg      2520
     ctgaacgatc gattgctggt tggacctaac gttaacgaac cactcttcaa tgtttgctgc      2580
     cgctggcgtt cttatcgttt tgcattcact gccgatgcag aaaagatgta ccggcaaatt      2640
     agaatcgatc acagagacaa ggatttcctt cggattgttt ggcgtgaaga tccttctcga      2700
     ccattggagc attaccgatt attaacagtg acttatggaa ctggatgtgc agcataccaa      2760
     gcaatcgcag cattgaggaa aactgccgat gacaaccagg agcaatatcc aagagctgca      2820
     gaacggattc ccaaaaattt ttacgtggat gatctctttt ctggtgccga tactatcgaa      2880
     gatgcaatgg ttctacggaa ggaaatcgtc gacgtcctga catcggctgg tttcaatttg      2940
     cggaagtggc atagcgacaa cgcaaagctc ctaggaagtg tggagaacag caacgaaccc      3000
     tatcaagtta aacttgctga tgaatacgac gaagtgaagg ccctggggat acgatggatg      3060
     ccacaagatg attttttctg cttcaaggtt tcgttcgaca ttgacagcgc aaatacaaaa      3120
     cgacagttgc tgtccgatac gtcaaggttg tttgacccat ttggttggat cgctccagtg      3180
     atagttcgag caaaaataat gtttcagcat ctgtggctgt acgatttgca atgggatgat      3240
     cctctgccag cctgcatttg tgatgaatgg atagagctga aggaaacgct gcaccacatt      3300
     gaagcaattc gcataaaccg ttggatccct cattacgaca acacattgga acttcacgga      3360
     tttgcggatg cctctgaagc tgcttatgct gctgtgattt acgctcgttc taaggatgaa      3420
     agtggaaatg tctacgttaa tatcgttgct gccaaaacta aggtggcgcc aatacagcaa      3480
     atatcgttgc cgagactcga gttgctggct gcagaattgc tggtagattt gatggttaaa      3540
     gtcatggaat cattttcaca tttgacggtc gaattacatg cgtggactga ttcgtgtatc      3600
     gtgctacagt ggctatcatc tcacccacgg aaatggaaga cctttatcgc taacaggaca      3660
     tcgaaaattc tagacgttgt tgcaaggaac cgttggcgtc acgttacatc tgcggaaaat      3720
     ccagctgact gtgcctcacg tggtgtttcg ccggctgagt tagtgggaca ttctctttgg      3780
     tggacaggac cgagttggct gaaagaaaac gcattatctt tcgagtcaac tgaatcaacg      3840
     attgaaaatt tctttgtaat ggacgacgag cttttggagc gacgaccgaa cgttacatgt      3900
     ctggtcacta gtgtcaaatc aaaatcgact cgtgatatcg aaaattttct tctgaatcgc      3960
     ttctcgaacc tgaatcgtat tcggcgcaca ttatgttggg tcaatcggtt cgtaaacaac      4020
     gcaagatcta aactgaatgg tggtcaacgc ataacaggag ctatcactgc caaggagtta      4080
     gacgatgctt gtctccaact taccagagct gctcaatggg atagttttgg ccaagaattt      4140
     gtggctcttg aaagcgattc tgcgttaccg aacaatagta agattaaaac attgtatcca      4200
     ttcatcgact ctggcggaaa tttaagagta ggtggtcggc tacaaaactc aactcaaccg      4260
     tatgatatac gccaccctct tatattgcca aaacaacatc gttatacttt gttactggta      4320
     atggaaatcc acgtaaacaa tctacatgca ggaccgaatt tgatgattgc tacattgaat      4380
     caacgatact ggatcgtggg ttgccaggca gtcattcgca cattcattga caactgtgtg      4440
     cggtgttgta gaatgaaggc caaaacatca aagcaattaa tgggatgttt accaaatgtt      4500
     cgtactcaac ccgctcgccc atttgttcac gttggagtgg attatgcagg accgctaaac      4560
     attcggtcca gcaacttgcg tactgcaaga atgacaaagg gatatgtggc cgtttttgta      4620
     tgtctgtcaa ctaaggcggt tcatttggag gcagtaactg acctgtccac agacgccttc      4680
     attgctgccc tcaagcgttt catcagtcgc cgtggtttgt gtaccgaaat atggtccgat      4740
     aacggtacta acttcgtcgg cgccgaaaga gaaataagaa gatacttaca gtctccagaa      4800
     ttcaatggtt cagttgggcg attccttggt gatttgaaga tcaaatggac atttatcact      4860
     ccctctgcac ctcatatggg cggtatatgg gaggcagccg ttaaaagtat gaaaaagcat      4920
     ttgagagctg taattgggaa cacgactatg acgtttgagg ccttttgtac tattctggca      4980
     caagtggagg cgtgcttgaa ctctagacct ctatgcgagt tgtctacatc tattgattca      5040
     tgcgaagccc tcacaccggg gcattttatc atcggccagt ctatcaatat gctaccacaa      5100
     ccagatgtca gccaggtaca ggaaaatcgt ctgaagcttt gggaacgtat ccaaaagtat      5160
     tcgattgaga tttggaaccg ttggagaaat gaatacgtag ccactctcca acctagaagt      5220
     aagtggcaaa ccttgcagca aaatctccag tccggccaat tagttctgat taagaacgaa      5280
     aatactccgc ctgccgtatg ggagctcgcc agggttgtga aaacccaccc cgatcaattt      5340
     ggaattgtcc gtacagtaac acttcgtcgc gggcagatgg aatatcaccg accagtccat      5400
     aagctggtat tactaccgtg tgattgaggc aaccgcctca agggccggga gga             5453
//
ID   BEL-769_AA-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-769_AA-I;
KW   BEL-769_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-237
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-237
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 161-161 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 237 BP; 61 A; 54 C; 44 G; 78 T; 0 other;
     tgtttgcgcc tctgtccttc ccctcatctt ttttgacgtt caacatccgt ccgaccgtac        60
     cgacgatgag agaagaaaga atgattcagt aaaaattcaa ccattgtaga gcaaagagta       120
     aataaactac agtccgcgag aaaaggtttt ttcctataat ttattgaacc ttccgatccg       180
     gttttggctc ttactctggt atttaagcct tcgtcgttcg tatcgcgttt tgttaca          237
//
ID   BEL-76_AA-I repbase;    DNA;    INV; 5930 BP.
XX
AC   supercont1.33;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-76_AA_;
KW   BEL-76_AA-LTR; BEL-76_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5930
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.33; Positions 3614609 3608680.
XX
CC   Positions [4977-5561] - Integrase core
CC   'CTTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           693..5930
FT                 /product="BEL-76_AA-I_1p"
FT                 /translation="MERNLEVLVDRRDMLVDKLMRMNDSLDAESVSIHLLK
FT                 LFEENLRRNADEFEKAYCDISLLLPKEQRAEHRQEYTNFEQLHNEVYVKLQ
FT                 GRIAQTELTNKLAELPNASAVAAAPNPVYVQAAASVPHLQAPFPTFNGDPQ
FT                 NWYSFKNLFQSIMSRYTQETPAMKILHLRNALTGEAKDKIDQDIVNNNDYD
FT                 AAWRILEDAYEDKRLILDTHIDAILDCPKVAKENRGKSITKLVEICAKHID
FT                 ALAGHGYPVEGLAELVLVNIVYKKLDKETQEQWELKIGVGELPDFVEFMEF
FT                 LRERGRVLQRTSRFQQHPMQQPSAPPSKQRQAIGQKPQPPLKSFVQTTTEV
FT                 CTCCKEEHPIFRCSTFKNMTLSERKSVVTKGNLCFNCLKAKHRVSECQSES
FT                 RCKVQGCGRKHHSLLHSSDTRATSVPEQSDEVKQAQSTIPTSNQATVTEQQ
FT                 NVAVSLCANVDRSKRQVLLSTAVVMLVGHGDTIIRCRALLDSGSDSNLITE
FT                 KLARKLKLKMDHVNLPVCGLNDIQTQVEYQLSTKFISCINSFASSILDFLV
FT                 VKRITSSLPVIEVDTRSWPLPPGLKLADPQFHTPGEIDLIIGNEIFFDLIK
FT                 EGRHKIGNNSLTLTETELGWVVGGSVPTRKAKPCPRVCQLNRYEEELHKTM
FT                 SKFWEIESVHPESELTAAEAAVEEHFTKTHTRDDKGRYVVRLPFNNQQGQL
FT                 GDSYNNARKGLDKLMMALSKNPSKHDEYSSFLMEYLTLGHMKEVEPINDGG
FT                 YYIPHHAVYKMSSSTTKTRVVFDASAKTTSGLSLNDTLSVGPTVQNDLLSI
FT                 ILKFCTHQVVLTADIPKMYRQVRLHTEDCKYQRILWLDDDSKLKVYELQTV
FT                 TYGVASSPHHATRALVQLASDEGKDFPLASKVIIEDSYIDDFLTGGSSTAE
FT                 VIQIYTELTQLLHRGGFGVHKFCSNSAEVLQAIPVELHEKQVHFEDADINN
FT                 SIKTLGLIWNPMEDYFAFRVPRPVDMNWTKRIVLSEISKLFDPAGFLGPIV
FT                 TTCKLVMQDVWRQGVPWDELLPDELSYRWRLIREQMPAINEMKKQRCLISK
FT                 DAVSIQLHGFSDASMRAYGGVLYIRSVDRDGTINVNLVASKSRVAPLKMQT
FT                 IPKLEMCGAKLLAELTQKVVSSMQVPFDDVILHCDSKIVLCWLKKSPLTLK
FT                 QFVSNRVATTVELTRGYTWRYIPTGHNPADVISRGALPENLLHNELWWSGA
FT                 PELWESQLPEDLSEPFDESELPEVKTNKVLAVVKSEPPINLTRCSNYRRML
FT                 RAWVYIERFINLVVHKVSSTSNITADEMVRSEKNMLLVLQREVFGDLLKLL
FT                 KEGSTKRHPLSNLAPFVGDDGLIRVGGRLKYSVIPYEGKHQVLLPERHHIT
FT                 TILIRKLHEEHFHVGQNGLLAIVRERYWSLRAKAVIKRVTSKCQVCAKQNP
FT                 RPGSQFMGNLPESRVNPSPPFSKVGIDYAGPFMLKTGGRGSRLAKAYVVVF
FT                 VCMAVKAIHFELVSNLSTDNFIAALQRFSSRRGLPTDIHSDNGTCFVGANH
FT                 ELAALRDLFNDQQHQRKLDEFCSLKGIRWHFIPPRSPHFGGIWEAGVKSMK
FT                 HHMKRVVGETKLTYEEMITFLAQTEAILNSRPLCPMSEDPNDMAVLTPSHF
FT                 LINRSAVAFPEPSYEDEKVGRLSRWQHVQAMQQHLWSRWSREYLHHLQSRQ
FT                 KWHDGVKEFKVGSLVLLIDENLPPQQWRRGRIIATHPGDDGAVRVVTVKTS
FT                 SNSFKRAITKVALLPSVEPEASTGGE"
XX
SQ   Sequence 5930 BP; 1645 A; 1414 C; 1504 G; 1367 T; 0 other;
     ttttttggtc cttcgagccg gatcttcgga gaatttggag tggttcccgg tttccgtcgg        60
     aacgccatta gcccggtgct aatttcggat aagtgtgaag tgaactttgg tggagcttag       120
     ccaccagctg ttccggacag ccgccatctt ggtgaaattg gtgaacagtt tgtcccaact       180
     ggcgaagaaa aatcggtcgg cgttgcgcca ccaagtgtgt gcccgtggca cggaagaagc       240
     tcgccatttt ggcaaaacgg agttgtgtgc gtgtgctcgt agcactgaag aaagtggagg       300
     ccatcttggc gaacgaaaaa tgttgccagc tgcctgcgtg tgtgtccgtg acaacacgcg       360
     tcagtgaaaa agtgtgtgtg tgcccgtggc actgaagcaa tcgtggtagt catcctgcga       420
     acgaatcggt tcaaccggtt gaaccgaagc cattttgaca gttaagcctg tcatgtgtga       480
     aagtggtttg aaaacaaaca aaacaaaagt ggccatagaa gaggcaaaga aaataattac       540
     gaatgagtga ttctgagacg ccccgtggac cgttctcaaa attcatcccg agaagaaaca       600
     ttctggacgc tttatcggga ccttaaagca gtgtagtgaa aactatagcg gaacagaaag       660
     cagaaaaaca agcccaagaa aggagtcgca tcatggagag aaatttggaa gtgctggtcg       720
     atcggcgaga catgctcgtc gataaactca tgcggatgaa tgattcattg gacgctgaat       780
     cggtcagtat tcatttgttg aagctgtttg aggagaatct acgccgaaat gctgacgagt       840
     ttgaaaaagc gtattgcgac atttctcttc tgctgccaaa agagcaaaga gcagagcatc       900
     gacaagagta caccaacttc gagcagctcc acaacgaggt ttatgtcaag cttcaaggga       960
     ggatcgctca gacggagttg acgaacaagc tggcggaact gccgaacgca tcagcggtcg      1020
     ctgcggcccc aaaccccgtt tacgtccaag ccgcagcatc agttccccat ctgcaggctc      1080
     cgtttccaac gtttaatggt gatccgcaga actggtacag ttttaagaat ctgttccaaa      1140
     gcatcatgtc gcggtataca caggagaccc ctgccatgaa aatattacac ctacgaaacg      1200
     ccctcaccgg cgaagcgaag gataagattg accaggacat tgtaaataac aatgactacg      1260
     atgctgcctg gaggatcttg gaagacgcat acgaggacaa gcgattaatt ttggacaccc      1320
     acatcgatgc catcctggat tgcccaaaag ttgcaaaaga gaatcgcggc aaatccatca      1380
     ccaagctggt cgaaatttgt gcaaaacaca tcgatgcatt ggctggacac ggctatccag      1440
     ttgaaggtct ggccgagctg gtgttggtga atatcgtgta caagaagctc gacaaagaaa      1500
     cgcaggaaca atgggagctg aaaattggag tcggagagtt gcccgatttc gttgaattta      1560
     tggaattcct acgggagcgt ggtcgtgttc tgcagcgcac aagccggttc cagcagcatc      1620
     caatgcagca accgtcagct cccccaagta agcaacgtca agcaattgga cagaagccgc      1680
     aacccccact caagtcgttc gttcaaacca caacggaagt ttgcacctgc tgcaaagagg      1740
     agcacccaat cttccggtgc tcaaccttca aaaacatgac cttgtcggag cgcaagtccg      1800
     ttgttactaa agggaattta tgcttcaatt gtctgaaagc gaaacatcga gtgagtgaat      1860
     gccaatcgga atcccgatgc aaggtgcagg gttgtggtcg caaacaccac agtcttctgc      1920
     attccagcga tacccgtgct acctcagttc cagaacaaag tgatgaagtg aaacaagccc      1980
     agtcaacgat tccaaccagc aatcaagcaa ccgttactga gcagcaaaat gttgcggtgt      2040
     ccctttgtgc taacgtcgat aggagcaagc gccaagtact actctcaacg gcggtagtga      2100
     tgctagttgg acacggcgat accatcatca gatgtcgtgc cttgctagac tcaggatctg      2160
     atagcaacct aatcaccgag aagctagcac gcaaattgaa gctgaaaatg gatcacgtga      2220
     atctaccagt ttgtggtcta aacgacatac aaacccaagt tgagtatcag ttgtccacga      2280
     agttcatttc ctgcattaat tcttttgcct catccatcct agatttcctg gtcgtaaaac      2340
     gaatcacatc gagcttgccc gtgattgaag ttgacacccg atcctggccc ttaccaccag      2400
     ggctgaagct agctgaccct cagttccaca cccctggaga gattgacctt attatcggga      2460
     acgaaatttt cttcgatctg attaaagaag gtcgccataa gatcggcaac aactcgctta      2520
     cgctaactga gacggaattg ggatgggtcg ttggcggatc ggtgccgacc aggaaagcca      2580
     aaccatgccc gcgtgtgtgc caactaaacc gttatgaaga agagctgcac aaaacgatgt      2640
     cgaaattttg ggaaatagaa tccgtccatc cggagtccga gctgacagca gctgaggctg      2700
     ccgttgaaga acacttcact aaaacccata ctcgtgatga caaagggcgg tatgtcgtcc      2760
     gacttccgtt caacaaccaa cagggtcaac taggcgactc ttacaacaat gcccggaagg      2820
     gtttggacaa actcatgatg gcgctgtcca aaaatccatc gaagcacgac gaatattcct      2880
     catttttgat ggaatacctc acattaggac acatgaagga agtcgagccc atcaacgacg      2940
     gtggctacta tattccgcac catgcagtct ataagatgtc cagctcgact actaaaacaa      3000
     gagtagtatt cgatgcatca gcgaagacca cgtcaggttt atcgttgaat gacacgctat      3060
     ctgttgggcc cactgtgcaa aacgacctac tctcaatcat attgaaattc tgtacacacc      3120
     aagtggtgct cacagcagat atcccaaaaa tgtaccggca ggttagactg cacacggagg      3180
     actgcaagta tcaacggatc ctatggctgg atgacgacag caagctaaaa gtgtatgagt      3240
     tacaaacggt aacgtacggt gttgccagct caccacacca cgcaacaagg gcactggtac      3300
     aattggcatc ggatgaaggc aaggatttcc cactggcgtc gaaggtgatc atcgaggata      3360
     gttacattga cgacttttta actggtggtt catcgacggc tgaagttatt caaatctaca      3420
     cggagctaac gcagttgcta catcgaggtg gattcggcgt acacaagttt tgttccaata      3480
     gcgccgaagt actgcaagcg attccagtcg agctgcacga gaaacaagtt cacttcgaag      3540
     atgctgatat aaataactcc atcaagacac ttggactaat atggaacccg atggaggatt      3600
     atttcgcctt ccgtgtcccc cggccggttg acatgaactg gaccaagcga attgtgttat      3660
     cggagatttc caagctcttc gatcctgctg gatttcttgg ccccatcgtc acaacatgca      3720
     aactggttat gcaggatgtt tggcgtcaag gtgtaccgtg ggacgaacta ttaccagacg      3780
     agctttcgta caggtggagg cttatccgtg aacagatgcc agcaatcaac gaaatgaaaa      3840
     agcagcgatg tttaatctcc aaagatgcag tgtccattca actccatggt ttttcggacg      3900
     catcgatgcg tgcctacggc ggcgtgctgt acatccgaag tgtcgacagg gacggcacca      3960
     ttaatgtgaa tttggttgcc agcaaatcac gcgttgcgcc tctcaaaatg cagacgattc      4020
     ccaaactcga aatgtgcggc gcaaaattgt tggcagagct cacccagaaa gtagtatcat      4080
     cgatgcaagt tccatttgat gatgtgatcc tccactgtga ctcaaaaatt gttttatgct      4140
     ggctcaaaaa atctccgttg acactgaagc agtttgtgtc gaaccgcgtt gctacaacgg      4200
     tagagcttac tcgaggatac acgtggcggt atattccaac cggccacaac cctgctgatg      4260
     ttatatcaag gggcgcgctt ccggaaaatc tcctgcacaa cgaactgtgg tggagtggtg      4320
     ctcctgaatt atgggaatcc cagcttccag aagatttgtc ggaaccgttc gatgagtcag      4380
     agcttccaga ggtcaagacg aacaaagtac tggccgttgt gaaatcagaa ccaccgatca      4440
     atctgactag gtgcagcaac taccgaagga tgctgagagc gtgggtgtac atcgagcgtt      4500
     ttatcaacct ggtggtgcat aaagtttctt caacatcgaa tattaccgcc gacgaaatgg      4560
     ttcgttcaga gaagaacatg ctattggtac tccagcggga ggtatttggc gatcttttga      4620
     agctgctcaa ggaagggtct accaagcgac accctctatc caatctggct ccattcgtgg      4680
     gtgatgacgg cctgatacga gttggaggcc gtttgaagta ttccgttatt ccctacgaag      4740
     gtaagcatca ggtgttactg cctgaacgac atcacattac gacgatcctg atacgaaagc      4800
     tgcacgaaga gcatttccat gttggccaaa acggactgct ggccatcgtc cgtgagcgat      4860
     attggtcgtt acgagcaaaa gcggtgatca aacgagttac ttcgaagtgt caagtctgtg      4920
     cgaagcaaaa tccaaggcct ggtagtcagt tcatggggaa cctaccggaa tcgcgagtca      4980
     atccctcacc gccattctcc aaggtgggta tcgattatgc tggaccgttt atgctgaaaa      5040
     caggaggaag aggttcaaga ttagcaaaag cgtacgtggt cgtttttgtg tgtatggcgg      5100
     taaaggcaat ccatttcgaa ttagtgtcta acctttcgac ggacaacttt atcgccgctt      5160
     tgcaacgatt ttcaagccgt cgtggactgc caactgacat ccattctgat aatggcactt      5220
     gcttcgtggg tgccaatcat gagctcgctg cattgagaga tttattcaac gatcaacaac      5280
     accaacgcaa gctggatgaa ttctgcagtc tcaagggaat cagatggcat ttcattcccc      5340
     cgaggagccc tcacttcggg ggcatttggg aagcaggagt gaagtccatg aaacaccata      5400
     tgaagcgagt cgtaggcgaa accaaactca cgtacgagga gatgatcaca ttcctggcgc      5460
     agacggaggc catccttaac tcacggcctt tgtgtccgat gtccgaagac cccaacgata      5520
     tggctgtgct tacaccatcg cattttttga ttaaccggtc cgctgttgct tttccggagc      5580
     catcgtatga agatgagaag gtaggacgtc tcagcagatg gcagcatgtg caagccatgc      5640
     aacagcactt gtggagtaga tggtcccggg aatatctcca ccatctacag agtcgtcaga      5700
     agtggcacga tggagtgaag gagttcaagg taggttcgtt ggtcctgctg atcgacgaga      5760
     atctgccccc acagcagtgg cgacgaggtc gaataatcgc tacacacccc ggcgatgatg      5820
     gtgctgtcag agtggtgaca gtaaagacgt cgagcaacag tttcaagcga gcaatcacca      5880
     aggttgcttt gttaccttct gttgagcctg aagcctcaac ggggggagag                 5930
//
ID   BEL-76_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   supercont1.33;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-76_AA_;
KW   BEL-76_AA-I; BEL-76_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.33; Positions 3608679 3608485.
XX
SQ   Sequence 195 BP; 56 A; 45 C; 39 G; 55 T; 0 other;
     tgtttgggcg cactgcgcaa ataatttgta accgtttcac tatctcaata tcattggccc        60
     atcaggcaac actgtagagg agaaaaatca gaataaatcg aaactttgtg aaccgaagac       120
     gcgcgtgttt gattctcccg tccagaacca tccaatttct gccgaattgt gttttttctg       180
     agctatcgac gaaca                                                        195
//
ID   BEL-770_AA-I repbase;    DNA;    INV; 6322 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-770_;
KW   BEL-770_AA-I; BEL-770_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6322
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6322
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..6321
FT                 /product="BEL-770_AA-I_1p"
FT                 /translation="MSEKASTTGSGRISAMEAIDRLYSSGAHGGAPEELVN
FT                 PLTNDPVVTEFGNLAIVNNAAREANWSAKSVASAAANTVMVTGPSLPSPQV
FT                 ASGSNTKTKTQQLGAIHKVKASGMNTKNPIQSVETVPYKKPVARENLNLRI
FT                 RITRFSHCEMCNERDTSSMVQCDGCDLWYHFSCVEVTSGIAERSWICPACV
FT                 ESEADAQLPGVSKTVPNKLPVRQGDSRKTTSKASSNRSQRRTALRLQMLEE
FT                 QKQLEQKYLEEKYRILDEEDDDDETVISDDEVGSLEMSKVQGWLMDTSKCG
FT                 EDDSGLVEEDGLEVQERRSGQHRQSTYVGAIGQRSTLQGFNPNQRSTPRPQ
FT                 VLEANRTRNIGLQNSSDCKNMFYQPSYRRSGTAVQFCQPLENQSIRQHVHS
FT                 VPVEEHTRLVNNPSRRGNTPAPTNQMLPTDGRNQTDSAYRFYRQPESDPRE
FT                 VEENVCILNRSQLAARQAVSKELPEFYGNPEDWPLFFSMYNSSTQMCGFTN
FT                 EENMLRLRKCLKGKALDAVRCRLLHPSNVNGVISTLRMLYGRPEAIIQASI
FT                 RKIRSLPSPQIEKLDTVVNFALTVENLVATIEACGIEDFVYNASLKIELVD
FT                 RLPPGLKLDWAKHSRNNPAPNLLEFSSWLYSLAEDASAVMHASAIASKGRG
FT                 IKHDGFINVHSDNEVDRLRSSQTPLILPSTSTTNCIVCKGTCSTIAKCKQY
FT                 EELSLDAKWDVVKDAKLCRKCLRKHNGSCRQQKSCGVDGCTFLHHPLLHNR
FT                 SQGTGNRSSSAETPTSSMASCNVHQMQTSEVLFRIVPVLVHGPKQVVKTYA
FT                 FIDDGSELTLMEDSLAEEIGVKGPRTSLCLKWTGGTKRVEADSQIINVGIS
FT                 TIEDVENPYRMNNVHTIQSLQLRPQTLVFSELLERFQHFKGLPVESYTNVC
FT                 PRILIGLDNASLGHAQKGREGKPYEPVAVKTRLGWVVYGCLSRVQQNVNYV
FT                 NVHAIEVCECNSTTDEHLHTAMKNYFALDSMGIAKPAKILRSSEDERAMEL
FT                 LERQTIKKEGRYESGLLWRYDDVRLPNSMGMAYRRWQCLERRMQRDRPFAE
FT                 VTRSKMIDYVEKGYVRKLSEAELNTRQQREWYLPVFPVLNPNKPGKIRLVW
FT                 DAAASAYGVSLNSLLLKGPDLLTSLLSVLIQFRQFRVAVCGDIREMYLQVL
FT                 LKQDIRLCFFWKDDENDQTPSVYTMSVLPFGVSCAPSIAQFVKNTNAERFA
FT                 EEHPAAVHAIIDQHYVDDMLVSVESEKEAVIIAKDVKRIHADAGFEMRNWI
FT                 SNCPQVLEALGEPKTAEKDLNMAEGLVTEKVLGMWWNTASDCFFFKISPRY
FT                 DPDLISGQRRPTKREVLRTLMMIFDPLGLIGNFLMYLKTVLQEIWRTSVGW
FT                 DEPIEDNQYEMWIEWLNVLPSVANVEIPRCYRTATSTGNSNNVQLHIFVDA
FT                 SEKGFAAVAYLRFQEGQIIETALVGSKTRVAPIKFLSIPRSELQACVIGVR
FT                 FANSIMKSLTINVNRRYFWTDSSDVISWLQSDHRRYSQFVAFRVSEILEAS
FT                 DIGEWQWIQTKENIADEGTKWKRPPDMTSTSRWFNGPNFLKQPEAAWPTQR
FT                 RISGTSLEELRPHLLVHTVTFEPVIDPQKFSKWTELLRRMAYVFRFIKNTR
FT                 ICKLERNVGPLTMSELNIAENYLYRLAQRNVYADEIAILVDRKASKNSKFA
FT                 ISKSSSIHHLCPFIDEEGVLRVRGRTGACLYINQDAVNPIILPKTHHITNL
FT                 VVNYYHNKYHHQNHNVTINELRQKYSIPQLKALYNRIRRVCQQCKNDNAQP
FT                 QPPAMGDLPLSRVAAFARPFTYMGVDYFGPYVIQLGRRLEKRWVLLATCLT
FT                 TRAIHLQVVHSMTTDSCIMALRNVMARRGVPAMIFSDRGTNFQGASKELEE
FT                 AIKNLDQTRFETEFTTSHTQWRFIPPASPHMGGAWERLVRIVKQNLAKLKP
FT                 NRTMSHEVLENLLTEIENVVNSRPMTNLPLDDDQSPVLTPNHFLLGSSNGL
FT                 CSWVPFNDSTEVLKNSWKLSQALANQFWKQWLRDYLPYITRRTKWFSDVDP
FT                 IRINDLVIIVDPKFPRNTWPKGRVIGIKRGQDNQVRSATVQTINGIYERPT
FT                 VKLAVLDVGVRCNAAQEDRIVGG"
XX
SQ   Sequence 6322 BP; 1879 A; 1409 C; 1520 G; 1514 T; 0 other;
     ttttacaaaa ttctgtaaga catgtcggaa aaggcatcta ctactggatc tggaaggatc        60
     tccgcaatgg aagcaataga tcgtctgtac tcatccggtg cccatggggg cgcgcccgag       120
     gagctagtga atccgctaac caatgaccct gtggtcaccg aattcggcaa cctggccatc       180
     gtgaacaacg cagcacgcga agcgaattgg tctgcaaaat cggtggcaag tgcagcggcc       240
     aacacagtca tggtaactgg accatccctc ccttctcctc aggtagcatc tggtagcaat       300
     actaagacga aaacccaaca gttgggagcg attcataagg taaaggcaag tggtatgaat       360
     acgaaaaatc ctattcagtc ggtagaaaca gtgccgtaca agaagcccgt cgcgcgcgaa       420
     aatctcaatc tacgcatacg aataactcgc tttagtcact gcgagatgtg taatgagcgt       480
     gatactagca gcatggtgca gtgcgatggc tgcgatttgt ggtatcattt ttcgtgtgta       540
     gaagtgacaa gcgggatagc cgaacgtagt tggatctgtc cggcgtgtgt tgagtccgaa       600
     gcagatgcac aactaccggg agtgtcaaag accgtcccca ataagctacc cgtaaggcaa       660
     ggggattcac ggaagactac tagcaaggca agcagtaacc gcagtcaacg tagaaccgcc       720
     ctcaggctgc aaatgttaga ggaacaaaag cagttggagc agaaatattt ggaggaaaag       780
     tatcgaattt tagatgaaga ggacgatgac gacgaaactg tgatcagcga tgacgaagta       840
     ggatcgttgg aaatgtccaa agttcaaggt tggttgatgg ataccagcaa gtgtggtgaa       900
     gatgactctg gcctagtcga agaagacgga ctcgaagtac aggagcgacg aagtggtcag       960
     catcggcagt ccacgtacgt tggtgctatt ggacaacgtt ctacgctaca aggattcaac      1020
     cctaatcaac gatcgacgcc acgcccgcaa gttctcgaag cgaatagaac tagaaacata      1080
     ggtttgcaaa actcttctga ttgcaaaaat atgttttacc aaccatcgta ccgccgatcg      1140
     ggtacagcag tccagttttg tcaaccactc gaaaatcagt ctattagaca gcatgtgcat      1200
     tctgttccag tagaagagca tacgcgattg gtaaacaatc cttcacgtcg aggaaatacg      1260
     cccgctccaa cgaatcagat gctgcctact gacggtagga accaaacgga ctcagcgtat      1320
     cgtttctaca gacaaccaga atctgatcct cgtgaggtcg aagaaaacgt ctgcatactt      1380
     aaccgtagtc agttggcagc tcgccaagcc gtgtccaaag aattaccgga gttttatgga      1440
     aacccagaag attggccgtt atttttctcc atgtacaact cctccactca gatgtgcggg      1500
     ttcaccaacg aggagaatat gctccgtcta cggaaatgcc tgaagggaaa ggccttagat      1560
     gctgtacgat gccgtctgct tcatccatcc aatgtgaatg gtgttatatc aactctaaga      1620
     atgttgtatg ggagacccga agcaataatt caagcgtcaa tccgaaaaat caggtcatta      1680
     ccatcgccac aaatcgagaa gcttgataca gtagtaaatt ttgcattaac tgttgaaaat      1740
     ttggtcgcaa cgattgaggc ttgtgggatt gaggacttcg tctacaacgc ttctttgaaa      1800
     attgagctag ttgatcgtct tccccctgga ttgaagctag attgggcaaa gcattctcgg      1860
     aacaacccag caccgaattt gctagaattc agtagttggc tatattccct tgcagaggat      1920
     gccagtgcag ttatgcatgc gtcggccatt gcatcgaaag gacgcggaat aaaacatgat      1980
     gggttcataa acgtgcattc ggataacgag gttgatcgat tacgatccag tcaaactccg      2040
     ttaatattgc catcaacatc aacaacaaat tgcattgtat gcaaaggaac atgttcgact      2100
     atagccaaat gcaaacaata tgaagagttg agcttagatg ctaagtggga cgttgtaaaa      2160
     gatgcaaaac tgtgccgcaa atgcctacgc aagcacaacg gatcgtgcag acaacaaaaa      2220
     tcttgtggag tggatggctg tacgtttctt caccatccat tattgcacaa cagatcgcag      2280
     ggaacaggaa acagatcgtc gtctgcagaa acgccgacaa gttccatggc cagttgcaat      2340
     gttcatcaaa tgcaaacaag tgaagtttta tttcggattg ttccggtctt ggtacacggc      2400
     ccgaaacagg ttgttaagac ttatgcgttt atagacgatg gatcggagtt gacgctgatg      2460
     gaggacagct tagcagaaga aattggtgtg aagggtcctc gaacgtcgct gtgtttgaag      2520
     tggactggtg gcacgaagag agtggaagca gattcgcaaa taattaacgt tggaatttcc      2580
     accatcgaag atgtcgaaaa cccttatagg atgaacaatg tccatacgat ccaaagccta      2640
     cagcttcgac cgcaaacgtt agtgttctcg gaattgctcg aacgattcca acacttcaaa      2700
     ggattacctg tcgaatccta taccaatgtt tgtcctcgaa tactgatcgg cctcgataat      2760
     gcttccctag gccacgcaca gaaaggtcga gaagggaaac catatgaacc cgttgctgtc      2820
     aaaactcgtt taggatgggt cgtatatgga tgcctttcac gtgtacaaca gaatgtgaac      2880
     tacgtaaatg tgcacgccat tgaagtatgc gagtgtaaca gtacaactga cgagcacctc      2940
     catacggcaa tgaagaacta tttcgctctg gacagcatgg ggatcgcaaa acctgcgaaa      3000
     attttgcgtt catctgaaga cgaacgagca atggagttgc ttgaaaggca gactattaaa      3060
     aaagaaggac gttatgaatc cgggttgctt tggaggtatg acgacgttcg tctgccaaat      3120
     agcatgggaa tggcgtacag aagatggcaa tgcttagaac ggcgaatgca acgtgataga      3180
     ccatttgcag aagttaccag atcgaaaatg attgactacg tggaaaaggg atatgttcga      3240
     aagttgtcgg aagctgaact aaacacacgc cagcaacgag aatggtattt accggtattc      3300
     cctgtgttaa atcccaataa accagggaaa ataagactcg tgtgggatgc agccgcctcc      3360
     gcgtacggtg tgtctcttaa ttcgctccta ttgaagggac ctgatctttt gacgtcacta      3420
     ttatctgtcc tcatccaatt tcgacaattc cgagtggcag tttgcggcga tatacgcgaa      3480
     atgtacctgc aggtactact aaaacaggat attcgattat gctttttttg gaaagatgac      3540
     gagaatgatc aaacccctag cgtctacacc atgtcggtct taccatttgg agtttcatgc      3600
     gctccaagta ttgcgcaatt cgtgaaaaac acgaacgccg aacgatttgc cgaggaacat      3660
     ccggcggcgg ttcacgctat catcgaccaa cattatgtag acgatatgct cgtaagtgtt      3720
     gaaagtgaaa aagaagcagt aatcatcgca aaggatgtaa aacggattca tgcggacgct      3780
     ggttttgaaa tgagaaattg gatctcaaat tgtccacaag ttttggaggc actaggagaa      3840
     cccaaaacgg cggagaaaga tttgaacatg gccgagggtt tagtgacaga aaaggtactc      3900
     ggaatgtggt ggaacacggc cagcgactgc ttctttttca agatttctcc tcgatacgat      3960
     ccagatctga tatccggaca gcggaggcct actaagcgag aagtattacg aacattgatg      4020
     atgatcttcg atcctctggg ccttattggc aattttctga tgtacctgaa aactgtcttg      4080
     caggaaatct ggcgtacttc agttggatgg gatgagccca ttgaagataa ccagtacgaa      4140
     atgtggatag agtggctaaa cgtgcttccc agcgttgcta atgtcgaaat accacgatgt      4200
     tatcggacag ccacctcaac tgggaattca aataacgtcc agttgcacat attcgttgat      4260
     gcgagcgaga aagggtttgc agcagtagcg tatcttagat ttcaggaagg acagattatc      4320
     gagacagcgt tggtcgggtc gaagacccgt gttgctccaa tcaagttttt gtcaatcccg      4380
     cgttccgagc tccaagcctg cgtcatcgga gtaagatttg cgaacagcat aatgaaatcg      4440
     cttactatca acgtaaacag acggtacttt tggactgatt caagcgatgt tatcagttgg      4500
     ctccaatctg atcaccgccg atacagccaa ttcgttgcgt tccgtgtgag cgaaatacta      4560
     gaagcttctg atatcggtga atggcaatgg attcaaacaa aagagaacat cgcggacgaa      4620
     ggcaccaaat ggaaacgtcc tcctgatatg accagtacca gccgttggtt taacggacca      4680
     aactttctga aacagcctga ggctgcatgg ccaacgcagc gaagaatctc tggaacgtct      4740
     ttggaagaac tacgccctca cctactcgtg cataccgtaa cgttcgaacc agtcatcgac      4800
     ccgcaaaagt tttcaaaatg gactgaattg ttacgacgaa tggcttacgt gttccgtttc      4860
     atcaagaata ccagaatatg caaacttgaa agaaatgtcg ggccgctaac aatgtcggaa      4920
     ctaaatatcg ctgaaaacta tttatatcgc cttgctcaac gaaatgtcta cgcagacgaa      4980
     atagcgattc tagtagatag aaaggcttcg aaaaactcca aatttgctat ttcaaaaagc      5040
     agttcgattc atcatctttg tccgttcatt gacgaagaag gtgtgcttcg cgtacgtggc      5100
     agaacaggag catgtttgta tatcaaccag gacgcagtca accccatcat ccttccaaag      5160
     actcaccaca tcacaaacct cgttgtaaat tattaccata acaaatatca tcatcaaaac      5220
     cacaacgtta caatcaacga actacgacaa aaatacagca tacctcaatt gaaagcgcta      5280
     tataaccgta ttcgccgagt ttgtcagcag tgcaaaaatg acaatgcgca accacaacca      5340
     cctgctatgg gagacttgcc tctatcgcgc gtagcagcct ttgcgcgccc attcacatat      5400
     atgggagtag actacttcgg tccatacgta atacaacttg gacgccgctt ggaaaagcga      5460
     tgggtgcttt tagccacttg ccttaccaca cgggccattc acctacaagt agttcactcc      5520
     atgactactg attcttgtat tatggccctc agaaacgtta tggcaaggag gggtgttccg      5580
     gcaatgatct ttagcgatcg gggtacgaac tttcaagggg ccagcaagga actagaggag      5640
     gcgataaaaa atctagatca aacgcgattt gaaacggagt tcacaacttc tcatacgcag      5700
     tggcgtttca taccacctgc ttcgccgcat atgggtgggg cctgggaacg cctcgtgcgt      5760
     atcgtgaagc aaaaccttgc caaactaaaa ccaaacagaa cgatgtccca tgaagttttg      5820
     gaaaacttgt tgacggagat cgaaaacgtg gtcaactctc gtccgatgac caatctgcct      5880
     ttggacgatg accagtcccc agttttgact cctaaccatt tcttgttggg atctagcaat      5940
     ggactatgtt cttgggttcc tttcaacgac agtacagaag tactgaagaa ttcctggaaa      6000
     ctttcgcaag ctttggccaa ccagttttgg aagcagtggc tccgagacta cttgccgtat      6060
     attacacgcc gaactaagtg gttctcagat gtggacccta ttagaatcaa cgacctggtc      6120
     atcattgtag atcctaaatt tcctcgaaat acatggccaa aaggccgcgt tattggtata      6180
     aaaagagggc aagataatca ggtgagaagc gccaccgttc agacaatcaa tggaatttat      6240
     gagcggccaa cagtaaaact cgccgtgctg gacgtaggcg ttcgatgtaa tgcagctcaa      6300
     gaggaccgca ttgtgggggg ag                                               6322
//
ID   BEL-770_AA-LTR repbase;    DNA;    INV; 821 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-770_AA-I;
KW   BEL-770_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-821
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-821
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 162-162 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 821 BP; 271 A; 157 C; 154 G; 239 T; 0 other;
     tgttggattc gctacgccaa cgcccgtcga actccgtatg ccccactgtt accggtgctg        60
     aattgccaca cccagtgcgc attgagggga ccggccacaa gccaataaat acacaccatc       120
     actacaatgc atcgaaacga caatagaggg aggaaatctc gttcgtttcg gccatgaatt       180
     gagttgcttg tgatggaaac agaaaaaaaa actactgcga ttatagtgaa ataacttttt       240
     gaattcgaat tattagaggc agaatacgta ttttgggtta tagatttgct tataatacat       300
     caggtattgc gaaatgcata taataatgaa atgttacttg taaaacatat gcctattgtt       360
     acagcctaga tagcgcattg tccttagaaa gggttaacaa ttggtcgaag ttcaaatcct       420
     atcaagtagt gccgactgaa tggtgagatc ctgaatgaat tgcctttcat tgactaattg       480
     tgcattcaca aatttgtagc ctaaatccat gaattggaaa gtataatatc tgttaagatc       540
     tgtttagtta cgtacgaaca aggctaccta gggtaagaga cctaatgtca tcctcagatt       600
     cttagcaatc ctactataat ttatccttat gcagattcgt cagcagaaat tgtaaatgtt       660
     atgcaaaaaa ttggaaatct tcgttgagtg gtagcgtaca ctacagtacg atctacatta       720
     taaaaatgca aatggattct aatactattt tatcccgcag gaattttgta attcttctga       780
     acaataaatt tacgaaatca aacaaaccct accgcccaac a                           821
//
ID   BEL-771_AA-I repbase;    DNA;    INV; 6169 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-771_;
KW   BEL-771_AA-I; BEL-771_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6169
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6169
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 241-241 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           490..5826
FT                 /product="BEL-771_AA-I_1p"
FT                 /translation="MSTERRIKGLKTRIKSLLASFNIIKSFVDEYDENTDA
FT                 FEVPVRLENLNKLWNDIQRAQSELESVDEASVDEQIKERIEFESTYYRVKG
FT                 VLLAVNKAPVAQPVHPPSSSSSHVPVPSSHVRLPDVKLPMFNGSIDAWLNF
FT                 HDLFVSLVHSSVELSNIQKFYYLRSSLAGEALKLIQSITISANNYIVAWNL
FT                 LVEHYQNPSRLKQTYLDALFEFNTLKRESATELHSLVENFEANVKVLKQLG
FT                 ERTEFWDVILIRMLSVRLDHTTRRDWEEFSSTQQAVTFKDLTSFIQRRVHV
FT                 LETIRGKAVDTPAPVYQFKKSVQRPVASHGASQMQPSRKCVMCSEHHPLYM
FT                 CQLFSKLDIEAKEKEIHRHQLCRNCLRIGHQARECPSSSSCRKCRGRHHSQ
FT                 LCTKEKSVAANLRAPESSQSSSSNHSTPRELPKTSVSATVNGPSSHASTGM
FT                 ARRSVVLATAIVNLVDENGIGHAARALLDSGSECCFITESFSQLMKAQRTK
FT                 TSIPVSGIGQSSTYARYKITATVRSRICDFSTSAEFLVLPKVTIDLPSASF
FT                 NVSSWNIPPGVQLADPCFHEANPVDIIIGAEVFFELFNVPGRIQLGESLPT
FT                 LINSVLGWVVSGKNSYNIPKSPVIANVATISEIHELIEKFWAIEEDSIAPC
FT                 YSVEEATCEEHFRRTVRRNEEGRYIVRLPVKDDIIKQLGDNRSTAVRRFRM
FT                 LESRLCRTPDLALQYSAFMDEYLALGHMKQVYDYQTPPSPCYHMPHHAVVK
FT                 NDSTTTKVRVVFDASCKSPQGPSLNDALMVGPTVQQDIRSIIMRSRSRRVM
FT                 LIADAKQMYRQVLVDERDTPLQRIVWRQSPEHPLITYELLTVTYGTASAPF
FT                 LATRVLSQLANDEQNTFPEAAEILRKDVYVDDLLSGANSIEDATKLRNQLD
FT                 ALLSKGGFQLRKWASNEEAVLEGIPADNRALQASFDLDRSQSIKSLGLHWE
FT                 PASDQLKYKIDLPTKTLSVSLTKRIALSQIARLFDPLGLLGPVVITAKIFM
FT                 QALWTLKDGNDKIYSWDEPLPASMVQRWNNYMQELPLLNNLRIDRYILTPS
FT                 PAYIQYHFFSDASQHAYGACCYIRTADTSGAFRVTLLTARSRVAPLKQQSI
FT                 PRLELCGALLASQLYERVSQALELRGPSFFWVDSTTVLSWLKATPSTWTTF
FT                 VANRVSKIQQSTQNCTWHHVAGQENPADLISRGITAESILENNLWWQGPHW
FT                 LQLPQTSWPSERLEITPNTEILSEGEKRKTTVCTASSEPTFIDLFTEQFSD
FT                 YDRMVRVTAYCSRFINNCRRISSTSLSTYVTTEEKLAAEAILIRLVQQQTF
FT                 PEEWKQLLNSQHVSPKSRLRWFYPFISNDQLIRIGGRLNQAQQPYDSKHQI
FT                 ILPASHALSKLLIRSLHKRNLHAAPQLLVTVLRLRYWITGARNLARNIVRN
FT                 CVECVKARPQLLEQFMAELPASRVTAARPFSVTGVDYWGPITLQRIHRRAA
FT                 PRKAYIAVFVCFVTRAVHLELVIDLSTAKFLQALRRFVSRRGLCSDIYSDN
FT                 GRNFIGASNELRKLIRSKEHQQAVAEECTANSIRWHFNPPKASHFGGLWEA
FT                 AIHSAQKHFFRVLGTHTLAQDDMETLLAQIECCLNSRPLIALSDDPTDFET
FT                 LTPGHFLVGSALKAIPDTDLSTIPLNRLRQWEQTQKILQLIWKRWHSEYLS
FT                 TLQPRSKWCSPPVVIKTNQLVLLKDENSPPMAWPTARIVEIHPGSDGITRV
FT                 VTVQTPSGRFTRPVSKICLLPIPPTQTISNEQTTAANESSSSNTPSSSPSS
FT                 CSQQSTTA"
XX
SQ   Sequence 6169 BP; 1638 A; 1655 C; 1293 G; 1583 T; 0 other;
     tctggtcctt cgagccggat ttggccgtcg aactccgtcc attccggtgc ttcctgcggt        60
     gagacgaacc gccattgcta agaccacatc gctacacaac ggattcgcca tcgtagacac       120
     tgccaggatc acgttactgg acggcgccat agtggaattt ataatacaag gcacagcatt       180
     gccttgtaca aggtaattag ctttccattt attgctatct cttcttgtgt gagcttcgcg       240
     gtctttgatt tccagacccg gctcgtctgc tgcgcgtgac ctccaaccaa cacaactacg       300
     cttccaacga tcacgaccgg aaattatccg gacaaatagc taccattctt ggaattcagc       360
     ttgctatcga atttgatttt acaaggcaca agtttgcctt cacgaaggta attgtatttc       420
     ctattaaagt aaacatttct cgtgtgatct gcgcggtctt acgctttgca gaccacgttc       480
     ttgttcgaaa tgtccacgga gcgtcgcatc aagggactga agaccaggat caagagcctc       540
     ctggcctcgt tcaacattat caaatccttc gttgacgagt atgatgagaa tacagacgct       600
     ttcgaagttc ctgtgcgcct tgagaacctc aataagctgt ggaatgatat tcaacgagct       660
     cagtctgagc tcgaatccgt cgacgaggcc tccgtcgacg agcaaatcaa ggagcgaatt       720
     gaatttgaat cgacctacta ccgggtgaaa ggcgttctgc tagcagttaa taaagcgcca       780
     gtcgcccagc ccgtccatcc gccttcttct tcaagctcac atgtccctgt tccgtcgtcg       840
     catgtacgcc tgcctgacgt aaagctgccc atgttcaatg gaagcatcga tgcgtggctc       900
     aacttccacg acctcttcgt ttcgctggtc cactcttccg tcgagttgtc gaatattcag       960
     aaattttatt atctccgatc atcccttgct ggcgaagccc tgaaattgat ccaatcaatt      1020
     acgataagtg ccaataatta catcgtggca tggaatttac tagtggagca ttatcaaaat      1080
     ccttctcgct tgaaacagac gtatttagac gcattatttg aattcaatac gctgaaacgg      1140
     gaatctgcga ccgaattaca ttcattagtc gaaaatttcg aggccaatgt gaaagttttg      1200
     aaacaactag gggagagaac cgagttctgg gatgtaatcc tcattcgtat gctcagtgtc      1260
     cgccttgatc atacaacacg aagggactgg gaagagtttt cgtccactca gcaagctgtg      1320
     acgttcaaag atctcacatc cttcatccag cgaagagttc acgttctgga aactatccga      1380
     ggtaaagctg tcgatactcc agcccccgtc tatcagttca agaagtctgt tcagcgtcca      1440
     gttgcaagtc atggagctag tcaaatgcaa cccagtcgga aatgcgtcat gtgctccgaa      1500
     caccacccgc tctacatgtg ccagttattc tcgaaacttg atattgaagc aaaagagaag      1560
     gagattcatc gtcatcagct ctgtcgtaat tgcctacgta taggacatca agctcgagag      1620
     tgtccttcgt ctagttcctg tcgaaaatgt cgtggtaggc atcattctca gctctgtaca      1680
     aaggagaagt ccgtcgctgc taaccttagg gcacccgaat cttcccaatc gtcatcatca      1740
     aatcactcta cgcctcgtga actgccgaag acatccgttt cagccaccgt taatggacca      1800
     tcaagtcacg ccagtaccgg aatggctcgg agaagcgtag ttttagccac agcaatcgtc      1860
     aatctcgtcg acgagaacgg aattggacac gcggcaagag ctctactaga ttccggtagc      1920
     gaatgctgtt tcattaccga atcattctct caactcatga aagcgcagcg tacgaaaacc      1980
     tccattccgg tctcaggaat cggacaatct tcgacgtatg cacgttacaa aatcaccgct      2040
     actgttcgct cacggatttg tgacttctct acttcggctg agtttttggt tcttcccaaa      2100
     gtcactatag accttccttc tgcttctttc aatgtttcat catggaacat tcctcctgga      2160
     gtacagctag cagacccgtg tttccatgag gccaatccgg tggacataat catcggtgca      2220
     gaagtatttt ttgagctatt caatgtccct ggccgcattc agctaggaga atctcttcca      2280
     acacttatca actctgtcct cggttgggtt gtttccggca agaactctta caatatcccg      2340
     aagtcgccag tcatcgccaa tgttgccact atctccgaga ttcatgagct tatcgagaaa      2400
     ttttgggcga ttgaggagga cagcatcgct ccctgctact ccgttgaaga agctacctgc      2460
     gaagaacatt ttcgtcgtac tgtaaggcgc aatgaagaag gaaggtacat cgttcgctta      2520
     cctgtaaagg atgacatcat caaacagctt ggtgacaatc gcagcaccgc cgtgcgtcgc      2580
     tttcgcatgc tggagagtcg tctttgtcgc actcctgacc tcgctctgca atattctgca      2640
     ttcatggatg agtaccttgc tttaggacac atgaagcaag tatatgacta tcaaactcct      2700
     ccatcgccat gttaccatat gcctcatcac gctgttgtca aaaatgatag taccacaacg      2760
     aaggttcgag ttgtattcga tgcgtcgtgc aagtctccgc aaggaccatc actcaacgac      2820
     gctcttatgg ttggcccaac tgtacagcag gacatacgtt cgatcattat gcgctctaga      2880
     agtcgtcgtg taatgctaat cgctgatgca aagcaaatgt atcgccaggt gcttgtagac      2940
     gaacgtgata ctcctcttca gcgaattgtt tggcgacaat ccccggaaca tccgctaatt      3000
     acgtacgagc tactaacagt aacctatgga actgccagtg caccctttct tgcaacccga      3060
     gtcctttctc agctagcaaa tgatgagcaa aatacgttcc ctgaagcagc cgaaattctt      3120
     cgcaaagatg tctacgttga cgaccttctg tcaggcgcga acagcatcga agatgcgact      3180
     aagctcagaa atcaactaga tgcactcctc tcaaaaggtg gattccaact tcgcaagtgg      3240
     gcatcaaacg aagaagctgt tcttgaagga attccagctg acaatagagc acttcaagca      3300
     tcattcgacc ttgatcgcag tcaaagcata aaatcactcg gtttacactg ggagcccgct      3360
     tcagatcagc ttaaatataa gatcgatctt cccaccaaga ccctttctgt ctctcttact      3420
     aagagaatcg cattatcaca aatcgcgcgt ctcttcgacc cacttggtct gttgggtcca      3480
     gttgtcatca ctgcaaaaat tttcatgcag gccctctgga cactgaagga tggaaatgac      3540
     aaaatctata gttgggacga accacttcca gcctcaatgg ttcagcgttg gaacaattac      3600
     atgcaggagc tacctcttct caacaatttg cgcattgatc gatacattct cactccgagt      3660
     cctgcatata tccagtatca cttcttttct gatgcttcgc aacacgctta tggagcatgc      3720
     tgttatattc gaacagcaga tacatctgga gctttcaggg tcactctact gactgccagg      3780
     tccagagtcg ctcccctcaa acagcagagc attccacgtc tcgaactgtg cggcgcactt      3840
     cttgcatcac aattgtatga aagggtatcg caggctttag aactacgcgg tccgagcttc      3900
     ttttgggtcg attccacaac ggtacttagc tggctgaaag ctactccctc tacatggacg      3960
     acgttcgttg cgaaccgcgt gtcaaaaatt cagcaatcaa cacaaaattg cacctggcac      4020
     catgttgccg gacaagaaaa tcctgcagac cttatatccc gtgggatcac tgcagaaagt      4080
     atcctcgaaa acaatctctg gtggcaagga cctcattggc ttcaactacc acaaacatca      4140
     tggccatcag aacgcctaga aatcactccc aacaccgaaa ttctttcaga aggggaaaag      4200
     cgaaaaacaa cagtctgtac agcatcatca gaaccgactt tcatcgacct cttcacggaa      4260
     caattctccg actatgatcg catggttaga gtcaccgcct actgttctcg attcataaac      4320
     aattgccgaa gaatctcatc aactagttta tcaacttacg tcacaacgga agaaaaactt      4380
     gcagcagaag caatattgat tcgcctggta cagcagcaga ctttccctga agagtggaag      4440
     caactcctaa attcacagca tgtttcgcca aaatctcgac tgcgttggtt ctatccattc      4500
     atttccaacg atcaactaat tcgcatcgga ggtcgcctca atcaagcaca gcagccatac      4560
     gatagcaaac atcagattat tcttcccgct tctcatgccc tctccaagct actgatacgc      4620
     tcactacaca aaaggaatct ccacgcagct ccgcaactcc tggtcactgt tttgcgctta      4680
     cggtactgga tcacaggggc cagaaacctg gccagaaaca tcgttcgcaa ctgcgtcgaa      4740
     tgcgtcaagg cgcgacctca actactagag caatttatgg cagaacttcc ggcttcccgt      4800
     gtcacagcag cccggccttt ctccgtaact ggcgttgatt attggggacc aattactctg      4860
     cagcgcatcc atcgtcgagc agcaccacgc aaggcttata tagccgtttt tgtttgcttt      4920
     gtcacacgcg ctgtccacct cgaattggtt atcgatttga gtactgctaa atttcttcaa      4980
     gccttacgtc gcttcgtttc acgtagaggt ctgtgtagcg atatctacag cgacaacggt      5040
     cgcaacttta tcggagcatc caacgaactg cgaaaattga ttcgcagtaa ggaacatcaa      5100
     caagccgtcg ctgaagaatg caccgccaac agcattcgat ggcacttcaa tccaccaaaa      5160
     gcatcccact tcggtggact ttgggaagcc gcgattcatt cagcacagaa gcatttcttt      5220
     cgggttcttg gcacacacac gctagcgcag gacgacatgg agacattgct ggcacaaatc      5280
     gagtgctgtc taaactctcg accgttaatt gcactcagcg acgatccgac cgacttcgaa      5340
     acgttgacac cgggacactt tcttgttggg tctgcattaa aggccattcc agacacggac      5400
     ctctcgacca ttccattgaa cagattgcgg caatgggaac aaacacagaa gattcttcaa      5460
     ctaatctgga agcggtggca ctctgaatac ttgtcgactc ttcagcctcg ctctaaatgg      5520
     tgcagcccgc cagtcgtaat caaaaccaat caattggttc tcctcaagga tgaaaattct      5580
     cctccaatgg cttggccgac tgccagaatc gttgaaattc atccgggatc cgacggtatc      5640
     acacgtgtag taactgttca aacccctagc ggtcgcttta cacgtccagt gtccaaaatc      5700
     tgcctgttgc cgattcctcc cacgcaaaca atatccaatg agcagaccac agcagcaaac      5760
     gagtcgtcat catcaaacac accatcgagt tcaccgtcgt cgtgttcgca acaatcaaca      5820
     acagcgtaga aatgagaatc caatatcgtc gtgcacattt ttcaccgttc agcaactgga      5880
     ttcggagaat cttcatcatc cttctaatgg ttcctgctct gcaacacctg aaattaaatg      5940
     caaggccctt tgaattaagg gacaaggtaa gaacctgtcc atatttatat attttttaga      6000
     aaccctctac cgggtcttct cttccatgtt tacatctgca cccgctgatg attcgcatcg      6060
     tcatcgtcga gatcaaccga gatagagccg actagtgaca gctgtcgccg ccgtcatcga      6120
     ttcatcgtca accgatctgt cagaaatacg atttccgaag gggccagta                  6169
//
ID   BEL-771_AA-LTR repbase;    DNA;    INV; 533 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-771_AA-I;
KW   BEL-771_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-533
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-533
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 89-89 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 533 BP; 160 A; 117 C; 109 G; 147 T; 0 other;
     tgttcgcacc cgcgaaagtg tatttgtgcg ccacctatat gtggaaacac atcgaccgac        60
     agcatcaacc attggtagta tcgatcatgg cggcctgtag aaatatgcgt ttttcatcga       120
     tctcgctcta tccggtcaac catgacagaa tggactaacc cactataaaa gaccgacggg       180
     acttcatgtt cgctctcttt tggctttgcg acaactcgac gtcatcgacc accatcatca       240
     tcaacgaaag tgagacatca acaaaccagt gatagaatta ccacccactg taggtgatta       300
     gtttgtatag gaagtgaatt cgaataaagt aatttaagct acattaatta aataaagtga       360
     agtggactga tgaacttacc tgtgccgtgt tacatactct gttgtgcctg aaaagaaata       420
     ggacattaaa aaagaacttt atacttacct gtggtatgaa ttccgtcccc gttgtgcgaa       480
     gtggtgaata gtgttttagc acagaatcgc ttttctcctg agctcatcga aca              533
//
ID   BEL-772_AA-I repbase;    DNA;    INV; 5962 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-772_;
KW   BEL-772_AA-I; BEL-772_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5962
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5962
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 242-242 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..5934
FT                 /product="BEL-772_AA-I_1p"
FT                 /translation="MFATPPPKKEKIPRTPISEQKEEQKRKEENKKMEEQL
FT                 KVLVHQRGAVKGKLTRVCSALRHSDEEPNPNILNVHFLQLHQKTVEHCYRE
FT                 YNDFQNKIYALPLSDERRAEQWEKYVDFESLHNDLVIRLSALMEKANKAAA
FT                 AEVVPLSGIEPGASQQKLSHHLMYPAQPYLPPLQVPLPTFDGSYEKWYSFK
FT                 SMFTTVMNRHQQEEPALKLYHLRNCLVGQAAGIIDQDLVNNNDYDAAWLVL
FT                 EQRYEDKRIIIDKHIENLFNLPKVGQENVVNMRKMIDVCTKNVDALRNQEL
FT                 PVAGLGEQMLVNLIAAKMDKKLRVAWEARQKKGVLPTYTATLDFLQEQCRI
FT                 YEKIDTKPTTESAKTKVTKSHTLVSTREAKNEQKCSVCKATHELWKCESFK
FT                 NKSVSEKYDVLKRCGACFNCLMKGHRTNACASNHSCRECGKKHHTLLHVDD
FT                 SSKKTSSARPTEAPTPEVKPSPTPIDSSPSSGTSTTLCTSVESQKKQTLLS
FT                 TAVVFVYGKCDTPYPCRVLLDSASQMNFVTERFANLLSLRLEPADYTVSGL
FT                 NGNNTRIRRLLHTTVKSCHGEYAVDLDLLVTPRITGDLPVKSFDISEWPIR
FT                 NKEVLADPAFNKRGRVDMLIGAEYFWELLESDRIELGPNLPTLTNTKLGWI
FT                 AGGVIASDEPVVAHTFCQTAEDEPLIELLKSFYNVEACDEIRLPPKADDER
FT                 CLEHFRRTHRRTEEGRYVVQHPFNERRHELGDSRSMALRRYLNLERKLDMQ
FT                 PELKEQYSQFIREYELLGHMRVVQEDPSEKHNSVFYLPHHCVLRPTSTTTK
FT                 LRVVFDGSAKSSSGVSINDVLMTGPTIQNDLIAILLRFRGFQYVFTLDIPK
FT                 MFRQVDVRSEDTKYQRIFWRYNREEPLTIRELTTVTYGLAPSPFQATMALK
FT                 QTAEDHEDEFPEAAKVVEKGTYMDDILSGADTIDAACQLQREVTGLLAKGC
FT                 FDAHKWCANHPDILEDVPDALRGNSFEVTDDNSKLIVKTLGVTWNPAEDWF
FT                 SVSVSDERIDDVTRRKLLSQLAKLFDPLGFFGPVLTTAKLILREVGELQIG
FT                 WDEPVPDEVESKWRNLRKEMTLLNQIQLPRWISWKGPLQLELHGFSDASDL
FT                 AYGACLYARALFPDGSVKMRLICSKSRILPKKKAKEKAITTPRAELLAALL
FT                 LARLIVKFSDATELEFASTNLWSDSRIVLAWIGKPSQMLNIYVANRVSEIQ
FT                 GLVPDCFWRYIPTNENPADLISRGEQPKKLVASSLWWNGPPLLNRAVVEAT
FT                 EEAEIPDEELPEMRAGVVLAVTVPVRRMMIFDRVSNFSKIVRYMAYFARFA
FT                 RYIKSSKREVMKGPLTSEESIQAILLVVRLVQHEAFQPEIRALQDGADTKH
FT                 RLNGLKAFLDKEDGILRVGGRIKRAFIPYDSRHQMILPAKHPITEALVRYL
FT                 HLDNLHIGQKGLLAIVRQRYWPLNVKATIRKVIRNCIVCFKANPLKTTQMM
FT                 GDLPSYRIRPAPVFTNTGVDYAGPFWVKSSSAARKPLITKAYVCLFVCMQT
FT                 RAIHLELVSDLTTDAFLAALRRFTSRRGYPKTMRSDNATNFVGAKTELHEL
FT                 WQLFQNQCSTKKIISFCTEKGMEWSFIPPRSPHFGGIWEAGVKQVKHHLTR
FT                 IVGDRKLTYEELYTTLTQIEAVLNSRPLAPCSDDPSDYAAITPAHFLIGRE
FT                 MQAVAEPSYLDLKYNSLSRWQLVQSMVQHFWKRWTAECLPELQNRQKWLKT
FT                 KKIVNNSLVLLMDKNQPPMQWALGRITATHPGEDGVIRVVTIRVPNGGEFK
FT                 RAVTEICFLPLDEDNA"
XX
SQ   Sequence 5962 BP; 1621 A; 1391 C; 1573 G; 1377 T; 0 other;
     ttgtggtcct tcaacgaccg gatgtgcgaa aaaccggtgg attacggttg ttgtgccgcg        60
     tttttcccgt gaaaatccga tacgaacact ccgccatcgc gttcggccga gtgtagcgac       120
     gtgctttttt gcaaatggcg gtcgcttcga acattgaaat tcgattcgag cattcgtccg       180
     ctgttgtcgg tcgtgtgtag tgacgcgttg gctgctgtcc cgactaaggc ctctagtcgg       240
     ggtggcacgt ggcggtcact tctgaagagg aaagtagacg attgtgattt gtgagcatcc       300
     gatagtggat gtaccgctag gcggtcgcgt gaaaaaaaag tgaattagtg aattgagcat       360
     tcgaccactg ctggccgagt gtagcgacgc tagctgcagt tgcactaagc gatcgcttcg       420
     agtaaaccgt gagcatcctt tggatgtgac gctcagccgt ctcgaaagaa caaaaatttc       480
     gaagaagaaa gtgcttttcc aacaagtatc ggtggaattt gttctcacaa atggcggtcg       540
     ttcaatgtga tgtgattcgc gactgtgaag aagatgtttg ccacaccacc gcctaagaag       600
     gagaagattc caagaacacc gataagtgaa caaaaagaag aacaaaagcg taaagaagaa       660
     aataagaaga tggaagagca gttgaaagtg ctggttcatc agagaggggc agtaaaaggg       720
     aagttgacgc gtgtgtgtag tgctttgcgg catagtgatg aagaaccgaa tccgaacatt       780
     ttgaacgttc acttcctgca actccaccaa aagacagtgg agcattgcta tcgcgagtac       840
     aacgactttc agaacaagat ttacgcgcta cccctctctg atgagcgtcg tgccgagcaa       900
     tgggaaaaat atgtggattt tgaatcgctt cataatgact tggtcatccg actgagtgca       960
     ctgatggaga aggcaaataa agcggcagcc gctgaggtgg ttcctctatc cgggatcgaa      1020
     ccgggagcgt cacaacagaa actttctcat catttgatgt acccagccca gccgtatctg      1080
     cccccgttgc aagttccgct gccgaccttc gacgggtcgt atgaaaagtg gtattccttc      1140
     aagtcgatgt ttaccaccgt gatgaatcgg catcagcagg aagagccggc gcttaaactt      1200
     tatcatcttc gaaattgcct ggtcggacaa gcagccggta tcatcgacca ggatctggtc      1260
     aataataacg actacgatgc cgcttggttg gtgcttgaac agcggtatga ggataaaaga      1320
     atcatcatcg acaagcacat cgagaatctg tttaacttgc cgaaagttgg acaggaaaat      1380
     gttgtgaaca tgaggaagat gatcgacgtt tgcacgaaga acgttgacgc cctgaggaat      1440
     caagagttac ctgtggctgg gcttggggaa cagatgctgg tgaacctcat tgctgcgaag      1500
     atggacaaaa agctgcgggt agcgtgggaa gcccgccaga agaagggagt tttgcccaca      1560
     tatacggcaa cgctggattt cctacaagaa caatgtcgaa tctatgagaa gatcgacacg      1620
     aagccgacga cggagagtgc caaaacaaag gtgacgaaaa gtcacacact agtgtcaacc      1680
     cgtgaagcaa aaaacgaaca aaagtgttca gtgtgtaaag caactcacga actctggaaa      1740
     tgtgagtctt ttaagaacaa aagtgtgagt gaaaaatatg atgttttgaa gcgatgcggt      1800
     gcctgtttca attgtttgat gaaaggccac cgcaccaacg cgtgtgcctc gaaccattct      1860
     tgtcgagagt gcggcaagaa acatcatacg ctgctgcatg tcgacgactc ttccaagaag      1920
     acttcttcag caaggccaac ggaagcaccc acaccagaag tgaaaccaag tccgactccg      1980
     attgacagta gcccatcatc aggaacttcc acaactctgt gtacaagtgt ggaaagccaa      2040
     aagaagcaaa ctttgctttc gactgctgtg gtattcgttt acggtaagtg cgacacaccc      2100
     tacccatgcc gggtgctact ggactccgcc tcgcaaatga atttcgtaac ggagaggttt      2160
     gcgaatctac tttccttgag attggagcct gctgattata cggttagtgg attgaacggc      2220
     aacaatacac gaattcgtcg tttactgcac accaccgtga agtcctgcca tggagaatat      2280
     gctgttgatc ttgacttgct ggtgactccc cgaatcactg gtgacttgcc ggtgaaatcc      2340
     ttcgacattt cggaatggcc tatccgcaac aaggaagtgt tggctgatcc ggccttcaac      2400
     aaacgaggac gcgtcgatat gctgatcggc gccgaatact tctgggaatt gctggagagt      2460
     gaccgcatcg agctcggccc gaatctgcca actctaacga acaccaagct tgggtggatc      2520
     gctggaggag taatcgcaag cgacgagcca gtcgttgcgc acactttctg tcagactgct      2580
     gaggatgagc cgcttatcga gctacttaag agcttttaca acgtggaagc ttgtgacgag      2640
     attcgcctgc ctccgaaggc ggatgacgag cgatgtttgg agcatttcag gcgcactcac      2700
     cgacgaactg aagagggaag atacgttgtg caacacccct tcaacgaacg aagacatgag      2760
     ttgggcgatt cgcgtagtat ggcgctgcgg cgctatctga acctggagcg aaaattggat      2820
     atgcagccgg aattgaaaga gcaatactcg cagttcattc gagaatacga gctgctcggg      2880
     catatgcgtg tggtacagga ggacccgtca gagaaacata attcggtgtt ttatctgccc      2940
     caccactgcg tattgagacc aacaagcacg acgaccaaat taagggtcgt atttgacggt      3000
     tctgctaaat cgtcctctgg cgtttccatc aacgacgttc tgatgactgg gccgaccatc      3060
     cagaacgacc tcatagctat cctgcttcga ttccggggat tccagtatgt attcacactg      3120
     gacattccca aaatgtttcg ccaggtcgac gtgcgctcag aagacacaaa atatcagcgt      3180
     attttctggc gctacaatcg agaggaacct ttgaccattc gagagctcac aacagtcacg      3240
     tatgggctgg cgccatcacc gtttcaagcc accatggcgc tcaagcagac cgctgaggat      3300
     catgaggatg aatttcctga agctgctaag gtcgtcgaga aaggcacgta tatggatgac      3360
     atcctgtcgg gcgccgacac tattgatgcg gcgtgtcaac tgcaacgaga agtaacaggt      3420
     ctattagcaa agggttgctt cgatgctcat aaatggtgcg caaatcatcc tgacatactc      3480
     gaagatgttc ctgatgctct gcggggcaat tcgttcgagg ttacagatga caactcgaaa      3540
     ttgatcgtta agacgttagg cgtaacgtgg aatccagccg aggattggtt ttcggtgtca      3600
     gtctccgacg aacgcatcga cgacgtgacg agaaggaagc ttttgagtca gctcgcaaaa      3660
     ttattcgatc cactgggctt ctttggtcca gtgcttacta ctgcgaaact gattttgcgg      3720
     gaggttggtg aactgcagat tggctgggac gaaccagtac ccgatgaagt tgaatccaaa      3780
     tggcgaaact tgcgcaagga aatgacactt ctgaaccaga tacaactgcc caggtggatc      3840
     tcgtggaaag gtccgctcca actggaacta catggattct cggatgcctc cgacttggcc      3900
     tacggggcat gcctttacgc tcgtgctcta tttccggatg gctccgtcaa aatgagacta      3960
     atctgcagca agtcgcgcat tctaccaaaa aagaaggcga aggaaaaggc tattacgact      4020
     ccacgtgctg aacttttggc ggctttgcta ctcgctcgac tgatcgtgaa gttttcagac      4080
     gctacagagc tggaatttgc atcaacaaat ctctggagcg actcaagaat tgttttggca      4140
     tggattggga agccgtcgca aatgctaaac atctatgtgg cgaatcgggt gagtgagatc      4200
     caagggctcg tccctgattg cttttggcgc tacataccta caaatgagaa ccccgccgat      4260
     ctgatatccc ggggagagca accgaagaag cttgtcgcat ctagtctgtg gtggaatgga      4320
     ccgcctctcc tcaatcgcgc tgtcgtcgag gcaacggaag aagcagaaat tcctgatgaa      4380
     gagcttcctg aaatgcgagc tggcgtcgtg ctggcagtga cggttcccgt tcggcgaatg      4440
     atgatttttg acagggtgag taacttttca aaaatcgtgc gctacatggc ctacttcgct      4500
     cgctttgcga ggtacatcaa atcgagcaaa agggaagtga tgaagggccc actcactagc      4560
     gaagaatcaa tacaagcgat cctgttagta gtacggttgg tccaacatga agcattccag      4620
     cccgaaatac gtgctctgca agacggtgct gacacgaagc accgactcaa cggattgaaa      4680
     gcgttcctgg ataaagaaga cggcattcta cgggtaggcg gtaggattaa gcgagcattt      4740
     attccttacg acagccgcca ccaaatgata cttcctgcaa agcatccgat taccgaagcg      4800
     cttgtcagat acttgcattt ggataatttg catatcggac agaaaggact gcttgcgatt      4860
     gtccgacagc gatactggcc actaaacgtt aaggctacaa ttcgcaaggt aattcgaaat      4920
     tgcatagtct gcttcaaagc aaaccctctg aaaacaacgc aaatgatggg cgatctaccg      4980
     tcctatcgga ttcgaccagc tccggtcttc acaaacaccg gcgttgacta cgctggacca      5040
     ttttgggtca agtcatcctc tgctgcgcgt aaacctctca tcacaaaggc ttacgtgtgc      5100
     ctgtttgtgt gtatgcaaac tcgtgctata cacctggaat tggtctctga cctgacgacg      5160
     gatgcgttcc tcgcagcctt gagacgcttc acaagccgac gaggatatcc gaaaacgatg      5220
     cgttccgaca acgcgaccaa ctttgtcggg gctaagacag agttgcacga gttgtggcag      5280
     cttttccaga accagtgttc caccaaaaag atcataagct tctgcaccga gaagggaatg      5340
     gaatggtctt tcattccgcc aaggagccct cactttggcg gaatatggga ggccggggtg      5400
     aagcaggtca aacatcactt gacacgaatc gtcggtgacc ggaagctaac ctacgaagag      5460
     ctgtacacaa cgctaacgca aatcgaggca gtactcaatt ctcggcccct ggcgccgtgt      5520
     tcagacgatc cgagtgacta cgcggcgata acaccggcac actttttgat tgggcgagaa      5580
     atgcaagcgg tagctgaacc gtcctatctc gatctaaaat acaactccct ttcgagatgg      5640
     caactagtgc agagcatggt acagcatttt tggaagagat ggacagcgga gtgtctgccg      5700
     gaactccaaa atcgtcagaa gtggctgaaa acaaagaaaa tcgttaataa cagtttggta      5760
     ctattgatgg acaagaatca gccacccatg cagtgggcgc taggaagaat tactgcgacg      5820
     catcctggtg aggacggcgt gattcgcgtc gttacaataa gagttcctaa tggaggagag      5880
     tttaagaggg cagtaactga aatatgtttt ttgccattgg atgaagataa cgcttgaaat      5940
     atgtatttca acccggggag gg                                               5962
//
ID   BEL-772_AA-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-772_AA-I;
KW   BEL-772_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-215
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-215
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 90-90 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 215 BP; 69 A; 56 C; 36 G; 54 T; 0 other;
     tgttcgatta cctgagcatc ccaacagagt gaacattcct agagcacctt ctgtgccgaa        60
     ccacactcta cacattattt tgtaagtctc ccaattaacc tgaataaaca agttctgtac       120
     aatcattcga gtcaatcggt cgcgtttgat tttactcccg aaaccgaaac ccgaaaaacg       180
     cagaaaatta cagtccgctt agatcggaag gaaca                                  215
//
ID   BEL-773_AA-I repbase;    DNA;    INV; 6568 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-773_;
KW   BEL-773_AA-I; BEL-773_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6568
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6568
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 243-243 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           771..6137
FT                 /product="BEL-773_AA-I_1p"
FT                 /translation="MAPDLRALTKQERFCFDTLNNVAKFIDGYDEARDRGR
FT                 IAGWMDRLEGIFENFLKIRLEIDLLQDEDSPTAEEEDKISRASRDQFEKIY
FT                 VHVKGFLVNAERNAKAIPSTSAGEGFSGSIPNRTNQMARIKLPEVKLPSFD
FT                 GSVTEWLTFRDTFKSLIDSNPNLSDVDKFSYLVASLTKEAKRVVESIDITD
FT                 ANYAVAWQSLTKRFDNKKLVVKTYLDSLLSVEPLKRECYESLSRLIDDFER
FT                 NLQMIEKMNIDTKGWSVLLAHIVCSRLDTATLKQWENHHKSTDVPKYEQLI
FT                 DFLRSHCMVLQSIAPGKPRASDPPRSDPTRVQKFKVSSVHSIVSSSSKPCC
FT                 LCSQSAHSPFKCDAFRKLSVSERYDLVKKKSLCINCLSADHQVRNCSSGAC
FT                 RVCSQKHHTMLHQQAPNRNPPQPQVSKPNPSQPTTNQTQSQIAPTISSNAN
FT                 QTSSQSTLAADPTPSTSSLSHCSTSLVANVRRIPSTVLLQTALVKVIDSAK
FT                 NIIWARALLDPASQLNIISESLAQRLQVQKVKENHSVGGIGQSSTTSTHFI
FT                 VVHIQSHCCSYRTPLKFHVLKAVTRELPSNNIDVADWNWPTDVILADPKFH
FT                 QPAPVDMIIGVDAYYDLLLDGLIRLGPGRPVLQNTLLGWVVSGRVGNSRPD
FT                 PESVSVVHVCSTLSLDEQLSRFWELESCQSSSTMSVEESTCEAHFVATTTR
FT                 TDSGRFVVELPKKLSVLSLMGDSYEIAKRRFLSVERRLQAKPQLKAAYSAF
FT                 IEEYQSLGHMKEVIDVSQPTPYRPYYLPHHCIERPDSVTTKLRVVFDASCV
FT                 TDTSISLNNALMVGPVVQGDLFSLILRWRTHRYVIIADIEKMYRQIQIHPS
FT                 DQCLQRILWREDPSEPIRIFELSTVTYGTSSAPYLATRCLQELSKLGRPSY
FT                 PLAAEVVGEDFYMDDLMTGSNDIESGKQLCTQLQQLLDSAGFPLRKWSSNS
FT                 PEMLSHIPETLRNERTVLGLDPGASIKTLGLKWEPASDSFGFHVPKWKQDI
FT                 CVSKRQVVSDSSSLFDPLGFIGPVIVVAKMFVQELWRSKRSWDEPLEDELQ
FT                 QNWLQFRCELAVIETINVPRWVVPIIDPTVIELHGFCDASEKAYGTCIYIR
FT                 AVSPSGEISVRLLTSKSKLAPLGNSKKQKKICLPRLELSSALLLSHLFQKV
FT                 QEALKLQMKCFFWTDSMIVLQWISSTPSRWKTFVANRVSEIQHLTECGLWA
FT                 HVPGVENPADIISRGMLPAELKDCAAWWNGPPWLSQPNRFWPPLVRPTLED
FT                 FAVDELEEKVVALPIQAQTPNPIFSLRSSYTGLVSLTAYILRFSHNCKQRS
FT                 PSNRRTGFLLAAEYKEALSVLVRVSQQESLKEDIQAIAANGEVKPNSKLKT
FT                 LAPILEDGILKVGGRLRNAPVSETRKHPMILSSHHPFTKMVVVYYHQKLLH
FT                 AGPQLMIANLRERFWPLRVRNLARKVVQDCIRCYRCKPTVQEQLMGDLPTE
FT                 RVTPTYPFLKTGVDLCGPLFYRHYGRKSPPVKCYVAIFVCLVTKAVHIELV
FT                 ADLTTDAFISALKRFIARRSKPAVIECDNAKNFQGASRALAELLTQFKSQQ
FT                 HQHSVSSFCVAEGIDFKFIPPRSPNFGGLWEAAVKSFKKHLKATIGTTVLF
FT                 KDDLETLLVQIESCLNSRPLTQLSTDPEDLEVLTPGHFLVHRPLVATAEPS
FT                 YEQVPQNRLSRYQSTQEFVRRIWKRWSTDYLSGLHPRTKWTRQRDNIAVGT
FT                 LVLLKDEKLPPLRWCLGRVTRLYHGDDGNVRVVSVRTKDGEFNRAISKVCV
FT                 LPVQQSATAEDDEVLANM"
XX
SQ   Sequence 6568 BP; 1675 A; 1693 C; 1549 G; 1651 T; 0 other;
     tattaaaagt ggtccttcga accggatcga ttggcctcgg tatattcgta gttttcggtt        60
     cgcgtcagtg ctaagtgctt gtcgtgaaaa aagcagaccg tgagttcacg gattcggtgt       120
     cacggtagaa gaagtttcgc gtcggtcttt ctgtaacgtt atcggtggtg atcgtacggt       180
     gccgttcgtg cgcgccgtga acgctaagcg agcaaagtga tcgtgattag tgtcgaatac       240
     gaacgttctt tatacaaacg gaacgccaaa agaacgataa tcgtgcaaaa gtgataaccg       300
     cttcgatcgg aaaacagaat agtgaaagtg caccagcaac caagtgagtg tgacgccaac       360
     acgtggtttg agtcgaccgc gtgctcaaca gatagcgtgg cttgggtccg cacaatagga       420
     tcgcagataa tagccgtagc aacaaaggcc gatccccgcc ggccggtcgc cgcacctccc       480
     gccgattgaa gaggtaagcg agtagaagca tgcgactaac ccttttcgca aattgagtac       540
     catcgtatcg gacagagcag aaagatttag agcatttttt cgagatttga gtgcagtggt       600
     tgatgatttg cgaaccatat taacacgagg tggtggttaa atatttctcg tgagcaaata       660
     aaagctgttg gtggtttgag aactacatat tccgacaact atctgcgaca cagattgcga       720
     tatttctgca caattttgag cgctttcttt tgttcttttg aagtggaaca atggctcctg       780
     acttgcgagc attgacaaag caagaacgtt tttgcttcga tacgttgaac aacgtggcta       840
     aatttattga tggctatgat gaagcgcggg ataggggtcg gatcgcgggt tggatggatc       900
     gtttggaggg aattttcgaa aactttttga agattcgtct tgaaatagac ttgctgcagg       960
     atgaagattc acctacggcg gaagaggaag ataagatcag tcgagcctca cgtgatcaat      1020
     tcgaaaagat ctacgtgcat gtgaagggtt tcctcgtcaa tgcggaacga aatgcgaaag      1080
     cgataccatc caccagtgcg ggcgaaggtt tcagtggttc gattcccaat cgcacgaacc      1140
     aaatggctcg gattaagctt cctgaagtca agcttccgtc tttcgatggc tcagtcacgg      1200
     agtggctgac ctttagagac acgttcaaga gtctcattga ttctaatccg aatctttctg      1260
     acgtggacaa attttcctat cttgtcgcat cactgacaaa ggaagctaag cgggtggtcg      1320
     aatctatcga catcacagat gccaactatg ctgtcgcttg gcagtctttg acaaagcgtt      1380
     tcgataacaa aaagttagtg gtgaaaacat acttagattc gcttctttcc gtggaacctt      1440
     tgaagcggga atgttatgaa tccctctctc gtcttatcga cgacttcgaa cgtaacctcc      1500
     agatgattga gaagatgaat atcgacacca agggttggag tgtcttactt gctcacatcg      1560
     tgtgttctcg actcgacaca gcaacgctga aacaatggga gaatcatcac aaatcgacag      1620
     acgttcccaa atatgagcag ctgattgatt ttcttcgttc ccattgcatg gtgcttcagt      1680
     caatcgcgcc tgggaaaccg cgcgcctctg atcctccccg atctgatcca actagagtgc      1740
     aaaagttcaa ggtcagcagc gtgcactcca tagtcagttc ttcctcgaaa ccttgctgtt      1800
     tatgtagtca gtctgcccac tctccgttca aatgcgatgc gttccgcaag ctttccgtgt      1860
     ctgaacgata cgatttggtg aagaaaaagt ctctctgcat aaattgcctg tccgctgatc      1920
     atcaagtgcg aaactgttca tctggtgcct gccgtgtctg tagtcaaaag catcacacga      1980
     tgctccacca acaagctccc aatcgcaatc ctccccaacc acaggtttcc aaaccgaatc      2040
     caagccaacc caccacaaat cagactcaat ctcagatcgc tccaactata tcctcaaacg      2100
     caaatcagac ttcctcgcaa tcaaccctcg ctgccgatcc tacgccttcc acaagttcac      2160
     tcagccattg ctctacctcc ttggttgcca acgtccgccg aatcccatca accgtgttgc      2220
     tgcagacggc gctcgtgaag gtcatcgatt ctgcgaagaa catcatctgg gctagagctt      2280
     tgcttgatcc tgcatcgcag ctgaacatca tctccgaaag tttggctcaa cgattgcagg      2340
     tgcagaaggt caaggaaaat cacagcgtcg gtggtattgg acaatcctct accacttcca      2400
     cccatttcat cgtggtccac atccagtctc attgttgcag ttaccgtact ccattgaagt      2460
     ttcacgtgtt aaaggctgtc acacgggaac ttccttcgaa caacattgac gttgctgatt      2520
     ggaattggcc tacggacgtt atactggctg atcccaaatt ccaccaaccc gcacctgtag      2580
     acatgattat tggagtggat gcttactatg atttgcttct cgatggtctc atccgtcttg      2640
     gccccggcag accggtgctg caaaatacct tgctcggttg ggttgtttcc ggtagggtcg      2700
     gaaatagtcg accagatcca gaaagtgtta gcgtcgtcca cgtttgcagt acgctgagtc      2760
     tcgatgaaca gctgtccaga ttttgggaac tggaatcttg tcagtcctcc agcaccatgt      2820
     cggtagaaga atcgacttgc gaggctcact tcgtagctac caccacgaga actgactccg      2880
     gtcggttcgt agtcgaactt ccaaagaaat tgtccgtcct atcgctgatg ggagattcgt      2940
     atgaaattgc aaaacgccgc ttcctctccg ttgaacgccg tttgcaagca aaaccccaac      3000
     tgaaggctgc ttactccgct ttcatcgagg agtaccaatc gttggggcat atgaaggaag      3060
     taatagatgt cagtcaaccc acaccatatc gcccatatta tctgccacac cattgcatag      3120
     agcgtcccga tagcgtcacc accaaacttc gcgtggtttt cgacgcgtcc tgcgtcacgg      3180
     acaccagcat ttctttgaac aacgccctaa tggtgggtcc agtggtgcaa ggcgacctat      3240
     tctcgctgat tctgcgatgg cgaactcatc ggtacgttat tattgcggac attgaaaaaa      3300
     tgtatcgcca gatccagata catccctcgg atcaatgtct tcaacgaatt ctttggagag      3360
     aagatccgtc agagccaatc cgcatttttg agctctcgac ggtgacttat ggcacctcct      3420
     cggcgccata cctagccacc cgatgtctgc aagaactgtc caaactgggt cgcccttcct      3480
     acccccttgc tgcggaagtc gttggagaag acttctatat ggacgatctt atgactggaa      3540
     gcaacgacat cgaatctggc aagcagttat gtacacaact tcagcagctg ctggactctg      3600
     ctgggtttcc gctacgcaaa tggtcgtcca actccccgga gatgctttcc catattcccg      3660
     aaacactgcg aaatgaacgg accgttttgg gactcgatcc cggtgcttct atcaaaacgc      3720
     ttggtttgaa atgggaacca gcatccgata gttttggttt ccacgttcca aaatggaaac      3780
     aggacatctg tgtatccaag cggcaggttg tttcggattc ctcaagcctt tttgatcctc      3840
     taggcttcat aggaccggtg atagtagttg ccaaaatgtt cgtacaggaa ctctggcgaa      3900
     gcaaacgttc ctgggacgag cctcttgaag acgaactcca acaaaactgg ctgcagtttc      3960
     gatgcgaact tgcagttatc gagacgatca acgttcctcg ttgggttgtt ccaatcatcg      4020
     atccgactgt catcgaatta cacggttttt gtgatgcctc cgagaaggca tatgggacct      4080
     gcatctacat ccgtgccgtg tcccccagcg gagaaatatc cgttcgctta ttaacctcta      4140
     aatcgaagct agcacctctc ggaaacagca aaaagcaaaa aaagatctgt ctgcctcggc      4200
     tggaactttc ttcggcgtta ttactcagcc acctgtttca gaaggtccaa gaagcactga      4260
     aactccaaat gaagtgcttt ttctggaccg attcgatgat agtactccag tggatctcat      4320
     caactccatc tcgctggaaa acctttgtgg cgaatagggt gtcagaaata caacatctga      4380
     cggaatgtgg gctttgggcg cacgtgcccg gagttgaaaa tccggcggac atcatctccc      4440
     gcggaatgct gccggcggaa ctcaaggatt gtgctgcgtg gtggaatggt ccaccgtggc      4500
     tcagtcaacc gaacagattc tggcctcccc tagtccgccc aacattggaa gacttcgctg      4560
     tagacgaatt agaggaaaag gttgtagcac taccgatcca agcccagacg cccaacccca      4620
     tctttagtct gcgttcgtcg tatactggat tagtttctct gacggcgtat attttgaggt      4680
     tttcccacaa ctgcaaacaa cggagtccat ctaatcggcg aaccggtttt ctcctggccg      4740
     ccgagtataa ggaagctctc agtgttctag ttcgtgtatc ccagcaagag tcgttgaagg      4800
     aagatattca agccatagcc gctaatggag aggttaaacc taactcgaaa ttaaaaaccc      4860
     ttgcaccgat cttggaggat ggaatcctga aggtcggggg tcgtctacgc aacgcaccag      4920
     tctctgaaac acgcaaacac ccaatgatct tgtcttcaca ccaccctttc acgaagatgg      4980
     tagttgtcta ctatcatcag aagcttcttc acgctggccc gcaactaatg atcgccaact      5040
     tgcgggaacg gttttggcca ctaagagtac gcaacttggc gcgtaaggtg gtgcaagatt      5100
     gcattagatg ctaccgctgc aaacccacgg ttcaggagca actaatgggg gatctcccca      5160
     ccgaacgggt gactcccacc tacccgtttc tgaaaaccgg cgttgacctt tgcggaccat      5220
     tattctaccg ccattatggt cgtaagtccc ctccggtaaa atgctacgtc gccattttcg      5280
     tgtgtctagt caccaaggcg gtacatatcg aattggtggc ggatctaaca acggatgcct      5340
     tcatctcggc cctgaaacgg ttcattgccc gacgctccaa accggccgtc atcgaatgcg      5400
     acaacgcgaa aaactttcaa ggcgcatccc gcgcgttagc cgagctttta acgcaattca      5460
     agtcgcagca gcatcaacat tccgtcagtt ccttttgtgt ggcagaagga attgatttca      5520
     agtttatacc gccccgctcg ccaaacttcg gaggcctctg ggaggccgcc gttaagtcgt      5580
     ttaagaagca cctaaaagcg accatcggaa ccaccgttct cttcaaggac gatcttgaaa      5640
     ccctgctcgt ccagattgag agttgcctga attccaggcc actcacacag ctgtccactg      5700
     atcccgagga cctggaggta cttacaccgg gtcatttttt ggtccaccga cctttggttg      5760
     ctaccgccga accttcgtat gaacaagtgc cccagaaccg acttagtcgt tatcagtcga      5820
     cgcaagaatt tgttcgacga atttggaagc gctggagtac ggattatttg tccggactgc      5880
     acccgcgcac caaatggact cgccagcgcg ataatattgc tgtcggaact ctagtactcc      5940
     tgaaggatga aaaattacca cccctccggt ggtgtctcgg tcgtgtgaca cgactctacc      6000
     atggtgacga cgggaacgtc cgcgtcgtct cagtgaggac aaaggacgga gaattcaacc      6060
     gtgcaataag caaggtctgc gttcttcctg ttcaacagtc agcaaccgct gaagatgatg      6120
     aagttctcgc caacatgtaa cgttgctcaa tcccaacagc gtttaggcgc ttatttgtct      6180
     gtaccgtcgt ttgttaaacg taaactaatg ctttctgtcg tttcatgctg cgcaactgtg      6240
     ccccttcgtc gagattcacc gctcggctgt gtggtcatcc gatcacattg gacgttgttg      6300
     tcgaatccag acaacgacat cgatgaactg gcccccaaat cccatagtca acaagcgaac      6360
     actcaccagg accacagaac ggaatcccgg ataacttcag gttcgaaggt tcaacgaagt      6420
     cgaaggttat catcaatcga tcgaccagcc agaaaatcaa acccagtgaa ttagtataga      6480
     agagtagatt tgaccgcccc gttaaaattt gaatttgtag tagttaagaa gtattgaaaa      6540
     ccatacactt ttcaacggag gccggcta                                         6568
//
ID   BEL-773_AA-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-773_AA-I;
KW   BEL-773_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-280
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-280
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 91-91 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 280 BP; 91 A; 69 C; 39 G; 81 T; 0 other;
     tgttaagaat aagtataatt atgaatcacc ctaatgtaca acagttcaat actattgcaa        60
     tacatctctc ttatcaccta tccgtctgat agcgtgagcg aaaccaagga tctcttttgt       120
     actcccaatc gggtcctgag cgtattttat aactagtata gaatagccag tccagtcagt       180
     cgaataaaaa ccgtcaaacg aagaacatcg tttctcttcg ctaaccaaac cctaattttc       240
     caaatccgat accgagccaa tctagttcac atttcctaca                             280
//
ID   BEL-774_AA-I repbase;    DNA;    INV; 6467 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-774_;
KW   BEL-774_AA-I; BEL-774_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6467
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6467
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 244-244 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1174..5610,5627..6379)
FT                 /product="BEL-774_AA-I_1p"
FT                 /translation="MVPPVGKPPTMRGLTARLKEIQLAFNDIYRFTQRFSE
FT                 ENTITEVEVRTGKLDELWESYSATLVDIFSHDDYNPEKTSLEKERVDFSDR
FT                 YYEIKTFLMDKIKDLQTPAVLDPPNRAAEGATATTSDHVRLPQIKLQTFDG
FT                 EIDDWLSFRDLFTSLIHWKADLPEVEKLHYLKSCLLGEPKALIDPLPITRA
FT                 NYQVAWDLLLKRYNNSKQLRKRQVQALFKLPTLSKESGADLHTLIDGFERI
FT                 VQTLDQVVQPIDYKDLLLLNLLTERLDPVTRRGWEEASSTKQQDTLEDLYE
FT                 FLRRRVQVLDNLPPKSTDTKGVGQTQQKAKPPSMKSSYSSTQASRGRCFAC
FT                 LSDHFLYQCSEFQRMAVSDRDRLLKSHGLCRNCFRSGHQAKECQSKYSCRN
FT                 CKGRHHTLVCFKQEKEKETKVVAVAGGNKASTSKDSQESTNTQVANMAATE
FT                 TAVSAAAHRCPATVLLATAVVILEDDVGNRLPARALLDSGSESNFYTERLS
FT                 QRLQVHRDRVDISVTGISQISTTVQQKVQAVLRSRVSNFSRELGFLVLPKV
FT                 TVNLPTTAINKNRWKIPSGIQLADPAFFEPNVVDLVLGIECFFDFFETGRR
FT                 ISLGEHLPTLNESVFGWIISGGVSVPTRSLHITCNVSALDGLDALVTRFWA
FT                 CEEVEPGKAHSPEEKRCEKWFSSTVQRDTNGKYTVALPRMEDAVSRLGESK
FT                 DIAFRRFQGTERRLTRDSRLREQYVAFMKEYLDLGHMRVVDEDAESATRRV
FT                 YLPHHPVVKEASTTTKVRVVFDASCKTSSGSSLNDVLLAGPVVQEDLRSII
FT                 LRSRTKQIMLVSDVEKMFRQIFIRQEDRPFQCILWRNSPTEILRSYELNTV
FT                 TYGTKPAPFLATRTLQQLALDDEAKFLLAARAAIEDTYMDDVITGADDEEI
FT                 ATALQVQLNTMMSGGGFQLRKWASNCPSVLAGIPQENLAIRTLDEINLDPD
FT                 PSVKTLGLTWTPSTDVLRFQFTILPLDADVIFTKRTILSVVATLFDPLGLL
FT                 GAVIVSAKILLQKLWSIRDKNDQSLGWDDPVPPTVGEEWRNFYEQLPLLNE
FT                 LRIERCVIIPNVVAVEIHCFSDASEKAYGACLYVRSTDAEGNVKVRLLSSK
FT                 SRVAPLKCKPIPRLELCGAVLAAELFEKVRDSIKMNANFFFWTDSTCVLCW
FT                 IDALPSTWTTFVANRAAKIQTITEGYQWNHVPGIQNPADLISRGVTPKDIQ
FT                 KNRLWWEGPAWLEQDSDHWPRSPKISSTEAVEEEKRRTVVATFVSQIAKFN
FT                 HEYISKFSSYSNLVRRTAYWLRLMKLLRKPTSQRSDSAFLSTSELREAENT
FT                 LVRLVQKEVFDEELKAISKGEAVAKGSSLRWFNPFVSQDQLLKLGGRLKHS
FT                 LESEEVKHPVVLPARHPFTRLLLQHYHERLLHAGPQLMLSVIRLRFWPLGG
FT                 RSVVRNIVNNCQKCFRCKPTTVQQFMGDLPAARVTKSRAFYVTGVDYFGPV
FT                 YLLFFYIEDKYKNKIIMLKLKNRPLSARNKLQDFLKLLKSRDHHDAISKEC
FT                 AKDGIQWHFIPPSAPHFGGLWEAAVRSSKHHLLRVVGESPVHPEDFNTLLT
FT                 QVEACLKSRPLTPLSDDPNDLEPLTPAHFLIGTSLQSIPEPVLGELPINRL
FT                 DAVQLTQRRLQDFWKRWRREYLCQLQARTKRWQPAVQVDVGKLVVIKDENQ
FT                 PPTKWKMGRITDVHPGKDGIVRVVTLKTATGILTRPVEKLCILPLPNDDNT
FT                 AKPKDTASQS"
XX
SQ   Sequence 6467 BP; 1691 A; 1588 C; 1582 G; 1606 T; 0 other;
     ttttggtcct tcgaaccgga ttcgagccac aacggaccct ggacttacgg aggccttgac        60
     attgggttga ggctgaaaca aaacggatcg ccatcacttt atttggataa ttaacgccat       120
     caaattacgg aacaattaag ggctttgttc cattcaaaac ctcagaacgc gcgcttagga       180
     cgtagcgtcg ctttccagag acgccatcgc tgctggtcgt ttcgcttggc ttggactttg       240
     ccaaagggag ttttccgcag gttagtgaac tcttgctaat atatgtccag ccaagctaga       300
     caattactcc cctctaacac ctggttttct ctctgcgtgc gatttggtga ttgctgatgt       360
     ggacttaacg ttgatgagga cacggtaact ggtggacatc gcatatacgg accgccctgg       420
     attcacggtt catcacacgt acaaggttgc cacaagaatc atccgtcttt ctggcgaggc       480
     tactcgaggc gacactcaac ctcatcatcc tgctattcag ctggagtata cgacgatttc       540
     gaccatcgtt gaggctactg tgaatcagta tcggcttaag acaggtcgtt caacccaaac       600
     aggtgtgagg catcttccag ttcattggcg tccgacgact tcagcgcaga gaagcagcat       660
     cggcagcatt tgcccaggta attttagaat aagtatactg ccgaagctag gcaaatgaaa       720
     atacaccata ttgattcaga accaaatcct cttcgtgtta cctctctgaa cgcagagccc       780
     tgcttgccct tctgggctcc tccgtctttg acttggattt gttggttgaa attggagttg       840
     gacatcgtcc actgattcat atatctggga attaatttac cgcttggtgt tgcaattgtt       900
     tcctgtggtg agttgtgcag tatatgcctg gccgaagcca tctctttgga tactacacca       960
     tattatcccc tcttcatcca tcccttgatc gagtgattgc tgttgtgacg atttgggtac      1020
     aaggctgtat gcgtggttga ttgattgaat tggagcatcg cttgattaat tgtcgggtaa      1080
     tttaaagtag tatatgcctg gcgaagctag gcccttgcag tatactacac cgcacctctc      1140
     tcttctcact actcgcatta ccctgacgac aacatggttc caccggttgg caaaccgccg      1200
     acgatgaggg gattgacagc acggttgaag gagattcaac tggctttcaa cgacatctac      1260
     cggtttacgc agaggttttc tgaggagaac accatcaccg aggtggaagt acgcacggga      1320
     aaactggacg agctttggga gagttacagc gctactttgg tggacatttt ctctcacgac      1380
     gactacaacc cggaaaagac gtcactagag aaggaacgtg tggatttcag cgatcgctac      1440
     tacgagatta agaccttcct aatggacaag atcaaggacc ttcagacacc agcagtattg      1500
     gatccgccta accgggccgc tgaaggtgca acagcgacta ctagcgatca cgtccgtctg      1560
     ccgcaaataa aactacagac gttcgacggg gaaatcgatg attggctaag tttccgtgat      1620
     ttgttcacat cgctcatcca ctggaaggcg gatttaccgg aggttgaaaa gcttcattac      1680
     ctgaaaagct gccttctagg agaacccaag gcccttatcg atccacttcc aataacgagg      1740
     gccaactatc aggtggcgtg ggatttgctg ttgaagcgtt acaacaacag caagcagctg      1800
     aggaagcggc aggtacaagc tcttttcaag ctgcccacac tctccaagga atctggagct      1860
     gatctacata ccttaataga cggcttcgaa cgaattgtgc agactctcga tcaggtcgta      1920
     caaccaattg actacaagga ccttttgttg ttgaatctcc tcactgaacg attggatcct      1980
     gtcacgcgaa gggggtggga agaggcttca tccacgaaac aacaggacac attggaggac      2040
     ttgtacgaat ttctgcggcg tcgggtccaa gtattggaca atcttccacc aaaatctact      2100
     gacactaagg gtgtcggtca aacgcagcag aaggcgaagc caccatccat gaagtccagc      2160
     tacagttcaa cccaggcgtc taggggacgc tgctttgcct gtttgtcgga tcatttcctc      2220
     taccagtgca gcgagtttca acggatggca gtatcggatc gggatcgtct actgaagtcc      2280
     catggacttt gtcggaactg cttcaggagc ggtcatcaag ctaaggaatg ccaatccaaa      2340
     tattcctgta ggaactgcaa ggggcgacat cataccctag tatgtttcaa gcaggaaaag      2400
     gaaaaggaaa ccaaggttgt ggcagttgct gggggcaaca aggcgtctac ttccaaggac      2460
     tcacaggaat caaccaacac ccaagtggct aacatggcag ccacggaaac tgcagtgtcc      2520
     gctgcagctc atcgatgtcc agcaacggtt cttctggcaa cagctgttgt cattctcgag      2580
     gacgatgtcg gaaatcgtct ccctgctcgt gcgctgctgg actccgggtc ggaaagtaat      2640
     ttttatacag aacgactcag tcaacggtta caagtccacc gagatcgcgt tgacatttca      2700
     gtgacaggaa tcagccaaat atctaccacg gttcaacaga aggttcaagc ggttttacgg      2760
     tcacgagttt caaacttttc tcgtgagcta ggcttcctgg tgcttccaaa ggtcacagtt      2820
     aatctcccaa caaccgctat caacaagaat cggtggaaaa ttccaagtgg gattcaattg      2880
     gcggatcctg cattcttcga gccgaacgtg gtggacctcg tactcggcat agagtgtttc      2940
     ttcgattttt tcgaaaccgg aaggaggatt tccctgggag aacatcttcc aaccctaaac      3000
     gaatccgtgt ttggttggat aatcagcggc ggagtttcgg ttccaactcg ttctcttcat      3060
     atcacctgca acgtgtccgc gttggatggt ttagatgcct tggtcactcg cttttgggct      3120
     tgcgaggagg tagagccagg taaggctcat tcgccagaag agaagcgctg tgaaaaatgg      3180
     ttttctagca cagtacagcg ggatacaaac ggaaagtata ccgttgcgct accaaggatg      3240
     gaagatgctg tttcacggtt gggtgagtcg aaagacatag ctttccggcg tttccaagga      3300
     accgagagga ggttgaccag ggactcaagg ctccgggaac agtacgttgc gttcatgaag      3360
     gagtatctcg acctcggcca catgagggtg gtcgatgaag atgctgagag tgcaacaagg      3420
     cgggtgtatt taccacatca tcccgtggtg aaggaggctt ctaccacaac caaagtcagg      3480
     gtggttttcg acgcttcttg taagacgtcg tccggatcat ccctcaatga tgtactgctg      3540
     gcggggccgg ttgtacagga agatctacgg tccatcattc tccgcagtcg aacgaagcaa      3600
     atcatgctgg tctcggatgt agaaaaaatg tttcgtcaaa tctttattcg gcaagaagat      3660
     cgtccatttc agtgtatcct ttggcgaaac tcacctacgg agatccttcg ctcatacgag      3720
     ctgaatacgg tgacatacgg gacaaagcca gcgcctttct tagccaccag gacgcttcaa      3780
     cagctcgctt tggatgacga agcaaaattt ctactcgcgg cgcgagcagc aatagaagac      3840
     acctacatgg atgacgtcat tacgggtgca gacgacgaag aaatcgcaac ggcattgcag      3900
     gttcaactaa atacaatgat gtctggagga ggttttcaac ttcggaaatg ggcgtctaac      3960
     tgcccgtctg ttctagccgg cattccccaa gagaacttgg ccattcgcac tttggatgaa      4020
     atcaacttgg acccagatcc atcagtaaaa accttgggct tgacctggac tccgtctaca      4080
     gatgttctaa ggtttcaatt caccattctt ccgttggatg ctgacgtaat cttcaccaag      4140
     cgcaccatat tatcagtcgt tgcaacctta ttcgaccctc taggactcct gggagctgtt      4200
     atagtttcgg cgaagatact tctacagaag ctgtggagta tacgtgacaa aaatgatcaa      4260
     tcgctcggat gggacgaccc ggtaccacca acggtgggtg aggaatggag aaacttttac      4320
     gaacagctac cacttctcaa tgaactgcgt atcgaacggt gcgttatcat cccaaatgta      4380
     gttgcggtcg aaatccactg cttctctgac gcctcagaaa aggcttatgg tgcctgtttg      4440
     tacgtccgta gtacggatgc cgaaggaaac gtgaaggtac ggttactctc ttccaaatca      4500
     cgagttgcgc cgctgaaatg taaacccatt cccagactgg aactttgtgg agcggttttg      4560
     gccgctgaac ttttcgaaaa ggtccgagat tcaatcaaaa tgaatgcaaa tttcttcttc      4620
     tggacggatt ccacgtgtgt tctttgttgg atcgatgcgc ttccctcgac ctggacgacg      4680
     ttcgtcgcta accgtgcagc gaaaattcaa actatcacag aaggctatca gtggaaccac      4740
     gtgccaggta ttcagaaccc ggcagacctg atttcacgag gagtcacacc caaggatatc      4800
     cagaagaacc gactctggtg ggaaggtccg gcatggctgg aacaagattc agatcattgg      4860
     cctagatcac cgaagatttc ttcaacagaa gcagtggaag aagaaaaacg gcgtacggtt      4920
     gtcgcaacat ttgtatccca aatcgccaag ttcaaccatg agtacatcag caagttttcg      4980
     tcgtattcca atctcgttcg tcgcactgca tactggttgc gtttaatgaa acttcttcgt      5040
     aaaccaactt ctcagaggag cgactcagca tttctttcaa cgtctgaatt gcgggaggcg      5100
     gaaaacacct tggttcgcct agtacagaag gaagtattcg atgaggagct gaaggctatt      5160
     tcaaagggcg aagcggttgc taagggatcg agtttgcggt ggtttaatcc tttcgtatct      5220
     caggatcagc tgctcaaatt aggcggacgg ctcaaacatt cgttggagtc agaagaagtg      5280
     aagcatccgg ttgtcttgcc tgcccgtcac ccattcactc gtttacttct tcagcactac      5340
     cacgaacgcc ttcttcatgc ggggccacag ctgatgctta gcgtgatcag actccgattt      5400
     tggccattag gaggtaggag tgtcgttcgg aacatcgtga acaactgcca aaaatgtttt      5460
     cgttgcaagc cgacaactgt tcagcagttc atgggagatc taccggcagc gcgagtcacc      5520
     aaatctcgtg cattctatgt tactggagtg gattacttcg gcccagttta tctccttttt      5580
     ttttatatcg aagataaata taaaaataaa taaaaaaaat aaataaatta ttatgctgaa      5640
     gttaaagaac cggcctttga gcgctcgcaa caaattgcaa gacttcctga agttgctgaa      5700
     gagccgcgat caccacgatg ccatatctaa ggaatgtgcc aaagatggaa tccagtggca      5760
     ttttatccca ccaagcgccc cccactttgg aggcttatgg gaagccgccg tacgttcgtc      5820
     gaaacaccac ctgctacgag ttgttggcga atcacctgtt caccccgaag atttcaacac      5880
     gctgcttacc caggttgaag cctgcctcaa atctcgcccc cttacgcctc tttccgacga      5940
     cccgaatgac cttgaacccc tgacgcccgc gcatttcctg attgggacat cccttcagtc      6000
     gattccggaa ccagttttag gagaactgcc catcaatcgc ctagatgccg ttcagctaac      6060
     tcaaagaagg ctacaggact tctggaaacg atggcgcaga gaatacctct gccaactgca      6120
     agcccggacg aaacgatggc agccagctgt tcaagtcgac gtaggcaaat tagtggtcat      6180
     caaggacgaa aatcaaccgc ccacgaaatg gaaaatggga cgtataacag atgttcaccc      6240
     cggaaaggac ggaattgtga gagtagttac ccttaaaact gccaccggta tattgaccag      6300
     accggtcgaa aagctttgta tcctgccgct tccaaatgac gataatactg cgaagccaaa      6360
     agatacagcc agccaatctt aatcccttcc caccatccca tcccgacgaa gaggatctct      6420
     tctctttttt ctttcagaaa ttcgaggaat ttcagggtgg gtgaggg                    6467
//
ID   BEL-774_AA-LTR repbase;    DNA;    INV; 804 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-774_AA-I;
KW   BEL-774_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-804
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-804
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 92-92 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 804 BP; 238 A; 205 C; 174 G; 187 T; 0 other;
     tgttcatgtg tacaacaacc ccaccagatt acaactctgt cacccccagc tgatatcacc        60
     acaaaaatct aacggtcaac ggtggcaaga tagtcggctg gctattatac gattgagcct       120
     catagatctc ctaaaccaag cagcgataca gtcgagccat ccatcacata ccggattggg       180
     agatgagaac gaccattgca gagctcgctc accgtacgat ctccagcatc cacaaagatg       240
     ctcaattcat catcgtcatc atcattacca tcatcacagc tataggagtg ataaggagga       300
     ccgataaccc actgataata acggtgagaa tctctccaag gccgacgaag aaaatcatcg       360
     catcgcagct ccggaggact gacggagcag actattcgga gcgatggaca gtccacatcc       420
     agcaggtcac cgatgcacac gggcagcgga cctacggccg gtttatcatc cgatcaattt       480
     taattcgttt gtaattgtgt tagtgtttaa gtcaaaaatt aaattaacag ttttaagcgt       540
     aataaaccga gtttagcatg ttagctacta gtttaaataa agtgccgtgt aatcagctaa       600
     ccgccgcgag ttgaatttat tcgattggtc caggcaaact ccagaaacgg ccaatgattg       660
     aagactggac aaccacgctg tgaagtgcat gcaacggttt cttttgtgtg gctggagcca       720
     atttatcccg atgttggggg caggattccc caccagtatt aaccactgag cttagaccga       780
     aggtaaccgc cccaaccccc ttca                                              804
//
ID   BEL-775_AA-I repbase;    DNA;    INV; 5581 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-775_;
KW   BEL-775_AA-I; BEL-775_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5581
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5581
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 245-245 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..5550
FT                 /product="BEL-775_AA-I_1p"
FT                 /translation="MPLEHSPAKGTTDPADVVNFRVQRQQQSESDSNEHQM
FT                 EIAADSEMMVRIKALSRQRHHVLNKVFRIQESLDRQLGLPELEGLLCNLQS
FT                 AYTEFSGFHSQIIAIIPDDAMEQEEGAYVRFEALYNLTFAGVKKRIMDRQA
FT                 NPAPQVVIHQQPLKAPIPTFDGDYANWPKFKAMFQDVIXLSRDSDAVKLYH
FT                 LDKALVGAAAGVLDAKTLNEGDYAHAWRILTDRYENQRMIVETHIRGLLSL
FT                 KKMASRSSKQLQQLVDECTKHVESLEYQNQPLTGVSELVVVYLLSAALDDS
FT                 TRLQWEQSLATTTDLPKYKETVDFLKSQCKVLERWEVARSMTTTNMNANTK
FT                 PPTPKPKQVNQQAHAAATSSQETTDRCDFCSGSHLNFQCNKLNALSANERM
FT                 EKVKAAGVCFNCLRKGHRSKDCPSSKTCRKCQRRHHTQLHDDSPNMTTKSN
FT                 LNAISTILDEPKQASAPVPSASNPIQKSEQSLSTSCSCQGMQSPKTVLLLT
FT                 AVILVSDENGQQQKCRVLLDSGSQVNFISEKMANSLGIQRQPAGVPIAGIN
FT                 NIRTTARDKIEVSVQSRCSDFRAKLECLVIPKVTGTIPCKSIDTSSWNIPV
FT                 GIQLADPKFFRADSIDMLIGAELFFRLLKPGHIIIDEHLPELRESHFGWLI
FT                 AGAIPTDASLEDIRYSQVASIEDIADSIHKFWEVEEVPNAIAMSSEEQQCE
FT                 QHFMSTYNREPNGRFTVRLPMKNNVGELDSCRSLALKRFYMLENRLQRNPD
FT                 LKTQYVNFIQEYQHLGHCREVDETNDDVGRKTYYLPHHAVLRPSSSTTKCR
FT                 VVFDASAKSAEDHLSLNEVLLVGPVVQSELYDILLRARMRRYVFSADISKM
FT                 YRQIRMHHDDSRFLRIFWRDDPTKPLRVLELTTVTYGTASAPFQATRCLNQ
FT                 LAEDERQDFPMAAEIVTNDCYVDDILSGTDTLEEAIDAQRQLKGMLAKGGF
FT                 PIHKWCSNSPELLDRIPEAEREQTKNIEDNDINQVIKILGLLWDPSTDELL
FT                 PAGIPSSNDDSSQRRRTTKRIIYSEVAKLFDPLGLFAPTIVLAKLLVQQLW
FT                 RTQKGWDDPLDDDTEQQWIRLKQSLPLLKDFPIPRQVTVNEAVRFELHGFA
FT                 DASNVAFGACIYIRSIQSDGSAISRLLTSKSKVAPLRDVSIPRKELCAALL
FT                 LARLLERVLVAIPTKFHRVILWSDSEIVLAWLKKHPGQLEVFVRNRVAEIQ
FT                 RLTEGLTWNYIRSLSNPADIVSRGKTSVDLVTSGLWWDGPPFLNEPVFNIE
FT                 TPEDIPDSELPELKPAAIITMASFEEQHPELTKYSSFRKLQRVIAWVLRFK
FT                 NNTHKKTTQRILQRHLTVSELRQSMVVILRVVQHVELSDEIHRIETNTRCK
FT                 RLQDLHPIYDENLLRVGGRLTQSRLPEVAKHQIILPNKNTVTELLVRALHE
FT                 EHLHVGPAGLLSALRQRFWLLNARSTVRKVIRSCVKCFRTNPSDVSQLMGE
FT                 LPKQRVTPSPPFSVTGVDYAGPMLIKQGSYRPKVVKAYIAVFVCMSTKAVH
FT                 LELVSDLTTDAFIAALQRFVSRRGIVSEMHSDNATNFRGAQHELHHLYELF
FT                 QKEHEVNRIIRYCQSKEMEWQFIPPDAPEFGGLWEAAVKSTKNHLKRVIGN
FT                 VKLTFEEMVTVLCEIEAILNSRPLFTVYNDPADPEVITPSHYLIGRPMTAI
FT                 PEPTYTDVKISRLTRWQHMQLMREHFWRAWSRDYLSSLQPRKKNRMEIANV
FT                 RPGMIVLLQDKNQPPLHWKLGRVTAVYPGPDNLVRAVDVYSEGTTFRRAIT
FT                 KLSILPIEDNHPTRYSQ"
XX
SQ   Sequence 5581 BP; 1560 A; 1410 C; 1391 G; 1219 T; 1 other;
     ttggtccttc gagccggatt gtggttcccg attgctgtcc cgaaggtgtg aggagaaatt        60
     gccgaccaac cagcaagcag tgccgcttgc atcgaaacgc cgatcagtga agcagaaaag       120
     tgcgcgaaag aagccgagaa taatcgagct tctcggaaga cagtgagtgt aaaaccctga       180
     acgaaaatgc cgctagaaca ttctcctgcg aaggggacga ccgatcctgc cgacgttgtg       240
     aattttcgtg tgcaacgaca gcagcaaagt gagagcgatt ccaacgagca ccagatggag       300
     atagctgccg acagtgaaat gatggtgcga attaaagcat tatcacgcca acgacatcat       360
     gtgctgaata aagtgttccg catccaggaa tcattagatc gccaactcgg attgccagaa       420
     ctggaaggtt tgctgtgcaa tttgcagtcg gcgtacacgg aattctctgg cttccacagt       480
     cagataatag cgattatccc ggacgacgca atggaacaag aagaaggagc ttatgtacga       540
     ttcgaagctc tgtacaacct gacgtttgcc ggagtgaaga agcgtattat ggatcgacaa       600
     gccaatcctg cgccgcaagt ggtcatccat cagcagccgc tgaaagcgcc aattccgacc       660
     ttcgatggcg actacgcgaa ctggccaaag ttcaaggcta tgttccaaga cgtcattkcg       720
     ctttctcggg attcggatgc agtgaagctg taccacctgg acaaggcact ggtaggagca       780
     gctgctggag tactcgacgc gaagacgctg aacgaaggag attacgccca cgcatggcga       840
     atcctaaccg accgctacga gaatcaacga atgatagtgg agactcacat ccgtgggctc       900
     ttatcgctga agaagatggc atcgcgatcc agcaagcagc ttcaacaact ggtcgacgaa       960
     tgtacgaagc acgtagagag tttggaatac caaaaccagc cactaacagg agtgtccgag      1020
     ctggtggtgg tgtacctact ctcagccgcc cttgacgatt caacgaggtt gcaatgggag      1080
     caatctcttg cgacgacgac cgatctgccg aaatacaagg aaacggtaga cttcctcaaa      1140
     tcccagtgca aggtgctgga aagatgggaa gtcgcccgtt caatgacgac aaccaatatg      1200
     aacgccaaca cgaaaccgcc tacgccgaag ccgaagcaag tcaaccagca agcgcatgca      1260
     gcagcaacat cgagccagga aacgacggac aggtgcgact tttgcagtgg ttctcacttg      1320
     aacttccaat gcaacaagtt gaacgcactg tccgccaatg aaagaatgga gaaggtaaag      1380
     gcagctggtg tttgcttcaa ttgcctacgg aaggggcatc gatcgaagga ttgtccgtcg      1440
     tcgaaaacct gtcggaagtg tcagcgacgt caccacactc aacttcatga cgacagcccc      1500
     aacatgacga cgaagtccaa cctgaatgca atttcaacaa ttctcgacga gccgaagcag      1560
     gctagtgcac ctgttccatc cgcatcgaat ccgattcaaa aaagcgagca atccttgtcc      1620
     accagttgct cgtgtcaggg aatgcagtca ccgaagacag tgttgttgct caccgcagtc      1680
     atcttggtga gtgacgaaaa cggacaacag cagaagtgcc gcgttctcct ggacagtggc      1740
     tcccaggtga atttcatcag cgagaagatg gccaattccc ttggcatcca aagacagccc      1800
     gccggtgtgc cgatagccgg catcaacaac atccgaacga ctgctcgtga caagatagag      1860
     gtgagtgtgc agtctcgttg cagcgatttc cgcgccaagc tggaatgctt ggtaatacca      1920
     aaagttactg gcacaatccc gtgcaagtcc atcgacacgt caagttggaa cattcctgtt      1980
     ggtatccaac tagccgatcc gaaattcttc cgggccgata gcattgacat gctgatcgga      2040
     gcagagctgt tcttccgact attgaaacca gggcacatca tcatcgacga acacctgcca      2100
     gagctacgag agtcgcactt tgggtggctc atagcaggtg ctattccaac cgatgcgtca      2160
     ttggaggaca tccgctattc gcaagtggca tcgattgaag atatcgccga ttcgatccac      2220
     aaattttggg aagtggaaga agtaccgaac gccatagcga tgtcatccga agagcaacag      2280
     tgtgagcaac atttcatgtc tacgtacaac cgagaaccta atggcaggtt cacagtccga      2340
     ctaccgatga agaacaacgt tggtgaattg gacagctgtc gttctttggc attaaagcgt      2400
     ttttacatgc tggagaacag gctgcaacga aatcccgacc tgaagacgca gtacgtcaac      2460
     ttcatccagg aatatcaaca tctcggtcac tgccgggagg ttgacgaaac caacgacgat      2520
     gtcggtagga agacatacta tttgccacac cacgcagttc tccgccctag cagctccacg      2580
     acgaagtgta gggtggtatt tgatgcgagt gccaaatcag ccgaagacca cttatccctc      2640
     aacgaagttt tgctggtggg accggtggtg cagagcgaac tttacgatat tctgctacga      2700
     gctcggatgc gcaggtacgt tttttcggcc gatatttcaa aaatgtaccg gcaaatccga      2760
     atgcatcacg acgactccag attcctgcga attttctgga gagacgaccc gacgaagcca      2820
     ctgagagttc tggaattgac tacggtcact tacggaactg catctgcacc tttccaagca      2880
     acaaggtgct tgaatcaact cgccgaagac gaacgtcaag attttcccat ggctgcagag      2940
     attgtaacga acgattgtta tgttgacgac atcctgtcgg gtacagacac gctggaggaa      3000
     gccatcgatg cgcagcgcca gctgaaaggc atgctggcga aaggtgggtt tccaatccac      3060
     aaatggtgct ccaattcacc ggagcttctt gaccgcattc ctgaagccga acgggaacaa      3120
     acgaagaaca tcgaagacaa cgacatcaac caggtaatca aaattcttgg cttactatgg      3180
     gatccatcga cagatgaatt gctaccagct ggaatcccaa gttccaatga cgatagcagt      3240
     caacgacgca gaacaacgaa acgaatcatc tactccgaag tagcgaaact tttcgaccca      3300
     cttggactgt ttgcacctac catcgttctc gctaaattgc ttgtgcaaca actttggcga      3360
     acacagaaag ggtgggacga tccactcgat gacgacaccg aacaacagtg gatcagactg      3420
     aagcagtcgc taccgttgct gaaagatttc ccgataccac gtcaagtcac cgtcaacgaa      3480
     gctgttaggt tcgagctgca cggttttgct gatgcctcca atgtggcatt tggagcatgc      3540
     atctacattc gcagcatcca gtccgacggt tctgccatat cgcgtttgct aaccagcaaa      3600
     tccaaggtgg caccattgcg cgacgtatcc atcccacgca aggaactgtg cgccgccctc      3660
     ttgctagctc gcttgttgga aagagtcctg gttgccatcc cgactaaatt ccatcgagtg      3720
     attttatggt ccgacagcga aatagttttg gcttggctaa aaaagcatcc cggccaactg      3780
     gaagtgtttg tccgcaatcg cgtcgccgag attcaacgtc tcaccgaagg acttacgtgg      3840
     aattatatcc gatcattatc caatcctgcg gatattgttt caaggggaaa aacttccgtc      3900
     gatttggtca ccagtggtct atggtgggat ggtcctccat tcctcaacga gccggttttc      3960
     aacatcgaga cacctgaaga catccccgac agcgaattgc cagaattgaa accagcagcc      4020
     ataataacga tggcttcatt cgaggagcag catccggaac ttacgaagta tagttccttt      4080
     cgcaagttgc aacgagtcat cgcttgggtt ctacgcttca agaacaacac ccataagaag      4140
     acaactcagc gtattctgca acgacacttg accgtcagtg agctacgaca atcaatggta      4200
     gttattttgc gtgttgttca acatgtggaa ctgagcgacg agatacaccg aatcgaaacc      4260
     aacaccaggt gcaagcgtct acaagatctg catccaatct acgatgaaaa tctactacga      4320
     gttggtggaa gactcacaca atcacgacta cctgaagtag cgaagcatca aatcatcttg      4380
     ccaaacaaga atacagtaac agagttgctg gtacgagcat tgcacgagga gcatttgcat      4440
     gtaggaccag ctggattgtt gtctgcactg aggcaacgat tttggttgtt gaatgcccga      4500
     tcgacagtac gaaaggtaat ccgatcgtgt gtgaagtgct tccgaacgaa tccatctgac      4560
     gtttcccagt tgatgggaga gctaccgaaa caacgagtga ctccatcgcc gccgttcagc      4620
     gttactggcg ttgattacgc tggcccgatg ctgataaagc aaggatcgta tcgaccgaag      4680
     gtggtgaaag cgtacatcgc agtattcgtt tgcatgtcca ctaaggctgt gcatcttgag      4740
     ttggtgtcag atctgaccac cgacgctttc atcgcagctt tgcaacgttt tgtcagccgc      4800
     cgtggaatcg tatcggaaat gcactccgat aatgcaacca acttcagagg tgctcaacac      4860
     gaactacatc atctctacga actgtttcag aaggagcacg aagtcaatcg catcatccga      4920
     tattgtcaat ccaaggaaat ggagtggcaa ttcattccgc cagatgcacc ggagttcggc      4980
     ggtctatggg aggccgccgt taaaagcacg aaaaatcacc tgaaacgagt aattggaaac      5040
     gttaagctga cgtttgagga aatggttacg gtgctgtgtg agattgaagc aatactcaac      5100
     tcacgcccac tatttaccgt ttacaacgac cctgcagatc ccgaggtgat tacgccatcg      5160
     cattacttga ttggccgtcc gatgacggca attcctgagc caacctacac cgacgtgaag      5220
     atcagccgat tgacccgttg gcagcacatg caattaatgc gtgaacattt ttggcgagcc      5280
     tggtccagag actatctgtc aagtttgcag ccaaggaaga aaaaccgtat ggagatcgca      5340
     aacgtgcgac caggtatgat tgttcttctc caagacaaga atcaaccacc actgcattgg      5400
     aagcttggcc gtgtaactgc tgtgtatcca ggaccagata acttggtacg agctgtggat      5460
     gtgtacagcg aaggaacaac atttcgtcgt gccatcacga agttatcaat tttgcccatc      5520
     gaagataatc acccaactag atacagccaa taattgaacc gatggtccac cggggggtgt      5580
     a                                                                      5581
//
ID   BEL-775_AA-LTR repbase;    DNA;    INV; 474 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-775_AA-I;
KW   BEL-775_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-474
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-474
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 93-93 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 474 BP; 153 A; 124 C; 100 G; 97 T; 0 other;
     tgttgcgtac gcaagaaata tcattcgagc caatttgcgt acccccgacg tagcctacgc        60
     aaatctggca acgtgcaatc gcctctccac acatcatcct gtgcgcaaag cgaggagacc       120
     acaggatgga aaattccacg aaactatgcg cagaaaatct acctccaccg agatgcgtgg       180
     agactcgttt gcaaaacagg ctccagcacg caacaaaaag gacaagcgaa ggagaaacat       240
     catcagtatt tttcaacgag tggaatgacc aacaccaaga gaagaaagtg aattaatgtc       300
     aagttaaagt tttgttcaat acagtagtca gaaagtgatt gaagtgtttt ttcttggctt       360
     agccaattcg cttagccgaa acccccaagg attctcctca cgctgagtcc accgccagat       420
     acagcaactt gggcaccacc gaaattacag tccacgagat catcgccccg aaca             474
//
ID   BEL-776_AA-I repbase;    DNA;    INV; 6568 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-776_;
KW   BEL-776_AA-I; BEL-776_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6568
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6568
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 246-246 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1152..6452
FT                 /product="BEL-776_AA-I_1p"
FT                 /translation="MSRSQASYKLLVAKLNDVIFSFNDIWKFVEKFPEDST
FT                 ISQITVRLDRLDDLWERFSDYLIEIKTHDNHDDEQNPYVNERQLFSDRYYE
FT                 AKAFLMEKVKLKQEPEELNLSGRGLNVSGIGNLDHVRLPQIKLQTFSGNIE
FT                 EWLSFRDLFSSLIHCKADLPEVEKFYYLKGCLQGEPKNLIDSLQITSANYK
FT                 IAWDLLQKRYDNSKHLKKLQVQALFKLPSLAKESSSELHTLVEGFEKIVQT
FT                 LDHIVQPGDYRDLLLVHILSTRLDPVTRRGWEELSSANQQDSVKELTEYLQ
FT                 RRIRMLESLPGKSLDTKNVFQYQQPGKPKPSSIKTSFSSIQTTGGRCAACS
FT                 ANHPLFQCNSFHRLPLPEREAVLRNHSLCRNCFKPGHHAKECQSKFSCRYC
FT                 KGRHHSLVCFRVDKDNSSKSVAAPKSTKSIGAREDKDSTETPSANSSTPSL
FT                 QVSNVATTDRVVAFGSAHSSQVLLATAIVIVEDNSGHRYPARALLDSGSES
FT                 NFVTERLSQRMKTTRCKVDVKIHGIGQVKANVKQRIEATIRSRVSDFSQRM
FT                 SFLVLPKVTVNLPTSSINIAKWNIPDGIELADPSFNMSMNVDMVLGIESFF
FT                 NFFRNGRQILLGEQLPALNESVFGWVVCGGVPVSSQSLNISCNLSTSVDLD
FT                 ELLARFWSCEEVGSDEKHSPQEKGCEEHFVRTVQRGRDGRYTVSLPKNEEA
FT                 LEQIGESRKIAVNRLFSTERRLARNDDLRNQYCSFMEEYLQLGHMNKVEVV
FT                 QILPKRCYLPHHPVIKEASTTTKVRVVFNASSETTTRVSLNDALMVGPIIQ
FT                 DDLRSIIMRSRTKQIMIAADVEKMFRQILVCDEDRPLQSILWRSTPEEEIG
FT                 TYELNTVTYGTKPAPFLATRVLKQLSDDEEDRFPLAARAVREDTYMDDVIT
FT                 GTDEVDEAIALRAQLQNLMSAGGFRLRKWASNHRGVLAGVLEEDLAISSAK
FT                 EISLDPDPSVKTLGLTWQPGTDTLRFQFSIPSMDEANPLTKRKVLSVIATL
FT                 FDPIGLIGAAITSFKVFMQLLWTLKDETGERIGWDQPLPKPVCEAWQNYYQ
FT                 QLPLLNQIRISRCVIIPQALKVELHCFSDASEKAYGGCIYVRSEDVNRNVL
FT                 VRLFASKSKVAPLKSQTIPRLELCGALLTAELHERVKQAIRIEVKTYFWTD
FT                 STCVLRWIAATPSTWSTYVGNRCAKIQRLSENCIWQHVPGIQNPADLISRG
FT                 ITPENIAENNFWWQGPNWLLEGPENWPLTLGLPSSEEVETEKRRTVTAATT
FT                 MTSEEFMEGYVAKFSSYSTLIRTTAIWQRTMKLLRTPKDDRKVAYLSTDDL
FT                 KEAEHTIIRKVQRAIMADEWKALTSKESVSSKSPLRWLNPYISSEGIIRVG
FT                 GRLEHSVESRDVKHPIVLPKGHRLTRLLVEHYHKRLLHAGPQLLLSTIRLK
FT                 YWPLGGRNIVRKVVHSCHKCFRARPVTVKQFMGELPAQRVTVSRPFSRTGI
FT                 DFFGPVYVRPGPRRTAVKAYGAIFICLATKAIHIELVSDLSTDRFIQALRR
FT                 FIGRRGRCAEIFSDNGTNFVGARNRLRDLLLMLRDKDHKAKMNNYCLNEGI
FT                 KWHFSPPSGPHFGGLWEAAVRSTKYHLQRVVGETPMSLEDMNTLLVQVEAC
FT                 LNSRPITALSEDPSDLEPLTPAHFLIGSSLQSLPETDVTAMPLNRLTQLEA
FT                 VQRKFQDFWKRWRQEYLSQLQGRTKRWRPPVKIEAGKLVVVCDDNLPPLRW
FT                 KLGRIEQTHPGSDGVVRVVTIRTASGSFKRPVEKVCLLPEPIMEPEF"
XX
SQ   Sequence 6568 BP; 1845 A; 1448 C; 1557 G; 1718 T; 0 other;
     tatggtcctt cgaaccggat gaagcgtgaa ccagatcgca taacgatttc ccattgaatt        60
     tggtaccgcg tttttactat tgccattgtc accaagctac aatagctgat agcaatcctg       120
     ccgagaagaa tagaaaagta cgtggacaaa ggaataaggc tcttggcgcg tacaagccaa       180
     gccatcgttg ccctgtttgg tttcctgtac taaggattca gggtaatcgc cactagcatc       240
     gggttggaag acaacactaa gtttacgccg cctgtgggat ttccaggtaa ttgctaaata       300
     cttagtgtat gtcttgtcga agctagacat ttctacgatc taacaccgct tttcgttctc       360
     tactgcacta ctcatcacaa ttacggagcc atcgagtcat cgtcgtacgc aacaagggtc       420
     acagatagca acactggttc tggatcgctc ccatctaccg aagaagcgga tgcaagcaag       480
     gaggcagcga cgtggtactt tctccaggtt agtgaacact tagtgtgtgt ctgccgaagt       540
     gtggacgtcg gatattccac attttaaata aattgtatcc tctttggctt gctcccacac       600
     tcctacatgc aattaccgat tgttgaggct aacacaatca aaatttgaac gtttggactt       660
     cggatacgtt cattgatttc cgggcattgg tacaccgttg ttttctctgg gtgagttgca       720
     cggtatatgt cccgccgaag tattttattt ggatactacc taattcgtcc ctcctcttca       780
     ttccttttgg attgcaccaa ggattgaatt tccttccggt tataacatta tcacacggtg       840
     atactattgc tgctttgtga cgctgttcac tccgtcaggt gagttgaaca gtatatgtgc       900
     agccgaagca aggttttttg gatactaccg cctcgttttt ctcctctttt atcaaccctc       960
     ccttgagaca ccaagtaatc gacgtaaatt ggacaacctt ctggtaaagg attctgcaaa      1020
     gcgcgtttga atcttcaacg ccgtttaagg tcagttaagc acggtatatg tcctagcgag      1080
     gctaggtcaa ttacgcagaa tactacacca atattttcat ccgttcaacg ccaaccgttg      1140
     cggggatcat catgtcgagg agccaagcat catacaagct gttggtagcg aagttgaatg      1200
     acgtcatttt ttccttcaac gatatatgga agttcgtcga gaagtttccg gaggattcta      1260
     ccattagtca aattacggtc cgcttggaca gacttgacga cctttgggaa aggttttccg      1320
     attatctcat cgagatcaaa acccatgata atcatgatga tgaacagaat ccttatgtga      1380
     atgagaggca gttgttcagc gatcgctact atgaagcgaa ggcgtttctg atggaaaagg      1440
     ttaaactgaa gcaggaacca gaggagttaa atctctccgg caggggttta aatgtatctg      1500
     gcattggtaa tcttgaccat gttaggttac cccagattaa acttcaaacc ttcagtggaa      1560
     atattgaaga gtggctcagt ttccgggatc tattctcttc tcttatccat tgcaaggcgg      1620
     atcttcctga agtcgaaaag ttttattacc tcaagggatg tctccaaggg gaaccgaaga      1680
     atttgatcga ttctcttcaa atcacgagcg caaactataa gattgcatgg gatctccttc      1740
     aaaagcggta cgataacagc aaacacctta agaaactcca agttcaagct cttttcaagc      1800
     ttcccagttt ggctaaggag tcttcatccg aactacacac gctggtagaa ggatttgaaa      1860
     aaatagtgca gactttagat cacattgtcc agcctggtga ctatagggat ctactgttgg      1920
     tccacatcct atcaacacga ttggacccag taacgcgtag agggtgggag gagttgtctt      1980
     ctgcgaacca acaggattcg gtgaaggaac tgactgaata tcttcaacgt cgaattcgaa      2040
     tgctggaatc gcttccgggg aagtcattag acacgaaaaa tgtcttccaa tatcagcaac      2100
     caggaaaacc caagccatcc tctattaaga ccagtttcag ttccatccaa accactggag      2160
     gtcgttgtgc agcatgcagt gccaatcacc cattatttca gtgtaacagt ttccaccggc      2220
     tgccactacc agaaagggaa gcagtcttaa gaaaccattc gctctgccgg aattgtttca      2280
     aacctggaca tcatgcgaag gagtgccaat ctaaattttc ctgcaggtat tgcaagggtc      2340
     gccatcattc gctagtgtgc ttcagagtgg ataaggataa ttcgtctaag tctgtggcag      2400
     cacccaaatc taccaaatct atcggagcaa gagaagataa ggattctacc gaaactcctt      2460
     ctgccaattc tagtacaccc tctttgcaag tatcgaacgt ggcgacgaca gatagggtag      2520
     tagctttcgg atcggcccat agttctcagg ttctgctggc tacagcaatc gtgatcgtcg      2580
     aagacaacag tggacatcgc tacccagcac gtgctctttt agattcaggg tctgaaagca      2640
     atttcgtaac ggagagacta agtcagcgaa tgaagaccac ccgttgcaag gtggatgtca      2700
     agattcacgg gattggtcaa gtaaaggcca acgtcaagca acggatcgaa gcgactattc      2760
     gatcgcgagt atcagacttc tctcaacgca tgagttttct tgtgttgcct aaggtcacag      2820
     taaatctacc gacgtcttcg ataaacatcg cgaaatggaa catcccagat ggcattgagt      2880
     tagctgatcc atcgttcaat atgtcgatga acgtagacat ggttctagga attgaatcat      2940
     tcttcaattt cttcagaaat ggacgacaga ttttgttagg agaacaactg ccggctctca      3000
     acgaatccgt ttttggttgg gtggtatgtg gtggtgtgcc agtttccagt cagtcgttga      3060
     acatcagctg caatttgtca acttcagtag atcttgatga gttacttgcc cgattttggt      3120
     cctgtgagga agtcggatcg gatgagaaac attcaccaca agaaaaaggg tgtgaggagc      3180
     attttgtgcg tacggttcaa agaggaaggg atggccgata cacagtttcg ctaccaaaga      3240
     atgaagaagc tttggagcaa atcggcgaat cacgcaaaat tgctgttaat cgtctcttta      3300
     gcacagagcg ccgattagcg agaaacgatg atcttcgtaa tcagtactgc tctttcatgg      3360
     aagagtacct tcagctcggc catatgaata aggttgaggt agtccagatt ttacccaaac      3420
     ggtgctatct accgcaccat ccggtaatta aggaggctag tactacaacc aaggttcgcg      3480
     ttgtatttaa cgcttcgagt gaaacaacta ccagagtctc gttgaacgat gcgttaatgg      3540
     tgggtccaat aattcaagat gatctacgat caatcatcat gcgaagtaga acgaaacaga      3600
     taatgatcgc tgctgacgtt gaaaaaatgt ttcgtcaaat tcttgtgtgt gatgaagaca      3660
     ggccattgca gtctatcctt tggagatcta caccggaaga ggaaatcggt acgtatgagc      3720
     tgaacaccgt cacctatggg acaaaaccag caccattctt ggcaactagg gttcttaaac      3780
     aactttcgga tgatgaagaa gatagattcc cacttgcagc aagggcagta cgggaagata      3840
     cttatatgga cgacgtgata acaggtacgg atgaagtcga tgaggcgatt gctttgagag      3900
     cacaactgca gaatctcatg agcgctggag gttttagact tcgtaaatgg gcgtctaacc      3960
     atcggggagt attagccgga gttttagaag aggatttagc tatttccagt gcgaaggaga      4020
     tctctttaga tccagatccg tcggtgaaaa cactcggttt aacatggcag ccgggaacgg      4080
     acactctgcg cttccaattt tccatcccaa gtatggatga agcaaatccc ttgaccaagc      4140
     gcaaggtttt atcggttatt gcaactctat tcgatccgat aggccttatt ggtgctgcca      4200
     ttacgtcttt caaggtgttt atgcaattat tatggaccct caaggatgaa actggagaac      4260
     gaataggttg ggatcaaccc ctacccaaac cggtgtgtga ggcgtggcaa aactattatc      4320
     aacagctgcc gctccttaat cagatcagaa tcagcagatg tgtgataatc ccacaggcac      4380
     tgaaggtaga gcttcattgt ttttcggacg catccgagaa ggcttacggt ggatgcattt      4440
     acgttcgaag tgaggatgtc aaccgcaacg ttctagttcg cctgttcgct tctaaatcta      4500
     aggttgcgcc tttaaagagt caaaccattc ccagattaga gttatgcggt gcacttttga      4560
     ccgcagaact acatgaaagg gtcaaacaag ctatcagaat tgaagtgaaa acatatttct      4620
     ggacagattc tacatgcgtg ctacgatgga tagcagctac tccatctact tggagcacgt      4680
     acgttgggaa taggtgtgca aaaattcagc gtttgtcgga aaactgcata tggcaacatg      4740
     ttccaggaat acagaacccc gcggatctga tatcgcgggg aataacacca gaaaatattg      4800
     cggaaaacaa cttctggtgg caagggccga attggctgtt ggaagggccg gaaaactggc      4860
     cactaacact aggtctacca tcttcagaag aggttgagac agaaaagcga cgtacggtta      4920
     cggcagctac aacgatgaca tctgaggagt ttatggaagg gtacgttgcc aaattttcgt      4980
     catattctac cttgatcaga acgaccgcta tatggcaacg aacgatgaaa ctcctgagaa      5040
     caccaaagga tgatagaaag gtagcatatc tttctacaga tgatctcaaa gaagcagagc      5100
     atacaattat tcggaaggtt caaagggcaa tcatggctga cgagtggaag gccttaacct      5160
     ctaaggaatc cgtgtcgtca aaatcgcctt tacgttggct taatccatat atatcgtcag      5220
     aaggaattat ccgcgtcggc ggccgcttag aacactctgt tgaatcgaga gatgtcaaac      5280
     atccgattgt tctgccaaaa ggtcatcgac tgacccggtt gctcgtagaa cattatcata      5340
     agcgcctact tcatgccggg ccacagttat tgttaagtac cattcggctg aaatattggc      5400
     cactaggagg gagaaacatc gttcgaaagg tggtccacag ttgccacaaa tgtttccgcg      5460
     caagaccggt tacagtaaaa caatttatgg gagagctgcc tgctcagcga gttaccgtat      5520
     cccgtccgtt ttcacgaacg ggcattgatt tcttcggacc ggtttatgtt cggcctggac      5580
     ctagacgtac cgcggtgaag gcatatggag ccatctttat atgtcttgca actaaggcga      5640
     tacacataga attagtgtct gacttgtcca cggatcggtt tattcaggca cttcgacggt      5700
     tcataggtag acgaggacgg tgcgctgaaa tattctccga caatggaact aattttgttg      5760
     gagctcgaaa tcggctccga gatcttttgt taatgttgag agataaggat cacaaggcga      5820
     aaatgaacaa ttattgcctc aatgaaggca taaaatggca ctttagccct ccaagtggcc      5880
     cccattttgg aggactttgg gaggcggcag tgcgttccac taaatatcat cttcaaagag      5940
     tggtaggaga aacaccaatg tccttagagg acatgaatac gttattggtc caagtagagg      6000
     catgtttaaa ctctcgaccg attactgcgc tctcagagga tccaagcgat cttgagcccc      6060
     tcacgccagc acacttcctg ataggatcgt ctctccaatc tcttccggaa actgatgtta      6120
     ccgccatgcc attgaaccgc ttgacacaac tagaagctgt tcagagaaag ttccaagatt      6180
     tttggaaacg gtggagacag gaatatttga gccagcttca aggaagaacg aaacgctggc      6240
     gaccaccggt taagattgaa gcggggaagc tggtagtcgt ctgcgacgac aatctgcccc      6300
     ccttgcgctg gaagctgggc cggattgaac aaactcatcc tggatcggac ggtgtggtcc      6360
     gagtagtaac aatcaggaca gcttcaggaa gtttcaaacg gccagtggaa aaggtttgcc      6420
     tcttgccaga accaatcatg gaaccggaat tttagctcaa ttcaaaaaaa aaaacctcat      6480
     cccaattccc atccatatcc cattcctgcc aaggaggagt ctgtttgttt cttttcagaa      6540
     attcgatgaa tttcagggtg ggtgagaa                                         6568
//
ID   BEL-776_AA-LTR repbase;    DNA;    INV; 750 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-776_AA-I;
KW   BEL-776_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-750
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-750
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 94-94 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 750 BP; 199 A; 160 C; 181 G; 210 T; 0 other;
     tgtttgggca tctgccccta tacacgacgc tgaactactc cagactgtgc ctgcagtcgt        60
     ctggctgaag cagactatcg cattgtgtct gaccagacag acaccgctca ctacctacat       120
     cacagctgct gtccttatta ctccaaagtg gctgtgaaga ccaccagcga accatcggct       180
     ggcgaagtaa acaacaaccg gtggacaatg gtcggttaga gaagtgctct cgcactgatc       240
     acaccgatcg ttgttcgcct aagagatgat gtaacttaca tcgatcatca gagaagggag       300
     gatggttggc tagatctgat gatgatgtga gaggtttagt ttactcgaga ccaacggcgc       360
     gatcggtcac tatttgcata cgcagttcaa ttatccgcct taattttcag tacaattaat       420
     tatagaatta aataaccagt aatatagtgt ttagttgaaa tctcagtgat cctttaatca       480
     aagttcaacc cgaaactacc ggatttgctt gctaaacttg tgctcacgaa gttccatggt       540
     gtaatacggc tgttttgttg gactttctac ctttggtatt cgatgacgaa ggagtagtgc       600
     gtagttggtg cttacggacg gggtcgtgtg tgtgatagcg atatcaattt ggttcaatcc       660
     gataatcaaa attttatgag tcggctgtgg gagccttagt gagacttagg acgattctcg       720
     ccttatcgaa ggaaggttcc agaaacgaca                                        750
//
ID   BEL-777_AA-I repbase;    DNA;    INV; 6226 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-777_;
KW   BEL-777_AA-I; BEL-777_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6226
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6226
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..6224
FT                 /product="BEL-777_AA-I_1p"
FT                 /translation="MSKKSTNRGASASGSFEPRENTDNIVTNNAANNVSNV
FT                 YLNPSCSGNQGNAGITGIRRNPLREVRRFVDYQCHLCEKRDNEEMVQCDGC
FT                 DRWFHFVCVQVTEEIANVSWICPTCKTQSFIAPPNNTQHPITEQHNPLPPV
FT                 SKSVSNRSGSRTSSRSEARRLKELELKKLEEELELEKRFLERKYKLLRECG
FT                 SEASSINEEYEDDQLSKIEEWLAETERHGEAEDSGLAEAANEQTSNRSSKL
FT                 EEHKAPAVQRTSHPSILRTNQTTHRSQCDVPLFPAHQRHQSGFPSTVPDME
FT                 NNRLSQNVRYCSSMRPQFVEEHIRSEQPLTEDLSERFARLKPSVHPRTIPS
FT                 SLPGTSRHLTREVQTHHQYPQGAARPVLAPTLNPNMHNEFVPGQRSTPILL
FT                 AQAEPCVSTINDETVCILNRSQIAARQAVSRDLPDFDGSLEDWPLFFATFN
FT                 SSTQMCGFTNEENMLRLRKCLKGKALEAVKCELLHPSNVGDIISTLKMLFG
FT                 RPDAIIQSIIKKIRHLPPPNTEKLETLVNFAVNVKNMVATIQACNVGDYLF
FT                 NTSLRLELVERLPPSLKLDWARFTRSYPNPNLTDLSAWLYTIAEDASTVMA
FT                 TTCFDSRGRCTKKDGFLNLHSESDLCYEKSIEPVSALKSSVAVDYPKAKCM
FT                 VCKGSCLSVAKCSGFEELTYDSRWAIVKECKLCRKCLRKHNGTCKLMSKCG
FT                 INGCAFQHHPLLHKADNYNATPSTSTQTENPRSAETDPSCNVHQGQSTVLF
FT                 RIVPVILYGPSKTVRTYAFIDDGSELTLIEQSLADELEVQGPKKSLCLKWT
FT                 GGTRKLESDSQQINLQISGVRSSAKFDLSGINTLSSLQIRPQTFFLSEMRK
FT                 RFPYLDGLPLEEYHDVSPRLLIGLNYANLGHAVKSREGRRNEPIAVKTRLG
FT                 WMVYGNCAGEEATVGYMNYHSVQKCGCNQEDDNSLHKAMKSYFALDSMGIA
FT                 KPSQLLMSRDDQRAQMLLEALTRPTNNRYESGLLWKYDHVRLPDSRQMALR
FT                 RWKCLENRMNKDTILAEALQEKLKDHVNRGYVRKLTTDELRESHERVWYLP
FT                 IFVVVNANKPGKIRLVWDAAATVHGVSLNSVLLKGPDQLTSLLSVLIRFRE
FT                 FRVAICGDIKEMFHQVRIRKEDQQCQRFFWKDEEEAEPSVYVVQVMTFGAC
FT                 CSPSTAQHVKNSNAKLFEQDYPEAVNAIIKGHYVDDMLVSTETEGETVKLA
FT                 NEVKEIHRHAGFDIRNWISNSTVVQATLKHASTEGKNMNIGEDAAIEKVLG
FT                 MWWNTSTDHFTYKMSSRYDRDLLSGEHRPTKREVLRTLMMIFDPLGFIAHL
FT                 LMYLKVLLQEIWRTPVGWDDPIEEAQFDKWLTWLKVFPMMCTIEVPRCYRS
FT                 LTSVNAVAEIHTFVDASESGFAAVAYLRYEETDTIECALVAAKTRVAPLKF
FT                 LSIPRSELQAALLGVRLADTISASLSIKIDKRYFWTDSKDVLCWLKSDHRR
FT                 YSQFVAFRVSEILESTDISEWRWVPTKQNVADEGTKWTKIPDMSASSRWFH
FT                 GPDFLWQDKHNWPAAVCMDKPTNEELRPHLLIHATINESVINSEHFSKWTP
FT                 LLRRTAYIFRYIDNLRRCMKREQRAIGPLTQQELSKAENYLFRVAQSEIYA
FT                 DEVATLAANRTSKCPSNRIIRDDPLFRSAFVDESGVARVKGRTNACAFIDR
FT                 DAAEPIILPRQHYITHLIIANAHERFNHQNHTTIINELLQRYRIPRLKATY
FT                 NAVRRDCQYCKNQLAKPQPPVMADLPKARLSAFSPPFTYMGVDYFGPILVA
FT                 VGRHSEKRWGVLATCLTTRAIHLQIAHSLTTDSCVMAIRNIMARRGVPAVI
FT                 YSDRGTNFRAASKELKAAIEQLDHDKLKKEFTSTRSQWTFIPPLTPHMGGA
FT                 WERLIQTVKKNLNVLQPNRLPTDEVLQNAMAEVENIVNSRPLTDIPVDNDE
FT                 SEVLTPNHFLLGSANGLRSWIPFDDSPLHLKNCYQQSQRMANMFWKQWIRD
FT                 YLPTITRKTKWYTSSASIVVGDIVVIVDPKFPRNCWPKGRVIATHLSSDGQ
FT                 VRRATVQTASGIHERSAVSIAVLDVGVRTNTLQEVSSRIPGG"
XX
SQ   Sequence 6226 BP; 1821 A; 1490 C; 1461 G; 1454 T; 0 other;
     gtttacaaaa ttctgttaat atgtcgaaga agtcgacaaa tcgtggagca tctgcgtccg        60
     ggtcctttga accaagggaa aacacggaca acatcgtcac taataacgcg gcgaacaacg       120
     taagtaacgt ctacttgaac ccttcctgca gtggaaacca gggaaacgca ggtatcaccg       180
     gaatccgtag aaatccgttg cgtgaagtcc gaaggttcgt tgactatcaa tgtcacctgt       240
     gcgaaaagcg ggacaatgaa gagatggtac aatgcgacgg ttgcgatagg tggttccact       300
     tcgtatgtgt tcaagttact gaggaaattg ccaacgttag ctggatctgt ccgacctgca       360
     aaactcaatc cttcattgcc ccacccaata atacgcaaca cccgataacc gaacaacaca       420
     atccacttcc acccgtaagc aagtccgtgt cgaatcgatc gggtagcaga acaagctctc       480
     ggagtgaagc aagaagactt aaagagctgg agttgaaaaa acttgaggaa gaacttgagc       540
     tggagaagcg ttttcttgaa cgaaaatata agcttctgag agagtgcggt agcgaggcgt       600
     cgtccataaa cgaggaatac gaagacgacc agttgtcgaa gatcgaagag tggttagccg       660
     aaacggaacg ccatggtgaa gctgaagatt ccggattagc agaagcagca aatgagcaaa       720
     catcgaacag atcgagcaag ctcgaggagc acaaggctcc ggctgtccag cgaacgtctc       780
     atccatcaat tcttcgaaca aaccaaacga ctcaccgttc tcagtgcgat gtacccctgt       840
     tccccgcaca tcaacgccat caatcaggtt ttcccagtac ggttccagac atggaaaaca       900
     accgtctctc acaaaatgtt cggtactgta gcagtatgag gccgcagttc gtcgaagaac       960
     atattcggag cgagcagcct ctaacagaag acttatcgga gcggtttgct cgcctaaagc      1020
     cctccgtcca tccaagaacg attccatcct cactaccggg aactagccga catctaacta      1080
     gagaagtcca aacacatcat caatacccac aaggtgctgc caggccagtg ttagcaccta      1140
     ctttgaatcc gaatatgcac aacgagttcg ttccgggtca gcgttcaacg ccgatattac      1200
     tagctcaggc cgagccttgt gtgtcaacca tcaacgacga aacagtttgc attctcaatc      1260
     ggagtcaaat tgcagctcga caggcagtgt ctagagatct accagatttc gatggatcgt      1320
     tggaggactg gccgctattc ttcgccacat tcaactcgtc tacgcagatg tgtggattta      1380
     cgaacgaaga aaacatgctt cgattacgta aatgtctgaa aggtaaggca ctggaggcgg      1440
     tcaaatgtga gttgctccat ccatcaaatg ttggcgacat tatttcaact ttgaagatgc      1500
     ttttcggtcg tccagatgcc atcatacagt caatcattaa aaagatcaga catcttcccc      1560
     caccgaatac ggagaagctc gagactttag tgaacttcgc cgtgaacgtt aaaaatatgg      1620
     ttgcgacaat tcaagcttgt aacgttgggg actatctttt taacacgtct ctccgtttag      1680
     agttggtaga acgtttacct ccgtctctga agctagattg ggcgaggttc actagaagct      1740
     atccaaaccc gaatctaacg gatctgagtg cctggctgta taccatagca gaagatgcca      1800
     gtacggtaat ggctacgaca tgcttcgatt ctcggggccg atgtaccaag aaagatggat      1860
     tcctaaattt gcactcggaa tcggacttat gctacgagaa atcgatcgaa cctgtgagtg      1920
     cattgaagtc gtccgtagct gtagactatc ccaaagctaa gtgcatggtg tgtaagggaa      1980
     gctgcttatc tgttgcaaag tgtagcgggt tcgaggaact cacctacgat tcgagatggg      2040
     caatagtgaa ggaatgtaag ctttgccgta aatgccttcg caagcacaac ggtacatgca      2100
     agctgatgtc aaagtgtggt ataaatggat gcgcttttca acaccatcct ctactccata      2160
     aagccgataa ctacaacgcc acgccatcaa cgtcaacgca gactgaaaat ccgagatccg      2220
     cagaaaccga tccaagctgt aacgtgcatc aggggcaatc tacagtactg tttcgcatcg      2280
     ttccagtcat cttatacggg ccttctaaaa ccgtacgtac gtatgcgttc attgatgatg      2340
     gatccgagct cacacttata gagcaaagtc ttgccgatga actggaagtc caagggccga      2400
     aaaagtcgtt gtgtctgaaa tggactggcg gaactcgcaa actagagagc gactcacagc      2460
     agataaacct tcaaatatcc ggagtccgaa gttcagcgaa gtttgacctg tcgggaatca      2520
     atacactgtc gtcgttacaa atccgcccac aaacattttt cctctcagag atgcggaaaa      2580
     ggtttcccta tctcgatgga ctaccactcg aagaatacca cgatgtgagt ccacgactcc      2640
     ttatcggttt aaattatgcc aaccttggac atgcagtgaa aagccgagaa ggacgcagga      2700
     atgaacctat agctgtaaaa acccgcttgg ggtggatggt ctacggcaac tgcgccggtg      2760
     aagaggctac agtcggatac atgaattacc acagtgttca aaaatgtggc tgcaatcagg      2820
     aagacgacaa cagtctacac aaagcgatga aatcctactt tgcattggat agtatgggga      2880
     ttgcaaagcc aagtcaactt ctcatgtctc gagatgatca gcgggcacaa atgttgttag      2940
     aagctctcac ccgtcctacg aacaaccgct acgagtccgg tctactgtgg aaatatgacc      3000
     atgtccgact ccctgatagt aggcaaatgg cattaaggcg atggaaatgc ttagaaaatc      3060
     gaatgaataa agatacaata ctggccgaag ctctccagga gaagctcaag gatcacgtga      3120
     acagaggcta cgtcagaaaa ctgacgacag acgaactccg cgagtcacac gaaagagttt      3180
     ggtatcttcc cattttcgtg gtggttaacg ctaacaaacc aggcaaaata cggttagtgt      3240
     gggatgcagc tgcaactgtc catggtgtgt ccttaaattc agttctgttg aaaggtccgg      3300
     atcaactgac atctcttcta tctgttctga ttcgtttccg cgagtttcgg gtggcaatat      3360
     gcggtgatat taaagaaatg tttcaccagg tacgaatacg gaaagaagac caacaatgtc      3420
     aacgcttctt ctggaaagat gaagaagaag ccgaacccag cgtatatgtc gttcaggtca      3480
     tgacttttgg cgcctgttgc tcgccaagca ctgcacagca cgttaagaac agtaacgcca      3540
     aactgttcga gcaagattat ccagaagctg ttaatgcgat catcaaggga cactacgtcg      3600
     atgacatgct cgtaagcacg gagacagaag gagagacagt gaaactggca aacgaagtga      3660
     aagagattca cagacatgcc gggttcgaca tcagaaactg gatatccaat tcgaccgtag      3720
     tccaagcgac gctgaagcat gcttccacgg aggggaagaa catgaacatc ggtgaagatg      3780
     cagccattga aaaagtgctc ggaatgtggt ggaatacgtc gaccgatcat ttcacctaca      3840
     agatgtcttc tcgatacgac agagatctgt tgtccggtga acatcgacca acgaaacgag      3900
     aagttcttcg gacgctgatg atgatattcg accctttagg ttttattgcg catttactga      3960
     tgtacctcaa agtacttcta caagagattt ggcggacacc ggtcggatgg gacgatccta      4020
     tagaagaggc acagttcgat aagtggttaa cttggttgaa agtcttccct atgatgtgta      4080
     caatcgaagt tcctcgatgc tatcgatcgt tgacatcagt aaacgctgta gcagaaattc      4140
     acacatttgt cgacgctagt gaaagcggat ttgcagcggt agcctatctg cgatacgagg      4200
     aaacagatac gatcgaatgc gctctagttg cagcaaaaac tagagttgct ccactcaaat      4260
     tcctgtctat cccgcggtca gaactacaag ctgctctact cggagttcgt ttagcagata      4320
     ctatatcagc atccctttcg ataaagattg acaagcgata tttttggaca gattccaagg      4380
     acgtactctg ttggctgaaa tccgatcacc gccgatacag ccaatttgta gcgttccgtg      4440
     tcagtgaaat tttggaatct acagacatca gcgagtggcg atgggttccg acaaagcaaa      4500
     atgttgctga tgaaggaaca aagtggacga aaatccctga tatgtccgct agcagtcgtt      4560
     ggttccatgg accagacttc ctatggcaag ataaacacaa ctggcccgct gctgtttgca      4620
     tggacaaacc tacgaacgaa gaacttcgtc ctcacttgct cattcatgca accatcaacg      4680
     aatcagtgat taactctgaa catttttcta agtggacacc tctacttcgt cgaaccgcat      4740
     acatctttcg ttatatcgac aacctgaggc ggtgcatgaa aagagaacaa cgcgctattg      4800
     gaccactaac acaacaagaa ttatctaaag cagagaatta tctatttcgc gttgcacaat      4860
     cagaaatata cgccgatgaa gtcgcaacgt tagccgcaaa ccgtacgtcg aagtgcccat      4920
     caaatcggat aatacgagac gatcctcttt tccgcagtgc gtttgttgat gaatctggag      4980
     ttgcacgtgt caaaggtcga acaaacgcat gtgcgtttat cgatcgcgat gctgccgaac      5040
     ccattatact tcctcgtcaa cattatataa cgcacctgat catagcgaac gcccacgaac      5100
     gtttcaacca tcaaaaccat acgacgatta tcaacgagct actacagcgt taccgcattc      5160
     ctcgacttaa agcaacgtat aacgctgtgc ggcgtgattg ccagtattgc aaaaatcaac      5220
     tcgccaagcc gcaaccacca gtgatggccg atctacctaa agcacgatta tcagcgttta      5280
     gtccaccatt cacctatatg ggggtagatt acttcggccc aatcctagtg gcagtaggcc      5340
     gacactctga aaaacggtgg ggtgtcctcg ctacatgttt aaccacacgc gctatccatt      5400
     tgcaaatcgc tcatagccta acaaccgact cttgtgtcat ggcaatccgc aacatcatgg      5460
     ctaggagggg tgtaccggcg gttatataca gcgatcgagg aactaacttt agagctgcca      5520
     gtaaagaatt gaaggcagct attgagcaac tcgatcacga caagctgaag aaggagttca      5580
     cttcaactcg ctcccagtgg actttcattc caccgttaac accgcacatg ggcggagcgt      5640
     gggagcgcct aatccaaact gttaagaaga accttaatgt acttcaaccc aataggctgc      5700
     ctaccgacga ggtgctgcag aatgcgatgg cagaggtcga aaacattgtt aactctcgac      5760
     cgctgaccga cattccagtc gacaatgatg aatctgaagt acttacaccc aatcattttc      5820
     tgctgggatc tgctaacgga ttgagatcgt ggattccatt tgatgacagc ccgttacact      5880
     tgaagaactg ctatcaacaa tcccagcgca tggcgaatat gttctggaag caatggattc      5940
     gagactatct gcccaccata acccggaaaa ccaaatggta tacatcatct gcttcaatcg      6000
     tcgttggaga catcgtggta atcgtcgatc cgaaatttcc tcgaaattgt tggcccaaag      6060
     gaagagtgat tgctacacat ttgtcttccg atgggcaagt acgtcgtgca actgtccaga      6120
     ctgcatctgg aatccacgag cgatctgctg tgtccatagc tgtactcgac gtaggcgtaa      6180
     ggacgaatac gctccaggag gtgtcctcgc gcattccggg ggggag                     6226
//
ID   BEL-777_AA-LTR repbase;    DNA;    INV; 642 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-777_AA-I;
KW   BEL-777_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-642
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-642
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 163-163 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 642 BP; 215 A; 129 C; 116 G; 182 T; 0 other;
     tgttgactac gccccgtcga catctaacgc agtgcagact ctacctgaaa caatgcacgc        60
     cacacccagc gctggacaag ggattgagta ggcatctaaa gtaaacaaca acatacgtat       120
     tggattttcc tagagcttga attcgctgca tttgaggcaa ttatcctaat taagtttcca       180
     aaaaaaaata cgttttcctc tttcatcata tctaatattc ctcctaaatt cacgtagtaa       240
     ggtgagagaa gattaaatta catatatgta cgtagaagta atatcatgta taaattgttg       300
     cataggttag ttgtttgtgg ctcactcagg gttgctctat ctccgagaca gtcagtaagc       360
     taaaactaca taaatagcga gtagtaaggg taagaattat tacaccaaca tacccaacat       420
     aaaatagcta taacctgtat gtactgttca caccaggggt gctcaaacga aaacgaatcg       480
     aaactagttg cgcgagaaga gaactaccga attgatcact aacagtaagt aatattgagt       540
     ccactgaatt tcctttgtta atgcttccat ttcgccagga attttgtaat ttactgaaat       600
     aaatttacgg aattacgatc acagttcttc gactgcgcaa ca                          642
//
ID   BEL-778_AA-I repbase;    DNA;    INV; 6174 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-778_;
KW   BEL-778_AA-I; BEL-778_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6174
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6174
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 247-247 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..6171
FT                 /product="BEL-778_AA-I_1p"
FT                 /translation="MSESETPRVVVPKPRRDILSALSDDIDGNQIPTIAQQ
FT                 KIAKQAAEERRVMEQKVELLIDRRSALIAKLLRINESAQQEDVNIHLLRLH
FT                 LDTLRRCSDENEKIFSELSVIIPKENREEHHQEYVKVERMHDQLYVVLQTK
FT                 IARLGEVDSKSSNAVAPIVPQPVYIQAPAPQLHAPFPRFNGDPVNWYSFKS
FT                 LFQSIMSKYPQETPAMKILHLRNSLDGDAKDKIDQEVINSNDYSLAWNILE
FT                 NAYEDKRLIMDTHIDAILDIPKVTKENRGKSITKLVDICIKHTEALSGHGY
FT                 KVEGLAELILVNVLYKKLDRETQEQWELALGSGDLPEFSDFMDFLRERGRV
FT                 LVRTSHPQHQGPQQAVGQSKQRPTFSQRPTAQNVSKSFVQTTKEICPCCKA
FT                 DHSIYRCPKFQNQSTSDRKSVVVKSNLCYNCLKGNHRVSDCPSEHTCKVQG
FT                 CGRKHHSLLHPSTNAEGPTNSAKNAESKEAQHSTPKERSQLESVSVPESSS
FT                 ANTLCGRTVAVKKHVLLSTAEVFVVGNGGCIIKSRALLDSGSDSHIITERL
FT                 ASQLKLKLERVDLPINGLNDLQTNVKHLVSTTIHSRFGTDPQYKLDFLVVP
FT                 RVTSSIPAVEVDVSSLSLPSTLPLADPSFHNPGDIDLILGNEIFFDLVKAG
FT                 RVKLGNSSAVLVETELGWVVGGSVHNRSVKQLSRVCHFNHFEEELNHTLSK
FT                 FWEVESVPSNGLLTKSEIAVEQHFCRTCTRDEQGRYQVRLPFNDLKDKLGD
FT                 SYELAKQRFDRLKVSLNKNPNKRKQYEEFMAEYIELGHMKEVDNVDGQGYY
FT                 IPHHAVYKATSSTTKTRVVFDASAKSTTGISLNDTLSVGPTVQSDLLTIIL
FT                 RFCTHEVVLTADIPKMYRQIRMCPEDCRFQRILWWNADGEERTFELQTVTY
FT                 GVASSPHHATRALMQLTKDEGQEYPLAAAVIEEDSYIDDFLTGGESVEAVV
FT                 DIYQQLSALLAKGGFGVHKFCSNSPKVLSAIPEHLREKQVSFEESGVNNII
FT                 KALGLIWNPTDDYFGFHVQQPEHRISVTKRAVLSDIGRLFDPLGFLGPIVT
FT                 LAKLLMQDIWRLGLGWDEVLPDELLQSWRSFQEQLTSVNQIQKRRLVIPGN
FT                 STRVELHGYSDASMCAYGAVLYIRSIAKDGTVTVNLVASKSRVAPLKSLTI
FT                 PRLELCGARLLVELTQKVISALNVQFDEVKFWCDSQIVLCWLKKSPAALNV
FT                 FVANRVAAILETTDVKQWNYVRSESNPADVISRGEYPENLSENKLWWNGSP
FT                 LLWQPYVEAAVLDPLDETALPELKQAKCLTTSVAQPNVLLNRISHYRKLLR
FT                 AWVYVRRFLTARCNRPLTTPITADEMFVAEHTVLRLLQEEVFGDLLHILQQ
FT                 TPIKRHNLSNLAPFMAEDGLIRVGGRLKYSAIPYDGKHQVLLPEKHHVTVI
FT                 LIRRLHEDHAHVGPNGLLAIVRERYWPLRAKAVIKKIVSSCQLCAKHRPIL
FT                 GSQLMGNLPEPRVNPAPVFSKVGVDYAGPFMLRMSLRSPKTYKAYVLVFIC
FT                 MAVKAIHMELVSSLTTENFIAALHRFASRRGLPSDVFSDNGTSFVGANHEL
FT                 AALRDLFEDEQHQRKLAEFCSAKGIRWHFIPPRSPHFGGVWEAGVKSMKFH
FT                 FKRVVGETRLTYEEMITFLAQTEGILNSRPLCPLSDDPNDTAILSPSHFLI
FT                 GRSAVALPEPSYTDEKVGRLSRYQHLQQMMQHFWGRWSSEYLHHLQTRQKW
FT                 HTGGIKIYEIGALVLLLDENLPPQQWRRGRIIAVHPGRDGVVRVVTVKTVS
FT                 GEFKRSVTKIAVLPSVESDDSTGG"
XX
SQ   Sequence 6174 BP; 1711 A; 1375 C; 1566 G; 1522 T; 0 other;
     ttttttggtc cgtttcgacc ggatttctgg aattggagtt tcgtcgtgcc gtttcggtta        60
     atttccgctc gtgatcgatt ccgcgtcaaa tttcgcgttt gacgttggat ttcagtgatt       120
     agatcgcagc cgtgatgcga atctgaagaa tcgccatttt ggttgattgt gtcgatgtga       180
     tagcgttcgg tgcagcaccg aaccggaagt gtgaactgtg aagtgttgga ttacgcggcc       240
     attcggcgat cgtgtccgtg gcacgaacaa atcgccacca ttttggcgaa aggaagtatt       300
     ccaataccgc ttggctagaa ttagcgaaga attgcgactc actactacag tgaaagtgat       360
     tacgtgtccg tgacacatgt gttagtgatt gccaccgggg caagaaaacg ctcccacagc       420
     tagtgttgga aaccgtgttt ccaagtgtgt gtgtgaacag aggctgttct tcgccatgcg       480
     aagcctacag caatgacata agcatacccg accgactgga aaactgtgta cagcaattct       540
     cgccaagcga gtgagacgca caacggtgtg tgtgaattag ccccagcggc tgaaaatggg       600
     aaggcagtct cgccatgcga gctgtgtgtg tgaacttttc catcaagtga ttgcacaatg       660
     atgtgcgtgc ctcagcggca aaattgaatt gtggtcaagc cacgaagaaa acacaagtga       720
     gatagcgaat gatgaaaaag tgagaagctg tgcgtgtgag cagcaatcga atttaaaaac       780
     aactgaatgt cggagtccga gacgccgcga gtggtggttc caaaaccacg aagagatatt       840
     ttgagtgctt tgtcggatga tatcgatggg aatcagattc ctacgattgc ccagcagaaa       900
     atcgcgaagc aagctgccga agaaagaaga gttatggagc aaaaagtgga attattgatc       960
     gatcggcgaa gtgcactgat cgcaaagctg ctacgcatca acgaaagtgc gcagcaggaa      1020
     gatgttaaca ttcaccttct ccggttgcat ttggatacgt tgcgtaggtg ttcagatgaa      1080
     aatgagaaaa tattttccga attgtccgtg atcattccga aggagaatcg tgaagagcat      1140
     catcaggaat atgtgaaggt ggaaagaatg cacgatcagt tgtacgtggt gttgcaaacg      1200
     aagatagcaa ggcttggtga agtggattca aagtcatcta atgcagtagc gccaattgtc      1260
     cctcagccgg tttatattca agctccagct ccacaactac atgccccgtt ccctcggttc      1320
     aatggggatc ctgtgaattg gtacagcttc aaaagcctat tccaaagcat aatgagtaag      1380
     tacccacagg aaactcctgc aatgaaaatt ttgcatctga ggaattcact ggacggcgat      1440
     gcaaaagata aaattgatca ggaggtcatc aatagtaatg actacagcct agcctggaac      1500
     atactggaaa acgcctacga agataagcgt ttgattatgg atacgcatat tgatgcaatc      1560
     cttgacatcc ccaaggtaac caaggaaaac cgaggtaagt cgatcactaa acttgttgat      1620
     atttgcatca aacacacgga agctctaagc ggccatggat acaaagtcga gggattggct      1680
     gagctgattc tcgtcaacgt tttgtataag aagttggata gggagaccca agagcagtgg      1740
     gaattagcat taggatcagg agacttacca gagtttagtg acttcatgga tttccttagg      1800
     gaacggggac gggtattggt gcggactagt caccctcaac accaagggcc tcagcaagca      1860
     gtaggccagt ccaagcaacg gccaactttc agtcagcggc caactgcgca aaatgtctcc      1920
     aagtctttcg tccagactac gaaggaaata tgtccttgtt gtaaggccga tcattccatc      1980
     taccgttgtc ccaagtttca aaaccaatcc acctctgatc gcaagtctgt agttgtcaaa      2040
     tcgaatttgt gctacaattg cttgaaggga aatcatcgag tcagcgattg tccttcagaa      2100
     cacacctgca aggtccaagg ctgtggccgc aaacatcata gtttgttgca ccccagcaca      2160
     aatgcggaag gtccaacgaa ttcagcgaag aatgcagaat cgaaggaagc tcaacattca      2220
     acgccgaagg agcggtcgca gcttgaaagt gtcagtgttc cagagtcttc gagtgcaaat      2280
     acgttgtgcg gtcgtacagt agcagtcaag aaacacgtgt tgctgtctac agcggaagtc      2340
     tttgtggtgg gcaatggagg ttgtatcatc aaatcgcggg cattgttaga ttctggatct      2400
     gacagccata ttattacgga aaggttggcg agtcaactga agctgaagtt ggaaagagtc      2460
     gatcttccaa tcaacggatt aaacgatctt caaactaatg tgaaacatct ggtgtctacc      2520
     acgatacact ctcggtttgg cacggaccca cagtataaat tagatttttt ggtggttcct      2580
     cgggtcacgt ccagcatacc cgcagtcgag gtggatgttt catccctgtc cctgccatcc      2640
     actctgccat tagctgaccc ttcttttcac aatccgggag acatcgatct aattctcgga      2700
     aacgaaatat ttttcgacct cgtcaaggca ggtcgagtaa aactaggaaa tagctctgcg      2760
     gtattggtag agactgagtt gggatgggtg gtaggaggtt cagtccataa tcgaagcgtc      2820
     aaacaacttt cacgtgtgtg tcatttcaat cactttgagg aggaactcaa tcacacacta      2880
     tcgaaatttt gggaagtcga gtccgttcca tcaaatggtc tgcttaccaa atcggaaatt      2940
     gctgtggaac aacatttctg tcggacatgt acgcgtgacg agcaaggtcg ttatcaagtt      3000
     cgactccctt tcaacgatct taaggataaa cttggtgact cctacgagct tgccaagcaa      3060
     cgtttcgata gactgaaggt ttcgttgaac aagaacccga acaagcgcaa gcagtatgaa      3120
     gagtttatgg ccgaatatat agaactagga cacatgaagg aagtggataa tgttgatgga      3180
     caaggttact atattccaca tcatgctgtc tacaaggcaa cgagttctac aacgaagacc      3240
     cgcgttgtct ttgacgcgtc agcgaaatca acaaccggta tctcccttaa tgacacactg      3300
     tcagttggtc ctactgtaca gagtgatttg ctgacgatta ttttgcgctt ctgtacacac      3360
     gaggtggttc ttacggcgga catccccaag atgtaccgtc agatccgaat gtgcccggaa      3420
     gactgtcgct tccaaaggat tttgtggtgg aatgccgatg gagaagaacg aactttcgag      3480
     cttcaaacgg tgacatatgg tgtcgcaagc tcaccccatc acgctacgcg agcactcatg      3540
     caattgacaa aggacgaagg acaggagtac cctttggctg cggcggttat agaggaagac      3600
     agttacatcg atgacttcct taccggaggg gagtccgtcg aagcagttgt cgacatctat      3660
     cagcaactat cagcgttatt agcgaaaggt ggatttggag tacataagtt ttgctcgaac      3720
     agtcctaaag tactgagtgc gattccggaa cacctacgcg agaaacaagt cagcttcgag      3780
     gagtcaggag tgaacaacat tattaaagca ttgggactca tttggaaccc aacggatgac      3840
     tattttgggt ttcatgtgca gcaaccggaa cacaggattt cggttacgaa gcgcgccgtc      3900
     ttgtcggaca ttggccgttt gttcgaccca ctcgggttcc ttggcccaat cgtcaccttg      3960
     gccaagttac tcatgcaaga tatatggcgt ctcggtttag gctgggatga ggttcttccc      4020
     gacgagctgc tgcagagctg gaggagcttc caggaacaac taacgtctgt caatcagatc      4080
     cagaagcgac gactggtgat accaggaaac tcgacaagag ttgaattaca cggttactcg      4140
     gatgcatcga tgtgtgcata tggagccgta ctgtacatca gaagcattgc caaggacgga      4200
     acagtaactg tcaaccttgt tgccagtaaa tcacgggtag caccactgaa atccttaacg      4260
     atcccgagat tggaactctg cggtgcccgg ctactcgtgg agttaacaca aaaggtgata      4320
     tcagcattga atgtgcagtt cgacgaggtg aaattttggt gtgactctca gattgtgtta      4380
     tgctggctta agaagtctcc ggcagcgttg aacgtgtttg ttgctaaccg tgtggcagca      4440
     attttggaaa caaccgatgt caagcagtgg aattatgttc ggtcagagag caatccagcc      4500
     gacgttatat ccagaggaga gtatccagag aatctgtcgg agaataagct ttggtggaat      4560
     gggtcacctt tgctgtggca accgtatgtg gaagctgccg tactcgaccc tttggatgaa      4620
     acagcgttac cagaactgaa acaagcaaag tgtttgacaa cttctgtggc acaacctaat      4680
     gtactgttga acagaataag ccactaccgc aagctgctca gagcatgggt gtatgtgcga      4740
     cgctttctaa ctgcaaggtg caatcgtcca ctaaccacac cgataacggc tgatgaaatg      4800
     ttcgttgcag agcacacagt tctacggtta ctgcaggaag aagtcttcgg cgatcttctg      4860
     cacattcttc aacaaacgcc catcaaacgc cataatctca gcaaccttgc accgtttatg      4920
     gcagaggacg gattgatacg agttggaggg cggcttaagt attccgctat cccatatgat      4980
     ggaaaacatc aagtgctact gcccgagaaa caccacgtaa cagttattct catcagacga      5040
     cttcacgaag atcatgctca cgttggtcct aatggtctgt tagctatcgt acgagaacgc      5100
     tattggccat tgcgtgcaaa ggcagtgatt aagaaaatcg tatcatcgtg tcaactttgt      5160
     gccaagcacc gtccaattct cggcagtcaa ctcatgggta atttgccaga accacgcgtc      5220
     aatccagcgc cagtcttttc taaggtaggc gttgactatg caggaccatt catgctgaga      5280
     atgagcctca gaagtccgaa gacatataag gcatatgtac tagttttcat ctgtatggca      5340
     gttaaggcaa ttcacatgga gctggtgtca agcttaacaa ctgaaaattt catcgccgct      5400
     ttacaccgtt ttgccagccg tcgtggattg cccagtgatg tgttttcgga caacgggaca      5460
     tcattcgtgg gagccaacca cgaattagca gcgttacgag accttttcga ggatgaacaa      5520
     catcaacgga agttggccga gttctgttcg gccaagggca tacgttggca tttcataccc      5580
     ccacgtagcc cacacttcgg gggagtgtgg gaagctggcg taaaatctat gaaatttcat      5640
     ttcaaacgag tcgtcggcga aacacgttta acatatgagg agatgatcac gtttttggca      5700
     caaactgaag gcatattgaa ctctcgccca ctgtgcccct tgtcagatga tccgaatgat      5760
     actgctatat tatcaccatc gcatttcctc attggccggt cagcggtggc tcttccggag      5820
     ccctcataca ccgacgagaa ggtaggaaga ctcagtagat accaacacct tcagcagatg      5880
     atgcagcatt tttggggaag atggtcctcc gagtatcttc accacctaca gaccaggcag      5940
     aagtggcata ccggaggcat caaaatttac gagatcggtg ctctggtgtt gttacttgac      6000
     gaaaatctac cacctcaaca gtggcgacgc ggtcgcatca ttgcggttca tccaggtaga      6060
     gatggtgtag tacgagtagt caccgtgaag actgtatcag gcgaattcaa acgatcggtg      6120
     acaaaaattg cagtgctgcc ttcggttgag tctgacgatt caacgggggg agaa            6174
//
ID   BEL-778_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-778_AA-I;
KW   BEL-778_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-225
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 95-95 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 225 BP; 73 A; 39 C; 41 G; 72 T; 0 other;
     tgaatgattt gatttgtttt tgaacacctg aggataatat taaaataaat cactgttatt        60
     agtatcaaca tttgcctcag tgtagtaagg taaaataatc ttggcaccac tgtatcgaga       120
     aaaagtcagt taataaaaaa gcattgttca cgacggtcac gtttcatttt cggtccgaag       180
     taaaaactcc attcctccgc gttttgagct atcgttgagc agaca                       225
//
ID   BEL-779_AA-I repbase;    DNA;    INV; 6740 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-779_;
KW   BEL-779_AA-I; BEL-779_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6740
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6740
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 156-156 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6740 BP; 1841 A; 1580 C; 1740 G; 1552 T; 27 other;
     ttggtccttc gagccggatt catcggaagg atagkgatmw csaaaacgcc attacacact        60
     tcccgaaagg tacgttggcg ccatagacca gaatcgccat cataaaacas caataatmtt       120
     ggacaaaagt gcactcaccg ttttggagaa gaagattttg cgagcgacca tcccaccatt       180
     cagtttcttc aaccacaacg cagccggacc atcaaattcc aattggaaat cgcaacttcg       240
     atcaccattc tgttgtgata ccaacaccgt ggaaaggttc aaccaggcta attgccttgg       300
     ttcatccagg taattgaaca cttataacgt atatgtcctg ccgttgctgg accactttcg       360
     gtatctacaa cattattctc gtctttcatc acaacaaatc accactgcac taccggcaaa       420
     ctgtgagccg acgggaatga atgagacgaa accaaaacaa acacgacgac gatcagctgc       480
     tgattcatta ccccgtgttc gaatcgaccg taattaaatt cgattccacc cgaaattcat       540
     cgcactttca acccaattca accgggattt ctgttgattc accatataaa cactatcacc       600
     gatcgagagg gggaattgct tgcacttttt tcaccggtaa acgcgccgat caaagcagcc       660
     aaaacaccac cgacgagaac taaaccgaga ctgtcgtttt ctactgatcc cgacggcaaa       720
     cgtgtggact ggactggacg gagagcaata aaatcaacac caccaacggc gttcaacaca       780
     gcgcgcgacc ggaccattgg tgacgacgaa ctgcttgttt gtacaggtca gtgtttttgt       840
     attacaccaa tgtatatgtc ttgtcgaagc gggagtagat agcwtactac aaacataaaa       900
     ttttctctcg tgactgtgga tgtgtccaac atattttcgt ggaagcataa ccgaggggcc       960
     cgctgatgcg attttcgatt gatgttttca ctattgcgga aawacagttt tgtgaaccgt      1020
     gatattccgg cacactgtta tttggatcat ttgaagcgca catactggtt tctcaggtta      1080
     gttagaacag tatatgcctt gccgaagttg gacaccacag attactacat aattgcttct      1140
     actttcgtgt gatatttctg gacgtttgag ggatctgtcg atacaagtct ccaaccaaat      1200
     aaattaccaa ccggttagga tctgcttgag gtgcatacct gtagagaggg tacaaaatcc      1260
     tgtttttcca ggtaaatata gaacagctct acagtgtatg tctagccgaa gctaggaatt      1320
     agcagaatat tacacctacg ttttttgtat tcgaaccctc tgtccaagcg cgagtgtgaa      1380
     gatgccggcg acgacgtcca ccgctaagaa aactccagcc atgaggaccc tgaagacaac      1440
     gctgcggtcg ctcctcaaca tgtttcagga catttgtggg tttgtcgata agttgagtgt      1500
     agtgacaagt gcgagtcagg tgacggtgcg actagagaaa ttagatgaat tgtgggagaa      1560
     ggtgaacgat gtgatcctgg acatcgagac ccacgaggac ttcaccgagg aggacgagat      1620
     ctacaccacg cagcgmtccg agttcggcag caagtattat gatatgaagt cactgctgct      1680
     ggacaaaata aaggaactkg aggaaccccc agctttaaac caatccattc gcagtctgga      1740
     tacatcgcaa cagccgacca tggagcacgt gcgattgccg caaatcaagt tgcagacttt      1800
     cgacggcaac attgacgagt ggctgagctt ccgcgacttg tatacgtcgc tcatacactg      1860
     gaaggccgac ttaccagatg tggagaaatt ccattatctg aaagggtgct tggcaggcga      1920
     agcaaaggct ctggtggacc cactggcaat aacaagggcc aactatcaga tcgcatggga      1980
     cacactcacc aagcgataca acgacagcaa gcagttgaag cggaggcagg tgcaagcact      2040
     cttcaagctc ccgaagctga ctaaggagtc ggctcccgat ttgcaatccc tgctggaagg      2100
     atttgaacga acgattcaaa ccttggatca gttagttcaa cccgccgatt acaaggatct      2160
     actgcttatg gacatcctgt gcgctcgcct agatccagcc acaaggagga gctgggagga      2220
     attttcatcg acgaaggagc aggacagcgt caaggatctg accgaattcc tccaacgtag      2280
     agtcaaggtt ctgggatccc tacctacgaa atcgtctgag ttgaagccag agcttccagt      2340
     gttgaagagg aaaccatcca acctacactc cagctacaat acagttcagt caacagtggg      2400
     acgctgtgta gcatgctcgg aaacccacct gctttaccaa tgcccgactt tccaacagat      2460
     gtccacaacc gaccgcgaca aggtgttgcg aaacaacgct ctctgcagga actgttttag      2520
     gcgcggacat cgagcgatkg attgtccctc tcgttttgtg tgtcggaact gcaggggcaa      2580
     acaccacact ttggtttgtt tccgaccgtc ttccaatgag aacaggaatg gatccccgat      2640
     cgagcgaact gcagcagtgg gcagcagtac ccaatcacca gggaggtcga agattcccca      2700
     aggaacacct accctggtat cctccaacgt atccwgcaac cgtacatcgt cggtgcttct      2760
     agcgacagct atcgttttag tggaaggtga ggatggaact cwagttccgg ccagagcact      2820
     tctggawtcc ggatcagagt gcaacttcat gacggatcgc ttctcgcaac agttgagggt      2880
     tcaacggcaa cgatcwgakg tttcggtgtt tggaatcggg caagccagca cgaaggtgaa      2940
     gcagaaggtc gcagttacaa taagatcgag gaattccgga ttctcgagaa ggatggagtt      3000
     cctgttactg ccaagggtga cagcgaatct kccaatagcc aatgtggaca tggctggatg      3060
     ggaaatcccg gccggcgtgg aattggcaga cccagccttt ttcacatcca agactgtcga      3120
     cttagtgcta ggaatccagc actttttcac ctttttcaat accggaaatg aagtcctgct      3180
     aggagaaggt ctacccactc tgaatgagtc ggtgtttgga tgggtagtgt ccggatgtgt      3240
     ggacggatca cacgaaaacc atcgcataac atgcaatatg gcgattggwt tggaggagct      3300
     actgacmaga ttttggtcct gcgaagagat cgattcaccc aataattatt ccccggatga      3360
     agtgcgctgt gagkaacagt atgttcaatc ggttcgaaga ggttcggacg gtcgatacgt      3420
     agtcgcacta ccaaaggatg aagccgtttt tggaaggctt ggcgagtcaa gggatatcgc      3480
     ttaccgacgg tttcaaagcc tggaacgtag attactgaag gatkcagcgc tgcgtaacca      3540
     atacaaccag tttatggagg aatacctaga gctaggtcat atgcgcaagg tggatgcgta      3600
     ttcggaaggg cacaacaaga ctcgttgtta cctaccscat catccagtag tgaaggagga      3660
     aagcaccacg ackaaggttc gagtggtgtt tgacgcgtcg tgtaaaacgt caacagggac      3720
     gtcgcttaac gatacgttac tggcgggacc ggttattcag gatgatcttc ggtcaataat      3780
     cctacggagc cgaacaaggc agatcatggt gattgcggac gtcgagaaga tgttccggca      3840
     aattggaata agagaggaag acgcatcact tcaaagcatc ctatggcgca cggatcccag      3900
     tgaagaaatt agtacatatg agttgacgac ggtcacgtac ggtacaaaac ctgccccatt      3960
     cctcgctacc aggacactga agcagcttgc tttggatgag caagccgact acccaatagc      4020
     ggcgagaccg caacggagga cgtctacatg gacgacgttc taagtggtgc ggacaatccg      4080
     gaagcagcat tggagctgcg aacccagcta gacgagatga cccgaaaagg cggattccgg      4140
     ctgaggaaat gggcttccaa ttgtccattg gtattgcagg gtataccaga agaagatctc      4200
     gctgtagtga gaaaagaagg agtccaacta gatcccgatc cagcggtgcg aaccctagga      4260
     ctagtgtggc atccgacggc agatgtcttg aaattccggt tcaagatacc cgaaattggc      4320
     acggtggaga aattgacgaa gcgaagagtc ttgtcgatca tcgcgacgct ctttgaccct      4380
     ctgggtctga ttggaccggt aataacgaca gcgaaggtat ttatgcagct attatggtgt      4440
     ttggaagacg ataaagggaa gaagttggat tgggaccacc cactaccacc agtggtcgac      4500
     accgaatggc gaagtttcca cgcgcagctg cctcagctaa acaagttagc gattgaaaga      4560
     tgtgtggtca aaccgaaggc agtcatcgta gaactgcatc tcttttcgga tgcgtccgtg      4620
     caagcatacg gcgcttgcgc ctacatgaga agtgtggatt cttccggagc cgtaggagta      4680
     gtactattaa cagctaaatc gaaggtagca ccgttgaagt gccaatccat cccacggttg      4740
     gaattgtgtg gagccttgat ggcggcgcag ctttcwgaaa aggttctgga agcsatcaaa      4800
     atggatgtag aagtgttctt ctggacagat tccacctgcg ttctgcagtg gattaaggcg      4860
     atcccctcga catggacgac tttcgtggcc aatcgtgtgg cgaagatcca aggactatcg      4920
     gaaaaccgga cttggcgtca tgttcctgga agtcaaaacc cagccgacct catttcacgt      4980
     ggtgtgaaac ccgaccaaat ccaaggctgt agtttgtggt gggaaggccc accttggctt      5040
     cgaaccgatc cggagttctg gccaacacaa tcagccgttc cgataatcga agatgtggag      5100
     aaggaaggtc gtcgaacggt agcacactgt tcgaaccagc aagaggattt tggaagctgg      5160
     tatgtgaaga aatttccgaa cttctccgat atggtgaggc gtacagcata ctggctgcga      5220
     ttgatggaca ttttgaggaa ggttgaacct agcaagcgac ggtgcggttt tctccaaacg      5280
     gaagagttac gtgaggccga acgtgtgatc attcggcacg tgcagcagga aacgtttcaa      5340
     gaggagtgga agtcgctttc atcaggtggt acagtagcga gaagttcgcc gttacgatgg      5400
     ttccatccac aggtggcaca ggatcttatt cgtgttggag ggcgattagg aaattcatcc      5460
     gagagcgaag atactaagca tccgattgtt cttccagcta gacatccgtt caccaagaaa      5520
     ctattggaac attaccatcg aaaattgctt catgcaggac cccaactcct gttgggcacc      5580
     gttagattgc agtattggcc gttgggcggc cgaagtgtgg caagagacat agttcatcaa      5640
     tgcaatcggt gctttagagt gaaaccgaaa tcagtacagc agttcatggg agaacttcca      5700
     gcggcccgtg tgacggtgtc gcgcccattc tctagcaccg gcgttgatta ctttggtccg      5760
     gtatatgtcc gtctagcacc ccgcagaacc gctgtaaagg cwtacgtagc cgtattcgtg      5820
     tgcatgtgca ccaaggccgt tcacctagaa ttggttacag acttgactac ggaccgtttt      5880
     ctccaagcgt tgcgcagatt cgttggtaga cgtggaaggt gttctgagat stattcagat      5940
     aatggtacca actttgtcgg cgcccgtaac caactgaaac aactattcga actgttaaag      6000
     gacaaggaac atcaagaaaa gattgcgaag gaatgtacca aagaaggcat ccagtggcgc      6060
     ttcaaccctc caagtgcacc acacttcggc ggcctttggg aggctgcagt acgttctgcc      6120
     aagtaccact tacttcgagt gcttggagat caggtgttgt ctttcgaaga catgtccaca      6180
     ttattagtgc aagtcgaagc ctgtttgaac tcgagaccgt tgacagccat gtcagacgat      6240
     ccaaatgatt tggaacccct aacccctgga catttcttga ccggagcctc gttgcaacaa      6300
     cttccggatc cggattacac atcggcccca ttgaaccggc tgacgcaatg gcaagtagtg      6360
     cagaagaagt tgcaagaatt ctggaaaaga tggcggttgg agtatttgtc acaactacaa      6420
     ggaagaacga agcgttggcg accagcagtc ccaatatctg ttggccagtt agtcgtcatt      6480
     cgtgaagaca acgtgccacc catccggtgg aaaatgggac ggatactcga gctacaccct      6540
     ggagatgacg gagtagttag agttgttaca ttgaagacag caacgggaag cttggataga      6600
     gctgttgaaa aattgtgtat ccttccatca tctgttgaag aagttgaaga tattatcgaa      6660
     aggtaaagac aggccgtcca tcagcgcacg agagattttc tttcttttca gaaatccagc      6720
     aatttcaggg cgggcgggaa                                                  6740
//
ID   BEL-779_AA-LTR repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-779_AA-I;
KW   BEL-779_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-574
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-574
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 164-164 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 574 BP; 192 A; 126 C; 111 G; 144 T; 1 other;
     tgtttgcaac tcagataaat caccaaatcc cgttgatgat cccctcgttg caacatagat        60
     ggcacagagt atgcgtaatc atccaaatag gttgcgcaca gaatcatcct cagaagaaga       120
     gccggatcaa aacaaatagc tcgaaggagc gagaaattgc tctccgaaat aatgcattcc       180
     gcatcaatga cgtcactcgt atgcctaggt ttagaattat atagttttaa aatagttttt       240
     cccaacgtcg gcamccagct cggtcgtagc tgataattat cattttaaac ccttgacgcg       300
     acatagataa atgttgtttg tgtactagaa taaatgtgtt tgcccaataa atgtgtagat       360
     aattatgtac caaaattttg tggaataaat agtgtaaatg tgcgtaattt gaagtgtccc       420
     aagtgaataa ccggagagaa atccacccaa gactattgga agacagtatc caatccaacg       480
     aagaacttgt ccgcccagga attcccaccg gttaacccac aaggctccta atacagtcca       540
     ctcactcgga aggaaaagga ccagctccca aaca                                   574
//
ID   BEL-77_AA-I repbase;    DNA;    INV; 6274 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-77_AA_;
KW   BEL-77_AA-LTR; BEL-77_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions 1647596 1641323.
XX
CC   Positions [5328-5888] - Integrase core
CC   'CTAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..6274
FT                 /product="BEL-77_AA-I_1p"
FT                 /translation="MSSGSVAAAGEFSRKKRDSPGGEGASCGSCRRVDNSR
FT                 MVQCDECDVWYHYDCVNVDDSIRNHDWSCNGCLRTALEKQRCALSEQMKRL
FT                 EQQQRQWQQEQQKRVDQMEERQKLEQLRKQQELQRQKQEQFYQTQTAQLQL
FT                 QPQSLRFEAAISELEAPSKSLGVIPKQQQQRVTILEKAASKGVETNDRRDL
FT                 EPLANSTVTNAKPRSRTDGASSKSSRRSTKLRLLQARALEARQSLEKKQLE
FT                 ERLALEREMLETSDSEVESIISIEKINDWLEKTENMGEEAGISMNDTPLPI
FT                 YDELLRKATVSSSQLRPTCSGATAGHSVQQQFIGPIDSIQSRIPRQQPGGS
FT                 CTHAKHPQSGVNISKAYQPAFGEYPPALSGFASLPVHGVASQQPSSTAYPA
FT                 ANHPRHVVQSMTSAVQGIGQPPLTTSTPRQNVESSQQQYPLQMSSDAVPLN
FT                 SGHLAARQTVKDLPKFGGDPEDWPRFIAAYERTSRMCAFRNDELLDRLERS
FT                 LHDKALNAVKSLLLHPDNVPVIMSRLKTLFGNPESIVETMVRRIRMMPPPK
FT                 AEKMETIVDFGVAVQNLCATMQVCQMDERLYNVALLQELVDSLPSALKMKW
FT                 AFHRKDKGAVTLLDFSDWIGELVDALCQVIHPAVRAKPQRSESKPERKVRR
FT                 DEAFVHAHSTDPQEQSDRKECLACENECTSLEKCDSFLKMTPNARWTLVNQ
FT                 KKICRKCLTKHFKACERRVPCNQGGCSFLHHRLLHDDSRHQRPSPSIPTQV
FT                 ASVNTHSLLGRVLLKYVRVTVYGKGKSITTYAFLDAGSTSTLMEHSLWEEL
FT                 NLSGEKSPLCISWTGGQGRYEKDSVVFSAEITGAHTPKQSYRLPEVHTVRS
FT                 LDLPAQTLSVSTLAKKFHHLSGLPIESYVAVKPRILLGVDSSRLEYPLDSK
FT                 EGDENQPTAVLTRLGWIVYGPCSAPGQPIPKKEVSYGYHICQCEGLHSTVK
FT                 NYFSMDSLGVQLADKPLMSKDDERALELLQKNTIRRGKRYETCLLWRYDDL
FT                 RMPESKAMALKRHECLNKRMAREPRLAKELHEKIMDYKAKGYIRKLSAQEE
FT                 ATHTERSWYLPIFPVVNPNKPGKLRIVWDAAAKVGKLSLNSFLLKGPDLVM
FT                 PLQHVLQRFREFRTAVTGDIREMFHQVRINPEDQHCQRFLWNDGVPGKVPS
FT                 TYAMQVMTFGASCSPSSAQYVKNLNAERFRSQFPDAVEAICNGTYVDDMLC
FT                 SVESEAEAVRLAQDVRAIHAEGGFEIRGWLSNSEKVVEAMGESKLIQKDLN
FT                 KNGELSTEKVLGMWWHTTNDTFTFKIPKRCQHELLSGAQVPTKREVLRILM
FT                 SVFDPLGLLANVLMFLKVLLQEIWRSKIGWDEPITDSQLERWRTWLSVLHQ
FT                 VESVSVPRCYRTITTSSVKTNEIQLHVFVDASENGYAAVAYFRFEERSTIE
FT                 CSFVTAKTRVAPLKYVSIPRLELQAAVIGTRLAKDIAETHRIPIRKRFFWT
FT                 DSRDVLCWLCSDHRRYSKFVGARIGEILENTGHSEWFWIPTRENVADEGTK
FT                 WQKLPDLSPSSRWFKGPDFLWRSYAVWPTQPATHGITTTEINASVNVHAVH
FT                 EPILNFAKFSSWRKLLRVTAYVFRFISNIRARLQNRPSSTGILDQPELIAA
FT                 ERCIYRQAQLEVFGEEISQLKLSTNAEGKSVAPIPKSSSLYKLSPFLDIHG
FT                 VLRASGRTAGCQFIDEDAVHTIILPKKHSVTTLVVQFTHERYHHLNHETVV
FT                 NELRQHYWIPQLRRICYKVRLHCQYCKNAGARPQPPVMADLPPARLAAYSR
FT                 PFSHTGIDFFGPMQVIVGRRIEKRWGVLITCLVVRAIHIEIAHSLNTSSCI
FT                 MALRNFMARRGTPVELFSDRGTNFVGANRELSEALRALDKDRLMEEFVTPN
FT                 TKWTFLPPSSPHMGGSWERLVQSVKKILGNMHLPRTPTDEVLRNSLMEVES
FT                 IINSRPLTYVPIEDAECEALTPNHFLLGTSGGTKPLVPYDDSPATLVNSWK
FT                 TSQVFANMFWKRWLREYLPTITRRTKWHYPAKPIQIGDIVIIVDPDLPRNS
FT                 WPKGRVVDVNLKNGQVRSATVRTPSNVYERPAVRLAVLDVGAIGSTHQPGS
FT                 CVPGGT"
XX
SQ   Sequence 6274 BP; 1723 A; 1551 C; 1652 G; 1348 T; 0 other;
     aattaaattt tccgtttaat tccggaatgt caagcggaag cgtagcggct gccggggaat        60
     tttcccgaaa gaaacgggat tcccctggtg gtgagggagc gagttgcggg tcgtgccgtc       120
     gtgtcgataa tagtcgaatg gtgcaatgtg acgagtgtga cgtgtggtac cattacgact       180
     gtgtgaatgt ggacgacagc atccggaatc acgattggag ctgtaatggc tgcctaagga       240
     cagcactgga aaagcagaga tgtgctttga gcgagcagat gaagcgactt gagcagcaac       300
     agagacagtg gcaacaagag caacagaagc gtgttgatca gatggaggaa cggcagaagc       360
     ttgaacagct gcggaaacaa caagagttgc agcggcagaa gcaggagcag ttctaccaga       420
     cgcagacagc acagttgcag ttgcagccac agagtttgcg gttcgaagca gctatatcag       480
     aacttgaagc tccttcaaaa tcgcttggtg ttatcccgaa gcagcagcag cagcgtgtca       540
     cgatcttgga gaaagctgca tcgaaaggag tcgaaacgaa tgatcgacgt gatctggaac       600
     cgttggcaaa ctcaaccgtc actaatgcga aaccacgtag cagaaccgac ggagcttcat       660
     cgaagtcatc gaggcggtca acaaaacttc ggcttttgca agctagagct ctggaagcga       720
     gacaatcgtt ggagaagaag cagctagaag agcggttagc tttggagcgt gagatgctcg       780
     agaccagcga ttccgaggtg gagtcgatta tcagtatcga aaagataaat gattggctgg       840
     agaaaacgga gaacatgggg gaagaagcag gaatttcgat gaacgatacg ccattgccga       900
     tatacgacga attattgcgg aaagcgaccg tgtcatcatc tcaactacgt cccacatgca       960
     gcggtgctac agctggacac tccgttcagc aacagttcat cgggccgatt gattcgattc      1020
     agtcacgcat tcctcggcag caacctggtg gaagttgcac tcacgcgaaa catccacagt      1080
     ctggcgtaaa catctcaaaa gcttaccagc cagcgtttgg tgaatatcca ccagcattat      1140
     ccggtttcgc ttcgctacct gtacacggcg tagcatcgca gcagccatcg tcaacagcct      1200
     acccggcggc aaaccatcca cgccacgtcg ttcagagcat gacgtccgct gttcaaggta      1260
     tcgggcagcc acccctgacc acatcaactc cgcggcaaaa tgtcgagtcc tctcagcaac      1320
     aatacccact gcagatgagt agcgatgctg taccgctgaa cagtggtcat ttagcggcga      1380
     ggcagacggt gaaagattta cccaagttcg gaggtgatcc agaggattgg ccgcgattca      1440
     tcgctgccta cgagcgcact agcaggatgt gtgcattccg gaacgatgaa ctgctcgatc      1500
     gtctggagcg tagtctgcac gataaagcgc tcaacgccgt taagagtctg ctgttgcatc      1560
     ccgacaacgt tccggtgata atgagtcggt tgaaaactct cttcggcaat ccggaatcca      1620
     tcgtcgagac tatggtccgg agaatccgta tgatgccacc accgaaggca gaaaaaatgg      1680
     aaacaattgt cgacttcggc gttgcagtac agaatctgtg tgcgactatg caagtgtgcc      1740
     agatggacga gcgactatac aacgtcgcat tacttcaaga gcttgtcgat agcctgccat      1800
     cagcgttgaa aatgaagtgg gcgttccatc ggaaagataa aggagctgtc acactattgg      1860
     acttcagcga ctggatcggt gagctggtgg atgccttatg ccaagtgatt catccagcgg      1920
     tgagggccaa accacaacgg tccgagagca agcccgagag gaaggtaagg agagatgaag      1980
     cctttgtcca cgcgcattcg acagacccgc aggaacagtc agataggaaa gaatgtctag      2040
     cgtgtgaaaa cgagtgtact tccctagaaa aatgcgacag ctttctcaaa atgacaccga      2100
     atgcacgatg gacgctagtg aaccagaaaa agatctgccg gaagtgcctt accaagcatt      2160
     tcaaagcctg tgagaggagg gttccctgca accagggtgg gtgtagcttc ctgcatcatc      2220
     ggctgttgca tgatgacagt agacaccaaa ggccgtcacc cagcataccg acgcaggtcg      2280
     cttcagtcaa cactcacagc ttgctgggaa gggtactgtt gaagtacgtt cgtgtcacgg      2340
     tatatggcaa aggtaaatca atcaccacat acgcatttct cgatgccgga tcgacttcaa      2400
     cgctgatgga acacagctta tgggaggaac taaacctcag cggagagaaa tcccctttgt      2460
     gcatatcgtg gactggcgga caaggccgat acgagaaaga ttcggttgta ttctctgcag      2520
     agatcaccgg cgcccatacg ccaaaacaaa gctaccgtct cccggaggtg cacacagttc      2580
     gaagtcttga tcttcctgca caaacactgt cggtatcgac tctagcaaag aaattccatc      2640
     acttgtcggg tttaccgatc gaatcatacg tcgcagtgaa accacgaatt ttgctcggcg      2700
     tcgacagttc cagactggaa tatccgctcg actccaagga gggtgacgaa aatcagccga      2760
     cagcagtcct gacgcggctg ggttggatag tttacggtcc gtgctcggcg ccagggcaac      2820
     caatcccgaa gaaagaagtt tcttacggct accatatttg tcaatgcgag gggcttcatt      2880
     cgaccgttaa aaactacttt tccatggaca gcctcggagt acaacttgcc gataagccac      2940
     tgatgtccaa ggacgacgag cgagcgcttg agctgctgca aaagaatacg attcgccgag      3000
     gaaaaagata cgagacgtgt ctgctgtggc gttatgacga ccttcggatg ccggagagta      3060
     aagccatggc cttgaagcga cacgaatgct taaacaagcg catggctcgc gaaccaaggc      3120
     tagccaagga attgcatgag aaaatcatgg actataaagc caaagggtat atccgaaagc      3180
     tatcggcaca ggaggaagca acacacaccg agcgttcgtg gtatctacca atctttccgg      3240
     tcgtgaaccc aaacaaacct ggaaagctgc gaattgtttg ggatgccgcc gccaaagtgg      3300
     gaaagctttc gctaaattca ttcctgctga aaggccccga tctagtcatg ccactgcaac      3360
     acgtcctaca acggttcaga gagtttcgaa cagcggtgac aggagacata cgcgaaatgt      3420
     tccaccaagt ccgaattaat cctgaagatc aacactgtca gaggttcctg tggaatgatg      3480
     gcgttcccgg aaaagttcct tcgacgtacg cgatgcaagt gatgacgttc ggtgcgagct      3540
     gctccccaag tagcgcacag tacgtgaaga acctgaatgc agaacgattc agaagccagt      3600
     ttccagatgc ggttgaggct atatgtaacg gaacgtacgt ggatgatatg ctctgcagcg      3660
     ttgagtccga agcagaagct gtgaggcttg cgcaagatgt tcgtgcaata catgcagaag      3720
     gtggattcga gatccgggga tggttatcaa actccgagaa agttgtggaa gccatgggcg      3780
     agtcaaaatt gattcagaag gacctgaaca agaatggtga gctgtccacc gagaaagttc      3840
     tgggaatgtg gtggcacaca accaacgaca cattcacctt caagattccg aagcgatgcc      3900
     aacatgagct gctatccgga gcgcaagttc ccacgaagcg tgaagtgcta cggatcctaa      3960
     tgtccgtctt cgacccactg ggactccttg cgaacgtgct tatgttctta aaggtactac      4020
     ttcaagagat atggcgttct aaaatcggat gggacgaacc gataaccgac tcccaactag      4080
     aaaggtggag aacctggctc agcgtgctgc accaagtgga gagtgtttct gttcctcggt      4140
     gttatcggac aataacgacg tcgtcagtca aaaccaacga aattcaactg catgtctttg      4200
     ttgatgccag tgaaaatgga tacgcagcag ttgcctattt ccgattcgaa gaacgaagta      4260
     caatagaatg ttcatttgtc actgcgaaaa cacgtgttgc acccctcaag tacgtttcca      4320
     tccctcggct ggagcttcaa gcggcagtga ttggtactcg tttggcaaag gatattgctg      4380
     aaacccatcg aatcccgata agaaaacggt tcttttggac cgattctagg gatgttctat      4440
     gctggctgtg ctcggaccac agaagataca gcaaattcgt cggtgccaga atcggtgaaa      4500
     ttctggaaaa tactggacac tcggagtggt tttggattcc aacaagggag aacgtggcag      4560
     acgaaggcac aaagtggcag aagcttcccg atctttctcc atcaagccgc tggttcaagg      4620
     gaccggattt tctgtggcgt agttatgcgg tgtggccaac tcagccggca acccacggca      4680
     taaccacgac cgaaataaat gcttcagtta atgtccacgc ggtacacgaa cccatcctaa      4740
     actttgctaa gttctccagc tggcgcaagc ttttaagggt gacggcatac gtattccggt      4800
     tcatcagcaa cattcgagcc agattgcaga atcgtccatc atctactggc attctcgatc      4860
     aaccggagct gatcgcagcg gaacgttgta tatatcggca agcccaacta gaagtctttg      4920
     gcgaggagat ctctcaactg aagctttcca cgaatgcaga aggaaagtca gtggcaccaa      4980
     ttcctaaaag cagctcactc tacaagctat caccgttcct tgatatccac ggagtgctgc      5040
     gtgcgagtgg acggaccgcc gggtgtcaat tcatcgatga agacgctgtt cacaccatca      5100
     tactgccgaa gaagcactca gttacgacac tcgtcgttca gttcacccac gaacgttacc      5160
     atcaccttaa ccacgaaaca gtagtcaacg agctgcgaca acattactgg attccccagc      5220
     tgcgaagaat ttgctacaaa gtccgtctgc attgtcagta ctgcaaaaac gctggagctc      5280
     gaccacagcc acccgttatg gctgatctac cacctgctcg tctagccgct tactcgagac      5340
     cgttttccca taccgggatc gacttttttg gaccaatgca ggttattgtt gggcggcgaa      5400
     tcgagaagag gtggggagtg ctaatcacct gtttggtggt acgggctatc catattgaaa      5460
     tcgcccattc actcaacact agttcttgca tcatggcctt gcggaacttt atggcacgac      5520
     gtggaacccc tgtggagcta ttcagtgata ggggaacaaa ctttgttggg gctaaccgtg      5580
     agttaagcga agcgctccga gctctcgaca aggacaggct catggaggaa ttcgtgacgc      5640
     caaacaccaa gtggactttc ctgcccccaa gcagcccgca tatgggagga agttgggaaa      5700
     ggttggtgca atcggtgaag aagatccttg gcaacatgca ccttccaagg acacccaccg      5760
     acgaagttct tcgtaacagc ttgatggagg tggaaagcat catcaactcg cgccctctca      5820
     cctatgttcc catcgaagac gccgagtgtg aagcactaac gcccaaccac tttcttctgg      5880
     gtacctctgg tggcacgaaa ccattagtgc cctacgacga tagccccgct acgctagtga      5940
     acagttggaa aacttcgcag gtttttgcca acatgttctg gaaacgttgg cttcgtgagt      6000
     atctgccaac gattacccgc cggactaaat ggcattatcc agctaagcca atccaaatcg      6060
     gtgacatagt tataatcgtc gatccagacc tacccagaaa ctcgtggcca aaagggcgtg      6120
     tcgtagacgt gaaccttaaa aatggacagg tacgtagtgc aacggtacga acaccctcga      6180
     acgtttacga acgcccagca gtgagacttg cagtattgga cgtaggcgca ataggtagta      6240
     cacatcaacc cggatcctgt gtaccggggg ggac                                  6274
//
ID   BEL-77_AA-LTR repbase;    DNA;    INV; 815 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-77_AA_;
KW   BEL-77_AA-I; BEL-77_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-815
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions 1641322 1640508.
XX
SQ   Sequence 815 BP; 287 A; 150 C; 160 G; 218 T; 0 other;
     tgttccgcca tccgcggacg cgcctccgct accaataagc ccccacaagg attcgacgcc        60
     actgactcag cgtgatgcgc ttgtgtcggt ggacaaacct caaaggcttg cgtatgtata       120
     gctgagaatg tgtaggcata cgaagtaggg agacagaaaa aatatccaag tataaacaaa       180
     caacctgtga acacttccct gaattaaaat ccacttcatt tgcaaataat tataaaaaaa       240
     cagtagtgaa ttagatcgtt tttgaattag tcggtagtgg gtttatcact gaagaatcag       300
     caggtaaaaa tgaatttatt atcctagatt gtaaacttaa aactatatgt acttatacta       360
     tgttgtaaat atcacaggtt ctatcacagt cggcaaagaa aataaaccac tagatttgta       420
     gctaatcctg aggcagtgat ctgaaacaag aactatagga tagtcaaggt aacttacttt       480
     agtaatacat tatcagaagt ttacaaaaca tgcaatattg aaatgcaggt atcaggcact       540
     gcacccgcag caataccgta cagtaccgat tttcggaccc aacggaaatt aggaaataga       600
     cactaaacgt aagtaaatgt aaaatttcga gatttaacta aagtgactct ggcaaagaat       660
     tcgtcaagat gaataatcca taaatttgaa taattgtatc ccaacaggga aaatttaacg       720
     tgccagccgt aataataaac gttgtaaatt gaattcggcg agtcgtttaa gtttttggaa       780
     gttcgtctac cgtattgttg ccgattgcgg gaaca                                  815
//
ID   BEL-77_CQ-I repbase;    DNA;    INV; 7137 BP.
XX
AC   AAWU01021738;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-77_CQ_;
KW   BEL-77_CQ-LTR; BEL-77_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7137
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 295-295 (2011).
XX
DR   GenBank; AAWU01021738; Positions   17435   10299.
XX
CC   Positions [6082-6660] - Integrase core
CC   'TCTGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2614..7038
FT                 /product="BEL-77_CQ-I_1p"
FT                 /translation="MTDFLQTRIRILESLPKKKADSKVVRQNQVRSKPAVV
FT                 KASYNTAQESGGPCCACSGTHFLHQCKSFQQRTVSDREALLRTNSLCRNCL
FT                 KSGHLAKDCSSRFSCRNCNKRHHTLLCFKSGKDKGSAQYKRDNSKAATDES
FT                 QASGHSSSSTSNQVTPEITVSNSTQLFSTQVLLATAIVIIEDDEGNRLPAR
FT                 ALLDSGSESNFISEHLSQRLRVLRNKVDISVSGIGRSVSKVKQQIRATLCS
FT                 RVSNFSRDMRFLVLPKVTVSLPTSNINTAGWTIPDNVVLADPTFSVSKGVD
FT                 MVLGIESFFDFFETGRKISLGEELPALNESVFGWVVCGGIADSGESIRITC
FT                 NVSARDKLEALVTRFWSCEEVESGSSFSPEEARCEALFAQTVQRGADGRYS
FT                 VALPKNEAILSKLGESRNIALRRLHGTERRLARDAHLQDQYTEFMDEYLRL
FT                 GHMHKVEETDTVKRCYLPHHPVVREASTTTKVRVVFDASCKTSSGVSLNDA
FT                 LLCGPVIQQDLRSLIYRCRIKQIMLVSDVEKMFRQIGITPEDRALQCVLWR
FT                 PTPSAEVCTYELNTVTYGTKSAPFLATRALKQLAMDEKHRFPLAAKAISED
FT                 VYMDDVITGMDDEDAARNLRIQLDEMMISGGFRLRKWACNRAEVLRGVAEE
FT                 NLAIPFPEGINLDKESSVKTLGLTWIPNTDEFKVQFDITPTVAEDELCKRV
FT                 VLSKAASLFDPHGWFGATITTAKIFLQQLWTLVDADGKRLDWDTPLPPTVG
FT                 ENWRKYEEQLPVLNSIRFARCVVIPNAEKVELHCFSDASKKAYGGCVYVRS
FT                 ENAAGDVMVRLVASKSRVAPLKVQTIPRLELCGATLVAQLFKVLQEALDIP
FT                 LSAHFWTDSTCVLSWLDAIPTTWATFVANRVSKIQTITEGHQWKHVPGVQN
FT                 PADLISRGIMPNDIVDNLLWWNGPPWLALGREHWPNSTATVAHDEVETERR
FT                 RTAVAIVASNLQEFTDYYLSKFETYPILIRRTAIWLRLMKNLPLPDEERSR
FT                 GFITSAELRQAEYVLIRRVQKEVFAEEWKALSASQPLPKKSPLRWYHPYID
FT                 RDQILRVGGRLTHSEEGEETKHPAVLPARHQLTRMILQHYHMRLLHAGPQL
FT                 LLGAVRLRFWPLGGRSLARLIVHQCNRCYRCKPSPVQQFMGDLPAARVTVS
FT                 RPFSKTGIDFFGPVYVRPGPRRTAVKAYVCLFICLCTKAVHLELVSDLSTD
FT                 RYLQALRRFIGRRGRPAEIWSDNGTNFVGGKNRLQELFALMKDSEHKEKVA
FT                 KEFADQGIRWIFSPPSAPHFGGLWEAAVRSAKHHLLRVLGEETLAIEDMTT
FT                 LLVQVENCMNSRPITQLSDDPNDLEPLTPGHFLVTSSLQSLPDPSYLDVPT
FT                 NRLNYWQQVQRKVQEFWRRWKRDYLSQLQSRTKRLYAAVPIEVGRLVVVVD
FT                 DNLPPIRWKLGRIHTVHPGDDGVVRVVTLKTASGFLKRPVEKICLLPRPDE
FT                 QPTTDSTEEK"
XX
SQ   Sequence 7137 BP; 1839 A; 1715 C; 1822 G; 1761 T; 0 other;
     aacatataaa gtttgtctat ggagtcttga aactttatat tcactttata cgcatggagg        60
     taaaattgag tggcgacatc tagagttgat ataaagtccc tgactgaaaa gtccgtcgga       120
     cgtccgtcgt ttgtcgtccg tgcaatcgta cgacaatgtc gtgcgacttt cgcacgaatg       180
     tcatacgttt ttgcaccaaa atgtcgtatt tgtcgtgcga tcgatcatcg aaattgttcg       240
     acattgtcgt acgacattcg accgacgtcg cacggtttgt ttttagggat cgtcctcgca       300
     cggcatcgta gatcgtcgcc tgctactgaa cttcagcgcg ggacactgct tgtccaggta       360
     aatactttga gttcagtata tgtctggccg gcgcgccaca tacgtgaatc taacaccgcc       420
     atttcgacct cttctttacg ttgtgacctg tgacctgtga gtgctactga tcggatcgat       480
     catctggtgc cacctacgac tcgactggat gatcatcgcc aacccggatt aggccggtaa       540
     cgtgagtcaa cgtacagcgc agcgttctgc gcgacgaccg aacgggacta catggtgtcg       600
     gttgcctgct ggctgccatc ttcgactggg agacgaatgt actaattggt gcacaccgcg       660
     aggatcgtca cgggagagat cgacgacacg tcgacggccc gagctggacg acgtcgttgc       720
     ggatcaccgg ctggatagct ggaatacatc gcgagcatcg aagaggcagc atcatcggtt       780
     gttttcccag gtaaatactt tagacgcagt atatgtctgc cgaggcctga acggaaatac       840
     acgccattaa atcatatgtt cacctcttcg attgcctatt gtaccaccac atccctgtgc       900
     atcacgcctc gagcgtgtcc accaacccca tttgaatttg catttgaatt ttggatcggc       960
     tgttagtttc tccaggtgag gccaacagta tatgcctgcc gaggcagttt cttggtgata      1020
     ctacatccat ggtttttcat cctcttcgcc ctacacacga tcgactgagc tgattattgg      1080
     actggcttcg cacgattcgt agaactttgg tgggatcaga tcttcgtttt gttggctgct      1140
     gtgttgctgt tggttcctac aggtaataca acacggtata tgtcagccga agcattactt      1200
     tggatactac atgcccacac tttcgccctc ttctgccacg tgtactgtac gtaacattga      1260
     gccgcttgag ccgaatcgaa cgatttgtga cgacaaatat ttgacgctgg tctgcatcgg      1320
     ttgggaggta ccaacacctg tttgtccagg taacacattt tagtgtatgt ctagcgaagc      1380
     taggcccaac cgcagaatac tacagccacg catctcgttt ctgatctctt cattgcaaca      1440
     acaacacaac atgccgatca ccacccggag taacaaaacg ttgtcactca aacagttgac      1500
     gacggttttc aagcaggtga aagcgtcaat gcaggacatt tttaactttt cggctgattt      1560
     ggaaaagagc tgtacgattg ctgatgttga agtaagattg ggtgctttag atgagctgtg      1620
     ggtagacttc aatgagactc tggttgagat tcaatctcat ggagagtacg tggcaacgga      1680
     agacgcaact tatgaagctg accgtgcgaa gttcagtgag agttactttc tcaacaaatc      1740
     tcgtttaatc accaaatcga gagaacttca agctcctcct gcggttctgg aacagaccat      1800
     ccggtctgag gaaacttcgc atgggctcaa cgatcacatt cggctaccgc agattaagtt      1860
     gcagaagttc accggaataa ttgaggaatg gctcagcttt agagatctgt ttgttttacg      1920
     accccacaga cgaccggagg ttagccgaaa ctcggtcgtg gggtgtaatg attatcacac      1980
     taattaacac tgattacagg taaacttcgt cagtataata aaacgcgtgt ggttagtctt      2040
     ctatcaatca agttaataac attttatttc aaccacatga caacacacag taaacaatga      2100
     cgcgctgtca atgacagtcg aggctcggca ttcgggccga gttcgagtcc agcgccgaat      2160
     gcacagtggg cacattcgca attccagtcg tcacaatagt ttgtatcgct cattcactca      2220
     aaggctgaac tctcagacgt cgaaaagttt tactacctga ggggttgcct tgatggaaaa      2280
     ccggccggct tgatcgatca tctgaagatc actgcagaaa gctacactgt ggcctggact      2340
     attctgctga atgagtacga caacgataag cttctgaaga agcggcagat tcaatcgcta      2400
     tttgaactac ctgtaatcac cgaggaatct tcttcagact tgcacactct cgtggatgga      2460
     ttcttgagaa tagtacaaac attggatcgt gttttggagg aagcgaactt caaggacttg      2520
     ctactggtca acatcttatc atctcggctt gactcgatta ctcgtcgagc ttgggaagag      2580
     tattcagcaa aggataatga tactttgaag gacatgacgg actttctcca gacgcgtatt      2640
     agaattctcg aatcgctacc caagaagaag gcagacagca aggttgttag acagaaccaa      2700
     gtccggtcga aaccagcggt ggtgaaagct agttacaaca ctgcacagga gtctggaggg      2760
     ccttgttgtg catgttctgg aacgcacttt ctacaccagt gcaaatcgtt tcaacaaagg      2820
     acggtgtcag acagagaggc actactccga accaattcgt tatgtcgaaa ctgtttgaaa      2880
     tccggccact tggcaaagga ctgctcgtcg agattctcgt gtcgaaactg caacaagcga      2940
     catcacacgc tgttgtgttt caaatcgggg aaggataaag gttctgccca atacaagcga      3000
     gacaactcta aggcagctac ggacgaatct caagcatcag gacattccag ctcgagcacg      3060
     tcaaatcaag tcactcccga gataacagtt tcgaactcaa ctcagctgtt ttcaactcag      3120
     gtcctgttag caactgcaat tgtcatcatc gaggacgatg aaggcaaccg acttccggca      3180
     cgagccctct tggattccgg atcagaaagc aatttcatct cggagcatct gagccaaagg      3240
     cttcgcgtac tacggaataa ggtggacatt tccgtttcgg gcattggaag atcggtatcc      3300
     aaggtcaaac agcagattcg agctacgctg tgctcacgtg tctccaactt ctcccgagac      3360
     atgcggtttc tggtactacc caaggtgacg gttagcttac caacttcaaa catcaacact      3420
     gctggttgga ccattcccga caacgtggtc ctggccgacc caaccttctc tgtctccaag      3480
     ggcgtagaca tggtgttggg cattgaaagt ttcttcgatt tcttcgaaac tggtcgtaag      3540
     atttcattgg gcgaggaact accagcactc aacgaatcag ttttcggttg ggtagtctgc      3600
     ggaggaattg cagactcagg agaatctatt cgcatcacat gcaacgtgtc ggcgagggat      3660
     aaactagaag ctttggtgac tcggttttgg tcctgcgagg aggttgagtc aggcagcagt      3720
     ttttcgccgg aggaagcacg ttgcgaagct cttttcgcgc aaacggttca gcgcggagct      3780
     gacggtcgct actcggtggc tttaccgaag aacgaggcca ttctctcgaa gctcggcgag      3840
     tcgaggaaca tcgcactcag acgccttcac ggtacggagc gaaggctggc gcgggacgcg      3900
     catcttcagg atcaatacac ggaatttatg gacgaatatc tgcgcctggg gcatatgcac      3960
     aaggttgagg aaactgatac agtcaagcgg tgctatctcc cacaccatcc agtagtcagg      4020
     gaagccagca cgaccaccaa ggttcgcgtg gtatttgacg caagttgcaa aacatcgtca      4080
     ggagtttccc taaacgatgc gctgttatgc ggtccagtca tacagcaaga tttacggtcg      4140
     ctaatctacc gctgccgtat caagcagatt atgctggtgt cggacgtcga gaagatgttc      4200
     cgacaaattg gaatcacccc ggaagatcga gctctacagt gcgtactctg gcgaccaacg      4260
     ccgtccgctg aggtgtgcac gtatgaactg aatacggtta cgtatggaac gaaatcggca      4320
     ccgtttcttg ccactcgcgc tctgaaacag ttggcaatgg atgaaaagca tcgttttccc      4380
     ctagcggcaa aggcaataag cgaggacgtc tacatggatg acgtcataac cgggatggac      4440
     gatgaggacg cagcacgcaa tctgagaatt cagctggacg aaatgatgat cagcggggga      4500
     tttcggctca gaaagtgggc gtgcaaccgt gcagaggtct tgcgcggtgt tgctgaggag      4560
     aatttggcca ttccatttcc agaaggaatc aacctggaca aggaatcgtc cgtaaaaaca      4620
     ttgggtttaa cttggatccc taacacggat gagttcaagg tacagttcga cataacacca      4680
     actgttgccg aggacgaact ctgcaaacgt gtcgttttat caaaggctgc atctcttttc      4740
     gacccgcacg gctggtttgg ggcaacaatc acaacagcga agatctttct ccagcagttg      4800
     tggacactgg tagatgctga cggaaagcga ttagattggg acaccccgtt accacccacg      4860
     gtgggtgaga attggaggaa gtatgaggaa caacttccag tgctcaattc aattcgtttt      4920
     gctcgttgtg tggtcattcc aaatgcggaa aaggtggagt tacattgctt ttcggatgca      4980
     tcaaagaaag cgtacggagg ttgtgtttat gtacgaagcg aaaatgcagc tggcgacgtc      5040
     atggtacgac tggtggcttc caaatccaga gtggcgccgc tgaaggtaca aacgattcca      5100
     cggctggagc tgtgtggcgc gacgctggta gcccaactct tcaaagttct gcaggaggca      5160
     ctggacatcc cgttgagcgc gcatttttgg acggattcga cgtgtgttct cagctggctt      5220
     gacgcgattc caacaacgtg ggccactttc gtcgcgaatc gagtttccaa gatccaaacg      5280
     atcacggagg gacatcaatg gaagcacgtt ccaggtgtgc agaatccagc agatctgata      5340
     tccagaggaa tcatgccaaa tgacatcgta gacaatcttc tctggtggaa cggaccacca      5400
     tggttagcgt tgggacggga gcattggcca aactcaacag ctacagtggc gcacgatgaa      5460
     gttgagacgg agcgtcgacg cacagcagtg gcgatcgttg catcaaacct gcaagagttt      5520
     actgattatt atttgtccaa gtttgaaact taccctattt tgatacgaag aacagcaatc      5580
     tggttgcgct tgatgaagaa tctgccttta ccggatgagg agcggtccag gggtttcatc      5640
     acttctgcag agttgaggca ggctgagtat gtgctcattc gtcgtgtgca gaaagaagtg      5700
     tttgctgaag aatggaaggc cctgtcagca agtcaaccgc tgccgaagaa atccccgctt      5760
     cgctggtacc atccgtacat cgatcgtgat caaattctgc gggtcggtgg gcgattgacg      5820
     cactcggagg aaggagaaga aacgaaacat ccagctgttc tgcctgctcg tcaccagctc      5880
     acacgcatga ttcttcaaca ctatcacatg cggctgctcc acgctggccc acaactacta      5940
     cttggtgcgg tgagacttcg tttttggccg ttgggaggca gaagcttggc tcggctcatc      6000
     gtacaccaat gcaatcggtg ctacaggtgc aaaccatcac ctgtacaaca atttatggga      6060
     gatctgcctg cagcgcgagt cacggtctct cgtccgttct ccaagactgg aatcgacttt      6120
     tttggaccag tttacgtgcg accaggaccg aggcgtacag cagtgaaggc atacgtttgt      6180
     ttattcattt gtctatgcac aaaagcagtt catttggaac ttgtgtcgga tttatctaca      6240
     gatcggtacc tgcaagcgct gcggaggttc ataggtcgcc gtggcagacc cgcagagatc      6300
     tggtctgata acggaacaaa ttttgttggt ggtaaaaatc ggcttcaaga actgttcgct      6360
     ttgatgaaag actcggagca caaagagaag gtcgctaagg agtttgctga tcaaggcatt      6420
     cgttggattt tcagcccacc aagcgcacca cactttggcg gtttgtggga ggccgctgta      6480
     cgatcagcaa aacatcatct gctacgagtg ttgggggagg aaactttagc catcgaagac      6540
     atgacaactt tgttggttca ggtcgaaaat tgcatgaatt ctcgcccaat cacacaattg      6600
     tcagacgacc caaacgattt ggaaccccta acacctggac acttcctcgt aacttcttcg      6660
     ctgcagtctt tgccggatcc aagctacctc gacgtgccca caaaccgact caactactgg      6720
     cagcaggttc aacgcaaggt ccaagaattc tggagacgtt ggaaacgcga ctatttgtcg      6780
     caacttcaga gcagaactaa acgtttgtat gcagcagtcc caattgaagt tggccggcta      6840
     gtagtcgtgg tggacgacaa cctgccacca atacgttgga agctcggcag aatacacacg      6900
     gtacatcccg gggacgatgg ggttgtacgg gtggtaacgc tgaagacggc ttcgggattc      6960
     ctgaaacgcc cggtggaaaa aatatgttta ttaccacgtc cggatgaaca gccaacaaca      7020
     gactctacag aggaaaaatg aaaacatcac tttcccatcc cctcccactc ccactccctc      7080
     gaagaggatt tttttattta ttttcagaaa tgctggatat ttctgggtgg gtgagaa         7137
//
ID   BEL-77_CQ-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   AAWU01021738;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-77_CQ_;
KW   BEL-77_CQ-I; BEL-77_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 296-296 (2011).
XX
DR   GenBank; AAWU01021738; Positions   10298    9702.
XX
SQ   Sequence 597 BP; 153 A; 144 C; 153 G; 147 T; 0 other;
     tgttcgggga tacaaccctg gatcaccgcg agctattgtg ccagtccatc gagcgacgag        60
     ctctggaccg cgattgcgtg gttgctgcag cgggaacgag atggccagcg tcatcgatag       120
     tcatcgacgg accagcagca gcagatcggg ggagcgagtt gatgtcgccg attctcagag       180
     aggatcgacg aggatgagct ttgcatgacc cgtatcaaca tgacccaatt attatataag       240
     ctaagaaatt acgtaactaa aactctcagt cattcctggt caccagatga aaaaaggtca       300
     agctaggccc tcgcacaaat tttaacgtgt ggttcaataa gaacatagtt tgttaggtgt       360
     tagaaaaata aatgtagttt gtcgaaatat aagtggtttc ctgtctaaaa gtgttgtacg       420
     tgattttgtt tgttcaaacc gttcaccaac ctggaacctg gcccggttgg aacccgggta       480
     atctgccttg acccgttgga agtccctcac cgaattgtcc atcatcggtg ctcacccgtt       540
     cccgtcaacc agtggtcgat gtggagtgct ggctggaccg ttgccaacac ccccaca          597
//
ID   BEL-780_AA-I repbase;    DNA;    INV; 5999 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-780_;
KW   BEL-780_AA-I; BEL-780_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5999
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5999
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 248-248 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           658..5925
FT                 /product="BEL-780_AA-I_1p"
FT                 /translation="MSEKKMKQKELKRRNIMDSISRIDEFLNNYNPERDSQ
FT                 EVAIRLNRLDKLMENFEDIQGEYETFDDSMEFLKGNMSIRARVEEQYFRVK
FT                 GGLTSLLPPPAPVATPTITSVPAISHSIGVKLPTITLPQFDGDLNEWLTFH
FT                 DSFSSLIHSSADIPCIQKFQYLRSALKGDALKLIESLTISAANYSVAWQSL
FT                 LNRYSNKYLLKKKHLQAITCPQKPLAKSASKLCVVVEEFQRHVKILEQLGE
FT                 PTDHWSSLLVHLLCSRLDEQTLKDWEEFISAGNDPTYTNLVEFLNKKIRTL
FT                 ESLSIAADHFAPSIQNKHIPPSKQTRSSQGPPSSRINSYAATENYLPGCHA
FT                 CSQQHLLVKCPVFEKMPLKDRLNLVNAKKICSNCFRGDHFVRKCSSKFSCR
FT                 VCQKRHHSLLHPGFDSPTSSNGNSNTGQAPPTQSTNVARCEVEAISAPTEQ
FT                 SISSNSVSDPRSVNVFLSTVVLIIVDGYGREHLARALLDSGSQCCLMSDRL
FT                 CQQLRLVRRRINQPIFGVGEAQIRAVGSVATEVRSRFDKFAIPVDCLVLRN
FT                 ITTNLPAVTIPKNNWSIPEGINLADPDYNVSRKIDLIIGAEHFYNFLKGGR
FT                 INLGETSPTLVESVFGWLVSGKSSYTPTTHPPLCHISTLESLDRHIERFWQ
FT                 IEEVDTKVLSPTEQICEDFYKQTVSRDSAGRYVVKYPKXEGFSQMIGDSYS
FT                 NALRRLEGLERKLDRNELLKERYHAFMAEFINLGHMREIPSDEKLPPTTCF
FT                 LPHHPVLKESSSTTKVRGVFDASAKTSTGYSLNDALLVGPVLQDELYLIVL
FT                 RFRRYRIVLLADIEKMYRMVRMHPDDQPLQCVLFRFGKDHPITRYALTTVT
FT                 YGLSPSSFLATRTLHQLADDEGRSFPLAADALKQDFYMDDFIRGEDSIPAV
FT                 IQLRQEMTKLLNRGGFRLRKWCSNFHEVLDGVPEEDLATQSNRTFDPDEAI
FT                 KTLGLSWEPSSDQFRFDINVDMKDGPITKRKILSEISRLYDPLGLIAPIVV
FT                 RAKILMQQLWMLSLEWDEEVPIEIQAKWRTFVNELPSLSNFRIDRYAFEEG
FT                 DVQLHCFADASDVAYGACVYVRTVGSGGAIKVELLTSKSRVAPLKKRSIPR
FT                 LELCAGQIAAQLTSKVRTTLEIGANSVWYWSDSMVVLHWLRSPPQAWKTFV
FT                 SNRVADIQILTHGSKWQHVPGTENPADLVSRGMAVEQFTESQLWRHGPNWL
FT                 REGEERWPEQNAVWRNDDNDELLERKIITLAIQTPPPPNPIITRFSSYHRL
FT                 LRTIAYCFRFINNARMKQKGSSDFLTTEELEHSKIALVKMVQTECYHNELR
FT                 ALKRGQSVANQSSLRLLNPFVDSSGIIRVGGRLRLSAQPYETKHPILLPGF
FT                 HHFTRLLLTSYHRKLLHGGISHTLAVVRNDFWPTNGRRAVRSTIWNCHRCT
FT                 RVNPRPIKQPVGQIPAARITPSRPFSSTGVDYCGPVLVKSKIRRSAPTKAY
FT                 IALFVCFSTKAVHIELVGDLSTQSFLSALRRFIARRGLPEHIYSDNATNFA
FT                 GAKHELHALYQMLNNRTENARIATSLATNGINWHMIPPRAPNFGGLWEAAV
FT                 KVAKKHLVRQIGTSSLLQEDLETVLVQIEGCMNSRPLVALSDDPNDLEALT
FT                 PGHFLVGSNLQALPEPDLREVPVNRLDRYQLAQQKVQQFWCRWTSEYLKEL
FT                 QHQATINPRKVDLKVGQVVIVQDQQLPPIRWPLARIMHLHPGQDGVVRVVT
FT                 IRTASGLFKRPTSKLCLLPSTMEDDIAGNIADDPAK"
XX
SQ   Sequence 5999 BP; 1559 A; 1500 C; 1414 G; 1518 T; 8 other;
     ttttggtgcc gtgaccagga tcacgggtgt gtagtgatat cgctatttgg atcgggtaca        60
     acgacgctga tacctaaccc catcacccgt cgggaggatt tccctgagaa ttgcagtacc       120
     gtacataatt acaaggcctg tttttggaca ggtacatgtg agtatctgtc cattatttcc       180
     catccccatt gtacggtgct tcctgggtcg ttttttggat cgatttcagc ccatttgtga       240
     tttgcttgct gctgggtggc acgaggttgc tgttgtttct gctgtgtgct gtgtgtggtt       300
     atcccatctt cccgctttgg atttctctcg ctgaaataca tagkttgcgg tccgcggcga       360
     tagtgattgt atcactcaga gtgctaaaag gaatttagcc atcaaatcgc tgttcaaccg       420
     acattagcat cccagctcag gtcgcatata acctgcaaca gcagactgtg tgcgcaaggt       480
     gtgcccactc ggggatcgac atcacgatcg aggttcctgt ctaacttgat aatacaaggc       540
     ctgtctttgg acaggcacag gtgagtgtct gtccaagcat ttcatatccc cctttcggta       600
     cttcctgggt cctttcgatc attacagcca cctgtgggat ttcgtccggc tcgcacgatg       660
     tcggagaaga aaatgaagca gaaggagctc aagcgacgca acatcatgga ttcgattagc       720
     cgcatcgatg agttcctgaa caactacaac ccggaacgag actcccaaga ggtagcgata       780
     cgtttgaatc ggttggacaa actgatggag aacttcgagg acatccaagg tgaatatgag       840
     acgttcgatg attccatgga atttttgaag ggtaatatga gcattagggc aagggtagaa       900
     gagcaatatt ttcgggttaa aggcggtctt acatccctgc ttcctccccc cgcaccagtc       960
     gcaacgccaa caattacgtc agtgccagca atctcccatt caatcggtgt gaaacttcca      1020
     acaatcacac tgcctcagtt cgatggtgat ctgaacgagt ggttaacgtt tcacgattcc      1080
     ttcagttcgc tgatacattc gtcggcagat atcccgtgta tccagaagtt ccagtatctt      1140
     cgttccgcat tgaagggtga cgcactgaag ttaattgaat cactaactat ctccgccgcg      1200
     aattatagcg tggcatggca gtctcttctg aatcgctatt ccaacaaata tttgttgaaa      1260
     aagaagcacc tgcaagcaat cacgtgtcca caaaaaccgc ttgcgaaatc cgcttccaaa      1320
     ctttgtgtcg tcgtggagga gttccaacgg catgttaaaa ttttggaaca attgggtgag      1380
     ccaacagacc attggagtag tttgttggtt catttgcttt gctcgaggct tgatgagcaa      1440
     actctcaagg attgggagga attcatctcg gccggtaacg atccaacgta taccaatttg      1500
     gttgaattcc tcaacaaaaa aatacgcaca ctagaatccc tatcgatcgc tgctgatcac      1560
     ttcgcaccct cmattcagaa taagcatatt cccccctcaa agcaaacaag gtcgtcgcaa      1620
     ggtccccctt catctcgaat caacagctac gctgcaacgg aaaactacct acctggatgc      1680
     catgcatgca gccaacaaca tctgttggta aaatgtcccg tcttcgagaa aatgcccctg      1740
     aaggataggc tgaatttggt gaacgccaag aagatatgta gtaactgctt tcggggagat      1800
     catttcgtcc gcaaatgttc ttccaaattc tcctgtcgtg tttgccaaaa acgacatcac      1860
     agtttgctgc atcccgggtt cgattcacca actagcagca acggaaattc aaacactggt      1920
     caagctccac caactcagtc aaccaacgtg gcacgatgtg aagtcgaagc gatctctgca      1980
     ccaactgaac agtcgatttc ttccaactcg gtatcggacc ctcgcagcgt gaatgtattt      2040
     ttatccaccg tcgtacttat cattgtagat gggtacggga gagagcactt agcgcgagca      2100
     ttattagatt cgggttcaca atgctgccta atgagtgacc gactctgcca acaattgcga      2160
     ttggttagac gccgaataaa tcaacccatt ttcggtgtcg gtgaagcaca gattcgtgct      2220
     gttggctcgg ttgctaccga agttcgatca cgattcgata agttcgccat tccggtagat      2280
     tgcttagttc ttcgtaacat tacgacgaac ctaccagcgg ttacaatccc aaagaacaat      2340
     tggtccattc cggagggcat taaccttgct gatcccgact acaatgtgtc acggaagata      2400
     gatctgatta ttggcgccga acacttctac aacttcctga agggtggtcg gatcaatttg      2460
     ggcgaaacat cacccacgct tgtggagagc gtatttggat ggcttgtgtc aggaaaatcg      2520
     tcatatactc cwactaccca ccccccactg tgtcatattt ccacccttga atcgctagat      2580
     agacacatag aaaggttttg gcaaatagag gaggttgaca cgaaggttct ttccccaacg      2640
     gagcagattt gcgaggattt ctacaagcag acggtatcwa gggattctgc tggccgatat      2700
     gtagtcaaat acccaaaaam ggaaggattt tcccagatga ttggtgattc gtattccaat      2760
     gctttgcgac ggttggaagg tctcgagcgc aagctagacc gaaatgaact tttgaaagaa      2820
     aggtatcacg cattcatggc ggaattcatc aaccttggac acatgcgtga aattccgtct      2880
     gatgaaaaac tacccccaac gacatgtttt ctcccccacc accctgtgct gaaggaatcg      2940
     agctcgacca caaaagttcg aggcgtattt gatgcgtcag cgaaaaccag tacagggtac      3000
     tccctaaatg atgcgctttt ggtcggtcct gtcctgcaag acgagctcta tttgattgta      3060
     ctgcgtttca ggaggtacag aatagtttta ctggcggaca tagagaaaat gtaccgtatg      3120
     gtccgtatgc accctgacga tcagcctctc caatgcgtac tgttccgctt cggcaaggat      3180
     caccctatca ccaggtacgc tctcaccact gtaacgtatg gattatcccc atcgtcgttt      3240
     ttagcaacac gaacgttgca ccaattggcc gacgacgaag gtagatcgtt ccccctagca      3300
     gccgatgccc tcaaacaaga tttttatatg gacgatttca tccgaggaga ggattcmatc      3360
     ccagcggtta ttcaactacg gcaggagatg acgaagctac tcaaccgtgg aggttttcgg      3420
     ctgagaaaat ggtgttccaa tttccatgag gtccttgatg gagttcccga agaagacctt      3480
     gccactcaat cgaaccgaac attcgatcct gacgaggcaa tcaagacgtt gggactaagt      3540
     tgggaaccat cgtctgatca gtttcgcttc gacatcaacg tagacatgaa ggacgggccc      3600
     ataactaagc gcaagatttt gtcggagatt tcgaggttgt atgatccgct tggcttgatt      3660
     gcaccgatag tagtgagagc caagattttg atgcagcaat tgtggatgct gtcgctggaa      3720
     tgggacgagg aggtacccat cgaaattcaa gctaaatgga ggacattcgt caacgaatta      3780
     ccaagcctat ctaacttccg aatcgatcga tatgcttttg aggaagggga tgtgcaactg      3840
     cattgcttcg cagatgcatc cgatgttgct tatggggcgt gcgtatatgt gcggacggtt      3900
     ggatccggtg gggccataaa agtcgagctt cttacttcaa aatcccgagt ggctccgctg      3960
     aagaagcgta gcatcccccg gttggaatta tgcgctggac aaatcgctgc tcagctcaca      4020
     tcgaaggttc ggactacttt ggaaattgga gcgaattccg tttggtattg gtccgattct      4080
     atggtggtat tgcattggct ccgttcacca ccccaagcgt ggaagacgtt tgtgtcgaac      4140
     cgtgtggcgg atatccaaat tctcacccac ggatccaaat ggcagcacgt acccggaacg      4200
     gagaatcctg cggatcttgt ttcgcgggga atggcagtgg agcagtttac ggagagtcaa      4260
     ctttggagac atggacctaa ctggttgcgg gagggagagg aacgttggcc ggaacaaaat      4320
     gcagtttgga gaaacgacga caacgatgag cttctggagc ggaaaataat caccctcgca      4380
     attcaaaccc cgccaccacc caacccaata attacccgat tctcttcata ccatcgtttg      4440
     ctgcgaacca ttgcttattg ctttcgtttc atcaacaatg ctcggatgaa acaaaagggg      4500
     agctcagatt ttttaacaac cgaggagctc gagcactcaa aaattgcgct cgttaaaatg      4560
     gttcaaactg agtgctacca caatgaactc cgtgctctga aaaggggaca gtcggtcgca      4620
     aaccagtcct ctctgagact actgaatcca tttgttgatt catctggcat aatccgagtc      4680
     ggtggccggc tcagactgtc tgcgcagcca tatgaaacaa aacatcctat tttgttacct      4740
     ggattccatc acttcacaag actgcttctg acgtcgtatc accgcaagct gctacatggc      4800
     ggtatttcgc atacccttgc tgtagttcgg aatgacttct ggccaaccaa cggcaggagg      4860
     gccgtgcgca gcacaatttg gaattgccac cgctgtacac gtgttaaccc ccgaccaatt      4920
     aagcagcctg taggtcaaat acctgcagcc cgtatcacac ctagtcgtcc gttttcatca      4980
     acaggtgttg attactgcgg accagtattg gtcaaatcaa aaattcgacg ttcagctccc      5040
     accaaggcct atatagcact gttcgtatgc ttcagcacta aggctgttca tattgaactc      5100
     gtcggcgatt tgtctacgca atccttcctc tctgctttac gtagatttat tgctcgccgt      5160
     gggttacccg agcacatcta ctcggataac gccacaaact tcgccggkgc aaaacacgaa      5220
     cttcatgctc tctaccaaat gctcaataat agaaccgaaa acgctcgtat cgctaccagt      5280
     ctcgcaacga atggaatcaa ctggcacatg attccccctc gtgctcccaa cttcggcggc      5340
     ctatgggagg ccgcagtcaa ggtggctaaa aagcacctcg ttcgccaaat aggaaccagt      5400
     tcgttgctgc aagaggacct ggaaacagtg ttggtgcaaa ttgaggggtg catgaactcc      5460
     cgtcctttgg tcgcattatc ggatgacccc aacgaccttg aagcccttac wccgggacac      5520
     ttcttagtgg gctcgaatct acaagctctt cctgagccgg acctgcgaga agtgccagtc      5580
     aaccgattgg acagatacca gctagctcaa cagaaggtgc aacagttctg gtgccgatgg      5640
     acatccgagt acctgaaaga actccaacat caagctacaa tcaacccacg aaaggtcgac      5700
     ctcaaggttg gtcaagtagt gatcgtccag gatcaacagc ttccgcccat tcgctggcca      5760
     ttagcccgca tcatgcatct tcaccctggc caagacggcg tggtgcgcgt agtgaccata      5820
     cgcaccgctt cgggactctt caagaggcca acatcaaagc tctgtcttct accatccacc      5880
     atggaggacg atatcgcagg aaacatcgca gatgatccag ctaagtgaat tattttattc      5940
     tttcaatgaa ttaattagaa taagattgat ttgaaatatt catttcggtg gccggtcta       5999
//
ID   BEL-780_AA-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-780_AA-I;
KW   BEL-780_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-350
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-350
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 96-96 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 350 BP; 97 A; 75 C; 60 G; 117 T; 1 other;
     tgttaggatt agatattttt cctgaatatt atgaatttaa attccaatgt agaatccatc        60
     tccatagtat caaatttgcg aactgatcga aacgcacctt tatatagaac gcatttctat       120
     tatgtatttt tttggcggtt tcgcgcttcc tttttttgcc actmtcgctc aggtcgaccg       180
     gtcaccagtt agccatagtg aataaagcaa ccacagtgaa ctgaccatct gaattaaagt       240
     gctccctttt tgcaaataaa aatcggtttt tcgctaagta ttcgcgtcgt tgccaagtgt       300
     tcagtgatca tccgaaaatt acgcccgtga tttaaacccc gttcagaaca                  350
//
ID   BEL-781_AA-I repbase;    DNA;    INV; 5411 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-781_;
KW   BEL-781_AA-I; BEL-781_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5411
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5411
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..5380
FT                 /product="BEL-781_AA-I_1p"
FT                 /translation="MEKLVRIRNAQMVQVVGELAAAGKLAERKASFSEATE
FT                 RLEQLKELAGNFRKTQSAIEENQDDPEAVASVHNFREEFNGAYFQAKNILE
FT                 RYIADNNPDEIDSTSSSQTIIDTDLREAMKMLLITQRSLLEGQQAAAQASI
FT                 SQARGSFDPAVGEQMSNRAPCLNVRLPPISVPTFNGDRKSWRSFKDIFETT
FT                 IHNRNDLPDSLKMQYLVSYLEGSAKQLVSSFPICDANYQEAWQALTNFYDK
FT                 KKYTVFALIREFVDQPAVVTATAGSLRKLVTTSDEVVRQLNALGEEYNTRD
FT                 PWLIHLVLEKLDKESRSLWAQRIIDEENPSFEDFVKFLDNRCDALETCTAF
FT                 AKKSTNEAVKKDNMKKPVGERKLQSLHSAAGGEKCAKCSKEHPLFQCDDFK
FT                 NMDTSSKRELVKKSRLCFNCLRSSHIVKFCNSKSVCRNGDCKQRHHTLLCE
FT                 RRSEEEAKKQVQNSETESQQVSEAVVNSMVAQVPVEVHQKAFVLPTAVIRV
FT                 RTNVGDLLQVRALIDSGSEASLISEACVQKLGLPRSNGKVIVAGLGQQAAG
FT                 TTRGLVKLVITNRFNDTTVLQTSAYVLGKLTSTLPTQHCRVHPNLLDKDVQ
FT                 GNLADPAYQRPGAIDIILGSDVFLALLKPGQVKDNDGVPVAQNTIFGWIVS
FT                 GNQAIYSSNVVANVSIVNLHAELDINRTLRMFWEQEEIPKPQQLTPSEQVA
FT                 TELFRSTLTRHENGRFIVRLPFDGSKPALGESLTPAIKRLRSMEKRFRQDE
FT                 EFRKLYSEFLGEYLALGHMEEVPENELKVDSSKCFYLPHHAVVKADSTTTK
FT                 LRVVFDASCASSTGVSLNDRLLAGPNVNQDLYSVFLRFRTYQVAFSADVEK
FT                 MYRQVVVHPADRDYQRIIFRHKEDQPIKHYRLCTVTYGTKCAPYLAIAAMK
FT                 RAAEEYQHVYPEATLRIVLDTYVDDFLSGAQNVQQARQLKEQVMEILQSAG
FT                 FHLRKWTTNCPELLQEEIQDDQEPVDVQLAEQANAVKALGIQWLPTEDTFS
FT                 FKVNLNVDSVNTKRQLLSDSCKLFDPFGWLAPVTIKVKTLFQQLWLSELSW
FT                 DDSLPPAVESAWIEIKETLQQVEQIRISRFVPNYNGKIELHGFSDASETAY
FT                 AAVVYARGTNEAGEIIVNLLTAKTRVAPIRQVSLPRLELNAAALLSTLMES
FT                 IMQALNHLEVEPWAYTDSSIVLQWLSAHPRKWKTYVANRTSAILEVLPRDR
FT                 WNHVRSENNPADCASRGLTPSELVTHPLWWHGPDQLKTESESWKRVPVKEI
FT                 EDEDLLESRRLKVLHSISPTIRKNYDIEINLLERRSNYMLIVRTLAYVNRF
FT                 VLALKMENANLEPGLSPNEIYDAKTQLARAAQYASYQQEIELLYKGKELPS
FT                 KHKLAALHPFLDRQGTMRVGGRLQNSSYSYDVKHPIILPANHKVTELLLRD
FT                 IHLRNLHAGPSLLTATVNQQYWVVGLQSAVRLTVQGCTRCVRMKGKTAAQL
FT                 MGSLPVSRVMGTRAFTHVGVDYAGPLKVHASCVRGVKTTKGYIVVFVCMAT
FT                 KAVHLEVASDLSTSTFICALKRFISRRSHPNEIWSDCGTNFVGTDHWLKEL
FT                 QSARQIHNEETSRFLSNLGIKWVFNPPSAPHRGGIWEAAVKSAKKHLVAVL
FT                 GSEAATYEDLSTILTQVEACLNSRPLCPLSTNPDSYEALTPGHFLVGQPIN
FT                 LLPEPDVKHIPMNRLDKWQLLHKHTIEIWKRWRDEYVANLQPRIKWRTTEK
FT                 NVEKNQLVLVKNDNAPPTQWELARIVQLHPDSSGVVRTVTLRRGQAEYTRP
FT                 IQKICVLPTD"
XX
SQ   Sequence 5411 BP; 1496 A; 1296 C; 1389 G; 1230 T; 0 other;
     ttggtccttc gtaatcggat agtttcgcga accgggaatg gagaaactcg tgagaatccg        60
     taacgcgcaa atggtgcaag tggtcggaga gcttgcggca gccgggaaac ttgctgaaag       120
     gaaggcgtcc ttcagcgagg caacagaaag gctcgagcag ctgaaggaac ttgctggaaa       180
     cttccggaaa acacaatcag caatcgagga gaatcaagat gatccggaag ctgttgcctc       240
     cgtgcataat ttccgcgagg agtttaacgg agcgtatttt caagcgaaga acattctcga       300
     gaggtatatt gcggacaaca acccggatga aatagattcc acatccagca gccaaaccat       360
     catcgatacg gatttaagag aggcgatgaa aatgctcctt atcacacagc gtagcttgct       420
     ggagggtcaa caagcagcgg ctcaggcaag catcagtcaa gctaggggaa gttttgatcc       480
     ggcagtaggt gaacagatgt cgaatcgtgc accgtgtctg aatgtgcggc tccctccgat       540
     cagtgtgccg acattcaacg gtgatcggaa gagctggagg tcgttcaagg acatttttga       600
     aaccaccata cacaaccgga acgatcttcc ggactctctt aagatgcagt atctagtctc       660
     gtatctggag ggaagtgcga agcagttggt tagctcgttt ccgatatgcg atgccaacta       720
     tcaggaagcg tggcaagcgc tcacgaattt ttacgataaa aagaaataca ctgtatttgc       780
     tcttatccgt gaattcgtgg accagccggc ggttgtcact gccacagccg gaagcctacg       840
     taagctcgtc acaacttccg atgaagtggt tcgacaattg aacgccctag gtgaagaata       900
     caacacgcgc gacccatggt taattcatct cgtattggaa aagctcgata aagaaagtcg       960
     atcgctttgg gcgcaacgca ttatcgacga agagaatcca tcgtttgaag acttcgtgaa      1020
     gtttctggat aaccggtgcg acgctctgga aacctgcacg gcgtttgcga agaaatcaac      1080
     gaatgaagct gtgaagaaag acaacatgaa gaaaccagta ggcgagagga agttgcagtc      1140
     actgcactct gctgcaggag gagaaaagtg cgcgaaatgc tccaaggagc atccgttatt      1200
     tcagtgcgac gatttcaaga acatggacac gtcatctaaa cgcgaattgg tgaaaaaatc      1260
     gaggttgtgt ttcaactgcc tgcgttcgtc gcatatcgtg aagttttgta actctaaatc      1320
     agtgtgtcga aatggtgact gtaaacagcg acaccataca ctgctgtgcg agcggaggag      1380
     tgaagaagaa gcgaagaagc aagtgcaaaa cagtgaaacg gaatcccaac aagtgagtga      1440
     agctgtcgtc aactcgatgg tggcacaagt tccggtagaa gtacatcaga aagccttcgt      1500
     gctgcctact gccgtcattc gtgtgcgaac aaatgttggc gatctgcttc aagttcgtgc      1560
     tctcatcgat tcgggatctg aagcgtcact aatctcagaa gcttgcgtgc agaaacttgg      1620
     tctgcctcgt tcaaacggaa aggtgatagt cgccgggctc ggacaacaag cggctggaac      1680
     gactcgtggc cttgtaaagt tggtaatcac caaccggttc aacgatacaa cagttttgca      1740
     gacaagtgcc tacgtcttgg ggaaactcac atcgacactc cctactcaac attgcagagt      1800
     acatccaaac cttctagaca aggacgttca aggtaacctt gcagatccgg cgtatcaacg      1860
     gcccggagcg attgatatca tcctgggatc cgatgtcttt cttgctcttt tgaagccagg      1920
     gcaagtcaag gacaatgatg gtgttcctgt ggcacaaaac acgatctttg gctggattgt      1980
     gtcagggaat caagccattt actcgtcgaa tgttgtagca aacgtttcca ttgtcaatct      2040
     tcatgcagag ttagacatca accgtacctt gcggatgttt tgggagcagg aggagattcc      2100
     aaagccacag cagcttactc cttctgaaca ggtggccacc gagctcttca ggtctactct      2160
     cacacgtcac gagaacggac gcttcatcgt acgactaccg ttcgacggtt cgaagccagc      2220
     gctgggtgag tctctcacac cggccatcaa gcgattgcga tcaatggaaa agcgtttccg      2280
     acaggacgag gaattccgca agctatactc agagttcctc ggtgagtatc tggcacttgg      2340
     acacatggag gaagtgccag aaaatgaatt gaaggtggat agcagtaagt gcttctacct      2400
     tccgcatcac gccgtcgtca aggccgacag cacgacgacc aaactgaggg tggtcttcga      2460
     cgcctcatgc gcgtcgtcta ccggcgtgtc cctcaatgat agactcctgg caggacccaa      2520
     cgtgaatcag gatctttact cggtgttctt acgctttaga acctaccaag tagcattttc      2580
     ggcggatgtc gagaaaatgt accgccaagt ggtggtacat ccggccgacc gtgattacca      2640
     aaggatcatt tttcgtcata aagaggatca gcccatcaaa cactatcggc tgtgcactgt      2700
     gacttatgga acgaagtgcg ccccgtattt ggcaattgcg gccatgaagc gagcagctga      2760
     agaataccaa catgtgtatc ctgaagctac cctcaggatt gtattggaca cctacgttga      2820
     cgattttttg tccggtgctc agaatgtgca gcaagcaagg caactaaaag agcaagtcat      2880
     ggagatatta cagtccgctg gtttccacct gcggaagtgg acaacaaact gccccgagct      2940
     tctacaggag gaaatacagg acgatcaaga accggtagat gttcagttgg cggagcaagc      3000
     aaatgcggtg aaggcactcg gcatccagtg gctgcccaca gaagacacat tctcattcaa      3060
     ggtcaacctc aatgtggaca gcgttaacac caagagacag ctactttcag attcttgcaa      3120
     attattcgac ccgtttggct ggcttgcacc agttaccatc aaggtcaaaa cattattcca      3180
     gcaactgtgg ctcagcgaac tatcttggga cgactcacta cctccagcag tcgaatcagc      3240
     gtggatcgaa attaaggaaa cacttcaaca agtggaacag atacgcatct ctcgatttgt      3300
     gccgaactac aatggcaaga ttgagttaca tggattttcg gatgcgtccg agacagcgta      3360
     tgcagcggtg gtgtatgcca gaggaacaaa tgaagctggg gaaataattg tgaatcttct      3420
     cactgctaaa accagagtgg ctcctatcag gcaagtgtcc ttgccaaggt tggaactcaa      3480
     cgcagcagct ttactgtcga ccttgatgga atcgataatg caagcactca atcatctgga      3540
     agtcgaaccc tgggcatata cagacagcag cattgtgttg cagtggttgt ctgctcatcc      3600
     ccggaaatgg aagacgtacg tagcgaatcg tacttcagca atcttggaag ttttgccacg      3660
     tgaccgttgg aaccatgtac gaagtgagaa caacccggca gattgcgctt cacgtggtct      3720
     cacaccaagc gaattagtaa cgcatcctct ctggtggcat ggacctgatc agctgaaaac      3780
     ggaatctgaa agttggaagc gagtaccagt taaagaaatc gaagatgaag atctactgga      3840
     gtcacgacgg ttgaaggtac tgcactctat atctccaacc atccgaaaga attacgacat      3900
     cgagatcaac ctgctggagc gacgttcgaa ctacatgcta atcgtgcgca ccctagcgta      3960
     tgttaatcga tttgtattag cactcaagat ggagaacgcg aatctcgagc caggactttc      4020
     gccgaatgag atctatgacg ccaagactca actagccaga gcggcacagt atgcatcata      4080
     ccagcaggaa attgaactac tgtacaaggg taaggaattg ccatctaaac acaaattggc      4140
     tgcccttcac ccttttctcg acagacaagg gacgatgcgc gtgggtggtc ggttgcaaaa      4200
     ttcatcctac tcgtacgacg tcaaacaccc aattatcctc ccagccaatc acaaggtaac      4260
     cgagctgctg ttgcgcgaca ttcatctgcg caacctccat gcgggaccca gtctactaac      4320
     ggcaacggtc aatcagcagt actgggtggt aggattgcaa tcagcggtcc gtcttactgt      4380
     tcagggatgt actcgatgtg tgcgaatgaa aggaaagact gcagcacaac tcatgggcag      4440
     cctgcctgtg tcacgtgtga tgggtactcg agcatttacg cacgtcggcg ttgactacgc      4500
     tggccctctg aaagttcatg catcttgtgt tcgaggcgtc aagactacca agggttacat      4560
     cgtagtattt gtgtgcatgg cgaccaaagc tgtgcaccta gaggtcgcta gtgacctgtc      4620
     gacaagcacg ttcatctgtg ccctgaagcg tttcatctcc agaagatctc atccgaacga      4680
     gatatggtct gattgtggaa caaactttgt tgggactgac cactggttga aggagctcca      4740
     aagtgcaaga cagattcaca acgaagagac tagtcgattc ctttccaact tgggtatcaa      4800
     atgggtgttt aacccacctt cggctcctca tcgcgggggc atatgggagg cagcggtgaa      4860
     aagcgccaag aagcacttgg tcgccgtctt gggctccgaa gcagcaactt atgaagacct      4920
     ttcaacaatt ttgacgcagg tggaagcgtg ccttaactcg cgaccacttt gcccgctttc      4980
     aacgaatcca gacagctacg aagcgttgac ccctggtcat tttctggttg gtcaaccgat      5040
     caatctacta ccagaaccag atgttaagca cattccgatg aaccgtttgg acaagtggca      5100
     acttttgcac aagcacacga ttgaaatctg gaaacgttgg cgtgacgagt acgtcgccaa      5160
     cctgcaacct cggattaagt ggcgtacaac tgaaaaaaat gtggagaaaa atcaattagt      5220
     actggtcaaa aatgacaacg caccgcctac tcagtgggag ttggctcgta tcgtccagct      5280
     tcatccagat tcaagtggag tcgtccggac tgtaacactg cggcgtggtc aagcagagta      5340
     tacacgtcca atccagaaga tttgtgttct tccaacggat tgaggcacag gtgcctcaag      5400
     gtgggggagg a                                                           5411
//
ID   BEL-781_AA-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-781_AA-I;
KW   BEL-781_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-274
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-274
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 165-165 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 274 BP; 81 A; 70 C; 50 G; 73 T; 0 other;
     tgttcgcgac caaatgccac ccagctctat cgccctctct acccacatct ctattcgccc        60
     ctggaaggaa agcacccttg cgcaactgtc agattgcgcg aaaactgttc gagaaaaaag       120
     cataaaattc aaatatgttc aaccgtcatc ataactgtac caaccgttca aggaaacagt       180
     agcaataaag ttaagttcga tttgttaatt ataaacggtt cgggttttat ttcgatttga       240
     ttgtgttccg ccggtccagt ccaaggtcca aaca                                   274
//
ID   BEL-782B_AA-I repbase;    DNA;    INV; 6437 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-782B_;
KW   BEL-782B_AA-I; BEL-782B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6437
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6437
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..6435
FT                 /product="BEL-782B_AA-I_1p"
FT                 /translation="MDTCQACGIQTDDSLVQCDRCDSWWHFGCVGVSDSIS
FT                 EKSFVCTNCFNTTPPQPPLNQAGDLRLPPTDALSVSSRRSSISNASARARL
FT                 NLERLEVEKALAERMLNLELREQERKVELARIQKEGELERRKLEIQRAYEE
FT                 EKFRLMEEELVEAADRSLRSQQSSNSKVRQWRSRMQLGGACSTMQSPAANE
FT                 VLGDRETTTTTTTTTTAPEIQTSALPAAGSGAMNQHPIGVTSIATGAVHKH
FT                 QLNSATICGTVKSIPPPPVAPVSATQLKISEADKPLSTIVVPATGSNSIGT
FT                 SLPDQHSIVTSRPESGVPPSNFKSVPLIPGSQSHSLLTHGLRTTFSSQPLC
FT                 KEGSFRPLMDIRYSAPSCFPRPVVSWRESMPGSAIERQKPTRVMFEKGVRD
FT                 SAIGASQPTQVSPAGSYMVDIRSQPTNPAERIVSEASLGVPSSVSYTPMSK
FT                 TSTGNSFVFQQPCQNATTGPESSATTGLSFISNSHPGFQGQTGQVNGPSSS
FT                 QLAARQVMPRDLPMFSGNPEDWPVFISSFANSTQACGYTDAENLIRLQRCL
FT                 KGPALEAVKSRLLFPAAVPHVIATLETLYGKPEHLIFMLLKKVREVPAPKS
FT                 DRLETLIGFGMAVQNLCDHVEMGQQVAHLNNPTLLYELVDKLPANLKLDWA
FT                 MFKQQAPITNLRIFAQFMSRLVTAAADVTLHMDPRTTQRSKSEKPKEKNFL
FT                 GAHSGMRNAEDTPKSDFSKGRLQAQSLGSITCLVCKKPGHKVKECKEFADM
FT                 TVENRWKTIQAHSLCRTCIGAHGKRPCKSKKSCDVDGCQARHHSLLHSNRD
FT                 QTAPEMTHGIMNHHFVDRSSLFRILPVTLYANNRSVTVFAFLDDGSSRTLI
FT                 EEDLVKRLGVEGEVNPLCLQWTSNVKRVEKHSKKVSLEISGEQRKHLYQLV
FT                 DVRTVGHLDLPRQSIRYAEMVRKYPYLEGLPIRDYVDAIPKILIGNDNSHL
FT                 GAVLKIREGNPQEPIAAKTRLGWTIYGSVPGSTDRALSFHICSCESDSSLH
FT                 ELVKQYFSVESLGVKVVDGPESQEIQRANRLLKSSTRRIGQRFETGLLWKF
FT                 DQMEFPDSYQMAIKRMLCLERRMAKDPAIGESVKKQMVEYQEKGYIHRATE
FT                 AELNEADPRRIWYLPLGVALNPKKPNKIRIFCDAAASVGGVSLNSMLLKGP
FT                 DFLSSLPAVLFGFREKRYAICADIQEMFHQIRIKKEDRHAQRLLWRDSPDD
FT                 DPAVYLMDVATFGSTCSPCSAQYVKNLNAAEHAEEFPAAANAIIKKHYVDD
FT                 YLDSAETIDEAVQLAKEVRTVHSRAGFHIRNWMSNAEEVLRRVGEPSKATS
FT                 KQLNLDKSNTTERILGMLWCPERDEFTYSTSMEVNSQLPTKRTVLRAVMSL
FT                 FDPLGLMSFFIIHGKVLIQDIWRAKTDWDEPIPEKLCHRWWQWTKLCGQLD
FT                 RIRIGRCYFLNCGVEQCESLQLHIFVDASEGAYACVAYFRAIYGGKVQCAL
FT                 VAAKSKVAPLKSLSIPRMELQAAVLGVRLQKLIRQTHSLPISQCFYHTDSK
FT                 NVLAWINSDHRNYRQYVAVRIGEILTESDEREWRWVPSKENVADDATKWGS
FT                 GPSFSSTSRWFRGPDFLYRSESEWPVDKQVRYETLEEIRVCLIHQESSCSR
FT                 TIDWSRFSAWNRLLRSVAYVRRYLRNLRKKLQNESLQHGMLTQEELSAAET
FT                 CIWRQVQKEAYADEIRAIECANLACEKGSVKLDRTSNIRKLSPFVDITGVL
FT                 RSESRLQKAHFASYDTKCPIILPKDNPVTMLLVELYHRKYLHANGETVLNE
FT                 MRQRFQIAGLRALIRTVTKRCNLCRIRNANPLVPRMAPLPTARLQAYVRPF
FT                 SYVGLDYFGPLAVRVGRATVKRWIALFTCLTIRAVHLEVVHSLSTESCKMA
FT                 IRRFVGRRGAPVEIYSDNGTNFVGANNDLRRELANITADLAETFTNTSTKW
FT                 RFIPPAAPHMGGSWERLVRSIKTALDAMYTSRTPNEETFATLIIEAEAVVN
FT                 SRPLTFVPVDPVLQEALTPNHFLLMSSSGVTQPAKTLEEAKQACRSSWNLG
FT                 RVMVDAFWRRWIREYLPTIARRTRWFEDVKSIEVGDLVIVVSESTRNGWTR
FT                 GRILEVVRGSDGRVRQAVVQTSTGVIRRPISKLARLDIDGNLGQLSSGQSY
FT                 GSG"
XX
SQ   Sequence 6437 BP; 1740 A; 1484 C; 1689 G; 1524 T; 0 other;
     atctaaaaga ttgattctat atcgatcact ttagcacacg caatggacac gtgtcaggca        60
     tgcggtatcc agacggatga ttccttggtc cagtgtgacc gatgtgattc ttggtggcat       120
     ttcgggtgcg taggagtgag tgatagcatc agtgagaaga gtttcgtctg cacgaactgt       180
     tttaacacta ctcctccgca accaccgttg aaccaagctg gagatttgag attgccaccc       240
     accgatgccc tttccgtatc gtccagaaga tcttcgatct cgaatgcgag tgctcgagct       300
     cgacttaatc tggaacggct cgaggtcgag aaagctctag ccgagaggat gttaaatttg       360
     gaacttcggg agcaagaacg gaaagtcgaa ctcgcacgca tacagaagga gggagaattg       420
     gaacgcagaa agctggaaat acagagggcc tacgaagagg agaagtttcg cttgatggag       480
     gaagagctgg tagaagctgc agatagaagt ctacgttccc agcagagcag taatagtaag       540
     gtacgacagt ggaggagtcg aatgcaactc ggcggggcct gttcgacgat gcaatcccct       600
     gcagcgaatg aggttctggg cgatcgtgag acaacgacca ccacaacgac gactactacg       660
     gcacctgaga tacagacttc cgcgctaccc gcagctggta gtggagctat gaaccagcat       720
     ccgatcggtg tgacgagtat tgcaactggg gcagtacaca agcatcaact gaacagcgca       780
     accatatgtg gaacggtaaa gtctatccca cccccacctg tggctccggt aagtgcaacg       840
     caattaaaaa tctctgaagc tgataagccg cttagtacta tagttgtacc agctacaggt       900
     agtaacagta tagggactag tttgccagat caacatagca ttgtaactag taggccagag       960
     tcaggtgttc ctccaagcaa tttcaaatct gtccctctga ttcccggttc acaatcacat      1020
     tcattactta cccacggctt gagaaccacg ttttcttccc aacctctttg taaggaaggc      1080
     tcattccggc ctttgatgga tattagatat tctgctccga gctgttttcc gcgtccggtc      1140
     gtttcgtggc gagagtcaat gcccggtagt gcgatcgaac gacaaaagcc tacgcgagtg      1200
     atgtttgaaa aaggtgttcg tgattcagca attggtgcgt cgcagccaac tcaagtcagt      1260
     ccagcgggat catatatggt ggacattcgt tcgcagccga ctaatccggc agaacgaata      1320
     gtgagcgaag cgtctctagg agttccgagt tcggtgtcct acacaccgat gagcaaaacg      1380
     tcaaccggaa acagtttcgt cttccagcag ccatgccaga atgcaactac tggaccggaa      1440
     tcgagtgcaa ctaccggatt atccttcatc tctaatagtc accctggttt tcagggtcaa      1500
     actggccaag tgaacggccc ctcttcatct cagttggctg ccaggcaagt tatgcccagg      1560
     gatttgccaa tgttttccgg aaacccggag gattggccag tattcataag ttcgtttgcc      1620
     aactctacac aagcttgtgg gtacacggac gccgaaaacc taatacgact gcagcgatgt      1680
     ctcaaaggac cagcgttgga ggccgtgaag agtcgcctgc tgtttcctgc tgcagttcca      1740
     catgtcatcg ccactttgga gactttgtat ggaaagccgg aacatctaat tttcatgttg      1800
     ctgaagaagg ttcgggaggt ccctgcacca aaatctgata ggctggagac tctcatcgga      1860
     tttggaatgg cagtgcaaaa cctgtgtgat cacgtggaga tgggacaaca agtagcacac      1920
     ctgaacaatc ccactcttct gtacgagcta gtggataagc tgccagccaa tctaaaattg      1980
     gactgggcga tgttcaagca gcaagctcca attacaaact tgcgaatttt cgcgcagttt      2040
     atgtcgagac tagtgacagc agcggctgat gttacacttc atatggatcc aagaacgacc      2100
     cagcgttcaa aatctgagaa acccaaagaa aagaacttct tgggtgctca tagcggaatg      2160
     aggaatgcgg aagacactcc gaagtcagac ttttcgaaag gacggcttca ggcccagtcg      2220
     ctaggttcaa ttacgtgcct ggtatgtaag aaacctggcc acaaggttaa ggaatgtaag      2280
     gaatttgcag acatgaccgt ggagaaccgt tggaaaacta tccaagctca ctctctttgt      2340
     cgaacgtgca ttggggccca tgggaaacga ccttgcaagt ccaaaaaatc gtgtgacgtg      2400
     gacgggtgtc aagcaagaca tcattcgctt cttcattcga accgggacca aacagccccg      2460
     gaaatgacgc acggaatcat gaaccatcac ttcgtggatc gttccagtct tttcagaatt      2520
     ctgccggtta cgctgtatgc caacaatcga tctgttacgg tgtttgcctt cctcgacgat      2580
     gggtcgtcga gaacactgat tgaagaggac cttgtcaagc gactgggagt ggaaggagaa      2640
     gtgaatccac tgtgcctgca gtggacttcg aatgttaaaa gagtggagaa acattcaaag      2700
     aaggttagcc tagagatttc tggagagcag cgaaagcatc tctatcagct ggtcgatgtc      2760
     cgaaccgtag gtcacctaga tctaccacga cagtcaattc gctatgcgga aatggtgagg      2820
     aagtaccctt acttggaagg attgcccata agggattatg tcgacgctat tcccaaaata      2880
     ctcatcggca acgacaactc acatcttggt gccgttttga agattcgcga aggaaaccct      2940
     caggaaccaa ttgccgcgaa aacccgtttg gggtggacca tttacggatc ggtacccggt      3000
     agcactgatc gtgctttgag ttttcacatc tgcagctgtg agtcggattc atcgcttcat      3060
     gagctggtga aacaatattt ttccgtagaa agtctggggg tgaaagtcgt cgacggacca      3120
     gagtcgcaag agatccagag agccaaccgc ttactgaaga gttcaacgag gcggattggg      3180
     cagcgttttg aaaccggcct actatggaag ttcgaccaga tggaattccc tgacagttat      3240
     caaatggcca tcaagcgaat gctgtgtctt gagcggcgca tggcgaaaga tccagccata      3300
     ggtgaaagcg ttaagaaaca gatggtagaa taccaggaga aggggtatat ccatcgggcg      3360
     acagaagcag aattgaatga agcggatcct agaagaattt ggtatctccc tctaggggta      3420
     gctctaaacc ccaagaaacc gaataagatt cgaatatttt gcgatgcggc tgcttctgtg      3480
     ggcggagtat cattgaattc catgctttta aaggggccag atttcctcag ctctctacct      3540
     gctgttttat tcggattcag agagaaacgc tatgccatct gtgctgacat tcaggagatg      3600
     tttcatcaga tcagaatcaa gaaagaggac agacatgctc aacgactgtt gtggcgtgat      3660
     tctccggatg atgatccagc agtttacctc atggacgtcg ctactttcgg ctctacctgc      3720
     tctccgtgtt cagcgcagta cgtcaagaac ctcaatgcgg ctgaacatgc tgaagaattt      3780
     ccggcggccg ctaatgctat aattaaaaag cactacgtcg acgattatct tgacagtgct      3840
     gaaaccatcg acgaagcggt gcaactagcg aaggaagttc gaaccgttca ttcccgagct      3900
     ggtttccata ttaggaactg gatgtccaac gcagaggaag ttctccgacg ggtcggggaa      3960
     cccagcaaag ccacgtcgaa acagctaaac ctggataaaa gcaacacaac tgaacgtatt      4020
     ctagggatgc tgtggtgtcc cgagagggat gagttcacct actccacgag catggaggtg      4080
     aattctcaac taccaaccaa gcgcacagtt ctgcgggcgg tcatgagtct gttcgacccg      4140
     ctaggattaa tgtccttttt tattattcac ggcaaggtgc tcattcaaga catctggaga      4200
     gcgaaaacgg attgggatga acctattccg gagaagttat gtcacagatg gtggcagtgg      4260
     acaaaactat gcggtcagct agatcgtatt cggattggac gttgctattt tctgaactgc      4320
     ggcgttgaac aatgtgagtc actacaactt cacatcttcg tggatgcaag tgaaggagcc      4380
     tatgcttgcg tagcgtactt cagagccatt tatggcggca aggtacaatg tgccttggtg      4440
     gctgcaaaat ccaaagtagc gccgttgaaa tccctgtcaa ttccacgtat ggaactgcaa      4500
     gccgctgttc taggagtacg cttgcagaag ctgattcgtc aaacgcacag cctacctatc      4560
     agccaatgct tctaccacac ggactccaaa aacgtattag cgtggatcaa ctctgatcac      4620
     cgcaactacc gtcagtatgt tgccgtgaga attggggaga ttttgaccga atctgatgaa      4680
     agagaatggc gctgggttcc atcgaaagaa aacgttgcgg acgatgctac gaagtggggc      4740
     agtggaccaa gcttttcctc tacaagccgg tggtttcgag gacccgattt tttgtatcgt      4800
     tcggaaagtg aatggccggt agacaaacag gtcagatacg aaactttaga agagatccgg      4860
     gtatgtctga tacaccagga aagcagttgt tcgagaacga tcgattggag tcgcttttcg      4920
     gcatggaatc gactgttgcg tagtgtggcc tacgtgcgga ggtatctgag gaacctgcgg      4980
     aagaaactgc aaaacgaatc tctacaacac ggcatgctga cacaagaaga gctatcagca      5040
     gcagagactt gtatttggcg gcaagtacaa aaggaagcct atgcagatga aattcgtgca      5100
     atagagtgtg caaacctggc ttgtgagaaa ggatcagtta aactggatcg gactagtaat      5160
     atacgcaaac tatctccgtt cgtagacatc actggagtgc tgcgctcaga aagtcgactt      5220
     caaaaggcac attttgcgtc ctacgataca aaatgcccta taatacttcc caaggataac      5280
     ccagtcacga tgttactcgt ggagttgtac catcgaaaat atcttcatgc caatggtgaa      5340
     acggttctca atgagatgcg gcagcgattc caaattgccg gtcttagagc gttgatacgt      5400
     acagtaacaa aacgctgcaa tctgtgtcgg attcgaaatg ctaatccttt ggttccacga      5460
     atggcgccac ttcccacggc tagacttcag gcttacgtcc ggcctttttc gtacgtagga      5520
     ctggactatt tcggtccact agcggttcgt gttggccgag ctacggtaaa aaggtggatt      5580
     gctttgttta cgtgcctgac catccgcgcc gtacacctgg aagtggtcca ctcactcagt      5640
     accgaatcct gcaagatggc tattcgtcgc tttgtgggcc ggcgtggggc tcctgtagaa      5700
     atatacagcg acaatggcac caactttgtc ggtgcaaaca atgaccttcg tcgggagttg      5760
     gccaacatta ctgcagatct cgccgaaact ttcaccaaca cttctacgaa atggcgcttt      5820
     attccaccgg cggcgcccca catgggcggc tcgtgggaaa ggcttgtgag atcgattaag      5880
     acagcactgg atgcaatgta tacttcgagg actccgaatg aggaaacgtt tgcaaccctg      5940
     ataattgaag cggaagctgt agtaaactct cgcccattga cttttgttcc tgttgatcct      6000
     gttctgcaag aggctctgac tccgaaccac tttttattga tgagttcgag cggagtaaca      6060
     caaccagcga aaacattaga ggaagctaag caagcatgca gaagcagctg gaacctgggt      6120
     cgggtcatgg ttgacgcatt ttggcgtcgt tggatacgcg agtatctacc aacgattgct      6180
     cgacggacta ggtggttcga ggacgtgaaa tcaatagagg tgggtgactt ggtgatcgtc      6240
     gtatccgaaa gtactagaaa tggatggaca agaggacgaa tacttgaagt ggttcgagga      6300
     agtgatggaa gagtacggca ggcagtcgtg cagacctcta cgggagtaat tcgtcggcca      6360
     atctcgaagc tagctcggct agatattgat ggtaaccttg gccagttgag ttccggacaa      6420
     agttacgggt cggggag                                                     6437
//
ID   BEL-782B_AA-LTR repbase;    DNA;    INV; 526 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-782B_AA-I;
KW   BEL-782B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-526
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-526
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 172-172 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 526 BP; 191 A; 92 C; 90 G; 153 T; 0 other;
     tgttgccgac ttgggagtca ctgaggaata tcccttgctt gaactacaac gcacggagca        60
     tcacgctacc taacgttgat ggtttacaca ttgtgttttc tatagcactg gagaacgata       120
     ataggtcatt gttaaatctt cagataaaca gaaatcacgt cgatcaaatt gataaattga       180
     attcctggat taaaattata tcagttgcat taaaacttat aaactactgt gaatttaaaa       240
     acttatacta cattgtttct tataatagtg agtaaaaact aatgaaatta taactagaaa       300
     tcctaactaa ttatcatcca ttgaagattg aagatctata tacagtagga agattagttg       360
     ggacgaaatc cagagcgagg ttagactcaa tgtgagtatc gaaaatcagc aattgaattt       420
     atataaaact aattaaataa acagctttta gcaactgtcg ctactgatga accaacgaag       480
     ttcgcttaaa agtggtccga accgtccaaa cgctcagtcc ccaaca                      526
//
ID   BEL-782_AA-I repbase;    DNA;    INV; 6428 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-782_;
KW   BEL-782_AA-I; BEL-782_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6428
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6428
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 263-263 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..6426
FT                 /product="BEL-782_AA-I_1p"
FT                 /translation="MDKCQACGIQTDDSLVQCDRCDSWWHFGCVGVSDSIS
FT                 EKSFVCTNCFNTTPPLPPLNQAGDLRLPPTDALSVSSRRSSISNASARARL
FT                 NLERLEVEKALAEKMLNLELREQERKVELARIQKEGELERRKLEIQRAYEE
FT                 EKFRLMEEELVEAADRSLRSQQSSNSKVRQWRSRMQLGGACSTMQSPAANE
FT                 VLGDRETTTTTTTTTTAPEIQTSALPAANSGAMNQHPFGVTSIATGAVHKH
FT                 QLNSAPIGETVKSIPPPPLAPVSATQLKSSEADKPLSTIVIPATGSNSIGT
FT                 CLPGQHSIVTSRPESGVPPSNFKSVPLIPGSQSQSLLTHGWRTTFSSQPLC
FT                 GEDSFRPLTDSRGSVPSCFPRPVVSWRESMPGNAIERKKPTRVMFEKSVCD
FT                 SAIGASQPTQVSPAGSDMVDIRLQPINRLVSEASLGVPSSVSYTPISNIPT
FT                 GNSFAFQQPCQNASTGPESSTTTGLSFISNSHPGFQGQAGQVNGPSSTQLA
FT                 ARQVMPRDLPMFSGNPEDWPVFISSFANSTQACGYTDAENLIRLQRCLKGP
FT                 ALEAVKSRLLFPAAVPHVIATLETLYGKPEHLIFMLLKKVREVPAPKSDRL
FT                 ETLIGFGMAVQNLCDHVEMGQQVAHLNNPTLLYELVDKLPANLKLDWAMFK
FT                 QQAPITNLRTFAQFMSRLVTAAADVTLHMDPRTTQRSKSEKPKEKNFLGAH
FT                 SGMRNAEDTPKSDVSQGRLQAQSLGPITCLVCKKPGHKVKECKEFADMTVE
FT                 NRWKTIQAHSLCRTCIGAHGKRPCKSKKSCDVDGCQARHHSLLHSNRDQTA
FT                 PEMTHGIMNHHFVDRSSLFRILPVTLYANNRSVTVFAFLDDGSSRTLIEED
FT                 LVKRLGVKGEGNPLCLQWTSNVKRVEKNSKKVSLEISGDQQKHLYQLVDVR
FT                 TVGHLDLPRQSIRYAEMVRKYPYLEGLPIRDYVDAIPKILIGNDNSHLGAV
FT                 LKIREGNPQEPIAAKTRLGWTIYGSVPGNTDHALSFHICSCETDSSLHELV
FT                 KQYFSVESLGVKVVDGPESQEIQRANRLLKSSTRRIGQRFETGLLWKFDQI
FT                 EFPDSYQMAVKRMLCLERRMAKDQATGESVKKQMAEYQEKGYIHRATEAEL
FT                 KDADPRRIWYLPLGVALNPKKPEKIRIFCDAAATVDGVSLNSMLLKGPDFL
FT                 SSLPAVLFGFREKRYAICADIQEMFHQIRIKKEDRHAQRLLWRDSPEDDPA
FT                 VYLMDVATFGSTCSPCSAQYVKNLNAAEHAEEFPAAANAIIKKHYVDDYLD
FT                 SADTIDEAVQLAKEVRTVHSRGGFHIRNWMSNAEEVLRRVGEPSKATSKQL
FT                 NLDKSNTTERILGMLWCPEKDEFTYSTNMEVNSQLPTKRTVLRAVMSLFDP
FT                 LGLMSFFIIHGKVLIQDIWRAKTDWDEPIPEKLCHRWWQWTKLCGQLDRIR
FT                 IQRCYFPNCGGEKCESLQLHIFVDASEGAYACVAYFRAKYGGKVQCALVAA
FT                 KSKVAPLKSLSIPRMELQAAVLGVRLQKMIRQSHRLPLNQCFYHTDSKNVL
FT                 AWINSDHRNYRQYVAVRIGEILTESEEKEWRWVPSKENVADDATKWGSGPS
FT                 FSSTSRWFRGPDFLYRSESEWPVDKQARYETSEEIRVCLIHQEGSCSRTID
FT                 WSRFSVWNRLLRSVGYVRRYLSNLRKQLQNESLQYGMLTQEELSAAENCIW
FT                 RQVQKEAYADEIRALERANLACEKRSVRLDRSSKIRQLSPFVDITGVLRSE
FT                 SRLQKAPFVSYDTKCPIILPKDNPVTMLLVESYHRKYLHANGETVLNEMRQ
FT                 RFQILGLRALVRTVTKRCNLCRIRCATPSVPRMAPLPAARLQAYVRPFSYV
FT                 GLDYFGPLAVRVGRATVKRWIALFTCLTIRAVHLEVVHTLSTESCKMAIRR
FT                 FVGRRGAPLEVHSDNGTNFVGANNDLRRELANITADLAETFTNTTTKWRFI
FT                 PPAAPHMGGSWERLVRSIKTALNAMYTTRIPNEETFATLIIEAESVVNSRP
FT                 LTFVPVDPRQQEALTPNHFLLMSSSGVTQPAKTLEEAKLACKSSWNLCRVM
FT                 IDSFWHRWIREYLPTIARRTRWFEDVKPIEDGDLVIVVSESTRNGWTKGRI
FT                 LEVIRGSDGRVRQAVVKTSSGVIRRPIAKLARLDVGGNIGHWSSGQSYGSG
FT                 "
XX
SQ   Sequence 6428 BP; 1741 A; 1477 C; 1697 G; 1513 T; 0 other;
     atctaaaaga tcgattcttt atcgatcact ttagcacacg caatggacaa gtgccaggca        60
     tgcggtatcc agacggatga ttccttggtc cagtgtgacc ggtgtgattc ttggtggcat       120
     ttcgggtgcg taggagtgag tgatagcatc agtgagaaga gtttcgtctg cacgaactgt       180
     tttaacacta ctcctccgct accaccgttg aaccaagctg gagatttgag attgccaccc       240
     accgatgccc tttccgtatc gtccagaaga tcttcgatct cgaatgcgag tgctcgagct       300
     cgacttaatc tggaacggct cgaggtcgag aaagctctag ccgagaagat gttaaacttg       360
     gaacttcggg agcaagaacg gaaagtcgaa ctcgcacgta tacagaagga gggagaattg       420
     gaacgcagga agctggaaat acagagggcc tacgaggagg agaagtttcg cttgatggag       480
     gaagagctgg tagaagctgc agatagaagt ctacgttccc agcagagcag taatagtaag       540
     gtacgacagt ggaggagtcg aatgcaactc ggcggggcct gttcgacgat gcaatcccct       600
     gcagcgaatg aggttctggg cgatcgtgag acaacgacca ccacaacgac gactactacg       660
     gcacctgaga tacagacttc cgcgctaccc gcagctaata gtggagctat gaaccagcat       720
     ccgttcggtg tgacgagtat tgcaactgga gcagtacaca agcatcaact gaacagcgca       780
     cccataggtg aaacggtaaa gtctatccca cccccacctt tggctccggt aagtgcaacg       840
     caattaaaga gttctgaagc tgataagccg cttagtacta tagttatacc agctacaggt       900
     agtaacagta tagggacttg tttgccaggt caacatagca ttgtaactag taggccagag       960
     tcaggtgttc ctccaagcaa tttcaaatct gtccctctga ttcccggttc acaatcacaa      1020
     tcattactta cccacggctg gagaaccacg ttttcttccc aacctctttg tggtgaagac      1080
     tcattccggc ctttgacgga tagtaggggt tctgttccga gctgttttcc gcgtccggtc      1140
     gtttcgtggc gagagtcaat gcccggtaat gcgatcgaac gaaaaaagcc tacgcgtgtg      1200
     atgtttgaaa aaagtgtttg tgattcagcg attggtgcgt cgcagccaac tcaagtcagt      1260
     ccagctggat cagatatggt ggacattcga ttgcagccga ttaatcgact agtgagcgaa      1320
     gcgtctctag gagttcccag ttcggtatcc tacacaccga taagcaacat accaaccgga      1380
     aacagtttcg cttttcagca gccatgccag aatgcaagta ctggaccgga atcgagcaca      1440
     actaccggat tatcattcat ctctaacagt caccctggat ttcagggtca agctggccaa      1500
     gtaaacggcc cctcttcaac tcagttggct gccaggcaag ttatgcccag ggatttgcca      1560
     atgttttcgg gaaacccgga ggattggcca gtattcataa gttcatttgc caactctaca      1620
     caagcttgtg ggtacacgga cgccgaaaac ctaatacggc tgcagcgatg tctcaaagga      1680
     ccagcgttgg aggccgtgaa gagtcgcttg ctgtttcctg ctgcggttcc acatgtcatc      1740
     gccactttgg agactttgta tggaaaaccg gaacatctaa ttttcatgtt gctgaagaag      1800
     gttcgggagg tccctgcacc aaaatctgat aggctggaga ctctcatcgg atttggaatg      1860
     gcagtgcaaa acctgtgtga tcacgtggag atgggacaac aagtagcaca cctgaacaat      1920
     cccactcttc tgtacgagct agtggataag ctgccagcca atctaaaatt ggactgggcg      1980
     atgttcaagc agcaagctcc aattacaaac ttgcgaactt tcgcgcagtt tatgtcgaga      2040
     ctagtgacag cagcggctga cgttacactt catatggatc caagaacgac ccagcgttca      2100
     aaatctgaga aacccaaaga aaagaacttc ttgggagctc atagcggaat gaggaatgcg      2160
     gaagacacac cgaagtcaga cgtttcgcaa ggacggcttc aggcccagtc gctaggtcca      2220
     attacgtgcc tggtatgtaa gaaacctggc cacaaggtta aggaatgtaa ggagtttgca      2280
     gacatgaccg tggagaaccg ttggaaaact atccaagctc actctctttg tcgaacgtgc      2340
     attggggcgc atgggaaacg accttgcaag tccaaaaaat cgtgtgacgt ggacgggtgt      2400
     caagcaagac atcattcgct tcttcattcg aaccgggacc aaacagcacc ggaaatgacg      2460
     cacggaatca tgaaccatca cttcgtggat cgttccagtc ttttcaggat tctgccggtt      2520
     acgctgtatg ccaacaatcg atctgttacg gtgtttgcct tcctcgacga tgggtcgtcg      2580
     aggacactga ttgaagagga tctcgtcaag cgactgggag tgaaaggaga agggaatccg      2640
     ttgtgcctac agtggacttc gaatgttaag agagtggaga aaaattcaaa gaaggttagt      2700
     ctggagatat ctggtgacca gcaaaagcat ctctatcagc tggtcgatgt ccgaaccgta      2760
     ggtcacctag atctaccacg acagtcaatt cgctatgcgg aaatggtgag gaagtaccct      2820
     tacttggaag gattgcccat aagggattat gtcgacgcta ttcccaaaat acttatcggc      2880
     aacgacaact cacatcttgg ggccgttttg aaaattcgcg aaggaaaccc tcaggaaccc      2940
     attgccgcga aaacccgttt ggggtggacc atttacggat cggtacccgg taacactgat      3000
     catgctctga gttttcacat ctgtagctgt gagacggatt catcgcttca tgagctggtg      3060
     aaacaatact tttccgtaga aagtctgggg gtgaaagtcg tcgacggacc agagtcgcaa      3120
     gagatccaga gagccaatcg cttactgaag agttcaacga ggcggattgg gcagcgtttt      3180
     gaaaccggcc tactatggaa gttcgaccag atagaattcc ccgacagtta tcaaatggcc      3240
     gtcaagcgaa tgctgtgtct tgagcggcgc atggcgaaag atcaagccac tggtgaaagc      3300
     gttaagaaac agatggcaga ataccaggaa aaggggtata tccaccgagc gacagaagca      3360
     gaattgaaag atgcggatcc tagaagaatt tggtatctcc ctctaggggt agctctgaac      3420
     cccaagaaac cggagaagat tcgaatattt tgcgatgcgg ctgctactgt ggacggagta      3480
     tctttgaatt ccatgctttt aaagggacca gattttctta gctctctacc tgctgtttta      3540
     ttcggattta gagagaaacg ctatgccatc tgtgctgaca ttcaggagat gtttcatcag      3600
     atccgaatca agaaagagga cagacatgct caacgactgt tgtggcgtga ctctccggag      3660
     gatgatcccg cagtttacct catggacgtc gcaacttttg gctctacctg ctctccgtgt      3720
     tcggcgcagt atgtcaagaa cctcaatgcg gccgaacatg ctgaagaatt tccggcggct      3780
     gctaatgcca taattaaaaa gcactacgtc gacgattatc ttgacagtgc agataccatc      3840
     gacgaagcag tgcaactggc gaaggaagta agaaccgttc attcccgagg aggttttcat      3900
     attaggaact ggatgtccaa cgcagaggaa gttctccgac gggtcgggga acccagcaaa      3960
     gccacgtcga aacagctaaa cctggataaa agcaacacaa ctgaacgtat tctaggaatg      4020
     ctgtggtgtc ccgagaagga tgagttcaca tactccacga acatggaagt gaattctcaa      4080
     ctaccaacca agcgcacagt tctgcgggcg gtcatgagtc tgttcgaccc gctaggattg      4140
     atgtccttct ttatcattca cggcaaggta ctcattcaag acatctggag agcgaaaacg      4200
     gattgggatg aacctatccc ggagaagtta tgtcatagat ggtggcagtg gacgaaacta      4260
     tgcggtcagc tagatcgtat tcggattcag cgttgctatt ttccgaactg cggcggtgaa      4320
     aaatgtgagt cactacaact tcatatcttc gtggatgcaa gtgaaggagc ctatgcttgc      4380
     gtagcgtact ttagagccaa gtatggcggc aaggtgcaat gtgctttggt ggctgcaaaa      4440
     tccaaagtag cgcctttgaa atccctgtca attccgcgta tggaactgca agccgctgtt      4500
     ttgggagtac gcttgcagaa gatgattcgt caatcgcaca ggctaccgct taaccaatgc      4560
     ttctaccaca cggactccaa aaacgtatta gcgtggatca actctgatca ccgcaactac      4620
     cgtcaatatg ttgccgtgag gattggggag attttgaccg aatctgaaga aaaagaatgg      4680
     cgctgggttc catctaaaga aaacgttgcg gacgatgcta cgaagtgggg tagtggacct      4740
     agcttctcct ctactagccg atggtttcgg ggacccgatt ttttgtatcg ttcggaaagt      4800
     gaatggccgg ttgacaaaca ggccagatac gaaacttcag aagagatccg ggtatgcctg      4860
     atacaccagg aaggcagttg ttcaagaacg attgattgga gtcgcttttc ggtatggaat      4920
     cgactgttgc gtagtgtcgg ctacgtgcgg aggtatctga gcaacctgcg gaagcagctg      4980
     caaaacgaat ctctacaata cggaatgctg acacaggaag agctttcagc ggcagagaat      5040
     tgtatttggc ggcaagtaca aaaggaagca tatgcagatg aaattcgcgc cctagagagg      5100
     gcaaatctgg catgtgagaa gagatcagta agattggatc gcagcagtaa gatacgtcaa      5160
     ctatctccgt tcgtagacat cactggggtg ctacgctcag aaagtcgact tcaaaaggcg      5220
     ccttttgtgt catacgatac aaaatgcccc ataatacttc ccaaggataa cccagtcacg      5280
     atgttgcttg tagagtcgta ccatcgaaaa tatcttcatg ccaatggtga aacggtcctt      5340
     aatgagatga gacagcgatt ccaaatttta ggacttagag cgttggtacg tacagtaaca      5400
     aaacgttgca atctgtgccg gattcggtgt gctactcctt cggttccacg aatggcgccg      5460
     cttcccgcgg ctagacttca ggcttacgtc cggccgtttt catacgtagg actggactat      5520
     ttcggtccac tagcggttcg tgttggtcga gctacggtaa aaaggtggat tgctttgttt      5580
     acttgcctga ccatccgcgc cgtacacctg gaagtggtcc acacactcag tacggaatcc      5640
     tgcaagatgg ctattcgtcg tttcgtgggc cggcgtgggg ctcctctaga agtgcacagc      5700
     gacaatggca ccaactttgt cggtgcaaac aacgaccttc gtcgagagtt ggccaacatt      5760
     acggcagatc tcgccgaaac tttcaccaac actactacga aatggcgctt tattccaccg      5820
     gcggcgcccc acatgggcgg atcgtgggaa aggctagtga gatcgataaa gacggccttg      5880
     aatgcaatgt acacgacgag gattccgaat gaagaaacct ttgcaacttt gatcattgaa      5940
     gcggaatcgg ttgtaaattc tcgcccactg actttcgttc ctgttgatcc aaggcagcaa      6000
     gaggctttga ctcccaatca ttttttattg atgagttcga gcggagttac acaaccggcg      6060
     aagacactgg aagaagctaa actagcatgt aaaagcagct ggaacttatg tcgtgtcatg      6120
     attgattcat tctggcatcg gtggatacgc gagtatctac ccacgattgc tcgacgcact      6180
     aggtggttcg aggacgtgaa acccatagag gatggtgact tggtgatcgt cgtatccgaa      6240
     agtactcgga acggatggac gaaaggtcga atacttgaag tgattcgagg gagtgacgga      6300
     agagtgcggc aggcagtcgt gaagacctct tcaggagtga ttcgtcgccc aattgcgaag      6360
     ctagctcggc tggatgttgg tggtaacatt ggccattgga gttccggcca aagttacggg      6420
     tcggggaa                                                               6428
//
ID   BEL-782_AA-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-782_AA-I;
KW   BEL-782_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-518
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-518
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 97-97 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 518 BP; 174 A; 97 C; 102 G; 145 T; 0 other;
     tgttgccgac ttgggaatca ctgtcgaaga ccccccaact gagcaacaac gattgacgca        60
     tcgttctacc taacggcgat cgacctagga aggtaggcca cgggaacaga ttgggatgga       120
     ttatccattg tttgattagc ctcacgcaga taaaagtgta gcacaaggag ttgttttttt       180
     tccttgtatt tgctaaaatt gaattaaaac ttacacacta cgttaaaaat tgctgaactt       240
     aactacgttt tccttaaaaa tagtaagtaa aacttatgaa ctatgactag aatagatatt       300
     aattaccatg caatatagat tgaaggaacg tacaggcagc aggacctatt ttgttgagag       360
     gacctagagg agagtgaggt tagactcgat gtaagtatta caattaagct ataatatgct       420
     gaactaataa aatttatagc ttttagcaac ttcgatatcc cacaaaaacg agttcgctta       480
     aaagtggtcc gaaccatctg aacactctgt cctcaaca                               518
//
ID   BEL-783_AA-I repbase;    DNA;    INV; 6328 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-783_;
KW   BEL-783_AA-I; BEL-783_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6328
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6328
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 249-249 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           621..5984
FT                 /product="BEL-783_AA-I_1p"
FT                 /translation="MAPGLREYYRLERFYTNTLANAKQFMDGYDSEQHSGQ
FT                 LEGWKQRIEGLFKDFQTNRLAIEVLEDVEDDGSIRGGARDDDEQDAVDEKH
FT                 RLIHQRFELDYVLISSFLTNEIRKLQLGNPPNPIPQATEHSRVKLPEVKLP
FT                 SFDGTISEWITFRDSFKSLIDSNQQLTPFDKFSYLVASLTKDARKVVESIE
FT                 LSAANYPVAWQLLEKRFENKKLILKTYLDALFAIEPMKKESYDSLLRLVSE
FT                 FERNLSLIDKMGFPTENWSVILAHMVCSRLDPSTLKQWESHYRSTDVPEYK
FT                 DLITFLHGHLSVLQSLPPSKSQSSEFSKMDQHRPLKSKINTVHTVTSPATS
FT                 SCPFCSKSPHSPFKCDTFQGLSVPQRFDLVKKKNLCINCFSPSHMLRSCPS
FT                 STCRVCNQKHHTMLHQTSNDRPSAPSKPIAPRSNPVPPESQTISNQSSSQS
FT                 NPSSSSSSETQKPSSSASSLVSTTVVAAPRSAPATVLLQTAIIKVFSSNGH
FT                 VQWARALLDPASQLNLITENLVQRLKLRRYQCHQEIGGVGNSAIVSSHAVL
FT                 VRMESHCTDFAVEQPCHILRKITRDLPNRSIDSSPWTIPSNIILADPKFHE
FT                 PGPIDLLLGMELYYDLLLEGFTKLGPEKPILQNTVFGWVASGKIGSSPPER
FT                 VPKVAHVCSRQPLDELIARFWEIESCWSNSTQSIEEVACEDHFTAHTYRDE
FT                 SGRFVVTLPKHQSVLAQLGSSKEIATKRFLALERRLDGNSKLKEEYTAFID
FT                 EYHQLGHMEEVDLNSSPVGPAYYLPHHGVEKVDSTTTKLRVVFDASCRTDS
FT                 GISLNQALMVGPVVQDDLFAIHLRFRMHKIAIIADIEKMYRQIRIHPSDYQ
FT                 LQRILWRSSSSEPLRTFELVTVTYGTASAPFLATRCLKESVPQGANDYPLA
FT                 SLILGKDFYVDDMLTGVDDDEEGAELCSELLELLQSAGFSLRKWASNSSTF
FT                 LSKIPIELRDERSSFALDSLSSPIKTLGIQWNPSTDTYSYAVPEWSKEAVI
FT                 TRRIVASDTAKLFLPLGLLGPIVVLAKIFIQSLWQTTFSWDEPLTQEQQHY
FT                 WSEFRNSLEDITSISIPRWVAFAHNPVLTELHGFCDASEKAYGACLYLRTV
FT                 SSDGTISVRLMAAKSKVAPTGKSKKQTTLTLPRLELSSALLLAHLYHKVSE
FT                 SIELKTKPFFWTDSMIALCQIRSPPARWKTFVANRVSEIQRLTVHGTWAHV
FT                 PGSENPADIISRGMSPAQLKETSVWWNGCEWLSQPSRFWPPINRPIPEDLP
FT                 TAAFEERAVSLPVQAVQPNEIFDSRSSFSSLVRVVAFLQRFVHNASPRNRT
FT                 DRKIGPLSTLELNNATITLVKIAQQEAFGKDIFEITSKGQVGSHSALKNLA
FT                 PIMVDGILRVGGRLRNAVISEDRKHPMILPARHKLTELVLVHYHLKNLHAG
FT                 AQLLVACVREKFWPLRIRNLARKVVHSCVNCFRCKPTNLEQLMGDLPPERV
FT                 TPTLPFLNTGVDLCGPFHFRKLPRAPPVKCYVAVFVCLVTKAAHVELVYDL
FT                 STAAFLAALHRFVARRGKPRLIECDNATNFKGAARELAQLRKQFYDQQHQA
FT                 EIIASCADDGTEFRFIPPRSPNFGGLWEAAVKSFKKHLRATIGNSVLSQDE
FT                 FVTLLARIEACLNSRPLTPLSADPNDLEVLTPGHFLVHRPLTSFPEPNLSE
FT                 VPRNRLDRWQANTELLRRIWKRWTTDYLSGLHPRTKWTQQRNNIEVGTLVL
FT                 IKEDNLPPLKWRYGRVIRVCRGSDNNIRVVVVRTADGEFTRSISKICVLPL
FT                 RRPVEDDVDTTNPSSED"
XX
SQ   Sequence 6328 BP; 1562 A; 1635 C; 1487 G; 1643 T; 1 other;
     tatttctggt ccttcgagcc ggattgcgcc gtgacttaat tcggacagtc acgcgcagtt        60
     tttgtgcatt tcgattgttc ccaaagtgat ttttcgtgtc gttggttctc gaacatttcg       120
     ccgcgtgtgt gctaagttag caaattgtgt tccgagcatc ggacaaaagt gctgaagaga       180
     gtgtcgctgc tattgtgttg tgtggccgtg attcggtgat agtgcaatcg gaatagtcct       240
     ggaatttctt cgagtttcat cttcctgtgt ggcgcgagag agaggctagg cttgggtcgg       300
     cattgtgctg atcggacaat agatgttcaa tctattcatc gcgagacaat caccaaggct       360
     tgacgtcatc gatggtagct attgatcggc tgagcacgtg agtagatcat tgcatgcgtg       420
     tgaagctttg gagcaaataa aacgatttgt gtacgtgttt tattgggcaa accacgtgat       480
     agatttgttg ctttctgtct gcaagtcgat gtttttcatc ccaatctagt tggtagctag       540
     tgtgctctgg tgagaagaat tggcatttcg agtgattttc atcacctttt gagattttgg       600
     gctgctggtc gctgtggaca atggcgccgg gattgcgaga gtattatcgc ttggagcggt       660
     tctacacgaa cacgttagcc aatgcaaagc aatttatgga tgggtatgac agtgaacagc       720
     acagcggaca actagaggga tggaagcagc gaattgaggg acttttcaag gattttcaaa       780
     ctaatcgcct tgctatcgag gtgttggaag acgtcgaaga tgatgggtca atcaggggtg       840
     gagctcgaga tgatgatgaa caagatgcag tcgacgaaaa gcatcgtctc atccatcaaa       900
     ggttcgaact agactacgtt ttgatctcca gttttctcac aaacgagatt cgcaaactcc       960
     agctcggtaa tcccccaaac ccaattcctc aggctaccga acattcgcgc gtcaaacttc      1020
     ctgaagttaa actccctagt tttgatggca ccatttcgga atggatcact tttcgcgatt      1080
     cattcaaatc gctcattgat tccaatcagc aacttacgcc ctttgacaag ttctcgtacc      1140
     tcgtagcttc cctaactaaa gatgcgagga aggttgtcga atcaatcgag ctctctgcgg      1200
     ccaactaccc ggtcgcttgg cagcttctgg agaaaaggtt cgaaaataag aagctcattc      1260
     tgaaaaccta tctcgatgcc ctttttgcga tcgaaccgat gaaaaaggaa agctacgact      1320
     ctttgttgcg gttggtcagt gagtttgaac ggaatttaag cttgatcgac aagatgggat      1380
     tcccaacgga gaattggagt gttattttag cacacatggt ctgtagtcgc ctcgacccct      1440
     ctaccttgaa gcaatgggaa tcacattacc gatcgacgga tgttccggaa tacaaggacc      1500
     tcatcacgtt tctccatggt cacttgtcag ttttgcagtc gttgccaccg tccaaatcgc      1560
     agtcatcaga gttcagcaaa atggatcaac atcggccgct gaaatcgaag atcaacaccg      1620
     tgcacaccgt taccagtcca gcgaccagct cgtgtccatt ttgctcaaaa tctccacatt      1680
     cgccattcaa atgtgatacg ttccaaggtt tgtcagtccc acaacgcttc gaccttgtca      1740
     agaagaagaa cctctgcata aattgcttct ctccgtcgca catgcttcgc agttgtccgt      1800
     ctagtacttg cagagtctgc aaccagaagc accacactat gctccatcaa acatcgaatg      1860
     atcgtccttc cgctcccagc aaacccatcg ctcctcgctc aaatccggtt cctccggaga      1920
     gtcaaaccat ctcaaaccag tcttcttcgc aatcgaatcc gtcgtcgtcg tcctcgtcag      1980
     aaacccaaaa gccttcgtcc tccgcctcta gcctcgtgtc caccacagtc gtcgccgctc      2040
     caagaagcgc tccagctacc gtcttgcttc agacggcgat catcaaagta ttttcatcaa      2100
     atggtcacgt tcagtgggcc agagcactgt tagatccagc gtcgcagttg aacctcatca      2160
     ccgaaaatct cgtccaacga ttgaagttgc gccgctatca gtgtcatcag gaaatcggtg      2220
     gcgtaggcaa ctctgcaatc gtttcttctc acgctgttct cgttcggatg gagtctcact      2280
     gcacagactt tgctgttgaa caaccctgtc acatcttaag gaagatcact agggaccttc      2340
     ccaacaggtc aattgattct tcgccctgga cgattccttc gaacatcatt ttagcagacc      2400
     ctaagttcca tgagccaggt cccatcgatc tgttacttgg catggagctg tactacgatt      2460
     tactgctaga aggattcacc aagctgggtc ctgagaaacc gatcctacaa aacactgttt      2520
     tcggttgggt tgcatcggga aaaatcggtt ccagcccacc tgaacgggtc ccgaaggtag      2580
     ctcacgtatg cagtagacaa cctctcgatg agttaatcgc tcgtttctgg gagatcgaat      2640
     cgtgctggtc aaacagcact cagtccattg aagaagtagc ttgtgaagat cacttcactg      2700
     ctcacaccta tcgagatgag tcgggaaggt ttgttgttac tcttcccaag catcagtccg      2760
     ttttggccca actaggtagc tcaaaagaga ttgctactaa aagatttctt gctctggaac      2820
     gtcgtctcga tgggaattcc aagcttaaag aagagtacac agctttcatc gatgaatatc      2880
     accagctggg tcacatggaa gaggtggatt tgaattcatc gcctgttggt ccagcgtatt      2940
     acctacctca ccacggagta gagaaagtgg acagcacaac cactaaactt cgggtcgttt      3000
     tcgacgcttc ctgtcggacc gacagtggaa tttctttgaa tcaggcgctg atggtgggtc      3060
     ctgtagttca ggatgatctc ttcgctatcc atcttcgctt tcgcatgcat aagatcgcca      3120
     ttattgcaga catcgaaaag atgtatcgcc aaatacgcat tcatccgtcg gattatcaac      3180
     tacagcgcat cctttggcgt agttcatctt ctgaaccgct acgcactttc gaactagtaa      3240
     cagtgactta cggcactgca tctgcgccct ttctggccac taggtgtctc aaagaatctg      3300
     tcccscaagg tgctaacgat tatccactgg catcgttaat tttgggcaaa gatttttatg      3360
     tggatgatat gttgaccggt gtcgacgacg atgaagaagg agctgaactt tgtagtgaat      3420
     tgttggagct actacaatcg gctggtttca gtcttcgaaa gtgggcatct aactcttcca      3480
     cgtttctctc gaaaattcct atcgaattac gcgacgaacg gtcgtccttt gctttggact      3540
     cgctctcatc tccgattaaa acgctcggca ttcagtggaa tccatccacc gacacgtaca      3600
     gctacgcagt tccagagtgg tccaaggaag ccgttatcac tcgtcgcatc gtggcatcag      3660
     atactgccaa actctttctg ccgctcggat tgctgggtcc gatcgtagta ctggccaaga      3720
     tattcataca atctctctgg cagactacct tttcttggga tgagccgctg actcaggagc      3780
     aacagcacta ctggtctgag ttccggaaca gcttagaaga catcacatca atttccattc      3840
     cgcgatgggt agcattcgcc cataatcctg tcctgacaga gttgcacgga ttctgcgacg      3900
     cttcagagaa ggcatacggc gcatgtctct acctgcgaac tgtatcgagt gacggaacca      3960
     tctccgttag actaatggct gccaaatcaa aagtagcacc gactgggaag tctaaaaagc      4020
     agactacgct gaccttaccg aggttggaac tgtcatcagc tcttcttctg gctcatcttt      4080
     accacaaggt ttccgaaagc atcgagttga aaacgaaacc tttcttctgg actgattcaa      4140
     tgatagctct ttgtcagatc cgatcgccac ctgctcgctg gaaaacgttc gtggcgaatc      4200
     gcgtgtctga gattcaacgc ctcacagtcc atggaacttg ggctcatgta cctggctcag      4260
     aaaaccctgc ggatatcatt tcgcgtggta tgagccccgc acagctgaag gaaacgtcag      4320
     tttggtggaa tggatgtgaa tggctcagtc aaccgtctcg cttctggccg cccatcaatc      4380
     gtccgatccc agaggatctt cctactgccg cttttgaaga acgcgctgtt tcattgccag      4440
     tgcaagcggt acagcccaac gaaatcttcg attctcgctc atcgttctcc agtctggttc      4500
     gggtagtagc ttttctacaa cgattcgtac acaatgcatc tcctcgaaat cgaaccgatc      4560
     ggaagattgg acctctcagc acattggagc tgaacaacgc cactataaca ctagtaaaaa      4620
     tcgctcaaca agaagccttt ggaaaggata tcttcgaaat cacttcgaag ggacaagttg      4680
     gttcgcactc agctttgaaa aatctcgcac caatcatggt tgacggaatc ctccgtgttg      4740
     gtggtcgttt acggaacgca gttatctccg aggataggaa acatcctatg atccttccag      4800
     cacgccacaa actaacagaa ctcgttctgg ttcactacca cctgaaaaat cttcacgctg      4860
     gcgcacagct tctggtagcc tgtgttcggg agaaattctg gcccttgcga attcgtaatc      4920
     tggctaggaa ggtggtgcac tcctgtgtaa actgcttccg ctgtaaaccc acaaatctcg      4980
     agcaactaat gggggactta cccccggaga gagttacgcc gactctgccg tttttgaaca      5040
     ctggcgtaga tttgtgtgga ccgttccact ttcgcaagct gcctagggcc cctccagtga      5100
     agtgctacgt ggctgttttt gtttgccttg tcactaaggc agcccacgta gaactcgttt      5160
     acgaccttag taccgccgct tttctcgcgg cattgcatcg attcgtcgct cgcagaggta      5220
     agcccaggct tatcgagtgc gacaacgcca caaatttcaa aggagcagca agagaactag      5280
     cacaactgcg aaaacaattc tacgaccagc aacatcaagc agagataatt gccagctgcg      5340
     cagacgacgg taccgaattc aggttcatcc caccccgcag ccctaacttc gggggcttgt      5400
     gggaggcggc ggtgaaatca tttaagaagc atctgcgggc taccatagga aattcggtgc      5460
     tttctcagga cgagtttgtg acactactgg ctcgaatcga agcttgcctt aattctaggc      5520
     ctttgactcc gctctctgcc gatcccaatg atctggaagt gttgactccg ggacatttcc      5580
     ttgtccatcg tccgctcaca tcatttccgg aacccaatct gtcagaggtt ccaagaaacc      5640
     gtctcgaccg ctggcaggca aataccgaat tactccgacg catttggaag cgttggacta      5700
     ccgactactt atcagggctc catccacgaa caaaatggac tcagcagcgc aacaatatag      5760
     aggtcggcac cctggtgttg atcaaggaag ataaccttcc acccttaaaa tggaggtacg      5820
     gccgtgtcat tcgcgtctgc cgtggctcgg acaacaacat ccgtgtagtc gtcgtgcgga      5880
     ccgccgacgg ggagtttacc cgatcgattt cgaagatatg cgttctaccg ttacgcaggc      5940
     ccgtagaaga tgacgtcgac acaaccaatc caagctcaga ggactgaacc cttccatcgc      6000
     attgctacgg cattgcgcaa cgtggaggcc ttagggcctc cgaccgtgta agttagtttt      6060
     ttattgaatt ttcaaaaagc ctaaagaatt ttttgtcctc cggcatgtcc tggctccgtg      6120
     atggctactt caaccccgag tacgcccaac cctgatgatc atcaatccct gaaaggcaag      6180
     ccgcctgcat cgtactggca gtgtggccag tgttggaacc ctgcggcgaa gtggcagact      6240
     acagcggact tcaaaacagg acaaactgca gtatcgttca tcatggttca tcggttgaaa      6300
     gtcgaccctt tcaacggggg ccggcata                                         6328
//
ID   BEL-783_AA-LTR repbase;    DNA;    INV; 401 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-783_AA-I;
KW   BEL-783_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-401
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-401
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 98-98 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 401 BP; 110 A; 95 C; 82 G; 114 T; 0 other;
     tgttaaggca ttatcgaatt gtaaaatgta tcaaattatg cgcaattatt agttcccacc        60
     ctgtaaccca catgtacgta agctagatgt aagatgattt agcttctcta tcactatcct       120
     tcggctaacg agtgaaacat ccgaccgaac acattgtttc cagtgttcgt attgaccacg       180
     ctataggata gaagatctct gcgcagatca gatcgaacaa tcagttgaaa tatagctctt       240
     cgatagaacg cacgttgtcg tcgctttgta gcaggaaagt gaaaacccct atcccctttc       300
     tatcgttccg ggcaccacgt ggtgttctga ttgtcgaaaa gagctccgtg ttcgagagct       360
     accggatatt tcggatcttt ggcgaacccc gtactccaac a                           401
//
ID   BEL-784_AA-I repbase;    DNA;    INV; 6076 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-784_;
KW   BEL-784_AA-I; BEL-784_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6076
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6076
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 250-250 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..6073
FT                 /product="BEL-784_AA-I_1p"
FT                 /translation="MEKHQKPAGYSCKSCTRPDTHEEKWVACDGCKLWEHF
FT                 DCAGVDESVQNRPYFCNECKSKIAVPTASTSRCLKPPPSEGRSLRSSVAKS
FT                 GLKPVNKVTQLASQFSRSAHSTTSSIRAARLQAQMKLVEEEQQLKEQELEA
FT                 QESMRKKEMEEEERLLEERKALLAAEAKLRQRKLQEERDYQRRQQTIRKES
FT                 LEKKNAITRQLSECSSRGESIPDSIEQVASWLQQCDDSKKNDPEDSQLARR
FT                 DILLPTHQSITEHNLEQHVSRITLQDPDHSVPVAVQEYVNPNLRQKTLPQR
FT                 NVNSENLTNQRFNPDQHSFPIHRPVQSHLGAGQQLPPESEPQQPRNSNRPY
FT                 EHWPFELSRPNPEEVAFPVALSASQLAARQVMGKELPSFSGNPEDWPIFFS
FT                 SFEQSTAACGYTDAENLIRLQRCLRGHALESVRSRLLLPSSVPQVINTLHT
FT                 LYGRPELLIRTLIEKVHRTAAPKQDRLETVIEFGLVVQNLVDHLKAAKQYT
FT                 HLANPVLMQELVEKLPGSLKMDWAIFKGKHSYPTLATFGDFMTRLVDAASQ
FT                 VTFELPTSAQSFRGEQRRSKEKSSLHAHSLMSSYSGHLNSPSSQRKSGKPC
FT                 AACEREGHRVADCHRFKAMNVDERWEVVHQKGLCCTCLNGHGKWPCKSWQG
FT                 CGFEGCREKHHTLLHPPSSQTTTNVSINHLMHNGGVSPMFRVVPVVLYAKN
FT                 RQEVVFAFIDEGSSNTFLEEAIANRLGVSGPAEPLTLQWTGKITREERRSQ
FT                 RIQLEISGEDSLNRHKLREVRTVSCLVLPTQTMKYGELCIQYPHLRGLPLK
FT                 DYELIQPKLLIGLDNLRLVVPLKVREGGVTDPIAAKCRLGWSVYGCLTGSP
FT                 SPRAVVHFHVATPVDSDRLLNEQLREYFALEEAGVCGQSELLESDDEIRAR
FT                 TIXRQTTKRTKNGFETGLLWRNDDPEFPDSYPMAVRRLKALERKLDKNSSL
FT                 QERVREKIDEYLKKGYAHKATDLELESTDRKRVWFLPLGIVVHPKKPNKIR
FT                 LVWDAAAMVDGVSLNSKLLKGPDLLTPLPAVLSRFRQYPIAVCGDIKEMFH
FT                 QLLIREQDRMAQCFLWRNSPGDPIAVYVMDVATFGATCSPASAQYVKNLNA
FT                 QEFADLYPRGATAIIKGHYVDDYLDSFMTVEEATDVVREVTLIHSHGGFEI
FT                 RGFRSNSMELLREIGEEIATEPKELMLERNSTSQSVLGMSWDPNNDSFSYS
FT                 FNLREDLRSILNEAYIPTKREILKVVMSLFDPLGLISHFLVHGKVIIQGTW
FT                 AAGTGWDEPINEDLNQKWRRWVSFFPKLDELKIPRCYFAPFPSNIDDLQVH
FT                 TFVDASDIAYTCVVYFRLVYDGHIQTALVGTKSKVAPLKTLSTPRLELKAA
FT                 VLGVRFVAAILEYHSLPVSKRFFWSDSTTVLAWIRSDHRKFHKFVSVRVGE
FT                 ILTLSEPQEWKWVESKLNVSDDATKWKTGPNLDSNSHWFKGPRFLHLDEAS
FT                 WPEQRCTTTTHEEIRRVQTHWNHEPVINYTRFSRWKKLLRVIAYVIRFSNS
FT                 LRRRNVGQKLHRQILTQEELAQAEILLWKMAQQEAFPEEWSILRKSIGSPE
FT                 AKHATVPKSSSIFKTWPYMDTNGVLRMRGRIGLAKHLPFDARYPVILPKEH
FT                 PTTILIVDWFHCHYRHANRETVINELRQRFEISKLRSLVQRVANRCIWCRI
FT                 NKALPKPPVMAPLPDERLEPFVRPFTYVGLDYFGPVFVKLGRSHVKRWIAL
FT                 FTCLSIRAVHMEIVHSLSTESCIMAVRRFISRRGSPAVFYSDNGTCFQGAN
FT                 KQLQEEIGASNEEFAVTFTNAETKWKFIPPASPHMGGVWERLVRSIKTAVG
FT                 SALEHPRKPNDETLETIINEAEALVNSRPLTYIPLESASQESLTPNHFLLG
FT                 SSTGNKTGSSEVVGASYGPATLRSGWKMAQHVVGEFWQRWIREYLPVITRR
FT                 NKWFKETKDLAEGDLVLIVNGTGRTQWIRGRIEKTIVGRDGRVRQAIVRTA
FT                 SGLLRRPAIRLAVLDVLEDCEPTGLQGDPGRHLGSRVG"
XX
SQ   Sequence 6076 BP; 1729 A; 1436 C; 1491 G; 1419 T; 1 other;
     aaatcttcaa ggattttaat cacggggttc gaaaatggag aaacatcaga agcccgctgg        60
     atatagctgt aagtcctgta cacggccaga tacccatgaa gaaaaatggg tagcttgtga       120
     tggctgtaag ctctgggagc atttcgactg cgcgggggtg gatgaatcag tccaaaatcg       180
     accctacttc tgcaacgagt gcaaatccaa aattgccgtt cctacggcat cgacatctcg       240
     ttgcctgaaa ccaccaccct cagaagggag atcgttgcgg tcgtcagtgg ccaaatccgg       300
     cctgaagcct gtcaataaag tgacccaatt agcatctcaa ttctctcgaa gcgctcatag       360
     tacgacttcg agcatccgcg ccgctcgctt acaggcgcag atgaagctcg ttgaagaaga       420
     acagcaactg aaggagcaag aattggaggc ccaggaatca atgaggaaga aggaaatgga       480
     ggaagaggaa cgtctgctag aagagaggaa ggcactgctg gctgcagaag caaagttgcg       540
     acagcgaaaa cttcaagagg aaagggatta ccaaagaagg cagcagacta tcagaaagga       600
     gtccctggag aagaagaacg ccatcacacg acagctgagc gagtgcagca gcagaggaga       660
     atcgattcca gattcgatag agcaggtagc cagttggctg caacagtgcg acgattctaa       720
     gaagaacgat ccagaagatt cacagttggc cagacgagac atactgctac cgactcatca       780
     atcaataacc gaacacaatc tagaacagca cgtctccagg atcaccctcc aagacccaga       840
     ccacagcgta ccggtagccg tccaggaata tgtaaatcca aatctacgac agaagacact       900
     accgcagaga aacgtgaata gtgaaaatct aacaaatcaa cgattcaacc cagatcagca       960
     ctcatttccc atccatcgtc cggtgcagtc ccacctgggt gccggccaac aacttccgcc      1020
     agaatcagaa ccgcaacaac cacgaaattc caaccggccg tatgagcatt ggccgtttga      1080
     attgtcacga ccgaatccgg aggaggtagc gtttcccgtg gcacttagtg cgagtcaact      1140
     tgcagccagg caagtcatgg ggaaggagtt gccgagtttt tccggcaatc ctgaagattg      1200
     gccaatcttc ttctccagtt tcgagcaatc aacagcagct tgtgggtata ccgatgccga      1260
     aaatttgatt cggttacagc gatgcctaag aggccatgcg ctcgagtccg tgcgtagtcg      1320
     gctccttctt ccctcgagtg tcccacaagt catcaacaca ttgcatacac tgtatggcag      1380
     accggagttg ctgataagaa cccttatcga gaaggtgcat cgcactgcag ctcctaaaca      1440
     agaccgtctc gagacagtaa tcgagttcgg gctagtggtc caaaatcttg tggaccatct      1500
     taaagcggcg aagcaataca cacacttggc caaccccgta ctgatgcagg agttagttga      1560
     gaaactgcct ggttcgctaa aaatggactg ggcaatcttc aagggcaagc attcgtatcc      1620
     gactcttgca acgttcggtg atttcatgac gaggttagtg gacgctgcta gccaagtgac      1680
     tttcgaattg ccgacctcag ctcaaagctt caggggtgag caacgacgat caaaggagaa      1740
     gagttcatta cacgcccatt ctttgatgtc atcatattca gggcatctga attcaccatc      1800
     aagccagaga aagtcaggta agccatgcgc agcatgtgaa cgcgagggac accgagtggc      1860
     agattgccat cgctttaagg cgatgaacgt cgatgagcgc tgggaagtcg tccatcagaa      1920
     ggggctatgc tgtacttgtt tgaacggtca cggcaagtgg ccgtgtaaat cttggcaagg      1980
     ttgtgggttt gaaggttgtc gcgaaaaaca ccatacactt ctccatcccc cctcttccca      2040
     aactaccacc aatgtctcca tcaatcatct tatgcataat ggtggggttt ctcctatgtt      2100
     tcgtgtggtt ccagtagtgc tctatgcaaa gaatcgtcaa gaagtcgtat ttgcctttat      2160
     cgacgaaggt tcgtcaaaca cgttcttgga ggaggcaatc gcaaatcgtt tgggcgtatc      2220
     cgggcccgca gaaccactta ctctgcagtg gaccggcaag ataacacggg aagaacgaag      2280
     atcgcaacgc attcagcttg aaatctccgg ggaggatagc ttaaaccgcc ataaattgcg      2340
     tgaagttagg acagtgagct gcttagtatt acccacccaa acaatgaagt acggagaact      2400
     gtgcatacaa tatccacatt tgcgtggcct tcccctaaag gattatgagc taattcaacc      2460
     aaagttgctc attggattgg acaacctccg cctggttgtt ccccttaaag tgcgcgaagg      2520
     cggagttacc gatccgatag cagcaaagtg ccgactgggt tggagcgtat atggctgctt      2580
     gactggttca ccgtcaccac gtgctgtagt tcatttccat gtcgccacac ctgtcgatag      2640
     cgaccgcttg ctcaacgagc agcttcgtga atatttcgca ctggaggaag ctggagtatg      2700
     cggacaatcg gaattgttag aatccgatga cgaaatacgt gcgaggacta tawtgcgaca      2760
     aacgacgaag cgtaccaaaa acgggttcga aactgggcta ctgtggcgaa acgacgatcc      2820
     tgaatttccg gatagctacc caatggccgt acgtcgatta aaggctttag aacggaaatt      2880
     ggacaaaaat tcatctttac aagagcgagt tcgtgaaaaa atcgacgaat atttgaaaaa      2940
     gggttatgcc cacaaggcta ctgatttaga actggagagc acagatcgca agcgagtgtg      3000
     gtttttgccg ttaggaatag ttgttcaccc caaaaaacct aacaagataa gactcgtatg      3060
     ggatgcggca gcgatggtgg acggagtctc cttgaactca aaactactaa aagggccgga      3120
     tctcctaact ccacttccag cagttcttag ccgatttcgg caatatccca tagcagtctg      3180
     cggtgacatc aaagagatgt ttcaccagct cttaatccgt gagcaggatc gcatggcgca      3240
     gtgcttcctt tggcgaaata gtccaggtga tcctatagcg gtctacgtca tggacgtagc      3300
     aacattcggg gcgacatgct cacctgcttc tgcgcaatat gtgaaaaact taaacgcgca      3360
     ggagtttgcc gacctatatc cacgtggagc tacagcaata ataaaaggtc attatgtcga      3420
     tgactattta gatagtttca tgaccgtgga agaagccaca gacgtagtga gggaagttac      3480
     gttgattcac tcgcatggag gcttcgagat tcgtggtttc cgttcgaact ccatggaact      3540
     tcttcgagaa ataggagaag aaatagctac agaaccgaaa gaactaatgc tagagagaaa      3600
     ttctaccagt cagtctgttc ttggcatgag ttgggacccc aacaatgaca gcttctccta      3660
     ctcctttaac ctacgggaag atttacgctc catacttaat gaagcctaca tccctaccaa      3720
     gcgagagata ttaaaggttg ttatgagcct cttcgaccct ctaggactca tctcacattt      3780
     tcttgtccat gggaaggtta ttattcaagg aacatgggca gctggaacgg gatgggatga      3840
     accgatcaac gaagacctga accaaaaatg gcgtcgctgg gtatcatttt tcccgaaact      3900
     agatgaactg aaaatccccc ggtgctattt cgcgccattt ccatccaaca ttgatgatct      3960
     acaagttcac acattcgttg acgccagcga tattgcatac acttgtgtgg tgtacttccg      4020
     actcgtgtat gacggccata tccaaacagc actggtagga accaaaagta aagtagcgcc      4080
     tctgaagact ttgtccaccc cacgacttga actgaaagca gcagtcctag gagtacgttt      4140
     tgttgctgct attctcgaat accactctct tccggtgtcc aaacgattct tttggagtga      4200
     ctctactaca gtattggcct ggatccgttc agatcatagg aagttccata agtttgtgtc      4260
     ggtacgagtt ggagaaatcc taactctcag cgaaccacag gagtggaaat gggtggaatc      4320
     caaactaaat gtctccgacg atgcaacaaa gtggaaaacc ggcccgaatc ttgatagtaa      4380
     tagccactgg ttcaagggac ctaggttttt acacctggac gaagcatcgt ggcccgagca      4440
     gcgctgcaca accactacac atgaggaaat tcggcgtgtt cagactcact ggaatcacga      4500
     accagtgata aactacactc gattcagcag atggaaaaag ctccttcgcg taattgcgta      4560
     cgttatccgt ttttccaaca gtttgcgtcg acggaatgtt ggtcagaagc tacatcgcca      4620
     aatactcact caagaagagt tggcacaggc tgagattctt ctatggaaaa tggcacaaca      4680
     ggaagctttt ccagaagagt ggtctatact gcggaaatca attggttcac cagaagccaa      4740
     acatgctact gttccgaagt ccagctcaat tttcaaaaca tggccttaca tggacaccaa      4800
     tggagtactg agaatgcgag gtcgtattgg gttggccaaa catctaccat ttgatgcaag      4860
     atacccagtt attttgccaa aggaacaccc tacaacaatc ttgattgttg actggtttca      4920
     ctgtcattat cgtcacgcca atagagaaac agttataaac gaactacgcc agcgtttcga      4980
     gatttcaaag ttgagatctc ttgtgcaaag agtagcaaac cgttgtatat ggtgtcggat      5040
     aaataaggcc cttccaaaac cacctgtaat ggcaccactt cccgatgaga gactggaacc      5100
     cttcgtgcgt ccgtttacgt atgttggcct ggactatttt gggccagtat tcgtcaagct      5160
     tggtcgaagt catgtaaaac gttggatagc ccttttcacc tgtctttcca ttcgggctgt      5220
     tcatatggaa atagtgcaca gcctctctac agaatcctgt attatggctg tccgaagatt      5280
     tatttcacgt cgtggttctc cagctgtttt ctattcagat aacggtactt gttttcaagg      5340
     tgccaacaaa cagcttcagg aagaaatcgg tgccagtaac gaggaattcg cagtcacttt      5400
     cacgaacgcg gaaacaaagt ggaagttcat accgcccgcc tctccccaca tgggaggcgt      5460
     gtgggagcgt ttggttagat caataaagac agcggttggt tctgctctag aacatcctcg      5520
     taagcccaac gatgagactc tggaaaccat tataaatgag gccgaagcac tagtaaactc      5580
     cagaccactt acgtatattc cgttggaatc agccagtcaa gagtcgttga cccccaacca      5640
     ttttctgttg ggcagctcaa cgggaaacaa aactggatca tctgaagttg tcggagcttc      5700
     ctatggacca gcaacacttc gtagcggttg gaagatggct caacatgtcg ttggagagtt      5760
     ctggcaaagg tggataaggg aatatctacc agtcatcacg cgccgaaaca aatggtttaa      5820
     ggagaccaaa gaccttgcag aaggagatct ggttctgatc gtaaatggaa ctggacgtac      5880
     tcaatggata aggggacgta tcgagaaaac catcgttggc agagacggaa gagttcgaca      5940
     agcgatagtt cgtacagcaa gtggactttt acggcgacct gctattaggc tagcggtgtt      6000
     ggacgtctta gaagattgtg aacctacagg ccttcaagga gatccaggac gtcacttagg      6060
     ttcacgggtg ggggta                                                      6076
//
ID   BEL-784_AA-LTR repbase;    DNA;    INV; 519 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-784_AA-I;
KW   BEL-784_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-519
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-519
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 99-99 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 519 BP; 172 A; 114 C; 81 G; 152 T; 0 other;
     tgtgccgaca acacccctcg gtgcagcgcc gctgcgaaca ctcacgtaca gtagatcgta        60
     cctgaacgtt ccgtcatgcc tgtcactgcg acagataggt agataagaca gaaaaacaat       120
     tcatcacctg caagtcatca ttacctcaac cttatacagc tagtgttcta ctaaagctaa       180
     tctgccttat tcaacttaat ttctataatt tgctaatctt aaattgcttg aactacatat       240
     aaaattactc aactgaattg taagtactta gaaaatctat ggttgtacct agaactaaag       300
     aacttaatta tgtttatagc gaacgcaaaa tccagatcta gggtattcga tacgatttct       360
     tcaaaagcgt atgaagtgca ctaaaatcgt gagtaacaaa tttctttgta ttctgaaccc       420
     atgatattta ataaaacatt ttgtagcttg aagcttacac gatcaaaaag ctgacgtttg       480
     ctatcaagat ctagtgtgac atcaccccca ttcccaaca                              519
//
ID   BEL-785_AA-I repbase;    DNA;    INV; 5928 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-785_;
KW   BEL-785_AA-I; BEL-785_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5928
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5928
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 157-157 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 5928 BP; 1599 A; 1585 C; 1313 G; 1411 T; 20 other;
     tctggtcctt cgaaccggat aagcgtcgac actccgcttg tccgaaccgt gatttctcca        60
     gtggattgct tcgccatctt gaacctgaaa tcscgaagga agtgcatttc atcggcctgc       120
     gaacgatttc gccgccatct tcaccttgct gcttgagatc cttcccgcgt gttgctactt       180
     tccatcaata caaggcactg aattgccttg tctaagatcg ccatgtcaac ggagcgccgg       240
     gtcaagacgc tgaagctgcg cgtacgcagc atccaaacat cgttctcctt gatccagacc       300
     tttatggaga actacgatgc ggagacggac gttcacgaaa ttccagtgag gctggaaaat       360
     ctcacgacgc tttggaacga ctacagcaaa actcaatccg agctagaatc gatggacgaa       420
     gcgggtgtgg aagcgctgtt caagcagcgc acagagtttg aatcggccta ctataaggtg       480
     aagggattcc tcctcgccga aaataaatct cctactacat tgtgcgcctc gcctagttat       540
     cattcagctg ctcaagtccc tcagtccgcc tcccatgttc gactccccga cgtaaagtta       600
     ccagtattca gcgggagcat ggataattgg ttaaattttc acgacctcta tatttcgttg       660
     gtccattctt cgacagaact ctcaaatatt caaaaatttt attatttgag atcgtcccta       720
     gctggagatg ccctaaaact cgttcaaacg attcagatca gtgcgaacaa ctacatggtt       780
     gcctggaagc tgcttgagga ccactaccag aaccctgtac gcttgaagca gaactacgtc       840
     gacgccctgt ttgagttttc caccttgaag cgagaatctg cagcagaact ccattcactt       900
     gtagagaagt tcgagtcaaa tgtaaaggtc ctacagcaac tsggggaaca aacgcagtca       960
     tgggatctct tacttgtccg catgctgagc actcgtttag accccacaac tcgtcgagac      1020
     tgggaagagt ttgcctccac tcagaaccgc atctccttcc aagacttaac cgcattcatc      1080
     cagcgtcgag ttactgtgct tcagaacata caagtcaaac ccaacgagaa tctcatcgtg      1140
     actactacta agaagccaac caaccgtcca atcgctagcc acggagcaac ccaacttaac      1200
     cctcggaagt gccttctgtg tagcgaccat catccactgt acatgtgttc atccttttcg      1260
     aacatgaacg tagaagaaaa ggagaaagag gtgcgacgtc atcaactgtg ccgtaattgc      1320
     cttcggaagg gacattttgc caaggattgt tcgtcgtcta gtacttgtcg aaagtgtcgc      1380
     aatcgtcatc acacccaact atgcgccagt gagggatcga acagcagcaa accgaaakct      1440
     tctgaatcca attttccstc gcattctgca gagcagtcat ctacaccaac cgtttcagca      1500
     acagccatcg aaccaaccag ctacgcctca gcaggaaagg gtagcaaaaa cgtcctccta      1560
     gcaacagcgg tagtcgtcct gatcgacgac aacggagtga agcacgctgc tagagcactt      1620
     ttggattctg gaagcgagcg ttgcttcata acagaagctc tgtcccaatc gttggtagtt      1680
     cgcagaaaga gaatctccct tccaatagcg ggaatcggtc gatcgtcaac tcaggcacgc      1740
     cagatgttca cttcaaccat tcgctctcgt acttcggact tcagcgcgaa cgtagaattt      1800
     ctcgttctac ctaaactcac cgttgactta ccgtccgctt cgatcgacac gacgtcgtgg      1860
     aaaataccag ctgatctaca gctcgctgac ccagcattct acaaggccaa tccagtcgat      1920
     ctcattttgg gcgccgaagt gttcttcgat atattcaaac caactggtag gattcaacta      1980
     ggcgaatcgc taccaatcct cgtgaattca actcttggtt gggtgatagc aggtcgagct      2040
     gctcattgtc atcaaatttc acctgtcgtc gccaatgtag caacaacgtc taatctacct      2100
     gaactaatgg agagattctg ggcgttggaa gaagatgcat ctacacctaa ctactccgtc      2160
     gaagaggctg cttgtgagca acattttcag cagacagttw ctcgcaactc cgaagggcgc      2220
     tatattgtgc gccttccact gaagcaagat gttttggcaa ccttaagcga taatcgtggt      2280
     acagcagtga gacgctttca tttgttagaa cgacgattgg ctcgcaacga ggacctgcgc      2340
     acgcaatatt gcgactttat ggatgaatat cttcgcctcg gtcacatgga acgaatcact      2400
     aatcacgata atacttccca akcatctttt caccttcctc accacgctgt aattcgggaa      2460
     gacagctcaa ctacgaaagt ccgcgttgtt ttcgacgcat catgcaagtc agcgtcmgga      2520
     ccktctttga acgaggctca aatggttgga ccaatcgtcc aagaagattt gagatccatc      2580
     atcatgcgct cacggaagca tcctgtcatt ctcatcgccg atatcaaaca gatgtaccga      2640
     caggtgctgg tggacgagaa ggacacacca cttcaacgta tagtctggcg atcttctcct      2700
     gattcacccc tcagtacctt cgaactcaaa acggtaacgt atggcacggc cagcgccccg      2760
     tttcttgcca cacgggtcct gaaacagctg gctgaggacg agcgaaacag ttttccagaa      2820
     gctgcagaga ctctcagcag agatttttat gtagacgatt tgttctccgg cgcagctagc      2880
     gtcactgaag ctgttgaact tcgagagcag ttggattcat tactgactaa gggaggattt      2940
     cagttgcgca aatgggcctc gaacgaaaac gcagtgcttg aaggagtacc tccggagaat      3000
     cgtgctctat catcatccgt cgaccttcct caggaccaat gcatcaaaga ctttgggcgt      3060
     ttattgggaa ccagcttctg atgtccttcg ataccgtatc aatctwcctc ttgcagacag      3120
     caccgtagca ctcaccaagc gaattgcgct atcgctcatt gcccaattgt tcgaccctct      3180
     cggactggtg gggccagttg tcacaacagc gaaactcttc atgcagtcgc tctggacaat      3240
     gaaagatgat aacggcaaca cctggggttg ggatcttgag ctgccttcaa ccatgaagga      3300
     acgatggaga acttatcaca ctcaacttcc tctattgaat gagctcaaca ttcaamggca      3360
     cattttatgc tccaatccaa cgaccattca gctacatttt ttctcagatg cgtcgcagca      3420
     cgcctacgga gcgtgcgctt atgtacgatc cacaaacgcg gaaaacgtcg tcaaggtagc      3480
     tcttctgaca acgaagtcta aggtagctcc gttgaaacaa cagagcatcc ccagattgga      3540
     gctatgcgga gctcttatcg ccacccagct gtatcagaag gttacatcat ccctccaact      3600
     tgcggtcaaa acttactttt gggtggattc cactacggtt gttagctggc ttcagtcacc      3660
     accatccacg tggacgacat tcgtggccaa ccgtgtgtca aaaattcagt tagcgacgga      3720
     gaattgtacc tggcatcaca tcgctggcca tgagaacccg gcagatcaca tttctcgtgg      3780
     catgactgct gaatckattc tcgactgtga cctctggtgg aatggaccac catggcttcg      3840
     asaagacgaa ggtgaatggc ctattcaacc aatcgacccc ggaaaggaca tcgaagctcc      3900
     gatagaagct cgcaagacat cgccggctat gataaccgcc ctttcggaac catcmtttgt      3960
     cgatcaacta gtaaccagat tctcgaacta ccatcgactg atgcgagtgg tcgcatactg      4020
     tcgtcgattc gccaaaaact gccaactagg taaggacaag cgattgcaga acattcaaat      4080
     caacatggac gagttgaaag aagcagaagc atctgtaatc aaactggttc agcaacaaca      4140
     cttcggagaa gaatggaagt tactccagca tkctaaacca gtaggaacca aatctagaat      4200
     aaaatggttt caccctattc tagcagccga tcaaatgatc cgcattggtg gtcgcctaaa      4260
     gcaagctcat cagccatatg acgctaagca tcagataata cttccgtctt ctcatcccat      4320
     atctgcacta cttgttagaa gtttccacga acaacacctc cacgccgcac cacaattgct      4380
     gcttascacc ctacggctcc gatactggat cttgggggcc aggagtttgg cccgtcgaat      4440
     cgtccacaat tgcgtcatat gtgttcgtgc tcgccccaaa ctactcgagc agttcatggc      4500
     tgagttgcct gccccacgga taactgcctc tcgaccattc tcatcgaccg gtgtggacta      4560
     ttggggtcca atttaccttc aaccgactca tcgacgagca gctgctagga aggcttacgt      4620
     tgctgtcttt gtatgcttct gcacwaaggc agtgcatttg gaaatggttg tggacctcag      4680
     cactgcgaag tttattcagg cactccggag atttgttgct cgccgtggcc tgtgttccaa      4740
     catctacagc gacaatggga caaactttgt gggagcagca aaagagcttc gtacattggt      4800
     cctaaacaat caacaccagc aaacagtggc tcaagagtgc acccagcttg gcatcaaatg      4860
     gcacttcaat ccaccgaaag cctctcactt cggtggtttg tgggaagctg ccataaaatc      4920
     agcgcagaaa cactttgtcc gtgtgctggg agcgcgcact ttagcttacg acgaaatgga      4980
     gacattgtta acacagatcg aatcctgcct caactcacga ccattagttc ctctaagcga      5040
     cgacccgtcg gacttcgatc ctttaacgcc gggacacttt ttggtaggat catcattgaa      5100
     ggcagttcca gatgtcgacc tcacagakat accattcaac cgcctgcgac agtacgaagc      5160
     aacgcagaaa attttgcaat gcatttggaa ccggtggcat gcagaatatt tgacgactct      5220
     ccaagcaaga actaaatggt tcaaaccgcc ggttcaaatt gccccaaatc aactggtgat      5280
     catcaaagat gaaaaacttc ctcctatgcg atggcctact gcgagaatcc tgaaacttca      5340
     ccccggagct gacggaatca caagggtagt taccgtccga acaccacaag gaattttcac      5400
     tcgtccggtg tcgaagcttt gtttacttcc cattgcaccg acgaatgaaa cggcagccgt      5460
     aggagaaatt gcttcatcgt ccgattacca ccgtgcatcc gaacctgcga aacctgaaat      5520
     taaataaatc caaggccctg ttgaaacagg gaccaggtga gtccctgtcc aaccacttta      5580
     tcttttggta aawcccgcta ccgggtcttt tttttgccag aaactccccg ttcgtcatca      5640
     aaactggtct ggagcagcga ttgcagtgcg taaaatgaca acaaacaacg aatgacaaca      5700
     tcagcaacga acggagaacg aaggcaaaac gtcaaccttt catcgacawt cacgagggac      5760
     aacccattcg cttcatcgag ttcatcgaga cggcaattca tcgagtctag tgcaacaatc      5820
     gtataaaacc taacagttgt ttcggagcaa atcgtatgac atcatcgaag aggacaacta      5880
     cctggtttgc cgakaatgga cagaaataag acttctgggg ggccagga                   5928
//
ID   BEL-785_AA-LTR repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-785_AA-I;
KW   BEL-785_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-492
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-492
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 166-166 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 492 BP; 162 A; 101 C; 90 G; 125 T; 14 other;
     tgtttgtaca aaccgaaatt atcwgcgcta cctgtccgtc agatkcagga atcacccaat        60
     taggtcaact ctgttctaaa cggatcatma tggcccaatt tgacagttgc ctcctacacg       120
     ttccgggaca acctacttcc gatggatcac ctataaaaga cctcgagaaa gcaagagaag       180
     ccctcttttt acctttgttt tgctcagtgc gaagamtgtg aattcaatga atagtgsaag       240
     aaatatawta attagctacc agtaaaatga acctakwwta ataaagtgaa ctaaaacgtw       300
     aaactgaaat sgtgwaactg aagtgatgtg aagaagtatt acttacctgc atgtgaacct       360
     gaaaggaaaa mctaaactta cctgtgaccg aagaaatctg ctgaagaaac acctacctgw       420
     taaatctgct gaagaaatta cttacctgtg agaagataca ctgctgctac gctgctctcg       480
     ttgatgctaa ca                                                           492
//
ID   BEL-786_AA-I repbase;    DNA;    INV; 6183 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-786_;
KW   BEL-786_AA-I; BEL-786_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6183
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6183
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..6160
FT                 /product="BEL-786_AA-I_1p"
FT                 /translation="MIKNEGVNQADVLRKIKDNLLESIDLLISLAREDQTG
FT                 QYELYRTWSDRLEEIAKEYRHTVCVLEATYEDNFKDERMNFDTKYYMLRAF
FT                 LLKRLNQNAQHNTPPLQTSTHVSHIRFPELNLPRFSGKLSDWCVFRDAFDS
FT                 AIGNRAEISDVDKFQYLKGLVQGEAAKIIESISISEDGYRDAWRALKLRYE
FT                 NKRQLIRCHIKSLFEVPTMKKESADELLNLVDRFELQISALKRLGEDTNSW
FT                 DSLLVYQLSIRLDPHTLKEWESYCARLDSDNVANVLGGAAAEESDEDDMPT
FT                 YVSMVNYLQNYARVLQCVNPSPVSSRDRDPRLKSTKSAVHFSSSSSSPGGQ
FT                 PSRKCEKCSQNHFLYHCPEFQKLSEQQRFELVKIKKLCANCLRSTDHFAKS
FT                 CQSKLCNRCHKKHHTLLHGAQFVQQPPSDPQGNASVSLVAQSSAPSPLQPT
FT                 PSPVVNTPAPPLQNQPQPPRLSPVVGMHPSQCSTVHKAPANLHFAMMAYDK
FT                 ENVHTAVILPTALVEIEDVHGRKVLARCLLDSGSQSHFITQALSEKLRLPR
FT                 TRAPAPVLVCGIGKSTTKATHSVTTKISSRVSPYVVEPQLLVLRSLAIKLP
FT                 GSTINIQDWEIPETVRLADPTFHVSNEIELILGAQFFFDTLRYGRIQLGEQ
FT                 LPVLQNSVLGWVVSGPCTIRDHDHADPRSCLMSSAVRVEEILRKFWELETV
FT                 HDNKGWSTTEKFCEEHFLANFTRRPEGRYIVRLPKREELVPQLDDNLYQAT
FT                 RRFYSLERSLSSDIQKRKLYQDFIAQYIALGHMREVSEEELNVRPQFILPH
FT                 HGVLKPESTTTKLRTVFDASCKSRSGLSLNDVLIPGPTIQEMLVQIVLRFR
FT                 LYRYVVTADIEKMFRQILVHHLDQPLQRILWRDDPELHLKVYQLLTITYGL
FT                 NNSPFLATRVLQQLASDEECRFPLAASIVRKDFYVDNLLTGSNNVEQLKLI
FT                 VKEMIELLHAGGFPLRQWSSNCQGVLDVVPEHLRETRTLLELDRESPVTAL
FT                 GLRWEPATDQLSFKPPKWRDNQPLTKRTVLSQMSSLFDPLGLLGPTVVRAK
FT                 IIMQALWKLQLEWDAPLPSKFEEEWSSYQRDVSYLEDLRIPRMVMLSPHHC
FT                 LEIHGFSDASLQAYGACVYLRSIETNGQCYVQLLTAKSRVAPLSSKSIPRL
FT                 ELSAALLLAHLLDRVQKSTSLVAPVYLWTDSTITLDWISAPPSTWKTFVSN
FT                 RVAEIQELTASASWNHVPSDDNPADLLSRGTSLENLVENSLWWNGPGWIRS
FT                 LDEPWPTKYASRKQNPDDPELRKVVALPVFTEPDDIIDRYSTLTPLVRACA
FT                 WWHRILENTRRAKGDRVIGPLSASEVDRALLRLISRVQEDVFGPEMKQLAR
FT                 NESVSKKSKLRFLNPQLVDGLIRVGGRLHHSGLNVDKQHPVVLPAQHRLTR
FT                 MIVSLEHLKTLHGGPTLLLSSLRRRFWPLNGRNLASTTVHRCVTCSRASPK
FT                 PLEQLMGNLPPVRVTRAFPFENVGVDFAGPIFLRAANRRAAPVKAYVAVYV
FT                 CLAVKAVHLDLVPDLTSEAFIASLHRFTGRRGKPNHIYCDNGRNFVGAQRE
FT                 LAELRKLFVSQQHKDVVTRDCAVSNIEFHFIPPRSPSLGGIWEAAVKSMKF
FT                 HLRRIMGNAMLTETEFRTALIQVEAALNSRPLTSMSEDPLDLQPLTPGHFL
FT                 VGRPLNAIPEPNLQDVPENRLSRWQRVQKLSQQFWRRWQNDYLSTLHNRYR
FT                 WSNCTANLVRGAIVLLRDENLPPQKWSVGRIVDVHPGTDGLVRVASVRTSS
FT                 GITKRGVTQLCLLPIEINPEDVQQQSPATNDTGADEE"
XX
SQ   Sequence 6183 BP; 1549 A; 1548 C; 1476 G; 1610 T; 0 other;
     ttggtccttc tgacccggat ttacggttcg tttgcttgcc cggttttaat ccggaatcgt        60
     tccgactcgc gttaaagtga aaatcgccaa gatttggctg acaccgacga agtggtggaa       120
     aaatttgcgc ttccacagtg aatagtgttt aaacggcaaa gagagcgcga aaaatccggc       180
     aaatcaacga aattcgcctg atgtccgaat tgcgcagtga agtttctgga agcgtaaccg       240
     aaacgtgcta gtgcggccat tttgtgccta gaaaattcca tgcgattcga caaagctttg       300
     tagtgtgaga gtgagaaaat ccgagtcgct actcgtccgg tgtttgtgtg ctgtgagaac       360
     gggagaaacg aagttcggcg aatgtgattg tgttgcgtat cggctacgat caccgctgct       420
     aaaaggtatc cgtggcaccc gagaaggaga agagcgagct gccgttcgct tgtttgacgt       480
     tccagtttcc acgctgtacc cgacgattgt atgccagcca ccacaggggt agccgagctt       540
     ccatcattga gtgagtacaa aggttctttc tctcttgtac acgactcgcg tcgtgattcg       600
     tgtattcgtt tgcgttcgta tcgttgacgt cggtgtgata ccactgctcg tcgtctcgtt       660
     gcccggttcg atcgttttcc gactcggaaa gctattcatt ccgtattcgc gcaccgtgta       720
     gagccacgtt aaaacaatga ttaagaacga gggtgtcaat caggcggatg ttttgaggaa       780
     aatcaaggat aatttgttgg aatcaattga tttactaata agtcttgcga gggaggatca       840
     aactggtcag tatgaactct accggacatg gtcggatagg ctcgaagaga tagctaagga       900
     gtatcggcat acggtatgcg ttcttgaagc tacgtatgaa gacaacttca aagatgaacg       960
     catgaatttc gatacgaagt attatatgtt gcgtgcattt ttattgaaac gtcttaacca      1020
     aaatgcacaa cataatactc cccctttgca aacgtccacg cacgtcagcc atattcgttt      1080
     ccctgaacta aatcttccac ggttcagtgg aaaactttcc gattggtgcg tgttccgtga      1140
     cgctttcgat tctgcaatcg gtaatcgtgc cgaaatcagt gatgttgata aatttcaata      1200
     tcttaaaggg cttgtacagg gtgaagccgc aaaaattatt gaatcaatat ccattagcga      1260
     ggatggatat cgcgacgctt ggagggcctt aaagctacgt tatgaaaaca agcgtcagct      1320
     catacgctgc catatcaagt cattgtttga ggtacccact atgaaaaaag aatcggcaga      1380
     tgagctactc aacctggtcg atcgatttga gttgcaaatt tctgccttaa agcggcttgg      1440
     agaagatact aattcctggg attcgctgct ggtttaccag ttatcaattc gtttggaccc      1500
     tcatacgttg aaagaatggg aaagttattg tgccagactg gacagcgata atgttgccaa      1560
     tgttcttggt ggtgcggcgg ctgaggaatc agacgaagac gatatgccga cgtatgtttc      1620
     gatggtgaac tacttgcaga attatgccag ggttttgcag tgtgttaatc cgtctcctgt      1680
     ctccagtcgt gatcgtgatc cgaggctgaa gtcaacgaag tccgctgtac attttagttc      1740
     ctcttcttcc tcgccaggtg gtcaaccttc tagaaagtgt gagaaatgca gccagaatca      1800
     tttcctgtac cattgccctg aatttcaaaa gctatctgag caacagcggt ttgaacttgt      1860
     gaagatcaag aagctatgcg ccaattgtct tcgtagtaca gatcactttg caaagtcatg      1920
     tcaaagcaaa ctttgcaacc gctgtcataa gaaacaccac actctcctcc atggggcaca      1980
     attcgtacaa cagcccccat ccgatcccca aggcaacgca tctgtgtctc ttgtcgcaca      2040
     atcctctgct ccgagccctc ttcaaccgac tccgtctcct gtagtgaata ctcctgcacc      2100
     gccgttgcag aatcagcccc aacctccaag gttgtccccg gttgtcggta tgcatccatc      2160
     ccaatgttct acagtgcata aggctcctgc aaacctgcat ttcgccatga tggcttatga      2220
     caaggagaat gtacacactg ctgtgattct ccctaccgca ctggtagaaa ttgaggatgt      2280
     ccatggtcgc aaggttcttg ctcgttgtct actagactca ggttctcaga gccacttcat      2340
     tacgcaggct ctttccgaga aactccgact tccacgtaca cgtgctcctg ctcctgtgct      2400
     agtgtgcggt attggcaaat caactactaa ggccacgcac tccgtcacta ccaaaatatc      2460
     gtcgagagtt tcaccgtatg ttgtagaacc gcaacttcta gttcttcgtt ctctcgccat      2520
     caagttgcca ggatcaacaa tcaatatcca ggattgggag attcctgaaa cagtacgtct      2580
     tgctgatcca acgttccatg tgtcgaatga gattgagcta atcttgggag ctcaattctt      2640
     tttcgacact ctccgctacg gccgtatcca gcttggtgag cagttgccgg ttcttcagaa      2700
     ttccgttctc ggatgggtag tatcaggtcc ttgtaccatt cgagatcacg atcatgctga      2760
     tcctcgttcc tgcctaatga gtagtgcagt tcgtgtagaa gaaatccttc gaaagttctg      2820
     ggaattggaa accgtccatg acaacaaggg ttggtccaca actgaaaagt tctgtgagga      2880
     acacttcctg gccaacttca cccgtaggcc tgaaggtcgg tacattgttc gactgcctaa      2940
     acgtgaggaa cttgttccgc aattggatga caacttgtac caggccacta gacgtttcta      3000
     ttccttggaa cgttcgcttt cgtcggatat acagaaaagg aagctgtacc aagatttcat      3060
     cgctcagtac attgcactgg gacacatgcg cgaagtatca gaagaggaac tgaacgtcag      3120
     accacagttc attctgccgc atcatggggt tctaaaacct gagagcacaa ctaccaaact      3180
     caggaccgta tttgatgcat cctgcaagtc tcgttcaggt ttatctctaa acgatgtttt      3240
     gattcctggt cccacgattc aggaaatgtt agtgcaaata gttctgcgat tccgattgta      3300
     tcgttacgtg gtgactgcag atattgagaa gatgtttagg cagattttgg tccatcactt      3360
     ggatcaaccg ttgcaacgca tattgtggcg tgatgaccct gaactccact tgaaagtgta      3420
     ccagttgctc accatcacgt acggtttgaa caactcgccg ttcttagcaa cgcgtgtgtt      3480
     gcaacagcta gcttctgacg aagaatgtcg tttcccgcta gcagccagta ttgtccggaa      3540
     ggacttctat gtggacaacc ttctcactgg ttcaaacaac gtggaacaac taaaattgat      3600
     cgtgaaggag atgatcgagc ttctgcatgc cggaggtttc ccacttcggc agtggtcgtc      3660
     taactgccaa ggcgtactcg acgtcgttcc agaacacctt cgagaaacac gtacgctgct      3720
     agaactggat cgagaatcgc ctgttactgc tcttggctta cgctgggaac ccgcaactga      3780
     tcaactttcg ttcaaacctc caaagtggag agacaaccag ccattaacca agagaaccgt      3840
     tttgtctcag atgagcagcc tgtttgaccc acttgggttg ctaggtccaa cagttgtacg      3900
     agcgaaaatc attatgcaag ccctctggaa actccaatta gaatgggatg caccgcttcc      3960
     atcgaagttc gaggaagaat ggtcttcgta tcagcgagat gtttcttacc tagaagatct      4020
     tcgcattccg cggatggtca tgctctcacc ccaccactgc ttggaaatcc atgggttcag      4080
     tgacgcgtct ttgcaagcct atggagcatg tgtgtaccta agatcgattg aaacgaatgg      4140
     tcaatgctat gtacaactgc taacggctaa atcgcgagta gctccactca gcagcaagtc      4200
     aatccctaga ctggagctct ccgctgcact gcttctggca catctcctgg atcgagttca      4260
     aaaaagtacc tcacttgtag ctccagtgta tctttggact gattcgacca taacgttgga      4320
     ttggatctca gctccgcctt cgacctggaa gacttttgtc agcaatagag tcgcagaaat      4380
     tcaggagttg actgcttccg cctcttggaa tcatgtacct tccgacgata atcccgctga      4440
     cctgttgtca agaggcacca gcctagagaa ccttgtcgag aacagtctat ggtggaatgg      4500
     acccggctgg atcagatcat tggatgaacc gtggccgaca aaatatgctt cacgaaaaca      4560
     gaatcctgac gacccagaac tacgaaaagt tgttgcgctg cctgtattca cggagccaga      4620
     cgacatcatt gatcgctatt caacactcac ccccctcgtt cgcgcgtgcg cgtggtggca      4680
     ccgtattctc gagaacactc gacgagcaaa aggtgatcgc gtaatcggtc cgttatcggc      4740
     gtcggaagta gatcgtgcgt tactacgttt gattagtcgt gtgcaagaag atgtatttgg      4800
     tccagaaatg aagcaactcg ctcgaaacga atccgtaagc aagaaatcca agttacgatt      4860
     cctgaatcca caactcgttg acggcttgat acgagttggc ggccggcttc accattccgg      4920
     cctcaatgtc gacaagcagc accccgtggt acttcctgca cagcatcgac tcaccagaat      4980
     gatcgtttct cttgagcatc tgaagacgct gcacggtggt ccgactcttc tactgtcgtc      5040
     tctgcgtcgt cgcttctggc cgctgaacgg tcggaatctt gccagcacaa ccgtacatcg      5100
     ttgcgttacc tgtagccgtg catctccgaa gccgctggag caactaatgg gcaatctccc      5160
     acctgtacga gtaaccagag ccttcccctt tgagaacgtt ggggtcgatt ttgccggtcc      5220
     tatcttcctt cgcgctgcca atagaagagc ggctcctgta aaggcgtacg ttgctgtcta      5280
     tgtgtgcctc gcagttaagg ccgtgcacct tgaccttgtc cccgacttga cttcagaggc      5340
     gttcatcgct agcttgcacc gattcactgg tcgacgtggc aagcctaacc acatttactg      5400
     tgacaatggt cgcaattttg tgggagctca acgcgaatta gcggagcttc gtaaactatt      5460
     cgtttcccaa cagcataaag atgtcgtcac tcgtgattgc gctgtaagta acattgaatt      5520
     ccatttcatt cctcccagat cgccatcgct tggcgggatc tgggaagcgg cggtaaaatc      5580
     aatgaaattc catctccgcc gaatcatggg aaacgctatg ctaactgaga ctgaatttag      5640
     aacagcgctc atacaagtcg aggccgcttt gaattcaagg cctctaacta gtatgtcgga      5700
     ggacccgcta gaccttcagc ccttgactcc cgggcatttt ctagtgggaa gaccactgaa      5760
     cgccatcccg gagcccaact tgcaagatgt tccagagaat cgcttgtccc gctggcaacg      5820
     cgtccagaaa ctaagccagc agttttggcg acgttggcag aacgattacc tgagcactct      5880
     tcacaatcgc taccgctggt cgaactgtac agccaacctg gtccgtggtg ccatcgttct      5940
     ccttcgggat gaaaatctgc cgcctcagaa gtggtccgtt ggaagaattg tagacgttca      6000
     cccaggaacc gatggactcg tgcgtgtagc ttcagttcgg acaagttccg gaatcacgaa      6060
     gagaggtgtg acccaactat gcttgttacc gatcgagatc aatccagagg acgttcagca      6120
     acaatctccc gcaacaaatg acactggcgc cgatgaagaa taaacaattc ttggcggccg      6180
     gaa                                                                    6183
//
ID   BEL-786_AA-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-786_AA-I;
KW   BEL-786_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-340
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-340
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 167-167 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 340 BP; 100 A; 63 C; 64 G; 113 T; 0 other;
     tgttaactga gcagaagaga taattatttt gttttgcttt ttttgaaaca ccctaatttg        60
     ggttaacttt cccaccctat ttgaattgta tccttttcga ttttcattca aacctttgac       120
     actaacacat atgagagaat gaatgtgaaa cgcacagaac taaaataaaa gtagtatgta       180
     gcaaacagtt aatctgtccg ggcgtgtttt tttattactt gtcccgaagt atcaccgcga       240
     gtgcctaaac caaaagtgtc cattttggat cgaaggccgg tttccgaaat tttgctttgc       300
     ggtctatggc cggaaccgga taaaagttct agatttaaca                             340
//
ID   BEL-787_AA-I repbase;    DNA;    INV; 6454 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-787_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6454
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6454
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 251-251 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           654..5984
FT                 /product="BEL-787_AA-I_1p"
FT                 /translation="MSKLRELTHQERFYMDTMANLKQFMERFDPARDKNQL
FT                 EGWKQRIETVNKDFQSNRLSLELLFEETNEDSSADTKREAEKLNRHIRQKF
FT                 EHDYIVGYGFLTTKISELNAPPQSSTQLVAAMSATNPPQSRIKLPEVKLPT
FT                 FDGSISEWITFRDTYKSLIDSNTQLSQIDKFSYLVASLTKDARKVIESIEL
FT                 TEANYAVAWQLLEKRFDNKKLVVKTYIDSLFAIEPMKRECYDSLMRLIDDF
FT                 ERNLCLISKMGIQTDSWSVLLAHMVCSRLDPFTLRQWEAHHKSTDVPQYED
FT                 LIDFLRTHLMVLQSLVPSKSRSFDSPKPEPNRPSKHSKFNTVHTITNSTPS
FT                 SCPFCSKNPHSPFKCDVFLKMAVSQRFDQVKRKNLCINCLSSSHLLKGCSS
FT                 SGCRVCNQKHHTMLHQPPSDRSSSQQKPNTPSVVGLNSQSNQSTSSNQSSS
FT                 PSRSTPSSESHPPAASAPLSSLVSATLVGSSRRVPATVLLQTAIIKVFVSD
FT                 GSAQWARALLDPASQLSLITENMVQKLKLQRYPSRQEIGGVGNTFVVSHHA
FT                 VDVRLGSHCTEYTVVEPCHILKRITRELPANAIDSSQWKIPPGITLADPKF
FT                 HEPGAIDLLLGMELYYELLLEGFIKLGPEEPVLQNTVFGWVAAGRVGVQPH
FT                 QGQRKVAHVCSTGDSEDSISRFWELESCWSPSIQSPEESSCEEHFIANTFR
FT                 DESGRFVVTLPKRPDVLSQLGHSKEIATRRFHALERRLEANPQLKEAYSAF
FT                 ISEYLQLNHMQEIEDNDNCFPSYYLPHHGVEKADSTTTKLRVVFDASCRTD
FT                 SGVSLNQALLVGPVVQDDLYAISLRFRMRQYAIVADAEKMYRQIRLHPSDF
FT                 PLHRIFWRQSPSEPLKTFELTTVTYGTASAPYLATRCLLELSRQGSKEFPQ
FT                 AAEVLAEDFYIDDMLTSVDDEEDGAELCKQLRSLLQSGGFSLRKWASNSED
FT                 ILSVIPPQLRDERSMLTLDTPSTIKTLGLIWEPSTDLLHYSVPKWSQTDSI
FT                 SRRTVLSDTAKLFDPLGLVGPVVVLAKIFVQSLWRTSNSWDDPLDDCQQQY
FT                 WLAFRSSLDALSSISVPRWVAFANAPVNVELHGFCDASIRAYGACIYIRTV
FT                 SSDGSIAVRLLTAKSKVAPLGDSKRQKTVSLPRLELSAALLLSHLYHKVNS
FT                 SVTISTRPFFWSDSTITLHWINSVPSRWKTFVANRVSEVQHLTTNGVWAHV
FT                 SGLDNPADIISRGMEPSQLKDSIWWTGPSWLKQPSRFWPPIIQADLPEFPK
FT                 EALEERSVSLPIRVHEPSEIFRLRSSFIALVRLIAQIQRFAHNSKPENRSN
FT                 RRSGFLRTTELNEAVRTLVRLAQSEVFSNDIAAIASGGHVKPNSPLKNLHP
FT                 VVKQGVLRVGGRLRHAPIPDDRKHPMILPARHPLTEIILRYYHLKHLHAGP
FT                 QLLVACVREKFWPLRIRNLARNVVHSCVNCFRCRPSVLEQLMGDLPPERVT
FT                 PTLPFLNTGVDLCGPFQYRKVRKSLPTKCYIAIFVCLATKAIHVEMVYDLS
FT                 TAAFIAAMRRFIARRGKPSSIHCDNARNFKGAARELANLAKQFHSQQHQAA
FT                 VVDHCANDGIMFKFIPPRSPNFGGLWEAAVKSFKQHLRSTIGNSVLSQDEF
FT                 VTLLTRIEACLNSRPITPISADPNDLEVLTPGHFLVHRPLTSFPEPDLSDI
FT                 PRNRLDRWQENQELLRRLWKRWSTDYLSGLHPRTKWTQLRNNIGVGTMVLL
FT                 KEDNLPPLKWRYGRITQVIRGQDGNIRVVDVKTSDGEFRRAISKICVLPVR
FT                 TDGIDH"
XX
SQ   Sequence 6454 BP; 1614 A; 1687 C; 1534 G; 1616 T; 3 other;
     tttttggtcc tggccgaacc ggatcaaccg cgagtagtgt cgaaaaatcg cggtgatatt        60
     cgctatccgt cgcggttact ttcctgagca gaaagtacgg acaaaagtgc gccaatttcg       120
     ttccttttcg gcgcgagttt ctgatcacag tgctgctaag ctaagggcct gtggatcaac       180
     gcggtgggag atacatcaaa agtgcgcgaa agatccttaa ttaaaagtga tctcggaaga       240
     aatagtgcta gttgcagtta gcggaccagc gtgcaggagt ttaaattcgt ccactcatct       300
     ggagcaggca agcgcgtggt gacgccaacc gtggcttggc ttgggtcctt tgtgtgtcac       360
     cggacaatag agcattcatc tggggacgtt gaccgatgcc gttgtaagcg tggtggagct       420
     cctgtaagta ccgcatgcga gttgaagcgt cgagtgatga cgagtttttg tgaaaaatta       480
     aaggggatct gttagtttca tttgcatgcg attcgttttc ttgctgatca tttttttgat       540
     tttgcattcg cttgctttca tcccttgcta gttgaggtgc atagtgtgct ctggttgttc       600
     aggttggtca cctggttcgt atcgtggatt atttgattga ttagaggagc aagatgtcga       660
     agctaaggga gctaacgcat caagagcgtt tttatatgga tacgatggcc aacttgaagc       720
     aattcatgga gcgttttgac cctgcgcggg ataagaacca acttgaggga tggaagcaac       780
     ggatcgaaac ggttaataag gattttcaga gcaatcggtt gagcctcgaa ctgttgtttg       840
     aggagacaaa tgaggattcg tctgccgata ccaaaaggga agcggagaaa ctaaatcgcc       900
     atattcggca gaaattcgag cacgattaca tagtgggtta cggttttctc accaccaaaa       960
     ttagtgaact gaatgcccct cctcagtctt ccactcaact cgtagcagca atgagtgcca      1020
     caaacccccc tcagtcccga atcaaacttc ccgaagtgaa gcttcccact tttgatgggt      1080
     ccatttctga atggatcact ttcagagaca cttacaaatc tctgattgat tctaacactc      1140
     agctatcgca gatagacaaa ttttcttacc ttgtagcatc gctcaccaaa gatgctcgca      1200
     aggtaatcga atcgattgag cttaccgaag caaattatgc tgtagcatgg cagcttttgg      1260
     agaaaaggtt tgataacaag aagttggtag taaaaaccta tatcgattca cttttcgcca      1320
     tcgaaccaat gaaaagagaa tgctacgatt ctctaatgcg tcttattgac gattttgaac      1380
     gcaacttatg cctgattagc aaaatgggca tccaaacaga tagttggagc gtgcttctag      1440
     cacacatggt ctgcagtcgt cttgatccgt tcacccttcg gcaatgggaa gcccatcaca      1500
     agtctaccga tgttccccag tatgaggacc taatcgactt cctgcgtacg catctgatgg      1560
     ttcttcagtc gttggtgcct tcgaaatctc gttcgttcga ttcacccaaa ccggaaccaa      1620
     accggccgtc gaaacattcg aaatttaata cagtccacac catcacaaat tcgacgccca      1680
     gttcctgtcc gttctgttcg aagaatccac actcaccatt caaatgcgac gtgttcctga      1740
     agatggccgt atcccaacgc ttcgaccaag tgaaaaggaa gaatctgtgc ataaattgtc      1800
     tctcctcttc gcatctcctg aagggatgtt cgtccagcgg atgtcgggtc tgcaaccaga      1860
     agcaccatac tatgctacat caacctccta gcgatcgctc gtcctcgcaa cagaaaccaa      1920
     atacaccttc tgttgtgggt ttaaattcac aatcgaatca atcaacctcc tcgaatcagt      1980
     cttcctcgcc ttctcggtcc actccatcgt ccgaaagcca tccaccagcc gcctctgctc      2040
     cactttccag tctcgtttcc gccactctcg tcggtagcag tcgaagagtt cctgctacag      2100
     ttttgctgca aaccgccatc atcaaggttt tcgtttccga cggaagcgcc cagtgggcaa      2160
     gagcactgct ggatccagca tcgcaactat cgttaattac cgagaacatg gtacagaagc      2220
     ttaaattgca acggtatccc agtcgtcaag aaattggggg agtaggaaac acatttgtcg      2280
     tttcacacca cgctgtggat gtccgattag ggtcacattg caccgagtac actgttgttg      2340
     aaccctgtca catcctgaag agaatcactc gtgagctccc tgctaatgcc atcgattcct      2400
     cccagtggaa gattccaccg ggaattaccc tagctgaccc gaaattccat gaaccgggag      2460
     caatagacct actgttaggt atggaattgt actacgaatt actgctggaa ggattcatca      2520
     agttgggtcc agaggaacct gttcttcaaa acaccgtttt cggctgggta gctgccggaa      2580
     gggtaggagt tcagccccat caaggtcagc gaaaggtggc tcatgtttgc agcacgggag      2640
     attccgaaga ttcaatctct cgtttctggg aactggagtc ctgctggtcg ccgagtattc      2700
     aatctcccga agaatcttct tgcgaagaac acttcatagc caacacattt cgtgatgaat      2760
     cgggccgatt tgtcgtcact ctacctaagc gtcccgatgt actgtcacag ctcggccact      2820
     ccaaagaaat tgccactcgc agattccatg cactcgaacg tcgcctggag gccaacccac      2880
     agctcaagga ggcatattcg gccttcattt cggagtactt gcagctcaac catatgcaag      2940
     aaatcgaaga caacgacaac tgttttccat cctactacct tccacatcat ggcgtggaaa      3000
     aagcagacag tacgaccacc aaactaaggg tagtgttcga cgcctcctgt cgaacggact      3060
     ctggtgtgtc gctgaatcag gcattgctgg tgggacctgt cgtacaagat gatttgtacg      3120
     cgatatcgct tcgcttccga atgcgtcaat acgccatcgt cgccgacgct gaaaagatgt      3180
     atcggcagat tcgcctgcat ccatccgatt ttcctctcca tcgcattttc tggcggcagt      3240
     ctccctcaga gccgcttaag accttcgaac tcaccaccgt cacttacggw acggcctcgg      3300
     caccgtattt ggccaccaga tgccttctgg agttgtccag gcaaggatca aaggagttcc      3360
     ctcaagctgc agaagtcttg gcagaggact tctatataga cgacatgctc acgagtgtcg      3420
     acgatgagga agacggtgca gaactttgca aacagcttcg aagtttgcta cagtccggtg      3480
     gtttcagctt acgtaagtgg gcctccaatt cggaagatat tttatcggtt attcctccac      3540
     aattacgtga tgaacgttcg atgctcactt tggatacacc atcaacaatc aaaacgcttg      3600
     ggttgatatg ggaaccatca acggatctac tccactattc cgttccgaaa tggtcgcaga      3660
     cagatagcat ctctagacgc actgtattgt cggacacggc gaaactcttc gaccctcttg      3720
     gtttagttgg gcccgtagta gtgctggcca aaatcttcgt ccaatctctc tggcgaacct      3780
     cgaactcctg ggacgatcct ctcgacgatt gccaacaaca gtactggcta gcattccgca      3840
     gcagtctcga tgcattatcg tccatttccg ttcctcgttg ggtagcgttc gcaaacgcac      3900
     cggtcaatgt tgaattgcac gggttctgtg atgcgtcgat cagagcctac ggtgcatgta      3960
     tctacattcg aaccgtctcc agcgacggca gcattgctgt acgattactg acggccaaat      4020
     ccaaggtagc tcctctgggg gactccaaga ggcagaaaac ggttagcctg ccaaggttgg      4080
     aactatcggc agcgctactt ttgagccacc tctaccataa ggttaactct agcgtcacta      4140
     tcagcacccg gccatttttc tggtcggact ccactatcac tctccattgg atcaactctg      4200
     ttccctcaag atggaagact tttgtggcga atcgtgtttc agaggtccaa cacttaacaa      4260
     ccaacggtgt atgggctcat gtttcgggct tagataatcc cgcggacata atctcccgtg      4320
     gaatggaacc cagtcagctt aaggactcga tctggtggac aggaccatct tggttaaagc      4380
     aaccgtctcg tttctggcca cccatcatcc aagcagacct gccagagttt cccaaggaag      4440
     ctttagaaga acgatcggtg tcgttaccaa ttcgggtgca cgaaccgagt gaaatatttc      4500
     gtctgcgctc atcctttatt gctcttgttc ggcttattgc acaaatccaa cgtttcgctc      4560
     acaactctaa gcccgagaat cgctccaatc gaagatcagg atttctacgg actaccgaac      4620
     taaatgaagc agttcgaact ttggtgcggc tggctcaatc cgaagtattt tcgaacgata      4680
     tcgctgcgat agcttccggt ggtcatgtaa aaccgaactc tcctctgaag aatcttcatc      4740
     ctgttgtcaa acaaggcgtt ttgcgcgttg gaggacgctt gagacacgcg ccgataccgg      4800
     acgacaggaa gcatccaatg atcctccccg cccgacaccc gctgactgaa atcattttgc      4860
     ggtactatca tctcaaacat ctacacgccg gaccgcaatt gttagtggca tgcgtccggg      4920
     aaaagttttg gccacttcga atccgtaatc tggcacggaa tgtggtccat tcgtgcgtca      4980
     attgttttcg ctgtagacct tcggttctgg agcagctcat gggagacttg cctccggaac      5040
     gtgtcacgcc aactttgcct ttcctcaaca ctggtgttga cctttgtggc ccatttcaat      5100
     accggaaagt ccgcaaatca ttgcctacca aatgttacat cgccatcttt gtttgcctgg      5160
     caacgaaggc aatccacgtg gaaatggttt acgatctctc aacggccgcc ttcattgcgg      5220
     caatgcgtcg ctttatcgcc cgtaggggca aaccgagttc cattcattgc gacaatgctc      5280
     gcaacttcaa gggagcagca cgagaattgg cgaatttagc gaaacaattc cattcgcaac      5340
     agcatcaggc agcggttgtg gaccactgcg ccaacgacgg aatcatgttc aaattcatac      5400
     cgccccgcag cccaaacttt ggagggctgt gggaggcggc agtaaaatca ttcaagcaac      5460
     atctccggtc aaccattggc aactcagttc tgtcgcagga tgaattcgtt acgctgctaa      5520
     cacgtatcga agcctgcttg aactccagac cgatcacgcc tatctcagca gacccaaacg      5580
     atctggaagt gttaactccg ggccatttct tagttcaccg cccactcacg tctttccctg      5640
     agcccgacct ttctgacatc cctcggaatc gtctggatcg ttggcaggag aaccaagaac      5700
     tccttcggcg attatggaaa cgctggtcta cggactactt gtccgggttg cacccacgta      5760
     ccaaatggac gcagctccgg aacaacattg gtgtgggcac aatggtgctc ctcaaggagg      5820
     acaacctccc tccactgaag tggagatacg gccgaataac ccaagtcatc agaggacagg      5880
     acggcaacat cagggtggtc gacgtgaaga cgtccgatgg agaattccga cgtgccatct      5940
     ccaagatatg cgtactccct gtacgtactg atgggatcga ccactgacct ctacaatcgc      6000
     ggtatttcga tactgcgcaa cgatcggggg cctgcgggcc tccgaaccct gtaagtattg      6060
     ttttttaatg aatttgcaaa aagcttaaga atttttcgtc ctccggcatg taccctggat      6120
     tcttcgacgg cggctccatc ccggttcgag tacgcccaac cccgatgtct aactggtgtt      6180
     caaccggttt gagtaagcga cgagcgatga cgtcaccagt accatccgcg caagcaatca      6240
     agttcaacga ccggagcagt gatagagtac ccgatcgatg gccagacggt gcgtaggtcg      6300
     atgacttctt tgttgagaag gagaaccaaa acaaaccacg aggagagtcg tctgtccccg      6360
     gagagccaac aggacccgag aaggatgaga agatgcmtta aagtgtagta gtgttttggt      6420
     tgaaaggcct awcctttcaa cgggggccgg cgta                                  6454
//
ID   BEL-787_AA-LTR repbase;    DNA;    INV; 412 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-787_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-412
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-412
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 233-233 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 412 BP; 127 A; 101 C; 61 G; 117 T; 6 other;
     tgttaacgca aaccctatac ccccwtatca gttagtatat aagaaagcta tattgatctc        60
     tctcgatcac ctaccwtcga tttaccatta gattaccctt ccttatcgct agccttcagc       120
     tagcgagaga agagaatwat ctckgaatag gccttttctc atgagtagat actcttaccc       180
     acawcktaat tagctctcga attcgcatat attgccatac acgaaccaga ttcagttcag       240
     ttgaaatata atatccaaat cgtacacacg tcatatcaaa ctatctgtcg atagaaagta       300
     gagtgctata attaaaccaa attcacccgg aataaaagtg ttcgtcattt cgaagtccgt       360
     cgcgttttta gttccgtgat ttccgaaacc gaccaaagta tccgcgccaa ca               412
//
ID   BEL-788_AA-I repbase;    DNA;    INV; 6685 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-788_;
KW   BEL-788_AA-I; BEL-788_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6685
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6685
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 252-252 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1353..6569
FT                 /product="BEL-788_AA-I_1p"
FT                 /translation="MASKDLKTLKARLRGLRATFSNIRRFVSEMKQDVTVS
FT                 QINVRISRLDELWQSINETCWDIQAQEEFEEGDSFLKEQSDFEASFYDVKS
FT                 FLLDKVNELSGVNPQIPTNRGDESFLHGAVDHVRLPQIKLQCFDGNIDEWL
FT                 SFRDIYTSLIHHKADLPPVEKFHYLKGCLEGEAKALLDPLKITAANYQIAW
FT                 DTLLKRYNNSKLLRKRQVQALLKLPSLAKESVGELQRLVEGFDRAVQNLDQ
FT                 VVEAVEYKDLLLVELLSCRLDPTTRRGWEEYASAKDKDTVKDLLDFLQRRI
FT                 QILESLPMKTETRNDSTSQNKRKPFFQRASHNAIQSNSSKCPSCSEVHGLH
FT                 ICPNFLKLPMSNRESFLRSHSLCRNCLKGGHIARECSSKYNCRKCKARHHT
FT                 VMCFKSEERSSHHSSTEAEISTEGAAQFSSVSNLQTSSGTMSSNMANMSSS
FT                 QILLATAIVLVEDNQGSRYPARALLDSGSECNFISEGLSRLMKVSGKKVDI
FT                 SIQGVGQTNTRVTRKIEATVKSRTSEYSRSMEFLILPNVTACLPTATVKIN
FT                 GWNLPQEVELADPEFFRSRKVDIVLGIQAFFSFFQSGKEISLGEGLPTLTD
FT                 SVFGWIVSGEIYPPVDGTVQGRFSCNIAISDNLVELLSRFWSCEEVGAVNS
FT                 YSPEETRCEEQFGRTVRREADGRYTVTLPKDEQILQQLGESREIAEKRLLS
FT                 VERRLSRNPDLQVQYYDFMAEYLELGHMRRVVSSDEAVKRIYLPHHPVIKE
FT                 SSTTTKVRVVFDASCKTSTGISLNDALFAGPIVQQDLRSIILRSRFRQVMV
FT                 VSDVEKMFRQIWVNEHDTPLQCILWFGPDKDIATYELSTVTYGTKSAPFLA
FT                 TRTLKQLAEDERGRFPLAAKAIDEDVYMDDVISGADDVESAIDLRCQFNDL
FT                 LLSGGFRLRKWASNRPEVLKDIPEENLALPTVEGIDWDRDAEVKTLGLTWL
FT                 PNADCFKFQFNIPPFVEGQHFTKRNVLSIVARLFDPLGLLGATITTAKVFM
FT                 QRLWTLGNEKDRKLDWDERLPQTVGEEWRNYHEKLPLLNTIQVSRCVIPPK
FT                 ARSVEFHCFSDASMVAYGATVYVRSEEQDGTVTVHLLTSKSKIAPLKVQSL
FT                 PRLELCGALLSAQLWEKVSNAMKMDVNIHFWTDSTCVLQWIKSAPGTWTTF
FT                 VANRVAKIQAITEGHSWGHVSGKTNPADLISRGILPNEILKNELWWNGPKW
FT                 LKTPKEQWKSDPIPNQIPQEMRKTSASCTAKETSFVSDFVERFSDYNRLIR
FT                 STAYWLRLIAILKHDDEHKKGFLTTIELQQAEMLLVSKVQQDHFPMEIKAL
FT                 NQGHSVARNSPLRWFYPRITEDGVLRVGGRLSHSNSPESAKHPMILPAKHH
FT                 LTELIFRHYHLRMLHAGPQLLLATVRQRYWPLGGRNGARKIVHRCQRCFRA
FT                 KPSRIEQQMGELPSARVTVARPFSKTGIDYFGPIYIKAGRRQAAIKSYVAV
FT                 FVCMATKAVHLEHVSDLSTECFLQALRRFFARRGRCTDIYSDNGTNFVGAK
FT                 NRMLELCKLLQNQDHREIVTNECCSEGVQWHFIPPGAPHFGGLWESAVRST
FT                 KYHLLRVLGENPVSAEDFRTLLAQVEGCLNSRPLTPITDDPTDLEPLTPAH
FT                 FLTGGSLQTLPDPDLSSVQLNRLDRWQLVQRQLQDFWRRWRTEYLSQLQAR
FT                 NKNWKPAVDIVEGSLCVIVDSLQPPMKWKMGRIIQLHPGADGVTRVVTLKT
FT                 ANGTMKRAINKICLLPAQH"
XX
SQ   Sequence 6685 BP; 1811 A; 1484 C; 1630 G; 1751 T; 9 other;
     taaactggtc cttcgaaccg gattctatcg accggtgaat cgttggttgg gacctggaag        60
     ctagttccgc catcgcgcaa ggsccgagga agcctttaca agctgaaaga gcgcgcgcca       120
     tcatcaaggc ccattattkc cacctgaaag gatcttcgcc atcacagaac atctttatgc       180
     aacataaagg atatgcgcca tcgcaggaca cggtgaatam gawcatmgcc attacgackg       240
     gctgwttcga ctacaaggca ttgccccatt ggtmwgccgc gccattccga gcttctggag       300
     gacaaccgat taggatcgat aggctggtgg tgttgctggt ctcaagcaaa ccttcgtcga       360
     agctatcgtc atcgaatttg gacgcctttc gaggatttcg aggatcttca ggactacgta       420
     gacggcctta gtgctgttct accaccggtc aggtaggtta gaacaagtat atgtctggcc       480
     gaagcccact ttccgttttc taacaccacc atttcgatct ggtttctatt cccccttgga       540
     cgaacttcaa acaaccgccg gtgtgctaat cgatgtgcga gcgaactgat cgatcgatgg       600
     ggacttatgg tgaatgtggc cacgatctgg tgaacgaccg ctaaacggga tcgaaggaag       660
     ctagaggaca tcgacgacac cattcgagct tgggcaacgc tgcatagtcc tgtctgtcag       720
     gtaaacttac ttggccagcc gaagctggtt tgcccacaac aataaatttt acccttttcg       780
     acggagtttg gctcaaattt cttacggacg caagccctat actcaaatgc ttcactggtc       840
     gaagctttga ggtacctttg gcgccatctt tagttctcca ggtgagacta agagtatatg       900
     tcctgccgtg gcaggccccc cccttgatac tacattggtt ttttctcctc tgatgcactg       960
     gattgcttga tcgagacgaa tttaaatgtg ctgctgtaat cgaatgcgaa tgtgacgtgc      1020
     gaatctggct gttggcgtaa tctgtaattc tctaggtgag ctttacagta tatgtacagc      1080
     cgaagttgac attttttgca tactacatcc gcccttttct gccttttttt tgttgtcact      1140
     ggatcgattt ggagtttggc gttactacat tacgcataca cgtgaaaggc tatcgctggt      1200
     ttcaatattg gacttgatcg gcttcgggag tgatactgct ttctctcaca ggtgaggtga      1260
     acagtatatg ttcagccgaa gcaagacatt ttttgaaact acatccacgt atcctttcgc      1320
     tttttggaat ccaacttctg cgagactcca cgatggcatc caaggacttg aaaactttga      1380
     aggcgagatt aagaggactt cgcgccacgt tcagcaatat tcgacgattt gtgagtgaga      1440
     tgaagcaaga tgtaacggtc agtcagatca atgttcgaat ttcacgtctc gatgagttgt      1500
     ggcagtctat caacgagact tgttgggata ttcaagcaca agaggaattt gaggagggcg      1560
     atagtttcct aaaggagcaa tctgacttcg aagctagttt ttacgatgtg aagtcgttct      1620
     tattggacaa ggtgaacgag ttaagcggtg ttaatcctca aattccaacc aatcgaggag      1680
     atgaaagttt tctacatggt gcggtggacc atgttcgtct gccgcaaata aaactacagt      1740
     gtttcgatgg gaacattgat gagtggctga gcttcaggga catttacact tccttgattc      1800
     accacaaggc agatttacca cctgttgaga aatttcacta ccttaagggt tgtcttgaag      1860
     gagaggccaa ggcactacta gatcctctaa agatcacagc ggccaattac caaattgcct      1920
     gggatacgtt gcttaaacga tacaataata gcaaactttt gagaaaaagg caagtgcagg      1980
     cgttgctaaa actaccctct ctggccaagg aatctgttgg tgagctacaa cgattagtgg      2040
     aaggattcga tagagctgtc caaaacttgg atcaagtagt tgaggcggtt gaatataagg      2100
     atttattgtt ggtggaactc ctcagttgta gattggatcc tacaactcgg cgtggttggg      2160
     aggaatatgc gtctgctaaa gacaaggaca ctgtcaagga tcttcttgat tttcttcaac      2220
     gacgaattca aattctggaa tcattgccga tgaaaacaga aacgagaaat gactctacgt      2280
     cacagaataa gcgtaaacca ttctttcaaa gagctagtca caatgcgata cagtccaata      2340
     gttcaaaatg cccgtcctgt tctgaggtcc acggattaca catctgccct aactttctga      2400
     agttgccgat gtccaacagg gaatcttttc tgcgaagcca ttctctttgc cgcaactgtt      2460
     tgaaaggagg tcacatcgca agggagtgtt cgtcgaagta caattgtcga aagtgcaagg      2520
     ctaggcatca taccgtaatg tgcttcaaat ccgaggaacg cagttcacac cacagttcaa      2580
     ctgaagctga aatttcgact gaaggagctg cgcaattctc atcagtttca aatctacaga      2640
     cttcatcggg aacaatgtca tctaatatgg ccaacatgtc gtcttctcag attctccttg      2700
     caactgctat tgttcttgtg gaagacaatc aaggatcacg ctatcccgct cgtgccctac      2760
     tagactctgg ttcggaatgt aattttattt cggaaggtct tagtaggttg atgaaggttt      2820
     ctggaaagaa ggtcgacatt tcaatccaag gagttgggca aacaaatacg agagttacac      2880
     gaaagattga agctacagtc aagtctcgaa catcggagta ttcaaggtcc atggaatttc      2940
     taatcctgcc gaatgttaca gcatgtttgc ctactgctac ggtgaagatc aacgggtgga      3000
     atctaccaca agaagttgaa ctagcggatc cagagttctt ccgttccaga aaggtggaca      3060
     tcgttttggg aattcaagca ttcttcagtt tcttccagtc ggggaaggaa atatcgctgg      3120
     gtgaaggcct gcccacactc acagattcag tttttggatg gattgtatcc ggtgaaatct      3180
     acccaccggt ggacggtaca gttcaaggtc gattctcatg caacattgca atttcggata      3240
     acttggtgga attattgtca cggttttggt cctgcgagga agtgggagcc gtcaatagct      3300
     attcgccgga ggaaacgcgc tgtgaggagc agtttgggcg tacagttcga agggaagcag      3360
     atggtcgcta caccgttact cttcccaagg atgagcaaat cttgcagcag ctcggagaat      3420
     caagggaaat tgcagagaaa cgactcctaa gcgtggaacg gagattatca agaaacccgg      3480
     atcttcaagt gcagtactac gattttatgg ccgaatattt ggaactaggc catatgcgaa      3540
     gggtggtgag cagcgatgaa gcagtcaaac gaatttatct gccgcatcac cctgttataa      3600
     aggagtcaag caccacaact aaggtcaggg tggtgtttga tgcgtcctgc aagacgtcta      3660
     caggcatctc actaaacgat gcgctgtttg ctggacctat agtacaacag gatttgaggt      3720
     cgatcattct tcggagccgg ttcagacagg ttatggtggt ttccgatgta gaaaagatgt      3780
     ttcgacagat ctgggtcaac gaacacgaca cacctctaca gtgtattctt tggtttggac      3840
     cggataagga tattgcaacc tatgaactta gcacggttac ctatggtacg aagtcagctc      3900
     cattcctagc tactcgtact ctcaaacaat tggctgaaga tgaaagggga agatttccat      3960
     tggccgcgaa ggccattgac gaggatgtct acatggacga tgtaatttcc ggagcagacg      4020
     acgtggagtc tgctatcgat ctacgttgcc aattcaacga tttgctgcta agcggaggat      4080
     ttcgactgag gaagtgggcg tctaatcgtc cagaagtgct gaaggacatt cctgaggaga      4140
     atttggcact acctactgtc gaaggaatcg attgggaccg agatgcagaa gtcaaaactt      4200
     tgggactaac atggcttccc aatgcagatt gcttcaaatt tcaattcaat attccaccat      4260
     ttgttgaggg acagcatttc acgaaacgaa acgtgttgag tatcgtcgcc agactcttcg      4320
     atccactagg gctgctaggt gcaacgatca cgactgcgaa ggtctttatg cagcgcctct      4380
     ggacactggg aaatgagaag gatcgcaaat tggactggga cgaacgattg ccgcaaacgg      4440
     tgggtgagga gtggcggaat tatcatgaaa aacttccact tttgaatacg attcaagttt      4500
     cacgttgcgt tattccacct aaggcacgat cagtagaatt tcactgtttc tctgatgcgt      4560
     cgatggtagc ttacggtgcc acggtttacg tgcgaagcga agaacaagat ggcacggtta      4620
     ccgttcatct acttacctcg aaatcgaaaa ttgctcctct aaaggttcaa tccctaccac      4680
     gattagagtt gtgtggagca ctcctgtctg cacagctttg ggaaaaggtg tcaaacgcta      4740
     tgaaaatgga tgttaacatt cacttctgga cagattcaac atgtgtgctg cagtggatca      4800
     agtctgctcc tggaacctgg actactttcg tggcaaatag agttgccaag attcaggcta      4860
     taacagaagg ccatagctgg ggtcacgtgt cgggtaaaac taacccggca gatctaatat      4920
     ctcgtggaat tcttccaaac gaaattttga aaaatgaact ttggtggaac ggacccaaat      4980
     ggctgaaaac acccaaggaa caatggaaat cagacccaat cccaaaccaa ataccccagg      5040
     agatgcggaa aacttccgct tcgtgtacag caaaggagac ttcattcgtt tcggatttcg      5100
     ttgaaaggtt ttcggactat aataggctaa ttagatctac tgcttactgg ctgcgattaa      5160
     tcgcaatact caaacacgat gatgagcaca agaagggttt tttaaccact atagaactgc      5220
     aacaggccga aatgctacta gtaagtaagg tccagcagga tcattttccc atggaaatta      5280
     aggctttgaa tcaaggtcac tctgttgctc gaaactcgcc gttgcgttgg ttctacccgc      5340
     gaatcactga agacggtgtt ctgcgtgttg gtgggcggtt gagtcactcg aacagtccgg      5400
     agtcagcgaa acacccaatg atattaccag cgaaacacca tctaaccgag ttgatcttcc      5460
     gacactatca tctaaggatg ctgcatgccg gacctcaact tcttcttgct accgtacgac      5520
     aacgttattg gccgctcggt ggtagaaacg gcgccagaaa gattgttcat cgttgtcaac      5580
     gttgctttcg ggcaaaacct tcccgcatcg aacagcaaat gggcgaactc ccgtctgcta      5640
     gagtaaccgt cgcacgacct ttctcaaaaa ccggcatcga ttatttcggt ccgatttata      5700
     tcaaggcagg gagacgtcaa gcagcaatta agtcatatgt cgccgtgttt gtctgtatgg      5760
     ctacaaaggc tgtacacttg gaacatgtct cggatttgtc aaccgaatgt tttctccaag      5820
     ccctgcgacg tttcttcgcg cgacgtggga ggtgcaccga tatttattcg gacaatggca      5880
     cgaacttcgt tggagctaaa aatagaatgt tggaattatg caaactgcta caaaatcagg      5940
     atcatcgcga gattgttacc aacgaatgct gtagtgaagg cgtacagtgg catttcatac      6000
     cacctggtgc tccccacttt ggcggcttgt gggagtctgc tgtgcggtca acgaaatacc      6060
     atctacttcg tgttctaggc gaaaatccgg tgtctgcaga agatttccgt actctgcttg      6120
     cccaagtcga aggatgcctc aattcgcgac ctttaactcc catcaccgat gacccaacag      6180
     atctagaacc actgactcca gcgcattttc tcactggtgg atccttacaa acattaccgg      6240
     atccagacct tagttcggtt cagttgaatc gactggatcg ttggcagcta gtacaacgtc      6300
     aactgcaaga tttctggaga cgatggagaa cagaatactt gtcgcaatta caagcccgaa      6360
     acaaaaattg gaaacctgct gttgacatag ttgaaggtag tctttgcgta atcgttgaca      6420
     gtttacaacc accgatgaaa tggaagatgg ggcgaattat ccaacttcat ccaggagctg      6480
     atggtgtgac tagggtagtt acccttaaga ccgccaacgg aaccatgaag agagcgatca      6540
     acaaaatttg tcttttacca gctcaacatt gatgaccata acggagcgtt gcagtagaat      6600
     gtcttccgag gatatccagt gcgtcgaaag gggtgtttct tgtatatttt cagaagttcc      6660
     cgagacactt cagggtgggt gagga                                            6685
//
ID   BEL-788_AA-LTR repbase;    DNA;    INV; 501 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-788_AA-I;
KW   BEL-788_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-501
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-501
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 100-100 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 501 BP; 147 A; 94 C; 137 G; 123 T; 0 other;
     tgttgacgaa caaggtatct gccctgaact aacgcagcca agcaagggaa tctgtcggac        60
     aaggcgagat ccgtattggt cactcaagcg gtcactcaga ttacccatac ccatatgagc       120
     attggactgg acagaacgta gcggagagat cgagagaaga gccagaggat gatcaagaca       180
     gttagttacc atcagtacgt cgtcgcgatc agtcgcaagg ggcgaaccct tgcccgtttt       240
     aatctgttca atgtttagtt ttacgaaata aattagtgtc tagttattaa agttgtagtt       300
     ccttataata aagtgttttt gtgaaactgt tgtggcgtta tcatctgcat gcgaggaagg       360
     aaggtccaag gatgactgga gtataaggat cgaggataag gaaggatcca aggaaatcaa       420
     attggctcaa ggaaaggagg tacgtttctg gcaaggtcaa gtggaggtcg aaccactctt       480
     tcggttggac ggttcccgac a                                                 501
//
ID   BEL-789_AA-I repbase;    DNA;    INV; 6099 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-789_;
KW   BEL-789_AA-I; BEL-789_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6099
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6099
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 253-253 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..6096
FT                 /product="BEL-789_AA-I_1p"
FT                 /translation="MEEHQRPAGYSCKSCTRADAEDEKWVACDSCNLWEHF
FT                 DCAGVDESVKNQTYLCKECNAKTKATPYGTSSSLTHKRPPSKGRSLRSAKS
FT                 ALKPVNKVTQLASKFSRSANSTTSSVRAARLQAQMKLVEEEQLLKEQELEA
FT                 QEAIRKKEMEEEERQLEEKKVLLQAEAKLRQRKLQEEREYQRKQQMIRKES
FT                 LEKKNTIARQLSECSSRGGTIPDSEQQVSLWLQQCSPERAEDEIDSLRSVP
FT                 REALPVINQKPSFTNTAEHQNPNEQSHVDQQFSRLSIGAPNYNRFEDVHER
FT                 AIPKPNQDVPQKQATNANSASQRFNHDFHSYYVNHPMDSLPNAGRQFPMPP
FT                 AEPELEQNMDRQYQQLPYSLPQRNMDPDPSTIPVTLSASQLAARQVMGKEL
FT                 PNFSGNPEDWPIFICSFEQSTAACGYTDAENLIRLQRCLRGHALESVRSRL
FT                 LLPSSVRQVINTLQTLYGRPELLIRTLIEKVHRTPAPRHDRLETVVEFGLV
FT                 VQNLVDHLKAAKQYTHLANPVLMQELVEKLPGALKMDWAIYKSRQPYATLS
FT                 TFGDFMTGLVDAASQVTFELPNHGRSKGEQRVRERSLLHTHSSIAASAPGM
FT                 VNQPVKSGKPCAACERDGHRVVDCHQFKSLDVGKRWEVVHQKRLCCTCLNS
FT                 HGKWPCKSWKGCGIEGCLQKHHTLLHSSSAFPPRNVSVNHLMENNGSYPMF
FT                 RVLPVVLYAGSQKELVFAFIDEGSSTTFLEETIADRLGVSGHVEPLTLQWT
FT                 GNIKREERNSQRIQLDITGENGRTRYKLSEVRTVSCLVLPSQTMNYNDLCN
FT                 RYPHLRGLPLRDYELIRPKLLIGLDNLHLAVPLKVREGGPKDPIAAKCRLG
FT                 WSVYGSLAGTSIPRAVVHFHVAGPANSDCQLNDQLRDYFTLEDAGIKGLSE
FT                 TLESDEERRAIEILQRTTRRTGRGFETGLLWKEDDPNFPDSYPMAVRRLKS
FT                 LERKLEKNPLLKNRVLEQIAEYLRKGYAHIATDSELERADRKRMWFLPLGV
FT                 VIHSKKPSKIRLIWDAAAMVDGVSFNSKLLKGPDLLTPLPAVLSGFRQFPI
FT                 AVCGDIKEMFHQLSIREEDRLAQCFLWRNNSTEPIQLYIMDVATFGATCSP
FT                 AAAQYVKNLNAQEFSEVYPRAATAIVKKHYVDDYLDSFATLEDAVEVVKEV
FT                 TQVHSLGGFEIRGFRSNSTELLREIGQPTDDEPKNLMLERNSTTESVLGMT
FT                 WNPVDDCFSYSFNLRNDLHSILDETHVPTKREVLKVVMSLFDPLGLISHFL
FT                 VHGKVIIQGTWAAGTGWDEPLNDELNKKWRQWVELFPKLNDLKIARCYFSP
FT                 YPSVINELQVHTFVDASDIAYSCAIYFRLVHDGHVQVALVGSKTKVAPLKT
FT                 LSTPRLELKAAVLGVRFATTIVEYHSLPVSRRFFWSDSTTTLAWIRSDHRK
FT                 FHKFVSVRVGEILTLSEPQEWRWVQSRSNISDDATKWKDGPNLDSNSVWFK
FT                 GPGFLRWNEVSWPEQRITTTTHEELRRVQTHWNPETLIEYSRFNKWSKLQR
FT                 ATAYIVRFINSLRRENVGQKLQREILTQEELARAEVLLWKMAQIETFSEER
FT                 KELMKTAGSPDAKHGNVAKSSSIYKTWPYMDAQGILRMRGRIGAADYLPFQ
FT                 ARYPVILPKLHPITNMIVDWFHRRYRHANRETVINELRQHFEIANLRSLVQ
FT                 KVSKNCTWCRINKALPNPPVMAPLPGERLEPFVRPFTYVGVDYFGPLYVKV
FT                 GRSQAKRWIALFTCLSIRAIHMEVVPSLSTESCVMAIRRFIARRGSPAVFF
FT                 SDNGTCFQGASNQLKEELEAMNKAVAVTFTNADTKWKFIPPASPHMGGVWE
FT                 RLVRSVKTALGSVFEHPRKPNDETLETIIYDAEALINSRPLTYIPLESADQ
FT                 ESLTPNHFLLGSSTGNKIEPADIPERATLRSSWKMAQYIVGEFWRRWVKEY
FT                 LPVITRRCKWFKETKDIVEGDLVLVVNGSGRTQWIRGQVEKTFVGSDGRVR
FT                 QALVRTANGVLRRPAVRLAVLDVEEKREPIGLRKDQGHDLGSRAG"
XX
SQ   Sequence 6099 BP; 1750 A; 1422 C; 1513 G; 1414 T; 0 other;
     aaatcttcaa gaattttatt tacgcggggt cgtggaatgg aggaacatca gagacccgct        60
     ggatacagct gcaagtcctg caccagggca gatgctgaag acgagaagtg ggttgcctgt       120
     gacagctgta atctttggga acactttgac tgcgcagggg tagacgagtc ggtgaagaac       180
     caaacctacc tttgcaagga gtgcaatgca aagacgaaag caacccctta cggtacgtcc       240
     tcatctctta cacacaaacg acctccatcg aaaggcagat ccctacgttc tgccaaatct       300
     gcactgaagc cggttaataa ggttactcaa ctggcatcga aattctctcg aagcgcaaac       360
     agcacgactt cgagtgtccg agctgcccgt ttgcaggctc aaatgaagct ggtcgaagaa       420
     gagcaattgc taaaggaaca agagttggag gcgcaggaag cgattaggaa gaaagagatg       480
     gaagaagagg aacgccagct tgaggagaaa aaggtgcttt tgcaagctga agccaagcta       540
     cgacaacgta aattgcagga agaaagggag taccaaagga agcagcagat gattaggaag       600
     gaatcgctcg agaaaaaaaa caccattgca cgacaactga gtgagtgcag cagcagaggt       660
     ggcacaattc cggattctga acaacaagta tccctgtggt tgcaacaatg ttcccccgaa       720
     cgagctgaag atgaaatcga ttccttaagg agtgtacccc gagaagcatt accggtgatc       780
     aatcaaaaac cgtcattcac caacacagct gaacatcaaa acccgaatga gcagtcgcat       840
     gtggaccagc aattttctcg gctctcgatc ggcgctccaa attacaaccg atttgaagac       900
     gttcacgaac gtgcgattcc taagccgaat caagacgtac cgcagaagca agcaacaaat       960
     gcaaactcag ccagtcaacg attcaaccac gatttccatt catattatgt caatcatccg      1020
     atggactcac ttccgaatgc tggacgacag tttccgatgc ctcctgcaga accggaacta      1080
     gaacaaaata tggacaggca atatcaacaa ttgccatact cgttgcctca gcgaaatatg      1140
     gatccagacc catctacgat tcctgtgacg ctcagtgcga gccaactagc tgccagacaa      1200
     gtgatgggga aggaattacc gaacttctct ggcaatcccg aagattggcc aatattcatt      1260
     tgtagctttg agcaatctac agcggcctgc ggctataccg atgccgaaaa cttgattcga      1320
     ctgcagcgat gtttaagagg acatgcgctt gagtctgtac ggagtagact tctacttcca      1380
     tcgagcgtcc gtcaagtgat caacacccta caaacactgt atggtagacc agagcttctc      1440
     atacggacgc ttattgaaaa ggttcatcgt actcctgcac ccagacacga tcgcttggag      1500
     actgtggtag aattcggatt agtggtgcaa aatctcgtgg accacttgaa ggcagcgaag      1560
     cagtacacgc acttggcaaa ccctgtgctg atgcaagaat tggtagaaaa gcttcccgga      1620
     gcactgaaga tggactgggc catctataaa agccgacaac cttatgcgac gttatctacg      1680
     tttggtgact tcatgactgg attagtagac gcagcaagtc aggtaacatt tgaactgccg      1740
     aaccacggcc gttccaaggg tgaacaacga gtaagagaaa gaagtctgtt acacacccat      1800
     tcgtcgatcg cagcttctgc tccagggatg gtaaatcaac cagtgaaatc aggtaagcca      1860
     tgcgcagcat gcgaacgtga tggtcatcgc gtagtggatt gccatcagtt taaatcactg      1920
     gatgtcggta aacggtggga ggtcgtccat caaaagagac tatgttgtac gtgccttaat      1980
     agccacggaa agtggccgtg taagtcctgg aaagggtgtg ggattgaggg atgtctccaa      2040
     aaacaccaca cactccttca ctcctcttcg gcgtttccac ctcgtaatgt ctctgtcaat      2100
     catctcatgg aaaacaatgg atcgtaccct atgtttcggg tgctcccagt ggtactatat      2160
     gcgggatcgc agaaggaact cgtatttgcg ttcatcgatg agggatcgtc gacaacattt      2220
     ttggaggaaa ccatcgctga tcgtctaggc gtatctggtc acgtagaacc gttgaccctt      2280
     cagtggacgg gtaacataaa acgggaagaa cgaaattccc aacgaattca gctggatatc      2340
     accggtgaaa atggtcgaac ccgttataag ctgagcgaag ttaggacagt cagttgttta      2400
     gtcttgcctt ctcaaacaat gaattacaac gatctctgca accgctatcc acatttacgg      2460
     ggacttccac tgagagatta tgaattgatc cggccaaagc tactaattgg tttggataat      2520
     cttcaccttg ccgttccgtt aaaagtccgc gaaggtggac ctaaagaccc gatagctgct      2580
     aagtgccgat tgggttggag tgtctacggg agtttagctg gaacatctat accgcgagct      2640
     gtcgttcatt ttcatgtagc tggaccagca aatagtgact gtcaattgaa cgatcagctc      2700
     cgagactatt ttacattgga agatgccgga ataaaggggc taagcgaaac actagagtcg      2760
     gatgaagaga gacgtgcgat tgaaatatta caacgaacca cgcgacggac aggacgggga      2820
     tttgaaactg gacttctgtg gaaagaagac gatccgaatt tccccgacag ctatccaatg      2880
     gcagttcggc ggttgaagtc tttggagcgt aagttagaaa agaacccatt gctgaagaat      2940
     cgtgttctgg agcaaattgc cgagtactta cgaaaaggat acgcccacat tgccactgat      3000
     tcggagcttg aaagggcaga ccgcaaacgt atgtggttcc tgccgcttgg agtggtcatt      3060
     cattccaaga aacctagcaa aataagatta atatgggatg ccgcagccat ggtagatgga      3120
     gtctccttca attccaagct tttgaagggt cctgatcttt taacaccatt accagcagtg      3180
     cttagtggct ttcgtcaatt tcccattgcg gtctgcggtg acatcaaaga gatgtttcac      3240
     cagctctcaa ttcgcgaaga ggaccgttta gcacaatgtt tcctatggcg gaacaactct      3300
     acggaaccta ttcaactcta catcatggac gtagcgacgt tcggcgcgac ttgttctccc      3360
     gctgccgcgc aatacgtaaa aaaccttaac gcgcaggagt tctccgaagt ttatccacgt      3420
     gccgccaccg caatcgtaaa aaaacattac gtggatgact acttggacag ctttgcgacc      3480
     cttgaagatg ctgtggaagt agtgaaggag gtaactcaag tacactcgct gggaggattc      3540
     gagattcgag gctttcgctc taactcaaca gaacttctcc gggaaatagg tcaaccaacc      3600
     gatgacgagc cgaagaactt gatgctagaa aggaactcca ctactgagtc cgtgctagga      3660
     atgacctgga atcctgtcga tgattgtttc tcctattcct tcaatctgcg aaacgatctc      3720
     cactcaattc tcgacgaaac acatgttcct accaagcgtg aggtcctgaa ggtagtaatg      3780
     agtctcttcg atcccctcgg gcttatctca catttcctcg tccacggaaa ggttatcata      3840
     caaggaacat gggcggctgg aacgggatgg gatgagcctc tcaacgacga actcaataaa      3900
     aaatggcggc aatgggttga actttttcca aaactgaacg atttaaagat tgcgcggtgc      3960
     tacttttcac catatccgtc agtaatcaat gaactgcaag tccatacgtt cgtggacgct      4020
     agtgacatcg cctattcttg cgcgatttat tttcggctgg tacacgatgg ccatgtgcag      4080
     gtagcgctgg taggctccaa aaccaaagtg gcacccctaa aaactttgtc cactccgcga      4140
     cttgaactga aggcggcagt ccttggagta cgattcgcca cgacgattgt tgagtatcac      4200
     tcgcttcctg tatctagaag gttcttctgg agcgactcaa ccactacact ggcgtggatc      4260
     cggtctgatc atcgcaaatt tcacaagttt gtgtcggtac gagttggtga aatcttaaca      4320
     ttgagcgaac cgcaagagtg gagatgggtg caatcaaggt ccaacatttc cgatgatgcc      4380
     acaaagtgga aagatggacc gaacttagat tctaatagtg tctggtttaa gggacctgga      4440
     tttctacgat ggaatgaagt atcgtggcca gaacaacgta ttacaaccac aacccatgaa      4500
     gagctacgaa gagttcagac acattggaat cctgaaaccc tcatagaata ctctcgattc      4560
     aacaaatggt cgaagttaca acgagcaact gcatacattg ttcgttttat caacagccta      4620
     cgacgagaga atgtcggcca aaagctgcag cgggaaattc taacccaaga agagctagcg      4680
     cgtgctgagg ttcttctgtg gaaaatggca caaatagaga ccttttcaga ggaacggaaa      4740
     gagttgatga aaacggctgg ttccccggat gccaaacatg gtaatgttgc taaatccagt      4800
     tccatataca aaacttggcc ttacatggac gcccaaggaa tcctgagaat gcgcggacgc      4860
     atcggagcag cagattacct accatttcaa gcaagatatc cggtaattct tcctaagctg      4920
     cacccgataa caaacatgat cgttgactgg tttcatcgcc gttatcgcca tgccaatcgc      4980
     gaaaccgtga tcaatgagct tcgtcaacac tttgaaatag caaatctgag atcgcttgtg      5040
     caaaaagtgt cgaaaaactg cacatggtgt cggattaaca aagcattacc gaatccgccg      5100
     gtaatggcgc cgctccccgg agaaaggcta gaaccgttcg tgcgaccttt tacgtacgtc      5160
     ggcgtggact actttgggcc tttgtatgtt aaggttggtc gatctcaagc gaaacgatgg      5220
     attgcgctat ttacttgcct ttcaatccga gctatccata tggaggttgt acctagtttg      5280
     tccacagagt cgtgcgtcat ggctatcagg agatttattg cacgccgtgg ttcaccagct      5340
     gtgtttttct cggacaacgg tacctgtttt caaggggcca gcaatcagct taaggaggaa      5400
     cttgaagcta tgaacaaagc ggtcgcggtc accttcacaa acgccgatac caaatggaag      5460
     tttatcccgc cagcctctcc gcatatgggt ggtgtgtggg aacgtttggt ccggtcggta      5520
     aaaacagcct taggctcagt cttcgaacat ccacgtaaac ctaacgacga aacgctggag      5580
     acaattattt acgacgcaga agcgctgata aattccagac ctctcacgta catcccgcta      5640
     gaatcagcag accaagaatc actgacgccg aatcatttcc tcttgggcag ttccacgggt      5700
     aataaaatag agccagctga catacccgaa cgagctacac tccgcagtag ttggaagatg      5760
     gctcaataca tagttggaga gttttggaga aggtgggtaa aagaatacct accagtaata      5820
     acacgccggt gtaagtggtt caaggaaacc aaggatatag ttgaaggaga tctggtcctt      5880
     gttgtaaacg gatctggacg aactcagtgg atcaggggac aagtagagaa aacctttgtc      5940
     ggttccgatg gaagagttcg tcaagcgcta gtgcgaacag ccaacggagt tttgcgccga      6000
     cctgctgtga ggctagcggt gttagacgtc gaagagaaac gtgaacctat aggacttcgg      6060
     aaggatcagg gacatgacct aggttcacgg gcgggggta                             6099
//
ID   BEL-789_AA-LTR repbase;    DNA;    INV; 516 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-789_AA-I;
KW   BEL-789_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-516
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-516
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 101-101 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 516 BP; 183 A; 102 C; 84 G; 147 T; 0 other;
     tgtgccgaca acacccctcg gtgcggcgac gctgctattg gtcttacctg atcaagccgt        60
     catacatgac agaagacagg agaaatgcca aacgatcgag caaatgatct ttgcaagtca       120
     tcacgttgat ctaccgttgt ggaaaatatc acctaaaaat tatacttaaa atctaattga       180
     gttatttctt aatcttataa atactagtac ggaattgctg ttgaatttga acttaaacct       240
     agtgactaga aattaaaaac tgttgtaagt agctcaatca aacacaatga acttaaaact       300
     aacatgcaaa ttgtacttat agcaaacata gaatctcggg tagctgatac gattcttcct       360
     aaacccacag aacgttcact aaaattgtga gtaaacattg tatttatcaa atgtttcaaa       420
     taaataataa aatgatattt gtagcttgaa gcttacacaa tccacatcaa ggtgtttgct       480
     atccggattt agtgagacga aatcccaccc cctaca                                 516
//
ID   BEL-78_AA-I repbase;    DNA;    INV; 6023 BP.
XX
AC   supercont1.278;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-78_AA_;
KW   BEL-78_AA-LTR; BEL-78_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6023
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.278; Positions  457149  451127.
XX
CC   Positions [5066-5623] - Integrase core
CC   'CTGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           418..5139
FT                 /product="BEL-78_AA-I_1p"
FT                 /translation="MEEELALKEKQLEDERQMREKKLEIEKRFIQRKMQQE
FT                 RELREKELAQEKALLEKQLADQVEFQNRQRELRERFQREKFEILSANLELE
FT                 GAVGGMLPGVDVAQDNQKMVEAWLDKEKPVHTANQKLDEAEAKSIAQERIA
FT                 KKQYALETPKRHPEILAVPPGAGNIKLPNFQPLDELDEEAASDDTSEDDGS
FT                 EDTPPVRVVMPTGPTKAQRAARQVLSKKLPIFTGKVEEWPLFYSSFVNSTT
FT                 ACGFSNIENLVRLQECLKGAALESVRSRLLLPQAVPQVIDTLQMLYGRPEQ
FT                 LIHSLLNKVRRAEAPRADRLETFIPFGLAVQELCDHLMAANFHDHLVNPVL
FT                 IQELVDKLPAATKREWVQFKRFVQPVTLTTFAQFTSKLVSEASEVILVIDP
FT                 KTKSEKVKGKDRGFVNAHSNAQERSFIKSKPVAPCQVCRKGEHRIRNCEKF
FT                 RQLNLGERVKVMEQLKLCERCLNEHEGWCKFKITCNVGDCRHHHHPLVHRE
FT                 QSNASAHQIRSHLNPASTSRFHCMHMSSTSSIIFRIAPVILFNGSKSIRTM
FT                 AYLDEGSELTLIDEDLVRVLKASGMSQPLKLRWTGNIVRDERNSECVSLEI
FT                 SGINCGKRFDLKDAHTVERLHLPKQCISFGEIGRQYRHLQGIELLDQTGDQ
FT                 PKLLIGLNNAYLLAPLDSRIGKADEPIGVKSHIGWTVYGPRRSSLPTGTFV
FT                 GYHAGLTNEELHSAMKKYFTAEDVEGTVSQLPESATDRRAREIMQNTTVKR
FT                 NGRYETGLLWKMDEFTFPDSLPMALHRLRGLERRLDKDPQLEKKVQQQIQE
FT                 YQTKNYIHEASVEELENADQAKVWYLPLNVVLNPKKPEKVRLVWDAAAQVR
FT                 GISLNSMLLPGPDLLVPLPAVLQPFRERAVAFGGDLKEMFHQFIIREADRQ
FT                 AQRFLFRTDRQREPQIFVMDVGTFGATCSPASAQFIKNLNASQYAGKYPDA
FT                 ARSIVRLHYVDDYLDSADSVNEAVKRAKEVRFIHSQAGFTIHKWISNSPTF
FT                 LEELGEHETEDKISLHLDEGTAERVLGLIWRPREDVFMFSTSVRDDLAPYL
FT                 LATARPTKRLALSCVMSLFDPLGLLAPFTLYGKILLQDLWKSGCDWDQEIN
FT                 DECFKKWTWWRNILSSIENIQIPRCYLKGVSADAYNTLQLHVFCDGSSQAY
FT                 GCVAYFRLETPGGIICSLVMAKTKVAPLKQLSIPRMELQAAVLGARLANTV
FT                 IANHRVKVTKRFLWSDSRTVLSWIQSDQRKYKPFVGFRIGEILQETAVDDW
FT                 RYIRTKMNIADLLTKKKRDSNLTTDGEWFHGQKILYAPEESWTGINRMAPS
FT                 TNEELRACHLYHASHTVEFAGPLVDVTRFSKWNILVRTMACVFRFISNCRE
FT                 KRRNKPIEVLKTNKRENNLECRSASTISILLKQEEYEMAEIALWKLAQSDG
FT                 FWEEKAILLRNQTTPMEKWSKIDKKSALYKLAPFLDEYQVLRVDGRLSQAE
FT                 FIPYDSRFPIILPSHHPVTNLLIDHLHRRFGHAFKDTVVNELTVLSSQSLF
FT                 LCFTGGRVVPTMQIEEESTAYTQDGSSSSRAAYTIRTTVQLCWDRLFRSSR
FT                 CSRWKAL"
FT   CDS           5036..6022
FT                 /product="BEL-78_AA-I_2p"
FT                 /translation="MAPLPVERLTPFVRPFSYVGIDYFGPVDVVVGRHCEK
FT                 RWIVLFTCLTVRAVHLEVAHKLDAVSCIMAIRRFVLRRGPPISIFSDNGTN
FT                 LKAANKELQEQINRIDTACANVFTNARTQWRFNPPSAPHMGGVWERMVRSV
FT                 KHVMSELHDGRRLNDETLLTVISEAEEIVNSRPLVYMPQDSLHAEALTPNS
FT                 FVRGITSCLENPAIPPTNQAEALRNAYKRSQVTADALWKRWIEEYLPALNN
FT                 RSKWLEESRPLAPGDLVFIVDGQHRNGWVRGQVESVFSGKDNRIRQALVRT
FT                 AHGVYRRPVTKLAVIEVASSGKSDPEPGSGQDLRARE"
XX
SQ   Sequence 6023 BP; 1755 A; 1350 C; 1470 G; 1448 T; 0 other;
     attactcaaa ataattaccc acgatatggc cggacaatgc aagaggtgca acgaaccgga        60
     taacgatgaa atggtagcgt gcgatacgtg ctcaacctgg tatcatttca cgtgtgtagg       120
     ggagtcaccc ggagttgcaa accgctcctt ctgctgtcac acatgcgcag agaaaaagaa       180
     gaaacccaag agaggccaaa agggcaaaac gacgaatcag ttgggcccac atgctagcat       240
     acccgagccg tcaattgatg cgtcatctaa taagagtgtc tcatctaaaa aaaccatagc       300
     tacagcgaac gaaaacgacc cagcgggaaa accgtcatct tgaggacacg acacagatca       360
     gtttcttctc acacgagccg tgggtcacat tcacgtgtgc agttagagtt tcgccgcatg       420
     gaggaggagt tagcactgaa agaaaaacag cttgaagatg agaggcaaat gagggaaaag       480
     aagctggaga tcgagaagcg attcattcaa aggaagatgc aacaagaacg ggaattgaga       540
     gagaaagaac tagctcaaga gaaggcgttg ttggaaaaac aactagcgga tcaagtggag       600
     tttcaaaatc gtcagcgtga gctacgagag cggttccaga gagaaaaatt cgagattcta       660
     tcggcaaatt tagaattgga gggtgctgtc gggggtatgc tacctggcgt ggatgtagcg       720
     caggacaacc agaaaatggt ggaagcctgg ctggataagg aaaaaccggt tcatacagca       780
     aaccaaaagc tcgatgaggc agaagcaaaa tcgattgctc aagagcgcat cgccaagaaa       840
     caatacgcac ttgagactcc aaagcgacac cccgaaatac tggccgtgcc acctggggca       900
     ggtaatatta aattaccaaa ttttcagcca cttgatgaac tcgacgaaga agctgcaagc       960
     gatgatactt cagaggatga tggttcggaa gatacgccac cggtcagagt ggtaatgcct      1020
     acaggaccta ccaaggcaca acgtgcagct cgtcaagtcc tctctaagaa gcttcccatc      1080
     ttcacaggaa aagtggaaga atggcctttg ttttatagca gtttcgtgaa ctcgacaact      1140
     gcgtgcggct tttcaaacat tgaaaacctt gtacgcttac aagaatgttt aaaaggcgct      1200
     gcattagagt ccgttcggag ccggcttctc ttaccacaag ccgttccaca ggtaatcgat      1260
     acgctccaaa tgttatacgg acgccccgag cagttgatcc atagtctctt gaataaggta      1320
     aggagagctg aggcgcccag agccgaccgc ttggaaacat ttattccgtt tggactcgca      1380
     gttcaagagc tgtgtgacca tctaatggca gcaaactttc atgatcacct tgtgaatcct      1440
     gtactcatcc aagagctggt ggacaaactt cctgcggcta cgaagagaga atgggtacag      1500
     ttcaaacgat tcgttcaacc ggtgactctt actacgtttg cacaattcac atcgaagctg      1560
     gtttctgaag ccagtgaagt cattcttgtc atcgatccta aaacgaagag tgaaaaggtg      1620
     aaaggcaagg atcgaggatt tgtgaatgca cactcaaatg ctcaagaacg atccttcatc      1680
     aaatcgaaac cagttgcacc ttgtcaagta tgccgaaaag gagaacatcg catccgcaat      1740
     tgcgaaaaat ttcggcagct gaacctcggc gaacgtgtga aagtcatgga acagttgaag      1800
     ttatgtgaac ggtgtttaaa cgaacatgaa ggatggtgca aattcaaaat tacctgcaat      1860
     gtaggtgact gccgccacca ccaccacccc ctggtacatc gtgagcaatc aaacgcttca      1920
     gcgcatcaaa tacgttcaca tttgaatcct gcatcaacta gcagatttca ctgcatgcat      1980
     atgagctcca catcgtcaat tatcttccga atcgctcctg tcattttgtt caatggtagc      2040
     aaatccatcc gtacgatggc atatttggat gagggttccg aactaacttt aatcgatgag      2100
     gatcttgtgc gtgttttgaa agccagtggt atgtcgcaac cgttaaaact gcgatggact      2160
     ggaaacattg ttcgtgatga gcgcaattca gaatgcgttt cgttggagat ttccggaata      2220
     aattgcggta aaagattcga cttgaaggat gcacataccg tcgagagact gcatcttcct      2280
     aaacagtgta tcagctttgg tgagattggt cgtcaatatc ggcatttaca aggcattgaa      2340
     ctactagacc aaacaggtga tcaacctaaa ctcttaattg gactcaacaa tgcctatcta      2400
     ctagctcctt tggactctcg cattggtaaa gcagacgagc ctattggagt gaaatctcac      2460
     atcggatgga ctgtctacgg tcctagacgt tcgtctcttc ccacgggaac tttcgttgga      2520
     tatcatgctg gtctgacaaa cgaggaacta cacagtgcta tgaagaaata tttcaccgcc      2580
     gaggacgttg aagggacagt gagtcagctt cctgagtctg cgacagatcg tagagctcga      2640
     gaaattatgc aaaatacgac agtaaaacgg aatggtcgct acgagaccgg ccttttatgg      2700
     aaaatggatg aattcacttt tcctgacagc ctgccaatgg cgttacatcg actacgtgga      2760
     ttagaacgtc gcctggacaa ggacccacag ctagaaaaaa aggtccaaca gcaaatccag      2820
     gaataccaaa ccaaaaacta tatccatgaa gcgtcagtgg aagagcttga aaatgccgat      2880
     caagccaagg tttggtatct tccccttaat gtggttctaa atcctaagaa acctgaaaag      2940
     gtgcgattgg tttgggacgc tgcggcacag gtacgaggaa tatcactcaa ctcgatgctg      3000
     ttacccggtc cagatttatt ggtgcccttg ccggcggtgt tgcaaccatt tagggagcgt      3060
     gcagtagcct ttggaggaga tcttaaagag atgttccacc agttcatcat acgtgaggcc      3120
     gacaggcaag cgcagcggtt tctctttcgc acggatcgtc aaagggaacc acagattttc      3180
     gtgatggatg ttggaacttt cggcgccact tgctccccgg catcggcgca gtttattaaa      3240
     aatcttaatg cttcacagta tgccgggaaa tatccagatg cggcgcgctc catagttcgc      3300
     ttgcactatg tcgatgatta cctcgacagt gcggatagcg tcaacgaggc agtaaaacga      3360
     gccaaagagg ttcgcttcat ccactctcaa gctggattca ccattcataa atggatatca      3420
     aattcaccaa catttctcga agaactgggt gaacacgaaa cggaggacaa aatttccctc      3480
     caccttgatg aaggcactgc agaacgagta ttgggtctta tttggcgacc tagagaagac      3540
     gtatttatgt tttctacatc tgtacgagat gatctggctc catacttgct agcaaccgct      3600
     cgcccaacta aaagattggc tctcagctgc gttatgagcc tctttgatcc tttaggctta      3660
     cttgcgcctt tcactctgta tggcaaaata ctactacaag acttgtggaa aagcggttgt      3720
     gattgggatc aagagattaa cgacgagtgc ttcaaaaaat ggacttggtg gagaaatatc      3780
     ctttcttcta tcgaaaatat acaaattcct cgatgctatc ttaaaggagt ttcagctgac      3840
     gcctataaca ccttgcaact ccatgtgttt tgtgacggaa gctctcaagc atatggatgc      3900
     gtagcttact tccgtttgga aacccctggc ggcataattt gtagcttggt gatggccaaa      3960
     actaaggtcg cccccttgaa gcagctttct attccccgaa tggagctaca agcggcggtc      4020
     ctaggagctc gactggccaa cacggtaatc gccaatcaca gagtaaaagt tacaaaacgc      4080
     tttctttggt ctgattcgcg gactgttcta tcttggatcc aatccgatca gagaaaatac      4140
     aaaccttttg ttggatttcg gatcggggaa attcttcaag agacagcagt ggacgattgg      4200
     cgttacataa gaacaaaaat gaatatcgca gatctgctaa ccaaaaagaa gcgggatagc      4260
     aacttaacca cagatgggga gtggtttcat ggacaaaaaa ttctatatgc accagaagaa      4320
     agctggaccg gaatcaaccg aatggcccca agtacgaacg aggagttgcg agcttgtcat      4380
     ctttatcatg ctagccatac agtggagttc gcaggaccac ttgtcgatgt tacacgcttt      4440
     tcgaagtgga atatattggt gcgcactatg gcgtgcgtgt ttcggttcat ctctaactgt      4500
     cgtgagaagc gacgcaacaa accaatagaa gtcctgaaga ctaacaagag ggagaacaat      4560
     cttgagtgca ggtcagcgag tacaatatcg attcttctga aacaggaaga atatgaaatg      4620
     gctgagatcg ccctatggaa gctagcccaa agtgatggtt tctgggaaga aaaagctatt      4680
     ctgctgcgaa atcagacaac accaatggag aagtggtcga agattgacaa gaaaagcgcg      4740
     ctctataaac ttgcgccttt cctggacgaa taccaggttc tacgcgttga tggacgcttg      4800
     agtcaggctg aattcattcc atacgactcc cgttttccaa taattttacc aagccatcat      4860
     ccagtcacca atctccttat tgatcatctt catcgacgct ttgggcatgc tttcaaggat      4920
     acagttgtga acgaattgac ggttctatct tcccaaagtt tgttcttgtg tttcacgggt      4980
     ggtcgagtgg tgccgactat gcaaattgaa gaagagtcga ccgcttacac ccaggatggc      5040
     tcctcttcca gtcgagcggc ttacaccatt cgtacgaccg ttcagttatg ttgggatcga      5100
     ttatttcggt ccagtagatg tagtcgttgg aaggcactgt gaaaaaagat ggatagtact      5160
     ttttacctgt ctgacagtac gtgctgtcca tctagaagtg gcgcataaat tagacgcagt      5220
     gtcttgtata atggctatac ggagatttgt cctgagacga ggtcctccga tctcaatatt      5280
     ttcggacaac gggacaaacc tgaaggcagc aaataaagag ctacaggagc agatcaatcg      5340
     cattgatacg gcgtgtgcca acgttttcac aaatgcccgg acgcaatgga gatttaatcc      5400
     accctctgcg ccccacatgg ggggcgtttg ggagcgcatg gtgcgctccg tgaaacatgt      5460
     gatgtcggag ttacacgatg gtaggaggtt gaacgacgaa actttgctga cagtgatatc      5520
     cgaggccgaa gaaatcgtca attctagacc gcttgtgtac atgccacaag attcgttaca      5580
     tgctgaggcg ttgaccccaa atagtttcgt tagaggtatt acgtcgtgct tggagaaccc      5640
     agcaatccct cctacaaacc aagctgaagc tcttcgcaat gcctacaagc gttcacaggt      5700
     tactgccgat gccttatgga aaaggtggat agaagaatat ctacctgcgc ttaataaccg      5760
     aagcaaatgg ttggaggaaa gcagaccatt ggctccggga gacttagttt tcatcgtaga      5820
     cggacaacac cgcaacggat gggtacgagg ccaagtggag tcagtattct ctggcaagga      5880
     caatcgcatt cgacaggcat tagttcgcac cgctcatgga gtgtatcgtc gccccgtaac      5940
     caaattagca gtgattgaag tagcatcttc tggtaaatct gatcctgaac caggttctgg      6000
     acaggattta cgggccaggg aat                                              6023
//
ID   BEL-78_AA-LTR repbase;    DNA;    INV; 427 BP.
XX
AC   supercont1.278;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-78_AA_;
KW   BEL-78_AA-I; BEL-78_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-427
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.278; Positions  451126  450700.
XX
SQ   Sequence 427 BP; 138 A; 84 C; 80 G; 125 T; 0 other;
     tgttacaaac accagcaaag gacggcgtac ctactttttg agcgacgttg cggtcactga        60
     cggcgacgaa caatatccat tgtatacaaa agaatcaatc cgtaatagag atcgcatggt       120
     gataaacgta gattaatgtg ctatgcaagt gaattatata tgaatttgat agttaataac       180
     agcattatat tcataaacta gtgtgattat attgatcgac gtaaatttag gttagcttct       240
     ataaacaagt ttgtaatccc caaatactca cgaataccgc tgtaatacgt agtacttgcc       300
     gatttctgag atccaacttc agttgcccat cgagcttgcc aaatccaggg attggaaact       360
     aattattttg agctgattcc ataaaacgcg ctgcttcaaa acttagtatc cgctctgtgt       420
     ccgaaca                                                                 427
//
ID   BEL-78_CQ-I repbase;    DNA;    INV; 3014 BP.
XX
AC   AAWU01022194;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-78_CQ_;
KW   BEL-78_CQ-LTR; BEL-78_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3014
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 297-297 (2011).
XX
DR   GenBank; AAWU01022194; Positions   14368   17381.
XX
CC   'ACCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           465..2981
FT                 /product="BEL-78_CQ-I_1p"
FT                 /translation="MWRSFLGFVVPGENVELKTESESDPEDRKPVVEQLLL
FT                 TPKQRYAEKKRKMADEEVKALLNRRGHVKGKLTRIKTALAQPVISAAQFEV
FT                 YKANIEKYYGEYDDLNNKILDSKLTEEQASENDARYLEYEHLYDEVLVKLR
FT                 ELTAPLERNQTVVRAGQAGQQIIVQQQPLSVPLPTFDGQYENWPKFKAIFT
FT                 DLMQKSLDSDAIKLYHLEKSLVDAASGSIDAQTIKDNNYQLAWQTLEERYE
FT                 NQRLIIDLHISGILQLKQMTKKSSKELRNLIEECARHVENLRFHKQELLGV
FT                 SELVVIHILSSALDGETRELWEASIQRKQLPKYQETMDFLKKRCDILERCE
FT                 SAASATSAVQLVLPETSSKPTTRIASAAMTSNDVECELCGGSHANFRCGSF
FT                 RGMSVAERWAKIRDERMCFNCLRKGHRVESCPSERTCKCGQKHNSLLHYER
FT                 TQQTPRNNPGETPALSVPVEALPQVPTPRGEAWTSGTGPVVSDADDEQQTT
FT                 SCFSSGAQKSSRRVLLQTAVINVVDASGRFHPCRTLLDSGSQAHILSEAMA
FT                 QKLGLPFEKCNVTVIGANAAKTQVKKGVTLSFASRYVNFSDKISCLVTEKP
FT                 TGRIPSEKIDISAWRVPRGLQLADPHFNEPHEIDLVMGSDYVWELLRSEEY
FT                 KLANGTVTLRETDLGWIVTGSYDSSPQLSCQVVHVLNAATQRTERVPFHGA
FT                 RRLVQQAESVKDRFSTATKIAKKEPSGTSSKEEAVDQLGEKTFLHEEDPVK
FT                 KCCFNSKQVLKCKEEKVIEPKRSALRDNDAGLPRVGGRPVSFPHGVAYAGA
FT                 VTANRNPPRKERAGARRPVGNPANRKQRPASGGLRFF"
XX
SQ   Sequence 3014 BP; 771 A; 758 C; 909 G; 576 T; 0 other;
     tttggtcctt tcgacccgaa tagaccggcg gaagtcggaa cgtcgcgagt gtcttgtgga        60
     gtgaagtgca cggcaagaaa agaagaccgt gaactgatcc ggaagacgtc attcccggag       120
     ggcgtttcac gtggccttga acagcgtgaa gctacgcgcg tgtgggagaa ccagcgacgc       180
     ggagtgctcc ggatgtggtc ccattggccg ccggaagcag aaagtgagcc gtaagtggtc       240
     ccattggcca ccggcagtga aaagtgaacc ggagtggtcc cattggccac cggtagtgaa       300
     aagtggtccc attggccacg gcagaagaag tgcgcgcaaa aggtggtccc attggccatc       360
     cgagcagcag agaaaagtgc gtttgtgtgt gtgtgcgaca acaagaagcg tgcgtcgcca       420
     tcttggcaca tgaataggag aaaaaagtga agtgaaatcg gcggatgtgg cgtagttttt       480
     tgggattcgt ggtcccggga gaaaacgtcg agctgaaaac cgaatcggaa tccgatccag       540
     aagatcgcaa gcccgtggtc gaacaacttc tgctcactcc gaagcaacgg tacgcggaga       600
     aaaagcggaa aatggcagac gaagaggtta aagcgttgct gaaccggcga gggcacgtta       660
     agggcaagct aacccggatc aagactgccc tagcccagcc agtgatatcg gcagcgcagt       720
     tcgaggtcta caaggctaac atcgagaagt actacggtga gtacgatgac ctgaacaata       780
     agattttgga ttccaaactg acggaggaac aggcgagcga gaatgatgct cggtatttgg       840
     agtacgagca tttgtacgac gaggtgttgg taaagctcag ggagctcacg gcaccactgg       900
     aacgcaacca gacggttgtc cgcgctggac aagccggcca gcagatcatc gttcaacagc       960
     aaccactgag tgtacccctg ccgacgtttg acgggcagta cgagaactgg cccaagttta      1020
     aagcgatttt caccgatctg atgcagaaat cgttagactc ggacgccata aagctgtacc      1080
     acctggagaa gtcgctcgtt gatgcggctt cagggagcat cgatgcccaa acgataaagg      1140
     acaacaacta ccagcttgcg tggcagactc ttgaggagcg ctacgaaaat caacggctga      1200
     tcatagacct ccacatcagc ggaattctgc agctgaagca gatgacgaag aagtcgtcga      1260
     aagaactgcg gaaccttatt gaggagtgcg ccagacacgt tgagaacttg cggttccaca      1320
     agcaggaact acttggtgtc tcggagctgg tcgtgatcca cattctgtcc tctgccctgg      1380
     acggagaaac gcgagagttg tgggaggctt ccattcagcg aaagcagctc cctaagtatc      1440
     aggagaccat ggacttcctg aagaagcggt gcgacatact ggaacggtgt gagtctgccg      1500
     cttccgcaac gtctgctgtc cagctggttc ttccagagac gtcatcgaaa ccaacgacga      1560
     ggatcgcctc ggcagccatg acttccaacg acgtggaatg tgagctgtgt ggtggatcgc      1620
     acgccaactt tagatgtggc tcgttccgtg gcatgagtgt cgcggagaga tgggccaaga      1680
     tccgtgacga gcggatgtgc ttcaactgcc tacgcaaggg tcatcgagtg gaaagctgtc      1740
     catcagagcg tacctgcaag tgcggccaga agcacaacag tttgctgcat tatgagcgga      1800
     ctcagcagac cccacggaat aatcccggag aaaccccagc tctctccgtg ccggtcgagg      1860
     ctcttccaca agtaccgacc ccccgtggtg aggcttggac aagtggaaca ggtcctgttg      1920
     tctctgacgc cgacgacgag caacagacaa cgtcttgttt cagcagcgga gcacagaagt      1980
     cgtcccggag agtacttctg cagactgctg ttatcaacgt tgtggacgca tccggtagat      2040
     tccatccgtg tcgcacgttg ctggattccg gctcacaagc gcacattctg tcggaggcga      2100
     tggcgcagaa actcggccta cccttcgaga agtgcaacgt tacggtcatc ggagctaacg      2160
     ctgcaaagac gcaagtgaaa aagggtgtta ccttgagttt tgcgtccagg tacgttaact      2220
     tcagcgacaa aatttcgtgt cttgtcaccg agaaaccgac gggacggatc ccgtctgaga      2280
     agatcgacat ctctgcctgg cgcgtcccac ggggattgca gctggcagat ccacacttca      2340
     acgagccgca cgagatcgat ctggtgatgg gatcagatta cgtgtgggaa ttgttgcgat      2400
     cagaagagta caagcttgca aacggcacgg tgacattgcg agagaccgat ctgggctgga      2460
     tcgtgaccgg ttcgtacgac tcatctccgc agttgagttg ccaagtcgtc cacgtgctga      2520
     acgccgctac gcaaagaacg gaacgtgtcc cgttccatgg agcgcgacgt ctggtgcagc      2580
     aagcagagtc ggtgaaagac cggttctcaa ctgccaccaa gatcgcgaag aaggaaccgt      2640
     ccggaaccag ctccaaggaa gaagcagtgg atcaactggg agagaagacg ttcctgcatg      2700
     aagaagatcc agtaaaaaag tgctgcttca attcgaagca agtgttgaag tgcaaggaag      2760
     agaaagtgat tgaacccaaa agaagtgccc tgagagacaa cgacgccggc ctgccgagag      2820
     tcggtggacg tccggtgagc tttccgcacg gcgtggctta cgctggtgct gtgacggcga      2880
     accgcaaccc acccaggaag gagcgcgctg gtgcgcgtag gcctgttggc aaccctgcca      2940
     accgaaaaca gcgacctgct tcaggaggac ttcggttttt ctgagttgcc ggagtttgca      3000
     gccgcggggg agaa                                                        3014
//
ID   BEL-78_CQ-LTR repbase;    DNA;    INV; 369 BP.
XX
AC   AAWU01022194;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-78_CQ_;
KW   BEL-78_CQ-I; BEL-78_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-369
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 298-298 (2011).
XX
DR   GenBank; AAWU01022194; Positions   13999   14367.
XX
SQ   Sequence 369 BP; 114 A; 72 C; 100 G; 83 T; 0 other;
     tgtcggcgat ggacatctgc ctccgaaaaa tatttgacgc aaaagtaaaa atcgaacgaa        60
     tcggccgcac gggttgctgc gatcaaacgc tgcctgcttt gacagctagc aacggtcgtt       120
     gcggtgcggt ttggcgcgca acgaagcgtg cgcaaaaagg gaaggagaga gagagaaagg       180
     gaaaattttc actcccgttt gagacgtgat cgagtaaagt caagttttgg tgtaaatacg       240
     atcggaataa agttttttga agtagagaag agattttcca agtgttttga tcacacgccg       300
     aataaaactg gtaagaacat cccatacagt ccacctgcag aatcgaagtt ggggaatttg       360
     gcctcaaca                                                               369
//
ID   BEL-790_AA-I repbase;    DNA;    INV; 5400 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-790_;
KW   BEL-790_AA-I; BEL-790_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5400
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5400
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 254-254 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..5367
FT                 /product="BEL-790_AA-I_1p"
FT                 /translation="MPVNTRRSSKIPIIPTVRQQKVAKADAERRKKMAEEL
FT                 KALQRRCEFISAKVARIKTNLIKADDEQTPVNEYVLDTFLRTIDAAYIDMN
FT                 DCQAKIFAVTPNKQEDEEEKYLLFEELYTEVRAEVCRQVDGHRKRAEFHID
FT                 SGRQLVPSAQQIRVQQSVLPHTPLPTFDGNSEHWFKFKSMFLDIMKKCPTE
FT                 DAATKLYHLDKCLVGDAAGAINQQFINENNFDGAWNFLQQRYEDKRKIVDI
FT                 HATRLLQLKPMTQESGKQLRELIEECVRHVDSLRYHGYDVLGLSDILLVNM
FT                 IASRLDFETKKTWEATNKHGVIPTYADTISFLEKHTQVLERVEASQQKIKQ
FT                 KSSASAPMHPQKSHAKSTTLTVTSETKCVFCEKAHFNHQCEELLKLSATDR
FT                 NAKAKQAGVCYNCLRKGHMTAKCTSKHSCRDCNKRHHTVLHIDVPKPSDDT
FT                 SKPSDVQSPETGNASTNTSNVVTLNCAENTIEQKTVLLSTAVVNILDVHGQ
FT                 IKLCRVLLDSGSQLHLITEAMANLLGITRTRCSTSVVGVNGKQTPIKHKLS
FT                 VQFGSRINEYSQHIECLIVPRIASIIPASKLNVSDWIIPEEAVLADPDFNK
FT                 PQRIDLLIGAELFYRTLKSGQIQLGDRLPVLQETTLGWVVSGPVSRHSSYR
FT                 QREDCNATLSDSDHQELEQLIQRFWELEEVPTASKLSSEEELCEQHYQQTT
FT                 TRDSTGRYVVRLPFRDNADQLGESRQQAVKRFEHLERRLSNNTELKQQYDS
FT                 FMVEYIELHHCEETPEHEVISTPNFYLPHHAVLKPSSSSTKLRTVFDASAK
FT                 SSSGVSLNDLLMIGPVVQESLLNIMMRFRIHRYVFSSDISKMYRQIRIHDD
FT                 DTKFQRIVWRKNTTDSLKTYDLTTVTYGTASAPFAATRTLNQLAADEGSNF
FT                 PLAAAVVIQDFYVDDVLSGGDTVNEIQTTAEQLTQLLKCGGFQLHKWCSNS
FT                 AEFLETIPEELREKQAPMEISGVNDIIKTLGLLWNPSSDELAFRINPIQQQ
FT                 TSITKRHILSEVSKIYDPLGLFAPATVVTKLLMRELWKLKIGWDEEVPEEQ
FT                 RDKWITFVTSLMNTAGMTINRHVLANNRIALELHAFSDASLAAYGTCVYVR
FT                 SVLPNGSAEVHLLTSKSKVAPNQTIPRLELCAFLLMCRLVKAVTSALHLEF
FT                 ESIVLWTDSQIVICWLKKSPHELTTFVANRVAEAQRCTNGYQYRYVRSALN
FT                 PADIVSRGILPEELKHNDVWWHGPSFLRSAAYPEFESADEIELPDVKAVTL
FT                 VVNNRPDEFPVLYRYSSFRKLRRVMAYVARFIRKCRKTRTAYDDEPFPTVE
FT                 EYQASLYMIVSFVQRQHYAKDIKQIQHYQTTQNVNDKYVGDLRFLNPLYEA
FT                 GILRVGGRIKHADLAFERRHPIILPPKHHVTKIIINDFHETYLHIGPSGLL
FT                 SALRQRFWIVDGRNVIQKQLRKCVRCFRITPPDVKRYMGDLPKFRVTQSDV
FT                 FSRVGVDYGGPFLIKTGNPRKPVYVKTYIALFICMTTKAIHIELAADLSTE
FT                 AFINILKRFVARRGVPTQIHSDNATNFVGANSTLHELYVLFNQQDTKLALS
FT                 NYCLPQEIKWYFIPARSPEFGGIWEAGIKSAKHHIKRVVGDAKYTYDEWNT
FT                 LIAQIEAILNSRPLVPQSSDPSDLKAITPGHILIGRELTAILEPSLDDVKL
FT                 NTLSRYQLIQRMRNEFWKRWSLDYLQELQRRPKHNRKHTEVKIGDLVVLKE
FT                 ENVPPQQWRLGRVVGANPGSDGITRAVTVKTHSGVFSRTTAKLAVLPLDD"
XX
SQ   Sequence 5400 BP; 1559 A; 1261 C; 1275 G; 1305 T; 0 other;
     ttattggtcc gttcgatcgc ggatatggaa taatcggtcg ttttcgcgaa ttattcgatg        60
     ccggtcaaca ctcgtcgcag ctcgaaaatt ccgataattc ctacagtccg gcagcaaaaa       120
     gtggcgaagg ccgacgccga acgacggaag aaaatggcgg aagaattgaa ggcgctccaa       180
     cgacgatgcg aattcatttc ggcgaaggtt gcacgcatca aaactaacct cataaaagcg       240
     gacgatgaac agactccagt caacgagtac gttctcgata ctttcctacg tacgattgat       300
     gctgcataca tcgacatgaa cgattgtcag gcgaagattt ttgctgtcac accgaacaaa       360
     caggaggatg aggaggaaaa gtatttgctg ttcgaagagc tgtatacgga agtgcgggcg       420
     gaagtatgca ggcaagtaga cggacacagg aaacgagcgg aatttcacat agattctggt       480
     cgccagctgg taccaagtgc gcaacagata cgagttcaac agtccgtttt accgcatacg       540
     ccgctaccaa cgttcgacgg caactcagag cattggttca agtttaaatc gatgtttctg       600
     gacattatga agaagtgccc aaccgaggat gctgctacaa agctatacca cttggataag       660
     tgtcttgtcg gggatgcagc cggcgcgatt aaccagcagt tcatcaacga aaacaatttt       720
     gacggtgctt ggaattttct acagcaacga tacgaggaca aacggaaaat cgtggacatt       780
     catgctactc ggttgctcca gctgaagccg atgactcagg aaagtggtaa gcagttgagg       840
     gaactaatcg aagaatgcgt gaggcatgtc gattcgctca gataccacgg gtacgacgta       900
     ctaggcctct cagacattct gttggtcaac atgattgcct ctcggctcga tttcgaaacg       960
     aaaaagacgt gggaagctac taacaaacac ggtgtgattc ccacatacgc cgatacgatt      1020
     tccttcttgg aaaagcacac tcaagttctc gagagagtag aggccagtca gcaaaagatt      1080
     aagcagaaat ccagtgcgag tgctccaatg cacccacaaa agtcacatgc gaagtccact      1140
     actttgacag tgactagcga gacgaaatgc gttttctgtg agaaggcaca ttttaaccac      1200
     caatgtgaag agctgcttaa actttctgct accgacagga acgccaaagc aaagcaagct      1260
     ggcgtatgct acaattgttt gagaaaaggg cacatgactg caaaatgtac gtcgaagcac      1320
     tcttgccgag actgcaacaa acgacatcac acggttctac acattgacgt cccgaagcca      1380
     agtgatgata ctagcaaacc aagcgatgtt cagtctcctg aaaccggcaa tgcttcgaca      1440
     aatacgagca acgtggtaac cctcaattgc gccgaaaata caatcgaaca gaaaacagtg      1500
     ctactatcga cagctgtggt aaacatactt gatgtacatg gccagatcaa actgtgccgt      1560
     gttttactag actctggatc gcagctgcat ctaattacgg aagcaatggc caatctcctt      1620
     ggaatcaccc gaacccgatg ctctactagt gtagttggtg tcaacggaaa acagacgcca      1680
     atcaagcaca agttatctgt tcaatttggc tcacgtatca acgagtactc tcaacacatc      1740
     gaatgtctca tcgtacctag gattgccagc attattccag caagcaaact caacgtgtct      1800
     gattggatta ttccggagga agccgttctg gcagatccag atttcaataa gccccaacgt      1860
     atcgaccttc tcatcggcgc agaattgttt taccgcaccc tgaagagtgg acaaattcaa      1920
     cttggcgaca gattacctgt cctacaagag accacactag ggtgggtcgt atctggtcca      1980
     gtgtcgcgac attcgtcgta tcgtcaacgt gaagactgca atgcaactct ctccgattct      2040
     gatcatcaag aactcgagca gttgatccaa cgtttttggg aattggaaga ggttccaacg      2100
     gcttcgaagc tatcgagcga agaggaattg tgtgaacaac attatcagca gacaacaacg      2160
     agagattcga ccggtcgcta cgtggtcagg ctgcctttcc gcgacaatgc tgaccaactt      2220
     ggtgagtcac gtcagcaagc agtcaagagg ttcgagcatt tggaaaggcg tttgagtaac      2280
     aacacggagc tgaaacagca atacgattcc ttcatggtgg aatacataga gcttcatcac      2340
     tgtgaagaga ctccagaaca cgaggttatc agtactccaa acttttatct acctcaccat      2400
     gccgttttaa aaccgtcttc atcgtccacc aaacttcgaa cggtttttga tgcatccgca      2460
     aagtcatctt ctggtgtgtc gcttaatgat cttctcatga tcggaccggt cgtgcaagaa      2520
     tcattactga atattatgat gcggttccga atccatcgat acgtcttctc gagcgacatc      2580
     tctaaaatgt atcgccaaat caggatccac gacgacgata caaagttcca gaggattgtt      2640
     tggcgaaaga atactacaga ttccctcaaa acgtacgatt tgacaacagt gacgtatggc      2700
     accgcgtcag caccgttcgc agccacacgt actttgaatc aattagctgc tgacgaaggc      2760
     tcaaattttc cactagctgc tgcggttgtt attcaagatt tctatgtgga cgatgttttg      2820
     tcgggaggtg acactgtgaa cgagattcaa actacggctg aacaactgac acaattgctg      2880
     aagtgtggag gatttcaact acacaaatgg tgctctaatt cagcagagtt tctagaaaca      2940
     attccggaag agctacgaga aaagcaagcc ccaatggaaa ttagtggagt caatgacatc      3000
     atcaaaacgc ttggcctgct ttggaacccg tcgtcggacg aactggcatt caggatcaat      3060
     ccgattcaac aacaaacctc tatcaccaaa cgacatattc tgtccgaggt ttcgaaaata      3120
     tacgatcctc ttgggttgtt tgcacccgcc acggtggtta ctaagcttct catgcgtgaa      3180
     ctgtggaaac ttaaaatcgg ctgggacgaa gaagtgccag aagagcagcg ggataaatgg      3240
     atcaccttcg ttacgagtct aatgaataca gctggaatga caatcaatcg acacgtccta      3300
     gcaaacaatc gaattgcctt ggaattacac gccttctcgg atgcttcctt ggcagcctac      3360
     ggtacatgtg tatacgtgcg ttctgttctt ccaaatggtt ccgctgaagt gcatcttctg      3420
     acaagtaaat ctaaagtggc tccaaatcag acaatacctc gcctggagct atgtgcgttt      3480
     ctgctaatgt gccggctagt aaaagctgtt acttcggcgc ttcatttgga attcgaaagt      3540
     atcgttcttt ggacggattc ccaaattgtt atttgctggc tgaagaaatc gccccacgag      3600
     ctcaccacgt tcgtcgccaa tcgtgtagcc gaggcacaaa ggtgtaccaa tggttaccag      3660
     tacaggtacg tccgatcagc actgaatcca gcggatatag tgtccagggg tatcctccca      3720
     gaggagctga agcataacga tgtttggtgg cacggcccgt cgttcttgcg atccgctgct      3780
     tacccggaat ttgagtctgc agatgaaatt gaattaccag atgttaaagc agttacactt      3840
     gtagtcaaca atcgaccaga tgagtttcct gttctctacc gatacagctc ttttcgcaaa      3900
     ctgcggagag tgatggctta cgtagcacga ttcattcgga aatgcaggaa gacacgaaca      3960
     gcatatgatg atgaaccgtt ccctacggtt gaagaatatc aagcaagcct ttacatgatc      4020
     gtcagctttg tgcaacggca acattacgca aaggacatca agcaaataca gcactaccaa      4080
     acaacgcaga atgtgaacga taaatatgtt ggtgatttac gtttcctgaa cccgttatat      4140
     gaagctggaa tactacgtgt aggtgggaga atcaaacatg cggacctagc gtttgaacga      4200
     cggcatccga taatacttcc tccgaagcat catgtaacaa agatcattat caacgatttc      4260
     catgaaacgt acctgcacat cggacccagt ggtttgttgt cggcacttcg acagcggttc      4320
     tggatagtgg acggccgaaa tgtgattcag aaacaacttc ggaagtgtgt tcggtgtttt      4380
     aggatcactc caccggacgt caagcgctac atgggtgacc tgccaaagtt tcgtgtgaca      4440
     caatctgatg tcttttcgag agttggtgtt gactacggtg ggccatttct catcaaaaca      4500
     ggtaaccctc ggaaaccagt gtatgtgaaa acgtacatcg cactatttat ttgcatgacg      4560
     acgaaagcta ttcatattga gttggcggca gatttatcga ccgaagcttt tatcaacata      4620
     ctgaagcgtt tcgtggctcg tcgtggagtt cccacacaaa tacattccga taacgccaca      4680
     aattttgtcg gcgcgaattc aacattacac gagctgtacg ttcttttcaa tcagcaggat      4740
     acaaaactag ctctcagtaa ctactgccta cctcaggaga tcaagtggta cttcatcccg      4800
     gcgcggtctc cagaatttgg tggtatatgg gaggctggta taaaatcggc caagcatcac      4860
     atcaaacgag tcgttggcga tgcgaagtat acttacgatg agtggaatac cttgattgca      4920
     cagatcgaag ctattcttaa ttcaaggccg ctcgttcctc aatcttctga cccaagcgac      4980
     ctgaaggcca tcacacctgg acacattctc attggccgag aattaactgc aatactggaa      5040
     ccttcccttg atgacgtgaa gttgaatacg ctctctcgtt accaactcat ccaaagaatg      5100
     cgaaacgaat tttggaagag atggtcatta gattatttgc aagaactaca gcgtagacca      5160
     aagcacaatc gcaaacatac tgaagtgaaa atcggagatt tagtcgtttt gaaggaggag      5220
     aacgtgccac cccaacaatg gcgtttaggc agagtggttg gagccaaccc gggttccgat      5280
     ggaataacta gggcggtgac ggtaaagacg cacagcggtg ttttcagcag gacgacggcg      5340
     aagttggcgg ttttacctct cgatgattga gttccgagga aactgcaacg cgggggagga      5400
//
ID   BEL-790_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-790_AA-I;
KW   BEL-790_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-225
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 102-102 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 225 BP; 63 A; 50 C; 33 G; 79 T; 0 other;
     tgttcagact aactgccatt tcaaaaagta gcatactttc ttttattttt gcctatttct        60
     acattgaagt gtatttttga gttttcttcg caaccttgac tgtatctctc tggtaatcga       120
     aagttcgccg cgctatgaac acgcaactcg cgacgctaat aaaaaactgt taattttcgt       180
     taataaatac agtccatttc tcgaattcca gtccgaaacc gtaca                       225
//
ID   BEL-791B_AA-LTR repbase;    DNA;    INV; 372 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-791B_AA-I;
KW   BEL-791B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-372
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-372
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 173-173 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 372 BP; 120 A; 72 C; 80 G; 100 T; 0 other;
     tgacagttct caaaactgga agctgcttaa agcaggtatg ccatgctgtc agagagactg        60
     acagcagcct gaaatattta aatttatggt agagtttatg gtatattcaa aatggaatta       120
     tttcacacaa cgtagggtta aaagtagatg taagacaata aattttagtc agttgaaatc       180
     gaacattcga gaaataaact tatcctttca aaacgcaaat aaagtgagtt gaagtgccag       240
     aaaagttaaa agttgtttga gtggtgattc ttttggtgcc cagttccgtc gatagtgacc       300
     acccccggta gtgtccaact ctgtccgtgt gtgagcccaa tcccagccgg aaaccacgat       360
     cctgccccaa ca                                                           372
//
ID   BEL-791_AA-I repbase;    DNA;    INV; 5916 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-791_;
KW   BEL-791_AA-I; BEL-791_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5916
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5916
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 264-264 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           552..5801
FT                 /product="BEL-791_AA-I_1p"
FT                 /translation="MAEERSRQQLINRRTTLIAALGRAEQFVEKYVAERDR
FT                 GQVKLRLENLDTVWMGLEEVQTQLEDMELTNQGMAQNLTFRSHNETRYFQI
FT                 KAALQSFLPNVPPTTNAIPQSSTSGLSGIKLPTISLPEFDGDYNQWLPFHD
FT                 TFVALIHSNPEVHDIQKFHYLRAALKGEAAQLIESIGISSVNYAIAWQTLV
FT                 SRYANDYLLKKRHLQALLDCPRMKKESAAALHSVVDEYERHTKTLRQLGEP
FT                 IDSWSTMLEHLLCLRLDDNTQKAWEDFATTATNPDYSCLIDFLQRRIRVLE
FT                 SMSVNHQAQPTSNQQPTMFRRPPFHKTVSHAVTETTSRKCYSCDQHHPLFQ
FT                 CPRFEKMSIADRLKVVNEHHLCLNCFRQDHLARNCQSKFSCRHCKKRHHSL
FT                 LHPGYHPLNADQPSTTSHTAAYTPKPIVKQDAIINSTKRSPTSTNAVTAQT
FT                 THSSQTSNANVLLSTVVLMVLDCNGQKHPARALLDNGSQSNIISDRLCQLL
FT                 RLKRRKINIPVFGVGESSSSVNHSVSATIQSRNSDFELGLDFLVMPRITID
FT                 LPVVSSPAEGWHVPNDLPLADPTFNKTGAIDMLLGAEHFFTYVNPGTRIEE
FT                 GENPALIQSVFGWIVTGRNQKXLRSPPVACHVSLSDPLHEALERFWRIEEV
FT                 ENQPNYSVEEQQCESHYSSHVSRTPEGRYIVRLPRRENFDHMLGESKSAAL
FT                 RRFHLLEKRLGREPHLKDEYHSFLSEYLLLGHMRLVXPSEIEPHLVHYLPH
FT                 HAVLKEASTTTKVRVVFDGSAKTSTGYSLNDALQVGPIVQDELLTLIIRFR
FT                 KYPVALVADIAKMYRQVLLHPDDAPLQRILWRFHPNDPIETYELATVTYGL
FT                 APSSFLATRTLQQLAADEGDAYPXGGPALKKGFYVDDYIGGANTEEEAIQT
FT                 REELDELLAKGGFQLRKWTSNNPNVLEGLDPSQIGTQPTLKLDNNESTKAL
FT                 GVSWEPGTDQLRFDSAPELGNGPPTKRSILSAVSKHFDPLGLTAPIVIKAK
FT                 MLLQELWLQPCGWDEEISDTMRTKWDSYRTELPKIVSYRTDRFAFLPNASV
FT                 QLHTFADASQQAYGACIYARSTNSHGKTKIQLIAAKSKVAPLKRISLPRLE
FT                 LSAAVIAARLHQKVVVALDMTISASFFWSDSTVTLEWLRSPPYTWNTFVAN
FT                 RVSEIQNTTQGSSWHXVAGKHNPADLITRGMKVDDFLNSDLWHCGPSWLKY
FT                 PETAWPVTMGQLSAPEDFLERRKMVAAIQNQPVANPIFNTSSSYNRLIRVT
FT                 AYCLRFVNACRRKVSMSSQPELDSIPKSITVGEMSIARMLLIKLAQTDAFS
FT                 EEIRYLGKGKPVSKHSSLRLLSPFVDPDGILRVGGRLRLSEQPYLTKHPIL
FT                 LPSSHPLTRLVAKHYHLRLFHGGGRVTLAAIRQEYWPIQGRRVVNTVMRNC
FT                 YRCARASPVPAKQQTGQLPMQRVTPSRPFSITGIDYAGPVYIRAIHKRASP
FT                 TKAYISVFVCFVTKAVHLELVSDLSTPAFITALRRFIARRGCPAHIHSDNG
FT                 KNFEGARNELRELYQLLQEEESSGNVATFCANQGIQWHMTPPKAPHFGGLW
FT                 EAAVKVAKRHLHRQFGDSRLSFEEMSTALAEIESAMNSRPLTPLTEDPNDL
FT                 AVLTPAHFLIGTTPSAIPEDDCSQIPIXRLDHYRGLRHRVQQFWHQWQAEY
FT                 LQELQKESKRIXPNTEIQXGRMVVVVDEFLAPVKWPLARIVNVIPGPDGLI
FT                 RVVDLRTSRGIIRRPITKICXLPFEDAXXX"
XX
SQ   Sequence 5916 BP; 1562 A; 1705 C; 1267 G; 1359 T; 23 other;
     tcttggtgcc gtgaccagga tcaggtttct tcccagaatt cccgccatca tactacggac        60
     gccgacgcta tctaccgcca tcgttccgca ccattgtgtg ccccggcggc attcataaga       120
     tcgccatctt ccccggatcc tattgtgccc acccgccatc gagaagcttc tccggagttc       180
     ccgattgaat tctttaatac aaggcctaat tcaattaggc actcggtacg tataattccg       240
     aagtgcgcag aagtttaccg cgggtgcctt gagatttttt cctgtttttc tcctattcgt       300
     tccggagttt tcgccgaacc ttctggaacc gttcagctgt cgctgctagc aagtaagcta       360
     cgccattgcc atccgtmtac cgattttcat ccgaggacct actacgccgg attcgcaagc       420
     agattcgaat aaaatacaag gcttaaatct agccttgaga aggttagtac cgttcctaca       480
     tccctactcc gcttgtccgg ctctaccggg tcttcctctg tatcccctat ccagtgcaac       540
     ccgactccgc aatggcggaa gaacgttcga gacaacagct catcaaccgc cgtaccactc       600
     tcatcgctgc gctgggacga gcagaacagt ttgtcgagaa atacgtggcg gaacgggacc       660
     gaggccaggt gaaactacgt ctcgagaacc tcgataccgt gtggatggga ctagaagaag       720
     ttcaaaccca actcgaggac atggaactaa ccaatcaagg tatggcacaa aacctcactt       780
     tccgttccca taacgaaacc cgctatttcc aaatcaaagc tgctctgcaa tcattcctcc       840
     ccaatgtacc tcctacaacg aacgcaatcc cccaatcgtc tacttccggg ctgtccggta       900
     tcaaattgcc aaccatatcc ctaccggagt ttgacggcga ctataatcag tggctaccat       960
     tccatgatac attcgtcgcc ctgattcatt ccaatcccga agttcacgac atacaaaaat      1020
     tccactatct ccgcgctgct ctaaaaggag aagcggccca actcatagaa tcgatcggta      1080
     ttagctccgt caactacgcc attgcatggc aaaccctcgt ctctcgctac gctaacgact      1140
     accttcttaa gaaacgccac ttgcaagccc tcctcgattg cccgcgaatg aagaaagagt      1200
     ccgccgctgc acttcattca gtcgtcgacg aatatgagcg tcacactaaa accctccgcc      1260
     aacttggcga accaatcgat tcgtggagca ctatgttgga gcatctccta tgcctccgac      1320
     tcgacgacaa cactcaaaag gcttgggaag atttcgctac gacagccaca aaccccgact      1380
     acagttgcct cattgatttt cttcagcgac gcatccgcgt acttgaatcc atgtcggtga      1440
     atcaccaagc gcagccaaca tccaatcaac aaccaactat gtttcgccgc ccaccgtttc      1500
     ataaaacmgt ttcccatgct gtaaccgaaa ccacttctcg aaaatgttac tcttgcgacc      1560
     aacaccatcc actcttccaa tgtccacgat tcgagaaaat gtccatcgct gatcgcctca      1620
     aagttgtcaa tgaacatcac ctctgcctca attgctttcg tcaagaccac ctcgctcgca      1680
     attgccaatc gaaattctcc tgtcgtcatt gcaaaaaacg acaccattca ttgctacacc      1740
     ccggttacca cccactaaat gccgatcaac catccaccac ctcgcacaca gcagcataca      1800
     cacctaagcc catcgtcaag caagatgcta taataaatag caccaaacga tcacccacat      1860
     ccacgaatgc tgtcactgcc cagacaaccc attcctcaca aacatcaaac gcgaatgttt      1920
     tgctttcgac cgttgtgttg atggtgctcg attgcaatgg acaaaaacac cccgcacgag      1980
     cgttattgga taatggatcg caatccaata tcatcagcga tcgtctatgc caacttctac      2040
     gactaaagcg gagaaaaatc aacatccctg tgttcggtgt cggtgagtcc tcctcgagcg      2100
     tgaatcactc cgtcagtgcc actatccaat cgagaaattc wgacttcgaa ctcggactcg      2160
     acttcctcgt tatgccccgc attacgattg acttgcctgt tgtgtcatct cctgccgaag      2220
     gctggcatgt cccaaatgat ctccctttgg ctgaccctac ctttaacaag accggtgcta      2280
     tcgatatgct cctcggagca gagcactttt tcacctatgt caaccctggt acccgtatcg      2340
     aagaaggtga aaatcccgcc ctcattcaaa gcgtgtttgg ttggattgtc accggtagga      2400
     atcagaaacs cctcagatcg ccccccgtag catgtcacgt ctcactttcc gatccactcc      2460
     atgaagcact ggagcgcttt tggcgcatcg aagaagtcga aaatcagcca aattactccg      2520
     tagaagaaca gcaatgcgaa tcccattact cttcccatgt ttcccgcact ccagagggwa      2580
     gatatatcgt ccgtctgcct cgccgggaga atttcgatca tatgctcggc gaatcgaaat      2640
     ccgcagccct tcgacgtttt catttactcg aaaaacgact gggcagagaa ccacatctga      2700
     aggatgaata tcactctttc ttgtcggagt acctgttact cggtcacatg cggcttgtcs      2760
     caccaagcga aatcgaacca catctggtgc actatttacc ccaccatgcc gtcctaaaag      2820
     aggccagcac tacgacaaaa gtccgtgtag tgtttgatgg atcggccaaa acgtccaccg      2880
     gatattccct caacgatgcc ctccaagtag gcccaattgt tcaggatgaa ctwttgaccc      2940
     tcattattag attccgaaaa tatccggtag cactggtcgc ggacatagca aaaatgtacc      3000
     gccaggtgtt actccatcct gacgatgccc cattgcaacg aattctctgg agatttcatc      3060
     cgaacgaccc aattgaaaca tatgagttgg caacagttac ctacggcctg gctccatcct      3120
     cattcttggc cactcgaacg ctgcagcagc tagcggcaga cgaaggagac gcctacccac      3180
     kcggtggccc agcgctaaaa aagggatttt acgtggacga ctatataggg ggagcgaaca      3240
     cggaagaaga ggcaatccaa acccgagagg agctggacga gctgctggcc aaagggggct      3300
     tccagctacg aaagtggaca tcgaacaatc ccaacgtttt agaaggactc gacccatcac      3360
     aaattggtac ccagccaacc ctgaaattgg acaacaacga atccacgaag gcacttggag      3420
     tgagttggga gccaggaaca gatcaactac gtttcgattc cgctcccgag ctaggtaacg      3480
     gcccgccaac aaagaggtca attttgtcag cagtatcgaa gcatttcgat ccgctgggac      3540
     tcacagctcc gatagtcata aaagccaaaa tgctactgca ggagctctgg ctgcaaccct      3600
     gcggatggga cgaggagatt tctgacacca tgmgaacaaa atgggacagc taccgcaccg      3660
     aattaccgaa aatcgtatcc taccgaactg accgttttgc cttcttacca aatgcttccg      3720
     tccaactgca cacattcgcg gatgcatccc agcaagccta cggcgcttgc atctatgcgc      3780
     gatccaccaa ctcccatggc aaaactaaga ttcagctgat tgctgccaaa tctaaggtgg      3840
     ctcccctaaa aagaatttct ctcccccgat tggaattgtc cgctgccgtc atcgctgcac      3900
     ggctgcacca aaaagtggtc gtagcactcg atatgacaat ctccgcatcc ttcttttggt      3960
     ccgattcgac agtcaccctg gaatggctac gctcacctcc gtacacctgg aacacctttg      4020
     ttgccaacag ggtctccgaa attcagaaca ccacacaggg atctagttgg catcamgttg      4080
     ctggcaaaca caatcctgct gatcttatca ccagaggaat gaaggtggac gattttctta      4140
     acagcgatct gtggcattgt ggaccatcgt ggctgaaata tcctgaaaca gcatggccag      4200
     ttacaatggg acagttgagt gcaccggaag actttctgga acggcgaaag atggtggcgg      4260
     cgatccaaaa ccaacccgta gcgaatccaa ttttcaacac gtcatcctcc tacaatcgcc      4320
     taattagagt gacagcatac tgtcttcgct ttgtcaatgc ttgccgacgc aaagtgtcaa      4380
     tgtcgtctca acccgaattg gattcaatac caaaatcgat cactgtggga gaaatgtcga      4440
     tagcccgaat gctactaatc aagttagccc aaactgatgc gttttcagaa gagataaggt      4500
     acttggggaa ggggaagccg gtatccaaac attcaagctt gcgccttttg agtccgttcg      4560
     tcgatccgga tggaatcctc agagtcggag gtagattgcg tctatctgag cagccctatc      4620
     ttaccaaaca ccccatcctc cttcctagtt cccatccact tacacggtta gttgccaaac      4680
     attaccacct aagattgttc cacggtggcg gccgtgttac actagcagcc atccgccaag      4740
     aatattggcc catacaagga cgacgtgtag ttaataccgt catgagaaac tgctaccgct      4800
     gtgctcgtgc ctcgcccgtt cccgccaagc agcagactgg acagcttcca atgcagaggg      4860
     tcaccccgag tcgtccgttc tccatcactg gcatagacta cgccggacca gtctacataa      4920
     gagcgatcca caagcgagca tcaccgacga aagcttacat cagcgtcttt gtctgcttcg      4980
     tcaccaaagc agtacacctt gagctcgtca gcgatttatc cactccagca ttcatcaccg      5040
     cactccgaag gttcatcgct cgtagaggtt gtcctgcgca tatccattcc gacaacggaa      5100
     aaaacttcga gggtgctcga aatgaactgc gagagttata tcaactgcta caggaggaag      5160
     aatcgtccgg saatgtcgcc accttctgtg ctaaccaggg catccaatgg cacatgactc      5220
     caccgaaagc cccgcacttc ggtgggttat gggaggcggc agtgaaggtt gccaagagac      5280
     acttgcacmg gcagtttggc gattcaagac tttccttcga agaaatgtca acagcactag      5340
     cagagatcga gtctgcgatg aattcacgtc ctttgacacc gctcaccgaa gatccgaatg      5400
     atttggccgt cctcaccccg gcacacttcc tcatcgggac aacgccgtct gctatccccg      5460
     aagatgactg cagccaaatt cccatcmatc gcttggatca ttaccgaggt cttcgtcatc      5520
     gtgtccaaca attctggcac caatggcaag cggaatattt acaggaactg caaaaagaga      5580
     gcaaacgaat cawcccgaac acagagatac aasccggaag aatggtcgtc gtcgtcgatg      5640
     agtttctcgc tcctgtgaag tggccgttag cgagaatcgt caatgtcatc cctggaccag      5700
     atggactcat ccgagttgtg gacctgcgaa ccagcagagg gattatccgt cgcccaatca      5760
     ccaagatctg cwtgctgccm tttgaagatg ckwatgawkc ctgaaaatgt ttagctttga      5820
     tatgtcaaca aaattgtatc attgaattmc ktggatgaat tggtttgtta tgataggagt      5880
     caggtagtga aattcaggaa tttcaggtgg cggcga                                5916
//
ID   BEL-791_AA-LTR repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-791_AA-I;
KW   BEL-791_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-357
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-357
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 103-103 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 357 BP; 116 A; 69 C; 73 G; 99 T; 0 other;
     tgacagttct caaaactgat gtctgccgaa tgaaggtatg ccgtgctgtc agtaagactg        60
     gcagcctaat gaaatattta aaattatagt aaattttata gctctttcaa attgaattat       120
     ttcacacaac gtagggttaa aagacgatgt agtagaataa aatttagtca gttagaatcg       180
     aatcttcgag aaataaaagt tcgtttgagt tcaaagccaa ataaagtgat taaaaagtcg       240
     ataaagtggt gattcttgtg gtgccaagtt cctccgatag tgaccatctc cggtagtgtc       300
     caaccctgtc cgtgtgtgag cccaatccca gccggaaacc acgatcctgc cccaaca          357
//
ID   BEL-792_AA-I repbase;    DNA;    INV; 5867 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-792_;
KW   BEL-792_AA-I; BEL-792_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5867
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5867
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 255-255 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..5822
FT                 /product="BEL-792_AA-I_1p"
FT                 /translation="MATSGHEDVSDPGSPATKQCKRLIIRRNGILGSTKLI
FT                 GAFNENYNPDTDYAQLKFRLQKLDTLWTEFNEVQAEIELEYGLSEELSEGK
FT                 ATFEDMYYRLKGSLDSKLALSNSPSTSSPSTSLSVAPPTHALGVRLPELKI
FT                 PEFKGDFDEWMNFHDLFSTLIHSNQQLSAIQKFQYLKAVLKGDALRLVQSL
FT                 AVTATNYSIAWDLLKQRFDNKNFLIKQHFSALLCISPLKKESSSALSDLAD
FT                 IFEKHIGVLDKLEETDDHWNSFLVEFLSSRLDPTSQKEWENQLPDDQRPTY
FT                 KELVAFIHKRSRVLQSLTLSQSSNANSKIEPRTTRVRVSSHSATTGESSKP
FT                 CVACRKGTHFLSSCEDFLKLTPKQRFNVAKKYGLCLNCLRSSHLVKDCSSG
FT                 SCRTCNKRHHTLLHIDASTTLAVQVENPIPPQSRHASQLASVVESSSSVRA
FT                 CTADQSHVVSREMRPNPSSAGGHSQSFVSPPSVTPSGSAQGSSSVTSCSAV
FT                 TPSSAFATRTNSTIFMLTAYVRVRDIDGNYSLARALLDSASERNFVTENLA
FT                 QRLRLKRERADVDVYGIGNSVQHVTHSVSVNLSSRVAAFSASIDFLVLPSL
FT                 TRILPSTNVDISKWVVPRNLPLADPKFNVAHGIDMIIGIQWFFTLLEDHQI
FT                 ILGPQLPILRKTVFGYAVAGDHATTEKIETVVCNAALTIDKLTTAVQKFWE
FT                 VESFEEGKALSLEEQYCEDHFQSTHARAPDGRYVVRLPIREEMLSELGESL
FT                 PVAHRRFQAMERKFLTNTRLHSDYSQFMDEYKSLGHMEAVDPDLSTPHFFL
FT                 PHHAILRPDSTTTKTRVVFDGSCRSANNLSLNDICYVGPTVQPPLLATSLN
FT                 FRMTKYAITADAEKMYRQIWVHCSDRALQQIVWRKYRSEELKTYQLNTVTY
FT                 GTACAPYLATRVLNQLADDEKERFPLAARLVKRCFYVDDCLAGDDDKQRMM
FT                 ESCDQLIELLASGGFVLRKWSSNDAEILSHIPEHLRDNRDDLEIDKSNSVK
FT                 TLGLLWHPQIDCFGFKVPQLSPSEPITKRIALSEMSRLFDPMGLVGSVIVS
FT                 AKIFLQSLWSNSFSWDSVLPQDYQNWWKFFREELQTLSTLKIPRRVLIDHY
FT                 VHVEMHCFADASDKAYGCCLYIKSIDRSGNSACNLLISKSKVSPLTRQSTP
FT                 RLELCAAVMAAQLADSVKKATELSCSTTFWSDSSIVLHWIASSSSAWKVYV
FT                 SNRIAEIHRLTRGSEWRHVPSEENPADRVSRGVPPSQVVNDQIWWHGPPFL
FT                 RSERNHWPQNIIKLSPLHLRAREEEVRQTVSLVTTSLPMALFLINKYSTLA
FT                 ALTHTLAWVRRFVFNCRLDNANRLVGPLTPKEVDTSLKWIIKQVQNDCFSS
FT                 EIRFLLQHPGTVKKNFNFKSALKKLNPFLDTEGLLRVHGRLEMLDAPFDTR
FT                 YPIILPAKHHLTNLIVTKTHIDTLHAGPQQLLATLQQRFWVIRGRDAAKRV
FT                 VNKCMVCFHCKPKMIQQLMGPLPAARVTPSRAFVKSGVDYCGPFFVRPPNR
FT                 RGNSVKIFVAIFVCMASKAVHIDMVYSLSSDSFVSALKRFTSRRGHVTDVY
FT                 CDNARTFVGANRQLQEHKQQFDDVHRSDALAQSCTEAGINFHFNPARSPHF
FT                 GGLWEAAVKTFKHHLYRIMKTTLLTIEEFQTLITQIEGIMNSRPLTPLTSD
FT                 PADVVALTPGHFLIGEPLHSLPEPDLCDIPVNRLASFQLMQQKVQHFWKVW
FT                 SRDYIGQLQSRQRWPLVQPDVQVGTMVLLKREAVPPMKWPLGRIDTVFPGK
FT                 DGHVRVVQVRTATGSYRRAITEICPLPIETADAANEEPAASSPPAATPHHA
FT                 APLV"
XX
SQ   Sequence 5867 BP; 1524 A; 1441 C; 1362 G; 1538 T; 2 other;
     taatttttgg tgccgaaacc cgggaatttc ggctgcggat catcgccatt gmtactttgg        60
     aggttagcgt gggttttagt tttccsgtca tcccacattt cgaggtggat catcgctatt       120
     tcggggcttt ggatgcccat tagcagcttc agcgcacttc aaggcagttc cagaccacat       180
     ttggaccatt ttcgggcgag atcagcggaa atcgacgagt ctcttgttca gctacgaaca       240
     cgtggtggta ggtcagccaa gtgagcacag ggtagtatca ctacaaagag caggtgagtg       300
     aatagccttt atactcctac ctcattgtat tgccatcgga caaaatggcg acatcgggcc       360
     acgaggatgt atccgaccca ggtagtccag ccactaagca gtgcaaacgt ttgattattc       420
     gccgaaatgg cattctcggc tcgacaaagc tcattggggc ttttaacgaa aattataatc       480
     ccgatacgga ttacgctcag ttaaaatttc ggcttcaaaa gctggacacg ctctggaccg       540
     aatttaatga ggtccaagct gaaattgaat tggaatatgg gctaagcgaa gaactttcgg       600
     agggaaaggc gacctttgaa gatatgtact atcggttgaa agggtcattg gactccaagc       660
     tcgctttgag taactcaccg tctacatcgt cgccaagtac ctcactctct gttgctccac       720
     ctacccacgc attaggcgtt cggctcccag aactcaaaat tccagagttc aagggagatt       780
     tcgatgagtg gatgaatttc catgatttgt tcagtacact catccactca aatcaacaac       840
     tctccgccat tcaaaagttc caatacctga aggcagtatt gaagggagat gcgcttcgtc       900
     tagtgcagtc cctggcagta acggcaacga actatagcat tgcttgggat ctcttgaagc       960
     aacgcttcga caacaaaaat ttcctgatta agcaacattt ctccgctctc ctgtgtatat      1020
     cgccactgaa gaaggagtct tcgtcggcac tctcggatct cgccgatatt ttcgaaaagc      1080
     acattggtgt gctggacaaa ttggaagaaa cggatgatca ttggaattcg tttttggtgg      1140
     aatttctcag cagcagacta gatcccacgt cacaaaagga atgggaaaat cagttgcctg      1200
     acgatcagcg gccaacatac aaagagttgg ttgcatttat acacaagcga tcccgagtgc      1260
     ttcaatcttt gactctctcc caatcctcga acgccaacag caaaatagaa ccacggacta      1320
     ctcgagttcg tgtttcatct cactcagcta ccaccggtga gagttcgaaa ccttgtgttg      1380
     cctgtcgaaa gggtactcac ttcctgtctt cgtgtgagga ttttctgaag ctaactccaa      1440
     agcagcgttt caatgttgcc aagaagtacg gcttatgttt gaactgcctg cggtcctcgc      1500
     atttggtgaa ggactgttct tctggttctt gtagaacatg caacaaacga catcacactt      1560
     tgttgcatat cgacgcttcc actacattgg ctgttcaagt ggaaaatccg atacccccac      1620
     aatcccgaca tgcttcacaa ttggcctcgg tcgtcgagtc gtcgtcgtcg gttagggcgt      1680
     gcactgccga tcagtcgcac gtggtctctc gggaaatgag acccaatccg tcgtcggcgg      1740
     gaggccattc tcaatcgttc gtttctccgc cgtcggttac accgtcaggg tcggctcagg      1800
     ggtcttcgtc ggtgactagc tgctcagctg tcaccccttc gtccgcattc gctacacgga      1860
     cgaattcgac catttttatg ctcacagcct acgtccgggt tcgtgacatt gatggaaact      1920
     actcgctagc tcgcgctcta ttagattcag cttcagagcg aaactttgtg accgagaatc      1980
     ttgctcaacg actgcgtctc aagcgagaga gagcagacgt cgacgtgtac gggattggca      2040
     acagcgtaca acatgttact cattcggttt cggtcaacct atcgtcacga gtagctgcat      2100
     ttagtgctag catagacttt cttgtgctcc ccagcttaac cagaattttg ccgtccacaa      2160
     atgtggacat ttcgaaatgg gttgtgccta gaaacctccc attagctgat ccaaagttta      2220
     atgtcgccca cggcatcgac atgataattg ggatacaatg gttcttcaca ctactagaag      2280
     accatcagat cattttgggt ccccagctcc caatactacg taaaacggta ttcgggtatg      2340
     cagtggcagg tgatcatgcg accacggaga aaatcgaaac ggttgtatgt aatgctgctc      2400
     tcactattga caagttgacc actgcggtgc aaaaattctg ggaggttgaa agctttgagg      2460
     aagggaaggc tttatcgctg gaggaacaat attgcgaaga ccattttcaa agcactcacg      2520
     ctagagcccc tgatggtcgg tatgtcgtgc gattgccgat tcgtgaagaa atgttgtcgg      2580
     aactcggaga gtcgttaccg gtcgctcatc gaaggttcca agcaatggag agaaagtttc      2640
     tcaccaacac aaggctgcat tctgattaca gccagtttat ggatgagtat aagtcgctcg      2700
     gacacatgga agctgttgac cctgatcttt ccactcctca tttctttctc ccacaccatg      2760
     ctatccttcg accggacagt acgacgacta aaacccgagt tgtctttgat ggatcatgta      2820
     ggtcagcaaa taatctgtcg ctaaacgata tttgttatgt aggtccaact gttcagccac      2880
     cactgctcgc tactagtttg aattttcgca tgaccaagta tgctatcacc gctgatgccg      2940
     aaaaaatgta caggcagatt tgggtacatt gctctgatcg tgcactacag caaattgttt      3000
     ggagaaaata ccggagtgaa gagttgaaaa cctaccaact caatactgtg acctatggca      3060
     cagcgtgtgc gccgtatctc gcaacgcgtg ttttgaacca actcgcagat gatgaaaagg      3120
     agcgattccc gttggcagct cgattagtaa agagatgttt ctatgtggat gactgtttgg      3180
     ctggagacga cgataagcag cgtatgatgg aaagttgtga tcaattgata gaattactcg      3240
     cttcgggagg tttcgttcta agaaaatgga gttctaatga cgctgaaatc ctctctcaca      3300
     ttccggaaca tttgcgagac aatcgtgatg atttggaaat tgataaatcg aactcagtga      3360
     aaacccttgg gttgttgtgg catcctcaaa ttgattgctt tggattcaaa gttccccaac      3420
     tatcgccgtc agaaccaata acaaagcgta ttgctttgtc cgaaatgtct agattatttg      3480
     accccatggg cttggtagga tcagtaattg tgtccgcaaa aatcttccta caatcgctgt      3540
     ggtctaattc gttttcatgg gatagcgtgc taccacagga ttaccagaac tggtggaagt      3600
     ttttcagaga agaactccag actctgtcca ctctcaagat tcccagaagg gttcttattg      3660
     accattatgt ccacgtcgaa atgcattgtt ttgcggatgc ctccgacaaa gcatatggat      3720
     gctgccttta catcaaatcg atcgatagaa gtggcaattc cgcttgcaat cttctcattt      3780
     cgaaatccaa agtatctcca ttaacgagac aatcaacccc acgtctcgaa ttgtgtgcag      3840
     ccgtgatggc agcacaacta gctgatagcg taaaaaaagc aactgaattg tcttgttcaa      3900
     caacgttttg gtcagattcg agcattgtat tgcattggat cgcatcttcc tcgtcggcat      3960
     ggaaagtgta cgtctctaac cgcatcgctg aaatccatcg gctcactcgt ggtagcgaat      4020
     ggcgccacgt gccatcagaa gagaacccag ccgatcgtgt atctcgcggg gtgcccccct      4080
     cgcaagtcgt caacgatcag atttggtggc atggaccacc gtttttgaga tctgagagaa      4140
     accattggcc tcaaaatatc atcaagcttt ccccgctaca ccttcgtgcc agagaagaag      4200
     aagttcggca aactgtatcg ttagtcacga cctcgctgcc aatggcactc tttctcatca      4260
     acaagtattc aacattagct gcactcaccc acactctcgc atgggttaga cgatttgtat      4320
     tcaactgtcg cctggataat gcaaatcggt tggttggtcc actcacgcca aaagaagtgg      4380
     atacttcgct aaagtggatt ataaagcaag ttcagaacga ttgcttttct tctgaaatac      4440
     gctttttgct acaacatcct ggtacagtaa aaaagaactt caatttcaaa tctgctttga      4500
     aaaaactgaa tccgtttttg gacactgaag gattattaag agttcatggc cgcttggaaa      4560
     tgttggatgc acctttcgat acccgctacc ccattatact tcctgcgaaa catcatctaa      4620
     ctaacctaat tgtaaccaaa actcacattg acacgttgca tgcgggccca cagcaacttc      4680
     tagctacttt gcagcaaaga ttttgggtta ttcgaggaag agatgctgcg aaaagggtag      4740
     tgaacaaatg tatggtatgc ttccattgta aaccgaaaat gatccagcag ttaatggggc      4800
     ctttgccagc agcgagagtg actccgtcgc gcgcgttcgt gaagtccggc gtggactact      4860
     gcggtccatt cttcgttcgg ccgccgaatc gtcggggaaa ttcggtaaaa atattcgtcg      4920
     cgattttcgt ctgtatggcc tccaaggcag tccatatcga tatggtctat agcctgtcgt      4980
     cggattcgtt cgtgagtgcg ctaaaacgtt ttacatctcg tcgcggtcac gtgaccgacg      5040
     tgtattgcga caatgctcga accttcgttg gggcaaatcg ccagctccaa gagcacaagc      5100
     agcagttcga tgatgttcac cgttcggatg ccctagcaca aagctgcacc gaagctggaa      5160
     tcaacttcca cttcaaccca gcgcggtctc ctcacttcgg agggctgtgg gaggccgccg      5220
     tcaagacatt caaacatcat ctctatcgca tcatgaagac cacactcctg accatcgaag      5280
     agttccagac tctcataact caaatcgagg gtatcatgaa ctcacggcct ctcacaccct      5340
     taacatccga tcctgctgat gtggtagctc taacaccagg gcactttttg ataggagagc      5400
     cgttacactc tcttccagaa ccagatttgt gtgacattcc cgttaatcgt ctcgcttcct      5460
     ttcagctcat gcaacagaag gtacagcatt tctggaaggt gtggtctcga gactacattg      5520
     gtcagctcca aagtcgacaa cggtggccgt tagtccaacc agacgtacag gttggaacga      5580
     tggtactgct aaagagggaa gctgttccac caatgaaatg gcctcttggt cggattgaca      5640
     ccgtgtttcc tggcaaagac ggtcacgtgc gggttgtaca ggtccgtacg gcaaccggaa      5700
     gttatcgacg agccatcact gaaatatgcc ctcttccaat tgaaactgct gatgcagcga      5760
     atgaagaacc agccgcctcc tctccaccgg cagcgacgcc gcaccatgcg gctccattag      5820
     tataagacaa attatatttt gaaagtgcct ttcaacgggg cccgaca                    5867
//
ID   BEL-792_AA-LTR repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-792_AA-I;
KW   BEL-792_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-422
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-422
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 104-104 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 422 BP; 120 A; 80 C; 88 G; 134 T; 0 other;
     tgttgaaact tatttgttta atatgagttc tattgtgaat atttcaagtg aacaatgaca        60
     atattgtaaa attagaatta gtatgcaagt gtaggtaaca atagcttgaa ttggtttctc       120
     tgagttagta tttcatctct cactagtcgg tcacaatagg tggcactcac gctcattttt       180
     acgcttagga gatcctggga tcattataac tagatcgaga ttgagattct tgtaaccagt       240
     tagagtttga ccatcgcgag aaatacacgc ttaaaaccaa gtgtcctcgt cttcgttcct       300
     ttcgcgtccg agaagtctgc cagtgtgatc gcgagtgcag tgaaagtgaa atagaatttc       360
     gaaggaaatc tataccctac gcaaccacgt ctttcgtttc ggccgcagtg agtttcccaa       420
     ca                                                                      422
//
ID   BEL-793_AA-I repbase;    DNA;    INV; 5979 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-793_;
KW   BEL-793_AA-I; BEL-793_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5979
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5979
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 256-256 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..5976
FT                 /product="BEL-793_AA-I_1p"
FT                 /translation="MSRSCQDHDEHSLEQSCLLCGQPDTSQMVSCDECQRW
FT                 YHFACVGVTDAIADYDWSCQRCQGARISAPAITTSAVTSISHIVPSASAEM
FT                 LPEVTSVSHNTAGIVNIACSVPPNNPSTNQRFLQASSSSITCDPTRTYTSF
FT                 MSIPLIDPLTTTAPSTLPPYAVPPPSSHSVQPTPDSPVSLARQNFVSRLPN
FT                 ELRLRFLEEEQALEMKHLFERYQLLLDRVSDSTTSNPPRTAYYSGTASAAA
FT                 QCHLFSAHQPRMATVGLPPAPVLPNPQSHSSPVMNSQSFNRPSRGGICFQS
FT                 HSPPVQNRVNQELLNANPLQTTGFGNDSTMLNRSQIAARQAVSKDLPEYNG
FT                 DPEQWPLFFGTFEGTTRMCGYTAEENMMRLQKCLKGKALEAVRSQLLHPGN
FT                 IDSVLATLKMLFGRPEIIVHSLIQKIQSLPAPKPDKLNTLIDFAIAVRNMV
FT                 ATVQNCNLDEHLCNISLLQSLVDRLPPMIRLNWATHRQGLFRVTLTEFSSW
FT                 LYTLAEAASTVTIPQIQNEPEKPRRLRRDDGFLNAHSEPSPKSCEYGANSS
FT                 GCIICQGGCESVGDCKQFLILDHPSRWNLLREFKLCRSCLAKHSGPCKSTR
FT                 TCGKNGCTFKHHRLLHNDAKDNRPMTSGAIAAGNHHDSACNRTSHNDTGHN
FT                 CNTHQADSKPVLFQYVPVTLHNQGMKIRTYAFLDLGSSVTLLEENLASELR
FT                 LEGHSYPLCLRWTGDTCKYEDSAKIVAVDISGSCDESNLHRLAEVFTVKQL
FT                 KLPYQSLRFKDLSKKHKYLQGVPVDSYSEVQPRILIGMNNVRLAHPLESRE
FT                 GGENEPIAAKTRLGWMVFGTCSTGGHSSSTTIPHSFHVCHHLMETDIELNS
FT                 DVKNYFALESVGISKPERLLLSTEDERAMNMMRSVTKFDNGRYCTGLLWKY
FT                 DDVRLPDSKPMALRRHACLMKRMQRDPDLALTLMNKMDEYIMKGYVRKMSS
FT                 EEQRKQSNRIWYLPMFPVYNPNKPNKVRIVWDAAAVVAGTSLNAVLMKGPD
FT                 QLTALPFVLYRFREKRIAVSGDIAEMFLRIQMNEDDQQCQRILWCDRNGTI
FT                 GEYIVTVMTFGAKCSPSCAQYVVKQNANRFQSEFPEAVEVIEKGHYVDDML
FT                 ASVDTEEEAIKLAKDVRHIHQQGGFTMRNWISNSTVVVNALGDTSTTEKSL
FT                 DVNKDTVLEKVLGMWWDTKTDTFRYKLSTERNQKLLTGQKHPTKRDILRVL
FT                 MSVYDPLGLLSNYMIHLKLLFQEIWRVGISWDDEIGRQQLEKWNHWLDLLP
FT                 TAESVRIPRCYHLSPSRGFERTVELHTFVDASELGYAAVCYFRFTEGEHIS
FT                 CSLVGSKSRVAPIKFVSIPRLELQAAVIGTRLAKSIEEGHSIKITRRYFWT
FT                 DARDVMCWLKSDHRKYSQFVAFRVGEILEATDVSEWKWLPGKSNVADEGTK
FT                 WKNHPNFDVNSRWFSGPPFLSRPIEEWPTTCVNRETKEELRPRLMHHCMYG
FT                 GNNILRPEVYSSWRRIQRISASVLRFPANVRRKMKGEQLLLGPFTSEELLS
FT                 AQIFLFKRAQWECYGNEMTTLSRHEESRTPILPKTSPLYKLGPALDSTGLM
FT                 RIHSRIDVCDFAGENTQFPIVLPRSHPLTKLVLQDIHEKYHHQCNETFVNE
FT                 ARKRFYIPKVRVECNRIRRDCQRCKIRRARPEPPMMANLPQERLAAYVRPF
FT                 SYIGVDYFGPYQVTVRRRPEKRWGVLVTCLTTRAIHIEIANSLSTDSCIMA
FT                 LHNCFGRRGTPIEIISDRGTNFVGASKELKEAQALIDSHHLATEFTTPTTT
FT                 WRFNPPASPHMGGAWERLIQTVKRILTELKLSHSPTDEVLRNSMIKIENIV
FT                 NSRPLTHVPIDDESSPALTPNHFLVGSSNGSKPLVPYCDSAKAVKHSWQTS
FT                 DILANYFWKRWVNEYAPEITRRTKWYSPTKSIVLGDVVIIVDSTLPRNCWP
FT                 KGRVIAIKTSKDGQVRSATVQTISGIYERPVVKLAVLDIAGNRSMLDQGPP
FT                 AGG"
XX
SQ   Sequence 5979 BP; 1704 A; 1402 C; 1402 G; 1469 T; 2 other;
     atttaaagtt tcgttttctc ggatgaastg gatctgggaa taatgtcgcg ttcgtgtcaa        60
     gatcacgacg aacacagttt ggagcagagc tgccttctgt gtggacaacc ggacaccagc       120
     caaatggtta gctgcgatga atgtcaaagg tggtatcact ttgcttgtgt gggcgtaacc       180
     gacgctatcg ctgattatga ctggagctgc cagagatgcc aaggtgccag aatctctgct       240
     ccagcgatca ctacgtccgc tgttacgtca ataagccata tcgtgccatc tgcaagtgca       300
     gaaatgctgc cagaggtaac ttcggtgtct cataacacag ctggaatcgt aaatatagcc       360
     tgctcagtgc cgcctaataa tccatcgacg aaccaacgtt ttttgcaagc gtcttcatcg       420
     agtattacat gtgatcccac gcgcacctac accagtttta tgtcaatwcc attgattgac       480
     ccgttaacga caactgcacc ctcaacactc ccgccgtacg ctgtgccccc tccatcatca       540
     cattcagtac agcctacacc tgattctcct gtgtcgttag ctcggcagaa ctttgtttcc       600
     cgattgccga atgaactccg gctgcggttc ttagaagaag aacaggctct agaaatgaag       660
     cacctctttg agagatacca attactatta gatcgcgtct ccgattcgac gaccagcaac       720
     cctccacgta cggcatatta tagcggtacg gcgagcgcag cagcgcagtg tcatctattt       780
     tcggctcatc aaccacggat ggcaactgtc ggcttaccac ctgctcccgt tctacccaat       840
     ccgcaatctc attcttcccc ggtgatgaat tctcagagct tcaacagacc gtcacgtggc       900
     ggcatttgtt tccagtcaca ttctcccccg gtgcaaaata gagtgaatca agaattgctt       960
     aatgccaacc cactacaaac tactggattt ggaaacgact caacaatgct taacagaagc      1020
     caaatcgctg ctcgccaggc cgtgtccaag gaccttccgg agtataacgg tgatccggaa      1080
     caatggccct tgttttttgg taccttcgag ggcacaacgc gaatgtgtgg atacacagcg      1140
     gaagagaaca tgatgcgttt gcagaaatgc ctaaaaggaa aggcacttga agcggtgcgt      1200
     tctcagttgc tccatccagg aaacattgac agcgtattag caacattgaa aatgctcttt      1260
     ggccgaccgg agataatagt acactcgctt atacagaaga ttcaatcatt accagctcca      1320
     aaacccgaca agttgaacac attgatcgac ttcgccattg ccgttagaaa catggtagca      1380
     acggttcaaa actgtaacct ggatgaacat ctgtgcaata tttctctcct acaaagtctt      1440
     gtagatagac tgccacccat gatacgattg aattgggcga cccatcgaca aggattgttt      1500
     cgtgtaactc tcacggaatt tagctcgtgg ctgtacacgc tcgctgaagc ggcaagtacc      1560
     gtaactatac cgcaaatcca gaatgagccg gaaaaaccac gacgcctacg aagagacgac      1620
     gggttcctga acgctcacag tgagcctagc ccaaaatcat gtgaatatgg agcaaattcg      1680
     agtgggtgca taatttgtca aggaggttgc gaaagtgtag gagattgcaa acagttcttg      1740
     atcttggatc atccgtcgcg atggaatcta ctccgcgaat tcaagctttg ccgaagttgt      1800
     cttgcgaagc actcaggacc atgtaaatcg accaggacat gtggtaaaaa tggatgcacc      1860
     ttcaaacacc acaggttgct gcataacgat gcaaaagata atcgaccaat gacctctggc      1920
     gcgattgcag ctgggaatca tcatgatagc gcgtgtaatc ggaccagtca taacgacact      1980
     ggacacaact gcaacactca tcaagcagat agtaaacccg ttttgttcca gtatgtcccc      2040
     gttactctgc ataaccaagg gatgaaaata cggacctacg cctttctgga tcttggatct      2100
     tcggtcacct tattggagga aaacttggct tccgagctgc gattggaagg acatagctat      2160
     ccattatgtc ttcgttggac tggtgatacc tgtaaatatg aagattcagc caaaattgtt      2220
     gctgtggata tttctgggtc atgcgatgaa tcaaacctac atagacttgc cgaagtcttt      2280
     actgtgaagc aattgaaatt accgtatcag tccctccggt ttaaagatct ttcaaagaag      2340
     cataaatatc ttcaaggtgt accggtggac tcgtattcag aggttcaacc gcgaatactt      2400
     attgggatga acaacgttag actagcgcat cccttggaga gtcgggaagg aggagaaaat      2460
     gagcccattg cagccaaaac gagattggga tggatggtgt ttgggacgtg ttctacaggt      2520
     ggacactcca gctcgacaac gattccacat agcttccatg tttgccatca tctgatggaa      2580
     acagacatag agctcaactc tgatgtaaaa aactattttg ctctggaaag cgtgggcatt      2640
     tcaaagccag agagactgct tctctcaacc gaggacgaac gtgctatgaa tatgatgcgt      2700
     tctgtgacaa agtttgataa tggaaggtac tgtaccggat tattgtggaa gtacgacgac      2760
     gtccgactcc ctgacagcaa gcccatggca cttcgacggc atgcatgtct aatgaaaaga      2820
     atgcagcgcg accccgattt agctttaacg ttgatgaata agatggacga gtacatcatg      2880
     aaaggatacg ttcgtaaaat gtcttcggaa gagcagcgga aacaaagcaa ccgtatatgg      2940
     tatttaccaa tgttccccgt gtacaacccg aacaaaccca acaaagttcg aattgtatgg      3000
     gatgcggcgg ctgtcgtggc agggacctct ctcaacgctg tcctgatgaa ggggccagat      3060
     cagctgacag ctctaccgtt tgtattgtat cgattccggg agaaacgtat agctgtttcc      3120
     ggcgacatcg cggaaatgtt tctccgcatt caaatgaatg aagatgacca gcagtgccag      3180
     cgtattttat ggtgtgatcg aaatggcacg atcggtgagt acatagtaac ggtaatgacc      3240
     ttcggtgcta aatgttcgcc tagctgcgcc cagtacgtag ttaaacaaaa cgcgaatcgg      3300
     tttcaatctg aatttccaga agccgtagaa gttattgaga agggccacta tgtcgacgac      3360
     atgctagcga gcgttgatac ggaggaagag gctataaagc tagcgaagga tgtgcgtcac      3420
     atacatcagc agggaggttt cacgatgaga aattggattt cgaactcaac agtcgttgta      3480
     aatgctttag gggatacctc cacaacagag aaaagcctgg atgtgaacaa ggacacggta      3540
     ttggaaaaag tccttggtat gtggtgggac acaaaaacag atacattccg ctacaagtta      3600
     tcaaccgaac ggaatcagaa attgcttact ggtcagaaac acccaacgaa acgtgatatt      3660
     ctgcgcgtgt taatgtcggt ctacgatccc ctcggcctgt tgtccaacta catgatacat      3720
     ttgaagctgc tcttccaaga aatttggcga gtgggtattt catgggacga cgaaattggc      3780
     aggcaacaat tggaaaaatg gaaccactgg ctcgatcttc tccctacggc cgaatctgtt      3840
     cgaatccctc gatgttacca cctgtcacct tcacgaggat tcgaaagaac cgtagaactc      3900
     catacgttcg tcgatgccag cgaacttggg tatgctgccg tttgctattt ccggttcact      3960
     gaaggagaac atatctcatg ctcattggta ggttctaaaa gtcgagttgc gccaataaaa      4020
     tttgtgtcaa ttccacgtct tgagcttcag gctgcggtta ttggtaccag gttagcaaaa      4080
     agcatcgaag agggtcactc cataaaaatt acacgtcgct atttttggac agacgcacgt      4140
     gacgtaatgt gttggctcaa atccgaccac cgaaaatatt ctcaatttgt tgcctttcgc      4200
     gtcggggaaa tattggaagc aacagatgtg tcggaatgga aatggctgcc aggtaaatcc      4260
     aacgttgccg acgagggcac aaagtggaag aaccacccaa atttcgacgt aaactctcga      4320
     tggttttctg gaccgccttt cttatcaaga ccgattgaag aatggccgac aacgtgtgta      4380
     aaccgagaaa ctaaagagga attgcgacca aggttaatgc accactgcat gtatggaggc      4440
     aataatatac tgcgacctga agtttactcg agttggagac gaatacaacg gatttctgct      4500
     tcagttctgc gttttcctgc taatgttagg cgtaaaatga aaggcgaaca acttcttcta      4560
     ggcccattca ctagcgaaga gttattatcg gctcaaattt tcctcttcaa gcgtgctcaa      4620
     tgggaatgtt atggtaacga gatgacaacg ttgtcgcgtc acgaggaatc aagaacgcca      4680
     atcctaccta agacaagccc tctctacaaa ttaggcccag ctctcgactc gaccggcttg      4740
     atgcgcatac acagtcgtat cgatgtgtgt gacttcgctg gtgaaaatac acagtttcca      4800
     attgttttac cacgaagcca tccactaact aagttagtgc tccaagatat ccacgaaaaa      4860
     taccaccatc aatgtaacga gacgttcgtt aacgaagcac gtaaaagatt ttacatacca      4920
     aaggtgcgtg tcgagtgtaa tagaattcgc agagattgtc aacgttgtaa aattcgtcga      4980
     gcaagaccgg aacctccaat gatggctaac ctaccccagg agagattggc ggcgtacgtg      5040
     cgcccatttt cttacatcgg cgtcgattac tttgggcctt atcaagtcac agttcggaga      5100
     cgccctgaga aacgttgggg agtcctggtg acctgtttga cgactagagc tatacatatt      5160
     gaaatagcta attctctatc gactgattca tgcataatgg ctctgcataa ctgctttggt      5220
     agacggggaa ctccaataga aataataagt gatcgcggaa ccaattttgt gggagcatcc      5280
     aaggagctga aggaagcgca agctctcatc gatagccatc atttggcgac agaattcaca      5340
     acaccaacta caacttggag attcaatcct cccgcgtcac cacatatggg aggcgcttgg      5400
     gagcgattga tacagactgt caagcggatt ctgacggaac tgaaactcag ccattcgccc      5460
     accgacgaag ttttaaggaa ctcaatgatc aaaattgaga atattgtcaa cagcagacct      5520
     ctcacacacg tccctatcga tgacgagtcg tcaccggcct taacaccaaa ccatttcttg      5580
     gtcggttctt cgaatggttc aaaacccctt gtaccctatt gcgatagtgc taaagctgtg      5640
     aaacattctt ggcaaacttc agacattctc gcaaactatt tctggaaacg atgggtcaat      5700
     gaatacgctc cagaaattac tcgcagaact aaatggtaca gccctacaaa atcgattgtt      5760
     ttgggagatg tcgtgattat agtggattca acccttccga gaaactgttg gcccaagggc      5820
     agagtaatag ctatcaaaac ttcgaaggat ggtcaagtgc gctcagcgac tgtccaaacc      5880
     atttccggaa tatatgaacg accggtggta aaattggcgg tactggacat cgcaggaaac      5940
     agaagcatgc tggaccaggg tccacctgct gggggggac                             5979
//
ID   BEL-793_AA-LTR repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-793_AA-I;
KW   BEL-793_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-633
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-633
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 105-105 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 633 BP; 202 A; 120 C; 117 G; 193 T; 1 other;
     tgttgcgaac acccctctgg tagtgccgca cctgctatcc agcaccttgc gcattagatc        60
     agagtgacag cgatgacaac ggattgaatg acatgtatgg catcaacaca aagggaggcg       120
     gaaaaagata ggagtttgta gcgcgaggtt gaaatagtka actctttttc caatattttc       180
     ggctgtaatt gctaatattt tactaagaat ccttatactt tgctattaag ctaattgaac       240
     tctcaggtga gaacaaatta tgaaattata atgaattcgt acagtatatg ccgattgttc       300
     tcaggttccc catttatgag gttatcccat gaatttgctt cgtcactgcg tttactgaca       360
     taactatcat taaggtaaaa ctacaataat aatacccttg taaattctaa aaataactat       420
     tcagtcaggt catattcgcc ctacccgaga ttcagtttaa actgagtagc gagacaataa       480
     tttgagtgct caatgcataa aacgtaagtc tatctgaaat tgtaccagaa caacatatct       540
     aatcatgtag tttgtttata ggaaacttta acgttacccg aataaattcg tttaaaagtt       600
     cgtgacgtct ctgactctgt ggataaggcc aca                                    633
//
ID   BEL-794_AA-I repbase;    DNA;    INV; 6203 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-794_;
KW   BEL-794_AA-I; BEL-794_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6203
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6203
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 257-257 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           458..5725
FT                 /product="BEL-794_AA-I_1p"
FT                 /translation="MSSERRLKGLKTRQKSLLSSFNLIKVYVESFDEEQDA
FT                 PEVPVRLENLIALWNDYKQVQCELEALEDPTDEQFKEKAEFETAYYRVKGF
FT                 LLSMNKSPVPSSPTSSNSSSQFLGSSSHVRLPDVKLPIFNGNLDNWLNFHD
FT                 LFVSLVHASLELSNIQKFYYLRSSLAGDALKLIQTIPISANNYPVAWKLLE
FT                 DHFQNPARLKQTYLDALFEFSTLKRESAVDLHSLVEKFEANVKVLTQLGEK
FT                 TEFWDLILIRMLSSRLDPTTRRDWEEYSSTKNYITFKELTSFIQRRVTVLQ
FT                 TIQGKSVDTPASTIYAKKTTSRSVASHGANQINFGRKCAVCSNHHPLYMCP
FT                 VFSKLEVTEKEKEIRGLQLCRNCLRQGHQARDCPSSTSCRKCRGRHHTLLC
FT                 SGDKPVAANSRNVESIPSTASSTRTLNEQQKASISAIVNEPVSYASTKQSQ
FT                 RSVLLATAVVKLIDDSGVAHTGRALLDSGSECCFITESFSQLLKAQRRKIS
FT                 VPISGIGQSSTYARYKLSASICSRIADFSALVEFLVLPRVTIDLPSASFDT
FT                 SSWNIPPGVLLADPHFYERHPIDIIIGAEIFFDLFNVPGRIQLGESLPTLV
FT                 NSVFGWIVSGKTSNDTLRAPIIANIATLPDVHQLIEKFWKLEEDSNSPIYS
FT                 VEEANCEEHFRRTIRRNNEGRYIVRLPCRENVINQLSDNRNTAVRRFRMLE
FT                 NRLERNSIVAEQYREFMEEYMGLNHMELVHSYQSPPPRCYHMPHHAVVRED
FT                 STTTKLRVVFDASCKTPEGPSLNDALMVGPTVQQEIRSIIMRSRTHKVMII
FT                 ADAKQMYRQVLVDRRDTPLQRIIWRPSPELPLQTYELLTVTYGTASAPFLA
FT                 TRVLQQLADDEQDNFPKAANILRKDFYVDDLFSGADTIEQATELRQQLEML
FT                 LSKGGFQLRKWASNEEAVLEGIPPANRALQTSFDLDRNQCIKSLGLHWEPA
FT                 SDKLKYRIDLPPEFVKTPLTKRSALSQIARLFDPLGLLGPVVITAKLFMQA
FT                 LWLMKTDDGKPFDWDQELPSSMQEAWFTYRSQLLLLNNLRIERFVLSPITI
FT                 SLQYHFFSDASKHAYGACCYIRSTDTSGSTKIALLTARSKVAPLKQQSIPR
FT                 LELCGALLATELYQKVTSALEIPGETFFWVDSMTVISWLKATPSTWTTFVA
FT                 NRVSKIQLATQHCSWNHVSGQDNPADCISRGIPAENLLQNHLWWRGPEWLN
FT                 HAETDWPPQPHHHIVDNFALEETEKRSTKCYNMSTEPTFIDQLVGKFSDYH
FT                 KLLRVTAYCLRFILHCRRKSSFEPNPNYITTKERNDAETTLIRLIQQQSYP
FT                 EEWKHLDQAKTVPSKSRLRWFNPFISTEQIMRVGGRLTQAPQPYDSKHQLI
FT                 LPASHLFSKLLVRSCHERNLHAAPQLLITILRLRYWIIGARSLARSIVHNC
FT                 ITCVRARPTSLQQFMAELPASRVTATRPFTITGVDYWGPIFLQPTHRRAAP
FT                 RKAYVAVFICFSTRAVHLELVVDLSTAKFLQAMRRFVSRRGLCSDIHSDNG
FT                 RNFIGAANELRHLIQSKDYQQSMARECAENGIRWHFNPPRASHFGGLWEAA
FT                 IRSAQKHFVRVLGTHTLPPDEMETLLTQIECCLNSRPIVPLSDDASDFEAL
FT                 TPGHFLVGSSLKAIPDKNLTDISSNRLRNWQQTQKMFQLIWRRWQDEYLST
FT                 LQPRTKWYNSPVSIKQNQLVLLRDENSPPMSWPMARIIELHPGADGVIRVV
FT                 TVRTPTGRYVRPVTKLCLLPIPPTQNELNNNNNSIE"
XX
SQ   Sequence 6203 BP; 1732 A; 1584 C; 1274 G; 1613 T; 0 other;
     tctggtcctt cgaaccggat cccggattga tcgtagaact ccgtctatcc tgggaccgcc        60
     atcatcactg tgaagatcac cgtcggtgcc gccatagtag ctactcaact ggtgcaaagg       120
     tcagccatcg ccgttgcaga ttggaaaaat cagtacaagg ctcgctatag ccttactcaa       180
     ggtaattagc attccataag ctgtataatt tcccatttga gctgcgcggt cttttgcatt       240
     ccagacccgg ctctccgatc gatcttcatt aaatttcatc gttacgaccc ggagatcccc       300
     gtcactctac aggattcccc atctgtactg gagtgtgcga ttgataatac aaggcatttt       360
     atttgccttt aaaaggtaat tagcgtttca aactccttta tttcgtcccg tgtgagctac       420
     gcggtcttct gatttcagac ccagctcact atacaacatg tcgagtgaac gtcggctcaa       480
     aggattgaag acgagacaga agagcctcct ctcttcattc aacctcatta aagtgtacgt       540
     ggagagcttt gatgaagaac aagatgctcc tgaagtcccg gttcggcttg aaaacctcat       600
     tgcactgtgg aatgactaca agcaagttca atgcgaatta gaagctcttg aagatccaac       660
     tgacgagcag ttcaaagaaa aggctgaatt tgagacagcg tattaccgcg ttaaaggatt       720
     ccttctttca atgaataaat ctccagtacc ttcctcgccc acttcttcta attcaagctc       780
     gcaattcctg ggttcttcat ctcatgtgcg gctgccagat gtcaagctgc cgatattcaa       840
     tggaaatctg gacaactggt taaatttcca tgacctattt gtctcactag tacacgcttc       900
     gctcgaattg tccaatatcc agaagtttta ctaccttcgt tcctcgctgg ccggtgacgc       960
     tctgaagttg attcaaacaa taccgataag tgcaaacaac tatccggtag catggaaact      1020
     tctggaagat cattttcaga accccgctcg cttaaaacaa acctacctag atgctctttt      1080
     tgaattctcg acgttgaaac gtgaatcagc ggtcgattta cactcgttgg tagaaaagtt      1140
     cgaggcaaac gtgaaggtgt tgactcaact cggagaaaag accgagtttt gggatctgat      1200
     tcttattcga atgttgagta gccgcttaga tccgaccact cgcagagatt gggaagagta      1260
     ctcttcaaca aaaaactata tcacgttcaa agagcttaca tcgttcatcc aaagaagagt      1320
     aactgtactc cagacaattc aggggaagtc tgtagacacg ccagcttcca ctatttatgc      1380
     aaagaagaca acatctcgtt cagtagcaag ccacggggct aaccaaataa attttggtcg      1440
     aaaatgtgcg gtttgctcca accaccaccc actctacatg tgtccagtct tttctaaact      1500
     cgaggtaacg gaaaaagaaa aggaaataag aggacttcag ctttgtcgaa actgcctccg      1560
     tcaagggcat caagcacgcg attgtccttc gtcaacttca tgtcgaaaat gccgaggtcg      1620
     ccatcacaca ctgctatgct ccggagacaa accagttgct gcgaactcca ggaatgtgga      1680
     atccattcca tcgacagctt catcaactag aactctcaac gaacaacaga aagcatccat      1740
     atccgctatc gtcaatgaac cggtaagcta cgcaagcact aaacaatcgc aaaggagtgt      1800
     tttgttagcc acggcagttg taaaacttat cgacgacagt ggtgtcgcac acaccggtag      1860
     ggcacttctc gactccggca gcgaatgttg ctttatcacc gaatcattct cacagctcct      1920
     caaggctcaa cgtagaaaga tctccgttcc aatatctggc ataggtcaat cgtcaacgta      1980
     cgctcgatat aaactatccg cgtcgatatg ctccagaatt gctgacttct ctgctcttgt      2040
     tgaatttttg gtgctaccca gggtaaccat cgacttacct tctgcatcgt tcgatacgtc      2100
     ttcttggaat atcccgcctg gtgtccttct tgccgaccca catttctatg agagacaccc      2160
     aatcgacata attatcggtg cggaaatatt ctttgatcta tttaatgttc ctggtcgcat      2220
     ccaacttggc gaatccctcc caactctagt taattctgtt tttggttgga tagtttctgg      2280
     gaaaacctct aatgacacct taagggctcc aataattgcc aatatagcga cacttcctga      2340
     cgtacatcaa ctgattgaaa aattttggaa gcttgaagaa gattcgaact ctccaatcta      2400
     ctccgtcgaa gaggccaatt gcgaggaaca ttttcgacgt acaatcagac gaaacaatga      2460
     aggaagatac atcgtgcgac taccgtgcag ggaaaatgta atcaatcaac tcagcgacaa      2520
     ccgcaataca gcagttcgca gattccgcat gttggaaaat cgacttgaac gcaattccat      2580
     cgttgccgaa caataccgcg aattcatgga agaatatatg ggtttaaatc acatggagct      2640
     agttcatagt tatcaatcgc cgccaccgag atgttaccat atgcctcacc atgccgtagt      2700
     tcgcgaagat agcaccacga caaagctacg cgtggtcttc gatgcatcgt gcaaaacacc      2760
     cgaaggacct tccctcaatg atgcactaat ggtgggtccg accgttcagc aagagattcg      2820
     ctccatcatt atgcgttcga ggactcacaa ggtaatgatc atcgcagatg ccaagcaaat      2880
     gtaccggcaa gtccttgtgg atcgacgaga tactccattg caacgtatca tttggagacc      2940
     atcacccgag ctacctctgc aaacttatga actacttacc gttacctatg gtacagctag      3000
     tgcgcctttc cttgctaccc gtgttcttca gcagcttgct gatgatgagc aagataattt      3060
     cccaaaagca gctaatatat tgcgtaaaga cttctacgtc gacgatttat tctctggcgc      3120
     agacacgatt gaacaagcaa cggaactccg acagcaactg gaaatgctat tgtccaaagg      3180
     tggattccag cttcgtaaat gggcgtcaaa cgaggaagca gtattggaag gtataccgcc      3240
     agctaatcgc gctctgcaaa catcatttga tcttgatcgc aaccagtgca tcaagtcatt      3300
     aggacttcat tgggagccag catccgataa gcttaaatat cgcattgatc tcccaccgga      3360
     gttcgtcaag acaccactta caaaacgctc tgctctgtcg caaatcgctc gcctttttga      3420
     cccgcttgga cttctgggtc cggttgtgat caccgcaaag ctgttcatgc aagctctttg      3480
     gctgatgaaa actgatgacg gtaaaccatt cgactgggac caagaacttc catcatccat      3540
     gcaagaagct tggtttactt atcgttcgca actcttgcta ctcaacaatc ttcgaattga      3600
     acgatttgtt ctttcgccaa taaccatttc actccagtat cacttcttct ctgatgcgtc      3660
     aaaacacgca tacggtgcat gttgttatat ccgatcgacg gatacatctg gatcaactaa      3720
     aattgcgctt ttaacggctc gctcaaaggt tgcacctcta aaacagcaaa gtattccgag      3780
     gctagaacta tgtggagcct tgcttgcgac cgaactctat cagaaggtaa catcagctct      3840
     cgaaattcct ggtgaaacgt tcttttgggt tgactcgatg actgtcatca gctggctgaa      3900
     agcaactcca tcaacatgga ccacattcgt agcaaaccgt gtctccaaga ttcaacttgc      3960
     tacgcaacat tgttcctgga atcacgtatc tggacaggat aacccagcag attgtatttc      4020
     tcgcggaatt ccggctgaaa atctgctcca aaatcatctt tggtggcgag gaccggaatg      4080
     gcttaaccac gctgaaaccg attggccacc tcaaccgcat catcacatag tggacaattt      4140
     cgcccttgag gaaacagaaa agcgatcaac taagtgctat aatatgtcta cagagccaac      4200
     tttcattgac caactcgtag gaaaattttc cgactaccac aagctacttc gagttactgc      4260
     ttactgtctt cgcttcatac tacattgtcg tcgaaaatcg agctttgaac cgaatccaaa      4320
     ctacattacc accaaggaac gcaacgatgc tgaaaccaca ctcattcgtt taatacagca      4380
     gcagtcttat cccgaagagt ggaaacatct tgatcaagct aaaactgtcc cgtcaaagtc      4440
     tcgattgcga tggtttaacc cattcatttc aactgagcag atcatgcgag tcggcggtcg      4500
     tctcactcaa gctccacagc cttacgacag caaacatcaa ctgatccttc cagcatctca      4560
     tctattctca aaacttttgg ttcgctcctg ccacgaaaga aatctgcatg ctgcacccca      4620
     attgctaatc accattctac gattacgata ttggatcata ggggccagga gcctagccag      4680
     atcaatcgtc cacaattgta tcacctgcgt tcgtgctcgc ccgacaagtc ttcagcaatt      4740
     tatggcagaa ctccctgcat ctcgggtaac cgctactaga ccgttcacta tcactggcgt      4800
     ggattactgg ggaccgatat ttctgcaacc aactcatcga cgagctgcac cgcgaaaggc      4860
     ctacgttgca gtcttcattt gcttttcaac acgcgcggtg catcttgaat tagtagtcga      4920
     cctgagcaca gcgaagtttt tacaagcaat gaggcggttc gtttcgcgcc gtgggttgtg      4980
     cagtgatatc catagcgaca acggtagaaa tttcattggg gcagcaaatg aactccgcca      5040
     tttgattcaa agtaaggatt accaacaatc gatggctaga gaatgtgccg aaaatggtat      5100
     tcgatggcat ttcaatccgc cgagggcttc ccactttggt ggcttatggg aagctgccat      5160
     tcgttcagca caaaagcatt ttgttcgcgt tctgggaacc catacattgc cccccgacga      5220
     gatggaaaca ttgctgacac agattgaatg ctgtctcaac tctcgcccaa tcgttcctct      5280
     gagtgacgat gcgtccgatt ttgaagcact tactcctggc cacttccttg tcgggtcttc      5340
     gctgaaggcc attccagata aaaacttgac cgacatttct tcaaaccgtc tgcgaaactg      5400
     gcagcaaaca caaaaaatgt tccaacttat ttggagacga tggcaagatg agtacctttc      5460
     tacactgcaa cctcggacga aatggtacaa ttctcctgtc agcatcaagc aaaatcaact      5520
     ggtgctacta cgcgacgaaa attctcctcc aatgtcctgg ccaatggcaa gaattatcga      5580
     actgcatccg ggagccgatg gagttattcg agtagtaact gtccgaactc ctaccggccg      5640
     ctatgttcgg cccgtcacca aactgtgctt gctgccaatt cctcctacgc agaatgaact      5700
     gaataataac aacaacagca ttgaatgaaa ttgcttcgtc aaccacaaga gcaaccacaa      5760
     gccatcgagt ccaagtgatt cgtcatctgt ttgaccaaac attacattcc tggccaattc      5820
     cttccatctt ccaagggttg cagtccggat cacctataaa taaagattca aggtcctttt      5880
     gttaagaagg acaaggtaag aacctgtcct ataacataaa attcgccgta aaccgctacc      5940
     gggtcttttt ttcttttccc aatgttattt tgttatgtga gccgtgcgag tttgctgtgc      6000
     tgataatcat catcgaccaa aacaatgatt gagtttgaca tccacctcaa cgagtgaaac      6060
     gtcaccgctt catcgagttc gtcgacgaga acatctgcaa catctagcgt aacagttgaa      6120
     tagggcttaa caacgcatcc atcgaaaaag tcatgtgaac gcacgcgacc agatgcagaa      6180
     atggaatttc tgaggggcca gta                                              6203
//
ID   BEL-794_AA-LTR repbase;    DNA;    INV; 541 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-794_AA-I;
KW   BEL-794_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-541
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-541
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 106-106 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 541 BP; 177 A; 107 C; 97 G; 160 T; 0 other;
     tgttcgagta ttcactcgaa aaagtatact acggcgacat ctagttgtga cacgaattct        60
     agtgacagca ttttatatcg cctatcatcg atcatggcga ctaacgacag agtgcgttgt       120
     gttgttgtct catcttccgg acaacctcgc caagatggag aaactatcaa ctataaaagg       180
     ccacccgtca tctttcgaat tctctttttt ggcaacatct accaacgatc atcaccgtcc       240
     gtcatcgagc gaagcaacaa acctaaacta ttactgcagt gaattttgaa ttagagacta       300
     aactagtgtt aattagtaat taaattaaga aactgaagtt attaaatgaa gtgaatttgt       360
     gacaaaaata aagtgaatta gtttacttac cttaagaact gcatccgcca tagtgaattg       420
     tatatagtta ttgaacctga aaagaactat tacgtaccgg tgtactagat tgtgtccccg       480
     ttgtgagaat aaaattcagc acagaatcac gtttacactg ctcattgcca ttgagttaac       540
     a                                                                       541
//
ID   BEL-795_AA-I repbase;    DNA;    INV; 5752 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-795_;
KW   BEL-795_AA-I; BEL-795_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5752
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5752
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..5722
FT                 /product="BEL-795_AA-I_1p"
FT                 /translation="MPAPKLKLLLRRRSNILGSATLISDFNRAYEPAHQDQ
FT                 VATQLAFLDELWRDFLSTQEEIEMLEESEEHFSTERRDFQLSYLQLKGSLQ
FT                 NKLPVAPPEQPRAPSSVCAQPMTNVRLPEIKIPVFGGKIDDWVQFRDLFVS
FT                 LIHSNQQLTAVQKMHYLRASLTDEAARIISALDISANDYEVAWNLLKDRYE
FT                 NPNFLIKRHMSALLAINPLKKESAVGLSELADSFDRHVQLLSKLETEEEHW
FT                 NSFLVERLSSCLDSGSLREWETHLVDDERPTYKKLLEFIHKRSRIIKTLTL
FT                 SHPNNTQSESKSTKPRFTSHVASENVKRCPHCKQAHLLFQCSGFQALVPQQ
FT                 RFEFVKKHGLCINCLKGTHLAKDCSSGSCKQCSKKHHSLLHLPPISSASAP
FT                 SASAAVPNQPAPVVVGQSAEAIGSPSYQMSQREISSAVRQPSSGAAPLATS
FT                 SFRTFPHSYSVGIAPSTPSVESLVEINSPPSTSCQSAEVTRNYRQNTVVLS
FT                 TAVIKVKDADNNYHFARALLDSGSQPSFISESLCQKLRLKRVKLNSPVSGI
FT                 GQSTVNVHFGVTVSLASRFGDHRFSLDCLVLPKLTVSLPSHHIDVSRWQIP
FT                 RNLPMADPQFNISQKIDIIIGAELFFTLLEHQQISLAAGYPLLQKTVLGYI
FT                 VCGKIPDPAHDTPAVQTSHICTDDLLDKQLERFWEIDNFDVGRSYTPDEQR
FT                 CEDLFQQTVDRDSSGRYIVRLPLREEMLPMLGDSYQLAFRRLQSMEKKFAV
FT                 DEALRIAYHQFLEEYESLGHMEEVSPRAPRSSQFFLPHHAIHRPESSTTKI
FT                 RVVFDGSCRSASSLSLNEVLFVGPTVQPALYSTVINIRLPRYVVTADAEKM
FT                 FRQIWVHPDDRKYQQILFRKDPSEPVRIYQLKTVTYGLASSPYHATRVLNQ
FT                 LAIDEGERYPLAVPVIKKGTYVDDVLTGDDDEVKLAETCRQLIEMLHQAGF
FT                 VLRKWATNNNAVLASVPSQLWETKPELEIDRSTAIKTLGLLWLPKSDTFQV
FT                 KIPALPLLDVATKRLVVSEMSQLFDPLGLLGPVVMKAKVFVQVLWTEQWPW
FT                 DDKLSEKHTAWWSTYRSELNQLQALSVPRRVVQNRNYSLHCFCDASKTAYG
FT                 CCIYVVSRDTFGQLHSHLLTAKSRVAPLRGQSIPRLELCAALLGSQLADNL
FT                 RRTTDFVDPPTFWVDSTIVLHWIKSQSNVWKIFVSNRIAEIQRLTKGFEWR
FT                 YVPSEMNPADRISRGMMASQISKDDLWWHGPSFLKDPVDSWPECLVSPPTN
FT                 IELQQEACPVALHSAIDDSTLFDRYADLAKLIRIVAHCFRFFNNAKLPRSE
FT                 RTVGSLTPEECEHALKILVRQVQLASFPAEVRQYSRSQANPSAAKIPMSKS
FT                 PLKGLKLFIDKFGLLRLFGRLSNMKASFDTRYPILLPADHQLSWLIARSCH
FT                 IRTLHGGPTLTLATMRQRFWPIRGRRLARKVVRQCVTCFRCQPRLAQQVMA
FT                 PLPSVRVSPARPFIHSGMDYCGPFLVRPLSGRGASVKVYVALFVCLVVKAV
FT                 HLEVVADLSSAACINAVKRFVARRGRLLELHCDNATAFVGADRELRKMREE
FT                 FRRQFRSEDWNNFCQESGIKFRFIPARSPHFGGIWEAGIKSFKHHFRRIMG
FT                 NRSFTVDQLQTVVAQIESVLNSRPLSPLSDSPDDCSALTPGHFLVGEPLLA
FT                 IPEPDLLDVNPNRLSRLQEMKKSVQDLWRCWQLDYVSQLQQRTKWKRSQPD
FT                 VRVGQLVVVKQANAPPLQWPLGRIVETVTGKDGRVRVVVIRTASGQYKRAV
FT                 TEIAILPLAPDDDNPQDDNGTQADDG"
XX
SQ   Sequence 5752 BP; 1392 A; 1591 C; 1369 G; 1400 T; 0 other;
     ttttttggtg ccgaaacccg ggaacgtgcg ttgcattgtg tcgccattgt tctacgccat        60
     tgttcgaggt tccagttgac cgccattgtt gtacgggtcg cgttcagcac gtgtttcccg       120
     ttttagtgta gtgcagtgtt tcgttcccgt ggaagaatac tggccaagcc agctcgtcgc       180
     tcccgttggc tccagcagca ccggaggaaa gcagcatcgt aggtgtaccc ttcccagcca       240
     cagcagtcag caacagtaaa atcggtgagg tagagtaagc ccccgatagc aggtacgtgc       300
     ccattctggt ggtggtgatt gatttttaat tatgccagcg ccaaagctga agcttttact       360
     ccgtcgtcga tcgaacattt tgggatcggc gacgctcata agcgatttca atagagcgta       420
     cgagcccgct catcaggacc aagtagccac acagcttgcg tttctcgatg agttgtggcg       480
     tgatttcctt tccacccaag aggaaatcga gatgttggag gaaagtgaag agcatttctc       540
     cacagagcgt cgagatttcc aactgtcgta cctccagttg aaggggtcgt tacaaaacaa       600
     acttcccgta gcccctcctg aacagcctcg cgcaccgtct tcggtatgcg ctcagccaat       660
     gaccaacgtt cggctgccgg aaatcaagat tccggtgttc ggaggaaaga ttgacgattg       720
     ggtacaattt cgcgatcttt tcgtctcgtt gattcactct aatcaacaat tgacggcagt       780
     gcaaaagatg cactatttgc gagcatcatt gacggacgag gcagctcgca ttatttccgc       840
     ccttgatatt tccgccaatg attacgaagt agcgtggaat cttctgaagg atcggtacga       900
     aaacccgaac ttccttatca agcgacacat gtcggctcta ttggcgataa acccgctgaa       960
     gaaagagtcc gctgtaggac tgtcggagct ggccgacagc ttcgatcgcc atgttcagtt      1020
     gctcagcaaa ctagaaaccg aagaagaaca ctggaactca tttcttgttg agcgattgag      1080
     cagttgccta gactcaggct cactgcgaga gtgggaaacc catttggttg atgacgagcg      1140
     ccccacgtac aagaaacttc tcgagttcat ccacaaaaga tcgcgaataa tcaaaaccct      1200
     aacgctctcc caccctaaca atacccaatc agaatcaaaa tcaacgaagc cacgcttcac      1260
     gtcccatgtc gcttctgaga acgtgaaaag gtgcccacac tgcaagcaag cgcatcttct      1320
     gtttcagtgc agtggttttc aagctctcgt tccccagcaa cggttcgaat ttgtcaagaa      1380
     gcacgggctt tgtataaact gcttgaaggg tacacacctg gcgaaggatt gctccagcgg      1440
     ttcctgcaag caatgctcca agaagcatca ttcacttctg cacttgccgc cgatttcgtc      1500
     tgcttcggct cctagtgcat ccgcagcagt tcccaaccaa cccgcaccag ttgtagttgg      1560
     tcaatccgct gaagcaatcg ggtcaccctc gtaccaaatg tcgcaacgcg aaataagctc      1620
     cgccgtacgt caaccgtctt ccggtgccgc accactcgcg acgtcgtcgt ttcgaacgtt      1680
     tccgcactcg tattccgtcg gtatcgcccc ctccactccg tcggtcgaat ctctcgtcga      1740
     aataaactcg cctccctcca cctcctgtca aagtgctgaa gtgactcgta attatcgcca      1800
     gaacacggtt gtgctttcga ccgctgttat caaagtgaaa gatgccgaca acaactatca      1860
     tttcgctaga gctctgttgg acagtggttc ccaacctagc ttcatcagtg agtcgctctg      1920
     ccagaaactt cggttaaagc gtgtcaagct caactcaccg gtcagtggaa ttggccagtc      1980
     caccgtgaac gtccacttcg gtgtaacagt ttcgctcgct tcacgcttcg gagatcaccg      2040
     cttctctctc gactgcctgg tactgccaaa actaacagta tcgctaccca gccatcacat      2100
     cgacgtttct cgttggcaaa ttcctcgtaa tcttccaatg gcggatcccc agttcaacat      2160
     tagccagaag attgatatca ttatcggtgc tgaactgttc ttcacattgc tagaacatca      2220
     gcaaatttcg ctcgcagctg gatacccgct actacagaag accgtgctag gatacatcgt      2280
     atgcggaaaa ataccagatc ctgcccatga tacgccggca gtccagacaa gtcacatttg      2340
     cactgacgac cttcttgaca agcaacttga aagattctgg gaaattgaca acttcgacgt      2400
     cggcagaagc tacactcccg acgagcaacg ctgtgaagat ctattccaac aaaccgttga      2460
     tcgagattca agtggaaggt atatcgttcg tttaccgctg cgagaggaaa tgctgccaat      2520
     gctaggcgat tcctaccagc ttgccttccg tcgccttcaa tctatggaga agaagttcgc      2580
     tgtcgatgaa gctcttcgta tcgcctacca ccagttcttg gaggaatacg aaagcttagg      2640
     tcacatggag gaggtgagtc cgcgcgcgcc gcgtagttcg cagttttttc taccccacca      2700
     tgccatccac cgtcccgaga gttcaactac gaaaattcga gtcgtctttg atggatcatg      2760
     tcgaagcgct tcaagcttat cgcttaatga agttttgttc gttggaccaa cagtacagcc      2820
     agctctgtat tctacggtca ttaacatccg cttacctcgg tacgtcgtca ccgcagacgc      2880
     cgagaaaatg tttcgacaaa tctgggtaca cccagatgac cggaagtatc aacagatatt      2940
     gttccggaaa gatccatcag aaccagttcg catctatcag ctgaaaaccg tcacatacgg      3000
     actcgctagc tcgccttatc acgctactcg tgtactcaac cagttggcca ttgacgaagg      3060
     agaacgctat ccgttggcgg ttcctgtaat taagaaggga acatacgtag atgatgtcct      3120
     cacaggcgac gacgatgaag tcaagctcgc cgaaacgtgt cggcagttaa ttgagatgtt      3180
     gcaccaagcc ggcttcgttc ttcgaaaatg ggcaaccaac aacaacgccg ttctcgccag      3240
     cgttccttct cagctgtggg aaacaaagcc agaactggaa atcgatcggt ctactgccat      3300
     caagactttg ggacttctct ggcttcctaa gtcggacacc ttccaagtca aaattccagc      3360
     actgcctctg ctagatgtcg caaccaaacg cctcgtcgtg tccgaaatgt cgcagctgtt      3420
     cgatcccctc ggccttctgg gacctgtagt gatgaaagcc aaagtgtttg tccaagtgct      3480
     ttggacagaa cagtggccgt gggatgacaa actgtctgaa aaacacaccg cttggtggtc      3540
     aacctaccgt tcggagctca accaactaca ggcactctcc gtgccacgca gggtcgtgca      3600
     aaaccgcaat tatagtttgc actgcttctg cgacgcatcg aaaacagcat atggatgctg      3660
     catctacgtc gtttctcgtg atacatttgg acagcttcac agtcatctac tgactgccaa      3720
     gtctcgtgtt gctccactgc gtggacaatc catccctcgt ctggagcttt gcgccgctct      3780
     tctcggcagt caacttgccg acaatcttcg gcgtacaaca gatttcgtag atcctccaac      3840
     attttgggtg gattctacca tcgttcttca ctggataaaa tctcaatcca atgtctggaa      3900
     gattttcgtg tcgaaccgga tcgcagagat ccagcgcctt actaagggct tcgagtggag      3960
     atacgttcca tcggaaatga atccagccga ccgtatttca cgaggaatga tggcaagtca      4020
     gatctcgaag gacgatttgt ggtggcatgg tccgagtttt ctcaaagatc ccgttgacag      4080
     ttggccggag tgtttggttt cgccgccgac caatatcgaa ttacaacaag aagcttgccc      4140
     agtagctctg catagcgcca ttgacgactc aacactgttt gaccgttatg cggacctcgc      4200
     caagctgatt cgtatcgtgg cacattgctt ccgatttttc aacaacgcaa aactccctcg      4260
     gagtgaacgc actgtcggtt cactcacccc agaggaatgt gaacatgcgc tcaagatcct      4320
     cgtaagacag gttcagctag catcttttcc tgctgaagtt cggcagtaca gccgcagcca      4380
     agcaaatcct tcagctgcaa aaatacccat gtcgaaatca cccctcaaag gtctgaagtt      4440
     gttcatcgat aagtttgggt tgttaaggct tttcggaaga ttgtcaaaca tgaaagcatc      4500
     cttcgacact cgctacccaa tactccttcc cgctgatcac cagctcagtt ggcttatcgc      4560
     ccgatcatgt cacatccgaa cacttcatgg cggtccaacc cttacactcg ccactatgcg      4620
     ccagcgattt tggccaattc ggggtcggcg gctagctcgt aaggtggtac gtcaatgcgt      4680
     aacctgtttc cggtgtcaac cacggctagc tcagcaagtt atggcacctc ttccctccgt      4740
     tcgtgtatca ccagctagac cgttcataca ctctgggatg gattactgtg ggccgtttct      4800
     cgtacgtccg ttaagtggtc ggggcgcgtc ggtaaaagtt tacgtcgcgt tattcgtgtg      4860
     tctcgtggtg aaggccgtgc atctcgaagt cgtcgcagat ctgtcgtccg ccgcctgcat      4920
     aaacgccgtt aaacgcttcg tggcacgccg tggtcggtta ctcgaactac actgcgacaa      4980
     cgcgactgct ttcgtcgggg cagatcgaga acttcgtaaa atgcgggaag aatttcgtcg      5040
     tcaattccga tcagaggact ggaacaactt ctgtcaggag agcggaatca agtttcgctt      5100
     catcccggcg cgttcaccgc acttcggcgg tatctgggaa gctggaataa agtccttcaa      5160
     gcaccacttc cgacgcatca tgggcaaccg ctcattcacc gtggaccagc tgcagaccgt      5220
     cgttgcccaa atcgaatctg tcctcaattc ccgccctctt tctccgcttt cagattctcc      5280
     agacgactgc tctgctctga cacctgggca ttttcttgtt ggtgaacctc tcttggcaat      5340
     ccctgaaccc gacctcctcg atgtcaaccc gaatcgcctg tcacgcttgc aggagatgaa      5400
     gaaatccgtc caagacctat ggcgttgctg gcagctagac tacgtcagtc aacttcagca      5460
     gagaacaaag tggaaacgat ctcaaccaga tgtacgcgtt ggacagttgg tggtcgtcaa      5520
     gcaagcaaat gcgcccccgc tacaatggcc gttgggaaga attgtggaaa ccgtgacagg      5580
     gaaggatgga agggtccggg tggtcgtgat caggactgcc tctggacagt acaagcgagc      5640
     ggttactgaa atcgctatcc tgccgttagc tccagatgac gacaatccgc aggacgacaa      5700
     cggaacccaa gcagatgatg gttgaaccgg acggcttcaa cggcggccgg ca              5752
//
ID   BEL-795_AA-LTR repbase;    DNA;    INV; 370 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-795_AA-I;
KW   BEL-795_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-370
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-370
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 168-168 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 370 BP; 110 A; 93 C; 56 G; 111 T; 0 other;
     tgttaatgat taaatattga taaatttaag gaactactat atgccactta cctctaaaca        60
     tatactacac tgatacactt ttacacttat aattataata cacagccaac ccatagaaca       120
     tgcagatacg tatcgaaccc tcaacaatac tagcctatag tcagtctaat aaagctattc       180
     aaatagaacg cacgtgttct ttctcgcgtc gtgtcggtcg gtcattccga atttgcccaa       240
     gtgccaatta gtgtcccgtt ttttcgctac tttcgccgtc gtttttcctc cctaaagctg       300
     ctccgttgtg atcatatcac aaaccgtgat ccgagccaat cgccgcgagt gatcattaga       360
     atcgcaaaca                                                              370
//
ID   BEL-796_AA-I repbase;    DNA;    INV; 6495 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-796_;
KW   BEL-796_AA-I; BEL-796_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6495
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6495
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 258-258 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           955..6237
FT                 /product="BEL-796_AA-I_1p"
FT                 /translation="MPLKDDKILTDKLVQRQSLIAIRNAVEKFVKDFEAVR
FT                 DRXQVQVRIETLDRVNTAFAEVQDVIERLDPEHLEAHLTERVDFEHRYCAA
FT                 KGYLLSKRPAENNQPALNSSFVAQAANFHLRLPQIDLPRFNGDFSRWLSFR
FT                 DTFSSMVHSNADIPTVAKLQYLLQSLEGEAKKPFESVDIEADNYACTWDAL
FT                 LKRYDNRRSLKRQLFRALYDLPAVKQESAKRIHGLVDDFQRHVRALAKLNE
FT                 PVEHWDTPLVNILSYKLDQSTLRAWEEKTSTKDDVTYDELVEFLYQRVRVL
FT                 NSVGCEHQQPAPSSKVAGNIPKSTKFKFTANAAASSISPSTCPLSCSDNHV
FT                 LRNCPVFLGKDVRLRREFATQKRLCWNCLGSGHQAKKCSSKFTCRTCHEKH
FT                 HSLLHDPAISKTSSSSAVASSPSVQQPSPSTSVDTPSSAPPKVSMAVQTAC
FT                 NTVLLETVVLNVIDDHGHEHQARALLDSASMSNFISKPLAKLLFNPRSKVD
FT                 VSIAGIGSSKQNVKSAITATIQSRTQDFSTKLEFLILKNPSAQLPTIPINI
FT                 SSWDIPNVALADPRFHVPGRIDLVIGSEAFWELHSGRKIPLGDGLPWLAET
FT                 PFGWAVAGAAASQYTCIPRICNLSTKDXPLEVILQRFWEIETISDGPARSV
FT                 EENRCEEQYSATTTRDPSGRYIVRLPRTDNPEVVLGSSREIADRRLLSVER
FT                 RLERDPATKDAYHRFMDEYLQLGHMKKLDEPVDDNQPHCYIPHHAVFKESS
FT                 TTTKVRVVFDASCKTSSGHSLNDTLVVGPVVQEDLHSIVLRFRIRCIALVA
FT                 DVEKMYRQILHFPEDRRFLRIRFRKSSTDPISTYELQTVTYGTASAPYLAT
FT                 RTLQQIAHDNGHLYPAAVDPVIYDFYIDDLLSGANDVESAIQVREQVTSML
FT                 NDAGLPIKKWASNVPEVLDGVPPEDLALQPLHDLQDEQAVSTLGLMWEPRT
FT                 DALRFKVQLPPPAAVLTKRKVMSYIAQIFDPLGLVGPTIVVAKLFMQRLWA
FT                 LKQNGESCEWDTPLPVKLQAEWKDFHSTLHMLGEIRVPRFVSLPNAVNLQL
FT                 HFFSDASKGAYGSCCYVRAETSNGVSIQLLTAKSKVAPLSSRHSIARLELC
FT                 AARLSAQLFQKVFSALKIPLPAYFWTDSTTVLHWLRSPPNRWKAFVANRVS
FT                 QIQHISNVSRWKHVPGVDNPADXISRGLHPIDIIQCKRWWNGPDWLSLPPE
FT                 CWPSLIPTDEXTEAATEEMRKIPLVSMGVVQSDFHDNLFARYSSFSKLRRV
FT                 TAFCLRYLRTLQERAKLRLKDPDKYSQLTFRDQPITPLNTGELQSAELELC
FT                 RLAQRQSFAEEXSDLASGEFVAKSSAXKWLKPFIDQDGIIRVGGRLRNAAL
FT                 SDFVKHPIVLSAKHQLSTLLASFFHLKLLHAGPQLLLATLRQKYWILGGRN
FT                 LSKSVFHHCHTCFRSKPTLVQQSTADLPASRVSPTRPFSVCGVDYCGPFFI
FT                 KSPVRNRAPTKAYVAIFVCFATKAVHIELVSDLTTAAFLAALRRVVARRGR
FT                 IAELHSDNATTFKGASHALNRVYRMLKVDNSDRNRIFSWCSENEIRWKFIP
FT                 PRAPHFGGLWEAAVKSAKKHLLKTVGNTNIAYEPMVTLLAQVEMCLNSRPL
FT                 TPMPSEPSDMEVLTPGHFLVGANLQAVPEPDLREIPDNRLESYELVQKHLQ
FT                 NIWARWYPEYLQQLQSRATKGCKPPVAVEVDRIVVIKEDNVPPASWPLGRI
FT                 VKLHPGKDGVVRVVTLRTAPGKDIVRAVAKIALLPSPDPTI"
XX
SQ   Sequence 6495 BP; 1551 A; 1764 C; 1618 G; 1542 T; 20 other;
     ttttttggtc cttcgagccg gatcgaaggc catcccgcgg tcgaaaagtg aaaaagtgcc        60
     ggtaaagsaa aaattckctg accagccacg ctggtgcgaa agtgaagcca ttgtgcacat       120
     tggcataaag gcgccatcgc gcttggaggt kgctacccac gcggtacgcc tgaacgtgtg       180
     aacaaaagag cgaagtgaac gttgtacgcg cgcgtgtgaa agctattcgg tgctkgctaa       240
     ttaattakcc cgaacggaat cgatcgcccc gccggtgagt gaaattgagt gtttggtgga       300
     ttgaaaaagt tacgctgtgt ggagctgttt cgtcgccatc ttgtgaaccg tgggcattca       360
     acgaggtgat tgacccccaa ttgccattgt catcggagcc attttgtacg ccgagcaagc       420
     gtccccaack attggtgtca agcggtggta gtggtggtac gaacaccatc gctaggattg       480
     gagcggccat cttcgtcatc taaagcccgg tgagttcgtt cctttttcta tgcatgtggc       540
     ttgcagtagc gattaagaaa gtgaatgcta tttccaacca atwtgaacat tatttcattt       600
     ggttgacgaa agttgggtga cttttacgat ttttcttaag tcattgtggc aattggtgga       660
     agacggtgcg caattcaagt ggaaaacgtt cgcgcccttg attgcgttcc gcgtaggatt       720
     gggattgttc gcgacgggaa ggagtttgcg ttttcgagta aaacagccct ctcccgttcg       780
     ttactgtcgt cgtgaaggcc aatacaccgc gacgggaagg atttgaatcg ttcgattgtg       840
     tatttgtgcc wcgccggttc ggtttcgcgt agaatcgagt agctcgcgcc gggaaggaga       900
     tccgtttcga tttgctaccg tttccgtacg tagtccgttt gtgtccccgc cgaaatgcct       960
     cttaaggacg acaaaatcct tacggacaag ttggtccagc ggcagtcgtt aatagcaatt      1020
     cggaacgctg tcgagaagtt cgtcaaagac ttcgaggcag tgcgggacag atgkcaagtg      1080
     caagtgagga ttgaaaccct ggaccgtgtg aatactgcct ttgcggaagt tcaagacgtc      1140
     atcgagcgat tggatccgga gcatctcgag gcacacctga ccgaaagagt tgacttcgag      1200
     catcgatatt gtgcagcgaa aggatatttg ctgtcgaaac gtcccgccga aaataatcag      1260
     ccagcgttga actcctcttt tgttgctcaa gcagccaact tccatctccg tttaccgcag      1320
     atcgatcttc cacgtttcaa cggtgatttc tcgcgttggt tgtcgtttcg ggacacattc      1380
     tcgtccatgg tccactctaa tgcggacata ccaacagtcg ccaaactgca atatcttttg      1440
     cagtctctcg aaggggaagc gaagaagccc ttcgaatccg tcgacatcga agccgacaat      1500
     tatgcttgca cttgggacgc tctcctcaag aggtacgaca accgtcgttc tctgaagcgt      1560
     caactgtttc gagcactcta cgatttgcca gcggtgaagc aggaatctgc taaacgcatc      1620
     cacggtctgg ttgacgattt ccagcgccat gtacgggcac tagcgaaact caacgaacct      1680
     gtggaacact gggacacacc gttggtaaat attctttcgt acaagttgga ccaatccact      1740
     ttgcgagcct gggaggagaa aaccagtacg aaagatgatg tgacgtacga cgaactggta      1800
     gagttcctct accagcgtgt acgagtgctg aattccgtcg gctgcgagca ccagcaaccg      1860
     gcaccttcgt ctaaggtggc cggaaacatt ccaaaatcaa cgaagttcaa gttcacagcc      1920
     aatgccgctg catcctccat ttctccttcg acatgtccat tgtcgtgctc tgacaatcac      1980
     gttctacgca actgtcccgt atttctcggg aaggatgtac gccttcgccg agaattcgct      2040
     acgcagaaac ggttgtgctg gaattgtttg ggcagtggac accaggcgaa gaaatgttcg      2100
     tcaaagttca cgtgtcgcac gtgtcacgag aagcatcatt cgttgcttca cgatcctgct      2160
     atatccaaga cgtcgtcgag ttccgccgtg gcatcatctc cttctgttca acaaccgtct      2220
     ccgtccacaa gcgtggacac tccgagctcc gctcctccca aagtcagcat ggcagtccaa      2280
     actgcatgca acacagtatt gttggaaacg gttgtcctca atgtaatcga tgaccacggc      2340
     catgagcacc aggcaagggc cttgctggat tcggcgtcca tgtccaactt catttcaaag      2400
     ccattggcaa agctactctt caacccacgg tcgaaggtgg acgtttccat agcaggcatc      2460
     ggctcctcaa agcagaacgt aaaaagtgcg ataaccgcaa cgatccaatc gagaacacag      2520
     gatttttcga cgaagttgga attcctcatc ctcaagaacc cttcggcaca gttgccaact      2580
     atcccaatca atatatcgtc gtgggatatc ccgaatgttg cgctagcgga ccctcggttc      2640
     cacgtcccag gaaggataga tcttgtcatc ggaagtgagg cmttctggga actccacagt      2700
     ggccggaaga ttccattagg agatggactt ccgtggttgg ctgaaacacc atttggatgg      2760
     gccgtcgctg gggctgctgc aagtcagtac acttgcatcc ctcggatctg taacctttct      2820
     acgaaagatg akccgttaga agttattctc cagagattct gggaaatcga aaccatctcc      2880
     gatggtccag cacggtctgt agaagagaac cgctgtgaag agcagtactc agcaacaact      2940
     actcgtgatc cgtctggacg gtatattgtc aggcttcctc gaaccgacaa tcctgaagtc      3000
     gttttaggaa gctccaggga aatcgcagat cgccgtcttc tgagtgtcga gcggcgactc      3060
     gaacgtgatc ctgcaaccaa ggacgcgtac caccgtttta tggacgaata cctccagcta      3120
     ggtcacatga agaagctcga cgaaccagta gacgacaatc aaccgcactg ctacattcca      3180
     catcacgccg tcttcaaaga gtcgagtacg acgaccaagg tcagggttgt tttcgacgcg      3240
     tcgtgtaaga cgtcatccgg acattcgctg aacgatacgc tggtagtcgg acctgtcgtt      3300
     caggaagatc ttcactcgat tgtattacgc tttcgaatac gctgtatagc ccttgtcgcc      3360
     gacgtggaga aaatgtatcg gcagatactc cactttcccg aggatcgcag attcctccgc      3420
     attcggttcc ggaagagctc caccgatccg atttccacct acgagctgca gacagtgact      3480
     tacggtactg cttctgcacc ttatctcgcc acgagaactc tacagcaaat tgctcatgat      3540
     aatggacacc tgtatccagc tgctgtagat cctgtcattt acgactttta catcgatgac      3600
     ctgttgtcag gggcgaacga cgtagagtct gcgattcaag tgcgagagca agttacgtcc      3660
     atgctcaatg atgctggctt accgatcaag aagtgggcgt caaatgttcc ggaagttctc      3720
     gacggtgtac caccggagga cttagccctg caaccactac acgatcttca ggacgagcag      3780
     gcggtttcca cmctgggtct gatgtgggaa ccaagaactg acgcactacg tttcaaggtc      3840
     caactgccgc ctccggctgc agtccttaca aagcgaaagg tgatgtcgta catcgcgcaa      3900
     atattcgatc cacttggtct cgtgggtccc accatcgtag ttgccaaact cttcatgcag      3960
     cgcttgtggg cgctgaagca gaatggagaa tcttgtgaat gggacacgcc gcttccagtc      4020
     aaacttcaag cagaatggaa agacttccac tccacgctgc atatgctcgg tgaaatccga      4080
     gttccaagat tcgtttcact tccgaatgct gtcaatctcc agctacactt cttctccgac      4140
     gcctccaagg gagcttacgg ttcctgttgc tatgtacggg ccgaaactag caacggcgta      4200
     tcgatccagc tactaacagc gaaatctaaa gtagccccgt tatctagtcg ccattcaatt      4260
     gcccggcttg aattatgtgc tgcacggctg tcsgcgcagc tattccagaa agtgttctcc      4320
     gcccttaaga taccactgcc agcgtatttc tggacggact ccactaccgt tctccactgg      4380
     ctacggtcgc cgcctaaccg ttggaaggca ttcgtagcca atcgagtgtc acaaatccag      4440
     cacatatcca atgtgagtcg ctggaaacat gttcctggcg tcgataaccc tgcagacgam      4500
     atttcaagag gactgcatcc gatcgatatc atccagtgta agcgctggtg gaatggtcct      4560
     gactggttgt cacttcctcc ggaatgctgg ccgagtctca ttccaaccga cgaagawaca      4620
     gaagccgcca ccgaagaaat gcgaaagatc ccgctggttt caatgggcgt cgtacagagc      4680
     gattttcacg acaatttgtt cgctcgctac tccagctttt ccaagcttcg tcgtgttact      4740
     gcgttctgct tgcgttatct ccgaaccttg caagaacgtg ccaagctacg ccttaaggat      4800
     ccagacaagt acagccaact caccttccgc gatcagccaa tcactccact caatactgga      4860
     gaattacaga gcgctgaact ggagctgtgt cgtctagcgc aacgtcagtc gttcgcwgaa      4920
     gagcwttctg atctggcaag cggagaattc gtcgccaaat cgtccgctwt gaagtggttg      4980
     aagccattca tcgatcaaga cggcattatt cgtgtcggtg gccggctgcg gaacgccgct      5040
     ctttccgact tcgtgaagca ccccatcgtg ctttctgcca aacaccagct gtcgactctg      5100
     ctggctagtt tctttcactt aaagctactg cacgcaggcc ctcaactcct gctagccaca      5160
     ctgcgccaga aatattggat tctcggcggc agaaatctct caaaatccgt ctttcaccat      5220
     tgccacactt gttttcgtag caagcccaca ctagtccagc agagcacagc agatctaccg      5280
     gcatcccgag tctcaccaac tcgcccgttc tccgtttgcg gagtcgatta ctgcggaccg      5340
     ttcttcatca aatcacccgt ccgtaatcgt gctcctacga aggcctacgt agcaatcttc      5400
     gtctgcttcg ctacgaaggc tgtgcacatc gagcttgtga gcgaccttac cacggcggcc      5460
     tttttggcag cacttcgccg ggtcgtcgcc cgcagaggaa gaatcgccga gctgcactcg      5520
     gacaatgcca caacctttaa gggtgcgtcg cacgcactca accgtgtcta ccgaatgctg      5580
     aaggtggaca acagtgatcg aaacagaatc ttcagctggt gctccgagaa cgagattcgg      5640
     tggaaattta tcccaccgcg agcaccacat ttcggaggtc tgtgggaggc cgctgtcaag      5700
     tcagcgaaga agcatctcct gaaaaccgtc ggtaacacca acatcgccta cgaaccgatg      5760
     gtcactctct tggctcaagt cgaaatgtgc ctgaactccc gtccgctaac gccgatgcca      5820
     agcgaaccgt cggatatgga ggtcctaact ccaggacact ttctcgtcgg agccaatctt      5880
     caagcggtac ccgaacctga tctgcgkgag attcccgaca accgtctgga gtcgtacgag      5940
     ctggtccaga aacacctgca gaacatctgg gctcgctggt atccggagta cctgcaacaa      6000
     ctgcagtcaa gagctaccaa gggctgcaaa ccaccggtcg ccgtcgaggt tgaccgcatc      6060
     gtmgtcatca aggaagacaa cgttcctccg gccagttggc cgctcggaag gatcgtcaag      6120
     cttcatccgg gcaaggatgg tgtcgtccga gtggtgacac tccggacagc accgggaaag      6180
     gacatcgttc gtgcggtagc gaagatcgct ctactgccat caccggatcc aaccatttaa      6240
     tcgttccagg tagagcaacc cgcaagggag aacttgctcg aagcgcaccc gcgcttagta      6300
     caggtaattg cgtttccaat acctctaagc tgaatcgttc gatctacctg ttcttctctt      6360
     tttttgttcc cggtctttgg cgaggatcta cgacggagcg atcatcatcc gtaccgatga      6420
     ccatctgtaa gccgattcaa tgaattcgtc caacgctgaa gtttggaaca cctccgtgtt      6480
     ccaaggtggc cggaa                                                       6495
//
ID   BEL-796_AA-LTR repbase;    DNA;    INV; 622 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-796_AA-I;
KW   BEL-796_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-622
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-622
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 107-107 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 622 BP; 151 A; 140 C; 157 G; 173 T; 1 other;
     tgttggagcc ggaaacatcc gtttaacgaa taagattgaa tttcattttt tgctatagtt        60
     cgtacccctt aagtacccca ttgccactca gcagtacagc gagagactgt twgaggagag       120
     cgcaaacatg cgcacaatag cccgcgtcca ccatctgtgg acaataggta gcaaactgat       180
     atattgtgtg aacctattgt atttgataca gtctgaaata gaaagttgaa cgaatcacac       240
     gttcggtcag tctgcgtcgg tttattctac gatcgagtga aaatatcaca agtcccccgt       300
     taccaaggga cttagccgtt ttttctgttg tgtggtagtg atttcggtcg atgcgatttt       360
     ttctaagtgc ccagttacca agggacttag ttggttttcg tgtcgtgtgc ctcggtccga       420
     ccttagtgaa aaggtggacg agctttagtg acctaccgtt gaagaaagcg tggtggtatt       480
     ccgggaccca agaggcttgt ggcgcccaag ccctcggtca gataattctc gcgtgtgttt       540
     tgccggactt caacactttt cggtggctgc caaaggcagc gaagaaagcc cttcgatacc       600
     gtgcatagtt cgcgctcgaa ca                                                622
//
ID   BEL-797_AA-I repbase;    DNA;    INV; 6364 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-797_;
KW   BEL-797_AA-I; BEL-797_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6364
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6364
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 259-259 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           601..5880
FT                 /product="BEL-797_AA-I_1p"
FT                 /translation="MSAVERKLRGLKNRKRSIITSVAAIRTFVASYQAETD
FT                 KCEVAVRLENLIDLWKEFNTVQTELETLEEDNEVLEAYLKERTEFERAYYR
FT                 VKGTLLQLHQPNYPTTAQNTAATAGDNSGQAHIKLPDIKLPVFSGDYESWL
FT                 NFHDLFMSLVHSSTSLSTIQKFYYLRSSLAGEALKLIQTIPISNDQYSVAW
FT                 NLLISHYQNPRRLKRTYVQSLFEFPSMKKETASELHTLIDKFQTNVRILKK
FT                 LGERTEHWDALLIHLLSSRLDSVTRRDWEEYAETNDTTKFQQLIDFLQRRV
FT                 NVLETVANKPSDLPAMSRKPNPPRAGYHGVVQQGFRQCPVCSGQHFLYQCE
FT                 SFTQLKTNEKEGIVRRNKLCRNCLRRGHMAKDCSSESNCRKCRGRHHTQLC
FT                 FVSKTPFTSQATTSQPATVNQPVTSSEPSVPSTSSGPMSSTPAAHTGISSC
FT                 ISSDGSRTKVLLATAVVILIDDRNCEHTVRALLDSGSECCFVTERVAQMMR
FT                 VRRNRVNLPIAGIGQASTEVRCKFQTTVKSRISNYSTTIEAFVLPRVTVDL
FT                 PSISVDTSNWTLPTGIQLADPSFYQSGAIDLVLGAEIFFDLFSVAGRIPLG
FT                 ESLPSLINSVFGWVISGRTLEGQPSSSIICNVATTADIHRNMERFWAIEDD
FT                 TAISYSPAEALCEKLFTETTVRNEDGRYMVHIPFKDDAIDKLGTNRRTALH
FT                 RFQLIEGRLGRDSDLAAEYRKFMDDYEKLGHMRRIDESELASGSAYFLPHH
FT                 PVIREDSSTTKVRVVFDASCKSNTGVSLNDVMHVGPVIQEDLRSITMRARL
FT                 HPIMLIADVAKMYRQIYLFPEDCRFHLIFWRNSPSEPVQIYKLQTVTYGTA
FT                 SAPYLATRILQKLADDEKENYPLAAKATCEDFYVDDFFSGATSVTDAVELR
FT                 RQMDAMFNSAGMQLRKWASNVPDALEGVANDNRAMQSSVDLDKDQSIKTLG
FT                 LHWEPNSDQLKYVVPEATIDPTVRITKRYTLSCIAKLFDPLGLVGPVVVSA
FT                 KIFMQKLWGLRDENGNQYDWDNELPDDMKIQWIDYHTELPRLNVLRIDRFV
FT                 VLPNATSVELHFFSDASISAYGSCVYIRSSNSSGDVKVSLLTSRSKVAPLK
FT                 QQSIPRLELCGALLSAELYEKVSSALRITSKAYFWVDSTTVLSWLKATPST
FT                 WSTFVGNRVSKIQHKTQNCEWNHVAGRENPADVISRGLPAADLIRCEKWWH
FT                 GPPWLQCDSGVWKIPVNESIDREAVKEARKSAHVVTSSVSTFAEDYINRFS
FT                 SYQQMLRMTAYWRRYFTNLRRPSPERTTSAPLSTTELREAELALIRLIQKD
FT                 AFSAEIRAIQAKQIVSSKSRLRWFNPILGFDGILRIGGRISRSINSYDSCH
FT                 QILLPGSHPFSTLLIRCYHERLFHAATQLLLNTLRLRFWILGGRNDTRRVV
FT                 HSCVKCFRAKPKAIEQFMAELPKQRVTASRPFSVVGIDFWGPIYLKPRHRR
FT                 DSPPKAYVAVFVCFSTKAVHLELVTDLSTNKFLQAFRRFVSRRGLCTDVFS
FT                 DNGKNFVGAANELRRLLRAESFRHSFASECSANGIRWHFNPPRGSHFGGLW
FT                 EAAINSAQKHFVRVLGDKKLPFDEMETFLVQIEACLNSRPLTKISDDPSDL
FT                 QALTPGHFLIGTSLQSVPDVDYESIPSNRLHLWQQLQKMLQDVWKRWHVEY
FT                 LQSLQPRSKWLKESVQLQVNQLVVIVDENQPPMRWPTARIHELHPGKDGVV
FT                 RVVTLQTATGLLTRPTSKICILPIPSESNNESATLADQGH"
XX
SQ   Sequence 6364 BP; 1749 A; 1553 C; 1441 G; 1621 T; 0 other;
     tggtccttcg agccggatgg gtgtcgagtg aattccaccc aagccagtaa caccgccatc        60
     aaactacgcg ccattccaat ctacgagtta ttgtggaaga atttcatggc gggaatcacc       120
     atcgatatgt agctgctggt gttttccaac tagaaaccat acaaggcatt cacaatgcct       180
     cactaaggtg agtgcggttt caattgctaa taaccctttg aatggttcta ccagatctgt       240
     tcttttttgt gcatgtttat tggatgagtc ttgctgcaat acgcacatac cgaattggac       300
     gaccggtagg aggttttaac catttggagc ttcactaaat cgacgacgcg tgagcccagg       360
     gtcggtcaat gccctttcag ccggtcgttg acctaatcac acactactac cttattggct       420
     ggcgccattg acatccatca actgagattg ttatacacaa cccaagagag gagccgattt       480
     ggattattat tacaaggcaa caaactgcct gtaatcaggt aattacggtt ccaacacatt       540
     tatcaatcgt tttgcggtct acgcggtctg ttgttttaga catcatcgtt ctcaatcacc       600
     atgtctgctg ttgagcgaaa gctgcgaggt ttgaaaaacc gcaaacgcag tatcatcacg       660
     tccgtcgctg cgattcggac attcgttgcg agctaccagg ctgaaaccga caaatgtgaa       720
     gttgctgtgc ggttggagaa tttgattgac ctgtggaagg agttcaacac agtccagaca       780
     gaattagaga cgttggagga ggataatgaa gtactggaag catatctcaa ggagcgaacg       840
     gagtttgagc gggcatacta ccgtgtaaag ggtacactac ttcagttgca tcaacctaat       900
     tatcccacca cggcccaaaa cactgctgcg actgctggtg acaattcagg ccaagcccac       960
     ataaaattgc cagacatcaa gcttccagta tttagcggag actacgaaag ctggttgaat      1020
     tttcatgatt tattcatgtc actcgtacat tcatcaacga gtttgtccac aatacaaaaa      1080
     ttttattatt taagatcgtc cttggctggc gaagcgctga agctaattca gaccattcca      1140
     atcagcaacg accagtattc agttgcatgg aatttactga ttagccatta ccagaaccct      1200
     cgtcgactaa agagaaccta tgttcagtcg ttattcgagt ttcccagcat gaaaaaggaa      1260
     actgcatcgg aattgcacac gttgatcgac aaatttcaaa ccaatgttag aatcctcaag      1320
     aagttgggcg aaaggacgga gcattgggat gcgttgctaa ttcatctgtt aagcagccgt      1380
     ttagattcag tgacgaggcg tgactgggaa gaatatgcgg aaacaaatga caccacgaag      1440
     tttcagcagt tgatagattt cctgcagcgc cgagtcaacg tgctagaaac ggtagccaac      1500
     aagccctcag acttaccagc gatgagcagg aagccgaacc caccgagagc tggatatcat      1560
     ggagtggtac agcaaggatt tcgccaatgt ccggtttgct caggccagca ttttctgtat      1620
     cagtgcgaat cgtttacgca attaaaaacc aacgagaaag aaggaatagt gcgacgaaat      1680
     aaactctgtc gaaattgttt acgccgtggt cacatggcga aggactgctc atctgagagc      1740
     aactgtcgca aatgcagagg tcgccaccat acacagctat gcttcgtttc caaaaccccc      1800
     ttcactagtc aggccactac tagtcaacca gctacggtaa atcaaccagt tacttctagt      1860
     gaacccagtg tgcctagtac ctccagcgga ccgatgtcat caacgccagc tgcacacacg      1920
     ggaatatcga gctgtatttc ttcagatggc tccaggacga aggtactttt ggcgactgcg      1980
     gtcgtaatcc tgatcgacga tcgcaattgc gaacacacag ttcgtgctct cctagattcg      2040
     ggcagcgaat gctgttttgt gacggaacga gtcgcacaaa tgatgagggt tcgaagaaac      2100
     cgtgtaaacc taccgattgc tgggatcggc caagcgtcta ccgaagttcg ttgcaaattt      2160
     caaaccactg tgaagtcgag gatcagtaat tactccacca ccatcgaggc attcgttttg      2220
     ccccgagtta cagtagatct tccgtccata tctgtcgata cttcgaattg gacattgcca      2280
     acggggattc aactggcaga cccatccttc tatcaatctg gagcaatcga tctggtgtta      2340
     ggagccgaaa ttttcttcga tctcttcagc gtagcgggtc ggattccttt gggcgaaagt      2400
     ctgccatccc tgataaattc ggtatttggt tgggtaataa gtggaaggac tcttgaaggc      2460
     caaccgagct cttccatcat atgcaatgtt gccacaacag ctgacattca tcggaatatg      2520
     gagcgctttt gggccattga ggacgataca gcaatatcct attcaccggc ggaagcctta      2580
     tgcgagaaac tcttcaccga aactacagtt cgcaacgaag atggccggta tatggtgcac      2640
     attcccttca aagacgacgc tatagacaaa ctgggtacga atcgacgaac agcgcttcat      2700
     cgattccaac tgatagaagg tcgactaggg cgagattccg atttggcagc tgaatatcgg      2760
     aaattcatgg atgactatga aaaactggga cacatgaggc gtatcgacga atcagaattg      2820
     gcatccgggt ctgcatattt ccttccgcat catcccgtca tccgcgaaga tagcagtacc      2880
     acaaaagtcc gcgttgtgtt tgatgcttca tgtaaaagca acacaggagt ttccttgaac      2940
     gatgtcatgc atgttgggcc ggtcatacaa gaggatttgc ggtcaattac catgagagct      3000
     cgcttgcatc caatcatgtt aatcgccgac gtagccaaaa tgtatcggca aatttatctt      3060
     ttccccgaag attgccgatt tcatttgatc ttctggcgta attcaccttc tgagccagtt      3120
     cagatctaca aattgcagac tgtaacttac ggaactgctt ctgctccata cttggctacc      3180
     agaattttac aaaagcttgc agacgacgag aaagaaaact acccgctggc agcaaaagca      3240
     acatgcgaag atttttatgt ggacgatttc ttttccggag caacatcagt caccgacgca      3300
     gtcgagctac ggaggcagat ggatgcaatg ttcaacagtg ctggaatgca gttacgcaaa      3360
     tgggccagca acgttccaga tgcactcgag ggagtggcaa atgataatcg tgccatgcaa      3420
     tcgtcagtgg acttggataa ggaccagtcc attaaaacct tgggtttgca ttgggagccc      3480
     aactctgacc aactcaaata tgtcgtgcct gaagcaacaa tagacccaac cgtacgtatt      3540
     acgaaacgct atactctgtc atgtatcgcc aaattgtttg acccactcgg tttggtgggt      3600
     cccgtggtcg tcagcgcgaa aatcttcatg cagaaattat ggggtctgcg agatgagaat      3660
     ggcaatcaat acgactggga caacgaattg ccagatgaca tgaaaataca atggatcgat      3720
     taccacacgg aactccctcg cctcaacgta ctgcgaattg atcgattcgt tgttcttccc      3780
     aacgctactt ctgtagaact acattttttc tccgatgcgt caatatctgc gtatggttcg      3840
     tgtgtttaca ttcgatcctc taactcctcc ggtgacgtca aggtttcact gctaacatct      3900
     cgctccaaag tagctccact taagcagcaa agcatcccac gactagagct ttgcggtgcc      3960
     ttgttgtctg ctgaattata tgagaaggtt tcttcagccc tgcgcatcac atcgaaggcg      4020
     tacttttggg tggattcaac cacagttttg agctggctca aggctacacc ttcaacatgg      4080
     tcaactttcg tcggaaatcg agtatcaaag attcagcaca aaactcagaa ttgcgaatgg      4140
     aaccatgtag ctggtcgaga gaatccagct gacgtcatct cacgaggact tccagcagcg      4200
     gacctaattc gatgtgaaaa atggtggcac ggacctcctt ggttacaatg tgatagcgga      4260
     gtctggaaaa tcccagtcaa cgaatcgatt gatcgagagg cagttaaaga agcaagaaag      4320
     tcagcgcatg tagttacgtc ttctgtttca accttcgccg aggactacat caacaggttc      4380
     tccagttatc aacaaatgct tcgcatgact gcttactggc ggcggtattt taccaattta      4440
     cggcggccaa gtccagagcg cactacctct gcgccgttgt ctacaacaga actacgagaa      4500
     gcggaattag cattgatacg cctcattcag aaagatgcgt tttcagcaga aataagggct      4560
     attcaagcaa agcagatagt ttcgtccaaa tctcgtctcc gatggttcaa cccgatccta      4620
     ggctttgatg gaattcttcg tattggtgga cgaatcagcc gctctatcaa ttcctacgac      4680
     tcttgccacc aaatcctact tccaggatcg catccgtttt ctacgcttct cattcgctgt      4740
     taccacgaac gtctctttca cgcagcaaca caactgcttt tgaatactct tcgcctacgg      4800
     ttttggattt tgggaggcag aaacgacaca cgccgtgttg ttcatagttg tgtaaaatgc      4860
     tttcgtgcaa aaccgaaggc aatcgagcag tttatggctg aattgccgaa acaaagagtt      4920
     accgcatcac gcccgttctc cgtcgttgga attgacttct ggggaccaat ttacctcaaa      4980
     cctcgccacc gtagagattc acctccaaag gcttacgtcg ctgtttttgt gtgctttagc      5040
     acaaaggccg ttcatttaga gctcgtcaca gatctgagca caaataaatt tctacaagct      5100
     tttcgtcgct tcgtctctcg ccgaggttta tgcacggatg ttttttccga taatggcaag      5160
     aacttcgttg gagcagccaa cgagcttcgt cgattattgc gcgcagaatc gttcaggcat      5220
     tcgttcgcca gtgaatgctc cgccaacgga attcgctggc actttaaccc accccgtgga      5280
     tcccattttg gcggattgtg ggaagcggca atcaactcgg cacaaaaaca ctttgttcga      5340
     gttctcggag ataaaaaact accatttgat gaaatggaaa cattccttgt ccaaatcgaa      5400
     gcctgtttaa actcacgccc attaacgaag atctccgatg atccatcgga ccttcaggct      5460
     ctcactccgg gccacttcct aatcggaacc tcgcttcaat ccgtcccaga tgtcgactat      5520
     gagtcgattc catccaaccg ccttcacctc tggcagcaac tgcagaaaat gctacaagat      5580
     gtttggaagc gctggcatgt agagtatctg caatctctac aacctcgaag caagtggctg      5640
     aaagaatcag ttcaactaca agttaatcag ctcgtcgtca tcgttgatga aaaccagcca      5700
     ccaatgcgct ggcccactgc tcgtatccac gaacttcatc cagggaagga cggcgtggta      5760
     cgagttgtta ccttacagac tgcaacagga ttactcactc gacctacaag caagatttgc      5820
     attctaccca tcccatctga aagcaacaac gaatcagcta cattggccga tcagggccac      5880
     tgaagggcta ggggtttcca aaaggatcaa ccaagccaag tatcaaccaa gaagaccatt      5940
     aggcatatca tctttacgtt gggaatgaca gttatacaag gccctttgtt tgaagggtcc      6000
     aggtaaggac ctttccaata cactctactt ttagaagccc gctactgggt ctattaattt      6060
     tccatgttct aacatgagct caacggttgc aatggaattc aacggagttc aacgcgagtg      6120
     acaatacgga ctacaagtcg ttacaacttc aagcttggag acttcaaccg gaaggagtaa      6180
     ctgaataatg catatgtaat gcaaggccct caatccggag ggtccaggtg aggacctgtc      6240
     caaccattta acatccttta gaaagtccta ccggatctta tattttcatg tcggatatcg      6300
     tcgagccttg aatgcaacta cagtctagat tctacagaaa tggttatttc tgccggggcc      6360
     agga                                                                   6364
//
ID   BEL-797_AA-LTR repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-797_AA-I;
KW   BEL-797_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-498
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-498
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 108-108 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 498 BP; 154 A; 103 C; 99 G; 142 T; 0 other;
     tgttcggtat caatccacca cgctatcaaa atcatctcta tcggtcactc attctctgag        60
     ccaacagcta ccactacaca gattctacca gccttgaaga cgaataggag atgtagcatc       120
     acataccagg ctgagtggaa agtcagtaga ctatcgacca ttcgacgggc agcatgaccc       180
     catactcgcg cggccgatcc gcaaggcctt aaataggtag aattttaatc tgtttgtgtt       240
     tatttatgtc gcgtagtttt taagaagatt tagactaagt aaattaataa aagttaagtg       300
     tttatgtggt ttttaaattc aaataaacgg tattgtcagt tatggtgaaa ttgtgaacct       360
     ttgttttacg tgtttaagaa gaaactgtac tctgtcatga agcgaagctg cccagaacga       420
     gaacaagcaa agagctcata tattctgctg ccggactgaa ccaaatttct gcccacaatc       480
     ttcgattagt acgaaaca                                                     498
//
ID   BEL-798_AA-I repbase;    DNA;    INV; 5997 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-798_;
KW   BEL-798_AA-I; BEL-798_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5997
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5997
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 260-260 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..5995
FT                 /product="BEL-798_AA-I_1p"
FT                 /translation="MQGASGKNKHCKRCNRPDEAEDMVCCDACDAWEHYGC
FT                 AGVSGSIAGSDRSWICEECRRKLLAAADSNSAPSTYTSTSSKKSRQIQLRL
FT                 DLLEQQNQIRIRKLEEQEKFLKEKYEMLMLLEEEEAPSNRSRVSARSKRDR
FT                 LENWLNNEDNENSAGEYEATHTVMPESGVQEQNVLAAVVGLSLTNPALETQ
FT                 SVSRKLEAPVMFELKPVSNPTPLKITSHAESSLVPSSSKATRLEEPRQQYI
FT                 SSVQTIRPSASVSKPSRTLVQERTNDAIASLRKVSHEDSQQTCKYRLPTGP
FT                 VEPDIAQFGQSSEGFAPTQPMPVLNQDLWHNQRNSYVDPVLPCPTASQLAA
FT                 RQVMARDLPVFSGDPEDWPIFYSSFKNSTAICGYSDAENLARLQRSLKGNA
FT                 LDTVRSRLLIPSAVASVIDTLRMLFGRPEILLNSLLRRVRSSPAPKADNLK
FT                 SIVDYGLSVQXLIDHMVMSEQQTHLTNPLLLNELVEKLPTHFKLQWSSFKQ
FT                 TQADVNLVTFNSFMSNLVSLASDLLVTSEAYYGSTKGYRPDKHKEKLFVHS
FT                 NDQSDEANDETTERNQERSIKGCNYCEDESHQISNCHEFRLLSVDARWKTV
FT                 RSKNLCRTCLVPHRKWPCRSKKECGLENCRSRHHPMLHAQHTQHEQIQPQV
FT                 DANVQAHQNHHGCHSASLFRYLPVKLFANGRTVTIFAFLDEGSSSTLLEAE
FT                 VAAQLGLDGPSASFWLTWTGNIKREEKGSKSVSLTIAGENSKQKYAIDNIL
FT                 TVEDLHLPKQSFNYESLVDQYPHLKGIPLQSYSNVAPRMIIGLEHVRLLTA
FT                 LKIHEGTNEGPVVVKTRLGWCVFGKESNNAQLVHLNHHVQETMTNQSLHEA
FT                 MRSYFAVEESAVTVKPEADEDKRAVQILERTTIKRGCRYETGLLWRVDSPS
FT                 FPDSLPMAKSRLKSLERRLARDPELAKNVQQQIESYIAKGYAHKASLEELQ
FT                 DADPRHVWYLPLGVVVNPRKAGKIRLIWDAAAKVQGISFNDLLLKGPDMLV
FT                 SLVAVVLRFRERNIAVCGDICEMFHQIEIRLDDKQYQRFLWRSDPNSEIEV
FT                 YVMDVATFGATCSPCSAQYIKNVNAEAHAAMYPRAASAITKNHYVDDLLDS
FT                 TDTVEEAIELVNQVKIIHSAAGFKIRKFRSNSPEVLLAIGESEELSGKPIN
FT                 CDKQIIGDRVLGLLWDPAEDVFTFDASSLNSQQLLNGNVIPTKRQVLQLIM
FT                 RIFDPLGFVSHFTIHGKILMQEIWRAGTNWDEPIAENLLDAWYRWSELLAH
FT                 IGEIRIPRCYFADFPSNTLQQLQVHIFVDASESAYACVAYLRIDCSGGRRC
FT                 AFVASKTKVAPLKPLSIPRMELQAAMIGARLMQSLCSSLSLXIXKRCLWTD
FT                 SSTVLAWLRSDSRKYHQFVGFRVGEILSLTTLEEWKYVPSDLNVADEATKW
FT                 SSGPTFDNNNRWFSGPGFLIEDENEWPEELRGSSKSITSEELRPAFLHRCS
FT                 IMVPLVDVTRFSNWKRLVRTVAYVHRAVSILRQKIPAGERGSPLKGTEILT
FT                 AEFTLLRQAQAEAYPDEIAALINHEPVITSSPLYRLNPFMDTCGLIRMGSR
FT                 IEAAPEAPYSAKYPVVLPKQHSITTLVTDSFHRRLLHGNHETVHNEMRQQY
FT                 YISGLRSLIRKVSRNCQFCKIRNATPKPPMMAPLPKVRLTPFVRAFTFVGV
FT                 DYFGPVEVKIGRSLVKRWVALFTCLTVRAIHLEVTHSLSAQSCVMAFRRFI
FT                 ARRGAPREVYSDNGTNFVGANRQLTEEQQKMQQINHECASTFTNAHTTWHF
FT                 NVPAAPHMGGPWERLVRSVKSAMKVISDSTPHPSDEMLETILLEAEGVINS
FT                 RPLTYVPLDQADSESLTPNHFLLYGSTGITQPEIAFVDKSSGLRDIHKATQ
FT                 RVVDKFWARWVVEYLPMLTRRTKWFEKVKPLEPGDLVVIIDERTRNSWTRG
FT                 RILETITGANGQVRRAKVLTANGIVSRPAVKLALLDVNSEKTNNTDSYSGT
FT                 PGAHGLE"
XX
SQ   Sequence 5997 BP; 1708 A; 1410 C; 1476 G; 1398 T; 5 other;
     aactacaaag attttcaacc ctgtagtagg agtgaaaaca ttaggaagga tgcaaggtgc        60
     atctggaaaa aacaagcatt gcaaaaggtg caataggccg gacgaagccg aagacatggt       120
     ctgttgcgat gcttgcgatg cttgggaaca ctacggatgt gctggtgtat ccggttcgat       180
     tgctggctcg gaccgttcat ggatatgtga agagtgtcgg agaaaattac tagctgcggc       240
     cgactcgaac tcggcaccat cgacgtacac atccacatcc agtaagaagt ctaggcaaat       300
     ccagcttcgg ttggatctac tagagcagca aaaccaaatc aggataagga agctagagga       360
     acaagagaag tttttgaagg aaaagtatga aatgctaatg ctgctagaag aagaagaggc       420
     acctagcaac agaagtagag taagtgcaag atccaaacgc gacagattgg aaaactggct       480
     gaacaacgaa gataacgaaa attccgccgg cgagtacgag gctacacaca ctgttatgcc       540
     agaaagcgga gtccaagaac aaaatgtgct ggccgccgtc gtcgggctat cattgacaaa       600
     tcctgccttg gaaacgcagt cagtttcaag gaagttggaa gctcccgtca tgtttgagtt       660
     gaaaccagtt tctaatccga ctccgctgaa gattacatct catgctgaat ccagcttggt       720
     tccttcgtct tcaaaagcaa cacggcttga agaacccagg cagcaataca tttcctcagt       780
     acaaacaatc agacccagtg cgtctgtcag caagccttcc agaactctcg tgcaagaacg       840
     aacgaatgac gctattgcct cgttgcgaaa ggtatcgcac gaagatagcc agcaaacgtg       900
     taagtatcgc ttgccaaccg gtcctgtgga acccgacatc gcgcagttcg gtcagtcatc       960
     agagggcttc gcaccaacac aaccgatgcc tgtattgaac caagacttat ggcacaacca      1020
     aaggaattcc tacgttgatc cagtattgcc ttgccccaca gcatctcaac tcgccgctag      1080
     acaagtcatg gcacgagact tgcctgtttt ctccggtgac ccggaagatt ggcccatttt      1140
     ttatagtagc ttcaaaaact ctactgcgat ttgtggctat agcgacgccg agaatttggc      1200
     aagactacaa cggagcctta aggggaatgc cctcgataca gtacgaagtc gtctgctgat      1260
     accttcggca gttgccagtg taatagacac tctccgwatg ctattcggga gacccgagat      1320
     tcttctcaac tcactcctca gacgtgttcg atcctcgccg gctccgaaag ctgacaactt      1380
     gaaatcgata gtggactatg gattgtcagt tcagwacttg attgatcaca tggttatgtc      1440
     ggaacagcaa acccatttga caaacccgct actcctcaac gagcttgtgg agaagttacc      1500
     wacgcacttc aaactacagt ggagcagttt taaacagaca caggcagacg tcaatttggt      1560
     aacattcaat tctttcatgt cgaatcttgt ctctctggca tcggatttgc ttgtaacctc      1620
     ggaagcgtat tatggaagta caaagggata tcgtccggac aaacataaag agaagctgtt      1680
     tgttcactct aacgatcagt cggacgaagc gaatgacgaa accacagaac gaaatcaaga      1740
     gcgctcaatt aaaggatgca actattgcga agatgagagt caccaaatct cgaattgtca      1800
     tgaatttcgt ttactgtctg ttgacgctcg ctggaagact gttcgatcga agaatttgtg      1860
     cagaacatgt ctagtgcctc accggaaatg gccttgtcgg tcgaagaagg aatgtggtct      1920
     ggagaattgt cgatcgcgtc accatcctat gttacatgcg cagcatacac aacacgagca      1980
     gatacaaccg caagttgatg ccaacgtgca agctcaccaa aatcaccacg gatgtcattc      2040
     agcctcgtta ttccgttacc ttcccgtgaa gctattcgct aatggtagaa ccgtcaccat      2100
     ttttgcgttt ctggatgaag gttctagctc cacgcttctc gaggctgaag tcgctgcaca      2160
     gttagggctc gatggaccat cagcatcctt ttggttaacc tggaccggca atatcaagag      2220
     ggaagaaaaa ggttcaaaga gcgttagtct aaccatcgct ggcgagaact cgaaacaaaa      2280
     atatgccatc gacaacattc taacggtcga agatctgcat ctaccgaagc aatcattcaa      2340
     ttacgaaagc ctagtggacc agtacccgca tcttaaagga atacctcttc agagctactc      2400
     aaacgtagct cctcggatga tcattggttt ggagcacgtg cgtctgctta ccgctttgaa      2460
     gatacatgaa ggaacgaatg aagggccagt cgtcgtcaaa accaggctag ggtggtgcgt      2520
     gttcggaaag gagtccaata atgcacagct cgttcacctg aatcatcatg ttcaagaaac      2580
     catgacgaat cagtcgttgc acgaagcaat gagaagctat tttgcggttg aagaaagtgc      2640
     ggtgacggtt aaaccggagg ccgatgaaga caaacgtgca gttcagattt tggagcgaac      2700
     aacgatcaag agaggctgtc ggtacgaaac cggcctcttg tggcgggtcg atagcccatc      2760
     gtttcctgat agtctcccga tggcgaaaag ccgtttgaaa agcctcgaaa gacgcttggc      2820
     gcgtgatcct gagctggcga agaatgtaca acaacagatc gagagctaca ttgcaaaggg      2880
     ttatgcacac aaagcttcat tggaggaact acaggacgca gatccacgac acgtgtggta      2940
     ccttccatta ggagtagtag tcaatcccag aaaggccgga aaaatccgac tcatttggga      3000
     cgcagcggca aaggtacaag gaatcagctt caatgatctc cttctcaagg ggccagacat      3060
     gctggtttcg ttggtggcag tagttcttcg atttcgagaa aggaacatcg cagtttgtgg      3120
     tgacatctgc gaaatgttcc accaaatcga aatacgattg gatgataagc agtatcagcg      3180
     gttcctgtgg cgcagtgatc caaatagcga aatcgaggtc tacgttatgg atgtcgccac      3240
     attcggtgct acttgttcac cctgctcggc gcagtacata aaaaatgtga acgccgaagc      3300
     acacgctgcg atgtatccac gagctgccag cgctatcacg aaaaaccatt acgttgatga      3360
     tcttctcgat agtaccgata cggtagagga ggccatagaa ctcgtgaacc aagtaaagat      3420
     cattcattct gccgccggtt tcaaaatccg gaaatttaga tcaaattcac cggaagttct      3480
     cttggccata ggagaatcgg aagagttgtc aggcaaaccg attaactgcg acaagcaaat      3540
     catcggtgat cgtgttctag gattgctttg ggatccagca gaggacgtat tcacgtttga      3600
     tgcttccagc ctaaatagtc agcagctact caacggtaat gtgatcccca ccaagagaca      3660
     agtgctccag ctcataatga ggatatttga cccattagga tttgtatccc acttcactat      3720
     tcacggaaaa atcctaatgc aggagatttg gagggcagga acgaattggg atgagccgat      3780
     tgccgaaaac cttcttgatg catggtatcg gtggtcagag ctgctggcac acataggaga      3840
     gatacgtata ccaaggtgct acttcgcaga ctttccatcg aacacactac aacagctgca      3900
     agttcacata ttcgtggacg cgagtgaatc cgcctacgct tgcgtggcat atttgagaat      3960
     agactgctct ggcgggagga gatgtgcatt tgtggcctcg aaaactaaag tagctcctct      4020
     aaaacccctt tctatcccga gaatggagct gcaggccgcg atgatcggag cacgcttaat      4080
     gcaatcatta tgctcttctt tgagcctgsc aatcwtcaaa agatgcctct ggacggattc      4140
     atccaccgtg ctagcttggc ttcgttcaga cagccgaaaa taccaccagt ttgttggatt      4200
     tcgcgtgggt gaaatacttt cactaaccac cctcgaagaa tggaagtacg taccatctga      4260
     tttaaatgtc gcggacgaag caacgaagtg gtcgtccggc ccaacattcg acaacaacaa      4320
     tcgttggttt tccggacccg gatttcttat cgaggatgaa aatgaatggc ccgaggaatt      4380
     gcgtggatct tcgaagagca tcaccagcga agagctacgt cctgcgtttt tgcatcggtg      4440
     cagtataatg gttccattgg tggatgttac ccgtttttcc aattggaaac gtctggtcag      4500
     gactgtagcg tacgttcatc gtgcggtgag tatcttacgg caaaaaattc cagctggcga      4560
     gagaggatcg ccactaaagg gtaccgagat cctgacggcc gaattcactt tgctacgaca      4620
     agcccaggcc gaggcgtatc ctgatgaaat agcagctcta atcaatcacg aacctgtcat      4680
     cacatctagc cctctataca gactgaatcc gttcatggac acttgtggtc tcatccgtat      4740
     ggggagtaga atcgaagcgg ctccagaagc accgtattct gctaaatatc ctgtggtact      4800
     gcccaaacaa cattcaatca ccacgctcgt aactgacagc ttccatcgac gcctactaca      4860
     cggaaatcat gaaacagtcc ataacgaaat gcgccagcaa tattacatct ctggtctgcg      4920
     tagcttgatt agaaaggtgt cacgaaactg ccaattttgc aaaataagaa acgccactcc      4980
     aaagccgccg atgatggcac ctctgccgaa agttaggctt acacccttcg tgcgcgcatt      5040
     tacctttgtt ggggttgatt attttggccc tgttgaagtg aaaataggac gaagcttggt      5100
     aaaacggtgg gtagctctat tcacttgtct tactgtaagg gctatccacc tagaagttac      5160
     tcacagtcta tcagcacagt cctgcgtaat ggcctttcgg agatttattg cgcggcgtgg      5220
     tgctccacgc gaggtatatt cggataatgg cacgaatttc gtgggcgcca accgccagct      5280
     gacagaagaa caacagaaga tgcaacagat caatcacgag tgtgcttcaa ctttcactaa      5340
     cgcacatacc acttggcact ttaacgttcc ggcagccccc cacatgggtg gaccgtggga      5400
     gcggctagta aggtcggtta aatcggcgat gaaagtaatc tcggacagca cgccgcatcc      5460
     tagtgacgag atgctcgaga caatactact cgaagcggaa ggagtaatca actcgcgacc      5520
     cttaacatac gtccctttgg atcaagcaga tagtgaatcc ttgactccaa atcatttttt      5580
     attgtacggg tccaccggga taactcaacc agaaatcgct ttcgtagaca aaagtagcgg      5640
     attgcgtgat atccacaaag ctacacaaag ggttgtagac aagttctggg ctaggtgggt      5700
     ggtagaatac ttacctatgc taacgcgacg cacaaaatgg ttcgaaaagg ttaaaccact      5760
     cgaaccaggt gacttggtgg taatcattga tgagagaacg agaaatagct ggactagagg      5820
     gcggattttg gagacgatta ctggagcgaa cggccaggtt aggagggcta aggtgctaac      5880
     cgccaatgga atcgtttcta ggccggctgt taagctggcg cttttggatg taaattcaga      5940
     aaagaccaac aatacggata gctactcggg gactccagga gctcacgggt tggagga         5997
//
ID   BEL-798_AA-LTR repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-798_AA-I;
KW   BEL-798_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-432
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-432
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 109-109 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 432 BP; 151 A; 74 C; 84 G; 123 T; 0 other;
     tgttgccgaa ctcacagggc acaaaagtga tgctactgtc aagtcccccg aacgcgggta        60
     gatcgaggaa taacaagaag cgtgcatgcg gatgaaaagg ccgccctgta gctaaatcac       120
     aatttagata aagtttgaat cagaaatcat tggattatac gtttagttga ttagttttcg       180
     gtaaagcaat gaaatgaatt cggagaatat gttcgatact tattttttta cttctttaaa       240
     atcacttaga tcaaacttgt ttggacgcag aaaacataac ctcaatgtca aaagaattcg       300
     aaagtcactg aaaatgtaag agtaaaaatg aaggttctgt aagtaattgc taacatttct       360
     ttaataaaat ttcagctttg tagctgccgt acaagcaact aacaaatcgg tgtcctttcg       420
     aatatcgcaa ca                                                           432
//
ID   BEL-799_AA-I repbase;    DNA;    INV; 5974 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-799_;
KW   BEL-799_AA-I; BEL-799_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5974
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5974
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           600..5927
FT                 /product="BEL-799_AA-I_1p"
FT                 /translation="MATKLKGLNRRRANILNAAELIGTFDEDYVIAQANQL
FT                 PFRIQHLDDLWREFNEVQDQIEELEDTEPTEQNFKEERSSFQTFYFTLKAS
FT                 LSSKIPASSVPSTSSNRLSPTPLAQTVPNLRLPEIKLKEFSGHFEEWESFS
FT                 DLFVSLIHSNYQLSHVQKLYYLRASVTGEAARIIAPLEITANNYLVAWKLL
FT                 KDRFENKSMLIKRHMSGLLLISPLKRESSSALLDLADEFDRHVQHLDKLEG
FT                 AEDHWNSFLVERLSSCLDQASLREWETQTADEAKPTYKQILEFIRKRSRIL
FT                 QTLMLSQPHFASQTDNKPRRTSSTHVSALASSKCICCEQPHLLFQCERFQS
FT                 LTPIERFDLVKKFGLCINCLKGSHLVKDCSSGACKTCGRKHHSMLHLTSPT
FT                 LNTTRLSHLVQGSVAELSQAHSERPPFGSVQSSRTEELPVASPLAPSFRES
FT                 SYSVGCIPSPSSVETFHLNSPPYAAQSSELIPKQAYSMVLLSTAVIKVLDA
FT                 DNKFHFARALLDSGSQPSFISEALCQRLNLKRAKLNSPVSGIGQSKVNVRF
FT                 GVTILIASRFGNFESNLDCLVLPKLTVALPSCHIDVTRWQIPSHLPLADPQ
FT                 FNVSQGVDIIIGAELFCSLLENQQIRLNANYPILQKTVLGFIVSGKITDKV
FT                 KSDAFVSSHMCTDESLDSQLERFWELENMDQKKSLTPDEQFAEDHFQRTFS
FT                 RDTNGRYIVRLPLREELVSLMGDSYTPALRRFLSMEKKLATDSQLRQEYTA
FT                 VMLEYQKLEHMEVSPRAFPGPQFFLPHHAIRRPESTTTKTRVVFDGSSRGI
FT                 NGLSINEALIAGPTVQPSLQATVINFRMPRFVFTADAQKMFQQIWVHPDDR
FT                 KFQQTLWRNDSSEPVRVYQMNTVMYGLASSPFLATRVLEQLAIDDGQQYPL
FT                 AVPVIRKGTYIDDVLAGHDDLHIAQETCQQLIQLLGEGGFILRKWAANDCA
FT                 VLKMVPSEVRETASKLELDRSTAVKTLGLLWLPKSDKFMFKIPPLTDSTAI
FT                 TKRVVVSEMSRLFDPVGLLGPVVLTAKIFVQSLWAERLPWDAGLSREQNMW
FT                 WLAYRTDLQQLSHLQVPRRVLSNAQKHYSMHCFCDASMKGYGCCIYVVSPD
FT                 ESGELRSHLLASKSRVAPLRGQTVPRLELCAALLGSQLVDNLRKTTNFTEP
FT                 VTMWSDSTIVLYWLQSRSNSWKVFVSNRIAEIQRLTKDFEWRHIPTELNPA
FT                 DRISRGAMASEIIEDKLWWNGPEFLQTTRDNWPDTRFSIPEDRLVTDEARC
FT                 TIACLANQIEPDIFDYYSELAKLLKCVAYCYRFYNNCKLSKEQRSTGALSP
FT                 EEIDHALKLLARVVQRLSFPIEVKIYNRQKDSSISPNIGSKSALRNLNLIM
FT                 DEFGLLRVDGRLRYMNAPYDSRFPILLPSNHKFTMMIARAIHLKTLHGGPS
FT                 ILLATLRQRFWPLRGRDVARAVVRRCITCFRCRPKPYSQIMAPLPEVRIKP
FT                 ARPFLYSGMDYCGPFFVRPLTGRGASVKMYVSLFVCLVVKAVHLEVVADLS
FT                 TASCINAVKRVVARRGRIVEIHCDNATAFVGADRDLAMSRNEFLQQFKGDE
FT                 WRHYCLDNGIKFQFIPARSPHFGGIWEAGIKSFKHHFRRIMGLKAFTLDQF
FT                 HTVVTQVEAILNSRPLSPMTDLPDDLAALTPGHFLVGEPLVAIPEPDLDQI
FT                 NPGRLNRLQDMKKTVQDLWKRWSRDYVSQLHQRPKWKQQQSNIQPGQLVLL
FT                 KEQTPPLHWPLARVVEAIPGKDGFVRVIVVQTPHGRYKRAVSEVSVLPIDE
FT                 EKIEG"
XX
SQ   Sequence 5974 BP; 1572 A; 1405 C; 1341 G; 1656 T; 0 other;
     ttttttggtg ccgaaacccg ggacttttcg ttctttgatc taaatcggtg gtgcgtgtat        60
     caaccgtgtc gacgcgcgca tcatatttct ttcgatggag ccgtccatga cggtactaac       120
     tgcattcgat ttgtgtgaaa cgtgcttttc aatagcaacc acgttgctaa gctattgttc       180
     gttgcgcatt gtgaccaagt ctattgagaa ccattgtgag gaggcaatca cgttgctcgt       240
     cattttttgt agatagaagc tgaaactact caaacgaact gtgctctagt gaaaatatag       300
     atccgagaaa aaaaaaaata acggaaaagt gttcgtagtt taaaagtggt tggtgctatc       360
     ggccgagtta aacgtcgctg tgacaaccaa aggcgtgctg tcgttcgttg gtgctacctg       420
     tggcgagttg gttggtgcta cccgtcattc accgaagctg gtcgtcacca tcgtcgagct       480
     gataacgatt ctttctttcg ctgaactctt cttgttcatc tgtgtcatca ttacggcaag       540
     taggccgtta ccaggtaaca aattttcaat tatacatact ggccaactac gaaggcgtga       600
     tggcaaccaa actaaagggt ttgaaccgcc gtcgagcaaa tatattaaat gcagctgagc       660
     tcattggaac attcgatgag gactacgtta ttgctcaagc aaatcagctt ccctttcgaa       720
     ttcaacattt agacgaccta tggcgtgagt tcaatgaggt tcaagatcaa attgaagagc       780
     tggaagacac ggaacctacc gagcaaaact tcaaggaaga acgtagcagt ttccaaactt       840
     tctatttcac gctaaaggct tcgctttcta gtaaaattcc ggcttcgtct gtaccgtcta       900
     cctcgtctaa cagactttcg ccgacaccat tagctcaaac ggttcccaat ttacgtttac       960
     cggaaataaa gttaaaagaa ttttcgggtc actttgaaga atgggagtcc tttagcgatc      1020
     tatttgtgtc tctgattcat tcaaattatc agctttcaca cgtgcaaaag ctttattatt      1080
     tgcgtgcctc cgttactggc gaagcagctc gcataattgc acctctcgaa ataactgcga      1140
     acaattattt ggtcgcatgg aaactgttga aagatcgctt cgaaaacaag tccatgctta      1200
     taaaacgtca catgtcagga ttgctcttga tttcccctct taaaagggaa tcatcttcgg      1260
     ccctattgga tttggctgac gagtttgatc gacatgtcca acatctagat aagcttgaag      1320
     gagccgaaga ccattggaac tcgtttttgg tcgagcgcct tagtagctgt ttggatcaag      1380
     cctctctacg tgaatgggaa actcagacag cagatgaagc caagcctact tacaaacaaa      1440
     ttttggaatt tatccggaag cgttcacgta tactgcaaac cttaatgctc tcccaacccc      1500
     actttgcgtc ccaaacggac aacaaaccga gacgtacgtc ttcaacccac gtaagcgcct      1560
     tggcatcatc caagtgcatt tgttgtgagc aaccacactt gctgttccaa tgcgaaaggt      1620
     ttcaatctct caccccaatc gagcgatttg atctggtaaa gaagttcggc ctttgcataa      1680
     actgtttgaa aggctcccat ctggtgaagg actgttccag tggcgcttgc aaaacttgcg      1740
     gaaggaagca tcattccatg ctgcacttga catcaccaac actgaatacc acccgtcttt      1800
     cgcatctggt acaaggctct gttgctgaac tgagccaagc acactcggaa cgtccgccgt      1860
     tcggttcggt acaaagctct cggacggaag agcttccggt tgcctcacca ctcgcgccgt      1920
     catttcgtga atcgtcatat tcggtcggtt gcattccttc cccgtcgtcg gtagaaacgt      1980
     tccatctcaa ctcacctcca tatgctgctc aaagctctga actaatccct aaacaagcgt      2040
     attccatggt actcctgtct actgccgtta taaaggttct agatgcagat aacaaattcc      2100
     acttcgcccg agccctgttg gacagcggtt cccaaccaag ctttatttcg gaggcactat      2160
     gtcaaaggtt gaacttgaaa cgagcaaaat tgaattcccc ggtcagtggt attggacaat      2220
     ctaaggttaa cgttcgcttt ggtgtgacca tactaatcgc ctcacgtttc gggaatttcg      2280
     aatctaatct cgattgcctc gtattgccga agcttacggt cgcattaccc agttgtcaca      2340
     tagatgtcac acgttggcag ataccgagcc atctccctct tgccgacccg caattcaatg      2400
     tcagtcaagg ggtggacatt ataatcggtg ctgagctttt ctgctctctt ctagaaaatc      2460
     agcaaatcag actaaatgcg aactatccca tccttcaaaa aaccgtttta gggtttattg      2520
     tttctgggaa aataacagat aaagttaaat ctgatgcctt tgtgtccagt catatgtgta      2580
     ctgatgagtc gctcgattct caacttgaac gattttggga acttgaaaat atggaccaga      2640
     agaaatcgct cacaccagac gagcaatttg ctgaagacca ctttcagcgt accttctcga      2700
     gagatactaa tggacgttat atcgttcgtt tgccactgcg agaggagtta gtttcattaa      2760
     tgggagattc ttacacacca gcgcttcgtc gattcctttc gatggagaaa aaattggcta      2820
     cagatagtca gcttcgtcaa gaatacacgg cagtaatgct tgaatatcag aagctagagc      2880
     acatggaggt aagtccgcgc gcgtttcccg gcccacagtt ttttctccct catcatgcaa      2940
     ttcgccgccc ggagagtaca accacgaaga ctcgagtagt atttgatggg tctagccggg      3000
     gtatcaatgg tttgtcgatc aatgaagccc ttatagctgg tccaacagtg cagccatcgt      3060
     tgcaagccac tgtcataaat tttcgcatgc cacgcttcgt tttcactgct gatgcacaaa      3120
     agatgttcca gcagatttgg gtccaccccg acgatcgaaa attccagcaa acactatgga      3180
     gaaacgattc ttcggagcct gttcgtgttt accagatgaa tacggttatg tatggattgg      3240
     caagttcacc gtttcttgct acaagagttc ttgagcaatt agctattgat gatggtcaac      3300
     aataccctct tgcagtaccg gtgattagga aaggaactta cattgacgat gttctggcag      3360
     gacacgacga tctgcacatt gcacaggaaa cctgccaaca gttgatccag ttactcggag      3420
     aaggtggttt cattttgcga aaatgggcag ctaacgattg cgctgttctt aaaatggttc      3480
     cgtcggaagt tcgagaaact gctagcaaac tcgaacttga tcgttcaaca gctgttaaaa      3540
     cattgggtct cttgtggctt ccaaagtctg acaaattcat gtttaagatc ccacctctta      3600
     ccgactctac agcaatcacg aaacgcgtag ttgtgtcaga aatgtctcgc ttattcgatc      3660
     ctgtggggct tctcgggcct gttgtactca cagccaaaat atttgtgcaa tctttgtggg      3720
     cagaacgatt accatgggat gcggggctct cccgtgaaca aaacatgtgg tggttggcat      3780
     atcgtactga tcttcagcag ctatcgcatc tacaagtacc acgaagagtt ttatcaaacg      3840
     ctcaaaagca ctatagtatg cattgcttct gtgatgcttc gatgaaggga tatggatgtt      3900
     gcatttatgt tgtttcgcct gatgaaagtg gggagcttcg tagccatcta cttgcctcaa      3960
     aatctcgtgt ggcaccattg cgtggtcaaa cggtcccccg cttggaactt tgcgctgcac      4020
     ttcttggcag ccagcttgtt gacaaccttc gtaagaccac caacttcact gagcctgtca      4080
     cgatgtggag tgatagtact attgtgctat actggttgca atcaaggagt aactcatgga      4140
     aggtttttgt ttctaatcga attgctgaaa tacagcgatt gactaaggat tttgaatgga      4200
     gacatattcc tacggagctg aatcccgctg atcggatctc tcgaggagct atggccagcg      4260
     agatcattga agataagtta tggtggaatg ggcctgagtt tttgcaaacc actagggata      4320
     actggccaga cacacgtttc tcaattccgg aggatcgtct cgtcactgac gaagctcgat      4380
     gtactatcgc ctgccttgca aatcaaattg agcctgatat tttcgattac tactcggaac      4440
     tcgccaaact attgaaatgt gtggcttact gttatcgatt ctacaataat tgcaaattat      4500
     caaaagagca gagatcaacc ggagcattat cgccggagga aattgaccat gctttgaaat      4560
     tgttagcacg tgtcgttcaa agattaagtt ttccaataga agtaaaaata tacaatcgtc      4620
     agaaggattc atctatatcg ccgaatattg gttcaaaatc tgcccttcgt aacttgaatc      4680
     taattatgga tgaatttgga ttattacgcg tcgatggccg gctacgctac atgaatgctc      4740
     catacgattc ccgctttcca atcttactac catccaatca caagtttact atgatgattg      4800
     cgcgagctat tcacctcaaa acgttacatg gtgggccgtc aatcttactt gctaccctgc      4860
     gtcaacgttt ttggccactc cgaggtcgag atgtagctcg agcagtagtt cgtcgatgta      4920
     tcacctgctt tcgatgtcgg ccgaagccgt attctcaaat catggctcct ctaccagagg      4980
     ttcgtataaa accagctagg ccattccttt attcgggaat ggattactgt gggccgttct      5040
     tcgtccgacc gctaactggg aggggtgcat cggttaaaat gtatgtttcg cttttcgtat      5100
     gtctagtggt gaaggccgta cacctcgagg ttgtagctga tttatcgacc gcgtcgtgta      5160
     taaatgccgt caaacgggta gtcgcgcgcc gtggtcgtat cgtcgaaata cactgtgaca      5220
     atgcaaccgc tttcgtcggg gcggatcgtg acctcgccat gtcgcgcaac gaatttctgc      5280
     aacagttcaa gggcgatgaa tggcgacact attgcttgga taatggcatc aaatttcagt      5340
     ttattccggc acgttcacct catttcggtg gtatttggga ggcgggaata aaatcgttca      5400
     aacatcactt ccgtcgcatc atgggactca aggcgtttac gttagatcag ttccatacag      5460
     tcgttacgca agttgaagct atcctcaatt cccgccccct atctccaatg accgatttac      5520
     ccgatgacct agctgctcta acaccagggc actttctagt tggggagcca cttgtcgcca      5580
     tacctgagcc cgacttggat caaatcaacc cagggcgatt aaaccgttta caagacatga      5640
     aaaagacggt acaggacctc tggaaacgtt ggtcacgcga ctatgtaagt caacttcatc      5700
     aacgtcctaa atggaagcaa caacagtcca atattcaacc aggacaatta gtactactga      5760
     aggaacaaac cccgcctctt cattggccgt tagctcgtgt ggtagaggct ataccgggca      5820
     aggacggatt tgttcgagtt atcgtagtac agaccccgca cggccgttat aagcgtgctg      5880
     tcagtgaagt ttcggtcctt ccgatcgatg aggagaaaat cgaaggataa catctgatat      5940
     tagttgaaac taagcgtttc aacgggggcc gcta                                  5974
//
ID   BEL-799_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-799_AA-I;
KW   BEL-799_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-273
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-273
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 169-169 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 273 BP; 81 A; 61 C; 46 G; 85 T; 0 other;
     tgttcacgag gatcctctta acttaaatga aagtgtgttt agttttctgg ttttttattt        60
     tgaagcaaac tgtgtactcc atctctactc tcactctcca tcacaacccg ctcaatcatt       120
     cgattctata gaaataccac aattgaaagg aataaagtta gttatattat gtccagcaaa       180
     tcgatcgcac gtttttcttt gcgcgtccga aacccagcac agtgcgaaac taatatcgga       240
     gtgatttgcc aagtggcaaa atagtcccga aca                                    273
//
ID   BEL-79B_AA-I repbase;    DNA;    INV; 5645 BP.
XX
AC   .
XX
DT   30-NOV-2018 (Rel. 25.01, Created)
DT   30-NOV-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-79B_;
KW   BEL-79B_AA-I; BEL-79B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5645
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5645
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-NOV-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..5643
FT                 /product="BEL-79B_AA-I_1p"
FT                 /translation="MSLCRTPPRRTENPDDVRLLTKKRGQIKAKVTRISNY
FT                 FDAAEEEDRRLPLPVLRVHAKNLQVIYEEFNNIHDAIIASVDEENVDFQEE
FT                 KYVEFEELYNDTLIKVEMMIEALEKENRTTLPMPVPPSSSAVNQSSGQPLI
FT                 VNTHSYRTPLPTFDGRYEAWPRFKAMFQDMMQRSNDSDAVKLYHLETSLRG
FT                 EAEGVIDIETLQNNNYARAWEILEERFGNQRLIIESHILGLLSMQKISRKS
FT                 SKELRNLVDECSRHVDNLIKLDQQLIGMSQLFVVTLLTRVLDNQTRELWEA
FT                 SINQSELPKYEQMIDFLKQRCVILERCENATPTSASKISNPKILPTKGGSY
FT                 KSHAVTASSEYTCDFCSGQHQNFKCPAFQKMNIEQRQSKLKSANLCFNCLR
FT                 KGHRSAACPSDKSCGKCSKKHHTLVHFEQQEKLDARASEAPNSVEANPLPA
FT                 VSERPVNASYSSVFRPPTKQVFLMTAMVVLRSKSGHTHQVRALLDSGSQVN
FT                 LLSESVVKKLNLPKYPANVPVVGVGGVRSQIRHRVAVEVTSKTSNFTVNID
FT                 CLVTPKVTGTVPAVNVDVDSWRIPSGIELADDSFNYPRELEMLIGAEYFFD
FT                 VLKQGQIKLADHLPTLYETQFGWVVAGSYEEIEEDSPVCSNLAVSDGLEAC
FT                 LQRFFEQEEIAEPALMTSEEEDFEEHFQRTYRRNQDGRFVVQLPFRESVDQ
FT                 LKSSRSLALKRFLQLEKRLARDPELKEQYAAFIDEYQSLGHCREIKEEEDP
FT                 PNLQTYYLPHHCVLKPSSSSTKLRVVFDATAKASELSLNDVLMTGSNSQSD
FT                 LFSIVLRFRTHVFVFTVDVAKMYRQILIDPAHARYQRIFWRNQPSEALKVL
FT                 ELTTVTYGTSAASFLAVRSLIQLAKDESENYPDAAEVIFNDSYMDDILSGS
FT                 NSIESTKKLRYDLEEVMLKGGFRIRKWCSNSEEILEGIAEEDRENLVPIQD
FT                 SSANEAIKTLGVLWDPKEDLFLFHKPFNSTEKEDRMTKRQILSAIAKLFDP
FT                 LGLVSPVIIEAKMIMQCLWTTNLDWDDPVEGELLRRWAEFQDSLCQLNSVK
FT                 IPRCVVFADVEVMEIHGFADASKFAYGACVYLRCIRKDGTADAHLLCSKSK
FT                 VAPLREMTIPRLELCAAVLLAKLVDKVVPTLKLNIRDIKLWSDSQIVLAWL
FT                 KKSQDRLQVYIRNRVTEINRLSERCEWNYIKTDQNPADIVSRGMKPILLSK
FT                 CQLWWTGPDFLRVVDYEMEPIEEISEESIPELKDVAIVNPVIVRPEINFDQ
FT                 YNSFYKLQRIYGHVARFIRRIRAPKNKQGSCGRLTVQDLRQAMRYIIRLLQ
FT                 QGELQKEIQCIQRGETPKHLAALQPFIDEDGFLRVGGRLQSSKLPYEAKHQ
FT                 LILPQKHRITELLIKKIHEERLHEGQSGVLAAIRQHFWLINARSVIRKVIH
FT                 NCMKCFRTKPRMIQPPMGNLPECRVNIAAPFELTGVDYAGPVSVKEGKYKP
FT                 KIVKAYIALFVCLVTKAVHLELVSDLTSDAFLAALDRFVNRRGMVRKLFSD
FT                 NGTNFVGALKELRILFNNEVEKNKINDSLLRREVQWEFIPPRSPNFGGLWE
FT                 AGVKVVKSHLARTLGNATLTFEEFNTVLTHIESIVNSRPLFSSSNDPNDPQ
FT                 PITPAHLMLGRPLEPITKPTYENIATNRLSRWQYLDQLRSHFWKRWSREYL
FT                 STLQARAKWTKKQPNINIGTIVLLAEDNQPPQTWKLGRIIAVHPGRDGIIR
FT                 VADVQTTTGVYRRAVSKLAPLPLQDNSEDLQPVLEFDSNGGQ"
XX
SQ   Sequence 5645 BP; 1630 A; 1301 C; 1334 G; 1380 T; 0 other;
     ttggtccttc gagccggatc tggactggag tactgctgct aacgtggccc actgcgcagc        60
     aaagtttgaa aacgagaaaa attcaagttt gtgttccgtt tcacgaggct gacacgctgt       120
     cagtcttcgt ttgtgcgtta aaaaagcgtt tcgcgtggct ttgacaacgc gaaagtccgt       180
     gtttgattcc gacgccgtta aaataaccct cccggtcgtg acgttcgcga aagtttcttg       240
     ttccatcacg tatcatagtt tatcggaagg atattccgtg caagtgttcc accttcacga       300
     ttgatactcg aacgttaccc gtgttcctgt ccagcaagtc aaagcttacg tgtaaggatg       360
     tcgttatgcc gtaccccgcc ccggaggact gaaaatccgg atgatgtaag gttgctgaca       420
     aagaagcgtg gccaaatcaa ggcaaaggtc actcggatct ccaactactt tgatgcagcg       480
     gaagaagaag atagaagact tccccttccc gtcttgagag tgcacgctaa aaatcttcag       540
     gtgatttacg aagaattcaa caatatccat gatgccatca tcgcctccgt cgacgaagaa       600
     aacgttgatt tccaagagga aaagtacgtc gagtttgaag aactttacaa tgacaccctg       660
     atcaaggtag aaatgatgat agaagcgctt gagaaagaga accgaaccac attacccatg       720
     cccgtgccac cgtcatcgtc agcagtgaat caatcgtcgg gtcaaccatt aattgtaaat       780
     acccattcct accgcactcc cttaccaact tttgatggtc gttatgaagc atggccacgc       840
     tttaaagcca tgtttcagga catgatgcaa cgatccaacg attccgatgc cgtgaagctg       900
     taccatttgg agacttcatt gagaggcgaa gctgagggtg tcatcgatat tgaaacgctg       960
     cagaacaaca actacgcaag agcatgggaa attcttgaag aacgttttgg caaccagcgg      1020
     ctgatcatcg agtcccacat ccttggcctc ctgagtatgc aaaagatctc cagaaaatct      1080
     tcaaaggaat tacgaaattt ggtagatgag tgttcccgtc acgtcgacaa tctcatcaag      1140
     ctggatcagc agttaatcgg aatgtctcag ctattcgtcg tgaccttgtt gacgcgtgtt      1200
     ttggataacc aaacccgtga gctgtgggaa gcttccatta accagtccga acttccgaag      1260
     tacgaacaaa tgatcgattt cctgaagcaa cgctgtgtga ttttggaacg atgtgaaaat      1320
     gctactccaa catcagcttc caagatttcg aatccgaaga tccttccaac caagggtgga      1380
     tcctacaagt cacatgccgt gacagcgtca tcggaataca cttgcgactt ttgttccggt      1440
     cagcaccaga atttcaaatg cccagccttc cagaagatga atattgaaca gcgccaaagc      1500
     aaattgaaat cagctaattt gtgcttcaat tgcctgagaa agggccaccg cagcgcagca      1560
     tgtcctagtg acaaatcatg tggaaagtgt tccaaaaagc accataccct ggtgcatttc      1620
     gagcagcaag agaagttaga tgcgagagca agtgaggcac ccaactcggt tgaagcgaat      1680
     ccactaccag cagtatcgga gcgacctgtg aatgcctcct attccagtgt gttccgtcca      1740
     ccaaccaagc aagtatttct catgacagct atggtcgttc tccgttccaa gagcggccat      1800
     acacatcaag ttcgagcgtt actggattca ggatcacagg tcaaccttct gtcggagtct      1860
     gtggttaaaa agttaaacct acccaaatat cctgccaatg ttcctgtagt cggtgttgga      1920
     ggtgtgcgat cccagatacg tcatcgagta gcagtggaag ttacatccaa gaccagcaac      1980
     tttactgtta acattgactg tctcgttaca ccgaaagtga ctggtactgt tccggccgta      2040
     aatgtcgatg tggattcttg gcgtattccc tccggaatcg aactagcgga tgattcgttc      2100
     aactatccaa gagaattgga aatgctgata ggtgccgaat actttttcga cgttctgaag      2160
     caaggacaaa tcaagctggc ggaccacctt cctaccttgt acgaaacgca attcggatgg      2220
     gtagttgcag gttcttacga ggaaatcgaa gaagattctc cagtgtgctc caacctggcc      2280
     gtatccgatg gattggaagc atgcttgcaa cgttttttcg agcaagagga aatcgctgag      2340
     ccagcattga tgacgagcga ggaagaagac ttcgaagaac attttcaacg aacctaccgt      2400
     cgtaatcagg atggtcgatt cgtggtccag ctgccctttc gtgaatcagt ggatcagctg      2460
     aagagttcca gatccttggc attaaagcga tttctgcagt tggaaaaaag attggcccga      2520
     gatccagagt taaaggaaca gtatgcggcg tttattgacg aataccagtc attgggccac      2580
     tgtcgtgaaa tcaaggaaga ggaagatcca ccaaatctcc agacgtacta tctaccgcat      2640
     cactgcgtct tgaagccttc cagtagcagt acgaaacttc gtgttgtatt cgacgcaaca      2700
     gctaaagcaa gcgaactatc cctgaatgac gttctgatga ctggatcaaa cagccagagc      2760
     gacctgttca gtatagtgct acgatttcga actcatgtat tcgttttcac cgtggatgta      2820
     gcaaaaatgt atcggcaaat cctaatcgat cccgcccacg ctcgatatca gcgaatattc      2880
     tggcgaaatc aaccgtcgga agcactgaag gttttggagc tgacaactgt aacgtatggg      2940
     acttcagcgg catcgttttt ggctgtaaga tcactcatcc agttagccaa ggacgagagt      3000
     gaaaattatc cagatgcagc agaagtgatt ttcaacgact cgtatatgga cgacatcctg      3060
     tctggatcga actcaattga atcaaccaag aaacttcgtt atgatctgga agaagtgatg      3120
     ctgaagggtg gatttcgaat acggaagtgg tgctccaatt cagaagagat acttgaaggg      3180
     attgctgaag aggatcgaga gaacctagta cccatccaag actccagtgc aaatgaagcc      3240
     atcaagaccc taggagtttt gtgggatcct aaggaagacc tgttcctgtt ccacaagccg      3300
     ttcaactcaa ctgaaaagga agacaggatg acaaagaggc aaatcctgtc cgcgatagcc      3360
     aagttatttg acccgttggg actagtatca ccggttatca tagaagcaaa gatgataatg      3420
     caatgcctgt ggaccaccaa ccttgactgg gatgatcctg tggaaggtga attacttcgg      3480
     cggtgggctg agttccagga ttcgctgtgt cagctcaaca gtgtcaagat tccaagatgc      3540
     gtcgtgttcg ctgatgtaga ggtaatggag atccatggtt tcgctgatgc ctctaaattt      3600
     gcgtatggtg cttgcgttta tcttcgttgc attcgtaagg acggaacagc tgatgctcat      3660
     cttctatgca gcaaatccaa ggttgctcct ctccgtgaaa tgacgattcc tagattggag      3720
     ctgtgcgctg cggtactgct agccaagtta gtagataagg tggtcccgac tctgaagtta      3780
     aacatccgtg atatcaagct gtggtccgat agtcaaatcg tcctggcatg gctgaagaaa      3840
     tcccaggata ggctgcaagt ttatattcgc aaccgtgtta ccgaaatcaa tagactgagt      3900
     gaacgatgcg aatggaatta catcaagaca gatcaaaatc cagccgatat agtatctcga      3960
     ggaatgaagc caatcctgct gagcaagtgt cagttgtggt ggactggtcc agattttctt      4020
     cgtgtggtcg actatgaaat ggaaccgata gaagaaattt ccgaagaatc cattcccgag      4080
     ttaaaggatg tggccatcgt caacccggtc atagttagac ccgaaatcaa ctttgatcag      4140
     tacaattcgt tttacaaact tcagcgtatt tacggtcatg ttgctcgatt cattcgccgt      4200
     attcgggctc ccaagaataa gcaaggttca tgtggacgat taacggtaca agacctgcgt      4260
     caagcaatga gatacatcat ccgacttctc cagcaaggtg aacttcaaaa ggagatacag      4320
     tgcattcaac gaggtgaaac cccaaagcat ctggctgcat tacaaccatt catagacgag      4380
     gatggtttcc tgcgagtcgg aggtcgtctg caaagctcga agttacctta tgaagctaaa      4440
     catcaattga tacttcctca aaaacatcga ataactgaac tgctgatcaa gaaaatccat      4500
     gaagaacgac tccacgaagg ccaatctgga gttttggcag ctattcgaca gcatttctgg      4560
     ctcatcaacg ctcgttcagt catccgaaag gtaatccaca actgcatgaa atgtttccgc      4620
     actaagccga ggatgattca acctccaatg ggaaatcttc ctgaatgccg agttaacatc      4680
     gctgcaccgt tcgagttgac tggcgtcgac tatgctggac cagtatcagt aaaggaaggc      4740
     aagtacaaac ccaagattgt gaaggcatac atcgctctat ttgtgtgtct agttacaaag      4800
     gcagttcatc tagaacttgt atcggatttg acatccgatg cgttcctggc tgcattggat      4860
     cgattcgtca accgacgagg tatggtgagg aagttgttct ccgacaacgg aacaaacttc      4920
     gttggtgcac tcaaggagct gcgaatcctg tttaacaacg aggtcgagaa gaataaaatc      4980
     aacgattccc tactgcgtcg tgaagtgcaa tgggagttca ttccaccaag atcgcccaat      5040
     tttggaggat tatgggaagc aggagtgaag gtggtgaaat cacatctggc cagaactctg      5100
     gggaacgcca cattaacctt tgaagagttc aacaccgtac taactcacat tgagtcaata      5160
     gttaactctc gaccattgtt tagttcatcc aatgatccaa atgatccgca accaataact      5220
     ccagctcatc taatgctagg aagaccactg gagccaataa ccaaaccaac ttacgaaaac      5280
     atcgctacta atcgactatc gagatggcag tatttggatc agttgaggag ccatttttgg      5340
     aaaaggtggt ctcgagagta cctatcaacg cttcaagcaa gagcgaagtg gacgaagaaa      5400
     cagcccaaca tcaacatcgg cacgattgtc ctactggcag aagacaatca accaccacaa      5460
     acctggaaat taggaagaat catcgccgtt catccaggaa gggacggtat catacgagtt      5520
     gctgacgtac agacaacaac cggcgtgtat cgacgagcgg taagcaaatt agctcctcta      5580
     cctctgcagg acaacagcga agatcttcaa ccagtattgg aattcgattc caacgggggg      5640
     cagaa                                                                  5645
//
ID   BEL-79_AA-I repbase;    DNA;    INV; 2422 BP.
XX
AC   supercont1.172;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-79_AA_;
KW   BEL-79_AA-LTR; BEL-79_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2422
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.172; Positions  668639  666218.
XX
CC   'GTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           294..2420
FT                 /product="BEL-79_AA-I_1p"
FT                 /translation="MSLSRTPPRRTDNMDNVRMLTKKRGHIKAKVTRISNF
FT                 FDAAGEEERIIPLPVLRVHAKNLQVFYEEFNNIHDAIIAFVDEENVDFQEE
FT                 KYVEFEELYNETLIKVEMMIEAIEKENQITLPIPVTSSSSAANHSSGQPII
FT                 VNTQSYRIPLPTFDGRYEAWPRFKAMFQDMMQRSNDSDAVKLYHLETSLRG
FT                 DAEGVIDIETLQNNNYARAWEILEERFGNQRVIIESHILGLLSMKKISKRS
FT                 SKELRNLVDECSRHVDNLIKLDQQLTGMSQLFVVTLLARVLDDQTRELWEA
FT                 SFNQSKLPEYEQMIDFLKQRCVILERCENSTPSSASKIPNPKVLSRSESYK
FT                 SHVITTASEYACDVCSGQHQNCKCPAFQKMSIEQRQYKLKSANLCFNCLRK
FT                 GHRSAACRSDKSCGKCSKKHHTLIHYEQRKSVFRPPSKQVFLMTAMVILRS
FT                 ESGRTHQVRALLDSGSQVNLLSESVVKKLNLPKHPTNVPVVGVGGLRSQIH
FT                 HQVAVEVTSKTSNFTTNIDCLVTPKITGTVPSVNVEVNSWRIPSGIELADE
FT                 SFNYPSELEMLIGAEHFFEVLKQGQIKLADHLPTLYETQFGWVVAGSYKEI
FT                 EKDPPVCCNMAVSDGMQTCIEQGKFAEPALMASAEEDNEGQFQRSYLCHED
FT                 GRFVVQLPFRDSVDQLESSRSLALKRFLRLEKGLHRKSCWQGDNSEDLQPV
FT                 LEFDSNGGQ"
XX
SQ   Sequence 2422 BP; 690 A; 567 C; 581 G; 584 T; 0 other;
     ttggtccttc gaaccggatc tggactggag tactgctgct aagtaagtaa agcgttttgc        60
     gtggctgaca acgcaaaaga gcgttcgcgt ggctttgaca acgcgaaaaa cccatagttt       120
     gcttcgttgg tattccgttt tgcgtgactc actgcgactt gcgtgaaagt cgtttttccg       180
     tcacgtgtcg tagttcatcg gaaggatatc ctgtgcgtgt gttccacctt cacgattgaa       240
     gctcgaacgt gacccttgta cctgtccaac aagtcgaagc tttcgtgtga aagatgtcgt       300
     taagccgtac cccgccccgg aggacagaca atatggacaa tgtgaggatg ctgacgaaaa       360
     agcgaggcca tatcaaggcg aaggtcactc ggatctccaa cttctttgat gcagcaggag       420
     aagaagaaag aataataccc cttcccgtcc tgcgagtgca tgcgaaaaat ctccaggtgt       480
     tctatgaaga attcaacaac atccatgacg ccatcattgc cttcgtcgac gaagaaaatg       540
     tcgatttcca agaagaaaag tacgttgagt ttgaagaact ctacaatgaa accctgatca       600
     aggtggaaat gatgatagaa gcgattgaga aagagaacca aatcaccttg cctatacccg       660
     tgacatcgtc atcgtccgca gcgaatcact cgtcgggcca accaataatt gtgaacactc       720
     aatcctatcg cattcctcta ccgacctttg atggtcgtta cgaagcatgg ccacgcttca       780
     aagccatgtt tcaagacatg atgcaacgat ccaacgattc cgatgccgtg aagctgtacc       840
     atttggaaac ctcgttgaga ggcgacgctg aaggtgtcat cgacatagaa acgttgcaga       900
     ataacaatta cgcaagagca tgggagattc tggaagaacg ttttggcaac cagcgagtga       960
     tcatcgagtc ccacatactt ggcctcctga gtatgaaaaa gatttccaag aggtcttcaa      1020
     aggaactgcg gaatctggta gatgaatgtt cccgccacgt cgacaatctc atcaagctgg      1080
     atcagcagtt aaccggaatg tctcagctat tcgtggttac attgttggct cgtgttttgg      1140
     acgaccaaac ccgtgagctc tgggaagctt ctttcaacca gtcgaaactc ccagagtacg      1200
     aacagatgat cgatttcctg aagcaacgct gtgtgatttt agaacggtgt gaaaattcta      1260
     ctccaagctc agcttccaag attccgaatc cgaaggtcct ttccagaagt gaatcctaca      1320
     agtcacatgt cataacaacg gcttcagaat atgcgtgcga cgtttgttcc ggccagcacc      1380
     agaattgcaa atgcccagct ttccagaaga tgagcatcga gcagcgccaa tacaaactga      1440
     aatcggccaa tttgtgcttc aactgcctaa ggaagggcca ccgcagcgca gcatgccgta      1500
     gtgacaaatc ctgtggaaag tgttccaaaa agcaccatac cttaatacat tacgagcaac      1560
     gaaaaagtgt gtttcgtcca ccaagcaagc aagtatttct catgacagcg atggtcattc      1620
     tacgttccga aagcggccgt acccatcaag ttcgagcatt actggattca gggtcgcagg      1680
     tcaaccttct gtcggaatct gtggttaaga agttaaacct tcccaaacat ccaaccaacg      1740
     ttccagtagt cggcgtaggt ggtctgcgat cccagatcca tcatcaagta gcagtggaag      1800
     ttacatccaa gaccagcaat tttactacta acatagactg tctcgttaca ccgaagataa      1860
     ctggtactgt tccgtccgtg aatgttgaag taaattcttg gcgtattccc tccggtatcg      1920
     aactagctga tgaatcgttc aactatccaa gcgaattgga aatgctgata ggtgcggaac      1980
     atttcttcga agttctgaaa caaggccaaa tcaagctggc ggaccacctg cctactttgt      2040
     atgaaactca attcggatgg gtagttgcag gttcttataa ggaaatcgaa aaggatcctc      2100
     cagtgtgctg caacatggcc gtatccgatg gaatgcaaac atgcatagaa caaggaaaat      2160
     ttgctgagcc agcattgatg gcgagtgcgg aagaagacaa cgaaggacag tttcaacgat      2220
     cctacctttg tcatgaagat gggcgattcg tggtccagct gccttttcgt gattcagtgg      2280
     atcagctgga gagctccaga tcattggcat tgaagcgatt tctgcggtta gagaaaggat      2340
     tgcatcgtaa gagttgctgg caaggcgaca acagcgaaga tctacaacca gtgttggaat      2400
     tcgattccaa cggggggcag ta                                               2422
//
ID   BEL-79_AA-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   supercont1.172;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-79_AA_;
KW   BEL-79_AA-I; BEL-79_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-359
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.172; Positions  666217  665859.
XX
SQ   Sequence 359 BP; 96 A; 90 C; 86 G; 87 T; 0 other;
     tgtacgcgat tagcgtgccc agcggcaagg agttttctga tcgtagccac ctatgtagct        60
     acgactgggc aagttaacaa ccacgttagc aacagccacg cgacagatgg gctccgaagt       120
     ttctggatag aagccggagt actataaaag gagggcaccc agctcgagcg agtcagtctc       180
     aatccggaag ccaacaagtg aacatttaag caactaattg taaataaagt ttagtattag       240
     cagcagtata gtgtattgtg tgttcctgta ttccctgccc tggaattggt cctagttttc       300
     cctttccacc agttcatcgc tccgcctaca aacgttgggt tcacggccga gcccaaaca        359
//
ID   BEL-79_CQ-I repbase;    DNA;    INV; 5870 BP.
XX
AC   AAWU01022182;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-79_CQ_;
KW   BEL-79_CQ-LTR; BEL-79_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5870
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 299-299 (2011).
XX
DR   GenBank; AAWU01022182; Positions    4016    9885.
XX
CC   Positions [4845-5429] - Integrase core
CC   'CCCTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           567..5840
FT                 /product="BEL-79_CQ-I_1p"
FT                 /translation="MAAEKKIAVTSYTRMIDSIKERGKKLLIFVRDFDSEK
FT                 LDRSLLEDKQESVEEMRSLFHETEVKLYGVIKEDEVSAFQQTNEEVEDLLD
FT                 EIRHLVRQRLREIDPPKPVSEQVKVSSSHQAHPKLPDIPLPHFSGNPEDWH
FT                 LFKDTFTALIKRREGLADSEKLFYLRAAIQDGKARFIQSAEDTFVSLWKAL
FT                 RQEYENKRVLVEKHIAQLFHLEPIASESGSDLRTLINEVSQSLRALANMNL
FT                 KVESLSEQFMIHLVCSRLDPGTRKDFELQLTNNALPSWEKLFEYLQSRCRC
FT                 LESIENETKDKSVPRGKTTPQERSAPRQSKAFPVQTAPPRSRSSNINVKCF
FT                 VCKGAHYLNKCGQFLALSASDRSAKIKELGLCLNCFSNKHYLRECRSSSCR
FT                 TCGGRHHTLLHLPHTAPTSNVPNQGQAPTPSQSMSSSNSVVGCDTSSIPSA
FT                 KQFVLYTAVEVVEDAYGNSIKCRILLDCGSMHNIISSRIVNMLKLPKVKAN
FT                 VCVAGVSGAPQLIKSKVAARIRSTTNPDCLYELEFLMMKKITTDIPIETFD
FT                 VNPERFPAGVHLADPLFNRSRRIDILLGIQTFNDLFTGASFPLADDRTLWC
FT                 KETTFGWVVGGAVTERRADETSTSTCGVVTNEMLSEQIKQFWDSEAVPEIR
FT                 ALTADERAAEQSYSDTCRRLRDGRYEVGLPVKESIRELGDSRAMALSRFVQ
FT                 MERRMHRDENLREQYVAFMKDYEDQEHMIEADEVPGGYFMPHHAVFNPAST
FT                 TTKTRVVFDASAGTTSGSSLNDHLYVGPALQRKLYDIVIRFRFPQFVFTAD
FT                 MTQMFRQIRIRSEDRKYQQIFWRRHPDELVKVYQLATVTYGTACAPFLATR
FT                 TLAQVCKDEIERFPLAAKAGTDDVYMDDLLSGADTLEEALVLQKEFVAMMK
FT                 SAGFDLHKWASNHPDLLKSVPNADNEQDAFFKDQKTTRTLGLTWQPSSDKF
FT                 LTKLHEIRFNTGPPTKRSQYSDIAKLYDPIGLLGPVIFKAKVMMQKLWEVE
FT                 VEWDDVLPDTEEWDTFRNQIAEMGEIEIPRNVIPHPNPLQIELHGFSDASM
FT                 LGYGASVYARCVYSREYSTVRLLTSKSRIAPSKNAKQTIPRLELDGGLVLA
FT                 RLISNLTHILSIPFTRIVCWMDSTVALSWIRTDPGRLDTYVSNRVIQIQEL
FT                 TKNFEWKYVSSHENPADVLSRGLLPTEIRECPIWWQDLTYLDQNEPLWPSQ
FT                 PPTIPVEQLPETRNPTVSLPITDPPAMFNLFEIESSFRRMQRTMATMLRFI
FT                 DCIRKDDQRERRSGHLTIAELNRATAALTSIAQREAFPDDFQQLESGKVIH
FT                 SRSKLITLCVFSDRSKFNVLRVGGRLRHSNLTVGQKHPMVLPSKHPFTDAV
FT                 VRSYHEEFLHAPQQLLLSALRRRFWVQHGCSTVRKIIRRCVTCFKAKPVAM
FT                 QQMMGDLPKSRLEGVCPFLNAGVDFAGPMYIRQHNKRSTVTYKAYVAVFLC
FT                 FATRAIHLELVGDLTADAFIAALQRFVSRRGKPVKLFSDNGLNFVGSKNKL
FT                 RDLYKLFRSQQLKGKLDDFCTKTSIDWRMIPPNAPHFGGLWEAGVRSAKYH
FT                 LKRITGTANMNFEEFTTVLARIEAVLNSRPISPMSEDPTDATPLTPGHFLV
FT                 GRPLTDIAEPDLSDRKETTLSRWQRQTHMVQHFWARWHQDYLTTLQNRNKW
FT                 HKRYEIKPGQLVIIREDNVPTMQWKLGRIENVIPGPDGLVRVADVRAGKKV
FT                 IRRAIAKLCLLPIEDNNAEQPEAEAADDGSNDQEEQED"
XX
SQ   Sequence 5870 BP; 1448 A; 1584 C; 1626 G; 1212 T; 0 other;
     taaaagtggt ccttcgaacc ggattcgaag accgggtccg aaggacgtga aggacggtga        60
     ccagtgacag tgaagtgacc acgaaaaacg gtggacacgg acgcgtgtgg gggaacaatt       120
     gttcctgggc gttccgcgtt ggacattgtt tgtgcgaaca aaatggacgg tcggtccatg       180
     tgattcacga tcgaagcaac gaagaacaat tggtgcgaga aattggacga ttgaagtgca       240
     cggacaattt gtgctatttg aacacgaaaa gaactgtgtg cgacaaaact gcgagccaaa       300
     aaagagtgca acaattctca gccgagggct gaaacagtgg ccttcgggca aaaagaacac       360
     gtgcagttga gttgatcgtg actgtggggg tcattgagcc gcggtgcggt gcgcactgct       420
     cgatgccagc tggatcaccc acgtgatcgc tgtatgtatg ctcttcatgc ctttcaggtc       480
     ggtctaggtg gaatccaggt tagaggtcag gtaggtcgtg caagtgggtg cgttgtttcc       540
     gggagaattt ttgggaatcg ctcaaaatgg cggccgagaa gaaaatcgcg gtgacgtcat       600
     acacccgtat gattgactcc attaaggagc ggggtaaaaa actgttgatc tttgtgcgtg       660
     attttgattc cgagaagctt gatcgctcac ttctcgaaga caagcaggaa tcggtcgaag       720
     aaatgcgttc tttgttccac gagaccgagg ttaaattgta cggtgtcatt aaagaggatg       780
     aggtttcggc attccaacaa accaacgagg aagtggagga cttgctcgac gagatccgcc       840
     atcttgttcg acaaagactg cgagaaatcg atcctcccaa gccggtgagt gagcaggtca       900
     aggtatcttc ctctcatcaa gcccatccca agttgcccga catccccctc cctcacttca       960
     gcggaaatcc ggaagattgg cacctgttca aggacacgtt tactgcgcta atcaagcgtc      1020
     gcgaaggtct cgccgacagc gagaagctat tctacctgag ggcggccatt caagatggca      1080
     aagctcgctt catccagtct gcggaagaca cttttgtctc tctgtggaaa gctcttcgcc      1140
     aagagtacga gaacaaacga gtcctggtag aaaagcacat tgcccaattg ttccacctgg      1200
     agcccattgc tagcgaatct ggatcagatc tgcggaccct gatcaatgaa gttagccaat      1260
     ctctaagagc ccttgcaaac atgaacctca aagtcgagtc gttgtccgag cagttcatga      1320
     tccacctggt gtgttcgcgt ctcgatccag gtacacgcaa ggatttcgaa ctacagctga      1380
     ccaacaacgc gttgccgtcc tgggaaaagc tgttcgaata tctccagtcc cggtgcaggt      1440
     gtcttgagag catagagaac gagactaagg acaagtctgt accacgtggt aagaccaccc      1500
     cccaagaaag atctgcccct cgccagtcca aggcctttcc ggtgcaaaca gctcctccaa      1560
     ggtcgaggtc cagcaacatc aacgtgaagt gcttcgtgtg caagggtgcg cactatttga      1620
     acaaatgtgg tcagttctta gccctgtctg cgtcggatcg ttctgccaag attaaggagt      1680
     tgggcctttg tctaaactgc ttcagcaaca agcactacct gagagagtgc cgaagcagct      1740
     cgtgtcgtac gtgtggtggt cgccaccata ctctgttgca tctgccccac actgccccaa      1800
     cctccaacgt ccccaaccaa gggcaagcac caacaccatc acagagcatg tcgtcatcga      1860
     actctgtcgt tgggtgtgac acgtcgtcga tcccttcagc gaagcaattt gtactgtaca      1920
     ctgcggtgga ggttgttgag gacgcctatg gaaattcgat caagtgccgt attctgctcg      1980
     attgtggctc gatgcacaat atcatctcgt cccgaatcgt caacatgctg aaactcccca      2040
     aggtcaaggc caacgtttgt gtagctggtg tgtctggagc accacaattg atcaagagca      2100
     aggtagcagc aaggattcgc tctaccacga accccgattg tttgtacgag ctggagtttc      2160
     tcatgatgaa gaagatcaca acagacatcc cgatcgaaac ctttgatgtc aaccccgagc      2220
     ggttcccagc aggtgtgcac ctggcagacc ctttgttcaa tcgatcacga cgaatcgata      2280
     ttctgttggg catccaaacg ttcaatgatc tttttacggg cgcgtcgttt cctctggcag      2340
     atgatcgtac actttggtgc aaggaaacga cctttggctg ggtcgtgggc ggagccgtga      2400
     ccgagcgtcg agcagatgag acttccacga gcacgtgcgg agtcgtgacc aacgagatgc      2460
     tgagcgagca gatcaagcag ttctgggact ccgaagccgt tccagaaatc cgtgcgctga      2520
     ccgcggacga gcgggcagcc gagcagagct actcggacac ttgccggaga cttcgagacg      2580
     gtcgatacga agttggactt ccggtgaagg agagcatccg agaacttggc gatagtcgtg      2640
     cgatggcgct gagcagattt gtgcagatgg agcgaaggat gcaccgcgac gagaaccttc      2700
     gtgagcaata cgtggcgttc atgaaggact acgaagacca agagcacatg atcgaggcgg      2760
     acgaggtccc gggtggatac ttcatgcccc accacgcggt gttcaacccg gcgagcacca      2820
     ctacaaagac gcgtgtcgtg ttcgacgcct cagccggtac aacatctggg agctccctga      2880
     acgatcatct gtacgtcggt ccagccctgc agcggaagct ctacgacatc gtgatccgct      2940
     tccgttttcc ccagttcgtg tttacggccg acatgaccca gatgttccga cagattcgga      3000
     ttcgatcaga agaccggaag taccaacaaa ttttctggcg gaggcatcca gatgagctcg      3060
     tgaaggtgta ccagctagct acggtgacgt acgggacagc ctgtgcacca ttcttggcaa      3120
     ccagaacttt ggcgcaagta tgcaaagacg agatcgagcg ctttcccctg gcggcgaagg      3180
     caggaactga cgacgtgtac atggacgact tgttgagtgg tgctgacacg ctggaagaag      3240
     cgttggtgct gcagaaggag tttgtcgcga tgatgaagtc ggctggattt gacctgcaca      3300
     agtgggcatc caaccacccg gacctgctga agtcagttcc gaacgccgac aacgagcagg      3360
     acgcgttctt caaggaccag aagaccacgc gaacgttggg gttaacttgg caacccagca      3420
     gcgacaagtt cctcaccaag ctgcacgaga ttcgcttcaa tactgggcca ccgacgaagc      3480
     gatcccagta ctctgacatc gcgaaactgt acgacccgat cggactgctg ggtcctgtca      3540
     tcttcaaggc gaaggtgatg atgcagaagc tgtgggaagt tgaggtcgag tgggacgatg      3600
     tcttaccaga caccgaggag tgggatacct tccgcaacca gatcgccgag atgggtgaaa      3660
     ttgaaattcc tagaaatgta atcccacacc caaatccgct ccagatagaa ctgcatggct      3720
     tcagcgatgc atcgatgttg ggatacggag catctgtcta cgctcggtgc gtgtacagca      3780
     gggagtacag cacagtcaga ttgctcacct caaagtctcg aatcgcaccc agcaaaaacg      3840
     caaaacagac cattccgcgc ctagaacttg atggcggact tgtacttgca cgactaatct      3900
     ctaacctaac gcacatattg agcattccct ttactagaat agtttgttgg atggattcca      3960
     ccgtggcgct ttcctggatc cggaccgacc caggcagact cgacacctac gtcagcaacc      4020
     gagtcattca gatccaagaa ctgaccaaga actttgaatg gaagtacgtc agctcgcacg      4080
     agaaccccgc tgatgtactc tctcgcggct tactgccgac cgaaatccga gagtgtccga      4140
     tctggtggca ggacttgacg tatttggacc agaacgagcc cctctggcca tcccaaccac      4200
     ccaccatacc tgtagagcaa ctcccggaaa cgcgaaaccc aacagtaagc ctcccaatca      4260
     ctgatcctcc tgctatgttc aacctgttcg agatcgagag cagcttccgg agaatgcagc      4320
     gaacgatggc gacgatgctg cggttcatcg actgcatccg gaaggacgat caacgagagc      4380
     gtcggagcgg acatctgacc atcgccgaac tcaaccgagc gacggcggcg ctgacgagca      4440
     ttgctcaacg agaggcgttc cccgacgact ttcaacagct ggagtccgga aaggtaattc      4500
     acagtagaag taaactaatc accctctgtg tgttctcaga ccgttctaag ttcaacgtgc      4560
     tgcgagtagg cggacggctc cgtcactcca acctcaccgt gggtcagaaa caccccatgg      4620
     tcttgccgtc gaagcacccg ttcaccgacg ccgtggtacg gtcctaccac gaggaatttc      4680
     tgcacgcccc gcagcaactg ctgctgagcg cgttacggcg acgattctgg gtgcagcacg      4740
     ggtgcagtac ggtgcgtaag atcattcgac ggtgcgtcac ttgcttcaag gcgaagccgg      4800
     tggctatgca gcagatgatg ggcgacctgc cgaagtcccg tctcgaaggt gtgtgcccgt      4860
     tcctcaacgc tggtgtggac ttcgctggcc cgatgtacat ccgccagcac aacaagcgtt      4920
     cgacggtcac ctacaaggcg tacgtggcgg tcttcctctg cttcgctaca cgtgccatac      4980
     atctggagct tgtgggagac ctgacggccg atgcgttcat cgccgccctg caacgtttcg      5040
     tctcgaggag aggtaaaccg gtcaagcttt tttccgataa cggtcttaat ttcgtcggca      5100
     gcaagaacaa gttgagggat ctgtacaagc tgtttcggtc ccagcaactc aagggcaagc      5160
     tggacgactt ctgcaccaag acttcgatcg actggcgcat gatccctccc aatgctccgc      5220
     acttcggagg actctgggag gccggcgtgc gctctgccaa gtaccacctc aagcggatca      5280
     ccgggacagc caacatgaac ttcgaggagt tcacgaccgt tctcgctcgc atcgaggctg      5340
     tgctgaactc gagaccgatc agcccgatgt cggaggaccc aaccgatgcc acacctctca      5400
     cgcctggtca cttcctggtg ggacgaccgt tgaccgacat cgccgaacca gacctgtcgg      5460
     accgcaaaga gacgaccctg tcgcgttggc agcggcagac gcacatggtg cagcactttt      5520
     gggctcgctg gcaccaggac tacctcacaa ccttgcagaa ccgaaacaag tggcacaagc      5580
     ggtacgagat caagcctggg cagctagtga tcatccgaga ggacaacgtg ccgacgatgc      5640
     agtggaagct agggcgaatc gagaacgtca tcccgggccc tgacggccta gtgcgggtgg      5700
     ctgacgtacg agctggcaag aaggtgattc gacgggcgat cgcgaagctg tgcctgttgc      5760
     cgatcgagga caacaacgct gaacaacccg aagctgaggc tgcagacgac ggcagcaacg      5820
     atcaggaaga acaagaagat tgaaattcgt ggatttcaat ggggggagca                 5870
//
ID   BEL-79_CQ-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   AAWU01022182;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-79_CQ_;
KW   BEL-79_CQ-I; BEL-79_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-350
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 300-300 (2011).
XX
DR   GenBank; AAWU01022182; Positions    3666    4015.
XX
SQ   Sequence 350 BP; 75 A; 78 C; 75 G; 122 T; 0 other;
     tgtttattgt ggaacaacct aaagtaaatg tagtctagat aaatttgtgt tcagtgttct        60
     atgtactttc tctcttgatc gatttgtgta gtgtaacaat atttgtgtga ccttatcagc       120
     gagagaattg ataagagagc gagatcttaa tctcctctct aggctagcta ttaaatttgg       180
     actaataaat ctgcctcttt cggctctgac cacccgacga ctcggtcatg tgtcctgact       240
     tctagtccgc gcgttctttt ttatttcgat ccgttgcgat ctgttcttgc cggtccccgt       300
     tttccgtggc cggttcctgt ccgctctcga acgagcatcg aaggtgaaca                  350
//
ID   BEL-7_AA-I  repbase;    DNA;    INV; 5976 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_AA_;
KW   BEL-7_AA-LTR; BEL-7_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5976
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 863-863 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5004-5567] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2635..4416
FT                 /product="BEL-7_AA-I_1p"
FT                 /translation="MSPQKLMLSTEDERAIKLMQTSTKFDDGRYQTSLLWK
FT                 YDDVRLPNSKPMALRRHNCLMKRMKRDPILAAAIKSKMEDYLEKGYIRRLS
FT                 PDEIQQPRNKVWYLPIFPVFNPNKPNKIRIVWDAAASVGDVSLNSVLMKGP
FT                 DLLNDLTSVLYRFRERPIAVSGDIAEMFLRVKMNETDQHCQRILWCQDDGT
FT                 TAEYAVTVMTFGVKCSPSCAQYIINLNASKFESQFPEAVEVIYKGHYVDDM
FT                 LASVDSEDDAIKLAKDICFIHEQGGFTMRNWISNSSTVVQALGESGSAEKN
FT                 LYADKEAVLEKVLGIWWDTQTDTFRFKLSLERHQELLSGAKHPTKRDILRV
FT                 MMSVYDPLGLLSHYMIYLKLLFQEIWREGTLWDDEIAETQLQKWKCWLHLL
FT                 PEAESARIPRCYDLSPSLGTNRLVELHTFVDASELGYAAVCYFRFIEENRI
FT                 TCSLVASKIKVAPLKFVSIPRLELQAAVIGTRLAKSVELGHSISIARRFFW
FT                 TDARDVICWLKSDHRKYSQFVAFRVGEILETTDVNEWNWIQGKDNVADEGT
FT                 KWNGLPSFDGKCRWFAGPSFLSKPTVEWRTDMVNGYTVEELRPSLLY"
FT   CDS           4713..5975
FT                 /product="BEL-7_AA-I_2p"
FT                 /translation="MRIRSRIDVCDFADNDTQFPIVLPRGHPLTKLVLQHI
FT                 HEKYHHTGNETFINESRRKFYIPRVRSECEKVRRTCQHCKIRRAKPEPPMM
FT                 ASLPKQRLAAYVRPFSYVGIDYFGPYQVIVGRHPEKRWGVLITCLTTRAIH
FT                 IEIAHSLSTSSCIMALQNCFARRGTPLQIISDRGTNLVGASKELKEALRNL
FT                 DTSKIAAEFTTASTAWSFNPPSSPHMGGAWERLIQTVKRILIQIKPSTRLP
FT                 TDECLRNCLIEIENIVNSRPLTHIPLDDESSSALTPNHFLVGSSNGLKPLV
FT                 SFDDNVISLRQSWKTSQILANYFWKRWVVEYMPMITRRSKWFYPVKPVAVG
FT                 DIVIIVDPSFPRNCWPKGRVIAVKQSKDGQVRSATVQTASGIYDKPVVKLA
FT                 VLDVGTNRSRPDEHPVTAGDCHERPSS"
XX
SQ   Sequence 5976 BP; 1686 A; 1349 C; 1359 G; 1564 T; 18 other;
     ctgtattctw ccgttgcctt cgcaacattt taaagtttcg tttttaatcc ggacgaattt        60
     gattggacga tgcatcggcg ggcgtatgtk ctagaagaca gtatcgwaca aaactgtcca       120
     ctttgtaktc taccggatag cagtcaaatg gtcagctgcg atgamtgcag ccgttggttt       180
     catttggctt gcgcaggcgt gactgagaca atcgcggatt atgattggag ctgccaggga       240
     tgcgttaatg ctagaatctc tgctcctgtt ccgcagttgt cgtcttcaca catacaatgc       300
     gacgctatta ccactggact gccaackgga ctacaaccga cctcaaattt gccaccaatc       360
     tmtggacagg aagcactcgg agttccagtc tcgcttgttw gtggaccaag cgtacaagac       420
     accatctcga ccagtgtctt ccccgtaaga caaaataaca ccgcccatgt agtatstgca       480
     ccagaaaaca ctactgtttc gggtccagmc atggatacga ggcatcagtt ttctgccctg       540
     cccttggtcc cagatgctgc tccaataatg acgactgcac cwttgacaca accgtcgagt       600
     gctgattttg ctgcacaatt gccgatcgag ctgaggcaag catttaatgc aaaagtatca       660
     gatgctgatg gaagatacta ggatcccatc aagatctgct aatgtaccac aattcaatgc       720
     atcatctacg tcgttaattc agcaaccctt tatgtcggcc catcagtcac acataccgac       780
     cgttggattc gcttcaacct cagccattcc taatccgcag caccattcat ccccaatgca       840
     aaatttgcac gaaatcaaca ggcctatgcg taccagtctg ccgtaccaat cgttacccgt       900
     ccagcaacct aacccgcaat atcatccaag catagatcca ttatcaacca ttgggcttgg       960
     aaatgatcaa acagtgctga ataggagtca gattgccgca cgtcaagccg tggttgccac      1020
     aatccaaaat ttcaatttgg aagaacatct ttacaatatt tcattgctac aaaaccttgt      1080
     cgatcgatta ccacctatga tmcggctcaa ttgggcgact tatcgccaag gtttatatcg      1140
     agtaacactc acgcaattca gcgmctggtt mtacaaccta gccgaagcag ctagtgcggt      1200
     gactattccc ccgactctag gatcgataga aaaacaacgc tacactcgta aggacgacgg      1260
     atttttaaat gcccacacgg aaacttttga agaacaagga ttatcttcta aagcatttcg      1320
     tcgatgcctc gtgtgccaag atgactgtaa aactgtagag gattgcagca agtttgcggc      1380
     aatggacctt ccatcccgtt ggaacacttt acgtgaactt aaactgtgtc gatgctgcct      1440
     tggaaagcat ttcggttcct gtaagtccac gaaggtttgc agtataaatg gttgtgcctt      1500
     caaacaccat cagttgctgc acaacgtktc taaggatagg cgcacggaaa ccgccacagg      1560
     ccaccatgwa cctgcaaaca atttacctat tcaaaacagc gttgaacaca attgcaatac      1620
     ccatagagga aacggccaat cggtatattt ccaatacgtt ccagtcgttc tccataatca      1680
     aggaagaaaa attcgcactt acgcattctt agactgtggc tcgtcgttga ccctgattga      1740
     agaaggtctt gcttctgaac tgcgactcaa aggagaaaag catccattgt gcttacgttg      1800
     gactgccgat acgtgccgat acgaggattc agcaagaatt gtcacgttgg atatatccga      1860
     ttcaaacgaa attagtccca aacatcggct cgacgaagtg tattctgtga aggagctcaa      1920
     gctaccggtg caatcattat cgttcgagga gctatcagct aagttcgctt atcttcaagg      1980
     ggtaccagta gattcttacg tggatataca gccgcgaatt ttgattggta tgaacaatgt      2040
     tcgtctaacc cacccacccc ctagaatgtc gagagggtga tgcgaatgag cccgtggcgg      2100
     caaggactag attaggatgg atggttttcg gaacatggcc cgtacaaagt acaacggtcc      2160
     acactgctgt tccacatagc ttccacattt gtcatcactc tgctcccaat gactttgaac      2220
     tcaatgtggc cgttaaacaa tatttcgctt tagaagggtc ctattatgga tcaaatcgac      2280
     tcatattatg gatcagaaca ctataaagca atttatctgc gaggtaaacg aatggtgtgc      2340
     tagtgaagca tacgttccgg cgttttttcg gaatcgtctt atcttgattc ataactgtgg      2400
     tagggtttca atgccccaca gttatgaatc aacgtctgga atacgtgaca ttttatttcc      2460
     tacggacgga aaaatatgag atgttacgat tgattgcgat gctgtacaga tttatggttc      2520
     acgaggtaaa atgtgttctg gtaattgcag ctctattgat gagatattcc ctttacaatc      2580
     tgatccatat ctgtgtgcta tccataactg tggggtgact gtagtatcgg aatcatgagt      2640
     ccacaaaagc taatgctgtc aacagaagat gaacgcgcaa ttaaactaat gcagacatct      2700
     acgaaattcg acgacggcag gtatcaaacg tcattactat ggaagtacga tgatgttcga      2760
     cttcccaata gtaaaccaat ggcgttgagg cgccacaatt gcctgatgaa acgcatgaag      2820
     cgtgatccaa ttctagctgc agccataaaa tctaaaatgg aggactactt agaaaaggga      2880
     tacattcgta gactttcgcc cgatgaaatt cagcaaccaa gaaataaggt ttggtattta      2940
     cctatattcc ccgtttttaa cccaaataag ccgaacaaga tccgcatcgt gtgggatgct      3000
     gcagcttcag taggtgacgt ttcgctcaat tctgtcctca tgaaaggtcc agatcttctg      3060
     aacgatttaa cgtcagtatt gtatcggttt cgagagcggc cgattgcggt ctcaggagat      3120
     attgctgaaa tgttccttcg cgtgaagatg aacgaaacgg atcaacactg ccaacgcatt      3180
     ctttggtgtc aagacgatgg tactaccgcc gagtacgcag taacggtgat gacctttggt      3240
     gtaaaatgct cgcctagctg tgcccagtat atcatcaacc ttaacgcaag caagtttgaa      3300
     tcgcagtttc cagaagccgt agaagttatc tataagggtc actacgtcga cgatatgttg      3360
     gcgagcgtcg atagtgaaga tgatgcaata aaactagcaa aagatatctg ttttatacac      3420
     gaacaaggag gattcactat gaggaactgg atatcgaatt cctcaaccgt cgttcaagcg      3480
     cttggtgagt ccggatcagc tgaaaaaaac ttgtatgccg acaaagaagc ggtgttagag      3540
     aaagttctcg gcatttggtg ggacactcaa acggacacat tccgtttcaa attatccctt      3600
     gaacgacatc aagaactact ttctggtgca aaacacccca cgaagagaga tattctacgg      3660
     gttatgatgt cagtctatga tcctctcggc ttactgtccc actatatgat atatttgaag      3720
     cttttgttcc aagagatttg gagagaaggg acattatggg acgacgagat agcagaaacc      3780
     caattgcaga agtggaagtg ctggttacat ttactccctg aagcagagtc agcgcgtatt      3840
     cctcgctgtt atgatttgtc accttcattg gggacgaata gattggtgga acttcatacg      3900
     ttcgtggatg caagcgagct cgggtatgct gcagtatgct acttccgttt catcgaagaa      3960
     aaccgaataa catgttcgtt agtggcgtcg aaaattaagg tggcgccgct gaaattcgtc      4020
     tctattcctc gcttagaact ccaggcggcc gtaattggaa cccgattagc gaaaagcgtt      4080
     gagctaggac actctattag tatcgcacga cgtttttttt ggactgatgc ccgtgatgtg      4140
     atctgttggc tcaaatctga ccaccgaaaa tattcccagt tcgtcgcctt ccgtgtcggg      4200
     gaaatattgg agaccactga cgttaatgag tggaattgga tacagggaaa ggataatgta      4260
     gccgacgaag gaacaaaatg gaatggactt ccgagttttg atgggaaatg caggtggttt      4320
     gctggaccat cgttcttatc caaaccaacg gtcgaatggc gaacagacat ggtaaatggt      4380
     tataccgttg aagagcttcg tccgagtttg ttgtacmaca gcgccgatgt agttgataaa      4440
     attttggatc ctgaaaaata ttcgaattgg atgcgattac tacgtcacac tacttgggtg      4500
     cttcggtttc ctgcaaatat cttaaggaaa ggtgaaaatc gtcttcgagg accgttaact      4560
     tgcgaagaac tackggtggc ggagaatttc ttgtataaac gggcacagat ggatggttac      4620
     atgcaggaaa tggaaacgtt ggccgcaaat aagcgtctga ctaaaactag cccttataca      4680
     aaactaatcc gtacattgat gactgcggtg ttatgcgtat acggagtcgt atcgatgttt      4740
     gtgactttgc tgacaatgac acacaattcc ctatagtttt accccgcgga catcctctca      4800
     ccaaattggt attgcagcac atacatgaga aatatcacca caccggaaat gagaccttta      4860
     tcaatgaatc aagacgtaaa ttttacatcc caagagtgcg atcggaatgc gaaaaagtgc      4920
     gtcgaacatg tcagcattgc aaaatacgcc gagcaaaacc tgaacctccg atgatggcaa      4980
     gtctaccaaa gcaacgattg gcagcatatg tacgcccatt ttcatacgta ggtattgatt      5040
     actttggtcc ataccaggtc attgttggac gacaccctga gaaacgctgg ggggtgttaa      5100
     taacttgcct gactacacgg gcgatccata ttgagattgc gcattcttta tccacgtcgt      5160
     cgtgtattat ggctctacaa aactgttttg cccgcagagg gactccactg cagataatta      5220
     gtgatcgtgg aaccaacctt gttggggcct ctaaggaact gaaagaagcg cttcgaaatc      5280
     ttgatactag taaaatcgca gcagaattca caacagcttc aacagcatgg agcttcaacc      5340
     caccctcttc tcctcatatg ggtggggcat gggagcggtt gatccagacg gttaaacgaa      5400
     tcctcatcca aattaaaccg tctacacgtt tgcccaccga tgagtgtttg agaaactgtt      5460
     tgattgaaat agagaacatt gtcaacagca gaccgttgac gcacatccca ttggatgatg      5520
     aatcttcctc tgcgcttacc ccaaaccact ttctggtggg gtcttcaaac ggattgaagc      5580
     ctctagtatc tttcgacgat aatgtcatct ctttaaggca atcatggaaa acatctcaaa      5640
     ttttggcgaa ttatttctgg aagcgatggg ttgtagaata catgcctatg ataacacgac      5700
     gatcaaagtg gttctaccca gttaaaccag ttgcggttgg agacatagtt attatagttg      5760
     accctagctt ccctagaaac tgctggccca aagggagagt cattgctgtt aaacaatcca      5820
     aggatggcca ggtgcgatcg gcaacggtgc agactgcatc cggaatttac gataaaccgg      5880
     ttgtgaaatt ggcggtgcta gacgtcggga caaataggag taggccggat gagcatccgg      5940
     ttactgcggg ggactgtcac gaacgcccct cgtcca                                5976
//
ID   BEL-7_AA-LTR repbase;    DNA;    INV; 584 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_AA_;
KW   BEL-7_AA-I; BEL-7_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-584
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 864-864 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 584 BP; 201 A; 88 C; 104 G; 188 T; 3 other;
     tgagcgcacc tcctactcag cgtaccggtt tagattgacg tattacagac agatcgagat        60
     tagctgtcat attctgtgga caaaagaagg aagawagcca acaatacgga atttatccac       120
     gccgatacga gtgatgaaag ctaaatttat tatttaaagg gctaatagct attgaatttg       180
     ttaattactt aatactaaag ttgttattmt tgctaaggta tgaatttata tatccgtgta       240
     attgaacatg cagctaaatt gacctattta cagaaacttc ctctaggtta gattgaattg       300
     tagctgakaa aatgaattag tttctgcatt gaattcgatt tattacggta atttgagatg       360
     ataattgttt gtacttcata tgataacgtg aatttgataa ccctagatat tcctgaaagt       420
     cgcctttgat caaccaattg ccggattaga agctagaaga atttacaaaa cgtaagttaa       480
     cctttgagca gctaaattcg taaatattga aatttaatca gaaatcatga ttttaggaaa       540
     ctttaacgct ggtaataata aaacctgttc aaaacttcgg acca                        584
//
ID   BEL-7_AnFu-I repbase;    DNA;    INV; 5407 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5407
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 700-700 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..5367
FT                 /product="BEL-7_AnFu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MATDGRKTDTKKVLARVATMRSRSQIEALEDFINRYT
FT                 DDDLLQVNVRLSHLEASWTSFEAANLKLETLEEEEAALVILFKERNMLFER
FT                 YCKAKGFLTSKVPQESTTSVTVNAADVSVSSLSKLRLPKLDLPTFDGNTTE
FT                 WLSFKDRFISMIDASPDLTPVMKLQYLLSVLKGDVAKRFQQVTLIADNYNT
FT                 TWQALLDRYDNVRALKREYFRALTSIPPMKGESIEELRRVTDEFHRLTQGL
FT                 SALDEPIALWNTPLCNLLFYKLDAKTLLAWEEFSCNETEDSYKKLQEFLQK
FT                 RLRILVATNHSTHDVQRPSTSKVAGTKPITRLANASVVPSSSSKCYACDDS
FT                 HYLHQCIKFKEMSLSQKDSLIASHKLCRNCFRTGHVAKGCQSKFRCHKCQQ
FT                 RHHTLLHIHQAMPEVSTPDNLIVATTACNTNLTVLLQTAMVCVIDDDGNVF
FT                 KARALLDSGSMSNFMSTALAKRLSNKIQNENVSIIGIGKSESLIRHSVNAT
FT                 ISSHAENFRTRLNFLVLDSPTSCLPTIDVDIRDWKIEELVLADPMFNTPGP
FT                 IDIVIGGDTFWKVQSKERICIGSDKPSLIKTKFGWTVVGSVAIEGQGHPFS
FT                 SNLAIGSKTLEATLQRFWEIDNVSPSNVDQQDDNPCEQLFSTTTVRNAEGK
FT                 FVVRLPKIDNPTVILGASKGIALKRFANIERRLQRNPKMYEQYKQFLKEYE
FT                 TLGHMEVLSDDLHDSIPHCYLPHHPVVKESSTTTKVRVVFDASCKTESGYS
FT                 LNDILRVGPIVQNELFSTILHFRTNPIALCADIEKMYRQIEVHSDDQALQC
FT                 IVWRPDASQEIKGYALKTVTYGTACAPFLATRALIQIANDVMESHPLEANA
FT                 IKNDFYVDDFLSGASDVHTATLLQQNVTRLLNQYGFSLRKWASNDSRVLEN
FT                 IKDEDLASPKGLEFLQDNPITTLGLVWKPQNDTFCYNIKNNPVPIANTKRQ
FT                 LLSSVAQIFDPLGLIGPVVCKAKLMMQQAWNIIDADTGKSIDWDKQLPAKL
FT                 LGSWKPFQQTLHLLKQLHIPRFIFGIDSENCELHIFGDASERAYGSCCYVR
FT                 IKSSHGIATHLLTAKSKLAPIKSHFTIAKLELCAALLNVQLFQKIIAALRF
FT                 APASVTFWSDSTTVLHWLNSSPSRWKTFVANRTSQILHTTNISQWRHIAGD
FT                 ANPADDISRGMDPADIIYSSRWWFGPKWLSDTSEAWPTSLFSIDEGTTTKE
FT                 ESRNPTVTFMATVATTFCDELVSKYSSYTRLQRVVAYCIRFISKVRHHPHK
FT                 PADKVIPENWNPWLTSDELQKAEVALCALQQKQMFSDELHALQKGRPIPRS
FT                 SGLRWVNPKLTDDGLIRVGGRLLNASVPASFKHPIVLSSKHQLTIMLVEEY
FT                 HKKLLHAGPELMLASLRQRFWILGARKLIRAIYHRCVTCFKRNPAFIEQVV
FT                 ADLPAARVTPTRPFSVSGVDYCGPFFVKFGARRATPRKVYIAIFVCFSTRA
FT                 AHIEVVTDLTTAAFIAALQRFVARRGRVKELHSDNGTAFKGAANQLHHLYQ
FT                 QLKTDEKSRELIFGWCAINEIVWKFIPPRAPHFGGLWEAAVKSVKQHLQKQ
FT                 LGDSTIMYEDFLTLCAQIEMCLNSRPLTPIPSETNDLDVLTPGHFLTGSNY
FT                 QMVPDVSLTDIPDNRLTHWQRTQKLLQGIWARWYPEYLQQLQARATKHSKP
FT                 PVTIEVGRVVILKEDNIPPAQWPLARITAIHPGRDQIVRVVTLRTSDHKTI
FT                 MRPVVRIALLPINN"
XX
SQ   Sequence 5407 BP; 1566 A; 1265 C; 1196 G; 1380 T; 0 other;
     tttggtcctt cgaaccggat ttgtggacta tccaaatcgg attattggtt atatcccacc        60
     gtatcatacg gatcacgcca cgtgcaagcg ttgtaacaac tcctagctaa ccctactcta       120
     cgttttttag ctggattttt ggcaaagaag gaaaagttgt gaaggatggc taccgatgga       180
     aggaaaaccg acacgaagaa ggtgctagca cgagttgcca cgatgcgatc acgttctcag       240
     atcgaagcac tcgaagactt tataaaccgg tacacggatg atgatttgct tcaggtaaac       300
     gttcgattat cccacctgga agcatcgtgg acctcctttg aagctgccaa tctaaagctg       360
     gagacgctag aagaggagga agctgcccta gtgattttgt ttaaagagcg aaatatgttg       420
     tttgagcggt actgcaaggc gaaaggtttc ctaacctcaa aggttccaca agaatcgact       480
     acatcggtaa cagtgaacgc agcagatgtg tctgtttcat ccttgtcgaa gctacgcttg       540
     ccaaagttgg atctaccaac cttcgacggg aataccaccg agtggctgag cttcaaggat       600
     cgattcattt caatgatcga tgcatccccc gatctaaccc cagttatgaa gctacagtat       660
     ttgttatcgg tgctgaaagg tgacgttgcc aaacgattcc agcaagttac gttgattgcc       720
     gataactaca ataccacatg gcaggctctc ctggacagat acgacaatgt gcgtgctcta       780
     aaacgggaat attttagggc tctaacttct attcctccaa tgaagggaga atccatcgaa       840
     gagcttcgtc gagtaacaga cgaattccat cgccttacgc aaggtctaag tgcactcgac       900
     gagccgatcg cgctatggaa cacaccgtta tgcaacttgc tgttctacaa actagatgca       960
     aaaactctgt tagcttggga agaattttcg tgcaatgaaa cagaggactc atataagaaa      1020
     ctacaagagt ttcttcagaa gcgattaaga attctcgttg caacgaacca ctccacgcat      1080
     gacgtacaaa ggccgagtac cagcaaggta gccggcacta aacccatcac tagacttgct      1140
     aatgctagtg ttgtgccttc atcgagcagt aagtgctatg cctgtgatga ttcgcattat      1200
     cttcatcaat gcatcaaatt taaggaaatg tcattatctc aaaaggatag ccttatcgca      1260
     tcgcacaagt tatgtcgaaa ctgtttccgg accggacatg tggcaaaagg ctgtcagtcg      1320
     aagtttaggt gccataagtg ccaacaacgg catcataccc tgctccacat tcatcaggct      1380
     atgccagaag tatcaacccc cgataacctg atagtggcaa ccaccgcatg taacactaat      1440
     ctcacggtgc tgctgcagac ggcgatggtt tgtgttatag acgacgacgg caatgttttc      1500
     aaggcgagag cattactgga ctcaggttcg atgtcgaact ttatgtccac agcattagcg      1560
     aagcgactat ccaacaagat tcagaacgaa aatgtatcga tcataggcat tgggaaaagc      1620
     gaaagtctta tacgtcattc tgttaatgca accatctcat cgcacgctga aaacttcaga      1680
     acaaggctca actttttagt gctagactct cctacttcct gcttgccaac catcgacgtt      1740
     gatattcgag attggaaaat cgaagaactt gtactagcag atccaatgtt caacacaccc      1800
     ggtcctatcg atattgtcat cggaggtgac acattctgga aggtacaatc gaaagaaaga      1860
     atttgcatcg gttcagataa accttcttta atcaaaacga agtttggatg gacggttgtc      1920
     ggatcagtag caatagaagg ccaaggtcat cccttttcga gtaatctagc gattggatct      1980
     aaaacattgg aggcaactct tcaaagattt tgggaaatag acaatgtatc accatcaaat      2040
     gttgatcagc aagatgataa tccgtgtgaa caactatttt caaccacaac tgttcgaaat      2100
     gctgaaggca aatttgtagt aagattaccc aagatagaca acccgactgt tatccttggt      2160
     gcatcaaagg ggatagcatt aaaaagattt gctaatattg aacgtcgact gcaaagaaac      2220
     ccgaagatgt atgagcagta taaacaattt ctgaaggagt acgaaacttt aggccacatg      2280
     gaagtactaa gcgatgatct tcatgactca ataccgcact gctatttgcc acatcatcct      2340
     gtcgtgaaag aatctagcac cacaacgaag gtcagagttg tttttgatgc ttcttgtaaa      2400
     acggagtcag ggtattcgct aaacgacata ctacgtgtgg gaccgatagt acagaacgag      2460
     ctgttctcaa ccattcttca ttttcgaact aatcccattg ctctttgcgc tgacatagaa      2520
     aaaatgtacc gacagataga ggtacattcg gacgatcaag cgcttcagtg tattgtgtgg      2580
     cggcctgatg catcgcaaga aattaaaggt tatgccctaa agactgtaac ctatggtact      2640
     gcttgtgcgc cctttctagc aactcgagca ttaatccaaa tcgcaaacga cgtaatggaa      2700
     agtcatccac tagaagcgaa tgccataaag aatgactttt atgtagatga tttcttgtca      2760
     ggtgcgagcg atgtgcatac cgcaactctc ctacagcaaa atgtcacgcg cttactaaac      2820
     cagtatgggt tcagcttgag gaagtgggcg tcgaacgact cacgggtgtt ggagaacatt      2880
     aaggatgaag atttggcgtc gccaaagggt ctggaattcc tacaggacaa tcctatcacg      2940
     actcttggtc ttgtatggaa gccccaaaat gacacgttct gctacaacat aaaaaataac      3000
     ccagtgccca tcgcaaacac caagcgtcaa cttttatctt cagtcgctca aatattcgat      3060
     ccgctggggt taattggacc tgttgtatgc aaggctaagc taatgatgca acaagcctgg      3120
     aatatcattg atgcagatac gggcaagtcg attgattggg ataagcaatt accggcgaaa      3180
     ctgttagggt cgtggaaacc attccaacaa acgcttcatc tactaaaaca actccatatt      3240
     cctcgcttca tctttggaat cgatagtgaa aattgcgaac tgcatatttt tggagacgct      3300
     tcggaacgag cctacggatc atgttgttac gtaagaatca agtctagcca tggtattgct      3360
     acgcatctac taaccgccaa gtccaaattg gctcccatca agtcacattt caccatagca      3420
     aaattagaat tatgtgccgc tttgttaaat gttcaactat tccagaagat catcgcagca      3480
     ctacgttttg ctcctgcttc ggtaacattt tggagcgatt ctaccactgt attgcattgg      3540
     ctgaattcat caccatctcg ctggaagacg ttcgtggcca atcgcacatc tcaaatcctc      3600
     cacactacta acatcagtca atggcgtcac atcgcgggag acgccaatcc agcagatgac      3660
     atttccagag gtatggatcc agctgatatc atctactcat caaggtggtg gtttggtcca      3720
     aaatggctat ctgatacgtc cgaagcatgg cctactagct tattttcaat cgacgaaggg      3780
     acaacaacta aagaagagtc gcgaaaccct acagtcacat ttatggctac tgtcgcaaca      3840
     acgttctgtg atgagttagt gtcgaagtac tcatcgtata ccaggcttca acgcgttgta      3900
     gcctattgta ttcgattcat ctccaaagtt cgacaccatc ctcataagcc tgctgataaa      3960
     gttatccctg agaattggaa tccgtggttg acatccgacg agctacagaa agcagaagtt      4020
     gcactgtgtg cactgcaaca gaagcagatg ttctcagacg agttacatgc gttgcagaaa      4080
     ggtcgaccta ttccccggtc atctggttta cgatgggtaa atccaaaact caccgacgat      4140
     ggtctcatcc gtgtaggagg acgactcctt aatgctagtg ttccagcgtc gtttaaacat      4200
     ccgatcgtgc tctccagcaa gcatcagcta accatcatgt tggttgaaga gtatcataaa      4260
     aaactcctac acgctggacc agaactgatg cttgcgtctt taaggcaacg tttttggatt      4320
     ctaggtgctc ggaagctaat tcgagcaatc taccatcgtt gcgtcacgtg ctttaagaga      4380
     aatccagctt ttattgaaca agtggtagct gatttgcctg ctgctcgagt aacaccaacc      4440
     cgtccttttt cggtctccgg agttgattat tgcggccctt ttttcgtcaa attcggagct      4500
     cgacgtgcaa caccccgcaa ggtctatata gcgatattcg tttgcttctc aacgcgcgca      4560
     gcgcacatcg aggtagtaac agacctgaca acagctgcat ttatcgcagc cctacaacga      4620
     tttgttgcgc ggcgaggaag ggtcaaggag ctgcattcag acaacggaac tgccttcaag      4680
     ggagcagcga atcagttgca tcacttatac cagcagctga aaactgacga gaaatcacga      4740
     gaactgatct ttggttggtg cgcgatcaat gaaatagtgt ggaagtttat tccaccccga      4800
     gctccacact ttggcggtct gtgggaggcc gcggttaagt cggtaaagca gcatcttcag      4860
     aaacaattgg gagactccac tatcatgtac gaagactttc tgacgttatg cgcgcaaatt      4920
     gaaatgtgtc tgaattctcg tccgctcact cccatcccgt cagaaacaaa cgatctggac      4980
     gtattgactc caggtcattt ccttacagga tccaattatc aaatggtacc tgatgtaagt      5040
     ctaactgaca tccctgataa tcgactaacg cattggcaac gtacccaaaa actgctgcaa      5100
     ggtatttggg ctcgttggta cccagagtac ttgcagcagc ttcaagcgcg agccaccaag      5160
     catagcaagc cgccagtcac catcgaagtc gggcgtgtcg tcatcctaaa ggaagataac      5220
     attcctccag ctcagtggcc cctcgctagg attaccgcca tccatccagg aagggatcaa      5280
     atagtccggg ttgttacgct gagaacctcc gaccacaaga caatcatgcg acctgtagtg      5340
     agaatagcct tgcttccaat caataattag atttcgaaat aacgtgttat ttcaaggtag      5400
     ccgggaa                                                                5407
//
ID   BEL-7_AnFu-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-267
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 713-713 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 267 BP; 91 A; 58 C; 52 G; 66 T; 0 other;
     tgttaccgcc taagtcctga tatttgccca atgtgcagtt gtgctgcacg atcgaaggca        60
     gcttagtgct gtcagtaagt gctgtcagtg cgtgctgtca gtgtgtgtaa ctgtcagtca       120
     aaaacacgtt acaaattatt acaacatcaa caacagtacc acgacggaat agttacaagt       180
     aaagcaaacg tgtaaaacca aaaaatctga tttcacgaaa gtgttgaaac cccacaaaaa       240
     tccgaacaca cagtttatcg attaaca                                           267
//
ID   BEL-7_BTa-I repbase;    DNA;    INV; 7884 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7884
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 594-594 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           518..6127
FT                 /product="BEL-7_BTa-I_1p"
FT                 /translation="MLPSSPASNVSLTPSEQLLMDHNYDNGLREQLNRVLR
FT                 QGVTGGGNDDEVNRNAVLNSLPNPTTSLNQNVNNGNVNESDYHTATXTSHT
FT                 FQQRXSAPPSRPPSVHSRDSNDVEIKLIRQRNLIMSEVRTILXKLTEITPE
FT                 NIDSFSFFMXRLEKLQDGFDRTQGEILSTDVSEESVINAQMEFLEMVMKAQ
FT                 SLYQHAKKSSKDSNPNSTTCSNNTRSQVRLPKIVLPRFDGKKLSDWSIFHN
FT                 LFEVTIHKSSTLSNIEKFQYLLAQLEGEPLNLVKNLEFTSENYLVAWDLLV
FT                 DYYHNERRQITYYLSNLLDLQELTASNLSHFYTKIKENMQALEGLGLKPET
FT                 YCSLLVLVLLRKFNNFHKRRFEDSRDEKTKMPTVDEICKYLQDEIAQMSXG
FT                 ESNKFRSNQKCPKLSSAPPVRALQVGKGSSSPSPPQSEGKQGNSGGTTKLP
FT                 PPYLRCKLCPKSSHTLAQCEKFKNITAQDRRDIVTQNHLCYNCLSTSHGVK
FT                 DCESKKRCQSCSKKHHSMLHLSTATALPTQMYQHESTPQPSTSATXGSDQT
FT                 IQPQGQRTLLTESRNMTSVLPTITVLLTAKNGRTLVAKAILDSAADTGVIR
FT                 SECCSLLRIKPSHTEMNLSGLSENQVESKGMAEISISTPDGRLVAPNYPMI
FT                 VVKKITGLLPPVPLDKDLRKILGQYPLADKHFDVPSKPDLILAVDLYALIV
FT                 NGPPLPLGPSLPSVMSTVFGYVVLGKTFSTLSSSMAKPPLPPSQHSSVALL
FT                 RSAPVRSARVLLTCNCSSGLYSKVEQFWALEEPTPSNGLKPEEEYAERLYT
FT                 ETTVQLPSKKYQVDLPFRQNSGNLGESYSTAVKRFHQLESKFRRNPILKEK
FT                 YVQYMKDYEQNGFMREVPRPPEGTPHYYMSHHGVINESSSSTKLRTVYDAS
FT                 MKTSNGKSLNDLLLPGPSLLEDIPMLLLSFRRFPTVFSGDIKQMYLQIELN
FT                 PKHHLFQLIVWRPEPHMQLKTYALVTVCFGVNCSPFLAIRTIKQIIKDHGH
FT                 KYPRAAKALADALYMDDLVYGDKTDEDTKTLLKEVILLLAEGGFFMRKWTS
FT                 NKSAILANFPSEDLEVPKSGFDDPVFKILGAFWACEKDIFSYKIKRAESVN
FT                 TKRGLLSLISSIFDPLGFLTPVIFKAKAFMQELWLISLGWDDPLPQELIHR
FT                 WEKFADELQLLSSIEIPRYIETEDRQVQCHMFCDASELGIACLIYLRSFHP
FT                 STDEYAKITLIVGKSRVAPLKKVSLPRLELCAAALGIKVLKTYLPKIMEYF
FT                 SVKRVFAWSDSTITLAWIQTPSYKLKTFVANRVALIQNLTETVRWGHVEGR
FT                 LNPADVASRGIMPSELKDHPLYWNGPPWLKEKEELWPEQLRIVPSDGKLPE
FT                 LKKFNTVLITAQEEKIEIKFPQSSSWNKVVRAIAYVLRFLIRHDRVIKKGP
FT                 ITVEEFLVAENKTLFLIQKESFGGDIARLKRGEKLTNKSKPLKRLAPYIGV
FT                 DGLIHAQGRLTHAPLPESARYPIILPSKHRLVRLLVEKYHKDNMHAPPQLL
FT                 QSLLRQRFWIMASRGLTRSVFQSCIYCFKVQPRNKIPLMGDLPAERVQQSP
FT                 PFHRTALDFCGHFNVKLHQLRYAIISPVYVCVFVCMSTKAIHLEMASKLST
FT                 DAFVAALQRFVSRRGKPAYIYCDNASNFQGAANRFLKLITSEDPNLILFSH
FT                 NNRVEFRFNVPLGPHLGGLYEAAVKSFKLHLKRVIGDSVLTQEEFQTLTAR
FT                 IEAILNSRPLTPLSSDPRDYQVLTPGHFLIGRPLVALPERQYDTESPPFLH
FT                 RWNLVELYAQQFWQRWHLEYLHTLQPRGKWLEQAGNLEEGTLVLLHDPQSP
FT                 PLKWTRGRVLRTFPGKDNNTRVVEVKTPNGVYKRPVVKLYALPLGSSQ"
XX
SQ   Sequence 7884 BP; 2187 A; 1914 C; 1575 G; 2194 T; 14 other;
     tggtcctccg agccggatat ataaaacttc tgaaaaactt agaaacgttg tagcagccac        60
     ccaggtccta acctccaagc tctcgtccca acaagttaca aacagaagtc ctaatttgac       120
     ccagtcctgc agagacgcag ccacccagcc ccagtgctcc atccaacgat cctgagagaa       180
     tcctgtatcg ttccatccat ttttcctggt gaattctatc cattctccct tcctcccttt       240
     ccgtgttttt tcctaacctc gaaaaaataa cctcaattgc taatccatca tttcaatgga       300
     aaattataag aatttttcat tctattcacc cttaaaagct tagaaaagct taatacagct       360
     gtttactttt catattcaat tcaaaaataa cctatatcga atcttcgcat aattgggtca       420
     attcacaata tcagctgttt tagaaaacag gttgtgaaac tgtataactt ataaaaaaaa       480
     aaaaaaaatt ctttttcgag gttagaaaaa tttgtccatg ttgccttctt ctccagcatc       540
     taatgttagt ttaaccccaa gtgaacagtt actgatggac cacaattacg ataatggtct       600
     gcgggaacaa ttgaaccgag tcttacgtca gggtgtaacg ggtgggggaa acgatgatga       660
     ggttaatcga aatgccgtat tgaattcctt gccaaatccg acaacatcac taaatcaaaa       720
     tgtaaacaat ggaaacgtca atgagagtga ttatcataca gcgactttma cgtcgcacac       780
     atttcagcaa agaktttccg cgcctccttc tcgtcccccc tcggtacatt cgcgggattc       840
     aaatgatgtt gaaatcaaac ttatacgcca gaggaatttg atcatgagcg aagttagaac       900
     cattttgkgg aagttaaccg aaataactcc ggaaaacatt gatagttttt catttttcat       960
     ggawaggctg gaaaaactcc aggatggttt tgacagaact cagggtgaaa ttctctccac      1020
     cgatgtgtca gaggagagtg tgattaacgc tcaaatggaa tttttagaaa tggtgatgaa      1080
     agctcaatca ctatatcaac atgccaaaaa atcttcgaag gattctaatc cgaattctac      1140
     cacatgctct aataatacaa ggtctcaagt gaggctccct aaaatcgtgc tgccgcggtt      1200
     tgatggtaaa aagttgtcag attggtcaat tttccataac ttgtttgagg ttacaattca      1260
     taaatcttcc acgcttagca acattgaaaa gttccaatat ttgctcgccc aactggaagg      1320
     cgaaccactm aatttagtta aaaatttaga atttacttct gaaaattatt tagttgcctg      1380
     ggatttattg gtagattatt atcataatga gagacgacaa ataacttatt acctttcaaa      1440
     tttacttgat ctccaagagt taacggcgtc taatttatct catttctaca ccaaaataaa      1500
     agagaatatg caagcgttgg agggtttagg gttgaaacct gaaacttatt gttcattatt      1560
     ggttttggtt ttattacgga aatttaataa ttttcataaa cgacgatttg aggattctcg      1620
     ggatgaaaaa actaaaatgc caactgttga cgaaatttgc aaatatctac aagacgaaat      1680
     tgcacaaatg tcagawggcg agtctaataa atttcgttca aaccaaaaat gcccaaaact      1740
     ctcatctgct cctccagtga gagctttgca ggtgggaaag ggttcatcat ctccctcccc      1800
     ccctcagtcg gagggtaaac agggaaactc tgggggaact acaaaattac ccccaccata      1860
     tttgcgatgc aagctttgtc ccaaaagctc tcatactcta gctcaatgcg aaaagtttaa      1920
     aaatataact gcacaggatc ggcgtgatat tgtgacacaa aatcatctat gttataattg      1980
     tttgagtaca tctcatgggg ttaaggattg tgagagtaaa aaacgatgtc aatcatgttc      2040
     gaaaaaacat cattctatgc tgcatctttc aactgcaact gcattaccca cccagatgta      2100
     tcaacatgaa tcgactccac aaccttccac atcagccacc awtggttctg atcagacgat      2160
     ccaacctcag ggtcagcgta ccctccttac tgagagtcga aatatgacgt cagtgttgcc      2220
     aacaataact gttttgttga cggcaaaaaa tggccgcaca ttggttgcaa aggccatcct      2280
     agatagcgcg gctgatacgg gcgttatcag atcagagtgt tgttctcttc ttagaattaa      2340
     acctagccac actgaaatga atctttcagg cctatctgaa aatcaggttg agtctaaagg      2400
     catggctgaa atcagcattt caacgcctga tggacggtta gtggctccaa actatcctat      2460
     gatagtcgtc aagaagataa ctggtcttct tccaccagtc ccattagata aggatttgag      2520
     gaaaattctg ggacaatacc cattagctga caaacatttt gatgttccga gcaaacctga      2580
     tctcatttta gctgttgacc tctatgcatt gattgtcaac ggtccccctc tccctctggg      2640
     accctctttg ccatcagtaa tgtccacggt ttttggttat gttgttttgg gaaaaacgtt      2700
     ttcgacgttg tcatcgtcta tggcaaaacc tcccctcccc ccktcgcagc actcatcggt      2760
     agcgctcctc cgctctgctc cggtacgttc ggcaagggtt cttctaacwt gcaactgttc      2820
     tagtggattg tattcaaaag tagagcagtt ttgggcattg gaggagccaa ccccttcgaa      2880
     cggtctgaaa ccggaggaag aatatgcgga acggttgtac acggaaacta cggtgcaact      2940
     cccaagtaaa aaatatcaag tagacttgcc attccgtcaa aattctggga atttgggcga      3000
     gtcgtactcc accgcggtta aaaggtttca tcaattggaa tcgaaatttc gtagaaatcc      3060
     aatcttaaag gaaaaatatg ttcaatatat gaaggattat gaacagaacg gttttatgcg      3120
     ggaagttccc cgccctcctg agggaacgcc tcattattat atgagccacc atggagttat      3180
     aaacgagtcg tcaagtagca caaaacttcg aacagtttac gacgcaagta tgaaaacttc      3240
     taatggaaaa tccttaaatg atctattatt acctggkcct tcattgttag aggacattcc      3300
     tatgcttttg ttgagttttc ggcgttttcc cacggtgttc tcaggggaca ttaaacaaat      3360
     gtaccttcaa atcgaattaa atcctaaaca tcatctattc caactaattg tttggaggcc      3420
     tgaacctcat atgcaactaa aaacttatgc tttagtaaca gtatgttttg gggtaaattg      3480
     ttcaccgttc ttagccatac gcacaataaa acagatcata aaggatcatg gtcataaata      3540
     tcctagggca gcaaaagcgc tagcggacgc gctttacatg gacgatttgg tgtatggtga      3600
     taaaacggat gaggatacca aaactttgtt aaaagaagtm atccttcttt tggctgaagg      3660
     gggttttttc atgagaaaat ggacttccaa taaatcagcc attttggcga attttccttc      3720
     agaagatttg gaggttccga aaagtggatt tgacgacccg gtcttcaaaa tattaggggc      3780
     attttgggct tgtgagaaag acattttctc ttacaaaata aaacgagcag agtccgttaa      3840
     tacaaaaagg ggccttttat cattaatcag ttcgattttt gatccgttag gatttctaac      3900
     acctgtcatt tttaaggcaa aagccttcat gcaggaactt tggttgatta gtttgggwtg      3960
     ggatgaccca ctcccccagg aactaataca tcgttgggaa aagttcgcag atgaattgca      4020
     attgttatct tctatagaga tcccacgata tatagagacc gaagataggc aagtacaatg      4080
     tcatatgttt tgcgatgcaa gtgagctggg aatagcatgc ctgatttatc tgcgatcttt      4140
     ccacccttcc acggatgaat atgcaaaaat aaccctcatt gttgggaaat cgcgtgttgc      4200
     gcctctaaaa aaggtctcat taccacgact tgaattatgt gcagcagcac tgggtataaa      4260
     agtattgaaa acatatctgc caaaaatmat ggaatatttt agtgtaaaaa gagtcttcgc      4320
     ttggtcagat tctacgataa ctttggcctg gattcaaact ccttcataca aactaaaaac      4380
     ttttgtagca aatagagtag cgctaatcca aaatttaaca gaaacagtga gatggggtca      4440
     tgttgaaggc cgcttgaatc cggcagatgt cgcgtcamga ggaataatgc ctagtgaatt      4500
     gaaagatcac cctctgtatt ggaatggtcc accttggtta aaagaaaagg aagaactttg      4560
     gccagagcag ttacgaatag ttccatccga tggaaaatta ccagagttaa aaaagtttaa      4620
     cacggtatta ataacagctc aagaagaaaa gatagaaatt aaatttccac aatcttcttc      4680
     atggaataag gtagtgagag caattgctta tgttttacgt ttcttaatac gtcatgaccg      4740
     tgtcattaaa aaaggaccca ttacagtgga ggaatttcta gtcgctgaaa ataaaactct      4800
     attcttgatt cagaaagaga gttttggggg ggacatcgcc cgcctaaaac gaggtgaaaa      4860
     attaacaaat aaatctaaac cactcaaacg attggcacca tatattggcg tggatggttt      4920
     aattcatgct cagggtcgat taacgcatgc ccctctccca gaatcagcgc ggtatccgat      4980
     aatactacca tcaaaacacc gcttagtgcg ccttctggtt gaaaaatacc ataaggacaa      5040
     catgcacgct cctccgcaac tcctgcaatc tctgttacgt cagagattct ggataatggc      5100
     atcaagagga ttgactcgat cagtgtttca gtcatgtatt tattgcttta aggtacaacc      5160
     tagaaacaaa attcctttaa tgggtgattt accagctgaa agagttcagc agagtccccc      5220
     attccacaga acggcattgg acttttgtgg ccatttcaat gtaaaattgc atcagcttcg      5280
     gtatgcgatt atttctccag tctatgtttg tgtctttgtg tgcatgagca ccaaggcaat      5340
     tcatctagaa atggcctcaa aattgagtac cgatgcgttc gtcgctgcgt tacagcgctt      5400
     cgtcagtaga cgaggcaaac cggcatatat ttattgtgat aatgctagca atttccaggg      5460
     agcggcaaat agatttttaa aattaattac gtcagaggac ccaaatttaa tattgttttc      5520
     tcacaataac agagtggaat ttcgcttcaa tgtaccatta gggccccatt tggggggtct      5580
     gtacgaagct gcagtgaaaa gttttaaact acacctgaaa cgggtgatag gtgatagtgt      5640
     attaactcaa gaggagtttc aaacattgac agcccgtatt gaggctattt taaattcgcg      5700
     tcctctcact ccactctcct ctgacccacg tgattatcag gttctcaccc ctggccattt      5760
     cttaattggt cggccattag tagcgttacc agaaaggcaa tatgacacgg aaagtccacc      5820
     atttctgcat aggtggaatt tggtggagtt gtatgcccaa caattttggc aacgttggca      5880
     ccttgagtac cttcatacac tccaaccacg agggaagtgg ttggaacaag ccgggaatct      5940
     ggaggaggga acattggttc ttctccatga tcctcaaagc ccccccttaa aatggactcg      6000
     aggccgagtc ttacgtacat ttccagggaa agataacaac acaagagtag tagaagtcaa      6060
     aactcccaac ggagtgtaca aaagaccggt ggtaaaatta tatgctctgc cattgggtag      6120
     ttctcaatag cgaatttaac cttctcgtaa caaatgaaat ctactctatg ttcaagatga      6180
     gcaataacga gaagtctgta tctactcacc catctcccac atcgaccagt gtgtcttccc      6240
     tcccctccgc tccatcgacc agtgtgtctt ccctcccctc cgctccatcg accagtgtgt      6300
     cttccctccc ctccgctcca tcgaccagtg tgtcttccct cccctccgct ccatcgacca      6360
     gtgtgtcttc cctcccctcc gctccatcga ccagtgtgtc ttccctcccc tccgctccat      6420
     cgaccagtgt gtcttccctc ccctccgctc catcgaccag tgtgtcttcc ctcccctccg      6480
     ctccatcgac cagtgtgtct tccctcccct ccgctccatc gaccagtgtg tcttcccctc      6540
     cctccgctcc atcgaccagt gtgtcttccc ccccctccgc tccatcgacc agtgtgtctt      6600
     cccccccctc cgctccatcg accagtgtgt cttccccccc ctccgctcca tcgaccagtg      6660
     tgtcttcccc cccctccgct ccatcgacca gtgtgtcttc ccccccctcc gctccatcga      6720
     ccagtgtgtc ttcccccccc tccgctccat cgaccagtgt gtcttccccc ccctccgctc      6780
     catcgaccag tgtgtcttcg tgtgtcttcc ctcccctccg ctccatcgac cagtgtgtct      6840
     tccctcccct ccgctccatc gaccagtgtg tcttccctcc cctccgctcc atcgaccagt      6900
     gtgtcttccc tcccctccgc tccatcgacc agtgtgtctt ccctcccctc cgctccatcg      6960
     accagtgtgt cttccctccc ctccgcccca tcgaccagtg tgtactcccc tcccgcccct      7020
     caccgtttgg atctctcctc taatttcctc ttacaagcaa cattgcaatt cgatcaatgg      7080
     ttctacggga accaggttgc agttatctca catctccaaa gggagaaaga taaggagact      7140
     tcaaacaaac agttgtgatt gttgctctat cctttacgtg tatcccgttc ccttccctta      7200
     cccccccttt tttctgtgtt cacagtgact gagcaacaga actcaaggaa accgccattg      7260
     cggaccacca ttaccaaaat tttggaaaaa aacacttgcg atatcctcga ccatcctttg      7320
     cggccaccgt tcgtaaagtg tacaaatggt cactttgtat gcggatcatg tcgtccacag      7380
     ttgacgaatg acgaatgtcc ttactgtaga gtaccattgt caacggttat aaaggatcgt      7440
     attttggacg agattttctt tgctgttcat ccaacttttg gttcagatgc cccagaacca      7500
     ccattaggcc ggggggccaa caggtcattg agtgcaaccg ctggaccctc aagactgcca      7560
     gggggcaggg gatatctcct ctcccagttg ggacaggtag cctcttctcc accacttcca      7620
     ggacggggga gacaattagg ccaatctcca agtcagaatc tccaacggac aattgggaga      7680
     agtctgattg aagcagcatt cgaggagtcg ctgtggaaca cattggatat tgacgacgcc      7740
     gggaatttat ttgcacgagt tccagtgcgt agatgagtag tggttcggga cccctgcctc      7800
     cggggctcgg gttgtctcag ctgcgtcagt agggcgggtc atcctactcg tcttgatccc      7860
     ttcggggttc aaggcgggcc ggga                                             7884
//
ID   BEL-7_BTa-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 572-572 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 243 BP; 56 A; 47 C; 50 G; 90 T; 0 other;
     tgttcccgcc attaagactt atcagctggg acggcctggg ccacggtgga aggggttacc        60
     atggaactgg aagtttttta gtttttggtc ttaactttct cagtcagaga aaaaaagttg       120
     tagaagaaaa agtttggttt tctgtcgatc ctgtctttat ccctgtcttt atcgctgtct       180
     ttatccctgt ctttataaag cctttatccc ttctacaaag tgagttattc ttgatattat       240
     tca                                                                     243
//
ID   BEL-7_CoFl-I repbase;    DNA;    INV; 2134 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-7_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2134
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2314-2314 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..2036
FT                 /product="BEL-7_CoFl-I_1p"
FT                 /note="DUF1759 and retropepsin."
FT                 /translation="MADVKELKILFKRQQELYKSISNAYENLKKRGKDKFT
FT                 RAIIESRIQQLRRNWDDFKDTHLRILNIAPDNTKDIGYFDENSYEIAEEAY
FT                 LDSAANLAEQLGKLPASPASDPAPVPPANSRNLPSIAVPTFSGHFNDWLEF
FT                 KDLFSAIIVNDSRLSNVEKLQHLKTHVQGEAAELLRTIQVIDANFEAAWKR
FT                 LEDHYANKRRLVAALTRDLLAAPAVSNESPLELKALLSGTVNALAALKQLK
FT                 RPTDQWDDLVVAVTARKLDARTFREWESSLSSTHEPPALETLVRFIEQRIS
FT                 MLEIVASSTEKATRKKDKTASSTSHAYAAFTEKCRFCQGEHFILRCADFKA
FT                 KSPHERKQFVEAKSMCYNCLGAHKLASCKSSKRCLTCNGHHHTLLHENPAT
FT                 TVHLASSAWPATLTKGSRVSCHWMASPDSPNTTLLPTALVRIQGPDGRTLI
FT                 ARAMLDNCSQRSFVAKSLLSKLRQEYEEASMEVIGIGGIKTPRVHGKTYLT
FT                 LASMVSEGKLTCEALVLSLISSYRSGNFKLPGDWKYLQGLELADDFRADLT
FT                 EIELLLGADVLPRVLQEGLRIGLPGTPMAQRTIFGWTLSGPLHY"
XX
SQ   Sequence 2134 BP; 539 A; 571 C; 526 G; 497 T; 1 other;
     atttggtagc agagcgtggt tccagggacc gacggtcagt gcaggagtgg atatgtgcta        60
     gtgctcagtg aagccttgaa ttttgccttg accatttgat gccgtgtagg tgaacgcgct       120
     ctcgcgaaac tgcagtagtg agtcattcaa ggaatcagag tgtgtgcatg ctctccgtgc       180
     ttgaatttgc caaggcgggt ggccgttagc tgcccaacac tcagccctat tatcaagcgc       240
     ttcatcgcga catcgactgc ktcatggcag acgtcaagga actcaaaatt ttatttaagc       300
     gtcaacagga gttgtacaaa agcatcagca atgcttacga aaacctcaag aagcgcggca       360
     aggataagtt cactcgtgca atcatcgaga gccgtataca gcaactacga agaaactggg       420
     atgacttcaa ggacactcat ctcaggattc tcaacattgc tccagacaat actaaggaca       480
     tcggctattt cgatgaaaac agctacgaaa tcgccgaaga agcttacctc gattcggcag       540
     ctaatttggc tgaacagctc ggaaaacttc ctgcatcgcc cgcatcagac ccagctcctg       600
     ttccgccagc taactctcgc aacctgccgt ccattgctgt gcccacattt tccggacatt       660
     tcaacgactg gctcgagttt aaggatctgt tctctgcgat catagtcaac gattctcgac       720
     tttccaacgt cgagaagctt cagcacctca agacgcatgt gcaaggcgag gcggctgaat       780
     tgttgaggac gatccaggta atcgacgcca acttcgaggc tgcatggaaa aggttggagg       840
     atcattatgc aaacaagcgg cgcttggttg ccgcgctaac tcgcgatttg ctagccgcgc       900
     cggctgtaag caacgaatcg ccgctcgaac tcaaggcatt gctcagtggc actgtaaatg       960
     ccttggctgc acttaaacag cttaagcgtc cgacggacca gtgggatgac ttggtggtcg      1020
     ctgttacagc tcggaaactc gacgctcgaa ctttccgaga atgggagtca tcgctcagca      1080
     gtacccacga gcctcctgca cttgaaacgc tcgtgcgttt cattgaacaa cgcatctcga      1140
     tgctcgagat cgtcgcgtct tctacagaga aggcaacacg gaagaaggac aagacggcgt      1200
     cttctacttc gcacgcatat gccgccttta cggagaaatg ccgcttctgc caaggtgagc      1260
     atttcatact acgctgtgcc gatttcaaag caaaatcgcc acacgaacgc aaacagtttg      1320
     ttgaggccaa gagcatgtgc tataattgcc ttggtgctca caaactcgca agctgcaaat      1380
     caagcaaacg atgcctaact tgcaacgggc atcaccatac gctgctgcac gagaatcctg      1440
     ccactacagt gcatcttgca tcttctgcat ggcctgctac actcacgaaa gggagtcgcg      1500
     tatcctgtca ttggatggca tcgccagact ctccaaacac tacgctgttg cctactgcgc      1560
     tcgtccgaat tcaaggcccg gacggacgca cactcatcgc tcgtgccatg ctcgacaact      1620
     gctctcagcg atcctttgtt gcaaagagcc tgctaagtaa acttcgccag gaatatgaag      1680
     aggccagcat ggaggtcatt ggcatcggtg gcatcaagac tccgcgagtt catggaaaaa      1740
     cttaccttac tctcgcctcc atggttagcg aggggaagct cacgtgcgaa gctctagtgc      1800
     tctcgctcat atccagctac aggtcaggaa acttcaagct tccaggcgac tggaagtatc      1860
     tacagggttt ggagcttgca gacgactttc gagccgatct gacggaaatc gagttgctgc      1920
     taggagctga tgtgcttcca cgagttcttc aagagggctt acgcatcgga ctacctggga      1980
     cacccatggc ccagcgcacc atattcggct ggacgctttc cggtccatta cattattgac      2040
     attttcaaaa tacagactct aagttcgttt tacataagtg cagtgctaat tgttaatact      2100
     ccgtttaccc cgaaccgtag tatggcgggc ggta                                  2134
//
ID   BEL-7_CoFl-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-444
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2284-2284 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 444 BP; 116 A; 101 C; 68 G; 159 T; 0 other;
     tgttcagttt tgtacctgaa tatttgccga caaacctttt ctaaatttaa attgcgtcac        60
     gttcgttatc cttatattaa agttgaagta attttccgat catacgcctt tatcatcgcg       120
     tacatttgca atgcccaaga gaccgtttta cctttactct tgtaccttta tttatcaatg       180
     tactagaagt ttctacttta acttttgtct ctataaatat tgctctgcga gcatagtaag       240
     ttagttagcg cgccgcggtg gcagagaaag cttctctccg cttgccttca cttgagcaca       300
     ttttcataat ttaagcactg taaatatatt gtataaattt ttattgcaca tttgcgttac       360
     atttattttc cgccgtaaac cacttccacc tccacacgac tgaactggat tgggagcagc       420
     ataaaacccc ttccctcgtg aaca                                              444
//
ID   BEL-7_CQ-I  repbase;    DNA;    INV; 5755 BP.
XX
AC   AAWU01032418;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_CQ_;
KW   BEL-7_CQ-LTR; BEL-7_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5755
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 167-167 (2011).
XX
DR   Genome; AAWU01032418; Positions    2114    7868.
XX
CC   Positions [4777-5367] - Integrase core
CC   'AAACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           377..1792
FT                 /product="BEL-7_CQ-I_2p"
FT                 /translation="MNLEVQEEEHESGDDTKKEVTPVKKQLEEQRRKQKIR
FT                 EMEERLKVLVQQRGAVKGKLTRLKTALTQRTGTINPNLRKVNFLKMHLETV
FT                 KACYSEYNGFQNEIYALGLSEDQKKVHESQYEEFEMLHNMLVVELNDLLDE
FT                 VSKPVANAALVPVAAANAALQNYLPPLSVPLPKFDGTYETWYSFKSMFQNI
FT                 MARYTNEAPAIKLYHLRDALIGKAAGVIDQEMINNNDYDAAWAVLEELYED
FT                 KRAIIDRHIDNIFALPKITRDNAAELRKVIDICVKNTEALKKVNLPVDGLG
FT                 EQMVVNLLASRMDKDTRRAWEATQKAGVLPTYEATITFLKEKRRIADKLEQ
FT                 NSESDKVKPQRSVTKTKTLVVASEAKCSVCNQDHEVIKCEQFKLKSVNERY
FT                 SHLRKHGLCFNCLRKVHVDELVPEVQQAAPYPASHRRAKEAGTRLPTRRQQ
FT                 LPRIPAQKAALNPFHQPRRDRPSLAKV"
FT   CDS           2200..5727
FT                 /product="BEL-7_CQ-I_1p"
FT                 /translation="MLLGAGIFWDLMKAKRITLAANLPSLRDTELGWVVGG
FT                 VMSECTPVIARTFCTVNEDEELNKLLNRFWEIEGVEDLRRPVTSTAEESLE
FT                 HFRSTYSRKPDGRIVVRLPFNERKSDLGASRDMAIRRFLNLERRLDQQPDL
FT                 KREYAKFIHEYEQLGHMKEVDVGPSEPPGSAYYLPHHCVLRPSSTTTKLRV
FT                 VFDGSAKTSTGVSINDALKVGPTVQNDLLSILLNFRCYRYVFTTDIPKMFR
FT                 QIELHPEDTPYQRILWRDDRSQLLKVFELKTVTYGLASSPFHATMALNQIA
FT                 EDGVKEFPLASAALKKSFYVDDGLCGAQSVEDARLLSRELRKLLNTGGFDA
FT                 HKWCANDPAILEDIPEELWGTTFDLKDAAAKSVVKTLGVAWNASQDWFTFS
FT                 VLPPEEETKPLTRQKVLSEIAKFFDPLGLAGPVVTTAKLILRKVGTLKNIG
FT                 WLDPVPESVANEWRRFRKQLPALNDFRVSRCVYDEAAERVELHGYSDASDD
FT                 AYGASVYARNIYPDGEITMRLICSKSKLLPKKVKNVPKELSTPKGELEGAL
FT                 LLAELVDKLVNVVDVCFDSVNLWCDSQVVLSWIAKKPDDLELFMANRVRKI
FT                 QQLTSKYRWGYIPTDDNPADLISREVMPQNLIQRVIWKDGPVSMNNRTIEV
FT                 VQPPLLDGADLPGLRSTKCLALAAPIQRLRIFDKLGDFRRLLRSMSLVVRF
FT                 ANYIISGRKVVVKGLPTSEERAAALKLILRLVQRETFQTELLALKENHSHR
FT                 LRGLNPFIDPDDGLLRVGGRIKQAFVPYDSRHQILMPAKHPVTESFIRYEH
FT                 VKNLHVGQKGLLALIRQRFWPMNVKTTIRKVIRGCVTCFRVDPTKTVQLMG
FT                 DLPSYRVQPAPAFFNTGVDFAGPFLIKSLTAARRPMMTKGYVFLFVCMSTR
FT                 AIHLELVSSLTTEGFLAALRRFTGRRGLVNKMYSDNATNFAGSETELERLA
FT                 KLFAEEQHIEQVEEFCSSRGITWSFIPPRSPHFGGIWEAGVKSVKHHLKRV
FT                 VGNQKLTFEELTTVLVQIEAVLNSRPLTPCSNDPNDLTAVTPAHFLIGREM
FT                 QAVPEPSYLQLKQSTLSRWQHVQAMQQQFWKRWIAEYLPELQNRQKWFKTT
FT                 KIQPGALVLISDPNAPPMQWQLGRIIALHPGKDDVTRVVTLRTAKGECKRG
FT                 VSEICLLPLDQETTEED"
XX
SQ   Sequence 5755 BP; 1402 A; 1497 C; 1770 G; 1086 T; 0 other;
     ttttggtcct tcatggccgg atagctgaag tagtgtccgg gagtgaaaag tgacggatta        60
     accggtgggg aaatccgaat cgaactttcg cgagcgaagt gtttgcgagt gaaggcgtgg       120
     ggcgcggggc gtagcaccca cgcgcgaaaa agtgctttat tccggaagcc agtggacggg       180
     cggctgtaga gcagtccgaa aagagacggt tccggaagaa ataaagtgcg aaaaccgacc       240
     cttggggtcc gcgtgtgaaa aaaactgcga caaaagaaac ggagtggttc gtggggcgta       300
     gtagccacga ggcgagaaag actcttccgg cttggggcgt agcacccttc ttgtgaaaaa       360
     aagagcatgg aaaagcatga atctggaagt gcaagaggaa gaacacgaaa gcggtgacga       420
     cacgaaaaaa gaagtgaccc cggtgaagaa gcaactggaa gagcagcgtc ggaaacagaa       480
     aatccgagaa atggaggaaa ggctgaaggt gctcgttcag cagagagggg cagtgaaagg       540
     gaagctcacg cgcctgaaga ccgctcttac gcaacgtacc gggacgataa atccgaactt       600
     gcgtaaagtg aacttcctca agatgcacct ggaaactgtc aaggcctgct actccgaata       660
     caacgggttc cagaacgaga tctacgcgct gggcctctcg gaagatcaga aaaaggttca       720
     cgagagccag tacgaggagt tcgagatgct gcacaatatg ttggtcgtcg agctcaacga       780
     tttgttggac gaagtgtcca aacccgtagc gaatgctgcc ctggttccgg ttgctgccgc       840
     gaacgccgct ttgcagaact acctcccgcc gttgagtgtg ccactcccga agtttgacgg       900
     tacctatgag acgtggtact cgtttaagtc catgttccaa aacatcatgg cacggtacac       960
     caacgaggca ccggcgatca agctgtacca tctccgggac gcgctgatcg gcaaggcagc      1020
     cggcgtcatc gatcaggaaa tgatcaacaa taatgattat gacgcggcgt gggctgtctt      1080
     ggaggagctg tacgaggaca aacgtgcgat catcgatcgg cacattgaca acatcttcgc      1140
     tctgccgaag atcacccgcg acaacgccgc agagctccgg aaggtcattg acatctgcgt      1200
     gaagaacacc gaagccctga agaaagtgaa cctcccggtc gacggactgg gggagcagat      1260
     ggtcgtgaac ctgctggcct ccagaatgga caaggacacg cgcagagcat gggaagcaac      1320
     ccagaaggcg ggtgtgttgc cgacgtacga ggccacgatc acgttcctga aggagaagcg      1380
     cagaatcgcg gataagctgg agcagaacag tgaaagtgat aaagtgaaac cgcaacgttc      1440
     ggtaacgaaa acgaagacgc tggtggtggc cagcgaagca aagtgttcag tgtgtaacca      1500
     ggatcacgaa gtgattaagt gtgagcagtt caagctgaaa agtgtgaacg agaggtacag      1560
     ccacttgcgg aagcatggcc tgtgctttaa ttgtctgagg aaggtgcacg tcgacgaact      1620
     cgtgccagaa gtgcagcaag cggcaccata ccctgcttca caccgacggg ccaaagaagc      1680
     aggaacccgg ctgccaacac ggcgtcaaca gttgcccaga atcccagcgc agaaggccgc      1740
     actcaatccg ttccaccagc cacggcggga tcgtcccagt ctggcgaagg tctgacacta      1800
     tgcaccacat ccgaggcccc aaggaagcaa attctactct cgacggctgt agtgctggtt      1860
     tacggcgccg gcagcgtacc ctacctgtgt agggcgctga ttgactcgtg ttcacagaac      1920
     catttcgtga ccgagcgttt cgctaacctg ttggcgagca aaaaggaacg ggctgattac      1980
     caggtcagcg gattgaacgg gggaacgacc agaatcagtc acctggtgcg cgcgaaggtc      2040
     aagtcccgcg ttggcaactt tgctgccgac ctcgagctcc tggtggcccc gaagatcact      2100
     ggcgacgtgc cggtgaagac gatcgacatc gctgggtgga acttgccacc agacgttgaa      2160
     cttgcggatc ccaactttaa ccagcgaggc cgagtcgaca tgctgctcgg agcgggcata      2220
     ttctgggatc tcatgaaggc aaagagaatc acgctggcgg cgaacctccc atcgctcaga      2280
     gacacggaac tgggctgggt ggtcggtggc gtgatgtcag aatgtacacc agtgattgca      2340
     cgtacgttct gcaccgtgaa cgaggacgaa gagctgaaca agctgctgaa ccggttttgg      2400
     gagattgaag gagtcgaaga tctgcggcga ccggtgacgt cgacggctga agagagtctc      2460
     gagcacttcc ggagcacgta cagtcggaag ccagacggga ggattgttgt tcgtcttccg      2520
     ttcaacgagc gcaagagtga cctgggcgcg tcacgagaca tggcgatccg tcggttcctg      2580
     aaccttgagc ggcggctaga tcaacaacct gacctgaaac gagagtacgc caagtttatc      2640
     cacgagtacg agcagcttgg acacatgaag gaagtcgatg tcggaccgtc cgaaccacct      2700
     ggatccgcgt actacctgcc gcatcactgc gtcttgcggc ccagcagtac aacaacgaag      2760
     ttgagagtcg tgtttgacgg ctcggcgaaa acgtcgactg gagtgtccat aaacgacgca      2820
     ctgaaggttg gccccacggt acaaaacgat ctgctgtcga tcctgctgaa cttccgctgc      2880
     taccggtacg tcttcactac ggacatcccg aagatgttcc gccagattga gctgcacccc      2940
     gaagacacgc cgtaccagcg aatactgtgg cgcgacgacc ggtcgcagct gctgaaggtg      3000
     tttgaactga agacggtgac ttacggcctg gcgtcatctc cgttccacgc gacgatggcg      3060
     ttgaaccaga ttgcagaaga cggcgtgaag gagttcccgt tggcgtctgc agcgttgaag      3120
     aaatcgttct acgtggacga cgggctctgc ggagcgcaga gtgtggagga tgcccgattg      3180
     ctgagtcggg aactgcgcaa gctgctgaac accggcggct tcgacgcgca caaatggtgc      3240
     gcgaacgatc cagccattct ggaagatatc ccggaggagc tctggggtac gacgttcgac      3300
     ctgaaggacg cggctgcaaa gtcagtcgtg aagacgctgg gtgtggcgtg gaacgcgtcg      3360
     caggactggt tcaccttcag cgtgctgcca cccgaagagg agacgaagcc gctgacgcgg      3420
     cagaaagtac tcagcgaaat tgccaaattc tttgatccac ttggcctggc tggtccggtg      3480
     gtgacaactg cgaagctgat cttgcggaag gtcggcactt tgaagaacat cggctggctg      3540
     gatcccgttc cggagagcgt tgccaacgag tggcgtcgat tccggaagca gctaccagca      3600
     ttgaacgact tccgggtctc ccggtgcgtc tacgatgaag cggcagaacg cgtggaactc      3660
     cacggttatt ccgacgcgtc ggacgatgcg tatggcgcca gcgtgtacgc acgcaacatc      3720
     tacccggacg gcgagatcac gatgcggttg atttgcagca agtccaagct cctcccgaag      3780
     aaggtcaaga acgtcccgaa agaactcagc actccaaaag gcgaacttga gggtgcgctg      3840
     cttctcgctg aactggttga caagttggta aacgttgtcg atgtttgctt cgattcggta      3900
     aacttgtggt gcgactcgca agtggtgctg agctggatcg cgaagaagcc tgatgacctg      3960
     gaacttttta tggccaacag ggtgaggaaa atccagcagc tgaccagtaa gtaccggtgg      4020
     ggatacatcc cgacggatga caatcctgcc gacctgattt cgagagaggt gatgccccag      4080
     aacttgatcc agcgggtcat ttggaaagac gggccggtgt cgatgaacaa tcgcacaatc      4140
     gaggttgtgc aaccccctct tctcgacggc gcggacctcc cgggattgcg atccacgaag      4200
     tgtctggcgc tggcggcgcc gattcagcga ttgcggatct ttgacaagct cggagatttc      4260
     cgccgactgc ttcgcagcat gagcctggtg gtgcggtttg cgaactacat catctcagga      4320
     aggaaggtgg tggtgaaggg cttgccgacg agcgaggagc gcgcggcggc gctgaagcta      4380
     atcctgcgct tggtgcaacg agagacgttc cagaccgagc tgttggcgtt gaaggagaac      4440
     cactcgcacc gtctgcgagg actgaacccg ttcatcgatc ctgacgacgg ccttctgaga      4500
     gttggcggtc ggatcaaaca agctttcgtg ccgtacgaca gccgacacca gatcctgatg      4560
     cctgccaaac accctgtcac ggaatccttc atccgctacg agcacgtaaa gaacctccac      4620
     gtgggccaga agggcctgct tgcgctgata cgccaacgct tttggccgat gaacgtcaag      4680
     acgactatcc ggaaggtgat tcggggatgc gtgacgtgct ttcgagtcga tccaacgaag      4740
     acggttcagc tgatgggaga tctcccgtcg taccgcgtac aacccgcgcc ggcgttcttc      4800
     aacactggag ttgatttcgc tgggccgttc ctgatcaagt cgctgaccgc agcacgaagg      4860
     ccgatgatga cgaaggggta cgtgttcctc ttcgtgtgta tgagcacacg agccatacac      4920
     ctggagctgg tctcgagtct gacgacggag gggtttctcg ctgccttgcg gcgtttcact      4980
     ggacggcggg gcctggtgaa caagatgtac tcggacaacg cgaccaattt cgctggatcg      5040
     gagacagaac tcgagcgact cgccaagttg tttgcagagg agcagcacat cgagcaggtg      5100
     gaggaatttt gcagcagtcg cggaatcacc tggagtttca tcccgccgcg cagtccgcat      5160
     ttcggtggga tctgggaagc tggggtaaaa tcggtcaagc atcacctgaa gcgagtagtc      5220
     ggcaatcaga aactcacctt cgaagaactg accaccgtgc tggtgcagat agaagccgtg      5280
     ctgaattcgc ggccgttgac gccgtgctcc aacgacccga acgatttgac cgcagtgacc      5340
     ccagcccact ttctcatcgg acgagaaatg caagcggttc cagagccgtc gtatctccag      5400
     ctcaagcagt cgacgttgtc ccgctggcaa cacgtgcagg caatgcagca gcagttctgg      5460
     aagaggtgga ttgcggagta tttgccggag ctgcagaacc gtcagaagtg gttcaaaacc      5520
     accaagattc aaccgggcgc tttggtgctt atcagcgacc cgaatgctcc gccgatgcag      5580
     tggcaacttg gtcggattat cgcactgcat cccggtaagg acgacgtcac cagggtggtg      5640
     acactacgga cggcgaaggg cgaatgcaag cgtggcgtgt cagagatatg cctgcttccg      5700
     ctggaccagg agacgaccga ggaggattga aatgcaccat ttcaatgggg gagga           5755
//
ID   BEL-7_CQ-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   AAWU01032418;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_CQ_;
KW   BEL-7_CQ-I; BEL-7_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 168-168 (2011).
XX
DR   Genome; AAWU01032418; Positions    1909    2113.
XX
SQ   Sequence 205 BP; 55 A; 39 C; 34 G; 77 T; 0 other;
     tgttagtcgt aaaataaggg ttttcagttt agcgtgtaca acttttctat ttttttgttc        60
     ccacctttaa ctgtcatctt gaaataaacc taccttaagt ttttactttt cgctcgcaca       120
     gaaagcacgc gcgttttttc tctctgtcga aaatttgaat tgaaaaatac agtccgcttg       180
     aaattcgcga agtttttgga gaaca                                             205
//
ID   BEL-7_DAn-I repbase;    DNA;    INV; 4468 BP.
XX
AC   AAPP01016297;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DAn_;
KW   BEL-7_DAn-LTR; BEL-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4468
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016297; Positions    7342    2875.
XX
CC   Positions [3532-4074] - Integrase core
CC   'CTCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           745..4434
FT                 /product="BEL-7_DAn-I_1p"
FT                 /translation="MTSPNFMETFIARQTIKQELPNFAGDPLEWPLFLSEF
FT                 ENSTEMCHFNNCENINRLRKALTGPAKECVRSLLVLPENVNGIIDILKERF
FT                 GNSDFIVQKLIENIRGIPLIKDDKFERLINFYDTLTNLIHTLLACENIDQL
FT                 RNPLLFTEILEKMPMSKRVAFIEHIQGSKSVEPKIIQFHTWLGKKMKAVTT
FT                 LGYTQNKPKETTLTVSGQSHGTDNNKRNSFCHFCKQNNHYITTCENFKDLQ
FT                 IDMRWEYVTKNKLCISCLGKNHIMKDCKRKRPCKINNCNYTHSQLLHKDKT
FT                 ILQSNQQNSETSASLPKSETNCNINNSQSKVLLKVIPICLTGSKKTIETYA
FT                 LLDEASTITLIDEQLADELELDGPTQHLKMQWTNNETFEQADSKVVSVLIK
FT                 GKSPESKTYTLRKVKTVSVLNLPVQTLSVENIAENFKFLKDFTDCSYINAV
FT                 PKILIGQDNWSLIVSRKLKYESHNGPVISKTSLGWVVHGNIESNKQVPQSD
FT                 YSFHISHVSTKENSMDDLDILHNLVKSYWSIENEMTNKFDCPISVDDKKCL
FT                 DIVNKTLKRVDYHFQCGLFWKDSDIQLPESYKNAYSRLLICERKIDNNREY
FT                 GRKYKEVIESYIEKGYLRKLGLSDQKIESPLIFYLPHFSVHNSNKPDKFRI
FT                 VFDAASKSHGYSLNDFLLPGPDLFNQLTTVLINFRKSKIAFVGDIKEMFLQ
FT                 IKVQPSDRHAQRILWRGDDRQRDPDVYELQVLFFGAKCSPSIAQQVMNRNA
FT                 QDFQDKYPKACNDIIYNHYMDDYLGGTDDVCSAVQLIKEVTQIHSQGGFHM
FT                 CNWISNSPEVIAQLDNIKIQTEKTKNLTEERVLGLMWNYEKDTFTYNLNFA
FT                 KSYRDLLKLSRRPTKREVLKITMSVFDPLGFLSNLLITNKILLQLIWDSGI
FT                 GWDDSISDEHYEMWKTLCVALDRISEFSIPRKMTNFPIDDCDIQLHIWGVI
FT                 FTCMASRAVHLEIAEDLSANAFMHVFRQFGCRRGFPVEIYSDNGTNFKRAN
FT                 KNIQEIISNWSKDEMTQFLTTKSCTWHFNPPLSPHMEGAWERLIQSVKKYL
FT                 QFLLKERFPREYTLKTLFCEIEYMINNRPLLYMPSDSIDSNPLTPNDILIG
FT                 PNHTDSFYSFATEGDLKLLNMWKASQRLADLFWVKWRKEYRQYLLYSKKWT
FT                 KNEKAIEKGDIVLSMESDTPRNMWPKGIVIETYPSSDGRVRIVDVKIKNNI
FT                 YKRPIVKLVKLELKNENVTS"
XX
SQ   Sequence 4468 BP; 1656 A; 745 C; 836 G; 1231 T; 0 other;
     tttggtcatt caagccggat attacacaca taaacataaa cttgcaggta atcttaaaag        60
     tagcagcaac atttggtcct tcgaagccta caggacggca catggattta taaatatgga       120
     caaacttcta attgcgtcag ccaaaaattc ttggaaatta tttgtgttca cgatcagtgc       180
     acactaacat atgtgcacac aagacatgcg cattgacgac gaataacgga atttggcaaa       240
     agaagattct agagaagtgt gacggcaagc aacgacgaca aaattatggc gccagcactt       300
     tcgaagaaaa atcaaaaaaa atgcgttgca gacgagcaac aatattgtga cacgccaaga       360
     ccaacaaagt cttcaagtcc aaaatcaatt caactggaga atacaataaa gccaacgaca       420
     tcaacaccac aggaagatat tggacatgtg gcagacagcc acataaaagc caggacagca       480
     agttcttcaa agcagcagag gattgaggct gaaatagacc ttttaaagag aaagcaggaa       540
     cttcaagaac agaggacagc attggagatc cgagagaaac aattggaact ggatcaacat       600
     ctttacaatt aacaatgtag tgacagcagg tttgaggagc cattagagga cagcgtacaa       660
     catgaacatc aacgtacacg tgagtgaatc gagcaaaatc aaactaaggt agaattagta       720
     aacgaacaaa actataattc taatatgaca agcccgaatt tcatggagac ctttatagcc       780
     agacagacta taaagcaaga gcttccaaac tttgcaggtg atcctttaga atggccttta       840
     tttttatcag aatttgaaaa tagtaccgaa atgtgtcatt ttaacaattg tgaaaatatt       900
     aatagattaa gaaaggcatt aacagggcca gctaaagaat gtgtaagaag tctcttggtg       960
     ttaccagaaa atgtaaatgg aattattgat attcttaaag aaagatttgg aaattcagac      1020
     tttattgttc aaaagctaat tgaaaatatc agaggtattc cattaattaa agacgacaaa      1080
     tttgaacgac taattaactt ttatgataca ttaacgaatc ttattcatac actattagcc      1140
     tgtgaaaata ttgatcaatt acgtaacccc ttgttattta ctgaaatatt agaaaaaatg      1200
     cctatgtcta aacgagttgc cttcatagaa cacatacaag gaagtaaatc tgttgaaccc      1260
     aaaattatac aatttcatac atggttagga aaaaaaatga aagcggtcac aacattagga      1320
     tatacccaaa ataagccaaa agaaaccaca ttgacagttt caggacagtc tcatggcaca      1380
     gacaacaaca aaagaaattc attttgccat ttttgtaaac aaaataatca ttatataaca      1440
     acttgtgaaa attttaagga cttacaaatc gatatgcgtt gggaatatgt gacaaaaaat      1500
     aaattatgta tatcatgcct gggaaagaac catataatga aagattgcaa aagaaaaaga      1560
     ccctgtaaaa ttaacaactg taattatact catagccaac tcttacacaa agacaaaact      1620
     attttacaaa gtaatcaaca gaattcagaa acttcagcgt cacttccaaa atcagaaacc      1680
     aattgcaaca taaataatag tcaaagcaaa gttttactta aagtgatacc gatttgtctg      1740
     acaggatcaa agaaaaccat tgaaacttat gctcttttgg atgaggcttc cacgataact      1800
     ttaattgacg aacagttagc tgacgaatta gaactggatg gtccgactca acacttgaaa      1860
     atgcaatgga caaacaacga aacatttgaa caggcagact caaaagtagt aagtgtactt      1920
     atcaaaggaa aaagcccaga atcgaaaacg tatacattac gaaaagtgaa gacagtatca      1980
     gtcttaaatt taccagttca aacactttcc gttgaaaata tagccgaaaa cttcaagttc      2040
     ttaaaagact tcactgactg ttcatacata aacgccgttc ccaagattct gattggacag      2100
     gacaattggt ctctcattgt ttctaggaaa ttaaagtatg agtctcataa tggtcctgtg      2160
     atcagtaaga cttctctggg ttgggtagta catggaaaca ttgaatcgaa caaacaggtt      2220
     cctcaatctg attattcatt tcacataagt catgtaagca caaaggaaaa tagtatggac      2280
     gacttagaca tattacataa cttggtaaaa tcttattggt cgattgaaaa tgaaatgaca      2340
     aataaatttg actgtccaat atcggtagac gacaaaaaat gcttagatat tgttaacaaa      2400
     accttaaaac gggtggatta tcattttcag tgtggactat tttggaagga ttcagacata      2460
     caactaccag aaagctataa gaatgcgtac tccagattat taatctgtga gcgaaagatt      2520
     gacaataata gggaatatgg tcggaaatat aaagaggtaa ttgaatctta tatagaaaaa      2580
     ggatatctgc gcaaattagg tttatctgat caaaagattg aatccccact aatcttttac      2640
     ctgccacatt tcagtgtgca taatagcaac aagccagata aatttagaat cgtttttgat      2700
     gctgcatcaa aaagtcacgg ctattcatta aacgattttc tattgccagg tcccgatttg      2760
     tttaaccagt tgaccacagt tcttattaat ttccgaaaat ccaagatcgc tttcgtcggc      2820
     gatattaagg agatgtttct ccaaattaaa gttcagcctt ctgacagaca tgcacaacga      2880
     attttatggc gaggtgatga tcgacaaaga gaccctgacg tttatgagct acaggttttg      2940
     ttttttgggg cgaagtgtag tccgagtatt gcacagcaag ttatgaatag aaacgctcag      3000
     gactttcaag acaaataccc aaaagcatgt aacgacatca tttacaatca ttacatggat      3060
     gattatctag gtgggacaga tgatgtttgt agtgcagttc aattaattaa agaggtgacg      3120
     caaattcata gccaaggtgg ttttcatatg tgcaactgga tatctaattc accagaagta      3180
     attgcacaat tggacaatat caaaatacag actgaaaaaa caaaaaattt aacagaagaa      3240
     cgagttttag gtctaatgtg gaactatgaa aaggacacat tcacatataa tttaaatttt      3300
     gctaagtcat accgtgattt attaaaattg tctagacgcc ccacaaagcg agaagtactg      3360
     aaaattacca tgtccgtatt tgatcctttg ggatttttgt ccaacttact aattacaaat      3420
     aaaattttgt tacaattaat ttgggacagt ggaattggtt gggacgattc cattagtgat      3480
     gagcattatg aaatgtggaa aactttatgc gtggcattgg atagaatcag tgagtttagt      3540
     atacccagaa agatgactaa tttccctata gatgactgtg acatacagct tcacatatgg      3600
     ggggtgatat ttacctgcat ggcgtctcga gctgtccatc tggaaattgc agaagaccta      3660
     tcagctaatg catttatgca tgttttcagg caatttggtt gcagaagagg ttttccagta      3720
     gagatttata gtgacaatgg gacaaatttt aaacgggcta ataaaaatat acaggaaata      3780
     atctctaatt ggtcaaagga cgaaatgact caatttttaa caacaaagag ttgcacatgg      3840
     catttcaatc cgccattgag tccacatatg gagggagcgt gggaaagact cattcaatcg      3900
     gtaaagaaat atttacaatt tttgttaaag gaacgttttc ctagagagta cactttaaag      3960
     actttgtttt gcgaaattga gtatatgata aacaatcgcc ctcttttgta tatgccttca      4020
     gactctattg actcaaatcc cttaacgcca aatgacatcc ttattggccc taatcataca      4080
     gattcatttt attcatttgc cactgagggt gatctgaagc tgttgaatat gtggaaggct      4140
     tcccaaagat tggccgactt attctgggta aaatggagaa aagagtatcg acaatatctt      4200
     ttatatagca aaaaatggac aaagaatgaa aaagctattg aaaagggcga tatagtttta      4260
     tctatggaat cagatacgcc tcgaaatatg tggccaaaag gaatagttat tgaaacctat      4320
     ccatctagtg atggccgagt tcgaattgta gatgttaaga tcaagaataa tatttataag      4380
     agaccaattg ttaaacttgt aaaattagaa cttaagaatg aaaatgtaac ttcttaagta      4440
     ttgccaaatg caatacttgg ggggagga                                         4468
//
ID   BEL-7_DAn-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   AAPP01016297;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DAn_;
KW   BEL-7_DAn-LTR; BEL-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-302
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016297; Positions    2874    2573.
XX
SQ   Sequence 302 BP; 104 A; 38 C; 59 G; 101 T; 0 other;
     tgttgcggaa caagttggca gctcaaatat agagttgtat ttatgaattt tatcgattta        60
     atttttgtga cgataaagaa atcgaacgtt tttttagttg ttaagttgag tgcgatgaag       120
     acacacgtcc ttttttatgt tgtataaatt ttgaaaacga ttgttaattt gaataaagtt       180
     atacttaaaa ttggagtgct gtaaaagttt actaacagga atatgcagac ggccggtcat       240
     tcaagccgga tattacacac ataaacataa acttgcaggt aatcttaaaa gtagcagcaa       300
     ca                                                                      302
//
ID   BEL-7_DAzt-I repbase;    DNA;    INV; 5775 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5775
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 772-772 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           505..5772
FT                 /product="BEL-7_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MAENHDIVHALTAAPSDVDFYRAKTRSIQRQLVEMNK
FT                 CLTEESILQFDEADLRARLKHHEAMSSEFNAAQSNLERLDLTVLDGDARSE
FT                 FANVFMQIDAKLNRELAAQQKVISANSTSMPHQFAGEGSLSTSTRRSRLPX
FT                 IELARFGGNYADWPNFIAMFKTVVDNEQELSNLEKFQYLRASLDGVALETI
FT                 RSIEISDLNYEIALELLTNRFDNKYHHFQAHVKAIFGLQGVEMGSARSLRQ
FT                 LSDKINAHLRAIRTLASTEEILDGFLIHIVTHRLDTRTREKWEEDLPSHKL
FT                 LAWKSLASFLEKRCRMMENQENDLVIEAPSHQVGEKTQKRIQNVLIASPNN
FT                 NNNNETISGCRFCGGRDHIITSCGMFLNLSPTLRYKEAKRMHLCLNCLRKG
FT                 HGLQQCKSGSCKQCHMKHHTLLHKAQNPGPSAVIVADVNLPQSQSSALVSC
FT                 SASPPYPPPIPNISNDYVLLATAIVLVKNRVGTLVPCRAILDSASQLNFIT
FT                 SRLAGHLQLKHRHSPISISGIGESSLSSNKAVEVVMQSQYATYSSSFTAVV
FT                 TRVITDYQPHYDINAAEWDIPKNINLADPWFFRSQRIDMLLGAGIFFDLLS
FT                 AGQLHLADXLPSLQNTKLGWIVSGGMAHTTNNRVTLATATGTHAPKEDEDS
FT                 LSDAVKRFWQIENCYSSEAAASSEDLLCERLFKENYSRLKSGQFSVRLLAT
FT                 AGFEALGDSFCLALRRFKGLEKRLSKNLPLKAQYSAFLQEYLDLGHMSLAS
FT                 NTIKLPQFFLPHHCVQKLDSSSTKLRVVFDGSAKTTSGLSLNDLLLAGPTI
FT                 QPKIFNILLRFRFFRIALCGDICKMYRCVRISHPDEYLQCILWRERPTDEI
FT                 KTYKLETVTYGTKPAAFLAIRAMHQLSYDEEASFPIGAPVVRRDFYVDDLI
FT                 SGGDTIEEVNVIRRQVKGLLQRGQFPIRKWCSNEPGVLEEEPAEDREKLLK
FT                 FHDGTDVAKALGLVWDPNSDNLLFNFSKIMPEGPPTKRTVLSSIARFYDPL
FT                 GLIAPILAKAKIFLQSLWKLDLGWDDALPEPLSAVWTDLMSQLRIVQNFKF
FT                 PRYVMLQNSSIQLHAFCDASMAAYGACVYIRSNVHENVASRLLCSKSKVAP
FT                 LKTLTIPKLELSAALLLAELVGSIKKNLASSCDIHCWSDSTIVLSWIREAP
FT                 SNFNVFVSNRIAQIQELTKEMKWHHVPTDLNPADVVSRGCSPEELLDLELW
FT                 LNGPSYLLSDSSEWPTQAPQIVDLPERRQNALVGSCVRDLSCDSKYTNSFG
FT                 KLQRVFGYIYRFISLRSREYVRSGAMLTVXDLTGGARLLIKTIQQVNFAEE
FT                 LTALKANRALPSKSKLLSLRPILGGDGLLRVGGRLQNANMVYDAKHPILLP
FT                 KGHPVTKAVITFYHERFLHAGPQALLASLRQKYWPVGGRKLVASVTSKCVR
FT                 CFRAKPSLAEHVMGDLPTDRVRPNPAFHTTGIDFCGPFYHKADVRNRPPCK
FT                 CYIAIFVCFSTKATHLEVVKDLTTASFIAALRRFISLRGKPRTLWTDNATN
FT                 FVGARNELLELKELFNSEPTVSVIASSCLNDGIDWKFIPPRSPHFGGLWEA
FT                 AVKSAKHHFYRVVGATVLTLEELRTLVYEISAILNSRPLYPISEDPDSLDV
FT                 LTPAHFLKGSSFTTFPEPDITHLNASRLNRWQQVSQMQQNFWRKWSMEYLS
FT                 LLQERSKWRDSTPNIMIGSVVLLKDENLPPLKWLLGRVEEAIPGKDGIIRV
FT                 AMVRTATGLMKRAVAKLAVLPVDSGSIESHVLSTGG"
XX
SQ   Sequence 5775 BP; 1522 A; 1341 C; 1382 G; 1526 T; 4 other;
     tctacctcta acattttggt gaccccgacg tgatctggag cctgtaccgc gatttaataa        60
     ttaaattgtc gatatcgttc gggcaattta ttattcagtc aagctgtttg tgcaaaaaat       120
     cggtgccaaa cacataaaac aaacacaaca aatacatgca aacgtactgc agtgatattc       180
     agtgacattg tgcattgccg gcatttgggt gcaaagttcg tctccatata gctctacata       240
     tatgtgttta tatacagaca aaatcgttct cataactgag tgaaagagct ccaccaagaa       300
     acggttttat tgcgcgtgta ttagtgcaag cgcagtgcaa agccctcaga agttgaggca       360
     aaggcagagc gaaatagaaa ccgtttgttt gtcgtcgctt agtttttgcg gcttgccggc       420
     gcatacaggg tgttgtattg ttccctttgc aaaccgtctt atagtgcttt tttgtgtata       480
     agccctgatc ttgtggcgtt gaacatggct gaaaatcatg atattgttca tgctctgacg       540
     gctgcgccta gtgatgtgga cttttacagg gccaaaacaa ggtctatcca gcggcagctc       600
     gtcgagatga acaaatgttt aacggaggag tccatacttc agtttgacga agctgacctg       660
     cgggctcgat taaagcacca cgaagcaatg agctccgagt tcaacgctgc acagagcaac       720
     ttggaaaggc tcgatctaac ggtgctcgac ggtgacgcgc ggtccgagtt cgcgaacgtt       780
     ttcatgcaga tcgatgcaaa actaaatcgc gagctagcag cgcagcagaa ggtgatcagc       840
     gcgaactcga ccagcatgcc tcatcaattc gctggagaag ggtcgctcag cacatcaact       900
     cggaggtcga ggctgcctma tatagaattg gctcgttttg gaggaaacta cgcagactgg       960
     ccaaacttca tcgcgatgtt taagacggtg gtggacaacg agcaagagct aagtaacttg      1020
     gaaaagttcc agtatcttcg tgctagccta gacggcgtag cactagaaac catacgctca      1080
     atcgaaatat ctgatttgaa ctatgagatt gctttagaac tgcttactaa tcgtttcgac      1140
     aataaatacc atcattttca ggcacacgta aaggcgatat ttgggttgca aggtgttgag      1200
     atgggatctg cgaggagtct tcggcaactc agcgataaga tcaatgctca cctgcgagcg      1260
     attcggactt tggcatcaac tgaggaaatt ttagatggat ttctcattca cattgtgacg      1320
     cataggcttg acaccaggac ccgtgaaaaa tgggaagaag acttgccgtc ccacaagctg      1380
     ttggcatgga aatcccttgc ttcgtttctg gagaagcgat gcaggatgat ggaaaatcag      1440
     gaaaatgact tggtaatcga agcaccaagc catcaggtgg gagaaaaaac gcagaagcgt      1500
     atccagaatg tccttattgc ctctcccaat aataataata ataatgaaac tatttctgga      1560
     tgtagatttt gcggcggaag ggaccacatt ataaccagtt gcggcatgtt cctaaatttg      1620
     tcccctactt tgcgctataa ggaagcaaag agaatgcatc tctgcctcaa ttgtttgcgc      1680
     aagggtcacg gcttgcagca gtgtaaatct ggaagttgca agcagtgtca tatgaaacat      1740
     catacgttgc tccacaaggc tcaaaacccg ggcccatccg cagtcattgt tgcagacgtg      1800
     aacctcccgc aatcgcaatc atcagcgcta gtttcatgct cagcctctcc accttaccct      1860
     ccacctattc ccaatatctc gaacgactac gtgttgctag ctacggccat agttttggtt      1920
     aaaaatcgtg ttggtacgct cgtcccatgt cgggcaatat tggattccgc atcgcagctc      1980
     aattttatta cgtctcgttt ggctggtcat ttgcagctaa aacatcggca ctcgcctatt      2040
     tcgatatctg gcattggaga atcgtctctt agttcgaata aggctgtgga agtcgtcatg      2100
     cagtctcagt atgctaccta cagttcctca ttcacggcgg tcgtaactag ggtcatcact      2160
     gactatcagc cgcactacga tattaatgct gcagaatggg acataccgaa gaatataaat      2220
     ttagctgacc cttggttttt tagatctcag cgaatcgata tgctgttggg cgctggtata      2280
     ttttttgatt tgctcagtgc tgggcagctg catttggctg atamgctgcc atcactccag      2340
     aacaccaaac ttggttggat tgtctctgga gggatggctc acaccaccaa caatcgagtc      2400
     actctggcta cggcaacagg aacccacgca ccaaaggaag acgaggattc tttgtccgat      2460
     gctgtaaagc ggttttggca gattgaaaat tgttactcat cagaggcagc tgcatcgagt      2520
     gaggatctac tttgcgagcg tttattcaag gaaaactact ctcgtttgaa aagtggtcaa      2580
     ttttccgttc ggctcttagc tactgctggt tttgaggccc ttggcgactc attctgtctc      2640
     gctcttcgtc gtttcaaagg tcttgagaaa aggctgtcaa aaaacctccc gctgaaggcg      2700
     caatatagcg cgttccttca agaatatctg gatttagggc acatgtcatt ggcttccaac      2760
     accataaagt taccgcagtt tttcttgccg catcattgcg tgcaaaaact cgatagcagc      2820
     agtacaaaac tacgtgttgt ctttgatgga tctgcaaaga ccacatctgg gctctccctc      2880
     aatgacttat tgctggctgg cccaacgatt cagccaaaaa tatttaacat actgcttcgg      2940
     tttcgatttt ttaggattgc actttgtgga gacatctgca agatgtatcg ctgtgtacgg      3000
     atttcacacc cggatgaata tttgcaatgc attctttggc gcgaaaggcc tactgatgaa      3060
     atcaagactt acaagctaga gaccgttacg tatggaacaa agcccgctgc ttttttggca      3120
     attcgtgcca tgcaccaact atcgtacgat gaggaagcgt catttcctat aggagcccca      3180
     gtcgtgagaa gggatttcta cgtagacgat ctcatatccg gcggggacac cattgaggaa      3240
     gttaatgtga tccgtcgtca agtaaaaggg ctcctgcaaa gaggacaatt tcctatacgc      3300
     aaatggtgct ccaatgagcc tggagtactt gaagaggagc ctgcggagga cagggaaaag      3360
     ctgcttaagt ttcatgatgg aacagacgta gcaaaggcct tggggctcgt atgggatccc      3420
     aactcggata acctactgtt caatttttcg aaaatcatgc cagaaggmcc acccaccaag      3480
     cgtactgtcc tgtcttctat agccagattt tatgatccgc tcggtttgat agcacctatt      3540
     ctagccaagg caaaaatatt cttgcagagt ttgtggaagc tggacttagg atgggatgat      3600
     gctctgcctg agcctctgtc ggcagtgtgg acggacttga tgtcgcaatt acgcatcgtg      3660
     caaaatttta aatttcctcg ttatgtcatg ctgcaaaact catccatcca attgcacgcc      3720
     ttctgtgatg ctagcatggc cgcatatgga gcttgcgttt acataagatc gaatgtccat      3780
     gagaatgtag catcccgctt gctttgctca aagtccaagg tagcgccttt aaaaacatta      3840
     acgataccca agttggaatt gtccgcggcg ttgctcttgg cggagctcgt cggaagcatt      3900
     aagaaaaatc tcgcatcttc ctgtgatatc cactgttggt cggattcaac tattgtgttg      3960
     tcttggatac gtgaggcccc atcaaacttt aacgtttttg tctccaacag aattgcacag      4020
     atccaggaat taaccaagga aatgaagtgg catcacgttc caacggatct taacccagca      4080
     gatgttgtgt cgaggggatg ctctccagag gagctattgg atttggaatt gtggctaaat      4140
     ggaccatcat accttttatc ggactcttca gaatggccta cccaagctcc acaaattgta      4200
     gatttaccgg agcgccgaca gaatgcattg gttggatcat gtgtaaggga cctctcatgt      4260
     gacagcaagt acacaaactc gtttggcaag ctacaacgtg tctttggtta tatttatcgt      4320
     tttatctccc ttcgaagcag ggagtacgtt cggtctggtg ccatgctcac tgtgsaggac      4380
     cttaccggcg gcgctcggct tttgataaag actatccagc aagttaattt cgctgaggag      4440
     ctcactgcac tcaaggccaa cagggcactt ccttccaaga gcaagctgct gtcattgcgc      4500
     ccgatactcg gtggtgatgg actgcttcgt gtaggcggaa ggctacaaaa tgcaaatatg      4560
     gtttacgatg caaagcatcc aatattgctg ccaaagggtc atccggttac gaaggcagtt      4620
     ataactttct atcatgaaag gtttttgcat gctggtccac aggccttact tgcatcgctt      4680
     cgtcaaaaat attggcccgt tggagggcga aaactagttg caagcgtaac aagcaaatgc      4740
     gtacggtgct ttcgggcaaa accaagcttg gctgagcacg tgatgggaga cttgccaacg      4800
     gatcgcgtcc gaccaaaccc cgcattccac acgactggaa tcgatttttg tgggcctttc      4860
     tatcataagg ctgatgttcg aaacaggcca ccctgcaaat gctacattgc aatatttgtt      4920
     tgtttctcaa caaaggccac gcatttggag gtcgtcaagg atttaactac agcctcattc      4980
     atcgcagcgt taagacgctt catcagccta aggggcaagc cgcggacctt gtggacggat      5040
     aacgcaacca atttcgtggg tgcaagaaat gagctgctgg agctcaagga gcttttcaac      5100
     agcgagccaa ccgtctccgt catcgcttca tcttgcctaa acgatggaat tgactggaaa      5160
     tttatccctc ctcgttctcc tcattttggc ggtctatggg aagcggctgt caagtcggca      5220
     aagcaccact tctatcgagt cgttggcgca acagtgctaa ctcttgaaga gcttcgcact      5280
     ctcgtatatg agatttctgc cattcttaac tctcgaccac tttatccaat ttcagaagac      5340
     cctgacagtc tagatgtgct tactccagct cactttctta aaggctcgag cttcacaacg      5400
     tttccagaac cggacatcac acatctcaac gctagccgtc taaatcgttg gcagcaggtg      5460
     tctcaaatgc aacagaactt ctggcgaaag tggagcatgg agtatctgtc cttattgcaa      5520
     gagaggagca agtggagaga ctctacgcca aacataatga ttggaagcgt cgtcctctta      5580
     aaggatgaaa acttgccacc tctaaaatgg cttcttggcc gtgtcgagga ggccatacca      5640
     ggcaaggatg gaatcatcag agtcgcaatg gttcgaacag cgacgggtct aatgaagaga      5700
     gccgttgcga agctagccgt cctgcccgtc gacagtggat caattgaaag ccatgttctt      5760
     tcaacggggg gagga                                                       5775
//
ID   BEL-7_DAzt-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-302
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 753-753 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
SQ   Sequence 302 BP; 84 A; 63 C; 62 G; 93 T; 0 other;
     tgttcggagc agaacggcgt aaattaaatt aaagtaaatg ccatcgagca ccattgtttg        60
     tttgttttga tttgtgtgtt atctgcctcc ataagctctc tacccgctaa agctcgcgcg       120
     ctgatttatc tgcttgcact ctttcttgag gtcagagctt tcggccgctg cagcggggcc       180
     gctatgatga agacagtcag tgcagctccg atcaccaaca agcaataaag tatcacattt       240
     actaaaaaca aatttactgc tttattaatt taaatattgg atcaaaggtg atatagtcga       300
     ta                                                                      302
//
ID   BEL-7_DBp-I repbase;    DNA;    INV; 5381 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DBp_;
KW   BEL-7_DBp-LTR; BEL-7_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5381
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 636-636 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4444-4998] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(550..1494,1498..5346)
FT                 /product="BEL-7_DBp-I_1p"
FT                 /translation="MDTPEPHGKALAVDTLIDTAGNGENMNVREGNPDMNK
FT                 NQLLLDMLEEKRQSEAKFIEEKYKILMQMNPADVAVAGMFRATDSPTSTQI
FT                 AARQAIPKDLPTFSGDPEDWPLFISTFEHSTTAAGYTNVENMLRLQKSLKG
FT                 KARDLVRDKLLLPNLVPEVISTLKMFFGRPEHILERMVEKVRRLAPPKDRL
FT                 EALIEYALAVRNVCATMEACDLKAHLNNPMLVKELVDKLPNQHKLNWAMQP
FT                 RDDRVAAVKAFSDWLYKIAEAASLVVAPSFYKTGAVNSHNSRRPDKGEADE
FT                 PGPARGQTRSNAIHTEAAQQQVQRCVACGDPSHNPAQCQVFSNLDAEHRWQ
FT                 VIRAGKACFCCLKVHRNRCRTGNCGINGCTRRHHELLHTEYVPNTIGQDRP
FT                 QSHVSTHRDDNHGSQFFRIIPVKLHYGSRQTEIYAFLDEGSSVTLADASVF
FT                 QRLGIQGQAAPMCLQWTAETTRLESGSVKASVQISEMNCDKVYWLNNVQTV
FT                 QNLALPRQTVNMKELCDRFQHLKDLPLRSYSAQPTLLIGTNNWKLAVPRKI
FT                 REGKWNEPIASKCMLGWSIQGSANPQRSIFMHHCDCDWQELHDDIKEHFNL
FT                 DALVPRKLYSAEDELAVKILESTCQKKSGKYEVGLPWRGGIDKLPESRGNA
FT                 LKRLTCMRKKVSQEPDLYEKIDAQIRNLLDKGYAVKLSEEETSRENSRTWY
FT                 LPIFIALNPNKPKKIRLVWDAAAKAHGYALNDYLLRGPDCLNPLIDVLLAF
FT                 RVNKIAICGDIAEMFHRINIREEDMQAQRFLWYDKGSDEVDTYVMRAMTFG
FT                 ISCAPFIAHFVRDKNAETHQEEFPLALNAIQRAHYVDDFIDSMRNEQEAIQ
FT                 ITRQVIEVHRRGGFEIRNWSSNSEEVLKSLQDNGNAGTQKPVDFCATEKIL
FT                 GMFWDPHNDMFKFICRFSRLKRDVLAENAVPTKREVLQVLMSIFDPLGFLS
FT                 CQTIGLKILLQCIWRQKIEWDQELPERILEEWRQWKTILQDIRTFEVPRCF
FT                 SPATSEPCQIGLHTFVDASEQAYSAVCYLRVATDDRVVVSLVMAKSKVAPL
FT                 KPLSIPRMELQAAVMGARLAQKVMSTRNLRIDNATYWSDSKTVLQWLTMDP
FT                 RNFHQFVMHRVAEILETTLVEQWRWIPSKLNVADGATKVTGQTQQETWITG
FT                 PEFLKTDASQSIAFAAELKTLSAGTALLKGSRLAGLNAYLDNDGVLRTRGR
FT                 LNAVDIAEDAIILAHGCRITNLIVRSFHEKYHHLAHETVINDIKNSFYISR
FT                 LRVLHKSVRNTCQRCKIDRAVPRPPQMAPIPRARVGSFERPFTYTGVDYFG
FT                 PLLVNVGRRKEKRWVALFTCLTLRAVHFEIAYSLDTSSCIMCLANFMALRG
FT                 TPREIFSDNGTNFRATEKAVREELKKIEHDKITIKFDGIKWRFNPPGAPHM
FT                 GGAWERLVRTTKGILKNICPSYSFNDEGLRNALMEAQFIINSRPLTFVSLD
FT                 SEDDAALTPNHLLLGSANGYKPLPKEGTNLKRRWNETQRFGDRFWQRWVKE
FT                 YAPVLTRRTKWFEKVPPITIGSIVVVVDELLPRNLWLKGRVTDAMMANDGQ
FT                 VRRVTIKTQHGAIERPATKVAVLDVGLENGN"
XX
SQ   Sequence 5381 BP; 1599 A; 1307 C; 1419 G; 1053 T; 3 other;
     tttctaaaaa acttcctcca aaacttcgtt acctgcggat taaggcagaa aaaacagcgt        60
     cgcgtcgcta gcagacaaca gctagaccga ctggaggcga caaattttgg aagtaacgaa       120
     agtgaaggcg tcgcgtccct agcagccaag gctaggtcga gttgagcacg ccattcttgg       180
     ggaaaaccag aactcttgcg gataaaggca gaggtaaggc gtcgcgtccc tagcagccac       240
     aggctaggtc gagtaagcac gcagccgaga agaagaaaag cagacgccat attgcangca       300
     cgccggacga cgcgaagcat gaacgttgaa gtgtgcagaa tttgcgagaa caaaaacgaa       360
     acagcgtcag aaaattgggt acagtgcgac gtttgcggaa ggtggtacca tttcgagtgt       420
     gccggcgtag aggacgacat tgagagcaag gattggagct gcgattactg tcttgcgggt       480
     tgcagccaca tagcaccgtt cagcggtatg caangatcac cagtacagcc tcaaacacgt       540
     gaagacgcaa tggatacccc tgaaccgcac ggcaaagcgc tagccgtcga tacgctaatc       600
     gatactgccg gcaacggaga gaacatgaat gttcgggaag gcaatccgga catgaacaag       660
     aaccaactct tgttagatat gctcgaggag aaaagacagt ctgaggcaaa gttcatagaa       720
     gaaaagtaca aaattctcat gcagatgaac cccgctgacg tagcggtagc tgggatgttt       780
     cgagccacag attcacctac aagtactcaa atagcggccc ggcaagctat acccaaggac       840
     cttccaacat tcagcgggga tcctgaggac tggccgttat ttatcagcac atttgaacac       900
     agtacgacag cagcgggata tacgaatgtg gaaaacatgc tacgtctgca aaagtcgctt       960
     aaagggaaag ctcgtgactt ggttagagat aaactcctac ttcctaacct agtcccagaa      1020
     gtcatcagca ctttgaagat gttcttcggc agaccagagc acatcctaga aagaatggtg      1080
     gaaaaggtgc gaagactggc accacccaaa gacagattgg aggcgttaat agagtacgcg      1140
     ctggcagtgc gaaacgtctg tgctactatg gaggcgtgcg atctgaaggc gcatctcaac      1200
     aatccaatgc tggtcaagga gctggtagat aagcttccca accaacacaa gctaaactgg      1260
     gcaatgcaac cccgcgacga tagagtggcc gcagtcaagg cattcagtga ttggctgtat      1320
     aaaatcgcag aggcagcgtc attagtggtg gcgccatcgt tttacaaaac gggcgcagtt      1380
     aattcccaca acagtcgccg cccggacaag ggagaggcag atgagcctgg accagcacga      1440
     ggacaaacac gatcgaacgc gatccatact gaagcagctc agcagcaagt tcaacngagg      1500
     tgcgtagctt gcggcgaccc gagtcacaac ccagcacaat gtcaggtatt ctcgaacctt      1560
     gacgcggagc acaggtggca ggtaatcaga gcgggtaaag cctgtttctg ctgcctcaag      1620
     gtacaccgga acagatgccg aaccgggaac tgtggaatta acggctgtac aaggagacac      1680
     catgagttac ttcatacaga atatgttccc aacacaatcg gccaagacag accacagagt      1740
     cacgtgagta cgcatcgaga cgacaaccac ggaagtcagt tctttcgcat cattccagtc      1800
     aagctgcatt acggcagcag gcagaccgag atctacgcct ttctagatga aggatcatcc      1860
     gtgaccttag cagatgcatc cgtattccaa agactgggaa tacaaggcca ggcagcgcca      1920
     atgtgtttgc agtggaccgc agagacgact cgactcgaga gtggatccgt gaaagcatcc      1980
     gtccaaatct cggaaatgaa ctgcgataag gtttactggt tgaacaacgt ccagaccgtt      2040
     cagaacctag cattaccgag acagacagtc aacatgaagg agctatgcga cagattccag      2100
     catttgaaag acttgccgct acggtcctac tctgcccagc cgactttgct aatcggaacc      2160
     aataactgga agctagcagt ccctcgcaag atccgcgaag gaaaatggaa cgagccgata      2220
     gcatcgaagt gcatgctagg atggagcatc caaggatcgg cgaacccaca acgatccatt      2280
     ttcatgcacc actgcgactg cgactggcaa gaactccatg acgacatcaa ggaacatttc      2340
     aaccttgatg cactcgtacc acgaaagctg tactcagctg aagatgagct ggcagtgaag      2400
     atactggaaa gcacctgcca aaagaagtcc ggaaaatatg aagttggact tccgtggcgc      2460
     ggtggtatcg acaaactccc tgagagccgg ggtaacgctc tgaagcggct tacctgcatg      2520
     aggaaaaagg tctctcaaga accagatctg tacgaaaaga ttgacgccca aatcaggaac      2580
     ctcctagaca aaggatacgc ggttaagcta tccgaggaag aaaccagccg ggagaacagc      2640
     cgtacatggt atctgccgat attcatagcg ctgaatccaa acaagccgaa aaagataagg      2700
     ctcgtatggg atgcagccgc aaaggcacac ggatacgcgc taaatgacta cctactcagg      2760
     ggaccagatt gcctgaaccc actcatagac gtcttgctag cctttcgggt caacaaaata      2820
     gcgatttgtg gcgacattgc ggaaatgttt cacaggatca acattcgcga ggaggatatg      2880
     caggcgcagc gatttttgtg gtatgacaaa ggcagcgacg aagtagacac ctatgtcatg      2940
     cgagctatga cttttgggat tagctgcgcg ccgtttatag cgcacttcgt tcgagataag      3000
     aacgcggaaa cccaccaaga agagttccca ttggccttaa acgccatcca aagggcgcac      3060
     tacgttgacg acttcatcga tagcatgagg aacgaacagg aggccatcca gatcaccaga      3120
     caagtcatag aagtacatcg cagaggcgga ttcgagatcc gtaactggtc gtcgaattcg      3180
     gaagaagtac tcaaaagctt gcaggataat ggcaacgctg gaacccaaaa gcccgtggat      3240
     ttttgtgcaa cagaaaagat acttggcatg ttctgggacc cacataatga tatgttcaaa      3300
     tttatctgca gattttcaag gctgaagcgt gatgtgctgg cggaaaacgc agtccctacc      3360
     aagcgagaag tattacaagt tttgatgtcg atcttcgatc cattgggatt tttatcatgc      3420
     cagacgattg gactaaaaat actcctccag tgcatatggc ggcaaaaaat tgaatgggat      3480
     caggagctac ctgagaggat tctagaagaa tggcgccaat ggaaaaccat tttgcaagac      3540
     ataaggactt tcgaggtccc tagatgcttt tccccagcca catcggagcc atgtcaaatt      3600
     ggactccata cattcgtcga cgccagcgag caagcatatt ctgcagtctg ctacttgcgc      3660
     gtggcaacgg atgacagagt cgtcgtatct ttggtgatgg cgaaatctaa ggtggcacct      3720
     ttaaaaccac tttcgattcc gcgtatggag ctgcaggcag cagttatggg agcacgctta      3780
     gcccaaaagg tgatgagcac acgcaaccta cgaattgaca acgccacata ctggtcggac      3840
     tccaagacag tgttgcagtg gctaactatg gacccccgca actttcatca gttcgtgatg      3900
     cacagagtcg ccgaaattct ggaaacaaca ctggtcgagc aatggcggtg gattccttca      3960
     aagctgaacg tagcagatgg agctaccaag gtcaccgggc aaacccaaca agagacgtgg      4020
     ataacgggcc cggagttcct gaagaccgat gcgagccaat ccatcgcctt cgcagcagaa      4080
     ctaaaaacgt tatccgcggg aacggcgctc ctcaagggaa gcagattggc cggattgaac      4140
     gcgtacctgg acaacgatgg agtactacga acaagaggca gattgaacgc agttgacata      4200
     gctgaggacg ccatcatact agctcatgga tgccggataa ccaacctcat agttaggagc      4260
     ttccacgaaa agtatcacca tctcgctcac gagactgtaa taaacgacat caaaaattcg      4320
     ttttatatca gccggctacg agtactgcac aaatctgtgc gaaacacatg ccaacgatgc      4380
     aagatcgaca gagcagttcc cagaccaccc cagatggcac cgatcccgag ggcaagagtt      4440
     ggaagcttcg agaggccgtt cacctataca ggcgttgact attttggccc gttattggtg      4500
     aacgtcggcc ggcgcaaaga gaagagatgg gtagctctgt tcacctgtct tacgttgcgc      4560
     gcggtgcatt ttgagatcgc ctacagtcta gatactagtt catgtatcat gtgcctagcc      4620
     aattttatgg cccttcgagg gacaccgagg gaaatattct cagacaacgg tacaaatttc      4680
     agagccacgg aaaaagccgt gcgcgaggag ctgaaaaaga tcgagcacga taagatcact      4740
     attaagttcg acggcataaa gtggcgattc aacccaccag gagcaccgca catgggtgga      4800
     gcatgggaga gactcgtcag gacaacgaaa ggaatcttga agaacatttg cccaagttac      4860
     tctttcaacg acgaggggtt gagaaacgca ctgatggagg cgcaatttat catcaactcg      4920
     cgacctctca cgttcgtaag tttggattcc gaggatgacg ctgccctgac tccaaaccac      4980
     ctgctgctag gatcagcgaa cggatacaag ccgctgccaa aagagggaac gaatctgaag      5040
     cgtagatgga acgagactca gcgcttcgga gaccgctttt ggcaacgatg ggttaaggag      5100
     tatgcacccg tgttaaccag gcgcaccaaa tggttcgaga aggtacctcc aatcaccatc      5160
     ggaagcatcg tcgtagtcgt ggatgagctt cttcccagga acctgtggct aaaaggacgc      5220
     gtgactgacg caatgatggc caacgatgga caagttcggc gggtgacaat caagacgcag      5280
     catggtgcta tagaaagacc agcaacaaag gtagcagttc tggacgtcgg cttggagaat      5340
     ggtaactgac cacggatcgg gatcaattac gggggaggga a                          5381
//
ID   BEL-7_DBp-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DBp_;
KW   BEL-7_DBp-I; BEL-7_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-298
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 637-637 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 298 BP; 103 A; 55 C; 65 G; 75 T; 0 other;
     tgttaccgcc gtcatagaat taagtttata tttgaaaaat gaaatcgtta aaattagtgt        60
     tgaataatgt ttagaataag ttttgaaaaa cgctagacgt aagcttatcg atatacggaa       120
     aaatggcgga agaacgaggc gtttgcgatc gctaggtgaa gctaacgagg cgagggaaaa       180
     cgacgaagtt ttttagctct cgcctcgcgc gccatgattt gagtttaaat aaaggaaaga       240
     acaaccaaat ccacgtttgc ttaaaaaatc gtgcaccaac ctcgccccga cctcaaca         298
//
ID   BEL-7_DEl-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-305
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 436-436 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 305 BP; 76 A; 57 C; 54 G; 118 T; 0 other;
     tgttggctca tttgagtttt tttttttatt gaatttgtta aacttgaagt tattgaagtc        60
     gtttacatga agtttactgt aagttagttt agggcgaagg cgggagcaca ataaagctct       120
     ctctcgctct cgcgaattcg ccccgtcttc gccaaccttc gttaagctag gctctaagta       180
     cttttatata aattaaatat tcgatcgcac gcagtttttc ttttcgttgt cgtttgccca       240
     aataaagttc acgccaccaa gttccttttc gttggtttta atagaaaaaa tattctaatt       300
     tttca                                                                   305
//
ID   BEL-7_DMel-I repbase;    DNA;    INV; 1741 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 24.06, Created)
DT   21-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1741
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1054-1054 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~84% identical to the consensus. A few old, degenerated copies.
XX
SQ   Sequence 1741 BP; 435 A; 451 C; 454 G; 400 T; 1 other;
     tttggtgacc ccgacgtgat ttgtgcataa acaatatata gtgcaaatcc aaagctatta        60
     agctttaatt aattcgctgt tgttgctgag tgcgttgttg ggcaacaatt tgtgtctgca       120
     atattcagac aaaattaaag gcagtgaaca ttaaaagtaa ctccggattg catatacata       180
     tttgtgcgcg tacatagcca aataacggaa gctgccgcta attcttcttt gcgctcatct       240
     tcccgcttga accgaatttc gagtcgctgt ttctgccgtt tcgttgttgt tgctgttgcc       300
     atggctgctg aaaattctgg aaacgttacc gctgatgcaa acagggtgac atttttgaag       360
     cgcaaggcgg ctgcaattta taagagtgga acgattagcg gatttcttgt caagctctgc       420
     gataatttcg tttgatgagt tcgttcttca tgtgaggttg gagctgatcg atgagcttca       480
     acaaacattt agaaaaattc tcaacgagct cgaagaactt gattttgatg aaatcgaaag       540
     tgacttggst gagaaatttg atgacattct cgtaacgctt aaatcctctg ttcggggaga       600
     gattttaaag cgcgcctcgc aaatgcactc ccactcaact tttgctgacg gcatctccgt       660
     ttgattgtgg ccaccagcag cgttcactca ggaatagggc accgtcgctg ccccctcttg       720
     agcttccaaa attctgctgg aggctatgct aacttggtca acatgggtcc acccaccagc       780
     acgctgccgc aatcccaaat gcttcaggac ggccagggtc aaggaccgga gcaaatatcg       840
     caggacaacg gaataagctc ctcgggacca ggccagcaga ataggatgcc cggcatgcca       900
     gcccaacaac aaggaggagt tcagcaacca ccgccgcaac aggcatccca cggcggcgtt       960
     ccatctccag gattgccaca agtaggaccc ggtggaatgg ttaagccacc ttacgccatg      1020
     ccacagccac cttcacaggg tgtggatcaa caagtgggcc aggggccact cagcggcatg      1080
     atgtcccaaa agccaccgcc gatcccggga caggcaatgc agcaacagcc cttgcagcag      1140
     cagcctcccc cgcgtcaaca cccacatccc catcaggatc cgcagcacca gcatccgcac      1200
     cagatgccgg ccaaccaaac tgcccccggt ggatacgttc tccaggaatg cccggaggtg      1260
     gagcgcagct ggtgaagaag gagctgatct ttcgcatgac agcgtggaat ccaccacgct      1320
     gtattgtacc gaagaaagcg gcttacgaag gcggacgtat gcccggtgga tccatggcgc      1380
     atctttatgg ccctgcgatc tggtcggctg actgagtgca cttgggcact attgttcgat      1440
     gattctacgg tccagttctt tggcatgtca aacctgcccg gcctgttgac tttgctgctg      1500
     gaacacttgg tctcgccgag atgttcgaca aacggaaaaa cgaggagcag tccgctctgc      1560
     tggcggaaga tgcggatgac gacagcatca gcagttacaa ccgcagccgg cattatgaag      1620
     agatggagtc gagttgctgt gctgaggaca ccgacaggat tgacgaagcg ggcagtgaat      1680
     aagctgtgtc tgctgcccct taggaattct gttgaaagcc acgcttccaa cggggggagt      1740
     a                                                                      1741
//
ID   BEL-7_DMel-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 24.06, Created)
DT   21-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-349
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1034-1034 (2019).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~85% identical to the consensus.
XX
SQ   Sequence 349 BP; 90 A; 95 C; 53 G; 110 T; 1 other;
     tgtcgggtca cgcagccgcc agcaattcct aaattttact ttgtwtatat gccaactttg        60
     gagacagtta aactctgcgg cacctcagct gtgcaatatc ttcgttatct aagctcccct       120
     ctctctcgct cgctctagta ctctcgcacc tacacctttg gcttagcgtt ctgctgttcg       180
     ctctgcaatt aagtcgctca ttatcattcg ctttcgtaac ttgtacatat cgcatcgatg       240
     cagaatctcg ttcgctaaac ccaataaaaa catatcgttc gaaatcgcta cataaacctc       300
     gtcttttatt gctcaaaaat agctaataaa aaagcttatt agctcaaca                   349
//
ID   BEL-7_DMoj-I repbase;    DNA;    INV; 6039 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DMoj_;
KW   BEL-7_DMoj-LTR; BEL-7_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6039
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1265-1265 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5072-5668] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..5291
FT                 /product="BEL-7_DMoj-I_2p"
FT                 /translation="MSVLRGAKKQKKENKKTNDKLDELFEMDANNNDIVIN
FT                 KEKDNNMNNDLVKSLLEQIKQLTMQVSTMQNTQAEQKGILEELQASQNAVC
FT                 DGDGLVGAAKGGPMIAIMDAGGLHGSATSKVNVTPTSKLDTHEVVSANGST
FT                 GSGNSHQLDTNDDDRAKCIGKGDARTGGGMVETEAGRDGAAYVTNVDCQRV
FT                 TLGDLCDNQDERRGVYGVSSEAVQQAAPTGGGVKPGIPNQRGVYGVSYGAG
FT                 AAAHGAYGFGTRCGVPYPDESFVEASMYGNVSGHVGLRGCDLVDLAARGRR
FT                 TNDREEQNRTHMSMPRTSPLYKLIDLPEFTGNAEDWPVFVTMFRESSAAYG
FT                 YSNLENLLRLQKSLKGPAKEEVKGLLINPINVERIIERLQFMYGRPELLIK
FT                 SQLELIGEIRPVNENNLERLVPFSSKVENLVVFLQSANAVQHLHNPVLLQQ
FT                 LVEKLPMTKRIQWVDYAASIRPYADLRHFTDWLSGVARSVARAATTINSQR
FT                 PQSRSGPANTQRVYQTTEQPTRHVNSPIKCYQCEGDHTIQKCDEFNKASTK
FT                 ERWSMVKRLRVCFGCLNRGHSLTTCKKKRSCGQDGCIKLHHKSLHYVIMKD
FT                 MPTNSAAEAAINKLDHGVSKLLFKVLPVEVMGPNNLIMKTYAFLDEGSSAS
FT                 LVNEKLACQLGVNQKRSDLTLNWIGSHATNVKSMSCHLRIRAPGGNGKWMR
FT                 FEANTVPDLKLPLQTVDLQELKNKYKQLRNIPLDGYMNADPTMLIGINNCH
FT                 LGSTSRSINLDSNLLAAKTKLGWLVYGSMGSQKQVQSPLLSIVFHTHIKEN
FT                 ADESNLHKLMSDYFSTENFGVKAIGKPLESVTVQRARKILMETTKRLEGAY
FT                 ETGLLWSEDDVHFPDSYNAALKRLKAVEYKLERNGKFTEYNDALMEFVRKG
FT                 YAMKMSNEDAEKVGPRTWYLPHFCVYNVNKPNKIRLVFDAAAMVNGVSLNS
FT                 KLLKGPDENPPLTKILYKFRQGKIGICADIKEMFLQVSVREEDQDSLRFLW
FT                 RSNCSNGKVDTYKMKVMIFGASCSPCCAQYVKNVNAYQAVKYKDEVIDAIH
FT                 SKHYVDDYVASFQSEEQACEISKEVCRVHKMAHFELRGFVSNSTEVQAKLN
FT                 KDTDYMKGRTVKMDAEAIDKILGMHWQSTDDNFVFDLKLNKVDKDIVRGIK
FT                 CPSKRQLLSLVMSIYDPFGMLTDLTIYGKNLMQAVWRLGIDWNDLLPEDLF
FT                 VRFKQWMLQIEKVKNFKIGRCYSPHFLSNEADVELHTFVDASEQAFAAVSY
FT                 WRITVNNHTNVVFVAGKSRCAPLKHLSIPRLELQAAVLGTRLRSSILECHD
FT                 ISVRRSVMWTDSETVLSWIGSDQRQYKPFVAHRIGEILESTDIDSWRRIPT
FT                 NMNVADVATRAQKSLNYVPNGLWTTGPAFLQQDEKFWPAQKMNYVSEDSTE
FT                 RRKHILMVSTVPVIDIQRFSNYMRLKRTVGWIVRFMNQLRKQKITNSIKEL
FT                 TSLELQKAEVILCKMAQQQVFAQEIDDLQKYGSVSKNSDIYSLAPTLSEEG
FT                 VIILHSRLGNATAVSKGVREPIVLPKEHLITKLIVKRYHECFHHQNNELII
FT                 AEIRQKFWITCLRNLVKQAKKNCQYCKNANAKPEAPFMGQLPIDRVTPYMR
FT                 PFSYTGLDYFGPVMVTVGRRREKRWVALFTCLTVRAVHLELAENLSTDACI
FT                 LCIETS"
FT   CDS           4997..6019
FT                 /product="BEL-7_DMoj-I_1p"
FT                 /translation="MFTQFSQTSKEKLSILQKCKCKAGGAVYGATAHRSCD
FT                 AIHETVFIHGSRLLWSSNGNGRTTSREKMGRVVHMFDSTSSSPGVSRKLVY
FT                 RRMHIMHRNFVNRRGIPVRIRSDMGTNFVGADNEIRNVKDIFDFENIQSEL
FT                 ANKGIQWQFNCPANPSSGGCWERLVQSTKRVLAVTLKQQAPHVETLRSLLI
FT                 EAENIINSRPLTHVAVDFDDPQPLTPNHFLLGTSNSTQTPGDTSEYPHRKQ
FT                 YRICQQLKNNFWKRWIREYLPTLTRRTKWNVKRRPIQIGDVVIICEDNQPR
FT                 GSFKKGVVISTIPARDGIIRIAEVKTSTGVLKRPVSKLAILDVIGKTPS"
XX
SQ   Sequence 6039 BP; 1988 A; 1041 C; 1456 G; 1554 T; 0 other;
     gttttatttt tatatgttgc cgttttttgg atgtgaatca caattacatg gaattgtgat        60
     attgggagca atgcagtgat acacacataa gtacatgtgt gtctgtattg gctcaaagtc       120
     ttattttatc tgccgtcgct attggaatat atggatcgca attacatgga attgtgaaat       180
     tcggcgcaat acagtgacac atacatacgt gcatgtatgt ctgtattggt gttttttcga       240
     cgctttgagt acatagctga agcaagatgt cggttttaag aggcgcaaaa aagcagaaga       300
     aagaaaataa gaagacaaac gacaagttag atgaattatt tgaaatggat gcaaataata       360
     atgatattgt tattaataaa gagaaagata acaatatgaa taatgatttg gttaaaagct       420
     tattagagca aattaagcaa ttaactatgc aagtgtcaac gatgcagaat actcaagcgg       480
     aacagaaggg catactggaa gaacttcaag cttcgcagaa tgcagtttgc gacggcgatg       540
     gactagttgg tgcagcaaag ggcggcccaa tgattgctat tatggatgct ggtggcttac       600
     atggaagcgc aacatcaaaa gtaaacgtca cgcctacatc gaaactggat acgcacgagg       660
     tggtatcagc aaatggaagc actggttctg gcaattctca tcaactcgac acaaatgatg       720
     atgatcgtgc caaatgcatt ggcaaaggtg atgcgcgtac tggaggcggc atggttgaaa       780
     cagaagctgg aagagatgga gctgcatatg tgaccaacgt ggattgtcaa agagtcacac       840
     tgggtgactt atgtgacaat caagatgagc ggagaggcgt gtatggcgtc tcgtctgaag       900
     ctgtgcagca agcggcgcca actggtggcg gcgtgaaacc tggtataccg aatcagagag       960
     gcgtgtatgg cgtctcgtat ggagctggtg cagctgctca tggagcttat ggttttggta      1020
     caagatgtgg agtcccctat ccagatgaat cgtttgttga agccagcatg tatggtaacg      1080
     tatcggggca tgtgggactt cggggttgcg atctagtaga cttggctgca cggggtcgca      1140
     gaacaaatga tagagaagaa cagaatagaa cacatatgag tatgccacgt acttcaccgt      1200
     tgtataagtt gattgatttg ccagagttta caggaaatgc tgaagactgg cctgtatttg      1260
     taactatgtt tagagaatca tcagcagcgt atggatactc taacttggaa aacttgctca      1320
     gattgcaaaa gagcttgaag ggaccggcga aggaagaagt aaaaggactt ctgataaacc      1380
     cgatcaatgt ggaacgcatc atagaacgtc tacaatttat gtatggacgc ccggagttac      1440
     tcataaaaag ccaattagag ttgattggtg agattcgtcc ggttaatgag aataatttgg      1500
     aacgtttggt acctttttcg tctaaagttg agaatttggt agtattttta cagtcagcaa      1560
     atgcagtgca gcatttgcac aatcctgtac ttttgcagca acttgtggag aagctgccaa      1620
     tgacgaaacg gattcagtgg gtagattatg cagcatctat tcgcccatat gcagacttaa      1680
     gacacttcac tgattggctc agtggcgtgg cgagaagcgt tgcacgagca gcaacaacta      1740
     taaatagtca aaggccacaa tcaaggagtg gtccagccaa cacacagagg gtatatcaaa      1800
     ctactgagca gccaacgaga catgttaatt cgccgataaa atgttatcag tgcgagggag      1860
     atcacacgat acagaaatgc gacgagttta acaaagcaag cacaaaagaa aggtggtcaa      1920
     tggtgaaacg attgagagtt tgcttcggat gtctgaaccg aggacacagt ttgacgacat      1980
     gcaagaagaa acgtagttgc ggtcaggatg gttgtataaa gctacatcat aagtcactgc      2040
     attatgtaat tatgaaagat atgcctacta atagcgcagc agaggcagcc ataaataagc      2100
     ttgaccatgg agtgtcgaaa ttgttattta aggttttgcc agttgaggtt atgggtccga      2160
     ataacctaat aatgaaaaca tatgcatttc tagacgaggg atcatcggca tcactcgtaa      2220
     atgagaaact tgcttgtcag ctgggagtga atcagaaaag gtctgatctt acgcttaact      2280
     ggattggtag tcatgcgact aatgtaaagt caatgagctg tcacttgaga attcgagccc      2340
     caggagggaa tggaaaatgg atgaggtttg aagcaaatac agtcccggac ttgaagctac      2400
     ctctgcagac agtagatctg caagaattga aaaataaata taaacagcta agaaatatcc      2460
     cattggacgg atatatgaat gcagatccca caatgctgat tgggataaat aattgtcatc      2520
     taggatcaac atcgagaagt atcaatctgg atagcaactt gttagcagca aaaacgaagt      2580
     taggatggct tgtttatgga tcgatgggat cgcagaaaca agtccagtca ccattattgt      2640
     caatcgtatt tcatacacat attaaagaaa atgctgatga gtcaaatttg cataaactta      2700
     tgtctgatta tttttcaaca gaaaattttg gagtaaaagc gattggaaaa cccttggaat      2760
     ctgtaactgt gcagcgtgct cggaaaatat tgatggaaac tacaaagcgg cttgagggag      2820
     cttacgaaac tggtctctta tggtctgaag atgatgtaca ttttccggat agttacaatg      2880
     cagctttaaa gagattaaag gctgtagaat acaaattgga acgtaatgga aagttcacag      2940
     agtataatga tgctctcatg gagtttgtta gaaaaggata tgcaatgaaa atgtcgaacg      3000
     aagatgcaga aaaggttggt ccgaggacgt ggtacctacc acacttctgt gtatacaatg      3060
     ttaataaacc aaataagata cggctggtat ttgacgcggc tgcgatggtc aacggagtgt      3120
     cattgaactc caaattgctg aaaggaccag atgagaaccc gcctttaacg aagatattat      3180
     ataaatttcg acagggaaag attggaatat gcgcggatat aaaagaaatg tttcttcaag      3240
     tatcagtacg agaagaagat caagactcct tgagattttt atggaggagt aactgctcaa      3300
     acggaaaagt cgatacctat aagatgaagg ttatgatatt cggtgcttcg tgctcaccgt      3360
     gctgcgctca atacgtgaaa aatgtaaatg cgtatcaagc tgtaaaatat aaagatgaag      3420
     tgatcgacgc gatacactca aaacactatg tggacgatta tgttgctagt tttcaatctg      3480
     aagagcaagc atgtgaaata agcaaagagg tatgtcgagt acacaaaatg gcgcatttcg      3540
     aacttagagg ctttgtatca aattcaacgg aagtacaagc aaaattaaac aaggatactg      3600
     actacatgaa aggacgaacg gttaaaatgg acgctgaggc cattgataag attttgggta      3660
     tgcattggca gagcacagat gacaacttcg tatttgactt gaagttaaat aaggtggata      3720
     aggacatcgt aagagggatt aagtgcccat ctaaacgaca attgctcagt ttagtgatgt      3780
     caatatatga tccatttgga atgttaacgg atttaacaat atatggaaaa aacttgatgc      3840
     aagcagtgtg gcgacttgga atagactgga atgatttatt gcccgaggat ttattcgttc      3900
     gatttaagca atggatgctc caaatcgaaa aggtcaagaa tttcaagata ggaagatgct      3960
     actcacccca ttttctatca aatgaagctg atgtggagtt gcatacattt gtagatgcaa      4020
     gcgaacaggc atttgctgca gtttcttatt ggaggataac agtaaacaat catactaatg      4080
     ttgtattcgt tgcagggaaa tcgagatgtg ctcctttaaa acacttgtcg ataccccggc      4140
     tcgaattgca ggctgcagta cttggaacga gactcagaag ctcaattttg gaatgccacg      4200
     acattagcgt gcggcggtca gtaatgtgga cagattctga aacggtttta tcatggattg      4260
     gctctgatca acgacagtat aagccgtttg tggctcatcg tataggtgaa atcttggaat      4320
     caactgatat agacagctgg cggcggattc ctaccaacat gaatgttgct gatgtagcta      4380
     cgagggcaca gaagagtttg aactatgtgc caaatgggtt gtggacaaca ggtccagcat      4440
     ttctgcaaca agatgaaaaa ttttggccag cacagaaaat gaattatgta agcgaggact      4500
     caacggaacg tcgtaagcac atattgatgg tatcaacagt tcctgtgatt gacatacaac      4560
     gattctcaaa ttatatgcga ttgaaacgta ctgtcggttg gatagtaaga ttcatgaatc      4620
     agctacgtaa acagaaaata acaaattcaa taaaagaact gacatcactg gaattacaga      4680
     aggcagaagt catattgtgc aaaatggcac aacaacaggt ttttgcacag gaaatagatg      4740
     acctgcagaa atatggatct gtatcaaaga atagcgatat ctactcattg gctcccacac      4800
     ttagcgaaga aggagtgata attttacaca gcagacttgg caacgctaca gcggtgtcga      4860
     aaggtgtacg agaaccaata gttttgccca aagagcatct gataactaaa ttaattgtaa      4920
     agcgatatca tgagtgtttt catcatcaaa ataatgaatt gattattgca gaaattagac      4980
     agaaattctg gatcacatgt ttacgcaatt tagtcaaaca agcaaagaaa aattgtcaat      5040
     attgcaaaaa tgcaaatgca aagccggagg cgccgtttat ggggcaactg cccatagatc      5100
     gtgtgacgcc atacatgaga ccgttttcat acacgggtct cgactacttt ggtccagtaa      5160
     tggtaacggt aggacgacgt cgagagaaaa gatgggtcgc gttgttcaca tgtttgacag      5220
     tacgagcagt tcacctggag ttagcagaaa acttgtctac cgacgcatgc atattatgca      5280
     tcgaaacttc gtaaataggc gaggcatccc cgtacggatt aggtcggata tgggaacgaa      5340
     cttcgtggga gccgacaatg aaatacgaaa tgttaaggac atatttgatt tcgagaatat      5400
     tcagtcagaa ttggccaaca aaggtattca atggcaattc aattgtccag caaacccaag      5460
     ctctggtggg tgctgggaac gtttagttca atcaacgaaa cgcgtattgg cggttacttt      5520
     aaagcaacaa gcaccacatg ttgaaacttt gagaagctta ctcattgaag cagaaaatat      5580
     cattaacagt agaccactaa cacatgtcgc agttgacttc gatgatccgc agccattgac      5640
     gccgaatcat tttctactgg gaacatcaaa ctcaactcaa acacctggag atactagcga      5700
     gtatccacat cggaaacaat atcggatttg tcaacaattg aaaaacaact tttggaaacg      5760
     ttggattcga gaatatttgc caacactaac aagacgcaca aagtggaacg tgaagagaag      5820
     gcctatacaa ataggagatg ttgtcatcat atgtgaggac aatcagccga gaggcagttt      5880
     taaaaaaggc gttgtaatca gcaccattcc agctagggat ggaatcatac gtatagcgga      5940
     ggtgaaaaca tcaacgggtg ttttgaagcg tcccgtatct aaattagcta ttctagatgt      6000
     tattggtaaa actccctcgt agttttacgg tgggcggaa                             6039
//
ID   BEL-7_DMoj-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DMoj_;
KW   BEL-7_DMoj-I; BEL-7_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-361
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1266-1266 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 361 BP; 134 A; 55 C; 62 G; 110 T; 0 other;
     tgttgtgaat taaatcatat caaacgttaa tttcgaatta gatatctatt gcacccctgt        60
     aagttatcga taggtcgcag ccctggtctc aagcttcgat atgtcgatca gttagtcgta       120
     agaaagagct gaagaacggc agcacaacac ataaaaataa atgtttacaa gttttacgtt       180
     tatttgtttc atgatcattt aagtatgttt aaataagact aatgcgtgaa atattgaata       240
     taactccatg gtccatacaa atggaataaa ccaatggaaa aactagtaag aagacgacta       300
     aaacttattc tattttcgtg atgtaataaa atgaaattac ttgctagcaa gagtagcaac       360
     a                                                                       361
//
ID   BEL-7_DPe-I repbase;    DNA;    INV; 6378 BP.
XX
AC   AAIZ01010482;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DPe_;
KW   BEL-7_DPe-LTR; BEL-7_DPe-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6378
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAIZ01010482; Positions   42134   35757.
XX
CC   Positions [4877-5458] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           375..3137
FT                 /product="BEL-7_DPe-I_3p"
FT                 /translation="MASSSINVMLDRQLATGEEIQSLVRNYKKDSAERKQK
FT                 PEYFKSRIENISKLWDAFSMEECKIKKITQNSKIEHSYFSNEYFKHTKELV
FT                 VRYKDEFKKQLAALEMDIDTGSITSMESEPEIEPMIREQKVLLESLERIMN
FT                 RMTNETRKDFKPIIIKYWDEIRAIHIQIYKKCIDPVKMGYNINNYIAAEDA
FT                 VLTVQTMTEADAVQQIIAAPHMHNTLPLPKVAIPKFDGDYLKWQQFHDIFK
FT                 QMIHEASVPVIQKMWYLKTNVTGEAENLIRHLSLTENNYTTAWNMLQERFS
FT                 NKRVLSNALIQRLLDQPSTSNDAKSIKALHDNVKETLSALNNINIETAGWD
FT                 PILLCVLTKKLDRQTHTLYEQSIQSTKKLQPLSELMKVLEQRFLTLEAIGW
FT                 EKTKKPITCASAGTESQYVCYFCEKPNHAIYKCTQFLKKTVAERLNWVQRN
FT                 QLCVKCFKRDHTAKNCQRRDCVKCNKGHNTLLHLEIKSEAKTAASANSSQN
FT                 TYVLLATALVTIKGNNGQMGEFRALLDSGSQVNVISERALKILDLKVTKSE
FT                 LQINGIGGRTQTSKARVNVMLTSQDNKFNTRLEAIVLTHIVADQPAQSIDT
FT                 SRWKLPKNITLADPNFDKTGRIDILLGAEHYFEIMQDKHVSIGKGLPRLQE
FT                 TKLGWIVAGKLRQESKSQSTCAVLTEEDKVDQQISKFWELDSFPSNTPCLS
FT                 PLEKRCEQYFVQNIQMACDKKFIVRLPFLEDASSLGESRDLATRRLFCLEK
FT                 RLSRDPETKASYVQFMKEYEALGHMKEMHTNEIARSRYFIPHHCVMKPDSS
FT                 TTKLRVVFDASAVTSSGKSLNDLMHKGPTVQSSIFSILLRFRMHKYVFTAD
FT                 IEKMYRQIWVNPEDQYYQTIVWRNDPSEDLRYYRLKTVTYGTKAAPYLATK
FT                 CLQYLAQKGQERIPGWS"
FT   CDS           4781..5914
FT                 /product="BEL-7_DPe-I_2p"
FT                 /translation="MARSIVQNCVKCTRAKPKLLEQIMGNLPPLRVTQARP
FT                 FLNSGVDYCGPFKIHYKIRGKKPNTAYIAIFCCFATKAVHLELVSDLTTEA
FT                 FLAALRRFISRRGKCQVLHCDNATNFVGARNKLQELEEAIFSEKAKEHIVQ
FT                 ECNNKGVQFKFIPPRAPHFGGLWEAAVKSAKHLLLKNVTTANLTYEELETV
FT                 IVEIEAILNSRPLTPISDNPNDVTAPTPGHFLIGEPLTAQADSEPSQQPKT
FT                 LGNRWQAVSKLKHSFWTQWSNEYLQQLQQRQKWRKSSANIKEGTLVILKED
FT                 NTPVLQWPLGRIIRLFHGKDNFVRVVEVKTAKGIFKREIQHVAPLFNEEEP
FT                 THKHPIDDPSENEESSEDRQPRKRTQPNTINIDDG"
XX
SQ   Sequence 6378 BP; 2270 A; 1288 C; 1282 G; 1538 T; 0 other;
     tttggtgacc cccgactttt ggacacttaa ccgttcatct ggattttgtt cccgatttag        60
     aacttggatt tagttggaaa atcctacata attggtcaac ttggcgacca atttacacac       120
     atacaacaac taacaatcag agttgagatt tcaaaccttc ggtgaaggaa aacgtaattg       180
     gagttatttg gatctaactc aaccatcaca gtcaacttgg cgactaaggt tgaattggaa       240
     acaaggattc cagtgtcata aatatttatt gagatacttt gaccatcttc gtggttgtga       300
     gtagaggcac aaccagtcat agtgacaaac aaattacctc catcgggtca aagtattaaa       360
     ataaataaaa taaaatggca tcatcaagca ttaatgttat gctagacagg cagcttgcca       420
     caggcgaaga gattcagagc ctggtacgaa attataaaaa ggattctgct gaaaggaagc       480
     agaaaccaga atattttaaa tcccgcattg agaacatatc aaagctctgg gacgcatttt       540
     caatggagga atgtaaaatc aaaaaaataa cacaaaactc aaaaattgag cacagttatt       600
     tctctaacga atatttcaaa cacacaaaag agttggtcgt cagatataaa gacgaattta       660
     aaaagcagtt agctgcacta gaaatggata tagatacagg atccattaca tctatggaga       720
     gtgagcctga aatagagccc atgatccgag aacaaaaggt gctgcttgaa agtctagagc       780
     gcatcatgaa cagaatgacg aatgagacgc gaaaggactt caaaccaata ataatcaaat       840
     attgggatga gattagagcg atccatattc aaatttataa aaaatgcatt gatcctgtga       900
     aaatgggata taacattaac aattacattg cagctgaaga tgcagtatta acagtccaaa       960
     caatgactga agcagacgct gttcaacaaa ttatcgctgc tccacatatg cataatacat      1020
     tacccctgcc taaggttgct atccctaaat ttgatggtga ctacttaaaa tggcaacagt      1080
     ttcatgacat ttttaagcaa atgattcatg aagcatcggt acccgtcatt cagaagatgt      1140
     ggtatttaaa aaccaatgtt acgggagaag cggaaaattt aatacgccac ctttcgctaa      1200
     cagaaaataa ttacacaacg gcatggaaca tgcttcaaga gcgtttcagc aacaaaagag      1260
     tgcttagtaa cgcactaatt caaagattat tggatcaacc aagcacttcc aatgatgcaa      1320
     agtccataaa ggctttgcac gataatgtaa aggaaacatt atcagcactc aataacataa      1380
     atatagagac agctggatgg gatccgattc ttctatgtgt tttgacaaaa aaattagatc      1440
     gtcagactca cactttgtat gaacaatcca tacaaagtac aaagaaatta cagcctttga      1500
     gcgaattaat gaaagttctc gaacaaaggt tccttacctt ggaagccatt ggatgggaaa      1560
     aaacaaagaa acccatcaca tgtgcctcag caggaactga aagtcagtat gtctgctatt      1620
     tttgtgaaaa gccaaatcac gctatttaca aatgcacgca gtttttaaaa aaaactgtcg      1680
     cagagaggtt aaattgggtt caaaggaacc aactttgcgt caaatgtttc aaacgcgatc      1740
     acactgcaaa gaattgccaa agaagagatt gtgttaagtg caataaagga cacaacactc      1800
     tactacattt ggaaatcaag tctgaagcca aaactgcagc atcagcaaat agtagtcaaa      1860
     acacttatgt attactagct actgctcttg ttacaataaa aggcaacaat ggacaaatgg      1920
     gtgaatttag agccctactt gattcaggct ctcaagtcaa tgtgatttct gaaagagcat      1980
     tgaaaatatt agatctgaaa gtcacaaaat cagaactaca aataaatgga attggcggac      2040
     gaacacaaac gtcaaaagca agagtcaatg ttatgcttac ttcacaagat aacaagttta      2100
     atacaagact agaagcaata gtattgacac acatagtggc agatcaacca gcacagtcaa      2160
     ttgatacgtc tcgttggaag cttccgaaaa atatcacttt ggcagatccc aactttgaca      2220
     agactggaag aatagacata ctattgggag cagaacatta cttcgaaatc atgcaagaca      2280
     agcatgtatc aattggaaaa ggattgccca ggctacagga aacgaaacta ggctggatag      2340
     tggctggcaa gctaagacag gagtcaaaga gccaaagcac gtgtgcagtt ttgactgagg      2400
     aggacaaggt ggatcagcaa atctccaagt tttgggaatt ggattcattc ccgagcaaca      2460
     caccatgctt atcccctcta gagaagcgat gtgagcaata ttttgttcaa aatattcaaa      2520
     tggcatgtga caagaaattc attgtcagac tcccattttt ggaagatgct tcttccctag      2580
     gggagagccg tgatttggct acacgtcgac ttttttgcct ggaaaaacga ctgtcacgag      2640
     atccggaaac caaggcaagc tatgtgcaat tcatgaaaga atatgaggca cttgggcata      2700
     tgaaggaaat gcacactaat gaaatagcac gatcacgtta ttttattcca catcactgtg      2760
     tgatgaaacc tgacagctct acaacaaaat tgagagttgt ctttgatgct tctgctgtta      2820
     cgtcgtccgg caaatcactc aacgatttga tgcataaagg tccgactgtg caaagttcga      2880
     tattttcaat attgcttcgt ttccggatgc acaaatatgt atttacggca gacatcgaaa      2940
     aaatgtatcg tcagatctgg gtcaatcctg aggaccagta ctatcaaaca attgtatggc      3000
     gaaatgatcc atcagaagat ctgagatatt acagactcaa aactgtaaca tacggaacta      3060
     aggcagctcc atatttagcc acaaaatgcc tacaatatct tgctcaaaag gggcaagaga      3120
     gaatacccgg ctggagctga tgcactagaa aaggatttct atgtggatga ttgcttaaca      3180
     ggagcagatt ccataccaga ggccctccag aaacagaagg aacttaacca actcctacaa      3240
     aattctggat ttaagctgag aaaatggtgc acaaacaacg tgcacatact acagaacatt      3300
     ccgaaggaag acatgattcc aaatgtacaa ctggaggata ccacttatga agactgcagc      3360
     gtgaagaccc tgggaataac gtggatgcct aaatccgacc atttctcagg gtcttcacgc      3420
     ttatgaagac tgcagcgtga agaccctggg aataacgtgg atgcctaaat ccgaccattt      3480
     ctgtggaaaa acggagattg ccactaagga agcaatatcc agaagagatg tcgtatccga      3540
     aatttttagg atcttccgat ccgcttggat tgttttcacc tgttgtgatg aaagcaaaaa      3600
     tctttatgca gcatctcaca aaggaaggtt ttgactacaa aggaagcgct tccagttcat      3660
     ctccaggagg aatggaaaag gtacagggag gagttaaaat tattaaactc catacaagta      3720
     ccacgtcata tattccaagg acaaattccg atatcatcgg agatacatac ctttgttgac      3780
     gcatcggaga aagcatttgg agctgcagta tatatccgag caatacataa ggataagcgg      3840
     gcaacgattc aattgctatg tgccaaatca catttagcgc ccatcaatgc attaacatta      3900
     ccccgtttgg aactaaaagc ggcggtgtta ggtgctcaat tgacagcaaa agtaaaggaa      3960
     gagttatcaa tggaagatgc atcaaccttc ttttggtctg actcaaggat cgtattatca      4020
     tggattaact gctcgtcatc catccgagac aaattcgtag ctacaagaat agctacgatt      4080
     caagaattga cgatacaaag acagtggagg catgtctcat ccgaaaataa tgcagcagat      4140
     gtactctcca gaggaatgac ggcgacgaag ttcataaaac atagcatgtg gttttatgga      4200
     ccattatttt tacacggccc aacatctaca tggccaccac catttgtggc tacaaaagag      4260
     gagttgatca gtgcaaatcc ccaaaagatt ggtcagtcat caattatgac tatcactcgg      4320
     gaggatgacc taatctacaa aataaagcac aacaactcat acaacaagct attgagaata      4380
     gtagcttaca tgatgcgttt tcgaggaaag aaaacgcaca caagcaagac tgtccaagtc      4440
     aatgagatga aagaagctca gaaaattgtc attcgttaca tacaacagaa tgacttcaaa      4500
     gaagacatac gtcacctaac aaaacataag gaaacacaaa agggaagttc gattaactct      4560
     ctaacaccat tcatggatca ggagggaatc ttacgagtag gtggtcgact ggaagcggca      4620
     aacacttcat ttgacgccaa acacccaatg ctcctgccct acaacgatcc aattgtgaag      4680
     ttgatccttg gtaagataca caaggaaaac atgcattgcg gcccacaggc attgctgaca      4740
     gcatcacgac aacagtactg gatactcaaa aggaaaaaac atggccagaa gtattgtgca      4800
     gaactgcgtg aaatgcacta gagccaagcc taaactacta gaacaaatca tgggaaatct      4860
     gccacctctt cgagtcaccc aagcacggcc attcctcaat tctggtgttg actactgtgg      4920
     accattcaaa atccactata aaattcgagg aaagaagcct aatacagcgt acatagctat      4980
     attttgttgt ttcgcgacta aagcagtaca tctggagctt gtcagtgatc tcaccacaga      5040
     agcattttta gcggcacttc ggcggttcat ctctcgtcga ggaaaatgtc aagtgctcca      5100
     ttgcgacaat gctacgaatt tcgtaggagc caggaacaaa cttcaagaat tagaagaagc      5160
     catattctcg gaaaaggcaa aagaacatat tgtacaagag tgcaacaaca aaggggtaca      5220
     gtttaaattt atacctcctc gcgcaccaca cttcggcggc ttatgggaag ctgcagtaaa      5280
     atctgccaaa catctcctct taaaaaatgt gacgacggca aatctaactt atgaggagtt      5340
     agaaacggtt atagtcgaaa tagaggccat actaaactct cgaccattaa caccgatatc      5400
     tgacaaccca aacgacgtaa cagcacctac gccagggcat ttcctgatag gagagccgtt      5460
     aaccgcacaa gctgacagtg agccatccca gcagccaaag acgctaggaa atcgatggca      5520
     agcagtgtca aagttgaagc actcattctg gacacaatgg tccaatgaat atcttcagca      5580
     gttgcaacag cgtcaaaagt ggaggaagtc ttcggctaac attaaggaag gaacattagt      5640
     aatactaaag gaagacaata caccagtatt acaatggcca ctaggaagaa tcattcgatt      5700
     gtttcatggc aaggacaatt ttgtacgagt ggtggaagta aaaacggcaa aggggatttt      5760
     caaacgagag atccaacatg tagctccact attcaacgaa gaggaaccca cacataaaca      5820
     tccgatagat gatccatcag aaaacgaaga atcatccgag gacagacagc ctaggaaaag      5880
     gacacagccg aacacaatca atattgatga tggttgaaca tactatggtc aacggccggg      5940
     aggatgtacg atttcaacta aagtacaaaa tcgtacgatt agacctagac aaataactaa      6000
     ccataaatag gttaagattt cccagccacc taaagaaata aacgataata tgctctaaat      6060
     ataaatatgt gacatgcact actgacctaa ataaatatac aacggacagc tgcatgcatt      6120
     tgtgtacata cactgttaag atatttacgg cactatcata aaacacattc tggatgacct      6180
     gcatgtggtc aaatctcaca ccatctgcat gataaccatt gtgaccgtca taaatatgac      6240
     ccttggaata ttccactgtt ggatttgtag taatttgatt agtcctaaat agagataaca      6300
     catttcccta gcaatatgat actcagagct aattaaacat acctaagatc ctaagtaaac      6360
     aatcatactc atagaaat                                                    6378
//
ID   BEL-7_DPe-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   AAIZ01010482;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DPe_;
KW   BEL-7_DPe-I; BEL-7_DPe-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-227
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAIZ01010482; Positions   35756   35530.
XX
SQ   Sequence 227 BP; 78 A; 50 C; 33 G; 66 T; 0 other;
     tgtatataaa ccttgcattt taccaaataa aatcagtacg aaagaaaact ctgacgtatt        60
     cacatctccg aagcccaatt tgttcaagta ccgattgcgg cgaccatttg ttactggtac       120
     atgaaccggt agcatacata cataacattt tcagcatacg attgtcatat tgacaatcac       180
     cacagaatca agtgaatcta catcaacaga ttcatttgat tcgttca                     227
//
ID   BEL-7_DPer-I repbase;    DNA;    INV; 5639 BP.
XX
AC   .
XX
DT   16-JAN-2012 (Rel. 17.08, Created)
DT   16-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DPer_;
KW   BEL-7_DPer-LTR; BEL-7_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5639
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1479-1479 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4770-5189] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1852..3813
FT                 /product="BEL-7_DPer-I_1p"
FT                 /translation="MILFKILPVNLHAKNKIVRCHAFLDEGSAVTLINESL
FT                 ADELGLHGPKESLTLQWFGEKTSTELVSRFNIGISDERGGKVYALNGVRTI
FT                 KDLRLPKQSVNVSELSSQYPHIKSIPVKGYRNARPEILIGLDNLHLIAPKQ
FT                 MRSMGYVGPAIALTNLGWVAYGKCRGESGPMSNVKAVHLVKHNDEHIEQLV
FT                 RDYITNSEMDVRIVKNHVEGRETERSNRLLSTTTKRIGDRFETGLLWKVDD
FT                 VVLPDSKKMAIKRQLSLERKFIHDPEYYKKYCDLMEAYEEKSYIRHITSNE
FT                 LEVDKPGKLRIVFDAAAEVDGVSLNSMLMTGPDGYQSLTDILMRFRQKPIG
FT                 VCADIAEMFHQVIIRKEDRCAQRILWRKNPGDEMKEYEMQVMTFGAKCSPA
FT                 SAQYVKNRNALEFRESYPDAVNGIIKNHYVDDLVHCFSSEESAVRVVKEIV
FT                 DIHKKGGFELRKFVSNSKFFNKVFGNEQVAEPITLDRDESSHYQKVLGMYW
FT                 CTRSDEFGFSLSFNKIDASIFSESRIPSKREVSRVVMSVFDTFGILAEYSL
FT                 IAKLLLQSIWQKRTEWDQPIEGDDIKQWKCWLRSLSQACKIRIPRCYAEEF
FT                 FGEPIELHIFCDASESAYAAVGYWRIRTKSGWKSAFIMGKTKCAPMKLSTI
FT                 PRLEL"
FT   CDS           4119..5189
FT                 /product="BEL-7_DPer-I_2p"
FT                 /translation="MESRIFRRATLELRSKFTLSINEMSSDGSVNIVFREL
FT                 LERFSSFTRLMRVVAWVNRMCDRKTKRKVYLDVSEIEEAVLIVIRNVQDVA
FT                 FHDERVALLTGKSIEKNSKLWKLSPIIDGRGVIRMNGRINNACSVGEETRR
FT                 PILMPQGHHVTGLIVRHYHELWKHQNENTIIAEIRRKYYIPHCRQEVRRAA
FT                 RNCMTCKIQRASPKTPLMGQLPKDRLSPYVRPFSYVGIDYMGPFLVVRGRS
FT                 TEKRWICIFTCLTIRAIHLEIARDLTTDTCLRVLHKFVARRGRPVRIRSDN
FT                 GTNLVGAERELKRELQDLDHIRIANELSTKQIEWLFNCPLSPHAGGCWERL
FT                 VRSVKRAIGHALHV"
XX
SQ   Sequence 5639 BP; 1776 A; 1132 C; 1413 G; 1305 T; 13 other;
     gtcgaaaaaa gagcggggat aaaagacggg atatacctac atataagaat aaaatgtatt        60
     aacctccttt tgcaaccaac gccnaagtac ctatgaagat aagcgattgt gttttatccg       120
     caattctcac gttcctggac tcaacanctt ttatttcgct tcttggaagc caatgacgct       180
     agagctcttg gagtttgtat gaagacgggc agagactcgt ggtgcaagca ctgaagtata       240
     ctggacattg gagaagcgac ggaacccaca aggagacggt catctcgctc gtgggtggat       300
     aataaacatt gcagaagacg gagngcaacg tgggtgcgca cgtcnggcag ctgaaaaaag       360
     cgcacattta tatgtatgta tgcgngatcg tgcacatact gccatctcgc tctaaccaac       420
     gaagttcttg cgggccagca actagaggct tgagtgcgca gttggctgat gaaatcgagt       480
     gaaaatttct ggattgtggt ttgtttggta agtgccaatt tnattgttga tttggggaaa       540
     ggttagtctg cgggtgatga tcaccagagc aatgagcaaa tnaagggcaa cggatgaaat       600
     ggacgaggac aacgttgaga tgggaaaagt ggaaagagaa nccgcgcgag gtgaagcctc       660
     anatatggag ggggccgggc ccggcacatc aaaagaagcc caatcacatg gcgttgttaa       720
     cgttatgatg gagatgtggc gccaaatgca agaaggtcag cgggccaatg caatgcaaat       780
     gcagcagttc caaatggaag ttctgcggat gaaacaaatt caaatggaaa aaactaatat       840
     acttctgcga tcccttggta ttagtggaag gacaactggc gagccaggac cacaatcaac       900
     cacggctgag ccctcagtga tatcagacgc agtctcatca ccaaggcaac cggttccttc       960
     tcaggaaacg caaagaaaat tgtacgatct accggagttt gatggtgctc ccgaagagtg      1020
     gccaatgttc aacgaagctt tcactatgac cactgcacag tgacaggcaa aatttgttac      1080
     gcctccaaaa ggcaataaag ggcaaggcta gggagaccgt tgaatgtttg cttattcaca      1140
     gttctaacgt ttcaaatatt ttagagaccc ttaaaaaaaa tgttggtaga ccggagaaac      1200
     tcgtaaaaag ccagattagt cgcgttagag aatttccgag cagtgagggt agattggagc      1260
     agttagtaga gttcaaaatt aaggtacaaa actaggcttc attcttagaa gcagctaacg      1320
     cacgtcagca gttaaaaaac ccaacattaa tggaggagtt aatcttaaag tggccagtgc      1380
     aacagagact ggagtgggcc cgccattcca agcaactagg agatgaaaaa tcgatccgtc      1440
     atttaaagtc tatggcttca gggattggcc gaagaagtgc aagacgcagg attggttgac      1500
     gatcaggcga cgttcaagcc aaagaaggaa aagtcgagac tattccatgc aaacgacatc      1560
     ggacttgtaa ccacgaaggc gtgctccgcc tgcaatggga aacacgactt ggaaaactgt      1620
     aactcatttg cccagttaga acttgaaaaa aaatggcagc atgaaaggga aagaaaatta      1680
     tgcttcaatt gcctaaagta cggccatcgt agtcaaaaat gtagacgaaa tcaccaatgt      1740
     ggacttgatg gatgtgccaa acgcattcac cgtttgctcc atgcagaatc agttaatcaa      1800
     ccaggcgagg aagtaaagtt cacaggaaca gcaacgcatg aggctagctc aatgattttg      1860
     tttaagatat tgcctgttaa tcttcatgct aaaaataaaa tagtgaggtg ccacgccttt      1920
     ttggatgaag gttctgcagt aacccttata aatgaaagcc tggcagacga gttaggatta      1980
     catggaccca aagaaagtct gacattgcaa tggtttggag aaaagacatc aacggaattg      2040
     gtcagccgat ttaatattgg aatatctgat gaacgtggag gcaaggtcta tgcactaaac      2100
     ggagtaagga ctattaagga tttacggctg ccgaagcaat ccgtaaacgt gtctgagcta      2160
     agttcgcaat acccacacat aaagagtatt cctgtgaaag gctatagaaa tgctagacct      2220
     gaaatactaa tcggactaga taacctacat ttgatagctc caaagcaaat gagatctatg      2280
     ggatacgttg ggccagccat tgcattaacc aatctgggat gggttgcgta tggaaaatgt      2340
     cgcggagaat caggacccat gagtaatgta aaggccgtac atctggttaa acacaatgac      2400
     gagcacattg aacagttggt gcgagactac atcacgaatt cggaaatgga tgtgcggatt      2460
     gtgaagaacc acgtagaagg tcgagaaact gagagatcga accgattgct atcaaccacg      2520
     acaaaacgta ttggtgaccg ttttgaaacg ggattactat ggaaagtgga tgacgtcgtc      2580
     ttgcctgaca gcaagaaaat ggcaataaag agacaattgt ctttggaaag aaaatttata      2640
     catgatccag agtactacaa aaaatactgc gacctgatgg aagcatacga agaaaagtca      2700
     tacattcggc atatcacaag caatgaactg gaagtggaca agcccggcaa gttgagaatt      2760
     gttttcgacg cggcngcaga agtcgatgga gtgtcgttaa actccatgct catgactggc      2820
     cccgacgggt atcaatcctt aacggacatt cttatgaggt tcagacagaa accgattgga      2880
     gtctgtgctg acatagcaga aatgttccac caagtcataa tacgaaagga ggatcgatgt      2940
     gcccaacgca tactatggag gaagaatcca ggcgacgaga tgaaggagta tgaaatgcag      3000
     gtcatgacct ttggagccaa atgttcaccg gcctctgctc aatacgtgaa aaatagaaac      3060
     gcacttgaat ttagggaatc gtatccagat gcggtgaatg gcattattaa aaaccattat      3120
     gtggacgatt tggtgcattg tttttcatcc gaagaatcgg ctgtgagagt cgtgaaggag      3180
     atagttgaca ttcataaaaa gggaggattc gaactgagaa agtttgtgtc caattcgaaa      3240
     ttcttcaaca aggtttttgg taacgaacaa gtagctgaac ccataactct tgatagggat      3300
     gaatcttcgc attatcaaaa ggtcctggga atgtactggt gtacacgcag cgacgaattt      3360
     gggttctcac tttcgtttaa caaaattgac gcatcaatct tttcagaatc aagaataccg      3420
     tctaagcgag aagtatcgcg agtggttatg tctgtgtttg acacatttgg aattctagcc      3480
     gaatattccc tgatcgctaa actgcttctg cagtcaatat ggcaaaagcg aacagagtgg      3540
     gaccagccaa ttgagggcga cgatataaag caatggaaat gttggttgcg cagcctaagc      3600
     caagcatgca agataaggat accccgatgt tacgctgaag agttctttgg ggaaccaatt      3660
     gaactacaca tattttgcga tgcgagtgag tcagcttatg cagcagttgg atactggcgc      3720
     atacgtacga aatctggatg gaagtccgca tttataatgg gaaagaccaa gtgtgcccca      3780
     atgaaactat cgaccatacc caggctcgag ctacangcgg cagtgctagg aactcgtctc      3840
     aggaaatgta ttcttgaggg tcacgacgtc aaccccaaat gtgtccacat gtggtccgac      3900
     tccaagactg tcttagcatg gattaaatca gatcacagaa aatataagcc atatgtagga      3960
     cacagaattg aagagatact tgaagccaca aggttggaag attggcattg ggtgcctact      4020
     aaggataacc cggcagactt tggcaccaaa ctcagatctg gaactcgaga aacctcctgg      4080
     ttgagaggcc ctcaattcct tcaagaggac gcaagtcaat ggaatctagg atcttcagac      4140
     gggcgacact ggaactaaga agcaagttta cgttatcaat caatgagatg tcttcagacg      4200
     gatctgtcaa tatcgtattc agggagttgc tggaaaggtt ctcttcattt acaaggctga      4260
     tgcgagttgt cgcttgggtc aacaggatgt gtgatcgtaa gaccaaacga aaagtctacc      4320
     ttgatgtatc tgaaattgaa gaagctgtac tcatagtgat ccgcaatgta caggatgttg      4380
     catttcatga tgagcgggtg gcgctattga ctggaaaatc catcgaaaag aacagcaagc      4440
     tgtggaagtt gtctccgatc atagacggaa gaggagtgat ccgcatgaat gggcgtatta      4500
     ataacgcatg ttcggttgga gaagaaacca ggcgtccaat attaatgccc caagggcatc      4560
     acgttacagg attgatcgtg cgacattatc acgagctatg gaaacaccag aatgaaaaca      4620
     caattatagc agaaatacgc aggaagtact acataccaca ctgccgacag gaggttcgcc      4680
     gtgcagctag aaattgtatg acttgtaaaa tccagagagc ttcaccaaaa acgccattaa      4740
     tgggacaact tcctaaggac agactctctc cgtacgtacg cccattctca tatgttggaa      4800
     tcgactatat gggaccgttt ctggttgtaa gaggaaggag taccgagaaa cgctggatat      4860
     gcatatttac atgccttaca ataagagcaa ttcatttgga aattgccagg gacctgacaa      4920
     cagatacgtg tcttcgagta ttgcataaat tcgtggcgcg gcgcggaaga ccagtaagaa      4980
     tccgatctga caatggtacc aatttggtgg gagctgagcg tgaattgaaa agagaattac      5040
     aggacctcga tcacattaga atagcgaacg agttgtcaac caagcagatc gaatggctgt      5100
     ttaattgccc gctaagcccc catgcaggtg ggtgctggga aagattggta cgaagtgtga      5160
     agagggccat aggacacgcg ctgcatgtgt aacgctgaaa acatagtaaa ttccagaccg      5220
     cttacacaca ttgctctgga taaccccaca gacggatcgt cttccgataa cccctaatca      5280
     ctttttcttt tagaagtagc agccaactcg aaaggaaatg gcgcatcgct cagcagatct      5340
     cacactcatt ttggaacaag tggctcaatg agtacctacc agacctatgc agacggacaa      5400
     agtggcatca cccagtgcca cnactcgctg aaatggacac tgctcttatc tgtgataaga      5460
     atcttcatcg atctcaatgg aaaaagggag ttattctagc agtcacgcct ggacgcgacg      5520
     gacaggttcg ctcagccact gtaaagacga cggctggagt tctacaccgc ccaacctgta      5580
     tgctgggaaa gctagacata ttgtgaatca cgagcgtgct tgattnacgg tggtgggga       5639
//
ID   BEL-7_DPer-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   .
XX
DT   16-JAN-2012 (Rel. 17.08, Created)
DT   16-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DPer_;
KW   BEL-7_DPer-I; BEL-7_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-130
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1480-1480 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 130 BP; 56 A; 18 C; 28 G; 28 T; 0 other;
     tgttgtcgag aaaaattagc ttatatatac tcagttttaa gcaagggcac agatacccta        60
     cataaagaaa aaagagagaa gaaaaatggc cacaatatga aaaggcaaga aggtcacatt       120
     agtttgggca                                                              130
//
ID   BEL-7_DRh-I repbase;    DNA;    INV; 7686 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DRh_;
KW   BEL-7_DRh-LTR; BEL-7_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-7686
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1559-1559 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4870-5451] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2578..7653
FT                 /product="BEL-7_DRh-I_1p"
FT                 /translation="MENLQHAQDGRLIVRLPYSEDPSALGKSCDIATRRFL
FT                 SLERRTSPDIKILYNDFMAEYEKLGHMKQVLPSQIPKEHYFIPHHCVLKPE
FT                 STTTKLRVVFDASCKTSTGKSLNDLLYPGPVVQSDLFSILLRFRVHKYVFT
FT                 ADIEKMYRQVWMNPKDQFNQMIVWRYNPSEEIKYYRLKTVTYGTTSAPFLA
FT                 TKCLEHLANKNLEKWPLGSNALKNDFYVDDCLTGADTIIDAARIQEELNKI
FT                 LLPCGFKLRKWCSNSHHLLKEFSPEDIASNINLGTALEHTSVKTLGIIWSP
FT                 KDDNLCGKAQEHNTQTITKRVVASELGQIFDPLGLFAPVIIRAKIFLQNLS
FT                 VLKLDWDTEISDSLKERWEAFRQDLLCLNKMTIPRHIYDGKIPQKQELHIF
FT                 VDASEKAFGAVAYIRAIYKNKQTTVRLLCAKSKVAPLEKQTLPRLELCAAV
FT                 LGAELAEKVKKDLNLQSESIKCHYWTDSTIVLCWINAKASNFHTFVANRLS
FT                 KIQDTTCPNQWRHASSSLNAADVLSRGIPASQLSAHTLWLYGPLFLHGPEE
FT                 KWPALFKAPKDNTISLERKTKIVTLATVSLGEEIYGIKHGNSFNRLQRIIA
FT                 YMLRFCYRKNRKQTVLLELDELEQARRIIIRCIQQADFTNEFNHLRRHPER
FT                 PLPNSSKVASLHLHLDENSIIRVGTRVENAPISRDAMNPYLLPYNDNIVKM
FT                 LLHKLHEENMHCGQNTLKGIARQQYHIIKITPMVRNVIMKCVPCTRFRPKL
FT                 LSQIMGKLPEHRVSQNRPFLNTGVDYCGPFWIHHKVRGKRPDKAYIAVFVC
FT                 FSTKAVHLELVGDLTTAAFLGALQRFISRRGKCQTLYCDNATNFVGASNQL
FT                 KELKETIHSQQAKNSIVQLCNTKGVHFKFIPPRSPHFGGLWEAAVKSAKTL
FT                 LLKNVSTANLTFEQLSTVITNVEAVLNSRPLTPMSNDPNDLTVLTPGHLLI
FT                 GEALVAQPDPEPLRIKSLPEQWELVQRLKHTFWTQWSREYLTSLQQHSKWK
FT                 QAHKNVREGMMVIVKEDNVPMLQWPIGRIIKIYPGQDGYVRVADVKTATGV
FT                 FKRAIHKLAPLFRQEDPGEKRKEINEEDAEEETKEDQEPKRRKSPSLPMIS
FT                 MPLLILLLLLPLATAGPINITRFGSRPGIYYEKIGSTRLATADWTIIAYYD
FT                 LKPYLEDVKTFYTGTLKVGQMCSHIQPVQACAAVYNHFQHVYEEIKTENDL
FT                 LRMSRIRRSPLDIVGNIANSLFGVLDTEYAKRMSSTIQKVKSNEDYILELV
FT                 KNQTSIIDSTINIMKRDEATIDKRIKIMTQQMEDIANARLDSLKAFQWYIA
FT                 LTNQLSILAANLQRIQTEISHVLTNVHHNEISPLLVSPKQLRQHLNKLKIH
FT                 MPQGKMLPLINDDILQLYKLMRAEAKVVKDYVIFKLTLPLLSTQLFEIYNL
FT                 IPIPVIINNKMISLDIEFPIMAVNQHRDQFITMSSSEFDLCNSINDEEYIC
FT                 SDKQSMFSIENHCEFQMFNNKSSSLCQTKSSTKSFSWQRLRTKNQWIFSIK
FT                 SPMELSAVCDDQLSTITIDNIGLLSLDPKCTLRNPFLSVIGHQVTSTGTLK
FT                 LSYARFGSLNESLTPLPKVSHPNNSLKLSYNELNELSKELIPRIKIKMPNE
FT                 IVDLQHHHISAYVALILSLGVIIFYVWRRFQKKSHQLTSPSSKDIDLPERP
FT                 ALINSPRRHHQTPVSDAFEINVG"
XX
SQ   Sequence 7686 BP; 2714 A; 1504 C; 1399 G; 2066 T; 3 other;
     tcgctgtgtc tttggccctc ggcaacctat cgacactgag tatgttctag gggcaaccat        60
     tcctataaat aataaaataa aactacaaac attttggtga ccccgaccat tgcatgaaaa       120
     actagtcaac ttggcgacta atttctgcac atactttcta gacagattcc cgatcaactt       180
     ggcgatcgaa tcttctagag ttaaagttgt gaaaatcttg ctcaataaac cagatattga       240
     gcaaaattca taacaaaggg aattttgcct cgaataaatt tctgagcata ttcccgaaca       300
     acttgaaatt ttcaaggagt aacttaagtc aacttggcga ctccaataac acaactatta       360
     aaagtagaag aagtcaaccc ggcgactctt ccaacttaca acatccatat aatccgattt       420
     ctggagtcaa ctaggcgact cccagtataa tcgtcgatta tttttccgaa attgaagtag       480
     tcaacaagac ggcttttcaa ctggaaaaca ataaattcaa gtagtcaaca aggcgactct       540
     tgaataattc tggaagcggt agcatccaaa aaatttaaat tgtttgttta atcaatataa       600
     tccaatttac tggtgtcaac taggcgactc ccaggataat tgtcgattta ttttccaaaa       660
     tagaaacagt caacacggag gcttttcact ggaaaacaat atattcaagt agtcaacaag       720
     gcgactcttg aataattctg gaagcggtag cgtccaaaaa attaaaattg ttttttaaca       780
     atataatccg atttactgga gtcaacttgg cgactcccag gataatcgtc gattaacgtt       840
     cgagattgaa caacaaggcg gttcttcaag tggaactcaa caacttcaag tagtcaacaa       900
     gacggctctt gaatatttct ggaagcgttt gcatccaaaa ctaaaaacat ttatttaaca       960
     cacatattaa ataaaataaa aaatactttt taaataaaaa ggttttaaac tatttttggc      1020
     tctcttttct aatccgggtc ttcggccgcg gccggcgcgg gcaggaggca gccagtaaga      1080
     ggattccagc aaatgaaagg aaaaggcgtc gtattttgaa gacagaaaac gacaaattga      1140
     agagcattgg aaaaaattcg accaaggaaa taatagtatc ctaggattat taaagggtac      1200
     tccacatccg catgtttatt ttgaaaaaca gtactacaat caaatgcaga cgattgttca      1260
     tcagtcatcg aggaatttaa ccaaaaattc ttmatttacc ggcaacagaa acatcttcag      1320
     aagaggtgga tcatatacaa aagctgatca gacaccaagc agcggttctg gaatctatkt      1380
     caagaaccat gaaacatata actccagaaa acaaatttac ttataaaccg gtaatggata      1440
     atttatttaa acaaattgaa aatcttcatt ttgaaatcca caagttatgt ataacacctg      1500
     aagaagtggg ctatagtatg gagcgattta tctggcaaca atttcatgca tttttaataa      1560
     aatggttcat gaatcagcga taccaaaaaa tacaaaaaat gtggtatctt aaagctaatc      1620
     tttctggcga agcagaaagg ttagtcaggc atttagaatt aacagaagtt aattatgaca      1680
     ctgcctggac catgcttaaa gaacgtttca ataataagcg ggtcctttcg actgcaatat      1740
     ttgaaaaatt atttgatctc cctaatgtga cgaatgattc tcagtcaata aaaaatctgc      1800
     atgacaatat caatgaatcc ctgcaagcct aaaaaaatat tggaataaaa ccagatacag      1860
     gtccagtcct tctgttccat atgacaagaa aactaggctg tgcgtcaatt gtcttaaggc      1920
     agaccacatg accaagcaat gcatgtctaa atatacatgc ataaaatgta acaaaaaaca      1980
     caacacattg ctacatttag gtaacggaaa accaaatacc gaacctaaaa cgtccgcttc      2040
     tgctgctacg aaaaacagtt gtgagaacaa atacacactg ttagcaacgg ctagagtcat      2100
     agtgcaagga ctaaataatc aagaaggaga ttttcgcgca ctgctcgatt ccggatcaca      2160
     aattaatctg atttcagaaa gacttgttaa gcgtttatcg ttgcaactac aaccaacaaa      2220
     ccttcgcatt gagggagttg gaggtcagcc gcgaataagt aaaggacgcg ttagtgtatt      2280
     aattaaatca aaacatagcg attttgaaac aagagttgaa gcctttgttc ttcctcatat      2340
     tgtggcagat cagcctacgg aacaaataaa agtagctgat ttaaaaatct caaaaaatat      2400
     ccggctcgct gatccacatt tcgccaaacc aggaaaaatt gatatattgc ttggcgcaga      2460
     acatcacttt tccgttataa aacctgaaca aattaggtct tattcagacc aacctattct      2520
     ccagaacacc gaatttggtt ggataattgc tgggcaagta aacatgagtg caaaaaaatg      2580
     gaaaatcttc agcacgcaca agatggaagg ttaattgtca gattacctta ttctgaagat      2640
     ccctcagccc tggggaagtc ttgcgatatt gcgacaaggc gttttctttc gttggaacga      2700
     agaaccagcc cagacattaa aatattatat aacgatttta tggccgaata cgaaaaacta      2760
     ggtcatatga agcaagtatt acctagtcaa ataccaaagg aacattattt tattcctcac      2820
     cactgtgttc tgaaaccaga aagcactaca acaaaattaa gagtagtctt tgatgcttcc      2880
     tgtaaaacat ctacaggaaa atcattaaat gatttgcttt atccaggacc agttgttcaa      2940
     agtgatctgt tttcgattct attgagattc agagttcaca aatatgtttt tacggcggat      3000
     atagaaaaaa tgtatcggca agtttggatg aatccaaagg atcaattcaa ccaaatgatt      3060
     gtttggcgct acaatccgtc cgaggaaata aaatattacc ggctgaaaac tgtgacttat      3120
     ggcacaacgt cagctccatt tcttgccaca aaatgcttgg agcatttggc caataaaaat      3180
     ttggaaaaat ggccattagg atcaaatgca ctgaaaaatg atttctatgt tgatgactgc      3240
     ctaactggag cagatacaat tatagatgct gcaaggattc aagaagaact aaacaaaatc      3300
     ttgctacctt gcggatttaa actaagaaaa tggtgctcta attcacacca tctactaaag      3360
     gaattttcac cagaagatat tgctagcaac ataaatcttg gcactgcatt ggaacatacc      3420
     agtgtaaaga ctttgggaat tatttggagc cctaaggatg acaatttgtg tggaaaggct      3480
     caagaacata acactcaaac aattacaaaa agagtggtag cctctgagtt gggtcaaatt      3540
     tttgacccac ttggtctttt tgctccagtc ataatcagag caaaaatatt tctacaaaat      3600
     ctgtcagtcc ttaaactaga ttgggacaca gagatatcag attccctaaa ggaaaggtgg      3660
     gaggccttca gacaagactt gctgtgttta aataaaatga ctattccgag acacatttat      3720
     gatggaaaaa tacctcaaaa gcaagaacta cacatatttg tggatgcttc tgaaaaagcg      3780
     tttggtgctg tggcttatat aagagccata tataagaaca aacaaacgac tgtgcgccta      3840
     ttatgcgcta aatcaaaagt agcacctctt gaaaagcaaa ccctaccacg actagagtta      3900
     tgtgcagctg tgttaggtgc agagcttgct gaaaaggtga aaaaggatct taatttacaa      3960
     tcagaatcca ttaaatgtca ttactggaca gattccacca tcgtcttatg ttggataaat      4020
     gcaaaagcat cgaatttcca tacattcgtt gcaaataggt tgtcgaaaat acaagataca      4080
     acctgtccaa atcaatggag acatgcgtca tcaagtctca acgccgcaga tgtactatct      4140
     agagggatac ctgcatctca attaagtgca catacattgt ggttatacgg accactgttt      4200
     cttcatggac cagaagagaa atggccagct ctatttaaag ctccaaagga caacactatt      4260
     tctttggaac ggaaaacaaa aattgttact ttggcaacag tttcacttgg agaagaaata      4320
     tatggaatta aacacggaaa ttcattcaat cgcttgcaac gtataatwgc atacatgtta      4380
     cgattttgtt atcgtaaaaa tagaaaacaa accgtcttac tagagcttga cgaattagaa      4440
     caagctaggc ggattataat acgttgtata caacaggctg atttcacaaa tgaatttaat      4500
     caccttcgac gtcatcccga acgcccatta cccaatagca gcaaggtcgc atctcttcat      4560
     cttcatttgg acgaaaactc tatcataaga gtaggaacaa gggtggaaaa tgccccaatt      4620
     tcccgggatg caatgaatcc ctacttactc ccatacaatg acaacatcgt aaaaatgctg      4680
     ctacataaac ttcatgagga aaatatgcac tgtggtcaaa atactttaaa aggtattgca      4740
     cgacaacagt atcacatcat caaaatcact cctatggtta gaaacgtaat tatgaaatgc      4800
     gtgccatgta ccaggtttcg tccaaaatta ctttctcaaa taatgggaaa actacctgag      4860
     catagagtct cacaaaacag accattttta aataccggag ttgattattg cggacccttc      4920
     tggatacatc acaaagtccg aggcaagcga cctgataaag catacatagc agtatttgtt      4980
     tgtttctcca caaaggctgt ccatctggaa cttgtcggag atttaacgac tgcagcattc      5040
     cttggagcat tacagcgatt tataagtcgt cgcgggaagt gtcagaccct atactgcgac      5100
     aatgcaacaa atttcgttgg cgccagcaac caattgaagg agttaaagga aacaatccac      5160
     tcacagcagg ctaagaactc catagtccag ctgtgcaata cgaagggtgt tcactttaaa      5220
     tttattccac cgagatcccc tcactttggt ggattatggg aagctgcagt aaagtcagca      5280
     aagacgttgt tattaaaaaa tgtgtccact gcaaacctca cctttgagca gttgagcact      5340
     gtcataacaa atgtcgaggc agtattaaat tctcggccac ttactccaat gtcgaatgat      5400
     cctaatgacc ttacagtcct tacaccaggt catttattga ttggagaagc actagtcgct      5460
     cagccagacc cagaaccact tagaataaaa tcactacctg aacaatggga actggtgcag      5520
     cgactcaagc acacattctg gacgcaatgg tccagagaat atttaacaag cctgcaacaa      5580
     cactcaaaat ggaaacaggc ccataaaaat gtaagagaag gcatgatggt tattgtcaag      5640
     gaagacaatg tgcctatgct tcaatggcct ataggacgaa taataaaaat ttatccaggt      5700
     caagatggat atgtgcgagt tgcagacgta aaaactgcaa caggagtctt taaaagagca      5760
     attcataagc ttgctccact attccgtcaa gaagatccag gagaaaaacg caaggaaatt      5820
     aatgaagaag atgctgaaga agaaacaaag gaagatcaag agccaaaaag acggaaaagc      5880
     ccatccttac caatgatatc gatgccatta ttaatcttgc tgctgctatt accattagct      5940
     accgccggtc cgattaacat aaccaggttt ggttcgaggc caggaattta ttacgaaaaa      6000
     attggatcta ctcgactagc aactgcagac tggacaatca tagcttatta tgatttaaag      6060
     ccgtatctcg aagatgtaaa gacattttac acggggacac ttaaggttgg tcaaatgtgt      6120
     tcacatatac aaccagtcca agcatgtgct gctgtatata atcattttca acacgtttac      6180
     gaagaaataa aaactgaaaa tgatttactc cgcatgtcaa gaatacgtcg ttctcccttg      6240
     gacatagtgg gaaatattgc caacagctta tttggcgtat tagacacaga gtatgccaag      6300
     aggatgtcat caactattca aaaggtgaaa tcgaatgaag attacatttt agaattagtt      6360
     aagaatcaga cttcaataat tgattctacg ataaacatca tgaaacgaga tgaagctacc      6420
     atcgataaaa ggattaaaat aatgactcag caaatggagg atatagccaa tgctcgtcta      6480
     gattctctca aagcctttca atggtatatt gcattgacaa atcaattatc catattggcg      6540
     gcaaatcttc aaagaattca gacagagatt tcacatgttc tgacaaacgt tcatcacaat      6600
     gaaattagcc cactgctcgt ttctcccaag caacttcgac aacatttaaa caaactaaaa      6660
     attcacatgc ctcaaggaaa aatgctccct ctcatcaacg atgatatact tcaattatat      6720
     aagttaatga gggcagaagc aaaggtggta aaggattatg taatctttaa attaacactg      6780
     ccattattat caacacagtt atttgaaata tataacttga ttccaatacc ggtaatcatc      6840
     aacaataaaa tgatttccct tgatattgaa tttccaatca tggctgtgaa tcaacatcga      6900
     gatcaattca ttactatgtc atcaagtgaa tttgatcttt gtaattcaat taatgacgaa      6960
     gagtatattt gctcagataa gcaatccatg ttctctattg aaaatcattg cgagtttcaa      7020
     atgtttaata acaaatcatc gtcattgtgc caaacaaaaa gttcgacgaa atcattctca      7080
     tggcaaagat taagaacaaa aaatcaatgg atattttcaa ttaaatcacc aatggagtta      7140
     tcagcagtat gtgatgatca attatcaaca attacaattg ataatatcgg acttttatca      7200
     ttggatccga agtgcactct aagaaatcct tttctgagcg taattggcca tcaggtaacc      7260
     tctactggaa cattgaaatt atcgtatgct cgatttggca gtctgaatga atctttaaca      7320
     ccgcttccta aagtttcaca cccaaataat tcattgaagc taagttataa tgaattaaat      7380
     gagctcagta aagaattgat tccgagaata aaaataaaaa tgccaaacga gatcgtcgat      7440
     ctacaacatc accacataag tgcatatgtc gccctaattt tatcacttgg ggtgataata      7500
     ttttatgtat ggagacgttt ccaaaagaag tcgcatcaat taacttcgcc atcgtcaaag      7560
     gacatcgact tgccagagag gccagcgtta atcaactccc caagaagaca tcaccagacg      7620
     cctgtatccg acgcctttga gatcaacgtt ggatgatgtt gaacacctgt tcaacggccg      7680
     ggagta                                                                 7686
//
ID   BEL-7_DRh-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DRh_;
KW   BEL-7_DRh-I; BEL-7_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-321
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1560-1560 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 321 BP; 85 A; 82 C; 54 G; 100 T; 0 other;
     tgttagcgta ccacttgagt cgctaagcca cttgatgccc acggacagcg ccagctctgc        60
     ctgagctacc ttttctattt ttactaaccc tagcgtataa actccttgtg tgggagacaa       120
     ttatgatgac tctgtacctt tgtatatctt agaacataag caatgcaatg tatttttaac       180
     taacagcccc ataccacttc tttgctatgg tgcccccctt gactctgaaa acgtgtatat       240
     aaacccgacc ttttgcccta ataaaattag tactcaagca atacttgtgt attcaactac       300
     tctgcgttct acgagtgagc a                                                 321
//
ID   BEL-7_DSer-I repbase;    DNA;    INV; 5358 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5358
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2004-2004 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..5332
FT                 /product="BEL-7_DSer-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MNPIMHRTIQQRGACKGQITRTLNSATEFSERCDNVE
FT                 TLQVKLNRLVATFDHFMELSEDLVAFNMEEGYEDPGLDIPEYEDKFYSAHA
FT                 IFSKAIKEMGGQDYGQDQSNILLSSTVERLFEGQNQLLEQIHSSSGATDLR
FT                 FEKIRIPTFSGKYEDWSQFSDLFLSSVDNNNKLSKCQKFHYLKSYLDGEAL
FT                 SLIKHIAVCNDNYQDAWEKLENRYNKKTLIARTFVQKFLSLPTATNSNIAE
FT                 LRNVIDSADECIRGLHALNCDSRDVWLIHILLSKLSPEIKQAWANCNMSVK
FT                 EEVTINDLFSFLFAHCDTLESCQELHVIQPSRPAQSKRRQVAYHASGSNQQ
FT                 SRECIYCQGQHNIYACAEFKALDVLDRRTFARDTKLCFNCLSRSHQVRDCN
FT                 SSNTCRQCNAKHHTLVHPIESRSVPSAPAHLSTAEFNTIDQVADTAAVSHH
FT                 TLERANNQTILPTILANVIDTWGNRTTCRLLLDTGSTITMVAESFIQRIGI
FT                 SRTHARISVAGLGANPAGVSRGRASFTLLSRTTTATLEISGLIMSSLTSLI
FT                 PGQQVKTSSPIWKTICSLPLADPTFGAPGKIDVILGADQLWSIYTGNRREF
FT                 GIEYPIALHTNFGWVITGSFNDCTESWTHAQAHHAYEDLDSLVRSFMDMEQ
FT                 VHPSKATIDSSDPAEQHFLATHARRDDGVYIVQYPFKEPITPIGSTLPQAL
FT                 NRFAALERKFRKFPGLKQQYVEFMDDYLKRGHMELIPAAAAAEDSAHCNYL
FT                 AHHAVFKPDSTTTRCRVVFDGSGKDSTGQSLNSRLHIGPPIQRDLIGVCLR
FT                 FRQHLYVFCADIEKMFRGILVSDEHTQYQRIVWRKEENAPLDHYRLLTVTY
FT                 GLASSPFLAVRVLKQLAIDYADLYPNAAVILNRDAYVDDIPTGCDKIKDLI
FT                 ALKDELILLLSEAQFKLRKWSSNCSALLKSLPQENCEYPPDAFEQETSDRV
FT                 IKVLGLCWKPRTDYISFKLETPRITTTLTKRTLLSELAKIYDPLGLIAPTT
FT                 VLLKILFQDSWLSSVEWNEILPSQLCSRWQQFVFQMHVLETCRVPRYIAAP
FT                 HQSIELHGFADASSQAYAAVIYSRVEVNNGYAVKLIMAKTRVAPIKPISIP
FT                 RLELNAAHLLSKLISLVKQSLTIPISRINCWSDSEIVLHWLSSSPRTWNTY
FT                 VCNRTAEILEACPRSCWQHIRSGDNPADCASRGLFPKDLVDHQIWWNGPAW
FT                 LSQSRSTWPPVKAKFVLSTEEQACLEVKAEPKVNLHISDDGNELTCMINKA
FT                 SSWSRLLRTLSYCIRFVHRLRRRNQLSVFLSAWELQYARSRIFTHVQKEFF
FT                 KMEYKQLSTEQPLSKKSKLIRYNPFIDEQNVMRVGGRIDNSIANYDAKHPI
FT                 ILPKESPIAALLVRYQHAVSLHAGVEYTFHSLRQRYWILGARNLVRKTIFN
FT                 CRTCFMQRRHTSSQLMADLPNFRVQPARCFLHTGLDYAGPVTIKVSTGRTP
FT                 RFGKAWFAIFVCLCTKAIHIELVSDLTTSAFIAAFKRFWARRGPISDLYSD
FT                 NGTTFHGAKRELDEMQRIAIAQSQNEEISSFFSTHEINWHFIPPSAPHFGG
FT                 IWETGVRSIKMHLKRVTGSSALTFEEYSTLLIQIEGLLNSRPLCAPSDHSL
FT                 NPLTPSHFLTGQPLTSVPEPSFLDAHIDRLQRWRQLQAKVQGFWKRWNLEY
FT                 LSTLQTRTKWQQDAPNVALDTLVVLKEPNQPPSKWLLGRVIEVHPGQDQRV
FT                 RVATVKTARGIYKRPITKIAVLPLN"
XX
SQ   Sequence 5358 BP; 1500 A; 1223 C; 1171 G; 1464 T; 0 other;
     taacaaaatt tggtccgttc gagtagccgg ataaccgcga ttgcttttgt gtttattttc        60
     gtgaataata aaccacagat aaagactttt cttcgtaatg aacccaataa tgcatcggac       120
     gattcaacaa cgtggtgcct gcaaggggca aataactcgc acccttaaca gcgcaacaga       180
     gttttcagag agatgtgata atgtggaaac tctgcaggtg aagctgaatc gtttagtagc       240
     aactttcgac cactttatgg agctctccga ggatttagta gcattcaaca tggaggaggg       300
     atatgaagac cctggcttgg atatacccga atatgaagac aagttctaca gcgcgcacgc       360
     tatttttagt aaagccataa aggagatggg agggcaagat tatggccaag accagtctaa       420
     cattttgctc tcaagtacag tggaacgtct atttgaggga caaaaccaac tattggaaca       480
     aattcattcc tcatcgggag caactgattt aaggtttgag aaaattcgga ttcccacatt       540
     ttctggaaaa tacgaggatt ggagccagtt tagtgatctg tttctaagct cagtagacaa       600
     taacaacaag ctttccaagt gccaaaagtt tcattatctg aaatcatatt tggatggaga       660
     agctctgtcc ctaattaaac atattgccgt ttgtaatgat aattaccaag acgcatggga       720
     gaaattggaa aatcgttata acaagaaaac gctcatcgct cgaacgtttg ttcagaagtt       780
     tctgtcgttg cctaccgcta ccaattcgaa tatcgctgag ttacgtaatg taattgactc       840
     tgccgacgaa tgtattcgtg gcctgcacgc gctgaactgc gacagccgcg atgtatggct       900
     aattcatatt ttgctctcaa aattaagtcc tgaaatcaaa caggcttggg ccaactgtaa       960
     tatgtcggtc aaagaagagg tcaccataaa tgatttattt agtttccttt ttgctcattg      1020
     tgatactttg gagtcttgtc aggagttaca cgtaatacaa ccgtcaagac cagcccagag      1080
     taaacgccgc caagtcgcct atcatgcaag tggatcaaat cagcagtccc gcgaatgtat      1140
     ttattgtcaa ggtcagcaca atatatatgc atgtgctgaa ttcaaagctc tagatgtact      1200
     agaccgccgc accttcgcca gggatactaa gctatgcttc aattgcctga gtcgatctca      1260
     tcaagtccgg gattgtaact catcgaacac ttgtcgtcag tgcaatgcta agcaccacac      1320
     tttagttcat ccgattgagt cacgatcggt tccttcggct cctgctcatc tgtctactgc      1380
     tgaattcaat acgattgatc aagttgctga tactgccgct gttagtcatc acactctgga      1440
     gagggctaac aatcaaacca tactgccaac tattctggcc aatgtaatcg acacatgggg      1500
     caacaggacc acatgtcggt tattgctcga tactggatcg acaataacta tggtagccga      1560
     gtcgttcatc caaaggatag gaatttcacg cacgcacgct cgcatctcag tggctggatt      1620
     aggtgctaac ccggctggtg ttagccgagg acgtgccagc tttaccctgc tctcaagaac      1680
     cactactgca accctggaga tctctggtct aattatgagt tctctgactt ctttgattcc      1740
     aggtcaacag gtcaagacca gctctcctat ctggaaaacg atttgcagtc ttccattggc      1800
     tgatccaacg tttggagctc cgggaaaaat cgacgttatt ctgggcgctg atcaactgtg      1860
     gagcatatat actggaaatc gtcgagagtt tggtattgaa taccccatcg cactacacac      1920
     taattttggt tgggttatta caggcagctt caacgattgc accgaatcat ggacgcacgc      1980
     acaagcccac cacgcatacg aagatttgga ttcgttagtt cgatcattca tggatatgga      2040
     acaagttcat ccaagtaaag caacgataga ctccagtgat cctgcagaac aacactttct      2100
     ggcaacgcat gctcgcagag atgatggtgt atacattgtt cagtacccat ttaaggagcc      2160
     cattacgcca attggatcaa cgttgccaca ggctttaaac cgcttcgccg ctttagagcg      2220
     gaaatttcgg aaattccctg gacttaaaca acaatacgta gaatttatgg atgactattt      2280
     gaaaagagga cacatggaat tgatacctgc agctgcagcg gctgaggatt cagcacattg      2340
     caactatttg gcgcaccacg cagtgtttaa accagatagt actaccacac gttgccgagt      2400
     ggtatttgac ggctcaggaa aggattccac gggtcaatcg ctcaattcgc ggcttcacat      2460
     aggcccacct attcaaaggg atttaattgg agtatgtctt cgcttccgtc agcatcttta      2520
     tgtattttgc gctgacatcg aaaagatgtt cagaggaatt ttggtctcag acgagcatac      2580
     gcaataccaa cgtatagttt ggaggaagga ggagaacgcc ccactggatc attatcgact      2640
     gctgaccgtc acatacggat tagcttcatc gccgttctta gccgtcaggg ttcttaagca      2700
     gcttgcgatc gactatgcag atttgtatcc gaacgctgca gtcattctta acagagacgc      2760
     ttacgttgat gatattccta ctggatgcga taaaattaag gatctcattg cactcaaaga      2820
     tgaactaatt ctacttctga gcgaagctca atttaaactt cgaaagtgga gctcaaactg      2880
     ttccgcactc ttaaagtcat tgccacagga gaattgtgag tatcctcctg acgctttcga      2940
     gcaggaaact tctgatcgag ttattaaagt tttgggacta tgctggaaac caagaactga      3000
     ctatatctcc ttcaagttag aaacccctag aatcacaaca actttaacca aacgcacttt      3060
     gctttctgaa ctagccaaga tctacgatcc gctgggtttg attgcgccca caactgtgtt      3120
     gttaaagatt ctctttcaag atagctggct gagttctgtc gaatggaatg agatattgcc      3180
     ttcgcaatta tgctcacggt ggcaacagtt tgtatttcaa atgcacgtat tggaaacttg      3240
     tcgagtgcct cgttacatag cagcgccaca ccaatcaatt gaactgcatg gatttgcgga      3300
     tgcctcatct caggcatatg cagctgtcat ctatagtcgc gtcgaggtca ataatggata      3360
     tgcagtgaag ctgataatgg caaaaactcg cgtggctcct attaagccta tttccattcc      3420
     tcgacttgag ctaaacgcag cccacttact ctcgaaattg atttcactgg ttaagcaatc      3480
     actaactatt cctatttcca gaatcaattg ttggtcagac tctgaaatag tcttacattg      3540
     gctatcatca tctccacgga cttggaacac atatgtttgc aatcgcactg ctgagattct      3600
     ggaggcatgt ccacgaagct gctggcagca tattagaagt ggcgataatc cagctgactg      3660
     cgcatcgcga ggactatttc caaaggacct cgttgatcat caaatctggt ggaatggacc      3720
     agcttggtta tctcagtcac gttcaacttg gccacccgtt aaggccaagt ttgttttgtc      3780
     gacagaagaa caggcatgct tagaggtaaa ggccgagcca aaggttaatc tacacatttc      3840
     cgatgacgga aatgagctta cctgtatgat caacaaagcc tcctcatggt ctcgtttatt      3900
     gaggactctg agctactgca ttcgtttcgt ccatcgtctt cgtagaagga atcagctttc      3960
     ggtgttcctg tcggcgtggg aactacaata cgcacgatct agaatattca cccacgtcca      4020
     gaaggagttt tttaaaatgg aatacaagca gttaagcacc gaacagccat tgtcaaagaa      4080
     atctaagttg attcgataca acccctttat agacgagcag aacgtaatgc gtgttggtgg      4140
     tcgcatagac aattctatag ctaattatga tgcaaaacat cccataattc tgcctaagga      4200
     atctcccatt gctgctctac ttgttcgata tcaacatgct gtctcgctac acgctggagt      4260
     agaatacact tttcacagtt tacgacaacg atattggatt ctaggagccc gaaacctcgt      4320
     ccgcaaaacc atatttaatt gcagaacttg cttcatgcag cgaagacaca cgagttctca      4380
     acttatggct gatttgccca acttccgagt tcaacccgcc cgttgttttc ttcacactgg      4440
     tttggattat gctggacctg taacaatcaa agtatctaca ggtcggacac caagatttgg      4500
     aaaggcttgg tttgcaattt tcgtttgtct atgtacaaaa gcgatacaca ttgaattggt      4560
     cagtgatttg acaacatccg cttttatagc cgcctttaaa cgattttggg ctcgacgtgg      4620
     gccaatatca gatttatatt cggacaatgg cactacgttt catggggcta aacgagaatt      4680
     agatgagatg caacggatcg caattgccca aagtcaaaat gaagagattt caagcttctt      4740
     ctcgactcat gaaattaatt ggcatttcat cccgccttct gcaccccatt ttggagggat      4800
     ttgggaaact ggagtgcgat ctataaagat gcacctaaaa cgagttactg gcagcagtgc      4860
     attaacattc gaggaatatt cgaccctgtt aattcagata gaaggacttc tgaattctcg      4920
     tcctttgtgc gcacccagcg atcacagcct taacccgcta actccttctc attttctaac      4980
     aggtcagcct cttacttcgg taccggagcc atctttcctg gatgcacaca ttgacagact      5040
     gcagcgctgg agacaattgc aggccaaggt tcaagggttc tggaaacgct ggaacttaga      5100
     gtatctcagc actcttcaaa ctcgcacgaa atggcaacaa gatgctccaa atgttgcatt      5160
     ggacaccctt gtggttttaa aggagccgaa tcagccgcca agcaagtggc tgttgggaag      5220
     agttattgag gttcatcctg gccaggatca gagggttcgt gtggccacag ttaaaactgc      5280
     cagaggaatt tacaagcgcc ccattacaaa aattgctgtg cttcctttga actgaaccgt      5340
     cgttcagggg ggccggta                                                    5358
//
ID   BEL-7_DSer-LTR repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-343
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2013-2013 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 343 BP; 106 A; 69 C; 47 G; 121 T; 0 other;
     tgttgaggaa ttaatcggtc gttaattatt acttctttac ttgttattat tttgcatatt        60
     atcgtaccta gtttactgaa cataattgtc ttgtttacaa cataaagctt taagctcaca       120
     ctcatagcca aaatgcagta tatgtgcatg agtattggga catcacgcga tcttattttt       180
     cttctgcacg tttctatttt tcgccagtta gatctagttg gaatttaccc gcaaccgctc       240
     gcttatcgca cccgcttata aaacttattc taagacgctt catgaattaa taaacataaa       300
     acacctaaga caaaaataat acagtccact gcatttataa aca                         343
//
ID   BEL-7_DTa-I repbase;    DNA;    INV; 5617 BP.
XX
AC   AFFI01009484;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DTa_;
KW   BEL-7_DTa-LTR; BEL-7_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5617
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009484; Positions   12505    6889.
XX
CC   Positions [4652-5233] - Integrase core
CC   'ATACT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..1332
FT                 /product="BEL-7_DTa-I_1p"
FT                 /translation="MPAKHTKKPELAPHAPNGEEFYRAKADSLVRQLAALN
FT                 LFLTEDQLAKFDESELQVRLDLIERMYSDFDSSQLNLEQLVIEELESDARL
FT                 TFTTAYCETKGKICRHLNSEKRKSLANSTELHGILGGHAAAFKCNSRPTRL
FT                 PEFQLPRFGGAYIDWPDFYAMFNTVVGKNEDLTKVEKFQHLRACLDGIALD
FT                 AIRSLEPTENNYDRALELLTSRFDNKLLHFQAHVRSLFKLPGVEKGSASSL
FT                 RQLSDKANSHLRALATMASTQEIYDGLLIHLIASKLDIQNQERWEEGLPSK
FT                 ELPSWDKFSSFLIVFGIRYGKPST"
FT   CDS           1316..5617
FT                 /product="BEL-7_DTa-I_2p"
FT                 /translation="MVNQAPSKQVGKVANTFGRSTLVALSSAMPSCTLCES
FT                 REHYLTKCPQFLGLNPNQRYRESKRLHLCLNCLRKGHSLQQCKSGNCRHCH
FT                 QRHHSLLHLETNPVATLSQPVPEILPQGSSHVSVALSNTPPLASSSTRPEY
FT                 VFLATAIVYVKNRSGVFVPCRALLDSASQINFVTSRFANQLQLKIHRSFIS
FT                 ISGIGESSLASDKSVHIFAQSSNAKYSTSLSAAVTQSITDYHPHFDLNASE
FT                 WKIPENLELADPLFYKSQRIDLLLGASIFFELLCIGQIRLGSNLPTLQKTR
FT                 LGWIVSGCLTVGPSVRSSLVSLSQEARTHSESESISEILKRFWEIDNCADS
FT                 TKTISKEEALCEQLFQQEYTRLESGQYSVLLPAKTSFDALGDSYDRALLRF
FT                 KALETKLARNLELKSQYKAFIEEYLNLGHMSLTTKNAAAYQYYLPHHCVQK
FT                 LESTTTKLRVVFDGSAKSTSGYSLNDLLYAGPSIQPKIFTTLLRFRFFKVA
FT                 LCGDICKMYRCVRVTHPHQFLQCILWRDRPEDEVQVYSLDTVTYGTKPAAF
FT                 LAIRAMQQLSYDEEAEFPVAAKIIRTNFYVDDLIAGGDTIEEVVEIRQQIK
FT                 ALLERGHFPIRKWCSNEPAALKGVDDSDREKTLKFHDGTDVTKALGLSWDT
FT                 LSDSLLFSFSNEWTEKPATKRSILSAIAKFYDPLGLIAPIITKLKIFMQVL
FT                 WKDKLDWDESLPQSLHAAWLEHMSQIATVACLKFPRFVLQHNSSCEIHGFC
FT                 DASMAAYGACIYVRSENQGIVSSNLLCSKSRVAPLKTLTIPKLELSAALLL
FT                 SELVSQVAQIAPRSCTFHCWSDSTIVLSWIRQPPSDFNIFVSNRISQIQER
FT                 TKGMTWRHVPSRQNPADILSRGCTPIELVGSKLWSEGPQFLLTDSSTWPPH
FT                 SPPVMELPERRRSALVLSQEMDISHSCKFGNSFGRMQRVFAYVYRFLQRVS
FT                 KDRVRHKGELTVEEIKGGTHILIKGIQRVHFAEDHKALTLKMKLSPRSKLL
FT                 SLNPFIDAGGLMRVGGRLQNSQLDFDAKHPMILPKSHHITSAIIDHFHRKF
FT                 LHAGAQSLLAALRQRFWPIGGRKTVSAVINKCIQCFRLKPKLVEHIMAPLP
FT                 EDRVQPNRPFAISGVDFCGPFYSKSEVRNRPPTKCYIAIFVCFVSKATHLE
FT                 VVEDLSTQSFIAALKRFVSLRGKPQTIWSDNATNFVGAKNELTELRQLFLS
FT                 DPQNIELWNSLTSMEIRWNFIPPRSPHFGGLWEAAVKSAKYHFVRVVGKSI
FT                 LTFHELRTLVCEISAILNSRPLCPISENPDDISALTPAHFLIGSTFTAMDE
FT                 PDVTHLNIDRLSRWQRVCQMQQTFWRKWSSDYLSLLQERTKWRLPVSNVPA
FT                 GSMVLIKEDNIPPLRWRLGRVESTVTGEDGVERVAVIRTDSGLCKRAMRKL
FT                 AVLPLETTSLGSMTLPTGGA"
XX
SQ   Sequence 5617 BP; 1479 A; 1411 C; 1277 G; 1450 T; 0 other;
     ttggtgaccc cgacgtgatc gtgaacgtgt gtcaaagtta agcaattatt aaatatcgtt        60
     ttaataattc tacgcgccct ttgcatgtgt cgctgcaggg cacaaacaca caaactcttt       120
     tcgcatcgct ttgcacggta ttcgcatata ccgacataca tacattgtac agttagaatc       180
     ggctgctgta cagtctaaac tttttgcata acggaaagtg ttacacaact tcgctcgcca       240
     ggcaaaggtc gttgcccgtt gttttcggct ccgtccttac cctcaaattc gttctttggt       300
     tttttcgctg gcacaagtgc aggtgcagcg aaatttcgtg cggtgacttt cgtataccct       360
     ataagcggaa agtaaaaatt aaaaatgcca gccaaacata cgaaaaagcc tgagctcgcg       420
     cctcacgcac caaacggtga ggagttttat cgggcaaagg cagattctct ggtacgccag       480
     ctggcggcct taaatttatt tttgacagag gatcagttgg ccaagttcga cgaaagtgag       540
     ttgcaggtgc ggctggattt aatcgagcgc atgtactctg acttcgacag ctctcagctt       600
     aacctcgaac agcttgtaat tgaggagctg gagtcagatg cgcgcttaac ctttaccacg       660
     gcatattgtg agacgaaagg aaaaatctgc cgccatctca atagtgagaa gagaaagtcg       720
     ttggcaaatt caactgagtt gcatggcatc ctcggtggac acgcagccgc cttcaagtgc       780
     aattcgcggc ccaccaggct accggaattt caacttccgc gatttggcgg agcatacatc       840
     gattggccgg atttctacgc catgttcaac accgtagtgg gaaagaacga agatctaaca       900
     aaggtggaaa aatttcagca tcttcgcgca tgtttggacg gcattgcact ggacgcaatt       960
     cgctcgctgg agcctacgga aaataattac gacagggctt tggaattgtt aacgtcgaga      1020
     tttgataata aattattgca ctttcaggca catgttcgat ctttattcaa gctcccaggg      1080
     gtggaaaagg gatccgcaag tagtctgcgg cagctaagcg acaaggcaaa ttctcatttg      1140
     cgcgccctgg ctactatggc ctctacgcag gagatctatg acggcctctt aattcatctc      1200
     atcgcttcga aactggacat tcagaaccag gagaggtggg aagaaggatt accttccaag      1260
     gagctgccaa gttgggataa attctcatcg tttctcatcg tttttggaat acgctatggt      1320
     aaaccaagca cctagcaaac aggttggaaa agtagctaac acatttggtc gtagcaccct      1380
     cgttgcttta tcatcagcta tgccatcatg taccctgtgc gagtctaggg aacattattt      1440
     gacaaaatgc ccacagttct taggtttgaa ccccaatcag cggtatagag agtcaaaaag      1500
     gctacatctt tgtctcaact gcctacgaaa agggcacagc ctacagcaat gcaagtctgg      1560
     caactgtaga cactgccacc agaggcatca tagtcttctt catttggaaa caaatcccgt      1620
     tgcaaccctg tcccagcctg ttccagaaat acttccgcaa ggatcatctc acgtctctgt      1680
     agccttgtcc aatacaccgc ctttagcttc atcgtcaact agacccgaat acgtcttcct      1740
     tgctaccgcc atagtctacg taaaaaatcg ctctggcgtg ttcgtgccat gcagggccct      1800
     gctcgattcg gcttctcaaa tcaacttcgt cacatctcgt ttcgccaatc agcttcagct      1860
     caagatccat cgttcattca tctccatatc aggaatcggt gagtcctcgc tcgcttcgga      1920
     taaatcggtt catattttcg cccagtcgag taacgcaaag tatagcactt cgctctctgc      1980
     tgctgtcacc cagtcaatca ccgattacca cccgcatttc gatctcaacg cgtctgaatg      2040
     gaaaataccg gaaaatctcg agctcgccga cccgctcttc tacaaaagtc aacgcatcga      2100
     cttgcttctt ggagcaagca tattcttcga gctgctttgt attggacaaa ttcgattagg      2160
     cagcaattta cccactctgc agaaaaccag acttggctgg atcgtctcag ggtgtctaac      2220
     agtaggacct tccgttcgct catctttagt ttccttatct caagaggcca gaactcattc      2280
     ggagtcggag tcgatctctg agatactaaa gagattttgg gaaatcgaca attgcgcaga      2340
     ttctacaaaa accatttcga aagaagaagc tctatgcgag cagctatttc agcaggaata      2400
     cactcggctt gaatctggcc aatattcggt actacttcct gccaaaacta gtttcgatgc      2460
     tctaggagat tcatatgatc gtgcacttct tcgttttaaa gcactcgaga ccaaattagc      2520
     tagaaattta gagctgaagt cgcagtataa agcctttata gaggagtacc tgaaccttgg      2580
     ccacatgtct ctaacaacta aaaatgctgc agcttatcag tattacctac cccaccactg      2640
     cgtccaaaaa ttagaaagta caacaacaaa gctgcgagtt gttttcgacg gctcagcgaa      2700
     gtccacttcg ggatattcgt tgaacgattt gttgtacgct ggtccttcca ttcagccaaa      2760
     aatcttcact accctgcttc gttttcgatt tttcaaggtt gctttgtgtg gggatatttg      2820
     caaaatgtat cgctgcgttc gggttacgca tccccatcag tttctgcaat gtattttatg      2880
     gcgcgatcgg ccagaagacg aggttcaagt ttactcgctt gacaccgtaa cctatggcac      2940
     gaagcctgct gcttttttgg caattcgtgc aatgcagcag ctatcctacg atgaagaagc      3000
     ggaatttcca gtagcagcta aaatcatacg cacaaacttc tacgtggatg atctaatcgc      3060
     aggaggagac accattgagg aagtcgttga aattcgtcaa caaatcaagg cgctcctgga      3120
     aagaggacat tttccaattc gcaaatggtg ttccaatgaa cctgcggcgc taaaaggagt      3180
     ggatgactcg gatcgggaga aaactttaaa gttccacgac ggaaccgacg ttacaaaagc      3240
     gttaggttta tcttgggaca cgctatcgga tagcttgctt ttcagcttct caaacgaatg      3300
     gacagaaaaa cccgcaacca agcgcagcat cctgtcggct atcgctaagt tttacgatcc      3360
     ccttggacta atagccccaa tcataaccaa acttaaaatt ttcatgcagg tcttatggaa      3420
     ggataagctc gactgggatg aatccctgcc gcaatctttg catgccgctt ggttggagca      3480
     catgtcgcag atcgccacag ttgcttgctt gaagtttcca cgctttgttc tacagcataa      3540
     ctcatcgtgc gaaatacatg gattttgcga tgcaagcatg gcagcttacg gagcttgcat      3600
     ttatgttcga tcagagaacc aaggtatcgt ttcgtcgaac ctactttgct caaaatcaag      3660
     agtcgcaccc ttgaagaccc tcacgattcc gaagctagag ttatctgccg ctcttttact      3720
     ctccgagctt gtctctcaag tggcacaaat tgcacctcga tcttgcactt ttcattgttg      3780
     gtcagattcg acaatagttt tgtcttggat ccgacaacct ccatcagatt ttaacatttt      3840
     cgtttcgaac aggatttcgc agatacagga gagaactaag ggaatgactt ggaggcacgt      3900
     accgtcacgg cagaatccgg cggacatctt atctcgagga tgtaccccta ttgagctggt      3960
     gggatcaaaa ctttggagtg aaggaccgca gttcttactc actgattctt ctacatggcc      4020
     ccctcactcg ccccctgtca tggaacttcc tgagcgtaga cgcagcgcat tggtgctgtc      4080
     acaggaaatg gacatctcac acagttgcaa gtttggaaac tcgtttggga gaatgcagag      4140
     agtcttcgca tacgtatatc ggttccttca aagggtcagc aaggatcgag tacggcataa      4200
     aggagagctt acagtcgagg aaatcaaagg tgggactcat atactcatta aagggattca      4260
     gcgcgtgcac tttgccgagg accacaaggc actaaccttg aagatgaagc tgtcgccgag      4320
     gagcaaactt ctgtccttaa acccatttat agatgcagga ggtctaatgc gcgtcggcgg      4380
     acgacttcaa aattcgcagc tggacttcga tgcgaagcac cctatgattc ttcccaagtc      4440
     tcatcatata acctcagcta tcattgatca ttttcatcgc aagttccttc atgcaggagc      4500
     acagagcttg ttagccgctt tacgacagag attctggccc attggagggc gaaaaacggt      4560
     ttctgctgtc atcaacaagt gcattcaatg tttcagatta aagcccaagc tagtcgaaca      4620
     catcatggcg ccgctcccgg aggaccgagt gcagccgaac cgcccattcg ccatctctgg      4680
     agtggacttt tgtggcccct tttattcgaa gtcagaggtc agaaacaggc cccctacgaa      4740
     gtgctacata gccatattcg tttgcttcgt cagcaaggct acacacttgg aagttgtcga      4800
     agacctttca acgcaatcgt tcatagcagc cctgaagcga tttgtaagcc tgaggggaaa      4860
     gcctcaaacg atttggtcag acaacgcaac gaacttcgtg ggagccaaaa acgagctaac      4920
     tgagcttcgg cagctgtttc tgagcgatcc tcaaaacatt gagctatgga attcccttac      4980
     gtcgatggag atccgttgga atttcatccc acctcgttcc ccgcacttcg gtggcctgtg      5040
     ggaagccgcg gtcaaatccg caaaatatca tttcgtccgt gttgttggaa aatcaattct      5100
     cacatttcat gaactgcgca ctttagtttg tgaaatttcc gcaattttaa actcacgacc      5160
     gctttgtccc atttcagaaa acccagatga cattagtgct cttactcctg cacactttct      5220
     cattggatct acattcaccg caatggatga gcctgatgtc acccatctga acatcgatcg      5280
     cttgagccgg tggcagcgcg tatgccaaat gcagcaaacc ttctggcgca aatggagctc      5340
     cgactacctt tcgctgctgc aggagcggac caaatggcgc cttcctgtga gcaacgtacc      5400
     ggcaggcagc atggtcctca tcaaggagga caacataccc cctttgcggt ggcgcctcgg      5460
     cagagttgag agcaccgtca ccggagagga tggcgtcgaa cgagttgcag tcatccgaac      5520
     cgactctgga ctgtgcaagc gggcaatgag gaagcttgcg gtactgcccc tagaaaccac      5580
     ttcacttgga agcatgactc ttccaacggg gggagca                               5617
//
ID   BEL-7_DTa-LTR repbase;    DNA;    INV; 358 BP.
XX
AC   AFFI01009484;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DTa_;
KW   BEL-7_DTa-I; BEL-7_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-358
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009484; Positions    6888    6531.
XX
SQ   Sequence 358 BP; 107 A; 89 C; 57 G; 105 T; 0 other;
     tgtcgggagc agccgcagaa atcaatttaa aatcatttaa aaacccattt attgtttgcc        60
     atttggtcag catcactgac aacaacaatg taaaccaaag tttatctatt ttgcataaga       120
     caagccgaga taagcgactg cgctcgctgc tctctcggac ctacgcactc tcatccttta       180
     cattcgcttt tgatcgctgg tacgaagcag ttcgttcgct ctcgcaacca caataaacgc       240
     atttaaaatc gaacaaattc tcggcttttt cttttggcac cgttctgaca cacgcataat       300
     tctctttcgt taaaatattc gcaaaaaagg tggcataaat taatgcctcc tctaaaca         358
//
ID   BEL-7_DWil-I repbase;    DNA;    INV; 5453 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DWil_;
KW   BEL-7_DWil-LTR; BEL-7_DWil-I.
XX
NM   BEL-7_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5453
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..5452
FT                 /product="BEL-7_DWil-I_1p"
FT                 /translation="MATTGNCGLCQEPANQEMLTCSRCASQFHCTCCGSKN
FT                 SATSSSWMCETCRHVPDEGEHNLETESHFKVNXPGDKDQHVEDEAMPEDQQ
FT                 ILLQQLEDEMCLEREYLRRKYALLHPRVQSNGEAKNHPQHAAGIPRYIMMT
FT                 DDSATNTPQATSTRAQSMPCKANGITPQQVAARQSMPRELPVFKGDPREWP
FT                 LFISTYETSTRIGGYSNEENAMRLQRCLKGRALEAVRDSLLFPEMLPSVIS
FT                 TLRMYFGRPEHIIKLLMENVRNLPPPKGKLEPLIEFAFAVKNMCATIRASK
FT                 LDAHLNNPTLLQELIEKTGPDMMLNWALHSKSIPYPNIQHLADWLFELAEA
FT                 ASRVSTPNILLESDKKRTNRGVMHTHTAAPTDNHKHTFCAICKGHHKPVSC
FT                 EKLLRMSVEARWNAINNHHLCAQCLKNHKGSCWSRVACDINGCKAKHHRLL
FT                 HKEVTESVLHNHRGSLTNQPECYVRIVPVTLHSNSKSVDIYAFMDDGSTLT
FT                 LVEEKLADALEVKGFANPLCIRWTGDVSRQEPESKQLNLRISKQGXGNKLF
FT                 KVNEVCTVKSIGLSAETMIADRIKQRYPHLKNLPIPSFVNAMPQMIIGSNN
FT                 PNLIASLKVREGKWQQPIAAKTRLGWTIYGGSGRSGGGLNLHRCQCDLDLH
FT                 EMVKKHLLTEEKSPPMFTKSPDEERSLQILEDTVSYSSRMYTTGLLWKDGP
FT                 RVFPNSLPVAKRRLLCMQKKMAADPPFANELHSQIQNLIAKGYARKLPEEE
FT                 VMEKPENAWYLPIFTVRNPHKPDRVRLVWDAAAQSSGVALNDFLLKGPDLL
FT                 VPLLQIMYNFRMRAIGVSGDIAEMFHRIAVREEDAKAQRFLWQNQTTGVVE
FT                 TFQLNVLTFGATCSPCIAHYVRDLNAKKHADEFPSAAKAIQRSHYVDDYID
FT                 SCHSEEEAITLAKEVREVHARGGFHMRKWCSNSKRVLAALRDTTTYEEKQF
FT                 FNSEEIHSYEKILGMRWSPRQDAFTYALKFVRLKRNIIATKVAPTKREILQ
FT                 VLMSVFDPMGFVSCIMMYLKILLQQVWRSKIDWDEEIPPNLQDMWQSWLSF
FT                 LPLIENVRIPRCYFKNWHAQDCRVQIHVFVDAGEDAYSAVAYFRIEQNNQI
FT                 LLSLVSAKSKVAPLQPLSIPRLELQAAVTGARLMKNIIAQHEIDFEECYLW
FT                 TDSKTVLAWLDGDPRRYQQYVMFRIAEICELTEARNWRWVPSKLNVADIAT
FT                 KRQHRPETYTQWFEGPKFLKLPPADWPTETTNERTVTEELRPRFLHMRREP
FT                 ARINYEYFSKWNRLTRAIACWLAYKRKLINKIRKSNENTNQLASQINEARM
FT                 FLYRNIQQECYNEEYTAIENGHHVCRSSPLWRLQLFLNDQGVLCVRDRASR
FT                 FAGIPEGRIALPTQHWVTKLIVRHYHEKYYHMNHETTVNEVRQKYFIPKLR
FT                 PLLKGIRRNCQQCKLSSARPIAPLMAPLPRARLGAFKPAFTYVGVDYFGPL
FT                 TVIDGRKSLKRWGMLITCLTMRAISIEIVHSLTTNSCLMGLRRHISRRGTP
FT                 KEIYSDNGTNFRGTDAFLRDKLQLDDAKMHRELSQQEISWYFNPPSAPHMG
FT                 GAWERLVRSVKTVLYRITPNQKFSDESLLTAMAEVEMTVNSRPLTYVSLDD
FT                 EDQEALTPNHLLLGSSNGEKPICDPEQIDYKWSLRQSEMFANLFWKRWVKE
FT                 MLPNITRRSKWHKKVKPIGVGDIVLIVDENQRRNTWTKGRVVEVTTAEDGQ
FT                 VRQAKVQTQLGVLSRPAVKLAVLDVGKDEASSSGSLAGRG"
XX
SQ   Sequence 5453 BP; 1728 A; 1248 C; 1275 G; 1199 T; 3 other;
     attcttttta atttctactg gaaattaaat ttactctttc gtaaagaatt ttgagcaaat        60
     tctttaattc ctacggtgta gtagagctac agagacctaa agaggaggga ctacacaaat       120
     cccaaggaaa gaacaaattt aaattttacc acgcgtaaaa ttacgtatag acatggcaac       180
     gactggaaac tgtggtctgt gccaggagcc ggccaaccag gaaatgctca catgctccag       240
     gtgtgcatct caattccact gcacctgctg cggatcgaaa aacagtgcca cctcgagttc       300
     ctggatgtgc gagacatgtc gccacgtgcc tgatgaaggc gaacataacc tcgaaactga       360
     atcacatttc aaggttaacc amccaggtga caaagatcag cacgtggaag atgaagcaat       420
     gccggaagat cagcaaatac ttttgcaaca attagaggac gaaatgtgcc tcgaaaggga       480
     atatctgcgc cgtaagtacg ccctactcca cccgagagta cagtcaaacg gagaagcgaa       540
     gaaccatcca caacatgctg ctggaatacc tcgatacata atgatgacgg atgatagtgc       600
     caccaacact ccacaggcga cgagtaccag agcgcagagc atgccgtgca aagccaatgg       660
     cataacacca caacaagtag ctgctcgaca atcaatgccg agggaattac cagttttcaa       720
     aggagatcca agagaatggc cacttttcat aagcacctat gaaactagca cccggatcgg       780
     tggatacagc aacgaggaga acgctatgcg tctgcagaga tgtctgaaag gtagggccct       840
     tgaagccgtg cgagacagct tactgttccc agaaatgctg ccgagcgtta taagtacttt       900
     gagaatgtac tttggacgcc cggaacacat aataaaactg ttgatggaga atgtgcgaaa       960
     tttgcctcct ccaaagggca agctagaacc gctgatcgag tttgcatttg cggtgaaaaa      1020
     tatgtgcgct accattaggg caagcaagct agatgcgcac ctgaacaacc ctacgttatt      1080
     acaagagctt atcgagaaga cgggacctga tatgatgctt aactgggccc tacattcaaa      1140
     atccataccg tacccgaaca tacagcacct agcggattgg ttgtttgagt tggctgaagc      1200
     agcgagtcgt gtatcgacgc ccaacatatt actagaaagc gacaagaaga gaaccaacag      1260
     aggagtgatg catacacata ccgcagcgcc cacagataac cataaacaca cattctgtgc      1320
     gatatgcaaa ggacaccaca aaccagtgtc ttgcgaaaag ttgttgcgga tgtcagtcga      1380
     agccaggtgg aacgcgataa ataaccatca cctatgtgct cagtgcctca aaaaccacaa      1440
     gggatcctgc tggagtcgcg tagcttgcga cataaatggc tgcaaagcaa aacatcatcg      1500
     tcttcttcac aaggaggtga cggaaagcgt cctgcacaat catcgtgggt cactaaccaa      1560
     ccagccagaa tgctatgttc gaatcgttcc agtcactttg cactccaatt cgaaatccgt      1620
     cgatatctac gcatttatgg acgacggatc gactctaaca cttgtagaag aaaaattggc      1680
     tgatgcgctc gaagtgaaag gtttcgccaa tcccctatgc attagatgga ccggcgatgt      1740
     tagtcggcag gagccggaat ccaagcagct gaacttgaga atctcaaaac aaggacwggg      1800
     taataaatta tttaaagtaa atgaagtctg cacagttaag tccattggtc tctcagccga      1860
     gacgatgata gcagatagga taaaacagag atatccgcac ttaaaaaact tgcctatccc      1920
     gagctttgtt aacgcaatgc ctcaaatgat aataggcagt aataatccga atctcatagc      1980
     ttcgctaaag gtgcgcgaag gaaaatggca gcaaccaatt gctgcaaaaa cgagactagg      2040
     atggactata tatggcggat cgggacgatc tggtggagga ctcaacctgc atcggtgtca      2100
     atgcgatctg gatttgcatg agatggttaa aaaacatttg ctaacggagg aaaaatcacc      2160
     gccgatgttt accaagtccc ctgatgaaga gcgatctcta cagattctgg aggacactgt      2220
     tagttacagc tcgcggatgt acaccacggg attgctttgg aaagatggtc cccgtgtatt      2280
     tccaaatagc ctgccggtag caaaacgacg actcttatgc atgcaaaaga aaatggcagc      2340
     agaccctcct tttgcaaatg agctacatag tcaaatacaa aacttgatag ccaaaggata      2400
     tgccagaaag ttgccagagg aagaagtcat ggagaaaccc gaaaacgcat ggtacttgcc      2460
     catttttact gtacgaaatc cacataaacc tgacagggtc agattggtgt gggacgcggc      2520
     agctcaatca tcaggagtag ccctaaatga ctttcttctg aagggacccg atttgctcgt      2580
     gcccttgctg cagattatgt ataactttag aatgagagca attggcgtga gcggtgacat      2640
     cgccgaaatg ttccatcgaa tagcagtaag agaagaagac gctaaagcac aacgattcct      2700
     atggcaaaat cagacaacag gcgtcgtaga aactttccaa ttaaatgtgt tgacatttgg      2760
     agccacgtgc tcaccctgta tagcgcacta tgtgcgcgac ctgaacgcta aaaaacacgc      2820
     agacgagttt ccttcggcag ctaaagctat tcagagaagt cactacgtag acgactacat      2880
     cgattcatgc cattcagaag aagaagccat tacattagcg aaagaagtta gagaagtcca      2940
     tgcacgcgga ggtttccata tgcgcaagtg gtgttcgaat tccaaacggg tactcgctgc      3000
     gcttcgcgac acaacaacct acgaagaaaa acagttcttt aacagtgaag agatacactc      3060
     ttatgagaaa atattgggca tgcggtggag cccacgtcaa gatgccttca cctatgcact      3120
     aaagtttgta cgcctgaagc gcaacataat agcgacaaaa gtcgcaccaa ccaaaaggga      3180
     aattttacaa gttttgatgt cagtttttga ccccatgggt tttgtatcct gtataatgat      3240
     gtatctcaaa atactgctcc aacaagtttg gcgatcgaag attgattggg atgaggaaat      3300
     accacccaat ctgcaggata tgtggcaatc atggctgtcc ttcttaccct tgatagagaa      3360
     cgtgcgaatt ccgagatgct attttaaaaa ttggcatgca caagactgcc gagttcaaat      3420
     tcacgtattc gtggatgcgg gagaagacgc ctactctgcc gttgcgtatt tccgtatcga      3480
     acaaaataac caaatacttt tgagtctcgt ttcagccaaa tccaaggtag ctccgttgca      3540
     gccgctctcg ataccccgct tggagctaca ggcagcagta actggagcgc gactgatgaa      3600
     aaacataata gcacaacatg aaatcgactt tgaggaatgt tacttatgga ccgactcgaa      3660
     aacggtacta gcgtggctcg atggagaccc acgacgatat caacaatatg taatgtttag      3720
     gatagccgag atatgtgagc tcacmgaggc cagaaactgg agatgggtac caagcaaact      3780
     aaatgttgcg gacatcgcca ccaaacgaca acataggcct gaaacataca cacaatggtt      3840
     cgaaggaccc aaatttttaa aactaccgcc ggcagattgg ccgacggaaa ctaccaatga      3900
     aaggacagtc actgaggaac tgcgtcctcg tttccttcac atgcgaaggg aaccagcaag      3960
     aatcaattac gagtactttt caaaatggaa tcgattgaca agggcaatag catgttggct      4020
     tgcctataag aggaaattga tcaacaaaat acgtaaatca aatgagaata caaaccaact      4080
     ggcatcccaa attaatgaag ccagaatgtt tctataccgg aacatacaac aagaatgtta      4140
     caacgaagag tacacagcca tcgaaaacgg ccaccacgtt tgccggagca gtccactatg      4200
     gaggttacaa ctcttcctaa atgaccaggg agtattgtgt gtacgcgatc gagccagtcg      4260
     cttcgctggc atccctgaag gacgaatcgc tctacccacc caacactggg ttacaaagct      4320
     gatagtccgg cactaccatg aaaaatacta tcacatgaat catgagacta cagtaaatga      4380
     ggtgaggcaa aaatatttta ttccaaaact aagacctctc cttaaaggga ttcgtcgaaa      4440
     ttgccaacaa tgtaagctga gtagtgctcg acccattgca cccttaatgg cgcccctacc      4500
     gagggctaga ctgggtgcat tcaagccagc gtttacgtat gtaggagttg attattttgg      4560
     gccgctaaca gtcatcgatg gaagaaagtc attgaaaaga tggggcatgc tgataacctg      4620
     cctcacaatg cgagcaataa gcattgagat cgtgcatagt ctaaccacaa actcatgcct      4680
     aatgggctta agacgccata tatcgcgccg aggcacacca aaggaaatat atagcgataa      4740
     cgggactaat tttcgaggga ccgatgcctt tcttagagac aaacttcaac tggatgatgc      4800
     gaaaatgcat cgagaattgt cgcagcagga aatatcgtgg tacttcaacc caccgtcagc      4860
     tcctcacatg ggaggagcct gggagcgctt ggtgcgttcc gtcaaaaccg tgttataccg      4920
     tataacacca aatcaaaaat tctcagatga aagtcttctt accgccatgg cagaggtgga      4980
     aatgacggtc aactccaggc ccctgacata cgtgtccctg gacgacgaag atcaagaagc      5040
     tcttacgcca aatcatctgt tgcttggctc atcaaatgga gaaaaaccga tttgcgatcc      5100
     ggaacaaatc gactataaat ggtcgctccg ccagagtgag atgttcgcca acctattttg      5160
     gaagcgctgg gtcaaagaga tgctaccaaa cataacacga aggtccaagt ggcataaaaa      5220
     agtaaagcca attggtgtag gcgacatcgt acttatagtg gacgaaaatc agcgtcgtaa      5280
     tacctggaca aagggtcgag tggtcgaagt gaccaccgca gaggatggtc aagtccgcca      5340
     ggcgaaggta cagacacaat taggtgtcct ctccagacca gcagtaaagt tagcagtcct      5400
     cgatgtcgga aaagatgaag caagctccag tggctcgctt gctgggaggg gaa             5453
//
ID   BEL-7_DWil-LTR repbase;    DNA;    INV; 436 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_DWil_;
KW   BEL-7_DWil-LTR; BEL-7_DWil-I.
XX
NM   BEL-7_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-436
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-436
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 436 BP; 150 A; 87 C; 79 G; 120 T; 0 other;
     tgttgccgaa attcgggcct gcgaataaac tttgtaccac tgtactacaa aacggcactt        60
     tgtccgaaca aacagaatga cgctctttaa aaactctaaa actctctctc tcatcttact       120
     cttgcggtac tttattatac ataagtagac acataagcgc gaaaaatacg cagctgcatt       180
     gatctaagta catacataag aaccgcgtgt tcagttgttt tttcgtagcc aagaggccaa       240
     gactagagta agtgaaatga gattgtacaa ttattagtta taagaaaatt tgtaaaataa       300
     cctgaaatta cttgcagaat taaaaagctt accgcttacc gcttacggct tacgctgacc       360
     taaccagagg aattaatgga ttaaatttat ttcaaaggca ctggcggagc tagattaact       420
     agtcgaacga gcaaca                                                       436
//
ID   BEL-7_FoCa-I repbase;    DNA;    INV; 6541 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-6541
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2588-2588 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1010..6511
FT                 /product="BEL-7_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 and ribonuclease H."
FT                 /translation="MSSSSPTTTTTAAMSNPLFATFAMPFSSSPDYWASLT
FT                 SSPSVSTPHTFFGATPPPVSTPQNYWTAPQSTPYTFSAPPPPNSPTVTPVS
FT                 TRHAFSNATPPPPSNPIITSVPTPHTFSAAPPPPPNIPIVTTAHHTTTPXV
FT                 SAATGSTIPPPQATYYWTAPQSTPTMPPYTIAAPPPPPLQNPLVNPPISSS
FT                 ADKILARQVQGRDLPTFTGRPEEWPAFFVAFLTSTNFCQFSHAENLVRLQR
FT                 CLKGEALKMVQCLLVSPDSVPIVIQKLKMRFGRPDQIIENLIGKVQGLPPV
FT                 KMEKMDTLIDLGIAVDNLAATIKALNCTQHLCNPMLIKELVKKLPSTSQLE
FT                 WARHMQLSGHPLPTVDFFAEWLTSYSDAACVLCPPTISHEVNHHERKRRNP
FT                 HDRVMVAEEEKKKTRGDHRDNRPRQTKPPEKCPCCKSNNHKLHACRDFADK
FT                 PTDERWELVKNNHLCFRCMASGHGARDCKFPRSCGVDGCEKPHHKMLHIAA
FT                 PRRRQADEPENPRRPAAVPPEMVNTGEEVPYINLMVLPVTLEGPRGSISTF
FT                 MMLDCGSTLTVIESTIAEAIGLRGESRQIKVGGFQTDPTVLNTKVVSLRIK
FT                 SKDGSFVHDLKNVKTVDKLKLREQSVRKSLLKKWPHLQGIDLDTYDCKRPG
FT                 ILVGMDNPTLFLQKDCRVGKGSNSNSPIAIRTPLGWALMGRTAWAGREQYA
FT                 YHMQEVDPLHQLVKDQFSTESFGVKPLVEKPRTKEDKRAQEILDASTRRVE
FT                 GGWETALLWRDDHVQLPESYSNAYRRLMSMERKMDRDPEFLKSYCTKIDEY
FT                 LSKGYARILSPEEAATTTSKTNYIPHFMAYNPKKPGKLRFVFDAAAKNHGR
FT                 SLNDHLLQGPDKLIPLPNILLKFRQRQIALTADIEDMFHRVKVKQDDAQAQ
FT                 RFLWRGSDRPRPPDTLEMGVLIFGATCSPTCAQEAKNKNAAEFQQQFPDAV
FT                 DAIINRHYVDDLLDSCDTVEQAKKRFEEVRTIHAAGGFNLRNWLSNSPEVV
FT                 AHIPEELRASNMKDLQMGEDNVIERVLGLFWRPESDVFTFSLNFVKAREEI
FT                 LSGKKVPTKREMLSLVMSIYDPLGFLAILTIKAKILLQQAWRSEVGWDDEI
FT                 PRSTFESWRIWLQEVQKIPTFRLPRCYSLTFTSADEVQLHIFVDASEEAFG
FT                 AVGYFRIQKEEKVEIALVMGKAKVAPLKSLSIPRMELQAALMGVRLAHTIC
FT                 QQHEVKIDRTIFWSDNTTVLGWIRSDGRKYVQFVANRVGEIQELSTPEQWR
FT                 WVPTLENVADELTRLESPCDFQPSSRWVNGPPFLKQSEENWPVPTCTKIKE
FT                 SPEEEMKTHCVLHFHETAPLIDISRFSLWRRLINTTAYVFRVRDITMKKSP
FT                 LYSKELCPEELVRAQQWWWRTSQQESFPNEWECLSAELPLPKKSKLSKLCP
FT                 YLDKDGVLRARGRIDNAAQVDAAMRRPVILDARHPYTRLLIAHFHRQCGHH
FT                 GTEKILNEIRQQFYVVHLRPAVKNAQQSCQACKNFKAKPSPPEMGQLPAAR
FT                 LDSHVIPFHRTGLDYFGPIEVIVKRSREKRYGALFTCLVTRAVHLELAHSL
FT                 STDSCILAIRRFVGRRGCPAHLYSDNGTNFRGADNELKTALQEINQQQIEN
FT                 ECATRGITWHWNPPSAPHFGGSWERLVRSVKTALGKVLLQKNLKDESLYTF
FT                 LVEAEHVVNSHPLTHVSIDPDDPEALTPNHFLLGRSSNLQPAGEFSPTDLT
FT                 SHHQWRATQELANQFWRRWVHEYLPTLLRREKWDRPTTPIQEGDVVVEVNE
FT                 SLDRNQWPLGMVVKTFPGNDGILRVVDIRMSNGKQYRRPVAKLCVLDVRAK
FT                 TAKPDAQLDSTN"
XX
SQ   Sequence 6541 BP; 1682 A; 2046 C; 1573 G; 1234 T; 6 other;
     tgatggtctc gctccctgaa tcgtcccagc cctaaaagtg caagtggaga gagtgagacg        60
     agggggagga cccgccgcca gccaataagg gtccaatctg gagtcgacgc tccaggaccg       120
     ccgccattgg gtccatcgcc gccacatagg aatcgtcgtc acacttgttg acaccgtatt       180
     ttaagggttt gaacccgccc ctgaaggggt tcatcttccg ggaagtggcg tccaatttcc       240
     cccccaagag gacaaaattt taattttttt cctttgttgg gtctattggt ccctacagga       300
     tgtcggaaca cgacccgtga ggagcacagc aggactgctg ccacgccgat actggatgac       360
     gacgccccca aggtcaacgt caccacgtcg ccagcggtgg attcgccagc gtcgatcgcg       420
     acagggagcg ggtcgcggaa gagcgcccac accatccgaa gccaaagaag atcgacgtgg       480
     agacccgcgc cgcactcgtc gacgtggagg aggcgcagct tgcgcgaaga agggacctcg       540
     cgctcatgga gtcccaacaa cagtcccttc tccgcaagat caagcgcctc atggaccaat       600
     gtgcagatcc cgacctctcc ccagaagaga gtataacact taacgaccag cgcaagggtc       660
     tcgaaaagga ccttgaagag tcaatcgagg atatcgaacg ggcaaaagtc gtcattaagt       720
     ttgaagcgga gtcagcagag ctgcagaaaa agaaaatcct gatccaagcc gactccgaat       780
     tgaacaagtt ggacatcgat tcagatgtgg aagaggtcga acgagagtca gaaccagtcg       840
     acaaaacgga tctgactctc aagtgggcgg aacaacaaca aataccacca gccaagtcac       900
     gtcccctttt ctatcccaas aatgcaagca cktctctcca tcatcgtccc cagtcacgac       960
     agtcacgtcc actattgtcc ccgccgttgc cccatttact gcacagtcaa tgtcgtcgtc      1020
     ctcccccacg acaacaacga ctgccgcmat gtcgaacccc ctcttcgcga catttgccat      1080
     gcccttctcc tcatctcccg attattgggc atctctgacg tcgtcgccgt ccgtgtccac      1140
     gccgcacacg ttttttggtg caactccgcc ccccgtgtcc acgccccaga actactggac      1200
     cgckcctcag tccacgccgt acacgttctc agctccgccg cccccgaata gcccaaccgt      1260
     cacgccmgtg tccacgcgac acgcgttctc caacgcgact ccgccgcccc caagtaatcc      1320
     aatcatcacg tccgtgccca cgccgcacac gttctctgct gcacctccgc cgcccccaaa      1380
     tattccgatc gtcaccaccg ctcatcatac gaccacgccg mtcgtatctg ctgccacggg      1440
     gagcacaatc cctccccctc aagcaaccta ttactggact gcgccccagt ccacgccgac      1500
     catgccgcct tacacgattg cagcaccacc gcccccaccg ctgcagaatc ccttggtcaa      1560
     cccgccaatt agctcgtccg ccgacaagat tttggcacga caagtccaag ggcgagacct      1620
     accaactttc actggtcgac cggaagagtg gccagctttc ttcgtggcct tcctcaccag      1680
     tacgaatttc tgccagtttt cccatgccga gaacctggtc cgcctacaac gctgcctcaa      1740
     gggagaggcc ctcaagatgg tgcaatgcct gctggtgtcc cccgacagcg tcccaatagt      1800
     catccagaag ttgaagatga ggtttggtcg gcccgaccaa ataatcgaaa atttgatcgg      1860
     aaaggtccag ggtctccccc cagtcaagat ggaaaagatg gacacgctca tcgacctggg      1920
     catcgccgtc gataacctcg ccgccaccat caaagccctc aactgcacgc agcacttgtg      1980
     caaccccatg ctcatcaaag agcttgtgaa gaagcttccg agcaccagcc agctcgagtg      2040
     ggctcgtcac atgcagcttt ccggtcaccc gttgccgacc gtcgacttct tcgcagagtg      2100
     gctcacaagc tactctgacg ccgcctgcgt cctctgtccc cccacaataa gccacgaagt      2160
     caaccaccac gagcgaaaaa gaagaaatcc ccacgaccga gtcatggtgg cggaagaaga      2220
     gaagaagaaa acacgaggcg accatcgaga taatcgtcct cgtcaaacaa agccccccga      2280
     aaaatgcccc tgttgcaaaa gcaacaatca caagctgcac gcgtgcaggg atttcgccga      2340
     caaaccgaca gacgagaggt gggagctcgt taaaaacaac cacctctgct tccggtgtat      2400
     ggcatctggc catggggcca gagattgcaa atttccccga tcttgtggcg tcgacgggtg      2460
     tgaaaaaccc caccacaaga tgctccatat cgctgcccca cgaagaagac aagccgacga      2520
     acccgagaat cctcgtcgcc ctgctgctgt accacccgaa atggtgaaca cgggggaaga      2580
     agtcccctac atcaatctga tggtccttcc cgtgacgttg gagggtccca gggggtcaat      2640
     ctccaccttc atgatgctcg attgcggcag taccctcacc gtcattgaga gtaccatcgc      2700
     cgaagccatt ggattaaggg gagagtcccg tcaaatcaag gtgggcggat tccaaaccga      2760
     ccccaccgta ctcaacacca aagtcgtctc cctccgcatc aagtccaagg acggcagctt      2820
     cgtccacgac ctgaagaatg tcaagacggt tgacaaattg aagctgcggg agcagtccgt      2880
     ccggaagtca ctgctcaaga agtggcctca cctccaggga atcgacctgg acacctacga      2940
     ttgcaagcgt ccagggattc tcgtggggat ggacaacccc accctcttcc tacaaaaaga      3000
     ttgccgagta ggaaagggaa gcaacagcaa ttcccccatc gccatccgca cgccgctggg      3060
     atgggcgtta atggggagaa cagcgtgggc cggccgggaa caatatgcat atcacatgca      3120
     agaagtcgac cccctccacc aactcgtgaa agaccagttt tccaccgagt catttggagt      3180
     caagccgttg gtggagaagc caagaacgaa ggaggacaag cgagctcagg aaattttgga      3240
     cgcatccact cgccgagttg aaggaggatg ggaaaccgcg ctgttgtggc gtgatgatca      3300
     tgtccaactc cccgagagct actccaacgc gtatcgtcgc ctcatgtcca tggagaggaa      3360
     gatggaccgc gacccagaat ttttgaagag ttactgcacc aagattgatg agtatctgag      3420
     caaaggatac gcgagaattt tgtccccaga agaagccgcc accactacca gcaagaccaa      3480
     ctacattccc cattttatgg cgtacaatcc caagaaacca gggaagttac gcttcgtctt      3540
     tgacgccgcc gccaagaatc atggtcgcag tctcaacgac catctcctcc aaggaccaga      3600
     caagctaatt ccactgccca acattctcct caaattcaga caacgacaaa ttgccctcac      3660
     cgccgatatt gaggacatgt ttcaccgcgt caaagtgaaa caagacgatg cccaagccca      3720
     acgcttccta tggagaggaa gtgaccgccc ccgtcccccc gataccctcg aaatgggagt      3780
     gctcatcttt ggagccacat gctcccccac ttgtgcccag gaggcgaaga acaagaacgc      3840
     tgcagagttt caacagcaat ttcccgacgc cgtagatgcc atcatcaacc gccactacgt      3900
     tgatgacctg ctcgactctt gtgacaccgt ggagcaggcc aagaagagat tcgaagaggt      3960
     ccgaaccatc cacgccgccg gtggatttaa cctccgcaat tggctgtcca attcccccga      4020
     agttgttgcc cacatccccg aggaacttcg tgccagcaac atgaaagatc tgcaaatggg      4080
     cgaagacaac gtcatcgaga gagtccttgg tcttttctgg agaccagaat ccgacgtctt      4140
     cactttctcc ctcaacttcg tcaaagccag agaggagatc ctgtctggga agaaagtccc      4200
     caccaagcgt gaaatgctgt cactggtcat gtccatctat gacccattgg gattcctcgc      4260
     catcctcacc atcaaagcaa aaatcctact acagcaagca tggcgcagcg aggtcgggtg      4320
     ggatgatgaa atcccccgat ccacattcga atcatggaga atttggctac aagaagtgca      4380
     gaaaattccc acattccgac tcccccgatg ctactcgttg accttcacgt ctgcagacga      4440
     ggtccaactc cacatctttg tcgacgcgag tgaagaggca ttcggagcag taggctactt      4500
     ccgcatccag aaagaagaga aggtggaaat cgccctcgtc atgggaaaag ccaaggtcgc      4560
     ccccctcaaa agcctgtcca ttccccgcat ggagctgcaa gcagcgttga tgggagtcag      4620
     actcgcccac actatctgtc aacaacacga ggtgaaaatt gacagaacaa ttttctggtc      4680
     cgacaacacc accgtcttgg gatggatcag atcggacgga agaaaatacg tccaattcgt      4740
     cgccaaccga gtgggagaga ttcaggaact ctccactcca gaacaatgga ggtgggtccc      4800
     cactttggag aatgtcgccg acgagttgac ccgacttgag tctccatgcg atttccagcc      4860
     ctcaagtcgt tgggtgaatg gtcccccctt cctcaaacaa tccgaagaaa actggcctgt      4920
     ccccacctgc acgaaaataa aagaaagccc ggaagaggaa atgaagaccc actgcgtcct      4980
     ccatttccac gaaactgccc ccctcatcga catcagtcgc ttctcattgt ggagacgcct      5040
     gatcaatacc accgcgtatg tgtttcgagt ccgtgacatc acgatgaaga aatctcctct      5100
     ctacagcaaa gaactttgtc cagaagagtt ggtccgcgcc cagcagtggt ggtggagaac      5160
     gagccaacaa gaaagtttcc cgaacgagtg ggagtgcctg tctgccgagc tgcccctccc      5220
     caagaagagt aaattgtcca aactttgccc ctatttggac aaagacggag tgctgcgagc      5280
     ccgcggtcga atcgataacg ccgcccaagt tgatgcagca atgagaagac cggtcatttt      5340
     ggacgcccga cacccgtaca cacgtctcct cattgcccac tttcatcgcc agtgtggaca      5400
     ccacggtaca gagaaaatcc tgaatgagat tcgccaacaa ttttatgtcg ttcacctccg      5460
     ccccgcagtc aagaacgccc agcagtcctg tcaagcctgc aaaaatttta aagccaagcc      5520
     gtcccctcct gagatgggac aattgccagc cgccagattg gatagtcacg tcatcccctt      5580
     ccaccgcacc ggactcgact acttcggccc catcgaggtt attgtgaaga ggagtcgcga      5640
     aaagagatac ggcgccctct tcacatgcct cgtgacccgc gccgtgcatc tcgaactagc      5700
     ccacagcttg agcacggact cttgtatctt ggcgatacga agattcgtcg gaagaagagg      5760
     atgtccagcc cacctctact ccgacaacgg taccaacttc cgaggtgccg acaacgagtt      5820
     gaaaacggcc ctgcaagaaa taaatcaaca acaaattgag aacgagtgcg ccacgagagg      5880
     aatcacttgg cactggaatc ccccctcagc accacacttt ggcggaagtt gggaacgcct      5940
     cgtccgctcc gtcaagaccg cattgggaaa ggtcctcctg cagaagaatc tgaaggatga      6000
     gtccctctac accttcctcg tcgaggctga acacgtggtc aacagccacc ccctcactca      6060
     cgtatcaatt gatcctgatg acccagaagc ccttacaccg aaccatttcc tcctcgggcg      6120
     ctccagcaac ctgcaacccg ctggggagtt cagccccaca gatctcacaa gccaccacca      6180
     gtggcgagcc actcaagaat tggctaatca attttggagg aggtgggttc atgaatatct      6240
     ccccaccctc ctccgccgtg aaaaatggga ccgcccaacc actcccatcc aagaaggaga      6300
     cgtcgtcgtc gaggtcaacg agtccctcga ccgaaatcaa tggccactgg ggatggtggt      6360
     gaagactttc cccggaaatg atggaattct ccgcgtcgtc gacatccgga tgtccaacgg      6420
     gaagcagtat cgccgcccag tcgcaaaact ctgcgtcctc gacgtgcggg ccaagaccgc      6480
     gaagcccgac gcccagctcg actccaccaa ttgaatgcga cactcgcatt ggggaggagt      6540
     a                                                                      6541
//
ID   BEL-7_FoCa-LTR repbase;    DNA;    INV; 607 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-607
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2598-2598 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 607 BP; 181 A; 120 C; 108 G; 198 T; 0 other;
     tgtcgtcgag atttacataa ttattttaaa tgatatttga catgataatg aaaaaaaatc        60
     tgaatgtatt tgctgtgata tgaaaatgac tttggtggat gtatgtatgt acctttgaga       120
     cagagaccag tttggtaaat ttgaatggtg ccattctgtc gtctcttttt cctggaactt       180
     gtccagtttt taatcttttt ctttaaagtt ttttgaacct ttcgtgacct cctcaacccc       240
     acctccaata attgtgtggc catcagccat tggctggtga ggttgaggag accttccctt       300
     tgccagaagt tggcttcggt tttggcagtg aatatgccct ttttaagtga agttcaagtt       360
     gaaataattt tagtgtctct ccagctacga gaacaataac acgtattttg cccctcgtct       420
     ctcttaacac tctaaaattg taagtaaatg agaaattgtg tgacgaataa ataaaactac       480
     caacaaagta actaattgtg acaacgccgc cgcttattta cacagtttta cggtcacacc       540
     acgccatcga gttacacaat aagtcacaca aacataaaaa acatacagtc ctccaatttc       600
     cgagaca                                                                 607
//
ID   BEL-7_LH-I  repbase;    DNA;    INV; 5409 BP.
XX
AC   ADOQ01012153;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_LH_;
KW   BEL-7_LH-LTR; BEL-7_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5409
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012153; Positions    6638    1230.
XX
CC   Positions [4430-4933] - Integrase core
CC   'GATAA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1415
FT                 /product="BEL-7_LH-I_1p"
FT                 /translation="MAERIKILTQKRSSLKTQITTLSNALDRGKLDNATLK
FT                 LRIARVTELYHKFEENNDELMVLDPDDGHMAELFNTQERFYDLAGRIERIV
FT                 NVAGTAGTNSNASSEEVRDDNSVNGTGNTRRRIKLPQASLPIFDGKYENWL
FT                 SFKNAFNNMVGSQSDLSDMDKLHYLQSALKGDAASKIKILAVEGINYSSAW
FT                 KLLERSYEVKRILISRHLASIINSPVLDKETTSGLTKLADDAQQHIASLNS
FT                 LGITVGEEMVVHILESKLPKSALEKWETTLDRDEFPKLEKMFEFLYKIAVC
FT                 ASRREKSKASESDKLKGEPPFKKRREDSSNRAFISNVARNCIVCKTGRHFI
FT                 YTCDKFKKLSVPERIELIKNAKLCFNCLRSHRGTPCKFSNCTICQKRHNSL
FT                 LHLDKPTGTPNASSSADSSS"
FT   CDS           2199..4472
FT                 /product="BEL-7_LH-I_2p"
FT                 /translation="MAIRRLSSLERKFDADEILKNEYIRVIEEHLRLGHMA
FT                 VVRDSENDGYYMPHHAVIKETSNTKVVRVVFDASAKTSNGISLNEALMVGP
FT                 TIQNKLFTHLMRFRTYNYVITADVEKMYCQVLLHEDDRWFQRILWRVGKRV
FT                 ETLQFNTLTFGVASSPFLAIRVIQKLADDESHMYPRAAKIIKAHLYVDDLL
FT                 TGAATVEETRVIRNEIIALLARGGFNIRQWASNDERIVNDLPEEALHANFV
FT                 MNLDRSLKTLGVTWNARDDKIQYFVHPIKNTEKITKRSILAEIAKIFDPLG
FT                 LLGPIVLHAKRMMQDVWRCELHWDESVPQSINSEWLEFTRQLKSMGQISFD
FT                 RKLLVEDCRDIQYHGFCDASNVGYGACLYVRSTDKFGKTIIRLACAKSRIA
FT                 PLKTVTIPRLELCGALLLARLYREADAAMSIEPNKVVFWCDSTIVLHWLRT
FT                 APHLLKTYVANRVVEIQESVESNVWRHVGSADNPADAISRGQLPRTFLQNQ
FT                 IWFQGPSWLRKEETEWPNEIMQIDTVPELKRNTCLLVTSKEFGMLDRYSSY
FT                 SKLLRVMAYCLRWRSSNKRTGLLNAREIDTAEIRVLKLLQATQFTHEIRKL
FT                 QQREELKNKSKIVNLSPFLDKNGLIKVGGCLRKSLLTFAQKHPILLSSRHP
FT                 LTDRIIKEIHEMHHHTSIQNTLYILRQRFWITDGRNQVRRIVRACTRCFRF
FT                 HASATEYKMGDLPSFRVREALPFANTGVDFCGPFFVKEKKHRNRARVKAYV
FT                 CGLYFCL"
XX
SQ   Sequence 5409 BP; 1680 A; 1071 C; 1262 G; 1396 T; 0 other;
     ttttttggtg cctcctgtga ggtacgagcc tcacataaat acacaaccga agggaagacg        60
     gcttcgtgca gaagggatca tacgaaggca gaaataacgc acggcattca tcacagggaa       120
     ttcagagtga gtcattcgat ttacattctc cacgtaattc agagcgcgta acaatggccg       180
     aaagaattaa aattttgact caaaaacgaa gttcgttaaa aactcaaatc actactctat       240
     ctaatgctct cgaccgaggt aagctcgata atgcgacatt aaaattacga attgctcgcg       300
     taacggaatt ataccataaa tttgaagaaa ataacgatga acttatggta ttagaccctg       360
     acgatgggca tatggcggaa ttgtttaata cacaagagcg cttttatgat cttgctggtc       420
     ggatagaaag aatcgtcaac gtggccggca ccgcaggcac gaatagcaac gcgtcgagtg       480
     aagaggttcg cgatgataat tctgtcaacg gaacaggtaa tacgcgccgt cggataaagt       540
     tgccacaggc atcgttgcct atattcgacg gcaaatacga aaactggctt tcttttaaga       600
     atgcttttaa taatatggta ggctcgcagt cggatttgtc tgatatggac aaactgcatt       660
     atttgcaatc agcactgaag ggcgatgccg caagtaagat aaagattctt gcggtggaag       720
     gaattaatta ctcgagcgcg tggaaattat tagaaagatc gtacgaggtc aaacgaattt       780
     tgatatcgcg gcatcttgcg tccattatta attcgcctgt attagataag gaaactacga       840
     gcggcttgac gaaactggct gatgatgcgc agcagcatat cgcatcgtta aattctctgg       900
     ggatcacggt cggtgaagag atggtggtgc acattttaga aagtaaattg ccgaagagtg       960
     cgctcgaaaa atgggaaacg acgttggata gggacgaatt tccaaaactc gaaaaaatgt      1020
     ttgagttcct ttataagatc gcggtctgcg cgtcgagacg cgagaaatca aaggcatcgg      1080
     aatcagacaa acttaagggc gaacccccgt ttaagaaacg acgagaagac tcgtccaatc      1140
     gagctttcat atcaaatgta gcgcgtaatt gcatagtttg caaaacagga cgacatttta      1200
     tttatacttg cgacaaattt aagaagttat ctgttccgga acgcattgaa ctaataaaga      1260
     acgctaaact ttgctttaat tgtctacgtt cgcatcgcgg aactccctgt aaattcagta      1320
     attgtacgat ttgtcagaaa cgacacaatt ctttattaca tcttgataaa ccaaccggca      1380
     caccgaatgc ttcgagttcc gcggattctt caagttgact agatgacgca gccgagaata      1440
     aagcaacgag tctcgcgaca atctcgcatt ttgcaccaca gctgctaacg agtgcgttag      1500
     ttaatattcg ggactgtaag caaaacgttg tgcaatgtcg agtgttgtta gatacgtgcg      1560
     ctacagcgaa cttcatctcc gagtcaatcg tgaaacaatt aaacgtgcag gtagttaaac      1620
     aatcactacc gataggagcg attaatgcaa tgaatacgat gtccaagggc atggtacaag      1680
     ttactataca ttcgcggcat aatgattttt ctaaaacatt aacgtgttta ataattccaa      1740
     gcatcacaga tcgaattccg gcagacgtct ttccgcgaga gcaagttaga atacctccaa      1800
     acattaagct agctgatccg tatttccata taccaaactc aatcgatctt ttgataggat      1860
     caggcgcgac gttgtcatta ttttcaattg gacaaatcaa tctgtctcga gatggacatg      1920
     attagttttt acaaaaaacg cggcttggat gggtgattgt gggaagcgca ttagcgcaaa      1980
     ctcaatgtaa taccgcgacg tgtcaattga cgagtttaga aaaacaatta ttgaaatttt      2040
     gggaaattga agaggttgcc accgataagc caaagtcaga ggaagaaata gaatgtgaaa      2100
     ggcatttcgt gaacaatgtg tttcgcaaca agaagggacg ttatacggtt cgcctaccgt      2160
     ttcgcaagaa cgccgggact ttgggggaat ctagaacaat ggcaattaga cgcctatcat      2220
     cattagaacg caaatttgac gccgatgaaa tattgaaaaa cgaatatata cgagtgatag      2280
     aagaacattt aagattaggg cacatggcag tagtaaggga ttctgaaaat gacggatatt      2340
     acatgccgca tcacgcggtc attaaagaaa caagcaatac taaggtggtg cgcgtggtat      2400
     tcgacgcctc cgcgaagacg agcaacggca tatcgttgaa cgaagcgttg atggtagggc      2460
     ctacaattca aaacaaactg ttcactcatt taatgcggtt tcgaacatac aattacgtta      2520
     taacagcaga cgttgaaaaa atgtactgtc aggtgttgct tcacgaagat gatcgttggt      2580
     ttcaacgaat actttggcga gtcggcaaaa gagtcgaaac acttcaattc aatacactca      2640
     cgtttggcgt ggcgtcgtca ccgtttctag caattcgcgt gattcaaaaa cttgcggacg      2700
     acgaaagtca tatgtatccc cgggcggcaa aaattatcaa ggcacattta tatgtggatg      2760
     atttattaac cggggccgca accgtcgaag aaactcgagt cattagaaat gagataattg      2820
     ctctgttagc tcgcggaggg tttaatatta gacaatgggc gtcaaatgat gagcgaatcg      2880
     ttaatgatct gccggaagaa gcgttgcatg ccaatttcgt aatgaaccta gatcgttctt      2940
     tgaagacgtt aggagttacg tggaacgcgc gcgatgataa gatacaatat tttgttcatc      3000
     ccataaaaaa cacggaaaaa ataacgaagc gaagcatttt ggcggagatc gcaaaaattt      3060
     tcgacccatt aggattgctg ggccccattg ttttacatgc taaaagaatg atgcaggacg      3120
     tttggcgatg cgaactacat tgggacgaat ccgtacctca aagcattaac tccgagtggt      3180
     tagaattcac gcggcagctg aaatcgatgg gacagatttc ctttgatcgc aaattattag      3240
     tggaagactg tcgcgatatt cagtatcacg gtttttgcga cgctagcaat gtcggctacg      3300
     gagcgtgtct ttatgtgcgg tcaacggaca aattcgggaa gacgataatc cgactcgcat      3360
     gcgccaagtc gcgaatcgcg ccgttaaaaa cagtgacgat accgcgactt gaactttgcg      3420
     gcgcgttgtt gctagcgcga ttatatcgcg aagcagatgc tgcaatgagt atcgagccca      3480
     acaaagtagt cttttggtgt gattcaacca tagttctaca ttggttaaga actgcaccgc      3540
     atttgctaaa aacatatgtg gcaaatcgcg tagtcgaaat tcaagaaagt gttgaatcta      3600
     atgtatggcg tcacgtagga tcggccgata atccagccga tgcgatatcg agaggtcagc      3660
     tacctcgcac atttttacag aatcaaatat ggttccaagg accatcgtgg ttacgtaagg      3720
     aggaaacaga atggccaaac gaaatcatgc aaatagatac ggtgccggaa ctgaaaagaa      3780
     acacatgctt gttagtaaca tccaaagaat tcggcatgct tgatagatac tcgtcttatt      3840
     ctaaattatt gagagtcatg gcctattgtt tacgatggcg atcgtctaac aagcgtaccg      3900
     gattgctaaa cgcgagagag atagacacag cggaaattag agtattaaaa ttattgcaag      3960
     ctactcaatt tactcatgaa atacgaaaac ttcaacaaag agaggaatta aaaaataaga      4020
     gtaagatcgt taatttgagt ccatttcttg ataaaaacgg tttgataaag gtaggaggtt      4080
     gtctgcgaaa atctttgtta acattcgcgc aaaaacaccc gattttacta tcaagtcggc      4140
     atcctctaac tgatcgtata atcaaagaaa tacacgagat gcatcatcat acaagtattc      4200
     agaatacttt atacatatta cggcagagat tttggataac tgatggccgg aatcaggtac      4260
     gaaggattgt gcgtgcgtgt acgcgttgtt tccggtttca cgctagcgcg acagaatata      4320
     aaatgggaga ccttccgtcg tttcgcgtac gcgaagcact gcccttcgct aataccggtg      4380
     ttgatttttg cggcccgttt tttgtgaagg aaaagaagca tcgtaataga gcgcgtgtga      4440
     aggcgtacgt atgcggtttg tatttttgtc tataaaggcg gtgcatcttg agcttgtaag      4500
     cgatttatcg acagatggat ttctagcggc attacgtcga ttcgtcgcaa gacgagggtt      4560
     accggaccac atttattcag acaatggaac caatttcgtc ggggcaaata atcagcttaa      4620
     agaaatgtat gctctattca attccgaaca acataaagat aaaataaatc atttttctag      4680
     cgagcgtaga atcgactggc acttcatacc gccgtttgcc ccccattttg gcgggttgtg      4740
     ggaagccact gtcaagttgt ttaagcatca tttcaaacgc gtcgtaggag attcactctt      4800
     cacgtttgaa gaactagcta cgtttgttac tgaggtcgag agcatcttaa attcgaggcc      4860
     aattatttct cttacgtcgg atccgaatga ctcgctcgcg ctatcgccgg cccattatct      4920
     tatcggcaaa ccactaacaa cccttccgga gggcgacatc acttgtgttc cagccaacag      4980
     actatcaagc tggcaacata tcgttaaagt ccgtcaagat ttctggacac gatggaactt      5040
     ggagtatctc aacgagctac agatgcgtag caaatgggcc aaggacggaa tgagtctgga      5100
     agtcggaacg gttgttctga taaagtctaa aggcataccc tgttcacaat gggctctagg      5160
     caaaatattg gaactgcatc caggcgaaga cggtgtgtct cgagtggcta cgattaagac      5220
     agcaaccgga ataataaaga gggccacaag gctcctctgt aagctaccaa cggaataata      5280
     caagatctgt tggcgatgtt caatcattga acattttata tatataacaa ttaatgcgaa      5340
     atgtatgcaa ctgactagtc agggctctat ataaagagtt gatcgaatac tctctcaacg      5400
     gggggagta                                                              5409
//
ID   BEL-7_LH-LTR repbase;    DNA;    INV; 729 BP.
XX
AC   ADOQ01012153;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_LH_;
KW   BEL-7_LH-I; BEL-7_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-729
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012153; Positions    1229     501.
XX
SQ   Sequence 729 BP; 204 A; 150 C; 161 G; 214 T; 0 other;
     tgttatgtaa gcgctatata atgtcatgca tgacagatgg tttgaccgac aaacgaatat        60
     atattctcat aaatacgttt ccgataccgg cttgtaaacc tcttaatata aatatgtttt       120
     catagcggcg tctttgatat gccgcgtttt ttgtttaccg cgctaggacc gccgtgacgc       180
     tatccgccat tgccttgagc cgccgcgttt gttttgtggt ggccaccact tttcatatgc       240
     gacatcgacg aatcacggca tcttagactg ataaccacca attagataaa atttgaggag       300
     gtcctaagat ctcttggtgg cggcgcgcat cgttccgttc tcaatattcg cgtagtagct       360
     ctcgaagtga acagtcggtc atatacgagt acgaaaatta tacgaatacg agtcttatac       420
     gagtacgtta caagtccggt ggaaacggtc gatttaacgg gttggtctaa ccgaggactc       480
     agggtgagtt taggctcatc cctaggcgtt gtccttacaa cattattcga tataatcggg       540
     gactcagggt aacttcaggt taacccctag gcgttgtcct cgcaataata cagttaagga       600
     gaagtgattg caaatgtaca ataagtgata caaataaact cactgtgaat aagcaatttt       660
     gttcattgtt tgtgccttat ataaaataaa aacagtgcgg acattaaatt gtccaagctg       720
     atcggaaca                                                               729
//
ID   BEL-7_MoPha-I repbase;    DNA;    INV; 6217 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1134-1134 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           898..2199
FT                 /product="BEL-7_MoPha-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MNRVKQINQSRTALKIQLTTIENLIAEDRVSKVNLRL
FT                 RLKRATDLFHAYEEAHNELELLKPDEYSNELIEIQNRYYAIATHCEEEAPA
FT                 ATSAVNLNATSIPVDNNTRRLKLPVAELPKFDGSLEKWLTFKNTFNTMIDA
FT                 REDITDLQKFIYLRDSLQDEALKKISIFSVSEKGYRDAWNLLDKSYNKKRI
FT                 LRARHLDAILALMPSARKDDSRRPSDTASSSETTAKELMKLVDDMRQHMNM
FT                 LESLDVTLDPYLPVRIMERALPSSIVTEWERTLNFEDSPKFDQICEFITGE
FT                 AFRMAARETSPSSSNVEPNNKRSHSKKEPAAVKIRKNDSGARAFVTNASTK
FT                 CPACKKDDHPLYRCSEFTRLSIQRRWDLIRRSNICRNCLRKHPGDCQRVNC
FT                 KFCKKPHNSLLHNHAYKSNTRSSETTPSESRTLATAAKSE"
FT   CDS           2203..6051
FT                 /product="BEL-7_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="LRSMTSNAITCNPLSQLMMSAVVRVKGTRGHFIRCRA
FT                 LLDTCATAHFVTESLVRTLRLPIRPCAISIGAINDLNTVSSGSVEISFRSW
FT                 HNEFSKTLSFLVVPKIADNIPSSTFPRKVIHIPTNIKLADPQFHLPRPVDM
FT                 IIGSGATLSLLSIGQINLSRDNGDLLLQKTQLGWVVVGGLTSNDGRIVASC
FT                 QLTKLHEQIAKFWLIEDTTSERPKISDASECEQHFIQNTTRDESGRYVVRL
FT                 PFRHKEYDFGNSRSIALRRFHGLQKRLEANPILKQEYTRVLDEYVSLGHMS
FT                 LIPNDSGNGYYLPHHAVVKTTSATTKVRVVFDASAKTDRGASLNSFLMVGP
FT                 TVQDKLFEHLSRFRTHRYVITADIEKMYRQIWIHPDDRQYQKIFWIHNNKI
FT                 TTFQLNTVTFGISSAPFLAIRSIQQLAIDERETFPVAAEILRRDLYVDDLL
FT                 TGANDLEMLKRIRDEIISILRRGGFNIRQWASNHPQALEGLNERTIDVEFL
FT                 TKEDPILKTLGISWNARRDEFLYNVKHIKPISRVSKRHILSEIAKIFDPLG
FT                 LLGPIILASKMLMQECWKAQISWDESVPTVLHSSWLSFTEQLNMIDGLTIP
FT                 RQLIINNPKSVQVHGFCDASKIGYGACLYVRSCDEQGNTLVRLWCSKTRVA
FT                 PLKETTIPRLELCGALTLARLFKEVSNSWNSCPNKITFWCDSMIVLHWLKK
FT                 APATLKVFEANRVGEIQKITDGLEWRHIKSEHNPADALSRSQFPREFLKNE
FT                 SWFDGPAWLSRPEENWPESIEIPIKDLPGLKKAVCLLSSKLETRYIYDGFS
FT                 SYTRLTRAIAYGLRMLPSNRNKGALTIQEVCEAEVRILKLIQNEQFANEIT
FT                 RISNSQDVKGSKLASLSPILDQSGLLRVGGRLRNAAIPISQKHPILLPSHH
FT                 HVTDLIIKNVHEKNYHAGIQTTLYAVRYRFWLLDGKNQIRKIVRQCVRCIR
FT                 FRASPVEYKMADLPKSRLNESIAFNHTGLDFFGPMFVKEKKQRNRGRVKVY
FT                 GCVFICMSSKAVHIEIVSDLSTEAFLAALKRFMGRRAIPAHIYSDNGTNFI
FT                 GANNQLREWYALYESAEFKTQINEFATTNKISWHFNPPLSPHFGGIWEAAV
FT                 KSFKHHFKRVIGDRLFTYEELNTLAIEIEAILNSRPLCPISTDPNDPLALT
FT                 PAHLLVGRPLTMLPENNYLYVPENRLTSWRLISKARQDFWRKWHVEYLTEL
FT                 QRRQKWTKSNTELKRDSIVIIIDKNLPCMRWQLGRIVELHPGDDGLVRVAS
FT                 VKTSQGIFKRNTKLLCPLTTDS"
XX
SQ   Sequence 6217 BP; 1883 A; 1465 C; 1368 G; 1501 T; 0 other;
     gtttttggtg cctcctgtga ggtatgaatt tacactccgc gagtgttgtg cattaagaaa        60
     aatcgacgca gcggagagcc gtcgatcaac cgaaatttcg acgcagcgga gagccgtcga       120
     gcaacgaaaa gatcgacgcg gcggagagcc gtcgatcgac cagcagccac ctcagtcgtc       180
     tccagtgcca caccgcccag ctccacgccg acaacgagga tctactgcat ccaatataag       240
     tatccgccaa tatattatca cactaacata cgtaaaacac cacatttaaa cggtaaattc       300
     atcaatttgc gtgccgttac attctcccac ctacatatgc tgaatcggat ttccttaagt       360
     attaatctcg aaatcgtgcc gagaaatagt gataaataac atgccatttt tcacctaatt       420
     cgcgggaagg aaagttttca cgaagggtgc cttgcaacga gaggagggaa ataggaagca       480
     ggtagaaaca cgttcgaaac gcgacgtcac caattgtcgc gacggaaatt tccgcacatt       540
     gagggagagt caaacttgtt ttcttaggct cgataccttg cattgtctat ccactcgatt       600
     accgtgcaga tccgaatttg catttctttt ctttttcgga gaaaataaga atacgatcga       660
     cgtaccctct gagacatctg gtcgtcataa attatcttcc cggcgacagt ctgcctcaac       720
     aaaaaaaagg gtcagacaga cactcgacga tttgcccggt cgcccctttg tcacgcgctt       780
     tccccttata aaaataagga ggaatttttg cggtgttacc tttctctctc ttcttgcggg       840
     ctattgttgc atttcgagtg aattccgatc aagttattaa cacgacgcct gttcaacatg       900
     aatcgcgtaa aacaaataaa tcagagtcga accgcgctga agatccaatt gaccactatc       960
     gaaaatttga tcgcggaaga tagagttagt aaagtcaatt taagactgcg gctgaagcgt      1020
     gctacggacc tctttcacgc ttatgaggag gcccataatg agctcgaatt attgaaaccg      1080
     gacgaatact cgaatgaatt aatagaaatt caaaatcgat attacgcgat tgcaacgcat      1140
     tgcgaggagg aagcgccggc ggcaacatcg gcggtaaact taaacgcgac ttcgattccg      1200
     gtcgacaata acacgcgtag acttaagtta ccagtcgcgg agctacctaa attcgacggc      1260
     agtctggaaa aatggttaac attcaaaaac acttttaaca caatgatcga cgcacgcgaa      1320
     gatattaccg atttgcaaaa atttatatat ttgagagatt cgttacaaga cgaggcactg      1380
     aagaaaatct cgattttcag cgtgagcgaa aaaggttacc gggacgcatg gaatttgctc      1440
     gacaaatcat ataacaaaaa acgaattttg agagcgagac atctcgatgc cattctcgcg      1500
     ttgatgccga gtgcgcgcaa ggacgactcg cgtcggccgt cggatacggc gtcatcgagc      1560
     gagaccaccg ctaaagaatt aatgaaatta gtagacgata tgcgacaaca tatgaatatg      1620
     ctcgagtcat tagacgtaac tcttgatcca tatcttccgg ttcgcataat ggaacgcgca      1680
     ttaccgtcca gtattgtcac ggaatgggaa agaaccctca atttcgaaga ttcacccaaa      1740
     tttgatcaaa tatgcgagtt cataacggga gaagcgtttc gaatggccgc gcgagaaacg      1800
     agcccatcct catcaaatgt cgaaccgaac aataaaagat cgcattccaa gaaagaaccg      1860
     gctgcggtta agatacgcaa aaacgattcc ggcgcgcgcg ctttcgtcac caacgcgtcc      1920
     accaaatgtc cggcgtgcaa aaaggacgat cacccgttgt atcgatgttc cgaattcaca      1980
     aggttatcaa ttcagcgtag gtgggatttg ataaggcgca gcaacatttg cagaaattgt      2040
     ttacgcaaac atcccggcga ctgccaacga gtaaactgca aattctgcaa aaaaccacat      2100
     aattcattgt tacataacca cgcatataag tcaaacacga ggtcttccga aacaacgccg      2160
     tcggaatctc gaacgctagc aactgcggct aagtcggaat gactaaggtc aatgacctcg      2220
     aacgcgatca cttgcaaccc cctctctcaa ttaatgatga gcgctgtcgt tcgcgttaag      2280
     gggactcgtg gtcatttcat tcgatgtcgc gcattattag acacgtgcgc gacggcccac      2340
     tttgtaacgg agagcctcgt tcggaccctg cgactcccta tacgaccgtg cgccatttcg      2400
     atcggggcaa ttaatgattt aaatacagtt tcgagcgggt cggtcgaaat ttcattccgt      2460
     tcgtggcata acgaatttag taagacactt tcttttttgg tagtaccgaa aatcgccgac      2520
     aacataccga gcagtacgtt tccgcgcaaa gtaatccata tacccacaaa tattaaatta      2580
     gccgacccgc agtttcacct accacgacca gtagatatga taataggatc cggggctacc      2640
     ttatcattat tatcaatagg gcagattaat ctgtcgcgcg acaatggtga tttattatta      2700
     caaaagactc aactcggatg ggtcgtcgtc ggtggactaa catcgaacga cggaagaatc      2760
     gtagcctcat gtcagctaac gaaattgcat gaacaaatcg caaaattctg gttaatcgag      2820
     gatacgacat cggagcgacc gaaaatttca gacgcgtcgg aatgtgaaca acatttcata      2880
     cagaatacga cacgcgacga gtccggcaga tacgttgtgc gattaccatt ccgtcataaa      2940
     gagtacgatt tcggaaattc acgctcaatc gcattgcgtc gcttccacgg gttacaaaaa      3000
     cgactagaag ccaatccgat actcaagcag gaatatacgc gagtattaga cgaatatgtt      3060
     agtctcggac atatgtcttt aattccgaat gactctggaa acggatatta ccttccccac      3120
     cacgcggtcg tgaaaacgac gagcgccacg acgaaggtga gagtagtttt cgacgcgtca      3180
     gccaaaacgg ataggggcgc atctctaaat agctttttaa tggtcggtcc tacagtacaa      3240
     gataaactat ttgaacattt gtcgcggttt cgtacgcatc gatacgtaat aacagccgac      3300
     attgaaaaaa tgtatcggca aatttggata catccggacg atcgacaata tcagaaaatt      3360
     ttctggatac acaacaacaa aattaccacc ttccaactca acacggtcac gttcggaata      3420
     tcctccgctc cattcctcgc tatccggtca attcaacaac tcgcgatcga tgaaagagag      3480
     acatttccag tcgccgcgga aatcttacgc cgagatctat acgtagacga tctgttaacg      3540
     ggggccaacg acttagaaat gctcaaacga atacgcgacg aaattatatc gatattgagg      3600
     cgcggcggtt tcaatatacg tcagtgggca tcgaaccacc cacaagcgct ggaaggcttg      3660
     aacgaacgaa caatagacgt agaatttctt acgaaggaag atccgatcct aaaaactctc      3720
     ggaatttcgt ggaacgcgcg ccgcgacgaa tttttataca acgtcaagca cattaaacct      3780
     atctcgcggg tgtctaagcg gcatatacta tcggaaatcg ctaaaatatt cgatccgtta      3840
     gggctgctcg ggcccatcat tctcgcgtca aaaatgttaa tgcaggaatg ttggaaggcg      3900
     caaatctcgt gggatgaatc tgtacccacc gttttgcatt cgtcatggct gtcatttaca      3960
     gaacagctaa atatgatcga cggactaact attccgcgtc aattaataat taataatccc      4020
     aaaagcgtgc aggtacacgg tttttgcgac gctagcaaga taggatacgg cgcctgctta      4080
     tacgtacggt cctgcgacga acagggcaac accctcgtgc ggttatggtg ctctaagaca      4140
     cgcgtggccc cccttaaaga aacaacaatt ccgcgacttg aattgtgcgg ggccttaaca      4200
     ctcgcaagat tgtttaagga agtgtcgaat tcatggaatt cgtgcccgaa caaaattact      4260
     ttttggtgcg attctatgat tgtacttcat tggctaaaga aggcccccgc gacacttaag      4320
     gtatttgaag cgaatcgagt gggggaaatt caaaagataa cagacggtct cgagtggcgg      4380
     catataaaat ccgaacataa tccggcggac gcgttgtcgc gaagtcagtt cccgcgggag      4440
     ttcttaaaaa atgaatcgtg gttcgacggc cccgcgtggc taagccggcc cgaagagaat      4500
     tggccagagt caattgaaat ccccattaaa gatctgcccg ggttaaaaaa ggccgtttgt      4560
     ctactatcct caaaactcga aacaagatac atatacgacg gattttcctc ctatacgcga      4620
     ttaactcgcg ccattgcgta tggcttacga atgttaccgt caaaccgaaa taaaggcgcg      4680
     cttacgatac aagaggtatg cgaggcggag gtccgaatac taaaactgat acagaatgaa      4740
     caattcgcga atgagattac tagaatttca aattcacaag acgtaaaggg ctcaaaatta      4800
     gcatcgttaa gtccaatact agatcaatca ggtttacttc gcgtgggtgg caggctgcga      4860
     aatgccgcca ttcccatttc gcaaaaacac ccgatattat taccgtcaca tcatcacgta      4920
     actgatctaa ttattaaaaa cgttcacgaa aaaaattatc acgccggcat ccaaacgaca      4980
     ctttatgcag tacgttatcg cttttggtta ttagacggaa agaatcagat acgaaagata      5040
     gtgagacaat gcgtacgctg cattagattc cgcgcgtcac ctgttgagta taaaatggcc      5100
     gacttaccaa aatcaagatt gaacgaatcg atcgcattta atcatacggg actcgatttc      5160
     ttcggaccaa tgttcgtaaa ggagaaaaag caacggaaca gaggccgagt caaagtatac      5220
     ggatgcgttt tcatttgtat gtcatcaaaa gccgttcata tcgagatcgt tagcgacctg      5280
     tccacggaag catttctagc ggcattaaaa cggttcatgg gacgtagagc catcccagca      5340
     cacatatatt cggacaatgg cacaaatttc ataggtgcta ataatcaatt acgcgaatgg      5400
     tacgccctat atgaatcagc cgaatttaag actcaaataa acgaatttgc gactacaaac      5460
     aaaatttctt ggcactttaa ccctcccctc tctccccatt tcgggggcat ttgggaggct      5520
     gcagtcaagt catttaagca tcacttcaaa cgagtgatag gagaccgctt attcacatat      5580
     gaagaactca atacgctagc cattgaaatc gaagccatac tgaactcacg gcctttgtgc      5640
     cctatatcta ccgaccctaa tgaccccctg gctttaacgc ctgcacacct tttagtgggg      5700
     cgaccgctca cgatgctacc tgaaaataat tacttatatg ttccagagaa tcgccttact      5760
     tcctggcgac tgatatccaa ggcccgacaa gacttttggc gcaaatggca cgtcgaatat      5820
     ctgacggaat tacaacgacg acaaaaatgg accaagtcca ataccgaact gaaacgtgac      5880
     tcgattgtca taattatcga caaaaattta ccgtgcatgc ggtggcagct tgggcggatt      5940
     gtggagctac atcctggaga cgacgggctg gtcagagtag ccagcgtcaa gacttctcaa      6000
     ggaatcttca agcgaaacac gaaattattg tgccctttaa caaccgattc gtagtttaag      6060
     cgaacttgtc cattgttttt tcttacgaca gttatgtaat aatcgcattc ggataagcgc      6120
     caacccgaag gacgtataca gtgacgtatc gacattatat tatgtaataa tacatcattt      6180
     ttcatatgtt gatcgctacc tctcaacggg gggagga                               6217
//
ID   BEL-7_MoPha-LTR repbase;    DNA;    INV; 605 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-605
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1153-1153 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 605 BP; 177 A; 131 C; 135 G; 162 T; 0 other;
     tgttccgtag aacagattta gaaaattcca gaacaagcga gaagttcccg tagcgtgaag        60
     tggggatgtt agacaagatg atgcaacttg tgaccgccca cggtgtaaaa caacgaatga       120
     ccgtgaatct atgaccgcct accttacaag gtaggggtag cgggttacgt agggtcagcg       180
     aaaaggatac tcacttctgt gcgagatctc gtctagtacg gtcacgtatt tagtctaaag       240
     tcagtgcgat tattcgtgta attgttttag tatatacatt tatataacct tcgaacgttt       300
     atcataagac aattcaccaa ctgtcagggt tatcccgcag ttgcagtgta gcgagtctga       360
     ctcgcgtacc ggggccccgc gtacccgcgt ataatacgaa ttataatacg aacgttataa       420
     cgatacgagt agtcgaagca ttactaactc gtataatcac tgaggggttt ttatgccgta       480
     aggcttttcc cctacgagca ataaaggttt gtccctgagc tcaatcaaac gtttcattta       540
     ttcaacctcc caccaaaaaa tcgaaatagc ggaacttatc cttaccggaa ggtttcgacg       600
     ataca                                                                   605
//
ID   BEL-7_SI-I  repbase;    DNA;    INV; 6252 BP.
XX
AC   AEAQ01030469;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SI_;
KW   BEL-7_SI-LTR; BEL-7_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-6252
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030469; Positions     642    6893.
XX
CC   Positions [5135-5686] - Integrase core
CC   'CTTTT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           861..3110
FT                 /product="BEL-7_SI-I_2p"
FT                 /translation="MSKDELSKLIVRGRIKAKLTAFSTYLERAATESVKIA
FT                 ELPIRLEKAEGFWQEFDITQSQIEDLENTVAQFTERENFENLYHAIITSAR
FT                 ALQSRQDQANRPSSVNSVPERSVGNPQVNVFAQPVGPTKVKLPNIELPKFD
FT                 GSYNKWIPFRELFESLIDANAALPAIQKLHYLKLALTHEAAKVIQSLELSN
FT                 ANYEIAWDLLKQRYENKRLIVHHMQELLDLAPIVKESHAALRQFIDGISQH
FT                 IQPLIKLGQPVEHWNTILIHIFTPKLDKITKREWELKRATIDTFPTLNEFI
FT                 EFLNTRSAFLESLSYSANNTNSVSSVNKSHNKAVICACVSEEKSSCPVYQG
FT                 NHELPDCGTFRKWSAAEHMTEIKKRRLCIRCLKNFHGRNCKASECKRCKGY
FT                 HHTMLHLEKTIKPDKEANQTEPSTGATKTSATDKQIVATVTQAPTTTLMHC
FT                 ATKGPLQVMLATAIIYIKDQKGILHECRAFLDSGSHSNFITCKLSDRLQLL
FT                 KQQTTMTITAINEIPVKTSQQITATIQSRYNAFQATLPFFTIPKITKRLPL
FT                 NKVDLRKVEIPERIQLADPEFHIPATIDILLGASVFWDLLYVGQIKIFKQQ
FT                 PTFRKTQLGWIVAGAMELHHMPTTMTTYCGFSSERTLCDQLQKFWQIEEIT
FT                 SSRHLSQEETTCEKHFTDTIRRTEDGRFVVQLPLKRNPSKLGDSYEIARKR
FT                 FQSIERKLNKDPTLKKEYHAFIQEYLQLGRMSEVEERDSTVKQAICRIMR"
FT   CDS           3200..6076
FT                 /product="BEL-7_SI-I_1p"
FT                 /translation="MMVGPTIQDELFCIILRLRQHKYVMSADITKMYRQIW
FT                 MHESQRDLQRILWRWTPDEPLRTFRLNTITYGTSSAPFLATRCLTEIAQLH
FT                 HSKHPAAAEIIRRDFYVDDLLTGKDEIGELVKLQRDIIQILKTAQFELRKW
FT                 RSNAPELCTTEIDKESTVPIGEEVKTLGLPWNTTSDSLTYKACTNSSNKRI
FT                 TKRSMLSDIAQLYDPLGLLGPVIVQAKIMLQELWQLKLGWDESMPMQSHSS
FT                 WKKWRQHIECVNHISIARQVICDKPTFIELHGFCDASEKAYGACVYICSIN
FT                 AKQERTIKLVCAKSRVAPLKRISMPRLELCGVLLLAQLCGKIKDAMIIPIK
FT                 DTHHWSDSTITLAWIAGEPHQWHTFVANRISEIHRLTDKHKWHHVRSDQNP
FT                 ADLLSRGVNAEDLKGKQLWWEGPSFLQQQSGFNSHTPPDLKDIPERKGTNP
FT                 CLAAMESEGPDTTLIQRFSSFTRLKRVVAYCLRFAANARLKGSRLYLKRSG
FT                 VLSVQELEDSTVVIIKQVQSVEFADELRSLQSNSPVNHKSELRNLHPFLDS
FT                 KGQIRVEGRLSHTQLPYSQKHPIVLPGKHHITELLVRHEHYRNLHAGQQAV
FT                 LPAIRTRYWPLSGRIAIRRVLRRCIVCFRAQPVCIKQLMGDLPRHRVIQAR
FT                 PFLNTGLDYAKPFSVKLSRNKTSKAYVCLFVCFAVKAVHLELVNDLSTTCF
FT                 LNALKRFVARRGRCINLYSDNGTNFVGANNALKEVKEILTKEATQDQIKTF
FT                 LAEQSIAWHFIPAYSPHMGSLWEAAIKSAKTHMRKVIGSMTLTLEELYTVL
FT                 TQIEACMNSRPLTLISQDPNDLIALTTGHFLIGEPLTAIPECEVSDVPSNR
FT                 LNRYEYLIQLKQHFWKRWSQEYIAQLQPRTKWQIAKENNIRIGTMVLLKNE
FT                 NTPLMTWLMGRILESHPDKKGLIRVVTIRTKNGTCQRAISKICLLPVDSMP
FT                 LTDA"
XX
SQ   Sequence 6252 BP; 2018 A; 1363 C; 1387 G; 1484 T; 0 other;
     ttagtcattc gagccggatc gggcaccaag aagaggttag ccataatccg tccacgcaac        60
     aagtaaggct gggcggacac acgcatctcg gaaggacgca gacgaatgag acagatccac       120
     gataccgtcg ccaagtaaag aaggtcagtt aagggcagat agtcgattga aggtacgaga       180
     ccacgcagga aatagcaaga ctcgcgccgt ctttacatta gaacggtacc gacgatcggc       240
     gaaactagca tcaaggcatc cccccccccg cccgaagtaa aacaacgagc gtgaggcata       300
     acagcaacgc acgtttgcac gcaaagaaat aaattctctc accgcctcgt tctttcgggg       360
     ggacagagga aagaactcaa caatcgtggt gaatgaaggg ccagagagcc gatcgaggta       420
     agcaaagatc gacgaagaca gcaaagcgta tcgttctccc ctcgccgctc ggcagaagtc       480
     actaacgagc gagaggcaaa gcgacgacgc gcttcaacca aggttaggtt aggatagccg       540
     gtcgaggtaa cgacgatcgg cggatacatc gacagcgaat tgtcccccct cctcccccac       600
     gccgctcggc agccgaaatc accattgaac gagagatatt acgaagacgc gcgtcttttg       660
     cgaaaaggag aatattgccc cgccgccccc tcctcagtaa acagaagcag gagcttcgtc       720
     aagcgcggcc atcattaagg cgacatctca aggagcgcaa gtattctact caaacgacat       780
     acgtggtcta acgagtttgt tctttattgt tgaaaaaaaa aattgtattg agtaattaat       840
     attaagtaat attaagtaaa atgtcaaaag atgagctgag caaattaatt gtgcgaggta       900
     gaattaaagc gaagttaacc gcgtttagca catatctcga aagagcagca acagagtccg       960
     taaagatcgc ggaattgccc atcagattag agaaggcgga agggttctgg caagagtttg      1020
     atataactca atcacaaatt gaagatttag agaatacagt agcgcaattt actgagagag      1080
     aaaatttcga aaacttatac catgccatta taacttctgc cagggcactt cagtcgcgtc      1140
     aagatcaagc aaatcggcca agttcagtaa actctgtacc tgagaggtca gtaggcaatc      1200
     cacaagttaa tgtttttgct cagccggtag gacccaccaa agtaaagttg ccaaacatag      1260
     aattgccaaa gtttgacggg agctataata aatggattcc atttcgcgaa ttgtttgaat      1320
     ctcttataga cgctaatgcg gcgctaccag caattcaaaa attacattat ttaaaactgg      1380
     cattaactca tgaggccgct aaagtaatac aatcgttaga gctctctaat gccaactatg      1440
     aaattgcatg ggacctactg aaacagagat acgaaaacaa acgattaata gtacatcata      1500
     tgcaagaatt gcttgatctg gcaccaattg taaaggagtc tcacgctgcc ttgcgacaat      1560
     ttatagatgg catttcacaa catattcagc ctttaattaa attaggacag ccagtagaac      1620
     attggaatac aattttaatt catattttca cgcctaagtt agataaaatt actaagcgag      1680
     aatgggagtt gaaaagagct acgatagata cattccccac actaaatgaa tttattgaat      1740
     ttttgaatac tcgcagcgcg tttcttgaat cactgtctta ctcagctaat aatacaaact      1800
     ctgtttccag cgttaataaa tcacataata aagctgtcat atgcgcatgt gtgtcggaag      1860
     agaaatcaag ttgtcctgtt taccaaggta atcatgaact acctgattgt ggcacctttc      1920
     gtaagtggtc tgcggcagag catatgacag aaattaagaa aaggcgactg tgcatcaggt      1980
     gtttgaagaa ttttcacggc aggaactgca aggcgtcaga atgcaaacgg tgcaaaggct      2040
     atcatcatac catgctacat ctcgagaaaa cgataaagcc ggacaaagaa gcaaatcaga      2100
     cggagccttc tacaggagca accaagacgt cggcgacaga taaacagatc gttgccacgg      2160
     tcactcaggc accaacaacc acattgatgc attgcgccac taaaggaccg ctacaagtaa      2220
     tgttagcaac ggccataatc tatataaagg atcaaaaagg catacttcat gaatgtcgag      2280
     ctttcttgga cagtggttcc cactccaatt ttatcacctg caaactcagt gaccgccttc      2340
     aattgctgaa acaacaaacc acaatgacga tcaccgcaat taatgaaatt cctgtaaaaa      2400
     ctagtcagca aattacggca acaatccaat ctcgctacaa cgcatttcaa gcaacgcttc      2460
     catttttcac cattccaaaa atcaccaaga ggctgccact aaataaagta gacttgagga      2520
     aggtcgaaat tccagaaaga attcagttag cggacccgga atttcatata ccggctacca      2580
     tagatatact attgggagcg agtgtctttt gggaccttct gtacgtagga caaataaaga      2640
     tattcaagca gcagccaacg ttccgaaaga cacaacttgg atggatagtt gcaggagcaa      2700
     tggagctcca ccacatgccg acaacaatga cgacgtattg tggcttctcc tcagaacgga      2760
     cattgtgcga tcaattgcaa aaattctggc agatagaaga gattacatcg agccgccatt      2820
     tatcacagga ggagacaact tgtgaaaaac attttactga cacaatcaga cggacggagg      2880
     atggtagatt cgtagtacaa ttgccactaa agagaaatcc ttcgaaactg ggagattcct      2940
     atgaaatagc gagaaagaga tttcaatcaa ttgaacgcaa attaaataag gaccccacat      3000
     taaagaagga atatcatgca tttatacagg aatacttgca gctgggccgt atgtcggaag      3060
     ttgaagaaag ggacagcacc gtcaaacaag ctatctgccg catcatgcgg tgattaaagc      3120
     agaaagcacc accacgaaag tgagagtggt ctttgacgcc tcttacccca ctagctcggg      3180
     aaattcgcta aatgacatta tgatggtcgg gccaacgata caggacgaat tattttgtat      3240
     catcttacgt cttcggcagc acaaatatgt gatgtcagcc gacatcacta agatgtacag      3300
     gcaaatctgg atgcacgagt cacaacgcga ccttcaaaga attttatgga gatggacacc      3360
     cgatgagcct ctacgtacat tccgattaaa tacgattacc tatggtacgt ccagcgctcc      3420
     ttttttagca acgagatgcc tgacagagat cgcgcaacta caccatagca aacatcctgc      3480
     agcggcagaa atcatcaggc gagatttcta cgtcgacgat ttgttgacgg gtaaggacga      3540
     gataggtgaa cttgtcaagc tacaaaggga catcatccaa atattaaaga ctgcccaatt      3600
     tgagctgagg aaatggaggt caaatgcacc agagctctgt acaacggaaa tagataagga      3660
     gtctacagta ccaatagggg aggaagtcaa gacccttggc ttaccgtgga acactacatc      3720
     agatagtctt acatacaagg cttgtacaaa tagcagcaat aaaaggatca caaagcggag      3780
     catgctgtcc gatatagctc agctatatga cccgcttgga ttgttgggtc cagtgatcgt      3840
     gcaagcaaaa ataatgttgc aagaattgtg gcaactcaag ctgggctggg atgagtccat      3900
     gcctatgcag tctcattcaa gttggaaaaa atggcgccag cacattgaat gcgtcaacca      3960
     catctccatt gcaaggcaag tgatctgcga taaaccaaca ttcatagaac tacacggctt      4020
     ttgcgacgcg tcggagaagg catacggcgc gtgtgtgtat atctgcagta taaatgcgaa      4080
     gcaagaacgc acaattaaat tagtatgcgc caaatcgcga gttgcaccac tcaaaaggat      4140
     atcgatgcca cgtctagagc tttgtggagt gctcctgtta gcccaactct gtggcaagat      4200
     aaaagacgcc atgataatcc ctataaagga cacgcaccat tggagtgact ctactattac      4260
     gttggcgtgg attgcaggtg aacctcatca gtggcacaca tttgtcgcaa atagaatatc      4320
     ggaaatacac cggctaacgg acaagcacaa atggcaccat gtgcgatcag atcagaaccc      4380
     agctgatctg ttgtcgcgag gtgttaacgc ggaggactta aaaggaaaac aattatggtg      4440
     ggaaggacca tcattcttgc aacagcagag cggttttaat tcacacacgc ctcccgatct      4500
     gaaggatata ccagaacgca aaggaactaa tccgtgtcta gccgctatgg aatcagaagg      4560
     gccggacacc actctcatcc agaggttttc atcgttcaca cgtttaaaaa gagtcgtcgc      4620
     gtattgcttg cggtttgcag ccaatgcacg actcaaggga tctcgcctat accttaaacg      4680
     aagcggagtt ctatctgtgc aggagctaga ggatagcact gtagtcataa taaaacaagt      4740
     tcagagcgtg gagtttgccg acgagttgag atctctgcaa tctaattcac cggtcaatca      4800
     taaaagtgaa ctacgtaatt tacatccgtt cctagattcg aaagggcaaa tcagagtgga      4860
     ggggagactt agtcacactc agctaccata ctctcaaaaa catccgattg tgcttccggg      4920
     gaagcatcat atcaccgagt tgctcgtaag acatgaacat tatcgaaact tacacgcggg      4980
     acagcaagcg gtgttgcctg ctattcgtac acgatattgg cctttgtctg gaagaatagc      5040
     gattcggaga gtcttgagaa gatgcatagt gtgttttcga gcacaaccag tttgtataaa      5100
     gcagttaatg ggcgacttac ctcgtcatcg agttattcaa gccagaccat tcctcaacac      5160
     ggggcttgat tatgccaagc cgttttcggt aaagctgtct agaaataaaa cctcaaaggc      5220
     atacgtatgt ctattcgtat gttttgccgt taaagctgta cacttggaat tagtgaatga      5280
     cttgagcact acatgtttcc ttaacgctct taaacgcttt gtcgcaagac gtggacgttg      5340
     catcaattta tactctgaca atggtaccaa ctttgtgggg gccaacaatg cacttaaaga      5400
     ggtaaaggag attctgacaa aagaagccac tcaagatcaa ataaaaactt ttttagccga      5460
     gcaatcaatt gcttggcatt ttattcctgc atactcccca cacatgggaa gcctctggga      5520
     ggctgcaata aaatcagcaa agacacacat gcgcaaggtg attggttcga tgacactgac      5580
     cttagaagaa ttatatacag tattgacaca gatagaagcg tgcatgaatt cgcgtccgct      5640
     gacgcttatt tcacaagatc ccaatgatct aatcgcacta acgaccgggc acttcctgat      5700
     cggggaacca ctcacggcga ttccggagtg cgaagtgtcc gacgttccta gtaatagact      5760
     caatcggtac gaatatttaa tacaactcaa gcaacatttt tggaaaaggt ggtcgcagga      5820
     gtatattgca caacttcagc cacgtactaa atggcaaata gccaaagaaa acaatatccg      5880
     tattggtacc atggtacttt taaagaatga aaatactcct ttgatgactt ggctgatggg      5940
     tcgtattctt gagtcacacc cagacaagaa aggtttgatt cgagtggtaa ccattcgcac      6000
     taaaaatggc acgtgccaaa gagctatatc aaaaatatgt ttgttacctg ttgatagtat      6060
     gccgttaaca gatgcataat ttaagacccg tgtcacattc aaactatgtg ttcagaatta      6120
     aaattagaat aatttaagca aattttaatt taagttgttc tgttccttat tagcatgttt      6180
     atttacattt aagtcaaatt tatatactca agatatttgt tgtaaaacgt aagttttcca      6240
     aggcgggcgg aa                                                          6252
//
ID   BEL-7_SI-LTR repbase;    DNA;    INV; 287 BP.
XX
AC   AEAQ01030469;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SI_;
KW   BEL-7_SI-I; BEL-7_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-287
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030469; Positions     355     641.
XX
SQ   Sequence 287 BP; 76 A; 66 C; 55 G; 90 T; 0 other;
     tgtttacgcc gtttatataa ttgtgctcaa tcgactagtt attttctttt ggtttcttcc        60
     cgctgtcact agtaatggcc gtaccgcggc gctgtagaaa agtttagtta agttgggagt       120
     tgggagaact gcgacgaacg accgttagca tttttactct ctcacgtatt gtatcactag       180
     tggagtcata ccgcttatta tcactcgtcc aaataaactg gtagcagttc acgatccaga       240
     aacattcatt caatcccgat accacccaac aattcaagta tcgaaca                     287
//
ID   BEL-7_SiCu-I repbase;    DNA;    INV; 5686 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5686
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4982-4982 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..5322
FT                 /product="BEL-7_SiCu-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MSPPTVFQRMEADRETLRDHLNLLQQELTAHETTALP
FT                 RTQVETYLEEALETIKLLADNHKQLRLFAPAGTDMDPYVADYQHLYKMATR
FT                 LHAGYHGIAMSFPPPTTTTSSSSSSSRSSASAPPPPPPPKPCIKLPPLELP
FT                 KFSGNLQEWVSFRDMFVTAVHTSSLTKVEKLTQLKALLTGEAARQIRSLIL
FT                 CDANYDIAWKSLQDRYENNRELLFSIIRRLINQPVIASASAQSIRSLIDTT
FT                 NECVRSLEILAIPTQHWDAILLYLIFSKMDSSSRELWEQSLPDTAIPPLSK
FT                 LTDFLEQRARALAASSAPPQQQRQQNRPPQAVRNHHVATSTCKLGCSSPHP
FT                 TYRCPAFQQLTVPQRQETAKQHHLCSNCLFKGHNASACPSTSSCKICSRKH
FT                 HTMLHLDGSGWKQHQQAQQTTQQDSSKQKQADSSSSVSSHHITPVGELTTG
FT                 ILATAKIRIIGGNXLYRSLIDPGSTNSYITEKAARQLNLPLRPCSIPMTGL
FT                 SSAPVGTASHVTTFTFTSRFNNVPPYSATAIVVKSISANIPVDKLKKDNWS
FT                 HLQNLELADPNYHLPEKCDILLGTDVFWTTLENEKISGSSGQPHAIKTTLG
FT                 WLVAGANSTTTPVVTFNTSADLDFQLRRFWEQEAVPEDNKLSPEEEQCEQH
FT                 FATTHKRDPAGRFIVNIPFKKDVKMELGSSRQAAVKRFLSMEKRFANPXTK
FT                 NINLIXSLTSQWSQYKDFMLEYEQLGHMQLIPAAEINAPQPTYYIPHHSVL
FT                 KESSTTTKLRVVFDASAATSTGVSLNDCMMVGPQLQDNITDIMLRFRLHPI
FT                 AFTADIAKMYRQISVTPADADLQRIVWREHPSLPLRDYRLQTVTYGTSSAP
FT                 YLAVRCLQQLAKDEEHRYPAASKIARRDFYVDDAASGCQSLEEAKTTVQQL
FT                 MDLCMSGGFQLRKWTTNSKELLNFIPAELRETSSLVEVQQDTTIKTLGVFW
FT                 NTTEDIYTFRLNLPPDMPGSYTKRIILSDIAKIYDPLGWLAPAIITYKIFM
FT                 QELWKTQLDWDDVLPSQLQNQWLAMKNALLDIERIRIPRCVTQQQXSSFIL
FT                 VGCSDASTKALSAAVYLCCEFENRPPTCHLLTSKTRVAPVKHVSLPRLELN
FT                 AAVLLSELLKTTLAALHLNITTIRAFTDSTITFHWINSSPSRWKIYVRRRV
FT                 QAIQDNIPTASWFHISGDRNPADCASRGISPDDLLHHPLWWNGVPEFYQPY
FT                 ISQTDLLEDDLRQMETEAQPISSHHAQPTPLPPVFTKFSSFRTFQRVMAYA
FT                 LRFIHNTRRRPIRWSGSLTTSELANSRFFILRLLQQHSWPLEYDALFNKGP
FT                 LPTSCSLIKLQPFMSEEGLIRVGGRLRHADVPYSRKHPILLPRSSHITTSI
FT                 IWDLHHTLLHGGATIVLSSLQQQYWITNGRDAVRFVIKKCAPCARHQAILM
FT                 KQVMGDLPSHRVNPARPFSKVGVDYAGPISIRPMVRSKVSLKCWLAIFVCF
FT                 ATRAIHIEVVSSLSTDCFLAALRRFVSRRGRPSDIFSDCGTNFKGSDKALN
FT                 XIIKLSQQKEVQDSSSSQAITWHFNPAGAPHFGGLWEAGVKSIKFHLRRVM
FT                 GSSILTYEEMHTLVVQIEGILNSRPLVPASNDPSDLNVLTPAHFLIGSAIT
FT                 GLPEQNHXDTKECYLKRWQLLQQQQQLFWKRWSSEYLTRLQQRPKWWKPSP
FT                 NLEVGHLVIIKDERLPPLKWKLGRVLAVHPGADGHVRVATLKTADGEMKRP
FT                 VVKLSLLPITLNNEN"
XX
SQ   Sequence 5686 BP; 1451 A; 1727 C; 1199 G; 1285 T; 24 other;
     tttttggtcc tcaccgagcg gatttccacc gtctaaaaat cgtaaggaaa tttttgaaga        60
     ttaaatttaa caacgttttt tctggggatc tctgcagcca gctgaccgca gttcatcatg       120
     tcgccaccga cagtattcca gaggatggaa gcagatcgag agaccctccg ggatcacctc       180
     aacctccttc agcaggagct caccgcacac gagacgacgg ccctgccaag gactcaagtg       240
     gagacctatc tggaggaggc tctggagaca atcaagctcc tggcagataa ccacaaacaa       300
     ttgaggttat ttgccccagc aggaacggac atggacccgt acgttgccga ctaccagcac       360
     ctctacaaga tggcaacamg actccatgca ggttatcatg gaatcgcmat gtccttccca       420
     cctccaacga ctaccacctc atcatcgtct tcttcatcac gctcatcagc atctgcgcct       480
     cctcctcctc cacctccgaa gccgtgcatc aagctccctc ccctggagct scccaagttt       540
     tcggggaacc tacaggagtg ggtttccttc cgtgacatgt ttgtcaccgc cgtccacacc       600
     tcatccctca ccaaggtgga gaagctgacc cagctcaaag ctcttctcac cggtgaggca       660
     gcacgacaaa ttcgctcact catcttatgt gatgcgaact acgacatcgc ctggaaatca       720
     ctccaggacc gctacgagaa caacagggag ttgttgttct csatcatccg ccgcctcatc       780
     aaccaacccg tcattgcctc cgcatcagca cagagcatcc gctctctaat tgacacgacg       840
     aacgagtgcg ttcgctcatt ggagatactg gccattccma cccagcattg ggatgccatc       900
     ctcctctacc tcatcttctc gaaaatggac tcctcctcca gagagctttg ggaacagtca       960
     ctccctgaca ctgccatccc tcctctctcc aaactaacgg attttttgga gcaacgtgct      1020
     cgagcccttg cagcgagcag tgccccacct caacaacaac gtcagcagaa caggcctcct      1080
     caggctgttc gaaaccacca tgtggccacc tccacatgca agctgggatg cagcagccca      1140
     catcccacct accgatgtcc agctttccag caactcaccg ttccacagcg acaagaaaca      1200
     gccaagcagc accatctgtg ctccaactgc ctattcaaag gccacaacgc atcggcttgt      1260
     cccagcacaa gcagctgcaa aatttgcagc cgtaagcatc acaccatgct ccacctggac      1320
     ggatcaggat ggaaacagca tcaacaagct caacaaacaa cacagcagga tagcagcaag      1380
     caaaagcaag ctgattcatc atccagcgtt tcatcccacc acatcactcc agttggagag      1440
     ctgacaactg gcattttagc aacagctaaa ataaggataa ttggcggaaa tamtctctac      1500
     aggtcactca ttgaccccgg stccaccaac tcctacataa cggagaaggc agcaaggcaa      1560
     ctcaaccttc ctctacgccc atgcagtatc ccgatgaccg gactctcmtc agctccagtt      1620
     ggaacagcaa gtcacgtaac tacmtttacw tttacatcaa gatttaacaa tgtgcctcct      1680
     tactctgcca cagcaatcgt cgtcaaatcm atcagcgcca acatccctgt tgacaagctg      1740
     aaaaaggaca actggagcca cctccaaaac ctggaactag cagaccccaa ctaccatctc      1800
     ccagaaaaat gtgacattct tctggggact gatgttttct ggacaaccct ggaaaatgag      1860
     aagatttccg gaagcagcgg ccagccacac gccatcaaga cgacacttgg gtggcttgtt      1920
     gctggagcca actcaacgac aactccagtg gtcaccttca acacatcagc tgacctggac      1980
     tttcagctac ggagattttg ggagcaggaa gccgtaccag aggacaacaa actttcacca      2040
     gaagaggagc aatgtgagca acatttcgcc accacccaca aacgtgaccc cgctggtcgc      2100
     ttcatcgtca acattccctt caagaaagac gtcaagatgg aactgggatc atctcgtcaa      2160
     gcagctgtta agagattcct cagcatggag aaaaggttcg ctaacccawa cacaaaaaat      2220
     attaatttaa tcaawtcctt aacctcccag tggtcccaat acaaggactt catgctcgaa      2280
     tacgagcaac ttggacacat gcagctcatc ccagcagcag agatcaacgc cccgcagcct      2340
     acttactaca tccctcatca ctcagtgctg aaggaatcca gcaccactac taaactccgc      2400
     gttgtttttg acgcctccgc cgccacgtca acgggagtmt ccctcaacga ctgcatgatg      2460
     gttggacctc agctgcagga caacataacc gacatcatgc tacgctttcg tcttcatccc      2520
     atcgccttca ccgctgacat tgcaaaaatg tatcgtcaga tcagcgtcac ccctgcggac      2580
     gctgaccttc aaaggatcgt ctggagagaa catccgtctc tcccccttcg cgactaccgc      2640
     ctccaaaccg taacatacgg gacttcgtca gcgccttacc ttgccgtaag gtgcctacag      2700
     cagcttgcca aggatgagga acatcgttac cccgccgcat caaaaatcgc ccgtcgtgat      2760
     ttttacgttg atgacgccgc ctccggttgc caatcactgg aggaagccaa gacaactgta      2820
     cagcagctga tggacctgtg catgtctggt ggcttccaac tccggaagtg gaccaccaac      2880
     agcaaggaac tactcaactt tatccccgcc gaattgcgtg agaccagctc actcgtggaa      2940
     gtccaacagg acacaacaat aaaaacgctc ggtgtgtttt ggaacaccac cgaggacatc      3000
     tacacatttc gtctcaacct gcccccagac atgccaggat cctacaccaa gaggatcatc      3060
     ctctcagaca tcgccaaaat ttacgacccg ctcggctggc tggcgccagc aatcatcacc      3120
     tacaaaattt tcatgcagga gctctggaag actcagctgg attgggacga tgtgcttcct      3180
     tctcaactcc agaaccagtg gcttgccatg aaaaatgccc tcttggacat cgaaaggatt      3240
     cgcatccctc ggtgcgtcac tcagcagcaa wgctccagct tcatccttgt cggatgctcc      3300
     gacgccagca ccaaggctct cagtgcagca gtttatctgt gctgtgagtt cgagaatcgc      3360
     ccaccaactt gtcacctcct cacatcaaaa acacgagtcg ctccggtgaa gcacgtctcg      3420
     cttccccgct tggagctcaa cgctgcagtt ctgctatcag agctactcaa gacaacactc      3480
     gccgctcttc acctcaacat caccaccatc cgcgccttca cggactccac catcaccttt      3540
     cactggataa actcctcccc gtctcgmtgg aaaatttatg tgagacggag agtacaagcc      3600
     attcaagaca acatccccac agcctcgtgg ttccacatat caggagatag aaatccagct      3660
     gactgtgctt ctcgtggaat cagcccagat gacctcctcc atcatccgct gtggtggaat      3720
     ggagttccag aattttatca gccgtacatt tcgcaaacgg atcttctgga ggacgacctt      3780
     cgtcaaatgg aaacggaagc tcagccaatc tcatctcatc atgcacagcc gaccccgctg      3840
     cctccagtct tcacmaaatt ctccagtttc cgaaccttcc aacgagtgat ggcatacgct      3900
     ctacgcttca tccacaacac cagacgtcgc cctatcagat ggtcaggttc gttgacgaca      3960
     tctgagttag caaactcacg atttttcatt ttacgattac tccagcagca ctcatggcca      4020
     ctggagtacg acgctctgtt caacaaaggg ccactaccga caagctgttc cctcatcaag      4080
     ttgcagccct tcatgtcaga ggaaggactg attcgcgttg gaggtcgact tcgccacgca      4140
     gatgttccct actcaaggaa gcatcccatc ttgttgcccc gttccagcca catcactact      4200
     tccattattt gggacctkca tcacactcta ctacatggag gagcaacaat tgtgttgtcc      4260
     tcactccagc agcagtactg gattacgaac ggamgagacg ccgttcgctt cgtcatcaag      4320
     aaatgcgcac catgcgctcg tcaccaagcc attttaatga agcaggtcat gggtgacctg      4380
     ccctctcatc gtgtcaaccc agctcgtccg ttttccaaag ttggagtgga ctacgctgga      4440
     cccatctcca tccgaccaat ggtacgctcc aaagtgtcgc tcaagtgttg gctggctatt      4500
     ttcgtgtgtt ttgcaactcg tgcaatccac attgaggtgg tcagctctct ctctactgac      4560
     tgtttcctcg ctgccttacg gcgcttcgtt tccagamgag gacgaccttc cgacatcttc      4620
     tcggactgcg gcaccaactt taaggggagt gacaaggccc tcaacgmcat catcaaactg      4680
     tcgcagcaga aggaggtcca ggactcgagt tccagtcaag ccatcacctg gcacttcaac      4740
     ccggcaggag ctcctcattt tggcggactg tgggaggcag gagtgaaatc catcaaattt      4800
     cacttgcgcc gcgtcatggg atcatcaatc ctcacctacg aggaaatgca cactcttgtg      4860
     gtgcaaattg agggaatcct maactcacgt cctctcgtcc cagcatccaa cgacccatcg      4920
     gatctcaacg tgctgacccc agcacacttt ctcatcggct cggcaatcac gggattgccc      4980
     gagcaaaatc atswggacac caaggagtgc tatctcaagc ggtggcagct cctccagcaa      5040
     cagcagcagc ttttctggaa gcggtggtcc agtgagtacc ttactcgcct gcagcaacga      5100
     ccaaagtggt ggaaaccgtc gcccaacctg gaagttggtc acctcgtcat catcaaggat      5160
     gagcgtcttc cccctctgaa gtggaaacta ggacgagttc tggcagttca tcccggagct      5220
     gatggtcacg ttcgtgttgc caccctaaaa acagctgacg gagaaatgaa gcgccctgtc      5280
     gtaaagctaa gtctccttcc cataacatta aataatgaaa attaaattga tggttacgtc      5340
     tccctgtaat atgctacata atttttattt atgtttatcg tttttcagat ccttggcgtc      5400
     atttgggcga ctgataggca gctgccctct ctccggtcca agctggtttg acgggtccct      5460
     tggaaggtct cgtcagtcca cgccttgaat gagcgaggtg gggaagcagt gaggggacgc      5520
     attcatgcga gtctcagcct ccagttcgtc acatgtcgtc aggatcatta tcatcgtcgt      5580
     cgttttcatt ttaattttat aaaaattgac tgtatttttt tataattttg acctcatctt      5640
     tatgtatgta tgtatttctt gcttatccag caacgccccg ggagaa                     5686
//
ID   BEL-7_SiCu-LTR repbase;    DNA;    INV; 537 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-537
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4966-4966 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 537 BP; 155 A; 126 C; 73 G; 183 T; 0 other;
     tgttcgttca gtaaccttca cttaagccta agattgtgta gtatgtacct aaaactctgt        60
     gtgctattca tgttctctta ataattatca taatatgtta ataagcctgt taatattaat       120
     ttatgctaat agtaagcccc aatgtcaact ctgtactttt cctacgttgt tcttgttcgt       180
     tgacttgggt attacacgtg tatgacctat tttaccacga agaaagaaag gtcttcattt       240
     tgcctccatt gtcatttttc tgacacttct cgtacacact caaacgagtc aagtcgccat       300
     tttacaactt ctctgccctt caggcaataa ctattttacc tgctattttt actataaata       360
     aagtgacgct atttaagaga caaactattc tgtgcccgct gcatagatta tttcatccac       420
     ctccaaggtg gcatctctga gaagtcatag cgcacacaat tcaatcatca tcattttcaa       480
     caaactgcag aaattcccaa aacatcttca atacctacgt aacctgccca tcgcaca          537
//
ID   BEL-7_SpEx-I repbase;    DNA;    INV; 5664 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5664
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6889-6889 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..5608
FT                 /product="BEL-7_SpEx-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MDKKLLSNTPEDDDAQLNTFKKRRAGHKGKVTIFKNH
FT                 IESLKSKKKIALTELEILQLKNRLEVYKTLEHDFDVNQTLIEDIVGVSDEQ
FT                 LKEREQFDSEYQNQLALAMQLMRDSESTGITDGSVQTPNAGGTKAFIKLPT
FT                 IDLPHFSGEYHNWLEFRDTFQSLIHKNTLLDNIQKFHYLRASLQGEATHII
FT                 KSLEMSSENYRVAWDLINERYNNTRQLTNNHVHALFNISVIQKESSAALRQ
FT                 LIDTVSKNLRALDSLDEKTQFWDTLIIYLVASKLDSVTLRHWEVYKNTLNA
FT                 KPVLQNLKTYLKDRADLLQTLEEKHKQNHVDIKSNKPAQNQTSTSRSPSCP
FT                 LCKAQHYLFSCPDFKQMTVEKRIEKVSKMNVCSNCLYPGHEKKTCRGGTCK
FT                 YCSLKHNTLLHIEKPKSSSITCTSTQQTSVLLSTTLVDVLGSDGTFHTARC
FT                 LLDNGSTSSYVTKNLCTRLNLTLESINGSVSGINGQKTNILYRTNIQIKSL
FT                 HNSFTMNSSCLVLDEISNLIPNIRIQTEAITLPKHIKLADPRFHEPAPVDI
FT                 LLGADIFWKLMGSGRIQLGKQLPTLQETEFGWLISGCIPDTEKHTQDTCYF
FT                 TQNKNSDQLSRFWELDSLSDSQNTDPCDADACEVIFKQTTTRQSDGRFVVT
FT                 IPFKMSPDCLGNSYYQAKKRFLCLENRMNIDNHYKQLYCNFITEYINLGHM
FT                 TLNKTLNPQKIIQSNKHTLPDNTANSFTQPYNNNSHTHTSYYLPHHGIVRE
FT                 SSTTTKFRSVFDGSAKTSTKISLNEIQLVGPVVQDDLVAIMLRFRQYKYII
FT                 SADIEKMFRQIAVVEHQRPLQQIIWRENSTEPLQTYTLNTVTYGTASAPFL
FT                 ATRCIRQIGLDCLNNSDNTYDNKLISEVILHDFYCDDFLSGTDDESTLLEI
FT                 ATGVNTELKKYQFPLRKWKTNCPAVLRKLGFDNDSKDSTFNLSSNDPSKTL
FT                 GIYWNIHKDTISYSVHMDNITHNRITKRSILSTIGQIFDPLGLIGPCILEA
FT                 KIIMQQMWLHNITWDSEIPVSLQSQWKKFIQSLSSINQLTIPRRAIYDSPR
FT                 GIEVHVFCDASQHAYGACVYIRSYDYDGVISVQLLIAKGRIAPIKTLTVPR
FT                 LELCAAFTGIHLCQKVLSSLRSMGENYKCFYWSDSIIVLSWINTPIHKLKP
FT                 YINHKVTDILKHSTPQSWYYIPSKQNPADIITKCTNAQQLINSDLWFSGPD
FT                 FLRNDDNKCWPEQPRHLSVSDLPEIRSQSHLTHTDENSFIHNYSNFNKLTR
FT                 IVAYMLRFVNCCREKQNNSNKNKKLCVGQIKPLNTVELNNARYQLAKIIQQ
FT                 HSFPDEYLLLLNNKKLPVGHKLNSLNPFLDEFQLIRVGGRLANSPYNYDRK
FT                 FPILLHTNHYLTKIMFRTYHITLLHAGPQLLLAHIRQMFWPISGRNLARKT
FT                 TQSCLKCKRYQGKIVTPIMGQLPEERLHANFIFSNVGVDYAGPIMISNRKG
FT                 RGSVLIKSYICIFVCFAVKAVHLELVTDLTTVSYLAALNRFIARRGKPNNI
FT                 YSDNGTNFVGAARVITNFLKLHSESIYSRAAEQGISFHFIPPYTPHFGGLW
FT                 ESTVKSVKFHLKRVLGLAHLTYEEMYTLLVQIEGLLNSRPLTSLSSDPSDL
FT                 SALTPFHFLIGRTLTVLPHPQMSDCDPARLPRHQRVELLRQHFWKRFNREY
FT                 ISQLHQRTRWQRQKGEIAEGTLVIVKDEALPAAEWPLGRILKIYPGPDGVA
FT                 RVADIKINKGTIRRGFNKICPLLEEDERQN"
XX
SQ   Sequence 5664 BP; 1896 A; 1187 C; 1006 G; 1575 T; 0 other;
     tggtccttcg agcatttaat caagaatcgg cgccaggaat tcagctggcc gttacccacc        60
     agcagtcggc ggtcaacgac atcagcagtc ggcggtcggc gaactcagca tccagcagtg       120
     acaacggaca acattaaggg tttggtagca gcagtcgtga gttcgaacca atttcattct       180
     catctaacgc cagtccctta aattcaataa tcttttctaa atttttcact gtactattca       240
     cacaaatcct gcttacccac atttttttct ctctcccttc gccttgctct gagcgcgtct       300
     aagtagatag ctgcgtagta tcagtagact acctacttta tcgaataatt tcgtagatat       360
     ggacaaaaaa cttttgtcaa atacgcctga agatgatgac gcccagctta acacctttaa       420
     aaagaggaga gctgggcata aaggcaaggt cacaattttc aaaaatcaca ttgagtcatt       480
     aaaatccaaa aagaaaattg ctttgaccga gttagaaata ctgcaattaa aaaatcgttt       540
     ggaggtatac aaaactcttg aacatgattt tgatgttaat cagactttaa tagaagatat       600
     tgtcggtgtt tcagacgagc agttaaagga gcgggagcaa tttgactcgg aataccagaa       660
     tcaacttgct ctcgccatgc agctgatgcg ggacagtgaa tcaactggaa tcaccgacgg       720
     gtctgtacaa actccaaatg caggtgggac aaaggctttt attaaattac cgactattga       780
     ccttccacac ttttcgggtg aatatcataa ttggctagag ttcagagaca catttcagtc       840
     gcttatacat aaaaacactc ttttagataa tatccaaaaa ttccattatt tgcgagcttc       900
     tttgcaaggt gaggctaccc acattataaa atcattagaa atgtcttccg aaaattacag       960
     ggtagcctgg gatttaataa acgaacggta caataacacg cgtcaattaa caaataacca      1020
     tgttcatgca ctattcaaca ttagtgttat tcaaaaggaa tcttcggcgg cgctgaggca      1080
     gctaattgac acagttagca aaaatttacg agcactcgat tccttagatg aaaaaacaca      1140
     attctgggac acgttaatca tttatctcgt ggcaagtaaa ttagattcag tgacgctcag      1200
     acattgggag gtatacaaaa ataccctcaa cgctaagccc gttcttcaaa atttaaaaac      1260
     ttatcttaaa gatcgtgcag atttattaca aactcttgaa gaaaaacata aacaaaatca      1320
     cgttgatatc aagtcgaaca aaccagctca aaatcaaaca agtacatcac gatcccctag      1380
     ctgtccatta tgcaaagccc aacattattt gttttcatgt ccggatttta aacagatgac      1440
     agtggaaaaa agaatagaaa aggtttccaa aatgaatgtg tgctccaact gtttatatcc      1500
     cggacatgaa aagaaaacat gtcgtggcgg tacatgcaaa tattgttctc taaaacataa      1560
     taccctgttg catatagaaa agcccaagtc gtcttcaatc acatgcacta gcactcagca      1620
     gacatcagtg ctgttatcga cgacactggt ggatgtactt ggcagcgacg gtacatttca      1680
     tacagcgagg tgtctattag acaatggtag tacctccagt tatgttacta aaaatttatg      1740
     tactcggctt aatcttacgt tggaatcaat taacggatca gtttcaggta taaacggtca      1800
     aaaaacaaac attctttatc gaacaaacat acaaataaaa tcattgcata attcattcac      1860
     gatgaactcg tcatgcctag tgctagatga gatatctaat ctgataccta acattcgtat      1920
     tcagacagaa gcgatcacac ttcccaaaca tataaaatta gccgaccctc gatttcatga      1980
     accagctcca gtcgatatat tactgggggc tgacattttt tggaaactca tggggtccgg      2040
     aaggattcaa ttaggaaaac aactgccaac cttacaggaa actgaattcg gttggctaat      2100
     ttccgggtgc atacctgaca cagagaaaca tacacaagac acatgttatt tcacacaaaa      2160
     taaaaactca gatcaattat cacggttctg ggaattagac agcttatctg attctcagaa      2220
     tactgaccct tgtgacgcgg atgcgtgcga ggtcattttt aaacaaacta ctacaagaca      2280
     aagtgacggt agatttgtcg tcacaattcc attcaaaatg tcacctgatt gcttaggcaa      2340
     ctcgtattat caagcaaaaa agcgttttct ttgcttagaa aatcgtatga atatcgataa      2400
     tcattacaaa caattgtatt gcaatttcat tacagagtac atcaatctcg gccatatgac      2460
     tttaaataaa accctgaatc cacagaagat cattcaatca aataaacaca cactcccaga      2520
     caatactgca aactcattca cacaacctta caataataac tcacacacac atacatctta      2580
     ttatttacca caccatggca tagtacgtga atcaagcaca acaacaaaat ttagatccgt      2640
     gtttgatggt tccgcaaaaa cctcaacaaa aatatcactt aacgaaatac aactcgtcgg      2700
     gccagttgtt caagacgatc tcgttgcaat aatgttacga ttccgtcagt ataagtacat      2760
     catatcagct gacatagaaa aaatgtttcg tcaaatcgcg gttgttgaac atcaaaggcc      2820
     cctacaacaa ataatatggc gagaaaattc tacggaacca ttacaaactt acacactcaa      2880
     taccgtcaca tacggcacgg catcagcacc attccttgca actcgatgca taaggcagat      2940
     aggattggat tgtttaaaca actcagataa cacgtacgat aataaattaa tttccgaggt      3000
     tattttacat gacttttact gtgatgattt tttgtcagga acagatgatg agtcaacttt      3060
     attggaaatt gccacaggag tcaataccga acttaaaaaa tatcaattcc cattaagaaa      3120
     atggaaaacg aattgccctg ctgtcttacg taaactagga ttcgacaatg actctaaaga      3180
     tagtacattt aatttgagtt caaatgaccc atcaaaaacg ttgggcatat attggaatat      3240
     tcacaaagat actatatctt attcagttca tatggataat atcacacaca atcggattac      3300
     aaaacgaagt attttatcta caataggtca aattttcgac ccactaggcc taataggccc      3360
     ttgcatacta gaggcaaaaa taattatgca acaaatgtgg ttacataaca taacttggga      3420
     tagcgaaata ccggtttctt tacaaagtca atggaaaaaa ttcattcaat cgttatctag      3480
     tattaaccag ctgactattc ctcggcgagc aatatatgac tcaccgcgtg gaatcgaagt      3540
     acatgttttt tgtgatgcct cgcaacacgc ttacggtgct tgcgtatata ttcgtagcta      3600
     tgattatgac ggcgttatca gtgtacagtt gttaatagct aaaggaagga tcgcacctat      3660
     taagacatta acggttccgc gacttgaatt atgcgcagca ttcaccggta ttcatttatg      3720
     tcaaaaggtt ttatcttcac ttcgtagtat gggtgaaaac tataaatgtt tttattggag      3780
     tgattcaatt attgttctat catggataaa tacgcctata cataagttga aaccttatat      3840
     taatcataag gtcacagaca tactgaaaca cagtacgcca caatcatggt actacatacc      3900
     atcaaaacaa aacccagcag acatcataac aaaatgtact aatgcacagc aactaattaa      3960
     ttccgattta tggttctcag ggccggattt tcttaggaat gatgataata aatgttggcc      4020
     tgaacaaccc aggcatctta gcgtgtctga ccttccagag atccggtccc aatcgcactt      4080
     aactcataca gatgagaatt cattcattca taattattct aatttcaata aactcacgcg      4140
     tattgttgct tacatgttac gttttgttaa ctgctgtcga gaaaaacaaa ataattcaaa      4200
     taaaaacaaa aagttgtgcg tgggacaaat aaaaccttta aacactgttg agcttaacaa      4260
     tgcgagatat cagttggcga aaataattca acaacattca tttcctgatg agtatttatt      4320
     acttttaaat aataaaaaat tacctgtcgg gcataaatta aattcactta accctttttt      4380
     agatgaattt cagctcattc gtgtgggggg aaggttagcc aactcaccat acaattatga      4440
     taggaaattc ccaattttat tgcatacaaa tcattattta actaagatca tgtttcgtac      4500
     atatcacata acacttttac acgccggtcc tcaattatta ctagcacata ttcgtcaaat      4560
     gttttggcca atatctggtc gtaacttagc cagaaaaact actcaatcat gtcttaagtg      4620
     caagagatat caaggtaaga tagtgacacc tataatggga cagctgcctg aagaaagatt      4680
     gcacgcaaat ttcatattta gtaatgtggg cgtagactac gctggtccaa ttatgattag      4740
     taaccggaag ggacgtggaa gtgtattaat caaatcctac atctgcattt tcgtgtgctt      4800
     cgcagtgaag gcagtgcatt tggagttggt cacagacctg acaaccgtat cttacttagc      4860
     agcattgaat cgatttatag ctcgcagggg aaaacccaat aatatttact cagataatgg      4920
     cacaaatttt gtaggagcgg cgcgtgtcat tactaatttt ctcaaactac atagcgaatc      4980
     tatatatagc cgtgctgcag agcaaggcat atcatttcat ttcattcccc cctatacacc      5040
     tcactttgga ggcttatggg aaagtacagt caaatcagtt aaatttcacc ttaaaagagt      5100
     tttaggctta gcacatctca cttacgaaga gatgtatact ttacttgtcc aaatagaagg      5160
     actacttaat tcaaggcctt taacgtcctt atcttccgat ccatcagatc tctcagccct      5220
     aactcccttt cactttttga ttggtcgaac tctcactgtt ttacctcacc cacagatgtc      5280
     cgactgcgac cctgctcggc tgccgcggca ccagagagtc gaactgctgc gccaacactt      5340
     ttggaagcgc tttaatagag aatatatttc tcagttacac cagcggacga gatggcaacg      5400
     tcaaaaggga gagatagcgg aaggcaccct ggtcatcgtg aaggacgaag ccttacctgc      5460
     agcggagtgg ccccttggac gtattttgaa aatctatcct ggacccgacg gagtggcgcg      5520
     cgtagcagat ataaaaatca acaagggaac gataagaaga ggctttaaca aaatttgtcc      5580
     tctactcgaa gaagacgaac gacaaaacta ataatcatca tcaatatcat catacatcat      5640
     cttcccaatg cggccccggg agca                                             5664
//
ID   BEL-7_SpEx-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-227
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6878-6878 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 227 BP; 53 A; 65 C; 58 G; 51 T; 0 other;
     tgttcacgca tacctacatg aacaccaggc gacggcggcg gcagcggcgg ggaagtggga        60
     gcggcgggcc gcgcgacggt gtcccgtcgc tgcggcggcg ctcgacgacc agagcattct       120
     aaaccattgt cgcgcaaaca tcttaaaacc tgtactattc attattttaa ttcgcattat       180
     aacgaatacc tagcaaaagt ctgctttcat tctccctggc ctatcta                     227
//
ID   BEL-7_TrNi-I repbase;    DNA;    INV; 5682 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5682
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1032-1032 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..5680
FT                 /product="BEL-7_TrNi-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, integrase, and DUF5641."
FT                 /translation="MPVTRSQKDVPLRPPSRPLDAAAPTSGPEGATSATAP
FT                 AKAPSSEATTSSGTTATEYTTTTEATMETATTAASEKSKAAKKANKKTPEE
FT                 ALGKGLPGSSATLKPMGVGRRARSTKTTSSSARRKELAAREELARLELEQA
FT                 QAAARLARIRLELTQCEDEDSMEEDEDLEEERTAHVKNWIETSVLHETTKT
FT                 ADVDPGQRPAEDQKVKPEEEASAGGAFNGIQALTAALKEAFSSREGATGQP
FT                 KYIHELPYFDGNSSEWMAFKVVYEDTAHMFSNVQNMARLRRALKGNAREAI
FT                 RSLLYSEASAEEVMQALKRRFGRPDALILAELEKVKTLARISENPREICVF
FT                 ASQVNNSVAAIKGLKKPQYLHSPEIVKCIVEKLPTVLKFRWYDYTAATDDG
FT                 EFSDLNLISRFLNQEADKCGAFAALEERNRKTIKHASHVTRDSQEREPRQA
FT                 ERKCPMCEGEHVLLECRKFQKSSVQDRWAAVKKSRVCFKCLQGRHRKEMCR
FT                 KPPCKTCKRWHHHLLHAEAQEEASSSKDATEAAAVMAAVNTVSSTRAYLKM
FT                 VPVEVYGTKGSKKILALMDEGSTVTLLDQKVAEEVGAHGRREELTIETVGG
FT                 RLIQKKDSQLLDLAVKGVHQGAKKILRGVRTMEGLKLAPQFLEKGRIERCK
FT                 HLTKLSDALYYEGERPQLLIGQDNWELIVSREVRKGKPGEPVASRTGLGWV
FT                 LHGTDSGAIKRVQFINTCLTVSSPEEEMHQVIKDHFAIEALGVQPRRPSTD
FT                 AEGQAIAILEKTCRRLEDGRFEAGLLWRNPEERMPDSYTSAKNRLANIEKK
FT                 IDKDPQLKEEYGRQMEHLLDSGYAEEAPAQPEDTKKKWYLPHFAVVHPLKK
FT                 KIRIVFDAAAKSGGKSLNDALLPGPDLLQSLFGVLLRFRQGPLAVAADIKE
FT                 MFLQVRIRPEDRDSLRFLWRGDRRDVSPKEYRMTSVIFGATSSPSTAIYVK
FT                 NRNAADFQEEYPEAARAIELNHYMDDYLHSFHTEEDLRRVTAQVDFIHKKA
FT                 GFELRGWASNQPELLHRVRTEMTEKVEVNLGEKEEKTLGLRWFTEKDSIGF
FT                 RANLRNTPEEIARGFKVPTKREVTSAVMSTFDPLGLASPVLIQGKKLLQNI
FT                 WRSGIGWDEEIADQDHETWKVYLEKMKLLQGLQIPRCLAPRSTEGELHTFT
FT                 DASETAYAAAVYWRAQESDGTYLVNLVAAKVRVTPLKPVSVPRLELQAALL
FT                 GSRLAHAVEEEMDLKASKKTFWTDSSIVLSWIKTDPRTFKTFVAHRLAEIE
FT                 DLTKPQDWRWVPTAHNPADDATRDVPDNFDNKHRWYTGPDFLRQEEAHWPA
FT                 ARTFRKETTGEEKSTDVVATASVVSRTPKPERFSSWKRLQRATARVLQFIQ
FT                 LCRPIGRVNACKTDPTWRVIKKKAPGVGRRPTSSKEERRYIPLSPELLEQA
FT                 EKLLLRESQERSFHEEIRHLQKGKQLEGNSKLKRLDVVLDEDLLRVKGRID
FT                 AIQGVSRNFIRPIVLDSKDLIGRLILEDYHRRFNHGNHATVMNEVRQRYWV
FT                 LGLRSALKTVQHQCQWCRARRGKPGELPTGNLPVERLTHSCPPFTCTGVDY
FT                 FGPLSVTVARHHEKRWGALFTCLTTRAVHIELVPSLSTDSMMMALRRFAAR
FT                 RGMPKTIYSDNGTNFVGANRELQEALQGMNKEDLTSEAEKIDIQWKFIPPG
FT                 APNMGGAWERLVRSIKTALDATLHERHPREEVLLTLLLEAEHTVNSRPLTH
FT                 LSENPEEEALTPNHFLLGRSCGTARLGHFGDNELVGRHTWKATQRLADHFW
FT                 QRWLREYLPTLLPRKTRGGTSPTDLRVGDIVLIVDHTLPRDTWPRGRIVQV
FT                 YPGPDGRTRIVDIGTRGGVLRRPSSRVVLLVPGESPSQEDGATHEGE"
XX
SQ   Sequence 5682 BP; 1536 A; 1481 C; 1754 G; 911 T; 0 other;
     gttggtcctt cgagccggat ccctcgaaac ctaagaagag gttgcaagaa gaaagaagat        60
     tgaagactgc aagatgccgg tgaccaggtc acagaaggat gttcccttgc gccctccgtc       120
     ccgtcctttg gacgcggcgg ctccaacgtc agggccagaa ggggccacgt ctgcgacagc       180
     accagctaag gcgccttcat cagaagcaac tacttcttct ggaacaacag caacggagta       240
     cactaccacc accgaagcga ccatggagac tgcgaccacg gcggcatcag agaagagcaa       300
     ggccgcgaag aaggcgaaca agaagacccc agaagaggcc ctggggaagg ggttgccggg       360
     ttcctccgca actctgaaac caatgggggt cggtcgccga gccaggtcta cgaagacgac       420
     gagttcctcg gccagaagaa aggagctagc agccagggaa gaactggcac gcctggagct       480
     ggagcaggct caggcggcgg caagattagc acgcatccgc ttggagctga cgcagtgcga       540
     ggacgaggac tccatggaag aagatgaaga cctggaagaa gaaaggacag cccacgtcaa       600
     gaactggatc gagacgtcgg tgctacatga aaccaccaag acagcggatg tggacccagg       660
     acagcgacca gcagaagatc agaaggtgaa gccagaagaa gaggcttctg caggaggtgc       720
     tttcaacggg atccaggcgc tgactgctgc tctcaaggaa gccttctcaa gccgagaagg       780
     tgcgacgggg cagccgaagt atatccacga gttaccgtac ttcgacggca acagcagcga       840
     gtggatggcc ttcaaggtgg tctacgagga cacagctcac atgttcagca acgtccagaa       900
     tatggcgcga ctaagaagag cgctgaaggg caacgccaga gaagctatca gaagtcttct       960
     gtactcggag gcatctgcag aagaggtcat gcaggcgttg aagaggaggt tcgggagacc      1020
     ggatgccttg atcctggcgg agctggagaa ggtgaagacc ctggcgcgga tatcggaaaa      1080
     ccccagggaa atctgcgtgt tcgccagtca agtaaacaac agcgtggcgg ccatcaaggg      1140
     actcaagaag ccgcagtacc tgcactcacc ggagatcgtg aagtgtattg ttgagaagct      1200
     accaacagta ctcaagttcc ggtggtacga ctacactgca gccacggatg atggtgagtt      1260
     ttcggacttg aatctcatca gcaggttcct gaaccaggag gccgacaagt gtggagcctt      1320
     cgccgcgctg gaagaaagaa acaggaagac aatcaagcac gcctcacacg tcacgcggga      1380
     ctcgcaggag cgggagccca ggcaggctga aagaaagtgt ccgatgtgtg agggcgaaca      1440
     tgtgctgctg gagtgccgca agtttcagaa gagttcagtg caagaccgat gggcggccgt      1500
     gaagaagagc agggtgtgct tcaaatgtct acagggaagg cacagaaagg agatgtgtcg      1560
     taagcctccg tgcaagacct gcaagcggtg gcaccatcac ctgcttcatg cggaagcaca      1620
     agaagaagct tcaagtagca aggacgctac tgaggcagca gcggtcatgg cggccgtgaa      1680
     cacggtgagc agcacacgag cctacctgaa gatggtgcca gtagaggtct acggtaccaa      1740
     gggctccaaa aagatcctgg ccctcatgga tgaggggtcg acggtgacgc tgctggatca      1800
     gaaggtcgcc gaagaggttg gcgctcatgg cagaagggag gagctgacga tcgagacagt      1860
     tggcggcagg ctcatccaga agaaggactc acagctgctg gacctggctg tgaaaggcgt      1920
     acaccaaggg gccaagaaga tcttgagagg agtccggacc atggaaggac tcaagctggc      1980
     gccacagttc ctagaaaagg gaagaattga gcgctgcaag cacctgacga agctctccga      2040
     cgccctatac tacgagggag agcgaccgca actactcatc gggcaagaca actgggagct      2100
     gatcgtatcc cgggaagtaa gaaaagggaa gccaggtgaa ccggttgcct ccaggacagg      2160
     actcggctgg gtgttgcacg gtaccgacag tggtgcaata aaaagggtgc agtttattaa      2220
     cacttgcctt actgtcagct caccagaaga agagatgcac caggtcatca aggatcactt      2280
     cgcgatcgag gcgcttggtg tgcagccacg cagaccctca acggacgccg agggacaggc      2340
     catcgccatc ctagagaaga cctgcagaag attggaagac gggcgcttcg aggccggtct      2400
     gctgtggagg aacccagaag aaaggatgcc agacagttat acttctgcaa aaaaccgtct      2460
     ggccaacatt gaaaagaaga tagacaagga ccctcagctg aaggaggaat acggtcggca      2520
     gatggaacat cttctggaca gcgggtatgc agaagaggct ccagcgcaac cagaagacac      2580
     caagaagaaa tggtacctgc cacacttcgc cgtcgtgcat cctttgaaga agaagattag      2640
     gatcgtgttc gacgcggcag cgaagtccgg aggaaagagc ctcaacgatg ccctgctgcc      2700
     agggccagac ctgctgcagt cactcttcgg cgttctgctg aggttccggc agggaccctt      2760
     ggcggttgca gcagacataa aggaaatgtt tctgcaggtg cgaataaggc cagaagatcg      2820
     agacagcctg cggttcctgt ggcgaggaga tcgacgcgac gtgtcaccga aagagtacag      2880
     gatgacatca gtcattttcg gtgcgacttc atctccaagc acagccatct acgtgaagaa      2940
     cagaaacgca gctgacttcc aagaagagta tccagaagca gcaagggcga tcgagctgaa      3000
     tcactacatg gacgactacc tgcacagctt ccacacagaa gaggacctaa gaagggtgac      3060
     agcacaggta gatttcatcc acaagaaggc gggcttcgaa ctcaggggat gggcgtccaa      3120
     ccaacctgag ctgctgcacc gagtcaggac cgagatgaca gagaaggtcg aggtcaacct      3180
     cggggagaag gaagagaaga ccctaggact acgctggttc acagagaagg actccatcgg      3240
     attcagggcg aaccttcgga acacgccgga ggagatagcg agaggtttca aggtgccaac      3300
     gaaaagggaa gttaccagtg cggtcatgtc taccttcgac ccgctgggac tggcatcacc      3360
     ggtcctgatt caaggtaaga agttactgca gaacatctgg cgcagtggca tcggctggga      3420
     cgaagagatc gcagaccagg atcacgaaac ttggaaggtc tacctggaga agatgaagct      3480
     cctgcagggc cttcagatcc cgagatgtct ggctccacgt agcaccgagg gggagctgca      3540
     caccttcacg gatgcgagtg aaacggcgta tgcagctgca gtctactgga gagcgcaaga      3600
     aagtgacggg acctacctcg tcaatctggt ggcagcgaag gtgagagtca caccgttgaa      3660
     acctgtgtca gttcccagac ttgagctgca agctgccctc ctcggaagcc ggctggcgca      3720
     cgctgtagaa gaggaaatgg acctgaaggc gagcaagaag accttctgga cggactccag      3780
     catcgtgctc tcctggatca agacggaccc gaggaccttc aagacgttcg tggctcaccg      3840
     actagcagaa attgaagacc tcaccaagcc acaggactgg agatgggtgc ctacggcgca      3900
     caaccctgcg gacgacgcga cgcgtgacgt gccggacaac ttcgacaaca agcatcgctg      3960
     gtacaccggg cctgacttcc tgcgacaaga agaagctcat tggccagcag cgaggacctt      4020
     caggaaggag accacgggcg aagaaaagtc gacggacgtc gtggctacag cgagcgtcgt      4080
     cagccggact ccaaagccag aaagattctc gtcatggaag agacttcagc gggcaacggc      4140
     gagggtgctg caattcattc aactctgccg tcccataggc cgggtcaacg catgcaagac      4200
     cgacccgaca tggcgggtca tcaagaagaa ggcgccggga gtgggaaggc gaccgacgtc      4260
     ctcgaaggaa gaaagaagat acatacccct cagtccggag ctgctggagc aggccgagaa      4320
     gttgttgctg agggagagtc aagagagaag cttccacgaa gaaatacgac acttgcagaa      4380
     ggggaagcaa ctcgagggca acagcaagtt gaaacgactc gacgtggtat tagatgaaga      4440
     cctgctgcga gttaaaggaa gaatcgacgc gattcagggc gtctcgagga atttcatacg      4500
     gcccatcgtg ctcgacagta aagacctgat tggaagactt atcttggaag actaccaccg      4560
     tcgcttcaat catgggaacc acgccacggt gatgaacgag gtccgtcaac gatattgggt      4620
     gctggggcta cgctcagcat tgaagactgt ccagcatcaa tgtcaatggt gcagagcaag      4680
     aagagggaag cctggagagc tgccgacggg gaacctgccc gtcgaacgtc tgacgcacag      4740
     ttgtccaccc tttacatgca ctggcgtcga ctacttcggg ccgctctccg tcacggtggc      4800
     aagacaccac gagaagagat ggggcgctct gttcacgtgc cttacgacgc gagcggtgca      4860
     catcgagctg gttccgtcac tgtcaaccga cagtatgatg atggctctcc ggaggttcgc      4920
     tgcaagaaga ggaatgccga agactatata ctcggacaac gggaccaact tcgtcggcgc      4980
     caaccgtgaa cttcaggagg cgctgcaggg aatgaacaaa gaagacctaa cttctgaagc      5040
     cgagaagatc gacatacaat ggaagttcat cccacctggc gcgccaaaca tgggcggcgc      5100
     ttgggaacgt ctggtgcgct ccataaaaac cgcactggac gccactctac acgaaagaca      5160
     tccacgagag gaggtccttc tcaccctcct gctggaagct gaacacacgg tgaattcacg      5220
     accgctgact cacctctccg agaatcccga ggaggaagcg ctcactccaa accacttcct      5280
     ccttggacgc tcctgcggca ctgcgagact cggccacttc ggcgacaacg agctggtggg      5340
     acgacacacc tggaaggcga cgcagcggct tgccgatcac ttttggcaac gctggctgcg      5400
     cgagtacctg ccgaccctgc tgccaaggaa gactcgaggt ggaacctcgc ccaccgacct      5460
     gagggtcggc gacatcgtgc tgatcgtcga ccacacccta ccaagggaca cctggccccg      5520
     tggaagaatc gtgcaagtgt atccaggccc agatggaaga accaggatcg tcgacatcgg      5580
     gaccagaggc ggcgtgctgc ggagacccag ttcgcgagtg gtgctgctgg tgccgggaga      5640
     atcgccgagc caggaggatg gtgcgacgca cgagggggag aa                         5682
//
ID   BEL-7_TrNi-LTR repbase;    DNA;    INV; 1169 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-7_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-1169
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1042-1042 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1169 BP; 345 A; 222 C; 267 G; 335 T; 0 other;
     tgtcggcgac taaaagtaag gtgccgcgct atcgccggca aatggtgtgg ggtaccgcgc        60
     acatagcggt ccgcctcaca cacatttttc attagaaata agatatttgc atttttgttt       120
     atttgttgta atttacgttg gttaggttaa gttgttatta gttataatag tatcaacaac       180
     ccaaagtaag gcgccgcgct gccgccggca aagaaaggtg tggggtaccg cgcacatcgc       240
     ggcccgcccc acagacatat agtgaattag aaataggatt ttacatattt ttattattgt       300
     ttatatttct aattgttgtt atttacgtta tcatagacta ttgtcacatt tgtgtccatt       360
     tgtaaagtta ttaagtgtaa aattgctgaa ctatgaaagt taatggttac gtaataagaa       420
     ttgtaaaatt gactttttta ctttaagttg tttttaaatg taagggtgaa tatcttattg       480
     gaaatcgccc agaaacgcca aatccgttgg aattttgaag atcggccgtc ggagtaaaaa       540
     gttatgaaca aatgtgtaaa tgactccaat aagacggccg gtatattggt gtttctgggt       600
     cgataattaa taaatacaat taagtacgta tcttgtaagg tgttatttag ataagaataa       660
     caaatattat atcataataa aacataaaaa ggtgtattta atgtaaaatg gatgaataaa       720
     tacaaggtaa aggggttcgc caaagtgaaa attaactcca atacgagtct tattggagtg       780
     gcgcacgcgg cggtaaagtc tcgttgtata aaagcagcgg ggctttccgt cgtgagtcag       840
     tcgcagctca gcttcagtac gagacacact agacatctac gaagagaaat tggcgaacct       900
     ccgatccgtt gattagaaga tttactccgt gttttcttca ataatcctct agtagagacg       960
     tggggtgtgt gacgtcgcat cctcggtacc tcggtaccat cttcaatagg tttccatcaa      1020
     cgacgcacag aggggtgcgt ggggtacgtg tgcaccagcg caagcaacac acgtaccaaa      1080
     cactgtggga caccgtcccc gggcagtcga ccgccgcgac cgtagtctaa cagctacctc      1140
     gtggccattg gtcgaccgcg cccacaaca                                        1169
//
ID   BEL-800_AA-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-800_;
KW   BEL-800_AA-I; BEL-800_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5986
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 261-261 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..5983
FT                 /product="BEL-800_AA-I_1p"
FT                 /translation="MQRSSQGHDESSLEQSCLMCGQPDTSQMVSCDECHRW
FT                 YHFACVGVTEAIADYDWSCQRCHDARISRPVGTTPLAPPTSHVTPPTVTGM
FT                 LPAVTSVTQNTSGESSVHYSAPISALTMHQPLLQPSSSNSVYDSTRTYTSY
FT                 ISIPLTDPVITTAPSTIPAYATSIPYAQPVHPTSSTSVSAEAARQSLVSQL
FT                 PAELRLRFLEEEQALEMKHLVERYQLLMDRNPVSATNNISSVPYHENTTNS
FT                 AAQCHLFSAHQPRMTTVGVPPTSILPNPQYHSSPVQNPGCSHRPLRGDICF
FT                 ATQPSPVHNRPNQDFPHAIPLQASGVGNESVVLNRSQIAARQAVSKDLPEY
FT                 NGDPEQWPLFFGTFESSTRICGYTPEENMMRLQKCLKGKALEAVRCQLLHP
FT                 ANLESVMATLKMLFGRPEIIVHSLIQKIHALPAPKSDRLSTLIDFAIAVRN
FT                 MVATVQNCNLDEHLCNISLLQSLVDRLPPMIRLNWATHRQGLFRVTLTEFS
FT                 TWLYTLAEAASTVTIPQIQVEPEKSRRVRKDDAFLNAHSETVIKPSNYEAN
FT                 TIASSSKCIICQGACENVEECKHFLILDHPSRWNLLREYKLCRCCLAKHQG
FT                 PCRVTKVCGKHGCTFKHHRLLHNDSKDKRPATTSAISAVSSPEASNTIGNQ
FT                 NDARHTCNTHRGDNKTVLFQYIPVTLRNQDVKIRTYAFLDLGSSVTLLEES
FT                 LASKLQLKGQSHPLCLRWTGDACRYEDSATIVALDISGSFDEERTHRLSEV
FT                 YTVKELKLPSQTLSFEELSKKHDHLRGLPIDSYSNVQPRILIGMNNARIVN
FT                 PMESREGEEHDPIAARTRLGWMVFGTCSAGGQATSTTIPHSFHVCHHITEA
FT                 DVELNSVVKDYFALEGLGVSKPERLLLSKEDEYAAEKMRSVTKFENGRYCT
FT                 GLLWKYDNIRLPDNKSMALRRHNCLMKRMQRDPKLSETLKAKMEEYVLKGY
FT                 VRKLSPEELRKPMDRIWYLPMFPVYNPNKPNKIRIVWDAAATIRETSLNSV
FT                 LMKGPDQLTPLPFVLYRFREKRIAISGDIAEMFLRVQMNEDDQQCQRILWC
FT                 EADGTVGEYVVTVMTFGAKCSPSCAQFIVRENAARFRTEYPEAVEVIEKGH
FT                 YVDDMLASVDTEEEAIQLAKNVHHIHQQGGFTMRNWISNSRLVIQALGSTE
FT                 MTEKSIDGNNDTVLEKVLGLWWDTETDTFRYKLSTERNQQLLTGQKHPTKR
FT                 DILRVMMSVYDPLGLLSNYMVLLKLLFQEIWREGVSWDDEIGERQVEKWNN
FT                 WLLLLPEAESIRIPRCYHLSASKGTQRTVELHTFADASELGYAAVCYFRFT
FT                 EGEQISCSLVGAKSRVAPLKFVSIPRLELQAAVIGSRLAKSIELGHSIKIS
FT                 RRYFWTDARDVMCWLKSDHRKYSQFVAFRVGEILDETDLSEWQWLSGKFNV
FT                 ADEATKWNDQIRFDASSRWFSGPPFLSKPKEDWPITSFNQETVEEIRTHLL
FT                 HHSIQEGGDILRAEDYSSWIHLRRISALVLRFSANIKHKRNAEPALLGPLT
FT                 TEELQAAETYLYKRTQKECYGHEIAVLSEDQKKPALPKTSALYKLSPSLDT
FT                 VGVMRIHSRIDVSDFAGENTQFPIVLPRSHPLTKLVLQDIHEKYHHQCNET
FT                 FVNEARKKFYIPKLRVECNRVRRECQRCKIRLAKPCPPMMANLPKERLAAY
FT                 VRPFSYSGVDYFGPYQVVVGRRLEKRWGVLVTCLTTRAIIIEIAHSLSTDS
FT                 CIMALQNCFARRGTPIQIISDRGTNFVGASKELKDALALVDSSKLISEFTT
FT                 PSTSWKFNPPVCPHMGGAWERMIQIIKKILMEIKPKRSPTDEVLRNMMIKV
FT                 ENIVNSRPLTHVPVDDESSSALTPNHFLVGSSNGSKPLVPYQDCATVMRQS
FT                 WKTSEILANYFWKRWVHDYTPEIARRSKWYSPSKPIAVGDIVVIVDSTFPR
FT                 NCWPKGRVISVKTSLDGQVRSAVIQTAGGVYERPATKLAVLDIRTNMSSMD
FT                 QRPSTGG"
XX
SQ   Sequence 5986 BP; 1757 A; 1375 C; 1399 G; 1455 T; 0 other;
     ctttaaaatt ctcgtttgcg ggtgaactgg atccacaatg cagcgatcat ctcaaggaca        60
     cgatgagagc agcttggagc agagctgcct gatgtgtggg caaccagaca ccagccaaat       120
     ggttagctgt gacgagtgcc ataggtggta ccattttgct tgtgtaggcg ttactgaagc       180
     tattgcggat tacgactgga gctgccaaag atgccatgac gccagaatct ctcgtccagt       240
     cggaaccacg cccttagccc cgccaacaag ccatgttaca ccaccaaccg tcactggaat       300
     gctgccagca gtaacgtcag tgacccaaaa cacatcagga gaatcaagtg tacactactc       360
     ggcaccgatc agtgctctaa caatgcatca acctcttttg cagccgtcgt cttcaaatag       420
     tgtatacgat tcaacgcgta cttatacaag ctatatatcg ataccgttga cggacccggt       480
     aatcacaact gccccgtcga caatacctgc atatgctaca tcaattccct atgcccaacc       540
     agtacaccct acatcttcta cttcggtatc agcagaagcc gctcgccaga gtcttgtatc       600
     gcagctaccc gccgaactgc gccttcgctt cctagaagaa gagcaagcac tcgaaatgaa       660
     gcatcttgtg gaacggtatc agttactaat ggatcgtaat cccgtttcgg caacaaacaa       720
     tatttcgtca gttccttatc atgagaacac gacgaattcg gcagcgcagt gtcatttatt       780
     ttcggctcat caaccacgga tgacaactgt aggcgtacca cccacttcaa tacttccgaa       840
     cccgcagtac cactcttctc cggtgcagaa tcctggatgc tcgcatagac cattgcgcgg       900
     cgacatttgt ttcgctaccc agccttcacc ggtacacaac cgcccgaacc aagatttccc       960
     acacgctatt ccattgcaag cgtcaggagt cggaaatgag tctgtggtgc tcaacaggag      1020
     tcaaatcgct gctcgtcaag ccgtgtctaa ggacctgcca gagtataacg gcgacccgga      1080
     acaatggcca ctattttttg gtacctttga gagttcaact cgtatatgtg ggtacactcc      1140
     ggaagaaaac atgatgcggt tgcagaaatg cttgaaaggg aaggctctcg aagcagtacg      1200
     ttgtcagctc ctgcatccag caaacctcga aagcgtaatg gccaccctca aaatgctctt      1260
     tggtcgaccg gaaatcattg ttcattctct cattcagaaa attcatgctc tacccgcacc      1320
     aaaatccgac agattgagca cattgattga ttttgctata gccgtgagga atatggtagc      1380
     gactgttcaa aactgcaatc tggatgaaca tttgtgcaat atctctcttc tacaaagcct      1440
     tgtagatcgc cttcctccta tgatccggtt gaattgggcg actcatcgtc agggattgtt      1500
     ccgcgttact ctaacggagt tcagcacgtg gctttacacg ctcgctgaag cagccagcac      1560
     ggttaccata ccacaaattc aagtggaacc tgagaaatca cgacgagtac ggaaggatga      1620
     cgcattctta aacgcgcata gtgagaccgt aataaaacca agcaactacg aagcaaatac      1680
     gatcgccagt tcgagtaaat gcatcatctg tcaaggagca tgcgaaaacg ttgaagaatg      1740
     taagcatttc ctgatactgg atcatccttc ccgatggaat ttactcagag agtacaaact      1800
     gtgtcgttgc tgtctcgcaa aacaccaggg accatgtaga gttactaagg tgtgtggtaa      1860
     acatggatgc actttcaagc atcacagact gctgcataat gactctaaag ataaacgacc      1920
     agcaacgact agtgcaatct cggccgtgag tagtcctgaa gctagcaaca ctataggcaa      1980
     ccagaatgat gctagacata cttgcaatac acatcgcggt gacaacaaaa ccgtactgtt      2040
     tcagtacatc ccagtcacac tccgtaatca agatgtaaag attcgaactt acgctttctt      2100
     agatctcgga tcatcggtaa cgctgctgga agagagtctt gcttcgaaat tgcaactaaa      2160
     aggacaaagc catccattat gccttcgatg gactggcgac gcttgtcgct atgaagattc      2220
     tgcaacaata gttgctttgg atatttccgg gtcattcgac gaagagagga cacaccggct      2280
     cagtgaagtt tatacagtta aagagctgaa gctacccagt cagacgttat cgtttgaaga      2340
     gctgtcgaag aaacatgatc atctacgagg attgccaata gattcgtact caaacgttca      2400
     accacgaatt ttgattggta tgaacaacgc tcgaattgta aatcccatgg aaagtcgaga      2460
     aggagaggaa cacgatccca tagcagccag gacgagatta ggatggatgg tatttggaac      2520
     gtgttccgca ggtggccaag caacatccac aactattccg catagctttc acgtgtgtca      2580
     tcacatcaca gaagcggatg tggaactcaa ttccgtagtt aaagattatt tcgcgctaga      2640
     aggccttggc gtatctaagc ctgaaaggct gctactatca aaagaagacg aatatgctgc      2700
     tgagaaaatg cgttcagtga caaaattcga aaatggtaga tactgtaccg gattgctatg      2760
     gaagtatgac aacatcagac ttcccgacaa caagtctatg gcactacgac gccacaactg      2820
     cttgatgaaa agaatgcaac gggatcctaa actgagtgaa acgttgaaag caaagatgga      2880
     ggaatacgtg ttgaaaggct acgttcgaaa actttccccg gaagaattaa ggaaacctat      2940
     ggaccgcatt tggtatttac caatgtttcc cgtgtataat cccaataaac cgaacaaaat      3000
     cagaattgtt tgggatgcgg ctgcgaccat aagggaaacc tctcttaact ctgttttaat      3060
     gaagggccca gatcagttaa caccgttgcc cttcgtgtta tacagatttc gtgaaaaacg      3120
     aatagctata tcaggggata tcgcggagat gtttcttcgc gttcaaatga atgaagatga      3180
     tcaacagtgc cagcgaattc tgtggtgtga ggcagatgga acggtcggag agtatgttgt      3240
     gacggtcatg acctttggcg ccaaatgctc accgagctgc gctcaattta tcgttagaga      3300
     aaacgccgca aggttcagaa cagaatatcc agaagcagta gaggttattg agaaaggcca      3360
     ttatgttgac gacatgctag cgagcgtgga cactgaagag gaggctatac aactcgccaa      3420
     gaatgttcac cacatacacc agcaaggggg atttacaatg agaaattgga tctcaaactc      3480
     aaggctcgtc attcaggcac taggcagtac ggaaatgacg gagaaaagca ttgatggaaa      3540
     caacgatact gtattagaaa aggttttggg tttgtggtgg gacaccgaga cggacacgtt      3600
     tcgctacaaa ctatcgacgg agcgaaatca gcaactgctt actggccaga agcatcctac      3660
     gaaacgtgac attttgcgtg tgatgatgtc agtgtatgac cctcttggac tgttatcgaa      3720
     ctatatggta ctgttgaagc tactctttca agaaatctgg cgggaaggcg tttcgtggga      3780
     cgatgaaatc ggcgagagac aggtggaaaa atggaacaac tggctgctgc tacttcctga      3840
     ggccgagtct attcgaattc ctcgatgtta tcacttgtcg gcttcgaaag ggacacaacg      3900
     aactgtggaa ctacatacgt ttgcagatgc cagcgaatta ggatatgccg cggtttgcta      3960
     ttttcgattc actgaaggtg aacaaatctc ttgctcgcta gtaggtgcaa aaagtcgagt      4020
     ggcacccctc aaatttgtgt caattccccg acttgagctc caggcagcgg taattggttc      4080
     aagactagcg aaaagcatcg aacttggtca ctccattaag atctcgcggc gatacttttg      4140
     gactgatgcc cgtgacgtta tgtgctggct aaagtcagac caccgaaagt attcgcagtt      4200
     cgtcgcattt cgagttggcg aaatattgga tgaaacagac ctgtctgaat ggcagtggtt      4260
     gtctgggaaa ttcaacgttg ccgatgaagc aacaaaatgg aacgatcaaa ttagattcga      4320
     tgcgagttca cgatggtttt ccggacctcc gttcttgtcg aagccaaaag aagactggcc      4380
     aattacgtca tttaatcaag aaaccgtgga agagataaga acgcatttat tgcatcatag      4440
     cattcaagaa ggtggtgata tcctgagagc cgaggactat tccagttgga tccatctccg      4500
     tagaatctca gctttggttc tacgattctc cgcaaatatc aagcacaaaa ggaacgctga      4560
     accagctctg ctaggaccac taaccaccga agaattacaa gcggctgaga catacctcta      4620
     caaacgcact caaaaggaat gttatggcca cgaaatagca gtattatcag aagatcagaa      4680
     gaaaccagct ttgccgaaaa caagcgcgtt gtataaatta agtccatctc ttgacaccgt      4740
     tggggtaatg cgtatacaca gtcggattga tgtgtctgat ttcgccggtg agaatacgca      4800
     atttcccatc gtattgcctc gtagtcatcc tctaactaag ttagtactgc aagatataca      4860
     tgaaaaatat catcatcaat gcaatgagac attcgtcaat gaagctcgaa agaagtttta      4920
     cataccaaaa ctacgcgttg aatgcaatag agttcgtcga gagtgtcagc gttgtaagat      4980
     ccgtctagcc aagccatgcc ctcctatgat ggcaaattta ccaaaggaac gattggcggc      5040
     gtacgttcga cccttctcgt actcaggcgt ggactatttc ggaccgtatc aagtggttgt      5100
     tggcagacgg ttggagaaac gctggggagt gctggtgacc tgtttaacta ccagggcaat      5160
     catcattgaa attgctcaca gtctatccac ggattcatgt attatggctc tccaaaactg      5220
     ttttgccaga cgaggaactc cgatacaaat aatcagcgat cgaggtacga atttcgttgg      5280
     cgcatcgaag gagctcaaag atgccttggc tcttgtcgat agttcaaaat taatctcaga      5340
     gttcacaacg ccttccacat cgtggaaatt taatccgcct gtgtgtcctc atatgggagg      5400
     agcctgggag cgcatgatac aaatcattaa aaagatattg atggagatta aaccaaaacg      5460
     ttcaccgact gacgaagtat taagaaacat gatgattaaa gtagaaaaca ttgtgaacag      5520
     tagacctctg acacatgttc ctgtcgacga tgagtcgtct tcagcattaa cgcctaatca      5580
     ctttctggtc ggctcttcta atggctcgaa gccactcgta ccgtatcaag actgcgcgac      5640
     ggtgatgaga cagtcctgga aaacatccga aatacttgcc aactacttct ggaagcgatg      5700
     ggtacacgac tatactccag aaattgctcg tcgttcgaag tggtacagcc caagtaagcc      5760
     aattgctgtt ggagacattg ttgtaattgt ggattctact tttccgagaa attgttggcc      5820
     aaaaggacga gtaatatccg tgaaaacctc attagatgga caagttcggt cggccgtaat      5880
     tcagaccgca ggtggagttt atgagaggcc tgcgaccaaa ctagcagtgt tggacatacg      5940
     tacaaacatg agtagcatgg accaacgccc aagtactggg ggggag                     5986
//
ID   BEL-800_AA-LTR repbase;    DNA;    INV; 687 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.01, Created)
DT   03-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-800_AA-I;
KW   BEL-800_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-687
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-687
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 110-110 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 687 BP; 237 A; 123 C; 128 G; 199 T; 0 other;
     tgttgcgtac accctacgcg agaactcaca cagtccaaca actcgttaac cgcagacccg        60
     taatcgatta ctttgcccga agatgtaaag gttgctgcga tcgttgacag ctgagtggga       120
     gcctgtcata tcgatacgag acaagaggag tgtagatgtc atagcaatag catgcgtgat       180
     gtgctctgga ttgaatttat tgaaatcgct aataattgtg aattaatagt aaatttgaac       240
     tcgctatcca tcagttaatc ccagtaaatt tgtagaaact agaataacgg ataggtgaga       300
     tattccaatt cgtataaacc ttaaacacga gtcactattg tctgatttta ggttagcctt       360
     gatcgtagat ttgtacggcc aatacgtgta tctaatagtg ctgataacgc ttaaaacggt       420
     actgagttta ttaatctatt acttgaatac ttataaccta atatcgacta tttactgtag       480
     ccattgaatt gaaattggaa gcacataaat tgaaatagat ccaaacccgt agatagctac       540
     aggaatctta caaacgtaag taacataaaa tttgtacaac taagcaatac ttataattga       600
     attaattaca ggagaatttt aatctccgaa gaataaatac gggattaaaa tcacggaatc       660
     gagtttcctt acacagctca agcaaca                                           687
//
ID   BEL-801_AA-I repbase;    DNA;    INV; 9352 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-801_;
KW   BEL-801_AA-I; BEL-801_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9352
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9352
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2178-2178 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1265..9031
FT                 /product="BEL-801_AA-I_1p"
FT                 /note="PHD finger, DUF1759, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MSSMFVDNQNGNCRLCNDPDDKDEYMVECSECDRWFH
FT                 PSCAKLTKKPTKEEIFLCAKCQLIDKEIKKLTLAARAVATSPTEAFFERML
FT                 NGQQRAVNEITKALTGLSIKRENEVQEDWTIYLKRQALIRLPKFGGAAKEW
FT                 PNFKRAYEQTTNEGAFNNIENLNRLQQVLYGAAVKSVRQLMMDANNVPEIM
FT                 ARLEEHFGRPEQVYKELLTELMRVRKDSRTAVIEMSTALENLVSNVKLLEK
FT                 DEYLSDHRLVEELVRKLPYNIQVKRTEYCMNNSQIAVQSLDDLNDWLRPFA
FT                 RTARAMTMHQPNIEHQRASINHHEQRTKETYRQGTCKVCKRPNAHKIWDCN
FT                 AFKKMKVDERQKTAQLERLCFSCLGTNHNMFKCSKAKRCDIKGCARRHHRM
FT                 LHPQTEEVTIEQQPVNNHEDNATPITVHYQVLPVTLRNKDKTVSTYAFLDP
FT                 GSSLTLLEADIARELKLVGKSIPLQLNWTQEVTTAHNSSQSVDVVIKGDTK
FT                 TSHVLRDVRTIKNLMLPKQSRNYQKLCERYPHLRGLPLNSFDTMRPGIMLG
FT                 LNHSHLITGLEHRFGDQGDPIAMKTKLGWVIYGKLTTNNEEGHAMVTHNED
FT                 TLRHIMDNYLSLEDFGVKPVKELPQAADEKRANEIILKTLRYDNEDGRYEV
FT                 GLLWKKDGHKFPSSMEVAKKRLVGLENKLKEDPPLQKWVMETIQNYVEKGY
FT                 ARKLAPAEMLKEKDNLYYLPHFVVVNKNKQPPKPRLVFDAAAKIQGQSFNS
FT                 ALLSGPDSTTSLFGILVRFREGRYAVCGDIKEMFHQVKVRKEDQDAQRFLW
FT                 RNCEQRFPDIYVMQVMTFGSTCSPSCAQAAKNHNAERLKEKYPLALSPIIN
FT                 QHYVDDYDDSFNSLEEAKDTVAQIIKAHDEGGFFITKFCSNDKMLLDSIPE
FT                 NRREMDTKKYLNDKEDEAEKILGVYWNTNKDTIGYQVNLEKLPKEVLCKIR
FT                 NPSKREVLSFVMSVFDPLGLISNVTIQGKILIQELHKETKDWDTPISERAQ
FT                 KIWNSWVEKVQTASNIRIPRWIMKDVGTHIELHTFVDASDKAFAAIVYARS
FT                 NTQQNPCVRIMAAKSRVAPIKPLSIPRLELQAALLGVRLADTVRQETRLKI
FT                 IGSTFWTDSKTVLSWINSEHRKYKPFIAHRIGEILDSTTMDQWRWVPTNEN
FT                 PADEGTKPCHKKSIWITGPEFLKLPTEKWPQTEIKETEVEAKFVGIHQTNK
FT                 DYIHENKFSNWWKLIFRLCAILKIIDFGLKRPCFTKSFTMRDRVRAENILY
FT                 RKAQGDVFPDEINDLTENGELTTIGPLSKLTPMLDENGVMRSRSRLEYADN
FT                 LPKAARIPIILPKDHHITQLIIKWYHEMFNHQADKSVLAALQQKYHITRLN
FT                 TAFQLVKSRCQHCMNAIIKPKIPIMAALPKCRTDTYVYPFNHTGVDYFGPF
FT                 EVAVNRSKEKRWGAIFTCMTTRAVHIELASKLDTDAFLLCFMNFQNRRGKV
FT                 SHLYSDNGTNFIGAERELRSLVDQINSKMEAGQAIKLELEWHFNPPKAPHF
FT                 GGAWERLIRIVKNSLMETITSRKDHSAPNVEILRGALIQAEFYLNSRPLTH
FT                 IPLECEDDEVLTPFHILIGRAGSLSVPSMFESHKLERKHWRLAQYYGKYFW
FT                 DRWRKEYLPIIAQRPKWQTKTKPIQVNDIVVIVDAEAKRNQWLKGRVIEVK
FT                 ESKDKQVRSLKITTKFGIYHRAASSVAVLDVYRKGDESNTDDENKKIGEVK
FT                 SLITADKNTNNIKKRAVVNDECVLATSSQPVKKTKATADKCNEAATSRSGD
FT                 EAAVAITAAANECSEATSSSSIEGAAAAVATIDGCSEATSSSSIGGAAAAV
FT                 ATIDERIEAASSKVTTAAALEHELNEISTKEKSICKNHDPAILTSFNKHLR
FT                 ERRRNKRRIKPPTWHLNEEGLTATTRYVTASSKDLITRELKENNNPAKKAR
FT                 VINANMWTLTVIALFLLISQALGSELKGLIAYDCTSNNVNITSYSLMDVAS
FT                 CIPPTRNLTTTEVRIQVLQRSPKAFVKVHQCKVIIKRSIRHCGALSHTSDY
FT                 EHGYAYIVKEFTPDECRLAQLLGSVSLSESNKIRELRRNSTTRGETLIVGS
FT                 LKGSSCSGGVYRTASYTWEGALVFYEYEISMYDYTATADIENDQVALRNGI
FT                 VCAYKTGWCLDPEFGYMTWEVDLRRQCEETEFEIIYEGTVNKTFDHDNDKS
FT                 RSKAVYTLLSDTHMFSIRARDKTQICGFDAYVTDHPRIYIIEASGFKSPFK
FT                 RKESTGRNLDLFTYFNSKITLVENYLGQQLNEVYTTVMTEMCKIDKALMET
FT                 KLTLARVNPSEFVSNIVKRSGFTAIVAAEVLYIIECKPVFVTYESKQECYQ
FT                 EIPVKYNNVSMYMAPVTRILQRRGTEIDCTPLIPAKFTIGGRWYTTDQRLR
FT                 ESTPPNKLTTDVITSWSYTSLPSLMQSGVYDAESLERMKNMVYEQGDKKIA
FT                 SSVLHKAISGQHPNLQGYTFDALISERIVDNAFNKYWSKLISWSTWLGNVT
FT                 STALGIYMITRMIKFAVDTLIHGRILYDIYGFGWQLLASFWDSLTTLLSHR
FT                 NVMKRYQDKNDLTECTTLAPQPTDKQDDHHEEESNNESRPRPYPRPSNIVT
FT                 SK"
XX
SQ   Sequence 9352 BP; 3308 A; 2132 C; 2144 G; 1768 T; 0 other;
     tggtgccccg agtgaggaac cacaacgtcg cgcgttttcg ttgcggttaa aagcaaggtg        60
     tggttaccgc ctaaagagta accagaagaa aattcctgta gtgtttagtt gagtgaaatg       120
     tcagatctca cgcgagagat cgaagagctc gtcgaatact tccgcgagat tgatgcgaag       180
     ttcgacgaag tgaaaaacac cgacaattac aagcagtggg ccgaaaggcc agtggctaaa       240
     caagaactgt gcgaaacagg gtcctttgaa ctagttctct gggaaaacac acctagggaa       300
     aaggtgtttg tacaacgagt ttcgaaatcg gtggaaggaa tggtcaggcc taaacgacca       360
     taagaagatt cgcagaagaa aagtgttgga aagtgttctg ttgaaatacg cgctcaacgc       420
     tgagtcatca atttaaaata atcgctgttg cgatactgag aaaggtgtca caacgtgcac       480
     gatccttgcg aggacgtgct agagaaccgg taagtaggcg tcgaatcgac cgttggaaac       540
     cccaggaaga ggacaacggg cacgatcctt gcgaggacgt gctagagagc cggaaggcgt       600
     cgaatcgacc gttggaaacc ccaggaagag gacaacgggc acgatccttg cgaggacgtg       660
     ctagagagcc ggccggaagg cgtcgaatcg accgttggaa accccaggaa gaggacaacg       720
     ggcacgatcc ttgcgaggac gtgctagaga gccggaaggc gtcgaatcga ccgttggaaa       780
     ccccaggaag aggacaacgg gcacgatcct tgcgaggacg tgctagagag ccggaaggcg       840
     tcgaatcgac cgttggaaac cccaggaaga ggacaacggg cacgatcctt gcgaggacgt       900
     gctagagaac cggtaagaag gcgtcgaatc gaccgttgga aaccccagga agaggacaac       960
     gggcacgatc cttgcgagga cgtgctagag agccggaaga ggcgtcgaat cgaccgttgg      1020
     aaaccccagg aagaggacaa cgggcacgat ccttgcgagg acgtgctaga gagccggaag      1080
     gcgtcgaatc gaccattgga aaccccagga agaggacaac gggcacgatc cttgcgagga      1140
     cgtgctagag aaccgaaaag aaggcggtcg aattaaccac tttaaacctc accagaggac      1200
     taaaacgcga accagcaaaa atcgaacgaa tccggaattc tagagagaag ccacaaggaa      1260
     caaaatgtct agcatgtttg tggataacca aaacggcaac tgccgccttt gtaacgaccc      1320
     cgacgataaa gacgaataca tggtggagtg ctcagaatgc gatcgttggt tccacccatc      1380
     gtgcgcaaaa cttaccaaga agccaacgaa agaagagatt ttcctttgtg ctaagtgcca      1440
     gctaattgac aaggaaatca aaaaattaac cttagcggca agagcagttg ctacgagtcc      1500
     tacggaagcc ttcttcgaga gaatgttgaa cgggcaacaa agagcagtaa atgaaatcac      1560
     gaaggctctg acaggactca gcattaaaag ggaaaacgaa gtccaagagg attggacaat      1620
     ctatttgaag cggcaagcac taatacgact cccaaagttc gggggagcag caaaggaatg      1680
     gcctaacttt aaaagggcct acgaacagac aacgaacgaa ggagcattca ataatattga      1740
     aaacttaaac cggttgcagc aggtgcttta cggagcggcc gtaaagagcg tacgacaatt      1800
     aatgatggac gcgaataacg tgccggagat tatggctcga ctcgaggagc atttcggaag      1860
     accggaacaa gtgtacaagg aattgctaac cgagcttatg agagtcagga aagattcaag      1920
     aactgccgta atcgagatgt cgacagccct tgaaaatctc gtaagcaatg tgaagctact      1980
     cgaaaaagac gagtacttat cggatcatag actagtagag gaactagtaa gaaaacttcc      2040
     atacaacatt caagtcaaga gaaccgaata ctgcatgaat aactctcaga tagcagttca      2100
     atcattagac gacttgaacg actggctaag accattcgcg agaacggcaa gggcgatgac      2160
     gatgcatcaa ccgaacatcg aacatcaaag ggcgtcgatc aatcatcacg agcaacgaac      2220
     caaggaaacc tacagacaag gaacgtgcaa ggtatgtaaa cgacctaatg cacataagat      2280
     ctgggactgt aatgccttca agaagatgaa ggtagacgag aggcaaaaaa cagcccaact      2340
     ggaacgccta tgcttcagtt gcctaggcac gaatcataac atgtttaaat gttctaaagc      2400
     caagagatgc gacatcaaag ggtgtgcaag aagacatcac cgaatgctcc atcctcaaac      2460
     ggaagaagtc acgattgaac aacaacccgt gaataatcat gaagataacg cgacaccgat      2520
     aacggtacat taccaggtat tacccgtaac attacgaaac aaagataaaa ccgtaagtac      2580
     ttacgccttc ctagaccccg gctcgtcact gactctatta gaagcggata tcgctagaga      2640
     actgaagtta gtcgggaagt caatacctct tcaacttaat tggacacaag aggtcactac      2700
     agcgcataac tccagtcaaa gcgtcgacgt agttataaaa ggagatacaa aaaccagcca      2760
     tgtgctgaga gacgttagaa caattaaaaa cttaatgcta ccaaaacaat cgagaaatta      2820
     tcaaaaatta tgcgaacgct atcctcactt aagaggacta ccgttaaaca gtttcgatac      2880
     aatgagacca ggaataatgc taggactaaa tcacagtcat ttgattacag gattagagca      2940
     tcgattcgga gaccaaggag acccaatcgc catgaagacg aagctaggat gggtaatcta      3000
     cgggaaacta accactaaca acgaagaagg tcacgccatg gttacccata acgaagacac      3060
     cttacggcac atcatggaca actacctttc tctggaagac ttcggagtca agccagtaaa      3120
     agagttacct caggccgcgg atgagaaaag agcgaacgaa atcatcctta agacgctacg      3180
     ctatgacaac gaagacggac gttacgaggt aggtctgctg tggaaaaagg acggtcataa      3240
     attcccatcc agcatggaag tggcaaaaaa gagattagtc ggtctcgaaa ataaactaaa      3300
     agaggaccca cccctacaga agtgggtcat ggaaacaatt caaaactacg tcgaaaaagg      3360
     ctacgccaga aaacttgcac cagccgaaat gttaaaggag aaagataacc tgtactattt      3420
     accgcacttc gtcgtggtta acaaaaataa acagccgccg aaaccaagat tagttttcga      3480
     cgcggcagcc aagatacagg gtcaatcgtt caactcggcc ttgctatcgg gaccagactc      3540
     cactacgtca ctattcggaa tactagttcg attccgggaa ggaagatatg cggtatgtgg      3600
     cgacataaaa gagatgttcc accaagtaaa ggtacgaaaa gaagaccagg acgcgcaacg      3660
     attcttatgg cgcaactgcg aacagaggtt cccggacata tacgtcatgc aagtaatgac      3720
     gttcggttcg acatgctcac cgtcatgcgc ccaggcagcc aagaaccaca acgcggaaag      3780
     actaaaagaa aagtatcctc tagcattgtc gccaataata aaccagcact acgtagatga      3840
     ctacgacgat agtttcaact ctttggagga agccaaggac accgtcgctc agataattaa      3900
     ggctcacgac gaaggtggtt tctttattac gaagttttgc tccaatgaca aaatgttact      3960
     agattcgatc ccagaaaaca gaagagaaat ggatacaaag aagtatctta atgacaagga      4020
     agacgaagcc gagaagatac tcggagtcta ctggaacacc aacaaggata cgatcgggta      4080
     tcaggtgaac ctagaaaaac tacccaaaga agtactctgc aaaatcagaa accctagcaa      4140
     acgcgaggta ctctcgttcg tcatgagtgt cttcgacccg ctagggctaa tatcgaatgt      4200
     aacaatccaa ggtaagatcc taatacagga gctgcataag gaaacaaagg actgggacac      4260
     acctatatcc gaaagagcac aaaagatatg gaactcatgg gtggagaaag tacaaaccgc      4320
     gagcaacata cgaatacctc gatggataat gaaggacgta ggcacgcaca tagaacttca      4380
     caccttcgtt gacgcttcgg ataaggcctt tgcagcaatc gtatacgcaa gaagtaatac      4440
     gcagcaaaac ccgtgcgtga gaatcatggc agcaaaatca cgagtagcac ccattaaacc      4500
     gctatcaatt ccgcgtctcg agctacaagc agcgctacta ggggtgagat tagcagatac      4560
     agtaaggcaa gaaacccgat tgaagatcat aggatccacc ttttggacag attccaaaac      4620
     agtcctctca tggatcaact ccgagcatcg aaaatataaa ccgtttatag ctcaccgcat      4680
     cggtgagata ctcgactcga ccactatgga ccaatggagg tgggtaccta ctaacgaaaa      4740
     ccccgcggac gaaggtacca agccatgtca taaaaaatcc atatggataa caggcccgga      4800
     attcctaaaa ctcccaacag aaaaatggcc ccaaacagaa ataaaagaaa cagaagtaga      4860
     ggcaaagttc gtgggcatac accaaaccaa caaagattat atacatgaaa acaaattctc      4920
     gaattggtgg aaactaatat tccgcctctg cgcgattctc aagatcattg atttcggcct      4980
     aaaacgcccg tgttttacta aaagcttcac tatgagagac agagtaagag cggaaaatat      5040
     actctaccgg aaggcacaag gcgacgtttt tcccgatgaa atcaatgatc taacagaaaa      5100
     cggagaactt acaacaattg gtcccctctc aaaactgaca cctatgctcg acgaaaatgg      5160
     agtcatgcgc tctcgcagta gattagagta cgctgacaac ctaccgaaag ctgcgagaat      5220
     accaataatt ctacctaaag atcatcacat aacccaatta attatcaaat ggtatcacga      5280
     aatgttcaac caccaagcag acaaatctgt actcgcagcc ctgcagcaga agtaccacat      5340
     aacgcgacta aacacagcat ttcaattagt caagtcacgc tgccaacact gcatgaacgc      5400
     aattataaaa ccaaaaatac cgataatggc cgcacttccg aagtgcagaa cagacaccta      5460
     tgtctatccc tttaatcata ctggggtgga ttatttcgga ccatttgagg tcgcagtcaa      5520
     cagatccaag gaaaaacgct ggggcgcgat cttcacctgt atgaccacaa gagccgtaca      5580
     catcgaactg gcgtcgaagt tggatacaga cgcattctta ttgtgcttca tgaattttca      5640
     aaaccgaaga ggtaaagtat cgcacttata cagcgataac ggaacaaact tcataggagc      5700
     agaacgagaa ctacgcagtc tggtagacca gataaattcc aaaatggaag ccgggcaagc      5760
     aatcaaattg gagctagaat ggcatttcaa ccccccaaaa gcaccgcatt tcggaggcgc      5820
     atgggaaaga ttgataagga ttgtcaaaaa cagcctcatg gaaacgataa catcacgcaa      5880
     ggatcactca gcaccaaatg ttgagatact gagaggcgcg ctaatccaag cagagttcta      5940
     tctcaattca cgcccgttaa cacatatacc gctagagtgt gaagatgatg aagtactaac      6000
     cccgttccat atcttaatag gaagagcggg atcattatcc gtgccatcta tgttcgagag      6060
     tcataaactc gagcggaaac attggcgact agcacaatat tacggaaagt acttctggga      6120
     cagatggaga aaagaatact taccaataat agcgcagcgg ccaaaatggc aaacaaaaac      6180
     taaaccgata caagtcaacg atattgtcgt aatagtcgac gccgaagcta aaaggaacca      6240
     atggctcaag ggacgagtca ttgaggtaaa agaatcaaag gacaaacaag tacgatcctt      6300
     gaaaattaca accaaattcg gaatttacca tcgcgcagca tccagcgtcg cagtactcga      6360
     cgtctacaga aagggagacg aatcaaacac agacgatgaa aacaaaaaaa ttggtgaagt      6420
     aaagtcattg ataacagctg ataaaaacac taataacata aagaagagag cagtagtaaa      6480
     tgacgagtgt gtcctagcaa cgtcatcaca acccgtcaag aagacaaagg caacagccga      6540
     caagtgcaac gaagcggcta catcacgcag cggcgacgaa gcagcggtgg caataacagc      6600
     agcagccaac gagtgcagcg aagcaacgtc atcaagcagc atcgaaggag cagcggcagc      6660
     agtagcaaca atcgacgggt gcagcgaagc aacgtcatca agcagcatcg gaggagcagc      6720
     ggcagcagta gcaacaatcg acgagcgcat cgaagcagca tcatccaaag tcactacggc      6780
     agcggcgcta gaacacgagc tgaacgaaat atcgacgaag gagaaaagca tctgtaaaaa      6840
     ccacgaccct gcaatattga cgagcttcaa taaacaccta cgggaaagaa ggcggaataa      6900
     acgaagaata aaaccaccaa cgtggcatct taacgaggaa ggcctaaccg ccacgacaag      6960
     gtacgtcacg gcatcatcaa aagacttgat aacgagagaa ctcaaagaaa acaataaccc      7020
     ggcgaagaaa gccagggtaa tcaacgccaa catgtggacc ttaacagtaa tagcactatt      7080
     cctactgatt agccaagcat taggaagtga gcttaaaggg ctcatagcgt acgattgcac      7140
     cagcaacaac gtaaacataa cgagctattc actgatggac gtcgcatcgt gtattccacc      7200
     aactaggaat ctcacgacta cggaagtccg catacaagtc ttacaaagaa gcccaaaagc      7260
     attcgtgaag gtccaccagt gcaaggtaat aataaaacga tcaatccgac actgcggtgc      7320
     gctttctcat acgtcagatt atgagcatgg gtacgcatac atcgtcaagg aattcacccc      7380
     ggacgaatgc aggttagctc aattgctcgg atccgtatca ctatccgaga gcaacaagat      7440
     tcgcgaactc cgtcgcaaca gcacaacgcg aggagaaaca ctaatagtag ggagtctgaa      7500
     aggaagctct tgtagcggtg gagtctacag aactgcatca tacacctggg aaggagcact      7560
     agttttctat gagtacgaga taagcatgta cgattacaca gcaacggcgg acatcgaaaa      7620
     cgaccaggtg gctctaagaa acggtatagt atgtgcctac aaaaccggat ggtgcctaga      7680
     ccctgagttc ggctacatga cgtgggaagt tgacctgcgg agacaatgcg aggagaccga      7740
     attcgaaatc atatatgaag ggactgtaaa caaaaccttt gatcacgata acgacaaatc      7800
     aagatcaaaa gcagtctaca cgcttctgtc ggacactcac atgttctcga taagagcacg      7860
     cgacaaaact caaatatgtg gattcgacgc gtacgttaca gaccacccca gaatctatat      7920
     aatagaggcc agcggattca agtccccctt caaacgaaag gaaagcaccg gacgaaacct      7980
     ggaccttttt acttacttca attcgaaaat aacgttggtc gagaactacc tgggccaaca      8040
     actgaatgaa gtatatacaa cagttatgac ggaaatgtgc aaaatcgaca aggcactaat      8100
     ggaaaccaaa cttactctag caagagtcaa cccaagcgaa ttcgtgtcca acatagtaaa      8160
     acgatccggg ttcaccgcta tcgtagcagc agaagtgctc tacatcatcg agtgtaaacc      8220
     agtcttcgta acatatgaaa gcaaacagga atgttaccaa gaaattcctg taaagtacaa      8280
     caacgtgtca atgtacatgg caccagtaac acgtatccta caaagaagag ggaccgaaat      8340
     agactgcaca cctctaatac cagcaaaatt caccatcgga ggaagatggt acaccacgga      8400
     ccaaagacta cgagagtcta cacccccgaa caaactaacg acagacgtca ttacaagctg      8460
     gtcatataca tcactaccaa gcctcatgca aagcggagtg tacgacgcag aaagccttga      8520
     aagaatgaaa aacatggtct acgagcaagg ggacaagaag atagcatcat cggtactcca      8580
     caaggcgata tcagggcagc atcccaatct acaaggatac accttcgacg ccctcatatc      8640
     tgaaaggatc gtcgacaacg ctttcaacaa atattggtct aaactcatct cctggtcaac      8700
     atggttaggc aacgtaacat caacggcact tggaatctac atgataacga ggatgatcaa      8760
     gttcgcagtc gacacgctga tacacggtag aatcctatac gatatatacg gattcggatg      8820
     gcagctattg gcgtcctttt gggactcgct aacgactctt ctatcgcacc gcaacgtaat      8880
     gaagcgatac caagacaaga acgacctaac ggaatgcacc actctagcgc cgcagccaac      8940
     tgacaagcaa gacgatcacc atgaggaaga atcaaacaac gagagcagac ctcgccccta      9000
     ccccaggccg agcaatatag tgacttctaa ataagacatc agataatcat aatacacaca      9060
     tggtaagaaa ttatatgaaa aataatcttt acatcatcat ttacaacaag actattgtac      9120
     gaccaagaat aataaaatta agtaaaaaca aaccgtatat atatatatat aaaaaaaaaa      9180
     aaaaaatacg atattgatat taaaatacaa tgtaaccatg tgacaattgt tttccttttt      9240
     tttagcaagt aagctcaaga ataacaacct ttataataat taaagaacaa gcataaacaa      9300
     tcataacgtc gcggaaacaa tattgtaaaa ttaaggattt tacgaagggc gg              9352
//
ID   BEL-801_AA-LTR repbase;    DNA;    INV; 1549 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-801_AA-I;
KW   BEL-801_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1549
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1549
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2022-2022 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1549 BP; 486 A; 392 C; 334 G; 336 T; 1 other;
     tgttaattcg cgacgattaa tttgcgatcg gatgcgaacc aatgacagag agaagaaacg        60
     aaattaaaca actagccaat aagcacgtaa tttacgaccc acaaacagaa gaaggcaact       120
     caaaccatgc gaagggatat actagaacct taccgatccc ttcccctata gcattctaaa       180
     cagacagagc catcactcag cacaaaaaac agatggtaac attagcatta gaaagtaaag       240
     gcgcactgcc ccatcaactc agaaggaagg gaaagccata aaaacaaaga tcgttaacaa       300
     tttccttcca tagcaagcag gtakgaccaa accgtcataa gcacaaagcg caggccctcg       360
     ctgagcctga cgcattcgat tgatacgcgg acaggagtca taacgaagag aaagggaaag       420
     cattgatcta atggtaaggc gcaacaagaa caaatatgtc cctgcgtcaa cccacgcata       480
     gaaagtaatc atcccacgca acgaaagaaa caaagtaatt aaattcgaaa tttattacct       540
     acgcactcag agacatacct tacgagaaaa aacctaaaac attgaaatct ctttgcttct       600
     ttctcgtggg agaaaattag atttaggcaa tcacgacaat tgtccctttc taactttaag       660
     aatcaatagg acctacgata gaactgcatt tgtcacttct tagaataagt cccccagatc       720
     gacgaaagtc gcctataaaa acccagaacc aaccacgaaa tacatgatct tacgtttaga       780
     ctcggaacag gcaactcgtc tttctagaga gaaattcctg gtaagtccaa ccactaaggt       840
     tatcaccaac gattgcaaac tcgactcctt cggttgcgga ctactcgcct ggcgggtgtc       900
     gttctgacga gtcagctttc aatcgttaag agagagagct ccctattgga accttccact       960
     gtcaggtact ggttaaaaca tcagcctgtc cgtctgaagg gaaagagaag gggatcaatc      1020
     tccaaccaag cctttcgaac acaaaaccgt cgtacaccgg ttgaccgctc gattccttcg      1080
     gttgcagact actcgcctgg cgggtgtcgt tccgacgact cggcgtgcat ccctttgcgg      1140
     atataatcca ctagttggaa ccttccactg tcaggtactg gttaaaacat cagcctgtcc      1200
     gtctgaaggg aaaaacaaga ggaaatatcc acgactggtt ctcctctgtt gttgaaccgc      1260
     cgtaacaacg gttaaacact cgcttccttc ggttgcggac cactcgcctg gcgagtgtcg      1320
     ttccgacgaa tcagtgctta actgttaaag agacacggtt ctctagtcga accttccgcc      1380
     agcaggtact gggtcagcca cccagcctgt cagtccgaag gggaagattg gggaaacgca      1440
     ctcagttggc gtctaccagt tgtcggtaag atcgagtaaa caccgcgaga tcgtgctaga      1500
     gtcgacgcgc ggattccggc cataaagaaa atcccgcggg ccgtttaca                  1549
//
ID   BEL-802_AA-I repbase;    DNA;    INV; 6194 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-802_;
KW   BEL-802_AA-I; BEL-802_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6194
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6194
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..720
FT                 /product="BEL-802_AA-I_1p"
FT                 /translation="MSSHGSRRGQSTVQTNVAGATGTTDRDRSSVEQFVVN
FT                 PNVPPPVQQVIDDKTNKAKPANTGAIKKSSSNPPAGDTVLNSPPVSAANAN
FT                 NEFVRRNPFRRARENRFDRCQVCGNQISDNLLQCNGCNANYHLECVKMSSG
FT                 PEGLTWWCSNCRTEVCASMRPRQLQQAPTKALSDPASNVFVDNSQYNPPPA
FT                 APAKRLSAATVRVGESNCSFKNWKRKRSSTSSIWTKSTIT"
FT   CDS           588..6191
FT                 /product="BEL-802_AA-I_2p"
FT                 /translation="STPSRTSKASISSHGTSRRIELQLQKLEEEKKFHQQY
FT                 LDQKYNHMMELESECSSDVLDTNELEKIEDWIAATEGCGEELDSGVDAELT
FT                 TGGRMQENAVPFTEHTARGANLQGTQLRNVNEPQHPQVENLGHPIRQSRQS
FT                 QFGMGNLNDIRAAIDNIGIPGPARLTYGQPDQNLGAASTTNNFLPRQGSTP
FT                 MHRSAPVQYPTIYPHHLDPVGNETVCILNRSQLAARQAISRDLPEFSGNSE
FT                 DWPLFLSVFNTSTQMCGFSPEENMLRLRKCLKDKALEAVRCRLLHPSNVDG
FT                 VIATLKMLYGRPEAIIQSIIKKVKSLPAPSMDKLETVVNFALAVENLVSTM
FT                 QACQIGDFMYNASLRLELVDRLPPTLKLDWARCVRNNPTPNLIDFSSWLYS
FT                 TAEDASAVMVSPSTAPKIRSTKKEGFLNHHTETSKQPIKSVVESPADAEIS
FT                 KVCIACRGSCSTLNACKRFNEFSFESKWATIKEHKLCRKCLRKHNGNCRSK
FT                 QQCGVNGCTYLHHPLLHGSRHVSGESNTSQQNSPQVETASINIHQGQSDFL
FT                 FRIFPVMLHGPRRTIRTYAFVADGSELTLVEQNLANELGLTGTAIPLCLRW
FT                 TGDTCRTEKSSQQVGLQISAVHCPDKKYSLSDVRTVGNLKIRPQTLEASKL
FT                 QKRYAHLAGIPLESYHSISPGLLIGLDNATLGHVIKSREGSFNEPIAVKTR
FT                 LGWTVYGCCSNNIKSIDHVNYHSVEACHSGISNEDLHSALKQYFALDSLGV
FT                 TPPYKQLLSSEDQRAQTPLQALTIPKNGRYECGLLWKYDSVRLPDSRLMAL
FT                 NRWKCLDRRMTKDPSLAKALRSKIDDYVAKNYISKLSIEELEIPRSRVWYL
FT                 PMFPVWNPNKPGKTRLVWDAAASAHGVSLNSVLLKGPDQLSSLLTILIKFR
FT                 EFKIAVCADIREMYHQVLMREDDQHCQRFFWKHKETDSDPSVYIMKVQSFG
FT                 ACCSPSIAQHVKNHNAKQFAREYPAAVQAITDCHYVDDMLMSVETESEAVQ
FT                 VSKDVREIHQRGGFEMHNWLSNSSQVLQALQEPTVKEKDFSSSSETMTEKV
FT                 LGMWWDTNVDCFTYKLSPRHDSDLLSGERRPTKREVLRTLMMLFDPLGLIA
FT                 HFTMLLKILLQEIWRTSVGWDDIIEDAQFSKWLEWLKALPRIPDIRIPRCY
FT                 RTLTSLTDGTDIQLHTFMDASENGFAAVVYLRFQEGQTIECSLVGGKTRVA
FT                 PLKFLSIPRSELQSCIIDIRLSETVRQSLSVKISRRFLWTDSRDVLCWLNS
FT                 DHRRYSQFVAHRISEILETSNVDEWHWIPTKHNVADDGTKWKQTINLSPSS
FT                 RWFTGPDFLCKPSEEWPVAADTIGTTEEELRPHLMVHSKFGDPIIKPENYS
FT                 QWSTLLKRTAYLYRVIENWRSRVNKKPLTVGPSTQPELAQAERFLYRLAQG
FT                 NTYFEEILALSSESSRGIKKLIAKSSSIRRLSPFLDEYGILRVRGRTSACK
FT                 FVNYDAMNPIILPHKNHITMLIVADFHRKFLHQNHATTMNEIRQRFHVTRL
FT                 KGVYRTVRKQCQQCRNDQAAPRPPAMGDLPQARLAAFTLPFVYMGVDYFGP
FT                 LFVVVGRRTEKRWGVLGTCLTTRAICIEIAHTLSTDSCVMALRNIMVRRGV
FT                 PAVIYSDRGTNFQGASKEVQQEMYSLQDRLAAEFTTSKTEWVFIPPASPHM
FT                 GGAWERMIRTVKQNLNKLQFDRFPSDEVLRNTMMEVENIVNSRPLTEIPLD
FT                 DDESPVLTPNHFLIGSQNGLKPRIPFDDSPSTLKYGWQHSKVMANKYWKLW
FT                 LRDYLPTLTRRSKWHSNVEPIKVDDIVIIVDPKLPRNQWPRGRVIGVTTAK
FT                 DGQVRSATVQTPSGGIYERPAIKLAVLDVGVSNNTLSEDPTCIQGG"
XX
SQ   Sequence 6194 BP; 1812 A; 1500 C; 1457 G; 1425 T; 0 other;
     tcttataaat tcatttgcca ttgcgtcgga atgtcgagcc acggatcaag aaggggtcag        60
     tccaccgtcc agacaaatgt agctggagct accggtacca cggatcgcga tcgttcgtct       120
     gtagagcagt ttgtggtaaa ccccaatgtc ccccctcccg tacaacaggt aattgatgat       180
     aagaccaata aagccaagcc cgccaatacc ggcgcgatta agaaaagtag tagtaatcct       240
     ccggccggcg ataccgtgtt aaattcccct ccggttagcg cagccaacgc gaataacgag       300
     tttgtcagac gtaacccatt tcgtcgcgcg cgtgagaatc ggttcgaccg ctgtcaagtg       360
     tgtggcaatc aaattagtga caatcttctt cagtgcaatg gttgtaatgc gaattaccac       420
     ttagagtgtg tgaaaatgtc gtcaggccca gaaggactaa cgtggtggtg ttccaattgc       480
     cgtaccgaag tgtgcgccag tatgaggccc cggcaactac agcaagctcc cactaaggca       540
     ttatcagatc cagcttcgaa cgttttcgta gataattctc agtataatcc acccccagcc       600
     gcaccagcaa agcgtctatc agcagccacg gtacgagtag gcgaatcgaa ctgcagcttc       660
     aaaaactgga agaggaaaag aagttccacc agcagtattt ggaccaaaag tacaatcaca       720
     tgatggagtt agaaagtgag tgtagcagcg atgtactaga tacgaacgaa ttggagaaga       780
     ttgaagattg gatcgccgca acagaaggct gtggcgaaga attggattcc ggagttgatg       840
     cagagttaac aactggagga cgtatgcagg aaaacgcagt accgttcacg gagcacaccg       900
     ctcgaggagc aaatctgcaa ggaacgcagc ttcgcaacgt taacgaacct caacacccac       960
     aagttgagaa cctagggcat ccaattcgtc agtcaaggca atcacaattc ggcatgggta      1020
     atctaaacga catcagagca gcaattgata acattggcat ccccggtcca gccagattaa      1080
     cgtacggaca gccagatcag aatttgggag cagcgtcgac caccaacaac tttctgcccc      1140
     ggcaaggttc tacaccgatg caccggtcag ctccggtaca gtatccgacg atttatccgc      1200
     atcatctcga tccggtagga aatgaaacgg tgtgtatact gaatcgaagc cagttggctg      1260
     ctcgtcaagc gatttcgaga gatctaccgg aattcagcgg caattccgaa gactggcctc      1320
     tctttctttc cgtattcaat acatcaaccc agatgtgtgg attctcgccc gaagaaaaca      1380
     tgttgagact gagaaaatgt ctgaaagata aagctttgga agcagtcaga tgccgcctgc      1440
     tacacccatc caatgtagat ggtgtaatag caactcttaa aatgctttat ggaagaccag      1500
     aggctataat ccaatccata atcaagaaag ttaaatccct gccggcccct agcatggata      1560
     aactggagac cgtagtcaat tttgccctcg cagttgaaaa cttggtatcc accatgcaag      1620
     cgtgccaaat aggggacttt atgtataacg cgtcactgcg actggagcta gtggatcgtc      1680
     tgccaccgac actcaagctg gattgggcta ggtgcgtccg caataacccg actcccaacc      1740
     ttatcgattt cagcagttgg ttgtacagca ccgcggaaga cgctagcgct gtcatggttt      1800
     ctccttcgac agcaccgaaa attcgaagta caaaaaagga aggtttcttg aatcatcata      1860
     cggagaccag caaacaaccc attaagtcag ttgtggaatc tcccgccgat gctgaaattt      1920
     caaaagtttg catcgcttgc agaggctcct gctctacgtt gaacgcctgt aagcgcttca      1980
     acgaattcag tttcgaatca aagtgggcga ctattaaaga gcacaagtta tgtcggaaat      2040
     gtctgcgaaa acataatgga aactgcaggt caaagcaaca atgcggagta aacggatgta      2100
     cttacctgca ccatcctctt ctccatggtt ctaggcatgt gagcggcgaa tccaacactt      2160
     cgcaacaaaa ttcaccacaa gtggaaactg ctagtattaa catacatcaa gggcaatcag      2220
     attttctgtt tcgaattttc cccgtcatgc tacatggacc acgtagaacg atacgtacat      2280
     acgcatttgt cgccgatggt tcagaactaa cactagtcga acaaaatctg gccaacgagc      2340
     taggattgac aggcacagca attcctttgt gcttgagatg gacaggtgat acatgtagaa      2400
     ccgagaaatc gtcgcagcaa gtgggacttc aaatatcagc ggtgcattgt ccagataaga      2460
     aatacagtct ttcagacgta cgcactgtcg gaaacttgaa aattaggcca caaacattgg      2520
     aagcatccaa attgcagaaa cgttacgctc acctagcggg gataccgctg gagtcctacc      2580
     atagtatcag tccaggtctc ttgataggac ttgataatgc gactctaggt catgtaatta      2640
     aaagtcgaga aggaagtttc aacgaaccca tcgccgtcaa gacgcgactc ggttggacag      2700
     tgtatggttg ctgttcaaac aacatcaagt cgatcgatca cgttaattat cacagtgtag      2760
     aagcttgcca ttccggtata agtaatgaag atctacattc agcgttgaaa caatattttg      2820
     ctctggatag cctgggcgtc acacctccct acaaacagct attgtcatca gaggaccagc      2880
     gagctcaaac gccactgcaa gctcttacaa ttccgaagaa cgggcgctat gagtgtggct      2940
     tattgtggaa atacgacagc gttaggctac ctgattcgag attaatggct ttgaaccgct      3000
     ggaaatgtct ggatcggcgt atgacaaaag acccctccct cgccaaagct ctgagatcga      3060
     agattgacga ctacgttgca aagaattata tcagcaaact ttctattgaa gagcttgaaa      3120
     ttccacgatc tcgcgtatgg tatttgccga tgtttccggt ctggaatccc aacaagccgg      3180
     gtaaaacaag gttggtatgg gacgcagcag cgtccgctca cggagtgtcc ttgaactccg      3240
     tgttattgaa aggcccagat caactgtcat ctctgcttac cattctcatc aagttccgtg      3300
     aattcaagat agctgtttgc gccgatattc gggagatgta ccatcaggta ctaatgcgag      3360
     aggacgacca acattgccag cgattctttt ggaagcataa ggaaaccgat tccgatccaa      3420
     gcgtctacat catgaaggta cagtcattcg gggcgtgctg ttcgccgagc atagcacaac      3480
     atgtaaaaaa ccacaacgct aagcaattcg caagagaata tccagcagct gttcaagcaa      3540
     taaccgactg ccattatgtg gacgacatgc ttatgagtgt ggaaacggaa tcagaagccg      3600
     tacaggtgtc taaggatgtc agagaaatcc accagcgcgg cggctttgag atgcacaact      3660
     ggctgtccaa ttcatcgcag gtgttacaag ctttacaaga accaacagtg aaagagaagg      3720
     acttcagtag cagctcagaa accatgactg aaaaagttct cggtatgtgg tgggatacga      3780
     acgtagactg cttcacatac aagctttcac ctcgccacga ctcggatcta ctgtcagggg      3840
     agcggcgtcc gaccaaacgt gaagttttac gaacgctcat gatgttgttc gaccccttag      3900
     ggctcatcgc ccacttcacg atgcttctga aaatattgct tcaagaaatt tggagaactt      3960
     ctgttggatg ggacgacatt atagaagatg cacaattctc taaatggttg gagtggttga      4020
     aagcattacc tcgtatacca gacatccgca ttccacgctg ctaccgcacg ttgacctcgc      4080
     taactgacgg gacagatatc cagcttcata cgttcatgga cgccagtgaa aatggatttg      4140
     ccgctgttgt atatctaagg tttcaagaag ggcagactat tgagtgttcg ctagttggag      4200
     gcaaaacaag agtcgcccct ttgaaatttc tttcaatacc ccgttccgag ctacagtcat      4260
     gcattattga catcaggctg agcgaaactg tccgtcaatc tctctcggtc aagatatcca      4320
     ggcgttttct ctggactgat tcaagggacg tgttatgctg gctgaattcg gatcatcgcc      4380
     gatacagcca attcgttgct catcggatca gcgaaatact agaaacatca aacgtagatg      4440
     aatggcactg gataccaacc aaacacaatg tggcagacga cggcactaaa tggaagcaga      4500
     cgatcaactt aagcccttca agccgctggt ttacagggcc agacttcctt tgtaaaccat      4560
     cagaagagtg gccagtagca gcagatacca tcggtactac cgaagaagaa cttcgtccgc      4620
     atctgatggt gcactcaaaa tttggagatc caattatcaa accggaaaat tactctcagt      4680
     ggtctacctt actgaagaga actgcttatc tttaccgagt tatagaaaac tggcgaagcc      4740
     gagtcaataa aaaaccgcta actgtaggac catcaaccca gccagagctc gctcaagctg      4800
     aacgcttctt atatcgtcta gcacaaggaa acacgtactt cgaagaaatt ctcgctcttt      4860
     catcggaaag ctcaagagga ataaaaaagc taatagcgaa aagcagttcg attcgccgat      4920
     taagcccctt tttggacgaa tacggcattc ttagagttcg cggccgcacc agtgcctgca      4980
     agttcgtaaa ctacgacgcg atgaatccta taatcctacc gcataagaac cacatcacga      5040
     tgttaatagt ggcggacttt caccgtaagt tcctgcatca aaaccacgcc actacgatga      5100
     atgaaattcg tcaacggttt catgtcacac gactcaaagg tgtctaccgc actgttcgca      5160
     aacagtgcca gcaatgcaga aatgatcaag ccgcgccacg acccccagct atgggagatc      5220
     taccacaggc acgtctcgct gctttcactc ttccgttcgt ctacatgggg gtggattatt      5280
     tcggcccact atttgttgtg gtcggccgcc gtactgagaa aagatggggt gtcctgggaa      5340
     catgcctgac gactcgcgcc atttgcatag agattgccca cactttgagc accgattcat      5400
     gcgttatggc actgcgaaac atcatggtac ggaggggggt tccagcagtc atttacagtg      5460
     accgagggac aaatttccaa ggtgccagca aagaagtaca acaggaaatg tacagtcttc      5520
     aggatcggct cgcagccgaa ttcactacct ccaaaacaga atgggttttt attccacccg      5580
     cctccccaca tatgggagga gcatgggaac ggatgatcag aacagtcaaa caaaatttga      5640
     acaaactgca gttcgatcga ttcccaagcg atgaagtcct aagaaatact atgatggagg      5700
     tggagaatat agtaaattct cgtccgctga ccgaaatccc gctggacgac gatgaatcgc      5760
     ctgttttaac gcccaaccat tttctgatag ggtcacagaa tgggctaaag ccacggattc      5820
     cattcgatga cagtccgtca accctaaagt acggttggca acattctaaa gtgatggcca      5880
     acaaatactg gaagttgtgg cttcgcgatt accttccgac gttaacgcga aggagcaaat      5940
     ggcacagcaa tgtagagccg attaaggtcg atgacattgt aatcattgtc gaccccaagc      6000
     taccacgcaa ccaatggcca agaggacgcg ttatcggagt cacgacagcc aaggatggtc      6060
     aagtaagaag cgcaacagtt caaacaccaa gtggaggcat ctatgaacga ccagcgatta      6120
     agcttgcggt gctcgacgtt ggcgtttcaa ataatacact ttcggaggat cctacgtgca      6180
     ttcaaggggg ggaa                                                        6194
//
ID   BEL-802_AA-LTR repbase;    DNA;    INV; 637 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-802_AA-I;
KW   BEL-802_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-637
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-637
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2115-2115 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 637 BP; 225 A; 114 C; 107 G; 191 T; 0 other;
     tgttaggagc gcctagttaa tccgcaagcc cctcgttcat gaagtacaca cccatgcccc        60
     aagcgaagga tcgtcgcacg tagggagctg aaccatgaac aataggtcta ttctgacaga       120
     tcggtctagc aagggcatta gagaagacac ctcacgttgt ttgtgctata agttcaatat       180
     aatattcttt ctttgaaatt tgataattag ttggctaaat ctaggtaaat taatcgctag       240
     tgaggatttg gattcgctta aatctaaatt aaaataatga atttacttaa aactacaggt       300
     cacatgcaat atcagaattt cctagggtaa acaatcggca atcatattgt tgaacctatg       360
     ttagggtaag aaattgatcg tcataaattg aaatttatta taatgcatta attatcacca       420
     aacagactac gatcaagaat tatgataaat agcgagatca tcaaacccgc aaagcagatg       480
     tgaatcacca aatgtacgta aaatttaatt caaattatgg attacatatt cctaacctaa       540
     atctttccta ggaatttata attcgcattt cttggatcat acgctggaaa taaattcata       600
     aattcaacta ttcacgagtc gaatcatttc gataaca                                637
//
ID   BEL-803_AA-I repbase;    DNA;    INV; 6073 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-803_;
KW   BEL-803_AA-I; BEL-803_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6073
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6073
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2157-2157 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..6072
FT                 /product="BEL-803_AA-I_1p"
FT                 /translation="MSDLNRTPEPMLSGCVACNRPHTEDNFVCCDKCDGWW
FT                 HFSCAGVTASVEMRDWICSRCLSAERHPTGSIAPSAKSISSSQRLRTQQHL
FT                 AYLAEQQDLERKQMLREHELQKKHLEQKHQLLTVHEEGDDQSVRSRRSIFS
FT                 VSARSNRTMDWVRQHKNVAAEKEEQGAIGGTKNNISAGPATRTQQAQEQGP
FT                 VTEIFDESELVKDLKEKLKMREEESQQQIRMLQDQLHKLQLEMRNQGKQDE
FT                 TTATVKPKGAVSKTRPNIPNIDPPSEFQHKDIDWQISPIATGRPEPTMNFE
FT                 QLRKHARSLHNSIPLPNNHPFEQQREVARSEQNNRNACPAAAQSSSMGRNS
FT                 VLERPQPQLIQTVAHSQQTSSSEPPVAQHHSVPDAGPTQEQLAARQVLPRD
FT                 LPTFNGDPADWPVFISHYNYTTQACGYSNGENMIRLQRCLKGAAWESVRSR
FT                 LILPASTPQVIESLRMRFGRPDLLIESFIDKVKASIAPRADKLDTLIEFGT
FT                 SVQGLCDHIIAANLLEHLENPTLLKDLVGKLPAEYRMKWASYRKQAITVNL
FT                 KTFSAFMEEIVEDAYSVSTFTTNKRDKQRHADGSFVHSNAGDGMQQNCEGS
FT                 GIKYETQVTTGVECSVCRKFGHRAKDCKIFLAMSIDDRWKKIQSQDLCRTC
FT                 LFGHGRRACRNTNRCGIEGCYYRHHPLLHPTEAKQSAPNKNQIVNHMFHSI
FT                 HCKLLFRIIPVTLYGQESIINTFAFLDEGSSLSMIESSLADKLGVDGYSRP
FT                 LCLKWTGNVTREEKHSKRVAFGISGRGDMERFWISDVGTTKSLDLPMQTLP
FT                 IKELKQSYQHLRGIPVEEYHDAVPRLLIGVDNLKLSLPLKVREGEEGVPVA
FT                 VKTRLGWCVYGGHKNGESPMVSYHICECDGDTAMEDTVKAYFSMEDVGARP
FT                 MNECLSKEDQRALKILEETTIFVGERYESGLLWRFDQFEFPDSFPMAVKRL
FT                 RCLQRRMEKDPVLKENIQHQIQEYLDNGYAHRASVEEMSIADPRRIWFLPL
FT                 GVVVNPKKPSKIRLIWDASAKVDGVSLNSMLLKGPDQLSSLPSVLFRFRQH
FT                 RVAVVGDIKQMFHQILINHSDRYAQCFLWSPDASKKPDIFVMNVATFGSTS
FT                 SPATAHFVKNTNARRFSKEFPRAVEGIVYNHYVDDYLDSFPDEAEAKQVVE
FT                 EVREIHRRGGFEIRNWCSNSSAVLEHLGENPDXVVKKLNADCGGLPDRVLG
FT                 MLWNSEEDVLHFETTMRENIKKIIQEDVRPTKRQILQCVMTLFDPIGLLAP
FT                 YLIFGRVLIQDVWRAGTKWDEQVDDNIFQRWREWVKILQDIDQVRIPRSYF
FT                 RYPNRLSVNNIQLHIFVDASPAAYSCACYFRIINDRGEAEVALVAAKAKVA
FT                 PLKMMSIPRLELQACVLGVRMMKLVIDGHTFPIKNRFLWTDSSTAHTWIKG
FT                 DPYRYRSFVAHRVSEILETTKREEWRWLRSNMNSADEATKWGVGPHFDINS
FT                 IWYSGPKFLQSPEVAWPTAEPEKQEEAEVRSCYLHREICVPESIVDVTRFS
FT                 TWKKLLRSTAYVXRFVSNSRTPVQNRSCGHLSTKELQKAEATLFRMIQWDC
FT                 YPEEMIAMTNPKGIKSAEGNVVEKNSVLYPFTPRIDTHGVLRVDGRIGAAK
FT                 RVTRDVKYPIILPKKHHVTNLILEDFHRRFKHGNNETIVNEVRQRFYIPNL
FT                 RRHVRNLASRCFFCRIRKALPLVPQMAPLPEARLSPFTRPFTYVGVDYFGP
FT                 ISLKRGRNCVKRWVALFTCLTVRAIHVEVVYSLTTEAFIMSVRRFVGRRGA
FT                 PAEIYSDNATNFHGAERILRQQINTGLAATFTNTCTTWKFIPPGAPHMGGS
FT                 WERMVRSMKSALSVAYCDEKLDDEAYQTLLVEAESIVNSRPLTYLPLLSTE
FT                 QEALTPNHFLLGSSSGVIAPSVLKVDKPQELGRSWSILQKQLDRFWKRWVR
FT                 EYLPTLTKRTKWFAKSRNVQPGELVLIVEDKKRNGWTRGRILEVIPAADGV
FT                 VRQALVQTASGVLRRPVSKLAILEIANDDETSRPEDFIGGR"
XX
SQ   Sequence 6073 BP; 1804 A; 1347 C; 1450 G; 1470 T; 2 other;
     aacttcaaag aattcatctc cattatgagt gatcttaatc ggacgccaga gccaatgctg        60
     tccggctgtg ttgcctgtaa ccggcctcat acggaagaca acttcgtttg ttgtgataaa       120
     tgcgatggtt ggtggcattt ctcctgcgcc ggcgttacgg cttccgtaga gatgcgcgat       180
     tggatttgtt cgagatgtct ttcggccgaa cgccatccga ctggtagtat agcaccgtct       240
     gcgaaatcaa tatcctcaag tcagagactt cgaactcaac agcatttggc atatctagca       300
     gagcaacaag acttggagag aaagcaaatg ttaagagaac atgagctaca aaagaagcac       360
     cttgaacaaa aacatcagtt gcttacggta cacgaagaag gtgacgatca gagtgtgcgt       420
     agccgtcgta gcatctttag tgtatcggca cggagcaacc gaactatgga ttgggtacga       480
     cagcataaaa atgtggcagc cgaaaaagaa gaacagggtg cgataggcgg aacaaaaaac       540
     aacataagtg ctggacctgc cactagaact cagcaggctc aagagcaggg tcccgtgacg       600
     gaaatcttcg atgaatcaga gcttgttaaa gacttgaaag aaaagctcaa gatgcgtgaa       660
     gaagaatccc aacaacaaat tcgtatgctg caagatcaac tacataaact gcaactcgaa       720
     atgcgaaacc agggcaagca agatgaaaca acggccacag tgaaacccaa gggggcggtt       780
     tctaaaactc gtccgaatat tccgaatatc gacccaccat ctgaattcca gcacaaggac       840
     atagattggc aaatttctcc tatcgccacg ggcagaccgg aacccaccat gaatttcgaa       900
     cagctgcgaa aacacgcgcg ttcattacac aacagcattc ctttgccaaa taatcaccca       960
     ttcgaacagc agcgtgaagt cgcgcgttcg gaacagaaca atagaaatgc ctgtccagcg      1020
     gcagcccaat cttcatctat gggaagaaac tcggtattgg agcgtcccca accgcagttg      1080
     atacaaactg tcgcgcactc gcagcaaacg agcagcagcg aaccaccagt ggcacagcat      1140
     catagcgtgc cagacgccgg gcccactcaa gagcaattgg cagctagaca ggttctacca      1200
     cgtgatctac cgacgtttaa cggtgatcca gctgactggc ctgtattcat cagtcattat      1260
     aactatacaa cgcaggcctg tgggtatagt aatggtgaga acatgattcg tttacaacgt      1320
     tgtctaaaag gcgctgcctg ggagtctgta agaagccgct taatccttcc ggcatccact      1380
     ccacaagtta ttgaatctct acgaatgagg tttggtcggc ccgatctact aatagagtct      1440
     tttatcgaca aggtgaaagc ttcaatagcc ccacgagcag acaaattgga tacgttaatt      1500
     gagttcggaa catcagtaca aggtctttgc gatcatataa ttgccgcgaa tctgctggaa      1560
     catttggaaa atccgacact attgaaagat ctcgtaggaa aactcccagc cgaatataga      1620
     atgaaatggg catcgtaccg gaaacaggcg atcactgtta atctgaagac ctttagcgct      1680
     tttatggaag aaatagtaga agatgcatac agtgtgtcca ctttcactac aaacaaacgt      1740
     gataagcaga gacatgccga cggtagcttc gtccattcaa atgctggtga tggtatgcaa      1800
     caaaattgtg aaggaagtgg gattaaatac gaaacacagg ttacgacagg tgtagaatgt      1860
     tctgtttgcc gtaagtttgg acacagagcc aaagattgta aaatttttct ggccatgtcc      1920
     atcgatgatc gttggaaaaa aatccagagt caagatctgt gccgcacctg tctctttggc      1980
     cacgggcgta gagcatgccg caacactaat cgctgtggca tcgaaggttg ctattatcgc      2040
     caccatccat tgctacatcc tactgaagca aaacagtcag cacctaacaa aaatcaaatt      2100
     gttaaccata tgttccatag tatccattgc aagcttctat ttcgaataat tccagtcacg      2160
     ttgtatgggc aagagtcaat catcaacacc tttgcctttt tggacgaggg ctcctctctt      2220
     tcgatgatcg agagtagtct ggcagataaa ctaggagttg atggatatag caggccgcta      2280
     tgtttgaaat ggaccggtaa tgtgacacgc gaagaaaagc attcaaagag agttgcgttt      2340
     ggaatctcgg gtcgaggaga catggaacgt ttctggataa gcgatgtcgg cactaccaag      2400
     tctttagatt taccaatgca gactttgccc atcaaagaat taaagcagag ctatcaacat      2460
     cttcgaggaa tccctgttga agaatatcac gatgcggtgc cccgtttact tattggggtt      2520
     gacaatctca aattatcact cccactaaaa gtacgtgaag gagaagaagg tgttccagtt      2580
     gcagtgaaga ctcgccttgg atggtgcgtt tacggcggcc ataaaaatgg cgaatctcca      2640
     atggtcagtt atcacatctg cgaatgtgac ggagacacag ctatggagga tacagtcaag      2700
     gcgtactttt ctatggagga cgttggtgcg cgcccaatga acgaatgtct ttcaaaagag      2760
     gaccaaaggg ccctcaaaat actggaggaa actacaatct tcgttggtga acgatacgag      2820
     tctgggcttt tgtggagatt tgatcaattc gagtttcctg acagcttccc aatggctgtc      2880
     aaaagattac gatgtctaca acgcagaatg gaaaaggatc cagtcttgaa ggagaacatt      2940
     cagcatcaga tacaagaata cctggataat ggatacgccc accgagcatc cgtagaagaa      3000
     atgtccatag ctgatccacg tcgaatatgg ttccttccat taggggtagt agtgaatccc      3060
     aaaaagccat caaagattcg tcttatatgg gatgcctcag ctaaggtaga tggtgtatcg      3120
     ttgaatagta tgctgttgaa aggacccgat caattgtctt ctctgccgtc tgtgctattt      3180
     cgcttccgac aacatcgggt agcagttgtc ggggacataa aacagatgtt tcaccaaata      3240
     cttatcaacc attctgatcg ttacgcacaa tgttttttat ggtcccctga tgcctcgaag      3300
     aaacctgaca tatttgttat gaacgttgct acattcggat caacaagctc cccggccaca      3360
     gctcatttcg taaaaaacac taatgctcga agattttcca aggagtttcc tagagctgta      3420
     gaaggtatcg tttacaacca ctatgttgac gactacctcg acagctttcc ggacgaggca      3480
     gaggcaaagc aagtggtgga agaggttcga gaaatacata ggagaggcgg cttcgagata      3540
     cgcaattggt gttccaatag ttctgcggta ctcgaacatt taggagaaaa tccagatamc      3600
     gtcgtgaaaa agcttaacgc agattgtggt ggactaccag atcgcgtcct gggaatgcta      3660
     tggaacagcg aagaagatgt attgcatttt gagacgacta tgagagaaaa catcaagaaa      3720
     ataatacaag aagatgtgag accaactaag cgccaaattc tgcaatgtgt gatgacgctt      3780
     tttgatccaa ttggacttct agcgccttac ttgatatttg ggagagttct catccaagat      3840
     gtttggcgag ccgggacaaa atgggacgag caagtggacg acaacatctt ccagcgctgg      3900
     cgagagtggg tgaagatatt gcaggatatc gatcaagtcc ggataccacg aagttacttc      3960
     cgttatccaa accgactcag cgttaacaat atccagctac atatatttgt agatgccagt      4020
     ccagccgcat attcttgtgc atgttatttt cggataatta acgaccgtgg agaagcagaa      4080
     gtagcattgg tagctgctaa agcaaaagta gctccactga agatgatgag cattcccagg      4140
     ttggagcttc aagcttgcgt actaggagtg cgtatgatga agcttgtaat agacggccac      4200
     acgtttccga taaaaaaccg gtttctctgg acagattcca gcactgccca tacttggatc      4260
     aagggagacc cgtacaggta tcgttcattt gttgcccatc gagtcagtga aattttggaa      4320
     acaacgaaac gcgaagaatg gagatggctt agatccaata tgaattctgc agacgaagcc      4380
     actaagtggg gcgtgggccc tcattttgac atcaacagca tttggtacag cggaccgaaa      4440
     ttcttgcagt ctccagaggt tgcatggccc actgcagaac cggaaaaaca agaggaagca      4500
     gaagtacgtt cgtgttacct gcatcgagaa atctgtgttc ccgaaagcat tgtggatgta      4560
     acacgatttt ccacatggaa gaaactacta cgttcaactg catatgtatg scgtttcgtt      4620
     tcaaacagtc ggacacctgt tcaaaatcgt agctgtggtc atctgtccac gaaagagctt      4680
     caaaaagcag aagccacgct atttaggatg attcaatggg actgttatcc agaagaaatg      4740
     attgcgatga caaatcccaa aggaataaag tccgccgaag gaaatgttgt cgagaaaaac      4800
     agcgttcttt atccgtttac tcctcgtatt gatacgcatg gagtactacg ggtcgatggt      4860
     cgtataggcg ctgcgaaacg agtgactcgt gacgtgaaat atcctattat cctccccaaa      4920
     aagcatcacg tcaccaatct aatactagaa gactttcatc ggcgattcaa gcatggaaac      4980
     aatgagacga tcgttaatga agttcgccaa cgattctata ttcccaatct tcgcaggcac      5040
     gtaaggaacc tagctagccg ttgctttttc tgtagaatca gaaaagcact tccgttagtc      5100
     cctcaaatgg ctccgcttcc agaagcccgt ttatcaccct tcacccgtcc cttcacgtat      5160
     gttggggtgg attatttcgg ccctatttcc ctaaaaagag gtcgaaattg tgttaagcga      5220
     tgggtagcgc tttttacgtg tttaaccgtg cgtgctattc acgtagaggt tgtttacagt      5280
     ctcactacag aagctttcat catgagtgtg cgcaggttcg taggtcgtcg aggagcacca      5340
     gctgagattt atagcgataa tgctactaac ttccacggtg cggaacggat tcttcgacaa      5400
     cagatcaaca cgggtttggc tgctacattt acaaacactt gtactacatg gaaattcatc      5460
     cctcccggag caccacacat gggtgggtcc tgggagcgaa tggtaagatc tatgaaatct      5520
     gcactctcgg tagcatattg cgacgaaaaa ctggacgacg aggcatatca aacgttacta      5580
     gtcgaagcag aatcaatcgt caacagtcgg ccgttaacgt atctaccact gttgtccact      5640
     gagcaggaag cattgacacc caatcatttc ctgcttggta gttcatcggg agttatcgcg      5700
     ccttctgttc taaaagttga taaacctcaa gagctcggcc gatcctggag tatattacag      5760
     aaacaactag atagattctg gaaaagatgg gtgcgtgaat acttgcccac ccttaccaag      5820
     cgtacgaaat ggtttgccaa atccagaaac gtacagccag gagaactggt tctgatagtg      5880
     gaagataaga aacggaatgg atggaccagg gggcgtattt tggaggtcat tcccgctgca      5940
     gatggcgtcg tcaggcaagc actagtacaa actgccagtg gagtacttcg acggccagtt      6000
     tcgaaacttg ccatacttga gatagccaac gatgatgaaa cctcaaggcc cgaggatttc      6060
     atcgggggga gga                                                         6073
//
ID   BEL-803_AA-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-803_AA-I;
KW   BEL-803_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-595
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-595
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2023-2023 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 595 BP; 189 A; 115 C; 100 G; 191 T; 0 other;
     tgttgccgcg ccacaattct actggcaacc ctctcgacac agacatctct gcttcatgag        60
     tgcgtcagtc tattgctact tcaacattgc tattgtccta ttgctactgt caacacagtg       120
     actagacata atcacaaaat ctacaaccct acttagagag tgagaatacg agtttgatta       180
     aattatatta ttagctttgg tgaatttgtt aaccattatc ttatagacaa gtaggtaccc       240
     actatatatc ctgaattatc cattatacta aaatacggaa tttcattaga caacctaatc       300
     agacgactca atataggtga gcagcgacga atagttgagc atcgaaagtc gcaagtatgt       360
     actcatgaat tcttagttta catatctaat tagtcgattt atagtaccag agttcgtgag       420
     aattaggcac agttgatgcg tggatacctt agtttagaga agaacactga attgtatgta       480
     tgacttttgc ttcttatttg acacttataa caaaaattgt gtatttcagc tttgaagcac       540
     tactgttcaa taaacgctat caaaaatcag tagtttctct ggtccagtat caaca            595
//
ID   BEL-804_AA-I repbase;    DNA;    INV; 8528 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-804_;
KW   BEL-804_AA-I; BEL-804_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8528
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8528
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1154..6736
FT                 /product="BEL-804_AA-I_1p"
FT                 /translation="METKFKINKNGNCRLCQDRDDKENMVACDDCDRWFHL
FT                 SCVDLIEKPGRKDPWACCKCNKIKLQIKAQEDQIKILTATPNKENNYIEAF
FT                 EALIEKIKGIDVNARSTVEKHVLRQSLMDLPYFDGNHKVWPRFKQTFIETT
FT                 KEGNFSDLENLNRLQKSLKGDALKAVNSLLLDSSNVYAIMQRLEDLFGSVE
FT                 SIYSGLLQDVMSSRNPKFDLPKTMVDFISAIGNLVTNMKCLNHEEYLNDPR
FT                 LVRDLSRKLPTNLHQQWLRHVNEDKELSTSLNPFVAPSLEDFYEWLKPQEK
FT                 LATMLLAEKTNRFENTRSEKTDRVNYHNMSRFKCMKCGMAHKLAACTEFRK
FT                 MSVEKRREYVKEKNLCFSCCNPNHSVKSCREKRTCNIDGCISKHNRLLHLK
FT                 TNDTPKTETKTVNGQINYHAQNRSKAFFQILPVTLSNGNNKIKTYIFFDSG
FT                 SSVSLIDQNIVNELNLTGVRNPVSFVWTNGCIQEENDSQIVQVKAEGSNGK
FT                 TFLLRNLCTMKALALPIQSVNARSLEEKHPYLKGTNLDSYENVAPTILIGQ
FT                 PHAYLFKALEERSGGFNEPIATKTRLGWVLFGSSRNSPRCQYDNMNHVFIL
FT                 NQIDDEEKSIREMMSNYFSTEAFGVKVPSNALIAKTDERALKIMGETLRAT
FT                 ENGYEIGLLWKKDKVELPDSFKTALKRFLQQEQKFEKDQSLKTWYHEKINE
FT                 YVAKGYLKKLSPEEYMIENPKTFYLPHFIAINKNKQKPRMVFDAAAKIEGI
FT                 SLNSQLLSGPDMTASSLGIKMRFRENSIAIAGDIQEMFHRIGIIEEDRSSQ
FT                 RIVSRERPNTPLNVYEMQVMTFGATCSPACAQFVKNTHAEKYKEKSPEAVE
FT                 AIIHNHYVDDYLDSFDDMGKAVKTVTDVIQIHDEANFKIRNFISNSKTLLK
FT                 QLPEDRISPVKEVSLDDSESVFEKVLGMYWNTRDDKFFFKITPPNKNLMEP
FT                 TKRQVLSFIMSVYDPLGLIAHITIESKILMQDIWRLGIDWDDKIPKEMNKR
FT                 WDTWLNKLSSLQHLRIPRCYSYSKAILKRELHVFCDASQNAFATVIYMRTI
FT                 CEDGINITIVADKSKVAPTKIMSIPRLELQAAVLGTRICATVQKEIRLKIN
FT                 QIVYWTDSKTVLSWIKSELRKFNQFVQHRVSEILDSTMESQWHYINTAANP
FT                 ADEGTKTTHAKTMWIDGPSFLKEDEDHWPANYIEKAIYDPELGKEELRPVH
FT                 ATKHVDRTKLDIINVEWCSDWTRLRRAVCIAMKYTDWLKSKAFNSNFNKEI
FT                 TATDMENAETLLITKAQWESFPDEMTELSLKQTVDKSSSIRKLTPFLDQDG
FT                 TMKSATRYENAKCVPYGARHPYILPAKHHISNLILKWYHEEFKHKKFKTAV
FT                 AAVNQKYHIINIDAGMEKIKNRCQHCKNDNAKINAPKMAPLPECRLQPYVK
FT                 PFTHTGVDYFGPYNVTIGRRTEKRWGALFTCMTTRAVYLELAHDLSADAFF
FT                 LCLNSVQNRRGRIKFLYSDNGTNFVGADSELRKLKHRLASKGIEWHFNPPA
FT                 APHFGGAWERLVQEVKSLLPNQPMPEHTLRSLLTEIENIINSRPLTSISLD
FT                 ATDDEPLTPNHFLIGCSGGAEPSLNDVSKAEASRAQWKKAQLMAKTYWDRW
FT                 LHEYLPTLAKRTKWSEAIKNVQEGDVVMIADDDQKARWKKGIITKTHISKD
FT                 GQVRSAVVKTATGEYTRPVIKLAVMDVRAPEIPAEGKNTGTESTKENKTAT
FT                 KRSSNQPADEACTSKQRKFMGRTSENILKGYEFGKAKTIDVDKVKEIAAEI
FT                 AKPKVKKAKSRVRPVTWMNWMVILYLACVMFGTALSFEGSGLIAYDCGNPE
FT                 VNLTSYSLLDVASCIPPLNNLTTNEIQIQVLQRNAKSDI"
FT   CDS           6788..8494
FT                 /product="BEL-804_AA-I_2p"
FT                 /translation="MHSHTSDYERSYEYIVKEFTSEECRYSQQLGIVKLTY
FT                 DIQLRELKRNATTRGETLIVGSVWGSNCKGGTYRTPIYTWVNALVYYEYEI
FT                 TLHDYVATVDYENDVIHLRNGLTCVYSHGRCLDTEDGYITWDMASNNKCEE
FT                 TEYEVIYEGIVNKTMNENKNKQIEKANVVYSTVSNTHLFSIRAKEQTKICG
FT                 HVGFTTDHPRILIVDVIGFNSPFRRKAATGKNFDLFTYFNSKITLVENYIG
FT                 QSMTELYNTVMTEMCKVDKALMETKLTLARLNPTEFVTSIIKRSGYTAVVA
FT                 GEVLHILECKPVYVTPRSDDTCYQEIPVNYNNQTMFIAPVTHILQKRGTQI
FT                 DCTPLLPAKFQIGGRWYTTDGRIREAISPLKLTTDLLTTWSYTHLPNLMQS
FT                 GVYDADSVEKMRNMIYEQGDRRVASNVLHKILIGQQPEFQGFRFEALVSNK
FT                 VIESIIEKYWNKLMSWSTRLGNITSTFIGLYMIGRIIKFLIDTIMHGRILY
FT                 DIYGLGWQLLASFWDSLTNFLSHRNAMKRTAGQENNLQPEKQEDEVLQVDE
FT                 EEIYTQIARPHPTPYSRTSIQV"
XX
SQ   Sequence 8528 BP; 3020 A; 1726 C; 1768 G; 2014 T; 0 other;
     ttttggtggc tccagagagg aacgctggag ggtgtcttgc aaacgtcgta cgaaaatcga        60
     tccccttaac cggagatccc agtagtacaa gacaattttt gagcgagaca tccaggatta       120
     tttgaacttc cagtcagtcg aaatctgact gccgtgaaaa gtaaaagtgg gctccggcca       180
     aaaaacgtct tagtggccta gtgccaaaac atgaacagta accttgagga cgaagtgaac       240
     catatggtgg aatatttcag ggaaattgat tcccaagtgt cgctcttaaa agagactgaa       300
     gaatataaaa agtgggcaag tttgccaata cccaccggtg aaataagtga aactcgtgcg       360
     ttccccgtag tcctttggcg aggaaccaac caaaaacaaa tattcattca gagaatcacg       420
     aagatcgtcc cgcttcgttg gaggagacga ttactcggtc cgcgaacgac tattcgccct       480
     gttgagaggc ctagtcctgg tgtacgccgt tgccaacccc gaaggaagga accgacgact       540
     atccgccctg ttgagaggcc tagtcccggt ccgcgcagtt ccatcaataa gaaagaaaaa       600
     gcaatcgcac gactatccgc cctgttgaga ggcctagtcc tggtgtgcgc cattgccaac       660
     cccgaaggaa ggaaccgacg actatccacc ctgttgagag gcctagtccc ggtccgcgca       720
     gttgcatcaa taagaaagaa aaaagcaatc gcacgactat ccgccctgtt gagaggccta       780
     gtcctggtgt gcgccattgc caaccccgaa ggaaggaacc gacgactatc cgccctgttg       840
     agaggcctag tcccggtccg cgcagttcca tcaataagaa agaaaaaaaa gcaacctaac       900
     gactatccgc ctgcctgaga ggcctagtct ggactcgacg cgccaggcca acgatccaag       960
     caactatccg ccctaccaag agggtcaagc taaagacaat aagaaagagt gagtcaaacc      1020
     gatcattatc actatattga ttacatatat acatataaaa aaaaaagtta cattgaaacc      1080
     tttagtttat atatattttg aaaacaacaa atctctaaat tttactaaaa gttgtatctg      1140
     atcgcctagt aatatggaaa caaaatttaa gataaataag aacgggaatt gccgtctttg      1200
     tcaggacaga gacgacaaag agaacatggt ggcctgcgac gactgcgatc gctggttcca      1260
     cctgtcctgc gtagatttaa ttgaaaaacc tggaagaaaa gacccctggg catgttgcaa      1320
     atgcaacaag atcaaattac aaataaaagc ccaggaggat caaataaaaa tactaacggc      1380
     aacgccgaat aaagaaaaca attatatcga agccttcgag gcgctaattg aaaaaattaa      1440
     aggtatcgat gtcaatgcta ggtcgacggt tgagaagcat gttttaaggc aatcactaat      1500
     ggatctgcct tactttgatg gcaatcacaa agtttggcca cgttttaaac aaaccttcat      1560
     tgaaacaaca aaagaaggca atttttcaga cttagaaaac ttaaatcgtc tgcaaaaaag      1620
     cctgaaaggc gatgcattga aggcagtcaa ttcactttta ctggactcca gcaatgtata      1680
     cgcaatcatg caaagattag aagatttgtt cggaagcgtt gaatcaattt actcgggttt      1740
     actacaagat gtgatgtcat caagaaaccc taaattcgat ctcccgaaaa ctatggtgga      1800
     tttcatatcc gcgatcggta acttagttac caacatgaaa tgcctcaatc atgaggaata      1860
     cttgaatgat ccaagattgg tcagagatct atcaagaaaa ttgccaacca atctacacca      1920
     acaatggcta cgtcatgtca atgaagataa ggaattatct acttcgttga atccatttgt      1980
     tgccccttca ttggaagact tctatgagtg gctgaagccg caagagaaac tagccacaat      2040
     gttgttggca gaaaagacaa acagatttga aaacacacga agtgaaaaaa cggatagagt      2100
     taactatcac aatatgagcc gattcaagtg catgaagtgc ggaatggccc ataaactcgc      2160
     tgcatgcact gaatttagga aaatgagtgt tgaaaaaaga agggaatacg taaaggagaa      2220
     aaatctttgc ttctcctgct gtaacccaaa ccattcggta aaaagttgta gggaaaaaag      2280
     aacgtgcaat atagacggat gcattagtaa gcacaatcgt ttattgcacc tgaaaacgaa      2340
     cgacacacct aaaacggaaa caaaaaccgt taatggccaa attaattacc atgcacaaaa      2400
     tcgtagcaag gcgtttttcc aaatactgcc agttactttg tccaatggca ataataaaat      2460
     aaaaacctac attttctttg attccggatc ttccgtgagt ctaatcgatc aaaatatagt      2520
     aaacgaatta aatctgacgg gcgttagaaa tcctgtatcc tttgtttgga ccaacggctg      2580
     cattcaagaa gaaaatgata gccaaatagt gcaggtaaaa gcggaaggtt caaacgggaa      2640
     aacattcctt ttgagaaatt tatgcacgat gaaggcactc gctcttccga tacaatccgt      2700
     caatgctcgt tcactagaag agaaacaccc ctatcttaag ggaactaatt tggactcgta      2760
     tgaaaatgta gctcctacaa tattgatcgg acaaccacac gcctatcttt ttaaggcact      2820
     agaagaaaga tcgggtggat ttaacgaacc cattgcaacc aagacaagat tgggttgggt      2880
     tctgttcggc agcagtcgaa attcccccag atgtcaatat gataacatga accatgtatt      2940
     catactgaat caaatcgatg atgaggagaa atccatcaga gaaatgatgt caaattattt      3000
     ttccactgaa gcattcgggg taaaagttcc cagtaacgca ttgattgcaa aaacagacga      3060
     acgtgcgtta aaaattatgg gtgaaactct aagggctacg gaaaacggct acgagattgg      3120
     ccttctttgg aagaaggaca aggttgaact tccggatagc ttcaaaactg ctcttaaacg      3180
     tttcttacaa caagagcaga aatttgaaaa ggaccaatca ttgaaaactt ggtaccatga      3240
     aaaaattaat gaatacgtag caaagggcta tttaaaaaag ttgagtccgg aggaatatat      3300
     gatcgagaat cctaaaacgt tttatttgcc acattttatt gccataaata aaaataaaca      3360
     aaaacctaga atggtatttg atgcagcagc aaaaattgaa gggatatctc tgaattcaca      3420
     attactatca ggacccgata tgaccgcttc atcacttggc atcaaaatgc gcttccgtga      3480
     aaactccatc gccatagccg gggacatcca ggaaatgttt caccggattg ggattataga      3540
     agaagatcgg agttcacagc gtatagtttc aagagaacgc ccaaacactc cgttaaatgt      3600
     atatgaaatg caagtcatga catttggagc aacctgctca cccgcttgtg cacaatttgt      3660
     gaaaaataca catgcggaaa aatataagga aaaaagccca gaagccgtcg aagctatcat      3720
     ccacaatcat tatgtagatg attatctgga tagcttcgac gatatgggaa aggctgtaaa      3780
     aactgttact gatgtcattc agatacatga tgaagccaat ttcaaaataa gaaactttat      3840
     ctctaattcc aaaacattat taaaacagtt acctgaagat cgtatatcac ctgtgaaaga      3900
     agtcagcctt gatgactcag aaagcgtttt cgaaaaggtt ctgggaatgt actggaacac      3960
     cagagacgac aaattctttt tcaaaataac acctcccaat aaaaatttaa tggaacccac      4020
     caaacgacaa gtactctctt ttattatgag cgtgtatgat cctttaggac taatcgccca      4080
     tattacaatc gaatccaaaa tattaatgca ggatatatgg aggctgggaa tcgattggga      4140
     tgacaaaatc ccaaaagaga tgaataaaag atgggataca tggttaaaca agttatcctc      4200
     cttgcaacac cttcgaattc caagatgtta ttcttactcg aaggcaatat tgaaaagaga      4260
     actgcatgtg ttttgtgacg catcacaaaa cgcgtttgca actgtcattt atatgaggac      4320
     aatctgcgaa gatggtatca atataactat cgtcgcagat aaatcaaaag tagcgcccac      4380
     gaaaattatg tccataccac gattggaatt gcaagcagct gtattaggta cccgcatatg      4440
     tgctacagtt caaaaggaaa taagactgaa aataaatcag atagtttact ggaccgactc      4500
     aaaaacagtc ttaagctgga tcaaatcgga attaagaaag tttaaccagt tcgtccagca      4560
     cagggttagc gaaatactgg atagcactat ggaatcacaa tggcattata ttaatacggc      4620
     agctaatcca gccgatgaag ggactaaaac cactcatgca aagaccatgt ggattgatgg      4680
     tccttctttc ttgaaggaag acgaagatca ttggccggca aattacattg agaaagctat      4740
     ttatgatcca gaattaggaa aagaagaatt gcgtccggta catgcaacga aacatgttga      4800
     tcgaactaag ttggatataa ttaatgtcga atggtgctcc gattggactc ggctgagaag      4860
     agctgtatgt atagcaatga aatataccga ctggctcaaa tcgaaagcat tcaactcaaa      4920
     cttcaacaaa gaaataaccg ccactgacat ggaaaatgca gaaaccctat tgattacaaa      4980
     ggcacaatgg gaaagcttcc ccgacgaaat gactgagtta agcctaaaac aaacagtgga      5040
     caagtcgagt agtatccgta aacttacacc ctttttggat caagatggta ctatgaaatc      5100
     ggcaacacgt tacgaaaatg cgaaatgcgt accatacgga gctagacacc catacatact      5160
     cccagctaaa catcacatct caaacttgat actgaaatgg taccacgaag aatttaagca      5220
     taaaaagttc aagacagccg ttgcggcagt caatcaaaag tatcacatca ttaacataga      5280
     tgcggggatg gaaaaaataa aaaatcgatg tcaacattgc aaaaatgata atgcaaagat      5340
     aaacgcgccg aagatggcac cattgcctga gtgccgatta caaccctacg taaagccatt      5400
     tacccacacc ggtgtggact acttcggtcc atataacgta acgattggcc gtcgaacaga      5460
     aaagcgttgg ggtgcactgt tcacgtgtat gacaacacgg gcagtttatt tggagttagc      5520
     gcatgatctg agcgctgatg cattctttct atgtctaaat tcagtacaga atagacgagg      5580
     aagaataaaa ttcttataca gcgacaacgg cacgaatttt gtaggcgctg acagcgaatt      5640
     aagaaaactt aaacacagac tcgcatcgaa gggaatagaa tggcacttca accccccagc      5700
     agcaccacac tttggcggtg catgggaacg attggtccaa gaagtgaaga gtctcttgcc      5760
     caatcagcca atgccagaac atacgcttcg atctctactt accgaaattg aaaatataat      5820
     aaatagtagg ccacttactt caatatcgct ggacgcgaca gacgacgagc ctcttacgcc      5880
     aaaccacttc ctaattggat gctcaggagg agcagaaccg tcattgaatg atgtttcaaa      5940
     agccgaagca tctagagcgc aatggaaaaa ggctcaactg atggcaaaga cctactggga      6000
     tcggtggtta catgaatatc tgcctacgct ggcaaaaagg acaaaatggt ccgaagcaat      6060
     aaaaaacgta caagaaggag atgtcgtaat gatcgctgac gacgaccaaa aggccagatg      6120
     gaaaaagggt ataataacaa aaacacatat atcaaaggat ggccaggtca gatcggctgt      6180
     cgtaaaaaca gcaaccggag agtatacccg tcctgtaata aaactagccg ttatggatgt      6240
     tagggcgccg gaaattcccg ccgaaggaaa aaataccgga acagaaagta ccaaagaaaa      6300
     caaaacggca acaaaacgga gttccaatca acccgcagat gaggcctgta catcgaaaca      6360
     aagaaaattt atgggaagaa catccgagaa catactgaaa gggtacgaat tcggcaaggc      6420
     aaaaaccata gacgtcgaca aagttaaaga aatagcagca gaaatagcaa agccaaaggt      6480
     aaaaaaggcg aaatcgcgag taagacccgt cacttggatg aactggatgg ttatattgta      6540
     cctagcatgt gtgatgttcg ggaccgcact atcttttgaa ggctcgggat taatcgccta      6600
     cgattgcggt aatcctgagg tgaacctcac aagttactcc ttattagatg tggcttcatg      6660
     tattcctcca ttgaacaact taacgacgaa tgaaatacaa attcaagtac tgcaacgaaa      6720
     cgctaaaagc gatatatgag ctttccaatg caaagtgata ataaaacgaa ctattaaaca      6780
     ctgtggcatg cattctcata cctccgacta cgaaaggagt tacgagtata tagtaaaaga      6840
     gttcacttcc gaagaatgtc gatactctca acagttgggt atagtaaaat taacatatga      6900
     tattcaacta cgcgagctca aacgcaatgc aaccacccgc ggggaaaccc ttatagtcgg      6960
     atccgtgtgg ggtagcaatt gcaaaggagg gacatacaga acgccgatat atacctgggt      7020
     taatgcttta gtttattacg agtatgaaat aactctacat gattacgttg ctaccgtaga      7080
     ttacgaaaac gatgtgatac atttaagaaa cggactgact tgtgtatatt cacatggaag      7140
     atgtctcgac actgaggatg gatatattac atgggacatg gcatcaaata ataaatgcga      7200
     agagacggag tatgaagtga tctacgaagg cattgtaaac aaaaccatga atgaaaataa      7260
     aaacaaacaa attgaaaaag ccaatgttgt ttatagcacg gtttcaaaca cacatctttt      7320
     ttcaataagg gctaaggaac aaacaaaaat atgcggccac gtaggtttta caaccgacca      7380
     cccgcgcata ctcatagtcg atgtgatagg tttcaattcc cctttcagaa ggaaggcagc      7440
     aacagggaaa aacttcgatt tgtttaccta tttcaactcg aagataacct tagttgaaaa      7500
     ttatatcgga caaagcatga cagagcttta taacactgtt atgacggaaa tgtgcaaagt      7560
     agataaggcg ctaatggaga ctaaactcac attagcacgc cttaacccaa ccgaatttgt      7620
     aactagcatt attaaaagat cgggatatac tgccgtagta gcaggagaag tgctacacat      7680
     cttggaatgc aaaccagttt acgtaacacc tcgatctgat gatacttgtt atcaagaaat      7740
     acctgtaaat tataataatc aaactatgtt cattgcccca gtaactcata ttttacaaaa      7800
     aagaggtacg caaattgatt gcacacccct tctaccagcc aaatttcaaa taggtggaag      7860
     atggtataca actgatggtc gtatcagaga agccatctca ccgttgaaac tcacaaccga      7920
     tttattaacg acttggtcat atacacatct accaaactta atgcaaagcg gagtatatga      7980
     tgctgatagc gtagagaaaa tgagaaacat gatttacgag caaggagata gacgagttgc      8040
     atcgaatgtg ttgcacaaaa tattaattgg acaacaacct gaatttcaag gcttccgttt      8100
     cgaagcacta gtttcaaata aagtaatcga aagcataata gaaaaatatt ggaataagct      8160
     aatgtcatgg tcaacccgtt taggcaatat aacctcaaca tttataggat tgtacatgat      8220
     tggtagaatc attaaatttc tgattgatac cataatgcat ggacgcatat tgtacgacat      8280
     atacggtcta ggatggcaac tacttgcgtc attctgggat tctttgacta actttctgtc      8340
     tcacagaaac gctatgaaaa gaacagccgg acaagaaaat aatttacaac ccgaaaaaca      8400
     agaggatgaa gtacttcaag tagatgaaga agaaatttat actcaaatcg cacgtccaca      8460
     cccaactcca tactcgcgga caagtatcca ggtatgagta aatctagatc gatttacggg      8520
     ctccggaa                                                               8528
//
ID   BEL-804_AA-LTR repbase;    DNA;    INV; 782 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-804_AA-I;
KW   BEL-804_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-782
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-782
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2116-2116 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 782 BP; 310 A; 162 C; 135 G; 175 T; 0 other;
     tatcgccgcg agtaattaat caacaagaaa aataacccca gccatagaaa ccaaattccc        60
     gacagcccat cgaagcatag tcgatgtcga taccaaaatg agaaaatgaa ataaaaagca       120
     gagcgcaaaa ctaggacctc cgataacata actttattgc accacttgaa ataggactaa       180
     gcatgcatat gcagatgcac ttgagctagg aaaaaacacg cccacatgtg gcttaggaat       240
     agcatagctt aagatttcat ctctttttgt cattggtaat agataggaat tagattgtaa       300
     gcactacaaa tgttacacaa ttttacattt aataaccacg ccttatctaa ctagcctctt       360
     aggatctgta ggtagaaaat acgaaaatag accaagaaat aagaaaaatc ccagattcga       420
     aagggatatg gaaaattcca tttgaaacaa ctttgtaact caatattaca cttcacgaat       480
     gaaacatgta ggattaagat acatactgta caaactgcaa ataaagatca agttcaaaaa       540
     tcattccaga gtgttctcac taatccgaaa ccggataagg aattttgaaa acagtttctc       600
     accaagtgaa aacttctctc cctaaccgga gaaaaaagta gcttgaagaa acttcaaaac       660
     caggagtgaa aacggtctcc ctaaccggag aacaaagtag cttctgattg aaaataagtc       720
     caaagccaag gcgaaaatcg atccccctaa ccggagacca aaagtagcca ctggcagcga       780
     ca                                                                      782
//
ID   BEL-805_AA-I repbase;    DNA;    INV; 6459 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-805_;
KW   BEL-805_AA-I; BEL-805_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6459
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6459
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2158-2158 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..6458
FT                 /product="BEL-805_AA-I_1p"
FT                 /translation="MATASMSNIGETTSHRCRACNQPDEADSRMVQCDGCN
FT                 HWYHFKCAGVGDSIADESRTYCCAFCSASPAASVSTTASAREAKLRLDMQR
FT                 LAEERELRAKLLAEREKQEKDMQEMAMKLEKERREKAIADLMVLEKEYIDK
FT                 KYQLLQARLEEDDDGKSTRSVSRSHRSVRHGVDKVQEWMNQQPGATTLSSN
FT                 PGGTVPTGLTSVATNVVHPPPRFSASGEQRQAGTVGEISCTTTFGPTFKDL
FT                 ISPVTMAHTGLPVETITSSPSNVQPIPLQQSTPRSLAANIMEPAVVLPTAP
FT                 SDGPYVNPYHGLSFPNTSSIAVSNRPTIQASVAGNLGQPIFSDGTSRAIFG
FT                 ETHNQPTSRFPPSSVANHPMIPPISSVPIGSNSASIPLNPSRPGLVYHSVL
FT                 PGGLAHASALPSGVTHPPLISSVPVMSQSGISSSFSLPSDMTRGIYNWSSQ
FT                 QYPGISVSSYQAPIFSMPGQSSMPPQQLQGPTSQQLAARHVVPKELPPFSG
FT                 NPAEWPLFWSSFDTSTQMCGYTDAENLMRLQRSLKGDARRAVSCFLLHPAN
FT                 VAEVMNTLQSLYGRPDTIIHTLLNEVRATPSPRHDKLETLINFGLAVRNLC
FT                 VHLVSTRQEMHLTNPILLQELVEKLPANIKLDWALYKQRVLVADLRAFAEY
FT                 MNVLVTAASSVTTVMDSSCQKPDRQKGKGKTFVNPHFSDSARLEWRSKDET
FT                 TTEVNASAGKLDRPCVVCKANGHKPKDCDSFKHKNLADRWKVANEVHLCKR
FT                 CLYPHGRWPCKAPVCGVNNCQQRHHRLLHPGEPQSEGTSSTVATTTGTVAV
FT                 HRHLQSKTLFCIVPVLLHANGKMVQTFAFLDSGSDSTLVEDSIVKRLGIVG
FT                 QPAPLCMQWTNGVTRMEEGSQSVQLYISGVDSTKRFVLNGVHTVKNLGLPR
FT                 QSLEFKNLEKDFRHLRGLPVRSYDNAVPGILVGLNNTKVKTTLKLREGKPD
FT                 EPVAAKTRIGWVVFGRKGGSNNESSHHVLHQCSQSSDMALHDLVKDFFRVE
FT                 GAGVSSPTALDSAEDRRAREILEATTIRTSSGRFQTGLLWKYDQVEFPDSR
FT                 PMAERRLQCLERRLQKSPELYCNVKQQIVAYQQKGYAHIATDEELTDTDPK
FT                 RVWYLPLGVVVNPKKPEKVRVVWDAASTVRGVSLNSVLLKGPDLLASLPAV
FT                 LSRYRQKEVAISGDIREMFHQVLIRPEDRQAQRFLWRDHPSLPVQVYVMNV
FT                 ATFGASCSPCSLQFVKNLNADEQAGDFPMGAGAVKDNHYVDDYLDSVDTVD
FT                 EAVQLVNEVRTVHANGGFEIRHWMTNSTEVMERIGETNKETHKNFIVDKCS
FT                 NTERVLGMTWQPKKDVFTFSVQLRANLQNLMAGDAVPTKREALSLVMSVFD
FT                 PLGLVAVVLVHGKVLLQDLWRAGVDWDEAIPAETFIRWKAWIQMLKKLDKV
FT                 NIPRCYFPGYAPQAYDSLELHVFVDASESAYAACAYFRVVDRGIVRCCLVS
FT                 AKTKVAPLRPLSIPRLELQAALMGARLMRTVISNHTLKIHRRTLWSDSTTV
FT                 LSWLQSDARRRTQFVAFRVGEILEVTDIKEWRWVPTKFNVADEATKWGNGP
FT                 NIEPSSRWFSGPTFLYEPEQYWPHRELPLVESHEELRPIFVQSHVVVEQVI
FT                 DFKRFSKWERLIRTVAFVRRFFENCKRKTLCEPLQSTTILNREELREAEFT
FT                 VWRLVQHDAYPDEWALLLKNRNLQPDRRQMIKKSSRLFTKSPFIGEGELIR
FT                 MERRIREANWISDNVKFPVILPKENYVTFLLVDWYHRTFRHANGETVVNEV
FT                 MQKYSIPALRVLVRSVNAHCCWCKVYKAKPQIPRMGPLPDVRLTPYVRPFT
FT                 FVGLDYFGPITVKIGRSNTKRWVALFTCLTVRAVHLEVASTLSTDSCKLAI
FT                 RRFIARRGAPAEIHSDQGTNFQGARRELAEEIRAVNNSLAETFTNALTQWK
FT                 FNPPYAPHMGGAWERLVRSVKVGLNAMPIGRNPDEETLTTVLVEIESMVNT
FT                 RPLTYLTLESSEQEALTPNHFLLLSSSGVNQPALQPVDPRTALRSNWNLAR
FT                 AMLDRFWARWIQEYLPVISKQTKWFNEARPLRVGDLVVIVQDNMRNSWTRG
FT                 KVVRVYPGKDGRVRKADVQTSTGISQRPVTLLAVLDVQESGDGIAEGTSRN
FT                 TGGG"
XX
SQ   Sequence 6459 BP; 1747 A; 1513 C; 1681 G; 1518 T; 0 other;
     gaactttaag aacataaacg ttctaacctc aatcccgtcc gatcgaaagg aaaattgcga        60
     cgatggcaac tgcgtcaatg agcaatattg gcgagacgac gagccataga tgtcgtgcgt       120
     gcaaccagcc agatgaagct gatagccgaa tggtccagtg cgacggttgt aatcactggt       180
     accatttcaa gtgcgctgga gttggggaca gtattgccga tgaaagcaga acgtattgct       240
     gtgctttctg ttcagcatcg cctgcagcgt cagtatcgac aacggctagt gcacgggaag       300
     ccaagttgag gctcgacatg caacgtctag cggaagaaag ggagctgcgt gcgaaactac       360
     tggcagagag ggaaaagcag gagaaagata tgcaggaaat ggcaatgaaa ctggaaaagg       420
     agagaaggga gaaagccatt gccgatctaa tggtactgga gaaggagtat attgataaaa       480
     agtatcagct gctacaggct cgattagagg aagacgacga cggaaagagt accagaagcg       540
     tttctagaag ccatcgcagc gtccgtcatg gcgtagacaa ggttcaagag tggatgaatc       600
     agcaacctgg agcgacgacc ctgagttcca atcctggggg aactgtcccc actgggctca       660
     cgtctgtagc aaccaacgta gtacatccac cacctaggtt cagtgcaagc ggcgaacagc       720
     gacaagcggg aactgtgggc gaaatttcct gtactactac tttcggcccg acgttcaagg       780
     acctcatctc acctgtgacg atggcacata ccggtttgcc agtggaaaca ataacatcat       840
     ctccgagtaa cgtgcagcca ataccattgc agcaatctac tccaagaagt ctagcagcca       900
     atatcatgga gcctgccgta gtactgccaa cagctccgag tgatggtccg tatgtgaacc       960
     cctatcacgg tttgtcgttc ccaaacacct cttctattgc ggtaagtaac cgaccgacaa      1020
     ttcaggcaag tgtagccggt aatttgggtc aaccgatatt cagtgacggc acttcaaggg      1080
     ctattttcgg tgaaactcac aatcagccaa cgagtcgatt tcctccaagc agcgtggcaa      1140
     atcatccgat gattccacca atcagttcag tccctatcgg tagtaattct gcttccatcc      1200
     cattaaatcc ttcacgacca ggccttgtat atcattcggt gctaccaggc ggcctggcac      1260
     atgcctctgc tttaccaagt ggcgttacac accctccctt gatttcaagt gtgcctgtga      1320
     tgtcgcagag tggcatttct tcttctttct ctctaccgtc tgatatgact cggggaatct      1380
     acaattggtc ttcgcaacag tatccgggga taagcgtgtc tagttatcaa gctccaatct      1440
     tctcgatgcc gggacaatcc agcatgccac cacaacagct gcaaggtccg acttctcaac      1500
     aactggctgc tcgccatgta gtgcctaagg agctcccgcc attctcggga aatccggcag      1560
     aatggccact gttctggagc agtttcgaca catccacaca gatgtgtgga tatactgatg      1620
     ctgaaaactt gatgcggttg cagagaagtc tgaagggaga cgccagacga gccgtgagct      1680
     gttttttgct tcatccagcg aacgtagccg aggtgatgaa caccttacaa tcactctacg      1740
     gtcgcccaga tactatcatc catacactgt taaatgaagt acgagccact ccgtcaccac      1800
     gacatgataa gttggagacg ctgatcaact tcggactggc agtgagaaac ctttgcgttc      1860
     atcttgtaag tacaaggcag gagatgcatc taactaatcc gattctgctg caagagctag      1920
     tggaaaagct tcccgcaaat atcaagctag attgggcact ctacaagcag cgtgtactgg      1980
     ttgcagatct acgagccttt gcagagtaca tgaacgtatt ggtcacagcg gccagcagtg      2040
     ttacaactgt gatggattct agctgccaga aacctgatcg tcagaaggga aaaggaaaaa      2100
     cctttgtgaa ccctcacttt tccgatagtg cacggttaga atggcgcagt aaggatgaaa      2160
     caactacaga ggtcaatgct tccgcgggta aattggatcg tccgtgtgtg gtctgcaaag      2220
     ccaatggtca caaaccgaaa gactgcgact cgtttaagca taaaaatctt gctgatcgtt      2280
     ggaaagtggc aaacgaagtg catctttgca aaagatgctt gtatccacat ggacgctggc      2340
     cttgcaaagc cccagtatgt ggcgtaaata actgtcagca acgtcatcac cgcctccttc      2400
     atcctggaga gccacagtcg gaaggaacca gcagcactgt cgctaccact acgggaacgg      2460
     tagcagtaca tcgacatttg caaagcaaaa cactgttctg catagttcct gtgctgttac      2520
     atgcgaatgg aaaaatggtg caaacatttg cattcctcga tagtggttct gattccactc      2580
     tggtggaaga ctcgatcgtg aagcgattgg gaattgtggg tcagccggcc cccttgtgta      2640
     tgcagtggac aaacggagta acgcgaatgg aagaaggatc tcagagtgtt cagctttaca      2700
     tctctggggt agactcaacg aaacgtttcg tcctgaatgg tgtacacact gtgaaaaatc      2760
     tgggtttacc ccgacagtcg ttggagttca aaaatttgga aaaggatttt cgacatcttc      2820
     gtggacttcc cgtaagaagt tacgataacg cggttcctgg aattctagtg ggcctaaaca      2880
     acacaaaggt aaaaacaacg ctgaaattga gagaaggaaa gcctgatgag ccagtagcag      2940
     caaaaactcg cattggctgg gttgtattcg ggagaaaagg cggatccaac aacgagtctt      3000
     ctcaccacgt acttcaccag tgcagccagt ccagtgatat ggcacttcac gacttggtga      3060
     aggatttctt ccgtgtggaa ggagctggag tgtcatctcc aactgctttg gactccgccg      3120
     aagatcgtcg tgctcgtgaa atcctcgagg ctactacaat tcggacttcc agcgggcgtt      3180
     tccaaactgg cctcttatgg aagtacgatc aggttgaatt cccagatagc agaccaatgg      3240
     cggagcgtcg tctacaatgt ctggaaagaa ggctacagaa atcaccagaa ttgtactgta      3300
     acgtgaagca acagattgta gcttatcaac aaaaaggata tgctcacatt gcaacggacg      3360
     aagagctgac agacacggat ccaaagcgag tttggtacct ccccctgggt gtcgtcgtta      3420
     acccgaagaa accagaaaag gttcgcgtag tttgggatgc ggcatcgacg gtgcgaggag      3480
     tatctctgaa ttcggtgcta ttaaaaggac cagatctact cgcttcactc ccggcagtgc      3540
     taagtagata tcgtcagaaa gaagtggcca tcagtggaga catacgggag atgttccacc      3600
     aggtattgat tcgtcccgaa gatcgccaag cacagcgctt cctgtggcgt gaccatcctt      3660
     cgctgccagt tcaagtatac gtgatgaatg tagctacatt tggtgcatcc tgctcgccgt      3720
     gctcactaca gtttgtaaaa aatttaaacg ctgacgaaca ggcaggggac tttccgatgg      3780
     gggctggtgc agtgaaggac aaccactacg tcgacgacta tttagacagc gtagatacag      3840
     ttgacgaagc ggtgcagcta gtgaacgaag ttaggactgt ccacgctaat ggaggcttcg      3900
     agattcggca ttggatgacg aattctaccg aagtgatgga gcgaatagga gaaaccaaca      3960
     aggagacgca caaaaacttc atcgtagaca agtgcagtaa caccgagcgt gtattaggga      4020
     tgacttggca gcctaagaag gatgttttca cgttctcagt tcagctacga gcaaacctgc      4080
     agaatttgat ggccggagat gcagtaccaa ccaaacgaga agcattgagc ctggtgatga      4140
     gcgttttcga cccgttaggg ttggtggctg tggtccttgt tcatgggaaa gttctgcttc      4200
     aagacctatg gagagcaggg gtagattggg acgaggcaat tccggcagaa acgttcattc      4260
     gttggaaggc atggatccag atgttgaaga agctcgacaa ggtgaacata ccgcgttgtt      4320
     atttccctgg atacgcacct caagcgtatg attcgttgga actacatgtg tttgtagacg      4380
     caagcgagtc agcatatgca gcctgtgcgt acttccgtgt ggttgatcgg ggcatcgtac      4440
     gctgttgtct agtttccgca aaaacaaaag tcgccccact tagacctctg tcgattcctc      4500
     ggctagagct tcaagccgct ctgatgggag cccgtctgat gagaaccgtt atctccaatc      4560
     acacactgaa gatacatcga agaacactct ggagcgactc cactacagtg ctgtcttggt      4620
     tgcagtctga tgcacgtcgc cgtacacaat ttgtagcctt cagagttggc gaaatcctgg      4680
     aagtcaccga catcaaggaa tggcgatggg ttccgacgaa atttaacgta gcggacgaag      4740
     ctaccaaatg gggaaacgga cccaatattg aaccctctag ccgctggttc tcaggaccaa      4800
     catttcttta cgagcctgaa caatattggc ctcatcgtga acttccgttg gtagagtctc      4860
     atgaggagtt gcgaccaata ttcgtgcaat cccatgttgt tgtagaacaa gtgattgatt      4920
     tcaaacgttt ttctaaatgg gagcggctaa tacgcaccgt agcgttcgta cgccggttct      4980
     tcgaaaactg caagcggaaa actctatgcg agcctttgca gtctacaacg attttgaacc      5040
     gtgaagaact acgtgaagcg gagttcactg tgtggagact ggttcaacat gatgcgtatc      5100
     cggatgaatg ggcgttgttg ctgaaaaatc gaaatttaca acctgatcgt cgtcagatga      5160
     ttaagaagag cagccgtctt tttaccaaat ctccattcat tggcgagggt gaacttatcc      5220
     gaatggaacg tcgcatccgt gaagctaatt ggatatcgga taatgtgaaa ttcccagtga      5280
     tattaccgaa ggagaactac gtgacgttcc tattagttga ttggtatcac cgtacattca      5340
     ggcatgccaa cggcgaaacg gtggttaatg aagttatgca gaagtactct attccggcct      5400
     tgagagtgct tgttcgaagt gtaaatgccc actgctgttg gtgtaaagtg tacaaggcaa      5460
     aacctcaaat accacggatg ggacctttgc cggatgtacg tcttacccct tacgtacgtc      5520
     cgttcacttt cgtggggttg gattattttg gcccaatcac ggtgaagatc ggccgaagta      5580
     atacaaaacg atgggtggca ctgttcacgt gcttgacggt tcgtgcggtc catttggagg      5640
     tagcatcaac tctttctacg gactcctgta aactggcgat tcggcggttc attgcgcgca      5700
     gaggtgctcc tgcagaaata cattctgacc agggaacgaa cttccaggga gctcggagag      5760
     agcttgcgga agagatacgt gctgtaaaca actcccttgc tgaaaccttc accaacgctc      5820
     tgacgcaatg gaagtttaac cctccatatg caccacacat gggcggagcg tgggagaggc      5880
     tcgtgcgctc cgtaaaagtc ggcctcaatg cgatgcccat aggcaggaat cccgacgaag      5940
     aaaccttaac gacagtgttg gtggaaatcg aaagcatggt gaatacccgt ccattaacct      6000
     atctgaccct ggagagttcg gagcaggagg cactgacacc gaatcacttc ttactactca      6060
     gttcttcggg agttaatcaa ccggcgttac aacctgtgga tcctcgtact gctttgcggt      6120
     ctaactggaa cttagcccgc gcgatgttgg accgtttctg ggcacgttgg atccaagaat      6180
     atttgccagt catctcgaag caaactaaat ggttcaacga agctaggcct cttcgagttg      6240
     gagacttggt agtcatcgtg caggacaaca tgcggaatag ctggacaaga ggaaaagttg      6300
     tacgcgtcta ccctgggaaa gacggacgtg tccggaaggc ggacgttcaa acctctacag      6360
     gtattagtca acgaccggta actctgcttg cagtattgga tgttcaagag tctggcgatg      6420
     gtatagcgga aggaacttcg cgcaatacgg gtgggggcg                             6459
//
ID   BEL-805_AA-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-805_AA-I;
KW   BEL-805_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-451
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-451
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2024-2024 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 451 BP; 169 A; 86 C; 73 G; 123 T; 0 other;
     tgttggcaac ccggtccgac gctttccagc agggattgta aggatgacag atgggagaaa        60
     cgtcacctgt actgtaaaag acgtcaacaa aagacagaag aagaatttgt acacaaacct       120
     aagtgattga acacgttaaa actattttct aaaattactt gaagtttcta actattattc       180
     ttgaactatt gtaagtaact aaaatgaatt tattaaaacc tattactaaa cattgaatta       240
     tacatgcagc tactacataa acattgatat acgactgtta cattacgacg gagaacacat       300
     gtggaagact tatgttgtaa gtactaaaat tgttaaaact taaacctaaa ccatgcattg       360
     acgaaattac aaattatagc ttaaagctta ctcaaccata aaacccgagt ttgctcaaga       420
     agcgtccgaa accgtctccg ctcccgtaac a                                      451
//
ID   BEL-806_AA-I repbase;    DNA;    INV; 6444 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-806_;
KW   BEL-806_AA-I; BEL-806_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6444
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6444
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2159-2159 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1034..6358
FT                 /product="BEL-806_AA-I_1p"
FT                 /translation="MPVTTKRESTSLKTLMTKLEEYQNAFDDIWEFVEDIP
FT                 TDVVAFDVSLRLERLDELRDRIEDTIIEVKSHDSYSDEKYPLDNKRKDFSV
FT                 RYYKTKSILMEQLKQLQEPTTTLDRSFRGGDTLGGSSLDHARLPQIKLQAF
FT                 NGDINEWLSFRDLFTSLIHWRTDLPEIEKFHYLKGCLQGEPKNLIDPIQIT
FT                 NTNYQVAWNLLVERYSNSKQLKKRQVQILFDLPVLVKESVVDLHKLVDSFQ
FT                 RAIQTLDQIIQPGDYKDLLLINLLISRLDPITRRGWEEFSSSKDQETLKDL
FT                 TGFLQRRIGVLEALPMRTVELKGAQKPTFSTLATKPRSTVVKTSFNTAQEP
FT                 SKGCVSSSADHLLFQCPVFHRMTSSDKEALLRSKGLCRNCLKQGHQARDCR
FT                 SKFSCRRCRGRHHTLVCFKPERDINSGAGSSRSAINETPPPQEAVSNVPQQ
FT                 ANVAASDSTASTSAHSYSSQALLATAVVIIEDDYGNQYPARALLDSGSESN
FT                 FLTEQLSQRLKVSRDSVDISVIGIGQSTTKVKQRIRTVLRSRVSDFSRELS
FT                 FLILRKVTADLPTTSIDPAGWKIPDGIELADPTFFISKTVDLVLGIEAFFD
FT                 FFVTGRQLSLGGQLPTLTESVFGWVVCGGTTLSRQFPVTCTVSASKELERM
FT                 VARFWSCEEIESSRTYSPEQTRCEQLFSNTVQRDASGRYTVFILKDGDDFK
FT                 TLGESREIAFRRLQATERRLARDARLQKQYTSFMGEYLALGHMQQVDDSHE
FT                 TVKRCYLPHHPVVKEASTTTKGRVVFDASCKTSTGISLNDTLHVGPVIQDD
FT                 LRSIILRCRTKQIMLVSDIEKMFRQINITPEDKPLQSILWRQHPTEDVATY
FT                 ELGTVTYGTKSAPFLATRTLHQLGMDEGKHFPLAAKSILEDTYMDDVITGA
FT                 DTIEEATDLRKELVRMLQCGGFRLRKWATNEKAVIEGLPQQELAIPDTTEI
FT                 DLESDTSVKTLGLTWVPAKDEFRYQFNIPSLDSSESITKRNILATVASLFD
FT                 PSGLLGPTITMAKIFLQELWIWRSEEGHKLDWDDPVPSTVGERWRRFHQVL
FT                 PMLNEVRINRCAIIPEALSLELHCFSDASQKAYGGCVFIRSRNAENRTFVS
FT                 LLASKSKVAPLRCQTIPRLELCGALLTAQLFEIVQKSIKMDIHAFFWTDST
FT                 CVLRWLQASPVTWTTFVANRVAKIQTITERYQWRHVAGVQNPADLISRGVS
FT                 PVDLIQNCFWWHGPTWLMQHESTWPKTSELTEEDDQISERRSATLTATAKS
FT                 SNFCQWYISRFSDYCSLIRCTAIWKRWIKRLHNRSSEPYTGFLNTSELRDA
FT                 ENTIVRLVQHETFPDECISLSHHRLVSRKSPLRWFNPYLSEDQLLHVGGRL
FT                 RNSEEPERAKHPLILPARHPLTRLLFEHYHRILLHAGPQLLLSSVRLKFWP
FT                 LGGRNIARQVVHRCMRCFKAKPTPVKQFMGELPSSRVTMARPFSRTGVDYF
FT                 GPVLVRPGPRRVAVKNYVAVFICMVTKAVHLELVSDLSTDRFLQALRRFIG
FT                 RRGRCTDIFSDNGTNFVGAKNRLKELFALLNDDQHKESVDKFCTNQGIRWH
FT                 FNPPNAPHFGGLWEAAVRSTKHHLLRVVGEHAMSTEDFQTLLIQVESCLNS
FT                 RPITPLSDDPNDLEALTPGHFLIGQSLQELPEPDWRNTPINRLNLFQQLQQ
FT                 KFQGFWNRWRTEYLSQLQGRTKRLGQEVEIEVGKLVVVCDRNLPPMRWKMG
FT                 RIVDVHPGIDKVIRVVTLRTKDGLLKRPVEGICLLPILESQEITDIPTERD
FT                 PTST"
XX
SQ   Sequence 6444 BP; 1863 A; 1416 C; 1490 G; 1675 T; 0 other;
     taatggtcct tcgaaccgga tgagtgaaac ccggaaaaca tatgaagatt tgaacaacga        60
     ctacatagac gccatcgaat agccaagcca gttagaaaga gccatatcgt atctgcattg       120
     tgctgtattg tatgccaccg aagccatcag ggaacgttgg aaacgcggaa caattgtcgc       180
     cgttgagcca ttttgcaccc gccttgcctc ccatgagaga cgattacgcc atcgaataca       240
     cttgagagaa gcaattgatg atttggacat tcgtaggaat tttgatcatc taccaaggac       300
     ggccacggaa gcttgttgca agactactga gtctgcgcaa cttcctgttt tcacaggtta       360
     gcactttgaa ctcagtatat gtcttggccg aagccaattc ttggtcgata ctaattccac       420
     catttcgata ttcatcttca atctgttcgc gcaactcatt catcgaatga cgaacgagac       480
     tgggtcgtca tccacaaggg tgcaaatacg attgctgatc tacctggtaa ctgtgtgagg       540
     gaccatccag actgacgtag agtggctgtc gaggacacat tcaacgaaga ggcagtacaa       600
     cggtatttct ggccagctga ttgtggtgtg gaaatttcac tggatttggg caatcgagat       660
     gtcgatcata tttgcgtatt cgagtgcttg ttccttggag tacgactgaa gctattaacc       720
     taatggttgg cttgtgctgc tgttagtttc tccaggtgag gcaacagtat atgcccaacc       780
     gtggctaggt ttttttgaat gctacataaa ccttatcctt cctctttgat gcaacgtgtt       840
     ttacccattc cggagttgtt cgtggttggt gatcgtgata cgacttgaat cgatcaagct       900
     tcaaggcaac gtactactag ttttctagcc aggtaaataa tactggacag tatatgcctt       960
     gtcgaagcta ggatctactg cagcattcta cattgaattt tttgtattta caatctatca      1020
     ctacgagttc accatgccgg tgacaacaaa gagggagtcg acatctttga agacactgat      1080
     gaccaaacta gaggagtacc aaaatgcctt cgacgatatt tgggagttcg ttgaggacat      1140
     tccaactgac gttgttgcct ttgatgtgtc ccttcgctta gagcggcttg atgaactgag      1200
     ggacaggatc gaggatacca tcatcgaagt aaaatctcac gacagttaca gtgatgaaaa      1260
     gtacccactc gacaacaaaa gaaaggactt cagtgttcga tactacaaaa ccaaatccat      1320
     cctcatggag caacttaagc agcttcaaga accgacgact actctggatc ggtcatttcg      1380
     tgggggagac acattaggag ggagtagctt agatcatgca cgtttaccgc agattaagtt      1440
     acaagctttc aatggggata tcaatgagtg gttaagtttt cgcgatctgt ttacctcgct      1500
     gatacactgg cgaacagatt tgcctgaaat tgaaaaattt cattatttaa aggggtgtct      1560
     ccagggtgaa ccaaagaacc tcattgatcc gattcaaatc accaatacca attatcaggt      1620
     agcttggaat ctgctagttg aacgttacag taacagtaaa cagttgaaga aacgacaagt      1680
     gcagatactt ttcgatttac ccgtgcttgt gaaggagtca gtagttgatt tacataaact      1740
     tgtggatagc ttccaacgag ctatacaaac cctcgatcag ataatccagc ctggagacta      1800
     caaggacctt ctcctgatca accttctgat ttcgcgcctg gacccaataa caagaagagg      1860
     ctgggaggag ttttcatcga gcaaagacca agaaactctc aaggacttaa ctggatttct      1920
     tcaacggcga ataggggtgc tcgaagcgtt acccatgcga acggtggaac tcaagggggc      1980
     acaaaagccc acattttcaa ctctagcaac gaaaccaaga tcaacggtag taaaaaccag      2040
     ttttaacact gcgcaagaac ctagtaaggg ttgcgttagt agttcagcgg atcatttgct      2100
     cttccaatgt ccggtgtttc atcggatgac ttcgtccgac aaagaagctt tactacgttc      2160
     taagggtctg tgtcgtaatt gtcttaagca aggtcaccag gcgagggatt gtcgttcgaa      2220
     attctcatgt cgaagatgta ggggacgaca tcatacgcta gtttgtttca agcctgaaag      2280
     agacatcaac agcggtgcag gatctagcag aagtgcaatc aatgaaacac cccctcctca      2340
     agaagcagta tccaatgttc cccagcaagc caatgtggct gcctcggatt ctactgcttc      2400
     cacatcggct catagttact cgtctcaggc actgttagca acagcagttg tgatcatcga      2460
     agatgattac gggaatcagt atccagcacg agctctattg gattcgggat cggagagtaa      2520
     ctttctcacg gaacagttga gtcaacgatt gaaggtttca agagattctg tagacatttc      2580
     agtcattgga atcggtcaat caacgactaa ggtcaaacag cgaatccgaa cggttctacg      2640
     atccagggtt tcggattttt cgcgagaact cagcttcttg attcttcgta aggtaaccgc      2700
     agatttacct actacttcga ttgatccagc aggatggaaa attcctgatg gaatcgaact      2760
     agctgaccca acgttcttta tatctaaaac cgtggattta gtacttggca ttgaggcgtt      2820
     cttcgacttt tttgtgacag gacggcaatt atcgttgggg ggacagttac caaccctgac      2880
     tgaatcagtt tttggatggg tcgtttgtgg aggaacaaca ctgtcaagac agtttccggt      2940
     tacatgtact gtatcagctt caaaggaatt ggaaaggatg gtggctcgat tttggtcctg      3000
     tgaggagatc gagtcttcaa gaacttattc accagagcaa acccgctgcg aacaactttt      3060
     ctcaaatacg gttcaacgtg acgcaagtgg gcgatatact gtattcattt tgaaggatgg      3120
     agacgacttc aaaacattgg gcgaatctcg agaaatcgct tttcgacgtc ttcaagcaac      3180
     ggagcgaaga ctggctaggg acgccagact acagaagcag tatacttcat ttatgggtga      3240
     atacttagca ttagggcaca tgcagcaagt agacgattct catgagacgg taaaacgttg      3300
     ctatttaccg catcatccgg tggtcaagga ggcaagcacc accacaaagg gccgcgttgt      3360
     tttcgacgca tcctgtaaga cgtctacggg aatttcatta aacgatacgt tgcatgttgg      3420
     gcccgttata caagatgatc tgcgatccat aattttacgc tgcagaacga agcaaattat      3480
     gctggtgtcg gacatcgaaa agatgtttag acaaatcaac atcacaccag aagacaaacc      3540
     acttcagtcc atactctggc gacagcatcc taccgaagat gttgctacgt acgaacttgg      3600
     tacagttaca tacggaacaa aatcggcacc gtttttggct acacgaacgc tgcatcagct      3660
     tggaatggat gaaggcaaac acttcccgtt ggcagcaaaa tctattctgg aagacacata      3720
     catggacgac gttataacag gcgcagatac gattgaagaa gcgacagacc tacgaaagga      3780
     actcgtaagg atgctacagt gcggaggttt tcgtcttagg aagtgggcta ccaacgagaa      3840
     agcggtcatt gaaggattgc cacaacaaga acttgcgatt ccggatacaa cagaaattga      3900
     tttggaatct gatacatctg ttaagacact gggacttacc tgggtaccgg caaaggatga      3960
     atttcggtac caattcaata ttccatccct agattccagt gaatcaatca ccaagcgtaa      4020
     cattttagca accgtagcaa gcttgtttga tccttccggt ttactaggac ctacaattac      4080
     catggcgaag atcttcctac aagaattgtg gatatggcgg agcgaggaag gacacaaact      4140
     tgattgggat gacccggtac cttcaacggt gggtgagcgt tggcgtagat tccatcaagt      4200
     actaccaatg ctcaatgaag ttcgcatcaa ccgatgcgca ataattcccg aagcgctatc      4260
     attagaactt cactgttttt ctgatgcttc tcagaaggcc tatggtggtt gtgtctttat      4320
     tcggagtaga aatgcagaaa atagaacatt tgttagtcta ctggcatcca aatcaaaggt      4380
     ggcaccatta aggtgtcaga caataccccg actagaactt tgcggagctt tactaactgc      4440
     acagctgttt gaaatcgtcc agaagtcaat caaaatggac atacatgcgt ttttttggac      4500
     agattcaacc tgcgtacttc gttggcttca ggcgtctcca gttacctgga ctacatttgt      4560
     ggcaaatagg gtagccaaga tccagacaat cacggaacgt tatcagtggc gccatgtagc      4620
     aggtgtccaa aacccagcgg atttgatttc tcgaggagtt tctccagtag acctgattca      4680
     aaactgtttt tggtggcacg gtccaacctg gttgatgcaa cacgaaagca cttggcccaa      4740
     aacttcggaa ttaacggaag aagatgatca gatatctgaa agacgatcag caactttaac      4800
     agcaacagca aaatcatcga acttctgtca gtggtacatc agcagatttt ctgactactg      4860
     tagtctaatc cgctgcacag caatatggaa aagatggata aagcgactgc ataatcgctc      4920
     gagtgagcct tatacaggat tccttaatac ttcagagcta cgcgatgccg aaaacactat      4980
     cgtacgtttg gtccagcatg aaacatttcc cgatgaatgt atttcgttat cacatcacag      5040
     gctagtttct cgaaaatcac cactaaggtg gtttaatcca tacctttctg aagatcagct      5100
     actacacgtg gggggaaggc ttcgtaattc cgaggaacca gagagagcta aacacccact      5160
     aattttgcca gcacgccatc cattgacacg tctgcttttc gaacattacc accgtattct      5220
     attgcacgct ggacctcaat tgttgctcag ctccgtccgt ttgaagtttt ggcctttagg      5280
     aggaaggaat atagcgcgcc aagtcgttca tcgttgcatg agatgtttca aggcaaaacc      5340
     aactccggtg aagcagttca tgggtgaatt gccatcgtcc agagtcacca tggcacgccc      5400
     attttcaaga acaggcgtag attattttgg gccagtcctt gtacgtcctg gtccacgacg      5460
     tgttgcggtc aaaaactatg ttgctgtatt catttgtatg gtaacaaagg cagtacacct      5520
     tgagctcgtt tcggatttgt ctactgaccg ctttcttcag gcactgcggc gattcatagg      5580
     cagaagaggg agatgtaccg atattttcag cgataacggt accaattttg tcggagcgaa      5640
     gaacagactg aaggaattat tcgctttact gaacgatgat caacacaagg aatctgttga      5700
     caaattttgc acaaatcaag gcattcgatg gcatttcaac cctccaaatg caccccattt      5760
     tggagggtta tgggaggccg cggtgagatc tactaaacat caccttctga gagttgttgg      5820
     agaacatgcc atgtccaccg aagattttca aacgctacta attcaagttg aatcatgcct      5880
     gaattctcga ccaattacac ctctctctga tgatcccaat gacctagagg ccctaacacc      5940
     agggcatttt ctaataggcc aatcactcca agaactccct gagccagatt ggcgaaacac      6000
     gccaataaac cggctaaatc tcttccaaca actgcaacag aaatttcaag ggttttggaa      6060
     tcgatggcgt acggaatatt tgagtcagct ccaagggcgt actaagcgtc tgggtcaaga      6120
     ggttgaaata gaagttggca aactcgtagt ggtatgcgac aggaatttgc caccgatgcg      6180
     atggaaaatg ggaagaatcg tggatgttca cccaggcatt gataaggtaa tacgagttgt      6240
     aacattgaga acgaaggatg gcttactcaa acgaccagtg gaaggcatat gtttgctacc      6300
     aatattggaa tcacaagaaa ttactgatat accaacagaa cgagacccaa catccacata      6360
     atcacgaagt caagatcacg agcattcgaa gagggttttt tttttatttc gtttcagaaa      6420
     tcgcgatttc agggtgggcg agaa                                             6444
//
ID   BEL-806_AA-LTR repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-806_AA-I;
KW   BEL-806_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-681
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-681
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2025-2025 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 681 BP; 207 A; 115 C; 158 G; 201 T; 0 other;
     tgttggctcg agaaattccc atcgaaatac aaccctgatt tacgaccaac aaccagcaat        60
     cgccacaata ggtattgtac aaggcagacg gtcctaatgt ttacgtctgg gtcattgttt       120
     gctggacttt ggcgatcact actggtagac gatagggata ggtaataggc agtctgaaat       180
     gatatgttta cgtgagattg agtaggttta gcaagagaga cttgattagc attgagaaga       240
     gtacgaaatc acatgtcgga ctaatgacgt cattgttctc ttaaattatt agatattaag       300
     gatttcgaat aacgagggaa agtttagttg cgaacagatc gtcggggata taacaccacc       360
     atggtagagc catgttgttg aatttctgtt aatttataaa aatacatgta gtctaagatg       420
     aagttttact caagtccaga ataaacgtcg tgtgtatagt gcgatattgt gtttgccatc       480
     aatcgtcctg ttagaatttc taaatatact accgaaagaa gcctcaagaa gccactgtgc       540
     cgatacgaat atgaagaatt cccatgatgc tgatccaatg atggtgcggt gatttagcag       600
     ttgtagttta ttatacgttc gatgttggtg cgctgtatgc ttaatccatt gaagtcgaag       660
     gtgaacggtt cagacccaac a                                                 681
//
ID   BEL-808B_AA-I repbase;    DNA;    INV; 5760 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-808B_;
KW   BEL-808B_AA-I; BEL-808B_AA-LTR; BEL-146_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5760
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5760
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2156-2156 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other. LTR portion is the
CC   same as BEL-146_AA-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..5737
FT                 /product="BEL-808B_AA-I_1p"
FT                 /translation="MSNRRGNVPRVDVSCGVCREPDDSRMVCCDDCGGWFH
FT                 FKCVGVDEGIEEVDWSCTSCEARRAAQGTPTHLTVPAQGGAAKTSIGDQEQ
FT                 QNKQLASFQKRLEQMQRSFQEQQQSYEKLLAQKDQEMKNAVNDLQHQFQHR
FT                 LEKREAEIRSELFAPITVVPPSANSTTLGGETRTAADVSKVIERIEQQLQE
FT                 MAKKQELETKRLEGRLRAMEIGNSDQAGANSSDLNVNAHAFVPHHHSGLSS
FT                 MAGTHELSRSQLAARQAVAKELPIFTGNPEEWPLFIATYDSTTRMCGFSDE
FT                 ENLLRLQRSLKGKALEVVRSRLLHPAGLGGVISTLRTLFGRPEVIVHSLVS
FT                 KIREMPAPKTEKLGTLIDFGVAVQNMCATIVACGLNEHLCNVALLQELVER
FT                 LPPTIKLDWAKHRQTLQVVTLSDFSTWLGTLVEAACVVTVPSSISTNIYKS
FT                 EKRSRKEELHFHHEANSSQTSSPASAPKIASKPTSKQCVICQGGCSSVGSC
FT                 KAFRDMSISGRWTALKHNKLCRKCLMKHFGACTVKQACGRNGCTYMHHELL
FT                 HDDSRYQRQENSQPSAPQTAAESHTETCNTHMSAISQVLFRYVPVLLHGRG
FT                 KSVRTFAFLDDGSSATMMEHDLLKELELEGESYPLCLEWTADHQRQEINSV
FT                 MLALAISGAHESNTYWIPKVHTVKNLSLPRQTLAMEELMRQYNHLKDLPAV
FT                 SYRNVRPRILIGMDNIRLGHALDSREGGINEPIATRTRLGWIVFGPCSTAV
FT                 QAVTDFTGHHSFHLCQCSEQKDIELHNAVKAYFSLESQGITSPIKPLLSKD
FT                 DERAERLLVSLTHLKEKRYETGLLWRYDDVRLPDSKSMAMRRLVCLEKRMQ
FT                 REPQLAEALKEKIRDYERNGYIEKLTESQLSERFPRVWYLPIFPVVNPNKP
FT                 GKLRIVWDAAAKVAGTSLNSFLLSGPDQLTSLPSVLRRFREYRIAVTGDIR
FT                 EMFHQVMVNKDDQQCQRFLWRDGENDRSPDVYAMKVMTFGATCSPSCAQYV
FT                 KNHNARRFLEQFPRAAEAIVDEHYVDDMLSSEETEEDAVKLAKDVRFVHAE
FT                 AGFEIRNWLSNSKRVLQELEAKPGEKSLNLSSELGTEKVLGMWWCTATDTF
FT                 TFKVSPRISADLLQGRIVPTKRQILSTLMMIYDPLGLLSNFLMFLKMLLQE
FT                 IWRSRVDWDDQIEDEQFQKWGRWLRVLPQVENVSVPRCYRLKTSIGQQNTI
FT                 QLHTFVDASENGYAAVAYLRFEENNMVECALVGAKARVAPLRFMSIPRLEL
FT                 QAAITGARLSNDVMETHKLKPVQRFFWSDSRDVLCWLNSDHRKYNQFVAAR
FT                 VSELLELTETNEWNWISTKLNVADDATKWQKSPDLSPTSRWFHAPDFLWKP
FT                 REQWPSPPSNCEETAEEMRSRTLHHFTQPALFRWEDFSKWSDLLHRVAYVR
FT                 RYTANLRKKLAENSIVTGPLMQEELKAAELLIFKMVQDAEFAPEIGLLEES
FT                 KHSSRSKPLPKNSSLYKLSPYLDGDGLLRMKGRIDACEAVDECTKHPILLP
FT                 KRHTVTDLIIASVHQRYCHMNHQTALNDIRRRFYVPQLRSMYNRVRNRCQL
FT                 CKNRHTKPAAPEMSALPPARLKAFCRPFSYIGIDYFGPMNVVVGRRIEKRW
FT                 GVLITCLTVRAVHIEVANSLTTDSCILALRNFIARRGTPLEIISDRGTNFV
FT                 GASRELKEALQQVNQDKLMEHFVTADTKWSFNPPASPHFGGSWERLVQTVK
FT                 KALKHTQLTRTPTDEILRNMLTEIELIVNSRPLTELPLDDEHAQSLTPNHF
FT                 LLGSSDGSKPPIAFDDSSYALKHTWKTSQVYANRFWRRWVSEYLPTLTRRT
FT                 KWFTRVKPIAEGDIVVIVDETLPRNCWPKGRVVRTILSKDGQVRRAVVKTA
FT                 TALLERPAVKLAVLDVGATVSTSDQ"
XX
SQ   Sequence 5760 BP; 1545 A; 1397 C; 1587 G; 1231 T; 0 other;
     ttttaaaaaa tccgtttagt tcgcgatcgg gaaggctgca aaaatgtcaa atcgtcgggg        60
     taacgtgccg agggtcgatg tgagttgtgg tgtgtgcaga gaaccggacg atagccggat       120
     ggtgtgctgt gatgactgtg gcggatggtt ccattttaag tgcgtaggcg tcgatgaagg       180
     gatcgaggaa gttgactgga gctgcacatc gtgcgaagca aggcgggcag ctcagggcac       240
     tccgacccat ttgacagttc ctgcacaggg tggagctgcc aagacatcga tcggcgacca       300
     ggagcagcag aacaaacaac tcgcatcgtt ccagaagcgg ttggagcaga tgcagcgtag       360
     tttccaggag cagcagcagt catacgagaa actgctagcg caaaaggacc aggagatgaa       420
     gaatgcggtg aatgacttgc aacaccagtt tcaacaccgg ttagagaaga gagaagcaga       480
     aatccgatcc gaattgtttg ctccaataac tgtggttccc cctagtgcca attccaccac       540
     gttaggaggt gaaactcgta cagccgcaga tgtgagcaaa gtaatcgaac gaattgaaca       600
     gcaacttcaa gagatggcga agaagcagga actggagaca aagcgccttg aaggacgatt       660
     gagggcgatg gagattggca acagcgacca agcgggggca aattccagcg acctgaacgt       720
     aaacgcgcat gcatttgttc cgcatcatca ttctggtctt tcgtcgatgg ctggtacgca       780
     tgagcttagc aggagtcaac tcgctgcgcg acaagcagtg gcaaaagagc ttcccatttt       840
     cactggaaat cccgaggagt ggccgttgtt cattgccacc tatgacagca ccacaagaat       900
     gtgcggcttc agcgacgagg agaaccttct tcggcttcag cggagtctga aaggaaaggc       960
     tctcgaggtg gtaaggagta gactgttaca tccagccggg cttggaggag tgattagtac      1020
     attacgtacc ctgtttggtc gtccagaggt aatcgtccac tcgctagtta gcaagattcg      1080
     ggagatgcct gcgccgaaga cggagaagct tggaactctg atcgatttcg gagtggcagt      1140
     ccagaacatg tgtgcgacaa tcgtggcctg cggtctgaac gaacatttgt gcaacgtggc      1200
     gcttcttcaa gagctggtgg agagattgcc accaactatc aagctcgact gggcgaagca      1260
     tcggcaaacg ctgcaagtgg tcacgctgtc agacttcagt acctggttgg gtacgcttgt      1320
     agaggcagca tgcgtagtaa cggttccatc atccatcagt acgaatatat acaagtcgga      1380
     aaagcgtagt cggaaggagg aattgcattt tcatcacgaa gccaattcta gccaaacatc      1440
     atccccagca agtgcaccga agattgcgtc gaagccaacc agtaagcagt gcgtcatatg      1500
     ccaaggagga tgcagtagtg tgggatcgtg caaagctttt cgtgatatga gtattagtgg      1560
     gcggtggaca gcgctgaagc acaacaagct gtgccgcaag tgccttatga aacattttgg      1620
     ggcctgtaca gtgaagcaag catgcggtag aaacggttgc acgtacatgc atcacgagct      1680
     actacatgac gattccagat accagcgaca agagaactct caaccgtcag ctcctcaaac      1740
     cgctgcggaa tcgcataccg agacgtgtaa cacccacatg agcgcaatca gtcaagttct      1800
     tttccgatat gtcccggtgc tgcttcacgg aagaggaaag tccgtacgta ccttcgcctt      1860
     tttggacgac ggctcatcag caacgatgat ggaacacgat ttgctgaagg agctagaact      1920
     tgaaggtgaa tcgtaccctt tgtgcttaga atggaccgcg gaccatcagc gtcaagaaat      1980
     aaattctgtg atgctggcgc tggcgatttc cggagcgcac gaatcgaata cctactggat      2040
     ccccaaggta cacaccgtga aaaatctctc tctaccacga caaacactcg cgatggaaga      2100
     attaatgcgg cagtataacc atctgaaaga tttgccagct gtttcatacc gtaacgtccg      2160
     gccacgaata ctcattggaa tggacaatat tcgcctgggt catgcgctag atagcagaga      2220
     aggaggaatc aacgaaccga tcgccaccag aactcgtcta ggctggatag tgttcggtcc      2280
     ttgctctaca gcagtccaag cggtgacgga tttcactggg caccacagct tccacttgtg      2340
     tcagtgcagt gagcagaagg atatcgaact gcacaacgcc gtaaaagcct atttttcgct      2400
     ggagagccaa ggtataacga gccccatcaa accgctatta tcgaaagacg acgagcgagc      2460
     tgaacgacta ctggtatcgc tgacgcactt gaaggagaag cggtacgaaa ccggtttgtt      2520
     gtggcggtac gatgacgtcc gacttccgga cagcaagtca atggccatgc ggcgactggt      2580
     atgcttggag aagcggatgc aacgtgaacc gcaactggct gaagcgctga aggagaaaat      2640
     ccgggactat gaacggaacg ggtatatcga gaagctaacg gagagccaac tgtcagagcg      2700
     tttcccacgc gtatggtatc ttcccatttt cccagtggtg aatcccaaca agccggggaa      2760
     attacgtatc gtgtgggatg cggcagcaaa agtggcggga acgtcgttga actctttcct      2820
     gctgagcggt ccagatcaac tcacttccct tccatcggta ttgcgtcgtt tcagagaata      2880
     ccggattgcc gttaccggcg atattcggga aatgttccac caagtgatgg tgaataaaga      2940
     cgaccagcaa tgtcagcgat tcctatggcg tgacggggag aatgaccgaa gtccagatgt      3000
     ctacgcgatg aaagtaatga cgttcggggc tacgtgttcg ccaagctgcg cgcagtacgt      3060
     aaaaaaccac aacgcgcgaa gatttctgga gcaatttccg agggccgcag aggccattgt      3120
     cgacgaacat tacgtcgacg acatgctttc tagcgaggaa actgaagaag atgctgtgaa      3180
     gctggcgaag gatgttcgtt tcgttcacgc ggaggctgga ttcgaaattc gtaactggct      3240
     gtcgaactcg aaacgcgtac tgcaagaact ggaagcgaaa cctggcgaga aaagcttgaa      3300
     cctttccagc gagttgggaa cagagaaagt ccttggcatg tggtggtgta ccgccaccga      3360
     tacgttcacc tttaaagtat cgccaaggat tagtgcggat ttactccagg gtcgcatcgt      3420
     gcctactaaa cgtcagatct taagcacgtt gatgatgatc tacgatccgc tgggacttct      3480
     gtcaaacttc ctgatgttcc tgaaaatgct gctgcaggag atttggcgaa gtcgcgtcga      3540
     ctgggacgac cagatcgaag acgagcagtt ccagaaatgg gggaggtggc tgcgagttct      3600
     gcctcaggtg gagaacgtta gcgtgcctag gtgttaccga ttgaagacca gtatcggaca      3660
     gcagaacaca atacaacttc atacgtttgt agatgcgtcg gaaaacgggt atgcagcggt      3720
     agcgtatctg cgattcgaag aaaacaacat ggtggaatgc gcgcttgtcg gcgcgaaggc      3780
     acgagtagct ccattgcgat tcatgtcgat ccctaggcta gaactacagg cagcgataac      3840
     cggagctcgt ttgtcgaacg atgtcatgga aacccacaag ctgaagcccg tacaaagatt      3900
     tttctggtca gattctcgtg acgtactctg ctggcttaat tcagaccacc gaaaatacaa      3960
     ccagttcgta gcagcgcgtg tcagtgaatt gctggagctg acggagacga atgagtggaa      4020
     ctggatttcg accaaattaa acgtagccga tgatgctaca aagtggcaga agtcaccaga      4080
     tctgtcgcct acaagtcggt ggttccacgc tccagatttc ctgtggaagc cgagagagca      4140
     gtggccttcc ccaccgtcaa attgcgaaga gaccgcagaa gaaatgcggt cgcggacgct      4200
     ccatcacttt acgcagcctg cgctttttcg ttgggaagat ttttcaaagt ggagtgatct      4260
     gttacatcgt gtggcatatg tgcgacgata tacggcgaat ttgcgtaaaa agctggcgga      4320
     aaactcaatc gtcaccggtc cgctaatgca ggaggagttg aaggcagcag aattgttgat      4380
     tttcaagatg gtgcaggatg ctgagttcgc ccccgagatc ggtctactag aggagtcaaa      4440
     acattcatcg agaagtaagc cgttgccgaa aaatagctcg ctatataagc tgagtccgta      4500
     cctggacgga gatggattac tgcgtatgaa aggccgtata gacgcctgcg aagctgtaga      4560
     cgagtgtacg aagcacccga ttctgctacc caagcgccac acggtaacgg atctgatcat      4620
     tgccagcgtt caccaacggt actgtcacat gaatcaccag actgccctca acgacatccg      4680
     acgaaggttc tacgtgcctc aactccgctc catgtacaat cgtgtacgaa atcgatgtca      4740
     actctgtaag aaccgccaca cgaagccagc tgcgccggaa atgtctgctc ttccacctgc      4800
     acgattgaaa gccttctgcc gcccattctc ctacattggt attgactact ttgggccgat      4860
     gaacgtagtt gttggccgga ggatcgagaa acgttgggga gttttgatca cctgcctcac      4920
     cgtgcgagcc gtgcacatcg aggttgccaa tagcctcact acggactcgt gtatcctcgc      4980
     ccttcgtaac ttcatcgcca gaagaggcac tccattggaa attatcagcg atagaggtac      5040
     taacttcgtc ggagccagcc gggagctaaa ggaagcgctg cagcaagtga atcaggataa      5100
     gctgatggaa catttcgtca ccgcagacac taagtggtcg ttcaacccac ctgcatcccc      5160
     gcattttggc ggatcgtggg aacgcctagt acagacggtg aagaaagccc taaagcacac      5220
     acaactcaca cgcacaccca cagacgaaat actgcgaaac atgttgaccg agatagagct      5280
     gattgtcaac tcacgtcctt tgacagaact gcccttggac gacgagcacg cacagtcact      5340
     gacaccgaac cactttttgc tcgggtcatc agacggttca aagcccccga tcgcgtttga      5400
     tgacagtagc tacgccctca agcatacctg gaagacatct caagtctacg ccaaccgatt      5460
     ctggcgacga tgggtatccg aatatctacc aacccttacc cgaaggacaa aatggtttac      5520
     ccgcgtgaag cccatagcgg aaggggacat cgtggtcatt gttgacgaga cgttaccaag      5580
     aaactgctgg ccgaaaggtc gtgtggttcg caccatccta tcgaaagatg gtcaggttcg      5640
     tcgagctgtc gtgaagacag caacagcgct ccttgagaga ccagccgtga agctagcagt      5700
     attggacgtc ggtgcaactg taagtacgtc ggaccagtaa gtccgagcac tgggggggag      5760
//
ID   BEL-808_AA-I repbase;    DNA;    INV; 5781 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-808_;
KW   BEL-808_AA-I; BEL-808_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5781
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5781
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2155-2155 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..5758
FT                 /product="BEL-808_AA-I_1p"
FT                 /translation="MSNRRDNVPRVDVSCGVCKEPDDSRMVCCDDCGGWFH
FT                 FKCVGVDEGIEEVDWSCTSCVARRAAQGTPTHLTVPSHGGTTKTSISDQEL
FT                 QNKQLAAFQKRLEQMQHSFQEQQQSYEKLLAQKDQEMKNAVNDLQHQFQRR
FT                 LEMREAEIRSELFAPITVAPPSANSTTLGGNRSATDVSKVIERIEQQLQEM
FT                 ANKQELETKRLEGRLRAMEIGNSDQAGIHSSDRAEANSSDLNVNAHAFVSN
FT                 HHSGLSSMSGTHELSRSQLAARQAVAKELPIFTGNPEEWPLFIATYDSTTR
FT                 MCGFSDEENLLRLQRSLKGKALEVVRSRLLYPAGLGGVIGTLRTLFGRPEV
FT                 IVHSLVSKIREMPAPKTEKLGTLIDFGVAVQNMCATIVACGLNEHLCNVAL
FT                 LQELVDRLPPTIKLDWAKHRQTLQAVTLSDFSTWLGTLVEAACVVTVPSSI
FT                 IANVGKQEKRGRKEELHFHHEVSSCQTSAPASIAKIAQKPTSKQCVICQGG
FT                 CSSVESCKAFRDMSVSGRWTALKHNKLCRKCLVKHFGACTVKQACGRNGCT
FT                 YMHHELLHDDSRYQRQESSQSSTTQSTAESHTETCNTHVSKVSQVLFRYVP
FT                 VLLHGRGKSVRTFAFLDDGSSATMMEHSLLKELELEGESYPLCLEWTADHQ
FT                 RQEMNSMMLSLAISGVHESNTYWIPKVHTVKSLSLPRQTLAMEELVRQYHH
FT                 LKDLSADSYRNVRPRILIGMDNIRLGHALDSREGGINEPIATRTRLGWIVF
FT                 GPCSTAVQAVTDFTGHHSFHLCQCSEQKDIELHRAVKAYFTLESQGITSPI
FT                 KPLLSKDDERAERLLVSLTHLKEKRYETGLLWRYDDVRLPDSKSMAMRRLV
FT                 CLEKRMQREPQLAEALKEKIRDYERNGYIVKLTESQLSEHFSRVWYLPIFP
FT                 VVNPNKPGKLRIVWDAAAKVAGTSLNSFLLTGPDQLTSLPSVLRRFREYRI
FT                 AVTGDIREMFHQVMVNKDDQQCQRFLWRDGENDRGPDVYAMKVMTFGATCS
FT                 PSCAQYVKNHNARRFMEQFPRAAEAIVDEHYVDDMLSSEETEEDAVKLAKD
FT                 VRFVHGEAGFEIRNWLSNSKRVLLELEAKPGEKSLNLSNELGTEKVLGMWW
FT                 CTATDTFTFKVSPRISADLLQGRIVPTKRQILSTLMMIYDPLGLLANFLMF
FT                 LKMLLQEIWRSRVDWDDQIEDEQFQKWGRWLRVLPQVENVSVPRCYRLKTS
FT                 IGQQNTIQLHTFVDASENGYAAVAYLRFEENDVMECALVGAKARVAPLRFV
FT                 SIPKLELQAAITGARLANDVMETHKLKPVKRFFWSDSRDVLCWLNSDHRKY
FT                 SQFVGMRVSELLELTETNEWNWISTKLNVADDATKWQKSPDLSPTSRWFHA
FT                 PDFLWKPREQWPSPPSKFEETAEEMRPRALHHFAQPALLRWEDFSNWSDLL
FT                 RRMAYVRRYPANLRKKLAKNSIVTGPLTQEELRAAELLIFKMVQDAEFAPE
FT                 IGLLEKSKLSPRSKPLPTNSSLYKLSPYLDGDGLLRMKGRIDACEVVDECM
FT                 KHPILLPKRHAVTDLIIAGVHQRYCHMNHQTALNDIRRRFYVPQLRSTYNR
FT                 VRNRCQHCKNRLAKPAAPEMSALPPARLKAFCRPFSYIGIDYFGPMNVVVG
FT                 RRIEKRWGVLITCLTVRAVHIEVASSLTTDSCILALRNFIARRGTPLEIIS
FT                 DRGTNFVGASRELKEALQQVNQDKLMQHFVTADTKWSFNPPASPHFGGSWE
FT                 RLVQTVKKALKQTQLTRTPTDEILRNMLTEIELIVNSRPLTELPLDDEHAQ
FT                 SLTPNHFLLGSSDGSKPPIAFDDSSYALKHTWKTSQVYANRFWRRWVSEYL
FT                 PTLTRRTKWFTRVKPIAEGDIVVIVDETLPRNCWPKGRVVRTIRSKDGQVR
FT                 RAVVKTATALLERPAVKLAVLDVGATVSTSDQ"
XX
SQ   Sequence 5781 BP; 1519 A; 1406 C; 1614 G; 1242 T; 0 other;
     ttttaaaaaa tccgtttatt tcgcgatcgg gaaggctgca aaaatgtcaa atcgtcgaga        60
     taatgtgcca agggtcgatg tgagttgtgg tgtgtgcaaa gaaccggatg atagccggat       120
     ggtgtgctgt gatgactgtg gtggatggtt ccactttaag tgcgtgggcg tcgatgaagg       180
     gatcgaggaa gttgactgga gctgtacatc gtgcgtagca aggcgggcag ctcagggcac       240
     tccgacccat ctgacggttc cttcacatgg tggaacaacc aagacatcga tcagcgacca       300
     ggaactgcag aacaaacaac tcgcagcgtt ccaaaagcgg ttggagcaga tgcagcatag       360
     tttccaggag caacagcagt catatgagaa actgctcgcg cagaaggacc aggagatgaa       420
     gaacgcggtg aatgatttgc agcaccagtt tcaacgccgt ctagagatga gagaggcaga       480
     aatccgatcc gaactgtttg ctccaataac tgtggctcct cctagtgcaa attctacaac       540
     gttaggagga aaccgttcag cgacagatgt gagcaaggtg atcgagcgga ttgaacagca       600
     gcttcaagag atggcgaata agcaggaact ggagacgaag cgtcttgaag gacgattgag       660
     agcgatggag attggcaaca gcgaccaagc gggaatacat tccagcgatc gagcggaggc       720
     aaattccagc gacctgaacg ttaacgcgca tgcatttgtt tcgaatcatc attctggcct       780
     ttcatcgatg agtggtacac acgagcttag cagaagtcag cttgctgcgc gacaagcagt       840
     ggcgaaagag cttcccatct tcaccggcaa tcccgaggag tggccgctgt ttattgccac       900
     ctatgacagc actacaagaa tgtgcggttt cagcgacgag gagaaccttc ttcggcttca       960
     gcggagtctg aaaggaaagg ctctcgaggt ggttcggagt agactgttgt acccagctgg      1020
     gcttggagga gtgattggta cactacgtac cctgttcggt cgtccagaag tgatcgtcca      1080
     ctcgctagtt agcaagattc gggagatgcc tgcgccgaag acggagaaac ttggaactct      1140
     gatcgatttt ggtgtagcgg tccagaacat gtgtgcgaca atcgtagcct gcggtttgaa      1200
     cgagcatctg tgcaacgtgg cgcttcttca agagctagtg gacaggttgc cgcctactat      1260
     caagcttgat tgggcgaagc atcggcaaac gctgcaagcg gttacactat cggacttcag      1320
     tacctggttg ggtacgcttg tggaggcagc atgcgtagta acagtcccat cgtccatcat      1380
     tgcaaacgtg ggcaagcagg aaaagcgtgg tcggaaggag gaattgcact ttcatcacga      1440
     ggtcagctct tgccagacgt cagctccagc aagtattgcg aagattgcgc agaagccgac      1500
     cagtaagcag tgcgttattt gccaaggagg ctgcagtagc gtggaatcgt gcaaagcgtt      1560
     tcgagatatg agtgttagtg ggcggtggac tgcgctcaag cacaacaagc tgtgccggaa      1620
     gtgtctagtg aaacattttg gagcttgtac agtgaagcaa gcttgcggaa ggaacggttg      1680
     cacgtacatg catcatgagc tgctacatga tgactcccga taccagcgac aagagagctc      1740
     tcaatcgtcg actacccaat ccactgcgga atcgcatacc gagacgtgta acacccacgt      1800
     aagcaaagtt agccaagttc ttttccgtta cgtcccggtg ctgcttcacg gaagaggaaa      1860
     gtccgtacgt accttcgcct ttttggacga cggctcatca gcaacgatga tggaacacag      1920
     tttactgaaa gagctggaac ttgaaggtga atcgtacccc ttgtgtttag aatggaccgc      1980
     ggaccatcag cgtcaagaaa tgaattccat gatgctgtca ctggcgattt ccggagtgca      2040
     cgaatcgaat acctactgga tccccaaggt acacaccgtg aaaagtctct ctctaccacg      2100
     acaaactctc gcgatggaag aattagtgcg gcagtatcac cacctgaaag atttgtcggc      2160
     tgattcttac cgaaacgtcc ggccacgaat actcattgga atggacaata ttcgcctggg      2220
     tcatgcgctt gatagcagag aaggaggaat caacgaaccg atcgccacca gaactcgtct      2280
     aggctggata gtgttcggtc cttgctctac agcagtccaa gcggtgacgg atttcactgg      2340
     gcaccacagc ttccacttgt gtcagtgcag tgagcagaag gatatcgaac tgcatagagc      2400
     cgtaaaagcc tactttacgc tggagagcca aggtataacg agccctatca aaccgctgtt      2460
     atcgaaagac gacgagcgag ctgaacgact actggtatcg ctgacgcact tgaaggagaa      2520
     gcggtacgaa acaggtttgc tgtggcggta cgatgatgtg cgacttccgg acagcaagtc      2580
     aatggcgatg cggcgactgg tatgcttgga gaagcggatg caacgtgaac cgcaactggc      2640
     tgaagcgctg aaggagaaaa tccgggacta cgagcggaac gggtatatcg tgaagctaac      2700
     ggagagccaa ctgtcagagc atttctcacg cgtgtggtac cttcccatct tcccagtggt      2760
     gaatcctaac aagccgggaa aattacgtat cgtgtgggat gccgcagcaa aagttgcggg      2820
     aacgtcattg aactctttcc tactgaccgg tccagatcaa ctcacttccc ttccatctgt      2880
     attacgtcgc ttccgagagt accggattgc cgtcaccggc gatattcggg aaatgttcca      2940
     ccaagtgatg gtgaataaag acgaccagca atgccagcga ttcctatggc gtgacggcga      3000
     aaatgaccga ggtccagatg tctacgcgat gaaagtcatg acgttcgggg ctacgtgttc      3060
     gccaagctgc gcgcagtacg taaaaaacca caacgcgcga agattcatgg agcagtttcc      3120
     gagggcggca gaggccatag tcgacgaaca ttacgtcgac gacatgcttt ctagcgagga      3180
     gaccgaagaa gatgctgtga agctggcgaa ggatgttcgt ttcgttcacg gggaggctgg      3240
     attcgaaatt cgcaactggc tgtcgaactc gaaacgcgtg ctgctagaac tggaagcgaa      3300
     acctggcgag aaaagcttga acctttccaa cgagttggga acagagaaag ttctcggcat      3360
     gtggtggtgt accgccaccg atacgttcac cttcaaagta tcgccaagga ttagtgcgga      3420
     tttactccag ggtcgcatag tgccgactaa acgtcagatc ttaagcacgc tgatgatgat      3480
     ctacgatcca ctgggacttc ttgcaaactt cctcatgttt ctgaaaatgc tgctgcagga      3540
     gatttggcga agtcgcgtcg actgggacga ccagatcgaa gacgaacagt tccagaaatg      3600
     ggggaggtgg ctgcgagttc tgcctcaggt ggagaacgtt agcgtgccta ggtgttaccg      3660
     actgaagacc agcatcggac agcagaacac aatacaactt catacgtttg tagatgcgtc      3720
     ggaaaacggg tatgcggcgg tagcgtattt gcgattcgaa gaaaacgatg tgatggaatg      3780
     cgcgcttgtc ggcgcgaagg cacgagtagc tccattgcga ttcgtgtcga tccctaagct      3840
     agaacttcag gctgcgataa ccggagctcg tttggcgaac gatgtcatgg aaacccacaa      3900
     gctgaagcca gtaaaaaggt ttttctggtc agattctcgt gacgtacttt gctggcttaa      3960
     ttcagaccac cgaaaataca gccagtttgt aggaatgcgt gtaagtgaat tgctggagct      4020
     gacggagacg aatgagtgga actggatttc gactaaattg aacgtcgccg atgatgctac      4080
     aaagtggcaa aaatcaccag atctatcgcc tacaagtcgg tggtttcacg ctccagattt      4140
     cctgtggaag ccgagagagc agtggccttc cccaccgtca aagttcgaag agaccgcaga      4200
     agaaatgcgg ccgcgggcgc tccatcactt tgcgcagcct gcgcttcttc gttgggaaga      4260
     tttttcaaat tggagtgatc tgctacgtcg tatggcatac gtgcgacgat atccggcgaa      4320
     tttgcgtaag aagctggcga aaaactcaat cgtcaccggt ccgctaacgc aggaggagtt      4380
     gagggcagca gaattgttga ttttcaagat ggtgcaggat gctgagttcg cccccgagat      4440
     cggtctatta gagaagtcga aactttcacc gagaagtaag ccgttgccga caaatagctc      4500
     gctgtacaag ctgagtccgt atctggacgg agatggatta ctgcgtatga aaggccgtat      4560
     agacgcctgc gaagtcgtag acgagtgtat gaagcacccg atactgctgc ccaagcgcca      4620
     cgcggtaaca gatttgatca ttgccggagt tcaccaacgg tattgtcata tgaaccacca      4680
     gactgcccta aacgacatcc gacgaagatt ctacgtgcct caactccgct ctacgtacaa      4740
     tcgtgtacga aatcgatgtc aacactgtaa aaaccgcctc gcgaagccag ctgcgccgga      4800
     aatgtctgcc ctcccacctg cacggttgaa agccttctgc cggccgttct cctacattgg      4860
     tatcgactac tttgggccga tgaatgtggt tgtcggccgg aggatcgaga aacgttgggg      4920
     agttttgatc acctgcctca ccgtgcgagc cgtgcacatc gaggtcgcca gtagcctcac      4980
     tacggactcg tgtatcctcg ccctgcgtaa ctttatcgcc agaagaggta ccccactgga      5040
     aataatcagc gatcgaggta ctaactttgt cggagccagc cgggagctga aggaagcact      5100
     gcagcaagtt aatcaagaca agctgatgca gcatttcgtc accgcagaca ctaagtggtc      5160
     cttcaaccca cctgcatccc cgcactttgg cggatcgtgg gaacgcttag tccagacggt      5220
     gaagaaggcc ctaaagcaaa cccaactcac acgcacaccc acagacgaaa tactgcgaaa      5280
     catgttgacc gagatagaac tgattgtcaa ctcacgtcct ttgacagaac tgcccttgga      5340
     cgacgagcac gcacagtcac tcacaccgaa ccattttttg ctcgggtcgt cagacggttc      5400
     aaagcccccg atcgcgtttg atgacagtag ctacgccctc aagcatacct ggaaaacgtc      5460
     tcaggtctac gccaaccgat tctggcgacg ctgggtatcc gagtacctgc caaccctaac      5520
     cagaaggacg aagtggttca cccgcgtcaa gcccatagcg gaaggagaca tcgtggtcat      5580
     cgtagacgag acattaccga ggaactgttg gccgaaaggc cgtgtcgttc gcactatccg      5640
     atcgaaggat ggtcaggttc gtcgagctgt cgtaaaaaca gcaacagcgc tccttgagag      5700
     accagccgtg aagctggcag tattggacgt cggtgcaact gtaagtacgt cggaccagta      5760
     agtccgagca ctggggggga g                                                5781
//
ID   BEL-808_AA-LTR repbase;    DNA;    INV; 915 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-808_AA-I;
KW   BEL-808_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-915
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-915
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2026-2026 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 915 BP; 346 A; 153 C; 143 G; 273 T; 0 other;
     tgtcgcaaca ttcattgcgt cgcacctaca catccaatcg ccgttatcca gacttgcgtt        60
     atagggtatc atcgttttca taccgaagcg ccgctgtgcg tcaacgtcaa aataagaatg       120
     acagtaggta gggaagacgt cagataaaaa acagaaaagc tgtggtaaag tgtgcttcgg       180
     taaattgaac aaatttattt attaaattat taaaattttc gaataatatt aaaattgagt       240
     ttatgcctta gcctttaaat gttagttacg tgcgtgagtc aaaacattga ttgaaaaaca       300
     atagttaaaa cgtgctaaaa cagaaaagtt agtacggtct taaaagtagg ttagtttcat       360
     gcacatgcag tattaaaatc atgccttaat ctaatggaat tcctaatata aaattataca       420
     acaacagcta ctatcctaag aaactacggg aacatgcaaa aactgaatta tatctaagac       480
     aagacattgt gaacaggtaa aatgtacatt gaaatattgt gaacttatac ctaacctaaa       540
     tctaaacctt tttagcattc ccagtaccga tccaggagat aaacgcacaa acacaaatga       600
     gacactaaac gtaagtctat cagttttcta attagaatgc ttctttatag aattatatat       660
     agtatatata ttttttgaga tgttattccc tatgaattgg aatctcattc ctcaagaaaa       720
     cactgaaaac taatattgta acatgaaaca cacaaaaacg gaaaattgtt atgtataaca       780
     caaattacat tatgtacaac ataaattaca ttaatttccc tatgattttc accgataggg       840
     attttttaac gttgggcaaa aataaacgtt caaggaaccg gaaaacaagt ctctgttttc       900
     gttgcaattg caaca                                                        915
//
ID   BEL-809_AA-I repbase;    DNA;    INV; 6142 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-809_;
KW   BEL-809_AA-I; BEL-809_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6142
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6142
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2160-2160 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..6108
FT                 /product="BEL-809_AA-I_1p"
FT                 /translation="MSSRNTSKSGAYGGSKGDRSDKDRSDTPAGVGSLPVV
FT                 TITTEEVVQTRPGWSCKSCREPDDSAMVQCDLCHEWHHFSCVGVTEDVEKV
FT                 SWCCPECADATGLQQTTLTSGQQLPSTSGVTGSQNKQRKPSDGKASSSEIR
FT                 RPTNTLRVTTRSASRKEAPISDLPPAVEETADVSAFDSLQKSNAERENQPK
FT                 GTPAGTIRSSSTQKSLMLQLQRLDEENALQREYIQKKYSILEQMSSRSGSS
FT                 YGTGSSRVESWIKKTNTLLQDGKLHTKYSNSVRVAEDVEELPFTNLSVQQP
FT                 NSPQYSMRPGPRCTPSHASQLFSDANRSSASLPREVGIPAYRPSYLPLPQG
FT                 TSVYPPPERNRMPSPIIVSHPNPHQYQAPNSQQLAARQAISKDLPPFSGQP
FT                 EEWPIFLSTFTNTTAMCGFTDDENIIRLQKCMKGKAYEAVKSLLMHPSNVQ
FT                 RVIDTLRMLFGQPESIVHSLISKINHLPAMREDKFETIVEFAVNVRNFCAT
FT                 VDACGMEEYLYNISLLHQLVAKLPPTIKLDWARYRQTLPAVNLAAFGNWVY
FT                 SLAEAASTIAIPPVGLESKSTRGDSRGNKKGNAFLNAHSESSSVHPSSGKF
FT                 KPASGRMDHETCPICKGGCKAVEKCRRFLELSRESRWAAVRESGLCRKCLR
FT                 SHKGVCKVKPCGKDGCELKHHQLLHNDKKVATTSANVCTQPSGQQSSEIKI
FT                 GTQTHDCNVHRTTSSSVLFRYLPVILYGKSRSVETYAFFDEGSELTLLDEE
FT                 LAEELQLEGGALPLCLRWTGGAERNEGSSRVVDLDIAGVHSQHKRFPLTSV
FT                 RTVKELLLPFQTLEAAELKRLYPHLRGLPIQSYREARPRILIGMKHVSVGV
FT                 VLKCKEGNFEDPVGVKTRIGWTVCGRLSRDAGGSAQCMVHVCSENQDSDDQ
FT                 LHQAMKAYFALDSLGVAKPNGNLLLSSEDQRAKYLLESTTKLLDNRYEVGL
FT                 LWRHDNVRLPNNQAMALRRHQQLRKRMDRDIDLAETLNGKIAEYVAKGYAR
FT                 KLTPEELEQSYPRTWYLPIFPVTNPNKPGKIRLVWDAAAKSFNVSLNSALL
FT                 KGPDLLCSLLAILLQFRQGRIGLSGDIREMFHQILMRTEDQHCHRFFWTDE
FT                 NGELAVYVLQVMSFGASCSPSCAQYVKNVNAERFRATHPIAVEAITKRHYV
FT                 DDMLVSVDEENQAIRLAEEVKYVHSQGGFEIRNWMCNSRTVLTALHEGDTA
FT                 EKDMDLSSEIAVEKVLGMWWSTETDEFLFKVGWNRYDSLLLTGQRPPTKRE
FT                 MLRVLMTIFDPLGLIAHFLIFLKILLQEVWRSKVQWDEEVSGDVYRKWQLW
FT                 TSVLPQVENVRLPRCYSSPLAVSSCTDIQLHTFVDASENGFAAIAFLRFDY
FT                 NGSTQCSIVASKARVAPLKFLSIPRLELQGAVLGARLAQTIISSLTLRITR
FT                 RVYWTDSRDVLHWINSDHRRYSQFVAFRVSEILETSEPEEWRWVPTRLNAA
FT                 DDGTKWDGKPDLSSDSRWFTGPDFLWCSETKWPQTPRLVSPPTTELRPHLM
FT                 VHRTAPHISLIRYNNFSNWQRVRNSMAFVFRYISNLRLKAKQQQXFLGPLT
FT                 MMELRKAEAYLFRVAQQEGFPDEVTTLQQQRSTSSVKLLPKSSPLYQMSPW
FT                 LDEQGVLRMRSRIGACQFVSHDTKQPIILPRTHHITTLVIMHYHYKYHHCN
FT                 HETVINELRQKFHIPRIRVAFTKARKGCQRCKNENAAPQPPFMADLPAARL
FT                 AAFTRPFTYVGVDYFGPLEVVVGRRTEKRWGMLITCLTVRAIHIELVCSLS
FT                 TNSCIMGLRNFISRRGTPRRIYSDRGTNFIGANRELSEAVAAINQPVMAEF
FT                 VSPDTEWIFNPPAAPHMGGCWERLIRTVKTNLMAIRPASKLTDEELRNTLT
FT                 EIENIVNARPLTHVPIDNDSAPALTPNHFILGSSNGSKPLSTLDDSGSTLQ
FT                 RNYRTSQILANQFWRRWVSDYLPEISRRTKWFAHTKPLSIGDIVVIADPRL
FT                 PRNCWPKGRIILTNKGRDGCIRSATVQTANGVYERPATKLAVLDVHREAL"
XX
SQ   Sequence 6142 BP; 1734 A; 1492 C; 1468 G; 1447 T; 1 other;
     aattataaaa ttcgtttagt tcagccgaac aaaatgtcta gccgcaatac cagcaaatca        60
     ggcgcatacg gtggatcgaa aggcgataga tcggataagg atagaagtga tactcccgcc       120
     ggagtaggaa gcttaccagt ggtgacaatt acgacggaag aagtggtgca gactcgccca       180
     ggatggtctt gtaaatcttg tagagaaccc gacgatagtg ctatggtgca gtgcgatctc       240
     tgccatgaat ggcatcattt ttcatgcgtg ggagtgacag aagatgttga gaaggtgagc       300
     tggtgttgtc ccgaatgcgc cgatgcaacc gggctccagc aaacaacctt gacaagtggt       360
     caacaactcc catcaacgag tggtgtaacc ggcagtcaga ataagcaacg caaacctagc       420
     gatggaaagg cgtcttcttc ggagataaga cgacccacga acacgttacg agtaaccaca       480
     aggagcgctt cacgaaagga agctcccatt tccgatttac cgccagctgt agaagaaacc       540
     gcagatgtgt cagcctttga ttctttacag aaatccaatg cagaacgcga aaaccagccg       600
     aagggaactc cggccgggac cataaggtcg agttctacac aaaagtcact gatgctgcaa       660
     cttcagagac ttgatgaaga aaatgcacta cagcgagaat acatacagaa gaagtatagc       720
     attctcgagc aaatgagcag ccgctctggt tcgtcgtatg gcacaggttc cagtagagtc       780
     gagagttgga taaaaaagac gaataccctg cttcaggatg gcaagcttca tacgaaatac       840
     tccaattcag taagagtagc agaggatgta gaagaattac cttttacgaa cctgtccgtt       900
     caacaaccaa attcgcctca gtacagcatg agaccaggcc ctaggtgcac acctagccat       960
     gctagccaac ttttcagcga tgctaatagg tcgtccgcca gtctaccacg tgaagtcgga      1020
     attcctgctt atcgtccatc gtacctgcca ctgcctcagg gtacttcagt atacccgcca      1080
     cctgaacgca atcgtatgcc atctccgata atcgtttccc acccaaatcc gcaccagtat      1140
     caagcaccga acagccaaca actcgctgcc cgacaagcga tatcgaaaga tttgcctccg      1200
     ttctccggac aacccgaaga atggccgata ttcttatcaa ctttcactaa tactactgcg      1260
     atgtgcggat ttactgatga tgagaatatt atcagactgc agaagtgcat gaagggtaaa      1320
     gcgtatgagg cggtgaaaag tttgctcatg catccgtcaa acgttcagcg tgtaatcgat      1380
     actctgcgta tgctctttgg tcagccggag tcgattgtac attcgttaat ctcaaaaatt      1440
     aaccatctgc cagctatgag agaggataaa tttgaaacta tcgttgagtt tgctgtgaac      1500
     gtccgtaact tttgtgcgac ggtcgacgca tgtgggatgg aagagtattt atacaacatc      1560
     tctctgttac atcagctcgt tgccaagctt ccaccaacca tcaagctgga ctgggcacgc      1620
     taccgccaaa cactaccagc ggtgaattta gcagcgtttg gaaactgggt ttactcttta      1680
     gccgaagcag caagcacaat tgctattcct ccagttggtt tagagtcaaa gtcgactcgg      1740
     ggcgattctc gtggaaacaa gaaaggaaat gctttcctaa acgcccattc tgaatcatcg      1800
     agcgttcacc cttcatcggg taaattcaag ccagcatcgg gtcgaatgga tcacgagacg      1860
     tgtcctatat gcaaaggcgg gtgcaaggca gttgaaaaat gcaggcgttt tctagaacta      1920
     tccagagaat caagatgggc tgcagttaga gaaagcggac tttgccgaaa atgtctccgc      1980
     agtcacaaag gagtatgtaa ggtgaaacca tgtggaaagg atgggtgtga actgaagcat      2040
     catcagctac ttcacaatga taaaaaggta gcgaccacga gtgcaaacgt gtgcacacag      2100
     ccgtccggac agcagtcatc cgaaataaaa atcggtaccc agacacatga ttgcaacgtc      2160
     caccgtacaa cttctagttc cgttcttttt cgttacctac cggtaatact ttatggaaaa      2220
     agtcgatccg tcgaaacgta tgcgttcttt gatgaaggat cggagcttac actattagat      2280
     gaggagttgg cagaagaact acaacttgaa ggtggcgctc taccactttg ccttcgatgg      2340
     accggcggtg cggaacgaaa cgaaggtagc tcccgagttg tcgatctgga catcgctgga      2400
     gttcatagtc aacacaaaag gttccccctt acatctgtta ggaccgtcaa ggaactgcta      2460
     ttaccatttc aaacattgga ggctgcagaa ttgaagcgac tgtatcccca tctgcgtggg      2520
     ctgccaatcc aatcatatcg tgaggctaga ccacgtattc tgataggaat gaagcatgtt      2580
     tctgtcggag tagtactcaa atgcaaagaa ggaaatttcg aggaccctgt tggtgtcaag      2640
     acccgtattg gctggacggt ttgtggaagg ttgagtcgtg acgccggagg gtccgcccag      2700
     tgcatggtcc acgtatgctc tgaaaatcaa gattcagacg accagcttca ccaggctatg      2760
     aaggcatact ttgcgctgga cagtcttggt gtcgcgaagc ctaatgggaa tcttctcctt      2820
     tcctccgaag atcaacgcgc caaatatctg ctcgaatcga cgacaaaact tctcgataat      2880
     cgttacgaag taggattgct ctggagacac gacaacgtac gactgccaaa caatcaagcg      2940
     atggctttgc gtaggcatca acagctcaga aagcgaatgg acagagatat tgacttagca      3000
     gagactctca acggaaaaat tgctgaatat gttgccaaag gatacgccag aaagctgaca      3060
     ccagaggaac ttgaacagtc gtacccgcgc acctggtacc tgcctatatt ccctgttacg      3120
     aaccccaaca agccaggaaa gataagattg gtgtgggacg cagccgccaa atcattcaac      3180
     gtttcattga attccgcctt gttaaagggc cccgatctgc tatgctcact gttggcgata      3240
     ctcctacaat ttcgccaagg tcgaattgga ttatccggag acatccgtga aatgttccat      3300
     cagattttga tgcgaaccga ggaccaacat tgtcacagat tcttctggac agacgagaac      3360
     ggcgaattgg ctgtctacgt gttgcaagta atgagttttg gggccagctg ttctcctagc      3420
     tgtgcccaat acgtcaaaaa cgtaaatgca gaacgtttcc gggccaccca tccaattgct      3480
     gtggaagcaa taacaaagcg ccattatgta gacgacatgt tagtgagcgt cgatgaggaa      3540
     aatcaagcaa tacggttagc ggaagaggtt aaatatgtgc attctcaagg tggctttgag      3600
     atccgcaatt ggatgtgcaa ttccagaact gttcttacgg cactgcacga aggtgatacg      3660
     gctgagaagg atatggatct ttcctccgaa attgccgtcg agaaagtcct cggaatgtgg      3720
     tggagtacgg aaacagatga attcttattc aaagtagggt ggaaccgata cgattcactt      3780
     cttctaacgg gccaaagacc gcccaccaaa agagaaatgc tccgggtctt aatgacgatc      3840
     tttgatcctt taggacttat cgcacacttc ctaatatttc tcaaaatttt gctacaggaa      3900
     gtgtggagat cgaaggtgca gtgggacgaa gaagtctcag gagatgtgta caggaaatgg      3960
     cagctgtgga caagcgttct tccccaagta gaaaacgtcc gccttccacg ctgttacagc      4020
     tctccgttag cagtaagcag ctgtaccgac atccaactcc acacgttcgt cgacgcaagc      4080
     gaaaacgggt ttgctgcgat agcgttcctt cgattcgact acaacggatc tacgcagtgc      4140
     tctattgtag cttcgaaagc tcgtgtagct ccattaaagt tcctttccat acctcggttg      4200
     gaacttcaag gtgccgttct tggagcaaga ctagcgcaga ccatcatctc ctctctaacg      4260
     cttcggatta ctcgacgagt gtattggaca gattctcggg acgtgcttca ctggatcaat      4320
     tcagatcatc gtcgctactc acaatttgta gccttccgag taagtgagat tctcgaaaca      4380
     tctgagccag aggaatggcg atgggtgccg accaggctta acgcggccga cgatgggact      4440
     aagtgggacg gaaagccgga tctttcatca gacagcagat ggttcaccgg tccggatttt      4500
     ctatggtgtt cagaaacaaa atggcctcaa acccctcgtc tagtttcacc gcccactaca      4560
     gagcttcgtc cacacttgat ggttcatcgc acggctccac acatttcact tattcggtac      4620
     aacaacttct cgaactggca gcgcgtacga aacagcatgg catttgtttt tcgttacatc      4680
     tctaacttac gactgaaagc gaaacagcaa caaawttttc taggaccgct gacaatgatg      4740
     gaactcagaa aagctgaagc gtatctattt cgtgttgctc aacaagaagg tttccctgac      4800
     gaagtaacta ctctgcagca acaacgctca acttcttctg taaaacttct tccaaaatct      4860
     agtccgctgt atcaaatgag cccatggtta gatgaacagg gagttctgag gatgcgaagc      4920
     agaatcggcg cttgtcaatt tgtcagtcac gacaccaagc agccaattat tttgccacgt      4980
     actcaccaca tcacgacgct agtaattatg cactatcact acaaatacca tcattgtaat      5040
     cacgaaactg ttataaacga actgagacaa aagtttcaca tcccccgcat tcgagtcgcc      5100
     ttcaccaagg cacgcaaagg ttgtcagcgt tgcaaaaacg aaaatgcggc tccacaaccg      5160
     ccattcatgg cggaccttcc agcagcaaga cttgcagcgt tcacgcgccc cttcacatat      5220
     gtcggggtag actactttgg tcctctggag gtggtcgtcg gtaggaggac ggaaaaacgt      5280
     tggggaatgc tgattacctg cttgaccgtc cgagcgatcc acattgagct ggtctgttcc      5340
     ctcagtacta actcatgtat tatgggtcta cgaaacttca tttctcgcag gggtactccg      5400
     aggagaatct atagtgaccg aggtacaaat ttcatcggtg caaaccgaga attaagtgaa      5460
     gctgtggctg caatcaacca acctgtgatg gccgaatttg tgagtcctga tacagaatgg      5520
     attttcaacc cccctgctgc acctcatatg ggtggttgct gggagagatt gatccgtacg      5580
     gtgaagacta acctaatggc aattcgtcct gcatcgaagc tcacggacga agaactaagg      5640
     aacacactca cggaaataga gaatatcgtg aatgctcggc ccctgaccca tgtaccaatc      5700
     gacaacgatt ctgctccagc gttgacccca aatcatttta ttctcgggtc atcgaatggg      5760
     tctaaacctc tttcaaccct agatgatagt ggttctacat tacagcgcaa ttaccgaacc      5820
     tctcaaatac tcgccaatca gttctggaga cgctgggtaa gtgattatct cccagaaata      5880
     tccaggcgga caaaatggtt tgcgcacacg aagccgcttt cgatcggcga catagtcgtc      5940
     atcgctgacc caagacttcc cagaaattgt tggccaaagg gacgaatcat tctgaccaac      6000
     aaaggacgag atggatgcat ccgatctgcc accgttcaaa cagctaacgg agtgtacgaa      6060
     cggcctgcta cgaagctggc agtccttgat gttcaccgcg aagcattata agccaaccgg      6120
     aagttggcgt accccggggg ag                                               6142
//
ID   BEL-809_AA-LTR repbase;    DNA;    INV; 678 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-809_AA-I;
KW   BEL-809_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-678
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-678
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2027-2027 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 678 BP; 239 A; 114 C; 113 G; 211 T; 1 other;
     tgttgtcaac gcgcagttcc accggactgg caacgcttct acgaatacta ttacaaaggg        60
     aaactgtagt acctatatgg acttggcaaa ctgtcaagga gatgagatgg caagaaatta       120
     gaataacgag gcgtgaacaa agacaaattg gcacaattct ttaatctaaa acaaacttat       180
     gtctaaagtt agtaaaatct taatctattg ttagttaatg ataaaagtta ataagctatt       240
     ttctattagt acggtaagag tgaattatta tgaactgaac atgctgaatt tctattctaa       300
     actacttatc tattagctta acctamacga acggcgagca attcattacg gcagttaaat       360
     ctaaaatcac acaaataatt agttggtgag tgattattat tttcgtttgt atagtataat       420
     tgaatcaacc ataaaagata ttaacttaaa attaacttta ggtatccatg caacaataac       480
     cgtcagagta tcaattgttg tctgactccg agcgcgtagt aaacgtgagt aaaatttgta       540
     gatgcattgt tttataaaaa ctctatattt catagctact ctcctctcat ccaggaattt       600
     tataaccgcc cccacattga actcaaataa acggtttata aaaacggaat ctgctctttg       660
     ttgtatggtg agccaaca                                                     678
//
ID   BEL-80_AA-I repbase;    DNA;    INV; 5964 BP.
XX
AC   supercont1.324;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-80_AA_;
KW   BEL-80_AA-LTR; BEL-80_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5964
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.324; Positions  208251  202288.
XX
CC   Positions [4994-5578] - Integrase core
CC   'AAGTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           606..4541
FT                 /product="BEL-80_AA-I_2p"
FT                 /translation="MPENSESKQQQIGKSGASSVLGQSTLDSSTPSSKKQK
FT                 KKFRLTEKLATMENMQRLVRRRGAAKGKVSRILNTIRPNEEEVVQLTEAEI
FT                 KVYMRKLEAAHKDYNDAHDQITNVVSIDDYDQHEQQYEEFDILHDSVAILL
FT                 EDQLNRINAAAAANANARNQQVPVVIHQPLRMPVPTFDGRYESWPKFKAMF
FT                 KDLVDKGPDPPAVKLYHLDKALVGSAAGLIDAKTINEGNYAHAWQILEERF
FT                 ENKRHAIDSHIHGLLNLKRMTKKSHLELRSLVDECNKHVEGLKFLERDFDG
FT                 VGEDFVIHLLAAALHNDVRHMWESTIKHGELPDYDEMLAFLKEQTFILERV
FT                 EASSQKSSSAPIKSVSAANKPPMQKVYAAVSSSETEMKCDFCGKAHANHNC
FT                 AEFKALHVPQRLLKVRERNVCFNCLRRGHRGVDCSSDKSCLKCKRRHHSLL
FT                 HAEEKTKQVPEPSSQPLPKPAVEQEPTPSTSTTATCSSLAPRSQQVVLLTA
FT                 VVDVMDKNYQPHPCRILLDSGSQVNLISRAMANMLGLKLNSSNVTMFGVNS
FT                 TQTRSSNCGVVHLSSRFKDFHAKVKCLVTDKVTSDLPSSVINISALDLPAG
FT                 VQLADPKFFQPSKVDMLLGNEWFMKLMMPGEITLADNLPVLRETQFGWVIG
FT                 GVFEEGALADEAVYSHTVTMDELSQSIERFWEVEDVVGADKHGSEEEECEE
FT                 HFNATHRRDASGRYIVELPLKESVSELGDSRPLALRRFHALERKLSQHPDL
FT                 KKQYQDFMDEYESLGHCKEVDISKDPAGIIKWYLPHHAVLRPSNTTTKCRV
FT                 VFDASAKVSGRSLNDVMKIGANIQSDLQSICLRFRLPLHVMATDVAKMYRQ
FT                 VLVNQRHTPLSRVFWRKSSSDSLRVLELTTVTYGTASAPFLATRALLQLAL
FT                 DEGSKYPVAADIVKNNFYVDNALFGFDDLNEAKEAQVQLIQLLKAGGFHLH
FT                 KWASNNPVLMERIPEGDRDELVSIDESGSSEVIKTLGLMWNPKMDALQFVS
FT                 LPTMSENRATKRQVLSLISRMFDPLGLVAPVIVIGKLLMKSIWKEELEWDE
FT                 ELTGNLKKRCDKFLSALRSVTNLRIPRHVVVTGAVAFELHGFGDATLEAYG
FT                 ACVYIRSIVPGQAPVVQLLCAKSKIVPKTVLTIPRKELLAALLLHRLVKKV
FT                 LAALALPFQDISLWSDNQVVLAWLAKNPEHLEVFVRNRVSEINSTGHQFKW
FT                 KYVNTLENPADIVSRGQSTHALEKNDLWWNGPLFLRSEVYQVVAPEPLSDE
FT                 DVRELRQVAATSAVTVLERLPVFTKFESSGSCNEFWHTFCVFAGMQRRRWP
FT                 "
FT   CDS           4541..5962
FT                 /product="BEL-80_AA-I_1p"
FT                 /translation="MKRIVARFPTVLEMRHSLKAITRVVQLQHFGKEVAMI
FT                 ESGEYCKRFSALNPFLDDGMIRVGGRLRHSNLPYGVKHQWVLPKNDETIQR
FT                 LIQAIHRENLHIGPSALLAQLRRQFWILGARSAVRKVTRNCVRCFRLKPPC
FT                 ASQFMGDLPVARCDKAPAFVKVGVDFAGPILIKQTGRKVAPVKGYVSVFVC
FT                 MVTKAIHLEVVEDLSADAFIAALQRFVSRRGVPEQIFSDNGTNFVGARNEL
FT                 NELYRLFKGQVTELKINEFCQPRQIEWKMIPPNAPHMGGIWEAGVKSVKTI
FT                 LKKKCQSSLLTMSEFSTLLCQIEAQLNSRPLYAPSEDPSELEPLTPGHFII
FT                 DRPLTAIPEPSYDGIPANRLSRWQYVQRLRQEFWKRWSEEYLLELQVRQKW
FT                 SKKKENILPGTVVVIKDDNLPPQQWKLGKVESTYTGSDGLVRVVDVRTKSG
FT                 VLKRPIHKLAPLPILDNQAVNENKVPAGE"
XX
SQ   Sequence 5964 BP; 1539 A; 1319 C; 1625 G; 1481 T; 0 other;
     taattttggt ccagtcgaac cggatcgcgc gtggtaaagt gtctttccga ctgttccgga        60
     accggatgca gaaccagtga agtgggattc cgaaaaagtc ggaaaattta aactataatg       120
     gtgtgagcaa aatggccgcc attgaagaag cgaagtagta gagcgacacc gccattttgt       180
     tgaagagcag tgtggtgtgt tgtcgccatc ttggaaatgt gctgatggtt taagccatcg       240
     aagaaaagtg gtgttacgag caattaagtg ctcaactcct ggggaataca cccccgcaaa       300
     gcgaagaaac aagttgtaaa gctggtgttc cggattggcc actgtgacca ttaattagtg       360
     gaataggttg cgtgagcata gacttggctg tgttcccaac caacgtcgag cagtgggctt       420
     ggcttgaagt ggtgtccgcg gtggcattcc ggaaaatagc gttgagtaaa gtgggttgtt       480
     tcaaaatccg tgtttcggtt cggtcacttg cgccgattag tgtccggttg cgtgagcata       540
     gacttggctg tgttcccaac catcgtcgag catagggctt gacttgatgc ggtatccacg       600
     gtggcatgcc ggaaaatagt gaatcgaagc agcagcaaat cggaaaatcc ggagctagtt       660
     ctgtacttgg acagtctact ctggattcct ccactccatc aagtaagaag cagaagaaga       720
     agttcaggtt gactgaaaag ttggccacca tggagaacat gcagagactc gtccgccgtc       780
     gtggcgcagc caaaggtaag gtttctcgta tccttaatac tattcgccca aatgaagagg       840
     aagtggtcca gctcacggag gctgagatca aagtgtacat gaggaagttg gaagctgccc       900
     ataaggacta caacgatgca cacgatcaaa tcactaacgt ggtttcgatt gatgactatg       960
     atcagcatga gcagcagtac gaggagttcg acatccttca cgattccgtt gcaattttgt      1020
     tggaggatca gctcaacagg attaacgcag cagctgcagc caatgcaaac gcgaggaacc      1080
     agcaggtacc ggttgtaatc catcaaccac ttcgcatgcc ggttcccaca tttgatggcc      1140
     gttatgagag ctggcctaag ttcaaggcca tgttcaagga tctcgtggac aagggtccag      1200
     atccgccggc tgttaagttg taccatctgg acaaggccct agttggtagc gcagcaggtc      1260
     tcattgatgc caagactatc aacgaaggca attacgctca cgcgtggcaa attctggaag      1320
     agagattcga gaataagcgt catgctatcg actctcacat tcatggtctg ctgaacctca      1380
     aacgcatgac gaagaagagt catttggagc ttcgtagtct ggtggacgag tgcaacaagc      1440
     atgtggaggg tctcaaattc ctggagcgag acttcgatgg tgtaggagag gatttcgtaa      1500
     tccatctgtt ggctgcagcg ttgcacaacg atgtgcgcca catgtgggag tcaaccatta      1560
     agcacggtga gcttcccgat tacgacgaga tgctggcgtt cttgaaggag cagactttca      1620
     tcttggagag ggtcgaagcc agcagtcaga aatcatcatc agcacctatt aagtctgtgt      1680
     ctgcagctaa caagccgccg atgcagaaag tctatgcagc cgtttcttca agtgagacgg      1740
     aaatgaagtg tgatttttgc ggaaaagcac atgccaatca taattgcgct gagttcaagg      1800
     ctcttcatgt tccgcagaga ttgcttaaag tgagagagcg aaacgtatgt ttcaactgtt      1860
     taagaagagg tcatcgtgga gtcgactgtt cttcggacaa atcctgtctg aagtgtaaac      1920
     gtcggcatca tagtctcctt catgccgaag agaaaaccaa gcaagttcca gaaccatcaa      1980
     gccagccgct cccaaagccg gctgtagagc aagaaccaac accatcaact tcgacgacag      2040
     ccacatgttc cagtctggct ccccgctcgc agcaagtggt gctgcttaca gccgtagtgg      2100
     acgtcatgga caaaaactac cagccacatc catgcagaat attgttggac agtggttctc      2160
     aagtgaattt gatttcacga gcgatggcaa acatgttggg cttgaagttg aactcctcga      2220
     acgtcacgat gttcggggtg aatagcacac agactcgatc gtctaattgt ggtgtcgtac      2280
     atctttcgtc gaggttcaag gatttccacg ccaaggtcaa gtgtttggta actgataagg      2340
     tgacatcaga tcttccttca tcggttatca atatcagcgc attggacctt cccgctggcg      2400
     tgcagctagc cgatccgaag tttttccaac cgagtaaagt agacatgctc ctgggcaatg      2460
     aatggttcat gaagttgatg atgcccggag aaattacgtt ggctgataat cttcccgttt      2520
     tgcgtgaaac ccaatttggt tgggttattg gtggagtgtt tgaagaaggt gcgttagctg      2580
     atgaagcagt ttactcgcac acagtcacga tggacgaatt aagccagtcc attgaacgtt      2640
     tttgggaagt agaagatgta gttggtgccg acaagcatgg tagtgaagag gaggagtgtg      2700
     aagagcactt caatgcgact catcgtagag atgcttccgg tcggtacatc gtcgagctgc      2760
     ctttgaagga gtccgttagc gagttaggtg attcccgacc actcgcattg cgaaggttcc      2820
     atgcgctgga gcgtaagctt tcgcagcatc cagatttgaa gaagcagtat caggacttca      2880
     tggacgagta tgagagtctt ggtcactgta aggaagtgga cataagtaag gatccagcag      2940
     gtatcatcaa gtggtactta cctcatcatg cagtgctgcg gccatcgaat accactacta      3000
     agtgccgtgt ggtgtttgat gcctctgcga aggtatctgg ccggtcgctc aacgacgtta      3060
     tgaagattgg agccaacata caaagcgatt tgcagtccat ctgtctgcgg ttccgccttc      3120
     cattacatgt gatggctact gacgtggcca agatgtacag gcaggttctg gttaatcagc      3180
     gacatacgcc gttatctcga gtgttttgga gaaagagttc atctgattcg ctacgtgtcc      3240
     tagagctgac aacggtcacc tacggcacag cttccgcccc gtttttggca acgcgggcac      3300
     tcttgcagtt ggctctcgat gaaggctcca aatatcctgt tgctgcagac attgtgaaga      3360
     ataacttcta tgtggacaac gctttgttcg ggttcgatga tttgaacgaa gcgaaagagg      3420
     ctcaagtgca gttgatccaa ctactcaagg ctggtggatt tcatttgcac aagtgggctt      3480
     ccaacaatcc tgtgttgatg gagcggattc cggaaggcga tcgggacgag cttgtcagca      3540
     tcgatgaaag tggttcaagt gaagtaatta aaacgttggg actaatgtgg aacccaaaaa      3600
     tggacgcttt gcagtttgta tcccttccaa caatgagtga aaatagagca accaagcggc      3660
     aagtgctgtc gctgatatcg agaatgttcg acccattggg tcttgtggcg ccggttatcg      3720
     ttatcggcaa acttttaatg aagagtattt ggaaagaaga gttggaatgg gatgaagagc      3780
     ttactggtaa tctgaagaag aggtgtgata aattcctgag tgcattaaga agtgttacca      3840
     atcttcgaat ccctcgtcac gtggttgtta ctggggccgt tgcatttgag ttgcacggtt      3900
     ttggtgacgc aactttggaa gcctatggtg cctgtgtgta catcaggtca attgtacctg      3960
     gccaagctcc tgtggtgcag ttattatgtg ccaaatcgaa gatcgttccg aaaacagtgt      4020
     tgaccattcc aagaaaggaa cttttagcag cgcttttgct gcatagattg gtgaagaaag      4080
     tgttggcagc attagcgctg ccctttcaag acatttcgtt gtggtcggac aatcaagtgg      4140
     tgctagcatg gctagcgaag aacccggagc atttagaagt gtttgtgcgg aaccgggtta      4200
     gtgagattaa ctctaccgga catcagttta agtggaagta cgtaaatacg ctggaaaatc      4260
     cagctgacat tgtgtcgcgt ggccagtcaa cccacgcact tgagaagaac gatctttggt      4320
     ggaatggacc attgttcctg cgtagtgaag tgtatcaggt ggtggctcca gaaccactgt      4380
     ctgatgaaga tgttcgtgag ttgcggcagg tcgctgcaac atctgcggtg acagttttgg      4440
     agagattgcc agtattcacc aagttcgagt cttcaggaag ctgcaacgag ttctggcata      4500
     cgttttgcgt ttttgccgga atgcaaagga gaaggtggcc atgaagcgaa tcgtcgcgcg      4560
     gtttccaacc gtgcttgaaa tgcgccactc tttgaaagcc atcaccaggg tggttcagtt      4620
     gcaacatttt ggtaaggagg tagccatgat cgagtccggt gagtactgca aaagattttc      4680
     tgcgttaaat ccctttttgg acgatggaat gattcgcgtc ggcggacgac tgcgacattc      4740
     aaatttacca tacggcgtta agcatcagtg ggtcttacct aagaatgatg aaaccatcca      4800
     gcggttgatt caagcgatac atcgtgagaa cctacatatt ggaccgtcgg cgctgctggc      4860
     ccagcttcgt cggcaatttt ggattctggg agcccgttct gctgtacgca aggtaacacg      4920
     aaactgcgtg cggtgtttca ggctcaaacc cccgtgcgcc agccaattca tgggagatct      4980
     tcccgtcgca aggtgcgaca aggctcccgc ttttgtgaag gttggtgttg actttgcggg      5040
     ccccatactt atcaagcaga ctggaaggaa ggtggccccc gttaaaggat acgtgagcgt      5100
     gttcgtctgt atggtgacca aggccattca tctggaggtg gtagaagatc tatcggccga      5160
     tgcgtttatt gctgctctgc agcgattcgt ttctcgtcgt ggtgtgccag aacagatatt      5220
     ttccgacaat gggacaaatt ttgtcggtgc acgcaacgaa ttgaacgagc tgtaccgtct      5280
     cttcaaggga caagtaaccg agctcaagat caatgagttc tgccaacccc ggcagatcga      5340
     atggaagatg attcccccaa atgcgccaca catgggcgga atctgggagg caggagtaaa      5400
     gagcgtcaag accattctca agaagaaatg ccaatcaagc ctcctaacga tgtccgagtt      5460
     ttcgactttg ctctgccaga tcgaagctca actaaattcc cggcctttat acgctccctc      5520
     tgaagaccct tcggagctcg agccgttaac cccaggtcat ttcattattg atcgtccact      5580
     gactgccatt ccggagccta gctatgatgg aatcccagct aaccgactct ccagatggca      5640
     atacgtccag cgcctgcgtc aagagttctg gaagcgctgg tccgaagaat acctgttgga      5700
     gttgcaggta cgacagaagt ggagcaagaa gaaggagaac attctacctg gaacagtggt      5760
     ggtaatcaag gatgacaact taccgcctca gcaatggaag ttggggaagg tcgagtcaac      5820
     ctacacagga tcagatggac tggtccgcgt ggtagatgtg cgtaccaagt caggagtgct      5880
     caagcgtcca atccataagc tggctcctct acctatattg gacaatcagg ctgtcaacga      5940
     gaacaaggtt cccgcggggg agga                                             5964
//
ID   BEL-80_AA-LTR repbase;    DNA;    INV; 403 BP.
XX
AC   supercont1.324;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-80_AA_;
KW   BEL-80_AA-I; BEL-80_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-403
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.324; Positions  202287  201885.
XX
SQ   Sequence 403 BP; 103 A; 87 C; 99 G; 114 T; 0 other;
     tgttcgagcc gttcgccccg aatgaatttt ttgtcagtgc atcgcccagc cgcagcctgc        60
     tgagttgcgt gatgcacgaa aggacatcgt gtgatgcaac cagccgcagc cgcacgaaac       120
     gagcgcgcaa aaaatgagcg cgtaaatttt gaggatgttt tctacccgcg attggaagac       180
     atctttgttc gccgtgcttc caacgtgtta agacgtgtag tcgcaattaa agcaaagtga       240
     attctcttaa tattaaagtt atgtaaatag gtgtaaatag aagtttgaac tgttaagcaa       300
     gtgttttcat ccggtatcgg ttccctggtt aagtggtcgt ctcggagatt cgtcggtccg       360
     cctatgtcga agttttttaa gaaatacagt ccactctcgt aca                         403
//
ID   BEL-80_CQ-I repbase;    DNA;    INV; 5359 BP.
XX
AC   AAWU01021955;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-80_CQ_;
KW   BEL-80_CQ-LTR; BEL-80_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5359
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 301-301 (2011).
XX
DR   GenBank; AAWU01021955; Positions   44816   39458.
XX
CC   Positions [4381-4986] - Integrase core
CC   'GTTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..5328
FT                 /product="BEL-80_CQ-I_1p"
FT                 /translation="MDKLERVRNAQLAQVKRELAAAEKLGERKASIGEATD
FT                 RLELLKELAGKFRQTQESIEQEQENPEVIASVHDYREEFNESYYAARNLLE
FT                 KYIVDNNPDETGSTDSGHTVIDGNGELREAMRLLLNTQRTMMERSGNAGGN
FT                 LEPAGNNVPNVRLPAIDVPKFSGERKHWSSFKDIYTTTIHNRNDLRPSLKM
FT                 QYLVSYVDGFAQQLVGRYSISDAHYEEAWTALTDYYDKKKFTVFALVREFV
FT                 EQPAVEEAVSGELRKLATTSDEVVRQLNALGAEFNTRDPWLIHILLEKLDD
FT                 ETRSLWAQRIVEVDNPSLDDFLKFLGNRCDALETCSAFSRKVSPNVPKKET
FT                 TKKPPSEKKVQSLYSAAVEEKCAKCSKEHPLYQCDEFRKMDLQCKRDLVAQ
FT                 EKLCYNCLRSSHIAKSCSSKSVCRNADCKQRHHTLLCPKSTVRQVVNESAT
FT                 EENSTIDPVVTMVAQVPADVPRKAFILPTAIIRIRGADGRLIQARALVDSG
FT                 SEASLISEACVSKLGLPRANGKVAVTGMGQQAAGTTRGVVKLEIANRFDDT
FT                 SVLQTMAYVMGKLTSTLPTQLCQVHPSLLDRDVQDFLADPAYQRPGPIDLI
FT                 LGCDVFLALLRPGQVKDDGGVPVAQNTIFGWIVSGNQAIYTHRIQANVSIV
FT                 NLHAELDINRTLRMFWEQEEIPKPAQLTPSEEAAAEFFKSTLSREKDGRFI
FT                 VRLPFDESKPALGESLGPAIKRLRSMERHFRSDSEFHKLYSDFLTEYQALG
FT                 HMEEVPANEVEVEAGKCCYLPHHAVVKDSTTTKLRVVFDASCATSTGVSLN
FT                 DRLLAGPNVNQELFSVFLRFRTYKVAFTADAEKMYRQVWVHPADRDYQRIV
FT                 FRETEDQPIKHYRLCTVTYGTKCAPYLAIESMKQAASEFKLKYPEAAKKIE
FT                 LDTYVDDFLSGAQTVQRAKELKSQVVEILESAGFHLRKWTTNCPELLQHAA
FT                 ETDQTPVEVKLDERANAVKALGILWHPKEDEFSFKVNLSPNSVNTKRQLLS
FT                 DSSKLFDPFGWLAPVAIKIKILYQHLWLCELSWDDGLPATVEPAWKEIKET
FT                 LHLLEQIRIRRFAPNKDGKIELHGFSDASEAAYSAVVYAREPDETGQAEMN
FT                 LLAAKTKVAPIRQVCVPRLELNGGTLLANLMLAIVAALSHLEVELYAYTDS
FT                 SIVLHWLSAHPRKWKTYVANRTSAILEVLPRDRWSHVRSENNPADCASRGL
FT                 TPAELVAHPMWPHGPKEMNSKDVSWKNVPLEPIDDEDLLETRQLKVLHSTA
FT                 MVIRTDYSIESRLLARRSSYTLIVRTLAYVNRFLLALKSEDANLEPGLSPN
FT                 EIYDAKAQLARFAQHGAYEKEIQLLLKGEELPAKDKLSALHPFLDGQGTMR
FT                 VGGRLQNSSHPYDVKHPIILPGSHKVTELLLRELHLRNLHAGPTLLTATVN
FT                 QQYWVIGLQAAVRQAVQGCARCVRLKGKTASQLMGSLPVTRVMGTRAFAHV
FT                 GVDYAGPVKVHASCVRGVKTTKGYIVVFVCMATKAVHLELASDLSTNTFIG
FT                 ALKRFVSRRSHPNEMWSDCGTNFVGADTWLKEIRGALEKHNVAANRFLTNL
FT                 GIKWVFNPPSAPHRGGLWEAAVKSAKKHLVAVLGSDAATFEELSTVLTQVE
FT                 ACLNSRPLCPLSADPDSYEALTPGHFLVGQPLNLIPEPGVQHLPMNRLDKW
FT                 QLVHRHTTDIWSRWRDEYLAHLQPRTKWRTTETNVKEDQLVLVKNDNAPPT
FT                 QWELARIVKLHPDASGVVRTVTLRRGQAEYLRPVQKICVLPTD"
XX
SQ   Sequence 5359 BP; 1351 A; 1388 C; 1555 G; 1065 T; 0 other;
     tatggtcctt caagtccgga tagtcgggaa ccggtgaaca tggacaaact ggaacgggtc        60
     cgaaatgcgc agcttgcgca ggtgaaaagg gagcttgcag cggccgaaaa gctcggcgaa       120
     cggaaagcat ccattggaga agcgacggat cggctggagc tgctcaaaga actcgccgga       180
     aagttccggc agacacagga gagcatcgaa caggagcaag agaatccgga ggtcattgcc       240
     tcagtccacg actatcggga ggaatttaac gaatcgtact acgccgcacg gaatcttttg       300
     gaaaagtaca tcgttgacaa caatccggat gaaacaggtt ctacggatag tggccacacg       360
     gtgatcgatg gaaacggcga actgcgcgaa gcgatgcgac tactgctgaa cactcagcgt       420
     accatgatgg agcgttcggg gaatgcaggt ggaaatctgg agccggcggg gaacaacgta       480
     ccgaatgtta gacttccggc gatcgacgtg ccaaagttca gcggggaacg gaagcactgg       540
     agctctttca aagatatcta caccacgacc attcacaacc ggaacgattt gagaccgtcg       600
     ctgaagatgc agtacttggt ctcgtatgtg gacgggttcg cgcagcagct agtaggccgg       660
     tactcgatct ccgatgccca ctacgaggag gcatggacag cgctcacgga ctactacgac       720
     aagaaaaagt tcaccgtatt tgccttggtt cgagagttcg tggaacaacc ggcggtggaa       780
     gaagcagttt ctggcgaact tcgaaagctc gccacgactt ccgatgaggt cgtgcgtcaa       840
     ctcaacgcac ttggagctga gttcaacaca cgagatccgt ggcttatcca cattctgctg       900
     gaaaagctcg acgacgaaac gcgttcactg tgggcgcaac gtattgtcga agtggacaac       960
     ccctcgttgg acgacttcct gaaatttttg ggcaaccggt gcgatgcgct ggaaacctgc      1020
     tcagcgtttt cgaggaaggt gtcgccgaac gttcccaaga aggagaccac gaagaaaccg      1080
     ccgtcggaga agaaagtgca gtcgttatac tcggcggcgg tggaggaaaa gtgcgcgaaa      1140
     tgttccaaag aacatccgtt gtaccagtgt gacgaattta ggaagatgga cctgcagtgc      1200
     aaacgggatc tggtggcaca ggaaaagttg tgttacaact gtttgcgatc gtcacacatt      1260
     gccaagtcct gcagttcgaa atcagtgtgc cggaatgcgg actgcaaaca gcgtcaccac      1320
     acgttgttgt gcccgaaaag tacggtgaga caagtggtga acgagagcgc aacggaagaa      1380
     aactccacga tcgatcctgt cgtcacgatg gtggcgcaag tgccagcgga tgtgccacgg      1440
     aaagcgttca ttctgcccac agccatcatc cgcattcggg gagctgacgg ccgtctgatt      1500
     caagcacggg cactcgtcga ttccggttca gaagcatcgt tgatctcgga ggcctgcgtt      1560
     agcaaactcg gactgccacg tgccaacgga aaggtggcgg tcaccggtat ggggcaacaa      1620
     gctgctggaa caacgcgagg agtggtgaag ctcgaaattg ccaaccggtt cgacgacaca      1680
     agcgtgctac agacgatggc ctacgtcatg gggaaactga cgtccacact cccaacgcag      1740
     ctctgccagg tgcatccaag cctcttggac agagatgttc aagatttcct cgctgatccg      1800
     gcgtaccagc gtccggggcc gattgatttg atcctgggat gtgatgtctt tcttgctcta      1860
     ttgcggccgg ggcaagtcaa ggacgacgga ggggttcctg ttgcgcagaa cacaatcttc      1920
     gggtggattg tgtccgggaa tcaagccatc tacacgcatc gtatccaagc caacgtctcg      1980
     atagtcaatc ttcacgcaga gttagacatc aatcgcacct tgcggatgtt ttgggagcag      2040
     gaagagattc cgaaaccggc gcaacttact ccatctgaag aagctgccgc cgagtttttc      2100
     aagtccacgc tttcacggga gaaagatgga cgtttcatcg tacgattgcc gtttgacgag      2160
     tcgaaaccgg cgcttgggga atcgctgggt ccagccatca aacgattgcg atcaatggaa      2220
     aggcatttcc ggagcgattc ggagttccac aagctttact ccgatttcct caccgagtac      2280
     caggccctgg ggcacatgga agaggtgcca gcgaacgagg tggaagtaga agctggaaag      2340
     tgttgctatc tacctcacca cgccgtcgtc aaggacagca cgacaacaaa attgcgagtg      2400
     gttttcgacg cctcctgtgc aacgtcgacc ggagtgtccc tcaatgacag gctgcttgca      2460
     ggacccaacg tgaaccagga gctgttctct gtgtttctgc gctttcgaac ctacaaggtg      2520
     gcgtttacgg cagatgctga aaagatgtac cgacaggtgt gggtgcatcc agcggaccgg      2580
     gactatcagc ggatcgtgtt ccgcgaaacg gaggaccaac ccatcaagca ctaccggctg      2640
     tgcaccgtta cttacggcac caagtgcgct ccgtacttag caatcgaatc gatgaagcaa      2700
     gcagccagcg agttcaaact caagtatccg gaggcggcca agaagatcga gttggacacg      2760
     tacgtcgacg attttctctc cggagcacaa acggtgcagc gggcgaagga gttaaagagc      2820
     caagtcgtgg agattctgga gtccgctggt ttccacctgc ggaaatggac cacgaactgc      2880
     ccggagctac ttcaacacgc ggcggagaca gaccagacgc cggttgaagt gaaactggac      2940
     gaacgagcga acgcggtcaa ggcacttgga attttgtggc atcccaagga ggacgaattc      3000
     tcgttcaagg tcaacctcag cccgaacagt gtcaacacca aacgacaact actttcggat      3060
     tcttccaagt tgtttgaccc gtttggatgg ctggcacccg tggccatcaa aatcaagatt      3120
     ttgtaccagc acttgtggct ctgcgaactc tcttgggacg atggtctgcc tgctactgtt      3180
     gaaccagcgt ggaaggagat caaggagacg ctacacctcc tggaacaaat acgcatcagg      3240
     cgattcgcac ccaacaagga cggcaagatc gagttgcacg ggttttcgga tgcatcggaa      3300
     gcggcgtact cggcggtggt gtatgcgagg gaacctgacg aaactggaca agcggagatg      3360
     aacctactgg cagctaagac gaaggtggcg ccgatacgcc aagtgtgcgt acccagactg      3420
     gagttaaacg gtgggactct tctggcaaat ctgatgctgg cgatagttgc ggcgctttcg      3480
     catctcgagg tggaactcta cgcatacacg gacagcagca ttgttcttca ctggctatct      3540
     gcgcacccac gcaagtggaa gacgtatgtg gccaatcgta cgtcggccat tctcgaagtg      3600
     ctgccacgtg atcgctggag ccacgtgcga agcgagaaca acccggcaga ctgcgcctct      3660
     cgtgggctca ccccagctga gctggtagcg cacccaatgt ggccccatgg acccaaggag      3720
     atgaactcga aggatgtcag ctggaagaac gtaccactcg aaccgataga cgacgaggac      3780
     ctgttggaaa cccgccagct caaggtgttg cacagtactg caatggtcat ccgaacggac      3840
     tacagcatcg agtcacggct gttggcacgg cggtcgagct acacgctcat tgtacgtaca      3900
     ctggcgtacg tcaatcgttt tctgttggca ctcaagtctg aagatgcaaa cttggaacca      3960
     ggtctgtccc caaacgaaat ttacgatgcg aaagctcagt tggctcgatt tgcacaacac      4020
     ggcgcgtacg agaaggaaat tcagctgcta ctgaaaggcg aagaactccc ggctaaggac      4080
     aagctgtctg ctcttcatcc gtttcttgat ggccaaggca caatgcgagt aggagggcgg      4140
     cttcagaact cctcgcatcc gtacgatgtc aagcacccca tcatcttgcc gggcagccac      4200
     aaggtgacgg agctgttgct gcgagaacta catttgcgaa acctgcacgc cggacctaca      4260
     cttctcacag ctacggtcaa ccaacagtac tgggtgattg gactccaagc agctgttcgt      4320
     caagcggttc aaggttgcgc ccggtgcgtg cggctcaagg gaaagacggc ttcgcaactc      4380
     atgggcagcc tgcctgtgac tcgagtgatg gggactagag catttgcgca cgtcggcgtg      4440
     gattacgcag gtccagtgaa ggttcacgca tcctgcgtgc gaggcgtaaa gaccacaaag      4500
     ggatacatcg tagttttcgt gtgcatggcc acaaaggccg tccatttgga actcgccagt      4560
     gatttatcta ccaacacctt cattggcgca ctgaagcggt tcgtatcgag gcgttcgcac      4620
     ccgaacgaga tgtggtccga ctgcggcaca aacttcgtgg gagcagacac gtggctgaaa      4680
     gagatccgag gtgcgctgga gaagcacaac gtagctgcta accggttcct gactaatttg      4740
     ggcatcaaat gggtgttcaa tccaccatca gcaccgcacc gtggtgggct ctgggaggcc      4800
     gcggtaaaga gtgcaaagaa gcatctggtc gcggtgctag gatccgacgc agctacattt      4860
     gaggaacttt caacggtgct gacgcaagta gaggcatgcc tcaattcacg tccgttgtgc      4920
     ccactttcag cggacccgga tagctacgaa gcattgacac ctggtcactt cttagttgga      4980
     caaccgctaa acctcatccc ggaaccaggt gtgcagcacc tcccaatgaa tcgcttggac      5040
     aagtggcaat tggtacacag acatacgacg gatatttgga gccgttggcg ggatgaatat      5100
     ctcgctcacc tgcagccaag aacgaaatgg aggacgaccg agaccaacgt aaaggaggat      5160
     cagctggtgc tggtcaaaaa cgacaacgca ccgccgactc agtgggagtt ggccaggatt      5220
     gtgaagctgc acccggacgc atctggagtt gtccggacgg taacgctgcg acgaggtcaa      5280
     gcggagtact tgcgccccgt tcaaaagatc tgtgtactac caactgattg aggcacaggt      5340
     gcctcaaggt gggggagta                                                   5359
//
ID   BEL-80_CQ-LTR repbase;    DNA;    INV; 287 BP.
XX
AC   AAWU01021955;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-80_CQ_;
KW   BEL-80_CQ-I; BEL-80_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-287
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 302-302 (2011).
XX
DR   GenBank; AAWU01021955; Positions   39457   39171.
XX
SQ   Sequence 287 BP; 80 A; 64 C; 73 G; 70 T; 0 other;
     tgttctggtt gcactgccat atttccccaa ccagcgtgat gcacaaccct gcgcatctcg        60
     ttcagctgtg gtttggcgcg ccgttaacgg cggatggaag gttcgagaaa gcaagcaaca       120
     aaaggaaggt tcaagaagaa gaaaaatcgg cgttcatcag catcagtctt gctttaacac       180
     gcgaagcaaa aggaagaata aaagcggaag ttagttagtt attccggcgt gttttatttc       240
     gtgtccgttc cgggttcagc gaccaagtcc aagttctacg ttaaaca                     287
//
ID   BEL-810_AA-I repbase;    DNA;    INV; 5763 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-810_;
KW   BEL-810_AA-I; BEL-810_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5763
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5763
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2161-2161 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..5696
FT                 /product="BEL-810_AA-I_1p"
FT                 /translation="MSKNRGKVALPGVSCVVCKDPDDSRMVCCDDCGGWFH
FT                 FMCVGVDEGIEEVDWSCTACEAKRAAQITPTHLTVPAQDRTAKSTHSNQDQ
FT                 QNKQLERQFMEFQKQMEDMQRKFEEQRQSYERMLEEKDREMTNAVNDLKHQ
FT                 FQRRLEQREQQVQDELMIPPAVALPNANSTTLGGGNHATTDVCNMIQLVQK
FT                 QLEEMAKKQDLETKRLEGRLRAMEIGTNDPVGRSRSGLNVNADSFDPDRSS
FT                 GQSSVAISHELSRSQLAARQAVAKELPIFAGNPEEWPLFIATYESTTKMCG
FT                 FSDEENLLRLQRSLKGKALEVVRSRLLYPAGLGGVISTLRTLFGRPEVIVH
FT                 SLVCKIREMPAPKTEKLATLIDFGVAVQNMCATIVACGLNEHLCNVALLQE
FT                 LVERLPPTIKLDWARHRQTLQTITLSDFSTWLGTLVEAACIVTVPSSISTY
FT                 TGKPEKRVRKEEVHVHVDTSSSQSFSTSATPKVTSKPVSKQCVICHGGCSS
FT                 VGSCKKFQDLDIAARWEALKQNKLCRKCLAKHFGACVVKQPCGRNGCSYMH
FT                 HELLHDDSRYQQREKTQAPTSQAPTQSPTETCNTHVSNDNKVLFRYVPVLL
FT                 HGRGKSVRTFAFLDEGSSATLMEHDLLKELNLEGKPYPLCLGWTADHQRQE
FT                 TNSVMLPLEISGLKDTSSYWIPKVHTVNSLALPQQTLSMKELSQQYHYLNS
FT                 LPVNSYRNVRPRILIGMDNCHLGHALDSREGSNNEPIAARTRLGWIVFGPC
FT                 STTSQSVTRFSGHHSFHLCPCCERNDAELHSTVKAYFSLDSLGIMTAVKPL
FT                 LSKDDERAEQLLKSLTHVKDKRYETGLLWRYDDVRLPDSKEMAMRRLVCLE
FT                 KRMQRDPELTEVLNQKIRDYERSGYIEKLTEHQLSEKFERVWYLPIFPVVN
FT                 PNKPAKLRIVWDAAAKVAGTSLNSFLLTGPDQLTSLPSVLRRFREFRIAIT
FT                 GDIREMFHQVTVNKNDQQCQRFLWRNGDQKRSPDVYAMKVMTFGATCSPSC
FT                 AQYVKNHNAQRFQEQFPRATEAIIEEHYVDDMLTSEETEEDATQLAKDVRF
FT                 IHAEAGFEIRNWLSNSKQVLRELDAKPGEKSLNLSNGMGTEKVLGMWWCTA
FT                 TDSFTFKVSPRISAELLQGRIIPTKRQILSTLMMIYDPLGLLANFLMFLKI
FT                 LLQEIWRSGVSWDDQIKCEQFEKWKTWLRVLPQVENVRVPRCYRIKTSVAE
FT                 QNMIQLHVFVDASENGFAAVAYLRFQENGEVECALIGAKTRVAPLRFVSIP
FT                 RLELQAAVIGARLANDIMETHKLKPAQRFFWSDSRDVLCWLNSDHRKYSQF
FT                 VAVRVSELLELTETNEWYWIPTKLNVADEATKWQKLPDLSPASRWYSGPEF
FT                 LLKSIEQWPVTKSQFSQTEEEKRPHLLHHYVQSALFCWENFSNWKVLLRRT
FT                 AFVRRFPSNLRRRLKKNAIVTGPLTQEELKDAELFIIKQAQTAEFAVEINL
FT                 LKKPNPVPWKNVLPKGSSLYKLSPFLDEKGLLRMKGRIDACDVVDESTKRP
FT                 ILLPKRHPVTDLIIASVHQQYFHMNHQTVLNEIRRKFYVPQIRSTFNRVRG
FT                 RCQYCKNRQSMPVAPEMSDLPATRLKAFCRPFSYIGIDYFGPINVVVGRRT
FT                 EKRWGVLITCLTVRAIHIEVAHSLTTNSCILAIRNFVARRGAPLEIVSDRG
FT                 TNFIGASRELKEALKNVNQEKLMEHFVTTDTKWSFNPPASPHFGGVWERLV
FT                 QSVKKALKHTQLTRTPTDELLKNMLTEIEMIVNSRPLTELPLDGELSEALT
FT                 PNHFLLGSSDGSKPPIAFDDSSYALKHTWKMSQIYANRFWRRWISEYLPTL
FT                 TRKTKWFHRAKPVAEGDIVIIVDETLPRNCWPRGRVVRTIQSKDGQVRRAL
FT                 VQTATGMLERPP"
XX
SQ   Sequence 5763 BP; 1601 A; 1293 C; 1517 G; 1352 T; 0 other;
     ttttaaaaaa ctcgtttatt cgcgatcggg tggcggaaat tatgtcgaag aatcgtggga        60
     aagttgcgtt gccgggtgtg agttgcgttg tgtgcaaaga tccggacgac agtcgaatgg       120
     tgtgctgtga cgattgcgga ggatggtttc acttcatgtg cgtgggcgtt gacgaaggga       180
     tcgaagaagt agattggagt tgtacagcgt gcgaagcaaa gcgggcagct cagatcacac       240
     cgacccattt gacggttcca gcacaagata gaacggccaa gtcaacccac agcaaccagg       300
     atcagcagaa taagcagcta gaaaggcagt tcatggagtt ccagaagcaa atggaagata       360
     tgcagcggaa gttcgaagag cagcgacagt cgtacgagag gatgctcgag gagaaagacc       420
     gtgagatgac gaatgcagtt aatgatttga agcatcagtt ccagcgccgt ttggagcaaa       480
     gggagcaaca agttcaagat gaattgatga ttccacctgc agtggcttta cctaatgcaa       540
     attcgaccac gctaggaggg ggaaatcatg ccacgaccga tgtttgcaac atgatccagc       600
     tggtgcaaaa gcagcttgaa gagatggcga agaaacaaga tttagagacg aagcgtcttg       660
     aaggtcgatt aagggcgatg gaaattggaa ccaacgatcc tgtaggaagg agtagaagtg       720
     gtctgaacgt taatgcggat tcatttgacc cagaccgtag ttctggtcaa tcttcggtag       780
     ctatttctca cgagctcagt agaagtcaac tagctgcgcg gcaagcagtg gcaaaggaac       840
     ttcccatctt tgccggaaat cctgaggagt ggccactatt catcgccacc tatgaaagca       900
     caaccaaaat gtgcggtttc agtgacgagg agaacctact tcggcttcag cggagtttga       960
     agggcaaagc tctcgaggtg gtaaggagtc ggttattgta tccagccggg cttggaggtg      1020
     taatcagtac gttacgaacg ctgttcggtc ggccagaagt gattgtgcac tcgctggtgt      1080
     gcaagattcg ggaaatgcca gcgcctaaga cggagaaatt agcaactctg atcgatttcg      1140
     gtgtagcagt ccagaacatg tgcgcaacga tcgtggcctg tggattgaac gagcatcttt      1200
     gcaatgtggc acttcttcaa gagctagttg aaagattacc gcctactatt aagcttgact      1260
     gggcgagaca tcggcaaacg ttgcaaacaa tcacactatc ggacttcagt acctggttgg      1320
     gaacgcttgt agaagcagca tgtatagtca ctgttccatc ttcaatcagt acatacactg      1380
     gaaagccaga gaagcgtgtt cgaaaggaag aagttcacgt ccacgttgat accagttcaa      1440
     gtcagagctt cagcacatcg gccaccccca aagttacgtc taaaccagtc agcaagcagt      1500
     gtgtcatttg ccatggagga tgtagcagcg taggatcttg taagaagttc caggatcttg      1560
     atattgcggc acgttgggaa gcgctgaagc agaacaagtt gtgccggaag tgtcttgcga      1620
     agcatttcgg ggcgtgtgtc gtgaagcaac cttgcggaag aaatggctgt tcatatatgc      1680
     atcatgagtt gttgcatgat gattccaggt accagcaaag ggagaaaact caagcaccaa      1740
     cttcacaagc gccgacgcaa tctcctactg aaacatgcaa cactcatgta agcaatgaca      1800
     acaaagttct gtttcgttac gttccagttc tcctgcatgg ccgaggaaaa tctgttcgta      1860
     ctttcgcctt tttggatgaa ggttcatctg caacgttgat ggagcatgac ctactgaagg      1920
     aattgaacct cgaaggcaaa ccgtatccct tgtgtttagg ctggacagct gatcatcagc      1980
     ggcaggagac gaactctgtg atgcttccgt tggaaatttc tggactgaaa gatacaagca      2040
     gttactggat tccgaaggtg catactgtga atagtcttgc tctgcctcag caaactcttt      2100
     ctatgaagga attgtcgcaa caatatcact atctgaatag tttaccagtc aactcttatc      2160
     gtaacgtacg accgcggata ctaattggta tggacaactg tcacttgggc catgcgctgg      2220
     acagcagaga aggtagcaac aacgaaccaa tcgctgctag aacacgtctg ggatggatag      2280
     tattcggacc ttgctctacc acatcccaat cagtgacacg attcagcgga caccatagtt      2340
     ttcatttgtg tccatgctgc gagcgtaatg atgcagagct gcacagcaca gtaaaagcgt      2400
     acttttcgct ggacagtctg ggaattatga ccgcagtcaa gcctctcctg tcgaaggatg      2460
     acgagcgtgc cgagcagtta ctgaaatcac tgacacatgt gaaagacaag cgatacgaaa      2520
     caggtttgct ttggcgttac gacgatgtcc gactaccaga cagcaaagaa atggccatgc      2580
     ggcgtctagt ttgtcttgag aagcgaatgc aacgcgatcc agaactgact gaagtgctaa      2640
     atcaaaagat tcgtgactac gaacgcagcg gttatattga gaagctgacg gaacatcaac      2700
     tgtcggaaaa attcgagcgc gtttggtacc tacctatttt ccccgtggtg aacccgaaca      2760
     aaccagccaa acttcgtatt gtatgggatg cggctgcaaa ggtggctgga acttcactga      2820
     actcttttct gctcaccggt ccagatcagc tcacttctct tccgtccgtt ctccgtcgtt      2880
     tccgtgaatt ccgcatagcc attactggcg atatcagaga gatgttccat caagtgacag      2940
     tgaacaagaa cgatcaacaa tgtcagaggt ttctgtggcg gaatggtgat caaaagcgaa      3000
     gcccagatgt ctacgccatg aaagttatga cgttcggggc tacgtgctcg ccaagctgtg      3060
     cgcagtatgt gaagaaccac aatgcgcagc gcttccaaga gcagtttccg agggctactg      3120
     aagcaatcat tgaagagcat tacgttgacg acatgctgac tagtgaggaa acggaggaag      3180
     atgcaacgca gttagcaaag gacgtccgtt ttattcatgc cgaagctggt ttcgaaatac      3240
     gcaattggtt gtctaactcc aaacaggtac tgcgagagct ggatgcgaag cctggtgaga      3300
     aaagtctgaa cctgtcgaat ggaatgggaa cagaaaaagt ccttggcatg tggtggtgca      3360
     ctgctaccga ttcgtttaca ttcaaagttt cccctagaat cagcgcagaa ttactgcaag      3420
     gccggattat tccgacgaaa agacagattt tgagcacgct gatgatgata tatgaccctc      3480
     ttggactgtt ggcgaacttc ttgatgtttc taaaaatcct acttcaggag atttggcgga      3540
     gtggcgtaag ctgggacgat cagatcaagt gcgagcaatt cgaaaagtgg aagacatggt      3600
     tacgagttct tccgcaggta gagaatgtcc gcgtaccaag atgttaccga atcaagacta      3660
     gtgttgcaga gcagaatatg attcaactgc atgtgttcgt ggacgcgtca gaaaacggat      3720
     ttgctgcggt tgcgtatctc cgatttcaag aaaatggtga agtggaatgc gcgctcatcg      3780
     gggcaaaaac acgggtagct ccattgcgat tcgtgtcgat cccgaggctg gaacttcagg      3840
     cagcagtaat cggagcccgt ttagcgaacg atatcatgga aacacataag ctaaaacctg      3900
     cgcaaaggtt cttctggtca gactcacgcg acgttctttg ctggctcaac tcggatcatc      3960
     ggaaatacag tcagtttgtg gcggtgcgag ttagtgagct actggaatta acagagacta      4020
     acgagtggta ctggattccg acaaagctaa atgttgccga tgaagccacg aagtggcaga      4080
     agctgccaga tctgtctcct gcgagtcgtt ggtatagtgg tccagaattt ctgttgaagt      4140
     cgatagagca atggcctgtt acaaaatcgc agttcagtca aaccgaggag gagaagcgtc      4200
     cgcacttgct tcatcattac gtacagtcgg cgttattctg ttgggaaaat ttttcaaact      4260
     ggaaagttct tttgcgtcgc actgcctttg tgagacgatt tccctcaaat ctacgtagac      4320
     gtctgaagaa aaacgcaatc gttactggcc cgttaactca agaggaacta aaagatgccg      4380
     aactgttcat aataaaacaa gcacagactg ctgagtttgc agtggagatc aatctgctga      4440
     agaaacctaa ccctgtacca tggaagaacg tgttaccgaa ggggagctcg ctatataagc      4500
     ttagtccgtt tctagacgaa aaaggactgc tgcgaatgaa gggtcgcata gatgcctgtg      4560
     atgtagtaga cgagagcaca aagcgaccaa ttctgctacc caagcgtcat ccagtgacag      4620
     acctcatcat cgccagcgta catcagcaat atttccacat gaatcaccag actgtactca      4680
     acgagattcg gcgtaaattc tatgttcctc agatccgctc aacgttcaat cgtgtacgag      4740
     gtcgttgtca gtactgcaag aatcgtcagt cgatgccagt tgctccagag atgtctgatc      4800
     ttccagctac acgtctgaag gctttttgtc gtccattctc gtacatcggc attgactact      4860
     tcggaccgat aaacgtggtt gttggacgac gaaccgagaa acgctggggg gtgttaatca      4920
     cctgccttac tgtaagagcg atacacatcg aggttgcaca cagccttaca accaactctt      4980
     gcattctcgc tattagaaac ttcgtcgcaa gaagaggtgc acctttggaa atagtcagcg      5040
     atcgcggtac aaacttcatt ggagctagtc gagaattgaa ggaggcgttg aaaaacgtga      5100
     accaggagaa gctgatggaa catttcgtca ccactgatac caaatggtcg ttcaatccgc      5160
     ccgcatcccc acacttcggc ggagtttggg aacgacttgt tcaatccgtg aagaaagccc      5220
     tgaagcacac ccaactcaca cgcacaccca ccgacgagct gctgaaaaac atgctgactg      5280
     agattgagat gattgtcaac tcacgaccgc tgacagagtt accgttggat ggcgagcttt      5340
     ccgaagcact cactccgaat cattttctac ttgggtcgtc agatggttcc aagcccccga      5400
     tcgcgttcga cgatagcagc tacgctctga aacacacctg gaagatgtca cagatctacg      5460
     ccaatagatt ttggcgacgg tggatttccg aatatctgcc gacgttaacc cgaaagacga      5520
     agtggttcca cagagccaag cccgtagcag aaggagacat tgtcatcatt gtcgacgaga      5580
     cattgccgag gaactgctgg ccgagaggtc gtgtggttcg tacaatacag tcaaaggatg      5640
     gacaggttcg ccgagctctg gtacagactg ctactggtat gttggagaga ccaccgtaag      5700
     cttgcggtgt tggacgtggt gcactgtaag tacccggtca gcgaccgaag cactgggggg      5760
     gag                                                                    5763
//
ID   BEL-810_AA-LTR repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-810_AA-I;
KW   BEL-810_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-868
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-868
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2028-2028 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 868 BP; 283 A; 186 C; 155 G; 244 T; 0 other;
     tgtcgcgact tcgcgtgcga cgccccatac aatcaaacac ctcttatgta ccaacctctt        60
     ttcgatagcc ttgtcgtcga tgacaagcgc ccagccgtct gcgcgccact gtgttggttg       120
     tcagtgtgag tagtaataag aagtaaacga tgataaacgt cagacagata gatagttacg       180
     atcaaaactg caagtcagag tcagaattca acgaattggc gcacaattag tggcttcaat       240
     taatttcagc atttatttaa acgaattcga gttaaaaagt ctgtgaattt tctaagtgta       300
     gtgtacagtc tgtaatttca gttcgtgatt cctctaacag tcactgaaac gttaccagta       360
     ccgctttccc agtaagacga aattagtagg tcgtgcgtca gaataggtta gtgaattgat       420
     ctaaattgta tcctaaaact tactggaaac ttattacaca gtcacagcct agcatctcct       480
     aaagggccat ttacgatttc agtcagtaac agaccaaaac agacataagc aggtatggtt       540
     cgaaagcagt aatacaacaa tcttaaccta tacttaacct aagaaacccc gaattccagc       600
     attcccaaca ccgagtgaat ttacgaagac agaaaagaca ctaaacgtaa gtttttccta       660
     aatttctatt gaattatata aacctagaca cataagacag caaacaactt attctattat       720
     gtacagtata aacttacact accgtatgaa ctatattggc aggagttttt taacgccgtc       780
     gtcattgtcg tcgttgagcc aagttaacac caaatacacg tcgttcaaag aaccggaatc       840
     tgtcttattt tcgttgctat ttgcaaca                                          868
//
ID   BEL-811_AA-I repbase;    DNA;    INV; 5592 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-811_;
KW   BEL-811_AA-I; BEL-811_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5592
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5592
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2162-2162 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           213..5567
FT                 /product="BEL-811_AA-I_1p"
FT                 /translation="MEENEFDAVQSISEQISLQRRKEESRVMEETFKALVH
FT                 QRGAVKGKLTRVKNALVHSDVAPNPNIRNVHFLKLHAKTVENCYSEYNAFQ
FT                 NQVYALPLSDERRREQEERYVEFEALYNELTIQLSTLLEDLTPKPELQPPV
FT                 PPVAGNAIANVAPVIAPQHFIPPLTVPLPTFDGTYEAWYSFKSMFQNVMAR
FT                 YVTESPAIKLYHLRNALVGKAAGVIDQDIINNGDYEAAWAILTDRFQDKRL
FT                 IXDKHIEAIFXLPKIAKDSSTELRKLVDTCVKNVQALENLELQVDGLGEQM
FT                 LINQLASKMDRDTRKVWETKXDPGELSSYAETIEFLKQRCRIXEKVETNSA
FT                 KIENPKPVRPVTKSKTLVSANELQCAVCNNNHELYKCEEFKKKSVSDKYSV
FT                 LRKSGACFNCLGKGHRTTECSSSSTCRKCSKKHHTLLHLEESKKEEMNPPS
FT                 AGNQLAAESSSRAESSAGMVAXVEAANKHQNVVLCVSSDHPKRQTLLTTAV
FT                 VLVYGCGNVLYPCRTLIDSCSQNHFVTERFATQLALKRHRADYQVSGLNGG
FT                 TTRIHNVVRTTVKSRVTSFSTELELLIAPKITSDMPEKSIDVKDWNLPAHI
FT                 ELADPGFNKRGRIDMLLGAEIFWDLIRTERIILAKNLPSLRSTELGWVIGG
FT                 VISEQTPVIARTFCNVVERDDLNDLLKRFWEIEGAGDPRQNVAATTDDCIQ
FT                 HYRSTFQRMPDGRFLVRLPFNERKCELGDSLQMATRRFLVLERRLDQRPEL
FT                 KAEYAAFIHEYERLGHMREIEVDPSEHPASSYYLPHHCVLRPSSVTTKLRV
FT                 VFDGSAKTSTEISINDTLKVGPIMQNDLVSVLLNFRCYRFVFTADIPKMFR
FT                 QILVHTEDAPFQRILWRDDRSQLLKTFELCTVTYGLASSPFHATMTLHQLA
FT                 EDAKEDYPTAAPVLKKSFYIDDALCGAHTTEEARSLCQELLQLLHSGGFDA
FT                 HKWCSNNXAILEGIPRNLWGTTYDVEDAADNAVVKTLGVVWNASQDWFSFR
FT                 IQPPNELSQPVTRKIVLSEIAKFFDPLGLGGPVVTAAKLIFREVGLLNLDW
FT                 DDPVPDTIAERWRSFRSQLPALNDLKVPRWIISEGSKLVELHGFADASDQA
FT                 YGTCLYTRLVLPNGAVKMHLICSKSRILPKKTGKTKPITTPRAELLAALLL
FT                 SREMTKVINSVDIIFDRVTLWSDSQIVLCWIKKSPAXLQLFVANRVIEIQK
FT                 LTNEYQWRYIPTYDNPADLISRGEMPHLLIHRSIWWNGPAALNQEVLQIEQ
FT                 PSPLQDNDLPEIRACLALVKPPVRLAAFDRIGTFARLQRCMSFVVRFAHYV
FT                 LSGREIITKGVPTVXELDEALKLMVRCVQEEAFQPELRALKEGGTHRLRSL
FT                 HPFIDPVDGILRVGGRVKKAFIPYDSRHQMLLPANHPLTELLIRHEHQSNL
FT                 HAGQRALLAIVRQRFWPLKAKNIIRKVIRQCVTCFRXNPMKTTQLMGDLPS
FT                 YRVQPSPAFFHTGVDYAGPFSIKSLTQARKPMITKGYICLFVCLSTRAIHL
FT                 ELVSSLTTDAFLATLRRFIGRRGPVSKIYSDNAXNFVGAEAELEQLSNLFS
FT                 AEQHIKALEEFCGSQSITWSFIPPRSPHFGGIWESGVKSVKHHLKRVVGNQ
FT                 KLTFEEMSTVLVQIESVLNSRPLTPCSDDPSDLTAVTPAHFLVGRQMKCIP
FT                 EPSYTNMKXSTLTRWQLVQAIQQHFWKRWLAEYLPEMQNRQKWFKTTRIQP
FT                 GALVLINDPNVPPMQWQLGRIVETHPGSDNITRVVTLRTARGECKRGVTEI
FT                 SLLPLDSEQFGELK"
XX
SQ   Sequence 5592 BP; 1521 A; 1352 C; 1420 G; 1273 T; 26 other;
     tctttttggt cctttaggag ccggatagtt ccgcggaacg accggaaacg acagtcgacg        60
     ggttttccac cgggaaaact cgattcttca acgaaattgt gaacattcgg tcgaggcgtc       120
     gcgtcggtcg agtgtgcgtg tgtgctgccg acgagctcgc agtgtgtgcg ctctcaagga       180
     cgaacatggc tgaacgtgtt cgacttgttt gaatggagga aaacgagttt gatgcggtgc       240
     agtcgatcag tgaacaaatt tccctgcaac gaagaaaaga agaatcgcga gtgatggaag       300
     agacgttcaa ggctctcgtt caccagagag gggctgtgaa aggcaaattg acacgagtga       360
     agaatgcgct ggtgcacagt gacgtggctc cgaatccgaa cattagaaac gtgcattttc       420
     tgaaactgca cgcgaagaca gtagagaact gttacagtga atataacgca tttcaaaacc       480
     aagtgtacgc ccttcccctc tctgatgaac gacgccgaga acaagaagag cgctatgtgg       540
     agttcgaagc tctgtataac gagctcacga twcagctgag caccctgctt gaagatttga       600
     cgccgaagcc ggagctgcaa cctccggtcc cacctgtagc tggaaatgcg attgcgaatg       660
     ttgctcccgt gattgccccc cagcatttca ttcccccatt gacggttccg ctgcccacgt       720
     tcgacgggac gtacgaagca tggtactcat tcaagtccat gtttcaaaat gtkatggccc       780
     gatacgtmac ggaatcaccc gcaatcaagc tgtatcatct ccggaacgcs ctwgtcggaa       840
     aagcagcggg agtaatcgac caggatatta tcaataatgg cgattacgag gctgcttggg       900
     cgatactgac ggaccgattt caagacaagc gcttgataak cgacaagcac atcgaagcaa       960
     tattcwctct gccgaaaatt gckaaggaca gctcgactga actscgaaag ttggttgaca      1020
     cttgtgtsaa gaatgttcaa gctctcgaaa acctagaact tcaggtcgac ggtttggggg      1080
     agcaaatgct gatcaaccaa ttagcatcga aaatggatcg agacacacgc aaagtgtggg      1140
     aaacgaagca kgatccgggg gaactgtcat cgtatgcgga gaccatcgag ttcctgaagc      1200
     agcggtgccg aataatkgaa aaagtggaaa caaacagtgc caaaattgaa aatccaaaac      1260
     cggttcgacc ggtgacaaaa tcgaagacgc tagtgtcagc aaatgaacta cagtgcgcag      1320
     tgtgcaacaa caatcatgaa ctctataaat gcgaagaatt taagaagaag agtgttagtg      1380
     ataaatacag tgtgctcaga aaatccggtg cttgtttcaa ctgcctagga aaggggcacc      1440
     gcaccactga gtgctcatct tccagtacgt gtcgaaaatg cagcaagaag caccacacgt      1500
     tgttgcatct agaggagagc aagaaggaag aaatgaatcc tccatcagca gggaaccagc      1560
     ttgcagcaga aagtagttcc agagcagaat cgtcggcagg catggtcgct csagtggagg      1620
     cagcaaacaa gcatcagaac gtcgtgcttt gtgtgtcatc cgaccacccg aaaaggcaga      1680
     cactcctgac taccgctgta gtactggtct atggttgtgg aaacgttctc tatccatgca      1740
     gaacgctcat cgactcttgc tcccagaatc actttgtgac ggagcgattt gccactcaac      1800
     tggcgctcaa aagacaccgt gccgattatc aggtcagcgg tttgaatgga ggmactacac      1860
     gaattcacaa cgtagtgcga acgacagtca agtctcgcgt caccagcttt tcgacggaac      1920
     ttgaactgtt aatagctccg aaaatcacga gcgacatgcc ggagaaatca atcgacgtga      1980
     aggactggaa tctgccagcc catatcgagc tcgccgaccc tggcttcaac aagcgtggcc      2040
     gaatagatat gttgctaggg gccgaaatct tctgggacct gatcaggaca gaacgaatca      2100
     ttcttgcgaa gaacctccct tcgctcagaa gcaccgaact aggatgggtg atcggaggag      2160
     tgatttccga acaaacgccc gttatcgctc gcacattctg taacgtggtc gagcgagacg      2220
     atctgaatga tttgctgaaa cgcttctggg aaatcgaagg tgctggagat ccacgtcaaa      2280
     acgtcgctgc aactaccgac gactgcattc agcactaccg aagcaccttt caacgtatgc      2340
     ccgatggaag atttttggtg cgccttccat tcaacgaaag aaaatgtgaa ctgggagatt      2400
     cgctacaaat ggcaacccgg cgatttctcg ttcttgaacg ccgcttagac cagagaccgg      2460
     agttaaaagc agaatatgcc gcattcattc acgagtacga gmgactcggg cacatgagag      2520
     aaatagaagt cgaccctagc gagcatcccg catcatccta ctatttgccc catcactgtg      2580
     ttttgcggcc aagtagtgtg acgacgaaac tgcgggttgt ttttgatggt tccgcaaaaa      2640
     catcgactga aatctccatc aatgatacgc tgaaggttgg cccaatcatg caaaacgatt      2700
     tggtgtcggt cttattgaat ttcaggtgct atcggttcgt cttcacggcc gatataccga      2760
     agatgttccg tcaaatactg gtacacactg aagatgcacc atttcagcgc atactatgga      2820
     gagatgaccg ctcacaactc ctgaagacgt ttgaactttg cacggtgact tacggmttgg      2880
     cttcgtcgcc gtttcacgcc acgatgacac tgcatcaatt agctgaagac gctaaggagg      2940
     actaccctac agctgcgcct gttttgaaga aatcgttcta catcgatgat gctctttgtg      3000
     gagcgcacac aaccgaagag gcacgatcgt tgtgtcaaga gctactgcag ttattgcata      3060
     gtggaggatt tgacgcacat aagtggtgct caaataatma agctatccta gaaggaattc      3120
     caaggaacct ctggggtacc acatacgacg tggaagatgc agctgataat gcggtggtaa      3180
     aaactctagg agtagtgtgg aatgcttcgc aagattggtt ctcgttccgc attcaacctc      3240
     ctaacgaact gtcccagccg gtgactcgca agatagtact cagtgaaata gccaagtttt      3300
     tcgatccgct gggtctcggc ggaccggtgg tcacagcagc gaaactgatc ttcagagagg      3360
     tcgggcttct taatctggac tgggacgatc ccgttcctga caccattgct gaaaggtggc      3420
     gttcgttccg atcacaactg ccggcgttga atgaccttaa ggtgcccagg tggataatca      3480
     gcgaaggatc caaacttgtg gaactccacg ggtttgctga cgcatcagat caagcwtatg      3540
     gaacatgcct gtacacgcgt ctggtgcttc ccaatggtgc agtcaagatg catctcatct      3600
     gcagtaagtc gagaattctc ccgaagaaaa ctggaaagac gaagcctatc acaacgccta      3660
     gagccgagct cctagctgct ctgctccttt cccgagaaat gacgaaggta atcaactcgg      3720
     tcgacatcat tttcgatcgt gtgaccctgt ggagtgattc acaaatcgtg ctttgttgga      3780
     tcaaaaaatc accagccgmt ctacagttgt tcgtagcgaa cagagtgatc gagattcaga      3840
     agcttaccaa cgagtaccaa tggcgataca ttcccacgta cgacaatccg gccgatctaa      3900
     tatcgagagg ggagatgcca catctactga ttcaccgatc catttggtgg aatggcccag      3960
     ctgcgttgaa tcaagaagtt ttgcagatag agcagccwtc tcctcttcaa gataacgatc      4020
     ttcctgaaat tcgagcttgc ctcgcgcttg ttaaaccacc ggtaagattg gcggcatttg      4080
     accgaattgg tacgttcgct cgattgcagc ggtgtatgag cttcgtagtt mgatttgcgc      4140
     actatgtgct ctcaggacgg gagataatta cgaagggtgt gccaacagtg ttwgaactcg      4200
     atgaagcctt gaagctgatg gtgcgatgcg tgcaagagga agcattccaa ccggaattgc      4260
     gcgcattgaa ggagggcggt acacatcgcc tacgaagcct ccatccgttt atcgacccgg      4320
     tcgacggaat tttacgagtt ggtggacgtg tgaagaaggc gtttattccg tatgatagtc      4380
     gccatcaaat gttactgcca gcaaatcatc ccttgactga attactgatc cgtcacgaac      4440
     accagagcaa cctccatgca gggcaaaggg cattactcgc tatcgtacgc caacggttct      4500
     ggccactgaa ggctaagaat attattcgaa aggtaattcg gcagtgcgtt acgtgctttc      4560
     gakcaaatcc gatgaagacg acgcagctga tgggtgatct wccgtcttac cgagtccaac      4620
     catctcctgc tttcttccac accggcgtcg actatgcggg acctttttcg attaagtcac      4680
     tcacccaagc acgcaaaccg atgattacga agggatacat atgtctcttt gtttgcctta      4740
     gtacacgtgc catccatctc gagctggtgt cgagcctaac caccgatgcg tttctcgcca      4800
     cgctgagacg gttcatcgga cgacgaggac ctgttagcaa gatctattca gacaacgcaa      4860
     maaactttgt tggagctgaa gccgaactgg agcagctaag caatttgttt tccgcagaac      4920
     agcacatcaa ggcactggaa gagttttgtg gaagccaatc gatcacctgg agtttcatcc      4980
     caccgagaag tccacatttc ggtgggattt gggagtccgg agtgaagtct gtcaagcacc      5040
     acctgaaaag agtagttggg aatcagaagc taacgtttga ggaaatgagt acggtgctag      5100
     ttcaaatcga atcggtgctt aactcgcggc cactcactcc atgctctgat gatcccagcg      5160
     atttaaccgc ggtaactcct gctcattttc tcgttggacg acaaatgaag tgtattcctg      5220
     agccttcgta caccaatatg aaawtatcaa cgctgacgag gtggcaacta gtgcaagcca      5280
     ttcaacaaca cttttggaaa aggtggcttg ccgaatatct gccggagatg cagaaccgcc      5340
     agaagtggtt caaaacaact agaattcaac ctggagcctt ggtgttgatt aatgatccca      5400
     acgttccgcc gatgcaatgg caactcggcc gaatcgtcga gacacaccct ggcagcgaca      5460
     acatcaccag ggtcgtaact ctgcgcaccg ccaggggtga atgcaagcgg ggtgtgaccg      5520
     agatttccct tctaccgctt gactcggagc aatttggaga attgaaataa accatttcaa      5580
     tgcgggggag ga                                                          5592
//
ID   BEL-811_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 25.07, Created)
DT   03-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-811_AA-I;
KW   BEL-811_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-207
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2029-2029 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 207 BP; 53 A; 40 C; 35 G; 79 T; 0 other;
     tgtataaacc ttgatgaatt tactccaacc tatattcatt gactttgtta ctttttatat        60
     gttgcgctat gttgctgcac accttctgtg tgacatttcc ttgaataaaa aaagccatct       120
     ttgttacgac gttgaagcga atagacgcgt tttatttttc gcgagtccga aacgtttttt       180
     tatacagtcc gctgaatttg atgacca                                           207
//
ID   BEL-812_AA-I repbase;    DNA;    INV; 6128 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-812_;
KW   BEL-812_AA-I; BEL-812_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6128
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2163-2163 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..6127
FT                 /product="BEL-812_AA-I_1p"
FT                 /translation="MFRPNPNPEKSGXNCAACDRPDNEESQMVFCDHCQSW
FT                 YHFGCVXVTADIKDVSWCCEKCKGSGSDGSGSSELQEELKKLEKQKKKQKR
FT                 ELEKERILHQKRMEVQRELXEMREQLDKEKRETELEFERAQMEKKIAEEEA
FT                 HQRKLEEMRTEMEERLQRLKLKRIKESTDGEKXQEEVVNNVESGNSKKKTQ
FT                 KSMKPEKVKPGEELEKKKSRKTKPGEVEPVAESTRDSRGAYRKHSTPKVAR
FT                 KLSEKSARGPPSLPESFLIGRNGDSTPFGHPGVPKSVQKRRSETMRKIVEQ
FT                 ESEDATTYDEEEEESSEEDVRSCEDEGEISSEDEESSGEEESHVASEVESS
FT                 ETSEDEEKVENCRRKHGEAERSRKNRHRAPSKAQLSARQFLSRKLPTFSGK
FT                 LEEWPMFISSYETSTKACGFSDVENLARLQECLKGEALEAVRSRLLLPKSV
FT                 PKIIETLRMLYGRPERLLNMLLSKVRNAAPPKADRLASFIGFGVVVQQLAD
FT                 HLEATGLTTHLVNPMLIQELTEKLPAGTQLEWVRYRRKSKVVTLRTLSNFL
FT                 SSIVKDASEVVAYGEGSRSGEVGLRSGDYGPKKGKARSGARDGYVHAHDVV
FT                 EKRSSSPPARERKPCRICGRVDHRIRNCERFRRLQLTDRWDAVRKWKLCQL
FT                 CLNEHGSAGCKLSFRCNVEGCKERHNPLLHFTRPAAGLNCNIHAMQPKPTV
FT                 IFRMMPVTLHCGKFSVNTIAFLDEGSSYTLVEQALISRLGVRGVPQPLRVT
FT                 WTAGVSRLEKDSQCVSLFISARGSAQRFHIKNAHTVESLKLPHHTQAVSEV
FT                 VKQYAHLRGIPIADFHQAAPQILIGLKDIHLYAPLESRIGRPEEPIAVRSK
FT                 LGWTVYGPTGVGSVEGGIVGHHTCKAVTNQDLHDLLKSHYTLEESGISVAL
FT                 LPESEEDRRAKELLKKTTKRIGDRFETGLLWKEDDAEFPDSYPMAIKRLSC
FT                 LENRLRKDTELYAKVRTMVADYLVKGYAHEATSSELMAFDCNKVWYVPLNI
FT                 VFNPRKKKFRLVWDARAEVKGVSLNSKLLKGPDMLTALPAVICKFREREVG
FT                 FGADIKEMYHQLRIREEDKRAQRFLFRNDPSEKPTVYVMDVATFGSTSSPC
FT                 SAQYVKNQNAKEFAGQFPAAAVAIVENHYVDDYFDSADTVEEAVERAKEVR
FT                 YVHSKGGFELRNWVSSSEKFLVALGERKEDQCVRFSEDKESGSERVLGIVW
FT                 NPSSDEFSFSTKLREDLEPFLSGAKLPTKRIVMSCVMSFFDPLGLLSTFTF
FT                 YGKLLIQDLWRSGCSWDQPINDECAEKWNRWIRRLPEVEMVRIPRYYFRGG
FT                 RCLDYNNLQLHVFVDASEDAYGAAAYIRIETADRPLCSLVMSRSKVAPLKH
FT                 LSIPRLELQAAVLGARLANSVREILSLEVKQQFMWSDSRTVLSWIHSDHRR
FT                 YKQFVAFRIGEIHSLTRLSEWRWVPTKFNVADALTKWDKAHSLRSDGPWFR
FT                 APEFLYQPEDCWPKQESVTPNTSEEIRACLQFHDVSVTETIIDPLRFSKWK
FT                 VLVRTVACVYRFVSNCRRKRDGMEIEAVPASTSIRKVVKKNVRSITASLKR
FT                 EEYQRAEAYLWRSAQADCFGDEIRTIMKNQQQPCRQQYQVEKSSSLYTLSP
FT                 FLDADGVLRMEGRVAQGLSLPFELRFPIILPKKHPVTDKLLEFYHQQVAHG
FT                 NTETAVNEIRQRFYIQNLRAEVKRIGKACVWCKVQKCRPRNPRMAPLPESR
FT                 VTPNLPPFSHTGVDYCGPVTVTVGRRSEKRYICLFTCMTTRAVHLEIAHSL
FT                 TTQACLMAIRRFVCRRGKPLEFYSDNGTNFQAASKAIVQQIGIKCEDEFTD
FT                 SRTRWNFNPPSAPHMGGVWERLVRSVKAALTVLNDGRSLTDEVLLTTIAEA
FT                 EDLINSRPLTYVGLEPGADEALTPNHFVRGVGTMNTEHSVPPSSEAEALRD
FT                 RYKRSQRLADRLWARWISEYLPSINQRAKWHSESPPLTCGDLVYIADEAVR
FT                 KSWIRGIVTEVYPGADGRIRQAIVKTAKGKFRRPVTKLAVLEVQESKSGAA
FT                 EEPSPELRGGG"
XX
SQ   Sequence 6128 BP; 1609 A; 1396 C; 1901 G; 1218 T; 4 other;
     ttcttgaaaa ttaataatgt tccgaccaaa tcccaatcct gaaaaatcag gttwtaattg        60
     cgcggcttgt gaccgtcctg ataatgagga gtcacaaatg gtattttgcg accattgtca       120
     aagttggtac catttcggct gtgttkgcgt cacagctgat atcaaggacg tttcgtggtg       180
     ctgtgaaaag tgcaaaggaa gtggaagtga tggctccggt tcgtctgagc tgcaagagga       240
     gttgaagaag ctcgaaaagc agaagaagaa gcagaagcgg gaactggaga aggagaggat       300
     tttgcaccag aagcgaatgg aggtacagcg agagctgaam gaaatgcgcg aacagctcga       360
     taaggagaaa cgggagactg aattggagtt cgaaagggcg cagatggaga agaagatcgc       420
     cgaagaagaa gcccaccaaa ggaaactgga agagatgcgg acagagatgg aagagaggct       480
     gcagcgattg aagctgaagc ggattaaaga gtcgacggat ggagaaaaga ascaagagga       540
     agtggtgaac aatgttgaat cgggaaactc gaagaagaaa acgcaaaagt cgatgaagcc       600
     ggagaaagtg aagccaggag aagagctcga gaagaaaaag tcgaggaaaa cgaagcctgg       660
     agaagtggaa ccggttgctg agagtacgcg tgattctaga ggagcctatc gtaagcattc       720
     gacgccgaaa gttgctcgaa agctctccga gaagtcggct aggggtccac cgagtctgcc       780
     ggaaagtttc ttgatcgggc ggaatggaga ttcgacgccg ttcgggcacc caggggttcc       840
     caagtcggtc cagaaaaggc gcagtgagac gatgcggaaa atagtagagc aagagtcgga       900
     agatgcaaca acttacgatg aagaagagga agagtcgtcc gaggaagatg taagaagctg       960
     cgaggacgaa ggagaaatct ccagcgagga cgaagagagc tccggggagg aggaaagtca      1020
     cgtcgcaagt gaagtggaaa gttcggagac gtccgaagat gaagagaagg tggagaattg      1080
     tcgtcggaag catggagaag ccgaacgaag tcgaaaaaat cggcatcgag cgccgtcgaa      1140
     ggcgcagtta tcagctcggc agttcctgtc cagaaagttg ccaacgtttt ctggcaaact      1200
     ggaggaatgg ccgatgttta tcagcagcta tgagacgtcg acgaaggcgt gcggcttttc      1260
     cgacgtggaa aacctggcgc ggctgcaaga atgcttgaaa ggcgaggcgc tggaggcagt      1320
     taggagcaga ttgcttctac ctaaatcggt tccgaagatc attgagacgc tacggatgtt      1380
     gtatgggcgg cctgagcgac ttctcaacat gttgctgtcg aaggttcgca atgcagcacc      1440
     accgaaagcg gatcgtttgg cgagtttcat cggattcggg gtggtagtcc aacagctagc      1500
     cgatcatctt gaggctactg gattgaccac tcatctggtg aacccgatgc tcatacaaga      1560
     gctaacagag aagctgccag caggaacgca gcttgaatgg gtgcgatatc gcaggaagag      1620
     caaagtggtg acgctgcgca cgttgtcaaa cttcctgtcg agcatcgtaa aagacgcaag      1680
     cgaggtagta gcgtatggag aagggtcccg atccggagaa gttggacttc gatccggaga      1740
     ttacgggccg aagaaaggga aagcgagaag cggagcgcgt gatggctatg tgcacgctca      1800
     cgatgtggtg gaaaagagaa gttcaagtcc acccgctaga gagaggaagc cttgcaggat      1860
     ttgcggcaga gtggatcatc gaatccggaa ttgcgaacgt ttccggagac ttcagctcac      1920
     cgatagatgg gatgcagtgc gcaagtggaa gttgtgtcag ctgtgtctga acgagcacgg      1980
     atcggccggc tgtaaactca gtttccgctg caatgtcgaa ggatgtaagg agcgccacaa      2040
     tcctttgctt catttcacca ggccagccgc cggattgaac tgcaacatcc acgcaatgca      2100
     accgaagcct accgtcattt tccgcatgat gccagtcacg ttgcactgtg gaaagttttc      2160
     agtgaatacg attgcgttcc tggatgaagg gtcatcgtac acgctagtgg aacaagcgct      2220
     gatcagccga ttaggagtac gtggcgtgcc gcagccactc cgagtgacat ggaccgccgg      2280
     agtttcccgg ctcgagaagg attcgcagtg tgtgagtctt ttcatctctg ctagaggatc      2340
     cgcgcagcgg ttccatataa agaacgccca cacggtggaa agcctgaagc ttccgcacca      2400
     cacacaggcc gtgtcggaag tggtgaaaca gtacgctcac cttcgaggaa taccgattgc      2460
     agattttcat caagccgcac cgcagattct catcggattg aaagatatcc atctgtacgc      2520
     gccgctcgaa tcgcgtattg gccgaccgga ggagccgata gcagttaggt cgaagcttgg      2580
     ttggaccgtc tacggaccaa ctggcgttgg tagtgtggaa ggaggaatag tcggccacca      2640
     tacttgcaag gcagtgacga atcaggacct ccacgacctg ctcaaaagcc actacactct      2700
     ggaggagtcc ggcatttccg tggcattgct ccctgagtcg gaagaggacc gaagagcgaa      2760
     ggagttattg aagaagacga caaagagaat cggcgaccgg ttcgaaacag gcttgctgtg      2820
     gaaagaagac gatgctgagt ttcccgacag ctacccgatg gcaatcaagc ggctttcgtg      2880
     cctggaaaat cgtctgagga aggacaccga gctttacgcc aaagttcgca ccatggtagc      2940
     cgactatctg gtgaaagggt acgcacacga agcgacatcg tcggagctga tggctttcga      3000
     ctgcaataag gtgtggtacg tgccgctgaa cattgtattc aacccgagga agaagaagtt      3060
     tcgtctggtg tgggacgcca gagcagaagt taaaggagtt tcactgaact cgaaactact      3120
     aaagggtccg gacatgctga ctgccctgcc ggcggttata tgcaagtttc gggagcgaga      3180
     agtcggattc ggtgctgaca taaaggagat gtaccatcag ctgcgaatcc gagaagaaga      3240
     taagcgagcg cagaggttcc tgttccggaa cgatccatca gagaagccga cggtgtacgt      3300
     gatggacgtg gcgacgtttg gttctacgag ttcgccgtgc tccgcgcaat acgtaaagaa      3360
     ccagaatgcg aaggagtttg ctggacagtt tcctgcagcg gcggtggcta tcgtcgaaaa      3420
     ccattacgtc gacgattatt tcgacagtgc ggacacggtc gaagaagcag ttgagcgggc      3480
     gaaagaggtg cgatacgtcc actccaaggg cggatttgag ctgcgcaact gggtctctag      3540
     ctccgagaag ttcctggtgg ccctcggaga acgaaaggaa gatcagtgcg taaggttcag      3600
     cgaggataag gagtctggtt ctgaacgagt attgggaatc gtctggaacc cgtccagcga      3660
     tgagttttcg ttttcgacca agcttagaga agatttggag ccgttcctgt ccggcgcgaa      3720
     gttgccgacg aagagaatag tgatgagctg cgtgatgagt ttcttcgacc cactaggact      3780
     gttgtctaca ttcactttct acgggaagct gctaatccaa gacttgtggc gtagcggttg      3840
     cagctgggac cagccaatca acgacgagtg tgcagagaag tggaaccgct ggatccggag      3900
     actaccggag gtcgaaatgg ttcggattcc ccgctattac ttccgtggcg gacgctgtct      3960
     agattacaac aacttgcagc tgcacgtttt tgtggacgca agtgaggacg catatggcgc      4020
     agccgcgtat atccgcatcg agacggctga tcgaccgttg tgttcgctcg tgatgtcgag      4080
     atcgaaggtt gcaccactaa agcacctctc gattcctcgt ttagagctgc aggcggcagt      4140
     attgggagcg agactagcga actccgtaag ggagatcctt tcgctagaag taaagcagca      4200
     gtttatgtgg tctgattcga ggacagtact gtcgtggatc cactccgacc accgccggta      4260
     caaacagttc gtggcgttcc ggattggcga aatccatagc ctgacgaggc tctccgagtg      4320
     gcgttgggtg ccgacgaagt tcaacgtggc cgacgcgttg acgaagtggg ataaagcgca      4380
     tagcctgcgc tccgatgggc catggttccg tgccccagag ttcctctacc agccggagga      4440
     ctgttggcca aagcaggaga gcgtaacacc gaatacttcc gaggaaatcc gagcgtgcct      4500
     gcaattccac gatgtttcgg tgaccgagac tataatagac ccgctgcggt tttcgaagtg      4560
     gaaggtgctg gttaggacag tagcgtgcgt ctacaggttc gtttcaaact gcagaagaaa      4620
     gcgagatggg atggagatcg aggccgttcc ggcgtcaaca agcataagga aggtagtgaa      4680
     gaagaacgtg cggtccatca ccgcgtcatt gaagcgtgaa gagtaccaga gagcggaggc      4740
     gtacctttgg aggtcggctc aagccgattg tttcggagat gagatccgga cgataatgaa      4800
     gaaccagcag caaccgtgcc ggcagcaata ccaagtggag aagtccagca gcctctacac      4860
     cttaagtccc ttcctggatg ccgatggtgt actgcgtatg gaaggaagag tggcacaagg      4920
     gttgtcactg ccgtttgagt tgcggttccc gatcattttg ccgaagaagc acccggtgac      4980
     agataagctg cttgagttct atcatcagca agtagcacac gggaatacag aaactgccgt      5040
     caacgagatt cggcagcgct tctacatcca gaacttacga gcggaagtga agcgaattgg      5100
     gaaagcctgc gtctggtgta aggtgcaaaa gtgtcggcca aggaatccga gaatggctcc      5160
     actgccggag tcacgcgtca cgccgaatct accaccattc agtcataccg gcgtggacta      5220
     ctgcgggccg gtaaccgtta cggtcggtcg caggtcggag aagcggtaca tttgcctctt      5280
     cacgtgtatg acgacgagag ctgttcacct ggagatcgct cacagcctga cgactcaagc      5340
     gtgtttaatg gccattcgac ggttcgtgtg tcgccgaggg aagccgttag agttctactc      5400
     ggacaatggc acgaactttc aggcagcgag caaggcgatc gtccagcaga tcggtatcaa      5460
     atgcgaggat gaattcaccg attcacgaac taggtggaat ttcaacccac ctagcgcacc      5520
     tcacatgggt ggggtttggg agcgattggt tcgctccgtg aaggcagcgc taaccgtgtt      5580
     gaacgatggg cggtccttga ccgacgaagt gcttttgacg acgatagcgg aggcagaaga      5640
     cctcatcaat tcccggccac taacgtacgt tggcctggaa ccaggagcgg acgaagcgtt      5700
     gacgccgaac cactttgttc gcggcgtcgg tacgatgaac acggaacatt ccgttccacc      5760
     gtctagcgag gcggaagcat tgcgggaccg gtacaagcgg tcacagcgat tggcagatag      5820
     attgtgggct cggtggatat ccgagtatct gccgtcgatc aaccagcgag cgaaatggca      5880
     ctccgagtcg ccgccattaa cctgtggcga cctggtatac atcgctgacg aagccgtgcg      5940
     gaagagctgg atccgtggca tcgtgactga ggtctacccg ggagcggacg gccgaatccg      6000
     gcaggcgata gtcaagaccg caaagggtaa gtttaggagg ccggtgacga agctagctgt      6060
     gctcgaggtg caggagagta aatccggcgc agctgaggaa ccttcaccag aattacgggg      6120
     agggggta                                                               6128
//
ID   BEL-812_AA-LTR repbase;    DNA;    INV; 605 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-812_AA-I;
KW   BEL-812_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-605
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-605
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2030-2030 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 605 BP; 217 A; 98 C; 127 G; 163 T; 0 other;
     tgttggcaca gctccgtacc accccacggt aggtcaacgt acgttccatg aagaggcacg        60
     acaaccgcac atccactcac cctgagcgca acataggcag catagctgtc agtgagtatg       120
     tagcgagtaa gagagaggta aataaaaaca aaataatatg cggcagaaga aggcataaac       180
     aaaatggtta aaactctaga gtagattaaa tttgctgaaa gtccgtgagt ggaaatattt       240
     agaacgaaat ttatgattat ttacggtgtt agaaaaacta agaatcctga tttctttatt       300
     agcatacgca gtaagtaaaa agaacattca ttagcattta gaatacatag ttgaaaccat       360
     ttttctcgat atcgtagaga gccagaaatc gcgccacagc aatcaacctg tatagagaaa       420
     ggaggaaaaa ctattaatgt aagtagttaa ataagtgaaa tagccgtgaa agaatatgaa       480
     ttgactttgt tgtttgtttt gtttacttgg ttaataaatg tagtttcaag ctgttgctaa       540
     atattgaact ccaaaagcac tgctctgaga atttggtttg aattagggtg gtccaattcc       600
     gaaca                                                                   605
//
ID   BEL-813_AA-I repbase;    DNA;    INV; 6410 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-813_;
KW   BEL-813_AA-I; BEL-813_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6410
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6410
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2164-2164 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..6388
FT                 /product="BEL-813_AA-I_1p"
FT                 /translation="MATPVSNEAQCIACNRPNTAEPKMVQCDGCGRWYHFS
FT                 CAGVGDSIEAEDRSYQCALCRPPYRAPSSVGSSSTTASAREARIRLEMQQL
FT                 EEEKQLKQKMLELEKEFLDRKFKLLQAKLDEDTRSSRASRASDKRSTTSND
FT                 KVLHWIDNHQVNLIAKPGNILSTGITSQVGGTVASTDPTSVIATAQNSSKL
FT                 PSTSAVISQQAVYNSEAVSSAADSRPFEISPINTVQANRLSQPFDDVISPI
FT                 ATVQSGMPGGVPRNVAPLPPSFQSTPLEKAISVNAPGGKLVATGQSNIDHR
FT                 IPSLINQRASAVAFSSPSSWMPGSVPYTGCGPSRYIPEEHRDGQYNQCSTM
FT                 VSTANVEINARGAIEQINQNYVQPAQMFSHTVQQLGQQLGRSHLVRGESNS
FT                 YPRGYIANHNPTPGFMNPTMPLVSQNEVFAPPEIQTIPNVPQLGGNFQQQS
FT                 LGPPLVSVSSYQTPISSVPNSQMLHAGLQLNTGPNAQQLAARHVVPKELPS
FT                 FGGNPVEWPIFWSSYATSTELCGFSDSENLMRLQRSLKGDARKAVCSLLLH
FT                 PSNVPSIVKTLKVLYGRPEAIISTLLAEVRAAPAPRPEKLGTIINFGLAVR
FT                 NLCAHLVATDQQVHLANPILMEELVEKLPANIKLDWALYKQRVASVDLKIF
FT                 SDYLDVIVTAASSVTPVADKAEKAKGKAVVNSHLSEVHTAKVREERPFKTT
FT                 EGYNHPKVQRPCMVCKAVGHKPKDCSAFKSKSLLEKWKVVQDEHLCRRCLF
FT                 PHGKWPCKASTCGVEGCEQRHHRLLHPGEPQAEHTKSSVPVSGVISVHQHH
FT                 HRVLFRILPVVLHANGRSLKTFAFLDGGSDSTLMDRSLAEQLGVQGPSSPL
FT                 CMQWTNGVKRVEEESQQVELNISGSSTGKQFTLRNVQTVGGLELPQQSIDF
FT                 EELRSKYLYLNGLPIESYRDAMPGILIGLDNTRLKTTLKLREGREYEPVAA
FT                 KTRLGWLLYGHSGHKSSSSSQHILHIGTRTRDDELHELVKSFFSIESVGVS
FT                 VSQVKESSEDQRAMEILQATTTRTATGRFETGLLWKFDNIEFPNSRPMAER
FT                 RLKCLENRLLKSSKLHDTVRQQITEYVSKGYAHKATVNELNEMESQRTWFL
FT                 PLGIVVNPKKPDKVRVVWDAAASVQGVSLNSVLLKGPDLLTPLQTVLSRYR
FT                 QREIAISGDIMEMFHQVLITRPDRSAQMFLWRDQPSDAIQVYVMDVAIFGA
FT                 TCSPSSTQFVKNLNAEEYATEFPNAAVAIKENHYVDDFLDSVDTVDEAVQL
FT                 ALDVKKVHEKAGFLIRHWMSSSSEVLQRIGEQNTMAVKSFTMDKGSHMERV
FT                 LGMVWRPQEDVFVFTLTLRDDLQCLVDRHAVPTKRQLLSLVMSVFDPLGLV
FT                 APFVVHGKSLVQDVWRSGIGWDEQIPIDLVPRWEQYTTLLGTLDKVRIPRC
FT                 YFPGYSQESYNSTELHVFVDASSAAYAAVAYFRIEDRGVVRCSLVSAKTKV
FT                 APMKLLSIPRLELQAAVIGMRLMKTIMSNHTLPITRKVLWSDSATVLNWIR
FT                 SDPRKFRQFVAFRVTEILEETEVGDWRKVPSKMNVADEATKWGRGPCFEEE
FT                 SRWYKAPEFLYGPECEWPEESIGQVTAEELKIVSVHRLPSTTTIIDFSRFS
FT                 KWEKLIGTMAFVLRFVSKQKQCRGAVPSSEEKKQAESAVIKLVQMSRYPEE
FT                 IRILRQNQQKQPEEQEAVSKCSPLYTLSPFLDSSKVMRMGSRIKLAECVPY
FT                 ETKFPAILPKEHYVTRLVIDSFHRKYGHANNETVVNEVRQQFHVSELRTAV
FT                 KKVANSCGWCKIYKSKPQVPPMGPLPAARVTPYVRAFTFTGLDYFGPITVR
FT                 YGRGSTKRWVALFTCLGTRAVHLEIAHTLSTESCKMAIRRFISRRGAPQEI
FT                 YSDQGTNFQGASAELKQQIGAINLDMAETFTNTETQWKMNPPYAPHMGGVW
FT                 ERLVRSVKSGLANMPLTRNPDEETLQTAIVEVESIVNSRPLTYLPIDSQES
FT                 EALTPNHFLLLSSSGAVQPAVRPTDEGAALRTNWKHIQVMLDRFWNRWLRE
FT                 YLPVIARQPKWFKKVTPINVGDLVIVVNEGTRNSWTRGRIIQVYPGRDGQV
FT                 RRADIQTAAGVMRRPATKIAVLDVAREKVQLEET"
XX
SQ   Sequence 6410 BP; 1790 A; 1505 C; 1663 G; 1452 T; 0 other;
     aactttaaga tttagtgact taatcatctc gacctcagct cgcatacatc ggaggatggc        60
     cacaccagtg tcaaacgagg cccaatgcat tgcatgcaac cggcctaaca cagcagagcc       120
     taagatggta cagtgcgacg gatgcggccg atggtatcat ttttcatgcg ccggcgtcgg       180
     cgatagtata gaagctgaag atcgaagcta ccaatgcgcg ctttgccgtc caccataccg       240
     agcaccttca tcggttggat cttcatcaac gactgctagt gcgcgagagg cgaggattcg       300
     cttggaaatg cagcagttgg aggaggaaaa acagctgaag caaaaaatgc tggagttgga       360
     gaaggaattt ctggatcgga agttcaaact gcttcaagct aaactggacg aggataccag       420
     gagctcgaga gcaagtcgag cgagtgacaa acggtcgacc acaagcaacg ataaggtcct       480
     gcactggata gacaaccacc aggtgaacct gattgccaaa cctggaaaca ttctttccac       540
     tggaatcaca tcacaggttg gtggtacggt cgcttcaacg gatccaacat cggtcatcgc       600
     caccgcgcaa aatagctcca aactaccttc gacatcagcg gtcatcagtc aacaagcggt       660
     ttacaactca gaagcagtta gctcagctgc tgattccagg cccttcgaaa tttctcctat       720
     aaacaccgtt caggccaacc ggctttcaca acctttcgat gacgtcatat ctcctatagc       780
     gaccgttcag tcaggaatgc ctggtggtgt tccacgcaac gtagcaccgc tcccaccatc       840
     gtttcaatca acgcctctcg agaaagctat ctctgtgaat gccccaggtg ggaagttagt       900
     ggcgacaggg caatcgaaca tcgatcatcg aattccgtcc ttgatcaatc aacgagcttc       960
     ggcagtagca ttttcatctc caagcagttg gatgcctgga tcggtcccct acaccggatg      1020
     tggtccatca aggtatattc cggaagaaca tagggatggt cagtataacc aatgttcaac      1080
     tatggtgagt actgccaatg tggaaattaa tgcgagagga gctatagaac agatcaatca      1140
     aaattatgtt caaccagcac aaatgttttc acacacagtg cagcagctag ggcaacagtt      1200
     aggaaggtcg catctagtta gaggcgaatc aaactcgtat cctaggggat atatagccaa      1260
     tcacaatccc actcctggtt ttatgaatcc tacaatgccc ctcgtttcac aaaacgaagt      1320
     ctttgctccc cctgaaatac aaacaattcc aaacgttcca caattggggg gaaatttcca      1380
     acaacagtct ctgggtccac ccttggtaag tgtttcgagt taccaaacgc caatatcttc      1440
     tgtaccaaat tcgcaaatgt tgcatgcggg tttgcagtta aacactggcc caaatgctca      1500
     acagttggct gcacgccacg ttgttcccaa ggagttacct tccttcggtg gtaaccctgt      1560
     ggagtggccg attttttgga gtagctacgc gacgtctaca gaactatgcg ggttcagcga      1620
     ctctgagaac ctgatgcggc tccagcgtag cttgaaaggg gatgcgagga aagcggtttg      1680
     tagcctactt ctgcatccgt cgaacgtgcc gagcatcgtt aaaacgttga aggttctgta      1740
     tggtcgacca gaagcaatta tcagcactct gttggcagag gttcgtgcag ctccagctcc      1800
     ccggccggaa aaattgggca caataatcaa tttcggctta gctgtccgaa acctttgtgc      1860
     tcatcttgtt gccaccgatc agcaagtaca tctggcgaat ccgatcctga tggaggaact      1920
     ggttgaaaaa ctcccagcca acatcaaatt ggactgggca ttgtacaagc aacgggtcgc      1980
     aagtgtggac ctgaaaatct tttctgacta cctcgacgtc atcgttacgg cggccagcag      2040
     tgtcacaccg gtggcagaca aagctgagaa ggcgaaaggg aaagcggtag tgaactctca      2100
     cttgtccgag gtacatactg cgaaagttcg ggaagaacga ccttttaaga cgacagaagg      2160
     gtacaatcat cccaaagttc aacgcccctg catggtatgc aaagctgttg gacataagcc      2220
     gaaggactgc agcgcgttca aatcgaagtc cctgttagaa aagtggaagg tggtgcaaga      2280
     tgaacatctt tgtcggcgtt gcttgtttcc gcatggaaag tggccctgta aagcgtcaac      2340
     ctgcggtgtc gaaggctgtg aacaacggca tcaccgattg ctacacccag gtgaaccaca      2400
     agccgaacac acaaaaagtt cggttccggt ttcgggcgtg atttcggtac atcaacacca      2460
     tcatcgtgtg ctattccgga tcttaccagt ggttcttcac gctaatggac gctctctcaa      2520
     aaccttcgcc tttctggacg gtggctccga ttcgacgttg atggatagat ctttagcaga      2580
     gcagttaggc gtccaaggtc cgtcatctcc tctgtgcatg cagtggacca acggtgtcaa      2640
     gcgcgtggaa gaggaatccc agcaagttga gctgaatata tcgggttcgt ccacaggaaa      2700
     gcaattcacg ttgcggaatg tgcaaacagt cggtgggctg gaactgcccc aacaatcgat      2760
     cgattttgaa gagctgaggt caaaatatct atacctaaat ggcctaccga tcgaaagcta      2820
     cagggatgcc atgccaggca tattgattgg cttggataat acgagattga agactacgtt      2880
     gaagttgcga gaaggtaggg agtatgaacc tgtggcagcc aaaaccaggc ttggctggct      2940
     gctatatgga cattcaggac ataagtcaag ctcgtcgtcg cagcacattc tacacatcgg      3000
     tactcgaact agagacgatg aactgcacga actagtgaag agttttttct ccattgaaag      3060
     tgtgggagta tccgttagcc aagtgaagga atcgtctgaa gatcaaaggg cgatggagat      3120
     tcttcaagca actacaacca gaaccgcaac tggaagattt gagaccggac tgttatggaa      3180
     gtttgataac atcgagtttc ccaacagcag gcccatggcc gagcggagat tgaagtgttt      3240
     ggaaaatcgt ctcctgaagt catccaaact ccacgatacc gtcaggcagc aaataacgga      3300
     gtacgtatcc aaagggtacg cccataaggc aactgtaaac gaactgaatg agatggaatc      3360
     gcaacgaacg tggtttcttc cgctcggtat tgtggtgaac cccaagaaac ccgataaagt      3420
     gagagttgtt tgggatgcag ctgcgtcggt gcaaggagtg tcgttaaact ccgttcttct      3480
     gaagggaccg gatctgttga cgccacttca aacagttttg agccgatacc gacagaggga      3540
     gatcgccatc agtggagata taatggaaat gttccatcag gtccttataa ctcgcccgga      3600
     tcgttcagct caaatgttcc tatggagaga tcagccctcg gacgcaatac aggtgtacgt      3660
     aatggacgtt gctatattcg gggcaacctg ctcaccgagt tcaacacagt tcgtaaagaa      3720
     cctcaacgcg gaggagtacg ccaccgagtt cccaaatgcc gccgttgcca tcaaagagaa      3780
     ccattatgtt gacgactttc tcgacagcgt cgatactgtt gatgaagctg ttcaactggc      3840
     actagatgtc aaaaaggtgc acgaaaaggc gggatttctg atccggcact ggatgtctag      3900
     ttcttcagag gtcctacagc gaattggaga acagaataca atggcagtaa aaagtttcac      3960
     catggacaaa ggcagccata tggaacgcgt cctgggaatg gtttggcgac cgcaagaaga      4020
     tgtctttgtg ttcacgctga cgctacgcga tgacttacaa tgcctagttg ataggcatgc      4080
     cgttccaact aaacgccaac ttctgagcct agtgatgagc gtattcgatc cgctggggtt      4140
     agtcgctcca tttgtagtgc atggaaaatc gttagtccaa gatgtgtgga gatcggggat      4200
     tggttgggat gaacaaattc cgatcgattt agttccaagg tgggaacagt ataccactct      4260
     tctgggaaca ttggataaag tgagaatacc cagatgctac ttcccgggat acagccaaga      4320
     atcctacaat tcgacagagc tacatgtgtt cgtggatgca agcagtgcgg cgtacgccgc      4380
     tgtagcctac ttccgaatcg aagatcgagg agtagtgcgc tgcagccttg tctccgcaaa      4440
     aacgaaggtg gcaccgatga agctgttatc catcccaaga ttagagctcc aggcggctgt      4500
     tattggaatg cgtttaatga agaccataat gtccaatcac acgttgccta tcacgcgcaa      4560
     agtcttgtgg agtgactcgg caacggtact caactggata cggtctgatc ctcgaaagtt      4620
     ccggcagttc gttgcgttcc gggtcactga gatcctggaa gaaactgagg ttggagactg      4680
     gagaaaagtg ccgtcaaaaa tgaacgtagc tgacgaggcc actaagtggg gccgtggtcc      4740
     ttgtttcgag gaagaaagca gatggtacaa agcaccggaa tttctgtatg gcccagagtg      4800
     cgaatggccg gaagagtcga ttggacaagt cacagcagaa gagttgaaga tcgttagcgt      4860
     gcatcggctc ccatcaacga ctacaatcat agatttttca cgcttttcaa agtgggagaa      4920
     gttaattgga acgatggcgt ttgttctgcg gttcgtcagc aaacagaagc aatgcagagg      4980
     agcagttcca agcagtgagg aaaagaagca agcagagtcg gctgtaataa agctggttca      5040
     gatgagccgg tatccagaag aaatacgaat tctccgtcaa aatcaacaga agcagccaga      5100
     agaacaggaa gcagtaagca agtgcagtcc attgtacaca ctatcaccgt tcttagattc      5160
     cagcaaagtc atgagaatgg gatcacgcat caaattagcc gaatgcgtac cttacgaaac      5220
     caagttccct gcgattctac caaaggaaca ctatgttaca cggctggtta tagactcgtt      5280
     ccaccggaag tacgggcacg caaataatga aaccgtggta aatgaagttc gacagcaatt      5340
     ccatgtttct gaattacgaa cagcggttaa gaaggtcgca aatagctgcg gttggtgtaa      5400
     aatttacaag tcaaaacctc aagtacctcc tatgggacca ttaccagcgg ctcgtgttac      5460
     accatacgtg agagctttca cgttcactgg tctggactat tttgggccga tcacggtgcg      5520
     atacgggcgt ggtagcacta aaagatgggt tgctctcttc acctgcctag gtacacgagc      5580
     ggtccatcta gaaatcgcac atacgctttc cacggaatcc tgcaagatgg cgatacgcag      5640
     gttcatctct cgtcgaggtg ctccgcagga gatctactca gatcaaggga cgaacttcca      5700
     gggagctagt gccgaattga agcagcagat tggggctatt aacttggaca tggcggaaac      5760
     tttcacgaat acggaaaccc aatggaagat gaacccaccg tatgcccccc atatgggagg      5820
     agtatgggag aggctggtgc gatcggtcaa gtctggttta gcaaacatgc cattaacgag      5880
     gaatccagat gaagaaaccc tgcagacggc catagtggag gtagaatcaa ttgtcaactc      5940
     gcgtcctttg acctacttgc caattgacag tcaggaaagc gaggccctga caccaaacca      6000
     ctttcttttg ttaagttcga gtggcgcggt tcaaccagca gttcgaccaa cggacgaagg      6060
     tgctgcattg cggaccaact ggaagcacat tcaagtcatg cttgaccgtt tctggaaccg      6120
     ttggctgcgg gaatatttgc cagtcatcgc cagacagcca aagtggttca agaaggtcac      6180
     accgataaac gttggagatc tggtcatcgt ggtgaacgaa ggaactagaa atagttggac      6240
     tagaggaagg attattcagg tgtaccctgg acgagacgga caagttcgtc gtgcagatat      6300
     tcagacagca gcaggagtga tgcgtcgacc ggcaacgaag atagctgtcc tggatgttgc      6360
     cagagagaag gtacagcttg aggaaaccta aagccatacg tgcgggggcg                 6410
//
ID   BEL-813_AA-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-813_AA-I;
KW   BEL-813_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-510
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-510
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2031-2031 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 510 BP; 194 A; 100 C; 82 G; 132 T; 2 other;
     tgttggcaac ccttatcagc gagttcggta ccagccgttc agtaccaccc kcggcgaatg        60
     ctgataggac agcgactgtc aaactgccaa agcgacagag agaaatctca gaagcaaact       120
     aatatgtcat tattgattta tacaaaggtg caaagtcacg ataaaatctg aattcatttc       180
     catatttcct aaacttccaa aaatttgttt ctacttagcc taagtgattt aaataacatg       240
     taagtaatta attgtttcct agatgaattg gttatcctaa acaaacatta aattatagca       300
     cagaaacaga aactgaaata cacgattgtt acacttaaga cggacgatta tctcatgcag       360
     gaccactaaa tgtaaggtaa cctaaaattg taaaaacatg caaaaaaaaa cctaacgaat       420
     taaaactatt tcagcttaaa gctaactccg aaacaaagta agagtttgac taaaaagagk       480
     tccgaaaatt cgtccgctcc tgtggcaaca                                        510
//
ID   BEL-814_AA-I repbase;    DNA;    INV; 5876 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-814_;
KW   BEL-814_AA-I; BEL-814_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5876
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5876
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2165-2165 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..5874
FT                 /product="BEL-814_AA-I_1p"
FT                 /translation="MPVTRSPMRNSNLNHDEDCECIACDKPTTVDNMVQCD
FT                 ACNDWWHYKCAGVTDSINDKPWSCSKCVGIPSKASSISSISTRASRLADSM
FT                 NRLKEQQELEKQRMELKLQKQFLDEQQKLLDATIAEETRSQKSKVSRRTAM
FT                 SQVKDWLYSEEGAVGGSIEPPAASRVQRNSNTVDGENQELNGAANSLKNLQ
FT                 KKLDDCQQQPNPSNEQLLELQDQLDQCKQLLAELQVTTSTPVKATGALPKV
FT                 RTNAPEMQTSSGLEHYPRDPCIQRPPPGFAWAERRINTGERNVDKQQRIER
FT                 APLQSNIENQQIQPPPINIQCNLPMMNSGPTPQQLAARQSLARDLPAFTGN
FT                 PSEWPIFISNYNYTTTACGFTDGENMVRLQRCLKGHALDTVRSRLVLPQAV
FT                 PQVIETLRMRFGRPEMLINSLLKDVRSLPAPRGLEGLIDYGLAVQALCDHV
FT                 VAAGEQAHLSNPTLLQELVGKLPADQKLMWAGYRRGAAQVDLSTFSNYMAD
FT                 VVRDASSVVQYDQDVGKTIITGKLRTRGYVNSHMVNDEEPLDEPNEPKAYE
FT                 CLFCGMEGHRVRECNGFKNLSVNERWRRVRSLGLCQNCLFRHGKRSCRSAI
FT                 RCDVDGCSYRHHPLLHSSKQAVVTTPVEHAVNNVHRSSSSGFLFRIIPVTI
FT                 HGKNCSIDVFAFLDEGSQLTLIEDDLAEQLDLIGNPHPLCLHWTGNTSRRE
FT                 KNSRMVSFEISGKNHGALFKVAEARTVDYLNLPSQSFHLEEARKRFRHLQT
FT                 VPMQSYENAVPKLLIGIDNLRLAVPLKVKEGDGTGPVAVKTRLGWCVYGGQ
FT                 PDGPVETYSYHVCECNKNCELHETMKQFFEIEAVGEGTKTNVLSEEDQRAQ
FT                 YLLESTTKRIGHRFETGLLWREENIKLPQSYSMALRRLKCLERRMERDPVL
FT                 KENLHRQIKEYSEKGYAHPASEEELSKANPDKIWYLPVGAVTNAKKPGKIR
FT                 IIWDAAAKVDGVSLNTALLKGPDQLASLPGVLFRFRLYHVAISADIQEMFH
FT                 QVHIRESDKHSQRFLWRSDPSEKPTIHLMDVATFGSTCSPASAQYVKNLNA
FT                 REHSGQFPRAAQSIIKCHYVDDYLESFDSEEEAYQIANQTRLVHRNGGFTL
FT                 RGWRSNSERVLARLGEVKSFSCKNLSLVGNEQSERVLGMLWTPRTDELSYS
FT                 THMSEDVRKLIATNMRPSKRQILRCVMTLFDPLGMLAPFLIHGKVLIQYLW
FT                 RAGADWDEQVDDNAFELWKKWTKMIEFISTIRLPRCYFPEATSETYNYAEM
FT                 HVFVDASETAYSCVVYLRTLTREGNPQCALVAGKAKVAPVKPMSVPRLELQ
FT                 GCVLGTRLMKFALENHNTPVIRRCLWTDSTTALSWIRADPRNYRPFVAHRV
FT                 GEILDSSKASEWRWIPSKLNPADEATKWGSGPYFTEESKWFCGPDFLRQSE
FT                 DNWPQSRKQLPVTTEEMRPVVLYHAVIEPFINYERFSRWERLHRVMAYVIR
FT                 FVDNARTGNPRRTGPLLQEELLTAREAIHKQVQRETYPDEVLILSRNAVLP
FT                 SNQRKAIDSGSVLYQYVPTMDDRGVIRQNSRARKAKHLLADFRYPVLMPRE
FT                 HPVTSLLVDWYHRTYRHANHETVLNEMRQLYMVPRLRTLVRKISRNCQLCK
FT                 LRRALPQVPPMAPLPSVRLADHVRPFTYTGIDYFGPLLVKVGRSNVKRWIV
FT                 LFTCLTVRAVHLEVAYTLSAASCISCVRRFVSRRGSPIEFFTDNGTNFHGA
FT                 ERILREQISQDLAYTFTNASTKWTFIPPGAPHMGGAWERLVRSVKTAMESA
FT                 YSVGKLDDEGLYTMVVEAEHLVNSRPLTYLPIDSEESEALSPNHFLLGSSS
FT                 GVRQPPAPILSYPRIIRNTWDEIRRRLDIFWKRWLTEYLPVIRRQAKWFSE
FT                 VRAVTEGDLVLIADEEKRNGWTRGRVIKVVKDSEGRIRQAIVQTSNGQLRR
FT                 PVSKLALMDVEGEHRAVLAGSKMHPGE"
XX
SQ   Sequence 5876 BP; 1697 A; 1347 C; 1441 G; 1391 T; 0 other;
     aaatcttcaa aatatttcac gatgccagtg acgagaagtc caatgcggaa ttctaacctc        60
     aaccacgatg aggattgtga atgcatcgcc tgcgataaac ctactacagt ggataacatg       120
     gtccaatgtg atgcctgcaa cgattggtgg cactataaat gtgctggtgt caccgattcc       180
     attaacgata aaccgtggag ctgctccaag tgcgttggaa taccatcgaa agcctcgtca       240
     attagttcta tttcaacgcg cgcttcccga ttggctgatt ctatgaatcg cctgaaagaa       300
     caacaagaat tggagaagca gcgcatggaa ttgaaactgc agaaacaatt tcttgatgaa       360
     cagcagaagc tattggatgc caccatcgcc gaagaaacaa gaagccaaaa gagtaaagta       420
     agtcgtcgta cggcaatgtc acaggtaaaa gattggttgt actcagaaga aggcgcagtg       480
     ggaggaagta ttgagccacc agcagcctct cgggttcaac gcaattcaaa tacggtcgat       540
     ggagaaaacc aagagctgaa tggtgcagca aattcgttga agaacttaca aaagaagtta       600
     gacgactgtc aacaacaacc aaatccatca aatgaacaac tcttggagtt acaggaccag       660
     ttggatcagt gtaagcagtt gctcgccgaa cttcaagtta caactagtac tccagtaaag       720
     gcaacgggag cgttgcctaa ggttcgtacg aacgctccgg agatgcagac aagcagcggt       780
     ttggaacatt acccgagaga tccttgcatt cagagacccc cacctggttt tgcctgggcc       840
     gaaagaagaa tcaatactgg tgaacgaaac gtcgacaagc agcagcgtat agaacgcgcg       900
     cccctacaat caaatatcga aaatcagcaa atccagcctc ctccgataaa tatacagtgc       960
     aatctaccaa tgatgaactc tggaccaact ccgcagcaac tcgcagccag acaatcctta      1020
     gcgcgagatc ttccggcctt tacagggaat ccatcggaat ggccaatttt tatatcgaat      1080
     tataattaca cgacgactgc ttgcggattc acagatgggg aaaacatggt tcgccttcaa      1140
     cgctgcctta aaggacacgc gctggacact gttcgtagtc gcttagtact gcctcaagcg      1200
     gtaccgcagg tgatagaaac ccttagaatg cggtttgggc ggccggaaat gctaattaat      1260
     tcgctgttga aggatgtacg atcgcttcca gctccaaggg gactcgaagg attgatcgac      1320
     tatggcttgg cagtccaagc gctgtgcgac catgttgtgg cggccggaga acaagctcat      1380
     ctttctaatc ccacactttt acaagagcta gtgggaaaac tgccggcaga tcaaaaactt      1440
     atgtgggctg gttacaggcg tggggctgca caagtggact tgagtacatt ctcaaactac      1500
     atggctgacg ttgtacgaga tgcatcgagc gtcgttcagt atgatcaaga tgttggaaaa      1560
     acaattatca ctggtaaatt gaggactaga ggatatgtga attcgcacat ggtgaacgat      1620
     gaggagccat tggatgagcc aaatgaaccg aaagcatacg aatgtttatt ctgtggcatg      1680
     gaaggccacc gtgtacgaga gtgcaatgga ttcaaaaatc tcagcgtaaa cgagcgttgg      1740
     cgaagagtgc gatcactagg actttgccag aactgcctgt ttaggcatgg aaaaaggtcg      1800
     tgtcgaagcg caatccgatg tgatgtagat ggctgttcat accgacacca tccccttctt      1860
     cattcgtcta aacaagctgt agttactacg ccggtagaac acgcagtaaa taatgttcat      1920
     cgctcatcta gctcgggatt cttgttcagg atcatcccgg tcacgatcca tggaaagaat      1980
     tgctccattg atgtcttcgc cttcttagac gaaggatctc agctaacgct aattgaggat      2040
     gaccttgcag aacagttgga cctgattggt aatccccatc ctctctgtct tcactggaca      2100
     gggaacactt cacgaagaga gaagaattcg agaatggtct catttgaaat ctctggaaag      2160
     aaccatggtg cacttttcaa ggtggcggaa gcacgaactg tagattatct aaacctgccc      2220
     agtcaaagtt tccacctgga ggaggcgagg aaacgtttta gacatttgca aacagttcca      2280
     atgcagagtt acgaaaacgc cgtcccaaaa ttgctgatcg ggatagacaa tttgcgcttg      2340
     gcagttccac tgaaggttaa ggaaggagat ggaaccggtc ctgtagcggt taaaaccaga      2400
     ctcggctggt gtgtgtatgg tgggcagcct gatggtcctg ttgaaacgta cagttaccat      2460
     gtgtgtgaat gtaacaaaaa ctgtgagcta cacgaaacga tgaaacagtt ctttgagatt      2520
     gaagcagtag gcgaaggtac gaagaccaac gtactatctg aagaagacca acgcgcccaa      2580
     taccttctag agagtacgac caaacgcatc ggacaccgat ttgaaaccgg attactgtgg      2640
     agggaagaaa atatcaagct tccacaaagc tattcgatgg cactacgcag attaaaatgc      2700
     ctagaacggc gcatggagcg cgatcccgtt ctaaaagaaa atcttcatcg acaaattaag      2760
     gaatacagtg agaagggata cgcacatcca gcttcagagg aagaactctc caaagcgaat      2820
     ccggataaaa tctggtacct tcctgtggga gctgtgacca acgctaagaa acctggcaaa      2880
     atacgcataa tatgggacgc ggccgccaaa gttgacggag tatctctcaa cactgctttg      2940
     ctgaagggtc cagatcagct tgcttcgctt cctggtgttc ttttccgatt tcgtctgtac      3000
     catgtggcga ttagcgcaga tattcaagaa atgtttcacc aggtacatat tcgtgaaagt      3060
     gataaacatt cgcaacgatt cttgtggcgc tcagaccctt ccgaaaagcc aacgatccat      3120
     ttgatggatg ttgccacctt tggctctacg tgctccccag cgtccgccca atacgtgaag      3180
     aaccttaacg cgagggagca ttccggccaa tttcctcgag cagcgcagag tataatcaaa      3240
     tgtcattacg tggacgacta tttagaaagt ttcgacagtg aagaagaagc ctatcaaata      3300
     gcaaaccaaa ctcgtcttgt tcaccggaat ggcgggttca ctcttcgtgg atggcgttcg      3360
     aatagtgagc gagttctagc tcgccttgga gaagtgaagt ccttttcctg taagaacctt      3420
     agcctcgttg gtaatgagca atccgaacgt gtccttggca tgctgtggac ccctcgaaca      3480
     gatgagttaa gctactctac tcacatgagt gaggatgtgc gaaaattgat cgccaccaat      3540
     atgcgccctt cgaaacgaca aatactgcga tgcgtgatga ctttattcga cccactggga      3600
     atgttggcgc ctttcctaat acacggaaaa gtacttatac agtacttatg gcgagcaggc      3660
     gcagattggg atgagcaagt agacgacaac gcatttgaac tctggaaaaa atggaccaaa      3720
     atgatcgaat ttatttcaac cattcgtctt ccacgttgtt actttccaga ggccacttcg      3780
     gaaacctata actacgccga aatgcatgtt ttcgttgatg ccagcgagac tgcgtattcc      3840
     tgtgttgtgt acctccgcac gttaactcga gaaggcaatc cacaatgcgc tcttgtcgct      3900
     ggcaaagcta aggtggcacc agtaaagcca atgtcggtac caagattaga gctacaggga      3960
     tgtgtacttg gaactcgctt gatgaagttc gccttagaga accacaacac tcctgttatc      4020
     agaaggtgct tgtggacaga ctctactacg gcgttatcat ggattcgtgc agatcctcga      4080
     aactaccgtc ctttcgttgc tcaccgtgtg ggagaaatcc ttgattcgtc gaaggctagt      4140
     gaatggagat ggatcccctc aaaattgaat cccgcagatg aagcgaccaa gtggggaagt      4200
     ggcccctact tcaccgaaga aagtaagtgg ttctgtggtc ctgatttctt aagacagtca      4260
     gaggacaatt ggccacaatc aagaaaacag ttgcctgtaa ctaccgaaga aatgcgccca      4320
     gtcgtcctat atcatgcggt gatagaaccg ttcatcaact atgaacgatt ttctcgctgg      4380
     gagaggctac accgtgtaat ggcttacgtg atccgcttcg tcgacaacgc tcgaacagga      4440
     aacccgagac gcacgggacc actacttcaa gaagagctgc taaccgctag agaagctatc      4500
     cacaagcaag tgcaacggga aacctatcct gatgaggtgc tgatattatc gagaaatgcg      4560
     gttttacctt caaatcaacg aaaagcgatc gattcgggga gcgttttgta ccaatacgta      4620
     ccgaccatgg atgacagggg tgtaattcgc caaaatagtc gagcgaggaa ggcaaaacat      4680
     ctgctcgctg actttcgata tccagtactc atgcctagag aacaccctgt gacatcacta      4740
     ctcgttgatt ggtatcaccg cacttacagg catgctaatc acgagacagt gcttaacgaa      4800
     atgcgacaac tgtacatggt cccgcgactc cgaacattgg tacgaaaaat ttctcgcaat      4860
     tgtcagttat gcaaacttcg gagggccctt ccacaagttc cgcctatggc tccgttacct      4920
     tcagtacgtc ttgccgacca tgttcgccca tttacttata ccggtataga ctattttgga      4980
     cccctgttgg taaaagtagg aagatcaaat gtgaaaaggt ggatcgttct cttcacctgt      5040
     ctcacggttc gggcagtcca tctagaggtc gcctacacct tatctgctgc atcttgcatt      5100
     tcgtgtgttc gaagattcgt ctctcgacgg ggttctccaa tagaattttt caccgataat      5160
     ggaaccaatt tccacggagc ggaacggatt ctgcgagaac aaattagtca agatcttgca      5220
     tatactttca ccaatgcttc aacaaaatgg acttttattc caccaggcgc tccgcacatg      5280
     ggaggtgcgt gggagcgtct ggtaagatcg gtgaagactg caatggaatc ggcctactca      5340
     gttggaaagc tagatgatga aggtctatac acaatggttg tggaggcgga gcacttagtc      5400
     aattccaggc ctcttacgta cctgccgatt gactcggaag aatctgaagc actctcgcca      5460
     aatcactttc tcctaggaag ctcgagtgga gtcaggcaac ctccagcacc aattttgtcg      5520
     tatccaagaa tcattcgaaa cacgtgggat gaaattcggc gaagactcga cattttttgg      5580
     aaacgctggt taaccgaata tttgccagtg atccgtagac aagctaaatg gttcagtgaa      5640
     gtccgagccg ttactgaagg agatttggtt ttaattgccg atgaggaaaa acggaacgga      5700
     tggactcgtg gaagagtaat taaagttgtg aaggacagtg aagggagaat acgccaggca      5760
     atagtacaaa catcaaacgg tcaactacgt cgtccggtgt cgaagctagc gctaatggat      5820
     gtagaaggag agcatcgtgc agtcttggct ggcagcaaga tgcacccggg agagga          5876
//
ID   BEL-814_AA-LTR repbase;    DNA;    INV; 457 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-814_AA-I;
KW   BEL-814_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-457
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-457
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2032-2032 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 457 BP; 150 A; 77 C; 83 G; 147 T; 0 other;
     tgttggcgta ggacaatgat cggcaaccct gccgtcagga tgtaaatacg cccgtctata        60
     ctttatagac tagatatact tcagttgctt gtcatatcat tctacctgtc atcttctaaa       120
     gaaagcattg atcgaacaac attgttataa agatttccct gaatttatta ctttattttt       180
     ataaatagtt gcatcctgaa aatcactaaa ggtatacgat acgataatac gattgtgcaa       240
     ttattctaat ttaacttagc aattctaata tagaacccga cctacgtggc ggaacagcgg       300
     attgaattta ttggccaatt agcttgcaag gcccactgaa atagtaagta agattgtagg       360
     agtaaaaatg gatattaatg gatttataat tgtagttttg aagcggaata tacgactatc       420
     aaaatcagtg agacgacctt ttatttgttg gccaaca                                457
//
ID   BEL-815_AA-I repbase;    DNA;    INV; 6163 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-815_;
KW   BEL-815_AA-I; BEL-815_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6163
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2166-2166 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..6161
FT                 /product="BEL-815_AA-I_1p"
FT                 /translation="MSSKRSNSGSGKNSAASLLTGRKVSSASATKTAERFE
FT                 SEIVVTTTETVVVATANSPIVTASAASAIDAAAVRSGTMDAEVAGATCAAT
FT                 NVPSRTTNSHKGAVSKQTATAAKHYLKAVSSHNRGPVVVRRNPKRDARPDR
FT                 YSHCELCAERDTSRMVQCDSCERWFHFCCVEVTDGIADVSWNCPLCPPKEQ
FT                 RNTPIESIKCNTPTKDSDSMKSRGKKSSKRSEQRKIELRLQKLEEQKQLEQ
FT                 RFLEEKYKILEELDSDTATDISEIELEKMSKISEWIRSTDRVGAVEDSGVV
FT                 AEDLLEEPRVIPDRVTQSIAHDDPEVNQQQSVFEAYRQTLPSFVPEQRSTP
FT                 QPSRPTFGHAREHSATMSRVPHPSRPLLTSALRPTQEPGLSPAEDTICLNR
FT                 SQLAARQAVSKDLPEFDGNPEDWPLFFSMYSSSTQMCGFSNEENMLRLRKC
FT                 LRGRALEAVRCRLLHPSNVSGVLATLKMLYGRPEAIVQAAIRKIRSLPPPD
FT                 IDRLESLVNFALTVENLVSTIEACGVQDFVYNASLKYELIDRLPSTLKLDW
FT                 AKYSRGNQAPNLLDFSSWLYSLAEDAAAVMQTTTNASRVKGNKKDAVLNVH
FT                 SETDDDRNELPALTQESRSNRDVIKECFVCKGPCPYFAKCKRFIELSYESK
FT                 WAAIREAKMCRKCLRKHNGSCRQQTECGINGCTYLHHPLLHAEKQEMTANI
FT                 SRQREATTNTSCNIHQAQTNGVLFRIVPVLLHGPSKTIQTYAFIDEGSELT
FT                 LMENSLATELGLRGSQKALCLKWTGDFRRMENESQQVEMDISSTGNISQRY
FT                 KLTNVRTVQNLKLRPQTLLASELQIRYRHLAGIPVESYINASPQILIGLDN
FT                 AQLGYAFKSREGKPFEPIAVKTRLGWIIYGSCSPNRHSKYHVNFHGLQACE
FT                 CNGVTDDNLHAAMKSYFAIDSLGISQPSKLSLSVEDQRAMDILETVTRIKD
FT                 GRFESGLLWKYDNVRLPDSKAMARRRWECLERRMRKDEKLSETLQAKMNEY
FT                 IDKGYVRKLTEDELKVRHGREWYLPVFPVYNPNKPGKLRLVWDAAATSQGI
FT                 SLNSVLLKGPDLITSLLSILIQFREYRIAICGDIREMFHQVLMKEDDQHCL
FT                 RFYWKEHMENHEPNVYVMKVMTFGACCSPTTAQYVKNINAKRFEQECPQAV
FT                 NAIEKKHYVDDMLVSVETEEEAVELAHAVKRIHAAGGFEMRNWLSNSPKVS
FT                 ASLKEVTIDEKNLGIGEDITEKVLGLWWNTSTDCFIFKVSSRYDQDLLDGI
FT                 RRPTKREVLRTLMMMFDPLGFIAHFLMYVKVLLQEIWRSSIDWDSPIEESQ
FT                 FDKWLLWLKVLPEVANIQIPRCYRKLVSLEYGYNIQMHTFVDASENGFAAV
FT                 VYLRFEQDDVVETSFVSAKTRVAPLKFLSIPRSELQAGILGVRLANSVAQS
FT                 LSVNVVDRFFWTDSRDVLCWLNADHRRYSQFVAFRVSEILETTERKEWRWV
FT                 PTKLNVADEGTKWTRLPDFSASSRWFKGPDFLLHPKDQWPSMQLCGSTDTE
FT                 LRAHLLTHTCTTEPIVTPENFSKWKTMLRSTAYVFRYISNSKQMIKMKQRI
FT                 SGPLSQQELARAENYLYRSAQISEYVEELAVLVSNRSGQTEKRRIPKSSPI
FT                 AYLCPFIDENDVLRVRGRTGACTLIDFDAANPIILPRNHHITSLIVLHYHR
FT                 LYHHQNHNTVLNEIRQRYRIPRLKSVYYKVRKLCQECKNDGATPQPPAMSD
FT                 LPPARLAAYTRPFTHMGVDYFGPITISIGRRTEKRWVLIATCLTIRAVHLQ
FT                 IAHNLSTDSCIIALRNVMARRGTPAMIYSDQGTNFRGANRELKVAVESLEK
FT                 ERLMTEFTTPHTRWSFNPPASPHMGGAWERLIRTVKQNLNKLLPTVTPSYE
FT                 VLENVLIEVENVINSRPLTSIPLDDDESPVLTPNHFLLGSSNGLRPWVPYD
FT                 DNSKVLRNCWQLSQTLANQFWKQWVRDYLPTITRRTKWFSRAKPIEVEDIV
FT                 IIVDPSSPRNCWPKGRVIATKPGADGQVRWATVQTSSGIYERPAVRLAVLD
FT                 VGVRKDTPQDDHRRIPGG"
XX
SQ   Sequence 6163 BP; 1812 A; 1425 C; 1473 G; 1453 T; 0 other;
     tcttacaaaa ttcttttgct cgctttaaaa tgtctagcaa aagatcgaac tctggatcag        60
     gcaagaactc tgctgcatct ttgctcaccg gtcgaaaggt atcgagtgcg agcgcgacga       120
     agacagctga gagatttgaa agtgaaattg tcgttacaac aaccgaaaca gtggtagtcg       180
     ctaccgctaa cagccccatt gtaactgcaa gtgcagcaag tgcgattgat gcagcggccg       240
     tcagaagcgg cacaatggat gcagaggtag caggcgcaac ttgcgctgcc acaaacgttc       300
     ccagtcgtac gaccaattcc cataaaggcg cagtttctaa gcaaacggct actgccgcta       360
     aacattatct caaagcagtc tcttcgcata atcgtggacc tgtcgtagtc agacgtaatc       420
     cgaaacgtga cgcgcgtcct gatcggtata gtcactgcga gttgtgtgcc gaaagggata       480
     cgagtagaat ggtgcagtgt gacagctgtg aaagatggtt tcatttctgc tgcgtagaag       540
     tcaccgatgg aatagccgat gttagctgga actgccctct ctgtccgccc aaggaacaac       600
     gaaatacacc aatcgagagt ataaaatgca atacgcccac taaggattcc gattccatga       660
     agtcccgtgg taagaaaagt agcaaacgga gtgagcaacg aaaaattgag cttaggcttc       720
     agaaactgga agaacagaag cagctagaac aaaggttcct ggaagaaaaa tacaaaatcc       780
     tggaggagct ggatagcgat accgcgacgg atatcagcga aattgaacta gaaaagatgt       840
     ccaaaatttc ggaatggatc agaagcacag accgtgttgg ggcagttgaa gattccggcg       900
     tcgtagcaga ggatctgctc gaagagccta gggtaattcc tgatcgcgtt acacaatcaa       960
     tagcgcacga tgatccggag gtaaaccaac aacagagtgt gtttgaagcc tatcgtcaaa      1020
     cattaccaag ttttgtcccg gaacaacgtt caacccctca gccgtcgaga cccacatttg      1080
     gacatgcgag ggagcattcg gcgaccatgt ctagagtacc gcatccgtct cgacctttgt      1140
     tgacctcagc tctacgcccg acacaagaac ccggtttgag tccagcggaa gacacgattt      1200
     gtctcaaccg cagccagcta gccgcacgac aagcggtgtc gaaggatctg cccgagttcg      1260
     atggtaatcc cgaggactgg cctttgtttt tctcgatgta ttcctcatca acgcagatgt      1320
     gtggcttttc aaatgaagag aatatgttgc gactccggaa atgccttaga ggaagagcat      1380
     tagaagccgt taggtgtaga ttgctacacc catccaatgt cagtggagtg cttgccactt      1440
     tgaaaatgct ttacggcagg ccggaagcaa ttgtgcaagc tgcaattagg aagattcggt      1500
     cactgcctcc tccggacatc gatcgactgg agagcctagt taatttcgca ttaaccgtcg      1560
     aaaacctggt gtctacgata gaagcatgtg gggtccaaga ctttgtgtac aacgcctcgc      1620
     taaagtacga gttgatagat cgattaccgt cgactttgaa attagactgg gccaaatact      1680
     ccagaggcaa tcaagctcca aatctgttag atttcagttc ctggctgtat tccctggcag      1740
     aagatgcagc tgcggttatg caaacaacaa ccaatgcatc acgtgtcaaa ggcaacaaaa      1800
     aggatgcagt tctgaacgtc cactccgaaa ccgacgacga tcgaaacgag ctacctgccc      1860
     taacgcaaga gtctagaagc aaccgagacg tgatcaaaga gtgctttgtg tgcaaggggc      1920
     cttgtccgta tttcgctaaa tgtaaacgct ttattgagtt gagttatgaa tctaagtggg      1980
     cagcaatccg tgaagccaaa atgtgccgca agtgcctgcg caagcataac ggatcatgca      2040
     gacaacaaac agaatgcgga atcaatggct gcacatactt gcaccatcct ctgcttcacg      2100
     ctgagaaaca agagatgact gcaaatattt cccgccaaag agaagctacc acaaacacaa      2160
     gctgtaatat tcaccaagcg caaactaacg gtgtactatt tcggatcgta ccagtattgc      2220
     tgcatggtcc atcgaagaca attcaaacat acgcgttcat cgatgaagga tccgaactca      2280
     cccttatgga aaactccctt gcgactgagc tcggattgcg aggatcccaa aaagccctat      2340
     gcctaaaatg gactggtgat tttagaagga tggagaacga gtctcaacaa gtagaaatgg      2400
     atatttcttc gacgggaaac atttctcaac gatataagct gactaacgtc cgcaccgtac      2460
     agaatcttaa gctccgacca caaacgttgc tagcttctga attgcagatc cggtaccgtc      2520
     acctagctgg aattccagtt gaatcgtata tcaacgcaag tccacaaatt ctaatcgggc      2580
     tggacaatgc gcagctgggc tatgcgttca agagcagaga agggaaacca tttgagccaa      2640
     tagccgtgaa aacccgctta ggatggatca tctacgggag ctgttcgcca aatcgccact      2700
     ctaagtatca tgttaacttt catggtctgc aagcctgtga gtgcaatgga gttactgatg      2760
     acaatctgca tgcagcaatg aaaagttact ttgccatcga cagccttggt ataagtcagc      2820
     catccaaact gtcactctca gtggaggacc aacgtgccat ggatattctt gaaacagtaa      2880
     ctcgtattaa agatggtcgc ttcgagtcag gactcttgtg gaagtacgat aatgtaaggc      2940
     tccccgacag taaagcgatg gctcgtagaa ggtgggaatg tttggaaagg cggatgagga      3000
     aggacgaaaa actatcagaa actctgcagg cgaaaatgaa cgagtacatt gataaaggat      3060
     acgtgcgaaa actgactgag gatgagctca aggtccgtca tgggcgagaa tggtacctgc      3120
     cagtatttcc ggtttataat cccaacaaac ctggaaaatt aagattagtt tgggatgcag      3180
     cagcaacatc ccaaggaatc tctttaaact cagtattact taaagggccc gatctgatca      3240
     cgtcattact ctccatcctg attcaatttc gtgagtatcg aattgcaata tgtggggaca      3300
     tacgggagat gttccatcag gtcctgatga aagaagatga tcaacattgc cttcgattct      3360
     attggaagga acatatggag aaccatgaac caaatgtgta tgtcatgaag gttatgacct      3420
     ttggggcatg ttgctcaccc acaacagctc aatatgtcaa aaatataaac gcgaaacgat      3480
     tcgagcaaga atgtccacaa gcagtcaacg ccattgagaa aaaacattac gttgacgata      3540
     tgcttgtcag tgtggaaacg gaggaagagg cagtggaact agcgcatgca gtgaagcgaa      3600
     tccatgccgc agggggtttc gaaatgcgaa actggttatc caactcacca aaagtgtcgg      3660
     cgtccttaaa ggaagtaaca atcgacgaga agaatcttgg cattggagaa gatattacgg      3720
     aaaaagtgtt aggtctttgg tggaatacat cgacagattg ttttatattc aaagtatcct      3780
     cacgatacga ccaggactta ttggacggaa tccgtcgacc taccaaacgc gaagtgctta      3840
     gaacacttat gatgatgttc gatccgttgg gttttatcgc ccatttttta atgtacgtca      3900
     aggtcctgct ccaagaaatt tggaggtcct cgattgactg ggatagtccc attgaagagt      3960
     cacagtttga caagtggtta ttatggctga aggtcctgcc cgaagtagca aacatccaaa      4020
     ttccacgttg ttaccgaaaa cttgtttcgc tagaatacgg ctacaacatt caaatgcata      4080
     ctttcgtcga cgccagcgag aacggatttg cagcggtggt ttatctaagg ttcgaacaag      4140
     atgacgtggt agaaacatcg ttcgttagtg caaaaacgag ggtcgctcca ctgaaatttc      4200
     tctccattcc tcgctcggag ctacaagctg gtatactcgg cgttcgttta gcaaacagtg      4260
     tagcccagtc actttccgta aacgtggtgg accgtttctt ctggactgat tccagagatg      4320
     ttctctgctg gctgaacgct gaccatcgac gatatagtca gtttgtagcg ttccgcgtta      4380
     gtgagatatt agagactact gaaaggaaag agtggcgatg ggtcccaaca aaattaaatg      4440
     tggccgacga aggaaccaaa tggacacgtt taccagattt cagcgcttcg agtcgttggt      4500
     tcaaaggacc agatttcctt ctacatccaa aggaccaatg gccttctatg caactgtgtg      4560
     gatcgacgga tactgagctt cgtgcgcatc ttttgactca cacttgcaca accgaaccaa      4620
     tcgtgacacc cgaaaacttc tccaaatgga aaacgatgtt acgtagtaca gcatacgttt      4680
     ttcgttacat tagcaactca aaacagatga ttaaaatgaa gcaacgaata agtggtccgc      4740
     tttcacagca agagttggca agagctgaga actacctcta tcgctccgct cagatttctg      4800
     aatacgtcga agagctggca gtgcttgtca gcaatcgctc cggtcagacg gagaaaaggc      4860
     gaattccgaa aagtagccca atcgcctacc tctgtccttt tattgatgaa aacgatgtgc      4920
     taagagtacg cggcaggact ggtgcttgta cgctaatcga ctttgatgcg gctaacccta      4980
     taattcttcc cagaaatcac cacattacta gcctgatagt gcttcattat caccgtctct      5040
     atcatcacca aaatcacaac actgtcctaa atgaaattcg tcagcgttac agaattccac      5100
     gcctcaaatc agtttactac aaagttcgta aactttgtca agaatgtaag aatgatggag      5160
     caactccgca accaccggcc atgagtgatc tgcctccagc tcgtttagct gcctacacac      5220
     gtccattcac gcacatggga gtggattact ttggacctat cacgatatcg atcggacgtc      5280
     gaaccgagaa acgctgggta ttgatagcta cttgcctgac aatccgtgca gtacatttgc      5340
     aaattgctca caatctcagc accgattctt gtatcatagc gcttcgcaac gtcatggcta      5400
     gaagaggtac accagcaatg atatacagtg accaaggcac aaatttccga ggtgctaacc      5460
     gggaactgaa ggtagcggtg gagagtctag agaaggaacg cttaatgact gaattcacca      5520
     ctccccatac caggtggagc ttcaatcccc ccgcctctcc gcatatgggg ggtgcgtggg      5580
     agcgcctgat acgcacggtc aagcaaaatc tcaacaagtt gttgcctacc gttacaccgt      5640
     cctacgaagt tttggaaaat gtactgatcg aagtagagaa cgtaatcaac tcgcgtccac      5700
     tgacaagtat tccattagac gacgatgaat ctccagttct gacgccaaat cattttttgt      5760
     tgggatcctc taatggatta agaccatggg taccctacga tgataattcc aaggtgctta      5820
     gaaactgctg gcaactttcg caaacgttgg caaaccaatt ctggaagcaa tgggttcgag      5880
     actatctacc aacaattaca cgccgtacta agtggttctc tcgagcaaaa ccaattgaag      5940
     tagaggatat cgttatcatc gtagatccga gttcaccaag aaactgctgg ccgaaaggtc      6000
     gagttattgc cacgaaaccc ggagctgatg gccaggtaag gtgggctaca gtgcagacta      6060
     gcagcggaat ctatgagcgc ccagccgtaa gactcgccgt gcttgacgta ggcgttcgta      6120
     aggatacacc tcaagatgac catcggcgta ttccgggggg gag                        6163
//
ID   BEL-815_AA-LTR repbase;    DNA;    INV; 836 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-815_AA-I;
KW   BEL-815_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-836
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-836
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2033-2033 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 836 BP; 284 A; 156 C; 125 G; 269 T; 2 other;
     tgttattccc gccacgtcaa caaacccgtc tagccctacg atccctctgc tttaagcccc        60
     ggtggccaag cattaccaca cccatatacc cgaaagaggg attgttaggc ataaccagta       120
     gtaggaaggt cgactaaaag gcaaggattg taaacattca atactgatca gaagtactgt       180
     ggagcgaaat attattcttt gaattgagct tatattctat cttaaattta tcttatcctt       240
     tatttacaat tagtatstaa aagtggcgta acaggtacga atagttcatg attcatggaa       300
     gctaattcgt gcaataagat tatggttaaa taatgcttac tctcctataa atgcttacag       360
     ccaaaattga attatcacct atatcattat aacaacaata tcatcgattg ttaatctaat       420
     ttatctactg ctaaggtgag cttaagcgac atatttcact tataaatgaa gctcaatatc       480
     atttttctta gtctagttgc ttaattggaa gattgctgtt aagttttgat gtgatcatca       540
     ttattktcaa tcttattaat cttaaggtga ggatatgaaa tctgtttcaa cataaactga       600
     actcaatcga actttattct aaatctaggt gttaagcgca aaatttgaag ttcaatcaaa       660
     cacttcagtg tatcctcaga tgcgaaaacg aatcaccaaa agtaagaatc gttatgacta       720
     tcctctaata actttaacta ataagttatt tgaaatctcc acaggaattt tgtaatttaa       780
     cacctcccga cgaaataaat tcacaaacat caagattcgt ttatcgctca acaaca           836
//
ID   BEL-816B_AA-LTR repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.07, Created)
DT   17-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-816B_AA-I;
KW   BEL-816B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-626
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-626
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2148-2148 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 626 BP; 211 A; 98 C; 115 G; 202 T; 0 other;
     tgttgcgacc cctcggtcgg cgcgactcat ctagactatt gttcttagct gtaccatgat        60
     cctacgtact ggcgtttaac tgataggtag agaaaaagat ttgaagccgt caaaatagat       120
     gattcgacaa aaaggctgtc tatatattgt tgttctcgat aattactact aaatttgaag       180
     tatcttacat ttagttttta catatatctt attacaaggt aattgagtga atcatagtaa       240
     accaaacaac ttaaattaat ttctaaattt ccttaaagaa ttgaattgaa cttactatat       300
     tagtcgaacc aaagggtcgt atgaaatcac tatttttagt aatcgtaagt ttaccaacta       360
     attacactat gaacccaatc attgaatgtt taaacttagt aggagccgag ctaggattga       420
     actacgtgct tgaagtaatt tcgggactaa gaaaggagga aaaaagaaca cgaaagaact       480
     aaacgtaagt ggatttgagg ccaaagtgaa ttggaagtaa tatatttgtt ctttcaggat       540
     ttttttaatg tgcgaaatat acattaggaa atcggaatcc cgtggtctcc ttttcttatc       600
     cctaatcgtt ggttggtaaa tcaaca                                            626
//
ID   BEL-816_AA-I repbase;    DNA;    INV; 6464 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-816_;
KW   BEL-816_AA-I; BEL-816_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6464
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6464
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..778
FT                 /product="BEL-816_AA-I_1p"
FT                 /translation="MLGRTPIRTRSNSAPRDGRSADVPRNVIGGNDGNHHC
FT                 KACADEDNTRMVQCDRCDDWYHFECVEVSQGVAHRDWQCSKCLSVSKGGRK
FT                 KASTKEPSSDPAVSTSVQTNPSIRVTSVPLNVVPQIPTTLPVFPNVTSGDV
FT                 NESAISHVPSNMMFPPMSTHSPNPSNAHVTISTCTASMLIPPSIFTLATFA
FT                 PYVRIIESIKPTGCLCCSQCLSWNGGYKTMPSHIFRPSSYQHPLSIQYHHS
FT                 NYRSFS"
FT   CDS           573..6461
FT                 /product="BEL-816_AA-I_2p"
FT                 /translation="YRRAYSHSPHSLHTFASSNPLSQPAVCAAPNAFPGMA
FT                 DIRQCLPTSSGPAVTNIPLASSTIIPTTGHSARQTSNEPLKSTSNAPRNNA
FT                 KQVFGETSSQHSGASKRSTKQKQLELELKILNEERKLQEEENLKKREYLQK
FT                 RYAILLEIASESSSVAEVEDERVGDRIDEWINNGMNVGRASVDQEPPPPPP
FT                 EIQGINVAMQPSSNNMLPNYIQPISTRTFAGQHENVPLRQPRMLPTSTMER
FT                 YFQIPSNPPEVPFRRPQVTYASVDRPNVNQQPNQQPRNASSLNLGRSSLRH
FT                 NMYEDDEGNLTRSQVVARQAVSRELPTFSGTPEEWPLFFSSFTTTTSMCGY
FT                 TAEENLVRLQKCLTGKAFESVKCMLMHPMNVTQIISTLKMRFGNPELIVHN
FT                 LMAKISSTPAPKVDKLDTIIEFALAVQNLCATIEACQLNEYSYNVALLREL
FT                 VDKLPASIKLDWARYRRNFSTVNLSIFSSWLYELAEDICPLASLPNDAKAQ
FT                 RLPKNHPAFLNAHADDVDSAPKNSSHPAVSFQSKPTDATCVVCKSNCPSVD
FT                 KCQRFDELGYNAKWAVVKEFGLCRKCLKNHKGVCKSQKVCGKNGCEYKHHH
FT                 LLHNNQRNATATVKPEDKSEATGESRELIAPKTSECECNIHHQFTNKTLFR
FT                 VIPVVLYGPNKAVRTFAFLDDGSSYTLMDAALAVELGIEGKREPLCLKWTG
FT                 NMGRLENKSIKLNVQISGSGTNQRKYWLQGVHTVSALDLFHQSLDAQELAN
FT                 QYEHLRGIPVESYQNAQPRLLIGVKNANLSYPLKGREGKLNEPIATKTRLG
FT                 WVLHGGSDEDEVLLAYHGVQACSCIEHQDDLLEQALRDYLSLEGLGVTKPD
FT                 KPLLSSEDQRALEILNKVVKTDGGHYETRLLWKYDQFRLPNSKPVALRRFH
FT                 CLESRMKRDPALALALREKIDDYKEKGYIRKLSESELQERMQRFWYVPIFP
FT                 VFNANKPGKLRIVWDCAAKTGNVSLNSMLIKGPDQLVPLNNDLYRFREYKI
FT                 AISGDIREMFLQVKIAKEDQNCQLFLWKDNPDDEAPSTFVSQVMTFGACCS
FT                 PSSAQFIKNLNAEKFVETFPRAVEAITKQHYVDDMLASVESEEEAIRLAED
FT                 VRSIHANAGFEIRNWISNSSTVLQALHQEKTERKSLHVGSDSSTAEKVLGM
FT                 WWCTDTDSFIYKLSPKHDSELLNGERKPTKSEVLRTLMSIFDPLGLLSNVL
FT                 VHLKILFQEIWRSAINWDDEIPDNLDEKWEQWLRIIPQLENISIPRCYRSL
FT                 TTIGADTNVQLHTFVDASEMGYAAVVYLRFQQGNSVECAIVGAKSRVAPLK
FT                 FVSIPRLELQSAVLGSRLANTITEALSFSINERVFWTDARDVLCWLRSDHR
FT                 QYTQFVGWRVSEILETTDIASWRWIGTKDNVADEATKLRRPLDLSRQSRWF
FT                 RGPEFLWQSKEVWPCEPFSINSTKEELRANLLYHEVASKPLFKAENFSDWN
FT                 RLLRMAATVIRFIGNIRQKLTANKRNTGPFSKDELVYAASLLYRQAQSASF
FT                 AEEISLLTNSDASRPIPKSSSIFTLNPYLDELQVLRMHGRISACEYASTDA
FT                 MNPVILPKDHYISKLVVQNYHKRYHHRNHETVLNEIRQVFRIPQLRRLFRK
FT                 VKLECQTCKNQRAVPKPPPMADLPRSRLAAYTKPFSYVGIDYFGPMIVTVG
FT                 RRSEKRWGVLITCLTIRAVHLEVANSLSADSCIMALRAFMARRGVPLQIYS
FT                 DRGTNFIAASKELNDALKDMDQQKVIQEITTQHTQWTFLPPSSPHMGGAWE
FT                 RLIQTVKTNLQAMLPMRHPTDEVLRNTLAEIENLINSRPLTHVPVEDPDAP
FT                 VLTPNHFILGSSTSGLKPATRLDDRALVLRRSWRESQREADLFWQRWLRDY
FT                 LPDLTKRTKWYSQVKPVEVDDVVVVVDPDLPRNCWPKGRVISVNQAKDGHV
FT                 RSVAVQTMTGIYERPVTKIAVLDVRREEAVTQDPGVPGG"
XX
SQ   Sequence 6464 BP; 1894 A; 1501 C; 1494 G; 1575 T; 0 other;
     attttaaaaa attcgtttaa ccggttccaa ctggaaaatg cttggacgaa caccgattag        60
     gacgagaagc aattccgcgc cccgagatgg gcggtcagca gatgtgccac ggaacgtcat       120
     cggtggtaat gatggcaatc accactgcaa agcttgcgcc gacgaggaca acacacgaat       180
     ggtccagtgt gatagatgcg acgactggta tcattttgag tgcgtcgaag tgagtcaagg       240
     tgtcgctcat cgtgactggc agtgctccaa gtgcctgtct gtctctaagg gaggtagaaa       300
     gaaggcttct acgaaggaac catcttctga tccagccgtg agtacatcag ttcaaacaaa       360
     cccatccata agagtaacat cagtaccgct aaacgtcgtt ccccaaatcc cgacaactct       420
     acccgtcttt cccaatgtaa caagtggcga cgtcaacgag tcagcgatat cacacgttcc       480
     ctctaatatg atgttcccgc ctatgtcaac ccactctccg aatccatcaa acgctcatgt       540
     taccatcagc acgtgtaccg cgtcaatgct gataccgccg agcatattca cactcgccac       600
     attcgctcca tacgttcgca tcatcgaatc cattaagcca accggctgtt tgtgctgctc       660
     ccaatgcctt tcctggaatg gcggatataa gacaatgcct tcccacatct tcaggcccag       720
     cagttaccaa catcccctta gcatccagta ccatcattcc aactaccggt cattcagcta       780
     gacaaacttc gaacgagccg ctgaaatcaa cgtctaacgc acctcgaaac aacgcgaagc       840
     aggttttcgg ggagacatca agtcagcact caggagcatc gaagagatca accaagcaga       900
     aacaacttga gttggaatta aaaatactga acgaggaaag aaaattacaa gaagaggaga       960
     atttgaaaaa gcgcgaatat cttcaaaagc ggtacgccat tcttctggag attgccagtg      1020
     aatcatcatc ggtcgctgaa gttgaagatg agagagttgg tgatcgtata gatgaatgga      1080
     tcaacaatgg tatgaatgtt ggacgagcat cagtggatca ggagccacca ccaccaccac      1140
     cagaaataca aggtataaac gtggcaatgc agccgtcttc taacaatatg ctgccgaact      1200
     atatccagcc aatttcaacc aggacgtttg ctggtcagca tgagaatgtt cctttgcggc      1260
     aacccaggat gttgccaaca tctacgatgg aacgatattt ccaaatccca agtaatccac      1320
     cggaagtgcc cttccgccgg cctcaagtca cctatgctag tgtagatcgc ccgaacgtaa      1380
     atcagcagcc aaaccaacaa ccgagaaacg caagttcact caaccttggc cgttcgtcgc      1440
     taaggcataa catgtatgaa gatgatgaag gaaatctaac tcgtagtcaa gtggtcgctc      1500
     gacaagccgt gtcccgtgaa ttgccgacat tcagtgggac tcctgaagaa tggccactgt      1560
     ttttctcgtc gttcacgact actactagca tgtgtgggta tactgcagaa gaaaatctcg      1620
     tgcggttgca gaagtgtctc accgggaaag ctttcgagtc cgtcaagtgc atgctaatgc      1680
     atccgatgaa tgtcacccaa ataatctcga ctttgaaaat gcgctttgga aatccagagc      1740
     tcattgtgca taacttgatg gccaaaatca gctcaacacc ggctcccaaa gttgataaac      1800
     ttgatacgat aattgaattt gctcttgccg tccaaaactt atgtgcgaca atcgaggcgt      1860
     gccagctgaa tgaatattct tataatgttg cgcttctccg agaactcgtt gataagttac      1920
     cagcttccat caagttagat tgggctagat atcgacgcaa cttttcaacc gtgaatctct      1980
     ctatcttctc tagctggcta tacgagcttg cggaagacat ctgtccgctc gcaagccttc      2040
     ctaatgatgc taaagctcag cggttaccaa aaaaccatcc agctttttta aatgctcatg      2100
     ccgacgacgt tgacagtgca ccaaagaatt catctcaccc agccgtatct tttcagtcta      2160
     aaccaacaga cgcaacttgt gttgtgtgca aaagcaattg cccaagcgtt gacaaatgcc      2220
     agcggttcga cgaacttggt tataatgcaa aatgggccgt cgtcaaggag tttggactat      2280
     gtcgcaaatg cctcaaaaat cacaaaggtg tatgtaaatc gcagaaagta tgtggcaaga      2340
     atgggtgcga atataaacac caccatcttc tgcacaataa tcaacgaaac gcaacagcta      2400
     ctgtaaagcc tgaggataaa tcagaagcga ccggcgagag tcgtgaactg atagccccaa      2460
     aaacatccga gtgcgaatgt aacattcatc atcagttcac caacaagacc ttattccggg      2520
     ttatccctgt ggttctgtat ggacccaata aagctgtaag aacgtttgcc tttctggatg      2580
     acgggtcttc ctataccttg atggatgcgg ctcttgctgt ggagttgggg attgaaggaa      2640
     aacgtgaacc tctttgtctc aaatggacag gaaacatggg tcgtttggaa aacaagtcaa      2700
     tcaaattgaa tgtccaaatt tctggaagtg ggacaaatca aagaaagtac tggctgcagg      2760
     gagtccatac ggtttctgct ttagatctct ttcatcaatc ccttgacgca caagaactag      2820
     cgaaccagta cgagcatcta cgaggaattc cagttgagtc ttatcagaat gcgcagccac      2880
     gtttactgat aggagttaaa aacgcgaatc ttagttatcc tttgaagggg cgcgaaggga      2940
     agctgaatga accaatagcc acaaaaactc gtctaggatg ggttttgcat ggaggctcgg      3000
     acgaagatga ggtactattg gcatatcacg gcgtgcaagc ctgttcttgc atcgagcatc      3060
     aagacgactt gttggaacaa gcactaagag actatctctc attagaagga ctcggtgtta      3120
     cgaaacctga taaaccactt ttatctagcg aagatcaaag agctctagag attttgaaca      3180
     aggtagtcaa aacggacggt ggacattatg aaactcggtt gctctggaaa tatgaccaat      3240
     tccgtctacc aaacagtaaa cccgttgctt tgcgtcgatt tcattgcttg gaatctagaa      3300
     tgaaaaggga tccagctctg gcgttggctc tacgagagaa aatcgatgat tataaagaaa      3360
     aaggttatat tcgaaaactt tcagaatcgg aactgcagga gaggatgcaa cgcttctggt      3420
     acgtccctat ttttcctgta ttcaacgcaa acaagccagg gaaattgcgt attgtctggg      3480
     attgcgccgc taagaccggg aatgtatctt tgaattcgat gctgataaag ggccccgatc      3540
     aattggttcc tctcaataat gacctgtaca gatttcgcga gtataaaatt gcaatcagcg      3600
     gtgacataag agaaatgttt ctccaagtaa aaatcgcaaa ggaagatcag aactgtcaac      3660
     tgtttctgtg gaaggacaac cccgacgatg aagcaccaag taccttcgta tcacaggtaa      3720
     tgacgtttgg cgcatgttgt tccccgagca gtgctcagtt tatcaaaaac ttgaacgcgg      3780
     agaaatttgt ggaaacattt ccgagagcag tcgaagccat cacaaagcag cactacgtag      3840
     acgacatgtt ggccagcgta gaaagcgaag aggaagccat ccggttagca gaagacgtcc      3900
     gatcaataca cgctaatgct ggctttgaaa ttcggaattg gatttcaaat tcatccaccg      3960
     ttctccaagc tttacaccag gaaaagacgg aacgcaaaag cctccacgtt gggtcggatt      4020
     catctactgc ggaaaaggtt ctcggcatgt ggtggtgtac ggacacagac agtttcatct      4080
     acaaactctc gccgaaacat gactctgagc ttttaaacgg cgagcgaaag cccaccaaaa      4140
     gcgaggtctt acggacactt atgtctattt tcgatccctt gggtttatta tctaatgtcc      4200
     ttgtccacct caaaatactt tttcaagaaa tttggcgatc cgctataaat tgggatgatg      4260
     aaataccaga caacctcgat gagaaatggg agcaatggct acgcattatc cctcaattag      4320
     aaaacatcag cattcctcgc tgctaccgtt ccttaactac tattggagct gatacgaatg      4380
     tccagctaca tacttttgta gatgctagtg agatgggcta cgcagcggta gtatacttac      4440
     ggtttcaaca gggtaactcg gtagaatgcg ccattgtcgg agcaaagtct cgagtagcgc      4500
     ctttaaaatt cgtctctatt ccacggctgg agctacaaag tgctgttctt ggcagcagac      4560
     ttgccaatac aataactgag gcactatctt ttagtataaa tgaacgagtg ttttggaccg      4620
     atgcgcggga cgttttatgt tggctacgct ctgatcaccg tcagtatacg cagttcgtgg      4680
     gttggcgagt tagcgaaata ctggaaacaa cagacattgc tagctggaga tggattggaa      4740
     cgaaagacaa tgtggctgat gaagcaacga aattgagacg tccactcgat ttgagccgac      4800
     aaagcaggtg gttcaggggt ccggagttct tgtggcaatc aaaggaagta tggccatgtg      4860
     aacctttcag catcaactca acaaaggaag aacttcgtgc aaatcttctg tatcatgagg      4920
     tggcctcaaa accgctgttc aaggcggaga atttttcgga ctggaatcgt ttgttgcgta      4980
     tggccgccac agtgatcagg tttatcggga acatccgaca aaaattgacg gccaacaagc      5040
     gcaatacagg accattttcc aaagatgaac tggtatatgc tgcaagtctt ctatatcggc      5100
     aggctcaaag tgcatcattc gctgaagaaa ttagtctttt gaccaactcc gatgccagta      5160
     ggcccatacc taaatcaagt tcgattttca ctctaaaccc gtacctggac gaactgcaag      5220
     tcttgcgaat gcatggacgc ataagcgcct gtgaatacgc tagcaccgat gccatgaatc      5280
     ccgtaatact tcccaaagat cactacatat ctaagcttgt agtacagaat taccacaagc      5340
     gataccatca tcgcaatcat gagacggttt taaacgaaat acggcaggta ttccggattc      5400
     cacaacttag aagattattc cggaaagtta aattggaatg ccaaacatgt aaaaaccagc      5460
     gagctgtccc caaacctcct ccgatggcgg atctcccaag atcaagatta gctgcctata      5520
     ctaaaccttt ttcgtatgtc gggattgatt attttggacc catgattgtc acagtgggga      5580
     gacgaagcga gaaacgttgg ggagtcttaa taacgtgcct gacaatcaga gcggtgcatt      5640
     tagaagttgc caattcttta agtgcggatt cttgtattat ggcattgcgg gcattcatgg      5700
     caagacgagg agttcccctt caaatatata gcgatcgggg aactaatttt attgcggcta      5760
     gtaaggaact gaacgatgca ttgaaggata tggatcaaca gaaagtcatt caggaaatta      5820
     ctacccaaca tactcaatgg acatttcttc caccctcatc tccacacatg ggaggtgcgt      5880
     gggagcggct tatccaaacg gttaagacca acttgcaagc gatgctgcca atgcgacacc      5940
     caactgacga agttctccgc aataccctgg ctgaaattga gaatctcatc aactcgcgtc      6000
     cgttgacgca cgtgccggtg gaggatcctg acgcacctgt actaacacca aatcatttca      6060
     ttttgggttc atctactagt ggattgaaac ctgctactcg tttggatgac agagccttgg      6120
     ttctgcgacg gtcatggcga gagtcgcaaa gagaagcgga cttattctgg caacgttggc      6180
     ttcgtgatta tctgccggac ttgactaaac gtactaagtg gtactctcag gtcaaaccgg      6240
     tagaagtgga tgacgtcgtg gttgtagttg atccagatct tcctagaaat tgttggccca      6300
     aaggtagggt catttcagtc aaccaagcaa aagacggaca tgtgcgatct gtagctgtac      6360
     aaactatgac cggaatatat gagcgacccg taacgaaaat cgccgtccta gatgttcgtc      6420
     gcgaagaagc ggtaacccag gaccctggcg tacccggggg ggag                       6464
//
ID   BEL-816_AA-LTR repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-816_AA-I;
KW   BEL-816_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-633
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-633
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2127-2127 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 633 BP; 221 A; 103 C; 114 G; 193 T; 2 other;
     tgttgcgacc cctcggtcgg cgcgactcat ctagactatc tatcctaaca gtaccatgat        60
     cctgtgtact ggcgtttaac tgataggkag agaatcagaa ttgaggccgt cagattagat       120
     gattcgacaa taatacggtg tatatcttgt tgttcccgat agttattatt aatttgaagt       180
     aacctacatt taacattccc atatctatta ttacaaggta actgagtgaa ctatagtaaa       240
     tcaaataaca taaattaatt cataaatttc cttaaagata aattgaattg aaccactata       300
     atagccgaag caaatggtcg tatgaattca ctattttcag tcaccgtaag tttacaaata       360
     attatattat gcaccaaata attaaaaatc taaacttagt aggagctgag ctaggaattc       420
     aactaagtgc tcaattgaac taaattattt cgggactwag aaaggaggaa aaagaacacg       480
     aaagaactaa acgtaagtga agttggggcc agagtggaat gatagtaatg tatctgttct       540
     ttcaggaatt ttttaatgtg cgaaatagac attaggaaat cggaatctcg tggtctcctt       600
     ttcttatccc taacattgat tggtaaatca aca                                    633
//
ID   BEL-817_AA-I repbase;    DNA;    INV; 6335 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-817_;
KW   BEL-817_AA-I; BEL-817_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6335
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6335
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2167-2167 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..6332
FT                 /product="BEL-817_AA-I_1p"
FT                 /translation="MADKGNDSQMPRNCASCSKPDEHDDMVACDACHEWHH
FT                 YSCARVDATVQDRSWKCASCELPNDPNTNQHHIGVTEPNKKGAKPKVPAVQ
FT                 PESLAVPPKKLVAKSSTGSKVSRKSKKGEASTTSSARIRLELELKAVEEQQ
FT                 RIREEELAAEKELQDLERKLEEELREKELAIEAKRITDAKAALKKKMEVER
FT                 EYRKQQMAIRRQSEEEKVKLIRQASEYGSGRGSSIGTDTGSKDKVEDWLKK
FT                 STQQTAGQSTEFTSAVDPSNGPKQVFVEQKTNHQATINIRDDRSLDQHPLT
FT                 TPNKVVSPSHFLPTKPVVDQKTVVQQARTNDFAERHFVDEFEKLGMGETSG
FT                 TRVITGNKNLKLLVSGVDCIDRFVSRDLPSVRGRRESESRLSNAGGRFLST
FT                 GDDSEHHSVEVHPNASGIGQNIRAPIRVSTDQREAGFGVRSEQPVPRSVAP
FT                 VNQERYSEDYLDGPTNRQLAARQVMGKDLPMFSGNPEEWPIWISNFRRSTS
FT                 TCGFSDDENLIRLQRCLKGSALESVRCRLLCPASVPHVIRTLEMRYGRPET
FT                 LIRSMTERVRRLPSLRINELDGIIEFGLVVDNLVQHLKNAGQQAHLTNPSL
FT                 LHDLVGKLPVDYKLKWSAYKSMRHNVDLSTFGEFMSTLVELAYDVADDFPS
FT                 NEKVQKQKSKERVFVQTHTETAVALESESDNSSLGARTSKKPCTFCKVEGH
FT                 RVAECSRFKSMDVSGRLNVVQQSGVCRSCLNFHGKWPCKTAKECGVNDCRL
FT                 KHHPLLHSPSSVAPAVVSTSHLSEPLVSEGPLFRIIPVTLYGKNCKMNVYA
FT                 FVDEGSKITLLEDSVADQLGLAGPTEPLNLQWTGNIKRSEPKSRRISAYIA
FT                 AQDSPKQYQLSNARTVGGLLLPSQTVNYEEMCSRYAHLRGLPIRSYEKVSP
FT                 KLLIGLDNLKLTVPLKVREGKWVEPIAAKSRIGWSIYGCATAPTSTVVCGL
FT                 HFGGWTDQEQELNQLVRDYITLDNIGVMPPTTHLESEEDKRARMLLQTTTR
FT                 RIGKSFETGLLWKTDDVQFPNSYGMAFKRMCSLERRLNQDLTLYERVRQQV
FT                 RDYEEKQYAHKATHHELSTTNADQCWYLPLGIVLNPKKPNKLRMIWDAAAK
FT                 VDGVSLNTALLKGPDFLTSLPSVIAKFRLYRYALTGDIKEMFHRFFIRPQD
FT                 RQFQRFLFRDHPETEPVTYVMDVAIFGAACSPSSAQYIKNLNAKEFEMSYP
FT                 RAAEAIIHRHYVDDYLDSFGTVEDAVKIGRQVKNIHAEGGFEIRNFLSNDP
FT                 TIAARVGDESLEAEKNIGEDKHERVESVLGMKWMPNSDIFTFTVALRDNLL
FT                 HVLEESHIPTKREVLRTVMSFFDPMGLIAFFLIHGRTIMQDIWASGIGWDD
FT                 PITDQIWMQWKEWIGLIPKLNTLQIPRCYLSEATESSYSKLQVHVFVDASQ
FT                 AAYACAVYFRVETPEGPEVSLVAAKSKVAPLKLLTIPRLELQAAVLGSRLL
FT                 NNVIAMHNLPVMKRVLWSDSNTVLAWIRSDQRRYHQYVGFRIGEILSMTDV
FT                 NEWRKVPTKENVADDATKWGTGPDVKSESRWFRGPAFLKKPEASWPGRDDQ
FT                 IDTTEEELVMCNLHEELRPSLVDVERFSKWEKLHRTMTYVHRFIENIRRSQ
FT                 RNEERILGALTHEELVAAERSLWIQAQAECFASELQQVKKTKGRPYDVHGA
FT                 LSKSSKIYKQCPFMDETGVMRKRSRLENADWIPYCTKYPVILPHQHRITLL
FT                 LVDYFHRRLRHRNRETVVNEMRQLYEISRLRSLTYKVTNDCMACKIRRASP
FT                 SSPLMAPLPKVRVSPYVRPFTFVGVDYFGPVLVKVGRSNVKRWIALFTCLT
FT                 IRAVHLEVVHSLSKESCVMAVRRFVSRRGAPAEIFSDNGTNFVGASNQLKR
FT                 EIEELTHHLASTFTNTTTRWSFNPPGAPHMGGAWERMVRSVKVAIEGILEA
FT                 QRRPDDEVLETVVIEAEAMINSRPLTYIPLEAADQESLTPNHFLLGSSSGV
FT                 KQVPVLPTDYQSSLRNGWKLAQHLSDGIWRRWIKEYLPVISRRSKWFDEVK
FT                 DLAEGDLVLVVDGAVRNQWIRGIVEKVMQGKDGRVRQALVRTVNGVLRRPI
FT                 VKLALLDVVKGGKPETEQDGLRVG"
XX
SQ   Sequence 6335 BP; 1807 A; 1372 C; 1719 G; 1437 T; 0 other;
     tcctttagaa ttttaacacc gcataagcaa tggcggataa agggaatgac tcgcagatgc        60
     cacgaaattg cgcttcatgc tccaagcccg acgaacacga tgatatggtg gcgtgtgatg       120
     catgccatga atggcatcat tattcatgtg cgcgggtcga tgcaacggtt caagatcgca       180
     gttggaaatg tgcatcctgt gaactcccta atgatccgaa caccaatcaa caccatattg       240
     gtgtgacgga accaaacaag aaaggtgcga aaccgaaagt gccggcagta caaccggaga       300
     gtttagctgt tccgccgaag aagctggtgg cgaagtcttc aaccggcagc aaagtcagcc       360
     gcaagtcgaa gaagggtgag gctagtacta catcgagtgc ccggattcga ctggaattgg       420
     agctaaaggc cgttgaagaa caacagcgaa taagagaaga agaactggca gcggagaaag       480
     aacttcagga cctcgaacgg aagcttgagg aggaattgcg ggaaaaggag ttggcgatcg       540
     aagcgaaaag gatcactgat gccaaggccg ctctaaagaa gaagatggaa gtggaacgcg       600
     aatacaggaa acagcagatg gcgataagaa ggcagtcaga ggaggagaag gtaaagttaa       660
     tccggcaggc atccgagtat ggcagtggca gaggtagttc gatcggtacg gataccggtt       720
     ccaaggataa ggtggaggat tggctaaaga aatcgacgca gcagacagcg ggacaatcaa       780
     cagagttcac gtcagcagtc gaccctagta atggtccgaa gcaggtattt gtcgaacaaa       840
     aaactaacca tcaagctaca atcaatatta gggacgatag gagcttagac caacaccctc       900
     taaccacgcc caataaagtt gtctccccct cgcattttct ccccacaaaa cctgtagtcg       960
     atcagaaaac tgtagtacag caagctcgca cgaatgattt cgctgagcga catttcgttg      1020
     acgagtttga aaagctgggt atgggagaaa cctccggaac cagagtcata actggtaata      1080
     aaaacctgaa acttttagtg agtggtgttg actgcatcga tcgtttcgtg tctcgtgatc      1140
     ttccaagcgt tcgtggaaga cgggaaagtg aaagtcgttt gtccaacgct ggcggaagat      1200
     tcttatccac tggagatgac agcgaacatc atagcgtgga agtgcatccg aacgcttctg      1260
     gaataggaca gaatatacgt gcccctattc gagtttcaac agatcaacgt gaagcaggat      1320
     tcggtgtgag gagtgagcaa ccggtcccga gaagtgttgc gcctgtcaat caagagcgct      1380
     acagcgagga ctacctggat ggcccgacaa atcgacaact ggctgccaga caggtgatgg      1440
     gtaaggattt gcccatgttt tcaggcaatc ctgaggaatg gccgatttgg attagcaact      1500
     ttcgtcggtc aacttccact tgcgggtttt cggacgatga aaacttaatt cgactccaac      1560
     gctgtttgaa ggggtcagct ctcgaatctg ttcgttgtag actgctctgc ccggcaagcg      1620
     ttccacacgt tatccgtacc ttggagatgc gttacggtag accggagact ctcatccgtt      1680
     ctatgacgga acgcgtccgt cgactgccgt ctttaaggat aaatgaattg gatgggatta      1740
     tcgaatttgg tttagtagtc gataatttgg tgcaacatct gaagaacgcc ggacagcaag      1800
     cacatcttac caatccatcg ttattacatg atctggttgg taagctgcct gtcgattaca      1860
     agctcaagtg gtcagcctac aaaagcatgc gccataacgt ggatttaagt acatttggag      1920
     agttcatgtc cactttagta gaacttgcct acgatgtagc ggacgatttt cctagtaacg      1980
     agaaggttca gaagcagaag tcaaaggagc gtgtatttgt gcagacacat acggaaactg      2040
     cggtggccct tgaaagtgaa tcagataaca gcagtttggg tgcccggacc tcgaagaaac      2100
     catgcacatt ttgcaaagtg gaaggacatc gggtggcgga atgcagccga ttcaaatcga      2160
     tggacgttag tggaagatta aacgtggtgc agcaaagcgg tgtatgccga tcgtgtttaa      2220
     atttccatgg caaatggccg tgtaaaacgg cgaaagaatg cggagtcaat gattgccggc      2280
     tgaagcatca tccgctatta cattctccgt catcagtggc tccggcggta gtgtcaacaa      2340
     gtcatttgag cgagccgtta gtgagtgagg gacccctgtt caggattatt cctgtcactt      2400
     tgtacggaaa gaattgtaag atgaacgtct atgccttcgt ggatgaagga tcgaagatca      2460
     cgctgctgga agactccgtg gcagatcagc ttgggttggc aggaccaacg gaaccgctaa      2520
     atttgcagtg gaccggaaac attaagcgca gtgagccaaa atcaagaaga atcagtgcat      2580
     acatagctgc acaggattcg ccgaaacagt atcaactctc caacgctcgt acagtaggtg      2640
     gtctgctgct tccgtcacag acggttaatt acgaggagat gtgtagtcgg tacgcacatc      2700
     ttcgtggctt accaatacgc agttacgaaa aggtgtcgcc aaagctcttg attggtcttg      2760
     acaacttgaa gctcactgtg ccgctgaaag ttagagaagg aaagtgggta gaaccgatag      2820
     ccgcaaagag ccgcatcgga tggagcatct acggatgcgc gacggcacca acctcgaccg      2880
     tcgtatgtgg gcttcatttt ggaggatgga ccgatcaaga gcaagaactt aatcaattag      2940
     ttcgtgacta catcaccctc gataatatag gtgttatgcc tccaacaacc cacttggaat      3000
     ctgaagagga taagcgggca agaatgttgc tgcaaacaac tactaggaga atcggcaaat      3060
     cttttgagac gggattactg tggaaaacag atgatgtaca gtttccgaac agctatggta      3120
     tggcattcaa acgcatgtgt tctctggaaa ggcggttgaa tcaagattta acgttgtatg      3180
     aacgtgttag acagcaagta cgagattatg aggaaaagca atatgcacac aaggcgactc      3240
     atcacgagtt atccacaaca aacgctgacc agtgctggta cttgccactg ggtatagtcc      3300
     tgaatccgaa gaaaccgaac aagctgagga tgatttggga cgcggcggcc aaggtcgatg      3360
     gagtttccct gaatactgct ctgttaaaag ggccagactt cttgacatct ctcccatcag      3420
     tcattgcaaa gtttcggttg tatcggtatg ccttaaccgg agacatcaag gagatgtttc      3480
     accgattctt catccgccct caagatcgtc agttccagag attcttgttc agggatcatc      3540
     cagaaacaga gccggtgacc tacgttatgg atgtagccat cttcggagca gcttgttccc      3600
     cgagcagcgc ccaatatatt aagaacttga atgccaagga gtttgaaatg tcgtatccgc      3660
     gagcagcaga agccatcatc catcgtcatt acgttgatga ctatctggac agttttggaa      3720
     ccgtcgaaga tgcggtgaag atcggacggc aggtgaagaa tatccacgct gaaggaggtt      3780
     ttgagatccg aaactttttg tccaatgatc cgacgatagc cgcacgagtc ggcgacgaat      3840
     cgcttgaggc agagaagaac atcggtgagg ataaacacga acgagtcgaa tccgtactgg      3900
     gcatgaagtg gatgcctaac agtgacatat tcacattcac cgttgctttg cgagacaatc      3960
     tactgcacgt tctggaggag tcccatattc caacaaaacg ggaagtcttg cgtacagtca      4020
     tgagcttctt cgatccgatg ggactgattg cgttcttttt gatacatggc cgtactatca      4080
     tgcaggacat atgggcttcc ggcataggat gggatgatcc gatcaccgac caaatctgga      4140
     tgcagtggaa ggagtggatt ggacttatcc caaaattgaa tacacttcaa atacctcggt      4200
     gttacctcag tgaagcaaca gagagtagct attccaagtt gcaggtccat gtgtttgtgg      4260
     atgcaagcca ggctgcgtac gcatgtgcag tatatttcag agttgaaaca cccgaaggcc      4320
     ctgaagttag ccttgttgca gcaaaatcga aagtagcacc gctaaaactg ctgacgattc      4380
     ctcggctcga gctccaggct gcagttctag gatcacgtct gctcaacaat gtaatagcca      4440
     tgcacaatct cccggtgatg aaacgtgttt tgtggtccga ttcaaatacc gttctcgctt      4500
     ggattcgatc agatcagagg cggtaccatc aatatgtggg attcaggata ggtgaaatac      4560
     tctcaatgac ggatgtcaac gagtggcgga aagtacccac aaaagaaaat gtagcggatg      4620
     acgcaaccaa atggggaacc ggaccggatg ttaaatcaga gagtcgatgg tttcgaggac      4680
     cagcgtttct taaaaagccg gaagcctcat ggccaggaag agatgatcag atcgacacta      4740
     cggaggaaga gctggtgatg tgtaaccttc atgaggaatt aagaccgtca ctggtggatg      4800
     tcgaaaggtt cagtaaatgg gagaaactac atcgtaccat gacatacgta catcgattca      4860
     tcgaaaacat ccgacgatca caacgaaacg aggagcgtat actgggagcc ttgacgcacg      4920
     aagagttggt ggctgccgag agatcgttgt ggattcaagc acaagccgag tgctttgcat      4980
     cggaactaca gcaggtaaag aagacgaagg ggaggcctta tgatgttcat ggcgcgcttt      5040
     caaaatccag caaaatatac aagcaatgcc cgttcatgga tgagactggc gttatgcgaa      5100
     aacgaagccg ccttgaaaat gctgattgga taccgtattg caccaaatat ccagtaatcc      5160
     taccccacca acatcgaatt actcttcttc tcgtcgacta ctttcaccgt cgtcttcgac      5220
     accgcaaccg cgaaacggtt gtcaacgaga tgcgacagct ctacgagatt tcgagactta      5280
     ggtcactaac gtacaaagtg acgaatgact gcatggcttg taaaattcgt cgtgcgtcac      5340
     ctagttcgcc tcttatggcg ccgctaccga aggtcagagt gagcccctac gtgcggccgt      5400
     ttaccttcgt aggtgtagac tattttggac cagtgctggt gaaagtaggg cgcagcaatg      5460
     tcaagcggtg gatagctctt ttcacttgct tgacaattcg tgcggtacat cttgaagttg      5520
     tacatagctt gtccaaggaa tcatgcgtga tggccgtgag aagattcgtg tcgcggcgtg      5580
     gagcaccagc agaaatcttt agcgacaacg gcaccaactt tgttggtgca agcaatcagt      5640
     tgaagcggga gatcgaagag ttaactcacc atttagcgtc aacattcacc aacaccacaa      5700
     cccgttggtc gttcaaccca ccgggagcac ctcatatggg aggagcgtgg gagagaatgg      5760
     tccgatcagt caaggtcgct atcgagggca ttttagaagc gcagagacga ccggacgatg      5820
     aagttttgga gaccgtggtc atagaggcgg aggcaatgat caattcacgg ccgctgacat      5880
     acataccatt ggaggcggct gaccaggagt ctctaactcc taatcacttc ctgttaggaa      5940
     gttcaagcgg agtgaaacag gtgccggtgc tgccaacgga ttaccaatcg tcgttgagga      6000
     acggatggaa attagcgcaa catttgtcgg atgggatatg gagaaggtgg atcaaagaat      6060
     acttgccggt gatatcgaga agatcaaaat ggttcgatga agtaaaggat cttgcggaag      6120
     gcgatcttgt gttggtcgtt gacggcgcgg tgcggaatca atggataaga ggaatagtgg      6180
     agaaagtcat gcaaggtaaa gatgggcgag tgcgacaagc actggtacgg acagtgaatg      6240
     gtgtacttcg gagaccaatt gtgaagttgg cgttactcga cgtcgttaaa ggaggtaaac      6300
     cggaaactga acaagatggt ttacgggtgg gggga                                 6335
//
ID   BEL-817_AA-LTR repbase;    DNA;    INV; 499 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-817_AA-I;
KW   BEL-817_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-499
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-499
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2034-2034 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 499 BP; 197 A; 83 C; 82 G; 137 T; 0 other;
     tgtgacgacg aagatccctc ggcgcgtacg tacctaaatt atcacagggc gcatacgaat        60
     atcgagagga aatgtcaaag aacagaaacc tgtcagaaag ggcaaaacat cacgatcgat       120
     tacgttgcag atttgtgaga gattcaatct tagtggtaga tttaaaaaga aatttcttga       180
     tttctaaaat ttcttaaagc tagtattcaa tttgaagttg agtgaatttg aacctaaatg       240
     taagtgtaaa actgaacata tataaaaacc tattacttac ctaatatgaa tttgtaaatc       300
     tagttacgac acatcaaaca catactacta gctaaatttg taaaactaaa ggattagtac       360
     ggaggaactg ttaaaattgt aagtaaactt gttatccaaa aacatacagc aattataaaa       420
     taaattaatt acagctaaag ctgtcccaac caacttcgag ttttacccac gggacttcta       480
     aaagaaaaca gttacaaca                                                    499
//
ID   BEL-818_AA-I repbase;    DNA;    INV; 5667 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-818_;
KW   BEL-818_AA-I; BEL-818_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5667
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5667
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(10..4971,4889..5635)
FT                 /product="BEL-818_AA-I_1p"
FT                 /translation="MSKGSNLPLPDPNETAYNCGKCNRPDEDESQMVFCDN
FT                 CQRWYHFGCQGVTSEVQNDHEWVCKACTDDHDGETTDDPEEKELLEAEKSI
FT                 ALERERLSALIERKKRVAGMKLALEMEKREALWKLEKQELEAKALAVEEFN
FT                 RKKRQEKELLQRRIDKALSERAELEKEESSIRFCKKTSTPTAEEVIEKSSK
FT                 VNVNSARAKVVETDLTTESEGEDESDGDTSCASERVEVVPTKAQLSARQFL
FT                 ARRLPTFSGHPEEWSVFISSYETTTKACGFSNLENLVRLQECLKGAALEAV
FT                 GSRLLLPQFVPKVIQELREQFGQPEQILETLLVKVRSTEGPKAEKPASFIT
FT                 YGRLVQQLCDHMEASQLEDHLINPLLISELAKKLPPSTKMDWIRYKRSEVS
FT                 GKKKVTLRTMADFLSEIVSVATEAVNLIDGNSSSRTPNPERQRERSKSKQQ
FT                 GVFVNIHNEDEKVLQQEDEPQKRIPCAMCGETNHRLRNCDDFLKLDPAQRL
FT                 KAVDRWEFCRSCLNAHGDAKCKINIRCKVANCRGLHNTLLHQLPVHSACNT
FT                 HISIVPTPVIFRVVPVVVYNGSKSLNILAFLDEGSSYTLIEASVAEELGCD
FT                 GVNQPLRVSWTAGMTRQERESKIVNLLVSSLNSPQKTEMCGVHTVRELGLP
FT                 KQTMRFAEFANSYQHLQGLEVADYPMEAPRILIGLKHLHLFAPLESRIGNP
FT                 GEPIAVRSTLGWIVYGPQETSQPMSTFVGHHTYVDVSNEDLYRLLKSHYAL
FT                 EDSAVLVDVVPESNDDRRAREILEKTTVRIGNRFQCGLLWKEEHTRFPDSF
FT                 AMAEKRMKSLEKRLAKNKDLQQNVYKQMIEYLEKVYCHKATQQELQSTERH
FT                 KVWYLPLNIVLNPKKPGKVRLVWDAAATVQGVSLNSTLLKGPDLLVSLPSV
FT                 ISHFRERKIGFGGDIREMFHQVRIRPQDRQAQRFLFQGEVYVMDCAIFGAT
FT                 CSPSQALYVMHKNARECSNNCPEAADAIEKKHYVDDYFDSVDSIEEAVKRA
FT                 KEVREVHSYGGFEIRNWVSNSEEVLTQLGELQANQEIHFHRDKTTEYERVL
FT                 GIVWNTRQDVFKFSTKVKDELQPFLTGGHRPSKRIVLSCVMSFFDPLGLLA
FT                 VFTIHGRIIVQDLWRSGCDWDEVINDEAMEKWTRWTACLKEVEAVKIPRYY
FT                 FSGGNCLDYGTLQLHIFVDASENAYGGVGYFRILAGGIPCCTLVQARSKVA
FT                 PIKPHSIPRLELMAAVLGARLKDSILECHDFEIKKVYFWTDSRTVRSWIKS
FT                 DARKYRQFVAFRIGEIISRTKVADWRWIPTRLNVADQLTKWSRESSLEAGS
FT                 TWLDGPAFLRLPENEWPRDQSVEPNDPEEFRAVCLYHNMGATLQLIDPSRI
FT                 SKWNVLVRTVACVIRFVSNLRRKAKGLPIETLRSLTNMNYTKKLVAVRKCL
FT                 QREEFQRAEALLWQQVQGEAFQDEVCILRRMRDNNNDCKVKIEKRSPLYKL
FT                 SPILDENSVVRVEGRTAQAEFLPFEMRFPIILPRGHLITLRLIDHYHRQLG
FT                 HGHRESVVAELMQRFCIPKIRAEVSKVMRNCVWCKVYKCKPMAPRMAPLPV
FT                 QRVTPFLRPFTYTGVDFFGPISVSVGRRSEKRWVALFTCLATRAVHLEIAR
FT                 SLSSASCLMAIRRFVCRRGFPIEFFLGQRHQLCRSQWLSDDSCVDEDFQLN
FT                 FFSDNGTNFVGASKEIYKAISEECSENLTNARTRWNFNPPAAPHMGGVWER
FT                 LVRSVKEALKELEDGRSLSDEVLETVLVEAEGMINSRPLTFVSKNNAESEA
FT                 LTPNHFLLGYPSCGREMRLPSGNEAKALRDQYERSQVLAEKLWSRWVREYL
FT                 PTINLRSKWQEERGTVNVGTLVYMADEDNRKNWIRGVVDETIKGVDGRIRQ
FT                 VVVRAGGKLYKRAVAKVAVPEISDGTSGIL"
XX
SQ   Sequence 5667 BP; 1672 A; 1112 C; 1529 G; 1354 T; 0 other;
     ttctcaaaaa tgagtaaagg atcaaatctt cccctgcccg atccgaatga gacggcctac        60
     aactgtggca agtgcaaccg gccggatgaa gacgaaagcc agatggtgtt ctgcgacaac       120
     tgccagcggt ggtatcattt tggctgccaa ggtgttacat cagaagtgca gaacgatcac       180
     gaatgggtat gtaaagcttg caccgatgat catgatggag agaccaccga cgacccagag       240
     gaaaaagagc tgttagaagc ggaaaagtcc atcgcacttg agcgggagcg gttgtccgcc       300
     ctaatagaga gaaagaagcg ggtggcaggt atgaaattag cgctagagat ggaaaaaagg       360
     gaagcattgt ggaagttgga gaaacaagag ttagaagcta aagcattagc agtagaagag       420
     ttcaatagaa agaagaggca agagaaggaa ctactacagc gtagaataga taaggccctg       480
     tcagaacgcg cggagttaga aaaggaggaa agctcgatac gtttttgcaa gaaaacttct       540
     actccaacgg cagaagaagt aatcgaaaag tcttcgaaag tcaacgtgaa ttcggctcgc       600
     gcgaaagttg ttgaaaccga tttgacaaca gaaagtgaag gtgaagatga aagtgatggt       660
     gacaccagct gtgccagtga aagagtggaa gtagtgccaa ctaaagcaca gctgtctgcg       720
     cgacagtttt tggctcgacg gctgccgacg tttagtggac atccggaaga gtggtcggtt       780
     ttcatttcca gctacgagac gacaacgaaa gcgtgtgggt tctccaatct ggagaatttg       840
     gttcgactac aggaatgtct taaaggagct gcacttgaag cagtaggatc gcgacttcta       900
     ctgcctcagt ttgttccgaa ggtaatccaa gagcttcgcg agcagtttgg acaacccgag       960
     caaattttgg agaccctgct agtgaaagtg agatcaactg aaggaccaaa agcggagaaa      1020
     ccagcgtcgt ttatcacata cggtcgcctt gttcagcagc tttgtgacca catggaagca      1080
     tctcagttgg aagaccacct gattaatccc ttattgatca gcgagttggc gaaaaagctt      1140
     cctccgagca caaaaatgga ctggatccgt tacaagcgaa gtgaagtaag tggaaagaag      1200
     aaagtcacgc tacgtactat ggcagatttc ctttcggaga tagtttcagt ggcaacagag      1260
     gcggtaaatt tgatagatgg gaactcaagt agtcgcacgc ccaatccgga gcgtcagcga      1320
     gagcgaagta agtcgaagca acaaggagtg ttcgtaaaca tccacaacga agatgaaaag      1380
     gtattgcaac aggaggacga gccgcaaaag cgaattccgt gcgcgatgtg tggtgaaacg      1440
     aatcacagac tgcgaaactg tgatgatttt ttgaaacttg atccagcaca gcgtttgaaa      1500
     gcagtagaca gatgggagtt ttgcagaagt tgcctcaatg cgcatggaga tgcgaagtgc      1560
     aagatcaata tccgctgtaa agtagcaaac tgccgtggct tgcacaatac actcttgcat      1620
     caactacccg tgcattctgc atgtaataca catatcagca ttgttccaac tccggtgatc      1680
     ttccgtgttg ttccagtagt ggtgtacaat ggttccaaat cacttaacat actagcgttt      1740
     ctggatgaag gatcatcgta cacactaatt gaagcttctg tagcagaaga attgggctgc      1800
     gatggagtta atcaaccatt acgagtgtcg tggacggcag gaatgaccag gcaagaaaga      1860
     gagtcgaaga tagtaaattt gttggtatcg agtttgaatt cccctcagaa aactgaaatg      1920
     tgtggcgtac atacggtaag ggagttggga cttccgaagc agacaatgcg gtttgctgaa      1980
     ttcgccaaca gttatcaaca tttacaaggc ctagaggtag cggattatcc tatggaagca      2040
     ccacgtattt tgattgggct caaacatttg catctgtttg ctccattaga gtctcgaatt      2100
     gggaatccag gtgagcctat agcggtgaga tcaaccctgg gatggatagt gtatggtcct      2160
     caggagacat ctcagccgat gtccactttc gtcggtcacc acacatatgt tgatgtgtct      2220
     aacgaagact tgtatcgcct tctaaaatcg cattatgcat tagaagattc ggcagtgctg      2280
     gtggacgtgg taccagagtc taacgatgat cgcagagcca gagagatatt ggagaagaca      2340
     acggtgcgga tcggcaatcg atttcaatgt ggtttgttat ggaaggagga acatactcga      2400
     tttccggata gctttgctat ggcagaaaaa cgtatgaaga gcctcgagaa acgactagca      2460
     aaaaacaagg atttacagca gaacgtatac aagcagatga tagaatattt ggagaaagta      2520
     tattgccaca aagctacaca acaggagctt caatcgacag agcgtcacaa agtgtggtat      2580
     ttaccgttga atatcgtatt gaacccgaag aaacctggca aggtgcggtt agtttgggat      2640
     gcagctgcga cagttcaagg tgtttctctc aattcaacat tgcttaaggg cccagacctt      2700
     ctcgtttcct tgccgtcagt gataagccat ttccgagaac ggaaaattgg attcggtggt      2760
     gacattcgcg agatgttcca ccaggtacga attcgcccac aggatcggca agcacagcgg      2820
     tttctatttc aaggtgaagt gtacgtgatg gactgtgcaa tttttggggc gacctgctcg      2880
     cctagtcaag cactttatgt tatgcacaag aatgcaagag aatgttcgaa taattgtccg      2940
     gaagcagcgg acgcgataga gaagaagcat tatgttgacg attatttcga tagtgtcgat      3000
     tctatagagg aagcagtgaa gcgtgccaaa gaagtacgag aagttcattc ttatggtggt      3060
     ttcgaaatca gaaactgggt ttccaactca gaagaagtgc tgacacaact tggagagcta      3120
     caggcaaatc aagagatcca ttttcatcgt gataaaacaa cggaatacga gcgtgtattg      3180
     ggcattgtat ggaatacgag acaggacgtg tttaaattct ccacaaaagt gaaagacgag      3240
     ttgcagccat tcttaactgg cggacatcga ccttcgaaaa ggattgtatt gagttgtgta      3300
     atgagtttct tcgatcctct tgggctgctt gccgtattca cgatccatgg tcggatcatt      3360
     gtccaagatc tctggcgcag cggttgcgat tgggatgaag ttattaacga cgaagcgatg      3420
     gaaaagtgga cgcgttggac cgcgtgcttg aaggaggttg aagcagttaa aattcctcga      3480
     tactacttca gcggtggcaa ctgtcttgat tatggaacat tgcaactcca catttttgtc      3540
     gatgctagtg agaacgcgta tggaggagtt ggctacttcc ggatactggc tggtgggatt      3600
     ccctgttgta ccctagttca agcccgttcc aaagtcgccc caataaaacc gcattccatt      3660
     ccccgtttag aattgatggc agcagtattg ggtgctcggt tgaaagactc aattctagag      3720
     tgccatgatt ttgaaatcaa aaaggtttat ttttggactg attcgcgaac cgtgcgatca      3780
     tggatcaagt cagacgcacg caaatatcgg caatttgtgg cgttcagaat tggcgaaatc      3840
     atatcgcgaa cgaaggtagc cgattggaga tggattccta cgaggctcaa tgtagcagat      3900
     cagctgacga agtggtcaag agaatcttct ctggaggcgg gcagtacgtg gttagacgga      3960
     ccggcgtttc tacgtttacc cgaaaatgag tggcctcgtg atcagagcgt agagcccaac      4020
     gatccagaag agtttcgagc ggtgtgtctg taccataata tgggagcaac attacaactg      4080
     atagatccat ccagaatatc gaaatggaac gttttagtaa gaacagtggc atgcgtaatt      4140
     agatttgtat caaaccttcg aagaaaggca aaaggcctgc caatcgaaac gcttcgttcg      4200
     ttaactaata tgaactacac gaagaagcta gttgcggtac gaaagtgtct acagagggaa      4260
     gagttccagc gtgcagaagc gttgttgtgg caacaagttc agggtgaagc gtttcaagat      4320
     gaagtctgta tattgcgtcg tatgcgagac aacaacaacg attgcaaggt taaaatagag      4380
     aaaaggagtc cgttgtataa gttgtcgccg attttggatg aaaatagtgt tgtacgcgtg      4440
     gaaggtcgaa ccgcacaggc agaatttcta ccttttgaga tgaggttccc tataatactg      4500
     cccagaggac atttgatcac gttacgccta atagatcatt atcatcggca gcttggccat      4560
     ggacatcggg aatccgttgt agccgaactc atgcaaagat tttgtatccc gaaaatacgt      4620
     gctgaagttt cgaaagtgat gcgcaactgt gtatggtgta aggtgtacaa atgtaaacca      4680
     atggcaccca ggatggcacc actacctgtg caacgagtaa caccatttct tcgtcctttc      4740
     acatacactg gcgttgattt cttcgggcct atttcggtct ctgtaggccg acgaagtgag      4800
     aagcgatggg tagcgttgtt tacgtgcctt gcgacgagag cggtacatct agagattgcc      4860
     aggagtttat cctcagcatc ttgcttgatg gctatccgac gattcgtgtg tcgacgagga      4920
     tttccaattg aattttttct cggacaacgg caccaacttt gtcggagcca gtaaggagat      4980
     ttataaggca ataagcgaag aatgcagcga gaacttgacg aatgcgagaa caagatggaa      5040
     tttcaaccca ccggctgctc ctcacatggg aggagtatgg gagcgattag tacgatcggt      5100
     aaaagaggcg ttgaaagagt tagaagatgg acgatcgctt tccgatgaag tattggagac      5160
     agttttggtt gaggccgaag gaatgatcaa ctcaagacct ttgacattcg tgtcgaagaa      5220
     taatgcagaa tcggaagccc tgaccccaaa tcatttcctg ctcggatatc cgtcatgcgg      5280
     tagagaaatg cggttgccat ccggcaacga agcgaaagcg ttacgggatc aatacgagcg      5340
     gtctcaagta ctcgccgaga agctgtggag tcgatgggta agagaatact taccaacgat      5400
     aaatttaagg tcgaaatggc aagaagagcg aggtacggta aatgttggta ctctagtgta      5460
     catggcagat gaggacaacc ggaagaattg gattcgaggc gtcgttgacg agaccattaa      5520
     gggagtagat ggtagaatca gacaagtagt agttcgagct ggtggaaaac tgtataaacg      5580
     agcagtagcg aaggttgcgg tgcctgagat tagcgacgga acatctggca tcctgtaaag      5640
     aacctgtgcc agagttacgg gaggggc                                          5667
//
ID   BEL-818_AA-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-818_AA-I;
KW   BEL-818_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-493
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-493
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2128-2128 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 493 BP; 181 A; 60 C; 116 G; 136 T; 0 other;
     tgttgcggca catggcaaca ctgcgtggtt gggtggtaga taaaacctgg taggcgaatt        60
     caacgcatca ccaggtgcga atgtcaagca ggaagaatca aaacaaaaat agtgtagtgg       120
     attgaaggat ttagctcggc aattgcaaag aggaatatct attgtgaacc tgaaaagaaa       180
     actaaattgt tgaaaaatat tgaagtgtta gattgttagc acggtaatta gtttgaattg       240
     gatgttgaag gtgaaatgat aagcaagata atatagaaaa tgtatttacg tgaattaaat       300
     gtccagttac agatagcgaa gtgagtgatt gttcgcctga tagaagttcg gatagtggta       360
     gaaaggagca aaaactactc atgtaggtaa tcaatttaat agttattgtt gatatcattt       420
     acaaaataaa aaatttacag ttttgagctg caacaccaga agctgcttca aaaattagtt       480
     tgagatccga aca                                                          493
//
ID   BEL-819_AA-I repbase;    DNA;    INV; 7351 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-819_;
KW   BEL-819_AA-I; BEL-819_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7351
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7351
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2168-2168 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           800..6199
FT                 /product="BEL-819_AA-I_1p"
FT                 /translation="MTNDLRELEKQDRNVRKTLEGMQYFVDHYNPDQVDQV
FT                 AIRLQRLEEIFQEFHAVRRKIELLTDDVFSDDEEDPEKKESKEQRKTRIAS
FT                 MMQKREDENVKIVLRFENAYYKIKAALTRLLPNPTSVAAVPVGQPLQQVAP
FT                 ALSRVKLPEIRLPTFSGHLREWVTFRDTFRSLIHNNAQLSAMDKFTYLRSS
FT                 LTGEALQEINSVELTEANYDVAWVTLERRYENRKLIVKAHLDSLFSVEVMK
FT                 KESYESLSKLIGDFEKNLLMLDKIGENTANWSTILVYMICSRLDSATLRQW
FT                 EAHHKSNAVPTYANLIQFLREHCSVLQSVAPSKIIPVQEKRLKVSVSNSAV
FT                 QSWNKCIFCGESFHTAFRCFKFLKMKVSERIDLARRNKLCLNCFSSGHQTK
FT                 SCTKGCCHHCQQKHHSLLHIESNQQSTPPVKSSVPPQKKPPSPNQQQHQTQ
FT                 SHNSQPTQNQTITPSTSALPVTLSPKTQPLSTTNQTCTSQNSVSLSVSNRI
FT                 GDVLLSTAVVCIKDQYGATRLARALLDSCSQFCFMSTNFSQKLKFRGFPDN
FT                 LSVQGIGGSNSVSRKRVNARVLPRFSDISSYDEDMSFYVLPELTAILPVQR
FT                 VSIGQWKPPFNMTLADPHFYEPGQIDIIIGAEYFYDFLTDGRSKICDEGPT
FT                 LQNTVFGWIVSGRVPTQPAGPSQAVSFSCTLSDIHDQLARFWDLESCKSSS
FT                 IQSVEESTCETIYDETTTRDSNGRFVVSLPKKEFVMQQLGECETIATKRFL
FT                 ALERRLEAHPELKAQYHQFIHEYEQLGHMKQVDSNDPDFAIYYLPHHAVLK
FT                 PDSTTTKLRVVFDASCKTSTGVSLNDALMVGPVVQDDLLAIQLRFRLHRIA
FT                 IVADVEKMYRMILVYPSDQRLQCILWRNSPNEPIRTYQLSTVTYGTACAPY
FT                 LATKCLQRLAELESEKYPEAAKVLKEDFYVDDMLTGADNVEAATQLTNEMI
FT                 ELTSSGGFNLRKWNSNSSELLDQLPSNLVDSRPALELDSANTPVKTLGLLW
FT                 DTTSDCFLFRSPVWESDAIITKRIVLADTARLFDPLGLVGPVVVVAKMFVQ
FT                 ELWKQKCDWDEPLPEAFQSSWIEYRRNLSALSSFAIPRWVAFSTDLASVQV
FT                 HGFCDASNKAYGACLYLRSTTFSGSVEVRLITAKSKVAPLEDLKRKKRVQT
FT                 TPRLELSGALLLSHLYEKFVASTAIQHTAYFWTDSTIVMYWLSSLPSRWQI
FT                 FVANRVSEIQHATKGCPWNHVAGEENPADIISRGMTPAQLQYEKLWFEGPL
FT                 WLSQNSSFWPSKAPEVEIDPAVLEEKKVVALPATAQSVSEIFSLRSSLFSL
FT                 VRLVAGIRRFVHNAQHRNDRRTGFLSYPEHEQALEVLVRLAQREAFPAEVA
FT                 ALNKNNSVSPSSSISRLNPVLINGIMCVGGRLAKAPVSVSRKHPMILSHHH
FT                 PMARLVIHYYHCKHFHSGLQLLVSTVRERFWITRIRSLSNSVMHQCVQCFR
FT                 SRPKVLDQLMADLPSERVSPAPPFLRVGVDYCGPFLIKYPVRRATATKHFV
FT                 AIFVCLVTKAVHFELASDLTSEAFLAAFKRFVARRGKPVLVMCDNATNFVG
FT                 AKRKLDELRQLFIEQTFQDSVVRGTIEDGVEFRFIPARSPNFGGLWEAAVK
FT                 SFKGHFKRTIGDRVLQYDEMITVLPQIEAILNSRPLTPVSNDPADFEALTP
FT                 GHFLVQRPLTAVPEPSLADLQRNRLSMWQQAQDYVQQIWTKWSTQYLSDLH
FT                 NRTKWTRKRDNISVGTLVLLKEDKLPPLKWKLGRVIQIHAGSDGNIRVVTV
FT                 RAQDGEYQRAISKICVLPIRDNSDSAEQI"
XX
SQ   Sequence 7351 BP; 1914 A; 1792 C; 1735 G; 1909 T; 1 other;
     tttttggtcc ttcgaaccgg atttcgggga cttagtgcgt gaaagtgacc gaaaaccagt        60
     gaacaataga tggttgaact atggacacta cggactgaac tttgacctgc tgaagagggt       120
     ccagtgtgtg tgaaaacgag gttcagtgac ctgcatgcga agagcagtga acccaagcgt       180
     tccagtttca gtgtgacgac gacatcagtt tgcagattgg aatacaacag tgtcatccag       240
     cagataggca attgttccag ttttgcctat acaaggtccg cattgcgttg ggctgttgga       300
     gcacgttcat cgttcatctt tctccattgg ctgtgcgatc gagataccta ctgcggacgg       360
     caacaataga tccagactgc taaccgggga agtattattt gcatgatctg tgtgggtttg       420
     tggtggcttg catgatatgc taccgaatac catgtggtaa ttgagtggca ataaaattga       480
     ttaaattata tgcgacattg attcttttgg gattgagccc ctgcatttaa tgcaaatatc       540
     ccccgggtgg aacgattggt cttggaattg atggcatttt tcttcagttg gttgttgtct       600
     gctttggttt gttcgcwcgc tgctgtcaag aattatcgtc gtctgtctgc tatttcgcga       660
     ggtcgcgcgg gacgtcgagt cgattgtggg tgtttcagta aaatcagtgc acagtggaag       720
     tggtaaatta tcagtggcag tggagtgttt aatcattaca ttattcagtg cagtggtgaa       780
     ccatcagtaa tcagtgatca tgactaacga tcttcgtgag ttagagaagc aggaccggaa       840
     cgttcggaag acgttggaag ggatgcagta tttcgtcgat cattacaatc ctgaccaagt       900
     tgaccaagtg gcgatccgac tgcagagatt agaggagatt tttcaagaat tccatgctgt       960
     ccgtcggaag atcgagttgc tgactgatga tgtgttctcc gatgacgaag aagaccccga      1020
     aaagaaggag tccaaggagc aacgtaagac tcgcattgct agtatgatgc agaagcggga      1080
     agacgaaaat gtgaaaatcg ttttgaggtt cgagaacgcc tactataaga ttaaggcggc      1140
     gctcactcga ttgctaccca atccgacttc cgttgccgca gttcctgttg gtcaaccctt      1200
     gcagcaagtt gcaccagcgc tttcaagagt caagctacct gaaatccgat tgccaacctt      1260
     cagtggacac ctgagagaat gggttacctt ccgtgatacg ttccgtagtc tgatacacaa      1320
     caacgcacag ttgtcagcta tggacaagtt tacttatttg cgatcgtcat taaccggaga      1380
     ggctctccaa gaaataaact ctgtggagtt gaccgaagca aactacgacg tggcctgggt      1440
     aacattagag cggaggtatg agaacaggaa attaatcgtg aaggcccatt tggattctct      1500
     attttccgtt gaagtgatga agaaggagag ctacgagtcg ctgagcaaac tcatcggcga      1560
     tttcgaaaag aatctgttga tgctggataa gataggagag aatacggcaa attggagcac      1620
     catactggtg tacatgatct gttcacggtt agattcagcc accctcagac aatgggaggc      1680
     tcaccataag tcgaatgcag ttcctacgta tgcgaacctc atccagttcc ttcgtgagca      1740
     ttgttctgta cttcagtcag ttgcaccgag caaaataatt cctgtccagg agaaacggct      1800
     taaagtaagt gtgagtaact ctgcagttca gtcgtggaat aagtgcatct tctgtggaga      1860
     atcttttcac actgcatttc gttgttttaa gttcctgaag atgaaggttt ccgaacggat      1920
     agatttggct cgacggaata aattatgcct aaactgtttt tcctctgggc atcaaacgaa      1980
     atcgtgcacc aagggctgct gccatcactg ccagcaaaaa caccattccc tgttgcacat      2040
     tgaatccaac caacagtcaa ccccacctgt caaatcctcc gtcccgccgc agaagaaacc      2100
     tccatcgcca aaccagcagc aacaccagac acaatcacac aatagccaac ctacacaaaa      2160
     ccagaccatt acaccctcca caagtgctct ccctgtcaca ctctcgccca aaactcaacc      2220
     actatccacc acaaatcaga catgcacaag ccagaactca gtttctctat cagtcagtaa      2280
     ccgtattgga gatgtccttc tctccaccgc tgtggtctgt attaaagacc agtacggagc      2340
     gacacgacta gccagagccc tgctagattc gtgctcgcaa ttctgcttta tgagcaccaa      2400
     tttcagtcag aagctgaagt ttcgtggctt ccccgataac ttatctgttc aaggaatcgg      2460
     tggttcgaat tcggtatccc gtaaacgagt aaatgctcgt gtccttcccc ggttcagcga      2520
     tatttcgtcc tatgacgagg acatgtcgtt ctacgttcta ccggagttaa ccgctatact      2580
     gccggtccaa agagttagca tcggtcaatg gaaaccacct ttcaacatga cgttggccga      2640
     tccacacttc tacgagcctg ggcagatcga catcatcatt ggtgccgaat atttctatga      2700
     ttttcttacc gatggacgaa gcaaaatctg cgatgaggga ccaacacttc aaaacactgt      2760
     cttcggttgg atcgtctcag ggcgtgttcc aactcaacct gcgggtccgt cgcaagcagt      2820
     ttcgttttcg tgtacgctat cagatattca cgatcagtta gcacgtttct gggatctaga      2880
     atcctgtaaa tcatccagca tccagtcggt agaagaatca acctgtgaaa ccatctacga      2940
     cgagacaaca actcgggaca gcaatggcag attcgtagtg tcgttgccta aaaaggaatt      3000
     cgtcatgcag cagcttggag aatgtgaaac aattgccact aaacgtttct tagccttgga      3060
     acgacgacta gaagcccacc ccgagttgaa ggctcaatac caccagttca tccacgaata      3120
     tgagcagctt ggccatatga agcaagttga ctccaatgat ccagattttg ccatctacta      3180
     ccttccgcac cacgcagtac taaagccaga cagtaccacc acaaaactcc gtgttgtgtt      3240
     cgacgcgtcc tgtaaaacct caacgggtgt ctcgttaaac gatgctctga tggttggacc      3300
     agtcgtgcag gatgacctcc tggcgattca actgcgattt cgtctccacc gaatagccat      3360
     cgttgcagac gtagaaaaaa tgtatcggat gattctggtt tatccgtcag atcaacgact      3420
     ccaatgcatt ctatggagga attctccaaa cgaacccatt cgcacctacc agttgtcaac      3480
     agttacgtac ggcacagctt gtgcaccgta cttggccacc aagtgtctgc aaagactggc      3540
     tgagctggag tccgagaagt atcccgaggc agcgaaggta ttgaaagaag acttttatgt      3600
     cgacgatatg ctaaccggag ctgataacgt tgaagccgct actcagttga cgaacgaaat      3660
     gatcgagctt acctcttccg gtgggttcaa tttacgaaaa tggaattcca actccagtga      3720
     gcttcttgat cagttaccat cgaatctcgt cgacagtcgg ccggccttag agctcgattc      3780
     agcaaatact cctgtgaaga cactgggatt gctctgggat accacttcag actgttttct      3840
     cttccgttca cctgtatggg aatcagatgc gatcatcacc aagcggattg tgcttgcaga      3900
     cacagctcgt ttgttcgatc ctctaggcct ggtgggacca gttgtcgtgg tagcaaaaat      3960
     gttcgtgcaa gagctgtgga agcaaaaatg cgactgggat gaaccgttgc ccgaagcgtt      4020
     ccagagttcc tggattgaat ataggagaaa tctttccgcc ctttcgtcgt ttgcgattcc      4080
     tcggtgggtg gcgttcagta cggatctagc ttccgttcaa gttcatggct tctgtgatgc      4140
     ttcaaataaa gcgtatggag cgtgcctcta cctccgcagc accactttca gcggttcagt      4200
     ggaagtgcgt ctcatcacag ccaaatccaa agtcgcacca ctagaagatc tgaagcggaa      4260
     gaaaagggtt cagaccactc cccggttgga attgtctggc gcattgctac tcagtcatct      4320
     ttatgaaaag ttcgttgcca gcactgcaat tcagcacaca gcctatttct ggaccgattc      4380
     cacgatcgtt atgtactggc tttcatcact gccatcacgg tggcagatat tcgttgcaaa      4440
     tcgtgtatcg gagatccagc acgccacaaa aggatgtcct tggaaccacg tagccggaga      4500
     agaaaatcct gccgatatta tctcgcgagg aatgacaccg gcacagctgc agtacgaaaa      4560
     gttatggttc gagggaccgt tgtggcttag tcaaaattca agcttttggc catcgaaagc      4620
     gccagaagtt gaaatcgatc ctgcagtctt ggaggagaaa aaggtcgttg cgcttccagc      4680
     gacagctcaa tcagtcagtg aaatattcag tctccgttca tcgttgttca gtttggtcag      4740
     attagttgct ggaattcgcc gatttgtgca taacgcacag cacagaaatg accgtcgaac      4800
     agggttccta tcgtaccccg aacacgagca agcattagaa gtcctggtac gattagcgca      4860
     acgtgaagct ttccctgccg aagtagctgc tttgaacaaa aataattctg tcagcccgtc      4920
     atcttcgata agcagattga atccagttct catcaatggt atcatgtgtg taggtggtcg      4980
     attagcaaag gcgccagtgt cagtcagtcg gaaacatccg atgattttga gccaccatca      5040
     tccgatggca agattggtca tacactacta ccattgcaaa catttccatt ctggactgca      5100
     gttgcttgta tccaccgtac gcgagcggtt ttggattact cgcatcagaa gtctgtccaa      5160
     ttccgtcatg caccaatgcg ttcaatgctt tcgaagccgg ccaaaggtct tagatcaact      5220
     aatggccgac cttccctcgg aacgagtttc tcctgcacct ccattcctaa gagtaggagt      5280
     ggattattgt ggaccgttcc tgataaagta tcccgttcgt cgtgctactg ccacaaaaca      5340
     tttcgtcgcc atttttgtct gcctggtcac gaaggccgtt cattttgagc tggctagcga      5400
     tttaactagc gaagcgttcc ttgctgcctt caaaagattc gtggctcgca gaggaaaacc      5460
     agttctcgtc atgtgcgaca acgccacaaa tttcgtggga gccaagcgta aactggatga      5520
     gttacgacag ctgttcatcg aacaaacgtt ccaggattca gtcgtccgag gaacgatcga      5580
     ggatggcgta gagtttcgct tcattccggc aagatctccc aacttcggtg gcctgtggga      5640
     ggccgcagtg aagtccttca agggtcattt caagcgtacc atcggcgatc gagtgctcca      5700
     gtacgacgag atgatcacag tgttgccaca aatcgaagcg attctcaact cgcgaccact      5760
     tacgccagtt agcaacgatc ctgcagactt cgaagcgtta accccaggtc acttcttggt      5820
     tcagcgacca ttaacagccg ttcccgagcc gtcgttggca gacctccagc gaaatcgact      5880
     ttcaatgtgg caacaagcgc aagactacgt tcagcagatt tggaccaaat ggtccactca      5940
     gtatctgtcc gatctccata accggactaa atggacccgt aaaagggaca atatctctgt      6000
     tgggactctc gtcctactca aagaagacaa gcttccacct ttaaaatgga aacttggtcg      6060
     tgtcattcag atccacgctg ggtcagatgg taacatacgc gttgttactg tcagagctca      6120
     agatggcgaa tatcaaaggg caatttccaa gatctgtgtc cttccgatac gcgacaattc      6180
     agattctgct gagcagattt aatctacact cttttcgacg actctgtact gcaatttcga      6240
     accactgcca acgctttcca agtaccagta ttccggaaaa ccacttgagg tctaaccatt      6300
     cagtttgttc atcagtcatc agttggtcca tgagtgatca gctacttctg tatcgttttg      6360
     catgtgtgaa gtccacggtg gcgtcctgtc cgtcattatg aaatgttccc gattatgtcg      6420
     caaatttcca tttgccaagg taggaagagg cgttgaaaag atgcgttcat ggtgaaggag      6480
     aatccatggc acctccagat ccgtcgtcga cagccagcat tagttcgtca acgtagaatt      6540
     catcgtcatt gtccatccta ctgaagctcc accaatgttt tcgtcgtgcg accgggacat      6600
     cgtcggtgct ttggcacccg cggaggccag gaggcctccg ctccaggcaa gtcattttat      6660
     gcttgggtta tataggtgaa aaagcaccct ctcatcttac agatagattc cgttcgattg      6720
     cctgtggccg tggactccac catccctcat ctaccattaa catggattcc atcatccgtt      6780
     atcttcatca cctggacatc gtcagcgtat cgacgctcga tcatggatcc gggacatcgt      6840
     tggtgcttcg gcgcccgcgg aggccaggag gcctccgctc cagggaagtc tatttatgtt      6900
     tgggttatat agatgaaaaa gcaccctctc atctttcagg atagctttcc catcatcgag      6960
     ccatggcatt tggccatgga actaccatcg atccgtctgt gggacaaccg tccagcgatt      7020
     cctttcatct gaagctacca caaccgtggt gatcagtcgt gtccagccct caagtgccaa      7080
     attcgtacaa ccgttcatca gttggaactt ggaagcagca gtagtcatca agtcagtatt      7140
     cgtcagcagt cgtcgagtat ccgtagcaga attttcgttc aacatcagta tagttagcga      7200
     acagaagcaa ctagtagtca gcatcgtcat cagattattt cattattgag caaaccagtt      7260
     aagaattaag attaggctta gatttgttga aatttgatta agatgtaagg tcagatttgt      7320
     tgaaatcggt gagattccaa ggtgggcggt a                                     7351
//
ID   BEL-819_AA-LTR repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-819_AA-I;
KW   BEL-819_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-356
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-356
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2035-2035 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 356 BP; 102 A; 88 C; 65 G; 101 T; 0 other;
     tgtttgaacc aatttgaatt gtgacaccct aacgaaccac ataacatacg ttccacaaaa        60
     aagagttaga ttcaacccgc tctcagtatc agtcgttctc tcatcaaccc gaacagatca       120
     gatataggca cacgcgatag aatgtaagtc atcacccgga tagttatctc ccaatcgacc       180
     gtgtgcgtag acctgtatcg ttctcttgcg accgcgtttg aagaaccaat aaattgaatt       240
     cggttataca gtgccggttt gtcctttcca ataaagtgtc gtttaacttc tcaaattcag       300
     tgtcgcgttc agttcaagtt ccgaaatccg gatacagttc gttttccgtc gaaaca           356
//
ID   BEL-81_AA-I repbase;    DNA;    INV; 6736 BP.
XX
AC   supercont1.280;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-81_AA_;
KW   BEL-81_AA-LTR; BEL-81_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6736
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.280; Positions 1395090 1388355.
XX
CC   Positions [5790-6347] - Integrase core
CC   'ATTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3516..6734
FT                 /product="BEL-81_AA-I_3p"
FT                 /translation="MAERRLKCLERRLAKNPQLYDSVRQQVADYESKGYIH
FT                 VVTKEEKAKFDPRRTWYLPLGVVLNPNKPGKVCVIWDAAAKVNGISLNTML
FT                 LKGPDLLTPQLTVTFKFRERQVAFSGDIQEMFLQVGIREQDRSALLFVFRD
FT                 SPSQPIITMASDVAIFGATCSPAQSQFVKNLNAAEHALEYPRAAAAITDRH
FT                 YVDDYLDSVDTEEEAVELALEVAAVHRKAGFHIRNWVSNRPKVLEAIGEAN
FT                 PATVKNLTMNNQSGFERLLGISWLPDEDVFCFKLGLQGDLEELAKGEIAPT
FT                 KRMMHSFLMRIYDPLGLVGSLVIQGKILFQDVWRAQVEWDQQIPEDLFGRW
FT                 KSWILVLKELDNVKIQRCYFQGYDRASLDSMELHIFVDGSAQAYSAVAYFR
FT                 VQDKGLIRCSLVTSKTKVAPLQLLSTPRIELQAAVIGARLRKTIEEGHSIR
FT                 IKRTCFWSDSSTVISWIRSDTRRYRQFVAFRVNEILNLSKVEEWRWLGTKS
FT                 NVADEATKWGRGPNCKPDSRWMNGPAFLYEEESDWPSNELTLSEETTEEVR
FT                 PAFVGSHLIAFPAIDVDRFSKYERLLRSIAFVHHFCYVATQRSRKQLRLQP
FT                 GVLNSEDLRKAERSLWRIAQAEHYPDELAILKRNVDAEPAQRIALDKSSPI
FT                 SKLPPLLDVHGIIRLDSRIAAAEYVSYDTRYPVVLPRQHQVTKLLLDWYHR
FT                 KYQHANNETVVNEVRQKFYIAKLRVEVRLAARRCQWCRVYKVKPIAPKMGP
FT                 LPRIRITPFLRPFTFVGIDYFGPYYVKVGRSSVKRWVALFTCLTVRAIHME
FT                 LAYSLTSDSCKKAIRRFIARRGAPQEIYTDNGTNFVGASRELQNELQAINT
FT                 TMSSTFTDVNTKWRFNPPAAPHMGGCWERMVRSVKTALGALPSARKLDDEE
FT                 LMTLLAEAEHMVNSRPLTFVPLENELQESLTPNHFLMLNSSGVRQAVKAPA
FT                 DARKALRGGWNLIQHMLDTFWQRWIVEYLPIIARRSKWFEDVPPIKEGMLV
FT                 VIADQGSRNEWIRGRVIRTYPGKDGTVRRVDVETPNGVLCRPVNKLAVLDV
FT                 IPDGDAGKDSGRHGGE"
FT   CDS           join(848..1291,1295..2518)
FT                 /product="BEL-81_AA-I_1p"
FT                 /translation="MVNVQQYARLLEESQSVSNLVPTSEQLMTGTNPKIIK
FT                 KITNPTPFEMWHRETCGLRRQRESEILYHGDDERKRYENRLQEIEASLKLQ
FT                 REMEQKHLQENELRRRREMELINRLNRLEDQHAEERKQSKDAECALRKQLE
FT                 ESQLRFQTLAERQQQLASQEEQLRRYREREHHFTQQLESFRLHDQHEQLQS
FT                 VRSQKATMLQTQSAAVPLQQSDVASMGQASYVSNPRKTLVSEAQCNHLEQD
FT                 SCAGFYSGRDTPFSSMSGRAGTYCTYNINQDLGPKHVGHQVQTQFNPYSPP
FT                 ELNGLSSNNFLQGQFEPTRQHLAARQVIPKELPIFSGDPTEWPLFISSYKH
FT                 STISCGYSDSENLLRLQRALKGVAKESVSSFLLHPSTVSQIMSTLQTLYGR
FT                 PEQIVHHMVAKVRATPAPKADRLETLVQFGLVVQNLCGHLKAIGMDSHLSN
FT                 PILLQELVEKLPPNIKFSWALYQEQQPIVNLSTFGDYMAKVTAATSGITNV
FT                 FLTPKHPKDDNPRTKEKAFVNTHSAYEKKFGSTNGIQKGEYQQSANTKNSR
FT                 SEEIRNCPM"
XX
SQ   Sequence 6736 BP; 1986 A; 1453 C; 1732 G; 1565 T; 0 other;
     taatctcaaa gatttattac ggaccgtttg gagaatggag aaatcgttcg tccgtcaaac        60
     tcggtcaaag acgcaggccg ccaatatcga aatatcttct ggacctgtag gccaagatct       120
     ggatctgtcg gaagatgagt ttgtgccatc tataaccgat ttcgagcgcg gagaggacct       180
     cgactgtgcg gtatgcacac gtcccaacaa tgccgagttg tatatggttc aatgcggaag       240
     atgcaagcgt tggcaccatt tcacttgtgc gagagttaat tcgaaggagt tttgctgtgc       300
     gaagtgttca tcgaagcgaa gttcagtacg gtcatttaga tctgtatctg gccggtctag       360
     cgtgacaagc ggtcgcagtt agcacattga ccttgaactc caacgtttgg aagaggaaag       420
     gcgtgctgag gaagaagtag aacgagagcg cttgcggcaa gagaaaattc ttatcgagaa       480
     agccgctaag gaaaagttag accgtgaaaa gcagttcata gctagaaagc atgaactact       540
     ccgtcaaaag gacgaagaaa acggaagtca gttgagccga cgaagtagca gaagcagcat       600
     aaaaaaagtg gaggattggg ttcagcaaca tgtcacttcc gctagtggcc ccaacgacga       660
     taaggtccct gttcagccga taaagcaacc atcggttgta tcgtctacgc cgctgggaag       720
     cagtgaagtc agtaccggtg agcgtcaggc cgtcactacg cagcgagcat cgttacctcg       780
     tacaataggt agcgttacga tcggggatag tccagagcgt accgatgtgg agttcccaaa       840
     gctagaaatg gtgaatgttc aacaatacgc acgactattg gaggagtcac aatccgtttc       900
     aaacctcgtg ccgacttctg agcaattgat gaccggaacc aatccgaaga ttatcaaaaa       960
     gataacaaac cccactccat ttgaaatgtg gcatcgtgaa acttgtggac ttcgacggca      1020
     gcgtgaatca gagattttat accatggcga cgacgagaga aagcggtatg aaaatcgatt      1080
     gcaggaaatc gaagctagct tgaaactcca acgagagatg gaacagaagc acctgcaaga      1140
     aaacgaactg aggcggagac gagaaatgga attgataaat cgactgaatc gtctagaaga      1200
     ccaacatgcg gaagaacgga aacaatctaa agatgcggaa tgtgcgttga ggaagcaact      1260
     ggaggagagt caactccggt ttcaaaccct gtaggcagag cgtcaacagc agctagcctc      1320
     acaagaagaa cagctacgcc ggtatcgaga gcgagagcat cactttactc agcagttgga      1380
     atcgtttcgt ctacacgatc aacacgaaca actacagtcg gttcgatcac aaaaggctac      1440
     gatgttgcag acacaaagtg ccgcagttcc tctccagcaa agtgatgtag cttcgatggg      1500
     acaagctagt tacgtgagta atccgcgaaa aacgttggta agtgaagccc aatgtaatca      1560
     tttggagcaa gattcatgtg caggattcta ctctggtaga gatacaccct tttctagtat      1620
     gtcaggtagg gcaggaacat attgcactta caatataaac caagatctag gaccgaaaca      1680
     tgtagggcac caggttcaga ctcagttcaa tccgtatagt cctccagagt tgaatggtct      1740
     tagtagcaat aattttctgc agggacagtt tgaacctact agacaacatt tagcagctag      1800
     gcaagtgatt ccgaaagagc ttccgatatt ttctggggac cctactgaat ggccactctt      1860
     cattagtagc tacaaacact caacaatttc ttgtggctac tcagattcag aaaatctact      1920
     tcgtctacaa cgggctctga agggtgttgc caaagaatcg gttagtagtt ttctgcttca      1980
     tccgtcaacg gtgtcacaaa ttatgtctac gctacagacg ttgtacggta ggccagaaca      2040
     aatagtgcat catatggttg ccaaggtccg cgcaactcct gctccaaaag cagaccgcct      2100
     cgaaacgttg gtccagtttg gtctagtagt gcaaaacctt tgtgggcatt tgaaagcgat      2160
     tggaatggac agtcaccttt caaatcccat tttgctacag gaacttgtgg agaaacttcc      2220
     gcctaatatc aaattcagct gggccttgta tcaagagcaa caaccgattg tcaacttgag      2280
     tacgtttggc gactacatgg caaaggtaac agccgcaacc agcggaataa ctaacgtatt      2340
     tctgactccg aaacatccga aggacgacaa tccaaggacg aaggaaaagg catttgtgaa      2400
     tacccattca gcatacgaga agaagtttgg atctactaat ggtatccaga aaggagagta      2460
     tcagcaatca gcaaacacga aaaacagcag aagtgaagag ataaggaact gtccgatgtg      2520
     aaaatctcac gaacacgcca ctgaaaagtg taccgagttc aagcaactgt cggttaacga      2580
     gcgctggaag ttcgtgaaag agcagaaact atgtagaaga tgtctcattg cacacactcg      2640
     ctggccttgt gaaggggaaa tctgtggagt gaacgaatgt caaaaacgtc atcatcgact      2700
     gcttcattac gaccccgaat ccgagaaaat gttggtcact gcgaacgcta ccgtcacaat      2760
     ccatcgacaa cccgttgctt cgaccttgtt caaggtacta ccggtaacgc tttatggaag      2820
     aaccgttcgc ttttcttgac gatggctcgt cagctacgct tctggaaaag gcgatagctg      2880
     acaaactagg ggtggacggt aagatgctat ctttatgcat gcagtggacc ggtggaatcg      2940
     ataagaaggt tgctacaact cagatcgcaa atctgggtat ctcggaactc gggagtaata      3000
     tgatgcaaca gttgtccgaa gtctacactg tgaagaatct gggacttccg gaacagacag      3060
     taaactatac cgaattggca aagcagtaca aacatctgcg gcgcttaccg gtaaagagtt      3120
     ttgacagagc taaccctgga ttgctgattg gagtcaataa tattcacctc ctaaccacat      3180
     ctaaagtacg tgaagggaag gaacatgaac cgatcgcagc gaagacacgt atcggatggg      3240
     tagtttgtgg acatttgcgc ggagaagaga accaactcaa acatcgccaa atgcacattt      3300
     gcgcggaatc caccgaactc gatcttcaca attacgttcg agagtttttc tcggtggaaa      3360
     gcataggtgt tgctgttgcg ccaaatcttg aagggacaga agaccaacgt gcccgctgaa      3420
     tcctggaaga aacgaccgtg cgtaagacga atggaaaatt cgagactgga ttgctatgga      3480
     aacaggacga cttcgagttc cctgatagtc gaccaatggc ggaacgccgt ttgaaatgtc      3540
     tcgaacgtcg tttggcgaag aatccacaat tgtatgacag tgtgcgtcaa caggtggcgg      3600
     actatgagtc aaaagggtac atacacgtag tgacaaaaga agagaaggcc aaattcgatc      3660
     cacgccgcac ttggtatttg ccgcttggag tggttttgaa cccgaataaa ccaggaaaag      3720
     tgtgcgtgat ttgggatgcg gcagccaagg tgaatgggat ctcgttgaac acgatgttac      3780
     tcaaaggccc ggatttgttg accccgcagc tgaccgtcac gttcaagttc cgggaacgac      3840
     aagtagcatt ctccggggac atccaggaga tgtttctcca agttgggatt agagagcaag      3900
     atcgtagtgc attactcttc gttttccgtg actccccttc ccagcccatt attacgatgg      3960
     cctctgatgt agctattttc ggagcgacgt gctctccagc acagtcgcaa tttgtgaaga      4020
     atctgaatgc ggcagagcac gccttggagt atccacgagc ggctgcagca attacggaca      4080
     gacattatgt cgatgattat ctcgacagtg tcgacacaga agaggaagct gtcgaattgg      4140
     ctttagaagt agcggcagtt catcgaaagg ccgggttcca cattcgaaat tgggtttcga      4200
     atagacccaa ggttctggag gctattggcg aagcaaatcc agcaacggtg aagaatttaa      4260
     cgatgaataa ccagagtgga tttgaacgtt tgctgggaat atcatggcta cctgatgagg      4320
     acgttttctg cttcaagctc ggcctgcaag gagatctgga agaactggcg aaaggagaaa      4380
     tagcccctac taaacggatg atgcatagtt tccttatgag aatatacgat cccttagggc      4440
     tagtaggttc cctagttatt caaggaaaaa tactttttca ggatgtatgg agagctcaag      4500
     tagagtggga tcaacaaatt ccggaagacc ttttcggacg ttggaaatcg tggatattag      4560
     ttctgaaaga attggacaac gtgaaaatcc aacgctgcta tttccaaggc tacgatcgtg      4620
     cgagtctcga ttcgatggaa ctccatattt tcgttgatgg aagcgcgcaa gcatattccg      4680
     ctgtcgccta ctttcgcgtg caggataaag gactgatacg atgctcatta gttacgtcaa      4740
     aaacaaaggt tgctccatta caattgttgt caaccccccg aattgagcta caagcagctg      4800
     ttatcggcgc acgcctgcgc aaaacaatag aagaaggtca ttctataagg atcaagcgaa      4860
     cttgcttttg gagcgactca agtacagtaa tatcctggat aagatcagac acgcgacgct      4920
     accgacaatt tgtagcattt cgcgtcaacg agattttgaa cttgtcaaaa gttgaggagt      4980
     ggcgatggct gggtacaaag tcaaatgtag cagacgaggc aacgaaatgg ggaagaggtc      5040
     cgaactgtaa accagatagt agatggatga atggaccagc gtttttgtat gaagaggaga      5100
     gtgattggcc gagcaatgag ctgaccttat cggaagaaac aacagaagaa gtacgtccag      5160
     cgtttgtggg tagccatctc attgcctttc ctgctatcga tgtggatcgt ttctccaagt      5220
     atgaacgact attgcgaagc atagcatttg tacatcattt ttgttatgtt gcaacgcaac      5280
     gatcaagaaa acaacttcgc cttcaaccag gagttttaaa cagtgaggat ctacgaaaag      5340
     ccgagcgaag cttgtggcga attgcgcagg cagagcacta tccagatgaa ttggcaatat      5400
     tgaagcgtaa cgtggacgcg gagccagcac agcggatagc gctggataaa agtagtccta      5460
     tttcaaaact accacctctg ctggatgtcc atggaatcat acggctcgat agccgcattg      5520
     cagcagctga gtacgtcagc tacgacacca gataccctgt tgttctgccg aggcaacatc      5580
     aggtaaccaa acttctactt gattggtatc accgcaaata tcaacatgcg aacaacgaaa      5640
     ccgtcgtgaa tgaagtccga cagaagttct atattgccaa gttgcgggtt gaggtacgtt      5700
     tggcagctcg tcgttgccaa tggtgccgag tttataaagt taagccaata gctccaaaga      5760
     tgggaccgct tccgaggatc cggatcaccc cattcctacg gccatttacg tttgtaggta      5820
     tcgattattt tggaccctac tacgtgaaag tcggccgcag ctcagtgaaa cgttgggttg      5880
     ctctttttac ttgtctgact gtccgggcaa tacatatgga gctagcctac agtttgacgt      5940
     cagattcctg caagaaggct atacgtcggt tcatcgctcg tagaggagca ccccaggaga      6000
     tatatacgga caacgggacg aatttcgttg gtgctagtag ggagcttcaa aatgagttgc      6060
     aagcaattaa cactacgatg agcagtacgt tcacggacgt aaacactaaa tggcggttca      6120
     accctccagc agctccccat atgggaggct gttgggagcg catggtgcgc tctgtgaaga      6180
     ctgcattggg cgccttacct tcggcgcgga agctggatga tgaagaactt atgacgctct      6240
     tggctgaagc tgaacacatg gtcaactcac gaccattaac atttgtccca ctagaaaacg      6300
     aattacaaga gtcgttgaca ccaaatcatt ttttgatgtt gaactctagt ggagtacgcc      6360
     aggcagttaa ggctcctgcg gacgctagaa aagctttgag aggtggatgg aatttgatcc      6420
     aacatatgtt agacacattt tggcagcgat ggatcgtcga gtatctgcca attattgcca      6480
     gacgaagtaa atggttcgaa gatgtgccac cgattaagga aggaatgtta gtggtaatag      6540
     cagatcaggg tagccgtaat gaatggatac gaggtcgagt gatccgtaca taccctggta      6600
     aagatggaac agtgcgaaga gtagacgtgg agactcccaa tggagtatta tgcagaccgg      6660
     tcaacaaact tgcggtactg gatgtaattc cagatggtga cgccggaaag gactccgggc      6720
     gccacggggg ggagga                                                      6736
//
ID   BEL-81_AA-LTR repbase;    DNA;    INV; 428 BP.
XX
AC   supercont1.280;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-81_AA_;
KW   BEL-81_AA-I; BEL-81_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-428
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.280; Positions 1388354 1387927.
XX
SQ   Sequence 428 BP; 158 A; 61 C; 81 G; 128 T; 0 other;
     tgttgctggc aacgctgtca ctagagagtc ccccggccag cttacctagt gtgcgtataa        60
     atggtagcac aggaatgtta aatgaactgt caaacacgaa atgtcataac ttcgtaattt       120
     attgagtcat tggatttatg aaatttactt gaatactgtt tattacgtaa gacttacaaa       180
     ataatgaatt tatatgctac aagttgaaat tatttaaatt attgcagaag aaaagcagaa       240
     atagttattg gtagagatat ttgttggtag atttgaattg tgcgaaaact aaagggagaa       300
     taaatgtaag gtaaatgaaa ttccatgtaa acaaaacaat aacctaaaat aaatttacag       360
     ctttgagcta tcttgatcgg gaacgcagac gagttgctac taagatctcc gaaataattt       420
     caccaaca                                                                428
//
ID   BEL-81_CQ-I repbase;    DNA;    INV; 6326 BP.
XX
AC   AAWU01022158;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-81_CQ_;
KW   BEL-81_CQ-LTR; BEL-81_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6326
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 303-303 (2011).
XX
DR   GenBank; AAWU01022158; Positions   13557   19882.
XX
CC   Positions [5144-5746] - Integrase core
CC   'TTATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           833..6151
FT                 /product="BEL-81_CQ-I_2p"
FT                 /translation="MPKKVSYKLKIRNTILASLNRADKFLQNFVLEKHADQ
FT                 VQSRLDAVNQAWAEFEALQLEIETIEEEDLKEEDDATAMEEEHERVREQFE
FT                 GLYHKVRAGLKSRLPSGVASGSSACVARAGIQLPKITLPKFSGEYDEWLPF
FT                 HDTFKSLIHENVDLTAIQKFHYLRDCLIGEARKMINSSEFSAKSYQVVWDL
FT                 LVKRHANKYLQKKRYVNGLLQFPRVKGVSSSSIHDVMDHFSRCTQILDQLG
FT                 EVTGGWGVMLTQLLVSKLDDVTQKEWEALAAKKEDPQFTDVIAFLEERTKV
FT                 LDAVAVDQLLGSQRGSPSVSSVPAAQPKKSFPKLTVNAASDSSSPKCRMCS
FT                 GPHSLSSCSDFKKLSLDGRNRLVLSKRLCRNCLWSGHFVRDCHVRSRCSSC
FT                 SEKHNTLLHPVGRTGSGSTPSAAVTGDSQEGGSRSSTAPAAQPQAVTSSVA
FT                 TIYAANVAAESRKVHVFLSTVLVAVKDCHGRLHTARALLDSGSQANLISER
FT                 LCQILRLPRKKVSVPISGVGSSRMQVDSSVSAIVSSRVTNYTVPMECLVLK
FT                 KVTEDQPSATIPIDQWNLPSDMVLADPGFHKRAPIDLLLGLEFFYEFLLLN
FT                 GGRVQIQRPGEGLPLFVNTVFGWIAAGKTDLGSLNPVPSCHVSVNATLEEK
FT                 IERFWTIEELQEAPKRSQEEQDCEEHFQATFSRDVTGRYVVRLPKRMGFEK
FT                 MVGESRNMAVRRLMQLERRLGKDESLRKRYNEAIQAYLDQDHMKVVSEEEL
FT                 KGDKRLECYLPHHPVFKESSTTTKIRPVFDGSAKTTSNFSLNEALMIGPVL
FT                 QDPLFDLVLRFRKKQVALVADIEKMYLQVKVHPDDTPLQRILWRPSPSEPI
FT                 RTYEMLRVTFGLAPSSYLATRCMQQLAQDEGEVYSRAKEALLRDFYVDDFI
FT                 GGADSEEEALLLRQELEQLLPKGGFRLRKWVSNATGALAGLAADDLGTQTT
FT                 LSFDQEQVKTLGINWQPGPDVLGIDVTGLSVNGQWTRRKVYSVIAQLWDPT
FT                 GITAPVISWAKIRMQLLWVATQGWDDPLRPDLAGRWTEFYQQLPELSKISV
FT                 DRCAFVENPVHVEFHVFADASEAAYGACIYARSISQSGLVKISLLAAKSRP
FT                 AGLKKVTLARLELCAALMAARLYRKVVQALKMEGTESWFWSDSTVVLAWLR
FT                 SPSYVWPTFVANRVSHIQELTKGHRWNHVKGTENPADLVSRGVMPKDLVGL
FT                 RLWFYGPKWLESFEEYWSRVKHLEVDEPAEELLEKRKNVLVVSASPEPHPL
FT                 IDRYGSYWKLLRITAYCVRFVRRCQRRKQPPRTPFLTVGDLKEAKFALVRG
FT                 VQQEPFAAEIKALANHRLVPAHSSLKLLNPFLDQQGILRVGGRLGLAGEAY
FT                 STRHPMILPSSNVFTRQMAVAYHETSLHSGPRMTLAQIRHEFWPLNGKQLA
FT                 TYTFRNCVRCFRTNPAPVKQPPGQLPKPRTTLSRAFTVTGVDYCGPVYLKP
FT                 VHRRAAAQKAYIAVFVCFSTKAVHLELVGDLTTAAFLAALRRFVSRRGLPS
FT                 EIHSDNGLNFQGASNHLRELYELLRDNKVITEITSEASRRGIEWKFIPPRA
FT                 PSFGGLWEAAVKSAKTSLVRVLGQRQLTFEDMATVLTQIEAAMNSRPLTPL
FT                 SEDPDELDVLTPGHFLAGSSLLAIPDPNYTDVPTNRLQHYQQLQQLVQQHW
FT                 KRWRREYISQLHNQNQKFPQATQLKAGQMVVLKEDNKAAIEWPLARIVEVY
FT                 PGPDGVVRVVKLRLPNGAVYKRQSARICLLPFEKDSAVQLTSAFNPQPTQG
FT                 AA"
XX
SQ   Sequence 6326 BP; 1292 A; 1629 C; 1982 G; 1423 T; 0 other;
     ttggtgccgt gaccaggatt ggtacctcgg gtggcccatc gaacgccatc gcgatcatct        60
     gcgcgtcgaa cgagttcgcc atcgctgctg cggagaaagt tcgcggccat cgcgattgtt       120
     ttggtttggc gctcagcagt agcagagttc atcgacctga gaggaaagtt cagcgacccc       180
     gcgcgggtga agaggacatc cattgatacg tgcacggcct ggtggacagg ctcacacggt       240
     gagtacactt gtccccattt ttcccgtaac tggtgtcctc attgcgctgt tttgaacttt       300
     ttcggtgctg cttttcgtga cttctgctgc tgctgaggtt ctgttggacg attgctggac       360
     gatcacgagc tgtttggacc gaccgctggt tatttcggcg acgattggag tacggaaggt       420
     acttgtgccg tactgctggc cattgtttgg ccattgttta cccgtgctag ctcggggcgc       480
     gtatgttacc gggggcgcgt atttagttac ggttttttgc aaggcctgta cagccaggct       540
     cacagggtga gtactcggct ggaattttcg ttgctcgacg gtgtttgcaa tattttgctt       600
     ttctcggtgg acgacgcgct gctctcgagg gactttcgct gtgtttcggc gacgttatcg       660
     ctgcggctgt acattggccg gcggagagtt ttggagagta tcctgttggg cgttaaatat       720
     acaaggcctt gtttaatagg ctcacaggtg agcctctttc caactcccta gcgattgttt       780
     gtgtggtgct tcgcttcgct ctctttttgc agttcagttg ccctgcgtca ccatgccgaa       840
     gaaggtgtcg tacaagctga agattcgcaa caccatcctt gcgtctctca accgcgccga       900
     caagttcctg cagaactttg tgctggaaaa gcacgccgat caggtgcagt cgcggctcga       960
     tgcggtcaac caggcctggg cggagttcga ggcgctccag cttgagatcg agaccatcga      1020
     ggaggaggac ctcaaggaag aggatgatgc gacagccatg gaggaggaac atgagcgagt      1080
     ccgagagcag ttcgaggggt tgtaccacaa ggtaagggca gggttgaagt cgaggttgcc      1140
     ttctggggtt gcgtctgggt ctagtgcatg cgttgcgcgt gccggcatac agttgccgaa      1200
     gatcactttg ccaaagttta gtggggagta cgatgagtgg ttgcctttcc acgacacttt      1260
     caagtccctc atccacgaaa acgttgattt gaccgcgatt cagaagttcc actacttgcg      1320
     agactgtctt atcggtgagg ccagaaagat gatcaactcg agtgagttta gcgcgaagag      1380
     ctatcaggtg gtctgggact tgttggtcaa gcggcatgct aacaagtatc tccagaagaa      1440
     gcgttatgtc aacgggttgc ttcagtttcc gcgagtgaaa ggggtgtcgt cgagtagcat      1500
     ccacgacgtg atggatcatt ttagtcgctg tacgcagatt ctggaccagt tgggcgaagt      1560
     gaccggtggc tggggcgtaa tgctgacgca gttgttggtg tcgaagctgg atgacgtgac      1620
     gcagaaggaa tgggaggcgt tggcagccaa gaaggaggac ccgcagttca ccgacgtgat      1680
     agcgttcctg gaggagcgga cgaaggtctt ggatgcggtc gcagttgatc agctgttggg      1740
     cagtcagcgt ggttctccct ccgtgtcttc ggttccagca gcccagccca agaaatcgtt      1800
     cccgaagctg acagtgaacg ccgcttccga ctcttcctct ccgaagtgca ggatgtgtag      1860
     cggcccacac tcgctttcga gctgttcgga cttcaagaag ttgtcgctgg atggtcggaa      1920
     caggctggtt ttgtcgaaga ggctctgcag aaattgtttg tggagtggcc atttcgtgag      1980
     ggactgccat gtcaggagtc gctgctccag ttgcagcgag aagcacaaca ccttgctgca      2040
     tcctgttggt agaactggtt ccggttccac tccgagcgct gcggtaacgg gagattcaca      2100
     agagggtggt tcgcgttcct cgacggcgcc ggcagctcaa ccgcaagcgg tgacgagttc      2160
     ggtggccaca atttacgctg caaacgtggc cgcggaatcg cggaaagtcc acgtgttcct      2220
     gtcgacggtg ctcgtggcgg tgaaggattg ccatggccgg ttacacaccg caagagcgtt      2280
     gctcgatagc gggtcgcagg cgaatctgat cagtgagcga ctgtgtcaga tcttgagatt      2340
     gccgcggaag aaggtgagtg tgccgatctc cggcgtcgga agttcccgta tgcaggttga      2400
     tagctcggtg tcggcgattg tctcctcgcg tgtcaccaac tatacggtcc cgatggagtg      2460
     tctggtgctg aagaaggtga cggaggacca gccgtcggcc acaattccga tcgaccagtg      2520
     gaacttgccc tctgacatgg tgttggcgga tcccggattc cacaagcggg ctccaatcga      2580
     tttgctgcta gggctggagt tcttctacga gttcctgttg ctgaatggtg gccgggtgca      2640
     gatccagcgg ccgggagaag gtcttccgct gttcgtgaac acggtcttcg gttggatagc      2700
     tgcgggaaag accgatctgg ggagtctaaa ccccgtcccg agctgtcacg tctccgtcaa      2760
     tgcgactttg gaggagaaga tcgagcgctt ttggacgatt gaggagctgc aggaggcacc      2820
     gaagcggtcg caagaggaac aggactgtga ggagcatttt caggccacgt tttcacgcga      2880
     cgtcacgggt cgatacgtgg tgcgacttcc gaagcgcatg ggtttcgaga agatggtcgg      2940
     cgaatcgcga aatatggcgg tgcgacggct gatgcagttg gagcggagac tgggcaagga      3000
     cgaaagcttg cgaaagcggt acaacgaggc gattcaggcg tacttggatc aggaccacat      3060
     gaaggttgtt tcggaggagg agctgaaggg cgacaagcgg cttgaatgct acctgcctca      3120
     ccatccggtc ttcaaggagt ccagcacgac cacgaagatc cggcccgtgt tcgatggttc      3180
     tgccaagacg acgtcgaatt tctcgctgaa cgaggcgctg atgattggtc cggttctcca      3240
     ggacccgttg ttcgatttgg tgttgcgctt tcggaagaag caggtagctc tggttgcgga      3300
     catcgagaag atgtacctgc aggttaaggt ccatccggac gatacccctc tgcagcggat      3360
     tctgtggagg ccttcgccgt cggagccaat aaggacgtac gagatgctac gggtgacgtt      3420
     tgggttggcc ccatcgtcat accttgccac gcgctgtatg cagcagctgg cgcaggacga      3480
     aggagaggtg tattcacgtg cgaaggaagc actgttgcgt gacttctacg tggacgattt      3540
     catcggcgga gcggactccg aagaagaagc gctgttgttg cggcaggagc tggagcagct      3600
     gttgccgaag ggtggattta ggctgcgcaa gtgggtgtca aacgccacag gggcgttggc      3660
     agggctggct gcggacgatt tgggtacgca gaccacgctc agtttcgacc aggagcaggt      3720
     gaagacgctg ggaataaact ggcagccagg gccagacgtt ctcggcatcg atgtcacggg      3780
     tttgtccgtg aatgggcaat ggaccagacg gaaggtctat tcggtcattg cccaactttg      3840
     ggatccaact gggatcactg ctccggtcat ttcgtgggcc aagattcgaa tgcagctgct      3900
     gtgggtcgcg actcaaggct gggacgaccc attgagaccg gatttggccg ggaggtggac      3960
     tgagttctac cagcagttgc cggagttgtc gaagatttcg gtcgacaggt gcgctttcgt      4020
     ggaaaatccg gtccatgtcg agtttcatgt gttcgcggat gcgtccgaag cggcctacgg      4080
     agcgtgcatc tacgctcgtt cgatcagcca gtcggggctg gtcaaaattt cgctgttggc      4140
     ggccaagtca cgccccgcag ggttgaaaaa ggtcaccctg gcgaggttgg agctgtgtgc      4200
     agctttgatg gcagcaaggc tgtaccggaa ggtcgtgcaa gccctcaaga tggagggcac      4260
     ggagagttgg ttctggtcgg actcgacagt cgtgctggcg tggctgaggt caccgtcgta      4320
     cgtgtggccc acgttcgttg cgaaccgagt ctcgcacatc caggagttga cgaaagggca      4380
     tcgctggaac cacgtcaagg ggactgaaaa cccagcggat ctcgtttccc gtggagtcat      4440
     gccgaaagat ctcgttggat tgcggctgtg gttctacggt ccgaagtggt tggagtcgtt      4500
     cgaggagtac tggagcagag tgaagcattt ggaagtcgac gagcctgctg aggagttgct      4560
     ggagaagaga aagaacgtgc tggtcgtgtc tgcttccccg gaacctcacc cgctcatcga      4620
     tcgttacggc agttactgga agctgctgag gattacggcg tactgcgtga ggtttgtccg      4680
     gagatgtcag cgtcgcaagc agccccctag aaccccattt ctcaccgttg gagatttgaa      4740
     ggaggcaaag ttcgctctcg tgcgcggcgt gcagcaggaa cccttcgccg cggagatcaa      4800
     ggcgctcgca aaccatcgac tcgttccggc tcactcgtcg ctgaagctgc ttaacccgtt      4860
     tctcgaccag cagggcattc tgcgcgttgg tggccggctt ggactcgcgg gcgaagcgta      4920
     ctctacccga caccctatga tccttcccag cagcaacgtt ttcacgcgac aaatggcggt      4980
     cgcataccac gaaacttcgc tccactctgg cccccgtatg acgctcgctc aaattcggca      5040
     cgaattttgg ccattgaacg gcaaacaatt ggcaacttac acttttcgca actgtgtgcg      5100
     ctgttttcgt accaaccctg cccctgtaaa gcaaccccct ggtcaactcc caaaacctcg      5160
     aacaaccctc tctcgcgcat ttaccgtcac cggcgtagac tattgtggcc ctgtctacct      5220
     gaagcccgta caccgtcgag cagctgcgca gaaggcgtac atcgcggtct tcgtgtgctt      5280
     cagcacgaaa gcggtccacc tggagctggt gggggacttg accaccgctg cgtttcttgc      5340
     tgccctgcgt cgttttgttt ctcgccgagg tctaccgtcc gagatccact cggacaacgg      5400
     tctcaacttc cagggagcaa gcaaccacct gcgcgagctg tacgagctgc tacgagacaa      5460
     caaggtgatc acggagatca ccagcgaagc gtcccgtcgt gggatcgaat ggaaattcat      5520
     tccgccgaga gcgccgagct tcggcggcct atgggaggcg gccgtgaagt cggccaagac      5580
     gtcactcgtc cgtgtgctgg gtcaacgaca actcaccttc gaggacatgg cgaccgtcct      5640
     cacccagatc gaagcggcca tgaattcgcg cccgcttacc ccgttgtcgg aggacccaga      5700
     cgaactggac gtgctcacgc ccgggcactt cctcgccgga tcgtcgctgc tagcgattcc      5760
     ggatccaaac tacactgacg ttcccacgaa ccggctgcaa cactaccagc aattgcaaca      5820
     gctggtgcag caacactgga agcggtggag gcgggagtac atctcgcagc tccacaacca      5880
     gaaccagaaa ttcccgcaag caacccagct gaaggccggg cagatggtgg tcctcaagga      5940
     ggacaacaag gcggcaatcg agtggcccct cgcgcggatc gttgaggtct acccaggccc      6000
     ggacggcgtc gtccgcgtcg tgaagctgcg tttgccgaac ggtgcggtct acaagcggca      6060
     gtccgcacgt atctgtttgc tgccgttcga gaaggactcg gcggtgcagc tcacgagcgc      6120
     cttcaaccct caaccgacac aaggcgcagc gtaggaggaa gatcgccgtc aaccgtcaac      6180
     cctacggcgc aacggagttg gtgaagaagg cgtcaagaag aaaaatttga attttttgaa      6240
     gtgctagttt aagtaggttt aggttttgag tttagcgcta gattttgttt gtgtttaaat      6300
     tcctagagaa tttaaggtgg ccggca                                           6326
//
ID   BEL-81_CQ-LTR repbase;    DNA;    INV; 726 BP.
XX
AC   AAWU01022158;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-81_CQ_;
KW   BEL-81_CQ-I; BEL-81_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-726
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 304-304 (2011).
XX
DR   GenBank; AAWU01022158; Positions   12831   13556.
XX
SQ   Sequence 726 BP; 204 A; 155 C; 187 G; 180 T; 0 other;
     tgttcggttg aagagtaaaa ctgactcgcc accctgccgt gtagcataaa ttctcttgct        60
     ataatttgcg tatatacacg gcagggtggt ggtagtggta gtcttgatcg tcgcgatcac       120
     gcgcacttct gcatggtttt ctgcattcct cttcacactg cctgggccaa atatcagtcg       180
     aaatagatcg tcgtcgcggt cggatcgcgt tgagaagaac acttttgttt actttttgga       240
     cttaggaaat aaagtctcgg tcggtctgaa taaattttgt agttttatga agaaaagtcg       300
     tttctgtgtt tttacctgtg aagaagaaaa tacttaccgt tacttacccg tttgaccact       360
     gcgaaaccct ggtcgattcc gccgttctcg tgcgccgttt gcctggaaaa gaagaagatt       420
     ctgctgccga agtttttgcc tgctgtgggg agaaaattac tgctgccacc gctgccggat       480
     tgaacctgct ggaagatact tacctgtgga acctacaaaa gaaagaagga agaaagcggg       540
     acggaaacgg gacggacagg atttggaagg aattttggta cggaaaggga cggaacacac       600
     agaggacgac acaacgcaca aacacaacac acgacgaaaa cacaacgtag aaattagacg       660
     tccaacgaac aggataaaat caggtgagcg cggatttcga ggttggccaa ttcacgggtc       720
     cgaaca                                                                  726
//
ID   BEL-820_AA-I repbase;    DNA;    INV; 5921 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-820_;
KW   BEL-820_AA-I; BEL-820_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5921
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5921
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2169-2169 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..5675
FT                 /product="BEL-820_AA-I_1p"
FT                 /translation="MPETDRNDCKICRKSNNLDNMVFCPRCDEWYHYQCXG
FT                 VNESVADRSWVCGNCSILPPIDPPGQTSTPVSNLPARSTASPVVAGVSSII
FT                 PPPGISTASSLPDPRQSILTEQARASLQWIQQQRESLEREMEENHKQELER
FT                 KRLEMRKLANRAMMGVVDSTGDAIATSSVGQAEALGINKVQNWMQQMVGEM
FT                 KNLSIAQPSGRTXVTPTIVPVYDISSVPTGANLGVSDLTSASNFLGYQGRQ
FT                 ANVPPATVPLVEPCSVAPSQLFSSRLVSFPPEIPSSVSQATVVAPQLGLSI
FT                 QSEIDHLSRLGAGPPSLVSRVPVMSGLGTTNVVSACPTIPTVGISSIHSGL
FT                 AINPGGMGPQHYPGLAPGVQSASFSTSVPGFTSSYGVTSSAELPQSISVPG
FT                 YGVNVSSASGFHIGQNSVPGLPRVYNPARQYQVVPTQHQLMARQVISKDLP
FT                 LFRGDPEDWPLFYSAYVNSTTACGYTDVENLARLQKALQGRALEAVKSRLL
FT                 LPACVPQVLNTLYMLFGRPELIIQTLLNRVREVPAPRPDRLDTLISFGMAV
FT                 QNLCDHLEAAGQTAHLCNPTLLQELVEKIPAQQRLDWALYKRQFVAVDLRT
FT                 FAAYMSTLVAAASDVTVIADSKTSRPGRSERAKEKNFLNAHSAAEPLKKES
FT                 REDTAPIVLCLACNGAGHKVKDCAVFKKWDPESRWKTVQDQHLCRTCLGKH
FT                 GRRPCKSHACCGIDGCQQRHHQLLHSQVQKRQPANEQKSAKASKDNVEGVN
FT                 AHHTAEKSTLFRIIPVQLSWNSRSVDTFAFLDDGSSMTLVEQSIADRLGID
FT                 DGEPLPLCLTWTSNVNRQIPNSQRVAINISGTGKSEHYALNDTRTVANLKL
FT                 PKQTLKYEELARKYAHLRGLPISSYDTIAPGILIGSNNASLIATLKLREGQ
FT                 LGDPLAAKTRLGWSIYGYAADRRNAENFSFHICECQKEHNTERELHELVKR
FT                 HFTLESVGVSADKGPESDEDKRARRILEETTKRTSKGFETGLLWRTDSIEF
FT                 PNSYPMAIRRLECFERKMRKDQKLRVSVQRQIGEYLDNGYIHEVTPQEMEC
FT                 VDPKKVWYLPLGAVRNPKKPDKIRLVWDAAAKVRGVSLNTMLLKGPDMLVP
FT                 LAEVLCGFRQHSVAVSGDLKQMFHQFRIRQQDVHSQRFLYREHPSQAAKVF
FT                 VMDVGSFGATCSPCQAQYIKNLNAKEYESEFPKAAQAIIKKHYVDDYLDSF
FT                 DTEDEAIKIALQVKEIHACGGFEIRNWHSNSTTLLERVGEPQEQRPKMIIG
FT                 EAGSAAERVLGLLWLPEDDLLGFAADLQLDGITATKRNILRCVMSLFDSQG
FT                 ILSHITVQGRMIIQDTWRSQVNWDEEVDETIRTRWRKWTTLLQQVSKIRLS
FT                 RAYFPGFSIADIGSVDLHIFTDASEEAYAAAAYFRAVIHGKVFCTLVMAKA
FT                 KVAPLKALSVPRLELMGALLGARLAKAVSEYHTIPVRRRILWTDSLATLAW
FT                 IQSQHCRYRQFVAFRVGEILSKTEAAEWRWVPTNHNVADEATKWGKGPSTN
FT                 TKSRWFQGPDFLYLTETEWPKRASTTPLVTDEELRPSMVHHEEVNVDIIRW
FT                 ERFSKWERLLRAVAYVHRFISNCRLRIKKQRSATEYLSKEELLKAENSLWR
FT                 ITQATAYSDEIAMLKHQNANPKKSIEKTSPIFKLSPFIDDRGVMRMDSRIG
FT                 MVPYVNYDFKFPIILPRNHPLTLLLVNWYHRRYLHANHETVHNEVRQRFQV
FT                 SNLRSVVRQAAKNCQVCKISKALPLTPRMAPLPDARLAATVRPFSYVGLDY
FT                 FGPIQVKVGRSCVKRWIALFTCLTIRAVHLEIVHALSTESCKMAVRRFVAR
FT                 RGSPMEIYSDNGTNFQGASRELREELDHESTARRSVLETLDQRISPNDCQA
FT                 NQMVQ"
XX
SQ   Sequence 5921 BP; 1592 A; 1458 C; 1607 G; 1260 T; 4 other;
     aagcttwaag aatctgcttt ggacgattca gagacaggag gatgccagag accgacagaa        60
     acgattgtaa gatctgccgg aaatcgaaca acctggataa catggtgttc tgtccacggt       120
     gtgatgaatg gtatcattac caatgckctg gtgtcaacga atccgttgcg gaccgaagct       180
     gggtgtgcgg gaattgctcg attctgccac ccattgatcc acccggacaa acaagtactc       240
     cggtgagcaa tctacctgca agatcaaccg catcgcctgt cgtggccggt gtatcgtcta       300
     tcatcccacc gcccggaata tcaaccgcaa gcagcttacc ggatcctaga cagtctatct       360
     tgaccgaaca ggcgagggcc agccttcagt ggattcagca gcaacgcgag agcttggaga       420
     gggagatgga agagaaccac aagcaggaat tggagcgaaa gcgtttggaa atgcggaagc       480
     ttgcgaatag agccatgatg ggggtagtcg acagcacggg agacgcgata gcgacaagtt       540
     cggttggaca ggccgaagcg ttgggcatca ataaggtgca gaattggatg caacaaatgg       600
     tcggcgagat gaaaaacctc tcaatcgctc aaccgagcgg gaggacagwg gtgacaccga       660
     cgatcgtacc agtgtatgac atcagttctg tcccaacagg tgcaaatttg ggcgtatcag       720
     atttgacctc agcgtcaaat ttcctcggct atcaaggtag gcaagcgaac gttcccccag       780
     ccacggtgcc cctagtagag ccttgttcag tggcaccttc acagctattt tcgagtaggc       840
     tagtaagttt cccaccagag atcccctcct cagtctcaca agctacggta gtagctccac       900
     agttaggact aagcatacaa tcagaaattg atcatttgag tcggttaggc gctggacccc       960
     caagcttggt tagcagggta ccagtgatgt cagggttggg aacaacaaac gtagtgtcgg      1020
     cctgtcctac aatccccacg gtgggcattt cttctattca ctcggggctt gcaatcaatc      1080
     ctggtggcat ggggccacaa cattatcccg ggttggcgcc gggagtacaa tccgcaagct      1140
     tctcaacatc tgttccaggg ttcacgtcga gctatggcgt cacgagtagt gcagaactcc      1200
     ctcaatcaat atcggtacca gggtatggag taaatgtcag ttcggcaagt gggttccaca      1260
     tcgggcagaa tagcgttcca ggactcccga gagtttacaa tcctgcccgc caataccaag      1320
     tcgttcctac ccaacatcaa ctgatggcga ggcaggtcat atccaaggac cttccgctct      1380
     tcagaggaga cccggaggac tggccacttt tctacagcgc gtacgtgaac tcgacaacag      1440
     cgtgtggcta tacggacgtc gagaacctgg ccagacttca gaaggcattg caaggtaggg      1500
     cactcgaagc ggtgaaaagc cgattactcc ttccggcgtg tgtaccccag gtgctaaaca      1560
     cgctttacat gctgttcggt cgtccagagc tgatcataca gacattactg aatagggtcc      1620
     gtgaagttcc ggcaccgagg ccagaccgat tggacactct gatttcattt gggatggctg      1680
     ttcagaattt gtgcgaccac cttgaggcag cggggcagac agcccacttg tgcaatccga      1740
     cactactaca agagctggtg gagaagatcc ccgcacaaca gcgactggac tgggcgctgt      1800
     acaagaggca gtttgtggcg gtcgacttgc gcacgtttgc agcatatatg tccaccctag      1860
     tagcggcagc ttcggatgtc acggttatcg cggacagcaa gacatcacgg ccaggcagaa      1920
     gtgagcgggc caaagagaag aactttctca atgctcattc ggccgccgaa ccactgaaga      1980
     aggaatccag agaagacacc gcccccatag tcctttgcct ggcatgcaac ggtgctggtc      2040
     acaaggttaa ggactgtgct gtgttcaaaa aatgggaccc tgagagtcgg tggaaaactg      2100
     tgcaagatca acacctatgc cgaacctgtt tgggtaaaca tggtcgtcgc ccgtgcaaat      2160
     cgcatgcctg ttgcggaatt gatggttgtc aacagcgtca tcatcagctg cttcattctc      2220
     aagtgcagaa aaggcaacct gctaacgagc agaagtctgc gaaggcaagc aaggacaacg      2280
     tggaaggtgt gaatgcccat catacagcgg aaaagtcaac gttgttcaga ataatcccgg      2340
     tgcagctgtc ctggaacagt agatcggtcg atacgttcgc gttcctggac gatggatctt      2400
     cgatgacatt ggttgaacag tccatagcag atcgtttggg catagatgat ggcgaaccac      2460
     tccctttatg cctaacgtgg actagcaacg tgaacaggca gattccgaac tctcagcgag      2520
     ttgcgataaa catttccggt acaggaaaga gcgaacacta tgcgctgaac gacaccagaa      2580
     cagttgcgaa cctaaagctt ccaaaacaaa ccctgaagta tgaggaattg gctcggaaat      2640
     acgcgcacct tcggggatta cctatcagca gctacgacac aatcgcacct gggatcctga      2700
     taggatccaa caacgctagc ttgattgcaa cgctgaagtt acgtgagggc cagctaggcg      2760
     atcccttagc agctaaaacg cggctaggat ggtccatata cggctatgca gctgatcgaa      2820
     gaaacgcaga gaatttcagt ttccatatct gcgaatgcca gaaggaacac aacacggaac      2880
     gggagctaca tgagctggtc aagcgacatt tcaccctaga aagtgtagga gtgtcggctg      2940
     acaaaggacc agagtccgac gaagacaagc gcgctcgtcg catcctagag gagacaacga      3000
     agcgaacatc gaagggattt gagactggct tgctttggcg aactgattcc atagaattcc      3060
     caaacagtta ccccatggca atacgtcgtc tggagtgctt cgagcgaaaa atgagaaaag      3120
     atcaaaaact acgagtcagc gtgcagcggc aaatcggcga gtacttggac aatgggtaca      3180
     tccacgaagt tacgccacaa gagatggagt gcgtcgatcc caagaaggtt tggtaccttc      3240
     cacttggagc tgtcaggaat ccgaagaagc ccgacaaaat caggcttgta tgggatgcag      3300
     cagcgaaagt gaggggcgtg tcgctaaata ctatgctcct aaaaggcccg gacatgctgg      3360
     tgcctctagc ggaagtgctc tgcggatttc gccaacattc ggtagcagtc agtggagacc      3420
     tcaaacagat gttccatcag tttaggatcc gtcagcaaga tgttcatagt cagcggtttc      3480
     tatatcggga acatccgtcg caagcagcca aggtcttcgt aatggacgta ggaagctttg      3540
     gggcaacctg ctctccttgt caagctcaat acataaaaaa cctcaacgcg aaggaatatg      3600
     aatcggaatt ccctaaggca gcacaggcga ttataaagaa gcactatgtg gacgactacc      3660
     tcgatagttt cgacacggag gacgaagcaa tcaagattgc gctacaggtg aaggagattc      3720
     acgcttgtgg cgggttcgag atacgaaact ggcattcaaa ttccactacg ctgttggaac      3780
     gagttggaga accacaggaa cagcgaccaa agatgatcat tggtgaggca ggaagtgcgg      3840
     cggagagagt tctgggccta ttatggcttc cggaagatga ccttcttggc ttcgctgccg      3900
     atctacagct cgatgggatc actgctacaa aacgaaacat tctccgatgt gtaatgagtt      3960
     tgttcgattc acaaggcata ttgtcccaca ttacggtcca gggacggatg attatccagg      4020
     atacctggcg cagtcaagtg aactgggacg aggaagtaga cgagacgatt cgtactcgtt      4080
     ggcgcaagtg gaccacgctg ctgcagcaag tgagcaaaat cagattatca cgggcctact      4140
     tccccggatt ctccatcgct gacattggct cggtggacct ccacatattc acggatgcga      4200
     gtgaggaagc atatgcggct gctgcttact tccgggcggt tatccacgga aaggtcttct      4260
     gtacattggt catggcaaag gcgaaggtgg cgccattaaa ggctctgtcg gtaccacgct      4320
     tggaactgat gggagcactt ctgggagcca gactggcaaa ggcagtcagc gaatatcata      4380
     cgattcccgt acgccgtcgg atactgtgga cggattcttt ggcaacatta gcctggattc      4440
     agtcccaaca ttgccgatac cgacagtttg ttgcctttag ggtaggagag atcctaagca      4500
     aaacggaggc agcagaatgg agatgggttc ccaccaatca caacgtggct gatgaggcca      4560
     ccaagtgggg aaaaggtccc agcactaaca ccaaatcccg ttggtttcaa ggacctgatt      4620
     ttctgtacct caccgaaacg gagtggccaa agagggcatc gacgacgccg cttgtaacag      4680
     atgaagagct gcgaccgagc atggtgcatc atgaagaagt caacgtggac atcatccgct      4740
     gggaaaggtt ttcgaaatgg gaacgccttt tgcgggcggt tgcgtatgta caccgcttca      4800
     tctccaactg tcgtcttcgg attaaaaaac aacgatcggc gaccgagtac ttgtccaagg      4860
     aagaactgct gaaggcggaa aacagtctat ggcgtattac gcaagctacg gcatactcgg      4920
     acgaaattgc catgctgaaa catcagaatg ccaatcccaa gaaatcaatc gagaagacaa      4980
     gtcctatctt caagttgtca ccattcatcg acgatcgggg cgtgatgcgt atggatagtc      5040
     gtatcgggat ggtaccttat gtcaattacg acttcaaatt ccccataatc ttaccacgta      5100
     atcatccact gacgctactc ctcgtaaact ggtaccatcg tcggtatctg catgctaatc      5160
     acgagacagt gcataatgaa gttcgccaac gctttcaggt gtcgaacctt cgctcggtag      5220
     ttcgacaggc agccaaaaat tgtcaggttt gcaagatttc caaagctttg ccactgaccc      5280
     ccaggatggc ccctctacca gatgcacgtc tcgccgctac ggttcgtccg ttttcttatg      5340
     tcggacttga ctactttggg ccgatccagg tgaaagttgg ccgtagctgc gtcaaacggt      5400
     ggattgcttt attcacgtgc ctgacgatca gagcagtcca cctagaaatc gtccacgcgt      5460
     tgtccacgga atcgtgcaag atggccgttc gtcggttcgt ggctcgccgt ggatcaccca      5520
     tggaaatcta ctccgacaac ggcaccaatt tccagggagc cagccgcgag ctacgagaag      5580
     aattggacca tgaatcgaca gctcgtcgat cagttctgga gacgctggat cagagaatat      5640
     ctcccaacga ttgccaagcg aaccaaatgg ttcaatgaat ctgaggcagt gaaggtcaac      5700
     gatttggtga tgatagtgaa cgagaaccag cgaaacggat ggaccagggg acgagtcttg      5760
     tcggtagtaa agggccgaga tggccgtatt cgccaggcga tggtacagac tacatgcgga      5820
     gtattccgac gacccgtatc aaagttagca gtactgcmgg tgcaagatag gagtaacgca      5880
     gagtcatcag cggaaccgga agtgcgttac gggcaggggg a                          5921
//
ID   BEL-820_AA-LTR repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-820_AA-I;
KW   BEL-820_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-662
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-662
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2036-2036 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 662 BP; 207 A; 134 C; 119 G; 202 T; 0 other;
     tgttgccgac actggcagca ctgattattc aaatactgat cctgttcgcg atacccccca        60
     atcggattct gcacacacca actgacatcc atcaaagtat ctcgggtcat gtagcgaatg       120
     acagacgtca atgcgattag gtaggccgaa gtgtaaaacc acaagtcatg tgcgaacata       180
     cggtgtgaat tatcctctct atttctttaa tttactatta ttattcaatt accacctttg       240
     ggattgtgca caagtgcgaa acgaatttat aatttcttca ttgtaagtta aacgagaatt       300
     tattagcgaa atcgagccta caaaatgaat taactttata taggttagcg acacccatag       360
     gtccgaatag atcccttcaa tcgtgattgc gatatcacta ttctgaactg taagttatca       420
     attaatactc tgttacaatt tattactata gaattattct ataggtatct gaagagcctc       480
     ggaagaccag cgtaagctag aaattgttgg gttagaccga aactaagaag accagattgt       540
     aagtggtagc attcagtttt ctttaaaatt ttgcgcctaa taaatctttt ccgtagcttt       600
     aagaattcgg caaactgaac tacagtgcga ttctctatcg aggtccgaaa ttctacccaa       660
     ca                                                                      662
//
ID   BEL-821_AA-I repbase;    DNA;    INV; 5537 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-821_;
KW   BEL-821_AA-I; BEL-821_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5537
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5537
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2170-2170 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..5535
FT                 /product="BEL-821_AA-I_1p"
FT                 /translation="MERSPRPSRRCNTGTVPKRFENYICEFPCSDTNKMRR
FT                 TPPPSTSKNLKPNDPLKNDPQNVPLSSINRQTENIVSVRANSQNSRMSRAS
FT                 NVSKTQSQIRALELANRIEEEELQASLEQDRILAEERLEALKIQKELELKR
FT                 EQKKAEFLKKRREREVQINELKSHSGISSCSSMENVQNWLNQNENVANNLE
FT                 SIDEPMPEVVSKIHSEPEVVGPNGMAEVLSQAFKALQNRNVKELPSFSGNV
FT                 MDWPIFINEFETSTKELKLNDADNLRRLNKSLQGNARKAVESLLTAPENVN
FT                 QIIRMLKSNFGRTEWIVANRLEILRNLDYVRDNNIESFRAFYNAVVGTAIA
FT                 LKNVKAEAYLLNPELISNVADKLPSFSKQMWTRHKAMLMRENEAIDFGVFA
FT                 RWLEDEMENQLASINSLSFSKRSMMGGRSRQPVLNINARGDDEHMKKCPLC
FT                 GSNEHKSLTKCGKFVRSSVEQRRLIARNCKVCYICLEGDHNRMNCKSKKCC
FT                 RVCKKNHHELVHIEEAPRKFHRNPEMEFDSSEDICNVNSKCSNTLLRVCKV
FT                 KIRTEEAIHHVFALFDEGSSISMVDASFAKTMGLSGPIKPITYRWTNGISH
FT                 RDADSMMLSFQISGQANDAKWFEVNNVRTIENINLPTVKLNVDKIRNLYPL
FT                 LDEDKLNAIKDVSPVLLIGSNNAGLIVPLKTVQYSIRGLQLTRCHLGWTIH
FT                 GEIEPTMDEPEEQLHAFMCSETEDVELTSLIKQMYKIEDFGVTHQKPKISE
FT                 EDERALDIMRRTLKRSNDRFEIGQIYKFNNFKFPDSKLQALRRLQIMEKKM
FT                 DSDPKLAEQYCQKIQDYLDKGYARKLNVDELKETNNTWYLPHFSVHSANKF
FT                 RLVMDAKAKSHGFSLNDLLLKGPDFVPPLIAVLMRGRKKKIAFTADIKEMF
FT                 HQVLIRPQDQDSQRFFWRGMNRSDPPEVYVMVAMIFGAVSSPSIAQFIKNF
FT                 NARELDERLPGVERAIVDQHYVDDYFDCEDTEQEAIDLIQKVITAHECGGF
FT                 KLVKFTSNSKTVVQTIDPSLRADLGESRTVRILGLKWNLDTDEFVFPLDFP
FT                 QLDEVYRFGNKIPTKRELLKFMMGIFDPLSMLSPITIHLKIMFQELWRLQT
FT                 GWDDKLPDGIIPKWKEWLDETAKLREIRIPRYYFPGLSSFGCIEIHAFCDA
FT                 SDKAFACVIYIVHRYDNKSNVAQVFAKSRVAPLKSQTVPRLELQGCVLASQ
FT                 MSKTVQDELHVEITSVYLWTDSKICLSWMKTKEKLTAFVGARVTLIKDNGH
FT                 HTGMWHWIPSHLNVADLATKSSMFGSMFDWLKGPDFLYQDRDSWPIDEDIP
FT                 LSPVEQVTFLTEVIIPSEICLQVSSEELVQLPDIRRFSNYHRLIRTTAYYL
FT                 KMRNILAMPKMEKPKEFKIDVHDMDNARKIWYKKVQEDAFSEEIRDLKSNG
FT                 YVKVSSRLRAYSPFICDGVIRMRGRIQEEGRSLELNNPVILPDNHSFTDLL
FT                 IQLHHIANGHQGIETVINTLQQRYRILKMRSQVKKLVKSCIRCRELRAKPT
FT                 IAQMGNLPPERTTPYTYPFNYTGIDYFGPLMVKVGRHLEKRWVVLFTCMTS
FT                 RAIHLEVVPALDTNCCIMAIRCFMAFRGVPKKILTDNGTNFTGANKELKKL
FT                 VQELDQPSIEETLSNRGIEWQFIPPGAPHFGGCWERLIRTVKTALNVMLKE
FT                 RNPTDLILRTTLCEVMNVVNNRPLTHISDDPQDPEPITPNMLLLGRNNFMQ
FT                 YDHDFNENDLDCRAAYKHAQIYADRFWRKWVSAYRPELLRRQRWHDNRNYY
FT                 EYKPGDLVMIVDETMHRGCWPKGLIETVTHGPDGKIRTVLVRTSRSRFTRP
FT                 VSKIVLLKANSVVAPE"
XX
SQ   Sequence 5537 BP; 1869 A; 994 C; 1157 G; 1517 T; 0 other;
     gaaatccact gaccagttta tatggaaaga tccccacgac catcaagacg ctgtaataca        60
     ggtactgtgc caaaaagatt tgagaactat atttgtgagt tcccatgttc ggataccaac       120
     aaaatgcgac gaacgcctcc accgtctact agtaaaaatc ttaaacccaa cgaccccctt       180
     aaaaatgacc ctcaaaatgt ccctttatca tcaattaatc ggcagacaga aaatatagta       240
     tctgttcgtg ctaatagtca gaattcgcga atgtccagag catccaatgt gagtaagacg       300
     cagagccaga ttagagcgtt agaattagcc aatcgcattg aagaagaaga actacaagca       360
     tctttagaac aagatcgaat tttagctgag gaacgtttag aagcattgaa aatacaaaag       420
     gaacttgaat taaagagaga gcagaaaaaa gcagagtttc tgaagaaacg tcgcgagcga       480
     gaagttcaaa taaatgaatt aaaatcgcat tctggaatat cgagctgtag ttcaatggag       540
     aatgttcaaa actggttgaa ccagaatgaa aatgtcgcga ataatttgga atctattgat       600
     gaaccaatgc cagaagttgt atccaaaata cattccgaac ctgaagtagt tggtcctaat       660
     ggtatggccg aagtattatc ccaagcgttc aaagcattgc agaaccgtaa tgttaaagaa       720
     ctgccttcat tctccggaaa cgttatggac tggccaattt ttatcaacga attcgagacc       780
     tcgacaaaag aattaaaatt gaatgacgca gataacttaa gaagactcaa caaatctttg       840
     caaggcaatg cgcgaaaagc tgtggaatca ttgttaaccg caccagagaa cgtgaatcag       900
     ataatacgaa tgttaaagtc gaattttggc cgtacagaat ggatagtggc gaacagatta       960
     gaaattttaa gaaatctaga ttacgttaga gacaataaca ttgaatcgtt tcgtgcattt      1020
     tataacgcag ttgttggcac tgcgatagct ttaaaaaacg tgaaagccga agcttacttg      1080
     ttaaatcctg aattaatatc aaatgttgca gataagctgc ctagttttag taaacagatg      1140
     tggactcgac ataaagccat gttaatgaga gaaaatgaag caattgattt cggagtattt      1200
     gctcggtggt tggaggatga aatggagaat caactcgcta gcatcaattc actatctttc      1260
     agcaagagat caatgatggg tggcagatca agacaacctg ttcttaatat caacgcgcgt      1320
     ggtgatgacg agcatatgaa gaagtgtcct ctatgcggct ccaacgagca taagagtttg      1380
     acaaaatgtg gcaagtttgt acgatcatct gtggagcaac gtcgcttgat agctaggaat      1440
     tgcaaagtct gctacatttg tttggaaggt gaccataacc gtatgaattg taaatcaaag      1500
     aagtgttgca gagtttgtaa gaaaaaccat cacgagcttg tgcatattga agaggcccca      1560
     agaaaattcc atcgcaatcc cgaaatggaa tttgattcat ccgaagacat ctgtaacgta      1620
     aattcaaaat gctccaatac tcttcttcgt gtctgcaaag ttaaaatccg cactgaggaa      1680
     gctattcatc atgtttttgc attgtttgat gaaggatctt ctatttcaat ggtagatgct      1740
     tcgtttgcaa aaacaatggg attgtctggg cctatcaaac caatcacata tcgttggaca      1800
     aatggaattt cccatagaga tgctgattca atgatgctca gttttcagat ttccggtcaa      1860
     gccaatgatg cgaaatggtt tgaggtaaat aatgttagaa caatcgaaaa cataaatttg      1920
     ccaactgtta aattgaacgt ggacaaaata cgaaaccttt atccgttact tgatgaagat      1980
     aagctgaatg ccatcaagga tgtttcgccg gtcctgttga tcggctcaaa caatgctggc      2040
     ctgatagttc ctttgaagac tgtacagtat tcgattagag gtttgcaact tacccgctgt      2100
     catctaggat ggactattca tggtgaaatc gagccaacaa tggatgaacc agaagaacaa      2160
     ttacatgcat tcatgtgctc agaaactgaa gacgttgagt taacatcatt aataaaacaa      2220
     atgtacaaaa ttgaagactt tggagtcacg caccagaaac ctaaaatttc ggaagaagat      2280
     gaaagggctc tagacatcat gagaagaaca ctgaaacgta gtaatgatcg ttttgaaata      2340
     ggtcaaatat acaaatttaa caacttcaag tttcctgata gcaaacttca agcccttcgt      2400
     cgacttcaaa taatggagaa aaaaatggat tctgatccta aacttgctga acaatactgc      2460
     caaaagatcc aggattatct tgacaaggga tacgcaagaa aacttaacgt agatgaactg      2520
     aaagaaacaa ataatacgtg gtatttgccg cacttcagcg tacatagtgc caataagttc      2580
     cgattggtaa tggatgccaa ggctaaatct catggttttt cactgaatga tctattgctg      2640
     aaaggaccag atttcgttcc tccactgatc gctgtactta tgcgaggtcg taaaaagaag      2700
     atcgctttta cagcagacat taaagaaatg ttccatcagg tccttatacg acctcaagat      2760
     caagactctc aacgattttt ttggcgtggc atgaaccgca gtgatcctcc tgaagtttac      2820
     gtaatggtgg caatgatttt tggagctgta tcatcacctt ccatcgcaca attcataaaa      2880
     aattttaacg cccgtgagtt ggatgaacgt ttacctggtg tagaacgagc aattgtagac      2940
     cagcactatg ttgacgatta ttttgattgt gaggataccg aacaagaagc aattgatcta      3000
     atccaaaaag taattacagc tcacgaatgt ggtggtttca agctagtcaa attcacctca      3060
     aattcaaaaa cggtagttca aacaattgat ccatcattgc gagcagattt aggagaatca      3120
     agaacagttc gtattctcgg tttaaaatgg aatttagata ccgacgaatt cgtattcccg      3180
     ttagattttc cacaactcga tgaagtatac agatttggaa ataagattcc tacaaagaga      3240
     gaattactca aatttatgat gggaattttt gatcctttga gtatgttgag tccaataacg      3300
     atccacctca agataatgtt tcaggaattg tggcgtttgc agactgggtg ggatgacaaa      3360
     cttcccgatg gtattattcc aaaatggaaa gaatggttgg atgaaacagc aaaattgaga      3420
     gaaattcgaa tcccaagata ttattttcct ggactttctt catttggctg catagaaatt      3480
     catgcttttt gtgatgcaag cgataaagct tttgcttgcg ttatttacat agttcaccgg      3540
     tatgacaata agtcgaacgt tgctcaagta tttgcaaaat ctagagtagc accgctgaaa      3600
     tcacaaacag ttcccagatt agaattgcaa ggttgtgtgt tagccagtca gatgtcaaaa      3660
     actgtacaag atgagcttca tgttgaaatt acatctgttt atttgtggac cgattcaaaa      3720
     atttgcctga gctggatgaa gacaaaggaa aaactcactg ctttcgtagg ggctcgagta      3780
     acattgatta aagataatgg acatcatacg ggaatgtggc attggattcc atcacatctc      3840
     aacgtggcag atttagcaac aaagtcatca atgtttggaa gtatgtttga ttggttgaag      3900
     ggtccagatt ttttgtatca agatcgagat tcatggccaa tagatgaaga cattcctttg      3960
     tcgcctgtag aacaagtaac tttcttaacc gaggtgatca ttccgtctga aatatgtctg      4020
     caagtatcat ctgaagaatt ggttcagtta ccagatatta gaagattttc aaactaccat      4080
     cggctcatta gaacaactgc ttattattta aaaatgagaa acatattagc aatgcccaaa      4140
     atggaaaaac ctaaagaatt caagattgat gttcacgata tggataatgc tcgaaaaata      4200
     tggtataaga aagtgcaaga agatgctttt tcagaagaaa tacgggattt aaagtcaaat      4260
     ggttatgtca aagtctctag tcgtttgcgt gcatattcac cttttatttg tgatggagtc      4320
     atccgaatgc gaggtagaat ccaagaagaa ggaaggtctt tggaattgaa caatcctgtt      4380
     attctaccgg ataaccatag ttttacggat ttgttgattc aactacacca catcgcaaac      4440
     ggacatcagg gtatagaaac tgtgatcaat accttacaac aacgatatcg tattttgaaa      4500
     atgagatcac aagtcaagaa gctagtgaaa tcctgcatta gatgtcgtga actaagagca      4560
     aaaccaacta tagcgcaaat gggaaacctg ccaccagaaa gaactactcc gtacacctat      4620
     cctttcaact atacaggtat tgattatttt ggaccattga tggtaaaagt aggacgtcat      4680
     ttggagaaac gctgggttgt actcttcaca tgcatgacca gtcgagcaat tcatttggag      4740
     gtagtaccgg cgttggacac aaactgttgt atcatggcaa ttagatgttt tatggctttc      4800
     cgtggtgtac caaaaaagat actaacggat aatgggacga atttcactgg tgcgaataag      4860
     gaactgaaaa aactagtaca agaattggat caaccgtcga tcgaagaaac acttagtaat      4920
     agaggaattg agtggcagtt cataccacct ggtgccccac attttggtgg ttgttgggaa      4980
     cgattaatac gaacagtaaa gactgctttg aatgttatgc taaaagaaag gaatcctacc      5040
     gatttaattt tacggacaac gctgtgtgaa gtaatgaacg tagtaaacaa tcgcccatta      5100
     acacatatat cagatgaccc tcaagatcct gagccaataa cacctaacat gctacttctt      5160
     ggtcgtaaca atttcatgca gtatgatcat gatttcaatg aaaacgactt ggattgcaga      5220
     gcggcatata aacatgctca aatatatgcc gacagatttt ggcgaaaatg ggtttctgca      5280
     tatcgtcctg aattattgag acgacaaaga tggcacgaca accgtaatta ttatgaatat      5340
     aaacccggag atttggtaat gatcgttgat gagacaatgc atcgaggatg ttggcctaag      5400
     ggtctaattg agacagtgac tcatggaccg gatggaaaaa ttcgaactgt tttagtgcga      5460
     acttcaagat ctagattcac cagaccagtt agtaaaatag ttctactcaa ggccaattct      5520
     gtcgtggccc cggagaa                                                     5537
//
ID   BEL-821_AA-LTR repbase;    DNA;    INV; 1134 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-821_AA-I;
KW   BEL-821_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1134
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1134
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2037-2037 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1134 BP; 228 A; 390 C; 263 G; 253 T; 0 other;
     tgttaccgat agcaacgagg ttgtgatcaa gaacaacaat tcaacgtagg tggccctgga        60
     acagagtgga aaaacaactt gtcattgtta gtcaaactat tacgcaagaa acatcaaact       120
     tatttcatct tcaccaattc aaacgaaact gtatactaca agcatctgag tagaattcaa       180
     gcctcgaaac catcagcaaa aacctacgat tcccactgca acatccctgg ttgcgatact       240
     tggtccatct cccggcaggt acgaccccaa gttccccgcg gcaacatccc tggttgctga       300
     catttggtcc gtctcccggc aggtacgacc ccaagttccc cgcggcaaca tccctggttg       360
     ctgacatttg gtccgtctcc cggcaggtac gactccaagt tccccgcggc aacatccctg       420
     gttgctgaca tttggtccgt ctcccggcag gtacgacccc aagttccccg cggcaacatc       480
     cctggttgct gacatttggt ccgtctcccg gcaggtacga ccccaagttc cccgcggcaa       540
     catccctggt tgctgacatt tggtccgtct cccggcaggt acgactccaa gttccccgcg       600
     gcaacatccc tggttgctga catttggtcc gtctcccggc aggtacgacc ccaagttccc       660
     cgcggcaaca tccctggttg ctgacatttg gtccgtctcc cggcaggtac gaccccaagt       720
     tccccgcggc aacatccctg gttgctgaca tttggtccgt ctcccggcag gtacgacccc       780
     aagttccccg cggcaacatc cctggttgct gacatttggt ccgtctcccg gcaggtacga       840
     ccccaagttc cccgcggcaa catccctggt tgctgacatt tggtccgtct cccggcaggt       900
     acgaccccaa gttccccgcg gcaacatccc tggttgctga catttggacc gtctcccggc       960
     aggtacgacc ccaagttccc cgcggcaaca tccctggttg ctgacatttg gtccgtctcc      1020
     cggcaggtac gaccccaagt tccccgcggc aacatccctg gttgctgaca tttggtccgt      1080
     ctcccggcag gtacgactcc aagttccccg cggcaacatc cctggttgct gaca            1134
//
ID   BEL-822_AA-I repbase;    DNA;    INV; 5927 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-822_;
KW   BEL-822_AA-I; BEL-822_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5927
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5927
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2171-2171 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           561..5846
FT                 /product="BEL-822_AA-I_1p"
FT                 /translation="MAKEEMLIHKRGLVRGKVTRIRNSLKKMEDDQQQVSL
FT                 PHIRVLSKNLDMHYSEYNQVQDEILSVCAPSGRGVHEEKYEEFEELFNDTS
FT                 FMIERLKDALAPVPIHAIVPAGQQVAEQQQVIVQQQALRAPLPTFDGKYEN
FT                 WPRFKTMFQDLMRRSTDCDAIKLYHLEKSLVGSAAGVIDSQTLQDNNYNQA
FT                 WQILEDRFENQRLIIDNHIRGLLNLKKMSKKSSKELRELIDECSRHVENLK
FT                 FMKQKLLGVSELFVVNILTAALDKETREHWESTLTHGELPKYDDTIECLKQ
FT                 RCLVLERCETANTSTVERPLVNSKVSALPKSILRASNAITSQNEIICELCN
FT                 GQHPNYKCMEFRNMTVPQRIAKVREANVCFNCLRKGHRYSNCQSERTCSKC
FT                 SSRHHTMLHLQEPSVAPEQPTPQVVLPQANVNSSSVPAPEPTESTTSSNAL
FT                 VNHVSRCKAFPAVKEVLLLTAKVNLLDDRGRSHFCRALLDCASQVCLISQA
FT                 MVKKLGKKTWPTNTEVFGVTGRQNTTQGIVVTVTSNYGEYHVNIPCLVMPT
FT                 VSGTIPTRLIDSKQWSFPADIELADPEFFVPSYVDLLIGNQFFFSLLKSGQ
FT                 LRIDDEHPLLLETVFGWVVSGPADVNSNPIVFSHAVTTKDLDELMQKFWAI
FT                 EEVPEASPHSTEEQEIEAHFAATHRRDETGRFVVRLPFRESFAELGNNRAL
FT                 ALKRFYMLEKRLEGDMQLKQEYADFISEYEALGHCQEVDENFDPVGQQCYY
FT                 LPHHAVFKPSSSSTKLRVVFDATAKSSRAASLNDVLQVGPTIQRDCFGILL
FT                 GFRMHRIAISGDLSKMYRQVRVDPRDTRFQRIFWRSNQTDPLRVLELTTVT
FT                 YGTASAPFLATRSLVQLAEDEQAEFPVAAEVVRFDFYIDDALTGAETEADA
FT                 IRLREDLQSLLARGGFDIRKWCSNSSAVMANIPEEDKERLVKIDDSNDTVK
FT                 TLGMLWDPYNDQFRFVSEILDDDNNEPITKRFVLSQMSKLFDPVGFVAPVI
FT                 VLFKMLMQTIWARKLEWTTPLPEDILQQWLHLRESLVFLNTIKIPRCLIPE
FT                 NVQWFELHGFADASKTAYGACLYLRSVNADHGVDCRLVCSKSRVAPLSEMT
FT                 IPRLELSAALLLARLVVKVIPLLRVPLRHIVLYSDSQIFLAWKKKPPGLLQ
FT                 LFVRNRIVEINQSTEDFAWEYIRSEDNPADIVSRGQQPLALSSNQKWWNGY
FT                 QALLQYDHQPAKYEVISDAELPELRAQAIVNLATIECLPVFNAFSSFRKLQ
FT                 RVVAYILRFAHNCRNKEQSERRLKQLTVSEMQVSLETIVRVIRRVDFATDM
FT                 ESVLSSEPPKRLASLCPIVENGILRVGGRLQNSSLPFDARHQMILPNHHQI
FT                 TEQIIRTLHEENRHVGPSGLLAIVRQNFWLLNGRSAVRKVTRSCIPCYRTK
FT                 PRKIQQLMGSLPDFRVTPAMPYEYSGVDYAGPMMVKEGKYRPKIVKGYIAV
FT                 FVCLVTKNIHLELVSNLTTEAFLAALDRFVNRRGLTRTILSDNATNFSGAA
FT                 SELHELYKQFQNEVTMSKINDLLLLREIEWRFIPPRAPNFAGLMEAAVKSV
FT                 KTHLKRTLQNATLTFEEFATVLSHIESILNSRPLYALSTDPNDPMPITPAH
FT                 LQLGRAIEPVPKPSHLDIKENRLSRWQYLNLLRDRFWKTWSKEYLSTLQTR
FT                 GKWTKTATNIVPGMLVLIIEDNVPPQAWKYGKIVKTYPGSDSLVRVADVKT
FT                 GTGILRRSLSKRSPLPIKDNEDLQRDAEITSASSDVPDFLLA"
XX
SQ   Sequence 5927 BP; 1691 A; 1367 C; 1409 G; 1460 T; 0 other;
     ttttggtcca atcgatccgg acgatcgcca tctttgaaaa tcgattccgg gagtgaaaaa        60
     agcgcctagt gatactgcct ggacatcccg cggtccgaaa gggatggaaa aagctgtacc       120
     atcgccttat tgagaagtaa agtgtagtga tagtattccc taccgaccaa gcgtgtcgag       180
     aagattcaaa gtgttgagtg cgtttctggt gagccaagaa acgacaagaa gaacaaaaag       240
     tattcagctg gtgagccagc gaagaattcc agtgactagt gaaaagcagc tctgtcaaca       300
     tcgccaaact ccgtgtggta cggtggtaaa tcaatcgatt ctgctggggc caaggtggtc       360
     tgtgtccagc tcatcacagg atagcgatcc cgtcgcttgt ccctactccg atgggtgatg       420
     tggcgaaagc tattcaatag tgaagaagaa gaagaagagg aagaacaacc aattcgaaag       480
     ccgtatagtg atctaacagt gaaagcagaa gtagaagagg aagaatcaga aaaaaagaaa       540
     gtgaatattc tcgtacaata atggccaaag aagaaatgtt gattcacaag cgcggcctgg       600
     tgcgtggaaa agttacccgt atccgcaaca gtttgaagaa aatggaagat gatcaacagc       660
     aagtgtcttt gccgcatatt cgcgtattgt cgaagaatct tgacatgcac tacagtgaat       720
     acaatcaagt tcaagacgaa attcttagtg tgtgtgcacc gtccggaaga ggagtgcacg       780
     aagagaaata tgaggagttt gaggaactct tcaacgacac cagtttcatg atcgagcgtt       840
     taaaagatgc attggcgcct gttcccattc acgccattgt gccagccggc caacaagtag       900
     ccgaacagca gcaggtaatc gtgcagcagc aggcactccg ggctccactt cctacatttg       960
     atgggaagta cgagaattgg cccagattta aaacgatgtt ccaagatctc atgcgccgtt      1020
     caacagattg tgatgccatc aaactctacc acttagaaaa atccttagtt ggtagtgctg      1080
     ctggagtgat cgattcgcag acgcttcagg ataataatta caatcaagcc tggcaaattc      1140
     tggaggacag atttgaaaac caacgactga tcatcgacaa tcacatccga gggctgctca      1200
     acctcaagaa aatgtcgaaa aagtcatcga aagagcttcg tgagctaatt gacgagtgca      1260
     gccggcatgt agagaatttg aagtttatga agcaaaagct gctgggagtg tctgagctgt      1320
     ttgtcgtaaa tattttaaca gcagctcttg acaaggaaac tcgtgaacat tgggagtcca      1380
     cgcttaccca tggtgaactg ccaaaatatg acgacacaat cgaatgcttg aaacaacgat      1440
     gccttgtcct cgaaaggtgc gagacagcca atacgtcaac agtagaaagg ccattggtaa      1500
     actccaaggt aagtgccctt cctaaatcga tactaagagc ttccaacgca atcacatcac      1560
     aaaacgaaat tatttgtgaa ttgtgcaatg gccaacaccc aaactataag tgcatggagt      1620
     ttcgcaacat gactgtacct caacgcatcg ctaaagtacg tgaggcaaat gtgtgcttca      1680
     attgccttag gaagggacac cggtatagta actgtcaatc cgagagaacc tgctcgaagt      1740
     gttcctctag acatcacacg atgcttcatc tgcaagaacc gtcagtggct ccagagcaac      1800
     caacgccaca agtagttttg ccacaagcca acgtaaacag tagcagcgtt ccagctccgg      1860
     aaccaaccga gtcaacgaca agttccaacg cattggtaaa tcacgtttct cgatgcaagg      1920
     cctttcccgc agtgaaagag gttttgctgc taacggccaa agtcaattta ctggatgaca      1980
     ggggtcgttc tcatttctgc cgtgcacttc tagactgcgc gtctcaagtg tgcttgatct      2040
     cccaggctat ggtcaaaaag ctgggtaaga aaacgtggcc aaccaacacc gaggtcttcg      2100
     gtgtcactgg ccgccaaaac accacccaag ggatagttgt gactgtaact tccaactacg      2160
     gtgagtacca cgtgaatatt ccttgccttg ttatgcccac tgtgagtggc accatcccaa      2220
     cgagattgat cgacagcaag cagtggagtt tcccagctga tatcgagttg gctgacccag      2280
     agtttttcgt accaagctat gttgatcttc tgatcggcaa ccagtttttc ttctccttgt      2340
     taaaatctgg tcaactgaga atcgacgacg aacatcctct actgctggaa accgttttcg      2400
     gctgggtagt gtcaggacca gcagatgtca acagcaatcc tatcgttttc tcccacgccg      2460
     ttaccacaaa ggatttggac gaactgatgc aaaaattctg ggcgatcgag gaggtcccag      2520
     aagcttcacc gcattcaacg gaagaacagg aaattgaggc ccatttcgca gctactcacc      2580
     gtcgtgacga aacaggccga ttcgttgtgc gactcccgtt tcgagaatct ttcgctgaac      2640
     ttggtaacaa tcgagctttg gcactgaagc ggttctatat gctcgaaaaa cgtttggagg      2700
     gtgatatgca gttgaaacag gagtatgcag atttcatttc cgaatacgag gctcttgggc      2760
     attgccaaga ggtggacgag aattttgatc cagttggcca acaatgctac tatctgccac      2820
     accacgcggt tttcaagcct tcgagttcat caaccaaact ccgtgtagtg tttgacgcta      2880
     ccgctaaatc atcgagggcc gcctccttga acgatgtgct tcaggttggt cccaccatcc      2940
     agcgggattg ttttggcatc ttgctcggat ttaggatgca tcgcattgcc atcagcggtg      3000
     acctttcaaa aatgtatcga caagttagag ttgatcctcg tgatactcga ttccagcgca      3060
     ttttctggcg tagcaatcaa accgatccat tacgtgtcct ggagctgact accgtcactt      3120
     atggtactgc atcagctcca ttcttggcga ccagatcgct ggtacagctc gccgaagatg      3180
     aacaagcgga attcccagta gcagcagaag ttgtacgttt tgacttttac atcgacgatg      3240
     ccttgacagg tgcagaaact gaagccgacg ccatccgtct gagagaggac ttgcagagct      3300
     tgctggccag agggggattc gacatcagga agtggtgttc gaattcatca gcagttatgg      3360
     caaatatacc tgaggaagac aaagaaaggt tagtaaaaat agatgactcc aacgacacag      3420
     tgaagacgtt aggaatgctg tgggacccgt acaacgacca atttcgattt gtttctgaga      3480
     ttctcgatga tgacaataac gagccgatca caaaacggtt tgttctgtcg cagatgtcca      3540
     agttattcga tccagttggt ttcgtcgcac cagtaatcgt gttgttcaag atgcttatgc      3600
     agaccatttg ggcgaggaag ttggagtgga cgactcctct accggaggat atcttgcagc      3660
     agtggcttca tttgcgtgag tctttggtgt tcctgaatac aatcaagatc ccaaggtgtt      3720
     tgattccaga aaatgtacaa tggttcgaac tccatggctt tgcggacgct tcgaaaacag      3780
     catatggagc ctgtctttat cttcgttctg tgaatgcgga ccacggcgtc gattgtcgat      3840
     tggtatgcag caaatcacga gtagcaccac tttctgaaat gacaattcct agattagagt      3900
     tgagcgcagc attacttctt gcccggttgg tagtcaaagt gatcccactg ttaagagtac      3960
     cgttacgcca catcgtactg tattcggata gtcaaatatt cttggcatgg aagaagaagc      4020
     cacccggcct actacagcta tttgtgcgta accgaatcgt cgaaatcaat caatcgacag      4080
     aagattttgc ctgggaatat attcgatcgg aagataatcc agccgacatc gtttccagag      4140
     gtcaacaacc gttggcatta agcagtaacc agaagtggtg gaatggatac caagcattgc      4200
     tacagtacga ccaccagccc gctaaatatg aagtaataag tgatgcagaa ctgcctgagc      4260
     tgagagccca agcgattgtc aacttggcga cgatcgaatg tttaccagtt tttaatgcat      4320
     tcagttcttt ccgaaaacta caaagagtag tggcgtatat tcttcgtttc gcacataact      4380
     gcagaaacaa agaacaatcg gaacggcgtt tgaagcagtt gaccgtttcg gagatgcaag      4440
     tttctttgga aacaatcgta cgagtcattc gacgtgtgga tttcgcaacc gacatggaga      4500
     gtgtgctttc gagcgaacca cctaagcgac ttgcctcgct ttgtccgatc gttgagaacg      4560
     gaattctacg agtaggggga cgtttgcaga actctagtct tccattcgat gctcgacacc      4620
     agatgatact tccaaaccat catcaaataa ccgaacaaat catccgtaca ctacacgaag      4680
     aaaatcggca tgttggacca tccggtttgt tagccatcgt tcggcaaaat ttctggttac      4740
     tgaacggccg ttcagccgtt cgaaaggtga cacgctcttg tattccatgc tacagaacaa      4800
     aacctagaaa aatccagcag ctgatgggaa gtcttcccga ttttcgagta accccagcga      4860
     tgccatacga atatagtgga gtagactatg cagggccaat gatggtgaaa gaaggaaagt      4920
     atcgaccaaa aattgttaag ggttacattg cagtatttgt atgccttgta acaaaaaaca      4980
     tccatttgga gcttgtgtcc aacctcacta cagaggcatt tctggcagct cttgatcgat      5040
     tcgtgaatcg tcgaggattg acacgaacga ttctgtcgga caatgcaacc aactttagtg      5100
     gagctgcttc tgaactgcat gagttgtaca agcagttcca gaatgaggtc actatgagta      5160
     agatcaatga cctcttgctt ctacgagaaa ttgaatggcg atttatacca ccacgtgcgc      5220
     caaactttgc cggtttgatg gaagctgcag tgaaaagtgt caagactcac ctcaagcgca      5280
     cgctacaaaa cgcgaccctt acattcgaag aattcgccac agtacttagc cacattgagt      5340
     caatccttaa ctcacgtcct ctctatgctt tgtctactga tccaaatgat ccgatgccga      5400
     ttacaccagc ccatcttcag ttggggcgtg ctatcgaacc agttcctaaa ccgtcccatc      5460
     tggatatcaa agagaaccgc ttgtcaagat ggcagtacct aaacttgctc agagatcgat      5520
     tctggaaaac ctggtcgaag gagtacctgt ctactttaca aactcgagga aagtggacaa      5580
     agacagcaac gaatattgtt cccggtatgc tagttttgat tatcgaggac aacgtgcccc      5640
     cacaagcctg gaaatacgga aaaattgtta agacctaccc tggaagcgat tcgcttgtac      5700
     gagtcgctga tgtgaaaact ggaactggaa tcttgaggcg gtccctttca aaacgttctc      5760
     cgctgcccat caaggataat gaggaccttc agagggatgc cgagatcacc agcgcttcat      5820
     cagatgttcc tgatttcctt cttgcttgag attcttgaag ggaattcttc tgaaaaccag      5880
     tgtcctgtct tcaaccttga aaccttcggt cttcagccgg gggagta                    5927
//
ID   BEL-822_AA-LTR repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   05-DEC-2018 (Rel. 25.07, Created)
DT   05-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-822_AA-I;
KW   BEL-822_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-431
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-431
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2038-2038 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 431 BP; 125 A; 88 C; 93 G; 124 T; 1 other;
     tgtccgatct tcattcggac agttttttaa atgataattt gacaccgaaa aatcaacgct        60
     tgcctcgatg tgtggagagt ttgctttcag tgggctgacg cagcgccgct gccaacttga       120
     tgaaatcgaa acgtgacgct gcaaagaacg gaaggacgaa agggacgacg agaaaaaacg       180
     cgggcaaacg gatatcgaag tgacggtgtg tgaaaaattc attcttcaag tagaccgcgc       240
     ggtgttaaca cgaaacctta ccttgttacc ttttcataaa tatagttaat tgttgaagtt       300
     aagttaacat tttccaagtg ctttatttcc ggaatcgaaa ttccttgcta ttagtgttac       360
     agtccactaa attcttcgtg ttttccacct cmaataaacc atctcgtgtt ggtctttccg       420
     aagatgcaac a                                                            431
//
ID   BEL-823_AA-I repbase;    DNA;    INV; 6015 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-823_;
KW   BEL-823_AA-I; BEL-823_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6015
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6015
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2172-2172 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..6014
FT                 /product="BEL-823_AA-I_1p"
FT                 /translation="MPEESEAMGNEGRNCMLCEDHDSADDMVQCDNCDLWA
FT                 HYRCANVTEAVKENPWVCPKCTNSLQVPKNPRKPTTRKTSGKKGSRSDTGS
FT                 ESGKVDAIVASFEESLAQLQQEKGDRAKQLDEERILHEKRLEMEREMMEKK
FT                 RLQKKQMLDKQLAQEQQLLEQQLRDEQEFLQRRQELRNRFHKLKLDLSQQF
FT                 DQPSESDDDGESDAGAAAKAKDWLDSMNNDPRGAYPKSKGVPEIAVPSSAV
FT                 KQSVGNYKQNADLEHPRPAKLNEPGSKQATIIGQHMHQNSPHQQHQASVNT
FT                 PCEVLELLQCPDLTAHEETVLRNILNRRRQEGNDQVQDIGRGPTQEQLAAR
FT                 QAVSKHLPIFRGEPEVWPLFISCYEYTTAACGFTNTDNLKRLQDSLQGLAK
FT                 EAVQSRLLMPDSVPEVIEDLRKLFGNPEKLLKTLVAKVRKAQAPRLDKLET
FT                 FLYFGITVKQLCDHLEAAGLHDHLSNPMLVQELVNKLPPEYKLDWVRFKRG
FT                 KFGTPLRNFTDFINEIVSEVSEVADFTGAEQSVSSSPWKGKPKKKEFVNTH
FT                 NTQPNRSASFQTEMQQKSRKPCVVCNRNDHKIRYCDDFAKLGISERLGIVE
FT                 KFKLCQLCLNDHGKAQCTFKGRCNVPNCGKRHHTLLHRAVECVQLALVENN
FT                 THIQSFRSVIFRIVPITLYYNDQTVQTAAFLDEGASTTLVEDSIADLLEAD
FT                 GVLEPLEVTWTANMKRYEETSRKIDLQISARGSSNRYELKEARTVNELVLP
FT                 KQNDTIEEIIKRYRHLEGLSIIDCGKDVPRILIGLDNLHLFAPLESKVGNF
FT                 GEPIAVRSLLGWSIYGPNQQRTSPKACVHYHAIQPISNQYLHDLLRTQYTI
FT                 ESTHDQAEVLPETKDVLRAREVLERTTKRIGDRFETGLIWSHEGVTFPDSY
FT                 PMALRRMMALERKLAKDQWLQTEVHQQIEAYVQKGYSHQATKHELSGADNS
FT                 KVWYLPLNVVLNPRKPNKVRLVWDAAATVAGVSLNTKLLKGPDLLTSLPAV
FT                 ISKFRERPIAIGGDIREMYHQVHIRDADKQAQRFLFRFDYTQPPTVYIMDV
FT                 ATFGATCSPCSAQFIKNLNAMEYSSQFPDAASAIVDRTYVDDYFDSLDSEE
FT                 EALRRAKEVRFINSKAGFEVRNWTSNSSLVLSGIGEENSNGLVHFHLDKAT
FT                 DNERVLGVIWNPHLDTLSFAVPSGIEISAERPEKPTKRIILSSVMALFDPL
FT                 GLLAPFTTLGKMLIQDLWRTGCDWDQAVDEESFKKWKSWIGLLPEISKLKI
FT                 PRSYFGTVQSKDFGPVQLHVFCDAGESAFGCAGFLRIEINGEIKCSLVMAR
FT                 SKVAPLKQLTIPRLELEAAVLGSRLSHTIKKNLSLQINQTFFWTDSQTVLS
FT                 WLTSDQKRYKQFVCFRIGEILSLTKLSEWRWVPSRMNIADSLTKWKSDFGL
FT                 SPEWFSGPNFLYQLQELWPSKKLPPANIKIELRAVHLFHDIILPDKLIDAT
FT                 RFSKWNVLIRSIASALRFISNCRRKANGEPIETLKPTSSQRDQIIAEMHSV
FT                 RVPLKQSEYQWAEKVLWRFTQSNVFGDEIKTLRKNLDREPSKWISLEKSSP
FT                 LYKLTPLLDNEMVLRVEGRCDKAGHLPFDMRFPVILPRDGAVTELLVRYYH
FT                 ETFGHAFRETVKNEIKQRFYIFNLTSVLAKIERSCIWCKVHKNRPNVPRMA
FT                 SIPVQRLTPYKRPFTFVGIDYLGPVEVSVGRRSEKRWIVLFTCLVVRAIHL
FT                 EVAYNLTAQSCIMAIRRFICRRGPAAEYFSDNGTNLKAASKEFVHQLQVIR
FT                 NECAEEFTSARTKWHFNPPAAPHMGGIWERMVRTVKNVMTVLNDGRRLTDE
FT                 ILHTSLAETEDMVNSRPLVYAPQESQYESLSPNHFLRGIAANEPHEVLPPT
FT                 DPASALRDTYQRSVQLSNNLWERWLKEYVPNLNRRSKWFDDSTPLKKGDLV
FT                 FVVDGGRRKAWTRGIVEEPIVSIDGRIRQALIRTNYGIVRRATANLAVLEI
FT                 DGSNAVPDDNSGPGLRAGD"
XX
SQ   Sequence 6015 BP; 1806 A; 1391 C; 1466 G; 1352 T; 0 other;
     aacttaaaga tcaacattcg gagactcttg aaatgccaga ggaatcggag gcgatgggaa        60
     atgaaggtcg caactgtatg ttgtgcgagg accatgatag cgcagacgac atggtccaat       120
     gcgacaactg tgacctgtgg gcccactatc gttgcgctaa tgtgaccgaa gctgtcaagg       180
     aaaacccgtg ggtgtgcccg aaatgtacca actccttgca ggtaccaaaa aaccccagga       240
     agcccacgac gaggaagact tccggtaaaa aaggtagtag aagcgatacc gggtcggaat       300
     ctgggaaagt ggatgcaatc gtcgctagct tcgaagagtc gctggctcag ttgcaacagg       360
     aaaaaggaga cagagcgaaa cagctagacg aagagagaat ccttcatgaa aagcggcttg       420
     aaatggagcg tgagatgatg gagaaaaaac ggttgcagaa aaagcaaatg ttggataaac       480
     agcttgcgca ggaacaacaa ctccttgagc aacagcttcg ggatgaacaa gaattccttc       540
     aacgacgaca ggagcttcgc aaccgattcc acaaactcaa gcttgacctt agtcaacaat       600
     ttgatcagcc aagcgaatcg gatgatgatg gagagtcaga tgctggagcc gccgcaaaag       660
     caaaagattg gctggattcg atgaataatg atcctcgtgg tgcgtaccca aaaagtaaag       720
     gagtaccgga aatagcagtt ccaagttcag cagtgaagca atccgtagga aactacaagc       780
     agaacgccga tttggaacat ccaagacctg cgaagcttaa cgagccgggg tcgaagcaag       840
     ccaccatcat cggtcaacat atgcaccaga attcacctca ccagcaacat caggcatcag       900
     ttaacactcc atgcgaagtt ctggaactac tgcagtgccc cgatttgaca gcacatgagg       960
     aaactgtcct cagaaatatt ctgaatcgta gaagacagga aggtaacgat caagttcaag      1020
     acatcggccg aggtccgacc caagaacagc tagcagcccg acaagctgtc tctaaacatc      1080
     ttccgatatt tcgcggggaa ccagaggtat ggcctctatt cataagctgc tatgaatata      1140
     cgactgccgc atgtgggttc acaaatacgg acaacctgaa aagacttcag gacagccttc      1200
     aaggacttgc aaaagaagct gtacaaagcc gacttctaat gccggattcg gtccccgagg      1260
     taatagagga ccttcgcaag ctattcggaa acccagaaaa gcttttgaaa accctggtgg      1320
     caaaagttcg taaggcacag gctcctcggt tagacaagct cgagacattc ctatacttcg      1380
     ggatcacagt caaacaactc tgcgatcatc tcgaagcagc cggattgcac gatcacttga      1440
     gcaacccaat gctcgtgcaa gagctcgtga acaaattacc gccagaatac aaactggact      1500
     gggttcggtt caaacgcggt aaatttggaa caccgctaag gaacttcact gatttcatca      1560
     atgagattgt gtcggaagtc tctgaggtag ctgacttcac cggagcagag caatctgtat      1620
     ctagttcgcc atggaaagga aaaccaaaga aaaaggaatt cgtcaacact cataatactc      1680
     aaccgaaccg gtctgccagt tttcaaacgg aaatgcaaca aaaatcgaga aagccgtgtg      1740
     tcgtatgtaa tcgaaacgac cacaaaattc gatactgcga tgatttcgcc aagcttggca      1800
     tcagtgaacg attaggaatc gtcgaaaagt tcaaactgtg tcaactctgc ctcaacgatc      1860
     acggaaaagc gcagtgtacg ttcaaaggac gttgtaacgt gcctaattgt ggtaagagac      1920
     atcacactct gttacatcga gcggttgaat gcgtccaact agctttagtg gaaaacaaca      1980
     cccacataca atcctttcga tcggtgatat tccgcatcgt tcccatcacg ttgtattata      2040
     atgatcaaac cgttcaaaca gcagcgttcc tcgatgaagg cgcgtcgaca acgctagttg      2100
     aggactcgat cgctgatttg ttggaagccg atggtgtttt agaaccacta gaggttactt      2160
     ggacagcaaa tatgaagcga tacgaagaaa catcgcgaaa aatcgatctt caaatctcgg      2220
     caagagggtc gtcgaatcgg tatgagctga aggaggcgcg tacggtgaac gaactagttc      2280
     tgcccaagca gaacgataca atcgaggaga tcatcaagcg ataccgtcat ttggaaggac      2340
     tatcgatcat tgattgtggc aaggacgttc cccgcatatt gatcggtctg gataatcttc      2400
     atttgtttgc tcctctggaa tcgaaagtgg gcaatttcgg agaacctata gcggtccgtt      2460
     cactccttgg atggtcaata tatggtccaa atcaacaacg aacttcaccc aaagcatgcg      2520
     tacattacca tgcgattcag ccgatcagca atcaatatct ccacgatctg ctaagaacgc      2580
     aatatactat tgagagcaca cacgatcaag cagaagtgtt accggaaacg aaggacgtcc      2640
     tacgagccag ggaagttcta gaacgcacca ctaaacgcat cggagaccgt tttgaaacgg      2700
     ggctgatctg gagtcacgaa ggcgtaactt ttccagacag ctacccgatg gccctgagac      2760
     gaatgatggc gctagaaaga aagcttgcta aggaccaatg gctccaaacc gaggtgcacc      2820
     agcagattga ggcgtacgtt cagaaaggat actcccatca ggcgaccaaa catgagcttt      2880
     cgggtgcaga caattccaag gtttggtacc tcccgctgaa tgtagtcctg aacccgagaa      2940
     agccaaacaa agtgcgattg gtgtgggatg cagcagcgac tgttgcaggc gtttccctta      3000
     atacaaaatt attaaaaggc ccagatcttc tcacttcact accggcagtg atcagcaaat      3060
     tccgagaacg gccgatcgca atcggtggcg acatacgcga aatgtaccac caggtacaca      3120
     ttcgagatgc cgacaaacaa gcgcaacggt tcttatttcg ctttgattac acgcaacctc      3180
     caacggtcta cattatggat gtagccacct ttggggcaac atgttcccct tgttcggctc      3240
     aattcataaa gaacctaaat gccatggagt attcgtcgca atttcctgat gctgcttctg      3300
     caatcgtgga ccgaacttat gtggatgact actttgacag tctagactcc gaagaggagg      3360
     ccctacgaag ggccaaagaa gtaaggttta tcaattcgaa agccgggttc gaggtcagaa      3420
     actggacatc gaattcgtca ttagtactca gtggtatagg agaggaaaat tcgaatggat      3480
     tggtacactt tcacctagat aaggcaaccg ataatgaaag agtactaggc gttatctgga      3540
     atccgcatct agatactctg tcgtttgcag ttccatcagg aattgaaatt tcagcagaac      3600
     gtcctgaaaa gccgacaaaa agaataatcc ttagctcggt aatggccctc ttcgacccat      3660
     tgggcctgct agctccattc accacattgg gaaagatgct tatccaagat ctctggagaa      3720
     ctgggtgcga ctgggatcaa gcagttgacg aagagtcgtt caaaaagtgg aaatcatgga      3780
     ttgggctgct tccagaaatc tccaagttga aaatacctcg tagctacttc ggaacggtgc      3840
     aatccaagga ttttggaccg gtgcaactgc acgtattttg tgatgcaggc gaaagcgctt      3900
     tcgggtgtgc cggattcctg cggatagaga tcaatggaga aattaaatgt tccttagtga      3960
     tggcgcggtc gaaagtcgct cctctgaagc aactcaccat ccctcgccta gaactggaag      4020
     cagctgtatt gggctcgcgc ttgtcacaca caatcaagaa aaatttgtct ctccaaataa      4080
     atcaaacttt tttctggact gactcccaaa ctgtcttgtc gtggctgacg tcggatcaaa      4140
     agcgctacaa acaatttgtt tgcttcagaa tcggagagat tttaagccta acgaaactgt      4200
     ccgaatggag atgggtaccc tcgaggatga acattgctga tagcctaaca aaatggaaga      4260
     gtgattttgg tttgtcaccc gagtggttta gcggaccgaa ctttctctat caactccaag      4320
     aactatggcc atctaagaaa cttccgccgg cgaatataaa aatcgaattg cgagctgtac      4380
     atctgttcca cgacatcata ctcccggata agctgatcga tgcaacgaga ttttcaaaat      4440
     ggaatgttct catcagatcg attgccagcg cactgcggtt tatttccaac tgtcgtcgga      4500
     aagcaaatgg ggaacccatc gaaacgctga aaccaacatc aagtcaacga gatcaaataa      4560
     tcgccgagat gcattcggtt cgagttccgc tgaagcagag cgagtatcaa tgggccgaga      4620
     aagtgctatg gagattcacg caaagtaacg tctttggtga cgaaattaaa acgcttcgga      4680
     agaatctgga tcgcgaaccg tccaagtgga tttctttgga gaagagtagt ccgctttata      4740
     agctgacacc gctcttagac aacgaaatgg tgctgcgagt agaaggacga tgtgacaaag      4800
     ccggacattt gcctttcgac atgcggtttc cagtaatcct tcctagggac ggagcagtca      4860
     ccgaattgct agtacgttac taccatgaaa cctttggtca cgctttcaga gaaacggtaa      4920
     aaaatgaaat taagcaacgc ttctatatct tcaatctgac ttcggtgctg gcaaagatag      4980
     agcgaagttg tatctggtgc aaggttcaca aaaatcggcc aaatgtaccc agaatggcct      5040
     ctattcccgt gcagcgtcta acaccgtaca aaagaccttt cacatttgtt ggtattgact      5100
     accttggacc agtagaagtc tcggtaggcc gtcgctcaga gaaaagatgg atcgtactat      5160
     tcacttgttt ggtggttcga gctatccacc ttgaagtggc ctataacctg actgcgcaat      5220
     cgtgcataat ggcaattcga cgcttcattt gccgtcgagg acctgcggca gaatattttt      5280
     cggacaacgg cactaatctt aaagcagcta gtaaggagtt tgtccatcag ttgcaagtaa      5340
     tacggaacga atgcgctgaa gagtttacaa gtgcccggac aaagtggcat ttcaatcccc      5400
     cggccgcacc ccacatgggg ggcatatggg agcgaatggt caggactgtg aagaacgtga      5460
     tgacggtcct aaacgatgga cgtagattaa ccgacgaaat tctgcacaca agcctagctg      5520
     aaactgaaga catggtaaac agccgtccac ttgtctatgc tccacaagaa tctcagtacg      5580
     aatcgctgtc tcctaaccat tttctacggg gtatagctgc caacgagccc catgaagtac      5640
     ttcctcctac tgatcctgct agtgcgctac gtgacacgta tcagcgctca gtacagctgt      5700
     ccaacaattt gtgggaacgc tggcttaaag agtatgtccc gaacttaaat cgacgcagta      5760
     aatggtttga tgactcgaca ccgctaaaga aaggtgatct agtattcgtt gtcgacggag      5820
     gccgacgtaa ggcgtggaca agaggaatag ttgaagaacc gatagtgtcg attgatggga      5880
     ggattcgcca agcactcatc aggacaaatt acggtatagt tcgacgggca actgccaatc      5940
     tagcagtact ggagatagac ggaagtaacg ctgttccaga tgataactcc ggaccaggat      6000
     tacgagccgg ggatg                                                       6015
//
ID   BEL-823_AA-LTR repbase;    DNA;    INV; 682 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-823_AA-I;
KW   BEL-823_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-682
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-682
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2039-2039 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 682 BP; 232 A; 120 C; 116 G; 212 T; 2 other;
     tgttcgaaac atcggaacaa ccctgtatcg ctgagattat tgctaaccct ttgggaaata        60
     tagaccatcg cgatccaacg cagaagcagc gtgtgtcatc ggagttgtca gcagaaacgc       120
     gagtagaagg cacagcagaa tgacagaaca aaagtggaat taatgctatt gagaagacac       180
     gtttatggag tttgtaaaat ttcccaaatt tgctgaattt attattctat ttcctattat       240
     tttaagcgca attagtgaca cctaagttmt tatttttttc actgtgtgag ttagcaattg       300
     aatttgttga aattacggct aaaataatca taaattgttt attcctagat gcgctaaaga       360
     atttgataac ctaaaatcac tagtgacaaa gattaaatca ctagctaatt agtaagtaag       420
     ttatggaaca gcttcgaaat tagtttaaat actcaaaata ccctatttac ttaatttagt       480
     tcttgaatcc tacgaagaaa ccgtaaattc ccagtgcaag atattccttc tggttacttc       540
     ttcaagacag aagaaaaact tgatgtaagt ctctgataac cctagcaaaa tcctacgaaa       600
     aacctaataa aacwtatttt ttagctttaa gctgtcatca ctaacgactg ctttgaggac       660
     ggtttgcatt tctatccgaa ca                                                682
//
ID   BEL-824_AA-I repbase;    DNA;    INV; 5860 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-824_;
KW   BEL-824_AA-I; BEL-824_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5860
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5860
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (06-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1198
FT                 /product="BEL-824_AA-I_1p"
FT                 /translation="MEQETLKDQAASSMEKDATHQTPKPTGSVRVPRPLIM
FT                 TSSSESNPFHGFSQWEITSDPETAKQLKAVFRQRHQIYQKVVKMEKVISDR
FT                 NPKSLAQLNVMARNLAAAYTEFSSFHSQVMALIPDQDVDKQEDEYTTFEEL
FT                 YNFVSEVVEELILEAKDAAVVTPTERQLIIQQQPLKAPIPTFDGSYAGWPK
FT                 FKAIFNDLMSKSGDSDALKLYHLDKALVGSAAGILDARTINEGNYEQAWRI
FT                 LTERYENERVIVESHVRGLFSLNE"
FT   CDS           1111..5832
FT                 /product="BEL-824_AA-I_2p"
FT                 /translation="AGMANTDRAVRERKSNRRVPRSWIIFAKRMTSESSKD
FT                 LRALVDEASRHVENLRFLKQELLGVSEHMVVFLISNALDKSTRKAWESTLK
FT                 RGELPKYEPTVKFLKNRCQILENCEAATQSSASQPIKPKPTFATSKPPVQK
FT                 CYASAVNPSKSSVTSTDRCVFCEGQHRNFQCDVLGSLTTAERLEKVRTAGV
FT                 CFNCLRKGHQSKECPSSNHCKKCQKHHHTLLHGDKEGSVKQDVKSNVSIPK
FT                 PAQEPATSAPQPVPEETRTVSTSCSCNNSQPAETVLLLTAVVHLADSRNQL
FT                 HPCRVLLDSGSQVNFISEKMANSLGLPKQPANVEITGISAIRTIARERIKV
FT                 KLHSRDYAFHATMECLITPKVTGTVPTAKIDVSDWELPDGIMLADAEFHKP
FT                 SQVDMLIGAAHFFDLLKPGQIQLAPHLPQLRDSHLGWVVAGVINDRDSPVR
FT                 TPVHSNVASITDIEKLMYQFWQIEEVPNVSKHSAEEQFCETHFQSTHRRDS
FT                 SGRFVVKLPFKENVNQLTDCREIALKRFLLLEKRFLRDPELKEQYVKFIRE
FT                 YELLNHCHQINEANDPKDKQSYYVPHHAVLRPTSSSTKCRVVFDASAKPSP
FT                 SALSLNDVLHVGPVVQSDLFTIAIRFRKYKFVFSADITKMYRQVLLVQDDT
FT                 CYLRIFWREDPSLPLRVLELNTVTYGTASAPFQATRCLNQLADEDSRIPPD
FT                 VVRIIKEDFYVDDVLSGANTIETAVEYYEQLKSSLARGGFPLTKWCSNSEE
FT                 FLQNIPEEDQEKQQAIPVYEANELIKLLGLTWDPKADTFHIASPSISSSAA
FT                 KPATKRTIYSEVAKLFDPLGLFSPVIVVAKLLVQHLWKTKQGWDEPVEKEC
FT                 QQKWNELQQALPQLDLIHVPRRVTSDDAVCFELHGFADASTVAYGACCYMR
FT                 SVFSDGSAKLVLLASKSKVAPLHDLSIPRKELCAALLLTRLLQKVIPAMQM
FT                 EFREVSLWSDSTIVLAWLKKPLEQLQTFVRNRVAEICSNTADYQWKYVSSK
FT                 NNPADIVSRGQLPEALCQNRLWQHGPEFLACSNYEIEVVDSVLPEPLPEMK
FT                 TVVAAVVKIDSAVFPFMYDCSDFRKVQRIMAYVRRFVENCRKKNPLQRVKK
FT                 VYLTVCELRQACDDIFRVVQHKHLADEIKLVSSGESSKRIGNLRPVFINGL
FT                 LRVGGRLDKSALPFESKHPIILPDKDPIVRMYVRTVHEELLHIGQTGLINA
FT                 LRQRYWLLNSRSTVRQVTRSCVRCFRTSPVGTTQLMGDLPPTRVNPSPPFA
FT                 VTGIDYAGPIWIKEGKYRPKIVKAYIAVYVCMATKAIHLEAVTDLSTNAFL
FT                 ASLKRFVSRRGLVQRLYSDNATNFRGAHHEMNELFKQFQDQKAIDDIHQFC
FT                 QTREIEWHFIPPDAPEFGGLWESAVKSAKTHLKKIVGNSKLTFEELATVLA
FT                 EIEAVLNSRPLFAISNDPADSKVITPAHYLIGRPLVAPAEPSLEDVNANRL
FT                 DRWQHLQVMRDHFWRAWSRDYLNTLQPRKKYLRTTPNIPVGTIVLLHEKTQ
FT                 PPLSWKLGRVSAVYPGDDGLVRVVDVFSNGSTYRRPITKVSILPIEDNLPE
FT                 ATPREEC"
XX
SQ   Sequence 5860 BP; 1581 A; 1411 C; 1464 G; 1404 T; 0 other;
     taaattggtc cgtaacgaac cggatagcag cggacatttc gcgaaaaagc tgtcctgtcc        60
     agcttagtgc tatgtgaaaa agtgggttca gccttcccac cgtgaaaaag cgcatttcca       120
     acacgtccgt aaacgtgttc aaacttgttc cgacaagttt gatgtgtgtg tgtgaaacat       180
     ttcacaaact ttgccgcttg tccgatccta ttcggcaagt ttctacttcg tcgatgaaaa       240
     agctccgtcg cgacgagtgt cgttcgcgtg tgtaagtgga agcgaaagct tcagaaaaaa       300
     gcttcaagcc gacgaaagcg ttcgtccaat ttgacattga cattcgttcg ccgcgaagtt       360
     gaaacgtacg tcgcgcttcc gcgtagtgat aaaaacaata aacatggagc aggaaacctt       420
     gaaggatcaa gcagcctctt caatggaaaa ggatgcgact catcagaccc cgaaaccgac       480
     aggatccgtg agggtgccaa gacccttgat tatgacatcg tcgtcggaaa gcaacccctt       540
     ccatggattc agtcagtggg aaatcaccag cgacccagaa accgcaaagc agctgaaagc       600
     agtattccgg cagcgtcacc agatttatca gaaagtcgtg aagatggaga aagtgatttc       660
     ggatcgcaac ccgaaaagtt tggcgcagct gaatgtcatg gctcggaatc tggccgcagc       720
     gtatacggag ttcagcagtt tccatagcca ggtaatggct ttgattccgg atcaagatgt       780
     tgacaaacag gaggatgaat atacgacgtt tgaagaactg tataatttcg tctccgaagt       840
     tgtcgaggaa ctcattttgg aagccaaaga tgcagcagtt gttactccca ccgagaggca       900
     gctaattatc cagcaacagc cgttaaaagc gccaattcct acctttgacg gtagctacgc       960
     tggatggccc aagttcaaag cgatattcaa tgacctaatg tcgaagtctg gtgatagtga      1020
     cgccttgaaa ctctaccacc tggacaaggc gttggtcgga tccgccgcag gaatattgga      1080
     cgcaagaaca atcaatgaag ggaactatga gcaggcatgg cgaatactga ccgagcggta      1140
     cgagaacgaa agagtaatcg tcgagtccca cgttcgtgga ttattttcgc taaacgaatg      1200
     acatcggaat cttcgaagga tcttcgtgcc ctggttgatg aagcttcgcg acatgtggaa      1260
     aatctccgtt ttctgaaaca ggaacttctg ggtgtgtccg agcacatggt agtctttctc      1320
     atctccaatg cattggacaa atccacccgg aaagcttggg aatcaacgtt gaagagagga      1380
     gagttgccga agtacgagcc aaccgtcaaa ttcctaaaga atagatgcca aattttggag      1440
     aattgcgaag cagccactca gtcatcagcg tcacaaccga tcaagccgaa gcctacattt      1500
     gccaccagca agccaccagt tcaaaagtgc tacgcgtctg ctgtaaaccc ttcgaaatca      1560
     tcagtcacca gcacagatcg atgtgtattt tgcgagggtc agcatcgaaa tttccagtgt      1620
     gacgtcctag ggagccttac aacagcggag agacttgaga aggtccgaac agccggtgtg      1680
     tgcttcaact gcctcaggaa ggggcaccag tcgaaagagt gtccgtcatc gaatcattgc      1740
     aagaaatgcc agaagcacca ccacacgttg ttgcatggag acaaggaagg aagcgtgaaa      1800
     caagatgtca agtcgaatgt gtccattccg aagccagcac aagaacctgc cacgtcggcg      1860
     ccacagccgg ttccagagga aactaggacg gtttctacat cgtgctcctg caataactct      1920
     cagccagcgg agacagtact tctgcttacc gcggtggtac atttagcgga ctcaaggaat      1980
     cagctgcatc cgtgtcgagt tttgctcgat agtggctctc aggtcaactt tatttcagaa      2040
     aagatggcta actcgcttgg tctaccgaag caacccgcta acgtcgaaat caccggaatc      2100
     agcgccatcc gaacgattgc tcgtgaaagg attaaggtca agctccactc tcgtgattat      2160
     gcgttccatg ccacaatgga atgcctgatt acgccgaagg taacaggaac cgtgccgaca      2220
     gccaagatcg atgtgagcga ttgggagctg cccgatggaa ttatgttggc cgatgccgaa      2280
     tttcacaagc catcacaggt ggacatgctt attggtgccg cacatttctt cgatctgcta      2340
     aagcctggtc aaatccaact tgcgcctcat ctaccgcagc ttcgtgacag ccatctcggt      2400
     tgggtcgtgg ctggcgtgat aaacgacaga gattctccag tcaggactcc tgttcactcc      2460
     aatgtggcat caatcaccga tatcgagaag ctgatgtacc agttttggca gattgaagag      2520
     gttcccaacg tgtccaagca ttcagccgaa gagcagttct gtgagaccca ttttcagtca      2580
     actcatcgcc gagatagttc cgggagattc gtggtgaagc ttcccttcaa ggaaaatgtg      2640
     aatcaactga ccgactgccg agagattgcc ttgaagcgtt ttctactgct ggagaagcgt      2700
     tttctgcggg accctgagct caaagaacag tacgttaaat tcattcggga gtacgagttg      2760
     ctgaatcatt gccatcaaat aaatgaagcc aacgacccga aggacaaaca gagctactat      2820
     gtgccgcacc atgccgtgct gcggcctaca agttccagta ccaagtgtcg tgtcgttttc      2880
     gatgcgagtg caaagccgtc gccgtctgcg ttgtcgttga atgacgtcct ccatgtagga      2940
     ccagttgtcc aaagtgattt gttcaccata gcgattcggt ttcgtaagta caaattcgtg      3000
     ttttccgccg atatcaccaa aatgtaccgg caggtgttgc tggtgcagga cgacacgtgt      3060
     tacttgagaa ttttttggag agaagaccct tcgttgccat tgcgcgtcct ggagctgaat      3120
     acggttacgt atggcacagc ttcagcgcca ttccaagcca ccagatgcct caaccagctc      3180
     gccgatgaag attccaggat ccctccagat gtagtcagaa tcattaagga agacttttat      3240
     gtggacgatg tgctttcggg cgcaaatacc atcgagacag cggttgaata ttatgagcag      3300
     ctgaaatcat ccttagctcg aggtggtttc ccgttgacga aatggtgctc caattcagag      3360
     gagtttttgc agaatatccc agaagaagac caagaaaaac agcaagcgat tccagtctac      3420
     gaagcgaacg agttgattaa actgctaggg ttgacttggg acccgaaagc agatactttc      3480
     cacattgcaa gcccgtccat ctcatcgtct gccgccaagc ccgccaccaa gagaacaata      3540
     tactcggagg tagcaaaact cttcgatcct ttgggactgt tttctccagt gatcgtggtc      3600
     gccaagcttc ttgtgcagca cctgtggaag acaaagcaag gctgggatga acctgtagag      3660
     aaggagtgtc aacagaaatg gaacgaacta caacaagctt tgccgcaact agatctcatc      3720
     catgtcccga gaagagtaac gagtgatgac gcagtatgtt ttgaattgca tggtttcgcc      3780
     gatgcgtcca ccgttgccta tggcgcctgt tgttatatgc gaagtgtgtt ctcggatgga      3840
     tcagcgaagc ttgtgttatt ggccagcaaa tcaaaggtgg caccgctcca tgacttgtcg      3900
     attcctagga aggaattgtg tgcagcattg cttctgactc gtctgttgca gaaagtgatt      3960
     ccagcgatgc agatggagtt ccgagaagtg agtttgtggt ccgacagtac catcgttctt      4020
     gcctggttga agaaaccgtt ggagcaattg caaacttttg tgcgaaaccg tgtagcggag      4080
     atttgtagta acacagcaga ttaccagtgg aagtacgtaa gctcgaagaa caaccctgca      4140
     gacatcgtgt ctagagggca gttacctgaa gcactttgcc aaaatcgttt gtggcagcat      4200
     ggtccagaat ttctagcctg ttccaactat gaaatagagg ttgtagacag cgtactacca      4260
     gaaccgttac ctgaaatgaa gaccgttgta gcagcagttg tgaaaatcga ttccgctgtg      4320
     ttcccgttca tgtatgactg cagtgacttc cgcaaggttc agcgaattat ggcgtatgtt      4380
     cgacggtttg tggaaaactg tcgtaagaaa aatccgcttc aacgagtgaa aaaggtgtac      4440
     cttaccgtgt gcgagttacg tcaagcctgc gatgacatct ttagagtggt tcagcacaag      4500
     catctagccg acgagatcaa gctggtttca tcgggtgaat caagcaaacg aattggaaac      4560
     ctacgccctg tgttcatcaa tggcttgctt cgtgtgggtg gccgtctcga taagtcagcg      4620
     ttgcccttcg aatccaagca tccgattatt ttacccgata aagacccaat cgtaagaatg      4680
     tatgtccgaa ccgttcacga agaactcctc catattggac agaccggttt gatcaatgct      4740
     ctccgtcaaa gatactggct gcttaattct cgttccactg ttcgacaagt aacacgcagc      4800
     tgtgtcaggt gttttcgtac cagtccagtc ggcactacgc agctcatggg agacttgcca      4860
     ccaaccagag taaatccatc gcctccgttt gctgtaacag ggattgatta cgccggccct      4920
     atctggatta aagaaggcaa gtatcgtccg aaaatcgtga aggcatatat tgcggtgtat      4980
     gtctgcatgg ctaccaaagc catccatttg gaagcggtta ccgatttgag caccaatgca      5040
     ttcttggcat cgttgaagag atttgtcagt cgtcgaggtc tggttcagcg gctttactcc      5100
     gataatgcca caaatttcag gggtgctcac catgaaatga acgaactctt caaacagttc      5160
     caggatcaga aagcgatcga cgatatccat cagttctgcc aaacacgtga aatagaatgg      5220
     cacttcatcc cgccggatgc tcctgagttc ggtggccttt gggagtcggc cgttaaatct      5280
     gccaaaacgc acctgaagaa aatcgttggc aactccaaat tgaccttcga agagcttgcg      5340
     accgtgttgg cagagataga agcagtatta aactcacgtc cgctattcgc catctcaaac      5400
     gatccagccg actcgaaggt gatcactcca gctcactatt tgatcgggcg tcctcttgtc      5460
     gccccagccg aaccatcttt ggaagacgtt aatgccaacc gtttggaccg ttggcagcac      5520
     ctgcaagtaa tgagagatca cttttggaga gcttggagtc gcgattacct taacaccttg      5580
     cagcctcgta agaagtactt gagaaccacg ccgaacattc cagtaggaac gattgtcctg      5640
     cttcacgaaa aaacgcaacc gcctctcagt tggaaattag gacgagtttc cgctgtgtat      5700
     cctggtgacg acggtttggt aagggtagtc gatgtgttct ccaacggatc cacatatcgt      5760
     cgtcccatca cgaaggtttc gattctgccg attgaggaca accttccaga agcaacgcca      5820
     agagaagaat gttgaaattt ccattccaac ggggggagta                            5860
//
ID   BEL-824_AA-LTR repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-824_AA-I;
KW   BEL-824_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-379
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-379
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2129-2129 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 379 BP; 89 A; 100 C; 88 G; 102 T; 0 other;
     tgttctgtca ccattcaacc gcccctcggt tgctgcgatg aaaaaaagct ccagtgcagc        60
     ttgaagagaa aaacccaacc agtttcagtt ctcgcaatac agcgatcgag ttcagaccac       120
     ttgtaattag ttaagaataa aagtagttaa tcgtagcact gagttttagt tggtccgttc       180
     ccaagtttcg cagtgtcaca gtgggtgacc gtcgtaatcc cggtagtgtc cgttccgtcg       240
     tagatgccac agtgcgtgga ccagtgttcc ctcccgaatt cgtatggtag caggatcaca       300
     gtgcgtgatc gctgcattcg tttccgtcgc cggatttaca gtcctccaac aatctcgttg       360
     cccgttaccg ttccgaaca                                                    379
//
ID   BEL-825_AA-I repbase;    DNA;    INV; 6645 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-825_;
KW   BEL-825_AA-I; BEL-825_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6645
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6645
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2173-2173 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1228..6510
FT                 /product="BEL-825_AA-I_1p"
FT                 /translation="MGGKKLKPKIHVRESIVDFLNRTEMFLQNTESPGEFQ
FT                 IKFRLEKLEAKWDEFEEIQAEIEGADDHEENIDQHRQVRADFEEKYFEVRA
FT                 GLVAKLPREIPQNNQNVSLPAATVETASVHTYVRLPQINLPEFDGCYEKWL
FT                 AFHDTFQALIDSSPELSNIQKFHYLRASLKGDALKLIDSFPMSDANYRVAW
FT                 DSLVARFSNKYLLMKRHLNALFEYPKMRRESATGIHELIDCFERNTKILDQ
FT                 LGERTSGWGAMLTHLMVSKLDDVSQKHWEEHASDVDDPSFQVLLDFLKKQT
FT                 RVLDAVSVDQLLSTPNATSSTNVSKSRPGRVSVNSATENPVPNCIVCNEQH
FT                 FISRCSTFNALPVDQRLQFTNSKHLCSNCLGKNHLARDCPSRFRCRTCSKK
FT                 HHTLLHPGFPGSGSSSTVISDLVTIPETSSVDSDPPSFDNLASSSNPTVSS
FT                 NVTMRIQGSHVFLLTVILEVKDKWGRTHLARALLDSGSQVNLMTENLCQLL
FT                 KLPRNDKKVEISGIGRFRKQIAHEVSTIISSRIRAFSMSMDFLVMAQVTDN
FT                 QPSTSLPLANWRPPPEMKLADPDFFLSGPIDIVLGSQFFYDFHLLDGGRLQ
FT                 IRKFDGTLPVFVNTVFGWVAAGESEWNEVDSRVSCNLVSTQTLDKSIERFW
FT                 SIEELVEKKPRSQEEEDCEAHFQQTVTRDETGRYIVRYPKHIGFNNLIGES
FT                 RTLAVRRFQQLERRLGREADVRIQYNKFMQEYVDLGHMKLIGVLENVQDDE
FT                 HTVCYLPHHPVFKESSSTTKLRVVFDGSAKTSTNHSLNDALLTGPVIQDDL
FT                 LDLMVRFRKHPIALVADVEKMYRQIRIHPEDTPLQRIIWRFDPSEPFQVYE
FT                 LQTVTYGLSPSSFLATRVLQKLAEDNAQRYELAAARVSNDFYMDDFISGAE
FT                 SVEQARKLQEDVQTLMAEGGLQLRKWNSNRPEVLDGLPDDLNGNSPALHLE
FT                 YESSSERTIKTLGVSWETESDQLGIEICEMKFDKLWTKRKVFSAIAQLYDP
FT                 LGIISPVVAWAKIHMQHLWLIPVDWDDLIPEEISIKWQEFYEQLSILQSFK
FT                 VPRHVFVLNPVEIQFHIFCDASEVGYGTCIYSRSISKDGQIMTELISSKSR
FT                 VAPLKRVSLPRLELCAALLAAKLYSRVSAALGMEGIRCWFWSDSTVTLHWI
FT                 QTPPNAWQTFIGNRTSEIQRLTHMHTWNHIKGIENPADYVSRGMFPQDFIN
FT                 NTVWRHGPVWLQRDERDWPKQLNLEPAAEHLLERRKHVTLVNTYQPDISLC
FT                 ERYSSFWRLVRITAWILRFIDCCRTKNRKQAAFITVQELQAAKEYLVKGVQ
FT                 HQAFSEEIKTLKKKLPIPSKSKLKNLHLEIDHNGILRVRGRLALSEENYQT
FT                 KHPMVLPNKHPLTRLIAEHFHTLSLHSGPRMTLASMRQEFWPLRGKDLANF
FT                 VCRKCLVCFRHHPVPIIQPIGQLPKTRTAPSRPFTITGVDYCGPVYMKPVH
FT                 RRAAPQKAFIAVFICFATKAVHLEIVCDLSTEAFIAALRRFIARRGLPTEM
FT                 HSDNGTNFQGAKNALVNLHTLLNDTNHQQKVIDECSKKGIKWTFIPPRAPN
FT                 FGGLWEAAVKTAKTSLSKTIGNAKLSYEDYATVLAQVEANMNTRPLTPLSD
FT                 DPDELNVLTPGHFLTGSSFGTLPDPDYTNVPTNRLKHYQQLQQLVQQHWVR
FT                 WKKEYLTEINNQRMNSSTPVDISVGQLVLVREDNKSSCTWPLARIVAIHPG
FT                 EDQLVRVVTVKTATGTYTRPVSRICPLPLDEELMQQQQVKD"
XX
SQ   Sequence 6645 BP; 1886 A; 1527 C; 1463 G; 1767 T; 2 other;
     ttggtgccgt gaccaggatt gcgttccaag gaagcgacgc ggcgtcactg cggccataac        60
     tggcgckcaa ttacaaaagg acctacgcca tactgggata ccacaaatgc aattgtgtcg       120
     ccatagcwct tacgattgtt tggtataact tgaagccatc acgctattct tattggattg       180
     gatggattgc tccttcaaag gtcttcaaaa agccagtcgg gattgaaagt tcaaggcctg       240
     tttgacaggc tcaccaggtg agtacctgtc caagcaatta ttttcccctt tcattcctac       300
     ctggtcgttt tttctgcata ctttctcggt gttgccgtta cactacaaac ccggatttgg       360
     agagcaatcg tacggacgaa aggagactac aaggaacgga tcctaccaat tgggttatat       420
     gaccatactg gagactgttt ttggctgaaa tttcgttccg tgaacggagt accgaatagt       480
     ggacggtttt cctgaataaa ttgtttaaaa tttggagcaa acctacattc atttgaccgc       540
     taagccctgc attaccttat atgttgcctg gaagttgatg agtagatgga atcggattgg       600
     atgttggatt aaaaggaggt tttttttgga tttgttctta atacaaggcc tgtcgaacag       660
     gctcacaagg tgagtacctg tctaacgatc catcctttag ggagaaggtg cttctcttgg       720
     atcatatttc gcagaaaacg acctgaccga ctgacgaata aatagtgtat cgttgatacg       780
     gagaggttgt gcttggagct ttgagaacgg ttggactttt taagcaataa ggggaacaat       840
     ttacggatcg atcattatac aaggcctatc aaacaggctc acagggtgag tacctgtcca       900
     tcgatctact ctgcgttgtg aagtgtgctc ctcttgggga ccttgcttac aggaattcga       960
     ttgtcattcg gaccagtaca tttctggaag aggctggaaa tactgtgtga agcaagccat      1020
     ctcacctggt attcgaattc gtccttgcct atgattcaat atttgcggaa aaatacagaa      1080
     attcaaggcc tgtgtgacag gctcacaagg tgagtgtttg tccaaaccac tgtatttctt      1140
     tcgcaaaagg tgctccgcgc tgtgttcttg cagaactcgt cgttttgtcc acatttacca      1200
     acggttcact ttggtcagcg tggcgttatg ggtggaaaga agctcaaacc gaaaatccat      1260
     gtgcgagaaa gcatcgtcga ctttttaaat cgcaccgaaa tgttcttgca aaacaccgaa      1320
     tcaccaggcg aattccagat caaattccgt ctagaaaagc tcgaagcaaa gtgggacgaa      1380
     ttcgaggaaa tccaagccga gattgagggt gctgatgacc acgaagagaa catcgaccaa      1440
     catcgtcaag taagagctga tttcgaggag aaatattttg aggtaagggc agggttggtt      1500
     gccaaattgc cacgtgaaat accccaaaac aaccagaatg tttcacttcc tgcggctacg      1560
     gttgaaacgg ccagcgttca tacctatgta cgcctaccgc agataaactt accagaattt      1620
     gacgggtgtt acgaaaaatg gctagcgttc catgacacgt tccaagctct aattgattct      1680
     tcgcccgaac ttagtaatat acaaaagttc cactaccttc gagcctcttt gaaaggtgat      1740
     gctctgaagc ttatcgactc atttcctatg agtgacgcaa attacagggt tgcttgggac      1800
     agtttggtag cacgtttttc caacaaatat ttgttgatga aacgacattt gaatgctttg      1860
     tttgaatatc caaaaatgag aagggagtca gcgactggaa tacacgagct tatcgattgc      1920
     ttcgagagaa atactaaaat attggaccaa ctgggtgagc gcactagcgg atggggagca      1980
     atgctaactc atttgatggt ttcaaaactc gatgacgtta gccagaaaca ctgggaagaa      2040
     catgcttcag atgtagacga tccgtcgttc caggttctac tcgattttct taagaagcag      2100
     actcgggtac ttgacgctgt ttcggttgat caactattat caactcccaa tgccacatca      2160
     tcaactaatg tgtctaaatc tcgtcctgga agagtgtcag tcaactcggc gactgaaaat      2220
     ccagttccaa actgcatagt gtgcaatgaa cagcatttta tttctcgatg ttctacattc      2280
     aacgctcttc cagtagatca acgattgcag ttcacgaact ccaagcatct ttgcagtaat      2340
     tgccttggaa agaatcacct agcacgagat tgcccttcta ggtttcgctg taggacttgt      2400
     tccaaaaagc atcacacttt gctacatccc ggatttcctg gttctggctc ctcttcaacg      2460
     gtaatatcgg atttggttac aattcctgag acttcttctg ttgatagtga tccaccgagc      2520
     tttgacaacc ttgcttctag ttcaaatcct acagtttcct ctaacgtgac gatgcgaatt      2580
     caaggatcac atgtcttctt acttacggtg atattggaag ttaaggataa atggggaaga      2640
     acacacttgg caagagcgct cttagattct ggttcgcaag taaacctaat gacagagaat      2700
     ctttgtcagc tactcaagtt accacggaac gacaagaagg tagaaatcag cggaataggt      2760
     cgtttccgaa agcaaatcgc tcatgaagta tccacgataa tcagctctcg tattcgggcc      2820
     ttctcaatgt caatggactt tttggtaatg gcgcaagtca ctgataatca accatcaact      2880
     tctctaccat tagcaaactg gcgaccacca cctgaaatga aacttgcaga tcctgatttt      2940
     ttcctctctg gtccgattga tatcgtatta ggctctcaat tcttctatga cttccacctt      3000
     cttgatggtg gccggcttca gattcgaaag tttgatggca cgctgccggt gttcgtcaac      3060
     acggtgtttg gatgggttgc cgcaggtgaa tcggaatgga acgaggtgga ctcaagagtt      3120
     agttgcaatc ttgtttcaac acaaacattg gacaaaagca ttgaacgatt ttggtccatt      3180
     gaagaattag tagaaaagaa acctagatct caggaagaag aggattgtga agctcacttt      3240
     caacaaaccg tcacgcgcga tgaaacaggg agatacatcg ttcgttatcc aaaacacatt      3300
     gggtttaata atttgatcgg cgaatccaga acattagctg tacgccgatt tcaacaatta      3360
     gagagacgtt taggacgaga agctgatgta cggatacagt acaataaatt catgcaagag      3420
     tacgtggact tgggtcacat gaaacttatt ggtgtcttag aaaacgttca agacgatgaa      3480
     cataccgttt gctaccttcc ccaccatcca gtttttaagg aatcgagcag tactacaaag      3540
     ctacgagtag tttttgatgg ttcggcaaaa acatctacca atcactctct caacgacgct      3600
     ttgctaacag gcccagtcat acaggatgac ctgttagatc tgatggttcg gtttcggaaa      3660
     catccaatcg ctttggtagc cgatgttgaa aaaatgtatc ggcagattcg cattcatcca      3720
     gaagatactc cactccaaag aatcatctgg cgcttcgatc cttccgaacc cttccaagtg      3780
     tatgagctgc aaacggtgac gtacggcctg tctccttctt catttttagc tactcgtgta      3840
     ctacagaaat tggcagagga taatgcacaa cgctatgaac tagcagcagc aagggtatcc      3900
     aatgatttct atatggacga cttcatttct ggggcagaat ctgtagagca ggctcggaaa      3960
     cttcaggaag acgtccagac attgatggca gaaggtggac tgcaactacg taaatggaat      4020
     tcgaatcgac cagaagtact agatggtcta ccagatgacc tgaacggcaa ttcaccagca      4080
     ttgcatctcg aatacgaatc ttcatcagaa cgaacgatca aaacgcttgg agtatcttgg      4140
     gagacagagt cagaccagtt gggaatcgaa atttgtgaga tgaaattcga taagttgtgg      4200
     actaaacgca aggtgttttc ggcgattgct caactatatg acccccttgg tattatctct      4260
     cctgtagttg cttgggcaaa aattcacatg caacatctct ggttaattcc tgtcgactgg      4320
     gacgatctaa ttccggaaga aatttctatt aaatggcaag agttttatga acagctatcc      4380
     atacttcaat ccttcaaggt tcctcggcac gttttcgtct taaatcctgt cgaaatccag      4440
     tttcatatct tctgcgatgc ttcggaggta ggatacggca catgcattta ctctcggtcc      4500
     atcagcaagg acggtcaaat catgactgaa ctcatctcat ctaaatctcg cgttgcaccg      4560
     ctgaaacgcg tgagtttgcc tcgcttagaa ctctgtgctg cacttttggc agcaaaactt      4620
     tacagtcggg tttcggcagc tctgggcatg gaagggattc gttgctggtt ctggtctgat      4680
     tcaactgtaa cacttcattg gatacagaca ccacctaacg cctggcaaac gttcattgga      4740
     aatcgtacct cggaaataca gcgattgaca cacatgcaca cttggaacca tattaaagga      4800
     atcgaaaatc ccgccgatta cgtatctcgt ggcatgtttc cccaagactt catcaacaat      4860
     acggtgtggc gtcatggtcc cgtttggctt caaagggacg aaagagattg gccaaaacaa      4920
     cttaacttgg aacctgcagc cgaacacctg ttggagagaa gaaagcacgt aacgctcgtg      4980
     aatacgtatc aacctgatat ttcactttgt gaaagatatt cttccttttg gagacttgtt      5040
     agaataactg cctggatact acgtttcatc gattgctgtc gaacaaaaaa ccgtaagcaa      5100
     gcagcattca tcactgtaca ggaattacaa gctgcaaagg aatatttggt caaaggcgtt      5160
     cagcatcaag cattttccga agaaatcaaa accctgaaga agaagctacc catcccatca      5220
     aaatcaaaat tgaaaaatct gcatctcgaa atcgatcaca acggcattct tcgagttagg      5280
     ggccgtctcg cactgtccga agagaattac caaaccaaac atcctatggt cctgcccaac      5340
     aagcaccctc tcactagact gatcgcagaa catttccata ccctgtcatt gcattctggt      5400
     ccgcgaatga cactagcttc aatgcggcaa gaattctggc cattacgcgg taaggacctc      5460
     gcgaactttg tatgtcgcaa gtgtctcgtt tgctttcggc accaccctgt ccctattatc      5520
     caaccgattg gtcaacttcc aaagaccaga acggctccta gcagaccatt cacgattacc      5580
     ggtgtggact attgtggccc agtctacatg aaaccggttc atcgacgtgc agccccacag      5640
     aaagcattca ttgcagtttt tatatgcttt gccactaaag ccgtgcattt ggagatagtt      5700
     tgtgacctct ccactgaagc cttcatcgct gctctacgtc gcttcattgc ccgtcgtggg      5760
     ctccctaccg agatgcattc ggataatgga actaacttcc aaggagccaa aaatgcactg      5820
     gtaaatttgc acaccctcct caacgataca aatcaccaac aaaaggtaat cgacgaatgc      5880
     agcaaaaagg gaattaagtg gacgttcatt cctcctaggg cgcctaattt cggtggccta      5940
     tgggaagctg ctgtgaaaac agccaaaacg tctctatcca aaaccatcgg caacgccaaa      6000
     ctctcctacg aggattacgc cacggttctt gcacaggtgg aagccaacat gaacactcgt      6060
     ccgctcacac ccctatccga cgatccagat gagctaaacg ttctcactcc cggacatttt      6120
     ttgaccggat cttcatttgg gacacttccc gatcctgatt acacaaatgt cccaaccaat      6180
     cgattgaagc attatcagca actgcagcaa ctggtacaac aacactgggt ccgctggaaa      6240
     aaggaatact tgacggaaat caacaatcaa cggatgaatt cttcaacgcc ggtcgacatc      6300
     tccgttggcc aactagtcct tgtgcgagag gacaacaaat cgtcttgcac ctggccacta      6360
     gcgagaatag tagcgattca tccaggagaa gaccaactag tccgcgttgt tacggtgaaa      6420
     actgcgactg gaacgtacac acgaccggta tctcgtattt gtccattgcc acttgacgaa      6480
     gaactgatgc agcaacaaca ggtgaaggac tagacgcagc taaacaggat tactctgatg      6540
     aaatcttgaa tttgacttgt tgtaaagcta aatccatttg tgtcctagtt aatcattctt      6600
     gtgtcgtaga tagtaaattc gtaaacaaat ttaggtggcc ggcta                      6645
//
ID   BEL-825_AA-LTR repbase;    DNA;    INV; 483 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-825_AA-I;
KW   BEL-825_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-483
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-483
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2040-2040 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 483 BP; 148 A; 82 C; 110 G; 142 T; 1 other;
     tgttgacagt tgtagaggag caagcaaaag agaagtgcga ttaggtcaac tcaaacgtca        60
     ttgtaaaagc gagatgcaag ccgccactga atattattct tatctctttt cgttttatgt       120
     tttatgttgt ttacgaacct gcgtgtagaa gaggaatcat tttgcacttc acttgtagtc       180
     agactttcgt aatagacaka tcagttaaaa tagtagtttc gaactaataa agaaagtgtc       240
     gtagaattat cagtattcaa taaaggtgca gttaaataaa tcgtgtagtt tgtgagaaaa       300
     ccgtggtccg tagtttttta tacttacccg taattgcgcg aatttcggta cttacctgga       360
     ttgtcgtcat cgtcgtcgta acacctaaag gaaggaaagg agaatctggg gctcaactac       420
     gcaaccgata ggagccggat tctgatcgaa tcttggtgga acgcatacgg taaggtcaca       480
     aca                                                                     483
//
ID   BEL-826_AA-I repbase;    DNA;    INV; 6734 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-826_;
KW   BEL-826_AA-I; BEL-826_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6734
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6734
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2117-2117 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6734 BP; 1939 A; 1527 C; 1459 G; 1799 T; 10 other;
     ttggtgccgt gaccaggatt gtgttccgag gatcaacgca tcgtwgcttc attacaaaga        60
     cgggaacgga gtggacaacg ccatagtgaa actctacaga acacaatcaa gtacgccatc       120
     acgacgaaat tattcttaga cgttgcgagt accctgaaag gaaaacaatt gtttagtgga       180
     cggacgccat cattgggcat tttcagaaaa actagtagaa attgaataat caaggcctgt       240
     tggacaggct cacaaggtga gtacctgtcc acaattctac aatcatcttt caattctacc       300
     tggttgtttt tctgtccaat ttctcatttc tatactacac actacgagtt ttgaactgga       360
     tggccgatcg aatgcgggaa aggcaaggct aagacgtaac caaaggagct gggaaccccg       420
     gaaacagaac ttgtacctga attgcattat catatcaatg tggaactaat aaacgattta       480
     ttcgcacgtc gacgtttgat ttaccgatcg ctgagccctg attccattct gcacatacct       540
     attgcgtacc tgggacctta ctcatcatct aacgaggagt tttcgattgc actcattgtt       600
     taaggcctgt cgaacaggct caccaggtga gtacctgtcc gataaaccca cccaacagtg       660
     caaaggtgct tctcttggtg ttttgattgc agatcaacga ttattggtat ttctttttgg       720
     tcgttacgtc ggtggaaagt tattggttta actgctatac aaagcctgcc gtacaggctc       780
     atcaggtgag tccctgtccg acttaatcac ccggtagtgt gaaggtgctt ctcttggcgt       840
     ttcttgatta cagaatcatt acgatcgatg gtctctgtga gttgactaga ttaatcgaac       900
     gtcgataata ataatttata caaggcctgt cgaataggct caccaggtga gtctctgtcc       960
     gaaagttcac tctaaggcgt aaaaggtgct tctcttggcg actcgattac agagacgcag      1020
     cattgatact accgaacgat ctgtaacggc tcatttcttc atcgtggaga cagttgggta      1080
     tagcgttgga agttttggac agagttacac cctttggaga tatttggcta cgaatttcga      1140
     tatcgcttcc tctaaaataa taccaacctc tggaagttgt taaaaataca aggcctgttt      1200
     gacaggctca ccaggtgagt acctgtccaa cctaatacac aatctcgcga aaggtgcttt      1260
     gcttgctacc ctttacagtg aattggtaac attccaaacg ttcattaaat acaatctacc      1320
     ggcaaatacc acgacgatca tgggaggcaa aaagatgaaa tctatgattc atgtgcgaga      1380
     tggcatagtc gactttcttc accgtacaga gaggtttttg caaggcaccg ataacccgga      1440
     cagcttacag attcgatttc gcttagagaa actggaacag aagtggaatg aattcgaaga      1500
     ggttcaaacg gagatcgagg gagcagaaga ccatgaagac aatatggagt accatcggca      1560
     ggtcagagag gttttcgaag aaaagtactt ccaggtaagg gcgggactgg ctggcaaatt      1620
     accacaagaa ataccccaaa ttgcacaaca aactgctgat ttcgtaactc cggcagctca      1680
     tacgaataat gtgttcacta atgtgcgttt gccacaaatt aatctgccag agtttgatgg      1740
     acaatttgag aaatggcttg cgtttcacga tacgtttaca gccttgatcg attcgtctcc      1800
     tgaattaagc aatattcaga aataccatta ccttcgagct tctttgcgtg gtgatgctct      1860
     gaaactagtt gatgcgtttc caatgagtga tgctaactat agggtggctt gggacagttt      1920
     agttgctcga ttctccaata actatttatt gaaaaagagg catttgaatg cgttgttcga      1980
     gtattcaaaa atacgtagag agtctgcatc cagtattcat gagctgatcg actgttttga      2040
     gcggaatacc aaaatmttag atcagttagg agaaaatacg aacggttggg gcgccatgct      2100
     tactcaccta atggtttcca aacttgatga tgtcacattg aaacaatggg aggagcatgt      2160
     ttccagtact gatgagcctt cgttctacga tttaatcgat tttctaaaac gacatactcg      2220
     agtactcgat gctgtgctgg tggatcaaca tctttcttct tcaaatgcaa cttccacatc      2280
     gagtgggtcc agattcagat ctacaagggt ttcggtcaac gcggcaactg aaaatttckt      2340
     accgagttgt gttgtttgca acgaacaaca tttcattaca cgctgcccag catttagtaa      2400
     tctatcggta gatgaacgac tgcaactttc taactctaaa cggctttgca gcaattgctt      2460
     agggcggaat cacttggcga gggattgtcc ttccaaattc aaatgcagaa catgttcgaa      2520
     aaaacaccac acgctattac accccggttt tcctggttct ggttcctctt ccatacactc      2580
     tacggattcg gtcgtggtgt ctgttgmcgc ttcttctcct tgcgatgata cctccagttc      2640
     ggatgatccc aattcaattt cggtggcatc tatatcgtca aacgtggcta tgggagcggc      2700
     aaaatcacac gtatttctac tcactgttct gctgaaggta aaggacgcat ggggaaggac      2760
     acattctgct agagcccttc tggattccgg ttcgcaagcc aatctcatgt cggaacgtct      2820
     ttgccaacta ctcaaacttc cacgaaaaga tacgaaggtt gagataagtg gtatcggaca      2880
     gtcacgtcgt caaattgctc acgaagtttc aacgatcatc agctctcgca ttcaagactt      2940
     ttcattgcca atggattttt tggttttgaa tcaggttacg gacaatcagc catcttcgtc      3000
     gctgcccttt gcagcatgga aacctcctgc agatatgcag ttggcagatc cggatttctt      3060
     cctttctggt ccaatcgata tcatattagg ctctcagttt ttctacgaat tccaccttct      3120
     cgatggtggc cggctacaaa taagaaaatt tgacggcgcg ctcccagtat tcgtcaacac      3180
     ggtatttkga tggattgcta caggagaatc cgactggaag agtggttccc aacgtgtcgg      3240
     ttgtcatttg gcgttgacgg atacactgga caggagcatc gaaagatttt ggtcgattga      3300
     agaactacca aagaaaacac caagaacgca agaggaagaa gattgtgaac tacattttca      3360
     gcacaccgtc agcagggatg gtaatggccg gtttatagta cgatatccga aacgagttgg      3420
     atttcacgac ctcattggtg wttcaaagac tacaaccata cgacgttttc aacagttgga      3480
     gagacgccta gatcgagatg ctgatgttaa gcggcgctat catgaattta tgaaggaata      3540
     cttaaattta caacacatga agctcattgg tacagtcgag gacgtaaaag aagaaactcg      3600
     tacagtctgc tatctcccgc atcatccagt attcaaggaa tccagctcaa ctaccaaact      3660
     acgcgtagta ttcgatggtt ctgcgaaaac atctacgaat acctccctta acgaagcatt      3720
     actcactgga cctgtcattc aagacgatct ctatgatcta ataattcgat ttcgcaaaca      3780
     tgctgtcgca ctggttgcgg atgtggagaa aatgtatcgc caaatcctcg ttcaccctga      3840
     agacacccct ctacaacgaa ttctttggcg ctttgatttg tccgaaccaa ttcaggtata      3900
     cgaactacaa acggtcacat acggactttc tccatcatct ttcctcgcaa ctcgtgtttt      3960
     taaaaaggct cgccgaagat gttaaagaca ggtatggatt ggtggcgtca gtaatatcgg      4020
     aggatttcta catggacgat ttcctttcgg gagcagattc tgttgaaaat gcgaagaagc      4080
     tgaagaacga tgtgcaagat gtaatggcag aaggtgggtt gcagctgaga aaatggagtt      4140
     cgaatcgacc cgaaatattc aacgatgaac ggttcaagga tacgcttaat gatcaaacag      4200
     ttcttcgttt cgaatcggaa caaacgataa agacactggg aatactctgg aagacggaac      4260
     cagaccagtt gagtatcgaa gttcaggaca tcaaaactga agaacaatgg acgaaaagga      4320
     aggttttttc ggcaattgcc caactttatg atccgctcgg ccttgtatcc ccagttgtag      4380
     catgggcaaa aatacggatg caacacctat ggttgactac agttgattgg gacgatccga      4440
     ttccagaaga tgtttgcgtc aaatggaggg agttttatga acaactgcct gcattgaaaa      4500
     ctttcaaaat agcccggtat mtattcgtca aaaatccagt ggaaatccaa ttccatgtat      4560
     ttagtgatgc ttctgaactt ggatacggag cttgtatgta tgctcgatcg accgatgcca      4620
     atggaaacgt ccataccgaa ctgatctctt cgaaatctcg tgttgctccg ctcaaaagga      4680
     taagtttacc acgattagaa ctttgcgccg ctttgctagc agcaaaactm tacgctagag      4740
     tttcagcggc acttcgaatg gaaggcacct catgttggtt ttggtcggac tctactgtta      4800
     ccttacactg gatacaagcc ccaccaaata cctggcaaac atttattgga aacagaacat      4860
     ccgaaatcca gcatctcacc cacggacaca actggaacca tgtcaaggga agtgataatc      4920
     cagcagatta catatcgcgt ggaatgctac caactgagtt tctttcaaac tcttcctggc      4980
     actgtggccc aacatggttg aaaaaggata aagaagaatg gccccaacaa ctcttgcaga      5040
     ctccttcaag cgaaatcctt gaaaaaagaa aaacggtcgt gatagctcag gccgtctctg      5100
     ctcaccattt cctcttcgac aagttttcgt cattctggaa actggtacgt gtaaccgcat      5160
     atgtcttgcg tttcatgaat cgttgtcgtg ctaaaggcaa cgatcagtta ggagtctatt      5220
     taaccgtaac tgaactagag accgctaaac agactttggt gaaaatcgca caacatgaaa      5280
     cgtttttaga agaaattaaa gccatcaaga aaaagaactc tgttgctcca caatcgccat      5340
     tgaaaaccct ccacatcata atggactcaa agggtatcct wcgcaccggt agtcgattgc      5400
     aactgtccga cgaagatcct caagtcaaac accctatggt tttacccagc aagcatcaac      5460
     tcactcgatt aatcgcaaag cattttcaca ttcaaacaca tcactctggc cctcgcatga      5520
     ccctagcatc gatgcgccaa gaattttggc cactacgtgg caaaaatgtg gctaactttg      5580
     tttgtcgtaa atgcactacc tgttttcgtc accgcccagt ccaaatatgc caaccaatcg      5640
     gtcaacttcc aaaaacgcga actgttccca gccgtccatt caccattacc ggtgtcgact      5700
     attgtggccc tgtgtatatg aaaccagtac accgccgcgc agcgccccaa aaagccttta      5760
     tcgctgtttt catctgcttt gccactaagg ctgttcacct ggaacttgtt agtaatctgt      5820
     ccaccgaagc ctttattggt gcactacgtc gttttattgc tcgtcgtggc ctcccaacag      5880
     agattcattc cgataatggt accaattttc aaggagcaaa aaacgaatta gcacaagttc      5940
     atttcttgtt gaacgaccgc caagagcaag caaaaatcta caatgaatgc agccgtagag      6000
     gaatcaaatg ggttttcatt ccaccaagag ccccaaactt tggcggactt tgggaagccg      6060
     ccgtaaagac cgctaaaacg tcgctgttaa aaaccctcgg aaatgccaaa ttgtccttcg      6120
     aggagtacgc cactgttctc acgcaagttg aagccaatat gaattcacgc ccactaacgc      6180
     cactttctga agacccttcg gagctcaacg ttttgacgcc aggccacttt ctaaccggga      6240
     catccattgc tacgattcct gatccagact atacggacat tccaactaat cgtctgaagc      6300
     attttcaaca acttcaacag cttgtccagc agcattgggt acgttggaag aaagagtact      6360
     tgacggagat taacattcaa agaagaacat cttcatcacc agtcgatatc atcgttggcc      6420
     agatggtttt gttgcaggag gataataaac cttctatctc gtggccactt gcaaggattg      6480
     ttgctacgtt tccgggagca gatggaatcg tccgagttgt gacggtcaaa acagcagctg      6540
     gaacctacaa tcggccaaca tccagagtat atccacttcc atttgatgaa aacctaaacc      6600
     agcagaagaa aaatttgtca ataatgaatt tgaatactga aaaggaacga gagacgctcg      6660
     gttgaggcag attgaatgtt tgttttgata gcaatgctta tgtaaatttc gatamaaatt      6720
     taggtggccg gcta                                                        6734
//
ID   BEL-826_AA-LTR repbase;    DNA;    INV; 596 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-826_AA-I;
KW   BEL-826_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-596
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-596
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2130-2130 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 596 BP; 200 A; 96 C; 136 G; 164 T; 0 other;
     tgatgaaaac agtctatgta caaaatagaa acagaagaac tagttgcgag ggttgagaag        60
     aaataggaat caaaacaaac cgaatagtat gtaatgtata tagaagcaaa tgattggtcc       120
     aatgacagtt tgtgttcgaa taggagatgt gaaccggcac ctacagtcaa gcttacattt       180
     tctgtctctt ttcaatttat gttcaatgtt catgtataga tgtatgatat aagaagtttg       240
     tgaaatattg ttcagtataa gttcagcttt cggatcaaac agatcgacgg catattaaag       300
     ttcaaatgga ataataaaga acaaagtgta gtattttgga gcataataaa gtgtacagtg       360
     ttgtgagtag aaaatcgttt tacttacctg tgccacggct tcctcgtata agggttggac       420
     tgtagagtgg acatacttac ctgcatcatt ctcgttactc cgtcgtcatc gtcgtcgtcg       480
     tcgcatacct gtgaaaagaa aggtggaaag gaaaacagct gatcgaccag ctgtggacaa       540
     tccgtgtagc actgaaggaa aatctgggtc ggaacacacc aggtaaggtc acaaca           596
//
ID   BEL-827B_AA-I repbase;    DNA;    INV; 6016 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-827B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6016
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6016
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6016 BP; 1739 A; 1341 C; 1497 G; 1439 T; 0 other;
     gatctttaaa actttcgtca cgatgagtgc taactcgaag gacaagtcgc tggacgcaag        60
     acgggaggta ggatgcgtta attgttcgcg ccccgactcg tacgataatt tcgtccagtg       120
     cgaccactgt gataactggt ggcacatgcg ctgcgcggga gttaccaact ctatatcaga       180
     gcgaccatgg acctgctcca cttgtctacc attgagcgtg tcgtcatcta gcagcaacgc       240
     cgctcgtatt gccctacgtc tgaagctact cgaagaggag cgcgcaatcc agcagcgcga       300
     atgggaagct gaaaaacggg cattcagcaa gaaaagaaag tcatgcagga aatatacagg       360
     ttgctggaag agcaactggc ggcaaaagaa gacggatcca gacgaagtca agtaagtcgc       420
     cgctcaagca tgcgacgaat cagtgcttgg atccaaaacc tcgccgagaa tccagagttg       480
     gaaggtgccg tcggcggagc aaccgtggga ggaaacccaa tattggtcca acaggataaa       540
     tctttcgacg aatcagaggc caatcagtta ccacctgaac gtaaccaacc gtcaaccaaa       600
     ggacagcagc agaaatcgtt cgaaaagtca tcgaagcaac ttgcgctatt ggatcctcaa       660
     gctggccgaa caactattgg gagtcagcag cgaaacactg gcgcgtatcc caaaacggtt       720
     cagattagta acaatcttcc cagtcatgta aatactacca cggctaaagt ttctttccct       780
     gcaccccccc tactaccatc aggtaagcca ccaatcaata ttagaacaaa tgagaacatg       840
     tccgctctac cgagcgaaga cccttatgaa agtcttttag ctagactagg gtctgtaagt       900
     gtgtctccta aatttgaaaa ctcacagcca gcttttttga ccgagtctat aatacaagac       960
     catgtcatac ctaccgtttt tcatccacca gctacggaga gaaacgaaaa tgaattagaa      1020
     ctttcaaaag ccaatacaga ctacgttaat atcagtcaaa catctccatt cccttgcacg      1080
     gcaccgaatg tgtccgagca tgttccctcc ccctcgcagt tagccgcgcg acaagtcatg      1140
     ccccgcgatt tacctccgtt tactggtgac cccgcggact ggccgatatt tatcagtgca      1200
     ttcgaaaata caaccgtcgc gtgtggatat tcaagagtgg agaatctcgc aagttgttta      1260
     aaaggtgccg cgtacgagtc tgtcagaagc cgtcttctat taccagaatc agtgcctcaa      1320
     gtgatcagta cactacgact tcttttcggg cggccggagc tgttaatcaa cgtaatgttg      1380
     gacaaggtgc gatcaactcc agcacctaag gccgaaaagc ttgaaacgct tatagagttt      1440
     ggcatggccg tacagtgtct gtgcgatcat cttcaagcag caggtcagca gtctcatctt      1500
     tcaaatccat acctgttgat ggagctagtg gagaaacttc cgggtcacgt aaagatggaa      1560
     tgggcaagtt atatgcagcg atatccagac gtaaacttga aaacgtttgg agattttatg      1620
     agtggaatgg tgatttcagc aagcaaagtc acattgtact caggaggatg cggcaaagga      1680
     ggaagtgtgg atagaacgaa agttaaaccc agaggatcaa tcaacaaccc atattgctga      1740
     atcggatctg caaagacaag acaagaatag ctgctgtgtt tgcgaaggac atggacatta      1800
     cgttcgagaa tgtgaaacat tcaatgcgct ttctgttgat gaccgatgga aaactgtgca      1860
     aatccatgag ctgtgtcgca gctgtttgac cgcccacgga agaagaagtt gccgatattc      1920
     tcgaccatgt ggaatcgatg ggtgcacgta ccgtcatcat cgccttctgc actcaattcg      1980
     cagcaatcca gtttcagcgg tgaatctagc acgtaacgtc gaaacatctg gaacccatac      2040
     gcatcgtgca gcggaccatt cactactctt tcgaatttta cctgtgacgc ttcatgggcc      2100
     tttgaagtca ataaatacgt acgcctttct tgatgatgga tcgcatctca cactcgttga      2160
     agaccagctt gccagagacc ttggggttga agggagaaca atacctcttt gtcttacatg      2220
     gacaggaaac gtctcccgaa tggaagcaaa ctcgaagcag tttcaactcg tggtatcggg      2280
     ggcagatggg aggaatcagc tgaaattaaa cgacgtccga accgtcaaga ggctggcact      2340
     accgggtcaa acactgcgag tagaagatct tgaaaactct ttcgagtatc ttagaggtct      2400
     acttattgcc ggatatgaaa atgcgattcc ccgtttgtta ataggtgtaa ataacctgca      2460
     ccttaccgtt cccctaaaag tgaaagaagg gcgagtaagt gaacctatcg ccgtcaaaac      2520
     tcgtctgggt tggtgtgtgt atggagggag cagtaattcg tcatccagtt caatcaacat      2580
     tcacgcgtgc gactgtagca tcgatggtgt cttgcatgag atggtaaaaa actactttac      2640
     tctggatgat gttaaaccaa attcatcata cagaataact tccgccgaag agaaaagagc      2700
     gcaagacatt ctccaagcca caaccttcca aactggcgag agatatgaaa ccggtctgct      2760
     gtggaagcaa gacgaaattg agttgcccga aagctacgga atggcgatgc gcaggttaga      2820
     atgcttggaa cgtcgaatgg ataggaaccc ctctttgaaa cagaatttac atcgacaaat      2880
     tgaggagtac caacagaaag gttatgcaca ccgagtcagt gacgaggaga tgaagcgagt      2940
     tgacctcaag cgagtctggt atttgcccct cggagcggtg acaaatccaa agaaaccaga      3000
     gaaagtgcga ataatctggg atgcggcagc tatggttgat ggaacatccc ttaattcaat      3060
     gcttttgaag ggtccagatc agttggtatc gttaccaggg gtgttattca ggtttcgtca      3120
     gtacaatgtg gcggtatcgg ctgatataaa ggaaatgttc caccagataa gaatacggga      3180
     agaagatcga cattctcaac ggttcctatg gagagatgat cccacgaagc cagccgagac      3240
     ctttgttatg gacgtagcca cgtttgggtc tacttgttca cctgcgtcag cccagtacgt      3300
     caagaacctg aatgctacga agtttgcgaa gaagtacccg aaagctgaga aagatatcat      3360
     tgaaaataca tacgtagatg actatctagc cagttttcag acgaaagccg atgcagccga      3420
     aacttctgcc caagttagaa caattcagca agcaggcggg ttctcattgc ggaattggca      3480
     gtccaacagc gccagtgtaa ttcaagcttt aggcgaacca gtggaaccaa gtagcatgca      3540
     tctgtttcaa gacaaaagtc agacgtatga gcgtattttg ggtatgctct ggcttaccaa      3600
     agatgatgca ctatgctttt gtacacagct caaggacgac gtacatcaaa tcatctacag      3660
     taactcacat ccgacaaaaa ggcaagtgct gaggtgtttt atgagttttt tcgatccttt      3720
     gggattgtta ggctttctgt tagtacacgg taaaatatta ctccaagata tctggcgtgc      3780
     tggaacccaa tgggatgaag aggtggaaga agagcactgg aatcgttggc gtgactggac      3840
     ttcgctgctg cggcatgttt ccgatatcaa attaccaaga tgttatttcc ctgaagcgac      3900
     agagctacac taccaacaac tgcaattaca tgtctttgtg gatgcaagcg aagctgccta      3960
     cgctgcagtt gcgtatttcc ggattgtgga tccgaatgga atagtccgtt gcgtattggt      4020
     ttccacgaga accaaggtgg caccattgag gccactgtct atacctcgtt taaagttaca      4080
     ggcagccgtt cttggcaccc gtttaatgcg tttcgttcag gaatctcaca ccctggtcat      4140
     aaaagaacga tacctgtggt cagattcatc aaccgttcta gcctggcttc gagcagatcc      4200
     tagaaagtac aagcaatacg tggcttgcag gattggtgaa attttgtcag agactgaagt      4260
     acgtgaatgg aagtgggtgc ccacaaaatt gaatcccgcg gatttagcca caaaatgggg      4320
     atgtggccca tcgttgaata ccagaagtat gtggttcacc ggtccgccgt atctactgga      4380
     acccgccgat gaatggccca agcagaagat atcgcatcaa acggttgaag tggaattgcg      4440
     tgcttgtatg gtacattcca tgccagctgt acgactacca gtgatcgatt ataatcggtt      4500
     ttcaaaatgg gagagactgc atcgagctac ggcctaagtt catcgttacg tgggaaacct      4560
     gaagcgtacc tggcttggtg tagcaaagaa tatcggttgt ctcactcaag aagagttacg      4620
     gcaagccgaa acaacgttga tagctgaagt tcagtggcag gaatacccgt cagagatggt      4680
     agtgctctat cgcaaccgaa attgcccaga cgcagagaag gaaaatataa acagaagcag      4740
     tgtattgtat cagttgacgc catttgttga tgaagcgggt gtactacgaa tagatggaag      4800
     gataggagcg gctaagcatg tatgcaatga tatgaagttt ccggtcattc tcccaagaaa      4860
     gcatcggatt accgagctta tcgtggacat gtttcatcgg aagttccaac atgcaaattc      4920
     ggagacagtg gtgaatgaaa ttcgacagcg gtattatgta ccgcgcctaa ggacaatagt      4980
     acggagaata accaacgaat gcagtgtatg caaagtcaga aaagcagttc cacacatacc      5040
     tcgcatggct tcgctacctc cagctcgtct agcatcattt accagaccat tcacttatgt      5100
     tggtctagat tatttcggtc cattcgtggt aaaagtaggg cgtggtaacg cgaaaagatg      5160
     gatagcgctt ttcacctgcc ttacaattcg agctgttcat tgcgaaatag tatgcaatct      5220
     gtccacagat gcgtgcctca aagctatacg tagatttgta tgccgtcgtg gtgcaccagc      5280
     agaaatatat tctgacaatg gcactaattt tcaaggcgca gagcggattt tgatgaagga      5340
     aatacaacaa ggtatggccg agacacttac tagtaccaca acgaactggt tattcgttcc      5400
     tcctgcttct ccccacatgg gtggagcatg ggaacgtatg gtacgttcga taaaacaagc      5460
     catgatgagc gcctatcgct gcgatagaaa actcgacgat gagtccctgc atacgtttgt      5520
     catcgaagca gagagcatgg ttaacaatcg cccactaact taccttccct tggatgcgga      5580
     ggaaagtgag gccttaactc ccaaccattt tctgctgggc agttcctctg gaatacgtaa      5640
     ttctgtagca gagcctacca atggttccgt agcagcgaga aattgtttga gtatgatcca      5700
     gctacaattg aactgctttt ggaggcgctg gattaaggaa atgcttccta ccctaacaaa      5760
     aaggactaag tggttcggtg aagaaaagaa cattgcagtt ggagacctgg tacttattgt      5820
     cgacgacgga aacagaaaca gctggacaag aggacgagtg caagaggtca tctccggtag      5880
     tgacggccgg attcgtcagg ctatagtaaa aactgcgaag ggatgcttgc gtagatctgt      5940
     ggcaaagctg gctgtattgg atgtattgga tggtagtaag actggaaccg atggccagta      6000
     ttacgggggg ggagga                                                      6016
//
ID   BEL-827B_AA-LTR repbase;    DNA;    INV; 645 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-827B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-645
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-645
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2149-2149 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 645 BP; 216 A; 124 C; 109 G; 196 T; 0 other;
     tgttgccgct ggctgcactg cttcaaacta gccaacaacg gactcctttc ggttgaaccg        60
     caaagtagat ctgtcaaacg tatggggtgg cagttctatg acacgtaacg atgactcatg       120
     atatttgata tcgtgaatgg tttgagattc ttcgtttcca catcaagtgc atcttaagtt       180
     ctgaatctta atacagatta tttttccctt ttgagaactg tgaaatcctc tttgaagttt       240
     cattaaatgt aagcccaaat gaatttaaaa cctaaaattt ataaaaccta attaaaacct       300
     attctagttg ctatattcta aaaaggggtt aaaacctgta gtgaattcgt taaaacaata       360
     tactattcat aaaagaaagg tattagaaca tgcaaacaga tatccatata gatcatcata       420
     aaatccttat gattacagtc gaattcagat tagctgaatc gggtcgagca ggattagttt       480
     gctaagaaca aacaccgaaa gtgtgagtaa tatttaatgt aacctcaaaa cacccaatta       540
     cctatcaaat atatttacag tttaaagctg tactacaaca caaatcgtgt gttttgcgcc       600
     gctaagaacc cggtgtctgg aacctatctc tgctccccgg taaca                       645
//
ID   BEL-827_AA-I repbase;    DNA;    INV; 5737 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-827_;
KW   BEL-827_AA-I; BEL-827_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5737
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5737
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2177-2177 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..5677
FT                 /product="BEL-827_AA-I_1p"
FT                 /translation="MSANSKDKSLDARREVGCVNCSRPDSYDNFVQCDHCD
FT                 GWWHMRCAGVTNSISERPWTCSTCLPLSVSSSSSNAARIALRLKLIEEERA
FT                 IQQREWEAEKRVFEQEKKAMQEKYRLLEEQLAAKEDGSRRSQVSRRSSMRR
FT                 VGAWIQNLSENPDLEGAVGGLTVGEKPILAQHGKSYDPEAKQLPDERNQPS
FT                 TDGQQQKSFENSSKQLALLDPQINRPPIGTQQRSTGAYPKTVPIGKSVVTR
FT                 VNTTNDKVSFPAPPLLPSGKPPINNETNEKIFALPSDDPYESLLARLGSVS
FT                 ISPKFESSQPAFLTESVLHDHVTPTVSLPPVTERNEAQLELPKANTDNVNI
FT                 SQTSPYMASNLSEHVPSPSQLAARQVMPRDLPPFTGDPADWPIFISAFENT
FT                 TVACGYSKVENLARLQRCLKGAAYESVRSRLLLPESVPQVISTLRLLYGRP
FT                 ELLINVMLDKVRSTPAPRAEKLETLIAFGMAVQCLCDHLQAAGQQSQLSNP
FT                 YLLMELVEKLPGHVKMKWASYMQRFPDVNLKTFGDFMSGMVISASKVTLYT
FT                 GGSSKGSSVDRTKVKSRGSINAHITELDLQRQEKNKCCVCEGPGHHVRDCD
FT                 TFNTLSLDDRWKTVQIHELCRSCLTAHGRRSCRYSRQCGIDGCTYRHHRLL
FT                 HSNRSNPSSAAGQIRNVELSGNHTHRVLNHSLLFRILPVTLHGPLKSINTY
FT                 AFLDDGSHLTLVEDQLARDLGIEGKTIPLCLTWTGNVSRMEANSRQLQLMV
FT                 SGVEGTNQLKLNDVRTVKRLALPGQTLRVEDLENTFEYLRGLPIAGYEKAI
FT                 PRLLIGVNNLHLTVPLKVIEGRVSEPIAVKTRLGWCVYGGSSNSPATSLNI
FT                 HACECSIDGALHEMVKNYFTLDDVKANSSNRIISVDDKRAQEILQVTTLHT
FT                 GERYETGLLWKHDEIELPESYGMAMRRLECLERRMSKNPSLKQNLHRQIEE
FT                 YQQKGYAHRVSDEEMKRADLKRLNSMLLKGPDQLVSLPGVLFRFRQYNVAV
FT                 SADIKEMFHQIRIREEDRHSQRFLWRDDPSKPAETFVMDVATFGSTCSPAS
FT                 AQYVKNLNATKFAKKFPKAAKDIIENTYVDDYLASFQTENEAAETSAQVRT
FT                 IQQAGGFSLRNWQSNCAYVIQCLGETVEPNRKHIFHDKSMTYERILGMLWL
FT                 AEDDELCFCTQLKDDVQQIIYSNSHPTKRQVLRCFMSFFDPLGLLGFLLVH
FT                 GKILLQDIWRAGTQWDEEVEEEHWNRWRDWTLLLRQVSDIRIPRCYFPEAT
FT                 ELHYKRLQLHVFVDASEAAYAAVAYFRIADPNGVVRCVLVSTKTKVAPLKP
FT                 LSIPRLELQAAVLGTRLMRFVQDSHSLIIKERYLWSDSSTVLAWLRADPRK
FT                 YKQYVACRIGEILSETEVCEWKWVPTQLNPADLATKWGNGPSLNTRSMWFT
FT                 GPPYLLGPVEEWPRQKTSHKTVEVELRACNAHSVSDVRQPVIDYNRFSKWE
FT                 RLHRATAYVHRYVGNLRCKRLGVARNIGYLTQEELRLAEATLIAEVQWQEY
FT                 PSEIMILYRNRDCPETNKENLNRQSVLYQLTPFLDEAGVLRIDGRIGAAKH
FT                 VCKETKFPAILPRKHRITELIVDMFHRKFQHANSETVVNEIRQQYYVPRLR
FT                 TIVRRISNGCTVCKARKAVPHIPRMASLPPARLASFTRPFTYVGLDYFGPL
FT                 VVKVGRANAKRWIALFTCLTIRAVHCEIVCSLSTDACLKAIRRFVCRRGAP
FT                 AEIYSDYGTNFQGAERILIKEIQQGIAATLTSTATKWLFIPPASPHMGGAW
FT                 ERMVRSIKQAMMSAYSCDRKLDDESLHTFVIEAESMVNNRPLTYLPLDAAE
FT                 SEALKTIYTVFSHRLHRLNITNITQRTHGTTSGPMKNFSFDEKFSPTGAGI
FT                 EPTFHSTIRLND"
XX
SQ   Sequence 5737 BP; 1652 A; 1330 C; 1396 G; 1359 T; 0 other;
     gatctttaaa actttcgcta cgatgagtgc taattcgaag gacaagtcgc tggatgcaag        60
     acgagaggta ggatgcgtta attgctcgcg ccccgactcg tacgataact tcgtccagtg       120
     cgatcactgt gatggctggt ggcacatgcg ctgtgcggga gttaccaact ctatatcgga       180
     gcgaccatgg acctgctcca cttgcttacc attgagcgtg tcgtcatcga gcagcaacgc       240
     tgctcgtatc gccctacgat tgaaacttat cgaagaagag cgcgcaatcc agcagcgcga       300
     atgggaggct gaaaaacggg tatttgagca agaaaagaag gccatgcagg aaaagtatag       360
     gctgctggaa gaacagctgg cggcaaagga ggacggatcc agacgaagtc aagtaagtcg       420
     gcgctcaagc atgcgacggg tcggtgcttg gatccaaaat ctctccgaga atccggactt       480
     ggaaggtgct gtcggtggat taaccgtggg agaaaagcca attttagctc aacatggtaa       540
     atcgtacgac ccggaagcca agcagctccc agacgaacgt aaccaaccat caaccgacgg       600
     acagcagcag aaatcgttcg agaattcatc gaagcaactt gcgctattgg atccgcaaat       660
     taatcgacca ccgattggga ctcagcagcg aagcactggc gcgtatccca aaacggttcc       720
     gattggtaaa agtgtggtca ctcgtgtaaa tactaccaat gataaagttt ctttccctgc       780
     acccccccta ctgccatcag gtaagccacc aatcaataat gaaacaaatg agaaaatctt       840
     cgctctaccg agcgacgacc cttatgaaag tcttcttgct agactggggt cagttagtat       900
     atctcctaag tttgagagct cacagccagc ctttttgacc gagtctgttc tacatgacca       960
     cgtcacacct accgtttctc ttccaccagt tacggaaaga aacgaagctc aattagaact      1020
     tccaaaagcc aatacagata atgtcaatat cagtcaaaca tctccttata tggcatcaaa      1080
     tttgtctgag catgttcctt ccccctcgca gttagccgcg cgacaagtaa tgcctcgcga      1140
     tttgcccccg ttcaccggtg atcccgcgga ttggcctata tttataagtg cattcgaaaa      1200
     tacaaccgtc gcgtgtggat attcaaaagt ggagaatctc gctagactac aacgttgttt      1260
     aaaaggtgcc gcgtatgaat ctgtcagaag tcgtcttctc ttaccagaat ccgtgccaca      1320
     ggtgatcagt acactacgac ttctctacgg acgaccggag ctgttaatca acgttatgtt      1380
     ggacaaggtg agatcaactc ctgccccgag ggccgagaag cttgaaacac ttatagcgtt      1440
     cggcatggcc gtgcagtgtc tgtgcgatca tcttcaagca gccggtcagc agtctcaact      1500
     ttcaaatccc tacttgttga tggagctggt ggagaaactt ccgggtcatg tgaagatgaa      1560
     atgggcgagt tatatgcagc gatttccaga cgtaaacctg aagacgtttg gtgatttcat      1620
     gagtggcatg gtaatttcag caagcaaggt cacgttgtac acaggaggaa gcagcaaagg      1680
     aagtagtgtg gatagaacga aggttaaatc cagaggatcg atcaacgccc atattactga      1740
     attggatcta caaagacaag agaagaacaa atgctgtgtc tgcgaagggc ctggacatca      1800
     cgtgcgagat tgtgacacct tcaatacgct ttctcttgac gatcgatgga aaactgtgca      1860
     aatccatgag ctttgtcgca gctgtttgac cgcccacggc agaagaagtt gccgctattc      1920
     cagacaatgc ggaatcgatg gatgcacgta ccgccaccat cgccttctgc actccaaccg      1980
     cagtaatcca tcttcagctg cgggtcaaat ccgtaacgtc gaattatctg ggaaccatac      2040
     gcatcgtgta ttgaaccatt cgttgctctt tcgcattttg cctgtaacgc ttcatgggcc      2100
     tttaaagtca ataaatacgt acgccttcct tgacgatgga tcgcatctca cactggtcga      2160
     agaccagctg gccagagacc ttggcattga ggggaaaaca atacctcttt gtctgacatg      2220
     gacaggaaac gtctctcgga tggaagcaaa ctcgaggcag cttcaactga tggtgtctgg      2280
     agtggaaggt acgaatcagc tgaaactaaa cgatgtcaga accgttaaga gactggctct      2340
     tccaggccaa acactgcgag tcgaagatct tgaaaacacc ttcgagtatc tgagaggtct      2400
     acctatcgcc ggatacgaaa aagcgattcc ccgtttgtta ataggcgtga ataatctgca      2460
     cctcaccgtt ccattaaaag tgatagaagg tcgagtaagt gaacctatcg ccgttaaaac      2520
     tcgtctgggg tggtgtgtat atggagggag cagtaattcg ccagccactt cactcaatat      2580
     tcacgcctgc gagtgtagta tcgatggtgc cctgcacgag atggtgaaaa actactttac      2640
     tctggatgat gtcaaagcaa actcatcaaa cagaataatt tctgttgatg ataaaagagc      2700
     acaagaaatt ctccaagtaa caactcttca cactggtgag agatatgaaa ctggattgct      2760
     ttggaagcac gatgaaatcg agttgcccga aagttatggg atggcgatgc ggaggttaga      2820
     atgtttagaa cgtcgaatga gcaagaaccc ttctttgaag caaaatttac atcgtcaaat      2880
     agaagaatat cagcaaaagg gttatgctca tcgagtcagc gacgaggaga tgaagcgagc      2940
     ggatctaaag cgccttaatt caatgcttct gaagggccca gatcagttgg tatcgttgcc      3000
     aggagtgtta tttcggttcc gtcaatacaa tgtggcggtg tcggcggata tcaaggaaat      3060
     gtttcaccag ataagaatac gagaagaaga ccggcactct caacggtttc tatggagaga      3120
     cgatccttcg aaaccggcag agacctttgt tatggacgta gccacgtttg gatccacttg      3180
     ttcacctgct tcggcccagt atgtcaaaaa cctgaatgcc acaaagttcg cgaaaaagtt      3240
     cccgaaagcg gcgaaagata ttatcgagaa cacatacgta gatgactatc tagccagttt      3300
     tcagaccgaa aacgaagcag ccgaaacttc cgcccaagtt agaacaattc agcaggcagg      3360
     tggcttctca ttgcgaaact ggcagtctaa ctgcgcctat gtgatccagt gcttagggga      3420
     aacggtggaa ccgaacagaa agcatatatt ccacgacaaa agtatgacat atgagcgtat      3480
     tttgggcatg ctatggcttg ccgaagatga tgagctatgc ttttgtacgc agctcaaaga      3540
     cgacgtacag caaatcatct acagcaactc acatcctaca aaaaggcaag tactgaggtg      3600
     ctttatgagt ttcttcgatc cgttgggatt gttaggtttc ctcctagtac atggcaaaat      3660
     attactacaa gatatctggc gtgctgggac tcaatgggat gaagaggtgg aagaggaaca      3720
     ctggaatcgt tggcgtgatt ggactttgct gctacgacag gtttcagata tcagaattcc      3780
     taggtgttac ttccctgaag ctacagagct tcactataaa cgattacaat tacatgtctt      3840
     tgtggatgcg agcgaagctg cttacgctgc agttgcatat ttccggattg cagatccgaa      3900
     tggggtagtc cgttgtgtat tggtctccac gaaaaccaaa gtggcaccgc tgaagccatt      3960
     gtccatacct cgtttggagt tacaggcagc cgtccttggc acccgtttga tgcgatttgt      4020
     tcaggattcc cacagcctaa tcattaaaga acgatacctt tggtcagatt catcaaccgt      4080
     tcttgcttgg ctccgagcag atccgagaaa gtataagcaa tacgttgcct gcagaatagg      4140
     tgaaatctta tccgagaccg aagtatgtga atggaagtgg gtgcccacgc aattgaatcc      4200
     cgcggatcta gccactaaat ggggtaatgg tccatcgctg aataccagaa gcatgtggtt      4260
     cacaggtccg ccgtatctac ttggacctgt agaagagtgg cccaggcaga agacatcgca      4320
     taagactgtt gaagtggaat tgcgtgcatg caatgcacat tccgtatcag atgtacgaca      4380
     accagtgatc gattacaatc gattttcaaa atgggagaga ctacatcgag caacggccta      4440
     cgttcatcgt tacgtgggaa atctgaggtg taaacggctt ggtgttgcga ggaacatcgg      4500
     ttatctcact caagaagaat tacgactagc cgaagcaacg ttaatagcgg aagttcaatg      4560
     gcaggaatac ccatcggaga tcatgatact ctatcgcaat cgagactgtc cagaaactaa      4620
     taaggaaaat ctaaaccgcc aaagtgtatt gtatcagttg acgccatttc tagatgaagc      4680
     aggcgttcta cgaatagatg ggaggatagg agcggctaaa catgtatgca aggagacgaa      4740
     gtttccggcc attctaccaa gaaaacatcg gattaccgag ctcatcgtgg acatgtttca      4800
     tcgaaaattc caacatgcaa attcggagac agtggtgaat gagattcggc aacagtatta      4860
     tgtaccgcgt ctacggacga tagtacggag aataagcaac ggatgcactg tatgcaaagc      4920
     cagaaaagca gttccacaca tacctcgtat ggcttcgcta ccccctgctc gtctggcatc      4980
     atttactaga ccattcacct atgttggtct ggattatttc ggaccattgg tggtaaaagt      5040
     agggcgcgct aacgcgaaaa ggtggatagc actcttcacc tgccttacca ttcgggccgt      5100
     ccattgtgaa atagtatgca gtctatccac agatgcgtgc ctcaaagcca tacggcgttt      5160
     tgtatgtcgt cgtggtgcac cagcagaaat atattctgat tatggcacca acttccaagg      5220
     cgcagagcgg attttgataa aggaaattca gcaaggcata gccgcaacac ttaccagtac      5280
     cgcaacaaag tggttattca ttcctcctgc ttctccgcac atgggtggag catgggaacg      5340
     catggttcgt tcgataaaac aagcaatgat gagcgcctat agctgcgaca gaaaactcga      5400
     cgatgaatcc ctgcatacgt tcgtcatcga agcagagagt atggtaaaca atcgtccact      5460
     aacttacctt cccttggatg cagcagagag tgaggcctta aagacaattt acacggtctt      5520
     cagccatagg ctgcacagac tgaacataac taacattaca caacggacac acggaacgac      5580
     cagtggacca atgaagaatt tttcgtttga cgaaaagttt tctccgactg gggcgggaat      5640
     cgaacccaca ttccatagca caatacgcct aaacgactga cgccgctaac cgcgctgcta      5700
     cgaagcccat caactcctaa cctcctaacc aggagga                               5737
//
ID   BEL-827_AA-LTR repbase;    DNA;    INV; 644 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-827_AA-I;
KW   BEL-827_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-644
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-644
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2041-2041 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 644 BP; 226 A; 119 C; 103 G; 196 T; 0 other;
     tgttgccgct ggctgcactg cttcaagcta gatatcaacc gactcctttc ggctgacccg        60
     caaagctgct ctgtcaaacg aatgtggtgg cagttccatg acatgcaacg atgacaaatc       120
     aaatttgata tcgagatagt tcagctccat agcaagttaa tcttgaatac taaattctct       180
     atacaaagat tgtttttccc tttaaaaaga actctgcatt tccctttgaa tttgcttaaa       240
     cgtaaggcta aatgaattta aaacctacag ctaataaaat ctaattaaaa cttattgtag       300
     ttacagtatc taaaaggggt taaaacttaa actattgtga attagttaaa acacactata       360
     tttctaaaag taagtcataa aacatgtaaa atgtgtatcg attatcaaac aatcttaaca       420
     ataattacag tcgaattaaa acgtctgaga cggtgcgagc agattaagtt tgataaggtc       480
     aaataccgaa agtgtaagta atgcaagaaa tgtaaacgta accttaaata cttaacatct       540
     gaccaaatat atttacagtt taaagccttt gatacaccac aattcgtgtg ttttgtactg       600
     ctaagaaccc ggtgtctggt tcttatatct gctccccgat aaca                        644
//
ID   BEL-828_AA-I repbase;    DNA;    INV; 6424 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-828_;
KW   BEL-828_AA-I; BEL-828_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6424
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6424
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2174-2174 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1007..6280
FT                 /product="BEL-828_AA-I_1p"
FT                 /translation="MSTLRKYKGLVRNRDSIIEFLQRVAHFLKSTKEFDEQ
FT                 AVKIRLEKLEQKWEEFEDLQNDLEGMEDNEDSIPEHKQLRAEFEEKYFEVR
FT                 AGLARKLQMHATPSTSIAHTNPIPNVQASVRLPQISLPEFDGNYQNWLPFR
FT                 DTYVALIDSSAELTDIQKFHYLRASLRGDALKLIDPYSMTEANYRVAWDVL
FT                 VERFSNNYLLKKRHLNALFEYPKMKKESAAVLHELIDCFERNTKILDQLGE
FT                 KTNGWGVMLVHLMVSKLDEVTQKRWEETVMPDKEPSFGLLVEFLKRQTRVL
FT                 DAVSVDQHIFSTTTSSSVSKVRPTKVSVNSATEVSSSPPNCFACSEKHWIT
FT                 RCPTFAKLPVDKRLQLTNSKRLCSNCMGRNHLARDCPSKFRCKTCSKKHHS
FT                 LLHPGFPGSGSTSTPNPTPVADENANISAPTIIDGVSNSGDSISSSMALLS
FT                 SHVAMEQPRSHLFLLTVLLNVKDAHGRTHHARALLDSGSQANLMSENLCEL
FT                 LQLPRRDKKVEITGIGRSRSRTAYTVSTTITSRVQNFSTPMDFLVLEQITD
FT                 DQPSVSISIARWKIPSNMALADPEFNVSGPIDLVLGAQYFYEFHIRDGGRL
FT                 QVRKVDDTLPVFVNTVFGWVAAGETKCTEEQSRVSCHVAIMEPLDKAIERF
FT                 WVVEELTIKSTRSQEEEDCEAHFANTVSRDDTGRYVVQYPKRMDFNSMIGE
FT                 SKQTAQHRFYQTERRLERDPNLQAQYCNFMREYIELGHMRCIGEADDSRLD
FT                 QGKTVCYLPHHPVFKEASSTTKVRVVFDGSAKTSTNHSLNEALLTGPTIQD
FT                 ELLDLMLRFRKHAIALVADVAKMYRQILVHDDDKPLQRILWRFNPSEPIRV
FT                 YELQTVTYGLSPSSFLATRVLKQVALDSGSKYKLAANAVLEDFYMDDFLSG
FT                 ADTLEDATLLQREVQALLAEGGLELRKWSSNNPQVLQNLPIESLGGEKTLH
FT                 FESEHKIKTLGVGWETASDQLCIEVQPFTIDGGWTKRKVFSAIAKLYDPLG
FT                 LVSPVVAWAKIRMQHLWLAAVDWDDPIPEDIVDKWEDFAAQLPLLEGYKVS
FT                 RFIFASDSSSVQFHVFSDASEVGYGACVYARSTDKEGKINIELISAKSRVA
FT                 PLKRLSLPRLELCAALLGAKLYAKISAALRMEGIPCRFWSDSTVTLHWIRA
FT                 PPNSWQTFIGNRTSEIQRLTHGHSWKHVKGIDNPADLVSRGMLPQEFIITN
FT                 IWRHGPAWLAQNEEKWPERPIETPPEDLLERRKVALIAQQPIEHCFLFFRY
FT                 ASFWRLVRITALILRFGNRCRRKPNIKPNSFVTVEELESAKTTLTKIAQQE
FT                 MFAQELKDLAHSRFVSSKSSLRLLGPFLDEKGIIRLGGRLEHSSENFRTKH
FT                 PMLLPKIHPLTRLITRHYHELCMHSGPRMTLATMQQEYWPINGKTVANYVC
FT                 RKCPQCFRHNPVPVNQPVGQLPKPRTNPSRAFTVVGVDYCGPVYIKPVHRR
FT                 AASRKAFIAVFVCFATKAVHLELVCDLSTDAFIAALRRFIAHHGMPAEIHS
FT                 DNGTNFQGANNTLAELYRLFEAKRTREAILKECTMHKIQWHFIPPRAPSFG
FT                 GLWEAAVKTAKTSLAKTLGSTQLSFEDYATVLAQIEANMNSRPLTTLSSDP
FT                 TEVDVLTPGHFIIGSPLISLPEPNYSNIPSNRLTHYQQLQKLIQQHWDRWR
FT                 KEYLTELNRQREKSTSPTDIHVGQIVLVQEDGKPSVSWPLARIEQIHPGAD
FT                 NVVRVVTLKTSSGLYKRPISRIFPLPFDQPPFADSPET"
XX
SQ   Sequence 6424 BP; 1762 A; 1569 C; 1469 G; 1624 T; 0 other;
     ttggtgccgt gaccaggata gcgtttctct ggaacacacc gacgccattg agtcgacgga        60
     caattggatt ggcgccattc ctactcaaca aaaaggaaag cgcgccataa cggtcatcgt       120
     actcgtgaat ccactgggcg ctgccatcac gaatttcatg cgcatggact attcaacgca       180
     accataaggg caatcttata atcggattca taaagggatt gagaatttat tcaaggcttg       240
     tgagacaggc ctacaaggtg aggacctgtc caactattct ttatttcgtt ttcatcccta       300
     cctggtcatt tcttggttct atctatctaa ctacttcgac ggagtctacg gtggccggat       360
     ttttcaatat tcccccttcc aactcggaaa aacgttggac tcggaagggt ttggaccggc       420
     taaagcgcgc aaaggccaat acttcgctac acacacggga gacaaaggtg gaccaacggt       480
     aattgaataa aaggcctgtt agacaggctc aacaggtgag tctctgtcta agcatcacaa       540
     ttatccgttg gaaggtgctt ctcttggtgt tgtttaacag aacagtgcat tcacgcttgg       600
     acacgactgt gtgacgtcat ccatcatcgc tttattacat ctggctgact ctgaaccgtt       660
     gatgagggtt ctttgaggaa gattctatac gcatacgcct tacactgtcg ctgcgcactc       720
     cagagaccac gatttaatac aaggcctgat ttgacaggct caccaggtga gttcctgtcc       780
     atcaaattac attcttatct ggaaggtgct tcgctgggca tattttttac agttgctaca       840
     tctggtcgga gtaacgattt gatacaaggc ctgtttgaca ggctcaccag gtgagttcct       900
     gtccatcaaa ttacattctt gtctggaagg tgcttcgctg ggcgtatttt ttacagttgc       960
     tcactggtgt aacttgcttt ctctacatct ggtcggagta atcaacatgt cgacgttgag      1020
     gaagtacaag ggtctcgtac gcaatcggga cagtatcatc gaatttctac agcgggtcgc      1080
     acacttcctg aaaagcacaa aggagttcga tgagcaggca gtaaaaattc gtcttgagaa      1140
     actcgagcaa aaatgggaag aatttgagga cctccagaat gatctcgaag gcatggaaga      1200
     caacgaagac agtataccgg agcacaaaca gttgcgggct gaattcgaag agaaatattt      1260
     tgaggtaagg gcaggattgg cgagaaaatt acaaatgcat gcgacaccaa gcacttccat      1320
     tgcacacaca aatccaatac ctaatgttca agcgtccgta cgacttcctc aaattagctt      1380
     gccagaattt gacggcaact accaaaactg gcttccattc cgtgacacct acgtagcgtt      1440
     aatcgactcc tcggctgaac taaccgacat acagaagttt cactacttgc gtgcatcttt      1500
     gaggggtgat gctctgaaat tgatcgatcc ttattcgatg actgaggcca attatagggt      1560
     tgcttgggat gttttggtcg agcggttctc caacaactac ctcctcaaga aacgtcacct      1620
     gaatgctctt ttcgagtacc ctaaaatgaa aaaggaatca gcggcggtct tgcatgagct      1680
     tatcgattgt ttcgagcgta acacaaagat tttggatcaa ttaggagaaa agacgaatgg      1740
     ttggggtgtg atgctagtcc acttgatggt ctcaaagttg gacgaagtta ctcaaaaacg      1800
     gtgggaggaa actgtcatgc cagacaagga accctcgttt gggttattgg tcgaatttct      1860
     aaaaaggcaa accagggtgt tggatgcggt ttcggtcgat caacacatct tttcaacaac      1920
     gacgtcttcc agtgtcagta aggttcgtcc cacgaaggtt tcagtcaact cggcgactga      1980
     agtttcatca tcaccaccta attgcttcgc gtgtagtgaa aaacactgga taacacggtg      2040
     cccaaccttt gccaagcttc ctgtagacaa acgtctccaa cttacaaact ccaaacgact      2100
     ctgcagcaac tgtatgggcc ggaaccattt agcacgagat tgtccttcaa aatttcgatg      2160
     caaaacgtgt tcgaagaagc atcattcttt gttgcatccc gggttccctg ggtcaggttc      2220
     aacttctact cccaacccca ctccagttgc ggatgaaaat gcgaacattt ctgctccaac      2280
     gattatcgac ggtgtctcga actctggtga ctcgatttct agttcgatgg ctttactttc      2340
     ttctcacgtg gcgatggagc agccaaggtc acacctgttt cttcttaccg tattgttgaa      2400
     tgtcaaggac gctcatggaa ggacacatca cgcaagggcg cttctggatt ctgggtctca      2460
     agctaatctt atgtctgaaa atctttgcga actgcttcag ttgccacggc gagacaaaaa      2520
     agtggaaatt actgggatcg gacgatcacg gagtcgcaca gcttatacag tctctaccac      2580
     tatcacctct cgtgtgcaga acttttcaac gcccatggat tttctggtct tggaacagat      2640
     cactgacgat caaccttctg tatcgatttc gatagctcgt tggaaaatcc catccaatat      2700
     ggctcttgct gatcctgaat tcaatgtctc cggtccgata gatctggttt taggcgcaca      2760
     atatttttat gaatttcata tacgcgacgg tggccggctg caggttcgta aggtcgacga      2820
     tacgcttcca gtatttgtca atacggtatt cggatgggtg gcagccggtg agactaaatg      2880
     cactgaggaa caatcacgag tcagttgtca cgtcgctata atggaaccac tagacaaggc      2940
     aattgaaagg ttttgggtgg tggaagaact aacgataaaa tccacacggt ctcaggaaga      3000
     agaagattgt gaggcgcatt ttgccaacac agtttctcgt gacgacacag gcagatacgt      3060
     cgtgcaatat cccaaacgca tggatttcaa tagcatgatc ggcgaatcga agcagacagc      3120
     gcaacatcga ttttatcaaa cagagcgacg gttggagcgc gatccaaatc tgcaagccca      3180
     gtattgcaac tttatgaggg agtatatcga gttaggtcat atgcgatgca tcggcgaggc      3240
     tgacgattcc cgtttggatc aaggcaaaac agtctgctat cttcctcacc acccggtctt      3300
     taaagaagct agctccacta cgaaggtccg agtagttttc gatggatctg ctaaaacgtc      3360
     gacgaatcat tcgctgaacg aagccttgtt gaccggacct acgattcaag atgaactgct      3420
     ggatttaatg ttgcgattcc gcaaacacgc cattgcatta gtagcagatg tcgccaaaat      3480
     gtatcggcag atcttggtcc acgacgacga caaaccactc caacggattc tctggcgatt      3540
     caatccatcg gagccgattc gagtctatga attgcaaacg gtcacttatg gtctatcacc      3600
     ttcatcgttt ctcgccactc gagtgttgaa acaggtggct ttggattcgg gctcgaaata      3660
     caaattagct gccaacgccg tacttgaaga tttctacatg gatgatttct tatcaggggc      3720
     ggatacgtta gaagacgcca cactgcttca aagggaagtt caagctctgc tagcagaagg      3780
     aggtctcgaa cttcgaaaat ggtcctcgaa caacccgcaa gtactgcaaa atctaccaat      3840
     cgaatcactc ggaggagaaa aaaccctgca cttcgaatcg gagcataaaa tcaaaacgct      3900
     aggagtgggg tgggaaacag catcagacca actatgcatt gaggtacaac cattcactat      3960
     cgacggcggt tggacgaagc ggaaggtctt ttctgcaatt gccaagctgt acgaccctct      4020
     gggactagtt tcacccgtcg tggcttgggc aaaaatccgg atgcaacatc tatggctggc      4080
     tgcagtggac tgggacgatc caataccaga ggacattgtt gacaaatggg aagattttgc      4140
     agcacagcta ccacttttgg aaggctataa ggtttcacga tttatctttg catccgattc      4200
     aagctccgta caatttcacg tcttcagtga tgcatccgaa gttgggtacg gtgcttgcgt      4260
     ttatgcacgt tcaaccgata aggaaggaaa aattaacatc gagctcattt cggcaaaatc      4320
     acgggtagcc ccactcaaac ggcttagctt gccgcgactg gagctctgtg ctgcactact      4380
     gggggcaaaa ctctatgcca agatttcagc agcgctgcgg atggagggaa ttccttgtcg      4440
     gttctggtca gattcgacgg tcacactcca ctggattcgc gcaccaccca acagttggca      4500
     gacctttatt ggaaatcgga cttcggagat tcaacgatta acccatggcc atagttggaa      4560
     acatgtaaaa gggatcgaca atccggcgga ccttgtgtct cgtggtatgc taccgcagga      4620
     atttatcatc accaatattt ggcgccatgg gccggcttgg cttgcacaaa atgaagaaaa      4680
     atggcctgaa cgaccgatag aaacaccacc tgaagatctg ctagaacgtc gaaaggtcgc      4740
     actcatagct caacagccaa tagagcattg cttccttttt ttccgttatg catccttctg      4800
     gcgattagtt cggatcactg ctttgatcct tcgctttggg aaccgctgtc gccgcaaacc      4860
     aaatatcaaa cctaactcat tcgtcacggt agaagaactg gagagtgcca agacaactct      4920
     aacgaagatc gctcaacaag aaatgttcgc tcaagaattg aaggacctag cccatagtcg      4980
     atttgtttcc agtaaatcat cactaagatt gcttggtcct ttcctcgacg agaagggtat      5040
     catacggctc ggtgggcgcc ttgaacactc ctcagagaat tttcgcacca agcaccctat      5100
     gcttcttcca aaaatccacc cactcacacg cctcattaca agacattatc acgaactctg      5160
     tatgcactcc ggtccacgca tgacgctcgc tacgatgcag caagagtact ggccgataaa      5220
     tggaaaaact gtcgctaatt atgtgtgtcg caagtgtccg caatgcttcc gccataatcc      5280
     tgtccccgtt aatcaacctg tcggccagtt gccaaagcct cgtaccaacc caagtagagc      5340
     cttcactgtg gtcggagtag attactgtgg ccccgtttac atcaaacctg tgcatcgacg      5400
     agcagcttcc cgaaaagcgt tcattgctgt ctttgtttgt tttgcaacca aggccgtaca      5460
     tcttgaactg gtgtgtgacc tctccaccga tgccttcata gcagcattac gacggttcat      5520
     cgcacatcac ggcatgcctg ccgaaatcca ttcggataac ggtacaaatt tccaaggtgc      5580
     aaataacacg ctagccgagc tgtatcgctt gtttgaagca aaacgcacca gagaagccat      5640
     cctcaaagaa tgcaccatgc ataaaatcca atggcacttc attccaccaa gagcaccttc      5700
     gttcggtggc ttatgggagg cagcagtaaa aacggccaaa acgtcattgg cgaaaacgct      5760
     gggtagtacc cagctctcct tcgaagatta cgccactgta ctcgctcaaa tcgaggctaa      5820
     catgaatagc cgccctctca caacactgtc cagcgatcct acagaagtgg atgttctaac      5880
     tcctggccat ttcatcatcg gttcgccgct tatcagcctc ccggaaccga actacagcaa      5940
     tattcctagc aacaggctaa ctcactacca acagctacag aaattgatcc agcagcattg      6000
     ggaccgatgg cggaaagaat accttacgga actaaaccgt cagcgcgaaa aatcaacgtc      6060
     tccaacagat attcacgtcg ggcaaatcgt tttggttcag gaagacggaa aaccttctgt      6120
     gtcttggcct cttgcacgca tcgaacaaat acatcccgga gcggataatg tggtacgagt      6180
     cgtgacattg aagacttcca gcgggcttta taaacgacca atttcccgaa tatttccact      6240
     tcctttcgac cagccaccat ttgccgactc accagaaacc tgaaatgcta aaaagataag      6300
     gaaataatta ataattaccg tcgaaaattg cattaatttg atgaaactga tgctttgcaa      6360
     atcatcttcc atcatggcgt tctgttaagg taaatttgag ctatcaaatt taggtggccg      6420
     gcta                                                                   6424
//
ID   BEL-828_AA-LTR repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-828_AA-I;
KW   BEL-828_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-528
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-528
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2042-2042 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 528 BP; 171 A; 85 C; 121 G; 151 T; 0 other;
     tgttggacga aaaaggctat ggtaggcgaa ttagggtgat tgaagtacta gaagcaaaag        60
     tgtaacctag gctgaattct agttagaaag cttccgaaaa atgccgacgt ccgaatgatt       120
     acgaagcgac cgtttctttt cgtcaatcgt gataatataa aagccgcatc atccattttt       180
     agattgttag ttgtttaatt gtatagcgca cccggtcacc gatttgtaag aagtagtttg       240
     tagaatatat gtatagtgta aaaacgttaa aatacagtgt tgcgttaatt gtccaataaa       300
     atgtgtaagt gtaaagagtg tgtatagagt gaataaatta aaactgctcg aaaagctgtg       360
     tgtggttgct gcagtaacta actgttagaa gaaagtctcc cagtgaaagc ttttgagccc       420
     gtgaattcta cccactctta aactagagga acgactcgat ttgtggaact ggcaaaggta       480
     atacgcctcg gataatttac cagaacgcta tttccggagg tcacaaca                    528
//
ID   BEL-829_AA-I repbase;    DNA;    INV; 6766 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-829_;
KW   BEL-829_AA-I; BEL-829_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6766
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6766
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2118-2118 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6766 BP; 1869 A; 1561 C; 1538 G; 1798 T; 0 other;
     ttggtgccgt gaccaggatt gtgttccaag ggaacgacgc tccattggaa cggccatcat        60
     ccgcgcagac acaaagggac ctgcgccata ctggaaggat cactactact attggtgtcg       120
     ccataattac cacgatcacg gattaattgg aaacagccat ctcacttcaa ttgatgtatt       180
     ggatggtcga cgccattgga aactgctgaa gaaccagctg ggattaataa ttcaaggcct       240
     gttagacagg ctcacaaggt gagtacctgt ccaacaaact atttactatt ttcatcccta       300
     cctggtgggt ttttcatccc atttctcggt actacacatc tacgattgaa cttgaggatc       360
     gttcggttcc agacgacgaa aggaggactc ggaacgtcgg taccacggag gattgaatca       420
     acgtatcgga atctgcatgt atcaccgtaa aaagtttgat ccttcgaata aaaagtttgg       480
     aactcaaccg ttactttcaa ctatattgcc ctgagccctg cactgaaccc cttcattggc       540
     atattacgaa tctctggata gaaaagggac tacgttcgga ttattttgtc atacaaggcc       600
     tatcgaacag gctcacctgg tgagtagctg tccgacaatc tatctacagt gttgaaggtg       660
     cttctcttgt gcatattgct tgcagcaact tgccttctgt gttctcgatt ggactgctac       720
     gttattggtg aggagtaatt ttgcttacga gagattgggg tgcactgtga catattcccc       780
     tggaattgtg gattatatta tacaaggcct gtcgaacagg tccacagggt gagtacctgt       840
     ccgacaatcc accctacagt gcgaaggtgc ttctcttgtg catattgctt gcagaaactt       900
     gccttctgtg ttctcgattg gactgctacg ttattggtga ggagttgttt tgcttacggg       960
     agattggggc gcactgtgac atattcccct ggaaatctgg ataatattat tcaaggccta      1020
     tcgaacaggt ccacaaggtg agtacctgtc caacaatcta ctctacagtg cgaaggtgct      1080
     tctcttgtgg atattgcttc tagagatcac tgccatcaaa tttatacgga gtctttatac      1140
     tgagacatac tgtaatacgt tgaattgaat actcaaggaa atttgtcatc ggcggagtaa      1200
     ttaaagaaat acaaggcctc tttgacaggc tcacagggtg agtacctgtc caacccgtcg      1260
     tatttctctc gcaaggggtg cttctctttg agtgtaattg cagctcgtcg gtttcaagat      1320
     tggcactctg gcagcatcat gggaggaaag aagcttaagc caatgatcca tgtacgggac      1380
     agtatcgtcg acttcttgaa tcgcacagaa accttcttgt ggaatacggg atcaccgagc      1440
     gaacttcaaa tcaaatttcg tttggaaaag ctcgaaacga agtgggatga attcgagaaa      1500
     atccaatccg agattgaggg ggcagacgat cacgaggaaa atattgagca acatcgacaa      1560
     gtaagagccg agtttgagga gaaatacttt gatgtaaggg cagggttggt agccaaattg      1620
     ccgcatggac aaaatatgag ccagaatgtt tcagttcctg taacagcagg tgagacgaac      1680
     aacgtgcatg cgtacgtgcg actgccgcaa attaatttgc cagaatttga cggccacttt      1740
     gaaaaatggc ttgcattcca tgacacgttc aaggctctta tcgactcttc cgctgaactc      1800
     agtgatatac aaaaatttca ctacctacga gcctcattga aggatgatgc tctgaagttg      1860
     gttgattcct ttcctgtgag cgatgcaaat tacaggattg cttgggatag cttggtagca      1920
     cgattttcca acaagtatct tttgaagaag cgacacttga acgcattatt tgagtatccc      1980
     aaaatgcgaa aagagtcagc gactggaatt cacgagctca tcgattgttt tgaacgaaac      2040
     acaaaaatac tgaatcagtt aggagaacgc actagtgaat ggggagcgat gttgactcat      2100
     ttgttggttt caaagcttga tgacgtcagt caaaaacgtt gggaggagca cgcttcagga      2160
     gtcgatgaac catctttttc ttttcttatc gagtttctaa agaaacaaac tcgtgttttg      2220
     gatgcggttt cagtggatca agaattagca acttcgaatt cctcaaatgt aagcaaatct      2280
     cgtccaacaa aggtttcggt caactcggcg actgaaaatt caattccgaa ctgtgtggtg      2340
     tgcagtgaag aacattttat ttcgcgatgt ccaacgttca gcggtttgcc agtagacaag      2400
     cggctgcatc tcacaaattc taaacggttg tgcagtaact gcttgggtcg gaaccacttg      2460
     gcacgagatt gtccatccaa gtttcgctgc agaacttgct ctagaaaaca tcacactctg      2520
     ctacatccgg gtttccctgg atctggttcc tctgctacta ccactactac tacggattta      2580
     gtcatgcttc cggaaacccc atccgctacg ggtgatgtac cgaactccat ctctctcgat      2640
     tctagtccga ttccaacaat gtctactaac gtagcgacgg gggttcaatg ctcacatatt      2700
     tttctactaa cgattgtatt ggaggtcaaa gacaaatggg gaaggacaca tctcgcgagg      2760
     gctcttttgg actccggctc acaagccaac ctaatgacgg agcatctatg tcaacttctg      2820
     aagttaccgc gcagcgagaa gaaagtggag atcagcggaa tcggatgcgc acgacgacaa      2880
     atctcttgtg aagtctccac tattatcagt tctcgcatcc ggaacttttc tatgcctatg      2940
     gatttcttgg tgctagggca ggtcaccgat gaccaaccgt cttcatccct tccattagca      3000
     aattggacgc ctccagcaga aatgcagctc gctgacccca atttttttct ctctggtccg      3060
     gtggacatcg tgctaggttc ccagttcttc tacgattttc acttacttga tggtggccgg      3120
     ctacaaattc ggaaattcga cggtgcactg ccagtgttcg tcaacacggt gtttggctgg      3180
     gtagctgcag gcgaatgcga ttggaaaagg gcagactcta gaatcagctg caacttggcg      3240
     gtaacagaat cgatagataa aagtattgag cggttctggg ccatcgagga actaatagag      3300
     gctaaaccta gatcacagga agaagaagac tgcgagaatc attttgtaca aaccgtcaca      3360
     cgagacgaga caggaagata catcgttaga tacccgaaac atataggctt caatgaactg      3420
     ataggagaat cgagagtttc agcaatacgg cggttccaac aattagaaag acgtttggga      3480
     cgagatgctg atgtacggaa gcgctacaac gaatttatgc aagaatatat cgacctaggc      3540
     cacatgaatc ttatcggtac catcgagact gttgaggacg atagacaaac cgtctgctat      3600
     ctaccgcatc accccgtttt taaagaatcg agtaccacca caaaacttcg tgtggttttc      3660
     gatgggtcgg caaaaacttc caccaatcgt tctctaaatg aagcactgct taccgggccg      3720
     gttatacaag atgacctcct ggacctcatg cttcgatttc ggaaataccc tgtcgcactt      3780
     gtagccgatg tggaaaaaat gtatcgtcag attcgtattc atccaaaaga tactccactt      3840
     caacggatta tctggcgttt tgaccctgct gaacccatca agatctatga actgcaaaca      3900
     gtaacctacg gactgtctcc ctcgtcgttt ttggctactc gagtgcttca gaaactagca      3960
     gaagatgttg gtaaacggta tgaaatagca gcaccgagag taatgaaaga tttttacatg      4020
     gacgacttca tctctggagc gaattcggta gaacaagctc gaaaactccg gaaggacgtt      4080
     caagcgttga tgtcagaagg cggactacaa ctgcggaaat ggaattccaa ccgaccagaa      4140
     gtcctagacg ataaaccgga tgataatatt ccattaacaa tgcattttga ttcagatcaa      4200
     aaggtcaaaa cactcggagt atcttgggaa acggaatcag accagtttga gatagaagta      4260
     cagaaactca agatcgacga aaaatggact aagcgcagga tattctcggc aattgcacaa      4320
     ctttacgacc ctcttggtct cgtctccccg gtagttgctt gggcaaaaat acgaatgcaa      4380
     catttatggt tagcttccgt cgattgggat gatcctgttc cggaagacat ttctctgaag      4440
     tggcagaatt tttacgaaca gttaccctta ttgcgtactt ttaaggcacc ccggttcgtt      4500
     ttcgcatttg atccagatga aatccagttt catgtcttta gcgatgcttc agaggttgga      4560
     tatggtgctt gtatatatgc tcgatctact ggcaagggcg gcctaatcaa atctgagctc      4620
     atttcatcaa aatctcgcgt agcaccgctt aagcgcatca gcttacctcg cttggaactc      4680
     tgtgctgctc ttttgggagc aaagctctat gctcgggttt cggcagcgct gggaatggag      4740
     ggagttcctt gctggttttg gtcggattca accgtaacac tacattggat acgtgcacca      4800
     cccaacactt ggcagacttt tattggtaac cgtacctctg aaatacaaca cctcacacat      4860
     gggcatactt ggaatcacgt gaaaggagtg gacaaccctg ctgactacat ttctcgtggt      4920
     atgcaaccga tagacttcgt ggagaatcct atttggcaat gcggtccatc ttggcttcta      4980
     aaaagtaagg aacactggcc ggtacaacgg cttttggatt cagtttctga tgaagtgttg      5040
     gagaaaagaa aacctacgct cattacaatg atcaatgttg cccctaccga tacttctctg      5100
     ttcgagcggt attcttcatt ttggaagctc actcgtgtaa ccgcatatgt tcttcgcttc      5160
     ataaaccgtt gtcgccgaag gcatcacgaa catggattct ttattactgt tcaggaactg      5220
     caatccgcca aggaggcact ggtaaaagct gtgcagcatc acgttttcgt tgaagaaacc      5280
     aaagctctca aaaagaaaca acccatctca tcgaagtccc ctttgaaaaa ccttcgcatc      5340
     gttctagact cgaaaggtat ccttcgtgta ggtggccggc tccaattatc aggcgaagaa      5400
     tttcaaacga agcacccaat ggttctcccc agtaaacacc atctcacaag actgattgca      5460
     gaacattacc atgccctatc attgcattct ggcccgcgaa tgacattggc ttctatgcga      5520
     caagagtact ggcctatacg cggtagagag ctcgtcaatt atgtgtgtcg taaatgccac      5580
     aactgttttc ggcaccaccc tgttcccatt acccaaccaa ctggccaact cccaaagacc      5640
     cgaaccaccc ctagcagacc attttcaatc actggagtcg actattgtgg tccagtgtac      5700
     atgaaaccaa tccaccgtcg tgccgccccc cagaaggcat ttatcgccgt gtttgtctgc      5760
     ttcgccacta aagcagtcca tttagagctt gtgtgtgatc tctctacgga agcttttatt      5820
     gctgccttac gacgtttcat tgcacgtcgt ggtcttccta cagagatgta ttcagacaat      5880
     ggaacaaact tccaaggagc gaagaacact ttggcagatt tgtatgaact cctcaatgac      5940
     tctcaccatc aacagagaac aattgatgaa tgcagcaaga atggtataaa gtggcgcttc      6000
     attcctcctc gagctccaaa ctttggtggt ttatgggagg ccgccgtaaa gactgcaaaa      6060
     acatcgcttt ccaagactat cggtaatgca cgactatcat acgaggatta cgtgactgtc      6120
     cttacgcaag tggaggcaaa catgaataca cgcccactca ccccactgtc ggaggacccc      6180
     gatgaacttg acgtccttac tccaggacat tttttgaccg ggtcatcgct cgcaacgctt      6240
     ccagatcctg actactccga gataccacca aataggttga aacactacca gcaactgcag      6300
     cagctcgtcc agcagcattg gacccgttgg aggaaggagt atctgacgga acttaattgt      6360
     cagcctaaaa aatcttcagc accggtcgat attttcgttg gccaattagt cttagtgaag      6420
     gatgacaata aatcgccagc tgtctggcca ctcgcaagaa tcctgtcggt gcatccagga      6480
     gacgatcaaa tcgttcgtgt cgtcacggtg aaaacaacag ctggagttta tactcgtcct      6540
     gtatcgaaaa tctatccatt acctttcgac gaaaacttga cgcagcggac agcagacgaa      6600
     tcgctagaaa gcggacatga accagcagca atcttagtag aatgatctgt gtttttgttg      6660
     agtattattt gttgaattct atcaaatttt gagttttcaa ttccatgttt tagataatgc      6720
     taaggaagaa tgtaaatttt gtaaacaaat ttaggtggcc ggctta                     6766
//
ID   BEL-829_AA-LTR repbase;    DNA;    INV; 531 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-829_AA-I;
KW   BEL-829_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-531
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-531
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2131-2131 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 531 BP; 171 A; 90 C; 117 G; 153 T; 0 other;
     tgttgatgat gttgacaggt ttaggaaacg agaaagagag gcgaaaatta ggtcaactaa        60
     aatttatgct ttaaacgtca ttacgaaaga gagatgcaaa ccgccacccg acactgaaac       120
     tatttgtcct tttctcttta tgttttatgt atttacgaac gtaaaagcag aagggatttc       180
     attttttgtg cttacttata gttcgacctt cgtaacagat agacgtaatg taatagaaga       240
     aatagtcaat aaagaaatta gtgtagaagt agtgtagtac tgtgaataaa ggcgtttata       300
     ataaagtgat gttgtagtga tttttaaaag tggttactta ccttttcgga ccggaatacg       360
     accatactta cctggagcgt cgacaccata accctcgtcc ccgttgttgc tatcgtcatc       420
     gttgtacctg taaaggagaa aggagatttc ggggccaaac tgtgtcacca gcagtgggca       480
     ttggattcaa tcaccaaaaa acggttggaa cacatacggt aggtcacaac a                531
//
ID   BEL-82_AA-I repbase;    DNA;    INV; 6167 BP.
XX
AC   AAGE02026656;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-82_AA_;
KW   BEL-82_AA-LTR; BEL-82_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6167
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026656; Positions   18625   12459.
XX
CC   'GTGAC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           317..1669
FT                 /product="BEL-82_AA-I_2p"
FT                 /translation="MLAVPEKESKKGGKSTAGSKTSRKSKKTVGEKSVTSS
FT                 VRARMAMELKVLEEQQRIQEEELAAEKEFKDLRLKHEQELQEKQRAFEAQK
FT                 LADEKAFLERKMSEEQEYRKQQMAIRKQSLEEKVKLVRQMSERGSSATSGI
FT                 TSVPDSREKVENWLKISGQQTAGKTLESTSAVRPAVNTEEESRGLYNGATS
FT                 AIPKTNVGTPFVNNSDLPIRTVFVPTQTGTFPVVRQQLAGMNLEEDGRQAD
FT                 GNIGFRESNVRAQTETRPQGMSNNRQEECWSNNRPNTGVPMAGGGRRVAFD
FT                 VEDFDGPTNRQLAARQVMGKDLPPFSGRPEEWPLWFSNSQRSTTTCGFSDD
FT                 ENLIRLQRCLKGEALDTVRSKLLCPSSVPHVIRTLEMRYGRPGTLIRIMTE
FT                 RIRQLPSPRINDLNSIIEFGLAVDSLVEHLRNSGEQSHLDIHPYFTIWLLS
FT                 CRSTIA"
FT   CDS           2347..5499
FT                 /product="BEL-82_AA-I_1p"
FT                 /translation="MEPLGLQWTGNIKRNESKSRRVTMEVSGAGSIKRFLL
FT                 SDARTVGSLLLPSQSMDYGNLAEKYPYLRGLPLQDYSNVSPKILIGLDNLK
FT                 LTVPQKIREGGWKDPIAAKSRLGWSIYGCSQAPTMSVICGFHFGGWTDPDQ
FT                 ELNELVRDFFTLESAGVTGPPRLLESEEDKRSRMLLETTTRRVPTGFETGL
FT                 LWKTNDVRFPDSRGMASRRLRALERKLVNKPELHDNVCLQVRQYVEKGYAH
FT                 VATKEELTQTPLDEAWYLPLGVHQNPKKPNKVRLTWDGKATVQGVSLNSAL
FT                 LKGPDMLSSLPGVLSHFRLFRYALTGDIKEMFHRIRIREEDRQFQRFLWRN
FT                 DVSQDPVVYVMDVATFGSTCSPCSAQYVKNRNASEFSGEYPRAAYAINHYH
FT                 YVDDYLDSYGTREEAIKVGKEVKMIHSKGGFELRNFLSNDAEIAARVGAES
FT                 EEIDKSLSLDRPEGVESVLGMRWNPGSDCFTYDLTMRSNLADIVKEGHIPT
FT                 KREVLRVVMSLFDPLGLIAFFLVHGKILMQDIWSSRAHWDDQINEDLNLRW
FT                 IEWSSLLPQLNTVQIPRCYFPKAEADVYSTLQVHVFVDASEKAYSCAVYFR
FT                 VLGPDGPLVSLVGAKSKVAPLKMLTIPRLELQAAVLGTRLLNSVISMHGIP
FT                 VSQRFLWSDSACVLSWLQSEQRRYHQYVGFRISEILSSTEVNEWRWIPSEL
FT                 NVADDATKWGSGPKIDTSSRWFVGPEFLQLPEENWPRSCSNRWTTEEELRS
FT                 CNVHVNRPELVDVARFSRWERLHRTMAYVQRFIHNLRRSLRGECLEKGALM
FT                 QQELKKADEILWQQAQRRFYGVEIGLLQETSGTPAAQHAAVPKSSSIHKLW
FT                 PFMDQNGVVRKRSRLAAASWIADEVKYPVILPREHPISFLLTDWFHRRFRH
FT                 ANRETVVNEMRQQFEIPKLRSLVAKVSRSCMKCRIRRAMPHSPPMAPLPEV
FT                 RLTPYVRPFTFVGVDYFGPVFVKTGRSNAKRWIALFTCLTIRAVHMEVVHS
FT                 LTTESCVMAVRRFVSRRGSPAEIYSDNGDELPWSRESTEARNRGA"
XX
SQ   Sequence 6167 BP; 1657 A; 1406 C; 1703 G; 1401 T; 0 other;
     aaacctttag aaatttatca cactggagcg ttccagagca gcaatggcag gagccggcat        60
     ggatgattca caaagcgaaa ggagctgtgc cacttgcaat cgaccggatt cagtcgatga       120
     tatggttgct tgtgattcat gccagaaatg gtttcattag tcgtgcgcga aagtggatgc       180
     tggcgtcaag aatcgtgagt ggtattgttc catctgtata cccctgctga gagctaaatc       240
     tgctgaggtg tcggagcaac tccaaggtgt ttctgctggt caagccaagt ccgatgtggt       300
     acagaacgga cagtcgatgc tggcagtacc ggagaaggag tctaagaagg gcggtaagtc       360
     tacagcaggt agtaagacgt ctaggaagtc aaagaagaca gttggtgaaa aaagcgttac       420
     atccagtgtg cgtgcacgta tggctatgga gctgaaggtc ctggaggaac agcaacgtat       480
     ccaggaagag gagttagcgg cggagaagga gtttaaagat ttgcggttga agcatgagca       540
     ggaattgcaa gagaagcaaa gggcatttga ggcacagaag cttgcagacg aaaaggcatt       600
     tttggaacgg aagatgtccg aagaacagga gtataggaag caacagatgg caattaggaa       660
     gcaatcgttg gaggagaagg tgaaactggt gcggcaaatg tcagaacgtg gcagtagtgc       720
     tacgagcggc ataacaagtg ttccggattc gagggagaaa gtagagaatt ggctgaagat       780
     atcaggacag cagacagcgg gaaaaacttt ggaatccacg tcagcagttc gtccagctgt       840
     aaatactgaa gaagaatcca gaggactata caatggcgcc acatcagcta ttcccaagac       900
     caacgttggc actcccttcg tgaacaacag tgacttgccg ataagaactg tttttgttcc       960
     gacgcaaact ggaacttttc ctgttgtaag acaacagttg gccggtatga acctggagga      1020
     agatggcagg caggcggatg ggaacatcgg gttcagggaa tctaacgttc gtgcgcaaac      1080
     agaaactcgt ccacagggta tgtctaacaa ccgtcaagag gagtgttggt ccaataatag      1140
     acctaatact ggcgttccaa tggccggcgg tgggcgtcgt gtagctttcg atgtcgagga      1200
     ttttgacgga ccaacaaatc ggcaattagc ggcgcgtcag gtcatgggta aggatctccc      1260
     accattttcg ggtagaccgg aggagtggcc actatggttc agcaactctc agcgttcgac      1320
     cactacctgc ggcttctcag atgacgaaaa tcttatcaga ttgcaacgct gcttaaaagg      1380
     ggaagcactc gacactgtga ggagtaaatt gctttgccct agcagtgtac ctcacgtgat      1440
     taggacgctg gaaatgcgtt atggtcgacc aggtacgctg attcgtataa tgacggaacg      1500
     tattcgccag ttaccatcgc ccaggattaa cgatctgaac agtatcatcg agttcggatt      1560
     agcagtcgac agtctggtgg aacacttaag gaattcagga gagcagtccc atctggacat      1620
     ccatccctac ttcacgatct ggttgctaag ctgccggtcg actatcgcat gaagtgggcg      1680
     gcgtataaaa gttctctacg tcatgcaaac tttactgatt tcggctgctt tatgtccaca      1740
     atggtagagt tagcctacga agttgcagat gactttgttc ctgtaaaatt caacaagaca      1800
     gttaatcagt cgaagcccaa ggagcgagcg tttctgcagg cacactctga atcttctgca      1860
     cctgccagta aagatgtccc gagtagcagt attaaagaac gaccggcaaa gaaaacctgc      1920
     gttgcgtgca aggcggaagg acacaaaatc gtggattgtt ccagattcaa gcagatgaac      1980
     atcgatgagc gattcaaagt ggtgcagtgg ttatgcagga cgtgcctaaa tcagcatgga      2040
     aggtggccgt gtaagtcgtg gaaaggttgc gaaatacgag attgccggat gcggcatcat      2100
     acccttttgc accccaccaa cgggacaaca aaaaaaaaaa ccccaccaac gggacaacaa      2160
     acgtggctgt tttaaccaac catttgggag aattccaatc gctgggtggt ccactcttca      2220
     gaatcattcc agtcactcta tacggaaacg gctgccaggt ccaacgtctt cgcattcatc      2280
     gatgaaggat ctcagctgac tcttctagag aataccgtcg ccgagaagct tggagtcgaa      2340
     ggtcctatgg aaccacttgg cctacaatgg accggaaata tcaagcggaa cgagtcaaaa      2400
     tcccggcgag tcactatgga ggtttctggc gctggatcaa tcaaaaggtt cctactttct      2460
     gacgctcgga ctgtgggtag tctgctgctt ccatcgcaat caatggacta cggaaacctg      2520
     gcggagaaat atccgtacct gcgaggatta ccacttcaag actattcgaa cgtatcgcct      2580
     aagatcctca tcggtcttga caatttgaaa ctcactgtgc cacagaagat tagggaaggt      2640
     ggttggaagg acccaatcgc ggcaaaaagc cggcttggat ggagcatcta cggatgttcg      2700
     caggcgccaa cgatgtcagt aatatgtggg tttcattttg gaggatggac cgatccggat      2760
     caagagctca acgaactagt tcgcgacttc ttcaccttgg agagtgcagg cgtcacaggt      2820
     ccaccgcgcc tgttagaatc agaggaggac aaaagaagca gaatgctgtt ggaaacaacg      2880
     actcgcagag tcccaaccgg attcgaaacc ggcctcttat ggaagaccaa cgatgtgcga      2940
     tttccggata gccgaggcat ggcttctcgc agacttcgtg cactggaaag aaaactcgtc      3000
     aacaaacccg agttacacga taatgtctgt cttcaagttc gacagtatgt cgagaagggc      3060
     tatgctcatg tggccaccaa agaggagtta acgcagacgc ccctggatga agcgtggtat      3120
     ctgccattag gtgtgcatca gaacccaaag aagccgaaca aggttcgtct gacgtgggat      3180
     ggaaaagcaa ctgttcaagg agtgtcgctc aattcggctc ttttgaaggg accggatatg      3240
     ctgtcctcac taccaggagt actcagccac tttcgcctgt tccgctatgc attgacaggc      3300
     gacatcaagg agatgttcca ccgcatacgt atccgtgaag aagatcgcca attccagagg      3360
     tttctgtgga gaaatgatgt cagccaggat cccgtcgtgt acgtgatgga tgttgcgacg      3420
     ttcgggtcca cctgctcccc ttgttcagcc caatacgtta aaaaccgcaa cgctagcgag      3480
     ttttcaggag agtatccacg ggctgcgtac gcaatcaacc attaccatta cgtggatgac      3540
     tacttagaca gctacggaac acgcgaggaa gcgatcaagg tcggaaagga ggtgaagatg      3600
     atacatagca aaggcggttt cgagctgcgc aacttcctct cgaatgacgc cgagatagct      3660
     gcaagagtag gagcagaatc cgaggagatc gacaagtcct tgtcgctgga caggccagaa      3720
     ggtgttgagt cggtactagg aatgaggtgg aatcccggaa gtgactgttt cacgtacgat      3780
     ctaaccatgc gtagcaatct ggcggatatt gtcaaggagg gtcatatacc gactaagcga      3840
     gaagtccttc gagtggttat gagccttttt gatcctcttg ggctgattgc gttcttcctg      3900
     gtgcacggga aaatcctcat gcaggacata tggtcttctc gagcacattg ggatgaccag      3960
     atcaacgagg acttgaactt gcggtggatc gaatggagta gtcttctgcc tcagcttaac      4020
     acagtccaga ttccccgttg ttactttccc aaggctgaag cggatgtgta ttccacactt      4080
     caagtacacg tattcgtgga cgctagcgag aaggcttatt catgtgcggt ttatttccgc      4140
     gttctaggac cagacggccc tttagtctca ctcgttggcg cgaaatccaa agtggcccca      4200
     ctaaaaatgt tgacgattcc acgcctggaa cttcaagccg ctgtcctggg aactcgcctc      4260
     ctgaacagtg ttatttccat gcacggcatt ccagtttcgc aacgattttt gtggtcagat      4320
     tcggcgtgtg tactgtcatg gcttcaatcg gaacaacgcc ggtaccatca gtatgttgga      4380
     ttccgtatca gcgaaatact ttcgtccacc gaagtaaacg agtggaggtg gataccttct      4440
     gaattgaatg tagcagacga cgccactaaa tggggttccg ggccgaagat tgatacaagt      4500
     agccgatggt tcgtagggcc ggagtttctc caactgccgg aagaaaactg gccacgtagc      4560
     tgtagcaacc gttggactac cgaagaagaa cttcgctcct gcaatgtgca tgtcaacagg      4620
     cctgaactag tggacgtagc ccgtttcagc cgatgggaac gacttcatcg tacgatggca      4680
     tacgtccagc gattcataca caaccttcgg cgatctcttc gtggtgaatg tttggaaaaa      4740
     ggtgctttga tgcaacaaga gctgaagaaa gcggacgaaa ttctctggca gcaggcgcag      4800
     cgaagattct acggtgtcga aattggactt ctgcaggaaa ctagtggtac accggcagct      4860
     caacacgctg ctgtgccgaa gtcaagcagt atccataaac tgtggccgtt catggaccag      4920
     aacggagtgg tacgcaagcg aagtcgtctt gcggcagctt cttggatagc ggacgaagtt      4980
     aaataccctg tgattctgcc aagagagcac ccgattagct tccttctaac ggattggttc      5040
     caccgtcgct tccgccatgc caaccgggaa acagtcgtca acgagatgcg gcaacagttt      5100
     gaaatcccaa agctgcgatc actagtagca aaggtatccc gaagttgtat gaagtgtcgt      5160
     atccgccgag ccatgcctca ttcgccgcca atggcaccgt tacccgaagt gcgactcacg      5220
     ccctacgtac gtccattcac ctttgttggc gtagattact ttggacctgt atttgtgaaa      5280
     acgggacgta gcaatgccaa acggtggata gcattattca catgcctaac tatacgggcc      5340
     gtgcatatgg aggtggtgca tagtttgaca acagaatctt gtgtcatggc agtccgacgg      5400
     tttgtctcca ggcgaggttc tccggcggaa atatattcgg acaacggtga cgaacttcca      5460
     tggagcagag aatcaactga agcgagaaat cgaggagcgt aatcatcgtc tagcaacagt      5520
     attcaccaat tcttgcacac gctggatgtt caatcctcct ggtgccccac atatgggagg      5580
     ggtgtgggaa aggatggtcc gttccgtaaa ggctgcgatc gggactattc tggagactca      5640
     acgtcgaccg gatgacgaat tattggagac ggtgatactt gaagcggagg caatgatcaa      5700
     tagtcgtccg ctgacatata ttccactcga tttcgcggat caggaagccc taaccccgaa      5760
     ccatttcctg cttggaagct ccagcggggt gaaacagtta ccggtcgagc ctgtagacta      5820
     ccggtcaact ctgagaagtg gatggaagct cgcgcagtat ctggtggacg gtttttggaa      5880
     gcgttggcta aaagagtatc tgccagtgat ttcgcggcgt tccaaatggt ttgccgaagt      5940
     gagagagttg aagaaaggag atttggtgtt cgtagtggac ggaatgatca ggaaccaatg      6000
     gctaagagga aaggtagaac atgttgtgtg cggtacagat ggacgagtac gtcaagcatg      6060
     ggtgcagacg gcgaccggag tacttcgcag gccggtggtg aagctggcct taatcgacgt      6120
     catggaggaa cgtaaaccac ccctcgagtg ctttacgggc gggggat                    6167
//
ID   BEL-82_AA-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   AAGE02026656;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-82_AA_;
KW   BEL-82_AA-I; BEL-82_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-539
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026656; Positions   12458   11920.
XX
SQ   Sequence 539 BP; 199 A; 88 C; 96 G; 156 T; 0 other;
     tgtgacgacg agagcccccc ggcgctacat catcaagatt taccacaggg aagtgaaggc        60
     gtgtcggcat atgtgtcggc agacgggaat gaaccctata cagcggagta gtgataagag       120
     aagaaaatgt aaacataatc gaacaaaaag atctattgca gtattgaaca catgcaggtc       180
     taaaatttct ataattcatg caaattaagt tcataaatct atcaatttgt tcctaacttt       240
     attactatta tgtacaattg gttctggtga acagtgaaaa ctatacagta agtgaaatac       300
     tttattatca cgataatttg ttaacttaat gaatttgttc ctatgtacag ctttctactt       360
     aacctaaatt tgataaaacc taaaggagaa tagtacggca aaactgataa atttgtgagt       420
     aacactattg aattatttat aaattgtaaa atcctaaatt gcaataaaaa ttctagctaa       480
     agcagttccc aaacaacaac tacgagttct gtggggcgct aagaaaatca gttgtaaca        539
//
ID   BEL-82_CQ-I repbase;    DNA;    INV; 5636 BP.
XX
AC   AAWU01005025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-82_CQ_;
KW   BEL-82_CQ-LTR; BEL-82_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 305-305 (2011).
XX
DR   GenBank; AAWU01005025; Positions    6237     602.
XX
CC   Positions [4628-5218] - Integrase core
CC   'AATAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           200..5605
FT                 /product="BEL-82_CQ-I_1p"
FT                 /translation="MHQPRARETEEQKEEKKTFYSPIREQILEHKRKELKR
FT                 KMEEKVKALVRQRGAVKSKLTRISTALVDVVEGRQNPNLKNIPFLRQNSKN
FT                 VDACYREYNTIQNEIVALPLSDDARTEQENRYIEFEHLYNEVSIKLETLLE
FT                 TAVKREQRLSLASANQLVPANAAAAVVQPPPLSVPLPSFDGNYENWKSFKC
FT                 MFTTIMARYQTESPAIKLYHLKDCMKGKAMGFIDEETIKNNDYDAAWASLE
FT                 ERFEDNRLIIDKHIEALFNLPKIARESAEELRKLLDTCTKNVNALKNLDLP
FT                 VVGLGEQMLLNVLSAKMDKDTRKTWETRQKAGQLPAYAATIAFLKERCKIL
FT                 EKIEVNTKSNSEATKPSRAVARSNTLVSTTEQKCAVCKSDHELWKCDQFKN
FT                 YSAKEKYSVLRKSGSCYNCLQRGHRLSECSSSSCQKCGKRHHTLLHVGDKK
FT                 PADPSSKNEEADLCRSKEPQVRTEQATGSSSTRSETTATLCAQVERSVNVT
FT                 LLSTAVVLAYGSGGVSYPCRVLLDSASQTHFVTEQFAKLLALERQPASFLV
FT                 CGLNGSDTRIRSKIEVRIKSRVNEFSLALETLIAPKITGELPSYSIDVRKW
FT                 PLPPGTELADPAFFKRNKIDMLIGADVFWDLIKSEQIEMGPNLPTLRDTKL
FT                 GWIVGGSVSSASPAKLRTLCTVTENDRLSDILKQFWTIEGSDELLAPGPGD
FT                 TASNAECLEHFRRTHQRDGEGRYIVRLPFNERKNQLGDSKQMAMKRFLTVE
FT                 RRLDREPELKQQYAAFMQEYENLGHMREVRTEDADNGGPAYYLPHHCVIKP
FT                 TSTTTKLRVVFDGSARTTSGVSLNDALMTGPTVQNDLMAILLNFRCYRFAL
FT                 TLDIPKMYRQVRINPDDARFQRVFWRDDKNQPLKIFDLLTVTYGLASSPFQ
FT                 ATMTLNQLADDHGAEFPRAAAVLQSSCYIDDVLTGAQSLDDALQLQREIVG
FT                 LLRCGGFAAHKWCSNAPSILEAIPEAQQGAKLNVAELDLNALVKTLGVAWQ
FT                 PASDTFSFDVVDFESASNERLTRRKVASQVAKIFDPLGFIGPVLTAAKLIL
FT                 RGVGSLKTDWDELVPPNMGRQWQSFRRELPVLKKLRLPRWILYKEMQFVEL
FT                 HGYCDASDQAYGACIYTRLTRLDGSTVMKLVCSKSRLLPKATKKKKEISTP
FT                 RGELLAALLLARLVTKVLSSTSTTFASVNLWSDSQIVLSWIRKPPQHLQLF
FT                 VANRVAEIQRLTGAFRWGYICTDSNPADLISRGTTPNKLLKSPIWWDGPPA
FT                 VPTTTDAGPMIPDERLPELKSAVALALTAVERLKAFDDVSDFFKLRRAMAY
FT                 VARFAEFIISKRKKVTKGWLTGKEIKRAEGIIVKLVQAEAFHTEIAALLDD
FT                 KRARHRLCGLNPFLDVDGLLRVGGRIKHAFIPYDSRHQMVLPAKHPVTELL
FT                 IRHLHEENLHLGQRRLLAVVRQRFWPLNVKTTIRKVVRSCITCFRVNPTKT
FT                 SQLMGDLPSYRVQPAPTFARTGIDFAGPFWIKSNAAVRKPTITKGYVCLFV
FT                 CLCTRAIHLELVSNLSSDAFLAALRRMASRRGVPSTILSDNGTNLVGGNNE
FT                 LEELARLFQNELHQKNLDSFCSSKNIEWRFIPPRSPHFGGIWEAGVKSMKY
FT                 HLKRIVGERRLTFEELYTTLTQIEAVLNSRPLTQSSDDPNDFTAITPAHFL
FT                 IGRELQAIPEPSYLALKESTLSRWQLVQTLQQHFWKRWTKEYLPELQNRQK
FT                 WYKKTTIKPGALVLIIDRNTPPMQWPLARIVALHPGKDNVTRVVTLRTPKG
FT                 ELKRAVHEICLLPLDQEVQPEERPEEQLAKN"
XX
SQ   Sequence 5636 BP; 1430 A; 1541 C; 1561 G; 1104 T; 0 other;
     taaatttctg gtccttctgt gccgaatgaa gtagtgaacc ggttaaagtt acgggaaagt        60
     ggattttcga cggaaaatcg cgaaaatgag cattcggttc ggctaaagtg tcggtcgagt       120
     gtagcggcgc catcttgaat tcgcgagagc ccgcttcagt gaaaaaaaaa aaagatcagt       180
     gttcccagca tggaaaacga tgcaccagcc tcgcgctcgg gaaactgagg aacaaaagga       240
     agaaaagaag acgttctaca gccccatcag ggagcagatt ttggagcaca agcgaaaaga       300
     gctgaaaagg aagatggaag aaaaagtgaa agctctcgtc cgtcagcgag gggcagtgaa       360
     gtcgaaattg acgcgcatca gcacggcttt ggtcgacgta gtggagggaa ggcaaaatcc       420
     taacctcaaa aacattccgt ttttgcgtca aaactcgaaa aatgtggacg cttgttatcg       480
     tgagtacaac actatccaaa atgaaattgt cgcgttgccc ctctctgacg atgcgagaac       540
     ggaacaagag aaccgttaca ttgagttcga gcacctgtac aacgaggtca gcatcaagct       600
     ggagaccttg ttagaaaccg ccgtcaaacg ggagcagcgc ctgtcgttgg cgtcggcgaa       660
     tcagctcgtc ccggcgaatg cggctgccgc tgtggtccag ccgccgccgt tgagtgttcc       720
     gcttccgagt tttgatggaa actacgagaa ttggaagtcc ttcaagtgta tgttcacgac       780
     gatcatggcg cgctaccaga cggagtctcc ggctatcaaa ctctatcacc tcaaggattg       840
     tatgaaggga aaggcgatgg ggttcatcga tgaggagacc attaaaaaca atgattatga       900
     tgctgcctgg gccagtctgg aggagagatt cgaggacaac cgcctcatca tcgataaaca       960
     catcgaggcg ctcttcaacc tacccaagat cgccagggag agtgccgaag aactccggaa      1020
     gctactggat acgtgcacca agaacgtgaa cgccctcaag aatttggacc taccagtcgt      1080
     gggtctagga gaacagatgc tgctcaacgt tctgtctgcc aagatggaca aagacaccag      1140
     gaagacctgg gagactcgcc agaaagctgg tcagcttcca gcgtacgcag cgacgatcgc      1200
     ctttctcaag gaacgctgca agattctgga gaagatcgag gtcaacacga agtcaaactc      1260
     ggaagcgacg aagccatccc gtgcggtggc tagaagcaac acgttggtgt caacgacgga      1320
     gcaaaagtgt gcagtgtgta aaagtgacca cgagttgtgg aagtgtgatc agttcaagaa      1380
     ctacagtgcc aaagaaaagt acagtgtttt gagaaaaagt ggttcctgtt acaactgcct      1440
     acaacgtgga caccgcctca gcgagtgttc atcgagttcc tgccagaaat gtggcaaacg      1500
     ccaccacact ctgctgcacg tcggagacaa gaagccggca gatccgtcgt ccaagaacga      1560
     agaagcggat ttgtgccggt cgaaagagcc gcaggttcgg acggaacagg caactggttc      1620
     tagcagcacc cgatcggaga cgaccgcaac gctttgtgcc caggtcgaga gatccgtgaa      1680
     cgtcacgctc ctgtcaactg ccgtcgtcct ggcctacggc agtggaggcg tcagctatcc      1740
     gtgcagagtc ctcctagact cagcgtccca aacgcacttc gtgactgaac agttcgcaaa      1800
     attactcgct ctcgaaagac aacccgccag tttcctcgtc tgcggattga acggttcgga      1860
     cacgcgcatt cgatccaaga tcgaagtccg tatcaagtca cgagtcaacg aattcagctt      1920
     ggcactcgag acgctcatcg caccgaagat caccggggaa ctaccgtcct actcaatcga      1980
     cgttcgcaag tggccgctcc cgccagggac cgaactcgcg gaccctgcgt tcttcaagcg      2040
     taacaaaatc gacatgctga tcggtgcgga tgttttctgg gacctcatca agagcgagca      2100
     aatcgagatg gggccgaact tgccaacgct gcgtgacacg aaacttggct ggatcgtcgg      2160
     aggatcggtg tccagtgcaa gtccagcgaa actacgaacc ctctgcactg tgactgagaa      2220
     tgaccgcctc agcgacatcc tcaagcagtt ctggacgatc gaaggcagcg acgagctgct      2280
     ggcccccgga cccggcgaca cggcatcgaa tgccgaatgc cttgagcatt ttcgccgtac      2340
     tcaccagagg gacggcgaag gacgatacat cgtcagactc ccgttcaacg agcggaagaa      2400
     ccagttgggc gattcgaagc agatggccat gaaacgcttc ctgaccgtcg agcggcgact      2460
     cgacagagaa ccggaactca aacaacagta cgctgcattc atgcaggaat acgagaacct      2520
     gggccatatg cgtgaagtcc gcacggaaga tgcagataac ggtggaccgg cgtattatct      2580
     cccgcaccac tgtgtcatca aaccgacgag cacgacgacc aagctgcggg tggtgttcga      2640
     tggctccgcc aggaccacgt ccggcgtctc actaaacgat gccctgatga ccggaccgac      2700
     cgtccaaaac gatctgatgg cgatactcct gaacttccgg tgctaccggt tcgcgcttac      2760
     cctggacatc ccaaaaatgt atcgccaagt gagaatcaac cccgacgacg cacgatttca      2820
     gcgagtgttt tggagagacg acaagaacca gccgctgaag atctttgatt tgctgaccgt      2880
     aacgtacggt ctcgcctcgt caccgttcca agcaacgatg accctgaacc agctcgccga      2940
     cgaccacgga gcagaatttc cacgcgctgc cgctgtgtta caaagctctt gctacatcga      3000
     cgacgttttg acgggtgcgc agtctctgga cgacgcactt caactgcaac gagagatcgt      3060
     cgggttgctg cgatgcggtg gtttcgccgc acacaagtgg tgctcaaacg cgccctcgat      3120
     tctggaagcc attccggaag cacaacaagg agccaaactg aacgttgctg agctcgattt      3180
     gaacgccctc gtaaaaacac tcggagttgc ctggcaaccg gcgagcgaca cgttctcttt      3240
     cgacgtggtg gatttcgagt cagctagcaa cgagcgactc actaggcgga aggtcgccag      3300
     ccaggttgct aagatcttcg acccgttagg gttcatcggg ccggtcctga ccgcggccaa      3360
     attgatcctg cgcggagtgg ggtctctcaa gacggactgg gacgaactcg ttcccccgaa      3420
     catgggtcga caatggcagt cattccggcg tgagctgccg gttctgaaga aactccgcct      3480
     accgaggtgg attctctaca aggagatgca gttcgtggag ctgcacgggt actgcgacgc      3540
     gtcggaccaa gcctacggcg cctgcatcta cactaggttg actcgactgg acggatcgac      3600
     cgtcatgaag ctggtatgca gcaagtcgag attgctcccc aaggccacca agaagaagaa      3660
     agagatttca acaccgcgcg gcgaactgct ggcggcgcta ctgctcgctc gtttggtaac      3720
     caaggtgctg tcgtcgacaa gtacgacgtt cgcttcagtc aacttgtgga gcgactccca      3780
     aattgtactc agctggattc gaaagccacc gcaacatctg cagttgtttg tggccaatcg      3840
     agtagcagaa attcagcgac tgactggagc ttttcgctgg ggctatattt gcactgactc      3900
     caatcctgct gatttgattt cccgaggcac aactccgaac aagctgctga agagccccat      3960
     ctggtgggat ggcccgcctg cagtgccgac gacaactgac gccggaccga tgattcccga      4020
     tgaaagactc ccagaactga aatcagcggt tgcgctcgct ttgacagctg ttgaacgatt      4080
     gaaagccttc gacgacgtga gcgacttctt caagctgcga cgcgccatgg cctacgtcgc      4140
     tcgatttgca gagttcatca tttcaaagcg caagaaggtg accaaggggt ggctcactgg      4200
     taaggagatc aagcgtgcgg aaggaattat cgtgaagctg gttcaagccg aggcgttcca      4260
     caccgagatt gctgcactac tggacgacaa gagagcacgg caccggctgt gcggactcaa      4320
     cccgttcctc gacgtcgatg gcctcctgcg ggtcggtggg cgcatcaaac acgccttcat      4380
     cccgtacgac agtcgccatc agatggtgtt gccggccaag catccggtaa ccgagctcct      4440
     cattcggcac ctgcacgagg agaacttgca cctcggccaa cggagacttc tcgccgtcgt      4500
     cagacagagg ttctggccgc tcaatgtgaa gacgacgatc aggaaggtgg tccgcagctg      4560
     catcacctgt ttccgggtca acccaacgaa gacgtcgcag ctgatggggg atttgccctc      4620
     ataccgagtc cagccagcac caacgttcgc cagaaccgga atcgattttg ctggcccgtt      4680
     ctggatcaaa tccaacgctg ctgtgaggaa accaacgata acgaagggat acgtctgtct      4740
     cttcgtttgc ctgtgtacaa gagctatcca cctagagctt gtatcaaacc tttcgtccga      4800
     cgccttcctc gctgcgctgc ggcgcatggc gagccgtcgt ggtgtgccca gcaccattct      4860
     ctcggacaac ggaaccaacc tggttggtgg caacaacgaa cttgaagagt tggctcgtct      4920
     cttccagaat gagctacacc agaagaacct ggacagtttc tgcagcagca agaatatcga      4980
     gtggcgattc atccctcccc gcagcccaca ctttggagga atttgggagg ctggggtgaa      5040
     gtcgatgaaa taccacctca agcggatcgt tggagagcgc cgtctcactt tcgaagaact      5100
     ttacacgact ctcacccaaa tcgaagcagt gctcaactcg cggccgttaa cgcaatcgtc      5160
     ggacgacccg aatgacttca ctgccatcac cccggcccac tttttgattg gaagagagtt      5220
     acaagctatt ccggaaccgt cgtacctcgc cctgaaggaa tccacgctgt ccaggtggca      5280
     actggttcag acgctgcaac aacatttttg gaagaggtgg acgaaggagt accttccaga      5340
     attacagaac cgtcaaaagt ggtacaagaa aacgacgatc aaaccgggcg ccctggtgct      5400
     gatcatcgac cgcaacacgc caccgatgca gtggcctctc gctcggattg tggcgctgca      5460
     tccgggaaag gacaacgtga ccagagtcgt gacgctgagg acgcccaagg gagagctgaa      5520
     gcgtgcagtg cacgagattt gtcttctacc gttggaccag gaggtccagc cggaggagcg      5580
     accggaggag cagctggcga agaattgaaa tggttcattt caacgcccgg ggagaa          5636
//
ID   BEL-82_CQ-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   AAWU01005025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-82_CQ_;
KW   BEL-82_CQ-I; BEL-82_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 306-306 (2011).
XX
DR   GenBank; AAWU01005025; Positions     601     390.
XX
SQ   Sequence 212 BP; 65 A; 53 C; 32 G; 62 T; 0 other;
     tgttcgatga gatcgaacgc acactattac aaaaccaaaa ctgcgctacc tttgaattat        60
     attctttgct tttctttttg cgcacaccta gtttttagaa taaaccgctc attgtctagc       120
     tcgtaaccgt acgattcgca cgcgtctttc attccggccg aaatcgaagg aaaaatacga       180
     ccttaaaata cagtccacta gaacaatcta ca                                     212
//
ID   BEL-830_AA-I repbase;    DNA;    INV; 6308 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-830_;
KW   BEL-830_AA-I; BEL-830_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6308
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6308
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2119-2119 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6308 BP; 1819 A; 1460 C; 1388 G; 1641 T; 0 other;
     ttggtgccgt gaccaggata gtgatctaaa aaggccgacg ccgagacgcc attgggccat        60
     tgcacaaagg aaccacggtc ttttgattta taacaaaaac cccaaccgcc atcggaatct       120
     tggcatgtga tgatcactgg gcactgccat tgcaattcac atccggctaa attacaactt       180
     ctcagtgaat ggtttcgcgc ctcggaaatt ggaataaggt tcaacggaaa cgtttggcag       240
     agcgacgtgt ggattaggcc aacaagagct agcttggagt tattacaagg ccttactgac       300
     aggctcaata ggtgagtccc tgtccagaca ttttattcgt gattggaagg tgcttctctt       360
     gttgggagtt tcagaacaat acgtcgactc tggaacacta gttgtgacgc catcattatt       420
     tggttcaaca tcctattcat cgtggccgat cttcaaggaa taacgcctca tttctacgtt       480
     ttatcaattg ttgatgagtc ttctgaggca tagtggaatt taaacgagca tttcaactat       540
     acaaggcctg atcgacaggc tcaccaggtg agttcctgtc cttcaactaa taattctcgt       600
     tagaaggtgc tccgctgctt gcctattttt cagtattttt acgattatct cggatagctc       660
     ccgtagccgt agagtgaatc tatcattcaa ggcctggttg acaggctcac caggctccca       720
     aagttctgct gggccccgtt ccaattaatt cggatggtta ccgttgtcgt tgcgtgaaga       780
     tatcctacaa ggcctgattg acaggctcac caggtgagtt tctgtccaac gtactaccaa       840
     tatcccgcga aagtgctccg ctggttgatc tcttacagaa ggtgccatca tacgtgcgaa       900
     tcatgtcgaa gaagcttaaa aacttactac gcaccaggga caacgtggta gaattcgtct       960
     tgcgcatcga aaactacctg aacagcaccg ttcaattcga cccacaacaa gttggaattc      1020
     gactggaaaa actcgagcag aagtgggcgg aattcgagga ggttatgaat gacatcgaag      1080
     ctttggagga taacgaagac aacatgaaag agcaacagcg actgagggtg gatttcgaag      1140
     aaaaatatta cacggtaagg ggagggttgg cgaatgagtt aaccaggcag catgcaacac      1200
     aaaacacaca atcaaataac aacacatcta atgtgcaagc ttcagtacgg ctaccacaaa      1260
     ttaaccttcc ggagttcaat ggtgaatttc agaattggct cccatttcat gatacatttg      1320
     tggcgttgat agattcctct gcagagttaa gcaatatcca aaaatttcac tatttgcgtg      1380
     cttctctcaa gggtgacgct ctaaaattga tagattccta ctcgatgagt gatgcaaatt      1440
     atagggtggc ttgggatggt ttggtggctc gtttctctaa caattacctt ctcaagaaac      1500
     ggcacatgaa cgcactcttc gagtacccga gaattaaaaa ggagtgtgca gttgcgttac      1560
     acaacctcat cgactgtttc gaacggaata ccaaaattct ggaccaactg ggggagaaga      1620
     caaatggctg gggcgcaatg ttagttcatc taatggtttc gaaactggat gaaataactc      1680
     agaaacgatg ggaagaaaac gttacacccg aaaaggatcc atcgttttca tcactgatcc      1740
     aattcctcaa aaagcaaact cgtgtcttag acgcggtttc agtggaccaa cacatcttcg      1800
     cttcatcaag ttctttttcg cacgtttcta aatctcgacc gatcaaggtt tcggtcaact      1860
     cggcgaccga aaataattta ccaacctgct ttgtttgcag tgacaaacat tggatcaatc      1920
     ggtgcccgaa ttttgctgac ctacctgtgg acaaacgttt gcagctcact aacgccaagc      1980
     gcctctgtag caactgcttg gggcggaatc atctggctcg agattgtccg tcaaaattcc      2040
     gctgcaaaac atgttcaaaa aagcatcatt cgttgttgca ccctggtttt cctggttcag      2100
     gttctggtcc ttctccaatt acatctacac cggtcaacaa caacacggaa tcgattacac      2160
     catcatctgg cgctgttaca gtttctgcaa ctaccagcaa tagctcagca gcaacaattt      2220
     catctaattt ggctgtagga caacctaagt ctcatgtgtt tctgcaaacg gttctgctac      2280
     aagtgaaaga tgtatgggga agagcacatc tcgctagggc gcttctcgac tctggatcgc      2340
     aagctaactt aatgtcgaag aaactatttg aattacttcg attaacacga cgggatagga      2400
     aggtggttat tactggagtc ggcggatcac gcaatcaaac agctttcgaa gtctctacaa      2460
     cagtctcttc acgggtgcaa cgtttttcga tagccctgga attcctggta atggagaaag      2520
     ttactgacga tcagccttca acatctctct ctctggcgca ctggaaacta cccgcaaata      2580
     tggctttagc tgaccccgga ttccataact ctgctccagt cgatttggta ctcggtgctc      2640
     aacatttctt cgactttctg atacgcgatg gtggccggtt gcaagtcaaa aaattcgacg      2700
     gtgccttacc ggtatttgtt cagacaacgt ttggatgggt tgcaacaggc gaagcgaaat      2760
     gcatggatga agttaaggta gttgattgtt acgttgcaaa agcagagccg ttggaaaagg      2820
     taatcgaaaa gttttggaca gtggaggaac ttacaaataa gaaaccacgc tctcaagaag      2880
     aaaacgattg tgaggcacac ttcgtaagca cgtacacacg agacgacaca ggtcgatatg      2940
     tggtgcgtta ccctaaacac atggatttcc ataacatgat tggcgagacg aaacaaaagg      3000
     ctattcagcg attccttcaa attgaaaggc gactagtaaa agaccataat ttgcgcaaac      3060
     agtattccga ctttatgcag gaatacctgg atctcggtca tatgaaacac atcggtgaag      3120
     ccgaagattc cacactggat gacggcaaaa cggtttatta tctaccgcac catccagtgt      3180
     ttaaggaatc tagctcgact actaaagtgc gtgtggtttt cgatgggtcc gcaaagtcta      3240
     ccaccaatta ttcactaaac gatgctctac tcactggacc taacattcaa gatgaactcc      3300
     tagatttaat gattcgtttt agaagatacc ctgtcgccat agtggcagat gttgccaaaa      3360
     tgtatcgaca aatccgtgta catgaaaacg atacatcact ccaacggata gtatggcggt      3420
     ttaacactgc agcaccactt caagtgtatg agctgcagac tgtcacgtat ggattagccc      3480
     cgtcttcctt cctcgctaca cgggtattga agcaactggc attggattcg agtgataaat      3540
     acaaattcgc ttgcgaacct ttgcaggaag atttttatat ggacgatttc ttgtctgggg      3600
     ctgattctgt agaaaaggca atcgagttgc aaaaggaaat gcaaactttg atggcagaag      3660
     gaggccttga attacgcaaa tggtgctcaa ataaggtaga agttttgtac aacattccaa      3720
     acgaatcact aggagatgta tcgacgctac acttcgatga ctcgcagaag gttaaaaccc      3780
     taggagtagg gtgggtgatc ggatcggatc agttttgtat tgaaattcaa ccatcaacga      3840
     acgaagactg cttaacaaaa cgaaagattt tctcaacgat tgcgaagctg tacgatccac      3900
     tcgggttggt atctccagtc gtgtcatggg ccaaaattca catgcaacag ctttggacga      3960
     aaaacacagg gtgggatgac ccaataccag acgacatcac ggtgaaatgg aaagagtttt      4020
     cgtcgcagtt accatgccta gttggttaca aggttcctcg gtacttgttt ctcccggatt      4080
     cttcgtctgt ccaattccat gtgttcacag atgcttcaga agctggatat ggtgcatgca      4140
     tttacgcacg tacagtcgat cttaaaggaa acatcaagat agaactcgtt gcagcaaagt      4200
     caagggttgc accgttgaaa cgaatcagtt tacctcgact ggagctttgt gcagcactac      4260
     ttggggcaaa actgtatgct cgtgtatcga ctgctttacg gatggaaggc actagatgtt      4320
     gtttctggac tgattcgatg gtgactctac actggattca ggctccgcca aacacatggc      4380
     aaacgtttgt aggtaatcga acttcagaga ttcagcaact cacgaattgt cattcgtgga      4440
     atcatgtaag cgggatcaac aaccctgcgg attacatttc acgtggaatg ctcccaaacg      4500
     aattcatgac gaacactagc tggcggtgtg gtccgttatg gttatctaac gaagaggata      4560
     tttggcctaa aaagccaaac gaaattcctt cagaagattt actggaacga cgcaagacag      4620
     ttctagtagt gcaggcagat acagaccata atttcctttt ctaccgatat tcatcctttt      4680
     ggaaactgac tcgtatcaca gcactgcttc ttcgcttcaa aaaccgttgt caaggaagaa      4740
     ttgatcatag tccatcgaaa ttggtgtcag tacgagagct agaacatgcc aagaaagttc      4800
     tcgcaaagat cgcacaacag gaggttttca cagaagaact ggagagtctc aacaagaatc      4860
     gatatgtgcc taaaacgtcg tctctacgat tgctacatcc ttttctcgac gacgatggca      4920
     taatccgtct tcgtggtcgt ctagcacatt catcagaaag ctaccaaacc aagcacccta      4980
     ttattctccc taaacatcac cctcttacac gcctcatcac tgagcattac cataaaatgt      5040
     gcatgcattc aggccctcgc atgacgctag ctactatgca ccaagaattc tggccaataa      5100
     gtgggaaaca aatcgccaac tctgtgtttc gtaaatgtat gcaatgcttt cgccaaaacc      5160
     ctacccctat cgtacaaccc gtgggccaac taccgaagca gcgcactacc cctagcagag      5220
     cattcactat aactggagtt gacttttgtg gaccagttta tttaaagccc gcccaccgac      5280
     gagctgctgc acgaaaagcc ttcattgcgg tctttatatg cttcgcttcc aaagccgtac      5340
     atttggagct cgtctgcgat ttatcctctg aagctttcat cgcagcactt cgacgcttca      5400
     tctcacggcg cggcataccc acggaaattc actctgacaa cggcacaaat tttagaggag      5460
     caaacaatac cctgatcgaa ttatatcggt tattagagaa taatcacaca cgagaagcca      5520
     tcatcaaaga atgcaacttg aagcggatac agtggtattt cataccgccc cgagcacctt      5580
     ccttcggcgg attgtgggaa gcagctgtta aaaccgcgaa aacctctctg gcaaaaactc      5640
     tcggcaacac tcaactttcc tatgaagatt tcgtcactgt gttaactcaa atcgaagcta      5700
     atatgaacag ccgtccgctg acgtcgttgt cgaatgatcc tggggagctg aatgttctca      5760
     cacctggcca tttcctaatc ggtacatcgc tattgagcct tcctgaaccg gactacacca      5820
     gcatcccgag taatcgactg caccactatc acgaactaca aagactagtt caacaacatt      5880
     gggatcgatg gcgaaaggag tacctctgtg aacagaatca tcagcgtaag aaatccgtat      5940
     cggcaattga tgttcatgtt gggcaaatcg tgttagtaca agacgaaggg aaaccatctg      6000
     tatcctggcc acttgcacga attgaaaacg tacaccctgg agatgatggc attgtgcgtg      6060
     tcgtgactct tcgcacctca agtggaatct acaaacgatc aatctcacgc atttacccgc      6120
     taccatttga tcagcaaccg aacaccaagc aaatctcgcc tatgcaacag taaaacctaa      6180
     aaaagatgtt taatattagt gcatttttta agcaaattaa gtaattcctg tgttgctgca      6240
     cgcaatccat gttatgtttg ttttgctttg tatgtaaatt tgaaacgtca aatttaggtg      6300
     gccggcta                                                               6308
//
ID   BEL-830_AA-LTR repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-830_AA-I;
KW   BEL-830_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-405
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-405
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2132-2132 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 405 BP; 132 A; 74 C; 82 G; 117 T; 0 other;
     tgttgcttct ccggttgaaa aatagtatag taggtaggcg taacaacatc atgctgctgt        60
     agcgtagttt acaatgctta acaacattaa aactgctaga aaccgaaagc ttttccggga       120
     cacacgactt ctgcccgaat atagccgaga cgaatataaa gaaacccgag aagaaagtag       180
     ccatcatgct cactttgtat attagattaa tttattcgtt acttacactt ttctgagcgc       240
     agttggccac tgagaaacat tctgtgaatc tgtagtgtgc aataaagtta gaataagcaa       300
     taaaactgta tttagtgcaa taaaccgatc tttgaataaa cggaagtgtc ttgtgcgttg       360
     ttctaactgt ggattcagat cactattccg aagagggtta caaca                       405
//
ID   BEL-831_AA-I repbase;    DNA;    INV; 5438 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-831_;
KW   BEL-831_AA-I; BEL-831_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5438
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5438
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2175-2175 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(37..789,746..5410)
FT                 /product="BEL-831_AA-I_1p"
FT                 /translation="MDALRKRRDVLFERMKWEHKNSSSVKNRSPPIGEIQE
FT                 RLNKLTDMCDNFDKVQSELEETTDALVEISSIFNYRLEFEKLYYETKAIYV
FT                 EILDEANPRGSSEGTFLETPGAPVNIEDAIKLLLESQRLLMTSQAAASNTV
FT                 SQLAGRVNSMNVSGSTAEGSDTSIDIRLPTITLPIFNGDRKQWNSLKDLFE
FT                 SCIHSKKLKDSVKLQYLLSHLEGEAKRMVSSFTITDANYAEVWGKLNEFYN
FT                 KKKVHRLSISTSSTIKKKYTVSALVKEFVDQPSVSTATLHGLRTLWATSDE
FT                 VVRQLKALGPEYGTRDPWLLHLLLDKLDRETRTMWAQKIVDEENPTFDDFL
FT                 KFLEQRCDALETCASFSKRTDAAVKTERKSDSKTKPVLSSRAVHGFRTSTH
FT                 QICPHCSAGHTIYQCTGFREIPVIERRYIARNARLCFNCLKTTHSAKNCTS
FT                 STMCKHCQQRHHSLLCIESVSSTSTPSQPHRQVVVSTQTESSTKEPVTEEV
FT                 ASYVTEVKTSCTTNFISMLLTAAVKIMGKNNVFHDVRAIVDSACMNTLITK
FT                 QAFDRLGLQRRNANILVSGISDSKPRKARGSVTLQISSRFDDQTVIVVEAL
FT                 IMDSLVPNQPCEAFDIDSSIFEDVPLADPDFNKCGKIDLLLGIEVFFSILE
FT                 PGKLLGPRGAPIAQNSIFGFLVGGRFDSTSCVLDNHTLVGLSHTEDMNLDQ
FT                 ALRRFWEVEEIPKTKQLTEDEQRAVDIYHSTLSRNKSGRYVVSLPFDNTKP
FT                 ALGDSTNTAIRRFKALERKFSIDPEFRQLYANFMSEYLALGHMERIPPTEV
FT                 AISPEKCFYLPHNAVWKDVSTTTKFRVVFDASSKTASGISLNDRLLVGPNI
FT                 NEPLFNVFARWRTYKIAFCADVQKMYRQVLISREDADFQRIVFREDPDQPL
FT                 DHYRLLTVTYGIASAAYQAVATLHQIAADNQELHPLAASRIPKNFYVDDLL
FT                 SGADTVEEAEFLRDELIEVLGSGGFALRKWSTNEAQILDSETSHDEIVSVE
FT                 LPNEGDSIKALGIRWIPSDDMFYFKVTFDIHSPNTKRQLLSDSSKLFDPFG
FT                 WIAPVVVKTKILFQYLWLYDLGWDDPLPATIRDEWIELKETLYRIERIRIQ
FT                 RWIPHSMGRLQLHGFADASEAAYAAVVYARSVDQDGRIHTNLVAAKTKVAP
FT                 IQQVSLPRLELMAAELLSDLMIKLMESFSHLDVELYAWSDSSIVLQWLATH
FT                 PRKWKTFVANRTSKILEHLPTKHWNHVSTKDNPADCASRGLTPTELVLHPL
FT                 WWRGPGWLQEAESSWPLSKRPQIEDDDILEARETITCLNTTSCAHHDYSAE
FT                 NTLLRRSPSLSRARRSICWVNRFVNNMLAIIRGHARKCGVLTPSEIEDGCL
FT                 QLARAAQYDCFKAELESLQKQKVLSNSSKLKTLYPFLDSSGTLRVGGRLQN
FT                 SDQPYDVRHPVVLPKEHYYTRLLLLEIHEQNLHAGVKLMIATLNQRFWIVG
FT                 CQAVVRAFVDKCVICCRMKGKVAGQLMGSIPAVRTMPARPFLHCGVDYAGP
FT                 LMIRTSNLRTAKSTKGYVAIFVCLSTKAIHLEAVTDLSTSAFLAALKRFIS
FT                 RRGLCAELWSDHGSNFVGADKEIRKHLRSDEFNEAVSRYLTNMRIKWTFIT
FT                 PSAPHMGGIWEAAVKSMKKHLRVVLGNTTFTFEDLSTVLAQIEACLNSRPL
FT                 CPISTSVESCDTLTPGHFIIGQPLNALPESNISHLQENRLDRWQRLSQYVN
FT                 EIWSRWSSEYLATLQPRNKWQVLQQNLIPGQLVVIKNENLPPMSWELARIT
FT                 QTHPDQYGIVRTVTVRRGQTEYQRPVHKLVPLPCD"
XX
SQ   Sequence 5438 BP; 1536 A; 1251 C; 1264 G; 1387 T; 0 other;
     ttggaccttc ggaagccgga taattcgcga gccgctatgg atgcgcttcg aaaacgccgc        60
     gatgtgctgt ttgagaggat gaagtgggag cataagaact caagttcggt gaaaaatcgc       120
     agtcctccga ttggtgaaat acaggagcga ttgaacaaac ttacggatat gtgtgataat       180
     ttcgataagg tgcagagtga attagaagaa accaccgatg ctcttgttga aatttcttct       240
     atcttcaatt atcgtttgga attcgagaag ctttattatg aaacgaaggc gatctacgtg       300
     gaaatcctgg atgaagccaa tccacgagga agcagcgaag gaacattcct tgaaacacca       360
     ggtgctccag tcaacatcga ggatgcaatc aagttacttc tcgaatcaca aagattactg       420
     atgacgtcac aggcagcagc atcgaacact gtttcgcaat tagctgggcg tgtgaattcg       480
     atgaatgtca gcggatcaac tgctgaaggt tccgacacct cgattgatat ccgtctacct       540
     accatcacgt tgccgatctt caacggtgat aggaagcaat ggaattctct caaggacttg       600
     tttgagagct gtatccactc aaaaaaactg aaagattcgg tgaagctgca gtatctgctg       660
     tcgcatttgg aaggtgaagc taaaagaatg gttagctcct ttacgataac cgacgcaaac       720
     tacgccgaag tttggggcaa gctgaacgag ttctacaata aaaaaaaagt acaccgtctc       780
     agcattagtt aaggaatttg ttgatcagcc gtcagtatca actgcaaccc ttcacggatt       840
     gagaacgctc tgggccactt ccgacgaggt ggtgagacag ctaaaagccc ttggaccgga       900
     gtatggaacg cgcgacccct ggctgttaca cttactgctc gataaactgg atcgcgaaac       960
     tcgtacgatg tgggcccaaa agatagtaga tgaagaaaat ccaacgttcg atgatttttt      1020
     gaagttcctt gaacagcgat gtgatgctct ggagacgtgt gcatccttct ccaaacgaac      1080
     ggacgcagct gtgaaaacag aacgaaaatc ggattcgaag acgaagccag tcttgtcaag      1140
     cagagctgtt catggcttca gaacaagcac tcatcaaata tgcccacatt gctccgcggg      1200
     tcacacgatc tatcagtgta ccggctttcg ggaaattcca gtgattgaac gacgctacat      1260
     agcacgtaat gctaggcttt gtttcaactg cctgaaaacg acacactcag caaaaaattg      1320
     tacctcctca acgatgtgca aacattgcca gcaacggcat cactctttgt tgtgcattga      1380
     aagtgtcagt tcaacttcaa ctcctagcca gccccatcga caagtagttg tttcgacgca      1440
     aaccgaatca tcaacaaagg agccggtgac cgaagaagtg gcatcgtatg tcacagaagt      1500
     gaagaccagc tgtacaacaa acttcatcag tatgttgctt acggctgccg tcaaaattat      1560
     ggggaagaac aacgtcttcc acgacgtgcg ggcaatcgtg gattccgcat gcatgaacac      1620
     actcatcacc aaacaagcat ttgatcgcct tggtctacaa cgtcggaatg ctaacattct      1680
     tgttagtgga ataagtgaca gcaaacctag aaaagcaaga ggatcggtga ctctacaaat      1740
     atcatcgcga ttcgacgatc aaactgtcat cgtggtggaa gcgcttatta tggacagctt      1800
     agttccaaat cagccgtgcg aagcattcga tatcgattca agtattttcg aggatgtgcc      1860
     actcgcggac cctgatttca acaaatgcgg taaaattgat ttactgttgg gaatcgaagt      1920
     tttcttttca attttagaac ctggaaaact actgggtcca cgaggtgctc caatcgcaca      1980
     gaactcaatc tttggcttcc tggtaggcgg ccgtttcgac tcgacctcat gtgtacttga      2040
     caatcatacg ttggttggtc tgagtcacac cgaagatatg aacttggatc aagccttgag      2100
     acgattttgg gaagttgagg agatccccaa aacaaaacag ctaaccgagg acgaacagcg      2160
     tgcagtcgat atttaccact ctacattgtc tcgaaacaaa tcggggcgat acgtggtaag      2220
     ccttccattt gacaacacca agcctgcgct aggagactcg acaaatactg cgattcgacg      2280
     gttcaaagcc cttgagcgaa agtttagtat tgatccggaa ttcagacagc tgtatgccaa      2340
     ttttatgtcc gaatatctgg cccttggaca tatggaaagg attccaccga cagaagtagc      2400
     gatttcgccc gagaaatgct tctacctacc gcacaacgca gtgtggaaag atgtcagtac      2460
     gacaacaaag tttcgtgtcg tatttgacgc ttcgtccaag actgcttccg gaatttcgtt      2520
     aaacgatcgt ttgctcgttg gaccaaacat taacgaacca ttgtttaatg tgtttgcacg      2580
     atggcgcacg tataagattg ccttttgtgc tgacgtccaa aaaatgtata ggcaagtcct      2640
     catatctcga gaagatgcag attttcaacg cattgtgttt cgtgaagatc cagatcagcc      2700
     tctagatcat taccgcttgc ttaccgttac atacggtata gcgagtgcag cgtatcaggc      2760
     cgtggcaaca ctacatcaga tcgctgcaga caatcaagag ctacacccgc tagcagccag      2820
     tcgaattccc aaaaactttt acgttgatga tctgctttcg ggagccgata ccgttgagga      2880
     agcagaattt ctgcgagatg agcttattga ggtacttggt tctggtggat tcgctttgcg      2940
     taaatggtca acaaatgaag cacagattct tgattcggaa acatcccatg atgaaattgt      3000
     ttctgttgag ttgccaaatg aaggagattc catcaaggcc ctaggaatac ggtggattcc      3060
     ctctgacgac atgttttact tcaaggtcac atttgacatc cacagtccaa acaccaaacg      3120
     acaattgctg tccgactcat ctaaactttt cgatccattt ggatggattg ctccagtggt      3180
     ggtcaaaacg aaaatacttt tccagtattt gtggctttac gatcttggtt gggatgatcc      3240
     gttgcccgcg acgattcgtg acgaatggat tgagttaaag gagaccctat accgcattga      3300
     aagaattagg atccagagat ggattccaca ttctatggga agactgcagt tgcacggttt      3360
     cgcagatgcc tccgaggctg catatgctgc cgttgtttat gcacgctctg tggatcaaga      3420
     tggtcgcatc catacgaatc tcgttgccgc aaaaactaaa gtagcgccaa ttcagcaagt      3480
     gtctttgcca cgccttgaat tgatggctgc ggagttactc tctgatttga tgataaaatt      3540
     gatggaatct ttttctcacc tggatgttga actgtatgct tggagtgact cttccattgt      3600
     gctgcagtgg ttagccactc acccgcgcaa atggaaaact tttgtggcaa atcgtacttc      3660
     taaaattttg gaacatctac caacaaagca ctggaatcat gtgtctacca aagacaatcc      3720
     tgcggattgt gcatcaagag gcctaactcc aacagaatta gtcttgcacc cgctctggtg      3780
     gagaggtccc ggctggctcc aggaggctga atcaagctgg ccactatcaa aacgaccgca      3840
     aatagaagat gatgatattt tggaagcgcg agaaacgata acttgcttga atacaacgtc      3900
     atgcgcacac cacgactatt ctgcagaaaa tactctgcta cgtcgctccc ccagcctatc      3960
     tcgcgctcgg cgtagtatct gctgggtgaa ccgttttgtc aataacatgt tggcaatcat      4020
     cagagggcat gccagaaaat gtggtgtctt aactccaagc gaaatagagg atggatgtct      4080
     acaattggcc agagcagctc aatacgactg cttcaaagca gaactagaat ctctccaaaa      4140
     gcaaaaagta ctatcaaaca gcagcaaact gaagacacta tatccgttcc ttgactccag      4200
     tggcactttg cgggtcggtg gtagactgca gaattccgat caaccttacg atgtccgcca      4260
     tccggtggtg ttgccgaaag agcattacta cactcgattg cttctcttgg aaatacacga      4320
     gcaaaacttg cacgctgggg taaaactaat gatcgccaca ttgaatcaac gattttggat      4380
     agttggctgt caagcagtgg tgagagcttt cgtggacaag tgcgtgatat gctgtcgcat      4440
     gaaaggtaag gtagcaggtc agttaatggg cagtatacca gcagttcgaa caatgccagc      4500
     tcgaccgttt cttcactgtg gtgtcgacta cgcagggccg ctcatgattc gcacttccaa      4560
     tttacgtaca gcgaaaagta ctaagggtta cgtagctatt ttcgtttgcc tttcgactaa      4620
     agcgatccat ctcgaagcgg ttacggattt atctacaagc gcttttctag ccgccctaaa      4680
     gcgctttatc agtcggcgag gactatgcgc tgagttgtgg tctgatcacg gctctaactt      4740
     tgtcggtgcc gataaggaaa ttcgaaaaca tctacgatcg gatgagttta acgaagccgt      4800
     tagtcgatat ctcactaaca tgcgaattaa atggacattc atcacgcctt ctgcccccca      4860
     catgggcgga atttgggagg cggccgttaa aagtatgaag aaacatcttc gtgtggttct      4920
     tgggaatact acatttactt tcgaggatct atcaactgtc cttgcacaaa ttgaggcttg      4980
     tttaaactca cgtcctttat gtccaatttc aacatcagta gagtcctgcg atactcttac      5040
     gccagggcat tttatcattg gacaaccgct caatgccctg cctgaatcaa atatcagtca      5100
     ccttcaggag aatcgcctcg ataggtggca acgactctct caatacgtca atgaaatctg      5160
     gtcccgttgg agcagcgaat atcttgccac cctacaacct cgcaataaat ggcaagtatt      5220
     gcaacaaaac ctgattcctg gacaactagt tgtcatcaaa aatgagaacc tgccaccaat      5280
     gtcatgggag cttgctagaa ttacccaaac gcatccagat caatatggca tagttcgtac      5340
     tgtaacggtg cgtcgaggac aaactgagta tcagcgaccg gtacataaac ttgtaccgct      5400
     accttgtgat tgagccagct gtctcaaggg ggggatgg                              5438
//
ID   BEL-831_AA-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-831_AA-I;
KW   BEL-831_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-288
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-288
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2043-2043 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 288 BP; 85 A; 69 C; 49 G; 85 T; 0 other;
     tgttcgtgtt cacttcccaa ctcagtgatg gtcgacgtgc gagtaccata cgacacccct        60
     gctgttggtg atggatccac tcatcgttaa cgcaaccaag agaaaaaaaa atacaaaaaa       120
     agtcattctt gaactacttc tgacttgaag agcacatgta aaattttcac ttttaaaata       180
     acaataatac agtccatttc cagttgtagt acgacgcgtt ttattccaca aatatccgtc       240
     tgctccgcgt cattcgtgta ctctcattag tcgtcgttcg tcgtaaca                    288
//
ID   BEL-832_AA-I repbase;    DNA;    INV; 5504 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-832_;
KW   BEL-832_AA-I; BEL-832_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5504
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5504
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (06-DEC-2018).
XX
CC   A rebuilted sampled sequence. Flanking LTRs are 99% similar to
CC   each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..4820
FT                 /product="BEL-832_AA-I_1p"
FT                 /translation="MDKLLRERKALDARIERVKQNVYSLSKKEGIDEIDIQ
FT                 AELDNLLEMWASYLSVHKRMVDSCSDEQMDEILDHQCGFEKTFIALKTALM
FT                 KLQKKVDFSSTRHDDVAAQDGANALQQLAQQQAEFIRLISSSFNMAASSSG
FT                 SNSSTLHPNSTLPHTDVKLPRMNIPSFGGNILEWPSFFDLFESAVHRNLTL
FT                 QDSQRLYFLKTNLVGEAAALISHLRIEDANYAPALAKLKARYNKPLEIASQ
FT                 HIHRFLNQPSMTTPLATGLRTLHDTSDEVIRALEAMNQVGRDIWLLYILTE
FT                 KLDPESKQLWYQKKSELREEEITLEKFLNFVDAQSCALKSVQSVRPRKPMF
FT                 VPSPTHKTFVNRNPTSLVVAGRQSPPPPCDFCAKSPHQLYHCGKFLHASSD
FT                 DQLRYIRRRGLCENCLRQHSGEPCQSGKCRKCNLLHHTRLHEAFQSPASPI
FT                 SDNNTTTPQTLISSLSLSTDLMDTNVLLLTATINVLDKFGRPHVCRAVLDC
FT                 ASHTSYVTKELCNTLGLATAEVDFEFGGIAGSAGHANRGALVSIASRCSDY
FT                 RAEIPCIILDRLTSDLPLKPIDITDWPIPESIQLADPQFHHPGKISILLGN
FT                 KLFFHLMEPGTIKLGVDDNYPVLKNTKLGWVVSGGYKELQGQPNTSEATCL
FT                 LVSSNENLSEQLRKFWEIEEYTNTNPYFSDEEMRCEEHFAKHTTRDCSGRF
FT                 IVQLPFSESPASLGRSREIAEKRMHHLERKLERYPNLRDQYHSFLKEYIDL
FT                 NHMTLATTKAPDECVFLPHHCVVKETSTTTKCRVVFDASAKTNNGKSLNDI
FT                 LMTGPVLQDSLVNISLRFRFPSVVLAGDVKQMYRMVLLCDHHRDICRILWR
FT                 WSRDEPMLEYCLNTVTYGTKSASYLATKCVQQLLLAHEKQFPTTVARAIKG
FT                 TYVDDVLTGADSIGEAKQLCQELRHIFAAGGFHLRKWASNNVEALEGIPEE
FT                 DREMKQPIDLNEPNTIKALGIHWKPCSDVFLFSVQPPQILQPTKRIILSNI
FT                 ASLYDPLGLIAPIIINAKLLMQRLWELKVDWDTTPPGELINIWQNFVQSLA
FT                 LLNLFQIPRRVIGTTRTSQIYLHGFSDASERAMGACVYVRTIDDVGNLNSH
FT                 LLCAKSKVAPIGNKRATLPRLELCAAVILARLIDSVVKAVEQPFVEIRAWV
FT                 DSKVVLAWLNGGASRWKTFVANRVAEISTHLPAINWSHIESERNPADLISR
FT                 GVSAEQIQHNTLWWNGPSWTPFADRSDSTAIHQLTSTDNQQICREQRVLAV
FT                 SLITTYENQFLDEMMNRYYPDLTTLLRVTARALRFRSPEFRSSSRLSPAEI
FT                 DRAQAVYIRHVQQQHFREELERLRQQRGINPSSTLHQLKPFLDDAGMLRVG
FT                 GRLQQSSFSYDVRHPVLLPRSSILTSYILNYDHITHHHCGPQTLLAVSRRR
FT                 FWIIRGSSATKKIYRQCVVCARAKPVPLYQQMGQLPSDWVHPNPAFAITGI
FT                 DYAGPVQIVGRRTRGAKSSKLAICYLCAFPLRLYTWKLYQTLLLLRFWLRL
FT                 RDFIVGMDYRLRCIQIMQLPLEQHLNTFKKCSTW"
XX
SQ   Sequence 5504 BP; 1480 A; 1320 C; 1250 G; 1454 T; 0 other;
     ttaaatggtc ctacgaaccg gattgggcag tcggtgaatt taagtgcgtt ttatccgctt        60
     cgtctcgccg tgccacgatt tgcgattgtg agtgcaagag tgaggttgca atatcacctc       120
     cgaaagaaca ctgggattag gacgtgttat tgtgaagagc agttctcacc atggataagc       180
     tgcttcgtga aagaaaggct ctcgatgcac gtattgagcg agtgaagcaa aatgtgtata       240
     gtttgtctaa gaaagaagga attgatgaaa ttgacattca ggccgagttg gataatctcc       300
     tagaaatgtg ggcgtcatat ctttcggtcc acaagcggat ggtagacagt tgttctgatg       360
     aacaaatgga tgaaatactg gatcatcaat gcggattcga gaaaactttc atcgcgttga       420
     agaccgcact tatgaagcta caaaaaaaag tcgatttttc atcaactcgt catgacgatg       480
     tagcagcaca agatggcgcc aatgcccttc aacaattggc acagcagcag gctgagttca       540
     tccgtttaat ttcgagtagt ttcaacatgg ctgccagtag cagtgggagt aatagttcca       600
     cacttcatcc gaacagtaca cttccccaca ctgacgtcaa gcttcctcga atgaacattc       660
     caagttttgg cggcaacata ctcgagtggc cttcgttctt cgatttgttc gaaagcgcag       720
     ttcatcgaaa cttgactctg caggacagtc agagacttta tttcctgaag accaaccttg       780
     ttggcgaggc agccgcgcta atctcgcacc ttcggattga agatgccaac tatgctccag       840
     ctctggctaa gttgaaggcc agatacaaca aaccattgga gattgcttca caacatattc       900
     atcgcttctt aaaccaacct tcgatgacga ctccattagc gacaggtttg cgaacactac       960
     acgatacgtc tgatgaagta atccgagctt tggaagccat gaaccaggtg ggacgcgaca      1020
     tatggctttt gtacatcttg actgaaaaac tggaccctga aagtaagcag ttatggtacc      1080
     agaaaaaatc ggagctgagg gaggaggaaa ttacgttgga gaaatttctg aacttcgtcg      1140
     acgctcaaag ttgtgccctt aaatctgtcc agtcggttcg accaagaaaa ccaatgtttg      1200
     tcccgtcgcc cacacacaaa acgtttgtta acagaaatcc aacatccttg gtagtcgcag      1260
     gaagacaatc tcctcctccc ccttgtgatt tttgcgccaa gtcaccacat cagctgtatc      1320
     attgcggtaa gtttctccac gctagctcgg atgatcagct tcgatacatt cgtagacgtg      1380
     gtctctgtga aaactgcctt cggcaacact ccggtgaacc atgtcagtcc ggaaaatgtc      1440
     gcaagtgcaa tctccttcat cacacccgtc ttcatgaagc cttccaatct ccagcttcgc      1500
     ccatatccga caacaacacc acgacgccac agacgctcat atcatcgctt agtttgtcaa      1560
     ccgatctcat ggacaccaac gtacttctgt tgactgccac catcaacgtg ttagacaaat      1620
     ttggccgacc tcacgtttgt cgggctgtgc tggattgcgc ctcacacact agttatgtca      1680
     cgaaggaatt gtgtaacacc ctaggcctag ctaccgccga agttgacttt gagtttggtg      1740
     gaatcgctgg ttctgctggg catgcgaatc gtggggcatt ggtttcgatt gcgtcgcgtt      1800
     gttcggatta ccgtgctgaa ataccctgta tcatattgga tcgacttact tctgaccttc      1860
     ccctcaagcc gatcgacatc acagattggc ccattccgga atcgattcaa ttggctgatc      1920
     cccaatttca ccatcctgga aaaatcagca ttctcctcgg taacaaactc ttttttcatc      1980
     ttatggagcc cggtactatt aaactgggag tggatgacaa ttatcctgta ctcaaaaata      2040
     cgaaacttgg ctgggtagtt tctggcgggt ataaggagct ccaaggtcaa ccgaacacta      2100
     gcgaagcaac ttgcctacta gtttcttcaa atgaaaattt gtcagagcaa ttgcgaaaat      2160
     tttgggaaat tgaagagtac accaatacaa atccatactt cagcgacgag gagatgcgat      2220
     gcgaagagca ctttgcgaaa cacacaactc gtgattgctc ggggcggttt attgtccaac      2280
     ttccattctc ggagagccct gcatctctcg gtagatcaag ggaaattgct gagaagagaa      2340
     tgcaccatct tgagcgaaag ctggaacgat atcctaattt gagagaccaa tatcattctt      2400
     ttttgaaaga gtacattgac ctcaatcata tgactctcgc cacaactaag gctccagatg      2460
     aatgtgtatt cctcccacat cattgcgttg taaaggaaac aagtacaacg acaaaatgta      2520
     gagtcgtctt tgacgcatct gcaaaaacaa acaatggaaa atcgttgaat gatattctta      2580
     tgactggtcc tgtcctccaa gactctttgg tgaacatttc attgaggttc cggtttcctt      2640
     cagttgtgct tgcgggtgac gttaagcaaa tgtaccgtat ggtgctcctt tgcgatcatc      2700
     atcgtgatat ttgcagaata ttatggcgct ggtcaaggga tgaaccaatg ctagaatatt      2760
     gcctcaatac cgtaacgtac ggaacaaaaa gtgcttcata cttggccaca aaatgtgttc      2820
     aacagctgct attggcacac gagaagcaat tccctacaac tgtagcaaga gccatcaaag      2880
     gcacctatgt cgacgatgtt ttaactggtg ctgactccat tggtgaggct aaacagcttt      2940
     gtcaagagct tcgccacatc ttcgctgcgg gaggttttca cctgaggaaa tgggcgtcaa      3000
     ataatgtaga agctctcgaa gggatcccag aggaagatcg tgaaatgaag cagcccatcg      3060
     acctcaacga accaaacacc ataaaggccc tcggtatcca ctggaagccg tgcagcgacg      3120
     tattcctgtt cagcgtgcaa ccacctcaga tccttcagcc cacaaaacgc atcatattgt      3180
     ccaatattgc tagcttatat gatcctcttg gacttattgc accgatcatt atcaacgcca      3240
     agctactgat gcagcgtttg tgggagctga aggtggactg ggatactact ccccccggtg      3300
     agttaattaa tatctggcaa aattttgtgc aaagtctggc cctgcttaat ttatttcaga      3360
     tcccgagacg cgttattggc accaccagga cgtcacaaat ttacctgcac ggcttcagtg      3420
     atgcatccga gcgggccatg ggcgcatgtg tgtacgtcag aacgatcgac gatgttggaa      3480
     atctaaactc ccacctccta tgtgcaaagt ccaaagtagc gccaattgga aataaacgtg      3540
     cgacattgcc acgtttggag ctctgtgcgg ctgtcattct tgcacggcta atcgacagtg      3600
     tagtaaaggc cgtggagcaa ccatttgtcg agatacgagc atgggtcgac tctaaagtgg      3660
     tgcttgcttg gctcaacgga ggtgcatcac gatggaagac gtttgttgcc aatcgggtgg      3720
     ctgaaatttc aacgcatcta cctgcaatta actggagcca tattgagtcg gaacgtaatc      3780
     cggctgatct aatttcgcgc ggagtttcag cagagcagat tcaacacaat actttgtggt      3840
     ggaatggccc ctcatggacc ccctttgctg atcgtagtga ctcaactgcc atccatcaac      3900
     tgaccagcac tgataatcaa cagatatgta gagagcagag agttctggcg gtctctctta      3960
     tcaccaccta tgaaaatcaa tttctcgatg agatgatgaa tcgatattat cccgatctca      4020
     caacacttct tcgggttacc gctcgtgctc ttcgatttcg ctctcctgag ttccgatcgt      4080
     cttctcgttt atcaccagca gaaattgatc gagctcaagc agtttatatt cgacacgtac      4140
     agcagcagca ctttcgcgag gagctcgagc ggctacgaca gcaaaggggc ataaatccaa      4200
     gcagtacact tcaccaattg aagccatttc tggatgacgc gggaatgctt agggtgggcg      4260
     gcaggttgca gcagtcaagt tttagctatg atgttcgaca tccagttttg ttaccacgaa      4320
     gctcaatcct cacatcgtac atattgaact acgatcacat cactcatcac cattgcggac      4380
     ctcaaaccct gttggccgta tcacgaagac gtttctggat tattcgtggt tccagtgcta      4440
     caaaaaaaat ctaccgtcaa tgcgtagttt gtgcacgtgc taagcctgta ccgttatacc      4500
     agcaaatggg tcagcttcca tcggattggg tccatccaaa tccagccttc gctattacag      4560
     gaatcgacta tgctggtcct gtgcagatcg tcggtcgcag gacaagagga gctaaatcca      4620
     gcaaattagc tatttgctat ttgtgtgctt ttccactaag gctgtacaca tggaagctgt      4680
     atcagacctt actactactt cgtttttggc tgcgtttacg cgattttata gtcggtatgg      4740
     actaccggct aaggtgtatt cagataatgc aactaccttt agagcagcat ctaaacactt      4800
     tcaagaaatg ttcgacttgg taaactcatc ggtgcacaac gatcgtgtta ctgatttcct      4860
     gactgacaag ggtgtggaat ggagctttat tccagctcga tcccctcacc atggtggcct      4920
     gtgggagtcc gcaattaagg ttgcgaagca gcacttatcg aaattaacga gcaactacat      4980
     ctttaccttt gaggaattgt ccacactcat ttcccaaatt gccgccacta tgaattcaag      5040
     accgcttact ccgatctcaa acagtccagt tgatgcgcag ccactcactc ctgcgcattt      5100
     catcattgga cgggctctca cgtgcgttcc ggaggttaat ctgttggaac gccaaatatc      5160
     gtgtctctca cgctggaaat ttatccaacg cctttcgcag gagttccgag ttagatggca      5220
     aacggagtac gtacgatctt tgcagcgaat gaccaaatgg caacgttcgt cgcacaatgt      5280
     atcaatcggc gaatttgtgt tgctggttga tgacaactca aagccaaaga ttattgaagt      5340
     ttttcccgga tccgatggac taactcgagt ggttcttatt aagactggca ctagcactac      5400
     tcgtcgagat gtccgaaagg taagagtcat tccattggat tcagacgagt acttacctag      5460
     aagaatcaag tgaaattcct ggacggattt tggtgggcgg ctta                       5504
//
ID   BEL-832_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   06-DEC-2018 (Rel. 25.07, Created)
DT   06-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-832_AA-I;
KW   BEL-832_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2133-2133 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 241 BP; 62 A; 66 C; 36 G; 77 T; 0 other;
     tgttagcgca aatcgtcgag cccctctaat gcagaatcca ggcttatagc agtttcaaag        60
     cattaccgca atgttcattt ctaaactcct atactatcat gactctctct ctaattgtat       120
     tgaatttgcc taataaaaca gttgaattgt agcactcaag taatctacac gcattttcta       180
     tacctccgtc acaacacctt cccgggcgcg tcgcgtttct tttcgggctc ttatcactcc       240
     a                                                                       241
//
ID   BEL-833_AA-I repbase;    DNA;    INV; 5981 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-833_;
KW   BEL-833_AA-I; BEL-833_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5981
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5981
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2120-2120 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 5981 BP; 1626 A; 1672 C; 1242 G; 1438 T; 3 other;
     tattggtgcc gtgaccagga taccggtttc cctttcgcca ttgtgtccgt gatccgagtg        60
     acgccaaccg ccatagtgaa aagccgtcgc tattgatatt ccgccatcct aattgatcga       120
     ttacccgcca tccctccgaa gaagattcca gagtgttcca gaatattaat tcaaggcctg       180
     tttgaaccag gcacacggta cgtgtgattc caccttgcgc agaaattgtc cgcgggtgcc       240
     ttgagatatt tttccgattt tcttttcacg ttaccacccg ttcatcgaga agttccgcta       300
     gtgcttagca gtcccgttgc ccgtttccgc cctcgaaagt gctaacgagt gccattagaa       360
     cattcccgaa agtttccgtc gccattcccg ctcatctggc caccccagca tcgtttgaag       420
     cccgacagta tccggcggca ttttataaaa atacaaggct taatcctagc cgtgaaaagg       480
     ttagtagtat tccataaacc cctacgccat ttgtccggct ctaccgggtc tttctttgtg       540
     tgccttccca tctagaaccg ccattttacc acgccgtgtt ccgatcgccc caccatggag       600
     gaacagcgca aactccagct taccaaccgc cgtacaaccc tcatggcttc gctagggaga       660
     gctgagcagt ttgtatcccg ataccaaccc gaacgtgacc aagcccaagt gccgctacgc       720
     atcgagaata tcgaccacgt gtggatggga ctggaagaag ttcagaccga acttgaagaa       780
     gtggagacca ccgaagaagg tagggaacag aacctccaaa tccgttccaa atttgagtcc       840
     gtttatttta aagtaaaggc tgctctaaaa tccctcttac ccgccaatgt aaccccaact       900
     caaagcgcaa tccctaatcc tcccgccaat ctgctctctg gcatcaagct tcccaccatt       960
     tcgttgccag aattcgatgg cgactataat caatggttga cctttcatga cacctttgtt      1020
     gccctcatcc actccaacgc ggatgtcccc gacgtgcaaa aatttcatta tcttcgcgcc      1080
     gccttgaaag gtgaagcggc tcagctgatt gaatcgattg ccattagtgc tgccaattat      1140
     tccgtcgcct ggcaaacgct gacgacacgc tacgcaaacg actacttgct taagaagcgt      1200
     catttgcaag cccttctaga ttgccctcgc atgaaaagag aatccgccga agctttgcat      1260
     agtctggttg atgaatacca gcgccatacg aaaattctcc gtcaactgaa tgagcccgtt      1320
     gatcagtgga gtacgatact tgagcatctg ctttgcattc gccttgacga tggaaccctt      1380
     aaggcatggg aagatcacgc cactaccgtc gctgatccga atttcaactg cctcgtagat      1440
     tttctacaac gtaggatccg tgtccttgaa tcgatgtccg tcaatcacca atcgcacaat      1500
     tcgcaaacgc ccgtttatca aaccctctcc aatcgaaagc cattgtttca caaagttgcc      1560
     acctacaccg tcgcagagga acagcagccc aaatgctacg cctgcaatca gtaccatttt      1620
     ctcataaaat gcccccgctt tgagaagatg accgtttctg accgtatgag attagtcgat      1680
     gccaatcgtc tatgccaaaa ttgtttccgc cacgatcact ttgctcgaaa ttgccaatcc      1740
     aaatattcct gccgacactg ccaaagaaga catcacacgt tgctacacac tgttaatagc      1800
     ttcaatgaat cccctcatca atcatctgca tcgcgtttct ccaatcaagc cattcattca      1860
     cccaagccgt cgaatcgcaa caacaatgct ccatccacta cctacacatg cgcgagcaac      1920
     acctcgcaag caaacaatcc cgcacctgca tccaattcga acgttttgct ttctaccgtc      1980
     gttctattga tcgttgattc aaacggtcaa gctcaccccg cacgagcatt gttagatagc      2040
     ggatcacaat cgaatataat gagcgagcga ttgtgccagc tattgaaatt gaaacgacga      2100
     gtcgtaaaca tccccgtcca cggtgttgga gaatctgctt ctaatgtgaa gcacagcgtc      2160
     cattccctca ttcgatctcg taaaagcaat ttcgaaatcg atcttgactt tttagtcctt      2220
     ccccgagtaa cgatggacct gcctgcagtg acattccccg ctagcaactg gcgtatccca      2280
     gatgatttgt tcctagccga tccaaatttc aataaaactg gaactatcga tttgcttctc      2340
     ggtgcagagc atttttatgc cttcattaac cctggtacca aaatcgagca ggaccagcag      2400
     catatgctag tcgaaagtgt ctttggctgg atcgttgtgg gaaaaaccaa atttcagccg      2460
     ttccccaagc catcgcatgt cacgtttcca tatcagatcc cctccatgac gcagttgaac      2520
     gtttctggaa agtggaagaa attagtaacg caaccaacta ttccatcgaa gagcaacaat      2580
     gtgaagctca tttcgtcgaa aatgttaccc gcacccccga aggccgttat atggttcgtc      2640
     taccccgtca ccctgatttc gatcatcttc ttggtgacac aaaagcagtt gccatgcgcc      2700
     agtatctttc ccttgaaaag cgattggatc gagacccaca tttgcaacag gagtaccaga      2760
     atttcctctc tgagtaccaa tccttgggac acctacgtat tgttccaccc agtgaacccg      2820
     agcctacaca gacttcctat attcctcacc acccagttgt gaaggaatca agtaccacca      2880
     caaaggtacg agtggtattc aacggatcgg tacgttccac tactggattc tccctgaatg      2940
     acgccctaca agttggaccg gtagtacaag acgagttgct caccctagtt cttcgattcc      3000
     gcaagtaccc gatcgcactc gttgccgaca ttgaaaaaat gtatcggcag gtactggtgg      3060
     acccaagaga cacccctctt caaagaattt tctggcgatt tcaacccaat ggccccatcg      3120
     aaacgtgcga actaatgact gtgacgtatg gcttggcctc atcatcattc ctggccaccc      3180
     gtaccctcaa gcaattgtac caagacgaag gagaaaatta cccactagga ggtccagctc      3240
     tagttaaaag tttttacgtt gatgattaca taggaggtgc ccaatctgtc aacgaagcca      3300
     tccaaacaag agaggaattg gacgaattgc ttaccaaagg tggattcaag ctgcgaaaat      3360
     ggtcatcgaa cgatccacgc gtactagctg atctcgatcc gtctcaagtt gaaacccaat      3420
     cgttcctaaa actcgatacc gaaaaaccta tgaaagccct tggtgtaggt tgggaaccac      3480
     tgaccgataa actgcgcttt gatatcactc ctatcgaaat taatggcccg ccaactaagc      3540
     gatcgatttt atccggcatt tcaaagcatt tcgatcctct cggcatcact gctccagtcg      3600
     ttattcgtgc caaaatgctt ctacaagaac tgtggttgca gccctgcggt tgggatgacg      3660
     aagtttctga caccatcaac gagaagtggc agtcctattg ttccgacttg gtcaaacttt      3720
     ccacctacac ggttcgtcga tatgcttttc ttccaaattc ggctgtcgaa atccacacgt      3780
     ttgccgacgc ttccgaacaa gcatatggag cttgtagcta cgctagatgc accgattcca      3840
     atggccaaat ccacgttcag ttgattgcag ctaaatcgag agtcgctcca ctcaagcgcc      3900
     tatcgattcc ccgcctggaa ctatcggccg ccgtacttgc tgcccgatta cacgcaaaaa      3960
     taattgaagc actcgacatg cccatcaaat catcccactt ttggtcagac tcgtcggtca      4020
     cgctcgaatg gttgcgttcc cctccacacg tttggaaaac attcatcgcc aatcgggtat      4080
     cagaaatcca aactaccacc caaggatcgc aatggaacca cgtcgcagga acccataatc      4140
     cagctgacct gctaacgaga ggaatgaagg tgaatgagtt tctgagcagt gatctgtggc      4200
     attacggtcc atcctggctg agtctgcaag aagaaaagtg gccaatatca tccaaagcga      4260
     acaacctgtc cgacgaaatc cttgagaggc gagtcacggt ggcggctgtc caaaccaggc      4320
     cgactgtgaa tgaaattttc cagcgaacat catcctacac acgactgctt cgagtaactg      4380
     cctattgtct acgattcatc aacgcatgcc ggcgacaaag gtcatctgat caaccagaag      4440
     gaggcataac actcaccgtg gaggaattgg cacaatctcg tctgaaactt gtgaagctag      4500
     cccaaaacga ttcatttgct gaggaaatta gggatttgaa tagagggaag ccagtctcta      4560
     aacgatctaa tctgcgcttg ttgagtccat ttcttgattc agagggaatt attcgagttg      4620
     gcggtagact aaacctatca gagcagcctt accacaccaa gcacccaatc ctactcccca      4680
     gttcccatcc tttcacacgt tctgttgcca ccgattatca cctcaaacta ttgcacggtg      4740
     gcggccgtgt cacgttggca acgatgcggc aagaatactg gccgattcat gggcgacgat      4800
     taatgaatgg catcatgcgc cgctgtttcc gatgcacacg cgcatctcct acaccatcaa      4860
     cacaacaaac gggtcaacta ccacagcgaa gaataacacc aagcagacca ttcaccgtca      4920
     ctggcgtcga ctacgctggt ccactgtacc taaagccacc acacaaacgg gcagccacga      4980
     tcaaggcata catcagcata tttgtttgct ttgcgacgaa agcagttcac atcgaactag      5040
     tcagcaatct ttccaccgct gctttcattg ccgctcttcg tcgatttgta tctcgtcgtg      5100
     gtcggccagt gcacatgtac tccgacaatg gcaagaattt tgaaggcgca cggaatgaac      5160
     ttcaacagct acaccaaatg ttgcacagcg agcaatcttc aggagatatt gccaccatct      5220
     gcgcgaccga gggaatccag tggcatatga taccaccaaa agcccctcac ttcggagggc      5280
     tatgggaggc agctgttaaa acggcgaaga agcatctcta cagacaactc ggcaacatca      5340
     ccctatccta cgaggacatg acgactatcc tgacacaaat tgaggcctgc atgaactcga      5400
     ggcctctcac accgatgacc gaaaccccag acgatttggc gatccttaca ccagcgcatt      5460
     tcctcgtcgg cacttcactc tctgctctgc cagaagctga cgtcacagca gttccactca      5520
     accgactcga ccattaccag aagcttcagg agagggtcca aaagttctgg catctgtggc      5580
     gaacagacta tctgcaggaa ttacagaagg aggccaaacg aacaacacca aacaacgcat      5640
     tccaaccggg aaggatggtt attctggtcg acgaatctct tccacctgta agatggccgc      5700
     tcgcgagaat catcgaagct catcctggga ccgatggatt aattcgcgtc gttacactcc      5760
     gaaccagcaa gggaaacatc cgaagaccta tcaccaaaat ctgcctacta ccwwacgatg      5820
     tttgtgaacc tgaaatcgaa gaagtttgtt aaaatttcaa caaatgttag caaaattatg      5880
     tccaatttcc gcatgcttgc agtccatcaa wgttgtagac aatgaaatat tgtgacatta      5940
     gaaacgtcag aattgaaatt agaaatttca ggtggcggcg a                          5981
//
ID   BEL-833_AA-LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-833_AA-I;
KW   BEL-833_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-452
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-452
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2134-2134 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 452 BP; 134 A; 96 C; 97 G; 125 T; 0 other;
     tgtttgttct cgatcagttc ccaacttcta tagattcgcg ccgaaccccc tgatctagta        60
     ctgcatttga gtgctaggcg atggtatgtg tctttggtag tagtgctaga aaggagtagc       120
     ataaattaaa attcggtagt agtagtagat agctaagttt cctaatatta agatttaagc       180
     aataaattca ttccaaattg agcttccaaa gcataaagta ttccccaatt gtatccaatt       240
     aagtctgaag tgaataaagt aaaattccaa gtgcgaatag tttccattcg actagaagaa       300
     gactcctggc ggaagttagc gacaactccg tgagctttta tggtgaagta gccgatagcg       360
     ccgctcccgc cgagtattgt gactacgcta caggaagtga ccgttttagc caccgttgca       420
     attccaacgg aaaccgcgaa cctgccccaa ca                                     452
//
ID   BEL-834_AA-I repbase;    DNA;    INV; 5969 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-834_;
KW   BEL-834_AA-I; BEL-834_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5969
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5969
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1192..5625
FT                 /product="BEL-834_AA-I_1p"
FT                 /translation="MGGKKIKSMIHVRDGIVDFLHRTERFLQNADDSNGLQ
FT                 IRFRLEKLEVKWNEFEEVQTEIEEAEDREDNMEYHRQVREVFEEKYFQVRA
FT                 GLASKLPLETSQLAQQTSDLAASTGSVANVHTYVRLPQINLPEFDGNFEKW
FT                 LAFHDTFKALIDSSHELSDIQKFHYLRASLRGDALKIVDAFPMSDANYRVA
FT                 WDSLVARFSNAYLLKKRHLNALFEYPKIRKESVVGIHELIDCFERNTKILD
FT                 QLGETTSGWGAMLTHLMVSKLDDGTQKQWEEHVSGTDGRFSELIDFLKRHT
FT                 RVLDALIVDQHISSSNGPSSSNGSKFRPAKLLVNSATDATVLNCVVCSEQH
FT                 FITRCPAFDELPIDRRLQLTNSKRLCSNCLGRNHLARDCPSKFRCKTCSKK
FT                 HHTLLHPGFPGSGSATTPVTETATLAVTYPPFSSGDSVSGSPDTNSIPPIS
FT                 SNVAMGIANSHVFLLTVVLKVKDRWGRTHLARGLLDSGSQANLMTERLCQL
FT                 LKLTRNDKHVEISGIGQARSQIAYEVSTVIGSRIMDFSIPMNFFVMGQVTN
FT                 NHPSSTLPMANWKPPADMQLADPEFFLSGPIDLVMGSQFFYDFHLLDGGRL
FT                 QIRKFDGTVPVFVNTVFGWVAAGESQWENVTSSVNCHLAMAESLDKNIEKF
FT                 WTIEELPEKTPRTQEEDDCETHFQNTFSRDKNGRYIVRYPKKIGFHNMIGD
FT                 SKAIALRRFQQLERRLNRDPDIRKRYDEFMKEYLELKHMKLIGTVEDAEEV
FT                 ARTVCYLPHHPDFKESSSTTKLRVVFDGSAKTSTNFSLNEALLTGPVIQDD
FT                 LLDIVIRFRKHSVALVADVEKMYRQILIHSEDTPLQRILWRFDPSEPIQVY
FT                 ELQTVTYGLSSSSFLATRVLKQLAEDVGNKYEHAAMAIAEDFYMDDFLSGA
FT                 DSIEKAKRLQHDVQAVMSEGGLPLRKWSSNKPAIFEDDNRSTEVPGPTTHH
FT                 LGPGQKIKTLGVAWETGPDQLSIEVQDVKPDEQWTKRKVISAIAQLYDPLG
FT                 LVSPVVAWAKMRMQNLWLSSVGWDDPLSDDICSKWKEFYNQLPLLKSFKVA
FT                 RHVFWNNANDIQFHVFSDASEVGYGACMYARSSSIDGSIKMELISSKSRVA
FT                 PIKRITLPRLELCAALLAAKLYARVSTALRMEGMRCFFWSDSTVTLHWIQA
FT                 LPNTWQCFVGNRTAEIQRLTHGHSWNHVTGADNPADCISRGMLPEEFLLNL
FT                 SWRGGPSWLLKSEKHWPKQPTLETPSDNVLEKRKTVAVIQSSAPKCSLFEQ
FT                 FSSFWKLVRVTAYILRFVDHCRKKRAAKDVFLTVPELTASKRTLVKSAQLE
FT                 TFSNEIKAIKKGHPVSSQSPLKNLRLELDNNGILCVGGRLQLSDEEEHFKR
FT                 PMILPSKHPLTRLIAKHYHELSHHSGPRMTLASIRQEFWPLRGKNLANFVC
FT                 RKCLTCFRHRPAPVSQPIGQLPKARVTPSRPFAVIGVDYCGPIYIKPIHRR
FT                 ENLQYRSILMWAN"
XX
SQ   Sequence 5969 BP; 1729 A; 1324 C; 1303 G; 1613 T; 0 other;
     tttggtgccg tgaccaggat tgcgctccaa ggaagcgacg gcacgttagc tactccattt        60
     tatggttcga ggacaaaagg atatctacat aatacggaat tcaggaacac aattgagctc       120
     gccatttgca tcacaatcaa tcgccacagt cttattggaa aagcccatct ttactcgttc       180
     aatggttcag caagacgcca tagctacgtg atcctggaga aaccagtaga tattgaaaat       240
     gaattgcctg tttgacaggc tcacaaggtg agtacctgtc caacaaattt aatatacgat       300
     ttcatatcta cctggtcgtt tttctctctg tgcattctct acatttcata aactacacac       360
     cactaccatc tggattttgt ggttcgtcat taccgtacaa gaaagactgg ataacggaag       420
     gaaaggcttt cgtccgttgg ataactatct gaaggcattg gctctgctgg tcatcaacgc       480
     agcaacattc aggaccaacg acacgataaa gggaacaata aaggatgaaa tcacacattg       540
     cttattaatt taccgactgc tgagccctgg acctttagcg gaacttgttg gataatttgg       600
     gttgtattcc acctgggaaa acgtttctta ttcaattcaa cgttgtataa ggcctgtcga       660
     ataggctcat cggtgagtac ctgtccgact aaactatcca acgttgcaaa ggtgcttctc       720
     ttggcgctct gcttccagaa aggtgaaaat tattgactcc tcgggctgat ttacaccaag       780
     ggtacttact cgagttaact attcaaggcc tgtcgagcag gctcatcagg tgagttcctg       840
     tccgacaatt aacgttgcca tacaaggggg tgcttcgctc ggtgaatttg attacagata       900
     agcattgacg tcacgggtcg gtcttcttat aaaaaaaaat acatcgctct tggggaaccc       960
     ctttccggtg aagactgctt ggatatacca atattgctct aatatatgct cttggcgaag      1020
     aacatctagt gtgattgata caaggcctgc ttgacaggct caccaggtga gtccctgtcc      1080
     aaactgttct atcatatcgc aaagggtatt ccgctgtgtg cttattacag tgtctgcaca      1140
     cctgcttcaa acggctgcta attttatcga taagtgacta gcacgacgat catgggagga      1200
     aagaagatta aatcgatgat tcacgtccga gatggcatcg tggattttct tcatcgtacg      1260
     gagagattcc tgcaaaacgc cgatgactcg aacggtctac agattcgctt tcgtttagag      1320
     aaactcgagg tgaagtggaa cgaatttgag gaagtccaga cggagattga agaggcagaa      1380
     gaccgtgaag acaacatgga atatcatcgc caggtcagag aagtcttcga agagaaatac      1440
     ttccaggtaa gggcagggct ggctagcaag ttacctcttg aaacatcaca actcgcacaa      1500
     caaacgtctg atttggctgc ttcaacaggc agtgttgcca atgttcacac atatgtgcgt      1560
     cttcctcaaa ttaatctgcc agagtttgat ggaaattttg aaaaatggct tgcttttcat      1620
     gatacattta aggcattgat tgattcgtct cacgaactta gcgatatcca aaaatttcat      1680
     tacttgcgag cttcattacg tggcgatgct ctgaaaatag tcgatgcctt tccaatgagt      1740
     gatgcgaact acagggtggc ttgggatagc ttggttgcac gcttttctaa tgcgtatctg      1800
     ctgaagaaga ggcatttaaa cgctttattc gaatacccaa agatacgaaa ggaatccgtg      1860
     gtcggaatcc acgagctgat cgattgcttc gagcggaata caaaaatttt ggaccagtta      1920
     ggagagacta caagtggatg gggtgcgatg ctaacgcact tgatggtctc gaagcttgat      1980
     gatggtactc aaaaacaatg ggaagagcat gtttctggta cggacggcag gttctctgaa      2040
     ttgatcgatt tcctcaaacg acacacacgt gtcctagatg ctctgatagt ggatcaacat      2100
     atttcatcct cgaatggtcc atcctcatca aacggatcta aatttcgtcc agcaaaactt      2160
     ttggttaact cggcgaccga tgcaacagta ctcaattgtg tcgtttgcag tgagcaacat      2220
     ttcattaccc gttgcccagc atttgacgaa cttcctatcg atagacgatt gcaacttacc      2280
     aattctaagc gattatgcag caactgtttg ggtcgaaacc atttagctcg agattgtccg      2340
     tctaagttcc ggtgcaaaac gtgttctaaa aagcatcata cgttactaca tcccggtttt      2400
     cctggttctg gttccgctac cacccctgta acagagactg ctacattggc cgttacttat      2460
     ccaccctttt cgagcggtga ttcggtaagt ggtagtcccg atacgaattc gattccgcca      2520
     atttcatcaa atgttgctat gggaattgcc aattcacacg tattcttgct cacagtagtg      2580
     ttgaaggtta aggatagatg gggaagaact caccttgcaa ggggactgtt ggattcgggt      2640
     tctcaagcta atttaatgac cgaacgtctc tgtcagttac tgaaactcac acggaacgac      2700
     aaacatgtag aaataagcgg aattggacag gcaaggagcc agatcgctta tgaagtctcg      2760
     acggtaatcg gctcacgcat tatggatttc tcaattccga tgaacttttt tgttatggga      2820
     caagtcacga ataaccatcc atcttccact ttaccgatgg caaattggaa acctcctgcg      2880
     gatatgcaat tagcagaccc cgagtttttt ctctctggcc caattgattt agtcatggga      2940
     tcacaatttt tctacgactt ccaccttctc gacggtggcc ggttacagat tcgcaaattt      3000
     gatggcacag taccagtatt tgtcaataca gtctttggat gggtagctgc aggagaatcg      3060
     caatgggaaa atgtaacatc ttcagtcaat tgtcatttag ccatggcaga atcactagac      3120
     aaaaatatcg aaaaattttg gactatcgaa gaattgccag agaaaacacc cagaacacag      3180
     gaagaagacg attgcgaaac tcactttcaa aacaccttta gtcgagataa aaatggtcgc      3240
     tatatagtac gatatccgaa gaaaattgga ttccataata tgattggcga ttcgaaggct      3300
     atagctttgc gtcgttttca gcaattggag agacgcttaa atcgagaccc tgatattcga      3360
     aagcgttatg atgagttcat gaaagagtat ttagaattaa aacacatgaa actcatagga      3420
     acggttgaag atgctgaaga agttgcacgt acagtctgct atcttccaca tcacccagac      3480
     ttcaaggaat caagttctac gactaagcta cgggtagtat ttgatggatc ggcaaagaca      3540
     tcgacaaatt tttccctcaa tgaagccttg cttactggac cagttattca agatgactta      3600
     ctggacatcg tgatacgatt tcgcaagcat tctgtcgcac tagtggcaga cgtagagaaa      3660
     atgtataggc aaatcctgat tcattctgaa gacacgcctc tacaacggat tctctggcgg      3720
     tttgacccat ctgaacccat ccaggtgtat gaactccaaa ctgtaaccta cggcctctct      3780
     tcatcatcat ttcttgcaac tcgtgttttg aaacagctcg ccgaagacgt tggcaacaaa      3840
     tatgaacatg cggcgatggc gattgcagag gatttctata tggacgattt tctctctggt      3900
     gcagattcta tcgaaaaggc caaaaggtta caacacgatg tccaagccgt gatgtcagaa      3960
     ggtggtttgc ccttgcgtaa atggagctca aataaaccag cgatatttga agatgacaat      4020
     cgatcaacgg aggtgcctgg tccaacaaca catcatcttg gacccggaca gaaaataaaa      4080
     actctaggcg tagcgtggga gacgggacca gaccagttaa gcatcgaggt acaagatgtg      4140
     aaaccagatg agcaatggac caagcgaaag gttatttcag ccatcgccca actctacgat      4200
     cccctcggcc tcgtttcacc agtagttgca tgggcgaaga tgcggatgca aaatctatgg      4260
     ttgagttctg ttggttggga cgatcctcta tcggatgaca tctgctctaa atggaaagaa      4320
     ttttataatc aactgccctt gttgaaatcc ttcaaggtag cccggcatgt tttctggaac      4380
     aatgcgaatg acattcaatt ccatgtgttc agcgacgcat cggaagtcgg ttatggtgcc      4440
     tgtatgtatg cccgatcttc cagcatagat ggtagcatta agatggaact tatttcatcc      4500
     aaatcacgtg tagccccgat aaaacgaatc accttgcccc gattagaatt atgtgctgcg      4560
     ttgctagcag ccaagctcta cgctagagtt tcaacagcat tacgcatgga gggcatgaga      4620
     tgtttcttct ggtcggattc cactgtaacg ctgcactgga tacaagcatt gccaaatact      4680
     tggcaatgct ttgtcggaaa ccgaactgct gaaattcaac gcctcactca cggtcacagt      4740
     tggaaccacg taacaggagc agataatcct gcagattgca tatcacgcgg catgctacca      4800
     gaagaatttt tgttgaacct gtcttggcgc ggtggtccat cttggttatt gaagagtgag      4860
     aaacactggc ccaaacaacc cactctagaa actccctcag ataatgtgtt ggaaaaaagg      4920
     aaaacagtcg cggtaataca atcttctgcc ccaaaatgtt ccctttttga acaattctca      4980
     tcattttgga agctcgtaag agttactgct tacattctac gctttgtaga tcattgtcgt      5040
     aagaagcgcg ctgcaaaaga tgtattttta acggtaccag aattgacagc atccaagcgt      5100
     acattggtca aaagcgctca actcgaaacg ttctcaaatg aaatcaaggc aataaagaaa      5160
     ggacatccag tttcgtcaca atcacccttg aaaaatcttc ggctcgaact ggataacaac      5220
     ggcatccttt gtgttggtgg ccggctccaa ctctctgacg aagaagaaca ttttaaacgc      5280
     ccaatgattt taccaagcaa acacccgctc actcgactta tcgctaaaca ttatcatgaa      5340
     ttatcgcatc attctggccc tcgtatgaca ttagcttcca tacgccaaga gttttggccc      5400
     ctacgtggaa aaaatctcgc aaattttgtt tgccgtaaat gtcttacttg ctttcgccac      5460
     cgccctgccc ctgttagcca gcccatcgga caacttccca aagctcgagt aactcctagt      5520
     cggccattcg ctgtaatagg cgttgattat tgtggaccca tttacatcaa gcccattcat      5580
     cgtcgtgaaa atctccaata ccggtcaata ttgatgtggg ccaactagtc ctagttcagg      5640
     aggataacaa accatctatt acttggccac ttgctaaaat tgtagcaaca catcctggac      5700
     gagacggaat aattcgggtg gtaacaataa aaacagcagc aggaacatac agcagatcgg      5760
     tttccagaat ctatccattg ccttacgatg aaaatttaag accaccgatg atacctgata      5820
     gcgcgtcctg tgaagagttg aagcagtagt taaagctgat gtgatttatg ttaattacga      5880
     tctaaatatt taaaataatt gctttcaata atttcattag aatctcatga tgcaacgtaa      5940
     atttataaac aaatttaggt ggccggcta                                        5969
//
ID   BEL-834_AA-LTR repbase;    DNA;    INV; 569 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-834_AA-I;
KW   BEL-834_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-569
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-569
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2135-2135 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 569 BP; 177 A; 92 C; 142 G; 158 T; 0 other;
     tgttgacgaa gttgacagtt cgagaccaga agtactgaca gatcaaagat agaagagaag        60
     tgaaaaacag aaagggctat acatgttata acagttatag gacgtgaagc tagccgccta       120
     cagttatgtt tcgattttct gtctctatcg gtttatgttt catgttgcgt agaattgtct       180
     ttgtgtagaa ggtagaacgt agagaggtga aattaaattt gtgtttagtt tatgttcagt       240
     cttcgtagta aacggttctg atgaaattga tgtagtgttt ctatggaata aagttaatgc       300
     taaggctaga aggaagaaaa taaaactgtg ttctgtgtaa gagtgaccga ttgtttcgct       360
     gaattcgaaa ctggaggaaa taccgaagta tccctgctag ctgctatcgc accgccgtcg       420
     tgattatcgc catcgcaatc gtcacttgca aagggtgaaa aactggaagg aaggataaca       480
     gccatccgat cagctgttga caacatcgtt ctcagcaagt gacaccgtag gaatttctgg       540
     gacggaacgc aataggtaag gtcacaaca                                         569
//
ID   BEL-835_AA-I repbase;    DNA;    INV; 6073 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-835_;
KW   BEL-835_AA-I; BEL-835_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6073
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6073
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2121-2121 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6073 BP; 1710 A; 1473 C; 1478 G; 1408 T; 4 other;
     aatcttaaag atatttgtac gagggagaaa tatggatgga catcacaatg ccactggatt        60
     cagttgcaag aaatgccagc gtcccgattc ggccgaagag cagatggtcg cctgcgatgc       120
     atgtcaggaa tgggagcact ttacatgcgc cggtgtagat aggagcataa cggaccaacc       180
     atacttctgc agcgtatgta agttgaagaa caccggaggt aagtcgaagc agtcgttgaa       240
     accaccggat aagcaagaca agagatcatc aagagcatcg tcgaagaaaa caaccacgag       300
     agccaaccca gccccatcta gtatcagttc cgctacacga ttggccatgt tagaagcgca       360
     gatgaagcta ctggaagaac aggagatgca gcagaagcaa gatttagacg cggaagagga       420
     acttaagaag cgcgaaatgg aggaagccca taggcaactg gaggaaaaaa agaagttgtt       480
     ggatgaggag aatcgcctac gggaattgaa gctgaaggaa gagaaggaaa ttctggaaaa       540
     gcgcaaactt atgaagcagc agtccctgga gaaaaagaac gaacttctga aacagatgtc       600
     cgaatgtggt agcaaatccg gttcgaatat tgattcaatc gagaaggtat catcgtggtt       660
     ggcaaaacaa gaagacccgt gtccgttccc tacagacgca cttgttcaca ccatcctgcc       720
     accccccgcg ttgatacaac cagctgccac aacgtcggtg tccgttgcat cgcccattcc       780
     caccagcttt ccggcgcccg ttcaaacact ggtttctgca accgtgccaa gtacctcgat       840
     gcctgtacta atgaggtcct ccattcagca ccccgttcaa tcctccgccg caccaatgct       900
     ccgaacatcg catattccgc cgcagtcagt acttccgcaa attcccgtct cggcagccat       960
     cgaacaagct tatcagcctc caaatgcctg tcagccaccc gttcaatcta acatgtcgat      1020
     gcctgctcga aacccgcagc aacattcatt gatgttcacc agcgctggaa acgaattaag      1080
     ccaatcgcaa cttcagtcgt gtgggaatcc cgttgcacta tctggcgcct cagcagaatt      1140
     gagcactaat cagttggcag caagacaagt actggggaaa gacttgccaa agttcagtgg      1200
     tcgaccagaa gactggccgc tcttcataac aagctttgaa cagtcgacga cggcatgcgg      1260
     atacaccgac gttgaaaact tgatacgtct taagaaatgt cttgaaggta acgcactaga      1320
     gtctgtgcgt agcaagctat tgctcccgtc aagcgtwccg cacgttatcc aaactctacg      1380
     cacgctctat ggaagacccg agctgctgat acgaccgctg ctcgaaaaaa ttcatcacgt      1440
     cccgacgcct aggtacgatc gtttggagac cgtaatagaa tttggcattg cagttcagac      1500
     cctggtagat catcttgttg cggcagacca aaatgtacac ctctcgaatc cggccctcat      1560
     gcaggagcta gtagaaaaac tgccgggatc gatgaaaatg gaatgggcgg tttataagtc      1620
     acgtctcccg atagctacgc ttcaatcctt tggggagttc atgtccggaa tgactgcgag      1680
     ccaagtttcc tacgagcttc ctacactcga caggtccgga aaaaatgaga gggtgaaaat      1740
     gaagaaaggt atcgttcaaa ctcactctcc aggatatgca gctacttcaa cgccatcttt      1800
     atcaatggtt agaaccggga aatctgggaa accgtgtcca tgctgtagcc gagagggtca      1860
     tcgattgaac gaatgcgcgc gcttcaaatc gctcaatacc gaagatcgat ggaaactgac      1920
     ggaacagaag agcctttgcc gtacatgcct gaataaccac ggtaaatggc cttgtcggtc      1980
     gtggaaaggt tgcgaagtgg aaggctgtcg ccataaacac cacacgctgc tccatggtgc      2040
     accaacgaat tcgcaaactg gaatatccgc tagccatttg tctactggcc agttttgtat      2100
     gttcaggata gttcctgtca tgctacacgg aaatggacag aaactgttaa tcttcgcctt      2160
     tattgacgaa ggctcctcgg aaacgttgat tgaggagacc gttgccgaac agttgaatgc      2220
     aacggggcca accgaaccgw taacgctaca atggacggga aatgtctccc gagaggaatc      2280
     cagttcgcag agaatacaat tgaaaatcac cgcaaaaaat agcgcgtcgc ttcatgatct      2340
     ccatcatgtt cgtaccgtaa gctgtctggt tcttccgtca caaacgcttc gttatggaga      2400
     aatggtccaa cattttccgt acctacgggg gttgccaatc gaggactata ccaatgttca      2460
     gcccaagcta ctcatcggac tcaacaatct cagcttatgc gtgccgagga aactgcgtga      2520
     aggaggacca catgatccgg tggctgtcaa gtgtcatctc ggttggagta tatacggtgg      2580
     agtccctgct agtccgattc ggaacgtggc cgtgaatatt catgtcgctg ttccgtcaaa      2640
     tgttgataaa ttgctcaacg aacaacttcg cgagtatttc gccatcgaaa gcaacatgat      2700
     agcttctgga atccagaccg aatctgaaga cgacaaacga gctaacatgc tcctggaaac      2760
     gacaaccagg cgcatcgata agggtttcga aacaggtttg ctgtggaaaa ccgacgaggt      2820
     agagtttcct gacagctata gcatggcact tcgtcgactc ctatctctag aacgcaaatt      2880
     ccgccaagat ccagctttag gagaacgggt gactcaacaa ctacgtgact atgaacaaaa      2940
     gggmtatgcc cgccgaatag aagatgaaga gctgttctct tgcgatatca agcggacatg      3000
     gtacctcccc ctaggtgtcg taataaacgc caaaaagccc agtaagctgc ggctaatatg      3060
     ggacgcatcg gcaaaggttg gtgacgtgtc ctttaactcc aaactcctca aaggtccgga      3120
     tcttttgact ccactaccgg cagtgctttc tcgctttcgc caacatcmag tggctgtaac      3180
     aggggacatt aaagagatgt tccaccagat taaaattcga aaggaagatc aacactctca      3240
     acgctttctc tggcgggaac atccctctga aacaccgcaa atctacgtaa tgcaggtcgc      3300
     aacatttggc tctacctgtt cgccagcatc agcgcaattt gtaaaaaacc gcaacgccca      3360
     ggagttcgca gagcaatatc cacgagcagc gctagctatt cacgaaaacc actacgtgga      3420
     tgattacttg gatagcttcc aaaccatcca ggaggcggtt caggtagtaa atgaagtgaa      3480
     actcgtacac tcactgggag gatttgaaat tcgcaatatt ctttcaaatt cagcggatgt      3540
     attgcgaatg gtaggggaac taccaagtga taactctaag aatctgttgt tatctcgtgg      3600
     tgaatccacg gaatcagttc ttggaatgag gtggatacct gctgaagatg catttacgta      3660
     tacatttgcg cttcgtcctg atctgcaaaa ggtgctggca gaccataatg taccgactaa      3720
     gcgagaagtc ttgaaagtag tgatgagttt gtttgatcca ctaggctgca tttcgttctt      3780
     cttggttcac gggaaggttc taatccaaga gacttggatt tccaaaattg gctgggatga      3840
     tccaatcggt gagagcagct tggcacgatg gaagcaatgg accgggttct tcgagcagct      3900
     agcgtcatta agaattcccc gatgttattt tcgtgccccc ttccccagca gctttgatcg      3960
     acttcagctg cacatattcg tagacgctag cgagtctgcc tattcgtgcg ttgcatactt      4020
     cagactacca gttggagagc aggtacaggt agcgatggta acagccaaga ctaaagtggc      4080
     acctattaat actatttctg tgccgcggtt ggagctgaaa gctgccgttc ttggaactcg      4140
     tctcctggaa tcggtaaaac agaaccacac tatccccatt ccgcagtttt ttctgtggag      4200
     tgattccaaa acggtgcttg cttggataca atcggaacat cggcggtacc acaagtttgt      4260
     tgcagttcgc gttggtgaaa tattgctgac caccgacgta gataactggc gatgggttcc      4320
     atctaaacta aatccggctg acgaagccac taaatggaag aacggaccga atctaaaatc      4380
     agatagtccg tggtttcgag gacccgattt cttgaagcaa accgaaaggt gttggccaga      4440
     acaaatgcaa gctgcaacaa cacaggaaga actgcgcccc gttcatcttc accgagttca      4500
     atcttcagtt gtaaatcctg caaggttcag caaatggact aaattgcaac gaacgaccgc      4560
     atatgtcttg cggtatgtta acaacctgaa atgcagggtg gaaggacgtc caccaatcaa      4620
     cggaatactt agtcatgaag agctggcaag gtcagagaag ttcctttgga aaaccgcaca      4680
     agctgacacc tttcatgacg aaattacagt tcttcagaaa actcaaggac cacctgaagc      4740
     tcgccattgc gcggtaccaa aatccagccg tatttacaag cgatggcctt tcctggacga      4800
     agacggagtt ctacgtatgc ggggaagaat tggttcggcg cctttcatac agtacgaggc      4860
     aaagtttcct gctattctgc ctgataagca cccaataaca gtactgctag tggaatcatt      4920
     tcactgcaaa tttcggcatg caaatagaga aaccattacc aacgaactaa ggcaacgttt      4980
     tgacattccc aagcttcgag cattaattgg tcgagtaatg cgaaactgta actggtgtag      5040
     agtagcaaaa gcatctccca aaccaccggt aatggctcct ctgccagaag tacgtctcag      5100
     accctttatc cggccattta catatgtggg tttggactac tttgggccgg tattcgtaaa      5160
     ggtcggtaga agccaggcga agcgttgggt ggcactattt acctgcctaa ctataagggc      5220
     agtccacctc gaggtcgtcc acagtctcag caccgtatcc tgcattatgg ctattcgcag      5280
     attcgtttct cgacgaggaa cccctgcaga attttacacc gataacggca cttgttttca      5340
     gggtgcaagc aaggaattgg ccaatgagat aaaatctcgc aacgaaacaa ttgcactcac      5400
     ttttacgagc gcacagacaa agtggaactt tatcccacct tctacgcctc atatgggtgg      5460
     ggcatgggaa cgtcttgtgc gttcagttaa ggcggcagtc ggcaccatat tagattctcc      5520
     tcgccgcccc gacgatgaaa ccttggagac gattcttttt gaagccgagg ctatgatcaa      5580
     ctgtagacct ttaacgtatg tacctttgga gtcagcagat gaggaatctc ttaccccgaa      5640
     tcattttctc ctcgggagtt ctaatggagc gaagatcctg cctacggaac cagtcccaga      5700
     acacgctacg ttacggagta gttggaaact tgcccaacac atcactgatc aattctggcg      5760
     caggtggatc aaagagtttc tgcctgtgat cacacgcagg tctaagtggc acgaagaggt      5820
     gaaggatcta aaagtgggag atctagtttt ggctgtaaac ggtaccttaa ggaaccagtg      5880
     gatccgaggc cgcgtgattc aggtctttcc tggtagggat ggcagagtcc gacaagccct      5940
     agtgaagaca gcaacaggga tacttaagag agctgcggtt aaactagcgg ttcttgacgt      6000
     tttcgatcgt tgtaaaccaa atgaagaaaa gcctgagagt tcaacccttc accatggttt      6060
     acgggagggg gta                                                         6073
//
ID   BEL-835_AA-LTR repbase;    DNA;    INV; 550 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-835_AA-I;
KW   BEL-835_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-550
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-550
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2136-2136 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 550 BP; 196 A; 101 C; 85 G; 168 T; 0 other;
     tgtaacgaca agacccgtaa ttctggtggc actgccacaa atcaataata ccactttcca        60
     tccgtactcg gctcacagtt gtcaaactag atgattagca ggataggtat aagatcgaac       120
     aatacatcat acagcgaagc aagccgagtg ataacgtaag aaaatattga ttggtttttt       180
     gttaatttaa ttacctatta tgtacaattt tgcttaaaaa tactatttac agcgcttaca       240
     atctatcatt atacgttaaa acctaaatct accatgcaat atcgtgaaat ttgaaatatt       300
     acagtaaagt aagtacggtc aatgaaatat gcaacacaac ataactggaa aatttgttat       360
     tctagaggtg aactataacc agtggaattg tagatacgac tcatccctaa tttcagtttg       420
     gtacaccaaa tatgtaagtt cgttccttga ttattaaatg aattcgctga aataaaattt       480
     atttttagct ttaagctcac aaacgcaaaa atcgtgttgc tattaagacc tggtgatccc       540
     taaccccaca                                                              550
//
ID   BEL-836_AA-I repbase;    DNA;    INV; 6209 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-836_;
KW   BEL-836_AA-I; BEL-836_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6209
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6209
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-DEC-2018).
XX
CC   A rebuilt sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           516..5780
FT                 /product="BEL-836_AA-I_1p"
FT                 /translation="MSAAERKLRGLKNRKRSILASLSAIGSFLTSYQADRD
FT                 KREVPVRLENLIALWNEFNEVQGELETLEEVDEILEGYLKERTDVERLYYK
FT                 AKGTLLQLNQNDSLPAARPSDQNQVCHVKLPDIKLPIFDGNFESWLNFHDL
FT                 FVSLVHTSTSLSTIQKFYYLRSSLAGEALELIQTIPISNEQYPVAWNLLVG
FT                 HYQNTRRLKRTYVQSLFEFPCMRRETALDLHTLIDKFQANVKILKQLGEQT
FT                 EHWDVLLIHLLSTRLDAVTRRDWEEYAEANDTTKFQQLIEFLQHRVNVLET
FT                 MSNKSTEMLVPAKKPNTYRSANYGAPQQESWQCLVCSGKHFLYQCTDFAKM
FT                 TIDDKEQTIRRNRLCRNCFRRGHMAMECPSESSCRKCRGRHHTLLCYASRS
FT                 EGSSQSVSAVQSDPSSSNNEIMSSTPAAHMGVTSCISLHRSRTKVLLATAI
FT                 IIMVDESGKEHPVRALLDSGSECCFATERVAQQMQVRLSKVNLPIAGIGEA
FT                 ATKVRCKFQSTIKSRITNYCATIESFVLPKVTVDLPSISVDASSWSFPTGI
FT                 QLADPSFYQSGTIDVVLGAEVFFDLFSVAGRIPLGESLPCLVNSVFGWIIS
FT                 GKTSQEHLMSPVVCNVATTAELQRNMERFWTIEGDSAVVPSPSEAYCETFF
FT                 SETAVRCKDGRYMVRIPFKEDVLNKVGSNRRTALHRFRLIENRLGRDQLLA
FT                 AEYTEFMDEYEELGHMERIDNVEATSEPAYFIPHHPVIREESTTTKVRVVF
FT                 DASCKSASGVSLNDAMLVGPIVQEDLRAITMRSRLHPIMLIADIAKMYRQI
FT                 LLSPEDCQFHRIFWRRSLADPIQIYKLKTVTYGTASAPYLATRVLKQIALD
FT                 EGTNFPIAARAASEDFYVDDFFSGASTVDEAIELREQMDAMLNSAGMQLRK
FT                 WASNCPEVLEGVSPANRALEPSVDFAKDQSIKTLGLHWEPGSDQLKYVAPK
FT                 ASFNTDTVITKRSSLSSIAKLFDPLGLVGPVVVVAKVFMQALWSLKDENDK
FT                 PYDWDIELPDNMKRRWMEYYSELPRLNELRVDRFILVPDSTSAELHIFSDA
FT                 SLAAYGTCAYIRSSNTSGTVRVALLTSRSKVAPLKQQSIPRLELCGALLAA
FT                 ELYLKVSAALRIFSKAYFWVDSTTVLNWLKATPSTWSTFVGNRVSKIQQIT
FT                 ENSEWNHIAGRENPADIISRGLPAAELLLCQRWWEGPSWLRHEKESWPIQI
FT                 TESIDEEAAKEARKASFATALPSPTFVEDYVGRFSNYQHMLRITAYWQRYF
FT                 NNLRLPKSTRVISLPLSTAEILGAELTLVRLVQKDSFQAEMKAVRAKQTVS
FT                 PHSRLRWFHPIIDSDDVLRIGGRLDRSAQPFDSRHQILLPGSHPFTELLVR
FT                 SQHERLLHAAVQLLTNTLRLRFWILGGRNTTRRIVHNCVTCFRAKPKAIEQ
FT                 FMAELPSQRVTASRPFSVVGIDFWGPIYLKPRHRRDASPKAYVSVFVCFST
FT                 KAVHLELVVDLSTAKFLQAFRRFVSRRGLCADIYTDNGKNFVGSANELRKL
FT                 LCAEEFRHAVANECSSSGIRWHFNPPRGSHFGGLWEAAIKSAQKHFVRVLG
FT                 DRKLAFDDMETLLVQIEGCLNSRPLTKLSDDPSDLQALTPGHFLVGSSLQS
FT                 VPDVDYESIPMNRLQQWQQIQKMLQDVWKRWHVEYLQALQPRSKWIKPPVE
FT                 MKENQVVVIVDENQPPMRWPIARIHKLHPGRDGIVRVVTLQTSSGLLTRPV
FT                 AKICVLPVPSPNNDQSTPINQPPPQSGKTFLQTNN"
XX
SQ   Sequence 6209 BP; 1645 A; 1540 C; 1420 G; 1604 T; 0 other;
     ttggtccttc gaaccggatt gagcgtcgag aaaattccgc tcagaccaga aatgtggaat        60
     tgtcttcatt ggtcatctaa ttattaagat tctgctagtc attttgtaca aactgtatgg       120
     cgaatgcgcc atctcacagt ccacactgtt tcttattgga attaatacca ggcattttca       180
     tgcctcaccc aggtgagtgc aattccatgc aatctaacgt tatgtggaat gttctaccgt       240
     gatccttttt tgcatgtacc cttttctgct gtttggatgc tgtaattctc gtttggttga       300
     tgcgctgagc aacgaaattt acccactgat aaccaggact cgcagtggcc tgcagaaata       360
     ttctacaatc aacaaacagc taaaacaact tccacgacga taccaataga agcataattt       420
     tccgtcaact gcgattggcg caatcggcga ggagccattc ttaaaaatca aggcaatatt       480
     tgcctgatat cagattttca tcaaagattg cgaatatgtc agctgctgag aggaaactgc       540
     gaggcttgaa aaaccgcaaa cgcagcatcc ttgcatccct gtccgcgatt gggtcattcc       600
     tcactagtta tcaagccgat cgggataagc gcgaggtgcc agtgcgctta gaaaatctca       660
     tcgcattgtg gaacgagttc aatgaagtac agggtgaact tgagacgctg gaagaagttg       720
     atgaaatttt ggaaggatac ctgaaagagc gcacagacgt agagcggtta tactataagg       780
     caaagggtac gttacttcaa ctgaaccaaa acgattcgtt gccggcagca cgaccgtcag       840
     accaaaatca agtttgccat gttaagctac ccgatattaa gctgcccatt ttcgatggaa       900
     attttgagag ctggctcaac tttcacgatt tgtttgtgtc acttgtgcat acttcaacca       960
     gcttatcaac tatacaaaaa ttttattatt tgcgctcctc gttggctgga gaagcactgg      1020
     aattaattca aacgattcct attagcaatg aacagtaccc agttgcctgg aatctgttag      1080
     tgggccacta tcagaacact cgacgcctga aacgtactta cgttcaatct ctttttgagt      1140
     tcccttgtat gagacgagaa accgccttag acttacacac gcttattgac aagttccaag      1200
     ctaatgtaaa gattctaaag cagctaggag agcaaacaga gcactgggat gtgttattga      1260
     ttcatctact cagcacaagg ctggatgcag ttactagacg tgattgggaa gagtacgctg      1320
     aggcaaacga cacgaccaaa tttcagcagt tgatcgagtt tttgcagcat cgagtcaatg      1380
     tactggaaac tatgagcaat aaatcaacgg aaatgttagt accagcgaaa aaacccaaca      1440
     catatcgttc agcaaattat ggagcaccac agcaagaatc atggcagtgt ctagtatgct      1500
     ctggcaaaca ttttctatac caatgcacag attttgccaa aatgacaatc gatgataagg      1560
     agcaaaccat tcgacgcaac aggctttgcc ggaattgctt tcggcgagga cacatggcca      1620
     tggagtgccc atcagaaagt agctgtcgta agtgcagagg tcgacatcac acattattgt      1680
     gctacgcttc aagatcggag ggcagtagtc aatctgtatc cgccgtccag tcagacccgt      1740
     catccagtaa caatgaaata atgtcatcca ctcccgcagc acacatgggc gtcaccagct      1800
     gcatttctct gcacagatcc cgaacgaagg tcctgttggc tacagcgatt atcatcatgg      1860
     tagacgaaag cgggaaagag catccagtac gcgccttgtt ggactcaggt agcgaatgtt      1920
     gcttcgcaac ggagcgtgta gctcagcaaa tgcaagtgcg cttgagcaag gttaatttgc      1980
     caatcgcagg aatcggtgaa gcggccacca aggtccgctg taaattccag tcaaccatta      2040
     aatcccgaat cactaactac tgcgccacca tcgaatcttt tgtcctaccc aaagttactg      2100
     tcgatttgcc atcaatttct gtcgacgcgt cgagttggtc atttccaacg ggtatccagc      2160
     tagccgaccc gtccttctat caatccggaa ccatcgacgt tgtattggga gcggaagtgt      2220
     ttttcgattt gttcagcgtt gcgggacgta ttccattagg cgagtcgctt ccttgccttg      2280
     ttaattctgt gtttggttgg ataattagcg gtaaaacatc tcaagaacac ttaatgtccc      2340
     ccgtagtctg caacgtcgct acaactgccg agctgcagcg caacatggag cgtttttgga      2400
     cgattgaagg tgattcggca gttgttcctt ctccatccga agcctattgt gagacgtttt      2460
     tctctgagac tgcagttcgc tgtaaagacg gacggtacat ggtgcgcata ccattcaagg      2520
     aagacgtgct aaataaggtg ggaagcaata ggcgcactgc acttcatcgc tttcgattga      2580
     tcgaaaatcg actgggacga gaccagctgc ttgctgcaga atatacggaa ttcatggatg      2640
     agtacgagga gctaggccac atggagcgaa ttgataacgt ggaagcaacg tccgagcctg      2700
     cttactttat tccccatcat ccagtgattc gagaggagag taccaccact aaggttcgtg      2760
     tcgtcttcga tgcatcgtgc aagagcgcta gtggagtttc tttgaacgat gctatgttag      2820
     ttggtccaat cgtacaggaa gacttaaggg caatcacgat gcgatcccgc ttgcacccga      2880
     tcatgctaat tgccgacatt gccaaaatgt atcggcaaat tttgctgtct ccagaagact      2940
     gccaattcca tcgaatcttc tggcgccgat cactagcaga cccgatacag atctacaaac      3000
     tgaagactgt aacctacgga acggcttctg ctccatatct tgctacaaga gtattgaaac      3060
     agatcgcact cgacgaagga acaaactttc caatcgcagc tcgggcggcc agcgaagatt      3120
     tttacgtcga cgacttcttt tccggagcaa gcactgtcga cgaagccatc gaactccgtg      3180
     agcagatgga cgccatgttg aattcagctg gaatgcaact ccggaaatgg gcgagcaact      3240
     gtccggaagt actagaaggc gtttctcctg ctaatcgtgc cttagagccg tcggtagatt      3300
     ttgctaaaga ccagtccatc aaaaccctgg gtctgcattg ggagcccggc tccgatcagt      3360
     tgaagtacgt tgctcccaaa gcctccttca acacggatac tgtaattaca aagcgcagtt      3420
     ccctctctag catcgccaaa ttgtttgacc cactcggttt agtgggacct gtcgtagtcg      3480
     tagccaaggt cttcatgcaa gcactctgga gcctgaagga cgaaaatgac aagccatacg      3540
     actgggatat tgagctacca gataacatga agcgccgctg gatggaatac tactctgaac      3600
     tgcctcgttt gaatgaattg cgcgttgata ggttcatctt ggttccagat tctacctctg      3660
     ctgagctgca catcttttct gatgcctctt tagccgctta cggaacatgt gcttacatcc      3720
     gatcgtcaaa tacctccggg acagtcaggg tagcacttct gacgtctcgc tcaaaggtcg      3780
     caccactcaa gcaacaaagc attccccgat tagaactttg tggtgcacta ttagccgctg      3840
     aactttacct taaggtctcc gctgcgctgc gtattttttc taaggcgtac ttctgggttg      3900
     attcgacgac cgttttaaat tggctcaagg caacaccgtc gacatggtcc acgttcgtcg      3960
     gcaatcgcgt ttccaaaatc cagcaaatta ctgagaacag tgaatggaac cacatcgctg      4020
     gtcgtgaaaa tcccgccgat ataatttcaa gaggactgcc agcggcggag cttctcctgt      4080
     gccaaagatg gtgggaagga ccttcatggc tccgacacga aaaggaatca tggccaattc      4140
     agatcactga aagtattgat gaagaagcgg caaaggaagc acggaaggct tcatttgcaa      4200
     ctgcgttacc atcgccaaca ttcgttgaag attacgttgg tcgattctcc aactaccaac      4260
     atatgctgcg gatcactgcg tactggcagc ggtacttcaa taatctacgt ctaccaaaat      4320
     ctacacgagt catttccttg ccactatcta ccgccgagat tcttggcgct gaattgactc      4380
     tcgttcgttt ggtccagaag gacagctttc aggcggaaat gaaggctgtc agagcaaaac      4440
     aaactgtttc tccacactct cgtcttcgtt ggttccaccc aatcattgac tcggatgatg      4500
     ttctacgtat cggtggacgt cttgatcgct cggcacaacc tttcgattcc cgccatcaga      4560
     ttctgctccc aggttcacac ccgttcacgg aacttcttgt tcgtagtcaa catgaacgtc      4620
     ttcttcacgc agcagtgcag ctactcacca acactcttcg gctgcgattt tggatcctgg      4680
     gaggcagaaa tactactcgg aggattgttc acaactgcgt gacatgtttc cgagcaaaac      4740
     ccaaagccat cgaacagttc atggccgaac ttccgtcaca acgtgtcaca gcatcgcgac      4800
     cattctccgt agtcggaatc gatttttggg gtccgatcta tttgaagcca cgccatcgtc      4860
     gagacgcgtc accgaaggcc tatgtttcag tattcgtgtg cttcagtaca aaggcagtcc      4920
     acttagaact tgtagtggat ctcagtacgg ccaagtttct tcaagccttc cgtcgttttg      4980
     tttctcgccg tggtttgtgt gcagatattt acactgacaa cggcaagaat ttcgttggtt      5040
     ctgccaacga gctgcgaaaa ctattgtgcg ccgaagagtt caggcatgct gtcgctaatg      5100
     agtgttcgag ttccggcatt cgctggcact tcaatcctcc tcgtggatcc cattttggag      5160
     gactatggga agcggcgatt aaatcagcac agaaacattt tgttcgtgta ttaggagatc      5220
     gaaaattagc ctttgacgac atggaaacgc ttttggttca aatcgaagga tgtctgaatt      5280
     ctcgtccgtt aacaaaatta tcggatgatc cgtcggatct ccaggcccta acaccgggtc      5340
     atttcctagt cggatcttcg ctgcagtcag tcccagacgt cgattacgaa tcgattccaa      5400
     tgaaccgtct tcaacaatgg cagcagatcc aaaaaatgct tcaggacgtc tggaaacgct      5460
     ggcacgtaga atatctacaa gcgttgcaac ctcgcagcaa atggattaaa ccaccggtag      5520
     agatgaagga aaatcaagtg gttgtcattg tggacgaaaa tcaaccgcca atgcgttggc      5580
     ccatcgctcg aatccacaag ctccatcccg gacgagacgg tatcgttcgc gtcgttacgc      5640
     tgcagaccag ctctggcttg ctcacccgcc ctgtggccaa aatttgtgtc ctacctgttc      5700
     catcgccgaa taatgaccaa tcaaccccca tcaaccaacc gcctccgcag tctggtaaaa      5760
     cgtttcttca gacaaacaac tgagcatcat cgacttcagc atgtcgatca acgtcgagta      5820
     caatgatgta gacgacttta attcaaggcc ctcaaaacgt agggtccagg taaggacctt      5880
     tccaagatca accacccgtt cgtatcaagc ttccgggtct tactctcttt tgcatgtttg      5940
     gagcctaatc aacactgtcg agaactacaa caaccaacgg attactgccc acagctttcg      6000
     acaaggttta gacgaatttg acgttagttt ggcaaggctc tctatccaga gggtccaggt      6060
     gaggacctgt ccatttctct ttactcagta gaaaaggtct accgttgatt ccttctttac      6120
     atgtcgctca tctacgagat cttcaccacc attcatcgag gtcttaagtc gtcgtggtcc      6180
     agaaatagtt atttctgcgg agggcagga                                        6209
//
ID   BEL-836_AA-LTR repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-836_AA-I;
KW   BEL-836_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-536
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-536
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2137-2137 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 536 BP; 162 A; 117 C; 105 G; 152 T; 0 other;
     tgttggatat catgtcctct tatctgtgga ttgtcaccca tctctcacca acgtagtcac        60
     tcgacgatca accatcgatt ggtcagtaca catagaccag gcgaccctac atgtgtgaga       120
     cgaagttctc tgttgttcat catccacatc tactcaatac atgaccggca tggacgagag       180
     ggatgacaca ctacactctt ggctctgatc aaatacccca accgaaccag tgcagatcga       240
     tcctccgtcg tcgtaaggcg tgttacccac agttatcgtg tcgaatctac gttttcgtta       300
     gtttgttgtg atcaatgtca aaattctcgt tgttatgttg ctagactaag ttaaacaata       360
     aattaagtta caaacattta atcttaagaa taaatgcgcg agtgctagtg aataagaata       420
     aaacttttgt ttaaatctac cgtgcaagca attctgtgtt gaaagtgtga atccatagaa       480
     atagaccatc aaaggaaagt gaaggcagag tccgctagtt ccctgaagat taaaca           536
//
ID   BEL-837_AA-I repbase;    DNA;    INV; 6826 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-837_;
KW   BEL-837_AA-I; BEL-837_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6826
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6826
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-DEC-2018).
XX
CC   A rebuilt sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(35..5857,5861..6613)
FT                 /product="BEL-837_AA-I_1p"
FT                 /translation="MEKSFVRQTRSKAKAAKTSDPSSDVHLCTMDRDPDPS
FT                 DDGFKPSMTDFEHGHDRDCAVCDRLNNAELYMVQCGVCKRWNHFSCARVDT
FT                 KTVHLREFCCAQCSSKQKSDRPTRSLSSRSSAASSRRSQIDREIQRLEDER
FT                 RVEEKIEEERLRQEKMLIEKAAKEKLEREMQFIAKKHELLRQQDDDIESTM
FT                 SRHSSRSSIQKVENWVQQQISHTGPIDDREKDPVPKPALPQSIPVGSSTPL
FT                 ERSEVSVVQRQQKVASLPDSVPRTVESIAIGESPEEEYPKLELVNIQPYTR
FT                 MLDESEPSESNPIPSSGTRTIPKNVKRATNPTLFEMWHRETRGLRAQHFQE
FT                 VLQMDKGEKQQYENRLHEIESSLQRQREMELQHQQENDLRRRREIELVNRL
FT                 NRLEQQRAEEQRQLHEVENALKQQLEESQWRYQALETKRNQEQAARDEELR
FT                 RLQEREQLLIHQLKAVRITNNSPVFLPHDITPCQPQNMTQFHQRDATLDRQ
FT                 QEDVLVGQGRGVSNPLTTSVSGSQYNQYEEYSVAYSDRDVPCPTAINPLGR
FT                 VETPCTFTINNELGSNHARQGHTQFHPYHPPEFNSLSSNNLIQGQFGPTRQ
FT                 QIVARQVIPKELPVFSGDPTEWPLFISSYQHSTLSCGYSDSENLLRLQRAL
FT                 KGSAKEAVSSLLLHPSTVPQIMSTLHTLYGRPEQIVHHMVAKVRATPAPKA
FT                 DRLETLIQFGLVVQNLCGHLKAIGMDNHLSNPILLQELVDKLPANIKFSWA
FT                 LYQEQQPTVNLSTFGDYMRKVTAATSGITNVSLITKPTKDDKSRTKEKAFV
FT                 NTHSAYEKKWERREQSWNPKCSGNEDKKECPMCKSREHVAEKCSNFEELSV
FT                 SERWRFVKENKLCRRCLVSHTRWPCEGEICGVNGCQKRHHQLLHYDPEPEV
FT                 PLNTTNATVTVHQASVTSTMFKILPVRLYGKTGSIDTYAFLDDGSSVTLLE
FT                 KAIADELGLDGKLRSLCMQWTGGIDKKVATTEIAKLGISEPGSKTLLQLSE
FT                 VYTVDNLGLPEQSMNYDDLAKQYKHLQRLPVKSFQRANPGLLIGVNNIHLL
FT                 TTSKVREGNEREPIAAKTRIGWVVCGCLRGEENQFQHRQMHICAEATDAEL
FT                 HNYVREFFSVESLGVALAPNLEGTDDQRARRILEETTVRTASGKFETGLLW
FT                 KQDDFKFPDSRSMAERRLKCLERRLAKNPTLYDAVRQQIADYKSKGYIHEV
FT                 TDEEMAEFDPDRTWYLPLGVVLNPNKPGKVRVIWDAAAKVNGVSLNTMLLT
FT                 GPDLLTPQLTVIFKFREREVAFSGDIQEMFLQVGIKKQDRSALMFVFRNSP
FT                 SHPMVTMVSDVAIFGATCSPAQSQYVKNLNAARHVHEFPRAAAAIADRHYV
FT                 DDYLDSVDTEEEAIQLALEVATVHQKAGFHIRNWVSNKPKVLEAIGEVNPA
FT                 TVKNLTMNNQSGFERLLGISWLLAEDAFCFKLGLQGDLEELAKGEKAPTKR
FT                 MMLSFLMRIYDPLGLVGSLVIQGKIPIQDVWRAKTEWDQQVPEDIFGRWKS
FT                 WLQVLRELDNVRIQRCYFSGYDPACYDSLKLHVFVDGSAQAYSAVAYFRVC
FT                 DRGQIRCSLVASKTKVAPLQLLSTPRIELQGAVIGARLRKTIDEGHSVKIK
FT                 RTYFWSDSSTVVSWIRSDTRRYRPYVAFRVNEILNLSSIDEWQWLGTKLNP
FT                 ADEATKWGKGPNCKSNSRWMRGPEFLYEDESEWPKQKSDFPTETAEELRPA
FT                 FVCSHFLMIPTINIDRFSKYERLLLSVAYVHHFCDIALRRSKKDQTNHPEV
FT                 LTRDDLQKAEQTLWRIAQAEHYSDEVATLKRNLYADLQERKNLDKSSPIAK
FT                 LSPQLDEHGILRIDSRIAAAEYVSYDTRFPIILPRQHQITKLLLDWYHREY
FT                 RHANNETVVNEVRQRFYIPRLRVEVRSAALRCQWCRVYKVKPVAPKMGQLP
FT                 RMRFTPFLRPFTFVGIDFGPYYVKVGRSSVKRWVALFTCLTVRAIHLELAY
FT                 SLTTDSCKKAIRRFIARRGAPQEIYTDNGTNFVGASKELQCDLQALNTAMG
FT                 STFTDTNTRWMFNPPAAPHMGGCWERMVRSVKTALGSLPTTRKLDDEGFLT
FT                 LLAEAEHIVNSRPLTFLPLENEQQESLTPNHFIMLSSKGVRQGTKAPVDLK
FT                 KALLDGWTLLQQLLDMFWQPWIIEYLPVISRRSKWFQDVALVKEGMSVVII
FT                 DERNRNEWMRRRE"
XX
SQ   Sequence 6826 BP; 2016 A; 1514 C; 1720 G; 1576 T; 0 other;
     ttaactcaaa gatttaacgc atatcaaccg aaggatggag aaatcattcg tccgtcagac        60
     ccggtctaag gccaaggcgg ccaaaacttc tgacccctct agcgatgtac acctgtgtac       120
     tatggacaga gaccctgatc cgtcggatga tggatttaag ccttcaatga ccgattttga       180
     gcatgggcat gatcgagact gcgcggtttg tgatcgactc aacaatgctg agctgtacat       240
     ggtacaatgc ggagtatgta agcgttggaa ccatttctcg tgcgcgaggg ttgatacgaa       300
     aactgttcat ttgagagagt tttgctgtgc ccaatgttcg tcgaagcaaa aatcggatcg       360
     accaactaga tcattatcta gccgatcgag tgccgctagc agtcgtagat ctcaaattga       420
     tcgggaaatc cagcgtttgg aagacgagcg gcgcgtcgag gaaaagattg aagaagagcg       480
     tctacgacag gaaaaaatgc tgattgaaaa agccgctaaa gagaagctgg aacgagaaat       540
     gcagttcata gccaaaaaac atgaactgct ccgccaacag gatgacgata tcgagagcac       600
     catgagtcgt cacagtagca gaagtagtat ccaaaaggtc gagaattggg ttcagcagca       660
     gattagccac actggcccca tcgacgatcg tgagaaagat cccgttccaa aaccagcctt       720
     accacagtct atcccggttg gatcatctac tccgttagaa cgcagtgagg taagcgttgt       780
     tcagcgtcag caaaaggtag ctagcctacc agattctgtg cctcgtactg ttgaaagcat       840
     cgcgattgga gagagcccgg aagaagagta ccccaagctt gagcttgtga acattcagcc       900
     atatacgaga atgttagatg agtcagagcc atccgagtcg aatcctatac cgtcctcagg       960
     aacaagaacc atcccgaaaa acgttaaaag agcgacgaac cccaccctgt ttgagatgtg      1020
     gcatcgtgaa acacgcggac tgcgggcaca acattttcaa gaggttttgc agatggacaa      1080
     gggcgaaaaa cagcaatatg agaatcggct gcacgagatc gaatccagtt tgcaacgaca      1140
     acgcgaaatg gagttgcagc atcagcagga aaatgatctg agacgaaggc gggagataga      1200
     gctcgtgaac cggttgaatc ggttagaaca gcagcgggcg gaagagcaac gacagctaca      1260
     tgaagtggaa aacgcgttga agcagcagtt agaggagagc caatggcgtt accaggcgtt      1320
     ggagaccaaa cgaaatcaag agcaagctgc gcgagatgaa gaattacgtc gattgcagga      1380
     gcgagaacaa ctactgatcc accagctgaa agcagttcgt ataactaaca attcccctgt      1440
     gttcctgccg catgatatca caccgtgtca gccgcaaaat atgacacagt ttcatcaacg      1500
     agacgccact ctagaccgtc aacaagaaga cgttctggta ggacagggta gaggcgtgag      1560
     taatcctttg acaacatcgg taagtggatc tcaatacaat caatacgaag aatattccgt      1620
     agcatattcc gatcgagacg ttccttgtcc cactgctatc aacccattag gtagagtaga      1680
     aacgccatgt actttcacca taaacaatga gctaggatca aatcatgcga ggcagggtca      1740
     tacgcaattc catccatacc atcctcccga gttcaatagt ctcagtagta ataatttgat      1800
     acagggacag tttggaccta cgcggcaaca gatagtagct agacaagtta ttccgaagga      1860
     acttcccgtg ttttccgggg atcctactga gtggcctctt ttcataagta gttaccaaca      1920
     ctcaacacta tcctgtggct actccgactc tgaaaacctg ctacgcctac aacgtgcgct      1980
     gaagggtagc gcaaaagagg cggtaagcag ccttctgctg catccgtcta cggttccgca      2040
     aataatgtca accttacaca ctttgtatgg aaggccagaa caaattgttc atcacatggt      2100
     agctaaggtt cgcgctactc ctgctcctaa agcagacagg ctagaaacat taatccagtt      2160
     tggcctggtc gttcaaaatc tgtgtgggca tttaaaagcg atcggaatgg acaatcacct      2220
     ttccaatccc attctgctac aagaacttgt tgataaactg ccggctaaca tcaagttcag      2280
     ttgggcgttg tatcaagagc aacaaccgac cgtcaaccta agtacgtttg gggattatat      2340
     gaggaaagta accgcagcca ccagtggaat taccaatgta tccctcatta caaaacctac      2400
     gaaggatgac aaatccagga caaaggagaa ggcgttcgtg aacacccatt cagcatacga      2460
     gaagaagtgg gaacgaagag aacagtcatg gaatcctaag tgcagtggaa acgaggataa      2520
     aaaggaatgt ccaatgtgca aaagtcgcga gcacgttgca gaaaagtgtt ccaactttga      2580
     ggagttgtca gtgagcgaac ggtggagatt tgttaaagaa aataaacttt gccggaggtg      2640
     tcttgtgtca cacacacgat ggccttgtga aggagagatc tgcggggtca atggatgtca      2700
     gaaacgtcat catcagctgc tgcattacga tcctgaaccg gaagtgcctt tgaatactac      2760
     gaatgccacc gtcaccgtcc atcaagcatc cgttacttca accatgttca agatactgcc      2820
     tgtaaggcta tacggaaaaa cgggctccat cgacacgtat gcattccttg acgatggttc      2880
     gtctgtaact ctcttagaga aagcaatagc agacgaacta gggctggatg gtaagttgcg      2940
     ctctctatgc atgcagtgga ccggcggtat tgacaaaaaa gtcgctacca ctgaaattgc      3000
     aaaactgggc atatcggaac ctgggagtaa aacgctatta cagttgtcag aggtctacac      3060
     tgttgataat ctaggcctgc cggagcaatc gatgaattac gacgacctgg caaaacaata      3120
     caaacacctg caacgtttgc cggtgaagag tttccagaga gctaatcccg gtttgctgat      3180
     cggagttaac aatattcacc ttctaactac ttctaaagtt cgtgaaggaa atgaacgaga      3240
     gcccatcgct gcgaaaaccc gaattggttg ggtagtgtgt ggatgtctgc gtggtgaaga      3300
     gaatcagttt caacatcgcc aaatgcacat ttgtgcggaa gcaaccgatg ccgagcttca      3360
     caactacgtc cgagaatttt tctcggtgga aagcttaggt gtcgcgctcg caccgaattt      3420
     ggaagggaca gacgatcaac gcgcacgccg aatccttgaa gaaacgacgg tacgtacggc      3480
     gagtgggaag ttcgagactg gtttgctgtg gaagcaggat gacttcaagt ttcctgatag      3540
     tcgatcgatg gcagagcgcc gtctaaaatg tcttgaacga cgtctagcaa agaatccaac      3600
     actgtacgat gccgtacgtc agcagatagc tgattataag tctaaaggct acatccacga      3660
     ggttaccgat gaggaaatgg ccgaattcga tccagaccga acatggtatt tgccgctagg      3720
     agttgtgtta aaccccaata aacctggtaa agtgcgtgta atatgggatg cagctgcaaa      3780
     agtgaatggt gtatcattga acacgatgct actgacgggc ccggacctgc tgactcctca      3840
     gttgaccgtc atcttcaaat tccgcgaacg cgaagtggct ttttctggag atattcagga      3900
     aatgttcctg caagttggaa ttaaaaagca ggatcgaagc gctttaatgt ttgtttttcg      3960
     taactcgcca tcacatccca tggtcacgat ggtttcggac gtagctatct ttggagcgac      4020
     ctgttctcca gcacagtcgc aatatgtcaa aaatttgaat gcagcgcgac acgttcacga      4080
     atttccacga gcggccgcag caatcgcaga caggcactat gtcgatgatt acttggacag      4140
     cgttgacaca gaggaagaag cgatccagtt ggcgttagaa gtggcgactg ttcatcaaaa      4200
     agcaggcttt cacattcgta attgggtttc caataaaccc aaggttctgg aagcaattgg      4260
     agaggtcaat ccggctacgg tgaagaacct aactatgaat aaccaaagtg gtttcgaacg      4320
     attattggga atttcatggc tactcgctga agacgcattt tgctttaagc tcggcctaca      4380
     aggcgacctc gaagaactag cgaaaggtga aaaagctcct actaaacgaa tgatgctaag      4440
     ttttttgatg aggatctacg atcccttagg attagtaggt tcactagtta ttcaaggcaa      4500
     aataccaatt caggatgttt ggagagctaa gacagagtgg gatcaacagg ttcctgaaga      4560
     tattttcgga cgctggaaat catggctgca agtgctgagg gagctcgaca acgttagaat      4620
     ccagcggtgt tatttttctg gctacgatcc tgcgtgctac gattcattga aactccatgt      4680
     ctttgtggat ggcagcgcac aagcatattc cgcagtcgct tatttccgtg tttgtgaccg      4740
     agggcagata cggtgttccc tggttgcgtc caaaacaaaa gttgctcctc tacagctatt      4800
     gtcaactcct cgtattgaac tgcaaggagc ggtcatcggc gcacggcttc gtaaaaccat      4860
     cgatgaaggg cactctgtca aaatcaagcg aacgtatttc tggagcgact cgagcacagt      4920
     cgtctcctgg attagatcgg atacaagacg ttaccgaccg tatgtggctt ttcgtgtcaa      4980
     cgagatccta aatttatcaa gcatcgatga gtggcaatgg ttaggcacga agttaaaccc      5040
     ggcggacgag gcaacgaaat ggggaaaagg tccaaactgt aagtcaaaca gcagatggat      5100
     gcgtggtcca gaatttctgt acgaagatga gagtgaatgg ccgaagcaaa aatcagattt      5160
     cccaacggaa acggcagaag agttacgtcc tgccttcgta tgcagccatt ttttgatgat      5220
     tcccacgata aatatcgatc gtttttcaaa atatgaacga cttttgctta gtgtcgcata      5280
     cgttcatcac ttctgcgata ttgcactgcg gcgctcgaag aaagatcaga ccaaccatcc      5340
     agaagttcta actcgtgatg atctgcagaa agcggaacaa actttatggc ggattgcgca      5400
     ggcagaacat tactcagatg aagtggctac gttgaaacga aatttgtatg cagatctaca      5460
     ggagagaaag aacctggaca aaagtagtcc cattgcgaag ctttctcccc aactcgatga      5520
     acatggaatt cttcgtattg acagccggat tgcggctgcc gaatatgtca gctacgatac      5580
     cagattccct attattttgc caagacagca tcaaataacc aaactgctgc tggattggta      5640
     ccaccgcgag tatcgtcatg cgaacaacga gacggtggta aatgaagtaa ggcagaggtt      5700
     ttacatcccg agattacgag tcgaagtacg atccgccgcc cttcgctgtc aatggtgtcg      5760
     agtatacaag gttaaaccag tagcaccgaa aatgggccaa cttccacgga tgcgtttcac      5820
     accgtttcta cgaccgttca cgttcgtagg aatcgattaa tttggaccct actacgtaaa      5880
     agtaggccgt agctcagtga agcgttgggt cgctttattt acttgcttaa ctgtccgggc      5940
     aatacatttg gagttagctt acagcttaac gactgattca tgtaagaagg ccatccgaag      6000
     atttattgca cgaagaggag ccccgcaaga aatctacaca gacaacggca cgaatttcgt      6060
     tggggcaagt aaagagcttc aatgtgattt acaagcgctc aatactgcga tgggtagtac      6120
     ttttacggat acgaacacta gatggatgtt taaccctcct gcggcgcccc acatgggagg      6180
     ctgctgggag cgtatggtgc gatctgtgaa gacagcacta gggtcgttac cgacgacgcg      6240
     gaaactagac gacgaaggtt tcctaaccct gttagctgaa gccgaacata ttgtcaactc      6300
     gcggccgtta acgttcttgc ctctggagaa cgaacaacaa gagtctttga cgccgaacca      6360
     ttttattatg ttgagctcta aaggagtgcg tcaaggaact aaagctcccg tggatcttaa      6420
     gaaggcgttg ttagacggat ggactctgct tcagcaattg ttggatatgt tttggcaacc      6480
     gtggatcatt gaatacttgc cggttatttc gcggcgaagc aaatggttcc aagacgtcgc      6540
     tctggtaaag gaaggaatgt cagtggtcat aatcgatgaa aggaatcgta acgaatggat      6600
     gagaagacgc gaatgaccta tatggttaaa gcgtctataa tgaaaaaaaa aaatggatga      6660
     gaggaaaggt gttgcacaca tacccaggca aggacggaat tgctcgtaga gcagatgtga      6720
     agacgcaaaa cggaataatt agcagaccag tcaacaaact tgctgtcctt gatgtgaacc      6780
     gaaacggtga cgccgagaag gacctcgggc gccacggggg ggagga                     6826
//
ID   BEL-838_AA-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-838_AA-I;
KW   BEL-838_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-420
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-420
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2138-2138 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 420 BP; 151 A; 62 C; 83 G; 124 T; 0 other;
     tgttaccggc aaccctgcca ctgggcagtc cctcaactag gtcagatagt gtgagtacag        60
     agacccgaac gaacacgtat ctgtcattcg tactgtcagt gagatagatg ttagatgaaa       120
     gttgcaatgt catttgtgaa ctaaaaagaa agctgaaatt atcaagtaaa tattgaatta       180
     aggaataatt tatacaaatt tattgagttt atattattgc agattaatta tattaaattt       240
     attgaagaag tgtgttgtag aactattgcg aggtaaaagg agactaaatg taagttgaca       300
     attgaactag acttgaagta ttcttaactg aaataaataa attacagctt tgagcttact       360
     ttgatcggga acaaggacga gtttgcttca aaagacctcc gaaaccaaac gttctcaaca       420
//
ID   BEL-839_AA-I repbase;    DNA;    INV; 5775 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-839_;
KW   BEL-839_AA-I; BEL-839_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5775
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5775
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2176-2176 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           412..4899
FT                 /product="BEL-839_AA-I_1p"
FT                 /translation="MDGSVKHTPIADQKKQKKLSAMEQKMNDFEFRRQAVA
FT                 SKLQRIKNVLANPEEITVHHLETYLRRVDACYDEYNIIQNEIYTAFPDQRV
FT                 DQEGYFIVFEQLYEEIRVAICSTMEAYRMRQVVDPRMPGVAVPAEQQQVIV
FT                 NQPAGLPTVPLPTFDGTYERWFRFKQLFQDLMQKHPGLSDATKLHYLTQSL
FT                 KGKAENVLSEQILNENNFQAAWNLLEERFENKRTIIDIHVGGLLNMKKMNK
FT                 ECSSDLRQLVEECSRHVEALEFHEQPMEGMSEQLVVSLLTSKLDKATLSLW
FT                 ESTIKPKELPGYKATIQFLQNRCFVLERCEASTSHRSNEGMKQKQIVPAPK
FT                 QHIKVHAALQTYESVCAFCEESHNVNKCNTLKQMTLPEKIAAVKEKQLCFN
FT                 CLKRGHRVNQCKSRLCTVAGCGKKHHTQLHSEVPVLSEKPAEEGSVPESNK
FT                 TVPAQSETSRSTVTCSSTSCERAQPYKNEVILSTAVVYVKDVRGCYRSCRA
FT                 LLDSGSQSNFLSEHFVKMLRLKLDNVRVPVIGINGEKLTATQRTTAGVKST
FT                 IGESSWNLEFLIVPQVTGILPMQKIDVRQWKIPPNIQLADSRFNIPARVDM
FT                 LIGAELFYDLLITERLKLNNGQPMLWRSELGWIVCGSYRSSQRPVVVTTAH
FT                 CQSTEVSLENSVQRFWEQEEVPETGMLSTENQQCIEHFNTTHRRENGRFVV
FT                 RLPFRSTVNQLGDTRHLAERRFKQLEKRFAKDPELKKQYVSFINEYVSLEH
FT                 CRIVDEDGDSRGCYLPHHAILRPASSTTKLRVVFDASARSDTNLSLNDVLI
FT                 TGPVVQDSLMAIVLRFRRYKYVFTADIVKMYRQIRVDESDSPYQKILWREC
FT                 PQEPLVTLELMTVTYGTSCAPFCATACLKQLANDEETNFPIASKVVRKDFY
FT                 MDDVLSGADELSKALECQDQLIALLHRGGFKLHKWCANAPELLERFPVTDR
FT                 EVQAKIEDRTPNEVIKTLGLLWDPNNDVFLFITQPHAEMREYNTKRTVLSD
FT                 TAKIFDPLGLLGPVIVVAKLFIQELWSRDVNWDERLTADQEDRWKRFTQEL
FT                 QSINELLIPRRAIAEDAVAFEIHGFSDASQKAYGACVYLRSIKADGTAEMH
FT                 LLSSKTRVAPLPKRPGSKRSGKPFTIPRAELCGALLLARLVVAVIDAMDLE
FT                 VNAVVLWCDSQIVLCWLSKSPETLEVFVGNKVREINQLTNSFEWRYISTKE
FT                 NPADLASRGINAPALKQSSIWWNGPSMLHNADYRYQHLESVPFNEEQLEIR
FT                 DPVLTNVSVLVQPSELLTRYSDFRRLQCVVAYIYRFLNNCRQKNKSLRSIG
FT                 FLTVIELRSASQKIIKLTQHEGFADELRMLKTGRTKKSKLLPLDPFIDREG
FT                 LLRVGGRLKHASVPFGKKHQLLLPHSHHVTRMLIATLHKEHLHIGQQGLLA
FT                 IIRQRYWPVRAKCIIRQIVKKCVKCFRMHPPEVVQFMGSLPDYRVNPSPVF
FT                 YNTGIDYAGPFFVRQGVRRATKVKVYVALFI"
FT   CDS           4903..5748
FT                 /product="BEL-839_AA-I_2p"
FT                 /translation="MSTKAIHLEVVSDLTTAAFLTALHRFVGRRGCPEKLV
FT                 SDNATNFQGAQSELQELHRLFQAQQFREEVNHFCAAKEIQWSFIPPRSPNF
FT                 GGIWEAGVKAAKSHLKIVLCEASLNYEEMSTLLVQIEAILNSRPLTQNSTD
FT                 ANDLTALTPGHFIVGRELTAVPEPSYSNVRVSSLSRWQHLQKLKQDFWSRW
FT                 SAEYLSELQPRSKWYKGKITIVPGMLVVIREDNMPPQLWHLGRITEVTPGA
FT                 DGLVRVVKIRTANGQMSRSISKIAILPIEDNVVHRSGADVI"
XX
SQ   Sequence 5775 BP; 1661 A; 1307 C; 1456 G; 1351 T; 0 other;
     tttttttggt ccaattatcg aaccggattt cgcggagtga tcggtcccga gcgactaagt        60
     ggagtttccg aggaaaccac ttctttccgc gagtgaaaac caattcgtga tcctgcatcg       120
     gttggcatgc atcggatgcg aatcgtttac agttcataac ctcaattccg cgttggtcct       180
     gcttggagct gccggaaaac cgaagaagcg tcgacttccg aggaagcctg accttgtagc       240
     tgtggaagaa gaaagcgtcg acttccgagg aagccggccg gaagtgatta ccagccgagc       300
     cgctgatagt tgtgacgata attgccttgc actggcagtg aacattcagt gagacaaaga       360
     aagagaaaaa gactatggtc caatgcacag tggcaaaaac agtgaaaaat aatggatgga       420
     agtgtaaagc atacgccgat tgcggatcaa aagaagcaaa aaaagcttag cgccatggag       480
     cagaagatga acgatttcga attcaggagg caagctgtgg cttcgaaact gcagcgaata       540
     aaaaacgtac ttgcaaaccc agaggaaatt acagttcacc atttggagac ttatctgcgt       600
     cgggttgatg cctgttatga cgagtataat atcatacaaa acgagattta tactgcgttt       660
     cctgatcaac gtgtcgatca agaaggctat tttatagttt tcgaacaact ttatgaagag       720
     atacgagtag cgatttgctc gaccatggaa gcatatcgaa tgcgacaggt tgttgatccc       780
     cggatgcctg gtgtcgctgt acctgccgaa caacagcaag ttatcgttaa tcaaccggct       840
     ggattaccta cggttcctct accgacattc gatgggacat acgaaaggtg gttcagattt       900
     aaacagctgt tccaagattt gatgcagaaa catcccgggt tatctgatgc aacgaaattg       960
     cactacttaa cgcagtcgct gaaaggtaaa gcggagaatg ttctcagtga gcagatactc      1020
     aatgagaata acttccaagc ggcttggaat ctattagagg agcggttcga gaacaaaagg      1080
     acgatcatcg acatacacgt tggtggtctt ctcaatatga agaaaatgaa taaggagtgc      1140
     tcgtcggact tgaggcagct ggttgaggaa tgcagccgac atgtcgaggc tttggagttc      1200
     cacgagcaac ctatggaagg catgtccgag cagttggtgg tatcgttgtt gacatccaag      1260
     cttgataaag ccacactaag tctatgggaa agcaccatca agccgaagga actaccgggc      1320
     tacaaggcaa ccatacagtt tcttcagaat cgttgctttg tacttgaacg ttgcgaggca      1380
     agtacgtcac accgtagcaa tgagggaatg aagcaaaagc agatagtacc agctccgaaa      1440
     cagcacatta aggtgcatgc agcgctacaa acctacgaga gtgtgtgtgc attttgtgaa      1500
     gagtcccaca acgtcaacaa atgcaacaca ctgaagcaaa tgacgctgcc ggagaaaatt      1560
     gctgcggtga aagagaagca gctctgtttc aattgtttga aacgggggca ccgagtcaat      1620
     cagtgcaaat ctagattgtg cacggttgct ggatgtggga aaaagcacca tacgcaacta      1680
     catagcgaag tgcctgtcct gtcggagaaa cctgctgagg aaggaagtgt tcctgagtcg      1740
     aacaagacgg tgcccgctca atcagaaaca tcaaggtcca ctgtcacttg ttccagcacc      1800
     agttgcgaac gtgcacaacc atacaagaat gaggtgatac tgtcaacggc cgtggtttac      1860
     gtgaaggatg tccgtggatg ttaccgctcc tgtcgagcgt tacttgactc tggatcacaa      1920
     tcaaattttc tgtctgagca cttcgtcaaa atgcttcgcc tcaagctgga caacgtaaga      1980
     gttcctgtca ttgggatcaa tggtgagaaa ctgacagcta cacagcgaac aacggccgga      2040
     gtgaaatcca ctattggaga gtcgtcgtgg aatctggagt ttcttatagt gccacaggtt      2100
     acaggcattc ttccgatgca gaaaattgac gtgcgtcagt ggaaaatacc gcccaacatt      2160
     caattagcag attctcgctt caacatccca gcccgagtag acatgttgat aggagccgaa      2220
     ctcttttatg acctcctcat cactgagcgc cttaagctca acaacggaca accaatgctt      2280
     tggcggtcgg aactcggatg gatagtttgc ggttcctaca gaagcagtca aaggccggtg      2340
     gttgtcacaa cagcccactg ccaatccaca gaagttagct tggagaattc ggtgcaacgt      2400
     ttttgggagc aagaagaagt tccggaaacg ggaatgctat caacagaaaa ccaacagtgc      2460
     attgaacatt tcaacacaac tcatcggcga gaaaatggac gcttcgttgt tcggcttccc      2520
     ttccgaagca ccgtcaacca gctaggagat acaaggcatt tggcagagag acgcttcaaa      2580
     cagttggaga agaggtttgc aaaagacccg gaattgaaga aacagtacgt atcgttcatc      2640
     aacgaatacg tttcactaga gcactgccgc atcgtggacg aagatggcga ttctcgtgga      2700
     tgctatctcc cacatcatgc cattttaagg cctgccagtt caacgacaaa actccgcgtc      2760
     gtgttcgatg cctcggcacg ttccgacacg aacctttcct tgaacgatgt gctcatcaca      2820
     ggaccagtgg ttcaagatag tctgatggct atcgttcttc gatttcgacg gtataagtac      2880
     gtcttcacgg ccgacatcgt gaaaatgtac aggcaaatca gggttgatga gtctgattcg      2940
     ccatatcaga aaatactatg gagagaatgt cctcaagaac cgctggtaac ccttgaactt      3000
     atgacagtaa catatggcac ctcctgcgcg ccattctgcg caaccgcgtg cctcaaacag      3060
     ttggcgaacg atgaggaaac aaatttcccg atcgcatcga aggtagtccg caaggatttt      3120
     tatatggatg acgtactgtc aggagcggat gagctttcaa aggcactgga atgtcaagat      3180
     cagctaatcg ctttgttaca tcgtggagga tttaaattgc acaaatggtg tgcaaatgcg      3240
     ccagaactgc ttgaacgatt tccagtcacc gatcgtgagg tgcaagcgaa gattgaagat      3300
     cgaaccccca acgaagttat caagactctt ggcttgttgt gggaccccaa caacgatgtg      3360
     tttctgttca taacccagcc ccacgctgag atgcgtgaat acaacacgaa acgcactgtt      3420
     ctatcagata cagcgaaaat atttgatcct cttggactcc tgggaccggt gattgtcgtg      3480
     gctaaacttt tcattcaaga gctttggtcc cgcgacgtaa actgggatga acgactgacg      3540
     gcagatcagg aagacaggtg gaaaaggttc acgcaagaac tgcagagcat caacgaatta      3600
     ctaataccga ggagggctat cgctgaggat gcagtagcat tcgaaattca cggcttctcg      3660
     gatgccagtc agaaggcgta tggagcgtgt gtatatctaa ggagtatcaa ggcagacgga      3720
     acagccgaaa tgcatttgtt gagcagcaaa acacgtgtag caccattacc aaagaggcca      3780
     ggaagcaagc gaagtggcaa gccattcaca atacctaggg cagagctttg cggcgctcta      3840
     ttgttggcga gattggtggt agcagtaatc gatgccatgg acttggaggt caacgcggta      3900
     gtgctttggt gtgactcgca gattgttctc tgctggctta gcaagtctcc ggaaactctt      3960
     gaagtgttcg tcggaaacaa ggtgcgcgaa attaatcaac tcacgaacag tttcgagtgg      4020
     cggtacatca gtacaaagga aaacccggct gatttagcat ctcgtgggat aaatgcgccg      4080
     gcactgaaac aatcatccat ttggtggaac ggtccgtcaa tgctacacaa cgccgactac      4140
     aggtaccaac acctcgaatc cgttccgttc aacgaggaac agcttgagat acgtgaccca      4200
     gttctgacta acgtttcagt tctggtacag ccaagtgagt tattgaccag atacagtgac      4260
     ttcagacggc ttcagtgcgt tgtagcatac atatatcgct tcctaaacaa ctgcaggcag      4320
     aaaaacaaat ccctgaggag cataggattc ttgacagtta tcgagttacg ctccgcctcg      4380
     cagaaaatta tcaagctgac tcaacacgaa ggctttgccg acgagctacg aatgctgaaa      4440
     actgggcgaa cgaagaaaag caaattatta cccttggacc ctttcatcga tcgtgaaggc      4500
     ttgctcagag tcggtggtcg cttgaaacat gccagtgttc cgtttggaaa gaaacatcaa      4560
     ttgctattgc cacacagcca ccatgtgacg agaatgttga ttgcgactct gcataaggag      4620
     catctccata tcggccaaca aggattattg gccataattc gccaacgcta ttggccagta      4680
     cgagctaagt gcattattcg gcaaatagta aagaaatgcg tcaaatgctt cagaatgcat      4740
     cctcctgaag tggtacaatt catgggatca ctacctgact accgagtgaa tccgtctcca      4800
     gtcttctaca acaccggcat cgactatgcg gggccttttt tcgtccgtca aggtgttcgt      4860
     cgtgcaacga aggtgaaggt gtacgtggcc ttgtttattt gaatgagcac caaggctata      4920
     catctagagg ttgtgtcgga tttaactact gcagcgttct tgacggcttt gcatagattt      4980
     gttggtcggc gtgggtgtcc ggaaaaattg gtatccgaca acgcaaccaa cttccaaggg      5040
     gctcaatcag aactacagga gcttcaccga ttatttcaag cacagcaatt cagggaggaa      5100
     gttaaccact tttgtgcagc caaggagatt cagtggtctt tcataccgcc caggtcacct      5160
     aacttcggag gcatatggga ggccggagtt aaagcagcga aatctcactt gaaaattgtt      5220
     ctgtgcgagg cgtctttgaa ctacgaagaa atgagcacgt tattagttca gattgaagcg      5280
     attttaaact ccaggcctct aacgcaaaac tctactgatg ccaacgatct aactgctctg      5340
     actcccggtc actttatagt tggtcgtgaa ttaacagcag tgcccgaacc aagctatagt      5400
     aacgtccgag tatcatcctt gtccagatgg caacacctac agaagttgaa gcaggatttt      5460
     tggagtagat ggtctgccga gtacctgagc gagttacagc cgagaagcaa gtggtataag      5520
     ggcaagataa ccatcgtacc gggtatgctc gtagtcataa gggaagacaa tatgccaccc      5580
     caactgtggc accttggtcg tataacagaa gtaacaccag gtgctgatgg tttagtccgc      5640
     gtggttaaga tccgaaccgc taacggacaa atgagcagat ccatcagcaa aatagcgata      5700
     ttgccaatcg aagacaacgt ggttcatcgc tcaggagccg acgtgatttg acacggtgtg      5760
     tcaacggcgg gagga                                                       5775
//
ID   BEL-839_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-839_AA-I;
KW   BEL-839_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-173
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2044-2044 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 173 BP; 58 A; 37 C; 27 G; 51 T; 0 other;
     tgttttgaat ttcagagcac ccattacctt atacaccttg aaagaagata cattattatt        60
     tgcgaacttc caacactgtc atcaaaagag taataaaaca gcaacgtgtg aaaaaggacg       120
     tgtttttaat acggaagttt tcccccttgc cattttcacg cgtatccgaa aca              173
//
ID   BEL-83_AA-I repbase;    DNA;    INV; 5530 BP.
XX
AC   supercont1.342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-83_AA_;
KW   BEL-83_AA-LTR; BEL-83_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5530
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.342; Positions  586984  592513.
XX
CC   Positions [4535-5122] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..5530
FT                 /product="BEL-83_AA-I_1p"
FT                 /translation="MEKLFRERKSLDPRIKRVSEMVGKLKPETAEETEVQT
FT                 ELEVLGDIWASYSMVHKRILDASEDDELYEDAVQQQCRFESVYITLKNRLL
FT                 KVLKVIKNRDSSHEERSSSQNDALSQLAQQQAELLRLMSGRMSAGASTSTA
FT                 IAEGFPNLTPLSDLKLPRMNLPVFSGDYLEWQSFIDLFRSMVDQNPSLKDS
FT                 QKLYFLKTNLSGEAASLISHLKIEDVNYTPALQKLKSRYDKPLEIAHKHIE
FT                 RFLNQPALTSPSAQGLRSLHDVSDEVVLALQAMQREDRDTWLLFILIEKLD
FT                 HETKQLWYQKAADMSEANVTLQTFFAFIDSRSFALQSAQTIKQRASTTYKP
FT                 LMKPQYRGATTFVATNTFSNCSVCDKSPHPLYQCGKFIHMSADERMSAVNS
FT                 QRLCQNCLKGHAGEICRSGNCRKCGQLHHTLLHYAIMPTNVHQGPSTTYVV
FT                 SGDGSAAQSLISALDSNTTFDATNTLLATVSINVMDKQGRPHTCRAVLDSA
FT                 SQVSFISESFCKELGLDLLEADMDLEGISSTPAHVNKCAQIVLASRCTDYT
FT                 TTVPCMVLETITKSLPVKPANIDGWPIPKSINLADPLFHRPGRINLLLGIE
FT                 LFFQLLEPGKINLGPDDNFPMLQNTKLGWVVAGRYRDANIPSYATSPTCFL
FT                 ATSDEGLDQQLRRFWELEEYATPSPHLNEEEKRCEDHFYKHTIRDISGKFT
FT                 VRLPFLHSPTQLGDSRQMAERRLSHIERKLDRNPQLKHEYHSFLREYCELG
FT                 HMTLADGPAPIGSVYLPHHCVVKEASSTTKCRVVFDASAKTTSGKSLNDVL
FT                 MIGPVLQDSIVNILLRFRFPAIVVAGDIKQMYRMVDIHEADRDFQRILWRW
FT                 SSDRPIDEYRLNTVTYGMKSASYLATKCVQQLLESHRDQYPTTVERAEKGT
FT                 YVDDVLTGADTEEEAMLLRRQLTTIFTAGGFHLRKWASNSATVLNDIPDQD
FT                 REVKLPIELNDTRTIKALGIHWQPCSDEFQFSYSPTKISQPTKRNVLSQIA
FT                 SIFDPLGLLAPIIVKAKLAMQQLWELRVDWDETLPGEFVNNWLLFEQNLSD
FT                 LQYLQVPRRVIGVEGAHRVCLHGYSDASERAMGACVYIRAADKQGNTSSHL
FT                 LCAKSKTAPIGNGRTTLPRLELCAAVILSRLMANVMAAISLPINEVQAFSD
FT                 STVALAWIYGGASRWKTFVANRVAEITTHLPAINWRHIDTHTNPADLISRG
FT                 ALPDQIIGNPLWWHGPEWNGSNSTHQYPSISALDINQQRHVEREQRSVAVA
FT                 YLAIYENPFLDAMLARYYPNLQVLLRITARILRFSHREFRLTSRLTPPEID
FT                 CAMEIYVRHIQLQHYWKEINQLKQNRDVHRGSSLHQLKPFLDANDLLRVGG
FT                 RLQLWDLSYDMKHPILLPSHSRLTALILHHEHHEQLHCGPQSLLASIRRKF
FT                 WIVRGASAARKTYRTCVECVRTRSSPLHQLMGQLPADRLKPNPPFSITGID
FT                 YAGPINIISRRTRGVVPSKGYIALFVCFTTRAVHLEAVSDLSTSAFIAAFT
FT                 RFSSRYGLPNKVYSDNATNLRGAARKFREVYQAINTTITADDVADFLTNKS
FT                 IEWLFIPARSPHHGGLWEAGIKVAKGFLSKFDDNVRFTFEELSTVLAQVAA
FT                 CMNSRPITPLSDDPNEPQPLTPAHFLIGRSLNAVPEINQLERRVGSLNRWE
FT                 YVQRIGQEFRLRWQSEYVLSLQRMTKWQRSAPNVSVGDFVLLIADNEKPKQ
FT                 WPIGRILDVFPGQDGHVRVVSVKTANGVTRRDVRRIRRIPLEDDEYVPGRN
FT                 GAEIPRGNLVGGL"
XX
SQ   Sequence 5530 BP; 1515 A; 1399 C; 1275 G; 1341 T; 0 other;
     tatggtcctt cgagccgaat tcgcgaaagt ttcgtgaaaa gtgcagtatt gattaactag        60
     tgtcacgtgc attggccttg tagtccgact agtcctttct gtgctactgc caatccgtga       120
     tagttatcga gcaaaactct ctgcgggaag gaagtgccta gtgaactgtg aacccaagat       180
     ggagaaactt tttcgcgaac gtaaatctct ggatccgcgg atcaaacgtg tgtctgaaat       240
     ggtgggcaaa ttgaagccag aaacagcaga agagactgag gtgcaaacag aactagaagt       300
     gcttggtgat atatgggcct catatagcat ggtgcataaa agaattctgg acgccagcga       360
     ggacgatgag ttatatgagg atgcagtgca gcaacaatgt cggttcgaaa gtgtatatat       420
     taccctgaaa aaccgtttgc tgaaagtgtt gaaagtgata aagaatcgcg atagcagtca       480
     tgaagagcga tcgtcatccc aaaacgatgc attgagtcaa ctcgcacagc agcaagccga       540
     actgcttcga ttgatgtctg gaagaatgtc tgccggtgct agtacttcta ctgcaatagc       600
     tgagggtttc ccaaacctaa caccactgtc cgatctcaaa ttaccacgaa tgaatctgcc       660
     tgtttttagt ggagactatc tcgagtggca gtcattcatt gacttgtttc gaagcatggt       720
     tgatcagaat ccttcactaa aggatagtca aaaattatat tttctgaaaa caaacctctc       780
     tggtgaggca gcatcgctta tttcgcactt gaaaatcgag gacgtgaatt acactcctgc       840
     tctgcaaaag ttaaagtcgc gatacgacaa accactcgag atagcccaca aacacattga       900
     acgcttccta aaccagccag ctctgacgtc accatctgca caagggttac gatccctgca       960
     cgatgtctcc gatgaagttg ttctcgcact tcaagctatg cagagagaag atcgcgacac      1020
     ttggttactt ttcattctca tcgaaaaatt ggaccatgaa accaagcagc tgtggtacca      1080
     aaaggcggca gacatgtccg aagccaacgt cactctccaa acgttcttcg cgttcattga      1140
     ctctcgcagt tttgccttgc aatctgcaca aaccatcaaa caacgagctt ccactacgta      1200
     caaacctcta atgaagccgc aatatagagg agcaacaacg ttcgtcgcca ctaatacatt      1260
     ttcgaactgc agcgtttgtg ataaatctcc ccatccgctc tatcagtgcg gcaagttcat      1320
     tcatatgagc gctgatgaga gaatgagtgc tgttaactct cagaggctat gccaaaactg      1380
     cctgaaaggg catgcgggtg aaatatgcag gtcgggaaac tgtagaaaat gtggccaact      1440
     acaccacact ctgctacatt acgctattat gcctaccaac gttcatcaag gtccatcaac      1500
     aacgtatgtc gtatctggtg atggttcggc cgcccaatcc ctgatttcgg cccttgattc      1560
     caacaccact ttcgacgcca ccaatacgtt actcgccacc gtctccatca acgtcatgga      1620
     caagcaagga aggccccata cttgtcgagc ggttctagat tccgcttctc aagtaagctt      1680
     catcagtgaa agcttctgta aggagcttgg tctcgactta ttagaagcag acatggacct      1740
     cgaaggcatt tcatctactc cagcgcatgt aaacaaatgc gcacaaatcg tcttagcatc      1800
     ccgatgcaca gactacacta caacagttcc gtgtatggtg ctcgagacga tcaccaaatc      1860
     gctcccagtt aaaccggcga atattgacgg ctggcccatt cccaaatcta ttaatttggc      1920
     cgacccattg ttccatcgtc caggtagaat caacctactg cttggtatcg aactattctt      1980
     ccagcttctt gagccaggaa aaatcaatct tggtcccgac gacaattttc ccatgctgca      2040
     gaataccaaa ttggggtggg tggtagctgg tcgctatcgt gacgccaaca tcccgtcata      2100
     tgcaacttct ccaacgtgtt ttttggcgac ttccgatgaa ggccttgatc aacaattgcg      2160
     acgtttttgg gagctggaag aatatgctac accttcaccc cacctaaacg aagaggagaa      2220
     acggtgcgaa gatcacttct ataagcacac cattcgagac atctccggaa aatttaccgt      2280
     gcgattgcca tttctacatt ccccgactca actaggcgat tcgaggcaaa tggctgaaag      2340
     gcgattaagc catatcgagc gaaaactgga tcgaaaccca cagctaaagc atgaatacca      2400
     ctcttttctc cgtgagtact gtgaactggg acacatgaca ctcgctgatg gacccgcacc      2460
     tataggttcg gtttacctgc ctcatcattg tgtggtgaag gaagccagtt ccacaacgaa      2520
     atgtcgcgtc gtcttcgatg cctccgcaaa aaccaccagc ggaaaatctc taaacgatgt      2580
     gctcatgata ggtccagtac tgcaggactc aatagtcaac attcttttgc ggttccgatt      2640
     tccggcgatt gtggtggccg gtgacataaa acaaatgtac cgcatggtgg acattcacga      2700
     agccgatcgt gatttccaga ggattctttg gcggtggtcg agtgatcggc caatcgatga      2760
     atatcgacta aatacggtca cgtatggaat gaaaagcgca tcatatctcg ccacaaaatg      2820
     cgtgcagcag ctattagaat cgcatagaga tcaatatcca acgacggttg aaagggcaga      2880
     aaagggcact tatgtggacg atgtgctgac cggcgctgac accgaggaag aagccatgtt      2940
     attgcgacgg cagctgacaa caatatttac ggccggtggg ttccacctgc ggaagtgggc      3000
     ttcaaacagc gccacagtac tgaacgatat acctgaccag gacagagaag taaagctacc      3060
     aatcgagctc aacgacactc gcaccataaa ggccctcggc atccactggc agccgtgcag      3120
     cgacgagttc cagttctcct actcaccaac caagatctct cagcccacaa agcggaacgt      3180
     gttgtcgcaa atcgccagta ttttcgaccc gcttggactg ttggccccaa taattgtcaa      3240
     ggcaaaattg gcaatgcaac agttgtggga gctgagggtg gactgggatg aaactctccc      3300
     cggtgagttt gttaacaatt ggttgttgtt cgagcaaaat ctctccgatc tccaatactt      3360
     gcaggtacct cgccgagtga tcggtgttga aggcgcacac cgcgtctgtc tgcacggcta      3420
     cagtgatgca tccgagcgag caatgggtgc ctgcgtctat attcgcgcag cagataagca      3480
     aggcaataca tcatcgcatc tgttgtgtgc gaaatccaag acggcaccta tcggcaatgg      3540
     acgaacaaca ctaccacgat tagaactgtg tgcggcggtg atcttatcac gactcatggc      3600
     aaacgttatg gcagcaatct cacttcccat caacgaagtt caagcttttt cggattcaac      3660
     ggtggctctg gcatggatct acggtggagc atcgcgatgg aagacattcg ttgccaatcg      3720
     ggtggccgaa attactactc atctacctgc aattaattgg cggcacatcg acactcacac      3780
     caaccctgct gatctaatct cgcgcggtgc gctacccgat cagatcatcg gtaaccctct      3840
     ctggtggcac ggacccgagt ggaatggatc gaacagcact catcaatatc cctccatctc      3900
     cgctctcgac atcaatcaac agcgacatgt ggaaagagaa caacgttcgg tagcagtggc      3960
     gtatctagca atttatgaaa acccctttct tgatgcgatg cttgccagat actacccaaa      4020
     ccttcaagtt ttacttcgaa ttacggctcg aatattacgc ttctcgcacc gtgaatttag      4080
     gctgactagt cgtctgactc ctccagaaat cgattgcgcc atggaaatct acgtccggca      4140
     catccagctt cagcactatt ggaaagaaat taatcagcta aagcaaaacc gcgacgttca      4200
     tcgtggcagc tcgcttcatc agttgaaacc ttttctggat gcgaatgatc tgctcagggt      4260
     gggcggtagg ctgcaactat gggacctcag ctatgatatg aaacatccga ttctattgcc      4320
     tagtcactca cgtctcaccg cactgattct tcatcacgag caccacgaac aactacactg      4380
     tggaccacaa tcattgctcg cgtctatacg acgaaaattt tggattgtcc gtggagcaag      4440
     tgcagctcgc aagacatacc gaacttgcgt tgaatgtgtt cgaacgagat cgtcaccact      4500
     acatcagcta atgggccagc tccctgcaga tcggctaaag cctaatccac ccttttcgat      4560
     aaccggtatt gattatgccg gaccaatcaa catcattagc cggcgaacgc gaggtgttgt      4620
     acccagcaaa ggctacattg ctctatttgt ctgcttcact acacgcgcag tccatctcga      4680
     agcagtgtca gatctcagta cgtccgcatt tattgctgcc tttacccgct tcagtagccg      4740
     atatgggtta ccgaacaagg tttactcaga caacgcaact aatctccgag gagcagccag      4800
     gaagtttaga gaagtgtatc aagccatcaa tacaactatt actgctgatg atgtcgccga      4860
     tttcctcacc aacaaaagca ttgagtggct gttcatccca gcccgatcgc cacaccatgg      4920
     tggactttgg gaagcgggta taaaggtggc gaaaggtttt ttgagcaagt tcgatgataa      4980
     tgttcggttc actttcgaag agctcagcac agtcttggca caggtagcag cctgtatgaa      5040
     ctcacgaccg attactcctc tctccgacga tccaaatgaa cctcagccgc tcactccagc      5100
     acattttctc atcggacgtt ccctaaatgc tgtgccagag ataaatcagt tggaacgtcg      5160
     cgtcggatcc ttaaacaggt gggaatacgt acaacgcatc ggtcaagaat ttcgattgcg      5220
     gtggcaatcc gagtacgttt tatctctcca aagaatgaca aagtggcagc gttcagctcc      5280
     aaatgtgtcg gtcggtgatt ttgttctgtt gatcgcagat aacgaaaaac ctaaacaatg      5340
     gcccataggt cgtatactgg atgttttccc aggacaagat ggtcatgtca gggtggtttc      5400
     cgtcaaaact gccaacggtg ttacacgacg agatgtccgg cggattagga gaattccatt      5460
     ggaagacgat gaatacgttc cagggcgtaa tggagcagaa attccacgag gtaatttggt      5520
     gggcggctta                                                             5530
//
ID   BEL-83_AA-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   supercont1.342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-83_AA_;
KW   BEL-83_AA-I; BEL-83_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-302
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.342; Positions  586682  586983.
XX
SQ   Sequence 302 BP; 88 A; 69 C; 47 G; 98 T; 0 other;
     tgttgagacg aagtttagcg aagttaccct aattgatcgc ggtggctttc atccaaagga        60
     ttcctttcaa ttcccaaaaa tctctctctc tctccaatac cttacaatgt gacaatcgtc       120
     gcatctattg aattgtatac cgtaattgtc tccatatgaa atgatattta tataaaagga       180
     agaaatgaaa tacatcaagt tagttgaaat tgtaagccta aacccgtctc gcgtatcgtt       240
     atttccttcc gttcacattt ccgtaactca tcggcgcgct tttttcgtac ctcagaaaac       300
     ca                                                                      302
//
ID   BEL-840_AA-I repbase;    DNA;    INV; 6034 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-840_;
KW   BEL-840_AA-I; BEL-840_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6034
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6034
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2122-2122 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6034 BP; 1682 A; 1541 C; 1264 G; 1526 T; 21 other;
     aagtggtcct tcgaaccgga tctgccgtcg aactccggtc ttccgtcaca tctacgagag        60
     aatctaccac gtgcccggtt caggttaagg tgacccgccc atctccatcg aaacttctgg       120
     agtgccaacg cattgttaat tggatacaag gcaaatcgtt gcctgtaaaa aggtaattag       180
     cattcctatt ttgctattct gtccacgttt gagctacgcg gtctgcgctt tccagatccg       240
     gctcatctca cccacggatc tccatcgaca cttctggagt acaaccggat tgattattgt       300
     atacaaggca aatcgttgcc tgttagcagg taattagcat tccttctcga tactctgtcc       360
     acgtttgagc tacgcggtct gcgctttcta gatccagctc atctcatccc ttcacgatgt       420
     ccagcgaacg gcgaattaaa tctttgaaaa ctagacaaaa gagcctattg acgtcttttg       480
     gcctcatcaa gaccttcgtg gacaacttcc aagaagatac tgatacccgt gaaatatccg       540
     tccgattgga gcatctcgtc agcttatgga acgacttcaa cgccaatcaa gctgaactcg       600
     aaacgctcga cgagtctgcc atcgacgatc atttgaagga acgtgtcgaa ttcgaaacgt       660
     cctacttcaa agtgaaagga ttcctactct ctatgaataa agaagcgccg gtatctcccc       720
     gcacgtcttc atcttcttct ttcaccacgc acagccctgc tcagtcgtcg catgtaaggt       780
     tgcccgatat aaaactgcct aacttcgccg gaaacctcga ccaatggcta aatttccacg       840
     acctcttcgt ttccttagtc cattcgtcgc atgagctctc caatattcaa aaattttatt       900
     atctacggtc ttcgctatcc ggagaggctc tgaaactagt tcaaacgata gctattagtg       960
     ccaataacta tcaggttgcc tggaatcttc tgctcgacca ttatcaaaat cctctgcgac      1020
     tcaagcaatc ctacgtcgat gccctttttg aattcccatc aatcaagaag gaatcgtcca      1080
     cggagctgca ctccctagtg gaaaagtttg aggccaatgt taaaattcta acccagctag      1140
     gagagaaaac acaattttgg gacattcttc tgcttcgcat gctgagcatt cgtttagatt      1200
     cgaccacccg cagagactgg gaagaatatt catcgacgct aaatgccgtg accttcaaag      1260
     accttactac cttcattcat cgtagagtaa ctgttcttca gaccattgga aaaaccgccg      1320
     aaacatcgtg gccgattatc aacaagaagt cgggacagcg agtaatcgcc agtcatggag      1380
     caagtcaaac cagtcagcgt aaatgtgttt cttgctccga ccatcatcct ctctaccaat      1440
     gcggggtatt ttcgaaaatg agcgtagatg aaaaggagaa agaagtccgc cgtcatcaac      1500
     tatgccggaa ttgtttacgt aagggtcatc aagctaagga atgcccatct tcgagtacct      1560
     gtcgcaagtg taaaggtcat catcatactc agctgtgtct tggctctgct caattcaaca      1620
     ccaagttccc cgattcgtct cagcctaaag aaactggaac tcattcgagc gaacaaccgt      1680
     cagcgtcagt atccgcaacc ctgaatgatc aagccagcta cacttcaact ggtcaaggtc      1740
     gtaaaagcgt tctacttgct actgccatcg tcatagtagt ggacgacaat gggatcgaac      1800
     attctgcgag agctctgtta gattctggta gcgaatgctg ctttgccact gaatcgtttt      1860
     ctcagcttat caaagtccaa cgaaaaagaa tccaccttcc gatcgccggt ataggtcaat      1920
     ccgctacaga atcccgcttc aaattcattt cgacaatccg ctcacgtgta tctaactact      1980
     ctgccaaggt cgaaatatta gtcctaccaa aggttgcgat cgatttgcca tccaccacat      2040
     tcaacacgtc ttcttgggac attcctccag gaattcaatt agccgaccct gcgttttatc      2100
     aaccttcaag ggttgacctg attttaggcg ctgagatctt cttcgatcta ttcaaggtat      2160
     cgggcagagt tccactaggt ccaggtctcc cgatgctcgt caattcagtt ttcggttggg      2220
     tcgtgtcagg taggactact cacactccat cgaccacgcc tattatcgca aacgtcgctt      2280
     ctgttgccga tctacacgat ctcatgcaaa agttttggac gattgaggaa gatggatgcc      2340
     aatcttgtta ttctgtggag gaagcagctt gtgaagaaca cttcaggcga acgttcacac      2400
     gcactcccga aggtcgctat attgtcagct tgcctatcaa ggaggaaatt ctcgcaaacc      2460
     ttggagataa tcgtcgcaca gccattcgtc gcttccactt cctggagggg aagctcaccc      2520
     acaatgaaga gctttacgat caatatcgaa atttcatgga agagtacctg aaactaggcc      2580
     acatggaatt agtaaaggaa attcagcatc ctcatttacc tcgttaccat ctccctcatc      2640
     acgcggtgat aaaggaggac agtactacaa ctaaagtacg agtggtgttt gacgcatctt      2700
     gtccaacagc caacggacct tcattgaata ctgccttaat ggttggtcca attgtacaag      2760
     aggacttgcg gtcgatcacg atgcgatctc gaatccaccc agtccttata aatgctgaca      2820
     ttaaacagat gtatcgacaa attctaacgg atgataagag taacagtttg cagcatatag      2880
     tttggaggtc aacccctgat tccccgttgc agacatttga gctaaaaacc gttacgtacg      2940
     gcacagctag cgcgccattt cttgctacac gagtgcttca gcagctggca gatgatgaac      3000
     aaatcgattt ccctaaagca gccaacattc ttcgaaagga cttctatgtt gatgatttat      3060
     tctcaggagc agctacggta gaagaagcaa ttgaactgcg tacccaacta gaaatgttgc      3120
     tgaatcgagg tggctttgag ctgaggaagt gggcttctaa cgaaccatcc gcaattcaag      3180
     atgttcccat tgagaataga gcactgaaaa attacgtgga cttcgacaaa gagcagtgca      3240
     ttaaaacact tggattgcac tgggagccaa gcgccgatgt acttcgctac aaaatcgttc      3300
     taccttctac tagttcgagc aacgcaacac tcacgaaacg aatggcactg tcctacatag      3360
     cacgactatt tgatccgtta gggcttgtag gaccagtcat cacgacagca aaaattttta      3420
     tgcaaggaat ctggactctt atcgacactg atggcaaacc ttggagttgg gataaagagc      3480
     tacccccgtc attcaaaaca cgttggaata cctaccaatt gcagcttccc aaccttaatg      3540
     aacttcgtat atcacgctgc gtcatatttc catccccgac tacgttgcag attcacgtct      3600
     tctccgatgc atctgataat gcatatggcg catgtgtcta tcttcggtcc actaactccg      3660
     ccggcgaagt taaggtagct cttttaacgt ctaaatcaaa ggttgcccca ctcaagaagc      3720
     aaactatccc tcgactagaa ctatgtgggg cactcatagg agctcagctc tacgaaaagg      3780
     ttgtctcatc tcttcaactc aacgctgaaa cattcttctg ggtggactca accgtcgtac      3840
     tgtgctggct aaaatcttca ccttcagcat ggacaacatt tgtggcgaat cgagtgtcca      3900
     aaatccaact cgcaaccgaa aactgctcgt ggaatcacat tgctggggtt caaaacccag      3960
     cagacctaat ttcaaggggg accgcagcaa gcgacatagt gtctaacaaa ctttggtgga      4020
     acggacctga atggttgacc cgaaatatga tcgaatggcc aatagcacaa tcgaacaact      4080
     tccagtctaa tgaggctctt cacgaggcga agaggactac aattgctgct gttcctgccg      4140
     gggaagaatt gtccttcatc gatgaattcg tccagaaaca ctcaaactac tatcgaatgt      4200
     tacgtgtgac agcctactgt ttccgttttc ttcgaaaatg tcaacgaaaa tctgacgagc      4260
     aatcttctac taattatctc accacgggag aaattaaaac agcggagtca tctctaatct      4320
     ctttgattca gaagcagtat ttcagcaatg aatgggaaca attgcgacaa cgaaaagcaa      4380
     tatcgacaaa atctcgacta cggtggtttc atccttttat ggacgagcaa accgtactac      4440
     gaattggcgg ccgactcatc aattcgcaac taccgtatga cagcaaacac caaatcctcc      4500
     ttccatcatc tcatccaatc tcagggttac tgatccgaac tctacatttg cgacacctcc      4560
     atgcagctcc gcaacttctc ctagcgattc tacgtacccg gtattgggtc ataggggcca      4620
     gggacatggc caagaagatc gttcgcaact gcgtcatttg cttcagaaat cgccccaaat      4680
     tgatagaaca atttatggca gaattaccca gcgctagagt ctctgcagct agaccattta      4740
     ctacgacagg tgtggactac tgggaccaat ccaagtaaaa tcacaacatc gaagagcagc      4800
     tcccmaaaag gcgtatgttg cggtatttgt cagcaccaaa gccgtgcatt tggaattggt      4860
     ggcakaccwc acaacagcma aattcactca sgctttgcgc agatttgttt cgcgacgtgg      4920
     tctttgttcg gatatccata gcgataatgg tcggaatttt gttggcgcag caaacgaatt      4980
     gcgacgactg gtctcgagca aagaacacca cgctgcaatt gcacaggaat gcaatgacaa      5040
     tggaatwagw tggcacttca atccgccttc cgcttcccat ttcggcggcc tttgggaggc      5100
     agcaatctca tcagcwcaga agcacttcta tcgagttatc ggtacacaca ttttggcttt      5160
     cgacgacacc gagacacttc tcgctcaaat cgagtgctgc ctaaattcga ggccaataac      5220
     tccctwagcg acgatcctga cgacctcgag gtgcttactc ctggacactt cctcactggt      5280
     tctgctttga agagtgttcc ggataatgat tattccgata ccccgttcac tcgattgcat      5340
     aagtggcagc agactcagaa gattttccaa catttatggc agagatggca ccttgaatat      5400
     ttggctactc ttcagccacg aagtggctaa aaccakcgat tgacattgaa gtagggcgac      5460
     tggttatcat aaaggatgaa aactctccac cgatgagctg gcgtactgca cgtatcattg      5520
     acawgcaccc aggcgcggac ggaatagttc gggtggtcac attgcgaaca tcacaaggta      5580
     cttgtacgag gccagtatcg aaaatttgtt tgctccccac tttgacgtca tcaccagtca      5640
     acatttcgtc tgagagtkct gcgatccagt catcgaccaa ccaagggaaa taggaatcat      5700
     cacaatcagc taccactatt tckatcacgg acggatacct gcaggaaaaa agaaaataca      5760
     atgccctttt ttcaaaggga cwgggtgaga accagtccat taaattctac attcgcgaaa      5820
     mccgccaccg ggtcttttgt tttcgattat ttcccaatta gctcgttgat gctgcctgat      5880
     cttcaatcat ctgcaacgaa aatcccgaca actgacgttt acgaccaaaa caaacwmgac      5940
     cacgacakcg gatagaaaaa tcaacaagcc gagggacaac ccgcaggagw aaamcagttc      6000
     gaaktcagaa aggcgttttc tgaaggggcc agaa                                  6034
//
ID   BEL-840_AA-LTR repbase;    DNA;    INV; 531 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 25.07, Created)
DT   07-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-840_AA-I;
KW   BEL-840_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-531
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-531
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2139-2139 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 531 BP; 168 A; 99 C; 121 G; 143 T; 0 other;
     tgttcgtgta taacgaaagt gcttcatctg gacttgcgat ctgtgcttcg tttttcgtca        60
     aatggttgtg gcgattccct cgactccgac acttcggcga atgacaacaa agtgacaggc       120
     gacccttcgg aaatggaaag atggaggaaa atggatttcc gatcacccct cggatataaa       180
     aggccttcgg agacgtcatg ggacctcttt gattgctccg gccagtgtat atacatggaa       240
     gtgtcaaaag tgttgctaga ttattgaagt taaaaatagt tagtaattat tattagatta       300
     gtgaactgca tgaaataaag tgaacttgaa catggcatga attaaattaa acgtaaaatg       360
     aactgaaaat taaaactagt gaattattaa acaaaacgaa gagtagttag tgcgtgagtg       420
     aaagacatta tcccgaattg tgtgctgaaa gcgacaaggt cccatcctga ccaggtccac       480
     tggaacagag gttcatcaac catcgtccac agctcgcctt tgttatcgac a                531
//
ID   BEL-841_AA-I repbase;    DNA;    INV; 6342 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-841_;
KW   BEL-841_AA-I; BEL-841_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6342
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6342
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2123-2123 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6342 BP; 1928 A; 1412 C; 1470 G; 1532 T; 0 other;
     atttaaaaac ttcgtttacg tccgttggaa agatgatcaa ccgaacaccc atcaaaacca        60
     ggagtgcagc tgctgttcga gcgaaccaaa ttacgggtag cgatactaga agcgattcca       120
     attgtcactg caagatatgt tccgcaccgg ataatacatc tatggttcgg tgcattgttg       180
     gaaaagaaat ctaccacgtg aagtgcgcgg gattgactga cgaagccatg gaccacgact       240
     ggatctgtcc ggcttgccgg gacaaccaag gagctaagga aacgacaaca gctacctcgc       300
     actgtgagcc gctagtaagt acgcaatcag gttttattgc catgcagacc caaccatcag       360
     cgcctttagc tacaatggca ccgttaaaca cttccaatct cgttaccact atacctgcca       420
     tggcccccac attgatggtg tcgccgaatt cattgtttcc gcctatattg ccagaaacat       480
     tcgtacccca tacctcgtta atgccgccta atccatacat accgtctaat tattcaatgc       540
     caccctatcc aacaatgcaa ttgcaatatg caatgccttc gctgccgcct agtcgccact       600
     caaatctaca cgtttcattt tcgagcaata aaaactacga tcagtgtaac accgtaccat       660
     ccagcttccg tcatccaatt ccatctgtac tcgacgcagt tccagcaagt tccagcaacg       720
     ccgctgtaca gcacgaaggg agaattccag agtcagcgtt cgtcaagcat cctccgagca       780
     acaagcggca aggtttagag gataatcaga gccagtattc ccgagcaagt tcccaacaat       840
     cagcaaaaca gaggcagttg aagctggagt tgcatattct ggaagaagag agaaaattgc       900
     aagaaaagga agaagcaagc aggcgcgaat atcttcgtaa gcgacacgag ttaataaaag       960
     aaatcgttaa cgatgaagca tcaaacattg atacggatcc agagttacca gaaactagag      1020
     tgtcaaactg gctgcatgaa acgagtcaag aaaggccttc gaaactacat aacaccacaa      1080
     atgtcccagt cattcatagg gaaggatcat cgcgatttga cagaaccgtt caacattccg      1140
     aaggaaccca agccaacgtc acgtcgggag aacaaattca cgaaagagaa catgtcaacg      1200
     attcagcatt acgaaattcg atgcaaaacg tgactgcgga tctccagcac atgcaagtcc      1260
     gtaacaacga tcaacgttca gcaattgatc aatggttgac aagcatcaat ttcacccctc      1320
     cccgaagctc ttctccaaga accatggatt gtgatgctac tggtgaattc agtttgacgc      1380
     gtaaccagat atccgctcgt caagcggtgt cacgggatct tccaccattt agcggtacac      1440
     cagaagaatg gccgttattc ttttctacat tcaacacaac gactaagatg tgtggatata      1500
     cccaggaaga gaatttgcta cgtttgcaga aatgtttgaa ggggaaagca tacgaggcga      1560
     ttaaatgcag attaatgcat ccttcgaatg tacccggtat catttctact ttgaagatgt      1620
     tgtacggtaa tccggaagta attgttcaga acgtaatttc caagatgtac gcaattcaac      1680
     caccaaaagc tgaaaaatta gaatccctga ttgagttttc actagcagta caaaatcttt      1740
     gcgccactat agaggcttgt gagctagacg aatattcata caacgtggca ctcctgtacg      1800
     agttggtaaa taagctccct tcggctttca aagtggattg ggctaagtat cgacggacct      1860
     tggtaaatgt caaccttcgt aagttcgcgg attggttaca ggagctagcg gaaacactgt      1920
     gtccaatagc gaatcttcag agtaacgagc agaaagtaac ccgcggaaat aaaaacttgt      1980
     cgtacatcca tacccacagc gaagacttcg aaaaagcacc tggtaaatca acgaaactgg      2040
     gtggaatgga cttgaaaacc acacaatgtg tagtctgtaa aggtagttgt tcgaatttgg      2100
     agaaatgtca acgtttcgct gaatttgggt acaattccaa gtgggctgta gtgaaggagt      2160
     ttgatctatg cagaaaatgt ctacgcaagc acaaaggatc ctgtaggtat caacaaacat      2220
     gtgggaaaaa cggttgttct ttcaagcacc atcaactgtt acacaactca cgccgtgacg      2280
     aagccaatag ttctaaagag gagaatacag cagaaaaacg cgccaaatac ttctcttcgt      2340
     gaatgcaacg ctcatcaaca actgaaatcc actgtactct tccgggtggt acccgtcata      2400
     atccacgggc ctgataagtc aatcaaaacc ttcgcgtttc ttgacgatgg atcgtcactc      2460
     accttgatag aagcgtcttt ggcacaggag ctaaatttga aggggaaacc cgagccattg      2520
     tgcttaaagt ggaccggaaa caatcgacga agggaggatg actcacttaa tttgaatgtt      2580
     gaaatttctg ggacgagaaa gtcacaccaa gcctacagcg cgatagttca cacggttgct      2640
     aacctaaatt tgtttcacca gactgtagat gcccaaaaat tgaaaaccag gtttcctcat      2700
     ttgcggggta tgcctttcga atcgtaccac gatgctcagc cgagaatctt aattgggagc      2760
     gataatccca atctaatttt ccaagtcaag ggacgagaag gcaagttcca tgaaccaata      2820
     gcatcgaaga ctcgtcttgg ttggagtgtc tatggtggag gcacagaaaa cgattccttt      2880
     gttgcacatc acagtgttca gatatgtcct tgtaacgaag gttcccatgc ggtgttacaa      2940
     caaatggtta gtgactactt caaccttgac tcccttggaa tatataaatc gggaaagccg      3000
     ttagaatcta atgaagataa gcgggcgcgt gagatattac aaacaacagt aacccagaca      3060
     gaaagtggcc actacaaggt gagtcttctg tggaaattcg acgagttccg tttgcctaat      3120
     agcaaaccca cagctttgca acgtctccat tgcttggaag ccaggatgaa aaaacagcca      3180
     acgttagccg aaatcctaca cgcaaaaatt gaggattaca agcaaaaagg atacattcgc      3240
     aaacttacca aagatgagat gctagctaaa caggatcgtg tatggtatct accactgttt      3300
     ccggttttca accccaataa acctggaaag gtaagaatag tttgggacgc ggcagccaaa      3360
     actaacggga tttcactcaa ttctctgcta cttaaaggac cagattttct cacgccctta      3420
     gattacgtac tctatcgatt ccgggaattt cgagtgggtc tcagtggtga cgtaagagaa      3480
     atgtatttac aactacttat gtcaaaggag gatcagcaat gccttagagt tttgtggcgc      3540
     gatgagcctt ctaaggagcc aagcatctat gtaacacagg taatgccttt cggtacatgt      3600
     tgttcgccta gctgcgcaca atatgtaaag aaccttaatg ccagcaagtt cgaaggtcaa      3660
     tatccagcag ctgctcaagc tatcaccaag caacattatg ttgacgacat gctagtaagc      3720
     gttgagacgg agcaagaggc cataaaacta gctaaagatg tgaaatacgt tcacgctcaa      3780
     gctggtttcg acatgcgcaa ctggatttca aattcaaccg cagttgttga agcaatggaa      3840
     gagaaaacta aacaggaaaa gagcatgaac atcggagctg aactcggaac cgaaaaggtg      3900
     ttaggaatgt ggtggtgtac ggccactgat acgtttactt acaaactctc gtccaaacac      3960
     gatcctgcat tgctggaggg gttgcgcaag cctacgaaaa gggaagttct gagaacgctt      4020
     atggcaacgt tcgaccctct cggattgata tccaatatcc tgatttatct caagatactc      4080
     tttcaagaaa tatgtcgtac cgggattgaa tgggacgaaa taatacctga caaccttcat      4140
     gaaaagtggg aacgatggct agagatctta ccgaaagttc aagaagttcg cataccgcgt      4200
     tgctatcgag taaatactga acttgggcca cgaactaacg ttcagctgca tacgtttgtc      4260
     gatgctagca tgtcaggata ttctgctgta gtttatctcc gttttgaaca aggtagtaga      4320
     gttgaatgtg caatagttgg tgctaaaacc cgagtgtctc cattgaagct tgtctccatt      4380
     ccgagattgg aactgcaagc cgcagtaatt ggagttaggt tggcagacac cgttatgaaa      4440
     acgctttcat tcccgatcaa ccagcgtttc ttttggagcg attcccgtga cgtattgtgt      4500
     tggattcggg cagatcatcg acgatattca cagtttgtcg cttttcgcgt tagtgagata      4560
     ctagaatcga caactgtaag tgaatggggt cacaagggat cgaaggaaaa tgttgctgac      4620
     gacgctacta agtggcatgg agaacccgac ttatctgaag acagcagatg gttcaaaggg      4680
     ccaagttttt tgtgggaaag cagtgacaat tggccattga atctattcca tgaagatagg      4740
     acgacggaag agctacgtgc gcacatctct tatcatcatg tggagcctga aagtgtaata      4800
     actgttcata attactccag ctggaaacgt ctccaaagaa tagcggctac gatgatgaga      4860
     gctgttcaca atttcggctg taaatcaaag aaaaatttgc gaattatcgg cccgcttaca      4920
     tctaatgaaa tccagcaggg cgtagtgtat ctgtatcgaa gggcccaaac agaggttttt      4980
     gccgatgaaa tcagtacgtt gatggcaaat gacgctaggg ggaccatacc gaaatccagc      5040
     tcaatttata gcttcaaccc ctatatggac gagcaaaaag tcctcagaat gcagggtcga      5100
     atcaacgcgt gcgaatacgt ttcgatggac gccaaaaacc caatcattct accgaaagat      5160
     catcacatca catggcttat agtacaatat tatcatgagc ggtatcatca ccagaatcac      5220
     agcactgcca tcaatgagat acgtcagaca ttcaaaattc cgaagatcag aagactgttt      5280
     cagcgtgtca gagctaagtg tcagaagtgt cgaatcaaca aggcaactcc ctgtcctcct      5340
     atgatggggg agcttcctat ggctcggctg gcggcatttg ctagaccgtt ttcctacgta      5400
     ggcatagact actttgggcc tatgtctgtg gtggtcggcc gtcggataga aaagcgatgg      5460
     ggtgtgttgt tgacatgcct gacgatgcgt gcggtgcaca ttgaaattgc ttattcactc      5520
     aatgcagatt cgtgtgtgat ggcaatacgg aattttatgg caaggcgagg cgtaccgata      5580
     caaatttaca gtgatcgggg aactaatttt acggcggcaa agaaagaatc ggcggcagcg      5640
     aacgaggagt tgatcgttgc actgaaggag ctgaaccaag ataaggttgt cgcagaaatc      5700
     gttagtacag acacagattg gacattcttg cccccagcgt ccccgcatat gggtggagca      5760
     tgggaacggc tcatacagac ggtgaaacgt aatcttcagg ctatgaaacc aggacgaaac      5820
     ccatcagacg aagttctccg caatacctta atggaaattg agaacatcgt caattcacat      5880
     ccattgacat acgttccgat agaagattca gaagcgccag tccttactcc aaaccatttt      5940
     cttttgggtt catcgagtgg tttgaagcct ttgaccgtat tcgatgatag cgcagtggtt      6000
     ctgcgacgat cgtgctgtat gtcgcaagtt gaggcaaatg ttttctggca aagatggtta      6060
     cgagattatc taccggatat aacaaggcga acaaagtggt tctacgaggt gaagccgatt      6120
     gaattcaacg acattgtggt gatagtgcac ccggaattac cacgtaattg ttggccaaaa      6180
     ggcagaatta tctccgtcaa tactagcaag gatggacaag tgcgttccgc gacagtccaa      6240
     accaaaacag ggatatacga gcgtccggct actaaattag cggttctaga tgttcgacgc      6300
     gatgaatcgg taagccagga acctggccta cccccggggg ac                         6342
//
ID   BEL-841_AA-LTR repbase;    DNA;    INV; 817 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-841_AA-I;
KW   BEL-841_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-817
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-817
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2140-2140 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 817 BP; 265 A; 151 C; 150 G; 251 T; 0 other;
     tgttacgacc cctcggtcgg cgcatctcac gacactgaaa cttcgagtat catgttggtc        60
     agctgtggta aatatgaccc gtcaaaccga cagggcatgg gacaaagcgg aacgtcaatc       120
     accatgactg gcagtcgtag aaagcaacac cattagaaga aagatcgagt gaattgatgc       180
     ctcgctgctg tcctttacaa tttaaagtct cggtgtatcc ttatttttat atcagctatt       240
     agtatcaaaa ctaggagcag cttacttaat aaggttgtgt gaatttgtta taaacagcca       300
     cgaatttgag tcctaatcat atttctttta ggataacctg taatacagaa aaaatatttc       360
     aattaggcca caagtcgcat ctagaaagct ataaacttca ttatattgta ttatctacag       420
     tttgcggtaa ggcaaactaa ctagttatat tgtcaattac gtaacaataa gatacaattt       480
     gttatgcagg gtacgtcgtt tgctgatgtg ctacccgaga actcattcta gcctttgaac       540
     ctcgtaaaga gcggtaagga caaatgaatt tacattgaaa agaatagcta agaaaactta       600
     aaggctcttt acaggatctc ccttcattag tttcgcctag agtgtagaaa caacaatttt       660
     tgttcagaat taaagcacta aacgtaagtt gaattcaaga tttaataatg ctacttctct       720
     aatgaatttc ataacttata ggaagttttt aatatacctt tgccgttatt aaaaaacttg       780
     gaaatcgtct ttattctgag ttggctgctc gccaaca                                817
//
ID   BEL-842_AA-I repbase;    DNA;    INV; 5807 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-842_;
KW   BEL-842_AA-I; BEL-842_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5807
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5807
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
CC   A sampled rebuilt sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..5778
FT                 /product="BEL-842_AA-I_1p"
FT                 /translation="MATAMRSLKQLVAKRANLLQSAQLIREFDERFEASQQ
FT                 DEIPFRLERLDKLWEELEIVDMELEALQDEDAAVAESRAKFQNLYYRLKGS
FT                 LSKKLPAPASNPPAPVPNAPVPPASSAGVRLPELKIPEFDGNPEEWAGFHD
FT                 LFKSMIHDNYQLTNIQKLHYLRASLKGDAARIISSLSISAYSYTVAWKLIT
FT                 DRYEDKHLLIKQHISALFLVSPLRSESASGLSDLADEFEKHVKILDTLETK
FT                 AQHWDSVLVELLFSRMDATSQKQWENTRDKTNRPLYDDLIRFIHEHSRTLQ
FT                 SLQISQSVCTPAMEAKPIKSRLLSNYSASEQVLQCTACQQAHYLFQCEVFR
FT                 NLSPHQRFELVKRSNLCINCLKASHQARNCNSGCCKYCQKRHHTMLHIPSS
FT                 ASLITTGAPSHNQSFEHNIVPVQETLPNLSYSPSVSSHGDPDVTSVNRSFS
FT                 QSSTSVFAPRLPSSGLLTPPSTSCQTVAPTIPGENTVILFTALVNICDNHG
FT                 NRQVARALLDSGSQSSFISESLCQRLSLNRTKINMPVNGIGQAIVNVRYAV
FT                 SVNISSRFSVQQFLLECLVLPKLTVNLPTKTVDIKAWKIPKHLPLADPQFY
FT                 QCHGIDLIIGAELFPFIILPEQIPFDDRLPPLQKTTFGYVFSGKVSTPSTG
FT                 PITCLISTLDDLDTQVKRFWEVENFDVGKCLTAEEQQCEAHFVSTHSRNSE
FT                 GRYVVRLPIREDLIQSIGDTWSIAARRFSAVERRFRSDVTLHQSYAAFMEE
FT                 YERLGHMEEVLTRVALPQYFLPHHAVHRPDSSTTKIRVVFDGSSKSSNHVS
FT                 MNDLLLTGPTVQPPMLCIVVNARFHRFVMKADVEKMFRQIIVHPDDRNLQQ
FT                 IVWRRNECEPLKIYRLNTVTYGTSCAPYLSTRVLNQLADDEGDEFPLAASF
FT                 VKEDFYVDDVLTGANSIEALAAASTQLDGLLKRGGFSLRKWSSNHPGILEH
FT                 LPDELKDNQASLEIDRSASIKTLGLLWFPKEDQFGIKVPDLPNDLQVTKRT
FT                 VLSEISKCFDPLGLIGPVVASAKMFIQRLWQENLSWDEEIPEILQLWWLSF
FT                 RASISALRDLRIPRWVFGENTACYELHCFVDASSKGYGACIYAVSVDSSKV
FT                 HYSNLLISKSRVAPVSGYSTPRLELCAAVLGSQLADNIRRTTKFDSKITFW
FT                 SDSSIVLHWINSPPASWKIFVSNRIAKIQKLSTGFQWRHVPTLENPADRLS
FT                 RGVQPADIKNDMLWWHGPSYLRKEVEFWPHLIIPLSLAEAQEQSNEQRQTV
FT                 ALVCVTFDDSLINNFSQLSHLLRVASHCLRFANNCRLPIHARNVGCLTPVE
FT                 YDKTLKSLIRVVQGTSFQHELRFLQRKSHETLSLRKADFKTPLKDIDVWID
FT                 ESGLLRLNSRLAQSRGSFDSRFPIILPADHHLSKLIAISIHHQTLHAGPTQ
FT                 LLATIRQRFWPIRGRDLARRTVHHCLTCVRFQPPASIQFMAPLPTSRVTAA
FT                 KVFENTGLDYCGPFFVRPLAGKGASVKVWVAVYVCFAVKAVVLDIVAGLST
FT                 ESCVNSLRRFVSRVGRIRTIHCDNSTTFVGAFREVKEMRQVLVDQLESTAW
FT                 KTECLDRGIEFRFIPPRAPHFGGLWEAAVKAFKRLFLKTIGAAPHHYDNMR
FT                 TAVAQAECIMNSRPLTPLSNDPKDLSVLTPGHFLVGESIYHLPDPDLSNVP
FT                 INRLNHFQATQRSVTDLWKRWSKEYIGLLHQRPAKWRRPPTEFNIGTMVLV
FT                 KEADVPSKQWPLGRVVAIYPGSDNIVRVVDVRTQHGIRRRATSELCVLPID
FT                 VHQTSPLTNQCESSENS"
XX
SQ   Sequence 5807 BP; 1501 A; 1415 C; 1300 G; 1591 T; 0 other;
     tattttggtg ccgaaacccg ggactaattc cggctagtgt tattcttcgg ttgaaataaa        60
     tcgtcacgga cattttttcg acaatctatt gttcaatttg ccacaccgtg tggggcatcg       120
     tttgcccagt gcaataaaca caattaactt attgttcatc tccacgctgc tttgtctgga       180
     ggataatcac gttggcgtag tgaatagtgt gctgctgtgt ggttgaattt gagtggttgc       240
     cgttgagttc ctgatctgta gttaccagca tccttcgccg agcgagtcca tccacgatca       300
     acgatttgtg caattctcga agcttcttgc cctaaccacg ccgtacggta gcgatcgatc       360
     aggttaagta cgatcggagc aggtgagtgt cttctattct attgttgggt aacaatggca       420
     accgccatgc ggagcctaaa gcagttagtt gccaaacgag cgaacttgct tcaatcagcg       480
     caactaatcc gggaatttga tgaacgcttc gaagcttctc aacaagatga aattcctttc       540
     cgactggaac gtttggataa attatgggag gagctggaaa ttgtagacat ggagcttgag       600
     gcacttcaag atgaagatgc cgcagttgct gaatcacgtg caaagtttca gaatttatac       660
     tatcgtttga aaggatcact atcaaaaaag cttccagctc ctgccagcaa tccacctgct       720
     cccgtaccga acgctccagt tcctcccgct tcctctgctg gtgtacgctt accagagttg       780
     aaaattcccg agttcgatgg gaaccccgaa gagtgggctg ggttccatga tttgttcaaa       840
     tccatgatcc atgataatta tcagttgacc aacattcaga agctccatta tctgcgagct       900
     tcattgaagg gagacgctgc tcgcattatc tcgtccttat caatttcggc ttacagttac       960
     actgttgcgt ggaaactgat taccgatcgc tacgaggaca aacatttgct aattaaacag      1020
     cacatttctg cgctattttt ggtttccccg cttcgaagtg agtctgcttc cggtctttcg      1080
     gatttagcag acgagtttga gaaacacgtt aagatattgg acacacttga aaccaaggcg      1140
     caacattggg attctgtgtt ggtggagctc ctgttcagtc gtatggatgc tacctcacag      1200
     aaacagtggg aaaatactcg agacaaaaca aataggccgc tgtatgacga ccttattagg      1260
     ttcattcatg aacactcgcg caccttgcag tctctacaga tctcccaatc tgtttgcaca      1320
     ccggcaatgg aggcaaagcc aatcaagtcg cgtcttttgt cgaattattc agcttctgaa      1380
     caagtattgc aatgtacagc ttgccaacag gcacactact tgtttcaatg cgaagttttc      1440
     cgtaatctat ctccgcatca acgatttgaa ttggttaaac gaagcaattt atgcattaac      1500
     tgcctcaaag catctcacca agctagaaac tgtaacagtg gatgttgcaa gtattgtcag      1560
     aaaagacacc acactatgct ccacattccg tcgtccgcct ccttgataac gactggagct      1620
     ccatcacaca accagtcctt tgaacataat attgttcctg tacaagaaac acttcccaat      1680
     ctgtcgtatt ctccttcggt ctcgtcacat ggtgacccgg atgtcacttc ggtcaatcgt      1740
     tcgttctcgc agtcgtcgac gtcggttttt gcgccccgcc tgccttcgtc gggactactc      1800
     acacctccgt ccacctcctg tcaaaccgtt gctccaacca ttcctggtga aaataccgta      1860
     attttattta ccgctttagt gaatatctgt gataatcacg ggaatcgcca agtggcacgt      1920
     gcgcttttgg atagtggctc acagtcaagt ttcatttccg agtcattgtg tcagcgcctt      1980
     tcgttgaatc gaacgaagat caacatgcct gtgaatggga tcggtcaagc aatcgttaac      2040
     gtacgctatg ctgtatcggt gaatatctct tcccgcttca gtgtccaaca gtttcttttg      2100
     gaatgtttgg tgttaccgaa gctgacggtg aatcttccaa cgaagacagt ggacatcaag      2160
     gcgtggaaaa ttcccaaaca tctcccatta gctgacccac agttctatca gtgtcacggc      2220
     atagatttaa ttatcggagc cgaactcttc cccttcatca tcctacccga gcagattcca      2280
     ttcgacgatc gattgcctcc acttcaaaaa accacctttg gttatgtttt ctctggaaag      2340
     gtttccactc cttcgaccgg accaattacc tgcctgatct ccaccttgga tgatctagac      2400
     acccaagtga aacggttctg ggaggttgaa aactttgatg ttggcaaatg cctaaccgcc      2460
     gaggaacaac aatgtgaagc acactttgta tctacacaca gccgcaacag cgaagggagg      2520
     tacgttgtgc gactaccgat tcgggaggat ttgattcagt cgattggaga cacttggagt      2580
     attgcagctc gtcgattttc cgccgtcgag agacgttttc gttccgatgt tacactacat      2640
     cagagctatg cagctttcat ggaggaatac gaacggctgg gtcatatgga ggaggtgctg      2700
     actcgcgtcg cgttgcccca gtattttctg cctcatcacg cagtgcatcg tcctgattcg      2760
     tctactacga aaattagagt agtcttcgac ggctcttcca aaagcagtaa tcatgtctca      2820
     atgaatgatc ttctgctaac gggacctacg gtgcaaccac caatgctttg catcgtagtc      2880
     aacgctcgct tccatcgatt tgtaatgaag gccgatgtgg aaaaaatgtt ccggcagatc      2940
     atagtgcatc ctgatgaccg gaatttgcaa cagattgtct ggcgaaggaa cgaatgtgaa      3000
     ccgctgaaga tctaccgttt aaacaccgtt acatatggca cttcttgcgc tccatatcta      3060
     tcaactcgtg tcctaaacca gcttgcggac gacgaaggtg atgagtttcc tttggcagct      3120
     tcttttgtca aagaggattt ttatgttgac gatgttctca ctggagccaa cagcatcgaa      3180
     gctcttgctg ccgctagcac ccagctagat ggacttctga aaagaggagg gttttcgctt      3240
     agaaagtgga gctctaatca tccaggtatt ctggaacatc ttccagacga gcttaaagac      3300
     aatcaggctt cgcttgaaat tgaccggtca gcatcaatta aaacattagg actgttatgg      3360
     tttccgaaag aggaccaatt tggaattaag gttcctgatc ttcctaatga tttgcaagta      3420
     acaaaacgca ctgtattgtc agagatttcc aaatgtttcg acccattagg cctcatcggc      3480
     cctgtagtag ccagtgcaaa aatgttcatt cagcgattgt ggcaggaaaa tttaagctgg      3540
     gacgaagaga ttccagagat tctgcagtta tggtggctgt ccttccgagc ttctataagt      3600
     gccttacgag atcttcgaat acctcgatgg gtgttcggag agaacacagc atgctatgaa      3660
     ctacattgtt tcgtcgacgc ttcttccaag ggttatggag catgtatcta cgcagtgtct      3720
     gttgactctt ccaaagttca ttacagtaac ttgctcatat ctaaatcacg tgtcgctcct      3780
     gtaagcggct attctactcc gcggctagaa ctctgcgcag cggtgctggg gagtcagtta      3840
     gctgacaaca ttcgtcgtac aacgaagttt gactcaaaaa tcactttctg gtcggattca      3900
     tccatcgtac ttcactggat aaattcccca ccagcatcat ggaagatatt cgtctccaac      3960
     aggatagcaa agatacagaa actctcgact ggattccagt ggcgacatgt tccaacccta      4020
     gaaaatcccg ctgatcgctt atctagaggt gtacaaccag ctgacatcaa aaacgatatg      4080
     ctttggtggc atgggccatc atatttgcgg aaagaagtag aattttggcc ccatctgatt      4140
     attcctttat ctcttgccga agctcaagag cagtcaaatg aacagcggca gactgttgca      4200
     ctcgtttgtg ttacttttga tgattccctt atcaacaatt tctcacagct ttcgcatctt      4260
     ctcagggtcg cttcacactg tctacgcttt gcaaacaact gtaggttgcc tatacatgct      4320
     cgcaacgttg gttgtttgac cccagtagaa tacgacaaaa ccttgaaatc tcttatacga      4380
     gtcgttcaag gtacaagctt ccagcatgaa ctccgttttc tgcaaaggaa gagtcacgaa      4440
     actttgtcac ttcggaaggc tgatttcaag acaccattga aggatatcga tgtgtggata      4500
     gacgagagtg gactgctcag attaaacagt aggctggcac aatcacgtgg ttctttcgac      4560
     agtcgattcc caataatact tccagcggac caccatctgt cgaagttgat agccatttcc      4620
     attcaccatc aaaccttaca tgcagggccg actcaactgc tggcaacaat tcggcagcgc      4680
     ttctggccca tacgtggcag ggatctcgcg agaaggacag tgcatcactg tttgacatgc      4740
     gttcgtttcc aacctccagc aagtatccag ttcatggcac cactccctac gagtcgtgta      4800
     acagctgcaa aggttttcga aaatacgggg ctagattact gcgggccgtt tttcgttcga      4860
     ccattggcag gcaaaggcgc gtcggtaaaa gtttgggtcg cagtgtacgt gtgtttcgcc      4920
     gttaaagccg tagtactaga tattgtcgcc ggtttatcga cagaatcgtg cgtgaactcg      4980
     ttaagacgct ttgtgagtcg tgtcggacgg attcgtacaa tacactgtga caatagcact      5040
     acattcgtcg gcgcgtttcg cgaagttaag gagatgcgac aagttttggt agatcagtta      5100
     gaaagcaccg cctggaagac agaatgtttg gatagaggca tcgaattccg cttcattcca      5160
     ccacgtgcac cacattttgg aggcctgtgg gaagcagcag taaaggcttt caaacgactc      5220
     ttcctcaaga ccatcggtgc tgctccacat cactatgata acatgcgcac agcagtagca      5280
     caagcagaat gtataatgaa ctctagacca ttgacgccgc tttcgaacga ccctaaggat      5340
     ctctccgtcc tgacacctgg gcactttcta gtaggagagt ccatttatca tctacctgac      5400
     ccagatcttt ccaatgttcc gattaatcgt ctcaatcatt tccaggccac gcaacgttcg      5460
     gtcaccgatt tgtggaaacg ttggtccaaa gaatatattg gacttcttca tcaacgacca      5520
     gccaagtggc gtaggccacc tactgagttc aacatcggta ccatggtctt agtaaaagaa      5580
     gcggacgttc catcaaaaca atggccactt gggagagtcg ttgccatcta tcctggaagc      5640
     gacaatatcg tacgcgtagt agatgtgcgt acacaacatg gcatccgtcg tcgagcaaca      5700
     tctgaacttt gtgtccttcc catcgacgtc catcaaactt cgccgttgac taatcagtgt      5760
     gaatcaagtg aaaattcttg aagaatactc ttcaacgggg ccctgga                    5807
//
ID   BEL-842_AA-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-842_AA-I;
KW   BEL-842_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-281
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-281
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2141-2141 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 281 BP; 76 A; 79 C; 48 G; 78 T; 0 other;
     tgttgcggcg cagaactcct gcggtatata tcattatacg caccaccaca cataaccatt        60
     ccagtctaat tatcgctctt tactctgaac acaaattatt ataataaagc attcagtctt       120
     gttcaagcaa ccatacaagg tggaacgttg ttctgtatcc gtccgaaagg ttcatctaaa       180
     acgtgctagt ttctccttcg cgccagtccg cagtcgttat cgcatcaatc ctccaagcct       240
     gtcgtcgtag aaccggccag ttccggtcaa caatcatcac a                           281
//
ID   BEL-843_AA-I repbase;    DNA;    INV; 7601 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-843_;
KW   BEL-843_AA-I; BEL-843_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7601
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7601
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           744..6101
FT                 /product="BEL-843_AA-I_1p"
FT                 /translation="MADLRALVKSERRVLNTLDGLENFVRKSDPAKDEAQI
FT                 AVRLESLEAICKEFYAIRERTELLTDEAAEIEDEKDIREREKANLLALSEF
FT                 EERYFRLKASLTSKRIPPPATSTIIGNGPPGERFESSFSKVKLPEICLPSF
FT                 DGKIKEWITFRDSFSSLIHENKQLTDMDRFSYLKSALSREALQEIGSIELS
FT                 AANYSVAWEALESRYENKKLIVKAHLDALFAVEALKRESYDGLNNLISVFE
FT                 KNLQMLQKIGEDTTAWSTIMAYMVYSRLDSVTLRQWETYHNSKQVPMYQNL
FT                 ITFLRSHCAVLQSIAPVSTTPSNSEFRASKSSVCHTTVKWSKKCPFCGETW
FT                 HSAFVCGEFQRLQIQERCEAVFKAKLCRNCLSPGHWARNCEKGVCHHCQQK
FT                 HHTLLHGAPNRSSVPQSQSNPPTQSRQQPQSKSTNTSILTQDAIDPSNPTP
FT                 SNSQGYSTQLSATNTATCTTQTHIALPVTPTHNILLSTALVRVQDSNGSIM
FT                 LARALLDSCSQHCLMTKEFSKRMNFHATTSYLSVQGIGSSSSTSTRLVSAL
FT                 VSPRLKDISSFSQEMHFHVLPRLTVSLPTISCDISRWDLPESSILADPRFH
FT                 EPGPVDVIIGAEYYMDLLRTEQRKATEDGPTLQNTEFGWIVSGKVPDHSSS
FT                 RPQSFALVCSTIDLQEQLTKFWDLETCRSHSTQSLEESACEEHFKCTTIRD
FT                 NSGKFIVTLPKKENLINRIGFSEATAVKRMMGMERRFAANPELKRMYVDSI
FT                 SEYLALGHMKEVVDEAAEADIRRYFLPHHAVLKPDSTTTKLRVVFDASCQT
FT                 STGISLNDALMVGPVVQDDLSSICLRFRTHRIAVNADIAKMYRMIQVQPQD
FT                 YRLQSIKWRCEPSEPLRTYELTTVTYGTSSAPYLATKCLQRLAEDGESSHP
FT                 VASKVLKKDFYVDDMLTGVDTVEEGQQLVKEIIDLSDSAGFTLRKWNSNNR
FT                 DLLECVPENLRDERTILTLDSSEATIKTLGLAWEPGADVFCFTFPSFNWAT
FT                 TVTKRVVVSDVSRLFDPLGLVGPVIIQAKIFIQELWRQSSEWDEPLSPELQ
FT                 AQWQEYRRNLAGLGNLTVPRWIGTGGHIVNTELHGFCDASNKAYGACFYIR
FT                 TISETGEVCVRLLTAKSRVAPLDNLKKGNKRLSTPRLELSSALLLAHIVEK
FT                 VVSSLGIAVRCFFWTDSTIVKCWLSSSPSRWKQFVANRVSEIQHITKDGIW
FT                 NHVAGLENPADIISRGMTPAQLQYESLWFSGPYWLRSDEHNWPSAPQISED
FT                 DFDPVDLEVQSGSAAYPTIQPSNIFSLRSSFSELLRLTAWMLRFRHNSQLV
FT                 NRSMRRHGSITKVELEEAAKTLVRISQRESFPQELADLTDGRAVRESSKIL
FT                 TLNPQLKDGILCVGGRLRHASIATQRKHPYILDHRHPFAYIVVAHYHRNLL
FT                 HGGQQVVISSVRERFWPTCVRNLVRKVLHECVPCFRARPKIHDQLMADLPL
FT                 ERVTPCTPFQRVGVDYCGPFQVAYPHRRSRAIKIFVAVYVCLVTKAVHLEL
FT                 ASDLSAQGFIATLKRFSSRRGKPEIIMCDNGRNFVGARRQLNELCRLFHDQ
FT                 QFQSSVSRHANEERIDFRFIPARSPNFGGLWESTVKSFKLLFKRTIGLRTL
FT                 LYDEMNTFLTQAEAVLNSRPLTPLSNDPDDFEALTPGHFLIQRPLTAIPEP
FT                 DLDGIPENRLSAFQKTQRYTQQLWKKWSMLYLSDLQNRTKWTVKRNNIAVG
FT                 TMVILKDEEQPPLKWLLGRVTDVHAGADGNVRVVTVMTKDGSYRRAISKIC
FT                 VLPIRDNNAQSNGEN"
XX
SQ   Sequence 7601 BP; 2121 A; 1757 C; 1814 G; 1909 T; 0 other;
     tttggtcctt cgagccggat tgcatatcgg acactagtgt ggttcttctg gggaatccgg        60
     caatctactg tgtggtgcaa aactgtttgg cggattaaaa gcagtaacga acaaacgaac       120
     tataagtgcg caaaagccgt cagtagtaaa cctgcacggc tcggaagatt tccagtgaaa       180
     attcttgtcg gtgctcagat ccctgcagcg gaaatcctga ccaagattct gtggcatctg       240
     gctttgtgtg tctcggcgcc atcgcgagaa ggaagttgat tgttcggaga ggaggacatt       300
     tttgcacaag tgcaaggcgc catcgtcaag gctgaaggag ctcaacagaa aacggacatc       360
     gtaaaatttg ggaagtataa agtgcatgta tggtggaatt gcatgtgggc taatcggtgg       420
     caataaattg atatacagtg catgcgagtt gcttctcaat taagaacgta gccctgaggt       480
     gtccgctagt tgctttctgt cttggtgtcc gctggatttg ttggttgctt tgtcctctct       540
     ggttgaactc ccttcgctgc tgtctaaata gtcgtagagc agtcaaaccg tctcgcgagg       600
     tcgcgataat tgtggaacgt tgagtcgatc gcgagtgatt ctggtgcatg tgggggtgtt       660
     gtgcagtgta cgccaaagca attaattgcg cttctcgcag ttagttacaa ttcagtgcag       720
     tgtaagtgat tcaagtatta gcaatggccg accttcgcgc ccttgttaag agtgagcgac       780
     gtgtgctgaa tacgttggat ggtctcgaaa attttgtgag gaaatctgac cctgctaagg       840
     atgaagcaca aattgcagtg cggttggaat ccctggaggc aatatgcaag gaattctacg       900
     caatccgtga acgtacagag ctgttgaccg acgaagccgc tgaaattgaa gacgaaaagg       960
     atatacgaga gcgtgagaag gccaacttgc tggcactgag tgagttcgag gagcgatatt      1020
     tccgcttaaa agccagcttg acttctaagc gcattcctcc accagcaacc tctacaataa      1080
     tcggaaatgg tcctccaggc gaacggtttg aatcgtcttt ctcgaaggtg aaactgcctg      1140
     agatttgcct tccgtcgttc gatgggaaga tcaaggagtg gatcacattt cgggacagtt      1200
     ttagcagctt gatccacgag aataaacagt taaccgatat ggacaggttt agctatctga      1260
     agtcggcctt atctagagaa gctttgcagg agatcgggtc aatagaactt tctgcagcaa      1320
     actacagtgt agcgtgggaa gcactggaat ctcgatacga gaataaaaaa ctaatagtga      1380
     aagcacacct tgatgcgctg tttgctgtag aagcattgaa acgtgagagt tatgacggct      1440
     tgaataatct cattagcgtc ttcgagaaaa atcttcaaat gctacagaag atcggtgaag      1500
     ataccactgc gtggagtacg atcatggcgt acatggtata ttcccggctt gattctgtta      1560
     cgctacggca gtgggaaacg taccataatt cgaaacaagt gccaatgtat caaaatttga      1620
     tcactttcct acgcagccat tgtgcagtac tgcaatccat cgcacctgtt agtactacgc      1680
     caagcaattc cgagttccgt gcgtcgaaat cctctgtatg tcataccacc gtgaagtggt      1740
     cgaaaaaatg cccgttttgt ggagaaacgt ggcattcagc ctttgtatgt ggcgaattcc      1800
     agcggttgca aattcaggag cgatgtgaag ctgtgttcaa ggcgaaattg tgccgaaatt      1860
     gtctaagccc aggccattgg gcccgaaact gcgaaaaggg cgtctgtcat cactgccagc      1920
     agaaacatca cactcttctg catggagcac caaacagatc ctccgttcca caatcgcagt      1980
     caaaccctcc gactcaaagc agacaacaac cacaatccaa atcaaccaac acaagcatac      2040
     tgacacagga cgctatcgat ccgagcaatc ctacaccgtc caactcgcaa ggatatagca      2100
     ctcaactatc agccacaaac acagccacat gtaccactca gacacacatt gcactcccag      2160
     ttacacccac acacaatatt ttgctatcta ccgccctcgt aagagtgcaa gattccaatg      2220
     gaagtattat gttggcacga gcgttgctgg actcgtgctc ccagcactgt ttgatgacca      2280
     aagaattctc caaaagaatg aattttcacg caacaacatc atacctctca gtccaaggga      2340
     ttggttcgtc tagtagtact tcgacgagac tcgttagtgc attggtcagc cctaggctga      2400
     aagacatttc atcgttttcg caagaaatgc acttccacgt tttaccacga ttgactgtat      2460
     cgttaccaac gataagttgt gatattagcc ggtgggacct tcccgaatca tcaatactcg      2520
     ccgatcctcg tttccacgag ccaggacctg tcgacgttat aattggagcg gaatactaca      2580
     tggatctttt gcgaacagaa caacgtaagg cgaccgaaga tggacctact ctccagaaca      2640
     ccgagtttgg ttggattgtg tccggcaagg ttcctgatca ttcttccagt agaccacaat      2700
     cgtttgctct tgtttgctcc acgatcgatc ttcaggagca gctcaccaaa ttctgggatt      2760
     tggagacctg tcgaagtcac agcacacagt cgttggaaga gtcagcatgt gaagagcatt      2820
     tcaaatgcac aaccatcagg gataactctg gtaaatttat agtaaccctg ccaaaaaagg      2880
     agaacttgat caacaggata ggattttctg aagccaccgc tgtcaagcgc atgatgggga      2940
     tggaacgacg tttcgctgca aatccagagt tgaagaggat gtacgtcgat tccatcagtg      3000
     aatatctcgc acttgggcac atgaaggaag ttgtagatga agccgcagaa gcagacatca      3060
     ggaggtactt cttgccacat cacgctgttc tcaagccgga cagtactacc acaaagctgc      3120
     gagtggtgtt tgatgcttct tgtcaaacgt caactggaat ttccctgaat gatgctctga      3180
     tggtcggccc agtcgttcag gatgatctgt caagtatatg cttgcgattc cgaacacacc      3240
     ggattgctgt gaatgcagac attgccaaga tgtaccggat gattcaagtc caaccacaag      3300
     attaccgatt gcaaagcatt aagtggagat gtgagccatc tgaacctctt cgtacatacg      3360
     agttgaccac cgtgacatac ggcacttcgt ctgcaccata tctggctaca aaatgtctgc      3420
     agcgcttagc agaagacggt gaatcttctc accccgttgc atcaaaggtt ctcaagaagg      3480
     atttctacgt tgatgacatg cttactggag ttgacacggt tgaggaaggt caacaattgg      3540
     tgaaggagat catcgatctg tcagattcag caggtttcac gctgcggaag tggaattcta      3600
     ataatagaga tcttctcgaa tgcgttccgg agaatttgag agatgaacga actatcctca      3660
     cattagattc atccgaagcc actatcaaaa ccttaggttt agcttgggaa ccgggtgcag      3720
     atgtcttttg tttcacattc ccttcgttta attgggcaac aacagtaacg aagcgtgttg      3780
     tagtatccga cgtttctcgt ctgtttgatc cactgggttt ggttggacct gtcatcatcc      3840
     aggccaagat tttcatccag gaattgtgga gacagagcag cgagtgggat gagcccttaa      3900
     gtccggaatt acaagcacaa tggcaagagt acagacgaaa tttagcaggg ctaggaaacc      3960
     taactgttcc tcgttggata ggaactggcg gtcatatcgt caataccgag cttcacggtt      4020
     tctgtgatgc gtcaaataaa gcctacggtg catgtttcta tatacgaacg atctccgaaa      4080
     cgggggaggt gtgtgtaagg ctgttgacgg caaaatcaag agtcgcccca ctggataacc      4140
     tgaagaaagg aaataaacgg ctttccaccc cacgattgga gctgtcatct gcgttgttgc      4200
     tagcccatat agttgagaag gtcgtgagca gtcttggcat agctgtaagg tgtttctttt      4260
     ggacggattc taccatcgtc aaatgttggc tttcgtcttc tccatcaaga tggaagcagt      4320
     tcgtagcgaa tagagtttcg gagattcagc acatcacaaa ggatggtatc tggaaccatg      4380
     ttgctggact agagaatcca gcggacatta tttctcgagg aatgactccc gcacagctac      4440
     agtatgaatc actttggttc agtggtccat attggctgag atcagatgaa cacaactggc      4500
     cttcagcccc gcagataagc gaagatgatt ttgatccggt ggatcttgaa gtacaaagcg      4560
     ggtcagcagc atatcctacg attcaaccaa gcaatatctt cagccttcga tcctcgttta      4620
     gcgagctcct gcgactcact gcatggatgc tcagattccg tcacaattcg caactggtga      4680
     atcgtagcat gcggcgccat ggttctatta ctaaagtcga gcttgaagaa gcagcaaaga      4740
     cattggttcg tatttcgcaa agagaaagct ttccgcagga gttagcagac ctgacggacg      4800
     gcagagcggt tagagaatcg tcgaagattc taactcttaa tccgcaacta aaagatggaa      4860
     tattgtgcgt tggtggccgg cttcgtcacg cttcaattgc aacgcaacgc aaacatccat      4920
     atattcttga tcaccgtcat ccattcgcat acatcgtcgt cgctcactat caccggaatc      4980
     tgttgcatgg cgggcagcag gtagtcattt cgtctgtacg agagcgtttc tggccgacat      5040
     gtgttcgaaa tcttgttcgg aaggtgctcc atgaatgtgt gccatgtttc agagcaaggc      5100
     caaaaatcca cgatcagctt atggctgacc ttcctcttga gagagtcact ccttgtacac      5160
     ccttccagcg agtaggagtt gactactgtg gtccgttcca ggtagcctat ccacatcgac      5220
     gtagtcgtgc tataaagatc ttcgtcgcag tttacgtctg tttagtaacg aaggctgtcc      5280
     atttggagct agcatcggac ttgtctgctc aaggttttat tgctacgttg aagcggtttt      5340
     cttcccggcg tggcaagccg gaaataataa tgtgcgataa tggaagaaac ttcgtcggag      5400
     cgagacgtca attaaacgaa ctgtgccggc tattccacga tcagcagttt cagtcatcag      5460
     tatccaggca cgcaaatgag gagcggatag attttcgctt cattccagca cgctcgccga      5520
     acttcggtgg actttgggag tcaacagtca aatcgttcaa gctgttgttc aaacgaacca      5580
     tcggcttgcg tacgctcctt tatgacgaga tgaatacgtt tttgactcag gctgaggcag      5640
     ttttaaattc gagaccgtta acaccgctca gtaatgatcc ggacgatttt gaagctttaa      5700
     ctcctggtca ctttctgatt cagcgccccc taacggccat tcctgaaccc gatttggatg      5760
     gaattccaga aaaccgcctc tcagctttcc aaaagacgca gcggtatacg cagcagttgt      5820
     ggaagaagtg gtccatgctg tacttgtcag acctccaaaa tcgaacgaaa tggactgtca      5880
     aacggaacaa tattgcggta ggaaccatgg tgatcctgaa ggacgaagaa caacctcctc      5940
     tgaagtggct actagggcgt gtgacagatg ttcacgctgg agcagacgga aatgtgcggg      6000
     tcgtaaccgt catgaccaaa gatggcagct accgcagagc aatctcaaaa atctgcgtac      6060
     taccaattcg tgacaataat gctcaatcaa atggggaaaa ctagatttcc tccaccggcg      6120
     gaggtcgaga ttatcggcct ccgcactcca gttaagtttt gtatacatta tatttttcca      6180
     aaaagtaacc cgctcatttt tcccagtcac gatcgcccat ggtctctgtc acccggagca      6240
     gtcttcagtc gattgcatat ccaatcacgc cttgcccctg tcagttgagg taatctgtat      6300
     agtttcggtg gtggtcaaca gattgcatgt atagtccacg catgaataaa atcatcagcg      6360
     tccaaagcgt tgagcgctta aatagatccg tattacattt ggaaccacgt ttgactattt      6420
     tgaggtcact agctaatttg aaaaacaatc gaaagaagca aacgatcatc ggagtagaac      6480
     aaatggtaat catcgaatga agtcagacat gaacgtagca tcacctaacc cgacaatgag      6540
     aggaattacg atgccaaccg gcattcgcgg gggccgcggt ggcctccgtt tcagggaagt      6600
     cgttttttgt ttagattata aagataaaaa agcaccctct catttgttcc agcgcgtata      6660
     tagacattcc atcaccgaag aacattacac ccaaaaccac gagatcaata ccgttgagta      6720
     acatcggaaa cataagacta aacgtatcgt gcatccgctt aatatcagct taacatcttc      6780
     gttgcaacaa tcatcagcac ccgaattgcc aatcagtacg agattgagag ggatatcggt      6840
     gcaatccagc acaagcggag gccacggagg cctccgttcc agggaattat attgcagtta      6900
     acattaacag aagacatcag tcccgtggcc agcacgccgt tcgagagcaa cggtccaatg      6960
     cttctggtgg gcgaaagtcc atcatccagg aaatccctag tgtagtgctg gtgccatgca      7020
     gcacatacgg aggccaagga ggcctccggt tcaggcaagt cgtttttgta tatggttaaa      7080
     aaggtataaa agcacccttt catatgtttc agcgacttgg cctgctcggt tgtcattagc      7140
     gtactcgacc gactcatcat ctgcacttta tgaagtcctt cagcagatgc aaattgaaaa      7200
     aacatccatc atcagcagtt ccaaacatcg ccaagaagag atttcaccaa cgttgagggc      7260
     agcaccgata atgatcatcg ttgaggccca actccagcta caatcaaata cgaaatctcc      7320
     atccacgtca aacaccaaaa atcagcaatc cagtgatatt gtcagcgcga tcgaacgaac      7380
     ttttttagtt tatgagcagt cctcccaaac taggcaaaat gagtgcggtt cttagcaaaa      7440
     caaaccacga atataggtca aggttgttga cgaccgaccc agtaacagtc agtagaatag      7500
     ggtaatcaaa acaaaacgga catgatagat gtaaaattgt tcatacacaa gcaagagtga      7560
     aacagtaaat tggaatcaaa aattccaagg cggccggcta a                          7601
//
ID   BEL-843_AA-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-843_AA-I;
KW   BEL-843_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-331
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-331
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2142-2142 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 331 BP; 90 A; 59 C; 80 G; 102 T; 0 other;
     tgttagagcg agaagtcaaa ttaatcgact ataaaaattg gcatgggcaa ccctagtttg        60
     ttcatactct ccgttggacc gcttgtatgt ggttaggtac aactagccct cgatcgatcg       120
     agtatatata ttgcatgagt cagctgtgtt atgtactttg tagaagttga tgtagtttag       180
     ttgaaataaa ccgccgcgga gtaaacacgt cccgtccgtt tctcaataaa taagtatagt       240
     ttgtgttcgc gttagaataa agtgtttgat tcgaccgtga taaacgattt ttagttagtg       300
     tccgaaggaa ttcccgcggc gggcgcgaac a                                      331
//
ID   BEL-844_AA-I repbase;    DNA;    INV; 7702 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-844_;
KW   BEL-844_AA-I; BEL-844_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7702
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7702
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2150-2150 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           739..6087
FT                 /product="BEL-844_AA-I_1p"
FT                 /translation="MADLRTLAKSERRLMNTLDGLENFVRKYDPAKDEIQI
FT                 SVRLESLETICKEFYTIRERMELLTDEAADLEDDKDVQEREEANLQALSDF
FT                 EERYFRLKASLTSKRALPPTTSAIIENGQLGDRSESSFSKVKLPEIRLPSF
FT                 EGKLKEWVSFRDSFCSLIHENRQLTDIDRFSYLKSALSGEALLEIESVELS
FT                 SANYSVAWKALESRYENKKLIVKAHLDALFAVEGLKRESYDGLNNLISTFE
FT                 KNLQMLQKIGEDTAAWSTILAYMVYSRLDPATLRQWETHHNSKQVPAYQNL
FT                 ITFLRSHCAVLQSIAPLNISPSNPDNRSSKSSVCHTTVKFSKKCPFCGETW
FT                 HSAFVCGEFQRLQVSERCEAVFKARLCRNCLSPGHWARNCEKGVCHHCQQK
FT                 HHTLLHGAQTRSSVPQSQSNPPTQIRQQSQSQSINPSQLIQDVSNHTPPNS
FT                 QGQSTQSLATNTATSTTQTHIALPVTPTHNILLSTALVRVQDRHGSSMLAR
FT                 ALLDSCSQHCLMTKEFASRMNFRTSSSYLSVQGIGSSTSTSTRLVSAVVSP
FT                 RLEDISSFSHEMHFHVLPRLTVSLPTASCDISGWNLPESTFLADPRFHEPG
FT                 PVDVIIGAEYYMDLLRTEQRKATENGPTLQNTDFGWIVSGKIHNHPSNGSQ
FT                 SLALVCSTIDLQEQLTKFWDLENCRSHSTHSLEESACEEHFNRTTIRDQSG
FT                 RFIVTLPKKENVINRIGFSEAIAIKRMMGMERRFATNPELKVMYVDFISEY
FT                 LALGHMKEVEEENVEAGVIRYYLPHHAVLKPDSSTTKLRVVFDASCQTSTG
FT                 VSLNDALMVGPVVQDDLSSICLRFRTHRIAVNADIAKMYRMIRVQPQDYPL
FT                 QSIKWRHEPSEPLRTYELTTVTYGTSSAPYLATKCLQRLSEDGVSSYPVAS
FT                 KVIKKDFYVDDMLTGIDTVEEGQQLVKEIIDLSDSAGFTLRKWNSNSRELL
FT                 QVVPEKLRDERTVLTLDSSEATIKTLGLVWEPGSDVFRFTFPSFNWAATVT
FT                 KRVVVSDVSRLFDPLGLVGPVIIQAKIFIQELWRQSSEWDEPLSPELQAQW
FT                 KEYRRNLTGLENLTVPRWVGTGGHIVTTELHGFCDASNKAYGACFYIRTIS
FT                 ETGEVCVRLLTAKSRVAPLDNLRKGNKRLSTPRLELSSALLLAHLLEKVIS
FT                 SIGIAMRCFFWTDSTIVKCWLSSSPSRWKQFVANRVSEIQHITRDGVWNHV
FT                 AGLENPADIISRGMTPAQLQYESLWFSGPYWLRXDDCNWPSAPPISEDDFD
FT                 PIDLEAQSVSAAFPTIQPSDIFSLRSSFSDLQRLTAWMLRFRHNSQLANRN
FT                 MRRHGILTKIELDEALKTLIRLSQRESFPQEIADLTSSGEVRESSKIVALN
FT                 PQLKDGMLCVGGRLRHASIATSRKHPYILDHRHPFAYVVVVHYHLKXLHAG
FT                 QQLIISSIRECFWPTCVRNLVRKVLHECVPCFRARPKIQDQIMADLPPERV
FT                 IPCPPFQRVGVDYCGPFNVAYLHRRNRPVKIFIAVYICLVTKAVHLELASD
FT                 LSAQGFIATLKRFTSRRGKPQIIMCDNGRNFVGARRQLDELCRLFNDQNFQ
FT                 SSVSRQANEEQIEFRFIPARSPNFGGLWESAVKSFKLLFKRTIGLRTLLFD
FT                 EMSTILTQLEAVLNSRPLTPLSNDPDDFEALTPGHFLIQRPLTAIPEPDLD
FT                 GIPENRLSAFQKAQRYTQLLWKKWSKLYLSDLHNRTKWTVRRNNITIGTMV
FT                 VLKDEEQPPLKWLLGRVTEVHAGDDGNVRVVTVTTKDGSYRRAISKICILP
FT                 IRDNPVPTNGEM"
XX
SQ   Sequence 7702 BP; 2118 A; 1820 C; 1805 G; 1956 T; 3 other;
     tttggtcctt cgagccggat tctgtgcaac tcggacactt aagaaccttc ctgtgtggtg        60
     cgagctgctg gagtggtgca gcaatttaga tagcaaggaa cttaaagtgc gcgaaagccg       120
     tcggcaatta atttgcacgg ctcggaagat tgccgttcag tgcagtttcc cttcggtgtt       180
     tggattccgg agcgtcagtg aaggccatcg gtacgactgc aagcaattgg cgcactttcg       240
     ttcagcgttc ctgctttgtg ttgcggcgcc atcgagaaga ggacattttg gacgacaatc       300
     aacaaggatc caaggcgcca tcgtgaagat tggagctgtt cagcagaaga cagacatctt       360
     gggaattggg aagtatttgg tgcatgttgg gtggaatttt gcatgtggct aataagtggc       420
     aattacaata cattgatcaa ggtgcatgcg agttgcttct tattttggag cttagccctg       480
     aggtgtccgc tagttgcttt tggtctcggc gttcgctgga tttgttgatt gtttggtctt       540
     ctttggttga taccccctcg ctgctgtcta aatcgtcgta gaacagtcaa tctgtctcgc       600
     gaggtcgcga taattgtgga acgtcgagtt gattgcgcgt ttcgatgcta gtggaagtgc       660
     tgtgcagtgt gtgatttaac gattagttgc gcttctcgca gttaatcgca gttcagtgaa       720
     gtgatcaaat ctctagcaat ggctgatctt cgcacccttg ctaaaagtga gcgacgtctg       780
     atgaatacgt tggatggatt ggagaatttc gtaaggaagt atgaccccgc caaggacgaa       840
     attcaaattt cggtgcgtct ggaatccttg gagacgattt gtaaggagtt ttacactatt       900
     cgtgaacgaa tggagttgtt gaccgacgaa gccgctgatt tggaggacga caaggatgtt       960
     caagagcgtg aggaggctaa tttacaggcg ttgagtgact tcgaggagcg atatttccgt      1020
     ctcaaggcca gtttaacttc gaagcgagca ttaccaccaa caacctcggc gattatcgaa      1080
     aacggtcaac taggcgaccg atccgaatcg tcgttttcga aagttaaatt gcccgagatt      1140
     cgccttccgt cgtttgaagg aaagttaaaa gagtgggtat catttcgaga cagcttttgc      1200
     agcttgattc acgagaatag acagctgact gatatagaca ggttcagcta cttgaagtcc      1260
     gccttatctg gagaggcctt gctggaaatc gagtcagtag agctctcgtc agcaaactac      1320
     agtgtagcgt ggaaggcctt agaatcccgt tacgagaata aaaagttgat agtaaaggcc      1380
     caccttgatg cactgttcgc tgtagaagga ttaaagcgtg aaagctacga tggcttaaat      1440
     aatcttatta gcacatttga gaaaaatctg cagatgttac agaagatcgg tgaagatacc      1500
     gccgcatgga gtacaatact ggcttatatg gtatattctc ggctggatcc tgctacactg      1560
     cggcagtggg aaacgcacca taattcaaaa caggttcctg cgtatcaaaa tttgatcacc      1620
     ttcctacgca gtcattgtgc agtactgcaa tccatcgcac ctctgaacat ttcgccaagc      1680
     aatcccgata accgttcatc gaagtcttca gtctgtcata ccaccgtaaa attttcgaag      1740
     aaatgtccgt tctgtggcga aacgtggcat tctgcttttg tgtgcggcga attccagcga      1800
     ttgcaagttt cggagcgatg tgaggcggtt ttcaaggcaa ggttgtgccg aaattgtctc      1860
     agccctggtc attgggcccg aaattgcgag aaaggtgttt gtcatcattg ccaacagaaa      1920
     caccacacgc ttctgcatgg agcacaaaca agatcctccg ttccacaatc gcagtcaaac      1980
     cctccgacgc aaatcaggca acagtcacaa tcccagtcaa taaacccgag ccaactgata      2040
     caagacgtaa gcaatcatac accccctaac tcgcaaggac aaagcactca gtcattagct      2100
     acaaacacag ccacatccac cactcaaaca cacattgcac tcccagttac tcccactcac      2160
     aacattttgc tgtctaccgc cctagtaaga gtgcaagatc gccatggaag tagcatgctg      2220
     gcacgagcgc tcttggactc gtgctctcag cactgcctga tgacgaaaga gtttgccagt      2280
     agaatgaatt tccgtacatc gtcatcatac ctctctgttc aagggattgg ctcatcgact      2340
     agcacgtcga caagactcgt tagtgcagtg gtcagcccaa gactggaaga tatttcgtct      2400
     ttctcacacg aaatgcactt ccacgttctc ccacgattaa ctgtatcgct accgacggcg      2460
     agttgtgaca tcagtggatg gaaccttccc gaatcaacat tccttgctga tcctcgattt      2520
     cacgaaccag gtcctgtaga tgtcattatc ggagcagagt actacatgga tcttttgaga      2580
     actgaacaac gtaaagcaac tgaaaatgga cctaccctcc agaacactga cttcggctgg      2640
     atcgtatctg gcaagattca taatcaccct tccaatggat cgcaatcgtt agctcttgtt      2700
     tgctccacaa tcgatcttca ggaacagctc acgaagttct gggatttgga aaactgtcga      2760
     agtcacagta ctcattcgct ggaagagtca gcatgtgaag agcatttcaa ccgcacaacc      2820
     attagggatc agagcggcag attcatagtg acactgccga aaaaggagaa cgtgatcaac      2880
     cggatagggt tttctgaagc cattgcgatt aaacgtatga tggggatgga acgacggttt      2940
     gctacaaatc cagagttgaa ggtgatgtac gtcgatttca tcagcgaata tctcgctctt      3000
     gggcacatga aggaggtcga agaagagaat gtagaagcag gagtcatcag gtactacttg      3060
     ccacaccacg ctgttctcaa gccagacagt tcaaccacaa aactacgagt ggtttttgat      3120
     gcttcgtgtc aaacttcgac tggagtttct ctgaatgatg cactgatggt cggtccagtc      3180
     gtccaggatg atctgtcaag tatctgtttg cggttccgaa ctcatcggat tgcagtgaat      3240
     gccgacattg ccaaaatgta tcgaatgatt cgagtacagc cacaagatta tccgttgcaa      3300
     agcatcaagt ggagacatga gccatctgaa cctcttcgca catacgagtt gaccaccgta      3360
     acgtacggta catcatctgc accatacctg gccacaaaat gtttgcagcg tttatcagaa      3420
     gacggtgtat cgtcgtaccc cgtagcatct aaggttatca agaaggattt ctacgttgat      3480
     gacatgctta ccggaattga cacggttgaa gaaggtcagc agttggtaaa ggaaatcatt      3540
     gatctgtcag attcagcagg tttcacgctg cgaaagtgga attccaatag tagagagctt      3600
     ctccaagtcg tccctgagaa actgagagat gaacgaaccg ttcttacgtt agactcatcc      3660
     gaagccacaa tcaaaacgtt aggcttagtt tgggaacctg gttcggatgt cttccgtttt      3720
     acatttcctt cgttcaactg ggcagcaaca gtaacgaaac gcgttgtagt atccgatgta      3780
     tctcgcctat ttgatccact gggtttagtt ggaccggtca tcattcaggc caagatattc      3840
     atccaggaat tgtggaggca gagcagcgaa tgggacgagc ccttgagtcc tgaattgcaa      3900
     gcccaatgga aggagtacag acgcaatcta acggggctag aaaacttaac tgttcctcgg      3960
     tgggtaggaa ctggcggtca catcgttacc accgagcttc acggcttctg tgacgcatcg      4020
     aataaagcat acggcgcatg tttttacata cgcacaatct ccgaaacggg ggaggtgtgt      4080
     gtgaggttat taacggcgaa gtcaagagta gccccactcg ataatttgag gaaaggaaac      4140
     aaacgactct ccactccacg cttggagcta tcatctgcgt tattattagc ccatctactt      4200
     gaaaaggtaa taagcagtat cggcatagct atgaggtgct tcttctggac ggattctacc      4260
     attgtcaaat gttggctttc gtcttcgccg tcaagatgga aacagtttgt agcgaataga      4320
     gtttcggaga ttcagcacat tacaagggat ggcgtctgga atcacgttgc tggactggaa      4380
     aatccagcgg acattatttc tcgcggaatg actcccgcgc agctacagta tgaatcactt      4440
     tggttcagtg gaccttattg gctaaggtmt gatgactgca actggccttc agcgccgccg      4500
     atcagcgaag acgatttcga tccgattgat cttgaagcac aaagcgtgtc agcagcattt      4560
     ccaacaattc aaccaagcga tatcttcagc ctccgatcat cgttcagcga tcttcaaaga      4620
     ctcactgcat ggatgctcag attccgtcac aactcgcaac tagcaaaccg taacatgcga      4680
     cgccatggta ttctcacgaa aatcgaactt gatgaagcat tgaagacatt gattcgtctc      4740
     tcacaacgag aaagctttcc gcaggagata gcagacctaa cgagcagcgg agaggttaga      4800
     gaatcgtcga agattgtagc gttaaatccg cagctaaagg acggaatgtt gtgcgttggc      4860
     ggccggcttc gccacgcttc gattgcgaca agtcgcaaac atccgtacat tctcgatcat      4920
     cgtcatccgt ttgcatatgt cgtcgtagtc cattatcatc tgaaawtgtt gcatgctggg      4980
     cagcagttga tcatttcgtc cattcgggag tgtttctggc cgacatgtgt ccggaatctc      5040
     gttcggaaag tgctccatga atgtgtgccc tgctttcgag caaggcccaa aatccaggat      5100
     cagattatgg ctgacctccc tcctgagaga gtcattcctt gtccaccgtt ccagcgagtg      5160
     ggtgtcgact actgcggtcc tttcaatgtt gcttatctac atcgacgcaa tcgtccggtg      5220
     aagatcttca tcgccgtata catctgccta gtgaccaagg ctgttcactt ggagctagct      5280
     tctgacttgt ccgctcaagg attcattgcg acccttaagc gtttcacttc acggcgtgga      5340
     aaaccgcaaa taataatgtg cgataatgga agaaacttcg tcggagcgag gcgccaatta      5400
     gatgaactgt gtcgactgtt taacgatcag aatttccagt catccgtgtc caggcaagca      5460
     aacgaggagc aaatagagtt tcgcttcatt cccgcacgct cgccaaactt cggtggcctg      5520
     tgggagtcag cagtcaagtc attcaaacta ctattcaaac gaacaatcgg cttgcgcacc      5580
     ctcttattcg acgagatgtc tacgatttta actcagttgg aagctgtttt gaattcgagg      5640
     ccacttacac cactaagtaa cgatccagat gattttgaag ccttaactcc cgggcatttt      5700
     ttgattcaac ggccccttac ggctatccca gaacccgatt tggatgggat tcctgagaat      5760
     cgcctttcag ccttccaaaa ggcgcaaagg tacacgcagc tactgtggaa aaagtggtct      5820
     aagctgtact tgtcggatct tcacaatcga acaaaatgga ctgtcagacg gaataatatc      5880
     acgataggaa ctatggtggt tctgaaagac gaagaacaac ctcctttgaa atggcttctc      5940
     gggcgtgtga cagaagtaca cgcgggcgac gacgggaatg tgcgggtcgt aaccgtcact      6000
     actaaagacg gcagctaccg tagagcaatc tcaaagattt gcatactacc gattcgggac      6060
     aatcctgttc caacaaatgg ggagatgtag atctccccca ccggcggagg tcgaatttcg      6120
     gcctccgcaa accagttaag tttttagcat attgtatttt tctgaaaaaa taacccgctc      6180
     atttttctca gtcacgattc gcccttgtct tccgttaccc ggaacaatct ccaaacgtat      6240
     acaaagtctg gctttgctcc tatcaattga ggtaatccgt acagtttcgg tggtggtcac      6300
     agtcgcatgg cagtccaagc atgaaatcag cggcgtccaa cgccagcgca cggcgccccg      6360
     ttcatttcat ataacattct gcatcacgtt ggattacttt gaggtcatct gtagcaatgg      6420
     aggaaaaggg ataagaaggc gcaatacaag tgatcatcat agaagaaaat cagtctaaac      6480
     ggcgttcaca gaaacgtcgc ggctccaacc caataacggc atgcagtcat aataatatcc      6540
     acctgtggcg atctagagag ggaaccaatg ccaactggca ttcgtggakg ccgcggtggc      6600
     ctccgtttca gggaagtcgt ttttaacttg attatcatga taaaaaagca ccctctcatc      6660
     tgttacagca accatccatc ctcatcacca tcaccgaaga gcgtcaatcc aataaacacc      6720
     acttccgacg gcatttccag cacgatattc cgttccagca gtctggcagt ctacttcttc      6780
     catcagttcc atctcgtaat catctcaacc cgataacgat cgaaatgcat cgttcatacg      6840
     atcagtacca gcaatacatc ttctttacaa caaccaaatt tctcaaaaca ccaacccagc      6900
     aagaaatgga gaggaacatc agtgccatcc ggcactcacg gaggccaagt aggcctccgt      6960
     tccagggaag tcttttctta ctgtgattaa aatgatcaaa aagcatcctc tcatctcttc      7020
     cagcaaccat atattcgaac cattatcaaa taattgtttc aattgagtga taataagtcg      7080
     tctcatcaat ccgtccaaga tttgaagaat gtccaagatt gattagcagt accagtccgg      7140
     cggtcaagca gcacctaaaa ttaagcagtg gtttattccg aattcaatct gcacatcatc      7200
     attgccaacc ggcacttgcg gaggccacgg gggcctccgt tccaggcaag tcgctttatt      7260
     tttggattaa aaaggtaaaa aagcaccctt tatattttca gcgactttgc ctcaaaaccg      7320
     tgtacagaaa catcaaggca gttggcataa tggaatttct acaactcact tacctgcagc      7380
     agccgatgga gtagaggttg aattacaacg tgaagcaaat cagtcatcca catcctacta      7440
     cgagcaacaa gaactgatct ccttcaaatg taggtcagaa tatcgatgcc cgttgtatgt      7500
     aaacagcacg aatgtgggtc agtaggacta gcatatagca gcagcctgag aactgtgatg      7560
     aactccacag ctaatacaat gtgattgtct gaaatgttta gtatataaga gtagaataac      7620
     cgtagcaaaa cagaaattca taaacacacg tgccagagca agacaggtaa attgaaatca      7680
     agatttcaag gcggccggca aa                                               7702
//
ID   BEL-844_AA-LTR repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-844_AA-I;
KW   BEL-844_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-356
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-356
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2143-2143 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 356 BP; 99 A; 66 C; 83 G; 108 T; 0 other;
     tgttagagca agaaagatag tttagttcga cagcaatatt taaatgatca cccctagtca        60
     ggtagaaagt gcgaaggttt ctctcgctgg cccgtctgct ctttttggat acatgcagct       120
     gatatgatcg tgccgatctg agcagctgct atgtacatag ataggtatgt tagagaagta       180
     agctagtgtt aatcagtata gtaataaacc gccgcggagg aaacatctcc tctttcgttt       240
     tgttaaacgg gaataaaatt ttcaatttag tgttcgcgta ataaagttgt tttcgtttgt       300
     aatcgcgagt ttcttactaa gtgtccgaac aatctaaccc gcggcgggcg cgaaca           356
//
ID   BEL-845_AA-I repbase;    DNA;    INV; 7888 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-845_;
KW   BEL-845_AA-I; BEL-845_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7888
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7888
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           741..6086
FT                 /product="BEL-845_AA-I_1p"
FT                 /translation="MADLRALAKSERRVLNTLDGLENFVRKYEPTKDEPQI
FT                 AVRLESLEAICKEFYSIRERIELLTDEAAEIEDDKDVRERERANLLALSEF
FT                 EERYFRLKANLISKRVFPPTTSASTGNGQPGDRCESSFSKVKLPEICLPSF
FT                 GGKIKEWITFRDSFCSLIHENRQLTDMDRFSYLKSALTGDALLEIESVEPS
FT                 AANYSVAWKALESRYENKKLIVKAHLDALFAVEALKKESYDGLNNLISVFE
FT                 KNLQMLQKIGEDTAAWSTIMAYMVYSRLDSATLRQWETHHNSKQVPTYQNL
FT                 IEFLRSHCAVLQSIAPINTTPGNYDYRSSKPSVCHTTLKSLKKCPFCGEVW
FT                 HSAFVCGTFQRLQVPERCEAVYKAKLCRNCLSPGHWARNCEKGVCHHCQQK
FT                 HHTLLHGAPTRSSVPQSQSNPPTQTRQQPQTQSTNQSQLTQNASDAGHSNS
FT                 QQQSTQSSATDTATSTTQTHIALPVTPTHNILLSTALVRVQDRQGNTMLAR
FT                 ALLDSCSQHCLMTKEFSTRMNFRVSPSYLSVQGIGSSISTSTRLVNTLVSP
FT                 RLEGISSFSQEMNFHVLPRLTVSLPTTSCDISGWNIPESAILADPCFHEPG
FT                 PVDIIIGAEYYMDLLRTEQRKATEDGPTLQNTEFGWIVSGKIPDQSSASQT
FT                 LAFVCSTSDLQEQLTKFWDLETCRSYSTHSLEESVCEDHFNSTTVRDQMGK
FT                 FVVTLPKKENVINQLGYSEATAVKRMLGMERRFAANPELKIMYVDFISEYL
FT                 ALGHMKEVQENTEVVGVRRYFLPHHAVLKPDSTTTKLRVVFDASCQTTTGV
FT                 SLNDALMVGPVVQDDLSSICLRFRTHRIAVNADIAKMYRMIRVQPQDFPLQ
FT                 SIKWRHDPSEPLRTYELTTVTYGTSSAPYLATKCLQRLAKDGESSHPAASK
FT                 VIKKDFYVDDLLTGVDTVEEGRQLVEEIINLSDSAGFTLRKWNSNSTDLLE
FT                 VIPENLRDERTILTLDSSDATIKTLGLAWEPGSDVFRFTFPSFNWSATITK
FT                 RVVVSDVSRLFDPLGLVGPVIIQAKIFIQELWKQSSEWDEPLSPALQAQWQ
FT                 EYRRNLAGLENLTVPRWLGTGGHIVITELHGFCDASNKAYGACFYIRTISE
FT                 TGELCVRLLTAKSRVAPLDNLKKGNKRLSTPRLELSSALLLTHLYEKVLSS
FT                 LSITVRSFFWTDSTIVKFWLSSPPSRWKQFIANRVSEIQHITKDGVWDHVA
FT                 GMENPADIISRGMTPAQLQYESLWFSGPYWLRSNECHWPSASQLSEEDFDL
FT                 VDLEVKSVSAILPTVQPSDIFSLRSSFSGLQRLTAWMLRFRYNSKQTNRNM
FT                 RRHGVLTKLELEEAVMALVRLSQRESFPQELADLKSGREVRESSNILVLNP
FT                 QLKDGILCVGGRLRHASITMHRKHPYILDHRHPFAYIVVAHYHLKLLHGGQ
FT                 QLVISSIRERFWPTSVRNLVRKVLHECVPCFRTRPKIQDQLMADLPPERVT
FT                 PCPPFQRVGVDYCGPFQVAYLHRRNRPVKTFVAVYVCLVTKAVHLELASDL
FT                 SAQGFISTLKRFSSRRGKPEIIMCDNGRNFVGARRQLDELCRLFNDQQFQS
FT                 SVSRQANEEQIEFRFIPARSPNFGGLWESAVKSFKMLFKRTIGVRTLLHDE
FT                 MNTVLTQAEAVLNSRPLTPLSNDPDDFEALTPGHFLIQRPLTAIPEPNLDG
FT                 IPENRLSAFQCTQRYTQQLWKKWSKLYLSDLHNRTKWTIRRNNIAVGTMVV
FT                 LKDEDQPPLKWLLGRVTEVHAGMDGNVRVVTVITKYGSYRRAISKICVLPI
FT                 RDNNVPPNGEN"
XX
SQ   Sequence 7888 BP; 2177 A; 1834 C; 1846 G; 2031 T; 0 other;
     ttttggtcct tcgaaccgga tctgtatatc ggacacttga gcgcggttcc gtgttgaatt        60
     gctacgatat ctcctgggtg gtgaagcaaa acggacaaag atactataag tgcgcgaaag       120
     ccgtcggcaa caaatttgca cggctcggaa gttttggaca gtggaatttc ttgccgctgc       180
     ctggatattg tgtgcaggag gtccaccaag agtcagtgaa gtcttctagt gccatttttc       240
     ttcgtgtgtc acggcgccat cgcgagaaga agattaagtc gttgcagcgg aggaggacat       300
     tttggacgag aagttgctgg aaggatcgcc atcactaaga ctggagcagc ccaacataaa       360
     tcggacatct ataatttggg aagtatacag tgcatgtatg gtagaattgc atgttggcta       420
     tctggtggta ataaattgat gaatagtgca tgcgagttgc ttcttatttg gagcttagcc       480
     ctgaggtgtc cgctagttgt tttggtctct gtatccgctg gagttgttgg tccttaaagg       540
     ttgaatcccc tcgctgctgt ctaaattgta ataaaacagt caatctgtct cgcgaggtcg       600
     cgatatttgt ggaacgttga gtcgatcgtc agtgattctg gtgctagtgg aagtgttgtg       660
     catagtgaag actaacaatt aattgcgctt ctcgtagtta gttgtaaatc tgtgtaacat       720
     aattgtttga agtattagca atggccgacc ttcgcgccct tgctaagagt gagcgacgtg       780
     tgctgaatac gctggatggt ctcgaaaatt ttgtgagaaa atatgaaccc accaaggacg       840
     aaccccaaat tgcggtgcgg cttgaatctc tggaagcaat atgcaaggag ttttactcaa       900
     ttcgcgaacg tatagagctg ttgaccgacg aagctgctga aattgaggat gataaggatg       960
     tacgagagcg tgaaagggct aacctgctgg ccctgagtga gttcgaggag cgatattttc      1020
     gtttgaaggc caatttaatt tcgaagcgtg tttttccacc aacaacctcc gcctctaccg      1080
     gaaatggaca accaggcgat cgatgcgaat cgtctttctc caaggttaaa ctaccagaga      1140
     tttgccttcc atcttttgga gggaagataa aggagtggat cacttttcga gacagcttct      1200
     gcagcttgat ccacgagaat aggcagctca ctgatatgga cagattcagc tacttgaaat      1260
     cggctttaac tggagatgct ttgttagaaa tcgaatcagt agaaccttcg gcagccaact      1320
     acagtgtagc gtggaaggct ttggaatccc gctacgaaaa taaaaaactt atagtgaagg      1380
     cccacctcga tgctctgttc gcagtggaag cattaaaaaa ggagagctat gacggtttga      1440
     ataatctaat aagcgtcttc gagaaaaatc tccaaatgtt gcagaagatc ggtgaagaca      1500
     ctgctgcatg gagtactatt atggcataca tggtctattc tcgattggat tccgctactc      1560
     tgcggcagtg ggaaacgcat cataattcga aacaagttcc aacgtaccaa aatttgatcg      1620
     agtttctgcg cagtcattgt gcagtgttgc aatccattgc tcctatcaac accacgccag      1680
     gcaattacga ttaccgttct tcgaagccct ctgtgtgtca taccactctg aaatcgttga      1740
     agaagtgccc attctgtgga gaagtgtggc attctgcttt cgtctgcggc acattccaaa      1800
     ggttgcaagt tcccgagaga tgtgaagctg tttacaaagc taagctgtgt cgcaattgtc      1860
     taagtcctgg tcattgggcg cgaaactgcg agaagggcgt ctgtcaccac tgccaacaga      1920
     aacaccacac tcttctgcat ggagcaccaa caagatcctc cgttccacaa tcgcagtcaa      1980
     atcctccgac tcaaaccaga caacagccac aaactcagtc tacaaaccag agccaactga      2040
     cacaaaacgc tagcgatgct ggacattcca actcgcaaca acagagcacg caatcatcag      2100
     ccacagacac agccacatct accactcaaa cacacattgc actcccagtt actcccacac      2160
     acaacatttt gctgtctacc gccctagtga gagttcaaga tcgtcaaggt aataccatgc      2220
     tagcacgagc gctgcttgat tcgtgctctc agcactgcct gatgactaag gagttctcta      2280
     ctaggatgaa tttccgtgtg tcgccatcat atctctccgt tcaggggatt ggttcatcga      2340
     ttagcacatc gacaagactt gttaatacct tagtcagccc gagactggaa gggatttcgt      2400
     cgttctcaca agaaatgaat ttccatgttc tcccacgttt aactgtgtcg ttacccacga      2460
     caagctgtga tattagcgga tggaacattc ctgaatcagc tattcttgcc gatccttgtt      2520
     tccatgagcc aggtcctgta gatattatta tcggagcgga gtactacatg gaccttctgc      2580
     ggaccgaaca acgtaaggcg accgaagatg ggcccacact gcagaacacc gagtttggct      2640
     ggatcgtatc gggaaaaatt cccgaccagt catctgcatc acaaacactt gctttcgttt      2700
     gctctacgag tgatctccaa gaacagctca cgaaattctg ggatttagaa acctgtagga      2760
     gttacagcac tcattcacta gaagaatcgg tatgcgaaga ccatttcaat agcacaactg      2820
     tcagagatca gatgggcaag ttcgtcgtta cactgccgaa gaaagagaat gttatcaacc      2880
     agttaggtta ttcggaagcc actgcggtca agcgaatgtt gggtatggaa cgacgttttg      2940
     ctgcgaatcc agaattgaag ataatgtacg ttgattttat tagtgaatat ctcgctcttg      3000
     gacacatgaa ggaagttcaa gagaatacag aggtagtagg agtcagaagg tacttcttac      3060
     cgcaccacgc tgttctcaag ccggacagca caactacaaa actgagagtg gtatttgatg      3120
     cttcgtgcca gacgacgacc ggagtttccc tgaacgacgc tctgatggtt ggccctgtcg      3180
     ttcaggatga tctttccagt atttgcttac ggttccgaac acacagaatt gctgtgaatg      3240
     ctgacattgc caaaatgtat cgcatgatcc gagttcagcc gcaggatttt ccgttacaga      3300
     gcatcaagtg gaggcatgat ccatctgagc cgcttcgtac gtacgagcta actaccgtaa      3360
     catacggcac atcgtctgca ccatacttgg ctacgaaatg cttgcaacgt ctagcgaaag      3420
     acggagaatc gtcacaccca gcagcgtcca aggtgatcaa aaaggatttc tacgttgatg      3480
     atttgcttac cggagttgat acggttgaag aaggtcggca attggtagag gaaattatta      3540
     atctatcaga ttcagcaggt ttcacgctgc ggaagtggaa ttcaaacagc acagatctcc      3600
     tagaagtcat tccagaaaac ttaagggacg aacggaccat tctcacatta gattcgtccg      3660
     atgccacaat caaaacttta ggtttggctt gggaacctgg atcagacgtc ttccgtttta      3720
     cttttccctc attcaactgg tcagcaacga taacgaagcg agttgtagta tctgacgtgt      3780
     cccgtctgtt cgatccattg ggtttggttg gacctgtcat catccaggct aagattttca      3840
     tccaggagct gtggaaacag agcagcgaat gggatgaacc cctgagtccg gcgttacaag      3900
     cgcaatggca ggaatacaga cgtaatctag caggcctaga aaacctaact gttccccgtt      3960
     ggttaggaac tggtggccat atcgttatca cagaacttca cggtttttgc gacgcgtcga      4020
     ataaagcata cggtgcctgc ttctatataa gaacaatctc cgaaacgggg gagttgtgtg      4080
     tgagattgtt gacggcgaag tcaagagtcg ctccgctcga taatctgaag aaaggcaaca      4140
     agcgactctc caccccaaga ttagaactgt cttctgcgtt gttgctaacc catctatatg      4200
     aaaaggtcct gagcagcctt agtataactg tgaggagctt cttctggaca gactctacca      4260
     tcgtcaagtt ttggctttcg tcaccgccgt caagatggaa gcagttcata gcaaataggg      4320
     tttcggagat tcagcacatc acaaaggatg gagtatggga tcacgttgca ggaatggaaa      4380
     atccagcaga tattatttct cgtggaatga ctcccgcgca gttacaatat gaatcgctat      4440
     ggtttagtgg tccgtattgg ttgcggtcga atgaatgtca ctggccatct gcttcgcaac      4500
     tcagcgaaga agactttgat ttggtggatc tcgaagtcaa gagcgtttca gccatacttc      4560
     ctacagtaca accaagcgac atcttcagtc tacgatcatc attcagcggt cttcaacgtc      4620
     ttacggcttg gatgctcaga tttcgttaca attcaaaaca aacgaaccgt aacatgcgtc      4680
     gtcatggtgt ccttactaaa ctcgagcttg aagaagcggt gatggcattg gttcgtctct      4740
     cccaaaggga aagctttccg caggaattag cagacttgaa gagcggcaga gaagttagag      4800
     aatcgtcgaa tattctggtt ttgaatccgc agcttaaaga cggaatattg tgcgttggcg      4860
     gtcggctgcg tcacgcttca ataacgatgc accgtaaaca tccgtacata ctcgatcatc      4920
     gtcatccatt tgcatacatt gttgtcgcgc actatcatct aaagctgttg catggcggac      4980
     agcagctggt catttcatcc atcagggaac gtttttggcc gacgagcgtt cggaatctcg      5040
     tccggaaggt gctccatgaa tgtgtgccgt gtttcagaac aaggccaaaa atccaggatc      5100
     agctgatggc tgatcttcct cctgagagag tcactccttg tccaccattc caacgagttg      5160
     gagttgatta ctgtggtccg ttccaggtcg catatctgca ccgacgcaat cgtccagtca      5220
     agacatttgt cgcagtttac gtctgcctag tgaccaaggc ggtccacttg gagctagcgt      5280
     cagatttgtc cgctcaagga ttcatttcaa ccttgaagcg cttttcttcc cgacgtggca      5340
     aaccggaaat aattatgtgt gacaatggaa gaaatttcgt cggagcgagg cgtcaattag      5400
     atgaactatg caggctattc aatgatcagc aattccagtc gtccgtatct agacaagcaa      5460
     acgaggagca gatagagttt cgtttcattc cagcacgttc gccaaacttt ggtggactct      5520
     gggaatcagc agtcaaatcg ttcaagatgt tgttcaaacg aaccatcggc gtgcgcacgc      5580
     tcctacacga tgagatgaat acggttttga ctcaagctga ggcagttctg aattcaagac      5640
     cgttgacacc gctcagtaat gatccagacg acttcgaggc gttgactcct ggtcatttcc      5700
     tcattcagcg acctcttacg gccattccgg aaccaaattt ggatgggatt ccagagaatc      5760
     gcctttcagc attccaatgt actcagcggt acacgcagca attgtggaag aaatggtcta      5820
     aactatacct gtcggacctc cacaatcgga ctaaatggac catcagacga aacaacattg      5880
     cggtaggaac catggtggtc ctgaaagacg aagatcaacc tcctctgaag tggctacttg      5940
     gtcgtgtgac agaggttcat gcaggcatgg acggaaatgt gcgggtcgtg accgtcatca      6000
     ccaaatacgg cagctaccgt agagcaatct caaagatttg cgtgctgccg attcgtgaca      6060
     ataatgttcc accaaatggg gagaactagg tctcctccac cggcggaggt cgaaactttt      6120
     ggcctccgcg tatcagttaa gttttttata tattatattt tccaaaaagt aacccgttca      6180
     tttttcccag tcacgattcg cctttggttt cggtaaccga agcagtttct cacttcaaca      6240
     acgagtcaac tttgccctta tcagacgagg taatctgtat tgtttcggtg gtggtcagag      6300
     gttgcatgtg tagttgatta tgtacaagca tgaatagcat cagcggcgtt caacgccagc      6360
     gcttcggcgc cctgccagtt ctgtactact ttggaaccat atttggctat ttcgaggtca      6420
     tctataatta cattggatgt gcaatcattc tccgaggtgc tacaaggagc cgtattatca      6480
     acccataacg attgtgatat gatctaatcc gatcatgaga gggaaaacaa tgccatcagg      6540
     cattcatgga ggccacggag gcctccattc cagggaagtc gttttttatt atgattatta      6600
     ggataaaaaa gcaccctctc atctgttaca gaatcatgca accataattc atcaccgaag      6660
     agtttcgcat caacaaccac cagttccgac ggcattgacc catcttagcg caactgtcca      6720
     ttgttgcatt tgagcaattc tcgctgaaac caggtcgcaa gctgcacatt agctactgca      6780
     catcagttaa ggtccatcag tcgtcaatcg ccgttccaga tcaataatat tcaaatcatc      6840
     aagtcactcc accagttcta tcgtccatcc gtcctacatc aatattgcat catcatttca      6900
     aaaaccggaa gcactcaaaa ccatactcag tatgagattg agagagacat aggtgctagc      6960
     cggcgccagc ggaggccatg gaggcctccg ctccagggaa gttttttttg tagtacgatt      7020
     aaaaagatta aaaagcaccc tctcatctct tacagaaaca atgtattaag acatctcgag      7080
     ttacaataac aagatcgata gcaattcgtc gtccttgaga gccacgcgtc gcagtaatct      7140
     tctctcgcca cccagtgatc gagttgcagg accacccaac gtactcccac caaaatgcaa      7200
     cgaggcatgt ttaaagcatg gtaccggcgg tcacgtttag cgacgattcg tccaaccagt      7260
     ccgtccaagt gaatatgcat tcgaagattg aaacccactg aacctgaaag aaatctgcat      7320
     cagtcaactt gcttaccaac attgatcttt accataatgt taggcggatt gggaagccaa      7380
     gccaagtgcc acttggcact cacggaggcc acggaggcct ccgttccagg caagtcgctt      7440
     taatttttga ttataaaggt aaaaaagcac cctttcatat tttccagcgg ctttactggt      7500
     caaagcagca ccgaggccca gtctgtatgg cgaaattgaa ctacgatcag ctacttaccc      7560
     gattacatag cgtaccaagc ggtgatcgtt ggaatagaga acatctccag taggactgaa      7620
     atgaagccat ctacgaacac tctaaacgaa ccagcagcag cattaaaaca caaccattcg      7680
     aatgtaggtc aaatcgtcgt agtaactagg tcagcagtgc tagaggtata taagtcgtgg      7740
     tatataatat cagtagtcgg taatcaaagg ctttcaaaca acaacatcga aaatcgtgat      7800
     caaaacaaac gttaagatca aattcgtagg tagcgagagt aggatagcta gtcaatttgg      7860
     aatcatagat cccaaggcgg ccggcata                                         7888
//
ID   BEL-845_AA-LTR repbase;    DNA;    INV; 348 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-845_AA-I;
KW   BEL-845_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-348
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-348
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2144-2144 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 348 BP; 102 A; 71 C; 80 G; 95 T; 0 other;
     tggtagagcg aaaggcgaaa tgatcgatgc tgaaattttc ctcaggcatc cctactgtga        60
     aggtttatct gtcgtttcgc tatcggttat cagcacacaa tcggtcccgg ctatcgagac       120
     cagtgagccc gcatattgta tatacatagt aagaaagatc gatcaaaaca gaacattttt       180
     agcagtaagt cagtagtata ataaaccgtc gcgggagaaa catctctttc gtttcgattc       240
     gagaataaaa ttgttcttag tgttcgcgtc acaataaagg tgtttcgatt cgtaaatacg       300
     atttctctga taagtgtccg aaaaggctac ccgcggcggg cgcgaaca                    348
//
ID   BEL-846_AA-I repbase;    DNA;    INV; 6519 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-846_;
KW   BEL-846_AA-I; BEL-846_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6519
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6519
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2124-2124 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6519 BP; 1847 A; 1439 C; 1705 G; 1522 T; 6 other;
     ttcttcaaag attttcatcc gaagttggat gattgttgcc catcgctgtc ccgaggataa        60
     gttgattacc cggaagattt ccatcaatcg aacgacccac gactgaagac cactatcgtc       120
     atcacagccg acgggaaact ggaggtttga ttacagcaaa aaccaagtca gtaaacactt       180
     cccttttttt gatttgcctc caccacagtt ggtgtcccta cagttagtag taaagtaagt       240
     ttgcctttag agagctgaaa ttagaccgaa cagcctaatc atgcctagaa acggtaaaaa       300
     tgttacaaaa tctgagggta tagataagcc gtgtaagaaa tgcaataaaa aggagggtga       360
     cgataattgg gtctgctgtg atgtatgcga aatgtgggaa cattttcagt gcgcgggtgt       420
     gaacgaatcg atcgcggaga aaagttggaa gtgtagtgat tgccttgccg actgggacgg       480
     taccgacatt acatcgaagt cgggagtatc gttcaatgaa tcatctgtaa gcaagagcag       540
     tagtcgagca tcacaaagat tgcagctcag tttgcagcac ctggaggagc aacggaagct       600
     gagcaaattg cgagctgtgg aagagcggaa gatgaaggaa gaagaagcaa ggctgaaaaa       660
     gttgcaatcg gaagaagaac tgaaacaact aaatgaagag caggaatatt tgaagcaaag       720
     gtacgaccta ctgatgcaga ttgaagacga aaaggatcca tccagtcgac ggagcggagt       780
     gagcctgaaa agcaagcgga gcacagttag gagcggtgta agtgtgaaga gtaagcgcga       840
     ccagttggaa aagtggttga agggagctac ggtggacgaa gctggacagt cgaagccatc       900
     ctcgtcagga ccccaagttg ccctgccggt tcacacagtc agtgaatcaa atcaacagtc       960
     cgtggtagtc agcaaatcac aaacaccagc tgtttcactg caggttcctg ctcccccgaa      1020
     cgtggattta ctgtgtcctt ctgtatcagc aaacatggga aatgtcacag cgttggcgaa      1080
     atcatatgag cagctgttgt ctgggcaaac gatcactaca ttgtgcgaag gcacaacagg      1140
     agttccaacc gttgctgtat cacagcagcg tggaatatca gttccgttta ggccagcggt      1200
     ttctgaaatt tcgaacggga ttctttcagc tatgcaaaac gttcgagttt ctgattgcgt      1260
     cgcatcgtgt ttacccagta atactttctc aacgcagaat acgtttattc ctgcagtaac      1320
     aggtattgcg ccacaatctt cagtcagcgc aagcggtttg atgacaacag tttatggaaa      1380
     ccatccatat tatacagcac ccatggctca tctgataccg acgaatgcgt taaatacagt      1440
     gaacgcatcg caagccggta ctagtaatgt tcttccgcaa ccatttccaa ccagctcagt      1500
     ggcaccagca gtaccaacta tgttaccatc tggagcattc gtacctggcg tagatatggc      1560
     accatccaga tctgttgtgg gaccaacaag tgcccaactg gcggccagac aagtgatgcc      1620
     tcgtgagctg ccgaagttca atggtgagcc acaggagtgg cctatattct acagttcatt      1680
     caagaacact accgaggttt gcggatacac cgatgcggag aatttggcta gattgcagcg      1740
     aagcttggga ggctctgctt tggaggcggt acgcagtcgt cttctactac cggcatctgt      1800
     tccatatgtg atggatacgc tgcataagct ctatggacga ccagagatac tgatcagttc      1860
     gctactgaag aaggtgcgaa acgtgccacc acccaaggcg gagaacttga gtacgattgt      1920
     cgcttacgga ttagcgattc agaacttggt cgaccatatt atcttggccg atcaacaggc      1980
     gcatttgtca aatccaatgc tacttcaaga attggtcgac aagctaccca catcactgaa      2040
     gatgcagtgg ggtacttata agcaagcatt cgcgattgtc aacctggcga catttaatgg      2100
     tttcatggcg ggtcttgtta atttggcctc agagttgacc atcgatgtag actctgctca      2160
     gaatcatcaa aaatcagtca gagcagagaa gccgaagcag agggagaagc tgttcacaca      2220
     tgccaatgaa tcttcttgtg caccgaagga gacgtctgcg gaatggacaa ctgcaaaaac      2280
     ctgttcctat tgtggaaatg ataatcatca gatcctgaac tgttccagtt tcaaatcgtt      2340
     ggatatcgga gcgagatgga aggcaatgcg ccagaagaat ttgtgtcggt tgtgtctagt      2400
     tccgcatcgt aagtggccat gccgctcaaa gaaggagtgc ggagtcgacg gctgtcgtat      2460
     ccgacatcac acgttgctgc acagtagcca gcctagtcga agtggacctg tggaaaccac      2520
     gaagccgacc gaatcagtac accacaacta ccaccacacg aagtcgtttt ccctgttccg      2580
     ttatctgcca gtcacgctta agggaaatgg aaaacaagtg gaaacatacg ctttccttga      2640
     tgatgggtcg tcgtcaacat tattggacga ggcgattgca gttcagttgg ggattgaagg      2700
     agagccggac aacctctggc taggatggac cggaaagatc ggcagacatg aaaagagctc      2760
     caaaagggtt ggtgtagaaa tttctggaac tggtaagcag gaatcgttcc agataagcaa      2820
     cgtaaggaca gtgcatgagt tgggacttcc cagtcaaagt ttaaactaca gtgagctctc      2880
     tawgacctac ccgcacctac agggtctacc agttagcagt tatgccaatg caaaacctag      2940
     tattatcatc ggcattgaac atgtacatct cctcactaat ctgaaggttc gtgagggcgg      3000
     aaaaagtgat ccagtggcaa cgaaaactcg ccttggctgg tgtgtctacg gaagaaattc      3060
     tgggaacgat gaatccgtag aacagttaaa tctccacatc gagcaagaga tgagtaacag      3120
     tgacctatat gactcgatga agaagttctt cgccgtcgag gaagccgttg tgacgaagcc      3180
     cattgaatct gaacaaaatc tacgagcccg aagtattttg gaagcaacca cagtgcgccg      3240
     aggatctaga gttgagaccg gcttgttgtg gcgtaaggag aacatccact ttccagagag      3300
     ctaccagatg gcgatgagcc gactccgggg actagagaaa cgtttatcca gagactcaga      3360
     gcttcgaagg agagtcaacg aacagatcga cagttacgaa caaaaacagt atatcgctaa      3420
     agcatcaaca gaacagatcg ccagtctgaa tcctcaccgg gtctggtact tacctcttgg      3480
     ggtagtgatc aatcccaaga agccaagtaa aatccgtatg gtttgggatg cggctgcgaa      3540
     agttggtgga gtttgcttca acgatatgct ccttaagggc ccggatcttc tagtgtctct      3600
     tatggaggtt ctgttgcgat tccgacaagg gaagattgct gtttgctctg atatccggga      3660
     aatgttttta cgtattctca tccgagatga agacaaatgg tcacagtgtt ttctttggag      3720
     aagcagtcct gaagacgatg tgcaagttta cgtgatcaac gttgcaatgt tcggtgccac      3780
     gagctctcca tgcacagcgc agtttgtaaa gaattggaac gcatccgatt acagtgatca      3840
     gtaccccagg gcagtagaag cagtaactaa gaaccactac gtggatgatt tcctcgatag      3900
     cgtcaattcg gtagaagaag cagtagagct ggtgaaacaa gtacaagaca ttcacgcagc      3960
     agccggtttc caattcggaa aagtactgtc caacaatcag gaggtactag accgactagg      4020
     agaagcgagt tcggagacca gtaagcaact tcctctcgac aaagacgcag cctatgaacg      4080
     agtgctgggt gtgacgtgga ttccatctga ggatacattt acattcagtc agcacggagt      4140
     agaggaagtg ttaagcatcg agtcggcgat tccaacaaaa cggcaggtgc tgcgtatcgt      4200
     tatgaaactg tacgaccccc taggattcgt cgcgcacttt gttgtgcagg ggaaaatact      4260
     gatgcaggag atttggcgca ctggcacgaa ctgggatgaa ccaatctcag aacagttaca      4320
     cgagctgtgg actaggtgga tcgaacagta ccgaaagatc aacgaagtga gtgttccccg      4380
     ttgtttcttc ggaaaattct ggccgcagca agtcagtgat atccagattc acgtcttcac      4440
     ggacgcaagt gtgtctgcgt gtgcatgcgt ggcttatttg agagtgacag cggacggaga      4500
     gaatcagtgt tcattaatag ctgcaaaaac caaagtagca ccgctccgta cgctctccat      4560
     tccacgcttg gaattgcaag cagctatgat gggttcacgc ctgttacaga atatctgctc      4620
     ggcgcttaca gttagcatcc aaagacgttt cctatggaca gattcggcca cagttcttgc      4680
     gtggcttcgc tctgacagtc gtcgttacca ccaattcgtt tccttccgtg tcggcgaaat      4740
     tctgtcactt actagtgtgg atgaatggcg ctacgtaccc tctcgtgaaa atgtagcaga      4800
     cgatgcgaca aaatggagcg caggtccatc attcgatcca gactgtcgtt ggtatcaagg      4860
     tccagcattc ttgcaagatc cagagagtca atggccaacg gaacgatcag aagttactgt      4920
     ggaaacagac gctacatgtg aagaaatacg cttcgtttca gtccatcgca cagtggagga      4980
     agtgatagat gtacagcgtt tctcaaactg gaacagacta ctacgtgcag tagcatacgt      5040
     tcatcgagca gtagcagtat ggaaacattc gtcaaacgag agaatgccaa tcaaaatatt      5100
     aagtcaaagc gagtttgtaa aggcagagga aacactgtgg cgtcaagcac aagcagaggc      5160
     atttattgaa gaaattaatc tgttaaacga aggtcaaagt gtggcgaaag gaagtgcgat      5220
     tcgtgcgctg tccccatttt tagacgatca tggggtctta cgggttgggg gcagaatcga      5280
     gaatgcccca aacatccctt atgaagcgaa gcacccagta gtgctgccaa gaaaccataa      5340
     aatcacggat ctcatcgtac tcagttttca ccagcgtttc cttcacgcca acagtgaaac      5400
     agtttgtaac gaactgaggc agcagttcta catcccgagg atgcgaacag ttgtgaggag      5460
     cgtatgtcgc agttgtcagt actgtaagat taaaagggca actccagcac caccgttgat      5520
     gggaccgctt ccaaaggttc gtctgactcc gttcattcgg ccgtttacgt atgtaggcgt      5580
     ggactatatg ggtcacttcg aagtgaaagt cggacgcagt attgtcaagc ggtggatatg      5640
     tctgttcacc tgccttacag ttagagcagt tcatttggaa ctagcacaca gtctgtctac      5700
     taaatcctgt gtgatggcat tcagaagatt cgtaaaccga cgaggagctc cactcgaggt      5760
     cttttcagac aatggcacca actttgtggg tgccaaccgt cagttaacag aagagatgca      5820
     aaggattaag gctattaacg aagattgtgc atctaccttc accaatgctt gcacgcagtg      5880
     gcacttcaac gttcctgctg ccccccacat gggaggacca tgggagagga tggttaagtc      5940
     agtgaaagtg kctatggcag ctatttcgga cagtccacac catccsagcg atgaggtgtt      6000
     tgaaacgata atgctggaag ctgaagggat tgtaaactgc cgtcctctca cttacgttcc      6060
     gttggatgca gctgatcaag aagcgctaac tccaaaccac ttcttgctgt acggtacgag      6120
     tggagtcaag caaccaacag ttacagttga tcagccagta actctccggg acagctgggc      6180
     aatcggtaag aatwtcatgg acgaattttg gcgccgatgg gtgttggagt atctgccgat      6240
     gctgacaaga aggacaaagt ggtttgagaa cgtgaagccg ttagagccgg gcgatttggt      6300
     tgtgataatc gacgakaaga tccgtaacag ttgggaaaga ggacggatcc tggaagtctt      6360
     tccggacawa tctggccaag tgcgacgtgc agttgtacaa acagctcgag gagtattcgc      6420
     cagacctgct gttaaactgg cagtcctgga cgttgcaggt gataggacga agccggagga      6480
     agttgctccg gaaacggaag tggttcacgg gtcggggaa                             6519
//
ID   BEL-846_AA-LTR repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-846_AA-I;
KW   BEL-846_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-626
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-626
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2145-2145 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 626 BP; 214 A; 105 C; 131 G; 176 T; 0 other;
     tgttaccggc aacactgttg accgcgaaac ggttgtgaga ccactgtcgg atccctcgca        60
     actgagcggt aaccgccgag tggaatgaca gatcggagaa aaacaatatt tgcgtcaaaa       120
     agaaacagca aaagcattag ttagcagttc tttcttaaca ataaaagtat aattatcaag       180
     tgaattccat aactgattgt atttgtaagt gaaatttaat agtgaattta atactgtaca       240
     actgtcgtgt aaactgatcg aatttgttcc tttagatagc acagtgaatc aatcacgaaa       300
     atcccacgca gtaagtggag agtcggtagt taactgaggt atgtctgtca gggaccgtga       360
     atctattctt tgccaatttg agataaccta aaatacccac gtgaattagt tgtaacagtt       420
     actgtaatat ttgtacatgt aggacagtat ttgacggtgt aacagttgaa cgaatcagcg       480
     aagaatcata acaagaacac tgaaaatgtg agtaaactgt atactgtaac tgtgaacttt       540
     gtaataatta atttaataaa ttacagcttt gaagctgcta agtcggcaac tgcaaggaac       600
     ggtgtttgtt ctgaccatcg agaaca                                            626
//
ID   BEL-848_AA-I repbase;    DNA;    INV; 6332 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-848_;
KW   BEL-848_AA-I; BEL-848_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6332
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6332
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2125-2125 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6332 BP; 1604 A; 1604 C; 1543 G; 1581 T; 0 other;
     tggtccttcg agccggatga gcgtcgaaag gaatccgctc agactggtca atcctggatg        60
     ttattgtgca gaagaatagc actacgcgcc cattctaatg gattgcatgg cgagcgcgcc       120
     attacatcac tgctgtttat tgtaatacta caaggcattt tcatgcctca cataggtgag       180
     tgcaattcct atcactgtaa accgttgaga aatgttctac cgtggtcttt ttttgcatgc       240
     tgaacactga ttgctgctta accgccgttt ttgatggtca acggtggcaa tttgaggcgt       300
     tcgcaaagct ggttgcagag cgctgatccg tattttgcgt catatcgagt caaccattcc       360
     actaaggatc ggtcgatgac cccgaggctg gtcgttgacc tcatcaaaca gccatcatcg       420
     cagtgtgaat gaacagagcg ataccgtcat cacaatcaac tgaacgatat catcatttgt       480
     ccgtcgtcag ggattggaaa tttcaaccca tgcgagcagc cgatttgaat attttacaag       540
     gcaatacatt gcctgatacc aggtaattag ggtttcaatc aaattcaccc gtgtttgcgc       600
     ggtctacgcg gttttttggt tgtagattcc gccatcaatc gtcaacatgt ctgctgctga       660
     gaggagattc cgcggtttga agaatcgcaa acgcagtatc ctcacatctt tgtcggggat       720
     tagaaccttc gtcaacaatt atcaagccga cagagataag cgcgaggtgc ccgttcgtct       780
     ggagaatctg atggacttgt ggaccgaatt taactccgta caaggtgagc tggagacgtt       840
     ggaggaagct gacgaagttc tagacgcatt cttgaaggag cgaacagagg tagaaaagct       900
     ttactacata gccaaaggta cgttactaca actgcatcaa actgagccgg caccagtggc       960
     ccgaacctct gaaacgaatc aagttgccca cattaagctg ccagatatta aaatacccgt      1020
     ttttgatgga aattttgaaa gctggcttaa tttccacgat ttatttgtat cgctcgtgca      1080
     cacttcgacc tctttgtcga cgatacaaaa attttactac ttgcgttctt cattggctgg      1140
     agaagcgctt aaattaatcc aaaccatccc aataagcaac gaagcagtac cccatcgctt      1200
     ggaatttgtt ggtaagccac tatcaaaatg atcggcgctt gaaacgtacc tacgtccaat      1260
     ctcttttcga gttcccctgc ctaaagcgag agacggccgt ggaattgcac ggcctcattg      1320
     aaaaattcca ggctaatgta aaggtgttaa agcaattagg ggaacacact gagcattggg      1380
     acgttttact gattcatctg ctcagttcgc ggctagattc tgtaacaaga cgcgattggg      1440
     aagaatacgc ggaggcaaac gacgtgaaca agttccagca gttgattgag ttccttcagc      1500
     gacgagtgaa cgtgttggaa acggttagcg gaaagtcggt ggagatgtca gcgccagcga      1560
     aaaggttcaa ctcagcccga gctgccaaca ttggcgctac tcaacaggga tcgtggcagt      1620
     gttcggcatg tcccggcaag catcctctct acgcgtgcgg tgaattttcg aaaatgacgg      1680
     tcgatgagaa ggagcaacaa gttcggcgaa acagactttg ccggaactgt ttgcggcggg      1740
     ggcacatggc caaggagtgc ccatcagaaa gcagttgtcg caagtgcaga ggacgacatc      1800
     acacactctt gtgctacggt tcaaaatcgg agggcagcag tcaatcagca tccattgccc      1860
     agtcaagcca gccatccagc aacaacgaaa caacgttttc ctccaccccc gcagcacata      1920
     caggcatcac cagctgcacg tctctggaca attcccgaac gaaggtcctg ttggctacag      1980
     cgatcgtcat catggtggat agcagtggga aggagcatcc agtacgtgcc ttgctggatt      2040
     caggcagtga atgttgcttc gcaacggagc gagtagcaca acaaatgcat gtcgtcgaac      2100
     cctagttaat ttgccaatcg caggaattgg tgaagcggcc accaatgtcc gctgcaagtt      2160
     tgagtctatt atcaaatcca gaatctctga ttatagcacc acaatcgaag tttacgtcct      2220
     acccaaagtc accgttgatt tgccatcggt ctccgtcgat gcgtcgagct ggtctcttcc      2280
     aactggaatc caattagctg atccatcatt ttaccaatct ggggccatcg atgttgtact      2340
     gggagcagaa gtattttttg atttgttcag tgttgcgggg cgcattccgt tgggtgagtc      2400
     gctcccttgc ctagtgaatt ccgttttcgg ttgggtaatt agcggcaaaa cctcggaaag      2460
     aagaacaaaa tcagccgcag tttgcaatgt cgcaaccact gccgagttac aacgcaacat      2520
     ggagcgattt tgggcgatcg aggacgattc gacagtcgta caatctacag gggaagccta      2580
     ctgtgaagag ttcttctcta aaacaattat ttctggtgaa gacggacggt acatggtgcg      2640
     cgtacctttc aaggaagacg ttctaaagaa ggtggggaac aatagacgca ctgcacttca      2700
     tcgctttcgc ttgattgaga atcggctggg acgagatcag cagctagccg aggagtatac      2760
     aaagtttatg gacgaatacg agaagctagg ccatatggag cggattgaca actcggaggc      2820
     agcatctgaa tgtgcctact tcattcccca ccacccagtg attcgcgagg agagcacaac      2880
     cactaaggtc cgcgtcgttt tcgatgcctc gtgtaagagc gccagtggat tttctttgaa      2940
     cgatgctatg ctagttgggc cgatcgttca agaggattta aggtcaatta cgatgcgatc      3000
     tcgcctgcat ccgatcatgc ttattgctga cattgccaaa atgtatcggc aaattttgct      3060
     atctcccgaa gatagtcaat tccacttaat cttttggcgt cgagcacaag cagacccgat      3120
     ccaagtcttc aggctgaaga ctgtaaccta cggtactgct tcagctccgt atttagctac      3180
     cagagtactg aagcagatta cactcgacga aggcgcaaac tttccagtcg ctgctcaggc      3240
     ggccagtgag gatttttacg tagacgactt tttctcaggg gcaagcactg tcgctgacgc      3300
     tattgaactc cgtgaacaga tggacgccat gttaaactcc gccggtatgc aactccggaa      3360
     atgggcgagc aattgtccag cagtgcttga aggcattcct cccgctaacc gagcgttgga      3420
     gccctcggtg gactttgtga aggatcagtc catcaaaacc ctgggattgc attgggagcc      3480
     tgcctctgat cagttgaagt acgttgttcc cgaagtctcc atcgacgctg acactgtagt      3540
     tacgaaacga agttccttgt ccactatcgc caagttgttc gacccactcg gtttggtagg      3600
     ccctgttgta gttgtcgcca aagtcttcat gcaagcgctg tggggtctga aggacgaaaa      3660
     taacaagccg tacgactggg atacagagct accagaccac atgaaacgcc gctggatcga      3720
     atactgctcc gaactacctc gtttgaatga attgcgcatc aataggttca ttttgcttca      3780
     agattcaact gctgctgagc tccacttctt ttcggatgca tctttagtcg cttacggaac      3840
     gtgtgcgtat attcgatcgt cgaacgccct cgggacgata aaggtcgcgc tcctgacgtg      3900
     tcgttcaaaa gtcgcaccac tcaaacaaca aagtattccc cgcttgaact ttgtggtgca      3960
     ctgttagccg ctgaactcta ccgtaaggtg tccactgcac tgcgtattac ctccaaggcg      4020
     tacttctggg ttgattcaac aaccgttttg agttggctca aggctacacc ttcgacgtgg      4080
     tccacgttcg tcggcaatcg cgtctcgaaa atccagcaaa ttacggagaa cagcgaatgg      4140
     aaccacatcg ctggtcgcga aaatcccgct gatataatct cgagaggact accagcggcg      4200
     gaccttcttc agtgtcaaca gtggtggcag ggccctccat ggcttcgaca cgaaaggcaa      4260
     tcgtggccaa ttcaagtcaa cgaagctatt gaccaagaag tagcaaagga agcaaggaaa      4320
     acatcattcg ctgcagcgtc accatctcca acattcgtag aagagtacgt cggtcgattc      4380
     tccaactatc agcatatgct tcgaattact gcctactgga ggcgatactt taacaatctg      4440
     cgtctaccaa aagccgagcg agtcggttcc tcgccactgt ctaccgccga gattctcagc      4500
     gctgagctaa ctcttgttcg tttggtacag aaggacagct ttacggcgga attgaaggct      4560
     gtcagaggaa accaaactat ctcttcacac tctcgacttc gttggttcca tcgaatcgtt      4620
     gactcgcacg atgttctccg catcggtgga cgtctcgatc gttcggcaca acctttcgat      4680
     tcccgtcatc agatcctgct gccaggttca cacccgttca cagaacttct tgttcggagt      4740
     cagcatgaac gtcttcttca cgcagcagtg cagcttctca ccaacactct ccggctgcga      4800
     ttttggatct tgggaggtag aaatactact cggcggattg ttcacaactg cgttacgtgt      4860
     ttccgggcaa agccgaaagc gatcgaacag ttcatggccg aacttccatc acagcgggtc      4920
     accgcttcac ggtcattctc catagtaggg atcgactttt ggggtccgat ctacctcaag      4980
     ccacgccatc gtagagacgc accaccaaag gcctacgttt cagtattcgt atgcttcagc      5040
     acaaaggctg ttcacttaga gcttgtagtg gacctcagca cggccaagtt tctacaagcc      5100
     tttcgtcgtt tcatttctcg tcgtggtttg tgcgcagaag tctacaccga caacggcaaa      5160
     aacttcgtcg gtgccgccaa tgagctgcga aagctgttga gcgccgaaga gttccggcat      5220
     gccgttgctg atgagtgttc gagttccgga atccgctgac acttcaatcc tacgcgtgga      5280
     tcccatttcg ggggtttatg ggaagcggcg atcaagtcag cgcagaagca ctttgttcgt      5340
     gttttgggtg accgaaaatt agccttcgac gacatggaga cgcttttggt ccaaattgaa      5400
     ggatgtctga actctcgtcc gttaacgaaa ctatccgacg atccgtcaga tctccaggcc      5460
     cttacgccgg gtcactttct cgttggaacc tcgttacagt ccgtcgagtc ctacgactcg      5520
     attccgatga accgtctcca tcaatggcag cagatccaga agatgcttca ggatgtctgg      5580
     aaacgctggc acgttgaata tttgcaagcg ctgcaacccc gcagcaaatg gatcaaacca      5640
     ccagtagagc tgaaggaaga tcaagtagtt gtcatcgtag acgaaaatca agcgccaatg      5700
     cgttggccca tcgctcgaat ccacaaactc catcccggac gagacggcgt cgtccgcgtc      5760
     gtaacgctac agaccggttc tggtctgctc actcgcccgg tagccaaaat ttgtgtccta      5820
     ccggttccac cgtcgtatga taatcaatca tcccccatca acgaatcgcc ctcgcagtct      5880
     gactaaacgt ttttcctcct gatgaactta gcaccatcgg cttcagcgtg ccaatcaaca      5940
     gcgtaaatac atggaattca aggcccttaa agcgaagggt ccaggtaagg acctttccaa      6000
     gttaaaccac caattcgaat caggcttccg ggtcttattt tttgcatgtc cgtaacctaa      6060
     tcaacactgt agaggactgc aacaaccaac ggattgctac cgaaatactc caccaaggtt      6120
     tggatgaagt tggcgaatgt taatcgtaca aggctctcta tccagagggt ccaggtgagg      6180
     acctgtccat ttcttcttac tctgtaggaa aggcctaccg tttgattcgt tctttgcatg      6240
     tttatcatct acgagatctt cgtcaccagt cgtcgaggcg ttcttcagca gtcgtcgagg      6300
     ttcagaaata gttatttctg cagagggcag ga                                    6332
//
ID   BEL-848_AA-LTR repbase;    DNA;    INV; 591 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 25.07, Created)
DT   10-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-848_AA-I;
KW   BEL-848_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-591
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-591
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2146-2146 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 591 BP; 165 A; 125 C; 125 G; 174 T; 2 other;
     tgttggacat caggtccgtt tatctatggt tggatcgaat gtccactacc aacgtgggca        60
     ctcatcgcgc tccatcaatc ggcgagcggt cagctaacac atggattgga ctgatctgcc       120
     tgtgtgagac gatgttcgca aaatatatca accacatcta cgtcaactat gaccagcata       180
     gacgagagag ggatcattgc atgctatacc tacactgttg gcttcgatca tacactctgt       240
     ccgaggcagt gttgatctat cctccatcat catcgggagc gtaaccttta ctcgggctgt       300
     cctagctgta tcgccgttat tttgttgtgt ttcgtgtagt cagtagttta agttcmaatt       360
     taataaatta agaatatcgg tagttttaag aataaatttg caactatctt cgtcgctcca       420
     ataaactaat gtgttgaagt gcaccagttg aacatcatat gtggcaaaag gaagaaattt       480
     ctagtgcaaa gggaacggcc tgtttgttcc acaaatagac ccacgaaaga acaacagttt       540
     tatacggtga aactgaaatt cacgtctact gttttttkat gctatcgaac a                591
//
ID   BEL-849_AA-I repbase;    DNA;    INV; 5435 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.07, Created)
DT   11-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-849_;
KW   BEL-849_AA-I; BEL-849_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5435
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5435
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. A small internal part is missing (PolyN).
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..1330
FT                 /product="BEL-849_AA-I_1p"
FT                 /translation="MKKLTRERKTLEARLDRVVQNVDALRQDETVEDVELL
FT                 TELDSVEQIWATYLVVHKQMLEICADDEEEEIFKQFEAFDRHIVIVKNSLR
FT                 KQLKRLDFCSTRREATTQDGGDAIKQLAEQQADFFRMMSTHFNASTASTST
FT                 SPTSVAAGSNALPHPDLKLPRMNLPIFSGNILDWPSFYDLFESAVHRNPSL
FT                 QDSQKLYFLKTNLAGEAASLVSHLKIEDANYAPAIAKLKERYNKPLNIAAQ
FT                 HIQRFLTPPAMTSPTEHGLRSLHDMSDEVVRALKAMGREDRDIWLLYILVE
FT                 KLDPDTKQLWCQKKAELEDDEITLERFFKFIDAQSSALSAVKQSRQRPSVA
FT                 VKFVPKPHPRGVSTLVSLTQQSSKANCSYCTKSPHQLYQCGRFNHXXXXVS
FT                 SISSHTFT"
FT   CDS           1200..5432
FT                 /product="BEL-849_AA-I_2p"
FT                 /translation="CLSLSSLLRQTALIALNRPINYTSAADSTXXXXXCRQ
FT                 SHHTLLHDALAPHTAHALTSASPINTTTATTAPSNHSPASQSLISSFNLAS
FT                 NIVDTNVLLLTVTLNVMDQYGRPHACRAVLDCASHASYITKDLCAALGLPS
FT                 ADIDFEFGGIAGSSGYASKGVLVTLSSRSSAYQDVVPCVILEKITSDLPLK
FT                 PVDVTDWPIPNSIHLADPQFNHPGKISMLLGNKLFFQLLEPGTISLSPDNS
FT                 LPVLQNTKLGWVFSRAYKEAPQASTVQSSSCFLTVTNDTLSQQLHQFWQLE
FT                 EFVNPKPQLSEEEVRCEQHFATHTTRDSAGHFTVRLPFSERPSTLGESREI
FT                 AAKRLCHIERKLDKNPLLKEQYHAFLREYVSLDHMSLAPTSGSQDCVFLPH
FT                 HCVVKESSSTTKCRVVFDGSSKTTSGRSLNDILMLGPVLQDSLINILLRFR
FT                 FPSVVITGDIQQMYRMIRLHEDDRDYQRILWRWGSTETVKEYRLNTVTYGT
FT                 RSASYLATKCVQQLLLSYQHRYPTTVEKAIKGTYVDDVITGADTAEEAKKL
FT                 RSQLSQIFESGGFHLRKWASNCAEVLDGVPEADIEVKSTIELDDSTTIKAL
FT                 GIHWQPCSDEFKFVFHQPKISQPTKRIILSQIASLYDPLGLLAPIIVMAKL
FT                 VMQKLWELRVDWDANPPGELTNHWLSLVQHLSVLNDFQVPRRVIGIAKPQR
FT                 TYLHGYSDASERAMGACVYIRIVDDAGIVSSHLLCSKSRIAPIGNNRTTLP
FT                 RLELCASVLLARLIANVKDAISEPLFEVHAWTDSQVVLAWLNGGASRWKTF
FT                 VANRVAEIVTHLPAINWEHVDTHQNPADLVSRGVLPEKLRDNPLWWNGPAW
FT                 NPHAGHLRATIANGSSLTQQQVQQIDREQRATAISLIAVYENLFLDNMMAR
FT                 FYPDLQMLQRVTARVLRFRFPDSRGTPRLLPCEMDRAMRVYVKHVQQLNFE
FT                 NELLRLKQNQEVSRHSPLHQLKPMLDEYGLIRVGGRLQHSKLNYDTMHPIL
FT                 LPRQSIFTSLILQHYHAIHHHCGPQTLLAVSRRRFWIIRGASAARKIFRQC
FT                 IICAKAKPVPGSQQMGQLPPERVLPHPPFTVTGVDYAGPISVVGRRSRGVI
FT                 ASKGYIALFICFSTKAVHLEAVSDLSTEAFLAAFTRFSSRYGLPAKMFSDN
FT                 ASNFRSAAHQLRSLYTLVSSAAHNNIVTDFLTNKGVEWRFIPARSPHHGGL
FT                 WESAIKIAKQLLGKLTKNQILTFEELSTFLAQVAATMNSRPITSISSDPSD
FT                 HQPLTPAHFLIGRPLTTIPEVNLLERQINSISRWQFVQRLSQDFRNRWQTE
FT                 YVRTLQRITKWQQSSPNISVGDFVLLLDASEKGKHWPLGRVLETFPGSDGL
FT                 VRVVSIKTSSGITRRDVRKIRSIPLDADEFVPGRYQENEIADRNLVGG"
XX
SQ   Sequence 5435 BP; 1408 A; 1398 C; 1255 G; 1363 T; 11 other;
     tagtggtcct tcgagccgga tccgggacat caagtgtgcg ttttaccata cttttaaccg        60
     ctcccgcgct atcatccgtg aaccggagtt taccgtcggt cgtagtcaat cgttcgcgat       120
     cgtcatgaag aaattgaccc gtgaaagaaa aacgctcgag gctcgactgg atcgcgtcgt       180
     tcagaatgtg gatgcattaa ggcaagatga aactgtggag gacgtcgagc tcctcacaga       240
     gctagatagt gtagagcaaa tctgggcaac atatcttgtc gtgcataagc agatgttgga       300
     gatttgtgcg gatgacgagg aagaagaaat tttcaagcag tttgaagcct ttgatcggca       360
     cattgtgatc gtgaagaata gcctgcgaaa acaattgaaa aggttggact tttgttctac       420
     tcgccgtgaa gctacaacac aagatggcgg agatgctatt aaacagttgg ccgaacagca       480
     agccgatttt ttccgcatga tgtccaccca tttcaatgca tcgactgctt ctacgagcac       540
     cagtcccacc tctgttgctg caggttcaaa tgctttaccg catccggacc tcaagttgcc       600
     ccgtatgaat ctgccaatct tcagcggaaa catccttgat tggccttcgt tttatgacct       660
     gttcgaaagc gccgttcacc gaaatccttc tctgcaggat agccagaagt tgtacttctt       720
     aaaaactaat ctggccggtg aagcagcttc tctcgtgtcc catctaaaga ttgaagacgc       780
     caattatgcg cccgcgatag cgaagttgaa ggagaggtac aacaaaccgc tcaacattgc       840
     ggcacagcac atccagcgat ttttgacccc acctgcaatg acgtcaccca ctgaacacgg       900
     tttacgctcg ctccacgata tgtccgatga ggtcgttcgg gcccttaagg caatgggaag       960
     agaagatcgt gatatttggc tgctgtacat tctggtggag aaattggatc ccgatacaaa      1020
     gcaattgtgg tgtcaaaaga aagctgagtt ggaggatgat gagatcactc tcgaacgttt      1080
     tttcaagttc atcgacgctc agagcagtgc attaagcgca gtgaaacaga gtcgccaaag      1140
     gccttcggtc gccgttaaat tcgttccgaa gcctcaccct agaggggttt ctacgctagt      1200
     gtctctcact cagcagtctt ctaaggcaaa ctgctcttat tgcactaaat cgccccatca      1260
     actataccag tgcggcagat tcaaccatnn nnnnnnnnng gtgtcgtcaa tctcatcaca      1320
     cacttttaca tgacgctctc gctccacaca cagcacatgc actcaccagt gcctctccca      1380
     tcaacaccac gacggcgaca acggctccgt ctaatcattc tccagctagc cagtcactca      1440
     tctcatcatt taatctggca tcgaatatag tcgacacgaa cgttctgctt ttgactgtta      1500
     ctctcaacgt gatggatcaa tacggtaggc cgcatgcttg ccgcgcagtg ttggattgtg      1560
     cgtctcatgc cagttatatc accaaggact tgtgtgcagc actaggatta ccatcagctg      1620
     acatcgactt cgaatttggc ggtattgctg ggtcaagtgg ttatgctagc aaaggagtac      1680
     tcgttacatt gtcttctcgt tcttccgcat atcaagacgt tgtgccgtgt gtgatactgg      1740
     agaaaatcac atcggatttg ccgttgaaac ctgtggatgt gaccgattgg ccgattccca      1800
     actcaatcca tctggccgat ccgcagttca atcatcccgg aaaaattagt atgctgttgg      1860
     gaaacaaact gttcttccaa ctactcgagc ctggcacaat tagcctcagt cctgataaca      1920
     gtcttccagt gcttcagaat accaaactcg gatgggtatt ttcgagggcc tacaaggaag      1980
     cccctcaagc gtccactgtg caaagcagtt cctgtttttt gacagtcacc aacgacactc      2040
     tctctcagca actacatcag ttttggcaat tggaagaatt cgtgaacccg aaaccgcagt      2100
     tgagtgaaga agaagtgcgt tgcgagcagc attttgcaac tcacacaacc cgtgatagtg      2160
     ctggtcattt taccgttcga ttgccatttt ccgaacgtcc atctactctg ggagagtcac      2220
     gggaaatagc ggctaagcgc ttatgccaca tcgagcggaa attggataaa aatcctctgc      2280
     tcaaggaaca gtatcacgcc tttctgcgcg agtacgtcag cctagaccac atgtcactcg      2340
     cacccaccag tggttcccaa gattgtgtct ttcttccgca tcactgcgtc gtgaaggaat      2400
     cgagctctac aactaaatgt agagtcgttt tcgatggttc aagcaaaacg actagcggta      2460
     ggtctctaaa tgatatactc atgttgggac ccgttctgca agactctctg ataaacatat      2520
     tgctgcgatt tcgtttccca tctgtggtca taactggcga catccaacaa atgtatcgga      2580
     tgatacggct gcatgaagat gatcgggatt atcagcggat tctatggcgt tggggctcta      2640
     ccgaaacagt gaaagaatac cggctaaata ccgtcacata cggtactcgt agcgcatcgt      2700
     acctcgcaac aaagtgcgtt caacaactat tgctttcgta ccagcatcgt taccctacca      2760
     ccgttgagaa agcaatcaag ggaacttacg ttgatgacgt catcaccggc gcagatactg      2820
     cagaagaggc caagaaatta agatcccaac tgtcgcaaat tttcgagtct ggcggatttc      2880
     atttgcgtaa atgggcgtca aactgtgctg aagttttgga cggcgtacca gaagcagaca      2940
     tagaagtaaa atcaacgatt gaactcgacg attcaactac catcaaggcc ctaggaatcc      3000
     actggcagcc gtgcagcgat gagttcaagt tcgtgtttca tcagcccaag atctctcagc      3060
     ccacaaaacg catcatactg tcccaaatcg ccagcctcta tgacccttta ggcttgctgg      3120
     cccccattat cgtcatggcg aagctggtga tgcaaaaatt gtgggagctg agggtggact      3180
     gggatgcaaa tcccccgggt gagttgacta atcattggct ttctttagtg caacatctgt      3240
     cggttctcaa tgattttcag gtaccccgac gagtgattgg catagccaag ccacaacgaa      3300
     cttatctgca cggctacagt gatgcttccg agagggcaat gggcgcctgc gtgtacatca      3360
     ggatcgtcga tgatgctggc atcgtttcgt cgcacctgct ttgttcgaaa tcccgcatag      3420
     cacctatcgg aaacaatcga acaacccttc ctcgcttgga gctttgtgct tcagtgttgc      3480
     tggcccggct catcgcaaac gtcaaagatg ctatcagtga acccctcttc gaagtgcatg      3540
     cttggaccga ctcccaagtt gttctagcgt ggctcaacgg tggcgcctcc agatggaaaa      3600
     catttgtggc taatcgcgtg gcggagattg tcacacatct cccagccatc aattgggaac      3660
     acgtcgatac tcatcagaac cccgctgatc tagtatcacg tggggtacta ccagaaaagc      3720
     tgcgagacaa ccctctctgg tggaatggac ctgcctggaa tccacatgct ggtcaccttc      3780
     gagcaacgat agctaacgga tcatctctaa ctcaacaaca agtgcaacaa atcgaccgag      3840
     aacaacgagc gacggcaatt tcactcatcg ccgtttatga aaacctcttc ctcgacaaca      3900
     tgatggccag attctatcca gatcttcaaa tgttgcaacg agtaactgct cgggttcttc      3960
     gctttcgttt tcccgactcc agaggaactc caaggttgct tccatgtgaa atggatcgtg      4020
     ccatgcgagt ttacgttaag cacgttcaac agttgaattt cgaaaacgaa cttcttcgcc      4080
     tgaagcagaa ccaagaagtc tctcgtcaca gccccctcca tcagctcaag ccaatgctcg      4140
     atgaatatgg tttgattagg gtgggcggaa ggcttcagca ctccaaactc aattatgata      4200
     ctatgcatcc aattttatta cctcggcaat caatattcac ctcattgata ttgcagcatt      4260
     accatgccat tcatcaccac tgcggaccgc agaccttgct agcagtatct cgaagacgat      4320
     tttggataat acgcggagcc agcgcagcca gaaagatatt ccgccagtgc atcatctgtg      4380
     caaaggccaa gcctgttcct ggttcacaac aaatgggaca gcttcctcct gaacgtgtcc      4440
     tgccacatcc accattcaca gtgaccggtg tggattacgc agggcctatc agtgtcgtag      4500
     ggcgtcgatc ccgtggagta atagcaagca agggatacat agcgctgttc atttgcttct      4560
     caacgaaagc ggtccatttg gaggcggttt cggacctgag tacagaagct tttctggcag      4620
     cattcactcg tttctctagc cggtatggac tgcctgctaa aatgttttcc gacaatgcgt      4680
     cgaattttcg atctgcggcg catcagcttc gcagtcttta cacgttggtc agttcagctg      4740
     cgcacaacaa catcgtcact gattttctga cgaacaaggg agtagagtgg cgattcattc      4800
     cagcgagatc accacatcac ggcggcctat gggagtccgc aatcaagatc gccaagcagc      4860
     tacttgggaa gctcaccaag aaccaaattc tcaccttcga agagttgtct acctttctag      4920
     cgcaagtggc ggccacaatg aactctaggc caattacatc aatttcttcc gacccaagtg      4980
     atcatcagcc tctcactcct gcccacttcc ttattggtag gccactcact accattccgg      5040
     aagttaatct gctggagcgt caaatcaact cgatatctcg ttggcagttc gttcagaggc      5100
     tttcacaaga cttcagaaat aggtggcaaa cagagtacgt tcgtaccctc cagcgaatca      5160
     cgaaatggca gcagtcgtca ccgaacattt ctgttggtga tttcgtattg ctactggatg      5220
     ctagcgaaaa ggggaaacac tggcctttag gtcgagttct ggaaaccttt ccaggatcag      5280
     atggattagt tcgagtagtg tcgatcaaaa cttcctctgg cattactcga cgtgacgtaa      5340
     ggaaaatacg gagcattccc ctcgatgcag acgagttcgt accaggaaga tatcaggaaa      5400
     acgaaattgc tgatcgcaat ttggtgggcg gctta                                 5435
//
ID   BEL-849_AA-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.07, Created)
DT   11-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-849_AA-I;
KW   BEL-849_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-279
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-279
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2147-2147 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 279 BP; 71 A; 71 C; 46 G; 83 T; 8 other;
     tgtcggcgca gaattcgtkg acggcccaca tccacacaka taaactgaat ctctctctam        60
     attttgtatg aacttgcact cactctctac awataccaca cactcgaatt gttgaagcac       120
     tacacatttg atcmtattcc tgagatwaat aaattagtta tattgaattc gttaaaccgt       180
     acgcacgttt ttcaatttcg cwccgaatcg gattgggaaa tcgttctccg gttttccgta       240
     cwgtttcgcg aaccgttcgt cgtactccgg gctccaaca                              279
//
ID   BEL-84_AA-I repbase;    DNA;    INV; 5725 BP.
XX
AC   supercont1.284;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-84_AA_;
KW   BEL-84_AA-LTR; BEL-84_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5725
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.284; Positions  100463  106187.
XX
CC   Positions [4688-5269] - Integrase core
CC   'TAATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           552..1805
FT                 /product="BEL-84_AA-I_3p"
FT                 /translation="MAEERSRQQLINRRTTLIAALGRAEQFVEKYVAERDR
FT                 GQVKLRLENLDTVWMGLEEVQTQLEDMELTNQGMAQNLTFRSHNETRYFQI
FT                 KAALQSFLPNVPPTTNAIPQSSTSGLSGIKLPTISLPEFDGDYNQWLPFHD
FT                 TFVALIHSNPEVHDIQKFHYLRAALKGEAAQLIESIGISSVNYAIAWQTLV
FT                 SRYANDYLLKKRHLQALLDCPRMKKESATALHSVVDEYERHTKTLRQLGEP
FT                 IDSWSTMLEHLLCLRLDDNTQKAWEDFATTATNPDYSCLIDFLQRRIRVLE
FT                 SMSVNHQAQPKSNQQPTMFRRPPFHKTVSHAVTETTSRKCYSCDQHHPLFQ
FT                 CPRFEKMSIADRLKVVNEHHLCLNCFRQDHLARNCQSKFSCRHCKKTTPFI
FT                 ATPRLPPTKCRSTIHHLAHSSIHT"
FT   CDS           1630..2676
FT                 /product="BEL-84_AA-I_1p"
FT                 /translation="MNITSASIAFVKTTSLVTANRNSPVVIVKKRHHSLLH
FT                 PGYHPLNADQPSTTSHTAAYTPKPIVKQDAIINSTKRSPTSMNAVTAQTTH
FT                 SSQTSNANVLLSTVVLMVLDCNGQKHPARALLDNGSQSNIISDRLCQLLRL
FT                 KRRKINIPVFGVGESSSSVNHSVSATIQSRNSDFELGLDFLVMPRITIDLP
FT                 VVSSPAEGWHVPNDLPLADPTFNKTGAIDMLLGAEHFFTYVNPGTRIEEGV
FT                 NPALIQSVFGWIVTGRDQKPLRSPPVACHVSLSDPLHEALERFWRIEEVEN
FT                 QPNYSVEEQQCETHYSSHVSRTPEGRYIVRLPRRENFDHMLGESKSAALRR
FT                 FHLLEK"
FT   CDS           3026..5620
FT                 /product="BEL-84_AA-I_2p"
FT                 /translation="MPHCNESSGDFIRTTQLKPMSWQQLTTGWLHPHSWPL
FT                 EGTSNNPKVLDGLDPSQIGTQPTLKLDNNESTKALGVSWEPGTDKLRFDSA
FT                 PELGNGPPTKRSILSAVSKHFDPLGLTAPIVIKAKMLLQELWLQPCGWDEE
FT                 ISDSMRAKWDSYRTELPKIVSYRTDRFAFLPNASVQLHTFADASQQAYGAC
FT                 IYARSTDSHGKTKIQLIAAKSKVAPLKRISLPRLELSAAVIAARLHQKVVI
FT                 ALDMKISASFFWSDSTVTLEWLRSPPYTWNTFVANRVSEIQNTTQGSSWHH
FT                 VAGKHNPADLITRGMKMDDFLNSDLWHCGPLWLKYLETAWPVTMGQLSAPE
FT                 DVLERRKMVAAIQNKPVANPIFNTSSSYNRLIRVTAYCLRFVNACRRKVSM
FT                 SSQPELDSIPKSITVGEMSIARMILIKLAQTDAFSEEIRYLGKGKPVSKHS
FT                 SLRLLSPFVDPDGILRVGGRLRLSEQPYLTKHPILLPSSHPLTRLVAKHYH
FT                 LRLFHGGGRVTLAAIRQEYWPIQGRRVVNTVMRNCYRCARASPVPAKQQTG
FT                 QLPMQRVTPSRPFSITGIDYAGPVYLRAIHKRASPTKAYISVFVCFVTKAV
FT                 HLELVSDLSTPAFITALRRFIARRGCPAHMHSDNGKNFEGARNELRELYQL
FT                 LQEEESSGNVATFCANQGIQWHMTPPKAPHFGGLWEAAVKVAKRHLHRQFG
FT                 DSRLSFEEMSTALAEIESAMNSRPLTPLTEDPNDLAVLTPAHFLIGTTPSA
FT                 IPEDDCSQIPINRLDHYRGLRHRVQQFWHQWQAEYLHELQKESKHIIPNTE
FT                 IQPGRMVVVVDEFLAPVKWPLARIVIPGPDGLIRVVDLRTSRGIIRRPITK
FT                 ICLLPFEDTNDA"
XX
SQ   Sequence 5725 BP; 1536 A; 1643 C; 1196 G; 1350 T; 0 other;
     acttggtgcc gtgaccagga tcaggtttct tcccagaatt cccgccatca tactacggac        60
     gccgacgcta tctaccgcca tcgttccgca ccattgtgga ccccgacggc attcataaga       120
     tcgccatctt ccccggatcg tattgtgccc acccgccatc gagaagcttc tccggagttc       180
     ccgattgaat tctttaatac aaggcctaat tcaattaggc actcggtacg tataattccg       240
     aagtgcgcag aagtttaccg cgggtgcctt gagatttttt cctgtttttc tcctattcgt       300
     tccggagttt tcgccgaacc ttctggaacc gttcagctgt cgctgctagc aagtaagcta       360
     cgccattgcc atccgtatac cgattttcat ccgaggacct actacgccgg attcgcaagc       420
     agattcgaat aaaatacaag gcttaaatct agccttgaga aggttagtac cgttcctaca       480
     tccctactcc gcttgtccgg ctctaccggg tctttctctg tatctcctat ccagtgcaac       540
     ccgactccgc aatggcggaa gaacgttcga gacaacagct tatcaaccgc cgtaccactc       600
     tcatcgctgc gctgggacga gcagaacagt ttgtcgagaa atacgtggcg gaacgggacc       660
     gaggccaggt gaaactacgt ctcgagaacc tcgataccgt gtggatggga ctagaagaag       720
     ttcaaaccca actcgaggac atggaattaa ccaatcaagg tatggcacaa aacctcactt       780
     tccgttccca taacgaaacc cgctatttcc aaatcaaagc tgctctgcaa tcattcctcc       840
     ccaatgtacc tcctacaacg aacgcaatcc cccaatcgtc tacttccgga ctgtccggta       900
     tcaaattgcc aaccatatcc ctaccggagt ttgacggcga ttataatcag tggctaccat       960
     tccatgatac attcgtcgcc ctgattcatt ccaatcccga agttcacgac attcaaaaat      1020
     tccactatct ccgcgctgct cttaaaggag aagcggccca actcatagaa tcgatcggta      1080
     ttagctccgt caactacgcc attgcatggc aaaccctcgt ctctcgctac gctaacgact      1140
     accttcttaa gaaacgccac ttgcaagccc tcctcgattg cccgcgaatg aagaaagagt      1200
     ccgccactgc acttcattca gtcgtcgacg aatatgagcg tcacactaaa accctccgtc      1260
     aacttggtga accaatcgat tcgtggagca ctatgttgga gcatctccta tgcctccgac      1320
     tcgacgacaa cactcaaaag gcttgggaag acttcgctac gacagccaca aaccccgact      1380
     acagttgtct cattgatttt cttcagcgac gcatccgcgt acttgaatcc atgtcggtga      1440
     atcaccaagc gcagccaaaa tccaatcaac aaccaactat gtttcgccga ccaccgtttc      1500
     ataaaaccgt ttcccatgct gtaaccgaaa ccacttctcg aaaatgttac tcttgcgacc      1560
     aacaccatcc actcttccaa tgtccacgat tcgagaaaat gtccatcgct gatcgcctca      1620
     aagttgtcaa tgaacatcac ctctgcctca attgctttcg tcaagaccac ctcgctcgta      1680
     actgccaatc gaaattctcc tgtcgtcatt gtaaaaaaac gacaccattc attgctacac      1740
     cccggttacc acccactaaa tgccgatcaa ccatccacca cctcgcacac agcagcatac      1800
     acacctaagc ccatcgtcaa gcaagatgct ataataaata gcaccaaacg atcacccaca      1860
     tccatgaatg ctgtcactgc ccagacaacc cattcctcac aaacatcaaa cgcgaatgtt      1920
     ttgctttcga ccgttgtgtt aatggtgctc gattgcaatg gacaaaaaca ccccgcacga      1980
     gcgttattgg ataatggatc gcaatccaat atcatcagcg atcgtctatg ccaacttcta      2040
     cgactaaagc ggagaaaaat caacatccct gtgttcggtg tcggtgagtc ctcctcgagc      2100
     gtgaatcact ccgtcagtgc cactatccaa tcgagaaatt ctgacttcga actcggactc      2160
     gacttcctcg ttatgccccg cattacgatt gacttgcctg ttgtgtcatc tcctgccgaa      2220
     ggctggcatg tcccaaatga tctccctttg gctgacccta cctttaacaa gaccggcgct      2280
     atcgatatgc tcctcggagc agagcatttt ttcacctatg tcaaccctgg tacccgtatc      2340
     gaagaaggtg taaatcccgc cctcattcaa agcgtgtttg gttggattgt caccggtagg      2400
     gatcagaaac ccctcagatc gccccccgta gcatgtcacg tctcactttc cgatccactc      2460
     catgaagcac tagagcgctt ttggcgcatc gaagaagtcg aaaatcagcc aaattactcc      2520
     gtagaagaac aacaatgcga aacccattac tcgtcccatg tttcccgcac tccagaggga      2580
     agatatatcg tccgtctgcc tcgccgggag aatttcgatc atatgctcgg cgaatcgaaa      2640
     tccgcagctc ttcgacgttt tcatttactc gaaaaatgac tgggcagaga accacatctg      2700
     aaggatgaat atcactcttt cttgtcggag tacctgtttc tcggtcacat gcgacttgtc      2760
     ccaccaagcg aaatcgaacc acatcaggtg cactatttac cccaccatgc cgtcctaaaa      2820
     gaggccagta ctacgacaaa agtccgtgta gtgttcgatg gatcggaaaa aacatccacc      2880
     ggatattccc tcaacgatgc cctccaagta ggtccaattg tgcaggacga actattgacc      2940
     ctcattatca gattccgaaa atatccgata gcactggtcg cggacatagc aaaaatgtac      3000
     cggcaggtgt tactccatcc tgacgatgcc ccattgcaac gaatcctctg gagatttcat      3060
     ccgaacgacc caattgaaac ctatgagttg gcaacagtta actacgggtt ggctccatcc      3120
     tcattcttgg ccactcgaag gaacatcgaa caatcccaaa gttttagatg gactcgaccc      3180
     atcacaaatt ggtacccagc caaccctgaa attggacaac aacgaatcca cgaaggcact      3240
     tggagtgagt tgggagccag gaaccgataa actgcgcttt gattccgctc ccgagcttgg      3300
     aaacggcccg cccacaaaga ggtcaatttt atcagcagta tcgaagcatt tcgatccgct      3360
     gggactcaca gctccgatag tcataaaagc caaaatgcta ctgcaggagc tctggctgca      3420
     accctgcgga tgggacgagg agatttctga cagcatgcga gcaaaatggg acagctaccg      3480
     caccgaatta ccgaaaatcg tctcctaccg aactgaccgt tttgccttct taccaaatgc      3540
     ttccgtccaa ttgcacacat ttgcggatgc atcccagcaa gcctacggcg cttgcatcta      3600
     tgcgcgatcc accgactccc atggcaaaac taagattcag ctgattgctg ccaaatctaa      3660
     ggtggctccc ctaaaaagaa tttctctccc ccgattggaa ttgtccgctg ccgtcatcgc      3720
     tgcacggctg catcaaaaag tggtcatagc actcgatatg aaaatctccg catccttctt      3780
     ttggtccgat tcgacagtca ccctggaatg gctacgctca cctccgtaca cctggaacac      3840
     ctttgttgcc aacagggtct ccgaaattca gaacaccaca cagggatcta gttggcatca      3900
     cgtcgctggc aaacacaatc ctgctgatct tatcaccaga ggaatgaaaa tggacgattt      3960
     ccttaacagc gatctgtggc attgtggacc attgtggctg aaatatcttg aaacagcatg      4020
     gccagttaca atgggacagt tgagtgcacc tgaagacgtt ctggaacggc gaaagatggt      4080
     ggcggcgatc caaaacaaac ccgtagcgaa tccaatcttc aacacgtcat cctcctacaa      4140
     tcgcctaatt agagtgacag catactgtct tcgctttgtc aatgcttgcc gacgcaaagt      4200
     gtcaatgtcg tctcaacccg aattggattc aataccaaaa tcgatcactg tgggagaaat      4260
     gtcgatagcc cgaatgatac taatcaaact agcccaaact gatgcgtttt cagaagagat      4320
     aaggtacttg gggaagggga agccggtatc caaacattca agcttgcggc tattgagtcc      4380
     gttcgtcgat ccggatggaa tcctcagagt cggaggtaga ttgcgtctat ctgagcagcc      4440
     ctatcttacc aaacacccca tcctccttcc tagttcccat ccacttacac ggttagttgc      4500
     caaacattac cacctaagat tgttccacgg tggcggccgt gttacactag cagccatccg      4560
     ccaagaatat tggcccatac aaggacgacg tgtagttaat accgtcatga gaaactgcta      4620
     ccgctgtgct cgtgcatcgc ccgttcccgc caagcagcag actggacagc ttccaatgca      4680
     gagagtcacc ccgagtcgtc cgttctccat cactggcata gactacgccg gaccagtcta      4740
     cttaagagcg atccacaagc gagcatcacc gacgaaagct tacatcagcg tctttgtctg      4800
     cttcgtcacc aaagcagtac accttgagct tgtcagtgat ttatccaccc cagcattcat      4860
     caccgcactc cgaagattca tcgctcgtag aggttgtcct gcgcatatgc attccgacaa      4920
     cggaaaaaac ttcgagggtg ctcgaaatga actgcgagag ttgtatcaac ttctacagga      4980
     ggaagaatcg tccgggaatg tcgccacctt ctgcgcaaac cagggcatcc aatggcacat      5040
     gactccaccg aaagccccac acttcggtgg attatgggag gcggcagtga aggttgccaa      5100
     aagacacttg caccggcagt ttggcgattc aagactttcc ttcgaagaaa tgtcaacagc      5160
     actagcagag atcgagtctg cgatgaattc acgtcctttg acaccgctca ccgaagatcc      5220
     aaatgatttg gccgtcctca ccccggcaca ctttctcatt gggacaacgc cgtctgctat      5280
     ccccgaagat gactgcagcc aaattcccat aaatcgcttg gatcattacc gaggtcttcg      5340
     tcatcgtgtc caacaattct ggcaccaatg gcaagcggaa tatttacacg aactgcaaaa      5400
     ggagagcaaa cacatcatcc cgaacacaga gatacaaccc ggaagaatgg tcgtcgtcgt      5460
     cgatgagttt ctcgctcctg tgaagtggcc gttagcgaga atcgtcatcc ctggaccaga      5520
     tggactcatc cgagttgtgg acctgcgaac cagcagaggg attatccgtc gccctatcac      5580
     caagatttgc ttgctgccct ttgaagatac gaatgatgcc taaaattctg atgtcaacaa      5640
     aattgtatca ttgaattcct tgaatgaatt ggtttgttat gataggagtc aggtagtgaa      5700
     attcaggaat ttcaggtggc ggcga                                            5725
//
ID   BEL-84_AA-LTR repbase;    DNA;    INV; 373 BP.
XX
AC   supercont1.284;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-84_AA_;
KW   BEL-84_AA-I; BEL-84_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-373
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.284; Positions  100090  100462.
XX
SQ   Sequence 373 BP; 120 A; 70 C; 79 G; 104 T; 0 other;
     tgacagttct caaaactgga agctgcttaa agcaggtatg ccatgctgtt agtgagactg        60
     acagcagcct gaaatattta aatttatggt agttttttat ggtatattca aaatggaatt       120
     atttcacaca acgtagggtt aaaagtagat gtaagacaat aaattttagt cagttgaaat       180
     cgaacattcg agaaataaag ttatcctttc taaacgcaaa taaagtgagt tgaagtgcca       240
     gaaaagttaa aaagttgttt aagtggtgaa tcttgtggtg cccaattccg tcgatagtga       300
     ccaccccggt agtgtcctac cctgtccgtg tgtgagccca atcccagccg gaaaccacga       360
     tcctgcccca aca                                                          373
//
ID   BEL-850_AA-I repbase;    DNA;    INV; 5892 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.07, Created)
DT   11-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-850_;
KW   BEL-850_AA-I; BEL-850_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5892
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5892
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2126-2126 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 5892 BP; 1791 A; 1205 C; 1567 G; 1329 T; 0 other;
     tactcaaaaa caattgtatc agatttggat taacccttga cgcaccatgg ccgatccaaa        60
     tgcaataaat ctggatttca cagagactgc gtgtgcggct tgcgacgatg tttctaccga       120
     gaacgagcga atgatcggat gcgacggttg tcagctgtgg ttccatctcc gctgtgtagg       180
     actgtctacc gaagatgcgg agaagaagaa aaagtggtac tgcgctgatg agaaatgcca       240
     acaagcgaag aagaagaaga agaagaaccc cacgaagaag agtggtgaag attcagaccg       300
     ttccagcgtc aaatccgacg cagtgctcac cttggagcaa aagctgaaag cgatggagga       360
     aggccaaaag cgaatggagc aagagctgga agcggaaatt attttgaagc gcagagaaag       420
     tgaaatcaag cgttccctag aaaggaagcg aatgatgctg gagaagctgg ttcgtgatga       480
     ggaggaagaa caagagaagc aattgcagga agaagttcta cgggagcgta ggttgcagtt       540
     ggaacgtatg agggcccgac aacaaacatt cgaagacaat atgttggcat tggacaacga       600
     aatggctaaa ttgaaaagtt ctggggataa acataagatt cgtcgtgacg ctgaagtggg       660
     ggagagtgta tccaaaatga accatacgcc gttgcgtaat ccagaggttg gaaagctgac       720
     tgagcaaaat atgaaaaatc tgaagttcga cgaatccgat tcggactccg aaatcgacaa       780
     cgaagacgac actggcgatg attccggaac tgccgacagt gaatctagcg atgaatcccg       840
     tgctccgtta actttgaaag gtgggaaagt gtcgagcggt aaggaaaagc gcaaaaccga       900
     tgatttgtgt caacatggac aaggaaagtt gcagaacgca cctaccaaaa tgcagttagc       960
     agccagaagt ggaataagca aaaagttgcc aacattttcc ggccaaccag aagaatggcc      1020
     actgttctac gggatgtatg tagcatcgaa tgaagcctgt ggatacactg acgtggaaaa      1080
     tttagtgcga ctgcaagaat gcctgaaggg tccagcgctt gagatggtcc gtggtcagct      1140
     gctccttcct aaatcagttc caaaggtgat tgtaaaacta cgccaactgt acggtcgacc      1200
     ggaacaacta ttacagagcc atcttgaaaa ggttcgccga ttggaatctc cgaaaacagg      1260
     aaaacttgct agtttcatcc catttggtac tgcggtcgag caactctgcg agcatctgga      1320
     agcagcagag ctaaaacaac atttagtaaa tccgttactg atccaagatc tggtagataa      1380
     actaccggac agtgacaagc gggagtgggt gcgcttcaaa cgcggtagaa agaaggtaac      1440
     gcttcgtaca ttcaccgatt tcctatccga aattgtgtcc gaagcatgtg aagcgaacgt      1500
     tagtttggaa tacaaaccag caaataagct cggcggcgaa ggacgctccg aaacaggaag      1560
     tagaaggtcg aaaggtacaa tgttcagtca tagtgaaggg gagactctac cgacaaattt      1620
     acaaactgga ggagaagaac gaaggaactt gaagtcttgt aaagtgtgtc agcgaacaga      1680
     tcatcggctg cgatactgcc aagacttcag aaatctggca catgcggatc gaataagaat      1740
     cgtcgagcag tggaagttgt gtagagtatg tttgaacgag catggaacgg ctccctgtaa      1800
     gttcaagttg cgctgtaatg ttggagactg tcgacaggcg cataattcgt tacttcaccc      1860
     catggacagc gtggtcggta ccagcgcaca tattcgaaca aacagcgtga tgatgtttcg      1920
     aatgattcca gtccgtctac actgcggcga taaaactatc accgtcttag cgtttcttga      1980
     tgaaggtgcc tcggtgacac ttgtggagcg gaaactcgcg gatcgtttgg gagtagtcgg      2040
     agttcacgag aagctcacca ttcaatggac ggcagatata gagcgagaag agcgtaactc      2100
     tacgaggacg aatatatggg cttcatcaga aggaacggaa gagaagatgt tgttgaccac      2160
     agtgcacacg gtcaataaac ttatgttgcc agcacaatcg ctggatgcca aggaactgag      2220
     tcttcaatac gagcatttgc gaggcttaac tatctcctct tacagtggac ggccggagat      2280
     gctaatcggt ctaaataatt tgcattattt cgctccactt gaggcaaaaa taggcgcagt      2340
     tatggaacca attgcagtac ggtgtaaact cgggtggacg gtttacggac cgagacggac      2400
     gactaccgca gcagcgacta ccggcatcgt gaacttgcat caaaatatca ctaacgaaga      2460
     tctccatgat ctgcttaaga accattacgc tgttgaggaa tctgtggtgg cagtgaagct      2520
     agagtcagca gaagacagga gagctcgtga aatcttggag tgtaccacta aacgaatcgg      2580
     aaaccggttt gagacaggcc tactgtggaa aacagacaat ccgtcattcc cagacagtta      2640
     tccgatggcc ctacgccgtc taaaacaatt ggagaagaaa ctggagcata gtccggaact      2700
     gcgagagaac gtcgtcaagc aaattggcga gtatcaagaa aagggctacg cgcatttagc      2760
     tactccagaa gaacttgcta ccacagagcc aggaaaacta tggtatctcc cactaaatgt      2820
     tgtgctcaat ccaaaaaaac ctggcaaagt acggctcatt tgggatgccg cggcagccgt      2880
     taaaggaacg tctctaaacg cacatctgct gaaaggaccg gatatgctgg ttcctctgat      2940
     aactgtttta tcaggattca ggaaacaacg aatcgccata ggtggagatc tccgtgagat      3000
     gtatcaccaa atcaagatcg tcaatcaaga caaacagttc cagcgcttcc tttttcgaga      3060
     gaaccctaaa gaacctcctc gcgtgtatgt tatggatgtc gcaacatttg ggtcgacgag      3120
     ctctccgtgt tcggctcagt atgtgaagaa caggaatgca gaggaatacg ctggacagtt      3180
     tccagaggca gctacagcaa ttatcaaatg ccattatgta gacgattact ttgacagtgt      3240
     tgacacagtt gaagaagccg tcgtgcgtgc aaaggaagtc agttttgtgc atcagaaggg      3300
     cggttttgaa attagaaatt ggatttcgaa ttcaactgaa gtgcttgata gtttaggtga      3360
     acaaaaaccg gtttctactg tacatttcac tgaagataag acgacggcac aagagcgagt      3420
     gcttggaatg atctgggatc caatatcaga cgagttttcc ttctctacaa aacatcggga      3480
     acagcatcaa ccatacttca acggtgaaga acggccgaca aaacgagcag tgctgagctg      3540
     tgtaatgggt tttttcgatc ctctcggatt gattgctccg ttcacgattc atggcaagat      3600
     cgtagtgcag cacttatggc gtagtggctg tgaatgggac caggttatcg acgacaactg      3660
     ttgggatatg tggcagcgtt ggactggtct gctaacagaa gtggaaaacg ttcgcattcc      3720
     ccgatgctac cttggaaatt cttcatcgtc cgacgtggaa tccattgaag cacatatttt      3780
     cactgacgcc agtgaacacg catacggctg tgtagcgttt ttgagagtta tcgtgagagg      3840
     agtagtccga tgttctttgg ctatgtctcg atcgaaagtg gcaccgctga aacgacagtc      3900
     aatcccacga ttagaactaa tggcagctgt tcttggtgct cgaatgagtc gaacaatatt      3960
     ggacacccat tcgatgaaaa ttgatcggtg tgtgttatgg acggattcgc gaacggttta      4020
     cagctggatc cgatctgacc aacatcaata tagacaattt gttgcgttca gaattggaga      4080
     gatactcgag ttaacaagat caacggactg gcgatggatc ccgactaagc agaacgtggc      4140
     ggacgtacta acaaaatggc atcgtggtac actgaacagt gacggagaat ggtttaaagg      4200
     tgcgtcgttt ctttacctac cagaagatca ttggccgact atcgaagctc cagtagaacc      4260
     gacaaacgta gaagcgaagg gtttcgtagc atctcatgtc gttgttgacg tcgatcggtg      4320
     ttctaggtgg acgaaactcc aaagagtgac agcgttcgta gttagattta tcgacaactg      4380
     caagcaaaaa gtagcagcgc agccagtata acagtgaaag ctacaaaaaa atcaacaagt      4440
     caagattctt gcagaaatac catcaataca gcgtccgtta gagcaagagg agttccgcag      4500
     ggcggagatc atactctgga gacaagcaca acatgagggt tttccagatg aaatgagcat      4560
     cttatcacgg aacattacga agagatctgg agagcctttc gaagtagtga agaagtcgag      4620
     ctttctttac aaactaacac cgagactgga tgaagaagga gtccttcgaa tgggtggcag      4680
     aatggagatg tcggagaata taccgtttga taaaaagttt ccaatcatcc tgccacggaa      4740
     gaatgcgacg acagaaaagt tgatccagca ctatcatgag aagtttggtc acggtaaccg      4800
     agaaactgtt gccaatgagc tgcgtcaaag atattggatt ccaaatattc gaaccgcgat      4860
     tcgacaggta gtgaatgaat gtgtttggtg caaggtacgt cgatgttgtc ctcagccgcc      4920
     tattatggct ccgctcccgg tttcacgaat aactccaagt cttcgtccat ttcattcggt      4980
     gggtattgat tatttgggcc caatcgacgt gactgttgga cgcaggaagg agaaaagatg      5040
     ggtggcggtg ttcacttgca tggcagttcg tgccatacat ttagaagttg ttgcaagcct      5100
     ttctacacaa tcatgcctaa tggctataag aaggttcagt tgtaggagag gtgtcccagg      5160
     agagattttc tcagacaacg cgacgtgctt taaaggtgct aacaacgaaa tgcagagaat      5220
     atatgcggaa tgtgcagaca aggttgtaag ttcggcgaca gcatggcact tcaatccacc      5280
     agctacacca catatgggtg gtatctggga gcggatggtc agatccgtta aggcagcttt      5340
     gaaagcgttg gatgatggac gatcattttc agacgaggta ctactgacga cactagccga      5400
     agcagaagat atgataaacg ctagaccgtt gacatacgta ccacaggaat cagcagatga      5460
     ggaagcgatc acaccaaacc atttccttcg tgggttggtc acagcaaccg atatgatagt      5520
     agataatact gtacacacaa cagataatct acgtgatgcc tacaagcgtt cgcagaaact      5580
     ggcgaacgaa atgtgggaga ggtggtgcaa agaatattta ccgactatta acagacgaac      5640
     caagtggttc caagagacga agccgctgca agtaaacgac ttggtgtttc tcacggatgg      5700
     taaaaatcgg aagagctgga taagaggaat tgtagaagaa gtgttgcaag gaccggatgg      5760
     acgagtaaga caagcgatcg tacggacggc tcaaggagta taccggcggg cggtggccaa      5820
     cttagcggtg ttggagatct gaaagtaaat cctgcgaacc tcaaggaatg caggatgtta      5880
     cgggtggggg cg                                                          5892
//
ID   BEL-850_AA-LTR repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.07, Created)
DT   11-DEC-2018 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-850_AA-I;
KW   BEL-850_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-723
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-723
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2152-2152 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 723 BP; 292 A; 91 C; 145 G; 195 T; 0 other;
     tgttaatacc gcaaatgttg cccagtgtac ttaccaacac tgccgagcaa tgatggatgg        60
     gtttgcctac tctaccttta catcctggtt attgttcgcc gctgttttag taggtaaata       120
     gagaagaggg catagaaaaa gcaaaacaaa aataagtaaa aaatagctag aaaaatcggc       180
     cattaggaaa gtgcgataga ttgattaaag tttttaatta aaataattca gtgaaattca       240
     gagaatagca acagtgtgga agcttgagga gttgtattta cagcacagta aaacataatt       300
     gagtaagata tatgacatta ttatcgactt tattgagcta attaattgat tgattaatga       360
     attgaattca aggttgctat ctctaccaag ctgtccggga aggctgtgac ctgaaaaata       420
     agaaaaagaa gattaaaaaa ctgtatgatt gtaagtaata agaaaataat tgaattagaa       480
     tacaaaaaga aataataatt ttgcgaacat aaacaggagc agaatatcaa aataaacagt       540
     agaagttgct ggatgaagga ttgctctacg gaaacggtgg tgtcgaaaaa ggaaagttag       600
     aaaccaattg ttgtaagtag tcgttattat gaaataattg tgaaataact aaaaatataa       660
     aaattacagt ttgagctgct accaagaaaa aggctgcttc aaaaacaggt tcaaatccga       720
     aca                                                                     723
//
ID   BEL-851_AA-I repbase;    DNA;    INV; 6575 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-851_;
KW   BEL-851_AA-I; BEL-851_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6575
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6575
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..4838
FT                 /product="BEL-851_AA-I_1p"
FT                 /translation="MPRDGRNVTSSEGIDKPCKKCNKIEGDDNWVCCDVCE
FT                 TWEHFRCAGVNESIAEKSWKCSDCLTDWDGADDKSKSGVSFNESSVSKSSS
FT                 RASQRLHLSLQHLEEQRKLSKLRAEEELQMKKREEEARLQRLQMEEAAKLK
FT                 QLDEEQEYLKQRYNLLMQLADEKDSSSRRSRVSVNSKRTGVSVKSKRDQLE
FT                 KWLKVAAEGEAGQSKPSSSEQGATLPVHTVSETIQPSGVISGMQLPAVSLQ
FT                 NSSSQVSTHSKVNLLRPPTSEIMGNVPTLAKSFEQLLSSQRGGVSTVPAFS
FT                 ATVAGQFESLVPLQPTTIVSNAALSGMPVLGIRSSNSVSGALPTATSALGT
FT                 VVSAAPIMTSHIGLSGLMPTVYGSHSYYTAAPMGHLASTNAVVSEGPVQAN
FT                 PLLSSQSCAAPQGIPLDTTVGYGNRPVTNPVVTSMIQPPFAAVGSLEPGFS
FT                 GMRISPSVGPSSAQLAARQVMPRELPKFNGDPQEWPIFFSSFKNTTEVCGY
FT                 TDAENLARLQRSLGGSALEAVRSRLLLPASVPYVMETLHKLYGRPEILISS
FT                 LLKKVRSVPPPKSDNLNTIVIYGLAIQNLVDHIVLADQQAHLSNPMLLQEL
FT                 VDKLPTSLKMQWGTFKQGFAIVNLATFNSFMAGLVNVASDLTIDVDSVQNH
FT                 HKQFRSDKPKQREKLFTHANEASGASNQEKESAAERTNAKACSYCGNENHQ
FT                 IVNCSSFKSLDIGARWKAMRQKNLCRLCLVPHRKWPCHSKKECGVDGCRIR
FT                 HHKLLHSGQPSRSDLIETTKPTEAVHHNYHHTKSFSLFRYLPVTLSGNGKQ
FT                 VKTYAFLDDGSSSTLLEETIAVHLGIEGEPDNLWLGWTGKIGRHEKGSKRV
FT                 GVEISGTGKRESFQISNVRTVRELGLPSQCLNYSELSKDYPHLRGLPVCSY
FT                 TNAKPGIIIGIEHVHLLTSLKVREGGKNDPVAAKTRLGWCVYGRNSGNEGT
FT                 VEQLNLHLEQEMNNSDLYDSMKKFFAVEEAVVVKPVESEQDQRARRILEAT
FT                 TVRRGSRVETGLLWRKESIHFPESYQMAMSRLRGLEKRLSRDSELRRRVNE
FT                 QIDSYEQKKYITKASTEEVASLNPHRVWYLPLGVVINPKKPNKIRMVWDAA
FT                 AKVGGVCFNDMLLKGPDLLVSLMEVLLRFRQGKIAVCSDIREMFLRILIRD
FT                 EDKWSQCFLWRNSPEKDVQVYVINVAMFGSTSSPCTAQFVKNWNASDYSEQ
FT                 YPRAVEAVTKNHYVDDFLDSVDSVEEAVELVKQVQEIHSAAGFELGKILSN
FT                 EKEVLERLGESSSAISKPLPVDKDGAYERVLGVIWVPSEDIFTFSQHGVEE
FT                 VLGHESVIPTKRQVLRIVMKLYDPLGFVAHFVVQGKILMQEIWRTGTNWDE
FT                 PIAAQLHDLWMRWIEQYRKIDEVSVPRCFFSKFHPQQVNDIQIHVFTDASV
FT                 SACACVAYLRVTVDGESQCSLVAAKTKVSPLRALSIPRLELQAAMMGSRLL
FT                 QNICSALTVNIQTRYLWTDSATVLTWLRSDSRRYHQFVSFRVGEILSLTSV
FT                 NEWKF"
FT   CDS           4825..5355
FT                 /product="BEL-851_AA-I_2p"
FT                 /translation="MNGNSRENVADDATKWSAGPSFDPNCRWYQGPAFLQD
FT                 PESQWPSERPEVTVETDAACEEIQFVSVHRTVEQVVDVQRFSNWNRLLRAI
FT                 AYVHRAVAVWKNPSSERKPIRILSQSEFMKAEQSLWRQAQAQAYAEEIYLL
FT                 GDGQNVAKASSIRALSPYLDDLGVLRVGGRIEKAPNIS"
FT   CDS           5359..6573
FT                 /product="BEL-851_AA-I_3p"
FT                 /translation="EAKHPVILPRSHRITYLIVLSFHQRFLHANSETVCNE
FT                 LRQQFYIPRMRTVVRSICRSCQYCKIKKASPAPPLMGPLPKVRLTPFIRPF
FT                 TYVGVDYMGHFEVKVGRSIVKRWICLFTCLTIRAVHLELAHSLSTKSCVMA
FT                 FRRFVNRRGAPLEVFSDNGTNFVGAKRQLSEEMQRMKVINEDCASTFTNAR
FT                 TQWHFNVPAAPHMGGPWERMVKSVKVAMAAISESPHHPSDEVFETIMLEAE
FT                 GIVNCRPLTYVPLDAADQEALTPNHFLLYGSNGVKQPTVTVDQTVTLRDSW
FT                 VIGNNLVDEFWRRWVLENLPMLTRRTKWFENVKPLKPGDLVVIIDEKVRNS
FT                 WERGRILEVFPDKSGQVRRAIVQTARGIFARPAVILAVLDVVGDGRKSDDV
FT                 ASEPEMVHGAG"
XX
SQ   Sequence 6575 BP; 1835 A; 1440 C; 1745 G; 1555 T; 0 other;
     ttctacaaag atttcatccg aagttggatg aaatttgccc atcgcaggtc cctgccgagg        60
     agtactgtaa acaggaagac gtccgtagga agaacgaccc acgattgaag accaaccctt       120
     atcatcgcag ccgacgggga gcggaaggtt tgatagctgt aaaccaagtc agtagaacct       180
     ttattagctt ttttgcaccg cagctgttgc tgctgtagtt tagaagtcat ttaggctagc       240
     tttaaacaac tgaaatttgg ctagttaatt taatcatgcc cagagacggt agaaacgtca       300
     caagttcgga gggtattgat aagccatgca aaaagtgcaa taaaatagag ggcgatgata       360
     attgggtctg ttgtgatgtt tgcgaaacgt gggagcattt tcggtgcgcg ggtgtcaacg       420
     agtctatcgc ggaaaaaagc tggaagtgca gtgattgtct cactgattgg gacggtgccg       480
     acgataagtc aaagtcggga gtgtcgttta acgaatcctc tgtgagtaaa agcagcagtc       540
     gtgcgtctca acggttgcat cttagtctgc agcatctaga ggagcaacgg aagctgagca       600
     agctgcgtgc ggaagaagag ctgcagatga agaagaggga ggaagaggcc agactacaac       660
     ggctacagat ggaagaggca gccaagttga aacaactgga cgaagagcag gaatatttga       720
     agcagcggta taacctgtta atgcagttag ctgatgaaaa ggattcttcc agtagacgga       780
     gcagagtaag cgtaaacagt aaacggaccg gagttagcgt gaaaagtaaa cgtgaccagt       840
     tggagaaatg gttgaaggta gctgcggaag gcgaagctgg acagtcgaag ccatcatcgt       900
     cggagcaggg ggctaccttg ccggttcaca ctgtaagtga aactattcaa ccgtccgggg       960
     taattagcgg aatgcaatta ccagctgttt cgttgcaaaa tagttcgtcg caggtttcaa      1020
     cccattcaaa ggtgaatctt ttgcggcctc ctacatcgga gattatggga aacgtcccga      1080
     cgttggcgaa atcttttgaa caactgctgt ccagtcaaag aggaggagtg tccacagtgc      1140
     cagctttttc agcaacggta gcggggcaat ttgaatcatt agtgccactg caaccaacaa      1200
     ctatagtttc gaatgcagca ctttcgggga tgcccgttct tggaatccgg agctccaact      1260
     cggtttcggg agctttaccc acggctacat cggcgttggg tacagtagtt tctgcagctc      1320
     ctatcatgac gtcgcatatt ggtttgagtg gtctgatgcc tacagtttac ggaagtcact      1380
     cgtactacac ggccgcgcca atgggacatc ttgcgtcaac aaatgcagtt gtatctgaag      1440
     gacctgtcca agcaaatcca ttgctaagca gtcagtcttg tgctgcacct caaggtattc      1500
     cgctcgatac aacagttggc tatggaaata gaccagtgac taacccggta gtaacaagta      1560
     tgattcaacc accatttgct gcagttggat cactagaacc tggttttagt ggaatgcgaa      1620
     ttagtccttc agtaggtcca tcgagtgctc aactagctgc ccgacaagta atgccgcgcg      1680
     agcttccaaa gtttaatggc gatccccaag agtggcccat tttcttcagt tctttcaaga      1740
     atacaacgga ggtctgtggg tacaccgatg cagaaaattt ggcgagattg caacgtagct      1800
     tgggaggatc cgcattagaa gcagttagaa gccgtctact actaccagct tctgtaccat      1860
     atgtaatgga gacgctgcac aagctttatg gaagaccgga gatactaatc agttctctcc      1920
     taaagaaggt gcgaagcgtg ccaccaccta agtcggataa tctgaacaca atcgtcattt      1980
     acggtttggc gatacagaat ttggtggatc acattgtctt ggcagatcaa caggcccacc      2040
     tgtcgaatcc aatgctactt caagaattgg tcgataaact acccacttca ctgaagatgc      2100
     agtggggtac tttcaagcaa ggatttgcga tcgtcaactt ggccacattc aacagtttta      2160
     tggcaggtct tgtgaatgtg gcgtcagatc tgactatcga tgttgactct gttcagaatc      2220
     atcacaaaca attcagatcg gacaaaccga agcagagaga gaagctgttc actcacgcca      2280
     atgaagcatc gggtgcatcg aatcaagaga aggagtcggc agctgaaagg acgaacgcaa      2340
     aagcctgctc gtattgtgga aatgaaaacc atcaaattgt gaactgttcc agcttcaaat      2400
     cattagacat cggagcgaga tggaaggcaa tgcgccagaa aaatctgtgt cggttgtgtc      2460
     tagttcctca tcgaaagtgg ccatgccact caaagaagga gtgtggggta gatggctgtc      2520
     gtattcggca tcacaagctt ctgcacagtg gtcagcccag ccgaagtgat ctgattgaaa      2580
     caacgaagcc gaccgaagct gtacaccaca actaccacca cacgaagtcg ttttccctct      2640
     tccgttatct gccagtaaca ctctctggaa acggaaaaca ggtgaaaaca tacgctttcc      2700
     tggatgatgg atcgtcgtcg acattattgg aagagacgat tgcagttcat ttagggatcg      2760
     aaggcgagcc ggataatctt tggttaggat ggacgggcaa gatcggccga catgaaaaag      2820
     gctccaagcg ggtcggcgta gagatttccg gaactggcaa gcgggaatcg tttcagataa      2880
     gcaacgtacg gacggtgcgt gagttaggac tgcctagtca atgtttgaac tacagtgagc      2940
     tgtcgaagga ctacccacac ctacggggtc tgccagtctg cagttatacc aatgccaaac      3000
     ctggtattat catcgggatt gaacatgtac atttgcttac aagtctgaag gttcgcgaag      3060
     gagggaagaa tgatccagtt gcagcgaaaa ctcgcctcgg ctggtgtgtc tacggaagaa      3120
     attctgggaa cgaaggaact gtagaacagc tgaatctcca ccttgaacaa gaaatgaaca      3180
     acagtgacct gtacgattcg atgaagaagt ttttcgccgt cgaggaagcc gttgtggtaa      3240
     agcccgttga gtctgaacaa gatcaacgag ctcgtcgtat tttggaagcg actacagtgc      3300
     gccgaggatc tagagtcgag actggtttgt tgtggcgcaa ggagagcatc cactttccgg      3360
     agagctacca gatggcgatg agccgacttc ggggactaga gaagcgttta tccagggact      3420
     cagagcttcg tagacgagtt aacgaacaga tcgacagtta tgagcagaag aagtacatca      3480
     ccaaagcatc aaccgaagag gtcgccagtc tgaatcctca ccgtgtctgg tatttgccgc      3540
     taggagtagt gataaatccc aagaagccaa acaaaatccg tatggtttgg gatgcggctg      3600
     cgaaagtcgg tggagtctgc ttcaacgaca tgctccttaa gggtccggac cttctagtgt      3660
     ctctaatgga ggttctgttg cgtttcagac agggtaaaat tgctgtgtgc tccgatattc      3720
     gggaaatgtt cctgcggatt ctcatccgag acgaagacaa atggtcgcaa tgttttcttt      3780
     ggagaaacag tcccgaaaaa gatgtgcaag tatacgtgat taacgttgca atgttcggtt      3840
     ctacaagctc tccgtgtaca gcgcagttcg tgaagaattg gaatgcgtcc gactacagtg      3900
     aacagtaccc tagagcagtg gaagcggtaa ccaagaacca ctacgtcgat gactttctcg      3960
     acagtgtcga ctcagtagaa gaggcagtgg agctcgtgaa gcaagttcaa gagatacact      4020
     cagcagctgg gtttgaatta gggaaaattc tctccaatga gaaagaagta ctggagcgtc      4080
     taggagaatc gagttcagcg atcagtaagc ccttgcctgt ggacaaagac ggagcgtacg      4140
     agcgtgtact cggcgtaata tgggttcctt cagaagacat cttcacattc agccagcacg      4200
     gagttgagga agttctagga cacgagtcgg tgattccaac gaagcgtcag gtgctgcgta      4260
     ttgttatgaa gctgtacgat ccattaggat tcgttgcaca ctttgttgta cagggaaaaa      4320
     tcttgatgca ggagatttgg cgcacaggca cgaactggga cgaacctatc gcagcacagc      4380
     tacacgacct atggatgagg tggatcgagc agtaccgtaa gatcgacgaa gtaagcgttc      4440
     cacgttgttt cttcagtaaa tttcacccgc aacaagttaa cgatatccag atccatgtct      4500
     ttacggacgc aagtgtgtca gcatgtgcgt gtgtggctta tttgagagtg acagttgatg      4560
     gagagagtca gtgttcatta gtagctgcaa aaacaaaagt atctccactc cgtgcgctct      4620
     ccattccacg cttggaactg caagcagcca tgatgggttc acgcctgcta cagaatatct      4680
     gctcagcgct cacagtcaat atccaaaccc gatatctatg gacagattca gctacagttc      4740
     ttacctggct acgttctgac agtcgtcgtt atcaccaatt cgtctctttt cgcgtcggag      4800
     aaattctgtc gctcaccagt gtgaatgaat ggaaattcta gagaaaatgt agcggacgat      4860
     gccacaaaat ggagcgcagg tccatcattt gatccaaact gtcgttggta tcaaggccca      4920
     gcatttctgc aagatccgga gagccagtgg ccatcggagc gaccagaagt tacagtggaa      4980
     acagacgctg catgcgaaga aatacagttc gtttcagttc accgcacagt tgagcaagtg      5040
     gtagatgtac aacgcttctc taactggaac agactactac gtgctatagc atacgtgcac      5100
     cgagctgtag cagtgtggaa aaatccatca agcgagagaa aaccgatcag aatactgagt      5160
     caaagcgagt ttatgaaggc agagcaatca ctttggcggc aagcacaagc acaggcatat      5220
     gctgaagaaa tttatctgtt aggtgacgga caaaatgtag caaaagcaag ttcgattcgt      5280
     gcgctgtctc catatttgga cgatttagga gttttacggg tcgggggcag aatcgagaaa      5340
     gctcctaaca tatcctaaga ggcgaagcac ccagtaatcc tgcctagaag ccacagaatc      5400
     acgtatctca tcgtactcag ttttcaccaa cggttcctgc acgctaacag tgaaacagtt      5460
     tgcaacgagc tgaggcagca gttctacatt ccaaggatgc gaacagtagt acggagtatt      5520
     tgtcgcagtt gccagtattg taaaattaag aaagcttctc cagctccacc gttgatgggt      5580
     ccgcttccaa aggttcgtct gactcctttc attcgtccgt ttacgtacgt tggcgtggat      5640
     tatatgggtc actttgaagt gaaagtcggt cgaagcattg tcaagcgatg gatatgtctg      5700
     ttcacttgcc ttacaatacg agcagttcat ttagagctgg cacacagttt atctacgaag      5760
     tcctgcgtaa tggcattcag acgattcgtc aaccgacgag gcgcaccact tgaagtcttc      5820
     tcagacaacg gtaccaactt tgtgggtgcc aaacgtcagt tgtccgaaga gatgcagagg      5880
     atgaaagtta tcaacgaaga ctgcgcatcc acctttacca acgctcgcac gcagtggcac      5940
     ttcaacgttc cggctgctcc gcacatggga ggaccatggg agcggatggt gaagtcagtg      6000
     aaagtggcga tggcagccat ttctgaaagt ccgcaccatc ctagtgacga ggtgttcgaa      6060
     acaataatgc tggaagctga aggaattgtt aactgtcgtc cactcaccta cgttcctttg      6120
     gatgcagccg accaagaagc gctaactcca aaccactttt tgttgtacgg ttcgaatgga      6180
     gtcaaacagc caacagtcac agtcgatcag acagtcactc ttcgagacag ttgggtaatc      6240
     ggtaacaatc tggtggacga gttttggcgc cgatgggtgt tggagaattt accgatgcta      6300
     acaagaagaa cgaagtggtt cgagaacgtg aagccattga agccgggcga tctggtcgtg      6360
     atcatcgacg agaaggttcg gaacagttgg gaaagaggac gaatcttgga agtttttccc      6420
     gacaaatcag gtcaggtacg acgtgcgata gtgcagacag ctcgaggaat cttcgctagg      6480
     ccagcagtta tactggcagt tttggacgtt gtcggtgacg gtaggaagtc cgatgatgtc      6540
     gcttcagaac cggaaatggt tcacggggcg gggga                                 6575
//
ID   BEL-851_AA-LTR repbase;    DNA;    INV; 599 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-851_AA-I;
KW   BEL-851_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-599
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-599
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3175-3175 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 599 BP; 199 A; 104 C; 127 G; 169 T; 0 other;
     tgttaccggc aacactgttg accgcgaaac gaaggtgaat ccactgtcct ttccctcgcg        60
     actgagcgga ttccgccaag tggaatgaca gatcacggcg tacgtcagac acagagcaaa       120
     taatacaaca gaatattcta tatacagtta gtcagcagtt tgtacagtga atcaaagagt       180
     gaagtgcaca tttgtcaatc attatttagt aagttgaaag agagtgaaat tagttgaatt       240
     cctttatttc tgtgcattta tattgtagag tttcagtagc agttccaaat acagtagaga       300
     cagttgaacc gcgataaagt taggaagttt cgcactgaag gtttgtccga ttcaaagaat       360
     gttctagtga atttataacc tgaaattaga aatgtaaaca gtctgaatta tatgtagatt       420
     agctgaggac agttcttccc gtttataaac cgagcagaca ggacagaccg agagaaatac       480
     tgaaatgtaa gatgactgaa ttaatcactt ttacaactaa ctgatcttca ataaattaca       540
     gctttgtagc tgctaagtct gcaactaaaa gacggtgttt gttctgacga tcgggaaca        599
//
ID   BEL-852_AA-I repbase;    DNA;    INV; 5919 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-852_;
KW   BEL-852_AA-I; BEL-852_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5919
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5919
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..1714
FT                 /product="BEL-852_AA-I_1p"
FT                 /translation="MSLADDRSTRGHEDETSSHIESLDSASTTASRRARLQ
FT                 LQLQRLEEEQAILKKKAALEIEEEFTRKKYEALEASIADDAASVRSKVSKG
FT                 KTQQQVHDWMTRLETVPVGETNQDAIDVREELVGAVGGVNEKSDPEKDKAK
FT                 IYTPPPAAQRPANEDQSKKGDCISQTPMPQDIEDLRHLLEQYKTLYLAERE
FT                 KNRKQLSPPQLGLSRGAYPKQSVSSENFDNRPSSSTPKLKGADKRLLETQY
FT                 KLSYSAVEDSRQAGKRASRETTNVHFRDSVSLTSTAQPYGSEVPITNVRKA
FT                 HPEDLTNDNVNFQATATAQVQDLTFPEATIGPTSQQLAARQILPRDLPCFT
FT                 GNPADWPVFISQYNYTTQACGYSDGENMIRLQRCLKGAAWEATRSRLILPA
FT                 SVPHVIEALRMRYGRSELLIESLIERVRSTPCPKADKLDTIIEFGTKIQTL
FT                 CDHITAANLVEHLGNPTLLKDLVEKLPAEYKMRWAAYRKNRPLVNLQTFGE
FT                 YMEEVVTDACSVSSYGGSATEKPMKREKAMSNDRSLLHSDFGVAAVQSIKI
FT                 AIGLRLSTTISNASFAEK"
FT   CDS           1627..5916
FT                 /product="BEL-852_AA-I_2p"
FT                 /translation="LRGSSSAIDKNSNRLATFNNHFECLVCRKVGHRAREC
FT                 EAFKAMSTNERWRKVQNLGLCRTCLFNHGRRSCRVTNRCGVNGCQTRHHPL
FT                 LHSNPKDSAAITPTPLDLHFHSGDLPSLLFRIIPVILYSGSNKVSTYAFLD
FT                 EGSNISMIERNLASILGVTGYRRPLCLKWTGNVTRAEDNSHRVTLKISGVN
FT                 RKAPKYVISEVGTVDSLDLPKQSLPIENLAERYSHLQGLPIEGYCDITPQL
FT                 LIGVDNLKLAVPLKIREGSGDGPTAVKTRLGWCVYGGHRDDRQLSLSYHVC
FT                 NCSDGDTLDKTLKSYFSLEEAGIQPADAGVSPEDERALCILERTTKAVEDR
FT                 YESGLLWKYDEFEFPDSFPMAVKRLQCLERRLAKDPALNENVRKQILEYEL
FT                 KGYAHRASPEELNSADPRRVWYLPLGVVTNPRKPGKVRLIWDASAKVDGVS
FT                 LNSMLLKGPDQMTLLPAVLFRFRQFPIAVSADIREMFHQVRIRADDRHAQR
FT                 FVYRNTPTTPLETYLMDVATFGSTCSPATAQFVKNTNASRFAHECPRAVQG
FT                 IIHNHYVDDYLDSFTTKEEAAEVALQVKAIHKHGGFDIRNWCSNDRLVLEQ
FT                 LGEAKHESVIDLNSGTDKQAERVLGLFWDTEEDEFLFSTSIQKDIALLRGN
FT                 NIKPTKRQLARCVMSFFDPQGFLAPYLVFGKVLLQDTWREGTGWDEQVSDE
FT                 TFKRWNQWMDILDNIDRVRIPRCYFSTVNLSTLEIHTFVDASEIAYSCVSY
FT                 FRITNPYGPSEVAFVAAKTKVAPLKPTSIPRLELMACVLGVRLAKFVVDGH
FT                 SLSVKKHFFWSDAEVAMSWINADPRKYRPFVAFRVGEILEKSNREDWRWVP
FT                 SRLNPADEATKWGAGPYFSKTSIWYSGPVEFLRYPEHQWPERKTTSIVSDE
FT                 KRTCYIHHQQHIPQQILNVERFSSWKRMQRVMAYVCRFLNNCRTSVTNRKR
FT                 EIGHLTQPELQKAEEYLFRAVQWESYVEELATLTNNQSLPVHKRQPLEKTS
FT                 TLYKLSPILDASGVLRMDSRIGAAQHVSIEMKYPIILPKRHRVTMLVLEDL
FT                 HRQLLHANNEAVVNEARQRYHIPQLGTLVRQVCNQCQLCKIRRAQPAVPRM
FT                 ASLPAARLASYVRPFTYCGLDYFGPISVKANRSHVKRWVAIFTCLTIRAVH
FT                 VELIYKIDTESCIKGVRRFICRRGSPVEIYSDNATCFHGAERLLREQINKG
FT                 LAAKFTSTQTAWKFIPPGTPHMGGAWERMVRSIKVALRSIQNGSEKLDDES
FT                 LQTFLIEAEAIVNCRPLTYLPLDSVEQEALTPNHFLLGSSSGVRLPLVQTA
FT                 DTASVLKASWKSIQKNLDTFWRRWVREYLPTLTKRTKWFGEAKPVRPGDLV
FT                 LIIDDTRRNGWVRGRVLEVLPAADGRVRQAIVQTPGSAPSRKSVSKLAVLE
FT                 VLKDSGTIEAMAPPGG"
XX
SQ   Sequence 5919 BP; 1727 A; 1405 C; 1433 G; 1354 T; 0 other;
     attctttaag aatttcatca tgagtctagc agatgatcga tcaacccgtg gacatgagga        60
     cgaaacctcc agccacatcg aaagcctaga ttcagcatcc actaccgcta gccgtcgagc       120
     caggctgcaa ttgcaactac agcggctcga agaggaacaa gcgatattga agaaaaaagc       180
     ggccctcgag attgaggaag agttcactag gaaaaagtac gaagccctgg aagcgtctat       240
     agcggacgat gcggcgagtg tccgaagtaa agttagtaaa gggaaaaccc agcagcaagt       300
     gcacgattgg atgactcgtc ttgagacggt tcccgtcgga gaaacaaatc aagatgccat       360
     cgacgttcgc gaggagctag ttggcgcggt cggtggagtt aatgaaaaat cggatcccga       420
     gaaggataaa gcaaaaatct atactcctcc tccagcagca caaaggccag cgaacgaaga       480
     tcaatcgaaa aaaggagact gcataagcca aacgccaatg ccacaggata ttgaggacct       540
     acgacacttg ctcgagcaat ataagacgtt gtatttggcg gaaagggaga agaaccgaaa       600
     acaattgtct ccaccacagt tgggtctaag cagaggagcg tacccgaaac aatcagtatc       660
     atccgaaaac ttcgataacc gtccatcatc ctcaaccccg aaactgaagg gggcagacaa       720
     aaggctgctc gaaacacaat ataagttgtc ctattcggca gtcgaagatt caagacaagc       780
     aggtaaaaga gcctcaagag aaacgacgaa tgtccacttt cgtgacagtg tctcactgac       840
     cagtacagct caaccatatg gtagcgaggt tccaataacc aacgtacgta aagcacatcc       900
     ggaagacctt accaacgata atgtcaattt tcaagctaca gcaacagccc aggttcaaga       960
     ccttacattc ccagaagcaa caattggtcc cacctctcaa caattagcag cgcggcaaat      1020
     attgcctagg gatttgcctt gtttcaccgg aaatccagcg gattggcccg tgtttatatc      1080
     ccaatataac tacaccactc aagcttgcgg atacagcgat ggcgaaaaca tgattcgtct      1140
     gcagcgctgt ctgaaagggg cagcatggga agctacccgc agtcgcttga tactaccggc      1200
     gtccgttcca catgttatag aagcactacg aatgcgttac ggacgatctg agttgttgat      1260
     tgaatcattg atagagagag tcaggagtac gccgtgtccc aaagcggata agctggacac      1320
     tataatcgaa ttcggtacca aaatacaaac cctgtgcgat catatcacag ctgcaaatct      1380
     tgtagaacat ctcggtaatc caaccttact gaaggatctg gtggagaaac tgccagccga      1440
     gtataaaatg cgatgggctg cgtatcgaaa gaacaggcct ttggtgaatc tccaaacctt      1500
     tggcgagtac atggaagaag ttgtcaccga tgcgtgcagc gtgtcgtcct atggaggcag      1560
     tgcaaccgaa aagcccatga agcgcgagaa agcaatgtcg aacgatagat cgctgttgca      1620
     ttctgacttc ggggtagcag cagtgcaatc gataaaaata gcaatcggct tgcgactttc      1680
     aacaaccatt tcgaatgcct cgtttgcaga aaagtaggac atcgagcgag agaatgcgag      1740
     gcgttcaagg caatgtcaac gaacgaacgc tggaggaaag ttcaaaacct cggattgtgt      1800
     cgaacatgcc tgttcaacca cggcagacga tcctgtcggg ttaccaaccg atgcggcgta      1860
     aacggttgcc aaactcgtca ccatcccctt cttcactcca atccaaaaga ttctgcagca      1920
     atcactccga cgccattaga cctccatttc cacagcgggg acctcccttc gctgttgttc      1980
     cgtataattc cagttattct gtatagtgga tcgaacaagg tgtcaaccta cgccttcttg      2040
     gacgaagggt ctaacatttc aatgatcgag aggaatttgg catcgatcct tggtgtaact      2100
     ggatatcgtc gacccttgtg tctcaagtgg acgggcaatg ttactagagc agaggacaat      2160
     tcgcatagag taactctcaa aatatcaggc gttaatcgaa aagcaccaaa atacgtcatc      2220
     tctgaagttg gaaccgtcga ttcactcgat ctgcctaagc aaagtttacc gattgagaac      2280
     cttgcggaaa ggtatagcca tcttcaaggt ctacccattg aaggttattg cgacattact      2340
     cctcagttat tgattggagt tgacaatctg aagttggctg tgccactaaa aataagagaa      2400
     gggagcggag atggtccaac agccgtaaaa acgagacttg ggtggtgcgt atacggaggc      2460
     caccgtgatg acagacaact ctctctcagc taccacgtct gcaactgttc ggatggcgat      2520
     accctcgaca aaactctaaa atcatatttc tcgttagaag aagctggaat tcagccggca      2580
     gacgctggag tttcacctga agatgagcgt gctctgtgta tccttgaacg cacaacgaaa      2640
     gcagttgagg atcgctatga atcagggctt ttatggaaat acgacgagtt cgaattcccc      2700
     gatagtttcc ctatggctgt caaaaggcta caatgcctag agcgcagatt ggctaaggac      2760
     cctgctctta atgaaaacgt tcgtaaacag atccttgagt acgagctaaa aggctacgca      2820
     catcgtgctt cgcccgagga gcttaacagt gctgatcctc gtcgtgtgtg gtatttgcca      2880
     cttggggtcg taaccaaccc aaggaagccc ggtaaagtgc gccttatttg ggacgcctca      2940
     gcaaaagttg atggagtctc tctgaactcc atgctgttaa aagggcctga ccagatgaca      3000
     ttgttgcctg cagtactttt tcgttttcga cagtttccga tagcggtaag cgcagatatt      3060
     agagaaatgt ttcatcaggt acgtatccga gcagacgacc gtcatgcaca acgattcgtc      3120
     tatcgtaata cccccacaac acccctggaa acgtacctga tggacgttgc cacatttgga      3180
     tcaacctgtt cccccgccac agctcaattc gtaaagaata cgaatgccag ccggtttgct      3240
     catgaatgcc ccagggcagt acaaggaatc atccacaacc actatgtgga tgattatctt      3300
     gacagcttta ccaccaaaga agaggcggct gaagttgcgt tacaggtgaa ggcaattcac      3360
     aaacacggtg ggtttgatat aaggaactgg tgcagcaatg atcgactggt cctcgaacaa      3420
     cttggggagg ccaagcatga atctgtcatc gatctgaact ccggtaccga taagcaggcg      3480
     gaaagagtac ttggcctatt ttgggacact gaggaagacg aatttctgtt cagcacatca      3540
     atccagaagg atattgctct tctacgagga aacaacatca aaccaacaaa gcgccaatta      3600
     gcaagatgcg tcatgtcgtt cttcgatcca caagggtttt tggcaccata tttggtgttc      3660
     ggaaaagttc tgctgcagga tacgtggcgc gaaggtactg gttgggacga gcaagtcagc      3720
     gacgaaacat ttaagcgttg gaatcaatgg atggatattc tggacaacat cgatcgagta      3780
     agaattccaa ggtgttactt ctcgacggtt aatctttcaa cgctagaaat ccacacgttt      3840
     gtggacgcaa gcgaaatagc atactcgtgc gtttcgtatt ttcgcataac gaatccctat      3900
     ggtccatcag aggtggcgtt tgtagcagcg aaaaccaagg tagcccctct taaaccaaca      3960
     agcattcccc gtctagagct catggcgtgc gttttgggag tacggctggc caagttcgta      4020
     gtagacggac attcactatc cgtcaagaag cacttctttt ggagcgatgc agaggtcgcg      4080
     atgagttgga tcaatgcaga tcctcgaaaa tatcgcccgt tcgtcgcatt tcgagtgggt      4140
     gaaatcttgg aaaaatctaa tcgcgaggat tggcggtggg tcccgtccag actgaacccg      4200
     gcagatgaag caacaaagtg gggcgccggg ccatatttta gcaagacgag tatatggtac      4260
     agcggtcccg tggaatttct tcgttatcct gaacaccagt ggccggaacg aaagacgact      4320
     agtatagtct cggatgaaaa acgcacctgc tacattcatc atcagcagca cattccgcag      4380
     caaattttga acgttgaaag attttcatcg tggaaaagaa tgcagcgcgt gatggcctat      4440
     gtttgtcgat ttctgaacaa ttgtcgaaca tccgtcacca atcgaaagcg ggaaattgga      4500
     catctaactc aacccgagct ccaaaaagca gaagaatatt tgtttcgagc tgtccagtgg      4560
     gagtcgtacg ttgaagaatt agccacatta accaacaacc aaagtcttcc agttcataag      4620
     cgtcaaccac tggaaaagac aagcactctg tacaagcttt cgccaatatt ggatgcatct      4680
     ggagttctcc gcatggacag taggatcggt gcagctcaac acgtgtccat cgagatgaag      4740
     tatcctatca tcctaccaaa gcgacaccgt gtgactatgt tggtacttga agatcttcat      4800
     cgtcagttac tgcacgccaa caatgaagct gtcgtgaacg aagcacgcca acgctaccat      4860
     ataccacagc taggcacgct agttcggcaa gtatgtaatc agtgtcaact gtgtaaaata      4920
     cgacgagctc aaccagcagt tccacgaatg gcttcgcttc cggctgcaag gctagcttct      4980
     tacgtacgcc cctttactta ttgtggtctg gattacttcg gacccatttc ggtgaaagca      5040
     aaccgcagtc acgtaaaacg atgggtagct atcttcactt gtctcacgat ccgggcggtt      5100
     catgtagaac tcatctataa aattgatacc gaatcgtgca tcaagggagt acgccgtttc      5160
     atatgtcgtc gaggaagtcc ggtagaaata tacagcgata acgctacctg ttttcatgga      5220
     gctgaacgac tgctcagaga acaaatcaac aaaggacttg cagccaaatt taccagtact      5280
     cagactgcgt ggaagttcat tcccccaggc actccacata tgggaggtgc ctgggagcga      5340
     atggtaagat cgattaaagt tgctttgaga tcaatacaga acggtagtga gaaactggac      5400
     gacgagtcac tccaaacatt cctgatagaa gcagaagcta tagttaattg ccggccactc      5460
     acctatttgc cacttgactc agtcgaacaa gaagcattaa caccaaacca ctttttgctt      5520
     ggtagttcct ctggagttcg cttaccacta gtgcagacag ctgacactgc gtcagtacta      5580
     aaagcttcgt ggaaatccat tcagaaaaat ctggatacat tttggcggcg ttgggtaagg      5640
     gaatacctcc caactttaac aaaacgtaca aagtggtttg gagaagctaa accagttcga      5700
     cctggagacc ttgtcctcat aatagacgat actcgacgca atggatgggt acgcggacga      5760
     gtactcgaag tactgccagc tgctgacggg agagtgcgcc aagccatcgt acagactcct      5820
     ggaagtgcac cctctaggaa atccgtttca aaactggcgg tcttggaggt attaaaggat      5880
     tctggaacca tcgaagctat ggctccaccg gggggagga                             5919
//
ID   BEL-852_AA-LTR repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-852_AA-I;
KW   BEL-852_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-458
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-458
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2986-2986 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 458 BP; 140 A; 91 C; 91 G; 136 T; 0 other;
     tgttgcgaaa ctggcaaccc cgccagggcg aaattcgaca cccgagcgaa ctgatgacga        60
     actgctgctt cggtacgatc aaagggagta aaacaatagt tctcgaatgg tgatgtggcg       120
     catcgtttag tgcaaattta caattattct atgctagaaa ggaattagaa acattgaatt       180
     cgataccgat attaagtcgt agttatagtt aaggattaga tacagatatc taacctatgt       240
     tctggttaaa acagcttgtc attcgcacaa gatttgacct cacaattacc gttggcgatt       300
     cgtattgttt ggggacattt gattggtact attcccgcac tgaaattgta agtcaattta       360
     ctgttcaatt atccatgcac taattctctt gaaataaact attttagctt aaagcctacg       420
     ctacaaagaa tcagcggcgt ttcactagtt ccccaaca                               458
//
ID   BEL-853_AA-I repbase;    DNA;    INV; 5658 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-853_;
KW   BEL-853_AA-I; BEL-853_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5658
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5658
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(292..975,979..5289)
FT                 /product="BEL-853_AA-I_1p"
FT                 /translation="MHRTPIKTRSAAKNQSEYTGSDSDSQNQNIQSEEVEN
FT                 SNPFSVSDQKKQRTLKEERKKMEEKIQMLMKKRETVRRKVQRIYTAISEPE
FT                 NANNRSKHYLQVQIEMLTRCYTEYNEFQNEIYDLITSDERQATEEMVYIEF
FT                 ERVYGHLLARLTQMMEDATVKFPLASSVPLQEQSVNQVALPPLKVPLPTFD
FT                 GSYENWYAFRSMFENIMNRYNAESPAIKLYHLRNALVGASGIIDQDIINNN
FT                 DYVAAWNTLRDRFEDKRLIVNKHIEAILNLPKMTKESAIDLRKLIDICNKN
FT                 VDALTNLELPVVGLGEMVILNVISSKMDFETRKAWELVQKPGQLPEYAKTM
FT                 DFLKDRCKALEKIQVSTKAVGQIVKQNRPAVKSDARAHSLVTTEGQCFHCN
FT                 GSHPIWKCDTFKKADYNAQKTSLIKFGGCFNCLQKGHTAGDCKSTHTCKKC
FT                 RQRHHTLIHREEQQPSTSELETTSHQKVAVNSNSASPTENTATSLCTIGKK
FT                 QNLIATAVVFVHGKGHSKVACRAVLDSASHSHFVTEQFATLLGLKRKSACY
FT                 VISGINGQQVRIKFKLQTQVESRICEYTTKPLELLVVPKITGDLPLTKFDA
FT                 KAVHIPEGVVLADSAFNIPDTVDLLIGSEVFYKLLESGQHDLGDNAPFLQE
FT                 TKFGWIVSGLVPTTHNTVGSSLTSVVEQDDLSEILARFYEIETYTEPPHIE
FT                 DEEETCLNHFNATHQRGLDGRYIVRIPFNDLKAELGDTRQMAEKRFASLER
FT                 RLDREPLLKEQYKAFIREYEDLQHLREIIPSSYEESSGAFYLPHHCVLKPS
FT                 STTTKLRVVFDGSAESATGISLNQAQYAGPTVQNDLISILLNFRSYRYAVS
FT                 ADIPKMYRQVVVHPEDQPYQRILWRDDNSQSLKVLQLTTVTYGLKSSPFLA
FT                 TMSLLQLVKDEGDAFPLAAQAITKSCYIDDMLSGADSIPELLELKQQLIDC
FT                 LAKGGFNIHKICSNSNELLEDTPIHQRETSQEINDRKLPTKTLGITWEPQS
FT                 DVFRISIPLQLGQELTKRSILSQIAKIFDPLGFLGPVLTTAKLLMRELWML
FT                 NINWDDPIPSAIASRWKTFREELYSLQDMDLPRRFIVDGAIKVELHGFSDA
FT                 SDNACGACVYARSIFLDGSSQLRLMCSKSKILPEKKKGKPKYISTPRAELE
FT                 AALLLANLVDKVTSALDYDFDSTTLWSDSQIVLAWIAKRPEQLMVYVANRV
FT                 RKINNITNVKNWQYIPSASNPADLISRGAAPMHIINSILWWNGPPSLGNIE
FT                 PPLPLNEDELPEMKQASLVATAKTPPRLAIFDRLSRYPIIERAMGYVIRFT
FT                 DYIRSHRKEMTKGSLTVDELRRAKLLVIRLVQSEAFQPELQLLKQDQIARH
FT                 PLRCLNPFIDPNDGILRVGGRNKHAIIPYDSKHQMLLPERHPFTVSLIRHL
FT                 HNSNHHLGQRGLLAVVRQRFWPIRVKNIIKKIIHHCVPCFKMRPVKATQLM
FT                 GNLPDYRVQPAPIFATTGVDFAGPFIFKSLTQARKPMYTKGYVCVFVCMST
FT                 RALHLEPVSNLTSEAFLAAQQRFVSRRGLPSKMISDNATNFEGACNELERL
FT                 AALFKEEQFQKKLDQFCTQRSIEWSFIPPRSPHLGGIWEAGVKSVKSHLKL
FT                 ILAEHKLTFEEFATVLSQIEAVLNSRPLVPSSDDHRPRVPSDTCTIV"
XX
SQ   Sequence 5658 BP; 1699 A; 1273 C; 1332 G; 1354 T; 0 other;
     tttggtccat tcgaccggat ttttggaagg acattcgatg gttcccgacc ggtgttaacg        60
     ggatttgaaa gtaaacgcga aaagtttaaa attcggcgcg agtgccgtgc acaagcgata       120
     cgaaacacgt acccgcgtgt taaccgtgga cgccatcttg gcgaatcgat tgttcgcgaa       180
     acaaaacgga gctgcagcgg gattggaaat ccatatcgga cataaaagac agtggaacac       240
     tcaaagaaca gtgaaaagta ttggtgttcg cgctgaaata gtaaaagtgg catgcatcgc       300
     acaccaataa aaacgaggag tgctgccaaa aaccagagtg aatacacggg ttcggacagt       360
     gactcccaaa atcagaacat acaaagtgaa gaagtggaaa attcgaatcc gttctcagtg       420
     agtgatcaaa agaagcaacg cacgcttaaa gaagaaagaa agaaaatgga agaaaaaata       480
     cagatgctga tgaagaaacg tgaaacagta cgacgaaagg tgcagaggat ttatacggct       540
     atatcggaac cggaaaatgc aaacaaccgg agtaagcact atctgcaagt acaaatcgag       600
     atgctgacac gatgctacac ggaatacaac gaattccaga atgaaatcta cgatttgatt       660
     accagcgacg aacgccaagc tacagaagag atggtgtaca tcgaattcga acgggtttac       720
     ggacacttgt tggctcgttt gactcaaatg atggaagatg cgacggtcaa atttccactg       780
     gcctcctctg tcccacttca ggaacagtct gtgaaccagg ttgctctacc accattgaaa       840
     gtaccactgc caacttttga tggctcctac gaaaattggt acgcctttcg cagcatgttt       900
     gaaaacatta tgaacaggta caacgcggaa tcgccagcca tcaagttgta ccacctacgg       960
     aacgctttgg taggttaagc ttctggaata atagaccagg acataatcaa caacaatgat      1020
     tatgtcgcag cctggaacac acttcgcgat aggtttgagg acaaacggct aattgtcaac      1080
     aagcacattg aagctatcct aaacctaccc aagatgacaa aggaaagcgc aatcgacctg      1140
     cgtaaattga tcgacatttg caataaaaac gtcgatgctc tcaccaatct cgaattacct      1200
     gttgtcggat tgggtgaaat ggtgattttg aatgttatat cctcaaagat ggattttgaa      1260
     acacgtaagg cttgggaact ggtacagaaa ccgggtcagc ttcctgagta cgcgaagaca      1320
     atggatttcc tgaaggacag gtgcaaggca ctggagaaga ttcaagtcag cacgaaagca      1380
     gttggtcaga tcgtaaagca aaatcgaccg gctgtgaaat cagacgccag agcacattcg      1440
     cttgtcacca cagaaggaca atgtttccat tgcaacggat cgcacccgat ttggaagtgc      1500
     gacactttca agaaggctga ttacaatgca caaaaaacca gcctaatcaa attcggagga      1560
     tgcttcaact gccttcagaa ggggcacaca gcaggcgact gcaaatcaac gcacacgtgc      1620
     aagaaatgca gacagcgcca tcacacgctg attcatcgtg aagagcaaca gccatctacg      1680
     tctgaactag aaacgactag tcatcaaaag gttgctgtca actccaactc tgcgtcaccg      1740
     actgaaaaca cagcaacttc tctttgcacc atcggaaaga agcaaaatct aattgcaact      1800
     gccgtggtgt tcgtccatgg taaaggtcac tcgaaagttg cttgtagagc ggtgctcgat      1860
     tcagcatccc actcccactt tgttactgag caatttgcaa ctttgcttgg cttgaaacgg      1920
     aaatctgctt gttatgttat ctctggaatc aacgggcaac aagtacgtat caagttcaag      1980
     ttgcagacgc aagtggaatc aaggatctgt gaatacacta ccaaaccatt agagctgcta      2040
     gtagttccga aaattactgg agacctgccc ctaacgaaat ttgatgcgaa ggctgtccat      2100
     attccggaag gcgttgtgct tgccgattca gcttttaaca taccggacac cgtggaccta      2160
     ttgattggtt ctgaagtttt ctacaagctg cttgagtccg gacaacacga tttgggagat      2220
     aatgctccgt ttctccaaga aaccaagttc ggctggattg tgagcggtct agttcccacc      2280
     acacacaaca cagtaggaag tagtttgaca agtgtggttg agcaagatga tttgagtgag      2340
     attcttgcta gattttacga aatcgagacg tacacggaac cacctcatat tgaagacgaa      2400
     gaagaaacat gtctgaatca cttcaacgcg actcaccaaa ggggcttgga tggacgctac      2460
     atcgtgagga ttccattcaa cgatctcaag gcggaactag gtgataccag acagatggcg      2520
     gaaaaacgat tcgcatcact cgaacggcgg ctggatcgag agccgttgtt gaaagaacag      2580
     tataaggcat tcattcgtga atatgaagat ttgcagcatt taagagagat aattccatcc      2640
     agctatgaag aatccagcgg tgccttttac ttgccgcatc actgtgtgct gaaaccgtct      2700
     agtactacga cgaagctgcg tgtagtattt gacggatcgg cggagagtgc tacagggatt      2760
     tctctcaatc aagcgcagta cgcaggaccc actgtgcaga acgatctgat ttccatcttg      2820
     ctcaacttca gatcgtatcg atatgctgtc agtgcagaca tacccaaaat gtaccgtcaa      2880
     gtggtagtac atcctgaaga tcagccgtat cagcgaatac tttggaggga tgacaacagc      2940
     cagtcgttga aggtgctgca attaacaaca gtaacgtatg gcctgaagtc ttcgccattt      3000
     ttggcgacga tgtcgctgct tcaactagtg aaagatgaag gagacgcatt tcctttggct      3060
     gctcaagcta tcacgaaatc gtgttacatt gacgacatgc tttcaggcgc cgacagcatt      3120
     cctgaattgt tggaattaaa acaacagctg attgattgtc tggccaaggg cggattcaat      3180
     atccacaaaa tctgctcaaa ctccaacgaa ttgctcgaag atactccaat ccaccagcga      3240
     gagactagtc aagagattaa cgaccgaaag ctgcccacca aaactctggg aataacatgg      3300
     gagccacaga gtgacgtttt tcgaattagc attccattgc aacttggtca ggaacttacc      3360
     aaaaggagca ttctcagtca aatagccaaa atattcgacc ctctaggatt cctaggacca      3420
     gttttgacta cagcaaaatt actaatgcgt gaattgtgga tgcttaacat caactgggac      3480
     gacccaatcc cgtcggctat agcatcacgc tggaaaacat ttcgcgaaga actgtattca      3540
     ctccaagaca tggatcttcc tcgacgtttc attgtggatg gcgccataaa ggtcgagctg      3600
     catggatttt ccgatgcttc ggataatgcc tgtggagctt gtgtgtatgc gagatcaata      3660
     tttttggacg gatcgtcaca actgcgatta atgtgcagca aatcaaaaat tttgccggag      3720
     aaaaagaagg gaaaaccgaa atacatttcc acgccacgcg cggagttaga ggctgctttg      3780
     ttactcgcca accttgtcga caaagtgacc tctgcactgg attacgattt cgattcaaca      3840
     acattatgga gtgattcgca gattgtactt gcttggatag ccaaaagacc ggagcagctt      3900
     atggtgtacg tggctaaccg agtgagaaag ataaataata tcacgaacgt aaaaaattgg      3960
     caatacatcc cttcggcgtc aaatccagct gacctaatct ccagaggggc tgcgccgatg      4020
     catatcatca atagtatcct gtggtggaac ggaccaccaa gtttgggtaa catcgaacct      4080
     ccattgcctc tgaatgaaga tgaactcccg gagatgaaac aagcatcttt agtggcaact      4140
     gcgaagactc ctcccaggct ggcaattttc gatcgtctca gcaggtaccc gattattgaa      4200
     cgagcaatgg gatacgtgat aaggttcact gactacattc gaagtcatcg aaaggaaatg      4260
     acaaaaggat cgcttactgt ggatgagctc aggcgagcta agcttctggt tattcgatta      4320
     gttcagagtg aagcgttcca gcctgaactt caacttctta agcaggacca aatcgctcgt      4380
     catccattac gctgtcttaa tcctttcatc gatcccaacg acggaatact tcgagtaggc      4440
     ggccgaaata agcatgccat tattccctat gatagcaagc accaaatgtt gctacccgaa      4500
     aggcatccgt ttacagttag cctcattcga catctccaca atagtaatca tcatctggga      4560
     caacgaggat tgttagcagt agtacggcaa cgcttctggc ctattagagt gaagaacatc      4620
     atcaagaaga taatccatca ctgcgttccg tgtttcaaaa tgcgaccggt gaaggcgact      4680
     cagctgatgg gcaacctccc ggactacagg gttcagccag caccgatttt cgctactaca      4740
     ggtgttgatt ttgccggtcc cttcatcttc aaatcgttga cccaagcaag gaagccaatg      4800
     tacaccaaag gctatgtctg cgtttttgtg tgtatgagta cacgtgcttt acatctggaa      4860
     cctgtttcaa acttgacgag cgaagctttc ttggcagccc agcaacgatt cgttagccgc      4920
     cgtggtctac ctagcaagat gatatccgat aacgcgacta acttcgaggg tgcatgcaat      4980
     gaattggagc gtcttgcggc acttttcaag gaggaacaat tccagaaaaa actcgatcag      5040
     ttttgcactc aacgaagcat tgagtggtcg tttattccac ctcgtagccc ccacttaggt      5100
     gggatttggg aggccggtgt gaaatcggtc aaatcacatc tcaaattgat tttggcagag      5160
     cacaagttga cctttgagga attcgccacg gttttatccc aaattgaagc cgttttaaat      5220
     tctcgaccgt tggtgccatc gtcagacgat catcggccgc gagttccaag cgatacctgc      5280
     accatcgtat gaacatattc cggttggaag gctgtcgcga ttacaattct tgcaggacct      5340
     gaaacaaaaa ttttggaaaa tttggatgac agattattag caagaacttc aacgtcggca      5400
     aaaagattac aagatcacac agttaaactg gcgcacttgt gttgattgtt gacgacaatc      5460
     ttgcacctct tcaatggtgt ttgggacgga ttatcgatat gcatccgggt actgatggcc      5520
     acacgcgtgt agtaaccttg aggacgaagg acggaacgac gaagcgagcg gtcaagaaga      5580
     tttgtttgct tcctttggat ggcgaagatg tcaaagagtg atgtttagaa atgaagccat      5640
     ttcaaggccc cgggatga                                                    5658
//
ID   BEL-853_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-853_AA-I;
KW   BEL-853_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2987-2987 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 67 A; 49 C; 27 G; 71 T; 0 other;
     tgttttgccc aaatcaaaaa tatgtctctt ttatacatac agtccaccca tgtattcatt        60
     ttatattcac tcacacagaa caattcgaac catttttata aaaacactat ttcttttaga       120
     ataaagtgaa ctttcacccc gaacggacgc aagctagttt tcattctcgg tcttcaatca       180
     ccgaaactgt ccatgtgagc tttttggagg aaca                                   214
//
ID   BEL-854_AA-I repbase;    DNA;    INV; 6052 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-854_;
KW   BEL-854_AA-I; BEL-854_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6052
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6052
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..1780
FT                 /product="BEL-854_AA-I_1p"
FT                 /translation="MSKHSKAGSRDDARATAMITQSVAGLPADNAVGSATQ
FT                 VNLDMGISAYHKTGTIPKNIVNKPGSAVSLPRRNPPRDARPNRQSSCQLCD
FT                 GLDNMNMIQCDACRGWFHCECVELTDEIENESWRCTKCVAFPCQSLARSAA
FT                 DQTSEVKKQQLQNPSQRSRSSGKSMQSEARRRLKLQLLKIEEEKRLEKEYL
FT                 EKKFEALLEFGSESSAVVSDSESIFDNASKIEQWMADTDRFGVDVDSGLAD
FT                 EVDGPVVINSRRPAEHSAQNLGYNVDQPNYQQGQPPGRGLQFVNSPSVRIH
FT                 LAQRAQPLESHMRTETTVHPNQFIPEQRSTPMRYDHQQGVQPAQLVGDDTL
FT                 CILNRSQLAARQAVSKELPEFSGNPEDWPLFFSVFNSSTQMCGFSNEENML
FT                 RLRKCLKGRALEAVRCRLLHPTNVAGVMSTLRMLYGRPEAIVQAIVKKVRA
FT                 LPSPNIDRLETVVNFALTVENLVATIQACGVNDFVYNASLRYELVERLPSS
FT                 LKLDWAKYSRNTPNPNLLDFSTWMYSMAEDASAVMASASGDSKPRFNKKDG
FT                 FLNVHVESESGKSKLQLGSQTAKQTTPCISEKTVPYM"
FT   CDS           1722..6026
FT                 /product="BEL-854_AA-I_2p"
FT                 /translation="GHRQRSKRLPAYRKKQCPICKGGCQTVVKCKRFAEFS
FT                 IDSRWAAVRECKLCRKCLRKHNGSCRQQRPCGTNGCTYLHHSLLHTTARQQ
FT                 TDRPAAAITETTAPAETAQPSCNIHQCQSKLLFRILPVVLYGPSKAVRTYA
FT                 FIDDGSELSIMEQGLADELGVKGPRTSLCLKWTGGSQRLEKSSQRVSIQIS
FT                 SSKHGSNKYQLSSVQTVESLQIRPQTLMYADIQEVYQHLAGLPIESYKNAC
FT                 PRILIGLDNLNLGHPLKSQEGRPYEPIAVKTRLGWTVYGSCAFKDTTTHSV
FT                 NYHALQICQCNQYTDEDLHQTVKSYFSLDNPSGIVKPDRMPQSQDDQRAQL
FT                 LLKSLTKQRNGRYESGLLWKYDNVRLPDSKAMALKRWECLERRMKHDPQLA
FT                 DAVRNKVHDHLAKGYIRKLINEEVQAEYPRIWYLPMFPVVNPNKPSKTRLV
FT                 WDAAATAHGISLNSVLLKGPDQLTSLLSVMIQFREYKIAICGDIREMYHQV
FT                 QMRKDDQQCQRFFWKENSTDAEPSTYIVQVMTFGACCSPSTAQYVKNLHAS
FT                 KFEQENPVAAAVIVKRHYVDDMLLSVEQEDQAVQLTRDVKQIHASAGFEIR
FT                 NWASNSSAVLKQLNEPSTAEKSFSEDSVVEKILGIWWNTSSDHFTFKISDR
FT                 IDKQLLSGDRRPTKRQVLRTLMMVFDPLGLIGHFMMLLKTLLQEIWRSSVG
FT                 WDDMINDEHFEKWSTWCAVLPTITELLIPRCYRSLTSTSEANIIQLHIFVD
FT                 ASEAGFAAVAYLRFNEGSIIECALLGSKTRVSPLKFLSIPRSELQAAVLGV
FT                 RLAETICNSLSFKVRQRFFWTDSKDVLCWLNSDHRRYSQFVAFRVSEVLES
FT                 SDVQEWNWIPTKQNVADEGTKWHRNPDMSASSRWFRGPDFLWKTIECWPES
FT                 KHRIGSTNEELRPHLLLHTTVVACPVDIARFSDWRKLLRCTAYVFRYIRNL
FT                 GFCTKKLNRIYGPLNQQELRDAESYLYREAQKAAYSDEIAVLSRDRNSKNP
FT                 DKRLPKSSPLFRQCVFLDEANIIRIRGRTQACLFIARDAVEPIVLPRDHPI
FT                 TKLILLDFHRRFNHQNHQTIINEIRQRFRIPKLKVAYRKIRRECQECKNNY
FT                 ATPQPPLMSDLPPQRLAAFSRPFTFMGVDYFGPMIVTVGRRSEKRWGVLAT
FT                 CLTIRAIHIELAHTLTTDSCILALRNIMARRGTPAVIFSDRGTNFQGASKE
FT                 LKEALQNIDQEQLIKEFTTPNTEWSFIPPASPHMGGALERLIRSVKTNLSK
FT                 LQWRRSPTDEVLNSTLIEIENVINSRPLTDIPIDDVDESPVLTPNHFLLGT
FT                 SNGMKPWVPFSDSATVLRNCFKQSQIMATEFWQRWLRDYLPVITRRSKWFT
FT                 TVNPIRVDDVVVIVDPKAPRNNWPLGRIIATRSGPDGQVRSATVQTSNGIY
FT                 ERPSVKLAVLDVGVRNQDASG"
XX
SQ   Sequence 6052 BP; 1744 A; 1444 C; 1458 G; 1406 T; 0 other;
     ttttacaaat tcttttacca attgagagat gtcgaagcat tccaaggccg gatccaggga        60
     cgatgcgaga gcaacggcaa tgatcactca gtctgtagcc gggcttccgg cagacaatgc       120
     ggtaggctcc gctactcagg taaacttaga tatggggatc tctgcttatc acaagacggg       180
     taccatccca aagaatatag tgaataaacc tggtagtgcc gtcagtcttc ctagacgtaa       240
     tccgccgcga gacgcacgtc caaatcgtca gtctagttgt cagttgtgtg atgggctaga       300
     taatatgaac atgattcagt gtgatgcgtg tagaggatgg tttcattgtg aatgtgtgga       360
     gttaacggat gaaatcgaga atgagtcttg gcgctgtacc aaatgcgttg ccttcccctg       420
     tcaatcgttg gctcgctccg ctgcggatca aacctcagag gttaaaaagc aacaacttca       480
     aaatccatcg cagcgatcaa ggagtagcgg gaagagtatg caaagtgagg ctaggaggag       540
     gctgaagtta cagcttctga aaatcgaaga ggagaaaagg ctagaaaagg aatacctgga       600
     gaagaaattc gaggcgcttc tagagttcgg cagtgaatcg tcagcggtag taagcgacag       660
     tgaatcgatt ttcgataacg cttcgaagat cgaacagtgg atggccgata cagatcgttt       720
     tggtgtcgac gtagattccg gtctagcgga cgaggtggat gggccagtgg tgattaactc       780
     gcgtaggcct gcagagcatt ctgctcaaaa tctcggatat aacgtcgatc aaccaaatta       840
     tcaacaaggt caaccgccag gacgaggtct gcagttcgtc aattcccctt cggtgaggat       900
     tcatctagcg caacgggcgc agccactaga atcgcatatg aggacggaga caaccgtaca       960
     tccgaatcaa ttcatcccag aacaacgatc aacgccaatg agatacgacc atcaacaagg      1020
     ggttcagcca gcgcaattag ttggtgatga cacgctttgc attcttaatc gaagccagtt      1080
     agctgcaaga caagcagtat caaaagagct tccggaattt agtggaaatc cggaagactg      1140
     gcccttgttc ttctcagtct tcaatagttc cactcaaatg tgcggatttt ccaacgagga      1200
     aaacatgttg cgccttcgaa aatgtttgaa aggaagggca ctagaagcag tcagatgtcg      1260
     tctgcttcat ccaaccaatg tcgcaggcgt gatgtccacg ctgagaatgt tgtacggtag      1320
     gcctgaagct attgtacagg cgatcgtaaa gaaggttcga gccctaccat cgccgaacat      1380
     cgaccggtta gagacggtgg tcaacttcgc gctcactgta gagaacttgg ttgcaacaat      1440
     tcaggcatgc ggagtaaacg acttcgtcta caacgcatcg ctgcgttacg aattggtcga      1500
     aaggcttcct tcgtcgttga agctcgattg ggccaaatac tccaggaaca cacctaatcc      1560
     caacctactg gacttcagca cttggatgta ttcaatggca gaagacgcca gtgcagtcat      1620
     ggcatcggct agtggagatt cgaagccacg attcaataag aaggatggtt ttctaaatgt      1680
     acacgtggaa agcgaatccg gtaagagcaa gcttcaacta gggtcacaga cagcgaagca      1740
     aacgactccc tgcatatcgg aaaaaacagt gccctatatg taagggcgga tgtcagaccg      1800
     tcgtaaaatg caagcgtttt gcagaattca gcatcgattc aaggtgggcc gccgttcgtg      1860
     aatgtaaact gtgccggaag tgcttgcgta agcataatgg ctcatgcaga caacagaggc      1920
     cgtgcggcac taacggttgt acatatctac atcattctct tcttcacacc actgcaaggc      1980
     agcaaactga tagaccggca gcggcgataa ctgaaactac ggcgcctgcc gaaacagccc      2040
     aaccgagttg taacattcat caatgccagt caaaactcct ttttcgaatt ctcccagttg      2100
     ttctctacgg accatcgaaa gccgtgcgaa cctacgcgtt tatcgacgat ggttctgaac      2160
     tttctatcat ggagcaaggc ctggcagacg agctaggtgt gaaaggaccg agaacatcat      2220
     tgtgtctgaa atggaccggt ggttcacagc gtttggagaa atcctcacag agagtgagta      2280
     tacagatctc cagcagcaaa catggatcaa ataagtatca actgtcatcc gtacaaaccg      2340
     tagagagcct acagatacgt ccgcagacat tgatgtatgc agatatccag gaagtgtatc      2400
     agcatctcgc tgggctgcca atagaatcat acaagaacgc ttgcccaagg attctaatag      2460
     gcctggacaa tttgaacctc ggccatccgc tgaaaagcca ggagggtcgg ccatacgagc      2520
     cgatagccgt taagacacgc cttggctgga ctgtctacgg cagctgtgca ttcaaggata      2580
     ctactacaca ttccgtaaac tatcacgctc ttcagatttg tcaatgcaat cagtacaccg      2640
     atgaagatct ccaccaaaca gtaaaaagct acttttccct cgacaatccc tccgggattg      2700
     ttaaaccgga caggatgccg cagtcgcaag acgatcagcg agcacagttg ctcttgaaat      2760
     cgctcacgaa acaacgaaac ggacgatacg aatccggact tctatggaag tacgacaatg      2820
     tccgtctccc agacagtaaa gcaatggcgc tgaaaagatg ggaatgtctg gaaagaagaa      2880
     tgaaacacga cccgcaattg gcagacgccg taaggaataa agtccatgat cacctagcta      2940
     aaggatatat tcggaaattg atcaacgagg aagttcaggc agaatatcca cgcatatggt      3000
     atttgccgat gtttccggta gtcaacccaa acaaacctag taaaaccagg ctggtttggg      3060
     atgcagcggc aaccgcccat ggaatttcat tgaactccgt actgttgaaa ggaccagatc      3120
     aactgacctc tctgctttca gtgatgatac aatttcggga gtataaaatt gctatttgtg      3180
     gtgacattcg tgaaatgtat catcaggttc aaatgcgaaa agatgaccag caatgccagc      3240
     gcttcttttg gaaggaaaac agcactgatg ccgagccaag tacatacatt gtacaagtta      3300
     tgactttcgg agcctgttgt tcaccaagta cggcgcagta cgtgaaaaac ctacacgcaa      3360
     gcaagtttga gcaagagaat ccagttgccg cggcagtaat cgttaagaga cactacgttg      3420
     acgatatgct actaagcgtg gagcaggaag atcaagcagt ccagctgaca cgagacgtaa      3480
     agcaaatcca tgcgtcagca ggcttcgaaa tccgcaattg ggcatccaat tcatctgcgg      3540
     tattgaagca gttgaacgaa ccttctacgg cagaaaagag cttcagcgaa gatagtgtgg      3600
     tcgagaaaat tcttggtata tggtggaaca catcttcaga tcacttcact ttcaagatct      3660
     ccgaccgtat agacaagcaa ctactatcag gtgatcgtcg gccaacgaag cgtcaagttc      3720
     tacggacctt gatgatggtc ttcgatccgc taggccttat tggccacttt atgatgctgt      3780
     taaagacgct tcttcaagaa atttggcgct cttcggttgg atgggatgac atgatcaacg      3840
     acgaacactt tgaaaagtgg tcaacctggt gcgcagttct tcctacaata acagaactat      3900
     tgatacctcg atgttaccgt tcactaacgt ccacatctga agcgaacata atccaactac      3960
     atatcttcgt cgatgctagc gaagcaggat tcgctgcggt ggcgtaccta aggttcaacg      4020
     aaggatcgat catcgaatgt gcgttactgg gatcaaagac aagagtctca ccgttaaagt      4080
     tcctgtccat tcctcgttcc gagcttcaag ctgctgttct tggcgtccgt ttagcagaga      4140
     ctatctgtaa ctcattatcg ttcaaagtgc gtcaacgatt cttctggaca gactctaagg      4200
     acgttttgtg ctggctaaac tccgatcacc gtcgatatag tcagtttgtc gcctttcgag      4260
     tgagtgaagt cttagaatct tcagatgtgc aggaatggaa ttggattcca accaaacaaa      4320
     acgtggcgga tgagggtact aagtggcacc gtaacccgga tatgtctgcg tcaagccgct      4380
     ggtttcgggg acctgatttt ttgtggaaaa caattgagtg ttggcccgaa tccaaacacc      4440
     gcataggaag caccaacgaa gaattacgcc cacatttgct acttcacacc acggttgttg      4500
     cgtgtcctgt tgacattgcc cgcttctctg attggcgaaa actgctccgt tgtacagcct      4560
     acgtttttcg ctacatacgc aatttgggat tctgcacgaa aaagttgaat cgaatctacg      4620
     gaccgttgaa ccaacaagag ctgagggatg cagaaagcta cctttatcgt gaagcgcaaa      4680
     aggcggccta ttcagatgaa attgccgttt tatccagaga tcggaactcc aaaaatccgg      4740
     acaaacgcct accaaaaagc agtccgctct ttcgccagtg cgtctttcta gacgaagcga      4800
     atatcatcag aattcgaggt agaacgcaag cctgtctatt catcgcacgc gacgccgtag      4860
     aaccaatcgt ccttcctcgc gatcatccga tcaccaagct cattctcctg gactttcaca      4920
     ggcgattcaa tcatcagaat catcaaacaa ttatcaacga aatacgtcaa cgtttcagaa      4980
     ttcccaaact gaaagtagcg tatagaaaga ttcgtagaga gtgtcaagag tgtaagaata      5040
     actatgccac tccccaacct cctctcatga gcgatttgcc tccgcaacgt ctcgctgctt      5100
     tctcacgacc gttcacattc atgggagtcg actacttcgg ccctatgatc gtcaccgttg      5160
     gacgccgctc agaaaaacga tggggagttc tggcaacatg cctcacgata cgcgccatcc      5220
     acatagaact agcccacaca ctgacaaccg actcatgtat cctggcgtta cgaaacatta      5280
     tggccagaag aggaacgccc gctgtcattt tcagtgaccg cggcacaaat tttcaaggtg      5340
     ccagtaaaga gttaaaagaa gccttacaga atattgatca agaacaactt atcaaggaat      5400
     ttaccacgcc taatactgaa tggagcttta ttccaccagc gtctccgcac atgggcggtg      5460
     cgttggagcg cctgatccgt agcgtaaaaa ccaatttgtc caaactgcaa tggagaaggt      5520
     cacctacgga tgaagtgctg aacagcactt taattgagat tgagaatgtg attaattcaa      5580
     gaccattaac tgacatccca atagacgacg ttgacgagtc cccggtacta acccctaacc      5640
     atttcctgtt ggggacttct aatggaatga aaccgtgggt accattcagc gatagtgcaa      5700
     ctgtactccg aaactgtttc aagcagtcgc agatcatggc tacagaattc tggcaaaggt      5760
     ggttgagaga ctacttaccc gtaattactc gacgcagcaa gtggttcacc acggtgaacc      5820
     caatcagagt ggacgacgta gtggttattg tagacccgaa ggctcctcgc aacaactggc      5880
     cgctaggacg tatcattgcg acaagatcag gaccagacgg ccaagtgaga agcgccacag      5940
     tgcaaaccag taacggtatc tatgagcgtc cttctgtaaa gctcgcagtg ctcgacgtag      6000
     gcgttagaaa ccaagacgct tcaggatgac ctttcgcgca ttctgggggg ac              6052
//
ID   BEL-854_AA-LTR repbase;    DNA;    INV; 488 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-854_AA-I;
KW   BEL-854_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-488
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-488
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2988-2988 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 488 BP; 156 A; 108 C; 80 G; 144 T; 0 other;
     tgtaagcgcg cccgccgatc atcgagccca ttgtgcttcg tctgccaacg tgctacccag        60
     aaggactacc atccgtatga caacaccctt tgacgtcgaa gtcaaacgtt aatgattgca       120
     gaaaacgtgc agactatcta ctaagtgctt ttctaaaata tcctaaatct actgtttaac       180
     ttaaactatt attatgtaat acgtgaattt cataagatct acttgaattt acccacttag       240
     actataaagt taatcttaaa ctaaacgtat ctcagctctc agccgtcaac ggctgcagta       300
     cactagtcga agtaatcatc ttacattttt ccacaataac gctaaatctg ctcaccgagc       360
     aattggaatg ctaaggacga gttcgttgaa gagtagtaaa attactaaaa gaatttgtaa       420
     ctctttaata caataaagtg ttgatgaact tggtaatttt ggcgaccacc gcagctattc       480
     tttcaaca                                                                488
//
ID   BEL-855_AA-I repbase;    DNA;    INV; 5754 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-855_;
KW   BEL-855_AA-I; BEL-855_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5754
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5754
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           492..1391
FT                 /product="BEL-855_AA-I_1p"
FT                 /translation="MPDKKLKAKELKRKNVIEGLKRIEGFLEKYDPAQHAP
FT                 EVRLRLERLEKLMETFEEVQCEYEELAQSDYEVTEEFAQANLDYRAKIEEQ
FT                 YFRVKAGLLTKIPETAPPSSSVASTSFAHAPAPSPLANVKLPTITLPEFDG
FT                 DFNGWLTFHDTFVSMIHTSSEISCVQKFHYLRAALKGEAANLIQSITITAG
FT                 NYAVAWETLVKRYSNKVLLRKKHIRALLKYPKIANHSVDSLHRIVDEFQRH
FT                 TKVLEQLGEPVAQFSSILMEILEDKLDDASLEAWEQSISSDPQPTYEKMIE
FT                 YLQKSARV"
FT   CDS           1395..5672
FT                 /product="BEL-855_AA-I_2p"
FT                 /translation="FFSKTFPMCPACEKQKHSLMDCHVFKGMNVAARLKVV
FT                 NDKRLCSNCFRSDHFARACRSKFSCKHCSKRHHSMIHPGPSDNRQADADVR
FT                 SRVAIPAGENPPSIPNPLVSAAATTFPIESSAGSVIANPAVKTTHANVILS
FT                 TVVLIVVDAYGQEHIARALLDSGSQPNAISERLCQLLHLPRKAMNVSISGV
FT                 DGTITNAKYQIRAEIRSRVIQFKQTMDFLVLRKVTSDAPPASFDTTNWNIP
FT                 DTLPLADPEFSTTRRIDMIIGAGQFFDFIREGKVRLAADLPLLVETVFGWI
FT                 VTGTLKDTAENTEAFPIACHVATVTPIDDLLERFWKVEEINGSNYSVDEQR
FT                 CEELFRETVSRDQEGRYIVQMPKHSQYKQMIGASKMYALRRFKWLEQMLEK
FT                 KQDLKSQYHNFMREYLDLGHMHEVLQDDDTLLHECYLPHHPVIKESSTTTK
FT                 VRVVFDGSAKTSTGKSLNDSLLVGPVVQDDILTIVVRFRQFPVSLVTDAEK
FT                 MYRQVWVHPEDRRLQRILFRFDSSQPIKVFELDTVTYGLAPSSFLATRTLL
FT                 QLVEDEGAAHPNASRAIKKNVYVDDYIGGEFSVQGAIHLQVELTQLMQKGG
FT                 FRLRKWVSNSAEVLNNIPKDLLGTHSALQFDQDETIKTLGILWEPEADVFR
FT                 FNVSVSLTSQDATKRSILSAIAQLYDPLGLVSPVVVQAKMMMQQLWLLSLN
FT                 WDDQVTPEMQRKWDRFCEQLQQLSNFRIDRCAFTPNFSNIEIHTFTDASDA
FT                 AYGACLYVRSESTDGSIKVSLLASKSKVAPLKRLSIPRLELCAALVGSRLY
FT                 EKVILAIDVPIQSSYFWSDSKIVLQWMKSPPRTWKTFVANRISEIQSTTHG
FT                 SRWLHVAGEENPADLVSRGVSASDLVNNEKWKFGPSWLRDPKSSWPTQVYE
FT                 ATDLPADELEQKKTTMLAITASPDPLFLRYSNYFRLLKLVGFILRFAKNSR
FT                 TKPENRKCSNVLDADEINAAKLVLAKLVQKESFSEELKMLQRGKRVSNRSK
FT                 LRLLNPYLDSDGLIRVGGRLQRSRETFNVQHPIVIPGFHPFSRLLIKYHHE
FT                 KLIHGGAMVTLAVVRDEFWPLNGRKAVRSVLRMCFRCYRAAPRTIEQPIGQ
FT                 LPPARVTAGEAFECTGVDYCGPVYLKPVQRKAASRKAYICVFVCMSTKAVH
FT                 LELVGELSTTAFLMALNRFIWRRNKPKHMYSDNGTNFIGAKNALNQLYVML
FT                 QPGTAHDKIKQSLAQDGIQWHLIPPRAPNFGGLWEAAVKVAKRQLVRQLGD
FT                 SLLSYEEMTTVLVSVEGSMNSRPLMPLSDDPNDCRALTPAHFLVQNMIRPL
FT                 PEPDVRNVPLNRLGQYERLQSHSQRFWHQWRSEYLKELQSLYKVDPARFKI
FT                 DVGSMVILKDEALPPAKWPLARVVDTHPGPDGIVRVVTLRTSGGEFKRAVS
FT                 KICALPCIDDEY"
XX
SQ   Sequence 5754 BP; 1584 A; 1318 C; 1335 G; 1517 T; 0 other;
     ttaaatggtg ccgtgaccag gatcccgtaa gacatcccta tccaacctgg cttcatcagt        60
     aaactgaatc tatcgtattg tcaataccga cactcgactt tcaccccgtc cgacgatcac       120
     atcaacgtat cgtaatttct gcttgtttat agtatacaag gcctcctgag attggaggta       180
     tcaggtgagt accattccaa tcaatctatt cccattttgc ggtgcttccg gatcttccgt       240
     cgtccgtttc agattggtgc agaaatataa cctcaaccag gctagtggca gcaaaggctt       300
     gcgctctgat atcatccaag cattctcgtg gtggatcatt gttcccgctt gactaataca       360
     aggcctcctg agattggagg taccaggtta gtacctttcc aatcctacca ccaaccggct       420
     tgcggtactt ctggatcttt ttcgaccatt tcagcgtatc ataattgctc gcgctgcact       480
     attcgcccat aatgcctgat aagaagttga aagccaagga gttgaagcga aaaaacgtca       540
     tagaaggatt gaagcgcatc gaaggttttt tggagaagta tgatccggcc cagcatgccc       600
     ctgaagttcg tctgaggttg gaaagactag agaagctgat ggaaacattc gaagaagtac       660
     agtgcgaata cgaagaactt gcacagagtg attatgaagt tactgaggag tttgcacagg       720
     caaatctgga ctatcgtgca aaaattgagg agcaatattt ccgggtgaag gccggtttgc       780
     taacgaaaat accagaaact gccccaccat catcgtccgt tgcgtccacc agcttcgctc       840
     atgcacccgc accatccccg ctggctaatg taaagctgcc gacaattacg ttgcctgaat       900
     tcgatggcga cttcaacggt tggctaacct tccacgacac ttttgtctcc atgattcaca       960
     cgtcgtccga gatatcatgc gtacagaagt tccactacct ccgagctgcc ttgaagggag      1020
     aggcagcgaa tttgatccag tccataacca tcactgccgg caactatgct gttgcttggg      1080
     aaactctagt aaagcgctat tccaacaagg ttttgttgcg aaagaagcat attcgagcac      1140
     ttttaaagta tcccaaaatc gccaatcatt ccgtggactc gttgcatagg atcgtggatg      1200
     aattccaaag acacacgaag gttttggaac agctaggaga gcctgtagcg cagttcagtt      1260
     ccattctgat ggagattctt gaagacaagc tagatgatgc ttcgttggag gcatgggagc      1320
     aatcaatttc ttcagacccg caaccaacct acgaaaaaat gattgaatat ttacaaaaga      1380
     gtgctcgtgt atgattcttc agcaagactt ttcccatgtg tccagcttgt gagaagcaga      1440
     agcattcgct tatggattgc catgttttca aagggatgaa tgtcgcagct cgactaaagg      1500
     tagtcaacga caaaaggtta tgcagcaact gttttcggag tgatcatttc gctcgagcgt      1560
     gtcgatccaa attctcctgc aagcattgtt ccaagcgaca tcattcaatg attcacccag      1620
     gaccgagcga caatcgccaa gctgatgccg acgtgcgtag ccgagttgca atacctgccg      1680
     gtgagaaccc gccatcaatt ccaaatcctt tggtgtctgc tgctgcaact acattcccta      1740
     ttgagtcatc cgccggttct gtgatagcca atccagcggt gaagacaacc catgcaaatg      1800
     tcatattatc cacggttgtt ctgatagtcg tcgatgcgta tggccaagaa cacatagcac      1860
     gagcattgtt ggactctggc tcgcaaccga atgcaattag cgagcgctta tgccaattgc      1920
     tccatcttcc ccgtaaagcg atgaatgttt caatatctgg cgttgatggt accattacca      1980
     atgccaaata tcaaatacga gcagaaatcc gctctagagt cattcaattt aaacaaacga      2040
     tggattttct tgttctgcgt aaagtaacca gcgacgcccc tccagcttcc ttcgatacta      2100
     caaattggaa cattcccgac accttaccgc tggcggatcc cgaattcagt actacccgac      2160
     gaatcgacat gataattgga gcggggcaat tcttcgactt cattcgagaa ggaaaagttc      2220
     gcttggccgc agatctccct ttactggtag aaaccgtctt cggctggata gtgactggca      2280
     cgttgaagga taccgcagaa aataccgaag catttccaat agcttgccac gtggcgaccg      2340
     ttactccaat agacgactta cttgagcgat tttggaaagt cgaggagatc aatgggtcaa      2400
     actattctgt cgatgagcag cggtgcgaag aactttttcg agaaaccgta tccagagatc      2460
     aggagggtcg ttacattgtg cagatgccga aacattccca atacaagcag atgatcggag      2520
     cgtcgaaaat gtatgccttg cgtcgcttca agtggttaga gcagatgctg gaaaagaaac      2580
     aagatcttaa atcgcaatat cataacttta tgagagaata tctcgactta ggacatatgc      2640
     atgaagttct gcaagacgac gacactctac tacatgaatg ctatcttcct catcaccccg      2700
     taattaagga gtccagcacc acgacgaagg ttcgagtggt gtttgatggt tcggcaaaga      2760
     cgagtactgg aaaatctttg aacgattctt tattggtggg tccagttgtt caggatgaca      2820
     tccttacaat tgtagtgaga tttcggcagt tcccggtgtc tctagtgact gacgcggaga      2880
     aaatgtatcg ccaagtgtgg gtgcatcctg aagatcgtcg attgcaaaga attttattcc      2940
     gttttgacag cagccaaccc ataaaagttt tcgaattgga caccgttact tacggattag      3000
     ctccctcctc gtttttggct acccgaactt tactacagct ggttgaggat gaaggcgcgg      3060
     cccaccctaa tgctagccgt gcgatcaaga agaatgtgta tgttgatgat tatatcggtg      3120
     gagagttttc cgtacaaggg gcaattcatc ttcaagtgga gctaacgcag ttaatgcaga      3180
     aaggcggatt tcgattacga aaatgggtat caaactcagc tgaagtgctg aacaatattc      3240
     ctaaagacct ccttggtact cattctgcac tccagttcga tcaggacgaa accattaaga      3300
     ccctaggaat cctctgggag ccagaagcgg atgtttttcg atttaacgtt tccgtttcac      3360
     tgacatcaca agatgctaca aagcgtagca tactttctgc cattgctcaa ttgtacgatc      3420
     cgttaggcct ggtgtctcca gtagtcgttc aagcaaaaat gatgatgcaa caactgtggc      3480
     tcttgtcgtt gaactgggac gatcaagtaa ctccagagat gcaacgcaaa tgggatcgat      3540
     tttgcgagca acttcaacag ttatcaaatt ttcgaatcga tcgatgtgcc tttacaccga      3600
     acttcagtaa cattgaaata catacgttca cagacgcttc agacgcagca tacggtgcct      3660
     gcttgtacgt acgctctgaa tcaacggacg gcagtatcaa ggtgagttta ctggcgtcta      3720
     aatcgaaggt cgccccattg aagcgtctca gtattcctcg acttgaactg tgtgcagcac      3780
     tagttggttc ccgtttatac gagaaagtta ttttggcaat cgatgttcca attcagtcaa      3840
     gctatttttg gagcgattcg aaaattgttc tgcaatggat gaagtccccc cccagaacat      3900
     ggaaaacgtt cgttgcaaat agaatctcag aaattcagtc cactactcat ggctcgagat      3960
     ggttacatgt tgctggtgaa gaaaaccctg cagatttagt atcccgagga gtttctgcaa      4020
     gcgatttggt gaataacgaa aagtggaaat tcggtcccag ttggcttcga gaccctaaat      4080
     catcgtggcc cactcaagtt tacgaagcta cagatctgcc ggcagatgag ttggagcaga      4140
     agaaaaccac catgctggca atcacagctt ctccagatcc tttgtttctg cggtattcaa      4200
     actatttccg tttgttgaaa ttggttggtt tcattcttcg gtttgcaaag aattcacgca      4260
     ccaaaccaga aaaccgaaag tgcagtaacg tcctggacgc tgatgagatt aacgctgcaa      4320
     aactggtact ggccaaactg gtgcaaaaag aatcattttc cgaggaactg aaaatgttgc      4380
     agcggggtaa acgtgtttcc aatcgatcta agttaagatt gctaaaccct tacttggata      4440
     gtgatggatt gatacgcgtt ggtggccggt tgcaacgatc aagagagacg ttcaatgttc      4500
     aacaccctat cgttattcct ggcttccacc cgttttcaag actcctcata aaatatcatc      4560
     acgaaaagct gattcatggt ggagctatgg taacgcttgc cgtcgttagg gacgagtttt      4620
     ggccactgaa cggccgtaaa gcagtaagaa gtgtacttcg aatgtgcttt cgatgttata      4680
     gagcagctcc tcgtacgata gaacagccta ttggacaact acctcctgcc cgtgttacgg      4740
     cgggcgaagc gttcgaatgt accggcgttg attattgtgg tccagtttat ctcaaacccg      4800
     tccaacgtaa agctgcatca agaaaagcat acatttgcgt cttcgtctgc atgagcacca      4860
     aggcagttca tttagagttg gtgggtgagc tctcaacaac tgcattcttg atggctctga      4920
     atcgattcat ttggaggaga aataaaccta aacacatgta ctccgataac gggactaatt      4980
     ttattggagc taaaaatgca cttaatcaac tttatgtcat gcttcagcct ggaaccgctc      5040
     acgataaaat caagcaaagt cttgcgcagg atggaataca gtggcattta atcccgccaa      5100
     gagcgccgaa cttcgggggt ttgtgggagg cggcagtcaa agtcgcaaaa aggcagctcg      5160
     tgagacagct tggcgactct ttattgtcgt atgaagaaat gaccactgtt ctcgtttctg      5220
     tagaaggtag catgaattca cgacctctca tgccgctgtc ggatgatccc aacgattgcc      5280
     gtgcattgac tccagcgcat ttccttgtac aaaatatgat ccgtccactt ccggaacctg      5340
     acgttcgcaa cgtgccgctc aatcgtctgg gacaatatga acgtcttcaa tcacattctc      5400
     agcggttttg gcaccaatgg agaagcgagt acttgaagga attgcagtcg ctatacaagg      5460
     ttgatccagc tcgcttcaaa atcgacgttg gcagtatggt gatactcaag gatgaagctt      5520
     tgccaccagc taaatggcca ctagcacgag ttgtcgatac acatcccgga cctgatggca      5580
     tcgtgcgggt agtcaccctg aggacatctg gaggagaatt caaaagagct gtatcgaaga      5640
     tttgtgcgct accatgtatt gatgatgaat attgattgta aggtcaagat atgtgaattt      5700
     gattataatg ttaagttgta agtaatttga aatgtatttc aaaggtggcc ggta            5754
//
ID   BEL-855_AA-LTR repbase;    DNA;    INV; 450 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-855_AA-I;
KW   BEL-855_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-450
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-450
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2989-2989 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 450 BP; 117 A; 109 C; 86 G; 138 T; 0 other;
     tgttaggtat gaaaaatcaa gcgctttctg ttgaaatgtt tcatcattgc aataattcaa        60
     gccacccatt ttcgtctgag catagaacga tgacacgtat gtgtttgttt accgcccgct       120
     gtaaatcgtt attgcttttt tttcttacca cttaccagtt tccgcttctt aaataaaatg       180
     aattagtatc catccgccat cacgcaataa agtttgttca gttagttcaa tcagttcaca       240
     agtgtttttg gtgtcgaaac cgaaggaaga tttcccgtct cgaaagtcgg ctgagcatct       300
     acgtcgtgca tcagtgcaca aaccccggct agcagttgct tttctcccgt tctattccca       360
     tcgaagcacg ttgtccagtt cccgaagtgt ctggagtgca gcgagcgaga tcccacctta       420
     atcgatgaaa gattcaaccg aaacccatca                                        450
//
ID   BEL-856_AA-I repbase;    DNA;    INV; 5971 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-134_AA-LTR;
KW   BEL-856_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5971
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5971
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other. LTR is similar to BEL-134_AA-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..866
FT                 /product="BEL-856_AA-I_1p"
FT                 /translation="MGHDKALTAMDAECLYCNKNETEDVNWVQCGTCELWA
FT                 HFSCAGVNENIAELEWHCSRCLPPVIQHLAVPNPKSTKQRSSKNKSGSKGD
FT                 TGSVRSQETLSDLSDQQYDEEQLAREREFARKMASRELRLRREMEWNTKQL
FT                 EMERKMREMELKAKQRMQEEKIKQEQELLDQQLASERAFVQQRDAIRSQMN
FT                 SSLQRIQSIMDEKDAVPVEEPGKKVKTWLNENVVFPPVADRRGAYEKGGNP
FT                 QPAQRINASINKGISVKSLSGRSRH"
FT   CDS           870..5969
FT                 /product="BEL-856_AA-I_2p"
FT                 /translation="GHDYVATDTEEEEYDSENDSVHDVQTKRDEVSSNKGL
FT                 EKFKLTREQIATRKVVSRNLPKFNGDPEMWPLFISSFEHTTKACGFSNIEN
FT                 LDRLLNSLEGEALNAVRSILVLPDSVPEVISDLRKLFGQPEKLLRTLLNKV
FT                 RNARPPTTEDFKTFISFGITVKQLCDHLEASRLHDHLRNPLMVQQLVEKLP
FT                 PDYQMKWVEYKRGNKGTPLRVFTNFITGIGDVASEAAAYTSKVNEPRQIAK
FT                 AISTKKKEFVHAHDWAPTRSEEMHKEKYNRPCWICKRTDHRIRFCDDFRKM
FT                 NIADRLRAVEKLRLCGLCLNKHGDNPCESKLCCSMHNCNGNHHALLHRAEE
FT                 FVQLQSVKNNNHQGSDRSVIFRMVPVTLHYGRRRYDTLAFLDEGSSTTLVD
FT                 QVVADRLMLKGEPEPLIVTWTGNISRFENCSEKVKVWLSVNGSSDQIPLED
FT                 SRTVSELVLPKQDLRYAEVAKQYPHLAGLPVKDYMEGQAKILIGLDNLHLF
FT                 APIESRIGKWNEPIAVRSKLGWTVYGPGNRKPSVSTYLNLHSVTPVSNQQL
FT                 HDLMREQYVLSELGVSSFAIPESEEEQKAKSILKTTTRRVGDRFETGLLWR
FT                 KDNRQFPNSYPMAIRRMKALERKLQKNPTLKQKVCEMVSDYELKGYAHKIT
FT                 DTEQLETPISSVWYLPLNVVQNPRKRGKVRLVWDAAATVEGTSLNSELLKG
FT                 PDMLVPLPKVISCFREGPVAFGGDIQEMYHQIRIRSDDKQAQRFLFRSNPM
FT                 DVPQVYVMDVATFGATCSPCSAQFVKNLNAEHYAEEYPDAVRAIVKQHYVD
FT                 DYYDSVDSVEEAIQRAKEVKLIHSKGGFHIRNWISNSAAFMEEFGETNATE
FT                 AVYFNRDKGTEYERVLGIVWEPVEDVFCFATATKVEFSEVIDGRECPTKRI
FT                 VLSFIMAQFYPIGLITPVTVRGKMLVQDLWRTGCEWDERIDEVSEEKWRRW
FT                 IKMMHKIGSFKLPRSYFGNSKLNEIEDLQLHIFSDASETAYGCVAYFRAIV
FT                 RGEVRCALVMSRSKVAPLKQISIPRLELLAAVLGARLARTVQENHNLKVDR
FT                 VVYWTDANVVLSWIRSDQRRYKQFVGFRIGEILSLTKLTEWRWVPTRSNVA
FT                 DQLTKWGKDPEMHPESSWVRGPTFLYHDEQQWPKKDLPPANTTEELRVHLL
FT                 IHDVKLQQEIIDVTRIEKWTVLVRTVATVYRFISNCRLKCQGRSIETLKAT
FT                 EQHLRILKQYNVNCVRVPLRQIEYESAERYLIKMAQAEGFADELKVLKRNK
FT                 DRPVEHWLVLEKSSPLSKLTPLIDEEGLIRMEGRCERAEILPFDLRFPIIL
FT                 PANSRITRMIVQHFHDKCGHGYRLTVKNQLRQLYHIVHVDSVVKKVVSSCM
FT                 WCKVRRNRPRVPREAPLPVQRLTPNLRPFSFVGVDYMGPFEVTVGRHREKR
FT                 WVALFTCLVTRAVHLEVTYGLTTQSCLMAIYRFIGRRDWPIEFISDNGTNF
FT                 QGASKALFRSIDLDCADEFTNARTKWTFNPPAAPHMGGVWERLVRSVKEAL
FT                 KALDDGKRLTDEILQTVIVEAEDMINSRPLTYVAQESDEPEALTPNHFLRG
FT                 IPSYRHQVACPPPNPAEALRDSFKRSQQIANELWKRWISEYVPTLNQRTKW
FT                 FGETRPLKVGDLVYIVEGNNRKCWVRGIVEEPIVSSDGRIRQAWVRTRTKR
FT                 YKRAVSSLAVLEIEAGNADPQENSGAGYGPG"
XX
SQ   Sequence 5971 BP; 1849 A; 1217 C; 1528 G; 1377 T; 0 other;
     ataatcaaag aatagttctg gatcgccttg ctcgccgtct aaaaacctcg cacaactcga        60
     aagataacat gggtcatgac aaggctctta ccgctatgga cgcggaatgt ttatattgca       120
     acaagaatga aacggaagac gttaactggg tccagtgcgg gacgtgtgag ctatgggcgc       180
     acttttcttg cgctggagtt aacgaaaaca tcgcagagtt ggagtggcat tgctcgaggt       240
     gtttgccacc cgttatacaa cacctagcgg tacctaatcc aaagtcgacg aagcaacgtt       300
     cgagcaagaa caaatccggt tcaaaaggcg atactgggtc tgtccgaagt caagaaaccc       360
     tatcggatct tagtgaccaa cagtacgatg aagaacaact tgctcgtgag cgagagtttg       420
     caaggaagat ggcaagtcgg gagttaagat tgcgtcgtga gatggagtgg aacacgaagc       480
     agttggaaat ggagcgaaag atgcgcgaaa tggaacttaa agccaagcaa aggatgcagg       540
     aagaaaagat aaagcaggaa caagagctat tggaccaaca actagcatcg gaacgagcgt       600
     tcgtacaaca acgagatgct atccgaagcc agatgaacag cagtcttcaa aggatccaat       660
     caatcatgga cgaaaaagat gccgtgccag tagaagagcc tggaaagaaa gtgaagacat       720
     ggcttaacga gaatgtagtt ttcccaccgg tagcagaccg acgtggtgcc tatgaaaagg       780
     gaggaaaccc gcaacccgcg caaagaatca atgcctcgat taataagggc atcagtgtga       840
     aatcattgtc cggccgaagt cgtcattaag ggcacgacta cgtcgctacc gacactgaag       900
     aagaggaata tgattcagaa aatgatagcg tgcacgacgt acaaacaaaa agagacgaag       960
     tttctagtaa caaagggttg gagaaattta agttgacacg agagcaaatt gctacaagaa      1020
     aggtagtatc tcgtaactta ccaaagttca atggagatcc agaaatgtgg ccgttattta      1080
     ttagtagttt tgagcacaca acgaaagctt gcgggttctc taacatagaa aatctggatc      1140
     gattgcttaa cagcttagaa ggagaagctc ttaacgcagt aagaagcatc ctggtgcttc      1200
     cagactcagt gcctgaagtt ataagcgatt tacggaaact gtttggtcag ccggaaaagt      1260
     tgttgagaac attattgaat aaagtaagaa atgctcggcc tccgacgaca gaagatttca      1320
     aaacgttcat cagctttgga atcacagtta aacaattatg tgaccactta gaagcatcac      1380
     gactgcacga ccatctaagg aatccactaa tggtacaaca attagtggaa aagctgcctc      1440
     cggattatca gatgaagtgg gtggaataca aacgtggcaa caaaggtacg ccgttgcgcg      1500
     ttttcactaa tttcatcacg ggcattggag atgtcgcatc cgaagctgca gcctatacat      1560
     cgaaggtaaa tgaaccaagg caaatcgcga aagccatatc aaccaagaaa aaggagttcg      1620
     ttcacgccca cgattgggcg cctacacgca gtgaagagat gcataaggag aagtacaata      1680
     gaccatgctg gatctgtaaa cgaacagacc atcggattag attctgcgac gattttagaa      1740
     agatgaatat tgcagatcga ttacgggcag tagaaaaact acgattgtgt ggtctatgtc      1800
     ttaacaagca tggtgataac ccgtgcgaat caaaattgtg ctgttccatg cacaactgta      1860
     acggcaatca tcatgcatta ttgcatcggg ccgaggagtt cgtacaactc caaagcgtaa      1920
     aaaacaataa tcatcaggga tcagatcgat cggtaatctt tcgcatggta ccagttactc      1980
     tacattatgg gcgtagacga tacgatacgc tggcattttt ggacgaaggt tcgtccacta      2040
     cgctagtaga ccaagtagta gcagatagac taatgcttaa aggagaacct gagccgttga      2100
     ttgtcacctg gacaggcaac attagccgat tcgaaaattg ttctgagaag gtaaaagttt      2160
     ggctctcggt gaatggatct agtgatcaaa ttcctttgga ggactcacgc acagtatcgg      2220
     agctagtact tccaaaacaa gacttgcggt atgccgaggt agcaaagcaa tatccccatc      2280
     ttgcgggcct accagtgaaa gactatatgg aagggcaagc aaagatcttg attggactag      2340
     acaatttaca tctgtttgcg ccaattgaat cgaggattgg caagtggaat gaacctattg      2400
     ctgttcgatc aaaactaggt tggacagtat acggaccggg aaatcgaaag ccaagtgtaa      2460
     gtacctatct gaacctgcac tcagtgacgc cagtgagcaa tcaacagtta catgatttga      2520
     tgcgagagca gtatgttcta agcgagctag gtgtatcgtc attcgcaata ccggagtcag      2580
     aagaagaaca aaaagcaaaa tcaatcctga agacgacaac cagacgggta ggagatcgat      2640
     ttgaaactgg attattatgg cgaaaagata atcgacagtt ccccaatagt tacccaatgg      2700
     ctatacgtag gatgaaggcc ctcgagcgaa agcttcaaaa gaatccaacg ttgaaacaaa      2760
     aggtttgtga gatggtttct gattacgagc tcaagggcta cgcgcacaag ataacggaca      2820
     cggaacaatt ggaaactcca atctcatcgg tctggtatct tccgctaaac gtggtacaga      2880
     acccaaggaa acgtggtaag gtgcgcctgg tgtgggatgc ggcagccaca gtcgaaggta      2940
     cctctctgaa ttccgagtta ttgaaaggac cggatatgct tgtgcctctt ccaaaagtta      3000
     tcagttgctt ccgggagggt cccgttgcat tcggaggaga tatccaagaa atgtatcacc      3060
     agataagaat tcgatctgat gataaacaag cacaacgctt cctatttcgt tctaatccga      3120
     tggatgtccc acaagtgtac gtaatggatg tagccacgtt tggcgccact tgttcgcctt      3180
     gttccgctca gtttgttaaa aatttaaacg cggaacacta cgcggaggag tatcctgatg      3240
     ctgtaagggc tattgttaaa caacattatg tggacgatta ttacgacagc gtggactcgg      3300
     tcgaggaggc gatccagaga gctaaggagg tcaagcttat ccattcaaaa ggcggattcc      3360
     acataagaaa ctggatttca aactcggcgg cgtttatgga agagtttgga gagacaaacg      3420
     cgacagaagc tgtatatttc aacagagaca agggtactga atacgaaaga gtcttaggca      3480
     tcgtttggga accagtagag gatgttttct gcttcgctac tgctaccaaa gtagagttca      3540
     gtgaagtcat agatgggaga gaatgtccga ccaaacgaat tgtgctgagt tttatcatgg      3600
     cacagttcta tccgattggc cttatcactc ctgtgaccgt gcggggcaag atgttagttc      3660
     aagatctctg gaggactgga tgcgaatggg atgaaaggat cgatgaagtg tcggaagaga      3720
     agtggagacg gtggataaaa atgatgcaca aaattggatc gttcaagttg ccgcgaagct      3780
     acttcggaaa tagcaagttg aacgaaatag aagacctgca gttgcacata ttctctgatg      3840
     caagcgagac ggcatatggc tgtgtagcat actttcgcgc tattgtacgc ggagaggtaa      3900
     ggtgtgctct agtcatgagt cgatctaaag ttgccccatt aaagcagata tcaattccac      3960
     gcttggaact gctggcagca gttcttgggg caagactggc gagaacggtg caagagaacc      4020
     acaacttaaa agttgataga gtggtgtatt ggaccgatgc aaatgtggta ctttcgtgga      4080
     tcagatctga ccagcgcaga tacaagcaat ttgtcggctt tcggattggc gaaattctca      4140
     gcttaaccaa gctgacagaa tggcgttggg tgccaacaag gtctaacgtg gcagaccaac      4200
     tgacaaagtg gggaaaagat ccagaaatgc atcctgaaag ttcatgggtt cgtggtccaa      4260
     catttctgta tcatgatgaa caacaatggc caaaaaagga tttgcctcca gcgaacacaa      4320
     ctgaagagct tcgagtgcat ttactaatac acgacgtgaa actgcaacaa gaaattatcg      4380
     acgttacacg catagaaaaa tggacggtac tagtgcgaac cgttgcaaca gtctaccgat      4440
     ttatctcaaa ctgtagattg aaatgtcaag ggcggtctat agaaactctc aaggctacgg      4500
     agcaacattt gagaatcctg aagcagtaca atgtgaattg tgtccgtgtt ccactgcgac      4560
     aaattgaata cgaatcagct gaacggtact tgataaaaat ggctcaggcg gagggtttcg      4620
     ctgatgagct taaagtgcta aagcgtaata aagatcgccc ggttgaacac tggctagttc      4680
     tggaaaaatc cagtcctctg agcaagttaa ctccactaat cgacgaagaa ggactgattc      4740
     gcatggaagg tcgatgtgag agagctgaga ttctaccgtt tgatttaaga tttccaatca      4800
     tcctgccagc gaacagtaga atcacgagaa tgatcgtcca acacttccat gacaagtgcg      4860
     gtcatggata cagactcaca gtaaagaatc aattgaggca gttgtatcac attgttcacg      4920
     tagattctgt ggtgaagaag gtagtgtcct cttgtatgtg gtgtaaagtt cgacgtaacc      4980
     gtcctcgggt tcctcgcgaa gctccattac cggtgcagcg attaacacca aatcttcgcc      5040
     cattcagttt cgtcggggtt gactacatgg ggccatttga agtaaccgta ggacgacaca      5100
     gagaaaaacg ctgggttgcc ctttttactt gtctggtaac tcgggcggtt cacctagaag      5160
     taacgtatgg tctcactaca caatcgtgtc taatggcgat ctaccgcttt ataggtcggc      5220
     gggactggcc gatagaattt atttccgata atggaacaaa ttttcaaggg gcgagcaaag      5280
     cactctttcg gagcatcgat ctggactgcg ccgacgaatt cacgaatgcg aggacaaagt      5340
     ggacattcaa tcctccggcg gctccccata tgggaggagt atgggagcgc ctagtacgct      5400
     ctgtgaaaga ggccttgaag gcattggacg acggaaagcg tttgacagac gagattttgc      5460
     aaacagtcat cgtggaagca gaagacatga taaattcacg accgctaacg tacgtagctc      5520
     aagaatcaga tgaaccagaa gcgctgactc ctaatcattt cttgagaggc ataccatcat      5580
     atcgacatca ggttgcttgt cctccgccga atccagcgga agctctacgg gatagtttca      5640
     aacgttctca acagatagcg aacgaacttt ggaaacgttg gataagtgaa tatgttccga      5700
     ctttgaacca aagaacaaag tggtttggtg aaactagacc attgaaagtt ggcgacttag      5760
     tgtacattgt ggaaggcaat aacaggaaat gctgggttcg aggaatagta gaggagccca      5820
     ttgtttccag tgatggccgc attcgtcagg cttgggtgcg cacccgcaca aaacgatata      5880
     aaagggccgt atctagtctg gcagtactgg agattgaagc tggtaacgct gatccacagg      5940
     agaactccgg agcaggttac gggccgggga a                                     5971
//
ID   BEL-857_AA-I repbase;    DNA;    INV; 6050 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-857_;
KW   BEL-857_AA-I; BEL-857_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6050
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6050
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2973-2973 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6050 BP; 1742 A; 1338 C; 1542 G; 1421 T; 7 other;
     caactttaaa actttcgctg aacttggtgg gttgagtacc aacatgaatg aaatgtctcc        60
     gaaatcgccg aaagaaccac gagagggagg ctgcgtgaac tgctcgcgcc ccgactcgta       120
     cgacgatttc gttcaatgcg accagtgtga tggatggtgg catatgcgct gtgctggggt       180
     cacgaagtcg attgctgacc gtccgtggac ctgtagcaac tgcttaccat taagcgtagc       240
     aacatccacc tgtagctctg cccgtatagc ccttcggttg aagcaaattg aagaggaacg       300
     cgccatacaa cagcgggaat gggaggcgga aaaaagagct ttggagttgg agaggaaggc       360
     catggaggag aaatacaaat tactggagga gcaactcgcg gagaaagaga atgcttccaa       420
     gcgtagtcag gtgagtcggc ggtcaagcat gcgacgcgta agtgcttggg tcgaaaacct       480
     agtcgaaacc ctggatcctg agggtgccgt tggtggggtt gccgtagaag aattacacac       540
     cgggaagaga agagatctag aaggcggaga tgtcggccgc ctgctgacaa gggatggtca       600
     agctaacggt gtacatagtc cacgggagcg tgtacaccaa acatcgaatc aacaacattc       660
     atcwaggcag ctgacacagg ttgattcttc agctaatcag ccactatgtg acgagaatca       720
     gcgaagcaaa ggtgcaattt ccaaaacagt tacgagtaac cgagaaggga tcaccaatac       780
     gtatgtaaaa acgctcaacg gtaaagttat gcctttagca ccccctgtgc tatcagcagg       840
     taaggcacca attagtagta agctagaaag gaaagtgtcc gttcaaccga acgacgatcc       900
     gtataaagat ttgttagcaa aattagggtc aatcagtgta tctcccgtgg ttgagggttc       960
     acaacaacag tttgcaaccg accacgcttt gcaaggtcsa gcccacccta ccgtttatct      1020
     tccctcaatt ttgggcggta atgaagctaa attcagtcaa agtgstaacg ccgatcctca      1080
     tctcagtcac ataccaccaa atacgctccc tgtttctgtt gtgcctaacg aacctgagct      1140
     agagctcctt ccccctcgca attagccgcg cgacaagtaa tgccccgtga tttacccccg      1200
     tttgacggtg accccgcgga ctggccggtt ttcattagtg cgtttgagaa cacaaccgtc      1260
     gcgtgtgggt attcgaaagt ggaaaacctt gctagattac aacggtgctt gaaaggcgtt      1320
     gcttacgagt ccgtcaggag ccgtctactg ctaccagcat cagtgccaca agtgataaat      1380
     acgttgcgac ttctctatgg acgcccggaa ttgctgatca atgtactact ggacaaactg      1440
     cggtcaactc cggcacccaa agctgaaaaa ctcgaaacac ttatagagtt tgggatggcg      1500
     gtacaaactt tgtgtgacca tctcgaagcg gcaggccagc agtcccattt gacgaatccc      1560
     tatctgttga tggagctagt ggagaagcta cccgctcacg tgaaactaga atgggcagga      1620
     tatatgcaga gatatcctga ggttaatctc aagacatttg gtgacttcat gaacgggatt      1680
     gtaatttcgg cgagcagagt tacgctttac tctggtggat tgacggataa agcaagggta      1740
     aaaagcaaag gttctattaa cgcacatgtc agcgattacg agccgacaag gagtgacgaa      1800
     aggcgctgct tcctttgtaa atgctcagga catcttgtac gcgactgtga ccgtttcaag      1860
     gcactatccg tcgataatcg ctggaaaaca gcacagactt acgaactctg tcgtagctgc      1920
     ctcggtgcac atggaagaag gaactgtcgg atttccagtc cgtgtggagt aaatggttgc      1980
     acttttcgtc accaccctct tcttcactgc aatcgatctg accgaacgtc acatgggaca      2040
     gaggcacaaa gcgttcaatc aacgggaaac catacgcatc gtctgttgga tcaatcacta      2100
     ctgttacgaa tcataccggt aaagctgtat ggccctcaaa aggtcgtgga aacctttgca      2160
     ttccttgacg aagggtcaca cttgacactt gttgaagagg atttgaccaa agagcttggt      2220
     gtaaacggca caaaactgcc gttgtgcatt acttggacag ccaacgtctc caggatggaa      2280
     aaggattcgg aacaactaca gctggtgcta tcgggcgctg agaagggaaa gcgactgaaa      2340
     cttaacgatg ttcgttccgt gcgaaaactt gcgctaccag ggcaaacgct tcggatcaac      2400
     gacctcaaag aacaatttca acatctcagg ggattgccaa tctccggata tgagaatgct      2460
     gtcccacgac ttcttatagg agtgaacaat cttcacttga tcgttccttt gaaggtaaaa      2520
     gaaggtggta wgaacgaacc gatggccacg aagactcggc tgggatggtg tgtatatgga      2580
     ggaacgggca cttcactgat aaattcgata aacgttcatg tatgtgaatg caatcacgat      2640
     cgcagtttac atgaactggt gaagaactat tttgcgtcgg aagatgtagg aacgaaacct      2700
     gtgagcgaac tagtttcagc tgatgacaga agagcgatgg maatcatgca gcaaactacg      2760
     aagcgaatcg gtgacaggtt tgaaactgga ttattgtgga ggcatgacga tgttgaattc      2820
     ccaaacagct acgggctagc attacgtagg ctagaatgtt tggagagaag aatgcaaaag      2880
     aatccacatt tgaaggagaa tctgaaccgg caaatcgaag aataccaaga aaaagggtat      2940
     gcgcatcgaa tcagtaaaaa ggagctactc acggcggaca tgaggcgtgt ctggtacctg      3000
     cctttaggag ctgttgtaaa tccgaaaaaa cctgaaaagg tgcgtattat ttgggacgcg      3060
     gctgctacgg ttaatgggac gtcgctcaac tcgttgcttc taaaaggtcc ggatcaatta      3120
     gcttcgctat cagcagttct agtacgtttc cgacaatatg cagtggcggt cacagcagat      3180
     attaaggaaa tgtttcacca agtcaaaatt cgtgaggccg atcgacattc tcagcgtttt      3240
     ttgtggcgaa aagattcatc aagcgaaccg gaaatcttcg tcatggacgt ggctaccttc      3300
     gggtcaacgt gctccccggc atcagcacag tacgtgaaga acacgaatgc agtagagtac      3360
     gcccaagagt ttcccaaagc ggtaaaggaa atcgtccata accattacgt tgacgactac      3420
     ttgggaagtt ttgagacaga agtcgaagca gcagacgttg cggaacaagt aaagttggtt      3480
     cacagcaaag gaggttttca actacgcaac tggcagtcta acagtgctac agttttacaa      3540
     cgactgggag aaacgaagca gatcagcacc gaacacttat tcttggataa ggacaacgat      3600
     tttgagcgtg tactcggtat gctatggttg acgggggaag atgtactaag tttctgtacg      3660
     cagcataaag aagatgtgca aaaaatcatc gatagcgact cggctcctac taaaaggcaa      3720
     gttctgcgat gcataatgag ttatttcgat ccactgggtt tgttgagttt tctgctggtt      3780
     catggtaaga tcttgctaca agatatctgg cgcgcgggaa ttcaatggga tcaaacaatc      3840
     aatgatgatc agtgggaaca gtggcaaaaa tggaataagg ttttacggca aattccgacc      3900
     attcgtattc cgagatgcta ttttgataaa gctgtagcac aacattacaa acatctacag      3960
     ttgcatattt ttgtggatgc tagcgagggt gcttatgcgg cagcggcgta tttccgtatt      4020
     atagatccag caggaacagc ccattgttct ctagtggcgg cgaaaaccaa ggtagcgcct      4080
     ctgaaaccgt tgtccatacc acgtctcgag ctacaggcag cggtacttgg aactcgttta      4140
     ctgaattttg ttttgcaatc ccacacggtt acaataaaaa aacgctatct gtggtcggat      4200
     tcctcaacag tactggcgtg gctaaaagct gatccccgca aatacaaaca atacgtggct      4260
     tgtaggatcg gtgaaattct gaccgaaacg gaagcgaacg agtggcagtg gataccgtct      4320
     aaactgaatc cagcggactt ggctaccaaa tgggggaatg gtccatctgc agacgctaga      4380
     agtatatggt ttacagggcc cacgtttcta caacgacctg aaaatgagtg gcctaagcaa      4440
     acaagacttc agcatacgat agacgaagag ctacgcgtgt gtaatctaca ctacgaacca      4500
     gggatgtcgt cttcagttat tgattttcat cgattctcga aatgggaaag attgcatagg      4560
     gctgcagcat atgttcacag atttattgga aatttgaaaa gaaagtgtta tggcgaatcg      4620
     cagaccactg gacatctcac cacagatgaa ctaaagctgk cagaaacaac actcattagg      4680
     ttggcacaat gtcaagaata tccagaagaa atggccgtgc tatctaagaa tcttgatcga      4740
     ccacatttcg agcaaaaaag cttgggccaa cacagtcctt cgtatcggac cactccgtat      4800
     atcgatgaag ctggaattct acgaattgat gggagaatag gtgcaaccga atatgcgact      4860
     tccgatatga agtgtccggc aattttaccg aagaaccata gagtgaccgt tcttcttatc      4920
     gacgccttcc ataggaagtt tagacacgcc aactcggaaa ccgtggtaaa cgaagtccgg      4980
     caactatatt atgtgcctcg gctgcggaca atagtcaaaa aaatcacgat gggatgtatc      5040
     gtttgcaagc tgcgcagagc ggttccgatt attccacgaa tggctcctct tcctcctgct      5100
     cgcttagcag cattctccag accctttacc tatgtgggcc tggactattt cggtacacta      5160
     gtggtgaagg taggacgcgg aaacgcaaaa cgatggattg cacttttcac ctgcctaacc      5220
     atccgagctg tctactgtga aatagtgtac aacctttcca cggaagcctg cataaaagcc      5280
     attcgtcggt tcgtatgtcg acgtggcgct ccagtggaaa tccattcgga caacgctacc      5340
     aatttccacg gcaccgaccg agtgctgatg aaacagattc aacaaggtgt tgcagcaact      5400
     gttaccagta caactaccaa gtggatcttc atcccgcctt cgtcgcctca catgggtggg      5460
     gcatgggaac gcatggtgcg ttcagttaag caagcgatgc tgggggccta taatattgat      5520
     cggaagttgg atgacgaatc tctgctgacg ttcgtgactg aggctgaaag tattgttaat      5580
     agtcggccac tcacttatct tccattagat gcagatgaat ccgaagcact atctccagac      5640
     cacttccttt tagggagctc aagcggagtt cgacaacctg ctgtgaaccc aactgataac      5700
     tcagcagcaa ttagaagctc ttggcatatg ataaaccaac aactcgacag cttctggaaa      5760
     cgttggatac gtgaaatgtt gcccattcta accagaagaa ccaagtggtt tggcgatgtg      5820
     aaaatgatag cagttggaga cttggtgcta atcatagacg acggaaaaag gaacaactgg      5880
     gtccggggac gagtagtaga agttataagt ggagaagacg gtcgtattcg acaggccata      5940
     gtgagaacat caggkggctt gctgcgcaga gctgttgcta agctagcagt tttagatatt      6000
     ttggacaatg gtaaaactgg gaccggtggc cagttatacg ggggggagga                 6050
//
ID   BEL-857_AA-LTR repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 25.10, Created)
DT   11-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-857_AA-I;
KW   BEL-857_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-578
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-578
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2990-2990 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 578 BP; 185 A; 102 C; 112 G; 179 T; 0 other;
     tgttgccact gggcacactg ctccaacgtc cgaagtcagt catgtcgtga cagctgaact        60
     atgtcatcga tatgacagct cttaaagcta ttgaagaaca atagatggtt atgaggcaaa       120
     tattgtgtgc attggataac taaaatcaaa ttgaatttac tactgtattt atcgaattta       180
     ttatcctagt tgaagtaagt tattgaatta ttgaaaccta taacgggatt gtaaatctat       240
     ttgaaatttg tagttattct agagaaaata cgcatacgtc agaccgagac attgcgctac       300
     ggaagattcg cattgtctag caagtaagaa tcaattagtt acttaactca caaatatcta       360
     atacccattc gattgtagct gataggtcgt ttcaagtagt ttgttgttcg gggaaaggta       420
     aaatacgctc tttaatcaca ccgaaagtgt aagtagtcga attcgatggt aatttgttaa       480
     tcgcaactaa ataaatgatt ttttgcagtt taaagctgcg ctaaaagcaa ttctgtgctg       540
     ctcaaaaccc ggtgacgata ccctttccgc ccgcaaca                               578
//
ID   BEL-858_AA-I repbase;    DNA;    INV; 6178 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-858_;
KW   BEL-858_AA-I; BEL-858_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6178
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6178
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           736..4953
FT                 /product="BEL-858_AA-I_1p"
FT                 /translation="MALRERSKLMSVTVDAIRTIETFVDEYDAETDRKKIE
FT                 SRLMRLDQLYDRYVNVSIEVEMLMEEKADPKDTFAKNRSEMEELYYRLHDF
FT                 LTLNKPNILSTAHSPHVSSSVVRLPKIDLPTFDGEIDNWIPFYDAYRSLIH
FT                 NNKDLAAVDKFHYLMAALKDPVKRLLDTTSITGANYKIAWDLLVSRYDNTR
FT                 LLIKNHISSLFTVEPVRKESSSAVLALVDHFERHVKILTTLGEPTAEWSSL
FT                 LVHMVCSRLNQSMLREWERSTSDDTTKIPTYDELITFLKGQARILLSLNSG
FT                 SVTPSLVQEKPHFSVAHTAAVSKTYTPKATSCIVCNQSHRIYDCEVFKRMQ
FT                 LEQKQDTVRKKKLCWNCLSPSHLSRECSSKPCRRCNEKHHTLLHPPSPNDR
FT                 STQSQANPPIQSQQSTSSIDDESVIPALLSLPAPLASTTTTSATQQPHTSN
FT                 ALAAANSSKTSYSTVLLSTAVVKVHGPSGRSTFVRTLLDSCSEANFITERI
FT                 VQLLGLNRQKQAAVIAGMGGSTVNSNQCTVATFSSVESTYSNTLTFSILTK
FT                 ITNDLPGRKIDVSNWNIPSTVVLADPDFAKPQRIDMVIGAQLFFSLLREGQ
FT                 LPVVAGSPTSQPILQRTVLGWVVSGPVSTNDQSRGFERVALLCTTDDLDKQ
FT                 LSRFWEVESCPKSSGLSKEEIACEKYFSASTTRDESGRFVVRLPKKEGILS
FT                 QLGDSSTGALRRFHWMQRRLAKNPELNAQYVDFMAEYIDLGHMVPVDPSQD
FT                 TTHLRSFYLPHHAVIKPSSTTTKCRVVFDGSSKSSTGISLNDCLMVGPTVQ
FT                 DTLYSIVLRFRLNEIAVVADITKMYRQIWVHPDDRHLQRIFWKGETDFEVQ
FT                 PFELITVTYGTASAPYLATRCLQQLSYDHSEREDDIPAKIGKDFYVDDFLS
FT                 GSDSVDDAVQLCSGVQHILGSAGFELRKWSSNSPEVLAHIPDNLKDKRSIV
FT                 AVDDIQGSVSTLGLLWHPESDSFRFKVPEFSIDLPINKRIVVSEMSKLFDP
FT                 LGILGPVIIKANIFVQQLWKAKLDWDDPLPRTLSADWEDYRLGLAALNSLS
FT                 VPRLVKALGAGASMQLHGFCDASQHAYGACIYIRSVGNNGVIATRLLTAKS
FT                 RVAPLQTLSIPRLELCSAVLLSKLFQAVAASLNITINAYFWSDSSISLHWL
FT                 HNSPANFNTFVANRVAEVQRLTEGGTWNHVAGLENPADLISRGTDACELNN
FT                 AALWWKGPPWLASDASEWPSMFPVPSSKEFHLEVLEMRPTTLAAITRSVED
FT                 PDHALFNRFSSLTRLIRIAAYCRRFVRHCQAKITGTDLQVTLFLTPASTNR
FT                 PCEGRTRGLLQPRNRYDPDWKASGSQEITSQNLESIHPGWSIPCRWPAEPL
FT                 IVLVHPQASNSSARKAPLDVTAHRIGAQATSPRWPSCDDRTYP"
FT   CDS           4556..6100
FT                 /product="BEL-858_AA-I_2p"
FT                 /translation="RDSFVSLLIAAVSYGTVRPRLLEQTCKSHCFSLQQAL
FT                 IGLVKVVQEDCFSHEIDTIRTGRQADLKKSPLKTLNPFIQDGLFRVGGRLN
FT                 HSSYSFTRKHPILLPEKHPLTSLLIESVHKQLLHAGPRAMIAHIREQFWPL
FT                 HLRNLARRHVNSCLRCYRVRPQSEYQLMGQLPKVRVTPARAFLNTGVDYCG
FT                 PVWLKVPVRRTKPVPPIRAYVAVFICMATKAVHLELVSDLSTDAFIAALKR
FT                 FVARRGKPATLYCDNATNFKGADRELRDLCKQLNNQQHQQKVASFCAESAI
FT                 QFKFIPANAPTFGGLWEAAVKSMKHHFRRVVGLEALSSEAMITVLCEIESC
FT                 LNSRPLTAISEDPSDLDILTPGHFLVGSALQSIPEPDLSEIPSNRLSLWQA
FT                 MQRRAQTFWKVWSTDYLHQLQQRTKHFFRQPNVLVGKLVLLKDDDLPPLKW
FT                 SVGRIASVHPGADGLVHVVKVRLASGAVFDRPIVKVCLLPINDDAHSASTS
FT                 GEVPSFQSNSAASAANLSS"
XX
SQ   Sequence 6178 BP; 1460 A; 1678 C; 1503 G; 1537 T; 0 other;
     tctttgtggt ccttcgaacc ggataatcgt tccgatcgaa gtggaatcaa gtgcgccatc        60
     gtagtgcaaa ttaattgccg tcgcgtgtga ctccaccatt gctctcgttg tggtgcgcat       120
     ttgattgccc tctgtgtaat taatcgatca ccaaaaattt gatcggtgct gagtttgaac       180
     tgttgctgtg gttttggtcg gacgagaagt tgggcttccc gtcgcttgtc cgtgtgtgat       240
     tgggctagaa gaagatcgcc gcgtgtgtgg caaagtgaaa ttggactacg aactttggac       300
     tgtgactgca aaagtgaaca atagaagcag aaagaaagcg cagtgaattg gcgctggtgc       360
     acagtggttg aaagtgcaga atcaacacta gtgttttgga atcgttttac gggtttgtcg       420
     acaaaacctg cacccctttt cctgccgttt ttttcgggtt tgtcgttaaa acccgatcca       480
     atcgtttcct ggtttgggcg tcagaaccag agccagctcg tttccaggtt tgggcgtcag       540
     aacctgtgcc atcgtgagta gggcttgcga gcattgggtc ggcgtggctg cggtgagtac       600
     gcattattag agtaggcaac ttttttggat ttttggtgtg gtggagtgga ttggcatcgc       660
     ctttttttgg attttgcttg atttgtggtg gttttggtgg tccttgcttg ctgcgtggcg       720
     ttctgaggaa gaaaaatggc gcttcgcgag cgctctaaat tgatgagcgt gacggtggac       780
     gcgataagga ccatcgaaac atttgtcgat gagtacgatg ccgagacaga taggaagaaa       840
     attgagtcaa ggttgatgag gttggatcag ctgtacgacc gatacgtaaa tgtatcaatc       900
     gaagtggaaa tgttaatgga agagaaagct gatcccaaag acacattcgc taaaaaccgc       960
     agtgagatgg aggagctcta ttacagactg catgattttc tcacgttgaa taaacccaac      1020
     attttgtcca ccgctcactc cccccacgtg tcctcgtccg ttgtccgact accgaagatc      1080
     gacctgccca cttttgatgg tgagatcgat aattggattc ccttttacga cgcttatcgc      1140
     agcttgatcc acaataataa ggatttagct gctgtggaca agttccatta cttgatggca      1200
     gctctcaagg atccagtcaa gcgactactg gataccacga gcatcacggg agcgaattac      1260
     aaaattgcgt gggatctttt ggtcagtcgg tacgacaata cgcgcctcct catcaaaaac      1320
     cacatttcgt ctctatttac tgttgagccg gtcaggaagg agtcttcttc tgctgttttg      1380
     gcacttgttg accactttga acgccacgtg aagattttaa cgacgttggg ggagccgacc      1440
     gctgaatgga gctctctttt ggtgcatatg gtgtgcagtc gtttaaatca aagcatgttg      1500
     cgagaatggg agagatcaac aagtgacgat acgacgaaga ttcctaccta cgatgaactt      1560
     atcacgtttt tgaagggtca agcccggatc ctgctttcgc tgaatagtgg aagcgttaca      1620
     ccttctcttg tgcaagaaaa acctcatttc tctgtagctc acaccgcagc cgtttcgaaa      1680
     acgtatactc ctaaagccac cagttgcatt gtgtgcaacc aatctcaccg catctacgat      1740
     tgcgaagttt tcaagcggat gcaactcgag cagaagcaag acaccgtccg aaagaagaag      1800
     ctgtgctgga attgtctgtc gccgagtcac cttagtcgtg aatgctcctc caaaccctgt      1860
     cggagatgca atgaaaagca tcatacgttg ttgcatccgc cctcccccaa cgatcgttcc      1920
     acccaatccc aagcaaatcc acctattcag agtcagcaat ccacctcaag tatcgacgac      1980
     gagtccgtaa tcccagcatt actttcactc cccgctccac ttgcctcaac caccaccacg      2040
     tccgccaccc agcaacccca cacttccaat gcgttggctg cagccaactc gtccaagacc      2100
     agctactcaa ctgtcttgtt gtccaccgcc gtggttaaag tccatggccc ttccggaaga      2160
     tccacattcg ttcgaaccct gttggactcc tgctcggagg cgaatttcat caccgagaga      2220
     atcgttcagt tgttgggact gaaccgacaa aagcaagcgg cagtcatcgc tggaatgggt      2280
     ggatccacag tcaacagcaa tcagtgtacc gtggccactt tcagttccgt ggaatccacc      2340
     tattcgaaca cacttacgtt cagcattctc accaaaatca ctaatgattt gccggggagg      2400
     aagattgatg tttccaattg gaacattcct tctactgtgg tcttagccga tccagatttt      2460
     gccaagccgc aaaggatcga tatggttatc ggtgctcagc ttttcttcag tcttctgcgg      2520
     gaaggtcagc taccagtcgt ggccggttct ccaacaagtc agccaattct ccagcgtacc      2580
     gtgctcggct gggtagttag cggccctgta agcaccaatg atcaatctcg aggctttgaa      2640
     agagtcgctc tgctgtgcac cactgatgat ctcgacaaac agttgtctcg tttctgggaa      2700
     gtcgagagtt gtcccaaaag tagtggtctt tccaaagagg aaatagcctg cgagaagtat      2760
     ttctcagcat ctaccacccg tgatgaatca ggtcggttcg ttgtgcgctt accgaagaag      2820
     gaaggaatcc tgagtcaact tggcgactcc agcactggcg ctctccgtcg attccactgg      2880
     atgcagcgtc ggctggccaa gaatccagag ctgaacgctc aatacgttga cttcatggct      2940
     gagtacatcg atcttggcca catggttccc gtagatccgt cacaagacac cacccatctc      3000
     cgctcattct atctcccaca tcacgctgtg attaagccaa gtagcaccac caccaagtgc      3060
     agagtggtct tcgatgggtc cagcaagtct tctacgggta tctcgctcaa tgattgtctc      3120
     atggtcggac ctaccgtgca ggatactttg tattccatcg tgctgcggtt tcgtctgaac      3180
     gagatagctg tcgtggcaga tatcaccaaa atgtaccgcc agatctgggt acaccctgat      3240
     gatcgccatc ttcaacgcat tttctggaaa ggcgaaactg atttcgaggt tcaacccttc      3300
     gagctcatca cggtaaccta cggcacagct agtgcgccat atttagcaac acgctgctta      3360
     cagcaactgt cctacgacca ctcggaacgt gaagacgaca ttccagcgaa gatcggcaag      3420
     gacttctacg tggacgactt cctcagcggt tccgattcag tagacgatgc tgtacagttg      3480
     tgctccggcg tgcaacatat tttggggtcc gcagggttcg aacttcgaaa atggtcatcg      3540
     aactcacctg aagtgctggc gcatattccg gacaacctga aggataaacg ttcgattgtg      3600
     gcagtcgacg acatccaagg atctgtgagc acactaggtc ttctgtggca tcctgaatcg      3660
     gattctttcc ggtttaaagt tccggagttt tccatcgatc tccccatcaa caagcgaatc      3720
     gtggtatcag agatgtccaa actattcgat cctttgggca tactcgggcc agtaatcatc      3780
     aaggcgaata tcttcgtcca acaactctgg aaggcaaaat tagactggga tgacccgctt      3840
     cccagaacct taagcgccga ttgggaagac taccggcttg gattagcagc tctcaattca      3900
     ctatccgtcc ctcgcctagt gaaggcgctc ggcgcaggcg caagcatgca actgcatgga      3960
     ttttgcgatg cgtcccagca cgcttatgga gcgtgcatct acatcagaag cgtcggcaat      4020
     aatggtgtca tcgcaacccg tctccttacc gccaaatcac gagtagctcc tctccaaacc      4080
     ctctcaatcc ctcgcctaga gctttgttct gctgtcctgt taagcaaact cttccaagcc      4140
     gtcgcagcga gcctcaacat caccattaac gcatatttct ggtctgattc ctccatctct      4200
     ctccactggt tgcacaactc acctgcgaac ttcaacacat tcgtggccaa tcgggtcgcg      4260
     gaggttcaac gtttgacgga aggaggaact tggaatcacg tcgccggttt ggagaacccg      4320
     gcggatctca tctcgcgagg tactgatgct tgcgagctaa acaatgccgc cctgtggtgg      4380
     aagggcccac cttggttagc atccgacgcg tcggaatggc cgagcatgtt cccagttcca      4440
     agttccaagg aatttcatct tgaggtcctc gaaatgcgac ctactacact tgcagcaatc      4500
     acacgttcag ttgaggaccc cgatcacgct ctgttcaacc gcttctcgtc gctgacgaga      4560
     ctcattcgta tcgctgctta ttgccgccgt ttcgtacggc actgtcaggc caagattact      4620
     ggaacagacc tgcaagtcac actgtttctc actccagcaa gcactaatcg gccttgtgaa      4680
     ggtcgtacaa gaggactgct tcagccacga aatcgatacg atccggactg gaaggcaagc      4740
     ggatctcaag aaatcacctc tcaaaacctt gaatccattc atccaggatg gtctattccg      4800
     tgtcggtggc cggctgaacc actcatcgta ctcgttcacc cgcaagcatc caattcttct      4860
     gccagaaaag caccccttga cgtcactgct catcgaatcg gtgcacaagc aacttctcca      4920
     cgctggccct cgtgcgatga tcgcacatat ccgtgagcaa ttttggcctc tgcatctccg      4980
     taacctggca cggcggcatg tcaactcctg cttacgctgc tatcgtgtcc gaccccagtc      5040
     ggaataccag ttaatgggtc aacttccgaa ggttcgagtc actccggctc gtgcgttcct      5100
     caacaccggc gtcgattact gcggacctgt ctggttgaaa gtcccagtac gccgaacaaa      5160
     accagttcca ccgatcagag catacgtcgc tgtcttcatc tgcatggcta cgaaggccgt      5220
     acatctcgag ctggtcagcg atctcagcac cgacgccttc atcgccgcgt taaaacgatt      5280
     cgtggcacgt cgtggcaagc cagccaccct gtactgcgac aacgccacta acttcaaggg      5340
     cgcggacagg gagctgcgcg atctttgcaa gcaactcaac aaccaacagc atcagcagaa      5400
     ggttgcgtcg ttctgtgctg agtccgccat tcagttcaag ttcattcccg ctaacgcacc      5460
     aacgttcggt ggcctctggg aggccgctgt caaatccatg aagcaccact tccgaagagt      5520
     cgtcggcctg gaagccctgt caagcgaagc aatgattacc gtcttgtgcg aaatcgaaag      5580
     ctgcctcaat tcgcggccgt tgaccgccat ctccgaggat ccaagcgacc tggacatcct      5640
     cactccgggg cacttcctgg ttgggtctgc tctgcaatcg attccggagc ctgacctctc      5700
     cgaaattccc agcaaccggc tttcgctttg gcaggcgatg caacgaaggg cccagacgtt      5760
     ttggaaggtc tggtcgacag actacctcca ccaactgcaa caacgaacga aacacttctt      5820
     ccggcagccg aatgttctgg tcggcaagct ggtactcctg aaggacgacg atctgccgcc      5880
     gctcaagtgg agcgtaggtc gtatcgcatc ggtacacccc ggcgcggatg gactggtcca      5940
     cgtagtgaag gtcagacttg catctggcgc agtcttcgac cggcctatcg tgaaggtctg      6000
     tctgcttccc atcaacgatg acgctcattc cgcttccact tctggcgaag tgcctagctt      6060
     ccagagcaac agcgcagcat ccgctgccaa ccttagctct taagaccatt gaatttgtta      6120
     gatttaagta cacagtgtat tcttgaattt ttaatgaaat gcttcatggt ggccggta        6178
//
ID   BEL-858_AA-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-858_AA-I;
KW   BEL-858_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-408
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2991-2991 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 408 BP; 109 A; 111 C; 78 G; 110 T; 0 other;
     tgttgcgtcc accgcaatag agtattacat acgtatattg aatgcgcgac aaatccataa        60
     cacaatttgt aatgcactct acacttcacc cgaataaaat ctcacactca tcatatgctc       120
     tcgatcgctc tgataagagc attttgcagc acccatcgat cgttcaattg tacaccaatc       180
     ggtaaatgta ggttcccgaa ctaaatcaat tagttattat cgcactttct ccccgtccag       240
     tcgaatacac cgttgtagtg aagtgacgaa gtgaagtcta gttttttccc gaccgaaatc       300
     cccacagtgc agtgattctc cccccgtgaa ccagtgacct atcccggatt gttccgctcc       360
     gccgttgtag gcaaaggacc tgtcgaagag ggttcccttg cgtggaca                    408
//
ID   BEL-859_AA-I repbase;    DNA;    INV; 6413 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-859_;
KW   BEL-859_AA-I; BEL-859_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6413
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6413
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2974-2974 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6413 BP; 2135 A; 1528 C; 1521 G; 1229 T; 0 other;
     ttggtgaccc cgacgtgata aacaacgttg cctatcacgg aaaatcaaga agaaattcga        60
     ccaaaaaaat gaatacaatc ccccaagagg tagtgtagtg caaacccgca gagaaaatac       120
     tagaagaaca actcgcttaa cagtgaaaat agtcccccaa gaggtgacgt agtgcaggcc       180
     ccagtgaaga aaaattgaat cagcaattct cttgggagtg aaaataatcc ccccagtggt       240
     taagtagtgc aggtccaagt gcccaaattg gaaaaaataa ccgaacagtg aaactaagcc       300
     cccagaggca agtgtagtga aagacgcacc cctgtgggta aaaaagtgac caaagaacga       360
     aaaggtgcgc accgcccccg agtaggtgaa aactatctga ccgaaaagtg cgtgccaccc       420
     ttgagtgaaa actaagtgga aggaaaggtt tgcgcagccc ccgaatgggt gaaaactgaa       480
     tgaacaaaag tgtgcgccgc cgctgagcgg gtgaaaacta agtggaagga aaggttcgcg       540
     cagcccccga gtgggtgaaa actaatttaa taaaaagtgc gcaccgcctc tgagcgggtg       600
     aaaactaagt ggaagaaaaa actttacttg caagtgtttg acgcgaacta ccgaaaactc       660
     cgatttgttt accttgttag ttacatcgga ttataaagtt ttgcaaaaat tgaacgtgga       720
     agtgcgtgaa agcccacaga ggccacagca gcggttacca aacccacagc agccaacagc       780
     agcggccccg cgcgtaacca aacccacagc gatcacagca gcaaatccgc agcggtaact       840
     aaatcccgca gcggcccagc ggtatcaacc cggaaaacat aaataaatcc aagtaagtcc       900
     gttctaattt atttatattg acaaaatgcc cgtggaagac gacaacgact tggccgtgac       960
     gctgactagg cagcttacgg ctatcgaagg atcgctaaag gacctggaaa ccttcaccgc      1020
     aggagtagat gctcgaaatc taccgtcgtc ctcagagctg gaagcgcgcg accaacttct      1080
     taacgagata tggcagcaag cctcggcagt gcttctcaag ctggaaggca tcacgggcac      1140
     ctcgcaacga agggccccaa tgatgcagat attcatcaaa gttaagacgg aattcgtccg      1200
     tctgaagaaa ttggcggaca aacaagaaag caggagaagc ggaagcgaac cagcggccgg      1260
     cgccagtgct atagaccaat cgatgatagc agcaggcgcc actaagtcag ccaatctacc      1320
     tagaattgag ctgccaaaat tctcaggatc gccgacggaa tggctatcct tcaaagggcg      1380
     ttttgaaaag cggatagcaa ccataaccga ggacgcagaa aaatacgtgt tcctgcaaaa      1440
     gggactggaa ggattcgaac ccgcctacaa tgcctgcaag gcatttgaag actccgagct      1500
     gagtttcgac gacgcctgga taaaattgga agaacgcttc tacaagaagc gcatagcatt      1560
     cgagggacat tttcagaagg ttttaaaaat caagcgcccg cagaagcaaa atgcaaaagc      1620
     actccttaac attgtggatg cggtggatac aatgatgacg tcaacccggc aaatcgccgg      1680
     tgaagcacca gctagtatga aatgcatagc taatgggctc ctgatctgcc tggtcaaaga      1740
     gcgaatcgac gaacaaacac tagcaaagct ggaggacaag ctagatctcc agaccatata      1800
     caattgggac gaattcaaga aggaactaga gcggattgca aaccagctct gttgcaacgt      1860
     atccactgaa cacccaaaac atccctacaa caaagttgta gcattggcgg ccaacccggc      1920
     ccacaagaag cccgctcatg cagaaataaa gtgctcaatg tgtggaaagg ccgggcactt      1980
     tatctacaga tgtgacacct tcctaaacca atctgttcca gccagattgg aaatggtaaa      2040
     gcaatcacag cattgcttta actgcctaca aaagggccac ggaatcaaga tgtgcaaaaa      2100
     cacgggaaga tgcaaggaat gcaagggacg ccatcacact cttctgcacg agacccgcgg      2160
     agaaaagcca actcccaccc cacctagcaa caagccaacg aaagaaccag aagcaggacc      2220
     tagtcaaacc aagtgactag agtcggagcg caattttgtt tttcttgcta ccgcaatcat      2280
     ctgggtaggc ggtagcgaag ggaagtggca cgagatgaga tgtattctcg actccggcag      2340
     ccaagcagaa accatcactg aagaagcggc aattcaactg caattgcctc aatacaaaaa      2400
     caaaatgcgc ctcactggaa taggtggttc gctagacgta gacaggaaga ttttcgctcg      2460
     cataagctcc caacgcgaaa atatgtacat ggatattgag ctttcaatag ttaggaagat      2520
     agtagaccac caaccaatct acacaatccc ttggagtgat ttggacatac cagcagacat      2580
     acccttagca gatccaaatt tcaatctcag cagccaagta gatatactcc tcggagcaag      2640
     agtattttac caaatactta aaacgaatcc aattgcggca aggaagagga cccaccttcc      2700
     aagaatcttc attcggctgg cttgcagtag gcgtcctaaa tgattcatgt agaagcttgg      2760
     cgctaacctg cgctaaaatt gaagaagccc caaaggaaga agtaaccaac catgaactac      2820
     atgaattgtt caagcagttt tggaaaatcg aagaactcgg aagagaaaca gaggctccag      2880
     aaagcctcaa caaagaagcg gaagaaaact ttatcaaaaa caccactaaa gatgcagatg      2940
     gcagatacat agtacgaatg ccgctcagga gtgatcacca gcacctggga cagtccttcg      3000
     aacaagctag aaagaggttt ttagctctgg agcggcgatt agcttttaac caacaaaaat      3060
     acgccgaata tcgcaagttt atggaggaat acattcagat gggtcacatg gagcccatct      3120
     ccgaggaaga cttacacaat gtgcgatatt tcattccgca cagctgcgtg gagaagccag      3180
     attccacgtc aacgaagcta agagtggtat ttgacgcgag tgcgaaaacc accagtggag      3240
     tatctctcaa cgacattcaa ctcgtaggcc ccaatgttca gagagatctg aacgatgtgc      3300
     tgatcgactt tcgtgggcac aacgtagtgc tgatggccga tgtggcaaaa atgtaccgcc      3360
     aggtgaaagt agcagatccc gatacctggt tccagtgcat tctcttcagg aaagatcaaa      3420
     gtcaaccaat ccgcgcatat cggttgacca cagtcaccta tggtgaagca tcatcgtctt      3480
     tcctagcctg ccgagcattg aagcaagtag cagtggaaga aaaagaaacc tgtcctcatg      3540
     tggctgaagc tatcgagaat tgtttttacg tcgataacct gatgctcgga gcagcaaaca      3600
     tcaatgattt gaagaagttg aaggaaggag ttacatcagc actgaagaag agatgcttcc      3660
     ctctcaggaa gtgggcatca aacgacccac aagttacaga agacatcaac aaagaagaca      3720
     tggaggaagc agtaataatc ggcggccaag aaatcatcaa aacactcgga attgcctgga      3780
     atccagtcca ggacgtattc aacttcgcaa tggtcaatac ggaaggaccc tcgaaggaaa      3840
     tcaccaagcg acagttagca tccaagattc tcaaactatt cgatcctctc ggcttcatac      3900
     agccggtgat catcaaggca aagctcctgc tgcaggaagt gtggaagaca aatttggaat      3960
     gggacaaacc tgtttccgag gaaattctac ttaactggaa caaatttcaa gcgcaattgg      4020
     aaggcttgag gaacttcacg ttaccaaggc aagcgttccc aagtgaatgc gactcattag      4080
     agttgcatgg gttttccgac gcatcaggaa aagcctacgg ctgcgccatt tacatggtgg      4140
     ccaaaactca aggccagcaa accatgtcac gactactatg cgccaaatca agagtggcgc      4200
     cgaagagcat gactcaaaaa agtcaggaag ccgaatcatc agtagaatcc cccacagagg      4260
     atgaagaaga agaatcatcg gagaagaaca aggctacaat tccaaaactg gaactgcaag      4320
     ccgcattgct actagcggaa gtctgcgagc ggattcgaaa gatagtcaaa aaacggatca      4380
     ccgcagagca ttattggtgc gattcccaaa tcgcactaac atggatcaag actccaacta      4440
     gcagatggga ggttttcatt cgaaaccgaa cccgaaaaat ccaacgatta acggccgcag      4500
     aaaattggca ctacgtcaat acaacagata atcccgcaga cctagtctca cgcggaacca      4560
     ccgtgaagac tctgatggga agcaaaagga aaatttggtt aaacggacca gattttctca      4620
     cgacggaaac ctacccagac ctcccaatcg aggaaacgga agcagcagtg gaaggagaag      4680
     tgagaaaagt ttgcatggct gcagcgagag ccacacctac cgaggactac atcgagcaat      4740
     acagatgcca caactcattc agaaggacgc gcagacactt tgcgctcatc gccagagcca      4800
     tcaacaattt catggctaaa tcaccaagta ttagagccag aggtcgttac acggaaccaa      4860
     aagtaggacc tcttactaca aacgatctgg aagaaggact gaaccttgca atccgagtga      4920
     tgcaactagt taagttcccc gaagaggctc aggccatgcg agagaagaga gaaataatcc      4980
     cgcaaggaag atttcaacat gtgaagccta aactaattaa cgggcttata cacataacag      5040
     gaagactcaa tctagcagat ctgtctagct cgcaaaagat gccaattctc atcccgagcg      5100
     atcatccatt taccaaggtg atagtagaac atatccaccg agtaacattt cacgctggaa      5160
     ctgaattagt actagtggag ttcagaagga agtattggat gcgaaacttg agaaaaatcg      5220
     tattgggcgt actcaacagg tgcatgctat gcgctcgaaa ccgtccgaaa caactaaccc      5280
     aacaaatggg tcaattaccg catccgcgag tgaatccatc acctgcattc actcacacag      5340
     gagtagatct atgcgggcca ttcacagtga ccgcaggaaa caaatcacgc acaaaaagca      5400
     tggtccacgt gtgcattttc gtgtgcctcg caacgaaggc aatacacctg gaggtagtag      5460
     aaaatcagtc agccggcgcg ttcatatccg ccctgattag gttcacatct ataagaggaa      5520
     gaccggaaat aatttattcc gataacgggc gtaacttcgt tggtgcaagc agggaactcg      5580
     cccatctaag gagaatttac aacaaggagt tatttcaaca taatatcatc gccttagcag      5640
     cagataaagg catcaacttc tcctttattc caccgagaag ccctaacttt ggcggacttt      5700
     gggaagcaaa cattaaaact gcgaagcgat tattcaaggg cgccggacga ggcgctcagt      5760
     ttacacttac ggaattgcag acgctatttc atcaaattgc ggccaccatg aactcgaggc      5820
     cattgacagc acctctcaca agtgtagaag cgctggaacc tctaactcca gcacattttt      5880
     tgataggaag accaatctac tcaatgccag taccggcaga agaagcagaa tccgtcggct      5940
     tacatgtacg atggaaacgc atataccatc aagcccaaca attttggagg cgatggcgag      6000
     aagagtacct acaacaattg aggaactacg caaaatggaa tagccagcaa cgtaacctag      6060
     aagtaggaga aatagttctt atcggggacg atcacgttcc aatggcaaac tggcccatgg      6120
     gagtagttac agaagtattc aaaggaccag atgacgtcgt tagagtagcc acgatacgaa      6180
     cggcaacggg catctacaag cggaatgtaa gggtactagc tcccctaccc atcgcagctg      6240
     agaagcaatc agaagaagca gccgacaacg tagagacggt ggaagaatgc acaccacgtg      6300
     cagataacaa cgcagcagta caacctgccg aagaagaatt ggaagaagac caacccccgg      6360
     aagcatcaaa taatatttgg gacggacggc tacgtcccaa gggggggaga aaa             6413
//
ID   BEL-859_AA-LTR repbase;    DNA;    INV; 706 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-859_AA-I;
KW   BEL-859_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-706
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-706
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2992-2992 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 706 BP; 223 A; 179 C; 169 G; 135 T; 0 other;
     tggagtcggt tgagtgaacc ctaaccctca actgcaacaa tgttgcacac tcccagcaac        60
     aagaattgct atcatgcaag ttccaatgaa aaacacccag actatgggaa ctgccgacat       120
     ttcaaaacgg caaaagtcca cgaggttcac cacaacaaga acctcgtggc accaagattg       180
     acgagtcagc actaaatgtg ctacttgcga tgcagcgaag aggactcgga ggtccgataa       240
     aaccgtagct ccaagagtta tgccacccag tgtcaacgaa taagctgcaa caatgtggcc       300
     gtttggaaac gaagaaacca tcgaaaacag cattaccgca cacgatgtgg tatcatattc       360
     gatggacgga gcatttatcg ccgtcctggt ggcggccgtc attatctgga agtggcggca       420
     caacgcgcga cgaatcaagt cgctagaaac cgaaacccgg aggaggaacc tgggtgtttg       480
     agcggcgggg gtcatccgat cccccatcac gacggagcac tggtgcaccc ggcaccacga       540
     agataaacac gaagctaaac acaaatacaa actctgtgaa tagaaaaagt ataatatagt       600
     tagttgagtt taaagattca aacggagcag tcattctgat gacagctctc ccagcctaac       660
     tcgattcgga agtttgagcc tgcccttaag gcagtgccac taaaca                      706
//
ID   BEL-85_AA-I repbase;    DNA;    INV; 5928 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-85_AA_;
KW   BEL-85_AA-LTR; BEL-85_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5928
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   'AGAGG' target site duplication
CC   LTRs are 99% similar to each other.
CC   An internal insertion of Gypsy LTR was removed.
CC   Therefore, the sequence is labeled as "consensus".
XX
FH   Key           Location/Qualifiers
FT   CDS           40..4431
FT                 /product="BEL-85_AA-I_1p"
FT                 /translation="MPETDRNDCKVCRKSNNLDNMVLCPRCEEWYHYRCAG
FT                 VDESVADRSWICANCLILPPVDPPGQTSTPVSNNPVGLTAPSANHPGIVTS
FT                 APFSSSSLTTVATTASNGQSILTEQARASLRWIQEQREILEREMEENHRQE
FT                 MERKRMELKKLANKAMMGIIDTTKDGLANSLDEQPGAAAAGICKVQNWMQQ
FT                 VVGEMKDLSVAQPSGRAEVITSGQPTFDISSVPTTASVNLSSFDPISSSTL
FT                 HGVRDRSSIVPPTTFASAQLCSVASSQSVNLPPFTISSVPQTTVAPPQLIS
FT                 SVQAEFDSSVRLGTMPGGLVSRVPTIPGWGINAPTNVVTACSTMPALLNYS
FT                 GLMPSERQPVVPPAPASTFLPGFSTNGREVNSSQFSQQLPLPGYTAAFGPA
FT                 GAPPNIPNNVPAFPRLYDPVGQHRAPTQHQLMARQVMPKDLPPFRGDPEDW
FT                 PLFYSAYVNSTTACGYTDVENLARLQRALQGRALDAVKSRLLLPACVPQVI
FT                 NTLYMLFGRPELIIQTLLNKIREIPPPRSDRLDTLISFGMAVQNLCDHLEA
FT                 AGQLAHLCNPTLLLVEKLPAQQRLDWALYKRQFVAVDLRTYATYMSTLVAA
FT                 ASDVTVLGDIKLSRASKGDRAKEKNFLNAHSVAELPKRESKEETTPIFLCL
FT                 ACNGAGHKVKDCGVFKKWGPESRWKIVQDHHLCRICLGKHGRRPCKSQTCC
FT                 GIEGCQQRHHQLLHTQSHKSHPPAEPKAAKPGNGSGEGVNAHRTEEKSTLF
FT                 RILPVQLSWNGKSVETFAFLDDGSSMTLVEQSVADCLGIDDGESLPLCLTW
FT                 TSNVNRKIPNSQRVSLKISSPGKSEQYALIDTRTVGNLKLTTQTLKYEELA
FT                 RKYAHLRGLPIKSYDSVVPGILIGSNNAGLIATLKLREGQLGDPLAAKTRL
FT                 GWTVYGFAADHTKTENFSFHICECHMEQGTDQELHDLVKQHFTLESVGVSA
FT                 DRTPESDEDRRARCILEETTKRTSKGFETGLLWRTDSVELPNSYPMAVRRL
FT                 ECFERRMNKDPGTRDSVQRQIQEYLENGYIHEVTPHELEYTDPKKVWYLPL
FT                 GVVRNPKKPNKIRLVWDAAAKVGGVSLNDMLLKGPDLLVSLAAVLCGFRQY
FT                 RVAVCGDLKQMFHQFRIRQEDVHSQRFLYREHPSKPIKIFVMDVGSFGATC
FT                 SPSQAQYIKNLNAEEHESEFPQAAVAIKKKHYMDDYLDSFDTEDEAIKVAL
FT                 EVKTVHDRGGFEMRNWHSNSTTLLERVGEPKQQQMKAISIDTESEAERVLG
FT                 LLWLPTEDSLAFAADLKLDGTVPTKRNILRWVMSVFDSQGILSHITVQGRM
FT                 IIQDTWRSQVTWDEEVNDATQTQWRKWIKLLEEVNKIRLPRAYFPGLSAVD
FT                 IGMVDLHIFTDASEEAYAATAYFRTVVNGKVYCALVMAKAKVAPLKAVSVP
FT                 RLELMGAILGARLAKAVCEYHTIPIRRRVLWTDSLATLAWIQSQHRRNSN"
FT   CDS           4943..5926
FT                 /product="BEL-85_AA-I_2p"
FT                 /translation="MAPLPDARLAATVRPFSYVGLDYFGPIQVKVGRSCVK
FT                 RWVALFTCLTIRAIHLEIAHSLSTESCKMAVRRFVARRGSPLEIYSDNGTN
FT                 FQGAGRELREQIEAIGKGLEETFTNTSTKWIFNPPSAPHFGGMWERLVRSV
FT                 KMALGSLCTDRNPDEETLATVIAEAESVVNSRPLTFIPLDDFAQEALTPNH
FT                 FLLLSSNGVAQPPKALAKLTKVTRSNWTTNQQLIDQFWKRWVREYLPTIAR
FT                 RTKWFNECDEVKVNDLVVVVNENQRNGWARGRVLSVIPGRDGRIRQAMVQT
FT                 SGGVFRRPVSKLAVLQVRDMSNAQSSVNPEVRYGPG"
XX
SQ   Sequence 5928 BP; 1606 A; 1460 C; 1586 G; 1276 T; 0 other;
     aaagcttgaa gatattgacg taaacaactc ggtcacagga tgccggagac ggacaggaac        60
     gactgcaagg tttgccgcaa gtcgaacaac ttggacaata tggtcctctg tccacggtgc       120
     gaggagtggt accattatcg gtgcgctgga gtagacgaat ccgtcgcgga tcgaagctgg       180
     atatgcgcga attgcttgat tctgccacca gtcgatccac ccggccaaac aagtaccccg       240
     gtgagtaata atccagtcgg gttgaccgcc ccctctgcta accatccggg aatcgtgacg       300
     agtgcgccat tcagttcatc atcgcttacc acggtggcta ccacagcgag taatggacag       360
     tcgatactga ctgagcaggc aagggcgagc ctccgctgga ttcaggagca acgcgagata       420
     ttggagcgcg aaatggagga gaaccatcga caagagatgg aacggaagcg gatggaattg       480
     aagaagctgg caaacaaagc gatgatgggg attatcgaca ccacaaagga cggattggca       540
     aacagtttgg acgagcagcc aggagcggct gcggcgggaa tctgtaaagt gcagaactgg       600
     atgcagcagg tggtcggcga aatgaaggac ctctcagtcg ctcagccgag cggaagggca       660
     gaggtgataa catcgggaca acctacgttc gacatcagtt ctgttccgac aaccgccagc       720
     gtgaatttaa gctcgtttga tccgatttct tcatcaacgc ttcatggcgt tcgagatcgg       780
     tcatcgatag tgccaccaac aacgtttgct tctgctcaac tgtgttcagt tgcatcctcc       840
     caatcagtaa atctcccccc ttttacaatc tcctcagttc ctcaaaccac ggtagcccct       900
     ccgcagttga taagcagtgt acaagcggag ttcgattcct ctgttagatt gggaactatg       960
     ccagggggat tggtcagtcg ggtgccaact ataccagggt ggggaataaa tgcaccaaca      1020
     aacgtagtga cagcttgttc tacaatgcca gcgctattga actattccgg attgatgccg      1080
     agtgaaagac agccggtggt acctcctgca cctgcctcga cattcttacc aggattctcg      1140
     acaaatggga gagaggtaaa tagtagccag ttctctcaac agctgccgct acctgggtat      1200
     acagcggcct tcggtccagc tggcgctcca ccaaacatac cgaacaacgt cccagcattt      1260
     ccgagactct acgatccagt gggacagcac cgtgctccca cacaacatca attgatggcg      1320
     aggcaggtta tgccaaagga tctccctccc tttcgcggtg atccagagga ttggccattg      1380
     ttttatagcg cttacgttaa ttcgacaacg gcgtgcggct atacagacgt ggagaactta      1440
     gccagactgc aaagggcgct gcaaggtagg gcgctagacg ctgttaaaag tcgcctactg      1500
     cttccagcgt gtgtgccgca ggtcatcaac acactctaca tgctgtttgg tcgtccagag      1560
     ctgataattc agacgcttct gaacaagatc cgcgagatcc cgccaccgag atcggatcgg      1620
     ctagatacac tgatctcatt tgggatggct gtccagaatt tgtgcgatca tctggaggca      1680
     gcagggcagt tggcgcactt atgcaacccg actctactac ttgtggaaaa gcttccagca      1740
     caacaacgtt tggattgggc attatacaaa aggcaattcg tagcagtaga ccttcgtacg      1800
     tatgcaacct acatgtctac attggtggca gcggcctcgg acgttacggt tctcggagac      1860
     attaaactat cacgagcgag caaaggagac cgagccaaag agaagaactt tctcaatgct      1920
     cattcagtag ccgagctgcc gaagagggaa tcaaaagaag agaccactcc tatatttcta      1980
     tgtttggcgt gcaacggtgc cggtcataag gttaaggact gtggcgtctt caagaagtgg      2040
     ggtccagaaa gcagatggaa gattgtgcag gatcatcacc tgtgtcgaat atgcttggga      2100
     aagcatgggc gtcgcccgtg caagtcgcaa acctgctgcg gaattgaagg ctgtcaacag      2160
     cgccaccatc agctactcca cacgcaatca cataagtcac accctccagc tgaaccgaaa      2220
     gcggcgaaac caggaaatgg ctccggggaa ggagtaaacg ctcatcgcac tgaggagaaa      2280
     tcgacgctgt ttcgaattct tccggtacaa ttgtcttgga acgggaagtc tgtcgagacg      2340
     ttcgcttttc tggacgacgg atcatccatg acgttggtcg aacaatccgt tgccgattgc      2400
     ttgggaatcg acgacggtga gtctctacct ctatgcttaa catggaccag caacgtgaac      2460
     cggaaaatac ccaactctca acgagtctcc ctaaagatct ccagtccagg gaaatccgag      2520
     caatacgcac tgatcgacac tcggacagtt ggcaatttga aactcacaac gcaaaccctg      2580
     aagtacgagg agctggcacg aaagtacgcg catctacgtg ggttgccgat taaaagctac      2640
     gactcggttg taccagggat tctgatcggg tcaaacaacg ctggtttaat tgcaacgtta      2700
     aagctgcgtg aaggtcaact aggcgacccg ttagcagcta aaactcgtct agggtggacc      2760
     gtttatggat tcgctgctga tcatacgaag acggaaaact tcagcttcca tatttgtgag      2820
     tgccatatgg aacaagggac agatcaggag ctacatgacc tggtgaagca gcatttcacc      2880
     ctcgaaagtg tgggagtatc agcggatcga acccctgaat cggatgaaga cagacgagct      2940
     cgctgtatcc tggaggagac aacgaaacgg acttcgaagg gcttcgaaac aggtctactg      3000
     tggcgaacag actccgtgga acttcctaat agctatccaa tggcagtgcg ccgtctagaa      3060
     tgcttcgagc ggagaatgaa caaggaccca ggcacgcgtg atagcgtgca gcgtcaaatc      3120
     caagagtatt tggagaatgg ctacatccac gaggtaacgc cacacgaact ggagtacacc      3180
     gatccaaaga aggtctggta cttaccactg ggggttgtta ggaatcccaa gaagccgaac      3240
     aagatcaggc ttgtctggga cgcagcggca aaggttggag gtgtatcatt gaatgatatg      3300
     cttctgaaag gtcccgacct gctagtttct cttgctgcag tgctgtgtgg tttccgacaa      3360
     taccgagtgg cagtctgtgg cgatcttaag caaatgttcc accagtttag gatacgccag      3420
     gaagacgtgc acagtcagcg gttcctgtat cgtgagcatc catcgaaacc aatcaagatc      3480
     ttcgtaatgg acgtgggtag ttttggtgcc acttgctccc ctagtcaagc gcagtatatt      3540
     aaaaacctca atgcggaaga gcatgaatca gagttccctc aggcagctgt cgccatcaaa      3600
     aagaagcact acatggatga ctaccttgat agcttcgata cagaggatga agcaatcaaa      3660
     gtagcgttgg aggtaaagac ggtacatgat cgcggcggct tcgaaatgcg gaattggcac      3720
     tcgaattcga cgacactgct ggaacgggtc ggagaaccga agcaacagca aatgaaggcg      3780
     ataagcatcg acaccgaaag cgaggcggaa cgagtgttag gcttgttatg gctaccgacc      3840
     gaggatagtt tagctttcgc agcagatctg aagctggacg gaactgtccc tacgaagcgg      3900
     aacattctac ggtgggtgat gagcgtattt gattcccaag gaattctgtc gcatattacc      3960
     gttcaaggac ggatgatcat acaagatacc tggcgaagtc aagtcacttg ggacgaagaa      4020
     gtcaacgatg cgacgcaaac ccaatggcgc aagtggatta agctattgga ggaggtgaat      4080
     aaaatcagac tccctcgagc ctactttcct gggctctccg cagtggacat tggaatggtc      4140
     gatctacata tcttcacgga tgccagcgaa gaagcttacg cggctaccgc gtacttccgc      4200
     accgtggtga acggtaaggt ctactgtgca ttggtgatgg ctaaagcaaa ggtagcccca      4260
     ctgaaggctg tgtcggtacc gcgattggaa ctgatgggcg cgattttagg agcaagatta      4320
     gcaaaagcag tctgcgagta ccacacaatt cccattcgac gtcgagtatt gtggaccgat      4380
     tcattagcaa cgctggcttg gattcaatcg cagcatcgaa gaaacagcaa ctagtcactg      4440
     gctgtttgaa aaaggaggag cttcagcaag ctgaaaacag tctctggcgt atggcccaag      4500
     cagcggcgta cccggacgag atagcagttt tgaaacaaca gctcacaaac tccaagaagc      4560
     aaattgaaaa atcaagcccg gtctataaac tctcaccgta tattgacgaa cattgtgtaa      4620
     tgcgcatgga tagccgtatt gggatgcttc catatatcgc ttatgatttc aagtttccag      4680
     ttatcctgcc acgtaatcac cgactaacaa ttctcctcat caactgcttg taacgttggg      4740
     cgccaattgc aatggatgat gggcaaagaa ccaaaatggt aacaactggt accaccgtag      4800
     gtacttgcac gcgaacaacg agacagtgca caacgaaatc cgccaacgat ttcatgtttc      4860
     gaatcttcgt acagtggtga ggcaagtggc aaaaaactgt caagcttgca aggtttccaa      4920
     agccttgccg gtgactccca agatggctcc actacccgac gctcgtctcg ccgctactgt      4980
     tcgcccattt tcctacgtcg gactcgacta ctttgggcca atccaggtaa aggtgggacg      5040
     cagttgtgtc aagcgatggg tggccctttt cacgtgtctg acgatcaggg caatccactt      5100
     ggaaatcgcg cattcgttgt ccacagagtc gtgcaagatg gctgtgcgac gtttcgtagc      5160
     tcgccgagga tcgcccttag aaatctactc ggataacggc accaattttc agggtgcagg      5220
     ccgagaactg cgagagcaaa tcgaagctat aggtaaagga ttggaggaga ctttcaccaa      5280
     cacgagcacc aagtggatat ttaatccacc gtccgcgcca cactttggag gaatgtggga      5340
     gcgcctcgtc agatcggtca aaatggcatt ggggtccttg tgtaccgatc gaaatccaga      5400
     cgaagagacg ctggcaaccg ttatcgctga agcggaatcc gtggtcaact cacggccact      5460
     aacctttata cccttggacg acttcgccca agaagctcta acaccaaacc acttcctcct      5520
     gttaagctcc aatggggtag cacaacctcc caaggcatta gcgaagttaa cgaaagtgac      5580
     gcgatcgaat tggaccacga accaacaact aattgatcag ttttggaaac gctgggtgag      5640
     ggagtacctc ccaacgattg ccagacggac taaatggttc aacgaatgcg acgaggtgaa      5700
     ggtaaacgac ctggtggtcg ttgtgaacga gaatcaacgt aacgggtggg ctagaggccg      5760
     agtgctctcg gtgattcctg gccgagacgg ccgcatccgt caagcgatgg tgcagacctc      5820
     aggcggagtc ttccgtcgac cagtatcaaa attggcagtg ctgcaagtgc gagacatgag      5880
     taacgcacag tcttctgtga acccggaagt gcgctacggg ccggggga                   5928
//
ID   BEL-85_AA-LTR repbase;    DNA;    INV; 689 BP.
XX
AC   supercont1.324;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-85_AA_;
KW   BEL-85_AA-I; BEL-85_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-689
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.324; Positions  160013  159325.
XX
SQ   Sequence 689 BP; 226 A; 135 C; 117 G; 211 T; 0 other;
     tgttgcagac actggcaaca cggacgatac agatataccg attcgcaaag cccctcgaac        60
     ggattctgta tacgcaacaa atgatacaat gcagaataga ctaacagtcg aacaggttga       120
     cagctcgaca gagatgaaaa gctcttaaga tgcaagtcat tctagtgcac tattggcatt       180
     tcctaattct ctgctaaata ctatagtgat aatactacaa tcgtgaatta cttctgatag       240
     aaactggatt agttgatcgc acttatttgt aggtttgttt gagtgatagt aagtttccct       300
     caatacttaa taagtcttcc gaattcgata ggttgataca gtcgagtagg acaagcacat       360
     tttatttgag ctggctttca gatattcgat atcatatcac accaattgta agtcctgttt       420
     attcctctct gataatcact actgttatta tactctaatt aaatattatt gaattcgtta       480
     gcgccgtatt acagtccagt ccccagtcag acacaaattg catttagttg gatttcgcta       540
     ctaaggaaga ccaatatgta agcaacttaa ccttgaattt agaactattc ttcatattaa       600
     aaaactaata aaatatctct agcttcaaga ataccgtcaa caaaactagg cgtttctctg       660
     gagaggtcat ctgaacgaat aatccaaca                                         689
//
ID   BEL-860_AA-I repbase;    DNA;    INV; 6345 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-860_;
KW   BEL-860_AA-I; BEL-860_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6345
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6345
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3176-3176 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(31..4632,4671..5297,5339..5968,5972..6343)
FT                 /product="BEL-860_AA-I_1p"
FT                 /translation="MSNKTSPTGPELDAATAVEGVTGPESKIRTIEAAVVT
FT                 GITNLRIVEHAASGAKNDEVKSVTGATSATAVQGFDLPSRVQESTNAAGSG
FT                 TSRPKYNALLSEARSMDSNRLVQNRTHVKPPNATIRVRVTRFSHCELCNDR
FT                 DNSRMVQCDNCDLWYHFTCVEVTGGIANQSWNCPMCSLNEGNPACAEEVRS
FT                 ETSIQELLPNPPNSRKATSHTSSKRSEQRKLDRQLQMLEEMKQIEQKYLKE
FT                 KYRLLDAADDDEATVTSDEIMGSAEMSKVQGWLRDTENCGEDYDSGLVEED
FT                 PHSRVHLNKSKANVNLPDHRRQAPIDHLAQRGQHSFVPNLRSTPREVVTQL
FT                 MTKPRIDSLDRFDFMHGNPHRSQPHTVAAPITSRVQFHATSATGGAGGPSQ
FT                 TFRTDIPFRQPTVTNARSTLTQSVMGNQTLSGRQPSIHDHDSNIVENAYTL
FT                 NHSQLAARQAVPKELPEFYGNPEDWPLFYSMYISSTQMCGYSNEENMLRLR
FT                 KCLKGKALEAVRCRLLHPSNVSSVVSTLRMLYGRPEAIVQASIKKIRNLPP
FT                 PQVEKFDTIINFALTIENLVATIEACDVEDFIYNAALKYELIERLPPVLKL
FT                 DWARHSRNHPAPNLMDFSRWLYAIAEDAFTVMQTSSSISKNRWTKNDGFIN
FT                 AHSEGELNETQSSQTTSQGSQSAHTAECIVCKGSCSSIPKCERFTQLSLDA
FT                 KWDVVREGRICRKCLRKHNGICRQQKQCGVRECILLHHPLLHNEKPAIKNT
FT                 NSKADGAGSCNIHQTQTNDVLFRIVPIILYGPQKSVHSYAFIDDGSELTLM
FT                 EEDLAKELGVAVIRSSLCLKWTGGTKRVEEESQLVNVKISGIGIQSRQYKM
FT                 DNVHTITSLQLRPQMLLFSEMRQKFSHLQGLPVASYNNVSPRILIGLDHAE
FT                 LGHTMKSREGRLNQPIAAKTRLGWILYGSCSQTNSKLNHVNFHSISLCECN
FT                 NEIDSTLHNAMKNYFALDSLGISKPEKTLLSTDEQRAVDLLEKGTLLKNGR
FT                 YETELLWKYDNARFPESKGMAYRRWLCLEKRMNRDPQFAETVRSKIADYQS
FT                 KGYICKLTYKELQNENQQREWYLPMFPVLNPNKPGKVRLVWDAAAKTHGVA
FT                 LNSLLLKGPDLLTSLLTVLVQFREFRIGLCGDIRKMYLQILLKGDTRLCFF
FT                 WKENEQDIDPSVYAMRVLSFGVSCAPSIAQYVKNVNAQRYEEQHPTAVNSI
FT                 VKQHYVDNMLSSVDTEEEATDLARTVKKIHAEAGFEMRNWISNCPEVLSAL
FT                 NEQGTEEKELTLAEGVSTEKVLGMWWNTATDCFTFKISPRYDPVLISGIRR
FT                 PTIREVLRTLMMIFDPLGLIGHFLMFLKRILQEIWRTSIGWDDPIEENQFE
FT                 LWLQWLKVLPEVTKVEIARCYRTTTSVRSSNDVQMHIFVDASEQGFAAVVY
FT                 LRFHEDDNIEVALVASKTRVAPLKFLSIPRSELQASVIGVRLATSIGQSLS
FT                 IRVNRRYFWTDSSDVISWLNSDHRRYSQFVAFRISEILESSDVSEWQWLQT
FT                 KENVADEGTKCETATRHVKKTESEWPSKKHISEATKVELRPHLLVHMLLPE
FT                 PIIDPNKFSKWTSLLRSTAFVFRFIKNVRAASQEHKTSGALTQPELAEAEN
FT                 YLYRLSQCSAYADEIAALSNSKVSGSWKLTVLKTSPIYRLCPFLDEHKVLR
FT                 VHGRTAACKYIDTNTANPVILPRHHQITKLIVAHYHRNYQHQNHTTIINEL
FT                 RQRYSISRLKATYNRVRKECQQCFAPVSPRRLRSMPLSRLDAYARPFTHMG
FT                 VDYFGPLLVSIGRRQEKRWILLATCLTVRAIHLQVVYSLTTNSCIMALRNV
FT                 MARRGIPAVIYSDRGTNFQGASKELMVAMENIDHERVATEFTTPYTTWTFI
FT                 PPASPHMGGAWERLVRTVKQNLYKFQSNRSVSMEVLENMLAEVENVVNSRP
FT                 LTNIPIDNDQSPVLTPNHFLLGSSNGMRAVQFDDSSTVLKNCWQLSQAMAN
FT                 QFWKQWIRDYLPSITRRTKWFEKVKPVEVGDVVILVDPKLPRNTWPKGRII
FT                 GIKRGKDGQVRSATIHTCSGIYERPVVKIAVLDVGVKHHTRQDVQKRIPGE
FT                 "
XX
SQ   Sequence 6345 BP; 1971 A; 1404 C; 1483 G; 1487 T; 0 other;
     atttacaaaa ttctatgcta agcatacaaa atgtctaata agacatcgcc aaccgggcct        60
     gagctggacg cggccacagc cgtggagggt gtaacagggc cggagtcgaa aatacgtacc       120
     attgaagcag ctgtagtaac cggaatcacc aacctcagaa tcgtggaaca cgcggcaagc       180
     ggagcgaaga atgatgaggt gaaatcggta actggcgcga cgagcgcaac agcagtgcag       240
     ggattcgatt taccgtctag agtacaggag agcactaacg cggctggcag tgggaccagt       300
     aggccgaaat ataatgcatt attgagcgaa gctagaagca tggatagtaa tcgtctggtg       360
     caaaatagaa cacacgttaa accaccaaat gcgactatcc gcgtcagagt gactcggttc       420
     agtcactgcg aactctgcaa cgatcgcgat aacagcagga tggtacaatg cgacaactgc       480
     gatctgtggt accattttac atgtgtcgaa gttactggtg ggattgcaaa ccaaagttgg       540
     aattgcccta tgtgttcgtt gaacgaaggt aacccagcat gcgcagaaga ggtacgttct       600
     gaaacttcaa ttcaggaatt gcttccaaat cccccaaact cgaggaaagc caccagccat       660
     acaagtagca agcgaagtga gcagcgaaaa ctagataggc agttacaaat gctggaggaa       720
     atgaagcaaa ttgagcaaaa atatctgaag gaaaagtatc gattgctgga cgctgcggat       780
     gatgatgaag caaccgtgac gagcgatgaa attatgggaa gtgcagagat gtcaaaagtt       840
     caaggttggc tgcgggatac agaaaactgt ggagaagact atgactccgg tttagtcgaa       900
     gaggatcctc atagtagagt acatttgaac aaatcgaaag caaacgtgaa tctacctgac       960
     catagaaggc aagcacccat cgatcatctt gcacagagag ggcagcatag ttttgttccc      1020
     aacctgcgtt ctactccccg agaagtagtt acacaactca tgacgaaacc ccgaatagat      1080
     tcgctcgacc gattcgattt tatgcatggc aatccccatc ggagccaacc tcatacagtt      1140
     gcagccccca tcacctcaag agtgcagttt catgcgacgt cagcgactgg aggtgcaggc      1200
     ggtccctctc aaacattcag aacagatata ccgtttcgcc aacccactgt gaccaacgca      1260
     agatcaacgt tgacgcaatc agtgatgggc aatcaaacac tttcaggcag acaaccgagc      1320
     atacacgatc acgactcaaa cattgtcgag aacgcttata cacttaatca cagtcaactg      1380
     gcagcacgcc aagctgtgcc taaagaacta ccagaatttt acggaaatcc cgaagattgg      1440
     cctctctttt attcaatgta catatcctca acacagatgt gcggctactc gaacgaagaa      1500
     aatatgcttc ggttaagaaa atgtttgaaa ggaaaagcgc tggaagccgt ccgatgccgg      1560
     ctgctgcatc catcgaacgt ttccagtgta gtatcaactc ttagaatgtt atatggaaga      1620
     ccagaagcca tcgttcaagc atcgataaaa aagattcgta atttaccacc gccacaagtt      1680
     gaaaaattcg acaccataat taatttcgct ttgacaatag aaaatctggt agccaccatt      1740
     gaagcatgtg atgttgagga tttcatatac aacgctgctt tgaaatatga gttgatagaa      1800
     cgccttccac ctgtgctaaa actagactgg gctaggcatt ctaggaacca ccccgcaccc      1860
     aacttaatgg acttcagtcg ttggttgtac gcgatcgctg aagatgcgtt cactgttatg      1920
     cagacgtcaa gtagtatttc aaagaatcgt tggactaaga acgatggttt tatcaacgcc      1980
     cactctgaag gtgagctaaa tgagactcag tcatcacaaa ccacatcgca aggatcacaa      2040
     tcggctcata cggccgagtg tatagtttgt aaagggagtt gtagctcaat accgaaatgt      2100
     gaacgattca cacagctcag tttagacgcg aaatgggatg tagtacgaga aggaaggatt      2160
     tgtcgcaaat gcttgcgtaa acacaacgga atatgcaggc agcaaaaaca atgtggtgta      2220
     cgggagtgca tattgctgca tcacccattg ttgcacaatg aaaaaccagc aattaaaaac      2280
     accaattcca aagctgacgg agccggaagc tgtaacatcc atcaaacgca aaccaatgat      2340
     gttctgttta ggattgtgcc tattattcta tatggaccac agaagtcagt gcattcatat      2400
     gcatttatag atgacggttc ggagttaacg ctcatggaag aggatctagc caaagagcta      2460
     ggtgttgctg ttataagatc gtcattgtgt ttgaagtgga ctggtgggac taaaagggtg      2520
     gaagaagaat cgcagttagt caacgtcaaa atttcaggca ttgggataca atcaagacag      2580
     tacaagatgg ataacgtaca tacaattacg agcctgcaac ttcgaccaca aatgctgcta      2640
     ttctcggaaa tgcgacagaa gttcagccac ctacaaggtt tgccagtcgc ttcttataac      2700
     aatgttagtc ctcgaatact aattggtctc gaccacgctg agctagggca caccatgaaa      2760
     agtcgagaag gaagactaaa tcagccaatt gctgccaaaa cacgtttagg gtggatactc      2820
     tatggaagtt gttcacaaac aaactcaaag ctcaatcacg ttaacttcca cagcatctct      2880
     ctgtgtgaat gtaacaacga aatcgatagt actctccata atgccatgaa aaattatttc      2940
     gctctcgaca gtcttggaat ttccaaaccc gaaaagactt tactgtcaac tgacgagcaa      3000
     cgtgctgtcg acctcctcga gaaaggaacc cttctaaaga atggacgcta cgaaacagaa      3060
     ctcctttgga aatatgacaa cgctcgtttc ccagagagta aaggcatggc gtataggaga      3120
     tggttatgtc tcgaaaagcg tatgaatcga gacccacaat ttgcagaaac agtgagatct      3180
     aagatagcag actaccagtc taagggatat atttgtaagc tgacatacaa ggagctgcag      3240
     aatgagaacc aacaaaggga atggtattta ccaatgtttc ctgttttgaa tcccaacaaa      3300
     ccgggcaagg taaggcttgt atgggacgct gcggcaaaaa cacacggtgt agcactcaac      3360
     tcgttattgt tgaaagggcc cgacctgttg acatccctcc tgactgtcct tgttcagttc      3420
     agagagtttc ggatcgggct ttgtggagat atcaggaaaa tgtacctgca gatactgttg      3480
     aaaggagata cccgactgtg cttcttctgg aaggaaaatg aacaggacat cgatcccagc      3540
     gtctatgcga tgcgggtgtt gtcgtttgga gtatcatgtg cgcctagtat cgcgcaatac      3600
     gtgaaaaacg tcaatgcaca gagatacgaa gaacagcatc ccacagccgt taattctatt      3660
     gtcaagcaac actacgtgga taacatgctt tcaagcgttg acacggaaga agaggctacg      3720
     gatttagcac gcaccgtgaa aaaaatccac gctgaagccg gtttcgaaat gcgaaattgg      3780
     atttcaaatt gcccggaagt attatcagct ctgaatgagc agggaactga ggagaaagaa      3840
     ttaaccttgg cagaaggagt tagcaccgaa aaagtccttg gaatgtggtg gaatacggct      3900
     accgactgct ttacgtttaa aatatcgcca agatatgatc ctgttctcat atcgggtatt      3960
     cgtcgaccaa cgatacgtga ggtgctaagg actttgatga tgatatttga tcccttagga      4020
     ctgatcgggc actttttaat gtttctgaaa aggatattac aagaaatttg gagaacgtcc      4080
     atcggatggg acgatcccat tgaagaaaat caatttgaat tatggttgca gtggttgaag      4140
     gtacttccag aagtcacgaa ggtagagatt gctcgatgtt acagaacgac tacctcagtc      4200
     agaagctcta acgatgtcca aatgcatata tttgtcgacg caagtgaaca aggttttgca      4260
     gcggttgtat acctgagatt tcacgaagat gacaacattg aagttgcctt agtagcctca      4320
     aaaacccgcg tggcgccgtt gaaatttctg tcaatccctc gatccgaact tcaagctagt      4380
     gttataggag ttcgattagc gaccagtata ggacagtctc tctcaattag agtgaatcga      4440
     agatattttt ggaccgactc aagcgacgta attagttggc tgaactcaga tcaccgaaga      4500
     tatagccagt ttgtcgcttt ccgtatcagc gagatactcg agtcctcgga tgtaagtgaa      4560
     tggcagtggc tacagaccaa agagaatgtc gcagacgaag gaacaaaatg cgaaacggct      4620
     accagacatg tctaaaaata gtcgctggtt caatggacca cagtttttga aaaaaaactg      4680
     aaagcgaatg gccttcaaag aagcacatct cagaagcaac taaggtagag ctgcgaccac      4740
     atctactggt acacatgctg ttaccggaac cgattataga tccgaataaa ttttcaaagt      4800
     ggacatcact actacgtagc acagctttcg tgtttcgttt catcaaaaac gtgagagcag      4860
     caagccaaga acataaaacc tctggagccc tgacacaacc ggagttggca gaagctgaaa      4920
     attatctata tcgattaagc cagtgcagtg cctacgcaga tgagatagca gcattatcta      4980
     actcaaaagt atccggtagt tggaagttga cagttctaaa gaccagccca atataccgac      5040
     tctgtccgtt cttagatgaa cacaaggtgc tacgcgtaca cggtcgaacc gccgcgtgta      5100
     aatatataga cacaaataca gctaatccag taatcctccc aaggcaccat caaattacga      5160
     agcttatcgt ggcccattac catcgtaact accaacacca gaatcatact acaattatca      5220
     acgagttgcg ccaacgctac agcatttcac ggttgaaagc tacgtacaat cgggttcgaa      5280
     aggaatgtca acagtgctaa aactatcgtg ctcaaccgca gccaccgctg atgagtgatt      5340
     tgcccctgtc tcgcctagac gcctacgctc gatgcccctg tctcgcctag acgcctacgc      5400
     tcgtcccttc actcacatgg gtgttgacta tttcggaccg ctattggtca gcatcggacg      5460
     acgacaagaa aaacgatgga ttctgcttgc tacttgtctt accgtccgcg ctattcatct      5520
     tcaggtggtt tattccttaa ctaccaactc ctgtataatg gcattaagga atgtgatggc      5580
     aaggagagga ataccagcag tcatctatag cgacagaggc acaaattttc aaggtgcgag      5640
     taaagagctt atggtagcta tggaaaacat cgaccacgaa agagttgcga cagaatttac      5700
     tacaccgtac acaacatgga ctttcatccc tcctgcgtcg ccacatatgg gtggtgcgtg      5760
     ggagcgcctt gtgcgtacgg taaaacaaaa cctttacaaa ttccagtcta atcgcagtgt      5820
     atctatggaa gttcttgaaa atatgttggc agaggtagag aatgttgtta actctcgccc      5880
     actgactaac attcctatcg ataacgatca gtcaccagtg ttgacgccca accattttct      5940
     tttggggtcc agtaacggaa tgagggcttg agttcagttc gacgacagtt ccacagtgct      6000
     gaagaattgc tggcaactat cccaagccat ggcgaatcaa ttttggaaac agtggattcg      6060
     agactatttg ccatcaatca cacgaaggac aaaatggttt gagaaagtga aacccgttga      6120
     agttggcgac gttgtcattc tagtggaccc taaattacct cggaatactt ggcccaaagg      6180
     cagaatcatc ggcatcaagc gtgggaaaga cgggcaagta cggagtgcta cgatacatac      6240
     ttgcagcggg atatacgagc gaccagtcgt gaaaatagcc gttcttgacg taggcgttaa      6300
     acatcatacg cgtcaggatg tccagaagcg tattccgggg gagag                      6345
//
ID   BEL-860_AA-LTR repbase;    DNA;    INV; 628 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 25.10, Created)
DT   12-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-860_AA-I;
KW   BEL-860_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-628
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-628
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2969-2969 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 628 BP; 217 A; 122 C; 109 G; 180 T; 0 other;
     tgttgattgc gccacgtcaa ataacccatc taactcttca tgccccatgg cgattgacgt        60
     tgaacatcaa acacggcgtt gtcatttatc taccaaacac aacattcagc agaatgacac       120
     aatgaaggag agacaatagc catacagcca cgtgacgact tctaatctaa agcgttgtga       180
     aattacctct taaatgcacc tttaatttgc tttatctaaa gttaatattc cgttcactta       240
     gggaatttta taaaatagta tacagataat cttgaattta tgattaaatg tgagatataa       300
     tggattatga aatgaactaa atggtcacct aactatgttt gcaattacag agtaagacaa       360
     acatgctcca ttgaactaat attgatagat ttaatcgctc ttagcttgcg ggcatgagcc       420
     ctagcgactg aaattatcga tgtattacga ttgacaagtc tagggtccaa tcatacattt       480
     agtatagacc agacaagaca gtgaccataa agttggattc gacgaaccgt attgtatagt       540
     tgaggggtag caaacaccat agaattttgt aattatatct gagtcgaaca ataaattgac       600
     aaaatctact acccgctacc gcccaaca                                          628
//
ID   BEL-861_AA-I repbase;    DNA;    INV; 5653 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 25.10, Created)
DT   13-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-861_;
KW   BEL-861_AA-I; BEL-861_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5653
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5653
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           10..1515
FT                 /product="BEL-861_AA-I_1p"
FT                 /translation="MNTGSNPRLPDPNETAYNCGKCNRPDEDESQMVFCDN
FT                 CQRWFHFGCQGVTSEVQEDHDWVCNECTSDEKNPDDAEEKELLEAEQSIAV
FT                 ERARLSALIERKKRVARMKLELEMEKREALWQLEKQELEAKAVAVEEFNKK
FT                 KRAEKEKLQRRIEKALSERTELEKADNSIPFCRKTSTPTVDTEKVVEKLKS
FT                 MKVNVNSTRAKVVDTGTTSESECDGESVSDTSEASGKVKAVPTKAQLSARQ
FT                 FLARRLPTFSGKPEEWSVFITSYETTTEACGFSNLENLVRLQECLKGAALE
FT                 AVGSRLLLPQFVPKVIQELREQFGQPEQILETLLVKVRSADSPKADKPASF
FT                 ITFGRLVQQLCDHIEATHLEDHLVNPLLIGELAKKLPPSTKMDWIRFKRSE
FT                 IGDRKKVTLRTLADFLAEIVSVATEAVNLVDGQASSNRLTNRERSRERNKL
FT                 KHTGAFVNLHNEDESSFREDEPQKRIPCIMCGETNHRLRNCDEFLKVDPAH
FT                 RLKAVM"
FT   CDS           1470..5621
FT                 /product="BEL-861_AA-I_2p"
FT                 /translation="RVSKSRSSASIEGSNVKLTSAAKCKINIRCKVANCQG
FT                 LHNTLLHQPSVHSTCYAHTSVASSPVIFRIVPVIVYNGDKALRVLAFLDEG
FT                 SSYTLIEASVAEELGCKGVVQPLRVSWTAGMTRLERESKIVNLAVSSMDSS
FT                 QKTEMKSAHTVKELGLPKQTMRFAEFVNSYQHLRGLEVADYPMERPRMLIG
FT                 LKHLHLFAPIESRVGNPGEPIAVRSPLGWTVYGPHEKPHSESTFVGHHTCA
FT                 TVSNEDIYRLLKSHYILEDSAVLVDLLPESSDDRRAREILEKTTVRIGERF
FT                 QSGLLWKGEDIRFPDSFKMAEKLMKSLEKRLVQNPELQQNVQNQIMDYVEK
FT                 KYCHKATRQELSSTERRKVWYLPLNVVLNPKKPGKVRLVWDAAAAVQEVSL
FT                 NSMLLKGPDLLVSLPSVICQFRERKIGFGGDIREMFHQVRIRPEDRQAQRF
FT                 LYGGEVYVMDCAIFGATCSPSQALYVMHKNARELEKDYPDATEAVVKKHYV
FT                 DDYFDSVDTVDEAVKRAEDVRKVHSHGGFQIRNWVSNSEKVLTRLGERQVN
FT                 QEIHFHRDKTTDYERVLGIVWDTKKDVFTFSTQVKEDLQPYLTGGRQPTKR
FT                 IVLSCVMSFFDPLGLLAVFTIHGRIIVQDLWRSGCDWDEVIDEEAMEKWTR
FT                 WTVCLKEVEGVRIPRYYFVNGVALDYGSLQLHIFVDASENAYGGVGYFRIL
FT                 SGGVPYCALVQARSKVAPIKPHSIPRLELMAAVLGARLKDTILESHNFEVS
FT                 KLYFWTDSRTVRSWIKSDARKYRQFVAFRIGDILSRTKVSDWRWIPTKLNV
FT                 ADQLTKWTKESPLEGNSVWFEGPAFLYKPESEWPSDDVVEPNEPEELRAAC
FT                 LFHEVKKTAQLIDASRISKWNVLVRTMACVIRFVSNLRRKVNGLPIETLRA
FT                 GLNIPPSNRTKVDAVRKCLQREEFQKAEVVLWKQIQEEAFFDEIIILRQMR
FT                 DSSAECKAKIEKRSPLYKLSPILDDNDVIRVEGRTVQAEFLPFEMRFPIIL
FT                 PRGHVITRRLIEHYHQQHGHGHREAVVSDLMQRFCIPKIRVEVTKVMRNCI
FT                 WCKVYKCKPTEPRMAPLPTQRVTPFLRPFTYTGVDFFGPISVAVGRRTEKR
FT                 WVALFTCLTTRAVHLEAARNLSTASCLMAIRRFVCRRGSPVEFFSDNGTNF
FT                 VGASKEIIKEINEDCSENFTNARTRWNFNPPAAPHMGGVWERLVRSVKEAL
FT                 NELDDGRSLSDEVLETVLAEAENMINSRPLTFVSKENTEPEALTPNHFLLG
FT                 YPSCGREMLCTPGNEARALRDQYERSRVLADKLWKRWIKEYLPTINLRPKW
FT                 HEEKASVQVGTLVYMADEDNRKSWVRGVVDEVVNGADGRIRQVIVRANGKL
FT                 YRRAVAKIAVPEIGNGTPGFV"
XX
SQ   Sequence 5653 BP; 1690 A; 1061 C; 1548 G; 1354 T; 0 other;
     ttctcaaaaa tgaatacagg atcgaaccct cgccttcccg atccgaatga gacggcctac        60
     aattgcggca agtgtaatcg gccggatgaa gatgaaagtc agatggtttt ctgcgacaac       120
     tgccagcggt ggttccattt tgggtgccaa ggagtgacgt cagaagtaca agaggaccat       180
     gattgggtat gtaacgagtg tacgagcgat gaaaaaaacc cagacgatgc ggaggaaaaa       240
     gagttgttgg aagcagaaca atcgattgct gttgagcgag cacggttgtc cgcgctgata       300
     gaaaggaaga agcgggtagc acgtatgaag ttagagctag agatggaaaa gagggaagca       360
     ttgtggcagt tggaaaagca ggagctagaa gctaaagcag tagcggtaga agaatttaat       420
     aagaagaaaa gggcagaaaa ggaaaagttg cagcgcagaa tagaaaaggc tttgtcagag       480
     cgtaccgagt tagagaaggc agataattcg ataccctttt gtaggaaaac ttccactccg       540
     acggtggaca cggaaaaggt agttgaaaag cttaaatcta tgaaagtcaa cgtcaactcg       600
     acacgcgcga aagttgtcga taccggtacg acctcggaaa gtgaatgtga tggtgaaagt       660
     gttagtgaca ccagcgaagc tagtgggaag gtgaaagcag taccaacgaa ggctcagctg       720
     tcggcgcgac agtttttggc tcggcgacta ccgacgttta gtggaaaacc agaagaatgg       780
     tcagttttca tcacaagtta cgaaacgaca acggaagctt gtggattctc caatctggag       840
     aacttggtgc ggttgcagga gtgcctgaaa ggagctgcac tggaggcagt aggatcgcga       900
     cttttactgc cccagtttgt cccgaaagtg attcaggagc tgcgagagca gtttggacaa       960
     cccgagcaaa ttttggagac acttttagtg aaggttagat ctgctgacag tccgaaggca      1020
     gacaaaccgg cttcatttat cacgttcggt cggctggttc agcagctttg tgaccatatc      1080
     gaagcaaccc atttggaaga ccatctggtg aatccgttgc tgattggcga gttagcgaag      1140
     aagctccctc cgagtacaaa aatggattgg atacgcttca agcgaagtga aataggcgat      1200
     cgtaagaagg tgacattgcg tactttggca gattttctgg ctgagatagt gtctgtagca      1260
     acagaagcag taaacttggt agacggtcaa gccagcagta atcgcttaac gaatcgggag      1320
     cgtagtcgag agcggaataa gctaaaacat acaggagcgt tcgtgaacct acacaatgag      1380
     gatgaaagtt catttcgaga agacgagcca cagaagcgca ttccatgtat aatgtgtggg      1440
     gaaacaaatc acaggttacg aaactgtgac gagtttctaa aagtagatcc agcgcatcga      1500
     ttgaaggcag taatgtaaaa ttaacatccg ctgcaaaatg taaaattaac atccgctgta      1560
     aggtagcaaa ttgtcaaggg ttgcacaata cactgttgca tcaaccgtct gtgcattcca      1620
     cgtgttacgc acataccagc gtagcgtcgt ctccagtgat tttccgtatt gttccggtga      1680
     tagtgtacaa cggtgataag gcgctgagag tgttggcgtt tttggatgaa ggctcatcgt      1740
     atacactgat cgaagcttct gtggcagaag agttgggatg caagggagtt gtgcaaccgt      1800
     tgcgcgtgtc gtggactgca gggatgactc gattagagag agaatctaaa atagtgaatc      1860
     tggccgtatc gagtatggat tctagccaaa aaaccgaaat gaaaagcgcg catactgtga      1920
     aagagttggg actaccaaaa caaactatgc ggtttgccga atttgtcaac agttatcaac      1980
     accttcgagg cctagaggta gctgattatc cgatggaaag gccacgtatg ctaattggtt      2040
     tgaaacatct gcaccttttc gctccaatag agtctcgagt tggaaatcca ggtgaaccaa      2100
     tagcggtgcg atcaccgctt gggtggacag tatacggacc tcatgagaaa ccgcactccg      2160
     aatctacatt tgtcggacac cacacatgtg ctaccgtgtc gaatgaagac atatatcggc      2220
     ttctaaaatc acattacata ttggaagatt cagcggtatt agtggacttg ttgccagagt      2280
     ctagtgatga tcggagagct cgggaaatac tagagaaaac gactgtacgt atcggtgagc      2340
     gctttcagtc tggattgcta tggaaaggag aagatattcg attcccggat agctttaaaa      2400
     tggcggagaa actgatgaag agtctcgaga aacgattagt gcaaaatcca gagctccaac      2460
     agaatgtgca aaatcaaata atggactacg tagagaagaa gtattgccac aaggcgacac      2520
     gtcaggaact atcatcgacg gaacggcgca aagtgtggta tttgccattg aatgttgtgt      2580
     tgaaccctaa gaagcccggt aaggtgcgcc tggtatggga tgcagcagcc gctgtacaag      2640
     aagtttcttt gaattcaatg ttgcttaaag ggccagatct acttgtttct ttgccatcag      2700
     tgatttgtca gtttcgagag cggaaaatag gtttcggtgg tgacatacgc gagatgttcc      2760
     accaagtgcg gatccgcccg gaagatcgcc aagcgcagcg atttttgtac ggtggagaag      2820
     tgtatgtgat ggattgtgcc atttttggag cgacgtgttc gcccagtcaa gctttgtacg      2880
     tcatgcataa gaacgcgaga gagttggaga aagattatcc agatgcaact gaagcagtgg      2940
     tgaagaaaca ttacgtggat gattactttg acagcgttga tacggtcgac gaggcagtga      3000
     agcgtgctga agacgttcgc aaggtacatt cacacggtgg tttccagatc agaaactggg      3060
     tttctaattc cgaaaaagtg ctgacgcgtc tgggagagcg acaagtcaat caagaaatcc      3120
     atttccatcg ggataagacg acggattacg agcgagtatt gggtattgta tgggatacca      3180
     aaaaggatgt atttacgttc tcaacgcaag tcaaggaaga tttacagcct tatttgaccg      3240
     gaggacgaca gccaacgaaa aggattgtat taagttgtgt gatgagtttt tttgatccgc      3300
     ttgggctatt ggctgtattt acgatccatg gacggattat cgtgcaggat ttgtggcgaa      3360
     gcggctgtga ctgggacgaa gttattgatg aagaagccat ggaaaagtgg acacgatgga      3420
     cggtatgtct gaaagaagta gagggagttc gaattcctcg atattacttc gtcaacggtg      3480
     ttgcattgga ctatggatca ctacaactac acatattcgt ggacgctagc gagaatgctt      3540
     acggaggtgt agggtacttt cgaatattgt caggaggagt tccttattgc gcattggtcc      3600
     aagctagatc taaagttgct ccaatcaagc cacattccat tccacgctta gaactgatgg      3660
     ctgcagtgtt gggtgctcgg ttgaaggata cgattctgga aagtcataat tttgaagtca      3720
     gtaaacttta tttctggact gattcgagga ctgtgcgatc gtggatcaaa tcagacgcac      3780
     gaaaatatcg tcaatttgtt gcattcagaa ttggtgatat cttgtcacga acaaaagtat      3840
     ccgattggag gtggattcct accaaattaa acgtagcgga ccaattgact aagtggacca      3900
     aagaatcacc tctggaaggc aatagcgtgt ggtttgaagg tccggcgttt ttgtataagc      3960
     ccgagagtga gtggccgagc gatgatgtcg tggaaccgaa cgagccggaa gagcttcgag      4020
     cagcatgctt atttcacgaa gtaaaaaaga cagcacaact aatagatgct tcgcggatct      4080
     cgaaatggaa tgtgttggta cgaaccatgg catgcgtgat ccggtttgta tcaaatctac      4140
     gaaggaaagt taatgggctg ccaatagaaa ctcttcgtgc tggcttgaat attccgccgt      4200
     cgaatcgaac aaaggtagat gcggttcgaa agtgtctgca aagggaagaa ttccagaaag      4260
     ctgaagtggt attgtggaaa caaatacaag aagaagcatt cttcgacgag ataataattc      4320
     tacgacaaat gcgagacagc agcgcagagt gtaaagctaa aattgaaaag agaagtccgt      4380
     tatacaaatt gtcgccgatt ttggatgaca acgatgttat tcgtgtagaa ggtagaacag      4440
     tacaagcgga attcttgccg ttcgagatgc gatttcccat cattctacca agaggacatg      4500
     tgataacgag gcggctgatt gaacattatc atcagcaaca tggtcatgga caccgggaag      4560
     ccgttgtaag tgatctaatg cagagattct gcatacccaa aatcagagtt gaagtcacga      4620
     aggtaatgcg gaactgtata tggtgcaaag tatacaaatg caaaccaact gaacctagga      4680
     tggcaccact accaacacag agagttacac cattcctccg tccttttact tacactggtg      4740
     tggacttttt tggtccgatt tcggtggcag tcggacggcg aactgaaaag cgatgggtag      4800
     cattgtttac ctgtctaact accagagccg ttcatctgga agcagctaga aatttgtcta      4860
     cggcatcatg tttgatggca attcgtcggt tcgtatgtcg tcgagggtct ccagtggaat      4920
     tcttctctga taatggaacg aattttgttg gagctagcaa agaaatcatc aaagagatta      4980
     atgaagactg cagtgaaaat ttcactaatg cgcgaacgag atggaatttc aatccaccgg      5040
     cagccccaca catgggagga gtatgggaaa gattggtcag atctgtgaaa gaggccttaa      5100
     acgaacttga tgatgggcga tccctttcgg acgaagttct ggagacagtt ttggctgaag      5160
     ctgaaaatat gataaattca agacccttga cgtttgtgtc gaaggagaac acggaacctg      5220
     aagctctcac tccgaaccat tttctcctcg gatatccatc gtgtggaaga gagatgctgt      5280
     gtacacctgg aaatgaagca agagcgttac gcgatcagta cgagcggtcc agagtccttg      5340
     ccgataagct atggaaacga tggattaagg agtatctgcc gactataaac ttaaggccga      5400
     agtggcatga agagaaagct tcggtgcaag ttggtactct agtatatatg gcggatgaag      5460
     acaacaggaa gagctgggtg agaggagtag tagatgaagt cgtcaatgga gctgatggta      5520
     gaatcaggca agtgatagtt cgagctaacg gaaaattata tagacgagca gtggcaaaga      5580
     ttgcggtgcc ggagattgga aacggaacac ctggtttcgt atagaggatc tccaccagag      5640
     ttacgggagg ggc                                                         5653
//
ID   BEL-861_AA-LTR repbase;    DNA;    INV; 402 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 25.10, Created)
DT   13-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-861_AA-I;
KW   BEL-861_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-402
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-402
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2993-2993 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 402 BP; 149 A; 51 C; 99 G; 103 T; 0 other;
     tgttgcggca cctggccaca ctgcacgaaa cgatgggtgg cgaaatttag gtagttgaat        60
     tcaacgcgcg tcggaaatgt caaccatcta gagaaaggga gaaacaaaaa caaaaccaag       120
     gattgcgaag agctattgcg gtgtgaattt gttcctaaaa gaaaagttga attatcggtt       180
     aaagtgaatt agtagtacgg gtgttattag taaaaataga agtagcggac agtttaaaga       240
     gattgttaga ggaagtttgg aaagtgatag cgaggagtga aaaactattc atgtatgtta       300
     gaattagaac aaaatggtga aaaatgaaac taatatacta tttttacagt tttgagctgc       360
     aacactagaa gctgcttcaa aaattagttt gagatccgaa ca                          402
//
ID   BEL-862_AA-I repbase;    DNA;    INV; 6565 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-862_;
KW   BEL-862_AA-I; BEL-862_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6565
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6565
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2975-2975 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6565 BP; 1845 A; 1392 C; 1553 G; 1760 T; 15 other;
     aaactggtcc ttcgagccgg attgctcgtt ttggtggctc aacggtggac gaacgattca        60
     cggaggcggg aacagacgca actatcgacg ccatcggata cctaccaaca aagacgctgt       120
     acgccatcac ggtcatcaag aggctttgtt ctgcactacc gtgccgtcaa gggaaattgg       180
     attcgccatc ttacagaacg agggtgccat tgctggacat tgcagcaggt tcatcaggtc       240
     atcgactcat cttcaataga ataatcggcg cattattcta gccgttcagg ttagtagaac       300
     tgtatatgtc cagccgaagc catgcatgca tcattctaac gcctttcttc gatgtcattc       360
     tccctcgcat catacctttg gacgagagct ctcactacca agctgatcag ttggtcgacc       420
     aaggcaaaca gcacggttcc taaagttcgc cagcgtgtat attcgattga tggaagccga       480
     ccgaaaccgt aaacgagcgt cacaatttcg accaaataca atgtgcagct tctacactgg       540
     gcgtagtgta tcataatgcg ttgtcaggta aatttattat aacgtgtatg cccagccgta       600
     gctggacttg tgatgctgcc tattaataaa ttgtggcctt ttcggtggac attggatcgt       660
     tgcttatttc ggaggcaatt ccctatcctt gcgtttcgca aggccccatt tggatttaat       720
     ttctgttgga ctgctagtaa ctgttgcgcc aggtgaggca aagtatatgt ctaccgaagc       780
     gggaatcttt ttggtactac atcggcattt ttcttcttcg ttgtactggt tcatcgctat       840
     gctgagttga ttgttgagac gtgtcgagtc cattgatgtc tatttccatt cacacaagtt       900
     catcattctg cccaatcgtt gaggtatcat caaacgttgc tccaggtaaa cataaagtat       960
     atgtcctgcc gggctaccct tttggatact acagtttctg cctttccctc gatgaacatt      1020
     ggtggcgttt tctgagaaat tgttgctgtt ttttgtgctg tgtgcagtgt aacggagacc      1080
     gaaggtatca acatttaatc ggttaggtga gctgcaacag tatatgtcct gccggggcta      1140
     aacatttcag aaaactacat cctctcttcg tttctgtcat tctacgagac caaccatgcc      1200
     gcctacgtct acgtcaacaa aaagggttcc agcactcaaa actctgctgg ccaaactgaa      1260
     gggtttgaac acatcgttcg acaacatcgc aaggttcgtg gatgaattca aggatgacac      1320
     cactgccaat caggtggcag tccggttgac tagacttgag gagatttggg agaaggtgaa      1380
     tgacacaatt tctgatattg aggctcacga agattttgag ttggatagcg aggcattttt      1440
     aaaggaaagg tcagaatttg agactcgatt tttcgatgta aaatcatttc tgttggatag      1500
     aagtagtgaa tttcaagggc aggatacacc aaataggcat gctgacactt cgctccagac      1560
     agttggcgat cacgttcgtc ttccacagat caaactgcag agttttgatg gaaacattga      1620
     cgaatggctc agctttagag atctgtttac ctcgttaatc cactggaagc cggatttacc      1680
     tgaagtggag aaattccatt acttgaaggg ctgtttggaa ggagaggcaa gggcactcat      1740
     cgacccatta aaaatcacca agggtaatta tcagatagca tgggatatgc ttctgaaaag      1800
     atacaataac agtaagttgt tgaaaaaaag gcagatacaa gctcttttcg acttgccggt      1860
     gttgaccaaa gagtctgttg cgagtttaca ttcattgtta gaaggtttcg agcgcattac      1920
     acaaactcta gatcaggtca tacaaccagt ggactacaaa gacctgcttc tgataaacat      1980
     cctcagttca agattagatc caataacacg tcgtggttgg gaggagctgt cagcttctaa      2040
     agaacaagat gccttgaagg acttaacgga gttcattcaa agaagaattc gtattctgga      2100
     atctttacct tcaaaaaata ctacagagtt tcggcgtgat acttctccta ccaaaaggaa      2160
     aaggacgttt ccggtgcgtg taagcaataa tgctgtgcag tctatttcgg gaaaatgtcc      2220
     tgtctgttct gaagttcatt ggattcatcg ttgtccctca tttcaacgga tgtcaacttc      2280
     aagcagagaa tctcttttac gatcacgagg cttgtgtcgc aattgccttc gcaatggcca      2340
     ccaagcaaga gaatgtacat ctaaatattc gtgtcgcagg tgtaaaggtc gtcatcatac      2400
     tatggtttgt ttcaaggcag atgggactag cagttctaat cctctagccg aagataagga      2460
     aatcttggta actgaaggca gaccctcagc ttctacttca acagcaagga ctgcggaagc      2520
     atctgttgcg gataccgtta ctgcaaatgt tgcatatggt cttgtatcga aggtgttatt      2580
     agctaccgca gtggtcttga tcgaggatga acgtggaacg aagtatcctg ctcgtgcttt      2640
     gctggactcc gggtcagaag gcaatttcat cacagagagg ctgtgccata gaatgaaagt      2700
     gtcgagagaa aaggtcaata ttgccgtaag tgggatagga caagctgaaa ctacggtcaa      2760
     acataggatt caagctacca ttcgctcgag gataacttca tattcgcgag agatgaattt      2820
     tcttatcatg agacggatca cggtgaactt accaactgct acggtgcaga cagcggattg      2880
     gaacatccca gaaggagttc aattagccga cccttcattt ttcttatcaa gtggagtgga      2940
     tttggtccta ggaatccaag gatttttcag tttcttcaac gcacgagaag agatttcatt      3000
     aggtgacggc ttaccggttc tcactcaaac cgtttttgga tgggtggtgt caggagaaat      3060
     cgcgtttatc accacaaact cgcaaacaat ctgcaatctg gctacatcag ataatctgga      3120
     gaatttgctc caaaggtttt ggtcctgcga ggaagtagga acccttggca actattctcc      3180
     agatgaggcg cactgcgagg agcagtttgg gcgcacaact cggcggcagg atagcgggcg      3240
     ttacgtcgtc acacttccaa tgaatcagca gatcgtatca cagttgggag aatcaaggga      3300
     aatcgctctc aaaaggttac atgcgttgga acggagatta gatcgtgatg aaaatttacg      3360
     acagcagtat aacgattttc tctcggaata tttggagctt gggcacatgc ggaaggtgtc      3420
     cgaggatgtg gtagatcaac ctggacgatg cttgttacca caccatgctg ttttgaagga      3480
     agcgagcaca actacgaaat taagggtggt tttttatgcg tcttgcaaaa catccacagg      3540
     cgtatcactt aacgacgttt tgtacgctgg tcccaccgta caacgtgatc tacgagcaat      3600
     cctgcttggt agcagattgt ataaaattat ggtcgttgct gacgttgaaa aaatgttcag      3660
     acagatcgac gtcgatgaac acgacacgtg tctgcagagt attctttgga gattttctaa      3720
     ggaggaacca gtggaaattt atgagttgat gacggtaaca tacggtacaa agtcggcacc      3780
     gtggcttgca acacgtactc ttaaacagct ggcaatcgat gaacgcaata gtttccctat      3840
     cgctgcgcgg actatcgaag aagatgtcta tatggatgat gttgtttcag gagcagacag      3900
     cattgaagca gcgattgaat tacgaaagca gttggacgat atgatgaaaa gaggaggctt      3960
     caatttacgg aaatgggtgt ccaatgactc ggcagttttg gacggcctag cccaggaaac      4020
     cctagctata ccaaacataa tggatatgga tgaagacctt gaaccggaaa tcagcacatt      4080
     gggactagat tggctgccca aatcggattg cctgagatac aatttccaag tgccaaaatt      4140
     caacatcggg cagctaatta caaaacgaca agttctctct ttgattgcaa cattattcga      4200
     tccgttgggt ctggttggag cagtgataac cagagcaaaa atatttatgc agaatctttg      4260
     gagtctttcg gatgacaagg gacgtcgaat tggctgggat gacattctgc cacaaacatt      4320
     tgtaaacgaa tggtgcgaat tttgctcaaa acttcctgct ataaattcac tgcgtattcc      4380
     tcgctgtatg cttgatgtcc atgcaaaaat tttggatata cactgcttct cagatgcatc      4440
     cgagaaggct tacggttgtt gcatttactt gagaggccag gatcaggatg gcaaaataac      4500
     agttcgctta ttcacgtcca aatcaaaggt cgctcctctt aaaatacagt ctctccctag      4560
     actagaacta tgtgccgcat tgttatcagc agaattgttg tcaaaggtac aggaggcgat      4620
     gaaggacaac tgtaaaacct ttttgtgggt cgataatacg tgtgtattga gatggattgc      4680
     aagcacccct agtacatgga ctacatttgt agcaaatagg gtatctaaaa ttcaatcact      4740
     taccagcgaa cacacctgga ggcatgttgc aggcattgaa aatccggcgg atctcatctc      4800
     aagaggaatc tcacctgctg aaatcgagga gaataaccta tggtggactg gacctacgtg      4860
     gttgagtgaa gattcaagca gatggccaaa acaacgcaac gaatatgctg aaccagagga      4920
     attagaaaga agatcccaga ggaatgtatg cgtcgcatcg acagaagaag cctttatcga      4980
     tcattacgta gccaattttt cgtcgtatac taaaatgatg cgaataacag cgtactggat      5040
     tcgattcttc aatgccttgc ggtcatcgaa gtcgcaaata aagaaaggat tcctcacatc      5100
     tgatgaactg aaacaggcag aaatggttat cgtccgaaag gtacaaggtg gagccttcca      5160
     acaagaaata aaggatctga agaacgtcgg gatcgtgcgc tggttcaatc cgcacatgtc      5220
     ggaggacgat gtattacgag ttggtggaag gctgaatcat tctaatgaac cttatgaagc      5280
     amggcatcct atggttttac cagctcgagg tccgttcacc aagctattag ttcgtcatta      5340
     tcacgaaaaa mttcttcatg ctgcaccwca tctcttactg gcaaccatga gattgaggtt      5400
     ttggcctctt ggwggacgga atttatctag gatggtagtt catcaatgtc ataagtgttt      5460
     tcgagccaaa ccagatgctg taaaacaaca aatgggagat ttaccagcat ccagagttac      5520
     ggtagcacgs ccattttcaa katctggtgt ggactttttc ggtccggttt atctttctgc      5580
     gggacgacga cgctcaccag taaagtccta tgttgcaatt ttcatctgtg tgtcaactaa      5640
     ggctgtgcat atggagattg tctcagattt gtcaacagaa agatttttac aagctctgcg      5700
     aagatttttt gctcgacgtg gtatgtgttc agatatctat tccgataatg ggaaaaattt      5760
     tgtgggagct cgtaaccaga tgaaggacct ttttgctctg ctgcgggata agcgtcacca      5820
     agaaggagtt attcaggagt gctscaaaaa caatatcaac tggcacttca ctccaccata      5880
     cgctccccat tttggcggat tatgggaggc wgcagtccgc tccaccaaat accacctcaa      5940
     aagagktctc ggtgaatcat caackacgtt tgaagacttc aatacacttc ttcatcaggt      6000
     agaagcatgc ctgaattccc ggccaataac agcactttct gacgatccga tggatctgga      6060
     accgcttact ccagcccatt ttttaacagg cggatcgtta catgctctcc ctgaacctga      6120
     ctatggaacg gagaagctta accgactcaa tcaatttcaa ctggtgcaac gtmgactaca      6180
     ggacttctgg gmtcgatggc gcacagagta tctttcgcag ctccagggac gaaccaaaaa      6240
     ttgggaacct ccagttaagg tcgaagttgg aaaacttgtt gtgattgccg atccaaatca      6300
     accacctcta cgmtggaaaa tgggtcgtat ccacgaagtt catccaggtg atgatggaat      6360
     agttcgcgtg gtaaccctga aaactgcatc tggattctts aaacgagcag ttgccagaat      6420
     ttgtttactt ccttcatcag aaggctcatc ctaagaacgt cataatccaa aggagtacag      6480
     caaatcagcg tccaaccagt gcatcgaaag ggaactctct gtttatttac tttcagaagt      6540
     tkggccactt caggggaggc gaaga                                            6565
//
ID   BEL-862_AA-LTR repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-862_AA-I;
KW   BEL-862_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-511
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-511
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2994-2994 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 511 BP; 160 A; 100 C; 118 G; 133 T; 0 other;
     tgtttaggta gcaaataatg aggcgaatcg tacgcagccc atggtttatc aactgtggtc        60
     aattgtcgga tttaaaatga gccaaagcgg gcatcgatat aacactacct actacatggg       120
     ttttctgtgg gatatacatg gagccatcac ataatttcgg agaggaacca ttggggatta       180
     gagaggacta gtcaccaact gatcgttgac ctggacggtc gtaaatccaa taagtgctaa       240
     ctattaagat gaattgttcc tagtttttta agaagaataa atgtgtagtc gtaagaagaa       300
     taaatgtctt gttgtgtagt gataaagtgt cgcgtattga attaccaagg aaaggtggac       360
     tattgtggat aaattacccc aactcaggaa ggaattggca ccccttttgg aacccaagga       420
     tcacaagggt ttccctttca acctacacaa acggcaacta gagttcgttc accccacatc       480
     aacgccagcc agaggaggtt agtccccaac a                                      511
//
ID   BEL-863_AA-I repbase;    DNA;    INV; 6100 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-863_;
KW   BEL-863_AA-I; BEL-863_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6100
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6100
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1021..1953
FT                 /product="BEL-863_AA-I_1p"
FT                 /translation="FETLCTSRVTATGHQLESCIWIWEHYYFLSGKIQNSI
FT                 CLAKLGPIAVYYTTLLSSRVCNMASKPPSLRALKLKLKGIQSSFNDIVLFV
FT                 DSFDEDVSITEVEVRLQKLDELWEGFGNILVEIKSHDEFNESSDDIFEKER
FT                 KEFSDSYYRSKSFLLDKVRGRQCVSVADQSIHPTDSSGQGTVEHVRLPQIK
FT                 LQSFNGNIDEWLSFRDLFISLIHWKVDLPEVEKFHYLKGCLQGEPRNLIDS
FT                 LQITKANYQIAWNTLLNRYNNSKQLKKRQIQSLFKLPCLSKESAADLHVLL
FT                 EGFERVVQTLDQIVQPEET"
FT   CDS           1916..6013
FT                 /product="BEL-863_AA-I_2p"
FT                 /translation="SKLSIRLYSRRKRERDSNLKASGPAKDDSSSSSKEGQ
FT                 SNSSSTQVANMVATEVLVSNTAQECSSQMLLATAVLFVEDDDGNRIPARAL
FT                 LDSGSESNFITERLSQRLKVERKRVDVSVSGIGQAVAQVKQRIVATIQSRI
FT                 SSFSRVLSFLVLPKVTVKLPTTSIQAQGWSVPQGIELADPAFCVSKGVDMV
FT                 LGIEAFFDFFVTGRRISIGEQLPALNESVFGWVVCGGLSNTNQSLKVNCNV
FT                 STSEGLEALIARFWNCEEVESSKNYSPEGARCEDIYTQTVQRSMDGRYIVS
FT                 LPKDEGFATRLGESRDIAFRRLLGTERRLARDADLRVQYVSFMEEYQRLGH
FT                 MKKIDASVHSAVSRCYLPHHPVVKEASTTTKVRVVFDASCKTSSGVSLNDM
FT                 LLVGPVIQEDLRAIILRCRTKQIMIVADVEKMFRQINVFPEDTPLQCILWR
FT                 PSPEEELATFELKTVTYGTRPAPFLATRTLNQLAIDEAERFPQAAKAATED
FT                 TYMDDVITGSDSIEEALVLRQELDEMMKSGGFRLRKWVSNRSEVLEGVEEE
FT                 NLAIHDAAGIDLDPDPSVKTLGITWMPHTDVFRFQFAIPDLEEIEKLTKRR
FT                 ILSIIATLFDPLGLIGAVITTAKLFMQLLWKLQYKDGRKLDWDDPLPSMVG
FT                 EDWRKFHVQLTILNELHVHRCVVLPKSVSVEIHCFSDASEKAYGGCLYVRS
FT                 QDIDGNVAVNLLTSKSRVAPLKCQTIPRLELCGALLMTELYEKVQKSIKFE
FT                 APVFFWTDSTCVLRWIKATPTTWSTFIANRVAKIQNLSERGEWRHVPGVQN
FT                 PADLISRGIPPQEIVQNSIWWHGPSWLALERDRWPKTPNNWNSEEEDEERR
FT                 RTAVVITTSLVKEFNEWYFEQFSSYSDLIRRTAIWLRYMQLLRTPKDQRST
FT                 GFLTTDELRQAEKVLIRRVQNETFPNEWKSLARGEYVSGQSPLRWFHPKIF
FT                 EDNLIRVGGRLKHSQESEETKHPIVLPANHRLTRLLFCHYHERLLHAGPQL
FT                 LLSVVRLRFWPVRGRDLARQTVHKCQKCFRAKPTTIRQLMGDLPLARVTVS
FT                 RPFSRTGVDYFGPVYLRPVPRKAAVKAYVAIFICMCTKAVHMELVSDLSTE
FT                 RFLQALRRFIARRGRCTELYSDNGTNFVGAHNKLQEVSRLLKDKVHQDKVS
FT                 HFCVEEGMHWHFSPPSAPHFGGLWEAAVRSAKHHLLRVLGDNPTTSEDMNT
FT                 LLIQVESCLNSRPITACSEDPSDFEPLTPAHFLIGSSLQSMPEPNYQDVPI
FT                 NRLKQWELVQRKVQDFWVRWRREYLSQLQGRVKRWRPAVEIKIGKLVIIQD
FT                 DKLPPLRWKMGRILDVHPGSDNVVRVVTLKTANGLLTRPVEKICILPSSAD
FT                 IED"
XX
SQ   Sequence 6100 BP; 1673 A; 1329 C; 1497 G; 1601 T; 0 other;
     tatggtcctt cgaaccggat tggccggttt caggaggtgt ttggatccat acagcgctaa        60
     ggagttggcg ttttccatcc acaattggct tcttcaaggg tggcattgtg tagcatctcc       120
     cgccatcaaa ggtagcgtcg caattatcag aacaaaggtt gttctgccat cgttcgttgg       180
     aatacgcttt ggatcggcca tcgcgtcaat taagtcactt tcgggctgga cttcagcgca       240
     aaggattatc tcataggtga gttgatccac tacaaatatg tccagccgaa gctggcgctt       300
     ttcttagtgc taacaccatc ttttcgattt gcctgtaacc gaggaatcgt acgttgaaat       360
     ttgtgcgaca tctatgcgac atctttgcga cctgtatgcg acttctggtt atgatcgacg       420
     acattggctg gacttcaagt ttatgtggta tatcaggatc atcccaattg tttacatttg       480
     gtacgagttg gtcaactccc atcgtcgacg aggaggagtc aacaaggatt gcaccgccct       540
     ctaccaccga tacaagtacc tcggcaaaat catcgcactc gctcccattc gagtaattcg       600
     gaagattcgg gtcaaccatt gacgaagcgt tagacatcaa caatccattc ggcagcatcc       660
     ggagcacgtg ctacgaagag ggaacatcat tctatgcttc tccaggttag tgaagagaat       720
     agtatatgtt agccgaagca aaggcacaga aattacacgt tggtgataaa tcttttcctc       780
     ttcgaccgtg tttgattgtg tgttacccat acctacccat attactgctg agttggttga       840
     ttaaggctgg tattcattag gcgctctgcg tttggaattt tgaatcattt gggtgctgct       900
     gtttgcttgt ccaggtgaga cacaacagta tatggcctgc cgaggccaag gccttttttg       960
     atattacatc ctggtttcct ttcctctgtt cacctttaat cataccacac ggagacgtaa      1020
     tttgagacat tgtgcacaag ccgtgtcact gcaactggtc atcagctgga atcttgcatt      1080
     tggatttggg aacattacta ctttctgtca ggtaaaatac agaatagtat atgcctggcg      1140
     aagctaggac caattgcagt atactacacc actctcctct cttctcgtgt gtgcaacatg      1200
     gcctccaaac cgccttcgct aagggcattg aagttgaagt tgaagggcat ccaatcatcc      1260
     ttcaacgaca tcgtgctgtt tgtggatagt tttgatgagg acgtttcgat caccgaagtg      1320
     gaagtacgat tgcagaaact cgatgagctc tgggaaggtt ttggcaacat tctcgtcgag      1380
     ataaaatccc atgatgaatt caatgaaagc agtgatgaca tcttcgagaa ggagaggaag      1440
     gagtttagtg acagctatta taggtccaaa tcgtttcttt tggacaaggt taggggaagg      1500
     caatgtgtgt cagtagcgga tcaatccatc caccctacgg attcctcagg gcagggaacg      1560
     gtcgagcatg tgcgccttcc acaaattaaa cttcaatcct ttaacggcaa catcgatgaa      1620
     tggctcagct tccgggatct tttcatttca cttatacact ggaaggtaga tctcccggaa      1680
     gttgaaaaat ttcactactt gaaggggtgt cttcagggag agccacggaa tctaatcgat      1740
     tctctgcaaa ttaccaaggc aaactaccaa attgcttgga acacgttgtt aaaccgttat      1800
     aataacagca agcaactgaa gaagcgacaa atacaatcgc tcttcaagtt gccttgcctc      1860
     tcgaaagagt ctgctgccga tttgcatgta cttttggaag gttttgagag ggtagtccaa      1920
     actctcgatc agattgtaca gccggaggaa acgtgaaagg gacagcaacc tgaaggcatc      1980
     gggtcctgca aaggatgata gttcatcgtc ttccaaggaa ggtcagtcga actcgtcttc      2040
     cacacaagtg gccaacatgg tggccactga agttttggta tcgaatacag cacaggaatg      2100
     ttcgtcacaa atgctgttag ctacggcggt tttatttgtc gaggatgatg atggaaaccg      2160
     cattccagct cgtgctcttt tagactctgg atcagagagc aattttatca cggaacggtt      2220
     aagccaacgt ttgaaggtag aacggaaacg agtagatgtg tcagtatctg ggatcgggca      2280
     agcagtcgct caggtaaaac agcgcattgt tgcaacgata caatcgcgaa tctctagctt      2340
     ttcaagagta ttgagctttc tcgtactccc gaaagtaacg gttaagttgc ctacaacctc      2400
     gattcaagct caagggtggt cggtaccaca aggaatcgag ctagcagatc ctgcattctg      2460
     cgtgtccaaa ggtgtggata tggtacttgg tattgaggca ttcttcgatt ttttcgtaac      2520
     tggcagaaga atctcaattg gagaacagct tccggcatta aacgagtcag tttttggatg      2580
     ggtggtttgc ggtggactgt ctaataccaa tcaatcactc aaggtgaact gcaatgtttc      2640
     aacatctgaa gggttagagg cacttattgc caggttttgg aattgcgagg aagtagaatc      2700
     atcaaaaaac tactctccag aaggggcacg ctgtgaggat atatacacgc aaacggttca      2760
     acgtagtatg gatggacgat atattgtttc cttgccgaag gatgaaggtt tcgctacacg      2820
     gctaggcgag tcaagggaca ttgctttccg acgattatta ggcacggaga gaaggttagc      2880
     aagggacgct gaccttagag tgcaatatgt gtcgttcatg gaggagtacc aacgtttggg      2940
     tcacatgaag aaaattgatg ctagcgtaca tagtgctgtt agccgatgtt atcttccaca      3000
     ccatccggtg gtgaaagaag caagcaccac cactaaggtg cgcgtggtct ttgatgcctc      3060
     gtgcaaaaca tcatctggcg tttctttgaa tgatatgctg ctcgtggggc cagtaataca      3120
     agaagatctt cgagcaataa tcttacgttg tcggaccaaa caaattatga ttgtagcgga      3180
     tgttgaaaaa atgttccgcc agattaatgt ttttccggaa gatacgcctc tacagtgtat      3240
     actttggcgt ccatcacctg aagaagaact agcaactttc gagttaaaaa cagttaccta      3300
     tggcactaga cccgcacctt tcctggctac gcgtacgctg aatcaactag cgatagatga      3360
     agcggagcgt tttccccagg cagccaaagc tgccacagaa gacacgtata tggatgacgt      3420
     gataacgggc tcggacagca tcgaagaagc tttggtatta aggcaagaat tggatgaaat      3480
     gatgaagagc ggtggttttc ggctcaggaa gtgggtgtcc aaccgctccg aagttctgga      3540
     gggggtagag gaggaaaatt tggcaataca cgatgcagca gggatcgacc tggacccaga      3600
     tccttctgtg aagaccttgg gaataacatg gatgccccac acagatgtct ttcggttcca      3660
     attcgctatt cctgatttgg aggaaataga aaaactaaca aagcgacgaa tcctgtcgat      3720
     tattgcaacg ttgtttgacc cgttagggtt gatcggagca gtcattacaa ccgccaagct      3780
     gttcatgcag cttttatgga agctacaata caaggatgga cgcaaattgg attgggacga      3840
     cccactacca tcaatggtgg gtgaggattg gcgtaaattc cacgtacagc tgactatact      3900
     aaatgaacta catgttcatc gttgtgttgt tctacccaaa tcagtttctg ttgaaataca      3960
     ctgcttctct gacgcctcgg agaaagccta cggaggatgt ctgtacgttc ggagtcagga      4020
     tatcgatgga aacgtggctg tgaacctctt aacatccaag tcaagagtcg ctcctctcaa      4080
     atgtcagacg attccaagat tggaactttg tggagcactt ttaatgactg agttgtacga      4140
     aaaggtgcag aagtccatta agttcgaggc accagtgttc ttctggaccg attcaacttg      4200
     cgtgctgcgt tggattaaag ctacaccgac cacttggagc acctttattg ctaatagggt      4260
     tgcaaaaatt caaaatctat cagagagagg agaatggaga catgtaccgg gggtacaaaa      4320
     cccagctgac cttatatccc gaggaattcc gccgcaggaa attgttcaaa acagcatatg      4380
     gtggcacgga cccagctggc tggcattgga acgcgatcgt tggcctaaga cacccaataa      4440
     ctggaattct gaggaggaag acgaagagcg acgtcgcaca gcagtggtaa tcacaacttc      4500
     cttggtaaaa gagttcaacg aatggtattt cgaacagttc tcgtcttatt cggatcttat      4560
     tcggcgaaca gcgatttggc ttcgttacat gcaactgtta cgcacaccaa aggatcagcg      4620
     ttctacaggg tttttaacta ctgacgaact gcgacaggca gaaaaggtgt tgattcgtcg      4680
     agtacaaaac gaaacgtttc ccaatgaatg gaagtcactt gcaaggggag aatacgtatc      4740
     cggtcaatcg ccattgcgat ggtttcatcc caagatattc gaggacaatc taatacgagt      4800
     tggtggacga ttgaagcact cgcaggaatc cgaggaaaca aaacacccca ttgtacttcc      4860
     agcaaatcat cgtttgactc gattactttt ctgccactat catgaacgat tactccacgc      4920
     agggcctcaa ctactgctga gtgtcgttcg gcttcgtttt tggccggttc ggggaagaga      4980
     tttggcaaga cagacggtgc ataaatgtca gaaatgtttt cgagcaaaac caactacaat      5040
     acgacagctg atgggcgacc ttccactagc aagggttaca gtatccaggc cattctcaag      5100
     aactggtgtg gattatttcg gaccagttta tttgcgaccc gtcccacgga aagcagccgt      5160
     taaggcgtat gttgccatct tcatttgtat gtgtacaaag gcggtacaca tggagttagt      5220
     ttccgacctt tcaacggaac gatttttaca agcacttcgg agatttattg cgagaagggg      5280
     ccggtgcact gaattgtact ccgataatgg aaccaatttt gtcggagctc acaataagct      5340
     tcaggaggtt tcacgattgc taaaggataa ggtccatcaa gataaggtgt ctcatttttg      5400
     cgttgaagaa ggaatgcact ggcacttcag tcctccaagt gcacctcact tcggcgggct      5460
     ttgggaagca gcagtccgct cagccaaaca tcatcttctg agggtattag gagacaaccc      5520
     aactacctcg gaagacatga ataccttgct tattcaagtt gaaagctgct tgaattcaag      5580
     gccgattaca gcatgctctg aagatccaag tgatttcgaa cctttaactc cagcacactt      5640
     cctcattgga tcctcgctgc agtccatgcc agagccaaat taccaagatg ttcctattaa      5700
     tcgtctgaag caatgggagc ttgtccaacg gaaagtacag gatttctggg taagatggag      5760
     aagagagtac ctttcacaac tacaaggacg cgtgaaacgc tggcgtccag cagttgagat      5820
     aaagatagga aaactggtca taatacagga tgacaagctg ccaccactac gttggaagat      5880
     gggccggatc ctagatgttc atccaggatc tgacaacgtt gtccgagttg tgacattgaa      5940
     aacagcaaat ggtctcttaa cgcggcctgt agagaagatc tgtatattac catcttcagc      6000
     tgatatcgaa gactagcaac ctccctcctg tcctgtccct gtcgaagagg aatcttttct      6060
     tatcatttca gaaatgcacc gatttctggg tgggtgaggg                            6100
//
ID   BEL-863_AA-LTR repbase;    DNA;    INV; 635 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-863_AA-I;
KW   BEL-863_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-635
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-635
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2995-2995 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 635 BP; 179 A; 133 C; 150 G; 173 T; 0 other;
     tgtttgggag cacctgaacc ttcgtcatcc aaactttcat acagtccacg ctgcgtacaa        60
     ctgcttcatg tgcatggcaa acaaacagga gctcgacgtc ggctatgcgt tatcagcatc       120
     tacctaccat atttaacatg tggtggtgag cgagagaaat ggttcgggtt tatctcctgg       180
     atcggatcag tacctttaga tcggtttggg gtcatttacg aaccctaatc atcgcacgat       240
     catcggctac cctgctagct atcgggtcag aagagaaact ctagtgcctg ttgaatcgcc       300
     ggtggaaacg gtccaattga acttacggtc ggttttgttt tattagccta agtagtttta       360
     agtagagcta agaaataaat gttttagtgt aaaatgccgt aataaatgtg tttagcgtaa       420
     tgtgtgtctc tataaccgtc gcgtgtgctt aatacaatga agaaagagat ccagaacgat       480
     tgatgaggaa atcgatctac accacctttt attggggcta aggaactaag cccattgttc       540
     gtagacaaag aaagccaaca agaaatctca tctgcctatg gaggaataag gttggtgaac       600
     cactatcgtg tcggccagag ctatcggacc cgaca                                  635
//
ID   BEL-864_AA-I repbase;    DNA;    INV; 7938 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-864_;
KW   BEL-864_AA-I; BEL-864_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7938
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7938
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(709..1425,1341..5363,5367..6653)
FT                 /product="BEL-864_AA-I_1p"
FT                 /translation="MFAKMTSDLRNLVKRERQLFNSLEGTERFLENYDPIK
FT                 DLKQISIRMQVLDSVYNEFFEVRRNIELLLDTIAVEGESEVKPEAEEEQQK
FT                 KNLAILSNFEDRYFNVKAGLLQLSEKVVTTTNEGSSSHGCFPKVKLPEIKL
FT                 PEFSGNVRDWITFRDSFRSLIDSNNQLSEMDKFSYLRSSLSGEALQEISSV
FT                 EISAANYIVAWQALEARYENKKKIIENGSYSTPWKARNVFWRTTTPLRTKK
FT                 NYRERQLFNSLEGTERFLENYDPIKDLKQISIRMQVLDSVYNEFFEVRRNI
FT                 ELLLDTIAVEGESEVKPEAEEEQQKKNLAILSNFEDRYFNVKAGLLQLSEK
FT                 VVTTTNEGSSSHGCFPKVKLPEIKLPEFSGNVRDWITFRDSFRSLIDSNNQ
FT                 LSEMDKFSYLRSSLSGEALQEISSVEISAANYIVAWQALEARYENKKLIVK
FT                 AHIDALFAVDGIKKESYDGLNRLINEFETNLQMLDKIGEKTAEWSTLLVHM
FT                 ICSRLDSATLRHWETHHNSKNVPTYQNLITFLRNHCAVLQSVAPPKSLQDD
FT                 QRSLKPTVCQAVLKSTGRCPFCNEAWHYAFHCDKFQRMRIAERNEAVTRAR
FT                 LCRNCFNPGHYARTCDRGVCRHCHQKHHSMLHIGEMRSSVPDSLSRAPLQP
FT                 PMQQQQQSNSVRSNQQTRNTNTVTSANSQNTQTHTATEQPTTSQNYVSLPV
FT                 TPTQTILLSTALIKIHDRFGNSMLARALLDSCSQHCLMSKSFSNKLSFREC
FT                 PAHLSVQGIGPSQSVSTKAVTALVEPRSSSVSEFSAEIQFHVLPKLTISLP
FT                 TTAIDPSNWNLPPSMTFADPRFHEPGPIDVIIGAEYYMDLLCDGRQKMTDE
FT                 GPTLQNTVFGWIVSGRIPDSSTHSLISFTHVCSTAEIQDQLTRFWELETCR
FT                 NISTYSTEESACEAIFNKTTVRDPEGRFVVTLPKKEHLISQLGESRSIAIR
FT                 RLIGMERRFTSNLALKEEYSKFMREYEDLGHMEEIVGESLGGKEYYLPHHA
FT                 VFKPDSTTTKLRVVFDASCSTSSGISLNEALMVGPVVQDDIQDISLRFRLH
FT                 RYALVGDIAKMYRMILQTEDDRRFLKIVWRNEPSEPIRTYQLKTVTYGTAS
FT                 APYLATKCLHRLSEEGESVYPVAAKVVRKDFYVDDMLSGTDSIDEGKVLIH
FT                 QMIALLHSAGFTLRKWNSNSNELLKDIPDDLRDNRSVLELESTNATVKTLG
FT                 LMWEPRTDQFKFSSPEWNAPAIITKRSVLSDVSRLFDPLGLVGPVVVQAKI
FT                 FIQDLWRQQCGWDEVLCENLQEQWLQYKRNLAGLDTLAIPRWVGFRRGVAI
FT                 EIHGFCDASNKAYGACIYLRSVSESGEVSVHLLTAKSRVAPLNNVKKAEKH
FT                 ETIPRLELSSALLLAHLYEKVKCALNLDARSFFWTDSMIVKCWLSSSPSRW
FT                 KQFVANRISEIQHITRGGVWSHVAGLENPADIISRGMTPAQLQYEKVWFHG
FT                 PCWLQLEKEHWPNDQRVQEDEIQKNILEEKSVAAVLPSCTFSEIFSWKSSL
FT                 MDLVRIVAYINRFRSNAHRENRCNRVVGALSSQEIDAALKKLVRISQQESF
FT                 PQETADLTKKREVESSKITRLYPEMIDGIICVGGRLRHADLSSSRKHPYII
FT                 DQRHPFAKLIVTYYHHKHFHAGQQLLISALRERFWITSVRSLVRSVLHECV
FT                 PCFRVRPQIQEQLMADLPPERVTPCLPFQRVGVDYCGPFMIKYPQRRGQPI
FT                 KCFVAIYVCLVTKAVHLELAADLSTQGFLTTFKRFVARRGKPQIVMCDNAK
FT                 NFVGARREISELHNLIGSQHFQTSVVQSSAEERIEFKFIPARSPNFGGLWE
FT                 SAVKSFKTLLKRSIGLRILMFDEMQTIIVQIEAVLNSRPLTPLSNDPDDFE
FT                 ALTPGHFLIQRPLTALPEPDLNAVPENRLSTWQRIEQTMQRIWRKWSTQYL
FT                 SDLHNRTKWTKKKDNVAVGTMVVLKEDNLPPLRWPLARVTEVHAGADGNIR
FT                 VVTVRTRDGSYRRAISKICVLPIRENTSTPAEEN"
XX
SQ   Sequence 7938 BP; 2278 A; 1770 C; 1824 G; 2066 T; 0 other;
     cggatccgac ggttaccttt cggacaaaag acaaaaagtg aactatttag tgaaacccgg        60
     ccgacggcaa agtctcgctc cgttcttcct gtggtgccgt atgctgtttc aggctgttgt       120
     ggacattaga agtgccaaat caccctttgg agaacccgtg aaaagcgtgt ccagtgcata       180
     ccgcgacatc actgtggcta tcgtgaagca ttgtatgtgc atcgccattg caaaaccgtt       240
     gctgagccga gaagactgcg ccatcgcgac gtatatgctg cgccatcgtt cttgatcgag       300
     caaccatcgc atggatatca tcacaatcgg gaagtaaatt ttgtgcatga aatggtggca       360
     tgtggctctt cttaaaaggc aaataaattg cgtgaattgc atgcgagttt ctttctttgg       420
     caagtagcat tccttgtgtt cattacgaaa ttggtctagt tggtttcgct ggattacttc       480
     tttgagctgg tatcttcacg gtcggtatcc ctcgctgctg tcacctgttg ggttgcaagt       540
     cctatttatt gctccgcgga gtcaatggaa cgtagagttg atcgggagtg atggtgcaaa       600
     agtgaatttg ttggcagtga tttacatttg aacaggatcg aataggatcg atgctggtca       660
     cagtgctgtg aacgtgtaca atattattag ttgcagtgca tttttgtgat gtttgccaag       720
     atgacgagtg atttgcgtaa cctggtgaaa cgagaacggc agttattcaa ctccctggaa       780
     ggcacggaac gttttttgga gaactacgac cccattaagg acttgaagca aatcagtatt       840
     cgtatgcagg tcttggattc tgtatacaac gagttctttg aagttcggag gaatatcgag       900
     cttcttcttg acactattgc ggtagaaggt gaatcagaag tgaagcctga agcggaagag       960
     gaacagcaga agaagaattt ggctattttg agcaatttcg aggatcgcta tttcaatgtg      1020
     aaggcaggac tcctgcagtt atcggagaag gttgtaacga caacaaatga aggttcttca      1080
     agtcatggat gctttccgaa agtcaaatta ccagaaatta agcttccaga attcagtgga      1140
     aatgttcgtg attggatcac tttccgtgat agcttccgta gcttaatcga cagcaacaac      1200
     cagctttccg agatggacaa attcagttat ttgcgttctt cgctctctgg tgaagcactt      1260
     caggagatca gttcggtgga aatttctgca gcaaattata ttgtggcatg gcaagcacta      1320
     gaagctcgct acgaaaataa aaaaaaaatt atcgagaacg gcagttattc aactccctgg      1380
     aaggcacgga acgttttttg gagaactacg accccattaa ggacttgaag caaatcagta      1440
     ttcgtatgca ggtcttggat tctgtataca acgagttctt tgaagttcgg aggaatatcg      1500
     agcttcttct tgacactatt gcggtagaag gtgaatcaga agtgaagcct gaagcggaag      1560
     aggaacagca gaagaagaat ttggctattt tgagcaattt cgaggatcgc tatttcaatg      1620
     tgaaggcagg actcctgcag ttatcggaga aggttgtaac gacaacaaat gaaggttctt      1680
     caagtcatgg atgctttccg aaagtcaaat taccagaaat taagcttcca gaattcagtg      1740
     gaaatgttcg tgattggatc actttccgtg atagcttccg tagcttaatc gacagcaaca      1800
     accagctttc cgagatggac aaattcagtt atttgcgttc ttcgctctct ggtgaagcac      1860
     ttcaggagat cagttcggtg gaaatttctg cagcaaatta tattgtggca tggcaagcac      1920
     tagaagctcg ctacgaaaat aaaaaactca ttgtgaaggc tcacattgac gctctttttg      1980
     ctgtagacgg aattaagaag gaaagttacg atggtctaaa tcgtcttatt aatgaatttg      2040
     agacaaacct tcaaatgcta gataagattg gtgagaagac agcagaatgg agcactcttc      2100
     tggtgcatat gatatgcagt cgtctggatt cagccacctt gagacactgg gaaactcatc      2160
     ataactcgaa gaacgttccg acctatcaaa accttataac ttttcttcgc aaccattgtg      2220
     cggtgctcca atcagtcgct ccaccgaaat ctcttcaaga cgatcagcga tcgctgaagc      2280
     cgacagtctg ccaagcggtt ctcaagtcta caggcagatg tcctttctgc aatgaagcat      2340
     ggcattatgc atttcactgt gacaaattcc aaaggatgag gattgctgaa cgcaacgaag      2400
     ctgttactcg agcaagacta tgtcggaatt gcttcaaccc tgggcattac gctaggacat      2460
     gtgatcgagg ggtatgtcgt cactgccatc aaaagcacca ctccatgctg catattggag      2520
     aaatgcgatc ctccgttcca gactcgctgt caagagcacc tttgcaaccc ccaatgcagc      2580
     aacaacaaca atctaactca gtgcgatcca accaacagac acggaacacc aacacagtta      2640
     cctctgccaa ctcgcaaaac acgcaaacac atacagccac tgaacaaccc acaacaagcc      2700
     agaattacgt ttcattaccc gtcactccca cacaaaccat acttctatca acggcgctta      2760
     tcaaaattca tgatcgattt gggaattcaa tgttagcacg agctttgttg gattcttgct      2820
     cacaacactg cttaatgtca aaaagttttt cgaacaagct gagcttcaga gaatgcccgg      2880
     cacatctgtc ggttcaagga atcggaccat ctcagtcggt gtccacgaag gcggttacag      2940
     cgttggtgga acccagatcc agttctgtat ctgagttctc ggcagaaata cagttccacg      3000
     tcttaccaaa gctgacaata tcgttaccga ctacggccat cgacccatca aactggaatt      3060
     tgccgccatc gatgacattt gcagatccgc gtttccacga acctggtcca atcgacgtga      3120
     tcatcggagc agaatattat atggacctac tttgcgacgg aagacagaag atgacagatg      3180
     aaggccctac gctccaaaat acagtctttg gatggatagt ttctggtcga atcccagata      3240
     gttcgacgca cagtttgatt tcatttactc acgtctgttc cacggctgaa atccaagacc      3300
     agctaacaag gttttgggag ctggagacct gtagaaatat cagcacttat tctacggaag      3360
     aatctgcttg tgaagcgatc ttcaacaaaa ctacagttcg ggacccggaa ggccgcttcg      3420
     ttgttactct cccaaagaag gaacatctca ttagccagct gggcgagtca aggtcaatag      3480
     caattcgacg tctcattggg atggaacgac gcttcacttc aaatttagcg ttgaaggaag      3540
     aatactcaaa attcatgcgg gaatatgaag atctgggaca catggaggag attgtaggtg      3600
     aatcacttgg aggaaaagag tactatttgc cacatcacgc ggtcttcaaa cctgacagca      3660
     ccactactaa gctgcgagta gtgtttgatg cttcctgcag tacttcgagt ggaatttcac      3720
     ttaacgaagc tttgatggta ggaccggttg tacaggatga tattcaggac atctctctac      3780
     gattccgttt acatcgttat gctctcgtag gtgatattgc aaaaatgtac cggatgattt      3840
     tgcaaacgga agatgaccgc cgtttcctga agatcgtgtg gagaaatgaa cccagtgaac      3900
     caatccgtac ctatcaatta aaaacggtca catatggtac agcttctgct ccttacctgg      3960
     ccactaaatg cttgcatcgt ctatcagagg aaggagaatc agtataccct gtagctgcca      4020
     aggtggttag aaaggatttt tacgtggacg acatgttatc aggcactgac agtatcgatg      4080
     aaggaaaggt attaatccac caaatgatag cgctacttca ttcggctgga tttacgcttc      4140
     ggaaatggaa ttccaattca aacgagcttt tgaaggacat accagacgat ttgagagaca      4200
     atcgatcggt tttggaacta gaatctacga acgcaaccgt gaaaactctt ggtctcatgt      4260
     gggagccccg aaccgatcag ttcaaattta gtagtcccga atggaatgca ccggctatca      4320
     ttaccaagcg atccgtgtta tcggatgtct cccgattatt tgatccactt ggcctagtag      4380
     gccctgtagt tgtgcaagca aaaattttca tccaagattt gtggaggcag cagtgtggat      4440
     gggatgaagt gctttgcgaa aatttacaag agcagtggct acaatacaag agaaatctag      4500
     ccggactcga taccctagca attcctcgat gggtcggctt ccgcagaggt gtcgcaattg      4560
     aaatccatgg attctgtgac gcttctaaca aagcgtatgg tgcttgcatc tatctgcgat      4620
     ctgtttcaga gtctggtgaa gtttctgtcc acctattgac agccaaatct cgagtagctc      4680
     ctctaaataa tgtaaaaaag gctgaaaaac atgaaactat tcctcgactg gaattgtctt      4740
     ctgcactttt gctagcgcat ttgtacgaaa aggtcaaatg tgctctgaat ctggatgcac      4800
     gatctttttt ttggacggat tctatgatag tgaagtgctg gctttcatcg tcaccatccc      4860
     gatggaaaca gttcgtcgcc aaccgaatct cggagataca gcacatcacg agggggggag      4920
     tttggagtca tgttgccgga ctagagaatc cagcagatat catctctcgc gggatgactc      4980
     ctgcgcagct acagtatgag aaggtttggt ttcacggtcc atgttggctg cagttagaaa      5040
     aagaacattg gcctaatgat caacgtgtgc aggaggacga aattcaaaag aatattttgg      5100
     aggaaaaaag cgtagcagcg gtactaccct catgtacatt cagtgaaatc ttcagctgga      5160
     aatcttctct gatggacctc gtcaggattg tcgcttacat taaccgattt cgctcaaacg      5220
     cacaccgaga aaaccgatgt aaccgggtag ttggtgctct ttcgtcacag gagattgacg      5280
     ctgcgttgaa gaaattagta cgcatttctc agcaagagag tttcccgcag gaaacagcgg      5340
     atctaactaa aaaacgagaa gtatgagaat cgtcaaagat tactagattg tatccagaga      5400
     tgattgatgg cataatttgc gtgggcggtc ggcttcgaca cgccgattta tcatctagtc      5460
     gcaagcatcc ttacataatt gaccagcgcc acccttttgc caagctcatt gtaacatatt      5520
     accaccacaa gcattttcat gcaggacagc aattgttgat ttctgcactt agagagcgat      5580
     tttggatcac tagcgtccgg agtctagtcc ggtctgtgct acatgaatgt gttccatgtt      5640
     ttcgagtacg cccgcaaatt caagagcagt tgatggcaga cctacctccc gaacgtgtaa      5700
     ctccttgtct cccctttcag cgagttggag ttgattattg cggaccgttc atgatcaaat      5760
     atccgcaacg tcgagggcag ccaatcaaat gctttgttgc aatttatgtt tgtctggtta      5820
     caaaggccgt tcaccttgag ctagcagcgg atctttcaac tcaaggattc ttaacaacgt      5880
     tcaagcgttt tgtggctcgt cgaggaaaac cacagatcgt tatgtgcgat aacgccaaga      5940
     atttcgttgg tgcgagacga gaaatttccg aattgcataa tcttattgga tcccagcatt      6000
     ttcaaacttc cgtagtccag agctcagctg aagaacggat tgaattcaaa ttcattccgg      6060
     cacgatcacc aaactttgga ggtctgtggg aatctgcagt aaagtccttc aagacactac      6120
     ttaagcggag tattggtctt cggattctca tgttcgacga aatgcagaca attatcgtac      6180
     aaatcgaagc agttttgaac tcgagaccat tgacacctct tagcaacgat ccagacgatt      6240
     tcgaggcgct gacacccgga catttcctga ttcagcgacc tctgactgcc cttccggaac      6300
     ctgatctgaa tgctgttcca gagaatcgac tgtcgacatg gcaacgtatt gagcaaacta      6360
     tgcaacgtat ttggcggaaa tggtctaccc aatatctgtc agacctgcac aatcgtacga      6420
     agtggacaaa aaagaaggac aacgttgcgg ttggaacaat ggttgttcta aaagaggaca      6480
     accttccacc actcagatgg ccgttggcac gcgttaccga agttcatgca ggtgcggatg      6540
     gaaatattcg cgtcgtgaca gtacgaacaa gagacggtag ctatcggaga gcaatttcaa      6600
     aaatatgcgt tctaccgatt cgagaaaaca cttcaacacc ggctgaagag aactaggact      6660
     cctacagcgg cggaggccca ctggcctccg cacaccatca tgatccgccc atgaaccctg      6720
     ctcggatggt ttacatcaag tcctttcaga accttcgagg taatatgtgt tgtccggtga      6780
     tggtttcatg tcgcatgtgt atgcatttat atgtcagaac atgtccggtt ttcctggaaa      6840
     ctagagcggc acgtagcgct tggtccactt ggtattatct gttagaaacc tagctaagcg      6900
     aaatcccgtt tcgaatattc cgaggtactc tacaaaaata gcactctgag gaggaagata      6960
     cgcaatcaac ccaaacgcaa cgtagtagtc gtcaattcca tttgaacgtc agcacgcccc      7020
     attgcaccga ggcgtttgcg gaggccacga gggcctccgt tccagggaat gaaaaccatc      7080
     acctagcgat ctttgtcagt caagccacag acgcaaaact ccaattcaat ccgttccggc      7140
     agtccggtag tgaaatcgta cattttcaaa tcaccagtcc atccggcgag acagctaaaa      7200
     tcatcgccag atatacaggg gagcaaaaag tcagacaatc caaccttaat catgcttctc      7260
     cattacgatc gtctatcgtg aagaatccaa tccagttggg atgaaagcac caaaccaagt      7320
     atgcgaacac actggcagac taatttacgg aataattcac cttctagcag tcctaaaggg      7380
     tctgccaggt aagttgttcc agtttttact gcatgctttc atgatactac ataatcatat      7440
     ccaatcgcct tgaggaacat cgaacatgat aatcaactgc atcataaatc aacacttgaa      7500
     aacggctatc atcatcaagt tcgtcgtaat cgtcgtcatc gttgatgtgg agatcgtgta      7560
     tcctgtgaaa ggtcctggca gactacataa ctattgtaac atttcgaagc agccaaaaat      7620
     ggtctgccag gaaaacatca tctatcacga agccaacaac aatgaaccag ctaagtccag      7680
     atgcccacag cgatgtctac taccaaacca ctatgaggct tctaagtgtg tcaacaatct      7740
     cagcattgta tatggatcaa ggccgttcca gcatcagccg accagcagtg tatcgacttc      7800
     atcaaccatc gaacaatagt tgctattttt aatatcagtg tttagtatat aagatagaag      7860
     tagggaatca aaacaaaaag gtcaattagg tatatgtaag ggtagttgaa atgagggtat      7920
     ttcaaggcgg ccggcaaa                                                    7938
//
ID   BEL-864_AA-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-864_AA-I;
KW   BEL-864_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-420
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-420
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2996-2996 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 420 BP; 114 A; 88 C; 85 G; 133 T; 0 other;
     tggtatagca acaaaccagt agcagacaca gaccaatcaa ttagaatcgt aaacgatcag        60
     acaagttcca caagtgtagc acgtagagcg gtctcgcttc attgcatgtg tctggtcagt       120
     ccatctcata ttgtgtatat ttatgtgctt tattactgtg tgtgaatagt ccttttccct       180
     gatcgcttcc cgatcggtat gccagccatt ctgttgccca tgtacgatta gagagaagat       240
     cagaatatac ctaaccgtcg cgagattcac atcgccgcgt tcgtttgttt gaaaaattaa       300
     agtttgtgtt cgcgtcataa taaatgtagt ttgtcatccg tctaaaataa attgtagtgt       360
     ttcttgtaat ttcgcgattt tcttaaatac tgtccgaaag accggtttca cgcgcgaaca       420
//
ID   BEL-866_AA-I repbase;    DNA;    INV; 1471 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-866_;
KW   BEL-866_AA-I; BEL-866_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1471
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1471
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2976-2976 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >98% similar to each other.
XX
SQ   Sequence 1471 BP; 503 A; 295 C; 337 G; 334 T; 2 other;
     tttttggtcc ttcgaaccgg atattcgttg tgtcgtgaag ccatgttgta tattatccgt        60
     cctggattat tgaactgtgt attgggagtt gcggtatctg atgaaaatgt gatgaaatct       120
     gcggaaaatt ttcgtgacat gacacactcc aacgcaccaa actacgtgaa ttcactgcat       180
     acaaactgaa aggcgactgt gaaaagaatt ctgtgaacca aaacgcatac acaatggact       240
     ggctagtagc agcaaatcaa aggagatcga agattgacat taaaattgtc atttccatca       300
     atgcaatagt tgggcttatc tagataaact ttatccgaag aaatgaacag tgagatgcga       360
     gagagtgaag cgtctcataa agttaaaaca atcatcgagt caatatgata tatcatgaag       420
     tcaattgtca gtatgacctc cgtgtgatag agggattatc agcctgtcgt gaatatcaac       480
     acaatccaag tcgtttcccg ctcacccaaa ttctgaggaa acgaaaaatg aaaacttaaa       540
     tcaacaatgc agtagaccac tgagttttgc tggaacatgg attcaggaac aatcaacagc       600
     gcaaggctgg agattttcat catagtaggt ccacagtcca gtgaggaata cactggagct       660
     gtgatggata gttcctgatt catacatttc atattcacca gcgcaaggct ggtgaaaatc       720
     agcagtctag cggacacaag ccgttggaac cgtgacgaag actcagcaga caataaatta       780
     gttcaccaga gctacggacc cttcattcag ttcagtgaag catttcgagg atgtcgtagc       840
     atcagcaaca acacaccagc agctcaatag aattttatgt atcgctaata cacagaagag       900
     gaacaatcaa cagcgcaagg ctggagattt tcgtcatagt agatccacag tccagtgacc       960
     aatgcactgg agctgtgacg aatcgttcat cattctgata gttaccattc ttcagcacaa      1020
     ggctgaagaa accgtcatgg ggaagctcag cagtccagcg actacagttc gttggaacca      1080
     tgactcgacc aaaccagaca ggaacttcaa cgaaggcaag cagacccaca gcaacagctc      1140
     gacaacgttc aacaacttta ggaaggattc agcattctga ggaaggatca gtgtttgtta      1200
     agctagtgaa gaggaagata acggaactga gaaacgaacc tatcgwcctg aagaacgata      1260
     acatcaatac tggcgaagca tagacgaggc gaggcaaatc aaaagggata agatagcata      1320
     agacgcaagg agtgatcaac gtagaakagg agctaatcta ctcgtaccat ttagcgcaaa      1380
     caacggtaga acaaattgta aatgagtaca tgtaaacgaa gaaagttatt ggaagattgt      1440
     cgaaaggcaa ggcctatcaa gggaggcggt a                                     1471
//
ID   BEL-866_AA-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-866_AA-I;
KW   BEL-866_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-420
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-420
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2997-2997 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 420 BP; 134 A; 80 C; 75 G; 131 T; 0 other;
     tgttgatgcc aattatcact tagatcagtc caaattgaaa gatcgactgg cttttcgagc        60
     agtcaagtag aaaaaataga ttctaataag atcaggtaaa agtatacgac gattaatagc       120
     catttttaaa gaacttcggg ataaactcgg gtttcccgct caaatagcat tattctgcag       180
     actataaaag cccaagaagt tttctaaatg aattatagtt cgcaaattgc tgttcgttcc       240
     atataaagtt attgttacat acctttgaca ataaaatgag tgtttcgtgt attgtgtatg       300
     gacctagttt tcagtcagtt ctcccgtaaa gacaatccct agtatcgtgt atccaacttg       360
     tccagcagtt atgatcattt cacggcacca gtcccacata cgcttgaatg tgcgataaca       420
//
ID   BEL-867_AA-I repbase;    DNA;    INV; 5931 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-867_;
KW   BEL-867_AA-I; BEL-867_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5931
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5931
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2977-2977 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >98% similar to each other.
XX
SQ   Sequence 5931 BP; 1595 A; 1424 C; 1555 G; 1353 T; 4 other;
     aaatcttcaa gaaatttgtg gtatttcaac aaggatggat gatcgtactt cccttacgac        60
     ccctcgtaac tgccagtcct gcgaacggcc tgatacggca gaaggtgaaa tggtccagtg       120
     ttgtgtctgt agactatggg agcattttgg atgcgctgga gtaggaatag aggtgaagca       180
     gcacaacatc aggtatgtct gtgagaaatg ttctgtcaag cagggaacat caggcggaag       240
     tgtccttcaa ttaccaactg atgatcggcg taaagcgaaa ggatcgaagg ctagctctaa       300
     ggcggtctcg aaaaggggaa aagctaatgt tgatccacct aagagcgtca gttccagtgt       360
     tcgcgcaaaa ttgttagaag aggagttaaa gctggtagaa gaagagcaac ggctgatgga       420
     actggagctt caggaacagg aggaaatcaa aaagcggcaa ttggttgaag aagagcgtaa       480
     actacaggag aaacgacgtc tcgcggagga ggaaaacaat atccaggaac gaaaactgca       540
     ggaggaactt gaaatgaagc ggaagcagat gaaaattcgg aaggaatcct tggaaaagcg       600
     gcaggcaatc atccggcagg cagcatccat gggcagcaga agtggttcga ttcaggattc       660
     ggaagaaaag gtgaacaagt ggctggattc gcagaggaac gctggaagat tcgtaggttc       720
     tccgaagggc gacgacaacg atgacaaaca atctgtcgat catgacccac tggatgcggc       780
     cgtggaccca gcatttcaat atcccgatct cggtgcactt tcagtcgaac caaaccctgt       840
     gcgtcgctca agtttgccat ctcaagtcgg tcaaagggcc tatcacagcc cggtgcttgt       900
     acgtccgtcg cctccaacgc tcactcaagt acaaatcgcc gcgcgacagg ttctgggaaa       960
     ggaccttcct acgttcggag ggaacccaga agactggcca atctttatca gcaacttcga      1020
     acagtctaca gctacatgtg gatattcaga agcggaaaat ctggtacgac ttcaacgttg      1080
     tttgaaggga aacgcgctgg aatcggtacg tagccgacta ctcttgcccg ccagtgtgcc      1140
     gcacgtcatg aagaccctgc gtacgctcta cggaagacca gagctcctca ttcgatcgct      1200
     gatgacgaaa attcgccagg ttccagctcc tcggcatgac cgtttggaaa cgttaataca      1260
     cttcggtctt tcggtgcaaa atctggtcga tcacctcaag gcagcaagcc agctaagtca      1320
     tcttacgaac ccggctttga tgcaggaact tgttgagaaa ctgcctggat ccatgcgact      1380
     ggactgggca atctacaaaa acagaaacca gccagtgacc ctcgaaacgt tcggggactt      1440
     catggccggg ctagtaacag cggcgagtga ggtgtctttc gaacttcccg gagaaagttc      1500
     cacaacgaaa aatgacaaac gaaaattcag ggaaactggc aacgtttatg cacattctgg      1560
     tgaacgaaca tctccttcag cgaccggagg atctaccttg gcaacaaatt ctctggcaac      1620
     gaacagtgga tcggcttctc ctgctactct gaagatttct aagccgtgcg cagcttgtgg      1680
     tcggagtgga catcgggtag cagaatgtca tcagttcaaa ggtgcgactg tggacgaacg      1740
     ctggaagctt gtccagctaa agggactgtg tcgaacgtgt ctaaatagcc acgggaaatg      1800
     gccgtgtcgt tcctggagtg gatgtggcat cgaaggatgt agacaaaagc ataatactct      1860
     tctacacacc tcttctctct ctctccgggg aacgtaggaa tgtcagcgag ccacgtgatg      1920
     tcggaagatt tgaagtggcc actttttcga attgttcccg tcgttctctt cagcgacagt      1980
     tcctctcaac tcatattcgc gtttatagat gagggatctt cttacactct actagaagaa      2040
     tcagttgcga agcagcttgg agtcagaggt cagctagagc cacttacact ccaatggacc      2100
     ggaaacgtaa agcggaaaga agagaaatca caccgtgtcc aggttgaaat cgctggcaag      2160
     ggttgcacca accgacacaa gttagtagat gcccgtacgg ttagtcaact cgtgttacct      2220
     tcacaatctc tcaaatacgg ggaactagca gatcggtttc ctcaccttcg tggtctacct      2280
     ctggaagact acgaactcgt ccaacctaag ctattgatag ggctggataa tcttagactg      2340
     tgcgttccgc tgaagctgcg agaaggagga ccgagggatc caatcggggc aaaatgcaga      2400
     ctagggtgga gcatttacgg ctgcataccc ggtcattcgt ctcaaactgc aatagtaagt      2460
     ttccatgtcg gaacggtatc tgatccggat cgggagttga acgaacagtt tcgtgactac      2520
     ttcactctgg agattgcaga cgtttcgggt ccacskgtga ccctagagtc ggaagaagat      2580
     aagcgcgcca gacagttact aatggacaca acacgtcgaa tgtccgctgg aaattgttac      2640
     gaaaccggac tgctttggag agcagacaat cctaggtttc cggatagtta tcccatggct      2700
     gttcggcggt tagaagcgtt agaacgcaag ctgcgaaagg agccagaatt agagcgacga      2760
     gtacatgagc agatcctgga atatgaacgc aaaggatacg cccatagagc aagtctgaca      2820
     gaacttacct ctgtagcagc tgaccaagtg tggtatctcc cgctaggtgt tgtaacaaac      2880
     cccagaaaac ccgggaaaat acggctaatc tgggatgcag cagctaaagt aaaccacgtt      2940
     tccttcaact ccaaactact caaggggccg gacttgttgt ctcctcttcc acaagttctt      3000
     cgtcagtttc gccagttccc agtcgcggtg tgtggagata ttatggaaat gttccatcag      3060
     ataaaaatcc gcgcacccga ccgccaatct caacgatttc tgttccgtga aaacccgtta      3120
     gatccaccca aggtgtacgt gatggacgtc gccacatttg gttcgacttg ttctccagca      3180
     tccgcacagt atatcaagaa tctaaacgcg gaggagctct ccaacgaata tcctcgagca      3240
     gcagcagcca ttaaaaacaa gcactacgtg gatgactacc tggacagttt taagacggtc      3300
     caggaggcaa tagagatagt caacgaggtc aagctggttc actccatggc tggtttcacg      3360
     ctgcgtcact tcctgtccaa cgaagcagat gttctcgagg gaatcggtga aacatgtgaa      3420
     gttgaactga agaatctgga cctggagcga ggagaaaagt tggagtcagt gcttggcatg      3480
     aagtggatcc catccgaaga tgttttcgtg tacacgttcg gtatcagaga agatatgcag      3540
     tccatactcg ccgaagatca tattcccaca aaacgagaga tcgccagggt tgtgatgagc      3600
     ttgttcgacc ccctcgggtt catcgctttc ttcatcgtac acggaaagat actactgcaa      3660
     gacatttggg ctaaaggaac ggattgggat caacagatac ctggggacat caatgagcgg      3720
     tggcgccagt ggtcaaaact cttcgagcag ttaaacgaaa ttcgtattcc gcggtgctac      3780
     ttccgttcac cttttcccgc awgcctggac ggacttcaag ttcacctgtt cgtcgacgcc      3840
     agcgagtcag catacgcctg cgcagtatat tttcgtttgg acacagacgg tgacacacag      3900
     gtgatgcttg tcggcgccaa gaccaaagtt gctccgttga aaacgctttc gattcccaga      3960
     cttgagctga aagctgccgt tctcggagtt cgtctactgg agactatcgt gattcaacat      4020
     gagttcccga tctgccgtcg tttttgctgg agtgattctg gtacagtgct tgcgtggatt      4080
     cgctcccatg accacaggcg tttccacaaa tttgtcgctg tccgtgttgg cgaaatcctc      4140
     acgtctaccg agccatcgga atggaggtgg gtcccaacga aactcaacgt cgccgactta      4200
     gccactaagt ggggaacgag tccacagtta accatggaga acccttggtt tcgggggccg      4260
     agctttatcc atgactcgga agagagctgg ccgcaacaaa gttctgttac ttcaacagtc      4320
     gaagaactwc gaccagcaca ttttcacttc gctcatttcg atcctattgt ggacttcact      4380
     cggttcagca gttggaccaa actgcatcgt tcatcagcat acgtgctgcg ttttctcggc      4440
     aacattcgcc gaaaaaagca aggccttaaa ctgcagctcg gcgttctaga cagtggtgaa      4500
     ctacaacgag ccgaggaaat gctatggaag gtagcccagg tcatggctta tcccgatgaa      4560
     atcaacgttc tagcaaagtc tcaaggtccg cctaatcgtc gtcacttcgt ggtggagaag      4620
     tccagcgata tctactcaaa atggcctttc atggatgaca gaggaatcct gcgtagtcgg      4680
     ggtcgaattg attcagcgcc ctatgtatcg atggacgcaa aatttccagt aattctcccc      4740
     aaacagcatg cgatcacttc cctaatcgtc gactggtttc accgacgttt ccgacatgcc      4800
     aaccgagaaa ctgtcgttaa cgaaattcgc caacgtttcg acatcccgac tctgagaaga      4860
     ttggtggata aagttacaaa aaactgcatg gtgtgccgca tcgccaaggc tgctccaaaa      4920
     ccaccagcga tggctccgct tcctgagatg cgtctggctg cattcagtca acctttcacg      4980
     ttcactggat tggactactt cggaccagtg ctggttaagg taggccgaag caacgtcaag      5040
     cgatgggtgg ctctcttcac ctgcctgacg acccgagcga tccacctgga agtggtacat      5100
     tccttaagta cggagtcatg tataatggct gtccagcgct ttgtctctcg ccgtggtatg      5160
     ccgagggaat tctggacaga caatgccact tgcttccaag gaacaagcaa tgcgttgaac      5220
     acacttaacg aagctacaaa gaaagccatg gctgaaaaat ttaccacagc gcagacagct      5280
     tggaagttta ttccaccctc tacaccgcac atgggtggag cgtgggaaag acttgtgcgc      5340
     tctgtcaagg tggcaatagg agcgataatg gatggaccac gtagaccgga cgacgaaacg      5400
     ttggaaacga ttttgctcga ggcggaggca atgattaact caagacctct gacttacgta      5460
     ccactagagt cggcagatca agaagccctg acgcccaacc attttttgtt gggaaattcg      5520
     tccggtttga aatttctgcc tacggagaca ttggacacac gctcgatcct tcgtagtagc      5580
     tggaagctag ccaggtacat caccagtgaa ttctggaagc gatggctgaa ggaatatctg      5640
     ccggttatca cgcgtaggtg taagtggttc caagatacca aggatatcaa aacaggagac      5700
     ttagttctag tggtagatgg gaaggcaaag caccagtgga gtcgaggaag ggttgagcag      5760
     gttattcccg gacgagatgg tagaatacgg caggcactag tgcgaacgtc gacaggggtc      5820
     atccgtagag cagcagttaa gctagctgtt ctagatgtcg tggagcagcg taaccctgtt      5880
     tctggtgttc aagatgttct agatccccag gagggattac gggtgggggt a               5931
//
ID   BEL-867_AA-LTR repbase;    DNA;    INV; 531 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.10, Created)
DT   14-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-867_AA-I;
KW   BEL-867_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-531
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-531
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2998-2998 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 531 BP; 185 A; 96 C; 101 G; 147 T; 2 other;
     tgtgccgaca agacccctcg ttcgagcagc cctgatcatc gcaacactgt cttcatcgct        60
     gacagtgtga agagtaaggg agaatgacgt ttttggagaa atgtcaggcg acagattacg       120
     ggaaaactgc tttgtcatct aaaagtgcta caagtgaatt catacgacta tcaaaacata       180
     aaattttaca aaattattgt ttaataaaat agggatttgt tggaattagt tgagctagaa       240
     attaccgcag acaagactgt aagtgaatta attatacaaa ctttatwatg aascaaatta       300
     ccatgaattg tatcattagg ctgaaatcgg actgaacaat tgagctctag agggataata       360
     cgacccaaaa ttgtagtttt gaggcaaagg tcaccaaatt tgtaagtgtt cccaatccat       420
     attactacca aactaagccg aataataata aataaccgta tattttagct tgaagctaac       480
     ctaccaaaga atcgagtttg ctgtcttgag ttggtgtcac ctaaccccac a                531
//
ID   BEL-868_AA-I repbase;    DNA;    INV; 5586 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 25.10, Created)
DT   17-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-868_;
KW   BEL-868_AA-I; BEL-868_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5586
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5586
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1534
FT                 /product="BEL-868_AA-I_1p"
FT                 /translation="MSNEHPPPPPPASSRQNIGNEVRQEENEQDLLPSLPQ
FT                 SPEHSGEFRGFEEWEIATDAGTAKKISVLARQRSEVQRKLLRLNSTIRQGR
FT                 SFGLAQLNMMMNKLSTAYSEFIGVHNQILCLVPDEAVPEQQRTSDAFEDLH
FT                 DYLSTSVEDLILRMKQANNAPSATPQVIIQQQPLKAPIPTFDGNYESWPKF
FT                 KAVFQDLMANSADTNAIKLYHLDKALVGAAAGVLDESIISQGDYDQAWNVL
FT                 QDRYENLRVIVESHIRGLLNLKKMTVESHRELRRLLDESTRHVESLRYLKQ
FT                 DLSGISEHIIVYVITNALDKSTRKAWESTQKRGELPRYNATINFLKNRCQI
FT                 LENCEPATPTMTVTTQPYKPKSTLPLSKIPAQKSNAATTNAASTFMESCEF
FT                 CSGAHLNFQCPTIKNIPVSQKLEKVRTASMCFNCLRRGHRSSNCPSNNSCR
FT                 KCQKRHHTILHEDNM"
FT   CDS           1538..5566
FT                 /product="BEL-868_AA-I_2p"
FT                 /translation="ESSQNEQPITMCSTPETGKNPDDNLVQEPPVSTTCSF
FT                 SYGQSTKNVLLLTAVVDVIDRNNQHHNCRVLLDSGSQVNFVTEEMANVLGF
FT                 PKQPANVSITGINALKTIAREKTFVKLRSKHENFIANIECLITPRVTGTVP
FT                 TTKLDITRLPIPNNIQLADPTFHVPGKIDLLVGAELFLDLLKPGQHVIAEN
FT                 HLQLKDTHLGWVVAGSVNPHHPFEEVAQLSNLASINVVENIVRKFWEIEEL
FT                 SDASPLTVEEQSCETHFKSTTKRDLDGRFIVNLPLKDNYAELDDCRALALK
FT                 RFLMLEKRLARDPELRLQYADFIREYEALGHCHEVHEADDTPNRTVHYMPH
FT                 HAVLRPSSSSTKCRVVFDASAKSSSKPSLNDVLKIGPTVQRDLFSIMLGFR
FT                 SHVIAFSADITKMYRQILVAPEDTCFQRIFWREQPSDRLRTLELNTVTYGT
FT                 ASAPYQATRCLMQLAEEESPSFPIGSRIIKEDCYVDDVLSGANTVEEAIEC
FT                 QRQLKEMLAKGCFPIHKWGSNSAEFLETIPPEEREKQLSLQEYGANEAIKV
FT                 LGLLWDPNSDHLLIAHQYNRISGKDLPPTKRTIYSQIARLFDPIGLFSPFI
FT                 VVGKLLMQQLWKTSTGWDDVVNEQLQQQWSTFVKALPQLNLIKVPRCIQLP
FT                 EAVAYELHGFADSSAVAYGACLYIRSIFSDGSATVRLLTSKSKVAPLHELS
FT                 IPRKELCAALLLARLLDKVFPALSISMQDTVLWCDSTIVLAWMKKPLDRLH
FT                 VFVRNRVAEIQNLTSEYKWCYVRSECNPADVVSRGQLPDELTTNNLWWNGP
FT                 EYLNTKHYEVDEPEEIPEQSLPEMKQIIVMSAVELEPLPLFSKYSSFRKLQ
FT                 RIVAYILRFANNCRKKNRSERIASPQPTIAELQCSTLAIFKMVQQVHFMDE
FT                 IQRLRSNKPCKRLGNLRPYMENGLLRVGGRLSNSQLPYPSKHPIILPCKDL
FT                 VVKMFISTMHNELLHPSQAVLINFIRQRYWLLNARSTVRQVTRKCVKCFRV
FT                 NPPESVQLMGNLPRPRIVPSPPFAITGVDYAGPFLVRQGSYRPKLVKAYVA
FT                 VYVCMTTKALHLEIVSDLTSEAFLASLRRFISRRGLVQQLHSDNATNFKGA
FT                 NHELHQLYRLFMDQPTLDQIREYCETREIDWQFIPPDAPEFGGLWESAVKS
FT                 TKTHLKKILGNASLTFEEFSTVLTEIEAVLNSRPLFSISTDPDDPLVITPA
FT                 HYLIGRPLIAPAEPSLENVKVSRLSRWQHLQLMREHFWRAWSKDYLHSLQP
FT                 RKKNRMMMPNLRPGMVVLVHDKALPPLKWKMGRITTVYPDKEGLVRVIDVF
FT                 VDGSIFRRSITKVSVLPIEDNKLQEPNNLAT"
XX
SQ   Sequence 5586 BP; 1634 A; 1322 C; 1244 G; 1386 T; 0 other;
     atttggtcca aacgaaccgg acgcagcgac cgttggatca gcgaagctgc agtaaaagtg        60
     tgcaaacaag tcgcaacagg aatcgcatac agtgaagagt ttttcgaact agcgtcacaa       120
     cgagcgcaag ttagaagtga acagtgagtg aattatgtcg aatgaacacc ctccaccgcc       180
     gccgccggcg tcatcgcggc aaaacattgg aaatgaagtg cgacaagaag aaaatgaaca       240
     ggatttgctc ccatcgttac cgcagtcccc tgaacacagt ggtgaattcc gtggatttga       300
     agagtgggag atcgctacgg atgccggcac cgcgaagaaa ataagtgtac ttgccaggca       360
     acgttcagaa gtgcaacgta agttgttgcg gctcaacagt acgattcgac agggaaggag       420
     ttttggatta gcccaattga acatgatgat gaacaaactt tcaactgcat attcggagtt       480
     catcggcgtc cacaatcaaa ttttgtgtct cgttccggat gaagccgtac cagaacagca       540
     acgcacgtcc gatgcatttg aggatctaca tgattacctc agcacatctg ttgaagatct       600
     aattttgagg atgaagcaag caaacaacgc tccgtctgcc acaccacagg tgatcattca       660
     acaacagccg ctgaaggctc ctatacccac cttcgacggg aactacgaaa gctggccaaa       720
     attcaaggca gtctttcaag acttaatggc caactccgct gacacaaacg caatcaaatt       780
     ataccacttg gacaaagctt tggtaggggc ggcagcagga gttttggatg aaagtatcat       840
     cagtcaaggc gactatgacc aagcctggaa tgtgttgcaa gaccgctacg agaatctgcg       900
     agttatcgtc gagtcacaca tacgagggct actcaatttg aagaaaatga cagtagaatc       960
     acacagggaa cttcgacggc ttcttgatga gtcaacccga catgttgaaa gtcttcgata      1020
     tttgaagcag gatttgtccg ggatatctga gcatatcatt gtgtatgtaa tcaccaacgc      1080
     tttggacaaa tcaacgcgca aggcttggga atctactcag aagcgaggag agctacctcg      1140
     atataatgct actatcaact ttttgaagaa tagatgccag attctcgaaa attgtgaacc      1200
     tgcgaccccc acaatgaccg taacaacaca accatataaa cccaaatcca ccctgcctct      1260
     atcgaagata ccagcacaga aaagcaacgc tgcaacgaca aatgctgcct caaccttcat      1320
     ggaatcctgt gaattctgca gcggtgcgca tttgaacttc cagtgtccca ctatcaagaa      1380
     cattcccgtc tcacagaagc tggaaaaagt tcgcactgcc agcatgtgct tcaattgtct      1440
     ccgaagagga caccgatcaa gcaactgccc ctccaataat tcgtgtcgta aatgtcaaaa      1500
     gcggcaccac accattctgc acgaagataa catgtaggaa tccagtcaaa atgagcagcc      1560
     aatcaccatg tgttcaacgc cagaaactgg aaaaaatccg gatgataatc ttgttcaaga      1620
     accaccggta tcgaccacgt gttcgttcag ttatggtcag tcaacaaaga atgtactttt      1680
     gttgacagct gtagttgatg tcatcgaccg gaacaaccaa caccataatt gccgtgtgct      1740
     tctcgacagc gggtcacagg tgaattttgt aacagaggaa atggccaatg tacttggatt      1800
     ccctaagcaa ccagccaacg tatcaattac tgggattaat gccttgaaaa caatcgcccg      1860
     agaaaaaacg tttgtcaagc tccgatccaa acatgagaac ttcatcgcta atatcgaatg      1920
     tttgataacg cccagagtaa caggtactgt cccaacaacc aaactggata tcacgaggtt      1980
     gcctattccc aataacatcc agcttgccga tccaacattc catgttccgg ggaaaatcga      2040
     cttgttggtc ggagcagaac ttttcttgga tctgttgaag cctggtcaac atgttattgc      2100
     agagaaccat ctgcaattga aagacacaca cctgggttgg gtggttgcag gatcagtcaa      2160
     tccacaccat ccgttcgaag aagttgctca gctctcaaat cttgcttcta tcaacgttgt      2220
     ggagaacata gtacgcaaat tttgggaaat tgaagaattg tccgacgcat cgccattgac      2280
     agtcgaagag cagtcttgtg agactcactt caaatcaact accaaacgtg atcttgatgg      2340
     gcgatttatt gtgaatctac cgctgaagga taattatgca gaattggatg attgcagagc      2400
     gttggcattg aagagatttc taatgctgga gaagcgattg gcgcgagatc cagagctccg      2460
     tctacaatat gccgatttta taagagaata cgaagctctt ggacattgtc acgaggtgca      2520
     cgaagccgac gacacaccaa accgaacggt acactatatg ccacatcacg ccgttctgag      2580
     accatccagt tcgagcacga agtgccgcgt agtgttcgat gcaagcgcga aatcatcttc      2640
     gaagccatca ctaaatgacg tactgaaaat tggcccaacc gtccaaagag atttgttctc      2700
     tattatgttg ggattccgaa gccatgttat tgcattttcg gcggatatca caaaaatgta      2760
     tcgccaaata ctcgtggctc ccgaagatac ttgcttccaa aggattttct ggagagaaca      2820
     accatcggat cgtttgcgaa ctctggaatt aaatacagtc acctatggaa ctgcgtctgc      2880
     tccgtaccag gccactcgat gtctaatgca gttggctgaa gaagaatcac caagttttcc      2940
     aatcggttcc cgcatcatta aggaagattg ctatgtcgat gatgtcttgt ctggcgctaa      3000
     tactgtcgaa gaagctatcg agtgccagcg ccagttgaag gaaatgcttg ccaaaggatg      3060
     cttccctata cacaaatggg gctccaattc agctgaattt ttggaaacca tacctcccga      3120
     agaacgcgaa aagcagctat cgttgcagga atatggagcg aatgaagcca tcaaggtgtt      3180
     gggacttctc tgggatccga acagtgatca tctcctcatt gcccatcaat ataacaggat      3240
     ttcggggaag gacctgccgc caactaaacg gacaatctat tcgcaaatag caagattgtt      3300
     tgatcccatc ggcctgtttt ctccatttat cgtcgtcgga aaacttctta tgcagcaact      3360
     ttggaaaacc agcacgggtt gggatgatgt cgtaaacgaa cagctgcaac agcaatggtc      3420
     cacgttcgta aaagccctgc ctcaattgaa cttgattaag gtcccacgat gtatacaact      3480
     accagaagct gtggcatatg aacttcatgg attcgccgac tcatcagcag tggcgtacgg      3540
     tgcatgcctt tacattcgaa gcattttctc tgatggatca gctactgtac gtctcctcac      3600
     aagcaagtcc aaggtcgcac cactacacga gttgtcaatc ccaaggaagg aattgtgcgc      3660
     tgctttattg ttggctcgtc tgctggataa ggtgttccct gctttgtcta taagcatgca      3720
     ggatactgta ctttggtgcg acagcacaat agttttagcc tggatgaaga agccattaga      3780
     tcgactacat gtgtttgtgc gcaaccgcgt ggcggaaatt caaaacttaa ccagcgagta      3840
     taaatggtgt tatgttcgtt ccgaatgtaa tccggcagac gtagtatcgc gtggacaact      3900
     accagatgaa ctgacaacca ataacctttg gtggaatggt ccggaatatc tcaatacgaa      3960
     acactacgaa gtagacgaac ctgaagaaat acccgaacaa tcactgcctg aaatgaaaca      4020
     gattatcgta atgtcagccg ttgaactgga accgttgccg ttattttcca agtacagcag      4080
     ttttcgcaaa ttacaacgta ttgttgctta cattctacga ttcgcgaata actgccggaa      4140
     aaagaatcgt tcagaacgca tcgcatcacc tcaaccgact atcgctgagt tgcaatgttc      4200
     aacgttagca attttcaaga tggtacaaca agtgcacttc atggatgaaa ttcagcgtct      4260
     tcgttcgaat aaaccttgta aaagacttgg aaatcttcga ccttatatgg aaaacggcct      4320
     gcttcgtgtc ggaggccggc tctctaattc ccagttaccc tatccatcga agcatcctat      4380
     cattctacca tgtaaagatc ttgttgtaaa gatgttcata agcacaatgc acaacgaatt      4440
     gcttcatccc agccaagcag tactcatcaa ctttattcga cagcgttatt ggttacttaa      4500
     cgctcgttca acagttcgac aagtgacacg aaagtgtgtc aaatgttttc gtgtcaaccc      4560
     accagaatcc gtgcaattga tggggaatct tcctcgacct cgcatcgtgc catcgccacc      4620
     cttcgcaata accggtgtcg actatgccgg tccgtttttg gtgcgtcaag gatcctaccg      4680
     cccaaaactt gtcaaggctt atgtggctgt gtacgtttgc atgacgacca aggctttaca      4740
     tcttgagatt gtttctgatt tgacatccga agcattcttg gcgtcgctta gaaggttcat      4800
     cagtcgcaga ggactcgtcc aacagttaca ttcagacaat gcaaccaatt ttaagggtgc      4860
     gaatcacgag ctgcatcaat tgtatcgtct cttcatggat cagcccacac tcgatcaaat      4920
     acgtgagtat tgcgaaactc gtgaaattga ttggcaattt atcccgccag acgccccaga      4980
     gttcggtgga ctctgggaat ccgccgtaaa gtcgacaaaa acgcatttga agaaaatttt      5040
     gggcaacgca agcttgacct tcgaggaatt ttccaccgta ctaaccgaaa tcgaagcggt      5100
     gctcaactca agaccattgt tcagcatttc aactgatcca gatgatcctc tggtaataac      5160
     tccagcacat tatttgattg gccggcctct aattgcaccc gctgaaccat ctttggaaaa      5220
     cgtgaaggtt agtcgtctaa gtcgatggca acatttgcaa ctaatgcgcg agcatttttg      5280
     gcgtgcctgg agtaaggact acttgcattc attgcaacca cgcaagaaaa atcgtatgat      5340
     gatgccaaat ctgcgacctg gtatggtcgt actcgttcat gataaagcat tgccaccgct      5400
     aaaatggaaa atgggaagaa ttactaccgt ataccctgac aaggaaggac tagtgcgtgt      5460
     tatagatgtt ttcgtcgatg gatcaatttt tcgtcgatcc ataaccaagg tgtctgttct      5520
     tcccattgag gataacaaat tgcaggagcc gaataatctt gcaacgtagt tacaaccggg      5580
     ggagta                                                                 5586
//
ID   BEL-868_AA-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 25.10, Created)
DT   17-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-868_AA-I;
KW   BEL-868_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-321
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-321
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2999-2999 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 321 BP; 91 A; 80 C; 63 G; 87 T; 0 other;
     tgttccgtcc gtcacgatca atcatcacat tgaagcgccc ctcgaagccc atctctggaa        60
     agcagtagtt cattttaaaa cattcatgat cagttgtatt tgagccacga agaagaacag       120
     aagtaaattt gttaaaagta gatttttgtg tttgatttaa ggctctacca ccaagtgtcc       180
     agtctaggtc ccggagaaac ccagcgattt cactgtggac tcgacaagtt catttaagcc       240
     agctttgata caggagaaac ccagcgattt cgtccctagt cttagccctc caagttccat       300
     atacgttccc cagccggaac a                                                 321
//
ID   BEL-869_AA-I repbase;    DNA;    INV; 5378 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 25.10, Created)
DT   17-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-869_;
KW   BEL-869_AA-I; BEL-869_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5378
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5378
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2978-2978 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 5378 BP; 1464 A; 1280 C; 1383 G; 1246 T; 5 other;
     tttttggacc ttctcggccg gatatggaga agctaatcaa caagcgaact gcgcttatag        60
     ctcgtgtgaa agcagagctt tcagtcgtga aagacctcca ccagcggaaa ccttcccgaa       120
     gcgaggttat ggatcggctg gaccagctcc agcaaacagc ggtcatcttc cgagctattc       180
     aagccgaaat cgaggaaaac caggaggatc cagcggcgat tgcttcggtt ttcaatgtgc       240
     gggaggagtt tttcggagct ttctataaag ctaaagatat gctcgaggat ttgatcgagg       300
     aagagcaatc gacgacaagt cagcgcacaa atgcagaccc cgacgattgg aaggaagcga       360
     tgaagctgct catggagacg cagcggcaaa tgttgctgaa tcagtcagcg atgtttagaa       420
     gtgcaagtgg tgtgggacaa aatggcggcg atccagtcga cgaagctgtt ggtagcaacg       480
     gtcaggtatc gaattgttca ccccaagtgc gattgccagc aataaacatt cccccattca       540
     atggcgaacg caaaaagtgg atgacattca aggacctcta cgtgtcaact atacacaatc       600
     ggaaggacat cagcgactcc ttgaagatgc aatacctttt ctcctacctg gaaggagacg       660
     cgaagcagct tgtcaacaaa ttcaccatct ccagtgctaa ctatgcgaat gcgtgggatt       720
     cgctcaccag tcattacgac aaaaaacgtt ataccgtgtt tgcgttggta agggagttca       780
     tggatcagcc aacaatcaca cagccatcgt cgcaatctct gaacaaactc gcgtcaaccc       840
     ttgacgaagt agtccaacag ttagatacgc taggagtaga ataccaaggc cgcgacccgt       900
     ggctgatcta cctgacgttg gaaaagttgg accgtgatac ccgtgcagct tggtcggaga       960
     aggcgatcga gaacgagaac ccaacgttcg aagagttgat ggcgtttgtg aagaagaggt      1020
     gtgaaatgct cgagacatgc tcgacattct cgaagaagtc gaccggagaa gtgcttaaga      1080
     aagaacaatc gaaagtgagt gagaagaaag taagagctct ggtgaccacc acaatggaca      1140
     aaaagtgcgc gaagtgttcc agtgaacacg ctacgttcgt ttgcgaagaa ttcaagaagt      1200
     tgaacctgca agaaagaaga ggatttgctc aggaggcacg actgtgctat aattgcttgc      1260
     gagcgtcgca ttcagcaaaa tcatgcctat ctaagtcagt gtgccgtact ccgggatgtg      1320
     gacaacgcca tcacacgttg ttatgtccga acacgagcaa ggaaaaagaa gttcctatgg      1380
     tgaaaagtga attgcaaaat ccgccagtca acgaagagga agtggttacg tcgttaacag      1440
     cggcagttgg caagcaaccg ttgattccgg tgttcccaac ggcggtggtg caagtgcgaa      1500
     aggatgacgg tacatttggt cgcgttagag tgctgatcga ctccggcgcg caagcatcga      1560
     tggttacgga agactgcgtg cgaaaactag gactcgtcag gcgtaacggt aaggttgtgg      1620
     taactggcat cggacagcag gccgctggta ccactcgtgg tgtcgtaacg ttgcaccttg      1680
     cctctcgatt caacgacatc gttgtcatct caacaagtgc ctacgttctt agcaagctaa      1740
     cgtctactct tccgtctcaa cgattcaaca ttggaaatgt gacgctcttg gagaacgttg      1800
     gcgaaatggc agatcctacc ttcaacaagc ctggaccaat tgacgtgatt ctgggctcgg      1860
     acgtctttct tgccctctta gagggaggtc aagtcaagga cgaaaccggc caaacggtgg      1920
     cacagcgtac cgttttcggc tggatcgcag cagggcgata cgacgaggca gaagtaatgc      1980
     gaggaaatca cgccatagtc agtctgcata cggagatgga tttgaatcgg acgttgcaac      2040
     aattttggga atacgaggaa attttcaagc cacccccgtt tactccctcg gaaaggaaag      2100
     tcatcgaaca tttcgattcg actacacaac gcgatggtac agggcgcttc atcgtgaaat      2160
     tgccattcga cgattcgaag cccgcccttg gtgaatctct gtccgctgca acgaaaaggc      2220
     tcacgtccat ggaaaaacgg tttgcaacaa acccggagtt ccaacaagaa tatgttaact      2280
     tcatgcgtga gtacttggag atgaaccata tggaaccagt tccggtcaac gaaattggga      2340
     agtcggctac ggaacattac tacttaccgc accacgcggt ggtaaaggtg gatagcagca      2400
     caacaaagct gcgcgttgtt ttcgacgctt cgtgcgccac ttcaacaggt gtttctctca      2460
     acgatcgatt gttgcctgga ccgaatatca acaacgattt actatcggta ctactgcggt      2520
     ttcgttcgta caaggtggca tttagcgcag acattgccaa aatgtaccgc caagtagtgg      2580
     tgagcgaaga agatcgtgac ttccaacgca tagtgtggcg tgaaaatacc gagcagccaa      2640
     tacaacacta tcgcctctct acggtgacat atggcacgaa gacggcaccc taccttgcaa      2700
     tacgtgccat gagggagtcc gccaaggatt atgtctcgtc gcaccccgca gcagttgagc      2760
     gtatcgttta cgatttttat gtggacgatc tactgtcagg agccgacgac gaagaagaag      2820
     cgactagcat caaggaacaa ataagcgata ttttgtccaa gtccggcttt gaactgcgga      2880
     agtgggcctc aagctgccct agcttgctac aagacgagtc tccagtagca gtgccgatga      2940
     aactttcgga tgaagcggat gcagtgaagg cactaggaat ccattggtac ccgacggaag      3000
     acgaatttgg attcaaggta aactttgcca tcgatgcaat aaacaccaaa cgtcagatga      3060
     tttcagacgc gtcgaaattg tttgatccgt ttggttggtt ggcgcccgta atcgtcaaaa      3120
     tcaagatttt gtaccaacac ctgtggttgt acgatgtcaa ctgggatgac cccttgccga      3180
     cagccatcga gtcggaatgg gttaatttga agcagaacct ttctcagcta gaaacaattc      3240
     gaatcccaag atttgttgcg cacaaccgcg gcaaaattca gttgcacggt ttttcagatg      3300
     cttctgagca agcgtatgct gccgtggttt actcgcggtc cgtcgacgac acagggaaca      3360
     tcacggttgt tctaattgcc gcaaaaagcc gtgtggcgcc tattaagcaa gtatcgctgc      3420
     cacggttaga attgaatggt gcattactat tgaccgaact catgaagaaa gtgactgaag      3480
     cgatgccaca ccgagaaatc gagcactttg cttggaccga ttcaactatc gttctacaat      3540
     ggttatcgtc gcaccctcgt tcttggaaga catatgtggc aaaccggacg tctgctgttc      3600
     tcgaatttct tcctcgtgat cggtggcaac atgtcactag cgaatcaaat cctgctgact      3660
     gtgcttcacg tgggatctct ccgagcgaac ttgctgagca caagatgtgg ttccaaggac      3720
     cgcaatggtt ggccgccgac gaatcagatt ggccatcaag maccastcaa gccattgcca      3780
     gcgacgaact accggaaaaa agaagcttga aaatgatgca tactactgac cccgcgacgs      3840
     tcccktttcg agatgactgc ttgatcgaac aacaactatg ggagaggcgt tcaagtttca      3900
     acctcatcac gcgcacattg gcttgcatca atcgctttat ccataacgtc aagtcacatc      3960
     ccgaccagcg gcgtacagga caactggacc cmtgtgaaat ccacccagct aaactacaat      4020
     tgctacgcgc tgcccaacag gaggtattct catctgaaat gaaattactt cgaagtggta      4080
     agttacttcc gtcaaagaat gtacttgccg ctttgcatcc atttttggat tccactggaa      4140
     cgatgcgagt tggaggacgc ctggaaaatt ccgcccaatc gtacgaaagc aaacatccga      4200
     taattttgcc taaatcgcat cgggtgactc aacttctggt gcgtgaacta catttgcaaa      4260
     actttcatgc tggtccaaca ttactcactg cggtggtcaa tcagcaatat tggatcgtgg      4320
     gttgccagac tgtgttgaga gatgtggttc gaggatgtac acgatgcgtc cgcttgaaag      4380
     ggaagacagc cacccagctg atgggtaatc ttcctccggc gagagttttg gcgacacgag      4440
     cgtttgcatt cgttggcatt gactacgcag gtcctttgaa aatcaaggcc agctgcgttc      4500
     gaggtgttaa aataagcaaa gggtacatcg tggtctatgt ttgcctgtcg acccgagcga      4560
     tacatttgga ggcagcaagc gatatgacca caaacacatt tctgagtacc ttgaagcggt      4620
     ttgtgtcgag acgtggctat ccaaatgaaa ttcgttccga caacggcacc aatttcattg      4680
     gtgcagatcg tgtgctgaga gaatttatgg aacaaataca agccaactgt aaggatgctg      4740
     gacgatatct tgccaaccga ggaatcagat gggtgttcaa ccctccgtcg gcgccccata      4800
     tgggaggcat ttgggaggcg gccgttaaaa gcgtgaagca tcatctggta gcagaacttg      4860
     ggacggaagc tacaacattt gaagacttga caacaatact gtgccaaatt gaagcatgcc      4920
     ttaatagtcg accattgtgt ccactatcga gcaaccccga tagctgcgag gcattaactc      4980
     ccggtcattt tttggtcggt caaccgctga atctaattcc ggaacctgat cttcagcaca      5040
     ttccacgtaa tcgtttggac caatggcaaa gcattcaaca gcgctccgtg caaatttggt      5100
     cacgttggaa ggatgaatat ctcgccagtt tgcagccacg caccaagtgg cgttcgtttc      5160
     agtcgaacct ttcggtgggc caattggttt tagtaaaaaa cgacaacgct ccacccacac      5220
     agtgggagct ggcacgtgta gatgcggtcc atccggatgc ttctggtgtg gtaagaacag      5280
     taacgctgcg tcgtggatct actatttatc agcgccccat ccacaagcta tgcgtgcttc      5340
     ctgttgattg acgccggtgg cctcaaggtg ggggtgta                              5378
//
ID   BEL-869_AA-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 25.10, Created)
DT   17-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-869_AA-I;
KW   BEL-869_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-213
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-213
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3000-3000 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 213 BP; 64 A; 46 C; 44 G; 59 T; 0 other;
     tgttttggta tcggtgcgcc cctcgactca gcgcaacaac gtttcccatc ctgaatgcgg        60
     ctctgtggat attgccgcgc tctcgcagag aaaaagaaaa agtcagtgtg aattcgaact       120
     ctgtacaaga cagaagaaaa ataaaacagt ttaaatttcg tttcgataag tttaattttc       180
     ggcgttttaa tacagtccat tggctccaaa aca                                    213
//
ID   BEL-86_AA-I repbase;    DNA;    INV; 6387 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-86_AA_;
KW   BEL-86_AA-LTR; BEL-86_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6387
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions  650890  644504.
XX
CC   Positions [5420-5980] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1178..6337
FT                 /product="BEL-86_AA-I_2p"
FT                 /translation="MDQPEAATVPNRSNHPLQQPLYRLSSAHQPHPSDRVA
FT                 MHNHASFTQRHPMFPSEPRSELPRKNRQDADDTREQRQSNNMETEFTPMVI
FT                 NASQLAARQVMGKELPNFSGNPEDWPIFICSFELSTAACGYTDAENLIRLQ
FT                 RCLKGHALESVRSRLLLPSSVPQVINTLRTLYGRPELLIRTLIEKVRYTPA
FT                 PRHDRLETLVEFGLVVQNLVDHLKAAKQYTHLSNPVLMQELVEKLPGSLRM
FT                 DWAIYRSKQPYATLATFGDFMTGLLEAASQVTFELPNSSRSSRGEQRRTKE
FT                 KGLLHAHSSIPVSSLEPPSSPSPKRSGKPCAACEREGHRVADCHKFKSLSN
FT                 DERWKIVHQGGLCRTCLNGHGKWPCRSWQACAIEGCNEKHHTLLHPPSPIQ
FT                 SSLNVSVNNIMQKNGSSPMFRVLPVVLYAGKRREVVFAFIDEGSSTTFLEK
FT                 TVADRLGVSGPVEPLTLQWTGNITREERKSQRVQLKISGEDSLNIHKLCEV
FT                 RTVNCLVLPTQSMKYGELCHQYPHLRGLPLKDYELIQPKLLIALDNLRLAV
FT                 PLKVREGGVSDPIAVKCRLGWSIYGCVQGSSSPRAVVHFHVAASADSDRQL
FT                 NDQLRDYFALEDAGTSEQMRLLESDEEKRARTILQQTTKRTDRGFETGLLW
FT                 RDDNPDFPDSYPMAIRRLKALERKLSKNNWLHERVREQISEYLRKGYAHKA
FT                 TESELNNADRKRMWFLPLGVVVHPRKPNKIRLVWDAAAMVDGVSFNSKLLK
FT                 GPDLLTPLPAVLSRFRQFPVAICGDIKEMFHQLSIREQDRLAQCFLWRDSP
FT                 TNPVQIYVMDVATFGATCSPASTQYVKNINAEEFSEDYPRAATAIVKNHYV
FT                 DDYLDSFQTVDEAADVIKEVAWVHSLGGFEIRGFRSNSTELLREIGGPSAV
FT                 DEPKNLMLERSATSESVLGMSWDPTNDCFSYCFNLRDDLRSILDVNHIPTK
FT                 REVLKVVMSLFDPLGLVSHFLVHGKVIIQGTWAARTRWDEPINEDLNRKWR
FT                 QWVSLFPKLNELKISRCYFSQFPSSIKNLQVHTFVDASDIAYSCAVYFRLV
FT                 HEDCVQIALVGAKCKVAPLKTLSTPRLELKAAVLGVRFVAAILEYHSLPVS
FT                 QRFFWSDSTTVLAWIRSDHRRFHKFVSVRIGEILTLSEPQEWKWVQSKLNV
FT                 SDDATKWKDGPNLKPESTWFDGPRFLYFDEAAWPEQRITTTTHEELRRVQT
FT                 HWSREPMIDYSRFNEWTRLQRTMAYVVRFINGVRQRNDGLNIQLKVLTQEE
FT                 LAQAEVLLWKTAQKEVFAEERSALEKTMGTPEARHAVVSKSSPIYKTWPYM
FT                 DGQGILRMRGRIEAAGYLPFHARYPVILPKTHPVTTLIVGWFHRLYRHANR
FT                 ETVTNELRQRFEIANMRSIVQKVAKDCSWCRINKAFPKTPVMAPLPKERLE
FT                 PYVRPFTYVGLDYFGPVLVKVGRSQAKRWIALFTCLSVRAVHMEIVHSLST
FT                 ESCIMAVRRFISRRGSPAVIYSDNGTCFQGANKQLTEEIAARNEAMAHTFT
FT                 NADTKWKFIPPATPHMGGVWERLVRSVKTAIGLALEYPRKPNDETLETIIY
FT                 EAEALVNSRPLTYIPLESADQESLTPNHFLLGSSTGNKIETTEVSGYAALR
FT                 SSWKMAQHIVNEFWKRWIKEYLPVITRRSKWFEETKDLMVGDLVLIVSGSG
FT                 RTQWTRGRIEEIFIGSDGRVRQALVRTANGVLRRPACKLAVLDIEGGCEPM
FT                 "
XX
SQ   Sequence 6387 BP; 1827 A; 1501 C; 1553 G; 1506 T; 0 other;
     actattaaaa ctatattatc ctatctaatt ctgaaactat ttacactaag cttttcctga        60
     atcgtgaatt tgtgcttaaa actagaggtc agattttgaa atcatctgta agtaataaaa       120
     attaggccta attgaactta aaaactaata tgtacaatac gattgtagca aacgcctatt       180
     cacgagggtt atcgatacga tccttccaaa ctctataaaa cgtgcactaa aatcgtaagt       240
     aaattgtata ctttttgcgt atcagttaat aaaaatgaac tttttagctt gaagcttaca       300
     ttaccacaaa aacgtgtttg ctgtcgagat ttagtgacaa cccctccgaa taaaaatctt       360
     caaggatttt atctacgggg tctcagaatg gaagcacatc agaaacccgc cggatacagc       420
     tgcaagtcct gcgatagacc ggacaccgac gaggagaaat gggtcgctcg cgatagctgt       480
     aagctctggg agcactttgg ctgtgcgggg gtggatgatt cggtaaagaa ccggccctat       540
     cgctgtcagg agtacaaaac caaaaccgct gtccataaaa tgccgtcatc tcgcaatttg       600
     ctaccaccac cttcagaagg tagatcgctg agatcatcaa cggccaagtc tggtctgagg       660
     caggtcaata aagtgactca attggcatca caattcgctc ggagcgctca tagcacgact       720
     tcgagtgtcc gtgctgcccg tctgcaagcc caaatgaagc tggtcgaaga ggagcaatta       780
     ctgaaggagc aggagttaga agcccaagaa gcgatgcgga agaaagaaat ggaagaagaa       840
     gaacgccggc tagaagaaag gaaagcacta ttggaagaag aagcgcggct acggcaacga       900
     aagctgcaag acgaaaagga gtatcagaag cagcaacagt tgatcaggat ggaatctctg       960
     gaaaaaaaaa aacaccatcg ctcggcaact aagcgagtgc agcagcagag gtacatcgat      1020
     ccccgattca gatcaagagg tggcccgttg gcttcaacaa tgttcgccaa atttactcga      1080
     cgatagaatt cgatctctaa gaattgatcc tgaagaatca gtaccagaag ccttacctaa      1140
     ttcatccttg tttgcggact gccaacaaca agtagaaatg gaccaaccag aggcagcaac      1200
     cgtgccgaat cgttctaacc atccgttgca gcaaccatta tatcgcctct cttcagccca      1260
     tcaaccacac ccctcggatc gtgtagcgat gcacaatcat gcgagcttca ctcagcggca      1320
     tccaatgttc ccctcagaac cgagatcaga attgccacga aaaaacagac aagatgccga      1380
     tgatacacga gagcagcgac agtcgaataa tatggagaca gagttcactc ctatggtaat      1440
     caacgccagc caacttgcag ccaggcaggt gatggggaaa gaattgccca atttctcagg      1500
     taaccccgaa gattggccga ttttcatctg tagcttcgag ctatcgacag ctgcttgtgg      1560
     atacaccgat gcagaaaatc tcattcggtt acagcgatgc ttaaagggac atgcactaga      1620
     atcggtgcga agtagactcc ttctcccttc gagtgtccct caagtcatca acacccttcg      1680
     aacgctttac ggcagaccag agctactcat aagaacactt atcgagaagg tgcgttacac      1740
     tccagcacct agacatgacc gcctggaaac gttggttgaa ttcgggctcg tcgttcaaaa      1800
     tctagtggac cacctgaagg cggcgaaaca gtacacgcat ttatccaacc cagtactaat      1860
     gcaggaatta gtagagaagc tccccggttc actcagaatg gactgggcaa tttaccgaag      1920
     caaacagccg tatgctacgt tggcaacatt cggggacttc atgacgggac tactggaagc      1980
     ggctagccag gtgaccttcg aacttccgaa ctcaagtcgt agctccagag gtgaacaacg      2040
     acgtaccaaa gaaaagggtc ttctccatgc tcattcatca atacccgttt cctctttgga      2100
     gccaccgtca tcaccaagtc caaaaaggtc aggtaagcca tgcgccgcat gcgaacgtga      2160
     gggacaccgg gtggctgatt gccataaatt caagtccttg agcaacgacg agcggtggaa      2220
     aatcgttcat caagggggat tgtgtagaac ttgcttgaat ggtcatggaa agtggccttg      2280
     taggtcttgg caagcgtgtg caattgaagg ctgtaacgaa aaacatcaca cccttcttca      2340
     ccccccttcc cctatccaat catccctcaa tgtctccgtc aataacatta tgcagaaaaa      2400
     tggttcctct cccatgtttc gagtccttcc tgtggtatta tatgccggta aacggaggga      2460
     agtcgtcttc gcctttatcg acgaaggctc atcgacaaca tttttagaga agacggtcgc      2520
     tgatcgtctg ggtgtttcag ggccggtcga acctttgacg ttgcagtgga cgggcaacat      2580
     aactcgagag gaacgaaaat cacagcgcgt gcaactaaaa atttctggtg aagatagtct      2640
     caatatccat aagctatgtg aggtccgaac ggttaattgt ctagttttgc cgacgcaatc      2700
     catgaagtac ggcgaactct gtcatcaata tcctcatttg cgtgggcttc cattgaaaga      2760
     ttacgaactc atccaaccga aactactaat tgcattggac aaccttcgtt tggctgttcc      2820
     tttgaaggta agggaagggg gagtttcaga ccccatagca gtaaaatgcc gactgggttg      2880
     gagcatttac ggatgcgtgc aaggttcatc atccccacgc gctgtagtcc atttccatgt      2940
     tgctgcatct gctgacagtg accgccagct gaacgaccag ttacgtgact attttgcgct      3000
     agaggatgct ggaacaagtg aacagatgag gttgttagaa tcagacgaag agaagcgagc      3060
     gagaacgata ctgcaacaaa caactaaacg cacggatcgt ggatttgaaa ccggactgtt      3120
     gtggcgggat gataatccgg attttccaga tagctatccc atggctattc gtcgtttgaa      3180
     ggctttggag cgaaaattat caaaaaataa ctggttacac gagcgtgtgc gcgagcagat      3240
     ttctgaatat ttgaggaagg ggtacgctca caaggcaacc gaatcggagc tgaacaatgc      3300
     tgatcgcaaa cgcatgtggt ttctaccact tggcgtggtc gtacacccca ggaaaccgaa      3360
     taaaattcga ctggtgtggg atgcagcagc gatggtggac ggagtctctt tcaactcaaa      3420
     gcttttgaag ggacctgatc tactaactcc acttccagcc gttcttagcc gtttccgtca      3480
     gtttcctgta gcaatctgtg gcgacatcaa agagatgttt catcagctct caatccgtga      3540
     acaagaccgt ctggcacaat gttttctttg gcgcgacagt ccaacgaatc ctgttcagat      3600
     ctatgttatg gacgtggcaa catttggcgc aacctgctcg cccgcctcaa cgcaatacgt      3660
     aaaaaacata aacgcagaag agttttccga agactaccca cgagcggcga ctgcgattgt      3720
     taaaaatcat tacgtcgacg attacttgga cagctttcag accgtcgatg aagccgctga      3780
     cgtgattaag gaagtagctt gggtccactc gttaggaggt tttgagatcc gaggtttccg      3840
     ctccaattct acagagcttc ttcgtgaaat agggggacct tcggcggttg atgaaccgaa      3900
     aaacttaatg ctggaacgaa gtgctaccag tgaatcagtg ctggggatgt cctgggatcc      3960
     cacgaatgat tgtttctcct attgcttcaa tctacgggac gatttgcgct caatactgga      4020
     tgtaaatcat attcctacca aaagagaggt tttaaaggtc gtaatgagcc tattcgatcc      4080
     gctcgggctc gtttcacact ttctcgtcca cggaaaagta ataattcagg ggacgtgggc      4140
     tgctagaact agatgggatg agccaattaa tgaagacctt aacagaaagt ggcgtcagtg      4200
     ggtgtcactc ttcccgaagc tcaatgaact aaaaatttcc cggtgctact tctcacaatt      4260
     tccgtccagt atcaagaatc tacaagttca cacctttgtg gatgccagcg atatcgccta      4320
     ctcttgtgct gtatattttc gtttagtaca cgaagactgt gtccaaatag cgctggtagg      4380
     agctaagtgc aaagtggccc ctctaaagac actatccact ccacggctag agctgaaggc      4440
     agccgtcctc ggagtaagat tcgtggcagc aattcttgaa tatcattcac ttccggtgtc      4500
     ccaacggttc ttctggagcg actcaactac ggtgctagcg tggattcggt ctgaccatcg      4560
     tagattccac aagttcgtgt cggtgcgaat aggcgaaatt cttactttga gcgagccgca      4620
     agaatggaaa tgggtacaat ccaagctgaa cgtttccgac gatgcgacaa aatggaagga      4680
     cggtcccaat ctcaaacctg agagtacctg gttcgatgga cccagattcc tttacttcga      4740
     tgaagcggca tggccagagc aacggattac gacgacaact catgaagaac ttcgacgtgt      4800
     tcaaactcac tggagtcgcg aaccaatgat agattactcc cgattcaacg aatggacaag      4860
     acttcaacgc acaatggcat atgtcgttcg tttcatcaat ggcgtgcgtc aacgaaatga      4920
     tgggctgaat atacaactga aagtactcac tcaagaggag ctagcacagg ccgaagtttt      4980
     gctatggaag acggcacaaa aggaagtctt tgctgaagag cgatctgctt tggaaaaaac      5040
     aatgggcact ccagaagcta ggcacgctgt cgtgtcaaaa tctagcccaa tttataaaac      5100
     ttggccgtat atggatggtc aaggaatcct acgaatgcga ggccgcatag aagcggcggg      5160
     ctatctaccc ttccatgcaa ggtaccctgt aatactacca aaaacacacc cagttacaac      5220
     tttgatcgtg ggatggttcc atcgtctcta tcgtcacgcg aatcgagaga cggtgacgaa      5280
     cgaacttcgg caacgtttcg aaattgccaa catgagatcc attgtgcaaa aggtagcaaa      5340
     ggattgttcc tggtgtcgaa tcaataaggc cttcccaaaa acaccagtaa tggcccctct      5400
     tcccaaggaa cgattggaac cgtatgtgag acccttcacg tacgttgggt tagattattt      5460
     tgggccagtg ctggtcaagg ttggccgaag tcaagccaaa cggtggattg ctctttttac      5520
     gtgtctgtca gttcgagctg tgcacatgga aatagtacac agcctttcta cggagtcgtg      5580
     catcatggca gtccgaaggt ttatatcgcg ccgtggctcg cctgctgtga tatattcgga      5640
     taatggcacc tgcttccaag gggccaataa acaacttaca gaggagattg ctgctagaaa      5700
     cgaagcaatg gcgcacacct ttacgaacgc cgatacgaaa tggaaattca ttccacctgc      5760
     cactccgcac atggggggcg tttgggagcg cttggtaaga tcggtgaaaa cagcaattgg      5820
     attggctctt gaataccctc gtaagcccaa cgatgagact ctagagacca tcatttatga      5880
     agctgaagcg ttagtgaact ccagaccgct cacgtacatt ccattggagt cagcagacca      5940
     agagtcgctg actcccaacc attttcttct gggcagctct acgggtaaca aaatcgaaac      6000
     aaccgaagtg tctggatacg ctgcactccg tagcagctgg aagatggccc aacatatcgt      6060
     taacgaattc tggaagaggt ggataaagga atatctgcct gttataacac gccggagcaa      6120
     gtggttcgag gaaaccaaag acctaatggt aggagaccta gttctaattg tcagtgggtc      6180
     tgggcgaact cagtggacta gaggacggat tgaggaaatc ttcatcggca gcgatgggag      6240
     agttcgtcaa gcacttgtac gaacggcaaa cggagttcta cggcgacctg cctgcaagct      6300
     agctgtgttg gacatcgaag gaggatgtga acccatgtga ctccagaaga attcgagaca      6360
     tcacttaggt tcacaggcgg gggtatg                                          6387
//
ID   BEL-86_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-86_AA_;
KW   BEL-86_AA-I; BEL-86_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions  644503  644314.
XX
SQ   Sequence 190 BP; 55 A; 47 C; 47 G; 41 T; 0 other;
     tgccgacaac acccctcgtt gcagcgacgc cgctggtggg gttacaaaca cttcacgaca        60
     ggccatgcac gtaaccgtca agtatgatag tggaatggaa gacatgtcga agcaatagga       120
     gatttgtata catgcaagtc atcatggtac tactttcctc cgtatgagac gtggctacca       180
     aatcgaagca                                                              190
//
ID   BEL-870_AA-I repbase;    DNA;    INV; 6206 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-870_;
KW   BEL-870_AA-I; BEL-870_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6206
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6206
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-DEC-2018).
XX
CC   A reconstructed sample sequence. Flanking LTRs are 99% similar to
CC   each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(56..3850,3808..6204)
FT                 /product="BEL-870_AA-I_1p"
FT                 /translation="MPKNRSSTHAPACGLCSDSENDQMVACDLCDKWYHYK
FT                 CVHVVDSVADQSWSCPACRNELLAASTPVGHAAKSVISHRSGISSSSSIRA
FT                 ARAALELQQLEERKQLELKRVLEEEERRKQEAELEKARIEQQKLQCEMEAE
FT                 LERKKLERQRRQHEEEQALAKKKIEDEKLRTDLLRSLEEKYLAEKYRILNS
FT                 QLEVTSTNPSSNSSVSSVHTANMKQQRPSGEVAKDAEEVRNKQTDNRVQDG
FT                 VDTNRERLNKMRYEEDKRREESRRMLEQMGFAEKFNMLYGPRMQNAAEWAM
FT                 NLPLEESVPGGMPPFPEPMSKSGQGKYTGAYPKANQQAAIDRDPVSVFPSV
FT                 KRVECPNTQVNWSGSGVDRSRQQIIPPSSFPSQPLHLPTVPEESCSYPGQR
FT                 ALRSEPNPGQVQAASHINPGLPGLTNSQLAARQVLPKDLPSFSGNPEDWPV
FT                 FISNFENSTTECDYSNAENLIRLQRCLRGDALAAVRSRLLLPTSVPSVIDT
FT                 LSMLFGRPEVLINSLLEQIRCTPSPREGRLDTLIAYGMAVQNYCDHLVAAK
FT                 QEVHLSNPTMLHELVEKLPSEIKLKWVDFKDTAPVVNLATFGRFMTQMVRK
FT                 ASEVTTYRPTSAVKASKDEIRKGSSSKAKGYVNHHSDHRSSSDDKMKAWPK
FT                 VCPACSKSGHALDGCGAFKSFSAENRWKVIRMHNLCRTCLKNHNPFPCRRP
FT                 KDCPVSGCRLRHHPLLHASESKPSPQNYHSGHHGVIYRIIPVTVYGTLGSI
FT                 NTFALLDEASEVTMIEKNLADNLGLKGALDPLHLRWTGNVTRVEEHSCVVK
FT                 LEISGTSNKLRFNLVNARTVESMELPVQSIKMDDLIESFPYLKGLPIEGYE
FT                 EARPQLLIGLENLYLAAPLKIREGNRGQPVATKTRLGWCVYGGVLAKSEPT
FT                 RAFFHISRPSEDQQLHQLVKQHILMDSLETSPLGTKLESTENTRARQILES
FT                 TTRRVPGGFETGFLWKEDEVRFPNSYPMALSRLKSMERKMQKSPGLVQRVH
FT                 DLVDDYLKKGYARAATEDDLGTNDQDRKWYLPLGLVINPKXPQKLRLIWDA
FT                 AAQVNGVSLNSKLLSGPDMLMPLTSVQYRFRQRRVAITGDIKEMYHQFKIL
FT                 QQDQKSQMFLYRKDPSEEPTVYLMTVGIFGAACSPCSAQYIKNLNAKEYEQ
FT                 DFPDAAEAIVKGHYVDDFLDSRDSVEEVLRLAEDVRYVHQQGGFEIRNFSS
FT                 NRPEVISRLGEQCTSAVKMWSSESDVAESVLGIRWLPKTDELTFSAYLPSA
FT                 VEIYINFLCIFAQCSRDLLDGSVRPTKRQVLKTVMSLYDPLGFLATFVIQG
FT                 KIIIQDLWRSSCGWDDQVDDAVFNDWQRWVNLLPRLNDVRVPRAYFGDGIP
FT                 ECCQPIQLHTFVDGSSTAYACVVYIRFVQAGQPRCTLVGAKAKVAPIKTLS
FT                 IPRLELQAAVLGTRYAQFVLENHQIPIQQQFYWTDSSTVLHWINSDSRKYR
FT                 PYVACRIGEIVTTTDPTEWMKVPSAINVADKATKWGNGPCFDPEDSWFRGP
FT                 QFLWSAKECWPVQNWRGTEATEELHPVLISRHVFNEPVIDVSRFSKWERLL
FT                 RTVAYILKFGSHEKSPCSEVLVNSQLLRKAEIKLWKIVQSEAFPVELTAMQ
FT                 KTDSTKPSGAVPVSSPLYKLSAFVDEEGLVRMDGRIGTAPNLPTEAKYPVI
FT                 LAQNHPVTFLFVDYYHRRYLHRNQETVVNELRQVVYIPGIRRLVRKVAARC
FT                 QTCKVYNASLNSPKMGPLPRARVEGFVRAFTYTGLDYFGPMIVKVGRRHAK
FT                 RWVALFTCLTTRAIHMEVAHSMSTESCKMCIRRFIARRGAPAEIYSDNGTN
FT                 FRGAANDLQEQIQRANQQCAETFTNTTTKWYFNPPAAPHMGGVWERLVRSV
FT                 KVALQSLNSAPRVPDDETFETMILEAESMINSRPLTYITLDWSGQEALTPN
FT                 HFLLGSSNGVKQPPVEPTPSSDCLRSNWNLIRHALDGFWTRWVREYLPTIT
FT                 RRTKWFKDTKPIEVGDLVFVANEQKRNTWVRGQVIEVIRGKDGVTRQAMVR
FT                 TEAGVIRRPAVKLAVIEVTGNGKVAACEDGQSQPYGSG"
XX
SQ   Sequence 6206 BP; 1762 A; 1382 C; 1593 G; 1468 T; 1 other;
     ttctttaaga tttacggagt caagtgggtt cgatagttta caccgatcaa cgagaatgcc        60
     gaagaataga tcgtcgacac acgcgccggc atgtggccta tgctcggact ccgaaaatga       120
     tcaaatggtg gcttgtgatc tgtgcgataa atggtaccat tacaagtgtg tacatgtagt       180
     agattcagtg gctgatcagt cgtggtcgtg tcccgcatgt cgaaatgaac tgcttgctgc       240
     aagtactcca gtcggtcacg ctgccaaatc cgttatctct caccgctccg ggataagttc       300
     ttcatcgtct atccgagctg ccagagctgc tctagagttg caacagctcg aagaaaggaa       360
     gcaactggag cttaagcgtg tcctggaaga agaagagcgt cgaaagcaag aagcagaact       420
     cgagaaggcg cggatcgagc aacagaaact gcagtgtgaa atggaggcgg aactagagcg       480
     caaaaaactg gagagacaac gacgacagca tgaagaagaa caagcgttag cgaagaagaa       540
     aattgaagat gagaagcttc gtacggatct gcttcgaagt ctggaagaaa aatatctagc       600
     tgaaaaatac cgaatattga attcgcagct agaggttaca tcgaccaatc ccagctcgaa       660
     tagcagcgta tcttcggtac atacagcaaa catgaaacag cagaggccta gtggagaagt       720
     tgcgaaagat gctgaggagg tacgtaataa acaaaccgat aaccgagtac aggatggagt       780
     tgacacgaac cgtgaacgtc tgaataagat gcggtatgaa gaggacaaac gtcgagaaga       840
     atcacgaaga atgctggaac agatgggatt cgcggagaag ttcaatatgc tgtacggacc       900
     gcgtatgcaa aatgctgcgg aatgggcaat gaatcttcca ttagaagaat ccgtcccagg       960
     tggaatgccg ccattccctg aaccgatgag taaatccggc caagggaagt ataccggtgc      1020
     gtatcccaag gcgaatcaac aagcagctat agatcgagat cctgtttcgg tatttcccag      1080
     cgtgaagaga gtagaatgtc caaacaccca agtcaactgg tcggggtctg gcgtcgaccg      1140
     atccaggcaa caaattattc ctccgtccag ttttccgtcg caaccgttac acctacctac      1200
     agttcctgaa gaaagttgtt catatcccgg tcaacgagcc ctgaggagtg aaccaaatcc      1260
     aggacaagtt caggcagctt cacatatcaa cccaggctta cctggtctga cgaattcgca      1320
     attggctgct cgacaggtgt tgccgaagga tctacccagt ttttccggga atccggaaga      1380
     ctggccagtt ttcattagta atttcgagaa ctcgaccacc gaatgcgatt actccaatgc      1440
     ggagaacctt atccgcctgc aacgttgttt gcgaggtgat gcgttagcgg cagttcggag      1500
     ccggctatta cttccaacgt cggttccaag tgtgatcgac acgttgagca tgctgtttgg      1560
     tcggcccgaa gttttaatca attctcttct ggaacaaatt cggtgcacac cttctccaag      1620
     agaaggaaga ctggacactc ttattgcata tggaatggcg gtccaaaatt actgcgacca      1680
     tctagtggcg gcgaagcaag aagtgcatct ttccaatccg actatgttac acgaactggt      1740
     tgaaaagctg ccatcggaga tcaagctcaa gtgggttgat ttcaaagata ccgcacctgt      1800
     agtaaatctc gcaacctttg ggcggtttat gacgcaaatg gttcggaaag ccagcgaggt      1860
     gacgacgtat cgaccaacat cggcggtgaa ggcatcaaaa gacgaaattc gaaaaggaag      1920
     ttcttctaag gcaaaggggt acgtgaatca ccatagcgat caccgttcgt ctagtgatga      1980
     caaaatgaag gcgtggccga aggtgtgtcc agcatgcagt aagtcgggcc atgcgttgga      2040
     tggttgtgga gcgttcaaat cgttttccgc ggagaatcgt tggaaggtaa ttagaatgca      2100
     taacctgtgc agaacgtgtt tgaaaaatca caatccgttt ccctgccggc gacctaagga      2160
     ttgtcctgtt agtggatgta ggctacgtca tcatcctctt cttcatgctt ccgaatcaaa      2220
     acccagtcca caaaactacc attctggtca tcatggcgta atttaccgca ttattccagt      2280
     cacggtgtat ggtacgctag gttccatcaa tacatttgct ctgcttgatg aggcatcgga      2340
     agtaacaatg attgaaaaga atctggctga caacttagga ctaaaagggg cacttgaccc      2400
     actgcatctt cgctggactg ggaatgtgac cagagttgaa gagcattcat gtgttgtgaa      2460
     gctagaaata tctggtacga gcaacaaact acgtttcaac ttggttaacg cacgcaccgt      2520
     tgagtcaatg gaactacctg ttcagtctat caagatggat gatctaattg aaagctttcc      2580
     gtacctcaaa gggctcccca tcgaagggta cgaagaagct cgcccgcaat tgcttattgg      2640
     actagagaat ttgtatttgg cggctccgct gaagattaga gaggggaatc gtggccagcc      2700
     agtcgccaca aaaaccagat taggatggtg cgtatacggc ggtgtgttag ctaaatctga      2760
     gcctacccga gcattttttc acatcagccg tccatcggaa gatcagcagc tccatcaatt      2820
     ggtaaagcag catatcctaa tggacagtct agaaacatcg cctttgggaa ccaagcttga      2880
     gtctacagaa aacacaagag ccagacagat tctggaatca actactcggc gtgtaccagg      2940
     aggcttcgaa actggatttc tttggaagga agatgaggtc aggtttccaa atagttaccc      3000
     catggccttg agccgtttga agagcatgga acgaaagatg cagaagtcac ccggactggt      3060
     tcaacgagtg cacgatttag tggacgacta tttgaaaaag gggtacgcac gagcagcgac      3120
     agaggacgat ttaggtacca atgatcaaga tcggaaatgg tacttgccat tgggcttggt      3180
     gatcaaccca aagaawccac agaaactgcg tttgatttgg gatgccgccg ctcaagtgaa      3240
     cggtgtatca cttaactcga agcttctatc aggccctgat atgttgatgc ctctaacgag      3300
     tgtgcaatat cgattcagac agcgacgggt ggcaataact ggtgacatta aggaaatgta      3360
     tcatcagttc aagatcttac aacaagatca aaaatcacag atgttcctgt accgtaaaga      3420
     tccatcagaa gagccgaccg tttatttgat gaccgtggga attttcggag ccgcatgttc      3480
     accatgttcc gctcagtaca tcaaaaacct aaatgcgaag gaatacgagc aagactttcc      3540
     agacgcagcc gaagcaatag ttaaaggtca ctatgtggat gattttctag acagtcgaga      3600
     ttctgtggag gaagtcctac gtttggcaga agatgtgcga tatgttcacc agcagggagg      3660
     gtttgaaata agaaactttt cctccaaccg cccggaagta atctctcgtt tgggagagca      3720
     atgtacgtca gctgttaaga tgtggagttc agagtctgat gtggcagaat cagtgttagg      3780
     aattcgctgg ctgccaaaaa ccgatgaatt aactttctct gcatatttgc ccagtgcagt      3840
     agagatctac tagatggatc cgttcgtccg acgaagcgac aagttttgaa gaccgtaatg      3900
     agcctgtatg acccccttgg atttctcgct acgttcgtca ttcaaggaaa gataattatc      3960
     caagatcttt ggcgcagtag ttgcggttgg gacgaccagg tagatgatgc agttttcaac      4020
     gattggcagc ggtgggtaaa tcttctgccg aggttgaacg atgtcagagt cccaagagcg      4080
     tatttcggag atggtattcc agaatgttgc caacccatac agcttcatac gttcgtcgac      4140
     ggaagcagca ctgcttacgc ttgtgtagta tacattcggt ttgtccaggc tggacaacct      4200
     cgttgcacgt tagtgggagc gaaagcgaag gtcgcaccga taaaaactct gtcgatccct      4260
     cgactggaac tccaagctgc tgttcttggg actagatatg cacagttcgt tctcgagaat      4320
     catcaaatac caatccagca acagttctat tggactgatt cgtcaactgt tctccattgg      4380
     atcaattctg attcccggaa atatcgaccg tacgtggcat gccgaatagg agaaatcgta      4440
     acaactaccg atccaaccga atggatgaaa gtaccgtcag caataaacgt agcggacaaa      4500
     gcaacgaaat ggggcaacgg tccatgtttt gatcctgaag attcctggtt ccgaggtccg      4560
     caattcttgt ggagtgcaaa ggaatgctgg cctgttcaaa attggagagg cacagaagct      4620
     acagaagagc tacatcctgt acttattagt cgtcatgtat tcaacgagcc tgtaattgac      4680
     gtgtcccgtt tttccaaatg ggaacgatta ctgcgaacgg tagcgtacat cctgaaattt      4740
     ggaagtcatg agaagagtcc atgttcggag gtattggtca actcacagct tctacgcaag      4800
     gccgaaatta agttgtggaa aattgtgcag tcagaagcgt ttcccgtaga gctgacagcg      4860
     atgcagaaaa cagattcaac aaagccttcg ggagcggtgc cggtatcgag cccgttatac      4920
     aaattgtcag cctttgtcga tgaggaagga ttggttcgaa tggatggtcg tatcggcacc      4980
     gctcccaatt tgccgactga agctaagtat cccgttatac tagctcagaa ccatccagta      5040
     acctttcttt tcgtagatta ctaccatcgc cgatatcttc atcgaaacca ggagactgtt      5100
     gtcaacgaac ttcgacaggt ggtctacata cccggcattc gacgtttggt tcgcaaggtg      5160
     gctgcaaggt gccagacgtg caaggtatac aacgcatcgc tgaattctcc aaaaatgggt      5220
     ccacttccaa gggccagagt tgaaggattt gttcgagcat tcacctatac aggtctggat      5280
     tattttggac cgatgatcgt gaaggtcggt cgcagacatg cgaagagatg ggtggccctc      5340
     ttcacgtgtt tgacaacccg agccattcac atggaggtgg cccatagtat gtcaacggaa      5400
     tcctgcaaga tgtgtattcg gagattcatc gcgaggagag gtgctccggc ggaaatttat      5460
     tccgataacg gcaccaattt tcgcggtgcc gctaacgatc tccaagaaca aattcaacgg      5520
     gccaaccagc aatgcgcaga gacgtttacg aacaccacaa caaaatggta tttcaatccg      5580
     ccagcggcac cccatatggg tggggtgtgg gaacgactcg tacggtcagt taaggttgcc      5640
     ctacagtcgt tgaactccgc gccaagagta cctgatgatg aaacttttga gacgatgatc      5700
     ctagaggctg aaagtatgat caattccaga cctcttacct acattacatt ggattggtcc      5760
     ggtcaagaag cattaacacc caaccatttt ttgttgggca gttcaaatgg agtgaagcaa      5820
     ccacctgtag agccgacacc gtcatctgac tgtttgcgaa gcaactggaa cttgattagg      5880
     catgccttgg acggattctg gaccagatgg gtacgcgagt atttgccaac cattaccaga      5940
     cgcactaaat ggttcaaaga tacaaaacca atagaagtcg gtgatctggt cttcgtcgct      6000
     aacgagcaga aacggaatac ctgggttaga gggcaagtca ttgaagtcat ccgaggtaag      6060
     gacggggtta ccagacaggc aatggtgcgt acagaagctg gagtcatccg acgtcctgca      6120
     gtgaagctag ccgtaatcga ggtaactgga aacggtaagg tagcagcctg tgaagatggt      6180
     cagtctcaac cttacgggtc ggggaa                                           6206
//
ID   BEL-870_AA-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-870_AA-I;
KW   BEL-870_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-359
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-359
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3001-3001 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 359 BP; 134 A; 67 C; 61 G; 97 T; 0 other;
     tgttggtact gcgctcaact attcgcagtc cccttgacct cgtaacggac agatgaaagg        60
     aaaactgact accctattgc tgaccgtcaa cgtgacagcg acgaaaatgt caaaagacac       120
     gatgatagaa gagaaaagct tgtttatcag ttaaacgtgt gcagaaatcg tattgctaaa       180
     attgaattac aaaaatatta ttaaaaacta ttgaaatttg cttaaacact aaatgtgagt       240
     acttatatct actatataca tgcaacctaa actaaataat aaaaatttac agcttaaagc       300
     tagttaaact acgctaaaca gaggtgtttt gattcctaac cctagttgca gcggcaaca        359
//
ID   BEL-871_AA-I repbase;    DNA;    INV; 6127 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-871_;
KW   BEL-871_AA-I; BEL-871_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6127
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6127
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2979-2979 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6127 BP; 1803 A; 1446 C; 1483 G; 1395 T; 0 other;
     caatttacta atttcgttta cgcgagcgat gtcgggtcgt aaaagtggta aagacggtaa        60
     aagcggtcct aaaggtgcgc ggccgaagga aaaacactca gacgctgtcg agaatagtgg       120
     tgaagccaat attgtggtgg tggtcacgga tgaaggagtt gatacgattg gacatcataa       180
     gggtcgcggg catgttccag aacaaaactg cacattctgc caggagacgg ataatgacaa       240
     gatggttcag tgcgacaaat gtgatagatg gatccacttt gggtgtgtag gcgttacaga       300
     agaaattgcg gataagagct ggagttgtcc caaatgtgtt aacacaaccg ggattcagca       360
     gtcctcccct tctgccataa atcgtctatc agccgggaca tcgcatcgcg caggacaggg       420
     aaagtcagcc tctacgaagg aacagttcgt ctctaagggt acaattgagc ctggaatgaa       480
     tgcacgtcgc aatccgctgt ctgacccaat ggcaaagacg gtccctactt atggagccat       540
     gagtcgtgat aaaacggccg cttcgctggc ctcttcgtca tctcgtagat ctctattaca       600
     attgcagctg caacggcttg aggaggaacg cgaatatgaa aaacaacaag cggagaagca       660
     tcgggcttac ttggaccgga agtacgaatt gctggaacag atgaacagcc aaaccggatc       720
     tgactacagc ggatcacaag atcgagttag acagtgggtt caagatacga acattcgtat       780
     ggaagatgca gttgatcccc ggatcgtaga agtcttcgat ccacagagac attctacgaa       840
     aaactactct gcacaagctc ggataggctc tactccgctg gcaaatcagt tccgccagat       900
     ccggatcaat gatgaagact taggaatgcc ctgtgcttct caaggcgaac aacctgttca       960
     accgtcatcg ataagaggtt ttacacagtc atatagacaa cccactcgtc agccaagaag      1020
     aacctttgaa ggagcaggtt tttcaacgga ccgactagaa gaagattttg aaccttgttc      1080
     gttttcccga cagcagttgg cagcccgcca aggtatctcc aaagatttgc ccaagttttc      1140
     aggcaaattc gaggaatggc cggtctttat gtcaatgttt aatagcacga caaatatgtg      1200
     cggctttacg aacgaagaaa atctcattcg tctccaaaaa tccttagaag gaaaggcgta      1260
     tgaaacagca cggagtctat taatgcatcc gtcgaatgtt ccagcaatca tgcgcactct      1320
     gaaaatgagg ttcgggcaac ccgaagccgt tgtccactct ctgattcaaa aggataacgc      1380
     tcttccagcg ataagagagg accggctgga gacgttagtg gagttcgcag tgaacgtgca      1440
     aaatttctgc gccacggtgg acgcgtacga gctagaggat tatatgtaca acgtttctct      1500
     tctccaccag ttggttagca agcttccggc gactttaaag ctagactggg ctagacatcg      1560
     acaaacgctt cagcgggtca acctggcgac ctttgggaat tgggtatatt ccctggccga      1620
     ggcggcaagt accgtcgtaa tccctgtcga ttcaaacgaa tcaaagccat cacacaatga      1680
     aggacggggg agtaagaaat cgaatgcatt ccttaatgcg cattctgaga cactctcgga      1740
     agcaacaagc cgtcaaaaat ccatgacgta cagttcagca ccctgtggaa gtagccaagc      1800
     gtcagtctcg aagcagcaat ccgatgtctg tgttgtctgt ggaggagaat gcgaaattgc      1860
     ttccaaatgc aaacattttc tggagttatc tcgtgaatcc agatgggccg tagttaaaga      1920
     attcaaactc tgccgaaatt gtttacgccg gcacaaagag ggatgcgacg ctaaactatg      1980
     cggtcggaat ggatgcactt acaaacatca tgagctactt cataacgata agacaaacca      2040
     tcaattcctc aaccaaacaa cgcaattacc atctacctct ccagaaaagg ttggcagacc      2100
     tccggcatcc gttgcggaag taccaacgca cgactgcaac actcaccaag cgaagtctaa      2160
     tgccgtgcta ttccgctatc tgcccgtggt gctcagtgga cctcaaggtt ccatccatac      2220
     ttatgcgttc ttggatgaag gttcccatct tagcctgata gatcaagaat tggcggacca      2280
     acttaagctc aaaggtgcca cgatacctct atgtctccgt tggacggggg gaacgcagag      2340
     atgcgaacga gattcgcagt ctgttactat tgatatatcc ggaacaagta gagcggccaa      2400
     aaactatcaa ctagctggag tgagaaccgt tgaagagcta ctgctgccac atcaaaccct      2460
     caaggtagag gatttggaac agcaatatcc gcatctgaag ggactcccta tcgattccta      2520
     ctacgatgct cgcccaagaa tattcatcgg catgaagcac gtacaagtca gccttgtctt      2580
     aaaaagcaga gagggaaaca ttggtgagcc agtagctgtt aaaacacgat taggttggac      2640
     agtatgtgat ggaggtaatg caaatgcaga taccatcgac aaccttgtag actatacttt      2700
     ccacgtatgc tcatgtgagc ggacgcgaga tgatgagctg catcaggccg tgaaaaatca      2760
     ttttgcgctg gatagcgtcg gcatcaccaa accagaaaat cttctcctct ccattgatga      2820
     tcagcgatct caggacctct tgaagcaact gactacctac gatggagagc gatacacgac      2880
     cggactgctg tggcgtcacg ataacgtccg cttaccggaa agctacacca tggcattaag      2940
     aagacaccag tgcttacaaa agcgccttac caaagaacca gaattagcga cgactttgca      3000
     aacaatgatg atggattacg tctccaaggg ctatgttcga cagctttctg aagctgaact      3060
     cagtcagcgg tttcctagaa tttggtacct tccggtattt ccggttgtaa accctaataa      3120
     accaggaaaa gttaggcttg tttgggattg tgcagcatgc tcattcggcg tttcgttgaa      3180
     ttccaacctg cttaaaggac ccgatcagtt gtgttcgctg ctgtctatct tgctccaatt      3240
     tcgagagaat agagtgggcc ttaccgggga catccgggaa atgttccacc aggtacgcat      3300
     tctgagtgaa gatcaacagt gtcaacgctt tctatggtgg aatgaagaag gagaaattgt      3360
     ggtctatgtg atgcaagtca tgacttttga agcgtgctgc tcacccagct gcgcacaata      3420
     tgtgaaaaac atcaatgccg agcgtcatgc aacacaacat ccaaaagcag ccgaagtaat      3480
     tcagaagaag cactacgtgg acgatatgct ggttagtcta gaaaccgaag aagaagcagt      3540
     tcgaatggca aacgaagtga aatacgtcca cgatcaaggt ggatttgaaa tccgtaattg      3600
     gataagcaac tcatcagcag tgctaagagc cataaatgga aagggaatag acttgatgga      3660
     cgagaaagac ctggacttgt caccagagat aagcaccgag aaagtcttgg gaatgtggtg      3720
     gtgtaccaag tcagacacat tcacgtacaa ggttggatgg aaacgatacg actgtgacct      3780
     cctcgagggc caaagacgac caacaaaacg agaagtgttg cgggtattga tgtctatatt      3840
     tgacccactt gggctgatcg gacattttct gatgttcctg aaggtgcttt tgcaagaggt      3900
     gtggcggtcc ggtgtgcagt gggatgaaga tataaccgac gatgcataca taaagtgaaa      3960
     acactggctg aagatgctgc ctcaagtaga acaagttcaa gtccccagat gttataggtc      4020
     gctatcccag gatcccgatc aggaagcaga acttcacata tttgccgatg ctagtgaaag      4080
     tggaatgtcc gccgttgcat ttctgcggtt taacaaggat gaaaccatcg gatgtaacat      4140
     cgttgcttca aagacaagag ttgcgccact aaagtttgtt tcaattcccc gactagaatt      4200
     acaagccgca gtagttggag caagattagc caatacaatt acagatgccc tgtctgtgaa      4260
     aatatccaga aagtactatt ggaccgactc tcgtgatgta ctatgttggc tgaactctga      4320
     ccaccgacga tattcacaat ttgttgcttt ccgggtcagt gaaattctgg agacaactga      4380
     agcaaaccaa tggcattggg tgccatccaa gatgaacgtg gcagacgacg gcaccaaatg      4440
     gagctctacg cccgatctca caccacacag cagatggttt gttggctcag aattcctgtg      4500
     gaaacgtgaa acggactggc cacaacagct caagaggaac atatctacag aagaagagct      4560
     tcgccccagt ctacttgcga accatgttcc cagcgaacct atgataaacc cccatgacta      4620
     ttcaagctgg aagcgtatcc tcaacgtcac cgcctacgtt atacgattca tagctaactg      4680
     tcgtcggaaa atgcgaaagg agccgacaac cattggattg ctaacggaat cggaactgat      4740
     ctctgctgaa gctcatcttc ttcgagtcgc tcaacgtgat ggatatccag aggaaattgc      4800
     ccatttagag aaatcacgcc agaactccag cttcagaacg ataccgaagc agagcagtct      4860
     gtaccaatta actccatggt tagatagcaa aggactaatg tgaatgcgaa caagaattgc      4920
     ggcctgtcac tacgcaacag aagacgccaa gcagccgata attctaccac gtgaccatcc      4980
     catcaccaat ctgataatag tgcattatca tcgacaattc caccatcaga atcatgaggc      5040
     agtgatcaac gagctccgac agaaattcac cattccacac atccgtgctg catatgccaa      5100
     ggtgaagaag aactgccaaa aatgtaaaat cgatcacgct aatccacgtc cgccaatcat      5160
     ggatgatctt ccacaagctc gactcgcagc gtactcaccc cctttcacgc acacaggaat      5220
     cgattatttc ggaccatacg aagtagctgt tggtaggcgt acggaaaaac ggtggggaat      5280
     gctcgcaaca tgtctaacag ttcgagcaat tcatatagag gtcgtacact cattgagtac      5340
     cgattcctgc ataatggcaa tcagaaactt tattgcacgt cgtggtacgc ctagtgtaat      5400
     ctacagtgat agaggaacaa atttcatcgg tgcgtctcgt caaatgaaag aggccgttgc      5460
     gaaggttaac gtagatgagg tgatgaagga gttcgttacc gttgatacag catggtcctt      5520
     taacccaccc ctagcgccac atatgggcgg gagctgggag aggctgatag gtagcgttaa      5580
     gcggaatctt caaacgatca atccttctcg aaaaccgacc gatgaagttt tgcgtaatct      5640
     ttttatcgag gttgaaaata taatcaactc caggccacta actcacgttc cagtagacga      5700
     cgactgcgca cccgctttga ccccgaacca ctttcttctt ggttcctcta acgggatcaa      5760
     accattctcc accctcgacg atagcaaaac cgctctccgt cagaacatcc tagtctcgca      5820
     ggtactagcc aacacgttct ggaagcgttg gctaagcgaa gaaatcacca aacgatccaa      5880
     gtggttcgag cgaacggatc ctgttaaaga aggcgacgtg gtagtgataa ccgacccaaa      5940
     acttcctcgt aactgctggc caaaggggaa agttatcgca acccatccag gtaaagacgg      6000
     cgaagttcgt tcagcaacca taagaacgtc tactggagtc tacgttcgtg cggttaccaa      6060
     actggcagtc ttagacgtcg ggcgcgaagg aagtaagcca gtctgatcgc tggcgtacct      6120
     gggagag                                                                6127
//
ID   BEL-871_AA-LTR repbase;    DNA;    INV; 765 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-871_AA-I;
KW   BEL-871_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-765
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-765
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3002-3002 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 765 BP; 269 A; 156 C; 130 G; 210 T; 0 other;
     tgtggactgc cctattggac agcacgcgcc ctttctgata gtgcctcaac agcatccctg        60
     cccctgcggt tctagcaaca ctggtaaaga gtgacagaac gaccgtctgt cactgtccgt       120
     gagtacagaa ggagaaaaag aaagctatta gcgaagtata tacacgttga gtttattagc       180
     ttgatactta atctatttat ggtgataact taaaatctac tgctaaacta attgaattat       240
     taattgcgct gcgaggtaaa ctagaatcta ttataccaga tcttaaaact aattagaact       300
     acttattata acctaaaaca accaggcaaa gcatcctaga cgagtgtcta atctaaaagt       360
     gtacctttca aatcaaacgt tgaacttaaa ccggtaaggc gatgaaaaac tatgaaattt       420
     cttccaaaat ttaagtacat gttattgcag ctccgttata acagtaaaag acccctacta       480
     cccgctgaat ctgaactagg ggaactaaac gtaagtgttg atcaacagta tctattatat       540
     aatgttctca gaacaaaatt tgttaactgt ggcctacata actgaaatta tgaaactaat       600
     ctctgaaata tttatacaat tttgtcacac ttgcacagga aattagtaat ctcccaaata       660
     aagagccaat taaacaatcc ctgctctgga ggttaccgaa acggaagaat taccctatca       720
     gtcaaagtca cgaatcgtaa atctcggtcg aagcaaactt cgaca                       765
//
ID   BEL-872_AA-I repbase;    DNA;    INV; 5833 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-872_;
KW   BEL-872_AA-I; BEL-872_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5833
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5833
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2980-2980 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 5833 BP; 1668 A; 1310 C; 1340 G; 1515 T; 0 other;
     tatggtcctt cgaaccggat cttggactcc ggagacactt gaagatttgg atgacgattc        60
     cgtaaacgcc gcgaaggtca cgctctgcta gaaaccgcca catcgaagtc accggcaatg       120
     aggcctattg tctgtgaaat acaataagta acgaatccat cgtggaacgt tggaaacgcg       180
     gaacagccag gctactctgc gccatttgca tacaacaact tatacacgat tacgccattg       240
     gacacactac tcacctaaga aaagattgac aatttggaca tcagttggtt atcggatcgc       300
     ctgcccactg agactcactg agtcagcggg acttcctggt ttcacaggta agctttgaac       360
     tcagtatatg tcttagccga agccaatacc ggattgatgc taattctacc atttcgactt       420
     gccctttttt ccaacggttc gtgaaactca aatattgaat gaacaacgag tgagactgga       480
     tcgcaatcaa tcaaacatct acgtgaggac tattcgtgct gattggagcc gaacgggatt       540
     actacagcca actgctgtga ggcattatcg acgaagagga agcgcaaccg tatttctggc       600
     caggtaattt acacttagca gtatatgtca agaagctagg gccaagatat acacaaaatt       660
     aaattgaaat tatcctcttc gaacgattgt gcgtacacct cattggtcga gctgattcat       720
     ggtagtttga ttggattcgg accatcgatc caccggtcca tttggatcac tcgcgattgg       780
     tttggatttt cgctgaagct attaccctac aggttggcct gcgttgctgt cagtttctcc       840
     aggtgaggct acagtatatg gccagccgtg gctagagtat atttggtact acataatcgt       900
     tattcttcct ctttggtgca acgtgtgact gttcattgga agtcgttcac aatggtttat       960
     catgtgctgc tgtgctaata ggatcgttta agcttatggg catcgtgtag ctgtatttat      1020
     taccaggtaa tttacactgg acagtatatg ccctgctgaa gctaggacct attgcagtag      1080
     tctacatcgt atttctttgt atttacaatc taccacttcg agtgtaccat gccaccaaca      1140
     acgaaaaggg aatcgacatc catgaaggtg ttgatgacca aattcgaaga gtaccagagc      1200
     gctttcgacg atatttggga attcgttgag gacattccag ctgacgttgt tgcgtttgat      1260
     atgtccattc gtttcgagcg ccttgacgag ctgagagaga agatcgagga gaccgtcatc      1320
     gaagtaaaat cgcatgacag ctacagtgaa gagaggtacc cactcgacga caagagaaag      1380
     gatctcagta ttcgtttcta caagatgaaa tccatactta tggagcaact caaacaactt      1440
     caagaacccg caactgtaat ggagcggtcg ttccgtgggg ccgacacgtt agtagggaat      1500
     agcttagatc atgctcgttt accacagatt aagttacagg ctttcaatgg ggatatcaat      1560
     gagtggctta gtttccgcga tctgttcacc tcgctaattc actggcgaac agatttgcct      1620
     gaaattgaaa aatttcatta tttaaagggt tgtcttcagg gtgaaccaaa gagcctcata      1680
     gatcccatcc aaattaccaa aaccaattac caggtagcct ggaacttgtt agttgagcgt      1740
     tacagtaata gcaaacaatt gaagaaacgg caagtgcaaa cgcttttcga tttgccagtt      1800
     cttggaaggg aatccgtagc tgatttgcat aaattcgtag acagttttca gcgagctgtc      1860
     caaactctcg accagatcat tcaaccagca gattataaag accttctctt aatcaatcta      1920
     cttatctcac gtctggatcc tgtaacgaga cgaggctggg aagaactttc atctagcatg      1980
     gatcaggaaa ccctaaagga tttgaccgga tttcttcagc ggcgcattgg ggtgctagaa      2040
     gcgttacctt ctcgatcgtt ggatactaag ggaacgcaaa gagctgcaac ttcaacgtta      2100
     tcagcgaaac cgagaccaac gatggttaaa accagcttca atgttgtcca agaagacgtt      2160
     aagagttgcg ttagttgttc agctgagcat ttgctttttc aatgtccagt atttcaacgg      2220
     atgtcgtcgt ccgacaaaga agcgttgtta cgtgctaaag gtctttgtcg taactgcctc      2280
     aaacaaggcc atcaagcaag ggattgtcgg tccaagttct catgtagacg gtgtaaggga      2340
     agacatcata cgctagtctg cttcaaacct gaaagggaca tcattagcgg tgcaggatct      2400
     accaaaactt ccagcaatga atcctcacat cctcctcaag aagcattagc acctactctt      2460
     tctcaagttt ccaacgtggc gacatctgat gatacagttt cggtttcgac ccgcagctac      2520
     tcttcgcaag cattattagc tacagcagtt gtgatcatcg aagatgacta cgggaaccgg      2580
     tatccagcac gagctcttct cgattcggga tcagagagta actttctcac tgaacaaatg      2640
     agccaacgat tgaaggtatc tagagatgct gtagacattt cggtatttgg atttggacaa      2700
     tcggcgacta aggtcaaaca acgaatccga acggtagtgc gatcaagaat ctcaagctat      2760
     tctcgagaac tcagcttttt aatccttcga aaggtaactg cgaacctacc taccactctg      2820
     atcgatccaa caggttggaa aattcctgat gggatcgaac ttgcagaccc gacattcttt      2880
     atatcaagaa ccgtggactt agtgctgggc attgaggcat tttttgaatt tttcgagacg      2940
     gggcagcaac tatcattggg tgatcagcta cccatcctag ctgaatccgt tttcgggtgg      3000
     gtcgtttgcg gaggtacagc actatcaggt cagatgccaa ttacgtgcca tgtatcgaca      3060
     tcaaaggatt tggagaagat ggtggcccga ttttggtcct gcgaggaaat cgagccacca      3120
     aggacatatt caccagagca aacccgctgt gaacaacttt tctcaagcac atttcaacgt      3180
     gacacagatg ggagatatac tgtatccatt ttaaaggatg gagacgactt caaggcttta      3240
     ggcgagtcaa gagaaatcgc ttttcgacgt ctccatggca cggagcgaag actggttagg      3300
     gatgccagac tacgggaaca gtatacatca tttatggatg aatatttggc actaggacac      3360
     atgcagcgag tagacgatat ccgcgatacg gtaaagcgtt gttatttacc gcatcatcca      3420
     gtggttaagg aggctagcac caccacaaag gttcgcgttg ttttcgacgc atcttgtaag      3480
     acgtctacag ggatttcatt gaacgacacg ctacatgttg gtcctgtgat acaagaagat      3540
     cttcggtcca ttgttttgcg ttgtagaaca agacagatta tgctggtgtc tgatattgaa      3600
     aaaatgtttc gacaaatcaa cgtcatacaa gaagacagac ccctccagtc catactctgg      3660
     cgaaaacacc ctaccgaaga aatagcaacg tacgagcttg gtacagtgac gtacggtacc      3720
     aaatccgcac cgtttttggc tacacggaca ttgcatcaac ttgtgaagga tgaaggccaa      3780
     gatttcccac tggcagcgaa ggctatcgtc gaggacacgt acatggatga cgtgattaca      3840
     ggtgctgata ccattgaaga ggcgacagat ctgcggaaac aactcgttga gatgttacga      3900
     cgtggaggat ttcgtctacg aaagtgggct tccaacgaag gagcaacctt acaaggactt      3960
     ccacaacaag agctagcaat cgcagattca accgaaatcg ggcgtgatca ggatccctca      4020
     gttaagacac tgggacttac ctggatacca tcaatggatg aatttaggta ccaattcaac      4080
     attccactcc tagaatccaa cgaatcaatt accaaacgta ggattttggc atcggtagct      4140
     agcctgtttg acccttcggg gctgttagga cctacgatca ccgctgcaaa aatttttcta      4200
     caagaactgt gggcatggcg aagcgatgaa ggggataaaa tcgattggga tgaacccgtg      4260
     cctttaatgg tgggcgagcg ttggcgccga ttccatgaaa aacttccgat attaaatgac      4320
     attcgtatca gtcgatgcgt aattattcct aaagcagtat cgctacaact acactgtttc      4380
     tcggatgctt cacaaaaggc ctatggaggt tgtatcttcc tacgaagtca gaatgcagaa      4440
     ggtagaacat ccgtcagttt attggcctca aaatcaaggg tggcaccttt aaagtgtcag      4500
     acaatacctc gactggagct ttgtggagct ttactcaccg cacagctttt cgaaatcatc      4560
     cagaagtcca tcaaaatcga catacctaca tttttctggt cagattcgac ttgcgtgctt      4620
     cgttggcttc aggcttctcc acatacctgg actacttttg tggcaaacag agttgccaaa      4680
     atccaatccc ttacggaaaa tttccagtgg cgacacattg cgggtgtcca gaatccagca      4740
     gacttgattt cacgagggct ttctccggaa gatttgattc gaaactacgt ctggtggcat      4800
     ggtccaaggt ggctaatgga agacgaaagc aaatggccaa ctttaccgga gtcattggat      4860
     gagggtgatc atctcatcga gacacgtaca aaaacagtag ctgcaacaac tgcaacacca      4920
     tcaccgagct ttattgattg gtatatcaac agattctctg attatagcag cataatcagg      4980
     tgcacagcga tatggaaaag gtagataagg cgtttgcaac atcgctcggt tgagcaaact      5040
     gtagtttgtc ttacggcttc agagcttcga gaagcagaaa aatgtataat ccgcctggtc      5100
     caacacgaat cattttccga agagtgtgct tcactatcac atcgaaaaca ggtttctcga      5160
     aaatcaccat taaggtggtt caacccctac ctctctgaag atcagctatt acacgttggg      5220
     ggtagactcc accattcgga tgaacctgag cagaccaaac acccattagt attaccagca      5280
     cagcatccat tcacacgcat ggtttttgaa cattaccatc gcattctgct gcacgcagga      5340
     cctcaattgt tgctctacat gatttgccag aacctgattg gcatgacgtg cctacaagtc      5400
     gtttgaacct tttccaacat ctgcaacaaa aatgtcaaca gttttggata cgctggcgca      5460
     gagaatatct gtcccagctt caaggccgca ctaaacgatt cggcccaagc gcaaaaataa      5520
     aggttggcga tctagtggta atatgcgaca aaaacttgcc acccatgcga tggaagatgg      5580
     gaaggattgt ggaaactcat cctggacttg atgaaatcgt acgcgtgacg cttaaaacga      5640
     aggatggatt tcttaaacga ccagtggaag gaatctgcat gctacccaaa tttgatacca      5700
     tggaagtctt cgatcattca gaggttccat ccaaacccac acaagaatca tgacgtcacg      5760
     atcgctcgaa gaggaagcgt ttttttttct tatttcgttt cagaaatcgt agtaatttca      5820
     gggtgggtaa gaa                                                         5833
//
ID   BEL-872_AA-LTR repbase;    DNA;    INV; 632 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-872_AA-I;
KW   BEL-872_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-632
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-632
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3003-3003 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 632 BP; 194 A; 115 C; 159 G; 164 T; 0 other;
     tgtttggaga tgataaccca catagctaaa accctgattc gagacatacc gacggtcagc        60
     acaacaatag ccggttttct ctatcgccgg gtcgcattcc acagtttgtt gtgtctggcc       120
     tattgttcgt cagacgttgc agagtatcat agatcctctg cacatagcca gccgaggtgg       180
     accataacaa attggaatga tgaagagaag ccgagggaat gattagatgc gaagagatag       240
     gtcaactaga acccgatgac gtcgttggtt gagttaccct caagaaattg agaggattgt       300
     tcaggcaggg ttttattagc agaatgagta aaattgaatt tagtcacgaa tcggtcgtca       360
     ggcaataagc acagtaacga caataaatgt gtagtgtagt cttagttata agttaagcaa       420
     taaatgtaga tggccagtat aataaatgta gtttgagcgg tacaaataaa gtgtttgtga       480
     agcgtgtaac catttaaaca accctgtgtt attgaacgga gcaagcttga aaccccagga       540
     tcatccaagt ctatctcagt gttggcgttc tgacgatgtg catgcagttg acggagatcg       600
     aaggtgaagt ttagttggca caggacccaa ca                                     632
//
ID   BEL-873_AA-I repbase;    DNA;    INV; 5863 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-873_;
KW   BEL-873_AA-I; BEL-873_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5863
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5863
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3177-3177 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(618..1883,1883..3283,3262..5862)
FT                 /product="BEL-873_AA-I_1p"
FT                 /translation="MSTPEPEHTAGSSEEVTVNRAVEEPVYVIQSEHERVT
FT                 VQRNHAITRIANIIETIAMFESDVMLLKTRRDMLRECYKNFDQAQNLLEQW
FT                 CADEAQNRDAVEIQYVSGLALFDKTIASKKMNAETRNSGDMVRLPAVDLPT
FT                 FTGANENWLEWFDKFNALIHRRTTLEVIQKFEYLKLSLRGPALGLIDSLPT
FT                 IEANYPVAYDLLVSRYNNPKLLVQKHTRELFELEPVHVESAQALRNLFDGA
FT                 RKNLRCLQILKQPVESWDAILVYQLANKLDPVTRREWESAASGSVPPTYNQ
FT                 LETFVLGRCQMLDAIPVKRKAPQEIGTLKRPKLETRSFTATTLTRRQGCAA
FT                 CDKDHFIGHCHRFGEKSTEDKVKIIKRFSLCFNCLKPKHTADQCHSRGCIK
FT                 CGRKHHTSIHREPQSETSQGRTRYEKREVIETADNFVTYNFTSLFLLINLS
FT                 DLKHDLHHLSTQSILPTASVLVFCDNGSPIMCRVLLDSGSQSNFATTSLIR
FT                 RLGAKTAYTKISIMGFGQNVRSVSEKAVITFKSRTSTYQSTVHVLVTDQIT
FT                 GMLPPSDLDVSSWQFNEVTLADPEFCLSRPIDMLLGISVMFDILRNGNIKV
FT                 AENMPSAQNTSLGWLIGGSVKRMSSSDKLNSFFNDRTNSLVAREWTEEEEL
FT                 CEQIFAKTTTRGENGKFVVRLPLKPNAQELGESKSMALDRLLKLEMRFARN
FT                 PSLQHDYTAFMQAYLDLGHMEKVSEASLQRGQPVFYFPHHPVLKPDSSTTK
FT                 LRTVFNGSATTSSGVSLNDNLMAGPCIQNELLHILLRFRCPTFVLTADIKK
FT                 MFRQIEIHEDDRQLQLILWRFSPEDEVSTYCLKTVTYGTRSAPFAAARCLK
FT                 QLALDYAHVYPEAAEVSTINDMHTDFCNKHSIIFDRTFNYFRQVIETDFYM
FT                 DDALTGHDDQERLLEIKQQLITILSSAGFELHKWTSNIADDQNEDQEPDNT
FT                 KILGLRWNPRTDMFSFSNEIISGIAVTKRNVLSEVQKVFDPLGTLSPIIIH
FT                 GKILMQDIWSEKLDWDEPLPPLLADQWNRFLVQMNELSKISFQRHVKTKGH
FT                 ITELHGFSDAAKRAYGAVVYVRTVDEHGVQVHLFCAKSRISPSSEQSNKED
FT                 TTIPRMELRAATLLVELMETVKAALKVPMHSIHYWTDSMVTLDWINKPEHR
FT                 WPTFISNRVKMINQKTSAHCWHHVRSKDNPADLISRGVNTKKLSNSDIWWS
FT                 GPSFLQEHSQPWIQEPIRILTTEINEQKDQEQLEDHKGVLEKCDTMLLDRF
FT                 SCFGKLQRVVAYILRFIKNCRNKQQTAAKPKWLSVHELEAAHTQIIRMVQQ
FT                 RYFAQEIKDLRKNGCVSNNSSLITLNPFIDDNELMRVGGRIQAAGVSYDQQ
FT                 HPIILPPKSNVTQLIAVEHHRKNLHVGPQGLLYAMRLKYWPIHGKQLARQV
FT                 VHRCIICFKTKPKTLRQIMGQIPRARLNPARPFQICGVDFGGPFIIKENFV
FT                 RTQKTLKVYVALFICLSTRAVHIELVSGLSSECFIAALRRFSSQRGRSSII
FT                 HCDNGTNFVGTKNELDNMTAKFEQEVAPNIRSFCATEGIEWKFIPPRAPNF
FT                 GGIWEAGIKSVKHHIKRVLGTNIPTYEEMLTLLKQIEGCLNSRPISPMSAD
FT                 PSDISPLTPGHFLTGGPIIALPDKDVTEVPTNRLKRFEEIQKRLQLFWKRW
FT                 RSEYLNNVQQRTKSLCSSQPNLLIGQLCLIKDDNLPPLSWITGRVVQVHPG
FT                 PDGIVRVATLRTINGELKRCISKLCLLPLEECGGGS"
XX
SQ   Sequence 5863 BP; 1879 A; 1228 C; 1297 G; 1459 T; 0 other;
     tttagtggtc ttcgaaccgc ggataccagg taaaagttga ttttatattt caggacttaa        60
     attgattagc tcaattcatt tgatggcgat aaattatagc gagtttgtgt gaagcgacat       120
     gcgggtcgta aaagttccat actattgaga gagtgatcga cacaagggtc gaattcaaaa       180
     tggcgagatt taagaaactg tgtcattgaa gcgacacgag ggtcgcattc gaaaatggca       240
     ttcttaaaaa gaaaataaat ttaaaaatat tttccgacac gtgggtcgca taaaaaatgg       300
     cgcttcatgt gggaagcaac aaaaaaaaga gaacaacgat tatacagtgt tggaccgaca       360
     taagggtcgc gatccaaatg ataattccta aaactgaaga taataaaaaa agagttgagt       420
     cacaaaatcg atcggattgc attcgctctt agtgtacaag gcatttatga taaatcagaa       480
     atttgggtta gaactttata gagaaacaac cgttcttata aaaatgagct aatcagaatg       540
     acgtatgaag tatctatttg agaaaataaa atggcgagtt gattaaatat attgaattta       600
     tctttataga cataaccatg tcaacaccag agccggaaca cactgcgggc tcgtcggaag       660
     aagtgacagt taatagagcc gtagaggaac cagtctatgt gatacagtcg gaacatgaac       720
     gcgttacggt gcaacggaat catgccatta cgagaattgc aaacataatc gagacaatag       780
     cgatgttcga gagcgacgtg atgttattaa agactcgacg tgacatgcta agagaatgtt       840
     acaaaaattt tgaccaggct cagaacttgc tagaacagtg gtgcgcggat gaagcgcaaa       900
     atcgagacgc cgtagaaatc cagtacgttt ctggactcgc attgttcgac aagaccattg       960
     ctagcaaaaa gatgaacgca gagacgagga acagtggaga tatggtacga ctaccagcag      1020
     tcgacttgcc gacgtttacc ggagcgaacg agaactggct tgaatggttc gacaaattta      1080
     acgccctgat tcaccgacga acaacgctgg aagtcattca gaaattcgaa tatctgaagc      1140
     tttcactacg aggccctgca ttaggcctaa ttgactccct tccaacaatc gaagccaatt      1200
     atccagtggc ctatgatcta ctcgtgagcc gatacaacaa ccctaagtta ctggtacaaa      1260
     aacacacacg ggaactgttt gaattggagc ctgttcatgt ggaatctgca caggcattga      1320
     ggaacctgtt tgatggagcc aggaaaaatc tgcgatgtct ccaaattctc aagcagccgg      1380
     tagaatcatg ggacgccatc ctagtgtatc aattggcaaa caagcttgat ccagttaccc      1440
     gacgagaatg ggagtcagca gcttcgggaa gtgtaccccc tacgtacaac caacttgaaa      1500
     catttgtact aggcagatgc cagatgttag atgccattcc tgtgaagcgt aaagctccac      1560
     aagaaatagg tacactgaag agaccgaaat tggaaaccag atcttttaca gcgacaactt      1620
     tgacacgacg gcaagggtgt gcagcatgcg acaaagacca ttttatcgga cactgccaca      1680
     gattcgggga aaaatcgacc gaagacaaag ttaaaatcat caaacggttt tcactttgtt      1740
     tcaattgttt gaaaccaaaa cacacagcgg atcagtgtca tagcagaggt tgcatcaagt      1800
     gtgggcgtaa gcatcacaca tcgatacacc gtgaaccaca atcagaaact tctcagggac      1860
     gaacgcgtta tgagaaacgt gagtaattga gactgcagac aatttcgtaa catataactt      1920
     tacatctctt tttttattaa taaatttgtc agatttgaaa catgatcttc atcatttatc      1980
     gacacaatcc atccttccaa cggcttccgt attggtcttc tgcgataatg gttcacctat      2040
     tatgtgtcgg gtattattgg attcaggttc tcaatccaat tttgcgacta cgtcattgat      2100
     tcgtcgatta ggagcaaaaa ctgcatatac gaaaatatcc ataatggggt ttggacaaaa      2160
     tgttcgctct gtcagcgaaa aggcagtcat cacgttcaaa tctcgtacgt ctacttatca      2220
     aagtactgta catgtgcttg taacagatca aattactggc atgttgcctc cgtctgattt      2280
     agatgttagt agttggcaat tcaacgaagt gactctggca gatcccgaat tttgtttaag      2340
     tagacctatc gacatgttac tagggatcag tgtaatgttc gacattcttc gtaacggaaa      2400
     cattaaggtc gctgagaata tgccttcagc tcaaaacacc tctctgggat ggttaattgg      2460
     aggaagtgtc aaacggatga gctccagcga taaattgaac agtttcttta atgaccgaac      2520
     caatagtcta gtggctcgtg aatggacaga ggaagaagaa ctctgtgaac agatatttgc      2580
     caaaacaact acgcgcggtg agaatgggaa gtttgtagta cgattaccac taaaaccaaa      2640
     cgctcaagaa cttggtgagt cgaaaagtat ggcactggat agacttttga agctggagat      2700
     gcggtttgca agaaatccat cactacaaca tgattacact gcgtttatgc aagcctatct      2760
     tgacctgggg catatggaaa aagtgagcga agccagcttg caacgcggtc aacccgtgtt      2820
     ctatttccct catcaccctg tattaaaacc tgacagcagc acaacgaaat taagaacggt      2880
     gttcaatggc tctgcaacaa catcaagcgg cgtttcacta aacgacaact taatggcggg      2940
     accctgcatt caaaacgaat tactgcacat tctgctcaga tttcgatgtc ctacattcgt      3000
     gctaactgcg gacatcaaaa aaatgttcag gcagattgag attcacgagg atgatcgtca      3060
     actacaactc atattatggc gattttcacc agaggatgag gtgagcacct attgcctcaa      3120
     gacagttact tatggtactc gttcagcacc attcgcagca gcgagatgtc tgaaacaact      3180
     tgcgctggac tatgctcatg tatatccaga agctgccgag gtatctacaa ttaatgacat      3240
     gcacactgat ttctgcaata aacattcaat tattttcgac aggtaatcga aacagacttt      3300
     tatatggatg atgcactgac aggacatgat gatcaagaac ggctattgga gatcaaacaa      3360
     cagcttatca ccattttaag cagcgcaggc tttgagctgc acaaatggac atctaacata      3420
     gccgacgacc agaatgagga tcaagagcca gataacacaa agatacttgg gttacgatgg      3480
     aatccgcgta cagatatgtt ttcctttagt aatgaaatca tcagcgggat agcagtcaca      3540
     aaacgcaatg tgttatccga agtacagaag gtgttcgatc ctcttggtac tcttagccca      3600
     ataatcatcc acgggaaaat cttaatgcaa gatatatggt ccgaaaaact agattgggat      3660
     gaaccgctac cacccctgtt agcagatcaa tggaacaggt tccttgtcca aatgaacgag      3720
     ctctccaaaa ttagctttca acgccacgtt aagacaaaag gtcacatcac tgagttgcat      3780
     ggattctccg atgcagctaa acgtgcttat ggagcggtcg tttacgtaag aacagttgac      3840
     gagcacggag tacaagttca cttattctgc gccaaatctc ggatttcccc atcaagtgag      3900
     cagagtaaca aggaagacac gaccattcct cggatggaat taagagcagc cacattactg      3960
     gtggagttaa tggaaactgt gaaagcggca ctaaaggttc cgatgcattc cattcattat      4020
     tggaccgatt caatggtaac actagattgg attaacaaac cagagcaccg atggccaacc      4080
     tttatttcaa accgagttaa aatgatcaat caaaaaacgt ctgctcattg ttggcatcat      4140
     gtaagatcga aggacaaccc agcagattta atctcccgag gagtgaacac caaaaaactg      4200
     tccaacagcg atatttggtg gtctggtcca tcctttctgc aggagcattc gcaaccgtgg      4260
     attcaggaac cgattcggat acttacaacg gaaataaacg agcaaaaaga tcaggagcaa      4320
     cttgaagatc acaagggagt actggaaaaa tgtgatacta tgctgcttga tagattttcc      4380
     tgctttggca aactacagag agtagtagcc tatatcctgc gatttattaa aaactgtcgg      4440
     aacaaacaac agacagctgc gaaaccaaag tggctctcgg tacacgagct tgaagcagca      4500
     cacacgcaaa taattagaat ggttcaacaa agatattttg cacaagagat caaagatcta      4560
     agaaaaaacg gttgtgtatc taacaacagt tctttgataa cgctaaatcc ttttatcgac      4620
     gacaacgagt taatgagagt cggcggacgt atacaagcag ctggagtatc ctacgatcaa      4680
     caacacccca taattttacc tccgaagagc aacgtaaccc agttaatcgc agttgaacac      4740
     catcgtaaaa atctacatgt cggacctcaa gggctgcttt atgctatgag actaaaatat      4800
     tggccaattc atggcaagca attggcacgc caagtggtgc atcgatgtat tatctgcttt      4860
     aagaccaaac caaaaacatt gcgccaaatc atgggacaga taccgcgcgc acgattgaat      4920
     cctgctagac cctttcaaat ctgtggagtt gattttggtg gtccctttat aatcaaggag      4980
     aactttgtga gaacacagaa gacgcttaag gtctacgttg cattgttcat ttgcttaagc      5040
     acccgtgcag ttcacatcga actggtaagt ggattgtcaa gtgagtgttt cattgcagct      5100
     ctaagaagat tcagcagtca gcgtggtcgg agcagcataa ttcactgcga caatggaaca      5160
     aattttgttg gaacaaaaaa cgaattggat aatatgacgg ctaaatttga gcaagaagta      5220
     gcgcccaaca tcaggagttt ctgtgcaacc gaaggtattg aatggaaatt cataccccct      5280
     cgggcaccta actttggagg tatctgggaa gccgggatca aaagtgtcaa gcaccatatc      5340
     aagcgggtcc ttggcactaa catacctact tacgaagaaa tgctgacact gttgaagcaa      5400
     attgagggtt gcttgaattc gcgaccgata tcgcctatgt ctgcggatcc aagtgatatc      5460
     agcccactca caccaggcca cttcctgacc gggggaccga tcatcgctct gcctgataag      5520
     gatgttaccg aagtaccaac taacaggcta aaacgatttg aagagatcca aaaacgtcta      5580
     cagctgtttt ggaaacgatg gagatctgag tacttgaaca atgtccagca gcgaaccaag      5640
     tccttgtgta gtagtcaacc caatctgcta ataggtcaac tatgcctgat aaaggatgat      5700
     aacctacctc cactttcttg gattacggga cgagttgttc aagtacatcc aggtcctgat      5760
     ggtatcgtta gagttgctac actccgcacc atcaacggcg agcttaaacg gtgtatctct      5820
     aagctgtgtc tattacccct tgaagaatgt ggcgggggga gta                        5863
//
ID   BEL-873_AA-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-873_AA-I;
KW   BEL-873_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-204
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-204
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2970-2970 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 204 BP; 54 A; 60 C; 31 G; 59 T; 0 other;
     tgtaagatgt tgtaacgccc ttttcgtaat gtaccgcttc taacacaacc ctgaaataaa        60
     tttgtcagat ctagtactcc ttccactgct ttgtctacaa atctctccac aactccgagt       120
     gaggtgtcac ctctgcgact taccctgaac tcgtccactt tcgctacaac cagccaaccg       180
     ttaacagctc ttgagtgata aaca                                              204
//
ID   BEL-874_AA-I repbase;    DNA;    INV; 7568 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-874_;
KW   BEL-874_AA-I; BEL-874_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7568
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7568
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1054..2658
FT                 /product="BEL-874_AA-I_1p"
FT                 /translation="MVRAEEYKELKKQEKQLIDIINGIARFVQEFKKGKHE
FT                 PQIDVRLETLEEAIKKFYSVRRKIDLIHDEEDSSETLKPGERARAEKERAK
FT                 KSEDSLNNMQEQYYAVKAALIQLRPKPEIPKAQEDNNLNEVQPMSRVKLPD
FT                 IKLPSFSGRIQDWTSFRDTFRSLIHNNQQLADVDKFTYLRSSTAGEALQEL
FT                 NSVELTGDNYEVAWKLLEKKYENRKLIVRAHLDSLFAVEPMRKESCEALSH
FT                 IISEFDKNLLMLKKIGEQTDNWSTILAYMVCSRLDSTTLRHWETHHNSKEV
FT                 PKYEDLMQFLRDQCAVLQSIAPAKAYDVDKRQRSSTIHTSSQSQRRCLFCG
FT                 DSYHLPFKCSKLQNMTVAQRADEINRKRLCRNCLSTGHFAEGCSRGSCTRC
FT                 GRNHHTMLHFERSSSSGYQAKSSVPVSAPPSVPNAQNRPNSSTTPAANQQQ
FT                 SQQSRSKQQSQTQTPSTQPVTQAQPTSSYPVIRSQNTHPQPTTDPQPAISL
FT                 ETTESSRCIGTTTRQVLMSTAIVKVVRPFWQHCSCQNAS"
FT   CDS           2684..6514
FT                 /product="BEL-874_AA-I_2p"
FT                 /translation="MTSGFSKRLKFHEQRSFLKVQGIGNSSVTSSKSVEAN
FT                 IEPRHSSISSFGERMQFHVLPKITQTLPLRPLRMDLLEIPSDVVLADPTFG
FT                 EPGPIDMIIGAEFYFDLLRAGRRKLFETGPTLQETVFGWVVSGKVPEVSSN
FT                 VPTTSSYVTSTVDLQELIARFWELETCHVNRTHSVEETACEEFFNRTTIRD
FT                 EDGRFVVTIPKKEHMLERLGQSKDIAMKRFIGLEKRFALNNDLKEAYKEFI
FT                 HEYILMGHMKEVDEKQDTGFPVYYMPHHAVLRPDSTTTKLRVVFDASCRTS
FT                 SGISLNDTQMVGPVIQNDLITTILRFRHHRIAVIADVAKMYRMVRVPEQDQ
FT                 HLQRILWRDTPEEPVKTFELLTVTYGTASAPYLATRCLKKLGEDSVSTHPI
FT                 AAQVVQEDFYVDDMLSGADTVSEAQKLMDEVIELTNSVGFTLRKWNSNAPR
FT                 LLAKLPTHLRDERSVLDLDSSSATVKTLGLRWDTQSDYFCFTFPEWRSNSS
FT                 AITKRSVHSDAACFFDPLGLVGPVVVQAKIFIQRLWLLKCDWDEPLEESLQ
FT                 ILWQEYKQNMIALESIAVPRWLGFSNDCTEVQLHGFCDASEAAYGACLYLR
FT                 CTASDGTVTVRIITSKSRVAPLENLQKKKKKQNIPRLELSSALLLSHLYEK
FT                 YNQVQPNIKAYFWTDSMIVKHWLASLPSRWQIFVANRVSEIQHLTKDGIWN
FT                 HVPGTDNPADLISRGLSPAHLQYQSIWFEGPQWLSQDPQHWPHAYDAANVE
FT                 LDPALLEERPSPAFAAQAIPPSEIFGERSSFTELVRIVALLLRFRHNAQKC
FT                 NRQFRNTGCLSLQEQEEAIVVLVRLSQQECYPQELRDLAKNGCVKDSSNIA
FT                 ALHPRLFDGVMRVGGRLSKAPISSNRKHPYILHNKHPFAAMIVRHYHHKLF
FT                 HAGQQLLISAVRGKFWPVHLHSLARRVIHSCIPCFRNKPKVLDQIMADLPS
FT                 ARVTPAPAFLKVGVDYCGPFFVNYPNRRASPVKCYVAIFVCLVVKAIHLEL
FT                 VMDLTSQAFLAALKRFTARRGRPQLIMCDNATTFVGAKRELTELHRLFHDQ
FT                 RFQAQLIKDTSSDGIEFRFIPPRTPNFGGLWEAQVKSFKGHFKKAIGTKVL
FT                 KVDEMLTALYQIEAVLNSRPLTPLSNDPKDFEALTPGHFLVQRPLTAIPEP
FT                 DLQDVPSNRLSKWENVQQLSQQVWKKWSTQYLSDLHNRTKWIKQRNNISVG
FT                 TMVLLKEENAPPLKWHLGRVIKVFEGSDDNIRVVTVRTKDGCFDRGISKVC
FT                 PLPIRDNEELNNLQNA"
XX
SQ   Sequence 7568 BP; 2035 A; 1909 C; 1894 G; 1730 T; 0 other;
     tggtccttcg agccggatcg taaccggtgg gactaaaagt gaccgtttgg acaagtgatc        60
     gtgtgaaggt ggcgatttga ttcgcaatta gccaacccca cggtggcgaa aatcaaacct       120
     cgagtggaag tgctctgcga ttctttcgca ataaatccaa gcccactacg gtggtgaaga       180
     tcgaatcgaa aaaagtgaaa tcgattgtgt gccgtagcca cgctgctgtt ggcggcagag       240
     aagaacaatc cccacggcag ggatagaagg cgaaagaaac tgattgtgtg cggtgtgtga       300
     tatcgtcggg attgtgtcgc cgttgttcta cagcaaccac gctgctggtg cctacacgga       360
     ggaaacggca caggaaaatt tgacggtttt ttcgagcagt tttaagatcg gccggcggcg       420
     agaatttgca cgtgtcgtcg gaggtcagtg tagcagtttg cttgcgggta gcggtagcag       480
     taaacggaat catcccgatt gccgtcatcg ttcagggaag tagaaatttg catggttttg       540
     tgttgcatgg tctttgtggt tgggttgcat gtgatgggtt cgagttaggc gatgagtgat       600
     aagcagcaat aaattttaaa acgataattg agcgttttct tccgggtatt gtggcctggg       660
     ctgagttgaa ttcccttgga tagatggttc ttggctcgtc tcgttggttc gatacttttg       720
     gctgtctttt tccgctgaaa tcttcaatgc tgtcaattag ctggtcaatc ggtcggtcgc       780
     gtggaacgta gaagtgagta aatccagttg cagtgttttc ggtcgtgcgg tcgaactgat       840
     tccagtgaat gaaaagtggt gtgaagtgaa ttataaactt gattggcaat ttacagtact       900
     gctgctgctg tgtttctagt gactgttaag tgacacgaac ttgagtgtgg actctttctg       960
     tgaacagtga cagttcttgc taacaatcta aaagtgactt tatcatccag cagtactgta      1020
     atcttgcggg tgattttttg gaaaattgtg aagatggtga gagctgaaga atacaaggag      1080
     ttgaagaagc aggagaagca gctgatcgac atcatcaatg gaattgcacg gttcgttcag      1140
     gaattcaaga aggggaagca tgaaccacag atcgatgttc gcctggagac cttagaagaa      1200
     gccatcaaaa agttctacag cgttcggcgt aaaatcgacc tgatccatga tgaggaggat      1260
     agtagcgaga ctctgaaacc tggagaaaga gcccgtgcgg aaaaggaacg agcgaagaaa      1320
     agcgaagatt cgctcaacaa tatgcaggag caatactatg cggttaaggc cgctctcatc      1380
     cagctgcgcc ctaagccgga aatcccaaaa gctcaggaag acaataactt gaacgaggtg      1440
     cagcccatgt ctcgtgtcaa acttcctgac attaagcttc caagcttcag tgggaggatc      1500
     caagattgga ccagctttcg cgatactttt cgaagtctta tccacaacaa tcagcagcta      1560
     gcagatgtcg acaaattcac ctacttgcgg tcgtcaacag ccggagaagc cttacaagag      1620
     ctgaactcgg ttgagctgac aggtgacaac tacgaagttg cctggaaatt gttggagaag      1680
     aagtatgaga atagaaaact catcgtcagg gcccatctag attccctttt tgccgttgag      1740
     ccgatgcgga aggaaagttg cgaagcctta agccacatca tcagcgagtt cgacaaaaac      1800
     ctgttgatgc tgaagaaaat cggggagcag acggacaact ggtcgacgat actggcgtac      1860
     atggtttgtt cccgccttga ttcaacgaca cttcgtcact gggaaacgca ccataatagc      1920
     aaggaggtcc ccaagtacga agatctgatg cagttcttga gggatcaatg tgcagtgttg      1980
     caatctattg cacctgcgaa ggcctacgac gtcgacaagc gacagcggtc ttcaacgatt      2040
     cacacgtcgt ctcagtctca acgacggtgc ttattctgcg gagattctta tcatttgccg      2100
     ttcaagtgca gcaaacttca gaacatgact gttgcgcaac gtgcagatga aatcaacagg      2160
     aagcgactct gcaggaactg cttatctacg ggacatttcg ctgaaggatg ttccagagga      2220
     tcgtgcaccc gctgtggacg aaaccatcac accatgctcc atttcgaaag gtcgtcaagc      2280
     agcggctatc aagcgaagtc atccgttcct gttagtgctc ctccttccgt tccaaacgcg      2340
     caaaatcgac caaactccag cactactcca gcagctaatc agcaacagtc acagcaaagt      2400
     cgttccaaac aacaaagcca aacacaaaca ccatccactc aaccagtcac acaagcacaa      2460
     ccaacatcgt cataccccgt gattcgctca caaaacactc acccacaacc caccactgac      2520
     ccacaacctg caatttccct tgaaaccact gaatcttcac gttgcattgg cacgacaact      2580
     cgtcaagtat tgatgtcaac tgcaattgtc aaggtggtta gaccgttttg gcaacattgc      2640
     tcttgccaga acgcttcttg attcctgttc ggagttctgc tacatgacca gcggattttc      2700
     aaaaaggctg aagttccacg agcagcggag tttcctgaag gtgcaaggaa tcggtaacag      2760
     tagtgtaacg tcgtcgaaat ctgtagaagc caacatcgaa ccaagacact cgtcgatctc      2820
     ctcgttcggt gagcgcatgc agttccacgt tttgccgaag atcactcaaa ctctgccact      2880
     ccgacctctg cgtatggact tgttggagat tccgtccgat gtggtgctag cagatcccac      2940
     attcggtgag cctggcccca tagatatgat aattggcgcg gagttctatt tcgatctact      3000
     gagggccgga agaagaaagt tattcgagac tggtccaacg ctgcaggaaa cagttttcgg      3060
     ctgggttgtg tccggcaagg taccggaagt gtcaagcaac gtaccaacca cctcaagcta      3120
     cgtgacttca actgttgacc tgcaagaact aatcgctaga ttctgggagt tggagacttg      3180
     ccatgtgaac cgaacacatt cggtagaaga gacagcttgc gaagagttct tcaacagaac      3240
     aacaattcgc gatgaagatg gcagattcgt agtcacgatt cccaagaagg agcacatgct      3300
     ggagcgacta gggcagtcca aggacatagc catgaagcgg ttcattggat tggagaagcg      3360
     gttcgccttg aacaatgacc tgaaagaggc ctacaaggag ttcatccacg aatacatcct      3420
     gatgggccac atgaaggaag tcgacgaaaa gcaagacact ggatttccag tgtactatat      3480
     gccgcatcac gccgtgctgc ggcccgatag cacaactacc aagctgaggg tcgtgttcga      3540
     cgcgtcgtgc cgaacttcaa gcggaatctc actcaatgat actcaaatgg taggaccggt      3600
     catccagaat gatctgatca ctacgattct acgattccgt catcaccgta ttgctgtcat      3660
     cgccgacgta gcaaaaatgt accggatggt ccgagttcca gagcaagatc aacatctaca      3720
     gcgcatcctt tggagagaca cgccagagga acctgtgaag acgttcgagc tgctgacggt      3780
     cacgtacggc actgcgagtg caccatatct ggccacaaga tgcctgaaga agttgggaga      3840
     agatagtgta tcgacgcatc cgattgctgc acaagtggtt caagaggact tctacgtcga      3900
     cgacatgctg tcaggtgcag acactgttag cgaagcacaa aagctgatgg atgaagtcat      3960
     tgagttgaca aattccgtcg gattcacctt gagaaagtgg aactcaaacg cgccaaggtt      4020
     gctcgccaag ctgcccacac atctacgtga cgaacgttct gttctcgacc tagactcctc      4080
     aagtgcgacg gtcaagactc tagggctgcg atgggacaca cagtcggact atttttgctt      4140
     caccttcccc gagtggagat cgaattcttc tgcaatcacc aagcgtagtg tccactccga      4200
     cgcagcgtgt ttcttcgatc cactcggctt ggtcggtcca gtggtagttc aggcaaagat      4260
     cttcatccag cggctctggc tgctgaagtg cgattgggac gaacctcttg aagaatccct      4320
     acaaatattg tggcaggagt acaagcagaa catgatcgct ctggagtcga tagcagttcc      4380
     tcgctggctc ggattcagca acgactgtac tgaagtgcag ttacacggct tctgcgacgc      4440
     ttcggaggct gcatatggag cgtgcctcta tctacgttgt actgcttcgg acggcaccgt      4500
     caccgtaaga ataatcacct ccaagtctcg agtggcacct ctggaaaacc tccagaagaa      4560
     aaagaaaaag cagaacatcc cacgcctcga actgtcctcg gcactcttgc tgagtcatct      4620
     atatgagaag tacaatcaag ttcaacccaa catcaaggcg tacttttgga cagactcgat      4680
     gatcgtcaag cactggttgg catcgttacc ctctcgctgg cagatattcg tggctaatcg      4740
     agtgtctgaa atccagcatc tcaccaagga cggaatttgg aaccatgttc cgggcaccga      4800
     taacccagca gacctcatct cgcggggatt gtctccggct caccttcaat atcaatccat      4860
     ttggtttgaa ggtccccagt ggttgtctca agatccacag cattggccac acgcatacga      4920
     tgctgccaac gttgaattag atccagcatt attggaagaa cgaccgtcac ctgcttttgc      4980
     agctcaagca atcccaccga gtgaaatctt tggagaacga tcatcgttta cggaactagt      5040
     ccgaatcgta gcccttttgc ttcggttcag gcacaacgcg cagaaatgca atcggcagtt      5100
     caggaacact ggatgcttgt cgttacaaga gcaagaagag gcaatagttg tcttggttcg      5160
     cttgtcgcag caggaatgct atccccaaga acttcgagat ctggcgaaaa atggttgtgt      5220
     aaaagattcg tctaatatcg ctgctctaca tccacggtta tttgacggcg tgatgcgcgt      5280
     cggcggccgg ctctctaagg caccgatatc gtccaatcgc aaacatccct acattctgca      5340
     caacaaacat ccgtttgccg caatgatcgt acgacattac caccacaagc tctttcacgc      5400
     tggtcagcag ctactaatct cggctgtccg aggcaaattc tggccagttc accttcacag      5460
     tttggcaaga agggtgatcc acagctgtat tccatgtttc cgcaacaagc ccaaggtctt      5520
     ggaccaaata atggccgatc tcccgtcggc gagagtaacc ccagcgccgg cattcctgaa      5580
     ggtcggagta gattactgtg gtccattctt cgtgaactat cccaaccgtc gagcaagtcc      5640
     cgtgaagtgc tatgtggcga tatttgtgtg cctggtcgtc aaagcgatcc atctggagct      5700
     ggtaatggac cttacttctc aggcgttctt ggcagcgctg aaacgattca cggctcgtcg      5760
     tggtaggccg cagctgataa tgtgcgacaa cgcaactacg ttcgttggtg caaaacgaga      5820
     actaaccgag ctgcaccgcc tcttccacga tcaacgattc caagcacagc ttatcaagga      5880
     caccagttcc gacggtatcg agttccgatt catccctcca cgcacaccca acttcggagg      5940
     cctctgggag gcgcaggtga agtcgttcaa gggacacttc aagaaagcta tcggcaccaa      6000
     ggtgttgaag gtcgatgaaa tgttgactgc gctgtaccag atcgaagcag tactcaactc      6060
     gcgcccgctg accccactaa gcaacgatcc gaaggatttc gaagccctaa ctccggggca      6120
     ctttctggtt caacgaccgc taaccgccat cccggagcca gatttgcaag atgtgcccag      6180
     taaccgctta tctaagtggg aaaacgttca acaactgtcg cagcaagttt ggaaaaagtg      6240
     gtctacccaa tacctctcgg atctacacaa ccgcacaaag tggatcaagc agcggaacaa      6300
     catctccgtc ggtacgatgg ttctactcaa ggaggagaat gccccacctc tgaagtggca      6360
     cttgggtaga gtcatcaagg tgttcgaagg ttcggacgac aacattcgtg tggtaacggt      6420
     ccgcacgaaa gacggatgct ttgatcgagg aatctcaaag gtctgtcctc ttcccattcg      6480
     ggacaacgaa gagctcaaca atctccaaaa cgcttaagtc actcacagag tgcaacctgg      6540
     tgcaaccgca ccactctagt tttcgattac atcagtcaag tcgtctgagg gcaatccagt      6600
     cggaagaagg ttaatttggt atggtctgtg catgtattgt aagcgtcatt cagtctggtg      6660
     aaggtctcgg cgcacaaggc gtcggcgttg gccacagggt catcgcaagg ttaaggcatc      6720
     atactaatcc ctatgcatat cgtcggtagc accacagcgc tcgctatcat ctctaatcag      6780
     gaggaatcca tggtacccct ccacaccgcc gttgtcaact ggttggcatt gggcttggcc      6840
     agcccatcct gtcgatcagc gcaccgatgg cacgaagttc aggaagtggt cgccggacca      6900
     cgaaagcatc tacccaagac gaacactgcc acccaggcgt tgaaactcta cggaggatcc      6960
     tcaggcaccg ttcttgcctg ggtaggtaag ttgttccagt ttttcagaaa cctatgccag      7020
     tcactacatc cattcctttt cgaggaaatc atcaccaact tcaccatcac caatcgcacc      7080
     aagtctcaca cgtacgaggg aaggaaggaa gctagtcatc aaccgatgca ctgagcgcag      7140
     acgatcgtac cgatgaaacc tcataccagc tgaagcaacc caagaagccc actgacgtca      7200
     tcagaacttc gtagcaagac ccaacaccga agaagaagaa gaagaagaag aatccccgct      7260
     gtgcactcgg cacggcagcc ccgatgaagc aacatcactc tccatcacga aggcagcgca      7320
     cgtgctaggc gtaacgtgtg ccggcgcaga aagcgcctcg aagcagtagt ccccaactac      7380
     gcgtccccaa gcgtgctggc gttcccgtcg acaggggtca gcgcagttca gcagtagcag      7440
     aaacagtgat ataaacgatg aacttaaaaa caaaatacaa tattgttaga tgtaagcaag      7500
     tgcgatacaa ttagaagacc acaaggtagt tctttcttga aactcatctg gtttcaaggc      7560
     ggccggca                                                               7568
//
ID   BEL-874_AA-LTR repbase;    DNA;    INV; 387 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 25.10, Created)
DT   18-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-874_AA-I;
KW   BEL-874_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-387
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-387
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3004-3004 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 387 BP; 103 A; 98 C; 81 G; 105 T; 0 other;
     tgttcggccc atttagtttg cgaacccctg gttctgatct ctttagatcg cattcaattc        60
     tcctaagata agagatagga gctataagag ctatctccca tctctcgctt cccgagagat       120
     cgccgcatcc agatatcggc gtttgtttat aataaccaat ttgcacccga ataaatttag       180
     ttagccacca atatccacca agagaacacg tctctatatt cggttcgcgg tcggaaataa       240
     agtttacctt tgccaacgta aactcgcccc agtgattcgt gtgtgagaaa ggtcaacgat       300
     cgaaggtgga ggtcagggac ctctgaagac ccgcgtctgg acggacttaa ttctatacag       360
     tccacttaaa ttgtccgtgc cgcaaca                                           387
//
ID   BEL-875_AA-I repbase;    DNA;    INV; 6133 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-875_;
KW   BEL-875_AA-I; BEL-875_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6133
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6133
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2981-2981 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6133 BP; 1727 A; 1511 C; 1519 G; 1372 T; 4 other;
     taatataatt ttcgtttatt acgaaaaatt cggttcgcga gcatgtcgag tcgtggtaca        60
     aagtccgacg gcagaagtag caaagtgagt ggcaagagtg tgcaaaaggc caaggaaggt       120
     gaagtggtta gtgaagtggt tggtgaggag gatatggatc cggtggtagt ggtggtggat       180
     gggaacgaaa ggaccatcga tggatacacc tgtaagacct gtagaagagc cgattcggat       240
     gatatggtgc agtgtgacca gtgcgatgga tggcatcact ttgcgtgcgt tggagtcaca       300
     gatgaagttg tcgatcaaag ctggtgttgt gccaactgca agactgctac atggaaccag       360
     cgaacgtcaa catcagacaa aaattcagcg ttgaaggatg ccaacacaga acactcgtct       420
     aaacgtgctt catcgcaaaa ggcaggctct accaaagggc agaagatatc atcgagcggt       480
     agccgtcacg tgccaccgaa cacatcagat ccagtagtac gttcgtcgca agagccgcat       540
     aggactggaa aaaagctgtt tgttccatca ttagagggac tgcctgccat ccgattggac       600
     gaagcatcat cggaggtctc gtgttcgtca tcccagaggt cagcacgtaa ccgtgccaaa       660
     ttgcagctac agcggctaga agaggaaaag gccttcgaag agcaacaagc agagcgtcgc       720
     cggcttgctg aacagctaga agcggagaaa cataaagcgt tcctggataa aaagtatcag       780
     ttactggaac agctagccag tgaaagagga tcgagtcgga gttcaagcgt ctattctcgg       840
     aaccgtgtgg agaactggat cgagaagggg tatcattccg aggcaatgca acagccaaac       900
     gaactgccag cacagcaaga gcggagccaa gcaaatcagc taccagcaca gcaggagttc       960
     gacgcacgtc agccagaagc catccgaatg tcgaagtatt ttaatcccaa tgttcagcca      1020
     caatctacga gaattcagcc ggcgttgaac cgggtttccc gatctctagc aaattcgacg      1080
     gttctagaac agaacaacaa tggggccttc agtcgaaacc aggcgatgca actagacgaa      1140
     tacgatccgt tccagctgtc ccgctcccaa atcgcagcaa ggcaagcggt ttcaaaggat      1200
     ttaccaacat tttctggcaa cccggaagat tggccgattt ttctatccat gttcaacagc      1260
     acgacagcta tgtgtggatt cacggaggaa gaaaatctcg tgcgactgca acgaagcttg      1320
     aaaggaaaag cttatgaagc tgtaaaatgc agactgatgc atccgggtaa tgtccagggc      1380
     ataatgagta ctctaaaaat gttgtttggt caaccggaga tcattgtgca ttcgttgatt      1440
     gggaagatta gctctctgcc accgatacgt gaagatcgtc tggagacgtt ggtagacttt      1500
     gccgttagtg tacagaattt ctgcgcaact gttgattcat gcggattaga agaatacatg      1560
     tataatgtaa gtcttttaca ccagcttgtt gggaagcttc caccatcaat aaagcttacg      1620
     tgggcacaac accgaaaaat tcagccggct gtcaaccttg cgacttttag tgagtggata      1680
     tactcgctgg ccgaagcagc aagttcggta acgttcccga cagaatcgtt tgcaacgaag      1740
     ccgatgcgaa acgaatttcg ccggaaagag aaaggagaag cgtatctcaa cacccactct      1800
     gaaacacaaa ttcgctacga cacgaattct aaattgcgag cagaagcatc tgcagcagcg      1860
     ccgacaagag aaatttgtcc ggtatgcaaa ggatcctgca aatccgtgga caagtgcaag      1920
     cgtttcctgg agctttcgag ggattctaaa tgggctgtta tccgagagtt cggactgtgc      1980
     cgaacctgtc ttcatcaaca cagaggattg tgtaaggcga aatcgtgcgg caaagatggg      2040
     tgttctttca ggcaccacca gctgctgcac aatgaacaga agtccaaaca gcaacctacc      2100
     aagcagacgg ctgataattc aattcctcca cagacgacca gcggcgctga tttggactgt      2160
     aatacacacc aaacagtttc cagcgcagtc ctattccgct accttccagt agtcctatca      2220
     ggaccggaaa agacaattca taccttcgcg ttcctcgatg aaggatcggg agcaacacta      2280
     ttggaccaat gtttggccga cgagcttgaa ctaggtggaa ctccaagtcc aatatgccta      2340
     cgctggacag gcggcacaga gcgatgcgag aaggattcgt gcatcgttcg cctccaagtc      2400
     gccggacagc ataaaggtgc agagaagttt actctagatg aggttcatac cgtttccgag      2460
     ctacggctac cacgacagac tctagatttc gatgaaatga aacaatcgta ccgctattta      2520
     gaaggattgc caatttcctc gtaccgtgat gcacgtcccc gcatcctgat tggaacaaag      2580
     catgcgcagc tgggtttaac cctaaagagt cgagaaggag aattcggaga accaattgcc      2640
     acaaagacgc gtctaggctg gaccatttgc ggtaacctgg gatccggaga tgcaccgagc      2700
     atgttccact acagcttcca cgtttgttcg gtgaacgagc gatccgataa tgatctgcat      2760
     caagcaatga aagattactt ctcaatcgac agcctgggaa tcaacagttc atccaagcca      2820
     cttctgtcaa ccgacgataa gcgagctgag accctgttaa aatccttaac acgcttcgca      2880
     ggaaaccggt acgaaaccgg cctactctgg cgctacgaca acgtccgtct acctaacagc      2940
     cggacaatgg cgctgcatcg acaccaatgc ctggaaaaac gcatggcgaa tgatccccat      3000
     ctcgcagcaa ccttgcaaca gaagatagcc gactacatcg ctaagggtta tatccgcaga      3060
     gtttctcatg acgaagttca acagcagtct gcaaatgcct ggtttttgcc cgtatttccg      3120
     gtgaccaacc cgaacaaacc cggaaagatt cgaatagtgt gggacgcagc tgctaaagtt      3180
     cacggggtct cgctgaattc ggtcctcctg aaaggcccgg atctgctgtg ttctcttctc      3240
     ggcattttgc tgcgcttccg attgcaccct gtagcggtga ccggggacat ccgtgagatg      3300
     ttccaccagg tgaacatccg tccagaagat caaaggtacc aatggtttta ctggacggac      3360
     gaaaatggcg aactggtgat ctatgcaatg acggtgatga cctttggagc atgctgttct      3420
     cctagtagcg ctcagtacgt taagaacatc aacgctgacc ggtttatcgg aagccacccg      3480
     gaggcatgcg aggcaatcac aawatcgcat tatgttgacg acatgctgat tagtttcgcc      3540
     acagaggaag aagctatcca aatatcccag gacgttcggc acgttcawgc tcagggcggc      3600
     tttgagatcc gcaactggat aagcaattct aaaaaggtta tggaagcact agaggagaag      3660
     aacgtggaag aggaaaaaag tttgaatctc tcaactgaac tggctaccga gaaggttcta      3720
     ggcatgtggt ggaatacaac agccgatgca ttcacctata agatcggctg gaatcgctgc      3780
     gattcagatt tactcaaaaa cggcagacgt cccacaaagc gagaaatgct acgagtgctg      3840
     wtgaccatat ttgatcsgct cggactcatc gctcatttcc ttgcttattt gaaagtcctg      3900
     cttcaagatg tttggcgatc gggtgtcact tgggacgaag aaattgacga tgatgcgttc      3960
     gagaaatggc agcattggct aagcgtttta ccgcaggtgg aaaaactaca aattccccgt      4020
     tctttatggc ccaaccacct catcaattca gccgatgaaa tacagcttca tacatttgta      4080
     gacgctggaa aggatggaat ggcggccgca tgctttctgc ggtttctgag gaacggagaa      4140
     atccactgtt cactcgtcac ggctaaagcc agagtcgccc ctttgaaact gacgtcgatt      4200
     ccacgcctgg agctacaagc ggcagttatt ggagcacggc tgtcacggac cgtgctagaa      4260
     acgctagcca tcagtatcac ccaaaggttc tactggacgg attctcgaga cgtgttatgc      4320
     tggatcaact ccgaccacag acgatatagt caatttgttg gtttccgtgt taccgaaatc      4380
     ctggaaacta ctgatcgtca agactggcga tacgtaccaa gcaagctcaa cgttgccgac      4440
     gatgctacta agtgggacgg cctacccgat ctgtccaccg ggagtagatg gtttcgtggt      4500
     ccaggttttc tatgggagca tcctgaaagc tggccggtct ttcccgtccg taatgagtcg      4560
     acgaacaccg agctactgac aagattactt gtccattaca cgccaccgga gccggtcatt      4620
     aaagtacaca atttctccaa ctggaatcgt ttacagcgtg tcgtggcacg agtactacgc      4680
     ttcatctcaa actgtcgcct caaattccac cgaaaaccca ctaactgtgg ccctctcacc      4740
     aaaggtgaac tccgctcagc cgaagcctgg ctcatacggg ttgctcagca agacgagtac      4800
     ttggaagagc ttcacacctt aaaaaacgct aaactgcttc ctaaaaatag tgtgttatac      4860
     aaactcctcc cgtggattga cgaccgcggc attatgcgaa tgaagacacg gattgcggcg      4920
     tgccagtaca ccaccgaaga cgcaaaaaat cccatcatcc ttccaaggaa acaccacatt      4980
     accacactaa ttattcacca ctaccacaat cgataccacc accaaaacca cgaaaccgtg      5040
     attaacgagc tgcgtcagaa gtatcaaatc cctcgcttac ggacatcgta taaccaagtg      5100
     cgtcaaaatt gccaaaaatg caagaacgaa cgtgcagcac cgagcatgcc gattatggcc      5160
     gatctaccac ctggacgcct agaagctttt tcgcgtcctt tcacgcacgt aggtattgac      5220
     tacttcggcc ccatcgaggt tgttgtcgga agaaggcgcg agaagcgttg gggaatgttg      5280
     gcgacttgtt tgaccactcg agccgtacac atagaacttg tcaattcact cagcaccgat      5340
     tcgtgtatta tggcgattcg taacttcgtt gctcgtcgtg gtcaacctcg caagatctac      5400
     agcgacagag gaaccaattt cattggtgca gatcgagagc tacgcagact gcagactact      5460
     atcaaccaaa atgtaatgat gaaagaattc acgaacgaag agaccgagtg ggtgtttaac      5520
     cctccattgt caccgcacat gggcggaagc tgggaacgtt tgatacgaac tatcaaaaat      5580
     aatctgcttg ccgtctgctc tactaaggct ctgtctgatg aagtcttgcg taacctgctg      5640
     attgagatag agaatgtcgt aaattccaga cctttaacgc acgttccagt ggatgacgat      5700
     tcaggtccag ccctaactcc aaaccatttc cttcttggct cttccgatgg ctcgaaacct      5760
     atatcagaca tcgatgatac tggtcgtgtt ttgaaacaga acctatgtac ctcacaaatc      5820
     ctagcgaaca ggttttggaa gcgttgggta accgactatc tacccgagat tacccgccga      5880
     tcaaagtggt tccaattcgt caagcccatt actaccgggg atgtcgtcgt catagttgat      5940
     cccaggtcac ctcgaaactg ctggccaaaa ggcagggtca tatctacgag aaacagccgc      6000
     gacgggcaga ttcgttcagc aactgtgaga acaacaaccg gcatctacga acgtcctgtg      6060
     gcaaaattgg ctgtcctaga tgttcagcgc gtaggatcgt aaaccaactg gaagttggcg      6120
     tacccggggg gag                                                         6133
//
ID   BEL-875_AA-LTR repbase;    DNA;    INV; 780 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-875_AA-I;
KW   BEL-875_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-780
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-780
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3005-3005 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 780 BP; 280 A; 148 C; 129 G; 223 T; 0 other;
     tgttggccta ccctattagg ccaatgcgcg catctatcat ttggacgtct acatctatcg        60
     cagcctgaag aatctacgac aatgcagatg acagtggagt gacaggtatt cgatctgtca       120
     ctgggtgagt gaaaaaccga aaataacaga aataccgata aaagaatagc atgcaaatgt       180
     gatcttgaaa tgaaatactt gaaatactat ttgtaatact agtgatttgg taaaaaattg       240
     ttgaaatcta gtgaacttta agatatacta ccggctacta tatacaaaat aattggtaag       300
     gctacttgtc ttaaaactat atgaaatttt ctaaaactta aactacacac taggtaacct       360
     caattgtgaa ctattcccta tctctaaact accttcgagg caccagttac caagaccggt       420
     aagcaagata attattagaa gttacccttg aatgaacata atgtaacaat gtaatgtacc       480
     tattaggatt cccgtatact cgatattgct acaaggacac gatagccatc aaaagggaac       540
     taaacgtgag tatcacgtaa caaccatgaa tgaattccca cacaatgaat cacctgagca       600
     tgttatcagg ggttctcaaa actatcttca cgtatcacgc aattaaatta taaaattata       660
     aattattctt taggaaaatt atattctctc aacgcaaaca acggatcatt tgattgtttc       720
     atttccgtgc cggagaataa taatttcgga aatattcccg acgttggatc atatccaaca       780
//
ID   BEL-876_AA-I repbase;    DNA;    INV; 5856 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-876_;
KW   BEL-876_AA-I; BEL-876_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5856
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5856
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2982-2982 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 5856 BP; 1525 A; 1547 C; 1339 G; 1431 T; 14 other;
     ttggtccttc gagccggata cggaggacat tccaaggccc gaaagtgatt ttggattgtg        60
     gccacgttgg tgtgaacaat aggtgatttg cgcgtcattg tctaccattg tctacgctac       120
     gacccaagcc aatacccttt ggctttgtta gtgacaatag tggagtagtt catattcgat       180
     caaagccatc cctggcattg tttgctggtt gattgaatag aagcactgtt aagtgtccca       240
     agtgcatttc caagtgacgc cacacgggca tatccatgct agtgaacgtt tgtgaaaaaa       300
     caaccccgcc gattgcgcta gtgtgatcgc tgtgtgctgc aataatttac ttggtggttg       360
     ttcagtgcgt gcccgcgatc gttatcggaa aagatagttc cacgtgtcgg tgtactcacg       420
     agccgtcgcg cgtgcaaatc gttgaaatag tcactcggag agtgattccg tcgcgaaatg       480
     gccaccaaga aggacaaaag attgcaagaa aggtttgtgg cgcgtctttc gttagagtcg       540
     tcactcgaaa cggtcgagac tttcatcgag aactttgaag aaacccgtga tttcccacaa       600
     gtgccggtgt ggttagattt gctagaccaa tggtaccgcg attatgtgaa ggtccaaact       660
     gacattgaaa ggctccaaag cgaagacggc ccattgaaga aacttctcca agaacgcaga       720
     gaattcgatt ccagattttg tgcaacgaaa gggtggttga tgaaccggag aattgtcgat       780
     ctaaactctt cgatcaatcc accagccaat gcaccacmac cgacaaactt tcatttgcgg       840
     ttgccgaaaa tagatctgcc caaattcgat ggagattatt cccgttggct cggatttcgc       900
     gacactttca aatccatggt gcatgatgtt ggtgatatcc cgttggtggc caagttgcag       960
     tttttgctcc aatctctgga aggagaagct cgcaagcctt acgaaacagt ggacatagaa      1020
     gcggacaatt acctcaccac ctggacggcc cttctaaaac gatatgataa caagcgtttt      1080
     ttgaagaagc agctttaccg tgcgctgcac gacctccctt caatacggaa agaatctgca      1140
     caggatctcc acaatctcgt tgatgatttt caacgccatg tcaaagcttt ggcaaagcta      1200
     ggagaaaatg tagagacgtg ggatactccg ctggtttgca tgctttccta taaaattgat      1260
     ccagctactc ttcgagcgtg ggaagagcat gccgccaatt cagacgacat tggatacgaa      1320
     gcgtgcattg agttcctcta tcaacgagtg cgaattttgc agacagtgtc ctccgaaatt      1380
     cagcatcgtt cgcaaggtcc accgatcaag gtggccggtt cgcactcctt ctccaagaaa      1440
     ccttcttcaa caaagacggt tgtcaatacc gctaccacta ccaactcacg atcaaatcca      1500
     cctacgtgta tcgcttgttc cgagaagcat ttattatttc agtgtccgtc ctttcaaggg      1560
     atggccgttg gggatcgtcg tgaactcatc tcccagaagc ggctctgttg gaattgcttc      1620
     aaatccactc atgtcgctag aaaatgcgac tcaaaataca catgtcgcca ttgtcacgag      1680
     cgccaccact cgttgttgca tcaagcatcc aacccaagta agtccacatc caatcctgca      1740
     gtccaacaac ccaaccaggc catgattcag caagaagtat ctaccgagcc cgacactgtg      1800
     tcagtagcag tcagcattcc agcacatcgt aactccccga gcactgtttt cctatccacg      1860
     gttgcgcttt ggataaagga tcggtttggc aaataccact ctgctcgtgc actgatagac      1920
     tctggttcac aatccaattt catttctaag aaactcgcac gtcgtctgtg cctgcagccg      1980
     gaacgggtca gcgtacctat tagcggcatc ggtgaagcaa cagtaacagt gactcaatcc      2040
     gtcgtctcca ccatttcctc gaaaaacaac gaattttcca gtgagttgga atttttggtt      2100
     ctccctaagc caactacaga gcttccctca accaacgttg acgtttcttc gtggaacatc      2160
     ccatcggacg ttgcccttgc cgaccctgct ttcaacgtgt caggtccaat tgacctgtta      2220
     ttgggcatcg agctggtcca cgaataccta aaaagtggca gaatactcct cggcgaaggt      2280
     tcgccggttc tgtttgaaac tgtctttggc tgggcggtca tcggtcgttg gtatggmtct      2340
     actatacctt cctctccgat ttgccacamt gctgttactc aacgaagcct cgaatccatc      2400
     ctagagaagt tctgggaact agaagctgta gagtcaggtc gattgtactc agtagaagaa      2460
     aattcttgtg agaagttttt tgaatccacg accacccgaa attctgacgg acgatacgtt      2520
     gtccgtcttc ctcgtagaga tcctgacact attcgacttg gtgagtccag agccattgct      2580
     gaaaaacgtc tgctgagcct tgagcgtcgg ctcgaatgta atgagtccat caaagcagct      2640
     tatcacgagt tcatcaatga gtatttgcga ctwggccata tgcggaaaat taccgatcca      2700
     ccaaatgata ccatcgacca ttgctatttg ccgcaccatg cggtgttcaa agccgcaagc      2760
     accacgacaa aaacccgcgt cgtattcgat gcatcttgtm gcaccacgtc gggccattcg      2820
     ctgaacgaca cccttatgat cgggccggtg gtgcaagaag acctcttgtc aattatcctg      2880
     cgtttccgta ccaaaccaat tgcgcttgtg gcggacatag aaaaaatgta ccgccaaatt      2940
     gaagttcatc cagaagacca gcccctgcaa cgaattctct ggcggaacca tccgtcggac      3000
     ccaatctcca cctttgagct gcggacggtc acgtacggga ctgcctccgc accttatctt      3060
     gccacgcgga ccctcgtaca gctgtcgaaa gatgaaggcg agacttttcc attggccaaa      3120
     acggtagtgg ccgaagattt ttatgttgat gactgcatca gtggggcgga tgacgtccaa      3180
     accgctctcc aagtacgcca acagaccagt accatgctga aatctgcagg tttcccactg      3240
     cgaaaatggg cgtcaaattc accagaagta ttagcgaaca ttcctgaagc tgagcttgga      3300
     attcaaccgt tttacgactt caccgacagc caatcagtca ccactctcgg actcatctgg      3360
     gaaccaagcc cggatatttt gcgatttaac atccacttac ctctggcagc aggtgtgctc      3420
     acacggcgga ttgtactttc ctacattgcc caaatttatg atccattggg cctagcaggg      3480
     cctgtaattt ccgctaccaa acaatatatg caacgactgt ggtcactgtc ttcgcacaat      3540
     ggaaagtcgt tctcttggga tcaacccctt cccgagaaac ttcagcacga atggaaggaa      3600
     atccacaaca ccctgaatct gctttctgaa attaaagtcc cccgattcgc ttcggtggcc      3660
     ggagcagcca acttgcagtt gcattttttc tctgacgcat ccgagaaagc ttacggtgca      3720
     tgtgtttact tgcgctctga agacttccag caacaagtga gcgtccagct gttgacctcc      3780
     aaatccaagg ttgcccccct gaaaactcgg cacagcattg ctcggttgga gctctgcggg      3840
     gcagttctct ctacccagct gtacaaaaag gtaattgatt cactcaaggc aaaaatcgaa      3900
     atattctttt gggtagattc catgacggtg cttcaatggc tgaagtcacc gccctcttgt      3960
     tggaaaacgt ttgttggcaa tcgagtttcc aaaattcaag aaatgactat tggttgcccc      4020
     tggaatcatg tttctggtaa ggagaatccg gctgacgaca tctctcgtgg cctcacacct      4080
     gctgagttga tttaccgtga tcgctggtgg actgggccaa catggctcaa gatgacgaag      4140
     gacaagtggc caaatcaacc catcgatgct tcaacaacct ccaaggcgct gagcgaggaa      4200
     cgcaaaatgt gtgcagcttc actcaactcg cccagtgaac cattgggtga gctattgttc      4260
     aaccgatttt cgtcgtacac aaaattacgg cggaccgtag cataccttct tcgctataga      4320
     cgagcgctgc atgaatccgc ggccaaatct ttcccaaatg gtgcmtgtgc cgcatcaaaa      4380
     acaacgcctc gtggaktttt tccgtatcta acagcttccg aactgcacga cgcagaaatt      4440
     tctctgtgta gaattgcaca acatcaagca ttcccgattg aaatgaaggc cctcagcaac      4500
     aaacaagtag tcgacaaggc atcgtcgatg aaatggctta ggcctgagat gtacgacgat      4560
     ggtctgatca gagtcggtsg ccgaatccgt cattccaagg ctgccgaatc catgaaacac      4620
     ccgatcgtcc tcaccaaaaa gcatcgtttg gcctacttgt tggccaacca ttatcatmga      4680
     attctcttgc acgccggacc gcagctaatg atgagcacta taaagaacaa attttgggtg      4740
     ctcggtggca gagatcttct ccgccaagtg taccatcagt gccacacctg cttccgccgg      4800
     aagccttctc tgatccaaca atcaacagca gacctgccaa gcccaagagt aagtccatct      4860
     cgaccattct cagtctccgg ggtcgattat tgcggcccat tctatcttcg tgccccacac      4920
     cgaagagcaa gtccctccaa agcatacatt gctgtgtttg tgtgcttctc gacaaaagct      4980
     gttcacctgg aacttgtmgg ggatctctcg acagcagcct tcttagctgc ccttaagcgg      5040
     ttcgttgcac ggcgtggcaa ggtgtccgaa atccattcgg ataatgccac caactacaaa      5100
     ggtgcggcta acgaacttca ccaactctat aagctactga agtccgacac tctcagccgc      5160
     aaactgatct tcgattggtg tgcaaacact gatataacgt ggaaatttat tccgccccgt      5220
     gccccccact ttggtggatt atgggaggcg gcggtgaaat ccaccaaaam ccacctcctg      5280
     aaagaaktgg gcaacaccac ggtctcatac gaagaaatgt tgacgctcat cactcaggtc      5340
     gaaatgtgta tgaattctcg gcctatcacg gaactcacca acgatccttc tgacttggag      5400
     gcactcacgc cgggtcattt cctggttgga acaaacctgc aagcgattcc agaagcagat      5460
     ctcaaacaaa taccagacaa cagactcagt cgttggcagc tgatgcagaa aaggctccaa      5520
     gcaatatgga agcgctggag caccgaatac ttgcagcaac ttcaagcacg ctcgaccaag      5580
     ggaatcagac catccgttga tattcgagtt ggccgactgg tcatcgtgaa ggacgacaat      5640
     atgcctccag cacaatggcc cctggctcgc atcacaaatg tccaccctgg gccggatgga      5700
     atcgcgcggg ttgtcacgct tcggacwtca actaccaaca gtatgacacg tccagttgcc      5760
     aagctggcct tcctgccgat gccagctgaa gatwagaatt aataatatga agaattgatt      5820
     agttaaaacg gcgcagccat tttaaggtgg ccggaa                                5856
//
ID   BEL-876_AA-LTR repbase;    DNA;    INV; 619 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-876_AA-I;
KW   BEL-876_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-619
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-619
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3006-3006 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 619 BP; 207 A; 120 C; 114 G; 178 T; 0 other;
     tgttagttaa ctaaatttat tataatacct aaaattactt ggaataatta attgaattaa        60
     taatgaattc gcctaatgta actaaagcca tgaatttgta ttttacctta cacattatga       120
     aaatgatcta atgcttatat actaccacat ataaactaga accaataacg agaaaacaca       180
     attacgatca ctcaatatca ctcactagat tcacacatgc aaaacctgta atactagaaa       240
     agccgaacac acaagataat tagtttagtt gcgatcagat agtggaagaa tatacatctc       300
     taaacagaca cagagcttct actcagaatc cgaaaaacgt aaagtctgcg agtcgtagat       360
     attcgtcgtg cgtgcgttca ctaagtccga aattagcaag acactttaaa cgtaatgtgg       420
     ttgcgtcgtc ccagtccttg attagaagga gggcgagcac caattattga tatcgcagtg       480
     tatcaagata ccgccgcgtg tgtgaaggtt gcctatgcct gctgcagggc cgttgtgttc       540
     ccattttctg ggtgtttagg caagtgccat ataagaaagc ctccgtagtt cggactctgc       600
     atattgtatt tcggataca                                                    619
//
ID   BEL-877_AA-I repbase;    DNA;    INV; 6126 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-877_;
KW   BEL-877_AA-I; BEL-877_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6126
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6126
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (19-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..2523
FT                 /product="BEL-877_AA-I_1p"
FT                 /translation="MQLRSGKLKRVLFLSPVASPFGSPAVFSTPRGATAGA
FT                 VLPPVQSVREQREEQEARHRDSKMADSVAALEKCLESTAGKVDRIRRAIVA
FT                 ADHDYGKFIIHALELYVRTVDAANDEDGSLLNRIYLVDPTQRNIFEPKYID
FT                 FEELYQFVRISLSEMIQQYEDDQKAVADAAIAAKSKFEKANSICQPSTSGI
FT                 VPPMHMVPSLLLQQAPLPTFDGSYENWYKFRDRFTDIVDKCTNDSPATKLH
FT                 FLDKALVGKAKGVIDQQTLNDNNYQGAWIILAKKFENLRMVVQTHITQLLS
FT                 LKPMTKGNHADLMGLLDTVEKRLQSLEFHNLKMMDRLSEAIIVTLVITKLD
FT                 ADTRRAWEATAEHGQLPEYKKTMDFLREHCYMLERCEQSTSLRPKSVPSNP
FT                 RNPAVSSKVHTATVQETNSCLLCNDNHTIDTCNMFKELSVNNRYSKAKQFG
FT                 LCFACLKRGHRTANCKIDSKHLCECKKKHHPLMHFEAKKTPETATGNEIRT
FT                 VPERSSASSSEPQTVAKCEIQQESSVAVKQVLLATALIDVFDSRGVAHRCR
FT                 ALLDSGAMASFVSERMCDFLGRRRQRSKNDGEVQGYSCREFQIGGLQFSLG
FT                 LLGGAPYHWRVTIIEGECSCLADSERSEVGGPEVF"
FT   CDS           2225..6100
FT                 /product="BEL-877_AA-I_2p"
FT                 /translation="LMCSTAEAWPTGAVLCLIPVQWQVSCRKECVTSWVVG
FT                 VNGARTTVRFKVTAVVSSRSAAYSFPLDCLVVPRITGALPSLKVNAAAWPI
FT                 PKDLKLADPKFFDPSRVDMLVGAEKFYELLQSRKIPIGEGLPLLQESLLGW
FT                 LIAGPVYDTQGFVSVQVNQNATIDGSEGRLEELMKRFWMIDEQTYDPLEND
FT                 DCERHFKATYARADDGRYIVQLPFREDAGQLGDSRAQAEKRFKALENRVDK
FT                 NPELKQMYARFMHEYLELGHARILKEDEVHIEGAYYLPHHSVLKPDSSSTK
FT                 LRVVFDASAKSTTSLSLNDLLMDAPIVQSALFDIVLRWRLPKYAFTGDVKQ
FT                 MYRQVLVHSDHTKFLRCLFRDSRSQPIMDLELQRVTYGVGPAGFLATRSLI
FT                 QLAKDEEQNFPRASAVVLKSFYVDDALTGADTLQEAVMLRKDLQELLCRGG
FT                 FKLHKWCANDPAILEGVPLEDREKLMNFEDSDVNEVIKTLGLLWDPASDCF
FT                 VFRVKQLTGSSEPPTKRQVLSEIAKLFDPLGVLGPVIVLAKLIMQRLWQKS
FT                 IDWDEPIPSEELDNWNKLRSELCGINNMRIPRRVTVDNPSVFELHGFSDAS
FT                 RAAYGCCVYLRSVSVDGVVEVTLLCGKSRVAPLKELNRKEKEGAPPEELTI
FT                 PRLELCAAILLANQVKTVRETLGIDISRVVLRSDSSIVISWIKKTKPNLPV
FT                 FIRNRIAEIRGLSANTEWLHVGTRENPADLVSRGVFPADFLKSDLWWNGPG
FT                 FLRSSVDETANDEQEDYSESPVAVEAMAVVIPSCDDLYQVIQNSSNFRRLQ
FT                 RVFGYVMRFIRNCRAKRSGGELRRGNLTVADHRDSLYTMVRIVQHVVYREE
FT                 INSVLKGDPVKGKLRNLCPIFDATEKLLRVGGRIKNAVLPYDQKHPLILPE
FT                 KNQFTDTVIEAIHREELHVGQNGLLAKVRQHFWPVNAKRTIKRIVWRCITC
FT                 FKRKPRDVEQLMGNLPIARVTAAEPFVRTGVDYAGPFHLKQGRLRAPIKSY
FT                 VCVFVCMTTKAIHLELVSSLTADGFLGALHRFVGRRGNVSEMFSDNGTNFI
FT                 GGERQLTELRQLLKSQLLENKIDDFCQPRGILWRFNPPKAPHQGGLWEAGV
FT                 KSMKTHLYKIMNESYFNYEEMTTLLVQIEAILNSRPLIDQGNDPTGYEALS
FT                 PAHFLIGRELTAVAEPLYDGIKENMLSRYQLVQRRKQSFWKRWSSEYITGL
FT                 QRRSKWFKTPTVLREGLLVIMKEDDLPPQTWRLGRIVKTHPGDDGVVRVVT
FT                 VKTTSGTYKRATTKIAILPVEDVERDQDVNG"
XX
SQ   Sequence 6126 BP; 1665 A; 1304 C; 1697 G; 1460 T; 0 other;
     tttggtcctt gagaagccgg atgatgaatc gcgcggaaat cggtgatcgt tcgtgaaatc        60
     ggtggaaata aaagtgattt ctggctctgg aagaagtcag aaaagtgaat tagtgtcggc       120
     cagcgggcgg acaaacgatt tgttccagcc gacttagcga cgaagaaagg tgatttccgg       180
     ctctggaaga agtcggaaaa tgtgcttcat tctgctgggg taaggcagac gtgtttttgc       240
     aaagccacga gtgtctaaaa gtgattccca gctccggaag aagttcgaaa agtgtggtaa       300
     atttgagagc tgatgcgcgg ctgatgaagt gtggttcgcg gctctggaag aagccgaaat       360
     ttgggtttgc agccgtcagc gaaagtctag tggtcgcaca gcgacaaaga aaagtggttc       420
     cggctccgga agaagccctc aaagtgtttg gtgtggtggg cggtccctcg cagtggaggg       480
     caaagaagag ccagaaaaag tgattcgctt ctagcaacgg cagccatttt gtgctagccg       540
     agaagaaacc gcatggtgat aattcgacgc cggtgctccg gtgagtgaag aaagaataca       600
     ggaagaaaga aaagtgaaag tggcatgcag ttgcgttccg ggaagctgaa gagagttttg       660
     ttcttgtcgc ccgttgcctc tccatttgga tcccccgctg tgttttccac tcctagaggt       720
     gcaactgccg gagcagtttt gccaccggtt cagagcgtgc gcgagcaaag ggaagaacaa       780
     gaagctcggc atcgggattc gaaaatggct gattcagtgg ctgctcttga aaagtgtttg       840
     gaatcaacag caggtaaggt cgataggatt cgacgagcga ttgttgctgc cgaccatgat       900
     tacggtaagt tcatcataca tgcccttgaa ttatacgttc gtaccgtgga tgcagccaat       960
     gatgaagacg gtagtttatt gaatcgaata tatctggttg atccaacgca acggaatata      1020
     tttgagccca aatacattga ttttgaggag ctgtatcagt ttgtacgcat ttccttatcg      1080
     gagatgatac agcaatatga agacgaccag aaagctgttg cagatgcggc cattgcggcg      1140
     aagtcgaaat ttgagaaggc caattccata tgccaaccaa gcaccagtgg aatagtgcct      1200
     ccaatgcaca tggtaccgtc tcttttgttg caacaagctc cgctaccgac atttgatggt      1260
     agctacgaaa actggtacaa gttcagagat cggtttactg atattgtgga caagtgcact      1320
     aacgattcgc ctgccacgaa attacatttc cttgacaagg ccttagttgg aaaggccaaa      1380
     ggagttattg atcaacagac gttgaacgat aataattacc agggagcttg gatcattctt      1440
     gcaaagaaat tcgaaaattt gcgaatggtc gttcaaacgc acattacaca gttgctatcg      1500
     ttgaagccga tgactaaagg gaaccatgcg gatttgatgg ggttactcga taccgtagaa      1560
     aaacgactac aatcactaga gttccacaat ttgaaaatga tggacaggct gtccgaggcc      1620
     atcattgtga ctctggttat cacgaagttg gacgcggata cccgtagagc atgggaagcg      1680
     accgcggaac atgggcagct tccagagtac aaaaagacca tggacttcct ccgagaacat      1740
     tgctatatgc ttgagcgatg cgagcagtcg acgagtctga gacccaaaag tgtaccctct      1800
     aatcctcgaa accctgctgt cagcagcaag gttcacacag cgacagttca ggaaaccaac      1860
     agctgtctac tctgcaacga caatcatacg atcgatacgt gcaacatgtt caaggagttg      1920
     agcgtaaaca accgatattc gaaggccaag caatttggtc tatgctttgc ttgccttaaa      1980
     cgaggacacc gaactgctaa ctgtaaaatc gatagcaaac atctgtgtga gtgcaagaag      2040
     aagcatcatc ctttgatgca tttcgaagct aagaagacac cagagacggc aacgggcaat      2100
     gagataagaa cggttcctga gagatccagt gcatccagta gcgagccgca aaccgtggcg      2160
     aagtgtgaaa ttcagcagga atccagcgta gcagtgaaac aagttttgtt ggcgacagcg      2220
     ttgattgatg tgttcgacag cagaggcgtg gcccacaggt gccgtgcttt gcttgattcc      2280
     ggtgcaatgg caagtttcgt gtcggaaaga atgtgtgact tcctgggtcg taggcgtcaa      2340
     cggagcaaga acgacggtga ggttcaaggt tacagctgtc gtgagttcca gatcggcggc      2400
     ttacagtttt cccttggatt gcttggtggt gccccgtatc actggcgcgt taccatcatt      2460
     gaaggtgaat gcagctgcct ggccgattcc gaaagatctg aagttggcgg acccgaagtt      2520
     ttttgatcca agtcgagtgg atatgcttgt cggagccgag aagttctatg agctgctgca      2580
     gtcgcgcaag attccaattg gggaaggtct cccactgttg caggagagct tgttgggttg      2640
     gttgatcgcc ggaccagtgt acgacacgca gggctttgtc agcgtacagg tgaatcaaaa      2700
     cgcgacgatt gacggatcgg aaggtcgact agaagagttg atgaagcgat tttggatgat      2760
     cgacgaacag acgtatgatc ccttggaaaa cgacgattgt gagcggcatt tcaaggcgac      2820
     ttatgctcga gctgatgatg gccgatacat tgtgcagcta ccctttcgag aagatgcggg      2880
     tcagctgggc gattcccggg ctcaagcaga gaaacgattc aaggcattgg aaaacagagt      2940
     agataagaat cctgagttga agcaaatgta cgctcgcttc atgcacgagt acctcgaact      3000
     tggccatgca aggattctga aggaagacga agtacatatt gagggggcat attatcttcc      3060
     tcaccattcc gtgttgaagc ccgacagttc gtcaacgaaa ctgcgagtgg tgtttgacgc      3120
     ctccgccaag tctactacga gtttgtccct taacgatctt ttgatggatg cgccgatagt      3180
     ccagagcgct ctatttgaca tagttctgag gtggagattg ccaaaatatg cctttactgg      3240
     agacgtgaaa cagatgtaca gacaggtgtt agtacattct gaccatacga aattcttgag      3300
     atgtcttttt cgagatagcc gatcccagcc gatcatggat ttggaactac agcgagtgac      3360
     gtacggcgtg ggtccggccg gtttcctggc aacgcggtcg ctgattcagc tggccaagga      3420
     tgaggagcag aacttcccaa gggcgagtgc agtcgttcta aagtctttct atgtggatga      3480
     tgcgcttacc ggcgcagaca ctctccagga agcggtgatg ctgaggaagg atctgcaaga      3540
     actactgtgc cgtggaggat tcaagctgca caaatggtgt gccaacgatc cagcgattct      3600
     tgaaggagtg ccattggaag atcgtgaaaa gctaatgaac tttgaagata gtgatgtgaa      3660
     tgaagtgatt aagactctcg gactattgtg ggaccccgcg agtgattgct ttgtgtttcg      3720
     ggtaaaacaa ctgacgggca gttcggaacc accgacaaag agacaagtac tttccgaaat      3780
     tgccaaactt tttgacccgc tcggtgtctt gggtccagtg atagtgttgg ccaagctaat      3840
     aatgcagcga ctgtggcaaa aatcaatcga ctgggacgaa ccaattccga gtgaagaatt      3900
     agacaattgg aacaagctgc ggtccgagtt gtgtgggatc aataatatgc ggattcctcg      3960
     tcgcgttact gtcgataatc cgtcggtgtt tgagttacac ggtttttcgg acgcgtcgcg      4020
     tgcggcatac ggatgctgtg tgtacttgcg tagtgtttcc gtggatggcg ttgttgaggt      4080
     gacattgctg tgcggcaaat ccagagttgc gccgctcaag gaactgaacc gaaaggagaa      4140
     agaaggagca ccgccggaag aactaacgat accgcgattg gagctgtgtg cagccatcct      4200
     gcttgcaaac caagtgaaaa cagtgcgcga aaccttagga atcgacattt cacgtgtcgt      4260
     cctgaggtcc gattcgagta tagtgataag ctggatcaaa aagacgaagc caaatctacc      4320
     agtgttcatt cgtaaccgta tcgctgaaat ccgtgggttg tccgccaata ctgagtggct      4380
     tcatgttggg acaagagaaa atccagcgga cttagtgtca cggggggtat ttcctgcgga      4440
     ctttttgaaa agtgacttgt ggtggaacgg accgggattt cttcggtcaa gtgtagacga      4500
     gacggctaat gacgaacaag aagactatag tgaatcaccg gttgccgtcg aagcgatggc      4560
     agttgtgata ccgtcatgtg atgatttgta tcaagtgatt cagaacagta gcaactttcg      4620
     acgattacaa agagtgtttg gttatgttat gcgcttcatt cgtaactgcc gtgcgaagag      4680
     aagcggagga gaacttcgtc gtggaaattt gaccgttgcc gatcatcgtg actcgctgta      4740
     cactatggtg agaatcgttc aacatgtagt gtaccgcgaa gagatcaaca gcgtattgaa      4800
     gggtgaccct gtaaaaggta agctgcgcaa cttgtgtcct attttcgatg caacggagaa      4860
     actacttcga gtagggggta gaatcaagaa tgccgtgctt ccatacgatc agaagcaccc      4920
     gttgatctta ccggagaaga atcagtttac ggacactgtc atcgaagcaa tccaccgaga      4980
     agaattacat gttggacaga atgggctgct agcgaaggta agacaacatt tttggcctgt      5040
     caacgccaaa cgaaccatca agcgtatcgt ctggagatgc atcacatgct tcaagcgcaa      5100
     accaagagac gtcgaacagc tcatgggcaa tctaccgata gctcgtgtca ctgccgctga      5160
     accctttgtt cggaccgggg tagattacgc aggccccttc catttgaagc aaggtcgctt      5220
     gagggcacct atcaaatcat atgtatgtgt tttcgtatgt atgacaacaa aggcaattca      5280
     ccttgaactg gtgagttccc taacagctga cggcttccta ggagcattgc accgctttgt      5340
     tggacgccgc ggaaatgtaa gcgaaatgtt ctcagacaac ggaacaaatt tcattggagg      5400
     cgagcgccaa ctgaccgaat tgcgacagtt gttgaagtcc cagttattgg agaataagat      5460
     tgacgatttc tgccagcccc gtggtattct gtggagattc aatccaccga aggcgcctca      5520
     ccagggtggg ctctgggagg ccggagtgaa gagtatgaag acccacctgt acaaaattat      5580
     gaacgaatca tattttaact atgaggaaat gacaacactg ttagttcaga tcgaggccat      5640
     cctaaactct aggccgttaa tcgatcaagg caacgacccc acgggatatg aagcattgag      5700
     tcctgcccat tttctaattg gtcgcgaatt gacagcagta gcagaaccac tttacgatgg      5760
     gatcaaggag aatatgttgt cacggtacca gttggttcag aggcgcaagc aatcattttg      5820
     gaaaagatgg tcgtctgagt acattactgg attgcaacga cgcagcaaat ggttcaagac      5880
     tcctacggtg ctgcgtgaag gtctactggt gattatgaag gaggatgatc tgccgccgca      5940
     gacttggaga ctaggtcgga tcgtcaagac tcatcctgga gacgacggtg tcgtacgcgt      6000
     ggtcactgtt aaaaccacca gcggcacata taagcgagca actacgaaaa ttgccattct      6060
     acccgtggaa gatgtagagc gtgatcagga cgtgaatggt tgagccatcc ggctccggcg      6120
     ggtgga                                                                 6126
//
ID   BEL-877_AA-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 25.10, Created)
DT   19-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-877_AA-I;
KW   BEL-877_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-236
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-236
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3007-3007 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 236 BP; 59 A; 46 C; 41 G; 89 T; 1 other;
     tgttaagtga tccaatattt catttgttgc aagcattttt ttctcagtgt agcgcccgtt        60
     aaattcctat ccctcgaaag aagcaactat cttgatattg tttttgtttt cttgaaaggc       120
     gctttccgtt tccatgtaga gaaattttca gtttttacta aagttacccg tcgtgtacgg       180
     tcggaaaaat acagtccacg ttttttattt ttgaccgcaa agattcgtcc gaamca           236
//
ID   BEL-878_AA-I repbase;    DNA;    INV; 5777 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 25.10, Created)
DT   20-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-878_;
KW   BEL-878_AA-I; BEL-878_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5777
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5777
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2983-2983 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 5777 BP; 1489 A; 1752 C; 1254 G; 1282 T; 0 other;
     ctggtccttc gaaccggata gcgtgaactc cgctagtccg ccggccagga atcttcgccg        60
     aatccgccag atccacgcca gccacgtgac gtagaggtta gctgtccaga actttccacc       120
     aatacaaggc atacgaattg ccttacgaag gtaattatat ttccaacgcc cttacccctt       180
     ctcgtttgag ctgcgcggtc tttcgccttc cagatcactt cacgtcttcg tcctcttcat       240
     tccgccacga tgtccacgga acgccgcatc aagtgcctca agaaccgctt gaagggcctg       300
     ctgacgtcgt tcaacctcgt caaaaccttc gtgagcgaat acaacgagga acgagacgct       360
     ctacaagtcc cggtgcgttt ggagcacgtg atcaacctct ggaaggacgt tagtgcagct       420
     caagaagaac tccaatcgct ggacgaggaa ggcttggagc agtacctgaa aattcaaacg       480
     gacttcgaga atgggtactt ccatgtcaag ggattcctgc tctcggccaa taagcccact       540
     actgccaacg ctactcctgc tcttcagcaa gccgccccag tccctccaac gtcttcggtt       600
     cgactacccg atgtgaagtt gcctgtcttc tctggccagc tcgacaactg gctaaacttc       660
     cacgatctgt tcgtctctct cgtccactcg tcgcacgaac tctcgagcat acaaaaattt       720
     tattacttgc ggtcttcctt gtccggagat gccctcaagc tgatccaaac cattgccatt       780
     agcgccgcaa actaccaggt ggcttggaac ttgctggtag accactacca gaatcccgct       840
     agactgaagc agtcttatgt tgactccctc ttcgaatttc gctccctaaa aagggaatcg       900
     gcttctgaat tgcactcgct tgttgagcag ttcgaagcga acgtccgtgt actcaaccag       960
     ttgggagagc ggacggagta ctgggatatc ctcttgatcc gtatgctgag tatcagactc      1020
     gattcaacca ccagacgtga ctgggaggag tattcgtcgt cgaaagcaaa cgtaaccctc      1080
     aaggatttga cgactttcat ccaacggaga gtcacagttc tgcagacgat caacaaatca      1140
     cccgaagttc caacccaaac tgcccctaag aaaccagctt ttcgtcccgt cgcaagccac      1200
     ggggccagcc aacccaacta ccgcaagtgt ctcgtgtgtt ccgaccatca tcctttatac      1260
     cagtgcgccg ttttctccaa gatgaccatc gaagacaagg aaaaggaagt ccgacgccac      1320
     caactgtgcc gtaattgtct gcgaaaaggc caccaagctc gtgaatgccc ctcatctagc      1380
     acctgccgca agtgtagaag ccgtcatcat acgcaacttt gtcccggtga agctccttca      1440
     gtctcgtcga actccaagac ttcagaatct gcaccaccaa aattcacatc tgcccaatcc      1500
     accgaagacc aaccaagaaa cgccgtttct gccatctccg aacctgttag ctgcgcctct      1560
     actggcctga agcggaagag cgtcttgctg gccacagcgg tggtcattct agtcgacgac      1620
     attggaactg agcatatagc tagagcactc ctcgactccg gaagcgagtg ttgtttcatg      1680
     actgaatcac tcgctcaaca gatcaaggcc aaacgcacca aaatccacgt tccgatatct      1740
     ggcatcgggc aatcctcgac acacgctcgt cacaaactcc aatccactgt tcgttcccgt      1800
     ctcagtgact tttccagtgc ggtcgagttc ttggtccttc cgaaagtcac cgtcaaccta      1860
     ccatcaacat ctgtggacat ctcaacctgg gaaattccgt ctgaaatcca acttgcagac      1920
     ccgtcatttt acgacaccaa tcccgttcag ctcgtactgg gagcagaaat cttcttcgac      1980
     ctcttcaaag tacccggtcg gattcaactc ggcgagtccc tgccaaacct cgtcaactcc      2040
     gttctaggtt gggtcgtatc tggagggata accaactgcc aaccagcttc cgtcgtagcg      2100
     aacgtcgcta cggttacaga tctccaccgt ctgatggaaa aattttgggt catcgaagag      2160
     ggcaacgact ccaccaacta ctccgtagaa gaagctgcct gcgaggcaca tttccgccgc      2220
     accgtttctc gttcgagtga cggccgctac aaagttcgtc ttccactgaa gcaagatgct      2280
     ctgatcaccc ttggggacaa tcgccgatca gcacttcgtc gtttccacct catcgaaaat      2340
     cgtctgcaac ggaatcagga cctaggtgac caataccgtg agttcatgcg agactacgaa      2400
     gaactggggc atatgcaaca agtccacgac cacgaagcac cacctacgcc gaactatcat      2460
     ctccctcatc acgccgttat tcgtgaagac agcacgacca caaaggtgcg tgtggtcttc      2520
     gacgcatcct gtcgaaccat cgaaggatca tccctaaatg acgccctaat ggtcggacca      2580
     atcgtccagc aggatttacg atccataatt atgcgctcca ggacccatcc cattatgtta      2640
     atcgccgaca tcaaacaaat gttccgccag attcgcgtgg acgaacggga cacaccgctt      2700
     cagcgaatcg tttggcgatc ttcgccggac gcacccatga acacgtacga gctaaagact      2760
     gtgacttacg gcactgcttg tgcacccttt ttggccaccc gagtacttcg ccagcttgcc      2820
     gacgacgaac aaacccaata tccgaaagct acccaagttc tacgcgagga cttttacgtg      2880
     gacgacctat tctctggagc agacaccgtg gaagaaacca tcaaacttcg taggcagcta      2940
     gattcccttc tttccgctgg aggcttcgag ctgcgtaagt gggcctctaa tgtcgacgcc      3000
     gtcctagaag aagtactgga agacaaccga gcgctgaaga catcggtgga cctagaccgt      3060
     gaccagtgca tcaaaagtct agggctccac tgggaacccg caagcgacca tctacgttac      3120
     aagatcgacc taccgacgaa cgacaatacc ccactcacga aacgaatcgc tctgtcccaa      3180
     atagctcgcc tgttcgaccc acttggcctg gtgggacccg tcattacaat ggcaaaactc      3240
     tttatgcagg agctatggga actaaagacc gacgacggac aaatctgggg ctgggaccga      3300
     gagctaccat cagaatacac gcaacgctgg cacgaatata cttctaaatt accccttctg      3360
     aatgaattgc gcatcaatcg gtacatcttc tgtccaaatt ccacatccat ccaactgcac      3420
     ttcttttccg atgcgtcgga aaaagcttac ggttcctgct gctacatccg ttctactaac      3480
     tccaccggtg tcaccaaaat tgcgctactg actgccaggt ccagggtcgc tcctctgaaa      3540
     cagcaccaaa gcattccacg tctcgagctc tgtggagctc ttctttcggc ggagctgtac      3600
     gagaaggtaa cggcatcctt gaagatcgca gccgagacct acttctgggt ggactcaacc      3660
     atcgtcatca gttggctcaa ctctccacca tcgacatgga acaccttcgt agcgaaccgc      3720
     gtctcgaaaa ttcaacttgc cacacaaaac tgcaactgga accatgtatc gggacagcag      3780
     aatccagcgg accacatttc tcgagggttg ccagcagaag atttcctaca cgacgaactt      3840
     tggtggaagg gcccacaatg gttgacattt gcaccaaaat tctggccatt ccaacaagca      3900
     acagacgaac ctgactacac cgacatccca gaaacccgaa aacattcccc ggtagtgatt      3960
     tcagccaccg aaaacccgac gttcatcgac ctgttcgtca ccaagttctc taactacaac      4020
     aagatgctcc gtgtgacggc ctactgtcgt cgcttcttgc aacactgcag acgcaattcg      4080
     agtccaaata caaccatcat caccaccgaa gaaatacagg ctgcagagac ccaaataatc      4140
     cgcctggtcc agcagcaatc gttcactgcc gagtggaaac agctcgaaca gtccctacca      4200
     gtcccggcga aatctcgcat tcgttggttt aatcccttct tgtcatcgga tcaggtaatc      4260
     cgtatcggtg gcagactgaa tcgagcacag cagcctttcg atagcaagca ccagattttg      4320
     ctaccatcca cccacgcaat ctcctctcta ctcatccgct cgctgcacga aactcatctc      4380
     cacgccgcac cgcaactact gcttaacatt ctccgcctgc ggtattggat aaccggggcc      4440
     agaagcctgg ccagaagaat cgtccaacaa tgcgtcgtct gcgtccggtt acgtccaaaa      4500
     ctcgtccagc agttcatggc cgagctccct gtcgaacgaa tcacagctac aaggccattc      4560
     actatcactg ggatcgatta ttggggccct attccactca aaccgtttca tcgtcgagca      4620
     gcacctggaa aagcatacgt tgcagtcttc gtttgcttct caacgaaggc tgtgcatctc      4680
     gaattggtgg gagacctcag caccgccaag ttcatccagg cactacgccg cttcgtcgct      4740
     cgccgtgggc tgtgtgctga aattttcagc gacaacggca gaaatttcct cggagctgcc      4800
     aacgaactga aacaaatcgt ccaaagcaac cagcatctgc aatcaatcgc cgaagaatgc      4860
     gccaccaatg ggattcgatg gcgcttcaat cctcccaagg cctctcactt cggtggactg      4920
     tgggaggcag caattcactc cgcccaaaag cattttttcc gagtcttggg cagccacact      4980
     cttccgatgg aggacacgca aacgcttctg gcacagatcg agtgttgtct caattctcga      5040
     ccgcttgttc ccctcagcga cgatgcttcg gacttcgaac cgcttactcc ggggcacttc      5100
     ctcactgggt cgtcgttgaa ggccgttccc gacgttgatg tcaccaaaat tccactgaat      5160
     cgcttgaaaa ttcaccagca aatccaaaaa ctgctacaac aaatttggca gcggtggcac      5220
     gtcgaatatc tctgcactct ccagtcccgc tcgaagtgga tcaaccctcc tacaaccatc      5280
     aaacggaacc agcttgtgct gctgaaagag gacaacacac cgcctttcca gtggcctact      5340
     gcacgggttc tcgaaacgca tcctggagca gacggggtaa cgcgagtagt gaccctaaaa      5400
     acgccagccg gagagtacac cagaccagtt tcgaagatct gcctactgcc aattcctcct      5460
     tccgatgtca acattccaac gcaaacaaca acaatccagc attaattgaa gatttccaac      5520
     gatgagcacc taaaaataaa gaatttcaag gtccttttac caaaaggaca aggtaagcac      5580
     ctgtcctatt agtttagttg cctttgaacc cgctaccggg tcttatgttt tgattccagt      5640
     agtgcaatcg ttcgtcacac cacaagcatc aaatgacgtt ttccaccact acatcgatca      5700
     gctagaggga aatcatcaca atcatcatgt tgaacatcga cgcaactgtc agagttcgat      5760
     cttcgacggg gccagga                                                     5777
//
ID   BEL-878_AA-LTR repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 25.10, Created)
DT   20-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-878_AA-I;
KW   BEL-878_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-525
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-525
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3008-3008 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 525 BP; 163 A; 105 C; 112 G; 145 T; 0 other;
     tgttcgcaca agcgaagaag gagacggatt cgacaccttt tatggcatca tcatcatcga        60
     tcctcgagtt gcgcttcccc cgttcgtcga ttaccactac tacgacagac gacagcctgc       120
     gttttttgac gtttcaagtt ttccgtccgc catcaacttc cgtcaagtga cacctatata       180
     agtcctcagc ggcccagata ccacctcttt tttcgtcttc gatccaaccg gcaggtggaa       240
     ccccgatcat cgtgaacgag tggttgcaac gagaaaattt ggtcattgaa aggaaaattt       300
     gtgaaagtga actaaagaat ttgaatttag taaattaaat taaagtgaat aaattaagaa       360
     ctattgtagt aaagtggagt aaagaaaaat aaagtttagt gaatctattg aactattaac       420
     ctatatgaaa cgtggtgtaa gtgtctgacg gactgtaaag gaatttgaga gaagggaagg       480
     ttcctgcaaa taaatttgtg tctccaaccg ctgtgctaat cgaca                       525
//
ID   BEL-879_AA-I repbase;    DNA;    INV; 8649 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 25.10, Created)
DT   21-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-879_;
KW   BEL-879_AA-I; BEL-879_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8649
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8649
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (21-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1871..3064
FT                 /product="BEL-879_AA-I_1p"
FT                 /translation="EFESSALKAVSSLMLDPNNIKVIMERLENRFGRAEMV
FT                 YAGLLKDIFQIKTPRYDNPHTIVDFIGAIGNLITNMKSLNKPEYLNDQRLL
FT                 RDLTSKLPGNLKGRWLEYLEDQKSLATLQAPYTSPTISEFYDWLVPHENLA
FT                 TVLISEREPRAEKTKQINFHDKKVLSTKCLICKSAHKLTDCFKFKQFDVVK
FT                 RREIASKEKLCFACCNSVTHMALNCKYAKPCKINGCGRKHHPLLHLNQDFS
FT                 KGGKEETVNCHLRPKNKIFYEIVPVILKHQDKEIRTFAFLDSGSSASLIQQ
FT                 DLINKLGVVGVKSPMTLAWTNGKTIQEKGSHEVKIQISGLNTKTYTLNNLN
FT                 TVDKLSLPIQSLNKEEIMIRYPYLNDIDIQGYSNAQPRLLIGQPHAFLMIG
FT                 SEGR"
FT   CDS           3068..8617
FT                 /product="BEL-879_AA-I_2p"
FT                 /translation="RGFNEPIARRTKLGWVVHGQLNKHPRSTKVNHIFMIN
FT                 DFESKNNEAAMREMMSKYFTTEGFGVKIPGEQLISKQDERAIEIMKNTTKP
FT                 IGKGYEIGLLWKNETTSFPDSFQSALSRLLIQEKKMKSNPDLRTWYNSKID
FT                 EYLQKGYARKLSPHEYMTTTKKTFYLPHFVVVNPNKQERKHRLVFDAAAKV
FT                 QGESLNSKLLTGPDSTESLLGILIRFRENRFAITGDIQEMFSRISIRKEDQ
FT                 ESQRFLFRHESNARLDVYIMNVMTFGATCSPACAQYVKNLNASKFADQNSV
FT                 AVRAIIRNHYVDNYLDSFEHSDEAVKTITDVIDIHEYGNFRIRDFVSNSVE
FT                 VMKKLPENRLSHSEFVWLGNPEEAYEKILGLNWDFKNDVIKINIKLPNINE
FT                 EIPTKRKVLSMAMSVYDPLGLISNITIESRIIMQELWKTGITWDDPIPEDI
FT                 NRKWMNWLQRLGTLKDLEFKRCYSTGHKIVRRDLHVFCDASELAFACVIYL
FT                 VTTHVHGVDVSLVAAKSRVAPTKPLSIPRLELQAAVLGSRLAQTVTEQLRL
FT                 SINETIFWSDSTTVLSWINSEARKYKPFIQHRIGEILETTTERQWRYVDSK
FT                 NNPADEGTKIILNNSIWITGPTFLKESASSWPARKIKGNTTEEIKPIFLIQ
FT                 HPNKPIKTLFNINWCSDWSRLKRAVCIGIKYIDWLKSRSKGSTFNNAITSK
FT                 DMDMAEKYLIKQAQKEAFSEEIFNLSNGLPLDKESRILKYTPVMFPDGIIR
FT                 SDTRFKNAKCSPYEMKYPYILPKNHHVSTLIIKDYHETFKHQKTNTVLTEI
FT                 TQKYRIMHLRSMLTKVTSNCQYCKNKKAEPQIPKMADLPQCRMQPYYKPFT
FT                 FTGVDYFGPYFVSIGRQSHKRWGVLFTCMTTRAIYLELANDLSADSFMICL
FT                 NSLQCRRGRVSELYSDNGTNFVGAHNEMKAIQYRLANKGIQWHFIPPASPH
FT                 FGGSWERLVKEVKSLLPNNTMPEHVLRGLLTETEKLVNSRPLTNIYLENDD
FT                 DEPLTPNHFLMGCSATSEPSLDDVTISEATRQQWKKIQHYAKSLWDRWVKE
FT                 YLPTLGKRSKWNSDIPPIQLGDIVMIMDEDRKGKWKKGVIKEVHTASDGRV
FT                 RSAVVKTIDGETKRPVCKLAVLDVKPPVNDSNINKTYKPTQFVGHVHSEKN
FT                 KSCGRKLKKINPEWGKRKFVDIDKVKELSSKIKAPKRQKFRAYTWTQLSII
FT                 LYYFLMIFGQVFCFDNRGLIAFDCGNPEINMTSYSLMDVASCVPPTNNITT
FT                 KEVQIQVLQKSIKSETKAYQCKVIIKRSIKHCGMHSHTSDYERGYEYIVKD
FT                 FTSEECRQSQAMGIVKLTHDHQLREIKRNATTRGEALIVGAVWGSNCKGGT
FT                 YRTPIYTWVDALVYYEYEITLHDYIVTVDSENDAIYLKNGLTCRYSQGRCL
FT                 DSEDGYITWDINYNLKCEESDFEIIYEGTVNKTNNEIPGENNKSLNAVYST
FT                 VSNTHLFSIRAKEQTKVCGHIGFSTDHPRIIIVEIGTINSPFRRKALSGKN
FT                 FDLFTYFNSKITLVENYIGQSMTELYNTVMTEMCKVDKTLMETKLTLARLN
FT                 PTEFVTSIIKRSGFTAVVAGEVLHILECKPVYVTPRAEDLCYQEIPVSYNN
FT                 QSMFIAPVTHILQNRGTQIDCTPLLPAKFQIGGRWYTADGRIRETIAPLKL
FT                 TTDILTTWSYTPLPNLMNSGVYDAESVEKMRNMIYEQGDKRIASNVLHKIL
FT                 IGQKPDFQGFRFEALISDRMIENVFEKYWSKLLSWSSWLGNITSTFIGIYM
FT                 IGRLVKFAIDTIMHGRILYEIYGLGWQLLASFWDSFTNFLSHRNVMKRTQN
FT                 NTEVEEIAIADDTTGSIYPNISHKFNDE"
XX
SQ   Sequence 8649 BP; 2982 A; 1573 C; 1781 G; 2313 T; 0 other;
     ttttggtggc tccagagagg acttggagtt ttgttttgga aaatttgttt gaataggtgt        60
     gctgacgcct tacaataagt cagcaaagaa gacaatccca caagggatta gtgcaaaccc       120
     agagaggacg tgaacgagga atgccgattg ggccattgga gccagaaaag gagtcaagcc       180
     agtgaagctg ctcccattgg gtcataagtg ccaccaggag tagtccgcat aggaactcca       240
     aaaatcaatt caaaagaatt gatatccttc aaagggaagg atacagaagg caatccacga       300
     taggaacgcc gattgggcca ttggagccag aaaaggagtc aagccagtga agctgctccc       360
     attgggtcat aagtgccacc aggagtagtc cgcataggaa ctccaaaaat caattcaaaa       420
     gaattgatat ccttcaaagg gaaggataca gaaggcaatc cacgatagga acgccgattg       480
     ggccattgga gccagaaaag gagtcaagcc agtgaagctg ctcccattgg gtcataagtg       540
     ccaccaggag tagtccgcat aggagatcca aaagactact cttagctcac catttctcga       600
     tcatgaccac cttggatgac gagataaatc atatggttga gtactttaac gaaattgaca       660
     aacaattcga gaaaaccaaa aaaacgataa aatatcaaaa ctgggctaaa tccgacttgc       720
     ccattggagt aattcattcg tcgaaagcct tctccataaa cctttgggtc ggaacaccca       780
     aggaacggac catcaatcaa agcgtcacaa agattgttcc cctcaaagca actagaagga       840
     taggaccaat caggcgtcaa taatcaaagg aaattcaaat ccgtcgacta tccgcccttc       900
     cgagagggcc tagtttggga cggttctgct gagattcgtg atcgtcttgg gctcccgcct       960
     cagagcaggc cagccagacg gtgcataaag catctgatcg aaagaaattc aaatccgtcg      1020
     actatccgcc cttccgagag ggcctagttt gggacggttc tgctgagatt cgtgatcgtc      1080
     ttgggctccc gcctcagagc aggccagcca gacggtgcat aaagcatctg atcgaaagaa      1140
     attcaaatcc gtcgactatc cgcccttccg agagggccta gtttgggacg gttctgctga      1200
     gattcgtgat cgtcttgggc tcccgcctca gagcaggcca gccagacggt gcataaaaca      1260
     tctgatcgaa agaaattcaa atccgtcgac tatccgccct tccgagaggg cctagtttgg      1320
     gacggttctg ctgagattcg tgatcgtctt gggctcccgc ctcagagcag gccggccaga      1380
     cggtgcgtat atcatcccaa gggatagcag ataagaacaa attcagagta agaagtttat      1440
     accctttatc ttatttttaa actaaagaaa tgaagaaatc atattttatt aagaacagag      1500
     ttggtcactg tcgactttgt gacaaaccgg acaatgaaga cttatttatg gtagcctgtg      1560
     atgaatgcga tcgctggttc cacggaacct gtgttgggct tacacaggct ccacaaaaaa      1620
     ctgaacgttg ggtctgtgtg aaatgttcgg acatggaaac cttaataaaa ggcctcactt      1680
     tgaaggcgga cattaatgta gcacagagtt caaagtctat cgatagtgat ccatataagc      1740
     acttaaataa atctctatgt agaccttctc tgatggagct tccttatttt gacggatcac      1800
     acaaggtgtg gccaagattt aaaatgacat ttgatcaaac aaccactgca ggtggttttg      1860
     gtgatcttga gaatttgaat cgtctgcttt aaaagccgtg agctctctta tgttagatcc      1920
     caataatatc aaggtgataa tggaacgcct tgaaaataga tttgggagag ccgagatggt      1980
     atatgcaggg ctcttaaaag atatatttca aattaaaacc cctcgatacg acaaccctca      2040
     tacaatagtc gattttattg gagcaattgg gaatttaatt actaatatga agagtttgaa      2100
     taagccggag tatctaaacg accaaagatt acttcgagac ttaacttcaa aattaccagg      2160
     aaatttaaag ggaagatggt tagagtatct agaagatcag aagtctttgg caacacttca      2220
     agctccatac acatcaccaa ctatttcgga attttatgat tggcttgtgc cacatgaaaa      2280
     tttagctacg gttttaatat cggaacgcga acctagagcc gaaaagacaa aacaaattaa      2340
     ttttcacgat aaaaaagttt tgtcaaccaa atgcttaatt tgtaaatcag ctcacaaact      2400
     tacagattgt tttaagttta agcagtttga tgttgttaag cgacgtgaaa tagcctcaaa      2460
     ggagaaattg tgttttgcat gttgcaattc agttacacat atggcattaa attgtaaata      2520
     tgcgaaacct tgtaaaatta atggatgtgg tagaaaacat catccgttat tacatttgaa      2580
     tcaagatttt tctaaaggtg ggaaggaaga aacagttaat tgtcatctta gaccgaagaa      2640
     caaaatattt tatgaaatag ttcctgttat tttgaaacac caggacaaag aaatacgaac      2700
     ttttgccttt ttggattcag gatcttctgc tagtttgatt cagcaagatt taataaataa      2760
     actaggagtt gtaggcgtca agagtcctat gacattagct tggacaaatg gcaaaaccat      2820
     tcaagagaaa ggaagtcatg aagttaaaat acaaattagt ggtttgaata ccaaaactta      2880
     caccttgaat aatcttaaca cagttgataa attatccttg cctattcaat cgttaaataa      2940
     agaagaaatt atgattcgat atccatacct caatgacatt gatattcagg gatattctaa      3000
     cgctcaacca aggttgttga ttggacaacc acatgctttc cttatgattg gctcagaagg      3060
     aaggtaaaga ggttttaacg aaccaatcgc tagaagaact aaattagggt gggtcgtaca      3120
     tggtcaacta aacaaacatc ctagatccac caaggttaat catattttta tgattaacga      3180
     ttttgaatct aaaaacaacg aggcggctat gagggagatg atgtcaaagt attttaccac      3240
     tgaaggattc ggagtgaaaa ttccagggga acaattgata tctaagcaag atgaacgagc      3300
     aattgagatc atgaagaata ctactaaacc tattgggaag ggctatgaaa tcggattact      3360
     atggaaaaat gaaaccacct catttcctga tagcttccaa tcagctttat caagattact      3420
     gattcaggag aaaaagatga aatccaaccc agatttacga acatggtaca actcgaagat      3480
     cgatgaatat cttcagaaag gttacgccag aaaattaagt ccccatgagt atatgacaac      3540
     tacaaagaaa acattttact taccccattt tgttgttgta aacccgaaca aacaagagag      3600
     aaaacaccgg ctggtctttg atgcagctgc taaagttcaa ggtgaatctt taaattccaa      3660
     acttctcacg ggtcctgatt ctaccgagtc gttattagga attttaataa gattcagaga      3720
     gaatagattt gctatcacgg gagacattca agaaatgttt agccgaattt cgattcgaaa      3780
     agaggaccaa gagtctcaga gatttttgtt cagacatgag tccaatgcaa gactcgatgt      3840
     ttatatcatg aatgttatga ctttcggagc tacatgttct ccagcatgcg cacaatatgt      3900
     aaaaaactta aatgcttcga aatttgcgga tcagaattca gtggcagtga gagcaatcat      3960
     aagaaatcat tatgtggata attatctaga cagttttgaa cattcagatg aagcagtcaa      4020
     aaccattaca gacgttattg atattcacga atatggtaat ttccgtatca gagattttgt      4080
     gtctaactcg gttgaagtga tgaaaaaact cccagagaat cgtctatccc attcagagtt      4140
     tgtctggctt ggaaatcccg aagaagcgta tgaaaaaatt cttggcttaa attgggattt      4200
     caaaaacgac gttattaaaa taaatataaa attacctaat atcaacgaag aaatacctac      4260
     caaaaggaag gtactttcga tggcaatgag tgtttatgat ccgttgggac ttatttctaa      4320
     cattacaata gagtctcgga tcatcatgca agagttatgg aaaacaggga tcacatggga      4380
     tgatccaatt cctgaggata taaaccgaaa atggatgaat tggttacaac gcttaggcac      4440
     gttgaaagac ctcgaattta aacgatgtta ctcgacgggc cataagatag taagaagaga      4500
     tttacatgtc ttctgtgacg cttcagagtt agcctttgcc tgtgtcattt atttggtaac      4560
     tacacatgtt cacggagtag atgtgtcatt agtagctgca aaatctagag ttgctccaac      4620
     taaaccttta tctattccac gtttagaatt acaagctgct gttctggggt ctaggctagc      4680
     acagaccgtg acagaacaat taagattatc aataaacgaa acaatctttt ggtctgactc      4740
     aactactgtt ttaagttgga ttaattctga agccaggaaa tataaacctt tcattcaaca      4800
     tagaatagga gaaattcttg aaaccactac agaacgacag tggcgttatg tggactcaaa      4860
     aaataatcca gctgatgaag gaacaaaaat aatcctaaac aattccattt ggattactgg      4920
     cccaactttt ctcaaagagt cagcatcaag ttggccggca agaaaaatca agggtaacac      4980
     gactgaggaa ataaagccaa ttttcctaat tcaacacccg aataaaccga tcaagacttt      5040
     gtttaacatc aactggtgtt ccgattggag tcgtttgaaa agagctgtat gtattgggat      5100
     taaatatata gattggttga agtctagatc caaaggatcg accttcaata atgcaataac      5160
     atccaaggac atggatatgg cagaaaaata tttaatcaaa caagcccaaa aggaagcatt      5220
     ctctgaagaa atattcaatt taagtaatgg acttccattg gataaggaaa gtcgtattct      5280
     taaatatacg ccagtaatgt ttccagatgg cataataagg tctgatactc gctttaagaa      5340
     tgcaaagtgt agtccttatg aaatgaagta cccatacatt ttgccaaaaa atcatcatgt      5400
     atcaacctta atcataaaag actatcatga gacatttaaa catcaaaaaa cgaatacagt      5460
     gctaacggag ataacccaaa aatatcgcat tatgcattta agatcaatgc taacaaaagt      5520
     tacctccaac tgtcagtatt gtaaaaataa aaaggctgaa ccgcaaatac caaaaatggc      5580
     agatttgccg caatgtcgaa tgcaaccata ttataaacca ttcactttca caggagtgga      5640
     ttattttgga ccctattttg tatcaatagg acgtcaatcc cacaaacgat ggggagtgct      5700
     ctttacatgc atgactacca gggctatata tttagaattg gctaatgatt taagtgcaga      5760
     ctcatttatg atctgtctaa atagcttaca atgtagaaga ggaagagttt cagaattgta      5820
     tagcgataat gggacgaatt ttgtaggagc tcataatgag atgaaagcca ttcaatatcg      5880
     cttagccaat aaaggcattc aatggcattt tattcctcca gcttctcccc actttggggg      5940
     ctcctgggaa agattggtaa aggaagtaaa aagcttatta cctaataaca ccatgccaga      6000
     gcatgttttg cgtggacttt taaccgaaac agaaaagtta gtaaacagtc gccccctgac      6060
     gaatatttat ttagaaaatg atgacgatga acctctaaca cctaatcatt tcctaatggg      6120
     atgttcagca acgtcggaac cctcattaga cgacgtcaca atatcagaag ccactagaca      6180
     acagtggaaa aagatccaac attacgcaaa atcgctctgg gatcgatggg taaaagaata      6240
     tctacctact ctcggaaaac gatcaaaatg gaattcagat attccaccta ttcaactagg      6300
     agatatagtg atgataatgg atgaggatcg taaaggaaag tggaaaaaag gtgtgataaa      6360
     agaagttcac actgcttcag atggtcgagt aagatcggct gttgtgaaga ctattgatgg      6420
     ggaaacaaaa agacctgttt gcaagttagc ggttttagat gtaaaacccc cggtaaatga      6480
     ttctaatata aataaaacat ataaaccgac ccaatttgtc ggtcatgtac attcggagaa      6540
     gaacaaatct tgtggacgca agctgaagaa aataaatcca gaatggggaa aacgaaaatt      6600
     tgttgatatc gacaaagtga aggagttgag ctcgaaaatt aaagcgccta aacgccaaaa      6660
     atttagagct tatacgtgga cacaactgtc cataatactg tattattttc taatgatttt      6720
     tggccaagtg ttctgtttcg acaatcgggg attaattgcc tttgattgcg gaaatcccga      6780
     aataaatatg accagttatt cgttgatgga tgtagcatcg tgtgtaccac caacaaataa      6840
     catcacgact aaagaagttc aaatccaagt acttcaaaag agtatcaaaa gtgaaactaa      6900
     agcgtaccaa tgtaaagtta taattaaaag aagtattaaa cactgcggga tgcattcaca      6960
     tacttctgat tatgaaagag gatatgaata catcgtaaaa gattttactt ccgaagaatg      7020
     ccgtcagtca caagccatgg gaattgtgaa actaacgcat gaccaccagt taagagaaat      7080
     taagcgaaac gcaacaacac gaggagaagc tctcattgtt ggagcagtgt ggggaagcaa      7140
     ttgtaagggt ggaacataca gaacacctat ttacacatgg gttgatgcat tagtttatta      7200
     tgaatatgaa atcactctgc atgattatat tgtaacggtg gattctgaaa atgatgccat      7260
     atatctcaag aatggtctaa catgtaggta ttctcaaggg agatgtttag attcggaaga      7320
     tggctatatt acttgggata ttaattacaa cctgaaatgt gaagaatcag attttgaaat      7380
     tatttacgaa ggaaccgtta ataagacaaa caatgaaatt ccaggagaaa ataataaatc      7440
     tttaaacgct gtttacagta cggtctcgaa tacgcatcta ttttctatca gagcaaaaga      7500
     acaaactaaa gtatgtggac atataggatt ttctactgac catcctcgaa tcataattgt      7560
     tgagatagga actatcaact ctccgtttag aaggaaagca ctatcaggga aaaacttcga      7620
     cttattcaca tatttcaatt caaaaataac tctggtcgaa aactatatag gacagagtat      7680
     gacggagcta tataataccg taatgacgga gatgtgtaag gtggataaaa cattgatgga      7740
     aacgaagtta acgttggcaa gacttaaccc aaccgaattt gttaccagta ttataaaacg      7800
     gtctggattt acagcggtcg tggcaggtga agtcttacat attctggaat gtaaacccgt      7860
     ctatgtaaca ccaagagcag aggatttatg ttatcaagaa atacctgttt cttataacaa      7920
     ccaatcaatg ttcatagcac cagtaactca tatccttcag aaccgaggaa cacaaattga      7980
     ttgtactcct cttctcccgg cgaagtttca gatagggggt agatggtaca cggctgacgg      8040
     tcgaatcaga gaaactattg ctcctctgaa acttacaacc gatatcctaa caacatggtc      8100
     atatactcct cttccgaatt tgatgaacag tggggtgtat gacgcagaaa gtgtagaaaa      8160
     aatgagaaac atgatttatg agcaaggcga taaaagaata gcttctaatg tgcttcataa      8220
     gatcttgatt ggacaaaagc ctgattttca aggattccgt tttgaagcat taatatctga      8280
     ccggatgatt gaaaatgttt tcgaaaaata ctggtccaag ttactctcgt ggtcatcttg      8340
     gctaggaaat ataacgtcta catttattgg tatatatatg attggaagac tggtaaaatt      8400
     cgctattgat acgattatgc atggacgtat attgtacgaa atatatggat taggttggca      8460
     attgctagca tcattttggg actcattcac aaattttctg tctcatagaa atgtaatgaa      8520
     aagaacacaa aataatacag aagttgaaga aattgcgatc gctgacgata caaccggctc      8580
     gatctaccca aacatttcgc ataagttcaa cgatgagtaa atcatgggga agatttacgg      8640
     gccccggga                                                              8649
//
ID   BEL-879_AA-LTR repbase;    DNA;    INV; 947 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 25.10, Created)
DT   21-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-879_AA-I;
KW   BEL-879_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-947
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-947
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3009-3009 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 947 BP; 293 A; 160 C; 195 G; 298 T; 1 other;
     tgtcgcttcg ctgattgaaa taataatctc gcggtttaaa aattatttgt aataatcata        60
     gttatcatta gggttttcat taagcattwc aaaacaagcc tcagtcgcca ccaatgttta       120
     atttttgtct cgccaatgcg atagactaag atttatctct gttcaaataa atatgctaga       180
     tgtaagaacg gaaacatgtc ataaaatttc tgctcaatgt ttagtctggt taaccaaagc       240
     gcatgaagcg ataagcgctg cgaagtaagg caattaatga atttagaccc ttagcgacag       300
     gatgttattc taagatgcag aaacaggcct tgcaagaatc tggaaatgtt taccgataag       360
     agatttgtga cctgtcttag atttgtgtgc gtcctttctc tctttcttta acgagacggg       420
     gaggtgtcag gatgaaggat gcaaaggaaa atagaatagt tatgataatt aggcgtggtt       480
     aagataagga aacaatctag catagatttt ctagaaaaaa ggacatgtgg gagaagaaaa       540
     tgttctgact cattctccct tttgatagga attaggtttt ttgccctatt ggaataatta       600
     tgtatcgaat agaagtctag tttcattggt attgtaacga actcgaattg tattagtttc       660
     agatagtatt taaggcaagt tgttttcaat acaaggttca gttcatgatc actactgaaa       720
     aaggtacgag ttccaaggaa cttttttact acctttgaaa tatccgaact ccaaaaacaa       780
     gtggtcgact ctctccggta ggaaattcct actttttacg agagatacaa atccgctccc       840
     tgtttgggag aatagtcaaa gagtttttac ggatctggga aactagatct cgttctgcga       900
     cttagaggaa ttccttcgct tcctctggat ttggaccgtc ccccaca                     947
//
ID   BEL-87_AA-I repbase;    DNA;    INV; 6264 BP.
XX
AC   supercont1.41;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-87_AA_;
KW   BEL-87_AA-LTR; BEL-87_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6264
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.41; Positions 2613185 2619448.
XX
CC   Positions [5299-5856] - Integrase core
CC   'TCTAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..6264
FT                 /product="BEL-87_AA-I_1p"
FT                 /translation="MDGDHDTTAFNCKTCNLPDSVDAQMVACDKCHLWEHF
FT                 TCAGVDETVKDRQYVCKDCIAKVSAEKSKRTKQLKVDNRSTKTGGRSTSRK
FT                 GSKNPSIPASQSSSARAAALEAQMKVIEEEKAMKEQELKEQEELKKWELEE
FT                 EQRQIEEKKQLMEEERKLRQRKLEEQRALLAKQQMIRRESMEKKNELIKLM
FT                 SECGSVNSTSSMPDSRDKVKSWLADQKSNGSSMGKMVKERESNNGLHPTGF
FT                 HDPLPYQLAPPLHRAAQLATQSVLEKKRGPIKLQQARSEIVVQPFHQYVSS
FT                 SQPRPQQSMKENFTMAQQLHQSQSEDGLPLQRIQTLVHQHQPLPNRQLHQT
FT                 TGRPQLCQPLPQQQYDNCFRMDATQSQRVFEQPIQHHAEIPVPNRQAYPPE
FT                 FHGVANPQVDWQTNPRGQMFVPPQVPIQQTTMVAEPTVLQSQQIAARQVVG
FT                 KQLPRFDGNPMDWPMFISSYEQSTAACGYTNAENLIRLQQCLSVHAKESVC
FT                 SKLLLPESVPHAIETLRIRYGRPELLLKSLLEKVRRTPGPRQDKLETVIEF
FT                 GLAVGNFVDHLRAAQLQQHLSNPMMMQELVDKLPGSMKMEWASFKSQHPFA
FT                 DLETFGLFMEKQLTAASAVSFELPLHDKPYKSEKHKMRENAGIHAHSQGDR
FT                 QGDKQPNLTEQHRKPTKVCGVCTREGHRAADCPQFKELNADERWKTVQKKG
FT                 LCRTCLNSHGKWPCKSWQGCAVEGCRLKHHTLLHSPSPTHHVNCSSSHSSS
FT                 PKALFRILPVILYNEGRSVSVFAFIDEVSEITLLEDNVAKQLGVKGPVKAL
FT                 TLQWTGNVKRNESKSQEVSLGISGKSGSGKFDLRNARTVSCLFLPSQRLDY
FT                 GELAQRFPHLRGLPMDSYETIQPKLLIGLDNLRLGVPLKLREGSSYDPIAA
FT                 KCRLGWTVYGCTGERSSNAAIVNFHTTESSTADHLLNAQLRDFFTIENDGI
FT                 TNRSENLVSEEDKRAKMILEKTTRRTGDSFETGLLWRTDNPEFPDSYPMAA
FT                 RRLVGLEKKFAKEPWLGDQVRQQIHDYEKKGYAHKATQAELDSVNRSRLWF
FT                 LPLGVVQHPRKQKVRLIWDAKATVGSVSLNSKLLKGPDLLTPLVAVLSSFR
FT                 QFPVAVCGDIREMFHQIKIREQDRLSQCFLWRDRPSDEIQIFVMDVATFGS
FT                 TCSPVSAQFVKNLNAEELSIQYPRAATAITRHHYVDDYLDSFKTVQEAVEV
FT                 VKEVKLVHSRGGFELRNFFSNSGEVLQGIGEVSGDMTKDLALQRGENMESV
FT                 LGMKWIPSVDCFTYTVNINAGLQLVLEESHIPTKREILKVVMSLFDPLGLI
FT                 SFFLIHGKVLIQGVWASGTGWDDRINENLFKQWRQWVNCFDQLDKLRIPRC
FT                 YFSTPYVSTENRLEAHVFVDASETAYCCVVYFRLIKADCVEVALIGSKSKV
FT                 APLKTLSIPRLELKAAVLGAQYLQFVLNNHEFPVHQRYLWTDSTTVLAWIL
FT                 SDHRRFQKFVAVRVGEILTLSDPQEWRWVPTKINVADRATKWGKGPELQAE
FT                 SSWFCGPAFLHQGEEHWPERRRNISTQEELRPVHTHWSAVSLIDATRFSRY
FT                 EKMLRTAAYVLRFIDKLLRKRSDESLPLGLLNKNDLKRAEETLWKIAQLES
FT                 FPEEYTILSSTQGSPESRHACVSKSSPIFKAWPYLDDRGILRMRSRIGAAV
FT                 FAPFEAKYPAVLPRQHPITKLIVDWYHRRFRHANRETVVNEVRQRFEIAKL
FT                 RSLVEKVSRECALCRVKKAYPKPPPMAPLPPARLQAFVRPFTYVGVDYFGP
FT                 VFVRVGRSQVKRWVAVFTCLTIRAVHIELVYSLSTESCIMAVRRFVARRGP
FT                 PAEIYSDNGTCFQGASRDLEGQRKINEALATTFTSAQTKWLFIPPAAPHMG
FT                 GAWERLVRSVKVAIGAVADAPRKPDDETLETILVEAEFTINSRPLTYIPLE
FT                 SADQESLTPNHFLLGNSSGLKILPSKPIPQRGALRSNWKLAQSICDDFWRR
FT                 WVKEYAPVIARRTKWFAETRDLKVGDLVLMVGGTARNQWVRGRIEKAISGR
FT                 DGRVRQALVRTTSGVFRRPTVKLAVLDIVESSEPERVQGALGHHAGSRGGV
FT                 "
XX
SQ   Sequence 6264 BP; 1741 A; 1456 C; 1623 G; 1444 T; 0 other;
     ttctttaaga atttttgtac gtggatagac gcaatggatg gagatcacga tacgactgcg        60
     ttcaactgca aaacctgcaa tctaccggac tcggttgatg cgcagatggt cgcctgtgac       120
     aagtgccact tgtgggaaca cttcacgtgc gcgggcgtag acgagacagt gaaggatagg       180
     cagtatgtat gcaaagattg catagccaag gtgagtgccg agaaatctaa acgtacgaag       240
     cagcttaagg tggacaatcg gtccaccaaa accggtggaa gatcgacttc gagaaagggc       300
     tcgaagaatc cgtctattcc ggcgagtcaa tcgtcaagtg ctcgtgctgc ggctctggaa       360
     gcccaaatga aggtcatcga ggaagaaaag gcgatgaagg agcaggagct gaaagaacaa       420
     gaagagctaa aaaaatggga actcgaggaa gaacagcggc agattgaaga gaagaagcag       480
     ctcatggaag aagagcgaaa gctccgccag cgaaagcttg aagaacaacg ggcgttgttg       540
     gcgaaacagc aaatgattcg cagagaatct atggagaaaa aaaacgagct gatcaaattg       600
     atgtcggaat gtggaagtgt caacagtaca agctcgatgc cagattcgcg ggacaaggta       660
     aaaagttggc tggcggatca aaagtccaac ggaagttcga tgggaaagat ggtgaaggag       720
     cgagaaagca ataatggcct tcatcctact ggtttccacg acccgttacc ataccagctg       780
     gcacctccgc tacatagggc tgctcaactc gccacgcaat cggtccttga gaagaagaga       840
     ggacctatca aacttcaaca agctcgttct gaaattgttg tgcagccatt tcaccagtac       900
     gtttcgagtt ctcagcctcg tccccagcag agcatgaagg agaacttcac tatggcgcag       960
     caactgcatc aatcccaatc ggaggatggg ttaccgttac agcgtatcca aacgttagtt      1020
     catcaacatc aaccgctgcc aaatcggcaa ttgcatcaaa caaccggtcg gccgcagtta      1080
     tgccagcccc ttccacaaca acagtacgat aattgttttc ggatggatgc aactcaatct      1140
     caaagagtgt tcgagcagcc aattcagcac cacgctgaga tccctgtgcc aaatcgtcaa      1200
     gcttatccac cagaatttca tggtgtcgcc aatcctcaag tagattggca gaccaaccct      1260
     cgagggcaga tgtttgtacc accgcaagtt ccgattcagc agacaacaat ggttgcggag      1320
     ccgaccgttc ttcaatcgca gcagattgca gcccggcagg tagttgggaa acagttgccc      1380
     aggtttgacg gaaacccgat ggactggcca atgttcatta gtagctatga acagtctacg      1440
     gctgcttgtg gttacacgaa tgcagaaaat ttgattcgtc tacagcagtg tctctcggta      1500
     cacgcaaaag agtcagtttg cagcaaactg ctactgccag agagtgtacc tcacgccatc      1560
     gagacactta gaattcgcta cggtcgtccg gaactgctac tcaaatccct gttggaaaag      1620
     gttcgccgca caccgggtcc tagacaagac aaactagaaa cggtgatcga gtttgggttg      1680
     gcagtaggga acttcgtcga tcatctgcgg gcggcgcaac tgcaacaaca tctctcaaat      1740
     ccgatgatga tgcaggaact ggttgataaa cttccaggct ctatgaaaat ggagtgggct      1800
     tccttcaaga gtcaacatcc gtttgcggac ctggaaactt ttgggctttt catggagaag      1860
     caactaacag cagcgagcgc agtaagcttc gagcttccac tgcatgataa gccgtataaa      1920
     agcgagaaac ataaaatgcg ggagaatgca ggtatacatg cacattccca aggtgaccgc      1980
     caaggagata aacagccgaa tctgacagag caacatcgga aaccgacaaa agtgtgtggc      2040
     gtctgtactc gcgagggtca cagagctgcc gattgccctc agttcaagga gttgaacgcc      2100
     gacgagcgtt ggaagactgt ccaaaagaag ggtttgtgca ggacatgctt gaacagccat      2160
     ggcaaatggc cgtgcaaatc atggcaaggt tgcgcagtgg aaggatgccg cctaaagcat      2220
     cacactcttc tgcattctcc ttcaccgaca catcatgtca actgctcatc cagtcactcg      2280
     tcttctccga aagctctctt ccgtatacta cccgtcattt tatacaacga aggaagaagc      2340
     gtttccgtgt tcgcctttat cgacgaagtg tcggaaataa cactactcga agacaacgtc      2400
     gcaaagcagc taggagtgaa aggtcccgta aaggcgttaa ctcttcagtg gacgggcaac      2460
     gtgaagcgga atgaatccaa gtcccaggaa gttagtttgg gaatatcagg aaaaagtggt      2520
     tcagggaagt tcgatcttcg aaatgccagg accgtaagct gtttgttcct gcccagccag      2580
     cgacttgact acggagaatt ggcacagcgt ttccctcatc tcagagggct tccaatggat      2640
     agctatgaaa ccatccaacc aaaacttcta ataggattgg ataatcttcg cttaggagta      2700
     cctttgaaac tccgtgaagg tagttcgtat gacccaatag cagcgaagtg tcgactgggt      2760
     tggaccgtat atggatgtac cggtgaaagg agcagtaatg cagcgatcgt aaactttcac      2820
     actaccgaat cctccactgc agatcatcta ctgaatgcgc agttgcgtga ttttttcacg      2880
     atagagaacg acggaatcac caatcgcagc gaaaatctag tttctgagga ggacaaacga      2940
     gcgaagatga tattagaaaa gacaacacga cgaactggcg atagttttga gacaggcctc      3000
     ctatggcgga cggacaatcc agagtttcct gatagttacc caatggctgc tagacgactc      3060
     gtaggtttgg agaagaagtt cgcgaaggaa ccatggctcg gagatcaagt gcgacagcaa      3120
     attcacgact acgagaaaaa aggctacgca cataaagcaa ctcaagcaga actggactcc      3180
     gttaaccgca gccgtctatg gtttctccct ttgggagttg tacaacatcc caggaagcaa      3240
     aaggtacgac taatttggga tgctaaagca acagtgggtt ccgtctcgtt gaattccaag      3300
     ctactgaagg ggcctgactt actgactccg ttggtcgccg tgcttagctc cttccgtcaa      3360
     tttccggtgg cggtgtgtgg agacatccga gagatgttcc accaaatcaa aatcagggaa      3420
     caagaccgtc tctcccagtg ttttctgtgg cgggataggc catccgatga aatccaaata      3480
     tttgtgatgg acgttgcgac atttggatcc acatgttcgc ccgtatcagc tcagttcgtc      3540
     aaaaatctca atgccgaaga gctgtccatt cagtacccac gggccgcgac tgcgattacg      3600
     aggcatcact atgtggacga ttacctggac agcttcaaga cagtccagga agctgtagag      3660
     gtcgtgaaag aggtgaaact ggtccactct agaggcggat ttgaacttag gaacttcttc      3720
     tctaattccg gagaagtact tcaaggtatc ggcgaagtat cgggtgatat gacgaaagat      3780
     ctggcgttgc agagaggtga aaatatggaa tcagtattag ggatgaagtg gataccaagc      3840
     gtggattgtt tcacttacac ggtgaacata aatgcaggtc tgcaacttgt cctcgaggaa      3900
     agccatattc ctacgaagcg ggagatactt aaggtggtaa tgagcctctt tgacccgctg      3960
     ggccttattt cattcttcct catacacgga aaggttctca tccaaggagt ttgggcttcc      4020
     ggcacaggct gggacgaccg gatcaatgaa aatctcttta aacaatggcg acagtgggta      4080
     aactgttttg atcagctgga taaactaagg atacctcgat gttacttctc tacgccgtat      4140
     gtcagtaccg aaaatcgatt ggaagcccat gtcttcgttg atgccagcga aactgcatac      4200
     tgctgcgttg tatacttccg tctgataaag gcagattgtg ttgaggtagc cctaatcggc      4260
     tctaaaagca aagtagctcc tctgaaaact ctttcgattc cacggttgga actaaaagct      4320
     gcagttctag gtgctcaata tcttcaattc gttctgaaca atcatgaatt tccagtgcat      4380
     cagagatatt tgtggaccga ttcgactacg gtactagcgt ggatcttgtc agaccatcga      4440
     cgattccaga agtttgttgc tgtacgagtg ggggaaattt tgaccttgag cgaccctcaa      4500
     gaatggagat gggtcccgac aaaaatcaat gttgcagaca gagccacaaa gtggggcaaa      4560
     ggccccgaat tacaagccga atcttcatgg ttctgtggcc cagcgttcct gcatcaaggt      4620
     gaagagcatt ggcctgaacg tcggcggaac atttctactc aggaggagct tcgacccgtt      4680
     catacgcatt ggtcagcagt ttctttgatc gatgcgacaa gattcagtag atacgagaag      4740
     atgctacgaa cagcggctta cgtcctacgt ttcattgaca aactacttcg caagcgttct      4800
     gatgaaagtc taccgttagg tttactgaat aaaaacgact taaagcgggc tgaggaaacc      4860
     ttgtggaaaa ttgcccagtt ggaaagcttt ccagaggagt acacgattct ttcttctact      4920
     caaggatcac cggaatcgcg acatgcttgc gtttccaagt ccagtccaat tttcaaagca      4980
     tggccatatc tcgacgaccg agggatactt cggatgcgta gccgaattgg cgctgcagta      5040
     ttcgcaccat ttgaagccaa atatcccgct gtattacccc gccaacatcc aattaccaag      5100
     ctaatcgtcg attggtatca tcgtcgtttt cggcatgcta acagggaaac cgttgtgaac      5160
     gaggtaaggc agaggtttga aattgcaaag ctccgaagtc tcgttgagaa agtgtccaga      5220
     gaatgtgcct tgtgtcgtgt gaagaaagcg tacccaaagc caccgcctat ggctccactc      5280
     ccaccggctc gtcttcaagc gtttgttcga ccatttacat atgttggagt cgattacttt      5340
     ggtccagttt ttgtcagggt tggaaggagc caagtgaaac gctgggttgc agtattcacc      5400
     tgtctcacaa ttcgtgcggt gcatatcgag ctggtgtata gtctatccac cgaatcgtgc      5460
     attatggcgg ttcgcagatt tgttgctcgg cgtggtcctc cagctgaaat ctacagtgac      5520
     aatgggacgt gtttccaggg agcaagtaga gacttagagg gacagcgcaa aattaacgaa      5580
     gccttagcta cgacctttac gagtgcccag acaaagtggc tgttcattcc cccagccgcg      5640
     ccccacatgg gtggtgcctg ggaacgactt gtacgatcgg taaaggttgc cattggagca      5700
     gttgcagatg cccctcgaaa accggacgat gaaaccctgg aaactatctt ggtcgaggca      5760
     gagttcacca taaattcaag acctctcacc tatattcctc ttgagtcggc cgatcaagaa      5820
     tcactcacac ccaaccactt tttgttgggt aattcgagcg gtttgaagat cctgccatcc      5880
     aagccaatac cacagcgagg ggctctacga agtaattgga agctggcgca atcgatttgc      5940
     gacgacttct ggcgcagatg ggtgaaggag tatgccccag ttatcgctcg tcgcaccaaa      6000
     tggtttgcgg aaacacgaga cctgaaagtt ggggatctgg tattgatggt aggtggaact      6060
     gcacgtaacc agtgggtccg tggacgcatt gaaaaggcta tttccggaag agatggacga      6120
     gttcggcaag cgctggtgcg cactacatcc ggagtcttca ggagacctac ggttaagtta      6180
     gcggttctgg acatcgtgga gagcagtgaa cctgaacgtg ttcaaggagc cctaggacat      6240
     catgcaggtt ctcggggtgg ggta                                             6264
//
ID   BEL-87_AA-LTR repbase;    DNA;    INV; 703 BP.
XX
AC   supercont1.41;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-87_AA_;
KW   BEL-87_AA-I; BEL-87_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-703
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.41; Positions 2612482 2613184.
XX
SQ   Sequence 703 BP; 273 A; 122 C; 115 G; 193 T; 0 other;
     tgtcacgatg agaccccgtt ctacagtcga tgtagaaaac gatcatcgcg aagaccgcac        60
     aacgacacta caaacgatca caacgatatc caaaaaatcg ggtgtaaaca aaaaggaaaa       120
     ggattgaatt gctctcgcat gtagaaagta caattgaaat cgtggcatac aattagttac       180
     taaatattct aaaaaactaa gtgaatttat atttgaactt aaaagttgga tttctctctg       240
     ggcgtaaaag ttgttgacta taaataatta gttaattgcc ttataaatta taaattatac       300
     gtgcacaggt aacatatcat gcggttgaaa atgaattagt ttaattaatt ggatcttaaa       360
     ctaggtgtac gtgtagttaa acctaaagcc caccatttgt catctaataa cttcgaagac       420
     gaataagtct agttgaaact aatcgtgagt acaatcgttt agcaattaaa accataatat       480
     aaccttaaaa ctactctata catacagcac gatctttgaa gtgacggtaa aacaagatcg       540
     gaaacagtga ttcgacatta caaaggttca ccaaaaaatg taagaccagg catatataga       600
     gaacacgatc ataatactaa ataaatttca ttttagctta aagcttacca aacaacaata       660
     aaccctggtt tgcttctgag actttggaga aatcatccgc aca                         703
//
ID   BEL-87_CQ-I repbase;    DNA;    INV; 5414 BP.
XX
AC   AAWU01006055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-87_CQ_;
KW   BEL-87_CQ-LTR; BEL-87_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5414
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 307-307 (2011).
XX
DR   GenBank; AAWU01006055; Positions    3138    8551.
XX
CC   Positions [4428-4949] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..1892
FT                 /product="BEL-87_CQ-I_3p"
FT                 /translation="MLSTPVKDPDSSLLEVFSTPIGELQQSRRKMAEEFDI
FT                 LVKQRGAVKGKITRIKNVLGQHTQNQTIPDEFLLHTQLKTIDATYEEFNHF
FT                 QNKIYAAKPAEADDQEKKYVEFEADYNFVRAKVCQLLRGVKQEPDPQPPAA
FT                 AQPVRVQATSSLHTPLPSFDGKPENWYKFKAIFTDVMSKHPGESEATKLYH
FT                 LDKCLVGEAVGSIDQQTINDSDFAAAWAELTEQYENKRRIVDIHVGGLLNL
FT                 KPMTSESGKQLRELVDGCKRHVSALNFHEFPMAGLADILVVNILASKLDIE
FT                 TRKVWETSIEHGEIPNYADTVKFLTTRSQVLERIELADNKQKKPVAAKTTK
FT                 IPALKASSLAASVEYRCAFCGQEHQNHECGEYLKLDPKERYEKAKQTGVCS
FT                 NCLKKGHITRRCSSTKTCKACKKRHHSTLHLNETGVAVEQPLARSTQNSTT
FT                 ATPSAGPAGTTAVTASCVIYQQRALLCTAIVNILDDGGKALPCRVLLDCGS
FT                 QVNLCTEKVASLLRLKRRSVNVDVKGVDGSTTRVTALVHINVQSRDNVYTS
FT                 NLECLVINRITGTIPAKNIDISTWPVPAGLQLADPEFYRPQHADWRRPILR
FT                 SPENW"
FT   CDS           1849..3369
FT                 /product="BEL-87_CQ-I_1p"
FT                 /translation="MLIGVGQFFGLLKTGKVKLAESLPFLQETVFGWVVGG
FT                 LADSTSWKYEVTRCNVAVQDAELNDLVERFWESEAVPTASRMSSEETACEQ
FT                 CYEQTHSRDPSGRYVVMLPFRGNVSQLGDSKQHALQRFSYLEKKLAKNADL
FT                 KAAYCAFMEEYVRLGHCREIDPSKEEDGGYYLPHHAILKPSSSTTKLRTVF
FT                 DASAQTSSGLSLNDTLMVGPTIQDPLFDIALRFRTYPYVFTADISKMYRMV
FT                 RVHPDHTKFQRVFWRTDPSESLKTLELLTVTYGTASAPYLATRTLKQLAQD
FT                 EGQAYPRAAKILENDFYIDDALAGADTLKELLLARDELEELLEKKGFELHK
FT                 WCSNSAEFLDTIPDERREKQVSFELSGVNEMIKTLGILWNPTSDKLLFRVA
FT                 LTDLTQPVSKRRIRSEVARSFDPLGLQAPVCVTAKLILRQCWRKKVSWDEQ
FT                 LCKVLTTKATVQGAMEQISWRTASADGGTDRAPSHRATQGGPGAARIFGRI
FT                 PGSLRHVRLRA"
FT   CDS           3471..4949
FT                 /product="BEL-87_CQ-I_4p"
FT                 /translation="MSRLVSRVMKALKVKFTRKVLYSDSTIVLGWLAKSPS
FT                 ELETYVANRVAEIHELTPRADYEYKYVRSSANPADLVSRGLFPEALIGNRF
FT                 WFHGGFLEENDYQEDEMAIVVELPEVRVAAVVITDEQEEDYNRIFTRFSSF
FT                 RKLQRVLAYVIRFCNKTRKRSTYGDNDKYPTIPELRSSLRSIVYMVQQQRM
FT                 QTDIQEVLKKQGKPNERYTGRLRSLNPWVDTYGILRVNGRIKYANVSYEQR
FT                 CPAILPAEHPVTAILVQAVHEENLHVGSSGTLSVLRQRYWILNGRNAIRAR
FT                 LRKCVRCFKVNPSETKLFMGDLPSYRVTQAYPFERVGVDFAGPIYVRKGHP
FT                 RKPVYCKAYVALFVCMVTKCIHIELVSNLTTDAFIAALHRFVARRGLPSDV
FT                 YSDNATNFAGASSELHELYALLTQQLTKDALQEFCLPKEIRWHFIPPRSPH
FT                 IGGLWEAGVKSAKHLIKRNAGETKLTEEEWSTLLTQIEGIFNSRPLVP"
XX
SQ   Sequence 5414 BP; 1355 A; 1476 C; 1551 G; 1032 T; 0 other;
     tttttggtcc tacttcgccg gatattcgta gtagtttcgg tcgaaaggaa cggacaagga        60
     cccggtcgat tggatgggcg tagatgctct caactccggt gaaagatccg gacagttcgt       120
     tattggaagt ttttagtacg ccgatcggag agctgcaaca atcgagaaga aagatggcgg       180
     aagagttcga cattttggtg aaacaacgtg gtgcagtgaa aggaaaaatc acccggatta       240
     agaacgtgct gggccagcac acgcaaaacc aaacgattcc ggatgagttc ctcctgcaca       300
     cccagctgaa gacgattgac gcaacctacg aggaattcaa ccacttccag aataagatct       360
     acgcggccaa gccagcggaa gcggatgacc aggagaagaa gtatgtcgaa tttgaagcgg       420
     attacaattt cgttcgggcc aaggtctgcc agttactgcg tggggtcaaa caagaaccgg       480
     acccccagcc tccggcagca gcccaacccg tgcgagtgca agcgacatct tctctccaca       540
     cgccgctgcc atctttcgac gggaagccag aaaactggta caaattcaag gccattttca       600
     cggatgtcat gagcaagcac cccggcgagt cagaagcaac caagctctat catttggaca       660
     agtgcctggt cggagaagcc gttgggtcaa tcgaccagca aacgatcaac gacagcgact       720
     ttgctgctgc ttgggcggaa ctgaccgagc aatacgagaa taagaggagg atcgttgaca       780
     ttcacgtcgg cggtttactt aacctcaaac cgatgacatc tgaaagtggt aaacaactcc       840
     gtgagctggt ggacgggtgc aaacggcacg taagtgcttt gaacttccac gagttcccga       900
     tggctggcct tgcggacatt ctggtggtca acattttggc gtcgaagctt gacatcgaaa       960
     cgaggaaagt gtgggagaca agcatcgagc acggcgagat tccgaactac gccgacacgg      1020
     tgaagtttct cacaacccgg agtcaagttt tggaacgcat cgagcttgct gacaacaagc      1080
     agaagaagcc tgtcgcagca aagacaacga agattcccgc actgaaggca tcgtccctgg      1140
     cggcgtcggt cgagtaccgg tgcgcatttt gcggacagga gcaccagaac cacgagtgcg      1200
     gcgaatatct caagctggat ccgaaggagc gctacgagaa ggcgaagcaa actggagttt      1260
     gttccaattg cttaaagaag gggcacatta cgcgtcgctg ctcctcgacg aagacgtgca      1320
     aggcctgcaa gaagcggcac cattctacac tacatctgaa cgaaacgggt gtcgctgtcg      1380
     agcagccact tgcacgatcc acgcagaact ccacgacggc tacgccgagc gcaggaccag      1440
     ccggaacgac ggcggtcaca gcctcctgtg tgatctacca gcaacgggcg cttctctgca      1500
     cggcgattgt gaacatcctc gacgacggtg gcaaggccct gccctgccgc gtactgctag      1560
     attgcggttc acaagtgaat ctgtgtacgg agaaggtcgc gtcgctactg cgactgaagc      1620
     gacgaagtgt gaacgtcgac gtcaaaggtg tggatggttc aacgaccagg gttacggcct      1680
     tggtgcacat caacgtgcag tcccgagaca acgtctacac aagcaacttg gagtgtctgg      1740
     tgatcaaccg tatcactgga accatacctg cgaagaacat cgacatctct acctggccgg      1800
     tacccgccgg cctgcagcta gcggatccgg agttctaccg ccctcaacat gctgattggc      1860
     gtcggccaat tcttcggtct cctgaaaact ggtaaggtca agctggcaga gagcctgccg      1920
     tttttgcagg agacagtgtt cggatgggta gtcggtggcc tggccgactc cacgagctgg      1980
     aagtacgaag tgacccgctg caacgtggcg gtccaagacg ctgagctgaa cgacctcgtc      2040
     gaacggttct gggaatccga ggcggtgccg accgcttcaa ggatgtcgtc ggaggagacg      2100
     gcatgcgagc agtgctacga gcagacccac agccgtgacc cgagcggtcg ctacgtcgtg      2160
     atgcttccct tccgtggcaa cgtgagtcaa ctcggcgact cgaagcagca cgcactacaa      2220
     cgcttctcgt acctcgagaa gaaactagcc aagaacgcgg acctgaaggc ggcctactgc      2280
     gctttcatgg aagagtacgt gcgcctcggc cactgccgcg aaatcgaccc gtccaaggag      2340
     gaagatggtg ggtactacct gccccaccat gccatactga agccaagttc gtccaccacc      2400
     aagttgcgca cagtttttga cgcctcggca caaacgagtt ccggactctc gctcaacgac      2460
     accctgatgg tcggtccaac cattcaagat ccgttattcg atatcgccct tcgattccgg      2520
     acgtacccgt acgtgtttac ggcggacatc tcgaagatgt acagaatggt tcgggtgcac      2580
     cccgaccaca cgaagtttca acgtgtgttt tggagaacgg acccttccga gtcactcaaa      2640
     acgctcgaac tgttgaccgt cacttacggg acggcatcag cgccatactt ggcgacccgc      2700
     acgttgaaac agctcgccca agacgaagga caagcctacc ctcgcgctgc caagattttg      2760
     gagaacgatt tctatatcga tgacgcactt gcgggtgctg atacactgaa ggagttgctg      2820
     ctggcgcgcg acgaactgga ggagctgctg gagaagaaag gcttcgagct ccacaagtgg      2880
     tgctccaatt ccgccgagtt tcttgacacc attccagacg aacgacgaga gaagcaagtg      2940
     tcattcgaat tgagtggcgt gaacgaaatg atcaagactc tcggcattct gtggaacccc      3000
     accagtgaca aactgctgtt ccgcgtcgct ctcactgact tgactcaacc ggtttccaaa      3060
     cgtcgcatcc ggtcggaagt tgccagatct tttgacccgc taggtctgca agcaccggtt      3120
     tgtgtcaccg ctaaattgat cctgcgtcag tgttggcgaa agaaagtgtc ttgggacgag      3180
     caactgtgca aggtgcttac aacaaaagca actgtgcaag gtgctatgga acaaatttcg      3240
     tggaggactg cgagcgctga tggaggtaca gatcgagcgc cgagtcatcg tgccacacag      3300
     ggtggccctg gagctgcacg cattttcgga cgcatccctg gaagcttacg gcacgtgcgt      3360
     ctacgtgcgt aacattctgg cggacaacac agcagtagcc tacttgcagc aagtcgcact      3420
     tggcgcccaa agagacgatc ccgaaactcg aactgtgcgg cttccggctg atgtcaaggt      3480
     tggtgtccag ggtaatgaaa gcactcaagg taaaattcac tcggaaggtg ctgtacagcg      3540
     actcgacgat tgtactggga tggttggcca agtccccaag cgagctcgaa acgtacgtgg      3600
     caaaccgagt tgccgaaatc cacgagctta ccccgagggc cgactacgag tacaagtacg      3660
     tgcgaagcag cgccaacccc gcagacctcg tctcacgagg actctttccg gaagcgctga      3720
     ttgggaatcg cttctggttc catggcgggt tcctcgaaga aaacgactac caagaagacg      3780
     agatggccat cgtagtcgaa ctacccgaag tacgagttgc agccgttgtg ataaccgacg      3840
     aacaagaaga agactacaac aggatcttca cacggttcag ctcgttccgc aaactacaac      3900
     gagtgctagc ctacgtgatt cgcttttgca acaagacccg gaagcgatcc acgtacggag      3960
     acaacgacaa gtacccaacc atacccgaac tacgatcgtc gctgcgctcg attgtgtaca      4020
     tggtccagca gcaacgaatg cagacagaca tccaagaagt gctgaagaag caaggcaagc      4080
     cgaacgagag gtacactggc cgactacgaa gcttgaaccc gtgggtcgac acctacggca      4140
     ttctacgagt caacggacgg atcaagtacg ccaacgtgtc gtacgagcag cggtgcccgg      4200
     ccatactgcc tgccgagcat ccagtaacgg cgatcctggt tcaagctgtc cacgaggaga      4260
     atctgcacgt cggatcgagc ggaactctat cggtcctgcg gcaacggtac tggatcctga      4320
     acggacgaaa cgcgatccgc gcaaggttgc ggaagtgcgt acggtgcttc aaggtgaacc      4380
     catcggagac caaactgttc atgggagact tgcccagcta cagagtgacc caggcctacc      4440
     catttgaacg agtgggcgtt gacttcgctg gaccaatcta cgtacgcaag gggcacccgc      4500
     gcaaaccagt gtactgcaag gcgtacgtgg cattgtttgt gtgcatggtg acgaagtgca      4560
     tccacatcga gctggtgtca aacttaacga cggatgcttt cattgccgcc ttgcaccgat      4620
     ttgtcgctcg tcgcggcctt ccctccgacg tttacagcga caacgccaca aactttgctg      4680
     gagccagctc ggagctccac gaactgtacg cgctgctgac gcagcagctg acgaaggatg      4740
     cgcttcaaga gttttgtctg cccaaggaaa ttcgctggca ttttatccca ccacggtcgc      4800
     cgcacatagg aggtttgtgg gaagccggcg tgaagtcggc gaagcacctg atcaagcgga      4860
     acgcaggtga aacgaagctg acagaagagg aatggtccac actactaacg cagattgaag      4920
     gcatatttaa ctcgcggccg ttggtgccgt agacggcgga cccgggtgac ctcaacgtga      4980
     tcacgcccgg tcatttgctg attggccgcc cattcaacgc gatcccggag ccggcgtacg      5040
     atcaactcaa gcctggaacg ctgacacggt ggcagcacct gcagaagatg cgagctgact      5100
     tctggaaacg ctggtcggcg ggctacctgt ccgagctgca gcagcggcag aagtggaaca      5160
     agcagcacac tgtcgtcaag gaaggagatt tggtgctgct caaggaggag aacgttccgg      5220
     cgctgcagtg gaggctcggc cgagttgtga aggtccaccc cgggcaagac ggagtcaccc      5280
     gcgtggtgac ggtaaagaca gcaggaggag tttacaagcg gtcgacggca aaggttgcgg      5340
     tgctcccact cgacgacgaa gcagaggaga agacagccgg ttgaggttcc cggatgtcca      5400
     ctggcggggg agga                                                        5414
//
ID   BEL-87_CQ-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   AAWU01006055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-87_CQ_;
KW   BEL-87_CQ-I; BEL-87_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 308-308 (2011).
XX
DR   GenBank; AAWU01006055; Positions    2950    3137.
XX
SQ   Sequence 188 BP; 61 A; 48 C; 36 G; 43 T; 0 other;
     tgttgggacg catttggcaa ccctgcagcg agtgacagct agaagacaga aattttgatt        60
     cagtgcattt ccgcttttac aacacactca cactaacaca cagcacgaac aaccagcaca       120
     gtttagagac ggcaagagaa taaaccagtc gcaaattaca gtccacgcgt ttttaattcg       180
     tctctaca                                                                188
//
ID   BEL-880_AA-I repbase;    DNA;    INV; 6318 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 25.10, Created)
DT   21-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-880_;
KW   BEL-880_AA-I; BEL-880_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6318
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6318
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (21-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..3912
FT                 /product="BEL-880_AA-I_1p"
FT                 /translation="MDSSDAQCIICHRPNSVEANMVQCDGCSRWYHFSCAG
FT                 VGDSIADADKSYRCALCKRRDSHTVSSSKSITSTTASQREARLQLEMQRLA
FT                 EEKALQAKLMAERAKQDQEMQEKALLLEKDRREKAIADLMKLEQEFLDRKY
FT                 KLLHAQLDADDRSSVVSNGSDEAVDKVRGWINNHPVILGTKTGESVPTGLT
FT                 TQTGGLVETQPTSAAAGHAHDKIISNNVAIAETRSKSPDIVMSPIPNREEG
FT                 HLGRRNMSSTPRAVPAPPLMVNWAVSSEYRSAPSAAASGAAVQTQMPISVS
FT                 QRENPGPLGIESSGIVRQVGSYYPYVTTSSLVSTTNSAAWRTVEPIHGSSY
FT                 MPSSNAIPLTRPQLGFADISMYVPSSSFGQSYSGNVQPPGFPNHSSLSNAG
FT                 QFSTTNPPLQTTSKVWENLNPVSCPPVVSVSSYQTPISSVSIPQLQTVSSQ
FT                 TLYGPNAQQLAARHVVPKELPQFSGNPAEWPLIWSSFETSTQMCGYNDAEN
FT                 LMRLQKCLRGDARKAVSSFLLHPANVPDVVNTLRVLYGRPEAIINALLAEV
FT                 RTTPAPRAEKLESVINFGLAVRNFCAHLVSTNQQVHLANPILIQELVEKLP
FT                 ASIKLDWALYSQRLVSVDLRAFADYMNVIITAASSVTSIGEGSSKVKGKAV
FT                 VNSHVSEDYVSKVHEDSEKREASVSSRIERLCVVCKAAGHKPKDCGLFKSK
FT                 TLCDRWNTAQDLNLCKRCLYPHGKWPCKASNCGVDGCEERHHRLLHPGNPR
FT                 TDDNLPTLVSGVISVHQQHHQILFRIIPVLLHSKGRSIFTFAFLDSGSDST
FT                 LIEKSLADQLGVNGPISPLCMQWTNGVKRTEEESQLIQLSISGMVSEKQFK
FT                 LRNVQTVDSLELPRQSVFFDEFKDKFPYLRGLPIQSYTNAVPGILIGLDNT
FT                 RLKTTLKIHEGRENEPVAAKTRLGWVLYGRSGEEGEYSSQRVLHICAKSRD
FT                 EELHELVKSFFSVESVGVAVTKAAESADEQRARQILESTTKRVDSGRFETG
FT                 LLWRFDNVQFPDSRPMAERRLKCLERRLSKSLTLYDNVRQQISEYVAKGYA
FT                 HRVTPQELGRTDPERTWFLPLGVVENPKKPAKVRIIWDAAASVRNISLNSV
FT                 LLKGPDLLTSLQSVLCRYRQREVAINGDIMEMFHQVEIRPQDRPAQRFLWR
FT                 NQPTEPIQVFEMNVATFGSTCSPSSTQYVKNLNAAEHAEEFPKAARAITEN
FT                 HYVDDYLDSVETVEEAVQLAMEVKEVHERAGFLIRHWMSNSTEVLQQIGER
FT                 NTKSVKSFVMDKGSNLERVLGMV"
FT   CDS           4613..6286
FT                 /product="BEL-880_AA-I_3p"
FT                 /translation="MLLMKPQNGVEAPVSAKKVGGLRRRSRTRAEQDWPNE
FT                 TIEIDSEEELKVIQVHLCQTEEQVIDFKRFSLWERLIGAITFVRRFGDPNW
FT                 KKQNLVEVGTTPSSEERRQAANLVFKLIQKEAYSQEYAVLQKNQQSSKLDK
FT                 KSRIYKLSPFLDDTGVIRMGSRPKAADCVSHEAKFPVILPKEHYATQLLIG
FT                 WYHRMYKHGNNETVVNELRQRFHVSELRVAVKKVADRCCLCKIKKCSPKAP
FT                 PMAPLPAARLKPYVRAFTFTGLDYFGPLNVRFGRGCIKRWVALFTCLGTRA
FT                 VHLELAYSLSTESCKTAIRRFVARRGAPKEIYSDRGTNFQGASAELRQQIK
FT                 AINEELAEVFTNAETQWRFNPPYAPHMGGVWERLVRSVKQGLEQMQLPKNP
FT                 DEETLVTALAEVESIVNSRPLTYLPIDSEESEALTPNHFLLLSSSGVVQPT
FT                 VAPINEGTASRSNWCHIKIMLDRFWQRWIREYLPVIARQPKWFGEVVPVKI
FT                 GDLVIVVEEGVRNSWIRGRVVRVYTGSDGRVRSADVQTSMGIMRRPVTKLA
FT                 VLNVAKEESTA"
FT   CDS           3916..4719
FT                 /product="BEL-880_AA-I_2p"
FT                 /translation="LPQEDVFSFSLTLREDLKRLLHGSSVPSKRELLSLVM
FT                 SVFDPLGIVAPFVVHGKVLVQEVWKSGVGWDEQLPADIIPQWKKWVNLFGT
FT                 LETVRVPRCYFPGYSPNTYESLELHVFVDASSAAYAAAAYFRVDDGGTIRC
FT                 SLVSAKTKVAPIKLLSIPRLELQAAVIGTRLRKTIISDHTLSIKRTIMWSD
FT                 SSTVLHWLRSDTRKYRQYVAFRVTEILEETDVSEWRKVPTGMNVADEATKW
FT                 GRGPSFGEESRWFKAPEQNKSRTRLAQ"
XX
SQ   Sequence 6318 BP; 1762 A; 1449 C; 1619 G; 1488 T; 0 other;
     aacttttaga ttatcaccga tttattcttt acctcacgag aacaacaaac accaaccaca        60
     atggactcca gtgatgccca atgtattatt tgccatcgac caaattccgt ggaggcgaac       120
     atggtacaat gtgatggttg cagccgttgg tatcatttct cgtgtgccgg cgtcggggac       180
     agcatagcgg atgcggacaa aagctatcga tgtgctctgt gcaagagaag ggattcgcat       240
     acagtgtcat cgtcaaaatc tatcacgtcg acgacggcca gtcaaagaga agctcgactg       300
     caattggaaa tgcagcgttt ggcagaggaa aaagcactgc aagcaaaatt gatggcagaa       360
     agagcaaagc aggaccagga gatgcaggag aaggccctgc tgttggagaa agatcgacga       420
     gaaaaggcca tcgcagatct tatgaagctg gaacaggagt ttctcgaccg caagtataag       480
     ttgctgcatg cgcagctaga tgcagacgat cgatcgagtg tggttagcaa tggatccgac       540
     gaggccgtcg ataaggttcg aggttggatc aataatcatc cggtgattct gggtaccaaa       600
     actggtgaaa gcgttcccac tggactcaca acacagacgg gtggtctggt cgaaacacaa       660
     ccgacttcgg cagcggcagg gcacgcacat gacaagataa tttccaacaa tgttgcgata       720
     gctgagactc gttcgaaatc gccagatatc gttatgtcgc ccattcccaa tcgagaagaa       780
     ggacatctag gccggcgtaa catgtcatca acaccccgag cagtaccggc tccgcctctg       840
     atggtaaact gggccgtaag tagcgaatat cgatcggcgc catcggctgc agcttcaggt       900
     gctgccgtcc aaactcagat gccgatttcc gtgtcccagc gggagaaccc aggtccccta       960
     ggtattgaga gtagtggtat agttcgccag gtgggatctt actatccgta cgttaccact      1020
     tcgtctctgg taagtacaac caattcggct gcctggagaa ctgtagagcc aattcatggt      1080
     agcagctata tgccatcgtc gaatgctatc ccactaacac gtccacagtt aggatttgcg      1140
     gatatatcga tgtacgttcc ctcttcgagc tttggccaga gctactcagg caatgttcaa      1200
     ccccctggct ttccgaatca ctcgtcttta tcaaacgctg gtcagttttc cacaacaaat      1260
     ccccctctac aaaccacctc gaaagtttgg gaaaatctta atccggtatc atgtcctccg      1320
     gtggtcagtg tttctagcta ccaaacgccc atatcatcag tgtcgattcc acagctacaa      1380
     accgtatcct ctcaaactct gtacggtcct aacgctcaac aactagcggc acgccacgtc      1440
     gttcccaagg aacttccaca attttcggga aatccagcgg agtggccact tatttggagc      1500
     agtttcgaga cgtctaccca aatgtgcgga tacaatgatg cggagaatct catgcgactt      1560
     caaaaatgtt tgaggggcga tgctcgaaaa gcggtaagca gctttcttct tcacccggca      1620
     aatgtgcctg atgttgtgaa tacattgcga gtactgtatg gacgaccaga agcgataatc      1680
     aacgccttgt tggctgaagt tagaacaaca ccggctcctc gagcagaaaa gttggagagc      1740
     gtcattaact ttgggttggc cgttcgtaat ttttgtgcgc acttggtttc gaccaatcaa      1800
     caggtgcact tggctaatcc aattctcatt caggaattag tcgaaaagct ccctgctagc      1860
     atcaagctag attgggcttt gtattcacaa cgattggtca gtgtggattt gagagctttt      1920
     gcggactaca tgaacgttat aattaccgcc gcaagtagcg ttacatcgat cggtgaggga      1980
     tcgtcgaagg tgaaagggaa ggccgtggtg aattcgcacg tgtcagagga ctacgtatcg      2040
     aaagttcacg aagacagcga gaaacgagaa gcgtctgtat catccagaat cgagcggcta      2100
     tgtgtagttt gcaaggcagc aggacacaaa cctaaagatt gcggattgtt taaatcaaag      2160
     acgttgtgcg acaggtggaa tacagcgcag gacctcaatc tatgtaagcg ttgcctctac      2220
     ccacacggaa aatggccatg caaagcatct aactgtgggg tcgatggctg cgaggaaaga      2280
     catcatcgct tgctgcatcc aggcaaccca cggaccgatg ataatctacc aacactagtt      2340
     tccggtgtaa tctccgttca ccagcaacac catcaaatac tttttcgaat tataccggtt      2400
     cttctccatt ctaagggccg atccatcttt actttcgctt tcttggatag tggatctgat      2460
     tccacactaa tagaaaaatc attagcggat caactaggag tgaatggtcc aatatcgcca      2520
     ttgtgtatgc agtggaccaa cggagtgaaa cgcacagagg aagagtcaca actgattcaa      2580
     ctcagtattt ctggcatggt ttcagaaaaa cagttcaaat tacgcaacgt tcaaactgtc      2640
     gactctttag agctaccgcg acaatctgtc ttcttcgatg aatttaagga caagtttccg      2700
     tatttgagag gtcttccaat tcaaagctac actaacgccg ttcctggtat tctgatcgga      2760
     ttggataata cgaggctgaa aacgacgctt aaaatccacg aaggccgcga aaacgaacca      2820
     gtcgcagcca aaaccaggtt gggttgggtt ctgtatggac gatcaggcga agagggtgaa      2880
     tattcatcgc agcgagttct ccatatctgt gcgaaatcca gggacgagga gctacatgag      2940
     ctcgtcaaga gtttcttctc cgtagaaagt gtaggagtgg cagtaacgaa ggcggcggag      3000
     tcagcagatg aacaacgagc aaggcagatc ctggaatcca ctactaaacg ggtcgactcc      3060
     gggaggttcg agactgggct cttatggcgg tttgacaacg tgcagttccc cgatagtagg      3120
     ccgatggctg agcgaagatt aaaatgcctt gaacggcggc tttcaaaatc tttgacgttg      3180
     tacgataacg tgagacaaca aattagcgaa tatgtcgcaa aagggtatgc tcaccgagtg      3240
     actccgcagg aactgggaag aactgatcca gaaagaacat ggtttctccc gttgggcgtg      3300
     gtggaaaacc caaaaaagcc cgccaaggtt agaatcattt gggatgcagc tgcgtcagta      3360
     cgaaatattt ccttaaattc ggttctactg aaggggccgg accttctgac atcattgcag      3420
     tctgtattat gcagatatcg gcaaagggaa gtcgccatca acggtgatat tatggaaatg      3480
     ttccatcaag tggaaatcag accgcaagat cgtcctgctc aaagattcct gtggcgaaac      3540
     caaccaacgg aaccaattca agtctttgaa atgaatgtcg ccacctttgg ttcaacatgc      3600
     tctccaagct ccacccagta cgtgaaaaac ttgaacgctg ctgagcacgc cgaagagttc      3660
     cctaaagcag ccagggcaat cacagagaat cattacgtgg atgattacct ggacagtgtg      3720
     gagactgtcg aagaggccgt tcagctggca atggaagtca aagaagtcca tgaaagagct      3780
     ggattcctaa ttcggcactg gatgtcgaac tccacagagg ttttgcaaca aatcggcgaa      3840
     cggaacacaa agtctgtgaa gagcttcgtc atggataaag gaagtaactt agaacgagtt      3900
     cttggaatgg tgtgacttcc tcaggaagat gtcttctcgt tttcacttac tctccgtgaa      3960
     gatctgaaac gcctactcca tggttcatct gtaccatcga agcgcgagct gctgagtctc      4020
     gtcatgagcg tgttcgaccc tctgggtata gttgctcctt tcgtagtaca cggaaaggtg      4080
     ctagtgcaag aagtatggaa gtctggagtc ggttgggatg aacagctgcc ggcggacatc      4140
     attcctcagt ggaaaaaatg ggtgaactta tttggaacgc tggaaacagt tagagtgccc      4200
     aggtgctact tcccaggtta cagtccaaac acctacgaat ctttagaact acacgtgttc      4260
     gttgatgcaa gcagtgctgc atatgcagca gcagcctatt ttcgtgtaga tgacggcggg      4320
     acaatccgct gtagtcttgt ctccgctaaa accaaagtgg caccgataaa gttactctct      4380
     attccacggc tcgaattaca agcagcagta attggtacac gtctaagaaa gaccatcatc      4440
     tcagaccata cgctttcaat caaacgtact atcatgtgga gtgattcgtc cacggtgcta      4500
     cactggctta ggtcagatac gaggaagtat cgccagtatg tggcctttag ggtcacggag      4560
     atcttggaag aaaccgatgt cagtgaatgg aggaaagttc caacgggtat gaatgttgct      4620
     gatgaagcca caaaatgggg tcgaggcccc agtttcggcg aagaaagtag gtggtttaag      4680
     gcgccggagc agaacaagag cagaacaaga ctggcccaat gagaccattg agatagattc      4740
     agaagaagaa ttgaaagtca tccaagtgca tctgtgtcaa acagaggagc aagtgataga      4800
     cttcaagcgc ttctctttgt gggaacggtt gatcggcgcg ataacattcg tacgtcgctt      4860
     tggagacccc aattggaaga agcaaaacct tgtcgaggtg ggaacgacgc cgagtagtga      4920
     agagcgcaga caagctgcaa atctggtgtt caagctgatc caaaaggaag cgtactcgca      4980
     agagtatgca gtgctccaga aaaatcaaca gtcttccaaa ctcgataaga aaagtcgcat      5040
     ctacaaacta tctccctttt tggatgacac cggagttatt agaatgggta gtcgaccaaa      5100
     agcggctgat tgcgtttctc atgaggccaa attcccagtt atcctgccaa aagagcatta      5160
     cgctacccaa cttcttattg gctggtatca tcgtatgtac aagcatggca acaacgagac      5220
     agtagtcaac gagctccgac aaagatttca cgtttccgaa ttgcgagttg ctgttaagaa      5280
     agttgcagac agatgttgtt tgtgcaaaat caaaaaatgc tcgccgaaag cacccccaat      5340
     ggcaccgctt ccagccgctc gtcttaaacc gtatgttaga gctttcacgt ttacgggtct      5400
     ggattatttt gggccgctga atgtacgctt cggccgtggc tgtatcaagc gatgggtggc      5460
     actcttcacg tgcttaggaa cgcgtgcagt ccatctagag ctcgcatatt ctttgtccac      5520
     cgaatcatgc aaaacagcga ttcgtcggtt cgtagctcgt cgcggagcac caaaagagat      5580
     ctactccgac agggggacca attttcaagg ggctagtgca gaattacgac agcagatcaa      5640
     agctatcaat gaggagttgg cggaggtgtt cacaaacgcc gaaacccaat ggagattcaa      5700
     ccccccgtac gctccccata tgggaggagt gtgggagaga ttagtacgct ctgttaaaca      5760
     aggattagag cagatgcaat tgccgaagaa tccggatgag gagacacttg tcaccgctct      5820
     agcagaagta gaatcgatag ttaactcgcg ccctctcaca tacttaccga tcgacagcga      5880
     agaaagtgag gccttgactc cgaaccactt tctgctgctt agttccagtg gagtggttca      5940
     accaacagtt gcgcctatta atgaaggcac ggcttcgcgg tcgaactggt gccatatcaa      6000
     aattatgtta gatcgatttt ggcaacgttg gattcgcgag tatcttccgg ttattgctcg      6060
     gcagccaaaa tggtttgggg aagtggttcc tgtcaagatc ggtgacttgg taatcgttgt      6120
     ggaggaagga gtaaggaaca gttggattag aggaagggtg gttcgagtat acactggaag      6180
     cgatggacga gttcgcagtg cggatgtgca gacctcgatg ggtatcatgc gacgccctgt      6240
     gacgaagctc gcggtattga atgttgccaa ggaagagagt accgcttaag atctcttgaa      6300
     gcaatacagg ccggggcg                                                    6318
//
ID   BEL-880_AA-LTR repbase;    DNA;    INV; 464 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 25.10, Created)
DT   21-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-880_AA-I;
KW   BEL-880_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-464
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-464
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3010-3010 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 464 BP; 174 A; 82 C; 82 G; 126 T; 0 other;
     tgttggcaac acaggtcgac tcgttctgta tcacccgtac tcaacgagag atgtgtgcga        60
     agttcgatag ggcatgtttt ggatcgagga caaaagaata gcaagaagca aactacaatc       120
     cacgtttaca tcttccatat atattatcaa ctaaatttgt tccaaaaata actaaatttg       180
     ttcctaaaat attgaaattg cgtaagtacc tacctaaatt aacaataaat aagcttatga       240
     actaaacatg taatcatgca gggacagaat tcaacagaat ctatactatc ggtatcacag       300
     atcggcgggt acttatatgt aggactgata atgtaagtaa aacttaacct aaaccaattg       360
     aaatggtaat aaatatgaat ttttttgtag ctaaaagcta actcaagcag aaaaaaaacg       420
     agtttgctcg tagaggtccg aaaagcatcc gtcccgtgat aaca                        464
//
ID   BEL-882_AA-I repbase;    DNA;    INV; 6225 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 25.10, Created)
DT   22-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-882_;
KW   BEL-882_AA-I; BEL-882_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6225
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6225
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..3941
FT                 /product="BEL-882_AA-I_1p"
FT                 /translation="MPGSSRSTRSRKVKTHCQACKEPDTDRMVSCGHCGSW
FT                 WHYTCVGVNESIAEPERTFTCPICQKPSSQIPVGGFAASKASSKASSMSTT
FT                 ASSRAKRARLQLERLEAQKALALKRLELERREQERNFEQQKKEAETLLQLK
FT                 LEQERQRKEAELEKLQLEMEQTVMNESFRLREIIDLESEDDEGDVRSKTSE
FT                 QSSFSKVERWRTMNSTMKTATEKVRTGTSNERATISTGTSARQGGARQPTS
FT                 IREDALEKALSSFSIGPVDTEPSLGGLIGRTETVTETAVVMDQRNTLPNTT
FT                 VPLSHTLTSVSNTAIVSAIENPQMSASTRPNAGNQISVDHRTGTVTVQDLL
FT                 GDSYPRSINQQRFIPRERNLSAVQPQQTEDHRAHFQYPQHSAPGPLLGSHA
FT                 PAFQHSRNDELVDCEPTPRQLAARHVVAKELPTFSGNPEDWPLFISSYENS
FT                 TRACGFSDAENLARLQRCLKGHALESVRSRLLLPSSVPHVLATLETLYGRP
FT                 ELLIHALLQKVRNVPAPKQDKLESLITFGMAVQNLSDHLEAGRQDAHLNNP
FT                 MLLFELVEKLPAQMKLDWSLYKQRCATVNIRSFAQYMQTLVRAATDVTLHY
FT                 DPTQYQQRVSKEKKNFCGAHVSDDSSSAAKEAELTQEKPYSNGPTCYVCKS
FT                 IEHRVKDCVEFDEKTVDERWKIIVQLGLCRLCLGAHGRRPCKVRKQCGING
FT                 CPNRHHPLLHCNQRWNSSKAEANEPNAGPSTDISSGAKAVTNHHCTGKSTL
FT                 FRIIPVTLYGNNRSVTEYAFLDDGSEKTLVDEDVVKKLGVSGEAQTLCLQW
FT                 TSNVKRTEADSQKVTLEISGNSGAVRHTLKDVRTVNKLELPRQSLYYSKLT
FT                 ESYSYLKGLPIQDYENVLPRILIGNDNAHVTSTLKIREGRPGEPIAAKSRL
FT                 GWTVYGSSQDRISGKSHSFHICECQNDELSVHDLVEKFFAVESLGIMHVEQ
FT                 PESEDKQRAKHILQETTKRIGQRFQTGLLWKYDCFEFPDSYPMAMRRLQCL
FT                 ERKMRNDPIIGDSVKMQLAEYQQKGYIHKATPVELKEADPRRTWYLPLGVV
FT                 INPKKPSKIRIFCDAAAKVDGISLNTMLLKGPDFLKTLLEVLFGFREMRVA
FT                 LCADVKEMFHQIQIIRDDRHAQRFLWREDPTKLPEVYLMDVATFGATCSPC
FT                 SAHYVKNLNAAEHAEEYPAAADAIIRKHYVDDYLDSADSVEEAVQLALQVK
FT                 YVHSRGGFHLRNWLSNSQEVLARVGEYEPAAEKLLHLDKNRSTERVLGMFW
FT                 RPEQDIFTFSTDLATNVEHPTKRQALRVVMSPFDPAACCASS"
FT   CDS           3917..6223
FT                 /product="BEL-882_AA-I_2p"
FT                 /translation="SGGLLCFFLIHGKILIQDLWRAKTEWDQLIPQELCER
FT                 WTRWTSMFRDLDQISVPRCYFAQHSVKDIMSLQLHIYVDASEDAYACVAYW
FT                 RAMFPSGIQVALIGGKSKVAPLKALSIPRLELMAAVIGVRFMKTIVNGHSL
FT                 LIEKVIFWCDSKTVLAWINSDHRNYRQFVACRVGEILSKSRAEQWRWISTK
FT                 KNVADEATKWGKGPSFSPSSRWFHGESGLYLPEDQWEKDESVANVKTNEEL
FT                 RTCMVHREVNVTPIINWDRFSKWTRLCRAVAYVLRYVGNLRRLASMEQRII
FT                 GSLTQDELYRAEATVFRWAQWDQYPDEAVTLTNGQVEQSGRQVKLERTSKI
FT                 RSLSPFLDELGVMRSDSRISTAKFVAFDTRFPVILPKNHRVTELVIEWYHQ
FT                 KYLHANGETIVNEIRQRFHIPQLRAKVRKVAKECRMCRVKKPVSAIPRMSP
FT                 LPAARLQPHVRSFSYVGIDYFGPVGVRVNRSIVKRWVALFTCMTTRAIHLE
FT                 VVHSLSTQSCKLAIRRFIGRRGTPTEIRSDRGTNFVGANNDLKKEMERTDQ
FT                 ELAATFTNANTKWIFNPPGAPHMGGIWERLVRSVKNALAAMETTRTPNEET
FT                 FATMLVEAESIINSRPLTYIPLETAEQEALTPNHFLLLSSNGVVQIPNKMT
FT                 DPKLACRTDWNHCKVALDQFWQRWVREYLPTIARRTKWFDDVKPIDVGDLV
FT                 MLVDEKIRNGWIQGRVVEIVVGKDGRVRDAVVQTANGLVHRPVAKLALLDV
FT                 GVGKAGPDGPLASLTGRG"
XX
SQ   Sequence 6225 BP; 1847 A; 1352 C; 1597 G; 1429 T; 0 other;
     aactaaaaga ttggctagta caacatcaca cgatgccagg aagttcgaga agtactcgca        60
     gtcgtaaggt taagactcac tgccaagcat gcaaggaacc tgataccgat cggatggtca       120
     gctgtggtca ctgtggatca tggtggcatt atacatgcgt gggtgttaat gaaagcattg       180
     cagaacccga aagaacgttt acttgcccga tttgtcaaaa gccatcctcg cagattccag       240
     ttggtggttt cgccgcaagt aaggccagta gtaaggccag ctcaatgtct acaaccgcca       300
     gctcgcgagc taagagagct cgtttacagc ttgaacgtct cgaggcccaa aaggctctag       360
     cattgaaacg gctggagctg gaacgtcgag agcaggagcg aaatttcgag cagcaaaaaa       420
     aggaggctga gacgttgttg cagcttaaac tggaacaaga aaggcaacga aaggaagcgg       480
     aactggaaaa gctgcagctg gagatggagc agacggtgat gaacgagtca tttcggttgc       540
     gtgaaatcat cgatttagaa tccgaggacg acgaaggcga tgttaggagc aaaacatcag       600
     aacaaagctc gtttagcaag gttgagaggt ggagaactat gaactccacg atgaaaaccg       660
     cgacagaaaa ggttcgaact ggcacaagta atgaacgagc aacaatatcg accggtacat       720
     cggctagaca gggaggtgca aggcaaccaa ctagcattag ggaagatgct ctggaaaaag       780
     cgttatcaag tttttcgata gggcccgtag atacggaacc atcattagga ggacttattg       840
     gtcgaaccga aactgttacc gaaacagccg ttgttatgga ccagcgtaac acccttccta       900
     atactactgt acctctgtcc catactctga cttcagtgag caacaccgcc atcgtttcgg       960
     caattgaaaa cccacagatg tcggcttcca cgcggccgaa tgcaggcaac caaatcagtg      1020
     tggatcatag aacaggtaca gtaacggttc aagacctact gggagattca tatccacggt      1080
     cgataaacca acaaaggttt attccaagag aacgcaattt atccgctgtg caaccacagc      1140
     aaactgaaga tcatcgagct cattttcagt atcctcaaca ttctgctcca gggccactac      1200
     ttggttctca cgcaccagca ttccaacatt cgagaaatga tgaattagtg gactgcgagc      1260
     caacgccacg acaattagcg gcaaggcatg tagtggcaaa agagctgcca accttttccg      1320
     gaaatccgga ggactggccg ctattcatta gctcatatga aaactccacc cgggcatgtg      1380
     gtttctctga cgcggagaat ttggcgaggc tacagcggtg tttgaaaggt cacgcccttg      1440
     aatcggtgcg tagtcgactc ctactccctt cgagtgtacc tcatgttctc gcaacgcttg      1500
     aaacgttgta tggaagaccg gagttgttaa tccatgcatt actacaaaag gtcaggaacg      1560
     ttccggcacc taagcaagac aaactagaat cgctgattac atttggcatg gcggtgcaaa      1620
     acctcagcga tcatttggaa gccggtcgac aggatgcgca tctcaacaac ccgatgctgt      1680
     tgtttgagtt agttgagaaa cttcccgcac aaatgaaatt agattggtcg ttgtataaac      1740
     aacggtgtgc aacagtaaat atccgatcgt ttgcgcagta tatgcaaacg ctggtgcgag      1800
     cagcaactga cgtaactctg cattacgatc caacgcaata ccagcaacgt gtttcgaagg      1860
     agaagaaaaa tttctgcggc gctcatgtgt cggatgattc atcgtctgca gccaaagaag      1920
     ctgaacttac tcaggaaaag ccatactcaa acggaccgac atgttatgtc tgcaaaagta      1980
     ttgagcatag agtgaaagac tgcgttgagt ttgacgaaaa aacggtggat gagcggtgga      2040
     aaatcatagt gcaactcgga ttatgccgcc tttgcttagg ggcacatgga agaagacctt      2100
     gcaaggtacg caaacaatgt ggaataaatg gttgtcccaa tcggcaccat ccgttgctgc      2160
     attgtaacca gcgatggaac agttctaaag cagaagcgaa tgagcccaac gcagggcctt      2220
     ccactgacat atcgagtggg gccaaagctg taaccaatca ccattgcacg ggaaagtcca      2280
     ctcttttccg tattattcca gttacgttat acggaaacaa ccgatctgtt acagagtatg      2340
     cgttcctgga tgatggatcg gagaagacac tagtagacga ggatgtcgta aaaaagctgg      2400
     gagtatcagg agaagcgcaa acattgtgtt tgcagtggac ttcaaatgta aaaagaacgg      2460
     aggccgactc gcaaaaagtt acgttggaga tctcgggaaa ttctggagca gttcgacata      2520
     cactgaagga tgtgcgcact gttaacaaac tagagttacc ccgacagtcg ctgtactatt      2580
     ccaaattgac agaatcgtat tcatatctga agggtctgcc gatacaggac tacgagaacg      2640
     tcttaccgcg tatcctgatt gggaatgata acgcacacgt gacttctaca ctcaagattc      2700
     gcgaaggcag accaggagag ccaattgccg ccaaatcacg actggggtgg acggtatatg      2760
     ggtcgagcca agatcgaata tcaggaaaat cgcacagttt tcacatctgc gagtgccaaa      2820
     atgacgaact atcagttcac gatctcgtag agaagttttt tgctgtcgaa agcttgggta      2880
     taatgcatgt ggaacaaccg gagtcagagg acaaacagcg agccaagcac attctacagg      2940
     aaacaactaa acgcattgga cagcgttttc agacgggact tctgtggaaa tacgattgtt      3000
     ttgaattccc agatagttac ccgatggcaa tgcggcgcct acagtgtttg gaacggaaga      3060
     tgcggaacga cccaattatc ggcgacagcg tgaaaatgca gcttgcggaa taccaacaga      3120
     aagggtacat tcataaggcc actccggtag agctgaagga agcagatccc cgtcgtacgt      3180
     ggtatctgcc tctaggagta gttattaatc cgaaaaagcc gtccaagatt cgcatatttt      3240
     gcgatgctgc ggcaaaagtt gatggtatat ccctaaacac gatgctgcta aaagggccag      3300
     atttcttgaa aacgttgttg gaggttctat ttggtttccg agaaatgcga gttgcgctct      3360
     gcgcagacgt taaagagatg ttccatcaaa tacaaataat acgagacgat cgtcatgccc      3420
     aacgatttct ttggcgcgaa gacccaacaa aactgccaga agtctacttg atggatgttg      3480
     ctacgtttgg agcaacgtgc tccccgtgtt cggcgcacta cgtaaaaaat ctgaatgcgg      3540
     cggaacatgc agaagagtac ccggcagctg cagatgcaat aatacgaaaa cattatgtgg      3600
     acgactacct cgatagtgcc gacagtgttg aagaggcagt acaactagcc ttgcaggtta      3660
     aatacgtcca ttcaagggga ggattccact tgcggaactg gctctccaat tctcaagaag      3720
     tgctcgcaag agttggggag tacgaaccgg cagccgaaaa acttcttcac ctggataaaa      3780
     acagatcaac tgaacgcgtg cttggaatgt tctggagacc ggaacaagac atttttacat      3840
     tctccactga cttggctacg aatgtcgagc atcctaccaa gagacaggca cttagagtgg      3900
     taatgagtcc atttgatccg gcggcctgtt gtgcttcttc ttgattcatg gcaaaatcct      3960
     aatacaagac ttgtggcgtg ccaaaaccga atgggatcag ctaattccac aagaattgtg      4020
     cgagagatgg acgcggtgga catccatgtt ccgagacctg gaccaaataa gcgttccccg      4080
     gtgctatttt gcgcaacact cagtgaagga tatcatgtca ttacagttgc acatatatgt      4140
     ggatgcgagt gaagatgcgt acgcttgtgt ggcctactgg cgcgcaatgt ttcctagtgg      4200
     aattcaagtt gcgttgatcg gtggaaaatc taaagtagct ccacttaagg cgctttcgat      4260
     acccaggcta gagttgatgg cagcggtaat tggcgttcgt tttatgaaaa ccatagtaaa      4320
     cggacattcg ctgttgattg agaaagtgat attctggtgt gactccaaga cagtgctagc      4380
     atggataaac tctgaccata ggaattaccg acagtttgtt gcatgccgtg tgggagaaat      4440
     cctgtcgaag tcacgagccg aacaatggag atggatatcg acgaagaaaa atgtagctga      4500
     tgaagcaact aagtggggta aaggacctag tttttcaccg agtagccgtt ggtttcatgg      4560
     cgaaagtggt ctatatctac cagaagatca atgggaaaag gatgaaagtg tggcgaacgt      4620
     gaaaaccaac gaagagttgc ggacttgtat ggtacaccga gaagtaaatg taacgccaat      4680
     catcaactgg gatcgatttt cgaagtggac tcgactctgc cgagcggtgg cttatgttct      4740
     tcgctacgtg ggaaacctgc gacgtcttgc aagcatggag caacggatca tcggctcgct      4800
     cacgcaagac gagttgtata gagcagaagc aacagttttt cgttgggcgc aatgggatca      4860
     gtatcctgat gaagcagtaa cacttaccaa cggacaagtt gagcaatcag ggcgacaggt      4920
     taagttagag agaaccagta aaattcgaag cctttcaccg ttcttggatg agttgggtgt      4980
     tatgcggtcc gacagcagaa tcagtacggc gaaatttgtt gctttcgaca cgaggtttcc      5040
     tgtaatctta ccaaaaaacc accgagtaac agaacttgtt attgagtggt atcatcagaa      5100
     gtatctccac gcaaatggcg aaaccatcgt gaacgagatt agacaacgtt tccatatacc      5160
     acagctgcga gctaaagtac gaaaagtggc gaaagaatgt aggatgtgca gagttaagaa      5220
     accagtatca gcaataccac gaatgtctcc tcttccagct gctaggctac aacctcatgt      5280
     acgttcattt tcatatgtcg gtatcgacta ttttgggccg gtcggagtaa gagtcaaccg      5340
     cagcatagtc aaacgctggg tcgctttatt tacgtgcatg actacaagag cgatccacct      5400
     tgaagtagtg cattcattat cgacgcagtc ttgcaagttg gcaatcagac gtttcattgg      5460
     gcgtagagga acaccgactg aaattcgcag tgatagaggc acaaatttcg ttggagccaa      5520
     caatgatttg aagaaagaaa tggaacgaac agatcaagaa cttgccgcga cattcaccaa      5580
     cgcgaatacg aagtggatct ttaatcctcc tggagcgcct cacatgggag gcatatggga      5640
     acgtcttgta aggtccgtca agaatgctct tgctgcgatg gaaacaacta gaacaccaaa      5700
     cgaagaaact ttcgctacta tgctagtgga agctgaaagt ataataaatt cgagacctct      5760
     gacgtacatc cctctggaga cggctgaaca ggaagctcta acaccgaacc acttcctctt      5820
     gttaagttct aatggtgtag tacaaattcc caataagatg acggatccta agctagcctg      5880
     cagaactgac tggaaccatt gcaaagtcgc attggaccag ttttggcaaa gatgggtgcg      5940
     agaatatctt ccaacaattg caaggcgtac aaagtggttc gatgatgtga agcctatcga      6000
     cgtgggagat ttagttatgc tggtggatga gaaaatacgg aatggttgga ttcaaggacg      6060
     cgtagtagag atcgtcgtag gtaaggatgg ccgagttcgg gatgccgtag ttcaaaccgc      6120
     caatggattg gttcatcgcc cggtagctaa actggcatta ttggatgtcg gcgttggtaa      6180
     agccggacca gatggacctc tggccagcct tacgggtcga ggaac                      6225
//
ID   BEL-882_AA-LTR repbase;    DNA;    INV; 623 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 25.10, Created)
DT   22-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-882_AA-I;
KW   BEL-882_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-623
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-623
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3011-3011 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 623 BP; 196 A; 95 C; 144 G; 188 T; 0 other;
     tgttgcggta actcgcactg aaccccatgt ggtcggtgta gaggccgaac ccggtgatga        60
     gcgaaatgac aataggagaa atgtgttgac agaagtttga tatgcaaggg atgaacgatg       120
     agggaaaacg gacactattg ttgttaaagg gatcgctaag attgatttgt tccacgaggc       180
     attatagaaa gtttataaaa ttagtttaag ctatatctta tttgtgaatt tctctctatt       240
     gatttgagta agtacttgga gatttgttat tgaaaaatga atttatacat aatgccgaaa       300
     ttgtattcta gttcacggtg gtcgctgata agcgtaaaca cgcagggtag tgaaacccat       360
     atttgatacc tgacaagtaa atggtgaaac acagttgaaa tcgtataatc taatgtttaa       420
     actacttgca gtcagctata aggaattgat tagggctttg ctggggagag tcgaaagctt       480
     ttcggagtaa ggatagacca atgtaagtga aagatacgat taagtttgtt acgattctaa       540
     cacatattat gaatacagct tttagcgttc gttcgtgaca tcacagcgtg ctcaaaagac       600
     tttcgtttac tccttcccca aca                                               623
//
ID   BEL-883_AA-I repbase;    DNA;    INV; 5941 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 25.10, Created)
DT   24-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-883_;
KW   BEL-883_AA-I; BEL-883_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5941
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5941
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(23..3499,3503..5938)
FT                 /product="BEL-883_AA-I_1p"
FT                 /translation="MSQKHDGFDCKTCDRSNACDNMVMCDACLDWYHLSCA
FT                 GVSPGVEKRPWRCETCPPLPPVPTLNVENVGKNRKGKTVAKPKVPMVSETS
FT                 SVANSKKSGKAQKAKVPNDEAPKDVLPPSASSTNNKTPKKHPGVPKRADTV
FT                 KASVQSGTQSSRALAQMSLLRLEEKQKLEEQKLENQRREIQKERERLRKER
FT                 ELEKQENAITRKQLQILEQYLEEKHDLEEQLVEGEAFSQCTSRSGKSMTRK
FT                 WLEDQQTRSETVQKNVAERGKISYASENSTEESANEEEGNMQAPVVKNSKG
FT                 TPETHANQVRNDSRRGTPRYECANRDNEQEESIALPSVNQLAARQLWPKNL
FT                 PIFSGDPEEWPIFYSSYLDSNAACGYSSVENIIRLRDCLKGPAREAVVTKL
FT                 MFPHAVPSIIETLRRLYGRPELLVRNLLGKVRRLDAPKPERLDSLINFGMA
FT                 VQQLCDHLEAANLRGHLTNPTLLEELVDKLPAAIKLEWVRHRRAFVEPSLK
FT                 EFGEFMDRLVVDASEVTSIVPIKHNQKAQIHTHNENGNFPPVNPSRKPCPI
FT                 CSKLDHRVRNCEDFKEMSLDERWEAIECNRLCEVCLSNHGNWACKSRYYCN
FT                 VGNCRARHHPLLHRDVTTTAIQADCKAHRIAPSAVLFRVVAVTLFNGTRSV
FT                 DTFAFLDEGSSHTLIDASITQSLGAVGVPEPMELTWTSNVTRKESTSERVD
FT                 LMISAQGGQEQFKLLDARTVSALNLPKQNLRVDKVSDQFEHLDNIPITSFR
FT                 NAEPKLLIGLQNLELIAPIESRIGRPGEPIAVRSALGWAIYGPCRKAPSLR
FT                 PFVGLHQSDQELNEIVRQQFVLEDTGICPTVPLESAEDARARELLESTTFR
FT                 ENGRFVTGLLWRSHDIRFPDSLPMATKNLETKLTRDPELRSNVHQQIHEYI
FT                 KNNYAHKATLDELRMANSSRVWYLPLNVVTHPRKPEKKRLIWDAAAKVNGV
FT                 SLNSQLLKGPDLLVLLPGVICKFRERRIAFGSDIEKMFHQIRIKPEDTHSQ
FT                 RFLFRFDENQLPDVYIMDVATFGATCSPCMAQYVMHRNADESANEFPEASA
FT                 AIKQKTYMDDYFDSADTPEEASERALQVKLIHSRGGFNMRNWVSNSIEVLR
FT                 RLGEASEQQLLTIDCSWEEKQQRVLGMAWHPEKDVFVFSTSWHSELVPYVH
FT                 GVLEGRRPTKRIALRIIMSLFDPLGLLSPFLIHGRMLIQDLWRIGLDWDTE
FT                 IGDMENEKWRRWIALLPSIGSLEVPRCYFGYAHPKSYESLQLHVFTDASEL
FT                 GYGCAAYFRIVNNGQVKCALVMARSKVAPLKYQSIPRMELQAALLGARMSR
FT                 TVSESHTLPISKKYLHTDAEVVLAWIRSPHRNYKQFVAHRIGEILTLTEPG
FT                 DWRHVGSKENLADCLTKWGKHTEPDLARNWLEARNSFLYHEEEHWPKQKKI
FT                 PETSEELRAHLLLHHIVVPEGLINVERFSKWSVLVRTMALVNRFVSNCRRK
FT                 MKGQPIEVLRITECQKQLLLRPIPAIIIPLRQEEYLKAEQFLWQVAQYAFY
FT                 PDETKTLKNNRNEPQSSKWMSLEKNSPLYRLSPFADEFGVIRVEGRTANAS
FT                 YATFDARFPVILPKDHPITTLLLKDYHCRFGHANRETIVNEVRQRFHIFNL
FT                 RSTVNKVMKACQRCKVTKCKPVNPRMAPLPEERLTPFLRPFSYVGVDYLGP
FT                 LETSVGRRKEKRYVAVFTCLVIRAVHLELAYSLSTDSCVMAVRRFIRRRGP
FT                 PVEIFSDNGTNFVGASNELKEQIRSINCECANTFTDARTKWTFNPPSAPHM
FT                 GGVWERMVRSVKEAIRALDDGRKLNDEILITVLAEAEGFINSRPLTYMPQE
FT                 SADYEAITPNHFLLGNSSGAQDPLKAPADMAAALRSSYQRSQLLSDAVWNR
FT                 WLKEYFPTMNKRSKWLAESKPVQVGDLVYVAEGNRRAWVRGRIQQVIPGSD
FT                 GRIRQAIVRTAAGSELKRPLVKLAVMEVGSGESYKDPIGTCNDPRGG"
XX
SQ   Sequence 5941 BP; 1777 A; 1348 C; 1501 G; 1315 T; 0 other;
     aattctcaaa gatttacccg aaatgtcgca gaaacacgat ggattcgact gcaaaacgtg        60
     cgaccggtca aatgcttgcg ataacatggt gatgtgcgac gcatgcctag attggtatca       120
     tctgagctgc gctggtgttt cgccaggagt ggagaaaaga ccgtggcgtt gcgaaacatg       180
     ccctccattg ccccctgtac ctacattgaa cgtcgaaaat gttgggaaga atcggaaggg       240
     aaaaaccgtt gctaaaccta aagttccaat ggtttcggag acgtcgtctg ttgctaactc       300
     caagaaaagt ggaaaggccc agaaagcgaa ggttccgaat gatgaagctc cgaaagacgt       360
     cttaccgcct agtgcgtcat cgaccaacaa taaaactcct aagaagcatc caggagttcc       420
     aaaaagggct gatactgtaa aggcatctgt gcagtccggc actcaaagct cccgagcctt       480
     agcacagatg tcactgctgc gactggaaga gaaacagaag ctggaagaac agaaactgga       540
     gaatcagcga agagagatac agaaagaaag ggagcgatta cggaaagaac gagagctaga       600
     aaagcaggaa aatgcgatta cgaggaaaca gttgcagata ctagaacagt atttggagga       660
     gaagcatgac ctggaggaac aactggtaga aggtgaagcc ttctcccagt gcacctcccg       720
     cagcggaaaa tccatgacaa ggaaatggct tgaagaccaa caaactcgca gcgagaccgt       780
     gcagaaaaat gttgctgaaa ggggaaaaat atcctacgca agtgaaaatt ctacggaaga       840
     gtcagcaaac gaggaagaag gtaatatgca agcaccggtg gttaaaaatt cgaagggtac       900
     accagaaacc catgcaaacc aagttagaaa cgactcgcgg agagggactc ccaggtatga       960
     atgcgccaac cgagacaacg agcaagaaga gtcgatcgcg ctgccaagtg ttaaccagct      1020
     agccgctaga caactctggc ctaaaaacct gccgatcttt tcgggggacc ccgaagagtg      1080
     gcctattttt tatagcagct acctagattc caatgctgca tgcggatact cgtcagtcga      1140
     aaacatcatt cgattgagag attgtctcaa aggaccagca cgtgaagcag tggttaccaa      1200
     actaatgttc ccacatgcgg tgccttcaat aatagaaacc cttcgaagac tgtatggccg      1260
     accggagctg cttgtgagaa atctattagg gaaagtgcga cgcctggatg caccaaaacc      1320
     agagcgtctt gatagtttga ttaactttgg catggcggtt cagcaacttt gtgatcacct      1380
     agaggctgca aatctgcgcg gccacttaac gaacccaacg ctactggaag aactagtaga      1440
     caaattaccg gcggctataa aactagaatg ggttagacat aggcgagcgt ttgttgaacc      1500
     gtccttgaag gagtttggag agtttatgga cagattagta gttgacgcaa gcgaggtcac      1560
     atctatcgta ccgattaagc ataatcaaaa agcccaaatt catacccata atgaaaacgg      1620
     taattttccg cccgttaacc cctcacggaa accgtgtccg atctgttcaa aactcgatca      1680
     ccgcgtgaga aattgcgagg atttcaagga aatgagtcta gatgaacgtt gggaagcgat      1740
     tgaatgtaat cgactttgcg aagtatgtct ctccaaccat ggtaactggg cctgtaaatc      1800
     gagatattac tgcaacgtag ggaattgtcg tgcgcgacat caccctttac tccaccgaga      1860
     cgtgacgaca actgcgatac aagccgactg taaagcgcat cgcattgcac caagcgccgt      1920
     gttattccgc gttgtagcag tgacgctttt taacggtacg cgaagtgttg atactttcgc      1980
     ctttttggac gaagggtcct cgcacaccct aatagatgca agcataacac aaagtcttgg      2040
     agctgttggc gttccggaac cgatggaatt gacatggacc tcaaacgtga ctcgcaaaga      2100
     gagtacatca gagcgggtcg acctcatgat ttccgctcaa ggcggacaag agcaattcaa      2160
     actgctggat gcgcgcacag tcagcgctct aaatcttcca aaacaaaatc tgcgagtgga      2220
     taaagtatcc gaccagttcg agcacctcga caatatcccc ataacgtcat tccgaaacgc      2280
     agagccgaag cttctcattg gtctgcagaa tctggaatta atcgcaccta tcgagagtcg      2340
     aataggaaga ccgggtgagc ctatcgcagt gaggagtgca ctaggttggg cgatttacgg      2400
     accatgtagg aaggcaccta gtttgcgtcc attcgtggga cttcaccaat ccgatcaaga      2460
     gttaaacgaa atagtccgac aacaattcgt tttagaagat actggaatct gtcctactgt      2520
     gcccctagaa tcggcagaag atgcacgcgc tagagaactg ttggagagca ccacgtttcg      2580
     tgaaaacggg aggtttgtca ctggcctatt atggaggagc catgatatac gattcccgga      2640
     tagtctgcca atggcgacca aaaatctgga gacgaagttg acgagagatc ctgaactgcg      2700
     cagcaacgtg caccagcaga tccatgaata tattaagaat aattacgctc acaaagcaac      2760
     gctagacgag cttagaatgg caaattcgag tcgtgtgtgg tatttgcctc tcaacgtggt      2820
     gacccatcca aggaaaccag agaagaagcg gcttatttgg gacgccgcgg ccaaagtaaa      2880
     cggagtgtct ttgaattctc aactcttgaa aggtccggat ttgttagtgc ttttgcccgg      2940
     tgtgatctgc aagtttcgcg agagacggat tgctttcgga agcgacattg aaaaaatgtt      3000
     tcaccaaata cgaattaaac ctgaggacac acactcccaa cgatttctat ttcgatttga      3060
     tgaaaaccag ttgccagatg tctacataat ggacgtcgcg accttcggcg ctacttgttc      3120
     gccatgtatg gcgcaatatg ttatgcatcg gaatgcagac gaaagtgcca acgagttccc      3180
     ggaagcatca gcggccatca aacagaagac atatatggac gattactttg atagtgctga      3240
     tacaccagaa gaagcatctg agcgagcttt gcaagtgaaa ttaatccact cacgaggagg      3300
     attcaacatg cgtaattggg ttagcaacag catcgaagta ttgcggcgct tgggagaagc      3360
     atcagaacaa cagttattga ccatcgactg cagctgggag gaaaaacaac aacgggtact      3420
     tgggatggca tggcatcccg agaaggatgt atttgtgttc tcaacgagct ggcatagtga      3480
     attggttcca tacgtacact gaggtgtatt agaaggacga aggccgacta aacgaatcgc      3540
     tctgcgcatc ataatgagcc tatttgaccc actggggctg ctttcaccgt tcttgattca      3600
     tggtcgaatg ttgattcaag atctttggcg aataggcctg gactgggata cagaaatagg      3660
     cgacatggaa aatgaaaagt ggcgtcgatg gatagccttg ctccccagca ttggtagttt      3720
     ggaagtaccc cgatgctatt ttgggtacgc tcatccaaaa tcgtacgaat cactgcagtt      3780
     acacgtcttt actgacgcca gcgagttggg ctatggatgc gctgcatact ttcgcatagt      3840
     aaacaatggg caagtaaagt gtgcgttggt catggcacgc agtaaagtgg ctccacttaa      3900
     gtatcagtcc attcctagga tggaactaca agccgcactt ctgggagcaa gaatgtcacg      3960
     cacagtgagc gaaagtcaca cgctgcccat ctcgaagaaa tatttacaca ctgacgcaga      4020
     agttgtccta gcatggatcc gctctccgca taggaactac aaacagttcg ttgcacatag      4080
     aataggggaa attctgactc ttactgaacc cggagactgg cgacatgttg gttcaaaaga      4140
     aaacttggca gactgtttga caaagtgggg caagcacaca gaacctgacc tggctagaaa      4200
     ttggctcgaa gcaagaaatt catttctcta ccacgaagaa gaacattggc caaaacagaa      4260
     gaagattcca gagacgtcag aagagctaag agcccacctc ctacttcacc atattgtagt      4320
     acccgagggc ctgataaacg ttgagagatt ctctaaatgg agtgtattag tccgtaccat      4380
     ggcactggtc aatcgttttg tttcaaactg tcgtcggaag atgaaaggac agccaataga      4440
     agtcttgaga atcaccgagt gtcagaaaca gctacttcta cgacccattc cagccatcat      4500
     catccctctg cgacaggaag aatacttaaa ggcagaacaa tttctctggc aagtggcaca      4560
     gtacgccttt taccccgacg aaaccaaaac cttgaaaaac aacagaaatg aaccgcagtc      4620
     aagtaaatgg atgagcctcg agaagaacag cccattgtac agattgtctc cctttgccga      4680
     tgagttcgga gttattaggg ttgaaggtcg aacagcaaat gccagctatg ccacgtttga      4740
     tgcacgtttt cctgtgatat tgccgaaaga ccatccaata accacgctgt tgctaaaaga      4800
     ttatcactgc cgatttggac acgctaatcg agagaccata gtgaacgagg tacgacaacg      4860
     gtttcacata ttcaatttgc gatccacggt gaacaaggta atgaaagctt gtcaacgctg      4920
     caaggtgacg aaatgcaaac ctgtgaaccc acgaatggcc ccgctccccg aagaacgatt      4980
     gacgccgttt cttagaccgt ttagttacgt gggcgttgac tatttaggcc ctctagaaac      5040
     atcggtcggg cgaaggaagg aaaagcgtta cgtagctgtc tttacctgtc tagtgattcg      5100
     cgctgttcat ctcgaactgg cctacagtct ttccactgac tcctgtgtaa tggccgtgag      5160
     gagattcatt cgtcgacgtg ggcccccggt ggaaatattt tctgataacg gcaccaactt      5220
     cgttggcgcg agcaatgaat tgaaagagca aatcagaagc atcaactgtg aatgtgctaa      5280
     tacctttact gatgcgcgca ccaaatggac ctttaaccca cccagtgcac cacacatggg      5340
     tggtgtgtgg gaacggatgg taaggagcgt taaggaggca atacgcgcac ttgatgatgg      5400
     ccgcaaacta aatgacgaga tattgataac agtgttagca gaggcagaag gtttcatcaa      5460
     ttcccggcca ctcacctaca tgccacaaga gtcagctgac tacgaagcca tcaccccaaa      5520
     tcacttcctt ctaggaaact catctggagc tcaggacccg ctgaaagctc cagcagatat      5580
     ggccgctgca ctacgaagca gttatcagcg gtctcaatta ttgtcagacg cagtttggaa      5640
     ccgctggctg aaagagtatt ttccaacaat gaacaagcga tccaaatggt tagcggagag      5700
     taagccagtg caggttggag acttagttta tgtagctgag gggaacagac gagcatgggt      5760
     acgaggcagg attcagcagg taatccctgg gagtgatggc aggatacgcc aagcgatagt      5820
     tcgaacagct gcaggtagtg aactcaaacg accactcgtg aagctggcgg ttatggaagt      5880
     tggaagtggt gaatcttaca aggaccccat aggtacctgt aatgatccac ggggtggggg      5940
     a                                                                      5941
//
ID   BEL-883_AA-LTR repbase;    DNA;    INV; 520 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 25.10, Created)
DT   24-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-883_AA-I;
KW   BEL-883_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-520
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-520
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3012-3012 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 520 BP; 201 A; 83 C; 97 G; 139 T; 0 other;
     tgttctggta ccactgcatc gcccgaaaca gtcggacaga agtttgacag tgaacaaacg        60
     tcagcgatga aaggtcaggt agggaataaa atgcaaaaac agtaacatgt gcgactcgcg       120
     atacaattgc tatcagatat tgaaatccta ttaaaataat aattataaac taactgttga       180
     ggttcaaact tagttagact gttctcgtgc gttagtttaa aataacatag cgcagttttg       240
     aatttaaaga gaaacagtgg gtaagaaacc attatacaaa gtttgacatc atctaacagt       300
     aaataatgaa ttcgtttaca tcactagaat tgattacccc tattacccgg acgaaataag       360
     agaagaaata gcttcggata aatttagata aagggaagac taaatgtaag taactacatt       420
     gaattgaaag tggaattata ataaataaaa aaatcgtttt cagctttgag ctgcccatcg       480
     agaataaagc tgcttcaagg aacttctatc taaccgaaca                             520
//
ID   BEL-884_AA-I repbase;    DNA;    INV; 6533 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 25.10, Created)
DT   24-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-884_;
KW   BEL-884_AA-I; BEL-884_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6533
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6533
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6533 BP; 1827 A; 1484 C; 1601 G; 1621 T; 0 other;
     ttcttcaaag attttctgca ctgaagatgg agagtaagcc tggaaaacat tgtgccaagt        60
     gtgaccgacc ggatactgtg gataacctcg ttggctgcga taagtgtgag acatggatgc       120
     acttcggttg cgcgggcgtg acagattcca tagcagatcc gaaccgcagt tggaaatgtg       180
     atcgatgcag atcgctctca gaggcatcag tttgccaatc actcctatca gttggtcgct       240
     cgtccggaag tagtcgccga tcccgtatag acctcagtct caggatgttg gaagagcaaa       300
     aagcaatcag gatgaggatt ctggaagagg aagcagctca ggtggcggcg aggaagaaaa       360
     tcgccgaaga agaggagaat tttctgaaac agaaatacgc attactcctc gcagaagcgg       420
     acggtgcgga tgatggtgtc agtaggagat cgaggcttag cagtcgagcc agtcgggaga       480
     aagtacagtc gtggcttagt ggacaggaag tcggtgcatc acaacaggtg gcagtagcgc       540
     catccagcag catttcgcca tcgacggtaa tccaacatgg agctcaacag tcgactattc       600
     caacatccat ccccataacg gtaaatttgt ttctcacatg gaaataccta ttcagcagcc       660
     gctggtaagt acaccggtgc tgacccaata tgattcccca gtgggaataa attccttcac       720
     tgtgacgcgt cctagcgttg ctcaattgaa aaataaaagt gcccctccat cgctcaatta       780
     cccccaccaa ccgtctgacg ttccaccctt tgaattcgtt acctcatcct acaatgttcc       840
     aacagtttca agtaacacac catggtgtgg taataaccct ggtcattcta tgggttttgg       900
     gagcattaga aattcaattg cgaacaatgt acccattatt tcctcgagtg aatcgtttgt       960
     aaggagttcc ccacagtgta cctattatga acatccagtc gtttcgggca acaattctgc      1020
     tcctgttcca agtgctgctc cagagttagc gttgagttca agacaccttg gtggtttccc      1080
     gttacacgac gccaaccgtt cgcatttgga agaagccttt gtggtgcctg ctttcactcc      1140
     aacatggaac cactcgagta gtcgacaagt gggaacaaat ttgcgtacga atccgaccat      1200
     catttcatca gtaccatcaa catcttgccc tgttggaata aacctgtatt cctcccagaa      1260
     tcccgtttcg tcagcacccg tttcgagtgt accaatgctg agttcaggtt tcaattcaac      1320
     gtggatcaat aataatctga tctgtactgc tgcgggagga acacaatcag cgcttggaag      1380
     tacaactgca gttccgccac gagttggagc gatgttcgtc aacagaggag gagcttcaat      1440
     caatttcaac aactctgtgc cgccttcagt gagtatcgca tctacccaga tcgagatgcc      1500
     aacatgccaa ccggcatcca attcagcgaa ttgtggcaat ccttctctgg gctaccctca      1560
     accgtctaca gtaccagtgc gacgagtacc atccagtgaa cagctagctg cgaggcaagt      1620
     aatgccacga gaactgccta acttttccgg tgacccacaa gattggccga tattctacag      1680
     ctcattctgt aactctacgg atgcctgtgg ttttagtgat tccgaaaatt tgacccggtt      1740
     gcagcgttgc ctgaaaggga atgcgttaga agcggtaaaa agtcggctac tacttccaca      1800
     gtctgtaccg tttgtaatcg atatattgcg aaggttgtat ggtcgaccgg aaatcctgat      1860
     tcactcgctt cttcagaaat tgcgcgccgt ttctcctcca aagtccgaca acttgcaatc      1920
     acaaatcacc tttggtcttg ctgtacaaaa tgttgtcgat catatgacaa tcgccaatct      1980
     cgttgatcat ctgtggaatc caacactgct tcatgagtta gttgagaaat tgcctcctca      2040
     gctcaaaatg cagtggtcct accacaaaag tagatgcact tatgtcaacc tggcgacatt      2100
     tagcgcattc atgtctgaga tagtagtgat ggcttcagat gtcacgcttc ctacggacac      2160
     attcgtcact ggtacaaaac caaataaagc tggaaaagag aagccaaaac tatatctgca      2220
     tgcggagccg aatctgaagg aggaaaagcc gtcatcagtt accgaaaaag taaagctatt      2280
     gaaggagtcc gcagataaga catgtttgcg acagaagcag tcacgaaatc gtggattgtt      2340
     ttcagtttaa ggcactcgat atcgacggta ggtggaagac agtaaaacag aataacctgt      2400
     gtcgaagctg cctcgtacct catcgtaaat ggccttgtcg cagcaggaaa gaatgcggcg      2460
     tagagggatg taaagtattc caccataaac ttctacattc ttctgggaga cgttccctga      2520
     ataagacaga aattgccgaa gcgtcgggat ccccaaatcc gaaaactgta gtgcaccaaa      2580
     atctacacaa ttcggttgcg tattcgctgt tccggtattt gccggtcaca atcttcggca      2640
     acggtcggca gattacaaca tacgctttct tggacgacgg gtcttcatcc acacttcttg      2700
     aagctagcat tgcgtcggcc ctagacatca aagggccaat cgatggcttc tgtttgagtt      2760
     ggacagggaa tatatcgaga gaggaaaacg agtcacagcg tgtcagcatc gtgattggca      2820
     gtgaaggcaa gaagttcaaa ctccacaacg tgcgaacagt acaacatctc cgcttgccga      2880
     gtcaatctat gtgctacgaa gagttgcaac gttcctataa tcacttgaaa ggtttgccag      2940
     ttcgtagcta tacagatgca agtccaggaa tcatcatcgg aattgaacat gttcgactcc      3000
     ttacttcgct gagaatacgc gagggaagcg acaacgagcc agtagctgct aagacgcgcc      3060
     ttggttggtg tatcttcggg aagagttccg acagtggtaa tgtcatagaa cagttgaatc      3120
     ttcatctgca cggtgaatcc gcaaacagag aactacatca atggatgaag caattcttcg      3180
     ctgttgagga atccagtgtg acagtaaagc ctgaatctga agaagataaa cgggcgagga      3240
     agataatgga agcaacgact cgacgagtag aaggcgcgtt tgaaacggga ctattgtgga      3300
     agtttgacta catccgtttt ccagatagtt acccaatggc agtgcgacgg ctaatctcgt      3360
     tggagaagcg gttaggtaaa gatccgattc ttgaagcgaa ggtgaaagaa cagattgcac      3420
     actacgaagc caaaggatat gcacattgca ttacaccgga agaacttcag tttgctgatt      3480
     ctgataaggt ctggtattta ccattgggcg ttgtacagaa cccaaaaaag ccgaccaagg      3540
     tacggctgat ctgggatgca aaagctcgtg ctggaggagt ttcgtttaat gacatgttgc      3600
     tcaaaggtcc agatctcctt gttggcctga tggcagttct gttacgcttc agacaaagaa      3660
     acatcgccat tgttggtgat atcaaggaga tgtttcatca gatacgcatt cgtaatgaag      3720
     tcaaacagtc acaacgtttc ctcttcaggc gtaacccaga atcaaataca cagatctatg      3780
     tgatggatgt tgccactttc agggcaacct gttctcctag tctggcacag tacgtgaaaa      3840
     acgaaaatgc gaaggagttt gccgagacct atcctaggac gacaaaatca gtgaccgata      3900
     accactacgt tgacgatttc ttggacagcg tggataccga agaggaggcg gtaaaactaa      3960
     tcaacgaagt gaagtatatc cattctcaag cagggtttga aatccgtaat ttctgctcca      4020
     attctgttca agttttaaag agagtcggtg aatacgaagc gccaaataca gtttccatga      4080
     atttagataa gtctacagag tcagaaagag tattgggtct agtctggagg ccatcagagg      4140
     atgttttcac cttcgatctg agtagtatta aagaagagat cagaacgtta atcaccagtt      4200
     caacgatacc gactaaacgc caagttctgc gaactgtcat gtccttattt gatccattgg      4260
     gattgatttc ccattttgtc gtacatggca aaatcctcat gcaacagata tggagatccg      4320
     gtactgattg ggatgaacca atgtcggagg aattgcaaga taaatggatt agttggtgtc      4380
     agtatatgca gcgtctggac gtagtagcag taccccgttg tttcttcaag ggagtgaaca      4440
     gttcagcact cgacaatgta gaagcccatt tgttcgtgga tgcgagtgaa gtagcctgtg      4500
     gagcagttat gtatcttcgt tttctcgata acggcggcac ccgctgtgca cttgtggccg      4560
     ctaaaacgaa ggttgccccg ttgaaaccac tttccgtgcc acgcattgag ctacaatcag      4620
     cgatgatcgg aacaaggttg ttagaatcag tgttgacatc tctagacata aaaatcagta      4680
     agcgctatct ctggtctgat tcgtctactg ttctgtgttg gctgcgatcc gatagccgaa      4740
     gatatcatca accaagtggc ctttcgagtg ggggagattc tgatcacgac aagtgtcgat      4800
     gagtggcgct atgtgccttc caacctgaac gtggcggacg cggctacaaa gtggaaagac      4860
     ggaccaagct ttgaaccaaa taacccgtgg tataatgcac cagacttcct gtacaatcca      4920
     ccggaacaat ggcctaagga acattctcgg aaagtggaga cagatcttga actacgagca      4980
     gtatttcttt tccatggcag catgcctcaa ccgctgattg aagtttcgag attttctaaa      5040
     tggaatcgac tgctcagaac atcagcattt gttttgcggg cagtacaaag atttaaaggc      5100
     aagaaggtat ccaaatcaga agctttaaca caaaaggagt tgagtcatgc ggaaaatctt      5160
     ttgtggcgac agatacaaac ggaaatgttt ccggatgagt ttactatctt gcaacgcaat      5220
     ttatcgaagc ttgacaatcc agtatcaatt ccaaagtcta gtgcactata tcgactgtct      5280
     cccttcatgg acgaatccgg ggtcatccgc atgaacagca ggctcagttc agcccaatca      5340
     ctctctggag atatgaagta tcccatcata ctacagaaga agcatcctgc aacgtatctt      5400
     ttaggcgagg actaccaccg acgatttcta cacggaaacg gagagacagt ttgtaacgaa      5460
     atgcgacaaa gattttggat accaggcttg cgaaacctaa tccgtcaggt atcgaggcag      5520
     tgtatggtct gtcgagtcag aaaagctgtg ccataagcac ccatgatggc acctttacca      5580
     gcggcaagag ttacggcact cgttcgtcca tttacacaca ctggagtcga ctatttcgga      5640
     ccaatacaag tcaaacatgg acgcagttta ttgaaaagat gggtggcgtt gttcacgtgt      5700
     ctgactatac gtgccgtaca tgtggagttg gtgcatagtt tgtctacccc gtcgtgcata      5760
     atggcaataa gacggttcgt ggctcgccgt ggttctccag cagctttcta cagtgataat      5820
     ggcaccaact ttgtaggagc cagcaacctg ttagcgaagc agattcaaga tatccacgaa      5880
     gattgctctg tgacctttac aaattcggct accagttggg aattcaaccc gccgtcagcc      5940
     ccccatatgg gtggatcttg ggagcgtatg gtgcgctcag taaaaacggc tatggcagcg      6000
     atcgcagagc acccgcatca tccaagtgac gaagtgctgc agacagtggc cacagaagca      6060
     gaggcagtta taaactccag gccattgacc tacattccgc tagaggcagc ggaacaagag      6120
     gccttaacac caaatcatta tttacttctc ggagccaatg gtattagtca accagtaact      6180
     tcattgaata ccgttggaag cagtctacgg gacagttggc gtttagcgct atatttggtg      6240
     gatcagtttt ggagtcggtg ggtacgtgaa tacttgccca ctattacgag acgaaccaag      6300
     tggttcgagc cagtgaagcc gctagaaccg ggagatctcg tactcctcgt tgatgagggt      6360
     aagcggaatg gatggttaag aggtctggtt atgaacgtga ctaaggctga ggatggacaa      6420
     gttcggcgtg cagttgttca aacgaagaat ggtttggtga gtcggcctgc agtaaagtta      6480
     gctcctctag accttcggac atcggacggt ccggaactac acgggcgggg gga             6533
//
ID   BEL-884_AA-LTR repbase;    DNA;    INV; 632 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 25.10, Created)
DT   24-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-884_AA-I;
KW   BEL-884_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-632
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-632
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3013-3013 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 632 BP; 229 A; 95 C; 128 G; 180 T; 0 other;
     tgttacggca caagagggta tagacgtgag ttcagtaccg cccgcaactg tcattagcca        60
     gccgggtgag catagatgtc agctagcaaa cagcgtgtca acctgtcaca tggagcataa       120
     atagtaaaga aacgtgaagt accgaacact tattcttgcc cgtgaaattt ataatagtta       180
     agacacagag tgaattaaaa tttgaattta gttagtaaga cagtttttca atcagaattg       240
     atataaagtt gaagtgattt gttattggaa ctaggtaaat tgacagacgt gaacatttct       300
     atgctatgtg ctaataaaat caatttcagc tcaaatcgtt accgcagcga ttagtcagta       360
     cagatagtca gtagtcagaa aacagtattg attaaaagta agtaacacgt ttgactaaag       420
     gagaatcaca ttaaaaatta atttgttaaa tctaggttca tacagtcagt cagaagaaac       480
     ctgtttcgga taaggagaag aaaaggaaga aaacgaaaat gtaagatgaa tttgtattaa       540
     actgaattga aatttactga ttctaatata ttacagcttt gaagctgcat gattgctgct       600
     atcaggaccg tttttgaatt cctatccgaa ca                                     632
//
ID   BEL-885_AA-I repbase;    DNA;    INV; 5987 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 25.10, Created)
DT   26-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-885_;
KW   BEL-885_AA-I; BEL-885_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5987
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5987
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 5987 BP; 1802 A; 1322 C; 1475 G; 1384 T; 4 other;
     atctaaaaaa ttgatatcgg atttaacctc aaatacgatg gtaaaggcag gaaacttcac        60
     attaacaccc tgtggtgttt gttccgaaac atcggaaacc aacgaaggta tggtcgaatg       120
     tgatgcttgt gacctttggt ttcatttccg atgcgtggaa gtttcggaag agtccctcgc       180
     aggtctggaa aaatggttct gtccttctga accctgccag taagcaggag aggaaattct       240
     taaaaaaccg gatgatcgca aaaagggaag taggtcgaag ggatcgaagg cacaggctgc       300
     ggaagagtcg gacaaatcta gcgtcaagtt tgatcgccat tcaggctctt cgctggaaaa       360
     aagacttaaa gcattggaga aggaacaaag gatcaaggaa cgagaaatgg aggttgagcg       420
     aatattgagg gagaaacgga tcgaaatgga tcggattcta aaggaaaagc agctgaaaat       480
     agaaaacgaa ttgagggaga aggaaatgca gcttgaaaaa gagatgttgg agcaagcgct       540
     ccgtgacgag caggctcacg ctgatcgtat gcaacggatg cgagaatcgt atcaaaatgc       600
     gatcaagagt gtcaagcatg tttcgatgaa gtcgccgaat tccggcctta ccgatagcaa       660
     ctacgagaag acaaagctcg aaaaactgat tcctgatgca ggagaaggtc catcgcaagt       720
     taagaaaaat ttggacacac cgttgcgcaa tccaaacgtc ttggccagag cggtttcgga       780
     aaagcagcaa acgtcgataa ccggaaagca tcagcaaaat gtagagtttg aaggaagctc       840
     agaagaggat tatagttccg tcgaagaaac cagcaacgaa gaatctgagg acgacagcaa       900
     cagttccgag acgttatcag aaggaaagca ggaagaagaa tcggagaatg agttggaaga       960
     aacaacattg tctgtagaca agatgcgtcg gaagaaaatg aagaagccag agtcatacgg      1020
     gctggggcma acactgacaa gaccaaccaa ggcccagctg gcagcgcgga atggactttc      1080
     caagaagctc ccaaccttca gtgggaatcc cgaagaatgg ccactcttta twggmagcta      1140
     tgacgcctcc aatatagcgt gtggtttcaa tgatgtggag aatttggttc gcctacagga      1200
     aagcctgaaa ggctcagctt tggagagtgt tcggggacaa ctgttattgc ccaaatcagt      1260
     gccgaaggtt atcagcaaac tccggcaact cttcggscgc ccggagcaac tgctgcattg      1320
     ccacttggaa aaaagtcaag cggctggaac ccccgaaagc ggataaatta gagacattca      1380
     tcccattcgg aaatgtcgtg gaacaattat gcgaccacct tgaagccgcg gggttgaaag      1440
     aacacttggt caacccgctg ctcatccaag acctggtgga caaactccca gcaggtgaca      1500
     agcgagagtg ggtccgatat cgcagcaaga ggaaaactgt aacgctacga acattctcta      1560
     ccttcctatc aagaatcgta tcggaggcat gcgcggcaaa tgtgggcttc gaatataatc      1620
     ccgaacccaa gattaagcac ggacataccg gaaagggaag ggcttcggaa aaaggagcag      1680
     tctacacaca cagtgtgagt gaaagtccta cttgcaacga agagcagaag ctgaaaccgt      1740
     gtaaagcctg taagagaaca gatcatcgtc ttcgtttctg tcaggacttc aaatcaatga      1800
     acttagccga tcgcatggaa attgtagaga gagccaaact ttgcaatatc tgtcttaatg      1860
     atcacggtaa cgctccttgc aaattcaaaa ttcgttgtaa tttgggtgat tgtcgggaac      1920
     gacaccatcc gctgctccac ccgatcgaaa atgtggtcgt tataaacaca catatccgtt      1980
     catcgagctc catcatgttt cggatgattc ccgtaacttt gtactgcggg gataaatatg      2040
     tgactacgct ggcatttctt gataaagggt catcgattac tctagttgaa cgttcactta      2100
     ccgatcggct aaatgctaag ggagtaaagt ggccgctcac catcaaatgg accgctgata      2160
     ttaccaggga agaaccggat tccaaaatga tgaatttgtg gatctctggt gcaggcaaag      2220
     aggaaagact tccgcttcaa gcagcgcaaa ctgttgaaaa attgctgctt ccaaaacagt      2280
     ccctcgtttc ggctgcactt gccgctaagt atagccatct tcgtcatttg ccaattgaat      2340
     cgtattcaga tcagcaccct ggtttgctca taggtctgaa taatctccac accatagcac      2400
     ctctcgaagc taagattcgg aaaattggag aaccaatagc tgtgcgatcg aaacttggct      2460
     ggtcagttta cggtcctaac tcaagagaaa caaatagtgt agatacagtc ggacatcacc      2520
     tcggaatcag caatgaggac ctttacaatt tactgaagga ccattacgct ttagaggaat      2580
     cagccgtagc ggtagtgcaa gattccaatg aagaaaaacg agcacgagac atccttgaac      2640
     gaacaactgt tcgcgttggt gaccgtttcg aaacgggttt attgtggagg acagacgatc      2700
     acacgtttcc agatagtctt ccgatggccc gtcggaggct gaagcaatta gagcagagac      2760
     tcgaaaagtc tccggagctg tacgaaaggg tcagacaaca aatcgaagat tatcagcaaa      2820
     agggatatgc tcatctagca acctcgaagg aactgaagga aaccgatcct ctaaggagtt      2880
     ggtatctccc gttgaattac gttcaaaacc cgaaaaaacc cagcaaaatc cgtctagtat      2940
     gggatgctgc agctacagtt aatggtgtgt cccttaatag ccagctactt aaagggcctg      3000
     atatgctcac tcccctgaca gctgtactta gtctttttcg ggaacgtcgt atcgcctttg      3060
     gaggcgatat acgtgagatg tatcaccaac tacgcatacg ggaggctgac aagcaggcgc      3120
     agcgattcct tttcaggaaa acccctgaaa acatcgagcc tagcgtgtac atcatggatg      3180
     tagctacgtt tggatctacc agttcaccat gttcggctca atacgttaaa aatctcaacg      3240
     catcggagtt ttcagcaacg tacccagagg cagccgctgc catcgtcgac aagcactatg      3300
     tcgacgatta ctatgatagt gttgataccg tcgaagaagc gattcgtcga gccaaagaag      3360
     tccggttcat tcattccaaa gcaggcttcg agataagaaa ctgggtttcc aactctccca      3420
     aggtacttca aagtcttggg gagtcgaaac ctgtacaaga tgttcatttc aacgtcgaca      3480
     aaacaacgga aaacgaacga gtcttgggaa taatctggtg tccaaaacaa gataaattct      3540
     catttgctac cgatcatcgc ccggaactaa caccctttat ggacggcatt cggcgaccaa      3600
     caaaatggct ggttttgagc tgcgtgatgg gcttttttga cccgctagga cttttagcac      3660
     cattcactat tcacggaaaa acactcattc aagatctgtg gcgaacggga tgcggatggg      3720
     acgaagagat aaacgacgat gcgctgcaga agtggaatcg ttggacaggt cttctaaagc      3780
     aagtggcaga tattcgaatc cctcgctgct atatcggaga tgctctatcg tccgaaatcg      3840
     agtcgcttca gctacacatc ttcatggatg caagtgagca ggcttacggt tgcgttgctt      3900
     acttccggac agtgataggt ggccaaataa ggacttctct ggtgacttcc cgttcgaagg      3960
     tcgccccgct aaagcgtcaa tcgatccctc gccttgagct gatggcagca gttttgggat      4020
     cacgtttact acacacggtt caagctaatc actctcttcc aatacacaac tactttctct      4080
     ggtcggattc tcaaacggta ctcagttgga ttcgttctga ccagttgaaa ccagtttgtg      4140
     gcattccgca ttggtgaaat tcgggaacac accaacatct ccgattggcg ttggattccc      4200
     acaaaaacaa atattgctga tgtgctaaca aaatgggggc aagggcctcc gctagagtcc      4260
     aacagtgcgt ggttcgcagg accacaattt cttttggagt ccgaaaatcg ttggccagta      4320
     gcaccactcc cagcagttga taccaacgaa gaaatgcgtg catccgttct tcatcatgaa      4380
     gccataaacc ctaatccagt catcaatgta gactcaacaa atcgattaga tcgtctgctt      4440
     cgcagtacag cttatgtgat acgatttatc aggacctgtc gcaggaaaat tgctggtgat      4500
     tcaatcgttg tttctaaagc tactccaaac caagaaaatc tgctattggc acaaccaaaa      4560
     tctgttctac aaccgttaca acaggaagaa ctatgtgcaa ctgaatcaac cttgtggaaa      4620
     caggctcagc gcgatgtatt tgcggaggaa ttcaaggtac tagagaaaaa accaaaagcg      4680
     cgaaggagct cctgatcgaa tcaaaaagac aagttcacta tacaagatga atcccgttct      4740
     ggacagcgaa ggagtcatgc gagttggagg aaggctacag tattccgagt tcgctacgtt      4800
     cgacatgaaa catccaatca ttctacccaa agaacatgcg ataaccaact tgctgattct      4860
     acgatatcat gaaaaatttg ttcatgcgaa cagggaaact gtgtgtaacg aacttcgtca      4920
     gcgattttat attcccaagt tacgccaagc gattcgacaa gcagtgaaaa actgcatgtg      4980
     gtgtcgtgtt aaccgttgcc agccggtaac tcccatgatg gctcctttac cggtgcaaag      5040
     agttacgcca caacttcgtc cgtttagttc agttggtgtg gattacttgg gccccgtgga      5100
     agtattggta ggtagacgat gggaaaaaag atgggccgct ctctttgcct gcctagcggt      5160
     tcgagcagtt catcttaaag ttgtgcacgg tttaaccact caggcatgct taatggcaat      5220
     aagaaggttc atgtgtaaac gtgggacgcc agatgagttt ttttccgaca acggaactaa      5280
     ttttaaaggt gctagcaacg agttggcaaa gatagataga gaatgtgctg aagttatgac      5340
     gagccccact ctaaagtgga acttcattcc cccaaatacc ccacacatgg gcggtagttg      5400
     ggaacgaatg gtacgatcgg tcaaacaagc gttagaagtc ctcaacgacg gtcataaact      5460
     tactgatgaa gtcttgttta cttcgttatc tgaggcagag gacgcaatca acacccgtcc      5520
     attggtctac ttaccacagg aggcagcaga aattgaagca ataacaccaa atcattttct      5580
     tcgtggcatt gtgaagaatg ctgatttgaa ggtcgacggt tctgcggatt tcgcaaaaac      5640
     tctacgggac gtctacaaga gatcgcaata ccttgcagat caaatgtggc aacgttggtg      5700
     gaaggaatac ttaccaacca ttaactcacg tttaaaatgg gttgaagacc ggaagcagct      5760
     acgcgcaagc gatttagtgt tcatcgtgaa cgatggacac cggaaaaact ggactcgagg      5820
     gattgtccag gaagtgttcg aaggtaaaga tggcagagtt cggcaggcga gtgtgaggac      5880
     agctaatggt gtatgcaaaa ggtctgctgt caatctagca gttatagaaa taccatgtaa      5940
     atccggaatt ccggagtgtg aaccggaacc ggagttacgg gctgggg                    5987
//
ID   BEL-885_AA-LTR repbase;    DNA;    INV; 636 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 25.10, Created)
DT   26-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-885_AA-I;
KW   BEL-885_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-636
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-636
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3014-3014 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 636 BP; 219 A; 89 C; 132 G; 195 T; 1 other;
     tgtgcagaaa accatagggc agtcagcaac gttggcggtc tagataatag cgtagatcat        60
     tgattgttga aacttttgat aggtaggaca actggataaa aacaaaggtg gaagtgataa       120
     gccaacagta tacacagttc gtggtattaa ttgaaacagt agaaatctag aaatctagaa       180
     atattattaa aaagtgaatt cgagcacaac ctgagaatta aatattgtgt gaacgccatt       240
     cggtaattgt tagtagatat ttgttgagcg atgtaacatt atttcttgtg cgctacttgt       300
     ttcagggtat agatcgtgca tttaagctag ttgtttctac tagtgggaca aaataggatt       360
     gttgccttaa aattagccaa ttgttctctt aaagtaagta acatcaatac ttaattgtaa       420
     taatttctaa ttgaatcact ttattcaggg tgaaacatca actagcgtgc cttaccgaag       480
     ccattcgtag cacgagggga aataaaaact atcaattgta agtcctagtt taagtaattc       540
     aacaaatgtt gttaattgaa atttgaaatt aaagttttag ctgctgctaa ggggctgctc       600
     aaaaamggtg gcgaatttcc aaggtaaatc cgaata                                 636
//
ID   BEL-886_AA-I repbase;    DNA;    INV; 6338 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 25.10, Created)
DT   27-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-886_;
KW   BEL-886_AA-I; BEL-886_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6338
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6338
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6338 BP; 1765 A; 1623 C; 1552 G; 1398 T; 0 other;
     ttatataatt tcgtttattg gacgaattga gcattatgcc tagtcgtggt tgtatccgat        60
     caggcgtgaa gggggataaa ggcgtgcgca aaatgttaga tgaaagtagt gcggtcggtg       120
     gtcgaggtgc tggtagtggc gagattccag aggtattagt tgtggatgaa actctggagg       180
     gatatacgtg taagacgtgc aggagagcgg acaccaagga gatggtgcag tgcgataaat       240
     gcgacgggtg gttccatttc tcctgcgtag gcgtttctga agacattgcc gacaagagct       300
     gcagttgcac taactgcgtt accgcgacat gggttcagcg aactaaggca gcttcggaga       360
     acgaaaccaa gcgggacaat gacaacctag atcgcaaatc atctagaagc cagccaactg       420
     ggagcatcgc tacaagtacg cgcgccaatc ttgtgattcc tccagaagtt cacaaagcag       480
     cctccgagga tcagaatcgc gttaacatta cgcgaaaatc cacaacagaa gtagtgaccg       540
     gtcaaacaaa ggccaatcag cataagcagc agagggacga aggcaatctg aatgcagatc       600
     tttcggacgc cgcgaaagca ctatccgaag tttccttttc ttcgtcacag aagtcagcgg       660
     tcagtcgcgc aaagctacag ctgatgcggc tacaggagga aagagaattc cagcagcagc       720
     aagaagaacg acgaagaatt gccgaagaaa aagcagcaca agaacatcgc aagtacctag       780
     aagagaagta ccgattgctt gaagaagcgc taagcgaaaa aggatcacga aaaagtgaaa       840
     aaggatcgag aagccgtagt gaagcctcaa gccgagtgag cgaatgggtt cagagagcca       900
     gtcaggttca ccaaattgaa ccagaagtag atgatttacg caaggataat ctacaactat       960
     ctgtaggtca tgtgggacca tcgcacgcta ctgagcgctt cggacagcaa cgaattcgct      1020
     tcgaaccaag tacccaaact ggtttcggca gtcattctgg tcaacaattc aatcatccat      1080
     atcactcaac agcagcaacg gcaggacagc catcgcagtt ccgactgtcc aatcacttct      1140
     ctcagggaaa ggtgcctatg aataccgtcg actttccatt cgcatcgtca actaggcttc      1200
     cactcaattc cactaccttc gatggacagg tccaagctcc accggcctgt tctaccggtg      1260
     ttcgccaacg gaatcttcaa aacgatgttc acgcttccca aagatcgtat caagaggagt      1320
     ctcaggatga attccagctt tctcggtcgc aagtggcagc cagacaagca gtcccgaggg      1380
     atttgccaac cttttccgga gatcctgaag aatggcctat atttttgtcg atgttcaatc      1440
     gtacgactac gatgtgcggg tttactgagg aggagaatct agttcgcttg cagaagagcc      1500
     tgaaaggcaa ggcctatgat gcagtaaaga gccgtctgat gttccccgga aacattccag      1560
     gcattttgtc aaccctgaga atgctgtttg ggcaacccga agtcatcgta cagtcgctga      1620
     tcggaaaggt tagctcttta ccagccatta gggaagacaa actggattcg ctggttgatt      1680
     ttgccgtaca tgtgcaaaat ttctgtgcca ccgtagacgc ctgcggatta caggagtata      1740
     tgtacaacgt cacgttgctc catcagctgg tcaacaagtt gccaccatca ctcaaactaa      1800
     attgggcgca atatcgtcta acgatgccca ccgtcaacct ggcgatcttc agtggctgga      1860
     tttatgcctt ggcagaagct gcaagtgtcg tcacgtttcc gtcgtcggtg caacctgaaa      1920
     aatccggaaa tgaagctcgc ggatccaaga aaggaaatgc gtatctcaac gcacatggag      1980
     agaccccatc ttccgaagag agcgctttac tgaaggaacc ctcgacctta aatccagcgc      2040
     cgacgcagca tacctgccca atctgtaaag gcagctgcaa gttcgccgac aaatgtaagc      2100
     gcttcttgga gctttccaga gaatcacgtt gggctgttat aagagagttc ggcctgtgcc      2160
     gtacttgtct gcgggcgcac aagggaaact gcaacgccaa gccctgcggt aaaaatgggt      2220
     gtacctaccg gcaccatgag ctgctgcata acgattcgaa ggagagacct cagaacactg      2280
     cagcagcagt cgcaaccgaa aacgagagta agccaactgt tccaccttgc tccaacccaa      2340
     ccggatgcaa tacccatcgg tcagctacca gttcagtgct gtttcgctac ctcccagtag      2400
     tattgtacgg aaagacgact gtaatttgta cgcacgcctt cctggacgag ggctccgagc      2460
     tcaccttgct cgatcaagag attgctgatg ctttagagtt ggatggcacc gagcggccac      2520
     tatgcctgcg gtggaccgga ggaactgaac gttgtgaacc gaattctcga gcctacaatc      2580
     tccaaatcgc tggagccaag gaaggaagca agcggttcga ccttaacgat gtacgaactg      2640
     tgaaggacct aaagttaccg caacaaacgt tggacatgcc caaattctgc aaggaatatc      2700
     cacaccttcg agatttgccg atcgattcct acagggatat acggctacga attctgatcg      2760
     gaaccaagca cgcccacctc ggccttgtcc taaaaagccg agaaggagag tttgggcagc      2820
     cgattgcagt caaatcaagg ctgggatgga ctatctgtgg aggacaaagc actgaccatg      2880
     gaacaagtct gcatcattac agctttcaca tttgtccgtg taacaccgaa gcagacgaga      2940
     atcttcacca agcgatgaag gactacttct cccttgatag tctcggggtt accaaaccgg      3000
     acaactcgct gctatccgtc gaagatcaac ggtccatgat gttgcttcaa tcgcttactc      3060
     accgcctcga tgatcgttat gaatctggtt tgctctggcg atatgacgac gctcgtctac      3120
     cggatagccg atccatggca ctgcgacgat tccaatgcct gaagaagcga atggaaaaga      3180
     atccggagct gcagacgact ttacaagcaa aaatcgacga atacctagaa aatggctaca      3240
     taagattact cagcgagcaa gaaattaatc aggaagtgtc tcgccggtgg tatctaccag      3300
     tattccccgt aacaaatcca aacaaacctg gaaaggtacg gatagtatgg gatgcagcgg      3360
     ccagtgccca cggaacttca ctgaattcgg ctctcctcaa aggaccagat cttctgtgct      3420
     ccatccttac tattctgctc cagtttcgag aacgtcgtat cgcactcacc ggcgatatcc      3480
     gtgaaatgtt tcaccaggtg ttgatccgtg ccgaagatca attatgccaa tgtttctact      3540
     ggatgaacca gagtggggaa acccaagtat acgccatgca ggtgatgacc tttggagcat      3600
     gttgctcacc gaccactgcg caattcgtga aaaacatcaa tgccgatcga ttctatatgg      3660
     aatatccagc ggcgcatcaa gctattacta agtcccacta tgtggacgac atgcttgtca      3720
     gtgtggacac tgaagagcag gccatccagc tggccaagga cgtaaggcac atccaccagc      3780
     aaggcgggtt cgaaattcga aactggatca gcaactcgag aatggttctg gcagcgttgc      3840
     aaggggtaga catcgacgaa aaatgcctcg atctgtcctc cgaaatggcc acagaaaagg      3900
     ttttgggcat gtggtggaac acgacagatg acgccttcac ctataaagtg ggatggaacc      3960
     ggtacgatgc ggctctgttg ggtggtgaac gaaggccaac aaagcgagaa gttcttcgcg      4020
     tcttgatgac catcttcgat ccgctagggt taatttccca cttcctatcg tatcttaaga      4080
     ttctgctgca gcaaatatgg cgatccggca tacaatggga cgacgaaatt gatgacaatg      4140
     cctacaaaaa atggcttact tggttgaagg tgcttccacg cgtcgaacaa gtaaagattc      4200
     cccgctgtta caaccccaaa tacctcatca gcgaagctca cgaagtacag ctgcacacga      4260
     tggtggatgc tagtgaaaac gggacggccg ccgtttgtta tctccgcttc atccgagatg      4320
     gatttgcatc ctgctctatt gtcgcagcca aatgtcgagt agcgccgctt aagtttactt      4380
     cgataccacg actggaactc gaagcagccg taattggtgc tcggttatcg cattccgttc      4440
     aagaggctct ggctttcagt atccatcgaa aatggtactg gtctgattct agagacgtcc      4500
     tttgctggat taactcggac caccggcgct acagccaata tgttggtcac agaatcagcg      4560
     aaattctcga aacatcggag gcgcacgaat ggcggtgggt cccgggcaaa caaaatccag      4620
     ccgatgacgc tacaaagtgg aatagcccac cagaattgtc ctctcagaac aggtggttca      4680
     acggtgccga ctttctatgg cgccctgaag aggattggcc aaaaaacctc agccgtaaag      4740
     attccaccga catcgaacta cgcccatcac tcctagtaca ccacgctgct ccggaaccag      4800
     ttttccatgt aaacgacttc tcaacttggg agagacttcg ttcagttgtc gcttacgttc      4860
     accgattcac caacaactgt cgttgcaaaa gccgtggatc gccgatagcc acaggtccac      4920
     ttgaggcgaa gcagcttctc accgccgaac atttcctgat ccgactgtgt caatgggaat      4980
     cctatcccga cgagatggcg gcgctgcaaa atccacccca acgttccgaa accataataa      5040
     ccataccgaa atccagctct ctgtaccaac tgacaccttg gttggacgtt aacggaatca      5100
     tgcgcatgcg aacccgtatt gctgcatgtc actacgccac cgatgacgcc aagaacccaa      5160
     tcattctttc acaaaaacat cataccacct acttgatcgt agcgcactac caccgcaaat      5220
     atcatcacca taaccacgag acggtgatca acgaaattcg acagaaattt cgcatccctc      5280
     gcttgcgtgt ttgctatcag caagtgcgaa agaactgcca gcaatgcaag aaccagtgcg      5340
     cagctccaaa tccaccaatc atggctgacc ttccacccgc tcgcctggca gtcttttcac      5400
     gaccctttac gcatgttggt gttgattttt tcggaccaat cgaagtcgtc gtaggaagaa      5460
     gagtagagaa acgctggtgt atgctggcaa catgcctgac cgtccgagca atccacatag      5520
     aaatcgccca ttccctaagc acgagctcgt gccttatggc acttcgaaac ttcatagccc      5580
     gtcgcggcat cccacaaaag gtgtacagcg accgtggcac aaattttgtg ggcgctaatc      5640
     gcgaacttct acagattaat caaacaatca atcacgacga ttttttgaaa gaacttggga      5700
     atttaaaaat cgaatgggtc ttcaaccctc ctcttgcccc acacatgggc ggtagctggg      5760
     agaggttaat acgcaccgta aaaaacaacc tggccatggt gtgttcttca aaaagattga      5820
     ccgacgaagt tctcagaaat ctactggcag aggtcgagaa cgttgtaaac tctcggcctc      5880
     tcacccatgt gccgatagat gaagactcgg ccccagcact gacaccgaac cattttttgc      5940
     ttggttcatc cagtggatcg aagcctctct ccaatctcgt cgatagtaac gccgttctca      6000
     gacagaactg gttgacatcg caaattctgg ccaaccaata ttggaaacgc tggctgaccg      6060
     actatctgtc agaaataacc cggagaacca agtggtttca acgaaccaaa ccgattgaag      6120
     tcggagatgt ggtagttatc gcagatccaa agatgccgcg caactgttgg ccgaagggaa      6180
     aggtcatcgg caccagagtc agctcagatg gacaagttcg ttccgcaacg gtgaagacat      6240
     cgagcggcgt ctatgatcgc ccagtaacga agttagctgt tttggacgtt cggtgcgaca      6300
     gagagtaagc caatcatggt tggcatacct ggggggag                              6338
//
ID   BEL-886_AA-LTR repbase;    DNA;    INV; 939 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 25.10, Created)
DT   27-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-886_AA-I;
KW   BEL-886_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-939
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-939
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3015-3015 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 939 BP; 334 A; 169 C; 173 G; 263 T; 0 other;
     tgttagccgc tgcgcgtcca gcgcaccatc catccttgaa acaccactgg tgacggtgag        60
     taatgagtaa tcatcaacga ttcatctcat ggcgaacaat gtggtgagta atccgtgcga       120
     acgttgatag gtagcagaaa gaacaaaaac aaacgagata aggataattg aatctgaatt       180
     aagatagcat atcattcgag ttctacaatt aaactgctgt tttacccttt caattaaaac       240
     taatttctag aagaactagt gttaaatagt acatcgctga attggtaagc ttactaaaat       300
     gtgcatttaa cgatacgagt aaacttatat ctgatattgc ttttaaacag gatacccata       360
     acgatcggac aaattagaag agtagctagt aattaaggcc acgataggta agaaagaaaa       420
     tctccaccta tagtaattta gtgaaagtta cgttacacaa tgtattacag tgacagctag       480
     cgcatataga tcccgagaga gtgaggtacg aattcattca aagtactatc tcagaaggta       540
     agaaatcagg ccaatcaagt ctagtaacat ataattattg aacctaattc tccagtagga       600
     tcgtttcgta catccaatac gctcaattaa ttgccgaact tgaaagtgaa acgaagggac       660
     taaacgtaag ttgtagccat gtatcatatg cataagaaga tatctaaaac ctaaaagcat       720
     gtatcagggg ttcctaatac tgtacatgcg gagcatgaga taaatttact taaactttaa       780
     gaattcatta caaaaattat tgatagcttt ctgcaaatgt ctgaatttat atcttgcagg       840
     aaattatatt ctcccaatac caaaccgccc gagttttatt tgccttcggt cggagaataa       900
     catttcggaa atcattcccg ttgaaatcga gtttcaaca                              939
//
ID   BEL-887_AA-I repbase;    DNA;    INV; 5985 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 25.10, Created)
DT   28-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-887_;
KW   BEL-887_AA-I; BEL-887_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5985
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5985
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2984-2984 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 5985 BP; 1962 A; 1196 C; 1341 G; 1486 T; 0 other;
     ttttggtcct tcgaaccgga ttgatcattt ttcacatcgg aaaggtaaat taattgtaac        60
     ttttagcttt tcaccaaata ggtatgattg attgaatata agtgtccaac acccgggttg       120
     gaaatcatcg acgcttgggt cgatgagtgt aaccggatcc aattgcgagg attggaatta       180
     cgcaaaacga cgcttgggtc gtgctaccgg atttttttca acacgagggt tgaaataaaa       240
     ccactaaaac agaacgacgc ttgggtcgtg ctaccggatt tcaacacgag ggttgaaata       300
     aaacagaacg acgcttgggt cgttataccg gatttcaaca cgtgggttga aataaaacag       360
     aacggcataa gactgccacc ggttcccaac acgtgggttg gagtgaaaaa atgattttca       420
     aattagcgaa ttgtgttacg caaccaaaat aatccaacac gagggttgga atcagtcagt       480
     caaagggtta agaattgtac atgaaaagcg atatgaattc taacacacgg gttggaataa       540
     tttacaaaca gacctcgagt ttgcattgag gttaagtttg gcacacgggc caagagacac       600
     atgtcttgac ttatggttcg gaaaaatctt aacggtatta aatattcggt gacattgaac       660
     tgaaaatacg gaaatagagt aaaaagaaac aagacacaat tctagcgaga atctattatt       720
     ctatttcaac tactttctta acagatcatg gatacagccg aaaatccgca ggttattgaa       780
     ggcgaggagc gtgaggagga gattcctcag gataaaccag tatatgccat attacagtca       840
     gatcttgata gggcagtagt tcagcgaaat catgcagtca cgcgcatctc tcagatcatt       900
     gagacagctg cagtgtttga aagggaagcg tcccttttgg aaatcagaag agacatgctt       960
     aaagattgct acaaaacgta cgaccagatg cagagtacgc ttgagcaatg gattccagat      1020
     gaagttgaaa atcgaacaga agtcgaggtg aagtatttaa cgggcttgac gatgtttgaa      1080
     aaaatgattt gcggcaaaag aatccaaggc gccagtgttt tcaacagaga atcagtgaga      1140
     cttccaacag ttgatcttcc ggtttttagt ggctcaggag agaactggct ggaatggatt      1200
     gataaataca attcattgat acaccaaaga actactcttc caaccatcca gaaattcgaa      1260
     tacctcaaac tgtctttacg aggagtagct ctcggactca tcgactcatt gccaaccact      1320
     gaaacaaact acgcgatagc ctacgatctg ctggtgcagc ggtacaacaa cccaaagctt      1380
     ctaatacaaa agcacacccg cgaactattt gagctgaagg cagttgagat ggagtcagca      1440
     acagccttgc gagatttatt cgattcggct cgaaaacatc tacggtgcct gcaaattttg      1500
     gagcaacctg tggaatcttg ggacgccatt ctgatacacc taatggctaa taaactggat      1560
     tcagaaactc gtaaagaatg ggagtcatca gcctcaggaa caacgcaacc aagttacaag      1620
     caactggaga aattcgtgaa cgagagatgc catgttttgg acgcaatacc atcaaaatcc      1680
     cgacaagttt tagaaccacc accagcgaaa cgcctaagac ccgaaattcg cgctttgaca      1740
     gtgaatcgac gaaacgaaac ttacggatgt gttgcctgcg gcagggatca cgcactgtcc      1800
     agttgccaga aattcagcgc taaatcaatc gacgagaaac tacaaatggt aaaacggttt      1860
     gccctatgtt tcaactgttt gagaacaaac cacacagcag agcaatgccg gagtcgagga      1920
     tgtcttaaat gtgatagaag acaccataca tcgattcatc gtggaaatca aaccaacaac      1980
     aacagcttca acaataatcg taaagttcag atggagaaca agcgtgagta actcagtaac      2040
     actctgtaaa tgacatgtat attttttcat tccaataaat tattacagca gctacagatg      2100
     tattccatca atcgactctg aaaactctgt tacccactgc gtcggtcttg gtacgggatt      2160
     caaatggttc acccatttct tgtcgagcat tattggactc agggtcgcag tccaattttg      2220
     taacaaaagc ttttgtaaca aggttgggag gtcatattgg ttcagcccat gtaaatgtag      2280
     tcgggtttgg ccaacaagtg caaccagtaa tgggtaagac gtctatcttc ttcaaagcca      2340
     gaacctcatc ctactgcaaa actatattat ctttggtaac cgagacaata actgggccaa      2400
     tacccgaaca agatgtgaac ttaaatggtt gggacttgag cgacataaca ttggctgatc      2460
     cggaatttca cttgagtcgt cctgtggata tgcttctggg agtatcggta atgtttgaca      2520
     tactgcgaaa tggaaacatg gatatcggta attataaaaa taatgctcat atattttgtg      2580
     caataacgaa gttatatcta cctaccaacc aggtgaacaa ttaccgcttg tacagaatac      2640
     ggcgttggga tggattgttg gaggtaacat aaccagaatg gacttaggtg aaagtctgaa      2700
     ccattttatg catgaaaaaa ctgtcaacct cacagtaaaa gaatggtcag aggaagaaac      2760
     catctgtgaa caactgtttg tggatacgac cagacgaaat gaagatggta gatttgtggt      2820
     gagactaccc acaaaagtat gtgttgaaca gctgggggaa tccaagacct tagcgctgga      2880
     taagctgctc agattggaga aacgattcga gaaaaatagt cagctgcgta ccgattacaa      2940
     caacttcatg gaggactatt tagcgtcagg acatatggag aaagtagaag agaatttgag      3000
     cagtgataac ccagtttttt actttccaca tcacccagta cttagacctg acaacattac      3060
     caccaaattg agaacagtgt ttaacggatc agcccacaca tcaacaggtc tatcgttgaa      3120
     tgatgttctg atgagcgggc ctacaataca gcaagatctg ttcaacattc tcctgcggtt      3180
     ccggtgccat agatatgcaa tgacagcaga catcaaaaaa atgtttaggc aaattttgat      3240
     ccacgatagt gatcgtcaac tgcaacttat actatggagg ttttctccag aagaggctgt      3300
     cgtcacgtac cgcctaaata ccgttacgta tggaacatgc tcggctccct ttgctgcggc      3360
     acgctgccta agacagctta gtctcgaata tgaggatcaa tacccgcata ctagccaagt      3420
     aataattatg gacttttaca tggatgatgt gctaactgga gacgacgaac tagaaaagct      3480
     aatacgaacg aaggaagagc taagcacggt tctgcagagt gcaggattcg agctacataa      3540
     atggaaggct aacgacccgt ccatcgtacc ggaggatgaa agtacttctg cagttaagat      3600
     tctgggaatg cagtgggaaa caagaaatga tatgttcggg tttaaggttg atgtaaacgt      3660
     gaatgcaaaa ataaccaagc gaaacgtctt gtcagaagtg cagaaaattt ttgatcctct      3720
     aggagtcatc agtcccattg ttttgcatgg aaaattaata atgcaggaaa tatggtcagc      3780
     aaaactagat tgggaccaaa aactcccaga aaagattgaa aaagaatgga tatggttctg      3840
     caagcaagtt gatgcaatcc aacatgtatc gtttcctaga cacgtaccaa gcaagggtac      3900
     cttagtggaa ctgcatggct tttcagacgc agccaaacgt gcgtacgggg cggttattta      3960
     tgttaggact gtttgcgcag aaggagtcta tgtcagcttg ctctgttcta agtccaggat      4020
     cgcaccgtgc agtgaaaaag ctaataaaga agatataact atcccgcgca tggaactaag      4080
     agcagctact ttgctagtag aactaatggc aaaggtcaga gaagcattat cagttcaaat      4140
     acatggaatc tattattgga ctgactcgat ggtcacaata gactggatta acaatccaaa      4200
     tagaaaaagg ccaacgttcg ttagcaaccg tgtaaaaaaa atcaacgaga tgtctccaat      4260
     tgaaaattgg aatcatgtac ggtcaaatga taatccagcg gacctcatat ctaggggaac      4320
     gtcgacacta aaattgtccg atagctcgat ttggtggaac ggacctggtt tccttagaga      4380
     tcgcgatagt ccatggagta atgtctcaat taaaacattg gtgaatcaaa atcagccaca      4440
     acgatccgca aagaaatgtc ctcaagacat acaggagtat tcacttctcg atcgtttttc      4500
     caaactcaaa aagctgcaga gagtaacagc atactgttta cgattcagaa ggaattgtaa      4560
     aactaaagaa caagaaagat caaaaggttt gctgacgata caggagcttg aagatgcaca      4620
     gttgtgtctt acaagaatgg cacaaaataa aatgtttgcc gctgaaatac agctgttaca      4680
     aaagaacaaa cctttgccta gttccagctc tcttataact cttcaaccat ttctagatga      4740
     tcgccaggtt cttcgcgttg gtggaaggat acaagctgca ggagtgagct ttgatcaaca      4800
     gcacccaata attttgtcag ctaaatgcaa acttgcacaa cttctggcag ttcaattgca      4860
     tgtggaaaat ttgcacgtgg gtagtcaagg tcttctctat acgatgagga tgaaatattg      4920
     gcctatacac ggtcgcaatc tcacacgtcg agtggttcat cagtgcatga actgctttcg      4980
     taacaaacca aaaccaataa gtcagatcat gggacagctt ccgattgaaa gagtaaaccc      5040
     aggaagacca tttgaaacat gtggaataga ctttggtggg ccaataaccg ccaaagaagt      5100
     tttcgtcagg actcaaaaaa cgcataaaat ctattttgct ttattcattt gcctcagaac      5160
     tcgagcggtt catttagaat tagtaagcgg actctcaacg acagatttca ttgctgctct      5220
     taggcgattt gcaggtcaac gaggatgggc caaaacgatt tactgtgaca atgcaacaaa      5280
     cttcgtgggg tcaaaaaatg aaatcaaggc attagccgaa agtttcaact atcaagtcgc      5340
     accggacatt caagaatttt gtaaaacaca aggagtggag tggaaattta tacctccacg      5400
     atcaccagca tttggcggga tatgggaagc aggaataaaa agtgtgaagc agcacatacg      5460
     gcgggttctc ggtcccacta ttccaaccta cgaagaaatg ctgacactac tcaagcaaat      5520
     agaaggttgt ttgaattcaa ggccaatttc acccatgtca tcggacccac gtgacccaaa      5580
     tccgttaaca cctggacatt ttctagttgg aggtccaata aactcaccac cggatcgaaa      5640
     ttacgctgaa ctcaagtcca atcggttaac tcgttatgaa cagattcaaa aaagtcttca      5700
     aagtttctgg gaacggtgga gactagaata tctcaacact atgcagcaaa ggacgaaaaa      5760
     aatgtgcagt acggaaccag atttgttggt gggacagtta tgtcttatca aagaagataa      5820
     tctgccaccc tatacatgga tcacaggtcg tgttattaag gttcatcccg gaccggatgg      5880
     acgtgtcagg gttgcaacgt taatgacaac aaagggtgaa ctcaaaagat ctattgctaa      5940
     gttgtgtctg ttaccatttg aagggaataa tggtgagggg gagca                      5985
//
ID   BEL-887_AA-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 25.10, Created)
DT   28-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-887_AA-I;
KW   BEL-887_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-270
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-270
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3016-3016 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 270 BP; 92 A; 65 C; 41 G; 72 T; 0 other;
     tgttgaggat tgaacgcttc acagttaata aatgtataac cacaaacaca ttatctctat        60
     gtatactact cttattagcc atgatcagaa taatattgca gaactgcata aacacactcg       120
     cgacagtggc actctatgta caatgattct accatcaaac ccaagccagg taatgcgatc       180
     tagtaggcgg cgataattca aatcttatct tcactcactt tttccacaac cgcgaaccag       240
     agtgcaagga atcttcaatc aactcgaaca                                        270
//
ID   BEL-888_AA-I repbase;    DNA;    INV; 7249 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 25.10, Created)
DT   28-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-888_;
KW   BEL-888_AA-I; BEL-888_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7249
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7249
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 7249 BP; 2136 A; 1692 C; 1826 G; 1595 T; 0 other;
     aaatcttcaa agaattcgcg gtgaagttta gacgtttgca cgttttataa caaacattct        60
     gctgaagaat gaatcccaca gcgaaccatt gtataatgtg tgatcggcct aacaatgccg       120
     acaacttagt gcagtgcgat cgatgcgatg gttatgtgca cttttcctgc gcggatgtgg       180
     gcgattcgat tgccgaccca agtcggagtt tcacctgtgc gaggtgcatc gaaaacgacg       240
     aagctataac tgtttactca cacagaacta gtaaatctca ttcgacatct accagtagcc       300
     acagtgaggc ccggctgaca ctcaagctcc agcaactaga gtccgagaag caaaaccgtt       360
     taaaacagct tgaagatgcg gagagatttc tgagattgag acgagaagtt gaagccgatt       420
     tcgctcagca aagattcgca gccctcgaag ctcagctgca agaagaggaa gagaaccgct       480
     ctacacgaag cagagcgagc tccagggtaa gttccagagt aattcgtgct aataccagaa       540
     agtggattgg atccaccgac ccggacaagg gagtagccac tgacgtcaac ttgcttccgg       600
     gtggcatcga tgcagcatcc ggagaacctg cccagttggg acaagtagat cccatgtcgg       660
     caagtcttgg ggacggttct ttccccacga acgtcatagt tggagaagaa ggattacgat       720
     ccgaagcagt agtttacgaa tccatatgca gcgttaatat ccagagtgag atgccagaga       780
     atccaatcaa cacgacaccg ggtgcacaga ggaccagttc tcaggcgacg acgaacgtag       840
     tacacagtca aatgcagaat ccgacgctta catcgaccga ggttagttct gctgtccagc       900
     cgaatttgta taccattcgc actggtgatg tccatgccgg tgcatgcagt agtgccgtta       960
     aatctatgag cacccaggtg agcgatagta ttagcgtctc aaatgtaaga ttaaaaccga      1020
     tttccgaaag cgttcaaaca agtacgccga aacaacaaac taaaaatgta tccgaccctt      1080
     tgattcagct aggagccaga ttcagggaca acaatataac tcagtcagta tatcagaatc      1140
     aggtatccca acaccgtctt ccctgtagag tccaacaaat aaatgaaccg ctctcactgt      1200
     caagtgtatc gaaacaatta gggccagtgc agtggcataa gtcaagtttg tcaaaagtga      1260
     aaccaaatcc tgggtatcag ctcgaagtga atacgtttga gtgtggtccg ccgacacaac      1320
     atgagcagca gtcgtttgca aggagaaatt cgccaaaact tcagcatccg tcgcagcagc      1380
     agcagcaatt tgtcggaagg agcgactcgg gcccaccgtc gcagcagcca ttcgttggag      1440
     gaaatccgtt gcagcagcag cagtttgttg gaaggagatc aacagaagat gggtcgatgt      1500
     cgcagcagca gtttaccgga aagagcacgt tacaatgcga accaccgcag cagcatccgt      1560
     cgcagcagca gcagcaattt gtcggaagga gcgactcggg cccgccgtcg cagcagccat      1620
     tcgttggagg aaatccgttg cagcagcagc agtttgttgg aaggagatca acagaagatg      1680
     ggtcgatgtc gcagcagcag tttaccggaa agagcacgtt acaatgcgaa ccaccgcagc      1740
     agcatccgtc gcagcagcag cagcaatttg tcggaaggag cgactcgggc ccgccgtcgc      1800
     agcagccatt cgttggagga aatccgttgc agcagcagca gtttgttgga aggagatcaa      1860
     cagaagatgg gtcgatgtcg cagcagcagt ttacaggaag gagcacgtta caatgcggac      1920
     caccgcagca gcagcttgcg aatccacctg tatcgctagc aacgcagaga ctgatgcata      1980
     cttcaaagcc aaatacattc caatcaacag aaagagtccc aatacctcct ggttttgaaa      2040
     gctttgcatt caacccatta gcctattctc aacagttgcg gcattcgaca cttcagcctg      2100
     aaacggaaca gttatgccaa gcgcaaccca cgaacactct cgggcatcaa cagaatcaag      2160
     tcaccagttc atccgcttca gtaccctctc ttgaatctca acggtattct tcgtcacttc      2220
     cggtagcagc tcaaatacct cctgtagctc atcgtacatc cgagtcgcag tgcagacgag      2280
     gaggaccatc agcagagcag ttggctgcgc gtcaagtcat cccaaaggag ttgccaacgt      2340
     tctccggaga cccacaagac tggccgcttt ttcgcagctc cttcaataac tcaaccgaag      2400
     cttgtggata caacgatgct gagaatttag ctagactcca aaaatgtctc cgcggccatg      2460
     cccttgatag tgttcgcagt cgtctactga taccagagtc tgttccttac gtaatgtcta      2520
     tgctagaacg cctctatggc agacccgagg ttataatcca ttcgctgttg aggcggatgc      2580
     gcgaaatacc ctctcccagg ggcgacgatc tcagaacctt gatcaagttt gggatgggcg      2640
     tagggaattt agtggaacac atgatccttg caaaccagcg acagcacatt agcaacccaa      2700
     tgctattgca ggagatggtg gatagactac caccaaacct gaagttgcaa tgggcatcct      2760
     acaagagaaa ttttcagatt gttgacttgg cgacattcaa ggatttcatg atggatttgg      2820
     taacgatggc tagtgatgtg actcttaatg tggatctcgt acagcacacc acggggagac      2880
     tggagaaacc taagaaggag aagttttcga cggagaaatt gttcgtacac cagcaaaccc      2940
     caacggctcc tgaactagaa accgtcaacc ttgtccgtgc ggagaaacca gctacctcga      3000
     gtattaaacc atgtctacac tgctgtaaaa tagatcaccg aattgcggaa tgtcctgaat      3060
     ttcgaaagct gaatttagat gaacgttgga aagtgatgag acaaaaggga ctctgtcgaa      3120
     tatgtctgat tcctcaccgc acttggccat gccgctcaaa acaagaatgt ggaatcgaag      3180
     attgtcgtat gcgtcatcac cccttgctac acaccaggaa agctgagagg aatgtacctt      3240
     caaactcgtc atctgttccc agaaatgttc ctcatcagca tcatcacata gcaacatctt      3300
     acgctttact acgatatcta ccagttacgc tatacggaaa cggtaaaagc gtagatgtgt      3360
     atgcgtttct agacgatggc tcttcgtcga ctatgttaga agctgagata gcacacatgc      3420
     tcggggtaga aggacccaac gagcctctat gcttgggatg gacgggagat gttacaagga      3480
     tcgagaagga atcacaacga atcgaaataa ctgtgtctgg aacaaatact gaaaaatgct      3540
     tcccgttgaa ggcaaaaacg gtgggccaac taaaactgcc gagtcaaacc gttaattatg      3600
     aagaactctg tgagactcac ccccatttga aaaagttacc attgaccagt tatgtcgatg      3660
     cctcacctcg tctactgatc ggtgtagaca acgctcgatt gattagtacg ctcaaaaatc      3720
     gagagtgcgg aaccggagaa ttgattgcat ctaaaaccag gctcggttgg tgcatttatg      3780
     gaacgcacgt ccgagataag cggttcgtag aatacatcaa cgctcacatg gaacataacg      3840
     aaaaggagga agggctaacc gagttgttca ggcagttctt ggcagtagaa gaggctagca      3900
     tcaaacagaa tcctcaatcg gaagaagaca agcgagcttt gaagatactc caggaaacaa      3960
     cgcgacgggt cggccggagg tttgaaacag ggctgctttg gaaatatgac gaaccttgtc      4020
     tacccaacag tttccctatg gcaattcgtc gaatggaagc tctggagaga aggttgagga      4080
     aggataccta tctggacaaa caggtgcgga gacaaattga ggattatgtc gaaaaggggt      4140
     atgcccaccg cattacggca ccagaactgg agtctacaga accgggacgt gtttggtatc      4200
     ttccactggg ggtcgtacga aatcaacgga agccagaaaa ggttcggttg atctgggacg      4260
     cagcggcacg cgttgagggc gtgtctctca atgatagaat gcttaaagga ccagacctac      4320
     taacagcatt gcctactgtc ttactgcgtt tccgacagaa acaaatagcc tttagtggag      4380
     atattaagga aatgtttcac cagtttctga tccgaccgag agaccgacaa tcgcagagat      4440
     ttgtattcag ggaacgggca gatcagccac ttcaaatctt tgttatggat gttgccacgt      4500
     ttggagcagc atgctcgccg tctattgcgc aatacttgaa aaataagaat gcagaggagc      4560
     acgcggtaca atatcctgaa gcggcaaggg ccataataga aaaccattat gtcgatgact      4620
     atctggacag cgtagacacg acagaagaag cggtgaaatt aatagaggaa gtgaagtacg      4680
     tgcattccat ggctggaatg aacattagaa acttttcgtc caattccacc gaggtactag      4740
     agcgcatagt agagactaat ggaaatcaac agaaagcact aacaccggag gcgaacgtag      4800
     agagagtact aggtatgatc tggcggccat ctgaggatat tttcagcttc gagctccatt      4860
     tgaaagaaga gattcttgaa atcgtcgaaa aggatgaagc tccaactaaa cgccaagtgc      4920
     ttcgtacgat tatatccatt tttgatccgc taggattgat cgtgcattac actgtgcatg      4980
     gaaaaatcat catgcagcgg atttggagga ctggagcaga ttgggacgaa gcagttaccg      5040
     gacaaatcct ggaagattgg aaaagatgga gcagcttact ggaggaaata agtgaagttc      5100
     gtgttccaag gcattttttc cttagcggtg gagcaacgcc gagctgtgag ggaatccatg      5160
     tttttgtcga tgcaagcgag gaagcgtacg cctgcgtagc ataccttcga tatacgtacg      5220
     gcgaaacctc gcgatgtaca ttaatagcag caagaacgaa ggtagcgccc ttaaaaccgc      5280
     tttctatacc acggttggag ctgcaagcgg ctcttcttgg agcgagattg ttggacagca      5340
     tcctcaagtc attaacaata cctatagctg ttcgatactt atggtcagac tcaacaaccg      5400
     tgcttgcttg gctgaggtcc gaaaccagac gctatcacca gtttgtcgga ttccgaatag      5460
     gagaaatttt aagcacaacc actgtagatg aatggcgcaa ggttccgtcc aaggtaaatg      5520
     tggctgatca agcgaccaag tggagagatg gacctagctt caatcccgaa gactggtggt      5580
     acacaggacc gagttttcta cgacaacctg gcaataattg gttgatcgag aatgccgaaa      5640
     cgtttacaac gacggaagat ctacgtaacg tatttcttca tcaccgtgta atgccagatc      5700
     cactcattga tgttgaccgg ttctctaaat gggcacggct gcacagagcg gcaagctacg      5760
     tagtacgggc ggtcaagctt tttctaggat tgacagcaaa cggtctggta acacagcagg      5820
     aattgcagaa ggccgaattc ctgatatttc gacaagttca gatgcaggaa tatccagacg      5880
     aatatgctac gcttacttac aacaagaaca atccagataa ggatgcgaag caaatctgca      5940
     agtctagtac tctgttcaaa atgtctccaa tgctagatga ggatggtgtg atcaggatga      6000
     acagtcgtat aatagcggcg ccaagggtaa ctaaggatgc gaagtacccg attcttcttc      6060
     caaaagatca tcgggtaacg aagttattga ttgaaaatta ccacgaacgc tttcttcatg      6120
     gaaacaacga gactgttctc aacgaattac ggcagcgctt cagaattcca cagcttcgta      6180
     cagttatcgc gaaaataagt aagcagtgtc aacattgtcg aatatggaag gcatctccgc      6240
     agacaccgat tatggctcca ttaccagaaa tccggctaac cgcattcata aggccattca      6300
     cacacactgg agtggattac tttggtccaa ttctagtgaa gcaaggacgc agctcaatca      6360
     aacgttggat cgcactgttt acgtgcctgt cagtcagggc agtccacctc gaggttgttc      6420
     acggcctgtc tacacaatcg tgtgtcatgg caatacgaag gtttgtggcg cgaagaggct      6480
     caccagcaac gttctgttca gataatggaa ctaactttat tggagccagc aacctactga      6540
     aaacacaact tcggacgatc aataacgact gtgctctgac attcacgaac tctcacacga      6600
     gatggctgtt caaccctcct ctagcacccc acatgggagg atcatgggag cgcatggtaa      6660
     ggtctgttaa gacagctatg caagcaatcg cggaccatcc acggcaccca agcgacgagg      6720
     tcctcgaaac aataacggtt gaagcggaat cgatcgtcaa ctcaagaccg cttacgtata      6780
     tcccactgga caatacggaa caggaggctc tatcacctaa ccatttcctg ctctatggaa      6840
     cccagggcat caaccaacca ggtcgcgaca tgctggtgga caccacgacc ttgagggaca      6900
     gctggaagct ggcgcagcac ttggtagata cgttctggaa gcgctgggta catgaatatc      6960
     tacccacact cacgcgacgt acaaagtggt tccggccagt aaggccgata aaaccaggcg      7020
     atctggtaat cgtcgtagag gaaggacgac ggaatggttg gctgcgagga cgtgttgtgg      7080
     aggtcgtaaa gggacgagac ggtcaagttc gaaaagcaat ggtgaagacg tcgaagggta      7140
     tcatcaaccg acctgcgacg aaattggcac tattggaagt gcaagaagca gttcgtggac      7200
     cagaagcaga aaacggtcgg agcataccga agctacacgg ggtggagga                  7249
//
ID   BEL-888_AA-LTR repbase;    DNA;    INV; 543 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 25.10, Created)
DT   28-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-888_AA-I;
KW   BEL-888_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-543
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-543
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3017-3017 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 543 BP; 186 A; 100 C; 106 G; 151 T; 0 other;
     tgttggcgaa cccactgtgc aggtaacgcc agccgatgag tgagcttcag atacgctcca        60
     atcgggaaaa aagtgaagtt tcgtaatagc tgacagctat tctcgacaaa cgtcactgag       120
     atgggtagga cgaggaggtg atcaatttgt gagaagagca taaggcagaa cgaagctatt       180
     attataagca gcaggttgca aactacaata gcaaattacc ataacatcat cattacttgt       240
     gaatttgaac ctatttttgc cactagttgg aagaattacg tgaattgtag gtagtactga       300
     attattatta caccatgcat aaatttctga atgtgaattt tttaatcaga tcaaagaaca       360
     caagcatacc cacttcaacc gaatagtttg gttagttcga gaaatacacc gaattgtaag       420
     ttgtatcacc catttgtatg aaactaaagc taacttatat aaataaattc cagctttgaa       480
     gcttctctcg atgctaccaa agaggtgtta tactctattc caaacgaaga tttcccgaaa       540
     aca                                                                     543
//
ID   BEL-889_AA-I repbase;    DNA;    INV; 6606 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 25.10, Created)
DT   31-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-889_;
KW   BEL-889_AA-I; BEL-889_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6606
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6606
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (31-DEC-2018).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6606 BP; 1868 A; 1438 C; 1527 G; 1772 T; 1 other;
     ttaaatggtc cttcgagccg gatccgaaga ctctccggaa gaacacattg tggaccaagc        60
     ggcatcttca caaaccggga caatagccat tgtctgaaca aaggatcgtc atcccaagcc       120
     gacgaacaat tggttacgct ctccattgtg gatcgatata aaaggatttt tctggataca       180
     aagcaccttg gagctggaat tggacgtttc tttggatgtt gcgttggacg ttgactggca       240
     taagcggact gggacactaa ccccgcatca aaccctgttt tcacaggtaa gctagaatag       300
     attagtgtat gtctggccga agccatggtt tcttttatct aacacctgca tttcgacgtt       360
     ctctccattg tgcttttgaa cggtagaggc agccgccgtt caaccctcaa caagacccac       420
     atcaagaaat caaccataca agagaaggga tactggtgtt cacaacaacg aggtcgttga       480
     ccgtatcgtc ataacaaccc tacgtttttt ggcatggaca tagtcgcatg aagaggcagc       540
     atgatttgtt acccggttgg gtgagtgcta tttagaatag tgtattgccg aagctagcaa       600
     atagatattg catgttttta attaaattta aacctcttcg acacttattt ggccacgaat       660
     ccctgcatac gagaactgtt cgttagaaca agtccgcttt ctgcagtttg gttcctcttg       720
     gatatttgga tgcttagctc gttggactag cctagctgtt cttctcacgg gtgagttaga       780
     acggtatatg tcctccgaag caaaggtttt tggaaactac atggattttc tcttcctccc       840
     cctcattttt tggtgaattt gagctggcgt ttgtgwatgc tgattgattg aacgagaact       900
     gcgttgtttt atggtagcct tcttcagtct caaaggtgag atacatggta tatggcctgc       960
     cgaggcctag gacgacagat tttacatagt gtaccctcct ttcccacaac taaatcgatc      1020
     gcgagcactt ctacgagtct aagacatcac gctgtttcta ctggatcgct gagtttgtca      1080
     ttggagtttc ttcagtttgg cgtcaaccta ctgttgcaaa ggtcagttaa gacagtatat      1140
     gtccgccgaa gctaggcttt tcggaatact acaccagcat ttccatacat ttaccggtac      1200
     accgtgacgt aacatcatca tgccgtcgac caagagctcc ccaacattga aggcattgaa      1260
     ggctcaactg aaggacatcc agtcatctct ccatgacata tctcgtttcg tggaacagtt      1320
     tagggaggaa accagtacca ccgaaatagc gttacgttta gatagagttg acaaattgtg      1380
     ggaaaggtat tctgaaactt tagtgcttgt aaggggccat gcacagttcg aagatgaaga      1440
     cgacgtatac gacaaggaaa ggcaggcaat tagtgatcgt tattatgaag tcaaggcatt      1500
     tctcctcgat aagtcacgag agcgtcgtcc atcacgagaa cacgagcaat catttcgcga      1560
     tacttctatg tttggaggat tggatcacgt gcggcttcct caaattaagc tgcaaacttt      1620
     caatggctct gtagacgact ggttaagttt cagggatctt tttacatctc tcattcatac      1680
     aaaggcggaa cttcctgagg ttgacaagtt tcactacctt aaaggatgtc tacaagggga      1740
     accaaagaac ttaatcgatc ctttacccct caccgaagca aattaccaag tggcttggaa      1800
     tttacttttg aaaaggtatg ataacagtaa ggtgctaaag aaacgtcaga ttcagtcgct      1860
     ttttaagctg cccgcactcc agaaggaatc cgtggccgaa ttgcattgcc ttcttgaagg      1920
     atttgaaagg ataatacaaa ctctcgatca agttgttcaa cctcgagatt ataaggacct      1980
     cctccttgta aactttctca ccacacggtt ggatccggtg actcttagga gttgggaaga      2040
     acaatcggca tctaaggatc aggattcggt gaaggatctc acggaattcc tacacagacg      2100
     gataaggata ttggaatcca tgccgtcgaa accgatggaa aggaatattg ctcaatcaca      2160
     agcccctttg aaacctaaat cctcgatagt taaaactagt tataatgtgg tacagaactc      2220
     tacagtacgg tgcgcggttt gcaaggatag ccacttactg tatcagtgtt ctggatttct      2280
     tcaaatgtcc gttatggaac gggattcaat actgaaagct aatggtttat gtcgtaattg      2340
     tttcaagatt ggccatcagg caaaggattg ccaatcaagg tactcttgtc ggaaatgtaa      2400
     agggaggcac cacacccttg tatgcttcag gtcgaataac gatgcgaaag ttgttccacc      2460
     ttccaaggtc aacaatcttc caaaccctaa ggaacctcat ggatcatcaa gcaatgcaag      2520
     tacttctaat gtggcaagtt cggttgtctc tgagaccgtg gtatctaatg tagctcatca      2580
     ggtttcatca caagtccttc tggcgacggc acttattctt ctggaggatg acgaaggaaa      2640
     tcggtttcca gcaagagctc tcttggactc tggatcagag agtaacttta taacgcaatc      2700
     gttgtgccag cgtatgcgtg tacaaagaag caccgtagat gtctctgtgc tgggtattgg      2760
     ccaatccgct tcaaaagtca agcattctgt cactgcaaca gtcctgtcca gaaacactga      2820
     gttttcccga cagatggagt tcttggtctt gcctagggtc actgttaatc tgccaacaac      2880
     tacagtcaac acagcagggt ggtccatccc aagtggattt atgttggcag atccttcatt      2940
     ctttcaacct aacatggtag atgtagtctt aggaattgaa tgctttttcg atttattcca      3000
     caccggccgg agattttcgc taggagaacg cttaccaaca ttgagtgaaa ctgtattcgg      3060
     ctgggtaata ggcggaggaa tttcaagttc tcagcattct ttacgggtca gctgtaacta      3120
     ctcgtctttc agcaacttgg aagaattgct cgaaagattt tggaaatgtg aggagttgga      3180
     atcaacaaat gcgtactcga aagaggaaag aaaatgcgag gatatatatc aaaagacggt      3240
     tgaacgttca aaggacgggc ggtatatcgt agcactaccg aaaaatgaca caatagcacg      3300
     gatcggtgag tcgagggata tcgcattacg gcggctctta gctacagaac gtagactcgc      3360
     gagaaatacc agtctagccg agcaatattc caggtttatg gaggaatacc ttctgctggg      3420
     ccatatgcag aaagtatcaa acgaagattc taccaatcgc tgctaccttc cgcaccatcc      3480
     tgtcgtcaag gaagcgagta caacgacaaa ggtcagggta gtattcgacg cttcttgtaa      3540
     gacctctact gggttttctc tcaacgattg cttactatgc ggaccaacag ttcaagagga      3600
     tcttcgctcg atcattcttc ggtgtcgtac aaaacaaata atgttggtgg ccgacgttga      3660
     aaagatgttc cgacaaattc ttctacgaca ggaggatcga cctttgcaga gtatcctgtg      3720
     gcgatcatca acagcagcgg aaatcagcgt ctacgaacta tgtactgtca cttacgggac      3780
     taaatcagcg ccattcttag ccacgaggac gctcaatcaa ctggctttgg atgaggaaca      3840
     tcgctttccg ctagcagcga aggctatcta cgaggacacc tacgtcgacg atgttttgac      3900
     aggggctgat aacatcgagg aagccaagga gctgcgatgt caactagaaa aactggcaga      3960
     atgtggagga ttaagacttc gaaaatgggc atcgaactgt tttgaagtat tagagggaat      4020
     atcggaggaa aatctggcaa ttcaagacac ggacagcgtt agtttagacc cggatccttc      4080
     ggttaaaact ttgggtctct cgtggatgcc aaaaacggat gtctttagat ttgagttcaa      4140
     gtttccagta atagatgcaa ctgcagaact tacaaaacgg caaatcttat cggtcgttgc      4200
     tatgttattt gacccattag gattggtagg agcggttgtc accagtgcga aggttttaat      4260
     gcagcaacta tggactttaa taggcaagga tggtcaaaga ttaaactggg atcaaccggt      4320
     accttcaacg gtgggtgaga ccttcagaaa atattacgat caattaccac ttttgaacga      4380
     gctcaggatg aagcgttgtg ttgttatgcc gaatgctgtt tctgtgcaga tacattgctt      4440
     cacagatgcc tctgagaagg cctttggttg ttgcatctac gtacgcagca cgaactctga      4500
     tggaaaagta atggttgaat tgctctcctc aaaatctaag gttgcaccac tcaagactca      4560
     aacaatacct cgtctggaac tttgtggagc tctacttgga gcacagctgt tccaaaaggt      4620
     tcgagactca ataaaaatgg aatttcaagc atacttctgg acggattcca cttgtgtact      4680
     ccgatggatt cagtctcccc cattgacttg ggttacattt gttgccaaca gggtagcaaa      4740
     aatacaaaca attacggatg aaagccaatg gaaacatgta ccaggaatct ttaaccctgc      4800
     tgatttgatt tcaaggggga tctcaccaac agaagtagtt caaaatcaat tatggtggca      4860
     tggcccagaa tggctgaagg aggactcatc gaactggcca ctatcacctg aaaattcagc      4920
     aacaaatacg gaacaaatgg aaaagagacg aactgcagtt gctgctacag cggcgacaga      4980
     aggtttcaac gagttttaca ttggaaagta ttcgtcatac agcaaactta ttcgacatac      5040
     tgcttattgg attcgtttga ttgacctcct gaaaacaccg aaagtggatc gtaaaaacaa      5100
     gggctacctg acgactgagg aattaaggga gtctgaatat ttgttggttc gtcttgtaca      5160
     acaagaaacc ttcgctgatg aatggaacgc tcttgtccac ggacatccag tttcccagaa      5220
     atcatgtctg cgttggtttc atccatgtat cggagctaat aatgtaataa gagttggagg      5280
     aagactcaat aagtctgagg aatcggaaga agttaagcac ccagctgtcc taccagctag      5340
     acatttgttc actaggacgc ttcttcagta tcatcacgtg cgattactac atgcaggtcc      5400
     ccagttatta ttgggagtag taagacttcg cttctggcct ctagggggca gaaatctagc      5460
     tagagagtta gttcataaat gcaagatatg ttaccgagcg aaaccaacac ctgttcaaca      5520
     atttatgggc gaacttccgg catcacggat taccgtctct cgaccgtttc tgaagaccgg      5580
     ggtagatttt tttggaccta tctacgtgag gccagctcca cgaaggccat ctgttaaagc      5640
     ttacgtagct gttttcattt gtctgtgcac aaaagcggtt cacatggaac tcgtgacaga      5700
     cttaagtact gatcggtttc ttcaggcact tcgccgcttt gttgcccgac gcggaagatg      5760
     tgctgtacta tattccgaca atgggacaaa ctttgtcggt gcccgaaata agctactgga      5820
     acttttcaag ttattatccg aagatgacca taaggaagcg gttgccaaat tctgctgtac      5880
     tgaaggcatg cgatggagct tcatcccccc cggatcacca cactttggcg gcatctggga      5940
     gtcagccgtg cgctcagcta agcaccatct gctaaagcta cttggcgaaa atcctgaatc      6000
     tccagaagac ctagccacat tactgacgca agtcgaggca tgtttaaact cgcgacctct      6060
     aactgcgtta tcagacgatc ctaatgacat ggaaccattg acaccggctc attttttgat      6120
     cgggtcatcg cttcagacag tcccagatat taactttcag gatttacctt cgaatcgtct      6180
     taacagaatg caacagatgc agcaaaagat gcagttattt tggacgagat ggcgcaggga      6240
     atatctgcat actttacagg ctcgcactaa gcgatggaaa ccaccaattc aatttcaagt      6300
     cggtcagcta gttgttatcc aagatgaaaa gcaaccacca tcacgttgga agatgggacg      6360
     aatttgtgac ctacatccag gaaccgatgg agttgtaagg gtggtgacat tgaaaacttc      6420
     aaacggtgtg ctgaaaagat ctgttgaaaa actttgtctt ttgccataca tagatggtga      6480
     tgaaacaaca agcgcagaat agtagattac gacttgctca aatcacccct acctccccac      6540
     ttccctttcc ttgtcgaaga ggatttgtat attttcagat attggacatc tctgggtggg      6600
     tgagaa                                                                 6606
//
ID   BEL-889_AA-LTR repbase;    DNA;    INV; 540 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 25.10, Created)
DT   31-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-889_AA-I;
KW   BEL-889_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-540
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-540
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3018-3018 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 540 BP; 158 A; 108 C; 121 G; 153 T; 0 other;
     tgtcggaaag cagcgatcct ggcaaccctg gcagtatgct actttaccaa tagcagatta        60
     tttatagatt tcgacggatg agcatgagag attcggatag gttccacact gctggctatt       120
     gtgatatgga tgaacacatc tctctaatct ctcttatctc gatcgggaaa catcgcatcg       180
     ggatgagatt gaggaagaaa ctagattgta aggcaaatta atgttagtca taagtaagct       240
     tccaaagagt agggcacgcg tgtcagttta gtactaagca ataaatgttt tttagtctta       300
     gtctttgcgt taatacatgt gtttgattgc cgttttaaaa aatgtgtttt atgtgcaacc       360
     ttgaagctgg aaaaccccgg aactcacacg ctgattagga tcaaggacat cgacaaatga       420
     tcactgtttg tgcgagtatc actaggccgc cattatacct atcggttgca cttcaccaat       480
     gttggggacg aaaagccaca tacagtccac atctctaaaa ggtacgttgg atccccgaca       540
//
ID   BEL-88_AA-I repbase;    DNA;    INV; 6781 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-88_AA_;
KW   BEL-88_AA-LTR; BEL-88_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6781
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 4365874 4359094.
XX
CC   Positions [5786-6373] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..3639
FT                 /product="BEL-88_AA-I_1p"
FT                 /translation="MTRKTRSQAKAKAKATTSKQLHDAIVTGICDPRGESV
FT                 ATTSDFAREVESNHQQTNRLVRFMTSDVAADRGADCECPTCNQLVGMERSL
FT                 QCQKCEKYFHLTCTKVSMEPPEQFTCEACILRYSVPKPPSSCGRSSNSSIR
FT                 RARLARELALLEEERKLEEEARKEQLDRERLMNEKAAQEKIERDKQYLARK
FT                 RDLLIQQDEEDDVVSIRSHRSTHSTGKRIEDWIDKQVKTTSSIGIDVVGET
FT                 SKPSEPAHHTPVRSVDAHGQQCTSTPIRDEQIISKKLFAVKSEPSNFIKMD
FT                 LISPTRTTGSITIGDSDPGEAAGGKDQMDGNSISPAIPLVNLNSLQNLLDD
FT                 SRQTVKNTGTLPKLASNLLLPYGQWQRDTALRRTTADLEKRHQSEIDTRRR
FT                 RELDLVEEIKRLQIQKETDTERFRKHESDTKKRLQEFSDRQAAMELRRYEE
FT                 LQQRDAEIGRLKDAERRLTGQLHLYSQAHQSEHVVGMVGATPQLGQQRPTQ
FT                 PGHSNSAAVPLEDFAAATGFVFNPNPVNAIPLIPSKTNSSLRDHGTRQNHD
FT                 PHFPTFPASDRDRPSYSEHISPSPINQPTATSNAPNVGNSRLSSAGYQQVF
FT                 LPSPEQLAARQVLSKELPSFSGDPTEWPLFFSSYSNSTSACGYSDAENLLR
FT                 LQRALQGPAKDAVSSFLLHPSMVPQVMSTLQILFGRPEQIVHIMIEKLRTT
FT                 PSPKPERLETLISFGLVVQNFCAHLKAVGLDWHLSNPSLLQELVDKLPANV
FT                 KFNWALYQQQLPVVDLNVFSDYMTRVISAASSVTLLSAHQKTGKEDRPKLK
FT                 EKAYVNAHTTMDEFSSSSKANQDGVVDARSGKNPCPACDKPGHHAGECSKF
FT                 KALNLDSRWNMVKEFKLCRRCLIAHLRWPCKGVVCGVNGCQKLHHRLLHYD
FT                 SSMDTNQIERSTNATVTIHRKPASSILFRVLPVTLYGKHGKVDTFAFLDDG
FT                 SSVTLIERAIADTLGLNGHAESLCIQWTSGIDKKISNAQMVQMEISAIGSN
FT                 KRFKVGEAYTVNGLGLPKQSLDFEQLADQFKYLKKLPVQSFQSATPGILIG
FT                 IDNAHLLTTLKLREGRMREPIATKTRIGWAVFGRIEGEHQLEHRLMHICTR
FT                 NSLDDLHEYVREFFTLENLGIAISPAHEGVEEQRAKEILEKTTTRTDCGKF
FT                 ETGLLWKNDYIELPDSLPMAEKRLKCLEKRLQKIRSCTKPFAIK"
FT   CDS           3582..5921
FT                 /product="BEL-88_AA-I_3p"
FT                 /translation="MFGEASSKNPELYEAVRNQISEFQRKGYIHEASKEEL
FT                 DTFDLRRIWYLPLGVVTNPNKPGKVRLIWDAAAKVEGVSLNDHLLKGPDLL
FT                 TPLLAVMFQFREREVAISADIMEMFLQILIRPVDRSVLLFLWRDSVDQPIK
FT                 VMVTNVAIFGATCSPTQSQFVKNLNALEYEMDFPRASLAITKRHYVDDYLD
FT                 SVDTTEEAITLAKDVTMIHGKADFFIRNWISNKVEVLEQIGETHPAAVKQF
FT                 SASKDCKFERLLGMIWLPEEDVFSFDLSLREDTQRLLVGDVVPNKRQLLSV
FT                 VMSLYDPLGLVSAFVIQGKILIQETWRENIGWDDKISSKIFSRWKQWLTGL
FT                 REMSKVKVSRCYFPGYDRDSYNSLQLHIFVDASEESYAAVAYFRIKDKGEI
FT                 RCSLVASKTKVAPLQSLSIPRIELMAALIGARLRKTIEDHHSVRVARTFLW
FT                 SDSTTVVAWIKSDTRRYRQFVAFRVNEILSLSSVAEWRWIGTRQNVADEAT
FT                 KWGKGPSTNPECRWYRGPAFLYEGDGDWMEEQVDVTSEELRSAFVCSHFVI
FT                 KPTIKYERFSKFDRLKRCLAYVLRYLENLRRAVNGNPLKFGREFTSEELQK
FT                 AEHSLWLLVQSECFPDEVAVLKHNKQPESSQKSLESSSKLANLPPLMDDQG
FT                 ILRVDGRTDAAEYLSVDARRPIILPREHRATELLLDWYHQKYRHGNDETVL
FT                 NEIRQRFYVAKLRTCLRKTKTRCMWCKVYKCVPVPPKMAPLPRVRLTPYVR
FT                 AFTFVGIDYFGPYMVKVGRSAVKRLCLRA"
FT   CDS           5747..6781
FT                 /product="BEL-88_AA-I_2p"
FT                 /translation="MYVVQGLQVCSGAAKNGPFASSTVNSICSCLYLCWDR
FT                 LLRTVHGESRKKRCEEVVFTCLTIRAIHIEVARSLSADSCKKAIRRFIARR
FT                 GAPQEIYSDNGTNFIGVSRELQSEIRAISTELGSTFTDAYTQWRFNPPSAP
FT                 HMGGCWERMVKSIKLALGTIPVDDKLDDESLETLFAEAEMMINSRPLTFVS
FT                 LQTTDEEAISPNHFLLLSSTGVQQTIKSPVTDGIRIRDSWTAMQKILDKIW
FT                 KRWIIEYLPMITRRTKWFQQVRPISEGALVIIADEKVRNRWIRGRVVRTYP
FT                 GKDGIVRQADVSTVGGVLRRAVAKLALLDVVADNGGSKEDDVLGESSATCG
FT                 GE"
XX
SQ   Sequence 6781 BP; 2014 A; 1459 C; 1650 G; 1658 T; 0 other;
     aaactcaaga atttaacaaa catcttcgat atgactagga aaacacgatc ccaagctaaa        60
     gccaaggcga aggcgacgac tagtaagcag ctacatgacg ctattgttac cggcatttgc       120
     gatccaagag gtgagagcgt agcaacaacg agcgattttg ctcgcgaagt agaaagcaat       180
     catcaacaaa caaaccgtct agtcagattc atgacgtcag atgtggctgc cgatcgtggt       240
     gctgattgcg agtgtcccac gtgcaatcag ctcgtcggga tggagcgtag tttacaatgc       300
     caaaaatgtg aaaaatattt tcatcttact tgcaccaaag tgagtatgga accaccagaa       360
     caatttacgt gtgaggcttg cattttacgt tattctgtac caaaaccgcc gtccagttgc       420
     ggacgttcca gcaattcaag cataagaaga gcccggttag cccgagagct ggctctgtta       480
     gaggaagagc gaaaattgga agaggaggcc cggaaggaac aactagatcg ggaaaggttg       540
     atgaatgaaa aggccgctca ggagaaaatc gagcgcgaca agcagtactt ggcgcgaaaa       600
     cgtgatttgt tgatacagca ggacgaggag gatgatgtgg tcagcatcag gagtcatcgc       660
     tccacccatt caactggaaa acgtattgag gattggatcg acaaacaggt gaagacaacc       720
     agtagtattg gaattgacgt cgttggagag acgtcgaagc cctccgagcc agctcatcat       780
     acgccagtga ggtctgtgga tgcacatggt cagcaatgta cttctactcc tattcgagat       840
     gagcagatca taagtaagaa gttgtttgcc gttaagagcg aaccctcgaa tttcattaaa       900
     atggacctaa tatcaccgac tcgaacgacc ggtagcataa caatcgggga cagcgatcct       960
     ggagaagcag ccggtggaaa ggatcagatg gatggaaatt cgatttcacc tgcgattccg      1020
     ttagtgaacc tcaactcttt acagaatctt ctggatgatt ctagacagac tgtgaagaac      1080
     actgggactc taccaaaact ggcaagtaat ctactccttc cgtatggtca atggcaaaga      1140
     gatacagctc tccggcgcac gacagccgat ttggagaagc gtcaccagag cgagattgac      1200
     acacgccgca gacgggagct agatctggtg gaagaaatca agcgcttgca gattcagaaa      1260
     gagactgaca cagaacggtt tcgaaaacac gaaagtgata caaagaagag actgcaggaa      1320
     ttctcagacc gtcaggcagc tatggaacta cggcggtatg aggaattgca gcaacgggat      1380
     gcggaaatag gtcgcctgaa agatgcagaa agaagactaa cgggtcaact tcatctgtat      1440
     agtcaagcac accagagtga gcatgttgtc ggtatggttg gtgctactcc tcagttggga      1500
     caacagaggc caacacaacc agggcattcg aattcggcag cagtaccgtt ggaagatttt      1560
     gctgcagcca cagggtttgt atttaatcca aatccggtaa atgcgatccc acttattccc      1620
     agtaaaacaa actcttcctt gcgagatcat ggaacccgtc agaatcatga tcctcacttt      1680
     ccgacatttc cggcatcgga cagagatcgg ccatcgtatt cggaacatat ttcaccctct      1740
     ccgataaacc aacctacagc tacctctaat gcgccgaatg tcggaaactc gaggttgtcg      1800
     tcagcaggtt atcaacaagt gtttcttcca tctccagaac agttagctgc cagacaggtg      1860
     ctctccaagg aattaccctc tttctctggc gatcctaccg agtggccact gttctttagc      1920
     agctacagta actcaactag tgcttgcgga tactccgatg cagaaaattt gcttcgactc      1980
     cagcgagctt tacaaggacc ggctaaagat gctgtaagca gtttcctgct acatccctct      2040
     atggtcccac aggtgatgtc aactttgcaa atcttgtttg gacgtcccga acaaatcgtc      2100
     cacatcatga tcgaaaagct tcggactacc ccttcaccga aaccggaacg tcttgagacg      2160
     ttgatatcat ttggactagt tgtgcagaac ttttgtgcgc atttgaaggc cgttggatta      2220
     gattggcacc tatcaaatcc ttctttgcta caagagcttg tcgacaagtt acccgcgaat      2280
     gttaaattca actgggcact atatcaacag cagttgccag tggttgacct taatgttttc      2340
     agtgattata tgactcgagt tatctctgcg gctagtagcg tcacacttct cagtgctcat      2400
     cagaaaaccg gtaaagaaga cagaccgaaa cttaaagaaa aggcatacgt taacgctcat      2460
     acaaccatgg acgaattttc atcttcatct aaagcaaatc aagatggggt ggtagatgca      2520
     agaagcggta agaatccgtg ccctgcgtgt gataaaccag ggcatcatgc tggcgagtgt      2580
     tcgaagttca aagcacttaa tttggacagt cgctggaaca tggtcaaaga gttcaaactt      2640
     tgtcgacggt gtttgattgc acatttacga tggccatgta aaggagtggt ttgtggcgta      2700
     aacggttgtc agaagctgca tcatcgtttg cttcactacg attcgagtat ggacacaaat      2760
     caaattgagc gaagcaccaa cgcaacggtt accatccatc gaaagcctgc ttcatcaatc      2820
     ctctttcggg ttcttccggt tacactttac ggaaaacatg gaaaggttga tacgtttgct      2880
     tttctcgatg acgggtcatc tgtcacactt attgagcgcg ccattgctga tacattggga      2940
     ctgaatggtc acgctgaatc gctatgcatc cagtggacaa gcggaatcga caaaaagata      3000
     tccaatgctc agatggtaca gatggagatc tctgcaatcg gtagcaacaa acggttcaaa      3060
     gtgggagaag cctatactgt caacggacta ggactaccca aacaatcgtt agacttcgag      3120
     caacttgctg atcagttcaa atacctaaag aagttaccag tacaaagctt tcaatcggca      3180
     actccaggaa tattgatagg gatcgacaat gcgcatctac tcacgacgtt aaagctacga      3240
     gaaggtcgca tgcgagagcc aatcgccaca aaaacccgca ttggttgggc tgtttttggt      3300
     cgaattgaag gggaacatca actggaacat cgtcttatgc atatctgcac tcgaaactct      3360
     ttagatgacc ttcacgagta cgtccgagag ttctttacgc tagaaaacct tggtatagca      3420
     atttcaccag cccatgaagg cgttgaggag cagcgggcta aggagatatt agagaaaact      3480
     acaacccgaa cagactgtgg caaatttgaa acaggacttt tgtggaagaa tgactatatc      3540
     gagttgcctg atagccttcc aatggcggaa aagcgtctga aatgtttgga gaagcgtctt      3600
     caaaaaatcc ggagctgtac gaagccgttc gcaatcaaat aagtgaattc cagcggaaag      3660
     ggtatatcca tgaagcttca aaggaggagc ttgatacctt tgacttgcgg cgtatatggt      3720
     acctaccact cggagtcgtg acaaatccca ataaacctgg taaagtccgc ctaatctggg      3780
     atgcagctgc caaggtcgaa ggagtatcgc taaatgatca tctgttgaaa ggaccagatc      3840
     tcctaacacc actgttagcg gttatgtttc aattccgaga gcgtgaagtg gcgatatcgg      3900
     cggatataat ggaaatgttt ctacaaatcc tcattcgtcc tgtggatcgc agcgttctcc      3960
     tgtttctgtg gagagattca gttgatcaac cgatcaaagt tatggttacc aacgtagcta      4020
     tcttcggcgc aacctgttcg cctactcaat cccagttcgt taaaaatcta aacgcattgg      4080
     aatacgagat ggatttcccg agagcatcat tggcaataac taaaaggcat tatgtcgacg      4140
     actacctcga cagcgtcgat actactgaag aagcgattac actagccaag gacgtaacaa      4200
     tgattcacgg taaagcagat tttttcatac gcaactggat atccaacaag gtggaagtac      4260
     tcgaacaaat cggagaaaca catccagctg cagtaaaaca gttttctgcg tccaaagact      4320
     gtaaatttga aagacttttg ggaatgatct ggctgcccga agaggatgtc ttttcattcg      4380
     atttgtcctt acgagaggat acgcaacgct tgttggttgg tgatgtcgtt ccaaataaac      4440
     gccaattgct tagcgttgta atgagtctct acgatcctct tggattagtt tctgcctttg      4500
     tcatacaggg caaaatcctt attcaggaaa cctggcgaga aaacattgga tgggacgata      4560
     aaatttcttc caagatattc tcccgatgga aacaatggtt aacgggtttg agagaaatga      4620
     gcaaagtcaa agtcagccgt tgttatttcc caggatacga tagagacagc tataattctc      4680
     tccagcttca tatttttgtt gacgcaagcg aagaatccta tgctgcagtt gcctattttc      4740
     ggattaaaga taaaggggaa ataagatgct ctctagttgc atcgaagaca aaagttgcac      4800
     cattacaatc cctctcaata cctcgaatag agctgatggc agccctgata ggagctaggc      4860
     tgaggaaaac tattgaggat catcattcag taagggtcgc tcgtactttt ttgtggagcg      4920
     attctacgac ggtagttgca tggataaaat ccgatacacg acgctatagg cagtttgtag      4980
     catttagggt taacgaaatc ctgagtttat catcggtagc tgaatggaga tggatcggca      5040
     caagacaaaa cgtagccgat gaagctacaa aatggggtaa aggtccatcc actaatccag      5100
     agtgtcgatg gtatcgtgga cctgcattcc tgtatgaagg agatggtgac tggatggagg      5160
     aacaagtgga tgttaccagc gaagagctaa gatctgcctt tgtttgttcg cattttgtca      5220
     ttaaaccaac gatcaaatat gaacgctttt ctaaatttga ccgactgaaa agatgtttag      5280
     catacgttct gagatatctt gaaaacctgc gtagagctgt caatggtaat ccacttaaat      5340
     ttggacggga atttaccagt gaggagttgc agaaagcaga gcactcatta tggcttctag      5400
     tacaatcaga atgtttccct gacgaagtag ccgtgttgaa gcataacaaa caaccagaat      5460
     cgtcgcagaa atcgcttgag agttcgagca aactagcaaa tctaccaccg ctcatggacg      5520
     atcaaggaat ccttcgagtt gacggacgga ccgatgcagc agaatatttg tctgtcgatg      5580
     caagacgccc aataatactg cctcgagaac atcgtgcaac agaacttctt ctggattggt      5640
     accatcaaaa gtatagacat ggtaacgatg aaactgtgtt gaacgagata cgtcaaagat      5700
     tctacgtggc gaaactacgg acgtgcttgc gtaagacaaa aacccgatgt atgtggtgca      5760
     aggtttacaa gtgtgttccg gtgccgccaa aaatggcccc tttgcctcga gtacggttaa      5820
     ctccatatgt tcgtgccttt acctttgttg ggatcgacta cttcggaccg tacatggtga      5880
     aagtaggaag aagcgctgtg aagaggttgt gtttacgtgc ttgactatca gagcaattca      5940
     tatcgaggta gcgagaagct tgtctgccga ttcctgtaag aaggcgattc gcagattcat      6000
     tgccagacgg ggagcgccac aggaaatata ctccgataat ggaaccaact ttatcggcgt      6060
     aagtcgagaa ctacagagcg aaattcgtgc tatcagcacc gaacttggta gtacgttcac      6120
     agatgcttat acgcagtggc gattcaaccc tccctcagca ccgcacatgg gtgggtgctg      6180
     ggaacgaatg gtaaaatcca ttaagttggc tttgggaaca attcctgtgg atgacaagct      6240
     cgacgatgag tcactggaaa cacttttcgc tgaagcagag atgatgatca actctcgtcc      6300
     acttacattt gtatctttgc aaacaacgga tgaagaagca ataagcccca accattttct      6360
     gttactgagc tctactggag tgcaacaaac gattaagagc cccgtaactg atggaatccg      6420
     cataagagat agttggaccg caatgcagaa gatcttggac aaaatctgga agagatggat      6480
     tatcgaatat cttccgatga ttacaagaag aacgaagtgg ttccaacaag ttcgtccgat      6540
     tagcgaaggt gcgttggtga tcattgcaga tgagaaagtg aggaaccgat ggataagagg      6600
     tcgagtagtg cgcacctacc ccggaaaaga tggcatagtt cgtcaagcag atgtgtctac      6660
     agtaggagga gttttacgaa gagctgtcgc taaactcgca ttgttggatg tagtagctga      6720
     taatggtggc tccaaagagg atgacgtact tggtgaatca agtgcgacat gtgggggaga      6780
     a                                                                      6781
//
ID   BEL-88_AA-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-88_AA_;
KW   BEL-88_AA-I; BEL-88_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-420
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 4359093 4358674.
XX
SQ   Sequence 420 BP; 153 A; 73 C; 69 G; 125 T; 0 other;
     tgtaaccaac aagcccctcg gttagagagc caaaactgag acccaaaaat caccaatacg        60
     gcgaacgtca gaggagagag atgaattagt ttaacgtcac tttctaactc aatacaatac       120
     tacctaaaac taaacgaagt acaattttat gaactagcca aattgaatta gttatcggct       180
     gtaattgtaa gtttatttaa tttcttaact acttaaatct aaatttattg aattgtagat       240
     tataaccagg aaattgattt aaccgttttt gttcgctgat aaatctgttc ggacactaaa       300
     ttttaagtga tgcaatatgc taagagagcg tgaattaatt aattaataaa atttgtagct       360
     tgagctgtcc agaattcaaa acgaacgact ttgcttcgag actgccgaac atcacgaaca       420
//
ID   BEL-88_CQ-I repbase;    DNA;    INV; 5773 BP.
XX
AC   AAWU01005995;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-88_CQ_;
KW   BEL-88_CQ-LTR; BEL-88_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5773
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 309-309 (2011).
XX
DR   GenBank; AAWU01005995; Positions   15409    9637.
XX
CC   Positions [4815-5372] - Integrase core
CC   'GGCGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           11..3859
FT                 /product="BEL-88_CQ-I_1p"
FT                 /translation="MNNLTGYCCGICKAAVEKDGDLPFCDHCQQFFHYECA
FT                 QLEKGVKDDSWRCPNCAAEMEVTQVIVKFDDLEKTLQELEAEAKRQEERIF
FT                 AEQKLHKRRLELQQQTQQRQQEAERQMLALEQQLMEQQLAAEKQFQEQQKK
FT                 NKEDFEAKMAQLKAEAKSPKTKKEKKIKKSKGDKKKLDASGTAGPSGISTP
FT                 LRHPGVTIPEVPKPKPTPIPADSGEEGNGNERDESGSDTSGTETESSSSDD
FT                 EQEKAEVEPPKQLRGPTKAQLTARQFLARKLPVFTGRCEEWPMFISSYETS
FT                 NLACGFSNVENLARLQDSIREPALTNVRSLLLLPEKVPAAIETLRMLYGRP
FT                 EQLLNTLLIKVRKADSPRSDRLESFIYFGVVVQQLVDHLEATHMNDHLVNP
FT                 LLIRELVEKLPAGSKLEWIRFKKLKKHVSLRTFADFLSDIVTDASEATLFT
FT                 EPQLQHQPQSRRDAKPKAGSRTHESYLHTHAAAENSGDTNHAGVNNKRPCR
FT                 ICDRTDHRVRNCEKFKQLKLDDRLDAVKKWQLCKLCLNEHGSARCRMNFRC
FT                 NVGNCKERHNALLHSDVPATVVNCNAHDVRARQPVIFRMIPVTLYNGGRSV
FT                 NIIAFLDEGASYTLVDESITKLLNVRGAVQPLRIMWTAGVSRLEKQSENVC
FT                 LSISARGVSTQFQIKNAHTVNELKLPEQTVCFADVVKEYNHLHDLPVADYR
FT                 GAPKILIGLKDLHLYAPLESRIGGAGEPIAVKSKLGWTIYGPHENNAPAAG
FT                 FVGHHASHQVSNQDLHDLLKNQYLLEETGISMALLPESDEDKRARSILEST
FT                 TVRNGDRYETGLLWKADDTSFPDSYVMALKRLKSLERKLLKNDSLYDNVRR
FT                 QIVEYQQKGYAHKASQQELAACDPRKVWYLPLNVVTHPKKPEKVRLVWDAA
FT                 ATVAGVSLNSQLLKGPDMLTSLPSVIFRFRERPVGFGGDIREMYHQLRIRK
FT                 EDTNAQRFLFRNDPTAEPEVYIMDVATFGATCSPCAAQFVKNKNAEEFSKQ
FT                 YPAAAKAIVENHYVDDYYDSASTVDEAIQRAKEVRLIHSKAGFEIRNWVAS
FT                 SSEVVRALGEKEADQKVHLSQNKTTGYERVLGIVWNTSTDEFLFSAEMRED
FT                 LERYLKGELRPTKRVVSSCVMSLFDPQGFLISFTIFGRILIQDLWRAGCDW
FT                 DKAVDDEAWEKWKRWVSRLQEVEGVRIPRYYFQGRARSELRDVGASCVLRR
FT                 ESVRLRCCRLLLDYVVGRPNLRARVREVKGGTAEATQHPALGTAVRCGRLE
FT                 THELRAGEPHPQDCGTVHLVRL"
FT   CDS           3681..5771
FT                 /product="BEL-88_CQ-I_2p"
FT                 /translation="MSSVGPICALVSGKSKVAPLKLLSIPRLELQSDVVGS
FT                 RLMNFVQENHTLKIAERFIWSDSEVALSWIHSDQRKYKQFVAFRVGEVLTL
FT                 TKQSEWRKVPSKLNLADMLTKWDNKHSFRQDGPWSRAPEFIEEAKRLWAIS
FT                 KQQVQLNTPEEMRASVLYHSIIVTEQIIDPQNFSRWTVMVRSVACLARFRS
FT                 NCRRKAKGLPIEALPLSKAMKGLVKRTVPVVPVPLKREEYQMAETYLWRWA
FT                 QAGYFPDEVTTLLKNLELPADKKLSLEKSSVLYKLTPFLDEQKVMRVDGRL
FT                 ERATMVPFEVRFPVILPKGHPVTTKLLEHYHQKMGHAYFETAINELRQRFF
FT                 IPNLRAELKRVMTACVKCKVEKSVPAIPRMAPLPVQRVTPYQRAFSYTGVD
FT                 YFGPVAVTVGRRSEKRWVSLFTCLTTRAIHLEVVHSLTTQSCVMAIRRFAC
FT                 RRGMPIEFFSDNGTNFQGASKEIVRVDAECREEFTDARTSWNFNPPSAPHM
FT                 GGAWERLVRSVKEALKAFDDGRKLTDEVLLTSLAEAEDLINTRPLTYLSTE
FT                 AGSTEALTPNHFLRGVTTNDRGAQRAESTSPAEALRDYYKRSQLLADCFWK
FT                 RWIVEYLPTLNQRTKWHAEAEPIACGDVVYVVEGANRGNWVRGIVTEVFKG
FT                 ADGRIRQAMVRTSRGELKRPVSKLAVLEIQERKTGAKEAPPTRVTGRG"
XX
SQ   Sequence 5773 BP; 1441 A; 1554 C; 1736 G; 1042 T; 0 other;
     aatcttaaaa atgaataacc tcactggcta ttgctgcggg atctgcaagg ctgcggtgga        60
     aaaggacggt gatctgccct tctgcgacca ctgccagcaa ttcttccact acgagtgcgc       120
     gcagctcgag aagggcgtca aggacgattc ctggaggtgc cccaactgcg cggccgaaat       180
     ggaagtcacc caggtcatcg tgaagtttga cgacctggaa aagaccctgc aggagctgga       240
     agcagaagcg aagcgccagg aggagagaat cttcgcggaa caaaagctgc acaaacgtcg       300
     cctggagctg caacagcaaa cacagcagcg tcaacaagag gccgaaaggc agatgctggc       360
     cctcgagcag cagctcatgg agcaacaact cgctgccgag aagcagttcc aggaacagca       420
     gaagaagaat aaggaagatt tcgaggccaa gatggcacaa ctgaaggccg aggcaaagag       480
     tcctaaaaca aaaaaagaaa agaaaatcaa gaagtccaaa ggggacaaaa agaagctcga       540
     tgcctcaggc acggctggcc ccagcggaat ctcaacgccg ctccgacatc cgggagtaac       600
     gattccagaa gtaccaaaac caaaaccgac tccgataccg gcggactcag gtgaagaggg       660
     taacggcaac gaaagagacg agtccggctc ggacactagc ggaacggaga cggaatccag       720
     ttcgtcggat gatgagcagg aaaaagcgga agtagaacca cccaagcagc tacgggggcc       780
     aacgaaggcg cagcttactg cccgccagtt cttggccaga aaactgcccg tattcactgg       840
     acgctgcgag gagtggccaa tgttcataag cagctacgag acgtcgaacc tggcctgcgg       900
     attttcgaac gtcgagaacc tcgccagact gcaggacagc atccgggagc cagcgttgac       960
     aaacgtgcgc agcctactat tgctgcccga gaaggtcccg gcggcgatcg aaactctgcg      1020
     catgctgtac ggccggcccg aacagctgct caacacgctg ctgatcaagg tacggaaggc      1080
     cgactctccc aggtcggatc gtctggaatc gttcatatac ttcggcgtcg tggtccagca      1140
     gctcgtagac cacctcgagg ccacccacat gaacgatcac ctggtcaacc cactgttgat      1200
     ccgagagctg gtggagaaac tacccgccgg gtcgaaactc gaatggattc ggttcaagaa      1260
     gctgaagaag cacgtctcgc tccgaacttt cgctgacttc ctatcggaca tcgtgaccga      1320
     cgctagcgag gccacactgt tcaccgaacc gcagctgcaa catcagccgc agtctcgcag      1380
     agacgccaaa ccaaaagctg gatccagaac gcacgaaagc taccttcaca ctcacgctgc      1440
     tgcggagaat agcggagaca caaaccatgc cggtgtaaac aacaaaagac catgccggat      1500
     ttgtgatcgc accgaccatc gagtccgcaa ctgtgagaag ttcaagcagc tgaaattgga      1560
     cgatcgtttg gacgcagtca agaagtggca actctgcaag ctgtgcctga atgagcacgg      1620
     gtctgcccgc tgccggatga acttcaggtg caacgtggga aactgcaagg aacggcacaa      1680
     cgcacttctg cacagcgacg tccctgcaac ggtcgtcaac tgcaacgctc acgatgtgcg      1740
     ggccagacag ccggtgatct tcaggatgat tccggttacg ctgtacaacg gcggcagatc      1800
     ggtcaacatt atcgcgtttc tggacgaggg agcttcgtac acgttggtgg acgagtccat      1860
     cacgaagttg ctgaacgtcc gcggcgcagt tcaaccgctg cgcattatgt ggaccgctgg      1920
     agtttcaagg ctggagaaac aatcggagaa cgtctgcctg tcgatctctg ccagaggggt      1980
     gtcgactcag ttccagatca agaacgccca caccgtgaac gagctgaagc ttccggaaca      2040
     aaccgtgtgc ttcgccgacg tcgtcaagga gtacaatcat ctgcacgatc tcccggtggc      2100
     agattaccgc ggcgcgccga agatcttgat tggcttgaag gatctgcacc tgtacgcgcc      2160
     tctcgagtct cgtatcggcg gcgctggaga accaatcgct gtaaagtcga aacttggatg      2220
     gacgatctac ggcccccacg agaacaacgc gccagcagct ggattcgtag gtcatcatgc      2280
     tagtcaccaa gtctctaacc aagacctaca tgatctcctg aagaaccagt acctcctcga      2340
     ggaaactggc atctccatgg cgctgctgcc ggagtcggac gaggacaagc gagccaggtc      2400
     gattctggag tcaacgacgg tgcggaacgg agatcgatac gaaaccggcc tgttatggaa      2460
     agcggacgac acaagtttcc ccgacagcta cgtgatggcg ctgaaaaggt tgaaatccct      2520
     ggaaagaaag ctgctgaaga acgactcgct gtacgacaac gtgcggcgcc aaatcgtcga      2580
     gtatcaacag aagggctacg cgcacaaggc ctcccagcaa gaactggctg cgtgcgatcc      2640
     gcgaaaggtg tggtacttgc cgctgaacgt ggtgacgcac cccaagaagc cggagaaagt      2700
     acgcctcgtg tgggacgcgg ccgctactgt ggcgggagtc tcgctcaaca gccagctgct      2760
     caaggggccg gacatgctga cgtcgcttcc ttccgtgatc ttccgattcc gtgaacgtcc      2820
     tgtcggattc ggtggtgata tcagggaaat gtatcaccag ctgcgcatac ggaaggagga      2880
     tacgaacgcc cagaggttcc tgttccggaa cgacccaacg gccgagcctg aggtgtacat      2940
     catggacgtc gccaccttcg gggcaacttg ctcgccgtgt gccgcgcagt ttgtgaaaaa      3000
     caagaacgcg gaggagttct cgaagcagta tcccgcggcg gcgaaggcaa tcgtggagaa      3060
     ccattatgtc gacgactact acgacagcgc gtcgacggtc gacgaagcga ttcagcgggc      3120
     gaaggaggtc agactcatcc actcgaaagc gggcttcgag atccgcaatt gggtggccag      3180
     ttcaagcgag gttgtccgcg cgctgggcga gaaggaagcc gatcagaaag ttcatctcag      3240
     ccaaaacaag acgaccggtt acgaacgagt gctgggcatt gtgtggaaca cgagcaccga      3300
     cgagttcttg ttctcggccg agatgagaga ggatctggag cggtacttga aaggagagct      3360
     gcggcccacg aagcgggtgg tgtcgagctg cgttatgagc ctgttcgacc ctcaaggttt      3420
     tctgatctcg ttcacgatct tcgggcggat tttgatccag gacttgtggc gggctggctg      3480
     tgattgggac aaggcggtcg acgacgaagc gtgggagaaa tggaagcgct gggtgagtcg      3540
     cctgcaagaa gtcgaaggcg ttcgaatccc gcggtactac ttccaggggc gcgcacgatc      3600
     tgaactacga gacgttggag cttcatgtgt tctgcgacgc gagtcagtgc gcttacggtg      3660
     ctgtcgcctt cttctggatt atgtcgtcgg taggcccaat ctgcgcgctc gtgtccggga      3720
     agtcaaaggt ggcaccgctg aagctactca gcatcccgcg cttggaactg cagtcagatg      3780
     tggtcggctc gagactcatg aacttcgtgc aggagaacca caccctcaag attgcggaac      3840
     ggttcatctg gtcagactct gaagttgctt tgtcgtggat ccattctgac cagcgaaagt      3900
     ataagcaatt cgttgccttt cgcgtcggcg aagttctgac gctgaccaag cagagcgagt      3960
     ggcggaaggt gccatcaaag ctgaatctgg cagacatgct caccaagtgg gacaacaagc      4020
     acagtttccg gcaggacggg ccatggtcac gagcgccgga attcatcgaa gaagccaaga      4080
     gactgtgggc catctcgaag cagcaggtgc agctgaacac gcccgaggag atgcgagcga      4140
     gtgtgctgta ccacagcatc attgtcaccg agcaaatcat cgatcctcaa aacttctctc      4200
     gctggacggt gatggtaaga tccgtggcgt gcctggctcg atttcgctcc aattgtcgca      4260
     gaaaagcaaa gggtttgccg atcgaagcac ttcccctttc gaaggcgatg aaggggctcg      4320
     tgaaaaggac cgtgccagta gttccagtcc cgctgaagcg ggaagaatac cagatggcgg      4380
     aaacatactt gtggagatgg gcgcaagcgg gctactttcc ggacgaggtg acgaccctcc      4440
     ttaaaaacct cgaactcccc gcggacaaga agctatccct ggagaagagc agcgtgctgt      4500
     acaagctgac cccgtttctg gatgagcaga aagtgatgcg agttgacggt cgacttgagc      4560
     gagctaccat ggttccgttt gaagttcgct ttcccgtcat cctgcccaaa ggtcatcccg      4620
     tgacaacgaa gctgctggag cactatcacc agaagatggg ccacgcgtac ttcgagacgg      4680
     caatcaacga gcttcgacag cgtttcttca tcccgaacct acgagccgag ctgaagcggg      4740
     tgatgacggc gtgcgtgaag tgcaaggtgg agaaaagcgt accggcgatc ccgagaatgg      4800
     caccacttcc agtccagcgt gtgactccat atcagcgggc gttcagctac accggggtcg      4860
     actacttcgg cccagtagca gtgacggtcg ggcggcgttc cgaaaagcgt tgggtcagcc      4920
     tcttcacgtg tttgaccacg cgtgccatcc atctagaagt cgtgcatagc ttgaccacac      4980
     agtcgtgcgt catggctatc agacgattcg cttgtcggag gggaatgccc atcgagttct      5040
     tcagcgacaa cggcacgaac ttccagggcg cgagtaagga gatcgtacgc gtggacgcgg      5100
     aatgcagaga agagttcacc gacgccagaa cgagctggaa cttcaaccca ccatcagcgc      5160
     cgcacatggg cggggcctgg gagaggcttg tgaggtcggt caaggaagca ctgaaggcgt      5220
     tcgacgacgg gaggaagctg acggacgaag tgttgctgac cagtttggcg gaagcggagg      5280
     atctcatcaa cacacgtccg ctgacgtacc tgtcaaccga agcaggatca accgaagctc      5340
     tcacgcccaa ccatttcttg cgaggagtga cgactaacga ccgcggagct caacgcgctg      5400
     aatcgaccag tccagccgaa gctctccgag actactacaa gcggtcgcaa ctccttgctg      5460
     actgtttttg gaaacgctgg attgtggagt accttccgac cctgaaccaa cggacgaagt      5520
     ggcacgcgga ggcggagcct atcgcgtgtg gagatgtcgt ctacgtcgtg gaaggcgcta      5580
     atcgcggtaa ctgggtccgg ggtatcgtga cggaggtctt caagggtgcc gatggacgca      5640
     ttcggcaggc gatggtgagg acaagcagag gtgagctgaa gcggccggtg agcaaactgg      5700
     cggtgcttga gattcaggag cgtaaaactg gtgcgaagga ggctccaccc accagagtta      5760
     cggggcgggg cga                                                         5773
//
ID   BEL-88_CQ-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   AAWU01005995;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-88_CQ_;
KW   BEL-88_CQ-I; BEL-88_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 310-310 (2011).
XX
DR   GenBank; AAWU01005995; Positions    9636    8989.
XX
SQ   Sequence 648 BP; 206 A; 122 C; 136 G; 184 T; 0 other;
     tgttggcacc gcgatgaacc gtcctagtgc agcacgcgaa acacgccagc cgaaatgcta        60
     gttgaaagaa gaacgcagaa aagggacgga gcatccggaa agccggctcg ttcagatcaa       120
     aaacaaaatc tattgtatta tcacctaacc aacagcagaa attcgtgcag gagataattt       180
     gctttatttg cgtcgataat taactttttt gaacagtgac cagtttgtaa actgttcatc       240
     tcgttgtaag tgatcatttg atacaatatt tgtgcgcaca gttgtataat taatcttttt       300
     attagcgata ttacttacac cgcgtggctc gaggccgcaa ggggcgaaga gtagagataa       360
     ttagccagaa ttaaggctgc aaagccgttt tcggatatgt aagttaaaga ataattcgtt       420
     ttcgcacaaa gttccttata tttgattatt tcgattagcg cgcagaagtt ccgctagcaa       480
     agctagcctg tgagaagagg ttaacggagt tacaaggaaa ctattcatgt gagtttgttt       540
     actacacttg aacccacaca atgctaaata aatattactt tttagtttta agctgttaca       600
     acaaagaact gctttaaaaa tctagttgtc cgaactacgg tccgaaca                    648
//
ID   BEL-890_AA-I repbase;    DNA;    INV; 6046 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 25.10, Created)
DT   31-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-890_;
KW   BEL-890_AA-I; BEL-890_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6046
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6046
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2985-2985 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6046 BP; 1763 A; 1385 C; 1478 G; 1417 T; 3 other;
     gttactcaaa atatttacta cgagatgacc ggacaatgta aaaagtgcaa cgagtcggac        60
     aacgatgaaa tggtggcctg cgatgcgtgt gcaacttggt accactttac gtgcgtagga       120
     gagtctcccg gagtcgctaa tcgctccttc tgctgccccg tgtgcttgga gaaaaggaag       180
     aaaggcaaga aaggacaaaa gggaaaaacg gcgaatcaat tagggctgtt tgctaacgta       240
     cctggtacgt ccaacgatgc atcttcttcc aagagcgtct cttctaagaa gtccacagca       300
     gcagcaaagg ataacgaccc agcaacgaaa tcgtttccat caagagaaat cgacgccaaa       360
     tcagtagctt ccagctcgag ccgtgtgtca gaatcacgta tgcagctaga gtttcgtcgc       420
     atggaagagg aactggcact caaagaaaaa cagcttgacg aggaaaggca gatgagggag       480
     aagaagcttg agatcgagaa gcagttcatt caacgaaaaa tccaacaaga aagagaattg       540
     agagagaagg agctagcaca agagaaggca ctgctagaca aacagctagc tgatcaaatt       600
     gagttccaga atcgacagcg tgagctccga gagcgattcc agcgagaaaa gtttgaaatt       660
     ctttcggcga acttggaact ggaaggtgca gtcgggggta tgctacccgg cgtagatgta       720
     gcacaggata accagcatat ggtggaggcc tggttgaata aggatgggga gaaaacaatc       780
     cgcgcaacag tgcaaggatg cgaggcttca gatgaagcag aagcaaaatc aacttcaaag       840
     cagcgtatca ctaagaaaca gtacgtgctg gagactccca aacgacatcc tgaaataaca       900
     gcagtgccgc ctggtgcgac aaatcttaaa tttccaacct ttccacaagc cgaagatttc       960
     tccgaacgaa atgcgaacga cgaggacgat gacgtttcag aggatgataa ctcactagat      1020
     gcaccacagg cggttatgcc tgcagggcct tcaaaggcgc agcgcgcagc ccgccaaata      1080
     ctttctaaga agcttcctat ctttacggga aaggtggaag agtggcctct gttctatagc      1140
     agcttcgtga actcaacaac agcatgcggc ttttcgaaca ttgagaatct tgtacgctta      1200
     caagaatgtt taaaaggtgt tgcattagaa tctgttcgca gtcggctgct cctaccgcaa      1260
     gctgtgccac aggtaattga aacactccgg atgttatacg gacgccccga gcagctaatc      1320
     catacccttt tgaataaggt taagaaagct gatgcgccca gagccgatcg attagaaaca      1380
     ttcattccgt tcggactcgc cgttcaagaa ctgtgtgatc atttggtggc agcaaacttc      1440
     caggatcacc ttgtaaatcc agtactcata caagagctcg tagacaaact tcctgcgcct      1500
     acgaagagag aatgggtaca attcaaacga ttcgtccaac cagtgaccct cagtacgttt      1560
     gcacaattta cttctaaact ggtagctgaa gccagtgaag ttatcctcgt catcgatcca      1620
     aaaacgaagg gcgaaaaggt gagaggcaag gaccgtggat ttgtgaacgc acacacaaat      1680
     gtacgggaat cgtcttacac caatccgaaa ccagcgattc tctgtcgaat atgccaaaaa      1740
     ggggaacatc gtattcgaaa ttgcgaagaa tttcggcgac ttaaccttga agaacgtgtg      1800
     aaggtcatgg aacaactgaa gctatgtgag cgatgcctta acgaacatga aggatggtgc      1860
     aagtttaaaa ttacctgtaa tgtaggcact tgccgcctcc accatcatcc cttggtacat      1920
     cgtgagcact caaacgtttc agcagctcca gctcgtacac ctatgcatca tgcaccgagc      1980
     aacagcttcc actgtatgca tgtaagctcc accccgtcca ttatttttcg aattgcacca      2040
     gttatgttgt tcaatggtag caagtccgtc cgcacgatgg cctatttcga cgagggatct      2100
     gaattaactc taattgacga ggatctagtt cgggccttac gagccagtgg aatgtcacaa      2160
     ccactgaaac tgcgctggac gggaaacatc gttcgcgagg agcggcattc ggaatgcgtt      2220
     tcgttggaga tttcaggaat ggaaagtttc caacgtttcg acctgaaaaa tgcacatacc      2280
     gtcgagagac tgtatctacc taaacagcac atcaattttg gtgaaattgt tcgtcagtat      2340
     cgtcatttga aaggagttga aatacccgac caaataggcg accaaccgaa gatcctcatt      2400
     ggactcaaca atgcatatct acttgcaccg ttggattccc gcattggaaa tgcagatgag      2460
     ccgattggtg taaagtctca ccttggatgg acagtctttg gccctacacg ttcaccccct      2520
     ccaatggaat cctttgttgg gtaccatgtc ggcctgacaa acgcggaatt acacgatgcc      2580
     atgaggaagt atttcaccgt cgaggacatg gaaggggcag tgagtctact ccccgagtca      2640
     acaacagacc gtagagcaag agaaatcatg caaaacacaa cggtgaagcg aaatggtcgt      2700
     tacgagacag gtcttctgtg gaaaactgat gactttacct ttcccgacag cctgccgatg      2760
     gccttgcatc ggcttcgtgg tttggagcgt cgcctggaga agaacccaga tttggacaag      2820
     aaggttcgac agcaaatcca ggaataccaa actaagaatt acatccataa agcctcaacg      2880
     gaagaactcg aaaatgcaaa ccaagcgagg gtctggtacc ttccccttaa tgtggttcta      2940
     aatcctaaaa aacctggaaa ggttcgtttg gtttgggatg cagcggcaca agtacgagga      3000
     atttcgctca actcaatgct attagccggt ccagatttgt tggtcccctt gccggcggtg      3060
     ctgcaaccat tcagagaacg cgcagtagcc tttggaggag atcttaaaga gatgttccac      3120
     cagttcaaca tacgtgaggg cgacaagcaa gcgcagcgat ttatatttcg cactgatcgt      3180
     gagaaagatc cggaagtctt tgtaatggat gttggaacct tcggcgctac ttgctctcct      3240
     gcatcggcgc agtttatcaa aaaccacaat gctgctaagt acgctgttca atatcctgaa      3300
     gctgcgcgtt ccataatccg cctgcactac gtcgatgatt acctagacag tgcggatagc      3360
     atcgacgaag cagtgaaacg tgctaaagaa gtccgcttca tccactctca agctgggttc      3420
     accatccaca aatggatttc gaattcacca cgatttctag aggaaattgg agaacggaac      3480
     acagaggaga agatatcact tcaactcgac gagggctcta cagaacgagt gttgggtctc      3540
     atctggcgcc ctaaggaaga cgtatttatg ttttcaacct ctgtaaggga agatttggcg      3600
     ccatacttgt taggaaccga ccggccaact aaacgattgg ctctcagctg tatgatgagt      3660
     ctttttgatc cattaggtct gctggcgccc ttcactctgc atggtaaaat actgcttcaa      3720
     gatttatgga aaagcggctg taactgggat gaggwgatca acgacgagtg cttcaaaaaa      3780
     tggacatggt ggaggaatac tctttcatcg attgagaatt tgcaaatacc tcgatgctac      3840
     ctgaaaggat cttcagctgc aggctacgat aatttgcaac ttcatgtgtt ttgcgatgga      3900
     agctcacaag cgtatggatg tgcagcctat tttcgtttgg aaactcctgg aggcataatt      3960
     tgcagtttgg ttatggccaa aaccaaggtg gcccccttaa agcagctttc gatccctcga      4020
     atggaactac aagcagcggt gcttggggct cgattggcca acgcggtgat cgctaatcac      4080
     agggttaagg tagctaaacg catactttgg tctgattctc ggaccgttct ttcatggatc      4140
     caatccgatc aaaggaaata caaacccttc gttggattcc gaattggcga aattctgcaa      4200
     gaaacagctg tggacgattg gcgttacatt cgaacgaaga tgaacatcgc agatctgctt      4260
     actaagaaga aacgagatag cagtttgagc tcggatgggg aatggttcca cgggccgaaa      4320
     atcctgtatg cacctgaaga gagttggctc ggtatcaatc aaatgacccc gaatacaaac      4380
     gaagagatac gcgcttgtca ccttttccat gctggccctg tagtcgacct cgaagggcca      4440
     ctcatcgatg taacgcggtt ctccaagtgg aatgtcctga ttcgcacaat ggcatgtgta      4500
     ttccgcttca tctcaaattg ccgtaaaaag cgacaaaata catcaataga agtcgtggaa      4560
     actactgata agattaaaaa gctkgctcgt cgtccaatta attcaatatt ggttcctttg      4620
     aaccaggagg agtatgaaat ggccgaaatt gtcctatgga aattagccca aagagacgcc      4680
     ttcggagagg aaatagcaat cttactacgc aatcaaaaat cagcgacaga ggaatggttg      4740
     aagatggaca aaaaaagcgt tctgtataaa ctcgcgccgt ttctagacga attccaagtt      4800
     ctacgcgttg acggtcgttt gagtgaagct gaattcatgc catacgacac ccgttttcca      4860
     atcatcctgc ctagccacca tccagtcacc aacatcctca ttgatcatct tcatcgccgc      4920
     tttggacacg cattcaaaga cacagtcgtc aatgaactgc gaaaccgttt ccatgttccc      4980
     aaagcaagat cgtgcgtttc gaaagtcatc gagagatgcc aaacttgcaa agtgaagaaa      5040
     agtcaaccgt atatacccag gatggctcct cttccgatcg agcggctaac tccgttcgtt      5100
     agacctttta gctacgttgg gatcgattac tttggtccag ttgatgtagt cgttggaaga      5160
     catggtgaga agagatggat agtactcttt acttgtctgt cagtacgggc tgtccatcta      5220
     gaagtggcat ataaactgga cacagcgtct tgtataatgg ctatacggag attcgttctg      5280
     aggcggggtc cacctatcac aatattttcc gacaacggga ctaacctcaa ggcagccaac      5340
     aaagagctac aggagcagat caaacgtatt gatacagcgt gtgccaacgt atttaccaat      5400
     gcccggacgc gatggaggtt taacccgccc tctgcgccac acatgggggg cgtctgggag      5460
     cgcatggtgc gttccgtcaa acaagtgatg tcggaattga acaccggtag aatgaatgat      5520
     gaaacgctat tgacagtgat aactgaggct gaagaaatcg tcaattcgag accgctcgtt      5580
     tacatgccac aggattcgat acacgctgaa gcattgaccc cgaacagttt tgttagagga      5640
     gtaacgtcgt gtttggataa tccagcaatc gcatcgacag accaagctga agcccttcga      5700
     aatgcttaca agcgttcaca gataattgca gacactctgt ggaaaaggtg gataaaagaa      5760
     tatctacctg ctcttaattg ccgaaccaaa tggttggagg aaagtaaacc attggctgcg      5820
     ggagatttag ttttcatcgt agatggaccc aacaggaacg ggtggattcg aggccaagta      5880
     gaatctgtat atmttggcaa ggacaatcgc atccgacagg catcagttcg taccgctcac      5940
     ggagtgtatc gtcgacctgt aaccaaattg gcggttattg aaattgcatc ttctggtaaa      6000
     tctgttccaa aactaggttc tggacagggt ttacgggccg gggaac                     6046
//
ID   BEL-890_AA-LTR repbase;    DNA;    INV; 638 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 25.10, Created)
DT   31-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-890_AA-I;
KW   BEL-890_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-638
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-638
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3019-3019 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 638 BP; 190 A; 121 C; 111 G; 216 T; 0 other;
     tgttaccacc actaccaacg gtcggcgtac ctactgccta atctacatac gttgtcatcg        60
     ctgatgagac tgacagtccg attgaaaggc aattgatttc gtaatagcca tcgaatggtg       120
     tataacgtgg tcttgatcct atgtgcaata tgattgattt tgtgaatttc ccgattataa       180
     tttggtacat ataagtcgtt gaactggtga aatatcttta agctcgatag gtaattcaat       240
     aatcttgaat tcgtgaaata gttgttagaa tgccctgttt ttatatgtag tttgccaata       300
     taggttatct cccctcaatt gtgccattaa acccgaagta cttgcggata ccaccataga       360
     attgttgaac tccaatatac aacacatgta agcctccaca atttagccgt tgaatgattc       420
     taattgctaa atttcgattt atttagattg tatagaccat tcattcgtac gttgcctacc       480
     acttttctca gagtcagggt ttggaaacta aatatgtaag atgatccata ttgtattcaa       540
     tagtcaaaag ttcgataata ataaaatctc tttttagttt gagctgattc tctaaaacgc       600
     gctgcttcaa aaattagtaa ccactctgtg tccgaaca                               638
//
ID   BEL-891B_AA-LTR repbase;    DNA;    INV; 775 BP.
XX
AC   .
XX
DT   02-JAN-2019 (Rel. 25.10, Created)
DT   02-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-891B_AA-I;
KW   BEL-891B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-775
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-775
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3030-3030 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 775 BP; 273 A; 155 C; 129 G; 218 T; 0 other;
     tgttggcaac ccttcattgc cagcgcgtac gttcattcgg cggccttggg tcacacatac        60
     caatagcttg aactggatga caggtaaacc taaaagcgtc aaacggtgag tggaagacag       120
     gacaaaaaca aaaacgacaa ctagttagat gagttgacag aaaattctaa agctattcct       180
     tattctaaag cgtataccgc attcttgtga actattaaat taaaattact actattacta       240
     gaaccgtgta aaaagtggat tgcattctta aagtaaagta ttttttctta aaatcatact       300
     acttatgaaa taatatgaat tgtgaactta catactaggt ggattcagag ctcgaactat       360
     catcacttaa ccctaaatac cgtggcactt tataataagt atttgcttcc caacggtaag       420
     aaactatcgg taaattgaaa ctaaacattt ataaacattc aattatgtac taaactaggc       480
     tgttgtccag accgacatcg aagaccaaac gatccgacca tagggactaa acgtaagtcg       540
     acaaactatt gactagacta aacatacaga tatgtactaa cacgaccatg gtcttgcgac       600
     aaaacaatgt atttgatctt aaattctaaa cataatcata aattcattat ctccgatcag       660
     gataattata acctgccgca ttaccacaat caatttctgc gttttatttg gcggtggtta       720
     taatcacgga agttaacccc acggtgccag tactctgttg gttagaacac caaca            775
//
ID   BEL-891_AA-I repbase;    DNA;    INV; 6084 BP.
XX
AC   .
XX
DT   02-JAN-2019 (Rel. 25.10, Created)
DT   02-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-891_;
KW   BEL-891_AA-I; BEL-891_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6084
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6084
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (02-JAN-2019).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 6084 BP; 1739 A; 1377 C; 1543 G; 1425 T; 0 other;
     tattataatt atcgtttacc attcggaaat gtcgagtcgc gaagcatacg gtcccgggaa        60
     aaatgtcaag gtgaacaaaa agggtaaaag ctcaaaagcg aaatcagatg aagtggttaa       120
     tagtggtgct gacgtatcga tagtggtcac gggagttcca gaagagatcg tggatcgaac       180
     attggcgggt cggacttgta aatcctgcag gggtccagat aacgacgaga tggtgcagtg       240
     tgacgattgc gataagtggc atcatttcgg ttgcgttggg gtgactgagg aagttgcaga       300
     tcatagttgg agttgtccaa agtgtgtatc agcaaaatgg gttcaacgat cggagtcaac       360
     ttccagcaaa caacttcaac caactggtaa ggctacggag agcgcgatca tacaaagtct       420
     gtcgacgttg aagggatcaa acgagaaagt tcagcggagc ttcgcaggga atgtaatcga       480
     cgattcaagc gatcttaaga gtaggaagga acgacaacag gccagtgaca agctcttaga       540
     tagcagtttg gcatcgagtg tcttgtcttc atcatcacgc agatcatcgc gaacgctttt       600
     gaaactacaa atgcagaaat tagaggagga gcaaaggttg gctagagagt tcttggacag       660
     aaagtatgca atactggaag aggccgccag cgacaggagt tccaagtcta gttccaaggc       720
     aagttccaaa gttagttgca gtatgaaccg agtacgtgat tgggtaaaag gcgataactt       780
     tcgtcgagaa gaagaagctg tgctgaacta ccccgatgtg ttcgatccgg aacgacattc       840
     tacgcagaaa ccaagtgtgt tattgggctt gaaccaacag ttccaggacc agttgacgat       900
     cgggagaacc ttttcgatga gagcagtgtc tgatgacatc gcagaaccag taacgtcgct       960
     agcaagaccg tgcggttctc aacatggagt ggcagagaac cggctcggtg gcactcatca      1020
     atacgttcca acgtcacgcg tggcgcaacc tcactactgt ttcgaaaaca cttctatgcg      1080
     gcaggcacac tctatgaggg aatcacgagg cttcgaagac ccatgttctc ttactaggaa      1140
     gcaattagcg gctcgtcaag ctatatcaaa ggacctaccc agcttttcag ggaatcccga      1200
     agaatggcct atattcttct cctcgtacac taacacaaca gctatgtgtg ggttcacaga      1260
     tgcagaaaat gcggtccggc tacagaaaag cttaacggga aaagcgtatg aagcggtgaa      1320
     aagtcggttg atgcacccat ccaacgtaaa aggtgtaatc gaaacacttc gtatgagatt      1380
     cggacaaccg gaagccatag tccattcgct tatagctaga ataacagcac taccgccatt      1440
     gagagaagac aaactcgaga cgataatgga tttcgcagtg gaagttcaga acttctgtgc      1500
     aatcttggat gcatgcgagt tggaggagca catgtacaat gtctctctat tgcatcaact      1560
     cgtctgtaga ttacctccgt cgatcaaact tgattgggcc agatatcgcc atacacttcc      1620
     tagggtcaac ttggcgacct tcggaaactg gatttattcc ttagcagagg ctgccagtac      1680
     tgtagctatc cctggaattt cagattccag gtccacgaag gtagagtcac gtccgaataa      1740
     gaaatctacc ggattcatta acgcacacgt ggaccaaatt cagtcagaac tgagtgcgga      1800
     tgctgaggcc gtttcaagga tcggggagtg tctagtttgc aagtccacgt gcaaaacaat      1860
     tgagaactgt aagcagtttt tggaactgtc tagggagtcc cgatggccgt agttcatgat      1920
     tttgatctgt gccgtcgttg cctgaggaag cacaatggtg ggtgcaaggc taaaatatgc      1980
     ggaaaaggtg gctgtacaag aaaacatcat gaacttttgc ataacgagaa tcaaagcaaa      2040
     gcgaattcga acaatttagc aaccgatata agtcagcgag aacagcaagg gacgaactcg      2100
     gctcggcacg agtgcaacag tcatcgttct aactctaaca gttctctatt ccgctacctc      2160
     ccagtcactc tttatggcaa aagtgggtgc gtgcaggcat tcgcttttct ggacgaaggt      2220
     tcaaagttga cgctcatgga ccagggcctt gcagatgaac ttgaggttgg atggtgtgga      2280
     aagtccactt ttcctccgat ggactggcgg caccgagcgg tgcgagaaag actcgcgtgt      2340
     tattagcgtt tcaattgaag gcacgtatga cggagcaaag aggttcaagc tagatgaagt      2400
     gcgaacggtg aagcagctcc aattgcctcg acaatcctta gatgccaaga agatgaagga      2460
     acaatatccg tacatgcgag gtctacccat cgagtcatac gaaggtgctc gaccaagaat      2520
     tttgatcgga ctgaagcatg cccacgttag tattgtgctt cagtgtcgtg aaggaaagct      2580
     tgaccaacct atagccataa aaacgcggct aggctggacc gtatgtggcg gaagcgagga      2640
     cgaaaatgcg ccaagcatgg tgcactattc gttccacgta ggatcacggg acgatcattc      2700
     ggacgaagac ctccatcaag ctatgaagga gtatttctcc ctcgatagtc tcggcgtggt      2760
     gaaaacaagt gaagctctac tatcaacaga agatcaacga agctgtagga tgttggaaac      2820
     cctaacaaat ttcaacggtg aacgttatga gacggggttg ctgtggcgct atgatgacat      2880
     ccgtctaccg gataatcggt cgatggcact tcgtcgacat cgcttactgg aaaagcgcat      2940
     gaccaaaaat ccagacctag ccaaagcctt gaaccaaacg atattggatt atgttgcgaa      3000
     aggatacatt agagaactta ctaaagagga agaaagtcag ccagcttcac gaacttggta      3060
     tttacctgtg tttccggtat tcaacccgaa caagccgggg aaggtacgaa tcgtgtggga      3120
     tgcagcagct acgatcttcg gagtatcgct gaactcagca ttactgaagg gtcccgatca      3180
     gctttgctct ctctttgcca tattactgca attccgagaa cataagattg ggctaacagg      3240
     cgatatacgc gagatgttcc atcaaattaa aatacgggaa caagaccggt catgtcaacg      3300
     ttttttctgg aacaatggag ctggagaaac cgccgtttac gagatgtgtg ttatgacatt      3360
     cggtgcgtgc tgctcgccta gcactgcaca atacgtcaag aatttgaacg cggaacgttt      3420
     ctgtgggctg tatccgaaag cagttgacgc aatcattaaa cggcactacg tggacgacat      3480
     gttggtgagt gtagagacag aggaagaagc cattcgtaca gcgcaacagg ttaagtgcat      3540
     ccactcccaa ggaggattcg aaatccgcaa ctggataagc aattccccgg ccgttctaca      3600
     atcactgggg gaggaagata cgaagaccaa gaaccttgat ctatcagctg agatggaaac      3660
     ggaaaaagtt ctaggactct ggtggtgtac tgagaatgat acgttgacgt acagagttgg      3720
     ctggacccgt tacgacgaaa tgcttttgac aggtcaacga cgaccgacaa agcgggaagt      3780
     gttgaaagtg ctcatgtcaa tttttgatcc gcttgggttg atcgcccacc ttcttattta      3840
     tttgaaggtt ttactgcagg aaatctggcg ctctggcgta caatgggacg aagagatcaa      3900
     tgacagcttg tttttgaaat ggcaaacctg gctgcaagtg cttcctgaag tcgagaatgt      3960
     acaggtacct aggtgctaca cccttcaaga ctttcccaat tgcaaagtcg agttacatac      4020
     gttcgttgat gctagtgaga ctggtttcgc tgccgtatca tttttaagat tctctaacag      4080
     tgacaaagtg gagtgcattc tcatctcggc aaaaaccaga gtcgctcctc tcaagttcca      4140
     gtccattcca cggctagagc tgcaggccgc agttctcggt gcaagacttg ctcaaactat      4200
     cactgaatca ctgtccattc aagcaactcg acgcattttt tggaccgact cccgagatgt      4260
     gctgtgctgg atcaactctg accaccgtcg atttacacaa tttgtggcgc acagaattag      4320
     tgagctcctt gatactacag atgcagttga atggcgatgg gtcccatcaa aagagaatgt      4380
     agcggatgat gccacgaagt ggcaagggcg accggacctt tctgctgata gcagatggtt      4440
     caaaggtccc gagtttctct ggagaaatga agtcgactgg ccacaacaaa ctcatatctt      4500
     ccagtctacg aaagaagaac tacgtccaca tctggttgca catatttcga tggaatcgcc      4560
     agcgttacag ttgactgagt attcaagctg gaaacggctg gtcaacgtga ctggatactt      4620
     ataccgtttt ccaaccaatt gccggcgtaa gatgcaacat catcctattt gtactggccc      4680
     gttgtgcatg gaagagatac gctctgcaga agaatttctt atacgccaag ctcaacgaga      4740
     tgatttctct ggagaagtcg cttcactgac acaaggccaa cagattcatc gaagcagttc      4800
     cctctttaaa ttaactccgt ttatcgacca aagcgggatc ttgcgcatgc gtggacggac      4860
     tagctcctgt atgttcataa ccgaagaaac gaaaaaaccc gatcatcctg ccccgtgacc      4920
     accacgtaac cacccttatc atcagccact accacgagaa attccaccac cttaatcaag      4980
     aaaccgtggt caatgagctt cggcagaagt ttgctattcc cagagtgcgt gcttcctgcg      5040
     ccaaggtaag gagaaactgc cagcgctgta agaatgaccg agctatgcca aatgtcccga      5100
     tcatggctga tttgccaaat gctagattag ctgcatactc tatgcctttc acacacgtcg      5160
     ggatcgacta cttcggacca attgaagtcg ctataggccg tagagttgag aaacgatggg      5220
     gtatgcttgc cacatgcatg actacgcgag cagtgcacat cgaggtagca cattctctca      5280
     gtactgattc ttgtgtaata gccatccgca acatgattgc tcgtcgtgga gttcctcgag      5340
     tcatatactg tgatcgcgga accaattttg taggcacaag tagggaatta aaccgaatta      5400
     gggagacact cgatcatgaa gcgatgatga aagagttcgt tagctcagaa actgcctggc      5460
     actttaaccc accatcatct ccacacatgg gaggttcttg ggagaggttg atacgaagcg      5520
     taaagaacag cttaaaggcc ctgaacctag cacgtcgacc gtcagatgaa attctacgta      5580
     acgcgttgac cgaaattgag aacacgttga actccaggcc actcacacac gtaccaattg      5640
     agaacaacgc cgccccagca cttactccca atcatatctt attgggaacc tctaatgggt      5700
     cgaaaccgct taccacgctc gacgacagct gcatcatcgt gcgacagtgc tggcgtactt      5760
     ctcaaatcat cgcaaatcag ttctggagac gctgggttat tgaatatcta ccggaaataa      5820
     cgaggaggac gaaatggtat acatctactg caaagtctgt gaagatcgat gacatagtcg      5880
     ttatcgtgga ctccacattt ccacgtaact gctggcccaa aggtagggtg attgcgaccc      5940
     gctgtagtaa ggacggagaa gtaagatcag cgacagtacg aacatcagct ggtgtatatg      6000
     agcgaccagt ggtcaagcta gccgtattgg acgttagacg cgaagatgag tagccgacca      6060
     aatcgtcggc gtacccgggg ggag                                             6084
//
ID   BEL-891_AA-LTR repbase;    DNA;    INV; 529 BP.
XX
AC   .
XX
DT   02-JAN-2019 (Rel. 25.10, Created)
DT   02-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-891_AA-I;
KW   BEL-891_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-529
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-529
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3022-3022 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 529 BP; 176 A; 113 C; 99 G; 141 T; 0 other;
     tgttggcaac ccttcattgc cagcgcgtac gttcattcgg cggccttggg tcacacatac        60
     caatagtttg aactggatga caggtaaacc taaaagcgtc aaacggtgag tggaagacag       120
     gacaaaaaca aaaacgacaa ctagttagat gagttgacag aaaattctaa agctattcct       180
     tattctaaag cgtataccgc attcttgtga attaaattaa aactattaaa ttaaaattac       240
     tactattaat agaaccgtgt aaaaagtgga ttgcattctt aaagtggatt cagagctcga       300
     actatcatca cttaacccta aataccgtgg cactttataa taagtatttg cttcccaacg       360
     gctgttgtcc agaccgacat cgaagaccaa acgatccgac catagggact aaacgataat       420
     tataacctgc cgcattacca caatcaattt ctgcgtttta tttggcggtg gttataatca       480
     cggaagttaa ccccacggtg ccagtactct gttggttaga acaccaaca                   529
//
ID   BEL-892_AA-I repbase;    DNA;    INV; 5615 BP.
XX
AC   .
XX
DT   02-JAN-2019 (Rel. 25.10, Created)
DT   02-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-892_;
KW   BEL-892_AA-I; BEL-892_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5615
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5615
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3178-3178 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(293..3586,3553..5589)
FT                 /product="BEL-892_AA-I_1p"
FT                 /translation="MLHTPKKSSVEEQKLQQKKKEETRIMEEQLKVYIHQR
FT                 GAVKGKLTRVKNAIQDDDMEPNQNIENVHFLRCHLNTVDTCYSEFNDLQNK
FT                 IYALPLSDERRSEHEAKYVDFEYLHNDLKIRLNMLLERATKPVVVQSPLQE
FT                 KVAPVHSYLPPLQAPLPTFDGSYEKWFSFKSMFTTIMNRYQQEEPAIKLFH
FT                 LRNSLVGAASGIIDQDIVNNNDYDAAWTFLTNRYEDKRLIMDKHIEALTNL
FT                 PKVTKDSSKDMRKLIDTCTKNVEALKNLALPVAGLGEQMLLHQISSKLDKS
FT                 TRVAWEGRQKKGVYPTYDATIDFLQEQCRIMEKIDVNTKPPMESVKVKSVN
FT                 KSHSLVATNEQKKDNKCLMCKNIHELWRCDQFKQMNVSDKYSVLKKWGSCF
FT                 NCLQKGHRTNTCPSSHNCHDCGKRHHTLLHNDSHPNTVTKETAVKPSNETQ
FT                 PMKPSSSPEVASSGSATTLCSSTASSSKQILLSTAIVMVHGISSALYPCRV
FT                 LLDSASQTHFVTERFATSQRKESVDYLVSGLNGSNTRLRRRIRTTVKSCDG
FT                 SFATELDFLIAPRITSDVPAKSLDVSGWPIPDEIKLADPTFYRKGRIDMLI
FT                 GSEVFWDLLKNDRIRLGPNLPILTKTDFGWIVGGVLEEEGPIIARSLCQTT
FT                 DEERLEDLLKGFYRIESCDESQTATTKSDEECLEHFKQTHYRNDKGRYFVR
FT                 HPFNVRINLLGDSLETATRRFLNLERRLDREPELKLQYSTFLDEYARLGHM
FT                 QAIEVDQSADPGSMFYLSHHCVLKPTSTTTKLRVVFDGSAKSSTGVSINDT
FT                 LEAGPVVQRDLTSILINFRGYRYVLTVDIPMMFRQVGVAFPDTRYQLILWR
FT                 KNKEEPLTTWELRTVTYGLAPSPFQATMALNQVSEDHYDEFPEAACAIKKG
FT                 TYMDDILTGADTVSKICKLQDDMTNLLSKGCFGTHKWCSNAKEVMDRVPEE
FT                 FRGIDFEVNGDNLNATVKTLGVTWNPRDDWFSFRVPVSDPDTCTRRQILSE
FT                 VARIFDPLGLIGPVITSAKLILREVSLLQTGWDEPVSQDLLQTWRSFRNEL
FT                 VQLNELQVPRWISSVGAITVKLHGFSDASDHAYGACVCIPVSRLWCVCVYT
FT                 RIIRHGAEATMHLISSKSRILPKKTGKSKPISTPRAELLAAVQLSRLIDKV
FT                 LHAIDLKVDTVNLWTDSKIVYCWIKKSPQSLQIYVSNRVAEIQRLTGHFRW
FT                 RHIRTSENPADSISRGQRPRDLMKNEIWWKGPPMLRTMTETDEEPELSDAE
FT                 LPELRTSLTMTSRIPKRLEIFDRLSSFDKLQQSMAYVVRFANYIVSKRKLI
FT                 TKGPPTSAERAQALILMVRLVQQECFQSEIQALKENSGSKHRLCSLKPFLD
FT                 SEDGILRVGGRIKHAFIPYDSRHQMLLPAKHPFTEALIRSQHNTNMHIGQK
FT                 GLLAIIRQRFWPLNVKTTIRKIIRNCTTCFKANPVRTEQLMGDLPSYRVRP
FT                 APTFSNTGVDFAGPFLLKSTSVGRKPLITKAYVCLFVCMLTRAIHIELVSD
FT                 LTTDAFLAALRRFTSRRGIPNKMFSDNATNFIGAHSELERLAQMFKDQHEN
FT                 QKIVEFCCKLGFEWSFIPPRSPHFGGIWEAGVKQVKYHLTRVVGDRKLTYE
FT                 ELYTTLTQIEAVLNSRPLAPSSDDPNDFSAITPAHFLIGREMQAVAEPLYL
FT                 NLRESTLSRWQLVQTMLQHFWKRWITECLPELQIRSKWLKRKDIPLGALVL
FT                 VVDQNAPPLHWQLGRITALHPGPDGVTRVVSLRTSKGDYKRAVSEICLLPL
FT                 DMDKDS"
XX
SQ   Sequence 5615 BP; 1650 A; 1281 C; 1352 G; 1332 T; 0 other;
     tgtggtccat cgagccggat tttttcgaaa aaaaccagtg tcgcaaagct atgaaaagtt        60
     ttctttgtga aaagcattga attttgctgt gaaaaatacg agcattcgtc cgtcgcggtt       120
     cggccgaatg taacgacgtg gtggcagcca tcttgtgctt cctacgttcg ttcgaagaga       180
     agaatttcct tggaaaagtt cgcgaacatt cgtccgtagc tgaccgagtg taacgagcag       240
     ccattttgat tcctgacccg ctcgctcatt gtgaaaatgt gaatgtgctg gaatgctcca       300
     cacaccgaag aaatcgtccg tggaggaaca aaagctccaa cagaagaaga aagaagagac       360
     ccgaataatg gaagagcaac tgaaagtgta cattcatcag agaggggcag tgaaggggaa       420
     gctaacccga gtgaaaaatg caatacaaga cgatgatatg gaaccgaatc aaaacattga       480
     gaatgtgcat ttccttcgtt gtcatttgaa tacggttgat acatgctaca gtgaatttaa       540
     tgacttacag aacaagatct atgcgttgcc cctctctgat gaacgaagat ctgagcatga       600
     agcgaaatac gtggatttcg aatatctgca caacgatttg aagatacgtc tcaacatgct       660
     gttggaaaga gcgacgaagc cggttgttgt gcagtcaccg ctccaggaaa aagttgcgcc       720
     cgtccacagc tacttgcctc ccttacaagc acctctcccg acttttgacg ggtcctatga       780
     gaaatggttc tcgttcaagt caatgttcac aacgataatg aaccgctacc aacaagagga       840
     acctgcgatt aaattgtttc atctacgaaa ctctctcgtg ggtgcggcaa gcggcattat       900
     tgaccaagat atagtgaata ataatgacta tgatgccgca tggacgtttc tcacgaatcg       960
     atatgaagat aaacgtctta tcatggataa acacattgaa gcattgacga atcttccgaa      1020
     agtcactaag gacagttcta aggacatgcg aaagttgatc gatacctgca caaaaaatgt      1080
     agaggccctc aagaatctgg cactgccggt tgccggcctg ggagagcaaa tgctacttca      1140
     ccaaatctca tcgaagttgg acaagagcac cagagtagct tgggaaggac gacagaagaa      1200
     gggcgtgtac ccgacgtacg atgcgacgat cgacttcctg caagagcaat gccgaatcat      1260
     ggagaagatt gacgtcaaca ctaaaccacc gatggaaagt gtgaaggtga aatcagtaaa      1320
     taaaagccac tcgttggtgg ctacaaatga acagaaaaaa gacaataagt gcttaatgtg      1380
     taaaaacatt cacgaactct ggaggtgtga tcaattcaaa caaatgaatg tgagtgataa      1440
     atacagtgtt ttgaaaaaat ggggctcatg cttcaattgc ctacaaaaag gtcaccgcac      1500
     gaacacatgc ccttcctcgc ataactgtca cgattgtggc aaacgtcatc atacattgct      1560
     acataatgac agtcacccga acactgtcac gaaggaaaca gcggtgaaac cgagcaacga      1620
     aacgcaaccg atgaaaccaa gttctagtcc cgaagtcgcc tcttcgggat cagccacaac      1680
     tttgtgttcc agtaccgctt cttcgtccaa gcagattctg ctttcaaccg ctatcgtaat      1740
     ggttcatgga atcagcagtg cactctaccc ttgtcgagta ttgttggact cggcctcgca      1800
     gacgcacttc gtcacggaaa gattcgcgac gtcacagcga aaggaatccg tcgactactt      1860
     ggttagcggt ttaaatggca gcaacacgcg tctacggcgc cggattcgca caactgtgaa      1920
     gtcttgtgat ggaagtttcg ccacggagtt ggatttcttg attgctcccc gaatcacaag      1980
     cgacgttcct gcgaaatcgc ttgatgtctc tggctggcca ataccggatg aaattaaatt      2040
     ggctgacccc acattctata ggaaaggacg catcgatatg ttgattggat cggaagtatt      2100
     ttgggacttg ctgaagaatg atcgaatacg ccttggaccc aaccttccaa tattgacgaa      2160
     aacggatttt ggatggatcg ttggaggcgt ccttgaagag gaaggtccaa tcattgctcg      2220
     ctcgttgtgt caaaccacag acgaagagcg actcgaagat ttgttgaaag gtttctatcg      2280
     catagagtct tgcgacgagt cccaaacggc caccaccaaa agcgacgaag aatgtttgga      2340
     acatttcaag caaactcact atcggaacga taaagggaga tactttgttc gacacccttt      2400
     caacgtgcgt atcaatctac tgggtgactc tctagaaacg gcaacacgca gattcctgaa      2460
     ccttgagcga cgtctggacc gagagccgga actgaagctg caatactcca ccttcctcga      2520
     tgaatacgca agactcggcc acatgcaagc aatcgaagta gatcagtccg ccgatccagg      2580
     atccatgttt tacctttcgc atcactgcgt gctaaaaccg acaagcacta caacgaaatt      2640
     aagagtagtg tttgacggat cagcaaagag ttcaacaggc gtgtctatca acgatacact      2700
     agaagcaggc ccggtagttc agcgagactt gacgtcgatt ttaataaatt ttcgtggata      2760
     ccggtatgtg ctgaccgtcg acattcctat gatgttccga caagttggag tggcatttcc      2820
     cgatactcga tatcaactaa ttctgtggcg aaagaacaag gaggagccgc tgactacgtg      2880
     ggagttgcga acagtgacgt acggcttggc gccgtcacct tttcaagcta cgatggccct      2940
     aaatcaagtt tctgaagacc attatgatga atttccggaa gcggcatgtg ccattaagaa      3000
     gggcacatac atggatgata tactgacggg ggcggatacg gtatcgaaga tctgcaagct      3060
     gcaagatgat atgaccaatc ttctctcgaa aggctgcttt ggaacccata agtggtgctc      3120
     gaacgcgaaa gaagtgatgg atcgcgttcc cgaagagttt cggggaatcg actttgaagt      3180
     aaacggcgac aacctgaatg caaccgtgaa aactctaggt gtaacatgga atcctagaga      3240
     cgactggttt tctttccgtg ttcctgtcag cgatccagac acctgtacca gaagacaaat      3300
     tctcagcgag gtagcaagaa tcttcgaccc attaggactc attgggccgg tcattacatc      3360
     cgcaaagctc atactacgag aagtatcatt gctgcagaca ggctgggatg aaccagtttc      3420
     acaggacttg cttcaaacct ggcgatcgtt tcgaaatgaa ttagtacagc tgaatgagct      3480
     acaggtccca agatggattt cgtccgtcgg tgcgattaca gtgaagttgc acgggttttc      3540
     cgacgcatct gatcacgcct atggtgcgtg tgtgtgtata cccgtataat tcgccatggc      3600
     gcagaagcta cgatgcactt gatttctagc aaatcaagaa tccttccaaa aaagaccggt      3660
     aagtctaaac ctatatcgac tccccgagca gaactgcttg cagctgtgca actctccagg      3720
     ttgatagata aagtgttgca cgctatcgat ctgaaagtgg atacggtaaa cctctggacg      3780
     gattccaaaa tcgtttactg ttggataaaa aaatctccgc aaagtcttca aatatatgtt      3840
     tccaaccgag ttgcggaaat tcaaaggctt actggacatt tccggtggcg tcatatacga      3900
     actagcgaaa atcctgctga ctccatatca cgaggtcagc gaccacggga cttgatgaag      3960
     aacgaaattt ggtggaaggg tccgccaatg ctgaggacga tgaccgaaac cgatgaagag      4020
     cccgaactat ccgacgcaga actgccggaa ttgcgaacaa gcctaacgat gacgtccagg      4080
     atcccgaaaa gattggagat atttgacaga ttgagcagtt tcgacaaatt gcagcaatcc      4140
     atggcctacg ttgttaggtt tgcaaattac atcgtatcga agcgaaaact gatcaccaag      4200
     ggaccaccca catcagcaga aagagcgcag gcgttaattt tgatggtacg attggtgcaa      4260
     caggaatgtt tccagtcaga gattcaggcg ctgaaagaaa atagtgggtc gaagcatcgt      4320
     ctgtgtagcc tcaaaccatt tttggattca gaggatggga tattgagagt cgggggcaga      4380
     attaagcacg ccttcatccc ttatgacagt cgacatcaga tgttgctccc ggcgaaacac      4440
     cctttcacag aagcactcat cagaagccag cataacacca atatgcacat aggacagaaa      4500
     ggccttctgg ctatcatcag acagcgtttt tggccattga acgtgaagac aaccattcga      4560
     aagattattc gaaattgcac tacttgtttc aaggctaatc ctgtgagaac cgaacaactg      4620
     atgggtgatt tgccgtcgta ccgcgtacga ccagcaccaa cgttctccaa caccggtgtg      4680
     gattttgcag gtccatttct gcttaaatca acatcagtag gacgaaagcc gttgatcacg      4740
     aaagcgtacg tatgcttgtt tgtgtgtatg ttaacacgtg ccatacatat cgagctcgtc      4800
     tcagatttaa cgaccgatgc gtttctcgcc gcacttcgac gattcactag tcggcgtgga      4860
     attccgaaca aaatgttctc agataatgcg accaatttca ttggcgcaca cagtgaactg      4920
     gaaagattgg cacaaatgtt caaggaccaa catgaaaatc agaagatcgt cgaattctgc      4980
     tgcaagcttg gtttcgaatg gtcgtttatc ccacctagga gcccccattt cgggggtatc      5040
     tgggaggctg gggtgaaaca agttaaatat cacctcacta gagtagttgg agacagaaag      5100
     ctcacctacg aagaactcta cacaactttg acgcagatag aagcagtgct aaattcacga      5160
     ccattagcac cttcttcaga tgaccctaat gatttttctg caataacgcc agctcatttc      5220
     ctcattgggc gagaaatgca agcagtggca gagccattat atttgaatct acgcgaatcg      5280
     acattatcac gttggcagct agtccagact atgctgcagc acttttggaa gcgatggata      5340
     accgagtgtt tgccagaact acagattcga tccaaatggc tgaagcgaaa ggacattcca      5400
     ttgggtgcac tagttctcgt cgtggatcaa aacgctccac ctttacattg gcagcttggg      5460
     aggataacag cgctacatcc tggacccgat ggagttacgc gagtcgtatc attgaggacc      5520
     tcgaagggcg actacaagcg cgccgttagc gaaatttgtc tgctaccgtt ggacatggac      5580
     aaggatagtt gaaacgattt caacgccggg gtgga                                 5615
//
ID   BEL-892_AA-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   02-JAN-2019 (Rel. 25.10, Created)
DT   02-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-892_AA-I;
KW   BEL-892_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-223
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-223
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2971-2971 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 223 BP; 47 A; 46 C; 42 G; 81 T; 7 other;
     tgttggttga attttgaaca cccctatttt ctttctcttg atgttwgcga cgattgtttt        60
     tgttcttatt tttattccac ttttgctgaa ctgactcgtt gttcaawaaa mcagtastat       120
     accatmactc gtgaaaatta gccgcgtgtt tgatgtgttc tcgaagamcc gaaacgttcc       180
     gaaattckta agcgtttaca gtccgctgct cccggctggg aca                         223
//
ID   BEL-893_AA-I repbase;    DNA;    INV; 5902 BP.
XX
AC   .
XX
DT   07-JAN-2019 (Rel. 25.10, Created)
DT   07-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-893_;
KW   BEL-893_AA-I; BEL-893_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5902
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5902
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-JAN-2019).
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 5902 BP; 1610 A; 1321 C; 1433 G; 1538 T; 0 other;
     taaattggtc cttcgaaccg gatcggttgt ggctgctgtc gagtgaaagc gttcgcgtgg        60
     cttggacaac gcgagaccaa aagtgtaaag tgtttccata agcgttcacg tggctttgac       120
     aacgtgaagt aaagtgtccg tgatatccgc gagtgtgtaa ccgtcgccgc gtagtgtttg       180
     atccgtcgct ccggacttcg tgtgttgttt aatccatccg gtttgacagt cgcgccggtt       240
     tacctagctg gtattcctat aatttgttaa acccgacgtc gcgtagtgtg ttttctccgt       300
     cgctccggaa ttattgtgta gtgattccat ccggttcgac aagcgtgtcg gtttccgtga       360
     aattcctcca agtgattgag tccaccgtcg cgtagtgtgc ttacctcgtc gcttcggaat       420
     tattgtgtta gtgattccat ccgttgtgcc gagcgcgtcg gtttccgtga ttgtggcctg       480
     ctttcgtgta gttcaatccg tcgtagcggc atttgtgtga cagtattcca ccgtcacgac       540
     aactgcagga ctattttccg ttctaaaagt gacattcttt ccacatttga caagtgttca       600
     aatccatccc gttacgaagt gataaatcac attcaagcaa gaagatgggt aactcggatg       660
     atgtgagatt gctaatccta aaacgcggcc aagtaaaggc taaagtgacg cgcatcttca       720
     acactttgaa tgcggcaaat caaagaggtc agcatccatc cttgccgcaa cttcgagtct       780
     actccaagca gctgaatacc atctaccagg aatacaatga cacgcacgac atggtgatgg       840
     cagccattcc agaagaaagt gtagaagacc aagatgaaaa atatgtggaa tttgaaagcc       900
     ttttcaacga aacatcgacc atggttgaag cgatgatcga agccgtagag agagaaaatc       960
     gtgtatcgtc gcctagccca acgtccgctg gcattcttcc ggctcaacag ccgatcgtcg      1020
     tccagtcgca atccttccgt gctcccttac caacctttga tggccggtat gaagcatggc      1080
     cgcgcttcaa ggctatgttt caagacctga tgcaacgttc gactgattca gatgccgtaa      1140
     agctttacca tctggagaac tcgttgaagg gagatgctgc tggtgtaatt gatctggaaa      1200
     ccctacagaa caacaattac cagcgagcgt gggacattct ggaagaacgg ttcggcaacc      1260
     aacgtttgat attggagtca cacatcctcg gcatcctgag cctgaagaaa atggcgaaga      1320
     agtcgtcgaa agatcttcgc aatctcatcg aagaatgtac tcgtcacgtg gaaaacctcg      1380
     tcaagctcaa tcaaccgctt acaggaatgt cggagctgct agtggtgact gtgttgactc      1440
     gagcattgga tgaccagacc cgtgagctat gggaagcttc cattaaccag acagaacttc      1500
     ctagatacga gccgaccata gagttcttga aacagcgttg tgttattctg gagcgctgtg      1560
     agaagagtgt atccagtcca tctaacccaa aggcgttgag tccgaagatt ccagtaccca      1620
     aagcacagtc cttcaaatca tcacacgcag cgtcagttcc atcggaatac gtgtgcgata      1680
     tttgttcagg acagcatcaa aactacaagt gttccgtatt ccacaaattg tccgtggatc      1740
     gacgatatgc gaagttaaag gaggtgaact tgtgctttaa ttgtttgagg aagggtcatc      1800
     gcagcgcaac gtgttccaga gataaattgt gtgccaagtg ctcgaagaag catcacacgt      1860
     tgctgcatta cgagcgtgag attgccgaag tgacgaccaa tgatttgcca aagcgtccat      1920
     aagttaaccc agtttctgca gcgatcgagc aacctgtgaa ctcttcgtgt tctagcagcg      1980
     tacctccatc cggtaagcag gtctttctta tgactgcgat ggtcagccta gcggcgcgca      2040
     atggtaaacg ccatcatgtg cgagccttat tggattctgg gtcacagatt aacatcctcg      2100
     ctgattctgt ggttcaaagg ttgaagctac cgaaatatcc agcaaacgtt ccagttatct      2160
     gcgttggtgg agcccgatcc cagatgcacc ataaggtggt ggtgcatatg acgtcgaatt      2220
     ttagcgactt tgccgccaac gtagagtgcc atactgttcc aaaggtgact ggcacaaccc      2280
     cctcggtttg tgtgaatact gattcttgga acattcctcc tggtatcgta ttggccgatg      2340
     cttccttcca ttgcccaagt gaaatcgaaa tgattattgg cgccgaactg tttttcgaag      2400
     ttttaaaaca gggacagatt aagttggctg atcgtctacc atcgctgtat gaaacgcagt      2460
     ttggatgggt tgttgccggt tcctacgaag agaaggagga gaataacagc cccgtatgtg      2520
     cgaatatggc cgtgaaggat ggattggaga gatgcctaga gcgattcttc aatcaggaag      2580
     aaattgctgt gccagacatg atcacaacag aagaacatcg ctttgaagag catttcagac      2640
     aaacttatca tcgcgatgcg agtggacgat ttgtggtcaa ttaacctttc cgtgattgcg      2700
     tcagtcaatc aggaaactca agatccctcg cgatgaaacg gtttttgctt ctcgagaaga      2760
     aattagctcg aaacccagac ctgaagattc agtatgcaga gttcatacag gaataccaag      2820
     ctcttggaca ttgtcgggaa gtaaaagagg aagaagatcc acccggcatc caggtgtact      2880
     acttaccaca ccactgtatt ctgaagccgt ccagtagtag cactaaattg cgtgtagtgt      2940
     ttgatgccac agcaaaggta aacggcttag ccctgaacga tgtgctgatg actggaccaa      3000
     atagccaaag tgacctgttt accatcgtga tgcgttttcg tacccacctc atcgtgttct      3060
     cagcggatgt gtcgaagatg tacaggcaga tattgataga tccatcccaa acgcgatatc      3120
     agcgtatatt ctggcgtact catcccactg aaacgctgag agttctggag cttctaaccg      3180
     taacctacgg aacatcggcg gcctcgttcc ttgctgtgcg gtctctcata caattagcgc      3240
     gggaagagag cgcaaacttt ccagaagctg ctcaggttat tctgtatgat tcctatatgg      3300
     atgatatcct ctctggcgct gattccgttg aatcggcgat gaagttacgg catgacgttg      3360
     aagagcttat gaggaaagga ggatttccat tgaggaaatg gtgctcaaac tcagaggagc      3420
     tgatgtcaag cgttcccgag gacaaccgtg aaaggttagt gccgattcaa gattcaagca      3480
     ccaatgaggc aataaaggca ttaggactct tatgggatcc aaggcgagat tttttcctgt      3540
     ttcgacaagc ttccgattca attatccctg gaccagtaac caagcgaagt gttctatccc      3600
     aaatcgcgag attgtttgat cctttggggc tcattgcacc agtgattgtt gaagcaaaaa      3660
     tgataatgca gtgtttatgg gctagcagtc taggatggga cgatctcctt gaaggtgagc      3720
     tgctacaacg ttggataaat tttcggacat ccttgaatga tatatctggc cttgagatcc      3780
     ctaggtgcgt cgtgattcca gaaagacagg caattgagct tcatggattt gcagatgctt      3840
     cccagggtgc atacggagca tgcatataca ttcgctgcat ccaaagtgat ggttctgctg      3900
     tagctcatct cctgtgtagc aagtccaagg tagctcctct gcgcaatatg accattccaa      3960
     gactcgagct atgcgcggcc ttgttgcttt ccaagctgat cgccaaggtg atttcaactg      4020
     ttaaactgtc catcattgaa gtgagactgt ggtccgacag tcaaatagtg ttggcttggt      4080
     taaaaaagcc cttggatcgt ttacaagtat acgtacgcaa tcgagtagct gagatcaatc      4140
     agttgaccga taaatatcac tggtgttacg tgaacactac cttcaatccg gcagatattg      4200
     tgtcacgagg tatgaaacca gcctttttga agagttgcag tatgtggtgg aatggtcctg      4260
     tttttctcag ttcatcggat tacaaaacgg agacgattgg agacatacct gaatctgaaa      4320
     ttcccgaatt gaaggatgtg atggttgcca gttcagccgt aagaatgccg catgatcccg      4380
     tgtttcagcg cttcagttcc ttcaacaaat tgcagcgtgt tttagctcaa gtggttcgat      4440
     tcgttcgttt gatgcgaacg ccaagagatc aaagaagtaa gtctaatatg ctgtccaatc      4500
     aagatatgcg aaaggctatg atgtacatag ttcgcgaact acaacaaagc gaatttaaag      4560
     aggagatcct aagtatacaa atgggtgaat tacctaagag gatcgctcat ttacaaccgt      4620
     ttatcgacaa tgatggtctc ttgcgagttg gtggacggtt gcaaaactcg atgctacctt      4680
     tcgatgccaa acatcaacta atgctccctc gacgacaccg agtcacggag atgctgataa      4740
     ggaaatatca cgaagaaaga cttcatgagg gacaatctgg attattagca accatacgac      4800
     agaagttttg gatcacgaat gcgcgatccg ttatacggaa ggtaattcac acttgtgtaa      4860
     ggtgttttcg aacaaagcca cgaagcatcc aacctttgat gggtgttcta cctgaagcac      4920
     gagtaaccgt gaaccttccg ttcgagctaa cgggagttga ttatgctgga ccagttttcg      4980
     taaaggaagg tagacataag cctaaaattg tgaaagcgta tatatcttta ttcgtgtgcc      5040
     tagtgacaaa ggctattcac ctcgaactag tctcagacct aacatcggat gcctttcttg      5100
     ccgcactgga ccgtttcatc aatcgccgag gcctagttcg gaagatattt tcggacaatg      5160
     ggacaaattt tgtcggggct gcgaaagaac ttcgacatct gcggagtatg ttcaccaatg      5220
     aaaaggaaag gatgaaaatt aacgattttc tgatccaacg agaaattgac tggcaattca      5280
     tcccacctag atcgccgaac ttcggtgggc tatgggaggc tggcgtaaag atagtgaagg      5340
     ctcatcttac gaggacgctt ggaaatgcag ctttatcgtt cgagcaattc aacacagtgc      5400
     taactcacat cgaagctatt gttaattccc gaccactata ctcaacatcg gatgatccaa      5460
     acgacccaca accaataacg ccagcacatt tgatgcttgg tcgaccatta gaaccagtta      5520
     ccaagccatc gcatttggat gttccagcaa atcgtttatc aaaatggcaa tatctgaatc      5580
     agctaagaga tcatttttgg aagagatggt ctcgtgaata tctctcaact ctgcaatcga      5640
     gagcaaaatg gacgaaaaaa caacctaaca tcgaagtcga caccatcgtt ttgctgaacg      5700
     aagataatca accagctcaa gtttggaaat taggaaggat agtcgccgtt tacccaggaa      5760
     aggatggcat tgtacgggtc gctgatgtca aaaccgcttc aggagtgttt cgtcgagccg      5820
     ttagtaagtt ggcatcgctt cccttgcaag acaacgagca ttacacatta gacttggaat      5880
     tgtattccaa cgggcgggag ta                                               5902
//
ID   BEL-893_AA-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   .
XX
DT   07-JAN-2019 (Rel. 25.10, Created)
DT   07-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-893_AA-I;
KW   BEL-893_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-462
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-462
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3023-3023 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 462 BP; 131 A; 104 C; 92 G; 135 T; 0 other;
     tgttcgcgaa acttcgctcc cagcggaaac agcagttcga gaacattcca accataccta        60
     gaacattcga gaacattcct tttatgcgtc acgtcacgtg ctcgaatatc ccagaaaatc       120
     tcgaatattc cattttattt gtagtcatgc ttctggaata ttctggaatt gcatacttta       180
     aggcgtattc gcaatataaa taaggcgtgc ctgcgagccg ccagtcagtt tgattccaac       240
     tatccgcgag ataacatcga gtgtgataaa ggtgaaataa ataccaagca gcagcaagtg       300
     aagtgtaaat agttagtgca gagagaaata aagtagtgtg tttaagtaac ccagtgttgt       360
     gatttgttga aatccattcc ctggtgtatt cccgtttctt tctgccgctc cgcaacccag       420
     tccattgctt cgcctgtaaa ttcttatgtt cattcccgaa ca                          462
//
ID   BEL-894_AA-I repbase;    DNA;    INV; 6218 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 25.10, Created)
DT   22-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-894_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6218
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6218
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6218 BP; 1778 A; 1450 C; 1540 G; 1450 T; 0 other;
     aattctttaa gaaatttgta agggtatcga aagtatggac cgcagcgatt cccctcgaaa        60
     ttgccaatca tgttcccgta aggattccgt ggaaggtgag atggtgcaat gcgattcatg       120
     caagctctgg gagcacttcg gatgtgccgg tgtcgacggg caggtgcgaa gatcagatgt       180
     caggtatata tgcaaacgat gtggaagtcc aggggtctcc tacggccacc tcaaggtccc       240
     tgctaccgat tcacgttcca ggggagcgaa ggcgggttcg aaaacgagct ccaagtcggg       300
     ctcaaaaaag gggaagaaga ctctcgatcc caccggtagt gtgacatcca gtgtacgcgc       360
     ggctatgttg gcgcaacagt taaaactcat cgaagaggaa caatcattgc aagaacaaga       420
     gctcaaagat caggaagaaa ttcgcaaacg tctactggaa gaagaagagc gccagttgga       480
     agaaaaaaga aatctcgcgg aggaggcaaa gcaaattcgc gagcgtaagc tgcaggacga       540
     actggacgcg aaacgtaagc aacaacaagt gagaagggaa tcgttcgaga agcgacagga       600
     aatcataagg cagatggccg aagcgagcag cggaagtgga tcgatggtta gttctaggca       660
     aaaggtgcat aactggctga atgatcaaga cgatgctgga cgatctgatg gaaatcatat       720
     tggaagtgct atccaatcca atattactcg gatttctgga gacccacggg aaaatcttgc       780
     tcagtcacat atgtcggcgc caccagatac tttcaacgca cggccaacgt tcgttgtacc       840
     gcctgaatcg gttcctctgg aaacttctca tgcaatccta cccgcaagga cactgtcaca       900
     ggctcaaatc gctgctagac aggttttggg gaaggatcta ccagcctttg acggaaaccc       960
     tgagaactgg ccgatcttca taagtaacta cgaccagtcg acggcgacct gtggttactc      1020
     ggaagcagaa aacctggttc gactacagcg agcattgaag ggaaatgctt tggaagcagt      1080
     gaaaagccga ttactccttc cggccagcgt tccgcatgtt atccagacct tgcgtactct      1140
     cttcggaagg ccggaactcc ttattcgatc catgttgagc aatattcatc aaattccacc      1200
     tccaagacac gaccggctcg agaccattat gcactttgga ctggcggtgc aaaatctggt      1260
     tgaccacctt aaggcagcaa accaattcaa tcatttagca aatccggtac ttatgcagga      1320
     acttgtggaa aagctgcctg gttccctgcg actcgactgg gtaaagttta aaactcaaca      1380
     ccaaactgcg acactcgaaa cgtttgggga attcatgtcg ggattggtaa cggcagcaag      1440
     tgagtagggc tgtgcacaag gacgatttat cggtatcggc gatatccaat tgattgaata      1500
     tcggtatcgg cgatatatcg gatttgttat cggtatcgaa ccgatactcg ataattttta      1560
     ataaagggat tttcaagcaa tatcgactat tctggcttca tttgacacca actgtttttt      1620
     tatgaagtca aatatttgaa ctttgtaatt atgatatgtt acatttaacg gatatctaca      1680
     attccgttaa actagtttta acaaaatcat tgagtgttgt cctaattatc ggacagacaa      1740
     tagttttatc gatatcggaa aacatcgggt cgccaaatat cggatatcgt atcgataaaa      1800
     tcgagccgat aatatcgata ttatcgataa tatcgatatt tgcacagccc tacaagtgag      1860
     gtctccttca ctctaccggg gcttagtaca agccagaaac acactgtcac gatggattct      1920
     cgaagtggca gacaaaagag cggaaatgtg gtggtgctgc aaactcattc aacagaagaa      1980
     aatcgaatga ctggcctcgt cactactcca acaagtacta aacctacaaa acaatgtgcg      2040
     gcatgcggac gagcaggtca caaggtggct gaatgtcagc agttcattgc agccagtgtc      2100
     gacgagcgtt ggacactgat tcagcagaaa gggctctgtc gaacctgctt aaataaccat      2160
     ggtaaatggc cttgcaggtc atggagtgga tgtgggatcg acaactgccg tcaaaaacat      2220
     cacagtcttc tccattctca taccacttcg gaggcagtaa atgtctctcc gagccacgtc      2280
     acttccggaa actttcaatg gccacttttt cggatcgttc cggtagtgtt atatggtcgt      2340
     gactcttctc agacggtcta cgccttcatc gacgaaggtt cgtcttacac tcttctagag      2400
     gattctgtcg ccaagcagct aggtgttact ggcgaagcag aaccgttaac actgaagtgg      2460
     acggggaatg taacaagggt cgattgtgaa gcttgacatc tccggcaagg gcgtcaactc      2520
     ccgatacacg ctcgctcacg ctcgcacggt gggccgtttg gtattaccca cccaaacctt      2580
     gaggtaccag gaattagcgc aacgtttccc gcatttgcga ggattgccga tagaggatta      2640
     cgaattagtc cagccaaaaa tactcattgg tttggacaat ctcagattgg gcgtcccact      2700
     aaaactacga gaaggtggtt cgttagatcc catcggggca aagtgccgtt tagggtggag      2760
     cgtttatggc tgtatcccaa accaagcatc tcattctgcg attgttggat tccacgtagc      2820
     tgcagcctct aactcggatc aggaaatgaa cgatcaactc cgggactatt tcactttaga      2880
     agatatcggg gtaacggagc gagattattc tgtcgattca atggaggagc aacgggcaaa      2940
     gcaactgctg aaggatacaa cacgacgcac gcagtcggga tcaaactttg aaacgggctt      3000
     gctatggaag aatgaggatc cggattttcc cgacagtttc ccgatggccg tccgtcgcct      3060
     ggaatcgctc gaacgtcggc ttagccatga accggagttg caaaagtgtg tgcatgacca      3120
     gatcaaggaa tatgaacgca agggttatgc ccaccgagcc agtttattgg aattgacatc      3180
     ggtagactca aaacgtgtgt ggtatcttcc actaggcgtg gttaccaatc ccagaaaacc      3240
     tgggaaagtg agattgatct gggacgcagc tgcaaaagta ggtaacacgt cattcaactc      3300
     acagcttctc aaggggcctg acctcttgac accgcttccc aaagttctct atcaattccg      3360
     acaatacccg gtggctgtaa ccggggatgt aatggaaatg ttccatcaga ttaaaatccg      3420
     caaaccagac tgccagtctc aaagattcct gttcagagag caggaaacag acccgcctag      3480
     gatatatgtg atggacgtcg ctactttcgg atctacctgc tcaccggcgt cggcgcaata      3540
     cataaaaaac ctgaatgcag aagagttcgc cgaagaatgt cctcgagcag tagcagcgat      3600
     catccataag cattatgtcg atgactatct ggatagcttc gagacgatat ccgaagccgt      3660
     gagcgtcgtg aacgatgtga aacttgtaca ttcgaaaggt ggtttcactc ttcgtcgatt      3720
     tctctccaat gaacccgacg ttttgcacgg tttaggagaa gcggtacaaa tggaatcgaa      3780
     gaacctggaa ttggaacggg ctggaaaggt cgagtcagta ttaggaatga aatggatccc      3840
     gaatgaagac gtgttcgttt acaccttcgg cgctcgtgaa gaaatttttc gaatcctgga      3900
     caacagtcac attcctacga aacgagaagt agccagagta gtcatgagtc tgtttgatcc      3960
     cctcggccta atctcgtttc ttctggtgca tggaaaagta ttaatccaag aactatggct      4020
     aaaaggcaca gattgggacg aacgaattcc tcaagatacc aacagccgtt ggcaacaatg      4080
     gactaattca ctacagcaat tggaacgact ggaaattccg cgatactact tccctcaatc      4140
     tcttcctaaa aacttgttcc gtttacaaat tcatctattt gtagatgcga gcgacgcagc      4200
     gtacgcagcg tacgcagccg tggtttactt ccgtttgcag accgagcaaa ctacaaaagt      4260
     agcactcgtc ggagcaaaaa ccaaagttgc gcccctaaaa gctctctcta tcccaagact      4320
     tgagctgaaa gcagcggtcc tcggcactcg cttgatggaa acaatccaaa gccagctctc      4380
     atacccgatt agccaacgct tctgctggac ggatgcaaac actgttctag catggattcg      4440
     tgctcctgat catcgacgat atcacaaatt tgtggcggtt cgagtcgggg aaattttatc      4500
     gtccacgcag caatcggaat ggcgatggat accatcgaaa ctgaacgtgg cggatctggc      4560
     cactaaatgg aacaacggag ctcaggagat gatcaacagt caatggtttc aaggtccttc      4620
     tttcttgtac gaactcgaag aacactggcc cagacagaaa tcaaacgcca ttactgacga      4680
     agaacttcgc ccagtgcacc taaacctagc acacttctcc tcaagcatag aattcgaaag      4740
     gttcaatcgg tggtccaagc tccttcgcgt ggcggcttac gtgtttcgtt ggattgacaa      4800
     tctcagaagg catagagatg ggaaagatct ggagctcggc tgcctcacca gcaatgaact      4860
     acatcgagct gaagaagcgt tgatgaaaac gacgcaaagc gaatcttatc cagatgaaat      4920
     caacatcctc aacaaaaccc aaggatcact tgagaaccga cattcgacgg tgaagaaatc      4980
     tagtgtcatc tacaaaaagt acccattcat tgacaagcta ggaatactgc gaagtagagg      5040
     ccgaattggt gcagcaccat acgcaccaat ggacgccaaa tttccgatca ttctttctaa      5100
     gcaccacgtt atcactttcc taattgttga ttggtatcac cgccactgtc gacacgccaa      5160
     ccgagaaact gtattcaatg aaatacgcca acgatttgaa atatctggac ttcgacggct      5220
     gctagataaa gttgtcgggg cctgtaccct ttgtcgcgtt gcaaaagcag caccaagggc      5280
     gcctgttatg gcgccgcttc cgaaaatgcg tttgacagcg ttcatccaac ccttcactca      5340
     taccggccag gattatttcg gaccactact ggtaaaggtg gacagaagca acgtgaagcg      5400
     ctgggtagct ctgttcactt gcctcaccgt acgagcggta catctcgagg tagtacactc      5460
     gttgagtact gcatcctgca taatggcagt ccaaaggttt gtagcacgca gaggtcaacc      5520
     aagggagttc tggtctgaca atgctacctg ctttcaaggt actagcaatg aaataaagat      5580
     gcacaacaaa agtttagcaa aaaagtttac ttcccctcaa tgcacgtgga aatttatacc      5640
     gcccgctgct ccccatatgg gaggtgcttg ggagagactt gtgcgatcgg taaaggtagc      5700
     tatcggagct gtgatggaag cttcacgcaa gccagacgat gagaccctgg aaactatttt      5760
     aacagaagcg gaaggaatga tcaactcgag ggcgcttaca tacgtcccct tagagtctgc      5820
     tgaccaggag gctttgacac ccaaccattt cctgttgggc aattcttctg gttcaaaatt      5880
     cttgtctacc gagtcatcga acagccaagc aacattgaga aacagttgga agctagctag      5940
     gcacattacg gatgagtttt ggcgacgatg gctcaaagag tacttaccag tgataactcg      6000
     aagaagcaag tggttcgagg acgtgaagga gctagaagtc ggcgacgtag tgttggtggt      6060
     cgaaggaaca gctaagtgct agtgggtgcg aggacgaatt gaagaagtgt ttcctggacg      6120
     agacggaaga gtccggcaag cactagtacg aacgtcgtca ggagttctac gaagagcagc      6180
     gtcaaaacta gctgtgctcg acgtcgcggg cgggggta                              6218
//
ID   BEL-894_AA-LTR repbase;    DNA;    INV; 544 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 25.10, Created)
DT   22-DEC-2018 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-894_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-544
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-544
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3179-3179 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 544 BP; 199 A; 107 C; 79 G; 159 T; 0 other;
     tgttgcgacg aaaaccctta ccacggtaac actgttgagt cgtacactta gttcacccta        60
     ttgcgaacaa ccgagaaccg tcatcagatg tgaacaacag aaaaccacaa caatcggtcg       120
     ccagttattc atagtcgatt ttcgttacat ctaattatct atccaacggt gaaattatcc       180
     tattcatgaa aaatagttca tcatacttat actactattt acagttattt acagttctta       240
     aacctaatcg tacaaactac agtgcaaatt ataatactta agaataagca atcactattg       300
     taagtacgac atgcaacgta attgaactta tctaactaat gttgttatga actagatcca       360
     cgttattcga ggtgggaatt cactgcaatc cagtaccact ttcagagtag gaacaccaaa       420
     tttgtaagta aattaaatct aatgaaaatg aaaataagtg aattcaataa aatcctattt       480
     gtagcttaaa gcacaccaat atacaaaagt gtttgctaaa ccgagttggt gacttaacct       540
     aaca                                                                    544
//
ID   BEL-895_AA-I repbase;    DNA;    INV; 6097 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-895_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6097
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6097
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6097 BP; 1774 A; 1379 C; 1494 G; 1450 T; 0 other;
     ttctttaaga attcatctgt tggattgtga catcaaataa agatggctga gaataatacg        60
     aacggtgatc ggaattgcac ccgatgtagt aaatcggact cggcagacaa catggtagga       120
     tgcgacctct gtgatgtgtg ggtacacttt ggatgtgccg gagtaactac ttcagtggaa       180
     aatcgcagtt ggaaatgtga taactgcaag gacaaggttc tggaagctgc cagtaaagca       240
     tcaaaatcct cgaaaaccag ttctggaagt gttaaaaagt cccaccgcat tcgataccaa       300
     ctgcaaatga tggaggaaca acgtcagttg cgactaaagc agttggaaga agaagaggcc       360
     gctcgtcaaa aatgagcaca agaagaagct gagttcattc gacagaaata cacgttgctg       420
     atggattgcg attcagacga gtccgccagc gatcataatg atcaggataa tctggatgtt       480
     caaggaaaca ttgagaaatg gctgaatcaa gggccaaatg agggattgtc atcgatagta       540
     cctccaacaa ccacaaccgc gggacagact caacaacaaa ccgtttccat gacgtcaact       600
     caaaaccagg ttttctcagt ggcccaggaa agtgtcagga aagctagtga gactgcggtg       660
     ccaacctcta cttccacgcc gcaggcctac aggaattcgg tactgattcc catcgatggt       720
     tctaggtcga gatttgcgcc tgaaacgatg atgtcgttca atcagagtca actccagcaa       780
     attgatgctt caatgagaac cttgaataca ggtgcaagcg cgccgtgcaa catcgatttg       840
     cccaaagtgc caacggtttc attcaatcca caagtttctt acgtggcaaa tcctagaacg       900
     aacgtgtatt cgacgtggac atcctgcttc aatacgatgc ctggatacaa cactgtgccg       960
     acgctgcctc atcaatcgaa caacgcaagt gcacagtatc cggctcatac aactggacag      1020
     ggaaactcca atgcgaatac actcggtccc agcggtgctg agaattacga tggatcgcaa      1080
     tgggatagta ggaatcaacg atacccatca ataccacaag tgaatcgcta tggagtacca      1140
     tctgacgcac aatctgggag tgtaggaccg acgccagtac agatagcggc acgacaagtg      1200
     atgcctcgtg agctaccgaa gttcaatgga gacccagagg gatggccaat gttcagtagc      1260
     gccttttata atactactca tgcatgtggt tattcgcacg cagaaaattt ggccaggtta      1320
     caacgcagtc tggaaggacc tgctctagag acggtaaaaa gccggcttct gttgccagat      1380
     tccgtgccac aagtcatgaa tacattggag aaattatacg ggagacctga aatcctgctt      1440
     cactctttac taagaaaatt gcgagatgtt ccaccaccaa aaactgaaaa tcttaggtct      1500
     ataatcgact ttgggttggc ggttcaaaac ctagtggacc atgtgacgct tgcgaggctg      1560
     acagagcatt tgagtaatcc tatgctcctc catgaacttg tggagaaact accagccttc      1620
     tggaaaatgc agtggtcaag tttcaagcag accaaaccag atgctaactt ggcaacattc      1680
     agcgaattca tgtcaggttt ggtcagtact gcatccgatg ttacccttcc agacattgca      1740
     actccgacgt catcacggtc agataggggc ggtcgtcata aatcaaaact ctttgtgcat      1800
     tctgaaactt ctcagtctgg tcagggtaat ctttcgaaag agaagaagtt cgaaccaacg      1860
     atgaagagct gtacattctg cggtcatgtg gcccacgaaa ttgctagttg cggtcaattt      1920
     aaagcgttgg atgtcgatgc tcgatggaaa gcaatgcgac aaaggggctt tgtagaatct      1980
     gccttgttcc acatcgaaag tggccttgtc gctcaggaaa agtctgcgac gtaggagatt      2040
     gtcgtctgcg tcaccacgca ctactacact cgcagctacc ttcaccttct acagtccaat      2100
     cttctcattc agctcaagcg aatgtggcac atcagaatca tcatctcgta tttccttgca      2160
     cactgttccg atacttaccg gtaacaatcg aaggaaatgg aaagacggtt cacacctacg      2220
     cctttttaga cgatggatct tcttcaactc tgcttgaagc tgcaattgcc acagaattgg      2280
     gcatagaagg cccaacagat tcactttgtc taacgtggac cggaaatgta tccagagaag      2340
     agaaacaatc acagcgtgtg tccattgtcg tgtctggtcg tggtctgaag agtcaattca      2400
     agctgagtaa cgtaaaaact gtacaagaac tgaagctgcc gagtcaaaca ctgcagtacg      2460
     agaacttgag gcaggcatat ccacacctca aaggactgcc catcgatagt tacactgaag      2520
     ctgtcccagg catgatcgtg ggagtcgaac acgtacggtt gttgtctacg ttgaagattc      2580
     gtgaaggaag agagaccgat ccagtggcag ccaaaacgcg gcttggttgg tgcgtatacg      2640
     gtaaacaggc tggtggagaa gacgttatac agcaactgag tttccatgcc gaacgggaga      2700
     atggaaatcg tgatcttcac gaactcatga aacagttttt tgaaatcgaa gaagcaagca      2760
     tcaaggtcaa gcccgaagtc gaagaggaca aaagagcgct ggacattcta cagaagacaa      2820
     cccgtaaggt caatggtgct ttcgagagcg gtctgatatg gaaatatgat cagttccaat      2880
     ttccagacag ttttcagatg gctgtaaagc gcgcaatagc gctagagaga aaattgtcga      2940
     aaaatccagt tctcaaagaa aaggtgtctg ggcagattgc tgcatatgaa gaaaaaggat      3000
     acgcacacca aataacagaa gaagaacttc tatcaacgga ttccagcaag gtatggtacc      3060
     tgcctctcgg agtcgtccaa aatcccaaca aactggagaa ggttcgcctg atttgggatg      3120
     cagctgcacg tgtcaacaag atttcattta acgatatgct gctgaaagta cctgatctgc      3180
     ttgtatcgct gtttacagta cttcttcggt tcagacagaa aaatatcgcc ttctgtggtg      3240
     acatttttca ccagatttcc atccgtagtc ctgataaaca agctcagcga ttcctattcg      3300
     aacatactcc agatcagcca ccacgaatct acgtgatgga tgtggccacg ttcggcgcaa      3360
     catgttcacc ttgtcaagcg cagtatgtga aaaataaaaa tgcagaagaa ttcgcggacc      3420
     gatttcctga ggcggctgaa gccattgtaa aggctcatta tgttgatgat tatttagaca      3480
     gtacagatac agtcgaggag gcggtccagc tactgtctga cgtcaagtat gtccactccc      3540
     aaggaggatt cgatattcgg aatttcagtt ctaattcggt agaggtagta gaacgaatgg      3600
     gggaaacaga cagtcagagt cgtaagtcga tgatgctaga tcagaaaatt gctgacatag      3660
     agagaatcct tggaatggtt tggaaacccc tgacagatgt attctctttt gatatttctc      3720
     ttaaaccggg catactcaag ctactagaag agtcaggtgc gccaaccaaa cgtgaagtac      3780
     ttcgaacagt catgtccctc tttgaccctc tagggttatt ggcacattac ataatccaag      3840
     ggaaaattct tatgcaggat atttggaggt ttggaacaga ctgggacgaa caaattacgg      3900
     acaatctcca agatcagtgg aacaggtgga gtcaattgtt gaagcaatta gataccgtcg      3960
     aagttcctag atgttttttc agtggagcaa gtaaattatc gatggatgga ctgcaggttc      4020
     acgtattcgt ggatgctagt agtgcagcgt actcctgcgt tgcctatctt cgcatcgtgg      4080
     aaagcggtgc tgctcgctgc tcgtttgttg ctgctaaaac aaaagtggca ccgttgaagc      4140
     cactttcaat accacgattg gagttacaag ccgcgatgat tggtagtcga ctagccaaca      4200
     gtgtttgtac ctctctaact ctaccgataa agcaacgatt tttgtgggcc gatagctcaa      4260
     cagttctagc atggctgcgg tccgacagcc gtcgttacca tcctttcgtg gtattcagag      4320
     tgggagaaat cctcagtttg accaccgtcg atgaatggta caaagtacga tccggcaaca      4380
     atgtcgcaga tgaagcgacg aagtggggca caggtccaca gtttggttct aacagtcgat      4440
     ggtacagagg cccctctttc ctttgggagt tagaatcaag ttggccatca gaagaaagaa      4500
     taacggcaac ctcaatcgat ctgcgtgctt cctatctaca cgtacatgca gtaaaggagt      4560
     cagtgatcga ttgcgacaga ttctctacat gggaaaaatt gttacggaca atggcatatg      4620
     tacgtcgagc tatgagctgt tttcaacgcc agaagacaac cggaatactg acgagcaaag      4680
     agttgtccgc cgcagaaaat ctactgtggc agcaggttca aatgcaatgt tatccagacg      4740
     agtacgcggc attgcactac aacaaaaacc atccagataa agaagcaatg gtcctcagta      4800
     aaacaagttg gctttacaaa cagtcaccct atctcgacaa caacggagtg attaggatga      4860
     acagcagaat tggggctgca ccaaccgccc tttttgaagc taagtatcct atcttactac      4920
     caaaggagca ccgtttaacg accttacttg tcgacagcta ccatcgacgc ttttcacacg      4980
     gcaacaacga gacggtatgt aacgagatgc gtcaacagtt cagaatccca catctacggt      5040
     ctgtaatcaa acgagtcgca cggagatgtc aacgatgccg ttttagcaaa tcagtaccct      5100
     gacctcctat tatggcttcg ctaccgcaag aacgtcttac accattcatc agaccgttca      5160
     cccacacagg tgtggactat ttcggccctt tgctggtaaa acaaggccgt agttcagtga      5220
     agcgctggat cgtgttgttc acgtgtctca ccatcagagc agtacatctg gaaatagctc      5280
     acagtctctc aacgcagtca tgtgtaatgg caattcgccg tttcatcgca cgtcgtggcg      5340
     ctcctgaaac gttctattcg gacaatggga cgaatttcgt tggggctagt cgactgttaa      5400
     gtcagcagtt gaaaggtata aacgaggatt gtgcggtaac gtttacgaac gccaggacga      5460
     gctggcggtt taatccccct ttagctcctc atatgcgtgg gccatgggag agaatggtgc      5520
     ggtcgataaa ggcagccatg gcacagatgg cagactacca acgaaaaccc aatgatgaaa      5580
     cgctagagac tgtgattctg gaggcagagt ccgttgtcaa ttctagaccc ctcacgtacg      5640
     ttccgctaga ttcggaagaa gcggaagcat taacaccaaa ccattttctg ttgtatggga      5700
     cgaagggtgt tcagcaacca cctcactcac tcgtcgatgg attgggtaat ctcagagaca      5760
     gttatacact tgcgcaaaat atggtgaata gtttctggcg gaggtgggtc attgagtacc      5820
     tcccagacct aactaggaga accaagtggc atcaaccatc gagacctttg cagctaggag      5880
     atatcgtgct agtcgtggac gaaactcgac ggaatgggtg ggttagaggc agagtcgttg      5940
     atgttctaaa ggcaaaggac ggtcaggtgc gtagtgcagc agtacgcaca gccaatggaa      6000
     taatcaagca ccccgcagta aaacttgccc ttcttgaagt ggccgatagt cagtccatgg      6060
     agattcaagg agcttcggaa ctacacggag gggggga                               6097
//
ID   BEL-895_AA-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-895_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-648
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-648
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3024-3024 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 648 BP; 198 A; 122 C; 136 G; 192 T; 0 other;
     tgttgtgaga acccctgtgc tctcatcgcc agtgcagaac gtgagctccg aacgatccat        60
     gaatcatcag ttcggggaac aatggaaccg aagcttcgag aaacgtcaga tgcagcataa       120
     atagttagaa acgtgttcag gctcagaccg catttgatcg agttgtgcgc gatacagtta       180
     acatctttct cttaattcag taaaattaaa cagcttacac agtcagtgag aacgtaagaa       240
     tttattacga ttatatcggg cacagtattc aagtagattt actctttaca gctttcaatt       300
     aagtgtccta cagtcagtga atttgccgag ttagcagtca gtttgaaaca ctcgattagt       360
     aatgtaagtt tatatgaatt aaaagaaatt agccgtcaga agctaactag tttattgtta       420
     tgtagctcag acctactttc ccagtgagac atcagccacg ggagttccgg tcagttagtg       480
     aagttgcact gaattgtaag tccgtataaa tgaaacccac tgaactgtta ctaaattatg       540
     gttaataaat ttcagcttaa agctgctact gttactgtaa ctgtattacg gttgatttgt       600
     agttgctaaa agaggtgtca tcttaatccg gaacttgccg tcggaaca                    648
//
ID   BEL-896_AA-I repbase;    DNA;    INV; 3308 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-896_;
KW   BEL-896_AA-I; BEL-896_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3308
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3308
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3020-3020 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 3308 BP; 979 A; 705 C; 805 G; 819 T; 0 other;
     aaagcttgaa gaatttactt ccaaggacac taagaaagat gcccgaaacc gacagatacg        60
     actgtaagat ttgtcatcgt tccaacaatg tcgataacat ggtgttttgt ccgaagtgtg       120
     aagactggtt tcactatcaa tgcgttggag tgaacgatgc tgtagcggac caaagttgga       180
     tgtgttccgc ctgctcgact cgcccgacag tcaacccttc gagacaaacg agtacaccta       240
     tatttgctct acctactgga gtacccgaag cgccgggact atctgctgta ctcccaccga       300
     tagtgagtac tctgtcctct gagttacctt tggctcaagc gactatcact actcgaaata       360
     tcgtaaattc gggtcagtca atactgaccg aacaagcacg ggaaagtctc cggtgggttc       420
     aagaacagcg agagttagtg gaaagagaga tggaagaaaa ccaccgatta gaattggagc       480
     gaaaaaggtt ggaactgaaa aggctcacca ataaggctat gttgggaatt ctcaacaaca       540
     cgagcgacgc tgtcatgaat agttctaacg atccagctgc tgcagtagaa gttagtacgg       600
     tagggaattg gatgcaaggg atagtcggtg agatgcagaa tctctcgatc gctcggttga       660
     gcggaaagcc agagaagtca tctatcggtc caacctttga cataagttcc acaccgacaa       720
     ctgcaggaat gcaaatgagt tcgtttgacc aaacgttgtc gccaactgtc cgaagtgttc       780
     tgaatggtca ggtgagtgta ccgcctacga ccaacctttc attcccgacg gttgtatctt       840
     cacaaatacc tgttagcata caatcagaaa tcgatcgttt tcatcaaacg aatgcgatgc       900
     aaagaaatgt ttttaatcga gtgccaccag ggctaggaat cgataaccat acgaacgtcg       960
     tgacagtttg ctcgacggtc ccaacggtag gtccggctta tactcgatgg gaaccttcaa      1020
     gtgtagcctg cggtgcgctg gttaataatc caccaacaac agttttcgcg ccccctcgat      1080
     atcatgctgg tatagttccg ggtatagttg ctagtgcaag tgctcctgtg actcaactag      1140
     caggtagcct cccacattca attcctagta tgggtttgaa ttacggagta acgggtggag      1200
     gatatggctt ccaatcactt ccggttccag agtacacgtc agctgtaaat gcgcctggtg      1260
     cattgccaat tggactcaac aacgtatcgg gtctatctag tgtgaattat ccgtttcatg      1320
     ctgggtttgg acatacggct aacgtcagcg tgggtggcgg acttcctgtc aattcaaaca      1380
     atatccacgg tttccaaagg tctcacgatt atgtgagtca gcagcaaatg cttccaacac      1440
     aacaccagtt aatggcaaga caagtcatgc ctaaagacct accatcgttc aggggtgatc      1500
     cagaagactg gccactcttt tatagcgcat atatgaattc aacgatggcg tgtggatatt      1560
     cagacgtcga gaatttggcc agactgcaga aggcgctgca gggcaaagcg ttcgatgcag      1620
     taaaaagtcg actactgctc ccagcatgcg tgccacaggt tttgtctacc ttgtacatgc      1680
     tctacggtag acctgaattg atcattcaaa cgcttttgaa caaagttcga gagactccag      1740
     ctccaaaatc agataagttg gagactctga tttcatttgg aatggttgtt caaaatctat      1800
     gtgatcattt agaagcatcg gggcagatag cacacatgtg caaccctatt ttgctgcagg      1860
     aactggtgga aaagataccg gctcatcttc gtcttgactg ggctttgtat aaacgacagt      1920
     ttgcggcagt tgatttaaga acctttgcaa catacatgtc aacactcgtg gctgcagcat      1980
     ctgatgtcac aatcaacgca gatagtagac agtcacagcc aaccagaaat gatcgtggga      2040
     aggagaaatt ttttctcaat acacattctg cagcagaaat gtcaaagaaa gactgcaagg      2100
     aggagaatat gtcaggagtt gtatgtttgg catgtaacgg tccaaatcac aaagttaagg      2160
     actgtatcgt ctttaaaaaa tgggaccccg agaatcgatg ggaaattgtc aaagaccatc      2220
     acctttgtaa aatgtgcttg ggaaaacatg gtcaacgctc ctgtaaacag caaggggttt      2280
     gcgggatgga aggatgccaa caacgacatc accctttact tcataacgga aagcataacc      2340
     aaccaattac agatgaagac acgcagctag tggacagagc taatgacggt tctggagaag      2400
     gagtaaatgc tcaccattca actggaaagt cgacactgtt ccgcattata ccagtaaaac      2460
     ttttctgggg tggaaagtct attgaaacat acgcattttt agacgacggc tcatcgatga      2520
     cgttgattga acaatccgtc gcagatcgtc tgggcataga tgatggcgag tcacttcccc      2580
     taggcttatc ttggactggt gacataaaca ggcaggttcc caactctaag cgagtatcga      2640
     tagacatatc cggcatgggt gaaagtaaac ggttcgctct gaatgatacg agaacagtta      2700
     cgaatttaca gcttcctaag caaacactaa agtacgatga attggtgcgg cagtatgctc      2760
     acctacgggg actacctatc agtagctatg attcggtgtc gcctgggatt ttaattggat      2820
     ctgataatgc aagtttgatt gcgacgttga agctgcgtga aggtgaactt ggcgatccgc      2880
     tggcagctaa aacacgattg ggttggtcta tctatggaca tgtcgccgaa gaaaggaagc      2940
     aagcgaactt cagctttcat attcgcgaat atgatagaac caatgttgaa ttcataagag      3000
     gttcatttga caatgatttg aattcatcaa aatatgaagt cggcagcatg gttatgaaaa      3060
     gcaactcgca ggctgcagaa cgaatcaaca taggacgaag atcgattagc tgtttcggat      3120
     ttgtcgagag ttcaactaca ctaatacgtc agcaggaaca agagtcaaca gtaaagaata      3180
     agaatcagtt attgaactat ggaaatttcg cagggcccaa attgtatcag cttggcaatg      3240
     cagaaaaggt aacgtttagg taacgcagag caagtaaagg gtagcatact gcgttacggg      3300
     ctggggaa                                                               3308
//
ID   BEL-896_AA-LTR repbase;    DNA;    INV; 550 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-896_AA-I;
KW   BEL-896_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-550
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-550
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3025-3025 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 550 BP; 170 A; 94 C; 103 G; 183 T; 0 other;
     tgttgccaat tccggcaaca ctggtgagga ggtctgctaa gatacccctc gatcggagtc        60
     tgcctgtttg gaatcatgca acatgcaaat gtcgccgagc gtatgacagt gattactagc       120
     gagatgtcag taaaataggt agtatttttc atcattaaga tattctctta aaacaaatct       180
     agttggtcat atttttgccc ttcattccac attattacgt gtttattcag aataacatca       240
     tttgaattgg attgatcagg atcgatttgt aagttagatg aatgtgaatt attataactc       300
     tgtacatcac tatatttaaa ttatgtttgg tagatctgtg aattcggagt cagctcatat       360
     tgtagcacgg tagaaagatc gtgtgtttgt tggatattca tcaagttaac gagactaaat       420
     tgtaagtttg ctataatttc tgttgatcaa acataatcga aataaatctt tttcagcttc       480
     aagaattcaa gcacaaataa ccaagtgcgt ctctctgaag aggtccgaac atccacatat       540
     atatccaaca                                                              550
//
ID   BEL-897_AA-I repbase;    DNA;    INV; 6790 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-897_;
KW   BEL-897_AA-I; BEL-897_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6790
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6790
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3021-3021 (2020).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >99% similar to each other.
XX
SQ   Sequence 6790 BP; 1863 A; 1553 C; 1599 G; 1774 T; 1 other;
     ttttggtcct tcgaaccgga ttctggaccg tcatcaaggt tggccgataa gcaccatcgt        60
     acaatgcttc ggttgaaaga agactcagac cgccatcgtt gtgctacatc acaataaggt       120
     caatgaacat aaggtcacta cacttcaact actgccatcg cgcttctgga taaagccctc       180
     aactttcgat tacggcgtcg cttgggcttg agcgccattg tgtataggct tggctgagga       240
     tagccattta ggaactggac atcatttata ttcgcatgcg acaacatcta tggggccatt       300
     gcatgatacc caccactgca cctaaggatt agctatacat atttcggaat tcaattacgg       360
     ctttcacaat caactcggag gaagaccacg cacaccgtga ggactgggga taactcgaac       420
     gctggactgg cgcaacgctt tctttctaag taagggaaac cgtcacgtcg atgaacttgg       480
     tattccgcca aattcggatt ggagctggtg ccacagcaag tgaacatctt cgagatactg       540
     gattcggttt tcggctatag tctctttgct ggaatggaag cattcaacat ccaaacgctg       600
     tgaggaagga ttgaactgcc tggttggtag aattcgtcaa cgaaggctgc atgttagacc       660
     acctaggatt accggcatga agaggtagcg ccatctacag ttttctcggg tgagtgaaca       720
     tattagtata ctgccgaagc tagacgcaga aaatacacga ttgtaaaaaa atattatcct       780
     cttcgacttt gccattttat cgctgagccc tgaatatact tttgagtgag cttttggatt       840
     cgtaaacgtt gttcggactt caccgggatt tgcacagctg ctggttcctc caggtgagtt       900
     accgcagtat atgcccggcc gaagccgaca tttatttggt tattacactc gaattctcct       960
     cttcgcatat ctctctgttt gagtcattgc tggcgcaatc gattggactg acgtcacaag      1020
     gttgttattc ggaatatcat gatgtcactg tactgaagcg tagctgtttg ttctgtcggg      1080
     taatataaaa cagtatatgc cttgcgaagc taggcctgca ctctgcctac tacaccgacc      1140
     tttttcctct tcgaatcaca tatttcctga gttgtcatcg atctgaagtt ttgaggtgtg      1200
     gcgacaaatg tatgctggca tattctacga aatcttggag catcagtact cgtttttccg      1260
     ggtaaattta tgcagtatat gcctagccga ggctaggtca actcgtagcg tactacacca      1320
     cacctctctt tctcctatgg ttcgtttcct gttggcgtga atgatgaaaa cgatgaaacc      1380
     tgacatcaag aaatcaccga cgatgagggc attgactgcg aggctgaagg aaattcaatt      1440
     atccttcagt gatatcgacc gtttcgttag attgtataaa gaaaccacca cagctaccga      1500
     aattgagatt cgactgggta agttggacga gttttgggac agcttcagtg aagctgtggt      1560
     ggatatcttc tctcacgagg agtacaaccc ggaaagtagt tctttggaga aggagcgcat      1620
     ggagttcagc gatcgatact accagttgaa gtccttcttg gcggacaaac ttaaggaact      1680
     acagcggcca caggaaatgg aaaactcaat ccgagtaggt gacggatcgg cgcatgggaa      1740
     tatggaccac gttcgtttgc cccagatcac tctacaatca ttcaatggaa atatcgacga      1800
     gtggttaagt ttccgggacc tttttacgtc actcatccat tgcaaggtgg aactaccaga      1860
     ggttgaaaag ttccattacc tgaaagggtg ccttcaaggg gaaccaaggg cactaataga      1920
     tcctctcccc atcacaaggg ctaattatca ggtggcttgg gatctgttat tgaaacggta      1980
     caacaacagt aagcaattaa aaaaacggca agtacaggcg ctcttcaaat tgccaacttt      2040
     gtgtagggaa tctggtacag aacttcacat tcttctcgaa ggcttcgaga gagttgtgca      2100
     gactctcgat caagttatca atccaaacga ctacaaggat ctattgttgg tgaacatact      2160
     tactgctcgt ttggacccag ttactcggag gggatgggaa gaggtctcat ctaccaagga      2220
     acaggataca cttgatgatt tgcgtgaata tttgcaacgt agaattcagg ttttggactg      2280
     cttacagtcg aaatcttctg acaccagagg gaccacgtca atgcaacaat tgaagtcaaa      2340
     acagcaacca atgaaaacca gctacagctc cacccaagcg cctaggactc gatgtgtcgc      2400
     ttgttcatca gaccattttc tcttctattg caaagagttc caacgattgt cagtgaccga      2460
     gagagataat cttctgaaat ccaatgggct ctgtcggaac tgtctccgga cggggcatca      2520
     ggccagggat tgtacctcca aatacagctg caaaaattgt agaggtcgcc accatacttt      2580
     agtgtgtttc aagctgcaaa aggataagga ctccaaggtg gcagcatttg tggagggcaa      2640
     tatgccatct acttcgcagg aaggccagga atcttgcagt gcatcttctg tacaagtatc      2700
     taatattgca acctcaaggt ctgtagtatc cgctacagct catcaacatt cggcacaagt      2760
     tttgttggct acagcagttg ttttaattga ggacgacagc ggctatcgtg taccagctcg      2820
     cgctctgttg gattctgggt cggaatctaa cttcatcacg gagagattga gtcagaagat      2880
     gaaggtaact cgagataggg tggacatttc tgttcttgga atcggacaaa ctggaaccaa      2940
     ggtgaaacac agaatacatg cagtggtaag atctcgtgtg tctacgtttg cacgcgagat      3000
     ggattttttg attcttccaa aggtaacggt gaaccttcca acaacttcca caaatacgga      3060
     caactgggtg tttcctagtg ggattcaatt cgcagatcct gcattcttcg agcccaacgg      3120
     tgtggatatc gtgctcggca ttgaacattt cttcgatttc ttccaaactg gtcggaggat      3180
     atccctgggt gtagggaatc caaccctcaa tgactcggta ttcggatgga tagtgagcgg      3240
     tggcattacg acttcaaacc gctcgctaca gatcagctgc aatgtgtcaa cattggaaca      3300
     attggatgca ctgatctctc ggttctggtc ttgtgaagag gttgaatcca gcaaggctct      3360
     ctcattggaa gaaaaacgtt gtgaagagaa tttcatacaa acagtttccc gaggcataga      3420
     tggacgatat accgtctcac taccaaaaca agaagatgcc atttcacggt tgggcgattc      3480
     aagggacatc gcataccggc gtctgcaagg aacagaacgg cgattggaac gggatccatt      3540
     actcagaaaa cagtacaacg gtttcatgga agaatatgtc aagcttggtc acatgcgatt      3600
     ggtggaagct tccgaaatgg attcaactaa acggtgttac ctaccacacc accctgtaat      3660
     caaggaggct agcactacta ccaaggtgcg ggtagttttt gatgcctcat gcaaaacggc      3720
     caccggtaaa tcccttaacg atgtacttct ggcagggcca gttgttcagg aggatcttcg      3780
     atctattata ctgcgaagtc gcacgaaaca gatcatgctt gtttcggacg tagagaagat      3840
     gttccggcaa atcaacattg atacgaagga ccgtccactg caatgcattc tgtggcgtta      3900
     ttcacctagc gatccacctc tctcttacga gctcaatacg gtgacatacg gaaccaaacc      3960
     agcgccgttt ttagccacca ggactctgca acaattggca ctggatgagg agaaacgktt      4020
     tccgctcgcg gcaagagcaa tcatcgatga tacttacatg gacgacgtta ttaccggagc      4080
     ggatggggtt gaaacggcca atgaaatgcg acgtcagcta gaagcaatgt cttcaagtgg      4140
     aggatttcgt ttgcgtaaat gggcatcgaa ctgtcctgct gtgttggatg gagttcatga      4200
     ggaagattta gctattcgca catcagaagg aatcattttg gatccagacc cttcaatcaa      4260
     aaccttggga ttaacttgga tgcctgtttc ggacactcta agattccagt atgcgattcc      4320
     gagtctgaac cctgacaacc cactcaccaa gagatctgta ctcgcagtga tcgctacttt      4380
     attcgacccc ttggggctct taggggcagc tataacgtca gcaaaaatct ttatgcaact      4440
     tttgtggacc ttgcaggaca gtgacaacca acgtattggc tgggatcagc cacttccttc      4500
     gacggtgggt gagatttgga gaaattttca ccagcaactt cctttgctca acgaaatccg      4560
     aattgatcga tgcgtcatca tcccgaaagc cgtatcatat gaacttcatt gtttcacaga      4620
     cgcatcagaa aaggcatatg gagcttgtct gtatgtgaaa agcgagaatg tagcaggcga      4680
     agtgaaaata cggcttctaa cctctaggtc gaaggtagca ccgttgaaat gtcaaactat      4740
     tccaaggttg gagttatgcg gcgcactact aggtgcacat ctcttcgaga aggtcgcgca      4800
     atcaatccga tttacgggaa aatcttattt ctggacggat tcaacttgtg tcctgcgttg      4860
     gatcaaggcc actccaacca cgtggaccac tttcgtcgcc aatcgagtag caaaaataca      4920
     gtccattagt cagaattctc ggtggagtca cgttccgggc gtagaaaatc cggcagatct      4980
     catctctagg ggcattccac caaaggacat cgtagataat acgatttggt ggcatggacc      5040
     tccgtggtta gaagaagaag aagagaaatg gccttgcttg ccagatggaa cgacagcatt      5100
     agaagaagat ggcgaaaaac ggcgtacaat agtcacggtt acaagctcat ccatctctga      5160
     cttcaatcaa gcatatttca acaaattctc gtcatacacc ggtcttcttc gctgtaccgc      5220
     atattggtta cgtcttatgc gactcctacg aactccaagg atggaaagaa ctaaatgttt      5280
     atttctttcg acaatggaac taaagaatgc tgaggatagt ttggtccgct tggtgcagag      5340
     ggaagttttc gcaacagaat ggaaggcgtt gtccaacaat aatgctgtcc cgagaggatc      5400
     atcacttcgg tggttcaacc catttatagc caaggatgaa ttgattcgat taggcggccg      5460
     actgaaacat tctatggaaa ctgaagaaac taaacaccct gttgtacttc cagctcgaca      5520
     tatcttcaca cgcttgttag tacgccacta ccatgaacga cttattcatg caggaccgca      5580
     attgttactt agcgtcatgc ggctccgttt ctggccgtta ggaggcagaa gcgtagcaaa      5640
     gcaaattgta caccaatgcc taaaatgctt ccgttcaaaa cctaaaacag tccagcagtt      5700
     aatgggagac ctacccgtat cgagagttac tgtgtcacgt ccgtttctca gaacaggtgt      5760
     tgattatttc ggtccattat tcgtccgacc cgcacctaga cgtccaccag tcaaggcgta      5820
     tgttgccatt tttatctgca tgtgtacgaa ggcggtgcat atggagcttg tctctgactt      5880
     gtctacggac agatttctcc aagcattgaa ccgtttcatt gccagaagag gtcgatgcac      5940
     ggatatattt tccgataatg gcactaattt tgtcggtgct cgcaacaagc ttcaagacct      6000
     gctcaaggtg cttaaggaca gcaaacatca cgagatagtc gctaacgagc tagcaagaga      6060
     aggaatccag tggcatttta atccaccaag cgctccacac tttggaggat tgtgggaagc      6120
     tgcagtacgg tcagctaagc accatattgt gaaggtgata ggagaaaacc ctgcatcacc      6180
     tgaagacctg tgtacattgt tagctcaaat tgaagcttgc ctgaacagtc gacccatcac      6240
     tcctctttcc gatgatccaa atgatctcca gcctttgacg cctgcccact tcttgattgg      6300
     agaatctcta cacgctcttc ctgaaccaga ttacagcaat attcccacca atcgactcag      6360
     tctacttcaa ctttctcagc gacgcttgca agatttttgg aaacgatgga ggagagaata      6420
     tctttgccag cttcagggtc gtgccaagcg atggaagcca gcggttccaa tagagattgg      6480
     aagtcttgtg gtaattcaag acgataattt gcctcctatg cgatggaagt tagggcggat      6540
     cgtacaagta caccctggag atgatggagt tgtaagagta gtcactctta aaaccgctac      6600
     aggattactt actcgccccg tagagcgaat ttgcatatta cctgcttcag aagaacatca      6660
     taccagcgaa gccgaaccga ttgcctcaga aacccaaagg tgatcacatc ctttcccact      6720
     cccaactccg cgaagaggat ttcttttatt tttcttgcag aaatttacga actttctggg      6780
     tgggtgagaa                                                             6790
//
ID   BEL-897_AA-LTR repbase;    DNA;    INV; 698 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.10, Created)
DT   16-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-897_AA-I;
KW   BEL-897_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-698
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-698
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3026-3026 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 698 BP; 202 A; 162 C; 160 G; 174 T; 0 other;
     tgttcgccac cgcaaacgga acaaggctac aaccctggaa ataaaattca ctttcggttt        60
     catttgtcct tgaccgacat caaccaccac aacacagcag aacgattaca gcatcaaaca       120
     atcatgaaga gctagatcgt aggtagcaga tcatcatcac catagcatcg tccgttatca       180
     gcctgcgcga taaggagagc tgagagatgt ggttgtcgga gttcgtccga agcagtccac       240
     actgagagac acactggcaa gacggcctca actgaattgc tctgcgagac gatcggcaga       300
     atcaatcata cctcggtccg ggacggagca cgtccagttt cacggtcgtc ctaattttaa       360
     agtggtagat ttaagtgtac attagattta gaataaagtt tgtccagtat gttgtgtgta       420
     cgtgtaataa aatgaagtgt agtttgttcg cggaaataca tgtagttttg aatgtgcttc       480
     tgtgtttggt gtcccaagaa cggaatttct ggcatctctc cgaaaccata aggatggcat       540
     tggcaacatc acccatggcg aatgtttgac cggctaaata gaagcaccgc accctacacc       600
     tatctcaact cacctctact ctcgatgttc ggtggattgt ccctcatcag cagctatcaa       660
     ggaggaattt ggaaaaggta aagggacaca accgttca                               698
//
ID   BEL-898_AA-I repbase;    DNA;    INV; 6409 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-898_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6409
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6409
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6409 BP; 1807 A; 1459 C; 1682 G; 1461 T; 0 other;
     aaactaaaag aaattttcca tcatgccggt gagtacgcgc agtgcttcag gaaaaaacac        60
     ccgatgcctg gcatgtagcg agtcggatac gccgcgaatg gtttcttgcg gacaatgcgt       120
     tggatggtgg cactacgagt gcgtgaatgt gaatgagtcc atcaccgaac tggatcgcac       180
     atttgtttgc cccaggtgcc agaggccgtc accgatcgtt ccatctaatt tagatcctct       240
     atcggcaaac agcaacaaaa ggctcaccag tttgtctgga aattcatcca cctccagtgt       300
     gaaggctcgg agggctcgcc tccagctgga gaaactcgag gcacagaaag ctctgatgga       360
     aaaacgtttg gagcaagcac gtcgagaaca gcagatcagg catgagcagg agaaattgat       420
     gcaggaagct gagatggaga aagtgcgttt gcagatggag gaaaccatcc ttgaggagac       480
     attccgggcc agggaagaag agttgctgga cgaggagcca gacgaaagaa gctgtacatc       540
     tgaacagagc agcatcggca aggtacgaca gtggcaaaag cagcaaggtt tttctgcacc       600
     ggtgacgacg atcacggaac caacaccagg tgcagcagtg actgaagcga aaaatgcagc       660
     ctatattggg gtagaaggga gtattatagc ggccgaaggt atgtcattta atcagtattc       720
     cgataatcta gctgtaggag gaatcattga tagggcaggc agtacattag ggcctagtgt       780
     agaggtaaat gcaaattcgc accctaacgt tttgagcacg gggatcagga atgggtcaat       840
     agctcaactt aaggaacgtt gtctccaaaa aacaacgtat aatttacctg tcaaacagca       900
     ttgtctactt ccgtcggaaa actcaaacct tcccctaaaa agtcccaatc ccttacatcc       960
     taccctcggt cataatcaat cggatactgt ccacggcacc atgagtgata acgtaaatgt      1020
     gaaaaccagt gatccagtgt accaaaccag tagagggcgc tgtaacgttc agtttccagt      1080
     gcatagtgat gtgtctcaac gatttccgat tcctgtggct ctcccggagg aaggatctct      1140
     gccaccggtt gtatcgcgat ttgctatacc atcatcgggt cggcaactgc cgcccttatc      1200
     tggaattcca catgcatctg aacctctgaa gccgcaccca tcgcgttttg aatccatagt      1260
     cccaaatagt ccacaatcat ccaattcgga atcagtcgta ccgggaatgg gtgaaccgta      1320
     tgagagtttt gtagaacagc caagacctgc accacaagca tttgtaccga atcctgttga      1380
     accaacgcac ctcgatcctc tatattccgt aaggcaggtg tttcctgcaa aaccgccaat      1440
     gatagaacaa caacctcagg caagagacgt acaagtacca gtctggggac caacagcgca      1500
     gcagctagct gcgagacaag tgatggcgaa ggaattgccg gttttttctg gaaatcccga      1560
     ggactggccg ctatttataa gctcttacaa caacaccact caggcttgcg ggcattcaca      1620
     ggcagagaat cttgcaaggt tgcagcgatg tctgaaggga cacgcacttg agtcggtacg      1680
     tagccgtctt ctacttccac aggcggttcc ccacgtcatt gctactttgg agacgctgta      1740
     cggtcgacct gaactattga tccatacgct tttgcagaaa gttcgaggag ttccagcacc      1800
     gaaacatgac aggttggata cgttgatagg atttggaatg gcagtacaga atctgtgtga      1860
     ccatttggaa gccggaggtc aagaagcaca tcttaataat ccaatgctgc tattcgagct      1920
     gatggaaaag atacccgcga acctgaagtt ggattggtca ctctataagc agcgatgtgg      1980
     ggaagtgaat cttcgggcgt tcgctcagta catgtccacc ctggtgcgtg cagcgacaga      2040
     cgtgacgtta cactatggtc cgcgaccatt gcaacatcag cagcgagacg cgcggcctga      2100
     caaaagttac agggataata acttttgtgg cgcacactct gtacaaaatc caatttctcc      2160
     aagaaaagcg ggaaaagaag aagagacgag aaaagaatca agcatgttta ttcaggcgtg      2220
     ttttgtttgc aaagatacga agcatagagt gaaggagtgc acccagtttg ctaaaaaggg      2280
     tttggatgaa cggtggaaga ctatccaaca attcggactg tgccgcaatt gcctaggggc      2340
     gcatggacga cggccgtgca aggtctttaa acgatgtgga gtcgacgggt gtcaaatgag      2400
     acatcatgag ctattacact tcaagcagga tgctaatctg gataaaaatg aagacaccgc      2460
     caccaccaac caccattcgg gaggaaagac aaatctgttc cgcattattc cggtaacgct      2520
     tttcgggaaa aatagttcca tatcagtgta tgcttttttg gatgatggat cggagcgaac      2580
     tctggtagaa gaagaagtgg cccgtgacct gggagttaca ggtgagcatc ttcccctgtg      2640
     cctacaatgg acggctaacg ttaagagaac cgaaagcgac tcacaaaggg ttgcgcttca      2700
     aatctctggt gcaagtggaa cgaaacacgt gctgtcagac gttcgcactg ttagcaggtt      2760
     ggatttgccg cgacaaacac tacattcttc gaaactggct gaagcctacc cctacttgca      2820
     agggttgcct atccaacact acgatcgagc gctaccgcgc atcttgattg gcaacgataa      2880
     cgcacatgta acagcaaccc tcaaactacg agaagggcgt ccgggtgaac ctgttgcagc      2940
     aaagacacgg ttggggtgga ccatctatgg gactaccgac aagtcggaaa atcgagctcg      3000
     cactttccac atatgcgaat gccggaatga agacacgtta gacgaggtgg tgacacagtt      3060
     cttcagcatc gaatccttgg gaataacggc agcagagtgt cctgagtctg atgaagtgaa      3120
     gcgagcgaaa gaaatcctcc aatcaactac taagcgagtt ggtcagcggt tcgaaactgg      3180
     ccttctttgg aagttcgacc atatcgagtt tccggatagt tacccgatgg cgatcaggcg      3240
     tttgcagtgc ctggaacgac gcatgaaaag cgatcctatg ataggcgaga gcgtacatcg      3300
     gcagatccaa gagtatcaaa tgaaaggcta catacataag ataacggaag aagaactcca      3360
     ggaatccgat cctcggcgcg tgtggtactt gcccctcggc gttgtcctaa atccgaagaa      3420
     gccatcaaag gttcgcatat tttgcgacgc tgcagccaaa gtggatggga tttcattaaa      3480
     ttcgatgctt ttaaaaggac cggatttact tagctcgttg cttggagttc tctgcggttt      3540
     tcgtgagaag cggattgcac tttgcgcgga cgtgaaggaa atgtttcatc aaatccaaat      3600
     acgtaaagaa gatcgtcacg cgcaaagact actttggaga gaagacccaa ctcaagctcc      3660
     tgaggtctac gtgatggatg tggctacatt cggagctaca tgctcgccat ctgccgcaca      3720
     gtttgttaag aacttgaacg ccacagagca tgcaaatgag tatccagatg cagcatatgc      3780
     tatccatcat aaacactacg tcgacgatta tttggacagt gcagacaacg ttgaagaggc      3840
     gataaagctt gcagcggaag tacgtcacgt gcattcacta ggaggtttcc atttaaggaa      3900
     ttggtatcaa attccaggga ggttctcgca cgggtcgggg ataacggaca gacaactgat      3960
     aagaatctcc aattggataa agcgagctcg acagagcgtg ttctcgggtt attttggagg      4020
     cctgaaaccg atgaattcac gttttctaca gacgttatgc aacatgtgga gcagccgact      4080
     aaacggcaag cgttaagcat agtcatgagt ccgtttgacc cgttagggtt cctatctttt      4140
     ttcctagttc atggaaaaat cctaattcaa gaactatggc gagctaagac gctgtgggat      4200
     cagacgattc cggagaccct gtgggaacga tggttgcaat ggacggaata ttttcaacga      4260
     ctggaccaga tcagcattcc acgctgctac ttcccacacc attccgtcaa cgacattata      4320
     tcgcttcagc tacatgtttt tgtagatgcg agtgaggagg cctttgcgtg tgtagcttac      4380
     tttcgggcaa agttccggga tgaaatcgag gtagcattga tagctgggaa atccaaggtg      4440
     gcaccattaa aagctctatc tataccgaga ttggagttga tggccgcggt gatcggaaca      4500
     cgcttacaga ggtccatact caacgagcac tcgttacaca tcgaccaagc cgtcttatgg      4560
     agtgattcca aaactgtact tgcctggatc aaatccgatc atcgttgcta ccgtcaattc      4620
     gtcgcatgtc gtatcggaga gatactctcg atgacccgag taagtcagtg gcgctggata      4680
     ccctctaagg agaacgtagc ggacgatgct acgaagtggg gaaaagggcc ctgcctatca      4740
     ccaaacagcc gttggttcaa agggccagat tttctatacc ttcccgagga acagtggccc      4800
     gctgatgaac ctgaaacact gccaacaagt gaggtttggt gcatcgcgaa gtggtagtgc      4860
     agacacaggt gaagtgggag catttctcgc ggtggacacg tttgtggcgg gcgatagcat      4920
     acgtacatcg ttacgtgcag aacttacgaa gcagcgtgga aaaaaccaag aagaggctcg      4980
     gaccgttgac ccaaaacgaa ttggcatcag ccgagagaac catttggcgc tgggtacaaa      5040
     gtgaagaata cccggacgaa gtagcttctg tttccgaaag aaacgagcaa caaccagggc      5100
     ggttgatgaa actggaacaa aacagcaagc ttcgaaaact gtcgccgttt atggatgaga      5160
     ccggtgtaat acgcatggaa agccgaattg ctgcggcaac tttcgcttcg ttcgacactc      5220
     gatttcctat cgtcttgccg aaaaagcatg ttgtgactgg actgctgatt ggatggtatc      5280
     atcaaaagta tcttcatgga aacggagaaa ccattgtgaa cgaggttagg caacgcttcc      5340
     atatacctag tcttcgaacg gtggttcgca aagagaagat gaagtgtgta tggtgcaaga      5400
     taaaacgctc agctccagcg attcctcgga tggctccact tccggcagcc agactaaagg      5460
     cattcgaacg tccgttttcg tacgttggag tggactattt tggacccatt gccgtgcatg      5520
     tgaatcgaac tacttccaaa agatgggtgg cattatttac ttgccttacc atcagggccg      5580
     ttcacttgga gatcgtccat tcgttgtccg cagagtcatg caaaatggcc tttcgtagat      5640
     ttgttgcacg aagaggagca cccgtagaga tttatagcga tcggggaacc aattttgtgg      5700
     gatccagtaa ggaattgaaa caggagatga acactattga tcaacagctt gcagagacct      5760
     tcactaacgc acacaccaag tgggtattta atccgcccac cgctcctcac tttggtggag      5820
     cttgggagcg gttggtgcga tcggtgaaga cagcgctagc ggcgatgtac acatcaaggg      5880
     ttccgaaaga ggagacgctg gcaactttgg tggcagaagc tgagagcata gtaaattcaa      5940
     ggccacttac tttcatccca ctcgaagagg agcaacaaga ggcactaact cctaaccatt      6000
     tcctgctact aagttccaac ggagtagtac agactacaag gacactagcg gatactaggg      6060
     aagcctgtcg aaatcaatgg aacctttgta gagtaatggt tgacgcattc tggaggagat      6120
     gggtgcgaga ataccttccg aatctgacgc gtcgcaccaa gtggtttgat gatgtgccct      6180
     ctattcaacc aggagattta gtgatcattg tggaagataa tgtacgtaac ggatggaccc      6240
     gaggtcgggt cacagaagtg gtcaaggcta gagatggccg tatacgtcaa gccgtgttga      6300
     agacagctgc aggattcatt cgacgaccga ttgctaaatt ggcgcggcta gacatactgg      6360
     aaagtaagac tgatccggaa gtttcggaac agtttacggg tcggggaga                  6409
//
ID   BEL-898_AA-LTR repbase;    DNA;    INV; 620 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-898_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-620
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-620
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3027-3027 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 620 BP; 211 A; 107 C; 124 G; 178 T; 0 other;
     tgttacggtg gatagcgccg tgcctttgga tacccctcgg acgtaagaga acgcgttgcg        60
     tcaaagagcg tcagctgtca ttgcctctat gtggttgatt caatccactg tacctagata       120
     gagagcagaa aacggattga aaggaggact ttctagtggt taacaacagt tgtcgatacc       180
     atattattat ttaatagatt attccgtgaa ctaaatttac cagtaattgt tatatttcat       240
     ttgtgagtat aatttctaaa atttgcttaa ttggaactga attcgaaaca aattatagct       300
     atccaatacg cactgaacca gaagaggctt cgcatgattc agcagagtta gagcaggata       360
     tatacagtga gttattcagg aattgaaaca atgaattaag gataacccta aattgatgtt       420
     ttagctaagt gaatcaagga cacgaattgc ataggtttca ttgttggcaa aaattggagt       480
     gcggaacaaa atttgtaagt ttcttataat tcaaatcaac agaacgacaa ataataaaat       540
     aaaaacagct tttagcgcat tgaatcacca caaccaacgg tgttgctgct caaaagactc       600
     cggacattct tacgccaaca                                                   620
//
ID   BEL-899_AA-I repbase;    DNA;    INV; 6034 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-899_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6034
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6034
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6034 BP; 2210 A; 1103 C; 1190 G; 1531 T; 0 other;
     attggtgacc tccagagagg atcagtgctg aaagaactca cgtgcagaac ggatttcgga        60
     aaaaaatgtc taaagccaag tatgtcatca acaccatggg taattgccgc ctttgcaagg       120
     aacctgatgc taaggatgat atgatagcat gcgacgagtg catgtcatgg ttccattttt       180
     gctgtgtcgg gatcacggag aaacccggca aggatgacaa atggtcttgt gtcaaatgca       240
     gtgaacatga tgcattagca caaaaggtag aggaactaag tcaggctctt tccaaatcag       300
     ccattggaaa tcctgtattt gaaacaaaac catcaacatc tatgggaaat acatcgaaaa       360
     cgtttacaac gacgtcgatt ccagttacta cagctattca tgatagcatg atgatacatc       420
     tgaagcgtca agcattgcta caattaccaa cgttttctgg tgctgccaaa gattggccga       480
     aatttaaaca aatttatgac caaacaacaa gagaaggtat gtttagcaat ctggaaaact       540
     taaccagatt acattcagtg cttcaaggag ctgcagcaag gagtgtgcag cagctaatga       600
     tggatccagc gaatattcca agaattatcg caagattgga agaaaacttt ggaaaaccag       660
     aaataatcta cagagagttg gttttctata taatgaagat aaagaaagat gccaacaact       720
     cagtgataga gatatcagaa acactagaaa atctagtgaa caacatgagg gctttaaata       780
     agccaaatta tctgcaagat catcgtttaa tcgatgacat cgttgaaaaa ttaccacatg       840
     gcctgcaatt gcaatgggca gatgtgctca taggaaatgc gaatgcagcg caaccttcat       900
     tggttgatct gagtgactgg ctgattatca aaagtaaatg ctatcgtgta ttaaagtcag       960
     tcacgcataa ttacgatcga aaattaccaa tcaacttcca tgaaacatct catggaaaat      1020
     gtattctatg taagaatcca cataagctat atcagtgcaa caactacaaa caattgaaag      1080
     ttgaggacaa aattcagctt gttcgatcga atgatttatg tttcaactgt ttactttcgg      1140
     gtcatcgttc aatgcaatgc agaaatactc gaaggtgcaa cgtgaatggt tgcactagga      1200
     agcatcatgc atccttgcat gaatcaaagc caatgaaaca atcaaatacg ctaggtaaca      1260
     gtgaaaaaag aacaaaacag caacccatta cacaagcacc aaagaaaatt gagcaaaaat      1320
     caacggacat tgttgaaaat ataaatcatc accagcaatt caaacgtaaa atcctgtacc      1380
     aaattattcc ggtagagcta agcagtggtt ctaggagcat gaagaccttt gccttcctag      1440
     atcaaggttc atcctctact ctaattgatc aagaagtagc aaactatctg gaattgcagg      1500
     gtagaacaga aataattacc ctaaattgga ctcaaaatat aagcaaagat gttgaaagca      1560
     aatatgtgac attgaaaatc aaaggaatca caaatcatca gtttacatta aaaggagttc      1620
     aaacgatcga gaacctgcaa ttaccaacac aatctgtgaa cccactcatt attaaggaac      1680
     aatgtttaca atttaaagac atcaatattg aaggacacga gaatgccaaa ccaactattt      1740
     taattggcgc agataatgct catcttttgt tacctcttga atggaaaggt tatggaccat      1800
     atgccataaa aacaaaatta gggtggactt tgctcggaaa agtgacggca tcagcaaatg      1860
     aaaaaatcta ttcaatggtt atcgattcgt ataaaattga gaaaatgcta aatgactatt      1920
     tttccattga ggaccatgga gtgcaatcgg aggccctaaa taatcttccc aaatcaaggg      1980
     ctgagaaacg tgcagctgat ataattgaaa acacattaaa gtacaaagat ggccgatacg      2040
     aaattggatt actttggaag caagacacaa tctgctttcc ggatagtttt cattacgcat      2100
     tgaaaagact atatacgatg gaaaaaggac tgctcactaa tccagaactt aaaacttggg      2160
     caatcaatac tttcaaggat tacgagagaa aaggatatat tcgcaaatta actcaagctg      2220
     agctagcaga accaaataga ccaacatttt acctgcacat ttcatcgtaa tcaacagaaa      2280
     taagccaaag ccaaagcctc gattagtatt tgacgcagca gcagttgtaa aaggaacttc      2340
     ttttaattcc actttgttga gtggaccaga tgcgacaact ccattgtttg gagtgttatt      2400
     gcgcttccgc gaaggacaat acgctgtaag tggtgacatc gcagaaatgt tccaccagat      2460
     caaaattata gaaaaagatc aacacgccca acgattcttg tggcgcgatt gtaatccaga      2520
     aaaggaaccc gaagtatttg tcatgcaagt tatgacattt ggatccacat gttcaccttc      2580
     atgtgcccaa gccgtaaaga actttaacgc aagcaagttc acggaaaagt atccaaaggc      2640
     agctatagca gtcgttaaac aacattatgt tgacgattac ttggatagct ttgatacgga      2700
     agaagaagct tctcaaataa caaatcaagt gatcgacatt cacgatacgg ccggattctt      2760
     cattcgaaac ttcatttcga acagcagatc aattacggaa accttaccga aggatcgtca      2820
     agagcagaag tctatgaaat tattcagcca gaaggaatct gagtttgaaa aggttttggg      2880
     agtctattgg aatacgaata atgacgcaat tggctataca ataaacatga acaaactatc      2940
     catcgaagta cttcggcagg aaaatctacc gaggaaaaga gaagtgctag ccttcgtagc      3000
     atctatttat gatccgttag gattaattgc caacatcaca attcatggaa aaatattagt      3060
     tcaaatgatg cacaaggaaa ctatagattg ggatcaacga atgtctgagc atatggaaca      3120
     atattggaca cattggttag atttgattaa acaagctgaa aacttgtcca taccaagaca      3180
     cgtttcaaca ccaggtgcaa gtgatattga gcttcataca tttgttgatg catcagaacg      3240
     tgcttatgcc gcctgtatat atgtaaggag caagaataaa gatcaagcaa tatcaaaatt      3300
     actttgcgct aaatcaaaag ttgcgcctac gagaacaaaa tcaattccaa gattggagtt      3360
     ggaaggagca cttcttggag caagactatt aaagcaagtc agggaagacc taagattggt      3420
     accatcaaag gtagtattat ggactgattc tcaaaatgtc ctttcttgca tcgccagtga      3480
     tcagtggaag tacaaacaaa tagttgcagt aagagttgga gaaatactca ccacaacatc      3540
     agtagaccaa tggagatggg tgccatcaaa atcaaatcct gctgacgagg caacaaaaga      3600
     agtaacaaga aaaacaatat ggttcgatgg gccagatttt cttagattac ctgaagagca      3660
     ttggccagca accaagaaga ttactgagac aacagaggaa ctaaaacatg tcggagtgca      3720
     tgcggagacc attcagcagc catttgaaga gagatattcc agttggaaaa gattaattca      3780
     tcatatgtgc attctaaaga aatttgtgga atggctacgg aatgacaaca tcaaacgtga      3840
     aatcaccatg gaagatcgta cctacgtaga aagaatcata tttaaaaggg tacagtctga      3900
     cgcctttgca gaagaattta aggatataca taacaacaag ccattatcaa agaaaagtaa      3960
     gctttgtctg gtaaacccaa tcattgatca atatggatta ctacgagtta atgggcgatt      4020
     agcaaattca acaattccag aggtaccaaa ttttcaaatt atattaccca aaaaacatca      4080
     tgtgacaaat ttaatactga caatgtatca tcaaagatat tggcatcaag gcgataacat      4140
     agttatatac aacttttcac tgaattatta tgtaccagct ataagaaatg cgttaaatta      4200
     tgtcaaatct aaatgtccga gatgtatttt gttgaaggca aaaccggtat atcctcaaat      4260
     ggcctgtgtt cctgattcaa gattggaaat ttatgcacca ccattcacta atacgggtgt      4320
     agattatttt ggacctctcg aagtaaaggt gcatcgttca actgagaaac gatggggagt      4380
     tatatttaca tgtatgacaa ctcgagcagt acatctggaa ttagcagaaa aactagacac      4440
     agattcattt tttatgtgtt tccggaattt ccaaaaccga cgcgggaaaa ttgctcacat      4500
     gtttagcgac aacggaacga attttgttgg agcagaaaac aagttgaagg aattaattct      4560
     ggaaataaat gatcgaatgg gaaaaggagt tgcagcatcc ttggaaatta attggacgtt      4620
     taacccgcct ggtgcaccac attttggagg agtatgggag cggttaattc agattataaa      4680
     gaattgccta tatgaaatgt tgaaagctta tcagaatagc catccatcac cggacgtatt      4740
     gagatctgca ctcatacaag ctgagttctt tttgaactca aggccattaa catatattcc      4800
     agtggagaat attgcagagg aagtattaac accctttcac ttcttaatcg gaagggcagg      4860
     agaatatgta cctccatttt caccaaatct acaaccattc ggaccaggac agttgcgaaa      4920
     ggctcaacat tatgcaaagc atttctggga tcagtggaaa aagttatact tgccgactat      4980
     tatcaagagg tgtaaatgga ctgataaaat cattccgtta aaagttggag acatagtcgt      5040
     atacatagaa gatgatcaaa aagtacctcc aggtacatgg aaaaaaggat taattgttaa      5100
     agtttaccca gataaagatg gacaagtacg taaagcagat gtcaagatag gcaataaaat      5160
     aatgcaaaga cgtcctgcat tcaaattagc tcttctaaat gttcaagaag aaaaagaaaa      5220
     taattcggaa atgcaaaaca tcccagaaac gagccaaaca aaacctcaaa attcaatact      5280
     ttgtgttact cagacttaca aacgaaaatc ggttgatatg agttttccaa actggggcaa      5340
     gaaggaaaaa atcgatgaag gagagatcaa aaagagacgt aatcaactgc accggaaaaa      5400
     ttatcgacag aaatcgtgac aacatggaca tacatatcgc taccaaatct tatgaaatca      5460
     ggagtttatg acgaagaaag tgtcaagaaa atgaaaaaca tgatttatga acaaggtgac      5520
     agacgcattg catcgtcagt tctacacaga attttaacaa atcaaaaccc aaaccatcaa      5580
     ggatttcgat ttgacgcctt ggtaacagaa aacgtggtag gagttattaa caaatactgg      5640
     gaaaagattt tatcatggtc tcactggttt ggaaatttat catcaacggg gttaggagcg      5700
     tatctcacat tccgtgcctt gaaattttaa tcgacacggt aatccatgga caaattctgt      5760
     atgacatata tggattcgga tggcagctga ttgcatcact gtgggattca ttcaccaact      5820
     tcctatcgca tcgtcacgca actagaagac cattcccgca gaattcccac gaagaaccat      5880
     cagtattacc tatagcaagt gcaccattaa atgtaggatc agatgaaaat aatacagaag      5940
     cccaaatacc ctttaaagga atataccctt taataaaaac ttctaacaat tcataataat      6000
     gtaaatttac gaggtacatt tacaggggca agaa                                  6034
//
ID   BEL-899_AA-LTR repbase;    DNA;    INV; 612 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-899_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-612
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-612
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3028-3028 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 612 BP; 221 A; 115 C; 121 G; 155 T; 0 other;
     tgttaaaaat taaatctaat ttcaacgcat gattaattag aatttttaag tctctagacg        60
     actcgcgtct agacagtgta gccgatagaa ttccaaaatt ccgaacttgc taattgctct       120
     gcctttcaca ttttattacc tcttctaaag ggacggtaca ccgtctcgac aaaacataaa       180
     catccgattc tcgcagtaga caataataag gaaagcccag catcaatcag ggaacgcacg       240
     cgcgtttaca ggcaggcaca tagaagcaaa agaataatgt aaatcaggta aatgagatct       300
     tcaattggtc gcgttcggaa acgtaaggcg acacgtaacg acaaactgcg tttaggaaaa       360
     tgccagcttg aaggtagcga aagtagtagg taagcatagg ttaagaaatt caatgtatat       420
     ataagacaaa atgttagaaa tacaatcagt gttgttagca agctcatctt gtgaagatat       480
     ttatccgaaa gttactctga agtagattct ctaagatcct tcaccaggca taggttcaaa       540
     gtgacgaata ctagcccgaa gttatcaagg attatctgcg gataagtaac aaaagtccga       600
     acagaaacaa ca                                                           612
//
ID   BEL-89_AA-I repbase;    DNA;    INV; 5581 BP.
XX
AC   supercont1.336;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-89_AA_;
KW   BEL-89_AA-LTR; BEL-89_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5581
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.336; Positions 1050016 1055596.
XX
CC   Positions [4590-5174] - Integrase core
CC   'TACAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..5579
FT                 /product="BEL-89_AA-I_1p"
FT                 /translation="MSENEFRGFDENEMASEGTGKVASQIPAVTDPAIAAQ
FT                 LKSLNRQRNLAMNKVLRIYENVNVRLPIDSANLKVYASKLQSAYDEYSKYH
FT                 SEIIAIVPDDAVSAQEDEYIRFEDYYQHTSVAVESRLMRQPANQVAPPAQV
FT                 IVHQQPLKAPIPTFDGEYTKWPKFKAMFQDVMAQSRDSDAIKLYHLDKALV
FT                 GAAAGVLDAKTINEGNYTQAWTLLSERYENKRVIVETHIRGLLSLKKMATE
FT                 SHKELRSLLDECINHVESLEYLKQEVTGVSELMIVYLLTAALDKSTRKQWE
FT                 QTLKPGELPQYKSTMAFLKSQCQVLERCESAYPQITTKPVPKQQSSIPKVT
FT                 SQRSHAAMTSSENFIEKCDFCAAPHRNYQCNKLNSLTSAEKFEKVRSAGIC
FT                 FNCLRKGHRSNACPSSKSCQKCNKRHHTQLHDDESKPKPESTTSNVATEPK
FT                 PEGQGQSSTAPVPLAIPSSEANVTTTCHVNNAHAPKTVLLLTAVILVTDSN
FT                 NQIHQCRALLDSGSQANFITESMANTLGMEKKRANVPISGINNVRSLARDK
FT                 VEVQFQSRCSDFRASLECLVTPKVTGTIPTTDIDVTSWVLPDGIQLADPLF
FT                 FKTDKVDMLIGAELFFALMTPGLIRLDDDLPELRNSHLGWLVTGAYRPVSN
FT                 DEAIQYSHVASLDSVEGMIRRFWETEEVPNAATISSEEQQCEDHFSSTYSR
FT                 DNTGRFVVRLPLKENADQIDSCRNLALRRFFMLENRLQRNPELKDQYVEFI
FT                 REYLHLGHCREVDIANDTPNLKPYYLPHHAVLRPGSSSTKCRVVFDASAKS
FT                 APTNLSLNEALLVGPAVQSDILSIMIRFRHNRYVFTADIKKMYRQIVVHPD
FT                 DTHKQRIFWREHPNEALKILELMTVTYGTASAPFQATRSLIQLANDEAENF
FT                 PVAAAIIKFDCYVDDVLSGTATIDEAIEAQRQLKEMLARGGFPIHKWCSNA
FT                 PQLLALIPEDERESLKPLADRHVNEVIKVLGLLWEPTSDELLIAECSKPEN
FT                 ERDQPATKRIIYSEVAKHFDPLGLFSPSILVAKLLVQRLWQCKLDWDEPVD
FT                 ARTQLEWNELKDALPKLLLIKIPRQVTFHGAIYYELHGFADASNVAYGACV
FT                 YIQSTLEDGSVKSRLLISKSKVAPNHPLTIPRKELCAALLLVRLVCKVLPA
FT                 LTIPIRRVNLYSDSEIVLSWLKKHPYQLQTFVCNRINEIQVNSEGFSWNYV
FT                 RSQHNPADIVSRGLLPSELMVSELFWTGGEYINSPVVSTGAANEIPDGELP
FT                 ELKANLVSMPALIEEPLEIFETCSSFRRLQRTIAWVLRFCNNTRKPKEDRI
FT                 TSSHLNVQELRSSMIVIVRVIQHVELGDEILRLKTKTPCKRIGNLNPILTD
FT                 DGVLRVGGRLKHSNLPIESKHQLILPNASPVTRCLIRDMHQELLHVGPAGL
FT                 LSAIRRRFWLLRARSTIRQVTGSCVKCFRANPTDITQLMGDLPKQRVTPSP
FT                 AFNITGVDYAGPILVKQGTHRAKVVKAYIAVFVCMATKAIHLELVSDLTTD
FT                 AFLAALQRFVSRRGIVSEMHSDNATNFHGTNNELHKLYEMFRNQPDVDRIL
FT                 HFCHVKEIEWHFIPPDSPEFGGLWEAAVKCTKTHLKRVIGDKTLNFEEMST
FT                 ILCEIEAVLNSRPLFAISGDPADPEVITPAHFLIGRPMTAIPEPSYQDLNI
FT                 GRLDRWQHLQLLREQFWRAWSRDYLSSLQPRKKNWNTSANVRPGMIVLLKD
FT                 KNRPPLQWKLGRITSVHPGHDGLVRVVEVFSEGKTFTRSISKLSILPIEEN
FT                 QGQPDQREKVEPRRFNPGD"
XX
SQ   Sequence 5581 BP; 1568 A; 1507 C; 1323 G; 1183 T; 0 other;
     aatggtccga atcgaaccgg attggacttc ccgagtgcgt gccgccccga aaccgattcc        60
     cgaaacgtga tcctgctgag gcagaacagt gcaaaaagtg aattcctgct gcggcagaaa       120
     agtgcgaaat tcctgctgag gcagaacagt gctaaaaaga agattcctgc tgaggcagaa       180
     cagtgagaaa aaaaaaggac gaaaacaaaa tgtcggagaa cgaattccgt ggtttcgacg       240
     aaaacgaaat ggcttccgaa ggaactggca aagttgccag ccaaataccc gccgtaacag       300
     atcccgcaat agcagctcag ctcaaatcgc taaatcgcca gcgcaatctg gcaatgaaca       360
     aggttcttcg catctacgaa aacgtcaacg tccggcttcc gatcgattca gctaacttga       420
     aagtgtacgc atcgaaacta caatctgcgt atgacgaata ctcgaaatac cacagcgaaa       480
     ttatcgccat agtcccggac gatgcggtga gtgcgcagga ggacgagtac attcgattcg       540
     aggattatta tcaacacact tccgtcgcag tcgaatctcg cctcatgcgg caacctgcca       600
     atcaggtggc ccctccagcg caggtcatcg ttcaccagca gccattgaaa gctccgatcc       660
     ccacttttga cggtgagtac accaagtggc caaaattcaa agccatgttt caagacgtaa       720
     tggcacaatc ccgcgactcg gatgcgataa agctctacca cctcgacaag gcgctggtgg       780
     gagcagcggc aggagtattg gatgcgaaga ccataaacga gggcaattac acgcaagcat       840
     ggacacttct atccgaacgc tacgagaaca aacgagtgat tgttgagact cacatccgtg       900
     gtctactttc actcaagaaa atggcaaccg aatcccacaa agagctgcga tcccttctag       960
     atgagtgcat caaccacgtc gaaagtctcg agtacctaaa gcaggaagta actggtgtgt      1020
     ccgaactgat gatcgtctac ctactaactg cagctctgga taaatcgacc cgaaagcaat      1080
     gggagcagac tctgaagcca ggcgagttgc cacaatacaa atccacgatg gccttcttga      1140
     agtcgcagtg tcaagtactg gagaggtgcg aatctgcata cccgcagata acaacgaaac      1200
     ccgttccgaa acagcagagt tcgataccga aggtcaccag tcagcggtca catgcagcaa      1260
     tgacaagctc cgagaatttc atcgagaagt gcgatttctg cgcagccccg catcgaaatt      1320
     atcagtgcaa caagttgaat tcgctcacca gcgctgaaaa gttcgagaag gttcgatcgg      1380
     caggcatttg tttcaattgc ctccgaaagg gtcatcgttc caatgcttgc ccatcttcga      1440
     aatcctgcca gaagtgtaac aagcgacacc acacacaact gcacgatgat gaatcaaaac      1500
     cgaaaccgga atccacgacc agcaacgtag caactgaacc gaaaccagaa ggtcaaggac      1560
     aatcgtctac agcgccagtc cctctggcaa tcccatcgtc agaagcaaac gtcacgacaa      1620
     cttgccacgt gaacaacgcc cacgctccga agacagtgct actgctaaca gcggtgatcc      1680
     ttgtcaccga cagtaacaac caaatccacc agtgtcgagc cctactcgat agtggatcgc      1740
     aagcgaactt catcaccgaa agcatggcca acacccttgg catggagaag aagcgagcca      1800
     acgtaccgat ttccggcatc aacaacgtca gaagtctagc acgagacaag gtggaagtgc      1860
     aattccaatc tcgatgcagc gactttcgtg cctcgctgga gtgcctggtg actcccaaag      1920
     tcactggaac catcccgaca accgacatcg atgttaccag ctgggtgcta ccagacggta      1980
     ttcagttggc cgatcctttg ttcttcaaaa cggacaaggt tgatatgctg atcggcgcag      2040
     agttattttt tgcgctaatg actccaggac tcatcagact cgacgacgat ttgccagaac      2100
     tccgcaactc acacctggga tggctggtca ctggtgccta ccggccagta agcaacgatg      2160
     aagcgatcca gtattcccat gtagcatctc tcgattctgt cgaaggaatg attcgacggt      2220
     tctgggagac cgaagaagtt ccaaacgcag ccaccatatc atccgaggag cagcaatgtg      2280
     aagaccattt ttcgtccacc tactcacgag acaacacagg acgattcgtg gttcgattac      2340
     cgcttaaaga gaacgccgac cagatagaca gctgccgaaa cctagcattg cgccgttttt      2400
     tcatgctaga aaatcggctc cagcgaaatc ccgaactgaa agaccagtat gtggaattca      2460
     tacgagagta tctgcatctt ggtcattgcc gagaagtgga tatagccaac gacactccga      2520
     acttgaagcc atactacttg ccacaccacg cagtactacg cccaggcagc tcgtcaacca      2580
     agtgtcgagt tgtcttcgac gcaagcgcca aatctgctcc gacgaatctg tccctcaacg      2640
     aagccctgct ggtgggacca gcagtccaaa gcgacatcct ctcgatcatg attcgattcc      2700
     gtcataatag atacgtcttc acggcggaca taaagaaaat gtatcgccaa atcgttgttc      2760
     atcccgacga cacgcataag cagcgcattt tttggaggga gcatccgaat gaagccttga      2820
     aaatactcga actgatgacc gttacgtacg gtacagcttc cgcacccttt caagcaactc      2880
     gaagcctgat acaactcgcc aacgacgaag ctgaaaattt tcctgtagca gcggcaataa      2940
     tcaaattcga ctgttacgtt gacgacgttt tgtcagggac tgctacgatc gacgaagcca      3000
     tcgaagcaca gcgccaactg aaggagatgt tagcacgtgg tgggttccca atccacaaat      3060
     ggtgctccaa cgcccctcaa ctgctagcac tcatcccaga ggacgaacga gaatcgttga      3120
     agccgcttgc agatcgtcat gtcaacgaag tgatcaaagt tctcggcctg ctgtgggagc      3180
     cgacctccga cgagcttttg attgctgaat gttccaagcc agaaaatgaa cgagaccaac      3240
     ccgccacgaa gagaatcatt tattcagagg ttgccaaaca cttcgaccca ctaggactat      3300
     tttcaccctc cattctggtt gcaaagctgc ttgtacaacg cttgtggcaa tgcaaactgg      3360
     attgggacga acctgtggac gcaagaactc aactcgaatg gaacgaactc aaggatgcgc      3420
     tccccaaact gctgctaatc aaaattcccc gccaagtgac gttccatggc gcaatctact      3480
     acgagctaca tggatttgcg gacgcttcca atgtggcata cggagcgtgc gtgtacatcc      3540
     aaagcacact ggaagacgga tcggtcaagt ctcgattact aatcagcaag tccaaagtgg      3600
     caccgaatca cccactcaca ataccacgca aggaattatg tgctgcactt ttgctcgtta      3660
     ggctggtgtg caaagtgcta cccgccctca ccattccgat tcgaagagtt aatttgtatt      3720
     ccgacagcga gatcgtctta tcgtggctaa agaagcatcc ttatcagcta cagacgttcg      3780
     tatgcaaccg catcaacgag attcaggtca actcggaagg gttttcatgg aactacgttc      3840
     gctcacaaca caacccagca gacatcgttt ctcgtgggct acttcctagc gagctcatgg      3900
     taagcgagct gttttggaca ggcggtgagt atatcaattc acctgtcgtc agtaccggag      3960
     cggcaaacga aattcctgac ggcgaacttc cggaattgaa agccaacctg gtatcaatgc      4020
     cggcgctcat cgaagagccg ctggaaatct tcgagacctg cagttctttt cgtcgactcc      4080
     aacgaacgat cgcatgggtt ttgcggttct gtaacaacac ccgcaaaccg aaggaggatc      4140
     gcatcaccag tagtcatctc aacgttcaag aacttcgaag ctcgatgatc gttattgtaa      4200
     gagtaattca gcacgtcgag cttggagacg aaatccttcg attgaaaacg aaaacgcctt      4260
     gcaaacgaat tggaaatctt aatccgattc tcaccgacga cggcgtgcta agggtcggcg      4320
     gacgactcaa gcactccaac ttgccaatcg aatcgaagca ccaactgatt ctcccgaatg      4380
     caagcccggt aacacgctgc ttgatccgtg atatgcacca agagcttctt cacgttggac      4440
     ctgctggact tctttccgca atcagacgtc gtttttggtt gctacgcgcc cgatcaacaa      4500
     ttcgacaggt aactggatcg tgtgtgaaat gctttcgcgc aaatccaacc gacattacgc      4560
     agctcatggg ggacctacca aagcaacgtg taacaccgtc tcccgccttc aacatcaccg      4620
     gcgtggacta tgccggtccg attttggtca agcagggtac tcatcgagcc aaggtggtca      4680
     aagcttatat agctgtgttc gtttgcatgg ccacgaaagc catacacttg gaactggtgt      4740
     ccgacctgac gaccgacgct ttccttgctg cgctccaacg ctttgtgagc cgtaggggaa      4800
     tagtatcgga gatgcattcc gataatgcaa caaattttca tggcacgaac aacgagctcc      4860
     ataagctgta cgagatgttc cgaaaccagc ccgatgtcga tcgaatcctg catttttgcc      4920
     acgtgaagga aatcgagtgg cacttcattc cgccagattc gcccgagttc ggcggcttgt      4980
     gggaggctgc agtgaagtgc acgaagacac acctgaaacg agtgataggc gataagacgt      5040
     taaatttcga agaaatgtct acgatactct gcgaaattga agcagttctc aactcgaggc      5100
     cgctttttgc aatatcggga gatccagctg atcccgaagt aattactcca gctcatttcc      5160
     tgataggacg ccctatgact gcgatacccg agccatcata ccaggacctc aatatcggcc      5220
     ggcttgaccg ctggcagcat cttcaactgc ttcgagagca gttttggagg gcctggtccc      5280
     gtgattacct gagcagccta caacccagga agaagaattg gaacacctcc gccaacgttc      5340
     gaccaggaat gatcgtcctg cttaaggaca agaatcgacc acctctacag tggaagctcg      5400
     gccgcatcac atctgtccat cccggtcacg atggtctggt cagagttgtg gaagttttca      5460
     gcgaaggtaa gacttttacg cgatcgattt cgaaactgtc aatcttgcca atcgaggaaa      5520
     accaaggcca acctgatcaa cgggagaaag ttgaaccgcg acgcttcaac ccgggggatg      5580
     a                                                                      5581
//
ID   BEL-89_AA-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   supercont1.336;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-89_AA_;
KW   BEL-89_AA-I; BEL-89_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-364
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.336; Positions 1049652 1050015.
XX
SQ   Sequence 364 BP; 119 A; 92 C; 84 G; 69 T; 0 other;
     tgttccaaac gaaaagcgtt cagtgtagca gcgccgactc gcatcgccca atgctgaacg        60
     caacgatgtg cgtttggaaa ggaaggagat aaacgcgcga aaacgacgac agaacggaag       120
     aaggaaagcg agggaaaagc gaatgcgaac gccattatta gttcacccgt ctaccgaaca       180
     ggcaacaccg cgacgcgttc gaacaagttt ttcaataaag ttaagtttaa tgtgattaat       240
     tccgactccg atttatttcc gaccgcgatc cgaaaggaaa cccgaaattc cgcccgatta       300
     gaaccgtact ctggaagtcc cgaaaataca gtccaccgaa acacgatttt ttcccgaccg       360
     aaca                                                                    364
//
ID   BEL-89_CQ-I repbase;    DNA;    INV; 6838 BP.
XX
AC   AAWU01006427;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-89_CQ_;
KW   BEL-89_CQ-LTR; BEL-89_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6838
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 311-311 (2011).
XX
DR   GenBank; AAWU01006427; Positions   89953   96790.
XX
CC   Positions [5816-6388] - Integrase core
CC   'GAATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1475..6745
FT                 /product="BEL-89_CQ-I_1p"
FT                 /translation="MPRLPKSTVATATTSLKVLLAKLKSHQASFNIICQFK
FT                 DDYPEDATANQINVRLERLDELWELMSEVTSDIMAHDDFEGTTATFDKERS
FT                 SWENLYYEVKSFLLDKLKDFTQPNLNQSTLPADQSTSSGSMDHVRLPPITL
FT                 QKFDGNIDEWLSFRDLYTSLIHWKTDLPDVEKFHYLRSSLIGEALSHIANI
FT                 KISKANYALAWETLTKEYNNHKLLKKKQAQSFFELPVLVKESAKDLHKLVE
FT                 SFNMIVQSLDQVVQPNDYKDLLLVELLSSRLDPATRRGWEEFTSTKETDSL
FT                 KNLTDFLTRRVRILEALPVKTSEYKQDSNAAAKKKPFQVRVSHNAVQKQIS
FT                 KCPACPESHGLYICPTFQKMSVASRESFIRNNNLCRNCLRSGHQAKKCTSR
FT                 FSCRNCKARHHTMVCFQPEGGGNARSNSTEMVPTTSNNNQRQSTPGETAST
FT                 AAGEQVSSHVANRRTSKILLATAVVLIENEHGLRVSARALLDSGSECNFIS
FT                 EKLCQQLRIQREKVDVSITGIGNATTKAKHRVQATIKSRFSIFSRDLHFIV
FT                 LPKVTVDLPMTQVDITEWEIPDGIDLADPSFFKPGSVDLVIGIQAFFSFFK
FT                 TGKELSLGNGLPTLTESVFGWIISGEVVESSQPTTITCNMALTDRLDELLE
FT                 RFWACEEVGDSNNYSVDETRCEEQYQRTVKRAPDGRYTVTLPKHEGGLEQL
FT                 GDSEEIATKRLYGLERRLEKDLELRKQYNDFMTEYITLGHMEKVDDDSRAN
FT                 VKRCFLPHHPVLRESSTTTKCRVVFDASCKTSTGVSLNDTLLVGPIVQQDL
FT                 RTIMLRARVRQVMLVADVEKMFRQTDMDPEDRPLQSIKWRFGPDEEVASYE
FT                 LSTVTYGTKPAPFLATRTLKQLATDERERFPLAAESVDDDIYMDDVICGAA
FT                 DLDTAINLRQQYDGMMASGGLRLRKWASNWEDALKGVPNENLAFADEVSWD
FT                 QDASVKTLGLTWLPRTDQFRFNFQIPEIKSNQPLTKRIVTSIVARLFDPLG
FT                 LIGACVVGAKIYLQELWDLIDKETGKPIDWDTELPATVGEKIRRFLLKIPH
FT                 LNELRIPRCVLARGATKFELHCFTDASEKAYGACIYLRSMDDEGNISVHLL
FT                 TSKSKVAPRKLQTLPRLELCGAYLGALLVEKVLQALKVSVNVYYWTDSTCV
FT                 LMWLRAVPSTWVTYVANRVAKIQALTAGHTWHHVPGTINPADLISRGIPPD
FT                 MIGSNVIWWEGPIFLKLEKDQWPSQPTVSPDEAPERRKTACTATQEQTPFS
FT                 VDFVSRYSSYMKLVRSTAYWLRLKAMLRHQTSPKQHKFLSATEFKRAELAI
FT                 IGMVQREVFADELKALSEGKSVARNSPLRWFTPAVDKNGILRVGGRLSHSQ
FT                 ETHDTKHPMVLPAKHPLTQLIFEDYHEQLLHAGPQQLLAAVRQRFWPLGGR
FT                 NTARSVYHRCQRCFRAKPIVLQQQMGQLPSARVTACKPFLKVGLDFFGPVF
FT                 TKAGRGRTAIKSYVAVFVCMCTKAVHMEHVSDLSTERFLQALRRFIARRGR
FT                 PSDIYSDNGTNFVGARNQLLELFNILESDREVICREATKEGINWHFNPPSA
FT                 PHFGGLWEAAVRSAKYHLLRVLGNSTVSAEDFNTLLVQVEGVLNSRPLTPL
FT                 SDDPTDLEPLTPAHFLTGGPIHALPEPDYSNEKLNRLSRWQLVQRQLQDFW
FT                 TRWRKEYLTQLQAKPKNWKSPVKVDVGMLVIIVDENQPPMRWKLGRIEELH
FT                 PGEDGVVRVVTVRTATRSYKRPVVKLCILPTPDSESS"
XX
SQ   Sequence 6838 BP; 1709 A; 1770 C; 1803 G; 1556 T; 0 other;
     ttgctggtcc ttcgaaccgg ataactccgg gaaggaccgt cgaggcaaca catccggatc        60
     gtctgggccg cgtgaaccgc ggggacgacg ccatcgcagc agcagcgcgc gaaaccaggt       120
     cgcgacgctg tacgacgcca ttgcaaccgg gcattcaacg ggactccgca ttgtcctgtc       180
     gggatcaaaa ggaccttttc atcacggcga ggatcggcca tcgcggtagc ttactccatg       240
     taactacctt tctggtgagg taagctaact ccgcactacg cctagtatat gtcttggccg       300
     aagccgaact ccactctaac accaacttct tttacgtcct gctgtgactt tacgacttcc       360
     gagtcaaccg gccatcggaa cggcccctgg caacttcaag cgctaccaat cgtcggtgtg       420
     gtcaaccgct ggtgcggtca actaccgacg cggacaactc gagcgagaac gattgctgag       480
     tttcgatttg gacaactacc ggtgcgggaa tccgccggtg aaaacgaaat cgactgtggc       540
     atcaactaat cagcatcgtc aacgcgttcg tgtgctgctg gtgtagcttt ggacgccggc       600
     aaggaacggc ggtactgaac gccggcctgg atcgccagta ccaatcgctg gtacggaacg       660
     gcgacgctgg ttcgctggct tgggacgcta gcgcggaacg ctggtacggg acgacaactc       720
     ggtggacgcc gaccgatcgg tgttggcagg ctggacgaag ccggccacgt gtacaaccgt       780
     gtggatttgc agccgtcgac cagggcatcg cactcaaacc tgtttgcata ggtaacacac       840
     tagtatatgc cctgccgggg caaactcatt tggttactac acaataaatc ccgttttcga       900
     tgcacacaca aacaccgctt cgagttacca ttctttggcg cgcaatccct gggtgttaac       960
     ccatccgctt caacgtgatt cttcgctact tcgtgttggt gttgctgtta gttctccagg      1020
     tgaggcacag tatatgtcac gccgaagtaa gactttttgg tactacatct gccctctcac      1080
     tctcctcggt ttggaacgat tcgatttggc tgctctgaga ctccgctttg ctgctcgttt      1140
     tctggtcgtt ggacggtttc cttcggtatc ctgctaggct gttgtttgca caggtaaagc      1200
     caacagtata tgtcggccga agtgaaaacg ttggatacta catgcactct tctcctcgtc      1260
     gatttcccgt tgaactggca actggcattc attgacgacc tgcgtggacc gtttacggac      1320
     tgtggatctg cgacgtttca ttcaaattta cccagcgcag taaactgttg ggcaggtaag      1380
     ctgccacagc cacagtatat gtcttgtcgt tgctggacag acgtacggtc actacaactg      1440
     catctcattt tcccggtcaa tcacgctcaa cgtcatgccg cgacttccga aatcaacggt      1500
     ggcgactgcc acgacctcgc tgaaggtgct tctggcgaag ctcaaaagcc atcaagcttc      1560
     gtttaacatc atttgccagt tcaaagacga ttacccggaa gatgcgaccg ccaaccaaat      1620
     caatgttcgt ctcgagcgtc tggatgaact gtgggaattg atgagcgagg tcacaagtga      1680
     catcatggcg cacgatgact tcgagggtac cactgcaaca tttgacaagg aacgatcaag      1740
     ttgggaaaat ctgtactacg aggtcaaatc ttttctgctg gacaagttga aggatttcac      1800
     gcaacccaac ctcaatcaat caacccttcc agctgatcaa tcaacgtcat caggctctat      1860
     ggatcatgtt cgtcttccgc cgattactct ccaaaagttc gatggaaaca tcgacgaatg      1920
     gttgagtttt agggatcttt acacctcact aatccattgg aagaccgatt tgccagatgt      1980
     cgaaaaattt cattatttgc gcagtagtct gataggcgaa gctttgtcac acatcgcgaa      2040
     cataaagatc tctaaggcca attacgcact agcttgggaa accctgacta aggagtacaa      2100
     caaccacaaa ctgctgaaga agaaacaggc acagtccttc tttgagcttc ctgttctggt      2160
     gaaggagtcc gcaaaggatc tgcataagct ggtggaatcg ttcaatatga tcgttcagtc      2220
     cctggaccag gtggttcagc ccaacgatta caaggatcta cttttggtgg aacttctgag      2280
     ctcaaggttg gaccctgcta cgcggcgtgg atgggaggag tttacatcta cgaaggaaac      2340
     ggactctttg aaaaatctga cggattttct cacgcgtcga gtacggattc tcgaagcgtt      2400
     acccgtgaag acgtcggagt acaaacagga ctctaacgca gccgcgaaga agaagccgtt      2460
     tcaggttcgg gtgagccaca acgctgtcca gaagcagatc tcaaaatgcc cagcgtgtcc      2520
     cgaatcgcat ggactctaca tctgtccgac tttccaaaaa atgtcggtcg cgagtaggga      2580
     atcgttcatc cgtaacaaca acctctgccg caactgtctg aggtcaggtc atcaagccaa      2640
     gaagtgcaca tctcgcttct cgtgcaggaa ctgcaaggcc agacatcata cgatggtatg      2700
     tttccaaccg gaaggaggag gaaatgcgcg tagtaactcg accgagatgg tgccgactac      2760
     gagcaacaac aatcaacgcc aatcaacgcc aggtgaaacc gcaagcacag ccgctggtga      2820
     gcaggtgtcc tcccacgtgg ctaatcgtcg aacgtcgaaa atactattgg caaccgctgt      2880
     ggtactgatc gagaacgagc atggtcttcg cgtatcggca cgtgcattgc tcgactccgg      2940
     atctgaatgc aacttcatat cggagaaact ttgtcaacaa ctgaggatac aacgggaaaa      3000
     ggtcgacgtt tcgatcactg gcatcggaaa tgccaccacc aaggctaaac accgggttca      3060
     agccaccatc aagtcacggt tttcgatctt ctcacgggac cttcacttta tcgtgcttcc      3120
     aaaggtcaca gttgatctcc caatgactca agtggacatc acggaatggg aaattccaga      3180
     cggcatcgat ctggccgatc cgtcattctt caaaccaggg agtgtcgatc tggtgattgg      3240
     cattcaggca ttcttcagct tcttcaagac tgggaaagag ctgtcgctcg gcaacggatt      3300
     gccaactcta actgaatcgg ttttcggttg gattatatcc ggcgaggtgg tagagtcttc      3360
     acaaccaacc acgatcacct gcaacatggc gctcactgat cggttggacg agttgctgga      3420
     gaggttttgg gcctgcgagg aagtaggtga ctccaacaac tactcggtgg atgaaactcg      3480
     ctgcgaggag cagtatcagc gcacggtgaa acgggcaccg gatgggcgct acacggtcac      3540
     tctaccaaaa cacgaaggag gtttggaaca gctaggcgac tcggaggaga tcgcaaccaa      3600
     acggctgtac ggattggaaa ggagactgga aaaggacttg gaattgcgta aacagtacaa      3660
     cgacttcatg acggagtaca taactctagg gcacatggag aaggtggatg acgattcacg      3720
     ggcgaacgtc aagcggtgct tccttccgca tcaccctgtt ctacgcgagt caagcactac      3780
     aacaaagtgt agggtggtgt ttgatgcctc atgcaaaact tccacgggcg tctccttaaa      3840
     cgacacactg ttggtagggc caatagtgca acaagacctg cgtacgatca tgctacgagc      3900
     tcgcgttcgc caggtgatgc tggtcgccga tgtcgagaaa atgtttcgac agaccgacat      3960
     ggacccagag gaccgaccac ttcaaagcat caaatggagg tttggaccgg acgaggaggt      4020
     ggcctcgtac gagctatcca cggtgaccta cggcaccaag cctgcaccgt tcttagcaac      4080
     acgcacactc aagcagctcg cgactgacga acgggaacgg ttcccgttgg cggcggaatc      4140
     tgtcgacgat gacatttaca tggatgatgt tatttgtgga gctgctgatc tggacaccgc      4200
     aatcaacctg cgccaacagt acgatggaat gatggccagc ggtggattga gattgcggaa      4260
     atgggcgtcg aactgggaag acgcactcaa gggagttccg aacgagaatt tggctttcgc      4320
     tgacgaggtc agctgggatc aggacgcaag cgttaagaca ctgggtctga cgtggctacc      4380
     aagaactgat caattcaggt tcaacttcca aattcctgaa atcaaatcca atcaaccttt      4440
     gacgaaacgg atcgtcacgt caattgtcgc acgacttttc gacccactcg gcctgatagg      4500
     agcttgcgtc gttggggcga aaatctacct ccaggagttg tgggatctga tcgacaagga      4560
     aactgggaaa ccgatcgact gggacacgga gttaccagcg acggtgggtg agaaaattcg      4620
     acgttttttg ctaaaaattc ctcacttgaa cgagcttcgc attccgcgct gtgtgctggc      4680
     acgaggagcc acaaagttcg agctgcactg tttcacggac gcgtctgaaa aggcgtacgg      4740
     agcgtgcatt taccttcgca gcatggacga tgaaggcaac atttcggttc acctgttgac      4800
     gtcgaaatcg aaggtcgcac cccgcaaact ccaaactctg ccccgccttg agctctgtgg      4860
     tgcgtatctg ggagcactac ttgtggaaaa ggttctgcaa gctctgaagg tctcggtgaa      4920
     cgtgtactac tggacggatt caacctgcgt tttgatgtgg ctgagggctg taccaagcac      4980
     atgggtcacg tacgtggcca atcgcgtcgc caagattcag gcgttgacgg caggtcacac      5040
     ttggcaccac gtaccaggaa cgatcaaccc agctgatctg atctcacgtg gaatcccgcc      5100
     tgacatgatc ggaagtaacg tgatctggtg ggagggaccg attttcttga aattggagaa      5160
     agaccaatgg ccatcgcaac caaccgtgtc cccggatgag gcaccggaga ggagaaagac      5220
     ggcgtgcaca gcaactcaag aacaaacacc gttcagcgtt gacttcgttt caaggtattc      5280
     ctcgtacatg aagctcgtca ggtcaacggc gtactggtta cggctgaaag ctatgctgcg      5340
     tcaccaaaca tcacctaaac aacataaatt cctctctgcg acggagttca agcgtgctga      5400
     actggccatc attggaatgg tccaacggga ggtgttcgcg gacgaactga aggctttgtc      5460
     ggaagggaag tcggttgcac gaaactctcc actgcgctgg ttcacccctg ctgttgacaa      5520
     aaacggtatt ctacgcgtgg gtggaagatt atcgcactcg caggagacac acgacaccaa      5580
     gcatcccatg gttttgccag ctaagcatcc actgactcag ctgatcttcg aggactacca      5640
     cgaacaactg ctgcatgctg gaccacaaca acttctcgca gcagttcggc agcgtttctg      5700
     gccactagga ggtcggaata cagccagatc tgtttatcac cgttgtcagc gttgttttcg      5760
     agctaagcct attgttctcc aacaacaaat gggacaattg ccatcagctc gtgttactgc      5820
     ttgtaaaccg ttcctcaaag taggccttga tttctttgga cctgtgttta cgaaggctgg      5880
     aagaggcaga actgcgatta aatcgtacgt tgcggtcttc gtttgtatgt gtacaaaggc      5940
     cgtacacatg gagcacgtct ctgatctctc caccgagaga ttcctccaag cgttacgcag      6000
     attcatcgca cggcgaggta ggccaagcga tatctactct gataacggca cgaactttgt      6060
     aggggcaagg aaccaattgt tggaactgtt caacattttg gaatctgatc gagaggtcat      6120
     atgtcgggaa gccaccaagg aaggcattaa ttggcatttc aatcccccca gcgccccaca      6180
     cttcggtggt ttgtgggagg ctgctgtccg ctcggcgaag taccatcttc tacgagtctt      6240
     ggggaacagc acggtatccg cggaggactt caacacactc ttggttcaag ttgaaggcgt      6300
     tttgaactcc cgacccttga cacctctctc agatgaccct acagacctag aacccctgac      6360
     accggcccat ttcttgactg gaggaccaat ccatgcgctg ccggaaccgg actacagcaa      6420
     cgagaagctg aaccgcttga gtcgttggca gctggtacaa cgacagcttc aggacttctg      6480
     gacacgctgg aggaaggagt acctgactca gctgcaagcc aagccaaaga attggaaatc      6540
     gccggtcaag gtggacgtcg gcatgctggt aatcatcgtg gacgagaatc aacctccgat      6600
     gcgttggaaa cttggacgga tcgaagaact acatcctgga gaagacggag ttgttcgagt      6660
     ggtgaccgtt aggacagcta ctcggagcta caagcggcca gtcgtcaagc tttgcattct      6720
     accaacacct gattccgagt cttcatgagc agtccagtcg ttctttggtt ccgtgtgcgt      6780
     cgaaggggag tttctttttt cttttcagaa tcatcagctg cttcagggtg ggtgagaa        6838
//
ID   BEL-89_CQ-LTR repbase;    DNA;    INV; 459 BP.
XX
AC   AAWU01006427;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-89_CQ_;
KW   BEL-89_CQ-I; BEL-89_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-459
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 312-312 (2011).
XX
DR   GenBank; AAWU01006427; Positions   89494   89952.
XX
SQ   Sequence 459 BP; 120 A; 105 C; 124 G; 110 T; 0 other;
     tgttggagta cgagggtccg gactatcgga gggatcgctg tcgatgggtt ccagacctgt        60
     cgacggagaa catcgcagcg atcccaccgt actactacga cctcatcatg cgcgcggaat       120
     cgtcgggagc agcgaagagc gatcggcaag actcgctcta ttgcccactt gctgcggtgg       180
     tgaacgggtc acggcaaacc cctactcaat tttattttac atttttttga tctttgttag       240
     ttttaagaat aaatttgtat taaagaataa atcgcgtttg taaggtaata aatgttgtat       300
     attgtgaagt atgtaaagtg cgtgttttgt gtttggccaa cttgggacaa gaagccgccc       360
     agcggacacc acaacttcac caggtgagaa ggaccagcac gggggaacag ctcgacggac       420
     cagagagcta tcgaaggcgg aacggctcac atccccaca                              459
//
ID   BEL-8_AA-I  repbase;    DNA;    INV; 6930 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_AA_;
KW   BEL-8_AA-LTR; BEL-8_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6930
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 865-865 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5971-6540] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4443
FT                 /product="BEL-8_AA-I_1p"
FT                 /translation="MSSQPNVRQTRSQTRAQQANANPNVGGDDRVSSHSSR
FT                 NSFIPSMMDNDGGELRDCGGCNRPNNSEQYMVQCQKCSIWFHFSCANVSTT
FT                 TVRTISFVCGKCMPGGDSVPQPTPSVISGISSSSSIRRARLERELQLMADE
FT                 KKLMEDLSRERIDMERELRERELQEKLEREKQFIARRHALLSRQDHDEERS
FT                 VRSMRSSQNSIQRTEDWVRQTGSGVVGCGDTVQQIQASTSANSGHPDEASL
FT                 VNAQGVHPSSTPLRTANESPPLGDAPMANTGSEVRSIPQTVESITIEDSED
FT                 FAEGAVGLNLNKCDPSQNPSNLPLVDLQPYEDILKLEEVPPTGAIPKINRF
FT                 GGHCYKRWSAETGELRKQNALLHHQQSEAELRVVHELMVKHRTDMDTRRKR
FT                 EMELVHQIGSLDKQHADELRRVRESEKDLRTQIEHRDLEKATLKAKIETLE
FT                 TQLVEEKERTRNSEADMRVQLIRSERECEALRLQLAEMENELQCLREMEHQ
FT                 LHDQIEAARRSEQEAVRRWREAEKEYWDLHDQVEQVISRNVDRSTDSGSSP
FT                 PLPPPPASWLEPNTLGTELSSASELNPSFPPPPPWVSVNNVLSGDGREFAP
FT                 LSGQTVGGMINMNPPIHCDSNMISSGSNIPPQMSSQFLVPPYASGLGPSPQ
FT                 QLAARQVVTKELPIFSGDPIDWPLFISSYQHSTETCGYSNSENLLRLQRSL
FT                 RGSAKDSVSSFLLHPSTVPQVLSTLQQLYGRPEQIVNNMIAKVRATPAPKP
FT                 DRLETLVSFGLVIQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFSWA
FT                 LYQEQVPVVDLNVFSDYMAKVSSAASGVTQLVNVTQKPAKEERNRQKERSF
FT                 VNTHVSTDQPKATLRENAEKVGTNGGKQKEKDVSKNNSRFCAVCNVDNHQI
FT                 ESCTSFKGLDLDGRWKAVKSHRLCARCLTSHARWPCKGEVCGINDCPKRHH
FT                 RLLHFDPPAETKTTNAVVTVHRQLSSSTLFRILPVTLYGTKGQLDTYAFLD
FT                 DGSSVTLVERSIADALGARGETETLRIEWTGGINKTIAGTEVVMMEISEAG
FT                 GSKRHRLSEVYTVENLGLPQQTTNYAELSTRFAHLSKLPVKSFRSAVPGIL
FT                 IGQSNSHLLATLKLREGKLTDPIATKTRIGWTISGSLQKPTMHRQLHIHAE
FT                 STDADLHEYVRHFFDVESLGVAVVPAVKGVEEQRSYRILEATTRRLSDNKY
FT                 ETGLLWKHDYVEFPDSRPMAEKRFKCLEKRLQQDPVLYDSFRRQIADFKVK
FT                 GYIHQATTDELEEYDLRRTWYLPIGIVINEKKPGKVRVIWDAAAKVDGTSL
FT                 NSMLLKGPDLLTPLLSVMFPYRERQVAVSADIREMFLQISIRKEDRSALLF
FT                 PYRDSPDLPMSTMVSDVAIFGAACSPAHAQYIKNMNADEQEAVFPRGAAAV
FT                 KKRHYVDDYVDSFDTAEEAVQVAMEVIEVHKRAGFHIRNWMSSDSTVLEKL
FT                 SEANRKP"
FT   CDS           4741..6930
FT                 /product="BEL-8_AA-I_2p"
FT                 /translation="MEWIAVLKQMDGLRIPRCYFPGYDPESYKNVELHVFV
FT                 DASAQAYAAVAYFRIIDHGQIRIALVSSKTKVAPLREISIPRLELMAALLG
FT                 ARLRKTVEENHSLTIQRTHFWSDSSTVCSWIKSDTRRYRQFVAFRVDEILS
FT                 LSKVDEWRWISTKLNVADEATKWGKGPSCNTDSRWFQGPEFLYSNQTNWST
FT                 VPEDNSDESNSELRETYMCNHQVRLPIVDVERFSRYDRMLRAVAYVHHFVD
FT                 NLRAVKSARSADTVGVTSEDLRKAERTLWLIAQNEAFPNETAVLKRNLELS
FT                 TACQKKIEASSSIWKQSPFADEFGVLRVGSRAANAHALVYDTKFPIILPRN
FT                 HRITDLLLDFYHRKYGHANDETVVNEVRQRFHVPRLRVEVRLARKRCMWCR
FT                 VYKSTPIAPKMGPLPAVRLQPYVRPFTYVGVDLFGPYLVKIGRSVAKRWVC
FT                 LFTCLTIRAIHLEVVTNMSTDACKKAFRRFIARRGAPQEVYSDNGTNFVGA
FT                 NRDLQTEISKIYTELGSTFTNVQTQWRFNPPAAPHMGGCWERMVRAVKSAL
FT                 ECVPVERKLDDESFATVLAEAESMINSRPLTFIPLETADCESLTPNHFLLL
FT                 SSSGVREPEKFPTDIGMALKNSWNLVKHTLDNFWRRWVVEYLPIIIRRTKW
FT                 FQDVKPIEIGDLVYIADENVRNRWIRGRVVHTIPGKDGVTRRAEVQTSSGV
FT                 LKRPATKLAVLDVASSGDDRPDVGATRRGG"
XX
SQ   Sequence 6930 BP; 1939 A; 1583 C; 1872 G; 1534 T; 2 other;
     attcttaaag aattcaaccg gtacacgatg agttcacagc caaacgtgag acaaacccgg        60
     tcacagacaa gggcgcagca ggcgaatgct aaccccaacg ttggtggtga tgatagggtg       120
     tcgagtcatt catcgaggaa ttcattcatc ccatctatga tggataacga cggaggcgaa       180
     ttacgtgatt gcggcggctg caaccggccg aacaactcgg agcagtatat ggtacagtgc       240
     cagaagtgca gtatctggtt ccatttctcc tgtgcaaacg tcagcacgac cacggtacgt       300
     accataagct tcgtgtgtgg gaaatgtatg ccgggtgggg attccgtacc gcagccaacg       360
     ccgagcgtaa ttagcggcat ttcgagttcg tcgagcatcc gtagggcgag attagagcgg       420
     gagctacagc ttatggctga tgagaagaag ctaatggagg atctcagccg ggaacggatt       480
     gatatggaac gagagcttcg tgaacgagaa cttcaagaaa agttggagcg tgaaaaacaa       540
     ttcatcgctc ggaggcacgc attgctgagt cggcaggatc atgacgagga gagaagtgtg       600
     cgtagtatgc gaagcagcca gaactcaata cagcgcacgg aagattgggt aaggcagacg       660
     gggtcgggcg ttgtcggttg tggagacacc gttcaacaaa tacaagcctc aacgtcagcg       720
     aattctggtc atccggacga ggcaagtctg gtaaacgcgc agggagtaca cccctcttcg       780
     acccccctaa gaacagcaaa cgagtcgcct ccactcggtg atgcacctat ggcgaacacg       840
     ggatcagagg tgagatcgat cccacaaacc gtagaaagca tcacaattga agattcggag       900
     gatttcgcgg agggagccgt cggattgaat ctgaacaagt gtgatccgag tcaaaatccg       960
     tctaatttgc ctcttgtgga cctacagccc tatgaagaca tcctgaagct ggaagaggtg      1020
     ccgccaaccg gcgcgatacc gaaaatcaat cgttttggtg ggcactgcta caaacgctgg      1080
     agtgctgaaa ccggagagct gcgaaagcag aacgccctgc tacatcacca acaatccgaa      1140
     gcggaactaa gggtcgtcca cgagttgatg gtgaaacata gaacggatat ggacacgcgg      1200
     cgaaagcgtg agatggagct ggttcaccaa atcggcagtt tagataaaca gcacgctgat      1260
     gagctgagac gagttcgtga atcggaaaaa gatttgcgca ctcagatcga acaccgagat      1320
     ttagagaaag ccacactaaa agctaagatt gagaccctgg aaacgcagct cgtcgaggag      1380
     aaagaacgta ctcgcaattc ggaagcagat atgcgggtcc aactcattcg aagcgagcga      1440
     gaatgcgaag cgcttcggct tcaactagcc gaaatggaga atgaactcca gtgcttacgc      1500
     gagatggaac atcaattgca tgatcaaatt gaagcggctc gtcgaagcga acaggaagcc      1560
     gttcggcggt ggagagaggc cgaaaaggaa tattgggatt tgcacgacca ggtggaacag      1620
     gtcatcagtc gcaacgtaga tcgttcaacg gacagcggca gttctccccc gttacctccg      1680
     cccccagcgt cgtggttgga accaaacacg ctgggcacag aattatcttc cgctagtgag      1740
     ttaaacccct cttttcctcc accccctcct tgggtatcgg tcaataatgt tctgtcgggt      1800
     gacggccgag aattcgctcc gttatcggga cagactgttg gtgggatgat caatatgaat      1860
     cctcctattc attgtgattc gaatatgatt tcttccggtt caaatatccc tccgcaaatg      1920
     tcgtctcagt ttctggtacc gccttatgca agcggcctcg gcccttcgcc tcagcagtta      1980
     gcggctcgac aggttgtgac caaagagctt ccaattttct ccggggatcc aatcgattgg      2040
     ccgctgttta taagtagtta ccaacattca acggaaactt gtgggtacag caactcggag      2100
     aaccttttgc ggttgcagcg cagtctgaga ggtagtgcta aggactctgt cagcagcttt      2160
     ttactccacc cgtcgacagt acctcaggtc ttgtctactt tgcagcagct atacggccgc      2220
     ccggaacaga ttgtgaacaa catgatcgcc aaggttcggg caactcctgc tccgaaaccg      2280
     gatcggttgg aaactctggt cagctttgga ctggtaatcc agaatctctg tgggcacctg      2340
     aaagcagttg gcctagagcg gcatctggcg aatccaatcc ttcttcaaga gttggttgac      2400
     aaactacccg caacagtcaa gtttagctgg gcgctctacc aagaacaagt tccggtagta      2460
     gatctaaacg tgttcagcga ctacatggca aaagtatcat cagcagcgag tggcgttact      2520
     cagctagtta acgtgacgca aaaaccggca aaggaggagc gaaatcgaca gaaagaaaga      2580
     tcgtttgtca acacccatgt ttccacggac cagcccaaag caactttgcg agaaaacgca      2640
     gagaaagttg gaacaaatgg tgggaaacaa aaggaaaagg atgtcagcaa gaacaacagc      2700
     agattttgcg ccgtttgcaa cgttgacaat caccaaatcg agagctgcac ctcgtttaaa      2760
     ggtctcgact tagatggcag atggaaagca gtaaagtcac acaggctttg tgctcgttgt      2820
     ctcacatccc acgcgcgttg gccatgcaaa ggggaagttt gtggaattaa tgattgtcct      2880
     aagcgacatc accgtctgct ccatttcgat ccaccagcgg aaactaagac gaccaatgcc      2940
     gttgtaacag ttcatcgtca attgtcgtcg tccacactct ttcgtatcct accagtcact      3000
     ttgtatggaa caaaggggca gctcgacacc tacgcattcc tagatgatgg atcgtcggtg      3060
     acactcgtgg aaaggtcaat agcagatgct cttggagcca gaggagagac ggagacgttg      3120
     cgtatcgaat ggactggagg catcaacaag acgattgctg gaacagaagt cgtcatgatg      3180
     gagatatccg aagcaggtgg cagtaaacga cacagattgt ccgaagtata taccgttgag      3240
     aatcttggct tgccacaaca gacaacgaac tatgctgagc tttcaacacg gtttgcacac      3300
     ctcagcaaac tgccggtcaa gagtttccgc tccgctgtac cgggaatctt gattggacag      3360
     agcaattcgc atttattagc tacgttgaaa ctacgtgagg gcaaattgac tgatccgatt      3420
     gcaacgaaga cccgaattgg atggacaata agtggtagtc tgcaaaagcc tacgatgcat      3480
     agacaactcc acattcatgc ggagtcaaca gacgctgatc tacatgaata cgttcgccat      3540
     tttttcgacg tagagagctt aggtgtagcg gtggtgccag cggtgaaagg cgtcgaggag      3600
     caacgatcct atcggatcct agaagcgaca acgcggcgac tgagcgacaa caagtacgag      3660
     acgggcctgc tctggaaaca tgactacgtg gaattcccag acagtcgacc gatggccgag      3720
     aaacggttca agtgtctcga aaagcgttta caacaagatc cagtgcttta cgacagcttt      3780
     cgtaggcaaa tagcggactt caaggtcaag ggctatatcc accaagcaac gacggatgaa      3840
     cttgaagaat acgatcttcg ccgtacatgg tacctgccga ttggaatcgt tattaacgag      3900
     aagaagcctg gaaaagttcg cgtgatctgg gatgcagcag caaaagtcga cggaacatcg      3960
     ttgaactcca tgttgctcaa gggcccggat cttctaaccc cgctattgtc cgtaatgttt      4020
     ccataccggg agcggcaagt agcagtgtcc gcagacatta gagaaatgtt cctgcaaata      4080
     tcgattcgca aggaggatcg tagtgcgctg ttgttccctt acagagactc cccagatctg      4140
     ccgatgagca ccatggtatc cgacgtagcg atattcggag cggcttgctc gcccgctcac      4200
     gcgcagtata tcaagaatat gaatgcggac gaacaagaag cagtattccc acgaggagca      4260
     gcggccgtta aaaaacggca ctacgtagac gattacgtgg acagttttga tacggcagag      4320
     gaagcagttc aagttgcaat ggaagtgata gaggtacata agcgtgcagg attccatatc      4380
     cgcaattgga tgtctagcga cagcaccgtg ctcgagaagt taagcgaagc taatcggaag      4440
     ccakcgaaaa acatgctatc ggaacagaat actgcattcg agcgggtgtt gggaatggcg      4500
     tggatgcaag aagacgatgt atttacgttt tcgatacagt cttgggagaa agtgcgtaac      4560
     ctactggagg acaccgcgat tccaactaaa agagaaatgc tgcgtttggt tatgagcatc      4620
     tacgatccgt tgggattgat tgcgtcgttc gtaattcaag ggaaggttat aatccaggat      4680
     gtgtggcgga caaaaactgm ctgggataat caaattccgc cggagattgc tgaacgatgg      4740
     atggagtgga tagcggtact caagcagatg gacggactgc gtatccctcg gtgctatttt      4800
     ccgggatacg acccagagag ctacaaaaac gtggagctac atgtgtttgt agatgctagc      4860
     gctcaggctt acgcagccgt agcttatttc cgcatcatag accacggtca aatcagaata      4920
     gcgcttgttt cgtcgaaaac gaaggtcgca ccgcttcgag aaatttcgat accacggctg      4980
     gaattgatgg cagcgttgct aggagcacgc ttgcgaaaga cggttgagga gaatcactcg      5040
     ttaacgattc aaagaaccca tttttggagt gactcgtcta cggtgtgttc gtggatcaaa      5100
     tcggatacac gacggtatcg tcaatttgtc gccttcagag tagacgaaat attgagcctt      5160
     tcaaaggtcg atgaatggcg gtggatctcc acaaagctca acgtggctga tgaagctacc      5220
     aagtggggga aaggcccttc atgcaacaca gatagccgct ggttccaagg accagaattc      5280
     ctgtacagca atcaaacgaa ttggtcgacg gttccagaag acaacagtga tgaaagcaac      5340
     agcgaattgc gagaaacgta catgtgcaac catcaagtca gactgccaat agtggacgtg      5400
     gaaaggtttt ctcgatacga tagaatgctg cgtgcggtag cgtacgtcca ccacttcgtt      5460
     gataacctac gcgcagtcaa aagtgccagg tctgcagata ctgttggagt gacaagcgag      5520
     gatttacgaa aagcagagcg gacgttgtgg ttgatcgcac agaatgaagc attcccgaac      5580
     gaaactgcag ttttgaagcg taatctggaa cttagtacgg cgtgccagaa gaaaatagaa      5640
     gcatctagca gtatttggaa gcagtcacca ttcgccgatg aattcggagt attgcgagtt      5700
     ggcagtagag ctgctaatgc gcacgcattg gtctacgata cgaagttccc aattattctg      5760
     cccagaaatc atcgaataac ggatttattg ttggacttct accaccggaa gtacggccat      5820
     gccaatgatg aaaccgtagt taatgaagta cgtcaaagat tccacgtgcc tcgtttgcgt      5880
     gtagaagttc gcctagctag aaaacgttgc atgtggtgtc gtgtgtacaa gtcaacgcct      5940
     attgctccaa aaatgggccc gcttccagca gtgcgattac agccatatgt acgcccgttc      6000
     acgtacgttg gcgtagattt atttgggcct tatttagtga agattggacg aagtgtagcg      6060
     aaacgatggg tttgtctttt tacctgcctt acaatccggg ccatacatct tgaggtggtc      6120
     acaaacatgt ccactgatgc gtgcaagaaa gcttttcgaa gattcatagc aaggcgtgga      6180
     gccccccagg aagtttactc cgataatggc acaaattttg taggagctaa tcgagatcta      6240
     caaactgaaa tcagcaagat ttatactgaa ttgggcagca cattcacgaa tgtccaaaca      6300
     cagtggcggt tcaaccctcc tgccgctcct catatgggag gttgctggga aaggatggtt      6360
     cgcgccgtga aatctgcact agagtgtgtt cccgttgaac ggaaattgga cgatgaatcg      6420
     tttgctaccg tgttggctga ggcagagagc atgattaact cccgaccact aacgtttatc      6480
     ccgctggaga cggctgactg tgaatcactg actcctaatc actttctgct gttgagctca      6540
     agtggcgtgc gagagccgga gaagttccct acagacatag gaatggcgct aaagaacagc      6600
     tggaatttag tgaagcacac tttggataac ttctggcgac gttgggttgt agaataccta      6660
     ccaatcatca tacgccggac taagtggttc caagacgtaa aaccgataga gataggagat      6720
     cttgtctaca tagcggatga aaatgtcagg aatcggtgga tacgagggcg agtagtccat      6780
     acgattccgg gaaaggatgg agtaacgcgc agagcggaag tacaaacatc aagtggtgtt      6840
     ttgaagagac ctgctacgaa gttggctgtg ctagacgtgg caagttctgg tgacgaccgt      6900
     ccggatgttg gtgcgacacg gcggggagga                                       6930
//
ID   BEL-8_AA-LTR repbase;    DNA;    INV; 476 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_AA_;
KW   BEL-8_AA-I; BEL-8_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-476
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 866-866 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 476 BP; 160 A; 71 C; 101 G; 144 T; 0 other;
     tgttcaccgc aacagcccct cgtaaaggac acccctgcca agagccattg tgagccattt        60
     ggcccaagtg tggattgacg tttgagatga tgacgggcaa gctgataagc gatatgtcat       120
     agattgataa caacgatgat aagcaaagtt gattggtcgg ctattgaaaa ttgaaattgt       180
     tttggataaa ttacggttta ttgcgaatat ttatatttac actgtaagtt gaattacata       240
     tatcttatga actaggtcaa taaaagtgtg aatttacaga ttaaggaatt aaaatacgtt       300
     tgaacaagtt gtgaattgga agagtagttg tcggagactg aattgtaagt acaattaaag       360
     taaagctggt ttgtaaactg atcctaaata aaaaatactt ttagctttaa gctgcttaac       420
     acatatatcg ggacgtgttt tctgctgaaa gaactccgga atttccaatc gcaaca           476
//
ID   BEL-8_AnFu-I repbase;    DNA;    INV; 5433 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5433
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 701-701 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..5375
FT                 /product="BEL-8_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MPVQPVVLASRRTILLVSLSRYEKFLEDFVPERDQAE
FT                 VEIRVKRFEKLCLDLESVQQGLEDSAATAEEIAQNAALRENFENRLIYVQS
FT                 QLQIKLPSEQVPIPQTSTGLNPLKGIKLPTIALPEFTGDYMQWLTFRDTFE
FT                 CLIHANIDLPAIQKFHYLRAAVKGEAAQVIESITISAANYELAWNTLTERY
FT                 SNEYLLRKRHLQAMFAIPAAQKESVSTLHHLVDEFERHKKILQHLGEDTDT
FT                 WGSILEHLLCTKLPIITLRDWEEHASNNADPSYDSLISFLHRRMRVLETLL
FT                 VNNRHTSQVHDLSHSPRMSFSRQASFASTSNETPNCTLCKSAHYLFKCPQF
FT                 EGMDPKERHRFTMSARLCLNCLRENHRARDCPSPHKCRYCNAAHHTKLHYV
FT                 HNTTSTTALPHHTPDTTRDHTATNNAQRTFAAALQQAPEQVLLQTALINII
FT                 DDFGIAHPARALLDSASQPNLISDRLAHRLRLKKSNVNITIVGAGQSTKTV
FT                 RESVHAQIVSRSSSFTVNTELLIVDNLIANIPTRDIDRNDWTIPPGFALAD
FT                 PLFDKAAPVDIILGARHYHTVFENASQFHPAPHLPVMINSVFGWVVSGATS
FT                 VGSSAPKTVSNASYRVVCMASLEESLQRFWQLEDLTVNDAYSPDERYCETL
FT                 YKTTTKRDDTGRYIVRLPKQPDFDQKLGLSRLQAIRRFELLERRLERDPAL
FT                 RESYQTFMKEYLELGHMSRISTECDDTAAYYLPHHPVFNASSTTTKVRVVF
FT                 DGSAKTSTGHSLNEALRVGPIIQDELIDIILRFRTYKIAVVADIAKMYRQV
FT                 ILHPDDRKLVRLFFRFSPHSPIELYELNTVTYGLSPSSFLATRTLLQLAED
FT                 EGADYPLATPALKHNFYVDDFIGGANSVDEARKLRQQLSELLSKGGFELRK
FT                 WTSNCLDVLTGLPVEHIGTQSSLQFAPNETVKALGIAWKPELDVLCFESTV
FT                 TMETTSITMRSILSNIARMFDPLGLIAPVIIRAKLLMQELWLQKIGWDDPV
FT                 PAHICNKWKSVTDDWKDLADFKSERYVLLPNSEIQFHIFADASEVAYGACI
FT                 YARCEDQQAQVRVTLLASKSRVAPLKRVTLPRLELCAAVLAVHLHHRVRRA
FT                 MKIDATESVFWSDSTVTLNWIASPPNTWKTFVANRVAEIQNYSHPRQWKHI
FT                 PGTSNPADLVSRGMSAAEMLKSSMWRCGPDWLALPASNWPISNPSLATETD
FT                 METRQVSAAVANIHTIHPWFNLSSSYTKLLRIIAYCTRFIHNTKHKIRTQP
FT                 SAPFTSAALSITPKFIEAAKIVLCKLAQQDEFSSEIRLLKIGETVGKHSPL
FT                 RRLNPFLDEEGIVRVGGRLKLAQLPYQSKHPIVLPKNHKLAHLIAVHYHEK
FT                 LMHGGGRLLLSQIREEYWPLDGRRLVKGIVRNCFRCIRQDPSLTQQQTGQL
FT                 PYQRITPSRPFSVTGVDYAGPFYLKPTHKRAAATKCYLCVFVCFSTKAVHL
FT                 ELVGDLTTAGFLAALHRFTSRRGLPSDIHSDNGKNFEGAAHELNELFELFQ
FT                 NEQLQNVIASKCSDLGITWHFTPPKAPHFGGLWEAAVKTAKRHLYRHLGSS
FT                 RLSYEGYCTILQQIEAAMNSRPLLPLTDDPNDLAALTPAHFLIGTSMHAVP
FT                 VPDYTRLKAYTLDELQSWQLLVQRFWKHWATEYLQEMQKDNKVVNRSEIVP
FT                 GRLVILVDDSLPITRWPLARIVEIHPGEDQLTRVVKLKTAKGIITRPVTKI
FT                 CLLPVAKPSA"
XX
SQ   Sequence 5433 BP; 1423 A; 1345 C; 1275 G; 1390 T; 0 other;
     tggtgccgtg accaggatgg tacttgctcc tggtttttaa tcgcgaattt cgatcatcac        60
     accgttaccg taacatcgtt tcctgctttc gtatcacatt cgtcgtgatt ttgtgaaacg       120
     cacagctgat tttgccgccg cacgcaaaac actgtcaatc ccacgcactc atagtcactt       180
     acgcaatgcc cgtgcaaccc gttgtcttgg cgtcccgacg gacaattttg ttggtgtctc       240
     tttcgcggta cgagaagttt ttggaggatt tcgttcctga acgggaccaa gcagaggtgg       300
     aaatacgtgt aaaaaggttc gagaagctat gccttgatct agaaagtgtt cagcaaggtt       360
     tggaagattc tgctgccact gcagaagaaa tagcgcaaaa tgctgctcta agggagaatt       420
     tcgagaatag gctgatctac gtacaatcgc agttacagat taagttacca tcagaacaag       480
     ttccgatccc acaaacgagc accggattga atccgttaaa gggcatcaaa ctacccacta       540
     ttgcactgcc cgaattcacg ggagattata tgcaatggtt gacattccgc gatacctttg       600
     agtgcctgat acacgcaaac atagatttgc cggcaataca aaagttccat tatttgcgcg       660
     ccgcggttaa aggtgaagcg gctcaagtga tagaatctat caccataagt gcagctaatt       720
     atgagttagc atggaacacg ctaaccgagc gatactcaaa cgagtatttg ctgcgaaaac       780
     gccatttgca agcaatgttt gccattcctg ctgcccagaa ggaaagcgtt tcaacactgc       840
     accatcttgt ggatgaattt gagcggcata aaaagattct acagcacttg ggagaagaca       900
     cggacacttg gggtagcatt cttgagcatc tgttatgcac taaactccca ataatcacct       960
     tacgcgattg ggaagagcac gcatcaaata acgccgatcc gagttacgat agtttaattt      1020
     cgttccttca ccgtcgtatg cgtgtattgg agacgttgtt agtaaacaac cgtcatacgt      1080
     cacaggttca tgacctgagt cactcaccga gaatgtcctt ttcacgccaa gccagttttg      1140
     cttcgacatc aaatgaaacg ccaaattgta cgttatgcaa atccgcgcac tatcttttta      1200
     aatgcccgca attcgaaggg atggacccga aggagcgtca ccgttttacc atgtccgcgc      1260
     gtttatgttt gaattgtctg cgagagaatc acagggctcg tgattgccca tcgccgcaca      1320
     aatgccgtta ctgtaatgcg gcacaccaca cgaaattgca ctacgtacac aacaccacta      1380
     gtactactgc acttccgcac cacacacccg acaccactag agatcacaca gccaccaaca      1440
     acgcacaacg cacttttgca gcagctttgc agcaagcacc cgagcaggtc ttactccaaa      1500
     ctgcgttgat caacattatt gatgatttcg gaatagctca tcctgcgcga gcgctgttgg      1560
     acagcgcatc gcagccgaat ctaataagcg atcgactcgc tcatcggcta cgtttaaaga      1620
     aaagtaatgt gaacattact attgttggag ctgggcaatc tacaaaaaca gtacgtgaat      1680
     ccgtacacgc ccagattgtc tctagatcca gttcgtttac ggtgaacacc gagttgttga      1740
     tcgtagacaa tttgattgcg aatattccga cgcgcgatat tgaccgcaac gattggacca      1800
     taccacctgg tttcgcttta gcagatccgt tgttcgataa agctgccccc gttgacatca      1860
     ttcttggcgc tcgtcattac catacagttt tcgagaatgc atctcagttc catccagcac      1920
     ctcatctacc cgtcatgata aatagtgtct ttggttgggt agtgagcggc gcaacgtccg      1980
     ttggaagttc tgcacctaaa accgtttcca acgcttcgta tagggtcgtc tgtatggcat      2040
     ctttggagga gtcgctacaa cgattttggc aattagaaga tttaacggtg aatgacgcat      2100
     actcaccgga tgaacggtat tgtgaaaccc tttacaagac cactaccaaa cgtgacgaca      2160
     ccggcagata tattgtacgc ctaccaaagc agcctgactt cgatcaaaag ctcggccttt      2220
     ctagattaca ggccatccgt cgtttcgagc ttcttgagcg gagattggaa cgcgatcctg      2280
     cacttcgaga atcatatcaa acgttcatga aggagtattt ggaactgggg cacatgtctc      2340
     gtataagcac tgaatgtgac gatacagctg cttattattt accacaccat ccagttttta      2400
     atgcatcaag taccactaca aaggttagag ttgtgtttga tggctcagct aaaacgtcga      2460
     ctggacattc actgaatgaa gctttacggg ttggacccat aattcaggat gaactcatcg      2520
     acatcattct tcgttttcgt acctacaaga tcgctgttgt agctgatatt gcaaaaatgt      2580
     atcggcaagt cattttgcat cccgatgatc gaaaattggt tcgcctcttc ttccgcttct      2640
     caccgcattc gccgattgaa ttgtacgagt tgaatactgt gacatatggt ttgtctccat      2700
     catcgttctt ggccactcgt acattgttgc agctggcgga agatgaaggt gctgattatc      2760
     cacttgctac acctgcgctg aaacacaatt tctacgttga cgacttcatt ggtggagcca      2820
     acagcgtgga tgaagctcgc aagcttcgtc agcagctatc tgagttgcta tccaagggag      2880
     ggtttgagct cagaaagtgg acatccaact gtttggacgt gcttaccggt ttaccagtgg      2940
     aacacatcgg cacacagtca tcgctgcagt ttgcgccgaa cgagacggta aaggcacttg      3000
     gcatcgcttg gaagcccgaa ctcgacgttt tgtgtttcga gtcgacggta acaatggaaa      3060
     ccaccagcat caccatgcgg tccatattgt caaacattgc tcgaatgttt gatcctcttg      3120
     ggttgatcgc tccagtcatc atacgcgcga aactgctgat gcaggagttg tggctgcaga      3180
     aaatcgggtg ggatgatccg gttcctgcac atatctgcaa caaatggaaa tcggttactg      3240
     acgactggaa ggatttggct gacttcaaaa gtgaacgtta tgtgctttta cctaactctg      3300
     aaatacagtt ccatatattt gcagacgcgt cagaggttgc atatggtgcc tgtatttacg      3360
     ctcgttgtga ggaccagcag gcacaggtac gagtgactct gctcgcgtcg aaatctcggg      3420
     tggctccact gaaacgtgtt acgttaccga gattggagct ttgcgcagcc gtgctagcag      3480
     tacatctgca tcatcgtgtt cgacgggcga tgaaaatcga tgcgaccgaa tcggttttct      3540
     ggtcggattc aactgtgacg ctaaactgga ttgcgtctcc acccaacacc tggaaaacat      3600
     tcgtggcgaa tcgtgttgct gagatccaga attattcgca tccccgacaa tggaagcaca      3660
     ttcccggtac atcgaatcct gcagacctgg tgtcccgagg gatgtccgca gctgagatgc      3720
     tgaaaagttc gatgtggcgt tgtggtcccg attggttggc tttacctgcc tctaactggc      3780
     ctatttcgaa tccatcactg gctactgaaa cggatatgga aactcgtcag gtgagtgctg      3840
     cagtcgccaa tatacatacc attcaccctt ggttcaattt gtcgtcgtca tataccaaat      3900
     tgttacgcat aatcgcatac tgcacacgtt ttatacacaa cacaaaacac aagatacgta      3960
     cgcaaccgtc agcaccgttt acctccgctg cattgtcgat tacacccaag ttcatcgaag      4020
     cagcgaaaat cgtactatgc aaactggcgc agcaagacga gttttcatcg gaaatccgac      4080
     tactgaaaat aggagaaacc gtgggaaaac actcacctct aagacggttg aatccatttc      4140
     tcgacgaaga aggaatagta cgagtgggag ggcgtttgaa gcttgcacag cttccttacc      4200
     agtctaagca tcccatcgtg ctccccaaga accataagct agctcatctc atcgcagtcc      4260
     actaccacga aaagcttatg catggcgggg gaagactatt gctttcccag atacgagagg      4320
     agtattggcc actcgacgga cgacgtctag tgaaaggaat agtaaggaat tgttttcgtt      4380
     gcatacgaca agatccgtcg cttacgcaac aacaaacggg acaactcccg taccaacgca      4440
     tcaccccaag ccggccgttc tccgtaaccg gagtggacta cgccgggccg ttttacctca      4500
     aaccaacaca caagagagct gctgccacta aatgttactt gtgtgtgttc gtgtgctttt      4560
     caaccaaggc ggttcacctg gagctggttg gcgatctcac cactgcagga ttcttggccg      4620
     ctttgcatcg gtttacatcc cggcgcggat taccatctga tatacactcg gataatggga      4680
     aaaactttga gggtgcagca cacgaactta atgaactgtt tgaattgttt cagaacgaac      4740
     agctacaaaa cgtcatcgca tccaaatgtt ccgacttggg tatcacttgg cactttaccc      4800
     cacctaaggc cccacatttc ggtggattgt gggaagccgc ggtaaagacg gccaaacgac      4860
     atctctatcg gcacctaggc agttcgaggc tgtcgtatga agggtactgc accattctgc      4920
     agcagataga agcggcaatg aactcgcgtc ctttgttgcc gctgacggat gacccgaatg      4980
     atctggcggc gcttactcct gcgcacttcc ttattggcac gtcgatgcat gcggtgcctg      5040
     ttcccgacta cacccgcttg aaggcctaca cgttagacga attgcagagc tggcaattgc      5100
     ttgttcaacg cttctggaag cattgggcaa cagaatatct gcaggagatg cagaaggata      5160
     acaaggtggt gaatcgtagt gagatagtac ctggcagact ggtcatccta gtggacgatt      5220
     cgcttcccat cacccgatgg cccctcgcac gcattgtcga aatacatccc ggagaggatc      5280
     agcttacgcg tgtagtgaag ctgaaaacgg cgaaaggtat aattacgcgt ccagtaacta      5340
     aaatttgtct gttacctgtt gcgaagccgt ctgcttagta gcacgtgtaa cttgttttgt      5400
     tttctttatg acgttctgtc atggggggga gta                                   5433
//
ID   BEL-8_AnFu-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-237
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 714-714 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 237 BP; 86 A; 40 C; 52 G; 59 T; 0 other;
     tgttgacgcg tagacgtcaa gagggccatt tgacgaaagc tagtttcgtc aagtgagtag        60
     tgagaaaata gtgagtagtg agatggtctc tcacgatagg aacactcatg aaaaaactta       120
     taaatagggc tagaaaaatg gaataaatcc tcttacattt tggaacctcg aaaaactaca       180
     acctgtttgg taaatatcgc aacaaaaaat cgatccgaaa tttcgcgaag ctgttca          237
//
ID   BEL-8_BTa-I repbase;    DNA;    INV; 2411 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2411
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 595-595 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~97% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..2325
FT                 /product="BEL-8_BTa-I_1p"
FT                 /translation="MPGDEFPEKSNPGSDKGPGQNPKEEAQQAYSSLLVLV
FT                 DHRADIFAAVQKIFDKINREISPNNVGQFLFSMDRIVKLQEKMDGVRQEMI
FT                 RLNQKLSEKYRVSLDKQQEQFDALIENCQALYLINKEKAEATKSSTARTGV
FT                 PSNHGENKVEHQVKLPRLELPKFSGKLRDWSAFHSLFETSIHKSKSLSNME
FT                 KFQYLISRLEGEAKQLVGTLELTAENYIVAWDALCLRYNNERRHIHYHLSS
FT                 LLELPDAPQNTALPGLLSKVREHMNALTALKRNENEYALLLTTVIIQKLSF
FT                 GIRRRFEDSREDSTKYPEFKELESFLQAECAQMDNYKSKFNNDPAPKNTYN
FT                 KGGNSRNFVSIGPKEHNGKKTNKNRNQKCALCSENHPLYWCEDFKNLPVDS
FT                 RIAKVKSWNRCKNCLSDTHSDARNCKCKYTCKICREPHHTLLHIPEKSFVA
FT                 TSPGCERDSQNPSISCVNVNLPAQVKGSKDHSILLGTALVGLKLPNGHFET
FT                 VRAVIDSAAMSTFITKTCAQRLGLKINEYHAEVSGLGNQNLKFWGDVDISI
FT                 KPLHQQRPVLTTKAEVLTIITDQLPTTPLNPEIVQQWQHLTLADPGYGKPS
FT                 EIDLLIGAELFSYIYTGNKILTEDKCCALESIYGWVITGKLKDSSKESTKK
FT                 RTFLTTARDAEINRILRSIWEPEEPQPDQNFEIITPHEIRLMRDYLRRNEG
FT                 KRRVKQFRLHFQSGQFKRMYPSEVEQLLRF"
XX
SQ   Sequence 2411 BP; 793 A; 528 C; 499 G; 591 T; 0 other;
     tggtccctcg ggccggatct tatttaaccc tcttaacttt aagataaggt taaagaacag        60
     aacaagcgct agggaaaata gtccagacta taggacttag gattttcagc actttagatt       120
     tctgatttca gcatcatgcc gggtgatgag ttccccgaaa aatcgaaccc tggttcagac       180
     aaggggccag ggcaaaaccc caaagaagag gcacaacagg cgtactcttc tttactagta       240
     ctagttgatc acagggccga cattttcgcg gcagttcaaa aaatttttga caagataaat       300
     cgagaaatat ctccaaataa cgtcggccaa tttttgtttt cgatggacag gattgtcaaa       360
     ttacaagaaa aaatggacgg tgtccgccaa gaaatgatca ggctaaatca aaagctctcg       420
     gaaaaataca gggtttcgtt agacaagcaa caagagcagt ttgatgcact gattgaaaac       480
     tgtcaagcct tatacctaat aaacaaagaa aaggcagagg ctacaaagtc ctccaccgcc       540
     agaacagggg tcccatccaa tcatggcgag aataaagttg agcatcaggt gaagctacct       600
     agacttgagt taccaaaatt ttctggtaaa ctgcgagatt ggtctgcttt ccacagctta       660
     tttgaaacga gcattcataa atcaaaatca ctttccaaca tggaaaaatt ccaatatctc       720
     atttctagat tagaaggtga ggctaagcag ctcgtgggta cgctggaact gaccgccgaa       780
     aactatatcg tagcatggga cgccttgtgt ttacgttaca acaatgaacg gcgacatatc       840
     cactatcatc tgagcagctt actcgagcta ccggatgccc cacaaaatac agcgttgcca       900
     ggtcttctct ctaaggttcg tgaacatatg aatgctctca ccgcacttaa aaggaatgag       960
     aatgaatatg cattgctgct tactacagtc ataatccaaa agctttcttt cggaattcgc      1020
     aggcgttttg aggactccag agaagattct acgaaatatc cggagtttaa ggagcttgaa      1080
     tctttcttgc aggcagaatg cgcacaaatg gataattaca aatcaaagtt taacaacgat      1140
     cctgctccga aaaataccta caataaagga ggaaattcga gaaattttgt aagcatagga      1200
     ccaaaggagc acaatggcaa gaaaactaac aaaaatcgaa atcagaaatg cgccctgtgc      1260
     tccgaaaatc atcctctata ttggtgcgag gattttaaaa atcttcctgt ggattctcgt      1320
     attgcaaagg tcaaaagctg gaatcgatgc aaaaattgcc tctcggacac tcattccgac      1380
     gcgcgcaact gcaaatgcaa gtacacctgc aaaatctgca gagagccgca tcacactctc      1440
     ctgcatatac cggaaaaatc ctttgttgcc acatcgcccg gctgcgaaag agattctcaa      1500
     aatcccagta taagttgcgt aaatgttaat ttgccagcac aagtgaaagg gagtaaagac      1560
     cattccatac ttcttggaac tgcgttagtt ggcttaaagt taccaaacgg tcattttgaa      1620
     accgttagag cagtcattga ctccgctgca atgtcaactt tcatcactaa aacctgcgcc      1680
     caacgcctag ggcttaaaat taacgaatac cacgccgaag tttcaggact tggtaaccaa      1740
     aacctaaaat tctggggaga tgtagatata agcatcaaac ccttgcatca gcaaagacca      1800
     gtacttacta ccaaagctga agttttgacc atcatcacag atcagttacc cacgactcca      1860
     ctaaacccag aaatcgtgca acaatggcag catctcacgc tagcggaccc gggctatggc      1920
     aagccctctg aaattgatct cttaatcgga gcagaacttt tttcctacat ctataccgga      1980
     aacaaaattt tgacagaaga taaatgctgc gctcttgaga gtatttatgg ttgggtcatt      2040
     accggcaaat tgaaggattc gtcaaaggaa tcaacaaaaa aaagaacgtt cctaacaacc      2100
     gctcgcgacg cagaaattaa cagaattttg aggagcattt gggaacctga agagcctcaa      2160
     ccagatcaaa acttcgaaat catcaccccg cacgaaatta ggcttatgcg agactacttg      2220
     cggagaaatg aaggaaaaag gcgcgtaaaa cagtttaggc tacatttcca atcagggcaa      2280
     tttaaacgca tgtaccccag cgaggtagag cagctccttc gattttagtg cagttttatt      2340
     gatcactgtg ttgaagattt attatgtgtt tgtataaatt ttttggcgta ccaaaaaatt      2400
     ggtggggggt a                                                           2411
//
ID   BEL-8_BTa-LTR repbase;    DNA;    INV; 714 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-714
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 573-573 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~97% identical to each other.
XX
SQ   Sequence 714 BP; 175 A; 173 C; 134 G; 232 T; 0 other;
     tgaatgggac aagagtcaat tttgtgttta tttcgcccaa gctgggcatg caaattaaga        60
     gatttgtatt ttcttttaaa tttctagttt atttgtttcc tggcattcga cacgccaagg       120
     atttaaagaa ttttattatt tcacttaatg gttgcataat gaggccgggg catgataagc       180
     ggttgtataa ccagttgcgt aactgccagg ccagttatca ccgattatgt aatcacatca       240
     cgccaccttt cacgattatg taaccaccct tataaatacc gcggcaggag ccacttttag       300
     ttcagttgct atttctcgtt caaagcactc acaacgagca cgcccgtcta aggttgctct       360
     agcacgcccg tttaaggctg ctttctctat gcttcaaagg gcacgcctgt ctaaggctgc       420
     cttactcatg ctctaaggga cacgcccgtc taaggctgtt tccttccact ggcacgcccg       480
     tctaaggctg ctccagcacg cccgtctaag gctgcgattc tacttacttc agaactcttt       540
     tcatttcatt atattatttt ctccattcgt tctctatgat gaatttagag tttcatttct       600
     atacgggctc tgttactatc ccgtccttat tctgagagaa ctttaacaac ctagcaaatt       660
     gatccggcaa tttcattttc aaaggagcct tgaaaaaagg cccattctga ttca             714
//
ID   BEL-8_CQ-I  repbase;    DNA;    INV; 5685 BP.
XX
AC   AAWU01032143;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_CQ_;
KW   BEL-8_CQ-LTR; BEL-8_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5685
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 169-169 (2011).
XX
DR   Genome; AAWU01032143; Positions    7446   13130.
XX
CC   Positions [4630-5220] - Integrase core
CC   'CCGGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..1706
FT                 /product="BEL-8_CQ-I_3p"
FT                 /translation="MSKQLKQHLIRRNNILGSLKLIHHYDDNFVFDRDFPQ
FT                 LKFRLEKLDHLWDEFNEVQAEIEFSQPLTDEPDAVRTQFENDYFELKGALS
FT                 SKLEIATQNTHAPPSPIAPPAFHSSVRLPELKIPDFHGDYDEWLNFHDLFN
FT                 SLIHSNHHLSSVQKFQYLKSVLKGDAARRIQNLDVNTANYTLAWNIVKKKY
FT                 DDKNLLLKQHYMALLSIPSVHKESSTALSELADEFEKRVGVLNKLEESKDH
FT                 SNSFLVTLLSIKLDPGTQTAWEHSLEDDQKPTYTDLVAYILKRSRTLQSLK
FT                 LSQTSQHGTKPEPKVEHKSTRSKTSAYHSTNTSDTLSQCKLCKQEHMLHQC
FT                 DEFKKLSPQNRFDVAKKHGLCLNCLKANHMMKACTAGSCRTCNKRHHTLLH
FT                 LNTAAADKPPASTVQVAHCQQSSRLASVVESPSSVTYTAEQCHVVPREHAD
FT                 RLR"
FT   CDS           3448..5631
FT                 /product="BEL-8_CQ-I_2p"
FT                 /translation="MLKIPRRVLIDHSVVIELHCFSDASDKAYGACVYVKS
FT                 TNSYGRSKVNLLISKSRVCPRRRLTIPRLELCAALLGAQLTAAVLEATNLS
FT                 CPVVYWSDSAIVLHWIASCSSTWKVFVSNRIAEIQRLTQGMPWRHIPTHLN
FT                 PADLISRGLLPSELVGCVLWEHGPEVIELPSSHWPQNCIELSPLHMQARDD
FT                 EARQTVSVLTTSSLEDRIQIQDHSALLPLLRSVSWIRRFTDNCRSRPEERR
FT                 NGFLKFREIDDTLKLLITLTQRTHFAQEIKHLLKNPGPVRKDFDLKSQIKT
FT                 LNPFIDPEGLLRVHGRLENSSLPFDTKYPIILPAKAHLTHLIAKNTHWDTL
FT                 HSGPQLLLSTLRQRYWPVRGRDVARRVVNECLDCFHCKPRSIDQMMGPLPA
FT                 ARLVPSRAFASSGVDYCGPFAVRPPNRRGASVKVFVAIVVCMWSKAVHIDM
FT                 VYDLTSASFINVLKRLVGRRGRVTDLYCDNARTFVGANRHLEELRRAFDAM
FT                 HSSDAVAAHCAEKGITFHFNPARSPHHGGLWEAAVKSFKHHLYRVMKDTLL
FT                 TIDDFNTLIVQIEGVLNSRPLTPLSSDPTDVVALTPGHFLVGEPLFSIPEP
FT                 DLCDISINRLNSFQKMQQKLQHFWRAWSRDYIGHLQNRKKWPVVRPNIEVD
FT                 TMVLLKQDNAPPMRWKLGRIEAVFPGKDGLVRVVDVRTAHGTYRRAITEVC
FT                 PLPIEQPSEEPSEQPSDLPTDAAVQPSH"
XX
SQ   Sequence 5685 BP; 1375 A; 1663 C; 1385 G; 1262 T; 0 other;
     ttttttggtg ccgaaacccg ggattgcctg gtcattacca tcgtcggccg gcctgaggag        60
     aacatcgtgg gaatcttgga ctccggcaac aaacgtcgtc tgtcggagag tagctgattt       120
     cgtcctacga gggatcttcg gtcggaacaa tctgcccacg gcagtcttct cgacctggac       180
     atttgtacga ggcaaggaca tcgttggact gtgcacgtgg aaaccgcgtg gacgaggaag       240
     caggtctagc caagcgagca aaggtaacct cacagcagca gataaggtga gttacaagtg       300
     aaccacaatt gcgacaaata aagtgtgaat tcacggggtt tgaggatttt gcgctcatca       360
     caatgtcgaa gcaactgaag cagcatttga ttcgtcggaa caacattttg ggttccctta       420
     agttgattca ccattacgac gataattttg tgttcgatag ggatttcccc caactcaaat       480
     ttcgcctcga gaaactggat catctttggg atgaattcaa cgaggtgcaa gctgaaattg       540
     agtttagcca acccttgacc gacgagcctg acgctgttag gactcaattt gaaaacgact       600
     actttgagct gaagggagct ctttcgtcga aattggaaat cgccacccag aacactcacg       660
     cgcctccctc ccccattgct ccacctgcat ttcattcctc cgttcggctc cccgaattga       720
     aaatccctga tttccacggg gattatgatg agtggttgaa ctttcacgat ctgttcaact       780
     cacttattca ttcgaaccac catttgtcgt cggtgcagaa gtttcaatat ttgaaatctg       840
     tgctgaaagg ggatgctgcg cggcgcatcc agaatttgga tgtgaacacg gctaactaca       900
     cgctcgcgtg gaacattgtg aagaaaaagt acgatgataa gaatctgctc ctgaaacagc       960
     actacatggc gctgttatct attccttctg ttcacaaaga gtcgtcgaca gcgctctcgg      1020
     aactcgctga cgaatttgag aagcgcgttg gcgtgcttaa caagcttgaa gagtccaaag      1080
     atcactcgaa ctcgttcctc gtcacccttc tcagcatcaa gcttgatcct ggaacccaga      1140
     cggcgtggga gcacagcttg gaggacgacc agaaacctac ttacaccgac ctggttgcat      1200
     acatcctcaa gcgctctcgc actttacaat ctctaaagct ctcccaaact tcgcaacacg      1260
     gcacaaaacc cgaacccaag gtcgaacaca aatccactcg ctcgaagacc tcagcgtacc      1320
     actctaccaa cactagtgat acgctatccc agtgcaagct gtgcaagcaa gagcacatgc      1380
     tgcaccagtg cgatgaattt aagaagcttt cgccacaaaa ccgcttcgat gttgccaaaa      1440
     agcacggtct ctgcttgaac tgcttaaagg caaaccatat gatgaaagca tgcactgcgg      1500
     gttcgtgccg aacgtgtaac aaacgccacc acacactgtt acacctgaac acagctgccg      1560
     ccgacaaacc accggcctca actgtacaag ttgcccactg tcaacaatcc tcacgattgg      1620
     cttcggtcgt cgagtctccg tcgtcggtta cgtacactgc cgagcagtgt cacgtggtcc      1680
     ctcgggaaca cgctgaccgc ctacgttaga gtgatgtgtg cagatggcac acacatccat      1740
     gctcgagccc tgttggattg cgcctccgaa gctaatttcg taaccgaatc tctcgctcag      1800
     gctctgcggt cgaaacgcaa acccgcaaac gtcgatgtgt acggtatcag tcaaactgtc      1860
     aagaaagtga agcaccaaac cacaatcact gtttcgtctc gtgtgggccc gtacactaca      1920
     agcatggact ttctgattct gccctcccta accagaatcc ttcccactac caacgtggat      1980
     gtttcgaagt gggtcattcc tcgccacctc ccacttgccg atccaaaatt caacatcgct      2040
     catgacgtcg acatgatcat tggcgtcaag cactttttcg ccatcctgca gggtgaacaa      2100
     ctatcgattg gatctggcct accaacacta cgcaacactg tctttggata cgtcgtcgct      2160
     ggcgacacgg atgcacctgc acaacaatcc gtaacttgca acgttactgc tgtcgaacgg      2220
     ctggaagctg cagttcgcaa gttctgggag gtggagagct ttgagacagg gaaagccctg      2280
     tccctcgagg aacggtattg cgagaatcat tttgtgaaga cccacactag agcccctgac      2340
     ggtcggtacg tggttcgtct gccaattcgt gaggagttgc gatctagttt gggagagtcg      2400
     attgcggtcg ctcaacgcag attctttagt actgagagga agttcacgtc gaacccggag      2460
     ctgaacaagg agtactcaaa gttcatggcg gagtgcgatt agctcgggca tatggaagag      2520
     gtcaccccag atctcagcaa gcctcacttc taccttcctc accacgcgat ccagcgacca      2580
     gagagcacaa caacaaaaac cagagtggtc tttgatgctt cgtgtagatc gtcaaacaac      2640
     atctcgctca acgatctatg ctacattgga cctacggtgc aaccaccact cttggacacc      2700
     attctgcgat ttcgtctgcc aaagtacgtc gtcagcgtca ctgccgacgc ggagaaaatg      2760
     tacaggcagg tactcgtcca tccggacgat cggccgttgc agcagattct atggcgatca      2820
     accccgaacg aggacctgaa gacgtatcag ttgaatactg ttacctacgg taccgccccc      2880
     gcgccgtacc tcgcaacccg cgtcctgaac cagctggccg acgacgaggc agaaaactac      2940
     cccctcgctg ctcctcaagt taagcgatcg ttttacgtcg acgactacct atcgggtgac      3000
     aacgacgaga accgcttgat ggaaactaat cgtcaactca tcggacttct tggatctggc      3060
     ggtttcacca tgcgcaagtg gtgcagcaac agttctcgcg ttctgtctca cattcccgag      3120
     aaactccgag atccccgaac cgagttggag ctcagcgaat ccggatcgat caagacgctc      3180
     tgccttctgt ggcagcctgt ggcggtgcct gaccacctca gctgcaaggt tcccgaatac      3240
     aactcgacgg agccaatcac gaaggcactc attctctcgg aattgtcgca gctgttcgac      3300
     ccaactggta tggcaggacc agtcattgtt cgagcaaaaa tgtttctcca atcgctgtgg      3360
     gaaaagaact tcgggtgaac ccaagagctg ccagaggagt atcaagaatg gtggaagcag      3420
     tacagaatcg aaattcgcgt cctcagcatg ctcaaaatcc ctcgccgagt tctaatcgat      3480
     cactcagtgg tcatcgagct gcactgtttc tcggacgcgt ccgacaaagc gtacggcgct      3540
     tgtgtctacg tgaaatcaac caactcgtac ggcaggtcga aggtcaacct gctcatttcg      3600
     aaatctcgcg tctgtcctag gcgcagatta acgatccccc gtctcgagct gtgcgcagct      3660
     ctgctggggg cccaactgac cgcagctgtc ctggaagcta ccaacctgag ttgtccagtg      3720
     gtctactggt ccgattctgc gatcgtcctg cattggattg cgtcgtgctc atcaacctgg      3780
     aaggtgttcg tctcgaaccg gatcgcagaa atccaacgcc tcacgcaggg catgccctgg      3840
     cgtcacatcc caacccacct gaatccagca gatcttattt ctcggggact tcttccttca      3900
     gagctggttg gatgtgtatt gtgggagcac ggaccagagg tcatcgagct gccctcttcg      3960
     cattggcccc aaaactgcat tgaactctca ccattacaca tgcaggctcg tgacgacgaa      4020
     gcacgccaaa ctgtgtcggt gctcacaaca agctctctcg aagatcgcat ccaaatccaa      4080
     gatcattccg cactcttgcc cctgctccgc tcagtctctt ggattcggag attcacggac      4140
     aactgtcgca gccgtcccga agaacgacga aatggttttc taaagtttcg agaaattgac      4200
     gacacactca agctgctcat tacactgacg cagcgcaccc acttcgctca ggagatcaag      4260
     catcttctca aaaaccctgg cccagtccgt aaagacttcg atttgaaatc ccaaatcaag      4320
     accttgaatc ccttcatcga cccggagggt ctgctcagag tgcacggccg gttggaaaac      4380
     agcagcttac cgttcgacac caagtacccc ataattttgc ccgccaaagc acatctgaca      4440
     catctgatcg ccaaaaacac ccactgggat actctacact cgggtccaca actgctgcta      4500
     tcgacgctac gtcagcgcta ctggccggtc agggggcgag atgttgcgag gagagtcgtc      4560
     aacgagtgtc tggactgctt ccactgcaag ccaagaagca ttgaccagat gatggggcct      4620
     ttgccagcag ctcgtctcgt tccgtcgcgc gcgttcgcga gcagtggtgt cgactactgc      4680
     gggccgttcg ccgtaaggcc accgaatcgt cgcggcgcgt ccgtcaaagt attcgttgcg      4740
     atcgtcgtct gtatgtggtc gaaagcggta cacatcgaca tggtgtacga cctcacgtcc      4800
     gcgtcgttca taaacgtcct aaagcgcctc gttggacgtc gcggccgcgt gaccgacctc      4860
     tactgcgata acgcccgaac gttcgtcggg gctaatcgcc acctggagga actgcgccga      4920
     gcattcgatg cgatgcactc gtcggatgca gtcgccgctc actgcgcaga gaaggggatc      4980
     accttccact tcaaccctgc ccgatcgccg caccacggag ggctgtggga ggccgctgtt      5040
     aaaagcttca aacatcacct ctaccgcgtg atgaaggata cgctgctcac cattgacgat      5100
     ttcaacaccc tgatcgtcca aatcgaaggc gtccttaatt cccgacccct tactcctctt      5160
     tcctccgatc ccactgacgt ggttgccctc actcctgggc acttcctcgt cggagaaccg      5220
     ctgttctcca tccctgagcc cgatctgtgc gacatttcta ttaatcggct caactctttc      5280
     cagaagatgc aacaaaagct ccagcatttc tggagagcat ggtcgcgcga ctacatcggc      5340
     cacctccaaa accgcaagaa atggcccgtg gtccgcccaa acatcgaagt cgacacgatg      5400
     gttctcctaa agcaggacaa cgctcctcca atgcgctgga agctgggccg gatcgaggcg      5460
     gtgttccccg gcaaagatgg gctcgttcgt gtggtggatg tccgcacggc gcacggcacg      5520
     tatcggcgtg caatcacgga ggtctgtccg ctgcccatcg agcaacccag cgaggaacca      5580
     tccgagcagc catccgacct accaaccgac gcagctgtcc aaccatccca ctgagcctgg      5640
     aggcgcttgg tggtttcttg aaagtgcctt tcaacggggc cggca                      5685
//
ID   BEL-8_CQ-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   AAWU01032143;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_CQ_;
KW   BEL-8_CQ-I; BEL-8_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-398
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 170-170 (2011).
XX
DR   Genome; AAWU01032143; Positions    7048    7445.
XX
SQ   Sequence 398 BP; 98 A; 91 C; 83 G; 126 T; 0 other;
     tgttggagaa ctactgccga tgattgaatt tgttacccta gatataagaa ttttggactg        60
     ttctaatgta atcatgaatt gttgcgttct ctcaatcaat ctcttatcgc tctctgcgat       120
     cttttgcatt tccgccgacg atcgtcagca cgatcgatcg ggtagccgat agggagctgc       180
     ggctcattag ttttagttcg tattcgacaa cgttacagag aatacatcga ggaggaacct       240
     ctgccaactt tacttttgct ttttctttaa ataaatggcc caagactaag ccgtagtttt       300
     cttcgaaagt tcgttttttt gattttggca agttccccac accgaaacaa accccacgga       360
     gaagacgtcc tgccgagtag ctgcccagtt tgcgtaca                               398
//
ID   BEL-8_DAn-I repbase;    DNA;    INV; 9108 BP.
XX
AC   AAPP01016013;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DAn_;
KW   BEL-8_DAn-LTR; BEL-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-9108
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016013; Positions   72153   81260.
XX
CC   'GGTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1576..3933
FT                 /product="BEL-8_DAn-I_1p"
FT                 /translation="MVNSQPPSKNTGSKRINSFETNVMQGPKNCDLCAKEN
FT                 HPVRVCPRFLQMPVSERSAYIRRKKLCLNCFAGGHQLKECTSKHNCFTCKG
FT                 RHNTLLHGADLPQLTTIQSNNNPTTSTIQSTTPTNVQSYLAAAIQGVLLST
FT                 AMINVCHLGVTYTARALLDSGSEATFISERLFRILKLPYQSVQARVSLQAR
FT                 VERNQAVAAQSTKMCHFQIGSPIKPRLHIEAEAFVVPLLSGKLPSNSIPKE
FT                 QLKDLPSFTWADPSFFESSQIDLLIGADILPSILLSGSRTKICGTLLGQET
FT                 VFGWILSGPVSKAVPKSISNFSTKVSISSEAKLEKLLTKFWEVEDLPGKPV
FT                 KESDSFCEKNFVQTTRRDDTGRYVVTLPFRSCDRIDLGHSRSIALAQFLKN
FT                 ESRLRKNPTLKEEYEAVIRDYLDQRHMSPIVPDSSGKNFYLPHHAVFKPDS
FT                 TTTKVRVVFNASCPTSNGKSLNDILHPGPVLQSDLTLQVLRWRFFRFVFNA
FT                 DITKMYRQILVAPEHTPFQRILFCDANDQICDYELKTVTFGVNCAPFLAIR
FT                 VLQQLAKDVRTTFPLASEIISTSMYVDDVLAGAHTKQSAGVAIEQLRAALR
FT                 SAGFPLRKWTSNSKCILKDIPKDHLLREGFLELDDQSTAKTLGIRWQANKD
FT                 EFFFAPSDITPKAVLSKREVLSQIARLFDPAGWLAPFVIRAKIFMQEIWLQ
FT                 QLGWDDPLPAELMGKWNEFLMSYPTINQIRIPRWVKFGPKSKVQYHGFCDA
FT                 SQQAYGAAIYVRIEHAQCGYVLGFSKCPSVNDPHI"
FT   CDS           join(3906..8018,8022..9107)
FT                 /product="BEL-8_DAn-I_2p"
FT                 /translation="MPVSERSAYIRRKKLCLNCFAGGHQLKECTSKHNCFT
FT                 CKGRHNTLLHGADLPQLTTIQSNNNPTTSTIQSTTPTNVQSYLAAAIQGVL
FT                 LSTAMINVCHLGVTYTARALLDSGSEATFISERLFRILKLPYQSVQARVSL
FT                 QARVERNQAVAAQSTKMCHFQIGSPIKPRLHIEAEAFVVPLLSGKLPSNSI
FT                 PKEQLKDLPSFTWADPSFFESSQIDLLIGADILPSILLSGSRTKICGTLLG
FT                 QETVFGWILSGPVSKAVPKSISNFSTKVSISSEAKLEKLLTKFWEVEDLPG
FT                 KPVKESDSFCEKNFVQTTRRDDTGRYVVTLPFRSCDRIDLGHSRSIALAQF
FT                 LKNESRLRKNPTLKEEYEAVIRDYLDQRHMSPIVPDSSGKNFYLPHHAVFK
FT                 PDSTTTKVRVVFNASCPTSNGKSLNDILHPGPVLQSDLTLQVLRWRFFRFV
FT                 FNADITKMYRQILVAPEHTPFQRILFCDANDQICDYELKTVTFGVNCAPFL
FT                 AIRVLQQLAKDVRTTFPLASEIISTSMYVDDVLAGAHTKQSAGVAIEQLRA
FT                 ALRSAGFPLRKWTSNSKCILKDIPKDHLLREGFLELDDQSTAKTLGIRWQA
FT                 NKDEFFFVPSDITPKAVLSKREVLSQIARLFDPAGWLAPFVIRAKIFMQEI
FT                 WLQQLGWDDPLPAELMGKWNEFLMSYPTINQIRIPRWVKFGPQSKVQYHGF
FT                 CDASQQAYGAAIYVRIEHAQEVSISLLTAKTRVAPVKTMSIPRLELCGAVL
FT                 LAELFQSVVPQLPPDDFDTFYWTDSTIVLAWLSKPPCTWTCFVANRIAKIT
FT                 QSVDAGKWSHVRSEFNPADLASRGAAPQDLVSSNLWWNGPQWLQLPKEQWP
FT                 TPIESVPETELEQRPIKCNLAKLPPSEDYIDRFSDLSRALRVTVYVLRFLR
FT                 RCKVPSTVLPTEISTAEIREAQKCLHVLTQRQGYPKEYSCLLKKQQIPSSS
FT                 PLKNLNPFLDHRGVLRASGRLVASDTLSYDERHPIIIPYFSPWARLLVRFT
FT                 HRISLHGESQLLMRLIRSKYWIPKLKTLLKATISACKVCLIYRKRLQTQLM
FT                 GELPAERATFSRPFTHTGVDFAGPFEIKNYTGRACLITKGYVCVFVCFSTK
FT                 AIHLEATSDLTSEKFLAAFARLAGRRGCPQKLYSDNGKTFVGASAIITRDF
FT                 LQATREMVIAHYSHQNLSWYFNPPSAPHMGGLWEAGVKSFKAHFYKSASSV
FT                 KYTFEELSTLLIKIDACLNSRPISPMSEDPTDLLALTPGHFLIGGPLLALA
FT                 EPEIKANAVSIINRWQRLKGLHQQFCVRWKEEYLKELHKRNKWQSPTTNLQ
FT                 VDDMVVIKEDNLPTNEWRLGRIQKVCPGADDKVRVVNVLTSRGVIRRPIAK
FT                 LILLPLLKPLRYASSMFVCPCSRLVICFWIPLILLLFPYHTEKMAPRPKAQ
FT                 KPNYPPQGTASYRCRVCRGVHALRKCQQFLKLTAEKRLRAVLINKYCSNCL
FT                 AHEHSGRSCRSAGKCRLCQRDHHTLLHLHNEGGRRRRSLQRSRSSRRRSPS
FT                 RSPHRRPLGRSDSDLGVEPLSSARPSSPAALQEDQRGAYTTTLSTLLQHKA
FT                 TSVLPTAEVVINTGVKKFELKALIDPCCPTSRISASLARSLGLSVTSVGTD
FT                 GVCGHRLQSIRGPLDEEVIFHVDSQLQQRSPAREIDPTAYEAFANLALADE
FT                 RWFRPSTIFLVLGAEVSSHHPFGIHCWSTRIPCRPKFRLWMDFVGPVRPLT
FT                 KGPNLQLRCKGAG"
XX
SQ   Sequence 9108 BP; 2475 A; 2237 C; 2049 G; 2347 T; 0 other;
     ttggtccttc gagccggata tcaccgacac aaaacggcaa gttcactatt caggtggcta        60
     aattattttt ggttgagaca tataacaacc gaaacatatt tacccacatt tattcattcc       120
     tactatcatc ttcaaaaaat atatataaaa atatcatcat cttctatcac ctcatcttct       180
     gcatatatac aaattgttgc cgagggctgc tagaaaagtt ctcctatata ttattcctat       240
     tattcctata tattattcct atatatccta tatattacta ctccatttaa cgcgttaaga       300
     gaaagaaaat aaaaaaaaaa aaaaaaataa taaattaaat tatttggtta aaattcctat       360
     taaattccat taattcctat cgcgtttgca ggggggttcg tatcctctga acttatccaa       420
     ggctcccata ttatatcctc tggacgagag acaaaaccaa aaggttttgc acccgtcaaa       480
     attataagaa ggagtacatc ctcatctcca gttcctcctt cgcatccgtt agcaagatct       540
     gcgaatacca gatccaagag cgagtccctg acgccaacgc taccaaatcc gcagagcatc       600
     tcacgaaccc caataggaac ccgatccgtc actcggaaga cagtttctgc aaccacgatg       660
     gctcttgcga cgttcatttc cgtgtgcgat aaactaagcc atttcgaggc caagatcaat       720
     gaaccatcga cttctgagtc cactcaatac gcccttgagg tccgccgtga ccacgtaaag       780
     aaactttgag agacgattga gagcgagtac gacaaatgtt cccaagttct ccagcaggaa       840
     gcctccagca gtggtgagtg gcaggcaata gaagtatgac tactgctatt ccgtttatga       900
     acactgtgta gcccagctaa cagaggttat cgaaagaatg tccgttccaa ctcttacaag       960
     ggcatcaagt actgcccaac tgtccatgtc tagcggatgc cgacttccgc cctgtgacac      1020
     tgaagttttc aggggggatt acttacggtg gccaacgttc cgcgaccttt tcactgctat      1080
     ctatgtcaac aatccgaggt tgacgccggt ggaaaagtta ttccatttaa atgccaaaac      1140
     agagggagaa gcgaaggcta tagtagcaaa atctccactc acgcatgacg gttttgaatc      1200
     ggcttggacc gcgctttgtg accgttatga aaacaagcgt cttcttgtca acagccaatt      1260
     aaaaatcctg ttcaatcttc ccgtagtggt tgttgagtcc ggtgcagctt taaaggagct      1320
     gcaaagtacc atccaaggct gtctcacggc gttagaacac tccaaaattt caatcgataa      1380
     ttgggattgt cttctcgtat ttctctgctc ctccaagctt ccgaaattga ccctttcttt      1440
     gtgggaacaa tccttgtcca ataagtgcga gatacccgca tggcatgaaa tgaactcgtt      1500
     tctcagcgaa cgatatcgca ccctggaagc catagaggat gttacccagc cagaggaccc      1560
     agctccagca ttaagatggt taactcccaa ccgccttcaa aaaacacagg ctcaaaaagg      1620
     atcaactcct ttgagaccaa cgtgatgcaa ggacccaaaa actgtgacct ttgcgcaaaa      1680
     gagaatcacc cagtgcgggt atgtcctcgg tttctccaaa tgcccgtcag tgaacgatcc      1740
     gcatatataa ggagaaagaa attgtgctta aactgtttcg ctgggggaca ccaacttaaa      1800
     gagtgtacca gtaagcacaa ttgtttcacg tgtaaagggc gccacaatac gctcctgcac      1860
     ggagctgacc ttcctcagtt gactacaatt caatccaata ataatcctac tacttcaact      1920
     atacagtcca ctacgcctac caatgtgcaa agttatctag cggcagccat acaaggtgtg      1980
     ctgttaagta cggcaatgat aaatgtctgt cacttaggag tgacttatac tgcaagggcc      2040
     ttacttgact ccgggtctga ggctactttt atctcggagc gtctctttag gattttgaag      2100
     cttccgtacc aatccgtaca agctagagtt tccttacaag ctagagtaga gagaaatcaa      2160
     gcagtagctg cccaatcaac taagatgtgc cattttcaaa ttgggtcgcc aataaaacct      2220
     agactacaca tcgaggcaga agcatttgtc gtgccacttc tatccggaaa gttgccttca      2280
     aactccatac caaaggagca gttaaaggac cttcccagtt ttacatgggc tgatccttcg      2340
     tttttcgaga gctcacaaat tgatttgctg attggggcgg atattcttcc gtctattctt      2400
     ctgagtggct cgaggacaaa gatttgtggc actctgttag gtcaggaaac agtatttggc      2460
     tggatcctga gtgggccagt ctccaaggcc gtgccaaaat ctatttcgaa cttttccaca      2520
     aaggtctcga taagctctga agctaaactc gagaaacttc tcaccaagtt ttgggaggtg      2580
     gaggatcttc cagggaagcc ggtaaaagag tccgattctt tctgtgagaa gaactttgtg      2640
     caaacaacaa ggagagatga cactgggaga tatgtcgtca ccctaccatt ccgaagttgt      2700
     gatcggattg atctagggca ttcaagatcc atagcactgg ctcaattcct aaagaacgaa      2760
     agccgtttga gaaaaaatcc aactcttaaa gaagaatatg aagcagtaat cagggattac      2820
     ttagaccagc ggcatatgtc tccaatcgtt ccagactcca gtgggaagaa tttctacttg      2880
     cctcatcacg ccgtttttaa gccagatagc actactacca aggttcgtgt agtattcaat      2940
     gcttcctgcc ctacttccaa tggaaagagc ctgaatgata tccttcatcc agggcctgtg      3000
     ttacagtccg atttgacttt gcaggtctta cgctggcggt tctttcgctt cgttttcaat      3060
     gccgacatta cgaaaatgta ccggcaaatt ctcgttgctc cagagcacac tccattccaa      3120
     agaatcctgt tttgtgatgc aaatgaccaa atctgtgact atgaactcaa aacagtcaca      3180
     tttggagtaa attgtgctcc gttccttgca ataagagtat tgcagcagtt ggcgaaagat      3240
     gtgagaacga cttttccatt ggcaagtgaa attatttcta cttctatgta cgtagatgac      3300
     gtactggctg gggcgcacac aaagcaatct gctggtgtag ctattgaaca gctacgtgcg      3360
     gcgctcagga gcgcaggatt tccgttgcgc aagtggacgt ccaactccaa gtgcattctc      3420
     aaggacattc ctaaagatca cttgctaaga gagggtttct tagagctaga tgatcagagc      3480
     actgccaaaa ctctcgggat tcgttggcag gcaaataaag atgaattttt cttcgcccca      3540
     tccgatatta ctccaaaggc agtcctcagt aaacgggagg tactgtcaca aattgcaaga      3600
     ctttttgacc cggcaggatg gctggcacct ttcgtgatcc gagcaaaaat ctttatgcag      3660
     gagatttggc tccaacagct gggttgggac gatccactcc ctgctgagct catgggaaaa      3720
     tggaacgaat ttcttatgag ctatcctact ataaaccaaa tccgaattcc aagatgggtg      3780
     aaatttggtc caaaatccaa agttcaatat cacggcttct gcgatgcatc gcagcaagca      3840
     tatggagccg cgatctatgt ccgaattgaa cacgctcagt gcgggtatgt cctcggtttc      3900
     tccaaatgcc cgtcagtgaa cgatccgcat atataaggag aaagaaattg tgcttaaact      3960
     gtttcgctgg gggacaccaa cttaaagagt gtaccagtaa gcacaattgt ttcacgtgta      4020
     aagggcgcca caatacgctc ctgcacggag ctgaccttcc tcagttgact acaattcaat      4080
     ccaataataa tcctactact tcaactatac agtccactac gcctaccaat gtgcaaagtt      4140
     atctagcggc agccatacaa ggtgtgctgt taagtacggc aatgataaat gtctgtcact      4200
     taggagtgac ttatactgca agggccttac ttgactccgg gtctgaggct acttttatct      4260
     cggagcgtct ctttaggatt ttgaagcttc cgtaccaatc cgtacaagct agagtttcct      4320
     tacaagctag agtagagaga aatcaagcag tagctgccca atcaactaag atgtgccatt      4380
     ttcaaattgg gtcgccaata aaacctagac tacacatcga ggcagaagca tttgtcgtgc      4440
     cacttctatc cggaaagttg ccttcaaact ccataccaaa ggagcagtta aaggaccttc      4500
     ccagttttac atgggctgat ccttcgtttt tcgagagctc acaaattgat ttgctgattg      4560
     gggcggatat tcttccgtct attcttctga gtggctcgag gacaaagatt tgtggcactc      4620
     tgttaggtca ggaaacagta tttggctgga tcctgagtgg gccagtctcc aaggccgtgc      4680
     caaaatctat ttcgaacttt tccacaaagg tctcgataag ctctgaagct aaactcgaga      4740
     aacttctcac caagttttgg gaggtggagg atcttccagg gaagccggta aaagagtccg      4800
     attctttctg tgagaagaac tttgtgcaaa caacaaggag agatgacact gggagatatg      4860
     tcgtcaccct accattccga agttgtgatc ggattgatct agggcattca agatccatag      4920
     cactggctca attcctaaag aacgaaagcc gtttgagaaa aaatccaact cttaaagaag      4980
     aatatgaagc agtaatcagg gattacttag accagcggca tatgtctcca atcgttccag      5040
     actccagtgg gaagaatttc tacttgcctc atcacgccgt ttttaagcca gatagcacta      5100
     ctaccaaggt tcgtgtagta ttcaatgctt cctgccctac ttccaatgga aagagcctga      5160
     atgatatcct tcatccaggg cctgtgttac agtccgattt gactttgcag gtcttacgct      5220
     ggcggttctt tcgcttcgtt ttcaatgccg acattacgaa aatgtaccgg caaattctcg      5280
     ttgctccaga gcacactcca ttccaaagaa tcctgttttg tgatgcaaat gaccaaatct      5340
     gtgactatga actcaaaaca gtcacatttg gagtaaattg tgctccgttc cttgcaataa      5400
     gagtattgca gcagttggcg aaagatgtga gaacgacttt tccattggca agtgaaatta      5460
     tttctacttc tatgtacgta gatgacgtac tggctggggc gcacacaaag caatctgctg      5520
     gtgtagctat tgaacagcta cgtgcggcgc tcaggagcgc aggatttccg ttgcgcaagt      5580
     ggacgtccaa ctccaagtgc attctcaagg acattcctaa agatcacttg ctaagagagg      5640
     gtttcttaga gctagatgat cagagcactg ccaaaactct cgggattcgt tggcaggcaa      5700
     ataaagatga atttttcttc gtcccgtccg atattactcc aaaggcagtc ctcagtaaac      5760
     gggaggtact gtcccaaatt gcaagacttt ttgacccggc aggatggctg gcacctttcg      5820
     tgatccgagc aaaaatcttt atgcaggaga tttggctcca gcagctgggt tgggacgatc      5880
     cactccctgc tgagctcatg ggaaaatgga acgaatttct tatgagctat cctactataa      5940
     accaaatccg aattccaaga tgggtgaaat ttggtccaca atccaaagtt caatatcacg      6000
     gcttctgcga tgcatcgcag caagcatatg gagccgcgat ctatgtccga attgaacacg      6060
     ctcaggaggt ttctatttct cttttgaccg ctaaaactcg cgtggctcca gtaaagacca      6120
     tgtccatacc acgccttgaa ttatgcggtg cagttcttct ggctgagtta ttccaatcgg      6180
     ttgttccaca acttcctcct gatgacttcg acacattcta ctggacggac tccacgatag      6240
     tgctagcatg gttaagcaaa ccgccatgta cctggacatg ttttgtggca aacagaattg      6300
     ccaagattac acagtccgta gatgctggga agtggtctca cgtgcggtct gaattcaatc      6360
     cagctgactt ggctagtaga ggcgcggctc cacaggatct cgtctcaagt aacttgtggt      6420
     ggaatggccc acaatggcta cagcttccta aggagcaatg gcctactcca atagaatccg      6480
     taccagagac agaacttgag cagcgtccta tcaaatgcaa cttggctaag ttgccaccat      6540
     cggaggatta catagatcgt ttttcagacc taagtcgtgc cctccgggtg accgtttatg      6600
     tcctgcggtt cctaaggcgt tgcaaggtac catctacggt cttgccaact gaaatcagta      6660
     ccgccgaaat ccgagaggca cagaagtgtc ttcatgttct gacccaacgg caagggtatc      6720
     caaaagaata cagttgcttg ttaaaaaagc aacagatccc atcatccagc cctctcaaga      6780
     acctgaatcc cttcttagac catagagggg tactgcgagc atcgggcagg cttgttgcgt      6840
     ctgacacgct ttcctacgat gagagacatc cgattataat accatatttc agtccatggg      6900
     cccgtctact ggttcgattt actcaccgca tatccttgca tggtgagagt cagctcctaa      6960
     tgcgactcat tcgatccaag tattggattc caaagcttaa aactttgcta aaagctacta      7020
     ttagtgcatg caaggtgtgc ttgatctacc gaaagcggtt gcagacccaa ctcatggggg      7080
     agctgcccgc ggaacgggcc actttctcac gtccgtttac acacactggc gtagattttg      7140
     ccggtccctt tgaaattaaa aattatacgg gccgtgcgtg ccttatcaca aagggctacg      7200
     tgtgtgtatt tgtctgcttc agcacaaagg caatccacct tgaagctacg tcagacttga      7260
     cgagtgagaa attcctggcg gcttttgcgc gcttggctgg tagaagaggc tgcccacaga      7320
     aattatattc agacaacggt aagacatttg tgggtgcctc agccattatc acgcgggatt      7380
     tcctacaagc aacgagagag atggtcattg cacactacag ccaccaaaac ctatcctggt      7440
     acttcaatcc gccaagtgcg ccacatatgg gaggactgtg ggaagcagga gtgaagagct      7500
     ttaaggcgca tttctacaag tctgcttcct cagtcaaata tacgtttgaa gaactttcga      7560
     cattattaat aaaaatcgat gcgtgtctca attcacggcc catttctcca atgtcagagg      7620
     atcctactga cttattagcc ttgactcccg ggcatttttt gatcggtggc ccactgctag      7680
     ctctggccga accagaaatt aaagctaacg cagtatccat catcaaccgt tggcaacgtt      7740
     taaagggcct tcatcaacaa ttttgtgtcc gatggaagga agaataccta aaggagctcc      7800
     acaaacggaa taagtggcag tcaccaacta cgaatctcca ggtcgatgac atggttgtca      7860
     taaaagaaga caacctgccc acgaacgaat ggcgcctcgg ccgaattcag aaggtttgcc      7920
     caggtgcaga cgacaaggtc cgagtggtga atgttcttac gtcaagaggc gtaatacgtc      7980
     ggccgatcgc gaaattaata cttcttccac tcctaaagta acccctacgc tatgcttcgt      8040
     caatgttcgt ttgtccatgt tcacgtctag tcatatgttt ttggatacca ctaattctac      8100
     ttctctttcc ttatcataca gagaaaatgg caccgcgtcc gaaggcccag aagccaaact      8160
     atccgccgca aggaaccgct tcctatcggt gccgagtgtg cagaggagtt catgcactgc      8220
     ggaagtgcca gcaattcctc aagctgacgg ccgagaaacg cctgcgagca gtacttatca      8280
     ataagtactg cagcaattgc ttagcccatg agcattccgg gcgctcttgc cgcagtgcgg      8340
     gaaagtgtcg actttgccaa agggaccacc acacgcttct gcatctgcac aatgaagggg      8400
     gccgtcgaag acgctcactt caacgttccc gctcctcccg taggcggtca ccatccagat      8460
     cccctcaccg ccgtccgctg gggcggtcgg attcagacct aggggttgag ccgttgagct      8520
     ccgccaggcc tagttctcct gctgcgcttc aggaggatca gcgtggcgcc tataccacca      8580
     cgctgtctac cctcctgcaa cataaggcca cgagtgtctt gcctacggct gaggtggtta      8640
     tcaacaccgg agtcaagaag ttcgaattga aggccttgat cgacccttgc tgtcctacca      8700
     gtcggatcag tgcatccttg gcaaggtcct tgggcctctc cgtcacaagc gtcgggaccg      8760
     atggtgtgtg cggacacagg ctccagtcga tcagggggcc gttggacgag gaagtcatct      8820
     tccacgttga ttcccagcta cagcagagat cgcctgcacg ggaaatcgat ccgacggcat      8880
     acgaagcctt cgcaaacctc gccctggcgg atgaacgctg gtttaggccg agtaccatat      8940
     tcttggtatt aggggccgaa gtatcctcac atcatccgtt cgggattcat tgctggtcaa      9000
     cgaggatccc ctgtcgccca aaattccgcc tttggatgga ttttgtcggg cccgtgcggc      9060
     cattgacaaa aggcccaaat ttgcaactgc gttgcaaggg ggccggga                   9108
//
ID   BEL-8_DAn-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   AAPP01016013;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DAn_;
KW   BEL-8_DAn-LTR; BEL-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-284
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016013; Positions   71869   72152.
XX
SQ   Sequence 284 BP; 91 A; 60 C; 36 G; 97 T; 0 other;
     tgttcatgct gaattcataa ttcacaatat ataatcacat atgtacatat tcatagtata        60
     tactaacata tcatacatat gtatatcgat aaccaccgac tgtgccatca cttgagaatt       120
     ttaccatctc tggaatgagc ttaagttttt ggagttatct cttgccgcta aaattcgttt       180
     ttataataaa gaaaggaaag tgaattaaac ctaacccgag tgtctttgaa atcatcctca       240
     aatccttttt tttacctacc gttcgcctca atcctggcac caca                        284
//
ID   BEL-8_DAzt-I repbase;    DNA;    INV; 6346 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6346
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 773-773 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1136..6313
FT                 /product="BEL-8_DAzt-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MTGKRRGGSGSNTSIVEEDDSGVLLRKLNAVKRDIDR
FT                 TAKAVQNNNISSNQFELECRLSILDGYIDRAFSLQLQIDDIDPDLASRSEL
FT                 EELCVSTKALLMAIKRPNPPTCLNESVLNTTMSHTRNLPKMKLPKFGGNYS
FT                 EFKNFIGMFSSIIDSDTSLSNVEKFNHLLNCLENQALGTVKAFPVTEQNYC
FT                 KALEALKQVYDNECLMFLDGVAKLFELQAMQAPSASALRSLIDTASAIYES
FT                 LLSVGDDKVIAHALLIHLVLSKVDTKTHSRWKENLDYQKVPSWSEFVAALN
FT                 KRYQHLSAEESTSGRLKGRKGSQESTNRHSGKTALAVAQASRGQDTNCVFC
FT                 KSADHGISNCSSFSAASVSTRFRFAKGCPLCINCLRRGHSVSACKSTHCRV
FT                 CSKPHHTLLHRYNVDSATTPTARDALGSNQLSANHAMASYCDQVVLATAIV
FT                 DIKGGSSQRQPARVLLDSGSQVNFITEELARNLQLKRIRKDISLLGIGKSS
FT                 ISAHQVVQTTVCSRVQQFEIATDFVVLKSISSYHPEKAVPSDSLTIPKGFP
FT                 LADPGFHKPQRVDLLLGADAFFDVLKDGQIKQQNALTLQNTVFGWVVSGRC
FT                 RSNGPRSNEACSMVSTLQELCPLQNLVKRFWELENVPNASIERLHTPEETM
FT                 CEKSFVDSITRLPSGRLQVSLPFKSSPTSLGSSFETARRRFLSLERRLCQK
FT                 PAMKSMFMEFMEEYVSLGHMTAVENLIPVEPHCFIPYQCVERPQSTTTKLR
FT                 VVFDASCKTTSQVALNDLLMVGATIQPCLYATLLRFRCRKYALTADITKMY
FT                 RQVQVDEAQRRFQLIIWRRTSSDPLQVFRLNTVTYGTASAPFLAVRCLKYL
FT                 SDTHVNSHPIGAKSLASDFYVDDLLTGADTKSELTILRQQLVEILEPSGFV
FT                 LTKWAANCQLVDSQQENMLISNGDQQDCKTLGLIWNPQTDIFKYSLKPIIS
FT                 SETTTKRAILSVIASLFDPLGLLCPVITNAKIFLQEIWLLSLGWDDPIPSN
FT                 VHKKWESMALDMQKLHDVTVPRFIGASANTRCQIHGFADASTRAYGCCVYV
FT                 RVSHANGVSVKLLTAKSRVAPLKTKTIPRLELCAAHLLAKLWEEVRSIIDC
FT                 PIEKVVLWSDSEVVLHWLQTHPSQLTTFVSNRVAEIQDITSTALWRHVPTK
FT                 ENPADLVSRGSSVADLNSLLWFNGPSFLQQESRHWPQNPHLQLTEANALLE
FT                 KKKVATALIAADVEKNPILTIIQNSSSYMKVVNTIAYIRRFINRRKGHTWS
FT                 STCPSSDELGAAFLTAVEVIQRDAFSQEIDKLKKSSKLQVSLQKLNPFMSE
FT                 EQVGSCSFSLMRVGGRLLNAPLAHNARFPILMPKNCRFVTLYLSYLHRANC
FT                 HAGPRALVGFLRQSIWLINARRECSAIVRKCVHCFHYKPKLLSQIMGNLPA
FT                 DRLRGNQPFEISGVDLFGPVRVSLGIRGKQPLKMYIAVFVCFASKAVHLEI
FT                 VKDLTANTFILCLSRFIGRRGPLVRLYCDNATNFAGAARMLKERMEIWDAK
FT                 DEALKAYAAAHRFSVEFIPPRAPHIGGLWESAVKSAKHLLLRAMGSAVLKE
FT                 DELHTVLVDVEAVLNSRPLVVDSGSPNEGEVLTPAHLLVGRTLVSLPPESE
FT                 LPRPDSSLSYLQRWQLVSAIKQKFWRDWSREYLLSLQQRGKWLQEVANLEP
FT                 GKVVAIHEDNVPPQRWLIGVVEEAIPGADGKVRVAVVRTKAGLYKRSIHRL
FT                 APIPMD"
XX
SQ   Sequence 6346 BP; 1723 A; 1486 C; 1480 G; 1657 T; 0 other;
     ttttggcgcc cccgggtgga cactggcatt cgtactggat agaagttgga ttggatcact        60
     tgacgctttg ttggatatca ccgttggata tcatcactcg ctcgttgttg ttgctgttcc       120
     tgctcgtcat tggaccgctg gaccgtcgca tcgcaaactc ttggtgctaa tctttggtat       180
     tcctggttgg tatggacatg aatcgttgtt caaattaccc tcaacaaatg ccacaggtaa       240
     attaaattgc ccaatataat taccaacaat aaaacggcct gttaataaag tatttaacaa       300
     agtgaaaggc cagtgatatg tatgtacacc tttatatata tattcaattt tcatattgtt       360
     taacttgagt gatcactgta cttgtggtca acgactcctc aaagaggagc cgacaatcaa       420
     agaagaaacg gcaatagttt cgcgcgcaag ctctgaccgc tgcgcatcat ttctcccctt       480
     cgcccctcgt cgtcacagat tttcgtttat gctttgcacg aacggcttat gctagcactt       540
     tcgtttatgc atagttctgt gctctctctt tctctcgctc tcgtaacggc cagtatagcc       600
     gatcacagca acgtattgca tcgcatagca gagcatagcc agcagagccg agcccataag       660
     ttttatgctt gttgcggcta tttcgtttcg ctctctctat ctctcaaaaa taaaacacag       720
     catagcagct atagagctaa gtctccaatt tgagatcggt aaatcttgtt cgtggagcct       780
     ttctcactca gtttagaact gttcccttca cagcgtctgt tctcatattt ggagcgaacg       840
     tagacttgag tgattattcg cattcgctgc tctcactcaa tcagaaagtg ttctcatctt       900
     cggagtgcac attcgcatgc gctgctatca cttaaccaaa aactgttccc atcacagcat       960
     ccgttctcag ctgtggaggc attgagtgac ttttcgtatt cgctcgtctc actcaattca      1020
     gcagcttgtt gcatcagctg ttctaatcgt agaggtcatt agagcctaat aaaggttgag      1080
     tgattcttga gtgcattcta gtgtttaata aaaacaatta taaagtagat tcacaatgac      1140
     tggaaaacgt cgtggtggtt ccggtagcaa tacgtctatc gtcgaagaag acgattcagg      1200
     tgtgcttctg aggaagttaa acgcagtcaa acgggatatt gacagaactg caaaagcagt      1260
     acaaaacaac aatatctcat ccaatcaatt cgagctagaa tgtcgcttaa gcatattaga      1320
     tggctacata gatcgcgcat tctctttgca gttgcaaatc gatgatatcg atccagactt      1380
     agcatcgcgt tccgagctcg aagaattgtg cgtgtcaact aaggcgttgt taatggctat      1440
     taaaagacca aatccgccta cttgtttgaa cgaatcagtt ctaaatacca ccatgtcaca      1500
     cacaaggaac ctgccaaaga tgaagttgcc caagtttggt gggaattatt cggaattcaa      1560
     gaatttcatt ggcatgtttt caagcatcat tgatagtgac acgtcgttaa gcaacgtcga      1620
     aaagttcaac catctcttga attgtttaga gaaccaagca ttaggcacgg ttaaggcttt      1680
     cccggtaaca gagcaaaact attgcaaggc ccttgaagct ctaaagcaag tgtatgacaa      1740
     cgagtgcctc atgttccttg atggcgtagc taagctgttt gagttacagg caatgcaggc      1800
     accgtcggca agtgcattac ggtcacttat tgatacggca tctgccatat acgagtcatt      1860
     gctgtcagtt ggggatgaca aggttattgc tcacgccctg cttatacacc tcgttctgtc      1920
     gaaagtcgac acaaaaaccc attcaagatg gaaagaaaat ttagactacc aaaaggttcc      1980
     gtcgtggtcc gaatttgtag ccgcattaaa caagcgctat cagcatttgt cagctgaaga      2040
     atccacttcc gggcggttaa agggtcgtaa aggttctcaa gagtcaacaa atagacattc      2100
     tgggaaaaca gcgttggctg tagcccaagc aagcagaggc caggacacaa attgtgtgtt      2160
     ctgtaaatca gcggatcatg gcatctcgaa ttgctcgtct ttctcagcag cgtctgtcag      2220
     tactcggttt agatttgcca agggatgtcc cctttgcatc aattgcttgc gaagaggcca      2280
     tagtgtctca gcctgcaagt ctacacactg cagagtatgc tcaaagcccc accacacatt      2340
     gttgcatcgc tacaatgttg actcggcgac aacgccaacc gcccgtgatg cgcttgggtc      2400
     gaatcagttg tcggcaaatc atgccatggc atcttattgt gatcaggtag ttttggccac      2460
     agcaattgtg gacattaaag gtggctctag tcagcgacag ccagcaaggg tactgctgga      2520
     ttctggctca caagtaaatt tcattaccga ggagctcgct cggaatttac aactcaaacg      2580
     aattcgcaaa gacataagcc tattgggaat cggaaagtcg agcatatctg cacaccaagt      2640
     ggtgcaaaca acagtgtgct ctcgagtcca acaattcgaa atagccactg acttcgtggt      2700
     tttaaagtcg atttcgtcgt accatcctga gaaagccgtt ccgtcagact cgctcacaat      2760
     ccctaaaggt ttcccactgg ccgatccagg tttccataaa ccccaaagag tggatctgct      2820
     gctaggagct gacgcatttt ttgatgtatt gaaagatggc caaataaaac aacaaaacgc      2880
     gctgacgttg caaaatacgg tttttgggtg ggtggtgtct ggtcgctgca gatccaacgg      2940
     accccgaagc aacgaagcat gctctatggt gagcacgttg caggagttgt gccccctaca      3000
     aaacctcgtc aaacgtttct gggagttgga aaatgttcca aatgcatcta tagaaagact      3060
     gcataccccc gaagaaacta tgtgtgagaa atcgttcgtt gactccatca cacgattacc      3120
     ctccggtcga ttgcaagttt ctttgccatt taagtcaagc ccgacatctc tcggttcgtc      3180
     attcgagaca gccagaagac gatttttgtc attagaaaga cgattgtgcc aaaaacctgc      3240
     catgaaatcc atgtttatgg aattcatgga ggaatacgtg tcgttaggcc atatgactgc      3300
     agtagaaaac ttaattccgg tagagccgca ttgtttcata ccatatcagt gcgtggaacg      3360
     acctcagagt acaaccacta agctcagagt ggtctttgat gcgtcttgca aaactacgag      3420
     ccaagtggca ctcaatgatt tgctcatggt cggagcaacc atccagccgt gcctatatgc      3480
     cactttgctg agatttcgct gtcgcaaata cgctcttaca gcagacatca caaaaatgta      3540
     ccgtcaagtc caagttgacg aggcgcagcg ccgattccaa ttaattattt ggagacgaac      3600
     aagttctgac ccattgcaag tgttccgact caatacagtg acgtatggta ccgccagcgc      3660
     accatttctg gctgtgcggt gtttaaagta tctgagcgac actcatgtaa attcgcatcc      3720
     aattggcgcg aagtctctag cgtcagattt ttatgtggat gatctcctta caggagcaga      3780
     cacaaaatcc gagctaacca tattgcgcca acagttggtt gaaatcctag agccatcagg      3840
     atttgtgctg actaaatggg ctgctaactg tcaactagtc gatagtcagc aagaaaatat      3900
     gttaatttcg aatggagatc agcaagattg taaaactctt ggtctgatat ggaaccctca      3960
     gacagacatt ttcaaatata gtctgaagcc aattatctcg tccgaaacca caaccaagag      4020
     agcaatatta tctgtcatag ccagtctctt tgatccccta ggcctgctat gtccagtaat      4080
     tacaaatgca aagatattct tgcaggaaat ttggctatta agccttggtt gggacgatcc      4140
     cattccctcg aacgtacata aaaagtggga atcgatggcc ttagatatgc aaaaattgca      4200
     tgacgtcacc gttccacgat ttataggagc cagcgcaaac actcgatgtc aaatacatgg      4260
     gtttgcagat gcgtccacgc gagcatatgg ctgttgtgtg tacgttcggg tttcccatgc      4320
     taatggagtg tccgttaaac tactaacggc aaaatctagg gtggcaccct taaagaccaa      4380
     aacgattcca agattagagc tatgtgcagc tcatctttta gcaaagttgt gggaggaggt      4440
     tcgatccata atagactgtc ccatagagaa ggtcgtcttg tggtcagatt cggaagtagt      4500
     tctacattgg ctacaaactc atccctccca actaacaaca tttgtgtcga atcgagttgc      4560
     tgagatacag gacattacgt cgacagccct atggagacat gtgcccacca aagaaaatcc      4620
     tgcagatctc gtatctcgag gatcatcggt ggccgacttg aattcgctgt tgtggttcaa      4680
     tggcccgtcg ttcttgcaac aagaatccag acattggcct caaaatcccc atttacagtt      4740
     aacggaagca aatgcgttat tggagaaaaa gaaggtagcc actgcgctta tcgcggccga      4800
     tgttgagaaa aatcccattc tcacaataat acagaattcg tcgtcgtaca tgaaagtggt      4860
     taatacaatt gcgtatatcc gccggttcat taatagaaga aagggacaca cttggagtag      4920
     tacctgcccg tcatctgacg agctcggcgc agcgtttcta acagcagttg aagtgattca      4980
     aagagacgca ttttcgcagg aaatcgacaa attaaagaag tcatccaaat tacaggtatc      5040
     actgcagaag ctaaatccct tcatgtcgga agaacaagtg ggctcatgct cattttcgtt      5100
     gatgcgagta ggcggtcgac tactaaatgc acccctagcc cataacgcta gattcccaat      5160
     attaatgcca aaaaattgta gatttgttac tctctacctt agctatctac atcgagccaa      5220
     ttgtcacgct ggaccccgtg cactagtggg attcctaagg caatcaattt ggctaataaa      5280
     tgcacggaga gagtgcagtg ccattgtccg gaaatgcgta cactgtttcc attacaagcc      5340
     gaagcttctc tcgcaaatca tggggaacct tcctgctgat cgattgcgtg ggaatcaacc      5400
     tttcgaaatt agcggagttg atttgttcgg accggttcgt gtatcgcttg gcattcgagg      5460
     caagcagcct ctcaaaatgt acatagcagt gttcgtctgc ttcgcatcta aggctgtaca      5520
     cctagaaatt gtgaaagact tgacagctaa tactttcatt ctatgtttat ccaggtttat      5580
     tggacgtcgt ggccctcttg tccggctata ttgcgacaac gcgaccaatt ttgctggtgc      5640
     agctcgcatg ctcaaggagc gtatggagat ctgggatgcc aaggacgagg ccctcaaggc      5700
     gtatgctgcg gcacaccgtt tttcggtgga atttatcccg ccgcgagccc cgcacattgg      5760
     aggcctgtgg gagtcggcgg tgaagtccgc caagcatttg ttgctcaggg ccatgggcag      5820
     cgcagtgctc aaggaggacg agctgcacac ggtgctcgtg gacgtcgagg ccgtgctgaa      5880
     ctccaggcca ctggtggtcg acagcggcag tcccaacgaa ggggaggtgc tgactcccgc      5940
     gcacttactc gtcggcagaa cgctagtttc gctgccgccc gagtcagagc tgcccagacc      6000
     agacagcagc ctgtcatatc tgcaacgatg gcagctcgtg tctgccatca agcaaaagtt      6060
     ttggagagac tggtccagag aatatcttct cagtcttcaa cagcgaggga agtggttgca      6120
     agaggtcgcc aatctggagc caggcaaagt ggtggcaatc cacgaagaca acgtgccacc      6180
     acaaaggtgg ctgataggag tagtggagga ggcaatccca ggagcggacg ggaaggttcg      6240
     cgtggccgta gtgaggacta aggccggctt atataagcga tctatccatc ggttggcgcc      6300
     cattccaatg gattgaagcc tttgtatagg ctgtcaacgc ggccga                     6346
//
ID   BEL-8_DAzt-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-277
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 754-754 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 277 BP; 83 A; 59 C; 59 G; 76 T; 0 other;
     tgttgaggca attacgttgc ccataattta aatagtatat aaaatgttga agttacatat        60
     agaatacact ctcttatact aacgaagctt atgctggcag cggccgctcg tgaagagggc       120
     gacgctgctc gaataaagca ctcctattgt gaagtcgaaa cagcgcacaa gtgttttctc       180
     tcggtctgtc cggttcccgt gtcccaaaat cttagaacct actgtgctta acggcacgaa       240
     aagtgtaaaa gtgcataatt tggatttgca ccaaaca                                277
//
ID   BEL-8_DBp-I repbase;    DNA;    INV; 5444 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.05, Created)
DT   06-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DBp_;
KW   BEL-8_DBp-LTR; BEL-8_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5444
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 638-638 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4501-5061] - Integrase core
CC   LTRs are 92% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3331..5442
FT                 /product="BEL-8_DBp-I_1p"
FT                 /translation="MKTPHLRESLMDSEVEMHTFVDASENGFAAVSYIRFQ
FT                 NEAGIHCSLLGSKTKVAPLRPTSIPRLELMGAVLGARLAQTLELSLGAKLS
FT                 TRTFWTDSRTVLSWLRSDQRKYKQFVAFRVIEILDGTSVKDWRWVPSSENV
FT                 ADDATKWNKGPDFNRESRWLNGPRFLWQERQFWPLTEAEEGDESGMELKAQ
FT                 FIGVCDGFTDVGRATLIDSERFSIWTRLLWSTARTVWCMRRWKAKALQRSD
FT                 IENQPSQEDTRVAESLLWSYAQAEYYQTEIRLILQGKPLKKNNLLYKLGPY
FT                 MDSDGVLKLDERAKMIKGSDRVVLPCGSHITQLIIKEFHRRFLHANHETVV
FT                 NELRQRFWIPKLRSTLARIRRSCQQCKNRQAAPKPPRMAELPYPRVAAFHR
FT                 PFSYTGVDYFGPLMVRVRRSSEKRYGVLFTCLSTRAIHLEVAYSLTTDSCI
FT                 LAVRSFMARRGCPVELWSDNGTNFQGACTELRRAFEDVDKDLLSREFTGPQ
FT                 MTWKFIPPASPHMGGAWERLVRSVKTALESILLDKRPSDELLRAALMEAEA
FT                 IVNSRPLTYIPLEDENEESLTPNHFLLGSSTGRGPTMEPLPEGVQLKKSWM
FT                 ESQQLADSFWRRWLQEYLPVITRRTKWCEKAKPLVEGDIVYVCDPGQPRSQ
FT                 WPKGRILKVNLSSDGQVRSAAVRTQSGVYTRPATKLAVLSIESSLVDPWRN
FT                 IQVG"
FT   CDS           join(846..1772,1776..3443)
FT                 /product="BEL-8_DBp-I_2p"
FT                 /translation="MRLRHASEGPAKNAVQSLMLHADCVPQIIATLRMRFG
FT                 RPEIIIDLLVTRIKQFPQVRENKLEMLVDFSVEVQNVCATMKASKLDQYLN
FT                 NPALTQELVSKLPSMVQTFWGMHKASLTVCTLAEFSTWLSQMAEGASHVIV
FT                 PSSSSRTERRGTVHTHTVRQGCRLCTRNCRTLQECPAFLEMTTRDRWNATR
FT                 RCGLCWRCFQSHKVERCGVPNPCGIDGRLERHHPLLHRGSTAPVQARCHAH
FT                 RQEGVEMLFRVLPVTLYGNGRQVNTYAFIDDGSSLTLIDAPLLEDLGVKGQ
FT                 PQPLCMQWTAGMHRYEDSVRLDLRISGIGQTKLYDLRDVHSVQSLDLPSQS
FT                 LDITHLKAQHTHLRHLPLSGYDSAQPRLLIGLNNCKLGRVLRTKEGTTEEP
FT                 IAEKTRLGWTIKGRSSNSVGDDITPNYHVFHICACEADENKEILRLLEQCM
FT                 WSDGGPRPEMNSKSVSNDDQLAIQQLEKNTRRINGRFETGLLWRYKDDKLP
FT                 DSLPTALKRARCLYQKLTREPELAKEIRRQLDEYVKKGYARPITSEEAEEK
FT                 PYWYLPIFPVLNVNKPGKLRIVWDAAAKTEGISLNTMLLKGPDQLAQLVPI
FT                 LHRFREKRIAIGGDIAEMFHQVRIHTEDQRYQRFVFIDPYTQRRENYAMQV
FT                 MTFGASCSPSCAQYVKNRNAESFKKEYPRAVKCILENHYVDDMLDSVDTEE
FT                 EAISLARQVHYIHLQGGFLIRNWVSNSREVLSALGEGAPTLVRLDETTDGQ
FT                 TEKVLGMWWDTKEDLIRYRVSPRYRHRELLQGRQRPAKREFLSVLMSIYDP
FT                 LGLISFYVMYAKIIFQEIWRSGCTWDEDATPEGVADGFRSGDAHLRGRKRE
FT                 WICRRELYTISK"
XX
SQ   Sequence 5444 BP; 1476 A; 1300 C; 1551 G; 1112 T; 5 other;
     tttctttaaa ttcttttccg gtntattctt ggagaatact tgaatcagag ngcgaaatca        60
     acatggagat gcctactgga tccggtggag aggcaagatt ggtggcgaca tgcttcctct       120
     gtgaagtgga ggacgagcac gtgacagttg gctgtatcgg cgccggctgc gtgagcatgt       180
     gccatcctaa gtgtgctgct ctagaggatg gcggcgtagg atggatctgt gcagagtgtg       240
     acgtagacgt ccatgcacag aactcgacgt tgatcaggac agaaaagctg accagcctga       300
     cggctgggga caactaccag agttactcag gtggcgacca gangaggatc gaaactaacg       360
     acgtcgacga ggcctcgaag gaagcgcagg acctgcagac ggagctaagg ttgttggagg       420
     aagaagatca gttgctgcag ttgcgacaac aacttctaca taggcgaaag gcgctcatgg       480
     gcaagctccc aagggagagg ctatcggaga ctggccacgc agaaaagatg cctggagcat       540
     ctagtacacg gtaccggaat gctggtacgg atacaattgg tgaagttgcc gttgtggaag       600
     gaaacggcag tacgcagaga gcccacgctg ggcccccatg gttcttttct accantgggg       660
     aggacaactc agctgctagg gtcactaaac ctgtgggcag accatcgtac gaacaattga       720
     cagcgaggaa gactagcgtg gctgagttgg tgaagttttc cggaaggccg gaggactggc       780
     ccttattcat cgaaacgtat gaacagacga cggagctatg cggattcacg gatgccgaga       840
     acctaatgcg acttcggcat gcgtcggaag gaccagccaa gaacgcagta caaagtctaa       900
     tgctgcatgc ggactgtgtt ccgcagataa tcgccacgct aagaatgcga tttgggcgac       960
     ccgaaattat cattgacttg ttagtgacaa ggattaaaca atttcctcaa gtgagggaga      1020
     ataagcttga aatgctggtt gacttctcgg tggaggtgca aaatgtttgc gctacgatga      1080
     aagcctccaa gttggaccag tacttaaaca acccagcgct cacgcaggag ctagtgagca      1140
     agttgccatc gatggtgcag acgttttggg gaatgcacaa agcctctcta acagtgtgta      1200
     cgttggcaga gtttagtacg tggctatcgc agatggcaga aggagcgagc catgtgatag      1260
     tcccaagctc gtcgtcaaga acggagagaa ggggcacggt acatacacac actgtgcgcc      1320
     aaggctgtcg gctgtgcacc cgcaattgca gaaccctgca ggagtgtcca gcattcctgg      1380
     aaatgacgac ccgcgatcgc tggaatgcta ctcgacggtg tggcttgtgc tggagatgtt      1440
     tccagagcca caaggtggaa agatgcggcg tccccaatcc ttgcggaata gatggacgcc      1500
     tagaacgcca tcatcccctg ttgcatcgcg gcagcacggc tcccgtccaa gccaggtgcc      1560
     atgcacaccg acaagaaggt gtggaaatgc tattcagggt attgccagtg actttgtatg      1620
     gaaatggtag gcaagtcaac acgtatgcct tcatcgacga cgggtcatct ctaaccttga      1680
     tcgacgcccc attgctagaa gaccttggag tgaagggaca accgcagcct ctatgtatgc      1740
     agtggactgc cggcatgcac cggtatgagg acanctcggt cagactcgac ttaaggatct      1800
     ccggcattgg ccaaacgaag ctatatgatc ttcgcgacgt tcactcggtc cagtctcttg      1860
     atctcccgtc acagtcgttg gatataaccc acctgaaagc gcagcacaca caccttcgac      1920
     atctaccact gtccggatac gactcagcac agcccaggct cctgataggt ctcaataatt      1980
     gcaaactagg gcgcgtgctt cgcaccaagg aaggcacaac agaagaaccg atcgctgaga      2040
     agacccgcct ggggtggacg attaaaggaa gaagctccaa cagtgtgggt gatgacataa      2100
     ccccaaacta ccacgtgttt cacatatgtg catgtgaagc tgacgagaac aaggagatct      2160
     tgcgcctgct tgagcagtgc atgtggtcgg acggcggccc tagaccggag atgaatagca      2220
     agagcgtatc caatgatgac cagttggcta tacagcagct ggagaagaac acgaggcgta      2280
     taaatggccg atttgaaaca ggtctgcttt ggaggtataa agatgacaag ctgccggata      2340
     gtttaccgac agccctaaag cgggcacgat gcctgtacca gaaactgact cgcgagccgg      2400
     agcttgcgaa ggaaattcgc cgacagctag atgagtacgt gaagaaagga tatgcacggc      2460
     ccattacgtc ggaagaagct gaggaaaagc catattggta tctacctatc tttcccgtgc      2520
     taaacgtgaa caagccagga aagcttcgca tagtctggga tgcggctgcg aagacggaag      2580
     ggatctcgct gaacacaatg ctgctgaagg gacctgacca actagcgcag ttggtaccaa      2640
     tacttcacag gtttagagag aaacgtattg ctatcggcgg cgatatcgcc gagatgtttc      2700
     atcaggtcag gatacacaca gaagatcaga gataccaacg ctttgtattt atagacccat      2760
     acacacaacg gagagagaac tacgccatgc aggtaatgac gtttggggct agttgctccc      2820
     ccagctgtgc ccagtacgtg aagaacagaa atgcagagtc gttcaagaag gaatacccac      2880
     gcgctgttaa gtgcatactg gagaatcact atgtagacga catgctggac agcgtcgaca      2940
     cggaggaaga agctataagc ctcgcgcgtc aggtccacta cattcatctt cagggcggat      3000
     tcctcattcg aaactgggta tcgaattcca gagaagtatt aagcgcactc ggcgaaggag      3060
     cacccacgct agtgagacta gacgaaacaa cggatggaca gaccgagaag gtgctgggaa      3120
     tgtggtggga cacgaaagaa gatctcatcc gctaccgtgt atccccacga tatcgccata      3180
     gagaacttct ccaaggaagg caacgacccg ccaaacgaga gtttctcagt gtgttgatgt      3240
     ctatatatga tcctttaggg ctcatatcct tctacgtgat gtatgcaaaa ataatatttc      3300
     aggaaatatg gcgaagtgga tgtacctggg atgaagacgc cacacctgag ggagtcgctg      3360
     atggattcag aagtggagat gcacaccttc gtggacgcaa gcgagaatgg atttgccgcc      3420
     gtgagttata tacgatttca aaatgaggca ggtatccact gcagtctact gggcagcaaa      3480
     accaaggtag cccctctaag accgacatcc ataccaaggc ttgaactcat gggagcagtg      3540
     cttggagcga ggttagctca aactctggag ctttcacttg gcgcgaagct gagcacacgg      3600
     actttctgga ccgactcgag gaccgtgttg agttggctgc gatcggacca gaggaagtac      3660
     aaacaatttg tagcattccg tgtgatcgag attctagacg gtactagcgt caaggactgg      3720
     cgctgggtac cttcctccga gaacgtggcg gacgacgcca ctaagtggaa caaaggacct      3780
     gatttcaacc gagaaagtcg ttggttgaac gggccgagat ttctttggca agagaggcaa      3840
     ttttggccgc tgacagaggc ggaagaagga gacgagtcag gaatggaatt gaaggcgcaa      3900
     ttcatcggcg tatgtgacgg attcacagac gtaggacgcg cgaccctcat agactccgag      3960
     cggttctcaa tctggacccg tctgctatgg agtaccgcga gaacggtatg gtgtatgagg      4020
     cgatggaagg ccaaggctct tcaacgatcg gacatcgaaa atcagccatc acaagaagat      4080
     accagggtcg cggagagtct tctgtggtcg tacgctcagg cggagtacta ccagacggag      4140
     atacggttaa ttttacaagg aaaaccattg aagaagaata acctactata caagctggga      4200
     ccgtatatgg attccgatgg agtattaaag ctggatgaac gtgccaagat gatcaaggga      4260
     agcgaccgcg tcgtactccc ctgcggcagc cacattacgc agcttatcat aaaggaattt      4320
     caccgaagat ttctgcacgc taaccacgag acggtggtca acgaactacg acaaagattt      4380
     tggataccaa agctgagatc cacccttgct cggatacgac gctcctgcca gcaatgcaag      4440
     aaccgacagg cggcccccaa accgccgcgc atggcggaac ttccctatcc aagagtagca      4500
     gcctttcata gacctttcag ctacacgggt gtggactact ttgggcctct gatggtgcgg      4560
     gtcagacgca gttcagagaa acgatacggc gtgctcttca cctgcctctc tacaagggca      4620
     atacatctag aggtagcgta ttcattaaca actgactctt gtattctagc ggtgcgcagt      4680
     tttatggccc gacgagggtg cccagtggaa ctctggagcg acaacggcac caattttcaa      4740
     ggagcctgca cggagttgcg tagggcgttc gaagatgtgg acaaggatct actctctcgc      4800
     gagttcactg gaccccagat gacatggaag ttcattccac ccgcatctcc ccacatgggt      4860
     ggggcatggg agcgcttggt gcgttccgtg aagacggcgt tggaatcaat cctccttgac      4920
     aaacgaccat cggatgagtt gctgagagcc gctctaatgg aggcggaggc gatcgtcaac      4980
     tcgcgacccc taacatacat cccattggaa gatgagaacg aagaatcact gacaccgaat      5040
     catttcctgc ttggaagctc aactggaaga ggaccgacga tggagcccct acccgaagga      5100
     gtgcagctca agaagagctg gatggaatca caacaactgg cggactcgtt ctggaggcga      5160
     tggcttcaag aatacctgcc agtgatcact aggcggacca agtggtgcga aaaggctaag      5220
     cctcttgtag aaggggatat cgtgtatgtg tgcgatcccg gacagccgcg tagccagtgg      5280
     ccgaaaggaa gaatcctgaa ggtgaacctt agctcggacg gtcaagtgag gagcgccgcg      5340
     gtgaggaccc aatctggcgt ttatacaaga cccgcgacga agctggcagt tctatctatc      5400
     gagagtagtt tggtagatcc ctggcggaat atacaagtgg ggag                       5444
//
ID   BEL-8_DBp-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.05, Created)
DT   06-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DBp_;
KW   BEL-8_DBp-I; BEL-8_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-378
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 639-639 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 378 BP; 115 A; 80 C; 80 G; 103 T; 0 other;
     tgttacgata gatagcaaaa ctgctcccgc ggcatccggc aacgccgaag ttgcagaacc        60
     gatagtttaa gcgggtgttg aatctctgtt aactcagccg gtaaccatgt gcctaagctt       120
     tcttttctat ttgacactcg agggaagcgg acgaaaagtg agaacatatt aatatttaag       180
     atttgattat gaattgtaca accattactt tactaggaat ttaaagtgct gctatcgctg       240
     cttgcagtaa aagagtggtt accgactgta ccgctgttac cccgttataa atgaagaaaa       300
     caataaacaa ttatcagcga ttatctacac gggcgtcttt actcgggcgg cgctaaaaaa       360
     cttcgaattc ccgcaaca                                                     378
//
ID   BEL-8_DEl-I repbase;    DNA;    INV; 7930 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7930
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 437-437 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           704..5395
FT                 /product="BEL-8_DEl-I_1p"
FT                 /note="DUF1759, retrpepsin, reverse transcriptase,
FT                 and peptidase A17."
FT                 /translation="MEVENLIAIQSQIGEEIQILLRNIKKDSSKRKEKASY
FT                 FEDRKRQIEEYWKKFDKGNNIILEMLNDTPMSHEYFEKQYYNQMKTIVYQA
FT                 IEEFNTKILQSMETETSSEVVEQIQKLIRHQAAVLESMSRTMKHIAPENKF
FT                 TYKSVIDNLWKQIESLHFEIHKLCIEPEELGYSMERYISAEEAMLQFCQPS
FT                 TEAVSVATNSSVATISSIQLPKVSIPKFDGSYLKWQQFHDIFNKMVHESAI
FT                 PKIQKMWYLKANLSGEAERLVRHLELTEVNYDTAWTMLKERFNNKRVLSTA
FT                 IFEKLFDHPNVTNDSQSIKNLHDNINESLQALKNIGIRTETWDPVLLFHMT
FT                 RKLDRLTHTLYEQTILDTREIQSIKEFLAFLEQRFLALEAIGGKMHKEKHK
FT                 TSASATASSLACLFCQKGHSIYKCDRFKDISPAERLAWVQRKKLCVNCLKA
FT                 DHMSKQCMSKYTCIKCNKKHNTLLHLGNGNSSTEPKTAAASAATKNSCEKK
FT                 YTLLATARVIVQGVNNQEGDFRALLDSGSQINLISERLVKRLSLQLHPTNL
FT                 RIEGVGGQPRISKGRVSVLIKSKHSDFEARVEAFVLPHIVADQPTEQVKIS
FT                 DLKISNNIPLADPHFARPGKIDLLLGAEHHFSIIRPEQIKSYPGHPILQNT
FT                 EFGWIIAGKINMCSKMPQNCMVVSSAEEAKSSLEKFWKLDNMEPIRKYRTP
FT                 EERHCEKHFLENLQHAQDGRLIVRLPYSEDPSALGKSCDIATRRFLSLERR
FT                 TSPDVKILYNEFMAEYEKLGHMKQVLPNQIPKEHYFIPHHCVLKPESTTTK
FT                 LRVVFDASCKTSTGKSLNDVLYPGPVVQSDLFSILLRFRIHKYVFTADIEK
FT                 MYRQVWMNPKDQFNQMIVWRYNPSDEIKYYRLKTVTYGTTSAPFLATKCLE
FT                 HLANKHLEKWPLGSNALKNDFYVDDCLTGADTIIDAQRIQGELNKILLPCG
FT                 FKLRKWCSNSHQLLKDVSPEDIASNINLGTALEHTSVKTLGIIWSPKDDNL
FT                 CGKAQEHNTQTITKRVVASELGQIFDPLGLFAPVIIRAKIFLQNLSVLKLD
FT                 WDTEISVSLKERWEAFRQDLLCLNKMTIPRHIFDGKIPHKQELHIFVDASE
FT                 KAFGAVVYIRAIYRNRQTTVRLLCAKSKVAPLEKQTLPRLELCAAVLGAEL
FT                 AEKVKKDLNLQSESIKCHYWTDSTIVLCWINAKASNFHTFVANRLSKIQDT
FT                 TCPNQWRHVSSNLNAADVLSRGIPASQLSGHTLWLYGPLFLHGSEEKWPAL
FT                 FKAPKDNTISLERKIKIVTLATCTLGEEIYRIKHGNSFNRLQRIIAYMLRF
FT                 CYRKNRKQTELLEFDELEQARRIIIRCIQQADFTNEFNHLRRHPERPLPNS
FT                 SKVASLHLHLDENSIIRVGTRVENAPISRDAMNPYLLPYNDEIVKMLIHKL
FT                 HEENMHCGQNTLKGIVRQQYHIIKITPMVRNVIMKCVPCTRFRPKLLSQIM
FT                 GKLPEHRVSQNRPFLNTGVDYCGPFWIHHKVRGKRPDKAYIAVFVCFSTKA
FT                 VHLELVGDLTTAAFLGALQRFISRRGKCQTLYCDNATNFVGASNQLKS"
FT   CDS           5756..7897
FT                 /product="BEL-8_DEl-I_2p"
FT                 /note="DUF3610 and DUF3609."
FT                 /translation="MGAVQRLKHTFWTQWSREYLTGLQQHSKWKQAHKNVR
FT                 EGMMVIVKEDNVPMLQWPIGRIVKIYPGQDGYVRVADVKTATGVFKRAIHK
FT                 LAPLFRQEDPGEKRKEINGEDAEEEEDQEPKRRKSPSLPMLSMPLLILLLL
FT                 LPLAAAGPINITRFDLRPGIYYEKIGSTRLATADWTIIAYYDLKPYLEDVK
FT                 TFYMGTIKVGQMCSHIQPVQACAAVYHHFQHVYEEIKTENDLLHMSRTRRS
FT                 PLDIVGNIANSLFGVLDTEYAKKMSSTIQKVKSNEDYILELVKNQTSIIDS
FT                 TINIMKRDEAAIDKRIKIMTQQMEDIANARLDSLKAFQWYIALTNQLSILA
FT                 ASLQRVQTEISHVLTNVHHNEISPLLVSPKQLRQHLDKLKIHMPQGKMLPL
FT                 VNDDVLQLYKLMKAEAKVVKDYVIFKLTLPLVSTQLFEIYNLVPIPVIINN
FT                 KMISLDIEYPIMAVNQHRDQFITMSSSEFELCNILNGEEYICSDKQSMFSI
FT                 DNHCEFQLFNNKSSSLCQTKGSTRSFSWQRLRTKNQWIFSIKSPMELSAVC
FT                 DDQLSTITIDNIGLLSLDPKCTLRNPVLSVIGHQVTSTGTLKLSYARFGSL
FT                 NESLTPLAKVSQANNSLKLSYNELNELSKELIPRIKIKMPNEIVELQHHHI
FT                 SAYIALILSLGLIIFYVWKRFQKKSPQPTSSSSKDIDLPAKPMLINTPRRH
FT                 HQTPVSDAFEINIG"
XX
SQ   Sequence 7930 BP; 2773 A; 1525 C; 1481 G; 2151 T; 0 other;
     ttttggtgac cccgaccgtt gcatgaaatt ctagtcaact tggcgactaa tttctgcaca        60
     tatttttcta gacagattcc cgatcaactt ggcgatcgaa tcatctagat ttaaagttgt       120
     gaaaatcttg cttaataatc ctgttattga gcagaattca taactaaggg taatttgcct       180
     cgaataattt tccgagcata ttcccgaaca acttgaaatt ttttttcaag gagtaaatga       240
     tcaacttggc gatcttttac tacaatattg gaagtcaact tggcgactcc aataacacaa       300
     atatttaaaa gtagaagaag tcaacccggc gactcttcca acttacatca aaaatttaat       360
     ccgatttact gaagtcaact tggcgacttt caggataacc gtcgattaat ttccgaaatt       420
     gaagtagtca acaaggcggc tcttcaactg gaatacaaca atttcaagta gtcaacacgg       480
     cgactcttgc acattttggg aagcgattgt atcctaacaa ttaacaaaca aattaaataa       540
     aaattttgaa taaaaagatt tgaaattatt gaattggctc tttttctaat ccttaaaacc       600
     ttacttgtct ttgaccataa aatcggttgc gagtagaagc gtatccagct tatattaagc       660
     aaataaatta tcttccaacg ggtcaggcat tatataaggc aaaatggagg ttgaaaattt       720
     gattgccatt caaagccaaa ttggcgaaga aatccaaatt ttgctgagaa acatcaaaaa       780
     ggattccagc aaaagaaagg aaaaggcgtc ttatttcgaa gacagaaaac gccaaattga       840
     ggagtattgg aaaaaattcg acaaaggaaa taatattatc ctggaaatgt taaatgatac       900
     tccaatgtcg catgaatatt ttgaaaagca atactacaat caaatgaaaa cgattgtgta       960
     tcaagctatc gaagaattca atactaaaat tcttcaatcg atggaaactg aaacatcgtc      1020
     agaagtggtg gaacaaatac aaaaattaat aagacaccaa gcggcggttc tggaatctat      1080
     gtcaagaact atgaaacata tagctccaga aaacaaattt acctataaat cagtaattga      1140
     taatttatgg aaacaaattg aaagtcttca ttttgaaatt cacaaattgt gcatcgaacc      1200
     tgaagaatta ggttatagta tggagcgata tatctccgct gaagaagcaa tgttacaatt      1260
     ttgtcagcca tcaactgaag cagtttcagt agctaccaat tcatcggtgg ctacaatctc      1320
     ttcaatacag ttgccaaaag tttccattcc aaaatttgat ggaagctatc taaaatggca      1380
     acaatttcat gacattttta ataaaatggt tcatgaatct gctatcccaa agatacaaaa      1440
     aatgtggtat cttaaagcta atctctctgg agaagcagaa aggttagtta ggcatttaga      1500
     attaacagaa gttaattatg acaccgcctg gaccatgctt aaagaacgtt tcaataataa      1560
     gcgagtcctt tctactgcga tatttgaaaa attatttgat caccctaatg tgacaaatga      1620
     ttctcaatca ataaaaaatt tgcatgacaa catcaatgaa tcattgcaag ccttaaaaaa      1680
     tattggaatc agaacagaaa cctgggatcc agtccttctg tttcatatga caagaaaact      1740
     agatcgactc acgcacacac tgtatgagca aacaatttta gataccaggg aaattcaatc      1800
     aataaaagag ttccttgcgt ttctggaaca acgttttctc gcacttgaag ccattggcgg      1860
     caaaatgcat aaggaaaaac acaaaacaag tgcttcagcg acagcgagtt cattggcgtg      1920
     cctgttttgt caaaaaggac atagcattta caaatgcgat agatttaagg atatttctcc      1980
     tgctgaaagg ctggcctggg tccagcgaaa gaaattgtgc gttaattgct taaaggcaga      2040
     ccacatgtcc aaacaatgca tgtctaaata tacatgcata aaatgcaaca aaaaacacaa      2100
     cacattgcta catttaggta acggaaattc cagtaccgaa ccaaaaacag cagccgcgtc      2160
     tgctgctact aaaaacagtt gtgagaaaaa atacacactg ttagcaacgg ctagagtcat      2220
     agtgcaagga gtaaacaatc aagaaggaga ttttcgcgca cttctcgatt ccggatcaca      2280
     aataaattta atatctgaaa gactcgttaa gcggttatcg ttgcaactac atccaacaaa      2340
     ccttcgcatt gagggagttg gaggccagcc gcgaataagt aaaggacgtg ttagtgtact      2400
     aattaaatca aaacatagtg attttgaagc aagagtcgaa gcgtttgttc ttcctcatat      2460
     tgtggcagat cagcccactg aacaagtaaa aataagtgat ttaaaaatct caaacaatat      2520
     tccgcttgct gatcctcatt tcgcaagacc aggaaaaatt gatttactgc ttggcgcgga      2580
     acatcacttc tctatcataa ggccagagca aatcaagtcg tatccaggcc atccgattct      2640
     ccagaacacc gaatttggtt ggatcattgc tggaaaaatc aacatgtgct caaaaatgcc      2700
     acaaaattgc atggtagttt cctcagccga ggaagcaaaa tcgtcgttgg aaaaattctg      2760
     gaaattggac aacatggaac caataaggaa atacaggaca ccagaggaaa gacattgcga      2820
     gaaacatttt ttggaaaatc ttcaacatgc acaagacgga aggttaatag tcagattacc      2880
     ttattctgaa gatccctcag ccctggggaa gtcttgcgat attgcgacaa ggcgtttcct      2940
     ttcgttggaa cgaagaacca gcccagacgt taaaattttg tataacgaat ttatggccga      3000
     atacgaaaaa ctaggtcata tgaaacaagt attgcctaat caaataccaa aggaacatta      3060
     ctttattcct caccactgtg ttcttaagcc ggaaagtact actacaaaat taagagtagt      3120
     ttttgatgct tcctgtaaaa catctacagg aaaatcattg aatgatgtgc tttatccagg      3180
     accagttgtt caaagtgatc tgttttctat tctattgaga ttcagaattc acaaatatgt      3240
     ttttacggct gatatagaaa aaatgtatcg gcaagtttgg atgaatccaa aagaccaatt      3300
     caatcaaatg attgtttggc gctacaatcc gtctgatgaa ataaaatatt accggctgaa      3360
     aactgtgact tatggcacaa cgtcagctcc atttcttgcc acaaaatgct tggagcattt      3420
     ggccaataaa catttggaaa aatggccatt gggatcaaat gcactaaaga acgatttcta      3480
     tgttgatgac tgcctaaccg gagcagacac aattatagat gctcaaagga ttcaaggaga      3540
     gttgaacaaa atcttgctgc cttgtggatt taagcttaga aaatggtgct ctaattcaca      3600
     ccagctacta aaggatgttt cacctgaaga tattgctagc aacataaatc ttggcactgc      3660
     actggaacat actagtgtta agacgttggg aatcatttgg agccctaagg atgacaactt      3720
     gtgtggcaag gctcaagaac ataacactca aacaattaca aaaagagtgg tagcctctga      3780
     gttgggtcaa atttttgacc cacttggtct ttttgctcca gtcataatca gagcaaaaat      3840
     ctttctacaa aatctttcag tccttaaact agattgggac acagagattt cagtttccct      3900
     aaaggaaagg tgggaggcct tcagacagga cttgctttgc ttaaacaaaa tgactattcc      3960
     acgacacatt ttcgatggaa aaatacctca taagcaagaa ctacacatat ttgtggatgc      4020
     ttctgaaaaa gcgtttggtg ctgttgttta tataagagcc atatatagga acagacaaac      4080
     gactgtgcgc ctattatgcg ctaaatcaaa agtagcacct cttgaaaagc aaaccctacc      4140
     gcgactagag ttatgtgcag ctgtgttagg cgcagagctt gctgaaaagg tgaaaaagga      4200
     tctaaactta caatcagaat ccataaaatg tcattactgg acagattcga caatcgtgtt      4260
     atgttggata aatgcgaaag catcgaattt ccatacattc gttgcaaata ggttgtcgaa      4320
     aattcaagat acaacctgcc cgaatcaatg gagacatgtg tcatcaaatc tcaacgccgc      4380
     agatgtatta tctagaggga tacccgcatc tcaattaagc ggtcatacat tgtggttata      4440
     cggaccactg tttcttcatg gatctgaaga gaaatggcca gctctattta aagctccaaa      4500
     ggataacact atttctttgg aacggaaaat taaaattgtt acattggcaa catgtacact      4560
     aggagaagaa atatatcgaa ttaaacatgg aaactcgttt aatcgcttac aacgtataat      4620
     tgcatacatg ttacgatttt gttatcgtaa aaatagaaaa caaaccgagc tactggagtt      4680
     tgacgaattg gaacaagcta ggcggataat tatacggtgt atacaacagg ctgacttcac      4740
     aaatgaattt aatcaccttc gacgtcatcc cgaacgacca ttacccaaca gcagcaaggt      4800
     cgcttctctt catcttcatt tggacgaaaa ctctatcata agagtaggaa caagggtgga      4860
     aaatgcccca atttctcggg atgcaatgaa tccctactta ctaccatata atgacgagat      4920
     cgtcaaaatg ctgatacata aacttcacga agaaaatatg cattgtggac aaaatacttt      4980
     aaagggtatt gtacgacaac agtatcacat tatcaaaatc actcctatgg ttagaaacgt      5040
     tatcatgaaa tgcgtgccat gtaccaggtt tcgtccgaaa ttgctttctc aaataatggg      5100
     aaaactacct gagcatagag tttcacaaaa tcgaccgttt ttaaataccg gagtcgatta      5160
     ttgcggaccc ttctggatac accacaaggt ccgaggcaag cgacctgata aggcatacat      5220
     agcagtattt gtatgtttct cgacaaaggc tgtccatctg gaacttgtgg gagatttaac      5280
     aactgctgca ttccttggag cactacaacg atttataagt cgtagaggaa agtgtcagac      5340
     cctatactgc gacaatgcga caaatttcgt tggcgccagc aaccaattaa aaagttaaaa      5400
     gaaacaatcc actcacagca ggctaagaac tctatagtcc agctgtgcaa tacgaagggt      5460
     gtccatttta aatttattcc accgagatcc cctcactttg gtggattatg ggaagctgca      5520
     gtaaaatcag caaaaacact attattaaaa aatgtgtcaa ctgctaacct cacctttgag      5580
     cagttgagca ctgttatcac aaatgttgag gcagtttaaa ttctcggcct cttactccaa      5640
     gatcagatga tcctaatgac cttacagtcc taacaccagg tcatttactg attggagaag      5700
     cactagtcgc tcagccagac ccagaaccac ttcgaataaa atcgctacct gaacaatggg      5760
     agctgtgcag cgacttaagc acacattctg gacacagtgg tccagagaat atttaacagg      5820
     cctgcaacaa cactcaaaat ggaaacaggc ccataaaaat gtaagagaag gcatgatggt      5880
     tattgtcaag gaagacaatg tgcctatgct gcaatggcct attggacgaa tagttaaaat      5940
     ttatccaggc caagatggat atgtgcgagt tgcagacgta aaaactgcaa caggagtatt      6000
     taaaagagcg attcataagc ttgctccact attccgtcaa gaagatccag gagaaaaacg      6060
     aaaggaaata aatggagaag atgcagaaga agaagaagat caagaaccaa aaaggcggaa      6120
     gagcccatcc ttaccaatgc tatcgatgcc gttattaatc ttactgctgc tattaccatt      6180
     agctgctgca ggtccgatta atataaccag gtttgattta aggccaggaa tttattacga      6240
     aaaaattgga tctactcgac tagcaactgc agactggaca atcatagctt attatgattt      6300
     aaaaccgtac ctcgaagatg taaagacatt ttacatgggg acaattaagg ttggtcaaat      6360
     gtgttcacat atacaaccag tccaagcatg tgctgctgta taccatcatt ttcaacacgt      6420
     ttatgaagaa ataaaaactg aaaatgattt actccacatg tcaagaacgc gtcgttctcc      6480
     cttggatatt gttggaaata ttgccaacag tttatttggc gtattagaca cagaatatgc      6540
     caagaagatg tcatcaacta ttcaaaaggt gaaatcgaat gaagattaca ttttagaatt      6600
     agttaagaat caaacttcga taattgattc tacaataaac attatgaaac gagatgaagc      6660
     tgctatcgat aaaaggataa aaataatgac tcagcaaatg gaggatatag ctaatgctcg      6720
     tctagattct cttaaagcct ttcaatggta tattgcgttg acgaatcaat tatccatatt      6780
     ggcagcaagt cttcagagag ttcagacaga aatttcacat gttctgacaa atgtgcatca      6840
     caatgaaata agtccacttc tcgtttctcc caagcaactt cgacaacatt tggataaact      6900
     aaaaattcac atgcctcaag gaaaaatgct ccctctcgtc aacgacgatg tacttcaact      6960
     ttataagttg atgaaggcag aagcaaaggt ggtaaaggat tatgtaatct ttaaattaac      7020
     actgccgtta gtatcaacac agttatttga aatatataac ttggttccaa taccggtaat      7080
     catcaacaat aaaatgattt cccttgatat tgaatatcca attatggctg tgaatcaaca      7140
     tcgagatcaa ttcattacta tgtcgtcaag tgaatttgaa ctttgtaaca tacttaatgg      7200
     cgaagagtat atttgctcag ataagcaatc catgttctcc attgacaatc attgtgagtt      7260
     tcaattgttt aacaacaaat cctcgtcatt gtgccaaaca aagggttcaa cgagatcatt      7320
     ctcatggcaa agattgagaa caaaaaatca atggatattt tcaattaaat caccgatgga      7380
     gttatcagca gtatgtgatg atcaattatc aaccattaca attgataata ttggactttt      7440
     atccttggat ccgaagtgca ctttaagaaa tcctgttctg agtgttattg gccatcaggt      7500
     aacctctact ggaacattga aattatcgta tgctcgattt ggtagtctaa atgaatcttt      7560
     aacaccgctt gctaaagttt cgcaagcaaa taattcatta aagctaagtt ataatgaatt      7620
     aaatgagctc agcaaggaac tgattccaag aataaaaata aaaatgccaa acgagatcgt      7680
     cgaactacaa catcaccaca taagtgccta tatcgcccta attttatcac ttgggttgat      7740
     aatattttat gtatggaaac gtttccaaaa gaagtcgcct caaccaacct cgtcatcgtc      7800
     aaaggacatc gacctgccag cgaagccaat gttaatcaac accccaagaa gacatcacca      7860
     gacgcccgta tccgacgcct ttgagatcaa tattggatga tgttgaacac ctgttcaacg      7920
     gccgggagta                                                             7930
//
ID   BEL-8_DEl-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-454
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 438-438 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 454 BP; 133 A; 111 C; 70 G; 140 T; 0 other;
     tgttagcaca ccacttcagt cgacgcatac aggcagcgct agctctgcct gctttacctt        60
     caaaacccgg attctatttt tactaactct agcctataaa ttccctgtgt gggagacaaa       120
     tatgttgact ttgtatatct tagaacctaa gcaatgcaat gtatttttaa ctaacaaccc       180
     cattccactt ctgtgcaatg gtggccccct tgactctgaa atcgtgtata taaacccgac       240
     ctcaacccta ataaaatcag tactcaagta atccttgtgt attcaattac tctgcattct       300
     acgagtgagc atcgctgtgt ctttggccct catatgcatg attttctccg agttaaacca       360
     attcaagtgt tggtttagcg tcctactgtc actagattat gttctagggg caaccacata       420
     tataaataat aaaaactcaa taaacctaca aaca                                   454
//
ID   BEL-8_DMo-I repbase;    DNA;    INV; 7246 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 17.07, Created)
DT   17-AUG-2020 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DMo_;
KW   BEL-8_DMo-LTR; BEL-8_DMo-I.
XX
NM   BEL-8_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7246
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1267-1267 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4565-5143] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..5887
FT                 /product="BEL-8_DMo-I_1p"
FT                 /translation="MLSDKAIEVLKKQSNLYDTILKAIAEKDALAVVNKLA
FT                 EEFTANHSTLIKLGIPSNHPYFTQNINDGLMEKIRIYKENLMKVEATDPDI
FT                 DADRPSTSMNWQMHSTHQETVFSPRKASATDVMVELVGKRALVLKRHIEEV
FT                 HANLELSNQEETLDSKETLEFLWNKVQSTLTDLEVKYDIPSHEIDGIDALE
FT                 LKVHTLSKKLXRKLSVFHSMKEDVPEMPKSDLPQFNGSPKXWPTFFDXFSD
FT                 MVHKRKDISDTRKLNYLKSCLKGDAQMVVSHLLSGSAASYNSAWELICKRY
FT                 ENKRKIFANAVNQLVDMELLENDDESRIRRFLDTANENIHIVKEVAQIGND
FT                 ADVLIAQILLRRFSTEVPQLYEQHVKRAREIQSLQNVLEFVDQLYNSIDAV
FT                 QKRAAQTITEAKKTSYKRCRFCKLDSHDITRCSRFKAEPVKKRKEFVTKNA
FT                 LCFKCLGAHCIKDCKRDLACKYCTKPHNNLLHEEANKNETFSSNCLKESNG
FT                 QDTLLATALIRIKNKSGKYEQLRALIDGGSQRTLISEEAAQQLKLRRIKRD
FT                 VEVQGISQNTEILKNSVCLTIKPRMSSKFVTSTQALVMPKLQRALPSKKID
FT                 MDVNKDWMGCELADPHFNEPSRIDVVIGVDLLPLIMLGNVKKVNETLGQKT
FT                 ELGWIVSGNIARSSNNKVISATTTIRLDDLERFWELESNSSDPEENNDCEK
FT                 KFQETTTRDEEGRLVVSIPFKKDHELGNSRKQAMARLMQMEKKFKKHPQLF
FT                 TEYKDFMEQYLKLGHMEPVDTIGKGKYYMPHQAVIRPNSLTTKLRVVFGAS
FT                 AKTTNGLSLNDVMLVGPKIQKDIFDILIKWRQWKYVMTADIEKMYRQIKVA
FT                 KADQEYQYILWRDDPKMPIKEYKLTTVTYGTSAAPFLAVRCLQELANQHCQ
FT                 GNNQLMRTIKEDFYMDDLITGGDSIEDCINTQTALLSIMEKAGMHLRKWVS
FT                 NDDRIIAGIDDGDSTEKIIINKDESVKTLGLQWDPKKDVFTFVVDCPKLER
FT                 TTKRLILSQLARIFDPLGWLTPVTLQGKCFIQELWKLPLTWDEQLEPSLVN
FT                 YWQEYARALPELARINIPRWSEKSSTDSTELHGFCDASEKAYAAVVYTKVG
FT                 DKITLLAAKSKVNPIKNKKTIPKLELCAAHILCKLLTKIQAIVGNNIKTIA
FT                 WSDSQITLAWINNKRSKDRFVKTRVDDINKELPHVEWKYVKSADNPADVAS
FT                 RGIAPEHLAACDIWWKGPEWLTKQPHQWPQFEEPETVIVATITTKENYLSP
FT                 LLTRFSSINKLTSVMAYILRFIAKSRGKKHQPTHLTVEELKQAKTLVVKLQ
FT                 QQLDFGHEINLLKAGKPLEAKSKLQALNPFLDANGVLRVGGRLQSALVPYN
FT                 VKHPIIVGKSHLSWLIINNAHKETLHGGLKLMRNLIQREFWIVGLRNTLKK
FT                 YLRECVTCIRYKQEMASQLMGNLPVYRVTGDYPFQNTGIDYAGPFQIRCSK
FT                 GRGQKSYKGYICLFVCMATKALHLEAVSDLSSDKFLEALHRFFARRGKSEN
FT                 LYSDNGTNFVGAARILDKELVAAIKGNSSIAPVLEREGIKWHFIPPASPHM
FT                 GGIWEAGIKSVKHHLKRVIGDNSFTFEEFSTLLCQIEAVLNSRPLVALNND
FT                 TEGDDILTPGHFIVGRPLIGAPEHFDEHRKIGSLDRWRHMQRIRAEFWRKW
FT                 KEEYLASLQQRTKWRQANANLTEGQLVLLKQENTHPARWPMGKITKTTKGQ
FT                 DDKVRVVTIKTNMGEVKRSVNKICLLPTNEKDKQDDSTKDRRKTRSAKLPA
FT                 GKATILSLLTVLRVASATIIPATNITTKLKVQDMDPQTAMLMDKLGKVEVV
FT                 SSSWQMLFYYDMQAYFEVLKQADELMSKTNIICEKLGDFNEYCTTVSSTIM
FT                 LKIKNIRENK"
FT   CDS           5931..7244
FT                 /product="BEL-8_DMo-I_2p"
FT                 /translation="MFFDIGTANRLEENMQTIIKNEKRLSDYVSNQTSIIN
FT                 ATSNLVQTTTEEVNKNFEKVTMEINKMANTMKDNFFVYKESIKFFMLINQV
FT                 RSWIEETEDLQSAVISLVTDINQGKVHPSLVEPNKMLAELNKIQQKLQRNQ
FT                 LLPGENSPKRLQLVYKLMKAQAIFKDNMLIIDARLPIYINQHATLFEAIPI
FT                 PLVLKGRKVIPKTKTKFLIFNTEINAYHSMTEMEVSHCQHEDEITYLCEGS
FT                 WAWEEADDESCEISPIKPSTKQPCKMTEYEGDTFVKKLNGKNRWLFKVFKE
FT                 KSAHIICGNYEEIVQLPNQGIIELYAGCSARIGKINIITPQDLVSTNTARY
FT                 SPLFLKIIDQNVTWDSTPLQHIVVNNSVELQRVQQSIEDLHRQKVHIEDLV
FT                 FHTMNGHISLGLVIIIISLFIVYLIKKRNQRQQLLAITFSGPPQ"
XX
SQ   Sequence 7246 BP; 2657 A; 1521 C; 1514 G; 1550 T; 4 other;
     tggtccttcg atccgtacca caagactact aaatatcgaa agttgtaaca agtgtatatt        60
     aaagtgaaaa cttattttgt taaataagaa aagtgatttc ttctttggct taccaatcca       120
     cgctgtgagt cgaggcacag caagatcaac aaggcgatca aaacaaaaat acctccaacg       180
     ggttaagcca aaaagcaaat caacaaaata tacaaaaaac tacaacaacc gcaacaagat       240
     gctgtcagac aaggccattg aagtgctaaa gaagcaatca aacttgtatg acaccatttt       300
     aaaggccata gctgaaaagg atgcgttggc agtcgtgaac aagttggcag aagaattcac       360
     tgccaatcac tcgacgctaa taaaactcgg tatcccaagc aatcatccgt attttaccca       420
     gaatataaac gatggattga tggaaaaaat caggatctac aaagagaacc tgatgaaggt       480
     cgaagctacc gaccccgata tcgacgccga tagaccatcc accagcatga attggcaaat       540
     gcactcgact catcaagaaa cagtgttttc acccaggaag gcgagcgcaa cggatgtgat       600
     ggtagaactt gtgggtaaaa gagctctagt gttaaagcgg cacattgaag aggtgcatgc       660
     caatctagag ctcagcaacc aggaggaaac tctagatagc aaagaaacac tagagttcct       720
     ctggaataaa gtccagtcta cgcttaccga tttggaggta aaatatgata taccttccca       780
     tgaaatcgac ggcatagacg cattggagct taaagtccat acattgtcga agaaacttna       840
     caggaagtta agtgtctttc acagtatgaa agaagacgtt ccagagatgc caaaatcgga       900
     tcttccccaa tttaatggaa gtcccaaaga ntggccaacg ttcttcgacn tgttctccga       960
     catggttcac aaaaggaagg atatcagcga cacaaggaag ctgaactacc tgaagtcatg      1020
     cctcaaagga gatgcccaaa tggtagtgag ccatttgtta agtggatcag ctgctagcta      1080
     caattcggcg tgggaactta tatgtaagcg ctatgaaaat aagcgcaaga tattcgcaaa      1140
     cgccgttaac cagctagtgg acatggaact gctggaaaac gatgatgaaa gcaggatccg      1200
     ccgattcttg gatacagcaa atgagaatat tcacatcgtt aaagaagtag cccaaattgg      1260
     taacgatgct gatgtactaa tcgctcaaat tttgctaaga aggttctcaa ctgaagtccc      1320
     acaactttac gagcaacatg taaagagggc tagagaaatt caatccttac aaaatgtact      1380
     ggagtttgtt gatcaactat acaattcaat agacgcagta caaaaaaggg ccgcccagac      1440
     gattactgaa gcaaagaaaa cgagctacaa aagatgccgt ttttgcaaac tggatagcca      1500
     cgacataaca agatgctcaa gatttaaagc agagccagtt aaaaaacgca aggagtttgt      1560
     aaccaaaaat gctctatgct ttaaatgcct aggagctcat tgtataaaag attgcaaaag      1620
     ggatttggca tgcaagtatt gcaccaaacc acacaacaat ttgcttcacg aggaagcgaa      1680
     taaaaacgag accttcagca gcaactgtct taaagaaagc aacggacaag atacgttgct      1740
     ggcaactgcg ctcatacgga tcaaaaataa gtccggaaaa tacgagcagc taagggccct      1800
     catcgatgga ggctcccaaa gaacgttgat atcggaagaa gccgcacaac agctaaaact      1860
     gcgccgaatc aagagggacg tggaagtaca aggaatttcg caaaatactg aaattctgaa      1920
     aaacagcgtc tgcttgacaa tcaagcctag aatgtcaagc aaattcgtaa cttcaacgca      1980
     ggcacttgtt atgccaaaac tacagagagc tctaccgagc aagaaaattg acatggatgt      2040
     caataaagac tggatgggct gcgagctagc ggacccacac ttcaacgagc ccagcagaat      2100
     cgatgttgtc atcggtgttg atttgcttcc cttaataatg ttgggaaacg ttaaaaaagt      2160
     caacgaaaca ctgggacaga aaactgaact tggatggatt gtttctggca acatagctag      2220
     atcatcaaac aacaaggtga tcagcgcaac aacgaccata cgcctggatg acctcgaacg      2280
     cttctgggag cttgaaagta actcaagcga tccggaagaa aacaatgatt gcgagaaaaa      2340
     attccaggaa acaacaacaa gagatgagga aggccggcta gtggtgtcca taccattcaa      2400
     aaaagaccac gagttaggaa actcgcgcaa gcaagctatg gccagactaa tgcaaatgga      2460
     gaaaaaattc aaaaagcatc cacaattatt cacagaatat aaggacttca tggagcaata      2520
     cctgaagctn ggtcatatgg aacctgtaga cacaattggc aaaggcaaat actatatgcc      2580
     acatcaagct gtaatcagac caaacagcct tactactaag ttaagagtag tgttcggcgc      2640
     ttcagcaaaa accactaatg gattaagtct aaatgatgtg atgctagtcg ggcccaaaat      2700
     acaaaaggat atcttcgata ttttaatcaa atggcgacaa tggaagtatg tgatgacagc      2760
     cgacatcgag aaaatgtacc gccagattaa ggtcgccaaa gctgatcagg aatatcaata      2820
     catcctctgg agagatgacc caaaaatgcc aataaaagag tacaagttaa ctacagtgac      2880
     atacgggaca tcggccgcac cattcttagc tgttcgctgt cttcaggaat tagcaaacca      2940
     acactgccaa ggaaacaatc agctaatgag aacaataaaa gaagacttct acatggacga      3000
     cctcattact ggtggcgact cgatagagga ctgcatcaac actcaaacag cactcttgag      3060
     tatcatggaa aaggcaggca tgcatctaag aaaatgggtg tcaaatgatg acagaatcat      3120
     tgctggaatc gatgatggtg actcaactga aaaaattatt ataaacaaag acgagtcagt      3180
     caaaaccctt gggctacaat gggaccccaa aaaagatgtc ttcacatttg ttgtcgactg      3240
     cccaaaatta gagcgcacta ccaaacgcct aattttgtct caattggcaa gaatcttcga      3300
     tccactggga tggcttacac cagtcacgct acaaggaaaa tgcttcattc aagagctgtg      3360
     gaaactaccg ttaacttggg acgaacaact ggagcctagt ctcgtcaatt attggcaaga      3420
     atatgcaagg gcattgccag agctagccag gatcaatata ccacgctggt ctgaaaaatc      3480
     gagcacagat tcaacggagc tacatggatt ttgtgacgca tcagaaaaag catatgcagc      3540
     ggtggtgtat acaaaggtcg gagacaaaat cactttgcta gctgcgaaaa gcaaagtgaa      3600
     cccaataaaa aacaagaaga caattcccaa actagagcta tgtgcagctc atatactatg      3660
     caaactatta acaaaaattc aagcaatagt aggaaataat atcaaaacga tagcatggag      3720
     tgattcacaa attacgctag cttggataaa caacaagcgt agcaaagaca gattcgtcaa      3780
     aaccagagta gacgatataa acaaggaact gcctcacgtc gaatggaaat acgtgaaatc      3840
     ggcagacaac ccagcagatg ttgcctcaag aggaatcgcc ccggaacact tagcagcatg      3900
     cgacatatgg tggaaagggc ctgagtggct gacaaaacaa ccacatcagt ggccacaatt      3960
     tgaagagcca gaaactgtta tagtagcaac tataacaaca aaggaaaact acctgagtcc      4020
     actattaaca aggttctcgt caataaataa gttaacaagt gtgatggcct acatattacg      4080
     ctttattgct aaatcaaggg gaaagaagca tcagccgacg cacctaaccg tcgaagaact      4140
     aaagcaagcc aaaacactcg tcgtaaaatt gcaacaacaa cttgattttg gacatgaaat      4200
     aaacttactc aaagcaggaa aacctctgga agctaagagt aaattacaag cgctcaaccc      4260
     gtttctggat gctaatggag tcttacgtgt gggaggccgt ctccaaagtg cgttggtacc      4320
     atataatgtg aaacacccaa ttatagttgg aaaatcacat ctttcttggc taatcataaa      4380
     caacgcacat aaggaaacct tacatggcgg actgaagcta atgagaaacc ttattcaaag      4440
     agaattctgg attgtcggct tacggaacac gcttaagaaa tacttacgcg aatgcgttac      4500
     ctgcatcagg tacaaacagg aaatggccag tcagttaatg ggaaacttac cagtttatcg      4560
     agtaacaggc gattacccgt tccaaaacac tggtattgat tacgctggac ctttccaaat      4620
     tagatgttcc aaaggaagag gccaaaagtc atacaaaggg tacatatgcc tatttgtatg      4680
     catggccaca aaggctctac atctggaagc ggtcagtgac ttatcatcag ataagttctt      4740
     agaagctcta catcgatttt ttgcaagacg aggcaaaagc gagaacttgt attcggacaa      4800
     cggcactaat ttcgtaggtg ccgctagaat attggacaag gaactggtcg cagctataaa      4860
     aggaaatagc agtatcgcac cagtgctgga acgagaaggc atcaaatggc acttcatccc      4920
     gccggcaagc ccccacatgg gaggaatatg ggaagccgga ataaaatcag taaaacacca      4980
     ccttaagcga gtcatcggcg ataacagctt cacgtttgag gagttttcga cactgctatg      5040
     ccaaattgaa gcagtactaa actcacgacc cctggttgcc ttaaataatg acacagaggg      5100
     agacgacata ttgacacccg gtcattttat tgttggacga ccactgattg gagctccaga      5160
     acactttgac gagcatagaa aaattggatc tctagataga tggagacaca tgcaacgaat      5220
     cagagcagaa ttctggagga aatggaaaga ggaatacctg gcgtcgttgc aacagcgaac      5280
     caaatggcga caagcaaatg caaacctcac agaaggccaa cttgttctat taaaacaaga      5340
     aaacacgcat cccgctagat ggcccatggg aaaaattaca aaaactacta aaggacaaga      5400
     tgataaagtt cgagtagtca caataaaaac aaacatgggt gaagtcaaaa gatcagtaaa      5460
     caagatctgt ttattaccca ctaatgaaaa ggataaacaa gacgactcta caaaagaccg      5520
     aagaaaaaca cgatcagcaa agttacctgc cggaaaagcg acgatcctaa gtctgctaac      5580
     ggtattgcga gtagcaagtg ctacaatcat acctgctaca aacataacca ccaaactcaa      5640
     agttcaagat atggatccac aaacggcaat gctaatggat aaacttggaa aagtggaagt      5700
     cgtctcttca agctggcaga tgctgttcta ctacgacatg caagcttatt tcgaagtgct      5760
     aaaacaagca gatgagctca tgagcaaaac aaacatcatt tgcgaaaaat tgggcgattt      5820
     caacgaatac tgcacaacag tgagcagtac aataatgtta aaaattaaaa acattagaga      5880
     aaacaaataa aattatcacc caaacggcca acagatcgaa acggttcata atgtttttcg      5940
     atattggcac tgcaaacaga ctggaagaaa acatgcagac aataatcaaa aacgaaaagc      6000
     ggctaagtga ttatgtcagc aaccaaacat ccatcataaa tgcaacatca aaccttgtac      6060
     aaaccactac agaggaggta aataaaaact tcgaaaaggt tacaatggag ataaataaaa      6120
     tggcaaacac tatgaaggat aactttttcg tctacaaaga gtccataaag ttctttatgt      6180
     tgatcaacca agtgagaagc tggattgagg aaaccgagga tctccagtca gcagtaattt      6240
     ccctggtgac ggatattaac caaggaaaag tgcacccgtc cctagtcgaa ccaaataaga      6300
     tgttagctga actcaacaag atccaacaga aactgcagag gaaccaactt cttcctggcg      6360
     aaaactctcc gaaaagactt cagttagtat acaaactaat gaaagcgcaa gcaatattta      6420
     aggacaacat gctaatcata gacgcaaggc taccaatata cataaaccag catgctactc      6480
     tcttcgaagc aataccaata ccactcgtat tgaaaggaag aaaagttatc ccgaaaacta      6540
     aaactaaatt ccttatcttc aatactgaga taaacgcata ccactcaatg actgaaatgg      6600
     aagtaagtca ttgccagcat gaagacgaga tcacatacct gtgcgaagga agttgggcgt      6660
     gggaagaggc agacgacgaa agttgtgaaa tatctccaat aaaaccgagc accaagcagc      6720
     catgcaagat gacggaatac gagggagaca cgttcgtcaa gaaactcaat ggaaaaaacc      6780
     gatggctctt taaagtattt aaggagaagt ctgcccacat tatatgcgga aactacgagg      6840
     agatagtcca gctaccaaac caaggcataa tcgagctata tgctggatgc tcagccagaa      6900
     taggtaaaat taacattatt actccgcagg atctagtatc tacaaatact gcaaggtact      6960
     cgccactctt cctcaaaata atcgaccaga acgtcacatg ggattcaaca ccacttcaac      7020
     acattgtcgt aaataactca gtagagctac aacgagttca acaaagcata gaagacctgc      7080
     accggcaaaa ggtacatatt gaagatcttg tcttccacac aatgaatgga catatttcgt      7140
     tgggactagt aataattata atatcgctat ttatcgtgta tctaatcaag aagagaaacc      7200
     agagacagca attgttagct ataaccttct ctggcccccc gcagaa                     7246
//
ID   BEL-8_DMo-LTR repbase;    DNA;    INV; 461 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DMo_;
KW   BEL-8_DMo-I; BEL-8_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-461
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1268-1268 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 461 BP; 179 A; 89 C; 89 G; 103 T; 1 other;
     tgttcatgaa catgcatgaa catagaaata tgataagtag gggaacgtac gcgctatgca        60
     ctcgacagct agcataaaat aaataacata tgtctcaagt gtgaactgtc aaactgggca       120
     tacattatga ccctgaccct tagcgattag aatacgtaag aggcgagcgc tgagcattac       180
     aaactcagcg atagcataag aatagctaat aagccaacgc ggagccttat aaactcagcg       240
     ataaaataat aatagctaat agaaccaacg cggagtctta caaactacgc gataagttaa       300
     taatatgtaa tagaccaatg ctgagcctta cacactcagc aatagaagca ctagatttaa       360
     tggttgaaat tatacatgag tctgggtata aaaacccggg cccagcagaa taaagaatca       420
     atacgaaact aaacaccatc anagtaaagt gtattcgttc a                           461
//
ID   BEL-8_DPe-I repbase;    DNA;    INV; 6104 BP.
XX
AC   AAIZ01005496;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DPe_;
KW   BEL-8_DPe-LTR; BEL-8_DPe-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6104
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAIZ01005496; Positions   20295   14192.
XX
CC   Positions [5150-5725] - Integrase core
CC   'ATGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           929..6073
FT                 /product="BEL-8_DPe-I_1p"
FT                 /translation="MAEKSKPTLEDLKIKLKSRVKSIRRLEDRLDQGSIPL
FT                 QLSELQCRSDCLNASIEKANHLQEQIEDITGDDAYAAELEELIIVTKGKIM
FT                 SLIAAFDAASETKPVSSSAPTHARLPKFALPKFSGKHSEFKNFISLFERLV
FT                 HSDNSIPVIEKFNHLISCLSDEALGTIKAFQVTEANYEKAMAGLKRVYDND
FT                 YLIFTNNISTLFNLPRMSHQSASSLRTLIDTVSSIYGSLLSIGDDTTISNA
FT                 MLIHLVLNRVDPVTKQKWDEQLTYEKLPLWSDFEKVLNRRYQHLSAEESTK
FT                 PRQDKVMPSKQHNRSSFACSSTSTNSRTQQTCSYCNSGDHVVSNCPSFSRL
FT                 SVMQRFEFAKSASLCINCLRKGHAVVKCKANKCRVCSRSHHTLLHRYTVSA
FT                 NSLALPPPQESPSPPSNQNQPSTSHVLHATALDRVILATSIVSVRTKSGEH
FT                 ILARALLDSGSQTNFITEDLANRLQIRREESCINLLGIGESNSQVKDKIHT
FT                 VVKSRINGSEFSFDFWILKSISGYHPDQSVNVTDWRIPENLPLADPYFYKP
FT                 QRIDMLIGAESFFELLAVGQIKQGPDFPTLQKTLLGWVVSGKYVSRSSAPQ
FT                 ITNSLSCSEELLVSIDRTLKKFWSLEEMPSTKKIATPEHKLCEEHYRKTTQ
FT                 VLSSGRFEVRLPFKSDPNCLGNSFEVAKRRFLSLERRLHRDPELKKMYLEF
FT                 MEEYLSLGHMSPTDNTIPSTPHYVIPHQCVLRPQSTSTKLRVVFDASSKTS
FT                 SQVALNDILMVGPTIQEELYSTLLRFRLHRFALTADVKKMYRQVMVNEADR
FT                 QFQLIVWRRDPSESLRLYKLNTVTYGTGPAPFLAIRCLKRLSESAKLSFPR
FT                 AANVIGSDFYVDDLLTGAACVEELRAIKSEVSQVLQTAGFELTKWFSNSPE
FT                 ITASESTAKPITISDSESTKALGISWLPTDDAFKFKIDNSVMGLRATKRNI
FT                 LSVTSKLFDPLGLLSPIVIKGKILLQELWLNKLDWDESIPLHLETAWNKLK
FT                 NTLSQLEDISISRFVYSDPMSPVQIHAFADASMRAYGACVYIRSRTAEGLK
FT                 VSLLTSKSKVAPLKTKTLPRLELCAAHLLADLCHRIKPLLNVPIERVVYWS
FT                 DSEVTLHWIRSHPSSLSTFVSNRVAEIQEWSDDATWRHVPTKQNPADIVSR
FT                 GCDVDEIVQSIWFEGPSFLKEEEENWPKNAHFEHSDDLQLEKRKTAVGLTA
FT                 AVRSSELLDVIEGFSSHLKLFRVFVYVFRFIRKCKDPSLKFEKTISPTEYN
FT                 EAFYKIVEIVQHHEYQGEIEKVRKGSTIGPSLQRLNPFIHEDTGTWCNFSL
FT                 LRVGGRLAKAPISYDAKFPLLLTKRSQFVRSYIRHLHHSNFHVGPRALVSI
FT                 LRQSVWIVNAQEVCRQTVRSCMRCFKCKPRLLTQLMGNLPADRLRALRPFS
FT                 ICGVDFCGPVHTTLKIRGRPPYKSYIALFVCFASKAVHLEIVSDLTTDCFL
FT                 LAFQRFVGRRGYPQVVHCDNGTNFVGASRHLSALRIRLKEQGDAIRDFASK
FT                 NGCEFAFIPPRAPHMGGLWEAGVKTAKSLLLRAVGSALLTAEELATVLVGI
FT                 EAIMNSRPLGAISQDPSDGEALTPGHLLTGGSLIAPPALRTPDQESLSCLR
FT                 RWRLVSSVRQAFWQRWSREYVLGLQIRGKWHQQQPNLEEGDLVIVAEDNLP
FT                 PQEWLVGRVIATHAGEDGMVRVVEIRTSTGAVFRRPIHKLAPLPMC"
XX
SQ   Sequence 6104 BP; 1682 A; 1416 C; 1402 G; 1604 T; 0 other;
     tggcgccccc gggtggactg taaagtgaat tataggcaac aaaaaacaag tgacagtgac        60
     acaagaaatt gcagtataca tatgcaaaca tattcgttgc ccgcgtcgtg tgtgtgtgca       120
     atcggcaatc aatttttgta aaatatcatc gcgtcggtcg cgccaacaat aatttttgtg       180
     caattctgct accgccgagg gatgccctgc gaaaaagaca ggaaagtagc agttggattc       240
     aaaaatccaa aagaggaatc agaggtattt gtgcagaaaa ttgaaggctg agctaaagac       300
     attcagatct ttctttgagg tgtcttgtgc tgaatacatt gcacatcgcc ttcaattcta       360
     ggcacagacg tatgatacat atatagtaga gcttgattgc atgcatttta ttagtaattg       420
     cataaatata actaaaaaca cataaataca tacatatcga cacatacaga catatgtgaa       480
     ccgctatttg gacgcaacag ttatatgtat gtacatacat ctatctttta ctgcaatcac       540
     tgtcgccctc cccccccttt tattttgttc tacctttctc gtcgttagaa cctcacaaag       600
     tttgttcgtt cgttcaccca agccacggcg tatagaaaat ttccacacat acatacaagc       660
     agcagcaccg gtgcattatt tcgttttcgc tttcgcttct ccactgctgc ttgcgttgta       720
     tttgttggga gaattttcgt tgccgctctt gagcttaacg gtgcgccaag tgacgcgcta       780
     ccctgtatct aacgggtata ttgttttcgg ctgttacttg caacaactct ttcccttgat       840
     acctcgtgcc tcgacattca attaaaattc gttttcgatt atcgttctcg ttcaaaaatt       900
     taaataaata aatagaaaca caaccattat ggcagaaaaa agtaaaccca ctcttgaaga       960
     cttaaagatt aagctcaaaa gtagagtaaa aagcattcgc cgcttagagg atcgattaga      1020
     tcaagggtcg attcctttgc aattatcgga attacaatgt agatcagatt gtttgaatgc      1080
     ttcaattgaa aaggctaacc atttgcagga gcaaatcgag gacataacag gtgatgatgc      1140
     atatgcagcc gagttggaag agctgataat tgtcaccaaa ggaaagataa tgtcgcttat      1200
     cgccgccttt gatgcagcaa gcgagacgaa gccagtgtct tcttcagccc caactcatgc      1260
     tagacttccg aaatttgcat tacccaaatt tagtggtaaa cactcggaat tcaaaaattt      1320
     cattagcctt tttgaaagac tagtccatag cgacaacagc ataccggtga tcgaaaaatt      1380
     taatcatttg atttcgtgcc tctctgatga agcattagga acaataaagg cgttccaagt      1440
     caccgaggca aattatgaaa aggccatggc tggcctaaaa cgagtgtatg acaacgatta      1500
     tttgattttc acgaataata tttccacatt gttcaatctg ccgagaatgt cgcatcaatc      1560
     tgcatcatct ctaagaactc taatcgatac tgtttcgtcg atttacggat cgttactgtc      1620
     gatcggagat gatacaacaa tttcgaatgc aatgctcatt catctcgttt taaacagagt      1680
     cgacccagtg acgaaacaaa agtgggatga acagcttact tatgagaagt tgccgctttg      1740
     gtccgacttt gagaaagtct tgaatcgtcg ataccagcat ctgtctgctg aagaatcgac      1800
     caagccaagg caagacaaag tcatgccaag caagcaacat aatcgcagtt catttgcttg      1860
     ttcttccact tccaccaaca gtagaactca gcaaacttgt agctactgca attcaggaga      1920
     ccatgtagtg tcaaattgcc cttcattttc gcgtctctcg gtgatgcaaa ggtttgagtt      1980
     tgctaagtcg gcatccctat gcattaattg tctgcgaaaa ggccacgctg ttgtaaaatg      2040
     caaagccaat aaatgtcgag tgtgcagccg ctcacatcat acattattgc atcgatacac      2100
     agtgtcggct aatagtctcg cgttgccacc accccaagag agtccttctc ctccatcaaa      2160
     tcagaatcaa ccttccacgt cacatgtttt gcatgcgaca gcgttggaca gggtaattct      2220
     ggctacgtcg atcgtaagcg tccgaactaa gagcggtgaa cacattctgg ccagagctct      2280
     gctcgactct ggatcacaaa caaatttcat taccgaggac ctcgctaatc gcttacagat      2340
     ccgtagagag gagtcctgta ttaacttgct tggaattggt gaatctaatt cccaagtaaa      2400
     ggataaaata cacacagtgg tgaagtcgcg aataaatggt agtgagttct cctttgattt      2460
     ttggatcctg aaatcaattt caggttatca ccctgaccag tcagtgaatg tgactgactg      2520
     gcgaatccca gagaacctac cactggcaga cccttatttc tacaagccac aaagaataga      2580
     tatgttaatt ggagcagaat cgttctttga attattagct gttggtcaaa ttaaacaagg      2640
     tcctgacttt ccaactcttc agaaaaccct tcttggttgg gttgtgtcgg gaaaatatgt      2700
     ttccaggagt tctgctcctc aaattacaaa cagtttgagt tgcagtgaag agttgctagt      2760
     atccatcgat aggaccttga aaaagttttg gtcactggaa gaaatgccat ctaccaagaa      2820
     aattgccaca cctgagcaca agctatgtga agaacactat cgtaagacga ctcaggtact      2880
     atcatcaggt cggttcgaag taaggctccc gtttaaatca gatccaaatt gtttaggaaa      2940
     ctcctttgag gttgcgaaac ggcggttttt gtcgcttgaa agacgattgc atcgtgaccc      3000
     tgagttgaag aaaatgtact tggaattcat ggaagagtac ctctccttag gtcatatgtc      3060
     tcctactgac aatacgattc cgtctactcc acactacgta atccctcatc agtgtgttct      3120
     gaggccccaa agtacgtcta ccaagctccg agtcgtgttc gatgcttcgt ccaagacgtc      3180
     ctcacaggtg gccttaaatg acattctgat ggtgggacct accattcaag aggaattata      3240
     ctcgacactg ctccgtttcc gtctgcacag gtttgccctg actgctgatg ttaaaaagat      3300
     gtatcgccaa gtgatggtga acgaagcgga tcggcagttt cagctcatag tgtggagaag      3360
     agacccttct gaatccttga gattatacaa gctcaacact gtaacctatg ggactggacc      3420
     agccccattc ttagctatcc ggtgtttgaa aaggttgagt gagtctgcga agctctcatt      3480
     ccctagagct gctaacgtta ttgggtccga cttttacgtc gatgacttgt tgactggtgc      3540
     tgcatgcgta gaggagctaa gggcaattaa gtccgaagtg tctcaggttc ttcagaccgc      3600
     agggtttgag ttgactaagt ggttttcaaa ctcacccgag atcaccgcat ctgagagcac      3660
     agccaaaccc ataacaatct cggattcaga gtcgacaaag gcgttaggaa tctcatggtt      3720
     acctactgac gatgccttta agttcaaaat tgacaattca gttatgggtc tccgagcgac      3780
     aaaacggaac atactatcgg tgacatcaaa gttgtttgac cccctaggtt tattaagtcc      3840
     tatcgttata aaaggcaaga tcctattgca ggagctttgg cttaacaaac tagattggga      3900
     tgagtcgatc ccgctgcatt tggaaacagc gtggaataag ttgaaaaata cactatctca      3960
     attggaagac atatccatat ctcggtttgt gtattccgat ccgatgtcac cggttcaaat      4020
     acatgccttt gctgacgcct ccatgagagc gtatggagcg tgcgtctata tacgtagcag      4080
     aactgcagaa ggtttaaaag tatcattgtt gacttcgaaa tccaaagtag cgccgctcaa      4140
     gaccaaaacg ctcccaaggc ttgagttatg tgccgctcac cttctcgcag atctctgtca      4200
     cagaatcaag cccctattaa acgtgcccat tgaacgagtc gtttattggt cggattcaga      4260
     ggtaactctc cattggatcc ggtctcatcc atcgtcgctg tcgactttcg tttcaaatag      4320
     agtggctgag attcaagagt ggtcagatga tgctacgtgg cggcatgtac ccacgaaaca      4380
     gaacccagca gatattgtct caagaggttg tgacgtcgac gaaatcgttc agtcaatttg      4440
     gttcgaagga ccatcatttc tgaaagagga agaagaaaac tggcccaaga acgctcattt      4500
     cgaacactcc gatgatcttc agctggaaaa gaggaagact gcggtcgggc tgaccgcggc      4560
     tgtgcgaagt tcggagctgt tagatgtcat cgagggattc tcgtcacatc tcaaactgtt      4620
     tagagtgttc gtgtatgtgt tccgctttat aagaaaatgt aaagacccaa gcctaaaatt      4680
     cgaaaaaact atctcaccga ccgaatacaa tgaagccttt tataaaattg tcgaaatcgt      4740
     ccagcatcac gagtatcaag gagaaatcga aaaggttagg aaaggatcta caattggtcc      4800
     tagtcttcag cggttgaacc cattcatcca tgaagacaca gggacttggt gtaacttttc      4860
     gttgttgcga gtgggggggc gactagctaa agctcctata tcatacgatg ccaagtttcc      4920
     tctgcttttg actaagcgct cgcaattcgt gcgaagctat attcgtcatc tgcaccattc      4980
     gaattttcat gtcggcccac gagcacttgt gagcatcctt cgacagagcg tgtggatagt      5040
     gaacgctcag gaggtctgcc gtcagacagt tcgatcctgt atgcgctgtt ttaaatgcaa      5100
     gcctcgattg ctgacgcaac tcatggggaa tttacccgca gatcgactcc gtgctctccg      5160
     cccattttca atttgcggcg ttgatttttg tggaccagtg cacacgacat tgaaaattcg      5220
     cggaaggccc ccatacaagt catacattgc gctttttgtt tgttttgcgt ccaaggcggt      5280
     tcacctagaa atagtttccg atctaaccac tgattgtttt ttgttggctt ttcaaaggtt      5340
     cgtcgggcgc cgaggatatc cccaagtcgt tcattgcgac aacgggacga acttcgtcgg      5400
     agcgagccgc catctcagcg ctctgcggat caggctcaag gagcagggag acgcaattcg      5460
     cgactttgcg tcaaaaaacg gatgcgaatt tgcgttcata ccgccgcgag ctcctcacat      5520
     gggagggcta tgggaggcag gtgtaaaaac tgccaagagc ctactcctac gggcggtagg      5580
     cagcgcgctc ctaaccgccg aagagctcgc cacagtcctc gtcggcatcg aggccataat      5640
     gaactcgagg ccgctgggag ccatcagcca agatccaagc gacggcgagg ccctaacacc      5700
     cgggcacctg ctgacaggcg ggtcgctcat cgccccccca gcactgcgga ctccggacca      5760
     ggagagtctc agttgcttgc ggcgatggcg acttgtctcg tcagtcaggc aagcgttttg      5820
     gcagcgatgg tcccgcgaat atgtcctggg gctgcaaatt cggggcaaat ggcaccagca      5880
     gcaaccgaac ctcgaggaag gagacctcgt catcgtggcc gaggacaatc tgccgcctca      5940
     ggagtggctc gtagggaggg tcatagccac gcacgcagga gaggacggca tggtcagggt      6000
     cgtcgaaata aggactagca ctggagcggt ttttcggcgg cccatacaca aattagcgcc      6060
     gctcccaatg tgttgaagcc gatgcaggcg ttcaacgggg ccgg                       6104
//
ID   BEL-8_DPe-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   AAIZ01005496;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DPe_;
KW   BEL-8_DPe-I; BEL-8_DPe-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-316
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
DR   Genome; AAIZ01005496; Positions   14191   13876.
XX
SQ   Sequence 316 BP; 94 A; 64 C; 65 G; 93 T; 0 other;
     tgttgcgtga ccttccatcc atggccacaa ttattagtta tagatggaat tatgaattat        60
     gaagtctagt gtaagttagg ctagggcaaa gcgggagcgc aataaaagct cgctctctcg       120
     ctcttggcga attcgccccg ctttgccacc gtaggatagc tagagtaaga gattgaattg       180
     tgaagaaact ttagttgttc gccaaccttg aaatagatcg agcgtatcaa gtttttcgcc       240
     ccgccaaata aataatttaa attacagcca cccaaagttt tcggtaactg attagaaaaa       300
     ctcttctaat ttttca                                                       316
//
ID   BEL-8_DSer-I repbase;    DNA;    INV; 4289 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-8_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4289
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2005-2005 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2297..4117
FT                 /product="BEL-8_DSer-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MAQTAIDIALRKFIATTDRVSQFEAKIQPLDAPETTQ
FT                 PSPSTCKVRRDQIRALWEKVEKSYESCSELLSVSDDGADTSTVLEAKYSYC
FT                 YSVYSRCVAQLQEIIERGAAQSTLASSSGHTPPSTGCRLPPVDTEVFAGDY
FT                 LRWPTFRDLFTAVYIHNSRLTPVEKLFHLLSKTTGEAHAIVSKAPLTNEGF
FT                 VAAWQSLTDRFENRRLLVNSQLKILFNIQAVPQESGVALKDLQGTIQSCLT
FT                 ALEMSSIQVEAWDSLLVYMVSSKLPEVTLSLWEQSIHNKDRIPTWNELDAF
FT                 LTERHRTLEAIDDVSPTNSRHFPPELSTPRAPAPRLHSSDFRVTPTPRPRR
FT                 CDLCSRENHPLRRCPRFLQMTVVERSNIIRRKQLCLNCLARGHQQRDCPSA
FT                 HSCLTCRRRHHTLLHPRSCSSSVQIAPEPSSPVTAPIQRISAFSTRITSPN
FT                 ALNYWVPYDIKSRRSRGILSYPCRVCSGVHPLRKCHKFLRLSAEKRLSAVS
FT                 TNRYCSNCLAHEHSQGKCRSGDRCKTCNQHHHTLLHMPGSPVPAPRSQHRM
FT                 TPCSHSRYLLTALLNDTFFSSPLREDATASHHANALIRGPIQPIPRLPPSF
FT                 IRFRRRRHL"
XX
SQ   Sequence 4289 BP; 1094 A; 1196 C; 838 G; 1159 T; 2 other;
     ttggtccttc gagccggata mggatatcct tccgtccctt caccagcagt tcccggtgat        60
     ttttccgctg agataagtat atgcttgatt ccgtcttgtt ctcgctgccg gtcttagaca       120
     gtgggccgaa catttaattt cggtcgcacc gctgcaaaat ttattgtttt tcgttcgtgt       180
     caactccccg tccgagtttt cctgacacca cggcagtgag aaattccact tttctattcg       240
     cctccgaact tcgaaatttt ccatccgtgt ccgttttgtg tgcgccgcca tcctcctcgc       300
     cgtctcttcg attccccgtt gttcatccac ttgccaacgg tcgaggccta tgtgcagcca       360
     catacacaca cacgcattct aaacttgtgc taatatttcc gtgcaaaaaa agttctccgt       420
     gaacagtgaa attgtgtttc aaaaagaaag gcataattaa tattggccag ccggtgtgcg       480
     cttgtttcgg gaattcaccc tgatcgccga acagtctgcc gctgtcacga tattttttgt       540
     atgctgtatc catacacatt tttctgttcg cacaattcaa tacagtccac ttctcgacgc       600
     tccactgtgc caatacaaac cctacagttg ttcaagaaac agatttcgtc agccaaggat       660
     ttaaaataat ccgaatttta taaatcctat tttttattta tatcaattta cgatacatat       720
     attgggcaag cttcgcgcta ttctgcgctg agcatcgatc tccacaatta tttacataca       780
     tacatatata ttgggcaagc ttcgcgctat tctgcgctga gcatccaagt tattacatac       840
     atatatacac acgccagcat aagggcatac caagtaatta tttgtctttt ttttcgtctc       900
     ctctttgtgc ctagagcgtg tacaagcacc tgcactcatg cattccacag ccgcacagtg       960
     cctacgagac aaaatccgcc atctacaact ttcaacaact ttcgtgatcc aaggatttaa      1020
     cattatccga agtttataaa tcctattttt atttatatca attttacata catacatgta      1080
     tattgggcaa gcgtcgcgct attctgcgct gagcgatcca agctattaca tacatacata      1140
     tatacacacg cccgcataag ggcaagtaat tatttgtaat tttttttcgt ctcctctttg      1200
     tgcctagagc gtgtacaagc acctgcactc atactttcca cagccgaaca gtgccgacga      1260
     gataaaatcc gccacctaca attttaagga aatttcgtga gccaagaatt taaaattatc      1320
     cgaattttat ttatcctatt ttcatttagg tgaaagaaat acaaatttac acacatacct      1380
     ccatacatac aagcttcgcg ctattctgcg ctgagcatcg atctccacaa tctaatacat      1440
     acatatatgg gcaagcttcg cactattctg agctgagcag cgaaacccaa acacaaacga      1500
     gtgtttttta attgtcttcg atttaaccgc cgcaacggct gtgttgttgt tgccccttaa      1560
     gttctttggg tccctcactc atcactgctt tgccgacggc ttatcccagt gagctcttct      1620
     ccgcgaccaa aaacggatgt ttgtttttta aatactacct tcctagcgtt taaaaaatta      1680
     aacatctgcg ctcatagtta aacattcatt aacagatcca gaatttgaat ttaattaatt      1740
     aatttaagtt aattaatttt taattcaatc ttttcaactg agccgccgca acggtcgtgt      1800
     tgttctttcc tcttgtttct tttgagttcc gcactgcttt gccgacggca tgacccattg      1860
     agttgtctct caaacaaaag ccaagggttt atttcgacca tttcggatcc gtgataaata      1920
     aagttggcaa caattacttc cgaccaatac gttcctaaat ccgtatttaa tttattacgg      1980
     gatccatcca catttcgtga ccaattttct gagcaaaatg taagcaaacc tccatgtccg      2040
     aaatatattg aatattaaga gaaaatacaa ggatttcaat ttgcgaattc actactattc      2100
     aatactagcc cgaactatat atatatatat atatatatat atatatattc caaaatacaa      2160
     aagaattgta atttcaaata aaaattattc ctgtacttta attacggccg attccgtcaa      2220
     tccgtttggg aagatcccag tccgcatttc cgcgaccctc cccgattaac tttaaatcca      2280
     ctgctcgacc acaaaaatgg ctcaaaccgc catcgacatt gcgttgagga agtttattgc      2340
     cacgacagac cgtgtgagtc aattcgaggc aaagatccaa cctctagacg ccccagaaac      2400
     cacccagccc tctccgtcca cgtgtaaagt gcgtcgcgac caaatccggg ctttgtggga      2460
     aaaggtggag aagagttacg agagctgctc cgaactgctc tccgtgtctg acgacggcgc      2520
     ggacacttca acggtgttag aagctaagta tagctactgc tactccgttt attccaggtg      2580
     tgtggcccag ctgcaggaga taatagaaag gggcgcggcc cagtcaactc tggcttccag      2640
     cagtggccac acaccccctt ccaccggttg tcgtttacca ccggtagaca ccgaggtgtt      2700
     tgcgggcgac tatcttcgtt ggcccacgtt cagagacctt ttcacggcgg tttatattca      2760
     caactcgcgt ctcaccccgg tggagaaatt gttccacctm ctatccaaga caactggcga      2820
     agcgcacgcc attgtttcca aagccccgct caccaatgag gggttcgtcg cagcttggca      2880
     aagcctcacc gaccgcttcg agaaccggcg gttgttggtc aacagccagt tgaaaatcct      2940
     cttcaacatc caggctgtcc ctcaagaatc gggagtcgcg ctaaaagacc tgcaaggcac      3000
     catccaaagc tgcctgaccg ccctagagat gtcctccatt caagttgagg cttgggatag      3060
     tcttttggtg tatatggttt cctcaaagct ccccgaagta accctttctc tgtgggaaca      3120
     atccatccac aacaaagaca gaattccgac ttggaacgag ctagacgcgt ttctgaccga      3180
     acgccatcgt acgctggagg ccatcgacga cgtttcgcct accaactcaa ggcattttcc      3240
     gccagagttg tcgactccga gggccccagc gccccggctc cattcttccg acttcagagt      3300
     gactccaaca cccagaccca gaaggtgtga cctatgttcc agggaaaacc atcccctgcg      3360
     aagatgtccc cgtttccttc aaatgaccgt agtcgagagg tcaaatatca tccgaagaaa      3420
     gcaactctgc ttgaattgtt tggcacgagg ccatcagcag cgggattgcc ccagtgccca      3480
     ctcctgcctt acatgccgca gacggcatca caccctgctg catcccagaa gctgttcctc      3540
     cagtgttcag attgctcctg aaccttccag cccagtaacc gcaccgatcc aaaggatatc      3600
     cgcgttctcc acgcgaatca cttctcccaa cgccttaaat tactgggtac cctacgacat      3660
     caagagcaga cgttcccgag gtattttatc ctacccatgc cgagtctgca gcggagtcca      3720
     tccgcttcga aaatgccaca agttcctcag gcttagtgct gagaagaggc tcagcgcggt      3780
     gtccaccaac cgctactgtt cgaactgttt ggcccacgaa cattcccaag gcaagtgccg      3840
     cagtggtgac cgatgcaaga cgtgcaatca gcatcaccac acgctcctgc atatgccggg      3900
     aagtccagtt cccgcacccc gatcgcagca tcggatgact ccgtgctccc attcgcgtta      3960
     tttactgacc gctcttctaa atgatacatt tttttccagt ccgcttcgag aagatgccac      4020
     cgcttcgcac cacgcgaacg ctctgatcag aggtccaatc caaccgattc cgaggttgcc      4080
     accgagcttc atccgcttcc gacgtcgacg tcacctctag gatcctgcgc ctctccccgc      4140
     ccctcctcag ccactccacg gcctccgtcc accgctccag tccggtgcgc ataggcaatt      4200
     tccgccgcta gccaggaccc cctgcagaac gcggcaggct tatacaggac gaatatgttg      4260
     caacccgagt agttgcaagg gggggagaa                                        4289
//
ID   BEL-8_DSer-LTR repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-460
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2014-2014 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 460 BP; 77 A; 157 C; 115 G; 109 T; 2 other;
     tgttcacgtc agaaggccct tcgcggcggc cgcggcgccg cctctgtcca ccgagcctcc        60
     aaagccttgg ccgctcttgc actcccgcaa gtcggctctt cgcgcactgc tcatcgggct       120
     agtctaagcg ctcccgcgcc cactcttcga tgttcgcgaa cgcccgctcc cgagttcccg       180
     agcttcgctc gctgctaagc gagctgaggg acggctwgtt cgcgctccac ttctcgggcc       240
     cgctctcgca ctgttaagcg tagcttatcg gtcgggagcg cggcccttac atttaagcta       300
     gakttagtct tatgtatgca gcgcaataaa gctgaccatt tgatttgccc acgacgcccc       360
     cgtcttttac ttttcacctt cgcttgcgac gtgggaattt ccattgggct acatttgaca       420
     agacaggatc ttcagcggca ggatcgcccc cctacaaaca                             460
//
ID   BEL-8_DTa-I repbase;    DNA;    INV; 5755 BP.
XX
AC   AFFI01003991;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DTa_;
KW   BEL-8_DTa-LTR; BEL-8_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5755
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003991; Positions   11440    5686.
XX
CC   Positions [4784-5365] - Integrase core
CC   'TATGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           497..1756
FT                 /product="BEL-8_DTa-I_1p"
FT                 /translation="MVDPADAAAGSEVNTSKLISLRHQRTTITRNMTNLKN
FT                 KLDQEKETLNVPALECYLQVLEGHFRQISTTQGQIENLHSADTERNSLDEL
FT                 FVEIKTTLLAAISRKRRTSISGDTTLNNSLNSSVMHHNRLPNLKMPRFDGK
FT                 YANYKRFAGAFSNLVETDGGLSNIDKFTYLLNCLTGPALEVVQSFQITEEN
FT                 YSKAKERLKQRYDNDVLIFLDYISNLFAVPKIENANAAKLLNVVDTISAIR
FT                 SSVLSLGSAANVMDAIIIHLMLSKLDPETKMQYQEKQSYDQLPSWDDCCAF
FT                 LTRRCQYLEARERDHPVGGTDIPRLSSSKQPRKSKAFMTVNATCVYCKGSS
FT                 HYISSCTAFNECHPNERTSFAKRARLCLNCLRPNHILKDCKSKSRCKKCHN
FT                 NVILIHGKSSGPTYRRNPTQPRVCTA"
FT   CDS           4745..5755
FT                 /product="BEL-8_DTa-I_2p"
FT                 /translation="MTQIMGSLPADRLRCQRPFLVTGVDFCGPFMTSYRIR
FT                 SRAPYKTYVAIFICFSSQAVHIEPVSDLSSNAFLLCLRRFVSRRGLPKRVY
FT                 CYNGTNFVGASAKLSEFKQSFLSNEAISQLRQYSATKGFEFCFIQPRAPHF
FT                 GGLWEAAVKSAKTLLVKNMAEANLTYEELQTILTEIEAILNSRPITPASAD
FT                 PNDGEAVSPAHFLIGSSLISAPEEQFNETSNIHHLDRWQRISFLKQQFWNL
FT                 FRRDYFHTLQQRTKWTSPQPNLRVGQLVLIHEDNAAPQNWPLGRVIATIQG
FT                 RQGASRGFPNAEGSSSKTSAQNRPTSHRISKKSVEGFRILSRPGV"
FT   CDS           join(2349..3713,3717..4688)
FT                 /product="BEL-8_DTa-I_3p"
FT                 /translation="MVHRFWEIEEYHTTPSIFSAEEQACEDHFVTNVQWNT
FT                 EGRVQVRLPFKEGHPTLGSSFKMALKRFNMLERKLLRNPKLKSQYHQFMQE
FT                 YIDQGHMSRLEDIDWNHQHFFIPHHCVLRPQSSSTKLRVVFDASAKSSNGQ
FT                 SLNDILMTGPTIQQDLVTTILSFRLHKYVLSGDISKMYRQFVVDERDRKYQ
FT                 LILWKGDSEKLQIYQLKTVTYGLSAAPFLAIRSLAYIADAFASEFPIGASV
FT                 LKSDLYVDDVLIGADDLVLLDIKRRQLTDMLERAGLVLTKFHSNSTSLVDG
FT                 LQSVFKIQLDEPDTVKALGLAWKPLQDTFGFHHEAFVNELQTRRTVLSTIA
FT                 RVLDSLGLISPIVIRCKMFLQNLTLLKLDWDEPLEGNLRLTWESLQGELKN
FT                 TSNLCIPRFVHTSLTHDSELHGFADASKRAYGCCIYIRAKTIQGIEVNLLI
FT                 AKSRVEPIKVTLPKLELCAAVLLYRTYKKIAQKIAPYIGKVYFWTDSKIVL
FT                 QWLKMHSSQLNCFVGNRISELQQATDEVEWQHVPSAQNPADIVSRGSCATE
FT                 LHKTIWFQGPQFLKEDNALWPRHVEPTQSVPEVRARAISLYIKGEPSQSQS
FT                 PPSSATKLRKTCQSAANLQEASVIDQIFENSSSYHRAMRTIAFVFRCFNKV
FT                 PANRAINKEEVVHISAPERNVVFWRVIEHIQQSVYHNEISLLKKQQRVKDR
FT                 LQRLCPFLEEIQVDSHYNSIIVIRVGGRLANGEMPYVAKFPALVPNCMSSF
FT                 YTNRISTQEPRCSFLSYVNGYGYQTQGS"
XX
SQ   Sequence 5755 BP; 1705 A; 1449 C; 1231 G; 1370 T; 0 other;
     ttacttggcg accgtgacag gacgtgcgat ccgtccgaca gtgtcaagtt gttggtgttg        60
     tacaggccac gctattaatt tccaccagac cacaaaggcg tctcgcagcg aagttcaggc       120
     aaaagcgccg caacacaagc caaccagcgc gctcatctta ggccacacca aaggcattgg       180
     agaaacatcc agaagacgat cgtggcaaca ctcccagttc atatacaagg cggatcatcc       240
     acgtggactg gtgctccatc caactcacac aatcatggga ttgcagtgag tcaccgtaag       300
     cgagagaaca taacctcaat gtcattttct gcaataaatc attattacgc aaccaaatat       360
     tctgtccgca aaagttgtta tcgagattca ttgttatttg ctgtagttgt agtgttcatt       420
     tggtaggcca aatttaacta gctccattta gcattttatt tttaagagat agaagttata       480
     ccagatttgc cgcaaaatgg tcgatccagc cgatgctgcc gctggaagcg aagtcaacac       540
     cagcaaatta atatccctca ggcatcaacg gactacgatt acgcgaaaca tgaccaattt       600
     gaagaacaaa ctcgaccagg agaaggagac tttaaacgtg ccagctttag aatgttatct       660
     tcaagtacta gaagggcact ttcgtcaaat ttccacgact caaggccaaa ttgagaatct       720
     acacagtgcc gacaccgaac gaaacagttt ggatgagctg ttcgtggaaa ttaaaacaac       780
     gctgttggcc gcaatatcaa ggaaacgtcg gacaagcatt tcaggagaca cgacattgaa       840
     caattcactc aattcgtcag tcatgcatca caatcgtctg ccaaatctga agatgccgag       900
     attcgacgga aaatacgcaa actacaaacg tttcgctggt gcattctcta atctcgtgga       960
     aacggatggt ggcctctcga acatcgacaa gtttacatac ctgctcaatt gcttaactgg      1020
     gccagctctt gaagtagtgc agtcattcca gattaccgag gaaaactact cgaaggcaaa      1080
     ggagcggttg aagcagcgat acgataacga cgttttaatt ttcctggact acatttcaaa      1140
     tttatttgca gttccaaaaa tcgaaaatgc caatgcagcc aaacttctaa atgtcgtcga      1200
     tacgatatcc gcaattcgat cgtcagtact ctcacttgga tcagcagcaa acgtaatgga      1260
     tgcaatcata attcatctga tgctaagcaa actggatcca gagacaaaaa tgcagtacca      1320
     agaaaagcag agttacgatc aattaccatc ttgggacgat tgctgcgcct ttctaactcg      1380
     ccgttgtcaa tatcttgaag cacgcgaaag ggatcacccc gtaggtggaa ccgacatacc      1440
     caggctatca tcatcgaagc aaccacgcaa atcgaaggca tttatgaccg ttaacgcaac      1500
     ctgcgtttat tgcaagggtt catctcacta catctctagt tgcacagctt tcaacgagtg      1560
     ccacccaaac gagcgcacca gctttgcaaa acgcgcacgc ctgtgcctaa actgcctaag      1620
     gccaaatcac attctgaagg attgcaaatc gaagtcgcgt tgcaagaagt gccacaacaa      1680
     cgtcattctc atccacggaa aatcctcagg accaacgtat cgccgcaatc caacacaacc      1740
     aagagtctgt acagcttaat tcaaacgtcg ccctgttaac gcgagcatct aagcagggag      1800
     ttttaccaac agctgtcata cagatcaagg acgtgaccgg caattatcag ctagttcgag      1860
     ctctagtaga ttcttgctcc gaggtcaatt taatcaccga ggaaaccgcc aagcgattaa      1920
     acctccaaaa agcgcgggtt tctcaggctt tcagcgggat atcggaagct tgtgaaccaa      1980
     ttcattacaa tgtcttcgcc acactcaaat ctcgaatttc aaatttccaa tggtcatccg      2040
     aattcggagt cattaagcgg atctgttcaa ggcaaccccg ggaatatatc gacgcctcca      2100
     catggaagct tcccgaggga atcgtgcttg cagaccccag attcttcgaa ccgaacaaaa      2160
     tcgacgtcct aataagcacc gaaggatttt ttgaagctat tctatgagaa aaacaatcgc      2220
     taggtcaaca tttgcctagt ctactcaaca cggagtttgg gtggatcgtc ggcggtcatt      2280
     tgaattcatc aaaagggcag ccaacctatc agtgtctttt aacgagatcc gacagttcaa      2340
     tcgaggacat ggtacatcgc ttctgggaaa tagaagagta ccacacgaca ccatcaatct      2400
     tctctgctga ggaacaagcg tgcgaagatc atttcgtaac caacgtccag tggaataccg      2460
     aaggacgtgt ccaagtacgt ctaccattca aggaaggaca tcccaccctc ggatcttctt      2520
     tcaaaatggc attaaaacgc ttcaacatgc tcgaacgcaa actcttgcgc aaccccaagt      2580
     taaagagtca atatcatcaa ttcatgcagg aatacatcga ccaagggcac atgtctcggc      2640
     ttgaggacat agactggaat catcaacact tctttattcc gcatcattgc gttttaagac      2700
     cgcaaagcag ctcgacaaag ctccgcgtcg tctttgacgc ttcggccaag tcgtcaaatg      2760
     gccaatcact gaacgacatc ttgatgacgg gtcctacaat ccaacaggat ctcgttacca      2820
     ctatactttc attccgacta cacaaatatg tcttatctgg cgacataagt aagatgtaca      2880
     gacaattcgt agtggatgaa cgagacagga agtatcaatt aattctttgg aaaggtgact      2940
     ccgaaaaact gcaaatctac caactcaaga cggtcacata cgggctgtca gccgccccat      3000
     tcctagctat tcgcagcttg gcgtatatcg ccgacgcatt tgcaagtgag tttccgatcg      3060
     gagctagcgt actcaaatcc gatttatacg tggacgacgt actcatcggt gctgacgacc      3120
     ttgtcctact agatataaaa aggcgtcagc taaccgatat gctggaaaga gcgggcctcg      3180
     tattaacgaa atttcacagc aactcaacta gcttggtaga cggactccaa tctgtgttta      3240
     agattcaact cgacgagcca gataccgtta aagccctcgg attagcgtgg aagccccttc      3300
     aggatacgtt cggctttcac cacgaggctt tcgtcaacga actacagact cgaagaacag      3360
     ttctctcaac cattgcacgg gttttagatt ctttagggtt gatcagtcca attgtaatac      3420
     gttgtaaaat gttcctacaa aatctaactc ttttaaaatt agattgggac gaacccttag      3480
     aaggcaattt acggctaacc tgggaatctc ttcagggaga acttaagaat acctcgaatc      3540
     tatgcattcc aagatttgtg cacacgtcac tcacccacga tagcgaattg cacggcttcg      3600
     ccgacgcgtc gaaacgcgcg tatggatgct gcatttacat acgagctaag acgatccaag      3660
     gaatcgaagt caatctgcta atagccaaat ctcgcgtaga gccaatcaag gtataaacgc      3720
     ttccgaaatt ggagttatgc gctgcagttt tgctctatcg tacgtacaaa aaaatagctc      3780
     agaagatagc gccatacatc ggaaaggtct acttttggac tgactccaag atagtcctac      3840
     aatggctaaa aatgcattct tctcagctga actgctttgt aggaaatcgc atctcagagc      3900
     tccagcaagc taccgacgag gttgagtggc aacacgtgcc ctcagcacag aacccagctg      3960
     atatagtgtc gagaggttcc tgcgctacag agttacataa aactatctgg tttcaagggc      4020
     ctcaattttt gaaggaagat aatgctcttt ggccacgcca tgtcgagccc actcaatcgg      4080
     ttccggaagt gcgggcaagg gcgatcagtc tttacataaa aggagagccc tcccagtcac      4140
     aatcacctcc gtcctcggcc acaaagctaa ggaaaacctg ccagagcgca gcaaatctgc      4200
     aggaagcatc agtcatcgac caaatcttcg agaactcatc gtcttatcac cgagctatgc      4260
     gaactattgc attcgtattt cgctgcttta ataaagttcc agctaacagg gccataaaca      4320
     aagaagaagt agtacacatc tcagcgccag agcgtaacgt agttttttgg cgggtaattg      4380
     aacacataca gcaatcagta tatcacaatg aaatctctct tctaaagaaa caacagcgtg      4440
     ttaaagacag gttgcagcgt ctatgtccgt ttttagagga aattcaagta gactcacact      4500
     ataactcgat aatcgtaatt cgggtcggtg ggcgattagc caacggagag atgccttacg      4560
     tcgctaaatt cccagctttg gtgccaaatt gtatgtcgag tttctacaca aatcgaatct      4620
     ccacgcagga gccaaggtgc tcctttctct cttacgtgaa cggatatgga taccaaacgc      4680
     aagggagtta gctcgaaagg tcgtacgctc atgtacgcat tgcttccatt acaaaccgaa      4740
     gttgatgact caaatcatgg gttccctacc cgcagaccgc ttgcgctgcc aaagaccgtt      4800
     tcttgtcacc ggagttgact tctgcggacc attcatgacg tcgtatcgaa tccgcagcag      4860
     agccccatac aaaacatacg tagccatatt catatgtttt tcgtcgcaag ccgtacatat      4920
     cgaaccagtt tcagatctct cctcgaacgc attcttgctg tgcctccgaa ggttcgtgtc      4980
     ccgtcgagga ctgccaaagc gagtgtactg ctacaatggt actaatttcg tgggagcatc      5040
     ggctaagcta tctgaattta aacagtcatt cttgagcaat gaagcgatca gccagctacg      5100
     gcaatacagc gcaactaaag ggttcgagtt ctgcttcatc caaccccgtg cgccccactt      5160
     cgggggtctg tgggaagccg cggttaagtc cgctaaaact ttgctggtga aaaacatggc      5220
     cgaagccaac ttaacgtacg aggagctaca aacaatcctc acggagatag aagcgatact      5280
     caattcgcga ccaatcactc cagcgtcagc cgatccaaac gatggagaag cggtgtctcc      5340
     agctcacttc cttattggat catcgctaat ctcagctcct gaagaacaat ttaacgaaac      5400
     gtcaaacatt caccacctgg atcgatggca gcgcatttcg tttcttaaac agcaattttg      5460
     gaatttgttt cgtcgagact attttcacac gctccagcaa cgcacaaaat ggaccagtcc      5520
     acagcccaat ctaagggtag gacaactggt tcttatacac gaggacaacg ccgctcccca      5580
     aaactggcca ctgggacgtg tcatcgcaac gattcaagga cgacaaggtg cgagtcgtgg      5640
     atttccaaac gcagaaggca gttcttcgaa gaccagtgca caaaatcgcc ccacttccca      5700
     tcgaataagc aagaagtcag ttgaaggatt tcggatccta tcaaggccgg gagta           5755
//
ID   BEL-8_DTa-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   AFFI01003991;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DTa_;
KW   BEL-8_DTa-I; BEL-8_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-311
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003991; Positions    5685    5375.
XX
SQ   Sequence 311 BP; 98 A; 56 C; 65 G; 92 T; 0 other;
     tgttggagcc caattcctaa cataattgaa ttcatcgtct ccaatgttat ttcttggaat        60
     gttaacagat ttagtatatt tttataattt tgtacggtca ctttgtaaga cccgcctgga       120
     aggaggcttt ttcggtaatt tttagtgtgt gtataagaga gagaagaaaa gaacgtgaaa       180
     ttataactga agcgcaaaaa cgtggacgaa aacggctttt actttacaac aaccggtcac       240
     tgtcggtgca atcaattcca gccccgtacc cgaagaaatt cggctgatta actcagagaa       300
     aggtctgaac a                                                            311
//
ID   BEL-8_DWil-I repbase;    DNA;    INV; 6146 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DWil_;
KW   BEL-8_DWil-LTR; BEL-8_DWil-I.
XX
NM   BEL-8_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-6146
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..1375
FT                 /product="BEL-8_DWil-I_1p"
FT                 /translation="MSNKMKTRGRKKRINMDAMETPKSAVNESTAGESEIE
FT                 RDASNKSKAPKDREDNTNILESVQRMMTQLQEQIASQSSKIEAIHNGQEQQ
FT                 IQEIHLVQSEIVNLKIANESITDCISELEKTHALGGTQGAAILDGAQRHGA
FT                 IMGAPHALGGTQGAANIDGAQRHGAIMGAPHALGGTQGAANIDGAQRHGAI
FT                 MGAPHALGGTQGAANLDGAQRHGAIMGAPHALGGTQGAANIDGAQRHGAIM
FT                 GAPHALGGTQGAANMDGAQRHGAIMGAPHALGGTQGAANIDGAQRHGAIMG
FT                 APHALGGTQGAANLDGAQRHGAIMGAPHALGGTQGAANLDGATTSWSHNGR
FT                 SACFEWQHRVLPMMVLHKTKCHLKLQPEYLVSTNLSPLMLVRVSLVMLRVA
FT                 FGLVRLVRDNTHIIICRGTELWICQNLVVGQKIGQYLLQCS"
FT   CDS           1105..6126
FT                 /product="BEL-8_DWil-I_2p"
FT                 /translation="MLRVAAQGATDDGATQNKMPFKTTTGISGVYEPFPIN
FT                 VGTGESGNVTGCVRVGQASQGQYPHNYMSGHRIMDLPEFSGRAEDWPVFIT
FT                 MFIESSAAYGYTQLENVIRLQKSLKGAAKEEVKGLLVNPANVPHIIEHLQF
FT                 MYGRPELLIKSQLEMVNDIPQIPENNLERMIPFATKVKNLVIFLQSSNAVL
FT                 HLQNPSLLDQLVSKMPMSKRMQWQEFSSQIYPYANLMDFSXWLNSIARTIA
FT                 KVTLMTTSNRPTSKGDCRHNPKLVMQTNTGEYQKKDKKYTKVCTECNGDHS
FT                 LSECDVYVKADVNEKWNMVKKLGVCFSCLKRNHNMISCKFKRRCNISGCKS
FT                 SHHKSLHNPNRQTVEEDKAEAATHTVKSSMKRLLVKVLPVEIMGPQNTLVK
FT                 TFAFLDEGSNVTLINENLAKKLGVKENMDRLTLNWIKNHAINLNTTVCHLK
FT                 IRGINGNKNWLQLKGTTIPDLELPLQSMDHQTLAEEYIRVANLPIASYTDA
FT                 KPTILIGIDNTHLVKTIRSVDIGPRLVASKTPLGWVIFGSRADHSNTSPLV
FT                 TSVFHANSLEDQMNREMHDLMADYFTTENFGVRPYIKSVESADIIRAKEIL
FT                 QNTTVKLEGEYETGLLWSKETLNLPDSYSMALKRLQLIEHKIIRSNSVKTY
FT                 DEAIMDFVKKGYAVKMTKLQTCVTSSKTWYLPHFAVYNVNKPGKLRLVFDA
FT                 AASIEEVSLNSRLLKGPDENPPLTQILFQFRQGAVAVCADIKEMFLQVRVR
FT                 QEDQDCLRFLWRHGDTTREVDTYKMTVMIFGATCSPCCAQYVKNINAQNST
FT                 SSKEVIDAIQNNHYVDDFVASFVSEQKAYDISSEVKRVHELAHFELRGFVS
FT                 NSKWVQNKLNKEEKNKTDKLPVSMDKKAVDKVLGMYWYNDIDQFTFDLKMN
FT                 RVEQSILKAENCPTKRQLLSLVMSIYDPLGMLADLTIHGKILIQDVWRSGI
FT                 HWNDLIPEELFIRFKNWVLQIENVKSFRLNRCYSRNFMSSQANIELHIFVD
FT                 ASEQAFAAVGYWRIILDGLIETIFVAGKTRCAPIKTLSVPRLELQAAVLGT
FT                 RLKTLILESHSVNVQKYTLWSDSKTVIAWIQSDHRKYKQFVAHRINEILET
FT                 TNENDWRWVPTHLNAADKATRTKVKIKYEPGNIWTRGPEFLLKDESSWPVQ
FT                 EKIYVENDSSEVKRVYLTTSVENIIDLNRFSKYLKLKRTMGWILRFKQRIL
FT                 KRQCDNDVTTLSSRELQDAENTLVKIMQKEIYHKELADLQANSCVSNESSI
FT                 FSLTPTMNADGILVVNGRLDYATSLSQSARQPIILPKKHKLTDLIVTSYHE
FT                 RFHHQNDELIITEIRQKFWIICLRAAVKRAKTVCQFCKNRKIQPQATLMGQ
FT                 LPTDRVTPYQRPFSYVGLDYFGPVTVTIGRRHEKRWVALFTCLTIRAIHLE
FT                 LAADLSTDACILCIRNFVNRRGIPIRIRSDMGTNFVGADRLIREVKDLFDW
FT                 NYIAEEMANKGIEWKFNCPANPSSGGCWERLVQSVKKVLVITLQDKAPQVE
FT                 TLRSLLIEAENIINSRPLTHIPVDKDDPGPLTPNHFLLGTTNSTQTPGEED
FT                 NFCHRKQYRICQQLKNTFWKRWIREYLPTLTKRTKWFAPIRPIKMGDLVII
FT                 CDENQPRASWKRGIIVKVIPARDGLIRVAEVQTNAGILKRPVSKLAVLDVL
FT                 GKTPE"
XX
SQ   Sequence 6146 BP; 2099 A; 1128 C; 1374 G; 1543 T; 2 other;
     ttctttattt taacttaaat aatatgtaaa agtgctttga tggtgtcgga attgactaga        60
     aatgtgaaat atgagcaata aaatgaaaac gcgcgggaga aaaaagcgta tcaatatgga       120
     cgcgatggaa acgccgaaat cggcggtaaa cgagtctacc gcgggagaga gcgagataga       180
     aagagacgct tccaataaaa gcaaagcgcc aaaagacaga gaagacaata cgaatatatt       240
     ggaaagtgtg caaagaatga tgacgcaatt gcaagaacaa attgcgtcac aaagttcaaa       300
     aattgaagct atccacaatg gacaagaaca acaaatacaa gaaattcatt tagtgcaaag       360
     tgaaatagtt aatttaaaaa ttgctaatga atctataact gactgcattt cagaattgga       420
     gaagactcat gctttgggcg gcacacaggg tgctgctatc ttggacggtg cacaacgtca       480
     tggagccata atgggagctc cgcatgcttt gggtggcaca cagggtgctg caaatataga       540
     cggtgcacaa cgtcatggag ccataatggg cgctccgcat gctttgggtg gcacacaggg       600
     tgctgcaaat atagacggtg cacaacgtca tggagccata atgggcgctc cgcatgcttt       660
     gggcggcaca cagggtgctg caaacttgga cggtgcacaa cgtcatggag ccataatggg       720
     agctccgcat gctttgggcg gcacacaggg tgctgcaaat atagacggtg cacaacgtca       780
     tggagccata atgggcgctc cgcatgcttt gggcggcaca cagggtgctg caaatatgga       840
     cggtgcacaa cgtcatggag ccataatggg mgctccgcat gctttgggcg gcacacaggg       900
     tgctgcaaat atagacggtg cacaacgtca tggagccata atgggcgctc cgcatgcttt       960
     gggcggcaca cagggtgctg caaacttgga cggtgcacaa cgtcatggag ccataatggg      1020
     agctccgcat gctttgggtg gcacacaggg tgctgcaaat ttagacggtg ccacaacgtc      1080
     atggagccat aatgggcgct ccgcatgctt cgagtggcag cacagggtgc taccgatgat      1140
     ggtgctacac aaaacaaaat gccatttaaa actacaaccg gaatatctgg tgtctacgaa      1200
     cctttcccca ttaatgttgg tacgggtgag tctggtaatg ttacgggttg cgttcgggtt      1260
     ggtcaggcta gtcagggaca atacccacat aattatatgt cggggcacag aattatggat      1320
     ctgccagaat ttagtggtag ggcagaagat tggccagtat ttattacaat gttcatagaa      1380
     tcctccgctg cttatggtta tacccaactg gaaaatgtaa tacgtttaca gaaaagctta      1440
     aagggagcgg caaaagagga ggtaaaaggg ctattagtga atccggcaaa cgtgccacat      1500
     attatcgagc acctacagtt tatgtacgga agaccagagt tgcttattaa aagtcagcta      1560
     gaaatggtca atgatatacc ccaaatccca gagaataatc tagaaaggat gattccattt      1620
     gccacaaagg taaaaaattt ggtcatattt ttgcaatctt caaatgcagt attacacctg      1680
     caaaatccat ctttgctgga tcaattagtt tcaaaaatgc caatgtcaaa acgcatgcag      1740
     tggcaagagt tttcatctca aatatatcca tacgccaatt tgatggattt tagtaaktgg      1800
     ttaaatagta tagcaagaac gattgcgaag gtaacattaa tgacaacttc gaacaggccc      1860
     acttcaaaag gtgattgtcg tcacaatcca aaactggtaa tgcaaacaaa tactggcgaa      1920
     tatcaaaaga aggataagaa atatacaaaa gtttgcaccg aatgtaatgg tgaccactct      1980
     ttgtctgaat gcgatgtata tgtaaaggct gatgtaaatg aaaagtggaa catggtcaag      2040
     aaattagggg tttgtttcag ctgtctaaaa cgcaaccaca atatgatatc ctgtaagttc      2100
     aaacgaagat gtaacatcag tggctgcaag agttcacatc acaaatcgtt gcacaatcct      2160
     aatagacaga cggtagaaga agataaagca gaagcagcga cacatacagt caaatccagc      2220
     atgaaaaggt tgttagttaa agtcctgcca gtcgaaataa tgggcccgca gaatacatta      2280
     gttaaaacgt tcgcgttttt ggacgagggt tccaacgtaa cgttaattaa cgagaattta      2340
     gctaaaaagc taggggtaaa agaaaacatg gatcggttaa cattaaattg gattaagaat      2400
     catgccatta acttgaatac gacagtatgt catctaaaaa taagaggtat taatggaaat      2460
     aaaaattggt tacagttaaa aggcactaca atccctgatc tggaattacc tctacaatca      2520
     atggatcatc aaacattagc ggaagagtat attcgagttg cgaacctccc aatagcaagt      2580
     tacacagatg ccaaaccaac aatactgatc ggcatagata atacccacct ggtcaagact      2640
     atacgaagcg ttgatatcgg tccaagacta gtggcatcaa aaacaccttt gggatgggtg      2700
     atttttggat caagagcaga ccattctaat acaagcccgt tagtgacatc agtatttcat      2760
     gcgaattctt tggaggatca aatgaacagg gaaatgcacg atttgatggc agattatttc      2820
     acaactgaga attttggagt acggccgtat attaagtctg tagagtccgc tgacataatt      2880
     cgagctaaag agatacttca aaacacaaca gtaaaattag aaggagaata tgaaaccgga      2940
     ttgttatggt caaaagaaac attaaatctt cccgacagtt acagtatggc tttgaaaaga      3000
     ctccaattaa tagagcataa aattattcgc tcaaatagcg taaagaccta cgatgaagcc      3060
     attatggact ttgtgaagaa aggatatgcc gtcaaaatga caaaacttca aacttgtgta      3120
     accagttcta agacatggta tctacctcat ttcgccgttt acaacgtgaa caaaccagga      3180
     aagctacgac tagtattcga cgcagcagcc tcaatcgaag aagtttcatt gaattcaaga      3240
     ttattaaaag gacccgatga aaatccgcca ttgactcaaa ttttattcca atttcgacaa      3300
     ggagcagtgg cagtttgtgc agatatcaag gaaatgttct tgcaggtgcg agttcgacag      3360
     gaagatcagg attgcttacg gtttttatgg agacatggtg acacaacaag agaagtcgat      3420
     acttataaga tgacggtcat gatattcgga gccacttgtt ctccgtgttg tgctcaatat      3480
     gtaaaaaata taaacgcgca aaacagtacg agttcaaagg aagtaattga tgcaatacaa      3540
     aataatcatt acgttgatga ctttgtagca agctttgtat ctgagcaaaa ggcatacgac      3600
     ataagctctg aagtaaaaag ggtgcatgaa ttagctcact ttgaactaag aggctttgtt      3660
     tcaaactcga agtgggtaca aaacaaattg aataaagaag agaaaaataa aactgataag      3720
     ttaccagtaa gtatggataa gaaggctgtc gataaggtat tgggcatgta ttggtacaac      3780
     gacatagacc aatttacttt tgacttaaaa atgaatcgcg tggaacaaag catacttaaa      3840
     gctgaaaatt gtccaacaaa gaggcagctt ctaagcttgg tcatgtctat ctatgatcca      3900
     ttagggatgt tagccgacct gacgattcat ggaaaaatat tgattcagga tgtctggagg      3960
     tcaggcattc actggaatga tttgatccca gaagaattat ttattcgttt caaaaattgg      4020
     gtcttacaaa tcgaaaatgt aaagagtttt agattaaaca gatgttactc tcgaaatttt      4080
     atgtcatctc aagctaacat agaattgcat atttttgtag atgctagtga acaagccttt      4140
     gctgccgttg gttattggag aataatactt gatggactta tcgaaacaat tttcgtcgcg      4200
     ggaaaaacta gatgcgcacc aataaagact ttatctgttc cccgattaga gcttcaggca      4260
     gcggttttag gtacccgact taagactctg atactggaaa gtcattctgt taacgtacag      4320
     aaatatacat tatggtcgga ttcaaagact gtcatagctt ggattcaatc agatcatcgg      4380
     aaatataaac aatttgtggc tcaccgtata aatgaaatac tggaaacaac aaacgaaaat      4440
     gattggcgat gggttccaac acatttaaat gctgccgata aagccacgag aacaaaggta      4500
     aaaattaagt acgagccagg taatatttgg acaagaggcc ccgaattttt attgaaggat      4560
     gaatctagct ggccagtaca ggaaaagatc tacgttgaaa acgattcctc tgaagtaaaa      4620
     cgggtatatt taacaacttc tgttgaaaat attattgacc taaacagatt ttctaagtat      4680
     ttgaaactga agcgaacaat gggatggata ttgagattta aacaacggat attgaaacgt      4740
     caatgtgata atgatgtaac aacactttct tcgcgggaat tgcaagatgc agaaaataca      4800
     ttagtaaaaa tcatgcaaaa ggaaatctat cataaggaac tagctgattt acaagcaaat      4860
     tcatgcgtat caaatgaaag tagcatcttc tctttaactc ctacgatgaa tgccgacggg      4920
     atcttagtgg tcaacggtag gcttgactat gcaacatcac tatcgcaaag tgctcgtcaa      4980
     cctatcatat tacccaaaaa acacaaacta actgatttaa tagtaacatc gtatcacgag      5040
     agattccacc atcaaaacga tgaactcatt atcactgaga ttcgtcaaaa attttggata      5100
     atatgcttgc gagctgctgt aaaaagggca aaaacagttt gccagttttg taaaaataga      5160
     aaaattcaac cgcaagcgac tctgatgggt cagttaccga ccgatcgtgt cactccttac      5220
     caaagaccgt tttcctatgt aggacttgac tattttgggc cagttactgt aacgatcggc      5280
     cgtcgacatg aaaagcgatg ggtggctcta tttacgtgcc ttaccatacg agctatacac      5340
     ttggaattag cagcggattt gtctacagac gcatgtattt tatgtattcg aaacttcgta      5400
     aacaggcgtg gtataccaat cagaatacgg tcggatatgg gaacaaattt tgttggagct      5460
     gatcgtctaa taagggaagt caaagaccta tttgactgga actacatcgc tgaagagatg      5520
     gcaaataaag gcatagaatg gaagttcaat tgtccagcaa acccaagttc aggaggatgt      5580
     tgggaacgcc tagttcagtc agttaaaaag gttttggtaa taacattgca agacaaggcg      5640
     ccccaggttg aaacacttag aagtttgctt atcgaagcgg aaaatatcat aaatagcaga      5700
     ccacttacac acattccagt ggataaagac gatccaggtc cattaacacc taatcatttc      5760
     ttgcttggca caaccaattc gacacaaacc cctggagagg aagacaactt ttgtcatcga      5820
     aaacaatata ggatttgtca acaattaaaa aatacgtttt ggaaacgatg gataagggaa      5880
     tatctaccaa ctctgacaaa gcgaacaaag tggttcgcac cgattcgacc catcaagatg      5940
     ggagacttag tcataatatg tgacgaaaac caaccaaggg caagctggaa aaggggaatc      6000
     atcgtgaaag ttattccagc aagagatggg ctaatacgag ttgctgaagt acaaacaaat      6060
     gccggaattt taaaacgacc agtgtctaag cttgctgtat tagacgtttt gggtaaaact      6120
     cccgagtagt tttacggtag gcggga                                           6146
//
ID   BEL-8_DWil-LTR repbase;    DNA;    INV; 415 BP.
XX
AC   scaffold_181123;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_DWil_;
KW   BEL-8_DWil-I; BEL-8_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-415
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181123; Positions   84084   83670.
XX
SQ   Sequence 415 BP; 132 A; 72 C; 87 G; 124 T; 0 other;
     tgttgtggag gcggtacgtt actgccaatg ccctgaattt aggtagccct gatcgttttc        60
     cctttagact tagtatgtat cgacctgaat gcaaccctga cttatcgagg cagaaaccag       120
     ctctaagaag tgagacgagg cgtcagtata gaagaaaatt gcacaggaac gatacgttaa       180
     aataaacatc cgataattgg cacgaaacga agctcgaggc taggagcctt agggcttaat       240
     atatatggat aaactttata atttgttgta tctaagaaac accatcataa ttattctata       300
     ctcagtttgt aataaataag tttaaaatca attcgtgcta aatgttctat ttttgtatcg       360
     gtaaaatttt cgggcgttaa agtaacgcgt ggtcgagaca ttcttgacgt taaca            415
//
ID   BEL-8_FoCa-I repbase;    DNA;    INV; 3066 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-8_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3066
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2589-2589 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           550..2976
FT                 /product="BEL-8_FoCa-I_1p"
FT                 /note="DUF1759 and retropepsin (including a stop
FT                 codon)."
FT                 /translation="DNSMDRLKKARAPARASITKTVDGVVAELAKDPKDSR
FT                 ELTIKLRKLESLQTSIREHDEKVLTQMFDDNCTAESYGEESAVNEEYSDRI
FT                 RVSIMDIEKILNAEIRPPSPSASSSYVTVNGERIKKNRNFKLPKIELQKFD
FT                 GSWKSWLGWWAQYRQIHEDDELQVNVKFQYLIQAIVPGSEAEKVIKIYPRS
FT                 DQNYPLVVEKLKSRFGDEKILRQIYI*ELLGLAINSAADSREDADVEELHD
FT                 QLEGHLKSLESLGKVSNPSELIYPLVESSLPQQVLLRWQNSNLRVREKKSD
FT                 LSSATNLENLMEFLRLEAQNAKERKFVLSTFRQSPVKNREKVNVYAESECE
FT                 DFSTAAGLYSSHQAEQRCVFCGKSNHKSQMCYKAQTLPLEEKKILVKENRG
FT                 CFICLGRGHYANDCTKEVSCQICGRKHYSVMCPGQVRDEEVTSINEDESSS
FT                 SSVEETTTNFSQGCPSKVVLMKTLRVMVNGASGVKKEVRLLFDEGSQRSYI
FT                 RTKTAQELKCQVVDKLTLQNSLFGGHVTSTEEKNCYRVTTSGIDRKDCARM
FT                 NLQLVNEDFICGACPEIPPGPWCKELARKKIHTTDTSASEVDILIGSDLWG
FT                 SLMTGRMVKLGCGFIAVESVFGWTISGVVLGVNNCKLNYAGVVISSSRRKS
FT                 FVEKRTQEEQQRVEKTTQDKRVKVDELRRWERSVVGVPRIG*PAMRGCGLG
FT                 NGNSHTPKTSRLLSTARVPGLVSDKYRNKVSCGKMEACNPIGFNRPAIIKP
FT                 KMLVQKVVEKNAEWWERPNTRIPRRCQEKKQVQKEPEVGGKDQDRISKKPG
FT                 RYPKWNL"
XX
SQ   Sequence 3066 BP; 895 A; 533 C; 877 G; 761 T; 0 other;
     ttagtggtga cctcgacgtg attgctcgtt gggtcagttt tagttggaag tggactagtt        60
     atagtggtca gtgagttgtg accttttgag tgaattagtg tacgtgcaaa gactgttccg       120
     tggaaatcct gtgcaagtgt tgctgtctgg acgaggagca gatcgaattg gtgtacgtgc       180
     aaaaagtgtt ccgtggaaat cctgggcgat tgttgctgtc tggacgagga gcagattcga       240
     aggagaggat tcacatcaag ccttgcctca ttgaggaccc gaccctgagt attcgggggc       300
     tgttcaggtg atacctttca agttttattt tgttgctgtg aagtagtccg tgaggaagga       360
     gtgaccgacc agattgacat cggcgtgtcc gaccgagagg aacttcaact ttattcgtct       420
     attaatcaat tactgtcttg cctcgttgag ggccccatcc tgagcgttcg ggagccatag       480
     aggtcggcat tgttgctgat tgagttaata agcgtgtact gttctaattg ttttgtttgt       540
     tggatttgag ataacagcat ggatcgactg aagaaggcga gggctccagc tcgagcttcc       600
     attaccaaga cggtggatgg tgtagttgct gagttggcga aagatccaaa ggactcgaga       660
     gaacttacca tcaagttaag gaagttggaa tccctgcaga cgtcgatcag agaacatgat       720
     gaaaaggtgc ttacccagat gtttgatgac aattgcacgg cggagtctta tggggaggag       780
     agtgcagtga atgaagaata ttcagataga atcagagttt ctatcatgga tattgagaag       840
     attcttaatg cagaaatccg tccaccaagt ccgagtgcaa gtagcagcta tgtcaccgtg       900
     aatggggagc gtatcaagaa gaatagaaac ttcaaactgc ccaagatcga gctacagaaa       960
     ttcgatggga gttggaagag ctggttgggg tggtgggctc aataccgtca gattcacgaa      1020
     gatgatgaat tgcaagtaaa cgtgaagttt cagtatttga ttcaagccat cgtccccgga      1080
     tcagaagcag aaaaagtgat caagatttat ccacggtcgg atcagaatta tcctttggtg      1140
     gttgagaagc tgaagtcccg gtttggtgat gagaagattt tacgccaaat ttatatctga      1200
     gaattgttgg gcctggctat caatagcgcc gcggattcaa gagaagatgc cgacgtggaa      1260
     gaattgcatg accagttgga aggtcatttg aagagtctcg agtctttggg gaaagttagt      1320
     aatccaagtg aactcattta tccattagtg gaatccagtc tgccacagca agtgttactc      1380
     aggtggcaga atagtaattt gagggtacgc gagaagaaat cagacttgtc ttctgctacc      1440
     aatttagaaa acctgatgga gtttttgcgg ctggaggcac agaatgccaa agaaaggaaa      1500
     tttgtgctgt caaccttcag gcaaagtcca gtcaagaata gagagaaagt aaacgtgtat      1560
     gcagagagtg aatgtgaaga tttctctact gctgccggtc tctattcaag tcatcaagct      1620
     gagcagcgat gtgtcttttg tggaaagtcg aatcacaaaa gtcagatgtg ctataaggct      1680
     cagacattac ctctcgagga gaagaagatc ctggtgaagg agaatcgggg atgcttcatc      1740
     tgcctgggaa gaggacatta tgcaaatgac tgtaccaagg aggtcagttg ccaaatatgt      1800
     ggacggaaac actactctgt gatgtgtcct ggtcaggtcc gagatgagga agtgacgtca      1860
     attaatgaag atgaatcaag tagcagttcg gtggaagaaa ccaccactaa cttcagtcag      1920
     ggatgcccaa gcaaagtggt actgatgaag acgctccgtg ttatggtaaa cggagcaagt      1980
     ggagtcaaga aagaagtccg actacttttc gacgagggaa gtcagaggtc atacataagg      2040
     acgaagacgg cccaggagtt gaaatgtcaa gtagtggaca agttgactct tcagaatagc      2100
     ttattcggtg gacatgtgac tagcaccgaa gaaaagaatt gttaccgggt cactaccagc      2160
     ggtatcgata ggaaggattg tgcgaggatg aatctccagt tagtcaacga ggactttatt      2220
     tgtggagcat gcccagaaat cccacctggc ccttggtgta aagagttggc tcggaaaaag      2280
     atccacacga cagacacttc agcgtcggaa gtcgacatat tgataggaag cgatctgtgg      2340
     ggaagtttga tgaccggaag aatggtcaaa cttggttgtg gatttatcgc cgtggaatcc      2400
     gtgtttggat ggactatcag cggagtggtt ctaggtgtca acaattgcaa gttgaattac      2460
     gctggtgtcg taattagttc aagtagaagg aagagctttg tagagaaaag aactcaagag      2520
     gagcaacaac gagtcgagaa gactactcaa gataaacgtg taaaggtcga cgagttgaga      2580
     cggtgggagc gaagtgttgt gggggttccc agaatcggct agcctgccat gagggggtgc      2640
     ggattgggaa acggcaacag ccacactcca aagacgtcaa gattactctc gacagcaagg      2700
     gtacctggtc tagtcagtga caagtaccga aataaagtgt cgtgtgggaa gatggaagct      2760
     tgtaacccca tcggattcaa tcgtccagcc attattaagc cgaagatgct ggtgcagaaa      2820
     gtggtggaga agaatgccga atggtgggag cgaccgaata caaggattcc aagaagatgt      2880
     caagagaaga agcaagtcca gaaggagccg gaagttggtg gtaaagatca agataggatc      2940
     tcgaagaaac cagggcggta tccgaagtgg aatttgtaat ttaattgtat agtataattt      3000
     gaatttgata ttgcataatg tgtttttaga atagttcttt tgctctcaca aaagaaggtg      3060
     ggagta                                                                 3066
//
ID   BEL-8_FoCa-LTR repbase;    DNA;    INV; 505 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-505
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2562-2562 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 505 BP; 151 A; 63 C; 110 G; 181 T; 0 other;
     tgttaaatgt aaaatgatgt atttatgaaa ttgttttatg tatttttgta aattgttgaa        60
     tatgcgtgta agattgcccc gtgacgtggt ggtggttgcc atggtgacgt cagagtggga       120
     ttttgagtgc gcgtcgttct ttgttataag tcgtagtaag taagtaggta gaagaattct       180
     acacagtcga gttttagtcg ttgtcaaagt cagacatttt ggattttagt cgtcgtggta       240
     ggaaatcaag agtaagaatt gttaattctt tgtaattgat gtccacgatt aatttgttaa       300
     tagtaagtca ccaatcaact cgtgttagtg cagagctctg aattgtgttg acaatttgat       360
     aatttgttga aaataaaatc cagtttaagt agataaaata atcgtatatt cactcaagtc       420
     actttcttta attccatcga gcaaagcaca attaaatata cgtaaagaca ctatactccg       480
     ggtaggtgat agcttggttt ttaca                                             505
//
ID   BEL-8_LH-I  repbase;    DNA;    INV; 5619 BP.
XX
AC   ADOQ01011062;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_LH_;
KW   BEL-8_LH-LTR; BEL-8_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5619
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011062; Positions   13519   19137.
XX
CC   Positions [4642-5226] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2237..4456
FT                 /product="BEL-8_LH-I_3p"
FT                 /translation="MDIELNQILVRFWETEEVPMKPSFTADKEKCENHFRT
FT                 THARRESGRYIVRLPFKQFPPHIGDLRCIATRLYDKLERRLSRDANLAASY
FT                 NAFLQEYLDLGHMELVTGPESSHDTVVYLPHHPVVKSKSLSTKLRVVFNAS
FT                 CATSNKTSLNDHLHTGSKLQTDLMSILIRWRQHKYVYLADIKKMFRQIMMH
FT                 PEDADYQRILWRPSSQSSIQSYRLRTVTYGTAPAPYLAIRVLHQLVEDEGH
FT                 QFPLARSILLHETYVDDILFGAGDIDTANAMRVQLVNMLAAGGFCLRKWAA
FT                 NATEMLEDVPPNDRAINMDHSLEEDNNIKVLGISWLPRNDSFSFHISLLPT
FT                 AVATKRSILSAIARIFDPLGWATPVVIIAKSLMQELWIRTCGWDEPLPADL
FT                 STRWETYRDSLRSLTEVRIPRWTGQSKHVSSIEYYGFSDASLKSISAVVYM
FT                 RITCSNDVEVMLIAAKSKVAPIKTLSVPRLELNGAVLLVKLLQYVIETMQL
FT                 SSIPTYCWTDSTIVLKWLKKHPSTWVTFVANRVSKIQTELPSATWCHVPTG
FT                 SNPADIASRGITPADLSSCKLWWSGPTWLTQSSKLWPRQTPKSFDEITRGV
FT                 NTETCKAAVAHINDMPQPLALDDLPHRLSSWTRLLRVTAYVLRFIACARSK
FT                 RSSTAGTDSRLTAAELSEARIDWCKQAQLSLFASEYKKLRRKQPISSRSPL
FT                 IKLTPFLDENDTIRLGGRLKNAPLAFFERQLFCLVIVSVT"
FT   CDS           4624..5568
FT                 /product="BEL-8_LH-I_1p"
FT                 /translation="MGSLPASRVSPSRSFTHTGIDYAGPFAVLWKKGRGQH
FT                 SHKAYVSIFVCLATRAIHLELVSDLSTEAFLTAFKRFVSRRGIPNNVYSDN
FT                 GTNFQGAERELANTFRNIVKDSDFGLLLAIDGTTWHFVPPAAPHFGGIWEA
FT                 GVKSMKHHLRRIVGKHTLSTEEFSTLLCQVEACLNSRPISTMTNDPDDFTT
FT                 LTPGHFLIGAPLLTVPEESVMDVQENRLSRYQRVRSMLKHFWNAWSCDYLH
FT                 TLQQRPKWMCSLPDIKPGELVLLRNNLLPPSKWALVRVISTQPGDDGHVRI
FT                 VSVKTKDSEFVRLISQIFRLSID"
XX
SQ   Sequence 5619 BP; 1476 A; 1437 C; 1260 G; 1446 T; 0 other;
     agatcggagg tgtcgctact tttaatggtc cttcgagccg gattcagcgg gtggacgtcg        60
     aaaagagtcg tgactttctc agtgcacatt agcgaacatt gacattccat tgagtgcttg       120
     cgcgccgtgt atttggcgcg taggattaca aaaagcagtg ataattatac tgcgcaacaa       180
     cacgcgttta agtgccgggt tgagcgacct tgagaataat ttcacgcgaa taacctgctc       240
     ttgtcgcgca tgcattcctt cgcaagtaaa taagttgtcg tgattgacgc gaacgaccta       300
     tatacacggt ggacatttag tgccgtacag tcagtgaact ttagtgttta ttcattatgg       360
     cgacgctcaa aaagctgatc acgcagcaag acgttcttat cggacaaatc tctcgttcgg       420
     taacaaattt gaaaaaactc ggtgcgagca atctcacggc cgccaaggtg aagcatcgtc       480
     tcgatgcctt ggagaagctg tgggagaaga ctcagctcgt ccacatacaa ctccttcaag       540
     ggacttccaa ggaagaaaga gagcagatgg actatttaaa cgaggtacat tccttcttgc       600
     tgaggcggag tatctcgacg cttccgacta catggccgat ttcatcgaga cgctctccga       660
     aaagccctcc atcccgggac actcaggtga caccagctca gttaacacgg cagttgcaaa       720
     caattccgcg atgaaactct gccgtatcga actccccgaa ttttccggtg atcgtttaaa       780
     gtggactcat tttcatgaca tgttcgagac tcttgtgata aataattcgt cactaaataa       840
     tgtcacgcgg ttgcattatt tagtgtccaa acttaagggc gatgttgccg ctttattgcg       900
     caattttaaa atcaccgaag ataatttcga gcccgcatgg aaggccttga cgagcgaata       960
     tgcgaataca cgtctaatta ttaattctca tttgcaagcg atcgttgact taccgattgt      1020
     aaaaaccgaa tcagctagcg cgcttcgaaa tctacgcaat gtaacaaaat cagcgattga      1080
     ggcgttgtca aatctcgggc gttctgtcga taaatggagc gatcctttga tttttatact      1140
     tattactata tttattacta aaaaattgct tcctcgcact cgtcaggagt ggcaaatgga      1200
     attgggggat tcgtacgatc ctcctgaact agacacgttt ctaaagttta tttcaaagcg      1260
     aattagaggt ctcgacgacg ataatccttc gattgcgagc gatactgtat ccggaagtcg      1320
     tgtaactgca aagcgaaaat tcatactgcg aataacgcgt ccgtacaaga tttccgtaaa      1380
     tgcccgactt gctcggaaaa gcatttactc tatcaatgca atcaattcgt ccccttggac      1440
     attaatcaac gtttcgccct agcgaaaaaa attaaaatgt tgtatgaatg cgactcggtt      1500
     attccgccag tgcgtgtaaa aatccacaga aatgttttaa atgcgacaaa gcgcatcata      1560
     cgtatttaca ccgcaataac aagactaatg agagagcgcc gtcttccgac catcactctg      1620
     ctgacgcaag cgccgcgaaa acacaagctg ccagtccgtc agtgctcact gcgtcaccgt      1680
     gtcgaaaaat tctaccgtgc tactcgccac cgcgtgggtg aatttgcgta cctacgaaaa      1740
     tcgaatagta cgagtacgcg cgttactcga ccaaggagct actcatacgt ttatcacgga      1800
     gacattggct caatcgctgc acacatcccg ccaacggacg actttgcccg tgacgtgttt      1860
     tggcgcccaa tattccggca cggcgaaaac gatgatacga ctttcgctcg agccgtgcac      1920
     aacaaacgac atttctctcc cagtcacggc ctacgtgttt aatcggataa cattatacgg      1980
     tacctcgaag cgcagcccgg tctctggctg gccgcattta caaggacttg acctagccga      2040
     tactgatctc accgattgaa ctccgataca aatattaatt ggagcggatc tatacggagc      2100
     cacattacta gatggatttc gaaaaggtcc gttcgacagt cccacggccc agtcaacgat      2160
     ctttggttgg attgtcactg gccctactcg cgatatcgat tccaatgcat cagcttgcgt      2220
     agcgacagtc aataccatgg acattgagct caaccaaatt ctcgtgcgat tctgggagac      2280
     tgaagaggtt cccatgaaac caagctttac cgcggacaag gagaaatgcg agaatcattt      2340
     ccgtaccact cacgcaagaa gggagagcgg gcgatacatt gttcgccttc cctttaaaca      2400
     atttcctcca catattggag atttacgctg catcgcgact cgattgtacg acaaactcga      2460
     gaggcggcta tcgcgcgatg ctaatctcgc tgcgtcatac aatgcgtttc ttcaggagta      2520
     cctagacttg ggacatatgg agctggtcac cggtccagag tcgtctcacg acaccgtcgt      2580
     ctacctaccg catcaccccg tggtgaagag caaaagtttg tcgactaaat tgagggtcgt      2640
     atttaacgcg tcgtgtgcta catcgaataa aacttccctt aatgaccatc ttcataccgg      2700
     gtccaagcta cagactgatc tgatgtctat actaatcaga tggagacaac ataaatacgt      2760
     atatcttgcc gacattaaga aaatgtttag gcagataatg atgcatcccg aagacgccga      2820
     ttaccaacgc attctgtggc gaccgtcgtc gcaatcgtcc atccagtcgt atcgtctacg      2880
     taccgttacg tatggtacag ctcccgcgcc atacctcgcg atacgggtat tacaccaact      2940
     tgtcgaagat gaaggccatc aatttcctct tgcacgttcc attctactac acgagactta      3000
     tgtcgatgac attttatttg gtgccggcga tattgatacg gccaatgcaa tgagagttca      3060
     attagtcaat atgctcgcgg cgggcggatt ctgtctgcga aaatgggcgg ccaacgctac      3120
     cgaaatgctc gaagatgtac cgcctaatga tcgagctatc aacatggatc actccttaga      3180
     agaggataac aacatcaaag ttctcggcat ttcatggttg ccacgaaatg attccttctc      3240
     cttccatatt tcgctcctgc ccactgcggt agcgaccaaa cgctcgattc tttcggccat      3300
     agccagaatt ttcgaccccc ttggatgggc tacgccggta gtcattattg ctaagagcct      3360
     gatgcaagaa ttgtggatta ggacatgcgg ctgggatgag ccgcttccag cagatctcag      3420
     cacacgttgg gaaacttatc gcgattctct ccggtctctc accgaagttc ggataccccg      3480
     ctggaccgga caatccaaac atgtgagcag tatcgaatat tacggttttt ccgacgcctc      3540
     acttaaatct ataagtgccg tggtgtatat gagaattacc tgttcaaatg acgtcgaggt      3600
     tatgcttatc gcagccaaat ctaaagtggc gccaattaaa actctgtctg tcccgcgttt      3660
     ggagttaaac ggtgccgtat tactcgtcaa attgctacaa tacgttattg aaacaatgca      3720
     gctctctagt attccaacct attgctggac tgattcgaca atcgttctca aatggcttaa      3780
     aaaacatccc tccacgtggg ttacgtttgt agcaaatcga gtgtcgaaaa ttcaaacaga      3840
     actaccgtca gctacttggt gtcacgttcc gactggctcg aatcccgcgg atattgcatc      3900
     ccgcggcatc actccggctg atctatcgtc ctgcaaacta tggtggtcgg gcccgacttg      3960
     gttgacacag tcgtcgaagt tatggccccg tcagactccc aagagttttg acgaaattac      4020
     ccgtggtgtc aacaccgaaa cttgcaaggc tgctgtcgca catatcaacg acatgccgca      4080
     accgcttgcg ctcgatgatc ttcctcatcg gctatcatca tggacgcgcc tacttcgagt      4140
     gaccgcatat gtccttcgat ttatcgcttg tgcacgatcg aaacggtcaa gtaccgcggg      4200
     aaccgattct cgccttaccg ccgctgaatt gtccgaagca cgcatcgatt ggtgcaaaca      4260
     agctcagctc agtcttttcg cctcagaata taagaagcta cgtcgaaagc aacctatatc      4320
     atctcgaagt cctctaataa aattaacgcc attcctcgac gaaaacgata cgatccggct      4380
     cggcgggcgg ctaaaaaatg cccctctcgc atttttcgag cgacaattat tttgcctcgt      4440
     catcgtatca gtgacttgat catcgatcat gcccacaaac acacgttaca tggagggcca      4500
     cagttgacta tcaggttcat ccgacagaac tattggatta tcggcgcaag aaacttagtc      4560
     aagtcggcta ttcatcgctg tgtcccgtgc gctcgccaac gagcgttaat tccgacgcaa      4620
     attatgggaa gtcttccagc ttcacgtgtc tcgccatctc gctcgttcac acacacgggc      4680
     attgactatg cgggaccatt tgccgtttta tggaaaaagg ggagaggaca acattcacac      4740
     aaggcttacg tgtccatatt cgtttgcttg gcgacccgcg ctatacacct tgagttagtc      4800
     tccgacttat ctaccgaggc ttttctcaca gcatttaaac gctttgtctc gcgtcgcggc      4860
     atccccaaca atgtctacag tgacaacggg accaactttc aaggagcaga gagagaattg      4920
     gcaaatacat tccggaatat cgtcaaagat tcggatttcg gcttgctttt agcgatcgat      4980
     ggaactacgt ggcactttgt tccccccgct gcgccccact tcggcggtat ttgggaggcg      5040
     ggggtgaaga gcatgaaaca ccatttaagg cgcattgtgg gcaagcatac gctatcgaca      5100
     gaagaatttt ccacccttct ctgtcaagta gaggcatgct tgaattcgcg accgatttct      5160
     accatgacta acgatcccga tgattttacg acgcttactc cagggcactt cctcattgga      5220
     gcccctctcc tcaccgttcc cgaagaatca gtaatggacg tacaagaaaa tcgcctttcc      5280
     cgctatcaac gtgttcgttc gatgctcaaa catttttgga acgcgtggtc ctgcgactac      5340
     ctgcacacct tacagcaacg gcccaaatgg atgtgctcgc tcccggatat taaaccagga      5400
     gaactcgtgc tcttacgaaa taatttgtta ccgccatcca aatgggctct tgtgcgtgtt      5460
     atctctacgc aacccggcga cgatggacat gtccgtattg ttagtgtaaa aactaaagat      5520
     tctgagttcg tgagattaat ctcgcaaatt tttcgtcttt cgatagattg agacaaggga      5580
     aatctttatc gtaccgtttc ggatacgagg cgggcggca                             5619
//
ID   BEL-8_LH-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   ADOQ01011062;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_LH_;
KW   BEL-8_LH-I; BEL-8_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-435
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011062; Positions   13084   13518.
XX
SQ   Sequence 435 BP; 120 A; 86 C; 99 G; 130 T; 0 other;
     tgttcaggca ggcataaatg tacgagatat tatatttaat atgatgaaga gcgattgaat        60
     caacggccct gtcttgtgac agtcgcgtga tcggttgttt tggaatcgct accacgtgct       120
     aagatcgtga ttttttcggc gcgcgcgccc gtggtctgac gacggaaaaa ctcgaatttt       180
     tttttgtttg cttgacgatc gggagtaaga cggcctttta gcagtcaatc gagtcgatct       240
     cgctgtatcg aacatttgta ttccgctccc gagagtctaa actaaaactt catcaataga       300
     tgtaagagtg agtaaattag caataaattc tgttgtgtgg ttgactttac aattctaatc       360
     agcgtgatta tttccaactc cttgcgacgt cccaaaaccc gcgccaaaaa aaaaatatat       420
     ttgagtggag cgaca                                                        435
//
ID   BEL-8_MoPha-I repbase;    DNA;    INV; 5568 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5568
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1135-1135 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           96..5360
FT                 /product="BEL-8_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADILERQRTIQRMIERALENFKKIGKGNLTTAKIRS
FT                 RILLLKDNWSQFVTGHAALKEAIPKVKREEFPYFSEDHFERAQDAYLTALD
FT                 YMADCLEELEPTVSPNHSSTFYVDRRQDAPADAPATASAFSLQHLPPIQLP
FT                 PFDGKPDEWAQFRDRFTTLIRDNKDLNDFARMHFLSSCLKGRAAECITHLP
FT                 ITAENFELAWAALTSRYENKRRTLNIHLSALLGLPSVPRESASELQSLHDK
FT                 VAAALKSFSNLDRNTDNLWNDMLVYLVTQKLDPITRKAWNLQESGRDDPPT
FT                 YDDLKRFLEHRIRGLENNAIGAPVKPGAKTAPSDRVHAATASANVPPKCPL
FT                 CDTPHYLNSCVKFREKNPNQRREMVKQQKRCFNCLSEKHTVMSCKSKFSCR
FT                 VCKKRHHSLLHLDSDSSSIALEAASPSCSSSVAPAEKTEVNSLTASTAPRR
FT                 RTHVLLATAWVTVRTPSGRTAVVRALLDQGSEMTFISESLAQLLRAKRRRM
FT                 PISVTAVGGIHAGTFKHATQIFISPRNASAPAYSTDALILGSLTTYVPKRG
FT                 VDISAFTHLSDLSWADPDPTSFDPISIIIGADLYSTLLLGGVRKGDVGQPI
FT                 AQNSVLGWIISGPIDFPAARSPSHSSIQSSHASISTHQISCSPALEDELRR
FT                 FWEVEELPRQSILSPQERQCETHFRETHSRNSDGRYIVRLPFKSPPPLDIG
FT                 ASRLQAERMLNTLTRRFKNNSALAIEYRKFLAEYERLDHMRPSPQPQSETM
FT                 QCVYIPHHGVIRENNATTPLRVVFNASSATSNGSSLNDHLLAGPKLQTDIT
FT                 SILLQWRRHRFVYSSDIAKMYRQIRVDQRDLNYQRILWNATPHEPPTDYQL
FT                 LTVTYGMSCAPFLALRVLKQLVDDEGHRFPLAVSILRENIYIDDILFGADN
FT                 AEFIRQARDHVIAILKCGGFDLRKWASNSPALLADLDPATLSSAGKKPFSP
FT                 DEQIKVLGIGWNPTTDIFEFSVALSSPVPSSKRTILSAIAKLYDPLGWVTP
FT                 VIITAKILMQQLWRQKLDWDDTLPPTLLSRWEDIYSRFGHLKNLQISRWCG
FT                 LGSDVESAEIHGFADASNTAYAAAVYLKVVSSGQTTISLLVGKSKVAPLKP
FT                 LSVPRLELSAALLLSRLVNFVRESPGYSNLPYFCWTDSTIVLAWVTQHPSR
FT                 WKTFVANRVNEIQSRLPNGKWQHVSTEDNPADCASRGLLGNEIVSHDLWWH
FT                 GPSWLRLDAPAWPCSDARLPPQAPLEEKVIALQCSPPNDTWDLPTRYSSWP
FT                 KLIRVTAYILKFVRLCRRSCSNDNSLSSSSQPLIISASECNDARIFWLKKI
FT                 QSSTFPAEIHSLANNHPLSSKCSILALRPFLDKDGILRVGGRLAKAPLSFS
FT                 VRHPILLATHPLVSLIVTQAHLRALHAGPQLTISLLRRDFWILRARNIVRS
FT                 IIHNCVVCTRERAAIPTQLMGDLPEARVSASARSFLHCGVDYAGPVQIRAS
FT                 AGRGITSRKAYIALFICLATRAIHLELVGDYSTSAFSNAFSRFCARRGLPQ
FT                 AMYSDNGTTFVGADREMTKAYRAAVRDPNFLNLTASDNITWNFIPPSAPHF
FT                 GGLWEAGVRSVKNHLRRVLGTHRLTFEEFTTLLCRIEACLNSRPIAPLSNT
FT                 LNDYECLTPGHFLVGSALIVNPEPSLLQLNENRLSRWQLVRHITERFWKLW
FT                 YNDYVTTLQQRTKWRQVQPQIQVGQLVLLRNSMLPPCKWELGRVTQCHAGS
FT                 DGLVRVVTVKTATSEYQRPIVKLCVLPIDSEASSN"
XX
SQ   Sequence 5568 BP; 1295 A; 1564 C; 1273 G; 1436 T; 0 other;
     aatttggtcc ttcgagccgg atcggagtga gttctaaatt cgcggtcacg cggaggtgat        60
     tccagtgagt tacgtgataa tccgtgtcgc tcaccatggc ggacattctt gagaggcaaa       120
     gaacgatcca gaggatgatc gaacgtgccc tcgagaactt caaaaaaatt ggaaagggca       180
     atctgaccac ggcaaagatt cgttcccgca tcctgcttct caaggacaac tggagccaat       240
     tcgtgactgg gcatgctgct ttgaaggaag cgattcccaa ggtcaaacga gaggagttcc       300
     cgtacttcag cgaggaccat ttcgagagag cccaggatgc ctacctcacc gctctggact       360
     acatggcgga ttgcttagag gagctcgagc cgactgtgag tccgaaccat tcaagtacct       420
     tctacgtcga ccgacgtcag gatgcgcccg cggatgcgcc cgcgaccgcg tccgcgttct       480
     cgttgcagca tctccctccc attcaattac cgccgttcga tggtaaaccc gacgaatggg       540
     cacagttccg cgatcggttt actacgctaa ttcgcgacaa taaagacttg aatgatttcg       600
     ctcgcatgca tttcctctcc tcgtgtttaa aaggccgcgc cgcagaatgt attacgcatc       660
     ttcctattac cgcggagaat tttgaactcg cgtgggccgc gttaacctcg cgctacgaga       720
     acaagcggcg cacacttaat attcatctct ccgctctgct cggtcttcct agcgtaccgc       780
     gtgaatcggc ttccgagtta caatctttac atgataaggt tgcggccgct ctaaaatcct       840
     tctcgaattt ggatcgcaat accgacaacc tctggaacga tatgctcgta taccttgtca       900
     cgcagaaact cgatccgatc acgcggaagg cttggaattt acaggaaagc ggtcgcgacg       960
     atccgcctac gtacgacgat cttaaacgct ttctcgaaca tcgcattcgc ggattggaaa      1020
     acaacgcaat cggcgccccc gtgaagcccg gtgcaaaaac cgctccatcc gatcgcgttc      1080
     acgctgctac cgcgtcagcg aacgtgccgc caaagtgccc gctatgcgac acgccccatt      1140
     atctaaattc ctgcgttaag ttcagggaaa agaatccgaa tcaacgtcga gaaatggtga      1200
     agcagcaaaa acgttgtttc aattgcttga gcgaaaagca tacagttatg tcgtgcaaaa      1260
     gtaaattctc atgtcgagtt tgcaagaaac ggcatcattc gcttctccat ctcgattcgg      1320
     attcttcttc catcgctctc gaagcggcgt cacctagttg ctcgtcgtcc gtcgctccag      1380
     ctgaaaaaac cgaggtgaat tctcttaccg cttcgaccgc gccgcgacgt cgaacgcatg      1440
     tactcctcgc gaccgcgtgg gtaacggtgc ggacgccgtc gggccgcacc gccgtcgtgc      1500
     gagccctgct cgaccaaggc tccgaaatga cctttatttc cgagtcattg gcgcaactcc      1560
     tgcgagcaaa acgccgtcgc atgcccatct ccgtcaccgc cgtcggtggt atacacgccg      1620
     gcacttttaa acatgcgaca cagatattta tttccccgcg taacgcttct gctccggctt      1680
     attcaactga cgcgctcatt ctcggctcgt taactactta cgttccaaag cgcggtgtag      1740
     atatttcggc gttcacgcac ctttcggatt tatcgtgggc cgacccggat ccgacaagtt      1800
     tcgatcccat cagtattatc attggggccg atctatacag tactttactt cttggcggcg      1860
     tccgcaaggg agacgtcggc cagccgatcg cccaaaattc cgttcttgga tggattattt      1920
     ccggaccgat tgattttccc gcggcgagat ccccgtcgca ctcatccata cagagctctc      1980
     acgccagtat ctccacacac caaatttcgt gttctcctgc tctcgaggat gagcttcgtc      2040
     gtttttggga agtcgaggaa cttccacgtc aatctattct ctcgccgcaa gagagacaat      2100
     gcgaaacgca tttccgagag actcattctc gcaattccga tgggcgatat atcgttcgcc      2160
     ttccgtttaa atcccctccc cctctcgata tcggagcgtc gcgtctccaa gccgagcgta      2220
     tgttaaacac gttaacgcgg cggtttaaaa acaattcggc attggcaatc gaatatcgaa      2280
     aatttctcgc ggaatatgaa cgtcttgatc acatgcgacc ttcgcctcaa ccgcagagcg      2340
     aaaccatgca gtgtgtttac attccgcatc acggggtaat ccgagaaaat aacgctacca      2400
     cccctctccg cgttgtgttc aatgcatcaa gcgccacttc caacgggtct tcgttaaatg      2460
     accatttact cgccggtccg aaattacaaa ccgacattac gtcaatttta ttgcaatggc      2520
     gacgacaccg attcgtatat tcatccgata tcgcgaagat gtatcgccaa attcgcgtcg      2580
     atcaacgcga tctcaattac caacgcattt tatggaatgc aacaccgcat gaaccgccta      2640
     ctgactacca gctgttaaca gtcacgtacg gtatgtcctg cgcgcccttc ctcgctcttc      2700
     gcgttttgaa acaactcgtc gacgacgaag gtcaccgatt tccgctcgcg gtatccattc      2760
     tacgcgagaa catttacatc gacgatattc tattcggcgc agacaacgcg gagttcattc      2820
     gacaagcgcg agaccacgta atcgctatcc tgaaatgcgg cggattcgat ttaagaaaat      2880
     gggccagtaa ttcgcccgct ctcctcgcgg atcttgatcc cgccactctg agttcggcag      2940
     gcaaaaaacc tttctcccct gacgaacaaa tcaaggttct cggtatcggg tggaatccta      3000
     ccaccgatat ttttgaattc agcgtcgcac tttcgagccc cgttccatct agcaaacgta      3060
     ccattctgtc cgctattgcg aaactgtacg accctctcgg atgggtcact ccagtcatta      3120
     taaccgcgaa aattcttatg cagcaattat ggcgacagaa attagactgg gatgatacgc      3180
     ttccccccac tctgttgtct cggtgggaag atatttattc tcggttcggg catttaaaaa      3240
     atttgcagat ctcgcgatgg tgcggactcg gatcggacgt tgagtccgct gaaatacacg      3300
     gcttcgccga cgcgtcgaac actgcttacg ctgctgccgt gtatcttaaa gttgtttcgt      3360
     cgggacaaac taccatttcc ttgctagtag gtaaatcaaa ggtcgcgccg ttaaaaccgc      3420
     taagcgtgcc acgattagaa ttatcagctg cactactact ctcccgactt gtcaatttcg      3480
     tgcgcgaatc acccggttac agcaatcttc cgtacttttg ttggacggac tccacgatcg      3540
     tcctcgcgtg ggtgactcag catccgtcgc gatggaagac atttgttgcc aatcgcgtca      3600
     atgaaattca atctcgtctt ccaaacggga agtggcaaca cgtctcgaca gaagacaatc      3660
     ccgcggattg tgcttcgcgc ggcctactcg gcaacgaaat cgtcagtcac gacttgtggt      3720
     ggcacggacc atcttggctg cgccttgatg ctcccgcatg gccttgctcc gacgcacgac      3780
     tacctccgca agctccattg gaggaaaagg tcatagcctt gcaatgctct cccccgaacg      3840
     acacttggga tctcccgacg cgatattcct catggcctaa attaattcgc gtcaccgcct      3900
     atattttgaa gttcgtacgc ttatgccgcc gctcctgttc taacgacaat tcattgtcat      3960
     cctcctcaca accacttatt atttccgcat cggaatgcaa cgatgcacga atattttggt      4020
     taaaaaagat tcaatcgagc acatttccgg ctgaaataca ttctctggcc aacaatcatc      4080
     ccctctcgtc taaatgctcg attctcgctc tacggccgtt ccttgataag gacggaattc      4140
     tacgcgtggg tgggcggttg gctaaggccc ccctgtcatt ttctgttcgg catccgattc      4200
     tcctggcgac ccatccattg gtgtcgctga ttgtaactca ggctcatcta cgggcattac      4260
     atgccggacc tcagctcacg ataagtttgt tacgtcgcga tttctggatt ctccgcgctc      4320
     gtaacatcgt aagatccata attcataact gtgtcgtatg tacgcgcgaa cgcgccgcga      4380
     ttcctaccca actaatgggc gaccttcccg aggctcgtgt gtcggcgtct gctcgcagtt      4440
     ttttgcattg cggggtagat tatgctggtc ccgtgcagat tcgcgcttct gcgggtcgag      4500
     gcattacatc gcgtaaagcc tatatcgccc ttttcatttg tctagcgacc agagcgatac      4560
     atttagagtt agtcggagat tactccacct cggctttttc aaacgccttt tcccgttttt      4620
     gcgcacgtcg cggccttccc caagccatgt attctgataa cggaacaacg tttgtcggag      4680
     ctgatcgcga gatgaccaaa gcgtacagag cggctgtgcg cgatcctaat tttttaaatt      4740
     taaccgcatc cgataatata acgtggaatt tcattccacc atctgctccg cacttcggcg      4800
     gcttgtggga ggccggcgta cgaagcgtta aaaaccattt gcgtcgcgtg ttaggcactc      4860
     ataggctcac cttcgaggaa ttcaccactt tgttatgcag gatcgaagcc tgcttaaatt      4920
     cacgtccgat cgcgcctctt tcgaacacgc taaacgatta cgaatgttta actccgggtc      4980
     attttttggt cggatccgct ctgattgtaa atccggaacc atcgcttctt caactcaacg      5040
     agaaccgcct ttcgcgatgg caactcgtgc gacacatcac cgagcgattc tggaaattat      5100
     ggtataatga ttacgttacc acattacaac aacgaacaaa atggcgacaa gtccagccac      5160
     aaattcaggt cggtcaactc gttctcttac gaaactccat gttacctcca tgtaagtggg      5220
     agcttggccg agtgacacag tgtcacgctg gttccgacgg attagttcgt gtggttactg      5280
     tcaaaacagc cacgtccgag tatcaacgac ctatcgttaa actgtgcgtt ctcccgatcg      5340
     atagcgaggc gtcgagcaac taaatgcgtt ttttttaatt tattagttct gttagtttct      5400
     aagttcgatt taagcgttct ccgatcaatt ctatgttact tgttttatac gcgtttattc      5460
     atgtaattcc tactgtattg cgtcatggcg ggcggaaggg aactccgcaa tttcattttg      5520
     ctgtaacgac gtttcggaat taaccactta attccgaggc gggcggta                   5568
//
ID   BEL-8_MoPha-LTR repbase;    DNA;    INV; 911 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-911
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1154-1154 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 911 BP; 187 A; 274 C; 194 G; 254 T; 2 other;
     tgttcgagac tataacaatc attttagagt tctaacattt ccccttttat tggctctgtt        60
     ttatccgcgc gtagtgagag ctcctgacag ctatcgagct ccgtgtagtt catttcttcg       120
     atgcaccgag tcgcgcggcg ctgtcactag ctcctcacgc gcgcgatttt cgtttgctcg       180
     catcgccagt aactatgcat cttggtaact atgcaaataa acaagcccaa aaaagggcac       240
     gtccaaatcc atgcccaaat aagtctcgat atcggttccc taccgcccct tttctcgcct       300
     ccgatcgtaa ttgttttacg atgcataatt cttcagtctc tcgcagcccg gcaccgaaat       360
     cagatcgtcc agcagatctc tcccgtcttc cgccgatcct agctgcgggg attcacttcc       420
     gcttttccct atcattcgcg ccgtgatagt gcgagtgaat tattaattaa tccgctccgg       480
     ccaagcaatt cttaattttc atatccgcgt gaatgttgtg agtgtgttac gtccgtgcgc       540
     aggtgaccgt atctttcccg cgaacgtcct ctgcctcgcg cacaagatct ccgtcggatc       600
     gcgcgcaaga tttccggatt cgcgagggcc tcgatctcgt ggctctgcaa gatttccgcg       660
     tcgattaggc agcgcaatat cagggcgtat caagatatcc gacacagtgt aaaagatacg       720
     gttcgcccct cgcttcgagc gttcgtttgt tgaataaata attcagtgtg agtgatatct       780
     acgcctcctc cttattccta tcacctcccg tgaacctccc gcattcctgm ccactcactt       840
     cgcgtctcta tcgggacgga tcccggcaat tccccmcgtg cgatcgcgtt taccctacgc       900
     acgcgcgaac a                                                            911
//
ID   BEL-8_SI-I  repbase;    DNA;    INV; 5587 BP.
XX
AC   AEAQ01025887;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SI_;
KW   BEL-8_SI-LTR; BEL-8_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5587
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01025887; Positions   13042   18628.
XX
CC   Positions [4619-5185] - Integrase core
CC   'TTCTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..4037
FT                 /product="BEL-8_SI-I_2p"
FT                 /translation="MSENAGNLRKARGYVKAKLTRLRTQTLQIVEEKGELD
FT                 KEQAESRLEKLEEIYRGFEAIQTQLLEQVNDLSEDDTAEEEVFEQKYFEVK
FT                 SVLKRFMRVPSEGIESSGTIVQLLRQQSELIQRIGSGAHSDVSAITPSAEN
FT                 EAIAAILARQTEILDRVAITANSHNVDNRVKLPTIKLPRFDGKIEEWKFFF
FT                 DNFRSIIHDKPHLSDIEKFQYLTSSISGEAAKIIESIELSGQNYRTVWDLL
FT                 QQRYDDPRSLKKKHIQCLFTMPTVTKESSRALRELIDYVSRHLRVLKVLGS
FT                 PTEAWDELVLHMIETKVDVKTLRAWEEKIKSSENPSLADMLEFLRGKCQTL
FT                 ERIESRTVDKIEKPSKEGEHRNKGFVTTGTKSQSYNKSESIKKTTLSASLG
FT                 SGKCYFCNDENHFIYYCDKFLALSVPDRINEVKRLRLCINCLRNDHFVKNC
FT                 KMGPCRECTQRHNTLCHLAQEGKASIDKPINSQSQDEANKEKSVNSMSVHH
FT                 ASNNSQRRHVLMATAVVEAIRRDGSVVQLRVLLDSASEVNFVTRDIHNKLG
FT                 LKRHRVSEIVSGLNDTENKIYNSCDVHIKSKHSSFETNAQCFIVPKIAKCL
FT                 PSMRIEFEQSKIPNDINLADSEFYKPGPIDMLLGAEFYYDLLETGKIYLGG
FT                 NRLILQNTKFGWVIAGSMQPIALKDQFRKQESLCAMICSLRSEDSLSKDLE
FT                 RFWKLESYDDNKRGDLSFDETECERHFEQNTTRADDGRFIVRLPFRKTNKL
FT                 IGNNKEIALKRLYQLERRFKGNNAFYARYARFMSEYIELGHMSIASEPLDN
FT                 CKNVVYLPHHGVLKESSTSTKLRVVFDASSKNNKGTSLNDALLVGPTLQDN
FT                 LVDIVIRFRFYDIAITADLQKMYRQVSVHSDDRNFQRILWRFSNNDPVKEY
FT                 QLNTVTYGQACASYLAIRCLRLLATEGSERYPLAARALLNDTYVDDIITGA
FT                 NTIEDAQILQKQLVNLLSEGKFEAHKWCSNSNFALENVPVELRESSANLDI
FT                 EANDIIRTLGLEWNPSSDEFRFTAQKTSGASTKREILSAISKLFDPLGLIG
FT                 PVLTSAKILMQSLWKTKLDWDDPLPETVLIKWREFQASLIDVNVLRIPRLV
FT                 INSSGNSRVSICGFCDASENAYGACLYIRSINCHSIEVSVNLLCSKARVAP
FT                 LKRQSIPRLELCSAVLLARLINNVKRTLTVPIEEIRAWSDSMVVLYWIGGD
FT                 SNRWKPFVGNRVSEITDILPAEHWRHVKGSENPADLISRGATPAQLLDNSL
FT                 WWHGPKWLCDPHHSTIDDERCRLTTMILLSPRWSTKKTLKFAI"
FT   CDS           4004..5551
FT                 /product="BEL-8_SI-I_1p"
FT                 /translation="MEYKKDAQICNLNLHSISNDITHKIVEDCSTLTKIVR
FT                 SLAYCFRFISNCRKSPDDRTLTKLSMLELTEAHQAVIKYSQNLHFKEDVIQ
FT                 LQTHKQLCRTSQLQQLHAFLDENGILRVGGRLREAPWNFTRKHPILLPAKC
FT                 KITRLIIEREHRALLHAGPQLLLSSIRRQYWPLNARNLIRQICRACVWCVK
FT                 NNPKGLIQSMGSLPADRIQPSRAFSVSGVDFAGPIVTLVNKGRGRKTCKSY
FT                 VALFVCFATKAVHLEAVSELSTAAFLATLRRFVGRRGLPRKICSDNATNFV
FT                 GASRELEELYSFVRTSIDGAVGDTLQEMNIEWSFIPPYSPHLGDIWEAGIK
FT                 SCKFHLKRVMGNTLFTFEELTTALVQIEACLNSRPLSPLSSDPSDLQPLTA
FT                 GHFLIGGPLTSLPEVDLSDIKLNRLDHWESIQRAVQGFWQRWAAEYVANLQ
FT                 SRTKWKKTKENLKVNDLVLLQEDNLPPLKWKIGHVIESHAGKDGLVRVVTV
FT                 RTTNGIVKRAITKLCKLPVD"
XX
SQ   Sequence 5587 BP; 1700 A; 1107 C; 1312 G; 1468 T; 0 other;
     tatggtcctt cgagccggat tgaggtcgaa tcacagtcca gaaacgattc gagtctgatt        60
     cggaaaatac gtgaacgcat ttacggcaat tccacaaggc aagttaacca agcgatagat       120
     ccaagatgtc ggaaaacgcc ggcaatctga ggaaggcacg tggatacgta aaggcgaagc       180
     tcacaaggtt aagaacgcag acattgcaaa ttgtcgaaga gaaaggcgag cttgacaagg       240
     agcaagccga gtcaaggttg gaaaagctag aggagattta tcgaggcttt gaggctatcc       300
     aaacgcaatt gcttgagcag gtgaacgatc tcagcgaaga cgacaccgcc gaggaagagg       360
     tatttgaaca gaaatacttc gaggtaaaat ctgtattaaa acgatttatg agagtgccat       420
     cggaaggcat cgagtcaagc ggtacaatcg ttcaattgtt acgacagcaa tccgagctga       480
     tacaacgtat cgggagcggg gcgcacagcg atgtgtcggc cattacacca agtgcagaaa       540
     acgaggcaat cgcggccatt cttgcacgcc aaacagaaat tctcgatcgc gtagccatta       600
     cagcaaattc gcataatgtc gacaataggg ttaagctccc tacgataaaa cttccgcgat       660
     tcgacggtaa aatcgaggag tggaagttct tttttgacaa ttttcgttcc attatacacg       720
     ataaaccaca tttgtcggac attgaaaaat ttcaatattt aacgtcgtct atttccggtg       780
     aagccgcgaa aatcatcgaa tcgattgagt taagtggtca aaactatagg accgtgtggg       840
     acttattgca acagcgatat gacgatccca ggtcactcaa aaagaagcac attcaatgct       900
     tatttaccat gcccacggta acgaaggagt cctcgagggc acttcgtgaa ttaatagact       960
     atgtttccag gcatttgcga gtactaaagg ttctaggttc ccctacagaa gcttgggacg      1020
     agcttgtctt acacatgata gaaacaaagg ttgacgtcaa aactcttcgt gcttgggagg      1080
     aaaagataaa atctagcgag aatcctagtc tggcggacat gttggaattt ctcagaggaa      1140
     aatgccaaac gctagagcgg attgagtcaa ggacggttga taaaattgaa aagcctagca      1200
     aggaaggtga gcatcgaaac aagggatttg taacgacagg tacgaaatcg caatcttata      1260
     acaaaagcga gtcaattaag aaaacaacgt tatcagcctc attaggctcc ggtaagtgct      1320
     atttttgcaa tgatgagaat cactttatct attactgtga caagtttcta gcattatcgg      1380
     tacccgatcg catcaatgaa gtcaaacgat tgagactttg cataaattgt cttaggaatg      1440
     atcactttgt taaaaattgt aaaatgggtc cttgtcgaga gtgcacgcaa aggcacaata      1500
     cgttatgtca cttagcgcaa gaaggtaaag cgtctataga taaaccaatc aactcgcaat      1560
     ctcaagatga agcaaacaag gaaaaatcgg taaatagcat gtcggtgcat catgcttcaa      1620
     ataattcaca aagacgtcac gtgcttatgg ccaccgctgt cgttgaagct attcggcgtg      1680
     atggttccgt agttcaattg cgtgtacttc tagatagcgc gagcgaggtc aatttcgtga      1740
     cgagagatat acacaataag ctagggttga aacgacacag agtatcggaa atcgtttccg      1800
     gtttgaacga tacagaaaac aaaatttaca attcgtgcga tgtgcacatt aagtcaaagc      1860
     attctagttt cgaaacgaac gctcaatgtt ttatcgtgcc aaagattgct aaatgtttgc      1920
     catccatgag gatagagttt gagcagtcga aaattccgaa tgacattaat ttagctgatt      1980
     ctgaatttta caaacctggt ccaatagaca tgttgctagg agcggaattt tactatgatt      2040
     tgctagaaac gggtaaaatt tatcttggcg gaaatcggtt gattttgcaa aataccaaat      2100
     ttggttgggt aatcgctggt tccatgcagc ctatcgcgtt aaaagatcaa ttccgcaagc      2160
     aagaatcatt atgtgcgatg atttgttcct taaggtctga agattcattg agcaaggacc      2220
     tggaaagatt ttggaaactg gaaagctatg acgataataa gagaggagac ctatcctttg      2280
     acgaaacgga gtgtgagcga cattttgagc aaaataccac acgagcggat gacggtagat      2340
     tcattgtaag gttaccgttt cgcaagacaa ataaacttat cggcaataac aaggaaatag      2400
     cattgaaacg attgtatcaa cttgagcgca ggttcaaggg caataacgct ttttatgctc      2460
     gatatgcaag gttcatgtcc gaatatatcg aattagggca tatgtcgatc gcaagcgaac      2520
     ctctagataa ttgcaaaaac gtggtttatc tccctcacca tggcgtgcta aaggagagca      2580
     gcactagtac taaactacgt gtcgtgttcg acgcatcgtc taaaaataat aagggcacgt      2640
     cattgaatga tgctcttttg gtcgggccca cattgcaaga taatttagtt gacattgtta      2700
     ttagatttag attttacgat atagcgataa ctgccgatct gcaaaaaatg taccgccaag      2760
     tgtcggtaca cagtgacgat cgtaattttc aacgcattct atggaggttc tcaaacaacg      2820
     atcccgtaaa agagtatcaa ttaaatacgg ttacttatgg tcaagcgtgt gcgtcctatc      2880
     tagctatacg atgtttgagg ctactcgcta ctgaagggtc agagcgttat ccattggcgg      2940
     ctcgagcgtt attaaatgat acgtacgtgg acgatataat taccggtgca aacacgatcg      3000
     aggacgcaca aattttgcaa aagcagttag tcaatttgtt gtccgagggc aaatttgaag      3060
     cccataaatg gtgttcaaat tctaattttg cattggagaa tgttccagta gaattgcgag      3120
     agtccagcgc aaacttagat atagaggcaa atgatattat cagaacatta ggtctcgagt      3180
     ggaatcctag ctcggacgag tttcgattca cggctcaaaa aacgtcaggt gcgtccacga      3240
     agcgtgaaat tttgtcggcg ataagtaagc tattcgatcc tttaggatta atcggtccag      3300
     tcctgacaag cgcaaagatt ctgatgcaaa gtttatggaa aactaaatta gattgggatg      3360
     atcctctccc agaaacggtt ttaattaaat ggcgagagtt tcaagcgagt ttgattgacg      3420
     tgaatgtatt gcgtatacca cgattagtta ttaactcttc gggaaacagc cgagtttcaa      3480
     tatgtggatt ttgtgatgca tccgaaaatg catacggtgc atgtctttat ataagatcta      3540
     ttaattgtca ttctattgag gtatctgtca atttattatg ttcaaaggcg agagttgctc      3600
     ccctgaaaag gcaatcaatc cctaggttgg aattgtgcag cgcagtatta ttggcaagat      3660
     taattaacaa tgtaaaacga acgttaactg tgcctattga ggaaatacgt gcttggtcgg      3720
     actcgatggt ggtcctatac tggataggcg gagattcgaa tcgatggaag cctttcgtag      3780
     gtaatcgagt gtctgaaatc actgacattc tgcctgctga acattggaga cacgtgaagg      3840
     gttctgagaa tcccgcggat ttaatatcca gaggagctac acctgcacaa ctactagata      3900
     attcgctgtg gtggcacggt cccaaatggt tatgcgatcc acatcactcc actattgatg      3960
     atgaacggtg cagattaacg acgatgatct tgctttcgcc aagatggagt acaaaaaaga      4020
     cgctcaaatt tgcaatttga atttgcattc aatttcgaac gatatcacac acaagattgt      4080
     cgaggattgt tccacattaa caaaaattgt acgatcgtta gcctattgct tcaggttcat      4140
     ttcgaattgt cgcaagagtc cggacgacag aactctaacc aaattgtcta tgttggaatt      4200
     gacagaagct catcaggcag tgattaagta ttcgcaaaat cttcacttca aggaggatgt      4260
     aatacaattg caaactcata agcagttatg ccgaactagc cagttgcagc aactgcacgc      4320
     tttcctggat gaaaacggta tccttagggt gggcggtcgc cttcgtgagg caccctggaa      4380
     cttcacgaga aagcacccta tactattacc tgccaaatgc aagataactc ggttgattat      4440
     cgaaagggaa catcgtgctc tattacatgc agggccacag ctgttgctct cttcaatacg      4500
     tagacaatac tggccattga acgccaggaa cttgattcgt caaatttgcc gtgcttgtgt      4560
     atggtgcgtc aaaaacaatc caaagggatt aattcaatca atgggatcac tgccagccga      4620
     tagaatccaa ccttccagag cattttctgt ctcaggagtg gactttgcag gtccaatcgt      4680
     cacgctcgtt aataaaggac gtggcaggaa aacgtgtaaa tcgtacgtag ccttgtttgt      4740
     ctgctttgca accaaggctg tccatttgga agccgtcagc gaactatcta cggctgcatt      4800
     tctagccact ctacgaagat tcgtgggacg cagagggttg ccgcgcaaga tttgcagtga      4860
     taacgctacg aacttcgtgg gagcaagccg tgaacttgaa gagctttatt catttgttcg      4920
     tacctctatc gatggtgccg taggtgacac cttgcaagaa atgaatatcg aatggagctt      4980
     catccctcca tattctcccc atctgggaga catatgggaa gcgggaataa aatcctgcaa      5040
     atttcattta aaacgagtaa tgggtaatac tctatttaca tttgaggagt tgacaacggc      5100
     gttggtccaa attgaagcct gcctaaactc caggcccttg tcgcctttgt cgtcggatcc      5160
     ttcggatcta caacctttga ccgcaggtca ttttctaata ggcggacctt taacgagcct      5220
     accggaggtg gacttatcgg acatcaaact taatagactt gatcactggg agtcaataca      5280
     aagagccgtt caaggattct ggcagcggtg ggcggcggaa tatgtagcca acctacaaag      5340
     tcgcaccaaa tggaagaaga ctaaggagaa tctcaaggtc aatgatcttg tattgctgca      5400
     ggaggataat cttccccctc tgaaatggaa gattggtcat gtgattgaat cgcacgctgg      5460
     caaagatggt ctagtgcgag tggtcaccgt tcgtacgact aatggtatcg tcaagcgagc      5520
     catcactaag ttgtgcaaat tgcctgtaga ttgataaaga ttaattactt aatcttggtg      5580
     ggcggtg                                                                5587
//
ID   BEL-8_SI-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   AEAQ01025887;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SI_;
KW   BEL-8_SI-I; BEL-8_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-276
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01025887; Positions   12766   13041.
XX
SQ   Sequence 276 BP; 58 A; 64 C; 57 G; 97 T; 0 other;
     tgttcacgct cataattagt catttctatt actttgcatt tattttacgt ctttgaaatt        60
     agcgcgccct cagggcagca actcaacctt cagtgatcgc ttcggcgaca gatgtcgtgg       120
     cgagcgttgt ctagtttcgt ttagcgagcg acggctctcg tcatggggct agttacttac       180
     ttacttactt ctccttgttc tgtacccgag cgtcgagagc ttgtaaaatt tcgcaataaa       240
     ggttttgttt tcgaattcaa ttttcgctat ccaaca                                 276
//
ID   BEL-8_SiCu-I repbase;    DNA;    INV; 5499 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5499
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4983-4983 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           490..5466
FT                 /product="BEL-8_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MTTFGAYHHRQRHGNKESKYHLHKHQFPXLDGVTQLA
FT                 QAITQAIGNVSVDRAPVAHGKGAPKLPRFDGDPLEWPAFISQYRSTAKQHH
FT                 LTKEDNVIRLRYCLDGTAKECVKALLVSPENVETVLHMLEMNFGRPRMIIK
FT                 KLVDKAKKLDFVADGNWEQLLTFSNVVRNLVETMKSLKCQHHMLNPQLLDE
FT                 LAEKLPTQFHFDWMAFVRRHEDANLEDFSGFVTSIAETAAMMSDRKTCVDD
FT                 KQKKKERVFLSKEKKESTCHFCGLSGHWISSCEKFKNMDEDERWKVTMEKR
FT                 ICYCCLIPGHQAMKCRRKKPCGKDGCTQFHHPLLHKSSRKEEKREQGHSLD
FT                 DDDNTSHLPYIPVILSSGGKEVKVIAFLDDGCTSTLVEKSVADLLELQGRK
FT                 DPLSLQLVKNKQTEEEESMRVSFQIRGDYDGARSFDISGARTISRLGICQQ
FT                 TMDFDKLKKKYTYLDGLPAQSYFNERPSIIIGQANKLLSLSRRFVHGKEGQ
FT                 PVAEKTWLGWVISGKLPERNNLDGSYVIREEVNSDELLHQLVKESFSTEAF
FT                 GVKIIHEKARSREDTRAIELLETNTKKTGDCYETGLLWRSDKPEVPPSYHN
FT                 ALNRLKCQERKMDKDSKFASLYVDKIDEYLGKGYIQKLAKEEIFSKDEKIN
FT                 YLPHFGVYNPNKPGKIRLVFDAAAKNGGVSLNDLLLQGPDLLNPLPAVLMR
FT                 FRKKRIGFSADITDMFHRIKIRKEDLPAQRFLFRGMDRERTPDVYQMNVML
FT                 FGATCSPSAALYVKNLNAEQNREEFPEAYNAIINQFYMDDYLDSADTEEEA
FT                 TKLINEVIHVNKLGNFTLCKWVSSSKAVLEKIPIDLRVEGLKELSLAEADI
FT                 PLGRALGIWWEPEEDVFTFKAEFHKVSSEVLTGDKTPTKREVLQLLMSIFD
FT                 PLGFVAHFTVRGKMLLQLIWNSGVHWDEEIPENLHGKWKNWIVELKKIVNL
FT                 KIPRCYSLKIPRAESIQLHIFMDSSQLAFACSAYLRVEADGEVDVMLVAAR
FT                 TRVAPLKPMSIPRLELQAAVAGSRLGACIRENIGLEITYTYHHTDSRTVLC
FT                 WIKSEARRFKQFVAHRIGEIAELTDINSWRWVPTAENVADDATRDEKECDL
FT                 KPSSRWFNGPSFLKEEPSKWPVLVEVSLPEAVKQEEEKKKEFLGVITEVKL
FT                 LKIEDYSSWLKLLGVTGWILRFLNKTAKKNTDSGEMLSITEGRKAEIILVK
FT                 ISQQQSFEEEIRQLAQNKLIGKSSRLSKLSPFLDDNGVLKMKTRFAQAAAI
FT                 IEQEKYPIILDGRHHLVKLLVLYYHYTWAHGGRGIVMNELRRKYWIIGMSS
FT                 VVRKAIGECVVCRKRKVQPVIPEMGNLPDAKLAVFHRPFTFCGVDCWGPME
FT                 VTVKRSREKRYGMIFTCLTTRAIHLELLSSLTTDSCIQAILRMRSRRGTPE
FT                 VIISDNGTNFVGASRELSAAVKEIPQTLGKYGIEWRFNPPGAPHMGGSWER
FT                 LIRSVKTTLSVILKEQAPKEELLRTVITEAEFIVNNRPLTEVPVDYSSPRA
FT                 LTPNDFLIGPDKNGSEERTDVICLPNVNGKDLKRLWCTSQWYADQFWKRWR
FT                 LEYLPTLARREKWNKPSVPLAVNDVVIVVEPLMERNLWPIGVVTAVHSRKG
FT                 DNAVRVVDVRVVKNGGRQNFKILRRPVSRVCLLEKAEDTRG"
XX
SQ   Sequence 5499 BP; 1688 A; 1070 C; 1474 G; 1266 T; 1 other;
     ttaaagtggt ccttcgccga aaaagaaaca gcacctttgg agaacagtag cagttagcaa        60
     tggagcagtc agctggagaa aaaagaagga gttctcgtcg taacgctggt cagccagctg       120
     agcggcttgg aacatgggtc gtggatcagc aacgcagaaa agggatccag ccaacagaga       180
     atcaacaggg acaccaggag gaattggaag cacaaccgcc tcatcccctg gaggaagtgg       240
     aaatagaaga taacgcgtcg cagcgggccg tttccgttcg gtcgtcagca aagtcacgag       300
     gaacaggaag tggcaagagt agcagtttca gaagagcaaa acgagagatt gagttggcgg       360
     cggctgagga gttagcagaa attgagctag ccaaactaaa aattaaagaa gacctcctga       420
     agaagaagac ggagattcaa atggaggagg ctgaagactc ggacaactcc cagaagctca       480
     gtgattcgga tgacgacctt tggagcttac caccaccgac aaaggcacgg caacaaggaa       540
     agcaagtacc acctccacaa gcaccagttt ccakctttag atggagttac tcaactggct       600
     caggccatca cccaggccat tggaaacgtg agcgttgacc gcgcaccagt cgcacatgga       660
     aagggagctc cgaaactgcc gaggttcgat ggggatccgt tggaatggcc agcctttatc       720
     agccagtacc ggtcaacggc gaaacaacac cacctgacaa aagaagacaa cgtaatccgt       780
     ctacgttact gcttggatgg aacagcaaag gaatgcgtga aagcactact cgtgtcacca       840
     gaaaacgtgg aaactgtgct ccacatgttg gagatgaact ttggaaggcc ccgaatgatt       900
     attaaaaaac tagtggacaa agcgaagaaa ttggatttcg ttgctgatgg aaattgggaa       960
     caattgctta cgttttcgaa cgtggtcagg aacttggtgg agacaatgaa gagcctaaaa      1020
     tgccaacatc acatgctcaa tccacagctt ttggatgaac tggctgagaa gttgcccaca      1080
     caattccact tcgactggat ggcttttgtg aggagacatg aggatgcgaa tctggaggac      1140
     ttcagcggtt tcgtcacgag cattgcagaa acggctgcca tgatgtcaga caggaagaca      1200
     tgcgtggacg ataagcaaaa gaagaaggaa cgtgtcttct tatcaaaaga aaagaaagaa      1260
     agcacctgtc acttttgtgg attgtctgga cactggatct catcgtgtga aaagtttaaa      1320
     aatatggatg aagatgagcg ttggaaggtc acaatggaaa agaggatttg ttactgttgt      1380
     cttatcccag gacatcaagc catgaagtgt cggaggaaga aaccttgtgg aaaagatgga      1440
     tgtacgcagt tccatcatcc cttactgcac aagtcaagta gaaaggaaga gaaacgcgaa      1500
     caaggccatt cattggacga tgatgataat acttcacatt tgccgtacat ccctgtcatc      1560
     ctttccagtg gagggaagga agtaaaagta attgcatttc ttgacgatgg ctgtacatcg      1620
     accttggtgg agaagagtgt tgctgatttg ctggaacttc agggaagaaa ggatccattg      1680
     tcactccagc tggtaaaaaa caagcaaact gaggaggagg agtcaatgcg agttagtttc      1740
     caaatacgag gggactatga cggagcaaga agttttgaca tttctggagc taggaccatc      1800
     tctaggcttg gaatttgtca gcagacaatg gactttgaca aattgaagaa aaagtatacc      1860
     tacctggacg gattacctgc gcagtcctat ttcaatgaga gaccatcaat aatcatagga      1920
     caagcaaata aactgttatc actttctcgt cgcttcgttc atggaaagga aggtcagcct      1980
     gtagcagaga agacttggct tggatgggtg atttccggaa agctaccaga aagaaacaat      2040
     ttggatggaa gctatgtcat acgggaggaa gtcaattcag atgagcttct tcaccagctg      2100
     gtcaaggaat cgttttcgac ggaagctttt ggagtcaaaa taattcacga gaaagctcgt      2160
     tccagagaag atacgcgtgc aatagagctg ttggaaacga acacgaagaa gactggagat      2220
     tgttacgaga ctggactact ttggaggagt gataaaccag aagttccgcc aagttatcac      2280
     aacgcattga ataggctgaa atgccaagag aggaagatgg acaaggactc aaaatttgct      2340
     tcgttgtacg tggacaagat tgatgagtat cttggaaagg gttatattca gaagctggcc      2400
     aaggaggaga tcttctcaaa ggatgaaaaa ataaactacc ttcctcactt tggagtctac      2460
     aaccccaaca aaccgggaaa gattcgccta gtttttgatg ctgcagcaaa aaatggaggc      2520
     gttagtctga acgacttatt gcttcaagga cctgatttgc taaacccgtt gccagctgtc      2580
     ctcatgagat tccgaaagaa gaggattgga ttcagtgctg atatcacgga catgtttcat      2640
     cggatcaaga taaggaaaga ggatctacct gcacaacgat ttctcttccg tggcatggat      2700
     agagaaagga cacctgacgt ttatcaaatg aacgtgatgt tgtttggggc cacatgttct      2760
     cccagtgcag cgctttacgt gaagaacctg aatgcggagc aaaacagaga agagtttcca      2820
     gaagcttaca acgccatcat taatcaattt tacatggatg attatctgga ttcagcggac      2880
     acggaggagg aagcaacaaa attgataaac gaggttattc acgtgaacaa gttgggcaat      2940
     tttacgcttt gcaaatgggt ctcctcgtca aaagctgtac tggagaaaat cccaattgat      3000
     ttacgggtgg agggattgaa ggagttgagt ttggctgagg cggatatccc attaggacga      3060
     gcacttggaa tttggtggga gcctgaagag gacgtgttca cttttaaggc agaattccat      3120
     aaggtgtcta gtgaagtttt gactggagac aagaccccaa caaaaagaga agtgttgcag      3180
     ctgctaatgt caatttttga cccattggga ttcgtcgctc attttacggt acgtggtaaa      3240
     atgctattgc agctaatttg gaacagtggg gtacattggg acgaagagat tccagaaaat      3300
     cttcacggaa aatggaagaa ctggatagta gagctcaaga aaattgtcaa tttgaagatt      3360
     ccgaggtgtt attccttgaa gataccacgg gcggagtcga ttcaactcca catttttatg      3420
     gattccagcc agctggcatt cgcttgttca gcttatctac gggtggaggc cgatggtgaa      3480
     gttgatgtca tgttagtagc agcaagaaca agagtagcgc ctctgaagcc gatgtcaatt      3540
     ccacgtttgg aactccaagc agctgttgcc ggaagcagat taggagcctg tattcgtgaa      3600
     aacattggac tagaaatcac gtatacttat catcacacgg attccagaac agtactctgc      3660
     tggataaagt ctgaagcaag gcgtttcaaa cagtttgtgg ctcacagaat aggagaaata      3720
     gctgagctaa ctgacatcaa tagctggagg tgggtgccaa ctgccgaaaa tgtagctgac      3780
     gacgcgacga gagatgagaa ggaatgtgat ctcaagccga gttcgcgctg gtttaacgga      3840
     cccagtttct taaaagaaga accgtcaaaa tggccagttc ttgtggaggt tagtttgcct      3900
     gaagctgtga aacaggaaga agaaaagaaa aaggaatttt tgggagtcat cactgaggtc      3960
     aagttgctga aaattgaaga ttattcatcg tggctgaagc tgctaggagt gacaggatgg      4020
     atcctacgtt ttttaaataa gacggccaag aagaatactg acagtggtga aatgttaagc      4080
     ataacggaag gaagaaaagc ggaaattatt ctcgttaaga tttcacaaca gcagagtttt      4140
     gaagaggaga tacggcagct agctcaaaac aagttgattg ggaaatcaag ccgcttatca      4200
     aagctctcgc cctttttgga tgacaacgga gttctgaaaa tgaagacaag atttgcacaa      4260
     gcagcagcga taatagagca agaaaaatat cccattatct tggacggtcg tcatcacctt      4320
     gtcaagttac tcgtgttgta ttatcattat acttgggccc acggcggaag aggaatcgtc      4380
     atgaacgaac tacgtaggaa atattggata attggaatga gtagtgtagt tcggaaagca      4440
     attggagagt gtgtggtatg tcgaaagcgc aaggtacaac ccgtcatacc tgagatggga      4500
     aatctcccgg atgcaaaact agccgttttc catcgtccgt tcaccttttg tggagtcgac      4560
     tgctggggtc caatggaggt gacggtgaaa cgatccagag aaaagcgtta tggcatgatt      4620
     tttacttgtc taacgacacg cgcaatacat ttggagttat tgagcagttt aaccacagac      4680
     tcctgcattc aagcaatcct gagaatgcga tctaggcgag gaaccccgga ggttatcatt      4740
     tccgataatg gtacgaactt tgtgggggca agtcgagagt tgagtgcagc agtgaaggag      4800
     attcctcaaa cgctgggaaa atacggaatc gagtggcggt ttaatccgcc tggcgcaccc      4860
     cacatgggag gaagttggga gaggctcatt cgttcggtga agacgacgtt atcagtcatc      4920
     ctgaaagaac aagcgccgaa agaagagctg ctgagaaccg tgattactga agcggagttc      4980
     attgtgaaca atcgcccgct gactgaagtg cccgtggact acagctcccc aagagctctt      5040
     accccaaacg atttcctcat tggacctgac aagaacggga gtgaggaacg aactgatgtc      5100
     atttgcttgc ccaacgtcaa cggaaaggac ttgaagcggt tgtggtgcac aagccagtgg      5160
     tatgctgatc agttttggaa gaggtggcgg ctggagtacc taccaactct agctcgccgt      5220
     gagaagtgga acaaaccgtc tgttccactt gcagtaaatg atgtggtcat tgtcgtggag      5280
     ccgttgatgg agagaaacct gtggccaatt ggagttgtga cggcagtaca ttccagaaaa      5340
     ggagacaacg ctgttcgtgt tgtggatgtg cgggtcgtca agaacggtgg aaggcaaaat      5400
     ttcaagatcc tgcgtcgtcc cgtgtctcgc gtctgcctac tggagaaagc cgaggatact      5460
     agaggataat ggaacttttt ccaatatcag gaggaagaa                             5499
//
ID   BEL-8_SiCu-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-493
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4967-4967 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 493 BP; 149 A; 70 C; 111 G; 163 T; 0 other;
     tgttgcggca aatatgtcaa aattatagtg ttgtgtttca aagcgttcga gaaacgaacg        60
     cttttagtcg tcgtcgtgac gagaaggttg cggggagtta tgtctccgtt tttagtatat       120
     tttttgggag tgctttttat cgtcattggt catttgttgt ggtttttagt cagagtcagg       180
     caggagagct aaattgtaaa atcgttaatt gagtaattag ttaattgttg ttaatcactt       240
     aaaaacgata aaagtgaata ataaaaaccg taaaattgtt atttgttaaa agaaacgatt       300
     gctccaagat tctgtgtcat ttggttagaa gcaaaattaa agtcacatca gtaacgttag       360
     ccagttagtg catatccact tcctatttgg agctcagcag acaagttaga agtctggagt       420
     agggattagc accggcacaa agtctttttg tcttggaatc aagtaacgct atcgaagata       480
     actttccagg aca                                                          493
//
ID   BEL-8_SpEx-I repbase;    DNA;    INV; 5994 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5994
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6890-6890 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           647..5845
FT                 /product="BEL-8_SpEx-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MSLLSKHSTRRLKGSKSKSIDVEEYTAQDLPSLRRKR
FT                 TMSYNRLVKALEIGTVALSDSSKRDLFLSYYRDIKTIAHNFEHAHLIILDI
FT                 LDDPEDVDNKMQERFDDMYYQVGSIYHSLTKSFPPSSQSQNANYSSNIRLP
FT                 KIVLPSFSGNIKQWPEYYDTFNALIHNSTTLTDTEKFHYLVSSLSGEALTV
FT                 VKTFPKTQDHYHDAYQTLVNRYKSKRNLSFICWREVLNTDFKHNDANKFQT
FT                 SLDLLEENLCILKTLDFPVQHWDFVLVYHILSKIDPEVRQSLEEKYSDVEI
FT                 PSFDQVKSFLRAKSEALIRGTHFTATTKLKSNQTAPAVVTSQSRRTPAATV
FT                 LAASLDIKQTTQPYKCAYCDESHSITSCPTFLKKSVDERINVAHEKKWCYN
FT                 CLKSSHQLKDCKSIFTCRTCKRKHHTLLHRERPQPQEPNPTVSALISKSHL
FT                 NTTVLLATAIVQVRDASGKMQSFRALFDTGSQSNFITESAVKSLGFTPAKV
FT                 DTKVSGLGEAMAPISGDVTCSVGTSTRVYYKLNMHVIKKICGDQPIAQLNT
FT                 SGWSHIKSLTLADPGFDIPGPIDLLLAADVFVESILNQRIKGGYNQPTAFN
FT                 SIYGWLLLGKTSLSSTSLLQQSAIPSSDNDLNSIVQRFWEIDSLPSSSSLS
FT                 PEESLCEQIFISTHSRDKTGRYIVRIPFKNDTEPTFEGSREVALRRFYAIE
FT                 RRLSRDPDLRSQYSEFMSDYLESGHMSLVPSEDMGQGKYYLPHHCVLRPHS
FT                 TSTRLRVVFDASAKDLHSRSLNDTQLIGPKLQPNILELLLRFREPNIVFMA
FT                 DARQMYRQIVLSSDQRDYQRIFWRNSPSEPLKEYRLNTVTYGLASSPYLAC
FT                 RTVRQLAEDEGDSYPLAKQALLTQVYIDDLATGFPTLETAQEAKSQIIALF
FT                 KRGQFHLRKWVSNHPPLLSDLPSKDCLAGAVSFDNTETSTLKILGLQWDPS
FT                 SDTFGFAIESSDRRCTKRSILSETARIFDPLGFLSPITIQAKCMIQKLWVL
FT                 GIGWDETPPDDVIRTWNTYRDQLPELAQFKIPRKLTCPDAKSYEIHGFCDS
FT                 SEVAYGAVVYLRVVQASRVNVFLVCSKARVVPLKRISLPRLELCAAVLLSD
FT                 IYKYVRDIYLSQIKIDNVFMWSDSTIVLSWLRSPSSRWATFVANRVSHIQD
FT                 ITPMECWHHVSSGDNPADICSRGQFPSEILVNSLWWAGPWWLSHDETNWPI
FT                 NSTNRPAQLTTDEESIVRAEARKTVTLTIRADGESQTEAIIEKLINRFSSL
FT                 QKLVNILTFVRRFITNCRNPAAANRSKFLNNVERHKSLMHLVKHVQQTTFS
FT                 EIILNLNSKKSIPKYFRKLNPFIDGRGILRVGGRISRAGLEYEHKHPAFLP
FT                 SDHPLTFLIIDYIHRNYLHPGINTTHFLLLQQFWIISAKRIIRQCLSKCIR
FT                 CYRVSPQPLQPFMSDLPAYRVNQVKPFSIVGVDFGGPFRIKLGPHRGAKID
FT                 KAYLCLFVCLATKAVHLEVVSTLSTDGFIAALRRFVARRGRCNEVHADCGT
FT                 NFVGASNQLATLMQHASNAEKITFKFNPPSAPHFGGVWEIQIKAAKSHLLR
FT                 IVGDQVLTFEELTTLFTQVEAVMNSRPLYPISSDPNDLTALTPGHFLTLEP
FT                 LTTVPDEDLSQVNTNRLHRWQLLQSFHQNFWSRWKNEYLNSLTQRAKWTRD
FT                 SKPLQVGSMVIIKDDNRAPLHWPLARVVDLLPGSDGVVRIAVVKTANNHII
FT                 QRPLVKLCPLPIA"
XX
SQ   Sequence 5994 BP; 1712 A; 1326 C; 1128 G; 1827 T; 1 other;
     tgttttggtg ccgaaacccg ggaaactttc acctattctt attacgttaa tggtattttc        60
     tggttagaaa cgtcatataa cttggtatac agaacaaacc tattacaaaa aaacgtttac       120
     cggctgcatt ccgagctata tttaacattt cttatagaaa taaaataacc gtttaaacct       180
     acgtaaaatc acaatcgttc caagagtacc ctcatcgaac aggaattatc cattgtcaca       240
     cacgtttatc gtaattattg tgggatctaa ttaggcaatc acttttctat cggtgcctaa       300
     ttccatcggc ttacgataat tacttaccac caatattaaa ttcaccattt ccattccatt       360
     ctaaatattt taatttcaat tataaaatta ttaaaagttg gttttaattt ttttacattg       420
     tgggtatctt cacatcatac gcgacggttg agcattcgta atcggcggcg atttcttggt       480
     agcggccgac cgtgtacacc gctccacaaa agttttggat cgcgcatgta tcgtgcgtca       540
     tagcaaattc aaacaaaact tgtgtggtta gctgtgccta ttcattctat tgagtaattt       600
     atctttgttg tttacgtgta atcgcacwtt tatttaacat ttcataatgt cgctgctcag       660
     taaacattct actaggaggt taaagggatc taaatcgaag tctatcgacg tggaggaata       720
     tacagcacag gacttgccat cattacgtcg aaagcgtact atgtcttaca accggctagt       780
     taaagcttta gagatcggca ctgtagcgtt gagtgactca tccaagcgcg acttgttttt       840
     atcatattat cgagacataa agaccattgc acacaatttc gaacatgcac atttaattat       900
     tttagatatt ttagacgacc cggaagatgt tgacaacaag atgcaagaac gttttgatga       960
     tatgtactat caggtgggat caatttatca cagtttaaca aaatcatttc caccctcatc      1020
     tcaatcgcaa aatgcaaact attcatctaa tattagatta ccaaaaatag tacttcctag      1080
     tttctcaggt aacatcaaac aatggcccga gtactatgat acatttaacg ctttaataca      1140
     taattctact acacttacgg acactgaaaa gtttcattac ttggtttctt cccttagtgg      1200
     tgaagcatta acggtagtga aaacgttccc taagactcaa gaccattatc acgatgcata      1260
     tcaaacatta gttaatcgtt acaaatctaa acgcaactta tcttttattt gttggcgtga      1320
     agttttaaat acagatttta aacataatga tgcaaataaa ttccaaactt cattagatct      1380
     tttagaagag aatttatgta ttttaaagac actcgatttc ccggtccaac attgggactt      1440
     tgttttggtt taccatatct tatctaaaat agacccagag gtacgccaaa gtcttgaaga      1500
     aaaatattcc gatgtagaaa taccatcctt tgatcaagtg aaatcatttt tgcgtgctaa      1560
     gtcagaagct ctaatacgtg gcacacactt taccgctact actaaactta aatcgaacca      1620
     gactgcgccc gcggttgtga cgtctcaatc tcgacgcacc cccgctgcta cagtgcttgc      1680
     tgcttctctt gatattaaac aaaccacaca accgtataaa tgtgcttatt gtgatgaatc      1740
     tcattcaata acgtcttgtc ccacgtttct taaaaaatcg gtggacgaac gtatcaacgt      1800
     agctcatgag aaaaaatggt gttataattg tttaaagtca tcccaccaac ttaaagattg      1860
     caaatcaata tttacatgcc gtacatgcaa gcgtaaacac cacacgttac ttcatcgcga      1920
     gagacctcag ccgcaggaac cgaatccaac agtctcggct ttgatctcaa agtctcattt      1980
     aaatactact gtcttgctgg ctactgctat tgttcaggtt agggacgctt caggcaagat      2040
     gcaatctttt cgtgccttgt tcgacaccgg gagtcagagc aacttcatta ccgaatctgc      2100
     tgttaagagt ttaggattca ctccagctaa ggttgatact aaagtcagtg gactcgggga      2160
     agctatggca cccatttctg gtgatgtcac ttgttcagta ggcacgagta cgcgtgttta      2220
     ttataaatta aacatgcacg tgatcaagaa aatatgtggc gaccaaccta tcgctcagtt      2280
     aaacacatcg gggtggtcac atataaaatc attgacgctg gccgatccag gattcgacat      2340
     acctggaccc atcgatcttt tattggctgc agatgtcttc gttgaatcta ttcttaacca      2400
     acgcattaaa ggaggatata atcaacctac cgcatttaat tcaatttatg ggtggcttct      2460
     tctaggtaag acatctttat catcgacttc tttacttcaa caatctgcta tacccagcag      2520
     tgataacgat cttaattcaa ttgttcaacg tttttgggaa attgattcgt tgccgagttc      2580
     gtcttcattg agtccagagg aatcgctctg tgaacaaatc tttatttcta ctcattcacg      2640
     tgataaaaca gggcgttata ttgtaaggat tcctttcaaa aatgatacgg aacctacttt      2700
     tgaaggctct cgtgaagtag ctttgcgccg attttacgct atcgagcgta gattatctcg      2760
     cgatcctgat ttacgtagtc agtattctga atttatgtca gattacctcg aatccggtca      2820
     tatgtcactt gtaccgtctg aggacatggg acaaggtaaa tactacctcc cccatcattg      2880
     cgtcttacgc ccccattcaa ctagcacacg tctacgcgtt gtatttgacg cttccgccaa      2940
     ggatctccat tcgcgttcct tgaatgatac acaacttatc ggtccaaaat tacagccgaa      3000
     tattttggaa ctacttttac ggttcaggga acctaatatc gtttttatgg cggatgcccg      3060
     tcaaatgtat cgccaaattg tcttgtcttc agaccaacgt gattatcaac gtattttctg      3120
     gcgtaactcg cctagcgagc cccttaaaga atatcgttta aatacggtca cgtatggttt      3180
     agcgtcatct ccatacctcg cgtgtcgaac tgtgagacaa ctcgcagaag acgaaggaga      3240
     ctcttatccg ctggcaaaac aagctcttct aactcaagta tatattgacg acttggctac      3300
     tggatttcca acactagaaa ctgctcaaga ggccaaatcg caaattatcg ctttattcaa      3360
     acgtggtcaa tttcatttac gaaagtgggt tagtaatcat cctcctcttc tatcggatct      3420
     tcctagtaag gattgcttag ctggggcagt gtcattcgac aacacggaaa cctccacctt      3480
     gaaaatattg ggtcttcagt gggatccatc ctcagatact tttggcttcg ctatagagtc      3540
     gtccgaccgg cgttgtacga aacgctcaat tttaagcgaa accgctcgaa tcttcgatcc      3600
     attgggtttt ctttcaccaa tcaccatcca agcgaaatgt atgatacaga agctatgggt      3660
     tcttggcata ggctgggatg aaactccacc tgatgacgtc attcgaacgt ggaacactta      3720
     tcgtgaccaa ctgccggagc tagctcaatt caaaattcct cgtaaattga cctgtccaga      3780
     cgctaaatca tacgaaatcc acggcttttg tgacagctct gaggtcgcat atggagcagt      3840
     agtgtatttg cgtgtggtcc aggctagtcg cgtaaacgtt ttcctcgtat gctctaaagc      3900
     tcgcgtggtt ccattaaaac gtatatcact gccacggctc gaattgtgcg ctgcggttct      3960
     tctttcagat atatataaat acgtacgtga tatctatctt tctcaaatta aaatcgataa      4020
     cgtttttatg tggtctgact caaccatcgt tctatcatgg ttacgttcgc cctcctcgcg      4080
     ctgggctacg tttgtcgcta atcgcgtcag tcatatccag gatataacac ccatggaatg      4140
     ctggcatcat gtctcctccg gcgataatcc cgcagacatc tgctcgcgcg gtcaatttcc      4200
     gagtgaaatt ctagtcaact cgttatggtg ggcggggccc tggtggctat cacatgatga      4260
     aactaattgg ccgatcaatt ccactaatcg tccagcacag ctcactaccg acgaggagtc      4320
     aatcgtgcga gctgaggctc ggaaaacagt gactttaact attcgcgcag atggtgagtc      4380
     tcagacagaa gcaatcatag aaaagttaat aaatcggttc tcatccttac aaaaattagt      4440
     caacatactt acgtttgttc gtcgtttcat tacaaactgt cgtaatccag ctgcagcaaa      4500
     tcgaagcaag ttcttaaata acgttgagcg acataaatcg ttaatgcatt tagtcaaaca      4560
     tgtacaacag acaacattct ctgaaatcat tttaaattta aactctaaga aatccatacc      4620
     taaatatttt cgtaaactga atccgttcat cgatggtcga ggaatactca gggtgggcgg      4680
     tagaatatcg cgagcgggct tagaatacga acataagcat ccagcctttt taccgtcgga      4740
     tcatccatta acgtttttaa ttatagatta tatacatcgt aattatctac atccaggtat      4800
     aaacacgaca cactttctac ttttacaaca attttggatt atctctgcta agcgtatcat      4860
     acgtcagtgc ctatcaaaat gcattagatg ctaccgtgtt agtccgcaac cgcttcaacc      4920
     gtttatgagc gatctgcccg cgtatcgcgt aaatcaagtc aaaccgttct ccatcgtagg      4980
     cgttgatttc ggtggcccat ttcgtataaa gttaggtcca caccgtggtg ctaagataga      5040
     caaggcatac ctttgtttgt ttgtgtgtct tgctaccaaa gcagtgcacc ttgaagttgt      5100
     ttctacttta agtaccgacg gttttatcgc agcattacga cgctttgtag cgcgacgtgg      5160
     tcgctgtaat gaagtacacg cggattgtgg gactaatttt gtaggtgcta gcaatcaatt      5220
     agcgactctg atgcaacatg catctaatgc agaaaaaata acttttaaat tcaatcctcc      5280
     ttcggctcca cacttcggcg gagtgtggga aattcaaatc aaggcagcta aatctcattt      5340
     gttacgtatc gttggtgatc aggtccttac ttttgaagaa ctcacaactc tgttcactca      5400
     agtcgaagcc gttatgaatt ctcgaccgtt gtacccgatt agctcagatc ctaacgatct      5460
     aacagctttg accccaggtc acttcctcac attagaacct ttaaccactg tccctgatga      5520
     agatctatcg caagtcaata ctaatcggct tcaccggtgg cagctgttac aatcgtttca      5580
     tcagaatttc tggtccagat ggaaaaacga atatcttaac tctttaacgc aacgtgccaa      5640
     atggaccaga gattccaaac cattacaagt aggttcgatg gtgataatca aggacgacaa      5700
     tcgtgcgcca ttacattggc ctcttgctcg tgtggtagat ctcttacctg gatctgatgg      5760
     ggtagttcgg atcgcagttg ttaaaaccgc aaataatcat ataatacaac gaccgttggt      5820
     gaagctatgc ccactgccca tagcttaaaa tcgtttaatt taattcttga catagcttta      5880
     atttatcttt caattttagt tttaatttaa cgtaccgtta ttaaagtttt agttcatgtt      5940
     ataattttat cgttctttaa ccagaaaatg ccatagccat tttggtgggc ggga            5994
//
ID   BEL-8_SpEx-LTR repbase;    DNA;    INV; 464 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-464
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6879-6879 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 464 BP; 111 A; 120 C; 96 G; 137 T; 0 other;
     tgttccgtca tcatacaaac taaacgtaat tctccaaatt caagtaatcg atgttcaatg        60
     ctccatcagt ttgcaacagc gaaacgcaga ccctatatag tctgtggtgc gtaccgtgac       120
     tcgtaaaagt tggagcaacg acattcactt ttcaaaagcc gtgtgtgaga acatctcctt       180
     tcgcgctcaa cgtctcttat ccgaatcctg aacaaatcac cgcgatcttt ctcactcgcg       240
     cgtgactctt aaactcgcat cccggaattc ctgtgttcct gcccttggaa tcatcgaagg       300
     tggaaggctc aacgtgtgtc gtagcagtcc aaggtacgtg tatgcactgt atttgctgtt       360
     gacattctgt ggagtttttg aacatcgttg tataatcgtc atcgttgtct tccctagtag       420
     cagaacgcca cccctgctat ttcggctttg gtgcgcatgc taca                        464
//
ID   BEL-8_TrNi-I repbase;    DNA;    INV; 6025 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6025
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1033-1033 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           219..5396
FT                 /product="BEL-8_TrNi-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MEVLLAYQMEVLENLKKAEKNYKKTPKERIKKPYLET
FT                 RLDNLEQLWTVFKDGHKSIIGKVTLKDKQHSYFTEDIYEEFEELYVSYKTL
FT                 LKEALQPYVASTSETSSVTPKLSAEQTVSECEVKLPRVQLPTFSGKYVEWQ
FT                 SFYDMFNSLVHTNKNLSPVQKLHYLKSNLSGEPESLLRNFSITNDNYDEAW
FT                 KQLLKRYDNKRYNCNALMRLLFTQKPVTSESSSAIRHLLDTTTTCLQSLRN
FT                 MGISTESINDAFVTYLVVSKLDPESVKQWEYKLGVLSDNLPSWTQLSEFLE
FT                 SKFRSLEMIDSNKVRTNTNTKSKSFHGSIESKRNISNVTTKCSKCKGEHYI
FT                 YNCKEFSQLSVKERQDYVKNNNLCFNCFSPSHPVIKCRNPASCKRCGRRHH
FT                 SLLHFEKEVSSESKTEDVFMQSESDKPVSTPISTNFSSRGLEPSQVLLATV
FT                 SVWAYNEYGYKQQLRGLLDQGSQASFVSESVVQLLGLSRKHVSGSVSGIGG
FT                 GSHTNVKHMVSLRVVSRHNPEVSIQVNAYVLRSVTSLLPSTELHSPDWLHL
FT                 DKIPLADPGYATPSKIDILLGAEVYSEILLDGIVRHNKILAQNTTLGWVLS
FT                 GRVSKNSTSADNGIITMHLHLSGEELLRKFWEMENEPNLIQKKMTDTEKQC
FT                 EEFYDKTTTRDKEGRFIVKLPFDKEDPECQYGKSVIIATRRYEYLERKLQQ
FT                 DPTLKETYNNVLQEYLTMNHMTPIKKEDVDNPKAVYLPHHAVVRQDKDTSK
FT                 VRVVFDGSCKGLNNFSLNDNLMVGPKLQQDLRHILMRWRSHRICIVADIVK
FT                 MFRMVKVNSEDTDFQRIVWRPQANEPLQHFKLLRVTFGTACAPYLAVKTLQ
FT                 RLADEEHARFPTASSITKRDFYIDDLLTGCETLPEAVHIYNEMNKLMNSGG
FT                 FELQKFSSNNQDLLTHIGKDNHSSDDSFRLKSSAVMKVLGLKWHKNIDCFQ
FT                 YSLELPDVTQPVTKRQVLSDVARLYDPLGWIAPVIIKAKIFIQKLWKSKLD
FT                 WDDVLTTDLTNEWSQFRESLIYLHNINIPRWYCFSPGSKVELHAFGDASKV
FT                 AYGAAVYIRVINNNNEICVSLVSAKSKVAPIEKEISIPRLELCGAALAAKL
FT                 LFEVSQIMNIPKDNWYAWSDSTIVLAWLRGGSSRWTTFVSNRVSEILNILD
FT                 YSQWNHVTTDLNPADCVSRGIATQDLPEHSLWWSGPSWLSQSTTEFDNSVI
FT                 IEDTHEEEKHTSLTVLPVLENKFIWTMFSSLSKTLKAISYWRRVLQNLRLP
FT                 KEKQQSYTNVITPAEKDKSLIVCIKQVQEENFSEEIKQLKLKKFVPKKSKL
FT                 RTLCPIFDENGILRVGGRIDESEVIYDTKHPIVMPAKSHLTKLIISDAHHK
FT                 TFHGGPQAMLCYLKTKYWILRAKELVKSHYRSCIKCLRYSKSKSNQLMGQI
FT                 PEVRLKPTRPFKSSGCDYMGPISVRFSPGRGSKSYKGYICLFICMVTRAIH
FT                 LEVVTDLTSKAFIAAFKRFTARRGHCQDLFSDNGTNFVGANKQLREMFDRA
FT                 KSSVPREIEELLSLEHTTWHFIPPNSPNFGGLWEAGVRSVKTHLYKVIGDS
FT                 TLTYEELSTVLAQVEACLNSRPITVMSDDPNEPQALTPGHFLIGEPLISIP
FT                 DEDNSNHNVVGLDRWRLTQKIVNNFWKRWYREYLVNLNQRYKWNTKRSEPE
FT                 VGDIVILRDDNIPPAKWILGKITKKYLGPDNIARVVSVKCKNGEFKRPISK
FT                 LCLLPK"
XX
SQ   Sequence 6025 BP; 1992 A; 999 C; 1216 G; 1818 T; 0 other;
     tatggtccaa accgagccgg attttatcaa gtcgattcca atgaccacgt gcgtcgtcgg        60
     cactgcgaga acaatagcat gccagagtgg attatctttg ctaacatcgt gcgagtaact       120
     aataaatcat tagcaaaata atcattcaaa tctatataaa tttgtttgga ttttggagtt       180
     tcaacgtctt tcttcgtctc tctacacatt ttcacaccat ggaagtgctt ctggcatatc       240
     aaatggaagt gctggaaaac ctgaagaagg cagaaaaaaa ctataaaaag acaccgaaag       300
     aacggattaa aaaaccatat ttggaaacca gattggacaa tttggagcaa ctgtggacag       360
     tgtttaaaga tggccacaag tctattatag gcaaggtgac cttgaaggac aaacagcatt       420
     catacttcac ggaagatata tatgaagagt tcgaggaatt atatgtatca tacaaaactt       480
     tattgaaaga agccctgcag ccttatgtcg cgtcaacgag tgaaacttcg tccgtaacac       540
     caaaattaag tgctgaacaa acggtcagtg agtgcgaggt gaaattaccg cgtgtgcagt       600
     tacctacatt tagtggtaaa tatgttgagt ggcaatcgtt ttacgatatg tttaattcgc       660
     ttgttcatac caataagaat ctgtctccgg tgcaaaaatt acattatctt aaaagtaatt       720
     tatcaggtga gccggaaagt ttgttacgta atttttctat cactaatgat aattatgacg       780
     aagcttggaa acagttactt aaacgttatg ataataagcg ttataattgt aatgcactta       840
     tgagattatt gtttacacaa aaaccggtta ctagcgaatc ttctagcgcc attagacatt       900
     tattggatac aactacaact tgtttacaat ctttgcgtaa tatgggtatt agtaccgagt       960
     caattaacga tgcgtttgtt acttatttag tggtttctaa attagatcct gaatccgtaa      1020
     agcagtggga atataagtta ggtgtactta gtgacaactt accgtcatgg acacaattat      1080
     ctgagttttt ggaatcgaaa tttaggtcgt tggagatgat cgattcgaac aaggtacgta      1140
     ccaatactaa cacaaagtcg aagtcttttc atggatctat tgaaagtaaa aggaatattt      1200
     ctaacgtaac tactaaatgt tctaagtgta aaggtgaaca ctatatatat aattgcaagg      1260
     aatttagtca acttagtgta aaggaaaggc aagattatgt taagaacaat aacttgtgtt      1320
     ttaattgttt ctctccatct catccagtta ttaaatgtcg caatccagca agttgcaagc      1380
     gatgtggcag gaggcaccat tcattattac attttgaaaa ggaagtgagc agtgaatcaa      1440
     agactgagga tgtttttatg cagagtgagt cagacaaacc cgtgagtaca cctatttcaa      1500
     caaatttttc gagtagaggt ttagaaccga gtcaagtttt gttagctact gtgtctgttt      1560
     gggcgtacaa tgagtacggg tacaaacaac agttaagagg attattagat caagggtcgc      1620
     aagcgtcttt tgttagcgag tcagttgttc aattgcttgg actttcccgt aaacatgtta      1680
     gcggttcggt ttccggtata ggtggcggta gccacacgaa tgtcaagcac atggtttctc      1740
     ttcgagtggt atcacgtcat aaccctgagg tttcaatcca agtaaatgca tatgttttgc      1800
     gatctgttac gtcattgctt ccttcaaccg agttacattc acctgattgg ctacatttag      1860
     ataaaatacc gctagccgat ccaggttacg ccacacctag taaaattgat attcttcttg      1920
     gagcagaagt atacagcgag attttattgg atggtattgt gcgtcacaat aaaatattgg      1980
     cacaaaacac taccctaggt tgggtattat cagggagggt gtcaaaaaat tcaacttctg      2040
     ctgataatgg aataatcacc atgcatttac acttaagtgg agaagaactg cttagaaaat      2100
     tttgggaaat ggaaaatgag cccaacctga tacagaagaa gatgacagac acagaaaaac      2160
     aatgtgaaga attttatgac aaaacaacaa cacgagataa agaaggaaga tttatagtta      2220
     aattaccttt tgataaagaa gatccagagt gtcaatatgg aaaatcagta ataatagcta      2280
     caagaagata tgagtattta gaaaggaaat tacagcaaga tcctacccta aaggaaacat      2340
     ataacaatgt tctacaagaa tatcttacaa tgaatcatat gacaccaata aaaaaagaag      2400
     acgtagataa tcccaaagca gtttatctcc ctcaccacgc cgtggttcga caagataaag      2460
     acacctcaaa agtgagagta gttttcgatg ggtcatgtaa aggattaaac aacttttcgc      2520
     ttaatgataa tctgatggtg ggtcccaagt tacaacagga tttgagacac attctaatgc      2580
     gttggagaag ccacaggata tgcatagtag cagatatcgt taagatgttt agaatggtga      2640
     aagtcaattc tgaggacaca gactttcaaa gaattgtatg gagaccacaa gcaaacgagc      2700
     cgttacaaca tttcaaatta ttgcgagtga cctttggtac tgcgtgcgca ccatatttgg      2760
     ctgtaaaaac ccttcaaagg ttagctgatg aagaacatgc aagatttcct actgcatcaa      2820
     gtattacaaa gagggacttc tatattgacg atctcttgac tggctgtgag acactaccag      2880
     aggctgtaca catatataat gaaatgaaca agttgatgaa cagtggcggc tttgaactgc      2940
     aaaagtttag tagcaataat caagacttat tgacacatat aggaaaggac aatcacagta      3000
     gcgacgattc atttagatta aaatcaagcg ctgtcatgaa ggtattaggc ttaaaatggc      3060
     ataagaacat agactgtttt cagtattcac tagaattacc agacgttaca caacctgtta      3120
     ctaaacggca ggtattgtcg gatgtggccc gactgtacga cccattagga tggattgcgc      3180
     ccgtgatcat caaggcaaaa atatttatcc aaaagctgtg gaagtcgaag cttgattggg      3240
     acgatgtact gactacagat ttaacgaatg aatggtcaca atttagagaa agtttgatat      3300
     atttacataa tataaacata ccacgatggt attgttttag tccagggtca aaggttgagt      3360
     tgcatgcatt tggtgatgct tcaaaggtag cgtatggcgc tgctgtttac attcgtgtta      3420
     ttaataataa caacgaaatc tgtgtaagtt tggtatcagc aaaaagcaaa gtggccccta      3480
     ttgagaagga gatatcaatt cctagattgg aactatgtgg tgcagctcta gcagcaaaat      3540
     tattatttga agtttcacaa ataatgaaca ttccgaagga caactggtat gcgtggtccg      3600
     actcaacaat agttctagcc tggctaagag gcgggtctag ccgctggact acctttgtga      3660
     gtaatcgtgt gtcggaaatt cttaatattt tagactacag tcaatggaat catgttacaa      3720
     ctgatttgaa cccagctgac tgtgtttcaa gaggcatagc aacacaggat ttacctgaac      3780
     attcattatg gtggtcagga ccttcttggc tttcgcaatc aactacagag tttgataact      3840
     ctgtcattat cgaggacact catgaagaag aaaaacacac atctttaact gttttacctg      3900
     tattggagaa taaattcatc tggactatgt tttcatcact gtctaaaacc ttaaaagcta      3960
     tatcttattg gagaagggtt ttacagaatt taagactacc aaaggaaaaa caacaatcat      4020
     atacaaatgt tataacacct gcggagaaag ataagagttt aattgtatgc atcaaacaag      4080
     ttcaagaaga aaattttagt gaagagataa aacagttaaa gttgaagaaa ttcgtcccca      4140
     agaaaagtaa gctccgcact ctttgtccca tttttgatga aaatgggata ctaagagttg      4200
     gcggtcgtat tgatgagtca gaagtaattt atgatacaaa gcatcccatc gttatgcctg      4260
     ctaagagtca tcttaccaag cttataatta gtgatgctca tcataaaacc tttcacggtg      4320
     gacctcaagc tatgttgtgt tatttaaaaa cgaaatattg gatattgcga gcgaaagaat      4380
     tagttaaaag tcattacaga tcgtgtatta aatgtttgag atattccaag tctaaaagca      4440
     accaactgat gggtcaaatt ccagaagtta ggttgaaacc aaccagacct tttaaatcgt      4500
     ccggttgtga ctacatggga cctattagtg tgagattctc acctggtaga ggatcgaaat      4560
     cctataaagg atatatttgt ttatttattt gcatggttac tcgagccatt catttggaag      4620
     tagtaacaga tctgacatca aaggcgttca ttgcagcgtt taaacgtttc acagcacgga      4680
     gaggtcactg tcaagatttg tttagtgaca acggcactaa ttttgttggt gccaacaaac      4740
     agcttcgtga gatgttcgat cgtgctaagt catctgtgcc acgtgaaatt gaggagttat      4800
     tgagcttaga gcatacaaca tggcatttta ttcctccaaa ttcccctaat tttggaggtc      4860
     tctgggaagc tggagttcgc agcgtaaaaa cacatttata caaggtaatc ggagatagca      4920
     cacttaccta tgaggagctg tctactgttt tagctcaggt cgaggcctgt cttaattctc      4980
     ggccaataac agtaatgagt gatgacccta acgaacctca agctttaaca ccgggacatt      5040
     tcctcatagg tgaaccattg ataagtatcc ccgacgaaga taattctaat cataatgtag      5100
     taggtctgga tagatggaga ttaacacaaa aaattgtaaa taacttttgg aagcgttggt      5160
     atagggagta tttggttaat cttaatcagc gatataaatg gaacactaaa agatccgaac      5220
     ctgaagttgg tgacatagta attttaagag acgataatat cccacctgct aaatggattt      5280
     taggaaaaat aactaaaaaa tatttagggc cagacaatat cgcacgtgtt gtatccgtta      5340
     aatgtaaaaa tggcgaattc aaacgtccca ttagtaaatt atgtttacta cctaagtaaa      5400
     attattgttt actcactatt gatgttaact tactaagcta taatgttata atgtagatat      5460
     ctaagtacct tcttaccagt tattaagaac cattattgta taaacgaaca aatattaata      5520
     tacatattgt attttgttac gttaatcttt atgttacgaa catttgctat ggtaggtttg      5580
     tatagaatac aaacagggat ttgtattttt tcttttgttt gttgttaaca tttgtcgctt      5640
     aaatgtttta cattgataat taaagagtga aaccccacct aattattgtc gcataagtat      5700
     tattcataaa gtagaagcat attctgtcta ttgtatttgc tctgtttaag tatgcattta      5760
     gtaagtaagg actaagtgga gttatcattt tgtatcacgg tgggcggggt tcactgatct      5820
     ttataaaatt gtttagaact taagatatgt gaagatatat tttatatgcg tgttattttt      5880
     aagtattgca tttaagtact caacatacac actttgatgt ttcaatagct taattttgta      5940
     ctcagacttt gtttcgattt ttattttgta tacctataca actgttttta ggtttgtaaa      6000
     gtactacgtc ctttggtggg cggta                                            6025
//
ID   BEL-8_TrNi-LTR repbase;    DNA;    INV; 246 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-8_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-246
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1043-1043 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 246 BP; 86 A; 43 C; 35 G; 82 T; 0 other;
     tgtttaaata gattaagttc atagttcata catcaaatca gattcaatct ttcacgtgca        60
     cagacattcg gtcacacaca ttcaaattac attcatacag ttcactcatc taagtatcgt       120
     aggatatgac atgtgtccgt gttaaaataa atgttctcag aggaaagacg tatttttaat       180
     taagagttta gttttcaaat tttcaccaaa caagccaaga ttatatagat cttatcgtcg       240
     tgaaca                                                                  246
//
ID   BEL-900_AA-I repbase;    DNA;    INV; 7755 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-900_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7755
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7755
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7755 BP; 2130 A; 1815 C; 1787 G; 2023 T; 0 other;
     ttttggtcct tcgagccgga tctgtgtgaa acggacactt gaaatcggtt gttgtccgat        60
     ataattcgga actgtactgt gtggtgctgg ctgctgtttg gtggtgcagt gaaacaaaca       120
     aacagactat aagtgcgcga aggccgtcgg caataaattt gcacggctcg gaagattgaa       180
     gtggaattcc cgccggcgtt tatatttcgt gggaggaaag gctgcctgga ttcatccggc       240
     tttgtgtgtc acggcgccat cgcaaggagg acattttgga cgacgagtag cagaaaggat       300
     tatagacacc atcgtcaagg ctgagacagc tctacaaggg acggacatct tgatacgttg       360
     ggaagtataa gtgcatgtat ggtggaatcg catgttggct aattggtggc aataaattca       420
     ttaaaagtgc atgcgagttg cttcttattt tggagctttt ccctgaggtt tccgttagca       480
     gtggttggtc tcggtgtccg ctggatttgt tggttgtttg gtcctctttg gttgatcccc       540
     ctcgctgctg tcttatagtc gttgagcagt caatctgtct cgcgaggtcg cgataattgt       600
     ggaacgtcga gtcgatcgcg tgtgtttagg tgctagtgaa agtgttgtgc agtgtatgat       660
     ttaaggatta gttgcgatta atcgctgttc agtgcagtgt tcaaattctc tagcaatggc       720
     tgaccttcgc gcccttgcta aaagtgagcg acgtctgatg aatacgttgg acggattgga       780
     gaaatttgtg aagaagtatg accctgttga ggacgaaaat cagattgctg tgcgactgga       840
     atccttggag acgatttgca aagagtttta tgctatccgt gaacggttag aactgttgac       900
     cgacgaagcc gctgaattag aggacgacaa ggatattcaa gaacgtgaaa aaaccaactt       960
     acaggcgttg agcgatttcg agtatcgata tttccgtttg aaagccagtt taacttcgaa      1020
     ccgtgtttcc caaccatcta cctcgaccca atgcaatggt caaccttgcg accgatttga      1080
     accctccttt tcgaaagtga aactaccaga aattcgtctt ccgtcgttcg atgggaagat      1140
     aaaggagtgg gtcacatttc gagacagctt ttgcagttta atccatgaaa ataggcagct      1200
     taccgatatt gacagattca gctacttaaa gtcggcttta accggagatg ccttgcagga      1260
     aatcgaacca gtggagctct cggcggcaaa ctacagtgta gcatggaaag ccctggaatc      1320
     tcgctatgag aacaaaaagc tgatagtaaa ggcctacctc gacacaatat tcgctgcgga      1380
     aggattgaaa cgtgaaagct acgatggttt gagtaatctc atcagcgttt ttgagaaaaa      1440
     cctgcagatg ttgcaaaaga tcggtgaaga tacagctgcg tggagtacga tactggcgta      1500
     catggtgtat tcccgactgg atcctgctac gctgcggctg tgggaaacac atcacaattc      1560
     aaatcaagtg ccaacttatc agaatttgat cgctttcctt cgcagtcact gtgcagtgtt      1620
     acaatccgtc gctcctatga gcataacatc tagcaactcc gattcccgtt cgacgaagtc      1680
     ttctgtgtgt cataccacca ttaaatcgtc aaaaaggtgc ccgttctgtg gagaagcttg      1740
     gcattctgct ttcatctgtg gtgtattcca acggttgcaa gttcccgagc gatgtgaagc      1800
     ggttttcaag gctaaattat gtcgtaattg tctaagcctt ggtcattggg cccgaaattg      1860
     cgagaaaggt gtctgtcatc actgccaaca gaaacatcac actcttttgc atggtgcacc      1920
     cataagatcc tccgttccac agtcgcagtc aaatcctccg actcaaacaa gacaacaacc      1980
     tcaattccag tcaacaaacc cgacctcatt gacacatgat gctgacaatc ctacaacctc      2040
     caactcgcaa caacagagca ctcagtcttc agccacatcc accactcaga cacacattgc      2100
     acttccaatt actcccacac acaatattct gctgtcaacc gcccttgtaa aaattgaaga      2160
     tcgtcacggt aataccatgt tggcacgagc gctgctggac tcgtgttctc aacactgtct      2220
     aatgacgaag gaattctcca gtagaatgaa ttttcgagcg tcaccatcat atctttccat      2280
     tcaaggaatt ggttcgtcga ctagtacttc gacgaggctt gtcagcgcag tagtctacgc      2340
     gagactagaa gatatttcga ctttctcgca ggaaatgcac ttccacgttc tccctcgatt      2400
     aactgtgtcc ctaccgacgg caagttgtga tatcagagaa tggaatcttc ctgaattcct      2460
     cgctgatcct cgtttccacg agccaggtcc tgtagacgtt atcatcggag cagaatacta      2520
     catggacctt ctgcggactc aacaatgtaa ggcaactgaa gatgggccta cgttgcagaa      2580
     caccgaattt ggttggattg tatctggaag gattcccgat cactcatcca ataaaccaca      2640
     atctgttgca cttgtttgtt ccacggtcga tcttcaagaa caacttacga agttttggga      2700
     cttagagacc tgccgaagtc atagcacaca gtcactggag gagtcagcat gtgaagagtt      2760
     tttcaatcgc acaactgtta gggaccaggt cggtagattc gtcgtgacct tgccaaaaaa      2820
     ggatagcgtg atcaatcggc taggttcttc ggaggccacc gctattaaaa gattaatggg      2880
     aatggaacga cgtttcgctg caaatccaga gttgaaggtg atgtacgtcg atttcattcg      2940
     tgaatatctc gctcttgggc acatgaaaga ggtcgaagag gaaattgaaa aagtaggagt      3000
     cagaaggtac ttcttaccgc accacgctgt tctcaaaccg gacagtacaa ccacaaagct      3060
     gcgtgtagta tttgatgctt catgccaaac ttcgagcgga atttccttga atgatgcact      3120
     gatggtcggc ccagtcgttc aagatgagtt atccagtatt tgccttcggt tccgaacaca      3180
     ccggattgcc gtaaacgctg atattgccaa gatgtaccgg atgattcaag tccaaccgca      3240
     agactttcct ttacaaagca tcaagtggag acaagatcca tctgagcctc tccgtacgta      3300
     tgagttgacc accgtaacgt atggcacttc gtccgcaccg tatttggcta caaaatgcct      3360
     acagcgtcta gcagaagacg gtgaattatc acatcccgtt gcttccaaag tgattaaaaa      3420
     ggacttctat gttgatgaca tgcttaccgg agttgatacg gtggaagaag gtcgtcaatt      3480
     ggtgaaagaa attatcgacc tgtcagattc agcaagcttc acgttgcgga aatggaattc      3540
     aaacagcaaa tcacttcttg aaattattcc ggagaacttg agggatgaac gaaccatcct      3600
     taaattagat tcatctggat ccacaatcaa aactttaggt ttagcgtggg aacctgacac      3660
     agacgttttc cgcttcacgt tcccttcgtt taactgggca gcgacaataa cgaagcgtat      3720
     tgtagtatcc gacgtgtccc gcctatttga tccactgggt ttggttggac cagtcatcat      3780
     ccaggccaag gattttcatc caggagttgt ggaagcaaag cagcgaatgg gataagccac      3840
     tgagtccgga attacaagcg caatggcagg aatacagacg caatctagca gggctagaaa      3900
     acctaactgt tcctcgttgg ttaggaactg gcggtcacat cgctaccacc gaacttcacg      3960
     gtttctgtga tgcatcaaat aaggcatatg gtgcctgtgt ttacgtacga accatctccg      4020
     aaacggggga ggtgtgtgtg aagttgttga cggcgaagtc acgagtcgcc ccactcgaca      4080
     acataaaaaa gggaaacaaa agactctcca ccccacgatt ggaactatca tctgcattgt      4140
     tgttagctca tctttttgat aaagtcgtaa ccagcctcgg cataaattca agaagctttt      4200
     tttggacgga ttccaccatc gtcaattgtt ggatttcatc accgccgtca aaatggaaac      4260
     aattcgttgc gaatagagtt tcggagattc agcacatcac aagggacggc gtttggaatc      4320
     acgttgctgg actggagaac ccagcagaca ttatttctcg cggaatgact cctgcacagc      4380
     tccagtataa atcgctttgg ttcagtggtc catgttggct gcgatcggat gaatgtcact      4440
     ggccatcaac tccacagatc agcgaagatg attttgatcc ggtgatttta gaagtcaaga      4500
     gcgtttcagc agcatttcct gcggtccatc caagtgatat cttcagtctc cgatcgtctt      4560
     tcagcgacct tcaacgcctc actgcttgga ttctaagatt ccgtcacaat gcacaagcag      4620
     caaaccagaa tattcgacgt aatggagctc tttcaaattc tgagctggaa gaagcgacaa      4680
     aatgtttggt tcgtctctct caacgagaaa gttttcctct ggaactatcc gatctggcta      4740
     gcggcaaaga gattagagaa tcgtcgaaga tcctagctct aaatccgcaa cttgaagacg      4800
     gaatactatg tgttggcggc cggcttcgtt acgcttcaat aacgacgcat cgcaagcatc      4860
     cgtatatact cgatcatcgt cattcgttcg cacatacgat tgtcgatcat taccatcgga      4920
     agatgttgca tggtgggcag caattgatta tttcatctgt tcgagaacgt ttctggccga      4980
     caagcgtccg aaatctggtt cgaaaggtgc tgcatgaatg tgtgccctgc ttcagggcaa      5040
     ggccaaaaat ccaggatcag attatggccg accttccgcc tgagagaatc actccttgtc      5100
     caccatttca gcgagtagga gttgactact gtggtccatt ccaggtcgct tatccgcacc      5160
     gacgcaatca tccggtgaaa atgttcgtcg ccatctacgt ctgcctagta accaaggcca      5220
     tccacttgga gctagcatcg gatttatctg ctcaaggatt cattgcgacc ttgaagcgtt      5280
     tcacttcccg gcgtggcaag ccggaattaa tcatgtgcga caatggaaga aacttcgttg      5340
     gagcgaggcg tcaattagac gagctatgcc gactgttcaa cgatcagcag tttcagttgt      5400
     ccatatccag gcaagcaaac gaggaacaga ttcactttcg cttcattcct gcaagatcgc      5460
     cgaattttgg tggactgtgg gaatcagctg ttaaatcgtt caagctactg tttaaacgaa      5520
     ctatcggcct gcgatctctc ctatatgatg agatgaatac ggttttgact caggctgaag      5580
     cagttctaaa ttcaagaccg ttaacaccac tcagcaatga cccagatgac ttcgaagcgt      5640
     tgacccccgg tcattttctg attcagcgac ccctcacggc cattccggaa cccgatttag      5700
     atgggatccc agagaatcgc ttatcagctt tccaaaaggc acagcgttac acgcatcagt      5760
     tgtggaaaaa gtggtccaag ctgtatttat cggaccttca caatcgtact aaatggactg      5820
     tcagacggag caacgtttcg ttaggaacca tggtgatctt gaaggacgaa gaacagcctc      5880
     ctctgaggtg ggcccttggg cgtgtgacag atgttcaccc aggtgaagac gggaatgtgc      5940
     gagtcgtaac cgtaatgacc aaggatggta gctaccgcag agcaatttca aaaatctgtg      6000
     tgctgccaat tcgtgacaac attgctcaac caaatgggga gaattgaatc tccttcatcg      6060
     gcggaggtcg aacctatcga cctccgcgct ccagttaagt ttatcgtaaa ttgtattttt      6120
     ccaaaaagta acccgttcat ttttcctagt cacgattcgc ccctgtcttc cgtcaccgga      6180
     acagtcttca atcgcttgcg tattcagtca cgccttgact gttaaggtaa tctgtatgat      6240
     gtcggtggtg gtctaatggt gcatgtgtag tcgtccaagc atgaataaaa ccaacggctt      6300
     tgtacgccag cgctcaggca ccaagtcagt tccgttttac attcgatacc acctttgatt      6360
     attttgagat tatacgtatc tacggtgaga agagactagc agagcaaatt ccatctccgt      6420
     gatcttcaag tggtcgtcta caaccaaagc agcttaaagg ctgtctacag gaacacagta      6480
     gctccagtac tgcccgcagt tccactctag ccaaaccatc aaatcaacgc gatcatgaga      6540
     gggtaacgat gccaaccggc atccgaggag gccacggtgg cctcctcttc agggaagtcg      6600
     tattttattt agattataaa gataaaaaag caccctctca tatgttccag tgattatacg      6660
     tccacattcc atgctaccgc gtaaacatcc tccagtttcg acgataattc accgttccag      6720
     cacgacaatt cgtagctcca gtctgttcat ccagtcagta tccttccgac atagcattgc      6780
     gacaaccaga acgtctgatc aaccaaccag tacgagattg tgagaaacgt cggtgctatt      6840
     cggcacccac ggaggccacg gtggcctccg taccagggaa gtcatttagt aatgtgatta      6900
     aatggtttaa aaagcaccct ctcatatctt tcagcgagtt tatattgaag aaatattacg      6960
     tataacacat cagtttgggg gattgctaaa tgaccatacg tcccagaaga aggcagcagt      7020
     ttcacgatag ttcatcgttc catccgatcc gatccagcct cgttgactag ttgacccgca      7080
     aattcgttgc cattcgtgat taaaacaaca attcgtatca gccaatgttc aaaaccaaaa      7140
     ccatactgaa cctggaaagg aaaccatcag tcaactctaa gataaatctt cggcagccat      7200
     cgatgccaat ggaataaaaa cagtgccacc cggcacttgc ggaggtcatt atggcctccg      7260
     ctccaggcaa gtcgcttaaa tttgtgatta taaaggtaaa aaagcaccct ttcatttttt      7320
     acagcgactt cgcctgcgta accgacagca ttgaaggtgt aatttggaca tctattcaat      7380
     tcccatcact acttaccagc tgatactgta tccaatcccg ataaccaatc gaagaagttc      7440
     gccacccacc attcgcatca gtaacagcag tagaagatcg aaaaccaaga agaacagtga      7500
     aatgtaggtc aagtttgttg acaaacaatc cagcagcagc aagtaggtca gcagtgtaat      7560
     gatcggcgta tcatcgaaat tgtaaacaag ctgatggcat ctacattcac tttcacacgt      7620
     aaactgatag ggaattaatt tgtagtagta gggcctatat tatatctctc tgatcatgac      7680
     aaatgataat catgcgtagg caaaaataag agagcaaatt gattggaatt gagaattcca      7740
     atggcggccg gcata                                                       7755
//
ID   BEL-900_AA-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.10, Created)
DT   17-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-900_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-362
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-362
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3029-3029 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 362 BP; 100 A; 57 C; 91 G; 114 T; 0 other;
     tgttagagcg agaagaagaa tcatcgaatc atatttttta cctgggcatc cctagtgtga        60
     agatttctct gccggtgcgc tctggttatt agctagtgat cgttccctat tttgtgattg       120
     tgagattgtg tgtttatata aaatgtagta catagagata tatgttaggg tagaaaagca       180
     gagatcagga gaagtaaatt agttatcaaa taaaccgtcg cggaggaaac atctcctcgt       240
     tcatttcgtt acgatcggaa taaagtagtt cttttggtgt tcgcgtttaa taaagtgttt       300
     ccgttgcaat tgcgcgagtt tgtaatcgag tgtccgaaag aagtccgcga cgggcgcgaa       360
     ca                                                                      362
//
ID   BEL-901_AA-I repbase;    DNA;    INV; 6659 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 26.08, Created)
DT   17-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-901_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6659
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6659
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6659 BP; 1691 A; 1750 C; 1553 G; 1665 T; 0 other;
     taaaatctgg tgccgtgacc aggatcgtcg ataccgtccg ggatccagca tccgtagagg        60
     cacgtgagac gatccactgg gcgctgtcat attgccgtcg ccataccggt ggacgcaaat       120
     tgaatagttc aaggctcgat cattcgggca gcaggtaatt ggctgtccat cttttgctgt       180
     gcggcccccc gggtacgctt tagatctctg ttccctcttt gcatgtaact tctcgtcgtt       240
     actggcgatt tccgattgct gccaagccgt ttggagcaca ccaggaggac gatagccggt       300
     ggactacccg agccggtaga taccgccatt acagttcggc cattctgcgc catagaagaa       360
     aggggcttct acccaagcca agccactccg ccattgcaat ccggcgggct tcgagaagta       420
     tcgacgcttc attccatcga cgccattccg ggatttctat tggattttcg ttcctgtcct       480
     cgcatcgccg ttcaacatag ggtagcggcg cctgatacgt tccgtttgaa taattcattc       540
     aaggcattca cttgccttgg aatcggtgag taccattcca agaagattaa agcgtttttg       600
     ccgggtctac cgtggtctct ctgtttgcca gatccctcaa cctgcaatcc acttcgtcac       660
     cagcgttcat gatggcgctt cagcagctca aagccacgtt gatctcgagg aggaccacca       720
     tgatcgatgc actgggtcgg gcagaggcat tcctggaatc ctacgatgaa cagcgggacc       780
     agacgcaggt gcccatccgg agtacctaaa caagaagatt aaagcgtttt tgccgggtct       840
     accgtggtct ctctgtttgc cagatccctc aacctgcaat ccacttcgtc accagcgttc       900
     atgatggcgc ttcagcagct caaagccacg ttgatctcga ggaggaccac catgatcgat       960
     gcactgggtc gggcagaggc attcctggaa tcctacgatg aacagcggga ccagacgcag      1020
     gtgcccatcc ggagtaccta aacaagaaga ttaaagcgtt tttgccgggt ctaccgtggt      1080
     ctctctgttt gccagatccc tcaacctgca atccacttcg tcaccagcgt tcatgatggc      1140
     gcttcagcag ctcaaagcca cgttgatctc gaggaggacc accatgatcg atgcactggg      1200
     tcgggcagag gcattcctgg aatcctacga tgaacagcgg gaccagacgc aggtgcccat      1260
     ctggagtacc taaacagcat gtgggcgact ctagaagaaa ttcaagggca actggaggac      1320
     acggaagaaa ctgaggaagg taggcaaatt catcgtgacg tccgtgcgaa ttttgagcct      1380
     cggctatttc gaataaaagc cgatttgatc tctaaagttt ctgttcttaa tcaaaacgct      1440
     cgcatccctg aatctgttcc gcatgtttcc gctctctgtg gtctgaagct cccgacgatt      1500
     tctcttcccg aatttgatgg ggactatatg cagtggctag ggttccacga cacattcttg      1560
     gcattgattc actctaaccc cgacgttcca gcgattcaaa aattccatta tttaaaagcc      1620
     gctttgaagg gtgaggcggc acagttgatc gaatcaatcg caatcagttc tgcaaattac      1680
     aatttggcct ggcaaactct cgtcgacaga tacgccaacg attatctctt gaaaaaacgt      1740
     catcttcaag ctctttttga tattcagtca gcgaaaaggg agacagctgc ctcgttacac      1800
     gcattggtgg atgagtttca gcgccacact aaggttttgg gccagttagg agaaccaacc      1860
     gataattgga gtagtatttt ggagcattta ctttgtacca agcttcctga tgagacacta      1920
     aaagcttggg aggatcacgc gtcgaccagc aacgatccca actacgcctg cttgatcgat      1980
     tttctacagc gtcgaatgcg tgttctggaa tctattctag taaaccatca tcagtcgcca      2040
     tctgcctcgt atggctcttc tcacgcttcc aaaaagcctt ctcactttcg cctttcatcc      2100
     catgcttcca catcgtacgc caacagcaag tgtccggcat gcaaccagga acatccttta      2160
     atgaaatgtg ccaaattcaa ccgtctttcc cattccgaac gacagcaact cgtctcatca      2220
     aagcgtctat gtcacaattg cttaaaaggg gaccacatcg ttcgtaattg cccatcaaac      2280
     ttcagctgca agcactgcaa caggcggcac cacagcctgc tgcattccgg tgattcttcg      2340
     agaccttctc atgattcgtc ttccactcgt acttccatgt cgactcaagc agtccagtct      2400
     accaatcact ctgctgtaga atcaattgct aaatcgaccg tcgctgctac tgaaagtatt      2460
     tctcgagttg tcgctaatgc ctccgcttcg caatctcgtg aggatgtctt cctactgacg      2520
     gtattggtga aggtagtcga tgcgtacggt caggaccacc ttgctcgtgc ccttcttgac      2580
     agcgcgtctc aaccgaacct cataacagat cgccttgcac gcaggttaca cctacggaga      2640
     gatcctgtga acattaccat ccaaggggcc ggcaatttgt ctaagagggt tcgtgagtcc      2700
     atatatgccc gtataaaatc gagaaacgac aatttcgaat gcggcgtaga atttctgttg      2760
     atggacacag tcactgcaga tcttccagct aaggacttcc cagtgaaaga ttggcagatt      2820
     ccgaaaaatt tgcatttggc ggacccctcg ttcaataaga gtcagcaaat cgacatggtt      2880
     ctgggtgcaa agcatttcca ctcgtttttc ccaagtactg cacgccttca actggccgat      2940
     aatctcccag ttctgatgga tagcgtattc ggttgggtgg ttacaggatc cgctagtaca      3000
     gttgatatca ccaaacaacg atctgatgag aacagcattg tggcagtttc gatgatgaca      3060
     ctcgaggaaa gtgtggagcg attctggaaa actgaggcgt taactatcgg tgataattac      3120
     tccatcgagg agcgtcactg tgagactttc tatcaatcta cgacgattag ggatgacatg      3180
     ggtcgttaca ttgttcgcct accacggaaa cctgatttcg atgcaatgct tggagagtca      3240
     aagggcagtg ctctacgacg ttacgatcag ctagaacgac gattagatcg agatcataaa      3300
     ttgaaagaag actaccataa cttcatgaag gagtacctct ccctcggcca catgcggctg      3360
     gtcgagacgg acgacggaca gagctcccat aactattatc tgcctcacca tcctgtgata      3420
     aaggaagaaa gcacgactac taaggtcaga gtcgtattcg acggctccgc tcgtacttct      3480
     accggcttct cattgaatga agcattatgt gtgggcccgg tggtacaaga agatcttctt      3540
     tcaatcgttc tacgtttcct tacctatcca gtagcccttg tcggggacat cgccaaaatg      3600
     tatagacaag tccttttgca tcccgatgat tgctctctcc agcgtatcct attccgtttt      3660
     gatagaaata ctcctattca gacgtatgaa ctacgcaccg tcacctatgg tcttgctccg      3720
     tcatcttttc tggccactcg tacgctccaa cagcttgcag tagacgaagg tgacaagtat      3780
     ccgcttgctg gcccaacgat atgtaagagc ttctatgtgg atgactacat tggaggagct      3840
     gattcgatcg aagaagctat ccagcttcgg ggggagcttt ctgagctact cactaaagga      3900
     ggtttcgaat tgaggaaatg gacctcaaat cgacttgaag ttcttcaagg gctcaaaaac      3960
     gaccaaattg gaacgcaatc aagtttgcaa ttcagcccta acgaaactat aaagaccctg      4020
     ggaattcgct gggagccaga aacggaccag ctccgctttg attcgcaaat tcaatcacga      4080
     aatgatccac ctacgaaaag atccatctta tccgatattg ccagactgtt cgatcccctt      4140
     ggattaattg caccaattgt catgaaagca aaaatcatca tgcaggaact gtggacgttg      4200
     gcttgcgatt gggacgatcc ggtgcctaac accatacgag taaagtggga acaatttcga      4260
     catgagctac caaaaatcgc cgtttaccgt atcgaccgtt acgccctgct tccgaagtcc      4320
     agcgtgcagc ttcacacctt cgccgatgcc tctacgtttg cgtacggagc ctgtacttac      4380
     gttcggtgtg aagattctcg aggaactgta aaaatacgat tactcgcttc gaaaagtaag      4440
     gtcgctccct tgaaacgact atcgattgca cgcctggagt tatgtgcatg cgtactagca      4500
     gctcatctac accatcgtgt gaaggaatcc atcggcgtac acgtgacagc gtcgtatttc      4560
     tggtccgact cagcagtctg tctttactgg attcgcgcgc caccgagcac gtggaagaca      4620
     tttgtggcca atagggtctc tgaagtccag cattacactc acggcggccg atggaaccac      4680
     atctctggat cggaaaaccc tgcggatttg gtgtcacgtg gaatgtcggt tgatgaattc      4740
     attggcaacg atgattggaa gcatggacca gcttggctag cgaatcccca acaagaatgg      4800
     ccgatctcaa acccagcggg tgtacctgag gaagacatgg aggaaaaatc agtcgtcgtt      4860
     tctgttcaaa tcacgcccag catcaattcg gttttcctgc ggtggtcatc ttatacacgg      4920
     ttgctccata cgattgcata ctgcctccgg tttgctgcta gaacccgttc aaaggccaga      4980
     acacagctac ctgcctctcc ccaagagaat cgtcttgaag tacttaccgt tcaggagctt      5040
     gcttgtgcca atgccgtcct tattcgtttg gcccaacaag atgcttttaa gccagagatt      5100
     agagagctag agcgcggaaa tccggtctcg aagcagtcag ctactcgacg tctacatccg      5160
     ttcctagata gcgagggtat attgcgagtt ggaggtcgac tcaacctttc tcagttgcct      5220
     taccagtcga agcatcctgt cctgcttccg aaacagcatc cgttctctcg attgatctgt      5280
     gaacactatc accgtcaact tctccacggc ggcgggcgtc ttctgttgtc cacaatgcgt      5340
     gaagaatact ggcctctcaa cggcagaaat ctggtcaaaa gtgtcgtccg aaactgcttc      5400
     cgctgtatac accatcgtcc tattcttgct cagcagcaaa ttgggcaatt gccagcctcc      5460
     agagttgtcc aaagtcgtcc attttcggtc acaggtgtag attacgccgg tccgttgtat      5520
     ttgaagccaa tccacaaacg cgctgcatcc gcgaaggctt acctggcagt atttgtatgc      5580
     tttgccacca aagctgtcca tctggagctg gttggagatt tgtccacaca aggattccta      5640
     gccgccctac gaagattcat ttcaagacga ggaatgccaa accatatcca ttcggataat      5700
     ggtaaaaact ttgagggaga aaagggggaa ttagcggaac tctttgaaag attcaatagc      5760
     gacaaggaac aggccgaaat cgcctcggca tgcgccctaa agggaataac ttggcacttg      5820
     actccccaaa aggcaccaca tttcggcggc ctttgggaag cggcggtcaa gactgccaaa      5880
     aaacatttat tcaggcaatt agggaacact cgcctttctt tcgaaggcta ttacacaatt      5940
     ctcgcacaaa ttgaagcagc catgaactcg cgcccactgt tgcccatgtc cgatgatcca      6000
     aatgacttgg cagcactaac gccggcgcac ttcctcgttg gagcctcgat gtccgccttg      6060
     cccgacccag actatcagca tcaaccgatc agcgccctcg gaatgtacca aaattggcag      6120
     ctactggtcc aacgtttctg gagtcactgg aagaaggagt acttgcagga gatgatccgg      6180
     gataccaaat atgcggcccg caataacgag atccaacccg gccgtatggt catcctcgca      6240
     gatgaatcgc taccagcaat ccgttggcct cttgcccgca tcatcgcagt gcatcctgga      6300
     agggataata taccccgtgt tgttacccta cgaaccgcaa aaggaataat cacacgtacc      6360
     ttcaacaaaa tttgtttgct gccccagcca acttcacccg agaacgaaca tcaaaatacg      6420
     gcctcatcca gcctggagtc gcatcccgcg gctagtcctg atgacgatcg acgagacgaa      6480
     caaccaactg ttgcagttcc tgaatcctga gaagatgttt cgcctgtaaa tagaagaaaa      6540
     aacctatccc aattgagaaa atcatactta cctgtaatgt gaatgtagct agatttgttt      6600
     tgttttgatg ttttttgttg acgtttgttg aacgacataa tcattcaagg cggcgggta       6659
//
ID   BEL-901_AA-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 26.08, Created)
DT   17-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-901_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-521
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-521
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4556-4556 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 521 BP; 153 A; 105 C; 114 G; 149 T; 0 other;
     tgttgaaaca ttaatcaaat tgtacattcg atgaacatca cttgcatgca acttttcatc        60
     tgaacgtcat ttatagcgta taatataaca gttgtgatgc ctaggttaga ttttcgccca       120
     attaaattgg caacaatttc acgaagatgc acgaaagcaa agaacgtagg tttgaagttt       180
     ctcagattcg tcgtcagctg ttagttcgat ttgtacagtt caataaggta gatcggagta       240
     aaaataaaga aagtgaaagt ttaattctat gtagtaactc agaaaaggtt agagaataaa       300
     gtgcagtgcg agagtaaaag tacgtacctg tgtttcgctg ctccattagt agtcgtgctg       360
     gtgctgttgt atcctgtctg ctgtccgctg ctgctcccga tcgccgttgt tgctgctact       420
     atacgctggt acctggaaga gaaccccaac ctacctgtgc tgccccgtag tgcgaccgat       480
     tacccaaaaa cacaacgtag gaatttcggt aagcgccaac a                           521
//
ID   BEL-902_AA-I repbase;    DNA;    INV; 3306 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 26.08, Created)
DT   17-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-902_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3306
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3306
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3306 BP; 970 A; 711 C; 815 G; 810 T; 0 other;
     aagcttgaag aaattgcttc aaagacacca agcaatatgc cggaaaccga ccgatacgat        60
     tgtaagattt gccgtcggtc caataacgtc gataacatgg tgttttgtcc aaagtgtgaa       120
     gactggttcc attatcaatg cgttggagtg aacgacgctg tagcggacca aagttggatg       180
     tgttctacct gcttgacacg tccaatgacc aaccctttga gacaaacgag cacacctcta       240
     tttacccctg ctggattagc tgaagcgccg gggctatctg ctgttctccc accgattgtg       300
     agtactgtga cgtcagcagt gacactaaat caagtgacta ctggacacct tatgaatccg       360
     ggtcagtcaa tattgaccga acaagcacgg gaaagtctcc ggtgggttca agaacagcgg       420
     gaaatagtag aacgggaaat ggaggaaaac catcgattag aattagagcg aaaaagatta       480
     gagcttaaaa aactcaccaa caaggccatg ttggggattc tcaacaacac gagcgacgca       540
     gctacaaata gttctaacga cccagctgcc gcggtaggta gttggatgca agggatagta       600
     ggagagatgc aaaatctttc gatcgctcag gtgagcggaa taccagagaa gcaatctatc       660
     ggtcccacat ttgacatcag ttacacaccg actactgctg gagcgcgtgt gagttcgttc       720
     gatcatacgt tgtcgccaac tatccacagt atcccgatta gtgaggtgag tctgcctcaa       780
     acgacaaacc tctcgtttcc gacggttgta ccaccaaaac tgcccattaa cacacaatca       840
     gaaatcgatc actaccatca gcttggtgcg atgccaagta attcgattag ccgagcacct       900
     ccagggctgg gtatcggtaa tcaaacgaat gttgtgacag cttgttctac agttccaacg       960
     gttggtctta cttcgactcg atggggacct acaaattcat caggtggtgc gatggtgaat      1020
     aatccaccaa cagcctttgt tccgtcgact cggtatcctg gtatagcagc taatgtgaat      1080
     gcacctgtga atcaacaagc gccaggtttt ccgaatttgc ttcctagtat gaatttaaac      1140
     tatggagtaa cgagtagagg acatggctat cattcgcttc aagttccaga gtatgcagct      1200
     aatgttagta cggctggagg atttccaatt aggctcgaca atatacccgc acattcgagc      1260
     ggccataatc cgtttactgt tccgaggcat gcagttaatg ttagcgtggg aggcggacat      1320
     cccgcttatc cggataacat tctaggactt caaaggccgt atgatccaat gattcagcaa      1380
     ccagttttcc ctacacaaca tcagttgatg gctagacaag tcatgcccaa agatttacca      1440
     ttcttcagag gggatccaga agattggcct ctcttttaca gtgcatacgt aaactcgacg      1500
     atggcgtgtg ggtactcaga cgttgagaat ttggccagac tacagaaggc gttgcagggt      1560
     agagcatttg acgcagtaaa gagtcgttta ctgcttccag catgcgtgcc tcatgttttg      1620
     tctacactat acatgctcta tggtagacct gagttgataa tccaaactct tttaagcaag      1680
     gttcgagaga ctccagctcc aaaatcagat aaattggaga cacttatttc attcgggttg      1740
     acagtccaaa atctctgtga ccatctagaa gcatcagggc agctggcaca catgtgtaac      1800
     cctatgttgc tgcaggagct agtggagaag ataccggctc atcttcgttt ggactgggct      1860
     ctgtataaac ggcagtttat gacagtggac ttacgaacgt ttgcgacata catgtcaacg      1920
     ctcgtagcag cagcttctga tgttaccttc aacacagatg ctaggcagtc acaatcaggt      1980
     aaagttgacc gtggtaaaga taagaatttt ctcaatgctc attctgcagt agaaccaaca      2040
     gagaaagaat acaaggtgga aaatgtgtca ggagtggtgt gcttggcatg caacgggccc      2100
     aaccacaaag ttaaggactg tgtcattttt aagaagtggg atcctgagag ccggtggaag      2160
     atcgttaaag attgtcatct ttgccaaatg tgtttgggca agcatggaca gcggccgtgt      2220
     aaacagcaag gtaattgtgg gatagaagat tgtcagctag gacatcatcc gctgcttcac      2280
     attgcgatgc ggaagcgaca aagtccatgt gatgatgaat cgaatgcaaa aaatccaagc      2340
     ccaaacgtat tttccggaga aggagtaaat gctcaccatt caatgggagg atcaacgatg      2400
     ctgagaatca ttccagtgaa gattatgtgg cagggaaagt ccgttgagac ttttgcattt      2460
     ttagacgatg gctcgtcgat gacattaatt gagcagtcta ttgtggattg tttgggtata      2520
     gacgatggag agccgcttcc actcggccta acgtggactg gcaacataaa ccgacaggtt      2580
     ccaaactcta agcgagtttc tattaatatt tctggtctag gggacagtaa attttatgct      2640
     cttagggaca caagaacagt tacaaatctg gagcttccga ggcagacact gaagtacgga      2700
     gagttgtcac gacagcacgc ttatcttcga ggattgccca ttagcagcta cgagtcaatc      2760
     tcaccgggta tcctaatagg atcaaataat gcaaatttga ttgcaacgtt gaagttacgt      2820
     gaaggtgatt tcggcgagcc attagctgcc aagacccgtt taggttggtc tatatacgga      2880
     cctgtagcaa atgtgaaaga tacacagaag tttaactttc atattcgtga atggcacaca      2940
     ccgccacaaa ggattaccgc aagtcaggaa agtagattag aaatgaaaaa tactcgaatt      3000
     caattcgaaa aggacaatca cgtggaagtc atggaagact tcccaacgat tatgcagtat      3060
     ccaaatcaaa ccgtggagga tatgttgaag tcagtcaacg attgttcgtc ggagaaaaac      3120
     atatcgaagt caggtggaca tgttcaggct gcgaccattg gaaaggacag ccagacgctg      3180
     aagatggcgt taccaactac aacaggactg ttcaaacgat cgcggtctaa gctagcagag      3240
     ctgcagatgc aagatggtag taacgcaatc gatgacggta atgagcgtgc gttacgagcc      3300
     ggggga                                                                 3306
//
ID   BEL-902_AA-LTR repbase;    DNA;    INV; 588 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 26.08, Created)
DT   17-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-902_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-588
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-588
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4557-4557 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 588 BP; 192 A; 106 C; 111 G; 179 T; 0 other;
     tgttgccgat actggcagcg ctgctctaag tttcctaaca acgcctctgg ttgcgtgtct        60
     gcccatttgt acgtgagtga caagcaaaca tttccgcagg cgctacagtc aaatcaacta       120
     actgtcagca gtcaggtgtc aggcgatagt tacaaaatat caaaagaaga tcggaatcaa       180
     tgtttacatg tcactaaaga acgtaaaaga tttatttaga ttaatttaca attaagagtt       240
     attataacga atgcaaaact gaagagtcgg tgaattagtt ccagctgaat ttgttattaa       300
     ctagcagtaa gttgtacaat gaacttttca acttatacag tatttcaacc aattgttaat       360
     tatattaggt taacacgaac tcgattcgtt agttaaacgg atcctgagta gatccgaaac       420
     agtagttgga tttcaatctg ttcgacagtt taaggaagac caatttgtaa gtagtttgtc       480
     agcttcaatc aggtcattta ttaataaatt tgaattccag cttcaagtaa tcagcgctac       540
     taaatcccgt gcgttttctc tgaagaggtc atcgaaagaa atccaaca                    588
//
ID   BEL-903_AA-I repbase;    DNA;    INV; 6104 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-903_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6104
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6104
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6104 BP; 1682 A; 1461 C; 1536 G; 1425 T; 0 other;
     tttttggtcc ttctgaagtc ggattgtgcc tgttccggat atttgaccaa cttatcgcgc        60
     ggaaaagttg gaattcgagt gaatcgtagt gatacgaaac tgtgaaaagt acacccgact       120
     ggtgtactcg tgaatcgtgg ccgaaaaaag tgacgcaatt gcgcagtgaa aaacggcaga       180
     cagcattctc aaacgacgcc attttgaaat ttgaacgctc gacgtgaggg gagagaaaat       240
     atccgagtga tcactgtgca gtgtgattcg agaagaggac gccccgtggg gccgaattcg       300
     aagtgatttg tagaagttgt cgctcgaacg gcggagccac caccgattgt ggttgacttc       360
     ggaaaattca acttggttga attcgatcgt tgtgtttgtg aattcctgtt cgtggattag       420
     gttgatgctg aaaccgctcc acatctatgt ggaaagagac cgctatacaa gtgcgacggc       480
     aacagtgtag acgggtcatg tctgatttta gtggattcag ttgtattggt gattgctctt       540
     gaaggagcca cgacaccacg gtgtgctttg tgaatgtacc gtttgggtgc ggttttcggg       600
     cacaagtgaa ataagaacaa tgatgtacag actcaaatcg gtagtgaatg tcgtgtgata       660
     caccaatgcc gaagaaaaac aaagctgatc ctcgacggtt ggttatgcaa gaaacggaag       720
     aagaaaaaac cccgtcagtg agtgcacaaa aattgaaaat gaaagcaaaa gaagccatga       780
     agaaaacgga ggaaaaatta aaagtgatga agatccgatt gaattcggtc aaaagcaagt       840
     tgctgagagt gcgtgcgagc ttggagtcaa gtgaagaagc tccaaatccg aacctgaggt       900
     gcaagcagtt cttgcagttg cagctgaaaa ccgttgagaa cgcgtttgct gagtatactc       960
     agctccacca gcgtgttttc gaagcggacg ttggtgacga ggtacgagag gcggcagagg      1020
     tagattacgt tacgtttgag cagcgatacg gtgagttatt catttttctt tctaaattga      1080
     tcgacgacaa catcaaaaaa gaagatgaag ctcgagccgt gtcggccttc cagccagtac      1140
     cgagttcctt gaccgcggct gctgataccc cgttccacgt accaccgttg aaggttccac      1200
     tgcccacatt cgatggaacc tatgagaact ggtttgcctt ccgttcgatg ttcgagacga      1260
     ttatgaagcg gtacagcacc gaatctccag ccataaaatt gtaccatctt cgtaattcgt      1320
     tagtaggaaa ggccgcaggt attatcgacc aagaaatcgt caataataat gattacgatg      1380
     tggcctggca gatgttgatt gatcgtttcg aagacaaaag gctcattatc gacaaacaca      1440
     ttgatgcgct ttttaatctt ccgaaattag caaacgaaaa cgcccctgat cttcgaaaac      1500
     tcattgacac atgcacgaaa aacgttgacg ctctaaaaaa cctcggtctt cccgtggagg      1560
     ggttaggaga atgcatgttg atcaatcgta tcgcttccaa actggatcag gaaactcgaa      1620
     aggcctggga attgaacagt atcgacgatg aattaccagg ttacaacgac actcttgagt      1680
     ttttgcgcga gaggtgtaag gtactagaaa aaatccagtc cgttgttaag caaccaccca      1740
     agattcagaa acccgtacga aacgttccag atatgaaggg gaaagcgagt accctagtcg      1800
     ctacatctga aaggtgtcca caatgttcgg aaactcacga gctgtggcgg tgtgaagcgt      1860
     tcaaaagcgt aagtttgtct gagaagtaca atacactgcg acgcctcggg gcctgcttca      1920
     attgtcttca gaaggggcag aaacgatcaa ttgctcatcg aaaaacacgt gcaagaaatg      1980
     tcggaaatct caccacaccc tgctgcatcc tgaagatgat ggtacgaaga aattcgaaca      2040
     cgcaccaacg tccgcaacga agccggagct accaacgaag gaacctgaac atccaaccaa      2100
     gagctcaccg gttgtaactg cgttagaggt tgaacaacaa tccaacttct gcacgcagcc      2160
     gaagaacagg ggaaagcaga ttctcctgtc taccgctgtt gtcctcgtct atggcaagag      2220
     tggtcgccag tatccctgtc gagtgctact cgactccggg tcgcatacga gcttcgtaac      2280
     ggagcatttc gcgactcttc tggcactgaa aaaggaacca acgaatgtga acatcagctg      2340
     cttgaacgat acccacacta aagttcgtct caagatccac acccaagtga cgtcgcgtgt      2400
     aacggattac acggtatgct tggaactgct ggtggttcca aaaatcaccg gactattgcc      2460
     tacaagtaag gtgaatattg caactctgga cttgccgaac ggcattgagc tcgccgatcc      2520
     cgggttctac gttcctgaca aagtgaacat gttgttggga gcagatgtgt ttttcgacat      2580
     gttgatgtct ggtcgaattc aactaccaag aagttcggct ttattgcaag aaacccagtt      2640
     tggctgggta ctgagtggtc ctgtttcaac cgaagatgac caggttgtcc attcgttttg      2700
     cactactacg ttggatgaga accttgactc agtggtgcgt aggttctggg aaatcgaatc      2760
     gttcggagag atccagcagc ctaatccgac ggtggaggag gagtgtgtgc aacatttcaa      2820
     ggagacacac gagcgcaccg acgaaggcag atattcggta cgtctgccgt tcaacgagaa      2880
     gaaaacccag ctgggagatt ccagacgtat ggctgagaag cggttctacg ggttggagag      2940
     gcgcctggaa gcaactccgg agctgaaaga gcagtacaat gcattcctga aagactacga      3000
     atcactcggt cacatgatcg agaacccgac gcctggtgat caggctttct atctcccaca      3060
     tcactacgta ctgaagccca ctagtacctc tacaaaacta cgtgtggttt tcgacggctc      3120
     tgctgcgtcg gacacaggtg tctccataaa ccaaacgcag atgatcggac caatcgtaca      3180
     gaacgatttg gtatcaattc ttttgaattt tcgctcctac cgatttgcct ttacagccga      3240
     cattcctaaa atgtatcggc aagtcggtgt acacgaagat gaccgacgct atcagagaat      3300
     cttgtggaga caaaccaata acgatcccgt gaagacgtac gacttacaaa cagtgacgta      3360
     cggactcgct tcgtccccgt tccttgcgac gatgtctctc cgccagctgg ccgaagatga      3420
     aggagaccag tatccgctgg cagcacatgc gatcaagaag tcctgctaca tggacgatgt      3480
     tttagtagga gccaacactc taccgacagc gattgagttg aagaaccaga ttgtcggtct      3540
     tctagagaag ggatgtttca gcgtacacaa gtttgcgtcg aattcctgtg aactgttggc      3600
     ggatgttccc gacgagcagc gggaacgcag catcgacatc gaggatccca gcatcaacgt      3660
     aactatgaga actctaggcg tggcctggaa tcctgtggat gatcagttta caatcgtatt      3720
     tccaactcaa caagtcagcg agaacgtcat ccacacgaaa cgaacgatcc tgagtcaaat      3780
     tgcgaagata ttcgacccgt tgggcttcgt aggtccggcg gttactgcag ctaagctgat      3840
     tatgcgtgag ctgtggtcgt tgaacttgga gtgggaccaa ccggttccac aagatatggc      3900
     gcagctgtgg ctagactact cacaacagct gcgctgcttg aaaaacgtaa aaattccacg      3960
     atggatcctg tgtgaagaca actgcggcat cgaacttcac gggtttgcag atgcgtcgga      4020
     tctcgcatac ggcgcctgta tatatactcg attgaagcga agtgacggca cagcagaatt      4080
     gaagctagta tgcagtaagt caagagtgtt accacgaaaa aaggagaagc agaagaagat      4140
     caccactcca cgcgcggagc tgttggccgc agttgtcgcg attggtggtg aagatattag      4200
     aagcattcga aatccgattt gatagtgtga acttatggag tgactctcaa atagtcttgt      4260
     gctggatccg caaggcactc gaagagctgg cgatatacgt cggcaatcga gtacgcgaaa      4320
     tacaacattc aaccgaaaac ttctcctgga aatacatccc gtcgaaagaa aaccccgctg      4380
     actgcgtctc ccggggaatt gcaccgaaga acatggaatc tcattctttg tggtggactg      4440
     gaccaccgac gctacatgca gccgatcctg ccatcgatga gccgccacca atagcggacg      4500
     aagaaatacc agaagtgaag aagacagtgc tagttgcagt gaccagagaa gatcgacttc      4560
     atcttttcga tagaatcagc cgtttcccga tcatccagcg cgcaatggcc tacgttgtgc      4620
     gcttctgcga ctacgtgcga agtggaagaa agcagctcac aaagggcttg ccgactactg      4680
     atgagatgtt gcgatcatcc actctaatcg tgaagctagt gcaagctgaa ggatttgctg      4740
     gagaactgaa gcttatgcga atgaaatctt cggactcgaa gttaccgttc ggcaacttgc      4800
     atcctttcgt cgatctgaac gatggcgtgc ttcgggtcgg tggtcgttta tcaaatgctc      4860
     aaattccgta tgatcacaaa catcctgctc tactacccga aaaacatcca ctgactgtta      4920
     ccctgattcg atacctgcac caaaataacc ttcacgttgg tcagcgaggt ctactagcca      4980
     tagttagaca gcaatactgg cctctgcgag cgaagaacat tatccggaag gttgtgcatc      5040
     agtgcatttc ctgctatcgt tcgaaaccaa caaaggccac ccagctgatg ggtgacctac      5100
     ccgattaccg agtccgacct tcatttccgt tcgcacgcac tggactcgac tttgccggtc      5160
     cattcaagat acgttcaagc cataaactac gtagcgccca gacgataaag gggtacgtct      5220
     gcgtatttgt ttgcatggct acccgtgcac ttcatctaga agccgtgtca gacttgactt      5280
     ctgaagcctt ccttggagcc ctgcaacgat tcgtcagtcg tcggggtctt gtagagaacc      5340
     tctactccga caatgcgaca aatttcgccg gtgccaacaa tgaattgcag cttctcgccc      5400
     agttgtttcg tgatgagcaa catcgacgcg gcttagacgt attctgtacg cagcgaggaa      5460
     taaagtggtc cttcattcca ccccgaagcc cacatttcgg cgggatttgg gaagcgggtg      5520
     tcaagtccgt caaacttcac ctcaagagag tccttgccga gcacaatctc tcgtttgaac      5580
     agtttactac cgtgcttgcg cagatagagg ctcttttaaa ctcccgacca ctgactcctg      5640
     tctcggacga cccgaacgac attcgggcta taactcctgc ccatttcctg atcggccggg      5700
     agttccaagc aatcgccgaa ccatcgtaca agaagattcc tcctggtcga ctctccaagt      5760
     ggcagttcct gcaagatctg aagcaaaaat tctggaacct ttggatgacc cactatctcc      5820
     acgagcttca acagcgccag aaggacttca aggtcaccac tttcaaggtt ggcgcgctag      5880
     tgctgatcat cgacgagaac gttccgccgc ttcaatggat gttggctcgt atcactgagc      5940
     tgattccagg aaaggacggc cacacacgag tggttggcct gctattacca aatgggacaa      6000
     aaacaacgcg agcggttaag aaaatctgtc tacttccctt agacaccgag gtagattcgc      6060
     aagagccaag ttcttgaaat gacccatttc aacgcgtggg agga                       6104
//
ID   BEL-903_AA-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-903_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-200
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-200
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4558-4558 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 200 BP; 59 A; 52 C; 34 G; 55 T; 0 other;
     tgttacgcct ggcaacacga cccagcaaac aagcccacct cccgagatga acacaccatg        60
     aatactgttt cactttgatc catacccata ccattgtaat gtttctaaaa taaagttagt       120
     tatgagtttg actgttccaa gagcagacgc gagttttatt tcgcccgtat acagtccatt       180
     ttgtttagcc gaacagcaca                                                   200
//
ID   BEL-904_AA-I repbase;    DNA;    INV; 3079 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-904_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3079
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3079
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3079 BP; 938 A; 653 C; 748 G; 736 T; 4 other;
     aattaaattt ttcgtttatt tacgaaatgt cgtkcggaag cgtagcgggt gcagggaaat        60
     gtacccccag gaaaagcgat tctcctggtg acgatggggc aagctgcggt acgtgtcgtc       120
     gtatcgattc gagtgaaatg gtccaatgcg acgaatgcga tatgtggcat cattatagct       180
     gcgtaaacgt agacgacgga atccgggatc gtgattggat ttgcaatagt tgcgtcagaa       240
     agtcattgga gacacaaagg tgtgctttga gcgacgagct ggagcgcttt gaacaacaac       300
     agaaacagtg gcaacgagag caacataaac gcctagagga aatggaggag cagcagaagc       360
     ttgagcagcg gcagaaacta cgaaagttgc agcagcgtaa tcaagagcag ttcgaccagt       420
     tgcagttagg accgttgcag ttgctgcatt ctagttcgtt gtcaagaaca gctacagcgg       480
     ggcgtgaagt gccttcaagt ttggttggcg tttttccgaa acagcatcaa ctccaagcga       540
     atatcgtaga cgatgatgta cggggaacga aaacagtgga tgaacaacga catgcagatc       600
     cattggcgag ctctacgacg aaaaaagtga gattacctgg tggaagcgaa aaggsgtctt       660
     cgaaatcatc gaagcgttca gagaaacttc gtgaactgca agcaaaagct ttggaagcaa       720
     ggcaagcatt agagatgagg cagcttgaag agcgactagc mctggagcga gagatgttgg       780
     aggccgccag tgattctgag gtggagtcga tttctagtct cgacaaaatc aacgagtggt       840
     tgaagcggac agacaatgcg gagaaggagc cacgaaattc gatggacgaa acaccattgc       900
     cggtgtataa cgcactattg caaaaaccgg taaatattcc agsgatccaa acgaatttgc       960
     ccagcagttg ttccgtggtt gggccatctc atcagcaacc tttcgggaat ccagcgtcgc      1020
     ttcagtcatg tgctggcttg cagcaaattt gtaataatta tgtccctgga gttagatgtg      1080
     tcgagtatcc tcgagctacc gaagttgtag ggaataagca gtcagtgttc aacggatatc      1140
     catcagcagt aatgaacatg agatcggccc ccgtatacac cgtagcgtca caacaaccga      1200
     tcctatcgac tgggtatgcc tatccagaac caagccatat gcatcctgct tcaaacatag      1260
     cttcgaccac tcaaaacgtc ggactgccac caatagcaac atcaacccca cgatcaaatc      1320
     agaccttctg tcagcagcaa tatcaatcgc aacagtgtag tgatcctgca acactcaatt      1380
     gcaaccaact tgctgcaaga cagaccgtaa aagatctacc aaaattcggt ggagaccctg      1440
     aagattggcc acggtttatt gcagcgtatg agcgtacttc caggatgtgt tccttcaaga      1500
     acgatgagtt gctcgaccgt ctggagagaa gtctttgtga taaggcgctg aatgctgtca      1560
     agagtcttct attacatccc aataatgttc cgatgatcat taatcggtta aaaacactct      1620
     tcggcaatgc agaattcatt atagaaacaa ttattcgaag aattcgcatg atgccaccac      1680
     cgaaagctga caagttagaa acgattgtcg attttggcgt cgcagtgcag aatctgtgtg      1740
     cgacgattca agtttgtcag atagacgaac gtctatacaa cgtcgcattg ctacaggagc      1800
     tggtagacat gctaccgtct acttttaaaa tgcaatgggc gtttcatcgt aaaaatattg      1860
     ttacacctac aatgttagac ttcaacaatt ggcttgaaga aatagttgag gtcttaagcc      1920
     aggtgattag acctgctatg tgggctaagc ctcagagttt cggtagcaaa catgaaaaac      1980
     aagtttacgt tcatgtccat tcttcagaca cttcaggaca agagaatctc gaagtctgcc      2040
     ttgcgtgtga caacaattgc agcacacttg aaacgtgcaa caatttcctc gaaatgtcaa      2100
     cgaatgcacg ttgggcgttg gtcaatgaaa ctaaagtttg cagaaagtgt cttactagac      2160
     attttgattc ctgtgagaga aagattcgtt gcaaccagaa cggatgcacc tttctacatc      2220
     accggctatt acacgacgat aagaagcata aaaagcaatt atcgaatgtt tcaatacaaa      2280
     acgcatcttg caatactcat cacggttcga aagaaggagt tttgctgaag tatattcctg      2340
     ttactgtgta tgggaaggag aaatcgataa ctacatatgc cttcttcgat gcggggtcga      2400
     catcgacgtt gatggaacat agtttatggg aagaattaat ggccgaaggt gagagatcac      2460
     cattgaacat aacgtggaca gatggacaga gaaggtgtga aacagattcg gtgctatttt      2520
     cagcgaagat agctggttca aaaacaccaa atcaaagctt cctccttcct gaagtacata      2580
     ctgtgcaaag cctagatctt cctgtacagt caatttcagc agaagattta gtgaagcatt      2640
     tccctcattt gtcaagtctg ccaatagagt cttatgctga agtgaaacct cgaattctgc      2700
     taggtgttga caattgcaga ctggaaaatc cgcttgactg cagagaaggc gatacaaatc      2760
     aaccaacagc aattctaaca cggttaggat gggtggttta tggtccgtgt ctgatgtcca      2820
     cacgaactat ggttagtgaa gaagtctcga gcccttttaa tgacaatccc aaggctaaag      2880
     ctgtcctgac agacaagttg ccacaaacta gcatggaaac aactccatct gcttgcaaac      2940
     gcgatgaagt gaaacttgtg gtcagaaaaa gtaaggccga tgtcaactat atcaaccctc      3000
     agatacccaa taccgaagct gtatttccca gactccggcg cagcatggag tacacaggaa      3060
     cccgtgtact gggggggag                                                   3079
//
ID   BEL-904_AA-LTR repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-904_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-656
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-656
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4559-4559 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 656 BP; 244 A; 107 C; 118 G; 187 T; 0 other;
     tgttacgcaa tctgcgaacg cgcctccgct acgaacaagc tcccatacga tctcgccgtc        60
     cctgtcaagc gatactagga ataggtagaa cgtgaaaaac gataaaaaca aacaatatga       120
     taaggagatg tgtcaaagga atgttgaaag ttattattta caaaacccaa atctaagctg       180
     ctaaatcttg cgaagttatc ttcttaaatt aactgaataa ctaaattgag agttgctaca       240
     aaactaaaat aggaagttaa aagatgatgt gctaaaaggt aaactgaatt taaaaagatt       300
     attgttatta taaacgaatt ctaatctagg tatcacagag gtgtatcaca gtttggattt       360
     cgattatcgt tagctgtccc ggtagatcat taattgattg taagaagtat tgtacgagac       420
     cgctttccga aattgacgga ctagataaaa tcactaaacg taagtaaaca catgaagcaa       480
     ttgtagagat agattgaatt taaacataca tttatattcc tctatttgtt aatttaacag       540
     gaaaaattta acataagcca ataaacgaat acagtaaacc actggaaaat tcacttgctg       600
     gcaagttgtt caaatttgcg gaaaattatc taccgtcttg ttgccgttcg ggaaca           656
//
ID   BEL-905_AA-I repbase;    DNA;    INV; 3175 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-905_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3175
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3175
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3175 BP; 948 A; 698 C; 790 G; 739 T; 0 other;
     aattaaattt ttcgtttatt attccggaat gtcgtgtggc agcgcagcag gtgcggggaa        60
     acgtgcccaa agaaaaagcg attctcctgg tgatgaggga gcgagttgtg gtacttgtcg       120
     tcggatcgat acaagtcaaa tggtccagtg tgatgaatgt gacgtatggc atcattatag       180
     ctgcgtaaat gttgacaata gtatccagga tcgtgattgg agctgtaata aatgcatgag       240
     aacgtcattg gagaatcaaa ggcgtgcttt gagcgaccag atggagcatc tcgaacaaca       300
     gcagaagcag tggcaacgag agcaacagaa acgcctagag caaatggatg aacagcagga       360
     gcttgagcag cagcagaaac ttcaagagtt gcggcagcgt aagcaggagc agttcggcca       420
     gttgctgttg ggaccgttgc agttgcaaca gcctatttcg ctgtcgagag ctgctgcagg       480
     tcgtgaagta ccttcaactt cttttggcgt cattccgaaa cagcatcaac agcaagtgaa       540
     gatcatggag ctgggagtat cggaagcgtt aacagcggat gaacgacgac atgcagaccc       600
     gttggcgagc tctaccacgg ataatgtgag actatctggt agaagtgaca aggcatcttc       660
     gaagtcttcg aggcgctcaa taaaacttcg cgaactgcaa gcaaaggctt tagaagcaag       720
     gcaagcattg gaaaagaggc agctcgaaga gcaacttgcc ctagagcgag agatgttgga       780
     agttagtgat tccgagttgg aatcgatttc cagtctcgac aaaatcaacg agtggttgga       840
     gagtacggat aaggcaggga aggagcttgg aaatgcaatg gacggaacac ctctaccggt       900
     ttacgatgca ttattacaaa aaccgatagt tacgcccacc atccaaacgt attttcctgg       960
     ctgtgacact ccgtttggac catcatctca ccagaacccc atcggaaatg cgacctcgcc      1020
     tcaaccatgt cttacttcgc agaaaaatta cagcggttgt gcttccggag ttaaatacaa      1080
     ctatcctcga gtgagcggaa atattccaaa aactgtggca acccctcagc caatgtttaa      1140
     tggatgttca gtagcagtga tgcatccgcc ttcgatgcct gtctataccg tagcgtcgca      1200
     tcaaccgatt atatcgactg tctacccgga agtgaattat ccgcatccag ctgtttccat      1260
     ctctcaaaat gtcggagcgc aaccgatgat tacatccaat caacgaccga atccggcatt      1320
     ctgtcaacag caatatcagc cacagcagtg ttgcgatccc gtatcgctaa gtaacaatca      1380
     ccttgctgca aggcagacag tgaaagatct gccgaaattc ggtggagatc ctgaagactg      1440
     gcctcggttc atcgcagcgt acgaacgtac ctccaggatg tgtgccttca gaaacgatga      1500
     actgctcgac cgtctggaaa gaagtctgca agataaagcg cttaatgctg tcaagagtct      1560
     tctattacat ccagataatg ttccggtgat catgaaccga ttgaagaccc tatttggtaa      1620
     tgcagaattc atcattgaaa ccatgattcg ccgaattcgc ctgatgccgc caccgaaagc      1680
     tgataagcta gaaacgatta ttgactttgg cgtcgcagtg cagaatttgt gtgcgacgat      1740
     tcaagtgtgc cagatggacg aacgtctata taatgttgca ctgctgcagg agctggttga      1800
     tagtttaccg tccacattaa aaatgcaatg ggcgttttat tgtaaaaata ttggcacagc      1860
     cacaatgtta gatttcaaca actggcttgg agaaatggtt gaagtcctaa gccaggtgat      1920
     tagacctgct acgtggaaca agccgcagaa gttagatagc aaatccgaaa aacaaggccg      1980
     gagagaacag gcttatgttc acgtccattc ttcggacaat tccgagcagg aggatatcga      2040
     ggcctgtcta gcgtgcggta atgattgcag cacactcgac gtgtgcaaca acttcctcga      2100
     aatgtcaacg aatgcacggt gggcgttggt caataagaaa aagatttgcc gaaggtgttt      2160
     aacaagacat ttcgaggcct gtgacaggaa gattccatgc aaccaaaacg gatgcaactt      2220
     cttacatcac cggttgctac acgacgataa gaaacataaa ctccacctat caaatgattc      2280
     aacacaaaac gtatcctgta atactcatca ctgttcggag gaaggagtcc tgttgaagta      2340
     cattcctgtt acagtctacg ggaaagggaa atcgatcagc acatatgcct tcttcgatgc      2400
     gggctcgacg tcgacgttga tggatcacag tttgtgggag gaattgaata tcgaaggaaa      2460
     aaaattgcca ctgaatattt cgtggactga tggacagcag cgacgtgaag cagattcggt      2520
     agtatgttca gcgaagatag gtagttcaac aacttcaaat caaacctatc ttctcccgga      2580
     agtacatacc gtgcgaaacc tagatctccc cgtgcaatca ctgtcagccg aaagtttagc      2640
     gaaaaatttt ctccatttgt caaatatacc aatagagtct tataccgaag tgaaacctcg      2700
     gattctgcta ggtgtaaaga gctcaagatt ggaaaatcca ctcgactgta gagagggtga      2760
     tgaaaatcaa ccgacagctg ttctaacacg tttgggatgg gtggtctacg gtccgtgtcc      2820
     cgtgtcaaga caagcaatga cgaccggaaa tgtttcaagc actgtagaag ataataccca      2880
     ggctacacct gtggtgatca caaatgatga tgagcacatc gagaagctgc cacaagctag      2940
     catggatgaa acccggtatg gaagtctaca taatacagta tcaggagaag gtaattcaaa      3000
     actgttacct gggtatcacg ctttccgttc tcatcctcgg actaaaccaa ccaaggaact      3060
     catggttaag gaaggtgagc actacggtaa ccctcaggta ctcaatactg aaatctgtgt      3120
     cactgagaaa tcggcgcaac aaggagtaca cagggatccg tgtactgggg gggag           3175
//
ID   BEL-905_AA-LTR repbase;    DNA;    INV; 730 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 26.08, Created)
DT   18-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-905_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-730
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-730
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4560-4560 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 730 BP; 264 A; 115 C; 140 G; 211 T; 0 other;
     tgttacgcaa tatgcgaacg cgcctcagct accaataagt acccatatta tctatctgag        60
     taggtgtgcg cactgtaagg aattccagaa agcggaacaa aacaaataga ttcattgagg       120
     tgtaaaatgt cgaaataaga agaatgaggg tgtatgagtg agtagaaaat ccagtgttta       180
     tatttacttg aagtctaaat tgaactaatt aaatttgcaa agttagtgag catcttggtg       240
     agcatatcta tcgtaattgg cggcataaga actaaagtta gtgatcgcat tccggtctat       300
     ttaatctaat ttgagtcttc tgaaacagtg gcatacaaaa ggtaacgaaa tctatttgaa       360
     tctgtgctgt tttgtagtat aaacaaaaat catatccata gcagagttaa atcacagtta       420
     gcaagcataa gttgccgttt tttgtaagca gttcagatca tcgagcaaaa tttccaaaac       480
     taccgcacaa atactaattt ccggacttaa cgtactaggc gggaacacta aacgtgagta       540
     aacaaacatt gaactattta tatacaaatt aaaactaaaa caggaatact tatgaatcta       600
     atgtaaactt tacaggaaaa atttaacgta taagccaata aaagtagttt gaagcaatag       660
     aaaatctact tctggcgagt cgtttaagtt tgcggaaatc tgattaccgt cttgttgccg       720
     tttgggaaca                                                              730
//
ID   BEL-906_AA-I repbase;    DNA;    INV; 3215 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 26.08, Created)
DT   22-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-906_;
KW   BEL-906_AA-I; BEL-906_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3215
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3215
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4547-4547 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 3215 BP; 961 A; 709 C; 802 G; 743 T; 0 other;
     aattaaattt ttcgtttact ccggaatgtc gagcggaagt gtagcgggtg ccgggatcca        60
     ttcacggcgt aaaagtgatt ctcctggcgg tgatggagcg agctgcggaa catgtcgccg       120
     tgttgataat agtcggatgg tgcagtgtga tgactgcgat gtttggtatc actacgactg       180
     cgtgaacgtg aacgacagtg ttcgaaatca cgattggagt tgcaatgaat gcgtgcgggg       240
     agcactggat aagcagaggc gtgttttgag tgagcagttg gaagtttttg aacagcagca       300
     aaggcagtgg cagtatgagc aacaaaagcg tctagagcag ttggaagaac agcagaaact       360
     taagcagcga aatgaacaag aatttcagca gcgaaagcaa gagcaaatcg tccgcatgca       420
     gctaggagag ttgcagttac aagagccgag tatgccgttg ggaaaagcta taactgagct       480
     tgaagtaccg ttgaaatctg ttggtggaat ctcgaagcaa aataagcagc atgtgaagat       540
     cgtggagacg gatgcgccgc aaggattttc gacagatcgt cgactttaca ccgaaccgtt       600
     ggctacctcc atcgccaata atgaaagaac atcaggaaga tccgataaga catcttcgaa       660
     gtcgtcgaag cgatcagcaa agcttctact actcgaagcg agagccctgg aagcaagaca       720
     ggcattagag aagaagcagt tagaagagcg actggctttg gaacgagaaa tgctggaatg       780
     tagtgattcc gatgcggagt ccaacataag tttggaaaag atcagtgaat ggctggagaa       840
     aacggaacac ttcggacagg aagcaggaaa cgtcttaaat gatacgccgc tgccggtgta       900
     caacgagata ctgcgaaaaa ccgtggctcc tccaacgcaa ctatacttcc tcagtagcgg       960
     ggatcaagct gggccatcta ctcatcagca gcagcatgga caatattttt cgacacagcc      1020
     gcacgccgtt ccgaagcaac ttggtgtcag ctacgcgcct gattcaaatg tgaggcatcc      1080
     acaaaccagt agaaacgttc caatagtcac atcgtgccac cagcctgaca tttatggacc      1140
     agcagtatct ggtatgttac gagagcctat gtacaactta gcatctcagc aaccaatcgt      1200
     atcgacagcc accccgtcgg caaactatca aacccatttg cctcataata tgggtacctc      1260
     ccagagggtt ggcaatccgc cgcttgtaac ttcaactcca cagcaaagtc tgcaacatta      1320
     tcaactacaa acaaatagcg atacggtacc gctcaatagt ggccatcttg cggcgagaca      1380
     gacggttaag gatctgccaa agttcggtgg agatcccgaa gattggcctc gattcatcgc      1440
     ggcgttcgag cgcacatcca ggatgtgcgc atttcgtaac gacgagcttc ttgatcgact      1500
     ggagcggagc ctgtacgata aagcactagc cgccgtcaag agtttgctac ttcttccaga      1560
     aaacgttcct gtcattataa atcgcctgag aactttattt ggaaatccag agtttatcgt      1620
     ggaaacattg atccagaagg ttcgcatgat gccgccacca aaagcagaaa agttggaatc      1680
     aattgtagat tttggcgttg cagttcagaa tctctgtgca acgatacaag tatgtcgaat      1740
     ggacgaacga ctttacaatg ttgctattct gcaggagttg gtagatagct tgccgtctac      1800
     actaaaaatg cagtgggcat tataccggaa agacatcgga acacccacaa tgatagactt      1860
     taacaactgg cttgaaggaa ttgtagaggc gttaagcaag gtaatcaggc ctgcagtgtg      1920
     gattaaaccg caacggtctg acaacaagtt ggaaagacaa actcggaaaa acgaaaccta      1980
     tgtccatgca cattccaccg ttccatcgga gcagatagaa cataattcat gcttagcgtg      2040
     cggtaatgag tgcagcatgc tcgaagagtg tagcagtttt ctagaaatgt caccaaacgc      2100
     acgatgggcg ttggccaatg aaaagaaaat ctgccgaagt gtttgtccaa gcacttcgaa      2160
     acatgcgaaa ggaggattcc atgtaaccag aacggatgca cctttttaca tcactggttg      2220
     ttgcacgatg acagcaaaca taagaagcat caatcagact ttccaacaca cactgcatca      2280
     tgcaacattc attacagtga gctgggaaag aatttattaa aatacatacc agttacgcta      2340
     cacggcaatg gaaaagcaat taatacgtac gcttttctag atgcaggatc aacatccact      2400
     ttaattgagc acagtttatg ggaagaattg aacctcagcg gcgagaaatc ccctttgtgt      2460
     atctcgtgga ctggtggaca aaataggagt gagaaaggtt cagtagtatt ctcggtagaa      2520
     atctcaggtg ctcattctcc tgaacagagc tttcatcttc cggaggtaca tactgtacat      2580
     agtctagatc ttcctgcgca gtcaatgtta gcatcggatc tggcgaaacg ctttgaatat      2640
     ctctctggtt tacctgtaga ttcgtacact gaggtcaaac ctcgaatttt attaggtgtt      2700
     gacaactcca gactcgaata tcctctcgac tccagagaag gtgggcaaaa ccagccaaca      2760
     gcagttctta ccagactagg ctgggtgatt tatggtccgt gttcgacgtt agagcaaacg      2820
     acaatgaaga aagatgtgcg taaatacggt ggtttccaga ttcaacacgt tgaaaaaact      2880
     ttaaatccaa acgacgatat tcccgcaact ctgtgtaata actggaggcc atcccaaatt      2940
     tacgccagct tgttctggaa acgtcggatg cgcgaatatc tgccgtcgat tatccgtcgg      3000
     acaaagtggc actatccaga gaaggacctg ccgaccattc cgtggcagag aggaggccgt      3060
     gtcgtggacg tcagctacaa gaacagtcaa gtgcgtagtg caacagtgta ttcgctcttt      3120
     aacaactatg aacgtccaga ggtaaaactt gaagttctgg tcgtcggcgc aacggtaggt      3180
     actcagcatt ctgaaacctg tgtactgggg gggac                                 3215
//
ID   BEL-906_AA-LTR repbase;    DNA;    INV; 728 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 26.08, Created)
DT   22-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-906_AA-I;
KW   BEL-906_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-728
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-728
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4561-4561 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 728 BP; 258 A; 127 C; 138 G; 203 T; 2 other;
     tgttccgcaa tctgcggacg cgcctccgtt accaacaagc ccccatcggg agtcaacgtc        60
     aatggctcag atcgacgtag ccgacggagc ggtggaacgt cagatagtta agaacatata       120
     taaaaacaga aaacaaatgt gaaagatctc tgtcgatcgt attatttagt caatgatttt       180
     gatctaataa ttcagtaaaa gtgttcaact ggctaaaggc cgattaaaat tattaggaag       240
     tagagcagtg gataccattt gaaggtaaaa tgaatttgaa gctcattcga aatagttaat       300
     agaaatctac cttgatatat cctagatcaa cctcagtcag taaaagttta tttacatatg       360
     cgttggaatc acaattgcaa gtgtttacgg aaaaggtagt aaatgaggta atttgatgtg       420
     caaagtaatt aatactaatt aatttgaata gttttcccta cacttataaa ttagctacag       480
     ctaaacacta ataacagaga gcgtaccgta gcataccgcc ttctggacgt aacgaagagt       540
     aacgtagaca ctaaacgtaa gtaacaatwa aaccaattca gtataatgtt agttattatt       600
     aaagtaaatt gtatcctaca ggaaaaattt aactaattcg ccaatacatt acgkgaaacc       660
     accacattag cgagtttgtt tagatttgcg gaagtctatc gtccgaattg ttccctgtat       720
     cgggaaca                                                                728
//
ID   BEL-907_AA-I repbase;    DNA;    INV; 6852 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-907_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6852
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6852
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6852 BP; 1954 A; 1575 C; 1517 G; 1806 T; 0 other;
     tcttaaagtt tcgtttttac ccggataaag cggatcttat aatgcctcgg cgacctgata        60
     ttcaagaaga tagtttatac cagaactgtc cactttgctg tttaccggac agtagtcaaa       120
     tggtgagttg cgacgaatgt agccgctggt accattttgc ctgcgctggc gtgagtgagg       180
     ctatcacgga ctacgattgg agatgccagg gatgcaacga tgccagagtt tctgctccag       240
     tcactccaat gacgtctact caatcgccag gcaatgtcgt ccccaccgaa ccgccacttc       300
     cacactcgtt tgtgccaata atcgctgggc cgagaacaat ggcctccgca tcgccacacg       360
     ccccactcgt atcagcagca ggcccgaatg cacgagatgc agtttccttc ggcgtcctac       420
     ccacgactct tgcaaagtcc attgttattg aatcgatgcc tgtgaccaat gctgcttcac       480
     cggccacgat gaatgcttgt agaggtcgtt tctctgcccc acctattgtt ccatgtacca       540
     caccgacaat ggcaactgca ggtttgtccc gagcgcaatg tgataatttt gctgctcaac       600
     ttcccgttga gctacggctg cgttttttag aagaagaaca agccctggaa agaaagcatt       660
     taatgcaatg gtatcaactg ctgatggaag attcacggaa tggcccactg aattctgtta       720
     acaatcccgt cgaatcacca cttcctaacg cagcatccgc attattcaga cagcccacac       780
     cccttccgac ccaaccacca cacataccaa cggttggatt tgccaccaca tcgacagatc       840
     gcaatcgaca gtaccagttc tcttcagtac caaatgtgga agaagttaat agatctctcc       900
     acgctggatt tccgttccat tcgtcacccg tccaacgccc cttcacaccg aatcaccata       960
     atattgatcc actgtcagcc ataggcgtag gtaccgagat gggtgtttta aactgaagcc      1020
     agatagctgc ccggcaggcc gtatcaaagg acctacccga atttaacggc aacccagaac      1080
     agtggccgtt gtttagtgct acctttgata gtacgacacg tatctgtggc tacactcacg      1140
     aggaaaatat gatacgttta cagaaatgcc tcaagggcaa tttggagaat gttatggcga      1200
     cgctcaaaat gctatttggc cgcccggaaa tcatcataaa ttcgctgatt caaaagattg      1260
     attctttacc atcgccaaaa tctgataaac ttaacactct cgtggatttc gccatagcgg      1320
     ttagaaattt ggtggccacg gtccagaact gtagcttaga tgaacatctt tgtaacgttt      1380
     cgttgctaca aaatctcgtg gaccgattac cagccatgat tcggctgaat tgggctacct      1440
     atcgtcaagg tttacatcga gttacgctcg cacatttcag tgattggcta tataatcttg      1500
     ctgaagctgc tagctcagtt acgattcccc agtttctcaa ttcgactgat aaatcacgac      1560
     atgcgcgcaa ggacgacgga tatttgaaca cccacaccaa cagctctata aaccaactcg      1620
     cgtgttcaga tgttcgtggc attaagcccc aacgatgtct cgtctgcaaa gcagaatgcg      1680
     aatctgttga aaaatgcaag aaattcttag cgctggatca ttcatctcga tggaacgctc      1740
     ttcgagaaat gaaactctgt cgttgctgtc tcggaaagca ttttggtcct tgcaagtcta      1800
     caaaattatg tggagaaaat ggctgcatgt tcaaacacca tcagctgttg cacaacactg      1860
     ccagggataa gcgcgttgaa attgccccaa gtcagcatga aactgcacat ggtactggtc      1920
     aagctgaaca cacctgtaat acgcacagag gcaacagtaa atcagtgtat tttcaataca      1980
     ttccggtcat tcttcataat caagggaaac aaatcagtac ctatgccttt ttagattgcg      2040
     gttcatcgtt gaagaaagcc tggcctctga actacgactg catggaagga aacatccttt      2100
     gtgcttccgt tggaccgccg atacgtgtcg atacgaggag tcggcgactg ttgttgcgtt      2160
     ggatatttcc ggatcacatg aaacgaacga aaaacatcga ctaggcgaag tttatacggt      2220
     aaaagatctg aaattgccgg tgcaatcatt accgtttaat gaactgtcag tgaaacatcg      2280
     ctaccttcaa gacttaccag tagattcgta catgaatata caacctcgca tcttaattgg      2340
     aatgaacaat gttcgtttaa ttcatccatt agaaagtcgt gagggcgacg aacacgaacc      2400
     ggtagcggcc agaaccagat tgggttggat ggtcttcgga acttggccaa tatgcggtgt      2460
     atcaagctct accgacttgc cacacagctt ccacatatgc caccattctg acgagagtga      2520
     ttacgaactc aattcagttg ttaagcagta cttcactctc gatagcctag gcatcatgaa      2580
     gccgcaaaaa gtactactat cgtcggaaga tgaacgtgct atccagttga tgcagacatc      2640
     cacaaagttt gaggctggca gataccaaac cgcactgtta tggaagcacg acgacataca      2700
     acttcctaat agtaagccga tggcgttaag gcgtcacaat tgcttggtga aaagaatgca      2760
     ccgcgaccca cctcttgcgg cagcgatgca ttcaaaaatg aacgaatatt tgcgcaaggg      2820
     ctacatccgt aaactttcga ttgaagaact gcaggatagc aagaagcgag tttggtattt      2880
     gcctatattt cctgtgttta acccaaacaa accgaacaag attcgagtag tttgggatgc      2940
     tgcggcgact gtaggtgaaa cctccctcaa ttccgtcctt atgaaaggac cggacctgct      3000
     aaacgatcta ccttcggtgt tgtatcgctt tcgagaacga ccagttgccg tttcaggaga      3060
     tatcgccgag atgtttctcc gcgttaaaat gaatgaaaca gatcaacact gccaacgaat      3120
     tttttggtgc gacgaggatg gttcaactgc agagtacgtg gtaacgggta tgacctttgg      3180
     agccaaatgt tctccgagct gcgctcaatt catcatcaac cacaacgcaa gcaaattcaa      3240
     attgcatttt tcggaagccg ttgaagtcat ccaaaaaggt cattatgttg acgacatgtt      3300
     ggcaagcgtc aatagtgaag aagaagccat aaagttagcg acagacgtcc actatataca      3360
     cgagcaagga ggcttcacca tgaggaactg ggtctcaaat tcatcagccg tagttgaggc      3420
     gcttggtgaa actgggtcag cagaaaaaag tttaaatgtt gacaaggatg ctgtacttga      3480
     aaaaattctg ggtatgtggt gggataccaa gaccgatact ttttgctaca agttatcgct      3540
     tgaacgatac caagatttgc tttctggtca caaacatccc actaagcgcg atatcttacg      3600
     cgtaatgatg tctgtctacg accctcttgg tctgttgtca cactacatga tctatttgaa      3660
     gctcttgttc caagaaattt ggagggaagg aatcctatgg gatgacgaga ttggcgaaaa      3720
     gcagttgcag aaatggaagt gctggttgcg gctgcttccg gacgccgagt ccacacgtat      3780
     tcctcgttgc tataacctgg taaaagttac ggaaagaatt gagctacata catttgtaga      3840
     cgccagcgaa ctgggatacg ctgccgtcag ctactttcga tttgttgaag gaaagcaagt      3900
     aatctgttct ttagtaggct ctaaggttaa agtggcgcct ctcaaatttg tgtcgattcc      3960
     gcgccttgaa ctccaggcgg ctgtaattgg tacccgcttg gcaaaaagca tcgaaaatgg      4020
     gcattccatt cagattacta gacgttactt ttggacggat gcccgggatg ttatttgctg      4080
     gctcagatcg gaccaccgaa agtattcaca atttgtagca ttccgtgtgg gagaaatatt      4140
     agaggcgagc gatgtcaccg agtggaatcg gctacaaggt aaaaacaatg tagccgatga      4200
     aggcaccaag tgggctgggc tcccaaattt caacatcagg aacaggtggt tctctggtcc      4260
     acctttctta tcaaagccag atttcgaatg gcgaaggcct gttgtcaacg aagaaactgc      4320
     tgaagagctt cgaccgagat tgctgcacca tagcgcctgc gtagttgaaa acctgttagc      4380
     acccgaaaac tactcaagtt ggactcgttt gcaacgagta actgcatggg tgctgcgatt      4440
     tccgtccaat attcgaagga aggttgaacg acaaaatgtt gttcgaggat cattgactag      4500
     cgaagagtta cgaaacgcgg aaaactttct gtataaacgc gctcaatatg atggttactt      4560
     gcaggaaatg aagaagttaa cggagaaggg aaattctgca ggtaagccaa tattaccaaa      4620
     aacgagttct ttgtacaaaa cgaacccgtt tgtcgatggc atgggtgtga tgcgtatacg      4680
     aagtcgaatc gacgtttgtg atttcgctga tatagacaca caatttccga tcgtattacc      4740
     tcgtggtcat ccgattacaa agttagtgct acagaacatc cacgaaacat accatcacac      4800
     tatccacgaa gcgtttgtga acgaatcccg acgcaaattc tacattccta gagtgcgggc      4860
     agaatgtgat aaagtacgtc gacattgtca gcgttgcaaa aatcgacgcg caaatcccga      4920
     acctccaatg atggcaaatc ttccaaaaga acgcctggct gcctacgtcc gcccattctc      4980
     gtacgtaggt gttgattatt tcggtcctta cgttgtaaac gttggacgac ggactgacaa      5040
     acgttggggt gttttaataa cttgcctgac gacgcgtgca atacatatag agatcgcgca      5100
     ctctcttcct acggattctt gcgtgatggc tcttcaaaat tgctttgcca gacgaggaac      5160
     gccactgcag attgtaagtg atcgtgggac taactttata ggagcatcaa agtaacttag      5220
     gaaggcgctc aaaaatttgg acaaggacag gatcagcgca gagtttacaa cagaatcaac      5280
     ggcatggatt ttcaacccac cctcttctcc ccatatggga ggggtgtggg agcgaatgat      5340
     acaaacagtc aagagaatcc ttatgcagat aaaaccgtca aaacgccttc ccacacggaa      5400
     aaaaaatccg ttgccggaat catgaacaaa aagtcatgaa atcataagat tttatgtttc      5460
     atgacatcat gactacaagt catgaaacca tggcaattat tcaagaattt gtgtgctcag      5520
     ggcgttacat aaatccaact gtcacttttt tttcatttaa gtcaacacgt cttttgcgat      5580
     cggtagtgtt ttttttttca gtgaaattat aaataagttt tgtttgcgca agaggttaat      5640
     ttgaacacca tgctcgtcgg aacttcagat gtgatgcatt ctccacatca cacaaacctt      5700
     cggcagccgg atgatcttta ccactttcca cgcccgcaga gtcgtttctt ccatcgccaa      5760
     aacaatccac cagcattttg cagtccaggg atgatgtacc aattcaattg atgtttgagg      5820
     tgacattttg cgtgcaaact taaccaccga atgttcctgc caaagatgtg gcactcgtta      5880
     agttgactct tctcacagtt tattccgaaa ctaccggcac aaaatccatc ttcatgttat      5940
     ttgtttacct atgacaaata tactgggatc ataattgacg tttgtatgtt ttcatgaagt      6000
     tagttcatga tttcatgatc cggtttcatg atttcatgac tcaaatctcc acttttcatc      6060
     accaaaattg gaatcataaa tgacagctat ctaaatccat gaatagtgtt catgttttca      6120
     tgaattttat tcatggttcc agcatacata gtttatgatt tgatgattta aatttacctt      6180
     tttggaaacg taacgtacag ctggcgttac ggtaaaaaga ttcatgattt catgactttt      6240
     ggtcatggtg tattatcata acatgaaaat acactttcct cccaaaatca tgaccttttc      6300
     tccttgtttt gagtgtcgca tttttacccg tgcaatgatg aaaccttaag aaattatttg      6360
     gcagaggtag aacatattgt caacagcaga cccttgacac acgtcccatt ggatgatgag      6420
     tcgtcaccag cgttgacccc gaaccatttt ttggtaggat cgtcaaatgg atcgaagcca      6480
     cttatcccat acgacgacag ccctatttcc ttgcagcagt catggaaaac gtcccaggtt      6540
     ctagcaaatt gcttcaggaa acgctggatc gtagaataca tgccgactat aacacgcaga      6600
     tcaaaatggt tctacccagt gaaaccagtt gcaattggag acatagtcat aatagttgac      6660
     tccagctttc ccagaaattg ctggcccaaa gggaaagtca tcgctgtgaa gatgtccaag      6720
     gatggtcaag tgcgatcagc aactgtgcag actatatccg gtatttatga taaaccggtc      6780
     gtaaaattag cggtgctaga catcgggaca aatgggagta agccggatca ggatccagtt      6840
     actggggggg ac                                                          6852
//
ID   BEL-907_AA-LTR repbase;    DNA;    INV; 631 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-907_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-631
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-631
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4562-4562 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 631 BP; 220 A; 110 C; 112 G; 189 T; 0 other;
     tgttgcgaac gcccctcgta aatgagcgca ccttcaattc accgacccga tgtacattga        60
     cgtcgactag acaggagcag agtgacgggg acagaaccgt gttttggaaa gacatgtgcg       120
     attcgtttat cattgcgagc taaaaagcaa cattgtgcat ataaagtgct gaattattga       180
     taatttgcga taaatttccc ttaaattaga attgaaaatt tgatatccta cttacgaact       240
     acggtaaaat ttgatattat gtgctacaga tcatgcatta acattaaatt cacttttcag       300
     taaaagttat aaatcttcct aaagatcagc cgctggtttc aagttaattt atgaattaga       360
     acatgttata acggtaattg aagatcatat tggtataaaa ctcttaaaat gatgtatgaa       420
     ttatgtaacc ttagatacag ccaacagagc gaagttgaat ttatcgcccg ggataaaaac       480
     gcaagaaatt tacaaaacgt aagccaattt ataagtaaca atttgtgaac taacctcact       540
     gaaatcgata tttccaggaa actttaacgt tggcctcaat aaacctgttt aaaatttcgg       600
     aacatagttt tcttcagttg ctagcgcaac a                                      631
//
ID   BEL-908_AA-I repbase;    DNA;    INV; 5375 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-908_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5375
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5375
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5375 BP; 1554 A; 1210 C; 1279 G; 1332 T; 0 other;
     ttttggtcca ttcgaccacg gatgtgttgt accggttctc gcgcgcggtt aaatgccaat        60
     aactactagg agtagatcga aaattcctgc ttttctgccg gtcgcacaac agaaggccgc       120
     caaagcagaa cgtgaacgca agaggaaaat ggcggaagct ctaacagctc ttcaccggca       180
     acgggagttc ataacctcca aagtggttcg catcaaatca agcttacaaa aggcggacga       240
     cgaacaggtt ccacttgacg aattcgtctt ggaaacgtac atacggacga ttgatgcagc       300
     ctatcacgaa atgaacgact gtcaaacgaa gatgtgcgaa gcaaatccag caaagcagga       360
     agaggaggaa caaatttacg tcgagttcga gacactgttt accgaagtga gagctgtctt       420
     gggcaggctg ctgaagcaga agaaagacgg gcaatctgct actacaaaca ccggtgttcc       480
     tcaactacac agagtgcagc aatcgattct accacacact cctctaccgt cgttcgacgg       540
     gaagcctgaa cattggttta ggttcaagtc aatgtttacg gacatcatga ataagtgcgc       600
     cactgaagat gcagcgacga agttatatca tctggataag tgcctcgtag gagaagcggc       660
     tggtgttatc aatcaacagt ttatcaatga aaacaactac gatgcagcgt gggagtttct       720
     agtgcagcgt tatgaagaca agcgtaagat tgtggatatt cacgcaaaca agttgttgca       780
     gctgaaatca atgacgcagg aaagcggaag gcaactgagg gatttgatcg aggagtgcaa       840
     acggcacgtc gattcgctca gataccacgg gtacgatgta ctaggcctct cagacatcgt       900
     attggtgaac gttcttgcat ctaagctaga ctacgagacg aagaaactct gggaagccag       960
     caacgaacac ggtgtcattc caacttacga aggcactatc gagtttctcg aaaagcacgc      1020
     atcggtgctc gaacgagtag aagcttcttc aagctgtcaa cccaagagca agccgaaggc      1080
     caacgtaaca gctacacccc aaaaggcctc acagtcgaaa tcatcttctt tcactgtgac      1140
     ggctgcagaa attaaatgct tgttctgcgg aaaaggacat ttcaatcacc aatgcgatga      1200
     attgctcaag gtttctccta gcgaaaggaa cgacatagct aagaaagctg gcgtttgcta      1260
     taactgtctg agaaaagggc acctcacgat aaaatgttct tcgaaacatt cttgtcgaga      1320
     gtgtaataag cggcaccata cggttcttca tcttgattct ccaaaaccaa acaacgatga      1380
     cagcaagacc gaaactgcca aaccagttga aactggaacg acgatgagca acgtggtaac      1440
     cctcaactgc actactggtt cgggtggata caaggatgtg ctgctatcta ctgcggttgc      1500
     gaacctcttg gacgtacacg gtaatgcgaa actatgtcgc atcctacttg attcaggatc      1560
     acaactacat cttatcacgg aagcaatgac agcacttctt ggaattcagc gcgaaaagtg      1620
     tgcaacctgt gttgttggaa tcaacgggaa agaaactcaa atcaagcacc aagtgacggt      1680
     tatgctgcaa tctaggacga caagctacag caagaacatc gaatgtctgg tggtaccgcg      1740
     aatcactggc acattaccgg ctcaagaact gaactcatcg gagttagcca ttcctgacaa      1800
     tgtttctctg gccgatcctg aattccatag gcctcagcga atcgaccttc tgatcggagc      1860
     cgaacttttc tacagtattt tgaagtctag tcgtatcgat ctaggacctg gacgaccgat      1920
     tatgcaggaa acgttcctag gatgggttgt tgctggacca accaacagcc gttcgacgtg      1980
     tgtacaatcc cgacaatgca atactgtttt gactgaagct aatcgtttgg atgaacttgt      2040
     tcaacggttc tggtctattg aagatgttcc cgtgactgcc aagctgtcac acgaggaaga      2100
     aatgtgtgag cagcattacg ttcaaacgac tacgagagac tcgtccggaa ggtatgtggt      2160
     caggttgccg tttcgtgaaa acgtgagtaa gctcggtgaa acaaggcaac atgcactgca      2220
     ccgattccag cagctagaaa ggcgtttgaa cagcaatgag cagctaaaac gtgaatatga      2280
     tgatttcata gacgaataca tccgcctcaa tcattgccga gagattcttg aacccgaagc      2340
     gagtagcacg ccgaactgct tcctgcctca tcatgcggtt ctaaaaccaa actcgtctac      2400
     aacaaagttg agaacggtgt ttgatgcatc cgctaaatcg tcatcagggc tctcattgaa      2460
     cgacgtgtta atgacaggac caaccgtgca agattctctt ttgaatatta ccatgcgctt      2520
     ccggattcac cagtatgttt ttacttgtga cgtgccaaaa atgtataggc aaattgcaat      2580
     gtcgccggta gatactagat ttcttcgagt gttttaccgc aagcagccaa cggatcccat      2640
     tcgcacattc gagctgacta ccgttactta tgggacagca tcagcgcctt ttgcagcaac      2700
     acgtaccttg cagcaacttg tacacgatga gggtgtaaag tttcctatcg cagcggacat      2760
     tgttttgcat gatttctaca tcgacgatgc actgactggc ggcgattctg tcgactacat      2820
     caagggagca gcagatcagc tcgtgcgtct tctagacctt ggcgggtttc agctacataa      2880
     atggtgttcc aattctatgg agtttttgga aacaattccg gaagaacttt gggagaaacg      2940
     gacatgatta gaattcagcg gagcgaacga tgtgatcaag acgttgggtt tactatggaa      3000
     gccctcaacg gatgaattat gtttccggat aaatcctgct caaaacgagg ctataatcac      3060
     aaaacgccat atcctttccg aagtttcaaa aacttttgat cctttgggac tttttgctcc      3120
     atccgttgtt ctttgtaaac tgctaatacg agatctgtgg aagttggaaa ttggttggga      3180
     tgatgaagtg ccaccggagc aaaggaactc ttggacgcga tacactacta gcttgaaaaa      3240
     agccgaagga ataaagatta gtcgatgcgt cctgtcacca aatcgagttg gtcttgaact      3300
     tcacgccttt gcagacgcat cgttgtctgc gtacggtacc tgcgtgtata tacgatctat      3360
     actacccgac ggcagagcgg aactacacct tttaacaagc aagtccagag ttgccccaaa      3420
     ccaaacgata cctcgactcg agctgtgtgg atttttgctg atgtccagat tggtggctgc      3480
     tgttatagcg gcaattaaac aagatttcga caaggtggtg ttatggacgg attcgacgat      3540
     tgtactatgc tggttgaaca aatcaccgca tgaacttaac atcttcgtgt ccaatcgtgt      3600
     tgcggagatt aacagagcga ccacagaatt cgaacgtaag tatgtggaat ctaaggcgaa      3660
     tccagcagat ttattaacgc gtggtgtgta tcctgcggag ttgaaaaaca atgacatttg      3720
     gtggcacggg cctacttttc tgcgacaagc gccgtatcca gagtttgaag gagcggaagt      3780
     aggtgatatt cctgatatga agagggctac ttgtgctgct tttgaaggtt cccgtgaact      3840
     tccgattctc accaagttca gctcattcag acgtttgcga cgagtcatgg cgtttgtggc      3900
     tcgtttcgtt cggaaggcta gaaagattcg tacggatgat gattatcaac cataccctac      3960
     cgtggacgaa tacagagtgg gtctggatat gattttgaag gctctccaag cagtatcctt      4020
     ttcggaggaa attaagcaaa ttaaaaggta ccagcgcact aatgatccta aacataggta      4080
     tgttggtaag cttcgaaatc taaatccgat tttggaacaa ggcatcttga gagttggagg      4140
     acgaatcaaa cacgctaacc ttacattcgc ccaactgcat cctatcattc ttccatccaa      4200
     gcatcatgta acgaagatca tcattgacga actgcaccag acgtacttgc atatcggtcc      4260
     aagtggatta ctatctcttc tgcgccaacg attctggata cttgatgcac gaaacagaat      4320
     acaacaacat ttgaggaaat gcgtacgttg tgtgaaaaca aatcctgcga agctgcagcg      4380
     ttacatggga gatcttcctg catatcgtgt tacacggact gacatgtttt cccgagtcgg      4440
     tgttgattat gcaggaccgt ttagtattaa aactggcaat ccacgtaaac cgattatcgt      4500
     taagggttac atagcacttt tcgtgtgctt atcatctaag gctatccata tggagttggc      4560
     agtagatctt tcaagccaag cattcatcaa tgttctgaag cgatttgtag ctcggcgagg      4620
     tgtacctacc ttaattttat ccgataacgc cactaatttt atcggagcaa actcggagct      4680
     tcaccagctg taccaacttt tccagaaaga atcaacaacg aaggccctca acgagtattg      4740
     tctgccatta gaaatcaagt ggcagtttat cccggctcgt tcccctgaat tcggaggtgt      4800
     ttgggaagct ggcgttaagt cggcaaaatg tcacatcaag cgagtagttg gcgagtcaaa      4860
     atacacatat gatcagtgga acactctcat aacccaaatc gaagccattc taaactcaag      4920
     gcctcttgtg ccaatgtcat ctgatcccag tgatcttaag gctatcagtc cagctcactt      4980
     gctaattgga agggagctaa ctgcaatccc ggaaccatcg ctggaaaatc tgaaaacgag      5040
     tacattatcg aagtaccaag aaatacaaaa gatgagggac gctttttgga ctcggtggtc      5100
     gttcgactat ttgcaagagc tgcagcgccg cccaaaacat aatcgtcaac acaaagaact      5160
     aaaggttgga gatatggtca tcttacgaga ggacaacttg ccacctcttc agtggagatt      5220
     gggcagaata gtgcagaccc atactggatc tgatggagtt accagagtgg tatctgtgaa      5280
     gacgtcgggc ggaattttca agagaaccac cgccaagctg tcattattgc cgagcgagaa      5340
     ttgagtttct accgaaactg caaggccggg gagaa                                 5375
//
ID   BEL-908_AA-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-908_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-200
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-200
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4563-4563 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 200 BP; 62 A; 34 C; 41 G; 63 T; 0 other;
     tgttcaggcg aacggtcact tcgaatacca aaaattgaat tactgaattg gtaaccctat        60
     cgtgtttatt tttttatgct attgttgttt actttgggtg agttagttag tggaccgacg       120
     cgaagagaat atagacgata tctgcaatca gtttaattac agtccatttt cagtacaaaa       180
     acggaagaaa gccccgaaca                                                   200
//
ID   BEL-909_AA-I repbase;    DNA;    INV; 5885 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-909_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5885
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5885
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5885 BP; 1699 A; 1275 C; 1520 G; 1391 T; 0 other;
     tttactcaaa gaattttaaa cattgttcgg aacctcacaa gatgtctcgg tcagcaccct        60
     tagatgacac ctattgcctg tgtgacttat gccaagagtc tccatcaatc gatcgtggaa       120
     tggtggcttg tgacgagtgc gagaaatggt ttcattactc gtgtgcaaac gtggacgact       180
     ccatcaagaa ccaaccttgg tgctgtgagc gttgcttggc gacgagggcc cgaaagcaca       240
     gaggaactag cacagcatca tcgaggcgaa agaaggcaaa ggatttggaa ctcaaacgat       300
     tggaggaaga gtatgccatg cagcaggagt atatgcggaa aaggtacgat gtgatggcgt       360
     tgtatctcga cgaaacggac gatgaggagg aaagcgttcg aagctcgaat gtgagcaacg       420
     ttgttcggac cagacagtgg attgataggc aaatagaggt aaaaggagga catagtgcct       480
     tgaagaccta cagtatgcaa gcgatcccag cagctggacc cagctacgtt ggcaatcagg       540
     gtgccgattt tcctgcgacc ccagtcggtc gcccagattc tcgaatacta ccacgacgaa       600
     atgaaccttc tgcagaaatc acgcacggca tacatcagat gcaccacgca ccgtcactat       660
     cggagttcca accgatggaa agtaacgtgg actcctacgg gctggggatg gtatcaagtt       720
     tagctcagtc tcaagagccc ctggaagata tgggtcgcag agcatcgcgg atcgcgcccc       780
     cataccctcc gtttcttcaa aatgtgccga tggaaaatca cttcaatatg aatgcgaata       840
     tagaacgagg aggtaggcaa cggccgttag tattgccgac ggttctggga gaaattccag       900
     tatgtggacc atcgccagct caaatagtcg caagacaggt ctggccgaaa aagcttccga       960
     cattttctgg agtagttgaa gaatggccca tatttataag ctcgtacgag aactctaatg      1020
     cggcttgcgg gttttcgcag gtagaaaact tgattaggct gcaagaaagc ctgaaaggcc      1080
     aagcgcttga cacggtacgc agcaggctgg tgctaccgga gaatgtgcga aaggtaatag      1140
     agacgctgcg gagaatctat ggaaaaccgg aaatgctgat tagatcgtta atttcgaagg      1200
     tacgaggcat agattccccg aaatcggaaa agctggacac agtcatcaaa ttcgggatgg      1260
     cagtgcaaca attgtgtgac catttagagg ctgcgaatca acaagatcac ctaagcaatc      1320
     cagttttgct gcaagaaatg gtagataaat tacccgccag tttcaaactg gagtgggtac      1380
     gatttaaaag ggcagcacca cacgtgtcga tccgcacctt tggggatttc atggaacagc      1440
     taatggacga ggcgaatgaa gtcaccttcg tgaatccgat tatggagccc tcagcgaaac      1500
     atgacaggaa aatttccaaa gagaaaggat atattcacgc ccacagtgat gctgccgcct      1560
     cggctactaa ctcgtctacc gacgagaagt tgaagaagtt ttctcaacag gcgtcggacg      1620
     atagaccctg cgccacatgc tctaagacag gtcaccgtgc tagaaattgt ccggatttca      1680
     aaaacctacc tcttggcgag cgtctgcgtc tagtcgccga tcgcaatctt tgttcactgt      1740
     gtttatacaa ccatggcaca atgcgatgtc gcaacaagct ccagtgcaat gttgccggat      1800
     gcggagcaaa acatcaccct ttgctacacc gaaccgaaag gatgccggaa acaagttgta      1860
     tggtacacca taggacatca aagtcttcgg tcatttttcg gatgataccc attatcctgg      1920
     taaatgggag taagcaattt cgcacttacg cgttttttga tgaaggctcc tctaggactt      1980
     tgttggagaa aaacgtagca gtcaagttgg gcctcaaagg aacgataagg ccactcaacc      2040
     tgacatggac gtctggtgtg actagaaccg aaaagacatc aatgacggtc aagttagcta      2100
     tttccggcaa agaacagctc gagcattatc caatgcacga agtgcacacc gtagatcgat      2160
     tgaatttgcc gcagcagaac gtcgatttca acgaactagt gaggaagttc gcgcatctaa      2220
     gagatgttga catcgaaaac caggagaacg cacagccaac catccttatt ggactggaca      2280
     atatcgatct tatggcaccg atagaatcgc gaattggtaa tgaaggggaa cctattgcat      2340
     tgcgatgtaa actcggatgg acgatttgtg gacccacaag cgcagcatta gcggaggact      2400
     attgcggcat acaccagtgt gacgttgcaa tggaccaagc cttgaagaac tatttcacca      2460
     tggaagacgc tggcgtcagt tgtccctacc tggtagaatc cgaagaagag cgtagagcac      2520
     gtactatcct gaaacagaca accgtcagaa ttggtcaacg gttcgagacg ggtctacttt      2580
     ggcgaatgga taacgttagc ttgccggata gctacccgat ggcctacagg cgactacagg      2640
     gtttggagag acgttttgca aaagaaccac agctgcgaga aaaagtcgtg agtgctatcg      2700
     atgacttcgt cgaaaaaggc tatgctcaca aagcatcgct ggaggagtta acggaagtca      2760
     aacccgacaa aacgtggtat ttaccattga acgtggtggt gaaccccaag aaaccggaca      2820
     aaatacgatt gacattggat gcggcagcca aaacaggtgg tgtctccctt aacgatatgt      2880
     tgataaaagg gccggacatg ctggtttcgt taccagtgat tctcaaccat tttcggtcac      2940
     gtaggatcgg cttcggcgga gacataaggg aaatgttctt gcagatacga atgcgagagc      3000
     aagacaaata attccagagg ttcttatttc ggcgccatgc tgattgtgaa ccagacgttt      3060
     atgttatgga tgcagttata tttggagcga aatgttcacc ctgtaacgcg catttcacca      3120
     aggataaaaa cgcgctagaa catgcaagtc gcttcccagc cgctgcagat gccatcatca      3180
     atcgacacta tgtcgatgat tactttgata gcgcagacga cgaagatgag gcaataaggc      3240
     gggctctaga ggtacgtcat gtgcattcga tgggaggatt tgagatccga aactggctga      3300
     gtaactcacc aaaagtgctc gctgccctcg gcgatcacgc agaagttgct aagacgctca      3360
     attacgacaa gacattggga cctgaacgag tgttaggcct gctttggaaa caagttgaag      3420
     atgttttctc gttcaatatg ggattgataa agaagttgga accttatctc attgacggag      3480
     cacggccaac aaaacgcata atcttgcgat gcgtaatgag cttctttgat ccggttggat      3540
     ttctttcgcc gctgttagta cacggtaaaa ttatcattca agagacgtgg agaagcaaca      3600
     cggagtggga ccagcccgtc actgatgaaa tcttcagaag atggcttgag tggaccaaac      3660
     tgttgccgag agtagaatca gtcaaaattc cacgttgttt tttcgggaac cattcgatta      3720
     gtagcatcaa aagcatacaa ttgcacattt tttcggatgc aggcgacgac gcctacgggt      3780
     gcgttgcata tcttcggtat atagtagggg acgacgtttg ctgttctttg gtgggttcta      3840
     aatcgaaggt cgcaccactc cagttaacat cgacacctcg actagaactc caagcagccg      3900
     tcattggagc acgattgctc aacacattat gctcatcatt gaatatccca atccaaaagc      3960
     gttttctgtg gagtgactca atgaccgtcc tatcatggat aagatccgat agtcgtaaat      4020
     acaagccgta tgtagcacac cgagttgcag agattcttag tactacaaac atggcggatt      4080
     ggagatatgt tccgtcgaag aaaaatgtag cagatgactt gaccaaatgg ggcactgcaa      4140
     caactttaga tccgggatgt aggtggttta cagggccatc gtttttgttg gaaaactccg      4200
     aatcatggcc agaacaacct gctagcaagt cattggttcc agacgaatta cggtcatgtt      4260
     acctgtttca ccacattcat ttgccggaac cagtcataga tgtgacccga atttccaagt      4320
     ggaaaatttt gctccgggtg gtggcgttag ttttccggtt tatctccaat tgcaggagga      4380
     gattgaacaa gctacctatt gaagcaatca acggcgatga agaaaggcct tcagtgattc      4440
     cagcagtgaa gatggtaatt caacaagcag aattggacaa agctcaacgt gtcctgtggc      4500
     gtgcagctca agtagattcc tttgctgatg aaataaaggt acttctgaag aacaaacaac      4560
     ttccacctag tgaatggatt cgcatcgaac gatctagtcg tttgttcaga acatcgccat      4620
     tcttagacga agatggagta attagaatgg aaggaagaac agccgctgcc gagttcgccg      4680
     caatttgtac acgatttcca gtgatactgc ctagagaaca cccaataacg atgaagataa      4740
     tcgacgattt ccatgttcgg tatgggcacg catcgaaaga gacaattgta aatgaggtgc      4800
     gacaagtctt tttcattccg aaactgcgca ccgttattgg aaaggtcatc aacagctgtt      4860
     tggtgtgcaa gttgcgtaaa agcaagccga ttatacctcg aatggcacca ttgccgattc      4920
     agcgaatgca gccattcatc agagccttta gttatgtggg cctagactac tttgggccta      4980
     ttgacgtatc cgtcggtaga cgtacagaaa aacgttacgt ggcacttttc acatgcctgg      5040
     cagtaagggc cgtacactgt gaaatcgcat ttagtctcag taccgaatcg tgtaaactag      5100
     ccattaggag gttcatccgt cgacgtggat ctcctgttga aatatttagt gacaatggca      5160
     cgaatttcaa gggcgccagt cgagaactaa gagaagagtt gaagaagatt gatttggact      5220
     gtgccgatac tttcactgac gctaggacca aatggacctt caatcctcca tccgctcccc      5280
     atatgggtgg tgtatgggag cgaatggtga gggctgtgaa agaggcgatg gcggtaatga      5340
     acgatgggcg gaaattaaac gatgaaattt taatgacaac gttggctgaa gcggaatact      5400
     tgattaattc gcgcccctta ttgtacgctg gtacggagga cacagaatta gatgttataa      5460
     cacctaacca tttcctgtgt gggagctctt cgggacaaca tgaaccatat cgatcaccga      5520
     tttcgttagc cgaagaactg aagagcagct acaaacggtc gcaagccttg gcaaaggagc      5580
     tgtggaaccg atggtgtaag gaatactttc caacgttgaa ccaacgaagc aagtggtatg      5640
     aagaatcccg tacattgaag gtcggtgact tagtcctcgt gattgagtct aaggaccacg      5700
     ttggagtccg tgggtttgtg gaagaggttt tcactggatt ggatggtcgg gtaaggcagg      5760
     ccatagttcg gaccagtacg ggttgttttc ggcggtcagt gtcgaaacta gcggttctag      5820
     aaataggaaa taaacctgac gaggtatcta acgataagca ggaccagagt ttatgggctg      5880
     gggaa                                                                  5885
//
ID   BEL-909_AA-LTR repbase;    DNA;    INV; 650 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 26.08, Created)
DT   23-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-909_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-650
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-650
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4564-4564 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 650 BP; 215 A; 91 C; 152 G; 192 T; 0 other;
     tgtacgaacc gctaggtgtg caccgttcta agaaccccta tgacgattgc caaatgtaga        60
     gagaacgtgg aatgctctta ttttctccaa tatgcataag gacagcttga taatgtaaag       120
     agaagaagaa gacaagtgat tgtgagttga tgccatatag cgtggtcgtt aagatttcga       180
     gatttattgg aataactaaa tagtagagtt tgttcttatt cgagttgttt gaaggtgaga       240
     ccgaatatta aacgttgatg aaccataaat gatgatagat atgagggaaa gtgtaattaa       300
     tcgattctaa attcgccaga ttagtcgccg gtgggagaac aaaagcctat agaacagttg       360
     cattgaatac gtttatgaat tataacgtaa gtccgatcgg ggctcgtttg atggttatgt       420
     ggaaccagta atgatgtcaa ttaattactt taggatcgca aaggggaatt cggactatca       480
     ccagggtgct gagtaaaaat tgtcggttgt gggcttatct tgaggaaaac taaaattgta       540
     agaaactagt tgaattacta attataaagt tactgaataa attgaatttt tcagctttga       600
     gcgtattcac agtaaacgct acagagaggt ttcccgttaa aatccgaaca                  650
//
ID   BEL-90_AA-I repbase;    DNA;    INV; 5968 BP.
XX
AC   supercont1.287;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-90_AA_;
KW   BEL-90_AA-LTR; BEL-90_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5968
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.287; Positions   40162   46129.
XX
CC   Positions [5017-5574] - Integrase core
CC   'ATATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(22..1965,1969..5967)
FT                 /product="BEL-90_AA-I_1p"
FT                 /translation="MKPAEDGHNLEKTGYDCAHCEKPNHADDNMVLCEKCQ
FT                 KWFHFMCAGVTSDIEKLPWSCDDCRKASKTADNTSIQGESGTILEVSDSTD
FT                 QRANNDTKTSTADEDDEEERKHQKELLLMKQKFERQFEREKEKMMMQIRLE
FT                 REMLERKKAVEAELHKMRSELYEEFHGSLDPLDQEKGAVGGNILPSQEHIE
FT                 ADLEKLWRDKLKFQNDQLRPVADPRGAFPKFSTPKDVPTQLGTINNHQESS
FT                 ESGPKEVTPLRNPQVPASKVNKPSLPIPSFRQPEVDSPNEVLMHQESQPVT
FT                 NANPIPTVLNDRRHQVLTVYQEQELTRAQIAARKGPFAKLPVFTGRPEEWP
FT                 LFISSFNNGNAACNWTDLENLGRLQESIKGPALEAVRSRLLLPESVPRVIE
FT                 TLRHLYGRPEQLLHSLMQKARRADPPRTDRLTTFISFGMIVQQLCDHLVAS
FT                 GMVDHLVNPMLITELVEKLPPSTKMEWVRHKRQQPAVDLSTFSDFLSEIVS
FT                 EATEATLYTNPRIDGRPNREGKEKRSRIKETEGFLNAHVGVEQSSIPSINQ
FT                 HNRRPCRGCNSMEHRTRVCEDFRKLVWGDKVKIVEKWKICKMCLNEHGESR
FT                 CRFKGHCNVGECKERHHSLLHPPNSIAPLPTNCHVHNSEQHPVIFRMVPIL
FT                 HHEGRSCDVIAFLDEGSSYSLMEGSVADQLKLKGAWEPILVKWTAGMSRLE
FT                 RESRRVDVSISSSGSNERFLLRNVHTVQELQLPEQKIRFAEVAARFKHLCG
FT                 LPVADCLGGSPKILIGLKHLHVYAPLESRIGNPGEPIAVRTRLGWTIYGPQ
FT                 GNGNVATGFAGHHTTGELSNIDLQELLRKHFTLEDSGLVVNVLPESNEDRR
FT                 ARMLLEQTTTRVGEHFETGLLWRNDQPQLPDNYQMALKRMKSLEYKLAKNP
FT                 ELAQNVEKQIEDYQRKGYAHIATNEELMEGEAGKVWYLPLNVVLNVKKPGK
FT                 VRLVWDAAAAVQGRSLNSELLKGPDLLSSLPSVMCPFRERPIAFGGDIAEM
FT                 YHQVRIRECDKSAQRFLYRPNASGPPTIYVMDVATFGSTSSPCSAQYIKNL
FT                 NAQEYAKEFPDAVEAIVNKHYVDDYLDSTFTVREAIERANQVAFIHSKAGF
FT                 NIRNWVSNSTEFLQHFDGQPDNRLIHFNCDKSSYTERILGMSWNTSKDVFV
FT                 FAAVLRDDLQSYLRGEKLPTKRTLLSIVMSFFDPLGLYTLFTVFGKMIIQD
FT                 LWRNGCSWDETIDADSAKKWSRWIALVPQVQAMEIPRCYFSKVKPSDYQNL
FT                 ELHVFADASEEAYGCVAYFRIFVNGQPRVALVSAKSKVAPLQYTSIPRMEL
FT                 LAAVLGARLATAVKANHSEKVTKVIFHIDSATVLSWIHSDHRKYKQFVAYR
FT                 IGEILSLTNPHEWIWVPTKNNIADVLTKWGKNGPPLDSNGEWVRGPEILYK
FT                 ANEEWFERELPAPGVREELRAHHLFHEIVFSQNLVDTTRFSRYAILVRSLA
FT                 CVFRFISNCRKRVQGQPIETFQANPKLGKSVIRDVFSRKVPLKREEYRLAE
FT                 NYLWRTAQQEGFADERKTLLKNKELPQSKWHFIERSSPLYKLAPFLDEEGV
FT                 IRMEGRSAYAEFISFEQRFPIVLPKGHDITSKLLLHYHEKFGHANRETVVN
FT                 ELRQRFYVPHVRVAILRVMKDCSRCKIQRCRPEVPRMAPLPVQRLTPMLRP
FT                 FSYVGVDYFGPVVVTVGRRSEKRWICLFTCLVTRAIHMEVAHSLNSQSCVM
FT                 AIRRFICRRGAPLEIFSDNGTNFLAASKELSQKVRYIELECADIFTDARTR
FT                 WNFNPPAAPHMGGIWERLVRSAKEALKALHDGGKLTDEILLTVLTEAEDMI
FT                 NSRPLTYVPQESADVEALTPNHFLRGLPSGEQDQVRTLTNSAEALRDNYKQ
FT                 SQKLADVLWQRWLTEYIPTINLRSKWCKEQDPVNEGELVYIVDGNNRRTWI
FT                 RGIVVKVIRGIDGRIRRALVKTSKGVYRRAVAKLAVMELRSKSDPISDSGP
FT                 ELREGE"
XX
SQ   Sequence 5968 BP; 1734 A; 1321 C; 1496 G; 1417 T; 0 other;
     aaattctcaa aaattattga tatgaagcct gcagaagacg gacataacct tgaaaagacc        60
     ggctatgatt gtgcgcactg cgaaaagccg aatcatgcag atgataatat ggtgctttgc       120
     gagaaatgcc aaaaatggtt ccattttatg tgtgctggag taacgtcgga catcgagaag       180
     ctcccttggt cgtgtgatga ttgccgaaaa gcgagcaaaa cagcggacaa tacctccatt       240
     caaggcgaaa gtggtacaat attggaagtt tccgattcga cggaccaacg agcaaataac       300
     gacacgaaga cgtcgacggc cgacgaggat gacgaagaag aacggaagca ccagaaggag       360
     ctattgctga tgaaacaaaa atttgagcgg caattcgaaa gggaaaagga aaaaatgatg       420
     atgcagatcc gtctggagag agaaatgctg gaaagaaaga aagctgtaga agcggaatta       480
     cacaagatgc ggagcgagct gtacgaagaa tttcatggca gtctcgaccc cttggaccag       540
     gagaagggcg ccgtaggtgg taacatctta ccaagtcagg agcacattga agcggatttg       600
     gaaaagttgt ggagggataa gctgaaattc caaaatgatc agctcaggcc tgttgctgat       660
     ccccggggag cttttcccaa attctccacc cccaaagacg tgccaacgca actgggtacc       720
     atcaacaatc atcaagagtc gtcagaaagt ggtccaaagg aagtaacgcc gcttcgaaac       780
     ccgcaagttc cagcaagtaa ggtaaacaaa ccgtctttac cgattccttc ctttcgtcaa       840
     ccggaggttg attcaccaaa cgaagtactg atgcatcaag aaagccagcc cgttacgaat       900
     gccaatccga taccaacagt cttgaatgat cgtcgacatc aggtactaac cgtatatcaa       960
     gagcaagagt taacaagagc ccaaatcgca gctcgaaaag gaccctttgc taagctgcca      1020
     gtgttcacag gccggccaga agagtggcca ctgtttatca gcagcttcaa caacgggaac      1080
     gcggcttgca actggactga cctggagaat cttggaaggc ttcaagaaag catcaaaggg      1140
     cctgcactgg aagctgttag aagcagatta ttgctgccgg aatcagttcc aagggtgatc      1200
     gaaacgctac ggcacctcta tggcagaccg gaacaactgc ttcattcatt gatgcaaaag      1260
     gcgaggagag cagatccacc tcgtactgat cgtctcacca cctttatcag ttttggaatg      1320
     attgttcaac aactatgtga ccacctggtg gcatcaggaa tggtcgacca tctcgtaaac      1380
     cctatgctca ttacagagct tgtagagaag ttgccaccta gcacgaaaat ggaatgggta      1440
     agacacaagc gtcaacagcc agcagtggac ctcagcacgt tttcggattt cctttccgaa      1500
     attgtttcgg aagcaacgga ggccacactc tacaccaatc ctcgaatcga cgggcgaccc      1560
     aatcgggaag gcaaggagaa aaggtccagg atcaaggaaa ctgaaggatt tctaaatgca      1620
     catgtaggag tggagcagtc atcgattcca tcgataaacc agcacaatcg caggccgtgt      1680
     cgtggatgca atagcatgga acaccggacc cgtgtctgcg aggattttcg taagttggtc      1740
     tggggcgata aagtaaaaat tgtagagaag tggaaaattt gcaaaatgtg tttaaacgaa      1800
     catggcgagt cacgctgccg atttaaggga cactgtaacg tcggcgaatg caaggaaagg      1860
     caccattccc ttctgcaccc accaaactca attgcaccac tacctacaaa ctgccacgta      1920
     cacaattcgg aacaacatcc tgttattttt aggatggttc cgatttaact acaccacgaa      1980
     ggacgaagct gtgacgtcat tgcgttttta gatgaaggtt cttcttattc ccttatggag      2040
     ggtagcgttg ccgatcaatt aaagctaaaa ggcgcatggg aaccgatact tgtgaagtgg      2100
     acagcaggta tgagtagact agaacgagaa tctaggcgtg ttgatgtctc tatttcatca      2160
     agtggatcga acgaaaggtt tctcctgcga aacgttcaca ccgtccaaga gctccaatta      2220
     ccagagcaaa agatccggtt cgccgaagtg gcggcccgtt tcaagcacct ttgtgggtta      2280
     ccagttgccg attgcctagg tggttctccg aaaattctta tcggcctaaa acacctacac      2340
     gtgtacgcgc ctctggagtc gcgtatagga aacccaggag aaccaattgc agtccgtacg      2400
     aggcttggct ggacaatata cggccctcaa ggaaacggta atgtggcaac ggggttcgct      2460
     gggcatcata cgactggtga attgtcaaat atcgacctcc aggaacttct tcgaaaacac      2520
     ttcacgttgg aggattctgg cttagttgtt aacgttctac cagagtccaa cgaagatcgt      2580
     cgagctagaa tgttgttaga acaaacgacc acacgagtcg gtgagcactt cgaaactggt      2640
     cttttatgga gaaacgacca acctcaacta ccggataact accagatggc actcaagcga      2700
     atgaagagtc tggaatacaa gttagcaaaa aacccagaac tggcgcaaaa tgtggagaag      2760
     cagattgaag actatcaacg aaaaggatat gcccatatcg ctaccaacga agaattgatg      2820
     gaaggtgaag caggcaaggt ttggtatctt cctttaaacg ttgtgctgaa cgtgaaaaag      2880
     ccgggaaagg tccggcttgt ctgggatgct gcggcggcag tacaagggcg gtcgttaaat      2940
     tctgagctgc taaaaggtcc cgatctttta tctagccttc catctgtcat gtgccccttt      3000
     cgcgagcggc caatcgcctt tggtggtgat attgctgaaa tgtaccacca ggtacgcatt      3060
     cgtgaatgtg acaagtcagc ccagagattt ttgtatcggc cgaatgcttc gggaccccca      3120
     accatttatg ttatggatgt cgccactttt ggctcaacaa gttcgccttg ttctgctcaa      3180
     tatattaaaa atttaaatgc ccaggagtat gctaaagagt tccctgatgc ggtcgaggct      3240
     attgtcaaca aacactatgt cgacgactat ttggactcaa cgtttacagt tcgcgaggct      3300
     atcgaacggg caaatcaagt cgctttcatc cattcaaagg ccggattcaa tattcgaaat      3360
     tgggtttcga acagtacgga atttctccaa catttcgatg gacaaccgga taatcgattg      3420
     atccacttca actgcgacaa gtccagctat acggaaagga tcttaggtat gtcgtggaat      3480
     acttcgaaag atgtcttcgt gtttgctgcc gttctgcgtg atgacttgca atcataccta      3540
     aggggagaga agctgccaac caaaagaaca ttgttaagta tcgtcatgag cttttttgat      3600
     ccgctgggtc tgtatacgtt gtttactgtc tttggaaaaa tgatcatcca agacctttgg      3660
     aggaatggct gctcatggga cgagacaata gacgctgatt cggcgaaaaa atggtccaga      3720
     tggatagcgt tggtgcctca agtacaagct atggagatcc cgcgctgcta cttctcaaaa      3780
     gtgaaaccgt ctgactatca gaaccttgaa ctgcacgtat ttgcagacgc gagtgaggag      3840
     gcctatggat gcgtcgctta ttttcgaatt ttcgtgaacg gacaaccgag agtagcgtta      3900
     gtgtcggcga aatccaaagt ggcgccacta cagtacacat ctatccccag aatggaactc      3960
     ctcgctgcgg tactcggtgc tagattagct actgctgtga aggccaacca ctcggagaag      4020
     gtgacgaagg tcattttcca tattgactcc gcaactgtgc tttcctggat ccattcagac      4080
     cacaggaaat ataagcagtt tgttgcttat cgcatagggg aaattctgag ccttactaac      4140
     ccacatgaat ggatttgggt ccccacaaaa aacaatatag ctgatgtgtt gacaaagtgg      4200
     gggaagaatg gcccaccgct agactctaat ggagaatggg tgcgtggtcc tgaaattctt      4260
     tacaaagcga atgaagagtg gttcgaacga gaattaccag ctccgggcgt gagggaagaa      4320
     ttgcgagctc atcacttgtt ccacgaaatt gtgttttcac agaacctggt agatactact      4380
     cgattctcgc gctatgctat tctggttcga agccttgctt gcgtatttcg tttcatttcg      4440
     aactgccgga aaagggttca agggcagccg atcgaaacct ttcaagctaa tccaaaattg      4500
     ggaaagtcgg ttatacgtga tgtattttcc agaaaagttc ctcttaaacg tgaagaatac      4560
     cgactagctg agaactactt gtggagaaca gcgcagcaag aaggtttcgc tgatgaaagg      4620
     aagacgctgt tgaagaacaa agaattgcca caatctaagt ggcatttcat cgaacgttct      4680
     agtccgcttt ataaattggc tcctttcctt gatgaagaag gcgtgattcg tatggaaggt      4740
     cgctcggctt atgctgaatt catttctttc gaacagcggt tcccaatcgt gctgccaaag      4800
     ggtcacgaca ttacctcaaa actgcttcta cactaccacg aaaaatttgg ccatgcaaac      4860
     cgtgagaccg tggtgaatga actgcgtcaa cggttctatg tcccacacgt tcgggtggcc      4920
     attttgcgag tgatgaaaga ttgttcgcgg tgtaagatcc aaagatgtcg tccagaagtt      4980
     cctcggatgg caccactccc agtgcagcgc ctcactccta tgttacgtcc tttcagctat      5040
     gtaggggttg attatttcgg ccctgttgtc gttacggtag gacgacggtc cgaaaaaagg      5100
     tggatctgcc tgttcacatg ccttgtaacc agagccatcc acatggaagt ggcccacagc      5160
     ctaaatagcc aatcgtgtgt tatggctatt aggcggttta tttgtagaag aggtgcccct      5220
     cttgaaatat tttcagataa tggcacaaat ttcttggctg cgagtaaaga gttgagtcaa      5280
     aaggttcggt atattgaatt agaatgtgct gatatcttta ccgatgctag aactcgatgg      5340
     aattttaatc caccagcagc gccccatatg ggtggaatat gggagaggct agtaaggtcg      5400
     gcaaaggaag cactgaaagc tctacacgat ggtgggaaat taacagacga aatcctgctt      5460
     accgttttaa ccgaagctga agatatgatt aattcacgcc ctctcacgta cgtaccacaa      5520
     gaatcagccg acgtcgaagc tcttacaccg aaccattttc tccgtggact gccttcgggg      5580
     gagcaagacc aagttagaac tctaacgaat tcggctgaag ctttacggga taactacaag      5640
     cagtctcaaa agttggcaga cgtcctgtgg caaaggtggt tgacagagta tataccaacg      5700
     attaaccttc gttccaaatg gtgtaaagaa caagatccgg ttaacgaagg agaactcgtg      5760
     tatatagtcg acggaaacaa ccgaaggaca tggatcaggg gcatcgtggt gaaggtcatc      5820
     agaggaatcg atggaagaat acgtcgagca ttggtgaaaa catccaaagg agtgtatcga      5880
     cgtgcagtcg ccaagcttgc ggtgatggag cttaggagta aatctgatcc aatatctgat      5940
     tctggaccag agttacggga gggggaat                                         5968
//
ID   BEL-90_AA-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   supercont1.287;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-90_AA_;
KW   BEL-90_AA-I; BEL-90_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-338
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.287; Positions   39824   40161.
XX
SQ   Sequence 338 BP; 124 A; 53 C; 70 G; 91 T; 0 other;
     tgttagcacc ccccactggg cacaacccta gtgggcttgt cgaacagtga caggtctgag        60
     aaatgtcaaa agcaattgaa gtttagggat caaaaataaa agaagaagaa ctggattgat       120
     gctgagagtt gctaaaattt ggaatagttg taaaatctat tggaaattgg aatttaaagt       180
     gaactgaaaa taaaattaag cctaaagttt tcggatttgc tagaattcac aacgccacaa       240
     taaaatattt gtcaggtcac agaaaccaca tggagaacat caataatttt tgagctgtat       300
     gctacaaaaa ggtgtatttc ttctacgtgt cctgaaca                               338
//
ID   BEL-910_AA-I repbase;    DNA;    INV; 6130 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-910_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6130
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6130
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6130 BP; 1833 A; 1480 C; 1473 G; 1344 T; 0 other;
     agttaataaa ttcgtttacg cgaacgatgt caggtaggaa aagtggaaaa gatggcaaaa        60
     gtggttcaaa aggtgtgcgg tcgaaagaaa agcagtcaga agcgatcaat atcagtagcg       120
     aaactggtgt agtggtggtg gtcactgacc aagatattaa tccgactgaa ggccaacagg       180
     cttgtgatcg tatgccggaa caaagctgta cgttctgcca ggagacggat aacgacgaaa       240
     tggtccaatg cgataagtgt gatagatgga tccatttcgc gtgtgtcggt gtcaccgaag       300
     aaatcgcaga taaaagctgg agttgtccca aatgtaaaac tacaaccggg ttcctgccgc       360
     cgttatcttc tgtgaatcga cgtccgacag caacttcaag ccataccgga tcgcaaaagc       420
     cagccactac caaggaacgg ttcgtctctg aaacctcact tgggatcaac aaaaaagtac       480
     gcgaagcact gtcggaacca atagggaaga acgtaggcgt atcctgcgat aagacagccc       540
     attcgatgac gtcatcgtca tcacgcagat ctcttctgca actacagctg caacggctcg       600
     aggaagagcg ggaatacgag aagcaacaag cagagaagta tcgagcctac ttggacagga       660
     aatacgaatt attggaggag atccacagca gaaccgggtc cgaatgtagc gaatcacaaa       720
     accgagtgaa acagtggatt catgatacca acaatattcg cgagatagaa gtatcaaaca       780
     tacggattcc agaagttttc gatctacaaa gacactcgac gcaaaacttc tcagggcaag       840
     atcaagtcgg ctctacgccg ccacccaatc aatatcttca caatcggatt gagaatgaag       900
     aacttgagcg tagcgaccgt gacagtcgtc gtcgtcgtga tcaacccttc cgaccgttgt       960
     caacagacag gaacctcgta gatgaacaac tccgagacca gcatagaaga gcgttacgag      1020
     agacagatat ccattcgggg cgtcatgaag aagatttcga gccgtcatcg ttttcccggc      1080
     agcagttggc agcccgccaa ggaatatcta aggatttgcc caagttttcc ggcaagtttg      1140
     aggagtggcc ggtctttatg tctatgttca acagcacaac gaacatgtgc ggtttcacga      1200
     acgaagaaaa cctcattcgg cttcagaaat ccctggaagg taaggcgtat gaaacggcgc      1260
     agagtctact gatgcaccca tccaatgttc cggccatcat gaagattctg aaaaggagat      1320
     tcggccaact tgaagcggtc gtccactcct ttatacagaa ggttaatgcc ctaccggcaa      1380
     tacgagaaga acaactagag acgttggtgg agttcgcaat aaacgtgcaa aatttctgtg      1440
     ccaccgtaga tgcatacgaa ctggaggatt acatgtacaa tgtgtctgtt ctacatcagt      1500
     tgatgtcgaa gcttccagcg acgctgaagc tggactgggc cagatatcga caaaatcttc      1560
     ggcgggtcaa cctggcgacc ttcggaaatt gggcgtattc actggccgaa gctgctagca      1620
     ccgttgtgat tccagccgat gcgagcgagt taaaggcaac acgcaacgaa gtacgcggga      1680
     ataagaaatc gaacgcttat atcaatgctc actctgagac aatctcagaa tccggcgacc      1740
     gtccaaaaca tgttaacttc gatgtaaatc agaaagaaag cagccacacg tcagcctcaa      1800
     aacagttggt cagcatgtca gatgcttgtc taatatgtaa aggaggatgc aaaagcgctt      1860
     caaagtgcaa acaattcttg gaactgtctc gtgaatccag atgggctatc gtaagagaat      1920
     tcagactctg tagaagttgt cttcaccggc acaaaggagg atgcgatgcc aaactatgtg      1980
     ggagaaatgg atgcacttac aaacatcatg agttgcttca taatgatgaa aaggtacaaa      2040
     aatctcgtag tccaatagca caagtggcaa ctgcacctca aattcaggtc ccaagacaac      2100
     cggattcttc cgcggaagca ccaatgcacg attgtaacac ccatcaagcg aagtctaatg      2160
     cagtgctatt ccgctatata cccgtggtac ttagtggacc tcatggctcc atccacacgt      2220
     atgcattctt ggatgaaggt tcacatctaa gtctgatgga tcaagaatta gcggaccagc      2280
     tcaagctgaa aggtactacg atacctctat gccttcgttg gacagggggg acacagcggt      2340
     gcgaaaagga ttcgcaatct attacactcg atatttccgg taccggcaaa gccgctaaaa      2400
     gcttccaact aactggagtg agaaccgttg aaaggcttct gctgccgcat cagacactcg      2460
     acgtagaaga attgggccat caatatccac atctcaatgg acttcccatc gattcctact      2520
     acgatgctcg cccaaggatc cttatcggga tgaaacacgt tcaggtcagc cttgtactta      2580
     agagtaggga aggaaacatt ggcgagccag tagctgtgaa aacgcggttg ggctggatag      2640
     tatgcggtgg taaagacacg gaaggagacg atgctggcaa cctagtacac tataccttcc      2700
     atgtgtgttc ttgcgaacgg acaagagatg acgagctaca tcaggccgta aaaagtattt      2760
     ttccctcgat aatctcgcca tcagaaaacc ggaaaaactt cttctttctt ctgaagatca      2820
     gcgagcgcaa gatcttttgg cgcaattgac gacatatgat ggagaacggt acacaaccgg      2880
     actactatgg cgtcacaata acactcgtct gccagacaac tacgcaatgg cactgcgacg      2940
     acaccaatgc cttcaaagac gcctcgccaa agatcctgaa atagccggaa cgttacacaa      3000
     aatgatagcg gactacgcca ccaagggata tgtccgacag ctctcggacg acgaaatcag      3060
     tcaacggtat tccagagtgt ggtatctacc agtgtttccg gttgtgaatc cgaacaaaaa      3120
     gtgaggctcg tttgggattg tgcagcttgc tcttacggtg tttcgttgaa ctccgccttg      3180
     ttaacaggcc ccgatcaact ttgttcacta ctgacgatct tgctgcaatt tcgagaaggt      3240
     agagtaggcc ttactgggga catacgagaa atgttccacc aagtacgcat tcaagatacg      3300
     gatcaacaat gccaaagatt cttgtggtgg aacgaaaagg gagaaattgt gatctatgtg      3360
     atgcaggtca tgaccttcgg ggcttgttgt tcaccctgct gcgcgcagta cgtcaaaaac      3420
     atcaatgcag agcgtcatgc agcggagttc ccgaaagcag ccgaagttat tcagaaaaag      3480
     aactatgtgg acgatatgct cgttagtctg gaaactgaag aagaagctgt gaagatagca      3540
     agagatgtga agtacgttca tcaacaaggc ggatttgaga tccaaaattg gattagtaat      3600
     tcaccagcag ttctaagggc cctaaacgag aaagatgtag acctggtggg cgagaaagat      3660
     ctagatttgt cagcagaaat gagcactgag aaagtcttgg gcatgtggtg gtgtactgcc      3720
     acagacacat tcacatacaa aatcgaatgg aaccgctacg accgtgctct tttagaaggc      3780
     cacaggcggc ctacaaaacg agagattcta cgggtgctca tatccatatt cgacccactt      3840
     gggctaatcg gtcacttcat gatgttcctg aaggtgctgt tacaagaagt gtggcgttcc      3900
     ggtgtgcagt gggacgatga gataaccgat gatgcattta taaaatggaa acagtggcta      3960
     agggtattgc cgcaggtaga gcatgttcat gtgcccagat gctatcgatc attttcccat      4020
     gactacgaca ataatccaga gctccataaa tttgctgatg ccagtgaatg tggcatgtcc      4080
     gccttcacct ttctgaggtt catcaggaac ggaatcgtcg agtgccgaat cgtcgccgcc      4140
     aagacaagag tgacaccgct gaagttcgta tccatcccac gtctggaact acaggctgca      4200
     gtaataggcg ccagactggc atgtacgata gcagactctc tgtcgataac gatatctagc      4260
     aagtactact ggactgattc gcgcgatgtg ctctgttggc ttaactccga ccaccggcga      4320
     tatacacagt acgttgcatt ccgtgtcagt gaaatcctcg agactaccga tgcaaacgag      4380
     tggcgctggc tgccctctaa gatgaacgtt gcggatgatg gtaccaaatg gaacacctca      4440
     ccagatctta caactcaaag cagatggttt gtaggcccgg aattcctaca acaaagtcag      4500
     gcaaattggc cacaacatca gacgaagaac agcgctacaa acgaagaacc tcctcccagc      4560
     ttgctcgcaa atcacatttc ctgcgaacct gccataaatc cctgcaaatt ctctagctgg      4620
     agacatatgc tgaacgtgac tgccatcgtt ctacgatttt cagccaactg tggtcggaga      4680
     atagccaagt ctttgactat aaccgggaca ccaacggcgg tcgaattaag aactgctgaa      4740
     gcatatcttc tacgtgcagc tcaatgggat ggttatccag aagagatcgc ttgcttggaa      4800
     aaggcacagc agaaatcaaa cagctgtcaa acggtaccaa agcaaagtag cctgtatcaa      4860
     ttgacaccgt ggctagatag tcaaggactt atgcgaatgc gaaccaggat tggtgcctgt      4920
     cactatgcaa cggaagacgc caagaaacca ataattctac cacgtgacca ctctactacc      4980
     aacctgataa ttacacacta ccatcaaaaa ttccaccacc agaaccatga atcagtgatt      5040
     aatgagcttc gccaaaaatt caatatccca cacctccgcg cttcttatac cagggtgaag      5100
     aaaaattgcc aacaatgcaa gaacgaccat gccactccac gtccaccaat catggccgac      5160
     ctcccaccgg cgcggctagc agcatactca ccacccttca cacacacggg tattgatttt      5220
     ttcggaccat acgaagtagc aattggaagg cgaactgata aacgatgggg aatgctcgca      5280
     acctgtctaa caatccgagc aatacatatc gaagtagtac actctctgag cactgactcc      5340
     tgaatcatgg caattcgcaa ctttatctca cgtcgtggta cacccaacgt tatatacagc      5400
     gatagaagaa ccaactttat cggtgcatct cgtcagatga aagaggcagc tgctgcagta      5460
     aacgtagacg aagtgatgaa ggagttcgta actgtagaca cagcttggtc cttcaaccca      5520
     cccctcgcgc cacatatggg tggcagttgg gaaagactga taggtagcgt gaagcgaaac      5580
     cttcaaacga tcaatccacc acgaaaccca accgatgaag tgctgcgaaa cacactaatc      5640
     gaagtcgaaa acataattaa ctccagacca ctgacccatg tcccggttga tgatgacagc      5700
     gctcccgctt tgaccccgaa ccattttctc cttggttcat caaacggtat caagccacat      5760
     tctaccattg acgacagcag tgctgctctt cggcagaata tcttggcctc gcaggtgctg      5820
     gccaacaggt tttggaagcg ttggctaagc gactatcttc cagaaatcac caagcgatct      5880
     aaatggttca accgaactga tccagtaacc gtaggtgatc tagttgtcat agccgaccca      5940
     aaattacccc gcaactgctg gcctaaggga aaagttatcg aggttcatcc aggcaaagat      6000
     ggagaagtgc gctcggccac cgtacgaaca tccactggag tatacgtgcg ggcgaccacc      6060
     aagctagctg ttctggacgt taggcgcgat ggaagtaagc cggcctaaac gctggcgtac      6120
     caggggggag                                                             6130
//
ID   BEL-910_AA-LTR repbase;    DNA;    INV; 758 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-910_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-758
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-758
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4565-4565 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 758 BP; 268 A; 155 C; 120 G; 215 T; 0 other;
     tgtgagctgt cctaagggaa agcgcgcgcc cattgtgttt gcgcccctgt atcagctctg        60
     cgtctgctgc tctggcgaca ctggttggaa tgacagagca accgcctgtc acaaccgtga       120
     gtaaaaggca aaacaaaaag ttcttgtgta ccacgctatc atacttaatg ctaccttaag       180
     ctaaattaaa tagttatcct atgagagttc ttaaataatt taaactaagt gcgaatgaag       240
     tgaggtaatt gaattcccaa aatgtttaca tgccttaaac taatgaattc tttaaaatta       300
     gcgcctaaaa ctactgtgta aaatctacct cagagtgtct ataacctaca tttgcataca       360
     cctaaattga taccggtaag acattacaaa ctattgaatc tattcgaaat tacaaaacaa       420
     gaatccttac agctattaga acaaaattgc aaaatctcct gactccctag actacggatt       480
     aaaacgggca ttaaacgtaa gttatattac atgcaaacct aatgaaatat ctgaaaccta       540
     aatgtactta tactatccat tcctaacact ataatttata cttaaaacta ttatgaacac       600
     atgaagtgtg aacctataat taaaatgagt cccgattcca tgcaggaatt tattaatctc       660
     ccaaataaag agccgtgaac tacaaattgc tctggaggtt aattaaacgg aaaaaccctt       720
     tcagtccgag tgaccatttg tcgaaactaa tttcgaca                               758
//
ID   BEL-911_AA-I repbase;    DNA;    INV; 6652 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-911_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6652
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6652
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6652 BP; 1742 A; 1686 C; 1513 G; 1711 T; 0 other;
     attttggtgc cgtgaccagg atcggttgca aggaacgcaa ccgcgaacca tcactccaac        60
     gtaacgccga cgacgaatct gaaaacgcca agcgcattgt aagccagcgg aacaatagtt       120
     gatttgttct aacaagtgcc atccgccatt gcgtttatcg acggccttcc cagtatcatc       180
     gatatcatcc aagtccaaga acgattagat tcacgtcata caaggcattg agactgcctt       240
     acgcaggtta gtctctgtct aatcaagtat ttatccacgc tggtgcgctc tagattgcac       300
     ttttccttcc tttctcgagt gctgtggccg aaaatatcac cagtggttct ccattcatcc       360
     gcgaacggtc tcatcatcct gtgttgaaga gttgaggagc agctattaga tgctttggat       420
     gatctctcgc accaatcgcg tcaagcagta cttcggcaaa acttctggtc cgtgtgagct       480
     atcatattga ttcaaggcta gttactagcc tacgacaggt tagtaccagt ccaaccttta       540
     ttccttccgc gctggtgcgc tttagagttt gttttatttt cttccacgat tccgggattc       600
     aacttccgtg aacaccgtgt cgtctaccgg acagattaat caacagttct ccggacgatt       660
     ttgccaaaat tcatcctgcc tgcggcatcg atattgacat atctatttgt caattggtag       720
     cgcacggtcc gcgctaccat ttggaaagga ttttgcgtga tcaggttatc caaggattcc       780
     agttcttgtg cacggggcac ttcccagaaa ttctgctgca acgttcaaaa gcaagaaagg       840
     ttatctgttc ctgattatac tagtaccagc ctgcgaaagc gatcactacg tccagtgatt       900
     tccaactgac atcccacgta ccattcccga acgatattgg tcgctcatcc caaggcttcg       960
     acatcacccg ctagcaattc ttcgctagta ttctggttta aacaaacgaa atccatcgta      1020
     aagtttaaac ggagcatcgg actgttccag tcggcagatc gacaattcaa ggcatatatt      1080
     cgccttggaa aaggtacgta cctctccaag agctttcaat tttccatccc aggtctacgg      1140
     gtcttgattc tccccaggaa acgctcgcct ccaaataaat cctttggcgc aaacgtcggc      1200
     gtacgtgagc ttcctccaag atgtcaacgg accaagagca acggcagtta gttctacggc      1260
     gcacatcttt attggcctcg ctagggcgag cggaacaatt tttggcggca tatgaagaac      1320
     agcgagacag gctcgaggtg cagctgcgga tcgaagacct agatgtggtt cggcagaagc      1380
     tcgaggacat ccaagaaatt ctcgagagca gcgaagaatc gagcgaaggc gtgaacttaa      1440
     acgcacaggt acgttctaaa ttcgagcggc aatattttaa aataaaggct ggtctgttgt      1500
     cgaaactgcc tcaatccaat tcttctggcg atgcttccaa tccactcccc cctacggttt      1560
     cctccagtct gaagggtctt aagcttccaa caatcacttt gccagaattc aacggtgatt      1620
     atagagagtg gttggctttt cacgacacgt ttttggcgct tatccattcg aaccaagatg      1680
     tcccagaaat tcaaaaattc cactacctta agtcgtcggt ttctggcgaa gctgctcaaa      1740
     tcatcgaatc gtttgcaatc agtgctgcca attatcaact ggcctggcaa gccttgatca      1800
     gcagatatgc caacgaatat ctcctgaaga agcggcatct gcaggcgatg ctggaaattc      1860
     aacgagtaaa gaaggagacg acagcttcgt tgcatggaat cgttgacgat ttcgagcgac      1920
     ataccaaaat cctacggcag ctcaatgagc cagtggatgc atggagcacg atattagaac      1980
     acttattatg cgttcggctt ccggatgata ctctcaaggc ctgggaggac catgcatcta      2040
     cgactaatga tgcatcctac aaagcactta tagagttcct gcatcgtcga attcgagtgc      2100
     tagaatccgt ttccgtaaat catgcgcagc ccgctattca gtgcgttacg tcttctcatg      2160
     cttcgacaac tcggaaatct ccccagatca aacaaccatc caatatggca cccgataact      2220
     ttcccagcaa atgctatgct tgtgatcagc gtcatccatt ggtaaaatgc ataaaatttg      2280
     agaagatgaa cgcctccaat cgactggcat tagtcaactc caatcggtta tgtttgaact      2340
     gtttcagagc ggatcatttc tcgaggaact gttcatccaa atatacatgc aagttctgca      2400
     aaaggcgcca ccattccctc ctccatgacg gatttggaga cagttcagtg aatccttcct      2460
     ccgattttac ttctcgtgtg tcgacgaatg tgagtctatc atcggtgaat gaggtctctt      2520
     cttccaagct ttcggttatt acgtctcttc agccgacgga ggtcacctgt agtctgcctg      2580
     ttcaagaagt cgagaagaat gtgtttatgc tgacagcggt agtggctatc gtcgatcgtt      2640
     atggtaatga gcacctagcg cgtgcactac tggactcagc atcacagccc aacctcatct      2700
     ctgaaaaaat ggcccagctg ttgcgattga agcgaaacaa aaccaacatc ctcgtccaag      2760
     gcatcggtgc gcaatcccag aacgccaggg aatccgttca tgttgagatc aggtccagaa      2820
     aggagaactt ttcagtcagc gcagagtttt tgatactccc gaaggttact cctgatctac      2880
     cagcctatga tgtacctgtg gatcactgga aacttcctcc taacatcttc cttgcagatc      2940
     cccaatttca caagcgtgcg ccaatagaca tgatctttgg taatgagcat ttcttttcgt      3000
     tctttcaaac ggcaaaccga atcaatttac ccaagtctgc accaacgctg gttgacagtg      3060
     tttttggatg gctggtttcg ggatcaacgg gcagaaaccc ttctaccggt cagaataagt      3120
     cgcactccat cgttgcggtt tcatttttca acttggaaga aagcgttgaa cgattctgga      3180
     aagttgaaga gctacagaca cgatccgact actccattga agaaaagcaa tgcgaggaat      3240
     tattctctac taccacgtcg agagatgcag atggacgtta cattgtacga ctgccccgca      3300
     gttctaattt cgaggaactc attgggcact ccaagtccag tgcacttcat cgcttccagc      3360
     ttctagaacg aaggctcgac cgcgatccca aactgaaaga agagtatcag aaatttatgg      3420
     ccgaatatct ttcccttgga catatgcagc gtgtcgaaga ggaaaatcat caccaatcca      3480
     cagcatacta tctcccgcat cacccggtga taaaagaagc tagcacaacg acgaaggtac      3540
     gggtcgtatt cgatgcgtca gctaaaacat cgacaggttt ctccttaaac gaagcgctac      3600
     tggtcggtcc tgtggtgcag gacgatctat tgtcaatcat tcttcggttt cgcacatttc      3660
     cagtagcgtt ggtgggtgat attgccaaaa tgtaccggca agttttactg catcctcacg      3720
     atacttcttg ccaaagaaat tttggagatt tgatccggct gatccaatcg aaagctacga      3780
     attgttaacc gtgacgtatg ggttgagtcc ttcttccttt ctagccactc gaactctcca      3840
     gcagttatca gatgacgagg gtgaagcata cccgctgggt agaccggctc tccggaaggg      3900
     gttctacgtg gatgatttca tcggtggtgc gcaaacaatt gaagaagcaa tacaattaag      3960
     gcaggaatta ggcgagcttt tgatgaaggg cggcttccca cttcggaaat ggacatccaa      4020
     ccaactaccg gtgcttgcgg gactatcacc ggacgagatc ggaacgcagt catcgataaa      4080
     gtttgatcga aatgaaacga ttaagacatt gggtatatca tgggagcccg agtccgataa      4140
     cctccgtttc gactccaaaa tacaccatca tgaaggagcg gctacgaaaa ggtccatcct      4200
     gtctggaatt tcgcaacttt tcgatccatt gggtttaatt tcgccgattg ttatcagagg      4260
     aaagctgttg atgcagcaat tgtggctcct tccatgtaaa tgggatgatc cagttcccgc      4320
     cgccatcgca aaatgttgga aggaattcgt catccagatt cccaaagtca ccaactttcg      4380
     tgtcagaaga tatgctctac tgcctaactc gatcatacaa cttcacacgt tctctgatgc      4440
     ctctgaagta gcgtacggag cttgtacata cgccagatgc gtggatccgt caggagaaat      4500
     tcggattcag cttctcgcat ccaaatcccg agtcgcaccg ttgaaaaagg ttactctgcc      4560
     gcgtctggaa ctctgtgcgg ccgacatagc agctaaactc catgctcgga tcaaagaagc      4620
     actgcaaatt tccatcgcca gttcctattt ttggtccgat tccaccgtta cgctacaatg      4680
     gctgcgggcg cctccaagta cttggaaaac tttcgtggca aacagggtat cggaaatcca      4740
     gggcctaacg cacggtgcgt tctggaacca tgttcctagt caggaaaatc cagcggattt      4800
     gatatcccgt ggcatgcagg tcgacgactt cctagccagt aacttgtgga agcaaggtcc      4860
     tgtgtggttg tcgcatgctg aggatcgatg gcctgctacg acgctttcac tgtatccaga      4920
     aaatgggaga gaacgacgaa aattgatcac tgcagtcacg cgaacgcatg ctgaatctat      4980
     agtcaatcca atatttgcca gattctcttc ttatgatcgc ctacgtcgaa ctactgccta      5040
     cattctccta ttcatcgcca atgttcgttg taaagctcgc acgcaaccac ttccgtctct      5100
     tagtccgctg ccaagtgttt cactctccgt gaatcatctg cgtgccgccg aacgagcttt      5160
     aatacagtta gctcaagctg atgcatttcg tgaggagctt cgggatttac aagtcaacaa      5220
     gaccgttgga aagcactctt caactcgttt gctttctcca tttctcgacc ctgagggaat      5280
     cattagggta ggggggagac tacgactttc agaccagcct ttcctatcca aacatcccgc      5340
     tcttctgcca agcaaccacc ctttgtcccg cttgattgcc aaattttacc acacctcgct      5400
     tgttcatggt ggtggccacc tgactcttgc ggtaatgcgc gagaaatttt ggccaattca      5460
     cggacgacga ttagtccgta gtattctccg cagctgctat cgatgcgccc gagccaatcc      5520
     tgtcccaacg agccaacaaa ttggacagct accactccac cgaatcaagc caagccgacc      5580
     gtttgccgtc tctgggatgg actacgcagg accggtatac ctgaaaccgg cgcataaacg      5640
     agcggctgcc atgaaggcgt acatttgcat ttttgtttgc ttctgcacca aagcggtgca      5700
     tattgagctg gtgagtgacc tatcgaccca agcgtttctg tcagctcttc gtcggttcat      5760
     cgcgcgtcgg ggatgcccga ccgatcttta ttccgataat ggaaaaaact tccaaggtgc      5820
     cgccaacgaa ctagacgaat tgtacaggtt gctacaagac gagaagcaga tgaaccaaat      5880
     tatggctgac cgcatctttg agcagattac ttggcacttc aggccgccaa aggccccgca      5940
     cttcggagga atctgggaag ctgcggtgaa ggtggccaag actcagctat atcgtcaact      6000
     gggagcgtcc aagctgtctt tcgaagacat gtcgactgtt ttggcgcaga ttgaagcgag      6060
     catgaactcg cgcccgatcg tgccgttaag cgaagatcca aacgatatca ccgcactcac      6120
     gccggcacac ttccttatcg gtgatactat gcacacgttg ccggaagcag acctacaccg      6180
     gatccctatg aaccgtctag tagaccacta ccagaaactc caagcaatct accagcagtt      6240
     ttggcatcac tggaggaaag agtatttgca ggagttgcaa cgagacacca agacctgcca      6300
     tccaaatacg gacattcaac ctggtagact cgtagttctg atggatgagc atcaaatgcc      6360
     agtaaaatgg ccgcttgcgc ggatcgttgc tgtgcaccca ggtaaagaca agctagtgag      6420
     agttgtgtct ctgcgcacca gtcggggtgt aatcatacga cccgtaacta agatttgttt      6480
     gctaccctta gagaagacta atgagttatc agaacaggga acatttatca atggttcaga      6540
     agagaattaa ttaagttatc gagctatatg taacttctta gtttgtaagg tcatttattt      6600
     tctttgaatt cagaatcaaa tgttgaaaaa cttattttca agatggcggc ga              6652
//
ID   BEL-911_AA-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-911_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-359
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-359
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4566-4566 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 359 BP; 104 A; 74 C; 67 G; 114 T; 0 other;
     tgttgtaaat tgaacattct atttttcgcg atcatcatag gtttcgacca atccagccga        60
     accccattgc atttggccag ggccacagat acacatatcc cctatcaatg tagttgattg       120
     cctctgttct tctgctactc gctggatcat tcagttcagt taattttatc cattcggccg       180
     ggcaagatcg cagttttgta gttcggaacc tttgaacctg tggaagaaaa ataaatagtt       240
     ataaatagag aaaatcaaaa ttgtttaaaa taaagtgcaa gttagtgctc gcgagtaaat       300
     tgcattttac ttacccttac cctgattcga atacggcatt ccgtgtgttg gataaaaca        359
//
ID   BEL-912_AA-I repbase;    DNA;    INV; 5792 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-912_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5792
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5792
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5792 BP; 1600 A; 1382 C; 1447 G; 1363 T; 0 other;
     ttctttaaga tttttgttgt ggttatggaa ggtaagatgg tagatcgcac tccctccccg        60
     cgatctcata ctcctcgtaa ttgccaatca tgcgaccgcc ccgatcatgc cgaggaagag       120
     atggtccagt gcagcatatg taagctctgg gaacacttcg gatgtgccgg cgtagatgag       180
     caggtgagac agcacgacga aaatctgatt ccccaacttc cgatggatgg gacacgtctg       240
     tcgaaaggat cgaaagcagc gtcaagggca ggatcaaaga gggggaaaaa ggtacccgac       300
     ccaccgaaaa gtactacctc cagtatgcgt gtggctctct tagaagagca gttgaagcta       360
     gtcgaagaag ggctacggtt gaaagaacag gagcttcttg aacaggatga gatgaagcag       420
     cggcaactga aagaagaaga acgtcaacta gaagaaaaaa gaaaactcgc ggaagaggag       480
     cgtaatatac gtgagcgaaa gcttcaggac gagttggcgt tgaaaagaaa acagcagcag       540
     atacgaagag agtccttgga aaagcggcag caaatcatcc ggcagcaagc agaaatgagc       600
     agaggtggtt caattccaga tgttggccag agagtgggag attggctaga ttctcaagcg       660
     agaactgaag ggtcggaagg tattccagac aaggcatgcg atgacaatca atccgtcgac       720
     tcaaacctcg gagtcgtttc taatataccg gcagtgatcc atccgaacgc cacggaactt       780
     atggacacac caaagctaaa acgagctcaa aatattgatt ctcgaactca agacgtttct       840
     ccattcaacc atcatctcac acaagtgcag attgcagcac gacacgtgct ggggaaagat       900
     ctgccgacat tcagcggaaa cccagaggag tggccagttt tcattagcaa tttcgagcaa       960
     tcaacggcca catgcgggta ttcggatgcg gaaaatctag tacgcctcca acggtgcttg      1020
     aagggccaag cattggaatc ggtaagaagc cgcctgcttc ttcccgcaag tgtaccccac      1080
     gttattaaga cgcttcgcac gctctacgga agaccggagc tcattattcg atcgttgatg      1140
     aataaaatcc atcaggttcc ggcccccaag cacgaccggt tggaaacatt gattcatttc      1200
     ggcctctccg tacaaaacct agtggaccac cttaaggcag caagtcagca caaccatttg      1260
     tcgaatccag ctttaatgca ggagctggta gaaaaactac caggatcgat gcgactagac      1320
     tgggccattt acaaaaataa gaatcaacca gcaactctcg aatcctttgg agaattcatg      1380
     tctggactcg tagacgctgc aagcgaggta tcttttgagt ttcctgaatt gactatatca      1440
     cagaggatcg aaaaacggaa aactagtggt tttggcgtag ttcatacgca ctccgaggaa      1500
     caaccggccc ctgtggcggt cgggacttcg ctcaatacaa aggcgggtaa accctgtatg      1560
     gcatgtggtc gcgttggtca tcgagtggca gaatgccatc agtttaaagg cgcgaacatg      1620
     gatgagcgct gggaattagt tcaccaaaag ggattgtgcc gcacatgtct caataaccac      1680
     ggaaaatggc catgtcgatc gtggaacggc tgtggaatcg atggctgtcg tcagagacat      1740
     catacactcc tgcatacttc aaacaattcc ccagaaaacg tcggcgtttc agctagccat      1800
     gtatctgccg gtggtctcaa gtggccactc tttcgcatcg tgcccgtcgt cctttcaagt      1860
     agcaacaact ttcaaactat ttttgccttc atcgatgagg gttcgtcgta caccctgttg      1920
     gaagaatctg tggcatcgca actaggagtt gttggacagc cggaaccact tacactccag      1980
     tggaccggta acgtcaagcg agtcgaatcg aaatctcaac gtgtacaggt taacattgct      2040
     ggcaaggact gtgacactca atataaactg gttgacgccc gtaccgttag tcggctggta      2100
     ctgccgtcac aaaccctgca gtatggagtt ctggcacaac gcttccctca tctacgtggt      2160
     cttccactac aagactacga actagttcaa cccaaacttc tgatagggct cgataacctg      2220
     aaattgtgcg ttccactgaa gctgcgggaa ggaaggccat cagaaccgat aggcgcaaaa      2280
     tgtcgactgg gatggagcat ttacggatgc attcctggtc aatcgtccca gaaggcgatc      2340
     gtcaatctac acgtagctgc agtttgtgac cctgatcgag agctgaacga acagttgcgt      2400
     gattttttca ccctagagtg tgctggaatt tcgggcttac gcgaggctcc tgaatccagt      2460
     gacgaaaagc gtgctagaga gctgctgacc agcacaacac gacgtgtttc acatggaccc      2520
     ggttatgaaa caggacttct ttggaaaaac gacaaccccc tgtttcctga cagctaccca      2580
     atggctttgc gtcgtctcga agggctggag cgaaggctgg aaagagaacc ggacttgaaa      2640
     gagagagttc atgagcagat tttggaatat gaacgtaagg gatacgcaca caaggccaac      2700
     ttggctgaat tgacgtccgt caatgtcgat cgggtatggt accttcccct cggcgttgtt      2760
     atcaatcctc gaaagcctgg aaaaatacga ttgatctggg acgcagcagc caaggtggga      2820
     aacacttcgt aaaattcaag gttgttgaaa ggacccgatc ttctctctcc acttccaaga      2880
     gttctctaca agttccgtca atatccggtg gccgtctgtg gagatataat ggagatgttt      2940
     caccagattc gaattcgagc tccagattgc cagtcgcaac ggtttctctt tcgcgagcgc      3000
     tcatcggatc cgccacaagt gtacgtaatg gatgttgcga cattcggctc tactagctct      3060
     cctgcatcgg cacagttcat caaaaatctc aacgccaacg agtttgcaag cgagtatccg      3120
     cgagctgctg tagctatcaa gtatcaccac tacgtagacg actatttaga tagtttcgag      3180
     tcggttaccg aggctgttac agtggtgaac gaagtcaaac tggttcactc taagggtggc      3240
     tttactctgc gacgtttcct agccaatgaa gtggaggttc tgcaaaaaat tggagaatat      3300
     agtgaacaag cttccaaaac ccttgatctg gagcgtggag gaaaatcaga atcggtacta      3360
     ggtatgaagt ggatgccatt tgaggatctg ttcatgtatg cctttggatt cagagacgat      3420
     ctccaataca tcctgaacga aggacacatt cccaccaagc gagagattgc acgggtgatc      3480
     atgagcttct ttgatccact cggctttatt gcctttttcc tcgtgcatgg caaagctatc      3540
     ctataagaca tttgggtaaa gggaactgaa tgggaccaaa agataccggt agacttaaac      3600
     gaaagatggc gacaatggtc tggccttttc catcaactga accaactttt cataccaaga      3660
     tgttacttcc ggtctccatt ccctaagaac ctcgacacac ttcagcttca tctattcgtc      3720
     gatgccagcg aagcagcata tgccggcgta gtttatttcc gtttggaatc agaggagggc      3780
     gtacaggtgt ctcttgtagg agcgaaggtc aaggtagccc cccttaagac actttcaatt      3840
     ccaagactgg agttgaaagc agctgttctt ggaattcgtc tgcaggaagc tatccatagt      3900
     caacacacct tcccgataag tcgtcgtttc tgttggagtg actctggaac cggatggatt      3960
     cgttctcaag atcacaggcg atatcacaaa ttcgttgccg ttcgtgtggg cgaaattcta      4020
     tcttcaacag aaccaagcga gtggaggtgg attccatcca agctaaacgt cgcagacctg      4080
     gcgacgaagt ggggcaacgg tcctcagctt aatatggata gcacgtggtt tcaagggccg      4140
     agcttcctac gtggatccga ggagaattgg ccaaaacagc aaaagatcga ttcaacagaa      4200
     gtagagttga gacccgttcg atgtcacttc tcacacttta ctcctattct ggacttcact      4260
     cgattcaaca gctggattaa aatacatcgt gtaaccgcct atgtgttacg ttttgtagaa      4320
     aacatgctac gaaagaaaaa gggtgaacag ttagagcttg gtatcctcac tagcaatgaa      4380
     cttcggtgcg ccgaagaagt gctgtggaaa agtgctcagg gtgaagcgtt tccagacgaa      4440
     gtggctgttc ttaccaaatc taaggggcca cctgaacaac gtcacagcgt cgtacataag      4500
     tccagtgcta tctacacaaa gtggcctttc ctcgatgaaa gaggagttct acgaagtcgc      4560
     ggcagaatcg gtgctgcacc tcacgcaccg gccgaagcta agttccctgt tattcttcca      4620
     aaggatcatt taatcacctt ttatattgta gactggttcc atcgccgtta ccaccacgcc      4680
     aacagagaga ccatcttcaa cgaaattcgc caacggtttg acataccaac gctaagacga      4740
     cttttggaca aagtagctaa caaatgtgct ttttgccgta ttacaaaggc tttaccaaaa      4800
     ccacccgcta tggctccgct cccggaaatg cgcttaaaag ctttcattcg tccatttaca      4860
     tttactggtt tggactactt cgggccagta cttgttaagg ttggtagaag ccatgtcaag      4920
     cgatgggtgg ccctctttac ctgcctcacc atcagggcta tccatttgga ggtagtacat      4980
     tcgctgagca cagaatcgtg cattatggcc gtacagcgat ttgtatcccg gcgtggtgtt      5040
     cccacggagt tttggaccga taatgcaaca acctttcaag gtaccaataa tgaaatgaaa      5100
     gcaacaaatc aagcactatc tcaaaaattc accaccgcac aaacagcgtg gaagttcatt      5160
     ccacctgcat cgcctcacat gggtggagct tgggagcggc tcgtccgttc agtcaaacag      5220
     acaatcagta ctgtattgga cgaatcccga aaaccgaacg atgagaccct agaaacggtc      5280
     ttattagagg ctgaggccat ggtaaattca aggcctctta cgtacattcc gctaaagtcg      5340
     gcaaacgaag aagcccttac gccaaaccac tttttgctgg gcaactcgtc cggtacgaaa      5400
     ttccttccta cgggaccgat agacaactca tcaaccttaa gaagtagctg gaagctggcc      5460
     agattcatca ccgacgagtt ttggcgtagg tggataaagg aatatctccc ggttatcacc      5520
     cgtaggtgta aatggtttca agcgacgaag gacctcgaag ttggagattt ggtcttgatt      5580
     gttggcggtg cggctaggaa ccagtggata agaggacgta tcgaagaagt gtttcctgga      5640
     acagatggcc gaattcgcca ggcattggtt cgaacttcga tggggatcct gcgaagacca      5700
     gccgtgaaac tggctgtttt ggacgtcgac gagaagtgta aacctggtcc ccctgctcca      5760
     gagcctgacc aaggtttacg ggcgggggta tg                                    5792
//
ID   BEL-912_AA-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-912_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-491
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-491
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4567-4567 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 491 BP; 150 A; 100 C; 93 G; 148 T; 0 other;
     tgtgccgacg ggacccctcg tcgcagcaac gctgtcgatc gcagcgcacc gttcatcgac        60
     tcatctactg acagtgacgt tctgtgagga atgtcatgct gatcgggttg tcactgaatg       120
     ataatgaaaa ctactttgtc atcctgatcg aagagtgcac agattattga attcttgatt       180
     tccaatcctt attactaaaa gctgaattgt ttaaacatag tttgttgctt aatagtaagt       240
     agtacggctt aatcgttgat ttgtagaaaa tctataaagt ttactctcta ggcacagcaa       300
     atctcagcgt gaaatctccg cgacccacac cttccaaatt taatcgatta accaaaaatg       360
     taagtcaatt tgaaaccgta acaatgaatt gtagcaagta tagtaaataa atatttcttt       420
     ttagcttaaa gctaacgtca gcaaattctg cgtctgctat taggagttgg tagtccgaag       480
     ttaacccaac a                                                            491
//
ID   BEL-913_AA-I repbase;    DNA;    INV; 5441 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-913_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5441
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5441
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >97% similar to each other.
XX
SQ   Sequence 5441 BP; 1439 A; 1341 C; 1430 G; 1231 T; 0 other;
     tttttggtcc ttcggtcgcg gataattact gaatcggcgc gataaaaaac gtaataaaac        60
     gacgagatac tttgttcgcg aagttgcagt gggaatacga gatcgcaaaa acgattcgcc       120
     aacgccagcc ccaccaaccg gaggtgacgg agcggctgga cagattgctg gagacgcggg       180
     ctgcgttcga ggacgtgcaa acggaaattg agcttgctgc ggacacgttg gaaccgatgg       240
     cggccatttt caatcaccgg acggagtttg ataacatcta ctacgcagta aaaacaatct       300
     acgtcacata tttggatgcg atgtgtgatc aaggtcacgc tagtgacgac acggttgcca       360
     gtttgcccga cgacttccga caagcaatca aatcgctggt ggagacacag gaacgtttcc       420
     tgagagcgca aactgccgtg tcaacaaaca tcggagaact agctgcccaa caacatcgtg       480
     ctcaagcgga aagttcgtca gcaggaactg cgcatcccaa cgtcaacctt cgtctgccgg       540
     ttttcgccat tccggtcttt cgtggagaca ggaaggagtg gagaacattc aaggatttgt       600
     tcgaaactgg catccacaat cgcgaggaca ttagcgacgt gctgaagctg cagtatttgc       660
     tgagttatct cgacggagaa gcaaaaagcc tcgtcagtgc ttttcctatt tctgacgcaa       720
     attacgaacc ggcgtggacg aaactcaacg atcactacga taagaagaag tacatcgtat       780
     actccctcat tcgtgaattc tgcgatcagc cagccgtggc caaccccgtg acaggactgc       840
     ataaactgct ggctacttcg gacgacatcg ttagacaact gtctgcattg ggcgacgaat       900
     aggaggcacg cgatccttgg ctaattcacc ttgttctgga gaagctagat aaggaatccc       960
     gttcgttgtg ggcgcaacat gttatcggcg acgacaatcc caccttcgaa gtgttcttga      1020
     agttcctgca ggaccgatgt gatgcactgg agacgttttc tgcattcacc aagaagccag      1080
     gcggacccga cggagcgaag aaagacacca agaaggaacc cgcaaggaca acgatggcga      1140
     aggagagaat gttccagagc ttccaagcta gtgcccagca atgccctgtg tgtggagtta      1200
     aggatcactc aatctacaag tgcgagtcgt tccgaggcat ggacgtctcc ggtcggcggg      1260
     aattcgtgtc gaagtcacga ctatgtttca actgtttgaa aggagtacat gcagctcgta      1320
     actgtccgtc tacgaatgta tgcaaaaacg ccaattgcaa acagcgacat cacacgttac      1380
     tgtgtcaaac taaacagaag aaacagacaa gcacagggag cacttctacg gtgaagcctg      1440
     ctcaagccac acaggcaccg gaaagcagca ccaatgaggt ggtggcctgc tcaggaggac      1500
     tgatggaaaa ctccaagcga ttttcagtca gttcaatcac tattctacca acggcattgg      1560
     tgaagatcag aggcaaacac ggattgctcc acgaggctcg agttctgatc gactctggat      1620
     cgctggtgtc tttgatcaca caggactttg cagcgaaatt gggaattcct cggaaaaatg      1680
     cgagactggt cgtttctggt ctctcgcagt tggcagcagg aacgacaaag ggggtcgttc      1740
     acctgttcat ctcatcgagg ttcagcgact cggtggtgct atccactgac gcttacatcc      1800
     ttggacggcg gacagcgcct ctgccgcgct tggagctgga tcaggctcag ctcaggaatt      1860
     tggacaaact ggaccttgct gatccgcttt actacaaagc agctactatc gatgtcatcc      1920
     taggagctga cgtgttcctg tcggtgatac gtgatggaca atgcagggat gagtcgaatc      1980
     ggcccgtggc ccagaattcg gctttcggct ggatcatttc cggcaagctc atcgacgacg      2040
     tgaacagcga taccgcattg agtttttgca gtgagatcga catcgacaag acccttagga      2100
     tgttttggga gtccgaagaa cttcaaaagg cgaaatcatt cactcccgaa gagcagctgg      2160
     tgatggagca cttcgagaaa actcataagc gagacgagag cggccgtttc atcgtacggt      2220
     tgcccttcaa cgacaataag cacgagatcg gcgaatcctg ctcggcagtg cgatgtcttc      2280
     gtaccatgga acggagattc caagctgagc caggatttgc ggaactctac aaaggattca      2340
     tggaggaata tgccaacctt ggccatatgg agcgcatccc taggtcggaa gtagatgtgg      2400
     gaaataattg ctattatctt ccccatcacg cagttatcaa ggaggaaagt ctcacgacta      2460
     aactgcgagt tgtttttgac ggctcgtgcc tatcgtcaac gggcatagct ctcaatcaaa      2520
     cactccacgt tggacccaac ataaatccag atttgttggt cgtcctttcc cgcttccgaa      2580
     cctactcggt agttttcgtc gccgatgtga cgaaaatgta taggcaggtg ttagtcgacc      2640
     gtcgcgaagt cgactacaag agaatcgttt ggcgcaccaa caccaacgat ccaatcgaac      2700
     actaccgtct tctcaccgtg acatacggta caggatgtgc ggtcttcctg gcaatcgaag      2760
     ctcttgtgca tgcagcgaag cagtactcca acatctatcc cgacgcagct gaacgtgtca      2820
     tcaacgacag atacgtggac gatctgatgt ctggagctga ttcccttgat gcagcgaaca      2880
     cgctaaggaa gcaaatgatc gaaatattgg atgcggcggg attccctctt cgaaagtggg      2940
     ccacgaatct gccagctcta ctcgatgatg ttcgtgaccc tcgaactgaa gcgatccctc      3000
     tacagctgaa cagcgagcga agtgaggtga aggccttggg cgtgcaatgg ctaccagtcg      3060
     aggacgtttt catcttcaaa gtatgcctac cggaaaaagc aggtgtaacc aaacggcagc      3120
     tactttcgga atcgtcaaga ctcttcgacc cctttggatg gatatctccg gccattatca      3180
     aggcaaagat atgttatcaa caaacatggt tgtacgattt gcacttcgat gatcctcttc      3240
     ctgtagcgat attacaagaa tggctggatc tgcgaagcaa cctacatcta ctagaacagg      3300
     tacagattcc aagatggatt ccgaaccaca acgggcgtat tcaactgcta ggcttctccg      3360
     acgcttcgga aacggcctat gctgcggtgg tttacgcgag gtcaatcgac ggcgaaggga      3420
     aggtgcatgt ccagctcttt gcggcgaaga cgaagctggc acctgtgaag caaacaacac      3480
     ttcctaggtt ggagctcaac gcagctgttc tgctcactga tctgatgcaa aagttaagcc      3540
     tttcgctcga tcatctgcaa gtggagtatc gcgcttggac agactcaaca attgtgctgc      3600
     agtggctttc ttcacttcct cggcgatgga agacgtatgt agcaaacaga gcgtcggcca      3660
     ttcaggagtt ctttcggcgg agtcgatgga actatgtatc aagcaaggag aaccctgctg      3720
     actgtgcgtg gaatgtcacc agctgaatta gtgagtcaca gcttgtggtg gcgaggccca      3780
     ccatggctct gcgaagatga atcaacatgg agcacactga aaccggaacc tgttgcggat      3840
     gaggatctac tcgaggatag aggaaaggaa atggtggcgc ttccatcttc ggttgaatct      3900
     tcaggaacga ccttcgaaat tgaagcagcg attctgcagc gatcgtcaaa gcttaagttg      3960
     gcgttgcgtg tcctagctca agtcaaacga gctgtgaagc agcgtcactc gagacccaag      4020
     ggatttttga ctgtggaaga actacactcg gcagatctcg cgttgattcg actggcacaa      4080
     cgtgacgagt tcaacacggc tgaagcaagg catggaggtt tcgcgaaaga gtaggctcag      4140
     acagctgttt ccatttgtcg acggtgacgg tatcttacgg gttggaggca gacttcaaaa      4200
     ctcctccata ctgtatgaaa tgaagcaccc tatcattttg ccaaagttcc accgttacac      4260
     tcgactgcgg aacagattca cgagaagaat ctgcactgtg gttcgtcacc tctgatcgcc      4320
     actctgaatc aacggttctg gattttgggt tgcagtgcta tcactcgtca agtcgtcaag      4380
     gattgcgtca cctgtgttcg tctaaagggc cagacagctt ctcagctgat gggatggcag      4440
     cgcgaacaac accaacacga gcgttcacac acgtgggtgt ggactatgcc ggccctattc      4500
     tagttcaatc cagtcatcta cgaggttcaa gaactacgaa gagctacatc gcagtgttca      4560
     tctgtttgtc aactaaggcc gtgcaccttg aggcagcagg tgacttgtca acgaactcgt      4620
     tcctgatggc cctcaagcgt tttgtgggaa ggcgaggcct ctgcttaaag atttggtcgg      4680
     acaacggcac taattttatt ggtgccaaca accaactgca agctagtgtc gacttggaag      4740
     ccaacatgga tctcaaggaa ctctataagc tgatacagtc gaggacacac tgtgaagcgg      4800
     tagtccaatt tctggtgaat aagggcatca agtggcaatt catcacccca tcatcgcctc      4860
     acaaaggggg aatctgggaa gcggcggtga aaagtgttaa aaagcacctg cgagctgtca      4920
     tcggtaaaga gccactgatg tttgaagagt tgtcgactat cctagcacag actgaagcat      4980
     gtctaaactc gcggccgctc tgtgctatat caacggatcc agacagcgtg gaaaccctca      5040
     caccggggca tttcttaatt ggccagcctc tcaacctgat cccggaacca ggaatacggc      5100
     accttccagt caatcgtttg gatatgtacc aaaaacttca gcagcgtacc gaagatgttt      5160
     ggcgtcgttg gcaagacgaa tatctggcta ctcttcaatc tcggtacaag tggaccggta      5220
     cacagccgaa tttggaagta ggacaactag tcacggtgaa aaacgagaat ctaccaccgt      5280
     cgcaatggga attggcgaga atctcagcgg ttcatcccga caaggaaggc atagttcgga      5340
     ccgttacact tcgtcgcggg cagacggagt tccagcgctc agtgaacaag atttgtccct      5400
     tgctggataa tggaggcaca gtgcctcaag gggcgggaaa a                          5441
//
ID   BEL-913_AA-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-913_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-213
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-213
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4568-4568 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 213 BP; 57 A; 46 C; 37 G; 73 T; 0 other;
     tgttaatgat tttcattttt taccagcagc gcaccccccc ctggttcacg agctgtcatc        60
     aatcgtaaac aagattagaa gaacacaact ttttttgcgt cgttcaaatt ctttctcttt       120
     ctgtaagaga aacgtagtag atttattaat aaacgagcag tggattatct cggacgtttt       180
     cgcgagtttt cattcgtttt cgatcccgaa aca                                    213
//
ID   BEL-914_AA-I repbase;    DNA;    INV; 7098 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-914_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7098
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7098
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 7098 BP; 2473 A; 1553 C; 1507 G; 1560 T; 5 other;
     tatggtggct ccagagagga ctcgacgaac aattacgcga cgtcaaagaa ggcacatagt        60
     ctctcaagtc tgtcagaaga tcgcgaagta acaacgcaat ctggtcgaaa aagtgtacgc       120
     gctcgcgcag tgttagttca gaatatcggc atccatcaag gaggagtgca tccagagaac       180
     aaaccagcga agctcacatc atggaatacg cttcgaaccc aaatggacac tgcctgttat       240
     gcacggcaga ggattcctcg gacaggacca tggcggaatg ttcgaagtgt aaacactggt       300
     tccattatct catgcgtggg attggaacta aaaccatcaa agaaagaagt ctggaattgc       360
     atcaaatgca atcgcgaggc ttcggaactt aaaaaactaa ggaaggaact ggaggcatta       420
     aaaagtgcac agcaaaaccc agcagcacca gctgcaacat catcattggc ggcaccagat       480
     tcagcgttgg agttaattcg gatgcagttc gaggcccaaa tgcagagtca acgtacacgt       540
     gatgaagctt accagaaggc gttaacggat ttagtgttgc gtctagagac cgggactaaa       600
     ttagaagtcc caccaatacc ggcagctgct gcaactgtaa cgctaccgga cgagattact       660
     aacttgctgc gaagacaagc agcgacaagc ttacctatgt ttcacggatc ctacaaggaa       720
     tggcctaatt tcaaaaggat gtatgacgaa agcaagcagg ctggccatta ttccgatgca       780
     gacaacataa atcgtttggt ttcgcatttg ggaaagaaac caaaatcata tgtgtcagcg       840
     ttactaatgg atccaggaaa tgaaccccag gtagtggaaa cgctgaccag tatttacggc       900
     caaccaacgg ccatatacaa cgaactgtgg ggcgacttaa acaaattgaa gaatcccagg       960
     atggacaacc ctcaaacaat gattgacttc gtagttacac tgggaaattt agtgtgtaat      1020
     atgaagttga taaaccagga ggcatacctg aataatccgc ttcacatatc ggagatcatc      1080
     ggaaaaatgc cattaaacat tcgtgagcaa tgggctgacc aagaagcagc agctgctgtc      1140
     ccggcagctg ggcaagcacc gagaagatta acgttagagg atttatatgt atttatgaaa      1200
     cctcagcaga aacgagcgac cctcctttta gctcaaagac ccaatcaaga tagaatacct      1260
     actgtctcag cacgagtaaa tgtgcaaaaa gagaacaagg aaaaaccttc aaggagttct      1320
     aaggccaaag tgggctgctt tgcatgccgt aaagcagacc ataagacctc cgaatgtgaa      1380
     gtctttagaa aaatgaaaac agatcaaagg attgatctaa taaaaaagga aaggctttgc      1440
     atgggacgtt gcaactattc caaccacatg gccaaggact gcaagattgc caatacatgt      1500
     aacacggacg gatgctccta caaacaccat cccttgttgc atgattaccg caaggaaaag      1560
     tcaaggccag acaaaactga aatcagcgaa aaagaagaga aaaaaaaaca aaacaacacg      1620
     agtcagcaca gaaggaaaca aagctctctg cgaaggaaga aaaatgtaat gaagaagaag      1680
     cccgtaccaa aatgcattcg attcagaaga ccaaaattta tttccaaata cttcccgtga      1740
     caatggaagc aaatggaaag atgctggaaa catatgcctt cctggatcat ggatcttcac      1800
     atagcttgat attgaaagat accgcaaaac acttgaattt gcgtgggcca ctctcacctt      1860
     tcaacatgtt gtggaccaac gaatcagagc actctgatcc agaaagtcag cgagtgtcat      1920
     tcagcattaa gggatcgaac ggcgtcttac attcaatgaa taatgtgaac acgattgaaa      1980
     aactatcatt gccaaaacaa acagtggact atkaagatct taaagaaaga tataaacatc      2040
     ttcgaggact accaatccaa agcttcgaag actcctcatc ggtttggatc accctctact      2100
     attaactccc agcaagcaac gtgtgggaaa ggaaggacct cccgctgtga agacacctct      2160
     tggatggaca atctacggga atttagagcg gatggaggca gaccttgcat tcacaggagt      2220
     gcattttgaa accgactcat tgagggatga aatacaaaag ttcttctcaa cagaagagtt      2280
     tggagtaaaa ccaacgatga tagacgaaaa aagttcggaa gagaaacaag ccatacaaat      2340
     tatgsagaag accctccgca acacaggaaa gcagtacgaa attggtttac tatggaaaaa      2400
     ccctaaagta gtaatgccgt caattgaaag ctataagtta gctttgaagc gattgaacat      2460
     ggtggagaac aagatgcaga aaaatcctaa gtttgctact tggtacaatg ataaaattga      2520
     ggaatatgtc aagaaaggtt acgcaaggaa gctgaatcct gtagagacta ccatgcaaac      2580
     ggaaaaaaca ttctacttac ctcamcttgc agtagaaaac cctaacaaat cacctcgcct      2640
     ggttttcgat gcaaaggcga aagtgcaaga ggtctcactg aattcagaat tgctaactgg      2700
     accggatgag ttaacatccc tcttcggcgt tctaatcaga ttccgagaag gaattakagc      2760
     cgtagcggga gacataagag aaatgttttc tcaggtcaaa atgccacagg atgatcagca      2820
     agccttgcga ttcctttggc gccatgggga ttccacgcaa acgatgggtc attacgttat      2880
     gcaagtaatg atcttcggag ctacctcctc accagcttgc gctcaatacg tcaaaaacag      2940
     aaatgctgaa ctgtacatcg agaagtatcc ccgagccgtc gacgcaacta aacgtatgta      3000
     cgtcgacgat atgttggaca gttataattc gactgaagaa gcaatcgaag tagtaactca      3060
     aatagtcgag ataaatgaca acgcgcactt cgagctaaga aactttatat ccaatgatag      3120
     aagcttatta gaagctctac ccgagagccg astatcccca acatggacag acaacctcaa      3180
     gtcagcatca acactaaaac tggctaggtg ttactcacca ttcataccat ctacaagttc      3240
     tatagaatta catgtattcg tggatgcttc tgaagacgca ttcgctgctg ccgcatatat      3300
     aagagttaag acaagcgaag gatacgacat aagtctgatc gctgccaaga ctagggtagc      3360
     cccgactaga gggatgacag taccgagact tgagcttcaa gctgcagtgc tcggcacaag      3420
     actggcaaac acaatcgaag aggaaactcg aataaaattt gctagtcaag ttatgtggtc      3480
     tgacagtacc actgtacaac ttggattcgc agtgattgta aaagaaataa acaattcgtg      3540
     cagaatagga tcggcgaaat tctcgagtcc acgacagttg ctgagtggag atgggttcct      3600
     accaaactca atcctgcaga tgaagccaca cgagataaaa cgacaacgga ctccatatgg      3660
     ttcaccagtg cgccattcct gactctggat gaagagaatt ggcccaagca aaaggcattc      3720
     acatcaagca ccacggagga attaaaagtg tgcaaaatag aagaaataca agacctacaa      3780
     ttacactaca attggtgctc ggattggcag aggctgaaaa aatccgtggg ctattggata      3840
     ttttatatcc ggaagctcaa aagcaaggtg cacaaaagac cgttcaaaat tttcgtaaca      3900
     gtgaatgatt acaggacggc ggagaagatg ataatcaaac aagtacaagc tgaatcttat      3960
     ccagaagaat tattatcgtt ggaaaataac aaagtggtgg agaagcagag ctcaatagcg      4020
     gatctaaacc caaagatgga cttagatgga atcatgagag ctacagggag attagatatg      4080
     gcacattcga tgtcttactc tgccagaaat cctataatcc ttcaaacaag cactatgtga      4140
     ctgatctaat aataaaagat tatcacgcga gatatcttca ccaacaaatg gaagctgtaa      4200
     taactggaat taggcaacaa ttttggatag taagcacccg cagtgcggtg aaaagagcta      4260
     ttgccagatg tcagtggtgt aagaatcata aagctgcccc acaaaaccct caaatgggac      4320
     ttctacctag ttgccgtaca acgccaacag gtaaagcgtt ttcgcatacg ggaatagact      4380
     acttcggacc cctggaaatc acggttcgtc gtgtaactga aaatagatgg ggtgctcttt      4440
     tcacttgcat ggccaccaga gctgtacacc ttgaattggc tgtagactta tcatccgatg      4500
     cattgatcag atgcatcttg agccttcaat acagaagagg tcgaatatat gcactgtaca      4560
     gcgacaatgg cacaaacatg aaaggcgctt ctaatatatt caagcagttg gaacagagac      4620
     tagcacataa aggaatagaa tggcatttca ttcctccctc tgcaccacat ttcggaggag      4680
     tctgggaaag aatggtgcaa gaagtaaaaa agctcttaaa agttaaactt tggggcacat      4740
     cgagacctac ggagaacgaa ctgaagctag cattggcgga aatcgagtac atcttgaata      4800
     gtcgtcctct gactcacatt cccctggaag ttaaagatga tgacccttta actccaaacc      4860
     atttcctgat tggtgagtcg caaacaccat acccatcatt gaacgatatc ggaaaagcag      4920
     aagctacaag atctcaatgg aagaaggtgc aactagctac aaaacatttt tgggatcgtt      4980
     ggaccacaga gtatctgcct aagctgatga agcgcgagaa atggaagcaa cccactagcc      5040
     ctctgcaaat cgaagatgtt gtggtatttc ctgacgagca acttaaaggg aaattccata      5100
     aaggtattat aaccgacgta cataaggctt ctgacggaca agtacgttca gcaaaagtta      5160
     gggttggtca aaatgaatat gaaagaccag ctgtcaaatt atcaaaactg gacgtacgcc      5220
     cttctccgga gatcgttttc actggacacg tcagaagaaa aattgaatct aattttgacg      5280
     actgggcaaa aaggcagaaa atagatatgg acaaagtgaa agagctggca aatcggatac      5340
     cgaaggcaaa accaaaaaag cccattaaaa aggcaaaaca gcatatgttt gcaaaattct      5400
     tgactaccgc ggcggtatta tcaacgctgc agccagctaa ctccatatcc ataactcccg      5460
     tagacgatat tggtataatg tttgatcaca ttggatcata catgtggaag cgcggcgtat      5520
     ggaccaccca catcaatacc tcaatttcac ctacgaaaga tatttcaatg attaaccaca      5580
     tccatgaaaa tatacttcga gctcttacta gaatgggtag aactgttcga gacgaaaccc      5640
     tcaaagaaat gacaacatcg atggaacagc agtcatcggc agcaatccgg aaaatcacat      5700
     cattcaatag gaaccgaaga agcaaaggaa tttttggatt tcttaaagac atcctcttcg      5760
     gtggcgataa ccttgaggag gaaatcgacg caatcaaaac acatcaggat ctacaattgc      5820
     atcaagtgtc agaggccatg acaaaaattc attcaaaagc taaactgtta gaggaccaca      5880
     tcgacaacaa acttcaaaac atcgaaggga gtctgcgacg tttgaataac aagtacacgg      5940
     taagggaggc agaagacgca agacggcgtt tgactgaatc agttatcctg gctaatcagt      6000
     tcctagccag cacaatctac aaatacgacg caattaaatc gtatccactg acgtcaacag      6060
     aaaccaatca gctcataagt gagattaaca aaaaccttcc gtacggctat caaatcttga      6120
     atgatccaaa ggcgattctt ttcaattgga aggagcacaa tgacattatg tacatcacca      6180
     tagacatggt cattgtaagc acagaaatct acgaagcatt caaagtcata cctatccctt      6240
     caccagttaa ccgatcgatc atctacaaca cacaaccgta catagcaatg agccatgcaa      6300
     aacgattctt ctacccttca gtggctggtg aacgatttaa ctctactcat cttatctcgg      6360
     atcaacacac aatccacacg gaactggatt gtatcgcagc agcattggtc aaaggaactg      6420
     caaaaaacca ctgcaaactt cagcaattac cgtatgacta tttggaagtt attccactgg      6480
     cagcagcaaa ccaattcgtc tactacacac ataacccaaa cagtataaga atacattgcg      6540
     acaacacgat aactccctca tactattcgg cagttgtcaa acttaccccg aattgtgaaa      6600
     tacgatccag aaccggaata accacggcct acattcaagc agaaatcaat aaaagcaaca      6660
     cataccttcg gacagcagac agcattccac atatccagtg ggacgaaatc aaagagcagc      6720
     ctaagttcaa ctactccgaa gtatttacca aaaacaactc caaccaacac agtggtctga      6780
     ccgttctggc gatagctacc acatcgttaa cggttatggg cctaatcact gcctgttact      6840
     ttatcggacg taaccctgaa gaatctccaa gtaacccaaa ggacattcca ctagcgacaa      6900
     cccctagaag aagcataaga cgcccacgcc cgaggcgctt cgatatggca acagtcagca      6960
     cggaaaatat tgtgtaaatt tcaaattaaa ttaaaaaact ttacacgata aaaatcatta      7020
     taaaaaatct gtttctagta caactgattg ttaacaacaa actcgtaatt ctatcaggca      7080
     gaattacggg ggccggga                                                    7098
//
ID   BEL-914_AA-LTR repbase;    DNA;    INV; 899 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.08, Created)
DT   24-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-914_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-899
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-899
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4569-4569 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 899 BP; 267 A; 185 C; 198 G; 249 T; 0 other;
     tgtcggcgcc ggactctaat atgatcagct gtaaagacac atttaattca tccacggcaa        60
     cgaccgtatc cattgcaatc agatacgggc gcatattcca aattaattca aatcaaataa       120
     gccacgcggt agatcgcgta gaaagtacac cacacaggtc cgtgcataag acgatcatat       180
     taccggccag ctgacggacc gtccgcgggc aacgttcttg gttgcaaata ttacacaagc       240
     gactcatcgc ataggacagt atgtcagttg tgctaggatc agcagttaat tcgggttcga       300
     aaattgaccc attcaagctc agtagtagat accgtagcat tacgaatagt ttgaatataa       360
     agtcccggtt atgaaagggg cactaaagaa actcaccctt tgtattcccg tgtatcagtg       420
     agcaaagtga aggatgctat atattttggc attggaaatc aaagggtgat cgatatgctt       480
     gttaatcaat tttatgctat ttaaggaaaa actgattgta aatatagtta gtatttgttc       540
     atcagtcgtc gagtcctcat taatccgaaa aggttatcct caccgatgaa gtttcagcgt       600
     tgttaaaatc cgcctcgtgc tcttctgcaa agtttctttg atttacttgt actgcaggtg       660
     gatcacagag agcttttgag ctttggactt agaattggct tgtactgcag gacgattcta       720
     accaaagcga actccccttg caagaagttt actgaattga agtcctcgta actcgggagt       780
     ttcaaagaat aaacttctgg tttaatcttt ggtggtctgt actgcagaac gtcaaagaaa       840
     atccggcaag ccaaaccaac gtgacgtcgt aagatcgtgg acgagttgcg tcaacgata        899
//
ID   BEL-915_AA-I repbase;    DNA;    INV; 5979 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-915_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5979
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5979
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5979 BP; 1693 A; 1402 C; 1306 G; 1578 T; 0 other;
     tttggtcctt cgagccggat tcgaggacac cctgtcggaa ggtcattaaa gttgtgccga        60
     agtttaagtt caattcaatc agtggcacaa aagacgagac cctttgtaaa gctttcgcgc       120
     acgaagcatc catcttcctg tgaaataaaa gatgtcgata ttttcctccg gcgcgaacga       180
     ttattgattt ggtggcacca accattttac tcgcaatcca tattgccagt tccccaatcc       240
     ctacttactt gcgtacctct ggcaccattc agaaatttaa agatcgttgt gtgcgggact       300
     tagagagagc ataaattaga ctggttcaat tgtgcatgac tgtcactgtg gtgatgaatt       360
     aagtgatagt gtttggacta agagttgtga tacccattaa ctaacagtga ttgaactacc       420
     agtgcgcagt ggaacaaaac agtgaaaatg ccgtcggata agaaatccga gaagaaggtc       480
     gtagatctaa tagtgagcag aaagggtttg ctagttttgc gtgattcagt ggaaaatttt       540
     gtgcaccagt atgatgatga acgtgattcc tgccagctac cggttcgttt ggaatgtctt       600
     gaccgaactt acaataactt catggaaatt caatcggaaa tcgagcgatt agacataccg       660
     gagatgttag aagaccattt gatagaacga tcggactttg aagcgaggta ttgtgcagcg       720
     aaaggtttca tgttgtcgaa acgaacagtg gaccccaacc aaacgatgaa catttcgttg       780
     atgaacagtc atcacctacc ctctacaagt ttccatctac gtttaccgaa aatcgactta       840
     cccaaatttg atggtgattt ctcacgttgg ctttccttcc gcgacacata ttcttcgatg       900
     gttcactcca acgcagatat cccaactgta gccaaactcc agtatctgct acaatcttta       960
     gaaggtgagg cacggaagcc cttcgaaagt gtggatatcg aagcagacaa ttatgcttct      1020
     gtatggaacg ctttgctgaa gagatatgac aactctaagt tcctcaagaa acagctgttc      1080
     cgtacaatcc atgaactgcc accgctgcaa caagaatctg ctcaacagct acacgaactt      1140
     gttgatgaat ttcaacgtca cgtcaaggcc ttggagaagc tcaaggaacc cattcaacat      1200
     tggaatactc cacttgtata tttgttgtca accaagctag acccagcaac gctaagagcg      1260
     tgggaagaaa aaacgattaa tgatgaccag gtgcaatatg attcattggt tgaattccta      1320
     tataaccgcg taagaatcat caagtctgtg tcttcggata ttcagcctcg ctttcaactc      1380
     tcgcaaccca tggtggccgg acaacaacca agtcaacgaa gaagtttcca gtccaggatt      1440
     gccgtcaacg cagcgacatc ggaatcatcc aacagacttc cgtcgtgtta cgcgtgcccg      1500
     gaacagcact acatgtttca atgtcccaca ttttcgaata tgcccgtcac ccagcggcga      1560
     gaactgattt ccaaaaaggg cctatgctgg aattgcttcc gaattggtca tttgtcgagg      1620
     aattgtaact ccaagtattc gtgtcgtacg tgccgcggta aacaccattc gcttttacac      1680
     gtagatacgc aaccccaaag tagttcttcg acaccagcag tattcagttc ttctgaatcc      1740
     attctagaga atcaatctac gtcatcaact tccaatcccc aaacaggaaa tcctacaaat      1800
     gaaataagcc tatccgctct atccaatacg agcacggtcc tgttagaaac agtagcaatt      1860
     caagttgtcg atgattgtgg aaatcaattt gcagccagag cattgttaaa ttccggatcc      1920
     atgtccaatt ttatctccaa gaagctagct agaaaactgt ctgcccgaca agagccagtt      1980
     gatgtcgcga ttactggaat tggccaatcc cacaaggaac taaaccgcac agttactgct      2040
     acagtgaaat cccgcacgaa gcaatattcc aagaaattga gattccttgt cattgatgag      2100
     ccaacagcaa atttaccaac tatgtccatc aaccatcgta tatggaagct cccgatggtt      2160
     cccttggctg acccagagtt tcatgtacct ggagaaatcg atctcataat tggaggagaa      2220
     atttattgga ctcttcacac tggtaaaagg atccctctag gtccagatca gccacagaat      2280
     gttgagacgc atttcggttg gacagtatct ggcccagcaa atcgcagccc tccaacagtt      2340
     cctgcttcca tcaacgtttc cacaagtaag gatcgcctgg aagacgccat tcaacgattt      2400
     tgggagacgg aagaaatctt gaatactcca gtacgttcct tagaagaaaa gaagtgtgag      2460
     gagatgtaca caagcactac aacacgaagt ccgtctggaa gatacatagt tcgattgccg      2520
     aagatcgatg attttgaagg cacccttgga gaatccagag cgatagctgt ccgtcggttt      2580
     cagaacactg aacgccgttt ggaaagagat cctgtcgtat gtgaagctta ccatcgtttt      2640
     atgctggaat acgaagagct gggtcatatg aagaaggtta cggagccagt ggacgacaaa      2700
     accgtccatt gttatctgcc tcatcatccg gtatttaaag catcaagcac cactacaaaa      2760
     acaagagttg tatttgatgc ttcatgcaag acaacgtctg gaaggtcgct gaacgatatg      2820
     ttgttggttg gtccggtcgt ccaacaagac cttttatctc taacccttcg atttcgaatt      2880
     cgttcaatcg ccttagttgc tgatgtcgaa aaaatgtatc gacagatctt agttcaccaa      2940
     gatgatcatc cattgcagaa aattctctgg cgctcaagtc caactgaacc gatatccacc      3000
     tatgaacttc agactgtcac ctacggaaca gcgtcggccc cgtatctcgc caccagaacc      3060
     ctccagcaga tagcactcga cgcacaagct gtcccgccgc tgctatggca attattaatg      3120
     atttttacgt cgatgattgg ctttcggggg ctgaagatat cccctcagcg actcagttgc      3180
     tcaaagaagt ctcagagatt ctgtttgctg caggattccc attgaaaaag tgggtgtcaa      3240
     atgcaccaga ggtgcttcgt gacattcccg ccgaagatct agctattcaa cagcccttcg      3300
     acttacaaga ccctcagact gtttcaacat taggactcat gtgggatccg atgtcagatt      3360
     ccttgcagtt caaggttagc ctacccttgc cggctgctga actaaccaaa cgattgatta      3420
     tgtcctacat tgccacaata tttgaccctc tgggtttgtt aggacctacc atcacaaagg      3480
     ccaagcttta tatgcagggt ctgtgggctt tgaaagacga taataatcag acttatgact      3540
     gggacaagca tttaccacga aggcttcaag aacagtggaa ggagtttcac actacgttgg      3600
     atttactgaa acaagttcgc atcccaaggt acgtgattga attcaacgcc gtttctgttc      3660
     agctgctgtt tttcgcagat gcttccgaaa gggcctatgg agcgtgctgt tatgtccgtt      3720
     cagaatctcc ggcgaaagtc accgttcgtc tgctcacatc taagtcgaag gtagcccctt      3780
     tatccgttct acaaacaata gcaagattag aactgaatgc agctgaattg tcagtacgtt      3840
     tattcaaaaa ggttaactcg tcactgaaga taaatattct agtcaccttc ttctccgatt      3900
     caaccgtctg cctccaatgg ttgtactctc cagcttgtcg atggaagacc tatgttgcga      3960
     atcgtgtttc gaaaattcaa gatgcaactg acatatccaa ttggaagcgt atcgcagcag      4020
     ttgacaaccc agccgatgat atatcgcgtg gattaagccc aacagatcta ctcaattgtg      4080
     atcggtggtg gaatggtccg tcgtggctga tgctgccaac aacttcatgg agaagcctca      4140
     acacgcaaat tgaagaatcc accgctacta ttgcagagga acggaaagtg ccactaatag      4200
     ttatgcctgt aatcgagtcc gatttttggg agaagctgtt ttctcgcttt tccagttata      4260
     ctaagttgaa acgagcggtt gctggtgcga tacgttatct ccaaaaactt cgtatgcgca      4320
     ttgcttcacg atcatcgaag tttgtttcaa cggctccagc attcgaatcg tttgatcccc      4380
     tcaccactga tgaactgaaa gaagcggaaa tcttcctatg tcgcctagta caacgatcaa      4440
     gtttcgtaga agagttatcc gatgtttctg gcggaacatt agtttcccga tcttcatctt      4500
     tgaaatggct tggtcccacg attgatcgca acgggttact acgcgtcggt ggccggttaa      4560
     gtaacgccag tatctctgaa aatgctaaac atccaatcgt actgccttca aaacacccgt      4620
     tgtctgtatt gctcgcaaga cattaccatc aaattctact tcacgccggt ccacagttga      4680
     tgttgaccac cattcgtcag aaattttgga ttttgggcgc tagaaatcta gcacgacaag      4740
     tgtatcatca atgtaacact tgttttcgca gaaaaccggt gctcgtacag cagagtatgg      4800
     cggatctacc aacgtctagg gtttctctaa cgaggccatt ttccacctgt ggagttgatt      4860
     actgtggacc tttgtttgtg aaatcgccgg ttcgaaagca tggcccaagg aaggtataca      4920
     ttgccatttt tgtttgtttt tcgacacgag ctgtccatat agagcttgtc agtgatctga      4980
     ccacatcagc gtttcttgcg gcacttcgtc ggtttatagc tcggcgaggt aaaatagtcg      5040
     aaatccactc agacaatggt acagcattta agggagcctc acatgcactg catcgtgttt      5100
     atgaaatgct gaagcgcaac gaagacgacc gaaacaaaat attcaattgg tgtgcgaaca      5160
     acgaaattcg ttgtaaattt attccacctc gcgcacctca ttttggcggt ctatgggagg      5220
     ccgcggtgaa atccgccaaa acgcacttac taaaggaact ggggaacatc accattgcgt      5280
     atgaggactt gctcacgtta ttggctcaag tggagatgtg ccttaactct cgcccgttga      5340
     ctccaatggg aatcgatcca tccgatttag aggcgctcac accaggacat tttcttatcg      5400
     gcttcaccct gcatgaagga tactcctgat aatcgtctaa atcattggga acaaacacaa      5460
     aagcagtttc aacgaatttg gtcacgctgg tatcccgaat acctccaaca actgcagacc      5520
     agagcgtcaa agggatgtag gaactccgta ccgatcgagc tgggtagaat tgtgatagtt      5580
     aaagatgaaa acctgccacc cgcacaatgg cccatcggta agattacgaa aacacatcct      5640
     gggaaagacg gagtagtacg cgtggtgaca ctgaaaacgg cgtctgcaga aaacgttgtt      5700
     cgtccagttg ccaagatagc attacttcca cttccaaacg atcccaattt cgaaggctcc      5760
     ataaatcctg aagatttgga tcaagttggt ccgaaatagt tatcccgtca cacgcaactt      5820
     gaacgccaac acccacgcag tcaatctgaa ttcgtcaaaa tagttgcgtt gcgttgaatt      5880
     tcatggtgtt tggcgcaact aagattaacg tagtaaacag tgataattag tgttagttta      5940
     aatttgttga aatgctgaag atttcaaggt ggccggaga                             5979
//
ID   BEL-915_AA-LTR repbase;    DNA;    INV; 647 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-915_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-647
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-647
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4570-4570 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 647 BP; 167 A; 167 C; 151 G; 162 T; 0 other;
     tgatgaagat tgaaattagt ccaccctaat ctgaccacat ggtgcgtcat caatgtgtgc        60
     ggtgtatata cctttgatga gtgaccgcaa gtatattggt cactgctcaa gtgaaaggca       120
     gaatcaaata ctccatcacc ccagttattt ttgagctctt gccctggaag gttgccaccg       180
     atccgctcgc cggttgaacc gtggaatagt ctctccatcc cgtcagtcca agttcccaaa       240
     gtgccgcgtt gactcgctac caatcgttcg tcctccagaa gaagtgtgtg tccggccgcc       300
     gtggtgagcc cctattgttc cgtcgtcgcg aatcgcgagt gagtatttgg ctcttggccg       360
     agaagaccac tgcggtggag aatatagtgc cgtcgtacaa taccaccaac aacgttcgct       420
     acaaatccgt ccctctggtg aaagaggagg actgccagga ttcgccggaa tacccatgga       480
     ctaacaggta ctgtgttaaa ataagaaagt gggcgctata ccgatggtga tctagtgact       540
     ctattatcac tagaatcatc tctccatttt acggattgac tttccgaaca ccaaatttaa       600
     acggtgaaga aatccctcga attgccggca caccataagc tcgaaca                     647
//
ID   BEL-916_AA-I repbase;    DNA;    INV; 5422 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-916_;
KW   BEL-916_AA-I; BEL-916_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5422
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5422
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4548-4548 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are >98% similar to each other.
XX
SQ   Sequence 5422 BP; 1458 A; 1248 C; 1417 G; 1299 T; 0 other;
     aatggtcctt ctgcgtcgga tagttgttcg tgaatcgcgg taaaatgtcg aaattaatca        60
     atcgccgaaa cgcccttctg gcacaagtga agtgggagct atcagcagca gaaaagcttc       120
     aggagcggaa ggcatcttat ggggaagcag ccgatcgatt acagcagtta gcggagcttg       180
     ctaaaaactt ccggcaaacg cagaatgaga tcgaggagtg tcaaatcgat ccggaggcga       240
     ttgcatcggt gttcaatttc cgagaagagt ttgtttttca tgctactacc gagcaaaaga       300
     cgtcattgaa ggttatgcga gccaattcag gggccacggt caggacgatg acgagttttc       360
     aaaccccagt gaccgaacga tggccggttc ctgcaaagac ctccgtgaag cgatgcagat       420
     gctgttggag acacagcgag ccttattgtt gagtcaatcg tcggcgagta ggaacgtgat       480
     gcagattcga gacaacatga acgcagccag tgatgacgaa caattgttga accgggcacc       540
     gctgaacgta aaacttccta cgatcagtgt gccgatattc cacggggacc gaaaatcctg       600
     gagctctttc aaggacatct ttgagaccac gattcacaac cgaacggacg tgagagactc       660
     ggtgaaaatg cagtttttgg tatcattcct tgagggtgac gcgaaacaat tgatcaattc       720
     gtttcctatt tcggatgcca attacgctga agcatgggac actttgacaa actattacga       780
     caagaaaaag ttcactgttt tcgccctcat ccgtgagttt gtcgaccagc cggagattcg       840
     cagtgtcact tccaccagtc tacgcaaaat tgtcactact tctgatgagg tagtccggca       900
     gctgaatgca ttaggggcag aattcaacac tcgtgatccg tggctcattc accttctatt       960
     ggagaagtta gacggtgaaa cgcgttctct atgagcgcaa aaaatcgtag atgctgagaa      1020
     tcctaccttt gaagattttc ttaagtttct ggacaatcgc tgggacgcgt tggagacgtg      1080
     cacagcattc agcaagaagg cagtagcgga tgacgtgaag aaaggtgcag tgaaaaaggc      1140
     acctcagtcg gagaagaaag ctgcaacaga agtgaaaaag tgcgcgaaat gctctagtga      1200
     gcatccgatc tatctttgcg atgactttaa aaaactaaat gtgcagtgca gacgtgaatt      1260
     cgcacagaaa gcaaaactgt gctataactg tttgcgtcca tctcattcag tgaagatgtg      1320
     ttcctcgaaa tcagtgtgcc ataacggaga atgcaaacag cgacatcaca cgcttctgtg      1380
     caccaaggag gtggtgcagg atcaaccaac cgatcgaacg agtgacgtgc agcctcaggc      1440
     tcagcagacc gtgcagcagc gagaaggaac catcaactcg atggtagctc aagtgccagc      1500
     catatctgcg cccaaggtat cagttctacc tacggctttg atctgtgtga gagcagcaaa      1560
     cggaaagttt acgaagattc gtgcattaat cgattctggt tcagaagcgt cgctgatttc      1620
     agaggctagt gtcaacaagc tacgtctgcc acgatccaat gggaaatttg tggtttccgg      1680
     tttgggccaa caacaagcag gaacaacgcg tggagttgta gagctagtaa tagcaaaccg      1740
     gttccgtgag gaggtgatcc ttcgaacgaa agcttttgtg atgaacaagc tcacgtcaac      1800
     gttaccgtca cagcacctga gtctggaaac gagtcttcta agtgaagaag ttcagcgcaa      1860
     tcttgtcgac ccggaattca accggccggg tccaattgac gtcgttttgg gctccgatgt      1920
     gtttttgctc gtacttagag ctggccaagt acgcaatagt tcttgtgttc cagttgccca      1980
     aaatacaatc tttgggcttt tcgtgtcggg aaatcaagcg gtttacacga ctggtttgca      2040
     gagcaacttt acaatcgtta atttgcacac ggagttggat atcaatcgat cgttgcgtca      2100
     attttgggag caggaggagg ttctcaagcc acagcagctt actccttctg aagagaaagt      2160
     ggtcgcttac ttcaagtcca ccgtgtcacg agatgagatg ggtcgctttg tcgtgcgact      2220
     tccgttcgac gactcaaagc cggctcttgg tgagtcgctt actgctgcaa tgagacgact      2280
     gagaacgatg gagaggcgct tccaacgaga gcctgcgttt ggcaaacagt attcggactt      2340
     cattcgagag tatttagccc tgaaccatat gaaagagata cctgctagtg aaatcggcgt      2400
     agacgtcagc aaaagcttct acctgcctca ccacgcggtg gtgaagtccg aaagtacaac      2460
     tacaaaattg cgcgttgttt tttacgcctc ttgtgcgaca ggatcgggag tgtccctcaa      2520
     cgatcgatta ttgacaggac ctaatgtcaa ccaggacctc tccgtctttc tacgttttcg      2580
     gatgcataag atagcgattg caggtgacgt agaaaagatg tatcgccagg tctggataca      2640
     tccagaagat cgagattatc agcgtattat ttggcgtgaa aatcaggatc aaccagtgaa      2700
     gcactatcgt ttatgcaccg tgacgtacgg tactagtgca gcgccttatt tggccatcga      2760
     agcaatgaag gaggctgcac gaaactacag cacggtgtac ccggaggctg cagaatctat      2820
     catattcgac acgtacgtag acgatttcct atctggggcc cagaataagg aggaagcgat      2880
     ccagttgaga ggacaggtgg ttgaaatcct gaagtcagca ggctttaact tgcgtaagtg      2940
     gtccagcaat tgcgcagaag tcttggagga agttgatagg acagaccaaa atcctgtgaa      3000
     cgtaaaacta gccgagcatt cgaatgttat gaaggcgttg ggcgttcagt ggcttcctga      3060
     ggaggacatc ttcaccttcc aagttcatct tcaattggac agtgtgaaca ccaagcgaca      3120
     gttgttatcg gacgcttcaa aactgttcga cccattcgga tggttgtcgc ctgttacggt      3180
     tggcatcaaa atactattcc agcagctttg gcttagtgac atttcctggg acgatccact      3240
     gcctgcagcg attgaagaat catgggtcaa ggtcaagcag aatctcaaga aaatcgaaca      3300
     agtccgtatt ccgcgcttcg ctgcaaacta cgacggcaag gtggaacttc atggatttgc      3360
     agacgcctcc gaagtggcgt atggagcggt ggtgtatacc cgaacaagag accaagaagg      3420
     aaacatcgtg gtgaacttat tagcagcgaa aactaaagtg gcaccgatca aacaggtttc      3480
     gttgccacga cttgagctta gtgcggcgtt attgctggca gaacttatga agcgtatcac      3540
     ggaagcaata tcgcatctta ccgtggagca ttgggcatgg acggacagca cgattgttct      3600
     tcagtggctt tctgcacacc cacgtaagtg gaagacgtac gtggcaaatc gtacatccgc      3660
     cattctcact tacttacctc gtgaacgttg gaaccacgtc agcaccgcac acaacccggc      3720
     agactgtgct tctcgtggtc tgacgcccga tgaacttctg gaacaccagc tctggttcca      3780
     gggaccagcc tgattgagta tggatgaggt gaattggaca gtacaacaga accctccagc      3840
     gaacgttgaa cagccacctg aggaacggac ggttaaggtg atgtacaatg tgacacagct      3900
     gcacaacaac tactatgcgg aacggattat tcttgaccgg cgttcagaat tcagtctggt      3960
     agttcgatca ctagcgacgt tcgccagatc actgcaagct tggaaaggaa tgaagtttga      4020
     ttctggtctg acgccaaacg aacttgaatc agtcaagatg aaactagcac gattggctca      4080
     agaggacgtc tttaaggagg agatggattt gctggccaga ggagtagtgc ttccggccaa      4140
     gagtaagttg tcagctctgt acccattttt ggatagcaat ggtacaatgc gtgtcggagg      4200
     tcgcctgcag aactctccat acgcctacga tgtgaaacac ccgatcattc tgccgcgaga      4260
     tcatcgagta acggatctac tgctgcggga atttcatcag cacaaccgtc acgcggggcc      4320
     aacactgcta acagctactg taaatcagca atactgggtg atcggattgc gaacagcggt      4380
     acgtcgaaca gttaggaatt gtgttcgttg ggcgaggctt aagggacaaa ctgcgagtca      4440
     actgatgggt tcattacctg cgtcgagagt gatgggaacg cgtgccttcg tcaatgtcgg      4500
     cgttgattat gccggccctt ttgcgattcg agcttcatgt gtccgtggcg ttaaaacaac      4560
     gaagggttat cttgcggttt tcgtgtgcat gtcaactaag gccgtgcact tggagattgc      4620
     cagcgactta tccaccggta tgttcattag tactctcaag cggttcattg caaggcgaga      4680
     ttatccgtgt gaaatatggt ccgataacgg aacaaacttt gttggatccg atcgttatct      4740
     gcaggagctt caggacgcat tgaagaaaaa cagcaagcca gctgaacatt ttttggctaa      4800
     cgtcggcatc aagtggattt ttaatccacc ttccgctcct catcgaggag gcatttggaa      4860
     agcggcggta aaaagcgtta agaggcatct cattgcggtt gtgggatctg atgcaaccac      4920
     ctacgaagag ctgttgacca tacttactca agtagaggca tgcctcaact cacgccccct      4980
     gtatgcactt tccaatcttc ccgatagcta tgatgccttg acgccagggc atttcctaat      5040
     aggccagtca ctcaacttga ttccggaacc tgacgtctca cgtattccta ccaatcgttt      5100
     ggacatgtgg caacgaatgc ataagcaaac catcgaagtt tggaggcgtt ggcgcgacga      5160
     atatttaagt agcctgcaac ctcgtgctaa atggcgtgcc agcgaacaaa acgtgaagga      5220
     gaatcaactt gttcttgtga aaaacgacaa cactccgccc gcgcagtggg agttagcgcg      5280
     aatttccgag gtacatcctg actccactgg cattgtgcgc accgtaacct tacgacgagg      5340
     acaagctgaa tatctacggc cagttcagaa gatctgtccc ttacctacgg attgaggcgt      5400
     attgcctcaa ggtgggggtg ga                                               5422
//
ID   BEL-916_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-916_AA-I;
KW   BEL-916_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-221
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-221
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4571-4571 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 221 BP; 66 A; 47 C; 40 G; 68 T; 0 other;
     tgttcgggca acattgccca ttcgtttcac ataacataaa tgcacctggc aactctgcac        60
     aggagaagaa aacaaaccaa cttttgtaac aacaaagttc gtaataaatt cgagaaagca       120
     agtcggaatc aaaattacat ccgtgtcttt ttattggctt ttttccggtt tactccgcga       180
     tattctgtgg tgttcgtcga tttttagttc aaggtccaac a                           221
//
ID   BEL-917_AA-I repbase;    DNA;    INV; 6828 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-917_;
KW   BEL-917_AA-I; BEL-917_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6828
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6828
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4549-4549 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 6828 BP; 1898 A; 1522 C; 1662 G; 1741 T; 5 other;
     tttggtcctt cgagccggat gacttaagga tagttgtcca ggaaaggtga aattcgggtc        60
     caggctcatc gaagaaatcc gccattggag gcattatcgg accgccggat tgcgccatca       120
     cgatacaatt cattgtctcg attactattc tgtggaatca accgccatca tcaccaattt       180
     ccatccgtac cgatcgccat cacattcact cgtccgttcg gcaattatct cccacttgga       240
     tgagctggga ttaaccatca gcctacaata cgaaaaaggg tttcgttaga aggaattcgt       300
     ttcgcgctgg ataggaatca tcaaatggtc ccacaggtgg gtacacatta gtataatgtc       360
     cagccgaagc taggatttat gacactgcta acactattca ttctctgcac gagcgctaca       420
     cgtatacgct atcgacatca gcaatcggaa aggataagga tccgttctat caacattccc       480
     atcgagaggc accaaaacag tcgattgacc accgggcagg ccgccctggt tcgtccaggt       540
     aacttaatga atagatatat gtccagttgt cgctaggttt accggacaat ctacacaccg       600
     aattcttctc gtattctcta ttgcatccca ttcgtcatcg gagcacaacc aaaacaaacc       660
     gctgagaaca ttcatcgcga tcagcagtat agtcgcctac caataccaat cgaacgagcg       720
     ccatccacaa ccacgtgacg tcaccacaga aatcaacttc gcacatggac atcgaattgc       780
     acagcactat ttcaccgatt ctcacccgcg tttgaatgca tcacgctgca tctctggtca       840
     tcggaggccg taattagtcg cacaggttag tgaacacaac acttatcgcg ctatttagta       900
     tatgaccagc cgatgctgga cttttcggat actacatgtg tcactttata cctctttgaa       960
     cactgatgta tgactggcgt ccgtatggac tgatcgatac catttgattt tgtggaacgt      1020
     gtttccgagg ggccgaccaa agcattctct acacgtttca cgtattaagg aggaacagtt      1080
     gtgattaccg tgaacagccg gcactctgtt ttttggaata ccagtaccat aaattggtct      1140
     ctcaggtcag tttaagacag tatatgccct gccgaggcct tggatttttt tgaatactac      1200
     ataaatgctt ttccctcatg tgaacccatg gtactggcaa cctgatgaat gagattttca      1260
     cctatgcaaa ttgatatcaa ccgttgattg gaagccgtac atacctgtag aggggaagtg      1320
     atattttttc gtgaaggtca gtagctctac agtgtatgtc tagccgaagc tagacagaaa      1380
     tacggaatat tacacctgtt ttctctcatt cattactgga atacgccctg ccgtacaatg      1440
     ccgccgaaga caaccgcatc gacgaagaag gagcaatcac ttcgggtttt gcaaactcgt      1500
     ctcaattcat cactggcaat gttcgacgag attatcaaat tttctcagtc aatgaatgag      1560
     gataccacag caattcaggt gtcagtaagg gttgacaagt tagaggagtt atgggaaact      1620
     atcagtgagg ccattattga ggtagaatcg catgaagatt atgcagatga cgatgaagag      1680
     tgcacaaagg ttagggcaaa atttgtacaa cgttattttt tggtgaaaac gtcgttgctg      1740
     gagaaggcca aggaactgga ggatgccacc ttggaccaat cacgtgtatt ggacgcctcg      1800
     caatcgcaat caacgctgga tcacgtgcga ctcccacaaa tcaaattgca aactttcagt      1860
     ggcaatattg acgagtggtt gagctttcgc gatctctaca catcgctgat ccactggaaa      1920
     accgatcttc ccgatgttga gaaatttcat tatttaaagg gatgtctcac cggtgaagcg      1980
     aaagccctga tcgatccatt ggccatcact aaggcaaatt atttagtggc atgggataca      2040
     ctaacaaaac gttacaacga tagcaaattg ctgaaacgtc gacaagttca agctctattc      2100
     aagttacctg cgttgacaag ggagtcagct acggagcttc agtcattact ggaaggattt      2160
     gagaggatca tccaaaacct tgatcagctt gtccagcctc aagattataa ggatctgtta      2220
     ttactggata tcataggttc ccgccttgac ccagtaacac gccgtggatg ggaagaatac      2280
     tccgcatcga aagagcagga ttccatcaga gacctcaccg agtttcttca aaagcggatt      2340
     agagttctag gatcactacc atctaaacca gtcgatctta agggagattt ggccggtatt      2400
     tccaagaaaa ggttctccat cccacgaacg agtcacagtg cagttcaagc ttctggtgtt      2460
     cgatgcgcag cttgttcaga atctcatcca ctctatcaat gtccatcctt tcaacgtctc      2520
     acagtttctg ctcgagataa gctgcttcgc aaccattcgc tgtgtcgtaa ttgcttccga      2580
     cgtggacatc aggcatccga gtgttcttct cgcttcgttt gccggaattg taaggcgaag      2640
     catcatacca tggtctgttt ccgttcggac aagagtgatg gagctaaggg cagcacatcg      2700
     caaaaccaaa cgcaacctga atcgactaat gcagctacag tggtggaccg taatactcag      2760
     ccaagtacat ccgcaaccac agattcagtt tcctccaata cggcattcca acgtgcgtct      2820
     tcggtgctgt tagctacagc ggtggttatg gtagaagatg agacaggcat cagttttcca      2880
     gctcgggcct tgctggattc tgggtccgag tgcaatttta tgacagaagg tttgtgtcaa      2940
     cggttgaata tccaacgaag gcgttcggat atatccgtcc tgggaatagg acaagctaat      3000
     acgcgagtta aacacaaggt tacagcaagg atcaaatcac gggtgtcgga attttctcgt      3060
     gatatggaat tcctcattct gccaagggtt acggcagatc tacccaccac aagtattcaa      3120
     acggcatgtt gggagattcc tgagggtgtg gaattagcgg acccagcatt tttcaactcc      3180
     aaggcggtgg atatggttct cggaatccaa tatttctttg catttttcaa gaccggcaag      3240
     gaaatagatt taggaaatgg acttccaatg ttgacagagt cagtattcgg ctgggtggta      3300
     tccggtttgg tgaatgctga tcgtcctggg tcaacaattt cctgtaacat ggcggttaca      3360
     gacaatctgg aggaaatatt atctcgtttc tgggcctgcg aagaaatcga gtcaaccaac      3420
     aattactcac cttcggaagc aaggtgcgag gagcactata gttgcacggt gaagcgtggt      3480
     atggatggac ggtatatagt ctctcttccg aaggatgata tcgttctagc agggttaggc      3540
     gaatcaaggg atatcgcttt ccgacgtctt caaggaatag aaaggcgatt actacgggaa      3600
     ccacagctac gagaacagta caatcaattc atggaggaat atttggagct gggccacatg      3660
     cgcagggtgg atgtgagctc agacgaggaa gacaataggt gttatcttcc ccatcatccc      3720
     gttgttaagg aaagtagcac gaccaccaag gtcagggtgg tgttcgatgc gtcctgtaag      3780
     acgagtactg gagtgtcgct aaacgatgta ttactggttg ggccagtgat tcaggatgat      3840
     ttgcgtgcta ttataatgag gkcaagaacc aaacaaatcc tcattgtggc tgatgtcgaa      3900
     aagatgttcc gtcagatttg ggtggaccag aaggatcagg ttcttcagaa cattctgtgg      3960
     cgtaaggatt tcaatggaag ggctgaaacc tacgagctcc gtacagtcac gtacggcacc      4020
     aaaccggctc cctatttagc kaccaggacg ctaaagcagt tggcactgga tgaaaaacaa      4080
     cggtttccca tggcggcaag ggcagtcatg gaagatgtct acatggatga cgttctgacg      4140
     ggtgaggatg aaaccgatac tgcaaaacaa ttgcgaatcc aacttgatca aatgatggag      4200
     agcggaggat ttcatctgag aaaatgggcc tcaaattctg cagcagtatt ggaaggagtt      4260
     tcaagcgaga atctgkcgtt gacaagagac gaaggagtac aactcgatcc agatccagcc      4320
     gtgaagacct tgggattgta ttggtttcca acaagcgata ttctgaagtt tcagttcaag      4380
     atcgtcggaa ttggtccgaa tgaaaccttc acaaagcgga agcttctgtc aatgattgct      4440
     actttgtttg atccgcttgg attgattggt gcggtgattg tcactgccaa aattttgatg      4500
     cagcgtctgt ggtgctggac cgatggtgaa ggaaggaaat tagattggga tcagcccatt      4560
     gagacgaatg agtgtcaaaa ttggatggaa ctctatcaac agatcccact tctaaatgaa      4620
     ataagcattc cacgttgtgt tgtagcccca ggagcaacaa gcactcaaat acacttcttt      4680
     tccgacgcat ctaagatggc ctacggatct tgtgcttacg ttcggagtat agatgcctct      4740
     ggacgatgtt gcgttgcact gctgacctcg aagtctaagg ttgcaccatt aaaaacacaa      4800
     tcgattccga gactagagct ttgtggagca ctattagcag cacaattgaa ggaaaaggtt      4860
     ttcaaatcct tgaaaacgga ggcggaagca ttcttttggg ttgactccac ttgcgtactc      4920
     caatggctga aagctacccc tactacttgg aacgtgtttg tcgctaatag agtagctaaa      4980
     attcaacggg cgacagagga ctgtgtatgg aaccatgtcc caggagttca gaacccagct      5040
     gatttgatat caagaggatt gctaccccag gaaattcggg aaaatcagct ttggtgggaa      5100
     ggcccaccgt ggttaaagct ggaacaaatt cattggccaa atcaattacc agaggtacaa      5160
     ttggaggaaa tagaggaaga aatacgaaaa tccgtcgctc atagtgcagc acctgaagca      5220
     gaaaatttcg gaaaatggta cgttaaaagg ttttcgtcgt taaccgatct gatttgtcgc      5280
     acagcataca ttttgcgctt tatggagata ttgaggaatc ccaggaaaag gccaaaattt      5340
     ccggcatttc ttacgacaga agaacgtcac gaggcagaaa tcgcaattat tcgttgtgtg      5400
     cagagggagg aattcgataa ggagtggttg gcgctagtca aaagggaacc ggtggctaga      5460
     aattcgccgc ttcgttggtt taatccacag ttgtcaactg accatgtgct tcgtgttggc      5520
     gggaggttga aattttcact ggagtcggat agcactaaac atccactggt gctgccagca      5580
     aggcatccac tgacaagact agtgctacaa cactaccatc agaaacttct gcatgctgga      5640
     cctcaactta ttctagcaag tgtaaggcaa cggtactggc cattaggagg cagaaacgta      5700
     gctcgtcaaa ttgtgcatga atgcatgcga tgtttccgaa ctaaaccgaa aactgttgag      5760
     cagttcatgg gagaattgcc gtccgctcgg gtgacagtag ccagaccgtt ctcaaaaaca      5820
     ggagtcgact attttggtcc cgtgtacttt cgaccaggtc ctcggagaac tgcgatcaag      5880
     gcatacgttg cacttttcgt ttgtatgtgt acaaaagcag tccacttgga actagtgact      5940
     gacctgtcga ctgatcgatt cctgcaagca ttgagaaggt tcatcgctag acgaggacgc      6000
     tgtacagaca tatactccga caatggaacc aattttgtag gtgctcggaa ccatcttaga      6060
     caactgttgg agcttctacg cagcgacgtc cataaaaggg agatgataaa ggaatgtgcc      6120
     gaggagggta taaattggca ttttaatccg cccagtgccc cgcactttgg cggactttgg      6180
     gaagcagcag tgcgttccgc aaaaggtcac ttgttgaagg ttctagggga tacggtcgtt      6240
     tctttcgagg acctctgtac actcctaagt caagtggaag cttgcttaaa ttccagaccg      6300
     ttgaccccct tatcagatga cccatcggat ctagagccgc ttacacccgg tcattttctt      6360
     atcggcgcac ctattcagca acttccagat cacgattaca ccgatgtacc matgaacagg      6420
     ttgcgtatgt tccaactgat ccagaaaaag ctgcagctgt tttggaatcg ttggaggacg      6480
     gaatatcttt cccaactgca agggagggta aaacgatgga aaccggctgt tccgatatca      6540
     gttggaaaac tcgttataat caaggaggat aatacgccgc cgcttcggtg gaaaatgggt      6600
     agaattcagg aggtccatcc gggggcagac ggagttgtta gggtcgttac actgaagacc      6660
     gcttcaggat tgtcaaaacg cgcagttgaa aaaatatgcc ctttgccccc ttcgtcccag      6720
     ccttctgaag gaaccmatcc acattaggtc gatcacatgc cacccatcct gtgttcgaag      6780
     aggttttatt tcatttcaga aattccggaa tttcagggag ggggagta                   6828
//
ID   BEL-917_AA-LTR repbase;    DNA;    INV; 516 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-917_AA-I;
KW   BEL-917_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-516
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-516
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4572-4572 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 516 BP; 171 A; 104 C; 117 G; 124 T; 0 other;
     tgtcgaggaa tgaatcaaaa tccccatcca ctatcccccc gttgatatta tttggagctg        60
     tggatcatat tctgctacca cggtgtgata tggttaccaa ccacaccaat gatagctcct       120
     cagcaccaat actgaagaga gcgacgaata gtgtagaagt agcaggagaa atgcactttt       180
     tgaggtcgat acccgccaat gtaaacgtaa gtcagtagat agcgagaaga cgatcaacag       240
     gcagatcgat aggtggtcag ggaccaaaat tgtattttag ttttaagcga ataaatgtag       300
     tgtagtgttt tgaataaagt gttttatgtc tgtaaggtaa taatgtgata agtgcaataa       360
     acttgtattg tgtcgtgttg tgccaaaaaa aaggaagcct tactcacccg aactgaagaa       420
     aacccaagga gcattgccca tcactatcca aggaaggaag tctacagtcc actccaaggg       480
     ctacccaaag ggaagaacca gtccccaggt acaaca                                 516
//
ID   BEL-918_AA-I repbase;    DNA;    INV; 5927 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-918_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5927
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5927
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5927 BP; 1700 A; 1310 C; 1480 G; 1437 T; 0 other;
     aacttttaga ttaatcgatc aaacatgaac ggcagttgtg gagaaacacc ggccccagaa        60
     tcgaactgtg tgaactgcga tcgattggac agtgctgaca atctcgtgca atgtgaccaa       120
     ttcgatgcct ggtggcatat gtcatgcgcc ggagtttcac aatccgtaga aaatcgacca       180
     tggatttgtc agaagtgtct tcaggagctt agaagcttgc ggtcgccatc actctcggtc       240
     gcgtccaggt cctcccgttt ggacttgcaa ctgcgcaagt tggaagaaca atacgctcta       300
     aagcggaaat tcctggatga gaaatacaag ctactcgaac acgagctgga tgattcaatt       360
     aacagtgctg gatccggaat cagcagcata atgggtgagc gagaaaactt tgacaaggtg       420
     aggctgtgga ttaatacgtg tgcggattat caagcaggag gagctgttgg tcgagccaac       480
     caaccattga tgaggaagta tacgtcacgc aaccttggtc aagcgatcgc gaataatccg       540
     acaagcaaca tggcatcgaa ccagctcaaa ccgagtcaac tggaaggccc caattctttg       600
     gatgacgacg cgactactaa ggggcacaaa ccgactccta aaccgagaag gctagttttc       660
     ggcggtaatg agagcgacaa ccagaacgta tgtacccatc ttccggtatc cccctcactg       720
     gcaccaggta aatcactcaa tgatccaatt cacgatgagc acactcaaca gagtgtcgat       780
     atgaacctcc tttgcaaacg attgggagat gttggattgt catgtcctaa cccagtggaa       840
     gcaatcccat catcgttaga tttccttcat aagaagttcg ttcactcgaa caaacctcct       900
     accaggcaag cttggcagcc tcaattcgag cctcaaggta ataatatgac gcaaccaatt       960
     cgtagcattc ctactactct gaatgctcaa gatacgaatc tgtctgagtt cgtactgacc      1020
     ccctcgcagt tagccgcgag gcaagtaatg cctcgtggtc tgcccttgtt ctctggcaat      1080
     ccgacagaat ggcctgtctt cataagcagc ttcaaaaatt ctacgctagc ttgtggatat      1140
     acgaataccg aaaacttggc tcgactgcag cggtctataa aaggtcaagc atacactgcg      1200
     gtacagagtc gattgcttct tcccgagtca gtaccgtatg tgatcgatac tttgtatttg      1260
     ctttacggaa ggcctgaaat attaatcaac gctcttcttg aaaaagttag attagtgcca      1320
     gctccccgaa tcgaaaagct cgaaaccttg attgatttcg gaatggccat acagagcctg      1380
     tgtgaccatt tggaggcggc tggtcagcac gcgcacctgt ccaacccttc acttctttcg      1440
     gagcttgtgg gcaaattgcc cggtcatgtc aaaatacagt ggggcactta tctccgacag      1500
     tatccagaag ttaatttgaa aatttttgcg aacttcatgt ctgatgtcgt cctgtcggtg      1560
     agtaaagtga ccgtgtacgc aagttcaagt gccaaaggtg atgtaactga aaagtccaat      1620
     ccgaagcagc gcggaatcct aaacacacat gttggtgatg tagaaagcga acaggaacaa      1680
     cacaaattgt gtaatgcgtg ccggcagcct gatcatcgga ttgttgaatg cagtgacttc      1740
     aaacagtgtt ccgttgacga gagatggaag ttgattcagg agagaggact ttgacgaacg      1800
     tgtcttaacg atcatggtag gagaagctgc agaagcacta atcgctgtgg acttaacgga      1860
     tgccaatacc gtcatcatcc tcttctgcat tcggtgcaac ccaacacagt cacgcaagcg      1920
     gacaaccatt ctcatcgcca atccaaaagc tcggtgcttt tccgcattgt ccctgtcacg      1980
     ctacacggcc ctgagacatc ggttgatacc tacgcgttca tggacgatgg ctcgtctatg      2040
     acgctgatcg aggacagttt ggcaaaacaa cttgttgttg acggagattt gcgaccactt      2100
     tgtctgttgt ggacaggtaa tgtttcacgg ctggaggacg tctctcggca ggtcaagttc      2160
     agtatttctg caaaggataa taaaaagaag tatgagttga tcgacgtacg cacggttgag      2220
     gaatttgctt tgcctcagca atcgttgtct ctggagaaac tggctgcaag atacgagcat      2280
     ttgagaggaa ttccggcgtc aagctattac gaagcaaccc cacgattgct gattggagtg      2340
     aacaacctga gtgttatgct tccactacga gtgagagaag ggctgcgcca agaacccgtt      2400
     gccgcaaaaa caaagttagg ttggcgtatt tatggaggag aaggatcgga ctgccagcca      2460
     ctttcgttca actgtcatta ctgcggatgt aacggagaac tggattcaaa tgtgcacaat      2520
     actgtgaaaa gttattttgc tttagaagac agcggagcga aaagtgaagt gatcaactac      2580
     tcgaaggatg aagaacgggc tctgtgtatc ctggagcaaa ctactgtgcg cataggaaat      2640
     cgcttcgaga caggactctt atggagaaca gagcatgtag agttcccgga gagttacagt      2700
     atggcgctca agcgtctgga atgcctagaa aaccgcatga gccgaaatcc atcattacgt      2760
     gataatctgc agaaacagct gacagaatat gaatcaaaag gatatgcaca tcgtgctacg      2820
     cctgaagaac tcgtccaagc agatccacgg cgggtatgat acttgccact tggtgcagta      2880
     tccaatccaa ggaaagcgaa agttagactg atctgggacg gtcgcgcgca ggtggatgga      2940
     acatctttca attcgtatct gcttaaggga ccggatcagc ttacgatgtt acctgcggtg      3000
     ctaatgcgtt tccggcaatt caaagtggga gtttcgtctg acataagaga aatgttccac      3060
     caaatctcga ttcgccctgc ggacaggcat tctcaaagat tcctgtggcg tacggatcca      3120
     tcaagaatgc ctgatgtata tataatgaat gcagcaacct ttggatcagc gtgttcgcct      3180
     tcatcagcgc aattcattaa aaacaaaaac gcatatgagt ttaaagatca atttccacga      3240
     gccgtagaag gaatagtaaa gaatcattat gtcgatgatt ctttggaaag ctacgaaaac      3300
     atcgaagagg cgacaagaat ttcaatggaa atgcgttcga ttcacgaaaa aggaggattc      3360
     gagttaagga actggttgtc caatagcgaa gaagtactgc ggaaccttgg agaaaccgga      3420
     ccattggagg ataagagctt cgtagtcaac gacgaatgtg gatgcgagcg tgtattgggg      3480
     ctgctgtgga agaccaaaca ggatgcactc ggtttctcta cagacctgaa agacgacgta      3540
     aagcagctaa tatgcagtga tgaacggccg acaaaacgcc aaatgctgaa gtgcttaatg      3600
     gctttttttg atcctctcgg tttgttgagc gttattctcg tgcacggaaa ggttttgttg      3660
     caagaagtgt ggcgctcagg agttctttgg gacgaaaagg tgggtgatgc gatttatgaa      3720
     ggctggaaaa gatggacatc tttattgaag caaatcgatt cgattcaaat accacgctgt      3780
     tacttcgaag gtgcgaccag ctttcattat caaaatctcg aattacacat attcgttgac      3840
     gcaagcgaat cagcctactg cgcggtggcg tatttccgtg ttatcaatga cgaaggaatc      3900
     gcaaattgtt gccttgtgac tgcgaagaca aaagtggccc cactaaagcc tctatcgatt      3960
     cctcgccttg aattattggc tgcggtgctc ggtgcacgtt tgatgagact ggttgaagaa      4020
     agccacacat tggtagtgaa acgacggttt atatggagcg attcagcaac tgtattggca      4080
     tggctaagat cagatgcccg acgatacaag caatacgtct catttcgcat cgtagaattg      4140
     ctaactttaa ctaatgtcga agattggaga tggattcctt ctaagctcaa cccagcagat      4200
     gaggctacaa agtggggaag aggcccacta ttgaccaccg atagtacgtg gttcaaagga      4260
     cctacgtttt tgagactacc agaagcagac tggccaaagg caaagcacgt tgcacagagt      4320
     tccgatgaag aattacgttc atgttatgca catcacgggt taaatgtgcc ggaacaagtg      4380
     ttcaatctgg ataggttctc aaaattcgca aaattagtca gagtagctgc gtacgtgctc      4440
     cgtttcgtgc aaaacctgag aatgaagaaa gagggcgttc ctacagttca aggtcaccta      4500
     gaaacagagg agttgcgcaa aggagagtgc acgttgattc gtctagtaca gcagcaaagt      4560
     ttcatggatg agttcttgcg aattacacga aatcagaata agcctgatga acaacaagaa      4620
     caattaccct gttctagtgt attataccaa ctatctccct tcatggatga gaacggagta      4680
     ctgcgaattg atggacgagt tggagctgca cagaacgttc aacaggatgt gaagtttcct      4740
     ataattttgc cgcgagacca tcgtttcact tatctggtat tagacgacta ccattgcaag      4800
     ttccgccatg cgaacgcaga gacggtcgtg aatgaagtac gccagcgctt ctatgttcct      4860
     cgcctgcgag tggctgtcaa gaaaatcgag agaacttgcc aatggtgtaa aatttataga      4920
     tccaagccga aagtgccacg aatttctcca ttaccattgg cacgattggc ctcgttcacc      4980
     agacccttta cctacgtcgg actagacttt tttggacccc tgaccgtcaa ggttggacgt      5040
     agtgacgcaa aacggtggat tgctctgttt gtctgtatgc caacacgagc tgtccatgtc      5100
     gaggtagcct acagcctcag taccgaatcc tgtgtgaagt gtgtacggag atttatttgt      5160
     cgacgtggat cgccctcaga aatatattcc gataacggta cgaatttcgt aggggcaaat      5220
     aaacacctga aacaacagat cgagcaaata gaagatgacc tatgttctac tttcaccaac      5280
     accagcacca aatggttgtt caacccacca ggaactccac atatgggtgg atcctgggag      5340
     aggttggtta ggtcgataaa aactgccctg aacgtagcat acaataacaa ccgaaagctc      5400
     aatgatgaag gactggaaac attagtggta gaagccgaag gaatcgtgaa tagccgccct      5460
     ttgacatacc tcccactgga ctctcaagaa agcgaagcat taactccaaa ccacttcctt      5520
     cttggaagct cggatggagt ccgacaacca atgatgacgc caacggatcc tgtgaccgct      5580
     ctgaagagtt cttttgatca aatacagctg cagctagaca tgttttagaa acgatggact      5640
     cgggaatatc tgcccacatt gacaaggcga ccaaaatggc atacagacgt taaggcacta      5700
     actgttggag atttggtggt cgtggtagac gagtccagaa ggaatagctg gactcgcggc      5760
     cgcatcgtac aggtcattcc cggtagcgat ggacgaatcc gtcaagctct tgtagaaact      5820
     gtaagggggg tcttgcgtcg atcagctgcc agattggtag tcttagaggt gaacaatgga      5880
     ggtaaaactg gatcaagtga cggtgaccag tgttaatggg gggatac                    5927
//
ID   BEL-918_AA-LTR repbase;    DNA;    INV; 600 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 26.08, Created)
DT   25-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-918_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-600
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-600
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4573-4573 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 600 BP; 204 A; 119 C; 126 G; 150 T; 1 other;
     tgttgctggc agcactgagc gggctgcgac gctcatgggt gaaggcgcag aaggggccca        60
     tgcagcgcac gctgactgat gtcaaagttg tcgaccctgc aatgctttca aatagaggaa       120
     aaagtgacaa gattcatttc cgtccattca gtttttcgaa gcaaaaccac gttaggcggt       180
     gaaaaataga aaaagcccta aaattagttg ctacctgcag atttgaaaaa ctaaaagttt       240
     caatttgtta tattcctatc gatttcatca aatagtcgaa aatcgattgc taatttgtta       300
     ctaaacggga aaaccgaaac cgtaagtttc actaaatggg aaatgtaagc ccgcagagta       360
     aaacctaacc tgagaaatgt ctgccttttt agaaataggt gtaggagacg gaagattctc       420
     gcagaatcaa tgagagcatt tgcaaaccga ttaatgtaag ataaaacaga caattcaact       480
     gtaaacaata ctaaaaaaca acttcaatta cagctaaaag cgttacgtga tcacaacaat       540
     ctgtgtttgt tcatggctwa aagaaatcgg ttctcctccc acgcctcggt tgtcggaaca       600
//
ID   BEL-919_AA-I repbase;    DNA;    INV; 5967 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 26.08, Created)
DT   28-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-919_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5967
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5967
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5967 BP; 1714 A; 1351 C; 1489 G; 1413 T; 0 other;
     aacctcaaaa attaatgcga tgtcgtccga tgaaagtcaa cataacccca atgagacagg        60
     ctatgattgc gctctttgtg aagaaccaaa tcatgctgat ggaaacatgg tatactgtca       120
     acggtgtcgc agatggtacc atttcatgtg cgccaaggtg accgaagcgg tcaaagatgt       180
     gacctggagc tgtgaagatt gccgacatct tggcgctgcg tccaacgtga cagatagcat       240
     cgtagtggtt actgactcga cggataaact tcccgaaccc gtcggcaagc cgccgtcgtc       300
     taagaacgcg gttggagaag ataatgaaca agaagaggcc gattcacagc ttcaacgcga       360
     gttagaacaa atgcggaaga actttcttcg gcaaatgcaa cgggagaatg aaaaacgcat       420
     gatgcagcta gctttggaac gtgaaatgct gcaaatgaga agggaagccg aagcagaatt       480
     ccggaaacag aggattcaat tgtataaaga attcggatgc gaggataatc cactcgaaga       540
     agaagagaat gctgtcggag gcgcttccga actaaatcgt gagccagcgc aggctaattt       600
     ggcaaaggtg tggatggata aggaatcagt ctccgttgga caaaataagc cagtccaaga       660
     tagccgggga gcctatccca aaaattccac tcccaagaat gctacgcagt ttggcaacgt       720
     cgaaaacgtt cagcggccat ttccgccagt gctcgaagat gtgacaccgc ttcgaaatcc       780
     gcaattacca ttcacaaagg cagacaagcc tgctgagcag cctctaccag tgaatcgctt       840
     gaacaatcct caagttagta acgctttccg tggtttcgaa gtctcgaacg cggcaccctt       900
     tgcaaatcaa ggtcaattta atcaactcca tgccacagaa atggagcaag agctaacaaa       960
     atctcaaatc gctgcgagaa aaggtccatt ttcaaagctg ccgatattca caggacgacc      1020
     agaggaatgg ccgttgttcg tgagcagttt caacaatgga aatagggcgt gcaactggtc      1080
     caaccttgaa aatcttggca gacttcagga gagtattaaa ggaccagcat tggaggcggt      1140
     aaggagcaga cttcttcttc cagaatccgt tccccaggtt attgaaacgc ttcgatgcct      1200
     ttatgggagg cctgaacagc tcctgcattc gctaatgcaa aaggcacgaa aagcagaatc      1260
     acctcgtgtc gatcgcctca cgactttcat caactatggg atggttgttc agcagctttg      1320
     cgaccatctg gtggcttctg gactcgttga ccacctagtg aatcccatgc tcatcacaga      1380
     gttggtggaa aaactgcctc ccagtactaa actggaatgg gtaaggttta aacgccagca      1440
     aaatgcagtc actctaagta ccttttcgga tttcctgtct ggaatagttt cggaagcctc      1500
     cgaagtcacc ctgtatacag aaaacgttgt agaggttcgt cccaaccggg ataggaggga      1560
     gaagaaacgt aatgataaaa atgaagggtt cctgaacacg cacgtgggcg tcgagcagtc      1620
     tggtaaccaa agaaagggtc aggagtctag cgagaatcaa attatgtccc gtaagccgtg      1680
     ccgaggttgc gatcgattag atcatcgcac acgtttttgt gaagaattca aaaagcgcgc      1740
     ctgggaagaa cgtattaaga tagttgagaa atggaaactt tgtcaattgt gccttaacga      1800
     acacgggcag tctcggtgta gattcaaaaa ccactgctct gttggagact gcaaagatag      1860
     gcatcatttt cttctccatc ctccaaatcc agtagccact ttgtcgacga actgtaacat      1920
     acataactcg gatcaacatc cagtaatatt tcgtatggta cccatcaaac tccataacgg      1980
     taagcgtacc ctggatgtaa tcgcctttct tgatgaggga tcgtcatact ctttgattga      2040
     aagcagcgtt gccgatcaaa tgaagcttag tggctcatgg aggccaatac ttgtaaagtg      2100
     gacggcgggt atgagtcgtc tggaaagaga ttccagatgc gtcaatgtat cgatctcagc      2160
     taaaggatca aaggaaaagc tgttgcttcg caacgttcac acggttcagc aactgcagtt      2220
     accggagcag aaaatcaagt tcgctgaaat tatggctcgc ttcaaacatc ttagtgggct      2280
     accagttgcc gattaccaga acggccctcc aagaattctc atcggtctaa aacacctcca      2340
     tgtctacgca cctctcgagt cccgcgtcgg caaacctggt gagccaattg cggttcgaac      2400
     aaggctcggt tggacaattt atgggccaca aggaaacgct gaagagtcga ttggttttgc      2460
     tggtcatcat acatctggtg agttgtccga tcaggcatta catgaactgc ttcgaaacca      2520
     ttttgcatta gaagagtctg gcgtcacagt tactgtcctt cccgaatcag ctgaagatcg      2580
     cagagcccga gaattgctgg agaaaactac tgttcgtgta ggtgatcgat ttgaatctgg      2640
     ccttctatgg aaggacgata accctaaact accggatagt ttcccgatgg cgcttaaacg      2700
     aatgaagaat ctggaacgca aattagaaaa taacccggaa ctgcgtgaaa atgtagaaag      2760
     gcaaatcgat gattatcaac gtaaaggata cgctcacgtc gctaccccta aggaattagc      2820
     gcaggctgaa ccagggcgca tttggtatct tcctctaagc gtggtccagc acccaaagaa      2880
     gcctggaaaa attcgtttag tgtgggacgc agcagcgtcc cccgaaggaa agtcactgaa      2940
     cagtgaattg ctaaaaggac ccgattttct caccaatcta cctgcggtac taagcccatt      3000
     tagagagcga ccaattgcct ttggaggcga tataatggag atgtaccacc aggtgctgat      3060
     caagcctaac gataaatccg cccagagatt tttgttccgt ccaaatggtt cggcatctcc      3120
     agtgattttc accatggatg tggcgacatt cggttcgact tgctcaccaa gtacggccca      3180
     gtacgtcaaa aactacaatg cgaagagtta tgctgagcgg tttcccgatg cggtggaggc      3240
     gattatcaaa aaacattatg tggatgatta ttttgattcc accgatacgg ccgaggaagc      3300
     aattacacga gctcaagaag tagcatttat tcatgctaaa gcgggattca aaatacggaa      3360
     ttgggtttcc aacaacgtcg aatttcaacg gtatttcggt gagaacggag acaaccaagt      3420
     aattcacttc aatagtgaca aaatcaccgg cactgaaaga gtgttgggaa tgtcttggga      3480
     cactgtgaac gatgtctttc tgttttctac caaatttcga agtgaccttg agccgttcat      3540
     gtccggagaa aggcaaccaa gcaaacgaaa tgctctaagc tgtataatga gccttttcga      3600
     cccactcggc ttgctggcgt tgtacattgt acatggcaaa atgatcatcc aaggtctctg      3660
     gcgaagtggg tgtttgtggg accacactat cgatgacgat tcaatgaaga agtggtctag      3720
     gtggatagca ctcttaccag aagtgcagtc catgagaatc ccccgatgtt atttttcctg      3780
     cgcaagccct tcggactacg aaaacctgca gctccacgtt ttcacggacg ctagtgagga      3840
     cgcatttggg tgtgtcgcat atttccgtgt ccttgttaat gggcaaccca ggtgtgcact      3900
     tgtatcagca aaatccaaag tggccccgtt gcagcactta tccatccctc gactggagct      3960
     gcaagcagcg gttttgggag ccaggctttc agcgtcagtg aaggacaacc actctgtgca      4020
     agtaaaacgt ctgttcctgt ggaccgattc tcgcacggta ctttcctgga tacgttccga      4080
     tcacaagagg tacaagcagt tcgttgcgta tcggatcggc gaaatattaa gcctcacaag      4140
     cattagcgac tggcgctggg tcccaacgaa aagcaacgta gctgatgttc tgaccaagtg      4200
     gggcaatgga ccgcctctag agtcagacgg aaaatgggtg aatggtcctg agtttcttta      4260
     ccgtccggag gaagaatggc ctcaaagcga aatgccggca ccgaatgtgg agcaggagct      4320
     gcgagcgtat tatctatttc acgaaatcag tttctcaagt tctgtaatag actccacccg      4380
     attttctcgc tggagcaggt tacttagatg tgttaattgc gtgtttcggt ttatctcgaa      4440
     ctgtcgaagg aagaaaaaag gactgccgat tgaaacaatt tccgtcccga cgaaactgag      4500
     aaaaatggta aaagtttcgg ttgcgtctgt cgaattgcca tttactagtg aagaatacca      4560
     aaacacagaa aattaccttt ggagaacgac gcagcaagat gagtttggtg atgaagttaa      4620
     aacgctcttg aagaatcgtc aactaccaca gcaaaagcag cactcaatcg accgaagcag      4680
     cgtgctatac aaattaactc ctttcatgga tgacgctgga gtaattcgga tggagggacg      4740
     aacggcacaa gcggacttca ttcccttcga gctacgatgc cccatagtac ttcccaaagg      4800
     acacgatatc accttcaagc ttcttcagca ctaccatcaa aggttcggcc atgcgaatcg      4860
     tgagacggtg gtgaacgaaa tcaggcaacg tttttacatt caaaatctcc gagcagctgt      4920
     atcgaatgtg atgaacaatt gttcgtggtg taaaatccac aaatgccggc caaaatttcc      4980
     cagaatggcc ccgttgccgg tgcagcgcct cacacctcaa ttacgtcctt ttagttttgt      5040
     cggcattgat tattttgggc cagtgactgt cgcgattgga cggcgttctg agaagaggtg      5100
     gatatgtctt ttcacatgct tagtgactag agcaatccac atggaggttg cgcacagtct      5160
     aagcagtcag tcgtgcatta tggccattcg acgatttagt tgtagaagag gtgccccgct      5220
     ggaatttttt ttcagataat ggcactaatt ttcaggcggc cagcaaggaa atcatccagg      5280
     atgtccgtaa aattgtccta gagtgcgccg aagtattcac cgatgcaaga acgcgatgga      5340
     attttaatcc gccatcagcg cctcatatgg gcggtacctg ggagcgccta gtcagatcag      5400
     caaaagaagc gttgaaggca ctccatgatg ggcgtaagct atctgacgaa attcttctca      5460
     ctgtattggc cgaggctgaa gatatggtaa attcaaggcc tcttacatac gtaccacaag      5520
     agtccgccga gattgaagcg ctcacgccga atcattttat tcgcggtttg cctgcgggag      5580
     aacgcaatgt tgtcaacact cctactagtt ccgctgaagc cttgagagac aactacaaaa      5640
     ggtcccagga attagcggat atgctatgga aaagatggtt gaaagaatac attcccacgg      5700
     tcaaccaacg tactaaatgg cacgaggaac aggaagcaat tagggaaggc gaattggtgt      5760
     acgtggcaga tgggaacaac cgtcgtactt ggattcgtgg gatggtggag aaggtgatcc      5820
     gaggtctcga tggcagagta aggcaagcaa tgataaaaac atcgaaagga tcatatcgac      5880
     gaccagtagc caagcttgcg gttatggaac tacgcagtaa atctagccag attccaggtt      5940
     ctggaccaga attacgggag ggggaga                                          5967
//
ID   BEL-919_AA-LTR repbase;    DNA;    INV; 459 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 26.08, Created)
DT   28-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-919_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-459
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-459
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4574-4574 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 459 BP; 154 A; 71 C; 88 G; 145 T; 1 other;
     tgttgccacc gctcgcttta cctgagaggc aatggacagg cctatcgccg gttgacaaat        60
     gtcacgatga cagcgataca gcttgagctg acgttttggg gacaagaaga aaattgatga       120
     agagtgttgg acacgttttt gtagcattga actaaattta attatttctc ttgaatttga       180
     taatttctct tgaactagta atcgaaatat aaaaatacgt gagtagaagg caaaacataa       240
     ttgaatttga aattattgaa attatttgta ttgtagatta aacttcaggg gaatcatcta       300
     attgttctgt cgaatcaaak aattataaga aaccattaat gtgagtagac taaacaacca       360
     ctaaatttgt atactaatgt tgttctaata aatatccaca gttttgagct gcgcgattaa       420
     tcgactgctg caaagattcg tttcttttcg accagaaca                              459
//
ID   BEL-91_AA-I repbase;    DNA;    INV; 5082 BP.
XX
AC   supercont1.289;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-91_AA_;
KW   BEL-91_AA-LTR; BEL-91_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5082
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.289; Positions 1207023 1201942.
XX
CC   'CCCAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2184..4292
FT                 /product="BEL-91_AA-I_2p"
FT                 /translation="MFRQIWVHPSDRRFQQVLWRTSQFQELQRYQLTTVTY
FT                 GTSCAPYLATRVLNQLAEDKGHRNPLRAKVVLKGCYMDDALSGEDDLETAI
FT                 ESSKQLTELLKLGGFNLRKWSTNDPRILAHVPDEVKELAPETEIDDSGTIK
FT                 TLGLLWSHVTDEFEFKIPSLPSLNKVPNVSKRVVASEMAQLFDPLGLVGSV
FT                 VMSAKMFIQKLWAIGILWDDELPENLREWWLRFRNEIPELSRLKVPRQVLA
FT                 NDHTSYALHCFCDASNHGYGACVYVVSTTGTGTYYSQLLIAKSRVAPLRGL
FT                 TTPKLELCAAVLGCQLLEQVRNTTNFAGSAMFWSDSSIVLHWIRTPPTVWK
FT                 VFVSNRRAEIQKLSMNDCWCHVPSKLNPADRLSRGISPSEILNDALWWHGP
FT                 DYLVQTVENWPEDIVSLSRDEQEVRDAEARPVVTFAVAQIDHSIIQRYSDL
FT                 GKLLRVVGYCFQFCRNSRSLPSCRKVGPLEPSEVDYSLKSLIRSVQRTEFP
FT                 EEIRYLSANPQRRLTNKDKKLQFKSFKSLNPFLDDVGLLRIGGRLTKLSAS
FT                 LDTRAPILLPAKHYLSWLIARSLHLRTLHGGPTLLLATIRQRFWPLRGRDL
FT                 ARKIVRQCVTCFRCVPKPTEQFMGPLPLVRITPARVFSNSGMDYYGPFSVR
FT                 PLVGRGANVTMYVAVFVCMVVKAVHLEVVSDLTSVACINAVKRFIARRGRV
FT                 VNL"
XX
SQ   Sequence 5082 BP; 1302 A; 1206 C; 1250 G; 1324 T; 0 other;
     attttttggt gccaaaaccc gggaccacgt tgcagaaagg tctcgaaggc agctattgtc        60
     gtcgttggct ggaccacgtg actgcattgt ttcgcctatt gttcctgagc atcgcagtga       120
     aatcggcctc ggagcggatc aatacatcgt ccctagcaac acacatgtta taattgtgta       180
     ttatcaactc atatatggcc aaaactagtc atatataagt ttataacatt caattataac       240
     atgtgtgttg ctcggggtcg atcccgcttt tatcatctcg gcactgcgat ctgcctggac       300
     tttggaccat ttacggtgtg tgcaagaacg acacggagtg atagagagcg gtaaagtaac       360
     cctaagtaat cgataccagg tgggtgaatc tttttcattc ttctacacgc aaaatgaaaa       420
     cgttgaaaac gcttttgcgg caccgagcca acattatgga ctctgccaag ttgattgaga       480
     aattcaacaa cgaatgtcag gaagcttaac atcatgtaga aaatgccgtt tctggtgacg       540
     attccgatga agaaacggaa ccgaccttgt ccgcgaagcg tttcagttcc aaaatctgta       600
     ttttggcctc aaagcctctc tcgtgagtaa gctgccagtc gacccgccat ccgggaactc       660
     agctgctaat cgtcctccgg cgcaaccaat gcattctgtg cggttgccgg aaatcaacat       720
     tccaaagttt tgtggaaatc cgtcgaaatg gatcgaattt cgggacattt ttcgttccat       780
     gatccattca agcaccaatc tctcgtcagt gccaaaaaaa tcactatctt aaggctgctc       840
     tgaaaggcga ggccgcccgc ataattgcga atttggaagt caattccgac aactatgcca       900
     ccgtatggaa atcggtttgt gagcgatatg aaaattccaa tctacttcgg aaacaccatt       960
     tcgcagctct ttccgcaatc agttctgtga aaagagcgac ttcgtcgtcg ttgtacgagc      1020
     ttgtcgatga gtttgatcat cacgtggcca ttttgaggaa gctggatacg gcagctgatt      1080
     tatgggacac tgtgctcgtc gaaacccacg ctgcaccgca aggcggttct gttaatgcac      1140
     cctgcgagga agtctttctg tccacagtgg ctaccaggat gaaggacatc aacggtaacg      1200
     cacactacgc ctgcggcgtt ctcgatagct gttctcaagc taatttcatt tctgaagctc      1260
     tggcgcgcaa gttggagttg aagcgtgatc gcatcagtgt cgatgtaagt ggtattgggc      1320
     aaggaattgt ccacattcgc tcaaaggtag tgattcgatt accttctcgg atgtctcgtt      1380
     ataccgcaaa tcacagtcac gcttccaagc aagcatatcg atatatccga ttggaatctc      1440
     cccaaaaacg tccctctcgc agatccaaga tttaacatca gttctggggc cgatattctc      1500
     gtcggtggag aacttttcta ttcgttcatg caatcacata ggatcagttt gcgtaccgga      1560
     ttcccgatac tccagaagac agttttcggg tacgttgttg ctggtcggct atccaatgta      1620
     ttacgcaagc cttcgatttg ggtagtaagc gctacaacta gtctcgatag taaattgcag      1680
     cgcttttggg aagtcgaaaa tttcgaagat cgtagagcga tgactccttt ggaagaagag      1740
     tgtgagaaac acttccgaag caccgtaacc agaacaagtg cttcatggtc cgtcttccga      1800
     tacgtgaaga aatgctggct atgttgggag aatccttcat ggtggcacaa cgtaggtttt      1860
     tggccattga gaggaagttt gctggaaaca gtgagttcaa gagtgaatat gtgaagatca      1920
     tggaggatta cgcagcacta ggccatatgg agttgagccc tcgtgtcgaa aatccccagt      1980
     tcatcctgcc acatcacgcc atatttcgcc ctgacagctc caccacaaag actcgcgtcg      2040
     tttttgacgc cacctgcaag ggaagttccc agttgtcgtt aaatgatgtg ttactcgtcg      2100
     gtcccgtcgt acaaacaccc cttctagcta tcgtgctcaa ttggcggatt cctcgttatg      2160
     ttttctaggc ggatgtagag aagatgttcc gccaaatttg ggtccatcct tctgaccgca      2220
     ggtttcagca agttctgtgg cggacaagcc aatttcagga actccagcga taccaactca      2280
     ccacggtaac atacggaacg tcctgcgcgc cctacctagc tactcgagtg ctaaaccaac      2340
     tggccgaaga caaagggcac cgaaatccgc ttagggcaaa ggttgttttg aaaggatgct      2400
     acatggacga cgctctatcc ggggaagacg acctggaaac cgctatagaa tcaagcaagc      2460
     agctgacaga gctcttgaag ttagggggct ttaatttgag aaaatggagt accaacgatc      2520
     ccaggattct ggctcacgtg ccagatgaag tgaaggagtt agcgccggaa acagaaattg      2580
     atgattccgg aaccattaaa acgttgggtt tgttgtggtc acatgttacc gatgaatttg      2640
     aattcaaaat tccatcgctg ccttcgttaa acaaggtacc aaatgtatca aagagagtgg      2700
     tagcatccga gatggcacag ttgtttgacc ccctcggatt agttggatcg gtagtgatga      2760
     gtgcaaaaat gtttattcag aaactgtggg cgattgggat tctttgggat gacgagcttc      2820
     ctgagaactt gcgagaatgg tggttgcgtt tccgtaatga aattccggaa ctttcaaggt      2880
     tgaaggttcc acgacaagtg cttgcaaacg atcacaccag ttacgcatta cattgcttct      2940
     gtgatgcatc caaccacggc tacggcgcgt gtgtgtacgt ggtgtcgacc actggaactg      3000
     gaacatacta cagccaatta ctaatcgcca aatctagagt tgcaccattg cgtggcctta      3060
     ctacacctaa actggaactt tgcgctgcgg tactagggtg tcaactgctg gagcaagtac      3120
     gaaacacaac aaatttcgcc ggttcggcga tgttctggtc ggattccagt atagttctgc      3180
     attggatccg tacgccgcca actgtgtgga aagtattcgt gtcgaacaga agagcggaaa      3240
     ttcaaaaact gtcgatgaat gactgctggt gtcatgttcc ctctaagttg aatccagcag      3300
     atcggttgtc gcgtggaatt tcgccttccg aaatactcaa tgatgcgtta tggtggcacg      3360
     gacctgatta cctcgtacag accgtggaga attggccaga agacatcgtt tctctctctc      3420
     gagatgaaca agaagttcgt gatgcagaag cacgtccagt agtcaccttc gcggtggccc      3480
     aaattgatca ctcaattatc caacgatatt ccgatctcgg taagctactt cgggtagtag      3540
     gttactgctt ccaattctgt cgaaattctc gaagtttgcc tagttgtcgc aaggttggtc      3600
     ctttggagcc ctcagaggta gattactcgc tgaaatcgct aattcgatcc gtccaacgaa      3660
     cagaatttcc tgaagaaatt cgttatctct ctgcaaatcc tcaacgacga ctcaccaaca      3720
     aggataagaa gctccagttt aagtcgttta agtcgctcaa tccctttctg gacgatgttg      3780
     gcctccttcg gataggagga cgcttaacaa agctatcagc ttctctggac actcgagcgc      3840
     ctatcctact tccggccaaa cattatcttt cttggctgat cgctcggtcg cttcacctaa      3900
     gaactctaca tgggggacca acactgcttc ttgcgactat tcgacaaaga ttttggccat      3960
     tgcgcgggcg cgatctagcc cggaaaatcg ttcgacaatg tgtgacctgc ttccgttgcg      4020
     tcccgaaacc aacagaacaa ttcatgggtc ctcttccatt ggtgcgcatt acgcccgcac      4080
     gagtgttttc gaatagtggc atggattatt acgggccatt cagtgttcgt ccgttagttg      4140
     ggagaggagc aaacgtaaca atgtacgtcg ccgtgttcgt ttgtatggtg gtgaaggcgg      4200
     tacacctcga agtcgtgagc gatctgacgt ccgtcgcgtg tatcaatgca gtgaaacggt      4260
     tcattgctcg tcgcggtcgc gtagtgaatt tgtagcgttc gtcggtgctg atcgagaact      4320
     gaaacagctt cgccgacaat acgttgaaca gttctctacc gaacaatgga atgggtattg      4380
     cctggagagt gggatagcgt tctattttat ccctcctcgg tctccccccc acggtggcct      4440
     gtgggaagcg ggggtaaaat cctttaaata ccatctgcgt agagtcctag gcagtcgatc      4500
     gtttacgttg gaggaattaa ctactactgt ggctcaaatt gaaaatatac taaattctcg      4560
     ccccctttct tcgttatcaa accatccaca agatctatcc agccttactc ccgaccattt      4620
     cctagtgggt gagcctttgt attcaatacc agaacccgac tacactggac agtccgttag      4680
     tcgtctaaac cgttaccaag agatgaagcc cagtatccag gacttctgga aacgctgggc      4740
     aaaagagtat gtcagcgagc ttcatcagcg ttccaagtgg caacgtgtac gtgccgaggt      4800
     gaaggtagga tcgctagtcc tgctgaaaca agagggtcta ccaccgttgg aatggaactt      4860
     aggccgcatt gtggcggtgt tgccaggatc tgacggtcat atacgggtcg tcgaagtccg      4920
     cacagccaag ggtacgtaca agcgagcaat aacggaggtt tatgtgctgc ctattgatga      4980
     gtcagccgtt gaaactcaag cattgaacaa aggtggagaa cccgtcggtt cgtcaaccta      5040
     ggacgtggat agttgaaaca accgtttcaa cggaggccgg cg                         5082
//
ID   BEL-91_AA-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   supercont1.289;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-91_AA_;
KW   BEL-91_AA-I; BEL-91_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-425
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.289; Positions 1201941 1201517.
XX
SQ   Sequence 425 BP; 131 A; 104 C; 62 G; 128 T; 0 other;
     tgttggatat gatttgaacc ttaacattta atactacaat ttaagaacac aatttataaa        60
     ccactacaca tccttaccta gtctatagta ccctcattac tattgtttaa tacatacaca       120
     atacacgaag aacaaccatt taaattgcac acacatgcat cgacactaag gagacaatta       180
     acgatgagca ataaaatcag tttgaattcg actattgcac agtacacacg ctgtattaca       240
     tctctcgcgt cggtgaaaga agattcccca cgattcgctt ctcgtcagtg tttttttctc       300
     tccagttcag tgcgctccag tcatctatcg tcccttccac tcccattcga acattttaac       360
     gctgcctaat ttttgaagat cgtcaaacgt gacaatttag tgcgcggtga atagtcgcgc       420
     catca                                                                   425
//
ID   BEL-920_AA-I repbase;    DNA;    INV; 5847 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-920_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5847
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5847
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5847 BP; 1602 A; 1523 C; 1239 G; 1483 T; 0 other;
     tctggtcctt cgaaccggat tggccgacga actccggtca tctggtaccc atatctttcg        60
     acgagctcgc tgtggatcat tcgaggagtt gctgtgtaac aaaatcattc aaggcattga       120
     attgcctcga gaaggtaatt atatttccaa aactcggtag tgagatccca tttgtgctgc       180
     gcggtgtatt tgattccaca gatcaatctc cacatcctgc accgtcgtga tgtccacgga       240
     acggcggatt aagaccctca aggcgcgtct gaagagcctg cagtcgtcct tcatattgat       300
     caagaacttc gtcgacgaat atgaagaaga ggtacactcc atggaagtcc cggtacgatt       360
     ggaaagcttg acgaagctgt ggacggatta ctgtgctgta cagtctgagc tggaaacgtc       420
     tgatgatgct ggcattgaac agtatttgaa ggaacgggct agctatgaat cgtcatacta       480
     caaggtgaaa gggtttctcc tctctgttaa taaaccagca ccctcatcgc cgacgcatgc       540
     tggttcgact tcttattctc caacgcaagc tccttcttca tctcatgttc gtctacctga       600
     tataaaactg cctacgttca gcggaaattt ggattattgg cttaatttcc atgatctgta       660
     tgtgtctttg gttcactctt cgtcagagct ctcaaacata cagaaatttt attatctgcg       720
     tgcttcccta tctggtgacg cccttaagtt ggttcaaacg atccctatca ctgcagctaa       780
     ttatcttgtg gcctggaatt tgctcgagga acacttccaa aacaagcctc gcttaaaata       840
     gtcctatttg aatgccctat tcgagttttc aacactcaag cgtgagtctg cggcagatct       900
     acattcgcta gtagaaaggt ttgaatccaa cgtgaaagtt ctccagcagt taggagagaa       960
     aactgaattt tgggacctta ttttgattcg aatgctaagc gttcgactcg atgctacaac      1020
     tcgtcgagac tgggaagagt attcttcgac taaggacgac gtcacattca aggatctcac      1080
     cagcttcatt cagcgtagag tatccgttct tcaaactctt caagggaaag gcgttgaaac      1140
     tccgccatca ccatcgtcgt tcaatcagcc taaaaggtct actacccaac gcccaactgc      1200
     atgccacagc gcctcccatg taattagcga tcgaaaatgt ctcgtttgct ccgaacacca      1260
     cccactttat atgtgcccca cattctcaaa aatggttgtc gaggataagg agaaggaaat      1320
     ccgtcgcctt cagttgtgta gaaactgtct acgcaaaggg catctagttc gggagtgccc      1380
     gtcatccagt tcttgccgta aatgtaagca tcgccaccac actcagcttt gtcacggaga      1440
     accttctaac gttacaaaca gcaatgctac accaacgccg aagtcatcag tagtcaattc      1500
     tccagaggaa cagcctcgaa catcagcatc agtgatcgtc aacgagatga ccacctacac      1560
     cgcatctgaa aggaagcaca caacagtgct actcgctacc gctgtagtac tcttcgtcga      1620
     tgacaacggt actgaacatg ccgttagggc actattggac tcaggcagtg agtgctgttt      1680
     tgtttcggaa agattcctgc aaactgtcaa cagcaccaga aaaagagttt ccattcccat      1740
     ctctggtatc ggccaatcga caatcaacgc taaattcacg gttctatctc aaatccgatc      1800
     aagagtctgt aactactcaa cgaccattga atgtttggtt ctgccaaaat taactatcga      1860
     tttaccctcc gcctccatcg acgttgctgc atggaacatc ccacctggaa tacaactcgc      1920
     ggatccaact ttccacacgc gcaatgcaat tgaccttgtt ctaggagcag atgtgttcta      1980
     cgacattttc aatgtatctg gtcggattca cattggtgat tctcttccgc ctcttatcaa      2040
     ctccactttc ggttgggtgg tttccggtag agccgctagt tccccacgaa taaaaaggcc      2100
     gctcatcgca aatgtagcca cgatagctga tttgtcgcaa atgatggaaa aattctgggc      2160
     gctcgaagaa aaggaatctt catcgtgcca ctctatcgaa gaagcagcct gcgaatcgca      2220
     ctttgtgaaa actgtatcac gcgataacca tgggcgatac atcgtacgcc ttccagtaaa      2280
     aaatgatgtc ctagctttgc ttggcgacaa ccgtcgcacc gctgtacgaa gatttcgaat      2340
     gatcaaacaa cgcatacatc acaaccctga gctctgtcag cagtacatcg attttatgaa      2400
     tgagtacagt gccctaggac atatgcaaaa ggtagatgat tacgaaacac cccctaatcc      2460
     atgctaccat ttgccgcacc atgccgttct ccgagaagaa agcacgacca ccaaagttcg      2520
     cgtcgttttt gatgcatcgt gtaaaaccag tcgagggcca tctctaaatg acgctctcat      2580
     ggtgggccca attgtccaag aggaactgag gtccattatc atgcgtgcta gaactcatcc      2640
     aattatgctg attgctgata taaaacagat gtttcgtcag atcctggttg acgaaaagga      2700
     cactcccttg caacgaattg tatggcgaac tactcctgat ctacctctag acacgtacga      2760
     gctcaaaaca gttacctacg gaactgcatg cgcaccgttt ttggccacta gagtgctgca      2820
     caagctggct gacgacgaac acgaaaattt cccaatggct accgaagtac tgcgaaagga      2880
     tttctacgta gatgaccttt tttctggagc agacagcgtg gaagaagcga ttgaactacg      2940
     agaacagctc gatacactgc tttccaaggg aggatttgtt ctacgaaaat gggcttcaaa      3000
     tattccagca gttctccatg gtgtttcacc tgataatcga gcacttcaat cgtctgttga      3060
     tttcgatcct gatcagtgca taaaaacgct tggtttgtat tgggaacctt ctaccgacta      3120
     cctccgctat cgaatcagct tcccttccac cacgacagaa gatggtatta ccaaacgatc      3180
     cgttctctcc aaaattgcac gactcttcga tccaattgga ctagtaggtc cagtagttac      3240
     atcagctaaa ctgttcatgc aagaactttg gttgctcaaa cacgaaaacg gtgagtcctg      3300
     gggctgggat gaggaactac ctggaacagt caaggagcgt tggctggtct actgtgagca      3360
     actacctcgg ctaaatgaat tgcggataga gcggtgggtt ctctgcccaa caccgtcctc      3420
     gattcaactc cacttttttt cggacgcctc aaaacttgca tacggagctt gctgttatat      3480
     ccgttccgct aacagcactg ctactgtcaa ggtcgccttg ttgacagcta ggtccagagt      3540
     tgcacctata aagtaacaaa gcataccccg gctggagttg tgtggagctc ttctggcaac      3600
     tgaacttttt caaaaggttt ccacctcctt gaagcgcttc gacgaagtct acttttgggt      3660
     cgactcaaca attgtcctct gctggttgaa ggcaacacct accacatgga caacctttgt      3720
     cgccaaccgc gtttcaaaaa tccaacaagc gacacaacat ggtatatgga atcacgtttc      3780
     cggccaactc aacccagcgg actgtatttc ccgaggtacc gaagcagaat ccatactcaa      3840
     cgacgaattg tggtggcgtg gacctccgtg gctacatctc gaaccttcgt catggcctaa      3900
     gcaatctgtt ccaaatatat taactgaaac tgaactccct gaaactcatg aacagccggt      3960
     ttcagtctct gcaacaacta tagagtcctc cttcgtcgac aatttagtgg caaagttctc      4020
     caattaccat aaacttctgc gtgttgtcgc atattgtcgt cggttcctac gaaagtgcaa      4080
     gccatcttcg ttgaccagtc aaccctttct gagttcaacc gaaatccaag aagccgaagc      4140
     tgtcataatt cgactggttc agcagcagtt ctacaaggaa gaatggaagg cattagaaaa      4200
     atcacgacca atttcgtcca aatcaaaact gcgatggttt cacccttttc tttccaatga      4260
     tctgttgatg agaatcggag gccgcataaa tcaagcttcc caacctttcg acagtaaaca      4320
     ccaaatcatt ttgcctgcca aacatgccct gtcatccctc ttgcttcgta ctctacatca      4380
     aaagcaccta catgcagcgc cccagctcct gctgaatatc ctacgcctgc gatactggat      4440
     cgcaggggcc agaaatctgg caaaatacat cgtccacaac tgcgtaatct gcactagagc      4500
     ccgtccgaaa ttgcttcagc agtttatgtc agagctacct gcgtcacgag ttacagcgag      4560
     cagacccttt tctaaaacag gcatagacta ctggggtcca atttctctac agccaccaca      4620
     tcgccgcgcc ggccctagaa aagcatttgt ggcggtgttc gtatgctttt caactcgagc      4680
     agttcacctg gagttggtgg tcgatttgac tacagcgaag tttctgcagg cactgagacg      4740
     cttcgtgtca cggcggggac tctgcaatga aatctactcc gataatggta gaaactttct      4800
     tggtgcagct aacgagctgc gtaagctgat tcaaagcaag gagcaccaca acgcaattgc      4860
     caacgaatgc gcctccaaca atattcgctg gcaattcaac cccccaaaag catcgaactt      4920
     tgggggccta tgggaggcag caatttattc cgcacaaaag cacttcgtac gggtccttgg      4980
     tacaagcaca ctggcccacg acgacatgga gacgcttttg tcacaaatcg agtgctgctt      5040
     gaactcacgc cctattacac ctctaactga cgatccaaca gactacgaag tgcttactcc      5100
     gggccacttt ttgatcgggt cctctctcaa ggctattccg gacatcgatg tctctgacgt      5160
     tccctgcaat cgactaacta aatggcagca agtccagaaa atgtttcaaa ctatctggag      5220
     aagatggcat ttggaatatt taaccactct gcagccaaga acgaagtggt taaatccccc      5280
     aatcgcacta caaagaggtc agctagttct gctaatggac gaaaaatcac cacctatggc      5340
     ctggcctaca gctaggattg aggaattaca ccctggagcc gacgggaata ctcgtgtggt      5400
     tactctccga accgcacaag gatgctacac tcgtcccgtc aacaagattt gtttactccc      5460
     gatccgacca tccgacgaaa aaacaccaga gcaagaaagt cccattcatc aggaagcgga      5520
     ataacagcta tcgagtcatc acttcaacca tttccgtcac caaagcgttc ctgcttcatc      5580
     cggagcaacc taaaacgaaa catacaaggc cctaatgaat tagggagaag gtaagcacct      5640
     ctccaataat ttaatctcat aaaaaaccct ctaccgggtc ttatgttttc catgaaattt      5700
     tcctgctgat tcatcgttcg accgtacgag aatttgtaaa caaaaatcat cgaggaacga      5760
     aacgtcatcc atcaatgtca accaccacgg gagttgtgtg caacgatcga ctgtcatcag      5820
     aaatggtgat ttctgaaggg gcctgga                                          5847
//
ID   BEL-920_AA-LTR repbase;    DNA;    INV; 541 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-920_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-541
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-541
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4575-4575 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 541 BP; 189 A; 107 C; 102 G; 143 T; 0 other;
     tgttcgtata cgaatatagt ggctccgcct atccgtcgaa tcaacaataa tccgatccga        60
     atgtcccttg ttcatcgatg gcaacgagct ttcgccgcaa cgagcagtcg tctaacgatc       120
     tgtagctttt aacgaaacaa ctacaagggt acgttctcgt taataaactt cctcttcctc       180
     ccgctggagg gaacccgatg gagtataaaa gcacataccc acatgtgaac gcatcctcgt       240
     tttacttcaa gtactgccct gaagagtcgg aaattgcgtt aacccttact gtaccagagt       300
     gaaccaaata gtatattagc tagaaaataa gaaagtgaat tgattaaaat aaagtgaact       360
     agaaaattaa gcggaattta gttagaaata agtgtggatt gaaataaatt aaagtagtgt       420
     ataacctaaa acctaagtga actgtacgaa ctcaataagt ggactgtatg aactaaataa       480
     atgaacaaat taaaatcaaa gtgctgtgaa caatccgttg ctctctactg atatatcgac       540
     a                                                                       541
//
ID   BEL-921_AA-I repbase;    DNA;    INV; 6882 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-921_;
KW   BEL-921_AA-I; BEL-921_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6882
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6882
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4550-4550 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6882 BP; 1814 A; 1647 C; 1674 G; 1747 T; 0 other;
     ttatggtcct tcgagccgga tcctggaccc actaaggaaa ccagcatttc tcgcttacac        60
     tggatcaaaa cgctcgtttc ggacaaggtt ctatttcgcc atcgtgattc tgtactggat       120
     ggagtcacta ctaaggtcat tgaatgcaca actgccattg cactttggac aaggctttat       180
     cgctcgccaa ccggcgcagt gaaggactag aacgccatag cagtttcacc ggcttggcaa       240
     ggatagccat tttaggaact ggacatcaac tgtaatattg caagcacaac atcagtgaga       300
     ccttatcaag ctattcaaga tcagtcaagg ctgttttgga accaggatac gaccttcatt       360
     ggaaacacgg aaggaaatct ggacgttttt ctggtgcacg gattgcttct tcaaacgctg       420
     gactagcgca acgctttctt tcccaggtaa attaagttag aatagtgtat gtccagccga       480
     agcaaggatt tcaatttact aatgcaacca tttcgacctg tttcttcgga cctacgacct       540
     tcggatcaac ggcaagggga gccgttccat tgacgagcct ttgacatccc acccagattg       600
     atatccaacg aaactcatca acggaaacca atgcgaaacg agcgctgaag ggagtttcgc       660
     cagcttcatt gcatttgtgg agtggataca accatcttgt ggaacatcgg gacgagtttc       720
     ttacgttgtt gctgcccacc aggttactca ggattatcag cacgaagagg tggcgccatc       780
     acaagttttt ctcgggtgag tgagctttag tatactgccg aagctagacg cagaaaatac       840
     accattttaa atcaaatttt atcctcttcg gctttgatat tttcctgctg agccctgaat       900
     gctcgtttga gctacttaat agtgaaaatt tggatcctct tcgtatatcg gacttctccg       960
     ggatttgcac tgctgctggt ttctccaggt gagttgcagc agtatatgcc cggccgaagc      1020
     cgacatactc tcgatattac acctcaattc ctcctcttcg tcgacctctg ttcttgagcc      1080
     attgctgaat caaccgattg atgtgacgtc actagacttg cgtatgcttg gaatatcatt      1140
     atcgttttct actggggcat cgtaatccat tctatcgggt aaatttgcac agtatatgcc      1200
     tagccgaagc caggcccaca ctctgcctac tacaccgatt tctcccctct tcaaatccac      1260
     accattttgc tgagccatta ctaatcgtga gatgaactga cgttgcatat gcgggtattt      1320
     cgttggagta tcactgcttg gagtatcact gctcgtttct ccgggtaatt taatgcagta      1380
     tatgcctagc cgaggctagg tctacccttt gcatactaca ccacgtctct ttatcttcct      1440
     gctccggttt gtacggcacg agggaatgac aaccatgaaa cctgacgtca agaaatctcc      1500
     aactatgagg gcgttgactg ccaggttaaa ggaaatccag ttatccttca gcgacatcga      1560
     ccggttcgta caactgttta aagaaactac ctcttctacc gaagttgaga tccgccttac      1620
     taagttggat gaactgtggg agagtttcag cgaggccttg gtcgacatct tttcccacga      1680
     tgactacaac ccggacagtg cgtcactgga gaaggaacgt atggagttca gtgatcgtta      1740
     ttaccagctg aagacgtttt tggcggacaa gctcaaggaa atgcagaagc cacaggagct      1800
     cgaggcttcg tttcgaggca gtgatgggtc gacccatgga ggcatggatc acgtgcgtct      1860
     gccgcagata acgctacaat cgttcaatgg gaacatcgac gaatggttga gctttcggga      1920
     cctcttcacg tcgctcatcc attggaagac ggaactaccc gaagtggaaa agttccacta      1980
     tctgaagggt tgcctgcaag gagaaccgag agcattgata gatcctcttc caataacgaa      2040
     ggccaactat caggtggcct gggatctgct gttgaagcgg tacaacaaca gcagacagct      2100
     gaagaagcgg caggtgcaag ccctcttcga gctgccttcc ttatccaagg aatccggaac      2160
     cgagttacac gttcttctcg aaagctttga gagaattgtg aagactctcg atcaagttat      2220
     ccaaccgatc gactacaagg atctgctctt ggtacacatc ctcacggctc gtttggatcc      2280
     agttactcgg agggggtggg aagaggtctc atccaccaag cagcaggata cactcgagga      2340
     tttacgggaa tttttgcagc gtaggatcca ggttttggac tgcttaccat cgaagtcgtc      2400
     caatataaag gggattgtat cggtgcagca acagacaaga ccaaaaacgc aacagttgaa      2460
     aagcagctat agctccacgc aatcttcgcg agcgacctgt attgtctgtt catcggatca      2520
     tttcctctat cattgcaagg agtttcaacg gttgacagtc gccgatagag acaacgtttt      2580
     gaaatcgaat ggactctgtc gtaactgttt cagatcgggg catctggcca gggattgccc      2640
     gtccaagtac agctgcaaaa attgtaaagg gcgtcaccac acactagtgt gtttcaagtt      2700
     ggaaagagag aaggagagca aggttgcggc agttgctggg ggtaataagc cgtcgactac      2760
     tcaggatcaa cgggattcat ccaattcatc ttccatccaa gtggctaatg tggcatcctc      2820
     ggagtctgta gtgtccgcta cgactcacca gccttcggtt caggttttgt tggctacagc      2880
     agtcgttgtt atcgaggacg ataatggtaa ccgtcttcct gctcgtgctc ttttggattc      2940
     tgggtcggag tccaatttca tcacggagag attgagtcag caaatgaagg ttatccggaa      3000
     tcgagttgat atttctgttc ttgggatcgg ccaaacagga actaaggtaa aacataggac      3060
     acgtgcaatg gttcgatcaa ggttgtcctc gtttgcacgc gaaatggatt ttctcatcct      3120
     cccgaaggta acggtgaacc ttccaaccac cactacaaga acggaaaatt ggtcgtttcc      3180
     aagtggagtt caactagccg acccagcatt cttcgaacgt aacggtgtgg acctggtact      3240
     cggaatagaa cacttttttg atttcttcca aaccggtcag aggatttcct tgggcgtagg      3300
     gaatccaact ctcaacgagt ctgttttcgg atggatagtg agtggcggta tttcggcatc      3360
     gaatcattca ctacagatca gctgcaatgc atcaacactg gacgatttgg atgcactgat      3420
     ctcacggttt tggctttgcg aggaaatcga atcaggaaag gcgctatctt tggaagaaaa      3480
     gcgttgcgaa gacaattttc gctcgacagt tcaacgggaa accgacggtc ggtataccgt      3540
     ctcactaccg aagcaagaag aggccattag tcggttgggc gaatcaaggg atatcgcata      3600
     tcggcgtcta caaggaacgg aacgacggct ggctcaaaat caggtgctac ggaaacaata      3660
     tcacgacttc atggaggaat acgtcaacct tgggcacatg cgattggtgg aaggaacaga      3720
     aacggaggcg gtcaaacggt gctacctgcc gcaccatccg gtgataaaag aggcaagcac      3780
     cactaccaag gtacgggtgg tgtttgatgc gtcatgtaaa acggcgaccg gtgtttccct      3840
     caacgatgta ctgctagcag ggccaacagt tcaggaagac ctccgatcaa tcattctacg      3900
     tagccgaacg aagcagatca tgctcgtctc agacgtagaa aaaatgtttc gacaaattta      3960
     tgttgaccca aaggatcgtc ctctgcagtg cattttgtgg cggttttcac caagtgacgt      4020
     tgctcacact tacgagctta atacggtaac gtatggcacc aaaccagcac catatctggc      4080
     caccaaaacg ctgcaacaac tggctttaga tgaggagaag acgtttccgc tcgcagctaa      4140
     ggccgttata gatgacacat acatggatga cgtcatcact ggcgccgacg aggtagagac      4200
     agcaatcgaa atgcaaaggc aattgtctgc gatgtcatca ggtggtggat ttcgattacg      4260
     taaatgggcg tcaaattgtc ctaccgtatt ggaaggtgtg ccagaagaag atcgcgccat      4320
     tcggacaccg gaggggatcg aattggaccc agatccctca atcaaaacat tgggattgac      4380
     ctggatgcct ggtacggaca ctttgagatt ccagttcaca attccaactt tagatcctgg      4440
     caaaccactc accaaacgtt gcgtcctttc tgtgatcgcg actttgttcg accccttggg      4500
     gctcctggga gcagctataa cgtcggcaaa aatcttcatg cagctactgt ggactctcca      4560
     tgacggcgaa aatagacggc ttggctggga tcaaccacta ccttcgacgg tgggtgagtc      4620
     ttggaagagg ctttacgagc aacttccgtt gctcaatcaa attcggattg atcgttgtgt      4680
     catcattccg aaggccgttt cattggaact ccattgcttc tcagacgctt ccgaaaaggc      4740
     ctacggagct tgcctgtacg cgaggagcct gaatgctgca ggggaagtga agatacgctt      4800
     attaacttcc agatcaagag ttgcaccgtt gaaatgtcaa acaatcccaa ggttggagct      4860
     ttgtggagct gttttagctg cgctactctt tgaaaaggtc aagcaatcga ttcgattcac      4920
     gggaaaatcg tttttctgga cggattcaac ttgcgtccta cgttggatcg aggcagttcc      4980
     aactacatgg accactttcg ttgccaatcg agtggctaaa atacagtcca ttaccgaata      5040
     ttctcggtgg aatcacgttc caggggtaga aaatccggca gatcttatct ctagaggaat      5100
     caccccggaa gacatcgtag agaaccaatt ttggtggaga ggaccacctt ggttggagga      5160
     agaggaagaa aaatggccat gcttatcgga agtattacca cctggtccag aagaggatcg      5220
     aaaacggcgt acagttgtcg ccgctgcatc ttcgagcatc tccgagttca accaatcgta      5280
     tttcagcaag ttctcgtcgt acaccgatct tgttcgccgc actgcatatt ggcttcgctt      5340
     tatgaagatt ctacgaactc cgaagaagga aaggaagagt ttcacgttct tatcgacggc      5400
     cgaactaagg gaagctgaaa atacattagt ccgtttggtg caaaaggagg ttttcgttac      5460
     ggaatggaag caattagcta gcagaaatcc gattctaaag ggttccccac tgcggtggtt      5520
     caatcctttt atagccgacg atcaactaat tcggttgggc ggccgacttc agcattcatt      5580
     ggagtccgag gaaaccaaac atccagcggt gcttccagct aggcaccagt tcactcgctt      5640
     gttactccgt cactatcacg aacgtttgat ccatgcgggc ccacaattgt tgttgagtgt      5700
     tattcgcctg cgattttggc ccttaggagg aagaagtgta gtaaaacaaa tcgtccacca      5760
     atgcctgaaa tgctatcggt cgaatcctag aaccgttcag caactgatgg gaaatctacc      5820
     tgcgtctcga gtaaccgttt cacgaccgtt tcttcgaaca ggcgtagatt actttggacc      5880
     attgtacgta cgacctggtc caagacgtcc ggtggttaag gcgtatgtag cgatttttat      5940
     atgcatgacc acgaaagcag tacatatgga gctcgtctcc gatctgtcaa ctgaccggtt      6000
     ccttcaagct ctgcgacgtt ttatctctag gagaggtcgg tgtacggata tattctccga      6060
     taacggtaca aattttgtcg gcgcccgaaa taagttgcaa gaacttctga gaatcctcaa      6120
     ggatagtagt catcacgaaa ctgtatcgag tgagttggca aaggaaggaa ttcaatggca      6180
     cttcaatcca ccaagcgcgc cacacttcgg cggattgtgg gaagccgctg tacggtctgc      6240
     caagaatcac ctcatcaagg ttttaggaga gactccagca accccagaag atctctgcac      6300
     gctgctagta caagttgaag cttgccttaa cagccgccca ctcactcccc tctccaatga      6360
     tccaaatgat cttcagccgt taaccccagc ccatttccta atcggagaat ccttgcatgc      6420
     acttcctgag accgatttga ccatcgttcc aactaatcgg ctcaatatgc tgcagctgat      6480
     gcaacgaaga ttgcaagact tttggaagcg gtggaaaagg gaatatttat gtcagcttca      6540
     aggccgagca aagcggtgga aacctgctat ttccattgag gttggaacac ttgtcgtgat      6600
     tcacgatgat aatttgcctc ctttaaaatg gaaattagga cgaattgtca aggtgcatcc      6660
     tggagacgat ggaaccgtta gagtggtcac cctaaaaacc gccacaggcc tactcactcg      6720
     cccagtcgag aaaatttgca tactgccagt tccagcagat gatagcatcg aggaaccgtc      6780
     tgattcagca acccaaaact agtgatcacc ttcccttccc tattccccga agaggatttt      6840
     ttcttattta cagaaactta gtactttctg ggtgggtgag aa                         6882
//
ID   BEL-921_AA-LTR repbase;    DNA;    INV; 669 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-921_AA-I;
KW   BEL-921_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-669
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-669
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4576-4576 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 669 BP; 175 A; 150 C; 164 G; 180 T; 0 other;
     tgttcgcacc aggctcacat cagacacctc aaccctagca atgcagaact atcgccgttg        60
     tgctgctttc actttcatcg acggatatca acaaaccacc aacaccatgt ttgagctaca       120
     gatatcgatc ggggtacaca gctacctatc atctatctag atgattgccc ttatcgccgt       180
     cgtctcggcg atggcttacc atgtgtggga atattggagg atcgctgctg tcggagttca       240
     cccgaacgat atacaaccat aggtcgatga ggaacgaacc gtcgtttgag gtctgctgtg       300
     cgtctagaca gagaatcttc gttagagtcg aaagggtcgt cgtccagaac aggagctact       360
     cctgcgcgcg cgaattgcgt tttaatgtgt ttagattaag ttgaattagt taagaataaa       420
     gtagatgttg tgcccgtttc aataaagttg agtttgtccg cgaataaatg ttttaagtcc       480
     aaaatgtgtg tttagtgtaa gaacgaagga aaggagaaat acgcctggaa agtgctgcta       540
     aaaggagatg atccattgtc tgctggaagt gccctacccg ctctcacccc tcgtcgatgt       600
     tcggctggct gtcctccatc gcatagtggt tatcgaagca gaattaaggt atttggacag       660
     atccgttca                                                               669
//
ID   BEL-922_AA-I repbase;    DNA;    INV; 6133 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-922_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6133
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6133
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6133 BP; 1769 A; 1433 C; 1535 G; 1396 T; 0 other;
     agcttaaaga atctgctttg cagagtacgt gaacggaagg atgctggaga ccgacaaaaa        60
     cgactgtaaa gtctgccggc gatcgaataa cctggacaac atggtattct gtccaagatg       120
     tgaagaatgg taccattatc aatgtgttgg agtcaatgag tccgtagcgg aacgaagctg       180
     ggtgtgtgga aattgttcga ttctgccgcc cattgatcca cccggacaaa ccagtactcc       240
     agtgagtagt gtcccagctg tgacatctgc ctctggtccc ccatacaatg cgcccagtgc       300
     ccacccggct tttctctgcc aggaacttcg tctactgtgc ataacaaagg agatcacaga       360
     cagtcgatct taactgaaca ggccagggca agtctccagt ggatccagga acagagggaa       420
     aacttggaga gagagatgga ggagaaccat aggcaggaaa tggaacggaa acgactggaa       480
     ttgaggaagc ttgcgaacaa agcgatgcta gacattgttg acagtacaaa tgatggaata       540
     gcgaacagtt tgaatggaca ggcagcaacg gcgggtatca acaaggttta ggattggatg       600
     caacaggtag ttggcgagat gaagaacctc tcaatcgctc aaccgagcgg aagggcagag       660
     gcgacaacga ccagcgtacc tgtgtatgac atcagttccg ttccgacgac cgcaggtgcc       720
     aatttgaacg tgtttgattc aaattcgttg tcaactatgc atagcacaca aggtaggcaa       780
     gatatcgttc cccccgtcac aatttcctct gcacatctca gttcagtcgt gccaccacaa       840
     ttattctcaa gcaatatagg tggcctcccg caaagcacag ttccctctct ttcgcaagcg       900
     acaatggcat cactaccgtt aggtggtcaa ttggaagtcg atcgctacca acagttggga       960
     gcagtcccaa gaagtcgggt caatccgatg cctacaatat cgggatgggg ggccaatctg      1020
     caaacaaata tagtcagtgc gtgttcgacg atgccagtag tcggaatccc ttctacccac      1080
     tcaggatttc catcgaattc tgtgcgatct ataccccttc ctacttccat ggtggggttg      1140
     gagacaagct gtggtgtgac taatagtggg catatcccac agcaaatggg gaatgctgct      1200
     aacgtcggtt tgaacggtgg attcatgttt ggacaaacgg ccgtgccaag aattccacag      1260
     ctcaacgacc cggtaggcca gttccaaatt gttccaacac aacatcagtt gatggcaaga      1320
     caagtgatgc ctaaggatct tcccctcttt agaggcgacc cggaagattg gccgcttttc      1380
     tacagcgcgt acgttaattc aacagcagcg tgtggatact cagacgttga gaatttggca      1440
     cgactgcaaa aggcgttgca aggcagagct tttgatgcgg ttaagagccg acttttactt      1500
     cctgcctgcg tgccccaagt tttgaacacg ctctatatgc tcttcggacg ccccgagcta      1560
     attattcaaa cgctactgaa taagggtcgt gaagtaccgg caccaaaacc ggaacgattg      1620
     gacaccttga tcaccttcgg aatgactgtt caaaaccttt gcgaccatct tgaggcagct      1680
     ggacagctag cacatctatg taacccgatc cttctgcaag agttagtgga gaagattcca      1740
     gctcaacaac gcttagattg ggcactatat aaacgacaat tcgtagcggt cgatcttcgt      1800
     acgttcgcgg cctacatgtc gacactggtc gccgcagctt cagacgttac gatcacgaca      1860
     gacaccaaac aagtaagatc cggcaaaaat gatcgtataa aagagaagaa ttttctgaat      1920
     acccactcgg cagtcgagcc gctgaagaaa gaatcaaagg agactctctc cgaggtgctt      1980
     tgtctggcat gtaacggggc cggccataag gtcaaagatt gtgccgtctt caagaggtgg      2040
     gatcctgaaa ggcgatggaa gacggtgcaa gacaaccatc tgtgtcggac gtgtttaggg      2100
     aaacatggac gacgcccatg taagtcgcaa gctaattgtg gatttgaggg ttgtcaacaa      2160
     cgtcatcacc agttgctaca ttcccaagca cagaaacaac cgcttcccgg gcagaatatt      2220
     gggaaaccaa cggaaggtgt gaatgcccac catacagctg aaaaatcgac gttgttccgg      2280
     attattccag tacaactctt ctggaatggt aaatctatcg agactttcgc tttcttagat      2340
     gatggctcat caatgacttt gatcgaacag tcggttgctg actgcttagg aatagatgac      2400
     ggcgagccgc ttcctctgtg tttgacatgg acgagcaacg tcaacaaaca ggtaccgaat      2460
     tccaaacgaa tctcccttag tatctctggc cctgggcaaa gcgaacaata ctcgttgatt      2520
     gataccagaa cggttcccaa tctgaagctt ccaaagcaaa ccttaaagta cgaagaattg      2580
     gcgaaacaat atgcacattt gcgcggacta ccgattaata gctacgactc agtagtgcca      2640
     ggtatcctta tagggtcgaa caatgcaagt ttgatcgcaa cgctgaagtt gcgggagggt      2700
     caacttggcg acccactggc agcaaaaact cgactagggt ggtctatcta cggctacaca      2760
     gctgacaaca gcaaggaggg gaacttcagc ttccacattt gcgagtgcca agcagaacac      2820
     acatcaaatc aagaactgcg cgatttggtg aaacatcatt tcacactaga aagtgtaggc      2880
     gtatctgtag ataagggccc agaatccgaa gaagataagc gcgcttatgc tatcttgaag      2940
     gaaacaacaa aacggactcc tcaaggcttt gagacaggtc tattatggcg aaccgatatc      3000
     ataaagttcc caaatagtta ccccatggcg atgcggcggc tggagtgctt cgaacggaag      3060
     atgaataagg atccagagat gcgcatgagt gtgcaacacc agatcagcga gtacttaatg      3120
     aacagttata tccacgaagc tacaccagag gaattggaag gcatcgaccc agagaaaata      3180
     tggtacagtg ggattctgcc actaggagcc gtaagacacc caaagaaacc cggcaaaatt      3240
     agacttgtct gggatgctgc agcaaaagta gggggcgtgt cactcaactc tatgcttatg      3300
     aaaggcactg atttgttggt accacttgca gcagtactct gtggtttccg tcagtatttg      3360
     gtagcagttt cgggagacat caaacagatg tttcatcagt ttagaattcg acaacaagat      3420
     gcacatgccc agcgattcct gtatcgtgac catccgcttc aacaggtcaa gacgtttgta      3480
     atggacgtag gtagctttgg tgccacttgt tcgccctgcc aagcacaatt tataaaaaat      3540
     ctcaacgccg aagaatatca aactgaattc cctcaggcag ccgaagcgat tataaaaaaa      3600
     cattatgtgg acgactacct tgatagtttt gacacggagg aggaagcaat caaggtagca      3660
     ctggaggtaa gggaagttca cgcccgtggt gggttcgaaa ttcggaattg gcattcaaac      3720
     tctactaagc ttttggaacg ggtcgatgag ccaaagcggc agcaactcaa agcggttaat      3780
     attgacgcag agggcgaagc ggagagaatt cttggtcttc tttggctgcc tgaagaagac      3840
     cttctcgctt tctctgccga tattcagttg gacggaatca cgcctaccaa gcgaaacatc      3900
     ttgcgatgtg tgatgagtct attcgactcc caaggcattt tgtcgcacat aacagtacag      3960
     ggacgaatga ttatccaaga tacatggcga agccagatta gttgggatga agaagtgaac      4020
     gaactgattc gtagtcgctg gcgaaaatgg attgtgctcc tagagaacgt aagcaaaatc      4080
     cgactttccc gagcctactt tccgggttgc tcctctgctg atattggttc agtggacctg      4140
     cacatcttca cggacgcaag tgaagaagca tatgctgcgg cagcttattt tcgtgtggta      4200
     ataaacggaa aggttttctg caccctggtc atggccaagg caaaggtagc gccactaaaa      4260
     gctctgtcgg ttccgcgcct ggagctaatg ggagccctct tgggagcacg actggctaaa      4320
     acagtcagcg aatatcatac aattcccatt cgacgtcgag ttctatggac agattcacta      4380
     gcaactttag catggattca gtcgcaacac tgccgatttc gacaatttgt tgcatttaga      4440
     gtgggagaga tactaagtaa gacggaggct acagaatgga gatgggttcc cacacagcat      4500
     aacgtggcag acgaggctac taagtgggga aaaggacctt ctacagacgt caaatcacgc      4560
     tggtatcaag gaccaaattt cttatatctg tcggaatcgg aatggccgaa aatatcgtca      4620
     gctacaccag tcgcaacagt cgaggagcta cgaccgagtt tagttcttca tgaatcaatc      4680
     gttacgaata caatccgttg ggaaaatttc tccaaatggg aacgtcttct gagggcggtt      4740
     gcgtatgcac atcgctttgc agcaaactgc cgtctaatgg ctgcaaggcg gcaaataact      4800
     acgggaggct tgacgaaaga agagctacaa acagcagaaa atagtatctg gcgtatggtg      4860
     cagtctgcga gctacccaga tgagatcgca gccctgaaac aaggaaacgg aaactccaat      4920
     aaacgtatcg agaaaacaag tcctatctac aagctttcgc catttatcga tgagctaggc      4980
     gtaatgcgca tggatagccg aatagggtca gtcccatatg tggcttatga ctacaaattt      5040
     ccaataattt tacctcgcaa caatcccatg acattgcttc tcataaactg gtaccaccgc      5100
     cgctatctac acgccaatca cgaaacggtt cacaatgaag ttcgtcaacg cttccatgtg      5160
     tcaaacctcc gcacagtgat tcgacaggtc ataagaaatt gccaatattg caaaattacc      5220
     agagtagaac cgttgacccc taggatggct ccgctaccaa gtggattgcc ttgttcacgt      5280
     gcctgacggt tagagcaatc cacctggaaa tagtccattc attatccacg gaatcgtgca      5340
     aaatggccgt tggtcggttc atagcccgac gtggatcacc gatcgaaatt tattccgaca      5400
     atggcacaaa ttttcaaggt gccagtcggg aacttcggga agaaatcgat gctatcggaa      5460
     agcaactggg ggagaccttt acaaatacaa acaccaagtg gatttttaac ccaccttcgg      5520
     ccccccattt tggcggctca tgggagcgcc ttgtgaggtc agtcaaaacg gcaatgggat      5580
     cactatgctc cgataaaaat ccagatgagg agactttggg gaccgttatc gcagaagctg      5640
     aatcgttggt caactccagg ccattaacgt ttatcccgct agatgattcg gcacaggagg      5700
     ctctaacgcc aaaccacttc attctattga gttcaaatgg tgtcgttcaa ccccccaaga      5760
     tattagcaga tccgatgaaa gcgtctcgaa gcaattgggc cattaaccgc caactcgtcg      5820
     accaattttg gaagcgctgg attagggaat atctgcctac aattgccaga agaaccaaat      5880
     ggttcgacga acataaggaa gtgcaagtaa acgacttagt gctgatagtg aatgaaaaac      5940
     agcgaaatgg atggaccagg ggacgagtac tgtctgttat acgcggtcaa gatggacggg      6000
     tgcgtcaggc gaatgtgcag accacatgtg gagtcttccg tcgccctgta tcaaagctag      6060
     cagtactcca ggtgcgaaac gagagtaacg cagagctagc agcggaaccg gaagcgcgtt      6120
     acgggccggg gga                                                         6133
//
ID   BEL-922_AA-LTR repbase;    DNA;    INV; 547 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.08, Created)
DT   29-JAN-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-922_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-547
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-547
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4577-4577 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 547 BP; 179 A; 110 C; 109 G; 149 T; 0 other;
     tgttgccgac actggcagca ctgaaagcgt tcatgtcgaa tcagaaggta aaaccccccg        60
     atcaaactct gagcgcacta aaatgacact agcaggaaat gtcatagatc aagggatccc       120
     tgacggacaa acgtcattgt agtgaagatt tgtggagaca ttgttaatcc ttcgcatgtg       180
     ataagttaat tgcggatcgt aatatttcat ttcgaatgcc ttaaattgta ccccttgctt       240
     tgagcacaag tgtgttaaac tgatatctac cttactagct taacctgaaa ggttctgata       300
     gaattgttaa cccttaaact accagcggta aagagaatag tcgagcatac caaaccctat       360
     tgctctgaag caccgcgtaa aataagattt gttgggagat attgaaattt gaaaggacca       420
     gattgtaatt agtgtgagcg ttaagcgtaa gaacaatcta ataataaatt cttctctcag       480
     ctttaagaat tcggcacact aaatcatcgt gcggttctct aacgaagtcc gaaaaatcta       540
     cccaaca                                                                 547
//
ID   BEL-923_AA-I repbase;    DNA;    INV; 5654 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.08, Created)
DT   04-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-923_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5654
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5654
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (04-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5654 BP; 1497 A; 1302 C; 1500 G; 1355 T; 0 other;
     ttggtcctac ggaaccgaat ttgatccgga acacgcgtgt gaaaataatg ccgaatggac        60
     aaaagtgagc aatcgtttgc gaaaagataa tggccgccgc gccggtggta tgacgagttc       120
     gtgagcggaa aaaagaaaac gataagtgtg aagtgtgggt agacaaggag tgcgtgccgc       180
     cattttattt tggttggttc caaagagttg gaacacagcc attcccggaa gtagtcctgt       240
     tgcttcctcc atctagacgg atagttatcc tactgatctg tctattccat gtatcgcctt       300
     ttacgtggac attcagacac ggagaacgac gcgataatca agtctgagca ggaatctcct       360
     ttgtctacac cgaaacgtgc gaagggagga aaaatggcgg agctgaaggc actgatttcc       420
     aagcgtggtg cagtgaaagg caagatgtcg agaatccaca ctgcggttga tgctgccttg       480
     gtggacccgc ttgccatgtc catagcgcag ctacgtgttc acttcagaaa tgtggaaaaa       540
     tattacggtg aattcaacga agtacacgat gcagttatgc aatcagtgca cgataatcag       600
     atggaggcgc aggaagcaaa gctggttgag ttcgaggagc tgtacaatga ggtgcaggtt       660
     gccatcgaaa cgctgatgga agctcacgca ctaaatgcca atcgtgaacg tgccatggtt       720
     gcagctccag ggcaacccaa tgatcaaccg cagatcgtaa tccaccagca agctcttcgt       780
     gctcctttgc cgacattcga tgggcagtac gaaaactggc ccaagtttag gtcgatgttc       840
     caggatttga tgcggaattc tccagactcg gacgcagtga aactttttca tctggacaag       900
     tcgctggtgg gaagcgccgc tggaatcatc gatgctaaaa ccatccagga caataattac       960
     caacaggcct ggcagatttt ggaacagcga tatgagaaca agcggttgat tatcgatgtt      1020
     catgtccaag gtatcatgca gctgaaaaag gtggctaaga agtcatcaaa ggagctacgc      1080
     agcctaattg atgagtgctc aaggcatgtg gagaatttga agtttcacgg tcagcccctc      1140
     gaaggagtct ctgaacttat cgttatccac atcttgtcag cagcggtcga tcaagaaaca      1200
     atggagctat gggaggccac aatcgagcac ggagaccttc caaactacga cgataccatg      1260
     gagttcttaa gaaagcggtg tctcatcttg gagcggtgtg aatctactgc accggcattg      1320
     ccgtcttcca agcaaacggc ctcgaaggca gcatcatcgg tgaaagcgtc taagattttt      1380
     gcagcagcca ccacatctag cgaagtcgtc tgtgagctgt gtggtggaga tcatccgaat      1440
     ttcaagtgca gcacgttcaa aaatatgagc attgcgcagc ggttggcaaa agcaaaagat      1500
     tctagagttt gcttcaattg tttgcgtaag ggccatatga ttcgatcgtg cccatcacag      1560
     agaacgtgtc caaaatgcca gcagaagcac cacagcttgc ttcatcagga tcagtttgag      1620
     agtccagcgc tgcaaaagtc aaaggacaaa tcggaggaaa ccgcggctga acgcctggaa      1680
     atcaacggca aagcagattc tgtaccgcag gagaatggaa gtgtatcagt cgcaacgtcc      1740
     tgcgtcggtg gtgaacccct tcgttccaaa gaacaagtgc ttcttcaaac ggcggtgatt      1800
     gatattatcg atgcacgcgg ctgtctccat ccgtgccgtg cgctattgga caccggttca      1860
     caggcacaca tcttgtcaga agccatggcg aaagtgcttg gcttgcccac tctgaaatgc      1920
     aacataacag tagttggtgc aaatggaacg aagacacaag tgaaaaaagg attgaacctg      1980
     aattttgcat cgagatacag cgctctccaa gacagccata catgcttgat ttcagacaga      2040
     ccaactggaa ccgttccatc cgtggcaatc gacgtgtcat cttggaatat tcctcccgga      2100
     ctacagttgg cggatccgga cttcttcaag ccaagtgaag tcgatttggt gctggcctcg      2160
     aattacgtct gggatttgct ccggtccaaa aaggtggtac tagcgaacgg tactgcatct      2220
     ctgcgagaaa ccgacctggg ttggatcatc acaggtacat acgacccgta ccaacaggtg      2280
     agtggcacta ttcttctctc taatgttgtc gtgcaagacc cactggtcga gctattggaa      2340
     aggtttttgt ccgttgagga ggtggctgaa agctcacctc taaccactga agaagaagaa      2400
     gttgagcagc atttcgtgga aacctatcgc tgggatgaat ctggtcgatt tgtggttcag      2460
     atgccttttc gagaaactgt tacggagctt gaggacaacc gaagccttgc gttgaagcga      2520
     ttctttacct tggaaaggaa actgtcgcgc aatccagatc tgcgtagcca atacctcgac      2580
     ttcatgagag agtacgaatt gcttggccac tgcaaggaga tcaaggaaga aggcgacgtc      2640
     cgtgggcagc cacggtacta cttaccgcac catgcggtgt tcaagctgac aagttcttca      2700
     acaaaagtga gagtggtgtt tgatgccagt gccaaggcgt cgaaatactc cctcaacgat      2760
     gtgatgcaaa ccggcccaac agtgcaaaac gatatattca ccgtaaatct gcatttccgg      2820
     cagcacgtgg ttgcattctc cggggatgta acgaaaatgt accggcagat aaatattgat      2880
     cctgatcata cccgattctt gcggattttc tggagagaag attcgtctaa accactgaga      2940
     gtgctggagc tggtcactgt aacatatgga acggccgctg ccccatttct cgcaaccaga      3000
     tgcttggtgc aattggcaac tgaggagcaa catcgtttcc cggtagcatc caagatggtg      3060
     ctggaggata tgtacgtaga tgatatgctt tccggagcgg attcagaaga ggaagcagcg      3120
     cagcggttgt cagaattaaa ggagttgctg tctgctggag ggttcccaat tcgcaagtgg      3180
     agtttaaatt catcggtagt gcttgaaagt gttcctaaag aagaacgaga aaggttagtg      3240
     aaagtcggtg atagtggact aaacgaagga ataaaggcac ttggagtgtt ctgggacaca      3300
     aaaaatgata aactgacgtt cgagaattgg ccagaagagg ccgaagagca acggtttacg      3360
     aaacgctatg tactatcaca aattgcgaaa ctgtatgatc cattgggact tgtgcaacca      3420
     gtgattgttt atgcaaaaat tgtaatgcag aaattgtggt ctgcgaagat gaactgggaa      3480
     gatgagcttg aaggtgatct actgaacgag tggttagcgt tccgtaaatc gttgaccaag      3540
     ttaaaccaga tacaagtgcc aagatgtgtg aagctgcctg atgttgtccg gtatgaggtc      3600
     catggattct cggacgcctc catcaccgca taaggtgcct gcgtgtatct gcgaagtgtt      3660
     ctgcctgacg gcaccgcagt gctgcgtctc atgtgtgcca aatcaagggt ggcacctttg      3720
     aagccaacca ctgttccaag aatggaactg ctagctgctt tggtgttggc tcaacttgtg      3780
     ataaaggtga ttaaagcgtt gaagattgac tactccgaag tgttgttgtg gtgtgatagt      3840
     cagatagtgt tggcctggtt gaacaaaccg ctcggttcct tggaagtgta cgtccgcaat      3900
     cgagtggcaa aaatcaacaa gattaccagc aatttggtgt ggaagtacgt gaattctcga      3960
     caaaatcctg ccgacgtcgt atctcgcggt cagttcccag cgacgctgtg caggaatact      4020
     ctctggtggg acggaccgga attcctacac caagaacagt atcgtgatcc tgaccatcgc      4080
     cccatcctcg aatcggaaat tccagaatta aaagtggcaa cagccactgt gcaacggatc      4140
     gaaatattgc ctgtgttcga aaggttcagc agcttccgta aactccagcg tgttattgcg      4200
     tatgtcctac gatttgttcg taactgccag cacaagtcgg cgggtcatct gaaatcaaca      4260
     tcgtttttga gtgttcccga aatgcgagcc gcattgaact gcatcgtaaa ggtgattcaa      4320
     atgttggaac tacctgatga aatccgctgc attgaaaggg gtcaaatgcc acatcggctg      4380
     gcaaatctta gtccgtttct tgatgaggaa catttgatgc gggtaggagg tcgattgcag      4440
     aagtcatgcc tacctttcga aaccaaacat ccgctacttt tgccaagcca ttccttatcc      4500
     gagatgatca tccgagcgct tcacgtcgag aatctacacg tggggccatc cggattattg      4560
     ggcatcgttc gtcaaacgtt ctggccattg aagggtcagt ccacaatcaa gaaggtgacg      4620
     cgcggttgta tcccatgttt ccggtcgcgg ccacgaggcc tccagcagct tatgggtagc      4680
     ctacctgagg aacgggtgaa agaagctgca ccctttgagt acacgggtgt cgactacgct      4740
     gggcccgtat ctgtgaagca aggcaaatat cggccaaagg ttgtgaagtg ctatatcgcg      4800
     gtatttgtat gtatggtgac gaagaatctg catctagaat tagtgtctga tcttaccact      4860
     accgccttca tcgctgctct agaacgcttc accaaccgcc gtggtccagt gcgcaaaatg      4920
     ttttccgaca acggcaccaa ttttgttggg gcttcaaacg agctgcatca gctgtacacg      4980
     gatttccgca gcgaggccca ctgtcgtgca gtcaacgatt tcttgctgcc tagagaaata      5040
     gagtggcact tcatcccccc caggggacca cattttggtg gcttgtggga ggccggggtg      5100
     aagagtgtca aaacgcacct gaggaggacg ttgcaaaccg caacattaac atttgaagaa      5160
     tattgcaccg tacttacgca cgtggaggca atcttgaatt caaggccact gttcagtgct      5220
     tctgacagtc cggatgaacc tcttccaatt actccagcgc atttgcaaat cgggaggcca      5280
     ctggtttgca ttccaaagcc gtcttgcaca ggaactccgg acaatcgcct ctcccggtgg      5340
     cggtatcttg ataagcttcg ggaacacttc tggggtcgtt ggtcccggga atatttgact      5400
     tctctccagt ctcgaagcaa atggacagca acatcaccaa atgtccaacc cggaacggtg      5460
     gtgcttttga tcgaggacaa tcttccgccg caggtgtgga agctgggcat cgtgactgct      5520
     acttacccgg gaccggattc cttggtgcgg gtggtggatg tcaagacgtc aggcggaact      5580
     tttcggcgtt cgatcagcaa attggcacct cttcctacaa tggataactt cagcttcgca      5640
     gccgcggggc ttga                                                        5654
//
ID   BEL-923_AA-LTR repbase;    DNA;    INV; 373 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.08, Created)
DT   04-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-923_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-373
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-373
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4578-4578 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 373 BP; 116 A; 66 C; 86 G; 105 T; 0 other;
     tgtcggtgga tgtccttcca cctaaatgaa gtcttcaact gatgtcaaaa tttttatttc        60
     ttccgttttt attgccagcg gttgctatga tgaacttttt tgaataattg gcaacccttc       120
     caatttcatg gcaacgttga taccgttaaa cgacgaacga tcaggaggtg agaaaaaatg       180
     caaaaaaata gaatctcgtg tgcggtagga gttagttgga ttcgtgcgtt cgtcgcggtt       240
     agaaaaacaa tcgaacatgt agagcgaaac gagaatagag aaaatagttt gtagtgcaaa       300
     aaaagcgttt ttattcagtg aaagaaccta cagttcatag ttccccgaga ccaggccgga       360
     ttgagcctgg aca                                                          373
//
ID   BEL-924_AA-I repbase;    DNA;    INV; 2729 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.08, Created)
DT   04-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-924_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2729
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2729
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (04-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 2729 BP; 826 A; 533 C; 764 G; 606 T; 0 other;
     aaatcaaaat tttaaccgat cggattcttc ggaatggcct tttcaccgtc caaggagcag        60
     tgtatgttat gtaccctctc agagtcaatg tcggagaatg gtaattgggt tcagtgcgga       120
     aagtgtagcc gatgggctca ttttttgtgc gcccatgttg aacaggaagt ggccaatacc       180
     gattggcgac gtgctcagtg cgtgttaagt gatgctcagc agcttaaaat tcccgaagct       240
     ggatgcaaga gaagagcaaa gaagtccgtc caaaaaggtg aaggagggtc caagcgggga       300
     ggtagctccg accgttccga tctagatcca gaggacaagc agtctgaaga ggagcagctc       360
     gccaatgaga aagccttcgc gaagcgaatg gaagtgcgga agaaacttct tgctcggaag       420
     aaagcctggc aagaggagca gttgaaacag gaaaaagaaa tgcgtgagct ggagctgcag       480
     gttcagcgag atatagagaa tcagcagttg cagcacgagc aggaaatgtt gaatgttcaa       540
     ctagctgcag agaaggagtt tttcaagaaa cgggatgcaa tccggaggaa attccacagc       600
     agcgtgaaaa gagtgaacga gtgcaaggaa caatttggag ctgtcggtgg agcgacgaat       660
     agtgaacagg accgaaatgg agcagagtgg ctacagcagt caacaacagc agacgagaag       720
     ccgtctgcga tggacttcag aggagcgtac tcgaaagacc ccactagcaa gtcgaagccg       780
     aaaccaatga aaaagatgcc aatggttgtc gaatccgacg gtacaagtga ggatagtgag       840
     agtgacgagt catctgcaga tggtcgtagg aagaatagtc ggcgtagtag tcttcgcagt       900
     agcagagttg atgatgggcc ggggccatac gttggtaaaa tcacgaggga acaactagct       960
     gctcgaaaag cggtgtctca tcatcttccg atgtttcgcg gagaaccgga agtctggccg      1020
     ctgtttatca gcagtttcga gcacactgca atggcgtgcg ggttctcaaa cctggagaat      1080
     ttgaaacggc tgcaagactg tcttcagggg gctgcgcttg aagcagtcag aagccgattt      1140
     gtgctgccgg attctgttcc agacgtcatt agtgatttga gaaatctctt cggaagaccg      1200
     gaaaaacttc tgaaaacgct gttggctaaa gttaggaacg ctccagcacc tagagcagac      1260
     cggttagaga cattcctcag ttttgggatt acagtgaaac aattgtgcga tcatctggat      1320
     gctgcgggac tcaaggatca tcttaataac ccgatgctgg tacaggaatt ggtggacaaa      1380
     ctgccaccga gttacaagtt agattgggta cggtataagc gaggaaaagt ggatagtccg      1440
     cttagaatgt tcacgagctt catgacagaa atagtgtccg acgtgtccga ggtgacagac      1500
     ctttcgacac tgtcgtttaa cgaacgtgca cgcgtgcgag ataatttcag aaaagatttt      1560
     gtacatgtgc atgattccga tcaatggaat gataaaacta accatgagat atccagccga      1620
     ccatgttgga tttgtgggga gacggatcat ctcatcagga actgcgaaga gtttagacgg      1680
     atgaacatcg cggaaaaatt gtttgaggtt gagatgctgg ggctctgtga agtatgtcta      1740
     aacaagcacg gaaaaggtaa ctgcttgtca agaatatcgt gtatggtgcg ggactgccga      1800
     ggcaaccatc atactttgtt gcatagagtg gaagaatcgg tgcaattgca gacaactaaa      1860
     actaataaca cgatgatttt tcggatgatg cctgttacac tttacgtggg taagcggcaa      1920
     tatgatacaa ctgcaatgtt cgacgaaggt tcgtctgcta cgttgataga cgatgtggta      1980
     gccaagcatc taaaagcgga agggattcac gagccgttga tagtctcatg gacaaagaac      2040
     atcaatcgac ttgaaagtga atcaaggact gtggagatga tgatctcggc aaagggttca      2100
     aaggagaagt tcccgttgtt caacgcgcga acagttacag aattgcaact gccgacacaa      2160
     gacatcaagt actctgaact tattcagcgt tactcacacc ttgcagaagt gccggtgaaa      2220
     gattttgagt gcagcatgcc aatgattctt gtcggtttgg acaacctcca tctttttgcg      2280
     ccgttagaat cacggattgg aaaaacaaga gaaccgatag ccgtgcggtc gaagatggga      2340
     tggacgatgt acggatcaga gaagcggaaa actagtaagc aaaccttcat aaatatgcac      2400
     tccatagcaa caataagcga acacaaaacg tcacaagcga tgaaagagaa agatggatca      2460
     aggaaggtat catttggcgc aagtagattg gatgagatat cacaagatgc taatccgagg      2520
     atgaagtgca ttgaaaatcg ttttcttcat ctgagcagac caaagacgaa ggaaaactct      2580
     caggtgtcgg cgatctgttc aatgtggtcg atggtgtcag ctccagatgt tgggatcgca      2640
     agcaatcagt caaactggcc agaatagagt tcatggacag taaccctgct cctgatctag      2700
     ctttagaggc agagttacgg gccggggaa                                        2729
//
ID   BEL-924_AA-LTR repbase;    DNA;    INV; 677 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.08, Created)
DT   04-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-924_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-677
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-677
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4579-4579 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 677 BP; 238 A; 82 C; 170 G; 185 T; 2 other;
     tgttctggca gcactgccgt atcgagaacc gatgagatgc gagctgacag aaagatagac        60
     agatgaggtg acatgaagaa gagagagaaa gatagagaac tggaaaaagt gaatacgagg       120
     gataaagaaa aacataaaca aaaacaattg gattgaatac agttagttaa aagtgttatc       180
     gaagttataa tctgaatttt agtgaattag tctgaagtat agtggtagtt agwgtagtgt       240
     agtttatwta aaatcgtttg gtgagctgat cacgttgtta ttgcgttgag gatcgaaaca       300
     attttgttaa aagacgttag aaggacgaaa gtgatttgct agagacggag cgaatagcgc       360
     ttatatcccg gacgggaact actgtttgcg aggtacctgg gagtggttgt aagtgggaaa       420
     cacaggcgca gaaagggatg tactatatct aacgctattt gaattgatag gaggttggtg       480
     acggcataac caaggaaata cggtagagga aaaattccaa gaagaagaac aaactaaaat       540
     gtaagtgcaa aacatattta tttcgttata ttgctctgta ttaatgtgag taattcattt       600
     ttataattga ttatagtttg atcttcctgc aaagggttga ttcagcaaaa acggtttgat       660
     tcttcctaat ccgaaca                                                      677
//
ID   BEL-925_AA-I repbase;    DNA;    INV; 2712 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 26.08, Created)
DT   05-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-925_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2712
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2712
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 2712 BP; 835 A; 565 C; 726 G; 586 T; 0 other;
     ttctcaaaaa gaaagtgaca ccaacgtagt gtcttaagga gaagttggac ctaacacaag        60
     atggcttctg attctgaatc cattaaagat aggaccgtcc tcgatctaac agaaactccg       120
     tgcggtattt gtggcccgtc aacatgtgag gaagagatga ttggctgtga tggatgctcg       180
     gaatggttcc actcccattg tgtgggcgtc attgaagata aatttcccaa aaggtggtac       240
     tgccaaagtg aagcctgtca ggagaaggcc caagagtacc agaagcagaa gaagcagtct       300
     cgcagtcgta agcaaacgaa cgagtctgac aaatctagca ttcactcctg tgtgggtgcg       360
     tctagcgtgg aagccaaggt cagagcgcta gaagaacgcc agaaacgaca gatgaaggag       420
     ctggaaatag aaatgcagct acggaagaag gaaagggaga tacagcgggc gctcgaaaag       480
     aagaaaatgg agatggagat gcagttgcgt gccgaggaag aagaagaagt aaaggcttgg       540
     caagcggaga tgcttcagag gaagaaggaa caaatcgagc gtatgaaagc aaaccaggaa       600
     tcattcgaga ggcaaatggc agccatggac aaagagttgg cgggactgtc ggccctgaag       660
     gcgccaaagc cagcgtcgaa aattactgcg gacgttgctg agccctctag caaacccaaa       720
     cgaaatgcgt tgaagctgga aaaagagaat gccaacaagt ttgtagaaga cgatgtatac       780
     accgaagagg aagacggtga caacgaaaac tccaaaggtt cagatctgtg gagccagagt       840
     tcctattcgt ccatcgggaa taaggcaaaa ggaacttcgc ggagagttag taagcaattc       900
     gaccgtgtca gccaaaacga gctggggcaa cagcagattg gaccaacgaa gacacaaatg       960
     gctgcgagaa gtggactaac gtataaactt cctaagtttt ccggaggacc agcacagtgg      1020
     ccattgttct acgcggccta caaagcatcc aacgagtctt gtggatacat gaaccacgag      1080
     aacttaatgc gactgcagga ggcgcttgaa ggagacgctc tcgagttggt atctggtcag      1140
     ctactttttc ctgaaaccat cccgagagtt atggagaaac tgcgtcgaca ttatgggcgt      1200
     ccggaacaac tcctcgaaag cctgttggac aaggttaatc ggttagatcc tccgcaacca      1260
     gacaatcttc gaagtttcat tccatttggg aatactgtgg aacagctctg tgggcatctg      1320
     gaggccgcag atttacggca acacctcgtc aatccactgt tggtaaaatc gttagtctcc      1380
     aagctgccgg accgcgaaaa gcgagaatgg gtacattatc aaagaagcca tggcgaaaca      1440
     aatttgcgaa cgctgacgga ttttttgatg ggcattgtgg atgatgcaag tgaagccaac      1500
     gttgatgttg atttcaattt gccgtctcag tctaggcgtt cccagaccgg caacaagaaa      1560
     ccgtatggaa cgggtgcgtt atactgtcac tgtacaataa acagttcgac ttccaagtca      1620
     ggcgagaaaa agtgtacaaa gccgtgtaag ttctgtaagc acacagacca ccatctgcgg      1680
     cactgtatgg atttcgctaa actgcaatat aatgagcgac tacgaattgt cgcccgtgag      1740
     aagttatgcc actcgtgcct caacagtcat ggaggacaat gtaaatttaa ggttcgttgt      1800
     agcatcggag attgtagagg cttccacaat tcgctgatgc atccggtaga aaacgcaatt      1860
     ggatgcagta cacatactaa aacaaattgt cccgttatgt ttcggatcgt tccagtacag      1920
     ctgcactgtg gagaaaaatc agctacggtg ttagcttttt tggacgaggg ctcgtctgtc      1980
     acactggtgg aacaggaact tgccgaccgt ctgggtgcgg tcggagtaca agagaggctg      2040
     accatcaagt ggacgggaaa tgtatcaaga gtagaaaata ctcgaagaac tagtatgctt      2100
     gtgtcgagta atgttgatac tgggaataag caactattgc acactgttaa cacagtgaaa      2160
     aagctgatgt tgccgtgtca gaagctgaat taccaagagc tgatcgagca atacgaacac      2220
     ttgcgagggc tgtctatcga atcctacaac gggcatccac agctgcttat tggagcaaat      2280
     aatattcatt catttgtccc gatagatgta agagtaggtg cgtcgatgga acctattgcg      2340
     gttcgaacca acctcggatg gacagtgtat ggtccaatac aaactaccat ggtgacatct      2400
     agccactatc tcgggtgtca tcagctaact gaaacaagga catcgttgat ggaagccgcc      2460
     agtatgtcag cagttgagga atgtgttcaa gaaacacaaa ctacggaacg tgacaactgg      2520
     tttgacaacc tgtgccatag gaagccaaac aaaccacggg tcctgaataa ttcagttttt      2580
     catgtacaaa ctagagaaca aggtttcggg gaaatgatta agtgcaccac tgtaggaaag      2640
     ttgcagaaac gaggtgactt tagcgacgca gagtacagta aatccaggaa tgccggatgt      2700
     tacgggctgg gg                                                          2712
//
ID   BEL-925_AA-LTR repbase;    DNA;    INV; 556 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 26.08, Created)
DT   05-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-925_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-556
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-556
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4580-4580 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 556 BP; 198 A; 88 C; 115 G; 155 T; 0 other;
     tgttgcgacg tcgcttgaac acgcctaatc gtgagcatag gtgaaacatg acagcttgcg        60
     aacagctgta gtggtagttg taaacatata tagttgtgtc aatctatgcg gaatagagta       120
     gagataaaca aaaacataat tgccgtttac tagcaaatcg agtgatcaaa tcgttgttga       180
     tcgtgtttat tggttttgta cactaaatca ttatcaccag aagaaactga aatagttccg       240
     aagtatcgta atagaacctc aaactatggt gccgaagatc aaaagttata cgtgataata       300
     gaagttccta gcgttcgttg gtttctgcat aaagtaaact agggtagccg gtgcaatatt       360
     caacccaagg aaaacggaat acaaatactc aaaagtgagg gaaaggaaac cactttcttg       420
     taagtagcta tcaaaacaat ttattttaaa aaatgtaatg tgtaaatgta aattaagaag       480
     taataaatat ttacagtttg agcgttgccg aaaaccgatc ggctgctaca aaaattgtga       540
     gtttccctct ggaaca                                                       556
//
ID   BEL-926_AA-I repbase;    DNA;    INV; 3702 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 26.08, Created)
DT   08-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-926_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3702
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3702
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3702 BP; 971 A; 946 C; 802 G; 983 T; 0 other;
     ttttggtgcc gaaacccggg acaatcccgg atagtgatct gttcccacgg aacgaagaac        60
     ccatatcgtt tgtgcaaggc cattttgcca ctccgcgtgt gatttgcaca gaacaataaa       120
     ggcaattcaa ccattgtttg ccagccagtt cgtattgttt gaacattaat tgttctgcaa       180
     atagccgtca tccaacgtgg ccgcttaagg ctcaaagtgt agtgctagcg cagcttagtt       240
     tgactgccgc tgtaactaat ctaagtgatt cgcacgattg gactttcatc ggtaccccac       300
     gctgtagaga tcaggctaag tacgatcgga gcaggtgagt gatctttcta ttgttgggaa       360
     aatggcaacc gccacgcgaa gccttaagca gttagtcgcc aaaagggcaa acttacttaa       420
     aactgcagaa ttgattcgcg aattcgatga acgatttgaa gcttcacaag aagccgaaat       480
     acccttccgg cttgaacgtt tggataagtt atgggaggag ctggaaaacg tcgatatgga       540
     actcgaagca cttcacgacg aagatcctgc tgtcgctgaa acacgtgcaa agttccaaaa       600
     catgtattac cgtttgaaag gttcactttc ccaaaagctt ccagctcctg cccaagcgaa       660
     tccacctgct tccgttcaaa accttcatgt acttcctgct tcctctggtg tacgcctccc       720
     agagctccat gatctgttta agtctctgat ccatgacaat tatcagttga caaatatcca       780
     gaaactgcac tatcttcgtg cttctttgag aggagatgct gcccgcataa tatcatccct       840
     ttcaatatcg gcgtacagtt acactgttgc gtggaagcta atcactgatc gctacgagga       900
     caaaaatctg ttgattaagc agcacatatc tgcactcttt tcggtgcctc cactaggcga       960
     tgaatctgca gccggacttt ccgagctagc tgatgagttc gaaaaacacg tcaaaatctt      1020
     ggacacatta gaaactaaag ctcagcattg ggattctgta ttggtggagt tactatttag      1080
     tcgaatggac gccacctctc agaaacaatg ggaacatact cgcgacaaaa ctacgcgccc      1140
     tttgtacgat gatctcatca agttcattca tcaacagtca cgcacactac agtctctaca      1200
     gctctcccaa acagtttgta gtccgacatc ggaactcaag gtaatacagt caagactcac      1260
     tgcgaatcat ttggccgcgg aacaggtacc tagatgtgca gcctgccatc aggcacactt      1320
     cttgtttcaa tgcgagattt ttcgaaacca aactccacat caacgtttcg atttggtaaa      1380
     acggaacaat ttgtgcgtta attgcatcaa gacaacccac caggctagga attgtagcag      1440
     tgggtgctgc aaatattgcc agaagaagca tcacaccttg cttcatcttc cttcgtccgc      1500
     ctctttgatg acgaccggag atcaacaaca tattcaaccc tacgaattca ccaccccaaa      1560
     tcccaatctg tcgcattctc cttcggttcc gtcaagtaat gacccggatg tcacatcggt      1620
     taatcgttcg ctctcgctgt cgccgccgtc ggtattcgcg cctcgcctgc cttcgtcggg      1680
     aacagtcaca cctccgtcta catcttgcca aaccgttaca ccgtctatcg ttggtgaaac      1740
     tactgtgatt ttgttcaccg cccttgtgaa tattcacgat aactacggga atcggcaagt      1800
     agcacgtgcg cttttagaca gtggctccca gtcgagcttt atttccgagt cgttgtgcca      1860
     gcgtctttcg cttaatcgaa cgaaaattaa catgcccgta aatggcatcg gccaatatgt      1920
     tgtcaacgta cgcgacttag tttctgttaa catttcttca cgcttcaatt cacaacactt      1980
     ccggatggat tgtttggtgt taccgaaatt aacggtgaat cttccttcga aaacagtgga      2040
     cattaagatg tggaatattc ccaagcatct tccattagcc gacccacagt tcaatcaatg      2100
     taacggtatc gatttgattg tcggtgccga gctcttacca tttatcctgc aacccgatca      2160
     aattgctttc gacgatcaat tgccgccact tcagaagacc tgtttcggtt atgttttctc      2220
     tggaaaggtt ttcactgcac cagaagcttc agttacttgc cttatcgcca ctttcaacaa      2280
     tttggactca caggtgagaa ggttcggtga ggtagaaaac ttcggcgatg gcaaatgtct      2340
     taccgctgaa gaacaacgaa gcgaagcaca cttcgcaatg acgcacagtc atgacggtga      2400
     cggtctctat gtagagcgat taccagtacg gaaggaacta cttccatcaa tcggggatac      2460
     ctggaatact gcagctcacc gattctcttg cgtcgaaaga agattttgct ccaatgatac      2520
     tctacgcaag agttacacgg atttcaagaa aaggaacgag cggctccgtc acatggagga      2580
     ggtgatgact cgcgtcgcgt cgccccagta ttttccgccc caccctgcag tactacggcc      2640
     cgattcaacg gcaacgagaa ttaaagtgat ctccaatgaa tcatctaaag gcagtgatca      2700
     actttctcta aatgaagcgc aaacgctgag aaatgctgaa tttgagtcac cactgaagat      2760
     acttgatctg tggatcgttg attccggttt acatcggcta aacgaacgac tagcccattt      2820
     atgcccaact caacagtcaa caaccgttcg tcaacgtttc tgaccgtttc gtgacagaga      2880
     tctaactcgc agaacagtcc actactgtgc ggcttgtatt cgatttcgac ccccagcaat      2940
     caaccaattc atggctccac tcccttcaaa tcatgtaacc gtagcaaata ctgggcagga      3000
     ttacctgtgg ccgtttttcg atcgaccttt ggcaggcagg ggcgtgtcgg ttaaggtttg      3060
     ggtcgcagta tacgtatgtt ttgccgtaaa agccgttaaa ctcgacatcg ccgccgtgtt      3120
     gtcgtgcgtc aattctctga atcgcttcgt tcgtcgcgcg ctttgtgaag ttgaggagat      3180
     gcgacaaatg ttggttgatc aactgagtga tattacatgg acatctgaat gtttggagaa      3240
     cgataccgaa ttccaattta ttccgccttg tgctacgcac tctggtggtc tacgggaggc      3300
     cgtagtcgag gccttcgaac cactgttcct gaaaaccatt gaagcagctc cacaccacta      3360
     cgacgacatg cgcacagcag tagcgcaagc agaatgcacc agaccattga cgcccctttc      3420
     caacgattcg cgggacctct ccggtctgac tacaggccaa attctactag gagagtctat      3480
     ttattatttt cctgggccaa atctttccaa agtgccgact aatcgtttta accattttca      3540
     gaccacgcat cgatcagtgt acgtacgtgt gatcgatgta cgtgtatacg acgtcgagca      3600
     acctccgagt tgtgccgttg caaattatca ggatcataca agatctacgc attgtgagtc      3660
     atctacatta ttttgaaggc tacgcttcaa cgtggccctg ga                         3702
//
ID   BEL-926_AA-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 26.08, Created)
DT   08-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-926_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-298
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-298
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4581-4581 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 298 BP; 77 A; 79 C; 49 G; 93 T; 0 other;
     tgttgcggca gggattatgg ttttggataa acatactatt ttttaaagtt taccgtcatc        60
     acaaatacca ccttgtacga cacatataat accacttgca ctatatacca tccaacactt       120
     tgaactcaat aaataagtcg catttgaact accgtatagc gcagaacgtt tttcgtttcc       180
     tgtccgaaac ccattttgtt actcgcgcca gtccgcatag tcctccatca gccttttcgg       240
     gtcattccca gttcgccctc gtcgtcgtgc cgttcaaatt acggtgatta tcgcaaca         298
//
ID   BEL-927_AA-I repbase;    DNA;    INV; 6234 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 26.08, Created)
DT   08-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-927_;
KW   BEL-927_AA-I; BEL-927_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6234
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6234
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4551-4551 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 6234 BP; 1828 A; 1459 C; 1512 G; 1431 T; 4 other;
     actttacaaa attcaatatc gactaagaat ggcaagtcaa aggtctaaag gaagctccca        60
     agatcaacac tccgccggcg cgagaggact tctagccgat gtcggtgatg cgggtagaaa       120
     cggtaacagc catccggaat ctgtaaattc ggagaagacg aggagacagt tggagcacgc       180
     tgctcaatcc aagctatcag ttcagcgagg gcaagcagta ccacagaagg tagtccaacg       240
     tgaaggtggg tctcagttgg cgttcaccgt agaattccct gctaatcaac atgcaaaagg       300
     agccagaacg gtgagtactg agaaaggagc agttcaaggg ccctccaaaa ctcgagcgag       360
     tgtwtcgacc catgatgttc aagccaagtc agctcttcct atgcttgcgg atggtgtcca       420
     gccacgacgg aatcccccgc gccgcgctcg ccaaaagact gccawtagat gtgcattatg       480
     tgagatgccc gataacgaca gaatggtaca atgcgacgaa tgtgagttat ggtgccattt       540
     caattgcgtt caagtgggtg aatcgatagc tgaggtgagt tggttttgcc ctggttgtgc       600
     taatgtgaca ataatgaaga ccccaagcga gttgaatccg ccccccaatg acggagcttc       660
     gaacaagtca gttggtagat cgagcaggag aagcgaggca gcgcgaaaaa tcgagctgca       720
     gcttcaaaag ctggaggagg aaaggaaact acagctcaag tatctggagc agaagtacag       780
     tttgttggaa gaactggaga gcgaasgttc gtcggtagta agcgatctgg aatctctagc       840
     agaaaatgcg tctaaaatac agcggtggat ggaagatacg gaaaattgcg gcgatgattc       900
     cggccttgta gatgtggttc ctgaaggtga tcctggagcg aacggcgttt tatatggaga       960
     attaatgcca aacaacccga gatacagcgt gtcggtacgg accaacccag gagagcatgc      1020
     acagtcaact ggaagaccaa ccgaagtagt gtgtaatagg caacaaaatc cgaccwcgag      1080
     ctttcagcgt tcacagcgtc taccaaatct tcgcccggaa gtacgattcc agcccacaac      1140
     ccgcagggaa acaggaacct tcgtggatgg tttaaacttc attcccagac aaggatccac      1200
     tccagttcat ccgtcaagaa tcatggagcc gccggttatg gaagatggtg aaggtatcgt      1260
     ctattctctc aaccgaagcc agttagctgc tagacaagcc ggagtttagc ggaaacccgg      1320
     aagattggcc actgttcttt tcaattttca actcgtccac tcagctttgt ggattttcaa      1380
     atgaggagaa catgctcagg ctccgtaagt gcctcagggg aaaagccttg gaagcagtta      1440
     aatgccgctt actccatcct tcaagtgttc aaggagtaat gtccaccttg aaaatgctat      1500
     acggacggcc agaaacgatc atacaggcga tcgttcggaa aattcgcgca cttcagcccc      1560
     ccagtatcga aaaactagat accgttatcc aattcgcgtt aaatgtggag aatctagtcg      1620
     ccaccgttga ggcttgcgag ataggagact ttatgtacaa cgcatcgcta agatatgagt      1680
     tggttgaaag gcttccacca acgttacgtc tggactgggc aaaaacctct agagacaatc      1740
     cttctcctaa cctctcggac ttcagtttat ggttacgatc tattgcggaa gacgccagtg      1800
     cagtttcaat ttccgcaggg atcgacagtc gtaccagaac gggaaaaaga gatggctaca      1860
     tcaatcttca tgctgaagtg gaccagccca caaataagct aacaaccaac caggtaccaa      1920
     ttaaatcttt tctccaaaag gagtccgcca gagaatgtgt cagctgcaaa ggaagctgta      1980
     caacgcttgc tcagtgcaaa cggttcaagg aacttagttg cgaatctaga tgggcggtag      2040
     tgcgtgaatt taaagtatgt cggaagtgcc taaggaagca taacggaccc tgcaagtgga      2100
     agaaggagtg tggcaccgac ggctgctcgt atttgcacca tccacttcta cacaatgtga      2160
     aaaaggattc gaatgcctcc actcccggtc cagtcccctc atcagttcaa aataatgtta      2220
     ctacgaattc aagctgcaat gttcatcaag gtcagtccga gattctgttc agaatcatcc      2280
     cggtgcttct tcatggtcca acaaaatcct tgcgtaccta cgccttcgta gatgatgggt      2340
     cggagctcac attgatggag cagagtttgg ctgacgaaat aggggttgaa ggcacgaaaa      2400
     agtcactgtg tctgcgatgg actggaggtg ccaatcgaac ggagagtctt tcgcaaatag      2460
     tgaatctaca aatttcaggc gtaacgaacc cctctaaaaa attcccgctt gcagaagtgc      2520
     acacagtcga aagtctgcaa ctccgaccac agacacttcg agtttccgag atgcaacaaa      2580
     agtatcgtca tctggaaggt ttgcccttgg aatcgtatga agatgtcagc ccacgactgc      2640
     taattggtct ggctcacgca agcctgggaa acgttacaaa gtctcgtgaa ggaaaaccca      2700
     atgagccaaa gcgatcaaaa ctcgattggg ctggacgatc tatgggagtt gttccagaga      2760
     tacgaacacc tatgggcaga tcaaccatca cagggtccag ctctgtgaat gcgatcataa      2820
     aacagatcaa gatctacatg aggcaatgaa acaatatttt tcattggaaa gcattggtat      2880
     cagtaagccg aaccaactgt tgttatctaa cgacgatcaa agagcaaatg acttgctgca      2940
     atcgcttact aaacacgttg acgggcgtta cgaatccggc ctcttatggc gatatgaaaa      3000
     cgtgaggctc ccggaaagca aatatatggc actgaaacga tgggagtgtc ttgatcgtcg      3060
     aatgcagaaa gataatgggc ttgctcaggc gctgaaggtg aagataaatg attacttagt      3120
     taaggggtac ataaggaagc ttacagataa agaattagag acctgccata atagagtatg      3180
     gtacctaccg atgtttccag tagtaaatcc caacaaaccc ggtaagacac gacttgtctg      3240
     ggatgcagct gccacctccc atggagtttc gctaaattca gtccttctga aaggaccaga      3300
     tcagttgaca tctctcctat cagttttaat tcagttccgt gagtaccgtg tggcagtctc      3360
     cggtgacatc cgtgagatgt atcatcaagt cctgatgagg actgaggatc agcactgcca      3420
     acgctttttt tggaaagaca acgagtcgga tgcaacgccg agtacatacg tcatgcaagt      3480
     gatgtcgttt ggagcctgct gctcgcccag tacagcacag tacgtaaaaa acactcacgc      3540
     aaggcaattt gcactggaat ctccagaagc tgttcatgct atcgttcatc agcactatgt      3600
     tgacgacatg ctggtaagtg ctgagacaga agatcaagcg atacaactag ctgccgatgt      3660
     gaagaagatt catcaatctg gaggctttga aatgcgtaat tgggtgtcca actctccgaa      3720
     ggttgtcgct gcactagatg gttcggaaac taaagagaag aacatgagca tcggagaaac      3780
     caataccaca gaaaaagtgc tagggatgtg gtgggatact agtctagatt gtttcacgta      3840
     taaaatatcc tctcgtcatg atgcggattt gctgacaggc aataaacggc caacaaaacg      3900
     cgaggtccta cgaacgttaa tgatggtatt tgatccactt ggtttaatca gccacttctt      3960
     gatgtttctc cgggtgcttc ttcaagaaat ctggagatca tctgtcgagt gggatgagcc      4020
     gattcacgat atacacttcg agaagtggtt gacctggttg cgagtactcc cgcaaatttc      4080
     aagcatcagg ataccgcgat gttatcgaac cgctacatct ataggaaaaa ataccgtagt      4140
     tcaaatgcac accttcgtag acgcaagcga aaatggtttt gcggctgttg tctacctacg      4200
     ctttcaagaa ggaacaacag tagagtgtgc tttagtagga ggaaaagcca gggttgcccc      4260
     gttaaaattc ctatccatac cacgatccga actgcaagct gcggttatag gagtaagact      4320
     gtcggataca attctcaagt cccttacgac caacgttcag aagcgctact tttggacgga      4380
     ttctagagat gtgatctgtt ggctacgctc ggatcatcga agatatagtc aatatgtggg      4440
     agtacgaatc agcgagatcc tggaaacaac gaatcttaga gattggcgct gggtcccgac      4500
     aaaattaaac atcgcggacg aaggaacgaa atggaagcga actccagata tgagcaactc      4560
     cagtcggtgg ttctgtggac cagatttcct gcggaaacca gaggaagaat ggcccatggc      4620
     aactcagtcc tttgcagcta ctaacaccga gctccgaccg cacctacttc tccaccataa      4680
     ggttcccgaa ccagtcatcg acatcgatcg cttcagccaa tggaatgcac ttctaaggac      4740
     cacagcatac gtattcagag ccatcagcaa tatgcaacgg tctactcgaa cgactccagt      4800
     agcgaaagga ccgctcacaa aaatcgaact ctctaaagcc gagaactacc tgtatcaaat      4860
     agcccaaaaa agcgcttatg ctgaagagat tttaatactg acctcaaatt cttcagaaca      4920
     gctggaaaac agaattccta aaaacagtcc tctttttcgg ctgtgtccat tcgtagatga      4980
     atcgggagtc ctgaggatgc gtggccgaac gaacgcttgc caatttatag acaaccgcat      5040
     tgccaatcct gttattcttc cccgcaaaca ctatgttaca aaactactcg tgctgaacgt      5100
     tcatcagaaa tttcttcatc agaaccacga gactatcatc aatgaactga agcagcgcta      5160
     ctacatctct cgcttgaaaa cggtctacaa gtcaatacgt aatagctgtc agttctgtaa      5220
     aaacgaaagc gcccgtcctc agcctccgct gatgggcgac ctacctctat ctcgacttgc      5280
     tgcctacagt cgtccattca gccatatggg ggtggattac ttcggcccaa tgcttgtatc      5340
     tgtcggccgc cgtacggaaa aacgctgggg tgttttagtc acttgcctca ctatacgcgc      5400
     gattcattta gaagtcgcac actcactcac agcagattcg tgtattatgg ccttacgcaa      5460
     cgttatcgct aggaggggtg ttccatgtgt catatatagc gaccgtggca caaactttgt      5520
     cggggcaaac aaagagctta aaatcgccat cgaaaaatta aatcaggagc gaattgtgca      5580
     agaattcact tccacgaata caacatggag cttcattccc cccttgtctc ctcatatggg      5640
     aggggcatgg gagagactaa ttcgaacggt caagcagaac ctatacaggt tgcgccccaa      5700
     ccgtctgcca tcagatgaaa cgttcagaaa catgttgata gaagtggaac acatcgtaaa      5760
     ctcacgacca ctaacggaaa ttcctgttga agatgaccaa tcgcctgtac tgactccaaa      5820
     tcacttcatt ttggggtcat ccaacgggct tctgccgtgg agctgttttg atgacggagc      5880
     taccaccctt aaggaaaact ggcgcctatc ccaaacgatg gcaaaccaat tctggaaaca      5940
     gtggctacac gactaccttc cctctctaac tcgcagagca aagtggttcg caaaagttca      6000
     accgattgag atcaacgata tcgtggtgat agtagaccca aggttccctc gtaattgctg      6060
     gcccaaagga cgagtgattg ccacaaaggt ggccccagat ggacaagtca gggaagctac      6120
     agtacaaacc atcgaaggga tatacgaaag accggccgtt aagcttgcag tgctagacgt      6180
     cggcgtagga agaaatgcaa ctaagattgg tcttcggtgc attgaaggag ggag            6234
//
ID   BEL-927_AA-LTR repbase;    DNA;    INV; 629 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 26.08, Created)
DT   08-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-927_AA-I;
KW   BEL-927_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-629
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-629
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4582-4582 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 629 BP; 225 A; 114 C; 105 G; 185 T; 0 other;
     tgtaaagggc gcaacgtcta ccagcaatcc tactacgcct atgactggct cggccgtaga        60
     catcgaccac acccatagca catagaaagg attggccgtc aaatgtcata tacgcggaac       120
     aatagatgaa ctagggaata gaagaaagca ttagttatct ggatcgctgc aaaatttgtt       180
     attcctacag aaagttaaat taattaccct atacttatta ttctaaaatt tcacttattc       240
     ctaattggta agacatggaa gtaaattgat tattctaatt attcttaacg caaaattaca       300
     ttagaacagg aatttgaacg ttgagaaaat agagaaaccg acgtatcaat taaaactctt       360
     ttgagctgcg aggtgaggaa acaaacagct aatctcatgc aatattttta attaaaacta       420
     aattctataa ggtttctaca tctcaatatt ggaagaccac tattggaaat catattgttg       480
     tgcgatagtg caaagctact attgtaagta ttacaagtat gtattccgaa ataacctcaa       540
     actaaagccc tgttatatcg tcgcaggaat tttgtaattc attgaataaa gtcttcacaa       600
     aatcgagatc ttgtcatcta tcgccaaca                                         629
//
ID   BEL-928_AA-I repbase;    DNA;    INV; 6370 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-928_;
KW   BEL-928_AA-I; BEL-928_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6370
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6370
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4592-4592 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           959..6238
FT                 /product="BEL-928_AA-I_1p"
FT                 /translation="MTKKLKPKLKVRDNIVDFLKRTSRFLKSYDPAVHSLQ
FT                 VQARIDKLDEKWDEFEEVQAQIEEMEEHEEQADDHKKTRAEFEELYFQVRA
FT                 GLKSKLPSTIPQSPSTSFNIPGGAGAGIQLPKINLPEFNGEYDNWLPFFDT
FT                 FKSLIHSNPDLSAIQRFHYLRASLKGEPLKVVDAFPLCEANYAAAWSAITK
FT                 RYSNVYLQKKRHVNALLQYPKLKKMTANGIHDVIDCFDRHTKILDQLGEVT
FT                 TGWGAMLTQLLVSKLDDSTQKDWEEFALKKQDPAFLHVMEFLEGQXRVLDA
FT                 IAVDQRSESPRSAFSTPFTSFKKSVPKLAVNAASDNFSAKCVSCGGPHYIT
FT                 SCPSFAKLALDKRFQIVNSKKLCSNCLRRDHYCRDCKSTFRCRTCNKKHHS
FT                 LLHPGLSAPGSDSANDTQVSTQTGVSGVSVTAVSSKETPQQALQSSVATIY
FT                 AANIATESREVHVFLSTVLVEVKDNFGRLHTARALLDSGSQANLISERFCQ
FT                 LLKLPRREXSVPISGVGNARIQITSSVSATISSRVTDYTIPMDFLVLKKVT
FT                 EDQPSTTIPIXAWDLPPDMVLADPGFNKRAPIDLLLGLEYFYEFLLLNSGR
FT                 VQIQRLNEGLPLFVNTVFGWIAAGKVDLGTLNPVPCCHVTIDITLEEKIER
FT                 FWSIEELQDVPRRTQEEQDCEEHFKSTFSRDTTGRYVVRLPKQMGFEQMIG
FT                 KSKDMAMRRLLQLERRLGKDSDLRRRYNEAMQAYLEQHHMTRVPEEVLAHD
FT                 NRLVCYLPHHPVIKESSSTTKIRPVFDGSAKTTSNYSLNDALMTGPVLQDP
FT                 LFDLVLRFRKHSVALVADIEKMYLQVKVHPDDTPLQRILWRFSPDEPIATY
FT                 EMNRVTFGLAPSSFLATRCLQQLAEDEGDRHPRAKAALINDFYVDDYVGGA
FT                 DSESEAILLRQDLEQLMPKGGFRLRKWMSNAKGALEGLPADELGTGSTLNF
FT                 DQEQVKTLGIHWQPGPDCLGIDVTSIVFDGQWTRRKVYSIIAQLWDPSGIT
FT                 APVISWAKIRMQLLWIAVQGWDDPLSQDLSSRWTEFYQQLPALSQIKVERH
FT                 AFTNHPMLIQFHVFSDASEAAYGACIYARSIDQLGQIKVELLAAKSRPASL
FT                 KKTTLARLELCGAHVAAKLHRVTVKALKMEGTETWFWSDSTVVLSWIKLPP
FT                 YVWPTFVANRVSHIQELTKGHRWNHVKGIDNPADLVSRGVMPKDLINQQHW
FT                 FHGPHWLSLLDQHWNTEHHLEYERPPEELLEKRKNVLVAADSQSTHPLLDH
FT                 YSNYWKLLRITACVLKFIKKCQHRQSPPTSSVLTVADLQEAKFALVRCVQQ
FT                 EPFAAEIKALANHRPIPAHSSLKLLHPFLDQQGILRVGGRLRLAGESYAVR
FT                 HPMILPSNHTFSRQMAVAFHELSIHSGPRMTLAQIRQEFWPLRGRALATYT
FT                 FRNCIRCFRSNPVPVSQPPGQLPKPRTTPARAFTVTGVDYCGPVYLKPVHR
FT                 RAAAQKAYIAVFVCFGTKAVHLELVGDLTTSAFLGALRRFVSRRGLPSEIH
FT                 SDNGLNFKGASNHLRELYDLLHDPAVNSQIVNETSQRGIVWKFIPPRAPNF
FT                 GGLWEAAVKSAKTSLIRVLGQRRLSFEDMTTILIQIEATMNSRPLTPLSED
FT                 PDELDVLTPGHFLVGSSLMAIPDPDYTDVPPNRLQHYQGLQQVVQQHWKRW
FT                 RQEYISQLHNQNQRFPQATLLKVGQMVVLKEDGDATIQWPLARITEVFPGL
FT                 DGVIRVVKVRTPNGAVYKRQASRVCLLPFEKVVTSPPKEA"
XX
SQ   Sequence 6370 BP; 1630 A; 1502 C; 1616 G; 1616 T; 6 other;
     tatggtgccg tgaccaggat ttgcctggaa aatacgttgt ggacaccatt tctacgcgcg        60
     tgttgcattt attggtccaa tgacctgaag agccggtcat caaccccata agcacccgta       120
     gaagcgccaa agtgaacaat tgttttgtgg gatctaatgg aaacgagcgc gcacagtata       180
     gatagttggt tgcagttatt ctgaatgctt tggtttactg gatggacatg acgaaatctg       240
     tgcgtaacga ggatcaattc accggcgaag tgaacgcttg gacggaacct aaacggtggt       300
     ttccgttgat agtccaacaa gaagtcgtta ccgggggcgc gtatttcata tacggttggg       360
     atacgaggcc ggtgctgcca ctctcactcg gtgagtactt ggctgatgca cctttcgtcg       420
     atgagcagat tgtaactgaa gtttttaacc tttttggaat gcgtaacgtc cgaggacttg       480
     ctggatttag aacgatttga cgaacaccgg ccgatttgat gttgttgtga acgactgaac       540
     tggttttgcg agaagatagt ttgctggaga cggtttttga ccggtaacca tcgatgatcg       600
     gcgtttgcca aagagcgagc gaaggattgc tattgttcca gttggcagac taataataca       660
     atgcctaatt gattaggctc tcaggtgagc ctctttccaa tcttttcttc gtcttctgtg       720
     tggtgctgtg cttcgcaaat tttacagttt ttcctgctga cgtcatctgc tacgcgacga       780
     acggagtttg ccaataagct agcgaaggat tgctgttatt acagttggca aactaatatg       840
     caatgcctaa ttgattaggc tctcaggtga gcctctttcc aattctttat tgtcttctgt       900
     gtggtgctgt gcttcgcaac ttttacagtt ttttcctgcc gacgtcaact gctatacgat       960
     gacgaaaaag ctgaagccta agctaaaggt gcgagacaac atcgtcgact tcttaaaacg      1020
     cacctcacgc ttcctgaaga gctacgatcc ggccgttcat tcgcttcagg tccaagcacg      1080
     catagacaag ctagatgaaa aatgggacga gtttgaagag gtccaggcgc agattgagga      1140
     aatggaagaa cacgaagagc aagctgatga ccacaagaag acaagggccg agttcgagga      1200
     gttgtacttt caggtgaggg cagggttgaa atcaaagttg ccatccacga ttccacaatc      1260
     cccctccacc tccttcaaca ttcctggggg ggcaggtgct ggcatccaac tgcctaagat      1320
     aaatttgccg gaatttaatg gggaatatga caattggttg ccgtttttcg acaccttcaa      1380
     atcattgatc catagcaatc cggatctgag cgctatacag cgattccatt acttgcgagc      1440
     gtctctaaag ggtgaaccgc tcaaggttgt agatgccttc cctttgtgtg aagcaaacta      1500
     cgcagctgct tggtctgcaa taaccaaacg gtattcaaac gtgtatctgc agaagaaacg      1560
     ccatgtgaat gctcttctgc agtatccgaa gttgaagaag atgacagcaa atggaatcca      1620
     tgacgtcatc gattgctttg accggcatac gaaaattcta gatcaattgg gggaagtaac      1680
     tactggctgg ggggcgatgc tgacacagct gttggtgtcg aagctggacg actcaacgca      1740
     gaaagactgg gaagaattcg ctttgaagaa acaagatcct gcgttcctgc acgtcatgga      1800
     gttcctcgag ggtcaawmca gggtactgga tgcgatagcg gtcgatcagc gttctgaaag      1860
     tccgcgttct gccttttcta ctcccttcac atctttcaag aaatctgttc cgaaactagc      1920
     agtgaatgca gcatcggata atttttcggc aaagtgcgta tcctgcggtg gtcctcatta      1980
     cattaccagt tgcccaagtt tcgcgaagtt agctctggat aagcggttcc agatcgtgaa      2040
     ttcgaagaag ctgtgcagta actgccttcg ccgtgatcat tactgtcgag attgcaagtc      2100
     tacattccgg tgccggacgt gcaacaagaa gcaccacagt ctacttcacc ctgggttgtc      2160
     agcacccggt tctgattcag cgaatgatac tcaggtctcc acgcaaacgg gcgtttctgg      2220
     tgtgtccgtg actgcagttt catccaagga aacgcctcag caagcacttc agagttcggt      2280
     agccacaata tatgcagcca atattgcaac agagtctcgc gaggttcacg tgttcttatc      2340
     aacggttctt gtagaggtga aagataattt tggacgattg cacactgcca gagctctgct      2400
     agatagcgga tcacaggcga atctaatttc ggaaaggttt tgtcaactgt tgaagttgcc      2460
     taggagggaa wccagtgtcc ctatttctgg tgtcggcaat gcgcggattc agattaccag      2520
     ttctgtgtca gcaacgatat cctcgagggt cacggactac accattccaa tggatttctt      2580
     agttttgaag aaggtaacgg aggatcaacc atcgacgacg ataccgattk aggcctggga      2640
     cctcccgcca gatatggttc ttgcagatcc gggtttcaac aagcgggctc caatcgacct      2700
     tctactgggc ttagagtact tctacgaatt cttgctactc aacagtggcc gtgttcagat      2760
     acagcgactg aatgaaggac tccctctctt tgttaacacc gtctttggat ggatagcggc      2820
     cgggaaagtg gatttgggca ccctcaatcc ggtgccatgc tgtcacgtaa caattgatat      2880
     aactttggag gagaaaatag aacgattttg gagcattgaa gagttgcaag atgtccctcg      2940
     gcgtacccag gaagaacagg actgcgagga gcattttaag tcaacttttt ctcgagacac      3000
     gacgggaaga tacgtagtgc gtctgccgaa gcaaatgggt ttcgagcaga tgattggtaa      3060
     atcaaaagat atggcaatgc gaagacttct ccagctcgaa aggcgactgg ggaaagacag      3120
     tgatttgcgt cggcgttaca acgaagcaat gcaggcttat ttggagcaac atcatatgac      3180
     gagagttccg gaggaggttt tggcacacga taatcggctc gtttgctact tgccccatca      3240
     tccggttatc aaagaatcaa gttckacaac gaagattcgg ccggtgtttg acggttcagc      3300
     caaaacaacg tcaaattatt ctttgaacga cgctttaatg actggaccag ttcttcagga      3360
     tcctcttttc gatctggttt tgcgttttcg caagcactct gtcgccctcg ttgcagatat      3420
     cgagaaaatg tatctgcaag tcaaggtgca cccggatgac acgcccttgc agcgaatttt      3480
     gtggagattt tcgccggatg aaccgattgc aacgtacgaa atgaatcgtg taacttttgg      3540
     tctggcgcca tcgtcatttc ttgcaacgcg ctgcttacaa cagctggcgg aggatgaagg      3600
     tgatcggcat ccacgagcga aagcagctct aatcaacgac ttttacgtgg acgactacgt      3660
     cggtggggct gactctgaaa gcgaagctat tcttttgagg caggatttgg agcagctaat      3720
     gcctaaagga ggttttcggt tgcgcaaatg gatgtccaac gcaaagggtg cgttggaagg      3780
     cctgccggcc gatgagttag gtaccgggtc cactttgaac ttcgaccaag aacaagtgaa      3840
     aactctagga attcactggc aaccmggacc agactgtttg ggaatcgacg taaccagcat      3900
     tgtctttgac ggacagtgga caaggcgtaa agtgtactcc attatcgcgc agttatggga      3960
     tccaagcgga attacggctc cagttatttc ttgggctaag atacggatgc agctcttgtg      4020
     gatagcggtg caaggatggg atgacccgtt gtcccaggat ttgtccagta gatggaccga      4080
     gttttaccag cagttgccag ccctatcgca gatcaaggta gaacgtcatg cttttaccaa      4140
     tcatcctatg ctcatccagt ttcacgtttt ctcggatgcg tcggaagcag cgtatggagc      4200
     gtgcatctat gctcgttcga tcgaccagct tgggcagata aaggtggaac tgttagcggc      4260
     caaatcccgt ccagccagtt tgaagaagac gactcttgca aggctcgaac tttgcggtgc      4320
     acatgtagct gctaaacttc accgtgtgac tgtgaaggcg ctaaagatgg aagggactga      4380
     aacctggttt tggtcagatt caacagtggt gctgtcatgg ataaagttac cgccgtatgt      4440
     ctggcctact ttcgtcgcca atcgagtgtc acacattcaa gagctcacaa agggacatcg      4500
     ctggaatcat gttaagggga ttgataaccc agccgatttg gtgtcccgag gcgttatgcc      4560
     caaggatctc atcaatcagc aacattggtt tcacgggccg cattggttgt cactgctcga      4620
     tcaacattgg aataccgaac atcatctgga gtacgaaagg ccaccagaag agcttctgga      4680
     gaaaaggaag aacgtattgg ttgcagctga ttcccagtca acacatccat tgttggacca      4740
     ctactcaaac tactggaaac ttcttcggat tacggcttgc gtgcttaaat ttatcaagaa      4800
     atgtcaacat cgtcaatcgc cccccacatc ctcggttctc actgtggcgg atctacaaga      4860
     agcgaaattc gccttagtac gttgcgttca acaagaaccg ttcgcagcag aaataaaggc      4920
     attggctaac catcgaccga ttccggccca ttcttcgttg aaacttctac acccgttttt      4980
     ggatcagcag ggaatacttc gtgttggtgg ccggctaaga ctagccggag aatcgtatgc      5040
     agtgcggcac cccatgatcc tcccaagcaa tcacacattt tcacgtcaaa tggcagtcgc      5100
     attccatgaa ttgtcaattc attccgggcc cagaatgact ctcgcccaaa ttcggcaaga      5160
     attctggcca ttacgtggaa gggcactggc aacttatact ttccggaact gcattcgttg      5220
     tttccgaagc aaccctgtcc ctgtatccca accccctggt caactcccaa aacctcgtac      5280
     aactcccgct cgtgcgttca ccgtcactgg ggtagactac tgtggtccgg tctaccttaa      5340
     acccgtacat cgccgagcag cagcgcagaa ggcctacatc gccgttttcg tgtgtttcgg      5400
     cacgaaagcg gttcatctgg aactggtggg agacttaact acttcagcat ttctcggagc      5460
     gttacgacgc tttgtgtccc gacgaggtct gccttccgaa atccattcgg acaatggtct      5520
     gaatttcaag ggcgccagca accatcttcg ggaactgtat gatctgttac acgacccggc      5580
     tgtgaactca caaatcgtca acgaaacgtc ccagcgagga attgtgtgga aattcattcc      5640
     gcctagagct cccaactttg gcggcttatg ggaggcagcg gtaaagtccg ccaaaacgtc      5700
     gctcatccga gtgttgggcc agcgaaggct atcgttcgag gacatgacga ccatccttat      5760
     ccaaatcgag gctacgatga attcgcggcc actcacccca ctgtcggagg acccagacga      5820
     attagatgtg cttacaccag ggcactttct agttggctct tcgctaatgg caattccgga      5880
     tccggactac acggatgtcc ctccgaatcg gcttcaacac tatcaagggc tacaacaagt      5940
     agtacaacag cattggaaga ggtggagaca ggaatacatc tcgcaacttc acaaccaaaa      6000
     ccaaagattt cctcaagcaa cgttactaaa agtgggccaa atggtggtcc ttaaggagga      6060
     tggtgacgca acaattcagt ggcctcttgc ccgtataacc gaagtcttcc ctggtctcga      6120
     cggcgtgatt agggtagtga aggtacgcac gccaaatggt gcggtctaca agcgacaagc      6180
     atctcgagtt tgcttacttc cttttgagaa ggtcgtaacg agtccaccga aggaggcctg      6240
     agagacgaca tcgatgtgat ccccagggcc tcaacgaagt attgggtttg aattagatgt      6300
     cttagacgta agttttgcat tgtgtaagaa atgaattcgt aaattcctat tagaatttag      6360
     gtggccggca                                                             6370
//
ID   BEL-928_AA-LTR repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-928_AA-I;
KW   BEL-928_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-390
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-390
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4519-4519 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 390 BP; 105 A; 88 C; 78 G; 118 T; 1 other;
     tgttaggagt agtctcttta attttgtcct tcttgagcgt ccctaagtag aatagcataa        60
     aatgctcagg agaaactttg ctctctgacc cacacagggg tacactatca ggtgcactgc       120
     acacacgcaa aatgwggtcg gtcacctatc cctataactc catgccatgt atttttctgt       180
     atacacttta gtataaaata aaccatccat atgaacggtc gtcgtttcgc tcaacatttt       240
     cgtgcgtatt tctcgtctaa gacgtagttt tgtagaactc gcgaaggaat caccttttaa       300
     tcgaaccaca agattggtgc aaccaactcc tgtaacccaa ttgtgagttt tgtgtaggtg       360
     tctcggaagt cgttagtaag ggtccgaaca                                        390
//
ID   BEL-929_AA-I repbase;    DNA;    INV; 5630 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-929_;
KW   BEL-929_AA-I; BEL-929_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5630
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5630
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4552-4552 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 5630 BP; 1563 A; 1480 C; 1176 G; 1411 T; 0 other;
     ttggtccttc gaaccggatg tgcgttgaac tccgcgcatc cactgtgact tcttctcaaa        60
     tcgccatctt tcctgctctg gtttcacgtg cttaaagtgg gtcggaacta cccgttggaa       120
     ccctttcttc acctgcgtta cccactccgt tgctggaatt tgaatcatac aagacacaca       180
     attgcctttt caaaggtaat taccattcca atctctttat cctctcgcgt tttgtgcttc       240
     ctggtctttc gcttccagat cccgccatgt ctacggaacg tcgactgaat ggtttgaaga       300
     cccgccaaaa aagcctacta gcctcgttca gccaaataaa ggccttcatg gacgcctacc       360
     aggaatagac cgatgcatgc caagtacccg tccgactaga gcacttaatg tcattgtgga       420
     acgatttcaa tgcggttcaa gcggagctgg agtcgctgga tgagagtgac gtcgacaatc       480
     agctcaagaa gcgcatagaa ttcgagggcc actatttcaa ggtacatggt ttcttactct       540
     cggtgaataa aacccctacg ccgccgttga cgcctacgac ttctaattca actgtgcatg       600
     tccctgtttg tcctctcacg tgaggttacc cgatgtcaaa ttgccagtgt tcagcggaaa       660
     ccttgtcaat tggatgaatt ttcacgattt gtttgtctcg ttggtacatt cctcacatga       720
     actatctaat atacagaagt tctattatct ccgctcgtcg ctctccggag atgccttaaa       780
     gctcatccag acgattgcaa gaacggcaaa caactactta gttgcatgga gccttctaga       840
     agatcgctac caaaacccgg cgcggttaaa gaagtcctat gtggactcgc tgttcgaatt       900
     ctcatcactg aaacgtgaat cggcaacgga attacgatct ctcgttgaaa agtttgaagc       960
     gaactttaaa gtcctcaaac aactcggtga gaaaaccgaa ttctgggacg ttatcctcat      1020
     tagaatgctc agcattaggc tagacccaac tactagacga gactgggagg agttctcttc      1080
     gaagcaggct gcaatctcat tccaggatct cactgcattc atacagcgac gtgtgactgt      1140
     cctcgaaact atcggaaagt ccactgcatg ttcagcaatc aacaacccga agaagcccat      1200
     gcaacgcgcc attgtcagcc acggtgcctt ccagtctggc tccaggaagt gcgcaatctg      1260
     cgctgagcat catcctctgc accagtgcac cacgttttct aagctcgccg cggaagataa      1320
     ggaaaaggaa attcgccagc atcaactgtg tcggaattgc ttgagaaaag gtcatcaagc      1380
     tcgagattgt tcttcaacca gtagctgtcg acactgtcgt ggtcggcacc atttattact      1440
     ctgcaatggt aactccagct ccaacagctc aaagtcatca gacaacactc agccgaaaca      1500
     agaaccaacg aaatcttcca acgaacaacc ctctgtatcg ctatcggcta ctctcgaaaa      1560
     cgccccttgc tttgccgcaa ctcgatatca gcgaaaaact gttctgcttg caacagcgat      1620
     cataaagcta attgacgaca atggaacgga gcatctagct cgagccttac tcgactccgg      1680
     cagcgaatgt tgcttcatga cgcaatcgtt ctcgcaactc gttaaaggtc tgcgtcagaa      1740
     actttggtgc ccagttgttg gaattggtca atcaaccacc gaagctcgat acaaacttcg      1800
     atcaacaatc cgctctcgtg tgtgccagta ctccacttcg ttagattttc tcatcctacc      1860
     aaaggtcaac attgatctcc catccgcttc tattgacgcc tcttcttggg aaatcgcacc      1920
     tggaattgaa ctcgccgatc cgtcattcca tcaatccagc aaaatcgatg taatcctggg      1980
     tgcggagata tttttcgata tctttaaatt tgcaggcaga atccatctca gtgatgatca      2040
     accatccctg ataaattccg ttcttggctg cgttcttggt cagcgaaacc agttgtggcg      2100
     aacttggcca ctctcaacga tctccatcag cttatggaac gattttgatc cctcgaagac      2160
     gacagtacat gctactctgt cgaagaagcg gcgtgtgaaa atcattttca gcaaaatgtc      2220
     acacgcactt caaagagttg atactgtgtt cgtttaccat tgaaaccgga tattgtagcc      2280
     aagctcaccg atagtcgacg tactgcattg cgacgttttc atatgctgga aagccgactc      2340
     acacgtgacg tcactctcaa acaacaatat gatagcttca tggacgaata tgaaactcaa      2400
     cgtcacatgg aaaaagtgtt ccaccacgag aatccaccta cactgtggtg ttcgatgcat      2460
     catgtaaaac tccgggcggc ccatcgctaa acgatgctct catggtgggg cccgttgtac      2520
     agcaagacct tcgttcgatt gtaatgcgtt ccagaaccct accaatcatg ctgatagccg      2580
     atatcaagca aatgtatagg caaatcctcg tggacgaccg agacacccct ctccaacgca      2640
     tagtctggag aacttcccaa gatgaacccc tgcaaacgtt tgagttgaaa acggtgacgt      2700
     atggcacagc cagtgcccct tacttggcaa ctagagcact acagcaattg gccaacgacg      2760
     aaaaggaaaa ctttccaaag gctaccgaag tactcacaaa cgattttaac gtcgacgact      2820
     tattttctgg agccacctcc gcggaaaagg ccatcgaact ccgaaaccag ctagatacgc      2880
     ttcttcgcaa gggaggtttc gagcttcgca aatgggcgtc taatgttcca gtcgtgcttg      2940
     aagacgtccc tgcagacaat cgtgctcttc agtcctccat agacctgaac aaggatcagt      3000
     gccttaaagc actcggtttg cattgggagc ctgctacaga ttatttgcgg tatcgaatca      3060
     ccttagcgag cactacagac caacttctca caaagcgcat agccctatca cacattgctc      3120
     gactttttga tcctcttgga ttagtaggtc cagtggttac ttcggcaaaa cttttcatgc      3180
     agaacctgtg tacgctaaag gatgacgtcg gaaaatgctg gagctgggat caggagctgc      3240
     cctctgaggc taaaaagtac tggcagacat actactcgca actgaacctt ctaaatgacc      3300
     tacgaataga ccgctgtatt gtggtggaga atccaataac cattcaaata catctatttt      3360
     ccgatgcatc tgaactcgct tatggagcat gcgcttacct acgttccacc aacgccactg      3420
     gagttacaaa ggttgcacta ttgacagcca agtcaaaggt tgcaccatta aaaaggcaga      3480
     gcatcccttg tcttgaactg tgcggtgcct tacttgcggc acagctgtat gaaaaagtca      3540
     tggcatcgct tcaacttcgt accgaaacat tcttttaagt tgattctaca actgtaatta      3600
     gctagttgaa atatcctcca tcatcgtgga caacttttat tgccaataga gtttcaaaga      3660
     ttcaattggc aactgaagac tgcaaatgga atcatgtacc tggtcaacaa aatcctgcag      3720
     acctcatatc tcgaggtacc tcagcgaaat cacttctcca gagcaaaatc tggtggtccg      3780
     gtccagattg gctacaacac gaaatgaatt cttggccagc gtaagagaac atccctaatc      3840
     accaaactga aatcctcaaa gaaatgagaa aatcttcagt aactgcatgc atgacaacag      3900
     aaaaactttc tttcatcgac gaaatagcca acaagttctc ctcctaccgt cgcttaaccc      3960
     gtacagtcgc ctattgcaga cggttttcac aaaactgccg tttgcaacca aatgatcacc      4020
     aaataccgat atcctgaccc ctgcagaagt tgaggctgca gaaactgtac tcatatcgct      4080
     ggtgcagcaa caagaattca accacgaatg gcagtcacta catcaaggaa aacctgtttc      4140
     aacgacatca cggcttcgct ggtgtcatcc gttcttggcc catggaaaac atctccacgc      4200
     agcaccacag ctccttatca gtatacttcg tacccgatat tggctaatag gggccagaga      4260
     aatggccaag aggatcgtcc actcctgcat tccttgcttc agagcacgac cgaaagcact      4320
     ggagcagttc atgggccaac taccaccatc acgcgtcaac atggcacgac cattcgcaat      4380
     taccggtgtt gattattggg gtcccatctc cattcaacca ccgcaccggc gagctgcacc      4440
     aaggaaaaca tacgtggcgg tctttgtatg cttctgtacc aaggccgttc acctggaact      4500
     agtttgcgac ctcacaacag ccaaatttat tcaagctctt cgccgttttg ttgcccgccg      4560
     gggtttgtgt catgaaatct atattgataa cggcagaaac tttgtgggtg tggcgaatga      4620
     gttgcgaaac ctagtccgca gcaaagaaca caaacaatca ctagctgaag aatacaccga      4680
     aaacgggatt cggtggcatt tcaatccgcc taaagcgtcg cattttggcg gcctgtggga      4740
     ggcggcgata ttttctgccc agaagcactt caatcgcatc gtaggaccgc acaaacttgc      4800
     ttatgatgaa atggaaacac ttctctctca aattgaaagt tgcctcaact caaggcctat      4860
     tgcaccattg agcgacgatc catccgacta tgacccgtta acacccggtc acttccttat      4920
     tggcaccgca ttaaaagctg ttccacaagt agatttttct tcggttcctt acaatcggtt      4980
     acattactgg cagcacactc aaaagctgct tcaagacgtg tggaggcggt ggcagttgga      5040
     atacgtctct actcttcaac aacgaacaaa atgatacaaa ccaccggtca tcatcgaaaa      5100
     gggacgcctg gttctcttga agaatgaaga ttcaccaccg atgcactgga agacagctcg      5160
     aataattgaa ctacacccat gcatgatgga attacgaggg tggtaactct gcgaacacca      5220
     aatggaatct tcactcggcc ggtgtcaaag atttcactgc ttcccatcga atcaacactt      5280
     cccaaaccac tggtttcacc cagcaaagac acctcctccc acgacggaaa tcaacagaaa      5340
     caccgttcca gtaaaatgac ctgaaatgaa ataaatacaa ggcattttgt tggaacggac      5400
     aaggtgagaa cctgtcctaa ttagtaaatt ttctcaaatt ggtctaccct ggtctaccgg      5460
     gtcttttgtt tttgtttatt ctacaagcaa catcatcgat tgagcgtctg acgtctacga      5520
     cttgacaact gtgagctatc atcgatcatc gattctgccg agggagtgcc aattggttat      5580
     cgacgagatc aacgatgtgt cagaaattca actttctgaa ggggccagca                 5630
//
ID   BEL-929_AA-LTR repbase;    DNA;    INV; 520 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-929_AA-I;
KW   BEL-929_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-520
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-520
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4583-4583 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 520 BP; 169 A; 94 C; 112 G; 142 T; 3 other;
     tgttcgtaat gacgaattaa atcgatcatc gtgcgccacc tgtatgtgag cagttaaagt        60
     gtttaaattt tatgagatcc ctcgtccgtc aaacctcgat ggccgaagga agggataaaa       120
     cgcaatgagc ctttagactt ccgaggtatt ggctataaaa ggctcaacat gacagtgtga       180
     agaggtcttt tttgtaatct gccatcgaga cgtcaaattg tgccgcagtt gaagttgtta       240
     gcattagaag cttgaaatta tttaaattga aactaaatat watacctagt agttaawaca       300
     aacagtagtg aattaagtga aaacgaaaaa twtagtgaat tattgaactt acctgctgag       360
     tgtttaaagt gcatgctaga agaacatcat acttacctgg tgttgacaag cctgaaagga       420
     aattagttaa aaagaagatt ctactcacct gctttgccgt gaccgtgcac ccggaaagga       480
     aagtgctgga aattcccgct gcgaaccgct actatcacca                             520
//
ID   BEL-92_AA-I repbase;    DNA;    INV; 5834 BP.
XX
AC   supercont1.183;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-92_AA_;
KW   BEL-92_AA-LTR; BEL-92_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5834
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.183; Positions  915568  909735.
XX
CC   'CGAAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           10..5834
FT                 /product="BEL-92_AA-I_1p"
FT                 /translation="MNRQGPNLNSTEITDCNCAICKGPDHDDVGMVGCDNC
FT                 SQWFHFKCVGVSADVKDISWTCVNCKERPLVAAEDSGQAEPAAQPKVVPNQ
FT                 DAVPGAKPYTEKDPDAEVSAIEELERELEQIEEMRNEQMRRMELEKRVHRR
FT                 RLEVQRELAEQRQQMEREKRQIELEFEKEQLQKAISEEEAFRKKQQAMRDE
FT                 LQVNLDQLRIRQTGNPMQMKAICGPESSRPTVADDVVEIAAMPPAQTRDYR
FT                 GAYSKHSTPKGAEDSLSPVPPKEQFGAPGINEERNVAFDSEEDLPDVPSVS
FT                 QTSARTVRPTSAQLSARQFLAKKLPIFTGRSEDWPMFISSYETANEACGFS
FT                 NVENLARLQECLKGQALEAVRSRLLLPNAVPQIIDSLRMLYGRPEQLLNTL
FT                 LFKVRKAESPKADRLNTFISFGMIVQQLVDHLEATKLRDHLVNPMLIQELV
FT                 EKLPASTKMEWVRYKRQVVGVTLRTLSNFLTEIVRDASEATLFNDSPLPSR
FT                 MAQENRSNKKGKASKECYDGYVHTHDFAGSMSSGNKTVEFQQEKRTPCPMC
FT                 DRTDHRVRNCAEFRKLDPSTRLKAVEEWELCRICLNDHGKAKCKLNIVCKV
FT                 DNCGQRHNTLLHQSRSVLRSDCHTHTQVGLCQPVIFRMVAVTIYNGVREIN
FT                 TLAFLDGGSSYTLVESSLTDRLKIKGQTIPLRVTWTAGMTRLERESQQVHL
FT                 TLSARGSKEKYLIHNVHTVQSLKLPEQALRYAEMANQYGHLQNLPVVDYER
FT                 EPPKILIGLKHLHLFAPLESRIGKPGEPIAVRSKLGWTVYGSQTPEEVTSS
FT                 YVGYHSCDGVTNQELHDLLRSHYALEEPGVSVSLLPESSEDQRARKIMENT
FT                 TVKIGDRFQTGLLWKHDNPMFPDSYPMAQRRMKCLERRLTKDPDLKKNVET
FT                 QIVDYQHKGYCHKATKEELTGVDPEKVWYLPLNVVLNPKKPGKVRLVWDAA
FT                 AAVQGISLNSQLLKGPDFLTSLPSVICQFREHRIGFGGDIREMFHQVKIRP
FT                 EDRQAQRFLFSGQVFVMDCAIFGATCSPSQAMYVKDCNAKQWESMYPEASM
FT                 AVVKKHYVDDYFDSAHNIEEAVQRASEVRFIHSQAGFEIRNWVSNSEEFLQ
FT                 QLGETERSEAVHFNRDKSTETERVLGIVWNPVEDVFKFSTKIRDDLLPYLF
FT                 EGKRPTKRVVLSCVLSLFDPLGLLTPFTIYGRIFIQSLWRTGCEWDEMIDD
FT                 ESARKWALWISRLSVVESVKVPRYYFGDGLLLNYSSLQLHVFTDASECAYG
FT                 CVAYFRILAGGVPRCSLVQAKSKVAPLKPCTIPRLELMAAVLGARMVDTVK
FT                 ESHNLDIGKVFLWTDSRTVHSWIRSDLWRYKIFTALRVGDILNRTMASDWY
FT                 WIPTRLNVADELTKWNNGPQLEPDSRWFKGPSFLYQAEEMWPAQPEIKPNV
FT                 REELRTTFLFHDVKLAEPILEASRISKWSVLVRTVACVLRFISNLRRKRQG
FT                 QPIEVLPVTSKISCLVRKLVPFKRQALRREEFQEAERFLFKIAQGERFSAE
FT                 IRILQQSYSGKDLPKADKTSDLHKLTPVLDEFGILRHEGRTVEAEHLPFEV
FT                 RFPIVLPKKHPITIKLLEHFHQKFGHANRETVVNELRQRFYIPHIRAQLKK
FT                 VMQECVWCKVHKCRPKVPRMAPLPVQRITPNLRPFSFTGVDYFGPLIVTVG
FT                 RRAEKRWVSLFTCLTTRAIHLEVVHSLSSQSCVMAIRRFACRRGMPIEFFS
FT                 DNGTNFTDARTKWNFTPPSAPHMGGAWERLVRSVKEAMRVFDDGRKLTDEI
FT                 LLTTLADAEEMINTRPLTYIPQESAESESLTPNHFIRGLPSTGCDVFKSIV
FT                 GDADALRDNYKRSQWLANKMWKRWLVEYLPSINKRSKWHVDSEPIIEGEVV
FT                 FMADDENRKLWVRGVVEELIRSADGRVRQAMVRTTKGLYRRPVAKLAVPEI
FT                 RSVNSNLTASAKESRGGA"
XX
SQ   Sequence 5834 BP; 1710 A; 1219 C; 1515 G; 1390 T; 0 other;
     atctcaaaaa tgaatagaca aggacctaac ctcaacagta ccgagataac tgactgcaac        60
     tgtgctattt gcaaaggacc ggatcatgac gatgtcggta tggtgggatg tgacaactgt       120
     tcccagtggt tccatttcaa atgtgttgga gtttcagctg atgtgaagga catttcatgg       180
     acctgcgtta attgcaaaga gagaccttta gttgcagcag aagatagtgg tcaggccgag       240
     ccagctgctc aaccgaaagt agttccaaat caagatgcag tccccggagc aaagccgtat       300
     acggagaaag acccggacgc tgaagtgtcc gccattgaag aactggagcg ggaactagag       360
     caaatagagg aaatgcggaa cgaacaaatg cgcagaatgg agctggaaaa gagagtacat       420
     cgacggcggt tagaggtgca gcgcgaattg gccgaacaaa gacagcaaat ggaacgcgaa       480
     aaacgacaaa tcgagttgga gtttgaaaag gagcaactac aaaaagcgat ttccgaagaa       540
     gaggccttcc gtaagaaaca acaagcgatg cgagatgaac ttcaagtaaa tttagatcag       600
     ttgcgtattc gccaaacggg aaatcccatg cagatgaaag ctatttgcgg acctgaaagc       660
     tcgagaccaa cggtggcaga cgatgtggtt gaaatagcag caatgccacc agcgcagaca       720
     agagattacc gcggtgccta cagtaaacac tcaacgccga agggagcaga ggatagccta       780
     tcaccggttc caccgaagga acagtttggt gcgcccggaa ttaatgagga aagaaatgtc       840
     gcgtttgaca gcgaggaaga tttgcccgat gttccatcgg tttctcaaac ctcggctcga       900
     acggtaaggc caacaagtgc tcaactttca gctaggcagt ttcttgctaa aaagctgcct       960
     atattcacgg gtcgttcgga agattggccg atgtttatct cgagctacga gacagcgaac      1020
     gaggcctgtg gtttctctaa cgttgaaaac ctagctcgtc tacaggaatg tctgaaaggt      1080
     caagcgttag aggcagtccg cagtcgtcta ctgttgccaa atgcggtgcc gcagatcata      1140
     gactcgcttc gaatgttata tggccgtcca gaacagttac taaacacgtt attgttcaag      1200
     gtgcgaaaag cagaatcgcc aaaagcagat cgtttaaata ccttcatcag tttcggtatg      1260
     attgtgcagc agttggtcga tcacttagaa gcgacgaaat tgagagatca tttggtgaat      1320
     ccgatgttga ttcaggagtt ggtggagaaa ctaccggcta gtaccaaaat ggaatgggta      1380
     cggtacaaaa ggcaagtagt gggtgtgaca cttcgcactt tatcgaattt tctaacggaa      1440
     atagttcgag atgccagtga agcaacactg ttcaacgatt caccgctgcc gtctaggatg      1500
     gcacaagaga accgctccaa caagaaggga aaggcaagca aagaatgtta cgacggttat      1560
     gttcatacgc acgatttcgc aggaagcatg agtagtggca acaagactgt ggaatttcaa      1620
     caagagaaaa gaacaccatg tccgatgtgt gacagaactg atcacagagt ccggaattgt      1680
     gcggaatttc gtaagttgga tccatctact cgcctgaaag ctgtagaaga atgggaacta      1740
     tgtcggattt gtctcaatga ccacggtaag gcaaaatgca agctcaatat cgtttgtaaa      1800
     gtagataatt gtggccaacg acacaatacg cttctacatc agtcccgatc ggtgcttcgt      1860
     tctgattgcc acacgcacac gcaggtcggt ttgtgtcagc cggtaatatt tcgtatggta      1920
     gcggtgacca tttacaacgg cgtacgtgaa atcaacacgc ttgcgttctt ggacggaggc      1980
     tcgtcctaca cactggtaga aagttctctg acggacagat tgaaaattaa gggacaaact      2040
     ataccactcc gggtaacatg gacagctggt atgaccagac ttgaaagaga gtctcagcag      2100
     gttcatctaa cgttgtctgc acgaggatcg aaagagaagt acctgatcca taatgtacac      2160
     acagtgcaat ctttgaaact tccagaacaa gcgttgcgtt atgctgaaat ggccaaccag      2220
     tacggacatc ttcaaaatct accggtggta gactatgaaa gagagccacc gaagattctc      2280
     attggcctaa aacaccttca tctgtttgct ccactggagt cgcgaattgg caaaccagga      2340
     gaaccaattg ccgtaaggtc gaaactagga tggacggtat acggatctca aactcccgag      2400
     gaagtaacgt cgtcttatgt tggttatcat tcatgcgatg gcgtgaccaa tcaagaacta      2460
     cacgatctgt tacgatcgca ttacgctttg gaggaacccg gtgtttcggt gagtttgtta      2520
     ccagagtcgt ccgaagatca acgagcccga aagattatgg agaacacgac tgtaaagata      2580
     ggagatcggt tccaaacggg actgctatgg aaacatgata atccaatgtt ccctgacagt      2640
     tacccgatgg cacaacggcg aatgaaatgt ttagaaagaa gactaaccaa ggacccagat      2700
     ttgaaaaaga atgtcgaaac gcagattgtt gactatcagc acaagggtta ttgccacaaa      2760
     gctacgaaag aagaacttac cggcgtcgat cccgaaaagg tgtggtactt accactgaat      2820
     gttgtactca accccaaaaa gccgggtaaa gttcgtttag tgtgggatgc tgcggctgct      2880
     gtgcaaggaa tttcgctcaa ttcgcagttg cttaaaggac cagatttcct cacgtcactt      2940
     ccatcagtaa tctgccagtt tcgggagcat cgtattgggt tcggtggtga tatccgagag      3000
     atgtttcacc aggtgaaaat taggccagaa gacagacaag cacagcgatt tctgttctct      3060
     ggacaggtgt ttgtaatgga ttgtgccata tttggcgcta catgctcacc cagtcaagcg      3120
     atgtacgtga aagattgtaa tgctaaacag tgggagtcaa tgtacccaga agcgtccatg      3180
     gcagtggtta aaaagcacta tgtggacgac tattttgata gtgcgcataa tattgaggag      3240
     gcagtccaac gcgctagtga agtacggttc atacattccc aggcaggctt cgaaataaga      3300
     aactgggtat ccaattcaga ggaatttttg caacagcttg gcgaaacaga aaggagtgaa      3360
     gcagtacatt tcaacagaga caaatcaacg gaaacagaac gagttctggg tattgtctgg      3420
     aatccagtag aagatgtgtt taagttctct acaaaaataa gagatgatct gctaccgtat      3480
     ctatttgaag gtaaaaggcc aactaagcgt gttgtactca gctgcgtttt gagcttgttc      3540
     gatccgttag gacttctgac accattcacg atctacggca gaatcttcat tcaaagctta      3600
     tggagaacag gatgtgagtg ggacgaaatg atagatgacg aatcggcacg aaagtgggcg      3660
     ttatggatca gccgtctgtc agtggtagaa tccgtaaaag ttcctcgtta ctacttcggt      3720
     gacggtctgt tgttaaacta cagttccctg caattgcacg tattcacaga tgccagtgag      3780
     tgcgcttatg gttgtgtcgc gtattttagg attctggccg gcggagttcc cagatgttca      3840
     ttagtgcaag cgaaatcaaa agtggctcca ttaaagccat gtactattcc acgattagag      3900
     cttatggcag cagtactagg agcccgaatg gtagatacgg tcaaggagag ccacaatttg      3960
     gacattggga aggtgtttct gtggactgat tcacgcacgg ttcactcgtg gattagatcg      4020
     gatttgtggc gctacaagat tttcaccgca ttgcgtgtag gtgacatttt gaatcgtact      4080
     atggcttcgg attggtattg gataccgaca cggcttaatg tagcagatga attgacgaaa      4140
     tggaacaacg gtccgcaact agagccagac agtcgatggt ttaaaggacc atcgtttttg      4200
     taccaagcag aggaaatgtg gccggcacag ccagagatca agcccaacgt acgtgaagaa      4260
     cttcgcacaa cgtttctgtt tcacgacgtg aagttagcag aaccaatttt ggaagcgtcg      4320
     agaatatcta aatggagtgt cttggttaga acggtggcgt gtgttttacg tttcatctca      4380
     aatcttcgta gaaaacggca ggggcagccg attgaagttc taccggtaac tagcaagatt      4440
     agctgtcttg tcagaaaatt ggttccgttt aaaaggcaag cattgagaag agaggaattc      4500
     caagaagctg aacgttttct ttttaaaatt gcacaaggtg agcgattttc agccgagatc      4560
     cgtattctcc agcaaagtta cagtggcaag gatctgccga aggcagacaa gactagtgac      4620
     ctccataaac ttaccccagt tctcgacgaa tttgggatac ttcgtcacga ggggcgaaca      4680
     gtggaagctg agcatcttcc cttcgaagtg cgattcccga ttgttctgcc aaagaagcac      4740
     ccgattacga tcaagctgtt ggaacacttt catcagaaat ttggccatgc aaatcgagaa      4800
     acagtggtaa atgaattgag gcaaagattt tacatcccac acatcagagc tcaactgaaa      4860
     aaggtgatgc aagagtgcgt gtggtgcaaa gtacacaaat gtcgcccgaa ggttcctcga      4920
     atggcaccac ttcctgtcca acgtataact ccaaatttgc gtccgttcag cttcactggt      4980
     gtggattact ttggtccact gatagttaca gttggtcgtc gtgcagagaa gcggtgggta      5040
     tcgttattca cctgcttgac aaccagggct atacacttgg aagttgtgca tagtttgtct      5100
     tcacaaagct gcgtcatggc catccgtcgc ttcgcatgcc gacgaggtat gccgatagag      5160
     tttttttcgg acaacggaac caacttcact gatgccagga ctaaatggaa ctttactcca      5220
     ccaagtgcac cgcatatggg cggagcttgg gaaaggttag tgcgttcagt aaaagaggcg      5280
     atgcgtgtgt tcgatgacgg gcggaaatta acagacgaga ttctactgac gactttggca      5340
     gacgcggaag aaatgataaa cacacgtccg ctaacataca tccctcaaga gtcggcagaa      5400
     tctgaatcgc tcaccccgaa ccacttcatt cgaggacttc cgtcgactgg ttgcgacgta      5460
     ttcaaatcaa tagttggaga tgctgacgct ttacgtgata actacaagcg gtctcaatgg      5520
     ttagcaaaca agatgtggaa gcgttggctg gtagaatacc ttccctcgat aaacaagcgg      5580
     tcaaagtggc atgtagactc ggaaccgatt attgagggag aagtcgtttt tatggctgat      5640
     gatgaaaatc gcaagctttg ggtacgagga gtcgtagaag agctgattcg tagtgctgat      5700
     ggacgtgttc gacaagcgat ggtacgtacg acgaaaggtt tgtaccgtcg gccagtggca      5760
     aaactagcgg taccagagat tcgttcggtg aactctaact tgacggcgtc tgcgaaagag      5820
     tcacggggag gggc                                                        5834
//
ID   BEL-92_AA-LTR repbase;    DNA;    INV; 587 BP.
XX
AC   supercont1.183;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-92_AA_;
KW   BEL-92_AA-I; BEL-92_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-587
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.183; Positions  909734  909148.
XX
SQ   Sequence 587 BP; 216 A; 95 C; 116 G; 160 T; 0 other;
     tgttgaggca ccgttcactg gcaacacggc ccaggcgcac tatcacagta acatagaaca        60
     aatcgaacaa ccttagaaac cgagagatag atagggatta gaaccaaaac aaaaccttca       120
     ataacagtga attgtcgaat ctatcattgc catgcagttt ttgctattaa agtgaatata       180
     atttgaaaat atactttttt gttaaatcgc gcattatacg aagttgtact tcgacattta       240
     aagcctcaaa cgtaagtgta gaactgaaat tattagacat tctttaatat cgatgtagtt       300
     atccaggttg tcaccaatag tgcacgtatt tcatcattag tgggaacaaa cgtatctgaa       360
     ttattctgac tgcatctaat acagagagga aggaaacctc agtaaaagga ggaaaaggtt       420
     cttggatatt aaggaagagg aggattggtt gaaggaagga agctattcat gtaagtgaag       480
     taattgttat atgattctga aagataatta aataaacaat cgttacagtt ttgagctgct       540
     aaaaccataa aagagctgct tcaagaaaat agtgacccac ccgaaca                     587
//
ID   BEL-930_AA-I repbase;    DNA;    INV; 3356 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-930_;
KW   BEL-930_AA-I; BEL-930_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3356
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3356
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4553-4553 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 3356 BP; 920 A; 955 C; 631 G; 850 T; 0 other;
     tatggtcctt cgagccggat ctcggtcgtc gaactccgtc cgttccggtg cttcccgctc        60
     agaaaccaat cgccattgct gataccacac ctacgtccga cccgccatca tagagttcgc       120
     tgagatcgcc gttgctgaac gccgccatag ctgagatacg aatacaaggc actgaactgc       180
     cttatttaag gtaattagcg ttccattaac agtgcacttt ctcctttgag ctacgcggtc       240
     tttcgcttta cagaccccgc tcaccttcaa cccgtgatct acttctactc tatcaacgtc       300
     cgtcccgtcc ggagatcctc cggagaattt ccgccagcct ttagacacca gcagtgtcaa       360
     cggaatctgt tatacaaggc atagctttgc cttttcaaag gtaattagat ttcctatccg       420
     tcctactctt tctcgtgtga tctgcgcggt ctttcgcttt gcagaccgct cctcatcaac       480
     atgtccacgg aacgtcgcat caagggccta aagaccagaa taaggagcct ccttgcctct       540
     ttcaacatca tcaaggcatt cgttgacgaa tatgaggaag aaacagatgc atgtgaagtt       600
     ccagtgcgcc tagagaacct taacaaactc tggatagaca ttcaaaaggc tcagtccgag       660
     ctggaatcca tcgatgagaa ctccgtcgat gaacaaatca aagaacggat cgactttgaa       720
     accgcctact accgagtgaa aggtgtgctt ctcgcgatca ataaacaccc agtaaattct       780
     tccgtccaag cgtcaccttc ttcaagctcg caaatccctg tcccgtcttc gcacatacgc       840
     ttacccgacg tcaaacttcc tgtgttcaac ggaaacatcg acacctggtt gaatttccat       900
     gacctcttcg tctcactggt gcactcttcc gtcgagttgt cgaatatcca aaaattctat       960
     tatcttcgct catccttggc tggggaagca cttaagctag ttcaatctat cactatcagc      1020
     gcaaacaact atctcgtcgc ttggaatttg ttggaagagc attaccaaaa cccttcacgt      1080
     cttaagcaga cgtatctaga tgccctgttt gaattcacca gtctgaaacg tgagtcagca      1140
     gccgatctac actcactcgt agagaatttt gaggccaacg tcaaggtgtt gaagcaactc      1200
     ggagagagga ctgaatactg ggatgccatc ctcatccgca tgcttagcgt tcgtttagat      1260
     gctactactc gccgagactg ggaagaattt tcatccactc aacaagccgt aaccttcaag      1320
     gacctcacct cgttcatcca gcgaagagtc tcagtacttc aaacgataca aaggaatgtt      1380
     gtcgacactc cagcattcat gcaaccttcg aagaaaactc cccaacgtcc gctcgcctgt      1440
     catagcgcta atcaaactac atatcaacgg aaatgcgttt tatgcactga ccaccatccg      1500
     ctatacatgt gtgaaggttt ttcgcaactc tcgctcgagg agaaagaagc cgaggtacgt      1560
     cgccatcagc tttgtagaaa ttgtttgcga aagggtcatc actcgaagga ttgtacctcg      1620
     tcatccaact gccgtcgatg tcaagcacgc caccacactc agctatgtcc gaattctgca      1680
     ccatcggaac cacattcgat cagttcccaa ccatcaacct cagttgtact tgcgcaatca      1740
     ggcgaatctc ccatcacttc tgcatgtgca accgtcaacg agtccgtcag ctgtgcctcc      1800
     gcaagctgca cccagaaaag agtccttctt gctaccgctg tcatcttcat catagacgac      1860
     gatggtacaa aacatactgc tcgcgctcta ctcgattcag ggagtgaatg ttcattcata      1920
     accgaacgtt atgctcaacg cattaaggct cagcgaaaaa gaatttgtct accaatcagc      1980
     ggaatcggtc aaacaaccac taaagcgaca gcaaaatttc ttgcctgcgt gcgctctcga      2040
     attggcgaat actctactaa cgtcgagttt gttgtcctac cagaagttac catcgatctt      2100
     cctgccactt ccatcgatat ctcatcttgg aatatgccac ccggcattca cctagccgac      2160
     ccttcattct acaatactag ccaagtagat gtcgtcatcg gagcagatat ctttttcgag      2220
     cttttccgag taccaggtcg tattccactc ggggaaaacc taccagagct cgttaactca      2280
     actcttggtt ggatagtttg tggaaaggca gatgtcaact cttcgacacc tgtcgtggtt      2340
     cattttgcaa cagtcacagc gcactcattc acaactcaca agcacccttt tcaatcgtcg      2400
     cagacactca atgtacaaca ttcagaaaag caacatcgcc agctccacag tcaaccgaaa      2460
     agcaactctc atcaacctaa attgattgcg gatactcaaa ctccaaggtc tatttcttcc      2520
     catgcactcg atgtaaactc tcataatgtc gcgagtcccg cacagcaatc tgcaattgca      2580
     cctaagttgc aactcaatca cccacgctcg tctatctcaa cgattgcatt cgaaagccat      2640
     cacgctgcat ccaatcagtg gcagaatcat tcccgatcaa cactctacca atcgctccag      2700
     aggtcaaatt catcagtgga gtcagctcac aggggccaga agatgcaaaa tattcgttcc      2760
     attcaacctt ggccatgtca atcagttgga catacaacta ctcttcaatg aatcacaccc      2820
     aattcagaaa aaccatcaat ggaccaccaa tttgtaatac tgttggcaca aggaatcgac      2880
     gtccattaca tcaagcatcc gtcatcaaca tcaaaattcg catcgtttcc gtcgcaatca      2940
     tcggtgctac acttcgttca tcgtcaacaa tcgaatgttc caccatccac gctgatatca      3000
     ggcatacaaa atcaccatga gttcaccatc gcttctctcc tcaaccaatc gatattccag      3060
     cagctgaatc ttatccggca acacctaaaa tgaaatcaag ggcgttaata attagtggat      3120
     caggtaagaa cctgtccaaa tccatatttt tgtcgtaaac cgctaccggg tcttatctct      3180
     ttgcatgttt actcgcaaca atcatcttcg tcgtcaatcg tcgagatcga tcccgaaccg      3240
     agacaagagg caacgaatgt tgacagctga tacccgttca tcatcttttc gtcgatatca      3300
     ccgaagacag ctcaactcag aaactgtcag aaatgcgatt tctgaagggg ccagta          3356
//
ID   BEL-930_AA-LTR repbase;    DNA;    INV; 534 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.08, Created)
DT   11-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-930_AA-I;
KW   BEL-930_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-534
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-534
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4584-4584 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 534 BP; 164 A; 110 C; 116 G; 144 T; 0 other;
     tgttcgcata cgcgaagagg gtctacgcga cgtgtatggg tggcttgatg agcaccgata        60
     gcatcaacca tcatctttca tcgataatgg atccctgcag aaacttgcgt ttttgaccat       120
     ctcgctctat ccggtcaacc atgtttatgg tggagcgacc cattataaaa gccgaagaag       180
     aatcgtgttc ggtctctttt tacgacgaca actcgacacc gactacaacc atcatcatca       240
     gcaaacgaga gtgaacagtt tcccacccac tagaggtgaa tttcgttatt ttgaattatc       300
     agtgctaagt tacgtagttt ttaagtcaaa ttaaattaaa ccaagttagt aaaataaagt       360
     gcatttgaac tcaataaact tacctgtgtg aaagtgaacc ctggtgtacc tgtaagaaaa       420
     agaaaggaaa agaaacgttg gacttacctg cagttgagaa ttgtgtcccc gtcgtgcggt       480
     gtggtgaaca gaaaattagc acagaatcgc gtttcaagct gagttaatcg taca             534
//
ID   BEL-931_AA-I repbase;    DNA;    INV; 5734 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-931_;
KW   BEL-931_AA-I; BEL-931_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5734
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5734
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4554-4554 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 5734 BP; 1661 A; 1284 C; 1371 G; 1403 T; 15 other;
     ttttggtcct tacccgaacc ggattgttac ggaaaatcgt cggaaaagtt ccgcgaacaa        60
     tttttcaaag ctwtcgccga aaacaaacgg ttccgcgagt gaattggatt cctaccgcgt       120
     atccataagc ttcggaaaat aagtgacata accccgtttt gctgattcca tgagggaatc       180
     acactcgcgt cgactttcga gaaagttcga ccttgttgcg gagttagaag aaagcgtcgc       240
     ttccttgaag gccgaccgaa gaaacccagc gttcaggagc tggtagaaag agacgggtga       300
     actatgtgaa aatccagttg aagctggtag tgcaagtgtg gaattggtta ccacaaacca       360
     ttatcgactg agccgaagat agtgggacaa tagtgcagtg atatagccca aaaaagaatg       420
     tcagataacg aagatacgga tttggaggat acgggtgcta gtggcactac acgaaaagtc       480
     gtgcattctc caatagcagc acaaaaagaa aagtggctac aaaaacagca gtcacagctt       540
     tcttataaga acatggaagg attcatggct agacgacaag cagtagcggg gaagctggaa       600
     cgtatatcag gcttgctgca acaagaacag cattctacag tgcatcacct agatacgttt       660
     ctcaagcgag tggattcgtg ctacgacgag ttcaatttga tccaaaacga tgtttacact       720
     cagttccctg acaaacgtga agagcaagaa gaatttttca tcgagtttga atccatctac       780
     gaaaatattc gtgtgcaaat ctgcagtaag atggaaaact tacgtttagg gcgagatgta       840
     acacaaatat caagtcatcc tccagtcgtt gagcaacagc caggactacc tcacgtgccg       900
     ctccccacgt ttgatggcac atacgagcga tggttccggt ttaagcaatt gtttctggac       960
     cttatgggaa aatatccgtc attatcgagt gcgacgaagt tgcattatct gacccaatcg      1020
     ttgaaaggaa aggcggaaaa tatgttcagt gaccaagtac tcaacgaaaa taattttgat      1080
     gcagcgtgga accagctggt gcmacgattt gagaacaagc gcacgattgt cgacatccac      1140
     gtcaacggac tcctgaatct caagaaagtt accaaggaga gttcagtcga acttcgtcag      1200
     ctggtggagg aatgtagccg tcatgtagaa gcactcgagt tccaggatca aaaaatgctg      1260
     ggtatgtcgg aacaactaat cgtgtcgcta gtcacatcga agctggataa gtctacacac      1320
     agtatgtggg aaaacagtct wccaccgaag agcctaccat cttacaacgc aacaatagac      1380
     tttttacgta atcgttgttt cgtcttggag agatgcgagg ccaacagctc gaccaaaccg      1440
     agtgaaacga agttcaaggc actacctccg acccccaaat cgccatatcc gagctccaag      1500
     ccaccgctca aggtatatac agctcaacat gtatcagaag aagtctgcgt tgtttgcagt      1560
     gaacagcaca acgttaccaa atgtaacgtg atgaaacgtg atgaaaaagt cattacctga      1620
     acgattgacg acggtaaagg agaagcaact gtgttttaac tgtctaaagc taggacacag      1680
     ggtcgcacaa tgtaaatcac ggatgtgtac gataagcggc tgcgggaaga agcatcacac      1740
     gttgcttcat gcggaggatg ccaatcattg agaagcctat tgtcgttgat tctactagtg      1800
     gaaaagagca aaggaaagaa gaagcctcaa ccccctcagg tccgtctatc gtatgcagca      1860
     acatctcgtc acagcagatc atwttgtcaa cggcactagt cagtgtgaag gattttcggg      1920
     gagagtacca cccatgtagg gtgcttctcg actcaggctc gcagtcgaat ttcctttcag      1980
     agcagttcgc aaagcagttg cagctcaaat gtgatttcgt agcggtccct attgtcggca      2040
     tttcaggaga taagcaaacc gttacccgcc gcacgtctgc tagcatcaag tcactgcagc      2100
     gtgacgggcc ttggatcttg gatttcctag tagtgcccca tgttacagga atccttccgg      2160
     caagcaaaat cgacgttcgt gactggaaca taccggaaca tcttccccta gcggacccta      2220
     cgttcaatct gccagcaagg gtagacatgc ttctaggagc ggagcttttc ttcgaattac      2280
     tttgcactga ccgtttcaag ctggccgaaa atctaccaat tctttgggaa actaagctcg      2340
     gatggatagt atgtggatca cacgatgctg ttcgacgacc gacattagta gcggctactt      2400
     gtcaggaagc agaagggaaa ctcgacgctc tggttaaacg attttgggaw caagaagagt      2460
     tattggasgc gaccactsta accacagaaa gccaaaagtg tatcsagcat ttcacagcga      2520
     cacatcgccg cgagaatggt cgttttgttg tacgcttgcc tttccgtagc accgttagtg      2580
     aactaggtaa ttcgcaagcc cttgccgaga gacgctttct tcatactgaa aggaaactgg      2640
     tgcaaaatcc tgaattgaga gcacagtaca ttgcttttat caatgaatac cgcagcctag      2700
     gacactgtgt aatcgttaat cctagcgatg aaagtggatt ctatcttccc catcatgcca      2760
     tcgtcaagcc ttccagttcg accacaaaat tacgcgttgt tttcgatgca tcggcgcgat      2820
     cggaatctgg atattcwttg aacgatgtat tagttwctgg ccccgtcgtt caggacaccc      2880
     taatggcgat cgtactacgt ttccggagac ataagtatgt gttcacttcg gatatcaaaa      2940
     aaatgtatcg ccaagtgcgc gtcgatgacc gggatacggt gtaccaaaga atcatatggc      3000
     gtgaagatcc tcgagatgac ctgcgaactt tggaattaaa aactgtgacg tatgggatgt      3060
     catgcgctcc cttttgcgcc acagcatgtc tccagcagtt ggctcaagac gaagaagaag      3120
     aatttcctct agctgcgccg gtagtgaaga aagckaccta tatagatgac gtccttgctg      3180
     gttccgatga tattcgmgaa gctttggagt gtcaagcaca actaatagct cttctacagc      3240
     gcggtggttt tgaactacac aagtggtgtg ccaatgattt acgtctcctt gagcacatcc      3300
     ctgaagaaga cagagagwta caagcgcgga tcgatgacca cagcttcaat ggcgtcgtca      3360
     aaaccctcgg tctgttttgg gatccatcga aagatgtttt cctgttccac gtgcaaccgg      3420
     acgaagataa tctacaatac catacaaaac gaactgtatt gtcagctact gcaagaatct      3480
     tcgatccgct cggcttgcta agcccggtta tagtagtgct gaagatattt tgtcaagagc      3540
     tatgggcaca aggtttggga tgggatgagc ctcttcccat tcctatggag aaacaatgga      3600
     aacaattgaa aattgatctt cgtcacatca atgatcttga aatccctcgc cgagttgtaa      3660
     ccgaccaagc gacgtcaaca gaaattcatg gattttcaga tgctagccaa aaagcttttg      3720
     ctgcttgcgt cttcatgcgg agtttaaaca aggatggcac tgcagaaatg aaactactgg      3780
     gcagcaaaac acgggttgca ccgttgccta agaaacctgg aaacaaaaag tctggcaaac      3840
     cgtttaccat tcctcgagca gaactgtgtg gggcgttgct attagccaga ttagtgacaa      3900
     ctgtgcttga caatatgaac gttgaagtcg aatctgttgt tctctggtgt gattcgcaaa      3960
     ttgtactttg ctggcttaac aagtctccaa gcagtttgga aatatttgtc ggtaccagag      4020
     tgcatgaaat tcaacaattg acgaagcaat ttcagtggag atacatcact aaattcaatc      4080
     ctgccgatca agcttctcgt gggatcacaa ctgcagaatt agcgaaatct ggactctggt      4140
     ggtctggccc atctatgttg cacgaagtaa gttacacgta cgaggaaaac gaggaccatg      4200
     aatttacgag tgcagagttg gaactacggc cagcgcattc taacgttgca atgaagatgg      4260
     ttcagtgggg tatgctctca aagttcagcg acttcaagaa gsttcagcga gtgtttgctt      4320
     gggcggttag atttgcaaag aactgtcgca tccgggataa ggacaaacgc attatcggac      4380
     cactgaaaat ttcggagcta cgagctgcaa ctaaatggat catttctgaa gtacaaggtg      4440
     aaggttttaa ggacgagatt caagatgctc gaaaaagcaa attactacga ttggcgccat      4500
     ttttggacga tgagggatta ttgcgagtcg gtgggcgtct caagaatgca agtatttcgt      4560
     acggtcacag gcatcaactt ctcttgccgc agcgacatca cgtcactaag attattatag      4620
     aatccttgca caaggaccat ctccacatcg gacaacaagc gttattggcc attgttcgtc      4680
     agcgatactg gccagttcgt gcaagagaca ccattcgaca gatagtacac aattgtatcc      4740
     gctgcttcag ggcgaatcca cccatcatcg aacaatatat gggtgattta ccctatgccg      4800
     gtccgttctc cattcgacag ggcgtacgtg acgcaackaa gattaaagca tatgtagcac      4860
     tcttcatttg tttgagcaca aaagctattc atttggagct agtatccaat ctctctacag      4920
     aagcttttct ggcggccttg caacgcttcg ttggccgacg tggagtacct gaattattga      4980
     tgtcggacaa tgctacaaat ttcaggggag ctagtaatga actacatcag ctgtacgagt      5040
     tattccactc caacgaagcc acaaacgcca tcgaacaata ttgtgcatcc aaggaaattc      5100
     aatggtcatt tattccacca cgaactccta acttcggagg gatttgggaa gcgggagtaa      5160
     aggctgccaa gaatcgcttg aagatggtcc tgcccatgct tctgtaaatt ttgaggaaat      5220
     gacaactgtg ttagtacaag tggaggccat actcaactca agaccattaa cacaaatttc      5280
     taatgatcca aatgactata cggcattaac acccgcgcat tttttggtgg gaagggaatt      5340
     gacggcagtc ccagagcccg gatatgaatc tttcagagtt tcatccctca cacgctggca      5400
     gcatctccaa aaactaaagc aggatttctg ggcaaggtgg tctgcagaat acctttgcga      5460
     actgcaactt cgaggaaagt ggttcaaggg aaagctgatg ttgaagcccg gtatgctggt      5520
     ggtcatgcgt gaggataaca tgcctccaca acagtggaag ctcggacgta tttctaagct      5580
     tcatccagga tcagatcaca taacccgggt ggtgacgatc aagacatcca acggagagtt      5640
     cactcgtggc atcagcaaaa ttgcaattct tcctatggag tgtgaggata ttcccaacac      5700
     ccaatattga cagggatggt caacgcgggg agaa                                  5734
//
ID   BEL-931_AA-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-931_AA-I;
KW   BEL-931_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-184
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-184
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4585-4585 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 184 BP; 51 A; 40 C; 31 G; 62 T; 0 other;
     tgttcaggat tttgaagaac gtgacttgcc cccactataa atcactcacc tatgcttttg        60
     tgaatttacc accattttgt tttctttgca tcagatcata ataaaaaagc accaacgaga       120
     gaagtggacg tgttttagtt tttcgcattg aaaccgactc cattgatctt ctcgtttacg       180
     gaca                                                                    184
//
ID   BEL-932_AA-I repbase;    DNA;    INV; 2566 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-932_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2566
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2566
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 2566 BP; 825 A; 485 C; 683 G; 573 T; 0 other;
     ttcttgaaaa ttttatgatg tcgcagtcga ttcaggatcc tgaaaagaca ggttttaact        60
     gcgcgggatg ccatcagccg gatgatgatg aaagcgagaa gatattttgt gaccattgtc       120
     agcggtggta ccacttcgga tgcgctggtg tatcggccga cgcaagagac gtttcgtggt       180
     cctgcgaaga atgtctacgc ctatcggcgg acaaagaggg gccacccgac ctggaagagg       240
     agctggaaat gctcgagcag cagatggtga aggaaagaca ggccatcgaa ttagaaacaa       300
     ttattcataa gagaaagctg gagcatcaga ggagcctgtt cctgctacgt cagcaggccg       360
     agaaagaaaa gcgcgaaatg gagttggcgt acgagcagga gcggttggag ctgctagttg       420
     ccgaggaaga agcgtatcag aagaaacgtg ggaaagtgtt gaagcacgtg caagaaaaat       480
     tggaaaaagt ggagcgcgag tcggcaagga tggaattatt agcaaaaaat atagatgagg       540
     gaaaatttgg atggagcagt agacgcaagg aatatggcaa aaaaatcacg tcaattaagt       600
     cgacgatgga gaagcttcat gaaaagaagt cggaaaggtg caaatcagtc cggaaaacaa       660
     ttggaccggt gaaggtgcct cacgacggtg ataacgagag aaatatgaac cataataata       720
     agaagaagaa gaaaaagaag aagaaacagc agaacgtcta ttgcgaagac aaatatcaag       780
     attcaacaaa cacgtcaagc gaagaaaacg aagaggattt cgaagaatcg gaagatgaaa       840
     gttcgtcgca aggcgaagat agtgggaaac ctgaaaattc agtaatgcgt tccaaaagca       900
     ccacacgacg tcctacgaag gctcaacttt ccgctcgaca gtttctctcg aaaaagcttc       960
     cgacttttaa cggacggcat gaggagtggc ctctgtttat tagtgcctac gagacatcca      1020
     ctgcagcttg cggattttca aatgtcgaaa atctggctcg acttcaagag tgtttgaagg      1080
     gtcaagcact ggaaacagtg agaagcaggc tacttcttcc gagtgcagtg ccgcagattg      1140
     tcgaaacctt acggatgctg tacggcaggc cggaacagct gctgaacatg ttattggcaa      1200
     acgtgaggaa ggcaccaccc ccaaaagcgg acaaattagc ttcgtatatt cagtacggag      1260
     tcgttgttca agagctgacg gatcatttgg aggcgacagg tctgacagcg catctgataa      1320
     atccaatgct aatccaggaa ctgacggaaa agctgccagc caacatgcaa ttagaatggg      1380
     tgcggtatcg tagaaaaaca cagaatgtga ctctgcgaac tctgtccaaa tttctctcga      1440
     gactcgttaa ggatgctagc gaaattactt cgtactccca agtagcatct agcgaatcag      1500
     atgaagagtt tctaaatttg gggaggaaag aacaagaaga atttcgagag ggattcctac      1560
     acacacacat caccgaagaa aatatagttg gaaatcaaca atcctacagg aatagaacag      1620
     cttgcaggat atgtggtcgc tttgatcatc gagttcgaaa ctgtagagtc tttaagagac      1680
     taagtctaac agaaagatgg gaggcagtgc ggaaatggaa gctatgttat ttgtgcttga      1740
     atgcgcatgg aggatttcca tgcaaactga actttcggtg taacgttgat cagtgtaatg      1800
     aagatcacaa tacgctgcta cacatcgggt acactcatcg cacagattgc aagcagtcgg      1860
     tgatttttcg tacgattcca gttactttac gcagcggtga tcgtgctgtc gatacaatcg      1920
     cttttttgga cgaaggatca tcgcatacgt tggtggaaaa gtcattggca aacatattag      1980
     aggctaaagg ggttatgcag caacttcgag ttacttggac agctggtatg acaagatggg      2040
     aaaacgattc gagaaggttg gaattgtgga tttcggcaat aggatcgtct cagcgtttcc      2100
     gcattggcgc cgcccatacc gtggatagtt taaagctacc tcaacaaact gctacaatgc      2160
     atgaggtcag ccacaaatac tctcatctgc gagagcttca aggaacagaa tttaagcaag      2220
     gagttccaca aatacttatt ggtctaaaag acattcatct gtgcgcccct ctcgagtcca      2280
     taatcggtaa accaaatgaa ccgattgccg tgagatcgaa gcttgggtgg tcagtttatg      2340
     gaccttcgtg tacatgcgta tgatgaagtc tagaaaattg agagaatgtg acaagatgca      2400
     gtactttggt caggagcatg aggtaagcaa gtgatcgaaa caaaaaagag atcatgtttt      2460
     cgctaaatag caaggcaagt ggaaaaccac tttggtggtg cttgacattc aaaattgtaa      2520
     ctctagcgat aaagagggtt ttcagctaga attacggggg ggagga                     2566
//
ID   BEL-932_AA-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-932_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-502
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-502
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4586-4586 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 502 BP; 190 A; 63 C; 116 G; 133 T; 0 other;
     tgttcgcacc acaatagatc gaaaaaccct gcgcttttcg catctgctga tggtagctga        60
     agtaggcgaa atgtttggtg tttgagatcc tggaagcgat agatgtaaac aaacggagat       120
     ataaagttca gtttgaggaa ttatagtagt taaaaagtgg atagaaggag taaacgttta       180
     ttgaaataga agaatataga caaagtttgg gatagcgata gagtggttga agcgggtcgt       240
     gagtatagta tgagtaacat cgaaggtagt gaaattaact aaaaagcatc aattgaattc       300
     gtaggttaat cgatacttcc gcactcacaa ttgagaccaa gaatgaaaat agattgagta       360
     atgaaaccat aaaatgtaag tagacatata atctagttga gtaaggataa ataataataa       420
     taaatttaca gtttcaagct gtcactacgg aaaatgctgc tgtgaaaatt gtgaacaatt       480
     tgagaaatcg ctagcccgaa ca                                                502
//
ID   BEL-933_AA-I repbase;    DNA;    INV; 2421 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-933_;
KW   BEL-933_AA-I; BEL-933_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2421
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2421
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4555-4555 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 2421 BP; 749 A; 458 C; 658 G; 556 T; 0 other;
     aacttgaaaa ttttatgatg tcgcgttcga ttcaggatcc cgaaaaaaca ggttttgact        60
     gcgcgagatg ccatcgtccg gatgatgaag aaagcgagat ggtattttgt gaccactgtc       120
     agcgatggta ccattccgga tgcgttggtg tatcggtcga tgtaagaaac gattcgtggt       180
     cctgcgagga ttgtctgcaa ctgtcggcgg acaaagagag gtcattcggc ctggaagagg       240
     aattggaaaa actcgagcag aagatggaga aagaaaggca ggacatcgaa ttacaaaagc       300
     tccttcataa gaaacaactg gagcaccaga aaaagctgtt cctgctgcgt agcaggccga       360
     aaaggaaaaa cgcgaaatgg agttgacgta cgaacaggaa cgtttggagc tgctagttgc       420
     cgatgaagaa gcacatcaga aaaaacgtgt aaaagtgttg aagcaagtgc aggaaagact       480
     ggaaaaattg aagcgtgaga tggcaaggat aaaattatta gcaaagaatg tagatgaggc       540
     agcattcgga tgcagaagta gacggaagga agaaggccga caatttaggc cggcgatgga       600
     gaaacggaat ggaaaggagc cagaaaggtg taaatcagaa cggaaaacaa ctgagtctgt       660
     gaaagcagtt cacggaagtc acggtaaagc cttacgaaat tatagtcaga agaagaggca       720
     acagttcatc tatttcgaaa ctagtgatga agatcggttc ttaacggata cttcaagtga       780
     agaacaagat gaggtttccg aagagtcgga agacggtatt ttgtcagtag atgaagatat       840
     tggaaagcgt cccaaagaca caaaatgtgg tctaacaaaa gctcaactgt ccgctcggca       900
     gtttctctca aagaagctcc cgactttcaa tggtcgactc gaagagtggc ctatgtttat       960
     tagtgccttc gagacgtcta atgcagcttg tggattttcg aatgtcgaga acctggctcg      1020
     acttcaagag tgcttgaagg ggcaagcact agaaacagtg aggagcagac tacttctacc      1080
     gagtgcagta ccccaaataa tcgaaacctt acgcatgctg tacggtaggc cggaacagct      1140
     gttgaacatg ctgttagcaa acgtgaggaa agcgccatct ccaacagcgg acaaattagc      1200
     ttcgtacatc aagtacggtg tcgttgttca agagcttacg gatcatttgg aagcgacagg      1260
     tttgaccgcg catctaatga atcctatgct aatccaggag ctgacggaga agctgcctgc      1320
     caatctgcag ctagaatggg ttcggtatcg aaggaagact caggttgtga ctctacgaac      1380
     attctccaaa tttctttcca gacttgtcag agatgctagc gagattactt cgtattgtga      1440
     gatcacccct agcgatccgg atgaagagtt tcagagagct gaaagcaaag agcacgaaga      1500
     atttcgtgag ggattcatac acacgcacaa tgccggagcg aatggaatgg gaaatcaaca      1560
     acctgataaa aagagatcag catgcaggat ctgtggctac tacgatcatc gtattcggaa      1620
     ctgtgaagcc tttaagagat taaatcttac cgaaaggtgg gaagcagtgc ggagatggag      1680
     gctttgctat ttgtgcttga acgaacacgg aagagtcccg tgcaagctga atattcgatg      1740
     taatgttgat cagtgttgtg gacgtcacaa tacgctgctg catatcgatc agactgatca      1800
     tacaaatggt aacgaaacga ttatttttcg tatgatccca gtcactttgt acagcggtga      1860
     tcgcgccgtt gatacaattg cttttctgga cgaaggatca tcacatacgt tagtggaaaa      1920
     gtcgttggca accatgttac aggccaaagg agtgacgcag caatttcgag tgacttggac      1980
     agctggtatg accaggctgg agaaagattc gagacgggtg gaaatgtgga tttcggcaag      2040
     aggatcgtca cagcgtttcc gtattggtgc cgcccaaacc gtggatagtt tgaaattgcc      2100
     tcaacaaact gttgcaatgc atgaggtcat ccgcaaatat tctcatctgc aagaactgca      2160
     aggaacggaa ttcgaacaag gaattccaca aatattaata ggattgaagg acattcacct      2220
     atgtgcgcct ctcgagtcca aaataggtac gcctaatgaa ccgatagccg tgagatcgaa      2280
     gctgggatgg tcggtttatg ggccttcgtt cgtgcgccag gtggttccga agtgaagtat      2340
     cgaagatggt ggtgcttgaa gtttaaggtt gtaactctag cgataaagag agttcttagc      2400
     tagaattacg gggagggagt a                                                2421
//
ID   BEL-933_AA-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.08, Created)
DT   12-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-933_AA-I;
KW   BEL-933_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-456
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-456
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4587-4587 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 456 BP; 164 A; 66 C; 110 G; 116 T; 0 other;
     tgttcgcacc accatacatt gaaaaaccct gcgcttatcg cacatgctga tgatggtcgt        60
     tgtgaagttg gcggtaaaag aagtaggtga attgtttggt ggttaaattg ctccaagcga       120
     gagaagtaaa caaacaatcg taaattgtga gttgaattaa atcgggaaac agaactgaaa       180
     tagaagaatt tgaagcatag aaggtttggg atagtggaag aatagtggaa acgggtcttc       240
     agtgtattag tgcggtgcag gataatcgat accgctgcgc ccactactga gacccgaaga       300
     gaaattagat aaagcgaaga aaccataaaa tgtaagtaga ggtgtaaata gttttataag       360
     aaaaatagta ataataaatt tatagtttca agctgtcgtt accaaaatcg ctgctgtgaa       420
     aattgtggtc aatttcgaaa atcactagcc cgaaca                                 456
//
ID   BEL-934B_AA-I repbase;    DNA;    INV; 2872 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 26.08, Created)
DT   15-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2872
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2872
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (15-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 2872 BP; 821 A; 818 C; 659 G; 574 T; 0 other;
     tggtccaatc gagccggata gaggagccag ttccttgaag gctgcaacag cagcagagtg        60
     tgtcgtcaat caacagattg agacaatttc atccaattgc tatcgccgat agcaatcagc       120
     tttcctacca agaggattgc tgttgttcct gcccggtagc tcgacacaag agcatagaga       180
     acacattcca ggtttccatt ggcggagagg aaacgaaagc aaagtggtag tgagtgcaag       240
     tgaaaaagtc cgaatcattt ccaccccgaa agtaagtcgc gcgcgtgtga agtggttcca       300
     aaatggccaa cgtgaaaagg cttttcgccg aacgcagcct cattgaggcc aaagtgaaca       360
     agctccagca gcagttggtg agagacagta ccgctcaacc gagtttggca cgtgtaaagc       420
     tgtatcaaag agagctgcag ttcctctaca agcaatacca acgagtgaac ggtgagatct       480
     tgtccgcagt cccagtcgac aggtactcgg atgtggacga ggattatgag cgcttcgatg       540
     acctccacga cgatgcctgc ttactggtgg aaaccttgtt gcattcattc ccgagcacca       600
     gtgacaggta tcagatgtat cattcaccat catccaatta tttcgctgca accactgcgc       660
     caccttggcg caccccactg attcaaagcc gatcaccgag tccaccgacg gaacagtccg       720
     ttccgattcc agacgtgatg gagaagccaa acacgtcgcc accgagagag atgttcccag       780
     agcagctgtt tccagcccaa gccaacgagt tgaaggtgag ccagtttgcc atcaacccaa       840
     tccattccat gcagccatca agcactgaaa cttcatccat gaagttaaat cctgtgtgtg       900
     gagcagccct ggtccgttcc gagggtgatc tcgccgaggt catcaagtgc aagtcggcac       960
     caacgccgat tgtcccgcct tctgttgctt caatagttca gaagtgccat cgagaagaag      1020
     aagcaacaca acgagataaa gcatcaaccc aacgagcagg tgtgccagtc caacaaggag      1080
     aggtgctaac ccaatgtgag ctaccaaagc taccaaccca tgaagatttc acccaccgtg      1140
     gaaaagtgcc aaggagatgt gtagaggtga caacagttgc ctaccaacac aagtccaacc      1200
     ctccaagcaa gcagagtgag catcaagcta atccagcaaa tccgacacta gcagcggatt      1260
     tcaacgtcgg caatgagaca accaagtttg tcgacagcga gcgcaacatt ccatcatgtg      1320
     aaatcaatca accatacgat gatgattcag cagcagatca tcaagcgacg aacacgtttc      1380
     caattccaat cagccaggtt ggaatccatc cgaggccgac aacattcgag agggttaccg      1440
     gatttggtgc gttgccgaag acattcctcg tgccacccgg tttccatcca acgcccaggt      1500
     tggcaccgat gccaacagaa gtacttccag tgcccaagcc actccagcat ccaacagtaa      1560
     gtacgtacca gtgtgctacc ggttctcatc cggtgctcca gcgaattcct tgtgtgactg      1620
     gattccgctc aatcaacaaa gagttcccga gagcgatcgg attgcgtctg ggcacgaagc      1680
     gattcccacg taggaccaga ttccgtccag cgtcgaagca atcatcccgt ttgaccggat      1740
     ctcgtcgaac accacagcga ttcccatgtg tggccggatc cattccggca ctgaagtttt      1800
     catccagcct gaccggatcc aattcggtag tgcaaccttt ccagcgtgtg gaaagattcc      1860
     aaccagtgtc gaagcatccc agctttgtaa ccgagttcgg tgtgaacttg gaccagcacc      1920
     tgaatgtagc aggattcatt ccggtactga agcagccatc cagtgagacc agacaccagc      1980
     tagtggtcca gcgatttcca gagaagcctc cagatttgac cagaattcct ccggtaccca      2040
     agctagctcc tgcgagtctc aagccaaatc ggatgtcagc aggcatccct cagatgatca      2100
     agccaacccc gaagaagaac gagatgcatc cagcgaagaa gtcgtgttca gaggcaaccg      2160
     gaagccatcc ggtatccaag tggtttcagc gttcaaccac aattccaccg atctcgatgt      2220
     caatcccgac gacagccgga atccgtccgg tgagggaaac aatcctgatg cccaacgaat      2280
     acagtccggt attgagagaa gctccgtacc agagatcgat cgagatgatg ccacctgtca      2340
     atccgactgg tggttccaag cagcttcata ccaactcaag gcaggagaaa tcatcagatg      2400
     aagccatcat tcaatgtcga gtcagcaaag ccatcccgga gtgcgtattc cgtacgcatc      2460
     cacccaagca acagttcatc cacagcataa caaccgagga tcgtgagcag caagtatcac      2520
     tcaacgattc gtccatcacc tcagttcaac ccacgcgtca tgagctacgt ttcatccaac      2580
     attgccgcaa accacgatca accgattgtg ggcgtgaaac caacctcacc acccacaagc      2640
     tacatcaacc tacagaaaca gtcatcaagt caagcaacac cagccatcag atgcgagtca      2700
     atcctccaag cattccgcca ccatcaagtc atcagcagaa attcatccaa gaatcagcca      2760
     gcagttcaac acttcatcat tcaatcaaca agattccatc cttcccatcg aggacaacat      2820
     caacctttcg ctgcaagaaa ttgttgatac gaggtctcaa ccggggggag aa              2872
//
ID   BEL-934B_AA-LTR repbase;    DNA;    INV; 641 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 26.08, Created)
DT   15-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-641
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-641
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4543-4543 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 641 BP; 183 A; 180 C; 121 G; 157 T; 0 other;
     tgttccgtcc cgacgtcaca aaattcagtt cgagaaacgc tggcagcagg cagcagcgga        60
     atattccatc atcaacatcc ttgcattgtg ctacccggtt tgcagcatca aaatagggag       120
     cggaaaatac cctaaaggac aatttgcgtc ccttttctgt tcattcaatt gccatccatc       180
     tagccagcta tgtatagcgt gaacgcatca accaaacaga ttgcaccacc accagcacaa       240
     ccatcatcat catcatcgaa cccactacag catcttccag gcagtggaaa tttccatcat       300
     tccccacacc gctgcgcatg caagacttcg tttacctgta gcctatataa gcagcttgca       360
     tgcgcaagaa catcatcagt ttccaaatca gttcaatcat tgtagcgtta tcaagtagag       420
     agaatataca gtagttcagt agtcaaatga agcaaatcat cttttccttc tccatcagtg       480
     gaagccaaac cagccttccg tgaaggcttg agtcgtttgt tatccatttc cagttgagct       540
     atcggtcctg tgccctgttg caccaagcaa caggttagcg gacgatcaac agatcgttcc       600
     gttcaagctc aacagagcaa accccgttgc acgccgcaac a                           641
//
ID   BEL-934C_AA-I repbase;    DNA;    INV; 3073 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934C_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3073
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3073
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3073 BP; 850 A; 872 C; 714 G; 637 T; 0 other;
     tatggtccaa tcgagccgga tagaggagcc agttccttga aggctgcaac agcagcagag        60
     tcagtcgtca atcaatagat tgagacaatt ccattccaat tgctatcgcc gatagcaatc       120
     agctttccta ccaagaggat tgctgttgtt cctgcccggt agctcgacac aagagaacat       180
     attcctggtt tccattggag gagaggaaac gaaaattccg caagcaaagt ggtagtgagt       240
     gccagtgaaa aagtccaaat caagacaaga cgtgcgcgtg tgaagtgttg cgaaatggcc       300
     aacgtgaaaa ggctgttcgc cgagcgtagc ctcgtcgaag ccaaagtgaa gaagctgcag       360
     cagcagttag tgaaagacag tacggctcaa ccgagtttgg cgcgtgtgaa gatgtatcaa       420
     agagagctcc agttcctcta caaggaatac caacgagtga acggtgagat cttgtccgca       480
     gtcccagtcg acaggtactc ggatgtggac aaggattatg agcgcttcga tgacctccac       540
     gacgatgcct gcttactggt ggaaaccttg ttgctttcct tcccgagcac cagtgacagg       600
     tatcagatgt ataattcacc atcatccaac tatttcgctg cgaccactgc accacgttgg       660
     cgcaccccac tgattcgaag ccgatcatcg agtccaccga cggaacagcc cgtttcgatt       720
     ccagacgtga tggagaagcc aaacacgtcg cctccgagag agttgtcccc agagcagctg       780
     ttcccagccc aagccaacga gttgaaggtg agccagtttt ccatcaaccc aatccattcc       840
     ttgcagccac caagcgctga aacttctgcc atgaagtatc ctgtgcgtgg agcagccctg       900
     gtccgttccg agggtgatct cgccgaggtc atcaagagca agtcggcacc aacgccgatt       960
     gttccgcctt ctgttactcc aatagttcag aagtgccacc gagaagaaga agcaacccca      1020
     cgagaaagag tgccaatcca acaaggagag gtgctaaccc aatgtgagct accaaagcta      1080
     ccaacccatg aagattccac ccaccgtgga aaagtgccaa cgaaacatga agaggtaaca      1140
     acagttgcct accaccaaga gtccaaccct ccgtgcaagc agagtgagta tcatgctaat      1200
     ccagcaaatc cgacactagc agcggatttc aacgtcggca atgagccaac caagtttgtc      1260
     gacattgaga gcaacatccc atcatgtgaa agcaaccaac catacgatga tgatcctgca      1320
     gtagttcatc aagcgacgaa cacgtttcca atcccaatca accaggttgg aatccatccg      1380
     aggccgacgc cattcgagag agttaccgga tttggtgcgt tgccgaagac attcctcgtg      1440
     ccacccggtt tccatccaac gcccaggttg gcaccaatgc caacagaagt acttccagtg      1500
     cccaagccac tccagcatcc aacagtaact atgttccagt gggctaccgg ttcccgtccg      1560
     gtgctccagc ggattccttg tgagactgga ttccgctcaa tcaacaaaga gttcccgagt      1620
     gcgatcggat tgtgtctggt cgcgaagcga ttcccatgta agaccagatt ccgtccagcg      1680
     tcgaagcaat catcccgttt gaccggatct cgtcgaacac cgcagcgatt cccatgtgtg      1740
     gccggatcca ttccggcact gaagttttcc tccagcctga ccggatccaa ttcggtagtg      1800
     caacttttcc agcgtgtgga aagattccaa ccagtttcga agcatcccag ctttgtgacc      1860
     gaattcggtg tgaacttgga tcagtacctc gatgtagccc tattacttcc agtactgata      1920
     cagccatcca gtgtgaccag ataccagccg atgtctcagc gatttccagc tgcaagcgag      1980
     ttccatctgg tgcccaagca gttcttgtgt gtgtccagaa tcaatccgat ccataagcag      2040
     ccagcttgtg cgaccggacc tcaaccggtt ctgaagcagg tcccgagtat tgtcggaacc      2100
     catcccattc cagagaagcc tccagatttg accggaatcc ctcctccggt ttccaagccg      2160
     tttcggtcgc caaccgaaaa ccatccagtg ctcaagacga tcctgttgct gaccggtatt      2220
     cctccggtac ccacgcaagc gagtcccaag ccgaatcgga tgccagcagg catccctccg      2280
     atgatcaagc caatcccgaa gaagaacgag atgtatccag cgaagcagtc atgtccagag      2340
     gcaaccggaa gccatccggt atccaagtgg ttccagcgtt caacaacgat tctaccaatt      2400
     tcgatgtcaa tcccgacgac aaccggaatc cgtccggtga gagagataat cctgttgtcc      2460
     acagaattac gtccggtgtt gggagaagcg acgtaccaga gatcgatcga gatgatgccg      2520
     ccggtcaaac cgactagtgg ttccaagcag cttcatacca actcaaggca ggagaaatca      2580
     ccagatgaat ccaccattca atgtcaagtc agcgaagcca tcccggagtg cgtattccgt      2640
     acgcatccac ccaagcaaga gatcatcctg agcatgccaa ctgaggatcg caagtaccac      2700
     tcaacgagta cggtcctaca aagtcatcaa gcaacaggag ccatcagatg cgagtcattc      2760
     cagctcatcc atcacttcag atcaattcaa cgcatcgtta gctacgtatc cgtttcatca      2820
     aacattgccg caaaccacga tcaaccgatt gtgggcaagg aaacaatctc accgcccaca      2880
     agctaagcca atctacagag acagccatca agtcatcagc agaaattcat ccaagagagt      2940
     caggtcagca atgtttatgc caacagttca acacttcatc cagcaatcaa caaggttcca      3000
     tcttttccat caaaagcaac atcaaccttt cggtgcaaga aattgttgat acgaggtctc      3060
     aaccggggga gaa                                                         3073
//
ID   BEL-934C_AA-LTR repbase;    DNA;    INV; 625 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934C_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-625
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-625
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4544-4544 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 625 BP; 179 A; 182 C; 119 G; 145 T; 0 other;
     tgttccgtcc cgacgtcaca aaattcagtt tgagaaacgc tgacagcagg cagcagcgga        60
     atactccacc atcaacatcc ttgcatttag ctacccggtt tgcagcatca aaatagggag       120
     cgaaaaatac cccaaaggac aatttgcgtc ccttttttgt ccattcgttc catcatccat       180
     ctagccagcc atgtatagag tgatcgcaca accaaacaga ttgcaccacc accagcacaa       240
     ccatcatcat catcatcatc atcgaaccca ctgcagcatc gtccaggcag tggaagtttc       300
     catcattccc acaccgttgc gtatgcaaga cttcgtttac ctgcagccta taaaagcagc       360
     ttgcatgcgc gaaaacatca tcagtttcgt tttaaccttt gtaatatcaa gtcgagaata       420
     cagtagattt caagtgaatc aaatcgcctt ttcctcctct accagtggaa gccaaacagc       480
     cgtcgtgaag gcttgagtca gcagaagtcc acttccagtt gagctatcgg tcctgtgccc       540
     tgttgcacca agcaacaggt tagcggacga tcaacagatc gtccgttcaa gctcaacaga       600
     gcaaaccccg ttgcacgccg caaca                                             625
//
ID   BEL-934_AA-I repbase;    DNA;    INV; 2907 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 26.08, Created)
DT   15-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934_;
KW   BEL-934_AA-I; BEL-934_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2907
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2907
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4590-4590 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..2904
FT                 /product="BEL-934_AA-I_1p"
FT                 /translation="MANVKRLFAERSLVEAKVKKIQQQLVRDSXXQPSLAH
FT                 VKMYQRELQFLYKQYQRVNGEILSAVPVDRYSDVDKDYERFDDLHDDACLL
FT                 VETLLHSFPSTSDRYQMYHSPSSNYFAATTAPRWRTPLIRSRSPSPPPEQS
FT                 VPIPDVMEKPNTSPPRELSPEQLFPDQANELKVSHFAINPIHSVQPPSAET
FT                 SAMKLNPVCGAALVHSEGDLAEVIKSKSAPTPXVPPSVAPIVQKCHREEEA
FT                 TQREKVSTQRAGVPIQQGEVLTQCELPKLPTHEDSTHRGKVPRRCVEVTTV
FT                 AYQHKSNPPSKQSEHQANPANPTLAADFNVGNETTKFVDSERNIPSCESNQ
FT                 PYDDDPAAVHQATNTFPIPINQVGIHPRPTXFERATGFGALPKTFXVPPGF
FT                 HPTPRLAPMPTEVLPVPKPXQYPAVSSFHCATGSRPVLQRIPCVTGFRSIN
FT                 KEFPSAIGLCLVAKRFPCRTRFRPASKQSSRLTGSRRTPQRFPCVAGSIPA
FT                 LKFSSSLTESNSVVQPFQRVARFQPVSKHPSFVTELRPVLKQPSSXTRHQP
FT                 VXQRFPAASEFHLVPKQFLCASRNHPIHPCIVGTHPIPEKPPDSTGIPLPV
FT                 SKLFRSPTEIFPVLKTFLLLTGIPPVPKQTPASLKPNRMSAGIPPMIKPIP
FT                 KMNEMCPAKKSXPEPTGSHPVSKWFQHSTTIPPISMSIPTTAGIRPVRETI
FT                 LMPTRLRPVLREAPYQRSIEMMPPVKPTSGSSTPISTQGRRNHQMNPPCNV
FT                 ESAKPSRSAYSVCIHPSNREIIQSIVTEDREQEVPLNEYVSNKVFKQHQPS
FT                 DASQSSKHSATIKSSAEIHPRINQRCLCQQFNTSSFNQQDSILPIEDNINL
FT                 SLQEIVDTRSQPGG"
XX
SQ   Sequence 2907 BP; 802 A; 832 C; 683 G; 579 T; 11 other;
     tatggtccaa tcgagccgga tcgaggagcc agttccttga aggctgcaac agcagcagag        60
     tgtgtcgtca atcaacagat tgagacaatt ccattccaat tgctatcgcc gatagcaatc       120
     agctttccta ccaagaggat tgctgttgtt cctgcccggt agctcgacac aagagcgtag       180
     agaacatatt ccaggtttcc attggcggag aggaaacgaa attcccaagc aagcaaagtg       240
     atagtgaagt agtgaaagag tccaaatcaa gacaagaagc gtgcgtgtga agtgtgtccc       300
     gaaatggcca acgtgaaaag gctgttcgcc gaacgtagcc tcgtcgaggc caaagtgaag       360
     aagattcagc agcagttagt gagagacagt amcgmtcaac cgagtttggc acatgtgaag       420
     atgtatcaaa gagagctcca gttcctctac aagcaatacc aacgagtgaa cggtgagatc       480
     ttgtccgcag tcccagtcga caggtactcg gatgtggaca aggattatga gcgcttcgat       540
     gacctccacg atgatgcctg cttactggtg gaaaccttgt tgcattcatt cccgagcacc       600
     agtgacaggt atcagatgta tcattcacca tcatccaact acttcgctgc gaccactgcg       660
     ccacgttggc gcaccccact gattcgaagc cgatcaccga gtccaccgcc ggaacagtcc       720
     gttccgattc cagacgtgat ggagaagcca aacacgtcgc caccgagaga actgtcccca       780
     gagcagctgt ttccagatca agccaacgag ttgaaggtga gccattttgc catcaaccca       840
     atccattccg tgcagccacc aagcgctgaa acttcagcca tgaagttgaa tcctgtgtgt       900
     ggagcagccc tggtccattc cgagggtgat ctcgccgagg tcatcaagag caagtcggca       960
     ccaacgccga ktgtcccgcc ttctgttgct ccaatagttc agaagtgcca ccgagaagaa      1020
     gaagcaacac aacgagagaa agtatcaacc caacgagcag gtgtgccaat ccaacaagga      1080
     gaggtgctaa cccaatgtga gctaccaaag ctaccaaccc atgaagattc cacccaccgt      1140
     ggaaaagtgc caaggagatg tgtagaggtg acaacagttg cctaccaaca caagtccaac      1200
     cctccaagca agcagagtga gcatcaagct aatccagcaa atccgacact agcagcggat      1260
     ttcaacgtcg gcaatgagac aaccaagttt gtcgacagcg agcgcaacat cccatcatgt      1320
     gaaagcaacc aaccatacga tgatgatcct gcagcagttc atcaagcgac gaacacgttt      1380
     ccaattccaa tcaaccaggt tggaatccat ccgaggccga camcattcga gagagctacc      1440
     ggatttggtg cgttgccgaa gacattcmkc gtgccacccg gtttccatcc aacgcccagg      1500
     ttggcaccga tgccaacaga agtacttcca gtgcccaagc camtccagta tccagcagta      1560
     agttcgttcc attgcgcaac cggttcccgt ccggtgctcc agcggatccc ttgtgtgact      1620
     ggattccgct caatcaacaa agagttccca agtgcgatcg gattgtgtct ggtcgcgaag      1680
     cgattcccat gcaggaccag attccgtcca gcgtcgaagc aatcatcccg tttgaccgga      1740
     tctcgtcgaa cgccgcagcg attcccatgt gtggccggat ccattccggc actgaagttt      1800
     tcatccagcc tgaccgaatc caattcggta gtgcagcctt tccagcgtgt agcaagattc      1860
     caaccagtgt cgaagcatcc cagctttgtg accgagttac gtccggtact gaagcaaccg      1920
     tccagtgwga ccagacacca gccggtgwtc cagcgatttc cagcagcaag cgagttccat      1980
     ctggtgccca agcagttcct gtgtgcgtcc agaaaccatc cgatccatcc gtgtattgtc      2040
     ggaacccatc csattccaga gaagcctcca gattcgaccg gtatccctct tccggtttcc      2100
     aagctgtttc ggtcgccaac cgaaatattt ccagtgctca agacgttcct gttgctgacc      2160
     ggtattcctc cggtacccaa gcaaactcct gcgagtctca agccgaatcg gatgtcagca      2220
     ggcatccctc cgatgatcaa gccaatcccg aagatgaacg agatgtgtcc agcgaagaag      2280
     tcgtkcccag agccaaccgg aagccatccg gtatccaagt ggttccagca ttcaaccaca      2340
     attccaccga tctcgatgtc aatcccgacg acagccggaa tccgtccggt gagggagaca      2400
     atcctgatgc ccaccagatt acgtccggta ttgagagaag ctccgtacca gagatcgatc      2460
     gagatgatgc caccggtcaa accgactagt ggttcaagca cccccatatc aactcaaggc      2520
     aggagaaacc accagatgaa tccaccatgc aatgtcgagt cagcgaagcc atcccggagt      2580
     gcgtattccg tatgcatcca cccaagcaac cgagagatca tccagagcat agtaaccgag      2640
     gatcgtgagc aggaagtacc actcaacgag tacgtcagta acaaagtctt caagcaacac      2700
     cagccatcag atgcgagtca atcctccaag cattccgcca ccatcaagtc atcagcagaa      2760
     attcatccaa gaatcaacca gcgatgttta tgccagcagt tcaacacttc atcattcaat      2820
     caacaagatt ccatccttcc catcgaggac aacatcaacc tttcgctgca agaaattgtt      2880
     gatacgaggt ctcaaccggg gggagaa                                          2907
//
ID   BEL-934_AA-LTR repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 26.08, Created)
DT   15-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-934_AA-I;
KW   BEL-934_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-656
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-656
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4518-4518 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 656 BP; 175 A; 191 C; 131 G; 158 T; 1 other;
     tgttccgtcc cgacgtcaca agaagcaatt cgagaagcgc tggcagcagg cagcagcgga        60
     atattccatc atcaacatcc ttgcatttcg ctacccggtt tgcagcatca aaacagggag       120
     cggaaaatac cccattggtg ccaagttgtc gcgcaaagta caatttgcat ctcttttctg       180
     ctcattcgtt ttaccagcca accagacaga ttgcaccacc accagcacaa ccatcatcat       240
     catcatcgaa cccactgcag catcgtccag gcagtggaag tttccatcat tccccacacg       300
     gctgcgcatg caacgttcct gtttacctgc agcctatata agcagcttgc atgcgcaaga       360
     acatcatcag tttcgattca gtttcgattc agtttcgttt gagttaacat cagtttcctt       420
     tcaasctgtg taacatagca agtcaagaat acagtagttc aagtgaagca aatcatcttt       480
     tcctcctcca ccagtggaag ccaacgagcc ttccgtgaag gcttgagtca tcagtagtcc       540
     attccagtcg agctatcggt cctgtgccct gttgcaccaa gcaacaggtt agcggacgat       600
     caacagatcg ttccgttcaa gctcaacaga gcaaaccccc gttgcacgcc gcaaca           656
//
ID   BEL-935_AA-I repbase;    DNA;    INV; 2469 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.08, Created)
DT   17-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-935_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2469
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2469
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 2469 BP; 823 A; 452 C; 598 G; 596 T; 0 other;
     tcaaaaagat ttatgaagat ctagcgacat gatgccacat actccaaaca acgctaacag        60
     tgtttgtgga gcctgcggat tggaattaga aacgcaagaa ggcaaagtgc attgtaaata       120
     ctgtcgaatt tggtatcact atcagtgcgt tgacgttacg ggaaccgtgc caattgaacc       180
     ggaatggtat tgtccggaag aagattgtca aaatcagaag aaacgagacg atcaagcctt       240
     gaggaccgga acgatcaaaa ggaaaaagaa gaaatcagga gatgatcact tagatacatt       300
     tagtgcgaaa tccgacagtg acctctgtcc accattggat cgtcaactta gatcgttgac       360
     gcgagaaaaa caggacaagt tagaggaaat acagcaagaa cgtattttga gggagaagcg       420
     attggagatg aagcaaattc tccaaaggca gaggatagag ttggagaacg atttgcaaga       480
     aagagaatta cagcaggaaa aacagctact ggaggagatt ttaaagaaaa agcagaatca       540
     tttagagcgt atgaaggatt tgcgtaagtc gtatcaagta cgttttgatg caatccagca       600
     ggaattggat agtatgaagc accataggcc gaagcggtca gaaagatggg taacggacga       660
     cgtagctaac caacgaatcc acggtgtaaa atttggcgga aaaaatgaaa cagagaaatg       720
     cgaagatgaa agcacggagg aaatagacag tgaaatatcc attagtctta gtgagggaac       780
     tgaggaagaa tcgggaaatg aatatagcaa gaagttttcc aagagaacgg cgtcatacaa       840
     acaagagcgg agatcgaata ctccaacgaa ggcccaactt gctgcacgaa acggcatttc       900
     tcagaaatta cctacatttt ctggtaaatt agaagattgg ccactcttca ttggcagtta       960
     tcgagcctct aatgatgcct gtgggttttc taacgtcgaa aatttgattc gtctgcaaga      1020
     gagcttgaga ggtccggcac tagaaagtgt tcgagggcag ctgctgtttc caaaaacagt      1080
     tccaaatgtg atcaaaaagc tacagcagat gtatgggcga ccagaattac ttctccaatg      1140
     gcacctggac aagttacaaa atttgaaatc tccaaaatcg gatcaactag ccacctatat      1200
     tccatttggt aatgctgtag atcagctatg ccaacaccta gaggcggcgg atttaaaaca      1260
     gcattcaatg aatcctctcc tcgttcaaca gttggtcgat aagcttccta ctaatgataa      1320
     gcgagaatgg attcgtttta agaaacagaa gaagaaggta accctccaaa cgttcaatga      1380
     gttcgtatca gggattgttt atgaagcgtg tgaagcgaac gtttgcttag aatatggaat      1440
     gcaacacttg gagtacgaga ttggcagcag tgagagggac gaaaaattcc gcatgaacca      1500
     tgctacgaag ggggcggttt atatgcattc aacgcggccg gtggattgca agttcaagga      1560
     caagcgttac cagaattcct gtaaactgtg ctgccgaaac tatcatcatc ttcgtttttg      1620
     tcaggacttt aggtcaatgc agctggaaga ccgaatgaaa gtagttgatg cgtgggggct      1680
     ttgcgtttta tgcttgaata atcacggaca ggcaaaatgt cggtccaaat tgcgttgtag      1740
     ctttagaaat tgtcatgaga gacacaatgc tttactacat tcagtagaca gtaatgtaaa      1800
     agtagaagcc gatattgaaa caaacggtac tacgttgttt cgcatgctac cagtaacatt      1860
     gcactacggg ggaacttccg tagataccct ggcatttcta gatgaaggcg catctacaac      1920
     tttgatagat aaagatcttg ccgatcagtt aggtgtcatt ggcaccaaga acgaatttac      1980
     acttgactgg acagcgggaa tcacacgagt tgaacaggaa tccagacaag taaatttgtc      2040
     tatatctgca aagggtgaac atcaaaagtt ctcgctcaac accgtccaga cagttggaga      2100
     cttatcatta cctttacaat ccctggattc aagagaagct aagcaactaa ttcctatctt      2160
     acggggtcta ccgatcgctt cttatgaaaa acaacgtcca ggattgttga ttggtttgaa      2220
     caatatacac ttaattgctc ctgttcaatc gaggatagat gagtctggcg aattgattgc      2280
     agttcgatca aaattgggtt gggcgatcta cgggcagaca tcttaaattg ttagagctaa      2340
     aatacaaacg aatgcaatcg taagtgaaat aactgatgca gaacacgtag atcataaatt      2400
     agtgatgtat aaggttgaaa gtaaaatcgg gccccttgca agaaggtacc gatgttacgg      2460
     ggtggagtc                                                              2469
//
ID   BEL-935_AA-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.08, Created)
DT   17-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-935_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-441
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-441
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4526-4526 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 441 BP; 174 A; 66 C; 83 G; 118 T; 0 other;
     tgttaaatca cttggatgct acagtatctg caccagtcta tagcgaagga gaaatgaaca        60
     acaggtagtg aaatttgcat aattctctgt caaataggtg atcgaagtag ggacagtact       120
     aaacaaagcc aatcgtactg aggaaaatct agaaactgaa tacaaaatag tcacaaatag       180
     tgagcctaat tataagtttt attagcagtg atttgatact cacatacata ctgaaaatta       240
     tgagctaaag tttcaccatt gtaataggta aaggaatgcg agagccagag tgaaattggg       300
     atcgaaaagt cgcaggaagc aaactaaatc ttgtaagtta agagatgcat ttataatgaa       360
     ttataatcaa ataaaaatat ttacagtttg agccgatcta caaaggctgc tccaaaaact       420
     tagtttatct tcataacaaa c                                                 441
//
ID   BEL-936_AA-I repbase;    DNA;    INV; 6269 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.08, Created)
DT   17-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-936_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6269
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6269
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6269 BP; 1749 A; 1466 C; 1644 G; 1410 T; 0 other;
     aattaaattt ttccgttatt tttcggaatg tcaagcggaa gcgtagcggg tgccggggaa        60
     tcttctcgta agaaacgaga attctcccgg aggtgagggg gcgagttgca attcgtgtcg       120
     tcgtgtcgat aatagtcgta tggtgcaatg tgacgagcgt gacttgtggt accattacga       180
     ctgtgtgaat gtggacgata gtatccgaaa tcatgattgg agctgtaatg gatgtatgag       240
     gacagcactg gagaagcaaa gtgtgttttg agcgagcaga tgaagcgtct tgaacagcag       300
     cagaggcagt ggcaacaaga gcaacaaagg cgtctagagc agatggagga acagaagaag       360
     cttgaacagc tgcggaaaca actagagttg cagcagcaaa agcaggagca gttcgaccag       420
     atgcggatag ggcagttaca gttgcagccc gccgagtttg cgatttggag agccttcaaa       480
     agcgttcagt gtgattccaa agcagcagca gcacatcaag atttctgaga aagtccgttc       540
     agcaagagtc gaaacgaatg atcaaagcaa cctgcaaccg ttggcgagct cgatcgctaa       600
     gaatgcaaag ccgcctagca gatccgacgg tgcatcatcg aagtcatcga agcggtcggc       660
     aaaatttcga ctgttgcaag ctagagccct ggaagctaga caggctttgg agaagaagca       720
     gttagaagag cggttagcgt tggagtgtga aatgttggag accagcgatt ctgaggtgga       780
     atcgactacc agtgtcgaga agatcaatga atggctggag aaaacagaga acgtggggca       840
     agaagcaggg aattcgatgg acgaaaacac cgttgcccat atatgacgaa ctattgcgga       900
     aagcaaccgt gtcctcgact gaacagcgga tgacatgtag cggcggtgca gctgggccat       960
     ctgttcagca acagctcatc gtacagactg attcgcttca gccacgcatc gttccacagc      1020
     aatgtagtga tggttacgct tacgttaatc aaccaacatc tgtcgggaac attctgagat      1080
     ctggagttag ttaccagcca gcatttggtg aatatccacc ggcagtatcg ggttttacat      1140
     cgcaacctgt gtgcagtgta gcatcacaac gacagccgtc aacagcttgt ccggcggcga      1200
     gccatccaca ccgcgtcgtt cagagcatgg cgtctgctgg tcaaagtatc ggacaacacc      1260
     ccctgacgac atcgactccg cgacaaaatg tgggtctttc tcagcaacag ttcccgctgc      1320
     agatgagtag taatcctcta ccgctgaaca gtggtcatct agcggcgagg cagacagtga      1380
     aggatctacc taagttcggt ggtgatccag aagattggcc gcgattcatt cgctgcgtac      1440
     gagcgcactt cgagcatgtg tgcctttcgg aacgacgagc tgctcgatcg tttagaacga      1500
     agtctacacg acaaagcgct taacgcggtt aagagtctcc tgctgcatcc agataacgtt      1560
     ccggtgattg ttaatcgatt aaaaacactt ttcggcaatc cagagtccat catagagacg      1620
     atggttcgta gaatccgcat gatgccacca ccgaaagcgg agaagatgga atcgattgtc      1680
     gacttcggtg ttgctgttca gaatctttgt gcgactatac gagtgtgcca gatggacgag      1740
     cggctgtaca acgtcgcctt acttcaggag cttgtcgata gcctgccgcc ggcattgaaa      1800
     atgaaatggg cattccatcg gaaggagaaa ggagttgtaa cgctactgga cttcaacgat      1860
     tggctcaatg aaatgggttg aagccttatg tcaagtgatt tcgtccagca gtgtgggcga      1920
     aatcgcaacg gtttgagaac aagcccgaga agaagtcgag aaaagatgaa gcctttgttc      1980
     acgcacattc cacacaccta ccggagcaga cggatcaaag acaatgtcta gcgtgcggaa      2040
     acgagtgtag ttccttagag aaatgcaaca gttttctaaa aatgacaccg aacgcgcgat      2100
     ggtcactggt gaatgagaaa aagatctgcc gaaagtgcct tacaagcact ttaagcctgt      2160
     gagaggaaag ttccctgtaa ccagaatggg tgcagcttcc tacatcaccg gctgttacat      2220
     gacgacagta gacacaaaaa gccgtcgcca agcattccgg cacagtcgcc tcagttaacg      2280
     cccatcacag cttgctaggg aaagtacttt taaagtacgt tcgtgtcacg gtatacggca      2340
     gaggtaaacc aatcaccacg tatgcatttc tcgatgccgg atcaacttca acactgatgg      2400
     agcacaagcc tatgggaaga attaaacctc ggtggagaga agtctccact atgcatatca      2460
     tggactggcg gacaaggacg atacgagaag gactcggttg tattctcagc tgagattgcc      2520
     ggtgctcaga cgccaacgca aagcttccgg ctcccggagg ttcacacagt ccgaagtcta      2580
     gaccttcctg cacaaacact gtccgtagaa aatctggcga agcagttcca tcatttgtcg      2640
     ggtttgccga tcgagtcgta tgttgctgtt aaaccaagaa ttctgctcgg tgtcgacagc      2700
     tccagactag aatacccgct cgattccaag gagggcgatg aaaatcaacc gacagtagta      2760
     ctgacgcgac ttggttgggt agtttatggt ccgtgctcag ttttcaggaa caactactat      2820
     cggagaagga agtttcgtat ggctaccaca tatgccaatg tggagggact acatatcgac      2880
     cgttaaaatt agcttttcca tgggatagtc ctcggaactt caaacatgtc agtaagccac      2940
     tttgatgtcg aaggattgac cggaacgaag cgatgagctt ctgctgacga atacgattcg      3000
     ccaggacaaa aggtatgaaa catggtcctc cttggcgaat acgatgatct tcggatgccg      3060
     gagagtaaag ccatggccat gaagcgacat gactgcttga acaagcgcat gactcgtgaa      3120
     ccaaagctag ccaaggaact gcaggagaaa atcttggact atcagacgaa agggtacatt      3180
     cggaaactgt ctgtacagga ggaagcaacg cacactgggc gctcatggta tctaccaatt      3240
     tttccggtcg tgaatcccaa caaacccggg aagctccgta tcgtttggga tgctgccgcc      3300
     aaagtgggaa atctttctct caattcgttt ctgttgaaag gccccgatct agttacgccg      3360
     ctacaacatg tcctccaacg tttccgagag ttccgtacgg cagtgacagg agatatccgt      3420
     gaaatgtttc accaagtgcg gatcaatccc gaggaccaac attgccagcg attcctgtgg      3480
     aatgatggca ttccaggaaa aggtccatcc acatacgcga tgaaggtgat gacgttcggt      3540
     gcgagctgct ccccaagtag tgcacaatac gtgaagaacc tgaatgcgga acggttcaga      3600
     agccagttcc cggatgcagt ggaggccata tgccatggga cgtacgtgga cgatatgctc      3660
     tgcagcgtgg agtctgaagc ggaagccgta aagcttgcgc aggatgtaca ttgtatacac      3720
     gctgaaggtg gatttgagat tcgaggttgg ctgtcaaact ctgagagagt agtggaagcc      3780
     atgggtgaac aggtttcgac ccaaaaggac ctaaacaagg atgaagagat ggcgaccgaa      3840
     aaggtgttag gcatgtggtg gcatacagtc gacgacgtgt ttacgtttaa aatcccgaaa      3900
     cgatgccggc tggaactgtt atctggcgcg caagtgccca cgaaacgtga agtgctgcgt      3960
     attcttatgt ccgttttcga cccgctaggg ttcctcgcga acgtattaat gttcttaaaa      4020
     gttctgctcc aagagatttg gcgctcgaaa ataggctggg acgagccgat aaccgatttc      4080
     caatttgaaa agtggagaac ctggctcagc gtgctgcaca aggtggagag tgtttccatt      4140
     cctcggtgct atcgaacgat aacgacgtcg tcagccgaag tccaactgca tgccttcgtc      4200
     gacgccagcg agaacggcta cgcagcggtt gcctatttcc ggttcaaaga acatgattca      4260
     gtggagtgtg gctttgtcac cgcaaaaacc cgcgttgcac cactgaagta tgtctcgatt      4320
     ccgcggctgg agcttcaagc ggcggtgatt ggcacacgtt tggcgaagga tattacagaa      4380
     attcatcgaa ttccgatcag aaaacgtttc ttctggaccg attctaggga tgtactgtgc      4440
     tggttgcgtt cggaccaccg gagatatagc aagttcgttg gtgccagagt cggtgaaatc      4500
     ctggaaaata ctgaacaggc agagtggttt tggatcccaa caaagcagaa cgtggctgat      4560
     gaaggcacga aatggcagaa gactccagat atttctcctt caagtcggtg gtttaaaggg      4620
     ccggattttt tgtggcagaa ccctagtgca tggcccatcc aaccaacaac ccacggcaca      4680
     acaacgaccg aaatgaatgc ttcgatcaat gttcacgtgg tacatgaacc catattaaat      4740
     ttcgtaaagt attccaactg gcacaagctt ttgagggtaa cagcaaacgt cctccgattc      4800
     attaacaaca tccgagccag tttacaaaat cgtatgcgat gtataggcat tctcaatcaa      4860
     ccagagttgt ttgaagcgga acgaagtata tatcggcagg ttcagcatga aaattttagc      4920
     aaggagattc agttactaaa gcgctccagt gttcaagaca cgaagttcgt aaacccgatc      4980
     ccaaaaagta gctcgctcta cagattctct ccttttctgg atgataacgg agtgttgcgt      5040
     acgagcggaa ggaccgctgg atgccaattt atcaaccgtg acgctgtcca tcccattttg      5100
     ttgccgaaga agcatccagt tacgaagctt ataatacaat ccacccacga gcgttatcat      5160
     catctcaacc atgaaacagt tgtcaatgag ttgcgacaaa aatactggat cccacaactt      5220
     cgaagagttt gtcacaaaat tcgccgagag tgccagtatt gtaaaatgcc agagctcaac      5280
     cacaaccccc tatcatggcc gaccttccgc ctgcccgtct agcagcatac tcaagacctt      5340
     tctcatatgc cgggatcgac ttcttcgggc caatgctagt agttgtagga agacggaccg      5400
     agaaaagatg gggtgtgctg atcacatgcc tggtggtacg cgccatacac attgaaatcg      5460
     cacactcact caacaccagc tcctgtatca tggctctgcg caacttcatg gccagacgcg      5520
     gaacaccagt ggagctgttc agtgacaggg ggactaattt cgtcggtgct aaccgtgaat      5580
     tgagagaagc gctccaatcc ctcgacagaa atagtatcat gcaagaattt ttatcttcgg      5640
     acaccaagtg gaccttcttg cctccaagca gccctcatat gggagggagc tgggagcgat      5700
     tagtgcaatc agtgaagaag gtcctacata acacgcaatt gccaaggata ccaactgatg      5760
     aagttctccg gaacggtcta acggaagcgg aaaacgtaat aaattcccgc cctctcacct      5820
     atgttcctat agaaaacgcc gaatgtgaag cactaacgcc gaatcatttt cttttgggta      5880
     cttccggtgg tacgaagcca ttagtactct acgacgacaa acccgctacg ctagtaaaca      5940
     attggaaaac ctcgcaaatt ttcgccaata tgttctgaaa acgttggcta cgagaatatc      6000
     tgccgacaat cacccgtcgg actaaatggc attatccagt gaagccgatg cagattggtg      6060
     acgtagtcat aatcgtcgat ccggacctac cgaggaatac gtggccgaaa ggccgtgttg      6120
     tggacgtcaa cctaagacat ggacaggtgc gtagtgcaac agtacgaacg atgtcgaaca      6180
     tctacgaacg tccagcggtg aggctcgcgg ttctggacgt ccgcgcaatc ggaagtacac      6240
     aagagccaga gccctgtgta ctgggggac                                        6269
//
ID   BEL-936_AA-LTR repbase;    DNA;    INV; 770 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.08, Created)
DT   17-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-936_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-770
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-770
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4527-4527 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 770 BP; 293 A; 130 C; 148 G; 199 T; 0 other;
     tgttccgcaa tctacggacg cgcctccgtt accaacgaac ccccgtgaga actaggcgct        60
     actggcacag attgatgaga tcgagagaaa tgtcaaaggt atggtaggta gatcaatggt       120
     agcatgcaaa aagagtgaag aaaagacgta aacagatcag cagagttgga tagtcttttc       180
     tgaagaatca ttttggtatc tacttgcaaa tttatgaatt cgaacattaa aaagtgaatt       240
     agttttgtgt atactataaa gtaacacata tagaagtaca gagcactgga gataaaacga       300
     tataagaggt aaaaggaact taaaaagata aatattatta ctatattcta acctaaacta       360
     ttatcacaga attgtatcac tgaattgaat tgcacaaccg tcgatcttcc aagcaattag       420
     aaactccaaa ttttgtaagc tttactcaac actaaggtaa gacagcataa atttgatttg       480
     tgaagactga agaatactca aatgtgtctc aactaatgac ataggcaggc aggacccaaa       540
     agtgtaccgt acgcaaccac attccagacg taacggaaat ttagcaaggc actaacgtga       600
     gtactaagat gaaaatgtta ttgtaaaaat tacaaataag tgaccaaaca atcaattaca       660
     atgtatgcat tcttcaggga aaaatttaac aatacaaacc gtaaatacac ttggtgagtt       720
     tgttcaagtt accggaagta aaccgagtat tgttgccgat ttcgggaaca                  770
//
ID   BEL-937B_AA-LTR repbase;    DNA;    INV; 719 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.08, Created)
DT   01-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-937B_AA-I;
KW   BEL-937B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-719
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-719
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4545-4545 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 719 BP; 182 A; 162 C; 178 G; 197 T; 0 other;
     tgttcgcgaa agcgaagaca ttttggcaac acttgcaaca ctgacagtac ttctgagcac        60
     ggccatgtga gcgtcacaac caccgcatca agtgccagca gttggctgag catcacaagt       120
     gggactcttc cagttccact tccagtgaac tatgtgtcaa tgtatatgtg tttttcccta       180
     cctaactgcg caaaagcgat cgaccaatgg gaaaaaggat gatgcaatcg catcggggtg       240
     aagggtatat aaacgagagc aaaattgtaa tctgggatca gtttgaaacg tacgattata       300
     ctgtacacta ataaaacgga aaaaagtaaa aagtgatagt actaccgcaa aatccgaaca       360
     ccgatccgtt tggcctggtg atgtgttctc ccgtgttgct gcgaattctg ttccagttcc       420
     tgcggaatcg tgattcatcg tcgacgctcg gcagctgcag ccactagctc cttctgctgc       480
     tttcgttgtc acgaaattgc tcgctgcttt cctgattcct taaagagttg cattcccgtt       540
     cttgtcagaa caggattttc aggaggcaga cgatgcagag tgacgattgc ttggcaagtt       600
     ggagttggtg caatttgatg aagggatttg ccgagttctc cctgtgaata ttgcgtcatt       660
     gttggcagtc agccaactgg tccttcggaa gtttttcatc gttggcgttg tggccaaca        719
//
ID   BEL-937_AA-I repbase;    DNA;    INV; 5597 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-937_;
KW   BEL-937_AA-I; BEL-937_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5597
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5597
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4591-4591 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(596..2509,2470..4389,4393..5562)
FT                 /product="BEL-937_AA-I_1p"
FT                 /translation="MVRLECLMDRLSTTSGAQPTVAVGQQPVIIQQQPLKA
FT                 PIPTFDGRYENWPRFKAMFTDIITRCADSDAIKLHHLEKSLIGAAAGIIDS
FT                 RTLADNNFSHAWEMLKERYENPRVIVDTHIGGLLSMKKMSKESHTELRKLL
FT                 DTCTRHVEGLKFMEQEIDSTSGLIITKILTSCFDPSTRKHWERSLTHGELP
FT                 SLEETLQFLKEQCSVLERCECDQPKLQHNVKQPFVKPSNIKIHATTSDTNN
FT                 VVCQVCGKEHFNYQCPEFCKLSTSERVSKVRSCRLCFNCLRQGHRSVDCPS
FT                 KKCCSKCNKRHHSLLHEDSKVESNVKSPENSAPSENTNQISQSSANISSTP
FT                 TPSVVSPCSVICTATLPNTLLLTAVVNLIDKNGYHIPCRAFLDCGAQTNLL
FT                 SFPMYRKLGFEGTPIEVDLVGVSNVRSRSYRVVEVQLVSRYTEHSSVLKCL
FT                 VTPRITTTLPSEPIDISQWNIPAGLFLADPGFHIPADVDLLIGVGQFFRLL
FT                 KQGHLIIADGLPELRETELGWVIAGEIQDEVSAVVPVQVNTVTTEVLNESI
FT                 KRFWEIEEIASVSPKTTEEQECENVFQNTHYRDSSGRYVVRLPFRENVHEL
FT                 SDNRSVALRRFMFLERRLCKNPELRNEYSKFIEEYTSLGHIFQVHRRIYVF
FT                 RALKEVREIDDAAGALKYYMPHHAILKPNSSSTRLRVVFDASAKSAPSSVS
FT                 LNDVLQVGAVVQSDLFAILLRFRKHRFVFTADITKMYRQILVDPSQTSFQH
FT                 IFWRSHPSAPLRVFELLTVTYGTSAAPFLATRCLTQLCDDEATEFPLASRV
FT                 IREDCYIDDVLSGEETIERAIECKNQIQGMLKKGGFPVHKWCANNDLILQD
FT                 VPDCEREKLIQIDQLSDNEVIKTLGLMWNPANDQFLFAAASCSEESKPVTK
FT                 RIVFSKISQLFDPLGFLSPVIVLAKQIMQKTWAAQIDWDTELEGSLLDSWE
FT                 QFQSSLSRVNDIKIPRHITAKPYECLELHGFADASGIAYGACLYIRSVHFD
FT                 GTVSSTLLCSKSKIAPLQEMTIPRKELCAALLLSRLVRKVVPALQMNFANI
FT                 QLYSDSQIFLAWVQKSPTTLQLFVRNRIQEIVEVNGHSKWSYVRSKENPAD
FT                 VVSRGQLPGMLKTNSMWWEGPSFLRSSEYEPETLVSIPDCELPEIKCTPIV
FT                 AVSVLNIDRLPVFERFSSFRKLQRVLAYVQRFIRNCQLKNPSSRILNKFPT
FT                 VSEMRSSLHTIVVIIQHDGLLEEIQRVENQEPCKTIAMLGPFLQDGALRVG
FT                 GRIQKSQLPVHTKHQYIPKHRLTDLIIRTYHEENLHVGPNGLLSALRQRFW
FT                 ILGARSAVRKITKQCVRCFRVKPKNVSQYMGNLPKSRVTPAAPFEVSGVDY
FT                 AGPFSIKQGSRKPVLVKSYISVFVCMVTKSIHIELVSDMTAAAFIAALHRF
FT                 VGRRGLVRELHSNNGSNFRGAKTELHDLYNLFRDETAMNEVEAFCHTREIE
FT                 WHFIPPEAPEFGGLWESAVKSTKFHLKRILKDTPLTYEELSTLLIQTEAIL
FT                 NSRPLFSLSTDPTDEEVITPAHFLIGRPLNAVPEPSYEGISKHRLSRFQHI
FT                 QQMREHFWKAWVRDYLSSLQLRGKNRERFSNVRPGMIVVLHDKNLTPQNWK
FT                 LGKIHAVYPGEDDLVRAVDVKIGDLIFRRPITKLSILPIEDNSQSAGDKH"
XX
SQ   Sequence 5597 BP; 1525 A; 1254 C; 1256 G; 1562 T; 0 other;
     tattggtcct actcgagccg gatagtgaac aagaagaatt ccaagtgtga agaacaaatt        60
     gtggtccact tcatggaaag tgtttgaaaa cgtttgccgt gaccgagaac ttctgttgcc       120
     tgttgtggaa gcacaaatac tgtgacaagt gaacatgaac aagattgaac gaagaacata       180
     acctcgaaca gtgagtgaaa ctaaccaaga agaagtgatt ttctcgcgtg attggcatcc       240
     tgtgagttct cgtcggttgc tattctaagc aacatttccg ttaccgatgt cagtcaagca       300
     tacacctgag aaaacaacca agccgtccaa gatggaggat atcctgaagt cgctcgtcca       360
     tcaacgtggt gctgtcaaag gtaaagttac cacaatcgtg cagactcttg agagaggaga       420
     agatgatttg gctcaggtaa gtcttcctta gcttaaagtg ttcagtaaga aacttgaact       480
     gcattatgcg gaatattgct ccctccataa agaagtcatc gccgtgtccc ctgccggcaa       540
     acttgacgaa caagatttaa agttaactga gtttgaacaa ttgcatacag acgcgatggt       600
     acgtcttgaa tgtttaatgg atcgtttgag caccacatct ggtgcacagc ctactgtggc       660
     tgttggtcag caaccagtca tcatacaaca acaacctctc aaagctccca tacccacttt       720
     cgatgggagg tatgaaaact ggccacgatt taaagcaatg ttcactgata ttattacccg       780
     gtgtgccgat tccgatgcaa ttaaattgca tcatctcgag aaatcattga ttggggctgc       840
     agctggaatt attgactcaa ggactcttgc ggacaataat ttcagccacg catgggaaat       900
     gttaaaagaa cggtatgaga atcctcgcgt aattgtagac acgcatattg gcggtctact       960
     ctccatgaaa aaaatgtcca aggaatcaca cactgagttg cgaaaattgc tcgacacgtg      1020
     tactcgacat gttgaagggc tcaaatttat ggagcaggag attgatagca cttcagggct      1080
     gattattacg aaaattttga cgtcctgctt tgatccgtct acacgtaagc actgggaacg      1140
     ttcgctcaca catggtgagc taccgagcct agaagaaacc ctccaatttc tcaaagagca      1200
     atgtagtgtt ttggagcgat gcgaatgtga tcagccaaag ctacagcata acgtcaagca      1260
     accgttcgtg aagccgtcca acatcaagat tcatgccacc acatctgata ccaacaacgt      1320
     agtctgccag gtgtgtggca aggaacactt caactatcaa tgtccggaat tctgcaagtt      1380
     gtccacctca gaacgtgtgt ctaaagtgag aagttgtcgt ctttgtttca attgtctgcg      1440
     ccaaggccac cgctcagtag actgtccatc caaaaagtgt tgctcaaagt gtaataagcg      1500
     tcatcactca ttgcttcatg aagactccaa agtcgaaagt aacgtcaaat cgccggaaaa      1560
     ttctgctccg agcgaaaata ctaatcaaat ctcacagtct tcggctaata tttcgtctac      1620
     tcctactccc tcggttgttt cgccgtgttc agttatctgt acagccacct tacccaatac      1680
     gttgctccta acagcggtcg ttaatctaat tgataaaaat ggttatcaca ttccttgtcg      1740
     tgcattcctg gattgcgggg cacaaactaa tcttttgtct ttcccgatgt acagaaagct      1800
     gggttttgaa ggcacaccta ttgaagtcga tttagtcggt gtgagtaatg tgcgaagtcg      1860
     gtcttatcgc gttgtggagg ttcagctagt ctcacgatac actgaacact cgtcagtttt      1920
     aaaatgtttg gttactcctc gaatcacaac tacgcttccg agcgaaccga ttgatatttc      1980
     ccagtggaat attccggccg gattgtttct ggcagatccg ggtttccata ttccggctga      2040
     tgttgatctg cttattggcg ttggtcagtt tttccgattg ttgaaacaag gtcatctgat      2100
     tattgctgat ggattgcctg aactacgtga aacagaatta ggttgggtaa ttgcaggaga      2160
     gattcaagat gaagtttccg ctgtcgttcc cgttcaagtg aataccgtga caaccgaagt      2220
     cctgaatgaa tcgattaaac gtttctggga gatagaagaa atagccagtg tatcaccgaa      2280
     aactactgaa gagcaagagt gcgaaaatgt ctttcagaat acccattacc gcgattcttc      2340
     tgggagatac gtcgttaggc ttccattccg agaaaacgtc catgagctga gtgacaatcg      2400
     ttcagttgct ctccgccgtt ttatgttcct tgagcggcgg ctgtgtaaga atcctgaact      2460
     tcggaatgaa tattccaagt tcatcgaaga atatacgtct ttagggcatt gaaggaggta      2520
     cgcgagattg atgatgccgc aggagctctc aaatattaca tgccgcacca cgccattctg      2580
     aaaccaaaca gttctagcac aaggcttcga gtcgtttttg acgcctcggc caagtctgct      2640
     ccgtcttccg tctctttgaa tgatgtattg caagttggtg cggttgtaca gagcgatttg      2700
     tttgccattc ttctaaggtt tcgcaaacat cgtttcgtat tcactgctga catcacaaag      2760
     atgtacagac agattctcgt tgatcctagc cagacgtctt ttcagcatat cttctggcga      2820
     tctcatccat ctgcccccct tcgtgttttt gagttactaa cagtaactta tggaacttct      2880
     gccgcgcctt tcttagctac ccgatgccta acacagttgt gcgatgatga agctactgag      2940
     tttccgttgg cttctcgggt tattcgggag gattgttata tcgatgacgt tttgtctgga      3000
     gaagagacta tcgaaagggc aatcgaatgt aagaatcaaa tccaaggtat gttgaaaaaa      3060
     ggtggctttc ccgttcacaa gtggtgtgca aacaatgatt tgattctgca ggatgttcct      3120
     gactgtgagc gagagaagct aatccagatt gatcagctgt ccgacaacga agtgataaaa      3180
     acactcggtc ttatgtggaa tccagcaaat gatcagtttt tgttcgccgc agcgtcttgt      3240
     tctgaagaat ccaaacccgt taccaaaaga atcgtttttt cgaaaatttc gcagttgttc      3300
     gatccactgg gttttctatc tccggttatt gttctagcca agcaaattat gcagaaaacc      3360
     tgggctgctc agattgattg ggacaccgaa ttggaaggtt ccctattgga tagctgggaa      3420
     caattccagt catcattaag tcgtgttaat gatatcaaaa tccctcgcca cattaccgca      3480
     aagccgtatg agtgcctaga attacacggt tttgctgacg cttccggaat tgcctatgga      3540
     gcttgcctct atattcgaag tgtccatttt gatggtactg tttcatccac gttgctttgc      3600
     agcaaatcta aaatcgctcc actacaagaa atgactatcc ctcggaagga gctttgcgct      3660
     gctttgcttc tctcccgtct tgttcgaaag gtcgtgcccg ctcttcaaat gaattttgcc      3720
     aacatccagc tctattcgga cagccaaatc tttttggcat gggtgcaaaa atctccaacg      3780
     acattgcagc tattcgttcg aaatcgcatc caggagatcg ttgaagtcaa cgggcattct      3840
     aaatggagtt atgtgagatc aaaggagaat ccggcagatg tggtatctcg cggtcaactt      3900
     cctggtatgc tgaaaaccaa ttcgatgtgg tgggaaggac cgtcttttct tcgaagtagt      3960
     gaatatgaac cggaaactct tgtctcgatt ccggactgtg agttacctga aatcaaatgt      4020
     accccaatcg ttgccgtttc cgtattgaac atcgacaggc tccctgtttt cgaaaggttc      4080
     agttcctttc gaaaattgca acgtgtgctt gcgtacgtcc aaagattcat tcgtaattgc      4140
     caattgaaaa atccttcgtc acgaattcta aacaagtttc ctaccgtgtc tgaaatgaga      4200
     tcatcgttgc atacgattgt ggtaatcatt cagcacgacg gtctgcttga ggaaatacag      4260
     cgtgtagaaa atcaggagcc ttgtaaaact attgccatgc taggtccatt cctgcaagat      4320
     ggtgcattac gagtaggagg aagaattcag aaatctcagt tgccagtaca caccaagcat      4380
     caatatattt agcccaaaca tcgtctaacg gatcttatca ttcgaacgta tcacgaggaa      4440
     aacctacacg tcggccctaa cggtcttttg tccgcactta ggcaaaggtt ttggatacta      4500
     ggtgctcggt ccgcggtccg taagattacc aagcaatgtg tgaggtgttt tcgtgttaag      4560
     ccaaagaacg tctcgcagta tatgggaaat ttaccgaaga gccgagtaac accagcagca      4620
     ccttttgagg tgtctggggt cgattacgcc ggaccttttt caatcaagca agggtcccga      4680
     aagccggtac ttgttaagtc gtacatatcg gtgttcgtat gtatggtcac taaatctatt      4740
     cacattgaac tagtgtcaga tatgacagct gccgcgttca ttgcggcatt acatcgattt      4800
     gtcggacgca ggggtttagt gcgcgagctc cactcaaata acggtagtaa tttcagagga      4860
     gccaaaactg aactgcacga tctctataac ctctttcgcg atgagactgc catgaatgaa      4920
     gttgaagcct tttgtcatac tagggagatc gaatggcatt tcattccccc agaagcccca      4980
     gagttcggcg gtctctggga atccgccgta aagagtacta aatttcacct caagcggatt      5040
     ttgaaggata ccccgttgac atacgaagaa ctttccaccc ttcttattca aacagaagcc      5100
     attttgaact ccaggccgct tttttcgctc tccaccgacc caacagacga ggaagtaata      5160
     actccggccc actttctgat cggacgtcca ttaaacgcag ttcccgaacc ttcgtacgaa      5220
     ggaatcagta aacaccgtct ttcacgtttt cagcatattc aacaaatgcg tgaacatttc      5280
     tggaaggctt gggtccgtga ctatttgtca agccttcaat tgagaggtaa aaaccgcgaa      5340
     cgattttcga atgtgcgacc agggatgatt gtagttcttc atgataaaaa tctaactcct      5400
     caaaactgga agctgggaaa gattcatgct gtgtatcccg gtgaggatga tcttgttaga      5460
     gctgttgatg tgaagatagg agatctaatt tttcgtcgtc ctatcacaaa actttccatt      5520
     ttgcctattg aagataattc tcaatccgct ggtgacaaac attaactcga cacgattaat      5580
     tcttgcccgg gggagta                                                     5597
//
ID   BEL-937_AA-LTR repbase;    DNA;    INV; 765 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-937_AA-I;
KW   BEL-937_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-765
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-765
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4588-4588 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 765 BP; 191 A; 169 C; 190 G; 215 T; 0 other;
     tgttcgcgaa agcgaagaca ttttggcaac actgacacca ctgacagcat tttctgagca        60
     cggcatatga gcgtcacaac caccgcataa agtgccggca gttggctgcg catcacagtg       120
     gaactcttcc agtcccactt ccagtgaatt ttgtttgtgt gtatgtgttt tttttctcta       180
     ccttactgcg caaaggcgcc taaccaatca gaagaaagat gatgcaatcg catcgaagaa       240
     agagggtata aaacgggggg aacatttgta atcgttgatc agttattatt gtacgactat       300
     actgtacgga ataaaggtaa aagtaaaagt gaattgcctc attattatca gccgatcatc       360
     cgaaactcgt cggcagcagc gaatttctac cgtttgaacc gaaagtggtc aatttcgtcc       420
     ggagctgtac ttcgcagaga ttgtgatgtg gaagattgtg ccgttccggt tttggatgct       480
     gctgttcctg cgaattcatc gtcgtccatc catcctcgga aactgtacct gctagctcca       540
     ttgccttcat ggtcgccgat tgttctgcct gccgctttac aaagagttgt ttcaatccag       600
     ctcttttcag agctagattt ctaggaggca gacaatgcgg tgtgactttt gaatggcaaa       660
     gaggagtcgg tggaagcagt cagccatccg agcgattccg gtggaaaatt tggtggatgt       720
     tttgtcatct ggtccttcgg agtccatgtt ggcaatgggc caaca                       765
//
ID   BEL-938_AA-I repbase;    DNA;    INV; 5780 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-938_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5780
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5780
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5780 BP; 1750 A; 1166 C; 1436 G; 1428 T; 0 other;
     tatggtcctt cgacatcgaa tttacgcgcg gcggattaca gttacatgct tagaagccgg        60
     gataagccga aaatgcagat ttttgtcggt gaaacgcgag ttgctgaaaa tgtggacgct       120
     gcacagccgg acgaccttcg gctcttgcat caaattctat atggttcgga caccacactc       180
     aactggatta ggagaaaagt gcagaagttc gaaggatttg atttcggatt gcgctctcct       240
     cagtttgcag atagattgaa ccttatagag aatgcaaaaa tagagaaggt agcgaaaacc       300
     tgcgagctgc ttgaaattcc aattggaaaa caagacacgg caaagcaact gtctcttgct       360
     ataatgcaga aaattttcca tttgagtaat gcgtctcttc caggagctac caatcaggac       420
     tatcaggcgc aaatttcacc gtcactgttg actcagtcta cggaatatgg atttacgatc       480
     aacagccgag taaacaatcc attccgcaaa gaaccatctc ttgcggatag cagagcatcg       540
     agcagaacag cgcaggtaac agtgatgcga gccaaatttg atgctgggaa aaagttggct       600
     gagctagagg agcaacaagc tcgcgaaaag agacagcgtg ctgagaaagt gctgaaagca       660
     gaaatggaac tgaaaattgc agaggcggcg ttggcagaag agctagagca aacctcgggt       720
     gtggctcgag tcgaccagtg tttccagaat gtgcaggata cagatccaac agaacgagtg       780
     caagagtgga ttcaaaattt acgagcacaa acgagttcga cgatggaatc ttccttcgca       840
     ggaaacaacc aggtacaagt tgaatgttat tcaagcccaa caagacacaa cgatcaacgg       900
     acacaagaga gttccagcgt agacacggaa atgttgcgga ttaccaaatc gatgcagagg       960
     atgctggcta gaacaacggg aggagaatca ctaccgattt tcgatgggaa cgttaaagag      1020
     tggccgctct tcgtcaacca gtaccgtctt acaactacag ctggtgaata cactggaacg      1080
     gaaaacgtcg tacgattgaa taaatgttta acgggaaaag caagggaagc tgttcagcat      1140
     atgcttatgg cttcgacgga tgctgaagag attgtaaagg ccctggagct acgttttgga      1200
     agacccgagt tgctgctacg agctttgatt caggaaataa aagtacttcc gaacgtctac      1260
     aactgggaat ccttcataga gtttgatagt gttgttcgta acctgactgc tggaatgaaa      1320
     gggttaaaac atcacattta taatcctgaa cttctttgtt tgctgctgca aaaacttcca      1380
     cagtatcaga cgattatgtg gggtaaattt gtcactgaag aaaacatttt ggagcccaca      1440
     gtgatcgact ttgcaaaatg ggttgaacaa atggcaaagt atgcttcatg cgtcaactac      1500
     acattggcgg ctggaggaat tttcggagat acagctcaaa caaacagcgg ctgtaggcaa      1560
     gaaaaccgtg gagtagacag caagaaatgt cctgtctgtc aaagagagaa tcatgatgtt      1620
     acgtcgtgtg ccatgttcaa ggattcggat ccgaaacgcc gatatcaatt ggctgttgaa      1680
     agcaagctgt gcttctgttg cctgcgctcc cacagtggac gatgtgagag acgacaacaa      1740
     tgtcctgtgg aaggctgcaa tcgataccat cacggattgc tgcataaagg tgagaaacca      1800
     aatgctccaa tagcattgca ccaagaaaag ataaacgtaa atgcggttgg ttcagaacaa      1860
     cccaaactgt accaagctct tttgaaaatt attcccgtcc gaatccgtgg tcttaaggga      1920
     accacagtgg tgcctgcttt attggatgag ggttccagtc tatctctcat cgattctgac      1980
     ctggcagact ttgttgggat aaccggttac cgaaagccat tatgctgtac actgatgggt      2040
     ggttcgaagc gatctgatga gcattcagag gttgtagagg tagacgtcgg gccgaacgaa      2100
     caaaatgcac aattcttcac gctgaaagga attcgcacgg tgaaaaattt gaatttaaat      2160
     ggacaacggg ttgacgtaat ggcaatggtt tcgcaattcc catacgttaa aaccgccaat      2220
     cttgaatgct tggacggccg atctccaatg ctgcttattg gacaactgca cattaaagta      2280
     attcaggcga ctgaaatgta tcaacctgac caaaatgctc cagcaatctc aaaatgtttg      2340
     ttgggttggg ctgttcacgg accgtaccac atggaacatt gtggatcaca aggcgtcaac      2400
     gtttgttgtg atgaaaatga tgatttacac aatcttgttg catcgtatat tttgcttgaa      2460
     aatatgggca ttgtacagaa caaggttgat cgtcaacgct cagaagatga tcggcgtgct      2520
     cttaatatcg ttgaacaatc agcgaaatat gcgaacggtc atttcatcgt gaatcttccg      2580
     tacaaaataa ccacgccgtt tccggaaagc cgtaatttag cattatcacg gttgaaatgt      2640
     actgaacgca agattcaaaa gcttgcgata tctgaaaaat atgcagaaaa aatacatgag      2700
     tacattgcaa aagggtacgc tgttacagtt accgaagagg agctaaaaat gaagcgaaac      2760
     aacttatggt atctgccaca tttccctgtg ctgaatcgaa tgaaacccgg aaaagttcgt      2820
     gtcgtgtttg acgcagcggc caaatccaac ggaatgtgtc tcaatgatgc tctcctatcg      2880
     ggtccagatc tgttgaagcg actgttcggt gttctgttac gatttcgaat cggaaaaatc      2940
     ggattcgttg cagacattgc tgaaatgttt caccgtatag agatagcaga tgaagattca      3000
     tgatccatgt gttttttgta ccgaaaggat cctgcagaaa aaccaaaaac gtaccggatg      3060
     aaggcaatga ttttcggtgc aaattcatct cctttcattg ctcagtacat caagaatctt      3120
     aatgctaaac tacatgctaa cctgtatcca gatgcttgtg ctctgatagt gaacgatcac      3180
     tatgtggatg attgcttggg aagccatgac gatgaagatc aagcagcaga gctgattcag      3240
     gatgttatcc aggtacaccg agcaggagga ttcaccatcc gaaacttcag atgcagttca      3300
     agccaggtga tggaaagtat accagaagac ttgcgtgcta gttttaccgc ttctgaaatt      3360
     ggtgactgtc agcaacgagt tctaggccta ctgtgggata gcgaaaatga ttgttttctg      3420
     ttttctccta cactgaaccg aattgattca gtgcttctga acggtgaacg tgtgcccact      3480
     aaaagagaaa tgttatctgt tgtcatgtct gtatacgatc ccttgggatt tgtgacccct      3540
     ctgaccatcc gaggacgaat tttgatgcaa caagtttggc gaagtggaat cggatgggac      3600
     gatcaattag acgatgaagc aagacagaag tgggttatat ggttacgaaa cttgaaagtt      3660
     gtcacagacg tgcagatacc ccgctgttac agcaaatata tcgagcaagg tgacaaaatc      3720
     gaacttcacg tattttgtga tgcaagttcg aaagcatttg cagcagtcgc ctatatgcga      3780
     gttgtgagga aagatcagtt tgatgttgct tttgtttctt cgagagccag agtagctcca      3840
     gtgcgtgcta tgacaatccc gaagttagag cttcaagcag cattgttggg atatcgcctc      3900
     tcactgttga ttaaagagga attgctcgaa aaatttgaaa aggtgtacta ctggactgat      3960
     tccagaacgg tcatttgctg gctgaatacc aggaaagcac tgaagtcgtt cgttgccaat      4020
     aaggttggag aaatattgga gcagtcaaca tcagctgatt ggagatggat ttcgacttcg      4080
     attaatgtgg cagacgaagg aacgagggat gcaggtgtgc taaacctcaa gccggaagga      4140
     agatggttcc gaggtccgga atttttacgg caaactgaac aaaagtggcc tgtcttctca      4200
     gatccagtag aaacagtaga ggcacatgaa gagttttcga acgaagtgat tgcagttaac      4260
     accgtaactg aatcggatac agagttacca gacgtcctgc gatttagtaa ttggagaaga      4320
     ttaatacgtg caacagcatt cttttacaaa agcatcgagg tttggcgcaa aagggctacg      4380
     ctaccaatca caccggatga tgaagaagcg gcgaccagac gttggataaa gtgtgtgcaa      4440
     aatgaacaat ttccggaaga acttcgagca ttacgagacg cgagaacgct gaagtcatcg      4500
     aataaactga gcaaattatc tccatttttg gatggcgacg gactcttgcg tgcgggagga      4560
     agactgaaga acgcaaaagt tgatgagaca attcggaatc caataatatt aacggaagcg      4620
     gtaatttcgt gcgattgtta gtgctaaact accactgcca agccaaccat cagggtcgtg      4680
     agacagttct gaacgaactt aggcaaatgt actggatcat tggcgtcagg aatgtacttc      4740
     gatcagtgat ctacaaatgt caacgttgtc gagtgctgaa acctgaagtg atgcagccat      4800
     cgatgggaca acttccagaa tgccgcttac aaccatactg tcaaccgttc acgtattgcg      4860
     gtatggattt tttcggccct tatgaggtca ctgtcggacg tcacagagag aaacggtatg      4920
     gggtgatatt cacgtgtatg acgactcgcg caatacacgt cgagatggca cattcgttaa      4980
     ctaccgattc gtgcatcttg gcgctacgcc gcatgattgg aagacgacga aaaccggaag      5040
     aaattttttc cgataacggc acgaacctac ggggagctga tcgagaactg cgcgacgcct      5100
     tgcagcacac gagtttttcc gatattgaag atgcagtttt actccgagga attaaatgga      5160
     agtttaaccc tcctgcagcg agtcacatgg gaggcgcatg ggagcggtta atcaggagcg      5220
     tccgaaccgc tttaagagaa actctgaaag aacgagcacc gcgacaggag gttttacaaa      5280
     cagttttggt cgaagctgaa catctcgtta acagcagacc gttgacttat gtttcgactg      5340
     atttgaacga tcctgaagct ctaaccccaa ataatttttt gattgggact acaagcaacg      5400
     tgcagtcacc aggagtattc actcaatacg accttaattg gggaaagcaa tggagaagag      5460
     cacaggcact tattgattca ttttggaaca gatggcttag agaatatttg cctaatttga      5520
     ttcctaagca gaagtggacg gatcaactat ccgctttaca cccaggagat atcgtttata      5580
     tagccgatat gctcaatgat cgaggaaatt ggccaatggg cattattcag cagtgttacc      5640
     caggacaaga cggcgtagtt agagttgctg atgtgaagac gtgttccgga acctatcgac      5700
     gaccgactac aaagttgagg aaaatcgtaa tggaagtcaa tgatcgtgat gacaaaccag      5760
     tgtcacaccg ggtgggacaa                                                  5780
//
ID   BEL-938_AA-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-938_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-210
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-210
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4528-4528 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 210 BP; 71 A; 44 C; 42 G; 53 T; 0 other;
     tgtatggaaa cgatgacacc cctagccaag ccaacgacga cctccccaag agtggagtac        60
     gtagtctaaa cgagcggaag gcagttttct ttgaaaaccc gcgaatctat tgttataaga       120
     acacaagtac gcgacgtgat tgtacgcact acaatttcgc gaaaataaat aaatttgaat       180
     tcgataaaat tttcgtttgt attcgataca                                        210
//
ID   BEL-939B_AA-I repbase;    DNA;    INV; 4319 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4319
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4319
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4319 BP; 1034 A; 1188 C; 980 G; 1117 T; 0 other;
     tttggtccaa tcgaaccgga tagaggatcc agttccgtgg aagctgcaac cgcagccgtg        60
     tgtgtgtcgt caatcagcct attgagacaa tccctcccaa ttgctatcgc cgatagcaat       120
     cagcattcct accgagagga ttgctgtagt tcctgccccc ggtagctcga cccaaaagtt       180
     tagaaagaat attcctggtt tccattggtg gagaggaaac gaaattctcc aagcgaagta       240
     gtgaagatca gtgccagtga aaaagtccga atcattccaa ttccccgaaa gtaagacgcg       300
     cgcgtgtgaa gtgtgttccc gctctgaaat ggcagaagtg gaaagactgt ttgccgaacg       360
     tagccttgtc gaggcaagag tgaagcagct ccaggagaaa ctaaatgcga gagatggtgc       420
     aattcgaccc agtttggcac gagtgaaaca atacgacaac gaactgctgt gctattacaa       480
     gaagtaccag agagtgtatg gcgagttgct gtctgcattc ccagccgaaa ggtttgcaaa       540
     gttggatgca gattgcgagc gcttcgagga aatccatttc gatgcctgcg tattggtgga       600
     aaccttgttg ctttcctttc cgaccaccga taacaggtat cagcacagcc gagcgtcgcc       660
     atccagctat tttactgcgc cacgctggcg tagccgatcc ccgagcccaa cgacggaaca       720
     atccgttccg attccagacg tgatggagaa gtcaaacacg tcgccactga gaaagcattc       780
     cccagagaag caactgttcc cagcccaagc caacgaggtg aaggtgagtt cgagtgccat       840
     taacccaatc ccttccgtgc agccaccaag cgctgaaggt tccgcgaaat tgaatcctga       900
     gtgtgtacca gccctggtcc gatccgagcg tgatctcgct gaggtcacca agttgaagtc       960
     ggcagccctg tcgattgttc cgccttctga tgttccacca cttcagacgt tcccccgtga      1020
     agagagagtg ccaagcgctg aagcttttgc caagaagccg aaacctgtgt gtggaccagc      1080
     cctggtccgt tccgagggtg atctcgccga ggtcatccag ggcaagtcgg tacccacgcc      1140
     gattgtcccg ccttctgatg tgccaacact tcagatgtac ccccgtgaag agagtgtgcc      1200
     aaccaaaaat gagcaacccg cccatcgaga agaagattcc acccaccgtg gaaaagtgcc      1260
     aacgtggtgt gaagaggtga caaccgttgc ctaccaagac gagtcgaacc atccgtgcaa      1320
     gcagaatgag cattctgcta atccaacaaa gatgacccca gaggaattcc acgtcggcaa      1380
     tgagtcaacc caatttgtcg acaacgtgag caacattcca tcctgtgagg cgacgaaccc      1440
     gattccagtt ccaatcaacc tggttggaaa cgatccgaag ccgacgccgt tccagagaac      1500
     taccggatgt ggtgcgctac cgaagatgcc acccggtttt catccaccgc ccaggttgcc      1560
     atcgatgcca actgacgtgc ttccagtgcc caagaatcca gcagcaagtt cccgaccatt      1620
     tcagtgtgca accggttccc gtccggtgat ccagcggttc cattgtgtgg ctggatcccg      1680
     ctcaaatccc aacgagttcc cgagggcgat cggattgtgt ctggtcgcga tacgattccc      1740
     ttgtaggacc agattctgtc cagcgattcc atcccggttg gtcggattcc atccaacgcc      1800
     gcagcgattc ccgtgtgtgg ccggatccat tccggcattg aagcattcct ccaacttgac      1860
     cgaatctaat tcggtagtga agcctttcca gcgtgtggca aaattccgtc cagcttcgaa      1920
     gcagctatct catttgaccg gattccgtcg aacgccccaa cgattcccgt gtgtggccgg      1980
     atccattccg gcattgaagt attcttccag cttgaccgga tccaattcga tagagaagac      2040
     tttccaacgt gtgttcccag atgtggccgg atttcctccg gtaatgaagc agccgtccag      2100
     tgtgatggga taccagccgg tgtcccagag atttccagcc ccaagcgtat tccatttggt      2160
     ggccaagaag ttccaatgtg tggccagcat ccatccgatt cgtgagcagc catctagtgc      2220
     gacaagacct cgttcggttc tgtacccatt cccgccaagt gtcggatccc atccggcacc      2280
     agagaagcct ccagatgtga ccggtacccc tcctccggtc cccaagcctc cagatgtgac      2340
     cggtattcct cctccggtcc ccaagcctcc agatgtgacc ggtattcctc ctccggttcc      2400
     caagtcgttt cggttgccaa tcgaaatgaa tccagtgctg atgttcctgc tgccgaccgg      2460
     tatccttccg gtatccaagc aagccctgcc gtccatcgaa ataccttcga gtttcaagcc      2520
     ggttctgatg ccagccggca tccctccgat ggttaagcca cagatgagcg agatgtgtcc      2580
     agcgaagcac ccgtgtccag tgtcaaccag aagccatccg gtatccaagt ggttgcggtg      2640
     tccaaccacg attccaccga tagcgaggtc aatcccgaag atagccggaa tccatccggc      2700
     gaaagagcca accccgatgc ccaccggaaa acgtccggta ttaagcgaag ccccgaacct      2760
     gagattgacg aagaagatga tgccgccggt caacccgact ggtgattcca tgcaagccca      2820
     taccaagtcc atgccggaga aaccaccaaa tgaagccccc atgcgacgtc gagccagcga      2880
     agccatcccg gagtgcgtgt cccgtacgca tccacccgaa gatgttcatc aagtggtaag      2940
     caagctttcg atttgtggtg tgtgcctatt ccctatcctg gctcaaagtg gtttccccag      3000
     tctaccattg aagagtccca cccaaaacga tattgttgtt gatgagtttt ccgtccttcc      3060
     tatcttcaat gagttttcct tatcgccaat ttccgtctct ccgagtaagt tttgaatcca      3120
     tatgagtttt ccaccgattg attcccataa tacagtccac catcgaagag ccctacatga      3180
     aatgataatc cttccttttt cccttgttga gttgatttcc ctatcgttga tttcctttgc      3240
     ctacttgagt aatgtcgtat cgagtagtat ttaaagcctt gtgaaatgtt tgcccattaa      3300
     accaaaactc cttgcttgat atcctacttt atgattcgtg attccctctt atttgatcaa      3360
     gattgcgccc atgtgaattt tcctcccatt gagtttttga tcgttgaaat ccttccctcc      3420
     caagttttat gtgatgtttg ataccgtgac cacaaagaga ccgtttccct tgaaagacga      3480
     gtattccagc tagtattttt agctagtttc ctgattttga atttagattt gaaagttgtg      3540
     tcctccttag tttgcctcga ttccttatcc agtgtttgtt tagccctttc gcaaagtcaa      3600
     tagtttgcca aactttgaag ttttgtgtgc ccacagtttt gaattatgcc agttatcctt      3660
     aatacagtcc acaccgaatt gaagatgaat ctctaacatt tagtgtagtg atctaatgcg      3720
     cctgccatga attgccctta tgttcctgta acgcctgtgc cccttgtgta atgaaataga      3780
     aaagttcctt atagtaaccg aagtatattc tcctttattt cgattatttt cataagccac      3840
     ctaagccacc caagtgtgca aagtatttct actgcctaca gtgttgtcgc tgatatacct      3900
     aaccgtttcc tgaaattaga ttcttgatat cctgtgaaac aagcagttcc ttccgcaaat      3960
     cagtccgtag ttacttccat ccctttgaat tgattgttaa gcgtagtaag ctattgttcc      4020
     caccccgcaa gtccgttaga gttgagttcc ttagtcccct tttccgagca tgtttgtcgt      4080
     gatagcaaga cttgaattga ctaccccttt cctttctggc cagagtccat aagttcttaa      4140
     ggattggaaa gcctttgtga gtaaccgttg aaccatagag cattccacct tacaaatatt      4200
     ctgtttcctt actgacaatc cttttgagtc gagtccctga gtttctcatc accgtgagtt      4260
     tttgtcgtca taccaagtcc tccattgaat ccatcccttt tccttttggc cggggagta       4319
//
ID   BEL-939B_AA-LTR repbase;    DNA;    INV; 663 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-663
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-663
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4546-4546 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 663 BP; 171 A; 218 C; 124 G; 150 T; 0 other;
     tgttcgctcc aacgcgaagt ttctgagttg tgggtccttc ccacccctgt cccatctaac        60
     ctcgagccgc cgcgagtatt tcggcctctc atcccgacaa ctaacaacca ccccaaataa       120
     cccacacaca cgcaccacgt cgttagtttt gcttgcctcc ctttcccatc attccgaccg       180
     acatgatcaa gcatgtacgc aatccagccg accaaccatc cagcccagct atgtacaacg       240
     tgaacaagaa agcactacca ccacttcatc cagcatcgat cctgttgcag catcaccgag       300
     taatacatag caggcagaga aagtttccat cgcaacccca ccgctgcgca tgcaatgttc       360
     ttggctacct gtcacctata aaaggagctt gcatgcgcaa ggagattatt cagttttctt       420
     tcaaccatca ctctgtacaa atcgaagagg aataatatag tagtttagta aagttaccga       480
     accgcctttc cctccaccag tggaaaccaa acagcctttt ccaaggctag agttgctaag       540
     tcccccctcc agtcgagcta tcggtcctgt gccctgttgc tcccggcaac aggtggacgg       600
     aagatcatcc gatcgttccg ttcccgctca tccgagcaaa agtcccagtt gcacgccgca       660
     aca                                                                     663
//
ID   BEL-939C_AA-I repbase;    DNA;    INV; 4403 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939C_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4403
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4403
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4403 BP; 1064 A; 1238 C; 995 G; 1106 T; 0 other;
     tccaatcgaa ccggatagag ggtccagttc cgtggaagct gcaaccgcag ccgtgtgtgt        60
     gtcgtcaatc atccgattga aacaatccct cccaattgct atcgccgata gcaatcagca       120
     ttcctaccga gaggattgct gtagttcctg cccccggtag ctcgacccaa agtgttaaga       180
     aagaatattc ctggtttcca ttggcggaga ggcgacgaaa ttccccaagt gtagtgaata       240
     gacagtgaaa aagtccgagc acatttccaa tccgaaagtg agtcgcgcgc gagtgaaaaa       300
     gtttcgaaac atttccaccc gaaagtaaac cgcgcgcgtg tgttcctgtt ccagaatggc       360
     cgaagtgaaa aggctgttcg cccaacgcag cctcgtcgag ctaaaagtga agcggctcca       420
     ggagcagttg gttgacaggg atggtaccat ccgaccaagt cttgcacgag tgaagcttta       480
     cgaaagtgaa ctccagttcc tgtaccaaga ataccagaga gtgtacggtg agatcctgtc       540
     cgcaatccca gaagagagat tttcagaatt ggatgaggat tatcagagct tcgagaacct       600
     ccattttgat gcctgcgtgt tggtggaaac gatgttgctt tcctttccga ccaccgataa       660
     caggtatcag catagtcgag cgtcatcaac caactatttc cctgcgacca ctgtgccacg       720
     ctggcgcacc ccgctcgtac gtagtcgatc cccgagccca acgacggaac aatccgttcc       780
     gattccagac gtgatggagg agaaaaacac gtcgccactg agaaagcatt ccccagagaa       840
     gcaactgtac ccagtccaag ccaacgaagt gaaggtgagt tcgagtgcca tcaagccaat       900
     tctgtccgtg cagccaccaa gcgctgaagg ttccgcgaaa ttgaatcctg agtgtggacc       960
     agccctggtc cgttccgagg gtgatctcgc cgaggtcatc caatgcaagt cggcacccac      1020
     gccgattgta ccgccttctg atgttccaac acttcagaag ttcccctgtg aagagagagt      1080
     ggctagcgct gaagcttttg ccaagaagcc gaaacctgtg tgtggaccag ccctggtccg      1140
     ttccgagggt gatctcgccg aggtcatcca gggcaagtcg gtacccacgc cgattgtccc      1200
     gccttctgat gtgccaacac ttcagaagta cccccgtgaa gagagtgtgc caaccaaaaa      1260
     tgagcaaccc gcccatcgag aagaagattc cacccaccgt ggaaaagtgc caacgtggtc      1320
     tgaagaggtg acaaccgttg cctacgaaga cacgtccaac cctccgtgca agctgagaaa      1380
     gcatgctgct aatccagcaa agacgacccc agaggatttc catgtcggca ataagtcaac      1440
     ccaatttgtc gacagcctaa gcaacattca atcctgtgaa gcgacgaacc cgattccagt      1500
     tccaatcaac ctggttggaa tccgttcgaa gccgacgccg tcccagagag ctgccggatg      1560
     tggtgcgtta ccgaagacgt tacttatgcc acccggtttc catccaccgc ccaggttggc      1620
     atcgatgcca actgacgtac ttccagtgcc caagaatcca gcagcaagtt tccgaccatt      1680
     caagtgcgca accggttccc gtccggtact ccagcggttt ccctgtgtgg ctggattccg      1740
     cttaattctc aacgagttcc cgagtgcgat cggattgtgt ctggtcgcga aacgattccc      1800
     atgtaggacc agattccgtc cagcatcgat cccgtttggc cgagtcatcc cgtttggcca      1860
     gtcatcccgt ttggctggat tccatccaac gccgcagcga ttcccgtgtg tggccggatc      1920
     cattccggca ttgaagcatt tctccaactt gaccgaatcc aattcggtag tgaagccttt      1980
     ccagcgcgtg gcaaaattcc gtccagcttc gaagcagcta tcccatttga ccggattccg      2040
     tcgaacgccc caacgattcc cgtgtgtggc cggatccatt ccggcattga agtattcttc      2100
     cagcttgacc ggatccaatt cgatagagaa gcctttccaa cgtgtgttcc cagatgtggc      2160
     cggatttcct ccggtaatga agcagccgtc cagtgtgatg ggataccagc cggtgtccca      2220
     gagatttcca gccgcaagcg tgttccattt ggtggctaag aagttccagt atgtggccag      2280
     aatccatccg attcgtgagc agccatcttc tgcggccgga ccacgttcgg ttctgaaacg      2340
     attcccgcct agtgtcgaat cccatccggc accagagaag cctccagttg tgaccggtat      2400
     tcctcctccg gatgtgaccg gtattcctcc tccggttccc aagcctccgg atgtgaccgg      2460
     tattcctcct ccggtcccca agcctccaga tgtgaccggt attcctcctc cggttcccaa      2520
     gtcgtttcgg ttgccaatcg aaatgaatcc agtgctgatg ttcctgctgc cgaccggtat      2580
     ccttccggta tccaagcaag ccctgccgtc catcgaaata cctgcgagtt tcaagccggt      2640
     tctgatgcca gccggcatcc ctccgatggt taagccacag atgagcgaga tgtgtccagc      2700
     gaagcacccg tgtccagtgt caaccagaag ccatccggta tccaagtggt tgcggtgtcc      2760
     aaccacgatt ccaccgatag cgaggtcaat cccgacgata gccggaatcc atccggcgaa      2820
     agagccaacc ccgatgccca ccggaaaacg tccggtattg agcgaagccc cgaaccagag      2880
     attgaccgag aagatgatgc cgccagtcaa cccgactggt ggttccaagc aaccccatac      2940
     catgtccctg tcggagaaac caccagatga agcccccatg cgacgtcgag ccagcaaagc      3000
     catcccggag tgcgtgtccc gtacgcatcc acccgaagat gttcatcaag tggtaagcaa      3060
     gctttcgatt tgtggtgtgt gcctaatccc tatcctggct caaagtggtt tccccagtcc      3120
     accattgaat agtcccactc aaaaccgata ttgttcttga tgagttttcc gtccttcctg      3180
     tcgtcaatga gttttcctta tcgccaattt ccatctctcc gagtaagatt tgaatccata      3240
     tgagttttcc accgattgaa tcccataata cagtccacca ttgaagagcc ctacatgaaa      3300
     tgataatcct tccttttccc ttgttgagtt gatttccatt gcctacttga gtaatgtcgt      3360
     atctagtaga atatgaccct gtgaagtgtt tgccaattaa ttccaaaatt ccaagtttga      3420
     tatgacatta tgtgatccgt gattccctct actttgatca agatgttagt ccatatgaat      3480
     tttcctccca ttgagttttt gatcgttgaa atccttccct accaagttgt atgatgtatg      3540
     ataccgtgcc cactaagaga gtgtagccga ttccctcaag ttaccaatgt tccatttcgt      3600
     gacagttaga tagcgtcgta accaaccttt tatccaacct tgaatttcca tctgaaagtt      3660
     gtgtcctcct tagtttgcca cgattcctat ccagtgtttg ttaagctctt tcaccgagtc      3720
     aaaatagatc gccaatcctt attgaagctt atgtgtccac aatgcctaat agtatccagt      3780
     tatccaaata cagtccacaa gtattgatac atccgtgtaa atccccaaca tttgagttag      3840
     tatggcagtc taccataaac tgcccaccaa tgtgcccttt gtgtaagaga ttgaaaattc      3900
     cttgcagtgc ctgaagaaga attctctttt ccctcgatta tttccccacc caccaagatt      3960
     gaactatttc agaagtgtgc aaagagttgc tgcctaaagt gtgtcgctga tataccttac      4020
     tgtttcctga aattagattc ttgatatcct gtgagtcaag cagttccctc cgcaaatcag      4080
     tccgtagttc cttccatccc tttgagatta tctgttaagc cgtagtaagt taatgtttcc      4140
     atcctaccaa tcctagagtt gacttgctga gttccccctt tccgagcatg tttgtcgtaa      4200
     taagccagtc ttgaattcac catccctttc ccttttcggc cagagtctat aagtttttaa      4260
     gaaatggaag cctttgaaat gttatctttc caccctgaca gttcttatga gtcgagtccc      4320
     tgagttcccc atcaccgtga attttgtagt cataccaagt cctccattga acccatccct      4380
     ttacctcttt tggccgggga gta                                              4403
//
ID   BEL-939C_AA-LTR repbase;    DNA;    INV; 637 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939C_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-637
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-637
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4589-4589 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 637 BP; 161 A; 206 C; 113 G; 157 T; 0 other;
     tgttcgcgcc aacgcgaagt ttccgtttgt atgtgtgtcc ctcacacccc tgtccctact        60
     aatctcgagc cgccgcgagt atatcggcct ccaataccaa actaacaacc accccaaata       120
     actcacacac acgcaccacg tcgttagttt tgcttcccct ttccatcctt ccgagcgaca       180
     tgatcgaata tatacctgta cgcagtcaag ccgaccaacc atccatccca gctatgtatt       240
     gcgtgaagac acccgcccga gcatcgttcg ctcagtaata catagcatgc agtggaaatt       300
     tccaccatcg tccccacacc gctgcgcatg caaagttgtt gtttacctac agcctattta       360
     agaaacttgc atgcgcaaga ttccattcag tttctttcca accattatat tattaacctc       420
     gatagaaata cagtagttaa gttaaagtga accataccgc ctttccctcc accagtggaa       480
     accaaacagc cttttccaag gctagagttg ttaagtcccc cctccagtcg agctatcggt       540
     cctgtgccct gttgctcccg gcaacaggtg gacggaagat catccgatct ttccgttccc       600
     gctcacccga gcaaagtccc agttgcacgc cgcaaca                                637
//
ID   BEL-939_AA-I repbase;    DNA;    INV; 4332 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4332
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4332
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4332 BP; 1034 A; 1189 C; 986 G; 1123 T; 0 other;
     tttggtccaa tcgaaccgga tagaggatcc agttccgtgg aagctgcaac cgcagccgtg        60
     tgtgtgtcgt caatcagcct attgagacaa tccctcccaa ttgctatcgc cgatagcaat       120
     cagcattcct accgagagga ttgctgtagt tcctgccccc ggtagctcga cccaaaagtt       180
     tagaaagaat attcctggtt tccattggtg gagaggaaac gaaattctcc aagcgaagta       240
     gtgaagatca gtgacagtga aaaagtccga atcattccaa ttccccgaaa gtaagacgcg       300
     cgcgtgtgaa gtgtgttccc gctctgaaat ggcagaagtg gaaagactgt ttgccgaacg       360
     tagccttgtc gaggcaagag tgaagcagct ccaggagaaa ctaaatgcga gagatggtgc       420
     aattcgaccc agtttggcac gagtggaaca atacgacaac gaactgctgt gctattacaa       480
     gaagtaccag agagtgtatg gcgagttgct gtctgcattc ccagccgaaa ggtttgcaaa       540
     gttggatgca gattgcgagc gcttcgagga aatccatttc gatgcctgcg tattggtaga       600
     aaccttgttg ctttcctttc cgaccaccga taacaggtat cagcacagcc gagcgtcgcc       660
     atccagctat tttactgcgc cacgctggcg tagccgatcc ccgagcccaa cgacggaaca       720
     atccgttccg attccagacg tgatggagaa gtcaaacacg tcgccactga gaaagcattc       780
     cccagagaag caactgttcc cagcccaagc caacgaggtg aaggtgagtt cgagtgccat       840
     taacccaatc ccttccgtgc agccaccaag cgctgaaggt tccgcgaaat tgaatcctga       900
     gtgtgtacca gccctggtcc gatccgagcg tgatctcgct gaggtcacca agttgaagtc       960
     ggcagccctg tcgattgttc cgccttctga tgttccacca cttcagaagt tcccccgtga      1020
     agagagagtg ccaagcgctg aagcttttgc caagaagccg aaacctgtgt gtggaccagc      1080
     cctggtccgt tccgagggtg atctcgccga ggtcatccag ggcaagtcgg tacccacgcc      1140
     gattgtcccg ccttctgatg tgccaacact tcagatgtac ccccgtgaag agagtgtgcc      1200
     aaccaaaaat gagcaacccg cccatcgaga agaagattcc acccaccgtg gaaaagtgcc      1260
     aacgtggtgt gaagaggtga caaccgttgc ctaccaagac gagtcgaacc atccgtgcaa      1320
     gcagaatgag cattctgcta atccaacaaa gatgacccca gaggaattcc acgtcggcaa      1380
     tgagtcaacc caatttgtcg acaacgtgag caacattcca tcctgtgagg cgacgaaccc      1440
     gattccagtt ccaatcaacc tggttggaaa cgatccgaag ccgacgccgt tccagagaac      1500
     taccggatgt ggtgcgctac cgaagatgcc acccggtttt catccaccgc ccaggttgcc      1560
     atcgatgcca actgacgtgc ttccagtgcc caagaatcca gcagcaagtt cccgaccatt      1620
     tcaatgcgca accggttccc gtccggtgct ccagcggttc ccttgtgtgg ctggattccg      1680
     cacaattccc atcaagttcc cgagtgcgat cagattgtgt ctggtcgcaa agcgattccc      1740
     atgtaagacc agattccgtc cagcgattcc atcccggttg gtcggattcc atccaacgcc      1800
     gcagcgattc ccgtgtgtgg ccggaaccat tccggcattg aagcattcct ccaacttgac      1860
     cgaatccgat tcggtagtgg agcctttcca gcgtgtcaca agattccgtc aagcttcgaa      1920
     gcagctatcc cgtttcaccg gattccgtcg aacgccccag cgattcccgt gtgtggtcgg      1980
     atccattccg gcattgaagt attcctccag cctgaccgga tccaattcgg tagtggagcc      2040
     ttcccagcct gtgacaggtt tccatcaaat gtcgaagcat cccagctgtg tgaccgagtt      2100
     ttgtgtgatc tcggaccagt tcccgaatgt ggccggaatc cctccggtaa tgaagcagcc      2160
     gtccagtgtg atgggatacc agccggtgtc ccagagattc ccatctgcaa gcgtgttcca      2220
     tttggtggcc aagaagttcc agtgtgtggc cagaatccat ccgattcgtg agcagccatc      2280
     ttctgcgacc ggaccacgtt cggttctgaa acgattcccg cccagtgtcg aatcctatcc      2340
     ggcaccagag aagccccaag atgtgaccgg tatccctcct ccggttccga agcctccaga      2400
     tgtgaccggt attcctcctc cggttcccaa gccaccagat gtgactggta ttcctcctac      2460
     gaatcccaag tcgtttcggt tgccaatcga aatgtatcca atgctgatgt tcctgctgcc      2520
     gaccggtatc cttccggtat cgaagctagc cctgccgtct accgaaatgt ctgcaagatt      2580
     caagccgatt cggatgtcag ccggcatccc tccgatcagc aagccaatcc tgaagatgaa      2640
     tgagatatgt ccagtgtcaa ccggaagcca tccggtatcc aagtggatgc ggtgttcaac      2700
     cacgattcca ccgatagtga tgccaatcta gaagatagcc ggaatccatc cggtgagaga      2760
     gccaaccccg atgcccaccg gaaaacgtcc ggtattaagc gaagccccga atctgagatt      2820
     gacgaagaag atgatgccgc cggtcaaccc gactggtgat tccatgcaag cccataccaa      2880
     gtccaggccg gagaaaccac caaatgaagc ccccatgcga cgtcgagcca gcgaagccat      2940
     cccggagtgc gtgtcccgta cgcatccacc cgaagatgtt catcaagtgg taagcaagct      3000
     ttcgatttgt ggtgtgtgcc tattcccttt cctggctcaa agttgtttcc ccagtctacc      3060
     attgaagagt cccacccaaa acgatattgt tcttgatgag tttttcgtcc ttcctgtcgt      3120
     caatgagttt tcctaatcgc caatttccgt ctctccgagt aagctttgaa tccatatgag      3180
     ttttccaccg attgattccc ataatacagt ccaccatcga agatcccttc cttccttttt      3240
     cccttgttga gttgatttcc ctatcgttga tttccattgc ctacttgagt aatgtcgtaa      3300
     cgagtaggtt ttaaagcctt gtgaaatgtt tgcccattaa tccaaaactc cttgcttgat      3360
     atcctacttt atgattcgtg attccctctt atttgatcat gattgagtcc atgtgaattt      3420
     tcttcccatt gagtttttcg atcattgaaa tccttccctc ccaaatttga agtgatgttt      3480
     tgtgacaccg tgatcccgca gaagtgtaaa tatgttttcc ttaaaacatt ccatttgtga      3540
     ccgatgttga gctagtttct gaattgccac ctgaaggttg tgtccccctt agtttgccac      3600
     gattcctatc cagtgtttgt ttagcccttt tgccaagtca ttagttcgcc aatctttgaa      3660
     gttttgtgtg cccacatttt gaattatgcc agttatcctt aatacagtcc acaccgaatt      3720
     gaagatgaat ctctaacatt tagtgtagtg atctaatgcg cctgccatga attgccctta      3780
     tgttcctgta acgcctgtgc cttttgtgta atgaaattga aagttccttg cagtgcctga      3840
     agtagaattc ccttttctct caattatttc cccacccacc aagattgaac tattccagaa      3900
     gtgtgtaaag agtttgttct gcctaaagtg tgtcgctgat ataccttact gtttcctgaa      3960
     attagattct tgatatcctg tgagacaagc agttccctcc gcaaatcagt ccgtagttcc      4020
     ttccatccct ttgagattat ctgttaagcc gtagtaagtt aatgtttcca tcctaccaat      4080
     cctagagttg acttgctgag atcccctttt ccgagcatgt ttttcgtaat aagccagtct      4140
     tgaattcacc atccctttcc cttttcggcc agagtctata agtttttaag aaatggaagc      4200
     ctttgaaatg ttatctttcc accctgacag ttcttatgag tcgagtccct gagtttccca      4260
     tcaccgtgaa ttttgtagtc ataccaagtc ctccattgaa cccatccctt tacctctttt      4320
     ggccggggag ta                                                          4332
//
ID   BEL-939_AA-LTR repbase;    DNA;    INV; 688 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.08, Created)
DT   22-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-939_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-688
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-688
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4529-4529 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 688 BP; 190 A; 222 C; 119 G; 157 T; 0 other;
     tgttcgcgcc aacgcgaagt ttccgtttgt atgtgtgtcc ctcacacccc tgtccctact        60
     aatctcgagc cgccgcgagt atatcggcct ccaataccaa actaacaacc accccaaata       120
     acccacacac acacacacac acacacacac acacacacac acacacacac acataccacg       180
     tcgttagttt tgccttgctc cccatcctag cgtgtacctg tatgcagtca agccgaccaa       240
     ccacccagtt atgtataacg tgaacgagat agccagaaag aacgcactac caccacttca       300
     tccagcatcg agtttattgc agcatcaccc gagatacata ggagagtgga aatttccatt       360
     gcaaccccat cgctgcgcat ccaatgtttg aaactacctg taacctattt aagaaacttg       420
     cgtgcgcagc tcttgattca gtttctttcc aaccattata ttattaacat cgatagaaat       480
     acagtagtta agttaaagtg aaccataccg cctttccctc caccagtgga aaccgaacag       540
     ccttttccaa ggctagagtt gttaagtccc ccctccagtc gagctatcgg tcctgtgccc       600
     tgttgctccc ggcaacaggt ggacggagga tcatccgatc tttccgttcc cgctcacccg       660
     agcaaagtcc cagttgcacg ccgcaaca                                          688
//
ID   BEL-93_AA-I repbase;    DNA;    INV; 6436 BP.
XX
AC   supercont1.273;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-93_AA_;
KW   BEL-93_AA-LTR; BEL-93_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6436
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.273; Positions  126123  132558.
XX
CC   'ATGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           998..6310
FT                 /product="BEL-93_AA-I_1p"
FT                 /translation="MAEREVLIGRRDTLLAALGRAEAFIENFDAGRDQGQV
FT                 PLRLSHVDNIWANLETVQGQLEDTERTVEGRALHADIRAGYETQLFSIKAD
FT                 LLSKMPPTSINARNPCSAQANSALSGIKLPTISLPEFDGDYQHWLTFHDTF
FT                 VALIHSNADLPDIQKFHYLRAAVKGEAAQSIESIAISSANYSLAWDALKSR
FT                 YSNEYLMKKRHLQALFDVQRMKRESAATLQSLVDEFERHVKILRQLGEPTD
FT                 SWSSVLEHLLCTRLHDDTLKAWEDHASTVKDPNYTCLIEFLQRRIRVLESI
FT                 SVNHHVPSGSTQPTASSSKKQQPIIRLSSYSSTASTAKRCPACNQPHPLAR
FT                 CFKFQRLPLSERQQIVNAKRLCTNCLKVDHSNRNCPSEMNCRHCNRRHHSL
FT                 LHSAAPDASRRSSSDSATVNSPTSATPVVQSFSPVAQRSEQSLVTATDIVP
FT                 AVQTSVPIHHSRDNVFLLTVIVNIVDAFGQEHPARALLDSASQPNLITERL
FT                 ASVLRLRRSNVNITVQGAGKLSKPVRQSVYTEIRSLNQQFSCGVNFLVMDK
FT                 VTADLPSQHISTAGWNIPKELVLADPSFNKSQPIDMVLGAKHFYSFFPSAA
FT                 RLQLAVNLPVLVDSVFGWIVAGSSTQARPDPTSDKATSNSVTISMVSLEES
FT                 IERFWKSEELILNDGYSVEERHCETIYQSTVERNEEGRYVVRMPRQPDFDL
FT                 KLGASKSNALRRFELLEKRLDRNLKLKEDYHAFMQEYLDLGHMRLVGVDEA
FT                 EPPVAYYLPHHPVFKDSSTTTKVRVVFDASAKTSTGYSLNEALSVGPVVQD
FT                 DLLDIMLRFRTFKVAVVGDIAKMYRQVLLHPDDRSLVRIFFRFSQSSPVQI
FT                 YELLTVTYGLAPSSYLATRTLQQLADDEGHAYPLGGPALRKSFYVDDFIGG
FT                 AQSVEEAIRLRTEMSELLTKGGFELRKWTSNELEVLKGLKDDQIGTQSSLE
FT                 FSPNETVKALGICWEPESDTLRFDSNIHLDIEPPTKRSILSAISRLFDPLG
FT                 LIAPVVVKSKILMQELWLLSCGWDDPVSAQVQQKWENIQHDLPNISSYRVN
FT                 RYALLPNSAVQLHIFSDASESAYGACIYARCEDMKGQVRICLLASKSRVAP
FT                 LKRVSLPRLELCAAVLGAHLYDRIKKAISIEVFATFFWTDSAITLQWIRSP
FT                 PNTWKTYVANRVSEIQHFTHGCAWNHVSGSENPADLVSRGMTASDFIESKL
FT                 WSSGPDWLTHQENEWPTSLPPNAPEADLEVRTISAAVTATSSINSLFLRWS
FT                 SYTRLLHVVAYCQRFISNCRVKARTQSNELQAKIVSLHPRQLAEAKAILTR
FT                 LAQSDSFPAEIKAIQEGQVVGKRSPLRRLSPFIDSERVVRVGGRLSLSQLP
FT                 YQTKHPALLPKSHPFTRLVAEHYHKKLLHGGGRALLTAMREEFWPIDGRRL
FT                 VRSVVRACFRCCRLNPVPVQQQIGQLPASRVTPSRPFSIVGVDYAGPFYLK
FT                 AIHKRASPTKAYLCLFVCFATKAVHLELVSELSTSAFLATLRRFISRRGRP
FT                 SDIHSDNGKNFEGAKNDIAELFALLSNNHAEIVSSCGTEGITWHLTPPKAP
FT                 HFGGLWESAIKVAKKHLYRQIGSSRLSYEDMSTVLAQIEAVMNSRPLLPSS
FT                 EDPNDLAALTPGHFLIGTSLLALPDPDLRSIPTSQLDHYWKLQAHIARFWQ
FT                 HWQTEYIQELQKDTRSYMRNDNFLLGQLVIVVDEQQPTIRWPLARIVAVHP
FT                 GADNITRVVSLRTVKGVIKRPIAKVCLLPCASSVPVDVTVSNDDLQVPAIA
FT                 "
XX
SQ   Sequence 6436 BP; 1529 A; 1682 C; 1516 G; 1709 T; 0 other;
     taaaattggt gccgtgacca ggatctcggt cgaagaacgt tccagaaagc tcctgcgcgt        60
     cccgccattg cactatctgg aacaatcacc gctgtggtcg cgccattata gtcgccatcc       120
     ctggggcaga ttaggagtcg ctgtgcgagg tttctgctga ttgaatataa ttcaaggctc       180
     gatttatcgg gcgcaaggta attgcctgtc cgattttctt cgtgggtttc gcaggtgccc       240
     tttagatcgt tgtttctttc attgcatgca ctgttcatcc ttcctcgttt ttcggagaca       300
     tcggcctcta cgagtggact acgccgcccg gacaaattgc gccattgctg ccggtgatcc       360
     tgcgacactt ttcgccatca cagtccagtt cttcggcgcc atatcttctg gaaagtgacg       420
     ccaagccagc ccattgtgat accttctgta ttgataagct tctagaactg gtgattgttt       480
     cgtcactggc cattgtggcg acaatacgac tgcttctttc gacgattgtt cctgctgcta       540
     cgccatccta cttgcacctg ctcgttcagt gaggcctctg aaggcattat tctggatttt       600
     ttctggatat ttgcgacgcc gtgtcgaatt aaacaggaat ttgtggattt ttgctacact       660
     ttgtcatcgc tcgtgccgct ttgggaacgt tttcgacacc gtggaccaac ggttacccat       720
     caacggcatt ttcgtcgatt ttgagtgttt gctgctgaaa tatcgacgtc ctgcaacctt       780
     ttcggcgatt tggatcacga attgcacgga cggtgctcga atttggtcca gcctacggta       840
     ttttgaagat tcaaggcacg ttttgccttg gaataggtga gtacctttcc aagtggcttt       900
     attttctatc gtccggtcta ccgtggtttc ttttttggaa tagttttctg gaagtttctg       960
     gattcgacga ccacgtcctg accaacgagt gccaaatatg gcggaacgag aagtgctcat      1020
     cggcaggaga gatacgctgc ttgctgcatt gggtcgggca gaggcattca tcgaaaactt      1080
     cgacgctgga agggatcaag gccaggtacc gctaaggttg agccacgtgg acaacatctg      1140
     ggccaacttg gaaacggtgc agggtcagct tgaggacact gagaggacgg tagaaggtag      1200
     ggcattgcat gctgatatcc gtgctggtta tgagacccag cttttttcaa taaaagcaga      1260
     cttactttct aaaatgcctc ccacttcaat taacgctcgc aatccttgtt ccgctcaagc      1320
     taactctgct ctctctggga tcaaacttcc gactatttca cttccggaat ttgatggcga      1380
     ctaccagcat tggctcacct tccacgatac ctttgtcgcg ttgattcatt caaacgccga      1440
     tcttcccgac attcaaaaat tccactactt gagagcagct gtcaaggggg aagctgctca      1500
     atccattgag tcgattgcta tcagttccgc taactatagt ttggcttggg atgcgctcaa      1560
     gagtcgttac tccaatgagt accttatgaa gaaacgccat ctccaggcgc tcttcgacgt      1620
     tcaacgtatg aaaagggagt ctgctgctac ccttcaaagt ttggttgacg agtttgaacg      1680
     acacgtaaaa atcctacggc aactgggaga acctaccgat tcgtggagca gcgttctcga      1740
     gcatcttctt tgtacgagac tacatgatga cacgcttaag gcatgggagg accatgcgtc      1800
     gacggtgaag gatccgaact acacctgcct cattgagttc cttcaacgga gaattcgggt      1860
     tttggagtcc atttcagtga atcaccatgt gccatcggga tccactcagc ctactgcgtc      1920
     gtcatcgaag aagcaacagc cgatcattcg tctttcgtcg tactcgtcca ctgctagcac      1980
     agcgaaacga tgtcctgctt gcaatcaacc gcatccgttg gccagatgtt tcaaattcca      2040
     acgtcttccg ctttctgaac gccaacagat tgtcaacgcg aagcgtctgt gcactaattg      2100
     cttgaaagtc gatcattcca atcgcaactg tccatcggaa atgaattgta ggcattgtaa      2160
     tcggcgtcat catagtcttc ttcactccgc tgccccagat gccagccgca ggtcctcaag      2220
     tgatagcgca actgtaaatt ctccgacatc agcgacgcca gtggttcaaa gtttttcgcc      2280
     agtagctcaa aggtccgaac agtccttggt gaccgctaca gatatcgtcc cagcggttca      2340
     aactagcgtt cctattcacc actcaaggga taatgtgttt ctactcaccg tcattgtgaa      2400
     cattgtcgat gcctttggcc aggaacatcc agcgcgagcg cttttggaca gcgcgtctca      2460
     gccgaaccta ataaccgagc gactcgctag tgttcttcgt ctgaggcgta gtaacgtcaa      2520
     tataacggtc caaggagcag gtaaactatc caaaccagtg cggcagtcgg tctacaccga      2580
     gattcggtcc ctgaatcagc agttttcatg cggcgtcaac tttctggtga tggacaaggt      2640
     tacagcggat ttaccgtcgc aacatatttc tacggcaggg tggaatattc cgaaagagct      2700
     tgttttggcc gatccgtcgt tcaacaaatc gcagccaatt gacatggtac tcggagcgaa      2760
     gcatttttat tctttcttcc ccagtgctgc tcgcttgcag ttggccgtca atctcccagt      2820
     gctcgtagac agtgtcttcg gttggatagt agctggttct tctacgcaag cccgtccaga      2880
     tcctacttcg gacaaagcca cgtctaattc tgtgaccatt tcgatggtgt cccttgaaga      2940
     gagcatcgag cgtttctgga aatcagaaga attgatcctc aacgatggct actcggtgga      3000
     agagcggcac tgcgaaacaa tatatcagtc cacggtcgag cgcaatgaag aaggtcgcta      3060
     tgtagttcgc atgcctcgtc aacctgattt cgatctcaag cttggagcat cgaagtcgaa      3120
     cgcccttcgg cgttttgagc tcttggagaa gcggctcgat agaaacttga agctcaagga      3180
     agattaccac gcattcatgc aggagtattt ggaccttggt cacatgcgcc tcgttggagt      3240
     agacgaagca gagcctcctg tggcttacta ccttccacac catcctgtat tcaaggattc      3300
     gagtacgacc accaaggttc gagtcgtctt tgatgcttca gcaaaaactt ccacaggcta      3360
     ctccctgaac gaagcacttt ccgtgggccc ggtggttcag gacgatctat tagacatcat      3420
     gcttcgtttt cgaaccttca aggtggccgt ggttggcgat attgccaaaa tgtacaggca      3480
     agttctactg catcccgacg acagatcgct ggttcgcata ttctttcgtt tttctcaaag      3540
     ctcccctgtg caaatttacg aactgctcac tgtaacatat ggtttggcac cgtcatctta      3600
     tctcgcaaca cgtaccctac agcagttggc agatgatgaa ggccacgcgt accctctcgg      3660
     tggcccagcg ttgcgaaaga gcttttacgt cgacgatttt atcggaggag cacaatcagt      3720
     tgaagaggcc attcgtttgc gaacggagat gagtgaactg ctgaccaagg gtggattcga      3780
     attacgaaaa tggacttcga atgagctcga agtactcaag ggtttgaagg atgatcaaat      3840
     cggcacgcag tcgtcattag agttcagccc caatgaaacc gtgaaagctc tagggatatg      3900
     ctgggaacct gagagcgaca ctttgcgttt cgactccaac atccatttgg acattgaacc      3960
     tcccacaaag cgttccattc tttctgctat ttcgcgacta tttgacccac ttggcctcat      4020
     cgcaccggtc gtcgtcaaat ccaagatttt gatgcaggaa ctctggctat tatcttgtgg      4080
     atgggacgat cccgtttcag cacaagtcca gcaaaagtgg gagaatattc agcacgatct      4140
     tccgaatatt tcatcgtacc gtgtcaaccg ctacgctctt ttaccaaatt ccgctgtgca      4200
     attgcacatt ttctccgacg cctcggagtc tgcgtacggt gcatgcatct acgcccgctg      4260
     tgaggacatg aaaggacaag ttcggatttg cctgctagca tctaagtccc gagtagcacc      4320
     tctcaaacga gtgagccttc cacgactgga actctgcgcc gctgtactag gtgctcatct      4380
     ttatgatcgg atcaagaaag ccatcagcat cgaggttttc gccacgtttt tctggacgga      4440
     ttcagctatt acgttgcagt ggattcggtc acctccaaat acatggaaga cctacgttgc      4500
     aaatcgagtt tccgaaatcc aacacttcac tcatggctgt gcttggaacc acgtcagtgg      4560
     cagcgaaaac cccgcggacc tggtgtctcg cggaatgact gcatcggact tcattgaaag      4620
     caaactttgg agtagtggac ccgattggtt aacacaccag gaaaatgaat ggccgacatc      4680
     tttacctcca aatgcacccg aagcggatct cgaggttcga acgatttctg cggcagtaac      4740
     cgcaacatca tcaatcaatt cgttgtttct ccgatggtcc tcctacactc gccttcttca      4800
     cgttgtcgcc tattgccaac ggttcatcag taattgtcgt gtcaaagctc gcactcaatc      4860
     aaacgaactc caagctaaaa tcgttagtct tcatccccga caattagcgg aagcaaaggc      4920
     gatcctcact cgcctagcgc aaagcgactc tttccccgcc gagatcaaag ccatacaaga      4980
     aggccaagta gttggaaagc gttctcccct tcgaaggttg agccccttca tcgactcaga      5040
     gcgagtagta agagtgggag gccgtctaag tctgtctcaa ttgccctacc aaactaaaca      5100
     tcctgccctt cttcccaaat cgcatccttt cacgcgccta gtagctgagc attatcacaa      5160
     aaagctgctc cacggcggcg ggcgcgcttt actaacagct atgcgtgaag aattttggcc      5220
     aatagatgga cgcagattgg ttcgaagcgt tgtgcgtgca tgcttccgat gttgtcgtct      5280
     taaccctgtg cccgttcaac aacaaattgg tcaattacct gcgtcccgag tgacgcccag      5340
     tcgtccattc agtatagtgg gagttgatta tgccggaccg ttttacctta aggctatcca      5400
     taagcgtgct tctcccacca aagcgtattt atgcctcttc gtatgtttcg ctacgaaggc      5460
     ggtgcattta gagctcgtca gtgaactgtc cacatccgct ttcttggcta cgcttcgcag      5520
     atttatctcc cgccgtggcc gcccgtcgga cattcattcg gacaacggca aaaatttcga      5580
     gggggctaaa aatgacatcg ccgaattgtt tgccttgctt tccaacaacc atgccgaaat      5640
     cgtgtcgtcc tgtggcactg aaggtataac atggcacctt acaccgccaa aagcccctca      5700
     cttcggcgga ttatgggaat cggccatcaa agtagcgaag aaacatttgt accggcagat      5760
     cggctcgtcg cgcctttcct atgaggatat gagcaccgtc ctggcacaaa tcgaggccgt      5820
     aatgaattct cgcccactgc ttccatcgag cgaggatccc aacgatttag ctgccttgac      5880
     tccagggcac ttccttattg gtacatcgct tctcgccctg cccgaccccg acctacgcag      5940
     cattccgacc agccagttag accactactg gaagcttcaa gcgcacatcg cgaggttttg      6000
     gcaacattgg caaacggaat acatccagga actccaaaag gataccagga gttacatgag      6060
     gaacgacaac tttctgctgg gacagctcgt catcgtcgtc gacgagcaac agccaacaat      6120
     ccgttggcct ttggctcgta tcgttgcagt tcatcctgga gctgacaata tcactcgagt      6180
     tgtatctctg cgaaccgtca agggagtaat caaacgacca attgccaaag tttgcctgct      6240
     tccgtgtgct tcatcggtgc ctgttgacgt cactgtatcc aatgatgatc tccaagttcc      6300
     tgctatagca taagcgatgc aatgaagata actatttctc ttacaattaa gaaaaagttt      6360
     gttagtagta taatttgatg tcgattagtt tgcttttgtt tgtttacatt ttgaatgtca      6420
     ttcaaggcgg cgggta                                                      6436
//
ID   BEL-93_AA-LTR repbase;    DNA;    INV; 549 BP.
XX
AC   supercont1.273;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-93_AA_;
KW   BEL-93_AA-I; BEL-93_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-549
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.273; Positions  125574  126122.
XX
SQ   Sequence 549 BP; 154 A; 115 C; 131 G; 149 T; 0 other;
     tgttcgatcg tagcagtatt gcttagaatt acaccgcggc tcccggtata accggtgtat        60
     aatgcgctac tttaagatta aaatttagat taaccggcag cactgtaccc gaacaccgcc       120
     gatctgaccg gctccatgta tattattccc actagccgac cactgagaga tcagctgtgt       180
     cggtccgtag aaagtgaaag ttcaagttcg aggtcagagt tgttttgact agcacgaaga       240
     gcaggtctac aagatagcat gtagtgagtt gtgtctctag aataaattgt gctctgtatc       300
     tgaagagtgt gctatttttt aataaacgga tgagtgtttt ctgcaaattt gtaactgcca       360
     aaagtactta cctgtgtcct atcgccgaaa ccgatgccat tcgaagacct gtggaagaga       420
     gaagaatact tacctgtgtg gtgccattcg atcgccaatc ctcgccgccc tgtgggtgaa       480
     aaatagaaat tcaacgagaa aacacaacgt aggggatttg ttcgcgggct tttatggtaa       540
     gaacgacca                                                               549
//
ID   BEL-93_CQ-I repbase;    DNA;    INV; 3249 BP.
XX
AC   AAWU01007335;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-93_CQ_;
KW   BEL-93_CQ-LTR; BEL-93_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3249
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 313-313 (2011).
XX
DR   GenBank; AAWU01007335; Positions   20150   23398.
XX
CC   'CACGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..3249
FT                 /product="BEL-93_CQ-I_1p"
FT                 /translation="MVSRMKETKCMFCKKADKHEHGWEECSKCGSWAHTKC
FT                 SGVDEKSEEEWICPKCVDSEFLLKVPGNKTKKSGAISDSGTVPGASSVAVP
FT                 TEEELAEEQRAEREAFVKQIELRKKRLAEKLAWSEQRMKEEAEMQALELKT
FT                 QREIEQKQLAHDQEMLQRQLSVEKEFLKKRSALKKQIDASKAKVEALKAEK
FT                 STEQKVTDWLKGGENSGTGGKPKPKPKPAVTPESSDHEDSGEDSDSVKSSK
FT                 SGVKNILKKGGGSFGNTTRITREQLAARKVVSHALPKFKGEPEVWPLFISC
FT                 FEHTTAACGFSNIENLTRLVEALHGEALENVRSSLVFPSAVPGIIQDLRNM
FT                 FGRPEKLLKALLEKVRQAPAPHADRLGTFINFGMVVKQLCDHLEAAGLHDH
FT                 LNNPMLVQELIEKLPPSYQMDWVRFKRGKKENPLRRFANFMKKIVDDASEV
FT                 ADFSPQNMSDHNKPERGKPQGRAFVHVHETEPKQVEAPRIERPSRPCWFCK
FT                 RADHFIRSCEDFKRMNVAERLKEVERLQLCGRCLNNHGSRPCNFRGRCTVP
FT                 NCVGDHHPLLHRAEETVQLQKAENSSRSVIFRMMPVTLQAGKRQYDTVAFL
FT                 DEGSSATLVDDAVAKQLKAEGVPEPLIVNWTGNINRIEDGSRKVELMLSAK
FT                 GSTEKFPLSTRTVGELLLPQQDVNYPEVVGKYTHLSGVPLEDLPSGVPTIL
FT                 IGLDNLHLFAPLESRIGQPCEPIAVRSKIGWTVYGTEKRKPRRSVHLNVHL
FT                 VVPVSSSQAPEKRKVPDGRKPSTVPVSEPKETQAREILEESTTTLGREPEK
FT                 NPALKEKNEPTNRQRNEDCTTKDEQPRAAASEHRSDHGAAPNTNGHETSKA
FT                 PTKMVREIVNNCVAQLTWVRTTWSVNPPLSSHLGDAGERLMRSVSEALMAL
FT                 DDGRRLMDEIPKTATDGAENARPLAYLLQQSGEAEAIFPNSFQRYASPNQP
FT                 GGALPSPHPTVALRDTYQRPKQLAGVTWKRRNDENLPRRTRFGKTISRETM
FT                 EGNERKCWIRGPVDESIVGKDERVSKAWVRTESGWGKRAVAKLAVSEMRVG
FT                 NPKPEADSQTGLRAGE"
XX
SQ   Sequence 3249 BP; 835 A; 788 C; 1069 G; 557 T; 0 other;
     aaatcaaaat tttttaaacc ggattcggaa atggtttccc gtatgaagga aacgaagtgc        60
     atgttctgca aaaaggcaga caagcatgag catggttggg aggagtgttc taagtgcggt       120
     tcgtgggctc atacaaagtg ctcgggcgtg gatgaaaagt cggaagaaga gtggatctgt       180
     ccgaagtgtg tcgactccga atttctgctg aaagttccgg ggaataagac gaagaagtca       240
     ggcgccatca gcgattcggg aaccgtccca ggcgctagtt ctgttgcagt tccaactgaa       300
     gaggagttgg ctgaggaaca gcgtgccgag cgggaggctt tcgtgaagca aattgagctg       360
     cgcaagaaac gcctggcgga aaagctggcc tggagcgagc agaggatgaa ggaggaggcg       420
     gagatgcagg cgcttgagtt gaaaactcag cgcgagatcg agcagaagca gctggcgcac       480
     gatcaggaga tgctgcagcg tcagctgtct gtagagaagg agtttttaaa gaaacggtca       540
     gctctgaaga agcagatcga tgctagcaag gccaaggtcg aagcgctgaa agccgagaag       600
     tccactgagc agaaagtgac cgactggttg aagggcggcg aaaactctgg aactggaggg       660
     aaaccgaagc caaagccgaa accggcagtc actccggaga gcagcgatca tgaggactct       720
     ggagaagata gcgattcggt gaagtcctca aaaagtggcg tcaagaacat actgaagaag       780
     ggtggcggat cgtttggcaa cactactcgc atcacgcgag agcagttggc cgcgcgaaag       840
     gtggtgtcgc atgccttgcc gaagttcaag ggcgaaccgg aagtctggcc gctgttcatc       900
     agttgcttcg agcacaccac ggcagcgtgt ggcttctcca acatcgaaaa tctcacacga       960
     ctcgtggagg cacttcatgg cgaggcgctg gagaacgtgc ggagcagcct agttttccca      1020
     agtgcggtgc cgggcatcat ccaagatctc cgaaacatgt tcgggagacc agagaagcta      1080
     ctaaaagcgt tgctggagaa ggtgaggcag gcgccggcac cgcatgccga tcgtttgggt      1140
     accttcatca acttcgggat ggtggtgaag cagttgtgcg accaccttga agctgcaggt      1200
     ctgcacgacc acctgaacaa tcccatgctg gtgcaggagc tgatcgagaa gttgccgcct      1260
     agctaccaga tggattgggt caggttcaag cggggcaaaa aggagaatcc actgcgaagg      1320
     tttgcgaatt tcatgaaaaa gatcgtggac gacgcttcgg aggtggcgga tttctcgcca      1380
     cagaatatga gcgaccacaa caagccagaa agaggaaagc cgcagggcag agcgttcgtt      1440
     catgtccatg aaacggagcc gaagcaggtc gaagcgccgc gcatcgagag acccagcagg      1500
     ccctgctggt tctgcaagcg ggcggatcac ttcatccgat cctgcgagga cttcaagcgg      1560
     atgaacgtcg cggaacggct gaaggaagtg gagagattgc aattgtgtgg ccggtgtctg      1620
     aacaatcacg gatctagacc gtgtaacttc aggggccggt gtacggtgcc gaactgcgtc      1680
     ggcgaccatc atcccctcct acaccgcgcg gaagagacgg tgcagctgca gaaagcggag      1740
     aactcgagtc gttcggtgat cttccgcatg atgccagtaa cactgcaggc cggaaagaga      1800
     cagtacgaca ctgtagcgtt cctggacgaa ggatcgtcgg cgacgctggt ggatgacgcc      1860
     gtggccaagc agttgaaggc agagggagtt ccagagccgt tgattgtcaa ttggaccgga      1920
     aacatcaacc ggattgagga cggatcgcgt aaggtggagt tgatgctgtc agccaaggga      1980
     tcgacagaga agtttccact gtcgacacga accgttggag agctgctttt gccgcagcag      2040
     gacgtgaact acccagaagt ggtaggaaag tacacgcatc tgtccggcgt gccgctggaa      2100
     gatcttccgt caggtgtacc gacgatcctg atcggattgg acaacctgca tctgttcgcg      2160
     ccattggagt cacgaatcgg ccagccttgt gagccgattg ccgtgcgatc gaagatcgga      2220
     tggacggttt acggaacgga gaagcgaaaa ccgcgcagaa gtgtccattt gaatgtgcac      2280
     ttggtggttc cagtgagcag cagtcaagcg cccgaaaagc ggaaggtgcc ggacggtaga      2340
     aagccgtcta cagttccggt tagcgagccc aaggagacgc aagcacgaga gattctggaa      2400
     gaatcgacga ccactctggg tcgagagccg gagaagaacc cggcactgaa ggagaaaaat      2460
     gagcccacga atcgccagcg gaacgaggac tgcacaacca aagatgagca gccgagagcg      2520
     gccgcgagcg aacatcgttc ggaccacggg gcagctccga ataccaacgg ccacgagacg      2580
     agcaaggctc caacgaagat ggtccgggaa atcgtcaaca actgcgtggc tcagctgacg      2640
     tgggtgcgga cgacgtggtc ggtcaatcct cccctgtcat ctcacttggg agatgctggg      2700
     gagcgactga tgcgatcggt cagtgaagcg ctcatggcgc tggacgatgg acggcggctc      2760
     atggacgaga tcccgaagac tgccaccgac ggagcggaga acgcacgtcc gcttgcgtac      2820
     ttgttgcagc agtcgggcga ggctgaagcg atttttccca actcttttca gcgatatgct      2880
     tcaccaaacc aaccgggcgg ggctcttccg tcgccgcatc cgacggtggc tctacgggac      2940
     acgtaccagc gtcccaaaca gctggccggc gtaacatgga aacgacggaa tgacgagaac      3000
     ctgccgaggc ggacgaggtt cgggaagacg atatcgcgag agaccatgga gggcaacgaa      3060
     cggaagtgct ggattcgggg ccccgtggac gaatcgatcg tgggcaagga cgagcgggtg      3120
     agcaaggcgt gggtgcgcac cgaaagcggc tggggcaaac gagcggtggc gaagctggca      3180
     gtgtcggaga tgcgagtagg taaccctaaa ccggaagcgg actcccagac cgggttacgg      3240
     gccggggaa                                                              3249
//
ID   BEL-93_CQ-LTR repbase;    DNA;    INV; 806 BP.
XX
AC   AAWU01007335;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-93_CQ_;
KW   BEL-93_CQ-I; BEL-93_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-806
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 314-314 (2011).
XX
DR   GenBank; AAWU01007335; Positions   19344   20149.
XX
SQ   Sequence 806 BP; 287 A; 157 C; 203 G; 159 T; 0 other;
     tgttccgaca acactgccac caggtcgaca taagtcacgg cggcacagac acggtcgcag        60
     caacgccgca aatcgtgtca acgcaacgcg ttgacaactg tcacgagaga gagataggga       120
     gaaagagtga gagagagcga ggagaaagag cgcaaaaagc gatgtaaaca aacaagcaca       180
     agtagtagga aaaaagtgaa aaacgtttac gagcagctag acgcgcgtga ataggggtta       240
     aaaggtgcgc ttttgtgcag tttcgcgagt ttggtgcatt ttgtgcgtgc aacgagaagg       300
     ttgacgatca cgtacaggta gaagctacga tcacgaacag gtaggcgagt aaaactgcat       360
     gcagacgaaa accagagact aaaatatgtc ctaaccctaa tagtacggtc gcaagcggtt       420
     gattagacgt tccgacggga cgtagaaggc cagttgacct cgaacagcac aagaacgaca       480
     cagtacagga cagaattgga ttccggcgga gtcagcaggg aatttcaatt gaacttgtaa       540
     gttacactga acaaaaagtg cacgatagat ttaaaacatt aaaatgatga atttcgatag       600
     gattgtggat aggacggtta caaggagcag gaaaggattt ctggaaagga tcaaactaaa       660
     aaatgtaagg aaacacacac acacacacac acatgtacat ttacaaacat actaaaaact       720
     gttcttaaat acattcaaca gtttgatctg ctgcgaagcg gctgattcac aaaatttcgt       780
     tggattattt ctacaccgtc cgaaca                                            806
//
ID   BEL-940_AA-I repbase;    DNA;    INV; 6227 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-940_;
KW   BEL-940_AA-I; BEL-940_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6227
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4520-4520 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 6227 BP; 1797 A; 1236 C; 1673 G; 1521 T; 0 other;
     ttggtccgta tcgaggcgga tgtgccgcgt taaattatag aaatggaatt tgatcggtcg        60
     tcgtgctagt gattttgatt cctgtctctg gaagaattca ggaaatcgaa aagccagcca       120
     aagcggctga gtttttttgt gaagtgttgt tagcaggcga tcgaaaaact gacgaaaggc       180
     tgccatgttg aatggctgga agtagttgcg cgttcgctgt gaatggagtc tttcgatgaa       240
     aacggtgctg aaaacttgaa ttcgatttga gaagattgaa gaattgcaaa tttccgttgc       300
     agtaaagaac gcagcggaga ttgaaattgt gttttgatga tccgagatca gtagtgctgc       360
     agttcggaag aagagaaaag tgaaaatcgg tctaattgat tgccatgtgg agtccagcga       420
     ctccatcttg aaagtgaatt gtagcagggt tctgttcgtt gaaacgaaaa attcgtcgct       480
     ggtgttattt ggcgactgaa gtgtgatccc aatttaaatt ggatgtgcca cgaaggcaga       540
     aaagaaattt cagctttttt gtgaaaagtg gtgaagatgc gatccgaggc aggttgctgc       600
     agctgctcgg tagaagatca gtgaaaagaa aaagaagaag catttccgaa gccagcaaat       660
     tttgcgactc cattttggat ggtgtagaaa ttgttttggt gaacagtgag gcaattcgat       720
     aatcggatga aaaggaaagt gccgattctg aagaagtgag cgaaaaaaga cggaatttaa       780
     tttgaatgaa gtgaagtgct atgcagctga ggtccggcaa gctgaaacgg attttatttt       840
     cgactcccgt tgcctctcca gctgcatctc ccgtgttcca cacaccgaga acctgtcttg       900
     gtggagcgac atcatttgtg agtgtacgag atcaacgaaa cgaacagcag gctcgccgtg       960
     agcaaaccaa aatggctgaa acgttggcct cgttggagca gtgtctctcc acaacacaag      1020
     gtaaggtgga acgaatcaga cgcgccatcc aaattgcgaa cggagatgcc ggtaagttca      1080
     atattcacgc tcttaaattg tacgttgaga ctgttacgaa tgcgttcagt gagtataatg      1140
     cgatcatgaa ccgagtcttc atagcggatc ctacaaaggg agaagaattc gaacaaaaat      1200
     taattgattt cgaagaagtg tatgagtttg tacggatctc gctggacgaa atgattgatc      1260
     agcttgaaca agaacaacga gcaatttctg attatcagag ccaacctggc ggcagtggtt      1320
     tggggactcc aatgcaagtt gtgccatccc ttttgctaca gcagactcca ttaccgacct      1380
     ttgacggtcg gtatgaaggt tggtacaagt tcaaagaccg gttcattgac atcgttgata      1440
     aatgcgtagg ggattctcct gctacaaagc ttcactactt agatgaggct ttggtaggca      1500
     aggcagcagg agcaatagat cagcaaacgt tgcaggacaa taactacgaa ggagcgtgga      1560
     ggattttaac gaaaaggttt gagaatctgc gtatggtcgt tcaagcacac atccgataac      1620
     tgctgaatct aaagcctatg accaagggta cccatgggga acttagggct ttgctagatg      1680
     tcgtggaaaa acggatcgaa tctcttgcat tccacaaact aaaaatgacg gatcagttgt      1740
     ccgagtccat agtagtgaat ttactgatct cgaaattgga tgccgatact aggaaggcat      1800
     gggaagctac cgtgaatggt aacctaccgg tctacaagga aacagtggat tttttgcgaa      1860
     agtattgcta catactagaa agatgcgaag attcttccca ttccggaaga tctagaccag      1920
     tggcgtccag ctttaagagt tgtacacctg cagcttcggt cagagcacat gcggctacag      1980
     cgcagcatgg aagatgtccg atttgtgaca acgatcattc aatcgaagcg tgtgacatgt      2040
     tcaagaagtt gagcgtgagc agtcgatatg caaaagctaa gcagtgtggg ctttgcttta      2100
     catgcctgaa aagaggacat cgaacaacca attgcaagat tgataccagc aagttgtgtg      2160
     aatgccagaa aaaacaccat cccttaatgc atactgatga gaaacccgaa aggacggaga      2220
     cggcaacggg taaagcgaag gtgaaatcgg tcgtcacgag ctcgtcggtc acgaaggatc      2280
     caccgaaggt catcgctcag agtgaggttc cagtgttgca gatttcggca gagaagcaag      2340
     tgttgttggc aacggcggtt gttgatgtca tcgcgactct ggtgcaaggg cgaattttgt      2400
     atctcagaga atgagcgact tgctatgcct acgtaaggaa agcgtggaca tcccaattgt      2460
     tgaagtcaac ggaactcgta catcagtgaa tttcagagtt catgccaccg tgaagtctag      2520
     gacatcgaac ttcgtacttc ccctagattt tctgatagtg cctcgagtaa caagcgcact      2580
     acctctcgta catttcgacg cttcgacttg gccgaatccg gagcagttgc cgctggcgga      2640
     tccaactttc ttctgctcaa gacatgtgga tatgcttatc ggagcaggtg ttttcttcaa      2700
     cctgatggga gcaggaaaaa ttcgaatgtc agatgaactt cctatactgc aggaaagtca      2760
     gctgggatgg ttagtggcag gatctattaa taccgaactc gctgttccca cggtcaacgt      2820
     ttaccaagct tcgatcaatg ataagaagga tgaacagttg aaaattgatt tggagcgttt      2880
     ttggatgatc gacgaacaaa taagcgagcc gttgagcgat gattgcgaaa agcatttccg      2940
     tgcatcgtat tccagaagag acgacggcag atacgtcgtg caacttcctt tcaggaaaga      3000
     cgctgaccaa ttgggagatt ccagagccca ggccgaaagg agattcaagg cgttagagga      3060
     caaactggag aagcaccccg atttgaaaaa gatgtattcg gattttgtga acgaatattt      3120
     agaactaggc catgccatgc cgcagaaacc gaatcaggcg atggatacta cttaccgcat      3180
     cattgcgtac tcaaaccaga aagctcaacg acgagattgc gggtagtatt tgatgtgtcc      3240
     gcgaagacga ccaatgattt gtcactaaat gacattttga tggacgctcc aacagttcag      3300
     aaacctcttt tcgatattat cctgcaatgg cggctccaca aattcgtctt ctccgcggac      3360
     attcagcgta tgtacaggca gattgtggta aatgaagcgc ataccaagtt ccaaagatgt      3420
     ttgtggcgcg atgacagaac gcagtcaatc aaggatttgg aactgtcgag agttacgtac      3480
     ggcattggac cagctggatt cctagcaact cggtgcttag tccagttggc tgacgacgaa      3540
     cgtgagggat acccggaagc gagtgctgtt ctgttgaaga cattctacgt cgatgacgcg      3600
     ctttcgggag caagcacatt agaagaagca aggcgactac gtgaggattt gcagctgttg      3660
     ctgaacaagg gcggtttcaa actgcataag tggtacgcca atgatccaca aatacttgat      3720
     ggcgtgcccg tcgaggatcg tgaaaagcaa ctcagttttg aagacagaaa tgtgaacggg      3780
     atcattaaaa cgctgggcct actatgggac ccggtgaccg ataatttctt gttccgagta      3840
     aagcccatga cgaatacagg agttccgact aagcgtgaag ttttatccga gattgcgcga      3900
     ttatttgatc ccctcggtgt tctggggccg attgtagtct tggccaaaat ggtattgcag      3960
     cagctttggc gcaagatgat agactgggat gatccgatcc cggacgaaga gcttgatatc      4020
     tggagtagac taagatcgga gttgtgcagc gtgaacgaca tggagatccc gaggcgtgtg      4080
     acaatagaca atccgacaac ctttgagctt catgggtttt cggacgcatc cacaaaggcg      4140
     tacggatgct gcgtgtatct gaaaactgta gctgctgatg gtatggtgga ggtgcgactt      4200
     ctgtgcggaa aatcaagagt ggctccgctt aaggagtctg aacgaaagga gagggatgga      4260
     gctgcgccag cggaaatgac cgtaccaaga ttggagcttt gtgctgcggt attgctggct      4320
     aggcagatga aaacagtgcg cgaaaccgta gatgtcgata tcaatcgagt agttctatgg      4380
     tcggactcaa aaatagcgat ttgttggttg aagaagatca aaccagaaca attggtattt      4440
     gtgaagaatc gggttacgga aatattgaag ttgaatccgg acactgagtg gaactatgtt      4500
     agcacgaagg aaaacccagc ggacctagta tcgcgtgggg tgcaaccgaa tgaactaatg      4560
     cgtagtgaac tgtggtggaa tgggccgaat ttccttcgta ctatgaatga tgagtggcct      4620
     caacaaggcg aagataatga aaagcagaat gcaaatgaag aaagtgttgt aactggtgca      4680
     gtcgtgacct catccaagat aaatcgtctc cacgaagtga ttttgtcgtg cagcagtttt      4740
     agaaggcttc agcgagtatt tgcttacgtg tgtcggttta tccataattg tcgggcgagg      4800
     aagcttggca accagaagag atccggaaat attggagtgt tggattggcg tgattcagtc      4860
     tattgtatgg tgcgcattgt ctaaggaagc gtgtaccatg atgagatcag caggattcaa      4920
     caagggaaac aagtgaaggg aaagctgaga aatgtcaacc caattttcaa cgaaaatgat      4980
     aggctgttga gagtcggtgg tcgtgtcata cattccgatt tgccgagaga tcagaaacat      5040
     ccgatgatca tacctgtacg acatcatttc acggatatcg tcatcgaagc acttcacaag      5100
     gaacagttac atgctggtca gaatggatta ctggcaaaaa tcagagaaca attttggccg      5160
     gtgaacgcca agcgcacagt caatcgagtg ttaagaagat gtgtaaggtg tttccgtgtt      5220
     aacccagaga tgtgcaacag tatatgggcg atcttcccag cgcacgtgta accatcgccc      5280
     aaccgtttga gaaaacaggt gtggattacg cagggccgtt catgattaaa caaggaaggt      5340
     caaaggcacc aattaaggca tacgtttgcc tttttgtgta tgtgcacgaa agccattcac      5400
     ctggaattgg tgagctctat gacaacagat ggtttccttg gagcattaca gcgctttgtc      5460
     gcacgacgcg gaaatgtgtc tgacatatac tccgataatg gctccaattt cattggtgct      5520
     agacgagagc tccaagaatt tctacatcta ttgaagtctc agatactgga cgaaaaggtg      5580
     acaagtttct gtcagcccag aggaacgaat tggcatttca tgcctccaag agctccccat      5640
     caagggggct tatgggaagc cggagttaag gcgatgaaga cacatctgta cagaacgttg      5700
     aaggaggcct atttgacata cgaggagatg gtaactttgt tggttcaaat tgaagccatt      5760
     ctcaactctc ggccattggt tgaacagagt aacgatccaa ctgacttcaa ggcgctcagc      5820
     ctgggcattt tttggtggga agagagttga cggccatcgc tgaaccgggc tacactgatc      5880
     tgaaacaatc gacactctcc agataccagc tgatacagca acggaagcag tcattctggc      5940
     gcagatggtc tgatgaatac attactggtt tgcagaaacg aggaaagtgg tacaagagtc      6000
     ctgatcttct acgcaatgga cttcttgtat tactaaagga agagaatctc ccaccgcaaa      6060
     cgtggaaact tgggagaatt gtagaagtac gacccggcaa ggatggaatc atacgcgtgg      6120
     tgtccataaa gacaagcagt ggtgtttacg tgcggccaac cacccagatc gcagtgctgc      6180
     caatacgtga tgaagatgag tagagccatt cggctccggg gggtgaa                    6227
//
ID   BEL-940_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-940_AA-I;
KW   BEL-940_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-233
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4530-4530 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 233 BP; 69 A; 36 C; 46 G; 82 T; 0 other;
     tgttactatt catattgatt tgcaattata attttcacag tgtaactttg gttgaatttt        60
     tttgaacgtg ttgcatagtt tttactgtgg ggcttgtaga cggatacgat tacctctggc       120
     aacactttgt cgcgaaaaat aaatcacttg taaaaacgat ttcgatcaat acagacgcgt       180
     tgaaaataca gtccgttgaa gtttttgatt tgatcgcgga atccgagaaa aca              233
//
ID   BEL-941_AA-I repbase;    DNA;    INV; 2605 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-941_;
KW   BEL-941_AA-I; BEL-941_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2605
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2605
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4521-4521 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 2605 BP; 732 A; 735 C; 611 G; 527 T; 0 other;
     tagtggtcct tcgagccgga tccagtgccg ccccaccgcc cttaggaaag gattacgcac        60
     caccgctacc cgacacgttt gcgtggcact ctagccagaa cgtgtaccgc ccgaggatag       120
     gagaagctac tactgctacc gccgccgcca ccgtttgtgg attatcgagc atccgttgcc       180
     cgaggaggac tctgcaccgc cgttccgacc cgacacgctg tcgttacccg caacgctgtg       240
     tgttccaact gaagatcgtc tactatgaca cccccgaaga ccagatcggc tgctaaggca       300
     gcagctgaag ccgcttccaa ctgggaagtc accgccgatg ctgagacact aaaggagctt       360
     tcgtcgctgt cccgccaacg tgaccaagtg agcctgaaac taacgagagt ggaaagggca       420
     cttgtcgccg ctcgcaacca ggttagtcct tcccagctga ggacattctt gaagaacatc       480
     gacgatgcct acagtgaatt cagcacagtg cacagcaaac tgatcgccat cattcccgac       540
     gaagcctttc gccaacaaga ggaggtttat gtgtcgtttg aagagcgata caactacgtc       600
     cgcacgacca tcgacgagct gatgctgaca accgagatga actccgtcag aactccagtg       660
     ccacagccac aagtaatcgt gcagcagcaa ccattgaagg ttccgatccc caccttcgat       720
     ggatcgtatg ccaactggcc caagtttaag gccatattcc aggacttgat ggcaaactct       780
     ggagactccg atgccatcaa gctgtatcac cttgataagg cgcttgttgg cgaagcggca       840
     ggggttctcg atgccaaagt gataagcgaa gggaactacc agcaagcatg ggccatcctc       900
     accgaacgat tcgagaacaa gaggatcatc gtagagacgc acattcgtgg cctattcaac       960
     atccaaaaca tggcttcagg atcctgtaag gagcttcgac ggcttcacga cgaatgtacc      1020
     cgccatgtcg aaagcctgaa atacctcgag caggagttct tgggtgtttc cgacctgttc      1080
     ctggtccaca ttctgacgtc cgcgatggat caaccaacga ggatggcatg ggaggccaca      1140
     cagaagaaag gtgagttgcc gacgtatgcg cagaccgtct catttcttca gaccagattc      1200
     caaatgctgg agaactgtga gatggtattc aacccagaca cagagcgctc acccaaccaa      1260
     tcagcaccga aggcttccaa aacgattgca tccgattcga ccctacgagc agaaccaaac      1320
     gaacctccca gaagaagtgt ttgcgacttt tgccaaggac ctcatcgcaa ctaccaatgc      1380
     agtacgcttg caaaactgcc gatagttaag aggatggaaa aggtatggac aactggtgcc      1440
     tgcttcaact gtcttcaaaa agggcacact tccagcgagt gctcttctcc aaaggtgtgc      1500
     cagaaatgcc agaagcggca tcatacacaa ctccacaacg acgaaccaac gcaaggcctg      1560
     agaaacaacg tgtccaatcc aacgatggaa acccgactag tcccgaacca gaacacggtg      1620
     tccaccagtc cagcagtgtc gagtgaagac tcaagaccat cgcttcaatg caactacgtc      1680
     gattcctcca aaaccgtgtt tctacaaacc gcagtcgtca atgttataga ccagcacggc      1740
     cgaccgctgc catgccgtgt tttgctagac agtggttcac aagtgaactt tatctcgacc      1800
     gatttagcga accgtctagg cgtagaaagg caacgtgtca gcatcccgat tcgaggtatt      1860
     agcaacgtcc gaaccaatac tcaggagaag gctatgatag aattccgatc ccgaataacc      1920
     gactaccgag ctagagtgga gtgtttagtt gcgcctaccg tgacaagcta cattccgtcg      1980
     acatcagttg atatttcaac atggagcttt ccagttggag tctgccttgc tgatccagaa      2040
     ttccataaac ccgccaaagt agatatgctc ttgggaatcg aattattctt cgaccttctg      2100
     cgaccaggaa acatcaaact agatgaggac taccccgaac tacgagagac tcgactagga      2160
     tgggttgtct ctggtgtgtt ccgagacaga tctatccttg aggaagctca acatgcattc      2220
     accgctgttg tagacagtcc caaccgatcg gatcaacgat attcgaaccc caaaagaatt      2280
     tcgactccat ccacacacgt taaaagagag cccaacttac atgtgatttc aacccgaaaa      2340
     ccgacaaaca tcgaccgacg acctctccga aacatcgcac ggaagaagag tgagtatcat      2400
     ccagccatag acaagccgtc acgaaccaat caaacccgag gaaatgagga ttttatgcgc      2460
     cgccatccaa gcctggtctt ttacccacga atgcgtcaca aaggtttcga cacccgaaca      2520
     accgattcag agattaccct tagaaaagca gcaccgttga gtactacaaa caagctgttg      2580
     aacttcgtgt caaccggggg gagta                                            2605
//
ID   BEL-941_AA-LTR repbase;    DNA;    INV; 584 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 26.08, Created)
DT   23-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-941_AA-I;
KW   BEL-941_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-584
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-584
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4531-4531 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 584 BP; 179 A; 136 C; 141 G; 128 T; 0 other;
     tgttccgtac ggaacgtgcg gaaactccta caaaaagaaa aacccaatgg agcacaaccc        60
     gcatcagtaa aagaaccaac aacaatcgga aacatagccg aaatgcagaa ctcacacagt       120
     ttaagccccc gatgagtccc accctaacga cgccgctgag agtgtgagtt acatccatga       180
     ctgtgagtgt catccgcgag tgccgttgag cgattcccgc cgtcatcatc gtcatcatca       240
     tggctctcac cactgcagca gcgtgcgcat cgcgaacatt ctggaacacg tgtcgcgttt       300
     gcgtgagaac gttctggaag tactcaagat gagtataaat acacggaggg aatcgcttgc       360
     gaatcagttt tatttcaacc gtcgcggaat ttatatcgta gtgaaaagtg aaagtgcaag       420
     tgaagtaaaa gtgaagtgaa gtaaagtaga ataagtgcag agtaaatata aagtagtgta       480
     gtatgtagta gtgtgaaaag tagtggtgta tttttctttc atccgccccg taatacagtc       540
     caccccgacc cgaccggagt tggccacggg ttaacgcgcc aaca                        584
//
ID   BEL-942_AA-I repbase;    DNA;    INV; 3991 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-942_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3991
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3991
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3991 BP; 1172 A; 902 C; 934 G; 983 T; 0 other;
     ttggtccttc gaaccggata atcggaagga tcccgcgaaa gccggaacgc cattacacat        60
     tcaccggaga aggaatttgt tctaacaagc cgaaaatcgc catcacaaaa ctaaacccaa       120
     gtgcactcac cgttcgcgaa gaggatttgg atccatcgag agatcagtag gatacaaaaa       180
     tccaattgga aactgctatc accactgcag catatcacca ttatgttgtg gtattttcac       240
     tgaaatatca ccgaaacggg ctggttgccc tggttagccc aggtaaatta actttgagca       300
     gtacatgtcc tgccgttgct ggaccacttt tcggtttcta caccactatt tttctcatcc       360
     acaatcatcc aaaaacgcaa ccgaactacg agtgatgatc aactaaaata ggctacttgt       420
     tttggtttgt ccaaagtcac caacaccacg tagagaggcc cattcaagct tcctacggta       480
     gtaatcatcg aaacgaccgt ctacaacgcc acatacttgg aaggaaacta ccatatcatt       540
     cgttggtaaa tgcgtcaaca aaacgaagag aatcgaatcc gacttcacca agaggaactg       600
     atcactgttt gaaaataccg cggtactgaa catccagaga aaacacccac ccgacgacaa       660
     cttctattcg atccacggca aattccttcc gtttgaaatg ttcacacacg actgtgcaat       720
     tgtatgattg ctctcgagaa cgtttaaaat aatgcgacgg caattaatca aggcgaccaa       780
     acaacaccga ggcaacaatt tacactgcgc aacgatcgac tggataacaa cgaccgacgg       840
     agacgaaaac gtacctacaa ctgtgtgcga ttgggatcga ctgggactat tggtgtcagc       900
     aggctgcttg tttttacagg tcagtgataa ttatagtaca tcaatgtata tgtcttgccg       960
     aagcgggaga agatagatag ctacatttgc cctttctctt gtgcacgtgg atgtggttca      1020
     tttcattcaa ctattttcgt ggagcataat cgaggggctc acagatgcgt ttaaatcgat      1080
     tgatgtttcc actattgcgg aaaaacagtt gtgtaccgtg atattccggc acactgttcc      1140
     ttggccaatt agaagcgcaa caactgcctt tccaggttag tttgaatggt atatgcctag      1200
     ccgaagttcg acaccacaga aactacataa atgtttctcc tttttcctgg tacttttgga      1260
     tcatttgagg aattcatcga cactgctttg caaattattc tcaacggttt tggatccgct      1320
     ggaagagcat acctgtagag agggtggaat ttcctgtttt ctcaggtaaa tataagaatt      1380
     gctctacagt gtatgtctag ccgaggctag gattgacaga ataatacatc cacgttttct      1440
     tgtgtccaaa actgttcgag caaccatcgc gaagatgcca tcaacgacat acgctgccag      1500
     gaagactcca gccatgcgaa cgctgaaaac tacgttgcgt tcactgctta acatgtttca      1560
     ggacatttgt gggtttgtgg acaggttgag tgaggtctca agtaccagcc aggtgacggt      1620
     tcggctggac aagttggatg aactgtggga gaagatcaac gatgtgatcc tggacatcga      1680
     gacgcatgaa gaggtaatcg aggatgacga gagctacacg gaaaagcgat cagagttcag      1740
     cagcaaatac tacgacgtga aatctttgtt gctggacaag gtgaaggaat tggaggattc      1800
     atgcggtcta aatcaatcca tccggaacct ggatacaaca caacaaccaa ccatagagca      1860
     cgtaggccta ccgcagatta ggttacagac cttcgatggc aatatcgatg agtggctgag      1920
     cttccgcgac ttatacacat cgctcatcca cttgaaggca gacttgccgg atgtggaaaa      1980
     attccactat cttaaaggat gcttgtcagg cgaggccaag gcactagtag acccgttggc      2040
     aattacgaaa gccaactacc aaatcgcttg ggacatccta atgaagcgat acaatgacag      2100
     caagcagttg aagcggcggc aggtccaagc gttgtttagt cttccgaaat tggccaacga      2160
     gtcggctacc gaattgcagt cgctgctaga gggatttgaa cgcactgtac agacgttgga      2220
     ccagctagtt gaacccggtg actataagga tttgttgcta ttgaatatcc tgtgtactcg      2280
     attggatcca gtaacgagga ggagctggga ggagttttcg tcaacaaagg agcacgatac      2340
     gatcaaggat ctgactgaat tcctgcagcg taaaaccaga gttctggagt cccttcatat      2400
     gaatccaccc aatggcaaac cagaggcctc tcaatcgata tctatcatcc gatcgagcta      2460
     caatcctact cagtcaacaa gcagacgctg tgtagcgtgc ttcgaagacc atcttcttta      2520
     tcagtgtcca gtcttccaac ggatgtccat agccgatcgt gacatggaag ctcgtaataa      2580
     cggtctctgt cgaaactgct tcaagcgcgg acatcgagcg attgaatgtc cttcccgata      2640
     cgtgtgtcga aattgcaagg gcaagcatca cactctgctt tgtttccgat catcctctat      2700
     taatggtaac aacgagtcgt caaccatacg agctcctgaa gtgggcagta gtatccaatc      2760
     gccaggtagg ccgaagattc cccatggaac gcctaccctg gtatcatcca acgtatccgg      2820
     tgtcaaaatg tctacagtgc ttcttgcgac agccgtcgta atggtagaag gtgataatgg      2880
     agtgaggatt ccggctagag tacttcttga ttctggatcg gaatgcaatt ttatggtgga      2940
     tcgattagct gaacagttga acgttcaacg acagcgtttg gatgtttcgg tgtacggcat      3000
     cggacaggcc aacaactcag tgaaggaaag ggtgaccgta actataaaat cccgtgtgta      3060
     cgagttctcc agaaggatgg agttcctgtt gcttccaaaa gtaactgcga acatacccac      3120
     aactaaagta gacatgaccg gatggcaatt tccggatggt gtacaattag ccgacccaag      3180
     ttttttcgaa tgcaaggcgg ttgatctggt actgggcatt caatgtttct tcgacctttt      3240
     cagccaagat gatccaattt cgttaggcga aggacttccc agcctcaaga aatcgatgtt      3300
     tggatggata gtgaccggat gtgtggaaag gccgcaaatc aataaccatg taaactgtag      3360
     tttagcggtt aactgttccc gatcgaaaag gaactttacc aaatcgaaat cacgtagttg      3420
     gacaaattac aaccgaatat cctgtatttc ccagaagagc aagttgaagc agtctgcgat      3480
     agtccagcag catacacagt tgatcaaaga tagcagacgt ttggtcaatt ccaatttttt      3540
     ggctgaaggc cggggaccaa agtcgacaac caaatctgca attgagcgtt tgagcaggca      3600
     gttccccaat aatggtcaac ccaggagcag caatggtgct gcatcccaat ttggatttga      3660
     aggagcccag ttagatccat attgaacggt ccaagactag tgtgggcaag gaaaaacaga      3720
     tggtcaaccc tgacaaacaa acagtaacgg aaaatccaag tagctggaat tcaagcttat      3780
     gttgaaccgg agactccaag atccgtgacc caagccaatt ccaagagaca atcgtagagg      3840
     aataaatcca aaaaagagga agtgtatcta gtaatggtct ggaagtagaa tccaagccaa      3900
     atgttatcag atagtcaacc cgtccatgtg tgcacgagag gtatcttttc ttttatttca      3960
     gaaatcccag ctatttcagg gcgggcgggg a                                     3991
//
ID   BEL-942_AA-LTR repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-942_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-471
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-471
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4532-4532 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 471 BP; 149 A; 104 C; 103 G; 115 T; 0 other;
     tgttcgggta tcagcgatcg ccaaccgcat tgaagatccc ctcggtgagc gattcatgtt        60
     tcattgatta tcaaaggaaa atgttacacc caagaccgag aacatcgagt gatttcgctc       120
     atccaaccga tagttagtgc agaatacgtc ggcataaggt tcagacggag ccgtgatacc       180
     aattttagta ccgaaacccc agtagatgta taattgttag ttagtgtaat aaatgtagtt       240
     ttgtgtgtta gaaataaagt gtttgtaatg tgcaatggac cttattaata aattgtgaag       300
     ctttaaatga tgtgttgagt ggataaaacc ccgagaaacc ctaccaagaa tcggtcagct       360
     gaccacccag tataatcgcc ggacgtccac ttcagccacc caaggaaccg ctatccaaag       420
     gccaccaaat acagtccact cggaaggaag gtaaggacca gctcccaaac a                471
//
ID   BEL-943_AA-I repbase;    DNA;    INV; 3446 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-943_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3446
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3446
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3446 BP; 973 A; 1009 C; 666 G; 798 T; 0 other;
     tatggtcctt cgagccggat agcgtcgaaa ctccgctagt ccggcagtcc tgcgcctgtg        60
     agataccgcc attgggaagc tgctggtgaa tcccagaaag ttccatcgcg aaaccgccat       120
     cttttggata aaccgttccg acgaagacgc actccttccg gaaccgtttc cggcccgtac       180
     gtccggccga tccgctgtac tactgctgaa ccaatacaag gcaaattaat tgcctctagg       240
     aggtaattgc aattccaata tcgctattgt ccgttttgtg tgggctacgc tggtctatac       300
     tttacagatc cacttcgtga cgtcatcatg tccactgaac gcaaaatcaa gtccctgaag       360
     gtgcggcaga ggagcataat tgcatcgctt aacctcatca gaatattcgt cgatggctac       420
     gatgaggaaa cccaggccga cgaggtaccc gtccggctgg aacatctatc gaaactgtgg       480
     tccgactaca acgaagtcca gaacgagctc gagatgctgg acgaaactgt tctagaaact       540
     cttctagacg agcggtcaaa gctggagacc gcctactatc gtatcaaggg gttccttctg       600
     gcccataaca aacacccact caacgagagt ctatcaccaa tcaaccatgc acccccacaa       660
     gtcttcccgt ctgcatcgca agtacgacta ccggacgtta aactcccggt cttcgacggc       720
     aagctggaaa attggctaaa tttccacgac ttgttcctat cgctggtgca ctcgtccacc       780
     actttgtcca acattcagaa gttttattac ctgcggtcat cgttggaaaa cgaagctcta       840
     caactcattc aatccatccc aatcagcgcc atcaactacc cggtggcatg gaatcttctg       900
     ttggaccact tccagaacac cgatcggctg aagcaaactt acgtggacgc acttttcgaa       960
     ttcaccagtc tcaaacgcga atcggctacc gagcttcaca gcttagccga aaagttcgaa      1020
     gcaaacgttc gaatcctcaa gcaactaggg gaacacacgg agcattggga catcctctta      1080
     attcgcatgc tcagtacgcg ccttgatccg acgactagga gagattggga agactacgct      1140
     gcttcgcaaa acgtcatcac cttcaaggac ctgacaaact tccttcaacg tcgtgtcacg      1200
     gtacttcagt cgatccagcc gtctaaaata atcgacactc agtcaatcaa tctcccgaaa      1260
     aaatccgtgc aacgatccgt atcgagcctc ggagcgaacc agctttaccc acggaagtgt      1320
     atcatctgtt cagaccacca tccactatac ctctgcgaag ctttctcgaa gttaaccatg      1380
     gagcaaaagg aagacgaggt taaccgccat cagctctgtc gcaactgcct gcggcaaggt      1440
     cactttgcga gagactgctc atcatcatcc acctgtagga aatgccgtgg acgacatcat      1500
     acccagctct gttcgaccga ttcgttctcc gcctcatcga aatctcaacc catcaagcta      1560
     caacaaccta acccgacggc aacttcttca acgaacaatc ttccatccac ttctgcatct      1620
     gcaatcaacg gaattgtgag ctgcgcatcc gccggcggct tacaaaagac aatcctcctt      1680
     gctactgcgg tcatcaacat catcgacgat gacggcacac aacatgctgc tcgcgcactc      1740
     ctagactctg ggagtgaatg ctgcttcata actgaacggt tgtcccagcg catcaaggct      1800
     cagcggaaaa aagttcacct ccccatcact ggcatcggtc aagcaaccac ccacgcacgg      1860
     cagaaattcc tcactcgcat tcgttctcga gttggcgagt actccaccaa cgtcgagttt      1920
     ctcgttctgc caaatgttac catcgaccta ccagccacgt ccgtcgatac ttcgacttgg      1980
     gacatgccac ccggcattca tctggccgac ccatcattcg cagacaccaa cccagtagac      2040
     gtcataatag gggcggaaat cttcttcgaa ctcttccggg tccctggcca aatccctctg      2100
     ggcgacaacc aaccattgct aataaattcc gtgttcggtt gggtagtatc tggcaaatca      2160
     acgacccgtc catcaacgcc catcgttgtc aacttcgcta ccatcaaagc acaccccacc      2220
     ggtagatcaa ctcaagcgaa tttagcctca actgacggaa aatcattcac tgtcccagtt      2280
     atcaataaaa atcattcgtc aatggcatca gtacgtcacc gtatgaatga agacaacgag      2340
     catccaacaa atcacgacgc cattcaaccc aaacaaggct catctatgat catcgctcct      2400
     cccgctagtg caacccattc atcacttcgt ggtaagcagc cctcaccaag tttggactat      2460
     tatctaccaa cagacagcga atggtttacc gaacgaattg tcaccaaagt ccagcatcat      2520
     gttcaccgaa gctacctcac gaaaatccgc accacaacag ctacaatctc gttcaggagt      2580
     caatactacc tgacaaatca cctttttgct gaacttcgct tgctgcctct acagtctgtc      2640
     gacaatcatc aatggactca caccaatcaa caatccattg atcattattc tgatcgtgga      2700
     ttcattccaa catctgctta tgccgaactg aacatcgtca tcgtatttgc caaagctcat      2760
     ttggcgcatc atcattgctc cctcatccag aacaatcatc cgatcatcga atatcgttca      2820
     cgcaaattcc acactccagc actcaacaaa tcgatttcat cctcgtacac gaatcaacac      2880
     aattggcttc ttcaggcaaa ctgttggacg caaaaaatga atcatcaatg ggatcgcttc      2940
     acaggggcca gaatccaatc aatcgatcaa tacttggggt ttcctggtga gggcgaacaa      3000
     caaaaccatc aacacttcgt tttctcactt ccaaagctgt acagaatcaa ccaattgcat      3060
     gatcaccaga gatcttcgct cacactactg gaattcttcg ctaatatttg gggcacaatc      3120
     atcaccagac cagaaactgc tacaacacaa atgatcgcca cagaattcct tctctaaacc      3180
     gggggaaaca cctaaaagta aaaaattcaa ggccttctat tatgaaggac acggtaagca      3240
     cctgtccaaa taaattattc gtctcaaaac ctgctaccgg atcttaattt tacagcattc      3300
     aattttcgtt gtaatgatca accaaaacaa atcgtccctg gagtatgcaa gtcatccgtc      3360
     accaaccagc tgtaatacaa ggagaatgaa agggaatatc gattgtcgaa gggtttgaca      3420
     gaaacgctgt ttctgagggg ccagta                                           3446
//
ID   BEL-943_AA-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-943_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-493
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-493
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4533-4533 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 493 BP; 143 A; 102 C; 104 G; 144 T; 0 other;
     tgttcgtgta tgctctgctt gacacgaaaa ggagaagttg cgcgccgcct atacgtcaac        60
     agcgcaatta gctttggaga tatccccagt tcgtcgacag cgataaaagc ccaaaagggg       120
     atttaagttt atcatggcgt tcaaccatct tccgggacac ccttctataa aaggagatcg       180
     agcatcgaat atcgctctct ttcttgccgc aaagctccat ctcggcgcca tcacgagaag       240
     tggatctgga tacacactga gaatttctta aagttatttt gaattacgtt gaaattaaat       300
     tgttagttaa attagtgtaa aataaattaa gttgaattag cgaagtgaaa taacgagaat       360
     tttaataaat gtttttgtgg ttaacgtcaa gtgaactaaa gtgaactctt gtgcctgaat       420
     caagctctac aatctcctgg gaattctacc tccggctgaa ctagttccgt tgctgctcgc       480
     tgtgctctcg aca                                                          493
//
ID   BEL-944_AA-I repbase;    DNA;    INV; 3259 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-944_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3259
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3259
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3259 BP; 950 A; 857 C; 599 G; 853 T; 0 other;
     tttggtcctt cgaaccggat agcggccgtc gaactccgac cgttccggaa ctgtgctgct        60
     ctgaaacgaa tcgccattgc tacgtggaac tagctcactt tggatccgcc atcatagtct       120
     gaggaagaat tacgtcacgg cgtgaactcc accataacgg ataatctata caaggcacac       180
     tctatgcctt tcaaaggtaa ttagcattcc ttctaccttc cacttgtctc gtgtgatctg       240
     cgcggtcttt caacttatgt ccttcatgct tatgtccttc aacctcacta agaccttcgt       300
     gaacgaatac gatgaacaac gagatgctct agaaatccct gtgcgacttg agcacctgtc       360
     tgagttgtgg gagaacttca gaaacgtgca atctgaactc gagagcatcg acgaagcttc       420
     tatcgacgag ctattaaagc aaagaatcga attcgaaact gcgtactacc ctgtaaaagg       480
     ctttctactg tccatgaata aatctcccgt gtcatacgtc aacccaggtt cttcttcgtc       540
     acactcgcaa ctccctgcac cgtcatcgca tgtacgtttg cctgacgtga aactacccgt       600
     cttcagtgga aaccttgacg actggctcaa cttccacgac ctttacgttt cgctggttca       660
     ttcgtctacc gagttatcca atatccagaa gttctactac cttcgttcgt ctctggctgg       720
     agaagctctc aatctggtgc aaacgataac gctaagtgca atcaactatc cggtggcctg       780
     gaatatgttg attcaacact accaaaatac tgcacgcctg aaacaatcct accttgatgc       840
     cctattcgaa tttggtagtc taaaacgcga gtctgcagct gaattacatt cacttgtgga       900
     aaaattcgaa gctaacgtta aggtactcaa gcaactagga gagagaaccg aacactggga       960
     ccttattctc atccgaatgc ttagcgtttg cttagattct aagacacgac gagattggga      1020
     ggagttttca tccacaaagg acgccgtttc gttcgatgat ctaactaagt tcatccagag      1080
     gagggtaacg gtgctacgaa ccatccaggg gattgctgat gtcactccag catcttcaca      1140
     aaaccttaag aaaacccagc gcccattcac ctgcaacagt gcaagtgcaa accaccaaca      1200
     gcgaaaatgc atcatttgct cagaacatca tccgttgtac atgtgtgaaa ccttctcaca      1260
     actctcacta gaggacaaag aattcgagat acaccgacac cagctctgcc ggaactgttt      1320
     acgaataggt cattacgcaa acgagtgttc gtcgccatct aattgccgtc gatgtcgcgg      1380
     ccgtcatcat agccaactat gttcaaaatc ttcagcatcg tcagaatcgc aatctgcttt      1440
     gccacaatca tcaagcgaca ttattttctc tccatccaac gaacgtacga tcacctcagc      1500
     ttcagcggct atccctgaaa ccgtcagttg tgcctcaaat gttccttccc ataaagcagt      1560
     cttactcgcc acagccgtta tcttcatcgt agacaacgtc ggcaccaaac atgtcgcacg      1620
     tgctcttctt gactcgggaa gcgaatgctc tttcatttcc gaacgtttca ctcaacgaat      1680
     caaagcgcag cgcaaaacaa ttcatctcgg cgaaactacc acacaagcga aaacgaagtt      1740
     gctagcccgc atatgctctc gagacggcaa gtactccact aatatcgatt ttgtcgtctt      1800
     gccgaaggtc actatcgatc tacctgtcac gtccttcgac atctcaacct ggaatttgcc      1860
     tccggatatt cagctcgccg atccatcatt ccacaacacc aaccaaatcg acatcgttat      1920
     cggagcagaa gtatttttcg accttttcag agtttcagga cgtatttctc taggcaacaa      1980
     tttacccact ctggtaaact cagtccttgg atggatagta tgcggaaaat tggaaaccat      2040
     ctcttctgtt cccgcagtcg tcaacttggc aatagctgta gcaagcccta ctgctacaat      2100
     tgacagcgat aaacatctca aaagtccaga aaaaacatcc tcttcaccta cgaagcaaga      2160
     gcaatattct acccaactgt ctaactgtaa aagaaattat gaaggtctat ctaattgcac      2220
     accttgcacc accaagtttc atccaaatct cgacttacaa ctattcgatg ttccaccatc      2280
     gaaagaaaat cgaaaattca ttcagaagaa ccaatgcgtc aagtatccca ttcaacaatc      2340
     ttgttatgaa ctaagtcgaa atctcatcag catgcgacca gatcaacttt taacacacgt      2400
     atcaccatca ttcagttata attcaactgt tcaaccgttg tcctcatttt ggttgccagt      2460
     ccttgatcga aaaacattcc ctggaaacca cttcttcgtt gagaacgtgt tcaactgcag      2520
     tcaatcagga atcaatcaaa aggaatttaa ttccaatttc atgcaacatc atcatcgaga      2580
     tctcggcaac ggaagcagta ataaacagct taggaatcat ctgccgctcc tgtttcatca      2640
     atgggatgaa ttcacagggg ccagagtgaa tacaagcaca cctccaattg acagctatat      2700
     cgagaactgg ttgaaactga tggataacca actaatcgtt aatcgagact ctgtcatcaa      2760
     tacacaaaca tcacatcgaa tgaatgagtc gaagaaggtc tcaaagtatt ggatgacttt      2820
     catgtccgaa tatcaactcc gttttcatcg ttcacctcca tatccaagca gcaaacaata      2880
     tgagcgtcga atggaatctc gttcatcatt caccaacaaa aattatcgtc ccgctcacaa      2940
     ataacatcag ccacattcag ccagctagtg atcttccatc cgccagcacc taaaataaat      3000
     tcaaggcatt actaattggt ggaacaggta agcacctgtc caataactct attttgtttg      3060
     ttatccgcta ccgggtctta ttttgcatgt aaacaatatc aaacgcatcg cttcactcaa      3120
     ccatcaacgt gctgattgga acgatcgatt tgacatccta attggcatcg tcatcatcat      3180
     tgtgtgtcac ttgcttgcat cgagagcgag agagaacatc attcgtcaga aatgtgattt      3240
     ctgaaggggc cagtaggta                                                   3259
//
ID   BEL-944_AA-LTR repbase;    DNA;    INV; 505 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-944_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-505
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-505
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4534-4534 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 505 BP; 170 A; 105 C; 91 G; 138 T; 1 other;
     tgttcgcaca tcatgcgaat gcatataacg tgtcgccatc tgggagtgag atcagagcaa        60
     cataccatgg agaaaccctg ttcatcgatc atggctcccg tcggaaagtg cgtaaatctt       120
     catccggtca acttcgaaac aatagaggaa ccatctataa aagaccgacc tctcatcaaa       180
     atctctctct ttcgtgtgcg acaactcgac atcgtcatct tcatcatcaa ctatcagcga       240
     accagcgaac aaaacagaag aagaaatcta ttggtgaatt aatttaaatt ttttwtgtgt       300
     tattttaata agttagtaaa tatagcttaa ttagtgaact ctataataaa agaactgtgg       360
     acttaccgtg aacttacctg tgaattacaa aaacctaagt agcctgaaag aaaataatta       420
     aactatatgc ccgtgtaccc gttgtgctat gtggtgaata tagaagtgag caccgattcg       480
     catttcaccc tgagttaaac gaaca                                             505
//
ID   BEL-945_AA-I repbase;    DNA;    INV; 5614 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-945_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5614
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5614
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(198..2336,2158..4302,4306..5583)
FT                 /product="BEL-945_AA-I_1p"
FT                 /translation="MSAKGKNKKKAQEPGQPGDVDLDSTLTVGSGSISEQL
FT                 NQQKQKEERRRIGEELRVLLLKKESAKMRLLRVQGALTAGPENAENKHFLH
FT                 LQQKLVETAYADYSYFQNQLYELCVPDEVRCEEEMNFINFEALYSQLFVKL
FT                 TTLLEAAVKKEAAPVTNHPGALPYVPPLKAPLPTFDGNYENWFAFKNMFTN
FT                 VMARYEQEAPAIKLYHLRNALVGSAAGVIDQDIINNNDYEAAWDTLRERYE
FT                 DKQVIIDKHIDAIFNLPVMNKDSAVGLRKIIDTCTKNVDGLKNLELPVDGL
FT                 GEMMLLNVLAKKMDIETRKAWELDKGNQELQDYDSTMDFLKERCRVYEKIS
FT                 RSSKPVAEAVKPVRASGKHDIKAQSLVTTTGKCSHCKSDHELWKCEQFKKA
FT                 SIADKYISLRKTGSCFNCLERGHVTSRCTSQHSCKVCNSRHHTYLHKDQTA
FT                 SESQQPKSNSAVNKEAPEPNAGSTVPTSSSTPDNIPGSVLCTNLKSEQDTL
FT                 LATAVVLVYGAGRKLVPCRAVLDSASHKHFITEEFASKLGLKRKRTDYKIC
FT                 GIGGNEMSIQFKVHGRLKSRVSEYESPCLELLVVKKITSDLPMTGFDAQQL
FT                 NFPTGLELADPTFNVPGPVDVLIGSGLFFKLLKHGQLDVGDHLPAVQETHL
FT                 GWLVSGVVPTSHTNVGRALCTLVTEEDVGKILQRFWQFDTYDETATTGFSS
FT                 EDDCVAHFKGTYKAEWYRPVTPTWAEHYVPWSPRRTSAKYCNDSGNLIRMT
FT                 KQQLQDFHLKTIAWPISRAPINDAGGRYVVRLPFNDLKSQLGDSRTMAEKR
FT                 FLAVERRLSRDPPLKAQYAAFIREYEELGHMEEIGPMADKDHAGEFYLPHH
FT                 CVLKPTSSTTKLRVVFDGSAESSSGVSVNQAMMVGPTVQTDLISILLQFRS
FT                 HRYAISADIPKMYRQVNVHDDDTSFQKILWRDTEDQPLKTFALQTVTYGLA
FT                 SSPFLATMALRQLAEDDGHNYPLAAEAVKKTFYIDDMLTGAETKEGTAELL
FT                 RQVLGLLSGGGFSAHKICSNSNEIMNMVPEHQREKISEIEDPDINVVMKTL
FT                 GIAWNPVSDSFTICIPTMNPEQNVTFTKRVILSEISRIFDPLGLVGPAVTA
FT                 AKLIMRELWLLDLRWDDPLPKAMVSLWLEFRSKLQHLNGFHIPRWLFAEHC
FT                 VETELHGFADASDLAYGACLYARSIMDDGSTAMKLVCSKSRILPKKEDKKK
FT                 MVTTPRAELQAALLLSRLTLKLLKALEVQFSRVVLWSDSQIVLCWIAKPPE
FT                 ALQVYVGNRVKEIQTATEGFEWRYIPSKSNPADLISRGVQPHLLKDQSIWW
FT                 NGPPVFDCPADWFPPPCAISDEDLPELKRTTLVSVTTGGRLKLFDNISRFS
FT                 IIQRAMAYVIRFTDFVRSGKTALTKGLLTADEMRRAMLLIVRLVQHECFST
FT                 EIQALSEEKDFKLPKCLNPFVDDNDGTLRVGGRIKKACIPYGSKHQFLLPS
FT                 KHPITTAIIRYLHKDNLHLGQRGLLGVVRQQFWPLRAKDAIRNVIHKCTLC
FT                 YCLRPKPATQLMGDLPAYRVQGAYPFATVGVDFAGPFTVKSSVSIKKPSMT
FT                 KGYVCVFICMATRSLHLEAVSNLSTDAFLGALQRFVSRRGIPDKIISDNAT
FT                 NFIGASGELERLATLFKSEMHQKKLNEFCTQRNIDWSFIPPRSPHFGGLWE
FT                 AGVKSVKHHLRPILAGHKLSFEELCTVLCQIEATLNSRPLTSSSDDPNDMT
FT                 AITPAHFLIGREFQAIAEPSYGNIKQGRLSRWQMLQGMREKFWQTWSVDYL
FT                 HELQRRQRDFKTTTFKIGALVLVADDNLHHLQWSLGRITELHPGEDGHPRV
FT                 VTLRTKNSIIKRAVKYICVLPIDTEEDKPDDF"
XX
SQ   Sequence 5614 BP; 1597 A; 1214 C; 1443 G; 1359 T; 1 other;
     tttttggtcc gtgacgagcc ggatgtagtg gacattcgcg aaaaacgaaa actgatcgcc        60
     gttcctagcg tggaatgagc caattcgata atttgacggt gatcgtaccg aattcgatcg       120
     acgccatttt gtatcggcgg tgcgcgactc cctagaacag agtcattcgt gtgagaacat       180
     tcgtatgtga aaacaacatg tctgcgaaag gcaaaaataa gaagaaagcg caggagcccg       240
     gtcagcccgg tgatgtagat cttgattcta ctctgaccgt gggaagtggt tcgataagtg       300
     aacagttaaa ccaacaaaaa cagaaagaag aacgaagaag aatcggtgaa gaactaagag       360
     tgttgttgct gaaaaaagaa tcggcgaaaa tgcgattgct tcgggtgcaa ggtgcgctca       420
     ctgcgggtcc ggagaatgcg gagaacaaac attttctaca cctgcagcag aagttagtgg       480
     agacagcata cgccgactac agctacttcc agaatcagct atacgagctt tgtgtccccg       540
     atgaagtgcg atgtgaagaa gaaatgaact tcattaattt cgaggcgctt tacagtcagc       600
     tattcgtgaa gcttacgacg ctgttggaag cggctgtcaa aaaagaagct gcaccagtta       660
     cgaaccatcc tggagctctg ccgtatgttc caccattgaa agcccctttg ccaactttcg       720
     atggcaacta cgagaactgg ttcgccttca agaacatgtt cacaaacgta atggccagat       780
     acgagcaaga agcgcctgcg attaagctct accacctgcg caacgctctg gtgggttctg       840
     cagccggagt tattgatcaa gatataatca ataacaacga ctatgaggct gcatgggata       900
     cgttgcgcga aaggtatgaa gacaaacagg taatcatcga taagcacatc gatgccattt       960
     tcaatctgcc agtcatgaac aaggatagtg cggtgggatt gcgcaagatc atcgacacat      1020
     gcactaagaa cgtcgacggt ttgaagaact tggagctacc agtcgatgga ttaggcgaga      1080
     tgatgctgct aaacgttttg gcgaagaaaa tggatatcga aacgcgcaaa gcatgggagc      1140
     tggataaggg aaaccaggaa ctgcaagatt acgactctac gatggatttt ctgaaggaaa      1200
     ggtgccgagt ttacgagaag ataagccgaa gcagcaagcc cgttgcggaa gccgtgaaac      1260
     cggttcgtgc ctcagggaaa cacgatataa aagcccagag tctggtgacg actacaggaa      1320
     agtgctcgca ctgtaaatcc gaccatgagc tgtggaagtg cgaacaattt aaaaaggcga      1380
     gtatcgctga taagtatatc tcgctaagaa aaaccgggtc gtgttttaac tgcctcgaaa      1440
     gaggccacgt tacgtcacgg tgtacgtccc aacattcgtg taaggtatgc aacagccgtc      1500
     atcacacata cttacacaag gatcaaacgg ctagcgagtc acaacaacca aaatccaaca      1560
     gtgctgttaa taaggaggct ccggaaccga atgccggttc aactgtaccg acctcgtcat      1620
     caaccccaga caatattcca ggatcggtgc tgtgtacgaa cttgaaaagt gaacaggata      1680
     cactactagc aactgcagtc gttctggttt acggagctgg aaggaagctg gttccatgta      1740
     gagcagtact ggattcagca tcacataagc acttcatcac cgaagaattt gcaagcaaac      1800
     tgggcctgaa aaggaagcga acggactaca aaatttgcgg tattggtgga aacgaaatgt      1860
     ccattcagtt caaggtacac ggccgactga agtccagggt aagcgagtat gaatcccctt      1920
     gtctcgaact gttagttgtg aagaagatta caagcgatct cccaatgact ggttttgacg      1980
     ctcagcagtt gaattttccg actggactcg agttagcaga tccaacgttt aacgtaccgg      2040
     gtccggtaga cgttttaatt ggctccggac ttttcttcaa gttattgaaa catgggcagt      2100
     tggatgtggg agatcaccta ccagctgtgc aggaaacaca tttgggctgg ctagtgagcg      2160
     gagtggtacc gaccagtcac accaacgtgg gccgagcact atgtaccttg gtcaccgagg      2220
     aggacgtcgg caaaatactg caacgattct ggcaatttga tacgtatgac gaaacagcaa      2280
     ctacaggatt ttcatctgaa gacgattgcg tggcccattt caagggcacc tataaatgat      2340
     gckggtggta gatacgttgt acgtttaccc ttcaacgacc tgaaatcgca gttaggagac      2400
     tcgcgaacaa tggctgaaaa acgtttcttg gcagttgaac ggagattgag tcgggatccg      2460
     ccgttgaagg cgcagtatgc tgcgtttatt cgagagtacg aggagctagg tcatatggag      2520
     gaaataggac cgatggctga taaagaccat gcaggagaat tctatttgcc gcatcattgt      2580
     gttttgaagc cgactagttc aacaactaaa ttgcgagtgg tattcgacgg ctcagctgag      2640
     tcatcgagtg gtgtttctgt taatcaagca atgatggttg gcccaacggt ccaaactgac      2700
     ctgatttcca tattgcttca atttcgatcc catcggtatg cgataagcgc cgacataccg      2760
     aaaatgtaca gacaagtgaa tgtacatgat gacgacacaa gttttcaaaa aattctctgg      2820
     agggacacag aggaccaacc tctgaaaacg ttcgctttgc aaacggtgac atacgggctt      2880
     gcttcgtcac ccttcttggc cacgatggca cttcgacagc tcgctgaaga tgatggtcac      2940
     aactatccgc tagcggcgga ggcggtgaag aaaacatttt acatcgacga tatgctcact      3000
     ggtgcggaga cgaaggaggg tactgctgag ctgctgcgac aagtgctggg attattgagc      3060
     ggtggtggat ttagtgcgca caaaatctgc tccaattcga acgagattat gaacatggtg      3120
     ccagaacatc aaagagagaa gataagtgaa attgaagatc cagacattaa tgtagtgatg      3180
     aaaacactgg gcattgcttg gaatcctgta agtgacagtt ttacgatttg tattccaaca      3240
     atgaacccag aacaaaacgt gacatttacg aagagagtga ttttgagtga aatatcccgt      3300
     attttcgatc ctctgggtct cgttggacca gcggttacag cggcgaagct cattatgcga      3360
     gagctttggc tgttggattt gcgctgggat gacccacttc cgaaggctat ggtctccttg      3420
     tggttggaat ttcgatcgaa gctgcaacat ctcaacggtt tccatattcc acgatggtta      3480
     ttcgccgagc actgtgtcga aacggaatta cacggatttg ccgacgcgtc ggatctggcg      3540
     tacggtgctt gtctatatgc gagatcgatc atggacgacg gcagtactgc aatgaaattg      3600
     gtatgtagca aatccaggat tttaccgaaa aaggaagata agaagaagat ggttacaact      3660
     ccgagggccg agctacaagc agctctgcta ctttctcgac tcactctcaa attgttgaag      3720
     gcattggagg tgcagttctc aagagtcgtt ctttggagcg attctcaaat cgtgttatgc      3780
     tggatcgcta agccccctga agctctgcaa gtttacgtcg gaaaccgtgt gaaggaaata      3840
     cagacagcta cggagggttt cgagtggcgt tatattccgt ccaagtcaaa tccagcagat      3900
     ttgatatcca ggggtgtgca accgcatctg cttaaggatc agagcatttg gtggaatggt      3960
     ccgcctgtct tcgattgtcc agccgattgg tttcctcctc cgtgtgccat atcagatgag      4020
     gacttaccag aactaaaacg aacaacgcta gtcagcgtga ctacaggtgg aaggttgaag      4080
     ctgtttgata atatcagtcg tttttcgatc attcagcggg ccatggccta cgtgattcga      4140
     ttcactgatt tcgttcggag cggtaaaacg gcgttgacaa agggattgtt aacagctgat      4200
     gagatgagaa gagctatgct gcttatcgtt cgactggtac agcatgaatg tttctcgact      4260
     gaaatacaag cgctgagcga ggaaaaggat ttcaagttac cgtgaaaatg tttgaacccg      4320
     tttgttgacg acaatgatgg aacattacga gttggcggta gaatcaagaa ggcatgcatc      4380
     ccgtatggta gcaagcacca gttcttgctg ccatccaagc atccaataac aactgcgatc      4440
     atacgatatc tccataagga taacttacat ctcggacaac gtgggctgct cggggttgtg      4500
     cgtcaacaat tttggcctct cagagcaaag gatgcaattc gaaatgtaat ccacaagtgc      4560
     acactttgct attgcttgcg tccgaaacct gcaacacaat tgatgggcga tttaccagcg      4620
     tatcgtgtcc aaggagcata cccctttgca actgtgggag tggattttgc tggacctttt      4680
     acagtgaagt catccgtgtc tatcaagaag ccatcaatga cgaaggggta tgtgtgtgtc      4740
     ttcatttgca tggccactcg ttccctacat ttggaagcag tatcgaattt atcaactgac      4800
     gccttcttgg gagctttgca gcgctttgtc agtcggcgag gaattccaga taaaataatt      4860
     tcggacaatg ctaccaactt cattggtgca agcggcgaat tggaacgatt ggcgacattg      4920
     ttcaagtcag aaatgcatca gaagaagcta aacgagtttt gcacgcagcg caacatcgac      4980
     tggtcgttca ttccgcctcg cagtcctcac ttcggaggac tgtgggaggc tggggtgaaa      5040
     tcagtaaaac accatttgcg acccattctt gctggacaca agctgtcgtt tgaagagctc      5100
     tgtacagttc tttgccagat tgaagcgaca ctgaattcaa ggcccttgac gtcttcctca      5160
     gatgacccga acgacatgac agcaattacc cctgcccatt ttttaattgg gcgtgaattt      5220
     caagcgatcg ccgaaccttc atatgggaac atcaaacaag gacgactatc tcgatggcaa      5280
     atgttgcaag gtatgaggga gaaattttgg caaacttggt ctgttgacta tctacatgaa      5340
     ctgcagcgac gacaacgtga cttcaagaca acaactttca agattggagc tctggtgtta      5400
     gttgcagatg acaatctgca tcatttgcag tggagcctcg gtcgtataac cgaactacat      5460
     ccaggtgaag acggccatcc aagggtggtc actttgcgaa cgaaaaattc catcatcaag      5520
     cgtgcggtga agtacatttg tgtgcttcca atagatacag aagaagacaa gccagatgac      5580
     ttttgaaatc caaggatttc aacggcggag gatg                                  5614
//
ID   BEL-945_AA-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.08, Created)
DT   25-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-945_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-177
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-177
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4535-4535 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 177 BP; 51 A; 36 C; 30 G; 60 T; 0 other;
     tgttttgtga attaaaattg catttcgttc agtgcataac acatttatgt cacacatacc        60
     actgaagtcc aaataaaatt agttattagt agagaagctc aagcggatgg ccgcgtttta       120
     ttttcctctt ccgtattgag ccgaatttcg aatacagtcc actttgattc cgctaca          177
//
ID   BEL-946_AA-I repbase;    DNA;    INV; 4063 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 26.08, Created)
DT   26-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-946_;
KW   BEL-946_AA-I; BEL-946_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4063
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4063
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4522-4522 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 4063 BP; 1109 A; 1122 C; 839 G; 977 T; 16 other;
     tattggtgcc gtgaccagga ttccggtttc cctttcgcca ttgtgtccgt gatccgagtg        60
     acgccaaccg ccatagtgag aagccgtcgc tattgaaatt ccgccatcgt aatcgatcaa       120
     attcccgcca tcctttcgaa gaagattcca gagtgttcca aagtggttcc taagattaat       180
     tcaaggcctg tttgaaccag gcacacggta cgtgtgattc cactgtgcgc agaaattgtc       240
     cgcgggtgcc ttgagatttt tttttccgat tttctttcca cgccaccgtc cgtacatcga       300
     aaagttccgc tagtgcttag cagtcccgtt gcccgtttcc gccctcgaaa gtgctatcga       360
     gtgccattag aacgttcccg aaagtttccg tcgccattcc cgctcatctg gccaccccag       420
     catcgtttga agcccgactg tatccggcgg cattttataa aatacaaggc ataatcctag       480
     ccttgaaaag gttagtagta ttccaaaaac ccctacgcca tttgtccggc tctaccgggt       540
     ctttctttgt gtgcatcccc atctagaacc gccattttgc cacaccgcct tcccatcatg       600
     gaggaacagc gcaaactcca gcttaccaac cgccgtacga ccctcatggc atcgctaggg       660
     agagctgagc agtttgtagc ccgataccaa cccgaacgtg accaagccca agtgccgcta       720
     cgcatcgaga atatcgacca cgtgtggatg ggactggaag aagttcaaac cgaacttgaa       780
     gaagtagaga ccaccgaaga aggtagggaa cagaacctcc aaatccgctc caaatttgag       840
     tccgtctatt tcaaagtaaa ggctgctcta aaatccctct tacccgccat tgtaacccca       900
     actcaaagcg caatccctaa tcctcccgcc aatctgctct ctggcatcaa gcttcccacc       960
     atttcgttgc cagaattcga tggcgattat aatcaatggt tgacctttca tgacaccttt      1020
     gttgccctca ttcatgcaaa cgctgatgtt cccgaagtgc aaaagtttca ttatctccgc      1080
     gctgccttga aaggagaagc ggcccaatta attgaatcga ttgccattag tgctgccaat      1140
     tattccgtcg cctggcaaac gctgacgaca cgctacgcaa acgactactt gcttaagaag      1200
     cgtcatttgc aagcccttct agattgccct cgcatgaaaa gagaatccgc cgaagctttg      1260
     catagtctgg ttgatgaata tcaacgccat acgaaaattc tccgtcaact gaatgagccc      1320
     gttgatcagt ggagtacgat gcttgagcat ctgctttgca ttcgccttga cgatggaacc      1380
     cttaaggcat gggaagatca cgccactacc gtcgctgatc cgaatttcaa ctgcctcgta      1440
     gattttctac aacgtaggat ccgtgttctt gaatcgatgt ccgtcaatca ccaatcgcac      1500
     aattcgcaaa cgcccgttta tcaaaccctc tccaatcgaa agccattgtt ccacaaagtt      1560
     gccacctaca ccgtcgctga agaccatcag cccaaatgct acgcctgcaa tcagcagcat      1620
     tttctcatta aatgtccccg ctttgaaagg atgagcgttt ctgaccgtat gagaatagtc      1680
     gataacaatc gactatgcca aaattgtttc cgccatgatc actttgctcg aaattgccaa      1740
     tccaaatatt cctgccgaca ctgccaaaga agacatcaca ccttgctgca cactgttaat      1800
     gaatcctctc accaatcatc accatcgcgc ttcaccaatc aaaccattca tgcacccgag      1860
     caatcatcaa atcgcttcta caatgctcca tccactacct acacatgcac gaccagcccc      1920
     aagcaagcaa acaatctcgc acctgcatcc aattcgaacg ttttgctttc taccgtcgtt      1980
     ctattgatca ccgattcaaa tggtcaagct caccacgcac gtgcattgct agacagcggc      2040
     tcacaatcca atctaatgag cgagcgattg tgccgtctat tgaaattaaa gcgacgagtt      2100
     gtaaacatcc ccgtccacgg tgttggtgaa tctgcttcga atgtgaagca cagcgtccat      2160
     tccctcattc gatctcgtaa aagcaagttc gaaatcgatc ttgacttttt agtccttccc      2220
     cgagtaacga tggacctgcc tgcagtgaca ttccccgcta gcaactggcg tatcccagat      2280
     gatttgctcc tagccgatcc aaatttcaat aaaactggag ctattgattt gcttcttggt      2340
     gtggaacatt tctacacctt cgttaactct ggcacgaaaa tcgagcaaga tcaacaacaa      2400
     ccaacgctag tagacagtgt ctttggttgg atcgttgtag gcaaacccca aactttaacc      2460
     attccacaag tcaccgcatg tcacgtgtcc atatcggagt cgcaaacgcg ccacgtcgca      2520
     cggattaaca gtgaagcttg tcagacaacg agaggaataa gtatggatga ttctaggagc      2580
     agtgacccgt ggcataacgg tccttccagg ccgcggctgc cagtagagaa taggccaatt      2640
     ttctccagag cgaacaacct gtccaacgaa atcttcgaga gacgagtcac ggtggcggcc      2700
     gtccaaacca ggccgactgt gaatgaaatt ttccagcgaa catcatccta cacacgactg      2760
     cttctagtaa ctgcttattg cctacgattc atcaacgcat gccggcgaca aaggtcatct      2820
     gatcaaccaa aaggaagcac cacactcatc gcagagcaat tatcacaatc tcggcaaaat      2880
     ttggtgaagc ttgaaatcga agaaattagg gatttaagta gagggaagcc agttaccaaa      2940
     atctccaatt tgcgcttatt gagtccagta cctcatcctg aatggataat tcgagttggc      3000
     ggtagactaa acctatcaga gcagcctttc ctcaccaagc acccaatcct aatccccagt      3060
     tcccatcctt ccacacgttc tgttgccacc gattaccacc tcaaactatt gcatggtggc      3120
     ggccgtgtca ctttgacagc gatgtggcga gaatactggc cgattcatgg gcgacgatca      3180
     atgaatggct tcattcacta ctgtttccta tgcacacgat caacacaaca aacgggtcaa      3240
     ctaccacagc gaagagcaac accaagcaga ccattcaccg gcactggcgt cgactacgct      3300
     ggtcttctgt acataaagcc accacgcaaa cgwgtaccca gcgagagatc ttcggtagat      3360
     attaccacca tctgcgcgac cgacggattc ctatggcata tgagatcacc gaaagcccct      3420
     gtcttcggaa ggcgatggga agcggctgta gagacgacga aaagatatct ccacgggcaa      3480
     cctgacaaca tcaccgtatc ctatgagaat atgaggaaca tcctaacacc gattgaggtc      3540
     tgcatgtact ccaggcttcc gatttccgac acgcatcttc tcgtcggcac ttcactcaga      3600
     gctgacgtca cagtagttcc attcaaacga ctcgaccatt gccagaagtg gatcccacaa      3660
     tttttgcatc tgtggcggac ggactacttg caagagttgc agaaggaagg cawacggact      3720
     actccaaacg ctgccttccg aacttggaaa catcggtaga cgaatttcta tcacctcaaa      3780
     gatggccgca agctaggatc atcgaggacc atccagaacg tgaccgattg atttaggctg      3840
     cgacactcaa amccagctag ggaactatcc agcgacttat caccaaagtt ttttattgcg      3900
     gccacacgaa gatttagaac ctaaaattga agaaattgtt agaatttwkg gcgattatta      3960
     gtagcgaatt tcckcatgcw mgcwgtccat magwtttgma gacaatgaaa twwttktgac      4020
     agtagaaamg tcagatgaaa ttagaaattt caggtggcgg cga                        4063
//
ID   BEL-946_AA-LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 26.08, Created)
DT   26-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-946_AA-I;
KW   BEL-946_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-452
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-452
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4536-4536 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 452 BP; 133 A; 92 C; 89 G; 138 T; 0 other;
     tgtttgttct caacaagttc tcaaaaatta tctatagatt tgcgccgaac ccatctgctc        60
     tagtactcca tttgagtgct aggcgatggt agtagtgtta taacatgagt agcatataat       120
     ttaatttatc agttgtggta gctagctaag tttcgttaga ataagattca agaaataaaa       180
     ttattccaaa tcgagctctt aaagaagtaa gaagttcaaa caagttgtaa tctcccaagt       240
     tatcctccga ataaagttaa gtggaaagtg ttagccgttt ctattcgagc agaagaaaga       300
     ctcctagtgg ctgttagcag cacttcagtg agattttata gtgcttttgc ctgtagtgcc       360
     gtttcccgcc aagcatagtg gctacttcac agcaagtggc cgtttttctc caccgttcca       420
     attccaacgg aaatcgcgaa cctgccccaa ca                                     452
//
ID   BEL-947_AA-I repbase;    DNA;    INV; 3865 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 26.08, Created)
DT   30-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-947_;
KW   BEL-947_AA-I; BEL-947_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3865
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3865
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4523-4523 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 3865 BP; 1047 A; 967 C; 881 G; 970 T; 0 other;
     ttttttggtc cgtgtcgaac cggataggaa aaccacaccc gtggtggacg atcaaccgat        60
     cggtccgttc cgagtccttt cctcgttgct cccggcaaca atttggtgga caatcagccg       120
     attggtccaa ttccgctcat ccgagcaccc ttccactgct gctcccggca acatttggtg       180
     gacgatcacc cgatcgtcgg aattcaagcc gtgatcaagc tcaaccttgt gccgagttat       240
     tagaaaaaat attcctcggc aattgtggag aaaggaaatc gtcgcgaaaa gtatccttcc       300
     aagtaagtgc gtgcccgtga agtcgtgtgt gaattcggtc cgtcgtttaa gtacagtatc       360
     gcggtcgaac aaaagtgaaa acgacacaac cgtgtccgtg aagaagtgag ttcctgaaag       420
     aaaaagtgaa gttcgaagaa gaatagtggt gataaagtgc aagaactgaa ccgcccatag       480
     tgcatcgcgt ttgagtgtga agaactccaa ttgctgcgtg tgagtgaact gtttcctgat       540
     gccaattgaa cacacgccag tgaaagtgag tgaaaaagtg aagatgcagg agttgaagac       600
     gatcatccac ctgcgtggcc aagcaaaggc gaaagtgaca cggatccgga aggcgattga       660
     agaagctggc gcccagtatg atgccgcgca gctgaaagtg ttttctcgaa atctggaaaa       720
     ccatttccag gagtatttga atctccatca tcaagtaatg tcagtgtgcc ctcccgaaca       780
     aatcgaagaa caggatcaag gttacttgaa ttttgaaact cactacattg aaacgtgtgt       840
     gctagtggaa cgagcgattc aagcaaaccg taatattccc gtgatgcaac cacaagtgcc       900
     aaccaacgag tgtccccgga ttgtagtcca gcagcagcca ttgaaggcac ccatcccttc       960
     attcgatggc aagcctgaaa actggcctcg ctttaaggct atgtttttgg atgtgatgca      1020
     acattccacc gactcggatt gcatcaaact ttaccacctc gagcgttccc tagtaggagc      1080
     agctgctggc attatcgacg cccgcactct caacgacaac aactacaccc acgcttggga      1140
     aatacttgag gaccgtttcg agaacaagcg tgtaatcgtg gatactcaca tccaaggatt      1200
     gctcaatctg ccgaaaatga gtcgtgaaaa tccaaaggac ctgcgagagc tgatcgatga      1260
     agtgacccga cacgtagatg gattggcgct gatcgaggac gagttggata cagtttccga      1320
     aaggtttgtg gtgaatctta ttgccggtgc cctggataag caaacccgga aggagtggga      1380
     agcttcaatc ccacacaagg aaataccaac gtacagcgac acgattacgt ttttgaagaa      1440
     gcgatgtgcc atcctcgaac gctgtgaagg tgtttctaac tctccatcca acgcaaaaac      1500
     gagtgttcca gtgagaaacc catgcaacct ggtgagaggc gcacaaccca aggcgtgtgc      1560
     tatcactggg agttccgagg cagcctgcga actgtgtgct ggtgttcatc ccaacttcaa      1620
     gtgtgaagcg ttccgtgcaa tgtctgttcc acaacccaag gcgtgtgcta tcactgggag      1680
     ttccgaagca gcctgcgaac tgtgtgctgg tgttcatccc aacttcaagt gtgaagcttt      1740
     ccgtgcaatg tctgttcccc aacgtcaagc gaaggttcga gagctgaaat tgtgctacaa      1800
     ctgcttacga aagggccatc caagcagttc ctgcagttcg ccgcgcacct gccagaaatg      1860
     tcaaggtaag caccacacac tcttgcacat tgaaacccaa tcaaatgcga atatccaagc      1920
     ctgtgaaact cctccgacaa ccatgtcttc aactccacaa gttgctacac cccctgaagt      1980
     cgaacctatt ccgtctatta gtacgacttg ctcagtaagc aaagctcctc gtcttgataa      2040
     cagcctcttg atgaccgctg ttgtaaatgt tctggatagc agtggcaaat tccaaccttg      2100
     tcgtgctttt ttggattgtg ggtcccaggc tcatatggtg tccagagagt tggtcgattc      2160
     attgcgtcta cctcgtaccc ctgccaatgt tgaaatcatt ggagccaacg gtaagaagtc      2220
     tattctctct gaaatggtca aggtacaaat ccgttccagg cattctgatt tcgaatcaca      2280
     gttggagtgt ctcgttactg atgagataac aggcgtgaca ccgtctcgta aatttgatac      2340
     ccagtcatgg cttctaccat ctggcctccc gcttgccgat ccaacgttcc acactccagg      2400
     caaaatagat cttttgattg gaatcaaact cttcttcgag ctgttgttgc ctagtaggct      2460
     gagaatctcc gacgaacttc cggttcttca ggaaactcgt ttaggatgga taatagccgg      2520
     tgctgttgat gatgtggatc ccttctccac tcagcagcat tgtaacgtta ttacgctgaa      2580
     accgtgtatt gaatcgtcag aagcttatct cgaagttatt gaatcctcag caatgattgg      2640
     cgaagagcca gtcaaattag ttgacatcaa gaccaatgta caaccaagtg aaccatttcc      2700
     catccgtgat aatgttgagt ttgtcgctac tgagttgaca gcacccgaaa atgtgtcgag      2760
     taaagtagct aatccagtcg caaatacgta tccagctcaa tcccatagag ttgaagttaa      2820
     tccaatgctg ttgccgactc ctaccagagt tgatccgata ctgaagtcgt tcccaaaacc      2880
     actcgaatct catacgatgt ttgagccaag ctcaataaaa tccgaggcac aaccggtgcc      2940
     ccaggtaatc cagaatattc caagctatcg tccaaggcct cagcatttct catgtgaatt      3000
     tcgtatgatg aataaccgat tctcgaatgc gatgatcacg aagcgtttcc cttgtaggac      3060
     cggattttac ccggtctcga agttaccatc gtgttttact agattccgcc cagtgccaca      3120
     gcaatttccg tatgtgattg gatgccatcc ggtaccgaag catatctctt gtttcgccgg      3180
     accccatacc atgacgaaga gtttccaacg tgcgaagaaa gaacctccgt ttcatgagca      3240
     gttcccgtat gcggacagat ttcaccttct gttgaagcag tcgctccacg tgtctgagtt      3300
     ggatccgatg ttgaaacagt ttccagttgc tatcgattat catcccctac tggacaagcc      3360
     tcctgatgta gccgaaatcc taacggtatc cgaatcgttc ttgattccaa gcgcaatcat      3420
     cccggcatgc aatatgcaag gtaagtgcgt tcgatatcaa ccagagttct gagggtaccc      3480
     gagcaggttc tgatacctcc cgatatccac atgatggatg aacaaccttt gaatatgagt      3540
     ggtacctttc caatgaagca atcatcagcc acctgtattc atcaacaata gcgtgacgaa      3600
     caccgaaacc ccgcagaagc cgaatctaag cgttaatatc tagaagataa ccagagttga      3660
     agccatcttc aattttccgc ctgatgttta acctgagata ctcccattca tgaccatgac      3720
     aattattgat tccactgtgc aagtagtaaa tgaaccatcg accaccaagt atgtatcgtt      3780
     gtttagtatt caagttggct ccactcccat ttgagtccat atcccacaat ccagtcatat      3840
     ttctgagctt tgcccggggg gtgaa                                            3865
//
ID   BEL-947_AA-LTR repbase;    DNA;    INV; 553 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 26.08, Created)
DT   30-APR-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-947_AA-I;
KW   BEL-947_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-553
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-553
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4537-4537 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 553 BP; 144 A; 146 C; 117 G; 144 T; 2 other;
     tgttcgcaac tatagctgcg aaaatgaacc gggtctgtga attcaaccct gtatcccgac        60
     gctcatttcc cacccgtctt atgtatgtat tcgcaatgtc taaaccatgt gcaagtgtga       120
     aggtgtgtgt gtgcatcgac catcctcgcc ggtcaaccga ccggcgatgc gtgttgcgac       180
     agcgaagctt ccagaatatc ctcgccgagt cggagcgatc atcgtcatca tcatcgtcgt       240
     cgccgcaaca gcggcagcgt accccaccac agaagagaaa gaacattcta gacttgttcg       300
     tatttgctat aaatatcgat gtgtttccca atgcaatttt agttacagtc cacatttcga       360
     agagtwmaaa tcgcgaataa aatcgaagtt taagtagttt actcgtgact ttccttctcc       420
     agccgaacca aacggtcttt ttcaagacca aagagttgtt ggaaataatt tcttccgagg       480
     ttgagctatc acccatcgag gccaccttca accgaaggtt ccgccattcc ctccaatggt       540
     ctaggacaga cca                                                          553
//
ID   BEL-948_AA-I repbase;    DNA;    INV; 3126 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.08, Created)
DT   01-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-948_;
KW   BEL-948_AA-I; BEL-948_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3126
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3126
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4524-4524 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 99% similar to each other.
XX
SQ   Sequence 3126 BP; 916 A; 705 C; 731 G; 773 T; 1 other;
     atctttaaga taattaaaat tattctcgac ctcacgaatc acacaatgag cgccagtgat        60
     gctcaatgta ttttatgcag ccgaccaaat gccgcggagg cacaaatggt ccagtgcgac       120
     ggatgctatc ggtggtacca tttttcgtgt gcgggagttg gagatagtat agcagatgct       180
     gataaaagtt accggtgtac attatgtaca cgacggaatt ccgcagcgtc ttcgtctaaa       240
     tccaccacat cgacgactgc cagccaaagg gaagctcgat tggcgctgga aatgcagcgt       300
     ttagcagagg aaaaagcgtt gcagtcgaag ttgatggccg agaaattgaa gcaggaccaa       360
     gaaatgcaag agaaagctct acggttggaa aaataccgaa gagataaggc gatcgcggat       420
     ctcatgaaac ttgagcaaga gtttctcaac cgaaagttca aattgctcca tgcacagctg       480
     gacgaagaag atctttcaag tgtgcatagc ggtagatcag acgaagcaga taataatgtt       540
     cgaacctgga tcaataacca tcagataatt gtgagtacca aaactggtga cagcgctccc       600
     actggactca catcaggaac ggttggtttg gcagaaacgg aatcagctcc ggggcttacc       660
     gctcttgaga caacttgcaa taagatccct gcgactgaga ctctttcaaa atcgttcgaa       720
     aacctcattc cgcctagttc ctctggtggg ccagatcaga cagccgattt aggcgggcga       780
     tttatacaat caacaccccg ggcagccgcg gctccgcagc caatgaccaa ctggcacgaa       840
     agcagtaagc accaatcgca tttggcattt gtggcttcag gtggttccgc ctaccctcat       900
     gtggcagctt atgccactca gggagacagt aatgctcctc gggatattgg gcacattggc       960
     gtagctcgtc aagaaggttt gaccaacccg tacgttacta ttccaacagt ggtaagtacg      1020
     ataaattctg acgtctttgc tcggaggact acaggtctga gttacagtaa tagctatata      1080
     ccttcctcaa acgtaatctt acaaggaagt acacagcagc tagggtatgc agatatatcg      1140
     atgtatgttc ctccttcaag aattggcccg acctattccg gtgacgttat tccaccagtt      1200
     tctctgaaca attctgcttc gcagaactca ggcgtacaat ctgcaaccat tcctccagta      1260
     cataccgcgt caaatgcttg gagaaatgtt catcctgtat cgaatcccca tgtagtgact      1320
     gtatccagct atcaaacacc catttcagcg gtgcccattc cacagtctta tcagatgcct      1380
     ttgccgccac tatatggccc aaatactcaa cagctagccg cacgtaacgt ggttccgaaa      1440
     gaactacctt ccttttcggg aagtgcatca gagtggccgt tattcttgag tagttttgaa      1500
     acctccacac aaatgtgtgg atataatgat gcagagaatc taatgcgact gcaaaaatgt      1560
     ttaaaaggcg atgctaagaa agcagtgaac agctttctac tccatcckgc taatgtacct      1620
     gatatcatta atacgctgcg tgtactttat gggaggccag aagcaatcat caactgtctg      1680
     ttagcagaag taagagcgac acctacacca cgaccagaaa aattggagag cattataagc      1740
     tttgggttgg ctgttcgaaa tttgtgtgct catctagttt caacaggtca acagatgcat      1800
     ttggctaatc cggttctgat acaggaatta gtggaaaaac ttccagccaa tattaaattg      1860
     gattgggccc tgtatgcgca gcgtatgaat cacgttgatt tgaaaacatt cgcggattat      1920
     atgaacgtga taatatcagc agcaagcagt gtttcctcag tcacggacga tttgcataag      1980
     aaggggaaaa tttatacagt ttccaattgt gaggaaacga cagttctcaa tgccgctgaa      2040
     gcttcaggat caatcggcgg tgaccgccct tgtgcagtct gtcagatgtc aggccacaaa      2100
     ccggccgttt gccgatcctt caagtcaaag tcattggagg acaagtggga cgtcgttcaa      2160
     ggagctcgtc tttgcaaatg ctgcttatcc ttgcatggta aatggccatg caaagcatcc      2220
     aactgtggta ttgatggttg ccagcaacgt catcatagat tgttacatcc aggcgatcca      2280
     cgaattgaac aagagcaaac atccccggtt tctagcacaa tttccattca tcagcaacat      2340
     cgaaatgttt tgctccgcat aataccagtt gttatacatt ttgggatacg gtcggttcat      2400
     acttatgccc tcttagatag tggttccgat tctacgttga tagaaaagtc tttagcacag      2460
     caattagggg tagaaggtcc agcctctgaa ctgtgcatgc agtggactaa tggtgttatt      2520
     cgaaaagagg aaaattctca aaagctcgaa ttaaacatct ccggtacgac ctcgggcacc      2580
     caattcacac tgcgcaatgt acaaacagtt gagaatctgg gcttgccaca acaatcaatc      2640
     tgcttcaaaa aattcgaaaa cgcttaccag tatttgagag gcattcctgt tcagagttac      2700
     agaggagcag tacccggtat tttgataggg cttgacaatg caaaattgga aacgccgctt      2760
     aaaatttgtg aaggacgcga aagtgaaccg attgcagcga aaacaaggct gggatgggta      2820
     ctgtatggta attctggggt aataggatcg caacaactgg ctactaaaac aaatgtggca      2880
     gctgacgaac gattcatctc tgaggaactg atcgaaacca tgagcaatac ccaagtagtt      2940
     tcaaagggcc ggtcagatct ggataagaac ctcgacactc atggtggtcg aaagcaacaa      3000
     tcgacaagga agaccaattt ccttgtacgc aattccgact ataacaagct tgatggagct      3060
     gtccgtgcta atgttggcag gaatatgtat agcttaagga ctcatgaagc aatacgggcc      3120
     ggggca                                                                 3126
//
ID   BEL-948_AA-LTR repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.08, Created)
DT   01-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-948_AA-I;
KW   BEL-948_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-415
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-415
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4538-4538 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 415 BP; 156 A; 78 C; 75 G; 106 T; 0 other;
     tgttggcaac acggttcagc acgttctgca ccacccgtac agccgatgac gagtatgaat        60
     aggagaacaa tcatctatcg aaataccagc gactgatagg ggaataataa aacagtagaa       120
     gtgaagattc catgcagtga gttaaactct aaaataactc ctaatttcaa gactgaatgc       180
     ttaatttaat aacaaacaac actacttcga cagatataaa aacggtaaaa ttattaattg       240
     ttacaaagcg gtggatattt ggtacacaga aaggactaat tatgtgagta aacctaaaat       300
     tgtatatcga tgaatttcct aataaaactg aattgtttta gcttaaagct aactcctaca       360
     cacaaatgcg agtttgctaa aagaggtccg agcccatatc taccccgtgg caaca            415
//
ID   BEL-949_AA-I repbase;    DNA;    INV; 6147 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.08, Created)
DT   01-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-949_;
KW   BEL-949_AA-I; BEL-949_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6147
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6147
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4525-4525 (2021).
XX
DR   [2] (Consensus)
XX
CC   Flanking LTRs are 98% similar to each other.
XX
SQ   Sequence 6147 BP; 1691 A; 1373 C; 1620 G; 1441 T; 22 other;
     ttcttcaaag attttcatcc ggagttggat gattgttgcc cattgctgcc cctgaggaga        60
     agttaccggg aagacattcg ccgattgaac gacccacgac tgaagacaac catcatcatt       120
     accgccgacg ggaagctgga ggtttgattg cagcaaattc aagtcagtaa aagctccttt       180
     tcactttgcc tgcaccacaa ttgtggtcct tacagttaga gtaggctagt cttcgagaca       240
     actgaaatta ggctaattta attcaatcat gcccagaaac ggcaaaaacg tcactagtac       300
     agagggtatt gataagccat gcaaaaagtg caataaaagg gagggtgata ataattgggt       360
     ctgttgcgat gggtgtgaat cgtgggaaca tttccgttgc gcgggtgtga acgagtcaat       420
     cgcggataaa agttggaagt gcagtgattg tcttgccgat tgggacggcg cagacgataa       480
     atcgaaatcg ggagtgtcgt ttaatgaatc ttccgtgagt aaaagcagca gtcgtgcatc       540
     gcaaagatta catctcagtc tgcagcactt ggaggagcaa cggaagctga gtaagctgcg       600
     cgcagaggaa gccgccaagt tgaagcagct ggacgaggaa caggagtact taaagcaacg       660
     atatgatttg ttgatgcagt tagctgacga aaaagattct tctagtaggc gaagcggagt       720
     aagcagtaaa cggaccggga taagcgtaaa aagtaaacgt gaccagttgg agaaatggtt       780
     gaagggggct gcagtggacg aagctggaca gtcgaagcca tcttcgtcgg aacaggtagc       840
     tgtcctgccg gttcacacag taagtgaatc tattcagccg tccatggtag ttagcgagtc       900
     gcaattgcca gttgtttctt cgcaaaacgg ttcgtcgcat atttctgccc ttgcaaacgt       960
     gaatcttttg cgtcctcctg tatcggtgat tacgggaaat gtcccgacgt tggcaaaatc      1020
     ttatgaacaa ctgctgacta gtcaaggagt cggagtctcc acaatgccag ctgttccagc      1080
     atctgtagcg caacaatttg aatcatcagt tccgctccaa ccgtcaacta tagtatcgaa      1140
     tgcagtactt tcgggactgc aggatcttcg aatccggaac cccaactcga ttttggaggc      1200
     tttacccacc gtaagctcgg cgctgggtac aatagtttct gcagctccta ctatgacgtc      1260
     gcacatttct attggttcaa gtggtctgat gccaacagtt tacggaagtc acccgtacta      1320
     cacggccgca ccaatgcgat atgtggcgcc aacaaatgcg acagagggat tcgtccaagc      1380
     aaaccagtcg caaagcagtt cgccatgcgc tcaaccgcaa ggaattccag tcgatgcaac      1440
     agttttccga gagaatatat caactaggaa ccaaggagtg ccagtaggat caagtatgtt      1500
     ccagccacca tttgatgcgg ccggatcatt aggaacggga ttgggtgcag tgcgaattag      1560
     tcctccagta gggccatcga gtgcccagct ggctgcccgt caagtaatgc ctcgcgagct      1620
     gccgaagttt aatggcgatc cgcaagagtg gcccattttc ttcagttctt tcaagaacac      1680
     aacggaagtt tgtgggtaca cagatgccga aaatttagca agattacaac gcagtttggg      1740
     aggatctgca ttagaagcag ttagaagtcg actactgcta ccggcttcag taccatatgt      1800
     gatggatacc cttcacaaac tctacggaag gccagaaatt ctaatcagtt ctctcctgaa      1860
     gaaggtgcga agcgtgccac cacccaaatc agataatttg agcactttag ttacttacgg      1920
     tttggcgata cagaatttgg tggatcacat cgtcttggcc gatcaacagg cccacctgtc      1980
     gaatccgatg ttgctccaag aattgatcga caaactaccc acctcactga agatgcagtg      2040
     gggtacctac aagcaagcgt ttgcggttgt caacctggct acctttaaca gttttatggc      2100
     ggggctggtg aatctggcgt cagaattgac catcgatgtc gactctgctc aaaatcatca      2160
     caaacaagtc agagcagaga aaccgaagca gcgggaaaag ttattcacac acgccaatgg      2220
     atcaccgagt gcaccgggaa aagagaaaga ggcaccagct gagaggacaa acgcaaaagc      2280
     ctgctcatat tgtggaaatg aaaaccatca aattgtgaac tgtgccagct tcaagtcatt      2340
     ggatatcgga gcgagatgga aagctatgcg ccagaagaat ttgtgtcggt tgtgcttggt      2400
     tccgcatcga aagtggccgt gtcattcgaa gaaagagtgc ggcttggatg gctgtcgtat      2460
     tcgtcatcat atgcttttac acagtagtca gcccagccga agtgaacctg tagaaactac      2520
     gaagccaacc gaagcagtac accataacta ccaccatasg cagtcgttct ccctcttccg      2580
     ttatctgcca gttacactct atggaaacgg aaaacaagtg gaagcatacg ctttccttsa      2640
     tgatggatcg tcgtcgacat tgktagaaga gacgatcgca gttcagttag ggatcgaags      2700
     agagccggac aacctttggt taggatggac cggaaagatt ggcagacacg gaaaaggcga      2760
     ctcgatgaag aagttctttg ccgtcgagga atctgttgtg acaaaaccca tsgagtccga      2820
     acaagatcaa cgagctcgca gtattttaga agcaaccaca gtacgccgag gatctagagt      2880
     tgagactggt ttgttgtggc gcaaggagaa catccactwt ccggagagtc accagatggc      2940
     gatgagtcga ctccggggat tagagaagcg tttatccaag gactctgagc ttcgaagaag      3000
     agtgactgaa cagatcaaca gttatgaaca aaagcagtac atcactaaag catcgactga      3060
     agagattacc agtctaaatc ctcaccgtgt ccggtatcta ccgctaggag tggtgatcaa      3120
     tcccaagaag ccaagtaaaa tccgtatggt ttgggatgcg gcggcgaaag tcggtggagt      3180
     ctgcttcaac gatatgctcc ttaaaggtcc ggatcttcta gtgtctctaa tggaggttct      3240
     gttgcgattc cgacaaggaa aaattgctgt atgctctgat atccgggaaa tgtttctgcg      3300
     aattctcatc cgaaacgagg acagatggtc acagtgtttt ctttggagaa gcagtcctga      3360
     agaagatgta caagtctacg tgatcaatgt agcmatgttc ggttctacga gctctccgtg      3420
     tacagcgcag tttgtgaaga attggaatgc ctccgacttc agtgaacagt atccmcgagc      3480
     ggtagaagca kcaactaaaa accactacgt ggatgatttc ctcgacagcg tcaattcggt      3540
     ggaagaagca gtagaactag tgaagcaagt aaaagacatt cacgcagcag ccggtttcca      3600
     gttcgggaaa gtactgtcca acgatcagga agttttagat cgactaggag aaaccagttc      3660
     ggagaccagc aaacaacttc ctctcgacaa agacgcgacg tatgaacgag tccttggcgt      3720
     gacgtggatt ccatcagagg atacatttac gttcaatcag cacggagtgg aggaagttct      3780
     aggcatggag tcggatgttc caamgaagcg gcaggtgttg cgtatcgtca tgaagctgta      3840
     cggcccctta ggatttgtcg cgcactttgt tgtgcaggga aaaatactga tgcaggagat      3900
     ttggcgcact ggcacaaact gggacgagcc aatcgcagaa gaattmcacg agctgcggac      3960
     taggtggatc gaacagtaca ggaagatcaa cgaagtgagt gtcccacgtt gtttcttcgg      4020
     aatgttttgg ccaaaacagg tcagtagtat ccagatccac gtatttacgg acgcaagtgt      4080
     gtccgcatgt gcgtgcgtgg cttatttgag agtgacagtt gatggagaga gtaagtgttc      4140
     attgatagct gcaaaaacga aagtagcgcc gcttcgtaca ctctccattc cacgcttgga      4200
     actgcaagct gccatgatgg gttcacgtct gctacaaaac atttgctcag cgcttacaat      4260
     cagtatccaa agtcgtttcc tatggacaga ttctgccaca gttcttgcat ggcttcgctc      4320
     tgacagtcgt cgttatcacc aattcgtttc ctttcgcgtc ggcgaaattc tgtcgctcac      4380
     cagtgtggat gaatggcgct acgtaccttc tcgtgagaat gtggcggacg atgctacaaa      4440
     atggagcgca ggtccatcat tcgatccaga ctgtcgttgg tatcaaggtc cagcattcct      4500
     gcaagatccg gacagtcagt ggccaacaga gcgattatta gctacattgg aatcagacgc      4560
     agaatgtgaa gaaatacgtt ttgtttcagt tcatcgtaca gtcgaggaag tggtagatgt      4620
     acagcgtttt tcaaactgga acagactact acgtgcagta gcatacgttc atcgagctgt      4680
     agcagtatgg aagcacccgt caagtgacag aatgcccctc ggaatactga gccaaagtga      4740
     gttcatagaa gcagagcaaa cactgtggcg tcaagctcaa gcacagacat atgctgatga      4800
     aattctactg ttgagcgaag ggcagaatgt aacgaaggca agttcgattc gtgcgctgtc      4860
     tccatttttg gatgacaaag gagtcttacg ggtcggggga agaatcgagc acgctcctaa      4920
     catttcctac gatacgaagc atccagtagt actgccaaga agccacagga ccacgtacct      4980
     tcttgtgctc agttttcacc agcgtttcct tcacgccaac agtgagacgg tttgtaacga      5040
     actaaggcaa cagttctaca ttccgaggat gcgaacagta gtgcggagcg tgtgtcgcag      5100
     ttgtcagttc tgtaagatta agaaggcaac tccagcgcca ccattgatgg gtccacttcc      5160
     gaaggttcgc ctgacgccgt tcattcggcc attcacttat gtgggcgtgg attatatggg      5220
     tcacttcgaa gtgaaagtcg gtcgcagtat tgtmaagcgg tggatatgtc tgttcacctg      5280
     ccttacagtt agagcggttc atttggagtt ggcacacagt ctatcaacga agtcctgcgt      5340
     gatggcattc cgacgattcg kcaaccgacg aggtgctcca ctmgaggtct tttcagacaa      5400
     cggcaccaac ttcgtagggg ccaaccgtca gttaacagaa gagwtgcaaa ggatcaaggc      5460
     aatcaacgga gactgtgcct ctacsttcac caatgcktgc acgcagtggc acttcaacgt      5520
     tccmgctgct ccccacatgg gaggaccatg ggagaggatg gttaagtcag tgaaagtagc      5580
     tatggcagsc atttctgaca gtccgcacca tcctagcgac gaagtatttg aaacgataat      5640
     gctggaagct gagggaatcg ttaacagtcg tcctctaact cacgttccgt tggatgcagc      5700
     tgaccgmgaa gcgctaactc caaaccactt tttgctgtac ggttccagtg gagtcaaaca      5760
     gccaacagtt acagtcgatc agtcggtcac tctccgagac agttgggtag tcggcaaaaa      5820
     tatcatggac gagttttggc gccgatgggt gttggagtat ctaccgatgc tcacaagaag      5880
     aacaaagtgg ttcgagaacg taaagccgtt ggagccgggt gatctggtcg tgataatcga      5940
     cgagaaaata cggaacagtt gggaaagagg acgaatcctg gaagtctttc cagamaaatc      6000
     cggtcaagtg cgacgcgcgg ttgtgcaaac agttcgagga gtattcgcca ggccagcagt      6060
     taagctgsca gttctggatg tttctggaga taggacgaag tcggatgaag tcgctcagga      6120
     gacggaagtg gttcacgggt cggggga                                          6147
//
ID   BEL-949_AA-LTR repbase;    DNA;    INV; 629 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.08, Created)
DT   01-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-949_AA-I;
KW   BEL-949_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-629
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-629
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4539-4539 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 629 BP; 212 A; 105 C; 140 G; 172 T; 0 other;
     tgttaccggc aacactgttg accgcgaaac ggcggtgaga ccactgtccg ttccctcgca        60
     actgagcggt agtcgccgag tggaatgaca gaacggagaa aacggaatca gtgtcagatt       120
     gaaaaacaaa ccgtggaagc attattgaga agttctttcg tgaaagttaa ccgcgtgtaa       180
     tgaacaatta gccggtggat ttattaaaac tgatcggtaa tagtggttta taacagtgct       240
     aatttgtata taacaactga atttatccgt ctagatatca caatcaagtg tttgagaatt       300
     accacgcagt aagtggtgaa ctgaatagtc gaataaggta tgtctgtgag aaactgtaaa       360
     tctatttgcg ctatactgaa ttaacctaga aaataacatg tggattagtt gtaacagtta       420
     ctgaatgtat ttttcataca ggatagcact cttacagtgg gacagttaag gcaaacagcg       480
     agaaaaatct gaagtagaac actgaaaatg taagaatact gtaaactgta actgtaacct       540
     tttgtaacca tgaattcaat atattacagc tttgaagctg ctaagtctgc aactgcaagg       600
     aacggtgttt gttctgacta tcgagaaca                                         629
//
ID   BEL-94_AA-I repbase;    DNA;    INV; 6339 BP.
XX
AC   supercont1.289;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-94_AA_;
KW   BEL-94_AA-LTR; BEL-94_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6339
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.289; Positions  918997  925335.
XX
CC   Positions [5345-5920] - Integrase core
CC   'AATAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1349..6339
FT                 /product="BEL-94_AA-I_1p"
FT                 /translation="MSESYQQNQAIPHQDPVRPTQQQLAARQSLAKELPRF
FT                 SGDPAEWPIFISNYRYTTEACGFTDGENMLRLQRCLSGPALETVRSRLVLP
FT                 AAVPQVIETLRLRFGRPELLINALLRKVREIPAPKSDKLEGIIDFGMAVQA
FT                 LCDHIEAANELAHLSNPSLLQELVAKLPADQRMMWAGYKRGFQHVDLKTFG
FT                 DYMASVVRDATSVVTFEPEKRNCGRERPKNRGFVNSHATEGSSRSVDSSSE
FT                 PEQPKQFVCAHCHKGGHRVRECNAFKQLHVDDRWRRVRTLGLCQNCLYNHG
FT                 RRGCRGRKICDIDGCQFRHHTLLHSPRGPPKSSEHTMQVAENHTHRRPKSS
FT                 MLFRIIPVTLHGTNGSINTFAFLDEGSDLTMVENELVASLGVKGTPLPLCL
FT                 RWTGNTSREEKDSQQVTIEINGIGQDKRHKLMNARTVSSLGLPRQSFDADE
FT                 AVKAHKHLKGIPLTSYRDAMPQILIGVDNLRLALPLKVREGDGTAPVAVKT
FT                 RLGWCVYGPRGSSNRESYSFLICECSCDKTLHESVKDFFAIEGAGAGPAEI
FT                 PLKKEDERALTIMETTTRRVGDRFETGLIWKEDEVEFPNSYPMAVRRLECL
FT                 ERRMDRDPALKENLHRQIREYDAKGYAHKATREELETSDARRVWYLPVGAV
FT                 MNPKKPGKVRVIWDAAAKVEGVSLNTTLLKGPDQLSSLPAILFRFRLYRVA
FT                 VSSDIQEMFHQIRIREEDKNSQRFLWREKPSEKPSVYLMDVATFGSTCSPA
FT                 SAQFVKNLNAEQHRELYPEAAKAIVDDHYVDDYLTSFSTEDEAARIASDVR
FT                 TIHGNGGFKLHNWRSNSSAVLERLGEVQAEAEKQLALVDGAKTERVLGMLW
FT                 TPRTDELSFSTQMSEEVQDLMRTATRPTKRQVLRCVMTLFDPLGLLSPFLI
FT                 HGKVLIQDLWREGTEWDEQVNTEVFAKWQRWTQMIEYIAEIRIPRCYFRHA
FT                 EQTTYRNSELHVFVDASEVAYSCAVYLRTLNHGADPQCCLIAAKSKVAPLK
FT                 PWSIPRLELKGCVLGVRWSKFVSENHGVHVSKMVFWTDSRTALAWIKADPR
FT                 NYRQFVSFRVGEILESTTASDWRWVPSKSNPADEATKWGSGPYFDHDSKWF
FT                 QGPDFLRRPEAEWPRPKEVLTATTEEIRATILFHYSFDPVVDFDRFSSWER
FT                 LLRTIAYALRFLNNSAKAKPKRTGQLQQDELRAAEVTIFRLVQRESYSDEI
FT                 AELSNKTANKPSQDVIGKHSSIYRLIPFLDDNGLLRERGRISAVEGVCYSV
FT                 RHPIILPRKHRVTELLVRRYHQQYRHGNSETVVNEIRQLYNIPRLRLVVRK
FT                 VSRDCNVCKIRRAKPTIPLMAPLPPARLAHHERAFTYTGVDYFGPLLVKLG
FT                 RSNVKRWIALFTCLTVRAVHLEIAYTLSTESCISCVRRFVGRRGPPAEFFS
FT                 DNGTNFQGADRVLRHQIGQGLSETFTGANTKWNFIPPGAPHMGGAWERLVQ
FT                 SVKAAMMEAYSEGKLDDEGLQTLVVETESIVNSRPLTYLPLDSEEAEALTP
FT                 NHFLLLSSNGAKRRSSAAVDIVRCKTNELVRREILGKSWELIERQLDAFWK
FT                 RWLTEYLPVIRRQPKWFEENRTLKAGDLVMVAESTGRNKWERGRIIRTIPG
FT                 PDGRHRQAVIQMGNKALLRPVSRLALLDLKGFREVPENSGLHPGET"
XX
SQ   Sequence 6339 BP; 1675 A; 1676 C; 1721 G; 1267 T; 0 other;
     aatcttcaaa attcgagcca acatgcatgg aagccaggca ccgggaggat cgaaaggaca        60
     cgtgtgcaaa tccagctgcg cggcctgcca gcgcccggac agtgcggagg acatggtcca       120
     gtgtgaccat tgcgacatct ggaaacatta ttcgtgcgcc ggggtgaacg aaagtgtcgc       180
     tgggagatcg tttgtatgtg gcgattgttc tgtccagcaa actgatgacg tcatctcagt       240
     gcgaacaact tcgagtcgat ccagcgcaac atcaacaatc tctgtctgcc taagccagct       300
     ggtagaacga caacgattag agcgcgctcg cctggaacta gagctccaac gtcgtcatct       360
     ggacgagcag cagcagttaa tcgataaggc catcggcgga gaggaaatgg acgatcgtcg       420
     cggtgaaggt tcatctgaag ttgtaaacaa aaccacccca gcggcaccca gcaaacctat       480
     cggaacaacg tttcttcccg aaacaccgct gggtccgtcg gatcgtcgat cgaaggcaca       540
     gttggacgct cccaagtctg cagcgtcagt aatggttttg attccagtca cagcactgga       600
     accaaagact gtgaaatatc ttcaaggaaa gaagaatccc caagccgcct tccaagatct       660
     caggagccgg gatgagcagt gcgagaagcg cgccaatcca acagctgacc agctggctga       720
     cctacattct cagctggaac tgtgtcgcaa actcctggag gggatccaga ccggagcagc       780
     agttaaggaa tcgattcaac agccaaattt ccaaaaacag cagcgagtat gtcacgcgta       840
     gtgagcaata ccggtgcaat cccgaaggca aaccgatcgt tgcttacggt ccccgaggaa       900
     gatcggaagc gttccgatta tcaatccgac gacggagcag taggaggaac cacatcgccg       960
     gaagaaatgt ggccgttgaa gaatccggta agccaaacgg gtcaaccgcc ggtaagtcga      1020
     gcagtcgaat cagctgcaat gtgtccgaac gacttggaac ccccaggtaa gcgtcaagcc      1080
     ttgagtcact ccattgaaaa tacgatcata tgtgcccctg atcattgccc cacgaccaat      1140
     aatccacttg caagagggca gctgcgattt gtcgcgcgcc cagatgaaat ccgatcgcct      1200
     ccaaccaacc ttcgagagca gctgcgacag ccactcgcgc actcgaacga tgccattgta      1260
     tctgacaacc agcctaagtc tctctcaacc gatttgctaa cgcgtaatcc tccctcgcga      1320
     gcggttgaaa cgtctcagcc cctctcgtat gtcagaaagc tatcagcaaa atcaagcgat      1380
     tccccatcaa gacccagttc ggcccacgca gcagcagctg gcagcaaggc agtccctggc      1440
     caaggaactt cctcgattca gcggtgaccc agcggaatgg ccgatcttca tttcgaatta      1500
     tcgctacacg acagaagctt gcggcttcac tgacggtgaa aacatgctcc gcctccagcg      1560
     gtgcttatca ggaccagcgc tcgaaacggt gcgcagtcgg ttggtgcttc cagcagcggt      1620
     gccgcaggta attgaaacac ttcgtttgcg gtttggacgt ccggagttgc tgatcaacgc      1680
     tctgctgcgc aaggtacgtg aaattccagc ccccaagtca gacaagctgg aaggaatcat      1740
     cgatttcggg atggcggtgc aggcattgtg tgaccacatt gaagctgcga acgaactcgc      1800
     tcacctttcg aacccgtcac tgcttcaaga gcttgtagca aaactccctg ctgatcaacg      1860
     gatgatgtgg gccggctaca agcgaggatt tcaacacgtc gatctgaaaa ccttcggcga      1920
     ctatatggcg tcggtagttc gcgatgcgac cagtgtagtg accttcgagc cggagaagcg      1980
     gaactgtgga cgtgaacgtc cgaagaacag aggattcgtc aactctcatg ccacggaagg      2040
     atccagtaga tcagtggact cgtcgagtga accggagcaa ccgaaacaat tcgtttgcgc      2100
     tcattgccac aaaggtggac accgagtacg cgaatgcaac gcgttcaaac aactgcacgt      2160
     cgacgatcga tggcgccgag ttcgaacttt ggggctatgc cagaactgtc tatacaacca      2220
     cggacgacga ggatgccgag gccgtaaaat ctgcgacatc gatggctgcc agtttcgcca      2280
     ccatacgctt ctccactccc ccagaggtcc acctaagtca tccgaacaca ccatgcaggt      2340
     ggcagaaaac catacccatc gccgtccaaa gtcttcgatg ctctttcgaa tcattccagt      2400
     gaccctgcac ggaactaacg gttcaatcaa tactttcgcc tttctcgacg aaggttccga      2460
     cctgacaatg gtggaaaacg agttggttgc atcgctcggg gtgaagggta ctccactccc      2520
     actatgcctt cggtggactg gcaatacatc gcgcgaggag aaagattccc agcaggttac      2580
     cattgaaatc aatgggattg gtcaagacaa gcgacataag ctcatgaatg ctagaaccgt      2640
     cagcagcctt ggacttccac gacaaagttt cgatgcggat gaagcagtaa aggcccacaa      2700
     acatctgaag ggcattcccc tcacaagcta ccgcgatgcg atgccacaga tcctcatcgg      2760
     cgtagacaat ttacgacttg cacttccgct gaaagtgcga gagggtgatg gtacagctcc      2820
     ggtggcagta aagaccagac ttggttggtg cgtctacggc cctcgaggta gcagtaaccg      2880
     cgaatcctac agcttcctta tttgcgaatg ctcgtgtgac aaaacgctcc atgagtcggt      2940
     gaaagatttc ttcgccattg aaggagcagg agcaggaccg gcggagatcc cgcttaagaa      3000
     ggaagatgag cgagcattaa ccatcatgga gactactact cggcgagttg gggaccgctt      3060
     cgaaacagga ctgatttgga aagaagacga ggtggagttc ccgaacagct atcccatggc      3120
     agtacgtcga ctagaatgct tggaacgcag aatggatcgt gatcctgcac ttaaggagaa      3180
     tctgcatcgg caaatacggg aatacgacgc gaagggatat gcgcacaaag ctacgagaga      3240
     agaattggaa acatcggatg caaggcgcgt gtggtacctg ccggtcggtg cggtgatgaa      3300
     tcccaagaag ccgggcaagg tccgagtcat ctgggacgca gcggccaaag tcgagggtgt      3360
     ttcgctgaac accacactac tcaaagggcc agaccaacta tcttctcttc cggcgattct      3420
     gtttcgattc cgcctgtata gggtggcagt tagctcggat atccaggaga tgttccacca      3480
     aatccgaatc cgagaggaag acaagaactc ccagcgtttc ctatggcgcg aaaagccgtc      3540
     cgagaaaccg tcagtttact tgatggacgt tgccactttc ggcagcacat gctcaccggc      3600
     ctcagcacag tttgtcaaga atctcaatgc tgaacaacac cgtgagctgt acccagaagc      3660
     tgccaaggca attgtcgatg accactacgt tgacgattat ctgacgagtt tcagcacaga      3720
     agacgaggct gcaaggatag ctagcgatgt acgaaccata cacggcaacg gaggattcaa      3780
     gcttcacaac tggcggtcaa acagcagcgc ggtgttggaa cgcttaggtg aagtgcaggc      3840
     tgaggcagag aagcagctgg cactcgtgga tggtgcaaag acagaaaggg ttcttgggat      3900
     gctgtggaca cctcgaaccg acgagctgag cttctctacc cagatgagcg aggaggtgca      3960
     agatttgatg cggacagcaa cgcggccgac gaagagacaa gtactgcggt gcgtgatgac      4020
     gttattcgat ccgctggggt tgctctcacc gttcctcatc catggcaaag tcctaatcca      4080
     agacctttgg agagaaggta ccgagtggga cgagcaagtc aacaccgaag tcttcgcgaa      4140
     gtggcagcgg tggacacaga tgatcgaata catcgccgaa atacgaattc ccagatgtta      4200
     ctttcgacac gcagagcaaa cgacgtaccg caattcagaa ctccatgtat tcgtcgatgc      4260
     gagcgaggta gcatactcct gcgcggtcta tcttcggacg ctgaaccacg gtgccgatcc      4320
     acaatgctgc ttgatcgctg ccaaatcaaa ggtcgctccg ctgaagccgt ggtcgattcc      4380
     tagactagaa ttaaaagggt gcgttctagg cgtacgctgg tccaagttcg tcagtgaaaa      4440
     ccacggtgtt cacgtatcca aaatggtgtt ctggacggat tccagaacgg cactagcctg      4500
     gatcaaggcc gatcctcgga actatcggca gtttgtatcg ttcagggttg gcgaaatcct      4560
     agagagcacg accgcaagcg attggagatg ggtgccatca aaatcaaacc cagccgatga      4620
     agcgactaaa tggggaagcg gtccgtattt cgaccatgac agcaagtggt tccagggacc      4680
     cgactttctg cgccggccgg aagctgaatg gcctcgtccc aaagaagtat tgactgcaac      4740
     taccgaagag atacgcgcaa cgattctgtt ccattattca ttcgatccgg tagtggattt      4800
     tgaccggttc tcctcttggg agcggcttct gcgaacaata gcatatgctc tccgattttt      4860
     gaacaactcg gccaaggcga agccgaaaag aaccgggcag cttcaacagg atgaactccg      4920
     agcagcagag gtgactatct tcaggctagt gcagcgtgaa tcctattcgg atgagatcgc      4980
     agagctctcc aataaaaccg cgaacaaacc gtcgcaagat gttatcggga aacacagctc      5040
     catctaccga ttaataccgt tcctggacga caatggcctg ctgcgtgagc gcggtcggat      5100
     cagtgcagtt gagggcgttt gttacagcgt gcgccatccc attatacttc cgagaaaaca      5160
     tcgagtcacg gagctactcg tccgcagata ccatcagcag taccgccacg gcaattcgga      5220
     aaccgtggtc aatgagatcc gccagctgta taacattcca agactacgcc tggtcgtcag      5280
     aaaagtcagc cgcgactgca acgtgtgcaa gatccgtcga gcaaaaccaa caattccact      5340
     gatggcacct cttccaccgg cgcgcctggc acaccatgaa cgtgcattca cctacactgg      5400
     ggtggactac ttcgggcctc tactggtgaa gctaggacga tccaacgtta aaagatggat      5460
     cgcactgttc acgtgcttga cagtgcgagc cgtccaccta gaaatcgcct acacattgtc      5520
     tacagagtcg tgcatctcct gcgtccggcg atttgtaggt cgtcgaggac cacccgccga      5580
     atttttcagc gataatggga cgaattttca gggagctgat cgagttctgc gacaccaaat      5640
     cggccagggg ctgtcggaaa ccttcaccgg cgccaacacg aagtggaact tcataccgcc      5700
     cggagcacca catatgggcg gagcgtggga acgcttagta cagtctgtga aggccgcgat      5760
     gatggaagcg tactccgagg ggaagcttga tgacgagggg ctgcagacac tggtcgtgga      5820
     gacggaaagc atagtgaact caaggcctct gacatatttg ccactcgact ccgaggaagc      5880
     agaggcgctt acgccaaacc atttcctact attgagttct aacggggcga aacgacgcag      5940
     ttcagcagcc gtagacatag ttcgctgtaa gacaaacgaa cttgttcgcc gagaaatcct      6000
     gggaaaatcc tgggaactaa tagagcgcca gctagacgcc ttctggaagc gctggttgac      6060
     agaatatctg ccggtgatcc gtcgacaacc aaaatggttt gaggagaatc gaacgctgaa      6120
     agcaggagat ctggtaatgg tggcagaatc aacaggacgc aataagtggg agcgcgggcg      6180
     aatcatccgt acgattcctg gcccggatgg ccggcatcga caggccgtca tacagatggg      6240
     aaataaggct ctgctgagac cggtgtcacg gttggcattg ctggatctaa aaggctttcg      6300
     tgaagttccg gagaactccg gactacaccc gggggagac                             6339
//
ID   BEL-94_AA-LTR repbase;    DNA;    INV; 658 BP.
XX
AC   supercont1.289;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-94_AA_;
KW   BEL-94_AA-I; BEL-94_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-658
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.289; Positions  918339  918996.
XX
SQ   Sequence 658 BP; 205 A; 141 C; 142 G; 170 T; 0 other;
     tgtcaacgca gaagacggcc agctggcaac cctgccacca accgattcaa aagcgtcgct        60
     ttccgtcacc gaagcgttgc gtcaaaacca atgacagctg tcacacgtag tggatgagct       120
     gtcaacgcac cgtttccggt catcaattgc cacatttctt gattagaaag aagtgcaaaa       180
     ccatacaaag tgcattagaa caattcagtt gttaaatcag aatttgctaa agtgaataaa       240
     ataagttttc ggtgtttagt tgcttagtct ggtaggagtt tcccagttta caaagttgtg       300
     cggttagcga tttaaaactc agtttgtccg gtttcagagt cgcagttgag tgtccgtttg       360
     aagcacgtgc cgcagtcagg gttcccttcg gttagccgaa agtcctgtaa gaaattagaa       420
     atttagaaaa gtatttagaa aactaataca accgcggcaa atttcgcagg tagtcggtcc       480
     tcggaggagg ttagatttac cagaagggcg tgcaaaaatt gataagttca ccgaattgta       540
     agtagaatta aaacaatgaa aacacatact taccactaat catgttacag ttgaagcaac       600
     aatatacttt cgctatcaaa accggtacga ctttggctca cgccctacac ccgcaaca         658
//
ID   BEL-94_CQ-I repbase;    DNA;    INV; 6293 BP.
XX
AC   AAWU01007086;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-94_CQ_;
KW   BEL-94_CQ-LTR; BEL-94_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6293
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 315-315 (2011).
XX
DR   GenBank; AAWU01007086; Positions   22836   16544.
XX
CC   Positions [5336-5875] - Integrase core
CC   'CTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..6271
FT                 /product="BEL-94_CQ-I_1p"
FT                 /translation="MTTIRPDENCPYCGLPDEADREMVQCDRCDVWYHFRC
FT                 AGVTRAVKHQSWFCGPCQAERHYGPNPELNPAGSEEDNFSVPPSELSSLRS
FT                 HTSSSIRQGLQLLDEQFQVRQKRLAEEKAMQERRLALEEEYAKQQNDLREE
FT                 HLKVRQELLSSLRDMSVSGSRGSARSRASAVRSERVRQWMEKQQNPVENPR
FT                 KVVPRGAFPNIKPAQDVSPLRNPNMPQQCERASKIDGTVRVGKPQEFPSNE
FT                 ASGGTGYEGVSDGLGRRNVPANPEQNVGRPCPAPRQQHNMPSTFAQDTRRP
FT                 CPAPRNFVDGLGQRKMPSTSARDALGTRRVEDYVPFAGQPREGVEGEAGQY
FT                 WPLISRGNDGRTDRNSFGDPPAPHADGTLALLSGAPNQQLQPQPPQPFDVG
FT                 DGRYRFKSPQEHLQYNQSEQRDGNDRGPHDRGQFGGITPEQLASRQVLPRK
FT                 LPIFSGSYEEWPLFISCYNTTTEACGYTDNENLVRLLDCLRDPALGHVRGQ
FT                 LLLPQSVPRVIETLRRIYGRPEQLLQSLLMKARRCEPPKSDRLETFITFSL
FT                 VIEQLCDHLEATNLQDHLVNPMLLQELVDKTPAGTKMEWVRFKRRHGQVTL
FT                 RTFADFMAGIAEDACEVAPMIDNKQLAGDKRVEKRTKEKGFVHAHDATTVP
FT                 EQTTKERVDIKPCRVCQSTEHKIRNCDVFKNLTQADKTTLVDKWKICRICL
FT                 NEHGDSRCRFKIQCNVEQCRERHHPLMHGEAATTHAAEATEAAHNAHRADI
FT                 GQMQFRLVAVTLHHGTRSVRTTAFLDEGSSMSLVERSLVDVLGVKGGELEP
FT                 LRLIWTADISRTEKNSKKISVQISTAGCDQKHQLALRTVTELKLPTPSFKI
FT                 SSLTKQFKHLGDLEVDDNLGKPRLLLGLDNLHLFAPQESRIGQPNEPIAVK
FT                 SKLGWSVYGPSSDNKCGGGVVGSHFTENISNQELHDLIKEYFAVEEAGVTA
FT                 GVLESDDDRRARVILENTTVKVGGRYETGLLWRSDDYDFPNSYPMAVRRLE
FT                 QLEKKLSKNPELAENVRRQITEYQLKEYAHKATPKELSDSDPRKVWYIPLS
FT                 VVVNPRKAKVRLVWDAAASVNGISLNSQLLKGPDLLVSLIEVLCRFRERPV
FT                 AFGGDLQEMYHQVRIRSEDKQAQRFLFRDNPTLKPDVYVMDVATFGATSSP
FT                 ASAQFVKNKNAAEFAHVHPEAAAAIIQRHYVDDYFDSADTEEEAIERAQAV
FT                 KHIHAQGGFHIRNWVSNSTRFLEALGEPNQKQTVQFTSDKHTNTERILGIT
FT                 WNSVLDVFVFSIPTNEALQPFLTGKARPTKSIVLKFLMSFFDPLGLIAHYL
FT                 VHGKILMQDIWRSGCDWKATINDDCYAGWTQWIKWLPHLEQLQIPRSYFGD
FT                 IRSSRIESVELHVFSDASEKAYGSGAYLRIVCDGAIRCTLALAKTKVAPLK
FT                 LLSIPRLEVSGAVLGARLANTAETCHSLPISRRVFWVDSATVIAWIHSDHR
FT                 KYKPFVAHRISEILSLTSVDEWHFVSTKSNVADDLTKWRKRFTMSSEDRSI
FT                 RGPDFIYTDSKSWSVPATPIENVEEELRAAFLFHEIHLPEPVIDAERFSSW
FT                 KTLVRSLAVIFRFRSNCQRKARGLPIEAVPATSAVTGHVKGAVSSTEVPLR
FT                 QEEYAQAEHCFWRLVQADMFPDEVKVLMKNRELPREEWHQVEKTSVIYQLS
FT                 PFLDHAGVLRMEGRAEAAEELPFDLRFPVILPKKHPITIKLVEHYHRKLRH
FT                 GNNETVVNEMRQRFFIGNLRAVVRMVANDCQLCKIRKSRPAVPRMAPLPIQ
FT                 RLQPYLRPFSFVGVDYCGPITVTVGRRSEKRWIAVFTCFNTRAVHLEVAHS
FT                 LNKQSCLMALRRFMCKYGVPREIFSDNGTNFHGANNEGVLIRAINNNCADV
FT                 VTDARLKWNFNPPSAPHMGGVWERMVRSVKECLKVLDDGRNLTDEVLLTVL
FT                 AEAAEIINSRPLTYQPQDASSPEALTPNHFLRVGPANEELVLEAANVGQAL
FT                 TDSYQRSQMLAQKMWKRWISEYVPSLNRRPKWHEEREPVKAGDLVFIADEE
FT                 QRKTWIRGIVDEVIKAKDGRVRQAVVRAQGKLYKRPVAKLAVIEVGANGRS
FT                 EPHSEKPRD"
XX
SQ   Sequence 6293 BP; 1605 A; 1645 C; 1768 G; 1275 T; 0 other;
     ttctcgaaag attatgacaa ctatccggcc agatgagaac tgcccgtatt gcgggcttcc        60
     ggacgaagcc gatcgggaaa tggtccaatg cgaccgatgc gacgtctggt accacttccg       120
     atgtgccgga gtgacgcggg cagtgaaaca ccagtcatgg ttctgcgggc cgtgccaggc       180
     cgaacgacat tacggcccga atcccgaact aaatcctgcc ggcagcgagg aggacaactt       240
     ctcggtccct ccatctgaac tttcgtcgct ccgatcccac accagttcgt ccattcggca       300
     aggactgcag ctgttggatg agcagtttca agttcggcag aagaggttgg ccgaggagaa       360
     ggccatgcag gagcgaagat tggcgctcga agaagaatac gccaagcaac agaacgatct       420
     acgtgaagag cacctcaagg ttcgccaaga gctgctctcg tctctgcgag acatgagcgt       480
     tagtggaagt cgaggcagtg cgcgcagtcg agcaagtgct gtgcgcagtg aaagagttcg       540
     gcaatggatg gaaaaacagc aaaatccggt ggaaaatcca cggaaagtgg ttccacgcgg       600
     agcttttcca aacatcaagc cagctcaaga tgtgtctcct cttcgaaacc ctaacatgcc       660
     acaacagtgc gagagggcga gtaaaattga cggcactgtc cgtgtgggta agccgcaaga       720
     gtttccgtcc aatgaagcaa gtggcggtac aggatatgaa ggagtttctg acgggctggg       780
     gcgccggaat gttcccgcaa acccagaaca aaatgtcgga cgcccatgcc ccgctccacg       840
     acaacaacac aacatgccat caactttcgc ccaagatacg cggcgtccgt gtccggcacc       900
     aagaaacttc gtcgacgggc tggggcagcg caaaatgcca tcgacctcag caagagacgc       960
     gctaggaacg agacgagttg aggattatgt gccctttgca ggacagccaa gagaaggagt      1020
     agaaggagaa gcggggcaat attggccgct aatctcacgt ggaaacgacg gcagaactga      1080
     tcggaacagc ttcggagatc cacctgcgcc ccacgcagac ggcacacttg cgttgttgag      1140
     cggtgctcct aatcaacaac tgcaaccaca accgccacaa ccttttgacg taggtgacgg      1200
     acgctaccgt ttcaagtcac cacaagaaca tctacagtac aaccagagtg agcagcgcga      1260
     tggaaacgat cgtggccccc atgaccgtgg tcagtttggt ggaataacgc cagaacagct      1320
     tgcctcgcga caagttctgc cccgaaagct gccaatcttc tctgggagct acgaagagtg      1380
     gccgctgttt atcagctgct ataatacaac caccgaagcg tgcggctata cggacaacga      1440
     gaaccttgtt cgtctcttgg attgtttgag agatcctgct cttgggcatg tacgcggtca      1500
     gttgttgctc ccacagtcgg ttcccagagt tatcgaaacg ttgcggagga tctacggacg      1560
     tcctgaacaa ctgttgcagt ctctgttgat gaaggctaga cgttgcgaac cccccaaatc      1620
     tgatcgactg gaaacgttta tcaccttcag cctggtcatt gaacagctgt gcgaccactt      1680
     ggaggcaacg aaccttcaag accacctggt aaaccccatg ctacttcagg aacttgtgga      1740
     caaaaccccg gctggcacga agatggagtg ggtccgattc aaacgccgtc acggtcaagt      1800
     cactctgaga acgttcgcgg atttcatggc cggcatagcc gaagacgcgt gtgaagtggc      1860
     gcccatgata gacaacaagc agcttgcggg tgacaaacga gtggaaaagc ggaccaagga      1920
     aaaggggttc gttcacgccc atgatgcgac tactgttcca gagcagacca ctaaagaacg      1980
     agttgatatc aagccctgtc gagtctgcca gagcaccgag cacaagatcc ggaactgcga      2040
     tgtgttcaag aacctaacgc aagcagacaa gacgacacta gttgacaagt ggaagatctg      2100
     tcgcatctgc ctcaacgaac acggggactc gcgatgccgg tttaagatcc agtgcaatgt      2160
     cgaacaatgc cgggagcgtc accatccgtt gatgcacggc gaagctgcaa caacccatgc      2220
     tgcggaagca acggaagcgg cacacaatgc ccatcgagct gatattgggc aaatgcagtt      2280
     tcgcctcgtc gcggtcacgc tgcaccacgg aacgcgttct gtgcgaacga ccgcattcct      2340
     ggatgagggc tcatcgatga gtttggtgga gcgctcactg gttgatgttc tcggcgtcaa      2400
     aggaggagaa cttgagccgt tgcgcttgat ttggacggcg gatatcagtc gaactgagaa      2460
     aaactccaag aaaatcagcg tccagatatc aacggccggg tgtgaccaga aacatcagct      2520
     ggcgttgcgc accgttaccg agctgaaact accaacaccg tcgtttaaaa tatccagcct      2580
     gacgaagcag ttcaagcacc tgggagacct cgaagtcgac gataacctag gcaagccgag      2640
     gttgcttttg ggattagata acctgcattt gttcgctccc caagaatccc gcattggcca      2700
     gcccaacgaa cccatagccg tcaagtcaaa gctgggttgg agcgtgtacg gccctagcag      2760
     tgacaacaag tgcggcggag gtgtcgtcgg ttcacacttc acggaaaaca tctcgaacca      2820
     agagctgcac gacctcatca aggagtactt cgccgtggag gaagctggcg taaccgctgg      2880
     agttctagaa tccgacgatg atcgccgagc aagagttatt ttggagaaca ccacagtgaa      2940
     agtcggcggc cgatacgaaa cgggactctt gtggcgctcg gatgattacg attttccgaa      3000
     cagctatccc atggcggtgc gacgtctaga gcagttggag aagaagctct ccaagaaccc      3060
     agaactggcg gagaatgtgc ggcgacagat tacggagtac cagctgaagg aatacgcgca      3120
     caaggctacg ccaaaggaat tgtccgattc ggatcctcgc aaagtgtggt acataccact      3180
     cagcgtggtt gtaaacccca ggaaggcaaa agtgcgactg gtgtgggacg cggctgcttc      3240
     cgtcaacgga atatcgctga acagtcaact cctcaaaggc cctgaccttc tggtgagctt      3300
     gatcgaagtt ctctgtcgct ttcgtgagcg gccagtggct ttcggaggtg atctgcaaga      3360
     gatgtaccac caggtccgca tccggtcgga agacaagcaa gcacaacgat tcctttttag      3420
     agacaacccg actctgaagc ccgacgtgta cgttatggac gtggctacat ttggagccac      3480
     tagttctcct gcatccgcac agttcgtcaa gaacaagaac gcagccgagt tcgcccacgt      3540
     ccacccggaa gcagcagcgg cgataatcca gcggcactat gttgatgatt attttgacag      3600
     tgcggatacg gaagaagagg cgatagaacg agctcaagca gtgaagcata tccacgcaca      3660
     aggagggttc catatacgta actgggtgtc caactcgacg cgcttcctgg aagcactagg      3720
     agaaccaaac cagaaacaga ccgtccagtt caccagcgac aagcacacca acaccgagcg      3780
     tattcttgga atcacctgga actccgtgct ggacgttttc gtgttctcca tcccgacaaa      3840
     cgaagcactg cagccattcc tgaccggaaa agcccggccg accaaaagta tcgtgctgaa      3900
     gttcctcatg tcgttctttg acccgctagg cctgatcgct cactacttgg tacacggaaa      3960
     aatcctcatg caggacatct ggcgttccgg ttgtgactgg aaggcgacga taaacgacga      4020
     ctgttacgct ggatggacac agtggattaa gtggctgccc cacctggaac aacttcaaat      4080
     ccctcgcagc tactttggcg acattcgcag ctccagaatt gaatccgtcg agcttcatgt      4140
     gttcagtgac gctagcgaga aggcctacgg aagtggggcc tatctgcgca ttgtttgcga      4200
     tggagccatc cgctgtacgc tcgccctagc gaagaccaag gttgcgccgc tcaagctgct      4260
     gtcgattcct cgcctcgaag tttcaggggc agtccttgga gccagactag ccaacacagc      4320
     agaaacttgt cattcgttgc caatttctcg acgagtgttc tgggtggact cggctactgt      4380
     gattgcctgg attcactctg atcatcgaaa gtacaaaccg ttcgtcgcgc accggataag      4440
     cgaaattctc tcgctcacga gtgtcgacga gtggcacttc gtttctacga aatccaacgt      4500
     ggcggacgac ctgacgaagt ggaggaagcg atttacgatg agcagcgaag accgttcaat      4560
     ccgaggacca gattttatct acacggactc taagagctgg tctgtgcctg caacgccgat      4620
     tgaaaatgtg gaagaagaac tgagagcagc tttcctgttc catgaaattc acttgccgga      4680
     gcccgtcatc gatgcagagc gcttttcatc ctggaagacg ctggtcagat cgctggccgt      4740
     catcttccgc ttccgatcaa actgccagcg caaggcgcgt ggtttgccga ttgaagctgt      4800
     tcccgctaca tctgcagtaa ccggacacgt gaaaggagca gtttcgtcca cagaagttcc      4860
     tttgcgccaa gaagagtacg cccaggctga acattgtttc tggaggttgg tgcaggcaga      4920
     tatgtttccg gatgaagtga aggtgctgat gaagaatcgg gagctgcctc gagaggagtg      4980
     gcaccaggtg gaaaaaacga gtgtcatcta ccaattgtcg ccttttctcg accacgctgg      5040
     ggtgcttcga atggaaggcc gagccgaggc tgcggaagag ttgccttttg acctgcgttt      5100
     tcccgtgatc ctaccgaaga aacatccgat taccatcaag cttgtagaac attatcatcg      5160
     caagctccgg catggcaaca acgaaacggt cgtcaatgaa atgcggcaac ggtttttcat      5220
     cgggaatcta cgagccgtcg tacggatggt cgcgaacgac tgccagctgt gtaagatccg      5280
     taagagtcga cctgctgtac cccgtatggc accgctaccg attcagcgtt tgcagccgta      5340
     cctgcggccg ttcagtttcg tcggcgtgga ttactgtggc ccaatcactg taactgttgg      5400
     gagacgcagc gagaagcggt ggattgccgt gtttacctgt ttcaacacca gagcggttca      5460
     cctagaagta gcccacagtc tcaacaagca gtcctgtctc atggcactga ggaggttcat      5520
     gtgcaagtac ggcgtgccca gagaaatatt ctccgacaac ggaacaaatt tccacggcgc      5580
     gaacaacgag ggagtcctga tccgtgccat taacaacaac tgtgcggacg tggtgacaga      5640
     tgctcgactc aagtggaatt tcaaccctcc gtccgcccca cacatggggg gagtttggga      5700
     acgcatggtc cggtccgtta aagagtgtct gaaggtgctg gatgacggta gaaatttgac      5760
     ggacgaagta ctgttgacgg tgctagcaga agctgcagaa atcattaact cgagaccttt      5820
     aacgtatcaa ccgcaagatg cttcgtctcc ggaggcgctc acgccgaatc actttttgcg      5880
     cgtaggccct gcaaatgaag aattggttct tgaagcggcg aacgtaggtc aagcgctgac      5940
     ggacagctac cagcggtccc agatgttggc tcaaaagatg tggaagcgct ggatatccga      6000
     gtacgtgccg tcgctcaacc gccgacccaa gtggcacgag gaacgggaac cggtgaaggc      6060
     gggtgacttg gtgttcatcg cggatgaaga gcagcggaag acgtggatcc gcgggatcgt      6120
     ggatgaggtg attaaggcga aggatgggcg agttcgacaa gctgttgttc gtgctcaagg      6180
     aaagttgtac aagcggccgg tggcgaaact ggcggtcatc gaggttggag ctaatggacg      6240
     gagtgaacct cattccgaga aacctcggga ctaaggttca cgggctgggg aac             6293
//
ID   BEL-94_CQ-LTR repbase;    DNA;    INV; 655 BP.
XX
AC   AAWU01007086;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-94_CQ_;
KW   BEL-94_CQ-I; BEL-94_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-655
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 316-316 (2011).
XX
DR   GenBank; AAWU01007086; Positions   16543   15889.
XX
SQ   Sequence 655 BP; 193 A; 134 C; 142 G; 186 T; 0 other;
     tgttgccgac cctgtagagc tgtgccaggc aacctcaaac tgtacaatct tggaaagtag        60
     atcgagcccg gttgacaggt ctgacagcac tgtcaacgaa ccggaaggag tttttttttg       120
     tctttttcgg ctaaagctgg agcaagcagc tcgcctcgtt ttttgcttag ccacaaaatt       180
     agttaaagtg cgtattgcgc gaggaaaata attcagaaat ttgtaatagt tagcagaact       240
     acacttagcg cgtaagtgga catattttta cttgttcaaa catgtgtaaa acgttgaact       300
     ttctgtagga aaccacacag cccacccaag cctactttga ggttagaaaa cgccatcgaa       360
     tccaacggtc gaagcaagaa ttgtttaatt cgattgtaag ttgttgatta ttagctaaat       420
     aagcgcaagt aacgttaacc tttgttccca aggaccggac gttcggtgaa ggagatagtt       480
     aggagtgttt cggatacacc gtttaaccga gggaaccata atcgtaagat tcgccacctt       540
     gtttgaatta ccgttactta tttgaaatgc atttcagttt cgagctgaac caaacggaca       600
     cgctacgaag acggtttctc gagtattttc tccgaaaata aacacttttc taaca            655
//
ID   BEL-950_AA-I repbase;    DNA;    INV; 6422 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 26.08, Created)
DT   02-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-950_;
KW   BEL-950_AA-I; BEL-950_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6422
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6422
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (02-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sampled sequence. Flanking LTRs are 96% similar to each
CC   other.
XX
SQ   Sequence 6422 BP; 1782 A; 1419 C; 1287 G; 1921 T; 13 other;
     tttttggtgc cgaaacccgg gactgtcagg tccctwccat cgttatcgac cggccgtaga        60
     aktcagcgwg gatcaacttt gaacaatagc gggtcctgtt tgggggattt tcgtcgctgt       120
     tgcaagtccc gcgtgatcat cggccggatt cattcgtctg caacaaccta tcttgaccta       180
     gacggcggct tggamacgga gaagtcgtta gtgtggacag twacagcgag caaaggacgt       240
     aggkcaagcc aagtgagscc aggtaaacgc ataggaggca aaaggtkagt ggaccaccat       300
     ttcgattctt taagawtata cattgttctc ctgckgttga ttgttcaccc cactgaacgt       360
     gcggcatata gttacscaat atggtgaata agcacaccaa kaaaactaaa aagcttcttt       420
     tgaagaggaa caatatcatc ggttcctttc aattaataaa agaatacgca tagttctcgt       480
     gtttaatcgc gatttccctc aactaaagtt tagaatcgaa aagctagaca gcatgtggga       540
     caaattcaat gaagtgcaag tcggaattga gtttgaagat gaggaatcag aagagttttc       600
     cgctgaacgc attgaattcg aaactcaata tttcgagttg aaaggctctt tagccagcaa       660
     acttgccgtt ggtgctgaaa gaggagatag gtctttcggt tcccctggtg ctccgcctgc       720
     acatgttcct tctgttcgcc tccctgaact gaaaattcct gatttcagtg gagattatga       780
     tgagtggatg aattttcacg atctttttac cactctaatt cacaccaatg tccaactttc       840
     ggcagtccag aaatttcaat acttgaaaac tgtactgaaa ggtgatgctt tgcgacttgt       900
     gcaatcaatt tccgtctcgg cagcgaacta cgccatcgct tgggacttac tgaagaggcg       960
     gtttgataat aaaaatctgc taataaaaca acacttttcc gcattgatgt gcattccatt      1020
     ggcgcgcaag gaatcatcat ctgcactgta caaccttgct gatgatgatt ccttgcgcgc      1080
     cgatggaatg cacatcaatg cggaaaagtg ttgttttatt agcagatttt tattatcaaa      1140
     ccgcctcttc agtaagtccc aagcgatggc gtagttcgct gccgagacgg aaattgattg      1200
     cacaagtcgc aaagcatcac ctttcaggac atatagcata tatgcgagtt tggcctgtat      1260
     tattcacaaa atttatttca tttcacttga acttgaactt gactaatttg ttcttcgtgc      1320
     gcaaagcctg acgtgacgga tcactgtatc aaatagtcat ctgacgttgg tttagttacg      1380
     aagacgtttt ttttttcagt ttcatcgtcg actttttcca tttgacggcg aaaattgtat      1440
     acaatgtttg gaatgaattc agatgttttt agcaatgctt ctttcagggt ctactgtcat      1500
     ttatccatta gtatctctaa aaacggacca acaatagttt tctgcaagaa acacgaaaag      1560
     aacaaagtta tggttatcga aatcgtttca ctttttctca ctataaactg tcatcaaaat      1620
     tttgtttcaa gtagcgcttt tcttctatag cctacacgtc gattcccaag aaatttcgga      1680
     aatttcgtta gcttcccctg tcaggataaa aaatcatatg aatgttttca ttggtgtact      1740
     tgaataggaa aatatcgtga gtatggcgtt ttgattttga ttgccgataa aagtcgaatg      1800
     atgccaaagc cgtgaattat tctatwtaaa tctacacttt ttagatatgt accatttttc      1860
     gacgtttttc acctttttac acgaggtttc aaaaaatctt taaagaatgt ttcagaacaa      1920
     aaacgacttt ttggatctgt taaaatccac acctgcacaa acaaccagaa aggtcgattt      1980
     ttgtatgaat cgttaaataa ttttgtaaat ctgattttaa gagtgagtgg tttgtgttca      2040
     acaaacaatc ttgtgaccat atcccactat gcagcatcac ccacaatgta ttgagctgac      2100
     ttgcgatagc aattgtcgac gaaagaagtc aatttctctt ccatatgttc gccacgtaga      2160
     acatttttgt agttgttgta ggcacagtag caagaatcgc cggaatccag aactaggtac      2220
     atgttattca ttctcatgca tgcgctctcc caacagcgaa aatagcgacc cttggttgaa      2280
     acgcgtgacg gaaaaactat tatagaaata atttcgcaat aaatatctat accgagtggg      2340
     tcgcgcgaaa ctgatcgaat agatagtgtg atgtcacgac gacggcgttc caaagacacg      2400
     gtcaacgcaa agtttgcctc agttcaatta atagagctta attgcaattg cagatgacgc      2460
     ggttcgcttc gcagtgaagt gtctcgattt ttttgcactg cgttagaaaa atatgttggc      2520
     tttgtttagt gcactagttg tccattttat tgttacggtt tcaattcgaa cttcaggatt      2580
     gcatttaacc tgattactgt aaatttcgtt atttttcgtt atatatccaa gcaatatctg      2640
     catttctatc attttaacat gatacctaca agtttcatat caaatctatg tttatattaa      2700
     atatataaaa atatgatttc tcgtggattt ttttttttac aaaaccaata tagaaagctc      2760
     gcagttaaca tttaataccg ttggctttat gtttcgattt tatttgttct gggctatgtt      2820
     taatcttgat tgttttacga tcctcctgtc ttaagggaag gttggaatgt aacgatattt      2880
     ttataaaatg atttcgcttg gaaataactt ctaagcaaag caaactttaa ctaaacattc      2940
     agtaagaatt attcagttca acaacaattt aactgatttc tgattgttta tttttatagc      3000
     agagacatgt tttatgacat atgtagcatg attgattcag ttatggctcc agaagccgtc      3060
     aatataattt ttcacttcat aaattcaaac agaattcatt tactacaatt tcatctatcg      3120
     gaaagtgcta aacagcattc ctacttctta atctgccagc acattgtgtg atctgtaaaa      3180
     atcatttttt atcattctga caacaatcca tatcagcgac acatagcata tctacgaagc      3240
     aaaaggcact cagcagctcc atacaatacc atatcatagc gagtcgtcga cagatgacaa      3300
     ttccattagt gggcgccatc ctcatattct gctatacatt ttgaatattc atcgcgtgtg      3360
     atttttcctc tgttcgtcgt tgtcgttttg gagacctcta tatttcaacc aggcttgccg      3420
     caccacaccg tagccaatcc accgaattga aaagcgaaaa tggatgcttt gtatttatac      3480
     cggtggtgat cctcgccaaa ccattatcaa ttcctttgct tgggtacggg agtaaatttt      3540
     tgtgtgatac atagtttgat tgaaatttat ctgtataaaa taaattctcc acatattagg      3600
     ggcctccatc aatttagtaa acatctaaac atactgcaac ttatcatatt tagaaaaaat      3660
     ccatccgatg aattgaaaat ttatcggcta aaaacggtga cgtatggaac agcgcctgct      3720
     ccgtaccttg ccacacgcgt cctcaatcag ctcgctgagg acgaggcaga aaattaccct      3780
     ctcgctgctc cgaatgttgg caaatgtttc tacgtcgatt gagcttcttc gttctggtgg      3840
     atttagtatg cgcaaatggt gcagtaatag ccccacagtg ctttcctata ttccggaatc      3900
     acttcgagaa tctcgtacag aactcgagat ctgtcagtca gattcggtga aaacacttgg      3960
     acttctttgg catccgcaga cagatgaatt cagttttaac gttccagagt tctcatcttc      4020
     gttggcaatc acaaaacgac tggtactatc agagatgtag cgcttatttg atcccatggg      4080
     tctagttgga gcaattattg ttagtgcgaa aatctttcta caagccctgt ggttggaaaa      4140
     attcgactgg aacgatgtgt tgcccggaga ttaccaagct tggtggatac aattccggac      4200
     tgaaatcaca cgtctttcgc cttttcggat tcctcggcga atactcgcca gtgacaatca      4260
     gttattggag ctgcatgtat tttcggacgc ctcagatcat gcttacggat gctgcgttta      4320
     tgtgagatca atcagttcga ctggccaaca atactgcaat ttggtgatgt ctaaatctcg      4380
     tatcagccta tttcacaaac tatctatccc ccgtctcgaa ttgtgtgctg cagtgctcgg      4440
     tgcacaatta gctgaatatg tattggattc aaccaattgg aagtgtccgg taacattttg      4500
     gacagattca tccatcgtgc ttcattggat agcttcgtct tcgtcgtcct ggaaggtatt      4560
     tgtgtcgaac cgaatagccg aaattcatcg gcttactgca ggtagtatgt ggcgccacgt      4620
     acccacagaa ttcaatccag cagacaaaat ttcgagagga gtctctccgt ctctcttaca      4680
     gggagactct ctttggtggt atggaccacc ttatcttcgg caaaattcgg atacttggcc      4740
     tgaaaactgt ataaaattga caccattaca ttcagaagct cgaaaatctg aatcgaaaca      4800
     agtagtttca gtcgtagtat ctactgatta caattcaatt gaattcgcgg aacagcactc      4860
     atcgctctcc catctgcaac ggaaggtagc ttggatcctg cgtttcgtgt acaattgccg      4920
     agttcagtcc tctaaaaatc gcaaactcgg ttccctttcg catacggaat taagcaatgc      4980
     gctaatgcat cttatcaagc aaacacaatc ggtatacttt tcggcagaaa ctgaattcct      5040
     caagaaacac gacggacgtg ttctcaaagc gttttcattc aagtcacctt taaaaaccct      5100
     ctgcccattt ctggatttcg aaggtttatt gcgaataacg ggccggcttc atcacctcaa      5160
     cattccttac gacatcaaac atccattgat attaccacaa aaggcccatc ttactattct      5220
     catcgtcaga tcaacccatc ttcaagtgtt acatgctgga ccacagctcc ttttgtcaaa      5280
     gttacgtcaa cgctactggc cagtgcgagg taaagacctt gcgaaaaggg ttgttcgaga      5340
     atgcatcacc tgttttcgct gccgtccccg cagcctcact cagatcatag ggccactgcc      5400
     agcagcccga gtcactccgt cgcgcgcgtt tattcgatgt gacgtcgatt attgcggacc      5460
     gtttaccgtt tcgatcccga atcgttgcga actgccggtc aagatacacg tcgcgatttt      5520
     cgtgtgcatg tcgtcgaaag ccgtacacat cgacatagtg tacaatctca cgtccgactc      5580
     gttcatcaac gtcctgaaac gcctcgttag acgtcgcggt cgagtctctg acatatactg      5640
     cgacaacgca cgaacgttcg ttggagcaaa tcgtaagctc gaagaaaacc gaaagcaatc      5700
     cgacgcgatg caccattcac gagggctgca tactttctgt gcacaaactg gaatcaattt      5760
     ccatttcaat cctgccagtt caccacactg cggcggcctt tgggaggcct ccgtgaaaac      5820
     cttcaagtat catctttacc gagtcatgaa gaatacggtg atcaacattg atgacttcac      5880
     taccctgata atccaaattg agggaatcat gaacacccgt cctctatgtc ccttgtccac      5940
     gaatccagca gacgtcgttg ccttgactcc agggcacttg cttgtgggag aacctgtcta      6000
     ctctctcccc gagcctgatt tatcaaccac tcctattgat cgtcttaact cgttccagaa      6060
     aatgcaacga ggcttccagc atttctggaa agcctggtca cgagattacg ttgccattta      6120
     caggaccgca agaaatggcc aatagttcat ccggatatcg aggtgggaac actggtgctc      6180
     ttaaaggacg ataacgcccc actaatgcac tggaatctta gtcggattga tcaggttttc      6240
     ccaggacagg atggatacat tcgtgttgtg caggtccgta ctgcaaacgg acattatcgg      6300
     tgggcaatca ccgaagtgtg cccattatca attgaaggac tgtcatccca acatcccact      6360
     acccactgag catggaggcg cttggtgttt tgttgaaagt gacctttcaa cggggcccgg      6420
     aa                                                                     6422
//
ID   BEL-950_AA-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 26.08, Created)
DT   02-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-950_AA-I;
KW   BEL-950_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-490
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-490
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4540-4540 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 490 BP; 118 A; 110 C; 110 G; 152 T; 0 other;
     tgttcgtaat catgctgaaa ttgaattaat tgaattcgtt attatcaaat tatcattaaa        60
     ctaccccatt tgagacacgt gaaatagtac tctagtactg catttgtaac tcaccacaaa       120
     tttaggagag aatgtaggga gaatccgatc ggtgccgtgc cgatcgagct tgcgcgatag       180
     tgttaggtag gccatttggg gttctcttag agaatattac tagggcacag ttagtcttgc       240
     ttcgatactg atcgaataaa catcaaaagt acaaatcgcc tccggtgcat tttctcgttt       300
     tcgcgcgaaa gaaagaacca tagaagtcct tcgaactata agcggtttgc cgcagtatta       360
     ctcgccttgt tctcggccgt accgttcgat tcgtcgtgtt gctgctgttt gctcctgctg       420
     ttctgctgct gctgttggcc atcacaatct gggccgtgat ctccgtcgtc gttctccagg       480
     tttgccaaca                                                              490
//
ID   BEL-951_AA-I repbase;    DNA;    INV; 4655 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 26.08, Created)
DT   03-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-951_;
KW   BEL-951_AA-I; BEL-951_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4655
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4655
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sampled sequence. Flanking LTRs are 98% similar to each
CC   other.
XX
SQ   Sequence 4655 BP; 1480 A; 922 C; 1046 G; 1207 T; 0 other;
     aaattaaatt ttccgtttaa ctcggaatgt caagcagaag cgtagcgggt gccgggaatc        60
     atctccggag taagactgat tctcctggtg gtgagggggc gagctgcgga acatgtcgcc       120
     gtgtggataa cagccggatg gttcagtgtg atgagtgcga tgtttggtat cattacgact       180
     gcgtggatgt gaatgatagt gtcaggaacc acgattggag ttgtaatggg tgcataaggg       240
     gaacgctgga aaagcagagg cgtgcgttaa gtgaacagtt ggagtttttt gaacagcaac       300
     aaaggcagtg gcaatatgag caacaaaagc ttctagagca gttggaagaa cagcagaagc       360
     ttgagcagcg gcagaaacaa gaattgcagc agcgcaagca ggagcagatc gtccgcatgc       420
     agctaggaca gttgcaattg caagagccaa gtgtgccgtt gggaaaaact acaatagaac       480
     ttgaagtacc attgaaatct gttggcgtga ttccgaagca aaataggcaa catgtgaaga       540
     tcgtggagaa agctgcaccg gaaggatttt cggccgaccg tcgacgcaat actgaaccgt       600
     tttcaagctc aaccgcccat aatgaaaaaa catcagacag atccgatagg gcatcttcga       660
     agtcgtcaaa acgctcagca aagtttctac aactcgaagt gagagccttg gaagccagac       720
     aggcattgga aaagaagcag ctagaagagc gattgacatt agagcgagat atgctggaat       780
     atgacgattc cgaagcggag tcgaacacaa gtctggagaa gatcagcgaa tggttggaga       840
     aaacggagaa cgttggacag gaagcagaaa ttttcttgaa tgacacgccg ctgccggtgt       900
     acaacgaaaa actgcgcaaa actgtgaata cgttggtgca accgtgcctt cccaatagct       960
     gtgatcaacc tggaccgtct actcatcctc agcttcccgg agaatttgcg cccaacgcaa      1020
     acgttaggca tccacaagcc agtggatata ttccaattgt cacatcgtgc taccgacctg      1080
     gcacacatcg accagcagta tctggtgcta cacgggagcc tatgtacagc gtagcatcac      1140
     agcagccgat tgtgtcgaca gctgttccgt cgacaaacta ccctcaaagc gttgtccaga      1200
     atatgggtac ttctcagagg atcgaccatg caccactttc aacctcaact gcgcaacaaa      1260
     atctgcaaca ttatctacta caaacgaata atgaacctgc accgctcaat agcggccatc      1320
     tggctgcgag acagacggtt aaggatctgc caaagttcgg tggggatcct gaagattggc      1380
     caagattcat cgcggcgttc gaacgtacct ccaggatgtg tgcatttcgt aacgatgagc      1440
     ttcttgatcg actggagcgg agccttcacg ataaagctct cacagccgtc aagagtctac      1500
     tacttcttcc cgaaaatgtt ccggttatca taaatcggct gaaaacatta tttggaaatc      1560
     cagagtttat tgtggaaaga atgattcaga aagttcgtat gatgccgcca ccgaaagcag      1620
     acaaattgga aacaattgtt gacttcggcg ttgcagttca gaatctctgt gcaacgatac      1680
     aagtgtgtcg aatggacgaa cgactctaca atgttgctat tctacaggaa ttagtagata      1740
     gtcttccatc tacactgaaa atgcagtggg cactctaccg aaaagagatc aacacaccta      1800
     caatgttaga ctttaaaaac tggcttgaag ggatagtaga tgctttgagt caggttatta      1860
     gacctgctgt gtggctaaaa tcgcaaaggt cggacaacaa gttggagaga caagctcgaa      1920
     aaaacgaagc ctatctccat gtccattcca ccgttccacc ggaaccggta gatcataatt      1980
     cttgcttagc gtgcggtaac gcgtgcggta acgagtgcag catgctcgat gagtgtagca      2040
     gttttctaga aatgtcaccg aatgcacgat aggcattggt aaatgaaaag aaaatctgcc      2100
     ggaaatgttt atctaagcac ttcgaatcct gcgaaagaag gattcaatgc aatcagaatg      2160
     gatgtaccta tctacatcac tggttattgc acgatggtaa caaacacaag aagccacaac      2220
     cagatattcc gacacatatc gcatcatgta acattcatta cactcaactt ggaaataatt      2280
     tactaaaata cattccagta acgttgcatg gaaaggagaa atcaatcaat acctacgctt      2340
     ttctagatac tggatctaca tccacactga ttgaacacag tttatggaaa gaattaaacc      2400
     tcagcggcga gaaatcccca ttgtgtatct cgtggactgg tggacaaagt agaagtgaga      2460
     aaggttcagt agtattctca gcagaaatct cgggtgttca ctctcctgag cagagatttt      2520
     atcttccgga ggtacatact gtgcaaaatt tagatcttcc tgcgcagtca atgttagtat      2580
     cggatctagc aaaacaattt acatacctgt ctggtctaca tgtagattcg tacactgagg      2640
     tcaaaccgca aattctatta ggcgttgata actgtagact tgaatatcct cttgactcca      2700
     gagaaggtgg tcaaaatcag ccaacagcag ttcttacaag actaggctgg gtaatctacg      2760
     gtccatcgtc ggtatcagag gaaacaatag taaaggaaga tctgcgtgaa tgcgaaagtt      2820
     tcgagattca acgcgcggag aaaacacaga ccccgcagga tgaaaattgt gaaatgtttt      2880
     ctactaacgc agagcttgga agcagacagt tagcagaaat tgaagatacc actttgaagt      2940
     gcttaatcaa atataaagct caaggatcag tgaaggccaa gaagaagaag aacagtcaac      3000
     ctgcaatatt tggcgataca tgtggagtag acctattcat attttcaaaa atgtctggaa      3060
     actccccagt caaccaatac tttgattttt cattgcgaaa tgaacttctg gccaaaattt      3120
     cactcaattt agagtaaatt tagttgtgct tcaaatcaat tatgtgtttt tgggctattt      3180
     tcaagcttta aaaaatcata actaccgaac gaagcatcaa aatttattga aaatacttct      3240
     acatagtagt ttatccaatt ctacgaacta ttgccgaaca caattttatg attggagcaa      3300
     gttttaacat agtttggttg aggtttgtat ctcgaggttc ttgaaaatct cttttttcgg      3360
     gaattgtttt cactgaacag catgcctgca tgaaagtttc ggatttttaa tttccagaca      3420
     tgatgacaat gcatatctaa aagtcaatcc cgttcaaagg aaccatttat tttacgaaaa      3480
     taaattgtaa aaaataggta attatgaagc acatttgtaa atccactgtg ggtgagccaa      3540
     gagcaccacc gtgagcttca atgaatacaa aaaatgaaca cgttagcact gccttttctc      3600
     agtcgatgat gatgattgtt ttcaaatcgt tctaaatgat cagtgaaatg cgatcaaaac      3660
     aatcatcact cggaaagaaa aagcaatgct aacttgttca attcattcgt ttccggtaca      3720
     tgtgtcatgc atgatttaac tatcatcagg ttgcgatgcg gtgctctatc tttgggcatg      3780
     tacattgtaa tttattgcct ttagcaacat gtaatctgtt gatggtcaat gaattcataa      3840
     atgtattatg tttgattccc gttgactagg gcctgaaaaa ataataccaa tgcatgtttt      3900
     atataccatg tatattgaga aaactgtaat ttctgggtac agcggagtac aaatttggat      3960
     caaacaatgt taaaactcaa tttaatcttg ttagcgtgtt cgacaaactt taacagaata      4020
     gaattagctt tcaaatagtg gtaatagcaa gtggttttga tttcccacat gctagttatg      4080
     atttttcaaa ccttgaaata agcccaaaaa cacgttttca acttgaagca tactgaaatc      4140
     tttatcaaat gagctgaaaa tttgaccaga cattgttctt agcatgagaa ttccaaatac      4200
     tgcttgaccg gtagatttcc agacattttt taaaaatatg aacaggtcta atgtggaggt      4260
     tcttgccaaa cgaaaatcaa atctagcgat aagttcaatc aacatctgtg ggacgactac      4320
     gttcttaggg gagcattctc gatgaatgaa tcgggaatat acacgtgttg gcaacgatgg      4380
     tttcgacaat atctgcagct aaacaatcgt cgatttgaac cgcataatcc attgaaacac      4440
     atccagattg agaatgtagt ggtatacgtt gatctagaga gttcgtggcc aaatgaccat      4500
     gtcataaaag tcaaccgtaa agatggaaag gcgcgtagtg tgacaatgcg aacaccgatg      4560
     aacattgctg aacactcagg tgcgagtatt ggagttttgg atgtcggcac aacggagtgt      4620
     acacaagaac ctggaccatg tgtactgggg gggag                                 4655
//
ID   BEL-951_AA-LTR repbase;    DNA;    INV; 761 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 26.08, Created)
DT   03-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-951_AA-I;
KW   BEL-951_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-761
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-761
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4541-4541 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 761 BP; 284 A; 126 C; 137 G; 211 T; 3 other;
     tgttccgcta tctgcggacg cgcctccatt accaacaagc cccattataa cttgtctcca        60
     tcggttcaac gtcatacggt tgatgatgga gaatcatcaa aacgtgaaag atgacgatat       120
     ggcaaaaagg tacctagcgt attggaataa ccaaaacaag amaaagtgat ctaaattagt       180
     cttgcaaaac agtttctttc ttaattactc actagtgaat ttggataatc ggtgaattta       240
     ttagttacta gccgtattgg acagaaggta aaagtgaatt tcttaaacta gattcgaaat       300
     acttaaaagc agttaaactt aaatatattt gtaaatatca cagatagaat cacagttggt       360
     gtagggaaag ttgatcacaa ttagctgaag atgagagtta aaaacaagta ggaagtacct       420
     tgggaagtat ctacaattat tcaggtaata agttacatat ctttggaata tcaacttaca       480
     aacaaaacta aactaactat gtaggaatca cagacaaacg gaaaccgtac agtaccgmtt       540
     ttcggaccct acggaaacta cgaagtaggc actaaacgtg agtaaaaaaa ttaatgaatt       600
     tagtsaaatg atcaataatt aatgtatcaa acgcattatt gtattccaac agggaaaatt       660
     taacgcacaa gccgtagcaa taaacgaata caaattatct tcggcgagtc gtttaaattt       720
     ttggaaaact gtctaccata ttgttgccga ctttggtaac a                           761
//
ID   BEL-952_AA-I repbase;    DNA;    INV; 5878 BP.
XX
AC   .
XX
DT   08-MAY-2019 (Rel. 26.08, Created)
DT   08-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion: a sample sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-952_;
KW   BEL-952_AA-I; BEL-952_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5878
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5878
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sampled sequence. Flanking LTRs are 99% similar to each
CC   other.
XX
SQ   Sequence 5878 BP; 1647 A; 1284 C; 1351 G; 1596 T; 0 other;
     gtttggtgcc gtgaccagga tctcagggca ttgttattca gttcacgcca gcgaaattac        60
     cgttctggtc cggagaggaa attttttttt cgactataca acgcctgtta cagactggta       120
     ccaggtgagt acctgtccga ttatctaaat tcgcttcgtt gtggtgctgc ttgtgtcgtt       180
     tgggttccag gtactctcgt ggttgcatat tatctcgccg tggcgtcgaa ttcaacatgg       240
     cggacaagaa gttaaagcag aaggagttga aaaggcgtaa cataatggat tctgtgaacc       300
     gcattcagga gttcatggtg aattatacgg aagctgacgc tagagaagtt ccgttgagat       360
     tggagcgttt ggagaagtat tttgagctgt atgaaaccat ccagtccgaa tacgaatcgt       420
     tagatgattc tgatgccttt gcgcaggcta atttgagtgt tcgagctaag tttgtagaac       480
     agtacttccg gttgaaagct gccttgctag caatactgcc acggccagca caagtaccag       540
     tgcaacagcc agtagatcag aaccctccca ataacgttgg gggcttagcg aacgtcaaat       600
     tgcctaccat caaactgcca gagttcagtg gggactacaa tgactggttg acgttccatg       660
     atacgtttct ggcactcatt catttgtccg tcgaactatc taacgtacaa aaattccatt       720
     atttgcgtgc atcgctcaga ggagaggctg cacgtcttac ggaaacctta cccattaccg       780
     cagcaaacta cacagtagcg tggaagatct tgctagatcg atactcgaac aaataccttc       840
     ttaaaaagaa acacatcaag gcgcttatcg agtacccccg aatcaaaaaa caatcttcca       900
     gtagtttgca cgcgattctc gacgaatttc agcccctctc acaaattttg gagcaattgg       960
     gggaaccgat cgatcaatgg aactcaatgc ttgtagaact tttgtcatcg aaactggacg      1020
     atttatctct aatggcctgg gaggaaagag cagcaaggga agacgctccg acatttgaca      1080
     tgcttgccga atttcttcag cagagaactc gagttttgga atccgtgtcg gtaaatcagc      1140
     ataaccagcc taagctaccc agtatctaac aacagctaaa taaaaggtct tctgccgttc      1200
     ggatggccac tcacgcagtg accgaacgcc agtcggagag ggcttcaatg aaatgctgtg      1260
     tgtgtgacca gagccatccg ttgtcgagtt gcaacacctt cggacaattg cccttgaaag      1320
     accgtttgga gatagtgaac agtaaagctc tctgtagcaa ttgtttacga ggtgaccgct      1380
     tggtcagggg ttgcaagtct aaatttgtat gccgaacttg caaaaaacgt catcatacga      1440
     tacttcatcc tggatttgga aatgcacgga catcaacggc ggaaacggat gcggaaacta      1500
     tcgacagcaa tagaggtgcg gaaaacgaaa atcaattgtc ttcggcaccc attctctcaa      1560
     ctaattgctg ttctcaaatc acattccaaa caactctgaa tgcagcttta cgtaacactg      1620
     gggtgttttt atcgaccgtg ttgcttcgga ttgtggactg ctttggcgtg gagcaggaag      1680
     ccagaacact attggactca tgctcccaat tgggttaatt ttcgcttaat tttaattcgc      1740
     ttaagcgaat atcatcagtg aacagttgtg cagaaggttg cagttgcggc gacgaaacat      1800
     acacgttgaa atttgcggaa ttggcaacag tagcaaggta gctaaacaca cggtttacac      1860
     atccatacga tcacgaattc atgattcatc gaggccagta cactttatag ttttggacaa      1920
     agtaacaatg gcacttcctc ctgaatcgat ttccatcgca ggctggaata taccaccgga      1980
     actttcacta gcggacccct tattcaacgt ttccaacgag gttgacatgg tcataggagc      2040
     tgaacattat ttttcgttta ttcgtaatgg tcgcatcaag ttgagtgaca atcttccact      2100
     gctagtggac agtgaatttg gatggcttgt ctctgggcta gccaatatga ataactctga      2160
     agaagcgcta atctgtaact ccgttacact tgaacatctc gatgcaaaac tggaacgatt      2220
     ttggctggca gaggagattt ctggtcctgc acgcacacgt gaagaacgaa actgtgagga      2280
     ttttttcagg caaacaacaa ctcggaatgc tgagggaaga tatgttgtta gattaccaaa      2340
     acgagagggt ttcgattcat tactgggcga gtcattactg tggcaattcg acgttttcac      2400
     agcttggaag caaaattagc caaggaacct gtactttgag ctcaatacaa tgagttcatg      2460
     gctgagtatt tacggttaga acacatgcat ctcatttcaa cagcgatgaa tgacgaaaag      2520
     gcgttctatc ttccccatca tcacgttgtg aaaaacgaca gctcgacaac gaaaattcgg      2580
     gtggtatttg acgggtcggc caaatcctct actggacatt ctttgaacga tcttcttcaa      2640
     gtgggtccac aacttcaaga cgagctgttg agcattattc ttcgctttcg cacctttgag      2700
     attgcattag tggcggacat cgaaaagatg taccgccagg ttcttgtgca ttcggatgac      2760
     cagcctcttc agcgagtagt gtatcgtttc gactcgaatg aagagttgaa aacatatcaa      2820
     ttggatacag taacctacgg actaggacct tcatcatttt tggcagtacg ttcactgcat      2880
     caactcgcag acgattattc tcccacgcat ccggaaaccg ctaaggtagt aaagaagggg      2940
     ttttatgtag acgattttgt ctatggtgca gagtctgtcg agcaggctat aaaattgcgt      3000
     gaagatatta cgaacttgct tttggaaggt ggatttcaac taaggaaatg gtgctcgaat      3060
     tctaagtctg ttttggaaac aataccccca gatttgttgg atgcaaaact tgagcacacg      3120
     tttgaacacg aaaaaaacag ttaaaacatt gggcgttgta tgggaagtat cttccgattg      3180
     tctgcggttt gcagtcaatt tccctgacca ggaaatgctt ccaacgaaac gcaacatttt      3240
     gtctgtaatc gcgcagcttt atgacccgca aggaataata gctccagtgg tggttaaggc      3300
     caaaattctg atacagcagc tatgggttca aggatttaag tgggatcaag tgattcctgc      3360
     tgattttcaa cgcgtgtggg aggaataccg agttcagcta tcaacgctaa cggaattcag      3420
     aatgcagcgc ttcgcatttg cctctggtta tgagcaagcc gaactccatt ttttctcgga      3480
     tgcttccaac gaagcctacg gtgctgttgc ttacattcgg tcatggagtt caaccgaatc      3540
     tgttcgaatt tcattgttgg cttccaagtc acgagtagct ccactgaaaa caaaaactat      3600
     tccacgatta gagttgtcag cagccctgtt atcggcacgg ttatatgaac gagtgaaaaa      3660
     ggcattggat atgaaatttg atgcggtata ctttcatgtt gattccacag tggtcctaca      3720
     ctgggtgact tcttctccac ataaatggag ggtatatata gccaacagga tttctgaaat      3780
     tcagtcgctt acagaaggcc atcagtggtt acatgtctca ggagtggaaa atcccgctga      3840
     tttggtgtca agaggcatga cagcaggcga gcttgtacgt aataccaagt ggataaatag      3900
     accggaatgg cttcagagac cgagggatat gtggccagag caaccaacaa ttttcatgga      3960
     tcagatgact cttgaggaag aaggtagaaa aatggcgttg ccagtccggc taaaatctcc      4020
     gttctttctt ttcacacgat ggtcatcgta tcgtctattg cttcacgcga ccgcgtatct      4080
     aacgcgtttt accaggaaca gtcaactcat acaggatgat agggttaaac gcattacgga      4140
     atcgcaaatc atcatcagcg agttagaagc agctaaaaag gccttggtca gactgcttca      4200
     atcggaatgt ttttctacgg agattgaaca acttcgcaaa aaaaggtgtg tttccaagag      4260
     ttcttctttg cgattgttga atccttatct tgattctgag gacatagtac gcgttggtgg      4320
     ccggttgcgt cactcacatg aacctttctc taaaagacac ccaatggtta tcccgggtta      4380
     tcacccattc accaaattat taattaagca catccaccaa gacactttcc atggaggaat      4440
     gggcttaaca ttagctgtaa ttcgcgacga gttttggcca cttgctggcc ggagggccgt      4500
     gcgtagtgta ctacgagaat gttatcattg ctatcgtgca aaaccaatcc caattgagca      4560
     accagtgggt caactaccat ccgctagagt gacatcgagt gaagcctttg cttgcacagg      4620
     aatcgactac tgcggtcccc tgtatgtaaa accaccttct agaaaagcag ctccaatcaa      4680
     ggcatacgtt gcaattttca tatgtatggc ttcgaaggcg gtacatatag aattagttgg      4740
     agatctttca acatccacct tcatctctgc tcttcgccgt tttatatcca gaaggggcat      4800
     gccggagcac atttattcag ataatggccg gaactttgta ggcgcttcaa atgagctgcg      4860
     taagctacac gaaatgctgc tggatacaac taaaggagga acagtttcag cctatctgaa      4920
     tatgaaaggc atacactggc acctcatccc tccaagggga ggccgcggtt aaaatcgcca      4980
     agcggcatct catacgtcaa gttgggaata cttctctaag ttatgaagat ctcaccactg      5040
     ttcttacgca gatagaaggg tatatgaatt cccgccctct aactgcgctc aatgatgacc      5100
     ccaatgattt gcgtcctttg accccagctc atttagcaat aaaccgagga ttgtattcct      5160
     tgccggaaca cgatctccgc aatgtaccag aaaatcgctt aaatcgatat caacgtattt      5220
     tggaaaaggc ccaaggattc tggtaccaat ggaagttgga atatctggtc acactcaatc      5280
     aacaggcaaa acgcaatcct gacgcaaaac gtatacaagt tggtcgcatt gtaatcctca      5340
     agaacgactt gttaccccca atgcaatggc cgttagcaag agtattagaa gtacacccag      5400
     gttcggatgg tgttacccga gtggtaactc tgcgtacttc gtcaggaatt cttcagaggg      5460
     ccgttaatat catctgtcct ttgccatggg atttggatga gcagattgga tggccaactt      5520
     ctgaaccagt tccaattccg accataacaa cgaaggatca tgaagctgag tagcggagta      5580
     taaaaactac aaggcatttt gaagcctttt acaaggtaat tggctctcca atattcttaa      5640
     ccctacaaaa aagtgctact ggtcttataa ttttcatatc ctcatcgaac ctggactgga      5700
     catgctgaga ggtgactatc gatagaaccg gattcgtgga tcatattggc gtttttcgga      5760
     tggctgaggc gagccgtaca atcgtcttat cttcgtttcc ttcatcaata tttagttata      5820
     agtactttga actttgagaa tctgaatttt gaaataatta tttcaaggtg gccggtgt        5878
//
ID   BEL-952_AA-LTR repbase;    DNA;    INV; 579 BP.
XX
AC   .
XX
DT   08-MAY-2019 (Rel. 26.08, Created)
DT   08-MAY-2019 (Rel. 26.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat: consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-952_AA-I;
KW   BEL-952_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-579
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-579
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(8), 4542-4542 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 579 BP; 182 A; 97 C; 131 G; 169 T; 0 other;
     tgtacaattc cagaaaatcg aatattcact gtgcttcgaa tataagcaca ctagaacgct        60
     cttgttgacc taggcatcac ctattttgaa tttgcctatc catgtgttgg gaactacaaa       120
     acatttaagt ctgtttgaga gtgatgtgta gattacgtaa gagtaaacaa catagttgta       180
     aaaagatcga ttgtttgaac tttagatata gaacacagcc tataagaaca attaagttgt       240
     gggttacgta atgtttgttt ttccatacaa tacattgttg caatgaaacc caaatgagac       300
     ggacgttttt taattgaacg cagtcgcgtg tgccactata gaaataaagt tttttctacg       360
     ataatatcct tcgcgattat ttgtgcgtta tccgatacat tatgcttagt gttatgctga       420
     agttcgttgg gtgtagtagc tgagcgagtt taccacacga tatacccaga cacgtggctg       480
     aggaacgtgg cgaaggaaca aggacgcgga tgaagaatag gaatcaggaa ccggtaagat       540
     aagggaagga gatgctctgt gacctgctga gatccaaca                              579
//
ID   BEL-95_AA-I repbase;    DNA;    INV; 6961 BP.
XX
AC   supercont1.291;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-95_AA_;
KW   BEL-95_AA-LTR; BEL-95_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6961
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.291; Positions   27500   20540.
XX
CC   'CAGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1549..4401
FT                 /product="BEL-95_AA-I_1p"
FT                 /translation="MAPKKSPLKILTVKLQEIQIELDDIWRFAQNYPGDVT
FT                 ATDVYMRLSRVDELWTKYSETLIELKCHEDYDSDDETFSSQRVVYSDRYYR
FT                 SKSSLTDKAKALQLTPDLDRSTNRANESVLNGVLEHVRLPQINLQKFDGNI
FT                 DEWISFRDLFTSLIHWRADLPEVEKLHYLKGCLQGEPKALIDPLKITQANY
FT                 QIAWDTLTKRYNNSKQLKKRQVQSLFSLPSLSKESIVDLHLLVDGFERIVQ
FT                 TLDQIVQPGDYKDLLLVNILTNRLDPVTRRGWEEFSSTKEQDTLKDLTEFL
FT                 QRRIRILESLPPKVAESKGAQQSQPHFQKQKQSSVKVSYNTTQSSSTKRCV
FT                 ACKEDHFLYQCATFQRMSIADRDAVLKTHALCRNCFKTGHISRECQSKFNC
FT                 RNCKGRHHTLVCFKSEKDSSARVAAAAGNNHPSHQRKSSEIGETSGTSSSQ
FT                 VVNMVATDISVSSAAQQYSSQVLLATAVVVVEDDEGIRFPARALLDSGSES
FT                 NFITEWLSQRLKTQKQKVDIAVRGIGQAGTKVRHKIEAVVRSRVSPFSQSM
FT                 SFLVLPKVTVNLPTATINTDGWSIPPGIKLADPAFFESRRVDMVLGIESFF
FT                 DFFETGKRMTLGNQLPTLNESVFGWVVCGGLSNTSQDLRITCNVSATEKLE
FT                 SLVTRFWSSEEVGSLRVLSPEEKRCEDLFQNTVQRNPDGRYTVTLPKEESA
FT                 VTRLGESKEIATRRLQGSERRLARNANLHKSYHDFMKEYESMGHMERIDVT
FT                 DVDAKRRCFLPHHPVFKEDSTTTKVRVVFDASCATSSGVSLNDMLLTGPVI
FT                 QEDLRSIILRSRTKQIMLVSDVEKMFRQIWVHPDDRHLQCILWRSNPQEDV
FT                 SVYELKTVTYGTKPAPYLATRTLKQLAIDEATTFPLGAQAASEDTYMDDVI
FT                 TGANSVDEACELRQQLSEMTNRGGFWLRKWASNCSKVLEGLTEDTGN"
FT   CDS           5696..6871
FT                 /product="BEL-95_AA-I_2p"
FT                 /translation="MVLPARHELTKMILRYYHEKLLHAGPQLLLANVRLHF
FT                 WPLGGRSVARNIVHRCMKCFRSKPSSIEQFMGELPAPRVTLSRPISQTGVD
FT                 YCGPFYVRPAPRRPVVKMYVALFICLCTKAVHLEIVSDLTTDRFIQALRRF
FT                 TARRGRPKDMYSDNGTNFVGARNVLRELYNLVDSKNHQESVTNCCLEERIQ
FT                 WHFNPPSAPHFGGLWEAAVRSAKSHLLKAIGETPLSPEDLNTLLVQVEACL
FT                 NSRPLTPMSDDPNDLEPLTPAHFLINSSLQSLPDTELEDVPMNRLDRFQLT
FT                 QKIAQDFWKRWRREYLCQLQGRSKRWKPSVAIEIGKLVIIRDENQPPMRWK
FT                 LGRISEVHPGTDGIVRVVTLKTASGNFKRPVEKLCLLPFPESTSTHQYQ"
XX
SQ   Sequence 6961 BP; 1837 A; 1667 C; 1751 G; 1706 T; 0 other;
     tttatggtcc ttcgagccgg atgtggtcag gaccctggaa ggacaggaac tagcttctgg        60
     attgctagta gccgaaaccc gcgtgacatc gcgccatcat tgctggacgg gctcaaggag       120
     acaatcgcca ttccccaggc gaacaattgt caacccgcca tcacactcgc ggacaatcag       180
     attggacctt ttagaagcta cacaattgga ttgcgcgctt catcccactg gcttggcttc       240
     ggttttggac atccgtcgat tgaactgttt ctgctggtga gtggaaccca tttatatgtc       300
     ctgccgaagc ttggacgaaa tattcgttac taacaagtgg tctttcaaat tcctgcatgt       360
     gaaactgcct gtgagtgatg gtgatatatt gtcactgaac ctgaggagtg cgttttttgg       420
     atctaccaag catccacaac ggtggttgat gctggatgcg aaatattccg acctggaatt       480
     cttcgtgaac cctatgtaca tgccttaaac tagaaatcat cccggaattg cctgcatcga       540
     tacttcatcg ccctttggat gtgtctgctt cccgaacagc tgaattagtg acgtggtttt       600
     tctctcagga gcgacaccta ttaccggcaa ggctacctgg tgattgccac ggatcggatc       660
     ggtaattggt actggtcctg cccacctgtt ctaccgttta atggatttcg aggatcctgc       720
     ttgcaaaccc cgacgtaacg attgaatgcc cgttattacg atcgatttgg actaccacct       780
     gtacgaatca tcgctggcta cgtgtgcata cgtgtgagga cgaatgatag aagaggtcgc       840
     gccatcagtt acctgtctag gtgagtcaca aagaacgtat atgtcaccga agcgggacga       900
     ctgaaaatac acgtttttta attaatttga aatcctcttc gacaattcat tgcgacgatt       960
     ccctgagtgc acattttgtg ccgttttaca attttggaac ccgatctggg gggaactgcg      1020
     atagacttgg acatttgcgc tgctgtttgg tttcccaggt aagccattac agtatatgtc      1080
     cagccgaagc aaacattttg gatattacac cctcgtttct cctcttcctg ctaccacgca      1140
     ctatcattga ttgacgttga gccttgctgc taattacctg caagctggaa ctttggatta      1200
     cgattttaca atttcgaatt gggtattgct gatagtttgt gaaggtaaac actatagtat      1260
     atggcctgcc gtggctaggt ctgttggata ctacataagt gccctctccc cttcttccat      1320
     atacactggt ggatcgtgag ccttgctgta ttacgattct cgtgacgtca tcgatcattc      1380
     gttagagact acgtgtttct gtttaacttt tcgttcgatt tggtgctgca tttcactgtg      1440
     ccaggtaaat atacacagta tatgccagcc gaagcgagga atcacgtgga tcactacacc      1500
     ttctacccca ccttactttc gtttcctgcc tgagtgacgt ctaccaacat ggcaccgaag      1560
     aagtcaccgc tgaagatcct caccgtcaag ctacaggaga tccaaatcga gttggacgat      1620
     atttggagat tcgcccaaaa ttaccccgga gatgtcacag ctaccgacgt ctacatgcgc      1680
     ttgtctaggg tggacgagct ctggacgaag tatagcgaga cgttaatcga acttaaatgc      1740
     cacgaagact acgattctga cgacgaaacc ttcagtagcc aacgtgtggt ctacagtgac      1800
     cgctactacc gatcgaagtc atccctcacg gacaaggcga aggcattgca gcttacacca      1860
     gacctggatc gttcaacaaa ccgtgctaat gagtctgtgc tgaatggtgt cctcgaacat      1920
     gtgcggctac cacagatcaa tttgcagaaa tttgacggca acatcgacga gtggattagt      1980
     tttcgggatt tgttcacctc tctgatccac tggagagccg atctaccaga ggtggagaag      2040
     ttacattatt taaaagggtg tcttcagggg gaaccaaagg ctctaatcga tccgttgaag      2100
     attacgcagg ctaattatca aatcgcgtgg gatactctta ctaagcgtta taataacagc      2160
     aagcagctta aaaagaggca ggttcagtcg ttgtttagtt taccttcgct ttccaaggag      2220
     tcgatcgtcg atttgcacct tctagtcgac gggttcgaga gaattgtaca aacactcgat      2280
     caaatagtcc aaccagggga ctacaaggac ctgctactag tgaatattct taccaatcgt      2340
     ttggacccgg tcacccgcag aggatgggaa gagttttcgt ccacaaagga acaggatacc      2400
     ttgaaggatc taacggaatt cctgcaacga aggattcgta ttctcgagtc tcttccaccg      2460
     aaagttgctg agtcaaaggg agctcaacag tcgcagccac acttccagaa gcagaagcaa      2520
     tcatcggtga aggtcagcta caacactacg caatcatcat caacgaagcg atgcgtagct      2580
     tgtaaggaag atcactttct ctaccaatgt gcaacattcc aacggatgtc tatagctgac      2640
     agggatgcag tgctgaaaac ccatgcgcta tgcagaaact gcttcaaaac gggtcacatc      2700
     tccagggaat gccagtccaa gttcaactgc cggaactgca agggtcgtca ccacactctg      2760
     gtgtgtttca agtcggagaa ggatagttcg gcaagggtcg cagcggctgc tgggaacaac      2820
     catccttcac atcaaaggaa gtcctccgaa atcggcgaaa cttcgggaac tagttcatct      2880
     caagtggtca acatggtggc cacggacatc tcggtttcca gtgcggctca acagtattcg      2940
     tcgcaagtct tattagcaac tgcagtcgtc gtcgtggaag acgatgaagg aatacgattc      3000
     cctgcacggg ctctcttaga ctcgggttca gagagcaact tcatcacgga gtggctaagt      3060
     caacgattga agactcaaaa acagaaggtg gacatagcgg tgcgtggaat cggtcaagca      3120
     gggaccaagg tcaggcacaa aatcgaagcg gtggtgcgct cgcgagtttc tccattctcg      3180
     caatcgatga gtttcctcgt tctccccaag gtaaccgtga atcttccaac tgctacaatc      3240
     aacacggatg gttggtcgat acctccaggg atcaaactgg ctgatcccgc tttcttcgag      3300
     tccagacgag tagacatggt gcttggaata gagtcgttct tcgacttttt cgaaactggg      3360
     aaaaggatga cgttaggcaa ccaactgcca acgttgaacg aatcggtttt tggatgggtg      3420
     gtgtgtggag gcttatctaa cacaagtcag gatttgcgca tcacttgcaa cgtttcagca      3480
     acggagaaac tggagtctct ggttacacgg ttctggtcca gtgaagaggt tggatcgctt      3540
     cgagtactct caccggagga aaaacggtgt gaggaccttt tccaaaatac agtccaaagg      3600
     aatccggatg gtagatatac tgttacactc cctaaagaag aaagcgctgt cacacggttg      3660
     ggcgagtcca aggaaatcgc aacccggcgt cttcaaggaa gcgaacgaag attggctcga      3720
     aacgcaaacc tccacaagag ttaccacgat ttcatgaagg aatacgagtc aatgggacat      3780
     atggaaagga tcgatgtgac ggatgtagat gcgaaacggc ggtgttttct acctcatcat      3840
     cctgttttca aagaggacag cactaccacg aaggtcaggg tggtgtttga cgcttcctgc      3900
     gctacgtcat ccggcgtgtc acttaacgat atgttactga ctgggccagt aatacaggag      3960
     gatttaaggt cgatcatttt gcggagtcgt accaagcaga tcatgctcgt ctcagacgtc      4020
     gaaaagatgt tccggcaaat atgggtgcat ccggacgaca gacacctaca gtgcatcttg      4080
     tggcgctcca atccccagga agatgtcagc gtatatgagc tcaagaccgt tacgtacgga      4140
     accaagccgg caccatatct agccacaaga accctcaaac agttggcgat agacgaagca      4200
     acaacttttc ccctaggagc acaggcggca agtgaagata cctacatgga tgatgtcatc      4260
     acgggtgcga attctgtgga cgaagcttgc gaactacggc agcaactaag cgaaatgaca      4320
     aacagaggtg gattctggct cagaaagtgg gcctcaaact gctccaaggt tttggaaggg      4380
     cttactgagg acactggcaa ttagagcggc agacggaatc aatttggatc ctgacccgtc      4440
     tgtgaagacc ctcggactaa catggatgcc gaagagtgat cagttgaagt tcaagttcga      4500
     cgttccagcg gtgctaccaa accagcaatt caccaaaagg gaaatgctat ccatcatagc      4560
     cactctcttc gatcctttag ggctgctcgg agcagcagta gtcactggga aaatcgtgat      4620
     gcaacttcta tggaaatatc gcgatatcga cgatcgtccg ctgggttggg acgacccgat      4680
     accttcgacg gtgggtgagg attggagaaa gtaccttcaa caacttcctc tgctaaacga      4740
     gatcaggatt gatcgctgcg tcatcatacc caacgcagtt tccatggaaa tccactgttt      4800
     ttcggatgcc tcggagaagg cgtatggctg ttgtatttac gtgaagagtg tagatgcagc      4860
     aaggggaatc aaggttcggc ttctttcgtc gtaatcgcga gtggcaccct tgaattgcca      4920
     aacaattcct cgattggagc tatgcggagc tgttctatcg gcggaactct tcgaaaaggt      4980
     tcaagaatcc ctcaaaattc ccttgcagag gtacttctgg acagactcta cttgcgttct      5040
     tcgttggatc caagcttcac caacgaactg gaccacttac gtggccaatc gagtctccaa      5100
     gatccacaca ctaaccaatc cggaaaggtg gagacatgtt cctggcgtgg agaatccggc      5160
     cgatcttatt tcaaggggcg tcttgccgga ggacatcatc cacaatgatt tctggtggaa      5220
     tggaccacga tggctcgcgg aaaatccgga agggtggtca aaactaccgg aatcatggaa      5280
     tgaagaggac gttgagaagg tcgataaaga aaggcgacgt acagcggtcg cttgcaccag      5340
     ttctccagag gcggagttca acagctggta tctaggacga acttcatcgt ataccaaact      5400
     cgtacgaatc acggcgtact gcttacggta cctgaaacaa ctacgtactc ctcgagatca      5460
     gcgaaatcca tcgaagttcc tgacgtctgt ggagttaaga gaagcggaga tcaccctggt      5520
     tcggaatgtt caacaggagt tcttcgttga ggagtggaag gtgctagctg aagggaaacc      5580
     tattccaagg aagtcgccat tgcggtggta taatccattt atatccaagg acctagttat      5640
     tcgagtagga ggaagactgc gacattcgca agaagctgag gacaccaaac acccgatggt      5700
     tttgccagct cgtcatgagc ttaccaagat gatccttcga tattaccacg aaaaactgct      5760
     gcacgctggg ccgcagttac tgctagctaa cgttcgctta catttctggc cgttgggggg      5820
     aagaagtgta gcgcggaata tagtacaccg gtgcatgaaa tgctttcggt ctaaaccatc      5880
     gtccattgag cagtttatgg gagagctgcc agcgccacga gtcaccttgt cgcgacctat      5940
     ttcgcaaacc ggagtggatt attgtggacc gttttatgtt cgaccagcac cccggcgacc      6000
     agtcgtcaag atgtacgttg cgctattcat ctgcctgtgt acaaaggcgg tacacctcga      6060
     gatcgtgtcc gatctgacta ccgatcgatt catccaagcc ctacgtagat tcactgctag      6120
     gagaggaaga ccgaaggaca tgtactcgga caatggtacc aacttcgttg gagcgcgaaa      6180
     cgtgttacgg gaactctaca atttggtgga ttcaaagaat caccaagaaa gcgttacaaa      6240
     ttgctgccta gaagagagga ttcaatggca cttcaatccg cctagcgccc cgcactttgg      6300
     aggcctatgg gaggccgcgg ttcggtctgc gaaatcccac cttctgaagg ctataggaga      6360
     aacaccactc tcgccggagg atttgaacac gctgctcgta caggtggagg cctgtttaaa      6420
     ttcccgaccg ttgacgccca tgtcggacga tccaaatgat ttggaaccgt taacgccggc      6480
     gcatttcttg attaactcaa gccttcagtc cctaccggat acagaattgg aagacgtgcc      6540
     aatgaatcgc ctcgaccgtt ttcaactgac ccagaagatt gcccaagatt tttggaagag      6600
     atggcggcgt gaatacttgt gccaacttca agggagaagc aaacgctgga agccatcggt      6660
     cgcaatcgag attggcaagc tggtcatcat tagggacgag aatcaacccc ccatgcggtg      6720
     gaaactaggt cgtataagcg aggtgcatcc aggcaccgat ggtatcgtga gggtagttac      6780
     gttaaaaaca gcttcaggca acttcaaacg tcctgtggag aaactttgtc ttttgccatt      6840
     tccggagtca acgtctactc atcaatatca atgagcgaaa ccctaccctt tccttccctg      6900
     tcgaagagga gatttcattt tttcttttca gaaattgaag caattcctgg gtgggtgagg      6960
     a                                                                      6961
//
ID   BEL-95_AA-LTR repbase;    DNA;    INV; 717 BP.
XX
AC   supercont1.291;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-95_AA_;
KW   BEL-95_AA-I; BEL-95_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-717
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.291; Positions   20539   19823.
XX
SQ   Sequence 717 BP; 198 A; 164 C; 169 G; 186 T; 0 other;
     tgtagggaag tagtatcgca cccccaagcc cattcgaact acatcactgg ataagacaaa        60
     ccaactgcga tcagcctgaa ccacacaata gctgcagatc agccaggaag gctatagata       120
     gcagtggaaa gagaccagac aagctgatgg taaacaacca ttcgtggcta cctgccttgc       180
     tggatgacca ctgccatagc ttgcgagata gctgatgata gcatgtgaga tcgttggaga       240
     gctgtccatt tgatatcgca gtggtggata tgcttcagga gatgcctctc tcatgttacg       300
     actctcatct ccgaattcga tcatttgaga tccctacagc aggtttagga atgacctttt       360
     ggtgtcgtag aaatcagttt tagattgaac cttccctccg atagcaggcg cgccggttag       420
     aggcctacgc acggccgtat ctgaatgtta cgtgtttaag tttaagaaat cgatgttaga       480
     ataagtccaa taaatgtagt ccgttgtagt tttgtgtgtt ttttagaaca aatatagtgt       540
     tttaattgta ccgcgagttc tttattgcca aggaagaaga atgctcagtg ttcgcttaaa       600
     ggaagccttc taccgcaaag gataattgtt gcccacccaa tccaaccaca tacactggtc       660
     gagtgctgag gagccatccc acccagtcga aggaggtgat tccccggttc cccaaca          717
//
ID   BEL-96_AA-I repbase;    DNA;    INV; 5576 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-96_AA_;
KW   BEL-96_AA-LTR; BEL-96_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5576
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions 2753059 2758634.
XX
CC   Positions [4531-5139] - Integrase core
CC   'ATAGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           261..1601
FT                 /product="BEL-96_AA-I_2p"
FT                 /translation="MVDEKRLKVKEVKRRNAIDVFKRMDIFLASYVPEQHQ
FT                 REIAPRLDRLEKVWEIFEAVQDECEELDEVEESVQKNLELRGQVEALYFRV
FT                 KAGLVAKLPPAPVPAVPGPSSAPITPSPLANVKLPTISLPEFDGDFNTWLT
FT                 FHDTFLSMIHSSTEISQVQKFHYLRAALKGEAASSIQSITITANNYAVAWD
FT                 TLVNRYSNKAILRKKHIRALLKYPKIPNNNVEALHKVVDEFQRHTKVLEQL
FT                 GEPVDHFSSILIELLEDKLDDASLTAWEESIANDAHPTYDKMVDFLLKRAR
FT                 ILETIAINRPQHSVAKPAAHNSASKKPNQPRISTMAAAEIPPKTFPICPAC
FT                 DKHKHSIFDCSVFNGLDTKGRLKVVTDKKALQQLLPQRPFCPQLSLQIFLQ
FT                 TLLQATPFHDPPGTIRDCFRRKFFAQYRRYAAQHFQCYHRSGSSTRTRDCD
FT                 HG"
FT   CDS           1468..5331
FT                 /product="BEL-96_AA-I_1p"
FT                 /translation="MIHPGPFEIASEGNFSPNIDATLPSTSSVTTAVVAAP
FT                 VPEIVTTAKSSSTNVLLTTVVLIIVDVYGQEHIARALLDTGSQPNAISERL
FT                 CQQLHLPRKVVNVPIAGVDSIVTNAKHEVRAEIRSRIANFNESLDFLVLRK
FT                 VTHDSPSMSFSTSQWRLPDNLPLADHDFHTSRKVDMIIGAGHFYSFLRDGK
FT                 FRLHNNGPLLVETVFGWIVSGKFEAISDSNSQPTVTCHAATVTSISDQLER
FT                 FWQVEELYGSNYSIDEQHCEDYYRETVSRDPTGRYIVRMPKHPDHDQMIGN
FT                 SKLTALRRFLLLERRLSKDNTLRAQYHDFIREYESLGHMKPVPLHAKDDPK
FT                 ACYLPHHPVLKDSSSTTKVRVVFDGSAKTSSGHSLNDTLLVGPVVQDDLFS
FT                 LVIRFRKFAIALVADIEKMYRQIVMHEQDRPLQRILWCLDSTLPVQEFELS
FT                 TVTYGLAPSSFLATRTLLQLVEDEGTPFPHAGTAIKKNTYIDDLLAGADSI
FT                 DDTIQLREELSNLLQKGGFRLRKWCSNSLPVLSGLPSELLGTQSSVRFAAG
FT                 EIIKTLGIRWDLEADVFRFDMSPMVKNQPATKRNILSAIAQLFDPLGIIAP
FT                 VVVQAKILMQHLWLLALDWDDEVSPDLQRKWHQFCEQLPHLSNFSIDRFAF
FT                 VHGYCSAELHCFADASEVGYGACMYIRSEDHEGRVHVSLLASKSKVAPLKP
FT                 LSIPRLELCAALLAARLYEKVISALDMKFSRSFFWSDSTIVIQWLKAPPRT
FT                 WQTFVANRVAEIQALSHGSHWNHISGNENPADVISRGMSADDLVNSELWNC
FT                 GPKWLREERSQWPVPDIQEKRFTVEELEMKKNRILTTQILQPNPLFERFSS
FT                 YQTLLGVVGYCFRFCNYARNKTKKCSSKVLSVIELQNAKLALSKLVQREVF
FT                 SEDLQRLEKGQMVSNKSCLRLLNPFIDADGLIRVGGRLRLSNESFNVKHQI
FT                 VIPGFHPFTQLLLNHHHCKLIHGGVTMTLSVVRDEFWPLNGRRAVRSAIRK
FT                 CYRCSRSNPQPIQQPIGQLPVARVTANEAFACTGVDYCGPIFLKPVHRKAA
FT                 ARKSYICVFVCLSTKAVHLELVSDLSTAAFLMALDRFVWRRNKPQHLYSDN
FT                 GTNFVGAKNELHALYTMLQSGPDNDKIAKHLAEDNIQWHMIPPRAPNFGGL
FT                 WEAAVKVAKTHLVRQLGSALLSFEELCTVLIKIEGCMNSRPLLPLSSDPND
FT                 LGALTPALLGEEYDPPSPRSRRSRCAIQPSRSISGSSEVFPTFLASVAKRI
FT                 FEAAELTIQDQSERLPVKRRRPRYRER"
XX
SQ   Sequence 5576 BP; 1381 A; 1457 C; 1310 G; 1428 T; 0 other;
     tctggtgccg tgaccaggat ttctggtcct cccgttcccg aacacgtgca caacataacc        60
     tcctttcgat ttcgctctcc gtcataaatc tctccggagg ctgtagctgg ttcctgatta       120
     taaatataca aggcctctta tagagaggta ccaggtgagt acctctccaa cctgtttacc       180
     cccagttgtg cggtacttcc tggatctttt tgatctttca gcccgtctat cgatcagcga       240
     cgtcggaacg aggctcagca atggtcgacg aaaagcgctt gaaggtcaag gaggttaagc       300
     ggcggaacgc gatcgatgtc ttcaagcgga tggacatatt tctcgccagc tatgttcctg       360
     agcaacacca gcgtgagatt gctcctcgtt tggaccgctt ggaaaaggta tgggagattt       420
     ttgaagccgt gcaggacgaa tgtgaagagc tggatgaagt ggaagaatcc gtgcagaaga       480
     atttggaatt acgtggtcaa gtagaggcat tatactttcg cgttaaagct ggtcttgttg       540
     caaaactgcc accagcacct gttccagcag taccaggacc ttcatcggcg ccgattactc       600
     cgtcgccact cgccaacgtc aagttaccta ccatatcgct ccccgaattc gatggcgatt       660
     tcaatacctg gctgactttc cacgacacct ttttgtcaat gattcattca tcgacagaaa       720
     tttcccaagt gcagaaattt cattatctgc gtgctgctct aaagggtgaa gcggccagtt       780
     cgatccagtc gatcacgatc acagccaaca attacgccgt tgcttgggac acgttggtca       840
     accggtactc caacaaggcc attctacgaa agaaacatat aagggccttg ctcaagtacc       900
     ccaagatccc aaacaacaat gtggaggcgc ttcacaaggt cgtcgatgag tttcagcgcc       960
     acaccaaagt gctagagcag ctaggtgagc cagtggacca tttcagctct attttgatcg      1020
     agttgctgga ggataaattg gatgatgctt cgctcaccgc ttgggaggag tcgattgcca      1080
     atgatgcaca tcccacctat gacaagatgg tcgactttct gctaaaacga gcccgcattt      1140
     tggagacaat cgccataaat cgtccgcagc attctgtcgc caagccggcg gctcataatt      1200
     ccgcatcgaa aaagccaaat caaccccgta taagcactat ggcagcggct gaaatcccac      1260
     cgaagacgtt cccgatttgc ccagcatgtg acaagcacaa gcactcaata ttcgactgct      1320
     ctgtcttcaa cggcttggac accaaaggcc gtttaaaggt ggttaccgac aaaaaagctt      1380
     tgcagcaatt gcttccgcag cgaccatttt gcccgcaact gtcgctccaa atattcctgc      1440
     aaacactgct ccaagcgaca ccattccatg atccacccgg gaccattcga gattgcttcc      1500
     gaaggaaatt tttcgcccaa tatcgacgct acgctgccca gcacttccag tgttaccacc      1560
     gcagtggtag cagcacccgt accagagatt gtgaccacgg ctaaatcatc cagcactaat      1620
     gttctcctca cgaccgtcgt gctgatcatc gttgatgtct acggccaaga gcatatcgct      1680
     cgcgctttgt tggacacagg ctcgcaaccc aatgcaatca gtgagcgatt gtgtcagcag      1740
     cttcatctcc cccgaaaggt tgtcaacgtg ccgattgctg gagtggacag tatcgtcact      1800
     aatgcgaaac acgaagttcg ggcagaaatt cgctctcgaa ttgctaattt caacgaatct      1860
     ctagatttcc ttgttctgcg aaaagtgacc catgattcgc catccatgtc gttttccacg      1920
     tcacaatgga gacttcccga taatcttccg ctagctgatc acgactttca tacttcccga      1980
     aaggtggaca tgattattgg cgccggtcat ttttactcgt tcctgcggga tggaaagttc      2040
     cgcttgcaca acaatggtcc gttactcgtc gaaacggtat ttggttggat agtatccggg      2100
     aaatttgagg ctattagtga tagcaattct caacctacag ttacgtgtca tgcggcgacc      2160
     gtaacttcta taagcgatca gttagaaagg ttttggcaag tggaggagct gtacggatca      2220
     aattactcca tcgacgaaca acactgcgaa gattattacc gagagaccgt ttctcgcgat      2280
     ccaaccggtc ggtacatcgt gcgcatgcca aaacaccccg accacgacca aatgattggt      2340
     aactccaagc tgactgcgct ccgccgtttc ctgctattag agcgaagact ctccaaggat      2400
     aatactctga gggcgcaata ccacgacttc atcagggagt acgaatccct tgggcacatg      2460
     aaaccagttc cgctgcacgc caaggacgat ccgaaggctt gctaccttcc gcaccatccg      2520
     gttctgaaag attccagctc cactacgaag gtgagagtcg tttttgatgg gtctgcgaag      2580
     acgagttcag gacactctct gaacgacacc ttgcttgtcg gacccgtcgt ccaagacgat      2640
     ttgtttagtc tggtcatccg atttcggaaa tttgcgatcg ctttggtggc tgacatcgag      2700
     aagatgtacc gccagattgt gatgcacgaa caagatcgtc cgttgcaaag aattttgtgg      2760
     tgcctcgaca gtacgcttcc ggttcaagag tttgaattga gcaccgttac ttacggtttg      2820
     gctccatctt cgttcctcgc tacacgaacg ctcctgcaac ttgtcgagga cgaaggcacc      2880
     ccgttcccgc atgcaggcac agccatcaag aaaaacactt acatcgacga tctactcgct      2940
     ggagccgaca gtattgatga cacaattcag ctccgtgaag aactctctaa tctgctacaa      3000
     aagggaggtt ttcgtctacg taaatggtgt tcgaattcgc tcccggtcct atccggactt      3060
     ccctctgagc tgcttgggac acaatcgtct gtgaggttcg ctgccggtga aataatcaag      3120
     accttgggaa tacgctggga ccttgaagca gatgtatttc gtttcgatat gtctcccatg      3180
     gtgaagaacc aacctgctac caagcgcaat attttatcag caattgcgca attatttgac      3240
     ccgcttggta tcatcgctcc cgttgtagtg caagccaaaa tactaatgca gcatttgtgg      3300
     ttactggctt tagattggga cgacgaagta tcgcctgact tgcaacgaaa atggcaccaa      3360
     ttctgcgagc aacttccaca tctctccaac ttcagcatcg acagatttgc gtttgttcac      3420
     ggctattgct ctgcggaact gcactgtttt gctgatgcgt cggaagtcgg ttatggcgcc      3480
     tgcatgtaca tccgctccga ggaccatgaa ggacgtgtac atgtgagctt gctcgcttcc      3540
     aaatcgaagg tagcccctct aaaaccgttg agcatccctc gtttggaact gtgtgccgct      3600
     ctgctcgccg cccgcttata tgaaaaggtc atctctgcgt tagatatgaa gttctctagg      3660
     agcttcttct ggtcagactc aacaatcgtt attcagtggt tgaaagcccc cccgcggacg      3720
     tggcagacgt ttgtggctaa tcgtgtcgcc gaaattcagg ctctttctca cggttcacat      3780
     tggaaccata tttctggaaa cgaaaaccct gcggatgtaa tatcacgagg aatgtccgcc      3840
     gatgatctgg tgaacagtga actgtggaat tgtgggccca agtggctacg cgaagaacgg      3900
     tcgcagtggc ccgttccaga tattcaggaa aagcgtttca ctgttgaaga attggagatg      3960
     aaaaagaatc gcatcttgac cacccaaata ctgcagccaa atccgctatt tgaaagattt      4020
     tcgtcatacc aaactcttct tggtgttgtc ggatactgct tccgattctg caactatgct      4080
     cgtaataaaa ctaagaagtg ttccagcaag gtcctctccg tcatcgagtt gcagaatgcc      4140
     aaactagcgc tttcaaagct agttcaacgt gaggttttct ccgaggatct acaacggtta      4200
     gaaaagggac aaatggtttc aaacaaatcc tgccttcgcc tgctgaaccc tttcattgac      4260
     gccgatggat tgattcgcgt cggtggccga ttgaggctgt ccaacgaatc tttcaatgtg      4320
     aaacatcaga ttgtcattcc tggattccac cccttcacgc aactactttt gaaccaccac      4380
     cattgcaagc tcattcatgg aggagttacg atgactttgt cggtcgttcg tgacgagttc      4440
     tggccgctaa atggccggag agcagttcgg agtgccatcc gaaaatgcta caggtgcagc      4500
     agatcgaatc cccaacccat ccagcaaccg attggccagc tacccgttgc ccgtgtcacc      4560
     gccaacgaag cctttgcgtg caccggtgtt gattactgcg gtcccatttt cctcaagcca      4620
     gttcaccgca aggccgctgc tcgcaaatct tacatttgcg tcttcgtttg tttgagtaca      4680
     aaagcggtcc atttggagtt ggtaagtgac ctaagtacgg ctgcattcct aatggcactt      4740
     gaccgtttcg tttggcggcg gaacaagcct cagcatttgt actcagacaa cggtacgaat      4800
     tttgttgggg cgaaaaatga actgcacgca ctttacacta tgcttcaatc cggtcccgac      4860
     aacgataaga tcgccaagca tctcgccgaa gacaacatcc aatggcacat gatacctcct      4920
     cgcgctccta attttggtgg cctctgggaa gcggcagtca aggttgccaa gactcacctc      4980
     gtgcgtcagc ttggctctgc tctgctgtct tttgaagaac tgtgtacggt gctcatcaaa      5040
     attgaaggat gcatgaactc tcgaccgctg ttgccgctat cgagtgaccc gaatgatcta      5100
     ggtgctctta ccccagcact tcttggtgaa gaatatgatc cgccctctcc ccgaagtcga      5160
     cgttcgagat gtgccattca accgtctcgg tcaatatcag gctcttcaga agttttccca      5220
     acttttttgg catcggtggc gaaacgaata tttgaagcag ctgaactcac tatacaggac      5280
     caatccgaaa ggctaccagt taaacgtcgg agacctcgtt atcgtgaaag atgaatgcta      5340
     tccccctgcc cgctggccgt tggcccgcat cattgaactt catccaggac ccgatggagt      5400
     gacacgggtt gtgagtcttc gtacgccgtc cggagttctt aagagagccg tttgcaaaat      5460
     ttgcccaatg gaatgtgcta tggaagagtg agatgtacat tatattttca tggacaatat      5520
     gtttgagtta cgtttagttt aatttcgcaa atagtttgca aaggtggccg gtatta          5576
//
ID   BEL-96_AA-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-96_AA_;
KW   BEL-96_AA-I; BEL-96_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-441
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions 2752618 2753058.
XX
SQ   Sequence 441 BP; 115 A; 122 C; 79 G; 125 T; 0 other;
     tgttagatat taaattgaac taccactgta tctgaaatct taccccgact gaaacatttc        60
     agcctcgcac ctctttctat tattcactta tgccattgaa atacagtttt agtttagaac       120
     agagtactga tcacatgtgc aaagtctccg tggtttatcc gaaaatcgtc atttttgcca       180
     gcaattctcc catcccgaag attaccacgg ccgaatggaa ttctcgttgt cggtttatgt       240
     gatagtgcca aaatacgtcg atctgctaga ttgaagcgat attctcccaa ccgtttgcct       300
     ttccgcgacc cattgtcgct gaggttgatg tgaacctgta tcgagcaaac ggccgcatca       360
     caccccgtaa gaacccgttc ccgtcctcgc tgtggccccc aaaacatcaa agtcaattaa       420
     ccacccgtcc agtgcccatc a                                                 441
//
ID   BEL-97_AA-I repbase;    DNA;    INV; 6199 BP.
XX
AC   AAGE02034155;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-97_AA_;
KW   BEL-97_AA-LTR; BEL-97_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02034155; Positions    6448     250.
XX
CC   Positions [5240-5758] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..3670
FT                 /product="BEL-97_AA-I_1p"
FT                 /translation="MATVDPPHASQDHDCGACNQPNDADPQMVQCDACQVW
FT                 FHLKCVGETPGVENRSFNCRTCQPPTDINKKSKKTRSQKGAGENRLKVPMV
FT                 ATSGVTPKKHPEVPNVATNKASTIKSISSISRSRALTLQRKIETEQLLAEM
FT                 KLAEAEKRLEEDRIMQERQRALREEKNRLQEELLRKMQELDEIVDEEKGSD
FT                 YTSTTGIRKAKEWLASQRQQDDNSVSRSVPPFLPSKKSERSSHHTEERKEL
FT                 NSPDASDHEAFEDQEEQVPENAFRRLSIERFQAIQNPEGVGPTANQIAARQ
FT                 VWPKKLPIFSGEPEEWPIFYSSYEGANATCGFSDVENIIRLRECLRGPARE
FT                 AVVSKLMFPRSVPSIIETLRRLYGRPELMVKNLLGKVRRLEAPKPERLDSL
FT                 INFGMTVQQLSDHLIAADLQSHLANPTLMEELVDKLPAAYKLEWVRYKRAY
FT                 AMPTLKEFAKFMDVLVADASEVTVLTQPKIEKIKHEKGKHDQKGHVYAHND
FT                 DEVDKFPSRIPCPICNGTDHRVRNCEKFQRMKLESRLAAVERCNLCEVCLF
FT                 NHSAKCRSRVRCNIGNCRERHNPLLHQAEKRTTTASRVVDAECNAHGPVTG
FT                 SVLFKVVPVTLYNGDRRIDTFAFVDEGSSRTLIESSLARSLGLSGETVPLK
FT                 LIWTSNVTRTERTSKLVDVLISARGQNQRFSLKGAHTVGELNLPKQSLSME
FT                 ELTRRFNHLRDLPALSYLDAEPKILIGLRNLEIFTPLETRIGQPGDPVAVR
FT                 SALGWVIYGPCRSDKNENDFIGVHDCSCKTNEALNELIRQQFILEEAVVCV
FT                 TPLPESADDKRARHILDNTTRLAGDRYETGLLWKTDEVRFPNNWPLAVKRL
FT                 KSLEVKLARDPDLRANVHQQIRDYVEKQYAHKATDHELASADPNRVWYLPL
FT                 NVVTNPRKPEKKRLVWDAAAQVDGVSLNSQLLKGPDLLNSLPSVICVFRER
FT                 PIAFGGDVKEMFHQVRIIPKDRHSQRFVFRFDSSQPPEIYVMDVATFGATC
FT                 SPCSVQHVMRKNALEYATVFPDAVTAIINKTYMDDYVDSANTTDEAIIRAK
FT                 QVRDIHARGGFEMRNWVSNSHDVLQALGEGKNQEPVVLGGITQ"
FT   CDS           4130..5758
FT                 /product="BEL-97_AA-I_2p"
FT                 /translation="MAKSKVAPLQHQSIPRLELQAAVMGARMLKCAIECHT
FT                 LAIGRCFLWTDSSTVLSWIRSDNRKYKQYVAHRVGEILSHSQITDWRWVPT
FT                 KENVADCLTKWGRHTDPENMGLWLNGPAFLYGPEETWPQQRKIALNVPDEL
FT                 RPCYLLHHIAIPQELIKVENISKWKVLLRTMAMVCRFINNCRLRIKGLPVE
FT                 TIKATNLQLKCLQRSIPVISVPLQKNEYERAESILWRIAQADTFPDEVKVL
FT                 MKNRDSPPENLVSIERTSPLYKLSPFADEFGVLRVDGRTANAGYASFDSRF
FT                 PIILPKDHVVTFRLINHYHCQYGHANKETIVNEVRQRFFIPSLRSVVNKVM
FT                 RACQRCKIKKCQPQSPRMAPLPVQRLTPYVRPFCYVGVDYLGPLEVTVGRH
FT                 KEKRYVVVFTCLVVRAVHLEMAYDLSSESCVMAIRRFVRKRGPPVQIFSDN
FT                 GTNFVGAKCELAQQIRQINDKCANTFTDAKTKWTFNPPAGPHMEGVWERMV
FT                 RSVKQSMRALDDGRKLNDEILLTVLAETEWFINSRPLTYMPQECGND"
XX
SQ   Sequence 6199 BP; 1835 A; 1354 C; 1524 G; 1486 T; 0 other;
     ctgatatgaa tttaattaaa ttggtttatt tgcccagaaa ctgtgaatta tactgtgcaa        60
     ttgtattcgg gttagctgta gtcctctgaa ataatagagc tcgataatag gtaacattaa       120
     tctatatctt attgaattag cccttaatta acgtgctttt ctctaaaagg gacaatcaat       180
     ctttgtacgg aattgttcag tataggccgt aaattggaac aatacgagaa gactatcgta       240
     agttaatgac tatcaatcaa ctatatttaa ataataaaga ttatcgtttt agctttaagc       300
     ctcgtaagat aaaaaggctg tcaaggttct tctacatccg aacaatctta aaggatatca       360
     ctcgactctg atggctacag tagacccacc ccatgccagt caggaccacg attgcggggc       420
     ttgcaatcaa cccaatgatg ctgacccgca gatggtccaa tgcgatgcat gccaagtttg       480
     gtttcatcta aagtgtgtcg gtgagactcc cggcgttgag aacagatcgt tcaattgtcg       540
     cacgtgtcaa ccgcccaccg atatcaacaa gaaatcgaag aaaaccagat cgcagaaggg       600
     tgctggtgaa aatcgactta aggtccccat ggtggctacg tctggagtga ccccgaaaaa       660
     gcacccggag gttcctaacg ttgctacgaa caaagctagt acgatcaaat ctatttcgtc       720
     gatatcgcgc tcccgtgctc taactctaca aagaaagata gagacagagc aactcttggc       780
     ggagatgaaa ctggctgaag ctgaaaagcg gctcgaggaa gatcgtatca tgcaagaaag       840
     acagcgagct ctgcgagaag aaaaaaatcg attgcaagag gaattattac ggaaaatgca       900
     agaacttgac gagatcgttg atgaggaaaa gggctccgac tacaccagta ccaccggaat       960
     acgtaaggct aaagaatggc tagcgagcca acgacagcaa gacgataaca gtgtgagtcg      1020
     ttcagtacca ccatttcttc cttctaagaa gtcggaacgc agctcccatc atacggagga      1080
     gcgcaaagaa ttgaactcac cagatgcgtc agatcatgaa gcattcgagg atcaagaaga      1140
     acaggtacca gaaaacgcat tccggaggct gtctatagag aggtttcaag cgattcagaa      1200
     tccggaaggt gtaggaccta ctgctaatca aattgccgct cggcaggttt ggccaaagaa      1260
     attgccgata ttttctggcg agcctgagga gtggccaatc ttctatagca gctacgaagg      1320
     ggcaaacgcg acttgtggtt tctcagatgt agagaatatc attcgccttc gagagtgtct      1380
     tcgaggacca gcaagagaag cagtcgtctc gaagctcatg tttcctagga gtgtgccatc      1440
     gatcatcgag acattacgac gattgtatgg acgacctgag ctgatggtaa aaaacttgct      1500
     aggcaaggtt cgtcgcttgg aagcacctaa acctgaaagg ctggattctc tgataaactt      1560
     tggcatgacg gtgcaacagt tgagtgacca cttgatagca gctgaccttc agagccacct      1620
     tgccaatcca acgctgatgg aagagctagt tgataaacta ccagcggcgt ataaattgga      1680
     atgggttcga tataaacggg catacgcaat gccgaccttg aaggaatttg ccaaatttat      1740
     ggatgttttg gtggccgatg cgagcgaagt aactgtcttg acacaaccga agatcgaaaa      1800
     aatcaagcac gaaaaaggga agcacgatca gaaagggcac gtctatgctc acaacgacga      1860
     tgaagtagac aaatttcctt caaggatacc gtgccctatc tgcaatggaa cggatcatag      1920
     ggtgcgaaac tgcgaaaagt tccagcgaat gaagctggaa tctcgtcttg cggcagtaga      1980
     gaggtgtaat ctctgcgagg tatgtttgtt caaccacagt gcaaagtgtc gatcaagagt      2040
     acgttgcaac atcggaaatt gtcgagagcg tcataatccg ctactccatc aagctgaaaa      2100
     aagaacaaca accgcttcga gagtcgttga tgcagaatgt aatgcccatg gtccagtgac      2160
     tggatcggtc ctattcaaag tagttccagt cactctgtac aatggagatc gaagaattga      2220
     cacgttcgcc tttgtagacg aagggtcttc tagaacgttg attgaatcga gtttggcaag      2280
     gagtcttggg ctttcaggtg aaacagtacc gttaaagtta atttggacct cgaacgttac      2340
     gaggacagag agaacttcaa aactagtgga tgttttgata tcagcgcggg gacagaatca      2400
     acggtttagc ctaaaaggcg ctcacaccgt tggtgaattg aatctaccca agcagagtct      2460
     gtcgatggaa gaattaacta gacggtttaa tcacctgcgt gacctacctg ctctctcata      2520
     ccttgacgcc gaaccgaaaa ttctaattgg cttacgaaat ttggaaatat ttacaccgct      2580
     tgaaactcga attggtcaac caggcgaccc agtggcggta agaagcgccc tcggctgggt      2640
     gatttatggt ccatgcagga gcgataaaaa tgaaaatgat ttcataggcg ttcacgattg      2700
     tagctgcaaa acgaatgagg cattgaatga attgatacgc caacagttca ttttggaaga      2760
     agcggtagtt tgtgttacgc cattgccaga atctgcagac gacaaacgcg cccgtcacat      2820
     tcttgataac accactcgac ttgccggtga tagatatgag acgggactcc tctggaaaac      2880
     tgatgaggtg cgtttcccga acaattggcc tttggcagta aagagattga aaagtctaga      2940
     agtaaagctt gccagagatc ctgatctacg cgccaatgtg catcaacaaa ttagagatta      3000
     cgttgaaaag cagtacgccc acaaggccac cgaccacgag ttagcgagcg ctgatccgaa      3060
     tcgtgtatgg tatttgcctc tcaacgtggt gacaaatcct agaaaacctg agaagaaaag      3120
     acttgtgtgg gacgcggcgg cacaagtgga tggtgtgtct ctaaattctc agctcttaaa      3180
     aggaccagac ctgttgaatt cactgccatc cgttatttgc gtcttcagag agagaccgat      3240
     tgcctttgga ggcgacgtta aagaaatgtt ccatcaggta cggataatcc cgaaggacag      3300
     acactctcag cgattcgtct tcagattcga ttctagtcag ccaccggaga tatatgttat      3360
     ggacgttgcg acgtttgggg ccacatgttc gccctgctcc gtacaacatg tcatgcgtaa      3420
     aaatgcactt gaatacgcaa cggtgtttcc cgatgctgta acagcaataa ttaacaaaac      3480
     ctacatggac gattacgtcg atagtgccaa cactaccgac gaagctatca ttagagcaaa      3540
     gcaggtacga gacatacatg cacgtggcgg atttgagatg agaaactggg tgagtaacag      3600
     tcacgacgtg ttacaagcgc tgggagaagg caagaatcag gaaccggttg tgcttggcgg      3660
     cattacgcaa tagaaatggg agcgtgttct aggattgatt tgggatcctc agggtgattt      3720
     cttctccttc tcaactcgat tccatggaga cttggaacca tatgtatctg gaaaccgtcg      3780
     tccaacaaaa cgaattgttg cccgctgcat aatgagcttg tttaatccaa tcggcttgct      3840
     agctccattt tcgatacatg gaaaaatgct cattcagaat ctttggagaa gtggcactat      3900
     gtgggatcag gatgttttag atgaagaatt tggaaaatgg agacgctgga tacaactact      3960
     ccccggaatc ggacgtttga gaatccctcg tccttacttt ggagatgcaa gcccaaataa      4020
     gttcaactcg ttccaattgc acatatttac cgatgcgagc gagttggcta tgggttgtgc      4080
     ggcgtatttt tgagcagttg atgaacaagg tgtacgctgc gcattgataa tggcgaagag      4140
     caaagtcgct cccttacagc accaatcaat accgcgactg gaattacagg ctgcggttat      4200
     gggggcaaga atgctcaagt gtgcgataga atgtcacacc ctcgcaattg gccgctgttt      4260
     tctatggacc gattcgagca ctgtgctatc gtggatacgt tcggacaatc gaaaatacaa      4320
     acaatatgtt gcgcatagag taggagaaat cctttcgcat tcgcagataa ccgactggcg      4380
     ttgggtgccc acaaaggaaa acgtagcgga ttgtctaacc aaatggggaa gacacactga      4440
     ccccgaaaac atgggtttgt ggttaaatgg acctgcgttc ttatacggcc cagaagaaac      4500
     atggcctcag caacgaaaga tagcactgaa tgtcccggat gaactacgac cttgctatct      4560
     actccaccac atcgcaattc cgcaggaact aataaaagtg gaaaatattt caaaatggaa      4620
     agtattgctg cgaactatgg ctatggtgtg ccgtttcatc aacaactgtc ggctgcgaat      4680
     taagggccta ccagttgaaa ccatcaaagc aacgaatctt cagctcaagt gtctgcaaag      4740
     atccattcca gttatcagcg tacccctcca gaaaaacgag tacgaaagag ctgaatccat      4800
     tctgtggcgc atcgcgcaag cagatacctt cccggacgaa gtaaaggtac tcatgaagaa      4860
     ccgtgattcc ccgcctgaga atttggtgag tattgaacgc acgagccctc tgtacaaatt      4920
     atctccattt gcggatgaat tcggagtctt acgagttgac ggtaggactg ctaacgcagg      4980
     ctacgcttcc ttcgactcta ggtttcctat aatccttccg aaagaccatg tggttacatt      5040
     tcggcttatt aatcactacc actgccaata cgggcatgca aataaagaaa caatcgttaa      5100
     tgaagttcgc caacgattct tcataccaag tttaagatcg gttgtgaaca aagtaatgag      5160
     ggcctgtcag cgatgtaaaa ttaaaaaatg ccaaccgcaa tctccacgaa tggccccgtt      5220
     accggtacag cgactgactc catacgtaag accattctgc tacgtaggtg tggactacct      5280
     tggccctttg gaagtcaccg ttggacgtca caaggaaaag cgatacgtcg tcgtctttac      5340
     ttgccttgtg gttagagccg tccatttaga aatggcctat gacttgtcca gtgagtcatg      5400
     tgtaatggca attcgacgtt tcgtccgcaa gaggggacct ccagtacaaa ttttctccga      5460
     caacggcacg aattttgtcg gggccaaatg tgaattggct cagcagatta gacagatcaa      5520
     cgacaaatgc gctaacacgt tcacagatgc caagaccaag tggacgttca accctcccgc      5580
     tggtccacat atggaagggg tgtgggagcg tatggtgcgc agcgtaaagc aatccatgag      5640
     agctctcgat gatggccgta agctcaacga tgaaatcctg ttaacagttc tagcagaaac      5700
     agagtggttt atcaattctc gcccgcttac atacatgcct caggaatgtg gaaatgatta      5760
     ggctctgact ccgaaccact ttattcttgg gaactcatct ggttcgcacg aaccgattat      5820
     aaatcccact agtcttgcag caactttacg cagcagttat cagagaagtc aatacttatc      5880
     tgacgcactg tggaagagat ggataagaga atacttccct accatcaatc gtagatccaa      5940
     atggttcgac gacgtacgtt ctgtaaaagt gggagatttg gtctacgttg cggatggaga      6000
     tcgcagaaca tggatacgag acaaagtaga agaagttatc caggggcgtg atggaagagt      6060
     aaggcaggcc atcgtgaaga cggcaaatgg aaatggaaga cttaaacgtc ccgcggtcaa      6120
     actggcagtg atggaggttg gagatagtgt atccggcgac cttcctaatg agcagcatcc      6180
     ggatccacgg ggcggggga                                                   6199
//
ID   BEL-97_AA-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   AAGE02034155;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-97_AA_;
KW   BEL-97_AA-I; BEL-97_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02034155; Positions     249      28.
XX
SQ   Sequence 222 BP; 73 A; 36 C; 54 G; 59 T; 0 other;
     tgttccggca tcactggact acgagcaggc agtgaactcg ccgatgaatg cgaactggct        60
     gtcaagccac cacgacatag cgtataggta gcgaagtatg aaacatggtg agatgatttt       120
     ctgaaacact gaatgttaac gttgaattat taatttgaga aaaagattag tttgctgatc       180
     gagagaagaa actttgtaaa agtaagttcc gtgttaatat ca                          222
//
ID   BEL-98_AA-I repbase;    DNA;    INV; 5877 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-98_AA_;
KW   BEL-98_AA-LTR; BEL-98_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5877
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 871-871 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4560-5132] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           255..5546
FT                 /product="BEL-98_AA-I_1p"
FT                 /translation="MSSAERRIRYLKLRQRSISASFTLIKGFVDRYDEEND
FT                 AAEVPVRLESLVELWNDYTKVQAELESLDEASIEEQLKQRMEMESHYYRVK
FT                 GFLLNKSPIAPPPSPTTSTNAQAHSPTTHVRLPDVKLPVFNGTLEHWLNFH
FT                 DLYMSLVHSSQDLSSIQKFYYLRSSLSGDALKLIQTIPISATNYPVAWNLL
FT                 VEHFQNTGRLKASYVDALFEFPTLKRESAGELHTLVERFEANVRILQQLGE
FT                 QTNTWDILLVRMLSSRLDQTTRRDWEEHSSTLQDVSFKELTTFIQRRVNVL
FT                 QSINHKPSDTCTPSSAKKPPTPRSFASHGASQLNARKCILCSEQHPLYMCP
FT                 TFSKMTVEDKEKEIRRHQLCRNCLRKGHMSRECSSNSTCRRCKGRHHTQLC
FT                 NHESSNESSQKTSDVTSKPTQFQSASEQPTTSASATHMHPKGYASTGRNHA
FT                 KVLLATAVVHVVDDNGTFHVARALLDSGSECCFATEPFSQLLKVQRKRVSI
FT                 PIAGIGHSTTQARTKFTSTIRSRISDFSASAEFLVLPKVTVNLPSTSLDIS
FT                 SWEIPSGVKLADPSFCTSNTVDLVLGAEIFFDLFKVPGRIPLGDDLPMLIN
FT                 STLGWVVSGRSNHCQPSTTITANVATMADLHQLMERFWTIEEDNSSPCHSV
FT                 EEAACEAHFRRTVSRTPEGRYVVRLPLKDDVISNLGDNRRTAIRRFQMVES
FT                 RLQRNLHLGQQYSDFMKEYYELGHMQRVQDTGEITTQTYHLPHHAVVREES
FT                 TTTKVRVVFDASCKTSSGTSLNDAMMIGPIVQDDLRSIVMRARIHPVMLIA
FT                 DIKQMYRQVLVDERDTPLQRIVWRASRDEELETYELKTVTYGTASAPFLAT
FT                 RVLQQLADDEQHDFPEAATVLRKDFYVDDLFSGSNSIAETIVLRKQLHSLL
FT                 ARGGFELRKWASNEPAVLDDISDDNKALQQSVDLDRDQLIKTLGLHWEPNA
FT                 DVLRYNVKLPQSIPNATLTKRLALSYIAQLFDPLGLVGPVVTTAKLFMQAL
FT                 WTLKNSDDNIWGWDEELPATARDYWQSYHEQLPLLNQLKIDRFVLCPDATT
FT                 LQLHFFSDASESAYGACAYVRSENESRQVKVALLTSKSKVAPLKKQSIPRL
FT                 ELCGALLAAQLFEKVTSSLSMRPETYFWVDSTTVLSWLNCSPSTWTTFVAN
FT                 RVSKIQLSTTNCIWNHVAGEQNPADCLSRGTSAELLLSHDLWWHGPEWLHR
FT                 DQTEWPSVHQTTSNPQSVCEMRKPPATIVSATIEDSFINCYVNKFSNYQRM
FT                 LRVTAYCKRFLQNCRLSNQHRPASHVVTTEEKKEAELTLIRLVQEQAYPNE
FT                 WKCLQQGKPVAVKSRLKWFHPILDSENLIRIGGRLRRSQQAYDSKHQIILP
FT                 STSPLSALLVRSLHEQHLHAAPQLLLGILRLRYWITGARDLARKIFHKCTI
FT                 CFRARPKRIEQFMSELPTARITASRPFSSTGIDYWGPILIQPAHRRASPRK
FT                 AFVAVFVCFCTKAVHLELVADLTTAKFLQALRRFVSRRGLCSDIYSDNGRN
FT                 FVGAANELRHLIRSKEHREQIAQECAHNNIRWHFNPPKASHFGGLWEAAIQ
FT                 SAQKHFIRVLGAQTLAYDDMETLLSQIECCLNSRPLVPISDDPSDLEPLTP
FT                 GHFLVGSALKAVPDVDVTSIPFNRLKKWQQTQKLYQQIWERWHRDYLVTLQ
FT                 PRAKWCNPPVPLQRNQLVVLLDENLPPMRWPMARIQDLHPGPDGVVRVVTV
FT                 QTSTGIFTRPVAKICLLPIAPIMPPAENTSQTTTNSAPKPASNP"
XX
SQ   Sequence 5877 BP; 1579 A; 1659 C; 1284 G; 1355 T; 0 other;
     tggtccttcg agccggatga acgtcgaact ccgttcatca acgatccaac ccgccagagt        60
     cgccatcttg cttctggaac cttctggaga gttcaaccac gctgtacatc cctttagggc       120
     catcttggac acagtcatcc cgccattgca gcatcaataa aatacaaggc atttaattgc       180
     ctataacagg taattagctt tcctatcatc tataccctac tcgttcgagc tacgcggtct       240
     tttgcttgca gaccatgtct tcagccgaac gccgcatccg ctatctcaag ctgcgccagc       300
     gtagcatttc tgcatcattc accctaatca aaggcttcgt ggatcgttat gacgaggaaa       360
     acgatgccgc ggaggttcca gttcgcctgg agagccttgt ggaactatgg aacgactaca       420
     ccaaggttca ggccgaattg gagtcgttag acgaagcttc gatcgaagag caactcaagc       480
     agcggatgga gatggaatcc cattattata gggtcaaggg gttcttgctg aataaatcac       540
     ccatcgctcc acccccttcg cctactacgt ctacaaacgc tcaagcccat tctcccacca       600
     cgcacgtgcg attgccagat gtgaagctac ccgttttcaa tggaaccctg gagcattggc       660
     tcaacttcca tgacctttac atgtcgctag ttcactcttc gcaagaccta tccagtatac       720
     aaaagtttta ttatctccgt tcctccctct ccggagatgc tctgaaactg attcagacta       780
     tacccataag cgctacaaac tatcctgttg catggaatct gctggttgag cattttcaga       840
     acactggtcg tctgaaagct tcgtatgttg atgcactttt cgaatttccc accctcaaac       900
     gagaatcagc tggggaatta cacactctcg tagaacggtt cgaggccaac gtccgaattc       960
     ttcagcagtt gggagagcaa accaatacgt gggacattct tttggtccgt atgctaagca      1020
     gtcgcctcga tcaaaccacc agaagggact gggaggaaca ttcgtccact cttcaagatg      1080
     tttcgttcaa ggaacttacc acattcattc aacgaagggt taacgtgctg caaagcatta      1140
     accacaagcc gtccgacacc tgtacgccat cgtctgcaaa gaaaccaccc accccacgtt      1200
     cattcgctag ccatggagca tctcaactca atgctaggaa atgcattctt tgttccgagc      1260
     aacatccact gtacatgtgc cctacctttt ccaaaatgac cgtcgaggac aaggaaaagg      1320
     agatacgccg tcatcaactc tgcagaaatt gcctccgcaa gggacacatg agtagggaat      1380
     gttcatccaa cagtacctgt cgtcgatgta aaggccgtca tcacactcaa ttatgcaacc      1440
     acgaatcgtc gaatgaatca tcccagaaga caagtgacgt cacatcgaaa ccaacacaat      1500
     ttcaatctgc tagcgaacag cctaccacct cagcatctgc aacacacatg cacccgaaag      1560
     gctatgcttc aactggacga aaccatgcga aagtactgtt agccacagcg gtcgtacacg      1620
     tagtcgacga caatggaacc tttcacgtcg ctagagcgct tctagactcg ggaagcgaat      1680
     gctgttttgc caccgaacca ttctctcaac ttttgaaggt acaacgcaaa agggtatcca      1740
     ttccgattgc tggcattggg cattctacta cgcaagctag gaccaaattc acttccacca      1800
     ttcggtcccg aatcagcgac ttttctgcct ccgcagagtt ccttgtactc cccaaggtta      1860
     cggtcaactt accgtcaacg tctttggaca tttcatcctg ggaaatcccg tccggggtta      1920
     aactggctga cccatcgttc tgcacctcca acaccgtcga tctcgtcctt ggcgcagaaa      1980
     tcttttttga tctctttaag gttcctggca gaattcctct cggagacgac ttacccatgc      2040
     tcataaattc gactcttggt tgggtagtct caggtcgttc caaccattgt caaccatcaa      2100
     ctacaatcac ggccaacgtt gcaaccatgg ccgatttaca ccagctgatg gaacgattct      2160
     ggacaatcga agaagacaac tcatctcctt gtcattcggt ggaagaagcg gcatgtgaag      2220
     ctcacttccg tcggacagtc tcgcgcacac cagaaggtag atatgtagtg cgcctaccac      2280
     tgaaggatga cgtcatctca aacctcggcg acaaccgtcg caccgctatc cgtcgttttc      2340
     aaatggttga atcacgcctg cagcgaaatc ttcatctggg ccaacagtac agcgacttca      2400
     tgaaggagta ctacgagcta ggccacatgc aacgagtgca ggacaccgga gagattacca      2460
     cccaaacgta tcacctccca caccatgccg tggtacgtga agagagcaca acgacaaaag      2520
     tgcgcgtcgt cttcgacgcg tcttgtaaaa cgagcagtgg aacatctcta aacgacgcaa      2580
     tgatgattgg gccaatcgta caagacgacc tgcgatccat cgttatgcgt gctagaattc      2640
     atcccgtgat gctgattgcg gacatcaagc agatgtaccg ccaagtactg gtcgacgagc      2700
     gtgacacgcc tcttcaacgc attgtgtggc gagcatcacg tgacgaagaa cttgaaacct      2760
     acgaactcaa gacagttacc tacggaaccg caagtgcccc gtttctggca acgagagtct      2820
     tgcagcaact agctgatgac gaacagcacg atttcccgga ggcagccaca gtattacgca      2880
     aggactttta tgtggatgac ctcttctctg gcagcaacag catagccgaa acaatcgtcc      2940
     ttcgaaagca attgcactca ttgctagcac gaggtggctt tgaattacgt aagtgggctt      3000
     caaacgaacc cgctgtcctg gacgacatct ccgacgacaa caaggctcta cagcaatcag      3060
     tagatttgga tcgcgaccag ctcatcaaaa ctctcggtct tcattgggag ccaaacgccg      3120
     acgttttgcg gtacaacgtg aagctgccgc agtcaatccc aaatgcaaca ctcaccaaac      3180
     gtctcgccct ctcatacatc gcccaattat tcgacccact tggtttggtg ggacccgtcg      3240
     ttacaacagc aaaacttttt atgcaggcat tgtggaccct gaagaacagc gacgacaaca      3300
     tatggggctg ggatgaggag cttcctgcaa cggcacggga ctattggcag tcctaccatg      3360
     agcagcttcc actgctaaac cagctcaaaa tcgaccgttt tgtactgtgc cccgatgcaa      3420
     caacacttca gttgcacttc ttttcggatg catcggagag tgcatacggt gcatgtgcat      3480
     atgtgcgatc cgaaaatgaa tcgcgacagg tcaaagtcgc actactgaca tcgaagtcga      3540
     aagttgcacc tttgaagaag caaagcatac cacgtttgga gctttgcggt gccctcctgg      3600
     cggcacaact gtttgaaaag gtgacctcct ccctatctat gcgcccagaa acctacttct      3660
     gggtcgactc gactactgtc cttagttggc taaactgttc accgtctact tggacgacct      3720
     tcgtggcgaa cagggtgtca aaaatacagc tctcgactac aaactgcatc tggaaccacg      3780
     tagcaggtga acaaaatcca gcagattgtc tctccagagg aacatcagct gaactacttc      3840
     tctcccacga tctatggtgg cacggtcccg agtggctaca ccgagaccaa acggaatggc      3900
     cgagtgtcca tcaaaccacc tcaaatccac agagcgtatg cgaaatgcgc aaaccaccag      3960
     caacgatcgt atctgcaacg atagaagatt ctttcattaa ctgctacgtc aataaattct      4020
     ccaattatca acgcatgctt agggtgaccg cctactgtaa acgttttctg caaaactgtc      4080
     ggctcagtaa tcaacatcga ccagcgtcgc acgtcgttac cactgaggag aaaaaagaag      4140
     ctgaattgac attgatccga ttagtgcagg aacaagccta tcctaacgaa tggaaatgtt      4200
     tgcaacaagg aaaacctgta gctgtgaagt ctcgcctaaa atggttccac cctattctcg      4260
     attcggaaaa tctcatccgc attggtggtc gtttgcgccg gtcgcagcaa gcctacgatt      4320
     ccaagcacca aatcatcctt ccatcaactt ctccgttatc tgccctgctt gttcgaagcc      4380
     ttcatgagca gcatctgcac gctgcacccc aattgctgct tggcatactc cgcctccgat      4440
     actggatcac gggggccagg gacctggccc ggaaaatctt ccacaaatgt accatctgct      4500
     tcagagcacg accgaaacgc atcgagcaat tcatgtcgga actgccaaca gcccgaatca      4560
     ccgcatcgag accattttcc tcaactggaa tagactattg gggaccaatt ctgatacaac      4620
     cagcacaccg gagagcatca ccacggaagg cctttgttgc agtcttcgtg tgcttctgta      4680
     caaaggccgt ccacctcgaa ttagttgccg acctaacgac tgctaagttc ctccaagcgt      4740
     tgcgtcgatt tgtctcccgg agaggactgt gttcggacat ttacagcgat aatgggcgga      4800
     actttgtggg agctgcgaat gagttacgcc acctgatacg aagcaaagaa caccgtgaac      4860
     aaatcgccca agaatgtgca cacaacaaca tccggtggca tttcaaccct cctaaggcgt      4920
     cgcacttcgg aggactctgg gaggccgcca tacagtcagc acagaagcac ttcatccgag      4980
     ttttgggggc gcaaacactc gcctatgacg acatggagac tttgctatcc caaatcgaat      5040
     gctgtctcaa ctctaggcct cttgtgccaa ttagcgacga cccatcggac ctggaacctc      5100
     taacgcctgg ccacttccta gtcggctcgg ccctcaaagc agtacccgat gttgacgtca      5160
     cttcgattcc ctttaatcgt ctgaagaaat ggcagcaaac gcagaaactg taccagcaaa      5220
     tttgggagcg atggcatcgg gactacctcg taaccttgca gccacgagca aaatggtgca      5280
     atccacctgt accactacaa aggaaccagc tcgtagttct cctggacgaa aatcttcctc      5340
     cgatgcgctg gccgatggcc agaatccagg atctgcatcc cgggccagac ggagtggttc      5400
     gagtcgtcac cgtccaaaca tctaccggta tattcactcg accagtagcg aaaatatgtc      5460
     tcctgcctat cgctccaatc atgcctccag cagaaaacac ttcccaaacg acaacaaaca      5520
     gcgcacctaa accagcttcc aatccatgat tccgtcacct tcttcgagta tgccgtagta      5580
     tcctgatgca cctgcaataa aatacaatgc cctaattgat tagggacaag gtaagcacct      5640
     gtccaatatc cctatctcgc aaaaatccgg ctaccgggtc ttatttgttt gccaggttat      5700
     aataaaatgg tgtacgatga catatcaacc gcatcaatgt aaacaatcat cgtgtcgtcg      5760
     gtatcgtcat catcgatcaa ctccatgaga aggtgcaccg tctgcctggt cgacgattga      5820
     gtcgacaatc atcatcatat cgacacacca gaaataggat ttctggaggg gccagtg         5877
//
ID   BEL-98_AA-LTR repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-98_AA_;
KW   BEL-98_AA-I; BEL-98_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-551
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 872-872 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 551 BP; 184 A; 111 C; 113 G; 143 T; 0 other;
     tgttcgcaca tatatggggc accatttcca cacctatcat catcatcaac gtcggtcaac        60
     cgcaatccac caccatggca agtcgggcga atgcactgaa cggaaattcg tccatcatcg       120
     tgactcgcta ccaatgatca tcggcggcta atataaaagg actagctgaa cgtcatcgcg       180
     ccctcttttg ttgtaccagc agattcgcat cacggattaa cgccgtcata ctagtgttcg       240
     ggagtcagta ctagtagtca gtgtactaga actagatttg aattttacac gctaagaaga       300
     aattagtgaa gttataaatt agaaataaaa agttaagtga aattgaattc gaaataaatt       360
     agagttagtg gacatttagc gagtaattta gtgagaacta aggattaata aaccaaaaag       420
     aagaagaact tacctgtagt gacttatact attgtgttga actgattact cacctgtgac       480
     tgtgaaaaag gaacctgaaa aagaaagtgt acccgtgaca accctcctgg ctttactgag       540
     cattcggaac a                                                            551
//
ID   BEL-99_AA-I repbase;    DNA;    INV; 2075 BP.
XX
AC   AAGE02034270;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-99_AA_;
KW   BEL-99_AA-LTR; BEL-99_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2075
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02034270; Positions    6697    4623.
XX
CC   'AGCCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..1554
FT                 /product="BEL-99_AA-I_1p"
FT                 /translation="MDSVARKRTALMGRLAGIRSRVSAMNSTTARIDDLDA
FT                 EMECLSDWWLDYRKLHDGILDLCKDDDLLDDIIKSGIEADQEHNSVKAMIT
FT                 QFQRVIRNRDNPVGNTTSVLALDHNASPVGLPELNLPKGMLPTFSGDYGEW
FT                 TSFFDLFISSVHNNPRLTDAQRLLYLKTYTSGSAAALLRHIKVEDRAYQGA
FT                 LDALKKRFDRKDHIVSHQIQRYLDIPTINAASASSLRRVYSIADDVIRALK
FT                 ASQREERDSWLIQILLVKLDPETRQLWADRSSLNEVDPQVRSIDSFLEFLD
FT                 QRAFTIEATQRPSYHRNNESSSKSSQRHCSSFVSTNSAVIPNCTLCEDQQH
FT                 NLYFCQRFKTLPSSERLRLTSELGVCSNCLRHGHDENRCSASKCRKCDQPH
FT                 HTLLHDAFLRQPSPQVTTMLAYNECSSVLLATAVVNVLDSQNQTHSVRAVL
FT                 DSASQACFITTSLKSRLLLQCETVNMSLQGISRKATQFRKLSPSTCVHEPQ
FT                 ATTNN"
XX
SQ   Sequence 2075 BP; 601 A; 525 C; 458 G; 491 T; 0 other;
     gtaatttggc gctgtagaca ggatagtaaa agtgttacgt gtaaagaagt gatggatagt        60
     gtcgcgagga aacgtactgc gttaatgggc cgacttgctg gtatacggtc cagagtgagt       120
     gccatgaact ctaccactgc gcgcatcgac gacttagatg ccgaaatgga atgcctgagt       180
     gattggtggc tagactatcg aaaacttcac gacggaattc tggacctctg caaggacgac       240
     gacctattag acgacattat caagagtggc atcgaggcag accaggagca caactcggtg       300
     aaggcaatga tcactcaatt tcaaagggtg attcgaaacc gagataatcc ggtcggtaat       360
     actacttcag ttctggcatt ggaccacaac gcttcacctg tgggactacc tgaactaaat       420
     ctcccaaagg gaatgcttcc gactttttct ggagactacg gagagtggac atcgttcttc       480
     gaccttttta tcagctcggt tcacaataat cccaggctca ccgacgctca aaggttgctt       540
     tatttaaaaa cgtatacatc tggatctgcc gcagcactcc ttcggcacat caaagtggaa       600
     gatagagcct accagggtgc tttagatgct ctgaaaaagc ggtttgatag aaaggaccac       660
     atcgtaagcc atcaaattca gcgctatctg gatataccaa ccatcaacgc agcttcggca       720
     tcgtcgcttc gtcgggtata cagcatagct gatgacgtaa taagagcatt gaaagcatca       780
     cagcgagagg aaagagatag ttggctcatt caaattcttt tggtgaagct ggatccagag       840
     actcgtcagc tatgggcaga tagatcatcc ttgaacgaag tcgacccaca agttcgttcc       900
     atcgatagct ttctggagtt tcttgaccaa cgagcgttca cgatagaagc cactcaacgt       960
     ccgtcgtatc atcgaaacaa tgaatcatca tccaaatcgt ctcaacgaca ctgctcaagc      1020
     ttcgtatcta ccaacagcgc agtgattccc aactgcacac tctgtgagga ccaacaacat      1080
     aatttgtatt tctgccaacg attcaaaaca cttccatcat cggaacggct acgtctgacc      1140
     agtgagctcg gcgtctgcag caactgtctt cggcatggcc acgatgagaa tcgttgttcg      1200
     gcaagcaagt gcagaaagtg tgaccaaccg catcacacct tgcttcatga tgcatttctt      1260
     cgacaaccat cacctcaagt tacaaccatg ctcgcctaca atgaatgctc gtcggtatta      1320
     ctcgccacgg ccgttgtaaa cgtcctcgac tcgcagaatc aaactcactc tgtgcgtgca      1380
     gtcttggact ctgcctctca agcctgtttc atcacgacct ctttgaagtc acgtctactc      1440
     ttgcaatgcg aaacggtcaa catgtcactt caagggattt cccgaaaggc cacccaattt      1500
     cggaagttgt caccgtcgac ctgcgttcac gaacctcaag ctacaacaaa caactgaaat      1560
     gtgctgtact cgaacaaatt tccgaaccac tgcctcgtca cttcatcaac atcgaaaagt      1620
     ggaatttatc gccctatgca ccactggcgg atgagaaatt caacataccc agtggcatcg      1680
     atcttctcat tggagcaaac atctttttcg aactactaca gcaggacaaa gtcgacctag      1740
     gaccagcaaa accaacactg caaaatagca agctaggatg gatcgtagca ggaagttaca      1800
     ccaccgaaag ttcatctgta gacatctgtg caaccgtaaa tagtttttcc aaggtgggcg      1860
     gtgtcatcga atcaaccact agagcacctg aggaagacca gaaggtgagc ggcgatcgtt      1920
     taataaaatc atcattagta tcatcacaca acttttccgg caccgagagc agctactgcg      1980
     aagctcattt gatgacgtcg atggaaacca tttcatcctg cagccaacaa gctatatatg      2040
     aagccaaaaa ttgactacgc aattggtggg cggaa                                 2075
//
ID   BEL-99_AA-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   AAGE02034270;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-99_AA_;
KW   BEL-99_AA-I; BEL-99_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-487
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02034270; Positions    4622    4136.
XX
SQ   Sequence 487 BP; 158 A; 114 C; 82 G; 133 T; 0 other;
     tgttgaggcc accagcaagc cgccggggtg ttttcataca ccactcaggc ggacgatcat        60
     gcctcatgcc ggcagcctca caaacacacc acaacactac atactcacca catttttcac       120
     ctggatccat ctagaaatac ctaaaagtag aaaaagaaca ttaatgctat tgaaatcata       180
     cttaccttta tgccttcaga acacactaga actacctatt gtttttgttt tgctttgatt       240
     gtttgacagt atgctagaat gttcgaagat tcaggctagg ttacactttg ctttcgcaaa       300
     cacgctaata ataagtaagg caacaataga gtattgaacc aatggaaaat tccacacgct       360
     tattgtaaac gagcagtata aataacaccc agttggcaaa ggtcaagtca gtctgaaata       420
     aaccgtgaat tcaaacgtat ccactttgtg aaaattattt cttccctagt tcgttaccgc       480
     tcgaaca                                                                 487
//
ID   BEL-9_AA-I  repbase;    DNA;    INV; 4082 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_AA_;
KW   BEL-9_AA-LTR; BEL-9_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4082
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions  978899  974818.
XX
CC   'AAGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           715..3192
FT                 /product="BEL-9_AA-I_1p"
FT                 /translation="MVNKTEKKLEGNILTLKRVLAIRDVVERFVAEYNHDR
FT                 DAIQVAVRLESLDRINQEFQRAQGEIERLDSEKFEEHIEVRTAFEDKYCVL
FT                 KGFLLSKMNPGQRSMDSTFFNNLTHQSAASFHHRLPKIDLPKFSGDESRWI
FT                 SFRDNFISMIHSNDDIPTVNKLHYLLQSLEGEAKKPFESVDVQANNYASTW
FT                 DALMKRYDNKRFLRKELFRSLFDLPMMKQESAQDLNTLVDDFQRRVKALAK
FT                 LGEPVVHWDTPLIFILSNKLDAATLRSWEHETRQKDDVKYEELIEFLSQHV
FT                 RMLKSVSSDLQQRFSSTNSKVAGPPARITASVKSVANTATTDPIQSIPQCL
FT                 VCSETHLLHQCPTFIKLSVTQRRELVSQRSLCWNCFRPNHQARFCKSRFSC
FT                 RTCHARHHSMLHDQAETAPISHVDTTKPPTQQPDSSAIAIAGPSGTSHPPE
FT                 VSMAVQSNNSTVLLETVSLLVIDQHGKEIPVRALLDSASMSNFVSKKLANS
FT                 LGIPRATVDVTVSGLGKSIKQVRGRITAMVKSKICNFSTTLDFLVMQKPTA
FT                 NLPTVTVNTDSWNLPNVPLADPQFNIPGMIDIIIGGEHYHKLHTGHRLSIS
FT                 DTMPMFINTHFGWTVSGKVSVNSAVSSPVCYLATVNHPIQPIHYQEPEAVD
FT                 HDPINPPNQSIDLKTNTTTRIHDEGSVVHPFRSDYPQVTNTKSQKIESPHS
FT                 YDLMQQRNRKPVTTEQTKRKHVEYVQEESPLYLLTAKHVAEPATKKTPTGT
FT                 SATPNQRSTTTIRYHTSMQLPRFKSKQIQSVRSPNSSPRSIFRQELQVQPL
FT                 QKIIHQYPSFIYQKLKCCSSVTIS"
XX
SQ   Sequence 4082 BP; 1140 A; 1012 C; 899 G; 1031 T; 0 other;
     ttggtccttc gagccggatg aggaggacaa cccaagccag gagccagcgt ctaggaggca        60
     agttggcgcc atcgtggtaa gtgtggtcaa aggcgaagac cacacaaagg taggccattc       120
     attttattcg ttctatgtgg agatcagttg ggccttttac acacattccg tgcttctctc       180
     cgataaagag gattgacttg cttgtaattt gcatgatcta ttgaaataaa ttgagcacaa       240
     aggcataata cgatcagtgg aatagctgca gaaagacggc aaatcgtttt tgcaattttg       300
     tcagtggtgg ctgataggca ttgattgcca tatttttttc aatttgcttt gcgccaacag       360
     tgtcgcacat tgaaaatagt acaccgtact gggtggtgga aaatcgattg ggataagaat       420
     tagatcatct tcgtatttac gatattttgc gatatcagtg gcgttcagcg gacacgcgta       480
     tcgcaaaggt ggcacatcgc gacgggaagg attgatcgta tcgatttcac gtgtcacttt       540
     cggtcgcacg cgtgcgtgta ggggtatcac gacgtgacgg gaaggatttt atcgatcgat       600
     tgcgtggtac ctccgtcgtt tctcgcgttg aatagtgtat cgcgacggga aggagaactt       660
     cgttcgattt gcactgttca cgttcggttt cgcgagtgat tcgagtggtg agtgatggtg       720
     aacaaaacgg aaaagaaatt ggaggggaat atcttgaccc taaagcgagt gttggctata       780
     cgagatgtgg tggaaaggtt cgtggcagag tataaccatg accgggatgc aatccaagtg       840
     gcagttcgtc tagagagttt ggacagaata aaccaggagt tccaacgtgc acaaggggaa       900
     atcgaaagac ttgacagtga gaagttcgag gagcatattg aggttcgcac agcttttgag       960
     gacaagtact gtgtgctcaa gggtttttta ctgtctaaaa tgaaccccgg ccagcgttca      1020
     atggattcaa cgtttttcaa caacctcact catcaaagcg cagcaagttt ccatcatcgg      1080
     ctaccgaaga tcgaccttcc aaaattcagc ggagatgaat ctaggtggat ttcattccga      1140
     gacaacttca tttcgatgat ccacagtaac gacgacatac cgaccgtcaa taagctccac      1200
     tacttattgc aatcgttgga gggagaagcg aagaagccat tcgagagcgt agacgttcaa      1260
     gcgaacaact atgcatctac gtgggatgca ctaatgaagc gatacgataa caaacgtttc      1320
     ttgcggaaag aactgtttcg aagcttgttc gatttaccga tgatgaagca ggagtcagca      1380
     caggatctca atacgttggt agacgacttt cagcggcgcg tgaaagcttt ggccaagcta      1440
     ggtgaacctg tcgttcattg ggatactcct cttatcttca tactttcgaa taagctggat      1500
     gcggctaccc ttcgatcctg ggagcacgag actcgccaaa aggatgacgt caagtacgaa      1560
     gagctcatcg aattcctttc tcaacacgtg cgaatgctga aatctgtgtc aagcgatctg      1620
     caacagcgct tttcatcgac caattccaag gtggctggcc ctccagcaag gataactgct      1680
     tcagtgaagt ccgtagccaa cacagctact accgatccca ttcaaagtat ccctcagtgc      1740
     cttgtctgtt ccgaaacgca tttgctacac cagtgcccaa cattcatcaa gctgtccgta      1800
     acccaacgaa gagagttggt atcgcagaga agcttgtgct ggaactgttt tcgtccgaat      1860
     catcaagcga gattttgcaa gtcaaggttt agttgccgaa cctgccacgc cagacaccat      1920
     tcaatgctac atgatcaagc cgaaacagcc cctatttctc atgtagatac gacgaagcct      1980
     cctacacagc aaccagattc ctccgcaata gcaattgcgg gaccctcagg aacatcgcat      2040
     cctcctgaag ttagcatggc tgtccaatcc aacaatagca cagtccttct ggaaacagtt      2100
     tctctcctcg ttattgatca acacggaaag gaaatcccag ttagagcact ccttgattcc      2160
     gcatcaatgt ccaattttgt gagcaagaag ctggcaaatt cacttggaat tcctcgagcc      2220
     accgtggacg ttactgtttc gggactagga aaatctatca agcaggtcag gggtaggatc      2280
     acagccatgg tgaaatcaaa aatttgcaac ttctccacca cactcgattt cctcgttatg      2340
     cagaagccca ccgcaaacct tccgacagtc accgtcaata cagattcatg gaacctgcct      2400
     aacgttccat tggccgaccc gcaattcaat ataccgggca tgatcgacat catcataggt      2460
     ggagagcact atcacaaact ccacactggt catcgtttgt caatcagtga taccatgcca      2520
     atgttcatca acacacactt cggatggacg gtatccggaa aggtttcagt aaactccgct      2580
     gtttcttcgc cagtttgcta tctagctacg gtgaatcatc ccattcaacc aatacactat      2640
     caggagcctg aggccgtcga tcatgaccca ataaacccac caaaccagag cattgatcta      2700
     aaaacaaaca ccaccactcg aattcacgat gaagggtccg tcgtacaccc ttttcggtcc      2760
     gattatccgc aagtcaccaa caccaaatcc cagaaaatcg aatcacccca ctcgtacgat      2820
     ctcatgcagc aacgaaatcg taagccagta actacagagc aaacaaaacg caagcacgta      2880
     gaatatgttc aagaagaatc tccactctac cttctgacgg ccaaacacgt tgccgaacct      2940
     gccaccaaga aaacgcctac cggaacctca gccactccga atcaacgttc taccactacg      3000
     ataagatacc acacaagcat gcagttgcca agattcaaat cgaagcagat acaaagcgtc      3060
     agatcaccaa attcgagtcc tcgaagtata ttcagacaag aacttcaagt ccagcccctt      3120
     cagaagataa tccaccagta tccttcgttc atctaccaaa agctgaagtg ctgctcatcg      3180
     gttactattt cctgaaactt caaagaccgg tagagcagtc cgaaactggc tcaaggcgca      3240
     tataaggcgc aatcaggtga ttggcgttcc tttctttcca gctgagtcag ttcgatctac      3300
     cgggtctttt attgttcaca gatcatccct tgttacacca tctttcatcg ctcgtattat      3360
     catcaacatc ttagttccgg agactacaaa gttcggcaga gcagtccgaa actgactcaa      3420
     cgcgcttttg gagcgcaatc aggtgattag cgttccaata atcttatctc ctcagttaga      3480
     tctaccggat ctttcgttgt tccagttcaa catgtcatcg aagtcgtcaa cattgttttc      3540
     atcccgcctc tcattgatcg acgaatattc aaagtcgaga agagcttcag ccgaatgatc      3600
     tacgtcctag ttaaccgccg acttgcattc aacacaaggc gtgtttgtcc ctttcgaatt      3660
     aattcatcgc atccaaccat tgttgtccat tagtgctatg cagttgctga ccattactgc      3720
     aaccactaag atcggtagag tggtccgaaa ccatctcaac gcgcattcag agcgcaatca      3780
     ggtgattagc gttccatttg attttactct cgtcgttcgt tctaccgggt ctttcttggt      3840
     tccagatttt ctactctcat ggcatctcca atgctcgttt tgtacggatc acattcaccc      3900
     atacaactct caactctact agtcgtcaat caatgttggt aaccgtgaat gggtccattc      3960
     agcagtactt cgtgtcgaac caccgaagat cacccgatcg agagtacgag agaaagagta      4020
     tcacgagaag taacgataga gttgtttgtt gaaacgaagt gatcgtttca aggtggccgg      4080
     aa                                                                     4082
//
ID   BEL-9_AA-LTR repbase;    DNA;    INV; 586 BP.
XX
AC   supercont1.344;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_AA_;
KW   BEL-9_AA-I; BEL-9_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-586
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.344; Positions  974817  974232.
XX
SQ   Sequence 586 BP; 175 A; 122 C; 131 G; 158 T; 0 other;
     tgatcagtat cagctgatca taattttgat gtgaatttgt aaatatgtaa ataacccact        60
     aaccctagaa ttaagcaatg aatttgaacc accctaacat tatatagact ctcacgagct       120
     ttactgagag cgaatacgaa cggtcaactt tctgcctgaa cgaagaaacg gcaattaaat       180
     cagtagcaaa taaaacgttg aacggttcgc taggaaggct atattcggtc ggtgattatt       240
     gttcttgttg cccgtagtct acgaaataaa gtgtagtgtc gtggtggaat aagcaaacca       300
     atttcaactg tggttccgaa ataattatct attggtcggt cgtgaagtgc gtgcgtgaat       360
     aaattcacga aactattcgc tcaattctgt gtggtgatcg tgaagcctcc aagagatctg       420
     tgcagatctg gtcttcttat cactttcgaa caagaaggtg aagaaaacgt gtgacagtgt       480
     ttcgtaccgc caaattgtcc ccactggttt ctgtgcgccg ttcgaagcac gaacggggag       540
     aaacaccccc gaatcccggc aacatatcga gcctgcggct cgaaca                      586
//
ID   BEL-9_AnFu-I repbase;    DNA;    INV; 5647 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5647
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 702-702 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           334..5619
FT                 /product="BEL-9_AnFu-I_1p"
FT                 /note="DUF1759, zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, integrase, and
FT                 DUF5641."
FT                 /translation="MQSPFTRSKKLKRTPEKQSTSHSLEPTQQQQKVKKDS
FT                 NKMDAQLKVLVKQREAVRRKLSRVSAALCDSDEQPNTNVKNVRFLQLQEKA
FT                 LANVYNECNEVQNKIYELTLSEADDEEQNDQYIEFEKVFNEVSLKLSMCLD
FT                 SVPKMEAAAPVVPSILPQAQPYLPPLKVPLPTFDGSYEKWYSFKAMFTTVM
FT                 NRYQQEEPALKLFHLRNSLVGKAAGIIDDELVNNNDYEAAWKILTQRYEDK
FT                 RVVVDKHIENLFGLTKVSRDNAANLRKVIDTCTKNVEALKNHSFPVDGLGE
FT                 QMLVNLIANKLDKKLRVAWETKQKKNVFSTYATLIEFLEEQCRISEKIDTG
FT                 VKPSTEAAKPRAVAKTLVVGESQQQEKCPICSAMHELRHCELFKQKSVSER
FT                 HEIVKRCGACFNCLSNGHRIRACQSGSCRRCGKKHHSLLHEDNPSHVPASV
FT                 APTFVPAEAPTTLCAKEVDPERQTVLSTAVVLVDGLCSTPYPCRAILDSAS
FT                 QLNFVTERFANLLSIKMETTDVIVSSLNGNKTRLNRRLRTTIRSRAGDIVA
FT                 ELDFLVTPRITGELPSKSFDISQWPISSEQVLADPTFNRRGPVDMLIGADC
FT                 FWNLMQDGRCELGPNRPVLRYTKLGWIAGGVIASDTTIVARTLCHTADDEP
FT                 LIDLLRNFYKVESCDEPRSSPKADEEVCLEHFQRTHERTAEGRYVVRHPFN
FT                 ERKGELGDSRETALRRFLALERKLDKQPDLKEQYSQFIREYEKLGHMREIV
FT                 EAPNEDPGSVFYLPHHCVLRPSSTTTKLRVVFDGSAKTSTGVSINDVLMTG
FT                 PTVQNDLTAILLRFRGFRYVFTLDIPKMFRQVIVHPEDTRYQRIFWRYNRN
FT                 DPITVRELLTVTYGLGPSPFQATMALKQAANDHQDEFPRAAEVVNRGTYMD
FT                 DTLTGANTLAEACQLQRDVTKLLAKACFSAHKWCANHSDIVAGVAEDLRGN
FT                 SFEVTDNTCKTTVKTLGITWNPFEDWFSVSVPDFDNLEGMTRRRLLSQLAK
FT                 IFDPLGFFGPVITYAKLILREVGELKIEWDDPVPTEVNEKWQHFRTEMTAL
FT                 REVRVPRWISWEDVLKLELQGFADASDQAYGACLYIQGSFANEESRMQLIC
FT                 SKSRILPKKRNPKEKAITTPRAELLAALLLARMVVKFLNATELQIESVHLW
FT                 SDSKIVLSWLKKPPELLQTYVSNRVREIQQLDQSFHWHYISTYENPADLIS
FT                 RGVTPKKLISSTMWWQPWPLQLITKNADELEIPDNELPEMRSGVTLTMTVP
FT                 FERFAMFERLSSFTKMVRSMAYLVRFARFIKSRKTELVKGRLTAIEMRTAT
FT                 YVIVRMVQREAFQPDILALMDGANKNRRLNGLKAFWDPDDGILRVGGRIKR
FT                 ALIPYDSRHQMLLPAKHPVTEALIRELHNDNLHIGQRGLLAVVRQRYWPLN
FT                 VKSIIRKVIRKCIVCFKANPLKTTQIMGDLPSYRVQPAPVFANTGVDYAGP
FT                 FLIKSSTTRKPQITKAYVCLFVCLQTRAVHVELVSDLTTDAFLASLRRFTS
FT                 RRGYPKTIRSDNATNFAGAKTELHELWRMFQNECATKKITDYCTDKGIDWS
FT                 FIPPRSPHFGGIWEAGVKQVKHHLKRIVGERKLTYEELYTTLTQIEAVLNS
FT                 RPLIPSSDDPSDYTAITPAHFLIGRELQTIPEPDYSILKENRLSRWQLVQS
FT                 MLQHFWRRWTAEYLPELQNRSKWLKRKEIKVGSLVLLIDQNTPPLQWPLGR
FT                 IAAVHPGDDGATRVVTVRMSNGAEFKRAVTEVCLLPLDEDED"
XX
SQ   Sequence 5647 BP; 1594 A; 1301 C; 1443 G; 1307 T; 2 other;
     gtttggtcct acggaaccgg atacgttgaa aaccagtgtg cgttatctgt gccttttcgc        60
     gtaaaatcgg tttatggaac atccacagtc ggatgttagt ggcgtgacac gtggtgcgtc       120
     gctaccgagc caatagagta gcactatccg aaaaacaaag gaccgtaatt cggaaagtgt       180
     gaktcgtcgg atgtcagccc gaaggcattc cgatcgaaaa aagtgcgtat tcagtataga       240
     accgcgtgca acttagcttg gcgtgggttt tgcctaaagc aaatggcgga ccggcgcaag       300
     tgaagtagtg tgagtgtgca tacgtagtgt acaatgcaat caccgtttac acggtcaaag       360
     aaactgaaac gaacaccaga aaaacaatcg acatctcatt ctctagaacc aacacagcaa       420
     caacagaaag taaagaaaga ttccaacaaa atggatgctc agttgaaggt tttagtgaag       480
     caacgcgagg cagtgcgtcg aaagctaagt cgtgtgagtg cagccttgtg tgatagcgat       540
     gaacaaccca acaccaacgt aaaaaacgtg cgcttccttc agctccaaga aaaggcttta       600
     gcaaacgtgt acaacgaatg caatgaagtg cagaataaaa tctacgaact aacgctctct       660
     gaagccgatg acgaagagca gaacgatcag tacatcgagt ttgagaaagt gtttaacgaa       720
     gtttcgctga agttgagcat gtgcttagat tccgtgccca aaatggaggc agcagctcca       780
     gttgtgccat cgatcctgcc gcaagctcag ccctaccttc caccgttgaa agtgccctta       840
     ccgactttcg atggatcgta tgagaagtgg tactcattca aggctatgtt tactaccgta       900
     atgaatcgat accagcagga agaaccagcc ctgaaattgt tccatctccg gaacagtctg       960
     gtcggaaagg cggcaggtat catcgacgac gagctagtaa acaacaacga ttatgaagca      1020
     gcttggaaga tccttacgca acgttacgag gataaacggg ttgtcgtaga caaacacata      1080
     gagaacctct ttggtctaac caaagtcagt cgcgacaatg cagcaaactt gcgtaaggtg      1140
     atcgacacct gtacgaaaaa cgtcgaggcg ttgaaaaatc atagttttcc ggtagatggt      1200
     cttggtgagc aaatgctggt aaaccttata gccaacaagt tggataagaa actaagggtt      1260
     gcgtgggaaa ctaaacaaaa gaaaaacgtg ttttcaactt acgctacatt gatcgagttt      1320
     ttggaggagc aatgtagaat ttcagagaag atagacaccg gcgtgaaacc ttcgacggaa      1380
     gctgcgaagc caagggcagt ggcaaaaacg ctagttgtcg gtgaatctca gcaacaggaa      1440
     aagtgtccaa tatgcagcgc catgcatgaa ctaagacact gtgagctttt caagcagaag      1500
     agtgtcagtg aaaggcacga aatagtgaaa cggtgtggcg cttgcttcaa ctgtttatcg      1560
     aatggtcacc gcatccgagc atgtcagtct ggttcttgcc gtcgatgtgg caagaaacat      1620
     cacagcttac tccacgaaga caaccctagc catgttcccg ctagtgtagc gccaacgttc      1680
     gtgcctgctg aagctccgac caccttgtgt gcaaaagaag tggatccgga aagacaaacc      1740
     gtgctctcga ccgcagttgt tttagtagac ggtttgtgta gtacgccata cccgtgccga      1800
     gcaattctgg attctgcatc acaactaaac tttgtcaccg aacgatttgc taaccttctc      1860
     tcgataaaaa tggaaaccac ggacgtcatc gtaagtagtt taaatggtaa taaaacacgt      1920
     ttaaaccgta ggttgcgcac gacgatcagg tctcgtgccg gagacattgt tgctgaactg      1980
     gattttctag tgaccccacg aatcactggt gaacttccat cgaagtcttt tgacatatca      2040
     cagtggccca tctcgagcga acaggtgctg gccgacccta ccttcaacag aagaggacct      2100
     gtcgatatgc tgattggcgc cgattgtttt tggaatttga tgcaagatgg ccgatgcgaa      2160
     ctcggtccta atcgacctgt gctgcgatac acgaagctag gttggatagc cggcggtgtg      2220
     attgcgagtg atacgacgat cgttgcgcgc acactttgcc atactgctga cgatgagccg      2280
     ctcatcgatc tactgaggaa cttctacaag gtagaatcct gcgacgagcc ccgctcttct      2340
     ccgaaggcgg acgaagaggt gtgtctggaa catttccaac gcactcacga gcgaactgcg      2400
     gagggtcggt atgtggttcg acatcccttc aacgaacgta agggcgagtt aggagactcg      2460
     cgtgaaacag cgctgcgacg ttttctggct ctggagagaa aactcgacaa gcagccggac      2520
     ctaaaggagc aatactcgca gttcatccga gagtacgaga aactcggaca catgcgcgag      2580
     attgtggaag caccgaacga ggatccaggg tcggtgtttt atctacctca tcactgcgtg      2640
     ctgaggcctt caagcacgac aactaaactc cgagtcgtgt ttgacgggtc ggcgaagacg      2700
     tcaacaggtg tttcgataaa cgacgtcttg atgactggac caacagtcca gaacgacctc      2760
     actgcaattt tgcttcgttt cagaggtttt agatacgtct tcacactcga tattccgaag      2820
     atgtttcgtc aggtgatcgt ccatccggaa gacactaggt accagcgaat cttttggaga      2880
     tacaatcgga acgatccaat tacagtaaga gagctgctca cggttacgta tggcttggga      2940
     ccctctccat tccaagcaac catggcgctc aaacaagctg caaacgatca tcaggatgag      3000
     ttcccgaggg ctgccgaggt ggtcaacaga ggaacatata tggacgatac actgacgggc      3060
     gccaatacac ttgcggaagc atgccaacta caacgagatg tgacaaaatt gctagcgaaa      3120
     gcttgtttca gcgctcataa gtggtgtgct aatcattccg atatcgttgc aggagtagca      3180
     gaagatttac gaggaaattc ttttgaggtt accgacaaca cctgcaagac gaccgttaag      3240
     acgttaggca ttacatggaa tccgtttgag gattggtttt cggtatccgt tcctgacttc      3300
     gacaacctag aaggaatgac tcgtagaaga cttctgagtc agctggccaa gattttcgac      3360
     ccgcttggat tctttgggcc agtaattaca tacgctaagc tgatactacg wgaggtcggc      3420
     gaactgaaaa tcgaatggga tgacccagtc ccaaccgaag tcaacgagaa gtggcaacac      3480
     ttccgaaccg agatgacagc gctgagggaa gtccgagttc caagatggat ttcctgggag      3540
     gatgtgctca agttggaact gcaagggttc gctgacgcat ccgaccaagc ctatggtgca      3600
     tgtttgtaca tacagggatc ttttgccaac gaggagtcca ggatgcaact gatttgcagt      3660
     aagtcccgaa ttctaccgaa gaagagaaat ccgaaggaga aggccattac gacccctcga      3720
     gctgaactat tggcggcact gttactagca agaatggtcg taaagttcct gaatgctacg      3780
     gagcttcaaa ttgagtctgt tcacctatgg agcgattcaa aaatcgtctt gtcttggctt      3840
     aagaaaccac cggagctcct gcagacgtac gtttcaaatc gggtaaggga gattcaacaa      3900
     ctcgaccaat cattccactg gcattacatt tccacttacg agaatccagc cgatttgatt      3960
     tcccgtggag tcacgcctaa gaaattgatt agttcaacga tgtggtggca accgtggcca      4020
     ctgcaactca tcaccaagaa tgcggacgaa ttggaaatac cagacaacga gctaccagaa      4080
     atgcgatctg gagtgacgtt gaccatgact gttcctttcg aacgtttcgc gatgtttgag      4140
     aggttgagca gttttacaaa aatggttagg agtatggcct acttggtgcg ttttgctagg      4200
     ttcatcaagt cacgcaaaac ggagctggta aagggtcgac tcacagcgat agagatgcgt      4260
     acagcgacgt acgtaattgt gcggatggtt caacgcgaag ctttccagcc agatatcctc      4320
     gcgctgatgg acggtgcaaa caaaaaccgt cgactaaatg gactgaaggc gttttgggat      4380
     cccgacgatg gcattttacg agtagggggt agaatcaagc gagctctcat accatacgat      4440
     agtcgtcacc agatgctgct accagctaag catcctgtca ccgaggcact tattcgtgaa      4500
     ctacacaacg acaacttgca catcggacaa agaggtttgc ttgcagttgt acgtcaacgg      4560
     tactggccac tgaatgtgaa gagcatcatc cgtaaggtaa tacgaaaatg tatcgtatgc      4620
     ttcaaggcaa atccattgaa gacgacgcag ataatgggtg atttgccgtc gtatcgtgtt      4680
     cagccagcac ctgtctttgc gaatacaggt gtggattacg ctggtccctt cttgattaag      4740
     tcttccacaa ctcgcaagcc acaaattacg aaggcctacg tctgcttgtt cgtatgcttg      4800
     caaactcgag ccgtacacgt ggaattggtc tcggacttga cgacggatgc cttccttgca      4860
     agcttgcgac gattcaccag ccgtcgcgga tacccgaaaa ctatacgttc tgacaatgca      4920
     accaactttg caggggccaa aacggagttg catgagcttt ggcgtatgtt ccagaacgaa      4980
     tgcgccacga agaagatcac cgattattgc actgacaagg gtattgactg gtcgttcata      5040
     ccacctcgaa gtccgcactt tggtggtata tgggaggctg gcgtgaagca ggtcaaacac      5100
     cacttgaaac gaattgttgg tgaaagaaaa ctaacctacg aggagctcta cacgacgctg      5160
     acacagatag aagcggtatt aaactctcga cctttaatac cgagctctga tgatccgtcc      5220
     gattacactg caatcacccc agcacatttc ctgataggga gggaattgca aactattcct      5280
     gaacctgact attctatcct taaagaaaac cgtctctcac gatggcagtt ggtgcagtct      5340
     atgctgcaac acttctggag acggtggact gcagagtatc tgccggagct gcagaatcgt      5400
     tcgaaatggt tgaagcggaa ggagatcaag gtgggatctc ttgtgctgct gatagaccag      5460
     aatacaccac ctctgcagtg gcctcttgga agaatagcgg ctgtacaccc cggagatgac      5520
     ggtgcaacgc gcgtcgttac tgttagaatg tcgaatggag cggagttcaa acgtgcggta      5580
     accgaagtct gtttgttgcc gttagacgaa gatgaagatt gaaatactat ttcaacgccg      5640
     gggagga                                                                5647
//
ID   BEL-9_AnFu-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   28-DEC-2021 (Rel. 27.02, Created)
DT   28-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 22(2), 715-715 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 61 A; 40 C; 46 G; 70 T; 0 other;
     tgttatgcta tttgggtatt tttgaaattg gtagttggga gccaagtata cctcagtcgt        60
     aaggacacct tggcttcctg taacgtgtgc acaaatacca atatgaataa agcagagtgc       120
     aagtattgaa cttagtgaaa ggacgtgttt tttctttgct cccgaaattc gtacttgtgt       180
     cctctcttgc aaatatatac agtccactcg aagaaca                                217
//
ID   BEL-9_CQ-I  repbase;    DNA;    INV; 5976 BP.
XX
AC   AAWU01008465;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_CQ_;
KW   BEL-9_CQ-LTR; BEL-9_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5976
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 171-171 (2011).
XX
DR   GenBank; AAWU01008465; Positions    6368     393.
XX
CC   Positions [4980-5558] - Integrase core
CC   'AATC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           429..5924
FT                 /product="BEL-9_CQ-I_1p"
FT                 /translation="MQLRSGAKKCLFFTPCGKSPGSPVLRVTTPVLSVREQ
FT                 LEARRAEKTRIAMAETVAALASCCEKTKAKVTRIKRAVLTAEQDHKKFSVH
FT                 ALKLYLKTTDAAYEEFNSFQNKIYLADPTKKDEFEPKFIDFEELYEFTRIA
FT                 LCEMLQAYEDDEKAALAAAAQVAAERAIKPVVKCQHGDSSSSVPVSFPPTL
FT                 VLQQSALPTFDGRYENWFRFKQMFCDIAEKCTADSAATKLHYLDKALIGKA
FT                 QGAIDQQIIRDNDYAQAWVSLQEQFENLPALVNDTVSRLLGVKAMMSDSYV
FT                 QLKNLLDDVEKSVNSLEYHNLKMDRLSEAIITNLTASKLDMATRKIWESSV
FT                 ARGALPEYKKMMKVLRNQQAVLERCERAKPTQKTKVTNSNPRTSTPPTKAH
FT                 TATVGKHESCAMCNAEHLLEKCEAFLKLNVNARYGKAKQFGLCFRCLKRGH
FT                 RTADCKQKDKCSECSRAHHTLMHPDSKKEPEKQPPETSAAGTNASSATVSK
FT                 DGSTSTNCPLYCNTNETPKQVLLATAVVNVVDACGVQHKCRALLDSGAMAN
FT                 FMSQSFADLLNLKKMPANVPVVGVNGMETVVKFKVEAKVESRTTAYNFCLN
FT                 YLVMPKVTGPLPVDKVEVERWPIPKDLALADERFYEPGRIDLLIGAEVFFE
FT                 LLQSGKMMMSAELPILQESVLGWLVSGRVAETGTTGTVRVCHALAKQTPEA
FT                 QLAGLLRQFWSVDEQEFPATTSETSSDCEKHFLETHSRNESGRYVVRLPFR
FT                 SNVGELGLSREQAEKRFYALERRLDKNANLKQQYKMFIDEYISLGHARVID
FT                 DAKADANYLPHHCVLKPDSATTKLRVVFDASAKSSTGLSLNDVMMTGPTVQ
FT                 RTLFDIVLRFRCHKYVFTADVPKMYRQVEVHEKDRKYQQILWRDDHQQPLR
FT                 TIELSTVTYGTAAAPFLATRALNQLALDERHDFPEASTSVLNNFYVDDVLA
FT                 GADDLCQAKQLQQDMIEMLARGGFQLHKWCANHAALLEEIPVENRAKTLNF
FT                 EKNDEGEVVKTLGLLWDPVSDVFKFSVKPFKKSTERPTKRQIMSDIARLFD
FT                 PLGYLGPAVMIAKLVMQQLWKEKFHWDDPVPEDVAKMWERFRSELCEISEL
FT                 KIPRAVAAAVDVTSYELHGFADASMKGYGCSVYLRSLKRDGTAEMMLLCAK
FT                 SRVAPLKELNRQPKDDAELEDLTIPRLELCASKLMVEQVVKVLDAVELDIS
FT                 RVVLWTDSQIVLDWLKRLKPDTSVFVRNRVAAILKLSKKFEWRHIPTALNP
FT                 ADLISRGVYPLKLIVCDLWWHGPEFLRTTVATVQPPNLVADEANPDGDQPG
FT                 DPDPEIHVLAASTDTNENPPLAVINDCSDYRKLQRIFGYVTRFLYNCRHKP
FT                 AERRGSYLKIGELRNAQLLMVMVVQHAVYGEEISCIRKNQPVKGKLRNLNP
FT                 MYDETERVLRVGGRIRHSDLPRDQKHPMILPERQHLTELLINTLHRENLHV
FT                 GRNGLLAVIRRAFWPVNAKRTIYRVLKMCVQCFRVKPSDVPQFMGDLPSSR
FT                 VTEALPFSRTGVDYAGPLLLKQGRMRSPVKAYIALFVCMTTKALHLELVTS
FT                 LSAEAFLGALHRFVGRRGNVSVMRSDRGTNFVGGDRQLKELHELLKTQLLE
FT                 RKIADFCQVRGIDWKFNPAKAPHQGGLWEAGVKSVKHHLNRTLKEAYLTYE
FT                 ELNTLLVQIEAILNSRPLCQQSDDPCDYQALSPAHFLIGRELTAVAEPLYG
FT                 GVRENTLTRYQIVQKRKQDFWRRWSRDYVTELQKRGKWDKAPAMIRIGMLV
FT                 MLKEDNTPPQTWRLGRIVDTHPGGDGVVRVVTVRTSNGATFSRPTTQIAIL
FT                 PIQDNEEEKD"
XX
SQ   Sequence 5976 BP; 1493 A; 1537 C; 1806 G; 1140 T; 0 other;
     tttggtcact tcgaacctga tatcgaaccg cgagtgaata tccggattgt tacgccgggg        60
     acggaatttc ggtgaaattg tgggcggcga gacggattca tccggtgccg cttggaattc       120
     cgcgcgtagc tcagattgtg gactcccgcg aggcctgtgg ccaatttgat tgttgggagg       180
     gttgttgaca cgttgattgt ggacgcaacg gggaagtgac ggccgtttca aggtgattga       240
     tgcccgctga acctgcgctg aagagcggtt ctgcggcaag gatttgatcg gccgaagaag       300
     tgagtgaaag aagaagacgt gagagtccac aaactgagcg agaagtgtga ttcggcgaaa       360
     agtcgaaaga agaagaaaaa gtgcttctga aaaactaaac tgaaagagaa agaaaagtga       420
     aaaagggtat gcaactgagg tctggggcaa aaaagtgctt gttttttacg ccctgtggaa       480
     aaagcccagg atcaccagtg ctccgagtga ctacgccggt tctgtcggtg cgtgaacagc       540
     ttgaagcgcg aagagcagag aagacgcgta tcgcgatggc ggagaccgtc gcggcgctcg       600
     ctagctgctg cgagaaaacc aaggcgaagg tgacgcggat taagcgggcg gtcttgaccg       660
     ctgagcagga ccacaagaag ttcagcgtac acgcgttaaa gctgtacctg aaaacgacgg       720
     atgctgccta cgaagaattc aactcgttcc agaacaagat ttacctggcc gaccccacga       780
     agaaggacga gtttgaaccg aagttcatcg attttgaaga gctgtacgag ttcactcgta       840
     ttgctctctg cgagatgctg caagcttacg aggacgacga aaaggcagcc cttgccgcgg       900
     cggcgcaggt cgctgcagag agagctatca aaccggtcgt gaaatgtcaa cacggcgaca       960
     gttcctctag tgtccccgtg tcgttccctc caaccctcgt gttgcagcag tcagcgctcc      1020
     caaccttcga cgggcgctat gaaaactggt tccggttcaa gcagatgttt tgcgatatcg      1080
     ccgagaagtg cacggcggat tcggcggcta cgaagcttca ctacctcgac aaggcgctga      1140
     tcggaaaggc tcagggagct attgatcaac agataatccg ggacaatgac tacgctcaag      1200
     cctgggtctc cctccaggaa caatttgaga acctgcctgc gttggtcaac gacaccgtct      1260
     cgaggctgct gggcgtcaag gcgatgatga gtgattcgta tgtccagctg aaaaacctgc      1320
     tggatgacgt cgagaagagt gtgaactcct tggagtacca caacctaaag atggacagac      1380
     tttcggaggc catcatcacc aacttgaccg cttcgaagct tgacatggcg acacggaaga      1440
     tctgggaatc cagtgttgcg cgtggtgctc tccccgagta caaaaagatg atgaaggtat      1500
     tgcggaacca gcaggcagtg ctggagcgct gcgaaagggc gaagcctacc cagaagacca      1560
     aagtgacgaa ctcgaacccc cgcacatcga cgccacctac gaaggcccac acggcgactg      1620
     ttggaaagca cgaaagctgt gcgatgtgca acgctgaaca cctgctggag aagtgcgaag      1680
     catttctgaa gctgaacgtg aacgcgcggt acggcaaggc gaagcaattt ggactctgct      1740
     tccgttgttt gaaacggggc caccgcacgg cagactgcaa gcagaaggac aagtgctcgg      1800
     agtgctcgcg agcacaccac acgctgatgc accccgacag caagaaagaa cccgagaagc      1860
     aaccaccgga aacttcggct gccggaacga acgctagcag cgccactgtt agcaaggatg      1920
     gatcgacctc gacgaactgc cccctctact gcaacaccaa cgaaacacca aagcaagttc      1980
     tgttggcaac cgcggttgtc aacgtcgtcg atgcatgtgg agtacagcac aagtgccgag      2040
     ccctactgga ctcgggcgcg atggccaact tcatgtcgca gagcttcgcg gacctgctga      2100
     acctgaagaa gatgccggcc aatgtcccgg tcgttggcgt gaacggaatg gagacagtag      2160
     tgaagttcaa ggttgaggcc aaggtcgagt cccgcaccac ggcgtacaac ttctgcctca      2220
     actatctggt gatgccgaag gtgactggac cgctgcccgt ggacaaggtc gaagtggagc      2280
     ggtggccgat tccgaaggat ttggcgctgg cagacgaaag attctatgaa cccggccgaa      2340
     ttgatttgct catcggagca gaagtgttct tcgagttgct gcagagcggc aaaatgatga      2400
     tgtctgcgga actacccatt ctgcaggaga gcgtcctagg atggctggta tcgggacgtg      2460
     tagctgaaac aggaacgacg ggcacggtgc gagtctgcca cgcgctggcc aagcagacac      2520
     ccgaagcaca actggctggt ttgctgcggc aattctggtc ggtcgacgag caagaatttc      2580
     ctgcaacgac ctcggagacg agcagtgact gtgagaagca tttcctggag actcacagcc      2640
     ggaacgagtc cggacgctac gttgtgcggt tgccattccg tagcaacgtg ggcgagctgg      2700
     gactgtcgag agaacaagcc gagaaacgat tctacgcact ggaacgtcga ttggacaaga      2760
     acgcaaacct gaagcagcag tacaagatgt tcatcgacga gtacatctcg ctcggccacg      2820
     cccgagtgat cgacgacgcc aaggcggacg caaactatct accccaccac tgcgtactga      2880
     agcccgacag tgcaaccacg aagctcaggg tagtgttcga tgcgtcggcc aagagctcca      2940
     ccggtttgtc gctgaacgac gtgatgatga ctggcccaac agtgcagcgc accctcttcg      3000
     atattgtgct gcgattccgg tgccacaaat atgtcttcac cgccgatgtg ccaaaaatgt      3060
     atcggcaggt ggaggtgcac gaaaaagatc ggaagtacca gcagattctc tggagagatg      3120
     atcaccagca gccattaagg acgatagagc tttcaacggt cacctacggc acggctgcgg      3180
     cccccttttt ggcgacacga gcgttgaatc agttggcgct ggacgaacgg catgactttc      3240
     ccgaagcaag cacatccgta ctgaacaact tctacgtgga tgacgtgctt gccggagcag      3300
     atgacctatg ccaagcaaag cagctccagc aggacatgat cgagatgctg gcaagaggcg      3360
     ggttccagct gcacaagtgg tgcgccaacc atgcagcgct gctggaggag attccggttg      3420
     aaaaccgggc caagacgctg aacttcgaga agaacgacga gggcgaggtt gtcaaaacgc      3480
     tcggcctact ttgggacccg gtgagtgacg tgtttaagtt cagcgtgaag ccgttcaaga      3540
     aatcgacgga acgtccgacg aagcggcaga tcatgtccga cattgcccgt ttgttcgatc      3600
     cgctcgggta cctcggacca gctgtgatga tcgccaaact tgtgatgcag cagctctgga      3660
     aggagaagtt ccactgggac gacccagtac cggaggatgt ggcaaagatg tgggagagat      3720
     tccggtctga gctgtgcgag ataagcgagt tgaagattcc acgcgccgta gctgcagcag      3780
     tagacgtgac gagctatgaa ctccacggct tcgcagacgc gtcgatgaag gggtacggct      3840
     gctctgtgta cttgcggagt ctgaaacgag acggtactgc ggagatgatg ctgttgtgtg      3900
     cgaagtcgag ggtcgcaccg ttgaaggaac tgaaccgcca accgaaggac gacgctgagc      3960
     tggaagattt gaccattccc cgactggagc tctgcgcgtc gaagctgatg gtcgagcaag      4020
     tggtcaaggt tctcgacgcc gttgaactgg acatcagccg cgttgtgctc tggacggact      4080
     cgcagattgt tctggactgg ttgaagcgct tgaaacctga cacttcggtg ttcgtgcgca      4140
     accgggttgc tgcgattctg aaactgagca aaaagtttga atggaggcac ataccaaccg      4200
     cactgaaccc agctgacttg atctcacgcg gtgtgtaccc actgaagctc atcgtgtgcg      4260
     acctgtggtg gcatggccca gaattcctgc ggacaactgt tgccactgtc cagccgccga      4320
     acctggttgc cgacgaagca aaccctgacg gcgatcaacc tggagatccc gacccagaaa      4380
     tccatgtatt agcggcctct accgacacga acgagaatcc acccttggcc gttatcaacg      4440
     attgcagtga ctacaggaag ctgcaacgga tctttgggta cgtgacgagg ttcctgtaca      4500
     actgccggca caagccggcg gagcgacgcg gatcctactt gaagattggc gagctgcgga      4560
     acgcgcagtt gctgatggtg atggtggtac agcacgcagt gtatggagag gaaataagct      4620
     gtatccgcaa gaaccagccg gtgaagggca agctccggaa cctgaacccg atgtacgacg      4680
     aaacagaacg tgtgctgcgg gtcggtggac gcatccgtca ttccgatctg cctcgcgacc      4740
     agaagcaccc catgattctt ccggaaaggc aacacctcac cgaactcctg ataaacacac      4800
     tgcaccggga gaacttacac gttggtcgca acgggttgct ggctgtgatt agacgtgcct      4860
     tctggccagt caacgcgaag cgaaccatct atcgggtgct gaaaatgtgt gtgcagtgct      4920
     tcagggtgaa gcccagtgac gtgccgcagt tcatgggaga tctgccgagc agccgagtga      4980
     ccgaagccct acctttctcc agaaccggcg tggactacgc cggaccgctt ctactgaaac      5040
     aggggagaat gagatctcct gtgaaggcat acatcgctct gtttgtatgc atgacgacga      5100
     aggctctgca cctcgaactg gtgacgtcgc tctcggctga ggcctttttg ggcgcactgc      5160
     atcgttttgt tggacgacga ggaaacgtgt ccgtgatgag gtcggaccga ggcacaaact      5220
     tcgtcggagg agatcgccaa ctgaaggagc tgcacgagct gctgaagacg cagctgttgg      5280
     agcgcaagat cgcggacttc tgccaggtcc gcggaataga ctggaagttc aaccccgcca      5340
     aggccccgca ccagggtggc ctctgggaag caggagtgaa aagtgtgaag caccacctga      5400
     accgcacgtt gaaggaggct tacttgacgt acgaggagtt gaacacactg ttggtgcaaa      5460
     ttgaggcgat tttgaactcg cgccctttgt gccagcaatc cgacgatccc tgcgactacc      5520
     aagcgttgag cccggcacat ttcctcattg gccgagagct caccgcggtg gctgagccgc      5580
     tttacggagg agtacgagaa aacacgctga ccaggtacca aatagtgcag aagaggaagc      5640
     aagatttttg gcgtcgctgg tcccgcgact acgtgacgga gttgcagaag cgaggaaagt      5700
     gggacaaggc gccggcgatg atcaggatcg ggatgctagt tatgctgaag gaggacaaca      5760
     cgccgccaca gacctggcgg cttggtagaa tcgtcgatac tcatccggga ggcgacggcg      5820
     tggtccgcgt tgtgacggtc cgtacaagca acggtgccac gttcagtcgg ccgactacgc      5880
     agatcgcaat tctgccgatc caggacaacg aggaggagaa ggattgagcc cagctcaacg      5940
     gggggagaat gttgcgtgaa aactagattt aagatt                                5976
//
ID   BEL-9_CQ-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   AAWU01008465;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_CQ_;
KW   BEL-9_CQ-I; BEL-9_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 172-172 (2011).
XX
DR   GenBank; AAWU01008465; Positions     392     185.
XX
SQ   Sequence 208 BP; 65 A; 42 C; 52 G; 49 T; 0 other;
     tgttacggtg tagctaactg tcctaccccg cgagtagtga caggactggc ttgaattttt        60
     cttgccgcat cgcagcggaa ctagatcgac gaagggaagg cgaaaaagga caagaacgaa       120
     ctgacactcg cgcaacgcgg acgcgtttga attgaataaa aattagtttg taaaatacag       180
     tccattgaat ttgattttga ccgaaaca                                          208
//
ID   BEL-9_DAn-I repbase;    DNA;    INV; 4060 BP.
XX
AC   AAPP01016011;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DAn_;
KW   BEL-9_DAn-LTR; BEL-9_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4060
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016011; Positions   27070   31129.
XX
CC   'ATTTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1727
FT                 /product="BEL-9_DAn-I_2p"
FT                 /translation="MEQLKALTKGRTRLKANITRSLAWAEDAQHSNATRAE
FT                 VSSRLKHLDTTWKEFNRFGDEIAMLDEVDGYVDPEHDNIFYEEKYLRADAL
FT                 LSAMVGTRPSPSIGNSENGSGVLQNNDAIISLLQQQQQLFEQLAANRATAN
FT                 MSRPEGGDAYAANSGSAQMVGASAQSELPKIQIKRFAGNYSEWPAFKDIYE
FT                 STIHNKANLTNTQKFHHLKSLLIDEAANLVRHLAITDSAYNTAWERLNERY
FT                 NRPRHIVNSLLEQFMKLPTTTRSDTATLRKVSDGANEIVRGLDAIEETGRD
FT                 CWIIYLTLEKLDADTRRRWIERSVETDSPTLEEFFKFLDARCEELELSKRE
FT                 TIGGKTTASIGDKTRKVTHSLVVLEGNKCSKCHSTEHRLYGCQQFLDMSAG
FT                 QRVSFAKENALCYNCLNPGHGVRKCKSTFKCRQCKGQHHSLLHLQRTQQAI
FT                 GTISQSGEDQEDPSAHISTVTTSHIAQAEGSAAIVCAQGSANSQQSTGWNR
FT                 STLPTAMVNVRNAMGDLVACRLLLDTGSELSYISERCIQTLGLARTPSTKG
FT                 DAAL"
FT   CDS           2255..4060
FT                 /product="BEL-9_DAn-I_1p"
FT                 /translation="MREYQELGHMREISPSEIPKGRNFYLPHHPVLGRKLR
FT                 VVFDGSYQDAKGMALNDTLSIGPSIQRDLFAVCLRFRMYKYVFSADIVKMF
FT                 RQIWVSEKHRDYQRIVWREDPSDPIKHFQLCTVTYGTSCAPFRAVRVLEQL
FT                 AADHKHEFPNAEKIVLEDFYVDDVLTGANSEDELLRIRDELVQLMSCANLE
FT                 LGKWVSNTKRIESEDNTDSSQSSVKVLGLHWHPGEDTLSYNVNLSKYPSRM
FT                 VNDDGTISVAVFAAKTRVAPLKQQSLPRLELCGALILSQLLQSIKAGLIHN
FT                 DVSIYAWSDSTIVLSWLSYSPAQLKTIVGNRTSEILETIPKHAWRHVDSKS
FT                 NPADCATRGLEVSKLIDFQLWWKGPSWLRDKEQFLVKLNNTHNCTSLSDKR
FT                 IQDEVKSNCLAAQTTVTTDNPWDKLLNRNSSWLKLIHTLAYVLRFIHRMKH
FT                 PSSKQTSNSLTFDEIKAARIRWLQHAQAGFQQEIQLLRANKALGNQSQLVK
FT                 ISPIIDKDNLLRVGGRIQHSQLSAEAKHQQRPKWTMTTPNISIGSVALVKE
FT                 SNTPPALWHLAKVIDTFQGKDNMVRAVRIIRLKTRPITKIAKLLSSETVFQ
FT                 GGPG"
XX
SQ   Sequence 4060 BP; 1224 A; 933 C; 988 G; 915 T; 0 other;
     ttgtttggtc cttcgagccg gatttgtttt gtagttttct gtgcattggt tctcatttgt        60
     aattgtttct cggcatggag caattaaaag cattgacaaa agggcgcacc agactcaagg       120
     ccaatatcac acggagcttg gcttgggctg aggacgcgca gcattcgaac gccacacggg       180
     cagaggtgtc ttcgcggctg aagcatctcg acacaacatg gaaagaattc aatagatttg       240
     gtgatgaaat agctatgctc gacgaagtag atggctatgt ggatccggag catgacaaca       300
     tattctacga ggaaaaatat ctaagggcag atgcattact ttcggcgatg gtaggtacaa       360
     gacctagtcc atcaattggg aacagtgaaa acggcagcgg cgtgctgcaa aacaacgacg       420
     caataataag tttgctacaa caacaacaac aactcttcga gcagttggcg gcaaatcgag       480
     ccactgcaaa catgtcgaga cctgaaggag gagacgccta cgcggcgaat tcaggtagtg       540
     ctcaaatggt aggggcatca gctcaaagcg aattgcctaa aattcaaatt aaacggttcg       600
     ctggcaatta ttcagagtgg ccagctttca aagacatata tgagagcaca attcacaaca       660
     aggcgaattt gacaaatacg caaaaatttc atcatttgaa atctcttctg atcgacgagg       720
     ctgcgaatct ggtacgacat ttggctatta cggattcagc ttacaacact gcgtgggagc       780
     gacttaatga aagatataat cgtccacggc atatcgtgaa ttcactattg gagcagttta       840
     tgaagctgcc aacaacaaca aggtcggata cagcaacatt acggaaggtg tcagacggtg       900
     caaatgaaat agtgcgtggt ctggatgcca tagaggaaac aggacgagac tgttggatca       960
     tctacttgac gctggagaag ctggatgcgg atactcgacg caggtggatc gagcgcagtg      1020
     tggagacaga ctcacccaca ctggaggaat tcttcaaatt tttggatgca cgttgcgagg      1080
     aactagagct cagcaagcgt gaaacaatcg gaggcaagac tacagcctca atcggtgaca      1140
     agacaaggaa ggtcacacat tcgctggttg tacttgaagg aaacaagtgc agcaaatgtc      1200
     attctacaga gcatcgtctg tatggatgcc aacaattctt ggatatgtca gcaggacaga      1260
     gggtttcgtt tgccaaggaa aacgctctat gttacaattg tctgaatcct ggtcatgggg      1320
     tcagaaaatg caaatctacg ttcaagtgca gacaatgtaa aggtcagcat cactcactgt      1380
     tgcacctgca acgcacgcaa caggctattg gaacaatctc tcaaagtggt gaggatcagg      1440
     aggatcctag cgcacacatc tcaacagtga ctacgagtca catcgcacaa gcagaaggtt      1500
     ctgcagcaat tgtatgtgca caaggcagtg caaattcaca acaatcaact ggatggaaca      1560
     ggagcacctt gccgacggcc atggtcaacg ttcgcaacgc aatgggagat ttggtagcat      1620
     gccgactcct attggacacg ggttcagaac tgtcgtacat atctgaacgc tgtatacaaa      1680
     cacttggttt ggctcgtacg ccatcaacca aaggggatgc agcactataa gcatccagtc      1740
     ccgtatttcg caagatcagc tggtagtcca ggctcatgtg cttggaaaaa ttacgtcatc      1800
     attggaaagg caggccatcg acgcgtctgc acttcgagtt ttcaacgatc tgcaattggc      1860
     agattcacaa tttagcacaa atggtccaat tgacattctt ttgggcagcg aacacgtttg      1920
     gagtgttata actgggagaa agatctacga cgacaaagga aagctcattg ctatatcatc      1980
     aattttcgga tgggtaatta catcactgct ttcataacgc gcatgcagcg ctacggcact      2040
     caaaacgaca atcgacatcg atgctcatct cagaaggttc tgggaactgg agagcataca      2100
     acgcaaggca gaagttcaac ctgaagacga ggaggtggag aaacactttc ttgcaacaca      2160
     cactcgggac gaacaaggag cgctgcagag gttcaaatca gttgaacgac gtttggcgca      2220
     gaatcaacag ttacgtaacg attacgtaaa gttcatgagg gaataccagg agctaggaca      2280
     tatgcgagaa atctcaccga gcgaaattcc caagggtagg aatttctacc tgccacatca      2340
     tcccgtattg ggtcggaaac ttagagtggt tttcgacggc tcatatcaag acgccaaagg      2400
     catggcgtta aacgacacgc tctcgatcgg accgagtatt cagcgagacc tgtttgctgt      2460
     gtgcttgcga ttccgtatgt acaaatacgt cttttcagcg gacatagtca agatgttccg      2520
     tcaaatctgg gtgagcgaaa aacatagaga ctatcagaga atcgtatgga gagaggatcc      2580
     gtcagatcct atcaagcact tccaactatg cacggtgacg tatggaacat catgcgcacc      2640
     atttcgagca gtcagagtgc tagagcaact agctgctgac cataagcacg agtttccgaa      2700
     cgcagaaaaa atcgtgttgg aagatttcta tgtcgacgac gttctcactg gagcaaatag      2760
     tgaggatgag ctgctacgca tcagggacga actcgtccaa ctgatgtcct gtgctaatct      2820
     agagctcggg aaatgggtat cgaataccaa acgcatcgaa tcggaggata acacggattc      2880
     ctcacaatca tcagtcaaag tgctagggct gcattggcac cctggagagg acacattgtc      2940
     gtacaatgta aacctatcga aatatcctag ccgaatggtt aacgacgatg gaaccatttc      3000
     ggtcgccgta tttgcagcaa aaacaagagt ggcacctttg aagcagcagt ctttgccgcg      3060
     cctagaacta tgtggcgcac ttatactgag tcaacttctg caatccataa aagctggact      3120
     aatacacaac gacgtatcga tctacgcatg gagtgattcg acgatagtcc tgtcatggct      3180
     atcgtattca ccagcccaac tcaagacgat tgttgggaac cgcacatctg aaatcctcga      3240
     aaccatcccg aagcatgcat ggcggcatgt agactcaaaa tcgaacccag cggattgcgc      3300
     aacccgtggc ttggaagtat ccaagctcat tgacttccaa ttatggtgga agggtccttc      3360
     atggctgagg gacaaggaac aattcttggt gaaattgaac aatactcata actgtacttc      3420
     tctttcagac aaacgcatac aagacgaagt caaaagtaac tgcctagctg cgcagacgac      3480
     tgtcacgacg gacaacccat gggataagct tctcaatcgc aactcatctt ggctgaagct      3540
     tatacacaca cttgcttacg ttttgcgctt cattcatcgc atgaagcacc catcttcgaa      3600
     acaaacatcg aattctctaa cattcgatga gatcaaggca gcaaggattc gatggctgca      3660
     acacgctcaa gctggttttc aacaggagat ccagttacta cgcgcaaaca aggctctagg      3720
     gaaccaatct caattggtca agatctcacc aatcatcgac aaggacaacc tgctaagagt      3780
     aggtggacga atccaacatt cgcagttgtc agcagaggcg aagcatcagc agcgtcctaa      3840
     gtggaccatg acaaccccta acatttcgat tggcagcgtt gcgctcgtca aggagtccaa      3900
     cacaccacca gcattatggc atctagcgaa ggtgatcgac actttccaag gaaaggacaa      3960
     tatggttcga gcagtccgaa tcatccggct caaaacccgg ccaataacga aaattgcgaa      4020
     actactcagt tcagaaaccg tgtttcaggg tggcccggga                            4060
//
ID   BEL-9_DAn-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   AAPP01016011;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DAn_;
KW   BEL-9_DAn-LTR; BEL-9_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-224
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016011; Positions   26846   27069.
XX
SQ   Sequence 224 BP; 72 A; 50 C; 30 G; 72 T; 0 other;
     tgtttaggaa tggactatcg atacatagtt tataagttat cccatattgt catctttata        60
     ttttctatac caactagctt tacaatccac aacatgtatg cacacacaca cctatcgtta       120
     agttccacaa atgtaaattt tcttagtacc aattagacag cgaaactgac aagaacatat       180
     aactctacag tccactactc attcgtcttg ccggttgggg atca                        224
//
ID   BEL-9_DAzt-I repbase;    DNA;    INV; 2416 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-9_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2416
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 774-774 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           365..2413
FT                 /product="BEL-9_DAzt-I_1p"
FT                 /note="DUF1759, and retropepsin."
FT                 /translation="MSSDGTPSPIAVDSPLSLNVDIAYYKRKVQAMLSAAR
FT                 RIGNAVGKEKIGGLRXEELNVRLNSLLDLVASFNEHHNALERIDLDEIGSP
FT                 LRDEFDECVVMLETSIRHELNNRQPTMLPCSTMPTDHIAEAPSTIVVQHRP
FT                 RLPELKLPEFGGGYSQYSAFWSMFSSIIDKDPDLTNVEKLQHLRSCLKGPA
FT                 LDTISSLEFNQASYPIALDLLNKRFNNRRLIFQKHVADILSVQRIEEASVS
FT                 QLRVLADTAIANLRALKNLGTKEQVADCIVIQSLLQRADSATRAKWEETSS
FT                 LDSLSTVEQFTTFLEERCQRLETQEHAKNMYTHSHRKHCLIATSSKPNLCA
FT                 FCGDPEHSIHGCLQFCNLSPRLRYQEAKKLSLCINCLRAGHCQRACRSRSC
FT                 RICGSRHHTLLHFESPSNAPHSILPQLSNLTSAPRLHAIPSRSKSTATSSA
FT                 TSLFAQSHRRDSVLLATAVISVRNSSGTLIPCRALLDSGSQVHFITSSLAQ
FT                 QLRLKTKESEVSVSGLGDSCAMSEGCCVDLQLKSHASNYATTISALVAPTI
FT                 TSNQPNRTVDTTRWNMPSNIHLADEMYYQSQPVDILIGAALFFELLCIGQI
FT                 KLGAGLPHLQETKLGWIVAGEMSQSRVSSSLFPGNPSDVAPRSSXGTFHWD
FT                 RHSVRSICAEDVPWSKKGSAAKKDVEDPCSSTGG"
XX
SQ   Sequence 2416 BP; 591 A; 607 C; 575 G; 640 T; 3 other;
     ttttggtgac cccgacgtga taaacaatta caacaatata aacaaacata aacttataaa        60
     taaaaagcca attttgtcgt tgccttagtc gcataaaacc acggttgttc ggttcctcag       120
     ttgtgcacaa gcaacagtaa cggttctcgc gtcatctgct ttaccttctg cttgctgttg       180
     ttttcgttac ggtttcggtg ctctcagtgt gtatggcatt gttgttgttg gcaaattccg       240
     aactctcgct gctggcctgt gcccgtgtgt tcgagcgctg cgatcgattg tgaagtgcat       300
     ttcaaactgt tcgaagctat tcacaggcta ttaacctcgg cgtttgcctt atcaaacgca       360
     cgcaatgtct tctgatggaa ccccctcccc tatcgctgtc gattccccct tgtctctcaa       420
     tgtggacatt gcgtactaca agcgcaaggt gcaagccatg ctaagtgcag cgcggagaat       480
     tggaaatgcc gtcggcaagg agaagattgg tgggctcaga gawgaggagt tgaacgtgcg       540
     tttaaattct ttattggatc tggtcgcttc tttcaatgag catcataatg ccctggagag       600
     gattgatctt gatgagatag gtagtccctt gagggacgag tttgacgagt gcgtggtaat       660
     gctggagact agcattaggc atgaattgaa caatcggcag cccacaatgc tcccttgctc       720
     aacaatgccg acggaccata ttgcagaggc accatctacg attgtggtgc aacatcggcc       780
     tcgcctaccg gagttaaagc tgccggaatt cggtgggggc tactcacagt actctgcgtt       840
     ttggagcatg ttttcttcca taattgacaa ggatcctgac ctaacgaatg tggagaaatt       900
     acagcaccta cgatcctgct tgaaaggacc agctttagac acgatctcgt cgcttgaatt       960
     taaccaggcc agctatccta tcgcgctaga tttgctcaac aaacgattca ataacaggcg      1020
     tttaatattt cagaagcatg tcgccgacat tctgagtgtg cagcgaattg aagaagcatc      1080
     tgtgtctcaa ctccgggtct tggcagatac cgcaattgct aatctgcggg ccttaaagaa      1140
     tctagggaca aaggagcagg tcgctgactg cattgtgata caaagcctgc tgcagagggc      1200
     ggacagtgcc acacgagcca agtgggagga aacgtcatct ttggatagcc tctccacagt      1260
     cgagcaattt accactttct tggaggagag atgccagaga ttggagaccc aagagcatgc      1320
     taagaatatg tacacccata gtcatcggaa acactgccta atcgcaacta gctccaagcc      1380
     gaatctttgt gcattctgcg gagatccaga acattccata catgggtgtt tgcagttctg      1440
     caatctttct cctcgccttc gctatcagga agctaagaag ctgtccctgt gtatcaattg      1500
     cctccgagca ggccattgtc aacgtgcatg tcgttctcga tcctgtcgaa tatgtggttc      1560
     cagacatcac acactgcttc attttgagtc tccgtccaac gctccccatt ccattctgcc      1620
     tcaactctcg aacttaacat cggctccacg attgcatgcg ataccatctc gcagtaaatc      1680
     tactgcaacg tcatcagcca cgtcgctttt cgcccagagt cacagacggg actccgtgtt      1740
     gctggccact gccgtaatca gtgttaggaa tagctctggt acattgattc cttgccgtgc      1800
     cctgcttgat tctggatcgc aggtgcattt cattacttca agtctagctc aacagttacg      1860
     gctgaagacg aaagaatcgg aagtttcagt atctggtctg ggcgattcgt gtgccatgtc      1920
     cgaaggatgc tgcgtggatc tccaactaaa atcacacgcg tcgaactatg ccacgaccat      1980
     ttcggcattg gttgctccca ccattacgag caatcaaccc aaccgtactg ttgacacaac      2040
     ccgctggaac atgccctcca acatacattt ggctgatgag atgtactacc agtcccaacc      2100
     agttgatatt cttattggag cggctctgtt ctttgagctt ctctgcattg gccaaatcaa      2160
     gttgggagcc ggtctaccac atcttcagga aactaagcta ggatggatag ttgctggaga      2220
     gatgtcccag tcccgcgttt cttcttctct attcccaggt aacccatctg acgtggcccc      2280
     tcgttcgagt katggaacct ttcattggga cagacatagt gtccgaagta tctgcgctga      2340
     agacgttccc tggagcaaga aaggaagtgc wgccaagaag gatgttgaag acccgtgctc      2400
     ttcaacgggg ggagta                                                      2416
//
ID   BEL-9_DAzt-LTR repbase;    DNA;    INV; 403 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-403
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 755-755 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 403 BP; 112 A; 99 C; 71 G; 121 T; 0 other;
     tgttcggcta agcgcctgcc catggcagca caaagagaag catagttact ctctttacta        60
     tataacactc tcaatgcatc gttgctagtg cttccctacg ctctcaatcg ctacatcgcc       120
     ttttccctaa gttcgtcgtc cgacaagagc tgtgagggag gctcatcagc aaagcagagg       180
     gcactcaaaa tttgatcgtc ttcgtaagcg cttgctcgta tcgtcgaata attaactctt       240
     tttcgtttgc actgtgacct gttcatttgt tgcatcactc gcattgtcta ttaacattaa       300
     atcgagaata cacgaaccta atatacacat cgaaatcaaa ccaatttcgt tttaatacat       360
     ttttcgtaaa aatacgctgc tgaagaagct tagtagctca aca                         403
//
ID   BEL-9_DBp-I repbase;    DNA;    INV; 4898 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4898
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 640-640 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           792..4895
FT                 /product="BEL-9_DBp-I_1p"
FT                 /translation="MPRTTSYATTCTTSCIRARLCSTTNTSQATVQDVPTG
FT                 REDQHNQDASRTPSVTVSHIARAHGHNRLHTHKALQKLRTNMGVAKARSDC
FT                 IGFVQNANGTYQAAGYYDSGSELSYISERCINALGLARSSSRILVSGISSI
FT                 KAEATRGITQLNLKSRFTDSSLKITAHVLSKITSSLQRNNIEPSSLKVFDG
FT                 FLMADTDFASVAPIDILLGSDYVWTTLTGKKMHDNMGNLIAISSIFGWVIT
FT                 SVGVNPSPTTTTLFSTCNIDSTLQRFWEIEEVGSYAHKDPHEDTVEKHFLE
FT                 THKRDNDGKYIVELPFKTANPKFADTLQGAXSRFMAVEKRLQRNPDLREKY
FT                 VKFMQEYLSLGHMTEVKXLSNDSGNLFYLPHHPIVGRKLRVVFDGSFKDAN
FT                 GVALNDTLHVGPSIQRNXFAVCLRFRMYRYVFSADIVKMFRQVWVSTDHQN
FT                 YQRILWREHPTAPLKHYQLRTVTYGTACAPYLAVRVLEQLAQDHRDEYPTA
FT                 SRILLEDFYVDDVLTGANREDELLANKNELLQLMSHAKLDLDKWVSNSSLI
FT                 CKPXSRDAISTGNERVQGSIKVLGIYWNPTDDTLMYQTGLTSNPNCTKRQI
FT                 LSDVARIFDPLGLLSPIVVQFKIMFQRLWLLDLDWDSELPPNIAEPWLKCR
FT                 ADLDTLRKLQIPRFVLSKEDSIELHAFSDASTKAYAAAVYCRCRNKDGTYS
FT                 VSLMAAKTRVAPLKQQSLPRLELCGALLLSRLVRSLKEGLRHKEIQVVAWC
FT                 DSTIVLSWLSYPPSKMKTFVANRTSEILETLPRHTWHHVSSKENPADCASR
FT                 GMTTSQLLEFHLWWNGPPWLLNDDEYTAKVQNSETSFKFSDHHAQDELRTT
FT                 AMLTRERMDDSFSAFDDLVERVSSWQKLVHTVGYVLRFIRRLKKTRNRAES
FT                 TTLSFEEIKAARLVCLRNAQACFGEDRMLLQTNQPLRNRSQLSKLAPFIGS
FT                 DDLLRVGGRLRQSKLPEEVKHPILLPKAHRITKLLLEHEHWVNLHPGTSAL
FT                 FVITRQRYWIIGARNLIRKVTHNCIRCFRQRHHTTHQLMADLPSIRITQSL
FT                 PFVNSGCDYAGPIILKDRKGRNAKKSKGYICLFVCLVTSALHLELATDLST
FT                 EAFLAALRRFMSLRGKCAQIYSDNGRNFVGAKRALDEMQQLLASTNHRDLV
FT                 SQTLADEGINWVFIPPYAPHWGGKWESSVRSVKLHLRRIIGNTILTFEQMH
FT                 TLLAQISAVVNSRPLYYTPDTDVTYLSPAHLLIGRSFTTIPEGDLSHIPEN
FT                 RLDYWQGVQALYQGFWKRWHQEYLTTLQQRPKWETPQPNVELGTVVLIKDS
FT                 NTPPASWPLAKVIATYPGADGMVRAVKLKTATGEATRPITKIAILPCSETM
FT                 FQGGP"
XX
SQ   Sequence 4898 BP; 1437 A; 1214 C; 1145 G; 1096 T; 6 other;
     tagaaaagtt tggtccttca gacccggatt gactggaaga ataattcgct aggtattgcc        60
     ttaaatggag gaatacaaac tactggttgc gggccgccgc agactcaagg gtacgatcac       120
     gaggatcgtg tccttagctg agcgtttacc tgcaacacaa tcaaaggatg gaatcgaagt       180
     tttgctggaa cgattagatt ttgcatggag cgaattcgaa aagcttggag atgcattatc       240
     cgttcatgat caggtcgatg ggtatgtaga tccagacgac gacaacgcag atacgaagga       300
     aggtacctga gggcaaggga gttccttgtc tcagcaaagc gctcactgga gccacaaaca       360
     ccatcaacaa gccaatgcaa tgactcaaag ggcaatggag gcgcactctc cagttgctac       420
     aacaacaaca acagatgctg gaacgtatcg ctgtttccga tgcagcaagt acacctattt       480
     caagcaatgg cgtcatggac gcagaaccaa tgcacaatga attaccgaaa attcaattga       540
     aagttctgcc ggagactaca aggaatggcc agcatttcgg ggagcggacg gcaaaagcgg       600
     aaagggaagg acctgtcacc atgttgctgt gaggggactc agtcagaggc aatatcaaat       660
     gagcaaccta gcagcctgcg gctccgagag gttacggcaa cggcgatcaa tggcaaagga       720
     aaaatcggta tgtttcaact gtttggatcg gatattaaaa ggcagtgtga atccaaattc       780
     aactgtagaa catgccacgg acgacatcat acgctactac atgtacaacc agctgcatcc       840
     gcgcaaggct ttgcagcact acgaacactt cgcaggctac ggtacaggac gtaccaactg       900
     gaagggagga tcagcataat caggacgcat ctcgaactcc atcggtgaca gtgagtcaca       960
     tagcacgggc acatggtcac aatcggctgc atacgcacaa ggccttgcag aaattacgca      1020
     cgaacatggg cgtcgccaaa gcacgctccg actgcattgg atttgttcag aacgcaaatg      1080
     gaacatatca agctgccggc tactatgaca gtggttctga gttgtcatac atttcggaac      1140
     gttgcattaa cgcacttgga cttgcacgtt catcatctcg gatattggta tcgggaattt      1200
     cttccatcaa ggctgaggca accagaggga tcacacagct gaatctcaaa tcacgattca      1260
     cagacagctc actgaagatt actgcacacg ttctcagtaa gatcacatcg tctttgcaga      1320
     gaaacaacat cgaaccatca tcactcaagg tgttcgatgg attcctgatg gcggataccg      1380
     acttcgcttc ggtggctccg atagacattc tattggggag cgactacgtt tggaccacgc      1440
     taacgggcaa aaagatgcac gacaacatgg gcaatcttat tgccatatcc tctatatttg      1500
     gatgggtcat cacatcggtt ggagttaatc cgtctccaac aactacaacg ctattctcca      1560
     catgcaacat tgacagtaca ctacaacgat tttgggagat agaagaagtc ggcagctacg      1620
     ctcacaagga tccacacgaa gacacggtcg agaaacattt cctcgagacg cacaaaaggg      1680
     acaacgatgg aaagtatatc gtcgagctac cattcaagac ggcaaatccg aagtttgcag      1740
     acacactcca aggagcacaw tctcgcttca tggctgtaga aaaacggcta cagcgcaatc      1800
     cggatctacg agagaagtac gtwaaattca tgcaggaata cctaagtctt ggtcatatga      1860
     ccgaagttaa gscattgagc aacgattcag gtaacctctt ctatctgccc catcacccta      1920
     tagttggacg aaaacttagg gtcgtattcg acgggtcatt caaggacgca aatggagtgg      1980
     ctctgaatga cacactacac gttgggccga gcattcagcg caacmttttt gccgtttgcc      2040
     tccgcttcag aatgtataga tatgtmttct ccgcagacat tgtcaaaatg tttcgccaag      2100
     tttgggtaag caccgatcac caaaactacc aaagaatcct atggagagag catccaactg      2160
     cgcctttgaa gcactaccag ctacgcactg taacttatgg aacagcttgt gcgccctatc      2220
     tggctgtaag ggtattggag caactggcac aggatcacag agacgaatat ccaactgcat      2280
     cgagaattct tctagaggac ttctacgtcg acgatgtact cactggagcg aaccgcgaag      2340
     atgagctact agcaaataag aatgagctat tacaactgat gtcacacgcc aaattggacc      2400
     ttgacaagtg ggtatccaat tcatcactaa tatgtaagcc cgawtccaga gacgctatca      2460
     gcacgggaaa cgaacgagta caaggttcaa taaaggttct tggaatttac tggaatccaa      2520
     ccgacgacac gctgatgtac caaaccggct tgacatcaaa tccgaactgc actaaaaggc      2580
     aaatcctctc agatgttgca cgtatctttg acccacttgg cctactatcg ccaattgtgg      2640
     tacaattcaa aatcatgttc caaaggctat ggttattgga tctcgattgg gattcggagc      2700
     ttccaccaaa cattgccgaa ccttggctca agtgcagagc agatctcgac acgctacgaa      2760
     agttgcaaat accacgattt gtccttagca aggaggactc gattgagcta cacgccttct      2820
     ccgatgcatc gaccaaggca tatgctgctg ctgtttactg caggtgtcga aacaaggacg      2880
     gaacctattc ggtttcgttg atggctgcca aaaccagggt agcaccactg aaacaacaat      2940
     ccttacctcg actagagctg tgtggagcgc tgctgttaag tcgcctggta cgatcactca      3000
     aggaaggact acgacacaag gaaattcagg ttgttgcatg gtgcgattca actattgttt      3060
     tatcctggct atcatatcca ccatcgaaga tgaaaacctt cgtcgcaaat cgcacttcgg      3120
     aaattctgga aacgttgcca cgacatacct ggcatcacgt aagctcaaag gagaatcccg      3180
     ccgactgcgc atcaagggga atgacgactt cccaactact agaatttcac ctgtggtgga      3240
     acgggccacc atggctgctc aacgatgacg agtacacggc taaggtacaa aactctgaaa      3300
     ctagtttcaa gttttcagac catcatgcac aagacgaatt gaggaccaca gccatgctca      3360
     ctcgtgagag gatggacgac tcattttcag cgttcgacga ccttgttgaa cgcgtctcat      3420
     cctggcagaa gctggtacat accgtgggct atgttctacg ctttatccga cgactgaaaa      3480
     agacacgaaa ccgagcggaa tcaaccacac tgtcttttga ggagatcaag gcagcacgac      3540
     ttgtatgcct gagaaacgca caggcgtgct ttggagaaga ccgaatgctt ctccagacga      3600
     atcaaccact gcgaaacagg tcgcaattat caaagcttgc accgtttatt ggttcggatg      3660
     acctactacg agttggcggg cgcttgagac aatctaaact accggaagaa gtcaaacacc      3720
     cgatactgct gccgaaggct caccgcatta cgaagctgct cctggaacac gaacactggg      3780
     taaacttgca cccaggtaca tcggcactat ttgtaataac tcgtcaacgt tattggatta      3840
     ttggtgcacg aaatctgata aggaaggtaa ctcacaactg tatcagatgc tttcgtcaaa      3900
     ggcatcatac tacgcaccaa ctcatggccg atttgccaag tatccgaatc acacaatcgc      3960
     ttccctttgt caactctgga tgtgattacg ctggaccaat aattcttaag gatcgaaagg      4020
     gtcgcaacgc taagaagtca aagggataca tatgcctttt tgtgtgcctc gtcacttcgg      4080
     cactacatct ggaactcgct actgacctta gcacagaggc atttctagca gccctcagaa      4140
     gattcatgtc tctacgagga aaatgcgcac agatctacag tgacaacggt aggaactttg      4200
     tcggagcaaa gcgagcactg gatgagatgc aacaacttct ggcatctaca aatcacagag      4260
     acctggtatc acagactctg gcagacgaag gcattaactg ggttttcatt ccaccgtatg      4320
     cacctcactg gggaggaaaa tgggagtcct ccgttcgatc agtcaagctg catctgcgcc      4380
     gcatcattgg caacactatc ctgacgttcg agcagatgca caccttacta gctcaaatca      4440
     gtgcagtggt aaactcgaga ccattgtact atacaccgga caccgatgtc acatatctat      4500
     ctccagcaca tctgttgata ggcagatcat ttacaaccat tcctgaaggg gacctgagcc      4560
     acatccctga aaatcgactt gactactggc aaggcgttca agcactctac caaggattct      4620
     ggaagcgctg gcaccaggaa tacctcacta cgctacaaca acgtcccaaa tgggaaacac      4680
     cgcagccgaa tgtggaattg ggaaccgtcg tcctcatcaa ggattcgaat actccaccag      4740
     cttcctggcc actggcaaag gttatcgcaa cgtaccctgg agctgacggt atggttcggg      4800
     ctgtcaaatt gaaaactgct acaggagaag caactcgacc cataaccaag attgctatac      4860
     taccttgttc agaaacgatg tttcagggcg ggccggga                              4898
//
ID   BEL-9_DBp-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-245
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 641-641 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 245 BP; 58 A; 55 C; 48 G; 83 T; 1 other;
     tgttgagaaa cggactccat tctggcggcg ttgccagtgt tcgggttgcc atggcaatgc        60
     agatcgacgc gtcgtctttc ttagtgttag ttttttcttc tttatacaca ttcsggcgct       120
     gcgtcgcttt tagtttttta agttacttat tcttcagcag tgaatccgtg aacacacagc       180
     atagtacata cagtccactt caataaaata tttggaaaat caacatcgca ctacgtttct       240
     catca                                                                   245
//
ID   BEL-9_DEl-I repbase;    DNA;    INV; 6278 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6278
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 439-439 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. This consensus likely includes 5'
CC   LTR and is 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1031..6214
FT                 /product="BEL-9_DEl-I_1p"
FT                 /note="DUF1759, DUF1756, reverse transcriptase,
FT                 peptidase A17 and integrase."
FT                 /translation="MGKEEEPNLAAGEAKLTHLRSQRSTIERHIENIHGKV
FT                 IADGANEEIPVLECRLQILESHYRQLCQIQTQIESLRSTDNNRAEIDERFI
FT                 AARVSIISLIQSRQRQGPADQSVFETTLAGSHHTRLPKQKLPSFDGKYSQF
FT                 KRFITSFNNLVHNDSSLAQMDKFNYLLGCLSGPALEVVQAFQISEDNYPKA
FT                 LERLKSRYDNDVLIFLDCISSLFALPTLAKPDPSQLQHLVDKASAIRGSLL
FT                 SLGSAEDIMNNVMIHVILSKVDSQTKAKYNEQQTFEQLPSWDECCKALNRR
FT                 CQVLESQNGDVRKSDQRDQKLKSKTHISQNSFVTTNVDCFYCNSSAHFISS
FT                 CKAFADLAIQQRQELAKKAGVCFNCLRNSHQIKDCRSKSRCKICRSSHHTL
FT                 LHQLQPERISASNINHIERQVTNQANLQNLARHDPRPHNNVTLIARTVKRG
FT                 IIPTAVVLIRDKFGQFHPVRALLDSCSEVNFITEETSKRLQLDRFHVQQEV
FT                 SGIAEVRQRIHYTVVATIKSRTCPFEWSSTFSTIKTICAKQPEESVYVPNW
FT                 KLPEGLILADPQFHVSSKIDLLINTEGFFEAIREGKISLGENLPSLVNTAF
FT                 GWIVGGNIAVGKPTQNQLCNVIQEKASLYKLVNQFWEIEECKMGKGILTEQ
FT                 EKQCEEYFLQTVSIQEEGRIQVRLPFKDTPDKLGNSFDQALKRFMLLERRL
FT                 NKNPQLKQSYVNFMEEYLALGHMSQTESVDRAKPHFYIPHHCVLRPESLST
FT                 KLRVVFDASAKTTSGKSLNDILLVGPTIQADLIITLLKFRLNKFALTGDIV
FT                 KMYRQFSVHEEDRNFQLILWRGDSTNEIKTYKLNTVTYGMSAAPFLAIRAL
FT                 RYSAEINGKDCPLGASVLHSDLYVDDVLTGADTLTELMEIKEQLTKILGRA
FT                 RLQLAKFSSNSKDIVERSQDEIFIELNDQEFTKTLGVAWKPNADVFVFHPK
FT                 VVLDAPVTRRSVLSAIARIFDILGLISPIIIRAKIFLQDLTLKRLPWDTCI
FT                 NEKQLAMWTEITDDLRVLENLTVPRYVLTAKSETCEIHGFADASERAYGCC
FT                 LYIRVQNETKIGINLLMAKSKVAPIRAQSLPKLELCAALLLSRTWRKIAGL
FT                 LKPYLSSVYFWTDSTIVLRWMTMHSSQLQCFVANRISELQENNDDIIWKHV
FT                 PSAKNPADIISRGCRAEDLWTNMWYTGPAFLREPKEKWPVLSGALPEPIEV
FT                 RNRVVLQCASAEESILESIIDNSSSYIKIVRILAYVYRAINNVPAAKHLKG
FT                 KDVTHIPAREMEQTFWKIISHIQRNVYSSEILALRKGKPLQPSLQTLTPFL
FT                 QETTSGIVIMRVGGRLINSELPFDSKFPAILPKHHRFVYLYIEYLHRSNHH
FT                 AGPKALLAILRHRLWIINARAVIRKLVRNCIHCFHYKPQLMKQIMGDLPAD
FT                 RLRQNRPFLISGVDFCGPFFTSYRIRGKPPYKTYAAIFVCFTSKAIHVELV
FT                 TELSSVAFLLSVRRFVARRGIPLKLYCDNGTNFVGASSRLKEFKDQMLNDV
FT                 SLNFLHSYSSCKGFEFCFIPPRSPHFGGIWEAAVKSTKTLVLKTVSNANLT
FT                 LEELQTVFIEVEAILNSRPIAPASDDPNDDEAVTPAHLIIGSSLLAAPDER
FT                 LFNAMDPKGMRYLDRWQRVAYLKQQFWHLWHRDYIRSLQQRTKWPIRQPNL
FT                 EVGQLVIVQEDNMPPQQWLLARVTNVITGRDGAVRVADLKTSKGTMRRPIH
FT                 KLALLPAA"
XX
SQ   Sequence 6278 BP; 1980 A; 1391 C; 1278 G; 1629 T; 0 other;
     tgtcggagga gatctattgt tataattata agttttgaat ttgaatttaa cgtaactgaa        60
     attatgtagc aaccacacac ggttgcattt aacattttac caacactgcg ccacgcataa       120
     cattctgtaa acttaagcca tatttaatgt aagcgcggaa gcgcagctca ctttgctttt       180
     gtcgattacg ctaacaagac aattttacaa cttgaagatt aataaaacac atgtattgcg       240
     aaaatacaca tcagaacaca acacgagact cagagcatta tcaatcgctc atggatgacg       300
     gaaagtagcc agttagctgc tacattaatg gcgaccgtga caggactagg aataaggaga       360
     agtattcgtt cattttcgtc attcgagcgt catttgtttg catgagtctc tgattattaa       420
     tcacgtgcag gttatggtgg cagttgtatg tgaataagct aaataagctt tcagctcgag       480
     tggagtactc gcaccaacac aacggtggta cattcatcga catcaacacg gacacataca       540
     ctgggctcac cctaacctga aacccagcgt gggaactttg gtcaaaccag ttggccacaa       600
     gcggagaagc taaacagtct tctagctcga gtggagtact cgcaccatat caaaggtggt       660
     acattcatcg acatcatcac ggaaacatat agagggctca tcctaacctc aaatccaacg       720
     tggccgagaa cattcggaaa acaggagagc atcaacggct gcgccagctg aggaacgcaa       780
     tcatcgcaaa tcatctataa atttatcatt gaccctgtag cttgtggagt aaatatcagc       840
     atttcacccc aatgacaaag gctacacgtg gaattcaaca tcacacacac catctcacgc       900
     atacgcattt gtaaacatca aatcgcaagt atacattctc gattatatta aagaaaatcc       960
     tgtatactcg gcgttaccga gcttatcgtt ataaaacaca cattctgcgt cggttacggc      1020
     aatattaggc atggggaaag aagaagaacc taatttagct gccggcgagg caaaactaac      1080
     acatcttaga tcgcaaagaa gcaccatcga acgccatata gaaaacatac atggcaaagt      1140
     catagctgat ggagctaatg aagaaattcc agttctcgag tgtaggctgc aaattctaga      1200
     atcgcattat cgacagttgt gtcagattca aactcaaatt gaatctctaa ggtctactga      1260
     taacaatcgg gcagaaatag atgaacgttt catagcagct agagttagca tcatatcact      1320
     tatccagtca agacaacgtc aaggccctgc agatcaaagc gtcttcgaaa caacgttggc      1380
     tggatctcac cataccaggt tgccaaagca gaagcttccc agctttgatg gcaaatactc      1440
     tcagtttaag cggttcatca cttcattcaa taatttagtt cacaatgact cttccctcgc      1500
     gcaaatggat aagtttaatt atttactagg ctgcttatct ggtccagcgc tggaagtagt      1560
     tcaggcattt cagatttcgg aagataacta tccaaaggct ttagagcggt tgaagtcaag      1620
     gtacgacaac gacgtgctca tatttctgga ctgcatctct agtttattcg cgcttccaac      1680
     tctagcgaag cccgatcctt cacaattaca gcatctcgtt gacaaagctt cagccattcg      1740
     cggctctcta ctatcattgg ggagtgcaga ggacattatg aataacgtaa tgattcatgt      1800
     gattttatca aaggttgaca gccaaacaaa ggctaaatac aacgaacaac aaacattcga      1860
     gcaattaccg tcttgggatg aatgctgcaa ggctttaaat cgtagatgcc aggttctcga      1920
     aagtcaaaat ggtgacgtta ggaagtccga tcaaagggat caaaaactca agtctaaaac      1980
     acatatatct caaaattcat tcgtgaccac aaacgttgat tgtttttatt gtaattcaag      2040
     cgcacacttc atcagtagct gcaaagcatt tgcagactta gcaattcaac aacgacaaga      2100
     gttggccaag aaagcaggcg tttgctttaa ttgtcttcga aattctcatc agatcaagga      2160
     ctgccgatct aagtctagat gcaaaatctg tcgcagttca catcatacac tacttcacca      2220
     actccaacca gagcgtatat cagcatcaaa cataaatcat atcgagaggc aagtcacgaa      2280
     tcaagcgaat cttcaaaatt tagcaagaca cgatccaagg ccacacaata atgtcaccct      2340
     aatagctcgc actgtaaaaa ggggcattat tccgacagca gtcgtcctaa tcagggacaa      2400
     attcgggcaa ttccatccag ttcgcgcttt attagactcc tgttccgaag ttaatttcat      2460
     aaccgaggaa acatcaaagc gtcttcaact agacaggttt catgtacaac aagaagttag      2520
     tggaattgct gaagtcagac aaaggattca ttataccgtg gtcgcaacta taaaatcgcg      2580
     tacctgtccg tttgaatggt cttcaacgtt ctcaacaatt aaaactattt gtgcaaaaca      2640
     gcctgaagaa tcagtttatg ttccaaactg gaaattacca gaaggcttaa tcctagcaga      2700
     ccctcaattt catgtttcgt caaaaatcga tcttcttatc aatacggaag gtttctttga      2760
     agcgattcga gaaggaaaga ttagtctagg agaaaactta ccaagtttag taaacacagc      2820
     gtttgggtgg attgtaggcg gcaacatagc ggtaggaaaa cctacacaaa atcaattatg      2880
     taatgtcatt caagaaaagg cctcactcta caaactcgta aaccaatttt gggaaatcga      2940
     agagtgtaaa atgggcaaag gcattctcac tgaacaagag aaacaatgcg aggaatactt      3000
     tctacaaaca gtctcaattc aagaggaggg tcgaatacaa gtcagacttc cattcaagga      3060
     cacccctgat aaactaggaa attcattcga tcaggctctt aaaagattca tgttgttgga      3120
     aaggagactc aacaaaaatc cccaactaaa acagtcatat gtaaatttta tggaagaata      3180
     tctcgcacta ggacatatgt cacaaactga aagcgtggat cgtgctaagc cacactttta      3240
     catcccgcat cactgcgtct tacggccgga gagcctgtca acaaaactgc gcgtggtttt      3300
     tgacgcatct gccaaaacca cctctggaaa gtcgctcaac gatattcttt tggtaggtcc      3360
     cacaatacaa gcagacctca tcataacact tttaaagttc cgtcttaata aattcgcact      3420
     aacaggagac attgttaaaa tgtataggca gttttctgtt cacgaagaag atagaaattt      3480
     tcaattaatt ctctggcgag gagattcaac taacgaaata aaaacttaca agttaaatac      3540
     cgtaacgtac ggtatgtcag ctgctccgtt cctagccata cgagctttac gttacagcgc      3600
     agaaatcaat ggaaaggact gcccactcgg tgcgtcggtg ctgcatagcg atttgtatgt      3660
     ggacgatgta ttaactggcg cagatacctt aaccgaatta atggaaataa aggaacagct      3720
     caccaaaata ttaggtaggg ctagattaca actcgcaaag tttagcagca attcaaagga      3780
     catagtcgaa agatctcaag atgaaatatt catagaactc aatgatcagg aattcacaaa      3840
     gacccttgga gtagcatgga agccaaacgc cgatgtgttt gtgttccatc ctaaggttgt      3900
     actcgatgct ccagttacta ggaggtcggt gctatcagcg attgctcgaa ttttcgacat      3960
     attagggctt ataagtccta ttataatacg tgctaaaata tttcttcaag atctcacact      4020
     gaaaaggcta ccatgggata catgcatcaa cgaaaaacaa ctcgccatgt ggaccgaaat      4080
     caccgatgat cttcgtgtgt tagaaaatct tactgtaccg cgttatgttc tcactgcaaa      4140
     atccgaaacg tgtgaaatcc acggctttgc ggacgcgtcc gagcgggcgt acggttgctg      4200
     tttatacatt cgtgtccaga acgaaacgaa aattgggatc aatcttctga tggccaagtc      4260
     taaggttgca ccaatccgcg cacagtcgtt gcccaagctg gagctatgcg ctgcgttact      4320
     attgagcaga acgtggcgaa aaattgcagg attgctaaaa ccttatctct caagtgtata      4380
     cttctggacg gactcaacta ttgtccttcg ttggatgaca atgcattctt cacaattaca      4440
     atgtttcgta gctaaccgaa tttccgagct acaagagaac aacgacgaca ttatctggaa      4500
     acacgtccct tccgcaaaaa acccggcaga tatcatatca cgaggatgtc gagccgagga      4560
     tctttggacc aatatgtggt atactggacc agcgttcttg agagaaccaa aagaaaaatg      4620
     gcctgttctt agtggagctc ttccagaacc gatagaagtg cgaaatcgag ttgtactgca      4680
     atgcgccagt gccgaagagt ctattttaga gtccattatc gacaacagtt catcatacat      4740
     aaaaatagtt cggattctcg cttatgtcta ccgagctatc aacaacgttc cagcagctaa      4800
     acacttaaaa ggaaaggacg tcacacacat tcctgcgcgc gaaatggaac agacattttg      4860
     gaaaattata tctcacattc aaaggaacgt gtattcgtct gaaattcttg cgttaagaaa      4920
     aggaaagcct ctgcagccaa gtttgcaaac gcttacacct tttttacagg agactacatc      4980
     aggaatcgtt ataatgaggg taggaggaag acttatcaat tccgaactac catttgactc      5040
     caagtttcca gccattttac caaagcatca taggtttgtg tatctttaca ttgaatatct      5100
     tcatcgctca aatcatcatg ctggtcctaa ggcactgcta gcaatcttgc gtcatagatt      5160
     gtggataatt aacgccagag cagtaattcg aaaacttgtt agaaactgta tccattgctt      5220
     tcattataag ccccagttga tgaagcaaat catgggagat ttaccagccg ataggttaag      5280
     gcaaaatcga ccatttttga tttcgggcgt agacttctgc ggcccatttt tcacaagtta      5340
     taggattagg ggtaagccgc cctacaaaac ctatgccgca atctttgttt gctttacatc      5400
     aaaggccatt cacgtagaac tcgtgactga gttgtcttcg gttgcattcc tgctgagtgt      5460
     ccgccgtttt gtcgctcgta gaggcatccc tctaaaattg tattgcgaca acggcaccaa      5520
     ctttgtcgga gcctcatcaa ggttaaagga attcaaggat caaatgctta acgacgtatc      5580
     attaaacttt cttcattcgt acagtagttg taaaggcttc gaattctgtt ttataccccc      5640
     caggtcaccc catttcggtg gaatttggga agccgcagtc aaatcaacga agactttggt      5700
     attaaaaacg gtttcaaatg ctaacttaac tctagaagag cttcagaccg tattcataga      5760
     agtggaggct attctcaact caaggccaat agctcccgca tctgatgacc cgaatgacga      5820
     cgaggcagtc actccagctc atctgataat tggttcaagc ttactagccg cacctgacga      5880
     aagacttttc aacgccatgg atccaaaagg aatgcgctac ctcgatcgtt ggcaaagggt      5940
     tgcttacctc aagcaacaat tctggcacct ttggcatagg gactacatac gcagccttca      6000
     gcaacgaacc aagtggccaa tcagacagcc aaacttggag gttggccagc ttgtcattgt      6060
     tcaagaggat aacatgcctc cacaacaatg gctccttgca agagtgacca atgttatcac      6120
     tggacgagac ggagccgtgc gcgtcgccga tttgaaaact tcaaagggta ctatgaggcg      6180
     tccgattcat aaactcgctc tcctccccgc agcttaatct taaagaatgg ttctttaacg      6240
     gggggagaat gtcggaggag atctattgtt ataattat                              6278
//
ID   BEL-9_DMo-I repbase;    DNA;    INV; 5912 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-5912
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2956-2956 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           562..1578
FT                 /product="BEL-9_DMo-I_1p"
FT                 /translation="MENLRTLLGARGRLKATITRISGYAEHPPEGCTFYDI
FT                 DTKLDTLVQAWKQFVNLGDELYKYEDVQGYVDPASDNNVYEERFERACALL
FT                 KTLHAEYKPHKLEEANTTSNVLGEVDNSPIQGILQQIQQQSHMQIQQLQQQ
FT                 SQMQMQQMQQMQMETMEHLMQRLLPQQVDNESPSGSQQGAGPSVKDWELPR
FT                 IHITPFDGDYKEWHAFKGLFDSAVHSKTTLTNIQKYHHLKSCLKGEAAKLI
FT                 QHLPLADANYEIAWNSLVDRYEKPRYLVNVLLDTFTGLPKVADQNPASLRS
FT                 LTNEAGTVIRALDASGQTDRDCWLIYLLMAKVDDTTRREWYEKGVKI"
FT   CDS           1563..5909
FT                 /product="BEL-9_DMo-I_2p"
FT                 /translation="KRSQDIANPTITQLLKFLDARCDRLELSQSATTTSSK
FT                 PRQDRGTRNAHALLATSERCAKCNKEHALMACTQFLDLSIQQRYAFAKSKH
FT                 MCFNCLRLGHGVSACTSKSSCKHCKRRHHSLLHFDQRNTKDKDDPQQHQQD
FT                 DSNEAPGASTVVALTNAVNTSKGGKGANMRSTLPTAQVYVRNSRGQDVVCR
FT                 ILLDCGSELSYVSERCIQTLGLARSHSRISISGISSIKAETTRGLCSLHIK
FT                 SRVSDASLVVKAHVLGNITSTLMRETINAADLSMFSGHTLADAAFNTNASI
FT                 DILLGNDHIWTVLTGDKLCNLQGNTIAIDSIFGWIITSVAGACTTTTTSLL
FT                 ATMDINTLLQRFWELEELPSFTSANKEDELVETHFVQTHSRNAEGRYIVEL
FT                 PFKQGNPEFADTYHGAKSRFLAVERRLMRDAALRSKYVQFMREYIQLDHMK
FT                 EVDAEEDATSKKVFYMPHHPVLGAKLRVVFDGSFQDQDGRSLNDALHIGPC
FT                 IQRNLFNVCMRFRMHKFVFSADIVKMFRQILVASKHQDFQRILWREHPSAP
FT                 LKHFRLCTVTYGTASAPFLAVRVLEQLAKDHEHEFPRAAKILLEDFYVDDV
FT                 LTGAMTEEELIDIQTELVALMSRAQLELGKWISNSTRLCTAQGDRVNMSTA
FT                 TSKVLGLHWDPGEDNLAYNIVLSETASCTKRQVLSDVAHIFDPLGILAPVV
FT                 VQFKILLQELWLLDLDWDSELPMKQAHSWQMYRKDISSLQQLKIPRFIDSH
FT                 MDHIELHAFSDASLKAYSAVVYSRVEYSDGSIGVYLVAAKTRVAPLKLATL
FT                 PRLELCGALLLTRLVKAIQASLGKKEVKVYAWCDSTIVLSWLSNQPCKLKM
FT                 FVANRTAEILETIPRDAWRHVSTKENPADCASRGMLAGDLLKFDLWWKGPS
FT                 WLHDSQEYLEMLRRSKFCCSIVPPAAEAEFKANILTVTEDMASSPFDALLT
FT                 RVSSWLRLIRIIAYVRRFVHRVRSRNSLHSAALTFHEIDAARKFCLXQAQN
FT                 AFDVDRQRLLKKQPLQHRSKLSKLAPFVDQDGLIRVGGRLENSYLSRDAKH
FT                 PIVLPNHHRLVELLXKHEHQFNLHPGVSAMFAIIRQKYWILGSRNLIRRIT
FT                 HGCLNCFKQRHHTTQQLMANLPATRVRQAFTFEHTGVDYAGPILLKVHKGR
FT                 NPRKEKGYICLFVCMVTSALHLELATDLSTDTFLAALRRFMARRGKPAEMY
FT                 SDNGRNFVGAKRTLNEMSQLHTSREHNEVVARKLAEQSIKWNFIPPYTPHW
FT                 GGKWESAVRSVKLHLRRVIGNTVITFEQMRTLLTQIEAVVNSRPLCATSDT
FT                 EIGFLSPAHFLIGRTYTAVPDGSYAEVPTNRLGYWQHTQAMLQGFWKRWQQ
FT                 EYLTALQQRPKWSTKMPNISLGDIVLIKDSHTPPATWNLGRVIEVYPGEDG
FT                 LVRAVKLKVVSGEIIRPITKIAALPHSETEFQGGP"
XX
SQ   Sequence 5912 BP; 1684 A; 1329 C; 1398 G; 1499 T; 2 other;
     taaatttggt ccttcgagcc ggatccgttg ggcattgcta ctgaatgctc acttggagtt        60
     gttggaaaca gcacgcacta ttggaaaagt gacgtgtttt gtcttgtatt gtttttgctg       120
     ctggagacgc agcatttgca aattcttgaa attacgtatc gatatttggc atcatacgta       180
     ataaacagca cgcactattg gaaaagtgac gtgttttgtc ttgtattgtt tttgctgctg       240
     gagacgcagc atttgcaaat tcttggaatt acgtatcgat atttggcatc atacgtaata       300
     aacagcacgc actattggaa aagtgacgtg ttttgtcttg tcgtgttttt gctgctggag       360
     acgcagcaat tgcaaattct tggaattacg tatcgatatt tggcatcata cgtaatacgc       420
     agtacgcact attggaaaag tgcggtgatt tgtcttaatg gtttgttcgg ctgctagaga       480
     cgcagcaatt tcatcacatt aatttaatac ctggctattt tggacaactt ggattgactg       540
     ctggcaacgc agcacgctgc aatggaaaat ctacgtactt tactgggagc cagaggtaga       600
     ttgaaggcaa caattactcg tatttctgga tatgcggagc atccacctga gggctgcacc       660
     ttctacgata ttgatacaaa attggacacg ctggttcaag cttggaagca gtttgtcaac       720
     cttggtgacg aactttataa atatgaagat gtgcagggat acgtggatcc agcaagtgac       780
     aacaatgtat atgaggagcg ctttgaacga gcttgtgctc ttcttaagac actgcacgct       840
     gagtacaaac cccacaaact ggaagaagcc aataccacat ctaatgtgct tggggaagta       900
     gataattcgc ccatccaagg cattttacaa caaatacagc aacagtctca tatgcaaata       960
     caacaattac agcaacagtc tcagatgcaa atgcaacaaa tgcagcagat gcaaatggag      1020
     actatggagc acctaatgca acgactgcta ccacagcagg tggataacga gtcaccgtca      1080
     ggctcacagc aaggcgcagg accatcagtg aaggattggg aactgccacg gattcatatc      1140
     acaccatttg atggagatta taaggaatgg cacgcgttta agggtctatt cgacagtgcc      1200
     gttcacagca agacaacgtt gacgaatatc cagaagtatc atcatttaaa atcttgttta      1260
     aaaggagaag ctgcgaaact tattcagcat ctgcccttag ccgatgccaa ctatgaaata      1320
     gcttggaatt cattagttga tcggtacgag aagcctcgct atttggtaaa cgtgttgttg      1380
     gatacattta ctggactgcc caaggttgcg gatcaaaacc cagcatcgct tcgatcgcta      1440
     acaaacgaag ctggtaccgt aattcgggca ttagacgctt ctggacaaac ggatcgggat      1500
     tgttggctga tttacttgct catggcaaag gttgatgaca ccacacgtcg tgaatggtat      1560
     gaaaaaggag tcaagatata gcaaatccta cgataacgca gttgctcaag ttcctggatg      1620
     cacgttgtga tcgactggag ctcagtcaat ctgcaactac gacaagcagc aagcctagac      1680
     aggacagagg taccaggaac gcacatgcgc tactcgccac ttcagagcgc tgtgcaaagt      1740
     gcaacaagga acacgcattg atggcatgta cacaattttt ggatctatct attcagcagc      1800
     gatatgcctt tgcaaagtcc aaacacatgt gctttaattg tttgagactt ggccatggag      1860
     tgagcgcttg cacatcgaag tcatcttgta agcattgcaa gcgccgacat cactcactct      1920
     tgcacttcga ccaacgtaac actaaggaca aagatgaccc acagcaacat cagcaggatg      1980
     attcaaatga ggcaccaggt gctagcacag tagtagcact gacgaacgcc gttaatactt      2040
     caaaaggtgg caagggtgca aatatgagaa gtacactgcc aacggcgcag gtgtatgtgc      2100
     gcaattctcg aggacaagac gttgtttgcc gcatattgtt ggactgcggc tcggagttgt      2160
     cctacgtttc ggaacggtgt atccagacat tgggtctggc ccgttcacac tctcgcatct      2220
     ctatatctgg aatatcatca atcaaggcag aaacaacaag agggctctgt tcactacaca      2280
     tcaagtcgcg agtgtcagat gcatctcttg tggtcaaggc acacgtgctt ggaaacatta      2340
     cttcgacact gatgagagaa actataaatg cagcagacct ctctatgttt agcggccaca      2400
     ccctggcaga cgccgcattt aataccaacg cttcaatcga cattttgctt ggcaacgatc      2460
     acatttggac ggttcttact ggagataagc tgtgtaatct tcaggggaac acaattgcta      2520
     ttgattcaat atttggatgg atcatcacat cagtggcagg agcgtgtaca accacaacta      2580
     cgtcactcct agctaccatg gacatcaaca cattgttgca acggttttgg gaactggaag      2640
     aacttccatc gttcacgtct gccaataaag aagatgagtt agtggagact catttcgtcc      2700
     aaacacactc ccgtaatgcc gaagggagat acatcgtcga gctaccattc aagcaaggga      2760
     acccagagtt tgcagacacc tatcatggag ccaagtctcg cttcttggca gttgagcgtc      2820
     gtttaatgag ggatgcagct ttacgatcga agtatgtgca attcatgagg gagtacatac      2880
     aactggatca catgaaggag gtggatgcag aagaagacgc cacttcgaag aaggttttct      2940
     acatgccgca ccatccagtg ctaggtgcaa agctgcgtgt ggtatttgat ggctcatttc      3000
     aagaccaaga tggtcggtct ctaaacgatg cgcttcatat tggtccatgt atacaacgca      3060
     atctcttcaa cgtatgcatg aggtttcgaa tgcacaagtt tgtattttcg gctgatattg      3120
     tgaagatgtt tagacaaatt ttggttgcat ctaaacatca ggactttcaa cgaatattat      3180
     ggagagaaca tccatcagca ccattgaaac acttcagact ctgcacagtt acatacggga      3240
     ctgcgtctgc gccattcctc gcagtccggg tgttagaaca acttgccaag gaccacgagc      3300
     atgagtttcc tagagcagct aagatattac ttgaggattt ctacgtggac gatgtattaa      3360
     caggagccat gacagaggaa gaacttattg acattcaaac tgagctggtt gcactcatgt      3420
     cacgtgcgca actggaattg ggaaaatgga tctcaaatag cacacgacta tgcaccgcgc      3480
     aaggtgatag agtcaacatg tcaacagcaa catcaaaggt attaggacta cattgggatc      3540
     ctggagaaga caaccttgca tacaacattg tattatcgga gactgcaagc tgcacaaagc      3600
     gacaagtgct atccgatgta gcacacattt ttgatcctct gggcattttg gcaccagtgg      3660
     tagtccaatt caagattcta ctgcaagaac tttggttgct tgatttggat tgggactctg      3720
     aacttccgat gaaacaggcg cactcttggc agatgtatcg caaggacatt tcgtcgctac      3780
     aacagctcaa gatacctcgc ttcatagaca gtcacatgga tcacatcgag ttacatgcat      3840
     tctcagacgc ttcgcttaag gcatactctg cggtcgtcta cagcagagtt gagtatagtg      3900
     acggctctat aggagtatat cttgttgctg ctaagactcg cgtcgcacct ttaaaactag      3960
     caacgctgcc acgcctcgaa ctgtgtggag ctctactgct gactagactt gttaaggcaa      4020
     ttcaagctag tttgggcaag aaggaagtga aggtatatgc atggtgcgat tctacaatcg      4080
     tattgtcctg gctgtcaaat caaccctgta aattgaagat gttcgtagcc aatcgtacgg      4140
     cagaaatact tgagacaatc ccacgggacg cttggaggca tgtgagtacc aaggaaaatc      4200
     ctgcagattg tgcatcccga ggaatgctcg ccggtgacct tcttaaattt gacttatggt      4260
     ggaagggacc gtcctggcta catgattccc aggagtattt ggagatgctt cgacgatcaa      4320
     aattctgctg ttctatcgtg ccgccagcag cagaagcgga attcaaggcc aatattctga      4380
     cggtaacgga ggacatggca tcgtccccct ttgatgcttt acttactaga gtatcatcat      4440
     ggctgcgact gattcgaatc atcgcatacg tccggcgctt tgtacatcgc gtccgatcaa      4500
     gaaactcact tcattcagca gccttgacgt tccatgaaat tgacgcagca cgaaagtttt      4560
     gtctagkgca agcacaaaac gcatttgatg ttgatcggca gcgcttgttg aagaagcaac      4620
     cgctgcagca ccgttccaag ttgagcaagc tagctccatt tgttgaccag gatggcctta      4680
     ttcgagttgg aggacgctta gaaaactctt acctatctag agacgccaaa cacccaattg      4740
     tactgcctaa ccatcatcga ctagttgagc tgttastgaa gcatgagcat cagttcaacc      4800
     ttcatcctgg agtttcggca atgtttgcta taattcgtca gaagtactgg atacttggat      4860
     ccagaaacct catccgacga atcacgcatg gatgtctaaa ctgtttcaag cagcgtcatc      4920
     atactacaca acagcttatg gctaacttac ctgccactcg cgtgcggcag gcctttacat      4980
     tcgaacacac tggagtcgat tatgctggac ctatcttgct aaaggtacac aagggacgca      5040
     acccgcgtaa agagaagggc tacatttgtc tctttgtatg catggtgaca tcagcacttc      5100
     atctagaatt ggcaactgac ctaagcacag acacctttct ggcagccctc agacgtttta      5160
     tggcccgccg tgggaagcct gccgaaatgt acagcgacaa tggacgtaac ttcgtcggtg      5220
     ctaagcgcac attaaatgag atgtcacaac tacatacttc acgcgagcat aatgaagtgg      5280
     tagcgaggaa attggcggag caaagcatca agtggaattt cattccacca tatactccac      5340
     attggggtgg aaaatgggag tctgctgtac gttccgtgaa gctacacttg cgacgagtga      5400
     tcggaaatac agtgattaca tttgaacaga tgcgcactct gcttacacaa atagaagcag      5460
     tcgtgaactc ccgtccatta tgcgcaactt cggacacaga aattggattc ttgtcaccag      5520
     cacatttttt gatcggacgg acgtacactg cagttccaga tgggagctac gcagaggtac      5580
     caaccaatcg cttgggatat tggcaacata ctcaggcaat gcttcaagga ttttggaagc      5640
     gttggcagca ggaatactta acggcattgc agcaacgacc caaatggtct accaagatgc      5700
     ctaacatatc ccttggagac attgtactca tcaaggattc gcatacgcct ccagcaacat      5760
     ggaacttagg acgcgtaatc gaagtgtacc caggagagga tggattagta cgggcagtta      5820
     aactcaaggt cgtttctgga gagattatac gacccatcac gaagatagca gctctaccac      5880
     attctgaaac ggagtttcag ggggggccgg ga                                    5912
//
ID   BEL-9_DMo-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-242
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2953-2953 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 242 BP; 76 A; 33 C; 42 G; 91 T; 0 other;
     tgttgaggaa ccatttgtca tttttttgca catttatcat tttttagcat atttgtcatt        60
     ttttagtata atttgtagct ttcattatta tcggcgaatg aagagccgca tcgagatcaa       120
     ttatcggtta agtcgataaa cttatgttag tattcagtaa gcaaacgaac ggacaagttg       180
     agcgtaccag caattggctg ttatagttca tataaaataa agaaatgttt aattattcat       240
     ca                                                                      242
//
ID   BEL-9_DSer-I repbase;    DNA;    INV; 4729 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   BEL-9_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4729
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2006-2006 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           584..4693
FT                 /product="BEL-9_DSer-I_1p"
FT                 /note="DUF1759, DUF1777, retropepsin, reverse
FT                 transcriptase (partial), ribonuclease H."
FT                 /translation="MQRSPRRSARLNGGEATPITTREDQQPVSSETETWPL
FT                 VGVTTAAAIPSPATTEITSASQHGSTAASTANINAREDLTLDLLARIAALE
FT                 KELQQVKALGSVGTANCAPVAVGAHSVASGRPPFWSGPPLATSVEETSCNG
FT                 VGSAPYHSVGGYSASCTLPPPCSGPPPCSGPPLTASTAQTAHGFTLPGVNM
FT                 RNVASVSPLVGSPTILTSNGIQGTYGPRKLPDLPIFGGQPEEWPIFSCAFT
FT                 ETTRAYNCTDLENNQRLLKALKDDAREAVKSLLIHPGNVSAVMEQLRFRFG
FT                 RPEQLIRSQLNNIREVQPISEHNLAKIVPFATRVSNLMAFLQAANAEQHLG
FT                 NPSLMEELVAKLPTSKRVDWAKYAATIQPFPTIVHFSAWLQGYANVLCTVL
FT                 DVEGGEPKRRVLHANIDAKKCDRQDDRHGCCPICGGQHAVTNCQEFIGTPP
FT                 PGRWSMVKRQKLCFSCLRSGHTTRFCNVHRECQINDCRKLHHRLLHDADDE
FT                 QRPQQRGGYSRHNEGNQQPAVSRHSPDRRYLQRDGHRDHEGNQQPAVSRHS
FT                 PDRRYLARDGHRDHEGNQQPAVSRHSPDRKYLPRDGHRDHEGNQQPAVSRH
FT                 SPDRRYLPRDGHRDHEVNRQPAINSPERRAPQEADLPVQRNLSCVDAEGGR
FT                 LLFRILPVTLYGAGRTVNTYALFDEGSSVTMIDEELRRDLGIQGERRQLNI
FT                 QWFGGRASRETTNVVSLKISGIGKSTRHVLRNVYAISSLSLPMQTLSRQDV
FT                 QGVHKXARLPMKPYSNVVPKLLIGLDHGHLGLPMRTRRFGSEGPYAAATKL
FT                 GWVVFGPVKGQFTSPSPRSCLLAVSXDDTVEKMVEDYFDLENFGVKLVSQV
FT                 AASDDMRAQRILEDTTMRVGRRYQTGLLWKDDHVKLPQSHEMAYKRLVNVK
FT                 KKMKRNEQLALEYCRIIKDHVAKGYARRLEPHEAAENSDRIWYLPHFGVEN
FT                 PNKPGKVRLVFDAAAKVGETSLNSALGKGRQDYKSLPAVLFLMITAKLLLR
FT                 EIWRQKIQWDEPLPEEIGKAFAIWRKEMDAVGQFRCPRHYFGHGAVRAIEL
FT                 HVFVDASQSAFAAVAYWRVTYEDDNALVSFVCAKTKCAPMRTMSIPRLELQ
FT                 AAVLGTRLMNTVKEEHSVVINDVVLWSDSKTVLRWIGSTHRRYKQSVGNRV
FT                 SEILDSSKVSHWRWVPTAENAANPSEGGIWERMVQCVKRVLRHTLKEVAPR
FT                 EHVLESFLIEAENVVNSRPLTHLPVEADQEASLTPNDLLKGVANLPDTPGL
FT                 GAELPKECSTRKHWRIARLLRDRPWKRWVLEYLPTLVRHEKWCRRTEPVRQ
FT                 GDMVFICDPALPRREWRKGIVEGVYNGADGVARCATVRKNDDGLSQTMMRP
FT                 VSKLLKF"
XX
SQ   Sequence 4729 BP; 1183 A; 1169 C; 1513 G; 862 T; 2 other;
     actcctttta ttcgcagtcc gatagagact gctaaagcaa cttgggagcg cagccagcgt        60
     cccacgtgtt gatggagaag tcgcagccag cgacaaggag acgcgggtag cgtcagtggt       120
     cgcagccagc gacgaggaga cgcgggtagc gtcagtggtc gcagccagcg acgaggagac       180
     gcgggtagcg tcagtggtcg cagccagcga cgaggagacg cgagtggcgt cagtggtcgc       240
     agccagcgac aaggagacgc gagcggcgtc agtggtcgca gccagcgaca aggagacgcg       300
     agtggcgtca gtggtcgcag ccagcgacga ggagacgcgg gtggcgtcag tggtcgcagc       360
     cagcgacaag gagagcgagc agcgtcagtg gtcgcagcca gcgacaagga gacgcgggta       420
     gcgtcagtgg tcgcagccag cgacaaggag gcgcgggtag cgtcagtggt cgcagccagc       480
     gacaaggaga cgcgggcggc gtcagtggtc gcagccagcg acaaggaggc acaggtacgc       540
     cagttaaagt gcgctaagtc agcgccctat tggaatcggg aagatgcagc gctcacccag       600
     gaggagcgcc cggctgaatg gaggggaagc cacccctata acaacacgag aagatcagca       660
     accagtgagt agtgaaacag aaacctggcc actggtaggc gtaaccacgg cagcggctat       720
     acctagccca gccactacgg agattacatc agcttcccaa catggaagca ctgcagcctc       780
     aactgcgaac atcaatgcca gagaggatct cacgttggat ctcctggcga ggatcgcagc       840
     gctggaaaag gagctgcagc aggttaaagc cctgggaagc gtgggcaccg ccaattgcgc       900
     gccagtcgca gttggcgcgc acagtgtagc gtcaggccgg ccgccatttt ggagcggtcc       960
     gccattagcg acatcggttg aggagacctc atgtaacggg gtcgggtcgg cgccctatca      1020
     cagtgtcggt gggtacagcg cgtcctgcac gctgccgcca ccttgcagcg ggccgccacc      1080
     ttgcagtggg ccgccgctca cagcaagcac tgcgcagacg gcgcatggat tcacactacc      1140
     gggtgtgaat atgcgcaacg tggcatcagt atcgccactt gtcggatccc ccactatatt      1200
     gacgtcgaat ggaattcaag gaacatacgg gccaagaaag ctcccagatc tgcctatatt      1260
     tggagggcag ccagaggagt ggccgatttt cagctgtgcg ttcacggaga cgacacgggc      1320
     gtataactgc acggatttgg agaacaatca aaggttgttg aaggcgctaa aggatgacgc      1380
     tcgcgaggcg gtgaagtcgc tattgattca tccagggaac gtcagcgccg tgatggagca      1440
     gctgcgcttt aggtttggcc gaccggagca gcttatacgc agtcagctga acaacatacg      1500
     agaagtgcaa ccaatttcgg agcacaatct agcgaagatt gttcccttcg ctacccgagt      1560
     gagtaacctc atggctttct tgcaggcggc gaacgcggag cagcatctgg ggaacccatc      1620
     cctcatggag gagcttgtgg ccaagcttcc tacgagcaag cgcgtggatt gggctaagta      1680
     tgctgcgacg atccagccct ttcccactat agtgcacttc agcgcatggt tacagggcta      1740
     cgcaaacgtt ttgtgtaccg ttttggatgt agagggaggg gagccgaagc gtcgagttct      1800
     acatgctaat atcgacgcca agaaatgcga tcgacaggat gatcggcatg gatgttgtcc      1860
     aatctgtgga ggacaacacg cagttacgaa ctgccaggaa tttattggaa ctccgccacc      1920
     gggcaggtgg agcatggtga agaggcaaaa gctctgcttc tcatgcttac gaagtgggca      1980
     cacgacgaga ttctgcaatg tgcataggga gtgccagatt aacgactgtc gcaagttgca      2040
     tcaccgtctg ctgcatgatg cggacgatga gcaaaggccg cagcaacgag gtgggtacag      2100
     tcgccacaac gaggggaacc agcagccagc ggtttccaga cacagcccgg acaggaggta      2160
     tttacaacga gacggtcaca gggaccacga ggggaaccag cagccagcgg tttccagaca      2220
     cagcccggac aggaggtatt tagcacgaga tggtcacagg gaccacgagg ggaaccagca      2280
     gccagcggtt tccagacaca gcccggatag gaaatattta ccacgagatg gtcacaggga      2340
     ccacgagggg aaccagcagc cagcggtttc cagacacagc ccggatagga gatatttacc      2400
     acgagacggt cacagggacc acgaggtgaa ccggcagcca gccataaaca gcccggagag      2460
     aagggcaccg caggaagcgg atttgcctgt gcagaggaat ctaagctgcg ttgacgccga      2520
     gggaggccgc cttctgttcc gtatactgcc agtaacgctg tacggagccg gacggacggt      2580
     gaatacgtac gcgctctttg acgaaggatc ctccgttacg atgatcgacg aagaactacg      2640
     gagggatctc ggaatacaag gggagcgccg acagctaaat atccaatggt ttggaggaag      2700
     agcatccaga gagaccacga acgtagtgag tctgaaaata agtggaattg gaaagtccac      2760
     tcgccatgta ctgagaaacg tgtatgccat ttcgagcttg agcctgccga tgcagacgtt      2820
     aagtcggcag gatgtccagg gtgtgcataa ggakgcgcgc ctgccgatga agccttacag      2880
     caatgtggtg ccgaagttgc tcatcggcct ggatcatgga cacctgggat tgccaatgag      2940
     aactaggcga tttggcagtg agggaccgta tgcagctgcc accaagctag gctgggttgt      3000
     gttcgggccc gtaaaggggc agttcacttc gccatcaccg aggtcctgcc tacttgccgt      3060
     gtcgawggat gatacggtgg aaaaaatggt agaggattat ttcgatttgg agaactttgg      3120
     tgtgaagctc gtgtcacagg tcgcagccag cgacgacatg cgggcacaaa ggatactcga      3180
     agacaccacg atgagagtgg ggcgccgcta ccaaacggga ctactctgga aggacgacca      3240
     cgttaagctg ccacagagcc atgagatggc gtacaaacgg ctggtcaacg tcaagaagaa      3300
     gatgaagcgc aacgaacagt tagctctgga atactgtcgg atcatcaagg atcatgttgc      3360
     aaaaggatac gcgaggcggt tggaaccgca tgaggccgcg gagaatagtg accggatatg      3420
     gtatttgcca cactttggtg tcgaaaaccc gaacaagccc ggtaaggtcc ggcttgtgtt      3480
     cgatgcggca gccaaagttg gagaaacgtc gttaaattcg gcgttgggca aaggacgtca      3540
     ggactacaag tctttgccag ccgtgctctt cctgatgatt acagcgaagc tgttgctgag      3600
     agagatttgg aggcagaaga tccagtggga tgaaccacta ccggaggaga ttggcaaggc      3660
     ctttgcgatt tggcgtaaag agatggatgc cgtaggacag ttccgttgtc ctcgccatta      3720
     ttttgggcac ggagcagtta gagccataga gctgcacgtg ttcgtggatg caagtcaatc      3780
     tgcattcgcg gcggtggcct actggagggt cacatatgag gacgataatg cgttggtgag      3840
     cttcgtatgc gcaaagacga agtgtgcccc gatgagaacg atgtcgatcc cacggctgga      3900
     gctgcaagca gcagttcttg gaaccagact aatgaacact gtcaaggagg agcacagtgt      3960
     agtcatcaac gacgtggtct tatggtcaga ctcgaagacg gtgctgagat ggattggcag      4020
     cacacaccgc cggtacaagc agtctgtcgg caatcgagtg tctgagattt tggattcgtc      4080
     gaaggtttcc cattggcgat gggtacctac agccgaaaat gcggcgaacc cgtctgaggg      4140
     aggaatatgg gagcgtatgg tgcagtgcgt caaaagagta ctgcgtcata ccctaaagga      4200
     agtcgcaccg agggaacatg ttttggagag tttcctgatc gaggcggaga atgtcgtaaa      4260
     ctcgcgtccg cttacccatt tgccggtgga agcggaccag gaagcatcgt tgacgccgaa      4320
     tgacctactc aagggagtag ccaacctgcc ggatacccct ggactgggtg cggagttacc      4380
     aaaggaatgc tcaacacgaa agcactggag gattgctcgc ctgctgagag accgcccttg      4440
     gaagaggtgg gtcctggagt acctacctac gctggtgcgg cacgagaagt ggtgcaggag      4500
     gacggagccc gtccgtcagg gcgacatggt cttcatctgt gatcctgcct tgccccgacg      4560
     agagtggcgc aagggcatcg tggagggagt ctacaacgga gctgatggag tcgccagatg      4620
     cgctacagtg cgcaaaaacg acgacggcct atctcagaca atgatgcgac ccgtctctaa      4680
     acttttgaag ttttgaattg agtgaagcgg ttcttcacgg ggtcgggga                  4729
//
ID   BEL-9_DSer-LTR repbase;    DNA;    INV; 348 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-348
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2015-2015 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 348 BP; 115 A; 59 C; 85 G; 89 T; 0 other;
     tgtcgacgat cgaatattgt aatcgatagg cgtagttagt atattaagaa taacgtaaaa        60
     aatactaatg gattttgagc ccaagagaaa aagggcatac ttttatcgct aagttaaccg       120
     ccaaaattga gcgtcttatt gtcgtgcgag aattaggagg acacactgcg gtaagcgcgt       180
     gtgagagtta taaatgtgta aaaattaagg ttaagttaat ttttccgcag aataaaacga       240
     cgaaaacttc acatctaatt gccggcctcg ggccaagagg cttccctatt gtttggcggg       300
     aactggagat gtggagccgt taaaggcaaa tccaagtgac gcacgaca                    348
//
ID   BEL-9_DTa-I repbase;    DNA;    INV; 4211 BP.
XX
AC   AFFI01008190;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DTa_;
KW   BEL-9_DTa-LTR; BEL-9_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4211
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01008190; Positions    7993    3783.
XX
CC   'TTATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1183..2610,2614..4080)
FT                 /product="BEL-9_DTa-I_1p"
FT                 /translation="MVHNDASISGVDKFNYLLSCLSGAALSVVAPFQVSET
FT                 NYPKALKQLKERYYKKVLIFVEHISSLFDVPMMKRSDPAALRCILDTVSAL
FT                 RESLLSLGSEADVMNAILIHLVLSKIDADSKLSYDRVQEYEVLPTWEDCYR
FT                 SLSRHCQYLESNVKRSSDEKPKERPTQNRRAFVTAQGVCKKCFATDHPLTQ
FT                 CPSFGLLGWQDKFNFIKQSSLCINYLRTGHLASRCPSRSRCRVCQGLHHTI
FT                 LHRTAHPEQPTQIVDHTSQQEREPTHAVSMLSRHSRRALIPTAIVLIRDKF
FT                 GIFQPARALLDSGSEINFISEELAKLLQLRFERQKYDISGIGDVRTQMRFS
FT                 VSTTIRSRLSVDEWHLQFAVAKTLSLNQSERFVDTSQWNIPTEIDLADPGF
FT                 YMPHKIDLLISTQEFFDLPPNGKISLGPGLPCLVNTALGWIVGGKVSDIPQ
FT                 PQVVTCNMARSTELQDALERFWLIEEFDSHHGFTLEEQECERHFLANAKFL
FT                 TSGRVQVSLPFKENPHMLGKSFEIAKSRFLQNERRLNRNPLLKEMYVKFMK
FT                 EYLALNHMQLASDFDSQKTHYVIPHHGVLRSESTTTKLRVVFDASCKTTSN
FT                 LSLNELLMIGPSIQQNLILTLLAFRSHRHALVADICNMYRQFEVSPDDRMY
FT                 QLVLWRESSAAPLELFQLNTVTYGMSCAPFLAIRSLKYIADNFSNQFPIGA
FT                 AVLKEEMYVDDLLTGADSVEELHLKAAEVTSILSKAGLELAKWNTSKIEGN
FT                 GAEFQFKVDTKDVTKTLGMSWQPKLDLFCFRYTLPTLSAITKRSIVSLVAH
FT                 LYDLLGLVSPVVIRCKILVQELWMHRLNWDDPLPPELQSQWKRIEEDLHNL
FT                 QSIEVPRFINSSPRNLSEIHGFSDASQRAYGCCLYLRTYLNGEFKSMPIIA
FT                 KSKVAPIKAISLPRLEFASGALQMAQTQCQHSNWPNGLCSRGQCTSPGMDP
FT                 WSHHQHAFRS"
XX
SQ   Sequence 4211 BP; 1183 A; 1000 C; 900 G; 1128 T; 0 other;
     ttttggcgac cgtgacagga ctctgcattc ggcaagtcct accatcaatc ctgttcacac        60
     tggaaatcat ttactctgca gtcggcggag aaatagattc cagcatctta gaccaccaaa       120
     atacttggtg tattttcggc acgcagagca gcttatcgga ctactgttag tgcatttggc       180
     atcatctccg gaagcatcgt ttgatcgccg gacacatctt tggatcgccg gacacatcgt       240
     ttgatcgccg gacgcatcgt tggatcaccg taatcatcgc cactggatcg tcgcggatac       300
     ctgcatacag ggtgtgcgcc acataaccgt cgcaggtaca gttgcgcaag cgaaggaaca       360
     gcggcacaag gtggacgaag aaccgtaagc tagacacgca atcgcggttt tgtcattcca       420
     ctcttcccat acacacatac ttgtgcagct ggtctgcaaa taaatgagac aaactgagtt       480
     actctcccaa gcataggagt gttttttctc tctcagaacc aaggggcatt gccaacatat       540
     tcggataagg tattgcttca atcaataatt gctaatttat ttgcaaacgc aatcgcggtt       600
     tcgtcattcc actctgacca tatacataca cacatacttg tgcagctggt ctgcaaataa       660
     acgagccaaa ctgagttact ctccccagca tcggagtgtt ctgcctctct cagaaccaag       720
     gagcattgcc aacatattcg gataaggtat tgcttcactt aataattgct ccacaatcac       780
     atttagtttt cgctaattaa cgcttcgcat tatgagtgac actcagctcc tcgtgtcgtt       840
     aagacagcaa aggaatacac atcagcgaaa catcgttaat ctcagaactc gcatcgaacc       900
     gcagaccgac attgctgccc ttgaatgcca atcacagatt ttggaatcgt attttaagca       960
     aattcttcaa atccaatcgc agatcgaacg aacatagcca ccaaggcaat tgtcataact      1020
     caaattgggg cgacaaagaa ggtccggcca gaagatgcaa gttttttcaa ttcatcggta      1080
     aattgcgcaa ctgggcatca taatcgtttg ccatcgttaa agctgcctaa gttcgacggg      1140
     aagtatggtg actacataaa gtttatcact gcctttacta gcatggtaca taatgacgct      1200
     tcaatatcag gtgttgacaa atttaactac ttgcttagct gtttgtctgg cgctgcgctg      1260
     agtgtcgtgg ccccctttca agtgtccgaa accaattatc caaaggcgtt aaagcagtta      1320
     aaggagcgct actataaaaa ggttttgatt ttcgtagagc acatttctag cttattcgat      1380
     gtcccaatga tgaaaagatc tgatcccgca gctctgcgct gtatcttgga taccgtctcc      1440
     gcgctgcgtg aatcgttgtt gtcattagga tcagaagcag atgttatgaa cgcaatccta      1500
     attcatcttg ttttatctaa aattgatgca gattcaaaat tatcgtacga tcgggttcaa      1560
     gaatacgagg tgttgcctac ttgggaggat tgttatcgca gtttaagccg tcactgtcaa      1620
     tatttggaga gcaacgttaa acgatcatct gatgagaagc caaaggaaag gcccacgcag      1680
     aataggagag cctttgttac ggcacagggt gtttgtaaaa aatgttttgc tactgatcac      1740
     cctctcactc agtgcccttc atttggttta ctaggctggc aggataaatt taatttcatc      1800
     aagcaatcct ctctgtgcat aaattatttg cgcaccggcc atttggcgag cagatgtcca      1860
     agtagatccc gatgccgcgt ttgtcaaggc ttacatcaca ctattttgca tagaactgct      1920
     catccagagc aaccaacaca aattgttgac cacacatctc agcaggagcg ggaacccaca      1980
     catgcggttt ccatgctttc gcgtcattcg aggcgcgctt taattcctac ggcaatagta      2040
     ttgattaggg ataagtttgg aatatttcag ccagccagag ctttgcttga ctcaggctct      2100
     gaaataaatt tcatctccga agagttggcc aagctccttc agctcagatt cgaaagacag      2160
     aagtatgaca tttctggcat aggcgatgtc agaacgcaga tgagattctc tgtctcaaca      2220
     actattcgat cacgactatc tgtagatgaa tggcatttac aattcgctgt agccaagaca      2280
     ttatcgctca atcagtcaga gcgattcgtt gatacttcac aatggaacat acccacagag      2340
     attgaccttg cagatccagg attctacatg cctcacaaga ttgacctact catcagcaca      2400
     caagagtttt ttgacttacc tccaaatggc aaaatttctt tgggtccagg tcttccctgc      2460
     ctggtcaata ctgcacttgg ttggatcgtt ggcggaaagg tttctgatat tccgcaaccg      2520
     caagtcgtca catgcaacat ggcacgttct acggagctgc aagatgcact agaaaggttt      2580
     tggctaatcg aagagtttga ttcgcaccat taaggtttca ccctagaaga gcaggaatgc      2640
     gaacggcatt ttttggcaaa cgcaaagttt ctcacatctg gacgggtcca agttagcttg      2700
     ccctttaaag agaatcctca catgctaggt aaatcctttg aaattgccaa atcccggttt      2760
     ctgcaaaatg aacgtaggtt gaaccgcaac cccttgttaa aggagatgta cgtgaaattc      2820
     atgaaggaat acctagcttt gaatcacatg caattggcat ctgatttcga ctctcagaag      2880
     acacattatg tgatcccgca tcatggagtc cttagatcag aaagcacgac tactaagctg      2940
     cgtgttgtgt tcgatgcatc atgcaaaaca acatcgaacc tttctctaaa tgagttgttg      3000
     atgattgggc caagcatcca gcagaatctt atcttaacac ttctagcctt tcgctcgcat      3060
     cgtcatgcac ttgtagctga tatctgcaat atgtatcgcc agtttgaagt gtcaccagac      3120
     gatcgtatgt atcaacttgt tctctggaga gaatcctcag ctgcgccttt agaattgttc      3180
     cagctcaaca ctgtcacgta cggcatgtcc tgcgcaccat ttctagcgat caggagcttg      3240
     aaatatattg cggataactt ctccaatcag tttcccatcg gagcagccgt tcttaaagaa      3300
     gagatgtacg tcgatgacct ccttactgga gcagacagtg tcgaagagct tcatctcaag      3360
     gctgcagagg tcactagcat actttctaag gctggattgg agctagcaaa atggaacaca      3420
     agcaaaatag aaggcaacgg agcagagttt caattcaagg ttgataccaa agatgtcacg      3480
     aagactttgg gcatgtcgtg gcaaccaaaa ctagatcttt tctgttttag gtatacacta      3540
     cctacactct ctgccatcac caagcgaagc atcgtctcac ttgtagctca cctgtacgat      3600
     ttgctagggc tcgtatcacc agtcgttatt cgatgcaaaa tattggtcca agagttgtgg      3660
     atgcaccgtc taaactggga tgatccactt ccccctgagc ttcaatccca gtggaagcga      3720
     atagaagaag atttgcacaa tcttcaatcc atcgaagttc cgagatttat taactcgtca      3780
     ccaagaaatc tatcggaaat acacggattt tcagatgcat cgcagcgagc ttatggctgt      3840
     tgcctatatc tacgaacata cttaaatgga gagtttaaat caatgcctat catcgccaag      3900
     tctaaagtgg ccccaataaa ggcaatttca ctgccgcggc tagaattcgc ttcaggagcg      3960
     ctccaaatgg ctcaaaccca atgccaacat tcaaattggc caaatggtct ttgttcacga      4020
     ggacaatgca cctccccagg aatggatcct tggtcgcatc accaacacgc atttcggagc      4080
     tgatggacga gtaagagtgg ccgagatcaa gttgaaagac cgaaccattc gaagacccat      4140
     ctgtaagata gctcccctgc ctgagcaaat tggcgcttga atactccttg gatcattcaa      4200
     cgggaggaga a                                                           4211
//
ID   BEL-9_DTa-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   AFFI01008190;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DTa_;
KW   BEL-9_DTa-I; BEL-9_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-302
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01008190; Positions    3782    3481.
XX
SQ   Sequence 302 BP; 91 A; 64 C; 38 G; 109 T; 0 other;
     tgttcgatga catcataatt caatgctaac ttcatttatt attattatat ttttgtaaat        60
     aactttggtc aaagctgtca taatttaaat tcattgccaa cttgttctag ataactaccc       120
     cacactgtaa tcatatgttt gtatttgaat tcgccctacg cactcttata ctctcacacc       180
     tacacatgta catatcgctc tttgtaatcc taaacttgaa cattaaaagt cagtgcatat       240
     tagagatcga aacatatcgg acgttttact ctattactct gcatttgggc agagtccgca       300
     ca                                                                      302
//
ID   BEL-9_DWil-I repbase;    DNA;    INV; 5711 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DWil_;
KW   BEL-9_DWil-LTR; BEL-9_DWil-I.
XX
NM   BEL-9_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5711
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5711
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   Positions [4466-5047] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           483..5681
FT                 /product="BEL-9_DWil-I_1p"
FT                 /translation="MGKDGSNTPVSSKGTDKLTNLRSQRTQFENHIRTLHE
FT                 KIIATSDQEDADTLDCRLQILESHYRQITHIQTQIENLHVIDKERSNLDEM
FT                 YIKVKVHLLSLLQRKRSTGPVNTSDMSFMSSSMSPTVVHSQRLPKLKLPSF
FT                 DGKYSAFKRFKSSFLNLIHNDHHMPTIDKFNYLLECLSGPALEVVQSFQVT
FT                 EQNYSQAWSRLEARYDNDVLIFHDCISSLFNLPLVKQPEARLLQKLIDNAS
FT                 AIRGSLLTLGSTEEIMNNIMIHILLTKVDAETKGVYDEKQSFDKLSTWEEF
FT                 CTILHRRCQFLESHQTGQLGQRNSSLGGKRPSTSKAFLNINSQCLHCHSTA
FT                 HYVSNCKSFGELSLQQRFETVKRTNACLNCLRTGHRVKDCPSLSRCKVCRS
FT                 AHHTLLHQFASTPIKNLSSSIQSVNPITNSQSTSLLTNTDKKGMLPTALVH
FT                 IMDKSGQLHTVRALLDSCSELNFITEETAKRLNLDRTRVSQEFSGITGSSQ
FT                 GIKHNAFATIRSRHSSFTWSANFAVIKKICAQQPHEHIDTSNWTIPTDINL
FT                 ADPYFNEPHKIHILINTNGLFAAILDGQQGLGENMPYLINTEYGWIVGGNL
FT                 ETTHERPRQQCLLVHVNPSLDLLVKRFWEIEDCEFVGNRQTKEEQECESHF
FT                 CKNAIVKSDGRLQVRLPFKEPPEKLGFSYDNAVRRFKSLENRLDRDDQLKK
FT                 AYVDFINEYVKLGHMSTKTVASHNEPHYYIPHHCVLRPQSVTTKLRVVFDA
FT                 SAKTSSGKSLNELLMIGPTIQQDLFITFLSFRLNRYALTGDIAKMYRQFVI
FT                 DPRDRRFQRIVWRPTKTEELKTYELNTVTYGMSAAPFLAIRGVHHIADLYS
FT                 HDHPIGAKTLRNDLYVDDLLTGADSVTELQHIKNDTVDILAQAGLHLTKFS
FT                 SNCKEITKTSEDEVFIAMEDQDTTKTLGMTWMPSSDIFTFRYICDHQEPFT
FT                 KRSILSVVARMFDLLGFISPVIVRCKILMQDLTLKGLDWDEPVDGRIKERW
FT                 KELLQDLKDLSNLQIPRYVNTSKTYRCEIHGFADASERAYGCCLYVRSELP
FT                 SGVKVTLLVAKSKIAPTKTQSLPKLELCGALLLSRTWRKFERTLKLYIDKV
FT                 YFWTDSKIVLQWLKLHASTLNCFVANRVSELQQHTEEIIWKHVPSNKNPAD
FT                 IVSRGCRTSELQTSMWITGPTFLKLSKAEWPILREPLPPPIEVRTKSALLC
FT                 SRADNANSQSILNMIINNSSSYIRIVRIVSYLYRSVNKVKPDRTLSSSSIA
FT                 DIRITETEMYQSFWKIVALIQQECYADEISLLKNKQTLTPCLQRLTPFMHT
FT                 MTFGQTAVCVMRVGGRLENGDLPFNAKHQALLPQNHRFTKLYIEFLHNKNL
FT                 HAGPKFILSLLRERIWVINARALIRKVVRSCIRCFHFKPRLMTQLMGNLPA
FT                 DRLRAERPFLVTGVDFCGPFFTSYRIRGKPPYKTYAAIFVCFASKAIHIEL
FT                 VSELSTNAFLLCIRRFVARRGVPLRMVCDNATNFVGAATRLAEFKSKLFNS
FT                 DVIDHIKTYSSIKGFNFCFIPPRAPHFGGLWEASVKSAKTLALKNISNASL
FT                 TFEELLTVFSDVEAILNSRPIAPTSDDPNDFNALTPGHLLIGTELTSVPES
FT                 LLYHSTDPPGTELRYLDRWQRVTYLKQQFWTLWARDYVHNLQQRSKWIYGK
FT                 ANVALGQLVIVHEDNVPAQHWPLARVVSVNAGPDDKIRVVELRTAKGIFKR
FT                 PIHKIAPLPESFI"
XX
SQ   Sequence 5711 BP; 1835 A; 1264 C; 1103 G; 1508 T; 1 other;
     ttttggcgac cgtgacagga ccagaaactt gctgttaaat aagttttggt tcaattgcaa        60
     ctaagttgga ctcgttgttt cataacttct taagctacca caagtttccg aaaagggatt       120
     gcaagaggca atcaatcatc aaacacccgt tgagacatct aggaagaaaa gtcgacatca       180
     ttaatgcata tgataccacg ttaaactctc cacatactgc agtaaagtca ttggaataaa       240
     accgcaagta ttcaatcaaa caattactgt actcgcacat gtccaataag agaaaaccga       300
     acagttatat tttcgtcgtt tgtcattcca ctctttacat atcgaacaca aacaagcgtg       360
     agtgcctgcg ccaactgtac atcaaaaaac agttaagttt gcgaacataa tacacatata       420
     actattcaac attcgcgttg gttctgctac ttggaggtgt tgctggcgtt tattgaagca       480
     ttatgggcaa agacggttca aacactcccg taagctcaaa gggaacagac aaactaacaa       540
     atcttagatc ccagcggact cagtttgaaa atcatattcg aactttacat gaaaagatca       600
     ttgctactag cgaccaagaa gatgccgata cactagactg cagacttcaa atacttgaat       660
     ctcattatag gcaaattact cacattcaaa cacaaattga aaatttgcac gtaattgata       720
     aagagcgcag taatttagat gaaatgtaca taaaggtcaa ggtacattta ttgtctcttt       780
     tacaaaggaa acgttcaacg ggaccagtaa acacatcgga tatgagtttt atgagttctt       840
     caatgtctcc tacagtggtt cacagtcaac gattacctaa actgaaatta cccagtttcg       900
     atggtaaata ttcagcgttt aagagattca aatcgtcttt cctgaatcta attcacaacg       960
     atcaccacat gccaacaatt gataagttca attatcttct cgaatgttta tcgggacctg      1020
     cactggaggt cgtgcagtcg ttccaagtca ccgaacaaaa ctacagtcaa gcttggtcaa      1080
     gattagaagc tcgctacgac aacgacgttc taatcttcca tgattgtata tcgagtctgt      1140
     tcaatttacc attagtcaag caaccagaag caagactttt gcagaagctc atcgataatg      1200
     cgtccgctat acgcggatca cttcttacac taggatcaac tgaggaaata atgaataaca      1260
     tcatgattca catacttctt acgaaggttg atgccgagac caaaggcgtc tacgacgaaa      1320
     agcaaagctt cgacaagctt tcaacgtggg aggaattctg cacaattctt catcgccgct      1380
     gccagttcct agaaagtcat cagacaggtc aactcggtca gcgcaatagt tcactaggag      1440
     gaaaacgacc atcaacgtca aaggcattcc tcaatattaa ctctcaatgc ttacactgcc      1500
     attcgacggc acactatgtt agtaattgta aatcatttgg agagttatcg ctacaacaaa      1560
     ggttcgaaac agtcaaacgg accaatgcat gtcttaactg tctgcgaack ggacatcgcg      1620
     tcaaggattg tccctcactc tcccggtgca aggtgtgccg atcggctcat catacgttat      1680
     tgcatcaatt cgcctccacc ccgataaaaa acctatcatc atcgattcaa tctgttaatc      1740
     caataactaa ttcacaaagc acttcgttat taacgaacac tgataaaaag gggatgcttc      1800
     ctacagcatt ggttcacata atggataagt ctggccaatt acatactgta cgggcacttt      1860
     tagattcatg ttctgaactt aattttatta cagaagagac tgccaagcgg ctaaatctgg      1920
     ataggactcg tgtatctcaa gaattcagcg gcattaccgg aagcagtcaa ggcattaaac      1980
     acaatgcgtt tgccacaata cgttctaggc attcatcatt tacgtggtcc gccaactttg      2040
     ccgtcattaa gaaaatttgt gctcagcaac cacacgagca tatcgataca tcaaattgga      2100
     ccatacctac ggatatcaat ctagccgatc cgtatttcaa cgagccccac aagatacaca      2160
     ttttaataaa cacgaatggg ctgtttgcag caatcctcga tggtcagcaa ggcttgggcg      2220
     aaaacatgcc atatttaatc aacacggaat atggatggat agttggtgga aatttggaaa      2280
     ccacacacga aaggcctcga caacaatgtt tattggtaca cgtcaaccca tcacttgatc      2340
     ttctagttaa aagattttgg gaaattgaag actgtgagtt tgttggtaac cgacaaacca      2400
     aagaagaaca ggaatgcgaa agccattttt gtaaaaatgc aattgtaaaa tcggatggaa      2460
     gactccaagt tcgacttcca tttaaggaac ccccagagaa attaggattc tcctacgaca      2520
     acgcagtacg gcgtttcaaa tccttagaaa atcgtctcga ccgcgacgat caactaaaaa      2580
     aggcatatgt agatttcatc aacgagtatg taaaacttgg ccacatgtct accaaaactg      2640
     tcgcaagcca caacgaaccg cattattaca tacctcatca ttgcgtgttg cgtccgcaaa      2700
     gcgttactac gaaacttaga gttgtgtttg atgcttcggc taaaacatca tcgggaaaat      2760
     cattaaatga gctgttaatg attggcccca caattcaaca agacctattt ataacatttc      2820
     tatcatttcg tctgaacagg tatgcactta caggcgacat agccaagatg tatcgccaat      2880
     ttgtcataga tccaagagac cggagatttc agcgcattgt atggcgacca acaaaaacag      2940
     aagaactaaa aacttacgag ctcaacaccg tgacatatgg catgtcagct gcacccttct      3000
     tagctatcag aggcgttcac catattgccg atttgtactc acatgatcat cctataggag      3060
     ctaaaacatt acgcaacgac ttatatgtgg atgacttgct aaccggagct gatagcgtaa      3120
     ccgagcttca acacattaaa aatgatacag tagacatctt agcacaggct ggattgcatc      3180
     ttacaaaatt tagtagcaac tgcaaggaaa ttacgaaaac ttcagaggac gaagtattta      3240
     tcgccatgga agatcaagac actaccaaaa ctctgggaat gacgtggatg cccagcagtg      3300
     acatctttac atttcgatac atttgtgacc accaagaacc atttaccaaa cgatcaattc      3360
     tttcagtagt agcaagaatg tttgacttgc tgggattcat aagtccggtc attgttcggt      3420
     gcaaaattct tatgcaagac ttgacactca agggcctaga ttgggatgag cctgtcgatg      3480
     gtcgaattaa ggaaagatgg aaagaacttt tacaggatct taaagactta tcaaatctac      3540
     aaataccacg atatgtgaac acatcaaaaa cgtatcgatg cgaaatacac ggattcgctg      3600
     acgcatccga aagagcgtac ggatgctgtc tttatgttcg atcagaactc ccgagtggag      3660
     tcaaagtcac tttactcgtt gcgaaatcaa agatagcacc taccaagaca cagtcattgc      3720
     ctaagttaga actgtgcgga gcattgttgc tcagtcggac ttggcgcaaa ttcgaaagga      3780
     cattaaaatt atacatcgac aaggtatact tttggaccga ttcaaaaatt gttctgcaat      3840
     ggctgaaact tcatgcatca acactaaatt gttttgtagc aaatagagta tcagagttac      3900
     aacaacacac ggaagaaata atatggaagc acgtcccttc taacaagaat ccagcagaca      3960
     ttgtttctcg tggttgtcgg acatcagagc tgcaaacaag catgtggata acagggccaa      4020
     cattcttaaa attgtctaag gccgaatggc caattcttag ggaaccactt ccgccgccta      4080
     tcgaagtaag aaccaagtca gcacttcttt gtagcagagc agacaacgct aattcacaat      4140
     ctattctaaa tatgatcata aataattctt catcgtatat tcgaatcgtt cgaattgttt      4200
     catacctcta tcgcagcgtg aacaaagtga agcctgatcg cactctaagt tcatcatcaa      4260
     tagccgatat tcgcattact gagacagaaa tgtatcaatc gttttggaaa attgttgcac      4320
     taatacaaca agaatgttat gctgatgaaa tatctttact aaaaaacaaa caaaccttaa      4380
     caccgtgtct acagcgtttg acaccattca tgcacacaat gacatttgga caaactgcag      4440
     tatgtgtaat gagagtcgga ggacgtctcg aaaacggaga ccttccattc aacgccaagc      4500
     accaggccct gctacctcaa aatcatcgtt ttaccaagct atacatcgaa ttcttgcaca      4560
     acaaaaatct tcatgctggc ccaaagttta ttttatctct tttacgagaa cgaatttggg      4620
     taatcaacgc acgagcgttg attagaaaag ttgtgcgaag ctgcatccgc tgctttcact      4680
     ttaaacctcg cctcatgact caactgatgg gcaatcttcc tgctgatcga ctacgagctg      4740
     aaagaccatt cctagtaaca ggagtagatt tttgcggccc atttttcacg tcttacagga      4800
     ttcgcggaaa gccgccgtac aaaacatatg cggcaatttt tgtatgtttt gcttcaaagg      4860
     cgattcatat tgaattagtc tccgaattgt caacaaatgc atttctgctt tgtatacgta      4920
     gatttgtagc gcgccgtggt gtaccattgc gcatggtgtg cgacaacgcc acaaactttg      4980
     ttggcgctgc tacaaggcta gctgagttta agtcaaaatt gtttaactca gacgtcatag      5040
     atcacataaa aacatatagt tcaattaaag gatttaactt ttgctttatt ccccctagag      5100
     ctccacactt tggcggcctc tgggaagcgt cagtaaaatc agcgaagaca ctggctctga      5160
     agaatatttc aaacgcatct cttactttcg aggaactact cactgtgttc tcggatgtgg      5220
     aagctatcct taattcaagg ccaatagcac ccacttcaga tgaccccaac gatttcaatg      5280
     ctctcactcc tgggcatttg ctgattggaa ccgaattaac gtcagtacca gaatcattac      5340
     tttaccattc cacggaccct cccggaacgg aacttcggta tctggataga tggcagcgag      5400
     tgacctattt gaaacaacaa ttctggacac tgtgggcacg ggattatgtt cataacttac      5460
     aacaacgcag caaatggatt tacggaaaag caaatgtggc cttgggacaa ctagttatag      5520
     tacatgaaga caacgtgccg gctcaacatt ggcctttagc aagagtagtg tctgtaaatg      5580
     ccggacctga tgacaaaatt cgagtagtcg aacttaggac tgcaaaagga atcttcaaaa      5640
     ggccaattca caagatcgct ccgcttccag aatcatttat ttgaaagttg gttctttcaa      5700
     cagggggagc a                                                           5711
//
ID   BEL-9_DWil-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   scaffold_181100;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_DWil_;
KW   BEL-9_DWil-I; BEL-9_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-349
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181100; Positions  208042  207694.
XX
SQ   Sequence 349 BP; 115 A; 62 C; 61 G; 111 T; 0 other;
     tgttggagaa gaactcctga atttacatta attaatttaa ttattcggaa atattaacca        60
     ttgggttaaa tagctaaact atcgatatat cgcaagctca aagagagttc aatctagcat       120
     cactgttgtc tctcttcttg cgtttccctt tacattttac tttgtattac tctctctcgt       180
     agcatataag aattgaagaa tttactgtac caagagaact cgaatgcgac ggacgcataa       240
     taaatgtaaa actactaacg tcgtctaatc tgattgtggc aagggaagtt ttgtttcatc       300
     gaaaccaacg agtagcagat tataaatatg gccgagaaat tggccaaca                   349
//
ID   BEL-9_FoCa-I repbase;    DNA;    INV; 5684 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5684
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2590-2590 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           364..5601
FT                 /product="BEL-9_FoCa-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDRLKKQRTPIRAMMTRTVNELDEEMTKEDRDKDVLI
FT                 VKLKKLIELTDTVVDLDKQVLDAILDNEELTEEDYLEESRSIEGYNDKCRF
FT                 VRHKVEKFLGPERSASPTNSSYSTASGGLLKKNYKLPKIELMKFDGEIKNW
FT                 LEWWAQFKKIDEDEDLHVTDKFHYLVQSMVSGSKAADLIRSYPKTDANYPK
FT                 AIGALKERYGKEDILVDLYTRELAQFLFEKEKLSLEKFYDRLQTQLQALES
FT                 LGVKSERDTLFLRPIIETSLPKEIFNAWYRSPLYQEDGAKVNPPKSRLDYL
FT                 MQFLRQEVEREAKLKMFIGGDSSGKSKKEKYENHGKKKDSIPTAAGLFVAQ
FT                 SSNCVFCSKSNHPSTECYRADRMSWSEKSDLIRSQNLCYRCLKFGHRKSDC
FT                 KVKLKCSSCGEPHARSMCARLPSNQRNNTGREEVHSEVPATAANANHSCSK
FT                 DVLMKTLLVKMAGPKGTRIVRLLFDEGSQQSSGGQRTISAIGSPLVGEEWT
FT                 RNVLFGGVLTEPRKIKKFKVQVQSLDGRFKRDIILRESPTICGDIPRIPAG
FT                 PWMNELKKRKIFLSDFEMSHVDHPDIELLIGSDYWGQFVCGRPLMLSCGLV
FT                 AVETVFGWTLSGPVPGKEVSMGVMTIHHSLFNAEACVQDLWKLETIGITDP
FT                 TEHKTKNEKEEEARQHFLRTVSRTQEGRYAVALPWVDEERTIPDNKVVAEK
FT                 RLISTTTKLRESGNYELYDKVFQDWEKEGLIEEVVGGVDRPCHYLPHRPVY
FT                 KLESKTTPVRPVYDASCKNGRNPSLNDLLEKGPNLLELIPAILLRFREKKI
FT                 GVISDIRKAFQMIEVAKPDQDFQRFLWWNNKENPRMKIYRHKRVVFGVKCS
FT                 PFLLGAVIEYHLSQVTGEEKEYANKLLRSLYVDNCVTSVDTEEEYEKFKSL
FT                 AVKMMCDARMELRQWERSSSGAAGISFEQFDKDENGQETTVVLGLNWDKKK
FT                 DELSVSVPKEEKIENISKRVMLSKVQQFFDPMGYLSPTTIIPKLLLQKTWT
FT                 EKNSWDEELDSTIKKEFEDWWNQAQLLKEMKIPRWAFCSSYESNRQFHVFC
FT                 DASQHAYAAAVFVRVEDNEQVSVQLLQAKARVAPMKKVTIPRLELLGCTIA
FT                 ARLSKSVKEALSAEETPTFYWSDSTTALAWIKRNDEWGTFVGNRVKEICSL
FT                 SNSMEWNHVPGVLNPADLPSRGCSPSHLINSKWWEGPDWLKKPKSEWPSSK
FT                 EEADDEEVRAEMKKVAKVSLIATLPSTPWYGEMSCSFVKNVRVIAMLKRSI
FT                 RRFKGEKIVGELEQREIEEAETFMFHKIQEESFPMNQNVVENLQVVRGEDD
FT                 LLRIKTKITNMPESESFRKPVLLPSNHPVVWQLIRSEHILNMHAGLSITMS
FT                 KLRERFWIIHLRQQVKKVIRQCVICRRFTTKKSEVPCPPLPEDRVTTTAKV
FT                 FQVVGIDLAGPFFLKNGSKAWMVLYTCAVYRAIHLELVSSLSTEDFLLSLH
FT                 RFISRRGRPAIIYSDNGTNFEGANNAIKLMDWKRIEQESRVSRIKWKFSAP
FT                 AAPWWGGWWERLIRSCKDIMKRMLGRKKLNLAELETCMFEVEAVVNSRPLT
FT                 YMSEEQDDLVPLTPAMFLHDITEADFPEEELLGGQALRSKYRDLRQLRQEL
FT                 KSRFVKEYLSQLVQRGKEKKSPEFRVGDVVLIGSDDKRRIIWPMARILELI
FT                 VGRDGHVRVAKLKTXNGLLTRPLQRLFPLEVSTEEIPXIQNRVKISAQVWE
FT                 SVDAKKEENVRTRFGRQIRNPERFGV"
XX
SQ   Sequence 5684 BP; 1751 A; 995 C; 1516 G; 1419 T; 3 other;
     tttggtgacc tcgacgtgat tgaggtcgtt gttaaagtgc agtgaagtta tctgtgagtg        60
     taaagtgaaa gagtgcatcc atcatcccct cgaggaagca aaggacgagt gggaggattg       120
     cagtttttaa gcaagaagga caagagtgga ccgccccgtc attaccaccg aggactgatt       180
     tcagaggtcg agtgggagga gcaacccgtg tggatcttgc atcaataata aaaattgaat       240
     ttacggtttg ctacggcctt gagcgtagcc tacctaggtg ggatcgtcga tatttttgga       300
     gaatttgaga gtagattaaa ctaattgttt tttctttgct ggctttattc ggttcgagac       360
     aggatggatc gtctaaagaa gcagcgcaca cccattcgag ccatgatgac taggacggtc       420
     aacgagctgg atgaggaaat gacgaaagaa gatcgagata aggacgtcct gattgtgaag       480
     ttgaagaagt tgatcgagct taccgacacc gtggtggatt tggataagca agttttggat       540
     gcaattctgg acaatgaaga acttactgaa gaagattatt tagaagaatc aagatcaatt       600
     gaaggataca atgataagtg tagatttgtg cgccacaaag ttgaaaagtt ccttggtcca       660
     gaacgatcag caagcccgac aaatagttct tacagcactg ctagtggagg acttcttaag       720
     aagaattata agctaccaaa gatcgagtta atgaagtttg acggggagat caagaactgg       780
     ctggagtggt gggcgcaatt taagaagatt gatgaagatg aagatttaca tgtgacggac       840
     aagttccatt atttagtgca gagtatggtc agcgggtcaa aggccgctga tcttatcaga       900
     agctatccga agacggatgc aaattatccg aaagctattg gagcattgaa ggaaaggtac       960
     gggaaagaag acatccttgt tgacctatat acaagagagc tggcacagtt tttgttcgag      1020
     aaagagaagt tatcattgga gaagttttat gatcgtcttc aaacgcagct gcaggcgttg      1080
     gagtcgttgg gagtgaagtc tgaaagagat acattgtttc ttcgccccat tattgagacc      1140
     agtctaccta aggaaatttt taatgcctgg tatcgatctc cattgtacca ggaagatggt      1200
     gcgaaagtta atccaccaaa gtcaagactc gactatttaa tgcagttcct ccgacaggaa      1260
     gtggaacgag aagcaaaact gaagatgttt attggaggtg attcttctgg caagtccaag      1320
     aaagaaaaat atgaaaatca tggaaagaag aaagattcaa tcccaaccgc agcaggattg      1380
     ttcgtggcgc agagcagcaa ttgcgtgttt tgctccaaat ccaaccatcc aagtaccgag      1440
     tgttatcgag cggataggat gagttggtca gagaagagtg acctgataag aagccagaat      1500
     ttgtgttatc ggtgtttgaa atttggacat cgtaaatcag actgtaaagt taagttgaaa      1560
     tgttcatctt gcggcgagcc ccatgcaaga tcaatgtgtg caagacttcc gtcaaatcaa      1620
     aggaacaata ccggaagaga agaggtacac agtgaggtcc cagcgacagc agcaaatgcc      1680
     aaccattctt gcagcaaaga tgtactgatg aagacgttgt tggtgaagat ggctggtcct      1740
     aaaggaacaa gaatagtgag gttgctgttc gacgagggaa gccagcagag cagcggtggt      1800
     cagaggacga tctctgcaat cggaagtcct ctcgtgggag aagaatggac tcgtaatgtt      1860
     ctgtttggtg gggttctgac ggagccgagg aaaattaaga aatttaaagt gcaagttcaa      1920
     agcctcgatg ggagattcaa gagagacatt attttgaggg agtccccaac tatttgtgga      1980
     gacattccaa gaattccggc cggtccgtgg atgaatgagt tgaagaagag gaagatattt      2040
     ttgtcagatt ttgagatgag ccatgtggac cacccggata tcgagttatt aatcggaagt      2100
     gattattggg gacaatttgt gtgtggcaga ccgttaatgt tatcgtgtgg tcttgtcgca      2160
     gtggagactg tttttggatg gaccctgagt ggacctgtcc caggaaaaga agtcagcatg      2220
     ggagtgatga cgattcatca ctcattattc aatgcagaag catgtgtcca ggatttatgg      2280
     aagctggaga caattggaat cactgatcct accgagcata aaaccaagaa tgaaaaggaa      2340
     gaagaagcaa gacagcattt tttgagaaca gtttcaagaa ctcaagaagg aagatacgcc      2400
     gtggcgcttc cctgggttga tgaagaaagg accattcccg acaacaaggt cgtcgcggag      2460
     aagaggttaa tttccactac tacaaaatta cgagagtcag gaaattatga actttatgat      2520
     aaagtatttc aagattggga gaaggaagga ttaattgaag aagtagttgg aggcgtggac      2580
     aggccttgtc attacctgcc ccaccgtcca gtttacaaat tagagagcaa gacaactcca      2640
     gttcgtcccg tttatgacgc ttcctgtaag aatggaagaa acccgtcact gaatgatttg      2700
     ttggagaaag gaccgaactt attggagctc atacctgcaa ttctgttgag atttcgcgaa      2760
     aagaaaattg gtgtcatttc tgacattaga aaagcatttc aaatgatcga agttgcgaag      2820
     ccggatcaag atttccagcg tttcctgtgg tggaataata aagaaaatcc aagaatgaag      2880
     atttatcgac ataagcgagt cgtttttggg gtcaagtgca gcccattctt actcggagct      2940
     gttatcgagt accatttgag ccaggttact ggagaagaaa aggagtatgc aaataagctc      3000
     ctgcgttctc tttatgtgga caattgtgtc acgtcagttg acacggaaga agaatatgaa      3060
     aagttcaaga gtttagcagt caagatgatg tgcgacgcca ggatggagct tcgtcaatgg      3120
     gaacgttctt cctctggggc cgctggaatc agtttcgagc agtttgataa ggatgaaaat      3180
     ggtcaagaga caactgtagt gctcggactg aactgggaca agaagaagga tgagttatca      3240
     gtctccgtcc cgaaagaaga aaagattgag aatattagca agagagtgat gttgtcaaaa      3300
     gtgcaacaat tttttgaccc gatggggtat ttaagtccaa ccaccatcat cccaaagctg      3360
     ttattgcaaa agacctggac ggagaagaat tcatgggatg aagagttgga ttcaacaatt      3420
     aagaaagaat ttgaagattg gtggaatcag gctcagctat taaaagaaat gaaaattccg      3480
     aggtgggcat tttgctcaag ttatgaaagc aatcgccagt ttcatgtatt ttgtgacgca      3540
     agtcaacatg cgtatgccgc cgccgttttt gtacgagttg aagataatga acaagtttca      3600
     gtccaattgt tacaagctaa ggcgagagtt gcccccatga agaaggtaac aattccgaga      3660
     ctggagctat taggatgtac catcgctgcc agactttcga aatcagtgaa ggaggccttg      3720
     tccgcrgagg agaccccaac tttttactgg agcgactcga cgacagcgct ggcttggata      3780
     aagcgcaatg atgaatgggg aacatttgtg ggaaaccgag ttaaggaaat atgttccctc      3840
     agtaattcca tggaatggaa ccatgtgccg ggcgtcctca acccagccga cttaccttca      3900
     agaggatgca gtccttctca tcttatcaat tctaaatggt gggagggccc ggattggcta      3960
     aagaaaccga aatcggaatg gccatcaagt aaagaagaag cggacgatga agaagttcgt      4020
     gccgagatga agaaagtggc aaaagtgtca cttattgcga cgttgccatc tacgccctgg      4080
     tatggagaga tgtcatgttc ttttgtgaag aatgttcgtg ttattgcgat gttgaagcgt      4140
     agcatccgtc gatttaaagg agagaagata gttggcgaat tagaacagcg agaaattgaa      4200
     gaagctgaaa cttttatgtt ccacaaaata caagaagaat ctttccccat gaatcaaaat      4260
     gtggtggaaa atttacaagt tgttcgagga gaagacgact tgctcagaat taagaccaag      4320
     attacgaaca tgccagagag tgaatcattt agaaaaccag ttttgctgcc atcaaatcat      4380
     cctgtggttt ggcagttaat tagatcggag catattctaa atatgcatgc aggattaagc      4440
     attacgatga gcaagttaag ggagcgtttt tggataatcc atttacgaca acaagttaag      4500
     aaggtgatcc ggcaatgtgt gatctgtcgc cgttttacca ctaagaaatc agaagttccg      4560
     tgccccccac ttcccgagga cagagtgacg acgaccgcga aggtgtttca agtggtgggg      4620
     attgacctag caggaccgtt cttcctgaaa aatgggtcaa aagcctggat ggtgctgtat      4680
     acctgtgcag tttacagagc tattcatttg gaattagtgt catcattatc aacggaggat      4740
     tttttgttaa gtttacaccg attcatcagt cgaagaggaa gaccagccat catctattcg      4800
     gacaatggca ccaattttga aggtgcgaat aatgcaatta agctgatgga ctggaagaga      4860
     attgaacagg agtccagagt gagtcgaatt aagtggaaat tcagcgcacc cgcagcgccg      4920
     tggtggggcg gatggtggga gcggttaata agaagttgca aggatattat gaagcgaatg      4980
     ctgggacgca agaagctaaa ccttgctgag ttggagacgt gtatgtttga ggtggaggcg      5040
     gtagtcaata gccgtcctct gacctatatg tcagaagaac aagacgactt agtgcccctg      5100
     acgcctgcga tgtttcttca cgacatcacc gaagcggatt tccctgaaga ggaattattg      5160
     ggtggtcaag cactgaggag caagtatcga gatctacgcc aattgagaca agaattgaag      5220
     tcaagattcg ttaaagagta cctgtctcaa ctggttcaac gaggaaaaga gaagaaatcg      5280
     ccagagtttc gagtcggcga tgttgtgctc atcggttcag atgacaagag aaggatcatt      5340
     tggccgatgg caagaattct ggaactgatt gttggaaggg acggtcatgt gagagtagcc      5400
     aaactcaaga cggmgaatgg actgctgact cgacctttgc agagactgtt ccccctggag      5460
     gtgtcaactg aagagattcc ccmaattcaa aatagagtga agatatcagc gcaagtgtgg      5520
     gagtcagtcg acgccaagaa agaagaaaat gtgcgtacaa gatttggaag acagattagg      5580
     aaccctgaga gatttggagt gtaattttta tgtgaatatg tgaaattttt atgaatgtag      5640
     tattgttctt ttgtccgcat tctctcccaa aagaagtggg agga                       5684
//
ID   BEL-9_FoCa-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-328
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2599-2599 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 328 BP; 102 A; 40 C; 60 G; 126 T; 0 other;
     tgtttgaatt catagtctta tttttcccca agaatttaaa ttgagcgctg gtggtatcag        60
     cattttttcc agatctttct tttgtcagtg agtaggtaaa tgtatgtatg cgagagagca       120
     tcaagaaaga gtaaaggttt tgtctagtat ttaattgaat tgaaataatt aaataaattg       180
     atttgttatt gctcgatgtg agtaaaatta aagtttgagt ttttatacaa atttcattta       240
     caccacagta gtagtatttt taagcaacga cccaatcttt ttaagaagta gaacctttca       300
     agctggtagt tcgtttggtt ttacaaca                                          328
//
ID   BEL-9_LH-I  repbase;    DNA;    INV; 5182 BP.
XX
AC   ADOQ01017693;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_LH_;
KW   BEL-9_LH-LTR; BEL-9_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5182
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017693; Positions    3109    8290.
XX
CC   Positions [3790-4368] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(184..3150,3154..4425)
FT                 /product="BEL-9_LH-I_1p"
FT                 /translation="MLENHFENKRELIRSNFAAFTTVAKMKSDTADELSRI
FT                 YHAVTTAVNAQESIDRPIESHGMDLFNHLVVELFDLRTRLEWESSICDFTN
FT                 PPEHETLLTFISKRITTLNAARPKGTTVKASTDSSRSARSLVTKHRLETSR
FT                 CVVCKENHSIRQCSEFKAKSPTERKTVIDTNRLCYNCLNNHLVTKCQSSKN
FT                 CFTCKARHHTMLHEAYVPAQSAEVSALSATRTSKDRKATLLATARVIITDR
FT                 FGDSHAVRVLIDQGSEVSIIFEALAQRLRLSRSRSEISIVGIGGTRIGSTR
FT                 GKVTLNLTSRVTGVHLSAVAFVLPRLSLYQGVTMGNCQNWPHIADLPLADP
FT                 QFQANDPIELLLGAEICSIILEEGLRKGGPQTPIAQKTSLGWILSGGCSVA
FT                 SSQGQSCSLQCSADQDLHELLRRFWEQERETSAPTALTPEEEKCEEIFSST
FT                 HTRTNKGRYVVRLPFASTPQTLAGTRKPAERLLAVMEAKCKRDPRFGGLYQ
FT                 AFMQEYEDLRHMERIDTPPENERRACYLPHHGVFRESSTTTKLRVVFNGSQ
FT                 RTGCGESLNAHFFAGANLLPTLADVILRWRLHRYAMITDIEKMYRQIIVHP
FT                 DDRDWQRILWRHDTRDNVQEYRLTTVTYGLACAPFLAIRTLRQLASDENSR
FT                 FPLGARVLRRECYVDDIATGADTIQDAITLQSELRALCTAGGFSLRKWASN
FT                 CEAALTGINPDHKLHRSQHSWKTEGHSTLGMRWYPSTDTFTFTIQPRTLTE
FT                 FTKRRVLSETARLFDPLGWLAPVVMRAKILIQSAWLRQLDWDTPLPSADAH
FT                 QWQRFLSELPSLDRIRVDRWLGTSSSEETHTELHGFADASERGYAAAIYLR
FT                 VSRRAATTTRLIIAKSKVAPVKQVSLPRLELSAAVMVANLMQHVRANLDLF
FT                 TAPVYLWSDSQVTLHWIQGHSSRWKTYVANRVSQIQELLPEARWQHVLGRD
FT                 NPADCASRGIAPSELPNHSLWWTGSNWLMKGKPFPNEGSEECNKPLPEERI
FT                 IAHAKLDEPQSESDILLRFSSLHQLLRVTAWCCRWQHIVAHKETTTTLQPE
FT                 ELEEALIRWLRMTQAIYYADEIAAVSANQAVSQRSHLKLLNPYIDDNGVLR
FT                 VGGRLKNALLAYDERHPMIVPPNSWLTKLIVESCHLRTLHGGVQLTLGLLR
FT                 LRFWVPRGRAIVKQLLHRCITCTRWRAVTPQPLMGNLPQERITPARPFLRT
FT                 GLDYAGPISIRTSKGRGHKAHKGYIAVFVCFCTKAVHLEVVSDYSTESFLA
FT                 AFRRFVSRRGLCTDIFSDCGTNFVGAARELRQMFRASSSDGRRIATTAARD
FT                 GVKWHFNPPAAPHFGGLWEAAVKSTKHHLRRVIGKATLTFEEMSTFLAQVE
FT                 ACLNSRPLQSLSDDPTDISALTPGHFLTGAPLLAVPEPSRAERSDNTLTR"
XX
SQ   Sequence 5182 BP; 1338 A; 1560 C; 1194 G; 1090 T; 0 other;
     ttttcgggcg cgtatgagga ttggccgacg ttccgtgatc tctttcagtc cgtcatagga        60
     agaaactcgt cgatttctga cattgagaga tttcattacc tccgatcatg tctgcaaggg       120
     gcggctgaaa gattaatacg tccgctatca gtaacggaaa ataactacac tcgcgcatgg       180
     acgatgctag aaaaccattt cgaaaacaaa agagagttga tacgctccaa cttcgccgcg       240
     tttaccaccg tggcgaagat gaagtcagat accgccgacg agttaagccg catttatcat       300
     gccgtcacca ccgccgtaaa cgctcaagaa agcatcgaca ggcccattga gtcccatggc       360
     atggatctct tcaaccacct cgttgtcgaa ttgtttgacc tccgcacacg actggagtgg       420
     gaatcgtcga tctgcgactt caccaatccg ccggagcacg agacactact aacctttatc       480
     tcaaaacgaa tcaccacact gaatgctgca cgaccaaagg gcaccacagt gaaggccagc       540
     accgattcgt cgcgatccgc aaggtctctc gtcacgaagc acagactgga aacgtcacgg       600
     tgcgttgtgt gtaaggaaaa ccactcaatc aggcagtgta gcgaatttaa ggctaagtct       660
     ccaaccgaga gaaaaactgt cattgatacg aatcgtttgt gctacaattg tctgaacaat       720
     cacctggtca cgaagtgtca atcctccaaa aattgcttca cctgcaaggc tcgacaccac       780
     actatgcttc acgaagcgta cgttccagca caatccgctg aagtcagcgc actttccgcg       840
     acacgaacaa gtaaggatcg caaggcaact ttgctcgcca ccgcgcgagt aataatcacc       900
     gaccgcttcg gagattcgca cgccgtgcgc gttctgatcg accagggctc cgaagtgtca       960
     atcatcttcg aggctctggc gcaacggttg cgtctctcgc gatctcgctc cgagatatcc      1020
     atcgtcggga tcggaggtac acgaataggc tcaacacgcg gcaaggtgac ccttaacctt      1080
     acgtcacgcg taaccggtgt acaccttagc gccgtcgctt tcgtcctgcc gcgcctctcg      1140
     ctctatcaag gggtgaccat gggcaactgc caaaattggc cacacattgc tgatttgcca      1200
     ctggccgatc cacaattcca agccaacgat ccgatcgaat tactcctggg ggccgaaatt      1260
     tgctccatta ttctagaaga aggcctgaga aagggcggac ctcaaacacc aattgctcag      1320
     aagacatcac tgggatggat tctttctggc ggttgctccg ttgcttcatc ccaaggacag      1380
     agttgctcac tccaatgctc agccgatcaa gacctacacg agctgttacg tcggttctgg      1440
     gaacaggaaa gagaaacgtc cgctccaact gcactcacgc ccgaggagga aaagtgcgag      1500
     gaaatcttct cgagcactca cacacgcacc aataaaggcc ggtacgtcgt ccggctgcca      1560
     ttcgcttcca ccccacaaac actcgcggga acacgcaagc cagccgagcg attgctagcc      1620
     gtcatggaag caaaatgcaa acgagacccg cgattcggag gactctatca ggcctttatg      1680
     caggaatacg aggacctgcg acacatggaa cgcatagata caccaccaga aaatgaacgt      1740
     cgcgcatgct atctaccaca tcacggagta tttcgcgagt caagcactac cactaagctt      1800
     cgcgtggtct tcaacggctc gcagcgcacg ggatgtggtg aatctctcaa cgcacacttt      1860
     ttcgctggag caaacctcct acccactctg gccgacgtaa ttctgcggtg gcgtttgcac      1920
     cgttacgcga tgatcacgga tatcgaaaag atgtaccgtc agatcattgt ccatccagac      1980
     gatcgtgact ggcagagaat tctatggaga cacgacactc gcgacaacgt acaagaatat      2040
     cgtctcacaa ccgtgaccta cggtctcgcg tgcgcgccgt ttctggcaat ccgaacgctt      2100
     cgacagcttg ccagcgacga aaactcccgc ttccctcttg gggcaagggt actgcgtcgc      2160
     gaatgttacg tcgacgacat tgccaccgga gcagatacca ttcaagacgc aatcacactg      2220
     caatccgagc tccgcgcgct ctgtacggcg ggcgggttct cactaagaaa atgggcttct      2280
     aactgcgagg ccgctctcac tgggatcaac cccgaccata agctccatag atcacagcac      2340
     tcatggaaaa cagaaggtca ttccactctg ggcatgcgtt ggtatcctag cactgacacg      2400
     ttcacattca cgattcaacc gcgaacactg accgagttca cgaaaagacg cgttctatcc      2460
     gaaaccgcac gcttattcga cccattagga tggctagcac cagttgttat gcgcgcaaaa      2520
     attctaattc agtccgcctg gttgcggcaa ctcgactggg atactccgct gccgtcggcc      2580
     gacgcgcatc aatggcagcg attcctaagt gaacttccgt cactcgaccg cattcgcgtg      2640
     gatcgctggc tcggcaccag ctccagcgag gaaactcaca cagaactgca cgggttcgcg      2700
     gacgcctcag agcgaggata cgcagccgca atatatctcc gcgtgtctcg tcgcgccgct      2760
     accacaacac gcctaattat cgcaaaaagc aaggtagcac cggtcaaaca agtgtccctc      2820
     ccgcgactcg aactcagcgc cgccgtaatg gtggccaacc tcatgcaaca cgtccgcgcc      2880
     aaccttgatt tgttcacagc accagtatat ctttggtcag actctcaggt cacactacac      2940
     tggattcaag ggcactcctc ccgatggaaa acatacgtgg caaatcgcgt ctcacaaatc      3000
     caagagctcc tgcctgaggc tcgctggcag cacgttctcg gacgggacaa tccagccgac      3060
     tgtgcctcca gaggtatagc gccgagcgaa cttccaaacc attcgctgtg gtggacaggg      3120
     tctaactggt taatgaaggg taaacccttt tgaccaaatg aaggctcgga ggaatgcaac      3180
     aaaccactgc cagaagaacg aatcatcgca catgccaaac tcgacgagcc tcagtccgaa      3240
     tccgacattc tactgcgatt ctcctcgctg catcaactct tgcgagtcac tgcatggtgc      3300
     tgtcgatggc agcacatcgt agcccacaag gaaaccacca cgacactcca accagaagag      3360
     ctcgaagagg cactaattcg atggctccgc atgacgcaag caatatacta cgcagacgaa      3420
     atcgcagccg tatccgcaaa tcaggcagtc tcacaacgca gtcacttaaa actgttgaat      3480
     ccgtacatcg acgataacgg cgtgctgaga gttggaggcc gcctcaagaa cgccctcctc      3540
     gcttacgacg aacgacaccc catgatcgtc ccgccaaatt catggctcac caaactgata      3600
     gtcgagtcgt gtcaccttcg cacgttgcac ggaggagtgc aactcactct cggtcttctt      3660
     cgcctccgct tttgggtacc acgaggtcgg gctatcgtca aacagctgtt gcaccgctgt      3720
     atcacctgca ctcggtggcg agccgtcaca ccacaaccgc tcatgggaaa tctcccgcaa      3780
     gaaagaatca ccccggcacg cccgttcctc agaacaggac tcgactacgc cggtccaatt      3840
     tctatccgca ccagcaaagg gcgaggacac aaggcacaca agggttacat cgccgtcttc      3900
     gtgtgctttt gcaccaaggc cgtgcacctt gaagtcgtct ccgactattc caccgaatca      3960
     tttctggctg ccttccgtcg cttcgtatca cgtcgcggcc tttgcaccga tattttctcg      4020
     gattgcggta cgaatttcgt cggagcagca cgagaattgc gacagatgtt tcgcgcatcg      4080
     tcatccgacg gccgtcgcat cgctaccaca gcagcaagag acggcgtcaa atggcacttc      4140
     aatcccccgg ccgcgcctca ttttggagga ctgtgggaag ctgcagtaaa atccaccaag      4200
     catcatctac ggcgagtcat cggcaaggct acactaacgt ttgaagagat gtcgaccttc      4260
     ctcgctcaag ttgaagcttg cctcaattca cgaccgctac agtccctctc cgatgacccg      4320
     accgatatct cagcactcac accgggacac tttctcaccg gagctcctct tctggccgtt      4380
     cccgagccgt cccgcgccga aaggagtgac aacaccttga ctcgatagca gctcttacaa      4440
     aaaatgcgcg atcacttctg acagcgatgg tcccgagaat atattcacgg actcacttct      4500
     cgtggaaaat ggattaagct gggaaaaact cccgaagtcg gagctctgtg cttgattcga      4560
     aacgaaatca ctccggcgag ccgatggccc ctcgcccgaa tcacacaatt acatccggga      4620
     gacgatggaa ttgtgcgcgt ggtgaccgtt aaaaccgcta catcggaatt agtacgcccg      4680
     cttgtcaagc tcgtgctgct gcccaaaatc actgcagtct ctccagtgct cgaaactcga      4740
     gcgaatcaag acaaagtaaa cgctcacact caatttcatc acgccgcgta aataattctt      4800
     gcactatacc ccgttcactc aatttatagg gtcagtatgt cgatccacaa taacgaaaaa      4860
     tttcaatctt tttaattgta atcaatgact ttcattccat tttcatctgg taatattaca      4920
     ctccgaaaat cttacgtctt gcaacactct gtacacgaat cactcactac acactcgtaa      4980
     acgaaaacta tttcttattt acatcgtggt acacagcaat caacactacg actcacgcag      5040
     tcaacgcatg ccgcttccgc gccgtctcag accgcgatcc cgcaccgcaa tcaatagcgc      5100
     ttcgatcgat ttaaaagcgc cactcgatca agctcgcaac ctgccggact gtttcgtcac      5160
     gcaatgacga gacgggcggg aa                                               5182
//
ID   BEL-9_LH-LTR repbase;    DNA;    INV; 1193 BP.
XX
AC   ADOQ01017693;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_LH_;
KW   BEL-9_LH-I; BEL-9_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1193
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017693; Positions    1916    3108.
XX
SQ   Sequence 1193 BP; 373 A; 307 C; 239 G; 274 T; 0 other;
     tgttcaagat cgataattaa cgtaatagaa aaatagccgt aagaacgaag gaaaattcta        60
     ccagttgaac tgttatccta actgtacccg cactcagttt ttctccattc aaagggggcc       120
     aaaacaacaa acaaccgaat aaacaagcgg tgacagttac tgatttcagc aacattcgca       180
     acacatgaac gcaagcgtca cacaaatctt agccaatact cgatggcaat tctctcgcac       240
     acatgagtca caccaccaaa tcaccaatca tagacagttt gcaagggtca tcttgagaat       300
     caaaatgctt gcgatctcat tggcgaattt caagggaact tcggattttc aagctataaa       360
     aaccgctccg caccacgacg agacacagtc gctttcttaa gattctgtgc aatcgcaagt       420
     acgcgcgctg cagttactcc gctgagattc cgcaaaatcg cagacattac gtgtcgcgga       480
     aactaacacc gcatatcgca gtctaagtgt gcaaaccgaa acaatttgtt gaactgttgt       540
     actctccttt tctctttgca tttatttgcc tccatgagga caggtacata ccttaattaa       600
     acgaataaag aacttagttt agtgaaatca cgtcgtttct ttgattcatc ttccgtgcac       660
     ctcactgcct taacgacaaa tttcgacgcg cttccgaaca ttttggtcct tcgagccgga       720
     ttcaggaacg gcagccgcag aattcgtgag tgctccccag gtgcgtgagt gcaggagacc       780
     gaaaaagaga aaaggaaaaa atcaatatga gtatggactt gaacgtcctg ctgaacggcc       840
     aacgcgacat tcacggccgc atatcgttca gtggataatc tcaaaaaaat gggctcgcgc       900
     aacatcaccc tcagcgcagt cgagactcgc atcaaactta tcgaacaaaa tgggctaagt       960
     tcgagtcaca tcacgaactt attcgtgcta gctacaaaga ccggttcaac gaaagtgagt      1020
     acgtttcttc taactttttc gacaacgcgg aaatcactta cgtgcagcag cgtagtcaac      1080
     tcgtagaatg cgccgaacgg ttgaaagaac actccgcaac atccaatcca ccgcaagaga      1140
     accgcaatga gcgccatccg cagaccgcgc tcccgcgaat aaaactccag aca             1193
//
ID   BEL-9_MoPha-I repbase;    DNA;    INV; 6027 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6027
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1136-1136 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           674..5833
FT                 /product="BEL-9_MoPha-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="MADERTISMLKKKRGIIKSQLSKFTTYIDRFNDSRNL
FT                 TELTARLEKAEDLWADFDKIQTEIELEDDTETQSEHRDAFETAYFNVIGRA
FT                 RQLKHAGSQQASSDVQPQANHTCANQNVNLPILKLPEFNGEYSKWIQFNDT
FT                 FNAIIHNNNTLNITQKFYYLKSCLSGEAAQALDTLEVSDANYEVARDILRQ
FT                 RFENKNIIIHSHVRALFELSQVIKDSHTSLRSLIDSMSQHLRALRSLGQPV
FT                 DEWDSMIIFLITSKLDTITRREWEKATVKHSELPTTNSFKAFLNERCQFLE
FT                 KLARDDKQTNKQIGNKENKDKTRLGTLTCLASNLAKCLFCKGSHNIYSCKD
FT                 LLNLSVDKRLTQVKKLKLCTNCLRSNHFSRDCKAGGCKKCSGRHNTLLHFS
FT                 DSKGENERDDHSTANTNSENSVKESAVATHALQINNNSYILLATARIVIFD
FT                 NNGKPHQCRALLDNGSQSNFVTKRLSQKLGVAGTPIKLPVCGINQSVTTIS
FT                 HKINASVKSFYNDYKAELSFLVVENITQELPNKFYNISTLNIPDDLSLADP
FT                 RFNYPDRIDLLLGAGIFWELLCAGQIQLGKGRPFLQKTRLGWVISGPMAPM
FT                 CKETVSLCQVSTIQEVRDNLERFWEIEECFTAPKYTREESECEALFVKTAE
FT                 RDEQGRFTVQLPFRTNVNELGDSLNMTIKRFYALERRLAKDPDLKKQYLNF
FT                 MNEYQQLGHMTEITPEEKDLNSVYYLPHHSVVKESSTTTRVRVVFDASART
FT                 SSNLSLNDVLMTGPIIQDSLFAILVRFRVHKYVFTADVRKMYRQVNVYEPH
FT                 RNYQRIIWRPNEREPVRHFKLNTLTYGTASASFEAIRALHQTAIDKRDAYP
FT                 EACNIILMDFYVDDLISGSDTIKSAKDLVHNINTVLSSGCFQLHKWNSNNE
FT                 KIIESLQAEPSTDQIQLPQEVNSKTLGLSWNTSSDTLHYQASNISNKSTKV
FT                 TKRKILSFIAQLFDPLGLISPTIVIGKIIMQKIWKAGIGWDESLPLEIFTI
FT                 WNQFFEGMKNXNEISIPRCAWGQRYHSVQLHGFSDASEVAYGACIYVRSED
FT                 EAGNITSKILCAKSRVAPLKTVSLPRLELCGALLLARLHQQVVEALSRLDS
FT                 XHCDSFYWCDSTIVLSWVTTEPSRLKTFVANRTAEIQRLTDVNRWSHVVSD
FT                 ENPADIITRGMSLGKLATTRLWWHGPPWLKLKSEAWPIVNTVPQTTVLPEL
FT                 KDNEVVCTTVKFSCDLFHRFSSYTKLLRVTAYCLRFIKNVRGRQKCTGLLS
FT                 VNELNESLFTLVRMMQSMHFAPEINDLERKETIRANSRILSLNPFLDEHRI
FT                 LRVGGRLRYSELPYERRHPMLLPSNHSFTRMIIIHEHEKQMHAGLASTLAA
FT                 IRMRFWPLNSRSTVRKVISRCVICFRVNPKNTKYQMGNLPESRFNSDKPFA
FT                 VIGIDFAGPLVIKDGKLRNKKIIKCYLCVFVCFSTKAVHLEIVGDLTSDSF
FT                 LNALKRFVSRRGLCRHIYSDNATNFVGANKELNEIAKWLKCMDKNDKFIKF
FT                 CTQNLITWHFTPPHAPNFGGIWEAAVKSAKYHIKRIVGQAHLTFEELYTVI
FT                 TQIEAIMNSRPLMPISNDPNDMEILTPGHFLIGEPLTALPQNSVTELSTNR
FT                 LNQYQRLQQLVQHFWSRWNKEYVSSLQHRSKWKIDTPSKIKLGTMVILKED
FT                 HTPPQQWRFGRVMEIHPGKDGVVRVVSVKTVSGILKRSLGKICVLPLNETM
FT                 "
XX
SQ   Sequence 6027 BP; 1998 A; 1138 C; 1332 G; 1556 T; 3 other;
     ttggtccttc gagccggata ttcagaagta ataaggaaca agtttgtgca agcaacaatc        60
     ggaagtacgg cgtggcatag aaacgtcgag aaatccacac gagtgagctc tcaaagcaga       120
     atcaggcagg cggatctgca attcagcaca ttcgttgatg caaacatacg caagacaata       180
     atcgtacgca cggaatcgta agtccacaac aaagatttgc gattctacgc agcgtaacga       240
     taacgcaaaa cgatagaagg catcgtaatc gaaggccggc tgaacaagac tgttcaacgc       300
     agtaatcata aggcgtcgtg caagccaagg gcacgtgcgc cggcatcaaa ctwccagcaa       360
     gggcgagtag ccatatcaac cgcgtgagaa gcggaagaca cacggcggcg gccatagcag       420
     ccacaaggga cgcgggtgcg acacgtcggc agccatagta gcatcaaagg aattggcggg       480
     aacgacacac cagcggcctt agcagcaaag aattcgagtt cacggcacgt caggacagcg       540
     ggacccgagg tcatttgcga tcgcggcacg taagcagagt ggttcaccta tatcatttgt       600
     atcatttacg cgcataattg cgtgatcact gtcgagttaa ggcacattgt attcgcgtac       660
     aacacgagtc ggtatggcgg atgagcgaac gatcagtatg ttaaaaaaga aacgcggcat       720
     tatcaaaagt caattatcga aattcacaac atatattgac agatttaatg attcgagaaa       780
     cttgacggaa ttaactgcgc gactagagaa ggctgaagat ttatgggcag attttgacaa       840
     aatacaaacg gaaatcgagt tagaggatga caccgaaacg caatctgagc atcgcgatgc       900
     gttcgaaaca gcatatttta atgtaatagg tagggcgaga cagcttaaac atgcgggatc       960
     acaacaagcg agttcagatg tacagccaca agcgaatcac acgtgcgcta atcaaaacgt      1020
     aaatttgccc atattgaaat tgccagagtt caacggagaa tacagtaaat ggatacagtt      1080
     taacgataca ttcaatgcga taattcataa caacaatacg ttgaatatca cgcaaaaatt      1140
     ttattattta aagtcatgct tgagtggaga ggccgctcaa gcattagata cattagaggt      1200
     atcggacgcg aattatgagg tcgctcggga tatcttaaga caaaggttcg aaaacaaaaa      1260
     cattataata catagtcacg taagggcttt attcgaatta tcacaggtaa ttaaagattc      1320
     acacacatct cttagaagcc tcattgatag catgtcacaa catttgcgag ctctaaggtc      1380
     cttgggacaa ccggtcgatg aatgggattc gatgatcatt tttcttatta cgtcaaagtt      1440
     agatacgata acgcgtaggg aatgggaaaa ggcaacggtc aagcatagcg aattaccaac      1500
     caccaatagt ttcaaggcct ttttaaacga acgttgtcaa tttcttgaaa aattagcaag      1560
     agacgataaa cagacgaaca aacaaattgg aaataaagaa aataaggata aaacaaggtt      1620
     aggcacattg acgtgtttag catcaaacct tgcaaaatgc ttattttgta agggttcgca      1680
     taacatatat tcatgcaagg atttattaaa cttatcggta gataagcgat taacacaagt      1740
     caagaaacta aaattatgta cgaattgctt gagaagtaac cattttagta gagattgcaa      1800
     ggcaggtggt tgtaaaaaat gtagcggtag gcacaacacg ttattacatt tcagtgactc      1860
     caaaggcgaa aatgagagag acgatcattc gactgctaat acgaacagtg aaaacagcgt      1920
     aaaggaatcg gcggtggcca cacatgcatt acaaataaac aataattcat atatactgtt      1980
     agcgacggcc aggattgtca tattcgacaa caatggtaag cctcatcaat gcagggctct      2040
     attagataat ggatcgcagt caaattttgt tacaaaacgt ttgtctcaaa aattaggtgt      2100
     cgcggggacg cctataaagc ttccggtttg cggaatcaat caaagtgtaa cgaccatttc      2160
     acataaaatc aatgcctccg ttaagtcgtt ttacaatgat tataaggccg aattgtcatt      2220
     cttggtagtt gaaaacatca cgcaagaatt gccaaacaaa ttttataata tttcaacatt      2280
     aaacataccg gatgatctat cattagcgga tccgcgtttt aattatcccg ataggataga      2340
     tctactgtta ggcgcgggta ttttttggga acttctttgt gcaggacaaa ttcaattagg      2400
     taagggaagg ccattccttc aaaaaacgag attagggtgg gtcatatcgg gacctatggc      2460
     acctatgtgc aaggaaacag tatccctgtg tcaggtcagc accatccaag aagtgcgcga      2520
     caatttagag cgtttctggg agatagagga atgtttcaca gcaccaaaat atacacgaga      2580
     ggaatctgaa tgcgaagcat tattcgttaa aaccgcggaa cgcgatgagc aaggtcgatt      2640
     cacagtacaa ttaccgtttc gaacaaatgt aaatgaactc ggggattctt taaatatgac      2700
     aattaaacga ttttacgcat tagaacggcg gttagctaaa gatccggatc ttaaaaaaca      2760
     atatttaaat tttatgaacg aatatcaaca actcggtcac atgacagaaa ttacccctga      2820
     ggagaaggat cttaactcgg tctattattt gcctcaccat agtgtggtga aggaatcgag      2880
     cacaactaca agagtacgcg tggtattcga tgcatcagca aggacatctt ctaatttatc      2940
     gttgaatgac gtattgatga ctggcccgat tatacaagat agtttgttcg caatattagt      3000
     tcgttttaga gtgcacaaat atgtgtttac agctgatgta agaaagatgt acagacaggt      3060
     caatgtttat gaaccgcatc gtaactatca gagaattata tggcgcccaa atgaaaggga      3120
     acctgtacgg cattttaaat taaatacgct aacatacggt acagcgtcgg cttcatttga      3180
     ggctatacga gctcttcatc aaacagcaat agacaaacgg gacgcgtacc ctgaggcatg      3240
     taacattatt ctaatggact tttacgtaga tgatctaatc tcaggatccg atacaatcaa      3300
     gagcgcgaaa gatctggttc ataatataaa cacagtacta agcagcggat gttttcaact      3360
     acataaatgg aatagcaaca atgaaaaaat aattgagtca ttacaagcgg aaccgagtac      3420
     tgatcagata caactgcctc aggaagtcaa ttcgaagaca cttggtctgt catggaatac      3480
     tagtagcgat acattacatt atcaggcaag caacataagt aataaatcga ctaaggttac      3540
     taagagaaaa atattatcat ttatagcgca gttgtttgat ccgttaggat taattagtcc      3600
     gacgatcgtc atagggaaaa ttatcatgca aaaaatttgg aaggcaggaa tcggttggga      3660
     cgagtcgttg ccccttgaga tattcacgat atggaatcaa tttttcgagg gtatgaaaaa      3720
     catsaacgaa atttcgatac ccagatgcgc atggggtcaa cggtatcata gtgtacaatt      3780
     acacggattt agcgacgcct cggaagtagc ctacggcgca tgcatatatg ttagatcaga      3840
     agacgaagct ggtaatatca cgtctaaaat cttatgcgct aaatcacgcg tggccccgtt      3900
     aaaaacggta agtttaccgc ggctcgagtt gtgtggtgcg ttacttttag cgcgattgca      3960
     tcaacaagta gtagaggctt taagtcgtct tgatagtcwa cattgtgata gcttctattg      4020
     gtgcgattcc accattgttt tatcatgggt taccactgaa cccagccggt taaaaacatt      4080
     cgtagcaaat cgaactgctg aaatacagcg acttactgac gtcaatcgtt ggtctcatgt      4140
     ggtgagtgac gaaaatcccg cggatatcat aacaaggggg atgagtctag gcaagctagc      4200
     gacaactcgg ttgtggtggc acgggccacc gtggttgaaa ctcaaatctg aggcctggcc      4260
     tatcgtaaat actgttcctc aaactacagt ccttcccgag ttaaaggata atgaggtggt      4320
     atgcactacg gttaaattca gttgtgattt atttcatcgg ttctcatcat acacaaaatt      4380
     acttcgcgtt acagcctatt gcttgcgatt tattaaaaac gtaaggggga ggcagaaatg      4440
     taccggactg ttatcggtca atgaattgaa cgaatcatta ttcacgctgg ttagaatgat      4500
     gcaatccatg cattttgcgc ctgaaatcaa tgacttagaa cgcaaagaaa caatacgtgc      4560
     aaatagcaga atactgtcac taaatccatt cttagatgag catcgtatat taagagtagg      4620
     gggtcgttta agatattccg agctaccata tgagcggagg catccgatgt tgctaccgag      4680
     caatcattcg ttcacgcgca tgattataat tcacgaacat gaaaaacaaa tgcacgcagg      4740
     attggctagt acattagcgg caattagaat gcgtttttgg cctctaaata gccgtagtac      4800
     agtaagaaag gtaatttcgc gatgcgtaat ttgctttcgc gtgaatccga agaacacgaa      4860
     atatcaaatg ggaaatctgc cagaatcccg gtttaactct gacaagccat ttgcagtgat      4920
     cggtatagat tttgcaggac ccttagtaat taaagacggt aagcttagaa ataaaaagat      4980
     tatcaaatgt tacttatgcg tattcgtctg tttctcgacc aaggctgtac atctggagat      5040
     cgttggcgat ttaacgagcg attcgttttt aaacgcgtta aaacgatttg tatcgcgacg      5100
     cggattgtgc cgtcatatat attctgacaa cgccactaat tttgttggtg cgaacaaaga      5160
     attgaacgaa atcgctaaat ggttaaaatg catggacaag aatgacaaat ttataaaatt      5220
     ttgtacccaa aatttaataa cgtggcattt tactccacca catgctccaa attttggagg      5280
     catatgggag gcggcggtaa agagcgcgaa atatcatatt aagagaatag tgggccaggc      5340
     ccatctaaca ttcgaagaat tgtacacagt gatcacgcaa attgaagcga ttatgaattc      5400
     tcgaccatta atgccgatat caaacgatcc aaatgacatg gaaatattaa cgccgggaca      5460
     ttttttaatt ggtgagccac tcacagcgtt accacaaaac tccgtcacag aattatctac      5520
     taatcgattg aaccagtatc agcgtctaca gcagctcgtt caacactttt ggtcccgatg      5580
     gaataaggaa tatgtgtcga gtctgcagca tcgtagcaaa tggaaaattg acacgccgtc      5640
     aaagattaaa ctaggtacca tggtaatatt aaaggaggat catacaccgc cacagcaatg      5700
     gcgttttggt cgcgtaatgg aaattcatcc tggtaaggat ggagtagtac gtgtggtaag      5760
     cgtaaagaca gtcagtggaa tattgaaacg atcgctggga aaaatttgcg tattaccctt      5820
     gaacgaaacc atgtaaaact caaccaaatt ttaaagacta tatgattgta actcatttta      5880
     cgcgagactg attagtatta agacgcgtat tattattatt tttttttatt attattttat      5940
     tttatatgta tataaaggaa atacttattt agtataatac tcattataag attattcatt      6000
     gaaagcggcc tttcaagggg cgcggga                                          6027
//
ID   BEL-9_MoPha-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   03-DEC-2021 (Rel. 27.02, Created)
DT   03-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-283
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1155-1155 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 283 BP; 86 A; 57 C; 66 G; 74 T; 0 other;
     tgtccgaact cgtagttcgc gatttagggc cgatagcgct catggatgtg ataatataac        60
     tagcttgtaa gtcaatgcaa tagatgtcat tcttatagct ggcggggcga aagggaagag       120
     aggagaaacg agtcagtcgc ctgtaaccac tcgtgcgaga cgcttgcaca aataaagtaa       180
     aatatattta gtagtgtttc ttatacattt tgagcgttgt ttttcaaccg catccctaaa       240
     catccagaga cagcacgatc cattcggatc actgaacgaa aca                         283
//
ID   BEL-9_SI-I  repbase;    DNA;    INV; 6453 BP.
XX
AC   AEAQ01023320;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SI_;
KW   BEL-9_SI-LTR; BEL-9_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-6453
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023320; Positions    6792     340.
XX
CC   Positions [5364-5939] - Integrase core
CC   'GATGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1089..5357,5361..6281)
FT                 /product="BEL-9_SI-I_1p"
FT                 /translation="MAENADIQRLKVKRRIAKAGFTRTENFIKSMQPDTVD
FT                 IDELRIKLDKLAELRKSIEECVIELAVYDIEATDEQIDQQIASYEEKYIGL
FT                 KLMGERVIKAREKPAAASDSNHLEQVIAGPSPFAYNTRNRTQETHIRLPKI
FT                 ELPNFSGAYEEWHSFFGIFDSLIHSNDSLNNIKKFHYLKSALKGEAAEIID
FT                 SLEITDANYRDAWSRLKNRYDNERIAIQNHIKAIFELPVTKRENGNTLRNI
FT                 LDSTLKHTRALAALNRPVNEWDDLLIYIIRSRLDYLTIKEWENSLESKQML
FT                 KFKEFVDFLTKRCETLEAVARRSPAIEFNRTRQNFGKVTTVHAAITGVKCA
FT                 HCKGDHQIYQCREFKELPVADRLSKVKSLRLCLNCLKGKHTVKDCIASTCR
FT                 KCTKRHSTLLHDDRYSTKDDKEETVKSNREDETNKKDNTICIHAQLTRLKN
FT                 ATQAILSTATVLVKDNKGKYIEGKALLDSGSQSHFVTEEFIKKLGLKTKND
FT                 LIKVNGINKQASHALKSVDLHVTSRFGTFSMDMSYIILPNIVENLPTIESR
FT                 VADWDIPKNIKLADPQFYRSSKIDILLGTEKFWELLCIGQIKLGKNKPIIQ
FT                 KTLLGWVVSGTVDISNSDRNGQTSCNLSTMEILNQTVQKFWEIEGFQNDKK
FT                 LTSEEKYCEELFNSSYKRQTDGRFIVKYKKEVLPLLNDSREIALKRFLSLE
FT                 RKLSKQPTFKEEYVAFMREYQQLGHMTRVNTNKENKFRVFLPHHAVIKETS
FT                 TTTKTRVVFDASSQSSQGRSLNDAMYKGPVLQSDLFSLIIQFRCFKYVLCA
FT                 DIEKMYRQILISDEQRALHSILWREDPKEEIQEFELNTVTYGTKSASFLAV
FT                 RCLIQLAESESDNFPKAAEVIRNQFYMDDLLTGGNTETEIIKLKEDLTKLL
FT                 AKGGFRLHKWKTNYHKSYENNQSVDSTDSNKDCVDIVKEKESKLLGVLWNP
FT                 HHDTFHYEITQGDHEPRVTKRVVLSQVCKLFDPLGLVGPVVTSAKILMQEL
FT                 WSLKINWDESIPMHLYKSWCQIRSQLTLLNELRIPRLIISKKNESVIQLHG
FT                 FCDASQKAYGACVYIRERDKQGNIKVTLICSKSRVAPMKILSLPRLELCGA
FT                 VLLVNLMSRVLGSLKFELEQRFYWTDSKIVLAWIGSLSRRWHVFVANRVSE
FT                 IHSNSSPSQWKHVGSKDNPADLISRGTTPEQLINCDIWWNGPHWLRQEVEV
FT                 WPREGEELLKDIPEEKKQSIVASATNCETIIEYNRFSSLYKLFRVSAYVLR
FT                 FIYNIRNNKKDRIEGAINAKDLKRAKLTIVKLVQAEEFKEDIRRLKTDNKL
FT                 QRSSRLISLLPFLDDKGILRVGGRLRHATIPEEAKHPAILPSRHHVTRLLI
FT                 VHYHEKLFHAGVQTTLNSIREEFWPILARNSVKEIIHKCVQCRKASPKASW
FT                 QLMGQLPDVVNAARPFYNTGVDYCGPFYVRDRIRRNSKQYKAYVSIFVCMA
FT                 VKAVHIELVEDLTTDSFIAALKRFVARRGKVKNIYSDNGTNFVGADRVLQN
FT                 TLKDKEFKKEIQDFATREMINWHFIPARCPHYGGLWESAVRLLKLHLRRTI
FT                 GESCLTVSEMTTVLVQVEAVLNSRPLTPLSEDPNDLHALTPGHFLIGENLQ
FT                 VYPDIDLRDVPENRLSRWQHVEQLKQRFWYRWQREYLNTCQQRTKWKSKAK
FT                 ESFKVGQLVMLKEGENKPLKWMLARILEIHPGSDNLVRAVTLKTERGIYKR
FT                 AVVNIAPLCD"
XX
SQ   Sequence 6453 BP; 2310 A; 1132 C; 1410 G; 1601 T; 0 other;
     tggtccttcg agccggatcc cggaaaaata aagccgggaa gaagaaatca acgaaacgtg        60
     ccgggcgcaa aatgggaaaa gccccgtgaa gagacaagct tcggactttc gtgcaaaccg       120
     cacaaggcag atacgcagca gtggccaagg tatcaaggaa gagagctaga aggcacgggt       180
     agtgtttcca gcattattac aaggaaagag aagcggtctc caagcgggcg agtccaccat       240
     tccaagcgac gagtccacca ttccaagcgg acgagtccat tattcgctgg aggaaatccg       300
     ccatcttgag cgtgagttca acattcacaa acgaggcgac gagccttcgt acaagaagga       360
     acgctcggaa aacgaggcgg cgagtcctca cattggaggt tattggttct acctggcata       420
     aggcggtgag caatatccat aacaaatacg taagtgacga cgagagcaca tacatacgta       480
     gcaacgtaca cacgtacgtg aaggcgagtg cgcatacata cgtagcggtg cgcacacgca       540
     tgcctgacga cgagtgcgca tacacaagta gcgacgtaca cacgtacgtg acgacgagtg       600
     cgcacacaca cgtagcggcg agcacacgca tgcgtgacgg cgagtgcaca tacaagcgtg       660
     gcggcatagc tctacacacg cagcagagca gcaaacatac aagcgtggcg gcgtagctct       720
     acacacgcat acatcaggaa cagcgagttc ttcacacaga gcagcgagca tacacgtggc       780
     ggcgaagctc tacgcacgtg acagcaagtc cttcacacac gaggcggcga gtcctagtac       840
     aagggggacg agtttctttc tacaaacgag gcagcgagtc ttcgtaaata gcgattaatt       900
     cgaatttatt gaagtaagcg agcaaatagt cacaaaaaac gtaagacaca taacctcttc       960
     caggttaggc acacgcaaat gcaagtttgt aaatttctta ataattggtt gcgacaaaat      1020
     atttctacga tattcggtag tactagcgtt attacaaatc ttaaggttac gcgaaaatta      1080
     aaggtaaaat ggccgaaaac gccgacatac aaaggctaaa ggtaaaaaga aggatagcga      1140
     aggctgggtt cacgcgcacc gaaaatttca taaaatcaat gcaacctgac acagtagata      1200
     tagatgaatt aagaataaaa ttggacaaat tagcagaatt acgaaaatca atagaagaat      1260
     gcgtaataga gttagcagtt tatgatattg aggcaactga tgaacaaatt gatcagcaaa      1320
     tagcaagtta tgaagaaaaa tatataggtt taaagttaat gggtgagaga gtgataaaag      1380
     cgcgcgagaa accagctgct gcatcagata gcaatcatct cgagcaagtg atcgcgggac      1440
     catctccgtt tgcatataat acaagaaata gaacacaaga aacgcatatt agattgccaa      1500
     aaattgagtt gcctaacttt agcggagctt atgaagaatg gcattcgttt tttgggattt      1560
     ttgattcact aattcattca aatgactcgt taaataatat caaaaaattt cactacctaa      1620
     aatcagctct aaaaggtgag gccgcggaga tcatagactc attagaaatt acggatgcga      1680
     attaccgcga cgcttggtcg agattaaaaa acagatatga taatgaaaga atcgcaattc      1740
     aaaatcatat caaggctata tttgaattac ctgtaacaaa aagagaaaac ggcaatacgt      1800
     taagaaacat attagatagc actttaaaac acactcgagc tttagcagca ttaaatcgtc      1860
     cagtaaacga atgggatgac ttgttaatat atataataag aagtaggtta gattatctta      1920
     caatcaagga gtgggaaaac agtttagaaa gcaaacaaat gctaaagttt aaggagttcg      1980
     tagatttttt aactaaaaga tgcgaaactc tagaagcggt agcgagacgg agtccagcca      2040
     tagaatttaa tagaactcgt caaaatttcg gaaaagtgac gacggttcac gcggcaataa      2100
     caggtgttaa atgcgctcat tgtaagggag accatcagat ttatcaatgt agggaattta      2160
     aagagttacc agtagcggat cgtttaagca aggtcaaatc cttaagatta tgtttaaatt      2220
     gtttaaaagg taaacataca gtaaaagatt gcattgccag tacttgcaga aaatgtacaa      2280
     aaaggcatag cacgttgctt cacgacgatc gttactctac aaaagacgac aaagaggaaa      2340
     cggttaaatc gaatcgggaa gacgagacaa ataaaaaaga caacacaata tgcatacatg      2400
     ctcaattaac aagattaaaa aatgctactc aggcaatatt atctacagca acagtattag      2460
     ttaaagataa taaaggaaaa tatatagaag gaaaggctct gttggatagc ggatcccaat      2520
     cccactttgt cacggaagaa tttatcaaga aattagggct aaaaactaaa aatgatctaa      2580
     ttaaagtaaa cggtataaat aaacaggcgt cgcatgcctt gaaatctgta gatttacatg      2640
     taacctctcg ttttggtacg ttcagtatgg acatgtcata tataatattg cctaacatag      2700
     tagaaaattt acccacaatc gagtcaagag tagcagactg ggatattcct aaaaatatta      2760
     aattggccga cccacagttc tatcgctcaa gtaaaataga catattatta ggaacagaaa      2820
     agttctggga gttattgtgt ataggtcaaa tcaaattagg aaaaaacaag cctattattc      2880
     aaaaaacact actaggatgg gtggtttcag gtactgttga cataagtaat tcagatagaa      2940
     atggtcaaac tagctgtaat ctcagtacaa tggaaatttt aaatcaaacg gttcaaaaat      3000
     tttgggagat agagggtttt caaaatgata agaagctcac ctcagaagag aaatattgcg      3060
     aggaattatt taattctagt tataaacggc aaacagatgg cagatttata gttaaatata      3120
     aaaaagaagt gctaccttta ttaaatgact caagagaaat agcgttaaag cgttttttat      3180
     cactagagcg aaaactcagt aaacaaccta cattcaaaga agaatacgtt gcattcatga      3240
     gagaatatca gcaattagga catatgacac gagtaaatac aaataaagaa aacaagttta      3300
     gagtttttct tccgcatcac gcggtaataa aagaaactag cacaacgacc aagaccagag      3360
     tggtctttga tgcttctagc caatcttctc aaggccgatc gctaaatgat gctatgtata      3420
     aaggtcctgt attacaatcg gatttattct ctttaataat tcaattcaga tgtttcaaat      3480
     acgtgttatg tgctgacatt gaaaaaatgt acagacaaat attaataagt gatgaacaaa      3540
     gagcactgca tagcatcctt tggcgtgaag atccaaaaga agaaatacag gaatttgagt      3600
     tgaatactgt aacttatggc actaaatcag cttcttttct agcagttaga tgtttaatac      3660
     aattagcaga atctgaaagt gataattttc cgaaagctgc ggaagtcatt cgtaaccagt      3720
     tctacatgga tgatttgcta acagggggta atactgaaac agaaattata aaactaaaag      3780
     aggatttaac taaattatta gctaaaggag gttttagatt gcacaaatgg aaaaccaact      3840
     atcataagtc ctacgaaaat aatcagtcag tagacagcac agacagtaac aaggattgcg      3900
     tagatattgt taaagagaaa gaatcaaaat tgcttggcgt attatggaat ccacatcatg      3960
     acacatttca ctacgaaata actcaagggg accacgagcc tcgggtaaca aagcgagtag      4020
     tactgtcgca ggtgtgcaag ttatttgatc cgttgggttt ggtagggcca gtggtgacat      4080
     ctgccaaaat attgatgcag gaattatgga gtttaaaaat taactgggat gaatcgatac      4140
     ctatgcactt atacaaaagt tggtgtcaaa taagatcaca attaactttg ctaaacgaat      4200
     tacgaatacc gagactaata atttccaaaa agaatgagtc agtaatacaa ttacacggtt      4260
     tttgtgacgc aagtcagaaa gcatatggcg cctgtgttta cattcgcgaa agagataaac      4320
     agggaaatat taaggttaca ttaatttgct ctaaatcacg tgtagcgcca atgaaaatct      4380
     tgtcattacc aaggttagaa ttgtgtgggg cagtcctatt ggtaaatctg atgagtcgtg      4440
     tactaggcag tctaaaattt gaattagaac aaagatttta ctggaccgat tcaaagatag      4500
     tacttgcatg gataggctcc ctctcacgaa gatggcatgt gtttgtcgcg aatcgcgtta      4560
     gcgagataca cagcaattcg tcaccttctc agtggaaaca tgtgggatct aaagataatc      4620
     ctgctgacct tatatcaagg ggtacaaccc cagaacaatt aataaactgt gacatttggt      4680
     ggaatggacc acactggttg aggcaagagg ttgaagtttg gccgcgggaa ggtgaagagt      4740
     tgttaaaaga cattcccgaa gaaaagaaac aatcgattgt agcatcggct actaattgcg      4800
     aaacaatcat agaatataac cgattttctt ctctttacaa attgtttaga gtaagcgcgt      4860
     acgttttaag attcatttat aacattagaa ataataagaa agatcgaata gaaggcgcga      4920
     taaatgcgaa ggatctcaaa agggcaaaat taacaatagt taaattagtg caagcggaag      4980
     agttcaaaga agacataaga agactaaaaa cggataataa actgcaacga agttcaagac      5040
     tgatatcact cttaccgttc ctcgatgaca aaggaatact acgagtaggt ggcagattga      5100
     ggcatgctac cataccagaa gaggctaaac atcctgccat actcccctct cgtcatcatg      5160
     ttaccagact gctgatagtg cattatcacg agaagctttt tcatgcagga gtgcaaacta      5220
     ctttaaactc gatacgagag gaattctggc caatcttagc gagaaacagc gttaaggaaa      5280
     ttatacataa atgtgttcaa tgtcgaaagg cgagcccgaa ggctagttgg cagttgatgg      5340
     gacaactgcc ggatgtttga gtaaatgctg ccagaccatt ctacaataca ggagtagact      5400
     actgcggacc cttttatgta agagaccgta tccgccgtaa tagtaagcaa tacaaagctt      5460
     atgtgtcaat cttcgtgtgt atggcagtta aggccgtaca tatcgaactg gtagaggacc      5520
     taacgacgga ctcatttatt gcggctttaa agcgatttgt ggcaagaaga ggtaaagtaa      5580
     aaaacatata ttccgacaat ggaacaaact ttgttggagc ggatcgagta ttgcaaaata      5640
     ccctgaaaga caaggaattc aagaaggaga tccaagattt tgcaaccaga gaaatgataa      5700
     attggcactt cataccggcc aggtgtccac actatggagg tctttgggaa tcagcagtgc      5760
     ggttactaaa gctacattta agacgcacta taggcgaatc atgtctaact gtttctgaaa      5820
     tgacgactgt attggtacaa gtcgaagcag ttctaaattc cagaccatta actccgttgt      5880
     cagaggaccc aaatgatctg cacgcattaa caccaggtca ttttttaatt ggtgaaaatt      5940
     tgcaagtgta tcctgacatt gatctaagag atgttccaga aaaccgatta agcagatggc      6000
     aacatgtgga gcaacttaaa cagcgatttt ggtacagatg gcaacgggaa tacctaaata      6060
     catgtcaaca gagaaccaag tggaagtcta aggccaagga gtcgttcaag gttggtcagt      6120
     tggttatgct gaaggagggt gaaaataaac cattaaaatg gatgttagca aggatcttgg      6180
     agatacaccc tggttcagac aatttagtga gagcagtcac cttaaaaacc gaacgtggaa      6240
     tttataaaag agctgtcgtt aacattgccc cactatgcga ctaaacgatg tgatgtcata      6300
     cgttatatta gttatgtaag agtttatagt ttatttgttt aaaatttttg cgtttaattt      6360
     agaatagata gcgatctcat aaatggtaga gttacttgaa gaattttatg ttgaaaataa      6420
     aaacaatttt tttatttgtc aaggggggcg gcg                                   6453
//
ID   BEL-9_SI-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   AEAQ01023320;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SI_;
KW   BEL-9_SI-I; BEL-9_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-266
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023320; Positions     339      74.
XX
SQ   Sequence 266 BP; 78 A; 58 C; 51 G; 79 T; 0 other;
     tgttctgatt ggacgttgat tataattttg ttagtgagaa aaatgttcct agcgagcgtg        60
     gcgctgttag cgtaacttag ggtactatac tcttaatggt tcatgaccga tctctctctc       120
     ttcgcctagc tacggacgtg tgtgccacga aagagcaagc tctcctgtaa actataataa       180
     agcaagttgt aatcaaccca agaagcctac aagattaatt cgtctaatcc cacggcttca       240
     ctacagtcaa acacaattaa tttaca                                            266
//
ID   BEL-9_SiCu-I repbase;    DNA;    INV; 5874 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5874
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4984-4984 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..5872
FT                 /product="BEL-9_SiCu-I_1p"
FT                 /note="DUF1759, reverse transcriptase, ribonuclease
FT                 H, and integrase."
FT                 /translation="MEDSSSSSQETVQPRQSARSNKGVPPKRFPEEVPEFA
FT                 KPVFSRTILSGGLQMSRVTVQVPDTVPERGNGMASNSQMEGGGAANQEDAA
FT                 DVKVEGAESMAFQRERTSAPGSRASMSRSERERKKLELEKLGLQITQAEEM
FT                 LKVNTLRQKQIDLHIELLADELGMEGGSQYLGSDDEGLEDFGDYEDGDGAD
FT                 AAKGXEGYKARDAKVDKHPGTATGANGEPQVPVGNPYRFVPTPVPRRTAQS
FT                 KRNPEAKAQIDMMPISNPPPRPPRRRDGAPPQFNPHLFSTPHQNAPQVAPQ
FT                 NYQRVDPASHLQNPPPTSSVEALTLALVQAFQQQNANTERFVARQSQESKL
FT                 PTFSGNPLDWPIFIHHYRQSTADCGYTPAQNMARLEKAVQGQARKAVQALM
FT                 IVPTNADVVVTTLEQRYGRPEYVIQSLVDLAKRTPSPKEGRLSSIQDYANN
FT                 INNLVTTIQALNQPAHLQNPQLIKELVDKLPDGMRLQWGEYVITRADGVTL
FT                 SDLRFWINKKAAAASIVTIPEFRRTRSGDNVMAAVXEGSVRKCPICGGTGH
FT                 GAAXCKEFQSNSLDGRWQLTKQKKLCICCLNGGHGIKICRRKRLCNIGGCQ
FT                 RNHHPLLHGDGKKKESDQQAKSGSADSSKNDKEELNGFSSQGSRSVLLRMA
FT                 AVKLYGPNGEIVEQNAIFDECSTVTIMDAELANELNLAGPTDPLRLRWTNG
FT                 KSQEDFHSRRVSCGIGPAGGKGRFAMTNVRTVKNLSLPTQPIKYERLCEKW
FT                 SHLKSVKLPDMDSSRPRLLIGQPHIHLTVARKVIEGSGXSPILTKTRLGWV
FT                 VHGPLGGNVAEEFTFSAFHXVDSDILHDLVKESFRLESIGIKPLNPRSRED
FT                 IRAEKKMEELTRRVGDRWETGLLWKMNDEDIHLPGSYEVALHRLRGVESRF
FT                 RRDPGLKQQYXAKLNHYLDCGYARKLSPEERKVFTKKEWFQPHFPTFHPNK
FT                 PGKPRIVFDASSKSNGVSLNSFLYTGPDLLVSLPGVLLKFRQRKVAFTGDI
FT                 TEMFHQVKIRKEDCPAQRFLFREDPEGPVDVYQLEVMMFGSVCSPYCAQYV
FT                 KNRNAMEFESEFPAAVHAITGKHYMDDYLDSCDNEAEAEKIIAEVAEVHGR
FT                 GGFVIGKWVSNSLHLQQKLNAGNEDATSKDISQWSEIRTERVLGLHWEPKQ
FT                 DIFTFRVNLERAGNGVADGTKRPTKREVLRLVMLIFDPLGLILHYTMKARI
FT                 FMQHVWKSRIGWDDEVPTELWTKWRKWIVDLTKIAKVQVPRCYSSKMTNSE
FT                 DVQLHVLADASESAMIAVAYLRIATEDQVKLAFVMARGRVSPLRTVSIPKL
FT                 ELQAAVIAARLGQFILTELEIKPTKVKYWTDSQTVLKWIRSDSRRFQQFVA
FT                 HRIGTIHEITNVADWMWVPTKMNVADDATREGKTDLSPESRWWTGPKFLSL
FT                 EESEWRHEVPADSDGPELELKKEFLLAAVEVPEIPVPVLEHFSKYTPLVRA
FT                 AARVLKFLEILKSRRRGEKCNVTQLPMMTAENWLFRKAQWDSFPEEXNALE
FT                 NGLPIQKNSKLFQLSPVLDXNGVLRMNSRLANVKLESLRQPVILDSKHYLT
FT                 KLIIQRYHVLGLHQGQEFVKNEIRQRFWIPNLRAAVRRCWSDCKFCKIRRA
FT                 KPSPPMMGVLPLARIEEQSRSFSIVGMDYFGPIEVTVGRRHEKRYGVLFTC
FT                 MTTRAVHLEIASSLTTDSCIMAIRRMTARRGQPKEIFSDNGTNLRGADKEL
FT                 QQALDELDQEAMTETLAXKGITWHFIPPSAPHMGGSWERLVRSVKTSMSVI
FT                 MKSRYPKEEVLHTVMLEAEAVVNSRPLVDVPMDPSAPEALTPMHFLIGTSS
FT                 TLQPPGSFDDKDLILSKRWRTSQRLADMFWQRWRKEYLPTLQRRAKWHGAV
FT                 PNIELGDMVIVLDESLKRGHWPLGVITKVIPGNDGVVRVAEVKTATGTYRR
FT                 PVVKLAKLDVRTEDGFRSEIGGK"
XX
SQ   Sequence 5874 BP; 1678 A; 1292 C; 1656 G; 1229 T; 19 other;
     tagtggtcct tcgagccgga tcccaggtgc tatggaagac agttccagta gttcacagga        60
     aacggtacag cccagacaaa gcgctcgctc caacaaagga gttccgccga agaggttccc       120
     agaagaggtt ccagaatttg ccaaaccggt attctctcgg acaattctca gtggaggact       180
     gcagatgtcc agggtcactg ttcaggttcc agatacggtt ccagaacgcg gtaacggcat       240
     ggctagcaat agtcaaatgg aaggcggtgg cgcagcaaat caagaggatg cagctgacgt       300
     caaggtggag ggagcagaat caatggcctt tcagagggaa aggacttcag ctccaggttc       360
     cagagcatct atgtccaggt ccgaaaggga gcggaagaaa ctggaactgg agaaattggg       420
     gctacagatt acacaggcgg aagagatgct gaaagtcaat actttacgcc aaaagcagat       480
     tgacctccat attgaactgc ttgcggacga gttgggaatg gaagggggct cgcagtatct       540
     ggggagcgat gatgagggcc tggaggactt cggggactac gaagatgggg atggagcgga       600
     tgcagccaag gggamcgagg gatacaaggc cagagatgca aaagttgata agcatcctgg       660
     cacggctaca ggagccaatg gagaacctca agttccagtg ggcaatccgt atagattcgt       720
     cccgactcca gtgccgagga ggaccgctca gtcaaaacgg aatcctgagg cgaaggctca       780
     gattgacatg atgcctatct ccaatcctcc gccaaggcca ccaagaagga gggatggagc       840
     accgccgcag tttaatcctc acctgttctc aacgccacat cagaacgcgc cacaggtggc       900
     accacagaat tatcagagag tggatcctgc aagtcacttg cagaatcctc cgccgacttc       960
     cagcgtcgag gcacttacat tggcgttggt ccaggcgttc cagcagcaga atgcgaacac      1020
     tgaaaggttc gtagcacgac agtcgcagga aagcaaactt cctactttta gtgggaatcc      1080
     tttggactgg ccgatwttca ttcaccatta tcggcaatca acagctgact gtggctatac      1140
     tccagctcaa aatatggcga gactggagaa ggcggtacag ggacaggcga ggaaggcggt      1200
     gcaggcgttg atgatcgttc caacaaacgc agatgtggtg gtcacaacac tggagcagcg      1260
     atacgggagg ccggagtacg taattcaatc gttggtggat ttggccaaga ggactccgtc      1320
     gcccaaagaa ggaaggctct ccagtatcca ggactatgcc aacaacatta acaatttggt      1380
     tacaacgatt caggcgttga accaaccagc tcacctccag aatccccagc tcatcaagga      1440
     actggtggat aagcttccag acgggatgcg actccaatgg ggcgagtacg tgatcacmag      1500
     ggcagacggg gtgacgctga gtgacctgag gttctggata aataagaagg ccgctgcagc      1560
     aagtatwgtc accattccgg agttcagaag gacccgcagt ggagacaacg tgatggccgc      1620
     cgtagawgag ggttccgtca gaaaatgtcc aatttgtggc ggaacaggtc atggggcagc      1680
     tgsgtgcaaa gagttccagt ccaattctct ggatggaaga tggcagctga ccaaacagaa      1740
     aaagctttgc atttgttgtc taaatggcgg ccacgggatc aagatttgca gaagaaaaag      1800
     actctgcaat attgggggct gccagcggaa ccatcaccca ttgttacacg gggatggaaa      1860
     gaagaaagaa tcggaccaac aagccaagtc gggcagtgct gactcctcca aaaatgataa      1920
     ggaggagctc aacggattct ccagccaagg ttccagatcc gtgctgctga ggatggcagc      1980
     agtaaaactt tatggtccaa atggcgagat cgtggagcag aatgccattt ttgatgaatg      2040
     ctccacagtc accattatgg atgcagaatt ggcaaacgag ctaaacttgg ctggaccaac      2100
     agatccccta cgactgagat ggacgaatgg aaagagtcaa gaggacttcc attccagaag      2160
     agtatcctgt ggaattgggc ctgctggagg aaagggaagg tttgccatga ccaatgtccg      2220
     gacggtaaag aatttgtctt tgccaacgca gccaatcaag tatgaaaggc tgtgcgaaaa      2280
     atggagccac ctgaagtcag ttaagttacc ggacatggac tccagcagac caagattgct      2340
     aattgggcag cctcatatcc atctcaccgt ggcgagaaaa gtaattgaag gaagcgggga      2400
     ktcgccaata ctcaccaaaa ccagacttgg atgggtggtc catggmccgt tgggaggaaa      2460
     tgtggcagaa gaattcacat tttccgcatt ccatgamgtt gactcggata tcctccatga      2520
     cctggtgaag gagagcttca gactggagag cattgggata aaaccgttaa atccccgctc      2580
     cagagaagat atccgagcag agaagaaaat ggaggaactc acgaggcgtg taggtgacag      2640
     atgggagacg ggtcttctat ggaaaatgaa tgatgaagac atccatttgc caggcagcta      2700
     tgaagtggcc ctgcaccgtc twcgtggagt ggaatccaga ttcagaagag atccaggtct      2760
     gaagcagcag tacktggcaa aactcaatca ctatttggat tgtggttacg ctagaaaact      2820
     ttcaccggaa gaaaggaaag ttttcacgaa gaaagaatgg ttccagcckc attttccgac      2880
     ctttcatccc aacaagccgg ggaagccaag aatagttttt gatgcctcca gcaaatcaaa      2940
     tggagtgtcg ttaaatagct tcctctacac tggaccagac ttgttggtgt cgctgcctgg      3000
     agtgttactg aagttcmggc agagaaaggt ggctttcact ggggacatta cggagatgtt      3060
     tcaccaggtg aaaataagga aagaggattg tccagcccaa aggttcctat tcagagaaga      3120
     cccggaagga cctgttgatg tctaccaatt ggaggtgatg atgttcggtt ctgtctgttc      3180
     accgtactgc gcccagtacg tgaagaaccg aaacgcaatg gagttcgaga gtgagtttcc      3240
     tgccgccgtc catgccatca caggcaaaca ttatatggac gattatcttg attcctgtga      3300
     taacgaagca gaagctgaga agataatagc tgaggtggct gaagtccatg ggcgcggagg      3360
     atttgtcatt ggaaaatggg tctccaactc actccatctc cagcagaaac tgaatgcagg      3420
     aaatgaagac gccacctcca aagacatcag ccaatggtca gaaatccgaa ccgaacgggt      3480
     gcttgggcta cattgggagc caaagcagga catattcaca ttccgggtga atttggaaag      3540
     ggctggaaat ggcgtggcag acggaaccaa gcgacctaca aagagggaag tactcagact      3600
     ggtgatgctg atattcgacc ctctgggatt gattctccat tacaccatga aagcaagaat      3660
     tttcatgcaa catgtgtgga aatccaggat aggatgggac gatgaggtgc cgacggagct      3720
     ctggacaaaa tggagaaaat ggatagtgga cctcacaaaa atcgctaaag tgcaggtacc      3780
     acgctgttac tcatcgaaga tgacgaacag tgaagatgtt cagctccatg tcctggcgga      3840
     tgcctcagag tcagcaatga tcgcagtagc ttacctgcga atcgccacag aagaccaagt      3900
     caagttggcg ttcgtgatgg caagagggag ggtctcacct ttgaggacgg tgtccatccc      3960
     aaaactggag ctgcaagctg ccgttattgc tgcaagactc ggtcaattta tcttaacaga      4020
     attagagata aagccgacca aagtgaagta ctggacagat tcccaaacag tactgaaatg      4080
     gataaggtca gactccagaa ggttccagca gttcgtggcg catagaattg ggaccatcca      4140
     tgagatcaca aatgttgcag attggatgtg ggtgcctacc aagatgaacg tagcggacga      4200
     cgccacgaga gaggggaaaa cggacttgtc tccagagagc cgttggtgga ccggacctaa      4260
     atttttatca ctggaggagt cagagtggag acatgaagta ccagctgatt cagatggacc      4320
     agaattggaa ttgaagaaag aatttcttct tgctgccgtg gaagtgccgg aaataccagt      4380
     tccagtgttg gagcacttca gcaaatacac gccgttggtc cgtgctgctg ccagggtcct      4440
     caagtttctg gagattttga agtcaaggcg gaggggtgaa aaatgcaatg tcactcagct      4500
     accaatgatg actgcagaaa actggctgtt caggaaggcg caatgggatt cttttccaga      4560
     agaawtgaat gctctggaaa atggactgcc aatacagaaa aatagcaaac tgttccagct      4620
     ttctccggtg ctggatmaga atggcgtcct ccgcatgaac tcacgactag caaacgtgaa      4680
     gttggaatcc ttgaggcagc cagttatctt ggacagcaag cactacctca cgaagctcat      4740
     catacaacga tatcatgtgt tgggtcttca ccaaggtcaa gagttcgtga agaatgaaat      4800
     ccggcagcgc ttttggattc caaacttgag ggcagcagta cgaagatgtt ggagtgattg      4860
     caagttttgc aaaatcagac gagccaagcc atctcctcca atgatgggag tccttccact      4920
     ggcgaggatt gaagagcaaa gtcgaagctt ttcaatcgtg ggaatggact atttcggtcc      4980
     cattgaagtt accgttggtc gccgccatga gaagagatac ggggtgctgt ttacctgtat      5040
     gacgacgaga gcagtacacc tggaaattgc aagcagtctc acaaccgaca gctgcattat      5100
     ggccattagg aggatgacag ctcgccgtgg tcagccaaag gagatattta gtgacaacgg      5160
     cactaatctc cgcggtgcag ataaggagct acaacaggca ttggacgaac ttgaccagga      5220
     ggcgatgact gaaacgttgg ccgwgaaggg gattacctgg cactttattc ccccatcagc      5280
     accgcatatg gggggaagct gggagcgctt ggtcaggtcc gtgaagacgt ccatgtcggt      5340
     catcatgaag agtcgctacc caaaggagga ggtmcttcac actgtgatgt tggaagccga      5400
     ggcagtagtc aatagccgtc ctctggtaga tgttccaatg gacccttcag ctccggaagc      5460
     attgactcca atgcacttcc tcattgggac gtcaagtacg ctacagcctc cagggtcatt      5520
     tgatgacaag gacctgattc tgagcaagag gtggagaaca tctcaaaggc tggctgacat      5580
     gttttggcag agatggcgaa aggagtacct gccaacattg caaagamgag cgaagtggca      5640
     tggagctgtt ccgaacatag aattggggga catggtcatc gttttggacg aaagcttgaa      5700
     gaggggacat tggccacttg gagtcattac caaagttatt cctggtaatg atggagttgt      5760
     tcgwgttgca gaagtaaaga ccgcaaccgg aacttaccga agacctgttg tcaagttggc      5820
     caagctggat gttcggacgg aagatggatt tcgttccgaa atcgggggga agaa            5874
//
ID   BEL-9_SiCu-LTR repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   10-DEC-2019 (Rel. 26.09, Created)
DT   10-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-656
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4968-4968 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 656 BP; 188 A; 92 C; 123 G; 251 T; 2 other;
     tgttcctgct atgaataaaa tgtagcagtt cgaagtcgat tggaatttgt ttaatgtttt        60
     tcagtaattt gtagatttta atagtaagtt aaaccgtagt aattatgtag acaaatcaaa       120
     attgttaaga tttgtttgct ttcttttctg ttccaaagtt caatattatt taaagataca       180
     ggaaattgtc aacttcctgt tttctcttcc tgtttctttg tttaaagttc gaatgttaag       240
     ttaatttaaa ttagtttgtg aacttgagta tttttggata ctaaatgtta attatgttag       300
     taattttgct cgagtcactt ccggtagaaa gtagtataaa taccggaggt aaaagtgaga       360
     agtcatgatt agtcgaaaga caaccagcca tacggtaggt tcttaactga gcataccaag       420
     agttaacttg ttccgtctta tagcaagtta tctttaataa agttttccaa tcaattaatt       480
     ttggtgtcgg awwttttaaa gttatttcgt tgcattccca gtaatctccc ttgtcgttat       540
     ttgtggcagg gaattctgga agattgtctc agtcagagac tggtccttca tttagttatc       600
     gaagcatcat tttatgcaca tgacggttac ctgacggtta caatttggcg tgcata           656
//
ID   BEL-9_SpEx-I repbase;    DNA;    INV; 6082 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6082
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6891-6891 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           506..2125
FT                 /product="BEL-9_SpEx-I_1p"
FT                 /note="DUF1759."
FT                 /translation="MASKSKYTARIASVLRWLGSAVLNISRQDRVQALLSR
FT                 YDSLESKLTELYDAHQAILELGLESEVMDKINADIDQADDLADQIRQAVGT
FT                 LKMSSLGERPPKVEEGASPALISRLPKLDLPHFGGDLCQWVAYNNLYESLV
FT                 HSRRDLTPAQKLAYLLASLTGEAKGLVQHLDLVDGNYEIARDLLMRRYQNV
FT                 RRLADSHVSAILDLPKNPMPQLLRTRLLNPLLIAVNGLKGLDLPVSSWSFI
FT                 LLHIVLGKLSHELRNRFELEHGGDSTTYLPPFDDLVSFLEDECRRVENVPQ
FT                 PKSMEVRTRVQPARIERRREGRIYNSTAMQQPSSRCMYCKEPGHGTPTCFK
FT                 FGQLRWQARRNIARQRNWCYSCLGNHLASQCQIARPCAQCGGNHHLLLCGN
FT                 RNGSPPPAASAPKAVAPEDRIIGNINDQWTGRARFGLPRGCPNIPHLYRKK
FT                 TPLRDTQCQFQSSTGGGTRVPPRVCHATVDQERRCGFGVPLHYMDWPRLDR
FT                 QPQYASHASQVYVPPSGNPSHQHWTPYAAHDTSVNDINNANSEN"
FT   CDS           2129..6016
FT                 /product="BEL-9_SpEx-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and DUF5641."
FT                 /translation="LSNPHPPPAHDPCLLTVLLPTAQVSVGSPSGEKVTAR
FT                 ALLDSGAQGCIASTWLVERLRLRVEPGGNYIRGVGGVKVPGLVGQVALSFS
FT                 PLQSSRPRIIVSAIVLRNVIGRHPVVQLPSRVVALTSGLSLADPEFHVPGP
FT                 VDLLIGADVLGLLQLGSSKLLQSGGLVSVATDLGDIIMGPVLSPCPLQGED
FT                 DNLQVGLSLAESVQRFWEVEEPPSAPRQNPEHLECESFFQNNTGRLCSGRF
FT                 VTRLPFLPSRPRLGHSRMLAEKRLSSMERRMNRDPTFRQKYIEFMREYLEL
FT                 GHMSVSNFDWRSQEHYFIPHHAVFKAGKIRVVFDGSAPTSNGVSLNHCLHS
FT                 GPKLHRDICEVLTNFRRHQVVFVADIRMQFRQTLIHPDDRRYQLILWREDQ
FT                 SSPITVFELNTNTYGLKSSPFIAIRTLLELADRERLRFPRASAILSSDVYV
FT                 DDICTGANSEEEAVLLRNELQGILQAGGYELRKWLSNSQAVLAGLPQDHQQ
FT                 VPHIFQNVDNPDAVAVLGVQYQPIPDVFTFRVQDINVARLWTKRSVLSTVA
FT                 RIFDPNGWLTPVVFWAKCFLQKLWLEGLTWDASLTGDLLRSWNRFVSSLPD
FT                 IQLIKIDRAFLPPGKCKVTLHGFCDASECGYAAVVYIHTIDTTGAITVKLV
FT                 MAKSKVAPIRSRLTIPKLELSGAALLTRLLNHLMSTLGQKVEIEKVFAWTD
FT                 SQIVLSWLRASVHSLEVFVANRVSQIQQSVAALDWRHVPGEWNPADCASRG
FT                 CDSSVLLDHPLWWGPAWLSQPECSWPQAAVDLVEPLPGLRALVVLKEVSQD
FT                 LTSLLNRFSSLDKLLGVTGWIKRFVHNSRHLSARRSSSVLSPEERQEALMF
FT                 WVRFVQGKCFETVLTTLKDGRVKLKGAVGRLTPFIDEKGLLRVGGRLRQSV
FT                 LPYGTRHPLLLPKEGCPLVKLIITDRHVKNAHAGLNTLLAILHQEFWILSA
FT                 RRAIRNVIFQCIPCYRLKAAITQPQMGDLPPDRVRASRPFSGVGTDFAGPF
FT                 LIKVSSMRNARVIKAYLCVFVCLVTKAVHLEVVSALSTEAFIACLSRFVSR
FT                 RGLPSLIRSDCGTNYKGSDRYLSEVYKFLSENETPIATSLSQRGIRWQFSP
FT                 PAYPSWGGIFEAVVKVAKTHLRRVIGETVLTFEELTTVFCKIEAVLNSRPL
FT                 CPVSSDPNDLEVLTPGHFLIGGPLTALPEYPFTDIPVNRLTRFELLKQLSQ
FT                 SFWKRFNLEYLHLLQQRVRWSDKTDPPKVGDLVLVKEMNMPPLSWRRGRIL
FT                 RLFLGSDGVPRVAEVLVGDSILKRAVAGLSRLPVT"
XX
SQ   Sequence 6082 BP; 1397 A; 1291 C; 1507 G; 1887 T; 0 other;
     aaaatttggt agcagagcgt ggttttggtt attttccgct ccgtaatcgg ttttatatac        60
     tattataaat tataaaagtt aagttctcga tacctacatt acatattttt gcgtctgcgc       120
     attgtaggtt agttaaccta tatttttatg cacgcggtag tgcaagtcat gcaaccggtt       180
     cttaaataaa tcttttgttc gtggatagta ttgatgacac ataattttat ataagaagtt       240
     atttagtatc gttcggctga tccgataatt atgtcaaggt tatttattgt tctcgtataa       300
     ataacttagt tttataacta tttgaataat aatttgctta gattattttc tttttgaata       360
     gtatacggtt tacgaattca attaagttat ttacttgctg ttaattagct aacatcacgc       420
     ttgtattccg cgtcggggta gttagtggcg tatcgtatac cttatatagt tgttacttaa       480
     ttttttgtac tttaatataa taaatatggc tagtaaatct aaatacacag cccgcatagc       540
     tagtgtgttg cgatggctcg gctcggccgt tttaaacatt tcacgtcagg atcgggttca       600
     ggcattatta tcccgttatg attctttgga aagtaaatta actgagttgt atgatgcaca       660
     tcaggcgatt ctcgagctgg gtcttgagtc ggaggtgatg gataaaatta atgctgatat       720
     tgatcaggcg gatgatctgg cggaccagat ccgtcaagcc gtgggtacct tgaagatgtc       780
     ttctcttggt gagagacctc ctaaggttga ggaaggagca tctccagcat taattagtcg       840
     gttgccaaag cttgatttac ctcattttgg tggtgatttg tgtcagtggg tggcatataa       900
     taatttatat gaaagcttag tgcactcacg tagggattta actccggctc agaagttggc       960
     ctatttgttg gcctccctta ctggagaagc taagggattg gttcagcatc tggatcttgt      1020
     tgatgggaac tatgagatcg cccgggattt gcttatgcgg aggtaccaaa atgttcggag      1080
     gttagctgac agtcacgtgt ctgccatttt ggacctgccc aagaacccaa tgccccagtt      1140
     attacggact cgacttctta atccattatt gattgcggtt aatggtttga aggggttgga      1200
     tttgcctgtg tcgagctggt cgtttatatt gttgcatatt gtactcggaa agttgtctca      1260
     tgagctgcga aatagattcg aactggagca tggtggggac tccaccacat atctccctcc      1320
     gtttgatgat ctggtttcct ttttggagga tgaatgccgt cgtgtggaga atgttcctca      1380
     gccaaaatct atggaagttc gcactcgggt gcagccggca cgtatagaac gtcgtcgtga      1440
     gggccggata tataattcaa ctgccatgca gcagccgagt tctcgttgta tgtattgtaa      1500
     ggagcctggc catggtactc cgacatgttt taaatttggt caactgcgtt ggcaggctcg      1560
     gcgtaatatt gctcgtcaac gcaactggtg ttattcttgc ttgggtaatc atcttgcatc      1620
     acaatgccag atagctcggc catgtgctca atgtggtggt aatcatcatc tccttctgtg      1680
     cggcaatcga aacggatcgc ctccgccggc tgcttcggca ccgaaggccg ttgccccaga      1740
     agatcgaatt ataggtaaca ttaatgacca atggactggt cgtgcacggt ttggtctccc      1800
     tcggggctgt cctaatatac cacaccttta taggaagaag acccctcttc gtgacacaca      1860
     gtgtcagttt cagtcctcca cgggcggggg tacccgagtt ccccctcggg tttgtcatgc      1920
     aactgtggat caggaacgtc gatgtggctt tggggtgcca ctgcactata tggattggcc      1980
     tcgtttggat cgacaacctc aatatgcaag tcatgcaagt caggtatatg tgccccctag      2040
     tggaaatcca tcacaccagc attggactcc ttatgctgct catgacacct ctgtaaatga      2100
     tattaacaat gctaattcgg agaattgact ctccaatcca catcctccac cggcgcatga      2160
     tccctgtctt ttaactgtat tattgcccac tgctcaggtt agtgtaggtt ccccttcggg      2220
     tgaaaaggtg accgcacgtg cattgctgga ttcgggtgct cagggatgta tagcgtcgac      2280
     atggctggtg gagcgtttgc ggttgcgtgt ggaaccgggt ggaaattata ttcgtggcgt      2340
     aggaggagta aaggtgcctg gtttagtggg acaagtcgca ctctcctttt cccccttgca      2400
     gtcttctcgt ccgcgaatta tagtttcagc tattgtttta cgtaatgtta ttggacgtca      2460
     tccggtcgtc caactcccat caagagtcgt cgctttgact tcgggactat cccttgcaga      2520
     tcctgaattt catgttccag gtcctgtaga ccttttaatc ggtgcagacg tcttaggatt      2580
     gctgcagcta ggaagcagta agcttctgca atcaggtggt ttagtttctg ttgcgaccga      2640
     tcttggtgat attattatgg gcccagtact ttcaccttgc cctcttcaag gggaggatga      2700
     taatttgcag gtggggctct cactcgctga gagtgttcag cgattttggg aagtggaaga      2760
     gcccccttct gctcctcgtc aaaacccaga gcacttggaa tgcgaatcgt tcttccagaa      2820
     caacacgggt cgtctctgct ctggtcggtt tgtcacaaga ttaccttttt tgccgtctcg      2880
     gcctcgtctt ggtcactcca gaatgcttgc ggaaaaaagg ttgtcttcta tggaaagacg      2940
     catgaatcga gacccaacgt ttcgacagaa gtacattgag ttcatgcggg aatatttaga      3000
     actgggacat atgtcggttt ctaattttga ttggcgttct caagagcact actttattcc      3060
     ccaccacgcg gtgtttaagg ctgggaaaat tagggttgta tttgatggct ctgcgcccac      3120
     atctaatggt gtgtccctta accattgttt acattccggt ccgaaactcc atcgggatat      3180
     ttgtgaggtt ttaacaaact tccgccgaca tcaggttgtg tttgtggcgg acattaggat      3240
     gcaatttcgt cagacactta ttcatccaga tgatcgtaga tatcaactca ttttgtggcg      3300
     ggaagaccag tccagtccta ttacggtctt tgagttaaac actaatacct atggacttaa      3360
     gtcgagccct tttattgcaa ttcgcacttt gttagaattg gctgatcgag aacgtttgcg      3420
     ttttcctagg gcatctgcta ttttgtccag tgatgtttac gttgatgata tttgcacggg      3480
     tgctaatagc gaggaagagg cagtcctgct gcgtaacgag ctgcaaggta tcctgcaagc      3540
     aggtggttat gagctaagga agtggctgtc gaactcgcaa gctgttcttg cgggtttgcc      3600
     tcaagaccat cagcaggttc ctcatatttt ccaaaacgta gacaatcctg atgcagtagc      3660
     ggtgttaggc gttcaatatc agccaatacc tgatgtattc acctttcgag tgcaagatat      3720
     taacgttgcc agactatgga caaagcgctc agttctctcg actgttgcac ggatattcga      3780
     ccccaatggg tggttgactc cagtcgtatt ctgggcaaag tgcttcctac agaagctttg      3840
     gttagaagga ttgacgtggg atgcctctct tacgggagat ttgttaagat cttggaatag      3900
     gttcgtgtca tccctccctg acattcagct tataaaaatt gacagggctt tcttaccccc      3960
     tggcaagtgt aaggttaccc ttcacgggtt ttgtgatgct tcagagtgcg gatatgccgc      4020
     tgttgtgtat attcacacta tcgatacaac tggagcaata actgttaagt tagttatggc      4080
     taagagcaag gttgctccta tacgatcaag actaactatt cctaaactgg agttgtctgg      4140
     agctgctctc ctgactcggc ttcttaatca tttgatgtcg accttaggcc agaaggttga      4200
     aattgaaaag gtgtttgctt ggacagatag tcaaattgtt ctctcttggc tgagagcatc      4260
     tgtccactct ttagaagttt ttgtagccaa tcgcgtctcc caaattcagc aatcggttgc      4320
     cgcgttagat tggagacatg tccccggaga atggaatcca gctgactgtg catcacgtgg      4380
     ctgtgattct tcggtcctac tggatcatcc tttgtggtgg ggaccagcct ggctatctca      4440
     gccagaatgt agctggcctc aagctgctgt ggatttagtt gagcctcttc cgggattaag      4500
     ggctcttgtt gtattaaagg aggtttcgca ggacttaacg tccctcctga atcggtttag      4560
     ctccttagat aagttattgg gtgtaaccgg ttggatcaaa cggttcgttc ataattctag      4620
     gcacttatct gcccgacgat cttcttcagt gctgtcccct gaagaaagac aggaagcatt      4680
     aatgttttgg gttcgtttcg ttcagggtaa atgcttcgag acggtgttga caactctgaa      4740
     ggatggacga gtaaagttga aaggtgctgt cggtcgtctg acccccttca ttgacgaaaa      4800
     gggtttgtta cgggtcggag gtaggttacg gcaatccgtg ttgccgtatg gaactcgaca      4860
     tcccctccta ctgcctaagg aaggctgccc gttggtgaag ttgataatca ccgatcggca      4920
     cgtcaagaat gctcacgcag gtttgaatac cctactggct atacttcacc aggagttttg      4980
     gatattatca gctaggagag ctattcgtaa tgtcatcttt cagtgtattc cctgttatag      5040
     gttgaaggct gctattacgc aacctcaaat gggagatctg cctcctgatc gagtgagggc      5100
     ttccaggccc ttctctggtg tcggtacgga ttttgcaggt cccttcttaa taaaggtttc      5160
     ctcaatgcga aatgctaggg tgataaaagc ctacctgtgc gtatttgttt gcctcgttac      5220
     caaggctgta cacttagagg ttgtctctgc cctaagcact gaagccttta ttgcatgttt      5280
     gtctcgattt gtcagtcgtc gtgggttgcc gagtttgatt cggtccgact gcgggaccaa      5340
     ctacaaggga agtgatcggt atttatctga agtttataag tttttatccg agaatgagac      5400
     cccaatcgca acttcactct cgcagcgtgg tattagatgg cagtttagcc ctcctgccta      5460
     tccgtcttgg ggcggtattt ttgaggcggt tgtgaaggta gctaaaacac atcttcgcag      5520
     agttattggt gaaaccgttc tcacatttga ggaattgaca acagtttttt gcaaaattga      5580
     ggctgttctc aattcgagac cgctttgtcc tgtctcttcg gacccaaatg acctggaagt      5640
     tttgacacca ggtcattttt taataggtgg tcctcttact gctcttccgg aatatccctt      5700
     tactgacatt ccagtcaatc ggcttacacg ttttgaattg ctgaaacagt tatcccagag      5760
     tttttggaag agatttaact tggaatatct tcacttattg cagcagcgtg ttcgttggtc      5820
     tgataagact gatccaccaa aggttggtga ccttgtccta gttaaggaaa tgaatatgcc      5880
     cccattgtct tggagacgtg gtcgaatttt gaggctattc ctagggtcgg atggtgttcc      5940
     gcgagtagca gaggtcctgg tgggagactc cattttaaaa agagccgtgg caggtttgtc      6000
     acgacttccg gtaacatagt ttgtcaatcc tgatcctccg attttgggct cagtcagagt      6060
     acgtctgact ggggcggggg ac                                               6082
//
ID   BEL-9_SpEx-LTR repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-567
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6880-6880 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 567 BP; 143 A; 121 C; 127 G; 176 T; 0 other;
     tgttcggaat agattgctat tataaaatat taatcctaat gtgggtactt cgtaatatct        60
     tgataacaaa tatcttatgg tgtacccgca aatttagata tatttcaata acgtccgagc       120
     cgaggacttc gcggagtcgg ttggaatcgt tgattcggaa cgttcgtgtt ggtaatatcc       180
     tccgattcaa taatttggaa acgcggaccg ggattccata cttttaatat attttgttgc       240
     tgcgcccgcg cttatagtag attgttcgcg aagttggtat gcgcataatt tctggtgtga       300
     agtgccggac gctggatcac aaggtcaaag aattccttaa atatcccctt cacattccct       360
     taagtaggtc atcaatcctc ctcacggtcc tcacgggtac cctaatccct atagaccatt       420
     gactgactga ctgtgatagc atcgaggcgc atcagtagca gtttcggtaa gtggaacatt       480
     cactttatgt atgtaggtat cgcgtaggct agaacttaac ctagggtttt gtgtcgccgg       540
     gccaccgatc ccgctgtttt cgataca                                           567
//
ID   BEL-9_TrNi-I repbase;    DNA;    INV; 4082 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4082
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1034-1034 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           601..3798
FT                 /product="BEL-9_TrNi-I_1p"
FT                 /note="DUF1759, retropepsin, reverse transcriptase,
FT                 ribonuclease H (partial)."
FT                 /translation="MDSLVDIQEDVKVKINKAMINFKKCPKDLLTVSYIET
FT                 RLESLEQLWQLFYNTHVKIISEVKKSELSSSTYHKDCVYDEVEELYVQFKS
FT                 TLKEILRKNKCVSTNDSSPGLSSSCKEENNFRLPEVKIPMFSGKYQEWLTF
FT                 RDLFLGLIHKNNKLNDAQKLYYLKGYLTGEAELLLRNVQVTADNYSTSWTK
FT                 LESMYNNKRFLANGIVKTLFNQKAIIEESATDIKKLLSTTTDCLESIKNLD
FT                 IDLASTLIIHIITEKLDKVTRRAWELKVASDPKDNLPTFEELKEFLVNRFR
FT                 ALENLGTKEERVPKTTRVLHVVNDKRVSCAFCAGEHKISSCPKFIKESTES
FT                 RRNFVLKNRLCFICLLSNHSVRYCKNTLRCQVCKRRHHSLLHQQGVVGSEI
FT                 GEGGSAARAETSSGIYEGNKDACKAKESGTQVVSCLATGNSKTVLLATALV
FT                 KAESRNGTYYTARALLDQGSQGSFVTESLVQYLGLKKKPSRHTVSGVGGES
FT                 LTSKYTVDINLRSRIDPHFQIKVNVYVLKSVTALLPGTKVARIEWVDLTDN
FT                 ELADPEYHRPNKIDILLGAEVYSQIIQEGIKRNLNGNLLAQDTTFGWILSG
FT                 ACAVDPESIFHSHITVMHSSVQDDELLRKFWELEEPSGTKRMLTEEETKCE
FT                 ELFKTTTTRNKDGRYVVKLPVRDTNLVDQGVESKGIAEKRLKGLEVRLARN
FT                 DKLKVEYAKVIQEYLSLNHMVEVSDRDSIRGVYLPHHAVVREDRETTKVRV
FT                 VFDASCKYNNGRSLNDDLMVGPALQDDLRHIIMRWRVHRICIVADIVKMYR
FT                 QVLVNRQDTPLQRILWRDDPEKEIKAYELITVTFGTASAPYLAVKALQQLA
FT                 ADECGDNLDLAKIIVSDFYMDDLMSGAETEEDAFKIYTDITKILGKGGFEL
FT                 QKWKSNCQGLLNKIRDGNDEALQIKIDELTKILGLTWNARDDCFQYSLELK
FT                 PIAGPATKRKIIADITRLFDPLGWLAPSIIVAKTLIQKLWLAGLQWDEEVP
FT                 KNLLKEWVTYRENLASLVDIKVPRWLNTGKKVKQELYGFSDASKLAYAAVV
FT                 YLRVVDDMG"
XX
SQ   Sequence 4082 BP; 1348 A; 609 C; 984 G; 1141 T; 0 other;
     tggtccttcg gagtcggatt ggtcgggagt gttgtggcgg gttccagagg tggtagaatc        60
     taccatccta cgcttcgata ctgggcagcg gattgctgtc cagatcagcc ttcagtgggt       120
     accaggtgag aggtgccagg agctggaggt ggaagaccgg ttggtgcagg gaggatccag       180
     tggagcgtgg agcagcacta ctggtgatag cagcagccgg agggcgaagc gagggaggca       240
     agcaggaagg tgaacgccgt agcacagagg gcgccaccgt atcagtgtca gtgagtgtat       300
     ggtgaaaaaa ccgtgagtac tttcaacaat agtaatttgg acttgtaata gtttttaaga       360
     aaaagtggtt gggacgggga acctatgccc gatttggtat agaaattgaa ctcaaaaaga       420
     cttgtaaaat tttcgggaat ttaagtttgt gttcggatca agtgcgagaa gaatataact       480
     acttagtgga cattaagttt agcgtattag tttgtgttat ttgtgctgta gtattagatt       540
     tattgttgtg ttttttgtct tatttgtgtt tgtgtctacg tctaatattg tatttataaa       600
     atggattcgt tagtggatat ccaagaagac gtaaaagtca aaattaataa ggctatgatt       660
     aactttaaaa aatgcccaaa agatctactt actgtatcgt acattgaaac acgcttagag       720
     agtttagaac aactatggca acttttctat aatacacatg ttaaaataat aagcgaagtt       780
     aaaaaatctg aattatccag ctctacttac cataaagatt gtgtttacga tgaagtagag       840
     gaattatatg tgcaattcaa aagtactctg aaagagattc taagaaaaaa taaatgtgta       900
     tctactaatg atagtagccc gggtcttagt agtagttgta aagaagaaaa taattttcgg       960
     ttgccggagg ttaaaatacc aatgttttct ggtaaatatc aggagtggtt gacctttaga      1020
     gatttgtttt tggggttaat tcataaaaat aataaattga atgatgctca gaaattatat      1080
     tatttgaaag ggtatttaac tggggaggcg gaactcttat taaggaatgt acaggtgacc      1140
     gcagataatt atagtactag ttggacaaaa ctagagtcca tgtacaataa taaaagattt      1200
     ttggcaaacg ggatagttaa aactttattt aatcaaaagg ccataattga agagtccgca      1260
     acggatatta aaaagcttct gagtaccaca actgattgtt tagaatccat aaaaaattta      1320
     gatatagatc ttgcctcaac tttgattata catattatca ctgagaagct tgataaggta      1380
     actagaaggg catgggagtt gaaggtagca tctgatccta aggacaacct tcctactttc      1440
     gaggaactga aagaattcct cgttaaccgt tttagggctt tagagaattt aggaacgaaa      1500
     gaagagaggg tcccaaagac tacacgggta ttacacgtag ttaacgataa aagggtatct      1560
     tgtgcctttt gtgcaggtga gcacaaaata agttcatgtc caaaatttat taaggaaagt      1620
     acggaatctc ggaggaactt tgttctaaag aacagattat gttttatctg cctgcttagc      1680
     aaccactctg ttaggtattg taaaaacact ctcaggtgcc aggtgtgcaa aagacgccac      1740
     cattcattgt tacaccaaca aggtgttgta gggtcggaaa ttggtgaagg tggtagtgct      1800
     gctcgcgcgg aaacctcatc gggaatttac gagggaaata aggacgcttg taaagcgaaa      1860
     gaatcgggaa cacaggtagt ctcatgtctc gcgacgggaa acagtaaaac tgtcttatta      1920
     gcaacagctt tagtaaaggc tgagtcgagg aatgggactt attatacggc aagggcgtta      1980
     ttggatcagg gatcacaggg ttcttttgtt acggaatctc tggttcaata tctaggttta      2040
     aagaaaaagc catcaaggca cactgtgtca ggtgtagggg gtgaaagctt aacgtctaag      2100
     tatacggttg atattaattt gaggtcaaga atagacccac atttccaaat aaaggtaaat      2160
     gtttacgtct tgaagtcagt cactgccctt ctcccaggta cgaaagtagc taggatagag      2220
     tgggtagact tgaccgataa tgaattggct gaccctgaat accacagacc caataaaatt      2280
     gacattttat tgggtgctga ggtttacagt caaattatcc aggagggaat taaaagaaat      2340
     ctaaatggaa atttattagc gcaagatacc acctttgggt ggatattatc gggagcttgt      2400
     gcagtcgatc ctgagtctat ttttcattca cacattaccg tgatgcactc cagtgtccag      2460
     gatgatgaat tgttgaggaa attctgggaa ttagaggaac catctggaac aaaaaggatg      2520
     ctcacggagg aagaaaccaa atgtgaagaa ctattcaaga caacgacgac aaggaataag      2580
     gacggcagat atgtcgtaaa gttgccggta cgggatacaa acctggtcga tcaaggcgtt      2640
     gaatccaagg ggatcgctga aaaaagactg aaagggttag aagtaaggtt agcgagaaat      2700
     gataaattaa aggttgagta cgctaaggtg atacaagaat atttaagtct caatcacatg      2760
     gtagaagtat cagataggga tagtataagg ggagtttact tacctcatca cgctgtagtc      2820
     cgtgaggata gagaaacaac aaaggtgcgt gttgtatttg atgcttcctg taagtacaat      2880
     aacgggcggt cactgaacga tgatttaatg gttggcccag ctttgcaaga cgatcttcgt      2940
     catatcatta tgcgctggag agtacatcga atttgtatag tggctgatat agtgaaaatg      3000
     taccgacaag ttttagttaa taggcaagat actccattac aacgaatact ttggcgggat      3060
     gatcctgaaa aggaaataaa ggcttatgaa ttgataacgg ttaccttcgg tacagcctcg      3120
     gcaccatact tagctgtgaa ggctcttcaa cagcttgcag ctgatgaatg cggggacaat      3180
     ttagatctgg ccaaaataat agtaagcgat ttctatatgg atgatttaat gtcaggagct      3240
     gaaactgaag aagatgcatt taaaatttat acggatataa ccaaaattct aggtaaaggc      3300
     ggatttgaat tacaaaaatg gaaaagcaat tgtcaaggat tattaaataa aattagagat      3360
     ggaaatgatg aagcgttaca gattaaaata gatgaattaa caaaaatctt aggacttacc      3420
     tggaatgcgc gcgacgattg cttccaatac tccctggagc ttaagccaat agctggacct      3480
     gcaacaaaaa gaaaaattat tgcggatatt acacgattgt ttgatccact ggggtggtta      3540
     gcaccaagca taatagtagc aaaaacatta attcaaaaat tgtggttagc agggctgcag      3600
     tgggatgaag aagttccaaa gaatttatta aaagaatggg ttacttaccg tgaaaactta      3660
     gcttctttag ttgatataaa agtgccacgt tggttgaaca cgggaaagaa agtaaaacaa      3720
     gaattatacg ggttttcaga tgcttctaag ttagcatacg cggcggttgt ataccttaga      3780
     gtagttgatg atatgggtta acacgtgtgg tcacaataag gacaaaattg tccaccataa      3840
     aaagacctac gtcaagggtg tgtgtattac ctgtagccaa ttaatagtaa gatttattta      3900
     agtagtttta aggattttaa aataaggtaa taatgtaacg gtttagtgtg tagttgtatt      3960
     tagtattaag aaacaaaatt gttagtttta tttttttaag attgtactat acctgcatga      4020
     gaatgtaata gataagcgag gcagatgaag gacattcgcc ataatgtcct tggtgggcgg      4080
     aa                                                                     4082
//
ID   BEL-9_TrNi-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   13-DEC-2021 (Rel. 27.02, Created)
DT   13-DEC-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL-9_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-261
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 22(2), 1044-1044 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 261 BP; 76 A; 46 C; 53 G; 86 T; 0 other;
     tgtctacgta attataggtc aacggaatca tagcgcgatc aaagggaata taaaacgtaa        60
     aagtttacac gatacctcga tagatggcgt tggaatcgat ttagatcgcg ctatggtttc       120
     gttacacggg atattataaa tgtcggagaa ttaatttttt tgttgtgagc agcaagcact       180
     gtggtttact atattatacg cgcttaatat tagtttccaa gtgttttaat tatccaccct       240
     ctccaagtcg accttcgttc a                                                 261
//
ID   BEL1-I_AG   repbase;    DNA;    INV; 7959 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   BEL1-I_AG is an internal portion of the BEL1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL1-I_AG; BEL1-LTR_AG; BEL1_AG; Bel clade; PHD zinc finger; env;
KW   integrase; reverse transcriptase.
XX
NM   BEL1-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-7959
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 8-8 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL1_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL1-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL1-LTR_AG
CC   LTRs. The BEL1-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~20 copies.
CC   The consensus sequence encodes two proteins: a 1771-aa
CC   BEL1-I_AG-ORF1p
CC   (positions 1204-6516) and 502-aa BEL1-I_AG-ORF2p (positions
CC   6452-7957). BEL1-I_AG_ORF1p is composed of the PDH domain (aa
CC   positions
CC   13-54), reverse transcriptase (aa positions 745-900) and
CC   integrase
CC   (aa positions 1421-1569).
CC   BEL1-I_AG-ORF2p is a putative env-like protein. It is distantly
CC   similar to the env-like proteins encoded by Tom and Ted
CC   retrotransposons
CC   from Drosophila ananassae and Trichoplusia ni, respectively.
CC   Some copies of BEL1_AG are nearly identical to each other.
CC   Therefore,
CC   BEL1_AG can be still active.
XX
FH   Key           Location/Qualifiers
FT   CDS           1204..6516
FT                 /product="BEL1-I_AG-ORF1p"
FT                 /translation="MDIIFKSNPKGNCKLCKNPDEWDTQVNCIECDRWLHL
FT                 KCLKLEGPVKKYVCPKCYTIAEERKGNREALMQTERLLKEKTEAEKRTREE
FT                 NERCEKEIERLEDILRNEEIHNQSDTTHLQDDLQTLTTNVNKMANLGFAPH
FT                 KKTVLKLPDFYGNYRTWPRFKLLFEETTRTEKFSNLENLTRLQIHLKGDAL
FT                 RSVSGLMLNPSNVDAILERLGRLYGNPVSIFNALLKDLMVVKRASLENPSS
FT                 IIEFCNALNNMVENMTMLNQTEYLMDQRLLTDLVAKLSPDLKTRWLRDSLN
FT                 EEGDKIKTLKDFSKWLKPTEDVAITLLAMEGGQRDRPARLNTHYSASHQIS
FT                 NKGCLICSRPHETISCYKLKNASVNERWKMLKEKNVCTNCCKFSNHAAINC
FT                 RSRPQCTVDGCGRRHNTILHEEKFNSMGAASKAHLNFHQNSEQYLFQVLPI
FT                 TVYNENNSIETFALIDPGSSTSLMTESLRQKLNLHGPRKPLTLSWTNGCNQ
FT                 VEDTSTSVSLKLRGPNGRLLYVKDIRTVKELDLPTQSINANVLKRKFSHLK
FT                 TVNISSYKNAKPTILLGLPHAYYTQAVESKSGAPNEPVAHKTRIGWVVFGK
FT                 CRDGDAKENQHLFTIQDKKEEEEKSMRDLMKRFFSTEEFGVRETKFTPKSK
FT                 DHERALSVMNDTLKYTNNQYEIGLLWKDPNVSLPSSYAQALRRLESQERKM
FT                 KGNDEMKTWYKNQITDYVQKGYARKLTPFELLNRDPKINYIPHFMVINPNK
FT                 PTPKPRLVFDAAAKNEGISLNSTLLSGPDATTSIFGVLIRFREYPIACSGD
FT                 IKEMFHQIRIRKEDQVAQRFLFRDNPRNEPQVYVMNVMTFGATCSPACAQF
FT                 VKNENALKYKDKYPTAVEAIVKNHYVDDYLDSFRTINDAIKTINEVCLIHD
FT                 RAHFFMRNFVSNCQEVIRSIPDDRSSQQELLHISNKDMNFEKILGQYWDKT
FT                 NDVLRYKLKHTPCSIISKREMLAYLMKIYDPLGLAANYTTQAKVIIQEIWK
FT                 TELDWDSPVPERIMEQWQRWKERIKELEHIQIPRCYSVASNIEVTELHTFV
FT                 DASEKAFAAVVYLRTLTEKGIDVNIVAAKTRVAPIKPLSIPKLELQAAVLG
FT                 VRLAETVKEELRITTDRDYYWSDSKTVLGWINADPQKYKQFVAVRIGEILD
FT                 TTNASQWKWVSSESNPADEATKVVTRKSIWLNGPVFLKQREIEYRDPKLII
FT                 THEEIRPNLMIKTIEKRTFNFIKTEWCSNWLRLKRSLAINLKYIEFLKSKV
FT                 KRLAFSPIVEKENLDKAEKLLLQKAQWEIYEDDLVQLSLNGQVSKNSTIKN
FT                 LNPQVIEGLLRARGRLANICYLSDDVKQPIILPKRHHVTELIIQHYHERYM
FT                 HKKMEAVIAAIRQRFWVIDLRAVVRSVISKCQRCKNERARPIAPMMAPLPE
FT                 SRAAVFKKPFTHTGVDYFGPMTVSIGRRVEKRWGAIFTCMTTRAIHLEIAK
FT                 DLSTNSFIMCLKNVQHRRGKICHIYSDNGTNFVGANRQITELVERCATNGI
FT                 KWHFNPPAAPHFGGVWERMVREVKSLLPNNDNMPEEVLRSAFIEIEFILNN
FT                 RPLTHIPLETEDDEPLTPFHFLIGCSGEAEPTPAGISAAEASRNNWKKAQV
FT                 ITQNYWERWLKEYLPTLAKREKWIERSDPIQPDDIVVFPDEQRVGRWLKGR
FT                 VVEVYPAKDGQVRSAKIKVENGEYKRPVINLSVLEVKGKKIADVPSWGVKR
FT                 PVNIAYVKKLAEQLKTPPAKRRKHLVKPYNGPVSMHYKPVSRMETNRQSFS
FT                 "
FT   CDS           6452..7957
FT                 /product="BEL1-I_AG-ORF2p"
FT                 /translation="MARYLCIISLLAAWKLTDNLSVKPVEEAGIFFDHEGT
FT                 LLLKRGVWETTFHTKIHPENDTETLLTMEKEVTTVFKALSDMDTNLLNLKL
FT                 TLQQNIRHALQLSQTAVKRRTKRSSGIFGFLKGILFGEDDIDEQLALFRAS
FT                 EDQKLKHISEDMTHKIKQGDRLRNKLNMKIDHMNEGIKSLNKSFNENKKNV
FT                 LIKHVTETIMLAEDIVQYITTRYLELEIQPLSIFDSTKISEKIQSRLPDGY
FT                 TILDHPRISSKELFRGEIIVHIENVIVSQERFEIFHITVIPNLKNFTTLDL
FT                 DENVIAINDIHYIYPTDITRYNSTHHVSSDVAVRRDLDCISSSFRHIKTEC
FT                 LCGIKPIKNSITKFVKLSQPNKILYYSSHPNEIYLKCNKTLTHPAYQAGVI
FT                 TLSQDCKIQTKNIEIQPTMKIEAVETKMYFKPLAKILNLSAEQKEETNMDQ
FT                 LYLIIITSTIACVATLILGITIAFIIKQVRAKMYTLRPPPFKPSPNSNPST
FT                 RNYGGQ"
XX
SQ   Sequence 7959 BP; 2873 A; 1648 C; 1673 G; 1764 T; 1 other;
     tggtggctcc agagaggact agtagagacc tcgcaacgta caagtcggag gttaacttcc        60
     gatcttgaaa cccagagtcg gcaggaacat acaagtcgga ggttagcttc cgatcttgac       120
     gaacgtattc ctgaccgata gagaaaaaca accagcgctc caacggagga aggttcgtaa       180
     aagcggaaaa catcgcgaat gtataatagt atccaaaaac gtaaagtgca acaaaccaaa       240
     cgagtgcaaa aaacgcctga aacagtgctt aagaagtcca aggtacagag acagaattca       300
     gtaaggcgcc gtacgatcac cgatatattg tgattgaata aagacaccgg tggcaaaaaa       360
     aaaaaacgac gttcgctata tcgtttcggt cgtaccacag gtttgtaaac aaaacaaaaa       420
     gggtgtgtgt gtgcagtgaa aaaaaaaaaa aaaaaaaaaa aacgacgttc gctatatcgt       480
     ttcggtcgta ccacaggttt gtaaacaaaa caaaaagggt gtgtgtgtgc agtgaaacgc       540
     aacctcagaa agggcgttta aaacggacga cctgagaaca tctgatcgaa aatcattacg       600
     tagcgtacta gtaacaaagt gcagtgtaaa caattacgcg tgtggcacac attcgcagtg       660
     agaacgtaat aaaacccaca agacgctaac gaccgcggtt tacggacgtt cccgtaaagc       720
     accggcagtg tactccaatt acaacaacac aagtaaatgt gcggatcaag aaaagatcaa       780
     cagttgggga gtgtaacaat acgggacgtg catacaaaaa agaaatcttc gagctaaacc       840
     gtatccggct ttagcatttc cgggaaacca caaacataaa ggtgttgata agagtgcgaa       900
     ctagtggagt agtacgtgtc cagcttattg acgtgtgttg atacggtgat cggtagccaa       960
     tggtcatcgc cccggaagac ccgattatcc aacgaaaaag cgtggcggca atactaccca      1020
     agcagcggat ctgaaggcga ccagaagaca ggggtactga cgacaccgcg ggggatcacc      1080
     tgaagacgac ctcgaggagg acaagcaggg gcgttgtaag agcagcaacg gcacgacgac      1140
     acccatccag atcggcagcg acagcccagt tactttatcc accggttacg caaagtgagt      1200
     agtatggata tcatatttaa aagcaacccg aaaggcaatt gcaagctatg caagaacccc      1260
     gatgagtggg acacacaagt taattgtatt gagtgtgaca gatggttaca tctcaaatgt      1320
     ctgaagctag aaggtcccgt taaaaaatat gtgtgtccaa aatgctacac aatagctgag      1380
     gaacgcaagg gaaataggga ggccttaatg caaacagaga ggctactaaa agaaaaaact      1440
     gaagcggaaa aaagaactag agaagaaaac gaaaggtgtg agaaggaaat cgaaagacta      1500
     gaagacatat taagaaatga agaaatacat aaccaatccg acacaactca cctacaagac      1560
     gacctacaga cacttacaac aaacgtaaat aaaatggcaa acttgggttt tgctccacac      1620
     aagaagacag ttttaaaact tccggatttc tatggcaatt atagaacatg gcctcgtttt      1680
     aaactactgt tcgaagaaac cactcgaaca gaaaaatttt cgaatttgga aaaccttaca      1740
     cggctccaaa ttcaccttaa gggagatgca ttgcgatccg ttagcgggtt gatgttgaac      1800
     ccaagtaacg tggatgcaat cttggaaaga ttggggaggt tatatggcaa cccagttagc      1860
     atttttaacg ccttactaaa agaccttatg gtggttaaac gggcatcttt ggaaaatcca      1920
     tcttcgatta ttgagttctg taacgcactg aataacatgg tggaaaatat gaccatgttg      1980
     aaccaaacgg agtacttgat ggaccaaagg ctccttacag atctggtcgc aaaactctct      2040
     ccggacctta aaaccaggtg gctcagagat tcacttaacg aggaaggtga caaaatcaaa      2100
     accttgaaag atttcagcaa atggttgaaa ccaacagaag acgtggcgat cacacttctt      2160
     gctatggaag gtggtcaaag agacagaccg gcgaggctga atactcacta ttcagccagc      2220
     catcaaattt caaataaagg ctgtctaatt tgcagccgtc ctcatgaaac catatcttgt      2280
     tacaagctaa agaatgcctc agtaaacgaa agatggaaaa tgctgaagga gaaaaacgtt      2340
     tgcactaact gctgcaaatt ctctaaccat gcggccatta actgtcgctc aaggccgcag      2400
     tgtacagtgg atggttgtgg acgacgacac aacaccatat tgcatgaaga aaaattyaac      2460
     tcaatgggcg cggcgtcaaa agcacattta aattttcatc aaaactcgga acaataccta      2520
     tttcaagttc tgccaataac tgtctataac gaaaacaact ccatcgaaac atttgcattg      2580
     atagacccag gatcctcaac gagcctcatg acagaaagcc taagacagaa actaaatctg      2640
     catggcccaa ggaagccgtt aacactctcg tggacaaatg gatgcaacca ggtagaggat      2700
     acaagcacgt cggtatctct gaaactcaga ggtccaaacg gcaggctgct ttatgtcaag      2760
     gacattagga cagtaaaaga actggaccta cccactcaaa gcatcaatgc aaacgtgttg      2820
     aagagaaaat tttcccactt aaagacggta aatatttcaa gctacaaaaa tgctaaaccc      2880
     accattctgt taggacttcc acatgcttat tacacgcaag ctgtggagtc caaatcagga      2940
     gcgcccaatg aaccagtggc acacaaaaca cgcattggtt gggtcgtatt tggaaagtgc      3000
     agagatggtg atgcaaaaga aaatcaacat cttttcacaa tacaggataa gaaagaggag      3060
     gaagaaaagt caatgaggga cctgatgaaa aggttttttt caacagaaga atttggcgta      3120
     agggaaacca aattcacccc aaaatcaaag gaccatgaaa gagccctaag tgtaatgaat      3180
     gacacactga aatatacaaa taatcagtat gagattggcc tactttggaa agatcccaat      3240
     gtatccttac caagcagcta cgcacaggcg ctaagaaggc tcgaaagtca agaacggaaa      3300
     atgaaaggta atgacgagat gaaaacctgg tataaaaatc aaattactga ttatgttcag      3360
     aaaggttacg ctcgtaaact aacaccattt gaattgctga atagagatcc aaagatcaat      3420
     tacattcccc attttatggt catcaatcca aataagccaa ctccaaaacc aagactggtt      3480
     ttcgatgcag ctgcaaagaa cgaagggatt tcacttaact ctactctctt gtccggacca      3540
     gacgccacta cgtcaatttt tggagtatta atccgctttc gcgaataccc tatcgcctgt      3600
     tcaggggaca tcaaggagat gttccatcag atacggatcc gcaaagaaga tcaagtggct      3660
     caacgatttt tattcaggga taatccacgc aacgaacccc aagtatacgt tatgaacgtc      3720
     atgaccttcg gtgccacatg ctctcctgct tgtgcccagt tcgttaaaaa tgaaaacgcc      3780
     ttaaaatata aagacaaata ccccactgca gtggaagcaa tagtaaaaaa ccactatgtt      3840
     gatgattatc ttgatagttt tcggactatc aatgatgcaa tcaagactat taacgaggtt      3900
     tgcctcatac atgatagagc gcatttcttt atgagaaatt tcgtttctaa ctgtcaggag      3960
     gtaataagaa gcatcccaga tgatagatcc tcacaacaag agctgctgca catctctaat      4020
     aaagatatga attttgagaa aattttgggg caatactggg acaaaacaaa cgatgtgtta      4080
     aggtataagc ttaagcatac cccgtgttcc ataatttcaa aaagagaaat gctagcctac      4140
     ttgatgaaaa tatatgatcc attggggcta gcggcaaact atactacgca agcgaaggtc      4200
     atcatccaag aaatttggaa aacagaactg gattgggata gcccagtacc agaacgcata      4260
     atggaacaat ggcaaagatg gaaggaaaga ataaaggaac tagaacacat acaaatacct      4320
     agatgctact cggtggctag caatatcgaa gtaactgagt tacacacttt cgttgacgct      4380
     tcggagaaag cgttcgcagc agtagtgtac ttaagaacat taacagaaaa ggggattgac      4440
     gtaaacatag tggcggcaaa aacgagagtg gcaccaataa aaccactctc aattcctaag      4500
     ctggaacttc aagcagcagt actcggagtc agactcgccg agactgttaa agaggaatta      4560
     agaattacca ctgataggga ctattattgg tcagattcca aaaccgtcct aggatggatc      4620
     aatgccgatc cacaaaagta caaacaattt gtggcggtaa gaattggaga gattttagat      4680
     actaccaatg ctagtcaatg gaagtgggtc tcctccgaaa gtaatcctgc agacgaagca      4740
     accaaggtag ttacaagaaa atctatatgg ctgaatggcc cagtatttct taaacaaagg      4800
     gaaattgaat atagggaccc caagctaatc attactcatg aagaaatccg tccaaatctt      4860
     atgattaaaa ccatagagaa gagaacattc aactttataa aaaccgaatg gtgttcaaat      4920
     tggctaagac tgaagagatc actggcaatc aatttaaaat atatagaatt tttgaaaagc      4980
     aaggtcaagc gattagcatt ttccccgata gtagaaaagg aaaacctgga taaagcagaa      5040
     aaactcctat tgcaaaaggc acaatgggag atatacgaag atgatttagt tcagctttca      5100
     ctcaatggac aagtctctaa aaacagcaca ataaagaatc tcaatccaca agtaatagaa      5160
     ggactactac gagcaagggg acgattagca aatatatgct acctctccga tgacgtgaaa      5220
     caacccataa tattacctaa gaggcatcac gtgacagaat tgatcataca gcattatcat      5280
     gaacgctata tgcataaaaa aatggaagca gttattgcgg caatccggca aaggttttgg      5340
     gtaatcgacc ttagggccgt ggtaagaagc gtgatcagca aatgccagcg ttgcaaaaat      5400
     gaacgcgcac gtcccattgc cccgatgatg gccccccttc cagaaagccg agccgctgtg      5460
     ttcaaaaaac ccttcaccca tacaggtgta gattactttg gacccatgac agtgtcaatc      5520
     ggaagaaggg tagaaaaaag atggggagcg atattcacgt gtatgacaac gcgcgctata      5580
     catttagaaa tcgctaaaga cttaagtaca aattccttca taatgtgcct aaaaaatgtg      5640
     cagcataggc gtggaaagat ttgtcacata tacagtgaca atggtacaaa cttcgttggg      5700
     gcaaacaggc aaataacgga actcgtcgaa agatgtgcaa ccaacggtat caaatggcac      5760
     ttcaatcccc cggccgcgcc tcactttgga ggtgtatggg agagaatggt ccgagaggtc      5820
     aagagcttgc tgccaaataa tgataatatg ccagaagaag tattaagatc ggcctttatc      5880
     gagatcgaat ttattctcaa taatagacct cttactcaca tccccctcga aactgaagac      5940
     gacgaacctc tcacaccgtt tcacttcttg atagggtgtt ccggagaggc cgaacctacg      6000
     ccagccggga tttcagcagc tgaagctagc agaaacaact ggaagaaggc acaagttatc      6060
     acccaaaact attgggaacg ttggttgaag gagtacctcc caacattagc caaacgagaa      6120
     aagtggatag aacgctcaga cccaatacaa cctgatgaca tagtcgtctt cccagacgaa      6180
     caacgcgtgg gtaggtggtt aaagggccgg gtagtagaag tttatcccgc taaagacggg      6240
     caagttagat ccgcaaagat taaagttgaa aacggcgaat acaaacgccc tgttatcaac      6300
     ttatcagtac tagaagtaaa gggcaagaaa attgcagacg taccttcgtg gggagttaaa      6360
     agaccggtca acatcgccta cgtcaagaaa ttagctgaac aattaaaaac tcctcctgca      6420
     aaaaggagga agcatctcgt aaaaccttat aatggcccgg tatctatgca ttataagcct      6480
     gttagccgca tggaaactaa cagacaatct ttcagttaaa ccagttgaag aagctggtat      6540
     attcttcgac cacgaaggaa cgcttctctt gaaaaggggt gtgtgggaaa caaccttcca      6600
     cacgaaaata caccccgaaa atgacacaga gactttactg acaatggaga aagaggtgac      6660
     cacagtattc aaggcactga gtgacatgga cactaatctt ctaaatttga aattgacatt      6720
     acaacaaaac attcgacacg cacttcaact ctcacagact gcagtaaaaa gacgaaccaa      6780
     acgatctagc ggcatatttg gatttttgaa aggtattcta tttggagaag acgatattga      6840
     tgaacagtta gccctcttta gagcttctga agaccagaaa ttgaaacata tatcggaaga      6900
     catgactcat aaaatcaagc agggtgacag acttagaaac aaactaaata tgaaaataga      6960
     ccacatgaac gaaggtatta agagtcttaa taaaagcttc aatgaaaaca aaaaaaacgt      7020
     acttataaag catgtcacag aaacaatcat gctagctgaa gacatagtac aatacattac      7080
     gacaaggtat ctagagttag aaatccagcc ccttagcata ttcgactcga cgaaaatttc      7140
     cgagaagata caatcaaggt tacccgatgg gtatacaatt ctagaccacc cccgaatttc      7200
     tagcaaagag ttatttaggg gagaaataat agtacatatt gaaaacgtca tcgtttcgca      7260
     agagagattc gaaatattcc atatcactgt aataccaaac ctaaaaaact ttacaactct      7320
     ggacttagat gaaaatgtaa tagctataaa cgatatacac tatatatacc ctacagatat      7380
     tacgcgatac aatagcactc atcacgtgtc ctccgatgta gccgttagaa gagatttgga      7440
     ttgtatatcc tcatctttca gacatataaa aacagaatgc ttgtgtggta taaaaccaat      7500
     taaaaactca ataaccaaat ttgtaaagct ctcccagccg aacaaaatcc tatactactc      7560
     ttctcatcct aacgaaatat acctcaaatg taacaaaaca ctgacacatc ccgcgtatca      7620
     agctggggta ataacactta gccaagactg taaaatacag accaagaaca tagaaatcca      7680
     gccaaccatg aaaattgaag ctgtagaaac aaaaatgtat ttcaagccgc tggccaaaat      7740
     actgaattta agcgcagagc aaaaagaaga aacaaatatg gatcagctct acctcataat      7800
     aattacaagt acaatagcct gcgtcgccac tttaatatta ggaataacca tagcatttat      7860
     tatcaaacaa gtacgagcta aaatgtacac tttacgcccc ccgccgttta aaccgtcacc      7920
     aaatagtaac ccctctacga ggaattacgg gggtcagga                             7959
//
ID   BEL1-I_AP   repbase;    DNA;    INV; 6061 BP.
XX
AC   Contig29878;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1AP; BEL1-I_AP;
KW   BEL1-LTR_AP.
XX
NM   BEL1-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6061
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 429-429 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   Genome; Contig29878; Positions    1577    7637.
XX
CC   Positions [4887-5480] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..1818
FT                 /product="BEL1-I_AP_1p"
FT                 /translation="MEGLNTLTARRGQIRAIVTRFQSFIRSPECDLKQIPL
FT                 RQVKIEEAWQNFELVQTAIEELEINNDTNTDHSQYRIDFENLYFETVAEAE
FT                 QKINSTRSNQIDTTVQSSDRGESINSTSSIIKLAALNIPVFNGSYNDWVSF
FT                 KDIFTALIHTNSNLTPIQKFFYLRSSLTSDAANCIKNFETTAINYEHAWKT
FT                 LTTRYQNEKLLIQCHVKDVCELNAVKANSSDSLRLFSDTLRSHISALEALK
FT                 QRPSEWGPLLIHIICTKLDANSLTEWEVKSPKTEIAKVEDLMIFLDERSQI
FT                 LQAVESSKNLMNTTSEINNSTCKKNSYNKSRTASTVLTTTSDVTCFICNLK
FT                 HTIYKCPTFLALSINDRIKKVNEIKLCKYYACVNMILKKNVCHGIVLNVAR
FT                 HTILCYIFLKIKLTMRKKRK"
FT   CDS           2196..5840
FT                 /product="BEL1-I_AP_2p"
FT                 /translation="MSNIGHIPQNVSLADPLFWSPQKVDLLIGVSHFYDLI
FT                 NERQIKPAPDGPVFQETRLGWVVSGPTSTAPKYNRNTEPITNSSCHLSLHN
FT                 DATIENMLPRFWCVEEFERKDAYTIEEKMCKNYFDKTVTRGVDGRFIVHLP
FT                 FRENVIDLGSSYDIAKRRLLNLERRFTNNPKLKNEYTNFINEYIQLGHMEQ
FT                 IHDDQAVSDNKKACYLPHHAVFKETSTSTRLQVVFDASCKTSNGVSLNDIL
FT                 LKGPVLQDDLIYILARFRTHNFVLSADITKMYRQFWVADEHRKFQRILWRT
FT                 EPHEAIKTFQLKTITYGTVPASFLATGCLHKLADTQNIDDSISTVIKRDFY
FT                 MDDFLGGTSSFESAIKLRDGLIKTMQSAGLELRKWASNNDNLIKGISKNQD
FT                 NINTTVSISDDNSITKVLGLFWNSATDTLQFKVQQNNHTSNDQFTKRKILS
FT                 EIACLFDPLGLVGPAIIQAKIMLQQLWRLKIQWDEPLPNDVQKQWNAYRTS
FT                 LCVLNGLIIPRQITCESDIVNLQIHGFADASINAYGCCLYLRCTIASGRHT
FT                 SKLICAKSKVAPLKCISLPRLELCAALLLSRLASRIIPKLNLKISKSYFWS
FT                 DSSIVLAWITSPSNKWKTFVAHRVGEIQERTSISDWSHVDTKENPADIISR
FT                 GCCPSKLESMSLWWFGPVWLIKNELKYPILNKIVNPTELEIPEVREVTMSN
FT                 VCTNEQNDMLSLINNYSSINKLIHVIAYCLRFHYNTLLYKRLPSRPKLTGS
FT                 LSMEEIKHARIIIIKGIQKKSFYREIQDLNKLKNVNASSKLFRLCPFIDDD
FT                 GLIRVGGRLKNAASIDVYQRHPIVLPAYNHFTSLLFKYEHEQCMHGGPQAT
FT                 LSSIRLQYWPLNGRNIARSTVHKCIKCFRYKPVVAQPIMGQLPADRVEPAR
FT                 AFLKCGVDFAGPFLIKSSLRRNASVTKGYVCIFVCFTTKATHMELVSDLST
FT                 PAFIGALNRFFDRRGKSSVIYSDNGTNFVGANHKLRVWYDLFQAEQHKKSI
FT                 DDFLIQKGVQWKFIPPRSPHFGGLWEASVKSMKNLIQKTLGDARLTYEEFI
FT                 TVLTRAEACLNSRPLTPISTDPNDLSTLTPGHFLIGDSLLAIPEPDISDVK
FT                 INRLTRWRRLTHYSQIIWKKWSREYLNQLQERKRWAGEKGPRIDIGTVVLV
FT                 RDDNISPLGWKLGLVTNIQRGTDNVIRSAEVRVGKGCFTRSVRNLCPLPFD
FT                 ENIPK"
XX
SQ   Sequence 6061 BP; 2063 A; 1101 C; 1140 G; 1757 T; 0 other;
     cttaaatcga agctttaaat aaattgctag tgtatcacgg caacatttgg tccattcgtc        60
     cggatttgaa tgagcaacgg agcacgtgat cgatcaacga aaaatcattc gaaaagtgcg       120
     ttattaaagt aaaagtgcca ttccatcgat cgacgccatc gcttatgaca cagaatttac       180
     ctactactac caaaatcgtg aaagtgctag ctgttgctgt acccaaagtc tacgcgtaag       240
     gttagcaaac cagcccacca accaccatcg aaggattcaa gttgttaagg taagagagtc       300
     actttttata tttttccttt tttcccgtat tatttaaaag ttttcccgtc tcgttactta       360
     aataaaatgg taattcccag tcaggctagt gagtcgagta cagtcgcgat atcaaagtaa       420
     taaatattac gatatctttg tcaaaacgtc aacccatgtt cggataacat cgtattagtc       480
     aataggtaca atataataat ataaccttag ttatctacac gggaatatat cgaatagcac       540
     agtataaata tttttatcgt cgtcgtataa agtaaaatgg aaggtcttaa taccttaaca       600
     gcacgacgcg gtcaaataag ggcaatagta acacgatttc aaagttttat aaggtcaccc       660
     gaatgtgatc taaaacaaat acctctgcga caggtcaaaa tagaagaagc ttggcaaaat       720
     ttcgagttag tccaaacagc gattgaagaa ttagagataa acaacgatac aaatacagat       780
     cattcacagt ataggattga tttcgaaaat ttatattttg agacagttgc tgaggctgaa       840
     caaaaaatta attcaactag gtcaaaccag attgacacca cggtccaaag ttccgatcgt       900
     ggagagagca ttaattcgac atcatcgatt ataaaattgg cagcgttaaa tataccggtg       960
     tttaatggta gttataatga ttgggtatca tttaaagaca tttttacggc attgattcat      1020
     acaaatagta atttaacacc aattcaaaaa tttttctatt tacggtcttc tctaaccagc      1080
     gacgcggcaa attgtataaa aaattttgaa acaacggcaa taaattacga gcacgcttgg      1140
     aagacgttga ccacgcgtta ccaaaatgaa aaattattaa ttcaatgtca tgtaaaggat      1200
     gtatgtgaat taaacgcagt taaagcaaat tcgtcggata gtttacgcct gttctcagac      1260
     acactacgta gtcatatttc ggccctcgaa gcattaaagc aacgaccaag cgaatggggc      1320
     ccattactca tacacataat atgcacaaaa ttagacgcaa actcgctaac tgaatgggag      1380
     gtaaaatcac caaaaaccga gattgctaag gtcgaagatt taatgatatt tttagacgaa      1440
     cgttcgcaaa tcttacaagc cgtagaatca tctaaaaatc ttatgaatac cacatcggaa      1500
     attaataaca gtacatgtaa aaagaatagt tataataaat cacgtacagc ttctacagtg      1560
     ctcactacca cctcagatgt aacctgcttc atatgcaact taaaacacac catatacaaa      1620
     tgtcccacgt ttttagcgtt atcaataaac gatcgcatta agaaagtaaa tgaaatcaaa      1680
     ttatgtaaat attatgcctg cgtaaacatg attttaaaaa aaaatgtttg tcacggaatt      1740
     gttttaaatg tagcaagaca cacaatactt tgttacatat tcctcaaaat aaaattaaca      1800
     atgaggaaaa aacggaaata gaagagaaaa caaaccgttc atcgatccaa actgacgcta      1860
     acgcgtcaat aagtgcgcat gtgcatggca ccaactatga acagatactt ttatcaaccg      1920
     cgattgttcg agcatttgga gaaaatcaaa aatcatcatt atgtcgcgca ttattagact      1980
     caggttcgca aagcaatttt attacagagg aattggttca atgtttaaaa ttacgaagga      2040
     cgaaaactta tcaccaaatt ggtggtatcg gctcaacgac gcaacacgca tactcatacg      2100
     taatcgcaca ttttaaatcg agatttaacg actatagctt cacattaaaa ttgttggtag      2160
     tacctaagat tacgagcgag ataccgtcaa aacagatgag taatataggt catataccgc      2220
     agaatgtaag cttggccgat ccgttatttt ggtcgccaca aaaggttgat ttattaatag      2280
     gtgtgtcaca tttttatgat ttaataaacg aacgtcaaat caaacccgca cccgacggcc      2340
     ctgtttttca agagacgaga cttgggtggg tagtgtcagg acctacgtcg acggcaccaa      2400
     agtataatcg caatactgaa ccgataacta acagctcgtg tcacttatca ttacataacg      2460
     acgcgacaat agaaaatatg ttacctcggt tttggtgcgt ggaagaattt gaaagaaagg      2520
     atgcatatac aattgaagaa aaaatgtgca aaaattattt cgacaagacg gtgacaaggg      2580
     gcgtagatgg ccgatttatc gtacatctac cttttcgtga gaacgtaata gatttaggta      2640
     gttcctacga catagctaag cgccgtctct taaatcttga acgtcgtttt acgaataacc      2700
     cgaagttaaa aaacgaatat actaatttta taaatgaata tatacagcta ggtcatatgg      2760
     agcaaataca cgacgaccaa gctgttagcg ataataagaa agcatgttat ttaccgcatc      2820
     acgcggtctt caaagagaca agtacgtcaa cacgtcttca agtagtgttc gacgcatcat      2880
     gcaagactag taacggtgtt agcttaaatg atatactatt gaaggggccc gtcttgcagg      2940
     acgatttgat atatatactt gctcgctttc gaacacacaa tttcgtatta tccgcggata      3000
     ttacaaaaat gtataggcaa ttttgggtag ccgatgaaca tagaaaattt caacgtatat      3060
     tatggcgcac agagccacat gaagcaataa aaacttttca acttaagaca atcacttacg      3120
     gcaccgtacc cgcatctttt ttagccaccg gatgtctaca taaattggcc gacacacaaa      3180
     atatcgatga ctccatatca accgtcataa aacgtgattt ttatatggat gattttttag      3240
     gcggcactag ttcgtttgaa tcagctatta aactacggga cggcttgatt aaaacaatgc      3300
     aatcagccgg tttagaatta cgaaagtggg cctcaaataa tgataattta attaaaggta      3360
     tatcgaaaaa tcaagataat atcaatacga cggtttccat tagcgatgac aattcgataa      3420
     cgaaggttct cgggttattt tggaactcag ccacggacac tttacaattt aaagtacagc      3480
     aaaataatca tacatccaac gatcaattta caaaacgcaa aatattatcg gagattgcgt      3540
     gtttatttga tccgttagga ttggtaggtc ctgctattat acaggccaaa attatgttac      3600
     agcagttgtg gcgactcaaa atacaatggg acgaaccact tccgaacgat gttcaaaaac      3660
     aatggaatgc ttatagaact tcgttgtgcg tattaaatgg tctaattata cctcgacaaa      3720
     ttacgtgcga aagcgatatc gtaaatctac aaatccacgg atttgccgat gcgagtataa      3780
     atgcatatgg ctgttgttta tatttacgat gcaccattgc cagtggtagg cacacttcga      3840
     aattaatatg tgccaagtct aaggtcgcgc cattaaaatg tatatcttta cctagattgg      3900
     aattatgtgc ggcactttta ttgtcaagat tggcaagtag aataattcca aaactaaatc      3960
     tgaaaattag taaaagttat ttttggtccg attcgagtat agttttagca tggattacgt      4020
     ctccctcaaa caagtggaaa acttttgtgg cccaccgagt cggagaaatc caagaaagaa      4080
     catctatatc agactggtca catgtcgata ccaaagaaaa tccagcggat attatttcac      4140
     gtggttgttg tccgtcaaaa ttagaatcaa tgtcattatg gtggtttggc ccggtctggt      4200
     taataaaaaa cgaattaaaa tacccgatat taaataaaat tgtaaatcca acggagttag      4260
     aaatacccga agtccgagag gtgacgatgt ctaatgtatg tacaaacgag caaaacgaca      4320
     tgttgtcatt aataaacaat tactcgtcta taaacaaatt aattcacgta atagcttatt      4380
     gtttacgttt tcattataac acattattat ataagagatt accgtcaagg ccaaaattaa      4440
     cgggatcact tagtatggag gaaattaaac acgcacgtat tatcataata aagggtattc      4500
     aaaaaaaatc attctatcgc gaaatacaag atttgaataa attgaaaaat gtaaatgcat      4560
     ctagcaaatt gttccgtttg tgtccgttta tagacgacga cggtctgata agagtaggag      4620
     gtcgtttgaa aaatgccgcg tcgatagacg tttatcaacg acatccaatc gtcctaccag      4680
     catataatca ttttactagt ttattgttta aatacgaaca cgagcagtgt atgcacggcg      4740
     gaccccaggc aaccttatct tcaataagat tacaatattg gcctttaaat gggcgaaata      4800
     tagctcgaag tacagtacat aaatgcatta aatgttttcg ttataaaccg gttgttgcgc      4860
     agccaattat gggtcaatta cccgcagacc gcgtagaacc ggcacgcgct tttttaaaat      4920
     gtggagtcga cttcgctgga ccgtttttaa ttaaatcaag tttacgtcgt aacgcgtctg      4980
     taactaaagg ctatgtatgt atttttgtat gttttacaac caaggcgacg catatggagt      5040
     tggtcagtga tttgtctaca ccagcgttta tcggtgcttt aaatcgattt ttcgacagaa      5100
     gaggcaagag tagcgtaatt tattccgata atggtaccaa cttcgtcggt gctaatcata      5160
     aattgagagt ttggtatgat ttatttcaag cagaacaaca caagaaaagt attgatgatt      5220
     ttttaataca aaagggcgtg caatggaaat ttatacctcc acgttctccg catttcggcg      5280
     gactatggga agcctccgtc aagtcgatga aaaatttaat acaaaagaca ctaggtgacg      5340
     ctcgactaac gtacgaagag tttattactg tactcactcg cgctgaagct tgtttgaatt      5400
     cccgtcccct tactcctatc tccactgatc caaatgatct gtcaacttta acaccaggtc      5460
     atttcctaat aggtgactct ctattagcca tccccgaacc tgatatatcg gacgtcaaaa      5520
     taaatagatt gactagatgg cgaaggttga ctcattattc ccaaataatt tggaaaaaat      5580
     ggagtcgtga atatttgaac caactgcagg agaggaaaag gtgggcaggt gagaaaggac      5640
     ctaggataga catcggtacc gtggtgttag tgcgagacga taatatttct cccttgggtt      5700
     ggaagttggg ccttgtaaca aatattcagc gaggtactga caacgtcatc cgttcagctg      5760
     aggtcagagt gggaaaaggt tgctttacac ggtcagtgcg gaacttatgc cctctacctt      5820
     ttgatgaaaa tattcctaaa tagtcatatt attatataaa ttaccattta tttatttact      5880
     ttgtattctg atattttttg tattatgacg atattctata gtatttaatg catattattt      5940
     aattgcatag tataattatt aataatttat aatttttgat tttttttatg gttttgtaat      6000
     ttagaatacc atttataata ttttatgttt tgttgaaaat gtttcaaggc gggcggtatg      6060
     t                                                                      6061
//
ID   BEL1-I_Dmoj repbase;    DNA;    INV; 5652 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   24-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL7_Dmoj;
KW   BEL1-LTR_Dmoj; BEL1-I_Dmoj.
XX
NM   BEL1-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5652
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1004-1004 (2009).
XX
RN   [3]
RP   1-5652
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JAN-2022).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           543..5621
FT                 /product="BEL1-I_Dmoj_1p"
FT                 /translation="MSLESLKAQRANTRRNISRIRNVVDPQLREGKSAPVQ
FT                 AELKCRLEILEAYFKQAMVLQTQIEKECSTDTGRTELEELYVEIKVCITEQ
FT                 LTEDIHESTFAAVSGPTFLSSAKLPRLALPTFDGNYADYKNFSALFNQMVD
FT                 QQNSLSTIEKFNQLISCLKGPALETVKAFQITPENYRKALERLNQRYDNPT
FT                 LVFLDNISSLFMLKSVSKSNSQEIRSLIDNSTALYNSLKSLGNEAQIAQAM
FT                 LIAIVMDKMDMETKRKWNESLDYSKLPTWDLCVQVVERHCQYLESCGKSES
FT                 SQARTATASKPRSQTTTRHGLSFNCSTHSCPLCLSSEHRVSRCSRLQEMSV
FT                 AERYEAAKRHGLCLNCLGKGHQASKCPSTQRCRCCSRLHHSLLHREAAVSR
FT                 STTMLPSGSNSNDVVTHTHTNRTDQVILATAIVEVMDASGNYRIGRALLDS
FT                 CSQVNFISEQFAQALRLPKVKRHMRICSVGESHTYIKFGTSATIKSRLEDF
FT                 KMPIDFCVTSHIAYQPESDIDTSSWNIPKNTPLADEKFHKTRHIDLLIGAE
FT                 TFFEILAVGQIKLGPNLPMLQKTLLGWIVSGRYNGGQQQTHCYSLSQEESI
FT                 NNNLERLWRIEDLSKPIDKFTPEQLQCEQMFTRSVRQQADGRIIVRLPFKD
FT                 DPRHLGSSYESAKLRFESLERRLNRNPELKAAYIAFLREYEDLNHMSLVHS
FT                 PRLDEPHNYIPHHCVFKPNSTSTKLRVVFDASNRTSSQQSLNDLLMVGPTI
FT                 QTDLYTLLLRFRTYKYALTADVVKMFRQVLVDYRDRKFQSILWRDSTDKPL
FT                 RTYSLNTVTYGTASAPYLAIRSMKYLADLHMQTHKLGSQAINSSFYVDDFL
FT                 CGHDTAEGLQQLKAEVIEVLGKGKFELAKWHSNHPDFVDDSTIKDLNLEDG
FT                 SVTSTLGLAWNQRLDVLLFAFRPKCSVDAITKRTILSVASSLFDPLGLVAP
FT                 IIVTAKIILQELWIVKLQWDESVPQNLYLAWKSFAASLTSLESLKIPRFCM
FT                 QPNTKELQLHGFCDASIRAYGCCIYARTVAADGEVQVHLITSKCRVAPTRK
FT                 LSLPKLELAASHLLAQLYVKIKGIFTSKQTYLWSDSSIVLHWIQQHSSTLS
FT                 TFVGNRVSDIQEATPDCQWRHVPTKLNPADLVSRGCTPIELNESIWFMGPA
FT                 YLKQSSNTWPRDKHHEPDPEIVALEMRKSAFKATTDINYLLDTLRNISSHR
FT                 RCLRIVAWMLRFIHALRKPVELSTPSLSPQELQRAFNCIIWNLQQQHFADE
FT                 IHALNKNRQISSHIKFLNPFLQITDGYQLLKVGGRLELANAPEVQKHPIIL
FT                 PSKDDFVRHYVQFLHVQHYHAGSKALVALIRLQFWIVNARDLARSIVRRCV
FT                 HCVRYKPKLQQQLMGNLPVERLTPSRPFAHCGVDFCGPVNVYLRIQGKAPR
FT                 KAYIAIFVCFATKAVHIEVVSDLSTDAFLAALRRMIARRGLPVDIFCDNAT
FT                 NFTGASNQLKELRTYFFKQENQQSIISFCTNEFINFRFIPPRAPHFGGLWE
FT                 AAVKSAKGLMTRSLMNARCTFEELATITAEVEAILNSRPLTPLSSDPSDLG
FT                 ALTPGHFLVGDSLRALPTHNIEDEQLKSLDRWRLITGIKQYFWRRWLTDYF
FT                 NELNVRHKWTKPSPSISIGDMVLIHEDNVPSQKWIMGRITATIPGRDQRVR
FT                 VVDVRTTKGIIRRPVHKIAILPVS"
XX
SQ   Sequence 5652 BP; 1624 A; 1346 C; 1213 G; 1469 T; 0 other;
     ttttggcgcc caacgtgggg ccttgctgtt caagttccgt gcaacgcatt tagagttata        60
     atttggctta tgtacagaca tattctgtat acatacttct gtgcataagt gggatatatc       120
     agcatacaag ctattagttg tgcatgcact cgcttgcctt gctattcgca ccggtcactc       180
     actttggttg acttcgctgt cgctctgcga cccccgccgt cgcatcaccg agtcatcttc       240
     ttcgtttcgt cattctctcg cagcaaagca gcttctgctt tgcaatcttc gtcacttcgc       300
     tacccctacg atccccccgc gatcgcagca gcaagttatc gacagtgcgc ttgttatcat       360
     attcgtcagt ttggataaat catattcgtc aaattataaa tacataagtg cagttaatca       420
     caaacgcagt tatacaaacg catcaactgc actgaaagtc gacgctggaa ttactcttct       480
     tttgcttaat attgtatgcg ctcagttgag tgaaataaaa tcctaaagtt gttgatcaaa       540
     tcatgtctct agagagcctt aaagcacagc gcgcgaatac tcgccggaat attagccgaa       600
     ttcgtaatgt tgtcgatccc caactaagag aagggaaatc tgcaccagtt caagctgaat       660
     taaagtgtcg cttggaaatt ttggaagctt actttaagca agcaatggta ttgcagactc       720
     aaattgaaaa ggaatgttcg accgatacag gacgcaccga attggaggaa ctgtatgtag       780
     aaataaaagt ttgtattaca gagcaactca cggaggatat acacgaatca acattcgctg       840
     cggtatctgg gcccacattc ttatcgtcgg ccaagctgcc cagacttgcg ttacctacat       900
     ttgatggcaa ttatgcggac tacaagaatt ttagtgcgct attcaaccaa atggtggatc       960
     aacagaacag cttatcaacc atcgagaagt ttaatcaact gatcagctgc ttaaagggac      1020
     cagcattaga aacggtaaag gcatttcaga tcacacctga aaactaccga aaggcacttg      1080
     agcgcttgaa tcaacgctac gacaatccaa cattagtgtt cttggacaat atctcgtcgt      1140
     tatttatgct caagagtgta tcaaagtcaa acagccaaga aattcgaagt ttgattgaca      1200
     actctacagc attgtacaac tcgctaaaat cattaggcaa cgaggcacaa atcgcacagg      1260
     caatgttaat agccattgtt atggataaga tggacatgga aactaagcgc aaatggaacg      1320
     aatcattgga ttattccaag ttgcctacgt gggatttatg tgtacaggta gttgagaggc      1380
     attgccaata tttggaatca tgcggtaagt ccgaatcgag ccaggcccgt acagcgactg      1440
     ctagcaaacc acgaagccag acaaccacgc gacatggttt gtcttttaat tgttcaactc      1500
     actcatgtcc tctttgtctt agctcagagc atcgagtctc acgttgcagt cgacttcaag      1560
     agatgtcggt tgcagagcgc tatgaagcag cgaaacgaca tggactgtgc ctaaactgtc      1620
     ttggcaaggg ccaccaggca tccaagtgtc cttctactca acgatgtcga tgttgctcga      1680
     gacttcatca cagcttacta catcgagagg cagctgtgag tagatcgaca actatgttgc      1740
     ccagcggctc gaattcaaat gatgtggtga cacatacaca caccaatcga acagaccaag      1800
     tcattctagc aacggccatc gttgaggtca tggatgcatc tggaaactac aggatcggtc      1860
     gtgctctatt ggattcttgc tcacaggtga acttcatctc agaacagttc gcacaagcac      1920
     tacgcttgcc aaaggtcaaa cggcacatgc gaatctgtag cgttggtgag tcacacacat      1980
     acatcaagtt tggcacttcg gccacaatca aatcacgctt ggaggatttc aagatgccca      2040
     ttgatttctg cgtaacgtca cacattgcct atcagccgga atcggacatc gacacttcat      2100
     catggaacat accgaagaac acacctttag ctgatgagaa gtttcacaaa actcgtcata      2160
     tcgatttact tattggcgcc gaaacatttt ttgaaattct tgcagtggga caaatcaaat      2220
     tgggtcccaa ccttcctatg cttcagaaaa cgttacttgg atggattgtg tctggacgct      2280
     ataatggagg acagcaacag acacactgct actcgctctc acaggaggag tcaataaaca      2340
     acaatttgga acgactctgg cgtatcgaag atttgagtaa accaatcgac aagttcacac      2400
     ctgagcaact gcagtgcgaa caaatgttta ctcgctctgt acgccaacaa gcagatggta      2460
     gaattattgt tcggctacca ttcaaggatg atccacgaca tctaggatct tcatacgagt      2520
     ctgctaagct gagattcgag tcactggaac ggcgcttaaa tcgcaatccc gagttaaagg      2580
     cagcatacat agcatttctg cgcgaatatg aagatttaaa tcatatgagt ttggtacact      2640
     caccaaggct tgacgagcca cataattaca taccacatca ctgcgtcttc aagccaaata      2700
     gcacttcaac gaagctcaga gttgtcttcg atgcctcaaa tcgaacttca tcgcaacaat      2760
     cactcaatga tttgctaatg gttggaccga ctattcagac tgatctatat acgcttctgc      2820
     tacgctttcg aacgtacaaa tatgcactga ctgcagatgt tgtgaaaatg ttcaggcaag      2880
     tattggtgga ctatcgtgac cgcaagttcc aatccattct ttggagagat tcaacagaca      2940
     aaccactacg gacatattca ctaaacacag tcacttatgg tacggcctca gcaccatatc      3000
     tcgccatacg cagtatgaaa tatttggctg atctacatat gcaaactcac aaattgggat      3060
     cacaagctat aaattcatca ttctacgtgg atgactttct ttgtgggcat gacacagcag      3120
     aaggcctgca acaactcaag gcagaggtca tcgaagtact tggcaagggc aaatttgaat      3180
     tagcaaaatg gcattcgaat catccggact ttgtcgacga cagcacgatc aaagatttga      3240
     atttagaaga tggctcagtt actagcacat taggcttagc atggaaccaa cgtctggatg      3300
     tgttgctatt tgcctttcga cccaaatgct ccgttgatgc aatcaccaag aggacaattt      3360
     tatctgtggc atcttcactt tttgatccat tgggattggt agcgccaatc attgtgacag      3420
     caaagatcat tctacaggaa ctgtggatag tcaaattaca atgggatgag tctgtgccgc      3480
     aaaaccttta tttagcttgg aaatcgtttg ctgcatcact tacttcactg gagtcgctga      3540
     aaatacctcg attctgtatg cagccgaaca ccaaggagtt gcagttgcat gggttctgtg      3600
     acgcttccat acgtgcatat ggatgctgca tttacgcacg cacagttgca gcggacggcg      3660
     aggttcaagt tcacctgatc acgtcaaagt gcagagtagc accaactcgt aagttatcgc      3720
     taccaaaact ggaactcgct gcttctcacc tactggccca actctacgtg aaaatcaagg      3780
     ggattttcac atcgaaacaa acctatctgt ggagcgactc gtcgatagtt cttcattgga      3840
     tacagcaaca ttcgtcgaca ctatcaacct ttgttggaaa ccgcgtttct gacatacaag      3900
     aagctacgcc ggactgtcaa tggagacatg tcccaactaa attgaatccc gccgatctgg      3960
     tctcgagggg gtgtacaccc atcgaattaa acgaatcaat ctggtttatg gggccggcgt      4020
     atctaaagca gagctcaaac acttggccaa gagacaaaca tcatgaacca gatcctgaga      4080
     ttgtagcact tgagatgcgc aagtcagctt tcaaggctac gacggatatc aattatctac      4140
     tcgacacact cagaaacata agttcgcatc gtcgttgttt gcgaattgtt gcttggatgc      4200
     tgcgctttat acacgcgctt cggaaacccg ttgagctgtc tacgccctcg ctatcacctc      4260
     aagagctaca gcgtgcattt aattgcatta tttggaatct gcagcagcaa cacttcgcag      4320
     atgaaattca cgctttgaac aaaaataggc aaatatcaag tcatataaaa tttctaaatc      4380
     catttttaca gattacagac ggatatcaac tattgaaggt tggcggccgt ctcgaattgg      4440
     caaatgcacc ggaggttcag aaacatccaa tcatacttcc cagcaaagat gattttgttc      4500
     gtcactacgt gcagtttctt catgtgcaac actatcatgc tggctcaaag gcacttgtcg      4560
     cactaattcg tctgcaattc tggatcgtaa atgctcgaga cctggctcgc tctattgtca      4620
     gaaggtgcgt gcactgtgtg cgctacaagc caaagttgca acagcaactc atgggaaatc      4680
     tgcctgtaga gcgattgacg ccatcgagac ctttcgctca ctgtggagtt gacttttgtg      4740
     gaccagtcaa cgtctatctc cgcattcagg gcaaggctcc tcgcaaggcc tacattgcca      4800
     tatttgtatg cttcgccacc aaggctgtgc atatcgaagt ggtatctgac ctttcaacgg      4860
     atgctttctt agccgcgttg aggcgcatga ttgcacgacg aggattgcct gtggatatat      4920
     tttgcgacaa tgccacgaat ttcactggag caagcaatca attaaaggaa ctgcgaacct      4980
     acttcttcaa gcaagaaaat caacagtcaa ttattagttt ttgcacaaat gaattcataa      5040
     actttcgttt catcccaccc agagcaccac actttggcgg cctctgggaa gccgcagtta      5100
     aaagcgccaa ggggcttatg acgcgcagcc ttatgaacgc ccgctgcacg tttgaggaat      5160
     tggccacaat cacagcagaa gtagaagcca tcctcaactc acgcccactc acaccactat      5220
     catcagatcc aagcgacttg ggtgctctga cacctggtca ctttctagtt ggagactccc      5280
     tgcgagcatt gcctacacac aatatagaag atgaacagtt gaaatctttg gatcgctggc      5340
     gtttgataac tggtatcaaa caatattttt ggcgacgctg gttgacagac tacttcaacg      5400
     agctgaacgt gcgccacaag tggaccaaac catcacccag tatctctatc ggggacatgg      5460
     ttctcataca tgaagacaac gtaccttctc agaagtggat aatgggtcgc attacagcta      5520
     caattcctgg acgagatcaa cgagtacgag tggtagatgt ccgcactacc aaaggcataa      5580
     tccggagacc agttcacaaa atagcgattc ttcctgtctc ttgaaagact gcgtcattca      5640
     atggggccgg ga                                                          5652
//
ID   BEL1-I_DV   repbase;    DNA;    INV; 5575 BP.
XX
AC   scaffold_13049;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_DV;
KW   BEL1-LTR_DV; BEL1-I_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-5575
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3092-3092 (2009).
XX
DR   Genome; scaffold_13049; Positions  228922  223348.
XX
CC   Positions [4613-5194] - Integrase core
CC   'CTTTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..5575
FT                 /product="BEL1-I_DV_1p"
FT                 /translation="MFDEGASANGNDEATSASQVAVGTQAAVFKIKIKNLT
FT                 DRLNRLSSELDPARLRDVDDYELQDYISMASDLQAKFEIVCDGLLEVDHAS
FT                 VDEDLQTSFESTIRQLRLSLQRERGNRSKVQQIPHCSTFNSAAADDSRSTF
FT                 VVPNHSRLPQLKLPEFSGGYTEWADFSNLFTTVIDKDPYLTNIEKLQHLRS
FT                 CLKGTALDTIRSLEISNANYAAALELLDKRFNNKRLIFQAHISEILGLRKV
FT                 DKGATAQLREFSDKLNSHLRALKSMGSVEQIAGCVIVHTLLQKLDSVTQAS
FT                 WEDDAPLDVIPSCERFTTFIERRCQRLENADHATAMYTPSSQVGQNNSSRR
FT                 TFVVTRNGTSACVFCEVAGHSIYKCLQFANLSPLLRLHEAKRLALCLNCLQ
FT                 RGHQLRVCGSSACRVCGSKHHSLLHLGNTSSHIAASSPNNAQDTETYSSSQ
FT                 NTLAALLSSPLTTAQHLKHDVVLLATAVINVKNRAGSLVPCRALLDSGSQL
FT                 HIITSRLAHQLQLRKFKSTAIVSGIGDAAFASDGFSVNINVKSRVSEYSTC
FT                 IPALIAPSITDNQPGFTLDPASWNIPSNIQLADPEFFKSQQIDMLIGASLF
FT                 FDLLCVGQIKLAAGLPILQKTRLGWVATGGASHAGKSSFMAMRSMENPDLL
FT                 VDSHLQPNTQIDELIRRFWELECCTDPESLPNKEERDCEAHFQANFKRLST
FT                 GDYSVRLPLRLGMYPLGDSYQQAVRRFLNLERKLDRNPLLKPQYAAFIKEY
FT                 LDLGHMSLVTSAALGQCKYYLPHHCVLKEDSTTTKLRVVFDGSAVTTSGHS
FT                 LNDALMAGPTIQPKLFSILMRFRTFAVALTGDICKMYRCVRVEPADSYFQC
FT                 ILWRESQHQKIQIYKLDTVTYGTKPASFLSVRAMHQLAMDEQKTFPIGSDI
FT                 VKRDFYVDDLISGGSCVQEAIEILKQTSGLLAKGNFRLRKWCSSDTSVLQN
FT                 IPEEDRETLLKFDDGSDITKTLGLVWDPASDCFLFSFSPLRLPSRLTKRSI
FT                 LSAIARFYDPLGLVGPVITKSKIFMQDLWREKLDWDESLPVHLSTAWVNFC
FT                 ADFEYTQQFQYPRRALSSDSTVEIHGFCDASLSAYGACVYTVSKCNGNTSV
FT                 RLLCSKSRVAPVKTITVPKLELCGAALLAQLLSEICQMKVFDCRYYCWSDS
FT                 AVTLAWIRNDASKFNVFVANRVAAIQELTTGMEWHHIPTELNPADIISRGA
FT                 LPSELFRSPLWAHGPSFLSKGKEEWPASCVPVESLPELRHKVLLGTAAQPD
FT                 LSIGCKFINSFSKLQRVFAYVYKFVNRIRGAELTVDHLHHGTHWLLRSVQM
FT                 ATLSDDYKALKEGRHVKPSSSMASLAPFLDDFGLLRIGGRLKNSSLDFSAR
FT                 HPIILPRQHPVTRAIIVYFHKRNLHAGPRALLSSIRLQYWPIGGRKTVSSI
FT                 VAKCIICFRAKPRLAEHIMADLPADRLNTSYPFMVTGVDYCGPFYYKNEVR
FT                 NRPPVKCYISLFICFATKAVHLELVKDLSTTSFLNALKRFILTRSRPSRIW
FT                 SDNATNFVGAKNELADLNRLFLRDEHVKAVNEFCLTESIEWLFIPPRSPHF
FT                 GGLWEAAVKTAKHHFYRSVCSSILDFDSLRTLVCHITAIINSRPLLPLSEH
FT                 PGDLDVLTPAHFLGTAPSSSYIEPDLRQLNFNRLNYFQRVTYLQQVFWARW
FT                 REEYLTLLQQRSKWRTPQPGLSINDVVLVKDENLPPLKWPLARVQELISGS
FT                 DGVSRVAVLQTATGVIRRAVRKLCLLPKQDDVESPCLPTGGE"
XX
SQ   Sequence 5575 BP; 1384 A; 1401 C; 1288 G; 1502 T; 0 other;
     ttttggtgac cccgacgtga tttttctttc tttcattttt tctatttttt cttgtacttc        60
     gttcttgtcg tgtcaacgga cagttatcag ttcgggcaaa gctgtgtggt gagccgtttg       120
     cttgcgcatc tgcatacagt tggttgttat acataaacgc cgtagcaaat ccccgctaat       180
     cgttgcgcgc tataacccgc tatacgctat ctcgctcgaa cgaacacttg cgcgatcaga       240
     cttgtattgt agttcggctg tgtgaacctt gttgtgcgct acattcataa tgtttgatga       300
     aggtgcaagt gcaaatggaa atgatgaggc gacatcagct agtcaagtgg cggttggaac       360
     ccaggctgct gtttttaaaa taaagatcaa gaatttaact gatcgactca atagattgtc       420
     ctcggaactt gatcccgctc gacttcgcga tgttgatgac tacgagctgc aagattacat       480
     aagcatggca tctgacttgc aggcgaaatt tgagatagtc tgtgatggtt tgttggaggt       540
     ggatcatgcc agcgttgatg aggatcttca gacaagtttt gagtcaacta ttaggcagct       600
     acggctgtcc cttcaacgcg agcgcggaaa tcgaagcaag gttcagcaga ttccgcattg       660
     ttccaccttc aattcagccg cagccgatga ctcgcgttct acctttgttg ttccaaacca       720
     ctctcgattg cctcaactta aattgccgga gtttagtgga ggctacacag aatgggccga       780
     tttctcgaac ctgttcacca cggtcattga caaggatccg tatttgacca acattgaaaa       840
     actccagcat ctacggtcat gccttaaagg aacagcgctg gatacaattc gctcattgga       900
     aatttcaaac gcaaattatg ctgccgcttt agaactgctt gataagcgtt ttaataacaa       960
     gcgtcttatt tttcaggcac acatctctga aattttgggt ttgagaaagg tggacaaggg      1020
     cgcgactgca cagctgcgcg aattttcaga taagctcaac tctcatctac gtgctttaaa      1080
     atcgatgggc agtgtggaac agatcgccgg ttgcgtcata gtacatacgt tgctgcaaaa      1140
     actagatagc gttacgcagg ctagctggga ggatgatgcg ccgttggacg tcataccatc      1200
     atgcgagcgg tttacaacct tcatagagag gcgttgccaa aggctggaaa atgcggatca      1260
     cgctacggca atgtacacgc ctagctccca ggtgggccag aacaacagta gtagaagaac      1320
     gtttgtagtg actaggaatg gaacgagtgc ttgtgtgttt tgtgaagtcg caggccactc      1380
     tatttataaa tgtttgcaat tcgcaaattt atcgcccttg ctgcgccttc acgaagccaa      1440
     gcggcttgcg ctgtgcctaa actgcctgca aaggggacat cagctgagag tctgcggctc      1500
     cagcgcttgc agagtttgtg gaagcaaaca tcatagcttg ttgcatcttg gcaacacaag      1560
     cagtcacatc gctgcttcta gcccaaacaa tgctcaagat accgaaactt attcgtcatc      1620
     ccaaaacacc ttggcggcac ttttatcttc gcctctcact accgcccagc atctcaagca      1680
     cgatgtggtc ctgcttgcca ctgccgtcat caacgtgaaa aatcgcgctg gctccttggt      1740
     gccttgccgt gcgttgctcg actctgggtc gcagttgcac atcatcacct ctcgtcttgc      1800
     tcatcagctc cagctgcgca aattcaagtc aacagcaatc gtctctggca ttggtgatgc      1860
     agcatttgcg tccgatgggt tttcggtcaa catcaatgtc aaatctcgag tgtcggagta      1920
     ctccacatgc atcccggcct tgattgcacc atccatcacc gataatcagc ctggcttcac      1980
     tcttgaccct gcatcatgga acattccatc aaatatacaa ctagctgatc ctgaattctt      2040
     taaatctcag caaatcgaca tgttgattgg agccagtctg ttcttcgatc tgctatgcgt      2100
     cggccagatt aaactagctg ctggactgcc gatattgcaa aagactcgcc ttggttgggt      2160
     ggctacggga ggtgcctcac atgctggaaa atcatcattc atggccatga gatcaatgga      2220
     gaatccagat ctgctggttg actcgcatct gcagcctaat acacagattg atgaattaat      2280
     ccgtcgtttt tgggaattgg aatgctgcac cgaccctgag tccttaccaa acaaggagga      2340
     acgcgactgt gaggcacact ttcaggccaa ttttaaacgt ctgtcgactg gcgactattc      2400
     agttcgttta ccgctacgtc taggcatgta tccgctgggt gactcctatc aacaggcggt      2460
     tcgtcgattc ctgaacttag aaagaaaact agaccgtaat ccactattga aaccccagta      2520
     tgcagcattt atcaaggagt atcttgactt gggtcacatg tcacttgtta cctcagctgc      2580
     actgggccaa tgcaagtact acctgccaca tcactgcgtg ctgaaggagg atagcactac      2640
     aaccaagcta agggtcgtgt ttgatggctc agcagttact acctctggac actcgctgaa      2700
     tgatgcactg atggcaggtc ctaccatcca accgaagctg ttttcgatac tgatgcggtt      2760
     tcgtacattt gcagtcgccc tgacaggcga tatatgcaaa atgtatcgat gcgtacgagt      2820
     cgaacccgca gacagttatt ttcaatgtat cttgtggcgt gagtctcagc atcagaagat      2880
     acagatttac aaattagaca ccgtcaccta cggcacaaaa ccagcatcgt ttctctcagt      2940
     gcgagctatg caccaactgg ccatggatga gcagaaaact ttccctattg gctctgacat      3000
     tgttaaaaga gatttctacg tggatgacct catttctggt ggtagctgtg ttcaagaagc      3060
     aattgagata ttgaaacaaa catctggact actcgccaag gggaacttta ggctgcgcaa      3120
     atggtgttct agcgacacat ctgtactcca aaacataccg gaagaggata gagaaacgct      3180
     gcttaagttt gacgatggca gtgacatcac gaaaacgtta ggcctcgttt gggatcccgc      3240
     ttcagactgt ttccttttct ccttctctcc actgaggttg ccctccagac tgacaaaacg      3300
     gtcaatactc tccgcaattg ctcgctttta cgaccccctt ggtcttgttg gtcccgtaat      3360
     aacaaaatcg aaaattttta tgcaggatct ctggagagaa aagctggact gggatgagag      3420
     cctgcccgta cacttaagca cagcctgggt caacttctgc gctgattttg agtatactca      3480
     gcaattccag tatccccgtc gagcactctc atcagacagt acagtggaga ttcacggatt      3540
     ttgtgatgcc agcctaagcg cttatggagc atgcgtctat acagtctcaa agtgcaatgg      3600
     caacaccagc gtgcgtctct tatgctccaa atcgcgtgtc gcgcctgtga aaaccatcac      3660
     ggtaccaaag ctggaactct gcggagctgc attactggct caacttctca gcgaaatatg      3720
     ccaaatgaaa gtgttcgact gtcggtatta ctgttggtca gactctgccg tgactttggc      3780
     ttggattcgc aatgatgctt cgaaattcaa tgttttcgtt gccaaccgag tcgcagccat      3840
     ccaagagctc accactggaa tggaatggca tcatattccc accgaattaa acccggcgga      3900
     tataatttca cgaggagcgc tgcctagtga gctcttccgg tctccattat gggcccatgg      3960
     tccgagtttt ctcagtaagg gaaaggaaga gtggcctgcc tcctgtgtac ctgtcgaatc      4020
     cttaccagaa cttcgacaca aggtactcct cggaactgca gcgcaaccgg atctctcgat      4080
     tggttgcaag ttcatcaatt cgttttccaa gctgcagcgg gtctttgctt atgtttacaa      4140
     atttgtaaat cgaatccgag gagctgaact aaccgttgac cacttgcatc atggcacaca      4200
     ttggttgctg cggtcagtgc aaatggctac tctcagcgat gactacaagg cattgaagga      4260
     aggaaggcat gtcaaaccgt ctagctcaat ggcctctctt gcgccattcc ttgacgactt      4320
     cggcctactt cgcatcggtg gacggctgaa aaactcgtcg ttggacttct cagcgcgaca      4380
     tccgattata ttgccccgtc agcatcctgt gacgcgagca atcatagttt actttcataa      4440
     acgaaactta cacgctggac ctcgcgcttt attgtcttcg attcggctcc agtactggcc      4500
     cattggcggt cgaaaaacag tctccagtat tgttgccaaa tgcataatct gttttcgtgc      4560
     caagccacga ttggccgagc atataatggc agacctacca gctgatcgtc ttaatacatc      4620
     gtatcccttt atggtcactg gcgttgatta ctgtggacca ttttactaca agaacgaagt      4680
     gcgcaacagg ccaccagtga aatgctatat cagtctgttc atatgcttcg ctacaaaggc      4740
     ggtgcactta gagcttgtaa aggacttgtc cacaacatcg tttctaaacg ccctaaaacg      4800
     tttcatcctg actcgctctc gaccttcaag gatctggtct gacaatgcga caaacttcgt      4860
     aggtgccaag aacgaactag cagatctgaa ccgcctgttc ctgagagacg agcatgtcaa      4920
     ggccgttaac gagttttgcc taaccgaatc aattgaatgg ttgttcatcc ctcctcgctc      4980
     tccgcacttt ggtggactat gggaagccgc tgtgaagact gctaagcacc acttttatcg      5040
     atctgtttgc tcttccattt tggatttcga ttcgctgcgt acgctcgtct gccacatcac      5100
     ggcaattatt aattctcgac cattacttcc actttcagag catccaggtg atcttgacgt      5160
     cttgacaccc gcacacttcc tgggtacagc gccatcttca tcatacattg agcccgatct      5220
     aaggcagctt aacttcaatc ggcttaatta ttttcagcgc gtcacatatc tccaacaagt      5280
     attctgggcc cgttggcgcg aagagtattt gacgcttctt caacagcgct ccaaatggcg      5340
     cactcctcag cctggactct ccattaacga tgttgtcctt gtaaaggatg agaatctacc      5400
     gccgctgaag tggccactcg ccagagtgca agagctgatc tctggatctg atggggtatc      5460
     cagagttgct gtgcttcaaa ctgcgactgg agtcatacgt agagctgtac gaaagctgtg      5520
     tttgctgccc aaacaggatg atgttgaaag cccttgcctt ccaacggggg gagaa           5575
//
ID   BEL1-I_Dya  repbase;    DNA;    INV; 8382 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_Dya;
KW   BEL1-LTR_Dya; BEL1-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-8382
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1005-1005 (2009).
XX
DR   Genome; chr3R; Positions  168265  176646.
XX
CC   'CTTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1692..2744
FT                 /product="BEL1-I_Dya_2p"
FT                 /translation="MPIGHGEEVKTRLTVSKTSQRVRAKSESSVPFKSPSP
FT                 TRSKSPSTTPRKSTSTSLQVPRSAPNTKPNSDFSPQIIRATAKMAQAEADR
FT                 ALMKFMTITDRVGQFEARVNTPAVTSPSIHTSRVRLEQIRALWDKVEKEYE
FT                 ACSEALSGLGSTDTITVMQSKYDYCYAVYERCAASLNEIIEEGSRSQQAVQ
FT                 ASIPAPPQGGCRLPPVECDSFSGDYVHWPTFRDLFSAIYIYNPRLSEVEKL
FT                 FHLNAKTSGEAKSIVALSPLTNDGFESAWRNLQNRFENKRLLVNSQLKILF
FT                 NLPSVGLECGNSLKQLKSTIQGCLTALKIAKIATSNWDCLLVFLCSAKLPK
FT                 LTLGQQSA"
FT   CDS           6135..7337
FT                 /product="BEL1-I_Dya_3p"
FT                 /translation="MLSYDEKHPIILPARCRFAELQVLFIHRISLHGGNQL
FT                 MIRLIRSKFWIPKLKMLVKRTIHSCRVCVIHKKILQTQLMGNLPRARSTFS
FT                 RPFTHTGVDFAGPFDVKSYVGRACKITKGYVCVFVCFTTRAIHLEATSDLT
FT                 TEKFLAAFSRFFARRGCPQHVYSDNGKTFVGASTSLSKDFIEATRTSVLSQ
FT                 HSLQNVSWHFNPPGAPHMGGLWEAGVKSFKSHFYKYTAAGKYTFEELTTLL
FT                 AKIEACLSSRPISPMSEDPTDLIALSPGHFLIGGPLLAVAESEVKEGPSSI
FT                 INRWRRLKALNQQFCLRWKEEYLKELHKRNKWKFPTRDLQAGDMVVIKEEN
FT                 LPSNEWRLGRIQVVCPGVDGKVRVADALTARGVVRRLVAKMIRLPMDSPNE
FT                 SKDSSIL"
FT   CDS           4133..6085
FT                 /product="BEL1-I_Dya_1p"
FT                 /translation="MGGMWFRCPLKIFNNINLGHSRSIALAQFLRNEIRLN
FT                 KDVASKKQYDSVIQEYLDLGHMHQVSPDDSNNFYLPHHAVFKPDSTTTKVR
FT                 VVFNASNPSSNGNSLNDILHAGPVLQSDLTIQILKWRFFKYVFNADITKMY
FT                 RQIRVNSTHKRFQRILFRNKDGELCDYELDTVTFGVNCAPFLAIRVLQQLA
FT                 QDIRGQYPLASDNISNFMYVDDVLAGTHNKQSAVLAIEELRLALESAGFPL
FT                 RKWTSNERKLLQEVPKEHLISADFLELEEASTAKTLGIRWQATSDSFFFIP
FT                 MVIHLQTAYTKREVLSQIAKLFDPAGWLSPFVVRAKIFMQKIWLRELGWDQ
FT                 PLPRDLATQWREFLEGYPALKEIRIPRWVRFHPAAKLQYHAFCDASQDAYG
FT                 AAIFVRIETKEGCCTHLLTSKTRVAPVRSISIPRLELCGAVLLTELAALVI
FT                 SEMPPHVYETFYWTESTIVLAWLSKPACTWTTFVANRVAKIEQCTDGSKWG
FT                 HVRSEDNPADLASRGVSPQELKDSALWWRGPAWLHLKQEQWPSELLVHPET
FT                 ELEQRPVKCHTVAVPSAVEILERFSAFDRALRVLAYVFRFVKSCRREGVAS
FT                 SAELTAAELSEVQERLIVLTQKNEFPAEYKVLSNQQPATSSTRKRNFEPKP
FT                 LS"
XX
SQ   Sequence 8382 BP; 2161 A; 2154 C; 1911 G; 2156 T; 0 other;
     ttttggtcct tcgagccgga tcatccagcg ctttgccgag ataagtacgg tgccaaaatc        60
     cccaccatat atgtatatac atacgcatat atattgctgc gatcaaaatc cgctcactat       120
     caactagtgg ccacctgcgc aattatatat gttcgtgtgt atattttgta tgcatccttt       180
     cccttttatg ttatcaacca atcatcaact ttccaataaa aacaccaaat taaaaaacaa       240
     aattcgccac ccaaactttc acatacacaa aaacatacag acattccatg tatgttggcc       300
     gatcgatgta catacatatg tccattgcat ctgcatacat tgcgtacatg gcacatacgc       360
     aacgtcgtac atctgcatgg tcatagggtg tttcattaat tgccaaaaca ttcaaaccat       420
     tcaaacagac attaatatca tccaacatat gtacatgcat acattaatgt tattgtttac       480
     tttcacatac acgaaagctt ccacacacac gacaagcaca gacgattttt tggaccggca       540
     gataagaacc ggctgcagcc aacactagcg acgaacacat ccacgaacac aacctccagc       600
     gcagtaagag aaaaaaaaaa agaataacaa aaaaacaaat tttaaaaaca accatcggcg       660
     ctaacattta catattgcat atatatatat gtgtgtacca gcatatgtac gtatgtgtca       720
     aggtagccac tctagggcct attccaataa gggaccgttc acactgacac tacttttttc       780
     tagtttccca tagaaagtgt caatgtgtgt ttatttttgt ttctttaata ctttttttaa       840
     cttcgttctt gacttattcg tatatccgat tcgcatatat cgtctcaaaa aaattggccg       900
     aacatccacg cttatccagc gtcccacatc aacaattata gtccagtgtg atccagcgcc       960
     ctcatatctg ttttttttct caatcgatag caacgtttat tccgattatt gtgtattccg      1020
     cgcttaatcc agcgacccca ggttttatat aaaacgataa cataatttgt aacgattacc      1080
     atttgttttt caagcgcaat ccggcgcccc cttacctttg tctaaatcga ttaattccga      1140
     ttattcattt ttcttttgat tttgtctctt gctcaataca gcgaccccgg tgtttgtcac      1200
     atcttttttc acgcgttgtc ctgcgccccc acaccctgtc taaattgatg cgataatttg      1260
     gttcttaaat tacttttgtg cgctttatcg agcgacccag tataactcca aatcaacaat      1320
     cctaagcttt cgattatttt gggtgtccgc tttatctagc gactccagtt atttttttcc      1380
     aaatacggaa cattccgatc gatccaactg gtcgcacgct tatccagcgt cccaatatat      1440
     aagttgtttc gatcttggtt gcacgttttt tccagcgtcc caatatagaa gttgtttcga      1500
     gcttgtttgc acgctttatc cagcgtccca atatataagt tatttcgatc ttggttgcac      1560
     gccttatcca gcgtcccaat atataagttg tttcgagctt ggttgcacgc tttatccagc      1620
     gtcccagtat ttgtccaagt gaacagactg tttcgccccc acacggtttt cggctcctcc      1680
     gagagcttaa tatgccaatt ggccacggtg aggaggtaaa aacccgtttg actgtttcca      1740
     aaacgtctca acgagttaga gccaagagcg agtcctctgt gcccttcaaa agcccaagtc      1800
     ccactcgaag caaaagccca tcgacaactc cacgaaaatc cacgagcacg tcgctccaag      1860
     ttccacggtc agcaccgaac acgaaaccga attcagactt ctcaccccaa attattagag      1920
     caaccgcaaa aatggcgcaa gctgaggcag acagggcctt gatgaaattc atgaccataa      1980
     ccgatagagt aggtcagttc gaggccagag tcaacacccc agcagtcaca agtccgtcaa      2040
     tccacacaag tagggtgcga ctcgagcaga tcagggccct atgggacaag gtggagaagg      2100
     aatacgaggc gtgctccgaa gctctgtccg gtctgggatc cacagacaca ataacagtca      2160
     tgcagtccaa gtatgactac tgttatgccg tttacgagcg gtgcgcagcg agcctcaacg      2220
     agatcattga agaaggttca cgctcgcaac aggccgttca ggcctccatt ccggcgcctc      2280
     ctcagggagg gtgtcgctta cccccagtcg agtgcgacag tttcagtggg gactatgttc      2340
     actggcccac gtttcgggat cttttctcag ccatctacat atacaaccct cggctttcag      2400
     aagttgaaaa gttgttccat ctcaatgcta aaactagtgg tgaggctaaa tccattgtgg      2460
     ccttatcacc cttaaccaat gatggattcg aatcagcctg gagaaacttg cagaatcgtt      2520
     tcgaaaacaa gaggctactg gtcaacagtc agcttaagat tttgtttaat ttaccttctg      2580
     ttggccttga atgcggcaat tccttgaaac agttaaagag cacaattcaa ggttgtttaa      2640
     cagctttgaa aatagcaaaa atcgccacct ctaactggga ttgcctgctc gtttttctgt      2700
     gctctgccaa gttgccaaag ctaacgctgg gtcaacagtc agcttaagat tttgtttaat      2760
     ttaccttctg ttggccttga atgcggcaat tccttgaaac agttagagag cacaattcaa      2820
     ggttgtttaa cagctttgaa aatagcaaaa atcgccacct ctaactggga ttgcctgctc      2880
     gtttttctgt gctctgccaa gttgccaaag ctaacgctgt ctctatggga acaatccctt      2940
     atgagtaaga cagatattcc actgtgggct gaattccagg ctttcttaca agatcgtcat      3000
     cgaacgctcg aggcgatcga agattttaag ccaaacgctc aatccagagc actgcggact      3060
     gacaatagcc cgcgggcgat ccagaccttt gagaatagag tgacggtaac tccacaatcc      3120
     tgtaaacttt gttcgcaaga gaaccatcct atccgagtat gtccgttatt cttacgaatg      3180
     ccagtcggag agcgggagaa atatataaaa cagcagaagt tgtgcttaaa ctgtttttct      3240
     agaacgcatc tgcttaggga ttgcactagc acgcataatt gcaatacttg taaagggcgc      3300
     cacaacactc tcctgcaccg aagcggcact ccaccagtcc agtcagcggt caatcctgac      3360
     caccaggccc acgtatccac atttaaccac cagcaagata tacagtccac tccattaacg      3420
     aatcaaccga atgtgcaaac gtttctggct gtaaacactc aaggggtcct gctgagtaca      3480
     gctttaatag agatttgcca ttaaggcatc aaatactcag cacgggcact tattgactcg      3540
     ggttctgagg caacctttat ttcagaacgc ttgttcaact tgattaagtt gccttatgag      3600
     tccatccatg ctcaagtttc agggctcaac ctcactgttg cggcttagcc ccgtaagcgc      3660
     tgtcaactca gcataggttc tccggtcaag ccccacatcc aaattaagac ttctgcatat      3720
     gtactaccac aattggccgg gagtctccca tcctttactt tacctgagga ctctttaaag      3780
     catctgccgc ctttgtaact agcagaccca aatttctacc ggagttcgca gatcgacgtt      3840
     ctgatcggtg ccgatatcct gccatcgatc attctcagcg gctcccatcc caatatctgt      3900
     ggcacgcttc ttggccagaa gaccatattc ggatggattc tttgcggtcc gatcgcaaca      3960
     aatcccacaa gcagaatatg ctcattttcg tcccgactag ctgtcaccga gtccagactg      4020
     gacaacattc tcacaaaatt ttgggaggtg gaggatgttc cagtgaagcg ggttagggaa      4080
     tccacctcga tttgcgagga aaactttgtc caatctacca aaaggaacga gaatgggagg      4140
     tatgtggttt cgttgccctt taaagatatt taacaatatc aaccttgggc actccaggtc      4200
     gatcgcactg gctcagttcc tccgaaacga gattcgactg aataaagacg ttgcgtcaaa      4260
     aaagcagtac gactcagtca ttcaagagta tttagattta ggtcatatgc accaagtctc      4320
     tccggacgac tctaataatt tttatttgcc ccatcatgct gtcttcaaac cagacagcac      4380
     cacaacgaag gttcgcgttg tgtttaatgc ttccaatcct tcatcaaacg ggaacagcct      4440
     caatgatatc cttcatgcgg ggcccgtact gcagtccgat cttactatcc agattctaaa      4500
     atggcgtttc ttcaagtatg tgttcaatgc ggacatcaca aaaatgtaca ggcaaattcg      4560
     ggtaaattca acccataagc gctttcagag aatcctcttt cgcaataagg atggagagct      4620
     ctgtgactat gaactcgata cagtcacctt cggcgtaaac tgtgcgcctt tcctagccat      4680
     ccgcgtacta caacagttgg ctcaggatat ccgaggccaa tatcctttgg caagtgacaa      4740
     catctcgaac ttcatgtacg ttgacgatgt gctcgcaggc actcacaata agcagtcggc      4800
     agttttagcc atcgaggagc ttcggctggc tcttgagagt gctggttttc cattacggaa      4860
     gtggacctcg aacgaaagaa aactcctaca agaggttcca aaggagcact tgataagtgc      4920
     agactttctg gagcttgaag aggctagtac ggcgaaaact cttgggatcc gttggcaagc      4980
     tacatccgat agtttctttt ttattccaat ggtgatccac ctccaaactg cttacacaaa      5040
     acgagaggtt ttatctcaga tagccaaact gttcgaccca gcaggatggc tatcaccttt      5100
     cgtagtccga gccaagattt ttatgcagaa aatttggcta cgcgagctgg gctgggatca      5160
     gccactcccc agggatctcg cgacccagtg gcgggagttc ctagaagggt atcctgccct      5220
     gaaggagatt cgtattccga gatgggtacg tttccatcca gctgcgaaac ttcagtacca      5280
     tgcgttttgc gacgcgtcac aggacgccta tggggctgct attttcgtcc gaatcgaaac      5340
     gaaggaaggc tgttgtaccc atctacttac atccaaaacc cgagtcgctc ctgtcagatc      5400
     catctccata ccacgcttgg aattgtgcgg agcagtgctg ctcacggagc tggcagctct      5460
     agtaatttct gaaatgcctc ctcatgttta tgagaccttt tactggaccg aatccacgat      5520
     cgttcttgca tggctgagta agccagcgtg cacctggaca acattcgttg ccaacagggt      5580
     cgcaaaaatc gaacagtgta ccgacggaag caagtgggga catgtacgat ccgaagacaa      5640
     tccagctgat ctggcaagcc ggggcgtctc accccaagag ctgaaggaca gcgcactgtg      5700
     gtggcgtggg ccagcttggt tgcacctcaa acaggagcag tggccgagtg agttgttggt      5760
     ccatccggag actgagcttg agcagcgccc cgtcaaatgt cacacggtcg cagtgccctc      5820
     agcagttgaa atcctagaga ggttctcagc ttttgaccga gctctgcgtg ttcttgccta      5880
     tgtgtttcgt tttgtgaaaa gttgccggag ggaaggtgta gcctcatcgg cagaactcac      5940
     tgcggcggag ttgtcggagg tgcaggagcg gctaattgtg ctcactcaga agaatgagtt      6000
     tcccgccgaa tataaggttt tgagcaacca gcaaccagca accagttcca cccgcaagcg      6060
     caatttcgaa cctaaacccc tttcttgacg gggatggggt cttgagagca agcggcaggt      6120
     tacaagcatc tgaaatgctt agttatgatg aaaaacatcc gatcatcctt cctgcacggt      6180
     gtaggttcgc cgaacttcaa gtcttgttta ttcatcgcat atccttgcat ggggggaatc      6240
     aattaatgat ccgactgatc cgttccaaat tctggattcc caagcttaaa atgttggtga      6300
     aacgaacaat acattcgtgc cgagtgtgtg ttattcacaa gaagatactg cagacgcagt      6360
     tgatggggaa tttgccccgt gcgaggtcca cgttttccag accgttcacc catacgggag      6420
     tggacttcgc aggaccattt gacgtcaaga gttatgtcgg tcgagcctgc aaaatcacaa      6480
     aggggtacgt gtgcgttttt gtgtgtttta ctacccgggc tatccacctc gaagcgacct      6540
     cggacttgac tacagagaag ttcctggccg cattctcccg ttttttcgct cggcgtgggt      6600
     gtccacaaca cgtctactct gacaacggga aaacgtttgt cggagcttcc acgtccttat      6660
     caaaggattt cattgaagct accagaacat cggttttatc gcagcacagt cttcagaatg      6720
     tgtcctggca tttcaaccct cctggcgcac ctcatatggg agggctttgg gaggcaggtg      6780
     tgaagagctt caagtcgcat ttttacaagt acacagccgc tgggaaatac acgttcgagg      6840
     aactgactac cctcctggcg aagattgagg cctgtttgag ctccaggccc atctcgccaa      6900
     tgtccgaaga tcccacggac cttattgctc tgagccctgg gcattttcta atcggtggac      6960
     cattacttgc ggtagcagaa tctgaggtta aagaaggtcc cagctccatt atcaatcggt      7020
     ggcggaggtt gaaagccctg aatcagcagt tctgcctgcg ttggaaggag gaatacctaa      7080
     aggaactcca caaaaggaat aaatggaagt tcccgacgcg agatctccag gctggagaca      7140
     tggtggtgat caaagaggag aacttgccat ccaacgagtg gcgacttggg cgtatccaag      7200
     tggtctgtcc cggcgtggac ggcaaggtca gagtggcaga cgctcttaca gcacgggggg      7260
     tcgtccgaag actagtggca aaaatgatcc gccttccaat ggacagcccg aatgagtcga      7320
     aagactcctc catactttaa gtatttgaaa acctgctact gacgagtcct aagttgtgtc      7380
     gtcctacgtc gtccatgtgt catgatcatc cgcatctatc tcatctaatt tttttatttt      7440
     gcccatttct tatgtagccg catatacaat ggctccagcg atccgccacg atgtataccg      7500
     ctgtcgagtg tgcagggggg ttcatccatt gaggagctga cagcgattcc tgcaactacc      7560
     ggctgtgaag cggctccggg cagttttgat taacaagtac tgcgctaact gtctggccca      7620
     cgagcattcg ggccggtcgt gtcgcagcaa agcaaagtgc cgcatctgcc gagaggccca      7680
     ccacactctg ctgcacatcc gcggtgaaca gccaggctct tcgaggcctc aacggaagcg      7740
     tgagccacaa gcagcgcctc agcctcaacg gcgtcaggag gtgggttcga ccgggtcacg      7800
     acgctcagcc tcgccgatgg atagtttccc accccgcagc tcattgtcaa cgccgacggg      7860
     cgcgcctagc ttggtgcgga cgagcgtctg catccttccg accgctgccg tgctcattgg      7920
     gtccgagcag aagagattcg atgtgcgagt cttggtggat ccgtgctgcc ccgtgagtcg      7980
     catccacgtc ttgctggtga aggccctcaa cttggccgtc acgggcgtgg gcaacgaacg      8040
     gctgtgcacc accgagattc gctcaaaaac gtcccggatg agcaaacagc tgctgatgct      8100
     ggtggacgag cagatgcaga gccggactcc ggcacagccc ctggatccga aggtgcagga      8160
     catgttccac aacatgacgc tagcggatga ccggtggttc cacccagcgc ttgtctcggc      8220
     tgtccttgga gcagacgttt acgctgacct gaagctgccg ggtatcatcg cgagccagga      8280
     cggcctgccc atggcacaaa attccaagct gggatggatt ctttcgggac gctgttctct      8340
     gtcctaaatt tgcaagtatt cctcttgcaa ggggggggag aa                         8382
//
ID   BEL1-LTR_AG repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL1-LTR_AG is a long terminal repeat from the BEL1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL1-I_AG; BEL1-LTR_AG; BEL1_AG; Bel clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-290
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 9-9 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL1-LTR_AG is a long terminal repeat from BEL1_AG
CC   retrotransposon.
CC   There are more than 100 copies of BEL1-LTR_AG in the genome.
CC   See comments for BEL1-I_AG.
XX
SQ   Sequence 290 BP; 102 A; 62 C; 60 G; 66 T; 0 other;
     tgttgatgac agcgccgcat aattaggtca tcacggcctg ggaactgacc gaccgaacga        60
     aaacaattgt aagcaaatct aatgtaaaca atatcgacca aataaaaact gctgatcgcg       120
     atcgatcagc agaaaattag tatataagtc aggaataagc atgaataaat cgactttcaa       180
     gcacaagaac tcaaagacta agttgtttgt ctgttccaag ccaagtcgga cggtaaaatc       240
     ctcctgtctt ggcgcttccc aacgagttca gactcggtgc ggaaaatata                  290
//
ID   BEL1-LTR_AP repbase;    DNA;    INV; 334 BP.
XX
AC   Contig29878;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1AP; BEL1-I_AP;
KW   BEL1-LTR_AP.
XX
NM   BEL1-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-334
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 430-430 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   Genome; Contig29878; Positions    1243    1576.
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 334 BP; 100 A; 51 C; 58 G; 125 T; 0 other;
     tgcgtatcgc atattcgcat cgtatatgtg ttttgtgtca cttgtatatt atgaatatct        60
     ataatgtcga ttattgttat tattatttat tgtacgatac tgcgataaga tattggccgt       120
     acgtctgatc gctgtccgta catcgcagta ttgtacgata acagttttta gtcgttttgc       180
     ggtctgcgta cctgtgaggt ctgcgctatt ttgtacagag cgtaagacct cacacaaaaa       240
     ttataattat tattatttta aagtgtaatt aaagaaataa agagattgca tttaaaatac       300
     cacaattacg attcaattat taatatacag tcca                                   334
//
ID   BEL1-LTR_Dmoj repbase;    DNA;    INV; 305 BP.
XX
AC   scaffold_6489;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL7_Dmoj;
KW   BEL1-LTR_Dmoj; BEL1-I_Dmoj.
XX
NM   BEL1-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1006-1006 (2009).
XX
DR   Genome; scaffold_6489; Positions   46344   46040.
XX
SQ   Sequence 305 BP; 79 A; 67 C; 46 G; 113 T; 0 other;
     tgttgggcca aattcactta tcttattgtt aacttgaatt ttatacctat atttttacat        60
     ttgggttcac cctaattact ctatctctct tgcgtggtga tttcttatta cttgcattaa       120
     ttcgcctagc tctaagcaag ctgcgcttgc tcatacgttt gtacttttag tgtatatcaa       180
     gaactctacg aataaacgtt gcacctacga tgcgctgaat ttcatatacg gctcatttgt       240
     ttagttagaa cagcatcccc atactctgaa ctcatgctag acagaaaaac gcttctgatc       300
     ttaca                                                                   305
//
ID   BEL1-LTR_DV repbase;    DNA;    INV; 426 BP.
XX
AC   scaffold_13049;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_DV;
KW   BEL1-I_DV; BEL1-LTR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-426
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3093-3093 (2009).
XX
DR   Genome; scaffold_13049; Positions  223347  222922.
XX
SQ   Sequence 426 BP; 124 A; 96 C; 78 G; 128 T; 0 other;
     tgtttggtca agtaacagca gagataacac cgacggctgc ggacatcatc caacagcaga        60
     aaataacaat cataattaca gcctaagagc aaatagtttt tttgcgcgct ctttgtaagc       120
     tgctgtccac tctccttctg aattgctttg cttgcattgc tgcccttcgc tctaaccggc       180
     gagcgtctta ttggagtttc gtttcgattc gctttacata ttgtcataac cagtcagtct       240
     ttcgttttga tcgcaaccta ggcacaacta attcgagttg gctgccaagc aacaatttaa       300
     aacttataaa ttctaataag tgccctgcgc ggcaaataaa tccatttgaa aactaatcta       360
     agtgtttgaa tttcgctgca caagcagtta gaattaattg gttgcaaaaa agcttgcaac       420
     tacaca                                                                  426
//
ID   BEL1-LTR_Dya repbase;    DNA;    INV; 214 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_Dya;
KW   BEL1-I_Dya; BEL1-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1007-1007 (2009).
XX
DR   Genome; chr3R; Positions  168051  168264.
XX
SQ   Sequence 214 BP; 59 A; 54 C; 47 G; 54 T; 0 other;
     tgttcatgcc gaacagctga gtccggtatc ccgccagcag agcatcgctg ttggcggaat        60
     gtttcggaag tgggacacga agccgttatt ttatgtgaag aaattacttt aaaataaaac       120
     cccaaacgag aaggacgaac tccaacacct tttgtttcat taaactctgg gaatatttgc       180
     gacaccagct tttccggccc ccgacgtctc taca                                   214
//
ID   BEL1-NVi_I  repbase;    DNA;    INV; 6018 BP.
XX
AC   AAZX01006515;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1-NV;
KW   BEL1-NVi_LTR; internal portion; BEL1-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6018
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1167-1167 (2007).
XX
DR   Genome; AAZX01006515; Positions   21758   15741.
XX
CC   Positions [5076-5636] - Integrase core
CC   'GTGTC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..2100
FT                 /product="BEL9-NV_I_1p"
FT                 /translation="MAASGRRHRPLDNVPENVAMGPGDPGVVPAAIENDAA
FT                 QRDASPPHQDRCAATGARNRVPAAPQQHVAAVGDAAAPPPRRRAPAAARNR
FT                 APLAPLAAAAVGDAVAPPPRRRAPAGGRNRVPPAPLAAAAVNNADAAPLHR
FT                 RTPVGARNRAPPAPPPVAVAEGAAVPAAPPSHRRAPAGTRNHVLPAPQRAD
FT                 VLRNKQKNRPCLRSQLQRSAAAISERYRAKRRQRNKSVGDRLAKRPRFNCD
FT                 FSDESSSSLDVDNSLHRPFFNRNQFEPRVGNFNLLNNEINDNYFRVANGMN
FT                 NRAHSTSYNNPLTNKNCNHSSEYVIERFAKALENTCLQSNQSNLNSRLLHR
FT                 MSTSKVLPTFSGDPLEWTRFKKAFEVSTSLGKYSDSENLMRLGEALKGNAR
FT                 EAARSLFVAGNNTEDIMKTLEMRFGNSRLILNNIILEIKNLPSINSKKISI
FT                 IEFATRLRNAVLAIKSFDNHSGYLSSPDLSNELIRKLPDAMISNYVRFVKA
FT                 QGYERSDLEKISDFIFEEAELNIAAGIFPTSSSETTNEASDSSTKKPRNPQ
FT                 KIVCALNVNEGSNNALEQPSGNCEHCGRKNHKIYTCRDFMKAPVSQRWKVV
FT                 KSNRLCFRCLEKGHSRDECVKESCKHCARKHHELLHFHGQKNSNSRVENSQ
FT                 KNDLVPVSTATEPVLSTLNMSL"
FT   CDS           3513..5975
FT                 /product="BEL9-NV_I_2p"
FT                 /translation="MHSWSSNYKSVLHNNNINCDSDQLIKTGTEIQSGEKV
FT                 LGLKWLDVSDELSFNINLSRIPIDLHKGVRKPTKREFLSVIMSVFDSLGLI
FT                 TPFTIRSRILMQNVWSSGITWDAELHDTEFVQWKQWLCELKEVVECKVDRC
FT                 YQLKNNQANSAELHVFSDASSKACTAVAYWRFKLSEDRYHVSIIMAKSRVV
FT                 PLKGETIPRLELQAAVIAVRLAKLIAEEHRFVITKRVFWCDSKIVLYWIKR
FT                 DLKDFKVFVANRLSEIREKSSASEWRWIHSAENPADDGTRLTGQTLKSTSR
FT                 WFLRPNFLREKETFWPADEFHSENLDQNVNLEHKKSVVEVYTVVNKTRIID
FT                 LSRFSLWTRLISTTTRIYEAVDIWKNQARTPLQRYLLAEETCIKISQLNSF
FT                 EKEINALKNKDKLPKDSRILTLNVYLDECGLLRSNSRIIKLKAVEINTKPL
FT                 VLDASESGTQLLIKYYHGKYYHASHKTAENELRQRYWVVGLRNKLRSLVAK
FT                 CAICRMQRGRPSNPIMSALPECRLAYYERPFRYCGLDYFGPMTVKIGRRRE
FT                 KRWGAIFSWMSTRAVHLELAHSLSAGSAIMALRRFTARRGTPSKMYCDNGT
FT                 NFRGMSLEPAREIREINREKLQEYANRNKIDWIFNPPTASHMGGAWERLIR
FT                 SVKTALAVILKEQAPKEETLLTILAEVEHAINSRTLTQLSVDPRDQEALTP
FT                 NHFLLGFSSEQIRINRSDVQSTCPRKQWQIAQKFADAFWKRWLKEYVPTLI
FT                 PRSKWHENDESIKVNDIVLILDDNVERNQWRKSVVTRVLPGSDGQIRIAEE
FT                 RTANNILLRPTRKLIKFAA"
XX
SQ   Sequence 6018 BP; 1963 A; 1122 C; 1344 G; 1589 T; 0 other;
     ttttggtgcc gaaacccggg acagttttgt gttccattta ttttttttct tttttgcgcc        60
     gagaagttta tccagaagaa ggttagaatg gcggcttcag gtcgccgcca ccgaccttta       120
     gacaacgttc cagagaacgt agcaatgggc ccaggagatc caggagttgt gcctgctgcg       180
     atcgaaaacg atgctgctca aagagatgca tcgcctccac atcaggatcg ctgtgctgca       240
     acgggtgcgc gtaatcgtgt gccagccgca cctcaacaac atgttgcggc agtaggcgat       300
     gctgccgcgc cgcctcctcg tcgacgagca ccagcggctg cgcgtaatcg cgcgccgctc       360
     gcgcctcttg cagctgcggc agtaggcgat gctgttgcgc cgcctccacg tcgacgagca       420
     ccagcgggtg ggcgcaaccg tgtgccgccc gcgcctctcg cagctgcagc agtgaacaat       480
     gctgatgcag cgcctctaca tcgacgaacg ccggtgggtg cacgaaatcg cgcgccacca       540
     gcacctcctc cagttgcagt cgcagaaggg gctgctgtac ctgctgcacc gccttctcat       600
     cgtcgggctc cagcaggtac acgtaatcac gttctgcctg cgcctcagcg tgcagacgta       660
     cttcgcaaca aacagaagaa tcgtccatgt ttgcggagcc aactacaacg atcagctgca       720
     gctattagtg agcgatatcg tgctaagcgt cgtcaaagaa acaagtcagt aggtgatcga       780
     ttagctaaac gaccgcgttt taattgcgat ttttctgatg aaagttcttc gagtcttgat       840
     gttgacaata gtttacatag acccttcttt aacagaaatc aattcgagcc tcgtgttgga       900
     aatttcaatt tgttaaataa tgaaatcaat gataattatt ttagagttgc caatggtatg       960
     aataatcgcg cgcatagtac ctcttataat aatcccttaa cgaataaaaa ctgtaaccac      1020
     tcgagcgagt acgtaataga gagatttgct aaagcattgg aaaacacatg tttacagtca      1080
     aatcaaagta atcttaattc taggttattg cacagaatgt ctacgagcaa agttttgcct      1140
     actttctcag gagacccgct cgagtggacg agatttaaaa aagccttcga agtttccaca      1200
     tccttaggaa aatactcaga tagcgaaaat ttgatgcgtt taggtgaagc gttaaaaggt      1260
     aacgctcgag aagcagctag atcattattc gtagcaggaa acaatacgga ggatattatg      1320
     aaaactttag aaatgcgttt tggcaattcg aggctaatat tgaataatat tattttagaa      1380
     attaaaaatc tgccgagtat taattccaaa aagataagca tcatcgaatt tgcgacgcgt      1440
     ttgagaaatg cagtgctagc gattaagtcg tttgacaatc actcgggtta tttgagtagt      1500
     ccggatttat caaacgagtt gattagaaag ttgcctgacg cgatgatttc gaattacgta      1560
     agattcgtca aagcgcaagg atatgaaaga tctgatttag aaaagatttc tgattttatt      1620
     tttgaagaag cagaattaaa cattgctgct ggtatatttc cgacttcatc gagtgagaca      1680
     acgaatgaag cgtccgattc gtccacaaag aaacctcgta atccacagaa aattgtatgt      1740
     gcgctaaatg taaacgaggg ttctaataat gcattggaac aaccatctgg taattgcgag      1800
     cactgtggtc gcaaaaatca taaaatttat acgtgccgtg attttatgaa agctcctgtt      1860
     tcgcagcgtt ggaaagtagt aaaatcaaat cgattgtgtt ttagatgtct cgagaagggt      1920
     cattccaggg atgaatgtgt taaggagtca tgcaaacatt gcgcgcgcaa gcatcacgaa      1980
     ttattacatt ttcatggaca aaagaattct aacagtagag tagaaaattc acaaaaaaat      2040
     gatttagtac cagttagtac tgcaacagag cccgttttat ctactctaaa tatgtcatta      2100
     tgactagagc aacgtgtttt actcaaaatg attgaaataa cagtgatagg tacacattcg      2160
     agcaaaatga tttacgcact attagatgaa ggttctacgg taacgataat caactcaata      2220
     attattaacg agataggagg agaaaggtcg cgctacgtat ctctcgcagg cgtaggatct      2280
     gaaaaatcta ttgcagttat aaaccaaaag gttaatatta aaattcaaaa tgattacgac      2340
     acgtattcct tagcgagtgt ttagtaattg acgaccttgc acttcccatg caacatgtat      2400
     cttcagagat cgcggagtta tgtagtaaac gcgcaaaggt tccgatatgc gattataacg      2460
     cagtaccagt tttgttgatc ggacaggata attgtaaatt aatattaacc tcagaatttc      2520
     gagaagttat cgggaaaaat caagtcgttt cgcgatgtga attaggatgg gttgtacacg      2580
     gacattacaa aacttccgaa ttttcaaggc gcgtcaattg tgtaaataaa ctaaatcaat      2640
     gcgatgaaat tatatcacga gacaatacgt tagatagact tgttaaagcg tattttgata      2700
     tcgatgcagt cggattaata aacaattcaa ttcagtcaac agcagatgaa caggctttaa      2760
     aaattttaga agaaacaagc cgctatatcg agaacgcgtg ggaagttggt ctattgtgga      2820
     aaggagaaag cgtaaatctt ccgaatagcc gtgtgacagt attacgtcgt ttgcagttat      2880
     tagagcgaaa attagacaga gacaaagact atggggaaaa atattatcga gagatggata      2940
     gactatttga aaacggattt gcaaaaaaac taacggacga gatagacaat gtagaatttg      3000
     gtacttaccg catttcggag tattgaatat taataaacca ggaaaagtac gcctcgtttt      3060
     cgacacagca gctacaacag ctaacatcag tctaaacggg cttttactcg cgggtccaaa      3120
     ttttttaaac gtgctaccag gagtattaat gcgatttaga caatttgcag ttgctatcaa      3180
     aggagatctt aaagatatgt tcttaaagat taaaatcaat aaaatagatc aaaatgctca      3240
     gcggtttctt tggcgaggca ggagtagaac cgaaaaaccg caggaatacg ttatgacgac      3300
     tgtcttgttc ggagcgaaat cttcaccatg cacagcttta catattaaaa aataaaaacg      3360
     ccgcgttgta tgcttcaaaa tacccgtcca cagtaaggag tttaatcgaa aactgctata      3420
     tggacgacta cttggatagt tgcgagaccg tcgatgaagc agaatcacgg gttaaaaaag      3480
     ccatagaaat aaatgcgaat gcaggataga ttatgcatag ctggtcgagt aactataaat      3540
     cggtgctgca taacaataat attaattgtg attccgatca attaattaaa acaggcactg      3600
     agattcaaag tggggagaaa gttttagggt taaaatggct agacgtatct gacgagttat      3660
     cgtttaacat caatttatcg agaataccta tcgatctaca taaaggagta agaaagccaa      3720
     caaaacgcga atttttatcc gtgataatgt cggttttcga ttcccttgga ttaataacac      3780
     ctttcactat aagatcgcgt attctaatgc aaaacgtttg gagcagtgga ataacttggg      3840
     acgcggaatt acatgacacc gaatttgtac agtggaaaca atggctatgc gaattgaagg      3900
     aagttgttga atgtaaagtt gaccgatgtt atcagttaaa aaataatcaa gctaattcag      3960
     ctgaattaca cgtgtttagt gacgcaagtt ctaaagcctg tactgctgta gcttattggc      4020
     gcttcaaatt aagcgaagat cggtatcatg tttccataat catggcaaaa agtcgcgtcg      4080
     tgcccttaaa aggagagaca atccctcgat tagagctaca agctgccgta atagccgttc      4140
     gtcttgccaa attaattgcc gaagaacatc ggtttgtaat aacgaaaaga gtattttggt      4200
     gcgattcaaa aatagtattg tattggatta aacgcgatct gaaagatttc aaagtttttg      4260
     tcgcaaatcg tctgtcagaa atacgcgaaa agtctagcgc ttccgagtgg agatggattc      4320
     attcagcgga aaatccagcc gatgatggta ctaggttaac aggtcaaact ttaaaaagta      4380
     caagtagatg gtttcttaga cctaattttt tacgcgagaa agaaacgttt tggccggcag      4440
     atgaatttca ttcggagaat ctagatcaaa atgtaaactt agagcataaa aaatccgttg      4500
     tagaagtata cactgtagta aacaaaactc gaataattga cttatcaaga ttttctttat      4560
     ggacgcgatt gatatctaca acaacgcgga tttatgaagc agtagatatt tggaaaaatc      4620
     aagcacgaac accattacaa cgctatttgt tagcagagga aacgtgcata aaaataagtc      4680
     agttgaattc gttcgaaaaa gagataaacg cgttgaaaaa caaagataaa ttgccaaaag      4740
     atagtcgcat tttaacgtta aacgtgtatc tagacgagtg tgggttgcta cgttctaaca      4800
     gtcgaattat aaaattaaaa gctgtcgaga ttaatacaaa accccttgtt ttagacgcta      4860
     gcgaatcagg cacacaattg ttgatcaaat attaccatgg aaaatattac cacgcgagcc      4920
     ataaaacggc cgagaacgaa ctgcgtcaaa ggtattgggt agtagggttg cgaaacaaat      4980
     taagaagttt agtagcaaaa tgtgcaattt gcagaatgca gcggggacgt ccgagcaatc      5040
     cgataatgtc tgcgcttccc gaatgtagac ttgcttatta tgagcgacca ttcagatact      5100
     gtggcctaga ctatttcgga cctatgactg tgaaaatcgg tagaagaagg gaaaaaaggt      5160
     ggggcgcgat ttttagttgg atgtccactc gcgcagttca tctcgagctt gcgcattccc      5220
     ttagtgcggg ttccgcaatt atggcattaa gacgattcac agcgcgtaga ggaacaccgt      5280
     ctaaaatgta ttgcgacaac gggacgaatt tcagaggaat gagtctagaa ccagctcgtg      5340
     agattcgtga aatcaaccgt gaaaagttac aggaatacgc aaatagaaac aaaattgatt      5400
     ggatttttaa tccaccgacc gcgtcgcaca tgggaggtgc atgggaaaga cttataagat      5460
     cagttaaaac tgcgttagct gtaatattaa aagagcaagc tcctaaagaa gagacattgc      5520
     taacgatact cgctgaggta gaacatgcta taaattcgcg aaccttgact caattatcag      5580
     tagatccgcg cgaccaagaa gccctgactc cgaatcactt ccttctcgga ttctcctcgg      5640
     aacaaatacg cataaataga tctgatgttc aaagtacttg ccctagaaag cagtggcaaa      5700
     tcgcgcaaaa gtttgctgat gctttttgga aaaggtggct aaaagagtat gttcctacat      5760
     tgattccaag gagtaagtgg catgaaaatg acgaatcgat aaaggtaaat gatattgttt      5820
     taattttaga cgataacgtc gaacggaatc aatggagaaa aagcgtagtc acgcgagttt      5880
     tacctggatc tgacggacaa attagaatag cggaagaacg tacagccaat aacattttac      5940
     tcagaccgac tagaaaatta attaaatttg cggcgtagtt aagagtacaa cgttctagac      6000
     ctttttacgg ggggagga                                                    6018
//
ID   BEL1-NVi_LTR repbase;    DNA;    INV; 480 BP.
XX
AC   AAZX01006515;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1-NV;
KW   BEL1-NVi_I; BEL1-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-480
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1164-1164 (2007).
XX
DR   Genome; AAZX01006515; Positions   15740   15261.
XX
SQ   Sequence 480 BP; 142 A; 90 C; 121 G; 127 T; 0 other;
     tgttacggtc tcgagcattg ccaaaaagct gcttgttcgg ttactgggtt tagcctaaaa        60
     taaaaagaaa aatgaatcat atgcagtcac gttgttttgg aatgcgaatt tggctgcgtg       120
     cacgacaatc atggattgtt cggggccgct tttccccttc ctcgatcaaa gatcggaaat       180
     agaagggcac gtggcgagga aacaaaaggt tttctcgcgg acggaaagcc gcgattcaat       240
     tgttaaggga gcgaactacg gttgccgggc aagcggatgt agaaaaacaa aattgtttag       300
     aaaaaaaaga cagggttgct ggagagcggg agatggtgcg agtcagtcga gtgccaagct       360
     tgagcgaaaa agcacttact tgtataacat tcattataat caatcttcct caataaagtt       420
     ttatttcctt atcagtctcg attaataatc tcgtgcgcat tgctcgattt gcgagctaca       480
//
ID   BEL10-I_AG  repbase;    DNA;    INV; 5733 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL10-I_AG is an internal portion of the BEL10_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL10-I_AG; BEL10-LTR_AG; BEL10_AG; Bel clade; PHD domain;
KW   integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5733
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL10_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 27-27 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL10_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL10-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL10-LTR_AG
CC   LTRs. The BEL10-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 7 copies; they less than 1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1746-aa BEL10_AGp Bel-like
CC   protein
CC   (pos. 451 5688).
CC   BEL10_AGp is composed of the PHD (pos. 32-77), protease, reverse
CC   transcriptase and integrase (pos. 1400-1550) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..5688
FT                 /product="BEL10_AGp"
FT                 /translation="MLFCHTTVCRRIVVKMATKKSNYFVENKNGACRLCTE
FT                 PNGDSPFVRCEECDRYFHLACAKLSAVPTAEEEWLCIKCQDIKIQYQQEEK
FT                 KSTPDQAILELAMVLQNNSLEASRHIKKTTLVNLPEFDGKPQDWPHFKKTF
FT                 EDTTIEAGFSKLENLNRLQRFVKGEAEKAVRALLLDPQNVPAIMGRLEEQF
FT                 GRADQVYKELLKDVVKIKVEGQMKIMELSDALDNLVTNIKILGKRSYLNDP
FT                 RLIDELLAKLSIDKQLNWAQHKASLEAANSEITLDQFNDWMRQISKALRSL
FT                 PKRTDRPQNKVNVHKYHNHKPPRNSQQMNIAQNLHTVCRLCKGQHTLPECE
FT                 IFLQKNISDRIAFTTQHHLCFTCLLSSEHVQRNCPLSKVCSVQGCIRRHHP
FT                 LLHEVPQPIYYHYNDVRVYYQIVPITVRNGSVAMKTFAFLDAGSSLTLMEE
FT                 DLANKLGLQGRQDPLTMTWTQNLTVEQDTSRRVQLTIVNDQGKEFLLKEVR
FT                 TVKNLQLPQQTIDTNRLLALYPHLKGIKIKSFTNAYPTILIGLSHSHLIMP
FT                 LDRRMGRPEEPMAIKTKLGWIIFGNEYTQPATRSDHFMVHKNEEIMNRMIQ
FT                 QYFSTEDFGVKVTKPLVPKEIEQANKILEKTLEKKDGYYQVGLLWKPEVAH
FT                 FPNSYPNALKRLVSLEKQLNKNRELQVWAKNTFADYIQKGYLRKLTPSQVA
FT                 IATPKTFYLPHFVVVNRNKPIPKPRLVFDAAAEVNHISLNSQLLSGPDEMA
FT                 SLFGVLLRFREGNICVTGDIQEMFHRVRIREEDQDSQRILWRDCENRCPDV
FT                 YVMQVMTFGATCSPACAQVVKNTNAAAHAETHPLAVDPIVRQHYVDDYLDS
FT                 FFTMEDAIETVRQVIEVHKAADFHIRNFTSNRGELLKTIPQDRVQQKTTSV
FT                 QIEEKGQDYEKILGVHWNPTIDYFGFQVKMNKVTKDRPTMREVLSFVMSVY
FT                 DPLGLISHVTIAGRILMRELHVITKDWDSTIPDELQEKWEECLRVVKSAEK
FT                 IRIPRQLVITLNDPLELHTFVDASENAFAACVYARTVTKEGTVFINLVAGK
FT                 ARVAPINPLSIPRLELQAAVLGVRLTESIRKELRLFVKHITYWSDSEVVLS
FT                 WLKNRRKYAQFVAHRVGEILESSRADQWRWVPSRENPADIATKPYPNDWIW
FT                 VNGPSFLRNNESDWPHKEIVETNEECRVVAVHQHAETAIPVENYSSWPRLL
FT                 KHLTILKKFADFIRNRSAFTRSIQPNDVQLVRNGMYRSAQWEGFPEEMATL
FT                 TKGQPVPKQSPLNKLSPFLDSDGIMRSRGRLENISTLPQSTRTPIILPQKP
FT                 RLVKLLVRNFHERYLHQADNVVIGAIRQEYWIVNLRAVLKNIKKCCQKCIL
FT                 KTAAPVAPFMAPLPEFRAHPYTPPFYNTGVDYFGPIEVQVKRSLEKRWGAI
FT                 FSCMNTRAVHIELAEKLDTDSFMVCLKNFQNRRGKICNMYSDNGKNFVGAE
FT                 RELRELVTEIDKRMGHESALKYEIKWHFNPPSAPHFGGVWERQIQNIKKGL
FT                 RHMFSEWSHRHPTPETLRATLIEIEAMLNSRPLTHIPLENEEDEILTPFHF
FT                 LIGRNGSHIPPVVNETSAANRQQYKLTQHYSKIFWDRWKKEYLPTLIRRNK
FT                 WTNHVEPIKVGDIVVLFDDNAPPGKWIKGRIVKANMAPDGQVRSVEVKVGE
FT                 NILKRPAVRVAVLNVEQKEHLLLHTTSQQHQGTNRIRPLQPNNDNNETKPP
FT                 RKKTKIAPCHWAKQLLENNPPSTSTN"
XX
SQ   Sequence 5733 BP; 1903 A; 1264 C; 1255 G; 1311 T; 0 other;
     ttggtggctc cagagaggag agcctcaccg tagatagtgt catcgcgtcg ttgttagacc        60
     ggagtggacg agccgtgtag ctaccgtgct ccgtgttacc aagtgcgccg tggtcccgag       120
     tgtccagccg caccggaagg gtcgagccca gagtgtgctt ctggaaccaa agcgtccagc       180
     ccatccgtga cgtcgtcaca tcatcatcat cagaccggat tggaagaaag ctaagtccgt       240
     gcttctggcc agagtgtcca gccatccgcg tcattgaagt gcgccgtggt cccgagtgtc       300
     cagccgcatc aatttatgtt atttgtcata cgtccttctg tcattggacc ggattggaaa       360
     aagagctaag tccgtgcttc tggccagagt gtccagccat ccgcgtcgtt aaagtgcgcc       420
     gtggtcccga gtgtccagcc gcatcaattt atgctgtttt gtcatacgac cgtgtgtcgt       480
     agaatcgtcg tgaaaatggc taccaagaag agcaattatt ttgttgagaa caaaaacggt       540
     gcatgtcgcc tctgtaccga accaaacggt gatagtccgt ttgttagatg tgaggaatgc       600
     gatcgatatt ttcacctggc ctgcgccaaa ctatcggcgg taccaaccgc agaagaagaa       660
     tggttgtgca taaaatgcca agatatcaag atacaatatc aacaagaaga aaagaaaagt       720
     acaccagatc aagccatatt agaactcgct atggtattac agaacaatag tttggaagct       780
     agccgccata tcaagaaaac cacattagta aaccttccag aatttgatgg gaaaccacaa       840
     gactggccgc atttcaaaaa gacatttgaa gacacaacaa tagaagcagg ttttagcaag       900
     ctagaaaact tgaatcgatt gcaacgattt gttaagggag aagccgaaaa agcagtacgt       960
     gccttactct tggatccgca gaacgttccg gccatcatgg gtcgtttaga agaacaattt      1020
     ggaagagcgg accaagtgta caaagagctg ttgaaagatg tggtgaaaat aaaggtcgaa      1080
     ggacaaatga aaataatgga gctttctgac gctcttgata accttgttac aaatattaag      1140
     attttaggaa aaagatctta cttgaatgat cctcgactca tcgatgaatt gttggcaaaa      1200
     ctttcgatcg ataaacaact gaattgggca cagcacaaag ccagtctaga ggcagcaaat      1260
     tctgagataa cgcttgacca gttcaacgat tggatgcgcc aaatatcaaa ggcattgcga      1320
     agtctgccaa aaagaacaga tcgaccacag aacaaagtaa atgttcacaa atatcacaat      1380
     cacaaaccac cacgaaattc ccagcaaatg aacattgctc aaaacttgca cacagtttgt      1440
     cgcttgtgca aaggacaaca tacgttgcca gagtgtgaaa tctttttaca gaaaaacatt      1500
     agtgaccgaa ttgcattcac cacacaacac catctgtgtt tcacatgtct cctctccagc      1560
     gagcatgtcc aaagaaactg cccattgtcc aaagtatgta gtgtgcaggg atgtattcgg      1620
     cggcatcatc ctctgttaca tgaagtgccc cagccaatat attatcacta taacgacgta      1680
     cgtgtctact accagatcgt tccgataacc gtacgcaatg ggtcagtggc tatgaaaacg      1740
     tttgctttct tggacgctgg atcatcacta acactcatgg aggaagattt ggcaaacaag      1800
     ttaggtttac aaggccggca agatccatta acaatgacgt ggacccaaaa tctaacggta      1860
     gaacaagaca ccagtcgtcg agtgcaactt acgattgtaa atgatcaagg aaaagaattc      1920
     ctattgaaag aggtgcgaac cgttaaaaat ctacaactac cacaacaaac aatagacaca      1980
     aatagattgc ttgctcttta cccacacctg aaaggcatta aaataaaatc gtttacaaac      2040
     gcttacccta ccatcctcat aggcttaagt cacagccacc ttatcatgcc attagaccgc      2100
     agaatgggcc gtccagaaga accgatggcc atcaaaacaa aactcggatg gataatattc      2160
     ggaaatgagt acacacaacc ggcaacaaga tcggatcatt tcatggtaca caaaaacgag      2220
     gaaataatga atagaatgat ccaacaatac ttcagtacgg aagattttgg agtgaaagtg      2280
     acaaaacccc ttgtgcccaa agagatagag caagcgaata aaattctaga aaagacgcta      2340
     gagaaaaagg atggatatta tcaagtggga ctgttgtgga aaccagaagt ggcacacttc      2400
     ccaaatagct atccaaacgc actgaaacgc ctagtaagtt tggaaaagca gttgaataag      2460
     aatagagagc tgcaagtctg ggcaaagaac acatttgcag attacataca gaagggttat      2520
     ctgagaaagt tgacgccaag ccaggttgct attgcaacac caaaaacttt ctatctaccg      2580
     catttcgttg tagtcaaccg aaacaaaccg ataccgaaac cacgattggt gtttgacgcg      2640
     gctgctgaag taaatcacat ttcgctgaac tcccaattac tatctggccc tgacgaaatg      2700
     gcttcacttt tcggtgtctt gctacgtttt cgagaaggca acatctgcgt cacaggggac      2760
     atccaagaga tgttccaccg agtaagaata cgggaagaag atcaggactc tcagcgtatt      2820
     ctgtggcgag attgtgaaaa ccggtgtccc gatgtgtacg tcatgcaagt catgacattt      2880
     ggcgcgactt gttcgcctgc atgcgcacaa gtagtaaaga ataccaacgc agctgcccac      2940
     gccgaaacac accctctggc agtagaccca atagttcgac aacattatgt tgacgactat      3000
     ctcgatagtt ttttcacaat ggaagatgca attgaaacag taagacaagt aattgaggta      3060
     cacaaagctg ctgattttca cataagaaat tttacctcaa accgggggga gttactgaaa      3120
     acaattcctc aagatcgtgt acaacaaaaa acaacttcag tacaaatcga agaaaagggc      3180
     caagactacg agaagatact tggtgttcat tggaacccaa cgatcgatta ttttgggttt      3240
     caagtcaaaa tgaacaaagt aacaaaagac aggccaacaa tgagagaagt tcttagtttt      3300
     gtcatgagtg tttacgatcc gctgggctta ataagccacg taacaatagc tggcagaatt      3360
     ttaatgagag aacttcatgt tataacgaag gattgggact ccaccattcc agatgaatta      3420
     caagagaaat gggaagaatg tctacgcgta gtaaagagtg ccgaaaaaat acgaattccg      3480
     aggcaattgg taataacctt gaatgatccg ctagaattgc atactttcgt agacgcttct      3540
     gagaacgcat ttgctgcttg cgtttacgcc cgcactgtaa ctaaggaagg aacagttttt      3600
     attaatcttg tggccggaaa ggcacgcgtg gcgccaatta atccattgtc cattcctagg      3660
     ctggagttac aggctgcggt tctgggtgta cgtctaaccg aaagtataag aaaagaactt      3720
     cgcctattcg taaaacacat aacatactgg agtgattcgg aagtagtatt gagttggctc      3780
     aaaaatcgtc gtaaatacgc acaatttgtt gcacatcgtg tgggcgaaat tttagaatca      3840
     tctcgtgccg accaatggag atgggttcca tctcgagaaa atccagcaga cattgcaaca      3900
     aaaccatatc caaatgattg gatttgggta aatggacctt cgttcttaag aaacaacgaa      3960
     tcagattggc cacacaaaga gatcgtagaa acgaatgaag aatgccgcgt agtagctgta      4020
     caccaacacg cagaaacagc tataccagtc gagaattatt cttcgtggcc tagattgtta      4080
     aaacatctaa caattctgaa aaagtttgcc gattttatta gaaatcgttc agcatttaca      4140
     cgttccattc agcctaatga cgtccaatta gtccgaaatg gaatgtatcg cagtgctcaa      4200
     tgggaaggat ttcccgaaga aatggcgact ctcaccaaag ggcaaccagt accaaagcaa      4260
     agccctttaa acaagctatc accattttta gactccgatg gcatcatgcg ttcccgtgga      4320
     agattggaaa acatcagcac gcttccccaa agtacacgca cgccaatcat actgccacag      4380
     aaaccaagat tggtaaaatt gttagtgaga aatttccatg aacgttattt gcatcaggcc      4440
     gacaacgtag ttatcggcgc aattcgacaa gaatattgga tagtgaattt acgagcagtg      4500
     ctaaagaaca taaagaagtg ttgccaaaag tgcattctta aaaccgctgc accagtagcc      4560
     ccctttatgg cacctctccc agaattcaga gctcacccat acacaccacc gttttataat      4620
     acaggggtcg actattttgg acctatcgaa gtacaagtaa aaaggtcgtt ggaaaaacga      4680
     tggggtgcta tcttctcgtg catgaatacc agagcagttc atatagaact agccgagaag      4740
     ctagacacag acagttttat ggtatgcctg aagaatttcc aaaatcgccg aggaaaaata      4800
     tgcaacatgt atagcgataa cggaaaaaac tttgttggtg cggagcgcga attaagagaa      4860
     ttagtaacag aaatcgacaa gcgcatggga catgaatcgg cgctcaagta cgaaataaaa      4920
     tggcacttca atcccccttc cgccccccat tttggtggag tatgggagcg gcaaatacaa      4980
     aacatcaaaa aaggattgcg gcacatgttt tccgaatgga gtcaccgaca cccgactcca      5040
     gagacacttc gtgccacttt aattgaaatc gaggcaatgc ttaattcccg gcccttaaca      5100
     cacataccgc tggaaaatga agaagacgaa atactcacac catttcattt tcttattgga      5160
     cgaaatggca gccatatacc accagtagtg aacgaaacct cggcagcaaa caggcaacag      5220
     tacaaactca cacagcatta ctcaaagata ttctgggacc gttggaaaaa agaatatctt      5280
     ccaacactaa tacgccgaaa taagtggact aaccacgtag aacccataaa ggtgggagac      5340
     atagtcgtgc tgttcgatga caacgcacct ccaggaaagt ggatcaaagg aagaattgtg      5400
     aaagcgaata tggccccgga tgggcaagta cgatcagtgg aagtaaaagt gggagaaaac      5460
     atattaaaac ggccagctgt ccgagttgcc gtattaaatg tagagcaaaa ggaacatttg      5520
     cttctccaca caacatctca gcaacaccag ggcacaaatc gaataagacc gcttcagcct      5580
     aacaacgaca acaatgaaac gaagcctcct cgtaagaaaa caaagatcgc cccatgtcat      5640
     tgggcaaaac agttattgga aaataaccca ccaagcactt cgaccaacta agcaagaagc      5700
     gtaatccccg cctgtgaatt acgtggggga gaa                                   5733
//
ID   BEL10-LTR_AG repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL10-LTR_AG is a long terminal repeat of the BEL10_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL10-I_AG; BEL10-LTR_AG; BEL10_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-551
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL10_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 28-28 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL10-LTR_AG flank an internal portion of BEL10_AG (deposited as
CC   BEL10-I_AG).
XX
SQ   Sequence 551 BP; 163 A; 127 C; 156 G; 105 T; 0 other;
     tgttgcgtgc gaagtgcatg cagaataaaa aataaaaagt ggaaagacac aacatcggtg        60
     aatttccacg aaacgccagc cgtacccccc acgatgaacg tcgctaccag cacgcgcagc       120
     cccggtaccg tctacacaaa ggattgctcg atggattgat cgatgcggaa tttctggaat       180
     cgccagtgca aacagatgtc gccgggagtg acaatggaaa ccgggagcgc gatgggagtt       240
     ggggacaaac gggaatggga gtgggaggaa aggcgtagaa ttttgggtta gtatcgtgca       300
     gaaaaattgt gaaaattttg gtatataaag gcggctcaag ctggagccaa atcagattcg       360
     aacgataagc caaagtgtta agagcttcat ttcagaacat ccgaaataat ccgaatctca       420
     aggaacgatc cccctttctg ttgcatagac tcccgaggca gcgaggagca ctagctgaaa       480
     ggcttggaga attccccgtt gtagccgtag gagccggaac cttcgcccgg cggagcccct       540
     cggccgcaac a                                                            551
//
ID   BEL11-I_AG  repbase;    DNA;    INV; 5296 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL11-I_AG is an internal portion of the BEL11_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL11-I_AG; BEL11-LTR_AG; BEL11_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5296
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL11_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 29-29 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL11_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL11-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL11-LTR_AG
CC   LTRs. The BEL11-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 10 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1710-aa BEL11_AGp Bel-like
CC   protein
CC   (pos. 137-5266).
CC   BEL11_AGp is composed of the peptidase A16 (pos. 128-300), RING
CC   Zn-finger (pos. 317-388), reverse transcriptase (pos. 765-888)
CC   and
CC   integrase (pos. 1418-1577) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           137..5266
FT                 /product="BEL11_AGp"
FT                 /translation="MSKQDKLRYKELKRHQYIDSINRVKEFLKTFTSEQQN
FT                 QVSTRLDRLEKIWESFETVQEDIEDLEISEEGVATNARIRAEMEETYLYAK
FT                 AQLRSMLPIPAAAEVVSVAANAASSSSSRVKLPLIALPEFAGNFDAWLTFH
FT                 DTYVSLIHSSTDITAIEKFHYLRASLKEEAANLIQSISVTSENYDLAWSTI
FT                 VKRYSNPIILRKKHIRSLISLPKMKETGAVALNRLVDDFRRHVKILEQLKE
FT                 PVKSFSSILIELMADKLDDETLRVWEEAHADEDPTFTDMMAFLEKRIRVLE
FT                 TLAIEKCGAVPKKPIKTKVSLHAATTHTNNVPVCVMCKKNGHSIASCNVFK
FT                 GTNTQERMRVVSEKRLCRNCLKAGHLAHACASKYNCQQCSQRHHTLLHAHE
FT                 ENSSVLVGETSSSSTMALASSKKSAVNAILSTVVLVVVDAYGKEHLARALL
FT                 DNGSQPNAISEHLCQLLRLPRKPASVSIAGVDSTTTNAKHIVCTEVRSRIY
FT                 HYRQAMNFLVLKKVTQNIPSTSFSTAAVGVPSNYVLADPDFGTARRVDMII
FT                 GAAYFYSLLRGGQVHLPNQRNVLIDTVFGWLVAGDTPTFHESQSQTTISCH
FT                 MMEATDKLQEQLERFWKVEELAITSLSPVEQQCEQYFKQTTNRDHTGRYVV
FT                 RMPKHHDYAQMLGDSKAAAQKRFRLLEQRLAKDKHLKQQYDDFMREYVTLG
FT                 HMFPVPVEEDSMAAVHYLPHHPVVKESSTTTKVRVVFDGSAKTTTGHSLND
FT                 VLHVGPVVQDELLSLVVRFRKYKVAVIADIEKMYRQVSMHPDDRRLQRIFW
FT                 RFQETEVVQTFELATVTYGLAPSSFLATRTLLQLAEDEGAPYPLATEAVKK
FT                 NLYVDDLISGAESIEQAIQLRDELTSLMSKGGFRFRKWCSNELSVLDGLTP
FT                 DLLGTTASHEFEATANVKTLGICWEPPNDVFRFTIAIPDVRPYTKRTVLST
FT                 IAQLYDPLGLLSPIIVQAKILLQELWANKLGWDDELPRQLCDKWEEFCEQL
FT                 PMLARFKIPRFALTPNYNYVELHCFADASEAAYGACAYLRSQSIDGTTQVT
FT                 LLASKSRVAPLKPLTIPRLELCAALLAARLQQKLISAIDMAVNETHMWSDS
FT                 TITLQWLAAPPRTWKTFIANRVGEIQAATNGCIWHHVPGIENPADMLSRGV
FT                 SAELLLESNMWMHGPDWLMNDSSCWPSKSYGQQHFTDDELERKGNVVLTAQ
FT                 VVEPDPLLLRYSSFRTLVHVTAYCMRFCHIARGKEQRETSNLSVDEIQNAK
FT                 IVLVKMVQRQVFPDELRQLRKKQKLAGGSPLKLLHPFIDKDGVIRVGGRLG
FT                 HADLPFCVKHPIVIPGYHPFTQLLLRQQHEKVMHGGITSTLSAIREEFWPL
FT                 NGRRAVRSTIRACYRCNRANPVPIQQPMGQLPLSRVTANEAFVCTGVDYCG
FT                 PIMLKPVHRKAAPQKAYLCIFVCMSTKAVHLELVGDLSTSGFLKALDRFIF
FT                 RRNKPNHIYSDNGTNFVGAKNALHQVYQMLHDEAQNRQINNYLAEEGIEWH
FT                 LIPPRAPNFGGLWEAAVKVAKKLLVRQLGVSLLSYEDLATVLIKIEGCMNS
FT                 RPLTPLSNDPNDLSALTPSHFLIKGMMRPPPETDIRDVPTNRLDQYQRLQK
FT                 YAQHFWQRWRTEYLHELAQQQRRNPPEQQVSIGDIVIIKDEQLPPARWPLA
FT                 RIVEVHPGQDGIVRVVTLKTASGVLKRPSSKICLLECSREF"
XX
SQ   Sequence 5296 BP; 1460 A; 1239 C; 1299 G; 1298 T; 0 other;
     ttttggtgcg tagtgaccag gattttgata aatccttcgg tttttgtgaa aaccggcgta        60
     cagaagcgtt tgttcataaa gcagtgctgc ggcactcgat ctgtattagt gtttgtgtgt       120
     gtgagccttt tgcaaaatgt cgaagcagga caagttgcgg tacaaggagc tcaagcggca       180
     ccaatacatt gactccatca atcgtgtgaa agagttctta aaaacgttca caagtgaaca       240
     acaaaatcaa gtgtcgacgc gactcgatcg tttggaaaag atttgggaat cttttgaaac       300
     agtgcaagaa gacatcgaag atttggaaat ctccgaggaa ggcgttgcaa ctaatgcgcg       360
     tattagagca gaaatggagg aaacgtattt gtacgcaaag gcgcaattgc gtagtatgtt       420
     gcccattccg gcagccgctg aagttgtgtc tgttgctgca aatgctgctt catcttcttc       480
     ttcaagagtg aagctcccat tgatcgcact gccagagttc gcaggaaatt tcgatgcgtg       540
     gttaacgttc cacgacacat acgtctcact catacactca tcgacggaca taacggcaat       600
     cgaaaaattc cactaccttc gagcttcact caaagaagaa gctgcgaatt taatacaatc       660
     catttcggtt acgagtgaga attatgattt ggcatggagt acgatcgtca aacgttattc       720
     caacccaatc attttgcgta agaagcatat tcgatcgctc atatcgcttc ctaagatgaa       780
     agaaacggga gcagtggcgc tcaaccgttt ggttgacgat tttcgacggc atgtcaaaat       840
     cctagaacaa ttgaaagaac ccgtgaaatc gttcagttca attctcatcg agttgatggc       900
     ggataagctg gatgatgaaa cactccgtgt gtgggaagaa gcccatgccg atgaagatcc       960
     tacatttacg gacatgatgg cgtttttgga aaaacgtata agagtgttgg aaacactggc      1020
     aatagagaag tgtggtgcag ttcccaaaaa accaataaag acaaaagtat cgttgcatgc      1080
     agctacaact cataccaaca acgtaccagt gtgtgtgatg tgcaaaaaga acgggcacag      1140
     tatagcgtcg tgcaatgtgt tcaaaggcac taatacacaa gaacgcatga gagtggtgag      1200
     tgagaaaagg ctgtgcagaa attgcttgaa agcaggacat ttggcccatg cgtgtgcgtc      1260
     caaatacaat tgccagcagt gttctcagcg tcaccacaca ctacttcatg ctcacgaaga      1320
     aaacagcagt gtattagtgg gtgagacttc tagctcttca acaatggcgt tggcatcgtc      1380
     gaagaaatcc gccgttaacg ctatactctc tacagtggta ttggttgttg tcgatgcata      1440
     cggcaaagaa cacttagcgc gagcattgct ggacaacgga tcgcagccga acgcgatcag      1500
     tgaacatctt tgtcagcttt tacgactacc acgaaagccc gctagcgttt caattgctgg      1560
     tgtcgacagc actaccacca atgcaaagca catagtatgt acagaagtgc gatctcggat      1620
     ttaccactac cgacaagcaa tgaatttcct tgtgttgaag aaagtaacgc agaacattcc      1680
     ttcaacgtcg ttttctactg ctgccgtcgg cgttccttcg aactacgttc tggccgatcc      1740
     agatttcggg accgcgcggc gcgtggatat gatcatcggt gcagcatatt tctattcgtt      1800
     gctgcgtggt ggacaagtgc atttgccaaa ccagcgaaac gttctcatcg acacggtgtt      1860
     tggctggctc gtagcaggag atacaccgac ctttcatgaa tcgcaatcgc aaacaacaat      1920
     tagttgccac atgatggagg caaccgacaa actacaagaa cagctggagc gattttggaa      1980
     ggtcgaagag cttgctataa catcattgtc tcctgttgaa caacagtgcg agcagtactt      2040
     caagcagacg acgaatcgag atcacaccgg cagatacgtc gttcgcatgc cgaaacacca      2100
     cgactacgct cagatgcttg gcgattcgaa ggctgcagcc cagaagcgct ttcggttgtt      2160
     ggagcagagg ctggctaaag acaagcatct gaagcagcag tacgatgact tcatgcgaga      2220
     atacgtgacg ctgggtcaca tgtttcctgt gccggttgaa gaggacagca tggctgcggt      2280
     tcactacttg ccgcatcatc cggtggtgaa agagtccagc acgacgacca aggtgcgtgt      2340
     ggttttcgac ggctcggcga agacaaccac ggggcattct ctaaacgatg tcttgcatgt      2400
     aggaccagtc gtgcaagatg agctgctgtc tctcgtcgtg cgattccgca agtataaggt      2460
     ggcggtgatc gccgacatcg agaaaatgta tcgccaggtg agtatgcatc ccgatgaccg      2520
     acgtttacaa cgtatttttt ggcgctttca ggaaacagaa gttgtgcaaa cttttgagtt      2580
     ggcaacggtg acgtatggtc tggctccatc gtcattccta gcaacacgta cgctacttca      2640
     actagctgag gatgaaggcg ctccttaccc tttggcaact gaagccgtaa agaagaactt      2700
     gtacgtggac gatctgatct ccggcgcaga aagcattgag caagcaattc aacttcgtga      2760
     cgaactgacc agtctcatga gtaagggagg tttcaggttc cgaaaatggt gctcaaacga      2820
     gttgagtgtg cttgatgggt tgacacctga tctgcttgga acaacagcat cccatgaatt      2880
     cgaagcaacc gcaaatgtca agacgcttgg catatgttgg gaaccaccaa acgatgtatt      2940
     ccgcttcacg attgctatcc ctgatgtacg accctacacg aaacgtacag tgctatctac      3000
     gattgcccaa ctgtacgatc cgcttggctt gctatcgcct atcatcgtgc aagcaaaaat      3060
     cctcttacag gaactttggg caaacaaact cggttgggat gacgaattgc cgcggcaatt      3120
     gtgtgacaaa tgggaagagt tttgcgaaca gctccccatg ctagctcgtt tcaagatccc      3180
     gagatttgct ttgacaccca actataacta tgtagagctg cattgttttg cagacgcatc      3240
     agaagcagct tatggtgcgt gtgcctacct gagatcgcaa agcatcgacg gcacaaccca      3300
     agtaacgctg ctagcttcta aatcgagagt ggctcctctc aaaccactta ccatccctag      3360
     actggaacta tgcgcagcct tgctagctgc cagattacag cagaaactga tatcagccat      3420
     tgacatggca gtaaacgaaa cacatatgtg gtccgattca accatcacgc tgcaatggct      3480
     tgcagcacca cctagaacgt ggaaaacttt catcgcaaac cgagtaggag agatacaagc      3540
     tgctaccaat ggatgcattt ggcatcatgt gccagggatc gagaaccctg ccgacatgct      3600
     atccagaggt gtttctgcgg aattgctttt ggaaagcaac atgtggatgc atggaccaga      3660
     ttggctgatg aacgatagct cgtgctggcc cagcaaatcg tatggacaac agcacttcac      3720
     tgatgatgag ctggaaagaa agggtaacgt tgtgttaact gcccaagtag tcgagcccga      3780
     cccattgctc ctacgatact cctcattcag aacgttggtt catgtaactg catattgcat      3840
     gcgattttgc cacattgcgc gtggtaaaga acaacgcgaa acgagcaatc tctctgtgga      3900
     tgagattcaa aatgctaaaa tcgttttagt aaagatggta cagcgacaag tatttcccga      3960
     tgaactacga caactgcgta agaaacaaaa gcttgctggt ggatccccac tcaagctact      4020
     ccatccattc attgacaagg atggtgtcat acgtgttggt ggcagacttg gacatgccga      4080
     tttgccattc tgtgtgaagc atccgatcgt cattcctggg tatcatccat ttacccaatt      4140
     gctgttgagg cagcaacatg agaaggtgat gcatggtggc atcacatcaa cactttcagc      4200
     cattcgcgag gagttttggc cattgaatgg caggagagcg gttcgatcta ccatccgagc      4260
     atgttatcgc tgcaaccgag ccaatcctgt tccaattcag caaccgatgg gacagctacc      4320
     gctttctcga gtcactgcaa acgaagcatt tgtctgtaca ggtgtggatt actgtgggcc      4380
     gataatgctg aagcctgttc atcgcaaagc agctcctcaa aaggcgtacc tatgcatttt      4440
     tgtatgcatg agcaccaaag cagtccattt ggagcttgtg ggtgacctaa gtacatcagg      4500
     gttcctgaag gctttagacc gtttcatctt ccgacgaaac aagccgaacc atatctattc      4560
     ggataatggt acaaatttcg tcggcgcaaa gaacgcactt caccaagtct accagatgct      4620
     gcatgacgaa gctcaaaacc gtcaaatcaa taactatcta gcagaagaag gaattgaatg      4680
     gcaccttatt ccacctcgtg caccaaactt cggtgggctt tgggaagccg ccgtgaaggt      4740
     ggccaagaag cttttggtca ggcagttagg tgtctcgcta ctatcttatg aggatctggc      4800
     aacagtgctg atcaaaatcg aaggctgcat gaattctcgt ccgttgacgc cgctttcgaa      4860
     tgaccctaac gatttgtcag ctttaacacc gagtcatttt ctcatcaagg gaatgatgcg      4920
     tccacctcca gaaactgaca tacgggatgt cccgaccaat cgactcgacc agtatcagcg      4980
     gttgcagaag tacgctcaac atttctggca gcgctggcgt acagagtacc ttcatgagct      5040
     tgctcagcaa cagcgacgta atccaccaga acaacaagtc tctatcggag acatcgtcat      5100
     tatcaaggat gaacagctcc cacccgctcg ttggcccttg gctcggatcg tggaagtaca      5160
     ccctgggcag gatgggattg tgcgtgttgt taccttaaaa actgcctctg gggtattgaa      5220
     gagaccttcg tctaagatat gtttgttaga atgttcacga gaattttgaa aacttagttg      5280
     ttcaaggggg ccggta                                                      5296
//
ID   BEL11-LTR_AG repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL11-LTR_AG is a long terminal repeat of the BEL11_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL11-I_AG; BEL11-LTR_AG; BEL11_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-261
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL11_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 30-30 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL11-LTR_AG flank an internal portion of BEL11_AG (deposited as
CC   BEL11-I_AG).
XX
SQ   Sequence 261 BP; 80 A; 49 C; 71 G; 61 T; 0 other;
     tgtttggtac cgcatacggt aggatgtact ggtgaggaga agtgtagagg aacgagaatt        60
     ttcggcgtaa gtgtgtgcgt gtttttgcac acgctgcttg agctgggtgc gcggcgctca       120
     gcgatcagtc gcgaatcgat actgaataaa gacacacgtg aactgtacga acaatataaa       180
     ttcctccgtg taaggcaaat attgatcaaa taaaaatatc acaacgtagg gcaaacttgc       240
     taacgatcac gggacagaac a                                                 261
//
ID   BEL12-I_AG  repbase;    DNA;    INV; 5887 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL12-I_AG is an internal portion of the BEL12_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL12-I_AG; BEL12-LTR_AG; BEL12_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL12-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5887
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL12_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 31-31 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL12_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL12-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL12-LTR_AG
CC   LTRs. The BEL12-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 20 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1726-aa BEL12_AGp Bel-like
CC   protein
CC   (pos. 582-5759).
CC   BEL12_AGp is composed of the peptidase A16 (pos. 130-250), RING
CC   Zn-finger (pos. 358-410), reverse transcriptase (pos. 700-900)
CC   and
CC   integrase (pos. 1450-1600) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           582..5759
FT                 /product="BEL12_AGp"
FT                 /translation="MPAADKRVKMFNLKRVEIMNTLQDFEEFTKSFDATID
FT                 AYQIPSRLEQLEELVSEFTELRKAFNETVDDSEAFDIMQKDRREFNKRSHE
FT                 VRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLPSFDGEITK
FT                 WLTFKDRFSSMVHDSTEMPEVLKLQYLLSALKGDAAHQFEHMQITADNYYV
FT                 TWEALLKRYDNSKVLKREYFKAFYSLEKMKTDSTEELARIVNEANRLVRGL
FT                 ERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFKTDEFTNLVEFLEQ
FT                 RVNILKSSAQNICNQYSANSIMVTGRQARRDGRNVALPVQQTNNTFKGYLK
FT                 CPLCNEQHPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTY
FT                 VCQQCKRKHHSKLCKIGRLSEVEVVPSTSRLTATAQANCSKKTVILSTAQI
FT                 IILDVNDQPYKVRALLDNGSQLNFITERVAQELRLKRARVSEQIAGVGGAI
FT                 MRVAGSVVGTIRSLTTEYTTCLEFLILPKIATDLPSETMDVRGWKLPKDVR
FT                 LADPTFHERGSIDMLIGADTFVEMIKAKKIKLDHELPTLLETELGWIVSGA
FT                 YKHNNLNQSMACTIVSQGGENDIASLMNTFFNIEEVQDQNLWNVEERECED
FT                 HFQATTRRDENGRYVVRLPLKAERELGESKEVALRRLIGLERRFEREPKVK
FT                 EAYEAFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDSTTTKCRVVFDG
FT                 SCKTSNGRSLNDILKVGPTIQQDTTDILLRWRRRAIAVVGDVEKMYRQVWV
FT                 HEEDRKFQRILWRSHSSEKIKTYELNTITYGTASAPFLAIRTLNQVLEDNK
FT                 EKYPLAASRINDFYVDDFISGADSENEAKQLCEETKAALAMGGFPLRKWAS
FT                 NCPHILPSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKISEPET
FT                 CEIYTKRSIIRTIAKIYDPLGIVDTVKAKAKQFMQRVWSLKKENGDSYGWD
FT                 EEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVGARNIQIHGFCDASEEGY
FT                 GACVYVRSTNGEEIVSRLFVSKSKVTPLATKHTIARLELCAAHLLGKLLVK
FT                 LKRATEDPYETFCWTDSSTVIYWLKSSPSRWKTFVANRVSQIQNATKEFEW
FT                 RHVPGIHNPADAVSRGRNPAEVVEDKLWWHGPDWLVKDPEHWPKNIESGNT
FT                 CETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCHRFFDRK
FT                 RIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQVVRKSPLRVI
FT                 RPILDKDNVMRVGGRLSNADIKDEQKHPVIIPGKHRIAELIADKYHKILRH
FT                 AGAQLMINTMQLRFWIVGARNVAKRTVFNCVKCTRCRPKLIQQPMADLPEQ
FT                 RVRQARPFSISGVDYAGPIMVKGTHRRAVPTKGYISIFVCFVTKAVHIELV
FT                 SNLTSSAFLAALRRFVARRGHVTELHSDNGTNFRGANNKLRELYKLLNSDT
FT                 HQDEVVGWCAERDMKWKFTPPAAPHFGGLWEAAVKSMKFHLKRVLGTGHLT
FT                 FEDLSTLLAEIEACLNSRPITAISEDPNDMEALTPGHFLVGNHLQTVADVD
FT                 IADVPTNRLNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKNAISIEPGR
FT                 LVILQEDNVAVSKWPMARVVDLHPGKDGVTRVVTLKCANGKEIRRPIHRIA
FT                 PLPIES"
XX
SQ   Sequence 5887 BP; 1982 A; 987 C; 1423 G; 1495 T; 0 other;
     tttggtcctt cgaaccggat ccgaattacg gatattcttt gctagttttt tgtggtttat        60
     gctatttggt taccgagcgc caagtgggag tgcaaagaaa tattggattt cttagcagaa       120
     cggtgtgttc tccactccat tcgtgttgtt gctactgctg caggagccgg acactcatcg       180
     ttggtttgtg tgtgtgagag agagaggacg tgaagccacg aaaggagctg cgtatctgtg       240
     ggctgtcggt aaacagcaaa agacgaactg tgcgacgacg aaaggtgcga agttgtaata       300
     cggtgaatag ctgaatttag tgcgtgcgtg aactttccat taataacata tttgtggata       360
     attagtgtca gcgcagaaca ttttcgaacg cgtgagtgtc gttcaaccgt agtagtggag       420
     tgggtgtgcg tgagtgacta tcctagcgcc atacttggca cccaaagctg cgcgcgtatt       480
     agttcaggtg tcgacaactt ccaggggtac ggaactcatt gctgtgcgtt ttattaaaaa       540
     ttgtgttaag aagtgcctaa agaacaatta ttgggagcaa aatgccagca gcagataaac       600
     gagtgaaaat gttcaattta aagagggtag aaattatgaa cactttgcaa gatttcgaag       660
     agtttacgaa atcctttgat gcaaccatcg atgcatatca gatacctagt cggttggaac       720
     agttagaaga gttggttagt gagttcacgg aattacgtaa agcattcaac gaaacggtag       780
     atgattcgga agcgttcgat atcatgcaaa aagatcggcg tgaatttaac aaacggtctc       840
     acgaagtaag ggcattttta ttaaaaaata gttcccattc tggggcgtcg agtgggttga       900
     acactacaca ggttaacaca actattagtg caggaactca aaatcatctg cgccttccta       960
     aggttgacct tccaagcttt gatggtgaaa taacaaaatg gcttacgttc aaagacagat      1020
     tttcgtctat ggtgcatgac tcgacagaaa tgcctgaagt gttaaaattg caatatttat      1080
     tatcggcgct taagggtgat gctgcgcatc aatttgaaca catgcaaata acggccgata      1140
     attattatgt gacatgggaa gctttgttaa aacgttatga taattctaag gtgttaaaaa      1200
     gggaatattt caaggcattt tattctctag aaaaaatgaa aaccgactcg acggaagaat      1260
     tggcacgtat cgtgaacgaa gcaaatagat tagtcagagg gttagaacgt ttgaacgagc      1320
     ctgtcgacaa gtgggacact ccgttaacaa gtttattgtt ttacaaattg gacagtaaaa      1380
     ctttagtggc gtgggagcag tactcggtgg atttcaaaac agatgaattc acaaatttag      1440
     tggaattttt ggaacagcga gtgaacattt taaagagctc tgcgcaaaat atttgcaatc      1500
     aatattcggc taattcgatc atggtgaccg gcaggcaggc gagaagagat ggtaggaatg      1560
     tggcattacc agtacagcaa acgaacaata catttaaagg gtatctcaag tgtccactgt      1620
     gcaacgaaca gcatccgttg catgtgtgtg agagattcga aagagcgtca gtgataaatc      1680
     gagaggagat agtaagaaaa catggcttat gttttaattg cttgcgaaag ggacactcag      1740
     cacgtgagtg tagatcgacg tatgtgtgcc agcagtgtaa aagaaagcac cattcgaaac      1800
     tgtgtaagat aggaagatta tctgaagtgg aagtggttcc gtcaacgtca agattaactg      1860
     ctacggctca agcaaattgt tcgaagaaaa cagttatatt gtctaccgcg caaattataa      1920
     ttctagatgt taacgatcag ccatacaaag tgagagcatt actcgataac ggctctcaat      1980
     taaatttcat cacggagaga gtggcacaag aactcagatt gaagagagcc cgcgtgagtg      2040
     aacagatagc tggtgtgggt ggagctatta tgagagttgc aggatcagtt gtgggtacca      2100
     ttcgatcact caccactgag tacacaacat gcttagaatt tttaattttg ccaaaaattg      2160
     ctaccgattt accatccgaa acaatggacg tacgaggttg gaagttacca aaagatgttc      2220
     gattagcgga ccctacattc catgaaaggg gctcaataga tatgttgata ggggcagaca      2280
     cctttgttga aatgataaag gcaaaaaaga taaagcttga tcatgagtta ccaacactac      2340
     ttgaaacgga attaggttgg attgtgagtg gtgcatataa gcataataat ttaaatcaat      2400
     caatggcatg cacaattgtt agtcaagggg gagaaaacga catagcttct ttgatgaaca      2460
     cattttttaa tatcgaagaa gttcaagatc agaatttgtg gaacgttgag gaacgagaat      2520
     gcgaagatca ttttcaagca acaacaaggc gtgatgagaa tggaagatac gtggtgcgat      2580
     taccactcaa ggcggagagg gaattgggag agtccaagga agtagcctta cggcggctga      2640
     ttggacttga gagaagattt gagagggaac cgaaggtgaa ggaagcatat gaagcattta      2700
     tgcaggaata tatcactttg gggcacatga gtgtcagaga aaatgaaaat agtagtgacg      2760
     gttactatat gccgcaccac gctgttttca agcaagatag caccacgaca aagtgtcgtg      2820
     tagtttttga tggatcgtgc aaaacgtcaa atggtcgatc tctcaatgat atattaaaag      2880
     taggtccaac aatacagcaa gacactacgg atattttatt aagatggcga cgtagagcca      2940
     tagcagtggt cggtgatgtt gaaaaaatgt accgacaagt gtgggttcat gaggaggatc      3000
     gaaagttcca acgaatactt tggagatcac attcaagcga aaaaataaaa acatatgagc      3060
     ttaatacaat aacgtacgga acggcatcag cgccatttct tgctatacga accctaaatc      3120
     aggtgctaga agacaataag gaaaaatacc cactagcagc atcgcgtata aatgactttt      3180
     acgtggatga ttttatttct ggtgcggatt cagagaatga agcaaaacaa ttgtgcgaag      3240
     aaaccaaggc agcgttagca atgggtgggt ttcctttacg caaatgggct tctaattgtc      3300
     cccatatatt accatctgaa accgaaattg ataatataca aagggtaatt gaattgaagt      3360
     caagagaggg tgcagtatca acattaggac ttgtgtggaa tccgatctta gacactctag      3420
     gtgtaaaaat tagtgaacca gaaacttgtg agatatatac aaaaagatcg attataagaa      3480
     caatcgcaaa aatctatgat ccattgggga ttgtggatac agttaaagca aaagcaaaac      3540
     aattcatgca aagagtatgg tcattaaaaa aagaaaatgg tgactcatac gggtgggatg      3600
     aagaaattcc acagcaaatg agacaagagt gggaagtgtt tgagaggcag ttaacacatt      3660
     tacaagaagt acaagtaccg agatgcgtaa cgatagtagg agcacgtaat attcaaatac      3720
     acggattttg tgatgcttct gaagagggtt atggagcttg cgtatatgtg agaagcacga      3780
     atggagagga aatagtttcg cgattatttg tatcgaaatc aaaggtcacc ccattagcta      3840
     caaaacacac aatagctaga ttagaactat gcgcagctca tttattagga aagctattgg      3900
     tgaaactcaa aagggccaca gaagatccat acgaaacatt ttgttggaca gactctagca      3960
     cagtaattta ttggttgaaa tcgtctccaa gtcgttggaa aacattcgtg gcgaatagag      4020
     tatcacaaat acaaaatgca acaaaagaat ttgaatggag gcatgtgcct gggattcata      4080
     atccagcaga tgcggtttcg agaggtagaa atcccgcaga ggttgttgag gataagcttt      4140
     ggtggcatgg accagattgg ctagtcaaag acccagaaca ttggcctaaa aatatagagt      4200
     caggaaacac ttgtgagaca gcgaaagaag aaaaacaaac gaaaactaca ttaacatgta      4260
     tggtgaaaga ggaaagtttt ataaacaaac tatgcgagag agtaggttca ttcacaaaac      4320
     taaaaaggat tgtcgcatat tgtcatcgtt tcttcgatcg taagcgaatc catcgcaaat      4380
     cttattttga gttgagggaa ctaaaacgag ctgaaaagac aatcattcga ttggttcaaa      4440
     atgaagtcta tgcaactgaa tacgagtgta tcaaacaagg gcaacaagta gtgcgaaaat      4500
     caccattgag agtgattaga ccaatactgg acaaagataa tgtcatgaga gtaggaggtc      4560
     ggttgtcaaa cgccgacata aaagacgaac aaaaacatcc tgttattatt ccaggaaagc      4620
     acaggattgc agagttgatt gccgacaagt accataagat acttcgtcat gctggggctc      4680
     aactgatgat aaacactatg cagttaaggt tttggatagt gggagcgcgc aatgtagcga      4740
     aacgtacagt tttcaactgt gtgaaatgta ctcgttgtag accaaaactg attcagcagc      4800
     caatggctga tcttccagag cagagggtga gacaagctag accgttctca attagcggtg      4860
     tggactacgc aggaccgata atggtaaagg gcacacaccg acgggcggtg cccacaaaag      4920
     gctatatttc aatatttgtt tgtttcgtaa caaaagcagt tcatatcgaa cttgtatcaa      4980
     atctaacctc ttctgcattt ttagctgcac tgcgtcgatt cgttgcgagg agagggcatg      5040
     ttacggaatt gcattcggat aacggcacaa acttccgagg tgcgaacaat aagttgcgcg      5100
     aactgtataa attactaaat tctgatacac accaagacga ggttgtagga tggtgcgccg      5160
     aacgagacat gaagtggaag tttacacccc cagctgcacc acattttgga ggtctgtggg      5220
     aggccgcggt gaaatctatg aaatttcatt taaagcgcgt gttaggtaca gggcatttaa      5280
     cgtttgaaga tttatcaacc ttattagccg aaatagaagc atgtctaaat tctcgaccaa      5340
     ttacggcaat atcagaagat ccaaatgata tggaagcact taccccaggg cattttttgg      5400
     tagggaatca cttacaaacg gtagcggacg tagacatcgc agatgtgcca acaaacagat      5460
     taaaccattg gagactgata caaaaacaca tgcaacacat ttggaatcgt tggcatcgcg      5520
     aatatttaag tacattgcag aagcgagcaa agtggaacaa aaatgcgata tcgattgagc      5580
     caggaagatt agtaattcta caagaagaca atgttgcagt atctaaatgg ccgatggcaa      5640
     gagtagtgga tttacatcca ggaaaagatg gtgttacacg agtagtaacg ttgaaatgcg      5700
     caaatggcaa ggaaattcgt aggccaattc atagaatagc tcctttacct atagaatcgt      5760
     aaattgaaat caataattgg aattatgtgg aattaagatg aggaatttta agaaatcaaa      5820
     taggaatatg aaaatgaatt caatcattac tgaatattaa aaaacattcg tttttggtga      5880
     ccgggaa                                                                5887
//
ID   BEL12-LTR_AG repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL12-LTR_AG is a long terminal repeat of the BEL12_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL12-I_AG; BEL12-LTR_AG; BEL12_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-204
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL12_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 32-32 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL12-LTR_AG flank an internal portion of BEL12_AG (deposited as
CC   BEL12-I_AG).
XX
SQ   Sequence 204 BP; 72 A; 29 C; 46 G; 57 T; 0 other;
     tgttggcgcc taaatggctg caaatttata gattgtaaga ttataggaaa agggtacata        60
     ggattacgtt agtattagtg ttagcaggac tgtcagggtt atgacgaaaa tataaaagga       120
     ttagtagcaa tcagacagtc gactcggcaa catacctttg gaaaccacta aaaaatatca       180
     cagtagttta tgagctatcg ttca                                              204
//
ID   BEL13-I_AG  repbase;    DNA;    INV; 5752 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL13-I_AG is an internal portion of the BEL13_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL13-I_AG; BEL13-LTR_AG; BEL13_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL13-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5752
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL13_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 33-33 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL13_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL13-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL13-LTR_AG
CC   LTRs. The BEL13-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 6 copies; they are less than ~1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1762-aa BEL13_AGp Bel-like
CC   protein
CC   (pos. 429 5714).
CC   BEL13_AGp is composed of the peptidase A16 (pos. 150-290), RING
CC   Zn-finger (pos. 385-422, reverse transcriptase (pos. 800-930) and
CC   integrase (pos. 1480-1620) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           429..5714
FT                 /product="BEL13_AGp"
FT                 /translation="MSVRRSDVHKTPAESEEWKIAPIDMEEAGPSSEIPAG
FT                 LDEAKEVHRPIDKNQCIRKHFLNKLQRIEEALSGTSLGDTTFLKGCANRLT
FT                 SLASEYEKWHQTVLETADMENFEDGEEEYARFEKRHFNLLLRIERGMSITT
FT                 NVSQSRVKLPELRLPTFDGSLEAWLPFRDSFSSLIDANASLSDVDKLRYLK
FT                 GALTKEANKLIADIEITSANYIVAWELLKARYENKKLAVKRHIDALFLIPV
FT                 MKKDSYESLIHILDSFERSVNITKQLGVATEGWSVLLAHMLHSRLDSATQM
FT                 HWEAHHRSTDVPEYYELLTFLKSHALVLQAMLSPGQKKEQYTSSWKQRSKS
FT                 EVHVVNSSMEICSFCKKGSHSPFKCDMFSGWTVQERYDKVKEKKLCINCLL
FT                 PGHIMKNCTSSVCRVCNKKHHTMLHKPVQTSNSAEASPNDREIVTQPDPPA
FT                 DQNVVTYCGNALLTNSIETPSTILLPTALVKIELPDGSLHWARALLDGGSQ
FT                 INLVTERLCQRLQVIKKRENHPIGGVGQSKHVSSHSTQLTIKSHCTSFKAN
FT                 WKFHVMRYITWNLPAEKVNKTRYCIPNTCTLADPKFYEPSSIDLLIGRESY
FT                 DELMLEGILKLVPEKVMLQNTELGWIVSGRVELERRPTSSIVNLVCTNQDL
FT                 ENQLTKFWEIESCNTNSTMSIEETSCEKVFSETTTRDDQGRFIVTLPTKKD
FT                 IVPQLGNSFEIAKRRLNSLNRRLASNKDLKAAYIAFLEEYVQLGHMEEITE
FT                 QHTNIDTPIYYLPHHCILRPDSLTTKLRVVFDASCATDSGLSLNDALMVGP
FT                 VVQDDLVAIMIRFRLPKFAIVADIEKMYRQVWIKKEDRSLQRILWQNCPEN
FT                 KLRIYELKTITYGTASAPYLATKCLQMLSVHGTSTHPEASRVLANEFYMDD
FT                 LLTGVETQTEGEELCHQLTDLLSSAGFTLRKWASNSSQILQSIPVDQRDTS
FT                 GLCSLDINSSIKTLGLKWIPATDELGFCVPIWTEDEQITKRIALSDASRLY
FT                 DPLGLIGPTIMIAKCFMQNLWALQKAWDEPLEKELHKQWNQFRQQLSIVKD
FT                 MRIPRRVVGSTHRIEIHGFSDASMKAYGACLYMKSVSEDGKVSVNLLCSKS
FT                 RVAPLANSKRQKNVTLPRLELSAALLLCHLWQKVKDSLKHEYSCFYWVDST
FT                 IVLHWINSSPSRWKPFVANRVSEIQHLTEPRHWNHVPGDQNPADIISRGMM
FT                 PSQLQESCLWWHGPEWLSQPSNTWKLHHPILDCPPSEFEERKTVLIINKQS
FT                 NIHHPIFSLKSTFSGLVRLMAYMQRFSYNCKPVNRNNRRQGYLQTFELHAA
FT                 RENLVRIAQNESFADDIRSLETAGEVKTSSSLRSLTPMLVNGVLRIGGRLR
FT                 NAPVAYDRKHPMILPYKHPLTRLVMDFYHLKTLHAGQQLLIASVREKYWPL
FT                 RVRNLARQVVHECIQCFRCKPSTMEQIMGDLPAERVTPTFPFLNTGVDFCG
FT                 PLFYRSASRKSAPVKCYVAVFVCLATKAIHLELVADLSSDAFISTLKRFVA
FT                 RRGKPSLLQCDNAKNFRGAERKLKVFHQQLQQQQFQQSISSYCGPEGIEFR
FT                 FIPPRSPHFGGIWEAAVKSFKHHFRATIGTSILRRDDLETIIAQVESCLNS
FT                 RPLTPISTEPEDLEVLTPGHFLIHRPLVAVPEPSYEEVPSNRLDRYQQNQE
FT                 FVRRIWNRWSTDYLSGLQPRTKWTKQRDNIHIGTLVLMKEDNLPPLKWSYG
FT                 RVTQIYRGDDGNIRVVTVKTKDGEYKRAITKICVLPIHSNTE"
XX
SQ   Sequence 5752 BP; 1667 A; 1200 C; 1313 G; 1572 T; 0 other;
     ttttggtcct tcaaatccgg atatcgtttg aaaatcgtga tctatggtga tctttcgtga        60
     acattcgtac gcctttgtga acagtcgagc attatcgtat gcgttgttca taggtgttcc       120
     tttcgttgta tgcgccttgt tcgtgtggag ttttatcttg ttgttattat ctatggtgat       180
     aatttgaaga cagttcctgt tagaggatac tttgttgaat atcatacaat tgagtgtgat       240
     attgtgcaaa ttcagcttgc tatcgggtat gctgtattag acgcggacaa tttttaggaa       300
     aagatacatt ggtgtgcgtg tacgtgtcgt caggctgtac ctgtttggaa gtgttggtga       360
     gatcgcttcg cagccatttt gaagagcagc atcttaaaaa gtattgtcgg cgcaaatagc       420
     tcaacaaaat gtcggtcagg agaagtgatg tgcacaaaac gccagcggaa tccgaggaat       480
     ggaaaattgc acccattgac atggaagaag ctggaccgtc atcggaaatc cctgcgggtt       540
     tggatgaagc aaaggaagtg catcggccta ttgataaaaa ccaatgtata cgcaagcatt       600
     ttcttaacaa attacagcga atcgaagaag cattgagtgg tacatcgttg ggtgacacga       660
     cgtttctgaa gggatgtgca aatcggctta cctcactggc gtcggagtat gaaaaatggc       720
     atcaaaccgt cttggaaacg gccgatatgg agaattttga ggacggtgag gaggaatatg       780
     cacgattcga aaaacgtcac ttcaacttat tgctacggat tgaacgtggt atgtcgatca       840
     ctacaaatgt ttcgcaatct cgtgtaaagc ttcccgaatt acggctgcca acgtttgatg       900
     gctctctcga agcttggctg ccttttcgcg attcttttag tagcctgatt gatgctaatg       960
     caagcctgtc agatgtggac aaattgcggt atttgaaggg agcattgaca aaggaagcaa      1020
     acaagctaat tgcggacatt gagattactt cggctaatta catagtggca tgggagcttc      1080
     ttaaggctcg ttatgaaaac aaaaagctag cggtgaagcg acatattgat gctttgtttt      1140
     tgataccggt aatgaagaag gattcgtacg agtcgctcat tcacatttta gatagtttcg      1200
     agagaagcgt caacataacg aagcagcttg gtgtggcaac agagggttgg agtgtgcttc      1260
     tggcgcacat gctacattct cggcttgatt cggctactca aatgcattgg gaggctcacc      1320
     atcgcagtac tgacgttcca gaatactatg aacttctaac gttcttgaag agtcatgcgt      1380
     tagtgttgca ggcaatgctg tctccaggcc aaaagaaaga acaatataca tcgtcgtgga      1440
     agcagcgatc gaaaagtgag gtgcacgtgg taaattcttc tatggagata tgctcgtttt      1500
     gtaaaaaagg ttcacattcg ccctttaagt gtgacatgtt tagtggctgg acagtacaag      1560
     agcgctatga caaggtcaaa gaaaagaagc tttgtatcaa ctgtttgttg cctgggcata      1620
     ttatgaagaa ctgtacatct agtgtatgcc gagtttgcaa caaaaaacat cacactatgt      1680
     tgcacaaacc agtacaaacc agtaattcag ctgaagcatc tcctaatgac cgggagatag      1740
     tgacgcaacc ggatccacct gcggatcaga acgtggtcac atactgtggc aatgctttgc      1800
     tgacaaattc gatagaaaca ccatctacta tcctattacc cacagctttg gtgaaaatag      1860
     agttaccaga cggatcgttg cattgggcac gagctctttt agatggagga tcgcagatta      1920
     atcttgtaac tgagcgtttg tgtcagcgat tgcaggtcat taaaaagaga gagaaccatc      1980
     caattggcgg agttggacaa agcaagcatg tatcatcgca ctcgacacag cttaccataa      2040
     aatctcattg cactagcttc aaggcaaatt ggaaatttca tgtaatgcgt tacattactt      2100
     ggaatttacc tgcagagaaa gtgaacaaaa cacgttactg cattcccaac acttgtactc      2160
     tagcagatcc caaattctat gaaccatcat ccatcgattt attgatcggc agagagagct      2220
     atgatgagct gatgctagaa ggtattctta aactggtacc cgagaaagta atgctacaga      2280
     acaccgagtt aggctggatc gtttctggca gggttgagct cgaacgtcgt cctacatcct      2340
     ctatagtaaa tctggtatgt actaatcaag acctagaaaa tcaactaact aaattttggg      2400
     aaatcgaatc ttgtaataca aatagcacca tgtctattga agaaacatca tgtgagaagg      2460
     ttttctctga aacaaccacg cgtgatgatc aaggaaggtt tattgtaacg cttcctacga      2520
     aaaaggatat cgttccacaa ctcggaaact cgtttgaaat cgccaaacgt agattgaact      2580
     cgctaaatcg tcgtcttgca tcaaacaaag accttaaggc tgcttatata gcctttttgg      2640
     aggaatatgt tcaattggga catatggaag aaatcacgga acaacatacg aacattgaca      2700
     cacccattta ttacttaccg catcactgta ttttacgccc tgacagttta actacaaagc      2760
     ttagagtcgt gttcgatgcg tcttgtgcta ccgactccgg cctctcgttg aatgatgcgt      2820
     taatggtggg tccagttgtt caggatgatt tggtcgcaat tatgattcgt tttcgtctgc      2880
     ccaaatttgc aatcgtagcg gacatcgaaa agatgtaccg acaagtatgg attaaaaaag      2940
     aggatcgctc gttacaaaga atcctttggc agaattgtcc cgaaaataag cttcgaatat      3000
     atgagctaaa aacaattacg tatggcactg catctgctcc ttacttagca accaaatgtt      3060
     tgcaaatgct ttccgttcat ggaacttcta ctcatccgga agcctctaga gtactggcaa      3120
     atgaatttta tatggacgac ttgcttaccg gagtagaaac tcaaacagaa ggagaagaat      3180
     tatgccatca actaactgac ttgttgtcga gtgctggttt tactttgaga aaatgggcgt      3240
     ctaactcttc ccaaattctg caaagtattc ccgtagacca acgcgatact tctggattgt      3300
     gcagccttga cataaatagt tccattaaga cattgggtct taaatggatc ccagcgaccg      3360
     atgagttggg attctgcgta ccgatttgga cagaagatga acaaataaca aagcggatag      3420
     ccttatcaga tgcatcgcgt ctatacgatc cattgggact cataggtcca acaataatga      3480
     tagccaaatg ctttatgcaa aatctttggg cactacaaaa ggcatgggat gagccgctag      3540
     aaaaagaatt gcataaacaa tggaatcagt ttcgccaaca gctctcaatt gtgaaagaca      3600
     tgcgtatccc acgtagagtg gtaggaagta cccatcgcat cgaaatccat gggtttagtg      3660
     atgcgtctat gaaggcttat ggagcctgtt tatatatgaa atcggtctct gaggatggaa      3720
     aagtttctgt taaccttttg tgctctaaat ccagagttgc tccactcgca aatagcaaac      3780
     gacagaagaa cgtcacttta cctcggctgg aattatctgc agctttattg ttatgccatc      3840
     tctggcaaaa ggttaaagat agtcttaaac acgagtattc gtgtttctac tgggtggatt      3900
     cgaccatcgt gcttcactgg ataaacagta gcccgtcacg ctggaagcca tttgttgcta      3960
     atcgggtgtc tgaaatccag catctgacgg aacctagaca ttggaatcat gttcctgggg      4020
     atcaaaatcc agctgatatc atctctagag gaatgatgcc gagtcaattg caagaatcat      4080
     gcctatggtg gcatggacca gagtggttaa gccaaccatc caatacttgg aagctacatc      4140
     atccaatact cgattgccca ccctctgagt ttgaagaacg gaagactgtt ctgatcatta      4200
     acaaacagtc taatattcat catccaatat ttagcttaaa atcgacattc tccggactcg      4260
     ttagactgat ggcatatatg caacggttta gctacaactg taaacctgtt aatagaaaca      4320
     atcgtcgtca aggctacctt caaacatttg aactacatgc agcaagagag aatttggtac      4380
     gcattgcaca gaacgaatct tttgctgatg atattcggtc tctcgaaact gctggagaag      4440
     tcaaaacatc gtcatcttta agatcattga caccaatgct tgtaaacggt gtactacgca      4500
     ttgggggacg tcttcgaaat gctcctgttg cttacgatcg gaaacaccca atgatactgc      4560
     cctacaaaca tccattgaca cgtcttgtca tggatttcta tcatcttaaa accttacatg      4620
     ctggacaaca actgttgatt gcttctgttc gagagaaata ctggccttta cgcgttcgaa      4680
     accttgctcg gcaagtagta cacgagtgta tccagtgctt ccgttgtaaa ccatcgacaa      4740
     tggaacagat aatgggagat ttacccgcag aacgagttac tccaactttt ccgttcctga      4800
     acactggtgt cgatttctgt ggaccgctgt tttatcgttc ggcgtccagg aaatctgctc      4860
     cggtgaagtg ctacgttgca gtatttgtgt gcctggccac gaaggctatc catctagaat      4920
     tggtagctga tttgtcgtcg gatgcgttca tatcaacact gaaacgattt gtcgctcgtc      4980
     ggggaaaacc atctcttctt cagtgtgata acgctaaaaa ttttcgtgga gcggaacgaa      5040
     aattgaaagt gtttcatcaa caactgcagc aacaacaatt tcaacaatca atttcgtcgt      5100
     attgcggtcc agaaggtata gagtttcgtt ttatccctcc taggtctccc cactttggtg      5160
     gaatctggga ggccgccgtc aagtctttta agcatcattt tagagctact attggaactt      5220
     cgatcctgcg tcgagacgac ttagaaacga tcatcgccca ggtggaaagc tgcttgaatt      5280
     cgcgcccttt gaccccaatc agcacggaac ccgaggattt ggaggtgctt actccagggc      5340
     atttcctgat ccatcgtcct ctggttgctg ttcctgaacc ttcatacgag gaagtgccat      5400
     ctaatcgcct ggatagatat caacagaatc aggaattcgt gagacgcatt tggaaccgat      5460
     ggagtacaga ctacctgtct ggcttgcagc cccgcacgaa gtggacgaaa caacgggaca      5520
     acattcatat cggaactctc gtgttgatga aggaagacaa cttgccaccg ttgaaatgga      5580
     gttatggacg agtaactcaa atctaccgag gagacgacgg caacatccgc gtggtcacgg      5640
     tgaagacaaa ggacggcgaa tacaaacgag caattacgaa gatctgcgtt ttgcccatcc      5700
     attccaacac ggaataagtg gtggaaattt caatttccac gggggccggc ta              5752
//
ID   BEL13-LTR_AG repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL13-LTR_AG is a long terminal repeat of the BEL13_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL13-I_AG; BEL13-LTR_AG; BEL13_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-240
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL13_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 34-34 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL13-LTR_AG flank an internal portion of BEL13_AG (deposited as
CC   BEL13-I_AG).
XX
SQ   Sequence 240 BP; 74 A; 53 C; 54 G; 59 T; 0 other;
     tgttaagaat gcttggtatc atggccgctg acagccaccg agtgacgcaa cctgcgctct        60
     gacagattac cgcgtttttg aactgtcaaa ccacaagccg aagagttgtg tgagtgtgtg       120
     ttcgctagga gatcgagaac agagcacatg cagaaagttg atcgcaaata aaacatcgta       180
     aaaaacccac cgaacagtgc cgcattatag tttgaatcat ttcgcttatt tcaattaaca       240
//
ID   BEL14-I_AG  repbase;    DNA;    INV; 5776 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL14-I_AG is an internal portion of the BEL14_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL14-I_AG; BEL14-LTR_AG; BEL14_AG; Bel clade; PHD domain;
KW   integrase; protease; reverse transcriptase.
XX
NM   BEL14-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5776
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL14_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 35-35 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL14_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL14-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL14-LTR_AG
CC   LTRs. The BEL14-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 16 copies; they are ~1.5% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1898-aa BEL14_AGp Bel-like
CC   protein
CC   (pos. 57-5750).
CC   BEL14_AGp is composed of the PHD (pos. 9-55), protease (pos.
CC   277-400),
CC   reverse transcriptase (pos. 900-1060) and integrase (pos.
CC   1600-1765)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..5750
FT                 /product="BEL14_AGp"
FT                 /translation="MGPKKARGCKACGNQVDDTLYVQCDECDAWWHFSCAG
FT                 ITASVEAVEKCAWLCEECARKTLREQSSPREGNKEPKEGTSKHVDGDLVRN
FT                 LSLEAATDGGARPVTNPQRRPLLSLDEANDEIAPGTSTHVAGGPVHNLNQD
FT                 AATEGGVRPVMTPKRRPLSSLDEADRGKTSVSSNIVHRGSCPNLNLDAASD
FT                 DVARQLAVLKRRQEVEKRRMELELQLKFVQEEEALLGFGENKSFSISPQLN
FT                 SFQTEKRTVKRSEEEKEEPDLTPRQEAARHMVSKELPVFSGDPAEWPIFIS
FT                 HYEYTTRRCGYSNWENMLRLQKCLKGPALEAVRSRLVLPDVVPQVIEKLRS
FT                 KYGRPVHLIKTFIEKVRKIPAPQTDKLDSLVEYGEAVQCMVDHMVAAGERA
FT                 HITNPLLLQEVVGKLPTDQQLRWSHHIRGMTSVDLSTFSDYMEDLAEDAAR
FT                 LTTIDSPSVRGTSKGRPTKGYVHAHVDPDGATTSSAAERQCVSCNVAGHVL
FT                 STCTNFRGLPVKDRWRRARELSVCFSCLEKHNWRSCKNRSRCGINDCAFRH
FT                 HALLHDPDAIESPSTADRERRHFPRTSGSQTHQVINNYHQSNPMSALFRIV
FT                 PVTAYGPGVMIKTFAFLDEGSSMTLMDEDLAKQLGVKGDRRPLCIKWTGDT
FT                 TRVEPASMMIDLQIGPVTSTKRFTLKAVRTVTSLSLPQQTFTMDDKRWDHL
FT                 KQLPLPEYRDARPQLLIGLDNLRLAVPLKTREGLAGEPVAVKTRLGWCVYG
FT                 KTAGSQIGRVLHMCECGASDENSTIQGALRKFYELEQLGTVSSDVPDPDER
FT                 RALTILETTTVRIGNRFESGLLWKTDNVELPSSLGMARRRLECLERRMERD
FT                 PKLKTVVHHHIADMMEKGYIHKATSAELAECNSKRIWYLPLGVVTNPKKPG
FT                 KVRIIWDAAAKVQGTSLNDMLLKGPDELISLPGVLFRFRMYGIAVCADVKE
FT                 MFLQIRMRDEDKHAQRFLWREDPADDIATYFVDVVTFGSACSPATAQYVKN
FT                 RNAKEHAEKYPRAVRGILTSTYVDDYLDSFGTFEEASRVSREVRGIFSNGG
FT                 FVLRNWVSNNPVVLERLGGESSSPGMKSLTSTADDGERVLGLRWNPSSDQL
FT                 SFYTQACVGMAEIFETECTPTKREVLKCVMSLFDPLGLLANFTIHGRILIQ
FT                 DLWRAGTGWDEAISPSQMRDWRRWVDVFPLIAQLRIPRCYFPEAREKVYEN
FT                 AELHLFVDASQLAYACVLYLRVVDSEGEPHCTMLCGKAKVAPLKPLTIPKM
FT                 ELQACLLGARLLKSTEQHHPISVKKRVLWTDSTVALSWIHADPRNYRPFVA
FT                 NRVAEIQENTNVNEWRWVPTQDNPADEATKWKGRANFNWDGIWFQGPSFLL
FT                 QDEESWPTRRLVSTTPEEEIRRVNLHREKLNPGLLPLKAERFSRLERMIRT
FT                 LAWIVRYVDNLMRKVGGAPLHLGILSQDELERAETIAWKQAQGEYFQDEVR
FT                 VLSVGEGTGRSTVPKESPIYGLLPYADERGVLRMRGRIGAAPELPYAARYP
FT                 IVLPRDAWITHLLVDKFHRRFRHANNETVVNELRQYFQIPKMRRLVSKVVR
FT                 QCVFCHIRRTLPQIPPMAPLPKQRLTAFVRPFTFVGLDYFGPLLVRRGRAQ
FT                 EKRWVALFTCLTIRAIHLEVVSSLSTDSCILAVRRFVARRGAPVEVFSDNG
FT                 TNFVGASQQLRKEIDERNDALAATFTNANTRWTFNPPGAPHMGGVWERMVR
FT                 SVKAAMSTMTELQRTPDDETLLTVIVEAEGMINTRPLTYIPLESADQESLT
FT                 PNHFLLGSSSGVKQRPVAPTSLQTGLRSNWKMVQHILDGFWRRWIKEYLPV
FT                 LARQSKWFETVREIEVGDIVLIVDGGARNQWKRGIVERVVSGADGRIRQAW
FT                 VRTNTGTLRRPAAKLALLEIRKGDK"
XX
SQ   Sequence 5776 BP; 1463 A; 1325 C; 1755 G; 1233 T; 0 other;
     ctcttttgcc tacaaaaaag ggttcttcag tgcgttaagt gtaatagtga agaacaatgg        60
     gaccgaagaa agcacgtggt tgcaaggctt gcggtaatca ggtcgacgac actttgtacg       120
     tgcagtgcga tgaatgtgat gcgtggtggc atttctcgtg tgccggtata acggcatccg       180
     tagaagccgt ggagaaatgt gcgtggttgt gcgaggagtg tgccaggaag acgctgagag       240
     agcaatcatc gccacgcgag ggcaataagg agcccaagga aggaacctcg aaacacgtgg       300
     atggggatct cgttcgtaac ctcagtttgg aagcagcgac ggatggcggg gcgcgcccgg       360
     ttacaaaccc acagaggcgg ccgcttttat cgctcgatga ggccaacgac gagatagcgc       420
     caggaacatc gacccacgtg gcagggggac ccgtacataa cctcaaccag gatgctgcga       480
     cggaaggcgg ggtgcgcccg gtcatgacac caaagaggcg gccgctttca tcgctcgatg       540
     aggccgacag aggtaaaacg tctgtctcat cgaacatcgt gcacagagga tcgtgtccta       600
     acctcaacct ggatgcggca agtgatgacg tggcacgtca actcgccgtg ctgaagcggc       660
     gacaggaggt ggagaaacgg cgcatggagc ttgaactgca gctgaagttc gtgcaggagg       720
     aagaggcact tctcgggttt ggggaaaata agtctttttc aatttcacca caacttaact       780
     cttttcagac tgaaaagaga acagtgaaac gcagcgaaga agaaaaagag gaaccagacc       840
     taactccacg acaagaggct gcgcggcaca tggtttctaa agagctccca gttttctccg       900
     gtgatcccgc tgagtggcca atttttatat cgcactacga gtatactacc aggcgatgtg       960
     gatactcgaa ttgggagaat atgctgcgcc tgcaaaagtg cctgaaagga cctgccctcg      1020
     aagctgttcg gagtcgattg gtgttaccgg acgtagttcc gcaggttatc gagaagctac      1080
     gttccaaata tgggcggccg gtgcacttaa ttaaaacatt catcgagaag gtgcggaaga      1140
     ttccggcacc ccaaactgac aagctggaca gtttagtcga gtatggggaa gcagtgcagt      1200
     gtatggtgga ccatatggtt gcggctggtg aacgtgcgca tatcaccaac ccgctcttgc      1260
     tgcaagaggt ggtcggcaag ttaccaacgg atcaacagtt acgttggtcg catcacatcc      1320
     gcggaatgac ctcggtagat ctgtccacat tcagcgacta catggaggat ttggctgaag      1380
     acgctgcgag gctgacgaca attgactctc cttcagtgcg cgggaccagc aagggaaggc      1440
     ctacgaaggg ctacgtccac gcgcacgtgg atccagatgg agcgacaacg tccagcgcgg      1500
     ctgagaggca gtgtgtatcc tgtaacgtcg cggggcatgt attgtcgaca tgcactaatt      1560
     ttcgaggact gccggtaaag gatcgatgga ggcgagcgcg tgagctatcg gtgtgcttta      1620
     gctgcctgga gaagcacaat tggcgatcgt gcaaaaatcg ctctcgttgt ggaatcaacg      1680
     attgtgcatt ccgacatcac gcgcttctac acgacccgga tgcaatagag tcgccttcta      1740
     ctgcagaccg agaacggcgg cacttcccga gaaccagtgg aagtcagacg caccaggtaa      1800
     taaataatta tcatcagtcg aatccgatgt cggcgctttt tagaatcgtt ccagtaacag      1860
     cgtatggacc cggagttatg ataaaaacct tcgcgttcct ggacgaaggt tcgtcaatga      1920
     cgctgatgga cgaagacctg gcaaagcagt taggggtgaa gggagataga cgacctctat      1980
     gtatcaagtg gacaggtgat acgactaggg tcgagccggc gtcgatgatg atcgatttac      2040
     agatcggacc tgtgacgtcg acaaaaaggt tcaccctgaa agctgtgcgg actgtcacca      2100
     gccttagcct cccacagcaa actttcacga tggatgacaa gagatgggac catcttaagc      2160
     agctgccatt accggagtac cgtgatgctc ggcctcagtt gttgatcggg ctggacaacc      2220
     ttcgattggc ggtgccgctg aagacgcgtg aaggccttgc aggggaaccg gttgccgtaa      2280
     agactcggct tggatggtgc gtgtacggaa agacggctgg aagccaaatc ggaagggtgc      2340
     tgcatatgtg cgagtgtgga gcatcggacg aaaactccac catccagggg gccttacgca      2400
     agttttatga gttggagcaa ctcgggactg tctccagtga cgtgcctgat ccagatgaac      2460
     gaagggcact gacgatcctg gaaacaacga cggtgcggat tggtaatcgg tttgaaagcg      2520
     gtctgttgtg gaagacagac aacgtggagc ttccttcgag cttgggtatg gcgcgtcgca      2580
     ggctggaatg cttggaaaga agaatggaac gtgaccctaa gctgaaaacc gtggtgcacc      2640
     atcacatagc cgatatgatg gaaaagggtt atatccacaa ggcgacgtct gctgagcttg      2700
     cagagtgtaa ttcgaagcga atttggtacc tgccgttggg agtggttacc aatccgaaga      2760
     agccagggaa ggtgcgcatc atctgggacg ccgctgctaa ggtacaaggt acgtccctaa      2820
     atgacatgtt gctgaagggg ccggacgagt taatttcttt gccaggggtg ttgttccggt      2880
     ttcgaatgta cgggatagcg gtgtgcgctg atgtcaagga aatgttcctg cagatacgca      2940
     tgcgcgacga agacaagcat gcgcagcggt tcctgtggcg ggaagatcct gctgacgata      3000
     tcgcaacgta tttcgtggac gtcgttacct ttgggtcagc ctgctcccca gccaccgcac      3060
     aatacgtgaa aaaccggaac gccaaggaac atgccgaaaa ataccctcgt gccgtacgtg      3120
     gcatcttgac cagcacgtat gtcgacgact atttggatag tttcggaaca ttcgaagaag      3180
     ccagtcgagt atccagagaa gtcaggggaa tcttctcgaa cggcgggttc gtactccgga      3240
     actgggtttc caacaatccg gttgttttgg aacggctggg cggcgaaagc tccagtcccg      3300
     gtatgaagag tttgacatct acggcggatg atggagaacg ggtgctcgga ttgcggtgga      3360
     acccgagctc ggaccaattg tccttttaca cgcaggcgtg tgtgggaatg gcggagatat      3420
     ttgagacgga gtgtacccct accaagcgag aagtgctcaa atgcgtgatg tcactttttg      3480
     atccgcttgg actgttggca aactttacca tccatggaag gatcttgatt caagaccttt      3540
     ggcgagctgg taccggttgg gatgaggcca tcagtcccag tcaaatgcga gattggcgta      3600
     gatgggtgga tgtttttcct ctgatagccc agcttaggat tccgaggtgc tacttcccgg      3660
     aggcacgaga gaaagtgtac gagaatgcgg agctacactt gtttgtggat gccagccagc      3720
     tagcgtacgc ttgcgtgctg tatttacggg tcgtcgattc tgaaggagaa ccgcattgta      3780
     ccatgctatg cggaaaggca aaggttgctc ctctgaagcc tttgacgata ccaaagatgg      3840
     agttacaagc ctgcttgtta ggtgcacggc ttctgaagtc cacggaacag catcacccga      3900
     tttctgttaa aaaacgggtg ctctggacgg acagcacggt ggcgctatca tggatacatg      3960
     ccgaccctag gaattacagg ccatttgtcg cgaatagagt ggcggagatt caggagaaca      4020
     ccaacgtgaa tgagtggcga tgggtgccca ctcaggacaa tccagcagac gaagctacca      4080
     aatggaaagg gcgtgcgaac ttcaactggg atggcatttg gttccagggt ccatcatttc      4140
     tgctgcagga tgaagagtct tggccgacga gaagactcgt ttcaactact ccggaggaag      4200
     agatacggcg ggtcaacctt caccgtgaga agttgaatcc tggacttctc cctctaaaag      4260
     ctgaacgctt cagccgcctg gaaagaatga tcaggacgtt ggcgtggatt gtcaggtacg      4320
     tggacaattt gatgagaaag gtgggaggag cccctctaca ccttgggatc ctctctcaag      4380
     acgaattgga gagagcggag acgatcgcgt ggaagcaagc gcaaggggaa tattttcagg      4440
     atgaagtacg agtcctgagt gtcggtgagg gaacaggaag gagtaccgtg cctaaggaaa      4500
     gtcctatcta tggtctctta ccctacgcgg atgagcgtgg tgttttgcgc atgcggggac      4560
     ggattggagc agctccggaa ctgccatatg ctgccaggta cccaatcgta ttgccacgtg      4620
     acgcatggat aacccacctg ctggtggaca aatttcatcg ccggtttcga cacgccaata      4680
     acgaaaccgt ggtgaacgag ctgaggcagt atttccaaat cccaaagatg agacggttgg      4740
     tttcaaaagt ggttcggcaa tgcgtgttct gccatattcg acgaacattg ccacagatcc      4800
     ccccgatggc tccattaccg aaacagcggc tcactgcatt cgtgaggccg ttcacatttg      4860
     tgggactgga ctactttgga ccgctgttgg tgaggagagg aagagcacag gagaaacgat      4920
     gggtggcgct tttcacatgc ctaaccataa gagcaattca tttagaagtt gtgagtagtc      4980
     tttccacaga ttcctgtatt ttggcagtga gacgctttgt ggccaggaga ggcgctcccg      5040
     ttgaggtgtt cagcgacaac gggacgaatt tcgtgggagc cagccagcag ctaaggaagg      5100
     aaatcgacga gcgcaacgat gccttagctg cgacctttac caacgcgaac acccgatgga      5160
     cgttcaaccc ccctggcgca ccccatatgg gaggggtatg ggaacgcatg gtgcgatcgg      5220
     tgaaggctgc gatgagtacg atgacggaac tacagcgtac acctgatgac gagacgctgc      5280
     ttacggtgat agtggaagcg gagggaatga tcaacacacg cccactgacg tacatcccgc      5340
     tggaatcggc ggatcaggag tctcttactc ctaaccactt cttgctgggc agttcatcgg      5400
     gagtgaagca gagaccggtg gcaccgacta gccttcagac ggggttacgg agcaactgga      5460
     aaatggtgca acatatcctg gacgggtttt ggagacggtg gataaaagag tatcttccgg      5520
     tgttggcacg gcaaagcaaa tggtttgaga ctgtgagaga gattgaggtt ggagacattg      5580
     ttctgatagt cgacggtggc gctaggaatc agtggaagag agggatagta gaacgagtgg      5640
     tttcgggagc cgacgggcgg atacgacaag cttgggtgcg aacaaacaca gggaccctca      5700
     gaaggccggc ggctaaactt gccttattag agataagaaa gggtgacaaa tagcgtattg      5760
     gtcacgggct ggggga                                                      5776
//
ID   BEL14-LTR_AG repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL14-LTR_AG is a long terminal repeat of the BEL14_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL14-I_AG; BEL14-LTR_AG; BEL14_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-400
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL14_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 36-36 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL14-LTR_AG flank an internal portion of BEL14_AG (deposited as
CC   BEL14-I_AG).
XX
SQ   Sequence 400 BP; 106 A; 80 C; 109 G; 105 T; 0 other;
     tgttacgaaa agaacttagg cgagccctgc aattatctac caaaccgggc gaaatttgca        60
     gcgagttaga aatgatcggg cgaacccgat cgtggccgga gcgcgatgaa caccacacgt       120
     gtgtgtgggt gagtgctcaa gaggccgaaa aggaagaggt tcgggttcgg gatatcgcag       180
     ggcattcggc aagcgtacga gcagggaacg ggttggcaga gagcgatagg cgaacctttt       240
     ttgtagttct tgatttttca ttgctttttt ctttgctcta actggataga tttgcttaag       300
     tacatacagt tcaactttag ttaatctgtt gggtgaaaat aaagacatta ttgtagagct       360
     gaactcacaa acgcctacta cgcgcctcct tgtgcttaca                             400
//
ID   BEL15-I_AG  repbase;    DNA;    INV; 5669 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL15-I_AG is an internal portion of the BEL15_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL15-I_AG; BEL15-LTR_AG; BEL15_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL15-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5669
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL15_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 37-37 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL15_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL15-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL15-LTR_AG
CC   LTRs. The BEL15-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 6 copies; they are less than ~1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1741-aa BEL15_AGp Bel-like
CC   protein
CC   (pos. 311-5533).
CC   BEL15_AGp is composed of the peptidase A16 (pos. 120-290),
CC   reverse transcriptase (pos. 770-900) and
CC   integrase (pos. 1450-1600) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..5533
FT                 /product="BEL15_AGp"
FT                 /translation="MANAVNLLSRRRTLEEKIQRVIAFADNFVPERDEFRL
FT                 GLFISDTERVAAEFDTVQQLIEDGAAPEAREMESHFRATTEDALMAARASL
FT                 QALSRPSHNVIPASSTIATSGVRLPTISLPEFDGNEMQWATFRDTFEALIH
FT                 CNEEVLTIQKFHYLRAALKGEAAKLLESIPLCASNYNIAWKSLVDRYANEY
FT                 LQKKRHLQAMFNIGKVTKESNASLHRLVDDFDRHVKMLHQLGEPTAQWSTV
FT                 LEYVLCTKLPDETLRTWEDYASTLSSPNYSMLIEFLQRKMRTLESISMNHP
FT                 ATREATHPSFVRRAPQHLSSCSTMASSSKGCPHCQHDHALSSCYKFCRLPL
FT                 SERFQIAIEKKVCHNCLRKGHLARNCASSSRCKHCGERHHSLLHRSSAVGT
FT                 EPKLVYAEGQESTGRNDRYQAQSLNVTKHPIRSEEVFLLTVRLSIVDADGK
FT                 EHSVRALLDCASQPNLMTEKLVKLLQLQRCPSNVKISGAGKISRDVRGSVF
FT                 AEIRSKRQPFSCGVQFLVMDKLTSNLPSETVSVGHWCIPKGLELADPEFNT
FT                 SQPVDLVIGVKHYYSFFPSAARVHLGDELPLLIDSVFGWIVAGSATLQCPE
FT                 PQVTSSNAICMMSLEESIERFWKTDSLVMKDGYSPEERRCEQIFRDTTARN
FT                 ETGRYIVRLPRHPDFGIRLGASKVSAVRRYDLLERRFAKNSKLKEEYHAFM
FT                 KEYLELGHMSLVRDGDAVPAESYYLPHHPVFKESSTTTKIRVVFDGSSKTT
FT                 SGYSLNDALCVGPVVQDDLLDQLLRFRTYKVALVGDIAKMYRQILLHPDDR
FT                 PLVRILFRFEPQQPVQTYQLNTVTYGLAPSSFLATRALIQLADDEGNAYPR
FT                 AGPALRKNFYVDDFIGGAQSVEEATCLRTELAELLQKGGFELRKWTSNCVD
FT                 VLHGLDEAQVGTTTKMSFDSHEAVKTLGISWVPQGDWLVFEGVCQPDDDVI
FT                 TKRSVLSAIAKMYDPLGMIAPIIIRAKMIMQEIWVSSRDWDESLPEDIVCK
FT                 WKQFQKEIRSLSQYRMDRFILLPEARNIELHTFADASSAAYGACTYVRCED
FT                 AGRVRVMLLASKSKVAPLKNLTIARLELCACVLAAHLHHRIKGAIDVAVNA
FT                 SYFWTDSAICMHWIKAPPSTWKTFVANRVAEIQHFTSGAKWRHVAGVENPA
FT                 DLVSRGMEVSEFNNSRAWRHGPAWLEHSQDAWPMPNPQSIPEVAEQERKEL
FT                 ISAVTVCHNELFLYWSSYTRLVNVVSYCMRFIAMLPHLRQLRGRRVLRSSE
FT                 GNAQLKDVSSRKVLSARERAAAVNALTRLAQRESFAEELRDLQGGKRVKKQ
FT                 SELKRLTPFVDEKGIIRVGGRLNLSQLPYQSKHPALLPKGHPLARLIAEHD
FT                 HKMLLHGGGRLLLSVIREKFWPLNGRMLVKSVVRSCIKCIRYQPTLAEQHT
FT                 GQLPAARIIPSRPFAVTGVDYAGPLYLKPAHRRAASLKAYLCVFVCFATKA
FT                 VHLELVGDLSTDGFLAALRRFTARRGVPDHLHSDNGKNFEGARNELRELFA
FT                 TLTSEAAQSTIASSCADQGISWHMIPPRAPHFGGLWEAAVKTAKRHLFRHL
FT                 GSTRLSFEGYYTVLHQIEAAMNSRPLLPLTDDPNDLAALTPSHFLIGSSLT
FT                 ALPDPDMTMAHTNAHEHLAKLQLLVQKFWKHWQKEYLQELQKDPRVARQAD
FT                 QIQPGRMVILMDELLPSTRWPLARVIEVHPGPDGLVRVVTLRTIKGLIKRP
FT                 IAKICPLPVEERGNNTLPAAT"
XX
SQ   Sequence 5669 BP; 1408 A; 1286 C; 1506 G; 1469 T; 0 other;
     tttggtgccg tgaccaggat tggtgtattg tgaagtgaaa ttgttgctcg ttttttgtga        60
     ttttgctgcg tgtaaaaatc tgttgacttt acgttttttc gtcaccgacc atagacaacg       120
     aacagtttct ttcgaaattc gttgtccagt gcttgttgcg tgttgtgact tgattgttga       180
     acattgtgta attgtttgat tggtgtgata attgatcata cgcacggaca gaacatttgt       240
     gaatttgtgt ttcgtgttca gtgtcctgtg tttttagcgc catcgttcca tctgccatta       300
     cgagactgat atggctaacg ctgtaaattt gctgtccaga cggcgaaccc tggaagaaaa       360
     aattcagcga gttatagcat ttgctgataa ttttgtgcct gagcgggatg aatttaggct       420
     tggcttgttc atctccgaca ccgaacgtgt tgcagcagag ttcgatacag tgcagcagtt       480
     gatcgaggat ggagcagcac ccgaagcgcg cgaaatggag agccattttc gcgctacgac       540
     tgaggacgcc ttaatggccg cgagggccag cctacaagcg ttgtcgcggc catcgcataa       600
     tgttattccc gcctcatcga ccattgctac atctggagtg aggctgccaa ccatttctct       660
     tccagaattt gacggcaatg agatgcaatg ggcgacattt cgggacactt ttgaagcact       720
     aatccactgc aacgaagagg tgctaactat ccaaaagttc cattatcttc gagctgcgct       780
     caaaggtgaa gctgcaaagt tgctggaatc gattccgttg tgtgcatcta actacaacat       840
     tgcctggaaa tcgttggtgg acagatacgc caacgagtat ctacaaaaga agcgtcatct       900
     acaggcaatg ttcaacatcg gcaaggtgac caaggaatcg aacgcatcgt tgcacaggct       960
     ggttgacgat tttgatcgtc acgttaagat gctgcatcag cttggcgaac caacagcgca      1020
     atggagcacc gtgctagaat atgtgttgtg caccaagctt cccgatgaga cgctacggac      1080
     gtgggaagat tatgcttcca ccctcagcag cccgaactac agcatgctaa ttgagttcct      1140
     gcaaagaaaa atgagaacat tagaatcgat ttctatgaac catccggcaa cgagagaagc      1200
     tactcatcct agttttgtac ggcgagcccc acagcacctt tcttcctgct caaccatggc      1260
     gagcagttca aaagggtgcc cgcattgcca gcatgatcat gccttaagca gttgctataa      1320
     gttttgccgt cttcctctgt ctgagcgttt tcagatagct attgagaaga aagtttgcca      1380
     taattgctta agaaaaggtc atttggcaag gaactgcgct tcatcgtccc ggtgcaaaca      1440
     ctgtggtgag agacatcact ctcttttgca tcgttcgtct gcagtcggta cggaaccgaa      1500
     actcgtgtat gcggaaggac aagaatctac aggaaggaat gatcgttacc aagcacagtc      1560
     gctcaacgtt actaagcatc ctattcgatc ggaggaagtg tttttgctca ctgttcgttt      1620
     gagcatagtt gatgctgatg gtaaagagca ttcggtacgc gctttgctag actgtgcttc      1680
     tcaacccaac ctcatgacag agaaacttgt caaattgctg cagctacaac ggtgtccttc      1740
     taacgttaaa atatcgggag ctggaaagat atctcgtgac gttcggggat cagtgtttgc      1800
     tgagatacgc tccaagaggc aaccattcag ctgtggtgtt cagttcctgg taatggacaa      1860
     gctgacatcc aatttgcctt ctgagactgt aagtgtcggt cactggtgta tcccaaaagg      1920
     cctcgagcta gctgatcccg aattcaacac atcgcagccg gttgatttgg tgataggtgt      1980
     caagcactac tattcattct tccccagtgc agccagagtt catttgggtg atgagttgcc      2040
     gctattgatt gatagtgtgt ttggttggat tgttgctggt tcggctacgt tacaatgccc      2100
     ggaaccacag gtaacaagtt caaacgctat ctgtatgatg tcgctggaag agagcatcga      2160
     acgattctgg aagacagatt cattagtgat gaaggatggc tactcgcctg aggaacgaag      2220
     atgcgagcag atattccgtg atacaacggc gagaaatgag actgggcgtt atatcgtacg      2280
     cttaccccgt catcccgatt tcggcatcag actgggtgct tccaaggtaa gcgcagtacg      2340
     aagatatgat ctgttggaga ggaggttcgc taaaaattcc aagttgaagg aagagtacca      2400
     tgcgtttatg aaggagtatc ttgagctcgg gcacatgagt ttagttcggg atggagatgc      2460
     agtacctgct gagtcgtatt atttgccaca tcatcctgtg ttcaaggagt ctagcaccac      2520
     aacgaaaatc agggtcgtgt tcgacggttc ttctaaaacc accagcgggt actcgttgaa      2580
     tgatgctttg tgcgtgggac cagtggtgca ggacgacttg ctagatcagc ttttgcggtt      2640
     ccgcacgtat aaggtggcat tagttggcga tatagcaaaa atgtaccgcc aaatacttct      2700
     tcatcctgac gatcgaccgt tggtgcgaat cttgtttcgc ttcgagccgc agcagccggt      2760
     gcagacctac cagctgaata ctgtaacgta tggtctcgca ccttcctcct ttctcgctac      2820
     gcgcgctctt attcagctgg ctgatgatga gggtaatgca tacccacgag cgggccccgc      2880
     tctacgaaag aatttttacg tcgacgactt catcggtgga gcccaatcag ttgaggaagc      2940
     cacctgccta cgaactgaat tggctgagct actacaaaag ggcggatttg agctgcggaa      3000
     atggacgtcg aactgtgttg atgtgctgca tgggctggat gaggcacagg ttggaaccac      3060
     aaccaaaatg agcttcgatt ctcacgaagc cgtgaagaca cttggcatca gttgggttcc      3120
     acaaggtgat tggctggtgt ttgaaggtgt gtgccagcca gacgacgatg tgatcaccaa      3180
     gcgatctgtg ttatctgcca tcgcaaaaat gtacgatcct ttggggatga tagcgccgat      3240
     aatcatccgt gctaagatga ttatgcagga gatatgggtg tcgtcacgtg attgggatga      3300
     atcgttgcca gaagacatcg tatgcaagtg gaagcaattt cagaaggaga tacgatctct      3360
     atcacaatat cgaatggaca gattcatact gcttcctgag gcgcgaaaca tcgagctgca      3420
     cacttttgct gatgcatctt ctgcagccta tggtgcttgc acatatgtgc ggtgtgaaga      3480
     cgctgggcga gttcgagtca tgcttttagc gtcgaagagt aaagttgctc cgttgaaaaa      3540
     tctgactatt gctcggttgg agctgtgcgc ctgcgttcta gccgcgcact tgcatcaccg      3600
     cataaaaggt gccattgatg tggccgtaaa tgcatcatat ttttggaccg actcagctat      3660
     ctgcatgcat tggatcaagg cgccaccgag cacatggaaa acgtttgtgg caaaccgtgt      3720
     agcggaaatc cagcatttca ctagtggtgc caagtggagg cacgtagctg gagttgaaaa      3780
     ccctgctgat ttggtatcgc gtgggatgga ggtgtccgag ttcaacaaca gtcgagcgtg      3840
     gaggcatgga ccagcttggc ttgagcattc gcaggatgct tggcccatgc ccaatccaca      3900
     aagcattcct gaagtggcag agcaagagag gaaggagtta atttcggcag ttaccgtatg      3960
     ccacaacgaa ttgtttctgt attggtcatc ttatactcgc ctggtgaacg ttgtcagcta      4020
     ttgcatgcga ttcattgcca tgctccctca tctaaggcaa ttaagaggaa gaagagtttt      4080
     acgatcctcc gaggggaatg cgcaactgaa ggacgtttca tctcgtaaag ttctcagcgc      4140
     tcgggagcga gcagcagcag ttaatgcctt aacacgcctt gcccaacgtg agtcttttgc      4200
     tgaggagcta cgcgatctgc aaggaggaaa gagggtcaaa aaacaatcag agctgaaaag      4260
     actcaccccg tttgtggacg aaaagggtat catccgggtt ggtggacgac tgaatttgtc      4320
     acagctgccg tatcagtcga aacatcccgc actgctgccg aagggtcatc cattggctcg      4380
     attgattgct gagcatgatc acaagatgct tcttcatgga ggaggacggt tgctgctgtc      4440
     agtcatacga gagaagtttt ggcctttgaa cggaagaatg ttggtcaaaa gcgtagttcg      4500
     gagctgcata aaatgtattc ggtaccagcc tactcttgca gagcagcata ctggccagct      4560
     gcccgctgcc cgaattatac caagccggcc ctttgctgtt accggggtcg attatgcagg      4620
     tcccctgtac ctaaaacctg cgcataggcg cgcagcatcg ttgaaagcgt acctgtgtgt      4680
     cttcgtgtgc tttgcaacaa aggcggtgca tttggagcta gtgggagacc tgtcaactga      4740
     cggttttctc gcggctctac ggaggtttac ggcgaggaga ggtgttccgg atcatctcca      4800
     ttcggacaat gggaaaaact tcgagggagc gaggaatgag ctacgagagc tttttgcgac      4860
     tttgacgagt gaagctgcgc agagtaccat cgcttcatcg tgcgcggacc agggaatctc      4920
     ttggcacatg attccaccga gagctcctca ctttggcggc ctttgggaag ccgcggtgaa      4980
     aacggccaaa cgtcatctgt tccgtcacct cggaagtact cggctctcct tcgagggtta      5040
     ctacaccgta ctgcaccaga tcgaggcagc tatgaactct cgtcctctct taccgcttac      5100
     ggatgatccc aatgatttag ccgcactaac accttctcat tttttgatag gctcctcatt      5160
     aacggcactt ccggaccctg atatgacgat ggcacacact aatgcacatg agcacttggc      5220
     gaagctgcag ctattggtgc agaagttttg gaaacactgg caaaaggagt acttgcagga      5280
     gttgcaaaag gacccgcgcg ttgccaggca ggcagatcaa atccaacccg gtcgaatggt      5340
     tatcctgatg gacgagttgc tgcctagtac ccgttggccg ttagcgcgtg tgatagaggt      5400
     gcaccccggt ccggacgggc tggtgcgagt agttaccttg cgtacgataa aaggtttaat      5460
     taagcgtccg atagccaaaa tatgtccttt gccagtagaa gagagaggaa ataacacttt      5520
     gccagcagct acgtaaccga aatgtccgta tttgtcgatt taatgtttgt gcaccgcgct      5580
     tcgtcgttgt ataaagaaaa ccacgcggtt tatgtcaggt ctgagttagt gttagtgtta      5640
     gtgttgatgg tacatcaagg cgaggagta                                        5669
//
ID   BEL15-LTR_AG repbase;    DNA;    INV; 275 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL15-LTR_AG is a long terminal repeat of the BEL15_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL15-I_AG; BEL15-LTR_AG; BEL15_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-275
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL15_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 38-38 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL15-LTR_AG flank an internal portion of BEL15_AG (deposited as
CC   BEL15-I_AG).
XX
SQ   Sequence 275 BP; 73 A; 53 C; 56 G; 93 T; 0 other;
     tgtttacgtt ttttgttatt gttgcgtttt gacagctagg gctacgttca tccagcatat        60
     tgtgtgcgta ttttcactgg gtgaagcgtt agcgttcgtt tgaattgtct atgtattagt       120
     gttaggtccg ttaggctaag aacaaaattg tcaaccattg tcttaaaagg attcgtaata       180
     tactgacgcg tacgccaaac ggtcaccttt aaaccctaag catttttcac tgcactttaa       240
     cataaaatat cacaacgtag ggccgatcac gaaca                                  275
//
ID   BEL16-I_AG  repbase;    DNA;    INV; 5510 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL16-I_AG is an internal portion of the BEL16_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL16-I_AG; BEL16-LTR_AG; BEL16_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL16-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5510
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL16_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 39-39 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL16_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL16-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL16-LTR_AG
CC   LTRs. The BEL16-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 18 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1736-aa BEL16_AGp Bel-like
CC   protein
CC   (pos. 231-5438).
CC   BEL16_AGp is composed of the peptidase A16 (pos. 145-304), RING
CC   Zn-finger (pos. 335-400), reverse transcriptase and
CC   integrase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           231..5438
FT                 /product="BEL16_AGp"
FT                 /translation="MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRER
FT                 DRVVQSLTRIDTFLAQYKESDFPELTPRLDLLNERWREFQALARNIGAKDY
FT                 SEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQ
FT                 LTLPQFSGKYDEWLPYHDMFVVTVHENEKLSQVEKMLYLKGSLKGEALKVV
FT                 DTLQACNSNYDVAWDALKKRYSNEYILKKRHVNAMLQWPRMKVMNTVGIHG
FT                 LIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQQKWERHVEESEQ
FT                 KTVTDLLNFLRTQTRIMDAFAVDRPMAAGKSTSERRVASNVAAEAKCAKCD
FT                 GSHMVENCDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNIC
FT                 NRKHHSLLHGENVSETIGPSVREELPSTSGTQNVVVNASSNRECTSVLLST
FT                 AIVSVRACGNKWLSARALIDSGSQVNLMTKGLAARLKLPQYESKTALSGVG
FT                 HSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPM
FT                 NFVLADPNFDSDAEVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVF
FT                 GWVATGKVPLASEGSNYVTCGTCTRLDDLIERFWIIEEIREPLQHSQEERD
FT                 CEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNR
FT                 DPWLKQKYTAVINDYIDKGILVKVAANPDSEEAHGHYFLPHHPVIKASSTS
FT                 TKVRPVFDGSASTDGGKSLNDLLMTGPVIQENLLALLLKFRMRSVALVADI
FT                 KQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVTFGLAPSSFLAIRV
FT                 LQQLAIDEGENFPLARQALLEDFYVDDYIGGASSEEEAVRLQAELTLLLRK
FT                 GGFHLTKWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESD
FT                 QLYIDSNIQMNNESWSRRKVYSLVARIYDPLGLVAPVTSWAKINMQSLWLA
FT                 TDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRHAVVHNPVAVQLHCFSDA
FT                 SEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAA
FT                 RLQKVVRQALRIPDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQEL
FT                 THGYKWMHVKGVDNPADIVSRGAMPNELLASKLWFHGPGWLQLSEEEWKKN
FT                 ASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMRF
FT                 IRCCQRKLDPKHKGVLLVSELAEAKIRLVKREQRIYFAAEIKELSAGQTVR
FT                 PKSSLKTLGAFLDGDGLLRVGGRLHRAKAMQVCSRFPLALPKKSRFTRLMA
FT                 EYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCRGCLVCFRMNPALVQ
FT                 QPPGQLPVSRAMPARPFSIVGVDFCGPIYLKPVHRRAAAEKAYISIFVCFS
FT                 VKAVHIELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDD
FT                 FYTLMNSDSAVEDISRYAVGAGVKWHFIPPHAPNFGGLWEAAVKAAKRVLL
FT                 KVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLSEDPEELDVLTPGHFLIGA
FT                 PMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGK
FT                 AVVELKVGQMVLLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLY
FT                 KRPANRISLLPFERVN"
XX
SQ   Sequence 5510 BP; 1469 A; 1034 C; 1539 G; 1468 T; 0 other;
     ttggtgccgt gaccaggatg gtctaatatt tgcggtttgg tttgactggt taaagtgaag        60
     aactttgtgt gatttctttt ggcaaaaatc gcgtaacgcg tgtgaaatct gaaagttccg       120
     tatcgagcgt tggtggattt ctgaataaga aaaaatcgcg aaagcgtgag aaatcattgt       180
     gctagtgggt gttctttgcg tgtgtatgca ttttgtgtcg cgtattagaa atgtcggtta       240
     gtgaagattt tgccggtttt tctgacgcgt cgggttcgaa caatacaatg caatacacac       300
     aagcagaaga tctggatatg attatcctaa agcgcgagcg cgaccgagtc gtgcaatcgt       360
     tgacaagaat cgacacgttt ttggcgcagt acaaagagag tgatttccca gaattgacgc       420
     ctcgtctcga tctattgaac gagcgttgga gggagtttca ggctttggct cgaaatattg       480
     gcgcaaaaga ttacagtgaa gataacgatg tgctttatgg tgagattgaa gacaaagtca       540
     tgctattgaa aggaaaatta ttgggaaagc tgcgggctgg agcggagata ccgagtgtga       600
     aacaggaacg cgtgtgcgat gattataata gtgttcgttt gcctcagttg acgcttcctc       660
     aattttccgg aaaatatgac gaatggctcc cgtatcacga catgtttgtt gttactgttc       720
     atgagaacga gaaattgtcg caggttgaaa agatgcttta tttgaagggt tctctgaaag       780
     gtgaagcgct gaaggtggtg gatactttgc aagcctgcaa ttcgaattat gacgtagctt       840
     gggatgcttt gaaaaagcga tattctaacg aatatatttt gaaaaagcgt catgttaacg       900
     cgatgctaca atggccacgg atgaaagtca tgaacacggt gggtattcat gggcttatcg       960
     attgtttcga aaggaactta caaattctaa agcagttagg tgaagtgacc gaacagtggg      1020
     gatgtttgat tattcagata atcatttcaa agttggacga aagcacccaa caaaagtggg      1080
     aaaggcacgt tgaagaaagt gagcaaaaaa cggtgacgga tttgttaaac tttttgcgca      1140
     cacagacgcg cataatggac gcgtttgcag tggataggcc aatggcggcg ggcaaatcta      1200
     caagtgaacg tcgtgttgcg tctaatgtgg ctgcagaagc aaagtgcgca aaatgtgatg      1260
     gatcgcacat ggtggaaaat tgtgactcgt ttcggagttt aacgttgccg cgtcgtcgtg      1320
     aagtggttga agctaagaag ctttgcctta attgtttgag gcaagggcat tttcaagcca      1380
     agtgttggtc acgtgcgcga tgcaatattt gcaatcgtaa acatcattcc cttctacacg      1440
     gtgaaaatgt aagtgaaacg atcggtccgt cggttcgtga agaacttcca tctaccagtg      1500
     gcacgcaaaa tgtggtggtg aacgcgtcat cgaacagaga gtgcacttct gtgttattat      1560
     caacggcgat agtgagtgtg cgtgcgtgtg gtaacaaatg gttgtcagca agagcattga      1620
     tcgatagtgg gtctcaggtg aacctgatga caaagggctt ggctgcgcgg cttaagttac      1680
     cgcagtacga aagtaaaacg gcattatcgg gagttggaca ttcgaaagtg gacataacga      1740
     cgtcggtaac gactgtcata cgttccaaaa gttgtaacta tcaagaacgt atgcagtttc      1800
     tagtgttgcc gagaatttct agctacaggc cggtaactgg aaatcaaatt agcaggcaga      1860
     atctcccgat gaattttgtg ctcgcggatc ctaatttcga tagtgatgct gaagtggatt      1920
     tattgttggg ctccgaattt tacgcgactt ttttgaaacc ggacaaccgt ggtaaaatta      1980
     ggctcgagct accagcgctc ccaacattta ttagcactgt ttttggatgg gttgcaactg      2040
     ggaaagttcc gctggcttct gaaggtagca attatgttac ttgtggcacg tgtactaggt      2100
     tggacgattt aattgagcgt ttttggatta ttgaagaaat acgtgagccg cttcaacata      2160
     gtcaggaaga aagggattgc gaagcacatt ttgtgcaaac tcatcagcgg gatagtgaag      2220
     ggagatatat agtgaagctg ccatttaagt gtgacttaca gaaccaattg ggaccgtcca      2280
     gtgcgatagc gagaaaacgg ttcttgcagt tagaacgacg tttcaatcgg gacccatggt      2340
     tgaaacaaaa gtatacggcg gttatcaacg actacatcga caaagggatt ttagtcaagg      2400
     tggctgcgaa ccctgattct gaggaagcgc atggtcatta tttcttaccg catcatccgg      2460
     taatcaaggc gtccagtacc agtacaaagg tacgacctgt gtttgatgga tcggcctcta      2520
     ccgacggtgg taagtctctt aatgatttgt taatgactgg tcctgtgatt caggagaact      2580
     tgttggcgtt gttgctgaaa tttcggatga ggagcgtggc attagtggca gacataaaac      2640
     agatgtatct gcaagtcaag gtgcatcccg acgacactcg ttttcaacgt gtattatggc      2700
     gaggctcatc tgttgagtcc atcgaagtct acgagttgca gcgggtcaca tttggacttg      2760
     ccccgtcttc ctttctggcc attcgagtac tgcagcaatt ggcaattgat gaaggggaaa      2820
     actttccctt ggcgagacag gcgttgttag aggacttcta tgtcgatgac tacattggtg      2880
     gtgcctctag cgaagaagaa gcagttaggt tgcaagctga gctgacgcta ttgttgagaa      2940
     agggcggatt tcatctaact aaatggaatt ctaacaaacc agatgtttta tctagcgttt      3000
     cagcggaaga cagagcaaca tccaacgtta aaatgtttga agttccagag gagccaataa      3060
     aaactctagg tatcgcgtgg ctaccagaat cggaccaact gtacatagac tcgaacattc      3120
     agatgaacaa cgagagctgg tcccgtagaa aggtttactc tttggtagca cgtatatacg      3180
     accctttggg gctggtggct cctgtgacat cttgggccaa gataaatatg caatcgttgt      3240
     ggttggcaac tgatgactgg gatgaagaaa taccggctgt catgcaagaa cgatggtatg      3300
     cttttcaatc acaactcggg ttgctgaagg aggttaagtt ttcgcgccat gctgttgtgc      3360
     ataatcctgt tgctgttcaa ctacattgct tttcggatgc atctgaagcg gcttatgggg      3420
     catgcgtgta tgttagaacg attggtagca gcggggaagt ggtagttgag ttgcttgctg      3480
     caaagtctcg tcctgcgccg ctgaaaagag tcagtttggc ccggttagaa ctttgtggag      3540
     cattactggc agcaaggttg cagaaagtgg tacgccaagc gttgagaatt ccagacgtgg      3600
     aaacctttat gtggactgat gcgacaatcg tgttgcattg gattcgagca ccatcccatt      3660
     cttgggctac gtacgtagcg aatagggtat ccgaaattca ggaattgacg catggctaca      3720
     aatggatgca cgtgaagggc gttgacaatc ctgccgatat tgtatcgcgt ggagctatgc      3780
     cgaacgagct gttagcatcg aagctgtggt tccatggtcc cgggtggtta caactatcag      3840
     aggaagaatg gaagaagaat gccagcggtg tgttggcaat tcccgaagag gagttattgg      3900
     aacgaaggaa gagctcattg gtggccgcag taagtagcga gagcgatgat tggtgtgata      3960
     ggttttccaa ctatgacaaa ttactgcgga tcactgcgta ttgtatgaga tttattcgtt      4020
     gttgccaacg aaagctggat cctaaacaca aaggtgtttt gttggtgagc gagctagcag      4080
     aggcgaaaat tcgactggtg aaaagagaac aacggatata ctttgcggct gagatcaagg      4140
     agttgtctgc tggacaaacg gtacgtccca aatcatcact gaagacatta ggagcttttt      4200
     tggacggtga tggtttgctc cgagttggtg gccgcttgca tcgcgctaaa gccatgcaag      4260
     tttgtagcag atttccgttg gcgctaccca agaagtcacg atttactagg ctaatggcag      4320
     aatattatca tcgattggca cttcatggtg ggccaactgc aacattgagc gcactcagga      4380
     gagaattttg gccaattcaa ggacgatctt tggtcaatag tgtttgcaga ggctgtctgg      4440
     tatgcttcag gatgaatccc gcgttagttc aacaaccacc aggacagcta cccgtgtcgc      4500
     gtgctatgcc agctcgacca ttttcgatcg taggggttga tttctgtgga cccatttact      4560
     tgaagccggt gcatcgccga gcagcagctg aaaaagcata tatttcaatc tttgtgtgtt      4620
     tttcagtaaa ggctgttcac atcgagcttg tggagtctct atcaactcat gcatttctag      4680
     cggcgtttcg tcggtttgtg gcaagacggg gtttgcccag cgaggtctat tccgacaacg      4740
     gtctcaactt ccaaggagcg agtaaggtga tcgatgactt ctacacgttg atgaacagcg      4800
     attcggcggt ggaggatata tcgaggtatg ctgttggcgc tggcgttaag tggcacttca      4860
     tcccacccca tgcaccgaac tttggcggcc tttgggaggc agcggtaaaa gcggcaaaac      4920
     gcgtcctact gaaggttgtt ggtgatcggc agctggcgtt tggggagatg tcgacggtac      4980
     tggcacaagt ggaagctcaa ctcaacagca gaccgcttac accgttgtcg gaggatccgg      5040
     aagaacttga tgtattgacg ccggggcatt ttctaatcgg ggctccgatg aacgctctac      5100
     cggagcctga cgtgggtgat gtaccaatca atagattgaa gcggtatgag gaattgcgta      5160
     gagtggtaca gaatcattgg gcgcgttggc gtagggaata ttttagcgaa ctacataacg      5220
     aacatcaacg cggcaaggca gtagtagagc taaaggtagg acaaatggtc ctgttgaaag      5280
     aggatgggaa gactcctcac cattggccaa tgggacggat tgctgaggta tttcctggcc      5340
     cagatggcgt agtgagagtc gttagtatca ggactaggaa cggcttgtat aagaggccag      5400
     cgaataggat tagtcttctt ccgtttgaga gagtgaatta gatatcataa agtcaggcat      5460
     tttgtgaagt aatggaaaga ggtaaatttg gtaaatttag gtggccgcta                 5510
//
ID   BEL16-LTR_AG repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL16-LTR_AG is a long terminal repeat of the BEL16_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL16-I_AG; BEL16-LTR_AG; BEL16_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-287
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL16_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 40-40 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL16-LTR_AG flank an internal portion of BEL16_AG (deposited as
CC   BEL16-I_AG).
XX
SQ   Sequence 287 BP; 85 A; 51 C; 75 G; 76 T; 0 other;
     tgttggaatg taagggttat gaaacggtca ttttgaattg tttgcggttg ttttgtcagt        60
     tgggaattaa aagttaaatg tattttctgg cagcactgcc gatcgacaat ttgtgattaa       120
     gtatgtgtgc gaataaagcg gcactagcgc atgaaactcg atacgagccg gacgtgttct       180
     ttactttgtc tcctttggcg atcgaagacg acacaacaaa acacaacgta gggcgtagag       240
     gcgtcaaggg ggaaaggaac caacaaacca tgttccagaa cgcaaca                     287
//
ID   BEL17-I_AG  repbase;    DNA;    INV; 5596 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   18-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL17-I_AG is an internal portion of the BEL17_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL17-I_AG; BEL17-LTR_AG; BEL17_AG; Bel clade; PHD Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL17-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5596
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL17_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 41-41 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL17_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL17-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL17-LTR_AG
CC   LTRs. The BEL17-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 11 copies; they are ~2% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1842-aa BEL17_AGp Bel-like
CC   protein
CC   (pos. 34-5559).
CC   BEL17_AGp is composed of the PHD Zn-finger (pos. 9-56), peptidase
CC   A16
CC   (pos. 223-353), reverse transcriptase (pos. 839-1006) and
CC   integrase (1540-1700) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..5559
FT                 /product="BEL17_AGp"
FT                 /translation="MGPKRNDHCQACGDQRDDPDFVACDKCNLWWHFSCAG
FT                 LTEPAEAVEQRKWLCVACQAKERSGLIQRTPVKHTEQMEAANANLNLEEVT
FT                 QNVAEKHNLKLVEVIQQAAETPMPSSSGTSYNAVSKPNLTPAKVSDSVANR
FT                 LAIMKRRQEAERKRMELELQLKFVKEEEDLLSEELGVMAISGASTVTPSRP
FT                 DGESMRGSQQDERGPAPRLESFHRNVPTELPEFSGDPAEWPVFIAHYDYTT
FT                 EKCGFSNWENMIRLQKALKGPALEVVRSRLVLPEVVPQVIATLRSRYGRPE
FT                 HLISALIGKMRRMPAPCREKPDTVVAFGEAVRSMVDHMQAAGLRAHLTNPL
FT                 LLQEIVERLPTSEQYSWARHIRGVTEPDLIVFGEFMTEWMDDAETLTRLDS
FT                 PSLKAVDRKKPNTKGYVHAHVENQGATTSGTRAIQVGQSCFVCNKRGHLVS
FT                 KCFAFGAMAVKDRWRKARALSLCFSCLERHNWRTCQNRAVCSIGGCTRRHH
FT                 ALLHGAEESREIGSEQNNIESREGGIDGGVIAESNHHQYVSSSSKALFRIV
FT                 PVTVYGPAATVTTFAFLDEGSSMTLVDDDLAEQLGVEGKVEPLCIRWTGNT
FT                 TRVEAGSRRVNLKVGPVGSTKRFAIHSVRTVPGLNLPRQSFVQDEGRWQHL
FT                 ERLPIRQYRDAEPKLLIGLDNLRLAVPLRTKEGGVGDPIAVKTRLGWCIYG
FT                 KPANLECERLLHICECNDQGNIHETIREYFDMQLIGAAHGVEQDPDERRAK
FT                 QILDTTTARIGKRFESGLLWRKDDIELPPSIDMARRRFNCLERRMERDGHL
FT                 KEQVHRQIRDLLSKQYVHKATLRELEEADQRRVWYLPIGVVTNPNKPGKVR
FT                 LIWDAAAKAHGTSLNDMLLKGPDELSSLLGVLFRFRLYAVAACADVKEMFL
FT                 QIMIRKEDKHAQRFLWRYEPTDELETYIVDVVMFGSACSPATAQYVKNRNA
FT                 REHMEQFPRAVEGIIESTYVDDFLDSFETEEEACQVSHDVREIFRNGGFEL
FT                 RNWTSNSMELMRCLGEANGDIKCLSSMGDEAERVLGMRWNPASDELGFCTR
FT                 ACTTVSDLLIAERIPTKREVLRCVMSLYDPLGLLAMFVIHGKILIQDLWRT
FT                 GTQWDEEINDMQLRHWRRWIDLLPAIADLRIPRSYFAAASKKMYENGEWHL
FT                 FVDASQHAYACVLYLRIFDDAGEPQCTLIGGKAKVAPLKPLTIPKLELQAC
FT                 VLGARFLRYTQEHHPINVRRRVLWSDSTVALSWIRSDPRNYKPFVAHRVVE
FT                 ILESTSVDEWRWVPTDHNPADEATKWKGKPNFDFGGNWFQGPEFLLHGEDD
FT                 WPSQRHNSDNPSEEIRQVNLHVEDSNTGLLPIRYERFSRLERLQRMIGWIV
FT                 RYVGNLRRKYRGEPILGGALRQEELYEADKILWRQTQLEYYPEEVRILSLD
FT                 DNDGKPGGRTVSKQSHIYHLLPFVDDEGVLRMRGRIGAAADVPYSAKYPVI
FT                 LPRGSRLAELIVERYHRLYRHANNETVTNELRQQFQIPKLRALVTKTVKNC
FT                 VFCKIRRSLPQVPPMAPLPKERLTPFVRPFSYVGLDYFGPVLVKRGRSNEK
FT                 RWIALFTCLTVRAIHLEVVHSLSTESCVLAVRRFVARRGAPVEIFSDNGTN
FT                 FLGASRQLRREIEERNETLAAIFTNAHTRWTFNPPGAPHMGGVWERMVRSV
FT                 KAAISTVMEAKHAPDDETFETVILDAEAMINSRPLTYVPLDPENQEAITPN
FT                 HFLLGSSSGVKQQPVLPTNYRDSLKGNWKLAQHMLDGIWRRWIKEYLPVIS
FT                 RQSKWFENVREIRKGDLVLVVDGTIRNQWKKGIVERIMAGPDGHIRQAWVR
FT                 TNTGAVRRPVAKLALLDIAT"
XX
SQ   Sequence 5596 BP; 1465 A; 1184 C; 1717 G; 1230 T; 0 other;
     ttaaaaagcc tttaaaacgg ttccaaaggt gaaatgggcc caaaaaggaa cgatcactgc        60
     caggcttgcg gtgatcagcg ggatgatccg gattttgttg catgtgacaa gtgcaattta       120
     tggtggcatt tttcgtgcgc cggattgacg gaacccgcgg aagctgtgga acagcggaaa       180
     tggttgtgcg tggcttgcca ggctaaggaa cggtccggct tgattcagag gacgccggtc       240
     aagcacacag aacaaatgga agcggcaaat gctaacctca atctggagga ggttacgcaa       300
     aacgtggctg agaaacataa cctcaaactg gttgaggtta tccaacaagc ggcagaaaca       360
     cccatgcctt cttcaagtgg gacaagctac aacgcggtga gcaaacctaa cctcactcct       420
     gctaaggtat ccgacagtgt ggctaatcgg ctagccatta tgaagcggcg gcaggaggcg       480
     gagaggaaac ggatggagct cgagttgcag ctgaagtttg tgaaggagga ggaggacttg       540
     ttgtccgagg agttgggtgt gatggcgatt tcgggagcat cgactgtgac accgtcccgg       600
     ccggatggag aatcgatgcg aggctcgcag caggatgagc gtggtcccgc cccgcgactg       660
     gaaagttttc atcgaaacgt gccaaccgaa ttacccgagt tttcagggga cccggcggaa       720
     tggcccgtat ttattgcgca ctacgattac acaacggaga aatgtggttt ttccaactgg       780
     gaaaacatga tacggctgca gaaggcgctc aaaggacctg cgctagaagt tgtgcgaagc       840
     cgtttagtgc taccggaggt ggtgccacaa gtgattgcga cgctgcgatc gcgctatggt       900
     cggccggaac atctcatttc agcgctgatt gggaaaatgc gtcggatgcc tgcaccttgc       960
     agggagaagc ccgatactgt tgtggcgttc ggcgaggcag tgcggagcat ggtagatcac      1020
     atgcaggctg ctggtctacg ggcacacttg accaacccgt tgctgctgca agagatcgtg      1080
     gaaaggttgc cgacgagcga gcagtacagc tgggcacggc acatacgagg cgtgacggaa      1140
     ccggatctta tcgtgtttgg cgaattcatg acggaatgga tggacgatgc tgaaacgtta      1200
     accaggctgg attcaccctc attgaaagca gtagacagga agaaacctaa caccaagggt      1260
     tacgtgcatg cgcacgtgga aaaccaggga gcgaccacat cgggaacaag agccatccag      1320
     gtaggacaat cttgttttgt gtgtaacaaa cggggacacc ttgtgagcaa atgcttcgcg      1380
     tttggagcaa tggcggtgaa ggaccgctgg cggaaggccc gtgcactttc tttatgtttt      1440
     agctgtctgg agcggcacaa ctggcggacg tgccaaaaca gagcggtttg cagcattggt      1500
     gggtgcacgc gccgacatca tgcgttgcta cacggcgctg aggagtctcg cgagatcggc      1560
     agcgagcaga ataatataga aagccgtgaa ggaggaatcg atggtggtgt cattgcggag      1620
     agtaaccatc accaatacgt gtcatcatca tcgaaggcgc tatttcgaat agtgcctgtc      1680
     accgtgtatg gaccggctgc tacggtgacg acgtttgcgt ttttggatga aggctcgtcc      1740
     atgacgctgg tggatgacga tttggctgaa caattaggtg ttgagggcaa ggtggagcca      1800
     ctttgcatcc gttggacagg caacactaca agggtcgagg ctggatccag acgagtaaac      1860
     ctgaaggtgg gacctgttgg ttctacaaag cggtttgcca tccactcggt acggactgtg      1920
     ccagggctaa acctacctcg acaatccttc gtgcaggacg aagggagatg gcaacatttg      1980
     gagcggctac cgattcggca atatcgggat gcggaaccca agctgcttat tgggttggac      2040
     aatttgcggt tggcggtccc tctcaggact aaggagggag gcgttggtga tccaatcgca      2100
     gtaaagacac gccttgggtg gtgtatttac ggaaaaccgg cgaatctgga gtgtgaacgg      2160
     ttgttgcata tttgcgagtg caacgaccaa ggtaacattc acgagacgat tcgggaatat      2220
     ttcgacatgc agttgattgg tgctgcacac ggcgtcgaac aggatccaga tgagcggcgt      2280
     gcgaagcaga ttctggacac taccacggca cgaatcggga agcgattcga atcgggatta      2340
     ctgtggagga aagatgacat cgagctacct cctagcatcg acatggcgcg tcgtaggttc      2400
     aattgtttgg agaggaggat ggagcgagat ggacatctta aggaacaagt acatcgccag      2460
     attcgagatt tgttgagcaa gcagtacgtt cacaaggcta cgttgcgtga gctggaggag      2520
     gctgaccagc gacgcgtatg gtacctacca ataggggtgg ttaccaaccc aaataaacct      2580
     ggaaaggttc ggctgatttg ggacgcggca gctaaggcgc atggaacatc gttgaacgac      2640
     atgctgctga agggaccaga cgagctgagc tcgttacttg gcgtactctt ccgatttcgt      2700
     ctgtacgcag tggcggcgtg tgcagacgtg aaggagatgt ttttgcagat tatgatacga      2760
     aaggaagaca aacacgcgca gcgtttcttg tggcgttacg aaccaacgga cgagttggaa      2820
     acctacatcg tggatgttgt aatgttcggg tctgcgtgtt cacccgcaac ggcgcagtat      2880
     gtcaagaacc gaaacgctcg agagcacatg gaacaattcc cacgagcggt ggagggaatt      2940
     attgaaagca cttacgtaga tgactttctg gacagcttcg agacggaaga agaagcatgt      3000
     caggtatccc atgacgtaag ggagattttt aggaacggcg gatttgagtt gaggaattgg      3060
     acctcaaaca gtatggaatt gatgagatgc cttggcgaag caaatggcga catcaaatgt      3120
     ttatcatcca tgggagatga ggcggaacga gtattgggaa tgcgatggaa ccctgcatct      3180
     gacgagcttg gattttgcac tagggcgtgc acgacggtgt ctgacctctt gatagcagag      3240
     aggattccaa cgaaaagaga ggtattgcga tgtgtgatgt ctctttatga tcctcttggg      3300
     ctgcttgcga tgttcgtgat ccacggcaag atcctgatac aagatctttg gcgaactggc      3360
     acgcagtggg acgaagagat taacgacatg cagttgagac attggcgtag atggattgat      3420
     ctgcttccgg caatagcaga cctacgcatt ccgcgcagtt actttgcggc agcatcgaag      3480
     aagatgtacg agaatggcga atggcatttg tttgtcgatg caagtcagca cgcttatgca      3540
     tgcgtcttat atctgaggat atttgatgat gctggagaac ctcagtgtac actcatcggt      3600
     gggaaagcta aggtggcgcc actgaagcca cttactattc cgaagcttga gcttcaggct      3660
     tgcgtgttgg gagcgagatt tttacgctac acgcaggagc atcatccgat taatgtgaga      3720
     cgacgagtgc tttggtcgga cagcacagtt gcgttgtcgt ggataaggtc ggatccaaga      3780
     aactacaaac ccttcgtggc tcatagggtg gtcgaaatac tggagagcac atcggttgac      3840
     gagtggagat gggtgcctac tgaccacaac ccggcagacg aggccacgaa gtggaaggga      3900
     aagccgaatt tcgactttgg tggcaactgg tttcaagggc cagagttctt actccatggg      3960
     gaggatgatt ggccatcaca gaggcacaac agcgacaacc cgtcagaaga aatacgacag      4020
     gtaaatcttc acgtggaaga ctctaacacc ggactattac ctatccggta tgaacgtttt      4080
     agccgattgg agaggctaca aaggatgatt ggttggattg tcaggtatgt gggcaatctg      4140
     agacgaaagt atcgtggcga acctatttta ggaggtgctc tacgacaaga agaactctat      4200
     gaagcggata agattctgtg gaggcagaca caactcgagt actatccgga agaagttcgc      4260
     attctgagtt tggacgataa cgatggaaaa cctggaggaa gaacggtatc aaagcaaagc      4320
     cacatttacc atctattgcc gtttgtggac gatgaaggcg tattgcgaat gcgaggaagg      4380
     ataggtgcag cggctgatgt tccttattct gctaagtatc ccgttatact gccgaggggt      4440
     tcccgactgg ctgagttgat agtagagcgg tatcatcgat tgtatcgtca tgcgaacaac      4500
     gaaacagtga cgaatgagtt acggcaacaa tttcagatcc cgaagctgag agcgttggta      4560
     acgaagacgg tgaagaactg tgtcttctgt aagatcaggc ggtcactacc acaagtgccg      4620
     ccaatggcac cgttaccaaa ggagaggctc acgccctttg ttaggccatt cagctacgtc      4680
     gggctggatt actttggacc agtgttggtc aagagaggaa gatcgaacga gaagcgttgg      4740
     atcgctttat tcacgtgttt gactgtgcgc gcgattcact tggaggtggt gcacagtcta      4800
     tcgacggaat cgtgcgtgtt ggcggttaga cgatttgtgg ctagaagagg tgcaccggta      4860
     gaaatcttca gcgacaacgg gaccaatttc ttgggtgcta gcaggcagct gcggagggag      4920
     atcgaggagc gcaatgaaac tctggcggcg attttcacga atgcgcacac ccgttggacc      4980
     ttcaacccac ctggcgctcc acacatgggc ggcgtgtggg agcgtatggt acgctctgta      5040
     aaagcggcga ttagcacggt gatggaggca aagcacgcac ccgacgacga gacgtttgag      5100
     acagtgatct tagacgcaga ggcgatgatc aactctagac cgttgactta tgttcccttg      5160
     gacccggaga accaagaggc aatcacaccg aatcatttcc tgttggggag ttcttcaggt      5220
     gtaaagcagc agccagtgtt acctacgaac tatagggata gcttgaaggg aaattggaag      5280
     ttagcgcagc atatgctcga cggaatatgg aggcggtgga ttaaggaata tttaccggtg      5340
     atctcgcggc agagtaagtg gtttgaaaat gtgcgggaaa ttaggaaagg agatttggta      5400
     ctggtagtgg acggaacaat caggaaccag tggaagaaag gaatagttga gcgaattatg      5460
     gcaggacctg atggtcatat aaggcaagcg tgggtacgca ccaatacagg agcagttagg      5520
     aggccagtag ctaagctagc actgctcgac atagcaactt agggtgacca aatatggttg      5580
     gtcacgggcg ggggaa                                                      5596
//
ID   BEL17-LTR_AG repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL17-LTR_AG is a long terminal repeat of the BEL17_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL17-I_AG; BEL17-LTR_AG; BEL17_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-276
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL17_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 42-42 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL17-LTR_AG flank an internal portion of BEL17_AG (deposited as
CC   BEL17-I_AG).
XX
SQ   Sequence 276 BP; 85 A; 46 C; 68 G; 77 T; 0 other;
     tgttaggaaa aggcagtgct attgatgagt ccaacccgga cgtataaacg agatgaagtg        60
     aaatgacagc tagggaaagt gacagatgaa atgacaggga aacggttgca cgcgcttcaa       120
     accagtagcg agtgaagcga gcagcaggtg acaccgtttt aaagttttat tgctatttta       180
     tttggattta tttgtatttg tcttcaggag aataaatagt taaactaaaa ctttcgcctt       240
     gtggctgtac gctctcgcac tcaaactgtg tttaca                                 276
//
ID   BEL18-I_AG  repbase;    DNA;    INV; 6242 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL18-I_AG is an internal portion of the BEL18_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL18-I_AG; BEL18-LTR_AG; BEL18_AG; Bel clade; integrase;
KW   peptidase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6242
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL18_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(4), 67-67 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL18_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL18-I_AG, an internal portion of BEL18_AG is flanked by
CC   BEL18-LTR_AG
CC   LTRs. The BEL18-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 4 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1985-aa BEL18_AGp Bel-like
CC   protein
CC   (pos. 183-6138).
CC   BEL18_AGp is composed of the peptidase A16 (pos. 360-450),
CC   reverse transcriptase (pos. 970-1149) and
CC   integrase (pos. 1680-1830) domains.
CC   BEL18_AGp:
CC   MEHEHExKAPPAVAQTNESQQPETGALDHRPLAPAADSLHFRSFAPTGQDWTVNSSLEIVDRARSSTPNA
CC   PLGAGLLLRxPQQRLTSEVREAPASRYTPLANSTVADLGxLHRSSSETVPRLAHLPTTADVQQPAPSQGG
CC   VSAGTVPRAADGASGAAIEDMELxPQAQDGASAGTVLRTAVGASGAAISNVHQPTPSQTGTPGRTMADKL
CC   AESSEAVAALELRMRNLTRRKLELERRELEFEEQLILAESKRIGDGFISMIDDEGESNKMVDWSRRGDSE
CC   GHSSHHPNVSPSSSRTVPPGNAQQGNDSVVSQQRQPRSGEYLNIADGAVDTYPFRNSIGTTLMNVNQSQI
CC   LARKASCKELPYFSGKPEEWPIFIATYETSTAACGYSDEENTLRLQRALKGKALEAVQPCLLHASNLTSV
CC   IETLRMLYGRPEIIVHSLIHRIHQMPAPRIERLETVIDFGMAVRNMCATITASGLEEYKCNVALMHELVE
CC   KLPHALRLDWARHRMQSSSATLSEFGKWIETQVKAASLITLPSLEFRPERKLDHKSRTHHMNIHNATGLV
CC   SEGSQICLLCEATCVDLSQCEQFNRLNVNDRWATIRRLNACRKCLKIHTYGCKGKKACGKNGCEYLHHEL
CC   LHNPERHSKPNEYAVATASLNAHSEVTGDVFLKYIPVIVYGRDKAITTFAFFDSGSTGTFIEHSLIEELG
CC   LEGQPHPLCLKWTGNSERDETGSIRVSLLEISGVGQNSSVHIIPKVHTVQSLSLPAQTLAVTQLTKQYAH
CC   LQGLPIHAYENARPRLLIGIDNHHLVRPTRYAEGGKYEPVAAKTSLGWIVYGPRNKNSNSVNIQAIHTIH
CC   ICNCGADAEANLDAAVKNFFTLESLGIVKPLETLRSKDDERALGILNAESKFNGKHYESGLLWRFDDVKL
CC   PCSRDMAMRRYKCLQKRMSKDSVLAKAVIEKMRDYERQGYIRRLSPEELSMKGSRDWFLPIFPVFNANKP
CC   GKVRVVFDAAAKVQGVSLNTYLLNGPDLLAGLLSVLYKFREHRVAIVGDIKEMFFQVRMKPDDQRSQMIL
CC   WNENDFTGSEPDVYAVAVMTFGAACSPSTAQFIKNLNADRFADKYSRAVKCIKEEHYVDDLLASAETDEE
CC   IITLAEQVRHIHAEGGFEIRNWLSNSHRVTSHLQREASPEDKINMCSDDRTEKVLGMWWDTLTDTFTFKL
CC   SPKHDIQLLSGGRMPTKRDVLRTVMAIYDPMGIIANFLMYVKILMQEIWRAGLGWDDVLSGRLAEKWSVW
CC   VAVLPTISQVRVPRCYRQFTSVNAKIQLHVFCDASENGMAAVAFFRFNDGGIIECSLVGAKTRVAPIKFV
CC   SIPRLELQAAVIGARFAAAIIAQHRIAIERIFYWTDSRDVICWMRSDHRRFSQFVAFRVGELLETTSVHE
CC   WRWLSTKLNVADDGTKWQKVPTADPDSRWFRGPDFLWKPECEWPVPEQYPTDTKEELRLHMMHHNTNTKP
CC   WIQLERFSSWNRLLRSVVYVLRFVSFIVSKRTARTTGPLTQGELEKAEYAILRLAQRDAFSQEIRRLTDA
CC   RDASEQRCTWKSVLPKTSILAKLSPEVDDNGVLRMRGRLTNCPWVSESTKRPVILPRQHQVTALILADFH
CC   RRFQHINHHAAINAIRSKLYIPRLQAEFNRIRRTCQHCKNRDAKPEPPEMGNLPSERLAAYQKPFSFTGV
CC   DYFGPVTVAVGRRVEKRWGVLFTCLTTRGIHLEAAHSLTTSSCILAIRRFIARRGQPLEFISDNGTNFVG
CC   ASRELAEAWEAIDKQRLAEEFTTPRLAWKFIPPGGPHFGGCWERLVRSVKKAMSEIRMSRLPTDEVLTTA
CC   LTEIEAMLNSRPLTQVPLDSESELPLTPNHFLLGTANGEAPKAVFSDDIATLKTTWKVSEVMANLFWKKW
CC   VAYYLPTLTRRVKWHHQVRPIKEGDIVVIVDPNLPRNTWPKGRVVAVIQSKDGQVRRATVATSTGIYERP
CC   ATKIAVLDVQQENNTYPPETNSxQH.
XX
SQ   Sequence 6242 BP; 1701 A; 1509 C; 1620 G; 1397 T; 15 other;
     ttttaaaaaa attccacgtt tggaaatttt acgcgtttac gcgagtgcgt gagtgaaccg        60
     tgtcgcaaga cagttgaggc cgcgaaacac ctaggaacgc gaccaacaga cgatacgtcg       120
     gacggcraga gaatagttga ggtgtacgtt acacattaca ccaacatacg caatttctca       180
     ctatggaaca cgagcacgaa tygaaagcac ctccagcggt agcacaaacg aacgagtctc       240
     agcaacctga aacgggagca ctggatcata ggccactygc accggccgcg gattcacttc       300
     acttccgatc gttcgcgccg actggacaag attggacggt taactcgtct ttggagatcg       360
     ttgaccgcgc aaggtcatcg accccgaacg caccattagg tgcaggattg ttgctgaggg       420
     raccgcagca acggttgact tcggaggttc gcgaagcccc tgcatcgcgg tacacaccgc       480
     ttgcaaactc tactgtggca gacctggggm ctttacatcg ctcatcctcg gaaaccgtgc       540
     cacggttagc gcacctaccg accactgcgg acgtrcaaca accagcgcca tcgcagggag       600
     gcgtttctgc aggaaccgtg ccgcgggcgg cggacggtgc atctggagcg gccatcgagg       660
     acatggaact acsaccgcaa gcgcaggacg gcgcttctgc gggaaccgta ctgcggacgg       720
     cggtcggcgc atctggggca gccatttcga acgttcatca gccgacgcca tcgcaaaccg       780
     gcacacccgg gaggacgatg gcggacaagc ttgcggagtc gagcgaagct gttgccgcct       840
     tggaacttcg gatgcgaaat ttgactcgac gaaagctgga gcttgagaga cgagagctgg       900
     agtttgaaga gcagctgatc ttggctgaat cgaagaggat cggcgatggc ttcatcagca       960
     tgattgacga cgaaggtgag tcaaacaaaa tggttgattg gtcgagacgt ggggatagtg      1020
     aggggcatag ttcacaycat ccgaatgtgt caccttcttc atcgcgtact gtgcctccag      1080
     gaaacgcaca acagggaaat gattcagtgg tcagtcagca gcgtcagcct agaagtggag      1140
     aatatttaaa tattgctgat ggggcggttg atacttaccc gttccgtaac agcatcggaa      1200
     ccacgttgat gaatgtcaac cagagtcaaa ttctggctcg aaaggcaagc tgcaaggagt      1260
     taccgtattt ttccggcaaa cccgaggagt ggcccatttt tatcgccaca tatgaaacct      1320
     cgacagctgc ttgtgggtac tccgatgaag agaacacttt aagactgcag cgggcgctta      1380
     aaggcaaagc tcttgaagcc gttcaaccat gtttgcttca tgcctctaac cttactagtg      1440
     tgatagagac gctgcgcatg ttatacggtc gcccggagat aattgtgcat tcgttaatcc      1500
     accgcataca tcaaatgcct gcaccacgaa tcgagcgctt ggaaactgta atcgattttg      1560
     ggatggcggt ccgaaatatg tgtgccacta taaccgcttc ggggctagaa gaatataagt      1620
     gcaacgtggc attaatgcac gagttggtag aaaagttgcc tcatgcgctt cggctagact      1680
     gggcacgaca ccgtatgcaa tcgagctccg cgacactctc ggagtttggc aagtggatag      1740
     aaacccaagt taaggcagct agtctgataa cattgccatc cctagaattc aggccagaga      1800
     gaaaactcga ccataagagt agaacgcatc acatgaacat acataacgct acggggttgg      1860
     ttagtgaagg aagtcaaatt tgtctactgt gtgaggccac ttgtgttgac ctktcgcagt      1920
     gtgagcagtt caacagacta aatgtgaatg atcgatgggc aactatacgc agactgaatg      1980
     cttgtcggaa gtgtctgaaa atacacacct acggctgcaa agggaaaaag gcttgcggga      2040
     aaaatggttg cgagtayctg caccacgaac tattacacaa tcccgagcgc cattcaaaac      2100
     caaacgagta cgcggttgcc acagcatcac tgaacgcgca ttctgaggtt accggtgatg      2160
     tatttttaaa atacatccct gtaatagttt acgggcgaga caaggccatc acgacctttg      2220
     ccttttttga cagtggatct accggtacct tcatcgagca tagcctaatt gaggarctcg      2280
     gtctggaagg acagccccat cctctgtgcc tgaagtggac aggtaactcg gaacgcgacg      2340
     aaacgggttc aattcgcgtg tcacttttgg agatttcagg agtcgggcaa aacagcagtg      2400
     tacatattat yccaaaggtg cacacggtgc aaagcctttc tctaccagcc cagactctgg      2460
     cagtgacaca actgactaaa cagtacgcgc atctacaggg tttrccaatt catgcgtacg      2520
     aaaacgctag gcctcgattg ctcattggta tcgacaacca tcatttggtt cgaccgactc      2580
     gttacgcgga aggtgggaaa tatgagcccg ttgcggcaaa gacgtcattg ggatggatcg      2640
     tatatggccc acgtaayaag aactccaaca gtgttaacat acaagcaata cataccatcc      2700
     acatatgcaa ctgcggcgca gatgcagagg ccaatctgga cgcagcggta aaaaactttt      2760
     ttacgctcga atcgctcggt atcgtcaaac cgttggaaac acttcgttca aaggatgatg      2820
     agcgagcgtt ggggattctc aacgcggaat cgaaattcaa cggaaagcat tatgaatccg      2880
     gattgctgtg gcgtttcgac gatgttaagt tgccatgctc tcgtgacatg gctatgagaa      2940
     gatacaaatg cctgcaaaaa agaatgtcga aagattctgt attagctaag gcagtcattg      3000
     agaaaatgag ggactatgaa aggcagggtt atatacgacg attatcgcct gaagaactgt      3060
     cgatgaaagg ttcccgagat tggtttctgc ccatatttcc ggttttcaat gcgaacaaac      3120
     caggcaaggt tcgagtagtt ttcgacgcag cggcgaaggt tcagggtgtt agcctcaaca      3180
     catatttact aaatggacca gatctgttgg cagggcttct atccgtatta tataaattcc      3240
     gtgagcatcg tgtggccata gttggggata ttaaggaaat gtttttccaa gtccgtatga      3300
     aaccagatga tcaacgatcc cagatgattt tatggaacga gaacgacttt acaggtagcg      3360
     aaccggatgt ctatgcagtt gctgttatga ctttcggtgc tgcgtgttcg ccgagtaccg      3420
     cacagttcat taaaaatttg aacgcagacc gttttgctga caaatattca cgggctgtaa      3480
     aatgcataaa ggaagaacat tatgtagacg atcttttggc cagcgctgaa actgacgaag      3540
     aaatcatcac gttagctgaa caagtccggc atatccatgc tgaaggtggt ttcgaaatcc      3600
     gaaactggct gtctaactca catcgtgtga catctcacct acaacgcgag gcatcacccg      3660
     aagacaagat aaacatgtgc tccgatgatc gcaccgaaaa ggttttgggt atgtggtggg      3720
     atacgttaac cgacacattt actttcaaac tatcccccaa acacgatata cagctgctat      3780
     ctggaggacg gatgccaaca aaacgcgacg ttctgcgaac agtgatggcg atttacgatc      3840
     caatgggaat catcgcgaat tttctcatgt acgtaaaaat tcttatgcag gaaatttggc      3900
     gtgctggcct tggatgggat gatgtgttgt ccggtcgact agccgaaaaa tggagcgttt      3960
     gggttgcggt attgccgact atttcacaag tacgtgttcc taggtgttat cgtcagttca      4020
     cttcggtaaa tgcaaaaata cagcttcatg tattctgcga tgccagcgag aacgggatgg      4080
     ctgcagtggc gtttttccgt ttcaacgatg ggggtattat cgaatgctct ctggtgggtg      4140
     ccaaaactcg cgtagctccg attaagtttg tatccatccc gcgcctagaa ctacaggccg      4200
     cagtcatcgg agcccgcttt gctgcagcga ttatcgccca acaccgaata gccatcgaac      4260
     gcattttcta ctggaccgat tcacgtgacg tgatatgctg gatgcggtct gatcatcgcc      4320
     gatttagtca gttcgttgct ttccgagtag gcgaactcct ggagacgact tctgtgcatg      4380
     agtggcgctg gctatcaaca aagttaaacg tagctgatga tggaacgaag tggcagaagg      4440
     taccaactgc agatcccgat agtcgctggt tccgcggacc ggacttcttg tggaagcccg      4500
     agtgtgagtg gccagttccc gaacaatatc ccaccgacac gaaggaagag ttacggctac      4560
     acatgatgca tcataacaca aacacgaagc catggattca gctcgagcgt ttttcatcct      4620
     ggaatcgctt gttaaggtca gtagtgtacg tcttacgatt tgtctccttt atcgtttcta      4680
     agagaacggc tagaacaaca ggaccgctaa cacaaggcga gcttgaaaaa gcagaatatg      4740
     ccattcttcg cttggcacag agggatgcct tttcacagga gatacgacga ttaaccgacg      4800
     cacgtgacgc aagcgaacaa cgttgcacat ggaaatccgt gttgccgaag acgagcatac      4860
     ttgcaaagct gtcccccgag gtcgatgaca acggagtact gagaatgcgc ggacgcctga      4920
     ccaattgtcc ttgggttagc gaatctacca agcggcccgt gatcctgcca cgacaacacc      4980
     aggtgacagc actaatttta gcagattttc atcgtaggtt ccagcatata aaccatcacg      5040
     cggcaataaa tgcgatacga agcaagctat acataccgag actgcaagcc gaattcaatc      5100
     gtatccgtag gacatgtcag cactgcaaaa accgtgatgc caagccagag cctccagaga      5160
     tggggaacct tccctccgag cgtcttgctg cttatcagaa gccgttctca ttcacgggcg      5220
     tcgactattt tggcccggta accgtagcag ttggtcgacg agtcgaaaaa cgttggggcg      5280
     ttctcttcac ctgcctcacc accaggggca tccatctaga ggctgcgcac tccctgacca      5340
     catcatcatg catcttagct atacgtcgtt tcatcgctag gcgtgggcaa cctttggaat      5400
     tcatcagcga caacggtacg aacttcgtcg gtgcatcgcg agagcttgct gaggcctggg      5460
     aagcgataga caaacagcgt ttagcggagg agtttacaac accgcgtctc gcgtggaaat      5520
     ttatcccacc tggtggacca cactttggag gctgctggga acgactagtg cgatccgtca      5580
     agaaggcgat gagcgaaata cggatgtctc ggctaccaac cgacgaagtg ttaacgacgg      5640
     cattaacgga gatcgaagcg atgcttaatt ctcgccctct tacacaggta ccacttgaca      5700
     gcgaatccga gcttccttta accccgaacc actttctgct agggacagct aacggagagg      5760
     caccgaaagc agtattcagt gacgacatcg ctaccctaaa aaccacatgg aaggtatcag      5820
     aggttatggc caatctcttc tggaagaagt gggtagcata ctacttaccg accttaacgc      5880
     gcagagttaa gtggcatcat caggttcgtc cgattaagga gggcgacatt gtagtgatcg      5940
     tggatccaaa ccttccccga aacacttggc ccaagggacg ggtagtggcg gtcatccagt      6000
     cgaaggacgg gcaagtccgg cgcgcaaccg tagctacaag caccggaatc tacgaacggc      6060
     cggccacgaa gatagccgtg ttggatgtac aacaggaaaa taatacttac ccgccggaga      6120
     ccaacagtcr acagcactaa gaataaccca cgaaatggta agcgaaaaca catggtcacg      6180
     acacaacaac aataacgaac tgaagagtca agagcttccg ggcaattgac tgggcgggag      6240
     aa                                                                     6242
//
ID   BEL18-LTR_AG repbase;    DNA;    INV; 366 BP.
XX
AC   .
XX
DT   02-MAY-2003 (Rel. 8.04, Created)
DT   02-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL18-LTR_AG is a long terminal repeat of the BEL18_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL superfamily; BEL18; BEL18-I_AG; BEL18-LTR_AG;
KW   RETRO937_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-366
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO937_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 22-22 (2002).
XX
RN   [2]
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL18_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (13-APR-2003)..
XX
DR   [1] (Consensus)
XX
CC   BEL18-LTR_AG is a long terminal repeat of BEL18_AG (its internal
CC   portion is BEL18-I_AG).
XX
SQ   Sequence 366 BP; 119 A; 74 C; 79 G; 94 T; 0 other;
     tgttattgtt taacacagga aaacatcgaa tgtcagcgca agtgtcaagc agtgacattt        60
     gacccacgtt actgctcgac tgtgggactg ctcgactaac gatgaggatc gcaagcccgc       120
     gaatttgcaa tggtggaaaa gccataaaag ggaaatttgg gaaagcactt tctctttttc       180
     tcgtcatcac cgcggaacca gaagcagtgg aattttttta accactttgt tataagtaaa       240
     tttacagtac caccgttacg tactgcgtta atagaattca ataaagtgaa gttaagagaa       300
     cctaactaac gtcgcgagtg aatcatttcg ggaaaaaaaa tatcaccgga cgttgctaac       360
     gcaaca                                                                  366
//
ID   BEL19-I_AG  repbase;    DNA;    INV; 7794 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   BEL19-I_AG is an internal portion of the BEL19_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL19-I_AG; BEL19-LTR_AG; BEL19_AG; Bel clade; integrase;
KW   protease; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-7794
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL19_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(5), 85-85 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL19_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL19-I_AG, an internal portion of BEL19_AG is flanked by
CC   BEL19-LTR_AG
CC   LTRs. The A. gambiae genome harbors several copies of BEL19;
CC   they are less than 5% divergent from each other.
XX
SQ   Sequence 7794 BP; 2457 A; 1768 C; 1927 G; 1642 T; 0 other;
     tttggtggct ccagagagga taataattca ttagtatttt tatttacccc gtaagaggga        60
     cccttcattg ggacaacctg gccaaacaat attagtatat gtgttgtatt gtccaaaccc       120
     ccttccccgc cccctcgatt ccccaccccc tcaaccgagt cgggccagcc aggagccccg       180
     ctgccaggga aggactcaac cgagtcgggc cagccaggag ccccgcagcc agggaaggac       240
     tcaaccgagt cgggccagcc aggagccccg cgccagggaa ggactcaacc gagtcgggcc       300
     agccagtagc cccgctgcca gggaaggact caaccgagtc gggccagcca ggagccccgc       360
     tgccagggaa ggactcaacc gagtcggacc agccaggagc cccgcgccag ggaaggactc       420
     aaccgagtcg ggccagccag gagccccgcg ccagggaagg actcaaccga gtcgggcctg       480
     ccaggagccc cgctgccagg gaaggactct accgagtcgg gccagccagg agccccgcgc       540
     cagggaagga ctcaaccgag tcgggcctgc caggagcccc gcgccaggga aggactcaac       600
     cgagtcgggc cagccaggag ccccgcgcca gggaaggact caaccgagtc gggcctgcca       660
     ggagccccgc tgccagggaa ggactcaacc gagtcgggcc agccaggagc cccgctgcca       720
     gggaaggact caaccgagtc ggaccagcca ggagccccgc gccagggaag gactcaaccg       780
     agtcgggcct gccaggagcc ccgctgccag ggaaggactc aaccgagtcg ggccagccag       840
     gagccccgcg ccagggaagg actcaaccga gtcgggccag ccaggagccc cgcgccaggg       900
     aaggactcaa ccgagtcggg ccagccagta gccccgctgc cagggaagga ctcaaccgag       960
     tcgggccagc caggagcccc gctgccaggg aaggactcaa ccgagtcggg ccagccagga      1020
     gccccgcgcc agggaaggac tcaaccgagt cgggcctgcc aggagccccg ctgccaggga      1080
     aggactcaac cgagtcgggc ctgccaggag ccccgctgcc agggaaggac tcaaccgagt      1140
     cggaccagcc aggagccccg cgccagggat agactcaacc gagtcgggcc tgccaggagc      1200
     cccgctgcca gggaaggact caaccgagtc gggccagcca ggagccccgc tgccagggaa      1260
     ggactcaacc gagtcgggcc agccaggagc cccgcgccag ggaaggactc aaccgagtcg      1320
     ggccagccag gagccccgcg ccagggaagg actcaaccga gtcgggccag ccaggagccc      1380
     cgctgccagg gaaggactca accgagtcgg accagccagg cgccccgcgc cagggaagag      1440
     ctcgtgggag ctaggccgct gccagggagg tagccgccca ccgccccgcg ccagggaaga      1500
     gctcgtggga gctaggccgc tgccaggaag gtagccgccc accgccccgc accagggaag      1560
     agctcgtggg agctaggccg ctgccaggga ggtagccgcc caccgcccct cgccagggaa      1620
     gagctcgtgg gagttaggcc gctgccaggg aggtagccgc ccaccgcccc gcgccaggga      1680
     agagctcgtg ggagctaggc cgctgccagg aaggtagccg cccaccgccc cgcaccaggg      1740
     aagagctcgt gggagctagg ccgctgccag ggaggtagcc gcccaccgcc tcgcgccagg      1800
     gaagagctct tgggagctag gccgctgcca gggaggtagc cgcccaccgc cccgcgccag      1860
     ggaagagctc gtgggagcta ggccgctgcc agggaggtag ccgcccaccg ccccgcgcca      1920
     gggaagagct cgtgggagct aggccgctgc caggaaggta gccgcccacc gccccgcacg      1980
     aggaaagagc tcgtgggagc taggtcgctg ccagggaggt agccgcccac cgccccgcac      2040
     cagggaagag ctcgtgggag ctaggccgct gccaggaagg tagccgccca ccgccccgca      2100
     ccaacagcaa agctgagcgc cgtagaaggt cggtaagcga tttactattt ttactataat      2160
     taagagtgaa gtgaagtgaa acacaaaaaa aatggcgaca tcaaaggcga gggcaatcaa      2220
     ggaagcggaa gtgaatctcg tagaggtgat agttggtcta aaacaggaat tagcggaaac      2280
     caaagaaaag tgggaaaagg aatcaaagga attaaaaaaa gtaattgaaa gtagggcaaa      2340
     agaagatgaa gcgtcaatcc tcttaaagga gcaacgccag gctttcgatt cgatgatgat      2400
     cgaacaacga caaatttttg atgaatggaa gaaacagact gaaaatccgc aagtaacgac      2460
     cactccaatt aactctacca gtaatttaga aagcatagta cattcattag cggatgcact      2520
     gaaaacacgc actaacactg ctatcctcga tcttcccgaa tttgatgggg actataaaat      2580
     gtggcctagg ttcaaagcta ttttcgataa aactaaccaa gaaggcaagt taagtactac      2640
     ggagcaatta gcccgtctat caaagagcct taagggaaat gccgctcaga gtgtaagccg      2700
     tctgatgatt gacccggcta atgtatcaaa aataatagac cggttggaag aagaatatgg      2760
     gaatgcaaaa atagtttaca aagcactttt agcagacctc atgcaaaatg aaaatccatc      2820
     ccttagtaaa ccaaagacat ttttaagctt catcaggtca ttagacgacc ttgttacaaa      2880
     catgacagta ttaaaaaagg aagaatatct tacggatcca aggctattag acgatttggt      2940
     cgataagctt ccagaagacc taaagcgtga gtggttaata accttgattc gagagaaaga      3000
     ggaaggagga aatagtcgca ttaaaacact aaacgatttt ttgaagtggc ttaaacctac      3060
     agagaagctt gccatcctat caaatgtaaa tgaaggccgg gaggaggcta tatgtgataa      3120
     aaacctaagt tcaccaatag aaccgaaccc aaatagaaat accagaacct gttgccatgt      3180
     ttgtcaggga gaccatcgca ttgtcgattg aagaagattt cggggtatgc gattaaatga      3240
     aaggtgggac gccgttagaa gatttgggtt atgtacaaac tgttgtaaca acagaaatca      3300
     taatgctaat aattgtcgat taccacccca gtgtcgtgaa gccaattgtc atatgaaaca      3360
     tcatccatta ttacattaca ctaacaagag tcaaaataat ttaaacacat tgaaccatca      3420
     cagtaccacc gaaggaatat tttaccaaat aataccggtc tctgtcattc acgaagacaa      3480
     agaaattgat acatttgcct ttatagatac aggttcttcc gcaagtcttt tgttaacaga      3540
     tattaaagaa agtttgggtg ttcaggggat aagaaagcca ttggctctga catggaccaa      3600
     tggcgaaatg caggaggaag ctaccagcga attagtcaat ttgcaaataa ggggtatgag      3660
     tggcctaata caaccattga aaggattgag gacaattagg gaaatgaatt taccttcaca      3720
     aactttaaac gcgaactcgt tgaaaacccg atacaaacat tttgatggaa ttgatcttcc      3780
     aaactacata gatggagcac caaccatttt gttaggctta ccacacgctc accttatttg      3840
     tgggtcggaa aatcgcgttg gtggtccaga tgaacctatt gcgatcaaaa cctcattagg      3900
     ctggtcagtt ctaggtaagg gatcgaaaag ggaaaacaaa ggtagcttgt ttgtgctaaa      3960
     tgaaaaatgt gataaagaag aaaaaggaat ggaggaaatt atgaaggaat tttttacaac      4020
     cgaaggtttt ggtgttcaac ctagcccaaa tataataacc ccaaaacatg aagaaagagc      4080
     attgaacttg atgaaaaata ctctaagacc actagaaacg ggctatgaaa taggactttt      4140
     atggaaagag gatgatataa acctcccaga aagctatacc caagcgctta gacggttgca      4200
     gggttttaaa gaagacttga aaaagatgta aatcttaaaa actggtacta caacgaaatt      4260
     tcgttatact gccaaaaggg atacgctaag gaagttaaca cggaaataca aatacacaac      4320
     agaaatttaa actatatacc acatttcgca gtagtgaact taaacaaatt aaacccaaag      4380
     ccaaggttgg tctttgacgc cgcggctcgg aacatgggga tctctctaaa ttctcagttg      4440
     ctgacaggac ctgatgcagt ccctccactc attggtatcc tgttaagatt tagagaaggc      4500
     agcattggag tctctggcga tattcaagaa atgtttcgcc gcattagaat tcgagcagat      4560
     gacagatgtg cacagcgctt tctttatagg gaatccccaa attattcacc aaagatcatg      4620
     gaaatgagag taatgatctt tggcgcttct tgttcccctg cgtgtgcaca atacgttaaa      4680
     aactacaacg ctggattatt tcggcagcgg taccctgagg cagttaaagc tattgaaaat      4740
     aatcattatg tggacgacta tctagatagt ttcacgtcaa tagaaacagc aacccaaaga      4800
     gtaaatgaag tgatacttat tcataatcaa gcagattttt ttattcgaaa tttcatatcc      4860
     aactctagtc aattaaccaa ccaaattcct tgtgaacgta tttcaaccca acctgttttg      4920
     aagataagcg aaggcacctc aaattttgat aaaattctag ggcagtactg ggaaaaagaa      4980
     aaggatgtat tcaagtttat tttaaatgat ctgaccattc ctggccattc agtcagcaaa      5040
     cgagaaatgc ttgcaaaaac aatgaaaata tatgatccaa tgggactcct taccaattat      5100
     actatagagc ccaaaatact aatacaagaa gtatggaagt tgaagatgga ttgggatcaa      5160
     aatattcctc ctgatctaaa tagaaaatgg caagactggt tgcacaggtt gaaggaatta      5220
     gaaacatggg aacttcagag atgttattca caagcaggag agccaattac aagagagctt      5280
     cacacatttg tcgatgcgtc tgagcaagca tttgctgctg tcacatatat tcgcacagtc      5340
     cataaggaag gagtagacat gcgattggtt gcaggaaaat caagggtagc gccacttaaa      5400
     attttaacaa tacctcgact tgagttgcag gcagcggtaa tgggggcgag actagccgat      5460
     actatccgat cggagttaag actcaacatt gataatatgc atttttggtc cgactcaaga      5520
     accgtgctaa gctggatatg ttcggaacct aggaggtaca agcagtttgt agcctttaga      5580
     gttagcgaaa tcctctgcaa aactcacgcg agtgaatggc attggattgc gtccaaagac      5640
     aatcctgcag atgaagcaac aaaaagaata aggggggatt ccatatggat atctggtcct      5700
     ttatttttac gacaaaggaa tttcacaacc accaattacg attctactac tctagtagat      5760
     atcagaccga tgtttttaat acactctact gaccttatag attttacagt cataaattca      5820
     cattggacta gaagttgggt taaattgaaa cgagcattag ccattgggtt attatacatg      5880
     gagtggttga aatcgaaggc tcagaaatat aaaatatcgt tggaaataac taaaaaacaa      5940
     ttagataggg cagagaaatt gctcataaaa aggctcaaat ggaaacgttt aatgaagaca      6000
     taatgttatt aaagattgga aaggaaatat caatgaaaag ccccataaga aatttaaatc      6060
     ctgtgctaga tacagatggt ctgttgcgaa tgaaaggaag gctaactggg ttatcatttc      6120
     tcgaagaaaa cgcaaaaaat ctcataatat taccaaagaa acatgaaatc acccatgtaa      6180
     ttgtacggca ctaccatgaa cgattatacc acaagaagtt cgaaacagca ctggccgcct      6240
     tgaggcaacg tttctgggta atagatagca gagcagtact taaaagagta agagcgacct      6300
     gtcagagttg caaaaataac ttagctaaac ctcaacttcc ccaaatggcc gttttacccg      6360
     cttgcagggc agccgtattt tgcaaacctt ttacgcatac gggcgtcgac tatttcggtc      6420
     ctctaaccgt gactataggg aggcgatctg aaaaaagatg gggtgcgctg ttcacgtgtc      6480
     tctcaacacg agcagtacat ctagaattgg ccacagacct tagttctgct tcgtttataa      6540
     catgcctgag aaaaatgcaa caccgaagag ggaaaatcac gcacatgtat agcgataatg      6600
     gaacaaattt cataggtgct gaacgcgaaa tgaaaaggtt gcgagaaagg tgtgcaaacg      6660
     atggcataga atggcatttt aaccccccag ctgcacctca cttcggtggg gcatgggaga      6720
     gaatggtagg cgaagtaaaa agtttactcc ctctcaagca agagtcttat cgtgaagaag      6780
     cgttgcgcgc gattctggtg gaaattgaat tcattattaa cagcagacca ttaacacata      6840
     taccattaga gcatgaagat gatgaaccgt tgacacctaa tcatttccta ttgggttcat      6900
     cgggagaagc tgtccctaca cttcgagaag ctacatttgc tgaagctacc agaagcagct      6960
     ggaaaagggt tcaattagta gcgcaacatt actggacacg gtggattaga gaatatttgc      7020
     cacaattaaa caaacgcgag aaatggttga aaaaggtgtc tccaattgaa gttggcgata      7080
     tagtggtttt cccaaatgaa cagattaacg gtaaatggca aaagggtcga gtatcaaagg      7140
     tctataaagc aaatgatgga caagttaggt cggtcaccat cacatccggg ttatcaacag      7200
     tcaatcgtcc ggtttcaaag gtcgcaaaat tagatgtact tccaaaatcc attatagctg      7260
     aggcgcagca aaaagtgcaa tagtccattc caaaaaaaaa aacaaacaaa aaaaaaacaa      7320
     gtaataatta taattataat actaagatta aaaaaaaaaa acaattagta gcaacaatag      7380
     taatcagaac atagctttgt tcttgcagcc acattcgcgt taaatattag gtgcatcttc      7440
     gtgtggaagt acatgcaata ataataatag gatataagtg aattaattat tggcgagttt      7500
     atttatgttt ttaatcttgt gatgttcaat ttaacttatt attttatcat gcttatttat      7560
     tcaactttta atgtgtatcg ttaagtaatt attctataat ttaagtattt ggtcaattta      7620
     atcatagagc gtcaatttaa tgtctcaatc ttccagtaaa tcagagtaaa tgaactgagc      7680
     ctgagtgttc agcagtcgtt agtctgagaa tattcgatag ccatttatca ataacggcaa      7740
     ccgccgtcgg ctagtttatt gtaacacctc ctagaggaat tacgggaggg ggaa            7794
//
ID   BEL19-LTR_AG repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   BEL19-LTR_AG is a long terminal repeat of the BEL19_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL19-I_AG; BEL19-LTR_AG; BEL19_AG; BEL superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-302
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL19_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(5), 86-86 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL19-LTR_AG is a long terminal repeat of BEL19_AG (its internal
CC   portion is BEL19-I_AG).
XX
SQ   Sequence 302 BP; 111 A; 65 C; 72 G; 54 T; 0 other;
     tgtcgccgac agcggtaatt aggctgcgcc aaaagggtat gcaatctgca tcacaaccaa        60
     caacaacaac aaatgtcaat agcgtagagc gtaggacgta ggaccaaggg ccaaaggctt       120
     accaaccaac aacaacaaca aatgtcaata gcgtagggcg tagggccaaa gggccaaggg       180
     cttagcgatc gctagagcag catgtgccag caggatgcat acctttcttg gaaaatttgt       240
     aaaaacaagg ttttaaatcc ccaggggtaa aaataaatga attatactaa ctggagaaaa       300
     ca                                                                      302
//
ID   BEL1_I_Dpse repbase;    DNA;    INV; 5828 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   08-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_Dpse;
KW   BEL1_LTR_Dpse; BEL1_I_Dpse.
XX
NM   BEL1_I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5828
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1008-1008 (2009).
XX
RN   [2]
RP   1-5828
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
CC   [2] Sequence updated. 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           224..5704
FT                 /product="BEL1_I_Dpse_1p"
FT                 /translation="MDGVKGQQSESGGETPCGLGEINVPEKMLGACSETEG
FT                 GARETHRVRDTYIDVISAATTATPNVSTTAPTSHQAPEHTNQGGGVDQAFS
FT                 PRTSLLDSWETFAQQRADALGRPTYATAFEGMRSIPTHSRLPQAGGLMSST
FT                 VINGGWDRAVPNWTGVHMSGPTEATRTGMPTGLNPNETMPVGAMWHPMAAP
FT                 ALGTNLHGQNPFIRAPTAQYYPSTSRNISDPYAYGSNQAVAPAGAERCLTA
FT                 SQIAARQVINKDLPCFSGNPEEWPMFIVNFEQSTERCGLSDQENLMRLQRC
FT                 LKGAALEAVRGKLMMPATVRLAIETLRMLYGRPEAIYHTLQTKLRMEPSVK
FT                 SSSIESLVRLALSVQNYRATVDAIGLSAYLNDPMLLRDLVEKLPFDLKLDW
FT                 ARQSAGLPRVNIAVFDDWLFRVASCASTVMPVAPEKEVCTKEKNPRVRLMV
FT                 HNDSSAQPPCRRCNGAHKLEDCKQFLELEGPGRWNFVRENKLCWRCLGKHF
FT                 IRHCKSTRVCSVDGCSRKHHFLLHNSNQQSSRVENRPKESTTVLHTMQNEA
FT                 ALFRYVPLTLYGPNGQMQVFALIDEGSACTLIETEITEKLGIDGPSDELCL
FT                 RWTGDITQRESQSKWISLAISPRDNVARRFTLQNVRTVKNLDLPKQTLDDS
FT                 ILRSHSHLEKLPILSYKDVRASLIIGLDNVKLGVPLTVKERENSEFIAAKS
FT                 RLGWSVYGRRKGDGPASPRVMHVCECNKHPQLDTLVKESFSLDAVGINMAK
FT                 STLRSKEDERAKTILENSTRFSSEMKRWETGLLWRYDNVELPSSREMAMRR
FT                 LRCLESRMTRDKVLREFVNEQIKRYEDIGYVRKLEKDEMVEGKRSWYLPVF
FT                 VTKNPNKGKLRLVWDAAAKVEGIALNSMLLKGPDQLPSLVGVISRFREKSI
FT                 GICGDIREMFHQVRIRXEDQSSQQFLWRYGDTSREPDRYVMSVMTFGASCS
FT                 PAAATYVRDRNAERFIEEQREEVEAILRNTFVDDWLQSCDSEDEMVRLALA
FT                 VRNIHKEGGFEMRGWISNSSTVMRALSGDGDHQERPIEMTDSTRRERVLGM
FT                 WWHPRNDYFTFVNKFPNDIYDEAKTVTKRSILRTVMTIFDPLGLLGFYIIQ
FT                 AKIILQDVWRSAVGWDEQVEESERQRWMIWARQLQNIEELRVPRYLGLTKE
FT                 TSNIQLHIFTDASINAFAAVAYIRIEQRGEVRCTLLASKTRVAPLKPISIP
FT                 RMELMAAILGLRLAKLITQELSVEVKRRVFWTDSKNVLYWICSDARKYHQF
FT                 VALRIGEILETSDISEWKWVPSALNVADDGTKWTKESSFQPEARWFSGPPF
FT                 LFDEEEHWPTTQLNSSNLERIHVHEWTDTPKPPSKLSSIIPNVCRFSKWEK
FT                 FTGALRCVMRFLDKIRKRDFASEEANLAARFRNMEDVNIVIYRMVQEEAYS
FT                 EEMALLRQGRIVSKKSSIYKLSPYLDETGVLRIRGRIDKSIGITRNLKRPV
FT                 ILPGGHNVTNLLIDYFHRKFQHQLTEIVVNEMRQLYHIPGLRARVRAVAKT
FT                 CQRCRNKRALPEAPEMGSLPPERLAINELPFTNTGIDYFGPLEVNVGRRRE
FT                 KRWGVLFTCLTVRAVHIELANSLSTDAFMLTLEMFVARRGVPKRIVSDNGT
FT                 NFRGASRLLREEIERILPNELETKYPQIEWSFIPPGAPHMGGAWERMIRSV
FT                 KSILAEILEETHVQEPVLRTALAKIENMLNSRPLTYVPLECPEADVLTPNH
FT                 FLRAETSSMAAKSDGSAIGAMLGKSFRIAGQIVDSFRKRWLKEYLPCLTTR
FT                 TKWHGPPTNPIQLGDVVVLADETSPKVQWRKGVIMDLRVAKDGIARSAVIR
FT                 MHLDC"
XX
SQ   Sequence 5828 BP; 1761 A; 1406 C; 1543 G; 1116 T; 2 other;
     ttctaaaaaa cttttcctgc gcaacagaga gcaaatcgaa taattacgac cgacagaaag        60
     aagatcggcg tgcgacgcag tcagctgcgt cacgagggat tcgactttgc aggtgagata       120
     tcctcataca gttggacaga aaggctaatc tcttacattc gagcgacacg tggttcgtgt       180
     ataaccacaa accaggactg tacaaaaaag acaccggagt aaaatggacg gcgtcaaagg       240
     tcagcagtcg gaatctggcg gtgagacccc gtgtggatta ggagaaataa atgtgccgga       300
     aaagatgctt ggtgcgtgtt ctgagactga gggaggtgca agggaaactc atcgcgttag       360
     ggatacatat atagatgtga tctcggcggc aacaacggcc acacctaacg tgtccaccac       420
     agccccaacg agccatcaag caccagagca taccaaccaa ggaggagggg tggatcaagc       480
     cttttcacca agaacgagcc ttttagatag ctgggaaacg ttcgctcagc agagagcgga       540
     cgcattagga aggccgacgt acgccacggc cttcgaggga atgcgctcca tcccgacgca       600
     ttccagactg cctcaagcag gaggcctcat gagctccacg gtaatcaacg gaggctggga       660
     cagagcagtt cccaactgga ccggagtcca catgtcagga cccacggaag caacgcggac       720
     tggaatgcct actgggctga atccgaacga gacaatgcca gtcggcgcta tgtggcatcc       780
     aatggccgca ccggcgctgg gtaccaacct gcatgggcaa aaccccttca ttcgcgcccc       840
     gactgcacag tattacccaa gtacgagtcg aaatatttcg gacccgtacg cgtacgggag       900
     taatcaagcg gtcgcgccag cgggggcgga gagatgcttg acagcatccc agatagccgc       960
     aagacaagtc atcaacaagg atctaccatg cttttctgga aaccccgagg aatggcccat      1020
     gttcatagta aacttcgagc aatctacaga acgctgcgga ctcagcgatc aagagaatct      1080
     catgaggctg caaaggtgcc tgaaaggtgc tgctttggaa gcagtacgag gaaaattaat      1140
     gatgcccgca acagttcgac tagccatcga gactcttcga atgctatacg gccgaccaga      1200
     ggccatatat cacaccctac agacgaagct aagaatggag ccgtccgtga aatcgagcag      1260
     catcgaaagc ctagtgcgcc tggcgctgtc ggtgcaaaat tatcgcgcta ctgttgacgc      1320
     gataggactg tccgcctatc tgaacgaccc aatgttactt cgcgaccttg tggagaaact      1380
     cccattcgac ttgaaactgg attgggccag acaaagcgct ggacttccga gggtaaatat      1440
     cgctgttttc gacgattggc tattccgagt cgcatcgtgc gcaagcaccg tgatgccagt      1500
     agcacccgag aaagaagtct gcacgaagga gaagaaccca agagtccggc ttatggtgca      1560
     caatgatagc agcgcacaac cgccctgccg taggtgcaat ggggcccaca aattggagga      1620
     ctgtaagcag ttcctggagc tagaagggcc aggtagatgg aacttcgtca gagaaaataa      1680
     gctatgctgg aggtgccttg gcaaacactt tataaggcac tgtaagtcaa caagagtatg      1740
     ttccgtcgac ggatgctcga gaaagcacca tttcctcctc cacaacagta accagcaaag      1800
     ctctagggta gagaataggc cgaaggaaag cactacggta ctgcacacga tgcagaacga      1860
     agctgcgttg tttagatacg tccccttaac attgtatgga ccgaacggcc aaatgcaagt      1920
     gttcgcactg atagacgaag gatccgcctg taccctaatc gagacggaga taacggaaaa      1980
     actaggtatc gatggcccct cggacgagct atgcctacgc tggactggag acatcacgca      2040
     gagagaatct caatccaaat ggataagcct agcgatctct ccaagggaca atgtggctcg      2100
     cagattcacg cttcaaaacg tgagaacagt aaaaaacctg gatctgccga agcagacgct      2160
     ggacgactca atcctaagat cccattcgca cctggaaaag ctaccgatac tcagctacaa      2220
     ggacgtgaga gcgtcattga tcatcggatt ggacaacgtg aaacttggag tgccactgac      2280
     cgtcaaagaa cgcgagaatt ccgaatttat cgccgccaag tccaggttgg ggtggtctgt      2340
     ttatggccgc agaaagggcg acgggccagc gagtccgcgg gtaatgcacg tatgcgaatg      2400
     taataaacac ccacagctgg acactcttgt aaaagagagt ttctcattag acgcggttgg      2460
     cataaacatg gcgaagagca cactcaggtc caaagaggac gaaagagcaa aaacaatact      2520
     ggaaaattcc acgaggttta gcagcgaaat gaagagatgg gagacaggac tcctctggcg      2580
     gtacgacaac gtggaacttc cttcctccag agagatggca atgcgacgac ttcggtgcct      2640
     agaatctcgt atgacacgcg ataaggtgct acgagagttc gtaaacgaac agattaagag      2700
     gtacgaagac atcggctacg tccgaaaact ggaaaaagat gaaatggtcg aaggcaaacg      2760
     ctcctggtat ctgcccgtat tcgtgactaa gaacccgaac aaaggcaaat taagactcgt      2820
     atgggatgca gcagccaaag tggaaggcat cgctcttaat tcaatgctac taaagggccc      2880
     cgaccaactg ccatcgctgg taggagtaat atcgcgcttt cgagagaagt ctattggcat      2940
     ctgcggagat attagagaaa tgtttcacca ggttaggata cgtkcggagg atcaaagctc      3000
     acagcagttt ctctggagat atggtgacac cagtcgagaa ccggataggt acgtaatgag      3060
     cgtaatgacc tttggtgctt cttgttcccc agcagcagcg acctacgtga gagataggaa      3120
     cgcagaaagg ttcatcgagg aacaaagaga ggaagtagag gccatacttc gcaacacctt      3180
     tgtagatgac tggctccaaa gctgtgactc agaagacgaa atggtccgtc tagcgctggc      3240
     agtgaggaac atacacaaag aaggaggctt cgagatgaga ggatggatat ctaactcgag      3300
     caccgtgatg agagcgctct caggagatgg agatcatcaa gaacgaccca tcgagatgac      3360
     ggactcgaca agacgagaac gagtgcttgg catgtggtgg catccaagga atgattactt      3420
     caccttcgtc aataagtttc cgaatgacat atacgacgaa gcgaaaactg tgacgaagcg      3480
     gtcaattcta cgtacagtca tgaccatctt cgatccctta ggactactgg ggttctatat      3540
     tatacaggca aagataatac tgcaggacgt gtggaggtcg gccgtaggct gggatgaaca      3600
     ggtcgaagaa agcgaacgtc aacgttggat gatatgggca cggcaactac aaaacatcga      3660
     agaattaagg gttccacgat atctcggtct aacgaaagaa acatctaata tccaattaca      3720
     catctttaca gacgcgagca taaacgcctt tgcagccgtc gcctacataa ggatcgaaca      3780
     aagaggagaa gtcagatgca cactactcgc atcmaagaca agagtggcac cattgaaacc      3840
     aatttcgatt cccaggatgg agcttatggc agcgatcctc ggcctacgac tagctaaact      3900
     cataacacag gagctctccg tcgaggtcaa gcgacgtgtt ttttggaccg actccaagaa      3960
     cgtgttgtat tggatatgtt cagacgcccg aaagtaccat cagttcgttg cgctccgaat      4020
     tggagagatc ttggaaacct cggacatatc agaatggaaa tgggttccat ccgctctgaa      4080
     cgtagcagac gatggaacga agtggaccaa agagtcgagt ttccaaccgg aagcgagatg      4140
     gttctccggt ccgccgttcc tatttgacga ggaagaacac tggccaacta cacagctcaa      4200
     ctcgagtaat ctggaacgga tacacgtaca cgaatggaca gatacgccga aaccgccatc      4260
     aaagctgagt agcataatcc caaatgtatg tcgctttagc aaatgggaaa agttcacggg      4320
     agccctgaga tgcgtgatga gatttctgga caaaatacgc aaaagagatt tcgcatcaga      4380
     ggaggcaaat ttagccgcac gctttcgcaa catggaagat gtcaacatcg ttatataccg      4440
     gatggtccaa gaagaggctt actctgaaga aatggctctt ctacgacaag gaagaatcgt      4500
     gagtaagaaa agttcgatct acaaattatc gccgtacctc gatgaaacag gcgtactgag      4560
     aatacgcggc cgcatagata agtcgatcgg cataacgagg aacctgaaac ggccagtaat      4620
     tctacccgga ggacataacg tcactaatct tctcattgat tatttccatc ggaagtttca      4680
     gcatcagctt actgagatcg tcgtcaacga gatgcgacaa ttgtaccaca taccaggact      4740
     gcgagcaaga gttcgcgccg tagcgaaaac ctgccaaaga tgtcgcaata aaagagcgct      4800
     tccagaggcg ccggagatgg gaagcctacc accagagagg ctagcaatca acgaattgcc      4860
     attcacaaac acaggtatcg actacttcgg accactggag gtaaacgtag gaagacgacg      4920
     cgagaaacga tggggagtac tattcacgtg cctcaccgtg cgagcagtac acatcgagct      4980
     ggcaaactcc ctgtcaacag acgccttcat gctaacattg gaaatgttcg tagcccgtcg      5040
     aggagtcccc aagagaattg tgtcggacaa cgggacgaac ttccgaggag ccagccgcct      5100
     actacgagaa gaaattgaaa gaattctacc gaacgaactg gaaaccaagt acccgcaaat      5160
     agaatggtcc ttcatacccc caggagcacc ccacatggga ggtgcgtggg aaagaatgat      5220
     cagatcggtg aaatccatac tagccgaaat attagaggag acgcacgtac aagaaccagt      5280
     gctgagaaca gcactagcaa agatagaaaa tatgctaaat tcccgacccc tgacttacgt      5340
     gccgttggag tgtccggaag ccgacgtact tacaccgaat cactttctga gagcagagac      5400
     cagctcgatg gcagcaaaga gcgacggcag cgcaatagga gctatgcttg gtaagagttt      5460
     tcgcattgca gggcagatcg tggacagctt cagaaaacga tggctgaagg agtacctacc      5520
     gtgcctgacg acacgaacca aatggcatgg acccccaacc aaccctatcc aactcggaga      5580
     cgtcgtggtt ctagcggacg aaacaagccc caaggtgcag tggaggaaag gcgtcatcat      5640
     ggaccttcga gtagccaagg acgggatcgc ccgaagcgcg gtgatccgca tgcatctgga      5700
     ctgctaactc ggccaatagt taaactggcc aagttagacg tgaggacaac gaacccacta      5760
     atggatcaag gcgtaaccag aagtttggca aacatcacga caagcgacga agtttgcgaa      5820
     ggggggaa                                                               5828
//
ID   BEL1_LTR_Dpse repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   08-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL1_Dpse;
KW   BEL1_LTR_Dpse; BEL1_I_Dpse.
XX
NM   BEL1_LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1009-1009 (2009).
XX
RN   [2]
RP   1-390
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated, 5-bp TSD.
XX
SQ   Sequence 390 BP; 140 A; 90 C; 93 G; 67 T; 0 other;
     tgttacggca gaaaccgcag cggcagctct aaatatcact gcgcctaaca gtcctgaata        60
     tcactgcgcc taacagccct gaacatcact gcgttaacag cacaaacatt aacagcgctg       120
     agcaaagggt taattagggc gaacggcaga taaaggcagg aaaaaggaag aacgaaaaca       180
     aaggcagcgg aaaaagcact gaagcggtac aagtttttta gcgctagctc tcgtagttta       240
     acacccgccc gacattgtaa atgaataaat gaatgaaaca aaccaaaata aaaccgattt       300
     aaagaacaaa accacgggag gcctattgaa cacgggaggc ttatcaaacg tacggccgca       360
     gatttggagg cgttgcccgg cgcggcaata                                        390
//
ID   BEL2-I_AG   repbase;    DNA;    INV; 5541 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL2-I_AG is an internal portion of the BEL2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL2-I_AG; BEL2-LTR_AG; BEL2_AG; Bel clade; PHD zinc finger;
KW   integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5541
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL2_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 10-10 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL2_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL2-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL2-LTR_AG
CC   LTRs. The BEL2-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 5 copies that are ~3% divergent from it.
CC   The consensus sequence encodes one protein: a 1750-aa BEL2-I_AGp
CC   (positions 239-5488). It is composed of the PDH domain, reverse
CC   transcriptase and integrase domains.
CC   BEL2-I_AGp:
CC   MASRRLYFVENEQGACRLCTKPDDIDDMVRCDECDRWFHASCVKVIRLPDEDEEFVCVKCxNDRAEYMxI
CC   SQSTNQDTTLKALIEALKMSGLTSSTHIKRMTLNSLPNFNGTSKDWPKFKRAFEETTEEGSFSNVENLNR
CC   LQHALKGEAERCVRRLFLEPDNVPIIMKKLEEQFGRPEQVYQDLLGEVLKVRVENQMKIPDLSDALEDMI
CC   INLKAIKKEGYLQDHxLVDELIFKFSTDKQLKWIEFKSSLEKxNKIPTLEHFSEWLYPIAENIRKLPKRN
CC   ERFRQPLNFHRPQFSPNQQRPAEINNNRPMNRPPQPHNSHPMNTQTRPFNTRVRNVQRFFQPCPCCQGSH
CC   ALYRCERFKNIPVHERLEIVVNSQQCQACLTSNNHSQNNCNAARECGIQGCRETHHQLLHTGDTVRMNYH
CC   QTIQNVYYQIVPVVLRNNNHTLETYAFLDAGSSLTLIEENTANKLHLNGVTDPLTLTWTQNLSVQENCSR
CC   RVSCMIKGVNEKKEHLLNGIRTVKNLQLPSQTLSGSILAARYPHLKGIKLSDYQKARPTVLIGLNHSHLL
CC   MPLGRKMGRPEEPMAIKTKLGWLIFGIDKICLSETNHLMIHKSEDLMTEMMRRYFSTEEFGVKPVKTVKS
CC   QALERAETIIEKTLKKTDGRYEVGLLWRDDDVILPNSYSNALRRLATQEKQLAKDPGLKNWLCKTFEEYQ
CC   QKGYIRKLTKEELKRHSQKIFYIPHFVVVNKNKPIPKPRLVFDAAAKVNGVSLNSLLLTGPDEMASLFGV
CC   LLRFREGPICVCGDIKEMFHQVKIRKEDQDAQRILWRDGDSTRTPDTYVMQVMTFGATCSPACAQVVKNR
CC   NAEANSEMYPLALEPIRNQHYVDDYLDSFFSMEKAIKTVTEVIQVHENGGFHIRNFISNKRELMEAIPQE
CC   RHQVKAIVDIKEKDSCVEKILGVQWNTQLDCFGYKVDVGRINLEKKPTKREALSFVMSAYDPLGLISHIT
CC   IQGRILMQSINAATNDWDTQIPDSLHGKWIEWLKMITSVKDLAIPRPIVASIMNPVEIHTFVDASQEAFA
CC   AAVYARSNFNGCFVVRLVAAKSRVAPTKALSIPKLELQAAVLGARLTASVIKELRLKISRTIFWSDSKTV
CC   LAWINSEHRKYEVFVSHRVSEILDTTSANQWRWVSTKDNPADIATKITSNSWTWYNGPQFLQEHERDWPG
CC   VHEVAVEQHLVTVHKETIAPEYYFSSWDKLLKHQTVMKKYVDFLKNRSNFSRTISYRDMETAKLSLLRKA
CC   QWEGFPEEMEALEKRKEISNKSSIRTLVPFLDEKGILRSRGRLENASCLPYSARLPIILPQRSRVVKLLV
CC   RDYHEKYMHQADNVVIGVLRQNYWIINLRTVLKNVKSCCQRCILNTAAPKAPLMAPLPTYRTHPYNPPFL
CC   HTGVDYFGPLDVTVKRSTEKRWGAIFTCMSTRAVHLELAEKLDTDSFMVCLNNFLHRRGKITHLYSDNGT
CC   NFVGAEKELKKIVEDIDLRMGREAALKYKIEWKFNPPAAPHFGGSWERLIQNIKKALRHMVTEWKTRHPT
CC   PETLRATLIQIESILNSRPLTHLPLTSEEEEVLTPFHFLIGRGVDSLPAPTETSQVDRQQFRLAQHNAKT
CC   FWDRWKKEYLPTLIKRNKWTCKVEPIKVNDIVIITNDNAPPGQWLKGRxVETATAPDGQVRSVSVKTVQG
CC   VIKRPAVKVAVIDVKQKEHLLFVKKPPHSPTKRKVLSEENLQKVPPKKRMIAPCNWAPKLVQQLKKEDDV.
XX
SQ   Sequence 5541 BP; 1875 A; 1082 C; 1224 G; 1351 T; 9 other;
     tttggtggct ccagagagga agaagatttc gcggaaaatt acgattccga aactatcggt        60
     tcttgaaaga cggaagaaga tttaacagaa aatttctttt tcgaagctat cggttcctgt       120
     gagaattttc tctacgaagc attcgatcta gaagtctgtt gtgtcggaga cataattttt       180
     ctgcttgtcg aaagggatct gtgtattctt tgctgcacag atatactaac tttcaacaat       240
     ggcgagcaga agattatatt ttgttgaaaa tgagcaaggt gcttgtcgct tgtgcaccaa       300
     gccagatgac attgatgata tggtacgctg cgatgaatgc gaccgttggt ttcacgcttc       360
     atgcgtaaag gtgatacgat tgcccgatga agatgaagaa tttgtttgcg tgaaatgcar       420
     aaacgatagg gcggagtata tggraatttc gcaatcaaca aatcaggata caaccctaaa       480
     ggcactaatt gaagcgttga aaatgagtgg tttgacctca tcaactcata tcaagcgcat       540
     gaccctcaat agtttgccaa attttaatgg tacttcaaaa gattggccga agttcaaacg       600
     wgcctttgaa gaaaccaccg aggaaggaag tttcagcaat gtagaaaact taaatcgttt       660
     acaacatgct ttgaaaggag aagcagaaag atgtgttcgt cgattgtttc tcgaaccaga       720
     caacgttcca atcattatga agaaattaga agaacagttc gggagaccag aacaagtgta       780
     tcaagattta cttggagaag tattgaaggt tagagtcgag aaccagatga agataccgga       840
     tctgtcagat gctttggaag acatgatcat caacctcaaa gccattaaaa aagagggata       900
     ccttcaagac catmgwttag tggatgaatt aatttttaaa ttttcgaccg ataaacaatt       960
     gaaatggatc gaatttaagt ctagccttga gaaaragaac aaaataccaa cacttgaaca      1020
     ttttagtgaa tggctttatc cgatagcaga aaatatcaga aaattgccga aaaggaatga      1080
     aagatttcga caacctttaa actttcatcg tcctcaattt tcgccaaatc aacaacgtcc      1140
     agcggaaata aacaacaatc gtccgatgaa tcgtccacca caacctcata attctcaccc      1200
     gatgaacaca caaacaagac cattcaatac acgtgtgcgg aacgttcaac gatttttcca      1260
     gccatgtcca tgttgtcagg gttctcacgc actatatcga tgtgaacgtt ttaagaatat      1320
     tccggtacat gaaaggctag aaatagtggt aaacagccag cagtgtcaag catgtttgac      1380
     atcgaataat catagccaga acaattgcaa tgcggctaga gaatgcggta ttcaaggatg      1440
     cagagaaacc catcatcagt tactgcacac tggagacaca gttcggatga attaccatca      1500
     aacaattcaa aatgtctact accagattgt tccagtggtg ttgcgaaaca ataatcacac      1560
     gttagaaacg tacgcatttt tagatgccgg gtcatcttta acactcatcg aagagaatac      1620
     ggcaaataaa ttgcacttaa acggtgtaac cgatccatta accctaacat ggacacaaaa      1680
     cctatcggtg caggaaaact gtagcagaag agtgagctgc atgatcaaag gagtgaacga      1740
     gaaaaaagaa catttactta atggtatacg gactgtgaaa aatctacaac tgccaagtca      1800
     aacgytatct ggcagcatat tagcagcacg ttatccgcat cttaaaggca tcaagctatc      1860
     cgactaccag aaagctcgtc caactgtgct gattggatta aaccacagtc atcttttaat      1920
     gccgcttggt cgaaagatgg gacgaccgga agaaccaatg gcgattaaaa ccaaacttgg      1980
     atggttgatt tttggcatcg acaaaatatg tctatcagaa acaaatcact taatgattca      2040
     caagagcgag gatttgatga ctgaaatgat gcgacgatat ttttccaccg aagagtttgg      2100
     cgttaaaccg gtgaaaacag taaaatctca agcattagag agagcggaga ccatcatcga      2160
     gaaaacactg aagaaaacgg atggtagata cgaagtaggc ttgctatgga gagatgatga      2220
     cgtcatattg ccgaacagct atagcaacgc gctccgtcgc ctagcaacgc aagagaaaca      2280
     gctagcaaag gaccctggtt tgaaaaattg gctgtgcaaa acatttgaag agtaccagca      2340
     gaaaggatac atacgcaagc ttacgaaaga agaacttaaa cggcattcac aaaaaatatt      2400
     ttacattcct cactttgtgg tagtgaacaa aaataagccg ataccaaagc cgaggttagt      2460
     atttgacgca gcagcaaaag tcaacggcgt ttcactaaat tcactattat taactggtcc      2520
     agacgagatg gcatctttat ttggagtgct ycttcgattc cgtgaaggac ccatctgtgt      2580
     gtgtggtgac atcaaggaga tgtttcacca agtgaaaatt cggaaggaag atcaagatgc      2640
     gcagcgaatt ttatggcgtg acggcgatag taccagaaca ccagatactt acgtcatgca      2700
     ggttatgacg ttcggagcaa cttgctcacc ggcatgtgcg caggtagtga aaaatcgcaa      2760
     tgcggaagcg aatagtgaaa tgtacccgtt agcacttgaa ccaattcgaa accagcatta      2820
     cgtggatgat tacctcgata gtttcttttc catggaaaag gcgatcaaaa cggtgactga      2880
     ggtgattcag gttcacgaaa atggtggatt ccatataaga aacttcatct cgaataagcg      2940
     agagttgatg gaagctattc ctcaagaacg acatcaggtg aaggctatcg tcgatataaa      3000
     ggaaaaagat tcgtgtgtcg agaagatcct gggtgtccag tggaacacac aattagattg      3060
     cttcgggtac aaggtagatg ttggacggat aaatctggaa aagaagccaa ccaaaagaga      3120
     agctttgagc ttcgtaatga gtgcatatga tccacttggc ctcattagtc acataaccat      3180
     ccagggacgt attctaatgc aatctatcaa cgccgcaaca aatgattggg atacgcagat      3240
     tcctgatagt ttgcatggaa aatggatcga atggctcaaa atgatcacca gcgttaaaga      3300
     tttagccatc ccaagaccaa ttgttgcttc aattatgaat ccagttgaaa tccacacatt      3360
     tgtagacgct tcacaggaag catttgctgc agccgtatat gcaagaagca atttcaatgg      3420
     ttgctttgtc gtacgactag ttgcagcaaa gtctagagtg gctccaacga aggctttgtc      3480
     aataccaaaa ctcgagctac aagcagcagt tttaggagcc agattgactg ctagtgtaat      3540
     taaagagctt cgattaaaga ttagtcgtac aatattctgg agtgattcga aaactgttct      3600
     tgcgtggatt aacagcgaac atagaaagta tgaagttttc gtatcgcatc gtgtaagtga      3660
     aatattggac acaaccagtg ccaaccaatg gagatgggta tccacaaagg ataatccagc      3720
     cgatattgcc acgaaaatca ccagcaattc gtggacatgg tacaatggtc cacagttttt      3780
     acaagagcat gaacgcgact ggcctggagt acatgaagta gctgtggaac agcacctcgt      3840
     taccgtgcac aaagaaacaa ttgctccaga atactatttt tcatcgtggg acaaattgct      3900
     gaagcaccaa acagttatga aaaaatacgt cgatttcttg aagaaccgga gcaatttttc      3960
     tcgaaccata tcgtacaggg acatggaaac ggctaaactc tcattactgc gaaaagctca      4020
     gtgggaaggt tttcctgaag agatggaagc tctcgaaaaa agaaaggaga tttcgaacaa      4080
     aagcagcatt cgaacactag taccgtttct agatgaaaaa ggaatattaa gatcaagagg      4140
     ccgtctagaa aatgcatcat gcttgccata cagcgcgcgt ttgccaatta tcttacccca      4200
     aaggtcacgt gttgtgaaac ttctcgttcg agactaccac gagaaatata tgcaccaggc      4260
     agataatgtt gtaataggag ttttaagaca aaattactgg attatcaatc tacgaacagt      4320
     cttaaaaaat gtgaaaagtt gctgccaaag atgtattttg aacaccgctg ctcctaaagc      4380
     acctctcatg gcaccgcttc caacatatag aacgcatcca tacaatcctc catttctaca      4440
     tacaggagta gattactttg gtcctctaga tgtgaccgtt aagcgctcta ctgagaaacg      4500
     gtggggagcg atatttacct gtatgagcac aagagctgta cacctggaat tagcagagaa      4560
     actggacacc gatagtttca tggtgtgttt gaataacttc cttcatcgcc gcggaaagat      4620
     aacacatctg tacagtgaca acggtacaaa ttttgttggc gcagaaaaag aattaaagaa      4680
     aattgtcgaa gatatcgatc taagaatggg acgtgaggct gcactaaaat ataaaataga      4740
     atggaagttc aacccgcctg cagcaccgca cttcggaggt tcctgggaac gtctgattca      4800
     aaacataaag aaagcattgc gacatatggt tactgaatgg aagacgcggc acccaacacc      4860
     agaaacatta agagcgactt taattcagat cgaatccatt ttaaattcgc gacctttaac      4920
     acatttgccg ctaacgtcag aagaagaaga ggttcttaca ccattccatt tcttaattgg      4980
     tagaggtgta gattccttac cagcacctac tgaaacatcg caagtggatc ggcaacaatt      5040
     tagattggca cagcacaatg ccaaaacatt ctgggatcga tggaaaaagg aatacctgcc      5100
     tactttgatc aaacgaaata agtggacgtg caaggtagaa cccatcaagg ttaatgatat      5160
     agtgatcatc acgaatgata acgctccacc tggacaatgg cttaaaggaa gartagtaga      5220
     gactgcaaca gcaccagatg gacaagttag atcagtgtcg gtcaaaacag tccaaggtgt      5280
     aataaaacga ccagcagtga aggttgcagt catagacgtg aagcagaagg agcatttgct      5340
     gtttgtgaag aagcctccgc attcaccaac aaaaagaaaa gtgctatctg aagaaaattt      5400
     gcagaaagtc ccgccaaaga aacgtatgat agctccatgc aattgggctc cgaaacttgt      5460
     acaacagttg aaaaaagaag atgatgtatg aatcgcggcc aatatagcat aatccattgg      5520
     gatgaattat ggtggggaga a                                                5541
//
ID   BEL2-I_AP   repbase;    DNA;    INV; 2265 BP.
XX
AC   Contig56303;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2AP; BEL2-I_AP;
KW   BEL2-LTR_AP.
XX
NM   BEL2-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2265
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 431-431 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   Genome; Contig56303; Positions    2811     547.
XX
CC   Positions [1153-1719] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           562..2064
FT                 /product="BEL2-I_AP_1p"
FT                 /translation="MVPEKEVEWFTRFSSLRRMQRVTAIMYRFIRHTRTKR
FT                 VPYVAPKYIHDPISDEEISNAMLPIIRMTQSLHFVSLLRILQVPTTKIVPR
FT                 SIAQLAPFVDKTNIIRVGGRLRNSCVAAETKNPILLPKSSTLTTLIIRHFH
FT                 LNHFHAGPQLTSSLISSCYWIISSRSAIRYVVFRCVVCARHRASSIHPMMA
FT                 DLPSSRVTLCRPFLHVGIDFAGPLIIAEGRRKNARSIKCYLSIFVCMTIKA
FT                 VHIEVVSDLSTSTFLAALQRFVARRGTPSDIYTDCGTNFKGAEQQLRHMML
FT                 DATAKTTYTNAILCKWHFNPPAAPHFGGLWEAAVKSTKYHLKRVIGTQRLT
FT                 FEEMVTLTSRIEALLNSRPITPLSADPNDYRALTPGHFLIGHPMVEVPEKD
FT                 VIDIPQNRLNRWELLRQMYQSLWKRWSTEYLSSLQRRTKWVDNQPNVKIND
FT                 LVLINMPNQPPIHWKLGRIQQVHPRADGVVRVATVRTEHGTLTRPIVKLAI
FT                 LPPDN"
XX
SQ   Sequence 2265 BP; 676 A; 517 C; 414 G; 658 T; 0 other;
     ctgagaaata tcactactat tttataccgt ttattttgcg ttattattat tatagtaatc        60
     tctcttaata cctcacagtg accccataag gctcatcatc accggtaaaa ttatattcat       120
     cgcgtggcca acaaaaacca cgttgaccat accacgcttg gagctgtgcg gtgcattatt       180
     attagcacaa gtgctacatc gactaacaaa tacattccac ggtaatatat tcatctcagc       240
     aacactagcc tggacatact caaccatagt gttatcatgg ctcacctcag tcgagtttta       300
     aaatattcgt aaccaacaga cttgcaaaaa tcgccgaaat cctaccaact tgtcaatggc       360
     gacatgttgt ttcggattca aacccagcgg actgtgtttc aagaggttta ttcccatcac       420
     agattcatga ccaacattta tattggcagg gacctccgtt tttgaaatta ccggaatctg       480
     aatggccaat tacatcgttc aaaccaattc aaccatcaca cttgccagat tattcggatt       540
     caacaaaacg cgtgtttagt aatggtgccc gaaaaggaag ttgaatggtt cacacgtttt       600
     tcgtcattaa gacgtatgca acgagtcaca gccataatgt atcggtttat aagacacacg       660
     cgcacgaaac gcgttccata tgtcgcaccc aaatatatac atgaccctat ctccgatgaa       720
     gaaatttcaa atgcgatgtt accgattatt cgtatgacac aatcgttaca ctttgtaagt       780
     ttgttgagga tcctacaagt acctactaca aagatagtcc ctcgttcaat tgcccaactt       840
     gcgccgtttg ttgataaaac caacattatt cgggtgggtg gacgtctccg aaattcatgt       900
     gtagcagcag aaactaaaaa cccaatatta ttaccaaaat caagtacgtt gacgacactc       960
     attattcgcc atttccactt gaatcatttc cacgctggac cccaattaac gtcatcgcta      1020
     atatcaagtt gttattggat aatatccagt cgatctgcca tacgttacgt tgtcttcaga      1080
     tgcgttgtgt gtgctcgcca tagggcatcg agtattcatc ctatgatggc cgacctccct      1140
     tctagtcgag taacattatg ccgaccattt ttgcatgttg gtatcgactt tgctggacca      1200
     cttatcatag ccgaaggccg tcgtaagaac gcacgatcga taaaatgtta cctttctatt      1260
     ttcgtgtgta tgactatcaa agctgtacac attgaagtgg tttcagacct ttcaacaagt      1320
     acgtttttgg ctgctttgca acgctttgtc gctcgacgtg gtaccccatc agacatttac      1380
     actgactgtg gaacaaactt taaaggagca gaacaacaat tacgtcatat gatgttagat      1440
     gccaccgcca aaacaacata tacaaatgca attttatgta agtggcattt taaccctcct      1500
     gcagccccac attttggtgg cctgtgggag gctgctgtaa aatccacaaa atatcattta      1560
     aaacgagtta ttggaactca acggttaacg tttgaagaaa tggtcacatt aacaagtcgg      1620
     attgaggctc tacttaattc tcgcccgata actccattgt ctgctgatcc taatgattat      1680
     cgtgcactaa cgccaggaca ctttcttatt ggtcatccaa tggttgaagt accagaaaag      1740
     gacgtaatcg acatacctca aaaccgcctc aatcgttggg aactcctacg acaaatgtat      1800
     cagtcactct ggaaaagatg gtcaacagag tacttatcat cgttgcaacg acgcacaaaa      1860
     tgggtagaca atcaaccaaa cgtcaagatt aacgacttag tattgataaa catgccgaat      1920
     caaccaccta tacactggaa actaggtcgc atacaacaag ttcatccgcg cgcagatggc      1980
     gtggtgcgtg tagccacggt gcgtactgaa catggcaccc taacacgacc aatagtcaaa      2040
     ctagccatcc ttcctcctga taattgatta ttcctgttcc tataattttc ctgttgatgt      2100
     gggtgaatta tttttattat tattttatat tgtaaattcg tgatttctat atatattata      2160
     tttgtattat gtaaattatt accacacgat gcgggaccgt gaagaggacc aatacaccat      2220
     caagtattat tgaaagctgg attacccttt caatggcggg agtga                      2265
//
ID   BEL2-I_Dmoj repbase;    DNA;    INV; 5850 BP.
XX
AC   scaffold_6541;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dmoj;
KW   BEL2-LTR_Dmoj; BEL2-I_Dmoj.
XX
NM   BEL2-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5850
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1010-1010 (2009).
XX
DR   Genome; scaffold_6541; Positions  203701  197852.
XX
CC   Positions [4863-5471] - Integrase core
CC   'CCTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           609..5828
FT                 /product="BEL2-I_Dmoj_1p"
FT                 /translation="MANLDASAVAPEDRVRFYKLKVQSVFERVKKLQSKVD
FT                 SDALADHSDSTLNVLLEHIDKLSHSFSKAHESLEELDFTEMSSNLRTDFDD
FT                 LIMVMQSTIMSEVQSRTAQVHHSSTFSRPSDPPRASAPRLQAAPALPPLKL
FT                 PTFSGGYANWADFYSMFSTIIESRPEISNMERLQHLRSCLDGAALDTVRSL
FT                 EISNDNYTIAINLLKQRYDNRRLIFQAHIVKILGLKRVENGSITKLRELSD
FT                 SFNVHMRALSSLGTTEQIASAMIAQILLQKLDEASQAKWEEKLDNSETALQ
FT                 IPRYEEVSSFLELRCRTLESMKFALTNYSSSKPMNSCSKVATSRSAFLVTG
FT                 HSTHSCNFCNDLEHTIYKCPRFANLSPSLRLNEVRKAGLCLNCLKGGHQSR
FT                 QCGSRSCRVCGVKHHTLLHLGHSSTSQAAIPPHQQSSTSRVQTIPQPSAPA
FT                 TTLLSKDRHSDVVLLATAVVLARNRFGELVPCRALLDSGSQLHLITARFAN
FT                 LLQLKRTKSVASVCGVGDSNVAMDGSSICLTLQAHASEYTTSITAMVATNI
FT                 TGRQPSSNVNTSNWSIPQNIVLADPAFHRPQRVDLLIGASLFYDLLCVGQI
FT                 KLMPGLPLLQKTRLGWVVSGGEARNHNSVLIASKTPLDPITDSCADIKLDS
FT                 LVRRFWEVERCSDSIVKFSKEDSDCEAHFARHYNRLASGQYTVRLPVKLSC
FT                 ELLGDSYEQARHRFLNLEKKLSRLPHIKSQYSAFLKEYLELGHMSRVPLNS
FT                 FHLCRYFLPHHCVLKDDSTTTKLRVVFDGSASTTTGHSLNDILMSGPVIQP
FT                 KLVDILLRFRSYPVALTGDICKMYRCVKVPEPDSYLQCILWRNSPDDELEV
FT                 FRLDTVTYGTKPASFLSVRAMHQLAVDERNAFPVGSDVLLRDFYVDDLISG
FT                 GNSVEEARLVMQETAGILACGKFKLRKWCSSHPMVLDGVTDCDKESLIRFN
FT                 DGSDITKTLGLAWDPASDQLLFSYLALNSASKPSRRSVLSSIARFYDPLGL
FT                 VGPVITKAKIFLQQLWRHKLDWDESLPSACHTAWLDICSNFGNGLSSAFPR
FT                 LSLIPGSKVEVHGFCDASIEAYGACIYIVSRGQHTISRLLCSKSRVAPLKT
FT                 LTVPKLELCGAELLARLMNEVARLGIFAGEFHCWSDSTVALSWINDEPGRF
FT                 NVFVSNRIATIQDLTSAMEWHYIPTTLNPADILSRGALPSDLNASLHWFNG
FT                 PGFLCKPRSQWPVSALPERTSIERRRTVLLVKDAVHDVSMDCKFVNSFGRL
FT                 QRTFAYVSKFIKKSHGPGITLADIRNGTHILLRMIQRTHLSDDINALRNKG
FT                 MVPSSSSLASLSPFLDEIGLLRVDGRLKNSTLNFDSRHPIILPKVHPVTRA
FT                 IIMHFHQRNLHAGPRAVLALVRSQYWPIGGRKTVASVIQRCVICFRARPRL
FT                 VEHIMADLPKDRVDGYRVFGVTGVDFCGPFFYKPESRNKAPVKCYVCVFIC
FT                 FATKAIWLELVKDLTTAAFLHALQRFICTRGRPSQIWSDNATNFLGARNQL
FT                 QELKRLFLSDTHQKAVKDFCLADSIEWHFIPPRSPHFGGLWEAAVKTAKHH
FT                 FYRCVGSSVLTYDELRTLVCNIAAVVNSRPLVSISEHPSDIDVLTPAHFIN
FT                 GGPPSSFSEPNLTGLNFNRLDAWQRVSYLQQVFWTRWRDEYLNLLQQRAKW
FT                 RTSKPGLAVGNIVLVKDENLPSLKWPLARIIELIPGSDGVARVALLKTEAG
FT                 EIRRATNKLCLLPLKDSVED"
XX
SQ   Sequence 5850 BP; 1518 A; 1376 C; 1313 G; 1643 T; 0 other;
     tttggtgacc ccgacgtgat tctctttcgt ttctttacat atttgcatat atatattgac        60
     agcatcacat acatacatac acccgtgaac ataagcattg tatatagcga ttagttgcgt       120
     gccgttactt tgccaattcg ccagacactc tttcgttcgg tctgcaatac actggcgccc       180
     gtaaaagtag tacacatgcg aaaacttctg caaatgacaa tctaataaag aatcaactaa       240
     tttctgaact atgtctatgg ttagtgactg cgtgttctat agcttcaatc tataagtgat       300
     taagtttaca taagcacagt gtaattacat gcttgccgtt attcttcgtt gacattgcac       360
     tctttcacca cggctgcgat acgagcgcgt ccataataat cgtaccggtg tgcaacaatt       420
     catacgtgta tattatttga gtaccataat ataattcttt gccagtttat taaagttgca       480
     agtactctgc tcgacaaata cgacttattc caagtctgcg ctatagcata tatacattta       540
     cttactcttg caatcgcgct cgcaccaacg actttgaact ctatcgtgtt gctcttgctg       600
     tactcgtcat ggcgaattta gatgctagtg cagttgctcc cgaagatcgc gtgcggtttt       660
     ataagctcaa ggtacagtcg gtatttgaac gcgtaaaaaa gctacaatcc aaggtcgatt       720
     cagatgctct tgccgatcac agtgacagca ctctaaatgt tctactggag catatcgaca       780
     agctaagcca ctcctttagc aaggcccatg aaagtctaga ggagctcgac tttactgaga       840
     tgtccagcaa tttgcgcact gactttgatg atttaataat ggtcatgcag tcaacaataa       900
     tgtccgaagt gcaaagtcgt actgctcaag tgcatcatag ttccacgttt agccgtccaa       960
     gtgaccctcc tcgcgcatcc gctcccagat tgcaggctgc acctgcgttg ccgccattaa      1020
     agctacctac gttcagcggt ggatatgcta attgggctga tttctactca atgttttcta      1080
     caatcattga aagtcggcca gaaatcagca atatggaaag acttcagcac ctccggtcct      1140
     gcctcgatgg cgcagcgttg gatacggttc gctctttgga aatttctaat gataattata      1200
     caattgccat aaatttatta aagcagagat atgataaccg acgtttaatc ttccaggccc      1260
     acatcgtaaa gatcttaggt ctcaaaagag tagaaaacgg atccataacc aagctgcgtg      1320
     agctatctga cagcttcaat gtccatatgc gtgcgctcag tagtctgggc acaacagagc      1380
     agatagccag tgccatgatt gctcagatac tgctacagaa gcttgatgag gcctcacaag      1440
     ctaaatggga agagaaattg gacaactcag agacggctct tcagataccc agatatgaag      1500
     aagtctcctc atttcttgag cttcgttgcc gtactttgga atcgatgaaa tttgctctta      1560
     caaactattc gtcaagtaag ccgatgaatt cttgcagtaa ggttgctacc agtagatcag      1620
     catttctcgt aaccggccac agtactcaca gttgcaattt ttgtaatgat cttgagcaca      1680
     caatctacaa atgcccaaga ttcgcaaact tgtctcctag tcttcgcctg aatgaggtcc      1740
     gaaaggctgg cttatgtttg aattgtctca agggaggtca tcagtcgcga caatgtggct      1800
     cgcgcagttg tcgggtctgt ggagtcaagc atcatacgct tcttcatctc ggccactcca      1860
     gcacatcgca ggcagcaatt ccgccccatc aacaatcttc aacatcaaga gtacagacca      1920
     tccctcagcc ctcagcacca gccactactc tcttatccaa ggatcggcac agcgatgttg      1980
     tgctcctggc taccgcagtg gttctggcaa ggaatcggtt tggcgagctt gttccttgtc      2040
     gtgcactttt agattcaggc tctcaactac atctcattac agccagattt gcgaatctcc      2100
     tgcaacttaa gagaacaaaa tcggtggcat ctgtatgcgg cgtaggcgac tccaatgttg      2160
     ccatggatgg cagcagcatt tgcctcactc ttcaagctca tgcatctgaa tatacaacta      2220
     gcataacggc tatggtagct acaaatataa ctggcaggca gcccagttct aatgtgaata      2280
     cgagcaattg gagcataccg caaaatatag tgctggcaga tccagctttc cataggccgc      2340
     aacgagtaga tctgcttatc ggagctagcc tgttttatga tttgctctgt gtgggacaaa      2400
     tcaagttgat gcctggactt ccattgttac agaagactcg tcttggttgg gttgtatcag      2460
     gtggcgaggc tcgcaaccac aactccgtgc taatagcttc aaagacgcct ttggatccga      2520
     ttacagactc ctgtgctgat atcaagttgg acagtctcgt tcgtcgcttt tgggaagttg      2580
     agcgctgcag cgattccatt gtaaagttca gcaaggaaga ctcagattgc gaagcgcatt      2640
     ttgcgaggca ttacaatcga ttggctagtg gccaatatac agtacgcctg cctgttaagc      2700
     ttagttgcga gcttcttgga gattcttatg agcaagcgcg acatcggttt ctcaatttgg      2760
     agaagaaatt gagtcgtttg ccgcatataa agtctcaata ctcagcattt ctgaaagagt      2820
     atcttgaact tggtcacatg tcacgcgttc ctctaaattc attccatcta tgcagatatt      2880
     ttcttcctca tcactgcgtt ctgaaggatg atagcacaac taccaagctt cgcgtcgtct      2940
     ttgatggatc tgcatctaca acaactgggc attcgttgaa tgacattcta atgtcaggtc      3000
     ccgtcattca gccaaaatta gtcgacatat tattgcgctt ccgatcttat ccagttgcac      3060
     tcaccggcga tatttgcaaa atgtatcgtt gcgtgaaagt acctgagccg gacagctatc      3120
     tacaatgcat tttatggagg aattcgccag atgatgagtt ggaagttttc aggcttgata      3180
     cggtaacata tggaacaaaa ccagcgtcat ttttgtctgt gcgcgccatg catcagcttg      3240
     ccgtagatga aaggaacgca ttcccagtcg ggtccgacgt actgcttcgc gatttctatg      3300
     ttgatgattt gattagtgga ggaaattcag tcgaagaagc aagacttgtt atgcaagaga      3360
     cagctggaat cttggcatgt gggaagttta aattgaggaa gtggtgttca agccatccca      3420
     tggtactgga cggcgtaaca gactgcgaca aggaatcgct cattaggttc aacgatggca      3480
     gcgacattac aaagacactt ggccttgcat gggatccggc atctgatcaa cttcttttct      3540
     catatctagc tctgaattca gcctctaagc cctccaggcg ctctgttctc tcgtctattg      3600
     ctaggtttta tgatcccctc ggcctggtcg gcccagtaat aacgaaagct aaaatcttct      3660
     tgcaacaact ctggaggcat aaacttgatt gggatgagag tctcccgtct gcatgtcaca      3720
     ctgcatggct agacatttgc agcaactttg gcaatggtct tagtagtgca tttcccaggc      3780
     tatcattaat accaggatcg aaggttgagg tccatggatt ctgcgatgcc agcatcgagg      3840
     catacggagc ttgcatttat attgtatcca gaggtcagca taccatcagc aggttgcttt      3900
     gctctaagtc tcgagttgcg cctctaaaaa cgctcacggt tcccaagctg gaactatgcg      3960
     gggcagagtt gcttgcgcgt ctaatgaatg aagtggctcg cttaggcatt ttcgcaggcg      4020
     agtttcattg ttggtctgac tctactgttg cgctttcttg gatcaatgac gagcccggac      4080
     gatttaacgt ttttgtttca aatcgcatcg ccacgataca agatctcaca tcagcaatgg      4140
     aatggcacta tatacctaca acactgaatc ccgcggatat attatctcgg ggtgcattgc      4200
     cctcggattt aaatgcatca ttacattggt tcaacggtcc aggtttcctc tgtaagccca      4260
     gatctcagtg gccagtatca gcacttccag aaagaacttc aattgagcgt cgaagaactg      4320
     tgcttcttgt aaaggacgca gtccatgatg tctctatgga ctgcaagttt gtgaattctt      4380
     tcggccgctt gcagcgtacg tttgcatacg tatcaaagtt tattaaaaaa agtcatggtc      4440
     caggaataac cctagcagac atccggaacg gcactcatat actgttaaga atgattcaac      4500
     gaacacatct ctcagacgac ataaatgctc ttcgaaataa aggaatggtt ccgtcatcca      4560
     gcagtctagc ctcgctgtca ccgttccttg atgagattgg gctgctacgt gtcgatggtc      4620
     gtctcaaaaa ctcaacttta aatttcgata gtcgccatcc aattattttg cccaaagttc      4680
     atccagtaac tagagccatc ataatgcatt tccatcagcg aaacttgcac gctggtcccc      4740
     gagcagtgct agcgttggtt cgttcccaat attggccaat tggaggtaga aaaactgtag      4800
     ccagtgtaat tcagagatgc gtaatttgct ttcgtgcaag gccccgactc gttgaacaca      4860
     taatggcaga tctacccaag gatcgagtcg acggctatcg ggtctttgga gtgactggag      4920
     tcgacttttg cggacccttc ttttacaagc ctgagtcacg aaacaaggcg cctgtgaaat      4980
     gctacgtttg tgtgtttatt tgttttgcta cgaaggctat ttggttggag ttagtcaagg      5040
     atttaactac cgcggcattt ttgcatgcac ttcaacgttt catatgcacc agaggaaggc      5100
     caagtcaaat ctggtcggat aacgccacaa actttcttgg tgcccgcaat cagcttcagg      5160
     agttgaagcg tctatttctg tcagacaccc accagaaggc tgtgaaggat ttctgtttgg      5220
     cagactcaat cgaatggcat ttcatccctc cacgatcacc tcactttggt ggcttgtggg      5280
     aggctgcagt gaagacagcg aagcatcatt tttaccgatg tgttgggtcc tccgtcctaa      5340
     cttacgatga gcttcgcaca ctggtttgca acatcgctgc tgtcgttaat tcacgccctt      5400
     tagtttcgat ttcagagcac ccatcagaca tagacgtgtt gactcctgcg catttcatca      5460
     acggtggccc tccttcgtcc ttcagtgagc caaacctgac agggctcaat tttaatcgtt      5520
     tggatgcttg gcagcgcgta agctatctcc agcaggtgtt ctggactcgt tggcgggacg      5580
     aatatctcaa cttgttacaa cagcgagcga aatggagaac ctccaaacct ggcttggctg      5640
     ttggcaacat agttcttgtg aaggatgaga atctaccttc acttaagtgg ccactagcca      5700
     gaataatcga acttatccct ggaagtgatg gcgttgcacg ggtagcccta ctaaaaactg      5760
     aagctggcga gataagaaga gctacaaata agctgtgctt gctgcccctt aaggattctg      5820
     ttgaagacta agtcttcaac ggggggagga                                       5850
//
ID   BEL2-I_Dpse repbase;    DNA;    INV; 7585 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dpse;
KW   BEL2-LTR_Dpse; BEL2-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-7585
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1011-1011 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   60489   68073.
XX
CC   Positions [2105-2686] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..4852
FT                 /product="BEL2-I_Dpse_1p"
FT                 /translation="MGHMKIVPASKVPKRHYFIPHHCVLKPESTTTKLRVV
FT                 FDASCKSTSGKSLNDILQAGPTVQSELMSILLRFRIHKYVFTADIEKMYRQ
FT                 VWMNPEDQFHQMIVWRNNPSEEIRYYRLKTVTYGTTAAPFLATKCLDHLAI
FT                 QYKDRLPVGSTTLKTDFYVDDCLTGANTIPEAIHVRQELNKILLPSGFKLR
FT                 KWCSNNEKLLQGIPKEDIVTDVKLGETLEHYSVKTLGLIWMPKKDTLCGRT
FT                 QKSQATRITKRVVCSELAQIFDPLGLFAPVVVKAKIFMQQLWELKLDWDDE
FT                 LPLQHQTEWKEYRDDLQTLNKMQIPRHIYDGKIPVTQELHTFVDASERAYG
FT                 AAVYVRATYKNNQVSVRLLCSKSRVAPTAKQSLPRLELCAAVLGAELTNRV
FT                 RQDLHMDRNTVSGWLWSDSTVVLSWINASSSTYHTFVANRIAKIQALTNQS
FT                 QWRHVSSANNAADVLSRGIAASRLADHNLWLYGPLFLHGSRDNWTKAPNIE
FT                 PSNLERKAKHVSLPITPSALGDELYTCKHSNSFHKLQRIVAYMLRFCYKTN
FT                 RANTTTLCAEELTHARTIILRTIQQVEFTAELKQFQRYKTVDKKSSIISLS
FT                 PFLGDDELIRVGGRLEEALLPYNAKHPVLLPYNDPIVKMILRELHEENMHC
FT                 GAQALRAIARQQYWIINDKTMARSIIHSCVRCTKARPKLMHQIMGNLPAQR
FT                 VTQARPFLNAGVDYCGPIAIHHKIRGKRPDKAYIAVFCCFSTKAVHLELVS
FT                 DLTTEAFLAALRRFLSRRGKCQTIHCDNATNFVGANNQLKELEDSIFSSKA
FT                 SALITNHCNKKQVDFKFIPPRAPSFGGLWEAAVKSAKRLLITTTNTASLTF
FT                 EELNTVIIEIEAILNSRPITPMSNDPTDTTALTPGHFLIGEPLTTPPDVNA
FT                 DHQGKTLVKRWELVSRLKHSFWKQWSTEYLQELQARHKWKTASPNVPEGLL
FT                 VLVKEDNLPVMKWPMGRIIKTYPGQDNHVRVVDVKTASGVYKRPITRLAPL
FT                 FPEDVAIKRPHNVISDTTEIDEPPTQRTTKLAPTLTSTLVVLLLMLPLAWS
FT                 QSINVTQFANKPGIFYEKLGTSRIATSEWTMIVYYDLDPYWKDMQLMSAGI
FT                 SELRYMCPELKNVPACNSIVQHFQHVYNELQAGSVLMKNSRKRRSPLDIIG
FT                 NVASSLFGVLDAKYAEEMTQVIEKVETNEDFLLHLLQNQTSIVDATINVVR
FT                 KDKLTTDNRLKTLEQHLATINRERGSYHSDHLTQAYLGLVAQLTLLTTTLQ
FT                 RMQSDISDVLIGIHHRRISPTLVSPEQLIDQLDQIRDHLPQDQMLPVTTKE
FT                 VIQLYRIMRAEGTPTAKHVIFKLTLPLVSTAQLEVFSIIPIPFWDSTSWSL
FT                 FDLRTTIVTVNIHRDQFMGTTQEEFRRCLKVHNEEFICFDHQTIFNVDNRC
FT                 EFQLFNNKTETLCQVTHTKADSVWLKTQHPNKWIFATHSTTKLQAVCNGVP
FT                 STITLEGTGLLSMSPGCTARNPKVSISTFSTTISEVKSTYTRFGDVNPPET
FT                 SPSPPMWQLKNQTSDFLQELDDLRQQLSAINQHELPHHLTTVQHHQLVAYA
FT                 ALAISILLIIAFIFRKKYQLWKPRPSNPDPATSSPPIPFTRRFTVDLNDG"
FT   CDS           6500..7585
FT                 /product="BEL2-I_Dpse_2p"
FT                 /translation="MEAYLTLESKVQRALAKSATPNTDNVQLPRISIPKFD
FT                 GDLLKWTQFFDLFSCMVRETNMPTVKKMWYLKTTVTGEAERLIRHIDLKEE
FT                 NYEAAWELLVDAYKNPRDVSNTVLNRFLNHQTINDDPKSLKELYITTIESL
FT                 ASLKGLGINISTWDPILIAIMRNKLDVTNKALYEQSLGSSKDIQALDTMLQ
FT                 FLEQRIRVLGTSKRPPASRREPKGTTCASANTGRARAPLCTFCKKASHWLY
FT                 GCEEFRSKSPSERLNWVQKQKMCVNCFRTNHKTNACPGRNCFKCDKKHNTM
FT                 LHLETASGAATESRTPTVGAASNNSYNLRATAKVAVEAENGQVANFRALLD
FT                 SGSQINLISERMASMLSKN"
XX
SQ   Sequence 7585 BP; 2470 A; 1874 C; 1573 G; 1668 T; 0 other;
     tatgggacat atgaagattg tcccagcatc aaaagttccc aaaaggcact acttcattcc        60
     acatcattgt gtactcaaac ctgagagcac caccacaaag cttcgggtag tattcgatgc       120
     ctcatgcaaa tccacaagcg ggaaatcttt aaacgacatt ctgcaggcgg gacccaccgt       180
     tcagagcgaa cttatgtcca ttctgctacg atttcggatt cataaatacg tgttcacagc       240
     ggacatagaa aagatgtacc ggcaagtgtg gatgaaccct gaggatcaat tccatcagat       300
     gatagtctgg aggaacaatc catccgaaga gatcaggtac taccgcctga aaacagtaac       360
     atatgggaca acagctgctc cgttcctagc aacgaaatgt ctggatcatt tggcaataca       420
     atacaaagac agactaccag tcggatcaac aacattaaaa accgatttct atgttgacga       480
     ctgtctaact ggagcaaaca cgattccaga ggcaattcat gttcgacaag aactaaataa       540
     gatattgcta ccgtccggat tcaaattgcg caagtggtgc tccaacaatg agaaacttct       600
     ccaaggaatc cccaaagagg atattgtaac cgatgtaaaa ctaggagaga cactagagca       660
     ctacagcgtg aaaactctgg gtctcatctg gatgccgaag aaggatacat tgtgtggacg       720
     aacacagaaa agccaggcta cacgcatcac caaacgggtg gtatgctccg aactggccca       780
     aatctttgac ccactaggac tctttgcacc agtggtagtc aaggcaaaaa tcttcatgca       840
     acaactttgg gagctcaaac tggattggga tgacgaatta ccattgcaac accaaaccga       900
     atggaaagaa taccgggacg acttacaaac tttgaacaaa atgcaaattc cccggcatat       960
     ctacgatgga aaaattccag ttacacaaga actccatacg tttgtggatg catcagaacg      1020
     agcatatggc gcagcagtat atgtacgcgc tacatacaaa aacaaccaag tgtcagtaag      1080
     actgctctgt tcgaaatcac gtgtggcgcc gacagccaaa caatcgctac cacggttaga      1140
     actttgtgct gcagtcctcg gtgccgagct cacaaaccga gtccgacagg atctgcacat      1200
     ggacaggaac acggtttcag gttggctttg gagtgattcc acagttgtgt tatcctggat      1260
     aaacgcatca tcatcaacat accatacctt tgtggcgaat cgaatagcca aaatccaggc      1320
     attaacaaac cagtcacaat ggcgtcacgt gtcatcggcc aacaacgcag ccgatgtcct      1380
     gtcgagagga atcgcagcaa gcaggctggc agatcacaat ctgtggttat atggaccact      1440
     attcttgcac ggatctcgag acaactggac gaaggcaccc aacatagaac ctagcaatct      1500
     tgagagaaag gccaaacatg tgagcttgcc aatcacacct agtgcacttg gggatgaatt      1560
     atatacttgc aaacatagca actcgtttca caagttgcaa cgcattgtgg catatatgtt      1620
     acgcttctgc tacaaaacca acagagcgaa caccacgacg ctctgcgcag aagaactgac      1680
     tcacgcccgc actataatcc tgcgaaccat acaacaagtc gagtttacag cagagttaaa      1740
     acagttccaa cgatataaga ctgtggataa aaagagctcg atcatatcgt tatctccctt      1800
     cctaggagac gatgagctca tccgagttgg tggtagactt gaagaagccc tacttccata      1860
     caacgcaaaa cacccagttt tgctgcccta caatgaccca atcgttaaaa tgattttgcg      1920
     ggagctacat gaggagaaca tgcattgtgg tgctcaagca ttaagggcaa tcgcaagaca      1980
     acaatattgg attatcaatg acaagacaat ggctagaagc atcatccaca gctgtgttag      2040
     atgcacaaag gcaagaccaa agctgatgca ccagatcatg ggcaatctcc cagcacaacg      2100
     agtcacacaa gcacgcccgt ttcttaacgc aggcgtcgac tactgtggac caatcgcgat      2160
     ccaccataag atccgaggca aaagacctga taaggcatac atcgccgtgt tctgctgctt      2220
     ttccacaaag gcagtacacc tggagctggt aagcgacttg accacagagg cattcttggc      2280
     cgccctgcgt cgattcttaa gtagacgtgg gaagtgccaa actattcatt gcgacaatgc      2340
     aacgaacttt gtgggtgcaa acaaccagct taaagaatta gaagactcta tattcagctc      2400
     aaaggcaagc gctctgatca cgaatcattg caacaaaaaa caagtggatt ttaaattcat      2460
     tcctcccagg gccccatcgt tcggcggcct ctgggaagcg gcggtaaaat cagcaaaaag      2520
     gctgttgata acaaccacga acacagcctc actgacattt gaagaactaa acaccgtgat      2580
     aatcgaaatt gaagcaattc tcaactctcg acccatcact ccaatgtcaa atgatcccac      2640
     tgatacaaca gcgctcaccc caggacactt cttgattggt gaaccattga caacacctcc      2700
     tgacgtcaac gctgatcatc aaggaaaaac attggtcaag cgctgggaat tggtatcgcg      2760
     cctaaagcat tcattctgga aacaatggtc tacagaatac ctccaagaat tgcaagctcg      2820
     gcataaatgg aagaccgctt caccaaacgt acctgaagga ttattagttt tggttaaaga      2880
     agacaacctt cctgtaatga agtggccaat gggtcgcatc attaagacat atcctggaca      2940
     ggacaaccac gtacgagtgg ttgacgttaa gacagcatct ggcgtataca agcgcccgat      3000
     cactcgtcta gcgccgctct ttccggaaga tgtggcaatc aaacgccccc acaacgtgat      3060
     cagtgacacc acggaaattg atgagccacc cacacagcga acaacaaaat tggcacctac      3120
     actaacatca acgttagtgg tgctgttgct catgcttcca ttagcatggt cacagtcaat      3180
     aaatgtgaca caattcgcaa acaagcctgg aatattttat gagaaacttg gaacatcaag      3240
     aatagcaacg tctgagtgga ccatgatcgt atactatgac ttggacccat attggaagga      3300
     tatgcaacta atgtctgccg gaatttcaga gttacgatac atgtgccctg aactaaaaaa      3360
     tgttccggca tgtaactcca tagttcaaca ctttcaacat gtgtataacg agctacaagc      3420
     aggaagcgtt ttaatgaaaa actctcgaaa acgcagatcg ccgctggaca tcataggaaa      3480
     tgtagcaagc agcctgtttg gtgttctcga cgcaaaatac gcagaagaga tgactcaagt      3540
     gattgagaaa gtggaaacca atgaagactt tctactacat ctgctccaaa accaaacatc      3600
     aattgtcgac gcgacaataa acgtagtcag aaaggacaaa ttaacaactg ataatcgcct      3660
     aaaaactttg gaacagcatt tggctactat caaccgagaa agagggtcgt atcacagcga      3720
     tcatctgact caagcgtact taggactagt agcacaatta acgctgctca caacaactct      3780
     ccaacgaatg cagtccgaca tatctgatgt cctaatcggt attcatcatc ggagaataag      3840
     ccccactctg gtgtctcccg agcaactaat agaccaacta gaccagatac gggatcattt      3900
     gccacaagat caaatgctgc cggtcacaac gaaggaggtg attcaactat acagaatcat      3960
     gcgagccgaa ggaaccccta ctgcaaagca cgtcatcttc aagctgacgc taccgctggt      4020
     ctcaacagct cagctcgaag tcttcagcat catcccaatt ccgttttggg attcaacaag      4080
     ctggagtcta tttgacctca ggaccaccat agtaacagtt aacatccacc gagaccagtt      4140
     catgggcact acccaagagg aattccgacg ttgtcttaaa gtacacaacg aggagttcat      4200
     ctgctttgac caccagacga tcttcaatgt ggacaatcgc tgtgagtttc aactgtttaa      4260
     caataaaaca gaaacactgt gtcaggtaac acacacaaag gctgactcgg tgtggctaaa      4320
     aactcagcat ccaaataaat ggatcttcgc aacgcattct acaactaaac ttcaagcagt      4380
     atgcaacgga gttccgtcaa ccataacact ggaaggaact gggctactct ccatgtcccc      4440
     tggttgcact gctcgcaatc ctaaagtaag catcagtacc ttcagcacca caatcagcga      4500
     agtaaaatcg acgtacactc gatttggtga cgtgaaccca ccggagacat caccctcgcc      4560
     accaatgtgg caactgaaga accagacatc agacttcctt caagagcttg atgatctacg      4620
     ccagcaacta tcagccatca atcagcacga gctgccacac catctcacca ccgtgcagca      4680
     ccatcaactc gttgcttatg cagccctagc aatatcaatt ctactgatca ttgccttcat      4740
     tttccggaag aagtatcaac tatggaaacc aaggccatca aatcccgatc cagccacgtc      4800
     atcaccccct atacccttta cacgccggtt taccgtcgac ttgaacgatg gttgaacaca      4860
     gtttcaacgg ccgggagaat gttcagttgc agaagtatgc ttaagcaata gcttataaga      4920
     cccgtcggca taacacagtg acaccgcgac acagtgttcc atttaacatg caatataata      4980
     cctcacgaca acacactagc cactgcagtg agttctgctg acaacacact agccactgca      5040
     gtgagttctg ctgacaatgc actctctccg ccactgcagt gagttctgct gacaatgcac      5100
     tctctccgca gagtgcgaag acagcggagg cagttgctga ccatcaaaat gtcgcaattg      5160
     cccaccagac actaaaatta tccataatac acaaaacata tattttacag actcagcact      5220
     tttgtacctt ttattaccta taaataagaa tcatttttgt caataaaatc agtatcagac      5280
     acagtaccat actgcctgtc actcatcttc catcgcaatc atcagaggct gtcgccgtgt      5340
     cttcagaccc tcccttgcgc accgtaggat acccactccg cagtccaact ggttcaagtt      5400
     ctagttgcga cgaccaaact gtagacggtt tatgtaccgt atgcaaccca gcttcctaca      5460
     cacacacaca cattaacatt tggtgacctc gaccttggtc atcctttcaa actgtcagac      5520
     aagctacagt gaaaggattc gatctggaca tcagattgaa gcagtcaaca ggacatcttc      5580
     aataaaaatt tggcaccagg ccatacactt acggtagcat ctcctaccaa taagtatcac      5640
     tctggcaaat ctgacatatt caggttatca gcccacagaa aaacagctat agaattcgac      5700
     taccaccaag gtaatcaatt tttgttgttc cgtgcgttcc atagattgga aacagcacaa      5760
     atccctccat ccaacacatc acctgtacta ttaccttgct gaccaacaac ggttgcgatt      5820
     cggagcgtat ccagctgcaa agcaaataaa acactcccaa cgggtcaaaa agtaataagt      5880
     acaaacagat agaatggata cacatatgga ggcagaagct gccgctacaa tggaaatgga      5940
     tgtgcagcaa gaaattggtg aggatatatc gaggtgcatt cggaactata aaaaagattc      6000
     ccaagaacga aagcaaacgg cctcttattt tcaagccaaa atatcagcac tagaaaatgc      6060
     gtggaatcgc ttcaacaaaa acgactccaa acttcgcgat acagacaaaa cggatgaata      6120
     cgtaaaattc cgggaagact tacgtacaac atgtaagcaa tacattgcga tgtttaccga      6180
     aggcatggat aagctatcac agacgtctag tgctcgtggg gaacgtcaaa tcgtctttaa      6240
     agaaaggcat gagaatcctc cggtagctcc caaagaaagc ggtctgatcc agcagtcctc      6300
     gaaggattac agcaaacttc tttcactatg tcgccgacaa aaggctatag tagagtccgt      6360
     taagcgcaat ctgaaacaac tttcagaggc ggaaggacgc acataaagtg atttgataaa      6420
     atcactatgg actcaagcgc aggaagtcca cttcacaatt catgaggaat acgaggaccc      6480
     agtggaagga ggatacgaca tggaagccta tctaacactg gaaagtaagg tccaaagagc      6540
     attggcaaaa tcagccacac caaacacgga taacgtgcag ctgccacgga tcagcatccc      6600
     aaagtttgat ggagatctat taaaatggac ccagttcttc gatctgttct catgcatggt      6660
     gcgtgagacc aacatgccta cggtgaaaaa gatgtggtat cttaaaacca ccgtcaccgg      6720
     cgaggcagaa agactgattc gacatatcga tctaaaggaa gaaaattatg aagccgcttg      6780
     ggaactacta gttgacgcat acaagaatcc cagggatgtt tcaaacacgg tactgaaccg      6840
     cttcctcaat caccagacaa ttaatgacga tcccaagtca ttaaaagagt tgtatataac      6900
     aaccatagaa tcccttgcat cactaaaggg attgggcatc aatatatcta catgggatcc      6960
     gatattgatt gccattatga ggaacaaact ggatgtaaca aataaggcct tgtatgagca      7020
     atcattggga agctcaaagg acattcaggc gctggatacg atgcttcagt tcttggagca      7080
     aagaattcgg gttctaggaa ccagtaagag gccaccagca tcaaggagag agccaaaagg      7140
     cacgacatgt gcatcggcaa acacagggag agcgcgagca cccttatgca cattctgcaa      7200
     gaaagcaagc cattggctct acggatgcga agaatttcgc tccaaatctc catcagaacg      7260
     actaaattgg gtacaaaaac aaaaaatgtg cgttaattgt tttagaacaa atcacaaaac      7320
     aaacgcatgc cctggtcgaa actgcttcaa gtgtgacaag aagcacaaca cgatgttaca      7380
     tttggaaaca gcatcaggcg cagcaacaga atcaagaacc ccgacggttg gtgcagcaag      7440
     taacaatagt tacaatcttc gggccacagc aaaggtggca gtagaagccg aaaacgggca      7500
     ggttgctaat ttcagagcac tgctagattc aggatcacag ataaacttga tctctgaacg      7560
     aatggcatca atgttgtcaa aaaat                                            7585
//
ID   BEL2-I_Dya  repbase;    DNA;    INV; 7139 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dya;
KW   BEL2-LTR_Dya; BEL2-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7139
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1012-1012 (2009).
XX
DR   Genome; chrU; Positions 7629380 7636518.
XX
CC   'ATTAG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2443..5997
FT                 /product="BEL2-I_Dya_1p"
FT                 /translation="MGAVVEIPTWDEINSFLEERYRPLEAIEEVRLHTSNS
FT                 QHTKEPRNPQPKRVKSVKSQVGPRVRSCDLCSRESHQVRQCPRFLQIKQKR
FT                 LCLNCFAKGHNLRECTSRHNCFTCKGRHNTLLHKESPATSTSAAQVHNPDQ
FT                 PIANTSVHFASNRQGILLGTAIVQVCHQGENFPARALIDSGSEGTFISEKL
FT                 ATQIKLPCQAVRTTITGLNQTSTGVSQRMCHFQMGTAAKPMLKIDTTALVL
FT                 PNLAGNLPTSSIDRSILGRLPNIPLADPLFFQPSQLDLLIGEDILPSVLLS
FT                 GLKPNLCGSLLGQDTIFGWILTGPVSTATSRVSSFTTKISIESEPTMETIL
FT                 TKFWEVEDLPCKVVKESDNLCEENFARTTIRSRDGKYVVSLPFKDAEHINL
FT                 GHSRSFALAQFLRNETRLKRDPILKDTYDSVIKEYIDLGHMKPVPPSTDTV
FT                 NFYLPHHAVFKPESTTTKVRVVFNASSPSSNGNSLNDILHPGPVLQSDLTL
FT                 QILKWRTFQFVFNADITNMYRQILLNPAHTAFQRILFRDDRGDIRDYELKT
FT                 VTFGVNCAPFLALRTLRQLSEDVHALYPRSSRIISDYMYVDDVLAGAHTKV
FT                 EATLAIQELRTALSSAGFPLRKWTANERTLLKALPSDQLLSGDFLDIEEVS
FT                 TTKTLGIRWNAKADEFNFVPTELVVNANYSKRNVLSQIAKLFDPAGWLSPF
FT                 VVQAKILMQDIWLAGIGWDEFLPAELRQRWHDFLRSHSSLHKVRVPRWVQF
FT                 RPGAQVQIHGFCDAFQKAYGAVIYVRIQYDGGISLSLLTSKTKVAPVKTVS
FT                 LPRLELCGADLLADLWAAILPHIPFGRIETFFWTDSTIVLAWLNKPPCQWT
FT                 TFVANRVTKIALNTDASQWSHVRSEHNPADLASRGVPAEELASSDLWWHGP
FT                 SWLIQPQVSWPTSHEAVSDLELERRSVRCHLACPGWDLLVRFSNFNRMLRV
FT                 MAFVQRFINRCRRIPTPSSTDLSSKELAHIQLMLIRQTQRADYPEEYNILQ
FT                 SKGQLPSSSCILNLNPFLDADGIMRSCGRLTASDSLSYEERHPILLAYHSK
FT                 LAELLVTFTHPISIHGGNQLMVRLIRTRYWIPKLRNLIKRVTTTCKVCVIH
FT                 RKKVQSQLMGKLPQSRATYSRPFTHTGLDFAGPFDVKSYSGRACRITKGYV
FT                 CVFVCFNTKAIHLEATSDLTTEKLGG"
XX
SQ   Sequence 7139 BP; 1761 A; 1846 C; 1582 G; 1950 T; 0 other;
     ttttgtggtc cttcgtcagc cggagtactg cacgccattt tgttcaattg taagccttgg        60
     ccggcagaag tttttacatc gttccctgca tgtgtgtaca tatgtgtgat agttctaatt       120
     ctacatttgc ttccaaaact ccaagtgtca tcaatttcct acattctttt attcttggca       180
     agtgatcgtt tttttttttt gtttttgcat aaacctacat acatacatta cacatttggt       240
     tccagaattc caattttccg attccgaatt ccgattttct acattcttct attctttgca       300
     agtgatcggt ttttttttgt gcataaccct acaaacatac atacattaga catttggttc       360
     cgaaattcca agtgcatcga ttgtctacag taatttattt cttttgcaac tgatcgattt       420
     gcaattaata gttcccaatt gtccatatta acatataaac atacataaac atacatacat       480
     acattagaca tttggtttct aaaattccaa gtgtcatcga ttgtctacat taatttattt       540
     tgttcaactg atcgtttttt tgcataaaca aatattaatt tgtgcaatta atagttccca       600
     attgtccata gaaacataaa catacataaa catacaacac atacacattt acatattcct       660
     acatttactt tggccacagt aacagtgtcc ttacactgcg ttacatttct acatttcgca       720
     tttctggtgg acggtactgc tacatttggt ttctaaaatt ccaagtgtca tagattgtct       780
     acattaattt cttttgttca actgatcgtt tgtttgcata aacaaatatt aatttgtgca       840
     attaatagtt cccaattgtc catataaaca taaacataca taaacataca acacatacac       900
     atttacatat tcctacattt acttcggcca cagtaacagt gtcttcacac tgcgttacat       960
     ttctacattt cgcgtttctg gtggacgata ctgctacatt ctaaattttt tcggacggta      1020
     ctcaaatcac cgtatggttt cggttttccg tcagtgcaca tcagtaccat cccgcatttc      1080
     ctacattccg catttctggt ggacggtact actatattct gaattttttc ggacggtatt      1140
     caaatcaccg tattgtttcg gttttccgtc agttcacatc agtaccattc cgcttttctc      1200
     cattccgcat ttctggtgga cggtacttct acattctgga ttttttttgg acggtactca      1260
     ggtctgcata tttgttttac ggtttccgca aagtaaactt tgcgtcagat caaacgaccg      1320
     tttcggatag ttgcatctcg acgttagtta actgtatttg gatcgtttta gtggcttgag      1380
     tacagagatt aacacgtgtc tactattcca ttcctgcagc aaatccttgc taataatcct      1440
     aaaataatta caagcatcat tctccagcca atttattcgg aagaatcaag tcaccagttt      1500
     acacggttgt cctctattcc tttttctggt attaattttg cgcttattct caaacaacta      1560
     taatgatgtc tgaagcaggc cagaagcggg atcctagccc aaggtacgca gaagccggac      1620
     ccgctgggaa tttgagatca aaaactagaa cctccttaga cgatgcggtg cttgatttaa      1680
     taaccaccag cgaccggctt agcaaatttg aaagccagat ttgtgcggca tcctcgtcct      1740
     ctgccgagcc taatgctttt acactaaaga tccgcctaga ccaaatccag tccctctggg      1800
     acaaggttga gcgggaatac gaagcagtct cccgtctagc ccttcacgaa ggaagtggcg      1860
     aaagcggcag cttcagagca aatatgagaa ttgctacttg gtttatgaga ggtgtgcttc      1920
     ccaattaaac gaacatattg cccgtctgtc cgcccctagt tctcagggga gttcaaatcc      1980
     gtccgttgag acgttctcga agggttgcag gcttccgcca tgtgacacgg aaatcttcac      2040
     tggagattgt ctgcggtggc ccaccttccg ggacctattc acagcgatct acatcgataa      2100
     ttccaggctg actccagtgg aaaaattatt ccacttaaac gccaaaacta gcggcgaagc      2160
     tcacgctatt gttagcaagt ccccccttac aaattctggg ttccaatccg catggtctgc      2220
     ttttcaagag cgttttgaaa acaagcgact cttagtaaat agccagttga aggttctgtt      2280
     cataagcata agcaccgaat caggaacggc cttgaaggat cttcagagca cgattcaagg      2340
     gtgtttgatt gccatggaac actccaatat ctccacagaa aattgggatt gcattctgat      2400
     tttcttctgc tcttccaagt tgccaacagt cactctctca ttatgggagc agtcgttgaa      2460
     attcctacct gggacgagat taattcgttt ctcgaagaga gatatcgccc gctagaagcg      2520
     attgaagagg ttcgacttca tacttccaac tcacaacata ctaaggagcc caggaaccca      2580
     cagccgaaaa gggtaaagtc ggtaaagtcg caagtcggcc cacgtgtacg ctcctgtgat      2640
     ctctgctcca gagagtcaca tcaagttcgg cagtgtcctc gtttcctcca gatcaagcag      2700
     aagcgattat gccttaattg cttcgccaaa ggacacaatc ttcgagagtg cacaagtaga      2760
     cacaattgtt tcacgtgcaa gggccgccac aacacgctgc ttcataagga aagtcctgct      2820
     acttccacca gcgcagcgca ggttcataat ccagatcagc ccattgcgaa cacttctgtt      2880
     catttcgcct ccaatcggca gggcatcctt ttaggaacgg ccattgtcca agtctgtcac      2940
     cagggagaaa actttccggc acgggctttg atagactcag gctcagaggg caccttcatc      3000
     tccgagaagc ttgcaacaca aatcaagctt ccttgtcagg ccgtgagaac tacaatcacg      3060
     gggctgaacc aaaccagcac aggtgtctca caaaggatgt gtcatttcca gatgggcacg      3120
     gcggcgaagc cgatgctcaa gatagacacg actgcgttgg tgttgcccaa tctggccggg      3180
     aatctgccga cgagttcgat cgatcggagc attctcggaa gacttcccaa tattccgttg      3240
     gctgatccac tctttttcca gccctcccag ctcgaccttc taatagggga ggatattctt      3300
     ccgtctgtcc tcctctcagg cttgaagcca aacttatgtg ggtcactgct agggcaagat      3360
     accattttcg ggtggatttt aaccggccca gtttctacag ccactagtag ggtttcgtcc      3420
     ttcacaacaa agatatccat agaatcggaa cctaccatgg agacaattct cacaaaattt      3480
     tgggaggtgg aggatcttcc atgtaaagtg gtaaaggagt cggacaactt gtgcgaagaa      3540
     aacttcgctc gaacgactat caggtctcgg gacgggaaat atgtagtatc cctacccttc      3600
     aaggatgctg agcacatcaa cttggggcat tccagatcat tcgctctcgc acaattccta      3660
     aggaatgaga ctcgcctgaa aagggatcct attctcaaag atacctatga ctcagtgatc      3720
     aaagagtata tagatcttgg ccacatgaag cctgtgcctc cgagtacgga cacggtgaat      3780
     ttttatcttc cccaccacgc ggttttcaag cccgaaagta ctaccacaaa ggtccgtgtg      3840
     gtattcaacg catccagtcc ctcgtcaaat gggaacagcc tgaatgacat cttgcatcca      3900
     ggaccagtac ttcagtccga tctcaccctc cagatcctaa agtggcgaac attccaattt      3960
     gtctttaatg ccgatatcac caatatgtat aggcagattc tcctaaaccc tgcacacacc      4020
     gcttttcaga gaattctctt tcgagatgat cgtggggaca tcagagacta tgagcttaag      4080
     actgtcacgt ttggagttaa ttgtgccccg tttctagctt tacgaacgtt gcggcagctg      4140
     tccgaggatg tccacgccct atatccacgg tcgtctcgaa taatttcaga ttatatgtat      4200
     gtggacgatg tgcttgcagg agcccacacg aaggtcgagg ctactttagc cattcaggag      4260
     ttgaggacag ctctgagctc cgcaggattt cctctccgca agtggacagc aaatgagcga      4320
     actctcctaa aggcacttcc ttcagaccaa ctgctctcag gtgacttcct cgacatcgaa      4380
     gaggtgagca ccacgaaaac gttgggaata cggtggaacg ccaaggcgga tgagttcaat      4440
     tttgtcccga ctgagcttgt tgtcaatgcg aattattcca agcgcaacgt cctatcgcaa      4500
     atcgcaaaac tgttcgatcc cgctggatgg ttgtccccat ttgtagtcca ggccaagatc      4560
     ctaatgcagg atatatggtt agccggcatt ggatgggacg agtttctccc tgcagagcta      4620
     cggcaacgct ggcatgattt ccttcgcagc catagttccc tccacaaggt tcgcgtcccg      4680
     cgttgggtac aattccgacc gggagcacag gttcagatcc acggcttctg tgatgcattt      4740
     cagaaggcct atggggcagt gatttatgtt cgcatccaat acgacggagg catttcgttg      4800
     agtctgctca cgtcaaagac taaagtcgcc cctgtcaaaa ccgtttcact cccgcgctta      4860
     gaattgtgtg gtgcagatct tcttgctgac ctgtgggctg caattcttcc tcacatcccg      4920
     tttggtcgaa tagagacgtt tttctggact gattccacca ttgtgttggc atggttgaac      4980
     aagccaccat gtcaatggac caccttcgta gcgaatcgag tgactaagat tgctctaaat      5040
     acagatgcca gccaatggtc acatgtgcgt tccgagcaca atccagcaga tctagccagt      5100
     cgtggtgtcc cggctgaaga gctggcaagt agtgacctct ggtggcatgg cccgtcgtgg      5160
     ctgattcagc cgcaagtttc ctggcccacg tcgcacgaag cggtatcgga ccttgaactc      5220
     gaaagacgat ccgtccggtg ccatttagcg tgtccaggat gggatctcct agtgcgtttt      5280
     tcaaacttca atcgcatgct gcgagtcatg gcttttgtgc agcggttcat caaccgctgc      5340
     agacgcattc ctacgccttc ttctacagac ttaagcagta aagaactcgc ccatatacaa      5400
     ctcatgctta ttaggcaaac tcaacgggcc gactatccag aggaatacaa catcctgcaa      5460
     tccaaaggac agcttccctc gtccagttgt atcctcaacc ttaatccgtt cctggatgct      5520
     gacggcatca tgaggtcatg cggtcggttg actgcctctg actcgttatc ctacgaggaa      5580
     cgtcatccta tccttttggc gtaccattcc aaactagcag agcttctggt cacatttact      5640
     caccctatct ccatacacgg gggaaaccag cttatggttc gtctcatccg gacgagatac      5700
     tggattccga agctgcggaa cctgatcaaa cgtgtgacca cgacctgcaa ggtgtgtgtc      5760
     attcaccgga agaaggtgca gtcccagcta atgggtaaac tacctcagtc cagagcgacc      5820
     tattcgcgac cctttacaca cacaggactc gacttcgcgg gaccgtttga tgtcaaaagc      5880
     tattcaggtc gtgcctgtcg aatcacgaag ggctatgtct gcgtcttcgt gtgcttcaat      5940
     acgaaggcca tccatttgga agccacttcg gacttgacca cggagaaatt agggggttaa      6000
     ggggtgttca aagggtttat cctggctctg atgacaaagt tcgcgtcgta gacgtccgca      6060
     cggcccgtgg tatcctcgaa gggccaattt ccaaattagt tttccttccc gtagacaaac      6120
     atgtccaatg tctatgcgtt cattgtccat aactgtgaga gtaaagcgta tccactaatt      6180
     attatttttt ttgttctatc ctccagtcgt tctttttctc tctgcttccc tcatctcttt      6240
     gcgccagcca tgccgtccca tcgtaaccaa cgtcgccagc tcatcgacag atgttctcgg      6300
     ggaactcgat cgttccgata ccgagtctgt caggggattc atccgcttcg gacgtgttcg      6360
     cggtttctcc ggctagatgc agagcggcgg ctccgtgcgg tcctatcaat aaatattgcc      6420
     cgaactgctt ggcgcgccag cattccggag gctcgtgccg gagtgagtgt cgctgtcgag      6480
     tatgtgggga cgctcatcac accttgctac atctccatcg gcgggaaaag cgagagcggt      6540
     ctgctagcgc ggacaggccc atcgagacgc cagagccgaa ggccaacatc gagcaacccc      6600
     gcctctcggc agtgctctcc cacactgcaa cggctatcct gcccaccgtc aatctgcggt      6660
     tcgacatcgg ggacaagcgc ttcgatgtgc gggccatggt agatgcgtgc tctacttcga      6720
     gccgcattga cggatcactg gccgaggcca tggccctccc tatcctggga gtcggtgatg      6780
     agagggtgtg cagagccact ctcatcccga ttcatacaga gacgccacgg attgaggtgg      6840
     tgttccacgt cgaggagcag ctgcgaatgc gaacttctgc ccgagagctg cctgacgccg      6900
     ccaaaacagt gttcaccaac ctcatcctgt cggaccccag tttccacagg ccggctggta      6960
     cctccgtcgt gctaggtgcg gatgtgtatc ccacgctcat ccaacctggt gtcatgcaca      7020
     gccagaacgg gcgcatcgta gcacagagca cggttctggg atggatgctc tccggaacat      7080
     acacccactg atgcatcgcg gattcttttg caatctgtgg cattgcaagg cgggcggga       7139
//
ID   BEL2-LTR_AG repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL2-LTR_AG is a long terminal repeat from the BEL2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL2-I_AG; BEL2-LTR_AG; BEL2_AG; Bel clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-458
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL2_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 11-11 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL2-LTR_AG is a long terminal repeat from BEL2_AG
CC   retrotransposon.
CC   There are more than 50 copies of BEL2-LTR_AG in the genome.
CC   They are ~1% divergent from the consensus sequence.
CC   See comments for BEL2-I_AG.
XX
SQ   Sequence 458 BP; 128 A; 106 C; 96 G; 128 T; 0 other;
     tgttacgcac gcgattctaa atttcttttt tttaccaatc taatcgtagt aaccattgtt        60
     tatccttcca agtcaaaata agatgtttct ggaaacacga attatcccgt ccgaacggat       120
     attcgggtaa acttgggagg ataattttag tataaaagta ggccatattt tgaataaagc       180
     aggattcaaa cgcagaagct cttggagtaa agaggtttaa ttctaaatat ccgaaatagg       240
     acagagcccc tggatttccg agccaaacac ccccttccgt ctgcataggc ttcccaacct       300
     tggatcagaa gcaactagcg ggaaggactg gttagtaggc gaagtatcaa atactctgtc       360
     cactctgctg ctgtttgttt ctcctccgtt acaaccctgc aactcttgct gagggccaaa       420
     ccttcgcgtg gcctgccgga gaagctcggt tcgtaaca                               458
//
ID   BEL2-LTR_AP repbase;    DNA;    INV; 545 BP.
XX
AC   Contig56303;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2AP; BEL2-I_AP;
KW   BEL2-LTR_AP.
XX
NM   BEL2-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-545
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 432-432 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 545 BP; 136 A; 134 C; 100 G; 175 T; 0 other;
     tgttccgtac agttttgcga caatgcatta acgcatagtc gcttgtgact atctactcaa        60
     tataattatc aaccggtccg ccgatagcat cggctcgcat atctaatata ccaactagtc       120
     agtcttggcc cgcaggcgta cgcagtggtc gtctccgttg gtttgcgccg tacgtgcctg       180
     tgaccaaata acgacccgcg cttccatacg catatgggtg agctaatacc cgcgcttgca       240
     tacgcacatg ggtgattaat attcgcgcct tcatacgcat acatgtcgtg ttgtatctta       300
     gtgtcgttat aaagagattg gacacacctt ggagcacaca gttatcagcg gtcaatccat       360
     cttcaccatc ttcctcccac tacgtttcat cacttcatac tcatcaatac caggttccgt       420
     ccatttgtgg ttgtgtgagt cggctatacg ccacattatt gtattgtcct ttgagactat       480
     ttattattat tgttataata ctaacaccat aaattaaact atatatatat tatttattgt       540
     attca                                                                   545
//
ID   BEL2-LTR_Dmoj repbase;    DNA;    INV; 372 BP.
XX
AC   scaffold_6541;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dmoj;
KW   BEL2-LTR_Dmoj; BEL2-I_Dmoj.
XX
NM   BEL2-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-372
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1013-1013 (2009).
XX
DR   Genome; scaffold_6541; Positions  197851  197480.
XX
SQ   Sequence 372 BP; 111 A; 82 C; 68 G; 111 T; 0 other;
     tgttgggctc agcaatcatc gcttcattgt aattaagagc ggcagttcat agagtatgtt        60
     atcatgtaag agaatttgta acggagatca cgctctccct tttgcgttgt ctctttcacc       120
     cacgcaccgg ctcagcttaa tccgccggct cgcgtacatt gtagttagta tgcaattaac       180
     tcttgtttag agcagatgca gtgttagatt gactattaca aacatagtag cggacagcac       240
     gacagcctag tcgcttgctc gcgtctatca cataaactct gtaaactcta ataatcgcta       300
     ataaactaat cactaagtaa attcaatcgt ttaataaatt aaagctattc gaaaaatctc       360
     gatagctcaa ca                                                           372
//
ID   BEL2-LTR_Dpse repbase;    DNA;    INV; 207 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dpse;
KW   BEL2-I_Dpse; BEL2-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1014-1014 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   60282   60488.
XX
SQ   Sequence 207 BP; 65 A; 59 C; 44 G; 39 T; 0 other;
     tgaagcgttc gtattaccac agataatagc tgaccaacca gctcaggcac tcgatccaga        60
     gagcttaaac ataccaagca ggatctcact ggcagatcca aacttccata cgccaggcaa       120
     aatcgacatg ctaatcggag ccgagcatta ttactcgttg ctgctaccag atcaacagca       180
     gctaaggaca ggaggcccgc tgctaca                                           207
//
ID   BEL2-LTR_Dya repbase;    DNA;    INV; 310 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL2_Dya;
KW   BEL2-I_Dya; BEL2-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-310
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1015-1015 (2009).
XX
DR   Genome; chrU; Positions 7629070 7629379.
XX
SQ   Sequence 310 BP; 86 A; 87 C; 49 G; 88 T; 0 other;
     tgtttactcc agctcccgtg tgccagttcc acgcgtccct aaatggagaa gggaatccac        60
     ccactctctt ttgaaaaagg gagtattctt ccataaggga ccgctggcca cacctttttt       120
     tttttctcac ttactttttt tctacaagaa cacgaagaca cgattttgga gcaacctttt       180
     ttatacacat ataaccactg aataaagact attttttgga gaaaccccaa ccctcgccgc       240
     tgcgttttta attcaagtca gaacaatcca gttctcagcc gcaacaaccc ccagcagagc       300
     cattactaca                                                              310
//
ID   BEL3-I_AG   repbase;    DNA;    INV; 5476 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL3-I_AG is an internal portion of the BEL3_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL3-I_AG; BEL3-LTR_AG; BEL3_AG; Bel clade; PHD zinc finger;
KW   integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5476
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL3_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 12-12 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL3_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL3-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL3-LTR_AG
CC   LTRs. The BEL3-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 4 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence. There is no tRNA-like PBS at the 3' end
CC   of
CC   BEL3-I_AG.
CC   The consensus sequence encodes one protein: a 1749-aa BEL3-I_AGp
CC   (positions 204-5450). BEL3-I_AGp is composed of the PDH domain
CC   (aa positions 12-59), reverse transcriptase (positions 740-940)
CC   and
CC   integrase (positions 1440-1610) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..5450
FT                 /product="BEL3-I_AGp"
FT                 /translation="MQEESAVIADFTCAVCDKADSVDSLLQCDFCDKWYHY
FT                 ECAHVDKTVETRAWWCAECEVKTKLASGKKDDEIARLKREMEALKATTEKA
FT                 LALIREKDAEVARLSKSSERTSFSPGESLPCSTAKRISVNEEGDLSQSQIA
FT                 ARQAVRYELPSFNGNPEEWPIFLSTFRRSSRTFGFTEDENILRLQGALRGK
FT                 ALRTVQGRLRHADNLEEILSALEKSYGRPDVLVNTLLEQIRESPPIKSERL
FT                 DSFIEYGDLVAEICSTIKASGTSDRLYDAALLQELVDRMPAYLRWSWGMHS
FT                 QELKSVTMSEFGAWIQKATDGAMAVTPPQLKKKTTTRQVHAQHVETHQPQP
FT                 RRHRECALCNSDTCGTIAECRVFNRLSVADRWDKVRTLKLCKRCLGKHYGP
FT                 CSKRDDCGVQGCVAKHHRKLHRVTSEERVEINHHGTRSDGTLLRYVPVKLH
FT                 GESGPICTHALLDEGSTVTLMEQELAGQLGVSGVLDPLCLQYSAGERRDER
FT                 DSERVAVQVSSAEENASAFSMADVRTVSRLSLPIQSVDVNELKRKYKHLEA
FT                 IPAASYEAVSPRLLIGIDHYRLTRPLKTIEGQPGQPTATKTRLGWLIFGKC
FT                 TDNANDTSIVQPESSYHVCDCQGETSRADRMMAAYFEVEGYGPAKEPLLSK
FT                 EDQRAMSILQNNTKHVDGRYTTGLLWRSDNVFMPENRQMALSRMECLERKM
FT                 SRDTSLAEKINAILEDYLEKGYARPIRADELKTFYPRKWYLPVFPVTNPHK
FT                 PNKVRLVWDAAAEVRGISLNKKLLTGPDLLTPLQAVLFRFREYRVAVAADI
FT                 REMYHQVRICDDDVHSQRFLWRWGNTNAEPQEFVMLRMTFGAACSPSTAQF
FT                 VKNENAEKYRSLYPRAVRCIHEEHYVDDMLTSVETEPEAIELAYQVSLIHN
FT                 NAGFSLHNWLSNSIRVVTAVKGTESTLKEMDFEPCLKPEKVLGMWWDTTTD
FT                 SFGFKLSRVRHLELARKDKPPSKRQMLRTLMSIYDPLGLIAGVLFYLKVLL
FT                 QEVWRLHLGWDDEVPEEIQHKWDAWMERLPELESFIIPRCYRQLASLTESS
FT                 LQLHVFVDAGADGYAAVAYFRFECHGRIEVSLVGSKAKVAPLKYLSVPRLE
FT                 LQAAVMGCRIASSITSAHRETISGSYFWTDSTDVIDWINADHRKYSIFVAH
FT                 RVAEVLDTTNVDDWRWLPTKLNVADEATKWTNLQHHLASERWFSGPEFLQL
FT                 PEAEWNIPRRVPSETSEEVRKKDRLKLVGIHIARPIFIDYERFSRWTRLVR
FT                 TMAYVCRYVNIITKTKSPSTGPLNRDEIQRAETVILRDVQRNAFTDEYAIL
FT                 WKARENSTTPSWKSPIPRSSLLFKRSPYMDEDGLLRLSGRIDRCRYVDPGR
FT                 KRPILLPRRHRVSELIVDDVHRRYKHGSQETVVNEVRQRFDIPALRSVCRH
FT                 VRLQCRTCTLLYAKPASPEMCELPAARLAAFSRPFSYTGIDYFGPMVIVNG
FT                 RKTEKRWGVLFTCLTVRAVHIELVQSLSTSDCLMAVRSFMARRGTPIEIVS
FT                 DRGTNFVGADRELKEAAERVDSAILNEFGSPDPVWKFNPPAAPHFGGSWER
FT                 MIQSVKRMLSRTLTERHPTEAVLSAALIEVENMLNSRPLTHVPVDGEDEEP
FT                 LTPNHFLLGSSAGMKPLVKPDDSPAGLKQNWRAVQAKMNELWKKWIKTYLP
FT                 TLVRRTKWFESCKPIETGDVVLIVDENSPRNCWPRGRVERVVPSKDGVIRR
FT                 VVIKTAKGTMLERPVVKLVSLNVAPRVIV"
XX
SQ   Sequence 5476 BP; 1433 A; 1269 C; 1551 G; 1223 T; 0 other;
     ttctaaaaat tcagctaaaa ttctatttaa aaactcagtc ttataattct tctaaattcc        60
     tctcacacga gctgtgcaaa ttcggctcgt tctctacttg ctctattata ccacgcggta       120
     agcgctgaga acaaaggact gttcggtaag gtacacgcac atacaaatac acagccaacg       180
     catccgaatc gtgtagtgca aaaatgcaag aggaaagtgc agtgatcgcg gactttacgt       240
     gtgcggtgtg cgataaggcg gattcggtag attcgttatt gcagtgcgat ttttgcgata       300
     aatggtacca ttacgagtgt gcgcacgtgg ataaaacggt agagacgagg gcatggtggt       360
     gtgcggagtg cgaagtgaag accaaactag cgagcggcaa gaaagacgac gagatagcgc       420
     gcttgaagag agagatggag gctcttaaag ccacgacgga gaaagcgtta gctttgatac       480
     gggagaagga tgcggaagta gctcggctca gtaagagcag cgagcgaacc tcgttttcgc       540
     ccggggaatc gcttccttgc tcaacggcta aacggatttc ggtcaacgaa gaaggtgacc       600
     tgagccaaag ccaaatagca gcccgtcaag cagtgcgcta tgaactccct tcattcaatg       660
     ggaatcccga ggaatggccg atatttctgt ctacctttcg aagatcgtct cgtacgtttg       720
     ggtttaccga agacgaaaat atccttcgat tgcaaggagc gttacgggga aaagcactac       780
     gaacggtgca aggccgtctc cggcacgctg acaatctgga ggaaatattg agcgcgcttg       840
     aaaaatcata cgggcgaccg gatgtgttag tgaatacgtt gctcgaacaa attcgcgaat       900
     caccgccgat taagtccgag cggctcgata gttttatcga atacggcgat ttagttgctg       960
     aaatatgttc aactataaag gcaagcggaa cttctgacag attgtacgat gcagcgctgc      1020
     ttcaagagct ggtggaccgt atgccggcat atctgcgctg gagctggggc atgcatagtc      1080
     aggagctgaa aagtgtgacg atgagcgagt tcggcgcctg gattcagaag gcgaccgatg      1140
     gagcaatggc ggtaactcct ccgcagctga agaagaagac gacaacgcga caagtgcatg      1200
     cgcaacacgt ggagacgcat cagccccagc ccaggaggca tcgagagtgc gcgttgtgta      1260
     acagtgatac gtgcggtacg atcgcggagt gtcgggtgtt taaccggttg agcgttgctg      1320
     acaggtggga caaggtgcgc accttgaagt tgtgcaaacg atgtttgggc aagcactacg      1380
     gcccgtgctc gaagcgtgac gactgtggtg tccaaggatg cgtcgctaag catcaccgga      1440
     agttgcatcg tgtcaccagc gaggaacgcg tggagataaa tcatcatgga acgcgctccg      1500
     atggtacatt gctgcgttac gtgccggtaa agctgcacgg tgagagtggt ccaatttgca      1560
     cgcatgcgct gttagacgag gggtcgacgg tgacgttgat ggagcaggag ctcgccgggc      1620
     aacttggggt tagcggcgtt cttgacccgt tgtgtttgca gtacagtgcg ggagagcgac      1680
     gcgatgaacg tgattcggaa agggtagcgg tgcaagtctc cagtgctgaa gaaaatgcat      1740
     ccgcattttc gatggccgac gtgcgtacag tcagccggtt atcgctccct atccaatcgg      1800
     tcgatgtgaa cgagttgaag cggaaatata agcatttgga ggcgattcca gctgcctcgt      1860
     atgaggctgt ttctcctcgt ttactaatcg gtatcgacca ttacagattg accagacctt      1920
     tgaaaactat agaaggacag ccaggacaac ctacagctac gaagacgcgt ttgggatggc      1980
     tcatttttgg caaatgcacg gataacgcta acgacacatc cattgtgcag ccggagtcta      2040
     gctaccacgt atgcgattgc caaggagaga cctcacgggc agatcgtatg atggcagcgt      2100
     acttcgaagt ggaaggttat ggtcctgcga aggagccttt gttgtcgaag gaggatcaac      2160
     gtgcgatgtc gattctgcaa aacaacacaa aacacgtcga cgggcggtac accacgggct      2220
     tactctggcg gagcgacaac gttttcatgc cggaaaaccg tcaaatggct ctatctagga      2280
     tggagtgtct ggagcgtaag atgagccgag atacgagcct tgcggagaaa attaacgcga      2340
     tactagagga ctacttggaa aagggctatg ccagaccgat aagagcggat gagctgaaaa      2400
     ccttctaccc taggaaatgg tatcttccag tgttcccagt gacaaatcct cacaagccta      2460
     ataaagttag gttagtatgg gatgcggcag ctgaagttag aggtatctcg ctgaacaaga      2520
     agctgctgac tggccctgac ctgttgacgc cgctgcaagc cgtgctattc cgtttccgtg      2580
     aatatcgagt cgcggtggca gctgacatcc gggaaatgta ccaccaggta cgcatttgcg      2640
     atgatgacgt ccacagtcaa cggttcctat ggagatgggg aaacacaaat gcagagccgc      2700
     aggagtttgt catgctgagg atgaccttcg gtgcagcatg ttctccaagt acggcgcaat      2760
     tcgtaaagaa cgagaatgca gagaaatatc gttccctgta cccgcgtgca gttcgctgta      2820
     tccatgaaga acattacgtg gatgacatgc ttacaagtgt ggaaacggaa ccagaagcga      2880
     ttgagctggc gtatcaggtg agcttaatac acaataatgc tggattttct ctccacaatt      2940
     ggctctcaaa tagcatcaga gtcgtgacag cggtaaaagg cactgagtca accctcaagg      3000
     aaatggattt cgaaccgtgt ctaaagccag agaaggtgct gggaatgtgg tgggacacca      3060
     caacagatag tttcggcttt aaactatccc gtgtaagaca cctggagctg gcacgcaagg      3120
     acaaaccacc gtccaagagg cagatgctgc ggactttgat gtcgatctac gacccgttag      3180
     gtttgatcgc aggcgtgctt ttttatttga aagtacttct tcaggaagtc tggcgcctac      3240
     accttggctg ggatgacgaa gttccggaag agatccagca taaatgggac gcctggatgg      3300
     aacgactgcc agaattggaa agtttcatca taccacgttg ctaccgacag ctggcgtcgc      3360
     tcaccgaatc atctctacag ctacacgtgt tcgttgatgc gggtgcagat ggttacgcag      3420
     cggtcgcgta cttccgtttt gagtgccatg gacgtatcga ggtgtcgtta gttggatcca      3480
     aagctaaagt ggcgcctcta aagtatcttt ccgtgccccg cttagagctg caggctgctg      3540
     tgatgggttg cagaatagcc tcgtctataa ctagtgctca tcgagaaact attagtggaa      3600
     gctacttctg gacagactcg actgatgtta tagactggat aaacgcagac caccgtaagt      3660
     actcgatttt cgtcgcacat agggttgctg aggtgctgga cacgacgaac gtcgacgatt      3720
     ggcgatggct tccaactaaa cttaatgtgg cggacgaagc gaccaaatgg accaacctgc      3780
     agcatcatct cgcctccgaa cgatggttta gtgggcccga gttcctgcaa ctacccgaag      3840
     cagaatggaa catacctcgt cgagtaccat cggaaacgtc cgaggaggtg cggaaaaagg      3900
     ataggctgaa gctggtcggc atccacatag cgcgtccgat tttcatcgac tacgagagat      3960
     tttcccgatg gacgcggctg gtcaggacga tggcttacgt gtgtcggtat gtaaacatta      4020
     ttaccaaaac taaatctcca tcgacaggtc cgcttaaccg cgacgaaatc cagcgggctg      4080
     aaacggtaat tctgcgagac gttcagagga acgcttttac cgatgaatat gccatactct      4140
     ggaaggcgag ggaaaactca acaacaccgt cgtggaaaag tccgattccc agaagtagtt      4200
     tgttgttcaa acgaagcccc tatatggacg aggacggctt gctgagattg agcggaagga      4260
     tcgatcgttg ccgttacgtc gaccccggga ggaagcgacc tattctgcta ccgagacgac      4320
     atcgtgtttc cgagttaatc gttgacgatg tccaccgtcg ttataagcac ggcagccaag      4380
     aaactgtagt gaacgaagtg agacaacgct ttgatatacc ggctctccga tctgtgtgta      4440
     gacacgtacg cctgcaatgc cgaacatgca cattgttata cgcaaagcca gcgtccccgg      4500
     aaatgtgcga attacctgct gctcgtcttg ctgcattctc caggcccttt tcatatacgg      4560
     gcattgatta tttcggtccg atggtaatcg tgaacggccg aaagacggaa aaacggtggg      4620
     gtgttttgtt cacgtgcttg acggttcgag ccgtccacat cgagcttgtg caatccctgt      4680
     ctacgagtga ctgcttgatg gcagttcgga gcttcatggc acgccgcgga acaccaatcg      4740
     aaatagtctc cgatcgtgga acgaatttcg tgggcgccga tcgtgaatta aaggaagctg      4800
     cggaacgtgt tgattcggcg attttaaatg aattcggatc gcccgatccg gtgtggaagt      4860
     ttaacccccc cgcagcccca cactttggag gatcatggga aaggatgatc caatcggtca      4920
     agagaatgct gtcgcgcacc ctcacggaga ggcatcctac ggaagcggtc ctgtcggcag      4980
     cattgatcga agtcgagaac atgctcaatt ctcggccact tacacacgtt ccagtcgacg      5040
     gtgaggatga ggaaccgtta actcccaacc attttttgtt aggttcttcc gcaggaatga      5100
     agcccttggt gaagcctgat gattcgccag caggcttgaa acaaaactgg agagctgtac      5160
     aggctaaaat gaacgagctc tggaagaagt ggatcaaaac ctacctcccc accctggtta      5220
     gaaggacgaa atggttcgag tcgtgcaagc ctatcgagac cggagatgtt gtcttaatcg      5280
     tggacgaaaa cagcccgcga aactgttggc cgagaggaag ggtggaacgc gtagtcccat      5340
     ccaaagacgg agtcattcgt cgggtcgtca tcaaaacagc gaaaggaacg atgctggaga      5400
     ggccagtggt gaagctggta tcgctgaacg tcgcgccgag ggttatcgtt tgacgacgtc      5460
     gaaacgcctg gtggac                                                      5476
//
ID   BEL3-I_AP   repbase;    DNA;    INV; 6922 BP.
XX
AC   Contig25132;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3AP; BEL3-I_AP;
KW   BEL3-LTR_AP.
XX
NM   BEL3-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6922
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 433-433 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [5374-5967] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           2353..6183
FT                 /product="BEL3-I_AP_1p"
FT                 /translation="MSYKCKSSCSVCKRRHHGLLHKDPSTSDPSSKVPKVA
FT                 MFAKHQNQLPSVVLATALLHVQDVAGSPQTVRALIDGGSQISAISANCCQR
FT                 LGLRAAKWTLPVTGLSELPVPSVLGIVDLHIQPRDSSQSSMPVRAWVLSSI
FT                 TSDMPTSKLPSTVREKCGDLSLADPLFDIPAPVEILLGADIYPMVWSHETV
FT                 SLGHGYPTAFNSIFGWAIVGPLQHIKAPSPRALPVQISSSVESLMEKFWNV
FT                 EEPEAAPPVFTQEGQCEEIFLSEMCKNGKGQYMVPLPFRDGQPSSFPGMRQ
FT                 IAVNRLLQLERKLSRDPVLYNNYRRFMVEYESLGHMSEADSPGDYYIPHHA
FT                 VYKAEGENMKLRVVFDASARCRSGSSLNEGLHVGPKLQQDIVDVLTGFRVH
FT                 TVAFTTDICKMYRQIWVLEKYRGYQHILWRSSPQLQIRENTLNTVTYGVNS
FT                 APYLALRVLRHIADNDCEEVPEVSKALKFQTYMDDICVGAPSLECALSLKS
FT                 DLIKTLSRSGLMLKKWSSNEPRLLSGLPLEDLAGDPLTFDRGDGIPVLGMQ
FT                 WRPTADHFVYDITAIKSVLSKRGVLSVIARIFDPLGFLSPVIFHAKCIMQR
FT                 LWSAQTSWDEPLPPAIAKEWQQFLDMLGWLTEIRIPRCIGGSIGIEYSLCG
FT                 FCDASERGYAAVLYLRVTDPSQKVNVYLLGAKTKLTSLKPTTIPRLELCGA
FT                 VLLASWLSRMHRILEAHMKISGVYAWSDSTIVLSWLLNPHVALKVFVSNRV
FT                 HHIKTLLPVCKWAHVRSEENPADCASRGLSPAELVKAQLYWSGPEFLRSPV
FT                 DHWDLHPTTMPGDQLPEVHSVALLITTSIRKGEWFTRLSSYSIMIRVIARL
FT                 RRFIGRCRRQETVSGNLTRSELDQALYVLVKCTQGCLLSSLLRELSSGSAV
FT                 SSKVYAKLSPFIDEFGVIRVGGRLQNAMCSWDRKHPILLPKESHLSALIAR
FT                 HWHLSACHARSNLLMSLVNSRFWIMGVRRVVYKAIKSCITCVKLDGVNPQP
FT                 KMADLPVSRVQACRAFTAVGIDYAGPLMMKETKLRKAREYKVYIALFVCMS
FT                 TRAIHLEVVLDLSTDAFLAALDRFVVRRGVPTSIHSDCGTNFVGAARKLRE
FT                 LINSPSSRDQCSSRLMCHWNFNPPSAPHFGGLWEAAVKSTKSLLTRSLGAQ
FT                 TWTLEEFTTILCRVEAALNSRPLTPVTSDPEDLDCLTPGHFLIGQPLMSVP
FT                 EEELSVKPVNIQRRWKLLQQTFQTFWRRWSSEYLNTLQARIRWSSSQENVK
FT                 VGDMVVIKDNTAPPLL"
XX
SQ   Sequence 6922 BP; 1817 A; 1411 C; 1574 G; 2120 T; 0 other;
     gagggccgtt gctgtgtagt cggcgacgct ccgtaatata gattttatat tatagacata        60
     tgttatcaga ctacttattt tagaaataat attgttgtgt tcacctggga accgtcttga       120
     ggaggtgagg ctgccggcgt taactgtcat aagtgcgcac gtggccaaca ttttggtagc       180
     agagcgtggt tcattaagga tcttctcttc tggctgttac ttggtgagct tacttctgtt       240
     ttattagatt aaggtgtcat tccctcccat tatagtgtta agattatgac tgtcggtggg       300
     taacagtatt atttagttgc agcagtccgt tgatccacgg atgtggcatc taataactat       360
     taggcacctt tcaatattaa gtggttacat ttgattgaac aatatataag actgatcagt       420
     ttaaatacct cagttctctt agtttagtag gttttctctt aacgttaata attaggatgt       480
     catcaatacc tattatgtta gtgttattga tttaatattt tttatttttt gtttggatca       540
     catattttat tgttgaccta gcaaagttat tatattttgt taaatttaaa caggttaaaa       600
     cttccctgtt attactactg atattattac tacttagtac tactgtaggt agctaccata       660
     ctattttatt atttattagt agtaatttgt tatgtttgtg tgaacttcac tggatctctg       720
     ctctatttgt tgattattat tattttataa tctagtattc tactgcaatt gttggtagaa       780
     tttgttagta ttctttaaat ttttgttgat taagtactga tcagtattga caatataata       840
     tatttattta agtgggtttg gatatatgtg gttgctgata tatgtgcaat cacattgaat       900
     tgttatttcc aaacaccagt tgtattagtg cttaagtgtt aaattaattt gtgctgcttc       960
     ttgctcattg ggtcgttgcg ttagttcctt ttaggtgtgt gcagttgtta tctttgccac      1020
     catgtcagat gaagagatca agactcgcaa cacaagactg aaacagcgtg ccacagctaa      1080
     gcgagacctc gctgcaagtc atattcgtcg tctacatgct tcagcaaagg cagcaggaga      1140
     tgatccaaca gcaaggggtc taattatgac ggctggtcag gacctgaata attggtggtc      1200
     gcaatattca gtggaaagtg atgcgttatt gaacgttatg gttgagttgg atgaaataga      1260
     tcaattttct ccggatgctg atgctgatgt ctacgccatg gtggtagaga tcaaatcaat      1320
     catcaacaat tatgaacagg aaaccttgaa gtcatccaaa gacgctagac cagttataca      1380
     gatcagtgat actgcaataa tggcgaatcc aagtgaagat catcagtcga ttacacaaac      1440
     tagcaacgca gccatacttc caaatacagc ttccgtaatg gaaacacagt cgtcagctcg      1500
     tgtgagtagt tctccgtcgt cagatgtctc cttccgtcct caagtatcaa tgcgcctccc      1560
     aaaaatccct ctgccaaaat tcgatggtga tctccgttag tggccagatt tccgggaccg      1620
     cttcgttaat ctagtaatcc gcaacaagga tattgattca gatagcacca gattttacta      1680
     tttacttggg tgccttgaag ctgatgcggg ggaagtacta aaagggattc cagtatctaa      1740
     agacaccttt cagttagcct ggaacacatt agtgaaatcc tacgataaac cgagaaaact      1800
     ggcctcctca attattgaga gttttttagt tgctcccgta tccacttcag aatcactggt      1860
     agatctcaaa cgttttttga gtgtatttga tgaaggacta gcaatattag aatcgttgca      1920
     cttaccagac ctgtgttcgt tcctgctgtt tatcatcgct tcaaaatctc ttccaactca      1980
     tacgcgtcgc ttgtttgaat ctgataattc agcagagtat ccatcagttg acagtgtgct      2040
     ggaatttgtg aagaataggg tgagggtcct ggaaaatgct ggtggtactt caggaccagg      2100
     gaaatcattt ggtggaagca acaagaaacc taatccaggt ccagggaagc attacaatcg      2160
     tccttccact acccaaacag cgttggtgtc atttgtaaag actcagaaac ctaagtccac      2220
     tgattccgaa aagtgtcgtt gctgtggggg agctcatgca ttgaaagatt gtgcaaaatt      2280
     tctgggagca tctgtagatg atcgatacca tgatctcaca gactatgttt ggtatgcttt      2340
     gaaagtggcc atatgtcata taaatgcaaa tcgtcctgta gtgtgtgcaa acgtcgccat      2400
     catgggctat tgcacaagga cccttctact tctgatccgt cgtccaaggt tcctaaagtg      2460
     gccatgtttg ccaagcatca aaatcaactt ccatcggtag tactagcgac agcactgctt      2520
     catgttcaag atgtggctgg aagtccacag acggttcggg ccttaattga tggtggctca      2580
     cagatcagtg ccatatctgc aaattgttgt caacgtctag gtctacgtgc agcgaaatgg      2640
     acgttaccag ttactgggtt atcagagtta cctgtaccaa gcgttttggg tatcgtagat      2700
     ctacatatcc agcctcggga ttcaagccaa tcttcaatgc ctgtaagagc ttgggtacta      2760
     tcttccataa catctgatat gcctacttcc aaactaccgt caacggttcg ggaaaaatgt      2820
     ggtgacttgt cattagctga tccgctattt gatatcccgg ctccagttga aattttgttg      2880
     ggggcggaca tataccctat ggtctggtct catgaaactg tctcgttagg tcatggatat      2940
     ccaactgcgt tcaactccat cttcggttgg gcaattgtag gtccacttca acacataaag      3000
     gctccaagtc ctagggctct acctgttcag atatcttcct cagtcgaatc cttaatggaa      3060
     aagttttgga acgttgagga accggaagct gctccgcccg tgttcactca ggagggtcag      3120
     tgtgaagaaa tctttctgtc agagatgtgc aagaatggta aaggacagta catggtccca      3180
     ttgccgtttc gtgatggtca gcccagttct tttcctggaa tgcgacaaat tgcagttaat      3240
     cgtctgttac aactggagcg caaactatcc cgagaccctg tgctgtacaa taactacaga      3300
     aggttcatgg tggaatatga gtcgttaggg cacatgtctg aggcagattc tccaggagac      3360
     tactacatcc cgcaccatgc tgtttacaag gccgaagggg aaaacatgaa attaagggtg      3420
     gttttcgacg cctctgctcg ttgtcgatcc ggttcctcac tgaatgaggg cctccatgtt      3480
     ggcccaaagt tacaacaaga tatagttgat gtcttaactg gctttagagt ccataccgtt      3540
     gcgttcacca cagacatctg caaaatgtac cgacagattt gggtactgga aaaataccgc      3600
     ggataccagc atatactctg gagaagttct ccacagctcc agatccggga gaacacgttg      3660
     aacacggtta catatggagt aaacagcgct ccttatttag cgcttcgggt ccttcgtcat      3720
     attgctgata atgattgtga agaggtccct gaagttagca aggcgctcaa attccagaca      3780
     tacatggacg acatctgtgt tggggcacca tcgttggaat gtgctttatc attgaaatct      3840
     gatttaatta aaacattgtc cagatcggga ttaatgttga agaaatggtc tagcaacgaa      3900
     ccacggttgt tatcaggcct tccgctggaa gacttagcag gcgatcccct cacatttgac      3960
     cgtggtgacg gcattcctgt gctaggtatg caatggcgtc caaccgctga tcatttcgtg      4020
     tacgacataa ccgcaatcaa gtcagttttg tccaaacgtg gggtcctatc agtaattgcg      4080
     aggatcttcg acccgttagg gtttctatcg ccagttattt tccatgccaa gtgtattatg      4140
     caacgtttat ggtcggctca aacttcatgg gatgagccac ttccgccagc catcgctaag      4200
     gaatggcaac aattcttgga catgctaggt tggctgacag agatccgcat tccacgttgc      4260
     attggcggtt ccatcgggat agaatattca ttgtgcggtt tttgcgatgc ctctgaaagg      4320
     ggttatgctg cagtattgta ccttcgtgtg actgatccgt ctcagaaggt aaacgtgtac      4380
     ttgctcgggg caaaaactaa actgacatcg ttaaaaccga ccacgatacc cagattggag      4440
     ttatgtggag ctgttttgtt ggcttcttgg ttatcacgga tgcatcggat actcgaagca      4500
     cacatgaaga tttcaggtgt ttatgcttgg tcggattcga ccatagtcct gtcttggttg      4560
     ttgaaccccc atgttgcctt gaaggtcttc gtctccaatc gcgtccatca catcaagacc      4620
     ttgcttccag tctgcaagtg ggctcatgtc aggtctgaag aaaacccggc tgattgtgca      4680
     tcacggggac tgtctccggc agagctagta aaagctcagt tgtactggtc gggtccagag      4740
     tttttaagat ctccagttga tcattgggat ctccatccaa ccaccatgcc aggcgaccag      4800
     ctaccggaag tccactcagt agcccttttg ataacgacat caataaggaa aggcgaatgg      4860
     tttacgcggt tatcatccta cagcatcatg atccgtgtga tagctaggct acgtcgtttc      4920
     attggaagat gtaggcggca ggaaacagtt tctggtaatt tgacacgttc agagttagat      4980
     caagctttgt acgtgttagt caaatgtacc cagggatgcc tgttgagttc acttcttcgg      5040
     gaattgtcaa gtggtagcgc ggtttcttcg aaggtgtatg ctaaacttag cccttttatc      5100
     gatgaatttg gtgttattcg agttggtggt cggctgcaga atgctatgtg ctcatgggat      5160
     cgcaaacacc caatactgtt acctaaagaa tcgcacctat ctgcgttgat tgcacgtcat      5220
     tggcatttga gtgcatgtca cgcccgatca aacctactta tgtcgttagt caatagtcgc      5280
     ttctggatca tgggcgtacg ccgagttgtc tataaggcta tcaagtcctg cattacttgt      5340
     gttaaactag atggagtgaa tcctcaacca aaaatggctg atctgcctgt gtcaagagtg      5400
     caagcttgcc gagcattcac agcagtggga attgactacg cgggaccatt aatgatgaag      5460
     gaaacaaagt tacgaaaagc tcgcgaatac aaagtttaca tagcactgtt tgtttgtatg      5520
     agtactagag ctattcatct tgaagttgta ctggatttgt caactgatgc ctttttagcg      5580
     gcacttgaca gatttgttgt ccggcgaggt gtgcctacat ccatccattc agattgtgga      5640
     acaaattttg ttggggctgc gcgcaaattg agggagttga tcaactcgcc ctcgagtagg      5700
     gatcaatgtt ccagtcgtct gatgtgtcac tggaacttta acccacctag tgcacctcac      5760
     tttggaggac tttgggaggc tgcggtgaag tctaccaaat cgttgctgac aaggtcattg      5820
     ggggcgcaga cttggacatt ggaagagttt actacaatcc tatgtcgggt tgaagctgcg      5880
     ctgaactcca ggccattaac tcctgttact tcagatccgg aggacttaga ctgtttgact      5940
     ccaggccatt ttttaattgg ccaaccattg atgtcagttc ctgaggagga actcagtgtg      6000
     aagccagtga atatacaacg gcgttggaag ctccttcaac aaacttttca aaccttttgg      6060
     cgaagatggt cgtcagaata cttgaacact ttgcaagcta ggattcgctg gtcgtcaagc      6120
     caagaaaatg tgaaagtagg agacatggtg gtcataaaag ataacactgc acccccacta      6180
     ctctaacgtt tgggtcgtat cctcgaggtg ttgcctagta aggatggggt ggtaagagtc      6240
     gctcgggtgc taacgaaagg tggttccttg gtcagacctg tagtgaaatt agtactgcta      6300
     ccgaccgatc agtcataata gtatttgttc tttattccct ttctcttgac accttaatac      6360
     taatttgatg ggtggtgtgc ttgctgggaa cagttgatga gctgtatcca ttaaaaaaaa      6420
     aaaaaaaaaa aaaaagtagt gtagagaaat aattgttttg ggccaaaccc cctcagactc      6480
     attcttaatt ttttttttta tatgatgtta taatttagta caactgttga tccacagttg      6540
     tttattgttt ttgttttttc acttgttcct aatcatttat tttagacagc tgttgatcca      6600
     cagctgcctg ttttgtttta ataatattat aatgtaatcc tctgtgatat agctataaaa      6660
     tttcgtaagc tgtgataaat tgtaatgtga taaacctgtg attctacagt taccataata      6720
     tgtataccga tctcttgtat aataattttg ttgttgatgt aacccctctg taccactccg      6780
     agtaagcgtg aagagtcaac atgtcaatca atcaattgtg tgcctgatcg ggtccatcat      6840
     ctgtatcatc taacgaagag ctgaaacttt taactgctca aactctttgt aatcccagat      6900
     ctgggatttc caagggggag ta                                               6922
//
ID   BEL3-I_Dpse repbase;    DNA;    INV; 5868 BP.
XX
AC   Unknown_group_180;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   16-JUN-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3_Dpse;
KW   BEL3-LTR_Dpse; BEL3-I_Dpse.
XX
NM   BEL3-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5868
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1016-1016 (2009).
XX
DR   [1] (Consensus)
XX
CC   Positions [4929-5510] - Integrase core
CC   LTRs are 95% similar to each other. The original virus is a
CC   duplicate or fusion of highly similar viruses. The duplicate copy
CC   is eliminated in RU.
XX
FH   Key           Location/Qualifiers
FT   CDS           708..3731
FT                 /product="BEL3-I_Dpse_1p"
FT                 /translation="MAPRKGKDAEVLTSRTALMNSFVRNKVYIEKNSDSMM
FT                 AAELEARLSLIETNFNQFCNIQAKIEHDSEDASEYESRYEAEEVYCELKAK
FT                 LLSCLGHRGRRQSNVGDLLNSTQVSRSSRLPKLKLPEFAGKFTEWPSWYNT
FT                 FATLIESDSELDELSKFIHLRSALGAGPLSAIEGLELTGPNYRKALRLLKD
FT                 RYENKAIILQLHVQELFNLRRLKRPDSEGLRVLVDNVNAQLVALKSLSDDK
FT                 EILDAVIFHLIRTKLDEDTMDRWEVEWDCKKLPSWSLLSQFLINRGVNMAN
FT                 REVRRGNGARPSGKGEMKNATLAATIGSNGCYVCPGTHGLKGCQRFNELSP
FT                 VQRYHEAKKHSLGLICFSKRHTTRNCNGPRCRICSKPHHELLHREIPIVAK
FT                 EPGLKGQKLQEPKSLHSSLLSRSSTNFLATAVVQIKAIDGGYRNCRCVLDS
FT                 GSQLNFLTARIVSALGLEMRDSVIQLSGIGNATSQVMGEVQATFKSRVTRY
FT                 MATEDFCVLKEITQYNPTSSGICSEWVPPKGVTLADPTFQSGEDIDMLVGV
FT                 TLFFKLIVAGQIKLGAHLPRLQKSLLGWVVVGEFTKSSEVALLATDIARKG
FT                 SKNDQLQELVQRFWKCEEVPETVDKFTEEEKQCEDCFVTHVKQEASGHLVV
FT                 ALPFKNPKVELGETYQIALTRFLNLEKRLNRSQALKEQYVQFIEEYRQLGH
FT                 LTAIEPAGQEKVEYFMPHHPVIRPESLTTKLRVVFDASCRSSNGRPLNEAN
FT                 LVGPTLQPDLFETLTRFRFYRYALTADIKKMYRQILVAEPHRNYQCILWRC
FT                 NVSDPIQVLRLNTVTYGTNSAPFLAVRCLYYLVDRYAEKFPLAREAVKRSF
FT                 YMDDMLCGAESKEELTKLKEQVTELLGLGKFELHKWRSNYQGMDNNTSVEP
FT                 LMLKTEDAAKTLGIYWSSLEDKFQFCFNIKVSAIATKRSVLSELAQVFDPL
FT                 GFLSPLLILGKIFVQELWLLKQDWDEELPASYATQWLRYREELKLIDKISI
FT                 P*"
FT   CDS           4473..5297
FT                 /product="BEL3-I_Dpse_2p"
FT                 /translation="MEGGLRYIVYNVQQLSLHEEFIKLKEGKVIKSARIQS
FT                 LSTFLQEEEGIAIIRVGGKLSNAELPFDTRHPILMPSNHKVVEALVELTHR
FT                 KNLHAGAQSLCAFLRQRYWVINCRKLARRVIRGCIPCFRRRPLAATQLMGA
FT                 LPANRVRGNIYPFERAGLDFAGPIWMHFHMRGKRPVKVYLCIFVCFATKAC
FT                 HIEIVSDLSSNAFIAALKRFFARRGLSSDLYCDNATNFVGHESSTELSTRQ
FT                 VRSSLTTNAASEESGFTSSPHAPLTLEDYGRAP*"
XX
SQ   Sequence 5868 BP; 1684 A; 1198 C; 1487 G; 1499 T; 0 other;
     tttggcgccc gagcagggac ctttggagaa ggttcaatta ccggatggag ttcacgactg        60
     gaactcaata aatatttcac cctgagtctg gctgacggcg agtgcgacag cggcttcggt       120
     atcgcattgt gagtgtgaac tgctttgagc atctaatatt tcttgcaggc atatttagtt       180
     ccaattcgat gtgtgtgaat aatcttaaaa caatacaatt gtgttagtgt caagtggtcg       240
     cggctttgag acttctgcgc tttaattgtt ctgtaagcgg ggtctcgtgt agaaagcaga       300
     ttacaattac agttagcttg agcgcatagg tatctgcata cacacataca gcctattgcg       360
     tgcactgctg tacgttgaag caaggcacat acatacttgc atatatatgc agttacaagc       420
     cggcacttaa agaacagtaa ttgctatttg acattgattt aactttgtag tcgtttcttc       480
     tttgcctgcc ggttcgttgg ggcgcaagta cacattttgg tacagtggcg cacagtggtt       540
     aattgttgat caattattga attgggcagt gtagtgagaa tttaaagtta gccgattatt       600
     gaatagagtg gctaaacttg gtaccgggtt acttactcat gccaatattg agtatttttt       660
     tattgttaaa ttgtcacggg taaaaccggt gtaaatagtc agtgcaaatg gcacctagaa       720
     agggtaaaga tgcggaggtg ctcacttctc gaacggcgtt aatgaattcc tttgtccgta       780
     acaaggtcta tatcgaaaaa aatagcgact ccatgatggc tgcggagctg gaagccaggt       840
     taagtctaat tgagacaaac tttaatcagt tctgcaacat tcaggctaaa attgaacacg       900
     atagcgagga cgccagcgaa tatgaaagcc gctatgaagc tgaggaggtt tattgcgaat       960
     taaaggccaa gttactaagc tgtctcggac ataggggacg gcggcagtcc aatgtaggtg      1020
     atcttctaaa tagcacacag gtgtctcgtt catcgagact tcccaagcta aagctgcctg      1080
     agttcgctgg aaagtttacg gaatggccca gctggtacaa cacctttgct actctaatag      1140
     aatcagactc tgaattggat gagttgtcta aatttattca tttgagatca gcgttaggag      1200
     ctggaccgtt aagtgcgatt gagggtttgg aattaacagg gcctaattat cgcaaggcac      1260
     tacgattatt gaaagatcgc tatgaaaata aggcaattat tctgcaatta catgtacagg      1320
     agctattcaa cttaaggcgg ctaaagagac ccgactcaga gggactgaga gtgctggtag      1380
     acaatgtaaa tgcccaatta gtagcactca agtcgttaag cgacgataag gagattctgg      1440
     atgcagtaat tttccatctg attcgcacaa agcttgatga agatacaatg gataggtggg      1500
     aagttgagtg ggattgcaaa aagttaccgt cgtggtcatt gttatcgcag tttctgataa      1560
     acagaggagt caatatggca aatagggaag ttcggcgagg caatggagcc cgacccagtg      1620
     gtaaaggtga gatgaaaaat gcgaccttag ctgcaacaat aggcagcaat ggctgctacg      1680
     tttgtcctgg gacccatgga ttgaaagggt gtcaaaggtt taacgaacta tcaccagtac      1740
     aacgttacca tgaggcgaag aagcattcgc tgggcctgat ttgttttagc aagcgacata      1800
     caactagaaa ctgtaatggt ccgcgttgta ggatttgcag caagccgcat catgaacttc      1860
     tgcatcgaga gatacctatt gttgccaagg agccggggct caaagggcag aagttgcaag      1920
     agccaaagtc actgcatagc tccctattgt ctagatcatc caccaacttt cttgcgaccg      1980
     ctgtagttca aatcaaagct atagacggag gatatcgcaa ttgcaggtgc gtgttagatt      2040
     ccggtagtca attaaatttt ctgacggcta ggatagtctc ggccctgggc ctagaaatgc      2100
     gcgactcagt catacaactc agtggtattg gaaatgcaac atctcaagtt atgggagagg      2160
     tgcaagcgac ttttaaatct agagtcacca gatatatggc taccgaggac ttctgtgtgc      2220
     tgaaggaaat aactcagtat aacccaacaa gctcaggaat ttgttcggag tgggttccac      2280
     ccaagggagt tacgctggcc gaccctacat ttcagtccgg ggaagatatt gacatgctag      2340
     ttggagtcac attgtttttc aagctaattg tagcagggca aattaaacta ggagcacacc      2400
     ttccaaggct tcaaaagtct ctgttaggct gggtcgtcgt aggtgaattc acgaaatctt      2460
     ctgaagttgc actgttagca actgacattg cacgaaaggg gtcgaaaaat gatcagctgc      2520
     aagagctcgt acaaaggttt tggaagtgtg aagaagtccc tgaaacagta gataagttca      2580
     ctgaggaaga aaaacagtgc gaagattgtt ttgtgacgca tgttaagcaa gaggcctcag      2640
     gacatttagt ggtagctctg ccctttaaga atcctaaagt tgagttaggc gaaacttatc      2700
     aaatcgcact taccaggttc ttgaatttag agaagaggtt aaatcgtagc caagcgctga      2760
     aggaacaata tgttcaattt attgaagaat atcgccagtt agggcattta acggcaatag      2820
     agcccgccgg acaagaaaag gtcgaatact tcatgccaca tcatccggtt attcgcccag      2880
     agagtttgac gaccaagtta cgagtcgtat ttgatgcctc atgtagatct agcaacggca      2940
     ggccactgaa cgaagcaaac ttggttggtc caacgttgca gcctgatctg ttcgagactt      3000
     tgaccaggtt ccgtttctat agatacgccc ttacggccga cataaagaaa atgtaccgtc      3060
     aaatattggt tgcggaacca catagaaact atcaatgcat tctatggcga tgcaacgttt      3120
     cggatcctat ccaggtgcta cgcctaaaca cggtcactta tggaacaaat tcggcgccgt      3180
     tcctggcagt acgttgcctc tattacttgg tcgataggta cgcggaaaaa tttccgttag      3240
     ctagagaggc agtaaagcga agtttctata tggatgatat gctgtgtgga gccgaatcaa      3300
     aagaggaact gacaaagttg aaagaacaag tgaccgaatt attagggcta ggaaagttcg      3360
     agctgcacaa atggcgcagc aattatcaag gaatggacaa caacaccagc gtagagcccc      3420
     tgatgctaaa aacagaggac gcagctaaaa ctttggggat atattggtca agtctagagg      3480
     acaaattcca attttgcttt aacataaagg tctccgcaat cgccacgaag cgatcagtgc      3540
     tgtccgaatt ggctcaggtg tttgatccgt tagggttctt gagtcccttg ctgatcttgg      3600
     gcaagatctt tgttcaggaa ctttggcttc taaagcagga ttgggacgag gagttaccag      3660
     caagctacgc aactcaatgg cttcgatata gagaagaact gaaactaatt gacaaaattt      3720
     caattccgtg atcctcaatt ccaattacgg ccgacccatg cactttgcaa ctgtttggtt      3780
     tctctgatgc atccaacaga gcttacggcg gcgtaattta tgctcgtgtt agggatgaag      3840
     ggggaggaat ttcggtgcga ctggtaacgg ccaagtccaa agtagcccca gttagggtaa      3900
     catcattgcc acgcttacag ttacaagggg cattgttagt ggccaagcta atggcaaagg      3960
     tatgagcctg tcttcacata gcagtagaga aggttaacta tttcacggac tccacaattg      4020
     tgttaaattg gctgtcgtca catgctagtc gatggaccac cttcgttgcc aatagggtgg      4080
     ctcaaataca agagctcaca catgtacagg attggttcaa ggtcgacacc aaatcaaacc      4140
     ctgcagatat tgtatctagg ggattattgg taaccgaatt gagcaagtca acgatgtggt      4200
     ggaacggtcc agaattttta atggacgcag cagatgactg gaccaaattt aattggagtg      4260
     aggaaataca aacagttcca gaggagagga aatgtaagtt ctcgctgaca gttggaaagg      4320
     tagaaagtaa tgagtagtta gatgtcgtgg ggagatgcaa atttgcaaat gatttcctca      4380
     aattgcagcg agtttttagc tatatttttc gctggcgtag aatatcgttg agatcaaact      4440
     caaatgaaac aggcaacctt actgcagctg aaatggaggg cggattgcgc tatattgtgt      4500
     ataatgtgca gcagttgagc ttgcatgagg aattcattaa gcttaaagag ggaaaggtga      4560
     tcaaatcagc gagaattcag agtttaagca cgtttttaca agaagaagag ggaatagcta      4620
     ttattcgagt cggcggaaag ttgtccaatg ccgaattgcc atttgacaca aggcatccca      4680
     tcttaatgcc gagcaaccat aaagtggtag aggcgcttgt tgaactcaca catcgaaaga      4740
     atttacatgc cggggcacaa tcgctatgtg cctttttgcg acagagatat tgggtaatca      4800
     attgcaggaa acttgcccgc agggtgatcc gtggttgcat accatgcttt cgtcgtcggc      4860
     cgctcgctgc aacacagctg atgggagcgc tgccagctaa ccgagtgcga ggcaatatct      4920
     accccttcga gcgcgctgga ctggactttg ctggaccaat atggatgcac tttcacatgc      4980
     gaggaaaacg cccagtaaag gtgtatctgt gcatatttgt atgctttgca acaaaggcct      5040
     gccatataga gatcgtgtcg gacttaagct caaatgcgtt catcgcggcg ttaaaacggt      5100
     tctttgcaag acgtggattg agttctgacc tatattgcga caacgccacc aattttgtag      5160
     gtcacgagag ctcaacagag ctttcgactc gccaagtcag aagctcattg acgacgaatg      5220
     cagccagcga ggagtcaggt ttcacttcat ccccccacgc tcccctcact ttggaggatt      5280
     atgggagagc gccgtgaagg tggccaaaca gctgcttgtg aaatgcacca acagcacagc      5340
     actaaactac gaagatcttg tgactgccat cacacaagta gaagcggtga tgaattctag      5400
     acctctgcat cccttgtcat cggacccgaa tgacttcgag gcgctaactc ccggtcattt      5460
     cttggttggc cgacccctga acgcgttagt agaactagta gacgacgcac tgttgaaact      5520
     gtccatgagc aaccattgga aacgcattct aatggtacac cacatgttct ggcaccgctg      5580
     gtcggcggaa tatttgacgt tgctgcagaa gcggacaaag tggagcactg tagccaacaa      5640
     cattcaactt ggtacactgg tccttattgc ggaagacaac gctccgcccg gacaatggcc      5700
     gctgggaaga gttgcagagt tacacccagg agctgatggt gcagttcggg ttgtaacact      5760
     caggaccaag actggattat ttaagcgcaa cgtacataag ctctgcccgc tgcctacaga      5820
     tgccgatgaa cttaatgttg gaaggagctt ccaaggtggg gagaatgt                   5868
//
ID   BEL3-LTR_AG repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL3-LTR_AG is a long terminal repeat from the BEL3_AG LTR
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3-I_AG;
KW   BEL3-LTR_AG; Bel/Pao; Long terminal repeat; RETRO935_AG_I;
KW   RETRO935_AG_LTR; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-350
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO935_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 21-21 (2002).
XX
RN   [2]
RP   1-350
RA   Kapitonov V.V. and Jurka J.;
RT   "BEL3_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (19-FEB-2003).
XX
DR   [1] (Consensus)
XX
CC   5 bp target site duplication [1]. This long terminal repeat
CC   is from the BEL3_AG LTR retrotransposon [2].
XX
SQ   Sequence 350 BP; 88 A; 72 C; 93 G; 97 T; 0 other;
     tgtcacttat ggtgacgacg cgatcgttcg aggatcgaca aggagcgtcc gtattttagc        60
     tagcggccgc tagaggtctc ggactggacg ataaacgttc ggactgaacg aaagggatcg       120
     accgagcgtt tgacggatag ccggtgaccg catggactgc gaaatagggc tttctttttg       180
     atcccggacc tgcgtggaag cggacgaatt tttagttttt tcttcactct ctcggctact       240
     aaaattttgt gctgttaaag gcaaaataaa ataatcctga attacttaaa aaagccgttt       300
     gtttggtaaa ttatttatct gcaggccggg cgttgtgcta acgcgcaaca                  350
//
ID   BEL3-LTR_AP repbase;    DNA;    INV; 104 BP.
XX
AC   Contig25132;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3AP; BEL3-I_AP;
KW   BEL3-LTR_AP.
XX
NM   BEL3-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-104
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 434-434 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 104 BP; 22 A; 29 C; 26 G; 27 T; 0 other;
     tgttcgagca ccatcgacat ttgtaattgc tcactgttac gcgccactgt ggcgcatgat        60
     ggtgtcagca ctgctaacag ttggtcagac cattaggccg ccca                        104
//
ID   BEL3-LTR_Dpse repbase;    DNA;    INV; 319 BP.
XX
AC   Unknown_group_180;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3_Dpse;
KW   BEL3-I_Dpse; BEL3-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1017-1017 (2009).
XX
DR   Genome; Unknown_group_180; Positions    5990    6308.
XX
SQ   Sequence 319 BP; 119 A; 41 C; 68 G; 91 T; 0 other;
     tgacgcccct taatagaata taggattaaa ttacttaata atggttaaca atttgaagat        60
     ttgaattaat atgtaaatag tactaaaatt gtgaattaat ttgaagttgg cgcgttacat       120
     tatgtatgta cgtataaaga agcgcaatcg atagtatcaa tggtatcgag ccaaaacgat       180
     ctgaatgatg atcactagat ttaagatata tatacgaaat aaacgaacga gcaaggaact       240
     acatcgagcg gattaaggaa ggtctgaatt gtgtagacgg attccactgg aaaactgttg       300
     gagggactta gctcgtaca                                                    319
//
ID   BEL3_DM-I   repbase;    DNA;    INV; 3750 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3_DM;
KW   BEL3-LTR_DM; BEL3_DM-I.
XX
NM   BEL3_DM-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3750
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1269-1269 (2012).
XX
RN   [3]
RP   1-3750
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [2]: sequence corrected.
XX
FH   Key           Location/Qualifiers
FT   CDS           1094..3748
FT                 /product="BEL3_DM-I_1p"
FT                 /translation="MSDRSGRAQLSVPASRLIKRSASASPIPSGKPQTSST
FT                 FKRSPVVTRSSIKPASPSKMSLSDFISAADRLIKFESRIDGPGDSNATQAA
FT                 QLRAFEIRRDRVKALWDDAEQQYKVCARALSQGASSGEVEATEAKFDNCYT
FT                 VYERCTTHLGVQIDALSASSTPPAPMSAPFATSEGCRLPPVDMEVFHGDYL
FT                 RWPTFRDLFTAIYINNPCLTPVEKLFHLNSKTAGDANALVAEYPLTNDGFA
FT                 SAWVSLCDRFENKRLLVNSQLKTLLNLSKITKESGSALRELHSTMHRCVTA
FT                 IEHAQISTESWDCILVFLCTSNLPEQTRSLWEHSLKRKTEIPAWQDVSHFL
FT                 SERARALEAMEGDRSVPKVPNSIPRSANPALPERLNSFRTQVDTIGTRCDL
FT                 CSRENHPIRFCHQFLQLSIHERETYIKSKKLCLNCFAKGHQLRECTSTHNC
FT                 FTCNGRHNTLLHRDNTLRTAAASATAIAPTRTPVMSNVQTYLAANTRGVLL
FT                 GTAVINICHFGATYPARALVDSGSEATFISERLFRKIKLPFKSVHTQVSGL
FT                 NQAVTAEAHKVCNFDIGSPLKPRMRIKASALVVANLAGNIPSSPVPQLLLN
FT                 KLPKIQLADPEFYKSAEIDVLIGADILPTIIQGGYHPNICGPLIGLETVFG
FT                 WVLTGPLSQMIPGTVSSFTTQVSVSEEAKLESPPTVSSDEALPFRAPNSTT
FT                 PKVRVGFKALRPALNDILHSGPSFQPDPRPPCAVKLTSMLCPNEQVILPPT
FT                 HSIFQIKTPSSESSKPRGTNSFQCRVCPGAHGLRDCQRFLGLSGEKRMRAV
FT                 LTHKYCTNCLAHEHSGQSCRSKGRCKTCGQNHHTLLHLQGSARLSASTPKQ
FT                 AVTAPLTTLIRTARGLQLGHDVLICNPCKGGE"
XX
SQ   Sequence 3750 BP; 978 A; 980 C; 756 G; 1036 T; 0 other;
     tttggtcctt cgagccggag cttcgtccac cttcacacca gcattccatc ggccgtcgag        60
     ataagtgccc cattcttgtc tagagtggta catacatata tatatgcata aatacactgg       120
     cacctctcat ccgccttccc ttgcatatac atatatatgt actagtctag caatatttcg       180
     actacatgcc tatatgtata tattcttata tatatataga tatgtattaa gctgtgttta       240
     aatccgatta atatttatta acacgagaag aacaatatcc tttgttgatc gtttaataaa       300
     tttatttaca tatgtattct gccttttcac acatccgcac atactcatat ttataactag       360
     tcgccggctg cagagtgaca tatatacata catatatatg tacatgcgcc tcgcttaact       420
     attaaataaa tcacaatatc ctttgctatt tttaatagtt ttattttgca atttaataat       480
     taatcctcca agcataatta tttctacttg ttttatttaa ctatttgcta attgtgtgtc       540
     cgctttcttc tgtttgtacg aacatacgct catacataca tacacatcca tgtatgcaca       600
     tatgacaaca tatggcgtac aaatagccaa gcatcacaat taacatatat gtaaattcac       660
     gattgcaact tccacataca tatacacgac acatttacaa aataataaac ttaaattgtt       720
     aaattggttg ttttgttttg tgtccaagca gctgagatcg tcactagtat cgataacatt       780
     ttcaataact atcaccggcc gccacaattt ctgacgatag ttgtgtcacg atcagtattt       840
     atcgtatttc aaagagccat tgtaaagcaa aatataaagc caccctttta attattaaat       900
     ttatcctaat taaataaata ttcttcttct ttgttttcgc tttacttgct taacaaggca       960
     ataattcttt tccaatttgc tctacgttca gttgacaact ttcttgctct tgtcaactga      1020
     attactttgc tctttgagtg aatttctgtc tccatatcag aaatttccag cagctaactt      1080
     ctagttagca tccatgtctg atcgttcggg tagagcgcaa cttagtgtac cagcttcgcg      1140
     tctgatcaag cgcagtgcct ctgcatcacc cattccgtcc gggaaaccgc agacaagcag      1200
     cactttcaag cgtagtccgg tcgtcacccg atccagtata aagcccgcca gtccgtctaa      1260
     aatgtcgttg tctgacttca tctcggctgc ggataggctc atcaagtttg agtcgcgcat      1320
     tgacggtccc ggagactcta atgccaccca ggcggctcag ctccgggcct tcgagatccg      1380
     tcgagatcgg gtcaaggcat tgtgggatga tgctgagcag caatataagg tctgtgccag      1440
     agcattgagc caaggggcaa gcagtggcga agttgaagcc acggaggcca aattcgacaa      1500
     ctgctacaca gtctacgagc ggtgtacaac ccatctgggt gtacagatcg acgcactttc      1560
     cgcatcgagt acaccgcccg ctcctatgtc cgctcctttc gccacgtctg aaggctgtcg      1620
     ccttccaccc gttgacatgg aagtgttcca cggcgactac ttgcgctggc caacattccg      1680
     cgatcttttt actgcgatct acataaacaa tccgtgttta actccggtgg aaaagctatt      1740
     ccaccttaat tcaaaaacag caggcgatgc aaacgcacta gtcgcagagt atcctctcac      1800
     aaacgacggc tttgcatcgg cttgggtctc tttgtgtgat cggtttgaga ataagcggct      1860
     gttagtcaac agccagctta aaactctttt aaacctttcc aagatcacca aggagtcagg      1920
     ctcggctctc agagagttgc atagcactat gcacagatgt gtcacggcaa tcgagcatgc      1980
     tcagatatcc actgaaagtt gggattgcat tcttgtgttc ctgtgcactt caaatttgcc      2040
     ggaacaaact cgatctctct gggagcattc attgaaacga aaaacagaaa tcccagcctg      2100
     gcaggacgtc agtcacttcc ttagcgagcg cgctcgtgct cttgaagcta tggaaggtga      2160
     ccgttctgtt ccaaaagttc cgaactcaat tccgagatct gcgaaccctg cccttcccga      2220
     acgactgaac tcgttcagaa cgcaagtgga cacaatcggc acaaggtgcg atctgtgttc      2280
     aagagagaat catccaatcc gattctgcca tcagtttctc caactatcca ttcatgaacg      2340
     agaaacatac ataaaatcga agaagctttg tctaaactgt ttcgctaaag gtcaccagtt      2400
     acgagagtgt accagtactc acaactgttt cacgtgcaat ggtcgacata acaccctact      2460
     ccatagggac aatactcttc ggaccgctgc tgcctccgca acagctatag ctccgactcg      2520
     tactccagtt atgtccaacg tccaaacgta tctggctgcc aacacacgag gtgtcctcct      2580
     cggcacggcg gtgattaata tatgccattt cggcgcaact tatcccgccc gtgctttagt      2640
     cgactcaggg tccgaagcga ctttcatttc tgagcgactg ttccgaaaaa tcaagttgcc      2700
     attcaagtcc gtgcatactc aggtctccgg cctgaatcaa gcagtgacag ctgaggcaca      2760
     caaggtatgc aactttgata ttggctctcc gttgaagccg agaatgcgaa tcaaggcttc      2820
     tgctctcgtc gttgcaaatc tggctggtaa catcccttcg tccccagttc cgcaactctt      2880
     gttaaacaaa cttccgaaaa ttcagctagc tgaccccgag ttctacaaga gtgcggaaat      2940
     tgatgtcctg ataggcgcgg atatccttcc gactatcatt cagggaggtt atcaccctaa      3000
     tatttgtggg cctcttatag gtctggagac tgttttcggt tgggtactga caggcccact      3060
     gtcacagatg ataccaggaa cggtctcctc cttcacaact caggtttccg tttcggaaga      3120
     ggcgaaactt gagtctccgc caaccgtatc atctgacgaa gctcttccat tccgagctcc      3180
     aaacagcacc actccgaaag tgagggtcgg tttcaaggct cttcgtccag cactgaatga      3240
     tattcttcat tcaggcccat catttcaacc cgatcctcgt cctccttgtg ctgtcaaact      3300
     aacctccatg ttgtgtccta acgagcaagt aattctacct ccaactcatt cgatcttcca      3360
     gataaagacg ccgtcatcag aaagcagcaa gccacgcggt accaattcct tccagtgccg      3420
     cgtgtgccca ggagcccacg gtctccggga ttgccagcgt tttctgggcc tttcagggga      3480
     gaagcggatg cgtgcggtac ttacacataa gtactgtacg aactgcttgg ctcacgagca      3540
     ctccgggcaa tcctgccgaa gcaagggacg ttgcaaaacg tgtggccaga atcaccacac      3600
     gctcctgcat ctccagggat cagcacgtct ctccgcctcg actcctaaac aggcggtcac      3660
     agctccgctg acgaccttga tccgcacagc aagaggtctc cagcttggac acgacgtctt      3720
     aatttgcaat ccttgcaagg ggggggagta                                       3750
//
ID   BEL3_DM-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL3_DM;
KW   BEL3_DM-I; BEL3_DM-LTR.
XX
NM   BEL3_DM-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-297
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1270-1270 (2012).
XX
RN   [3]
RP   1-297
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence corrected.
XX
SQ   Sequence 297 BP; 78 A; 86 C; 49 G; 84 T; 0 other;
     tgttaatgcc agatcccatt aacaagaatt gctcctcccg caccacacaa tgttatgttg        60
     ttaacagcat tctgttaata acatcaccca gttctcctac tggttcgcgg tacttagcgc       120
     ccgctgagta cttcgtctcg cgcctcactt gcctcacttg cctctcctgg tactgacgag       180
     acatatgtac atcttattac taatgctata cgagcaacac agctttaatc ttagaaataa       240
     agacgaggaa attacaaccc ggtctttttg cttatcggcg acgccaccac tccaaca          297
//
ID   BEL4-I_AG   repbase;    DNA;    INV; 5410 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL4-I_AG is an internal portion of the BEL4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL4-I_AG; BEL4-LTR_AG; BEL4_AG; Bel clade; integrase; peptidase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5410
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL4_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(4), 68-68 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL4_AG is a family of Bel/Pao-like LTR retrotransposons.
CC   BEL4-I_AG, an internal portion of BEL1_AG, is flanked by
CC   BEL4-LTR_AG
CC   LTRs. The BEL4-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 10 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1761-aa BEL4_AGp Bel-like
CC   protein
CC   (pos. 95-5377).
CC   BEL4_AGp is composed of the peptidase (pos. 158-300),
CC   reverse transcriptase (pos. 800-930), and integrase (pos.
CC   1480-1625)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..5377
FT                 /product="BEL4_AGp"
FT                 /translation="MPVDHSPVKEVVPAANNMEESQSSTVREFGSVPDVTK
FT                 LDRQRTHLEWQLDRLEQMFVKHSTDVHSLKTIADRVKVLALDYKQWYDSIL
FT                 DVVSDDQAQEAIERYGVFDDKVFELSKNIEYQLASQIPLPTTPNPFFGSEQ
FT                 KPTTVPVRARLPEIVLPHFDGNIRDWPAFRDAFQSLIHSSEQLTECDKLHY
FT                 LAASLTKDARAVIDALEITSKNYDVAWKLLSERYENKYLIVKTTVEALFNI
FT                 SPLKRECADSLSRLVDDFERNLRMLEKEGEKPDAWSTLLVFRLSSLLDPTT
FT                 LRHWELHRKSTTIPTYKDLVQFVRNHCHVLKSFSKPASGARTGDTMRSNPR
FT                 VQTIHAATSAVHSVAYNEKCKLCGVSKHSVFRCELMNNMSVADRKQLVQSK
FT                 GLCFNCLSPAHRLRQCTSSGCKICQQRHHTLLHEAAPATEASDAPSTSSTC
FT                 PPQSLTHCSIQIENSVVLLQTVLVQVEDNHGRCHLARALLDSGAQLNIVTE
FT                 RLTQRLGVAKRRENHRIGGIGEVSVTSQHSAVLKIHSLDSEYTASGKFHVL
FT                 SKLTRELPSSRINTSSWQIPRQVQLADPSFHSPGPIDLIIGAELYYDVVKE
FT                 GLIKLSHERVTLQNTAFGWVIAGRVNVHAPPPPSSIVGHVCSTSIEEQLSK
FT                 FWELESCRATSTLSVEESNCEKQFATTTTRDTDGRFIVQLPKREEKLALLG
FT                 DSKGIATRRFLALERRLSSNASLKTAYTQFIEEYAELQHMTEVAESDATTS
FT                 SPSYYLPHHCIVRPDSTTTKLRVVFDASCASDTGTSLNDALMIGPTIQDDL
FT                 MSILLRFRMSKFALVADIEKMYRQINIAAIDRPLQRILWRNSPTEPIRTFQ
FT                 LNTVTYGTSCAPYLATKTLQVLSQVGASTHPEAATILGRDFYMDDMLTGVN
FT                 SIPEGQRVCQQLIDLLASGGFCLRKWATNNRQIFEHLPQHLQDERTILNLD
FT                 AKSPIIKTLGLKWNVSTDAFVFNIPRWNADNIITKRNALSDVAKLFDPIGL
FT                 VGPVIIQAKLFLQELWRCQIAWDEPLTPALQNRWLLFREKLAMLQTIHIPR
FT                 WLLTDQRATNLQMHCFCDASEKAYGAAIYLRSTNTDGRVTTNLITAKSKVA
FT                 PLADSRKQKRVCLPRLELSAALLLAHSYEKVSDALKLQVETIFWSDSTIVL
FT                 HWLSATPSRWKTFIANRVSEIQHITHGKEWRHVPGTDNPADIISRGMDADQ
FT                 LETSTLWWHGPDWLAQPSEEWPNTHQPRQEEFTTDELEERPICMAVQSVAP
FT                 NELFSLRSTFTGLQRLVAWLRRFRHNTNPANHQQRRLDHHLSLEELAESTL
FT                 CLVRLAQAESFPEDIKHLSKGDSVGNNSPLKLLAPFLQDGLLRVGGRLRHA
FT                 PIPFDRKHPYILPANHPLTNQIATLYHRTYQHANPQLLIASMRERFWPLRA
FT                 KNLARRIVHSCYKCYRCRPTPAQQLMGDLPAERVTPTSTFLHTGVDLCGPI
FT                 HYRHTSRKAQLIKGYVAIFVCMAVKAVHIELVADLSTNAFLAALRRFIGRR
FT                 GKPAIIECDNARNFLGASREIASLSKQFNHQWQTSVIKSCIDDGIQFKFIP
FT                 PRSPNFGGLWEAAVKSFKTHFKPTVGNAILTSDELNTLLIQIEGCLNSRPL
FT                 TPLSNDPSDLEVLTPGHFLIHRPIVSLAEPSLEKLPFNRLDRWQKVQEFVR
FT                 RLWKRWSTDYLSGLQQRTKWTKQKDNVKLDTMVLLKEDGLPPSKWCLGRVT
FT                 QIIKGADDNIRVVIVKTKDGDFKRSISKICVLPTDEPSSSS"
XX
SQ   Sequence 5410 BP; 1466 A; 1514 C; 1272 G; 1158 T; 0 other;
     tttggtcctt cgaaccggat tagtgtgcga gtgatccaca gttcgcgttt agggaagttt        60
     gtgaaaagta aagtttgtgt tagaaagtga aactatgccc gttgaccatt ctcccgtcaa       120
     agaagtggtt ccagcggcca acaacatgga ggaaagccaa agttccaccg tcagagaatt       180
     tggctccgtt ccagacgtca ccaaattgga ccgtcaacgc actcacctgg agtggcagct       240
     tgaccgtcta gaacagatgt tcgtcaaaca cagcaccgac gttcactcgc tgaaaaccat       300
     agcagaccga gtgaaggtgc ttgctttgga ctacaaacaa tggtacgact cgatcttgga       360
     cgttgtgagc gacgaccagg ctcaggaggc aatcgagcga tatggcgtgt tcgacgacaa       420
     agtattcgag ttaagcaaaa acatcgaata ccagttggca tcgcagatcc cattgcctac       480
     aacaccaaac ccatttttcg gcagtgagca gaaacccacg acagtcccgg tgcgtgcaag       540
     acttcccgaa atcgtgctac cacatttcga cggaaatatt cgcgactggc ctgccttccg       600
     tgacgcgttt caatcactga tacattcgtc agaacagctg accgaatgtg acaagctgca       660
     ttaccttgct gcgtcgctga cgaaggacgc acgcgcggtg atcgacgcat tggaaattac       720
     atccaaaaac tacgacgtag cctggaagct gttgtccgag cgctacgaga acaagtacct       780
     catcgtgaaa accaccgttg aggcgttatt caacatatcg ccactgaaga gagaatgtgc       840
     agattctcta agccgactcg tcgacgactt cgagcgtaac ctacgaatgc tcgaaaaaga       900
     aggcgagaaa ccagatgcat ggagcacgct gctggtgttc aggctaagct cgctgctgga       960
     tccaacaacc ctgcgtcatt gggagcttca ccggaagtct acgaccatcc caacgtacaa      1020
     agacttagtg caattcgtcc gcaaccattg ccatgtactg aagtccttct ccaagccagc      1080
     cagcggagcc agaaccggag acaccatgcg cagcaaccct cgagtgcaaa ccatccatgc      1140
     tgcgaccagt gctgtgcata gtgttgcgta caacgaaaag tgcaaattgt gcggtgtttc      1200
     gaaacattca gtgttccggt gtgaattaat gaacaatatg agtgttgcag atagaaagca      1260
     actagtgcag tcgaaaggat tgtgcttcaa ctgcctttct ccagctcatc gtttacgaca      1320
     gtgcacatca agcggatgca agatctgcca acaacggcat catacgttgc tgcacgaagc      1380
     agcgccagca actgaggcgt cggatgctcc atccacgagt tctacctgtc ctcctcagtc      1440
     ccttacccac tgttccatcc agatcgaaaa cagtgttgtg ttgctgcaaa ccgtgctggt      1500
     ccaggtagag gacaatcacg gacgatgtca tctagcacgt gccttgctgg attccggagc      1560
     acaactcaac atcgttaccg agcgccttac tcaacggctg ggtgtggcga aacggcgaga      1620
     gaatcatcgc atcggaggaa tcggagaagt ttccgtgacg tcacaacatt cggctgtgtt      1680
     aaagatccat tctttagaca gcgaatacac agcgtccgga aagttccacg tactcagcaa      1740
     gctcactcgt gagctcccat caagccgtat caacacaagc agctggcaga tacctcgtca      1800
     agttcagctg gccgatcctt cgtttcacag tcctggcccg atcgacctca tcatcggagc      1860
     agagctgtac tacgacgtcg ttaaggaagg actcatcaag ctatcccacg aaagagtgac      1920
     actccaaaac actgcttttg gttgggtgat agcaggcaga gttaatgttc atgcaccacc      1980
     accaccttca tccatcgttg gacacgtctg cagtacgagc atcgaagagc agctgagcaa      2040
     attctgggag ctggagtcat gccgagctac cagcacatta tccgtcgagg agagcaactg      2100
     tgagaaacag ttcgcaacca ccaccaccag agacaccgat ggtcgattca tcgtgcagct      2160
     accgaaacga gaggagaagc tggctcttct tggggattcg aaagggatag ccacacgccg      2220
     gttccttgcc ttggaacgtc ggctatcctc gaatgcctca ttgaagacag cttacacaca      2280
     attcatcgag gagtacgcag aacttcagca catgacagaa gtagccgaga gtgatgctac      2340
     aacttcatcc ccctcatact atcttccaca tcactgcatc gtgcgaccag atagtaccac      2400
     cactaaactc cgagtggtgt tcgacgcttc gtgtgcatca gacaccggaa catctttaaa      2460
     cgatgcactg atgatcggac ccactatcca agacgacctg atgtccattc tattgcggtt      2520
     tagaatgtcg aaatttgccc tggtagcaga catcgagaag atgtaccggc aaatcaacat      2580
     agctgccatc gatcgtccgc tgcaacgaat tctgtggcga aattctccaa ccgagccgat      2640
     acgaacgttc cagctcaaca ccgtcaccta cggcacatca tgtgcaccgt atttggccac      2700
     caaaaccctg caagtgctat ctcaggtcgg agctagcacc catcccgaag cggcaaccat      2760
     cctcggacga gacttctaca tggacgacat gctgactggc gtaaacagca ttcccgaggg      2820
     tcaacgagta tgtcagcaac tcatcgatct cctggcttct ggtggattct gcttgcggaa      2880
     atgggccacc aacaacaggc agatcttcga acatctgccc cagcatctgc aagatgaaag      2940
     gacgattctc aacttggatg cgaagtcacc gatcatcaag acactcggac tgaagtggaa      3000
     cgtttccacc gacgcttttg tattcaacat cccgcgctgg aacgcagaca acatcatcac      3060
     caaacgaaac gcgctttcgg atgtcgcgaa actgttcgac ccaatcggac tggttggacc      3120
     agttatcatc caagccaagc tgttccttca agagctgtgg agatgtcaga tcgcctggga      3180
     cgagccgtta acaccagcac tacaaaaccg atggcttttg tttcgcgaga agttggccat      3240
     gctgcaaacg atccacattc cacgctggct cttaaccgat caacgagcaa cgaatctaca      3300
     aatgcattgc ttttgtgatg catccgagaa ggcgtacgga gcggcgattt acttgcgttc      3360
     gaccaacacc gatggacgtg tgacaaccaa cctcatcact gcaaaatcca aggtggcacc      3420
     actagcagac tcccgtaaac aaaagcgtgt ttgcttaccc cggctggagc tttctgcagc      3480
     actgctactg gcacactcgt acgagaaggt gtcagacgcc ttgaagcttc aggtcgagac      3540
     catcttttgg tctgactcaa ccatcgtcct gcattggttg tctgcaactc cgtcacgctg      3600
     gaaaaccttc atcgctaacc gggtgtccga gatccaacac atcactcacg gcaaggagtg      3660
     gagacacgta ccaggaacgg acaatcctgc ggacatcatc tcccgaggaa tggatgcaga      3720
     tcagctggaa acttcaaccc tttggtggca cggaccagac tggctggcgc aaccatcaga      3780
     ggaatggccg aacactcatc aacctcgaca ggaagaattc accacggacg aattggagga      3840
     gcgaccaatc tgcatggctg tacaatccgt ggctccgaac gaacttttta gcctccgttc      3900
     aacgttcacc ggactgcaac gtctggttgc gtggctaaga agattccgac acaatacgaa      3960
     tcctgctaat catcaacaac gcagattgga tcatcatctc agcttggagg aactagccga      4020
     atctacactg tgtctagttc gcctagctca agctgaatca ttcccagaag acatcaaaca      4080
     tctatcgaaa ggcgattcgg tcggcaacaa ctcaccttta aaactactag caccgtttct      4140
     acaagatggc ctgctacgag tgggcggaag attgcgacat gcaccaatcc cgttcgaccg      4200
     aaagcatccg tacatcttac ccgccaacca tccgctgacg aatcagattg caactctgta      4260
     tcatcggacc tatcaacatg caaatccaca actgctaata gcgagcatgc gagaacgatt      4320
     ctggccactg cgagcaaaaa acctggccag aagaatcgtt cactcctgct acaaatgcta      4380
     ccgttgccgc cccacacctg cacaacaact catgggcgac cttccagcag agagagttac      4440
     accaacgtca actttcttac acaccggagt cgacttgtgt ggaccgatac actatcgaca      4500
     cacatctcgg aaggcgcaac tcatcaaggg ctacgtagcg attttcgtct gtatggcagt      4560
     gaaggctgta cacatcgaat tggtcgcaga cctgtctacc aacgccttcc ttgcggcact      4620
     tcgacgattc atcggacgac gcgggaaacc ggctatcatc gaatgcgaca acgctaggaa      4680
     tttcttgggc gcctcccgag aaattgcctc cttgtccaag caattcaacc accagtggca      4740
     aacatcagtg attaagtcct gcatcgacga tggcatccag ttcaagttca tcccacctcg      4800
     ctcacccaac tttggaggtc tttgggaggc ggcagtgaag tctttcaaaa cacacttcaa      4860
     gccaaccgtt gggaacgcca tcctcacgag cgacgaactc aacacgctac tgatccagat      4920
     tgaaggatgc ctcaactcta gaccacttac accactctcc aatgatccat ctgatctgga      4980
     agtgctgact ccaggtcact tcctcattca tcgccccatc gtatccctgg ccgaaccatc      5040
     gctggaaaag ctgccgttca accgtctcga tcgctggcaa aaggtgcagg agtttgtccg      5100
     tcggctatgg aaacgttggt caacagacta cttgtccgga ctacagcaga gaaccaagtg      5160
     gaccaagcag aaggacaacg tgaagctgga taccatggtg ctgctgaagg aggacggtct      5220
     acctccatcg aaatggtgtc ttggccgcgt cacgcagatc atcaagggag ctgacgacaa      5280
     catccgagtg gtcatcgtca agacgaaaga tggagacttc aagcgttcca tctctaaaat      5340
     ctgcgttctt cccaccgacg agccatccag ttcatcctag ttgaattaga taattcaacg      5400
     cgggggagta                                                             5410
//
ID   BEL4-I_AP   repbase;    DNA;    INV; 5997 BP.
XX
AC   Contig12244;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL4AP; BEL4-I_AP;
KW   BEL4-LTR_AP.
XX
NM   BEL4-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5997
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 435-435 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [4747-5340] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           4591..5559
FT                 /product="BEL4-I_AP_3p"
FT                 /translation="MHGGPQAILSAVRQKYWPLNGRSIARSVVHRCIKCFK
FT                 YRPVFVQPIMGDLPEARVRPTRAFKKTGVDFAGPFMIKSSLRRNAPLNKVY
FT                 ACLFVCFITKAVHVELVGDLTTQAFLNALQRFCDRRGLCTDIYSDNATNFV
FT                 GANRQLQELQALFQSTEHQERIQDTLSKSSIQWHFIPPRSPHFGGLWEAAV
FT                 KSLKAHLYRTLGNASLTFEELNTILIRVEAILNSRPLTPLSSHPSDLSVLT
FT                 PGHFLIGDALTSLPDRDERDVPTNRLSRWRRVVQFTQQLWARWTRDYLTQL
FT                 QERGKWMSSSGPKLGVGTVVLMRDDNVPPLQ"
FT   CDS           join(895..2310,2314..4296)
FT                 /product="BEL4-I_AP_1p"
FT                 /translation="MALIHDNKLMSDIQKFFYLRSCLSGDAKKVIDCLQTT
FT                 TENYQVAWTSLIMRYDNKRVLIQVRVKALFDLQPLKKESAVHLHTLIDTVS
FT                 GHLKALESLGQTPDSWGVSLSHLITSKLDANTRRAWESEATKMEDFIVPIL
FT                 IDFLKSRFRILEVIESNKNMNTQVPTDIPRFKKSGDRSSSFTTTTSFRCYN
FT                 CNGPHSIYKCTKFLALTILERIKRINDLKLCNICLRAHSDKCKSRNCPKCA
FT                 RPHNGLHSSRTNNNNIHAGGAGNSGESSNTTPPAENDRNDIANEAMINSAP
FT                 ASVNAHARQNSEAGQVLLSTAEILVFDSQNKPVLCRALLDSGSQHNFMTES
FT                 LTRRLNLKRIKSSCSIIGINDASHTSTYKVTTTIKSRIYDYSLNLEFFALP
FT                 NLTSKLPLMPVNLTELKVPVDIRLADPSFHVPKKVDIILGAEIYFELLTKE
FT                 QIQTVSRGPIFQGTRLGWVIAGPIPSPNLAENSTFSLCTSVMSEFANIENQ
FT                 IAEFWRLEEVKNCNVYTLEEKRCKQQFELNVKRGEDGRFTVGLPFRDNAPK
FT                 LGKSYDVAIRRMLSLERRFQTDTKLKEEYSKFMKEYSELGHMEITQNTIPD
FT                 GKGYYLPHHAVRNESSTSTKLRVVFDASARTSTNESLNDVLLKGPTVQEDL
FT                 VSIMTRFRIHKYVFTADIKKMYQQIWVSESQRDFQRILWREDPSQPLNVYR
FT                 LKTVTYGIVTASYLATACLQKLSEQESSKFPEACQALSCDFYVDDFLGGAM
FT                 SKQSALRLRDDLITILRGAGLELCKWSSNDPDLLLGVEAVPSANNGLDLQY
FT                 TENVTKILGLYWNKDIDAYQYKVLMYNNKTRPTKRAILSEIAAIFDPLGLI
FT                 SPVIICFKIIMQKIWQTRVDWDATLPTEIEGEWRKCRANLIHLNTLKITRS
FT                 LVVDGDIADIQLHGFADASLTAYGACLYLRVKNYNGEVIANLICSKSRVAP
FT                 LKTISLPRLELLAAVLLVRLAAKYATSLSIPIEHKYFWSDSTVVLSWISSE
FT                 SARWKTFVAHRIGEIHETTSISQWHHVSTKDNPADIVSRGYCPTKIGESNL
FT                 WWRGPMWLHKDVSDWPKENNIYSRADEVLLEARTVSHVITDRYDLSIIERY
FT                 SSLTKLIRVTAFCLRFINNASKKEN"
XX
SQ   Sequence 5997 BP; 1901 A; 1173 C; 1292 G; 1631 T; 0 other;
     tggtccttcg aaccggatta tttagttgat gcaaaataat attatataat atcgcagttt        60
     aattcataag agcatctagt gctcatcgcg taaatcgatc gtccagtgat ttaaacgcga       120
     aatccaaagt gcgtgcacaa tacttcatta tagagaagta caaggaagaa cttcgtcaag       180
     gaagaacttc gtcaaggaag aactacgtca aggtcatcga aggcaaggta agcgagttgt       240
     taatagcaca tagtctataa gtcagtgttt cggggtttat ttccttttcc cgtttaccta       300
     ttcataatat tctgacactc tcgagtctcg gttgacatta tatattagcg tatataagta       360
     tagccagtgg aaagtacgtg gtagaattag acagcgcata gaatagcgac acagtacaca       420
     ctacaatata gataatacaa tgagtgagct ggcgaacatt atcgtacgcc ggggccagct       480
     aaaaggccaa ttaactcaca tagcaaatta catccgcgat aataaaggta gtccagatat       540
     cgatcaaatt acggtaagat tggaaaagac cacagaaaca tggcatgaat ttcaacaagt       600
     tcaagcgcaa attgaagaag aaaccgagac aactaatgag agcgagaaat accgtagcga       660
     gttcgaggag ttgtattatg ataactagct aaatgcaata aaataattag agccgcgtcg       720
     ccaggcgtta attcaaatcc gtcatctaat cggacttcga acgaatccag caacgacgaa       780
     gcaaatggtc atgcaagcct acagcccgta cagtcggcaa tcaagttagc tgctatcgag       840
     ataccaaggt ttacaggagt gtatacagag tgggccgcat tctacgatat atatatggcg       900
     ttaatacacg ataataaatt gatgagcgac attcaaaaat ttttttattt acgatcgtgt       960
     ctcagtggag atgcgaaaaa ggttatagat tgtctgcaaa ctacgacgga aaattatcaa      1020
     gtagcatgga caagtttaat catgaggtac gacaacaaaa gggtgttgat ccaggtacgc      1080
     gtgaaagcgt tatttgatct acagccactg aaaaaagagt cggcagtaca tttgcatacg      1140
     ctaattgaca cggtgtctgg tcatttaaaa gcgcttgagt ctttagggca aactccagac      1200
     agttggggcg tatcgttatc tcatttaata acgtcaaaac tggatgcaaa cacgagacga      1260
     gcatgggaaa gcgaagcgac caagatggaa gatttcatag tgccaatact aatagatttt      1320
     ttaaaatcac gttttcgaat tttggaggtg atagaatcaa ataaaaacat gaatacgcag      1380
     gtaccaacag acattccaag gttcaagaaa tcaggggaca ggtcttcatc atttacaact      1440
     accacatctt tcagatgcta taattgcaat ggcccacact caatttataa atgtaccaaa      1500
     tttctagcac tcacaatact agagagaata aaaagaatta atgacttaaa attatgtaac      1560
     atatgcttac gcgcacactc cgataaatgt aagtcacgta attgtccgaa atgcgcgcgt      1620
     ccacataatg gattgcattc gtcgcgcact aataataata atatacatgc aggcggtgcg      1680
     gggaacagcg gcgaatcgtc caacaccact ccacctgcgg agaacgatag aaatgatatc      1740
     gctaatgagg caatgattaa tagcgcaccc gcatcggtaa atgctcatgc acgtcaaaat      1800
     agtgaagcag gtcaggtatt gttatcaacg gccgagattc tcgtattcga cagtcaaaat      1860
     aaaccggttt tgtgccgtgc gttactggat agtggatcgc agcacaattt tatgaccgag      1920
     tcattgaccc ggcgtttaaa tttaaaacga ataaagtcat catgttcaat aatcggcata      1980
     aatgatgcat cgcatacgtc aacgtacaaa gtaacaacta ctattaaatc gcgtatatac      2040
     gactattcat taaatttgga atttttcgca cttcccaatt taacgagcaa gttaccgttg      2100
     atgccggtca atctgacaga actgaaggtc ccggtggata taagattggc ggatccatct      2160
     ttccacgtgc ctaaaaaggt agatatcatt ttaggcgccg aaatatattt tgaattacta      2220
     actaaagaac aaattcagac agtttcacgg gggccaattt tccagggcac tcgtttaggt      2280
     tgggttatcg cgggacccat cccttcgcca taaaatctag ccgaaaattc aacattttca      2340
     ttatgtacga gcgtaatgtc cgaattcgca aatatagaga atcaaattgc cgaattttgg      2400
     cgcttagagg aggtaaagaa ttgcaacgta tacacattag aggaaaaaag gtgtaaacaa      2460
     cagttcgagt taaatgtaaa gcgtggtgaa gacgggcgtt ttacagtagg tctacctttt      2520
     cgtgacaatg ctcctaaatt aggaaaatcg tatgacgtag ccattcgcag aatgttatca      2580
     ttagaacgac gatttcaaac cgataccaag ctcaaggaag aatatagcaa atttatgaaa      2640
     gagtactccg aacttggaca catggaaatt acgcaaaaca cgattccaga tggtaaaggt      2700
     tattatttac cgcaccatgc agttcgcaac gaaagcagta ccagtactaa actgcgcgtg      2760
     gttttcgatg cgtcggcgag aacaagtacc aacgaaagtc taaatgatgt gcttctaaag      2820
     ggacctaccg tacaagagga tttggtctct ataatgacgc gatttcgtat acacaaatac      2880
     gtattcacag ctgatataaa aaaaatgtac cagcagattt gggtgtcgga aagccaacgt      2940
     gatttccagc gcattttgtg gcgtgaagac ccgagccagc cactaaatgt atatcgacta      3000
     aaaactgtta cgtatggcat agtcaccgct tcatacctgg caacggcctg tttacaaaaa      3060
     ttatccgaac aagagtcgtc aaaatttccc gaagcctgtc aggccctaag ttgtgatttc      3120
     tatgtagacg attttctcgg cggagctatg tcaaaacagt ctgcattaag attacgcgat      3180
     gacctaataa cgattttgag gggcgctggt ctagagctgt gcaaatggtc gagcaacgat      3240
     cccgacttgt tgcttggtgt tgaagcagta ccaagtgcca acaatggctt agatttgcag      3300
     tatacggaaa atgttacaaa aattttggga ctttattgga ataaagacat tgatgcatat      3360
     caatacaaag tgttaatgta caacaacaaa acgcgaccaa caaaacgcgc gatattgtcc      3420
     gagatcgccg caattttcga tccgcttggt ttaataagcc ccgtaataat ttgttttaaa      3480
     atcataatgc aaaaaatatg gcaaacgcgg gtagattggg atgcaacgtt accaacagaa      3540
     attgaaggcg agtggcgcaa gtgccgtgca aatttaatac atttaaacac gttaaaaatt      3600
     acgcgttcgc tcgtagttga tggtgacatt gcggatatac aattacatgg gttcgcggac      3660
     gcatcactta cagcatatgg cgcttgtcta tatctccgcg taaaaaacta taatggtgag      3720
     gtcatagcta atttaatttg ctcgaaatca cgtgtcgcac cattaaaaac aatttcattg      3780
     ccacgtctag agctattagc cgccgtccta ctagtgcggc tggcggccaa gtacgcgacg      3840
     agtttatcta taccaattga acacaaatat ttttggtctg actctaccgt cgttttatct      3900
     tggatatcgt cggaatcggc aagatggaaa acatttgttg cacaccgcat tggcgaaata      3960
     catgaaacta cttcgatttc gcagtggcac cacgtcagca ccaaggataa cccggcagat      4020
     atagtttcgc gcggctattg tcctacaaaa atcggtgaat caaatttgtg gtggagggga      4080
     cctatgtggt tgcacaaaga tgtttctgat tggccgaaag aaaataatat ctatagtaga      4140
     gcggacgaag ttttattaga agcgcgaacg gtatctcacg taattacaga caggtacgat      4200
     ttgtcgatca tagaaagata ctcatctcta acgaaactaa tacgcgttac tgcattttgc      4260
     ctacgattta ttaataatgc gtcgaagaaa gaaaattaaa ttggtgcgct tcaggcagat      4320
     gaaatcgaca aggctgcgaa tagtattatt aagttagtgc aagctagtaa ttttacagga      4380
     gagatcaagg acttacgtaa atcaggccaa gtaagctcta aaattgtatt gttacgcctg      4440
     catccgtttt tagataaaaa tgatttgatc agggtgggcg gtcgcctagg aaatgcattt      4500
     actctaaatg aatcgcagca acatccgata attttgcctg cgaaaaatgt tttaaccaaa      4560
     ttaatattta tacacgaaca tgatagatta atgcatggcg gcccacaggc tatattatct      4620
     gcggttcgtc aaaaatactg gccacttaac ggacgcagta ttgcgcgtag cgtagtacat      4680
     cgctgcataa aatgttttaa atatagacct gttttcgtac agcctatcat gggtgatctt      4740
     cccgaggctc gagtacggcc tacacgggca ttcaaaaaga caggtgtaga ttttgcgggt      4800
     ccatttatga tcaagtccag tttaaggcgg aatgctccat tgaataaggt atatgcttgc      4860
     ttatttgttt gttttattac taaggcggtg cacgtagaat tagtaggcga cctgaccact      4920
     caagcgtttc ttaatgcgtt gcagcggttc tgtgatagac gcggactgtg cacggacatt      4980
     tattccgata atgcaacgaa tttcgtgggc gccaaccgtc aactccaaga attgcaagca      5040
     ctttttcaat ctactgaaca tcaggagcgt attcaggaca cattatccaa atcaagcatt      5100
     caatggcact ttataccacc gaggtcacca catttcggcg gcctttggga agcggctgtg      5160
     aagtcactga aagctcattt atatcgtaca ctaggcaatg cctcactcac ttttgaagag      5220
     ttgaacacta tattaatacg tgtagaggca attttaaatt cgcgaccttt aactcctttg      5280
     tcctcacatc cctccgattt atccgttctc acccccggcc actttcttat tggtgacgca      5340
     ttaacttcgc tacccgatcg tgatgagaga gatgtcccga ccaatcgatt gtcgagatgg      5400
     cgacgagttg tgcagttcac gcaacagtta tgggcccgtt ggacgaggga ttatctaacg      5460
     caactccagg aaaggggaaa atggatgagc tccagcggac ctaagctcgg agttggtacg      5520
     gtcgtgctca tgcgcgacga caatgtgcct ccgctccaat gatccatggg cagggtagtc      5580
     gaggtcattc acggttccaa tgggcaagta cgggtggcca aggtgcgaac ttgcaaaggc      5640
     gaattttccc gggcagttcg ttatttatgt ccccttctct tagagggcaa ttcaccactc      5700
     gatcaacagt aaaaaaaaaa aattgttttt tttttttaag tcagggttaa taaccgagta      5760
     ttatatatag tatggaatta attaacttta ttgtataaaa tttgtggaat tatttaatat      5820
     ttatagtaac catatgtcat gatttatttt tttttttggc gtacatatgt atttttattt      5880
     ttatgtcatg tataagctgt tgattgtata acaatgtata tattaatgtg cataataatg      5940
     tatttgtata ataactataa gaaaaatttg aaacttaatg ttccaaggtg ggcggca         5997
//
ID   BEL4-LTR_AG repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   02-MAY-2003 (Rel. 8.04, Created)
DT   02-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL4-LTR_AG is a long terminal repeat of the BEL4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL superfamily; BEL4; BEL4-I_AG; BEL4-LTR_AG;
KW   Long terminal repeat; RETRO25_AG_LTR; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-316
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO25_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 8-8 (2002).
XX
RN   [2]
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL4_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (13-APR-2003).
XX
DR   [1] (Consensus)
XX
CC   BEL4-LTR_AG flanks an internal portion of BEL4_AG (deposited as
CC   BEL4-I_AG).
XX
SQ   Sequence 316 BP; 89 A; 73 C; 60 G; 94 T; 0 other;
     tgttacggca agcgtaatgg taacgcgtca cccttagtac gcctagcgta aggtagaggg        60
     cgctttcaag aaatttacct acgtgtaaat tttacttaat cataattcta ttacgcagtg       120
     caaattgctg tagatcggta tcgtgcagct cgaattcccg caagtgcagc tcgaattacc       180
     gcaagtgcag ctcgaattcc cgaattctgc cgtatataag cgagtgtttt tcctgaataa       240
     atttagtcaa gttccagagt tcaaagcaac aacatcgtgt cttcatcatc ttcaaacttc       300
     ctcttcatca ttaaca                                                       316
//
ID   BEL4-LTR_AP repbase;    DNA;    INV; 280 BP.
XX
AC   Contig12244;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL4AP; BEL4-I_AP;
KW   BEL4-LTR_AP.
XX
NM   BEL4-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-280
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 436-436 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 280 BP; 89 A; 55 C; 46 G; 90 T; 0 other;
     tgttcggtca ctactcatta tatattatta ttatcggttg tactgttatc ggtgactcga        60
     ccgggacacc ggatctataa aattattgta agtcagtcga catagtatcg cgcaaccgag       120
     tgcacgtcgt tcgaccctct aagctttttc gtattattaa ttgtaatatt tcaagttatg       180
     tttgcatcag ctaaataaat ttatacccaa agtaaaaaat caagtcgagt aattagtttc       240
     atgagtacct acccaaacca cgtaacatga gctaaaaaca                             280
//
ID   BEL5-I_AG   repbase;    DNA;    INV; 5282 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   BEL5-I_AG is an internal portion of the BEL5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL5-I_AG; BEL5-LTR_AG; BEL5_AG; Bel clade; RING Zn-finger;
KW   integrase; peptidase; reverse transcriptase.
XX
NM   BEL5-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5282
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A. and Jurka J.;
RT   "BEL5_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(4), 69-69 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL5_AG is an young family of Bel/Pao-like LTR retrotransposons.
CC   BEL5-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL5-LTR_AG
CC   LTRs. The BEL5-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 20 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1723-aa BEL5_AGp Bel-like
CC   protein
CC   (pos. 93-5261).
CC   BEL5_AGp is composed of the peptidase (pos. 118-200), RING
CC   Zn-finger (pos. 300-375), reverse transcriptase, and integrase
CC   (pos. 1414-1600) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..5261
FT                 /product="BEL5_AGp"
FT                 /note="Bel-like protein: composed of the peptidase
FT                 (pos. 118-200), RING Zn-finger (pos. 300-375),
FT                 reverse transcriptase, and integrase (pos.
FT                 1414-1600) domains"
FT                 /translation="MAEARKVKSLRIQQTATQLSIQAIHTFSKSYNKETQR
FT                 AEAIIRKQNLQKQYAKFIDLQDELLPLDEGNEAENLALRQTVESAYYDAEA
FT                 NLASAVEANDKKPCVPASNIKLPDVKLPVFDGKPQNWSSFHSIFVAMIDSA
FT                 ELYSGVQKLYYLRTSLSGPALQLIQSVPISEENYSVAWNLLLNHYNHPKRL
FT                 KQLHVEALFEDAALKKECANELRKLIENFEANVNALTQLGEPTAQWDTLLI
FT                 QMLSRQLDPSTLRSWKEHSAEKKIDSYSDLVAFLYRRVGVLEVLPSTSSGK
FT                 PPKQRVFATTTMPNNNTKGCACCNRDHPVYTCDEFKKLSLNAKQKVITQHK
FT                 LCYNCLRPGHHLRDCKSASTCKSCHKRHHTQLCSLPQPSPTVPSSEEDQRD
FT                 PPTTLASTSVVESITCASAGQHKTVLLATATVIIVDDEGHKHNARVLLDSG
FT                 SESCFITENLAQQMKSTRERSNLCISGISSTNTTAKQSIRATLRSRVGRYF
FT                 ANLQFFILPRVTGNLPSSSIDTTGWNLPDNIFLADPHFDCIGRIDVLIGAE
FT                 VFFDIMRPAGRILLGKDQPVLVNSELGWIVSGPAVSTLTPTSQASSITVNH
FT                 ASTTVQDVHKLMERFWXIEEGEIVNAQSNEHAACEEHFRRTVSRNSSGRYV
FT                 VRLPLKEHLLTKLVDNRKAAVRRFHFLQSRLSSNNEFRNSYSSFIDEYAEL
FT                 GHMKRISEEEYNNTNQHHYYLPHHAVTRQESLTTKLRVVFDASSKTSSGIS
FT                 LNDVLMVGPTIQDDIRSIIMRARKHSIMIVADIKMMYRQVLVDXRDTSLQL
FT                 IVWKPTPSESLQTYKLCTVTYGTASAPYLATRVLSQLADDEGSSYPIAAKV
FT                 LKKDFYVDDLLTGTSTAAEASEVITQLTALVSKGGFTLRKWATNDEQVRQT
FT                 ISKDKLSEDESFCFDRDQIIKTLGLHWHPLNDSMTYRIKPFEEKLITKRST
FT                 LSGIARLFDPIGLIGPVVTKAKIFMQSLWTLKASDGSIWNWDTELPEQLQK
FT                 QWLSFKNELNLLNTIQIQRCVLLNEATSVQLHIFADASQTAYGACAYLRST
FT                 NKAGQIKTSLVASRSRVAPLKSQSIPRLELCSALVASELYKSIQQAMQLDA
FT                 DIYFWLDSTVALYWIQASPSKWNTFVGNRVSKIQQATSSCTWSHINGQENP
FT                 ADHISRGLTASELVNCDLWWNGPPWLQLDQEQWPKPQLSSQLPSEVSIEGR
FT                 SITTTAAATKSPPCDAILLVNELLSKFSDYHKLLRVIAYCFRMRTKRDSSQ
FT                 ETVVISTDELWNAEIRILQVVQRDIFEKEWTQLRQNSPVSNKSRLKWFHPF
FT                 LCDDNLIRIGGRLSKSNQPFESKHQILLSAGHPLAEMLIRHLHKKHHHAAP
FT                 QLLITILRQKYWVIGARSLAKRICHECVPCCRARPRLLEQFMAELPTSRIT
FT                 PSRPFSIVGVDYWGPIGLSPIHRRASSGKAFVAVFICFATKAVHLELVANL
FT                 TTAKFIQAFRRFVARRGLCSDIHSDNGRNFLGASRELRALVTSKQHRIEII
FT                 QECTSQGMRWHFNPPKASHFGGLWESAIHSAQKHFFRVLGKTTLPQDDMET
FT                 LLCQIECCLNSRPLVPLSDDPSDLEPLTPGHFLVGSNLKAVPDNKLEDIPS
FT                 NRLKHYQLVQKLLQQIWTRWSAEYLATLQPRSKWLKPPVKIDVGQLVLVKD
FT                 ESTTPLHWPLGRIIKTHPGDDGVARVVTLKTASGEYTRPIAKLCLLPVTSM
FT                 VQN"
XX
SQ   Sequence 5282 BP; 1604 A; 1294 C; 1086 G; 1296 T; 2 other;
     ttttggtcct tcgaatcgcg gatcgacgat tgatcatcat ttagttcttc gagcaacgaa        60
     ttgtggtcat tcgaagagtg taaacaaacg aaatggcaga ggcacgtaag gtaaagtcgc       120
     tgcgtatcca gcaaacggcc acgcaactct ctatacaggc aattcataca ttttccaagt       180
     cttataacaa agaaacgcaa agagcagagg caattattcg caaacaaaac ttacaaaaac       240
     aatatgcaaa attcattgac ctgcaagatg aactgttgcc cctagatgaa ggcaatgaag       300
     cggagaatct tgcgcttcga caaaccgtgg aatcagcgta ctatgatgct gaagctaatt       360
     tagctagtgc tgttgaagca aatgataaaa aaccatgtgt accagcatct aacatcaagc       420
     taccggacgt gaagcttccc gtcttcgatg gcaagccaca aaattggtct agctttcatt       480
     cgatctttgt cgcgatgatc gatagtgcgg agctgtattc aggcgtacaa aagttgtatt       540
     acctgcgtac atcgctatcc ggcccagcac tccagctaat acaaagcgtt ccaatcagcg       600
     aagaaaacta ttccgtggca tggaatctgt tgctcaatca ctacaaccac ccaaagagat       660
     tgaagcagtt gcatgtggaa gcattatttg aagatgctgc gctgaaaaag gaatgtgcaa       720
     atgaactacg caaactgata gaaaatttcg aagccaatgt aaatgcatta acccaattag       780
     gcgaaccaac tgctcaatgg gatacgcttc taatacaaat gcttagccgt cagctcgatc       840
     cgtcaacact acgaagctgg aaagaacatt cggcagaaaa gaaaatcgat tcgtatagtg       900
     atttggttgc gtttctgtac cgtcgagtag gagtgttaga agtgttgcca tcaacgtcat       960
     caggtaaacc acccaagcaa cgtgtatttg caacaaccac aatgccgaac aacaacacca      1020
     agggttgtgc ttgttgcaac agagaccatc ctgtgtacac gtgcgatgag tttaaaaaac      1080
     tatccttaaa tgcaaagcaa aaggtcataa cacagcacaa attatgttat aattgtcttc      1140
     gtcctggtca tcatctacgt gactgcaaat ctgccagcac ctgtaagagt tgtcacaagc      1200
     gccatcatac acaattgtgt tctttaccac aaccctcgcc tactgtaccg tcatcagaag      1260
     aagatcaacg agatcctccg accacgttag catcaacatc ggtcgtcgag tcgatcacat      1320
     gtgcttcagc aggtcaacat aagacagtcc tcctggccac tgccactgtc ataatcgttg      1380
     acgatgaagg ccacaaacac aacgcacgag tgctgctaga ttcaggaagt gagagttgtt      1440
     ttatcactga aaatctagcc cagcaaatga aatcaacaag ggagagaagc aatctatgca      1500
     tctctggaat cagttccacc aacacaaccg caaagcagag catccgagcg acacttcgct      1560
     cgcgggttgg gcgatacttt gccaacctgc agttcttcat actaccaaga gtcacgggga      1620
     atcttccatc gtcatcgatc gacaccacgg gatggaacct gcctgacaac atctttcttg      1680
     cggaccctca cttcgattgc atcggccgaa ttgatgtctt gatcggcgcg gaggtctttt      1740
     tcgacattat gagaccagct ggacgaatac ttctcgggaa ggatcaacca gtccttgtca      1800
     actcggagct cggatggatc gtatcggggc cagccgtaag tacactcaca cctacttcac      1860
     aagcttcttc tattacagtc aaccatgcat ctacaacggt tcaagatgtt cataaactta      1920
     tggaacggtt ctgggmaata gaggaaggtg aaatagtcaa cgcacaatct aatgaacatg      1980
     cagcgtgcga agaacacttt cgtcgcaccg tttcacgaaa ttcttccgga cgctacgtcg      2040
     tgcgtcttcc actgaaagaa catcttctca caaaactagt tgacaatcgc aaggcagcag      2100
     ttcgtagatt tcattttttg caatcccggc tcagttctaa caacgaattt agaaacagct      2160
     acagctcatt tatcgatgaa tacgctgaac tggggcacat gaagcgcatt tcggaggaag      2220
     aatataacaa cacaaaccaa catcattatt accttccaca ccatgcggtg acgcgtcaag      2280
     aatcactaac aaccaagttg cgcgttgtct ttgacgcctc cagcaagaca tctagcggca      2340
     tatcgttgaa cgatgttttg atggtagggc caacaattca ggacgatatc cgatctatca      2400
     tcatgagagc acgtaaacat tcgatcatga tagtcgctga tattaaaatg atgtaccgtc      2460
     aagtgctcgt agatgmtcgt gatacatcgt tacaactcat cgtatggaag ccaacaccgt      2520
     ccgaatcact gcaaacatac aaactgtgta ccgtcacata cggtacagct agtgcaccct      2580
     atttagcaac acgagtattg tcacaacttg ccgatgacga aggcagtagc tatcctattg      2640
     cagccaaggt attgaaaaaa gatttttacg tcgatgattt acttaccggc acttccaccg      2700
     cagccgaagc ttccgaagta attacacaac taactgcgct tgtttccaaa ggtggtttta      2760
     ctctacgtaa atgggccacg aatgatgaac aagttcgcca aaccatctca aaagacaaac      2820
     tttcagaaga cgagtcattt tgtttcgatc gcgaccagat tatcaaaact cttggtttgc      2880
     attggcatcc attgaatgac tccatgacgt atcgcatcaa accatttgaa gaaaaactga      2940
     tcacaaaacg ctcaacgtta tcgggaattg cacgattatt cgatccaatc ggccttatcg      3000
     gaccagtagt cacgaaggca aaaatattca tgcaatctct ctggacactt aaggccagcg      3060
     atggctcgat atggaactgg gatactgagc ttccagagca gctccagaaa caatggctat      3120
     catttaaaaa tgagctcaac ttacttaaca caatacaaat acaacgatgc gttctactaa      3180
     atgaagctac tagcgtccaa ttacacattt ttgccgacgc atcccaaaca gcatacggcg      3240
     cttgtgccta cttgcgctca actaacaagg caggccaaat caaaacatca ctagtagcat      3300
     ctcgatcgcg ggtcgcgcct cttaaatcac aaagcattcc cagactagaa ctatgcagcg      3360
     ccctcgtagc aagtgagcta tacaaatcta tccagcaagc tatgcagcta gacgccgata      3420
     tctatttttg gcttgacagt acagtcgctc tttactggat tcaagcatca ccgtcgaaat      3480
     ggaacacctt tgtcggcaat cgtgtgtcca aaatacaaca agccactagc agttgtacat      3540
     ggagccacat aaacggccaa gaaaatcctg cagatcatat ttcacgggga ttaactgcaa      3600
     gcgaactcgt caactgtgac ctttggtgga atggcccgcc atggctccaa ctagatcaag      3660
     agcaatggcc caaaccccaa ctgtcatctc aactaccatc agaggtttca atagaaggtc      3720
     ggtcgatcac tactacagct gctgccacca aaagtccccc atgcgatgca atactgttgg      3780
     taaacgagtt gctatccaag ttttctgact accacaaatt gctacgagta attgcatatt      3840
     gctttcgaat gagaactaaa cgtgattctt cgcaagaaac tgtcgttatt agcacagacg      3900
     aattatggaa tgctgaaatc agaatcttgc aagtggttca aagagatatc tttgaaaaag      3960
     aatggactca gctccgtcaa aacagtcctg tttccaacaa atccagacta aaatggttcc      4020
     atccgtttct ttgcgatgat aatcttatcc gcattggtgg acgtttatca aaatctaatc      4080
     aaccatttga aagcaaacat caaatattgt tgtcagcagg acatcctctg gcagaaatgc      4140
     tgattagaca cttgcataaa aaacatcatc atgccgcacc gcaactattg atcaccatcc      4200
     ttcgtcaaaa gtattgggtc ataggggcca gatccctagc taaacgcatt tgccatgaat      4260
     gcgtaccttg ttgtcgtgct cgtcctcggc tgctagaaca atttatggca gaactaccaa      4320
     cttcacgcat aacaccaagc cgaccattct caatagtggg agtggattat tggggtccca      4380
     tcggtctatc acccattcat cgccgtgcat catctggtaa agcatttgta gctgtcttta      4440
     tctgtttcgc tacaaaggct gttcatctcg agctcgtcgc aaaccttacc acagccaaat      4500
     tcatccaagc atttcgtcgt ttcgttgctc gtcgtgggtt atgcagtgac attcacagcg      4560
     acaacggacg gaacttccta ggcgcctcca gagaactgcg agcattggtg acgagcaaac      4620
     aacatcgaat tgaaatcatc caagaatgca cgtcacaagg aatgcgctgg catttcaatc      4680
     caccgaaagc gtcacacttt ggtgggctat gggagtcagc aattcattct gctcagaagc      4740
     attttttcag ggtccttggc aaaacaactc tgcctcaaga tgacatggaa acgttgcttt      4800
     gtcaaattga atgctgcctc aactcacgtc cactggttcc tctcagtgac gatccgtctg      4860
     acttagagcc actaacacca ggccattttc tggtcggaag taatctaaag gcagtccctg      4920
     ataacaaatt agaggatata ccatccaatc gtcttaaaca ttaccaactg gtacaaaagc      4980
     ttctacagca gatttggaca agatggagcg cagaatattt ggcaactctt cagcctagga      5040
     gcaaatggct caaaccacca gtaaaaatag acgttggcca acttgttttg gtcaaggacg      5100
     agtcaactac cccattgcat tggccgctag gacgcatcat caaaacacac ccaggcgatg      5160
     atggagtagc acgagttgtg acattgaaga cagcttctgg cgaatacact cggccaattg      5220
     cgaagttgtg tcttcttcca gtaacttcaa tggttcagaa ctaacgtctg aaggggccag      5280
     ta                                                                     5282
//
ID   BEL5-LTR_AG repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL5-LTR_AG is a long terminal repeat of the BEL5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL5-I_AG; BEL5-LTR_AG; BEL5_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-210
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL5_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 70-70 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL5-LTR_AG flanks an internal portion of BEL5_AG (deposited as
CC   BEL5-I_AG).
XX
SQ   Sequence 210 BP; 73 A; 50 C; 43 G; 44 T; 0 other;
     tgttcgcgca acgcgaatgt tctcgcaacg cgaatgatga gaactcaacc cgtttgtaaa        60
     cacaacaaca catgtgtcat ttgcgcacag acggagaaac gggaagcggg tgtcaaaaaa       120
     ccacatggcg atacagtagc agcgaataaa gaactctaca tttttctaca gcaaaaaaaa       180
     tccagtgtta tcacttgagt tatcccacca                                        210
//
ID   BEL6-I_AG   repbase;    DNA;    INV; 5286 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL6-I_AG is an internal portion of the BEL6_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL6-I_AG; BEL6-LTR_AG; BEL6_AG; Bel clade; RNase H; integrase;
KW   peptidase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5286
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL6_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(4), 71-71 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL6_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL6-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL6-LTR_AG
CC   LTRs. The BEL6-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 13 copies; they are ~0.3% divergent from
CC   the consensus sequence. Some copies can be active.
CC   The consensus sequence encodes one 1733-aa BEL6_AGp Bel-like
CC   protein
CC   (pos. 65-5263).
CC   BEL6_AGp is composed of the peptidase (pos. 150-275), reverse
CC   transcriptase, RNase H (pos. 1090-1180) and integrase (pos.
CC   1450-1600)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..5263
FT                 /product="BEL6_AGp"
FT                 /translation="MTRTPRTSRTPTVKPAPQPGWVDVIVAVRPHVHMRDL
FT                 AYGELIRIRDNIVQAKEEGKALTAVQCKVFGKKADSALEEHNKHYGEIIKH
FT                 DESEVHDAKFKETVKLHEEVMMEIESASEALAAQSISPKALIPAPSVSSVI
FT                 VNAPLPRPIPSFSGKYEEWARFKTIFKDIVDKSSEDSRIKLYHLEKALSGE
FT                 AAKVIDEKTINDGNYERAWQLLSERYDNKRRMVDLHISGLLNLKKVNEESY
FT                 VGLRGLVESVESHVENLKYLGENFTGLSCAMVIHLIANALDIETKKLWEAS
FT                 VPRNELPCYEKTLCFLKERVSVLERCQGNVAAGQRGRFVSKGPSSSGVTPM
FT                 RSNAATTVCSVVVCELCKGAHETFKCSELMRLHGKDRESFIRSKRLCLICL
FT                 KPGHWRNRCKSHLNCNRCHGPHNTVLHWDNGPEPVSREPEQVSASQHVNNT
FT                 DAAGSIVLLQTVLLYAELPNKEVLLCRAMLDSGSQISCVTEALATKLGVNL
FT                 VNVNVPVKGIGNIESSVKKKCTFTVKSRCSDFAMDVTCFVYREITGRIPSV
FT                 YFDTSKWNLPDKSMLADPYFNNPSCVDILLGMDCLSEIMESGSVKLAKTLP
FT                 MMTDTHFGWVIGGRVAEIHKEREVYTNVVTKENLETIVQRFWEVEDVTSER
FT                 SVKVEDEICEEHFVKTHYRESSGRYVVQLPLRESISQLCCSRSVALRRFYL
FT                 LETKLLKNPSLREQYQAFMSEYEELGHCRVVDESEDDGSVKRWYLPHHAVL
FT                 NPAKNTTKCRVVFDASAKVNGLSLNDVMMTGPKVQHDLLSIKLRFRMPRYV
FT                 VSADISKMFRQIKVDPCDSPLQRVFWRASPNEQLRVLELTTVTYGTAAAPF
FT                 LATRTLLQLARDEREGFPLASRIIEENFYVDDGLFGANDIETVHAAQVQLI
FT                 EVFRKAGMTLHKWSANDERLLESIPFEDRDALTKIGDCEANEIIKTLGLMW
FT                 NPMNDEFIFLTKVPSKGRTPTKREVLSAIAKIFDPLGLISPVVVLAKILMQ
FT                 KLWLAKLDWDDQISEPLIEEWDNFLEALPTENQVRIPRHVVSTNAVSLEIH
FT                 GFADASLKAYGACVYIRSIERNGEAQLRLVISKSRVAPLSNVTIPRMELLA
FT                 ASLLCRLVKKVLEALKDFNFETINLWSDSQIVLAWLKKPIECLNVFVRNRV
FT                 AEINENRAFIWRYVRTHQNPADVISRGQSASLLVSNEMWWNGPEFLRTCEI
FT                 PNVCIDELNDDEIPELRNEVICNVIVPLKVLPILEKYESFRKTQRILAYIV
FT                 RFKQNTKRRKGERINDPNPTIPELRESMRWIIRAIQHQDLPEVVSAVKNSK
FT                 PLQRYQDLNLFLDGELLRVGGRIRHANLAFGNKHQLLLPNRNVITHRLIAT
FT                 IHRENLHVGPSGVIAILRQQFWVVNARSTVRMVLHKCITCFRSKPTTLEQQ
FT                 MGDLPSYRVTAAPTFQRVGLDFAGPIMLKSGIRRVAAIKGYICVFVCMVTK
FT                 AIHLEAVEDLSTGAFLSALRRFVSRRGIPEEIFSDNATNFVGAKNELRELY
FT                 EMFRKEATGQGIFQFCQEKEIVWKMIPPGAPHFGGIWEAGVKSVKSVLKKI
FT                 YKSASLTITDFSTLLCQIEAILNSRPLYAHSNDPNDLECLTPAHFTIDRPL
FT                 IGVAEPSYLDMPEGRLNKWQRIQQLRQQFWNRWQREYLCELQTRYKWTKIR
FT                 DNVKEGALVLIKEDNTPPQLWKLGRIARVFPGEDGLIRVVDVKTRSGEFKR
FT                 PVHKLALLPVIDP"
XX
SQ   Sequence 5286 BP; 1547 A; 946 C; 1376 G; 1417 T; 0 other;
     ttggtccttc gaacttcgga tattgaccct ttgtgctttg gatatcggta aaaatcgcgt        60
     catcatgact cgaacgcctc ggacgtctcg cactccaacc gtaaagccgg cgccacaacc       120
     cggttgggtg gatgtaattg ttgctgtaag gccgcatgtg cacatgcgtg accttgcgta       180
     tggcgaattg attcgcataa gggacaacat tgtgcaggcg aaggaagagg gaaaggcgct       240
     gaccgcggta cagtgcaaag tgttcgggaa gaaggcagat agtgctttag aagaacacaa       300
     caaacattat ggtgagatca taaaacatga cgaaagtgaa gtgcatgacg ccaagtttaa       360
     ggagacagtg aaattgcatg aggaggtgat gatggaaata gaaagtgcat ctgaagccct       420
     tgcggcacag tccatttcac caaaggcatt gatacctgct cctagcgttt cgtcagtgat       480
     tgtgaatgct ccgcttcctc ggccaatacc ttcgttcagt ggcaagtatg aggagtgggc       540
     gcggtttaaa acaatattca aggatattgt tgacaaaagt agtgaagatt cgcgtatcaa       600
     gttgtatcat cttgaaaagg ccttgagtgg tgaggctgcc aaggtaatag atgagaaaac       660
     aataaacgac ggtaattatg aacgtgcgtg gcaactgtta tccgaacgtt atgataacaa       720
     acggcgtatg gtagacttac atattagtgg acttttgaat ttgaaaaaag tgaatgagga       780
     aagttatgta ggtttgcgcg gtttggttga atcggttgaa agtcacgtgg aaaatctaaa       840
     gtatttaggt gaaaacttta ccggtctgtc gtgtgcgatg gtgatacatt tgatagcgaa       900
     tgcgttagat attgaaacaa agaaactatg ggaagcgagt gtccctagaa atgaacttcc       960
     gtgttatgaa aaaaccttgt gcttcctaaa agaaagagtg tcggttctag aaaggtgcca      1020
     aggaaatgtt gcagcggggc aaaggggacg ttttgtttcg aaagggccca gctcaagtgg      1080
     tgttacgcct atgagatcga atgcagctac aaccgtgtgc agtgtagttg tgtgtgaatt      1140
     gtgtaagggt gcccatgaaa cgtttaagtg ctctgagctg atgcgactgc atggaaagga      1200
     tcgggaaagt tttattagat cgaagcgtct ttgcttaatt tgcctaaaac cgggacattg      1260
     gcgaaatcgt tgcaaatcgc atttgaattg taacaggtgc cacggaccac acaacacggt      1320
     attgcattgg gacaacggtc cagaaccggt ttcaagggaa cccgaacaag tgagcgcgag      1380
     ccagcatgtg aacaataccg atgcggcggg aagtattgtt ctcttgcaaa ccgtcttgct      1440
     ttacgcggaa ttaccaaaca aagaggtgtt gttgtgtcgt gcgatgttgg acagtggatc      1500
     gcaaatcagt tgtgtgactg aagcacttgc aacgaaatta ggcgtaaatt tggtaaacgt      1560
     gaacgtaccg gttaagggga ttggcaacat tgaatcttcg gtgaagaaaa agtgtacttt      1620
     tacagtgaaa tctcggtgta gtgattttgc tatggacgtg acatgttttg tgtatcgtga      1680
     aataacaggt agaataccct ctgtgtattt cgatacgtcg aagtggaatt tgccggataa      1740
     atcgatgttg gccgatccat atttcaacaa tccaagttgt gtagacattt tattgggaat      1800
     ggattgtctt tcggaaataa tggaatctgg ttcagtgaaa ttggcaaaaa cacttcccat      1860
     gatgacggac actcatttcg gatgggtgat aggtggacgt gttgcggaaa tacacaaaga      1920
     gcgtgaggtg tacacaaatg ttgtgacaaa agaaaatttg gaaacaatag tgcaaaggtt      1980
     ttgggaagtt gaagatgtga caagtgagcg ttccgtgaag gtggaagacg agatatgtga      2040
     agaacatttt gtgaagacac attatcgtga atccagtggc aggtatgttg tgcagttgcc      2100
     tttaagggaa tcgataagcc aattgtgttg ttcgcgaagt gtagcgctgc gtaggtttta      2160
     tttgttggaa acaaaactgt tgaaaaatcc atcgttacgt gaacaatatc aagcgtttat      2220
     gagtgaatac gaggagttag ggcattgtag agtggttgat gaaagtgagg acgatggctc      2280
     cgtgaaaagg tggtatctgc cgcatcatgc tgtattgaac ccggccaaga acactaccaa      2340
     gtgccgtgtg gtgttcgatg cttcggcgaa ggtaaacggc ttgtctttga acgacgttat      2400
     gatgaccggc cctaaggtac aacacgactt actttccatc aagctgcgtt ttagaatgcc      2460
     tcgatatgtg gtaagtgccg atatatctaa aatgtttcga cagataaagg tggatccctg      2520
     cgacagcccg ctacaacgag tattctggag agcttcgccg aatgaacaac tgcgtgtgct      2580
     tgagcttacc acggtgacct acggaacggc agcagcacct tttctagcaa cgcgaacgtt      2640
     gttgcagcta gcgagagatg aacgagaagg ttttccctta gccagtcgca ttattgaaga      2700
     gaatttttat gtcgacgatg gattgtttgg ggcaaatgat atcgaaactg tccatgctgc      2760
     acaagtgcaa ctcattgagg tgtttagaaa ggcgggtatg acacttcata aatggtcagc      2820
     gaatgatgaa aggcttttgg aatcgatacc atttgaagat cgggatgctc taacaaaaat      2880
     cggcgattgt gaagctaacg aaatcatcaa aacgttaggt ttgatgtgga atccgatgaa      2940
     tgatgaattt atatttttga caaaggtacc gtctaagggc agaacaccta ccaaacgaga      3000
     ggttctgtct gccattgcaa aaatatttga cccattgggg cttatttctc cagtggttgt      3060
     gttggcaaag attttgatgc aaaagctatg gttagcaaag ttggactggg atgatcaaat      3120
     ttctgagccg ttgatagaag aatgggataa ttttttggaa gcattgccaa cagaaaatca      3180
     agttcgaatt cctcgacatg tagtgagtac aaatgcagtt tcattagaga tccatggatt      3240
     tgcggatgct tctttgaagg catatggagc ctgcgtctat ataagatcaa tagagaggaa      3300
     tggtgaagcg caattgagat tagtgatcag caaatctcgg gttgcccctt tatcgaacgt      3360
     gacaattcct agaatggaac tgcttgcagc ttcattgctt tgtcgtctag tgaaaaaagt      3420
     actggaagca ttaaaggatt ttaatttcga aacgattaac ttgtggtcgg atagccaaat      3480
     agttctggca tggttgaaaa agccgataga gtgcctgaat gtttttgtac gaaatcgtgt      3540
     agccgagatc aacgagaacc gagcattcat ttggcgttat gttcggacac atcaaaaccc      3600
     tgcggatgtt atatcaaggg gtcaatcggc gtcgctactg gtttcaaatg agatgtggtg      3660
     gaatggtccg gagtttttac gtacttgtga gataccaaat gtttgcatcg atgaactaaa      3720
     tgatgatgaa attccggaat tgcgcaacga ggttatctgc aatgttatcg taccgctgaa      3780
     agttctccca attttggaga aatatgaatc ctttagaaag acacaaagaa tacttgctta      3840
     catcgtgcgg ttcaaacaaa acacaaagcg tcgcaagggc gaacgcatta atgatccaaa      3900
     ccctactatt cccgaattgc gagaatcgat gcgttggatc attagagcaa ttcagcatca      3960
     ggatctaccg gaagtagttt cggccgtaaa aaatagcaaa ccgttgcaac gttatcaaga      4020
     ccttaacctt tttttggatg gtgagttact gcgggtagga ggtcgtataa gacatgcaaa      4080
     tctggctttt ggaaacaagc atcaacttct tcttccaaat cgaaatgtga ttacacatcg      4140
     tttaattgca acaattcatc gtgaaaattt gcacgtcggg ccatctggag tgattgcgat      4200
     tcttcgtcag caattttggg ttgtcaatgc gcgatcaacg gttcgaatgg ttctgcataa      4260
     atgcattacc tgtttccgaa gcaagccaac tactttggaa caacagatgg gtgatcttcc      4320
     tagctaccgt gtaacagctg ctcctacctt tcaacgagtt gggcttgact ttgctgggcc      4380
     aattatgctg aaatccggta tacgtcgtgt tgcggcaata aagggataca tatgtgtatt      4440
     cgtgtgtatg gtgactaagg cgatccattt ggaagcagtg gaggacttat caactggtgc      4500
     ctttctctca gctttgagac gatttgtatc aagaagagga atacctgaag aaatcttcag      4560
     tgataatgcg acaaattttg tcggagcaaa aaatgaacta cgagagctgt atgagatgtt      4620
     taggaaggag gcgacaggcc aaggcatttt ccagttttgc caagaaaagg agatcgtatg      4680
     gaaaatgata ccccctggtg cccctcactt tggaggaatc tgggaggcag gggtcaagag      4740
     tgttaagagt gtactgaaga agatttataa atctgcatct ctaacaataa ctgattttag      4800
     cacgcttcta tgccaaattg aagccatctt aaactcaagg ccattgtatg ctcactcaaa      4860
     tgatcctaac gatttggaat gccttactcc agctcatttt acaattgatc gtcccttgat      4920
     tggagttgca gaaccatcat atttagatat gcctgaaggt cgcttgaata aatggcagag      4980
     aatccaacaa ctgcggcagc aattctggaa tagatggcaa agggagtatt tgtgcgaact      5040
     gcaaactaga tacaagtgga ccaaaataag ggacaacgta aaggagggag cattggttct      5100
     aataaaggag gataatacgc ccccgcaatt gtggaagctg ggacgcattg caagggtgtt      5160
     cccgggcgag gacggattga tccgggtagt ggatgtgaag acaaggagtg gtgagtttaa      5220
     acgtcctgtt cataaattag ctcttcttcc agttatagat ccgtagcatc aacctggccg      5280
     ggagga                                                                 5286
//
ID   BEL6-LTR_AG repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL6-LTR_AG is a long terminal repeat of the BEL6_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL6-I_AG; BEL6-LTR_AG; BEL6_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-487
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL6_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 72-72 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL6-LTR_AG flanks an internal portion of BEL6_AG (deposited as
CC   BEL6-I_AG).
XX
SQ   Sequence 487 BP; 133 A; 90 C; 167 G; 97 T; 0 other;
     tgttccattt cgatggaacg agcgagatgc gcggtctaag gaacgggcga gaatggcggt        60
     ctgaggaagg agagagaggt gcggggtgag gagcgaacgg aaagctgtcc gagtggcatc       120
     tgttttggcg acaattgtct ggaacggcgg cacccgcaat tgttgttcga tctcatcgac       180
     accggccaga attccgcgaa acccaccgta gaatgcaagc gggcggcttg tgtggtcgga       240
     cggaccagag aagcgaggca agcgagttgc ggctgttcgc cggaccacgt taagggggaa       300
     cagagaggga atgaagagat aaggagagag tgagagaaga gagggaatta tgaaatttat       360
     ttgtgaccaa gtggagtggg tcagtctgat gaaaaccgcg aatgagttaa gtcgcaacca       420
     ataaagttgt gcgtacagga ttaccgtgtt cagtacattg cgttaggtta tccgctgaga       480
     tatcaca                                                                 487
//
ID   BEL7-I_AG   repbase;    DNA;    INV; 2613 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL7-I_AG is an internal portion of the BEL7_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL7-I_AG; BEL7-LTR_AG; BEL7_AG; Bel clade; PHD domain;
KW   peptidase A16.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2613
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL7_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 43-43 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL7_AG is a young nonautonomous family of Bel/Pao-like LTR
CC   retrotransposons.
CC   BEL7-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL7-LTR_AG
CC   LTRs. The BEL7-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 11 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes (pos. 393-2552) a 720-aa BEL7_AGp
CC   protein composed of the PHD and peptidase A16 domains (pos. 18-62
CC   and 111-260, respectively).
CC   The reverse transcriptase and integrase domains are not present;
CC   therefore, this family is a nonautonomous one.
XX
FH   Key           Location/Qualifiers
FT   CDS           393..2552
FT                 /product="BEL7_AGp"
FT                 /translation="MTTKRNLTPFVDNDNGSCRLCSRIDDPNMVQCDECDR
FT                 WFHMACAKLSRLPKADEPFLCIKCTKDYAKIKAPASTGSDQNTAIAALIEA
FT                 LKGSSLDTNTYLKRLTFDQLPDFDGKAKEWLKFKRAYEETTKQAKYTNVEN
FT                 MTRLQHALKGEAYKCVHRLFLEPDNVPEIITKLEEQFGRAELVYDELLKDV
FT                 QNIRVENQHKIPDLSDAIQDMITNIKAINMPMYLQDHRLVNELACKLPTDR
FT                 HLKWIEYKSTNIKPGVLPSLEDFGKWLLPQAKVLKELPKRPERPKHSMNVH
FT                 QSSAHNTKRPFNHNHFGNAQNNSPATNTYARNAIDYTAQNCTAARERGPHP
FT                 CEETHHRLHFTADAEENCHQEQKILYQIVPVVLRNEDKTLKTFALLDSGSS
FT                 FTLIEEETANQLQLEGPTEPITMTWTQNLSIREKESRRVSCLVKGEKEKKE
FT                 RVLEKMRTVKNLQLPRQSINCNVLREKCPHLRGIDISDYESARPTILIGLD
FT                 HSHLLIPLGRKMGRSDEPMAIKTKLGWTVFGMNVKGHEAPHNQPMIHYDAD
FT                 STMISKEIDRGKEIIQKPFVETVPNRAWSEDQRIAEPDEEDRGISIPVLHH
FT                 HEAVVPDSSMAPLPLCGTHPHNPSPLHTGVDHLEPPDITTQRFVEREVRQP
FT                 CPGESAAVLMEMRINPQPYVHPPLTNEEDEILSRRGIGSLTTKTLRHRGRP
FT                 HRRRALLRPAIGLASNAGSQ"
XX
SQ   Sequence 2613 BP; 818 A; 650 C; 606 G; 539 T; 0 other;
     catttgtatg gtagagagat ttgcccgtgg tatgaaagct tccgcaaatt ctctagcctt        60
     ctacattctc accgaagaga aattgcttcg ctcctagacg aacctatcct cgctccagag       120
     gaagcactca cactaggagg aagacagcat cgcttccgat aggattgctt ccgctctcca       180
     cctacgcttt tgcactcacg catacggctc cactaacacg tgtgcagctc cagcgagctg       240
     cgtatgcgat agcgtgagag agcactacga gagagctcca agggagagcc ctttgcgcac       300
     cgttgaacca gtgcgacatc gcacacccac accactgata aaaatctgtg cactatacac       360
     gcacacgaac tcatcggcac attagctacg tcatgactac gaaaagaaac cttaccccgt       420
     tcgtcgataa cgacaatggt agctgccgct tatgcagccg gattgatgat cccaatatgg       480
     tccaatgcga cgaatgcgat cgctggttcc atatggcatg cgccaaactg agccggctgc       540
     ctaaagcgga cgaaccattc ttgtgtatta aatgcacaaa agactatgct aagattaagg       600
     ctccagcgtc gactggctca gaccaaaaca cggcaattgc agccctaatc gaagcgctta       660
     aaggtagcag cttagataca aacacatatc tcaaacgctt gacctttgat cagctacctg       720
     atttcgatgg caaggccaaa gaatggttga aattcaagcg tgcgtatgag gaaacgacta       780
     agcaggctaa atatacaaat gttgaaaaca tgacccggct tcaacacgcc cttaagggag       840
     aggcgtataa atgcgtgcac cgtctatttc tcgagccaga taacgtgccg gaaataatta       900
     cgaagctcga agagcaattc ggcagagcag aactcgtgta cgacgagctg cttaaagacg       960
     tgcaaaacat acgtgttgaa aatcagcaca aaatacctga tttgtccgac gcgattcagg      1020
     acatgatcac taacataaag gcaataaata tgcctatgta tttacaagac catcgcctcg      1080
     taaatgagtt ggcttgtaaa ctgcctactg ataggcatct aaaatggatc gaatataaat      1140
     ccaccaatat caaaccgggt gttcttccat cgctggaaga ttttggcaaa tggttgctgc      1200
     ctcaagcaaa ggtacttaaa gaattgccaa aacggccaga aaggccaaaa cactcgatga      1260
     acgttcacca gtcttcagcg cacaacacaa aaagaccgtt caatcacaac cactttggta      1320
     acgcacaaaa caattcaccg gccactaaca catacgcaag aaatgcaata gattacaccg      1380
     cacagaattg cacagccgca cgagaacgcg gcccacatcc atgcgaagaa acgcatcacc      1440
     gtttgcactt cacagccgat gcggaggaga attgtcatca agaacaaaaa atactttacc      1500
     aaattgttcc ggtcgtgtta cgcaacgaag ataaaacgct gaaaacattt gcattgttag      1560
     attcagggtc atcatttacg ttgatcgagg aagaaacagc taatcagctt cagttagaag      1620
     ggccgactga gccgattacg atgacgtgga cgcagaattt gtccatacga gagaaagaaa      1680
     gtaggagagt aagttgccta gtgaaaggag agaaggagaa aaaagaacgg gtcttggaaa      1740
     aaatgagaac cgtgaagaat ctccagctcc cgaggcaatc aatcaattgc aacgttctca      1800
     gagagaaatg tcctcatctg agaggaattg acatcagcga ttacgagagc gcaaggccaa      1860
     ctatactaat tggtctcgat catagccatc tactaatacc actagggcgc aaaatgggcc      1920
     gaagcgacga gccaatggca atcaagacca agctgggttg gactgtcttc gggatgaacg      1980
     tgaaaggaca cgaagcgcct cataatcagc cgatgatcca ctacgatgca gatagtacga      2040
     tgatatcaaa agagatcgat cgtggaaagg aaataatcca gaaaccgttc gtggaaacgg      2100
     taccgaatcg agcttggtcc gaggaccagc gtatcgcgga accagatgaa gaagatcgcg      2160
     gtatatcgat ccccgtactt caccatcatg aagctgtggt tccagattct tctatggcac      2220
     ccttgccatt gtgtggaaca catccccaca acccctcacc actacacacc ggtgtagatc      2280
     atcttgagcc ccctgacatc accacgcaac gatttgtcga gagggaagtg cgacaaccct      2340
     gcccaggcga atcggcagcg gttctgatgg agatgaggat caacccacaa ccatatgtac      2400
     atccaccgct taccaacgag gaagacgaga tcctgtcgag acgaggaatt ggctccctga      2460
     ctacaaagac tcttcgacac agggggaggc cccaccgacg gagggctttg ctgcggcctg      2520
     cgattgggct agcgagcaac gcaggcagcc agtgaaataa tcgctcactt ttttattttc      2580
     gtaattcacg agaatgaatt acgaggggaa gga                                   2613
//
ID   BEL7-LTR_AG repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL7-LTR_AG is a long terminal repeat of the BEL7_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL7-I_AG; BEL7-LTR_AG; BEL7_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-503
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL7_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 44-44 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL7-LTR_AG flank an internal portion of BEL7_AG (deposited as
CC   BEL7-I_AG).
XX
SQ   Sequence 503 BP; 143 A; 116 C; 109 G; 135 T; 0 other;
     tgttacgttc gcgattatta aattcgtaac ggacgtgtca aattgtaaat tcgcgtggtg        60
     cgcgatcacc ttaatctaga aaccgggtac gctacgtgta aaagcggaat aaaaatgcgt       120
     cacaaagact aacatgcggc actcacgcgt acgtacactt atgtgctaat tatcctcgga       180
     aaggatacac taacacccta aaaattgtat gggcttccgg gggtataaaa gggaccgaac       240
     ttttaataaa caaaccattc ggattttgca actctaagaa acctcgtctt ttttaatttt       300
     gcatattcgg atcaagaaag aaatctctca tccctcttca cccccttctg cggcataggc       360
     tcctcaaatt acttgagaga gcaactagcg ggaaggttta ttattggtgt cgaacggttg       420
     agaagatcgc tgttacccga gcgggtttga tttacaaggc cgcatccttc gcgtggccca       480
     cagatccgtt cgccgtcgta aca                                               503
//
ID   BEL8-I_AG   repbase;    DNA;    INV; 5419 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL8-I_AG is an internal portion of the BEL8_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL8-I_AG; BEL8-LTR_AG; BEL8_AG; Bel clade; RING finger;
KW   integrase; peptidase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5419
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL8_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 45-45 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL8_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL8-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL8-LTR_AG
CC   LTRs. The BEL8-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 12 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1742-aa BEL8_AGp Bel-like
CC   protein.
CC   BEL8_AGp is composed of the putative peptidase (pos. 125-261),
CC   RING
CC   Zn-finger (pos. 320-389), reverse transcriptase and integrase
CC   (pos.
CC   1427-1596) domains.
CC   BEL8_AGp
CC   MPAQPLILSSRRTILIAILARYEEFLQNYQPDRDSIEVETRMAKFDQICKDLENLQQQLEDSATTAEEMT
CC   HNAALREDFERRLIRVQSALKAKYREIPRSEVSQQGAGRNPLQGIKLPTIALPEFDGDYMQWLTFRDTFE
CC   CLIHDNVDLPPIQKFHYLRAALKGEAAQVIEAITISASSYELAWKTLAERYSNEYLLKKRHLQAMFGITP
CC   AKRESATTLHQLVDEFERHKKTLNHLGEKTDGWSSILEHLLCTKLPSNTLRDWEEFASTNDNPSYDSLIA
CC   FLHRRMRVLETLLVNKPEPSPIETPIPPRRTIFPRTASFATTDRDVNKCPLCNMPHTITKCQRFNAMNPA
CC   QRYRKVLDARLCLNCLRDNHRARDCSSQYKCRHCNLAHHTMIHTESTPSTSSTTFPMLAAQDEPSHTTHA
CC   TDDHTASIQRSYAAAIKQSPSQILLQTALLNVTDAHGILHPVRALLDSASQPNLMSNRLAQRLALKGSTV
CC   NITLKGAGLSTRTVRRSVRAQIASRVEHFDLDVDFLIVDKVIADLPAHDVSTRGWNIPSEFVLADPQFDK
CC   SAPIDLILGARHYASFFTNVKSHELAPNLPTMLNSVFGWVMIGPTSPQNPASPTDCTAASTIVCMASLEE
CC   SLERFWKLExLSVNDSYSPDERRCETLYKETTQRDESGRYIVRLPKQTDFTEKLGLSKTTALRRFELLER
CC   RLERNPQLKEDYHAFMKEYLELGHMSLMNKDSGDERAYYLPHHPVFKASSTTTKVRVVFDGSAKTSTGYS
CC   LNDILCVGPIVQDELLDIVLRFRTYQIALVGDIAKMYRQILLHSDDRRLVRIFFRFSPQAPIQVYELNTV
CC   TYGLAPSSFLATRTLIQLADDEGTEYALAPAALKRNFYVDDFIGGANNVREAVQLRKELSALLAKGGFEL
CC   RKWTSNNLSVLSGLSTEYIGTHSSLHFIPNETVKALGISWKPESDELCFESNTEADEATSTKRSILSSIA
CC   KMYDPLGLIAPVIVRAKMLMQELWLLKSGWDEPVPNHICKKWKAIQSDWKTLSEYRTNRYALLPDATVEF
CC   HTFTDASEAAYGACVYARCENAAGEVRISLLASKSRVAPLKRVTLPRLELSAAVLGAHLHHRVKEAMQIV
CC   CAESFFWSDSTVTLKWIASPPNSWKTFVANRVAEVQHYSHPRQWRHVPGTSNPADLVSRGMSAAHFTQNQ
CC   LWNNGPDWLVQPSSHWPSSDPEPSDEADLETRQVSAALVCTQTHPWFGISSSFTRMVRIIAYCIRFVRNT
CC   KQKARSQRPIPHTNASKTITPKYVDAAKTVLCRLAQQDAFSAEIKQLKKGEALMKQSPLRKLTPFLDTEE
CC   VIRVGGRLNLSQLPYQSKHPAVLPKNHKFTRLLAEDYHEEMKHASGRLLLSRIRELYWPLDGRRLVKSIA
CC   RNCFRCIRQDPALARQPVGQLPPSRITPSRPFSVTGVDYAGPFYLKPAHRKAAATKSYLCVFVCFATKAV
CC   HLELVGDLTTAGFLAALRRFTSRRGLPAHIHSDNGKNFEGAERELKELFELFNDEQHRNTVATRCADRGI
CC   TWHFNPPKAPHFGGLWEAAVKTAKRHLYRHLGNTRLSYEGYCTVLHQIEAAMNSRPLLPLSDDPNELAAL
CC   TPAHFLIGTSMFAVPEPDYTQLKSCTLDDLQKWQLLVQRFWKHWATEYLQEMQKCYASGGSNNSNILPGR
CC   LVILMDESLPTTRWPLARIVKIHPGEDKIVRVVTLKTAKGIITRPITKICVLPLRTDSENHV.
XX
SQ   Sequence 5419 BP; 1453 A; 1419 C; 1277 G; 1265 T; 5 other;
     ttggtgccgt gaccaggatt gtgccgatak cctgaatatt cgcaattttt tcgataaagt        60
     gctaaacacc tttgcctttc actgcccgac cgttacactg cactttacac tacactcgcg       120
     tacacgataa tcgcagtttt agtaagatgc cagctcaacc gcttattttg tcgtcgagac       180
     gaacgatttt gattgccatt ttggcccgtt acgaagagtt tcttcaaaac taccagcccg       240
     atagggattc tatcgaggtg gaaactcgta tggccaaatt tgaccaaata tgcaaggatt       300
     tggagaacct tcaacagcag ctggaggaca gtgcaaccac tgctgaagag atgacacaca       360
     atgccgccct tagggaggat tttgaacggc gcttgattcg cgttcaatcg gcattgaaag       420
     cgaaatatag agaaattccg cgcagcgaag tgtcgcagca aggagccggt aggaacccgc       480
     tacaaggcat aaaactgccc accatcgctc tgccggagtt tgacggcgat tatatgcaat       540
     ggctgacctt tagggatacc tttgagtgtt tgattcacga taatgttgat ttgccgccaa       600
     tacaaaaatt ccattatcta cgcgcagccc taaaaggtga agcagcgcaa gtgatcgaag       660
     ccattacaat aagcgcctcc agctatgaat tagcttggaa aacactcgct gagcgatatt       720
     cgaatgaata tctgctgaaa aaacgccact tgcaagcgat gttcggcatc acaccagcga       780
     agagggaaag tgcgacaacc ctgcaccagt tagtggacga gttcgagcgt cacaaaaaaa       840
     ccctaaatca cttgggagag aaaactgacg gctggagcag catattagag catttacttt       900
     gcacaaaatt gccctctaac acattgcgcg attgggaaga atttgcttcg accaatgaca       960
     atccgagcta cgattcgttg attgcctttt tgcaccgccg tatgcgcgta ctcgagacgc      1020
     tattagtaaa caaacccgaa ccatcaccta tagaaacacc gataccacca agacgcacca      1080
     tttttccgcg cactgctagt tttgctacca ctgaccgcga tgttaataaa tgcccgttgt      1140
     gcaatatgcc gcacaccata acaaaatgcc agcgatttaa tgccatgaat cctgcccagc      1200
     ggtaccgtaa ggtacttgat gcccgcttgt gtttgaattg tctgcgagac aatcaccgtg      1260
     cccgcgattg ctcgtcacag tacaagtgtc gtcattgcaa cttggcgcat cacacaatga      1320
     ttcacactga aagcactccc agcacatctt ccactacatt tccaatgcta gctgcgcaag      1380
     atgaaccttc acacacaaca cacgccactg atgatcacac ggctagcata caacgcagct      1440
     acgcagctgc aataaaacaa tcaccttcac aaatattatt acaaactgca cttctaaatg      1500
     taaccgatgc acacggcatc ctgcatcctg tgcgtgcact cttagacagc gcatcacagc      1560
     ccaatttgat gagcaatcgc cttgctcaga ggttggcttt gaaaggtagc acggttaaca      1620
     taaccctcaa aggagcagga ctatccacca gaacggtgag gaggtcggtt cgagctcaaa      1680
     ttgcttcacg tgttgaacac tttgacttgg atgtcgattt tctgatagta gacaaggtga      1740
     tcgctgatct gccggcgcat gatgtttcca ctcgcggctg gaacattcct tcggaatttg      1800
     ttttggctga cccgcagttc gataaatcag ccccgattga tctcatcctt ggtgcccgtc      1860
     attacgcttc cttctttacg aacgtaaaat cgcacgagct tgctccgaac cttccaacta      1920
     tgctgaacag cgtgtttggg tgggtcatga ttggtcccac ctctcctcag aatcctgcat      1980
     ctccgaccga ttgcaccgcc gcgtccacaa tcgtctgcat ggcatccctg gaggagtctc      2040
     tcgaacgctt ttggaagctg gaagrgttaa gcgtcaatga ttcgtactca cctgatgagc      2100
     ggcgatgcga aacrttgtat aaagaaacca ctcagcgcga cgagtcgggt cgatatattg      2160
     tacgattgcc caaacagacc gacttcacgg aaaagcttgg cctgtctaaa actaccgctt      2220
     tgagacgctt cgagctgctg gagaggaggc tagaacgcaa cccacagctc aaggaagact      2280
     atcatgcctt catgaaggag tatttggagc tggggcacat gtcgctcatg aacaaagata      2340
     gtggggatga acgggcgtac tacctaccgc accatcccgt atttaaagcc tccagtacca      2400
     ccacgaaagt aagggtcgtg ttcgacggat ctgcaaaaac aagcaccggt tattccttga      2460
     atgacattct atgtgttggt ccaatcgtgc aggacgagct gcttgatatt gtgttgcgat      2520
     tccgcaccta ccaaatagca cttgtgggag atatagctaa aatgtaccga caaataytgc      2580
     tgcattctga tgatcgtcga ttggtgcgca tattctttcg attttcgccg caagctccga      2640
     tccaagtata tgagctcaac accgttacat acggactagc accttcctcg tttctggcta      2700
     cacgcacact tatccaacta gcagatgatg aagggactga gtatgcgctt gcacctgcag      2760
     ccctgaaacg aaacttttac gtggacgact tcattggtgg tgccaataac gttcgcgaag      2820
     ctgttcagct gcgtaaggag ttatcagcgc tacttgccaa aggtgggttt gagttgcgca      2880
     agtggacatc aaacaatctg agcgtgctct ccggcttaag caccgagtat atcggcacac      2940
     actcatcgct gcattttata cccaacgaga cggtcaaagc actcggcatc tcgtggaagc      3000
     ctgaatcgga tgagctgtgt tttgaatcca acactgaggc tgatgaagcc acgtcgacca      3060
     agcgatctat tttgtcgagc attgccaaaa tgtacgatcc gctcggattg atagcaccgg      3120
     tgatcgtgcg tgctaagatg ctgatgcagg agctatggct actcaaatcc ggctgggatg      3180
     aacctgttcc taatcacatc tgtaaaaaat ggaaggcgat tcagagcgac tggaaaacgt      3240
     tatccgagta caggactaac cgttacgctc tcttaccaga tgcaacagta gaatttcaca      3300
     catttaccga tgcttckgag gccgcctacg gagcatgtgt ctacgctcgt tgtgaaaacg      3360
     cggcgggaga agtccgcatc agcctattag cttcgaagtc tcgagtggca ccactgaagc      3420
     gcgtcacgtt gccgaggctt gaactaagcg cagctgtcct gggcgcccat ctgcatcatc      3480
     gcgtcaagga ggcaatgcag atcgtgtgcg ccgaatcgtt tttctggtcc gactcaacag      3540
     tgacgctaaa atggattgcg tcacctccca actcctggaa gacgttcgtg gcaaatcgag      3600
     tagctgaggt gcaacactac tctcatccaa ggcaatggag gcacgttcct ggcacatcca      3660
     atcctgctga cttggtttcc cgaggcatgt cggcagcaca cttcacgcag aatcagcttt      3720
     ggaataacgg tccagattgg cttgtgcaac cttcgtccca ttggcccagc tcagatccag      3780
     aaccaagcga tgaggcggac ctagaaacac gccaggtgag tgccgcttta gtttgtacac      3840
     aaactcatcc atggtttggc atttcttcat ccttcaccag aatggtacgc atcattgcat      3900
     actgcatacg gtttgtgcgc aacaccaagc agaaggcgcg atcacagcga ccgataccgc      3960
     acaccaatgc atccaagacg atcacgccca agtacgtgga tgctgcaaaa actgtgcttt      4020
     gcagactagc ccagcaagat gcattttccg cggaaatcaa gcagctaaaa aagggagaag      4080
     cattgatgaa acaatcacct ttacgaaaac ttaccccatt cctggataca gaagaagtaa      4140
     tacgggtggg aggacgattg aacttgtcgc aactaccgta tcagtccaag catccagctg      4200
     ttctaccgaa gaaccacaaa ttcacccgtc tacttgcgga agattatcat gaagagatga      4260
     aacatgctag tggaaggcta ttgctatccc gcattagaga actgtattgg ccactggacg      4320
     gacgtcgctt ggtaaaaagc attgcaagaa actgcttccg ctgtattcgg caagatcccg      4380
     cactcgcccg gcagccggtt ggccagcttc caccatcccg catcacaccg agccgacctt      4440
     tttctgtaac cggagtggat tacgccggtc cattctactt gaagccagcg caccggaagg      4500
     cagcagctac taagagctat ctgtgcgttt tcgtgtgttt cgctacgaaa gctgtgcact      4560
     tggaactcgt aggagacctc acaacggcgg gattcttagc agcgctacgc cgattcacat      4620
     cacgacgcgg attgccagcc cacatccatt ctgataatgg gaaaaacttc gaaggcgcag      4680
     aacgtgaact gaaggagctt tttgagctgt tcaacgacga acaacaccgc aacaccgtgg      4740
     ctactagatg cgctgaccgg ggaatcactt ggcatttcaa cccaccaaag gctccacact      4800
     tcggcggatt atgggaagca gcagtaaaga cggcgaagcg acacctctat cgtcacctgg      4860
     gcaatacgcg gctgtcgtac gaaggctact gcactgtgct ccaccaaatc gaagcagcga      4920
     tgaattcccg tccgctgttg cctttgtccg acgatcccaa cgagctagct gcactcacac      4980
     cggcacactt ccttattggc acatcgatgt tcgccgtgcc tgaaccggac tacacccagc      5040
     tgaaatcctg cacgctagat gatcttcaga agtggcagct tttggttcag cgtttttgga      5100
     agcattgggc cactgagtat ctacaagaaa tgcagaaatg ttatgcaagt ggtggcagca      5160
     acaacagcaa catacttccc ggcaggttag tgatcctcat ggacgaatcg ttacccacca      5220
     ctcgttggcc tctcgcgcgt atcgttaaaa tccatcccgg tgaagacaag atagtacgcg      5280
     tcgttacgct taagacagct aagggaataa ttacgcgacc gatcacgaaa atatgcgttt      5340
     taccgctcag aactgatagc gaaaaccacg tgtagtctag gaagcaactt tttgttgaca      5400
     ttcgtcaagg tggggagga                                                   5419
//
ID   BEL8-LTR_AG repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL8-LTR_AG is a long terminal repeat of the BEL8_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL8-I_AG; BEL8-LTR_AG; BEL8_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-228
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL8_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 46-46 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL8-LTR_AG flank an internal portion of BEL8_AG (deposited as
CC   BEL8-I_AG).
XX
SQ   Sequence 228 BP; 76 A; 53 C; 43 G; 56 T; 0 other;
     tgttcgagca gctacgcgaa tcgtgcagat ttgaactgcg gatcggatca catccgcgcc        60
     cgttgatgta cacatctcta tcgatcataa attaataaat agagggcgaa aaggcttttt       120
     ccctctcttc atcaccagca atttcttaca acggcttcgg taattattag cagcaaaaac       180
     caaagaaaga aaaggaaact ttatccgaaa actattcgcg acgaaaca                    228
//
ID   BEL9-I_AG   repbase;    DNA;    INV; 5691 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL9-I_AG is an internal portion of the BEL9_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL9-I_AG; BEL9-LTR_AG; BEL9_AG; Bel clade; integrase; peptidase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5691
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL9_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 47-47 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL9_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL9-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL9-LTR_AG
CC   LTRs. The BEL9-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 18 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1746-aa BEL9_AGp Bel-like
CC   protein
CC   (pos. 234-5471).
CC   BEL9_AGp is composed of the peptidase (pos. 131-263), reverse
CC   transcriptase (pos. 760-900) and integrase (pos. 1427-1596)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           234..5471
FT                 /product="BEL9_AGp"
FT                 /translation="MDKKIKAVQLKKRIALENIKSLERFQAKYSSDDAKQI
FT                 PEVLEDLAKHKEEFFTAVSKLEELEDKDEAVEASIMERIDIEERCRKLKSF
FT                 LRERQPKEEGSLNDTTGLASSTLAFGRPHAPNLRLPKIELPTFDGDHTKWL
FT                 SFRDRFIAMIDASAELPSIAKLQYLLSSLKGDAAVPFEHTPLTADNYSVTW
FT                 AALLKRYDNSRLLIREYYRKLHYLPGVQLVCVDKLTHLVDEFTRFVNGLKK
FT                 LNEPVDSWDTPLSNMLLMKLDRETLLAWEKHSVHFTTDKYKDVIDFVQDRI
FT                 QILKSTNNFVKDQAASGIKVAGLIRQPGQRRFIANAATSRSAPAASTAHTQ
FT                 QPKCPLECSEDHTLRNCPVFIAKEVQQRRDVVASKRLCWNCLSSNHQVRAC
FT                 KSDYSCRTCRERHHTLLHHSPPYAPPATVTLSAQSNEDNVFLATANIQIKD
FT                 DYGNTHEARALLDSGSMSNFIAEEFARKLLTSRKRVNVAVSGIGNAVQQIK
FT                 GSIVATVQSKTQPFATEMTFLVLDTPSANIPTSPTDVSSWKMPDVALADST
FT                 FNSPGQIDIVIGGDTFWELHTGRKRSIGRGKPWLVETHFGWVVTGNTHHSS
FT                 VGPRLCHLSAYDTPLEETMQRFWESETIAEDPVLSVEENACEKHFAATTVR
FT                 NSSGRYVVSLPFNSNPNIVLGESKEIADRRLRCIERRLNTNAKMKEEYVKF
FT                 MKEYEHLGHMKRLTSPANDSVEHYYLPHHAVIKESSTTTKVRVVFDASCKT
FT                 SSGYSLNDKLLVGPVVQEDLLSIILRFRSRAIALTADVEKMYRQILHSPHD
FT                 RNYLRIRYREHPADPISTFELQTVTYGTASAPFLATRTLKQIALDHKEEYP
FT                 LAMNAVMNDFYVDDLLTGTDDLSEAIVIQRQISDMLNSAGFTLKKWASNRS
FT                 EALKNVPSEDVAVQLSHEWKSSKQVSTLGIVWEPATDTLRFRIEIPPTTPS
FT                 MTKRLILSYIAKIFDPLGLLGPTIIIAKMFMQQLWALKIHGKAYDWDSELP
FT                 SHLQHEWSKFHSTLSSLRNLTVPRYISQCTATSLQIHIFADASQLAYGACC
FT                 YIRAESMEGVTVQLLTAKSKVVALSNSHSIARLELCAARLATLLYEKVQQS
FT                 LKISATTICWTDSMTVLHWLNSAPNRWKPFVANRVAKIQHTAGIQCWKHVP
FT                 GSDNPQADDISRGLTPEKLLVCERWWHGPHWLARNSEEWPQNTPSPSEDES
FT                 AEEEKLSSRVASTALICEFRNSLFSRFSIYHKLQRVVAHCLRFIQNAKRRV
FT                 GNKVHAKDIPPLTVDELKAAELKLCYLSQQDTFSEEIQHLQKGKEIPKNSK
FT                 LKWISPFIDTQGILRIGGRLSNAHLSESEKHPVILSSKHPLSALLAVSIHL
FT                 SKLHAAPQLLLTTLRQSFWIIGGRNLCKSVYHSCHACFKAKPTLIKQSIAD
FT                 LPTSRVTPTRPFSVCGVDYCGPIYIKQTIRNRSPIKAYIAIFVCFSTRAVH
FT                 IELVGDLTSTAFINALRRLIARRGQISELHSDNATTFKGAAHELNRVYKML
FT                 KSDEHDRAAIFDWCAMNHMKWKFIPPRAPHFGGLWEAAVKAAKKHIVRTIG
FT                 TTSITQESMLTLLAQVEQCLNSRPITPLSDEPSDLEPLTPGHFLVGGNLQA
FT                 VPIIDYTETPSNYLREYQLVQKHLQTIWARWYPEYLQQLQARAKYCNGKSA
FT                 VLKENTLVIIKEDNVHPTSWPMGRIVAVHPGKDDVVRVVTLRTASGKQIVR
FT                 AANRLAVLPNPDVISNLEQKETTGTE"
XX
SQ   Sequence 5691 BP; 1615 A; 1392 C; 1335 G; 1349 T; 0 other;
     tttttggtcc ttcgaaccgg atcgtgatat acggagaaga aataagtttc attctgcatc        60
     aagagtggaa ttcggtattc gtcgtcaagt gtgcaagtca ttccgtgaca attcccgcca       120
     tcgcatatcg ccccgcatca agggcaacgg tcggttacac gccatcattt tgaatttcgc       180
     gccatcgctt tgttcgttat tttcgtgtga tatcgcagta ttttctttgt gcaatggata       240
     agaaaattaa agcagtgcaa ctgaaaaaga ggatcgccct ggagaacata aaatcgctgg       300
     aacggttcca ggcgaaatat tcgagtgatg atgccaagca gattccggag gtgttagaag       360
     atctggcgaa acataaggaa gagtttttca ccgcagtttc gaaactggaa gagcttgaag       420
     ataaagacga agcggtcgaa gccagcataa tggaacggat cgacattgaa gaacgctgtc       480
     gcaagctaaa atcatttcta cgggaaagac agccaaagga agaaggttcg ctcaacgata       540
     caacgggctt ggcttcctca acgcttgcat tcggtcgacc ccacgcgcca aatttacgtt       600
     tgcccaaaat cgaacttcca acatttgacg gagatcacac aaaatggctt tctttccgag       660
     atcgcttcat cgcaatgatc gacgcttcag ccgagcttcc atctatcgcg aagctacaat       720
     acttactgtc atcgttgaag ggggacgcgg cggtaccctt cgagcataca cctttaacgg       780
     cggacaacta ttcggttacc tgggcggcgc ttcttaaacg gtacgacaat tctcgtcttt       840
     tgattcgcga atactatcgc aaattgcact accttccggg agtgcaattg gtgtgcgttg       900
     acaagctcac gcacctggtg gatgaattca cccgcttcgt caacgggttg aaaaagctga       960
     acgaaccggt tgactcgtgg gacacacccc tctcaaacat gctgctgatg aagttggatc      1020
     gagagacatt gttggcttgg gagaaacatt ccgtgcactt cacgacggac aaatataagg      1080
     atgtgatcga cttcgtgcaa gatcgtatcc aaatcttgaa atcgaccaac aacttcgtga      1140
     aggatcaagc agctagtggt atcaaggtgg ccggtctcat tcgtcaacca gggcaacgga      1200
     gattcatcgc gaatgcagct acatctcgct cggctcctgc tgcatcgact gcgcacaccc      1260
     aacagccaaa gtgtccattg gagtgttccg aagaccacac actgcgcaac tgtccagtgt      1320
     tcatcgccaa ggaggtccaa cagcgacggg acgtcgtcgc atcgaagcgg ctgtgctgga      1380
     actgtttgag cagcaatcat caggttagag cgtgcaagtc ggattattcg tgtcgcacgt      1440
     gtcgtgagcg tcatcacaca cttctacatc attcaccacc ctatgctcca cccgcaacgg      1500
     taacattgtc agctcagtcg aatgaagaca atgtgtttct ggcgacggca aacatccaga      1560
     tcaaggatga ctacgggaac acccatgaag caagggcgtt gttggattcg ggatccatgt      1620
     cgaatttcat cgctgaggag ttcgcacgga aactgctgac gagtcgcaaa agggtcaacg      1680
     tcgctgtatc gggcatcggc aatgcagtac agcagatcaa gggttccatc gtcgctaccg      1740
     ttcagtccaa gacacaaccc ttcgcaacgg agatgacttt cttggttctg gacacgccat      1800
     ccgcaaacat ccctacatca ccaacggacg tctcttcatg gaaaatgccg gacgtggcat      1860
     tggcggacag cacctttaac agtccggggc aaatcgacat cgtcatcgga ggcgatacgt      1920
     tctgggagct ccacaccggt cgcaagcgct ctatcggtag aggcaaaccg tggctggtcg      1980
     aaacccactt tggttgggtt gtcaccggca acactcatca ttcgtcagtc ggtccgcggc      2040
     tgtgccatct atctgcatac gacaccccac tggaggagac catgcagcgg ttctgggaga      2100
     gtgaaaccat agccgaggat cctgtgctat cggttgagga gaatgcttgc gagaagcatt      2160
     tcgcagcaac aactgttcgc aactcaagtg gaaggtatgt cgttagtttg ccatttaact      2220
     ccaaccctaa tatcgtttta ggagagtcga aggaaatagc cgatcgcaga ctgcgttgta      2280
     tcgaacggcg gttgaacacc aatgctaaaa tgaaagaaga gtatgtgaaa tttatgaaag      2340
     aatatgagca tttggggcat atgaagcggc ttaccagtcc tgcaaacgat tcggtagagc      2400
     attactacct cccacatcac gctgtcatta aggaatcaag cacaaccacg aaggtgcgtg      2460
     tcgtgttcga tgcatcctgt aagacttcga gtggttactc attgaacgac aaactcttag      2520
     tgggaccagt cgttcaagaa gatcttttat cgattatcct tcggtttcgt tctcgtgcca      2580
     ttgctctcac tgcagacgta gagaagatgt atcggcaaat tttacatagc cctcatgacc      2640
     gtaactatct gcgcatccgg tacagagaac atcctgcaga tcctatatcg acatttgagc      2700
     tacagacggt tacgtacggc acagcctctg ctccattttt ggcaaccagg accctaaaac      2760
     agattgctct tgaccacaag gaagagtatc ctttggcaat gaacgcggtc atgaacgatt      2820
     tttacgtaga tgatttgcta acgggtaccg atgatttgtc cgaagcaatc gttatacaaa      2880
     ggcaaatctc agacatgcta aattcagctg gtttcacgct gaagaaatgg gcatcgaacc      2940
     gctccgaagc attgaagaac gttccttcag aagatgtggc ggtacaactc tcgcacgagt      3000
     ggaagagctc gaaacaagta tccacactag gcatcgtttg ggaaccggca actgatacac      3060
     tacggtttcg tattgagata ccacctacaa cacccagcat gacgaaaagg ttaattttgt      3120
     catatatcgc caagatattt gatcccctcg ggctactggg cccaacgatc atcatcgcaa      3180
     agatgttcat gcagcaacta tgggctctca agattcatgg aaaggcatat gactgggaca      3240
     gcgagctacc atcgcactta cagcatgaat ggtcgaaatt tcactctaca ttatcttcac      3300
     tacgcaattt gacagtccca cggtacatat cgcaatgcac ggcaacaagt ctgcaaattc      3360
     atatctttgc tgacgcatca caactagcat atggtgcttg ttgctacatt cgggctgaaa      3420
     gcatggaagg agtcaccgtg cagctgctaa cagccaagtc aaaggtcgtt gcgttatcca      3480
     attcacattc catagctcga ttggaattat gtgcagcacg actagccaca cttctttacg      3540
     agaaagtcca gcaatcactg aaaatttctg ctaccaccat ctgttggacc gattccatga      3600
     ctgtccttca ctggctgaat tcagcaccaa atcgatggaa gcccttcgtt gcaaacaggg      3660
     ttgcaaaaat tcagcacacg gctggaatac aatgctggaa gcatgttcca ggctcggaca      3720
     atccccaagc agacgacatt tcgcgaggtt taacgccgga aaagttgcta gtgtgtgagc      3780
     gctggtggca cgggccacat tggttagcac gcaactcgga agaatggcca cagaacacac      3840
     catcaccaag cgaagatgag agcgcagaag aagaaaaact atcgtcacgg gttgcaagca      3900
     cagcattaat ctgcgaattt cgaaacagtt tgttctcacg attttcgatc taccacaaac      3960
     tgcaaagagt tgttgcacat tgtttgcgct ttatacaaaa cgcaaagcgc cgcgtaggaa      4020
     acaaggtcca tgctaaggat atcccaccgc tcactgtaga cgaactcaag gcggcagaac      4080
     tcaagttgtg ttatctttcg caacaagaca ccttttccga ggagatacaa cacctgcaga      4140
     agggcaaaga gattccgaag aactccaaac tgaaatggat ttcccctttc atagatacgc      4200
     aaggtattct gcgcattggt ggccggctca gtaacgcaca tctgtcggaa tcagaaaaac      4260
     acccggtaat attatcatcg aaacatccac tgtccgcact actagctgtt tcgatacact      4320
     tgagtaagct gcatgctgca ccacaactgc ttttaacaac actacgccaa agcttttgga      4380
     taattggcgg tcgcaattta tgcaagtctg tgtaccacag ttgccacgca tgttttaagg      4440
     ccaaacccac acttattaag caaagtatcg ccgatttgcc aacatcacga gtcacaccaa      4500
     caagaccatt ctcagtatgc ggagtagact attgcggacc aatctatata aaacaaacca      4560
     tacgcaacag aagtccgatt aaagcataca tcgccatatt tgtatgtttt tcaacaagag      4620
     cggtacatat cgaactggtt ggcgatttaa catcaacagc atttatcaat gcacttcgtc      4680
     gtttgattgc acgtcgtggt caaatcagtg aactgcattc cgacaatgca accaccttta      4740
     agggagcggc acatgagctg aatcgcgtct acaagatgct aaagagcgac gaacacgatc      4800
     gagctgctat atttgattgg tgcgcgatga atcatatgaa gtggaagttt atcccaccaa      4860
     gagcaccaca ttttggaggt ttatgggagg cggcggtgaa ggcagctaaa aagcatatag      4920
     tcagaacaat aggaacaaca agcatcacac aggagagcat gcttacccta cttgcccagg      4980
     tagagcaatg tttgaattcg cgaccaatta cacctctatc cgatgagccg tcggacttgg      5040
     aaccattgac accgggacac ttcctcgtcg gtggcaatct gcaagcggta ccaatcatcg      5100
     attacaccga gacaccgagc aactatttga gggaatacca gttggtacaa aaacatctgc      5160
     aaaccatttg ggctcgatgg tatccggagt acctgcagca gttacaagct cgagccaaat      5220
     attgcaacgg gaaatcagcg gttctgaaag aaaatacact ggtgattatt aaggaagaca      5280
     atgtacatcc tacctcgtgg ccgatggggc gcatcgttgc agtacaccct ggaaaggacg      5340
     atgttgttcg cgtcgttaca ctgcgcactg cttcagggaa gcaaatcgtc cgcgcagcta      5400
     atcgtctggc ggttttgcct aatccggacg taattagcaa cttagagcag aaggaaacca      5460
     ctggcactga gtaacgcgca gctgcaagcc acgcgacatt gtttacattt cgcactcatg      5520
     gcagaacaag atacacgcaa cacacattca cacatctaca cacacgagca gtatgatagg      5580
     agataagcgt caggttcaag agtcgaactg tttttgaatt cttttttgaa ctcatttttg      5640
     gatttatatt ttgcatgaaa tttaaagaag ttcttctttg gtggccggga a               5691
//
ID   BEL9-LTR_AG repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL9-LTR_AG is a long terminal repeat of the BEL9_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   BEL9-I_AG; BEL9-LTR_AG; BEL9_AG; Bel clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-263
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "BEL9_AG, a nonautonomous family of Bel/Pao-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 48-48 (2003).
XX
DR   [1] (Consensus)
XX
CC   BEL9-LTR_AG flank an internal portion of BEL9_AG (deposited as
CC   BEL9-I_AG).
XX
SQ   Sequence 263 BP; 99 A; 48 C; 39 G; 77 T; 0 other;
     tgttggaatt tggataatta ttttcgaact taaatttgaa ttgtacataa aacaaagcgt        60
     taggaaacta agattaggtt ataaactact cgacgttaga aactgctcga tctacacgaa       120
     ttatgaactg catgaaatat tatatacaaa aaaggacaaa cgaatataca gttgcaaacc       180
     gaccagcgat aaaggtgtac actttcctat tcaaatttcc tccaaatatc acagccagcc       240
     ccttttcgtg aatatatttc aca                                               263
//
ID   BEL_I       repbase;    DNA;    INV; 5404 BP.
XX
AC   U23420;
XX
DT   14-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   BEL_I is an internal portion of BEL retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag; endonuclease;
KW   internal portion; BEL_I; BEL_LTR.
XX
NM   BEL_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5404
RA   Davis S.P. and Judd H.B.;
RT   "Nucleotide sequence of the transposable element, BEL, of
RT   Drosophila melanogaster.";
RL   Drosoph. Inf. Serv 76, 134-136 (1995).
XX
DR   GenBank; U23420; Positions     362    5765.
XX
CC   BEL_I's ORF encodes 1607 aa-long polyprotein that has domains
CC   similar to gag, RT and endonuclease/integrase typical for many
CC   animal retroviruses including MLV, MMTV and SIV.
XX
FH   Key           Location/Qualifiers
FT   CDS           558..5378
FT                 /product="BEL_I_1p"
FT                 /translation="MFIGSIASNSSLTDCQRFHYLKSYLAGDALALVKHIP
FT                 VTNDNYREAWERLEQRYNKQSLIIRSFLNSFMSLPSAINSNIGTVRKIADG
FT                 ADEVIRGLRALNCEERDPWLIFILLSKLDSDTRQAWAQCAESEEKGVTINR
FT                 FLKFLTSRCDTLEAFELTRSTQARRAATTHHADTHPRREEPKCTSCQQNHQ
FT                 LFKCPQFIALDIASRRDFLKSRKLCFNCLSPAHMVGNCTSRHTCRICRRKH
FT                 HTLVHGSSQPIQNGNNIDTASVDSRDRPAVSHAGSTIGHNQPLAREGHRLG
FT                 SETPAENNFTHHTLENIPAAGSQTLLPTILADVIDAWGNTTTCRLLLDTGS
FT                 TITLASESFVQRIGVRRTHARISILGLAANSAGVTRGRAHIKLRSRHSGQT
FT                 VELVSFILTSLTSSLPAQVIDTSSSTWRQICELPLADPTFCTPGAIDVIVG
FT                 SDQLWSLYTGDRKHFGNDFPIALNTVFGWILAGSYSAFDDHPTSAVTHHAD
FT                 LDTMVRSFMEMDSIQPNQALLDASDPTERHFAATHKRSTDGVYVVEYPFKE
FT                 KAPPIDSTLPQAINRFFSLERKFRRYPELKQQYEAFLDDYLQRGHMEKLTS
FT                 AQVEESPDTCFYLPHHAVIKLDSLTTKCRVVFDGSGKDSSGVSLNDRLHIG
FT                 PPIQRDLFGVCLRFRQHQYVLCADVEKMFRGIKVFKPHTNFQRIVWRTTEN
FT                 EPLLHFRLLTVTYGLAPSPFLAVRVLKQLADDHGHEYPAAAHALLHDAYVD
FT                 DIPTGANTFEELMILKDELIALLDKGKFKLRKWSSNSWRLLKSLPEEDRCF
FT                 EPIQLLNKSAADSPVKVLGIQWNPGKDVLYLNLKGCDATISPTKRELLSQL
FT                 SRIYDPLGLVAPVTVLLKLIFQESWTSVLQWDDPIPESLRTRWRALVEDLP
FT                 ALTQCQVPRYIASPFRDVQLHGFADASSHAYGAVVYARVAVGCSFQVTLVA
FT                 AKTRVAPIKPVSIPRLELNAALLLSRLLSIVKTSLTIPLFSTSCWTDSEIV
FT                 LHWLSAPPRRWNTYVCNRTSEILSDFPRSCWNHVRTEDNPADCASRGLHPS
FT                 KLLEHRLWWKGPSWLATPTSEWPPSTSKFSVSSSFDVNTEERAIKPTTLHN
FT                 FPDESIHELLIHKFSTWTRLIRVSSYCHRFIHTLRSHHRNSAPFLTSEELL
FT                 DAQRRLIRHVQQKSFAREYEQLENRRQLNAKSHLIRFSPFLDDYGVMRVGG
FT                 RIEQSTLNYNAKHPILIPKDTPLAGLLVRHFHVSYLHTGVDATFTNLRQQY
FT                 WILGARNLVRKAVFQCKSCFLQRKGTSNQIMGELPIPRVQASRCFQHTGLD
FT                 YAGPIAIKESKGRTPRIGKAWFSIFVCLTTKALHIEVVSELTTQAFIAAFQ
FT                 RFIARRAKPTDLYSDNGTTFHGGKKTLDDMRRLAIQQAKDEELAGFFANEG
FT                 ISWHFIPPSAPHFGGMWEAGVRSIKLHMKRILGSKALTFEELSTVLTQIEA
FT                 ILNSRPLCPTGDNSLDPLTPAHFLTGSPYTALPEPCRLDMQVNRLERWNQL
FT                 QAMVQGFWKRWHMEYLTSLHERTKWHLETENLKIDTLVVLKEPNLPPSKWI
FT                 LGRITAVHAGIDNKVRVVTVKTAHGLYKRPIAKIAVLPLC"
XX
SQ   Sequence 5404 BP; 1411 A; 1400 C; 1218 G; 1375 T; 0 other;
     taaaaattgg tccttcgagc cggataaccg gaagtgcgtt tcgttcgggc atttgatttt        60
     gattattggc cttttggcaa acgataatct atagattcct acatcgtgta gaatcgttcc       120
     cttctttcga ccaccatgcg gagtgtgatt caacaacggg gcttctgcaa aagccaaatt       180
     actcgtgcgc ataataatgc cttaaaattt gttgatgaca ttcactcagt gcaaacaata       240
     gttgtccgcc tggcgcaact acaggaaaat tatttgcggt tcgtacggct ctcggaagag       300
     ctgtatgcat ttcaatcgga agccgattgg gagaaccctg acgaggattt tgacgcatat       360
     gaggacaaac attatgctac acacgctatt ctcagcaata ctttggagga gttgagacgg       420
     gatgtcacct caaacagtat tgatgccaca gttcaagcgc aggcacaccc cagagaagtc       480
     atgtcgattt tcagttcgag agaattaaac ttccgacttt ttctggaaat tatgaggact       540
     ggaaacattt ttcggacatg tttattggat cgattgcttc caattcgagc ctgacggatt       600
     gccaacgatt tcattattta aaatcgtacc ttgccggaga cgcgcttgca ttagttaaac       660
     atattccagt tactaatgac aactatcggg aagcatggga gcggctggaa cagcgatata       720
     acaaacaatc gctaattatt cgatcgttct taaacagttt catgagcctt ccgagtgcta       780
     taaattcaaa tatcggcaca gtgcggaaaa ttgccgatgg tgcagacgaa gttattcgtg       840
     gtctacgagc tcttaattgc gaagagaggg atccctggct aattttcatt ctactttcaa       900
     aattagatag cgatacccgc caagcctggg ctcagtgcgc agaatccgag gaaaaaggtg       960
     tgaccatcaa ccgattcttg aaatttctca catcacgctg cgatacgttg gaggcttttg      1020
     aattaactcg atcaacccaa gctcgacgcg cagctaccac gcaccacgca gacacgcatc      1080
     caagacggga agagccgaag tgcacatcgt gccagcagaa tcaccaactg tttaagtgtc      1140
     ctcaattcat cgcactcgac attgcatctc gccgagactt cctcaaatca agaaagctct      1200
     gtttcaattg cctcagcccg gctcatatgg tgggcaactg tacatcgagg catacttgtc      1260
     ggatctgccg ccgcaagcat catactttgg ttcatggctc gtcgcagcca attcaaaatg      1320
     gcaacaacat tgacacagca agtgttgaca gccgcgatcg accagcagtc tcacatgcgg      1380
     gatctacaat tggccacaat caaccgctag ctcgagaagg tcatcgcttg ggaagcgaga      1440
     ctcccgcgga aaacaacttt acgcatcata ctctggagaa tattccggcg gctggttctc      1500
     agactctgtt gccaaccatc cttgctgacg tcatcgacgc ctggggaaac actacaacct      1560
     gcaggctgct cctggacact ggatctacaa taaccttggc atcggaatca tttgttcagc      1620
     gaataggcgt gcgtcgaacg cacgcacgga tttctattct cggtctcgcc gccaacagcg      1680
     cgggcgttac ccgaggacgc gcacatatca agctgcgctc tcgtcattcg ggccaaactg      1740
     tcgaattggt ctcgttcatt ctcacctcgc tgacgtcatc acttcctgcc caagttattg      1800
     acacctcatc ctctacgtgg aggcaaatct gcgagcttcc tttggcagac ccaacgttct      1860
     gcacacctgg agcaatcgat gtcattgttg gatcggatca actttggtct ctatacacag      1920
     gagatcggaa acactttggt aacgactttc ctatcgctct caatactgta tttggttgga      1980
     ttcttgcagg ctcttactct gcattcgatg atcaccctac ttctgcggtt actcatcacg      2040
     cggacctaga cacgatggtt cgttcattca tggagatgga cagcattcag cctaaccagg      2100
     ctctcctgga cgccagcgat cccacagagc gtcattttgc tgccacacac aagcgctcga      2160
     cggacggggt gtacgtcgtc gagtatccct tcaaggaaaa ggcaccgcct attgattcga      2220
     ccttgccaca ggccatcaat cgcttcttct cgctggaacg caaatttcgt cggtatccag      2280
     aattgaagca gcagtacgaa gctttcctgg acgactactt gcaacgtgga catatggaaa      2340
     aactgacctc ggctcaggtt gaagagtccc cagacacctg cttctatttg ccgcaccacg      2400
     ctgtcatcaa actggacagt ctgactacca aatgtcgtgt agtttttgat ggatcaggaa      2460
     aagacagctc tggagtatcg ctcaatgaca gactacatat tggtccaccg attcaacgcg      2520
     atctttttgg cgtttgtcta cgcttccggc agcaccaata tgttttatgt gcagatgtcg      2580
     aaaagatgtt tcgaggcatt aaagtcttta agccacacac caattttcag cgcattgttt      2640
     ggcgcacgac tgagaatgaa cctctgcttc attttcgcct gctgacggtt acctacggat      2700
     tggcaccgtc accatttctg gctgttcgag ttctaaagca acttgccgac gatcatggcc      2760
     atgaataccc tgcagcagct cacgctcttc tgcacgatgc ctatgtggac gatatcccga      2820
     caggcgccaa cacattcgag gagcttatga ttctcaagga cgagcttata gccctcttgg      2880
     ataagggaaa attcaagcta cgcaaatgga gttctaatag ttggcgtctt ctgaaatcat      2940
     taccagagga agatagatgt tttgaaccta tccagctcct caacaaatca gctgcggatt      3000
     cacctgtcaa agttcttggt atccaatgga accctgggaa ggacgtcctg tatctcaacc      3060
     taaagggatg cgatgcgacc atttctccga cgaaaagaga actcttgtct cagctatcaa      3120
     gaatttatga tccgcttgga ctggtagcgc cggtcacagt tctactcaag ctaatcttcc      3180
     aagaaagctg gacaagtgtc ctgcagtggg acgaccccat acctgaaagt ctacgtacgc      3240
     gctggagagc cttagtagag gatttgccag cacttacgca atgccaagta ccacggtata      3300
     ttgcgtcacc atttcgagat gttcaactac acggattcgc cgacgcatcc tcgcacgcct      3360
     acggtgcggt agtttacgct cgagttgcag ttggatgcag ctttcaagta actctggttg      3420
     ccgccaaaac acgggtggcc ccgatcaagc ccgtatcaat tccacgtttg gagctaaacg      3480
     ctgcgttact tctatctcga ttgctttcta ttgtcaaaac atcactaaca attcctcttt      3540
     tcagcacgag ctgctggaca gattcagaaa ttgtgctaca ctggctttca gctccccctc      3600
     gacggtggaa cacctacgtc tgcaaccgaa cttctgagat attgagcgac tttccccgta      3660
     gctgctggaa ccatgttcgc acggaagaca atcctgcaga ttgtgcttcc cgaggacttc      3720
     atccgtcaaa gcttctggag catcgactgt ggtggaaagg tccgtcttgg ctggccacac      3780
     ccacctctga gtggccacct tctacaagca agttcagcgt atcttcaagt ttcgatgtca      3840
     acaccgaaga acgagccata aagcccacga ctctacataa ctttcctgat gaaagtatac      3900
     acgagttact catccacaaa ttctcaacct ggacgcgtct tataagggta tctagctact      3960
     gtcatcgctt tattcacact cttcgatccc atcataggaa ttcggcacca ttccttacgt      4020
     ctgaagagtt gctggacgca cagcgccgac ttattcgaca tgtgcaacaa aaatcctttg      4080
     ccagagaata tgagcagcta gagaatcgac gccagcttaa cgctaaatcg catcttatcc      4140
     ggttttctcc gtttctggat gattatggag taatgcgagt cggtgggaga atcgagcaat      4200
     ctacactcaa ctataacgcc aagcacccga ttctgatacc taaagataca ccactagctg      4260
     gactcctggt tcgacatttt catgtctcct atctgcacac tggagttgat gcaacgttca      4320
     ccaatcttcg tcagcagtac tggattctgg gagcccgcaa tctcgtcaga aaggcagtct      4380
     tccaatgcaa atcctgtttt cttcaacgaa agggcacaag caaccagatc atgggagagc      4440
     taccaattcc tcgagttcaa gctagccgct gctttcaaca cacagggctg gactacgctg      4500
     gaccgatcgc aatcaaggaa tcaaagggaa gaactccacg catcggaaag gcatggtttt      4560
     ctattttcgt gtgtctcact acaaaggcac ttcacatcga ggttgttagt gagctaacta      4620
     cacaggcttt catcgcagcc tttcaacgat tcattgcccg ccgagcgaag cctactgacc      4680
     tgtattcgga taatggaaca acatttcatg gaggcaagaa aactttggat gacatgagac      4740
     gtctggccat tcaacaagcc aaagatgagg aactagcagg attctttgcc aatgaaggga      4800
     tttcttggca ctttataccc ccgtctgctc cacattttgg agggatgtgg gaagctggag      4860
     ttcgctcaat taaactccat atgaaacgaa tacttggatc aaaggcttta acgtttgagg      4920
     agctctctac tgtcctgacc caaattgaag ctatcctgaa ttcacgcccg ctgtgcccaa      4980
     ctggggataa ttctttggat ccactgacgc ctgctcattt tttgactgga tctccgtata      5040
     ctgcattgcc tgaaccctgt cgtctggata tgcaagtcaa tcgattggag aggtggaatc      5100
     agctgcaagc catggttcaa ggcttttgga aaaggtggca tatggaatac ctgacatctc      5160
     ttcatgagcg gacaaagtgg catctggaaa ccgagaatct gaagatcgac acactggtag      5220
     tactcaagga gcccaatcta ccgccctcta aatggattct tggccgcatc acagcagtgc      5280
     acgcaggaat cgacaacaag gtccgagtcg ttacagtgaa gactgctcac ggattataca      5340
     aacgcccaat tgccaaaatc gctgtactgc ctctctgctg aacaaccgtt caggggggcc      5400
     ggta                                                                   5404
//
ID   BEL_LTR     repbase;    DNA;    INV; 361 BP.
XX
AC   U23420;
XX
DT   14-JUL-1999 (Rel. 4.06, Created)
DT   14-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   BEL_LTR is a long terminal repeat from BEL retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BEL_I; BEL_LTR;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-361
RA   Davis S.P. and Judd H.B.;
RT   "Nucleotide sequence of the transposable element, BEL, of
RT   Drosophila melanogaster.";
RL   Drosoph. Inf. Serv 76, 134-136 (1995).
XX
DR   GenBank; U23420; Positions       1     361.
XX
SQ   Sequence 361 BP; 106 A; 78 C; 64 G; 113 T; 0 other;
     tgtttgggaa cgagacaccc tgtatacgcg aacaagtcac cctttatctt tatttacatt        60
     cttatttgtc tgcagcttca tcggagctta tcagcggaat caatgtaagc atcgcaccgc       120
     tgtaattgtc cgcgagcttg cccagtactt ttccaaactt ctaactccct tctaactgta       180
     acttgtttac gtcttatgct agactaatcg tatggcgtga ttacagccaa agctgaagtc       240
     agtcacaatt ttgatctgcg agaaaacgta cgcatcggtg tcgaaataat taatattaag       300
     tgtctgaact taaccaataa atgaaaatta acagtaacac tggcggtttt atttataaac       360
     a                                                                       361
//
ID   Bica_I      repbase;    DNA;    INV; 4779 BP.
XX
AC   .
XX
DT   02-JAN-2009 (Rel. 14.03, Created)
DT   02-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Internal portion of Bica retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR-retrotransposon; Bica_LTR; Bica_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4779
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-4779
RA   Bartolome C., Bello X. and Maside X.;
RT   "Bica - Gypsy-like retrotransposon from Drosophila
RT   melanogaster.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
CC   Positions [1073-1327] - gag domain
CC   Positions [1661-1945] - Retroviral aspartyl protease
CC   Positions [2243-2776] - Reverse transcriptase (RNA-dependent DNA
CC   polymerase)
CC   Positions [3869-4315] - Integrase core domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           527..4777
FT                 /product="ORF"
FT                 /note="Conceptual translation, with homology to
FT                 GAGPOL protein."
FT                 /translation="MRVKLRDLKIGDLDVILRAHDLQVKGNKTAKINELMT
FT                 KLESDEIETDDYDIMEQNASTSMQAQINELKEMVANLATMVQTACLQQQSQ
FT                 AQGTVEQETTRLRQTLDGSRHTHAPNGMQPENVLSSPQLEAQGQGFTSIKE
FT                 MIGILPDFDPIKGSITSEQFIAKVEQLQSVYMWTSDAVLFAVQHKMRGVAK
FT                 TWLDAQQVYRSWDQFKSAFALDFPCLVSTADVHRELMRRKRRNSESLIEYF
FT                 YAMVAIGRRASVDEPSINSYIINGLNSKELTKSLLAMNIRTCSELLKSLEN
FT                 LRFSQEIHQQQYNASTINEKQYNDADGKMKAVKCYNCNNFGHFAAKCTVPQ
FT                 RKERCSKCSKIGHNEKDCKVKTSSTVAQVNESHHKEYPPIMKTVLIGGQQF
FT                 EAFIDTGSDNTLMKEAAVPDGAIRQPRVKRLKGFGGSVVESKECILSEFAY
FT                 GKLRLFTQIQVVPNEVLPYDVLVGRDIICHDQEMLVAEDSGSTLTAAEQVG
FT                 FNVNTDIDPDHQEQVSDLLKSYKECFAEDLSNIGRCKTTKMDIEVSTTKAI
FT                 LGRRYQVPFAQREMMTTIIGDLLKYGIIERSKSTHAASAILVPKANGERRL
FT                 CVDYRALNAVTIKKRYPMPIVEEQLAKLSGNVYFTTLDMTSGYYQVPMDKK
FT                 SKNLTAFMAPDGLYEFNVMPFGLVNAPMVFQEVITEIIRELKHQRNIINYV
FT                 DEVIIASKTVEEGLIILKEFLDAVKLAGLTLRPSKCAFMKTKVTFLGHVIT
FT                 GNGIQPGNEKTDCINEYQRPCNETEVRRFLGVTGFFRKFVKEYSMIAYPLS
FT                 KLLKKDVDFIWGEDQEQAFQRLKDALTSKPVLTLYDPTKYHEIHTDASKLG
FT                 IAGIMFQREEDGTKPVFYYSRLCSDAESRYSSYALEILAITETLVRFRIYL
FT                 LGSPFLVVTDCNAVATLKESTELQPPIARWWLKLQEFNFTCKHRPGADMPH
FT                 VDGMSRQPVLPHGETSHTVADNVLAIVPTDEDWVYAMQRQDPILAQIFEVF
FT                 RTKEKSSQWSQVKADYVVEASRLLRKTANGNKLVVPQAIRWRITKANHDDI
FT                 GHYGTDKTIQRIQRNFWFPRMRRYVKSYISSCPECCINKVKGGKPEGSLHV
FT                 YDTLPIPFRTINMDHIGPFPKSKSGNLHILVIVCAFTKYTFLAATRTTKTT
FT                 PVIKALQQLFAVFGQPSRIISDRGTAFTSKEFENFTKEQGIQHIKTAVRTP
FT                 RANGQAERMNKTLLNALKTSTEKTKEWDQQLFKIQWGINSHINATTKFSPN
FT                 DLVFNFNPRDVTNNRLIQALSDDSISESDIEMKRQQAAANITNEQKKWKIR
FT                 FDAKHAQPTKYEVNDLVVITFVPSATGESHKLDAAYKGPYIVTKVLNNDRY
FT                 MVEDLPDHTVTQRRYCNVMSSDHMRPMCALIPNLDIDEPIYEYNDDAGMSG
FT                 EAG"
XX
SQ   Sequence 4779 BP; 1688 A; 926 C; 1150 G; 1015 T; 0 other;
     attcagaagt gggatacaaa ttcatttcta agtggaaaat gtgaattaaa gaaaacgagt        60
     taaatagtaa acgattggat tagagacgta caacaaaacg gcacggaata gcaaaacggt       120
     tgtacaagag caaagagaga ttcggaaaaa cggcacgata tagcaaacgt cgaataaaaa       180
     aaaaaaaggg aaaagaggaa tagtaaacga ttggattaga gacgtacaac aaaacggcac       240
     ggaatagcaa aacagttgta caagagcaaa gagagaaacc aaggaagatc gacaaacggc       300
     gaggaatagc aaaaggcaaa gaatcgcaaa cggttgatcg aaaggaaaaa gcaagaaaca       360
     acggtaacgg ttaaaaaaaa aaagggtata catacgaagc cacaaagggt acaggtatag       420
     aaggaaaata gagagagcaa cgtagacgga ctgagcgaca aacttggcgg gagagcgaat       480
     cagaacggca acgagtgcag acgtgcagaa gtaaaggctc tcgaaaatgc gtgtaaagtt       540
     aagggattta aagattgggg atttggacgt gatcttgagg gctcatgatc tccaagtcaa       600
     aggaaacaaa acggcaaaga tcaatgagtt gatgacgaaa ctggaaagtg atgaaattga       660
     gacagacgac tacgatataa tggaacaaaa cgcaagtaca agtatgcaag cccaaatcaa       720
     cgaacttaag gagatggtgg caaacttggc aacgatggtc caaacggcat gcttgcagca       780
     acaaagtcaa gcacaaggga ctgtggaaca agaaacgaca cgcttacgtc agacgctgga       840
     tggatcgaga cacacacatg cgccaaacgg gatgcaaccg gaaaatgtgc tctcatcgcc       900
     acagctagaa gctcaaggtc aaggttttac aagcatcaaa gaaatgatag gaattctgcc       960
     ggattttgat ccaatcaagg gatctatcac atcggagcaa ttcatcgcaa aggtagagca      1020
     actacaaagc gtatacatgt ggacaagtga cgctgtgctg tttgcagtgc agcataagat      1080
     gcgtggagta gcaaaaacat ggctggatgc acagcaggta tatcgatcat gggatcaatt      1140
     caaatcggca ttcgctcttg attttccatg tttagtgagt acggccgatg tgcacagaga      1200
     attgatgcgt cgcaagcgac gcaatagcga gtcattaatt gaatactttt atgcgatggt      1260
     agctattgga cggcgtgcga gtgtcgatga accatcaata aattcgtata tcatcaacgg      1320
     gcttaattca aaagaactca cgaaatcatt attagcgatg aacatacgca cttgttcaga      1380
     gctgctaaag tcgttggaaa atttgagatt ttcacaagag atacatcaac aacaatacaa      1440
     cgcgtcaacg atcaatgaaa agcaatacaa cgatgctgat ggcaagatga aagcagttaa      1500
     atgttataat tgcaataatt tcgggcactt tgcagcaaaa tgcacagtgc cacagcgaaa      1560
     ggaaagatgt tccaaatgct ctaagattgg gcataatgaa aaggattgca aggtgaaaac      1620
     atcgtcaacg gtggctcaag tgaatgagtc gcatcacaag gagtatccgc caataatgaa      1680
     aacagttctc attggaggcc aacagtttga agcattcatc gacacgggca gtgataacac      1740
     cctaatgaaa gaagcagcag tgccagatgg agcaatacgg cagccgagag tcaaacgtct      1800
     gaaaggcttt ggaggatctg tggtcgaatc gaaggagtgc attctttcag agtttgcata      1860
     tggcaaactg agactcttca cgcaaattca ggtggtacca aacgaagtcc taccatatga      1920
     tgtcctcgtg ggcagagata tcatctgcca cgatcaggaa atgctggttg ccgaagattc      1980
     aggatcaacg ttgacagcag cggagcaggt cgggtttaat gttaacacgg acattgaccc      2040
     cgaccaccag gaacaggtga gcgatctatt aaagagctat aaagagtgtt ttgccgaaga      2100
     tttgtcaaat attggcaggt gcaaaacgac gaagatggat atagaggtat ccactacgaa      2160
     agccatcttg gggcggcgat atcaagtgcc gtttgcccaa agggagatga tgactacgat      2220
     aataggtgac ttactgaagt acgggataat tgaaaggagc aagtcaacgc atgcagcatc      2280
     agcaatattg gtgccaaagg caaatggaga acggaggcta tgcgtggact atcgggctct      2340
     aaacgcagtc actataaaga agcgatatcc gatgccgatt gtagaggagc aattggcaaa      2400
     gctatccgga aatgtatact tcacgacgct ggatatgaca tccggttatt accaggttcc      2460
     gatggacaag aaaagcaaaa atttgacggc atttatggca ccagatggac tgtacgaatt      2520
     taatgtcatg ccctttggtc tggtgaacgc accgatggtc ttccaagaag tcattactga      2580
     gatcatacga gagctgaaac accaacggaa tattatcaat tatgtggacg aagtcataat      2640
     tgcatccaag acggtcgaag aaggactcat tatattaaag gaattcctgg atgctgttaa      2700
     gttggcgggc ttaacgctgc gcccatccaa atgcgctttt atgaaaacga aggtgacctt      2760
     tttgggtcat gtgatcacgg gcaacgggat tcagccaggc aatgagaaga ctgactgcat      2820
     caatgaatat caaaggccat gtaacgaaac agaagtacgc agattcctgg gagttacagg      2880
     attcttcaga aaatttgtca aggagtacag tatgattgcg tatccattga gcaaattatt      2940
     gaaaaaggat gtggacttta tatggggaga agatcaggaa caggcatttc aacgactaaa      3000
     ggatgcttta acatcgaagc cggtgttgac tttatacgac cccacaaaat atcatgaaat      3060
     acacactgat gctagtaagc tgggaatagc aggaattatg tttcaaagag aagaagacgg      3120
     aacgaagcct gtattttatt acagccggct atgcagcgac gcagaaagca gatactcaag      3180
     ctatgctcta gaaatattgg caattacgga gacactggtt agattccgga tatatttact      3240
     aggatctcca tttctggtgg tgacagattg caacgcggtg gcgacgctga aggaatcaac      3300
     agagctacaa ccaccaatag caagatggtg gctcaaacta caagagttta atttcacatg      3360
     caaacatcga ccaggagcgg acatgccaca cgtggatggc atgagcagac aaccagtgct      3420
     gccacacgga gaaacttcgc acacagtagc agacaatgta ttagcgattg tgcctaccga      3480
     cgaagattgg gtgtatgcaa tgcaaaggca agacccaata ctggcgcaga tatttgaagt      3540
     atttaggact aaggagaaga gttcacaatg gagccaagta aaagcagact acgttgttga      3600
     agcgagcaga cttctacgca aaacggccaa cggcaacaaa ttagttgtac cccaagcaat      3660
     ccgctggcgt ataacaaaag caaaccacga tgacatagga cattacggca cggataagac      3720
     aattcaacgg attcaacgga acttttggtt cccacgcatg aggagatatg tgaagtcgta      3780
     catatcttcc tgcccagagt gctgcattaa caaagtaaaa ggaggcaaac ctgaagggtc      3840
     actgcacgta tacgacacgt tacctatacc attccgtaca ataaatatgg atcacatagg      3900
     cccattccca aagagcaaaa gtggaaatct tcacattttg gttattgtat gcgcattcac      3960
     caaatacaca tttttggcag caacacgaac gacgaagaca acaccagtaa ttaaagcact      4020
     tcagcagttg tttgcagtat ttggtcagcc gagtcgcata atttctgatc gcggaacagc      4080
     ctttacgtcg aaggaatttg aaaattttac aaaagagcag ggtattcaac atatcaaaac      4140
     ggcagtcaga acacccagag ctaacgggca agctgaaaga atgaataaaa ctttattaaa      4200
     tgctctaaag accagcacag aaaagactaa agaatgggac cagcagttat tcaagataca      4260
     gtggggcatt aattcacaca taaatgccac cactaaattt tctccaaacg atttagtctt      4320
     caactttaac ccaagagacg tgacgaacaa ccgtctaata caggcactat cagacgattc      4380
     catttcagaa tcggatattg aaatgaaaag acagcaagca gcagcaaata ttacaaacga      4440
     gcagaagaaa tggaaaatta ggttcgacgc aaaacacgca caaccaacaa aatacgaagt      4500
     taacgattta gtcgtcatta ccttcgtacc atcggctaca ggagagtcac ataaattgga      4560
     tgctgcttat aaaggacctt atatagtaac aaaggtcctc aacaacgatc ggtatatggt      4620
     ggaagatctg ccagaccaca ctgttactca gcgacgctat tgtaacgtga tgtcaagcga      4680
     ccatatgagg ccaatgtgtg ccttaattcc aaacctggat atagatgagc cgatatatga      4740
     atataacgac gacgcaggaa tgtcaggaga ggccggaca                             4779
//
ID   Bica_LTR    repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   02-JAN-2009 (Rel. 14.03, Created)
DT   02-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Bica_LTR is a long terminal repeat from Bica.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR-retrotransposon; Bica_I; Bica_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-164
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-164
RA   Bartolome C., Bello X. and Maside X.;
RT   "Bica - Gypsy-like retrotransposon from Drosophila
RT   melanogaster.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 164 BP; 60 A; 24 C; 48 G; 32 T; 0 other;
     tgtcaagagg aagagcatga gagaggggga gttgcttgcg agatgccagg gagtgcggac        60
     gtgtgctcgc tgcgtgaacg atgaaggcag atgtatactg aagacatata actattgtaa       120
     cacattaata aaagaaaaga ataaacatga agatcaacct gaca                        164
//
ID   BILBO       repbase;    DNA;    INV; 5530 BP.
XX
AC   U73803;
XX
DT   01-JAN-2012 (Rel. 17.01, Created)
DT   01-JAN-2012 (Rel. 17.01, Last updated, Version 3)
XX
DE   Drosophila subobscura non-LTR retrotransposon BILBO.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; LINE; BILBO.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Drosophila subobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-5530
RA   Blesa D. and Martinez-Sebastian J.M.;
RT   "bilbo, a non-LTR retrotransposon of Drosophila subobscura: a
RT   clue to the evolution of LINE-like elements in Drosophila.";
RL   Mol. Biol. Evol 14(11), 1145-1153 (1997).
XX
RN   [2]
RP   1-5530
RA   Blesa D. and Martinez-Sebastian J.M.;
RT   "BILBO.";
RL   Direct Submission to Genbank (04-OCT-1996)Genetica, Universidad
RL   de Valencia, Calle Dr. Moliner, 50, Burjassot, Valencia 46100,
RL   Spain.
XX
DR   GenBank; U73803; Positions     536    6065.
XX
CC   BILBO is similar to retrotransposons TRIM and LOA. Sequence
CC   analysis showed a 5' untranslated region (UTR), an open reading
CC   frame (ORF) with no RNA-binding domains, a downstream ORF that
CC   had structural homology to that of the I factor, and, finally, a
CC   3' UTR which ended in several 5-nt repeats [1].
XX
SQ   Sequence 5530 BP; 1602 A; 1458 C; 1406 G; 1064 T; 0 other;
     tccgatgatc ctattgggct ttgaggtggc tcagaggggg cctagctgag gccaccggac        60
     gggtcgcagg ttgcggatag cgaacggcct accccagtgg gtaggtcagc tgtgaatagg       120
     cgggcatcct aaagagcatc aactaagttg gctctgaggg agagtaccga aataagcagt       180
     cccggacagc cagcgggtgt tcgcgacgca gcaacactga cgatgcgctt gtggtgccgc       240
     ctctcattaa gtagctcaca caatcccatc cctacacaac acctacccac atcctagccc       300
     caacactcac ctcacaccgg gccggactaa ggtgtcactc gacccgtgcc aagagtcagc       360
     ctggctgggg gcccggtata aacactagcc cagtcgtgaa cggagagctc agggatttgg       420
     cagccccctg ttctaattat gccttacccg ggtaacgcag agctctgccg gggtggaccg       480
     ttccccttct ctgcagctcg tgggaaccat atggagaaat cattaaatat tgtaaacaaa       540
     accaaaaacg agagaggcac tccccaaatg cctgcaggga gaaatcccaa gcgggagaag       600
     gcagcggccc aaaggctggc ccgatccgct cagacgcagg aaagacctgc acggtgaagg       660
     acgcgggtat gaatccgggt ggatcccatc ccaaacctgg gatgggtgga aagtcaacac       720
     ccaaaactga taccatggta gggcagctaa gcaatattgc ggctgcccaa ccttccggtg       780
     aagcggcggg tgaggacttg ccatctacca gcgtccaagc caaaaagtat agctatgccg       840
     aaaagagaag tgctgggcac atactccgtc ggcagaacgc cagccaagaa gtcagtccga       900
     cagcagactg gctgaaaaaa gtagaatggg cctcgacggt gttgcccaac ttcagtgtgg       960
     agccacagaa ggtggccgca caacagaaga ggcaacgctc tcaagagacg cccggacctg      1020
     ccgcgaagcg atccaggatt ctaccaaacg tatccttcgc gcagattgcc aaggagagga      1080
     cgctgatagg cgttctcgat aaaggcagcg cggaggggaa aatacccaga agccaatgga      1140
     agtgggtgga agcggcactg gccgaccgct gcttcgagct tctagagaag gatcccgggc      1200
     cacccccagt ctgcaaggac atgggatggt tccagggaaa tataaaagtg gtagcctgcg      1260
     aggatgagcg ctccgtgaag ctatacaaag ctgcggtggc gcaaatcggt gaggtctacg      1320
     caggggcgaa gctcgtcgct gtagactgga gcgaggtgcc aagtaggcca agagcccgta      1380
     tatgggtacc ggccactttc aaggagcccg agcggatcct aacgatgttg cagagatgca      1440
     accccacact gccaacctca gactggaagg tggctaaagt ggaggcatca aagggcccca      1500
     caaaccaggc ggtagtgatc ctgaacaagg aatcgctagc cccgatcgag gcagccaggg      1560
     gagagctcaa cttcgggttc agctcggtga ccatgaaggt ctacaagtcg gatgcagcgg      1620
     ccgaggcgcg ttctgccaac aaaccagttg agcaggacgt tgcctcggag atcgaggcac      1680
     cggaagtaga cccggagccg gagccggccc tagagagcta ctcctcggag acggagctgc      1740
     tgctcgattt tgaggcgatg tgtcgggacg acatcctcga cgactcagac gccgatataa      1800
     cagtggtgga gaatgtttct aatgaagtct ctgaggcttc tgcagataaa tctccaccac      1860
     tgtaaagcag catccgctgc tcttatactc cgcttagtcg cgagcggagg agacatagtc      1920
     ctaatccaag agccctgggt ggtaggaggc agggtctgtg gattagcgac aaaggactac      1980
     aacctaattg tagcccaaac ggaaggtaaa ataagaacct gcatattagc aagaaagcac      2040
     ttaaatatct ttctgctcca caactttagc aacggcgaca acacggcggc cagcctagag      2100
     ctacaaggga cacgcctgaa cctggtgtcg tcttacatgg ctcatgagga aagcgatcct      2160
     cccagtgacc tcgttcgcaa gattgtcagc gatagcgaga ggtcggacac aagcctacta      2220
     ataggctgcg atgccaacgc tcaccacacc caatggggga gctcggatac aaatgtaagg      2280
     ggtgagtcac tttttagctt catccttaac tccaacctat ttattggaaa tcggggtaat      2340
     gaccccactt tcattataaa aaaccgccaa gaggttattg acctcactct gttatctcac      2400
     aaactgttag acactataaa aagttggaga gtcctagagg accactcctt ctccgaccac      2460
     aggtacatcg agacaaccct atcgctcgaa agcaccatac ccactagcta tgtaaaccca      2520
     agaaaaacca actgggatac gtatagcgca aaaatggagg aattactccc ccccctagcc      2580
     ccaaaatgcc cggatacaca agacgatttt aatcgtcttg tggacaattt cacggaagct      2640
     tgcaataagg ccttcatggc agcttgcccc tcgaccaaac caagagggaa aaagaaaccc      2700
     ccctggtggt ctaaacatat agataccctc cgaaaagact gcaggactct ctttaacaga      2760
     gccaaaagca gcagcgaggt agcgcactgg gaaaattaca aaagtaagct aaccctatac      2820
     aaaaaagaaa caaggagagc aaaaagggcc tcttggcata aattttgctc cgaaattgag      2880
     gacacgtcag aagccgcaag gctacgcaag gtcctgtcaa aaacatcccc ctcggtggga      2940
     tatctcaaga gaactgatgg tacgtggaca aactctagcg aggactccct acacattctt      3000
     ctcgaaactc actttcctgg gtgtacgacc atcgagccgg cagacacccc aagtgaaggc      3060
     ccggaaacct cgatggggca catcctcaca aaacggaata taagctgggc agtaaacagc      3120
     tttaaatcct acaaatcgcc tggcccggac caagtcattc cggctcagct acaaaaagcc      3180
     ggggacgtgg ccatcaactg gctgcaaagt atcttcagga agatactgac agtgggaaaa      3240
     atcccccgcg cttggctaaa ggctaaaata gtctttatac ccaaggcagg aaaaccctct      3300
     cacacaaccc caaaagactt cagaccaata agtctatcgt ccttccttct taaaaccttt      3360
     gaaagactag tcgggctgca gctgaggaaa accattaaac ctcaggctgt caggcgctca      3420
     acatgcctac cgaaaaggga aatccacgga aacggcactc catgaagtaa tctcggcggt      3480
     agagaaatct cttcacgtca aagaatactc cctaatcgct ttcctagaca ttgagggagc      3540
     ttttaacaac gtcataccgg gagccatcac agaggcactg actgacctgg gggtggatcg      3600
     tcacttggtg atgctcatag atcaattgct cacatgcagg acagtgacat catcaatggg      3660
     atcgtccact cagtcaaggt atgtcaacag aggcaccccg caaggcggtg tcctgtctcc      3720
     ccttctatgg aacatagccg tcaataagat cttgtgtgac ttggaagggg agggctgcaa      3780
     ggtggtagct tacgcggacg acgttgccat tatcttctcg ggaaaattcc ctcaaacact      3840
     ctgcgaacta atgaccgcaa agctcgcacg attgtcagaa tggacaaagt cgcgtggact      3900
     gggtattaat ccctctaaaa cggaacttgt gttgtttaca aacaaataca aaatcccgcc      3960
     cctcaacccc ccaatactaa acggatgcag gctctccttc agcgacagtg ccagttactt      4020
     agggttggta attgataaaa agctcagctg gaacctaagc atcaaagaca gagtgaagaa      4080
     ggctacgata gccctctaca cttgcaagaa ggccattggg ctaaaatggg gcatgaaccc      4140
     aagaatagtc caatggatct acctagcaat agttagacca atactgctct acggagtcac      4200
     agtgtggtgg actgccctat cgaaggggac catcacaaaa caactaagca aggtgcagcg      4260
     aactgcagcc ttaagcatca gtggagctct gagcacaacg ccaacggatg cgctaaatgc      4320
     tatactttgc ctgcagagcc ctgaacttgc aggtaaggag caggcagaaa tggcagcaat      4380
     ccgtctcaga gactccgacc aatgggtgtc acaacgcacc ggccatgcat ccatcctaaa      4440
     tggaaacaac atcgtccctg caaaaacgga ctactgcgtt ccgagggagt atacagatac      4500
     cccctttgag acaatcatcc ctcacagaaa cgactggctt gagggaccgc ctggtccaaa      4560
     ggaagccatt caaattttta ctgatggctc aaagcttgac aacaaggtcg gaggaggaat      4620
     atactccgaa ctgctgaata taagctactc cttcaggctc ccggatcact gcagtgtctt      4680
     ccaagcggag gtcatagcga tcaaggaagc tctgagctgt cttcaggaac taacccctga      4740
     agcgacttac ataaacatct acagtgatag ccaagctgca atcaaatcat tgaatgcgat      4800
     aacgacaagc tcggccacag ttgcgaactg tcgcaaatct cttcacgaga tggcttatca      4860
     gttcgtcatc agcctaatat gggtcccggg ccaccaggac attgaaggca actgtatagc      4920
     agatgagctg gccagagctg gaacaacaat cccccttctc aatgataagg aggatattcg      4980
     tatgccaatg gccacctgca agctcagaat aaaagaacat tttaagaaac ttacaaatga      5040
     cagatggcaa actgtgccac tatgtcgcat aactcggcaa acatggccta acataaatag      5100
     gaagcgcacc gatgagctct gcaaactcag taggagtagg tgcagctcag tcatacgctc      5160
     ccttacggga cactggctaa taggcacaca tgcaaacagg ctgggagccc cttataacga      5220
     tttctgtcga agctgtagag atgaggacga ggaggagact gtggaacacc ttttctgctc      5280
     ctgcccggct ctcagtagaa ggagactcca atacttgggc tctccttttc taaatgacat      5340
     ttcggacatg tctacaataa gtcccagacg gatcgctggc ttcataaggg catccggatg      5400
     ggataatgga taaaataggg tctcacggga gagaagggag cgaaacatgc ggtatcacaa      5460
     tgggccgaaa ccggcctaag tgtgtcgggt ctctgacaat ccccgacagc cgcctcaacc      5520
     taacctaacc                                                             5530
//
ID   Blag_1      repbase;    DNA;    INV; 3215 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   08-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_1.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3215
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.;
RG   Mukha D.V;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10 (1202)), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon (BLAG 1 - BLAG 6) closely related to R2
CC   retrotransposons but with a random distribution in the genome.
CC   Phylogenetic analysis reveals that these newly described
CC   retrotransposons form a separate clade. It is shown that proteins
CC   corresponding to the open reading frames of newly described
CC   retrotransposons exhibit unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..3022
FT                 /product="Blag_1_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MNTETNEQSDHTTINVDFSHAEVGLSQTQVSSQNPCP
FT                 HCGGLFKGTHGVAIHISRAHPPEHRQSILTRQSRTKQSTSSEPQLRNPTDN
FT                 DQSIVDRQVDVTEINDCSVLNDDLATYKNEMQKWKLEFSKNNTNDSFNTKV
FT                 QEFLNFLARAVHLLPGPKHPAVRFYEARRQRRQFSNQVRYKQSSNPERGTK
FT                 RARDKRRELYEYQKTQFLFYNQRRKAVRSALNDRHTACKVDINKIFNYFSS
FT                 RLSTENSCERPAYSSNVTEPERAVLDSTEDSVITKQEVAVAVSKIAADTAP
FT                 GPDHVLVRALKDATCYEIIAKIATTMLQHSFVPECLQKARTVLIYKGGDDK
FT                 DLGNWRPITICSVVRRIIERILDARLRALVNLCENQRGFTNSPGTLINTSI
FT                 LESILVAAKSKKKDCTIVFLDISKAFDNVGHNHLQNSLSALRIPFKLSSLI
FT                 LQLQRGNKTQIETGRCRTKPIDIKRGIMQGSPLSPILYNISTDHILDELSN
FT                 QELQDEYGFSVSPGLSNITALGFADDTLIAAKSMNSARILVELAMSRFKEI
FT                 GLDINTDKCRCISIIKGCVRYNPLNLTSGQTIASITPDENIKYLGVSYNAT
FT                 ILDAANSIEELKNKLDRLASTPLLQPHQKYTVLCSFICPTLIYKFQTTPLK
FT                 KLPAKFLSDADVLIKTTLKEVLQLPTDTPDSMLYTDRKYKGLGLFNSSWEA
FT                 FLQHINACQRLQQSQNIHVNTCRNLSHEIKTCIENLGLETTESETYSVKKI
FT                 RKELRERAFQSWCSLSQKGKGVILYKEHTPANKWIRQPDRLSSSDWRLALK
FT                 MTANVCPLRAVPGRSRDGNHCRRCSSEMETLAHVLGACPFSESLRNSRHHH
FT                 IRSVIADALRKKGLVVHEEVHGISTNGSSRRIDMLAIPPGSTSAYIIDPTV
FT                 RFETDEQQPAEVNAEKCRIYNPTVPFYLEKYQLTSIEVIGLLVGARGTIPG
FT                 FFVKFCRKFQLNNNLIRDVSHAAIKGSLAILRNHLYSLC*"
XX
SQ   Sequence 3215 BP; 1042 A; 715 C; 591 G; 867 T; 0 other;
     ggcctatgcc tatatctgac caagtttcat taaacgtatg aataccgaaa caaacgagca        60
     atccgaccat actactatca acgtcgattt ctcacacgct gaagtaggcc tatcacaaac       120
     gcaagtcagt agccaaaacc cttgtcccca ttgtgggggc ttgtttaaag gtactcatgg       180
     tgtagccatc cacatcagtc gtgcacaccc ccccgaacac agacaatcca ttctgactag       240
     gcaatcaaga acaaaacagt ccacatctag tgagccacag cttcgaaatc caactgataa       300
     tgatcaatct atcgtcgata gacaagttga tgtaactgaa attaatgatt gttcagtcct       360
     aaatgatgac ctcgcaactt acaaaaatga aatgcaaaaa tggaaacttg aattctcaaa       420
     aaataacaca aacgacagtt tcaataccaa agtccaggaa ttccttaatt tcctcgctcg       480
     agctgtacat ttacttcctg gtcctaaaca cccagcagta cgcttttacg aagcacgacg       540
     tcagcgccga cagttcagca atcaggttcg ttataaacaa tccagcaatc ctgaacgagg       600
     aaccaaaagg gctcgagaca agaggcgcga attgtatgaa taccagaaaa cgcaattcct       660
     tttttacaac cagaggagaa aagctgttag atcagcactg aacgataggc acacggcttg       720
     taaagttgat attaacaaaa tcttcaacta tttttcgtct cgactatcta ctgagaattc       780
     ttgcgaacgt ccagcatact cttccaatgt caccgaaccg gagcgagctg ttttagacag       840
     tacagaggat tctgttatca ctaaacaaga ggtggcagta gctgtaagca agatagctgc       900
     tgacactgct ccaggtcctg accacgtgct tgtcagagca ttaaaagatg ctacctgcta       960
     tgaaattata gccaagatag ctaccaccat gctacaacat tcttttgtac cagaatgcct      1020
     acagaaagca cgaactgtgt taatttataa aggtggagat gataaggacc ttggtaactg      1080
     gagacctata acaatctgtt ctgtggtgag acggataatt gagcgaatac tcgatgcacg      1140
     tctacgagca ttagtgaacc tatgcgaaaa tcaaagagga tttactaact ctcctggtac      1200
     cttaataaac acatctattt tagaatccat tttggttgcc gcgaagtcga agaaaaaaga      1260
     ttgtacaata gttttcttgg atataagtaa agccttcgac aatgtgggtc ataaccactt      1320
     acagaacagc ttgtctgcac ttagaatacc tttcaaatta tcatctttga tattacagct      1380
     gcagaggggt aataaaaccc aaatagaaac aggaagatgt agaactaaac caatagacat      1440
     aaagagagga atcatgcagg gttcaccact ctctcccatt ctttataata tatctactga      1500
     ccatatcctc gatgaacttt ccaatcaaga gttgcaggat gaatatggat tctcagtatc      1560
     accaggccta tctaacataa cagcattagg ctttgctgat gacacgttga ttgctgctaa      1620
     aagtatgaat tcagcacgaa ttcttgtaga acttgccatg agtagattta aagagattgg      1680
     attagacata aatacagaca aatgtagatg catctccata atcaagggat gtgtcagata      1740
     taaccctctt aatttaactt ctggtcaaac aattgcatca attactcctg atgaaaacat      1800
     aaaatacctt ggtgtcagtt ataatgctac tatccttgat gcagccaact ctatagaaga      1860
     attaaaaaat aaactggata gacttgcttc aacaccttta ttacaacccc accagaaata      1920
     cactgtttta tgtagcttta tctgtcctac tctgatctac aaatttcaaa caacaccact      1980
     taagaagcta cctgctaaat ttctttccga tgcagacgtt ctcattaaaa ccacattgaa      2040
     ggaggtactt caacttccaa cagatacacc tgacagtatg ctgtataccg atagaaaata      2100
     caaaggattg ggactcttta attccagctg ggaagctttt ttgcagcata ttaatgcttg      2160
     tcagagatta caacaatccc aaaatataca tgttaatacc tgccgcaact tgtcccacga      2220
     aattaagact tgcatagaaa atctggggct tgagaccacc gaatccgaaa catacagtgt      2280
     taaaaaaatt aggaaagaat tacgagagcg agctttccaa tcctggtgct ctttaagcca      2340
     gaaaggtaaa ggtgtcatat tatacaaaga gcacactccg gccaacaaat ggattaggca      2400
     accagatcgc cttagtagta gtgattggag actagctctc aaaatgactg ccaacgtctg      2460
     ccccctacga gctgttcctg gaaggtcccg agacggaaac cactgtcgcc gttgcagcag      2520
     tgagatggaa acacttgcac atgtcttggg tgcctgtcct ttcagcgagt ctctgcgaaa      2580
     ttcacgacac caccatataa gatctgtgat cgccgatgct ctaagaaaaa agggacttgt      2640
     tgtgcacgag gaagttcacg gaatctctac gaatggatct tctcgccgca ttgatatgct      2700
     tgccattcct ccaggctcta catccgccta tatcatcgac ccgacagtcc gatttgagac      2760
     agacgaacaa cagcccgcgg aagtaaatgc tgaaaaatgc agaatctaca accccacagt      2820
     tccattctat ctggaaaaat accaactcac ctccatagaa gttattggac tattggttgg      2880
     ggctcggggc acaatacctg gcttctttgt gaaattctgc aggaaattcc agctcaataa      2940
     taatctaatt agagatgttt cccacgctgc catcaaaggc tcattggcca ttttaaggaa      3000
     tcatctatac tctctttgtt aaaaaatact tataatttta tggcagacta ttattttcta      3060
     tactggactt attgtattta ttttatgtat ttctaaaatt attttgtgtt tccgtcccaa      3120
     tcatttaaca actttcagtt tgccattata ttatgctttg tccactgtgg cagtccctta      3180
     gttgggaaag ccgaaaggtt cactttctaa ataaa                                 3215
//
ID   Blag_2      repbase;    DNA;    INV; 3594 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   08-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG 2 non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_2.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3594
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.;
RG   Mukha D.V;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10 (1202)), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon closely related to R2 retrotransposons but with a
CC   random distribution in the genome. Phylogenetic analysis reveals
CC   that these newly described retrotransposons form a separate
CC   clade. It is shown that proteins corresponding to the open
CC   reading frames of newly described retrotransposons exhibit
CC   unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           157..3378
FT                 /product="Blag_2_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MISDSGGPSLPSNDGKTIALVSCKICGKSFTRHGINI
FT                 HIARSHRHSQVLIDIDKPTDSILSETVNFSPSDPIECQDNIHLNTNSSNNE
FT                 KVIRNNSNASSIHLIDGSLIGTPSDSSPAVSQAQCPHCGGSFNGSKGVNIH
FT                 ISRSHPHIHRSTLVTNLTKNASQPLLDEQADRGSSSNSESSQPDSGFNIAL
FT                 NEWKTKFVRTATANDSDFDNMVQDFSHFLSTSINLLPGPRHPATKYYEARR
FT                 KRRLATAEKNYNKSSNPIRASKKAREKRKCKYDYQLTQYQFYNQRRKAVRR
FT                 VLDSTAPSCKIDLTKVHENFAASFSIENPHIRSNYPSKLTDVERIELDETY
FT                 DPTISKEDIAIAAHKIAVDTAPGPDHVLVRVIRNEIVYEILAIIATRMLSS
FT                 GIVPRCFKTARTVLIHKAADVNILSNWRPITICSVLRRVIERVLDKHLRTF
FT                 VSFNEHQRGFTNNSGTLINTSILRKVLKTTKDNKEDVTVVFLDISKAFDNI
FT                 GHKHLDLTLSAEPIPAKLKDLIINLQINNTTNIQTSLGQTKAINLRRGVMQ
FT                 GSPLSPTLYNLATDFIFDELTELSLLQQYGKSISPQLSSLSIMGFADDTLL
FT                 MGKNSETTLELLHIALQRFQEIGLQVNPQKCTGISIKRGKLVEEVLHINEK
FT                 FTIKTINNQEEVRYLGAPFQDNALFDKDSTIKQLHKKLELLASSPLLKSDQ
FT                 KFLVLNTAICPTLIYRFQTTDLQTIPLQFLHTADKLVRSTLKDILQLPTDI
FT                 PDSTLYSPCQNKGLGLFKAAWEIYLQHINACNTLLKSQNSHVLHLCTLQAN
FT                 ISTCLQLLNITNTDLHINNHTGLIDTRKIRNELRLRETENWSHLPHKGVGI
FT                 DLYKEYTPANSWIRHHRGLSCSEWREAIKMQANVSAVRTVPGRSLDGNLCR
FT                 RCNREKETLGHVLGSCPYGEILRNARHHKLRSFIAEQLRRKGYTVYEEIHG
FT                 IATQGSTRRIDILAFQPNSTKGYIIDPTIRFEHHTNQPAEVNAEKQNIYNP
FT                 TIPYYKSQYHLQDITVIGLMVGARGTIPSLFAKFWSEFHLPKKKIYDVVTT
FT                 TLRGSVQILRCHLFGP*"
XX
SQ   Sequence 3594 BP; 1157 A; 815 C; 590 G; 1032 T; 0 other;
     gatcagtgat ggtgagtgct gtgtaaaaga tgacgtcgaa tgcgaccccg ctgttactta        60
     aacatcatta tacttgttga tatcttcaaa ctactacaat ttatgttgga ttttctccgt       120
     gaagactgac ttctctcctt agacattgtt ttactcatga tatcagattc tggaggacct       180
     tcgttaccat ctaatgacgg taagactatt gctttagtct cttgcaagat atgtggaaaa       240
     agttttacta gacatggaat taatatccat attgctagaa gccatagaca ttcccaagtt       300
     ttgatagaca ttgataagcc tactgattca attttatcag agactgtaaa cttctcacct       360
     tctgacccta ttgaatgcca ggataatatc catcttaata ctaattcatc taacaatgag       420
     aaagtcattc gtaacaattc caatgcatca agtatacatc taatagatgg ttcattaatt       480
     ggtactccct ctgactcttc tccagctgtt tcgcaagctc aatgtcccca ttgtggaggt       540
     tcatttaacg gatctaaggg tgtcaatatt catattagtc gatcgcatcc ccacattcat       600
     agatcgacat tagttacaaa tttaactaaa aatgcgtccc agccgctcct tgatgagcaa       660
     gctgataggg gtagttctag taattcagaa tccagtcaac ctgactcagg ttttaacata       720
     gccctgaatg agtggaaaac aaaatttgtt cgcactgcaa ctgcaaatga ctctgatttc       780
     gataacatgg tccaggattt ttcacacttc ttaagtacta gcatcaatct tttacccgga       840
     cctcgacatc ccgcaaccaa gtactatgaa gcccgcagga aacgacgtct cgcaacagca       900
     gaaaagaact acaataagtc ctccaacccc atacgtgcca gcaaaaaagc ccgtgagaag       960
     aggaaatgca aatacgatta tcaactgacg caataccaat tctataatca gagacgtaag      1020
     gccgtccgtc gagttctcga ttctacagca ccttcttgta aaatcgatct cactaaagtt      1080
     catgaaaatt ttgctgccag tttttccatt gaaaatccac acatcaggtc aaattaccct      1140
     tccaaactaa ctgacgtgga acgtatagaa ctagatgaga catacgatcc tactatctcc      1200
     aaagaagaca tcgctattgc agcccacaaa attgcagtgg acacagcccc cggccctgat      1260
     cacgttcttg ttcgagtcat ccgcaatgag attgtgtatg aaatcttagc aataattgct      1320
     acaagaatgc tttcctctgg aatcgttcct cgttgcttca aaacagctcg gactgtctta      1380
     atacataaag ctgcagatgt taacatcctc tcgaactgga gaccgatcac catttgttct      1440
     gtacttagga gagttattga acgagttctg gacaaacatt tacgtacttt tgttagcttc      1500
     aatgaacatc agagaggctt tactaataat tcaggcactc ttatcaacac gtctatccta      1560
     agaaaagttt taaaaaccac aaaggacaac aaagaagatg ttactgtagt atttttagat      1620
     atatcgaagg ctttcgataa tattgggcac aagcatttag atttaacatt atcagcagaa      1680
     cctatccctg ctaaacttaa agatcttatc ataaatctac aaatcaacaa taccacgaat      1740
     atccaaacat ctctaggtca aacaaaagct attaacctac gacgtggtgt tatgcaaggc      1800
     tcccctttat cgccaacatt atataatctt gctacagatt tcatcttcga tgaactcact      1860
     gaattgagtc ttttgcaaca atacggaaaa tccatctctc ctcagttatc ttctcttagc      1920
     atcatgggct tcgctgatga cactctcctc atggggaaaa attcagaaac tactctcgaa      1980
     ttattacata ttgcactaca gcgttttcaa gaaataggtc tacaagtaaa tcctcaaaaa      2040
     tgcacgggaa tatctataaa aagaggaaaa ctggttgaag aggttcttca tatcaatgaa      2100
     aaattcacca ttaagaccat aaataatcaa gaagaagttc gttaccttgg ggcccccttt      2160
     caagataacg ctctctttga taaagactct actataaagc agctgcataa gaaattagaa      2220
     ctattagctt catccccttt actaaaatct gatcaaaaat tcctagtcct aaataccgct      2280
     atttgtccaa cccttattta tcgctttcaa accacagatc tacaaaccat tcctttgcag      2340
     tttttacata ctgccgataa attagtcaga agcacattga aagatatttt acaattgcct      2400
     accgatatcc ctgatagtac tctatattcg ccttgtcaaa acaaaggtct tggtcttttt      2460
     aaggcagctt gggaaatcta cctccaacat atcaatgctt gtaacactct cctcaaatca      2520
     cagaactccc atgtccttca cttgtgtacc ttgcaagcga atatctctac ctgtctccaa      2580
     ctcctcaaca ttacaaatac cgatctacat attaacaacc acacaggcct cattgacaca      2640
     aggaaaatcc gaaacgaact tcgacttcga gaaaccgaga attggagtca tctacctcac      2700
     aaaggagtcg gtattgatct ttataaggaa tatactcctg ccaacagctg gataaggcat      2760
     catagaggac tttcttgcag tgaatggcgc gaggcaatca aaatgcaagc taatgtatcc      2820
     gcagtgagaa ccgttccggg cagatctcta gacggcaacc tctgtcgcag atgcaacaga      2880
     gagaaagaaa cacttggcca cgtcttggga tcctgtccct atggtgaaat actgaggaat      2940
     gcccgccatc ataaattgcg atccttcata gctgaacaac ttcgcaggaa gggatatacc      3000
     gtttacgaag aaatccatgg aatagctact caaggcagta cacgtcgaat tgacatttta      3060
     gcctttcaac caaacagtac gaaaggatat ataattgacc caactatcag gttcgaacac      3120
     cacactaacc aacctgctga ggtgaatgcc gaaaaacaga acatttataa tcctaccatt      3180
     ccatactaca aaagtcaata ccatctacaa gacatcacag ttatagggct tatggtagga      3240
     gcccgtggca ctattccatc cctgttcgcc aaattttgga gtgaattcca cctgcctaag      3300
     aagaaaatct atgatgttgt caccactacc ttacgtggat ctgtccaaat tctacgatgt      3360
     catctctttg gtccttaaat attcatcaac agaagaatca ccaaaattgc tacttgatat      3420
     taccttacaa caccttgtac aaaattgtaa tttttattta tatttatgta tttacagcta      3480
     tgttatttgt aactctagta tataatgcat acgttatact ttgtccatag tggcaactcg      3540
     caactgcgag aagttgttga tttcgttcaa taaatatata taatatatat ttat            3594
//
ID   Blag_3      repbase;    DNA;    INV; 3371 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   08-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_3.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3371
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon (BLAG 1 - BLAG 6) closely related to R2
CC   retrotransposons but with a random distribution in the genome.
CC   Phylogenetic analysis reveals that these newly described
CC   retrotransposons form a separate clade. It is shown that proteins
CC   corresponding to the open reading frames of newly described
CC   retrotransposons exhibit unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           288..3239
FT                 /product="Blag_3_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MPLINNEDHSNIVTILSTSTANDNNGNSNSLITTNAI
FT                 TSQDQTKLCTLCGKRFKSLAIHVSKAHGEAYRKKLSHKYECPLENTKDTDT
FT                 DSPSSINPITVADVSSPATQQILQFEKALEECILSSDLNRFEEITVEITAY
FT                 LSKAIASLPGPKHPATRYYNARKLRQTIHGTSYSNTKNPARLSKRKRKDNK
FT                 QKYQYEVAQFHYFNQRRKVVRQIMKNHNNVQCQISIPIIFQHFNTLFNNEN
FT                 PFTPIESIHPMSTEEDIEITEDEIKAAMAKIKIDTSAGIDHVLVRTIKELK
FT                 TSKLLCLLTNAMLKFEICPGILKTARTVLLFKGGDETKLSNWRPISIFSVI
FT                 RRIIEKVIDRLLKSYIELSPHQRGFINVPGTHINTSIINGCLTRAKKEKRN
FT                 CCIAFLDISKAYDNVGHEHVKRCLLRTNMPNNLRDLVLNLLQDNKIQIESG
FT                 FQKTKPIQVQKGVAQGSPLSPGLFNLALDDTLKELADPNVREVFGFSLHPD
FT                 LEKVSVLAFADDIALISKDEASLQTLINMTVFNLDAIGLKVNPKKCKLINI
FT                 KNGFLEQGQILVGGQTLEFIKPGEIIKYLGVTFEDEIVLDKSTLIKNFEND
FT                 LNSLTVSNLLTPDQKLNIVNQYIWSRLIYPLQCTPLDKIPPSFLQDIDKLL
FT                 RSSIKEIIGLPSDCPTDMLYAARNVRGLGLIKAEWEASIQHFNIARTLLNT
FT                 NDDHLHCSRNLVKEQQQSLVQLDIPCNEQVLQKSSRWLRNQLRTRSYEAWC
FT                 KLPHKGKGVEVFKQVPDSNSWLVNRIGLSTSEWTNAIKMSCNTTAVRTIPG
FT                 RSKHTTKCRHPGCEHQETLGHVLGMCAKGELLRNTRHHKVRSYIATHLRKA
FT                 NWEVYEEVHCTSEDGSHRRADILAIDRQAGRGLILDPTIRMEQDGEQAIRV
FT                 NTEKETIYRPCIPHFSERYNLPVNAWAVKGLLFGSRGTAYQWTADILKGLG
FT                 MSVINLKLCCSMILKDSIQILQNHLYNQT"
XX
SQ   Sequence 3371 BP; 1157 A; 601 C; 577 G; 1036 T; 0 other;
     ttgagaaggc tgtggaatta taagtttttg atattgctat actgggacct attaatcttt        60
     aattatcaat atctactaca tcttttggaa attatgtata tggattatat attatatact       120
     taatagctga tgtgaaagta ttagtgtggt tccttaacca atattatgtg agaaatattt       180
     tacttctttt caaggtatga attcgttact ttttgtttac atagtaacgc cattatatgc       240
     ttattgtaat taattatttt tgtaaaatta ttatataaag acaaagtatg cctcttatta       300
     ataatgagga tcattctaat attgtcacca tactttctac aagtacagct aatgataata       360
     atggaaattc aaatagtttg attaccacaa atgccattac aagccaagat caaactaaat       420
     tatgtacatt atgtggtaaa cgatttaaat ctctagccat tcatgttagt aaggcccatg       480
     gtgaagctta caggaaaaaa ttatctcaca agtatgaatg tccgttagaa aatactaaag       540
     acactgacac ggattctcca agctccatta atcctataac agttgctgat gtttcttctc       600
     ctgcaactca acaaattttg caatttgaaa aagcacttga agaatgtata ttatcatctg       660
     atcttaacag gtttgaagaa attactgtag aaataacagc gtatttatct aaggctatag       720
     catccctccc tggaccaaaa catccggcta cacgttacta taatgcaaga aaactccgcc       780
     aaacaattca tgggacttca tactctaata caaaaaatcc tgcacgttta tccaagcgaa       840
     aaaggaagga taataaacaa aagtaccagt atgaagtagc acaattccat tattttaatc       900
     agaggcgtaa agtagtgaga caaattatga aaaatcataa taatgtacaa tgccaaattt       960
     ctatccctat tatatttcaa cactttaaca cattgtttaa caatgaaaat ccttttacgc      1020
     ctatagagtc gattcatcca atgtccactg aagaagatat tgaaatcact gaagatgaaa      1080
     tcaaagctgc aatggcaaaa atcaaaattg acacttctgc tggtatagat catgtcttag      1140
     ttaggactat taaagaacta aaaacatcta aattattatg tttgttaaca aatgctatgc      1200
     ttaaatttga aatatgccct ggaatattaa aaacagccag aactgttctg ctttttaaag      1260
     gaggcgatga aacaaaactc tctaattgga gaccaatctc cattttttct gttatacgcc      1320
     gcattattga aaaagtaatt gacagactac taaaatcata tatagaacta tcacctcacc      1380
     agcgtggctt tattaatgtc cctggtactc acataaatac atccatcatt aacggttgcc      1440
     tcacaagagc taaaaaggaa aagaggaact gttgcattgc cttcctcgat atttccaaag      1500
     cctatgataa cgttgggcat gaacatgtga aacgatgttt acttagaaca aatatgccaa      1560
     ataatttaag agacttagtg cttaatcttt tacaggacaa caaaattcag atcgaatctg      1620
     ggttccagaa aactaaaccc atacaagttc agaagggagt agcacaaggt tctccattgt      1680
     cccctggttt gtttaacttg gctcttgatg acacacttaa agaattggct gatcccaatg      1740
     ttagagaagt ctttgggttt tccttacatc ctgatcttga aaaggtgtct gtcttagctt      1800
     ttgctgatga tatagcctta ataagtaaag atgaggcttc tttgcagaca ttaatcaata      1860
     tgactgtttt caatttagat gccattggtc tgaaagttaa ccctaaaaaa tgcaagttaa      1920
     ttaatattaa gaatggcttt ctagaacaag gacaaatatt ggttggaggt caaacattag      1980
     aatttataaa accaggagaa attatcaaat atttgggtgt tacttttgaa gatgaaattg      2040
     tgttggacaa atcaacttta atcaagaatt ttgagaatga tctaaattca ctaacggttt      2100
     ccaatttact tactccagat caaaaattaa atattgtcaa tcaatatatc tggtcaaggc      2160
     tcatatatcc tttgcagtgt actccattag ataaaattcc tccttccttt ttgcaagata      2220
     ttgataaatt actaaggtct tctattaagg aaatcattgg cttaccaagt gattgcccta      2280
     ctgatatgct gtatgcagcg agaaatgtcc gtggattggg tctaattaaa gcagaatggg      2340
     aagcttcaat acagcacttc aacattgcac ggacattgtt aaacacgaat gatgaccatc      2400
     ttcactgctc tagaaatctt gtaaaagaac aacaacaatc actcgtccag ctagacattc      2460
     cttgcaatga acaggtccta cagaagtcca gtagatggct aagaaatcag ctacgtacaa      2520
     gatcctatga ggcttggtgt aaactcccac acaaaggcaa aggcgttgaa gtgtttaaac      2580
     aagttccaga ttcaaattca tggctggtta atagaatagg cctttccaca tctgaatgga      2640
     ctaacgccat taagatgtcc tgcaatacaa cagcagtaag aacaattcca ggaagatcta      2700
     aacacaccac aaaatgtcgt caccctgggt gtgaacatca ggaaactctt ggccatgtcc      2760
     ttggaatgtg tgcgaaaggt gaattattaa ggaacactcg tcatcataaa gtgcgttcct      2820
     acattgccac tcacctccgt aaagccaatt gggaggttta cgaggaagta cactgtacat      2880
     cggaagatgg aagtcataga agagcagaca ttttggcaat tgataggcaa gctggacgtg      2940
     gactcattct cgacccgacc atcagaatgg aacaagatgg tgaacaggcc attcgtgtta      3000
     acacagaaaa ggagacgatt tatcgtccat gcatacctca cttcagtgag agatataact      3060
     tacctgtaaa tgcatgggcg gtgaagggtc tcctcttcgg ttctcgtggc acagcttatc      3120
     aatggacagc agacatatta aagggattag gtatgtctgt tataaatttg aaactatgct      3180
     gttcaatgat tttgaaagat tctattcaaa ttctccagaa tcacttatat aatcaaactt      3240
     agacaaaaaa tgtttttttt aaattatttt caacattttt aaattcattt tattatcaaa      3300
     attcatcttg ttttctggat ccaagaggtc tcccgataat tcgggcagat gttctttttg      3360
     aacttagtag t                                                           3371
//
ID   Blag_4      repbase;    DNA;    INV; 3501 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   04-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_4.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3501
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.;
RG   Mukha D.V;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon (BLAG 1 - BLAG 6) closely related to R2
CC   retrotransposons but with a random distribution in the genome.
CC   Phylogenetic analysis reveals that these newly described
CC   retrotransposons form a separate clade. It is shown that proteins
CC   corresponding to the open reading frames of newly described
CC   retrotransposons exhibit unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           437..3361
FT                 /product="Blag_4_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MSEIHSAGMSSLPTASSQNNSSCPYCGKYYRRLSTHI
FT                 TKSHPEQHRKSIVMRNTSSVSPVVQTASKDDNVSNSSANTNSDVGHLHEIR
FT                 SEVMSFREKFSSLLLSDPCPSKFNEIYNDFTDTLVTINSKLPGPKNPSVRY
FT                 YELRQRNKNIFAANDRKYKDSSNPQKKSKRDRAKRREKFQYELLQYQFYNE
FT                 RKKCVNSLLNDNKRNEPCNIPIGVLKEAMEEKWGTLNTSMLDHYNNSMSPH
FT                 SQQNDLDQLFTIPVEVIQQSLNKMRTDSAPGPDRILVRTLKLTECSPVIAV
FT                 ILKIMLQWGMVPDRMRGARTILIYKGKGERCSVSSWRPISVCSVIRRLIER
FT                 ALDSVLRQYLTLNNNQRGFVSQLGTSINTSLVDGCLKKAKLEQRNVSIVML
FT                 DVAQAFDSVGLDHLEKCLDSQFLPTSLCTLIKTLTRGNFTRIHNGKQISEP
FT                 IELKRGVFQGSPLSPILFNLSIDFIIKELSEKQITDKYGFKISNNLDHLSV
FT                 AAFADDLVVIGQNMHAARELVMMTKYLLQQIGLQLNIAKSVSINIEHGKLQ
FT                 DKELLLYSGYAIRGITKEEKIKYLGVSFNDEIIFDRESFITSLRNDLQILV
FT                 STPMLRPDQKLNIVNQYIWPKFIYALQMVPVHKLPLTFLEDVDKLIRSAVK
FT                 EMLLLPSDVPNSMLYSAKQFRGLGLVRASWEAFLQNCNTVINLLLADNAYV
FT                 NAVRPLLTELQSSCKHLDMVFPSELRKSITRSFREKLRRREFELWSNLPGK
FT                 GRGVVLYSEVPKANKWIANKSGLSTSEWVSSLKMNVNVAAVRAIPGRSLDG
FT                 SRCRYGCPETETLAHVQGQCDHGLLLRNARHHQVRSLIASALRKKGWEVEE
FT                 EISCIATNGSTRRVDILAYSKTTRIGYIIDPTIRYEKNADQSEEVDQEKKI
FT                 IYEPTIPYFKTKYDLNSLEVIGLLIGARGVIPNFFSNFLKQFDLPKTLLED
FT                 IVVIVLKRSCQILSNHLRF*"
XX
SQ   Sequence 3501 BP; 1139 A; 580 C; 623 G; 1159 T; 0 other;
     aggaggcagt gaagttgaat tggcttctgt tgatgggctc tgtacatttt ctatcatttt        60
     tcatgttttc atgcgacttg ctgcttcgga agtgttttca attcaagttt acatgtatat       120
     ctattcagaa acgtattagt ggtggtaact attaattatt ttgtgaaaat ttgtttcata       180
     tatattgaat acttgaagtt gtttatttta cctagtaaca cattagttac gtgcttatat       240
     ggacatttat tgaaactgaa taggaagaat ttttattttt aattattttt aattattttt       300
     ttttatttat ttatttattt ttattattca tatacccgta aagatctaat taggtacttc       360
     attattattc atattttatt tattgactta attaattaac ctgtaaatcg taacataacc       420
     attatatacc tgtaacatgt cagaaatcca tagtgctgga atgagttctt tgcctaccgc       480
     ttctagtcag aataattctt catgtccata ttgtggaaaa tattatcgtc ggttaagcac       540
     ccatattaca aaatcacatc ctgaacagca tcgaaaaagt atcgttatga gaaatacaag       600
     ttctgtttct cctgtcgtac aaactgcttc caaggatgat aatgtaagta attcttctgc       660
     taatactaat tcagatgttg gacatttaca tgaaattaga tctgaagtga tgtccttccg       720
     agaaaaattt tcatctttgc tactttcaga tccttgtcct tctaaattta atgaaatata       780
     caatgacttt actgatacac tagttaccat taatagcaaa ctaccgggac caaaaaaccc       840
     ttctgtacgt tattatgaat tacgacaacg gaacaaaaat atttttgcag ccaatgatag       900
     gaaatataaa gatagtagca accctcagaa aaaatccaag agggatagag ctaagcgacg       960
     tgaaaaattt cagtatgagc ttcttcaata tcaattttat aatgaacgaa aaaaatgtgt      1020
     taattctcta ttaaatgata ataaacgtaa tgaaccttgc aatattccta ttggagttct      1080
     aaaggaagca atggaggaaa aatgggggac acttaatact tctatgttag atcattataa      1140
     taattctatg tcaccgcact cacagcagaa tgatttagat cagctcttta caattccagt      1200
     ggaagttatt caacaatcac tcaataaaat gcgtactgat tcagcacctg gacctgatag      1260
     aattttagtg cgaacgttaa aattaaccga atgctctcca gttattgctg taattctgaa      1320
     aatcatgctt caatggggta tggttccaga cagaatgcgg ggggcaagaa ctattctaat      1380
     ttataagggt aaaggcgaac gttgtagtgt atctagttgg aggcctattt ctgtgtgctc      1440
     ggtaattcgc aggttaatag agcgagcgct tgattcagtt cttagacagt atcttactct      1500
     caataataac caaagaggat tcgtttctca acttggcaca tctattaaca catctctagt      1560
     tgatggttgt ttaaagaaag caaaattgga acaacgaaat gtttctatcg ttatgcttga      1620
     cgtggcacaa gcttttgatt ctgttggatt agaccattta gaaaaatgtt tagattccca      1680
     atttcttcca acatcacttt gtactttaat aaaaacgttg actagaggta actttacacg      1740
     gatccataat ggtaaacaaa tttccgaacc cattgagctt aaaaggggtg tttttcaggg      1800
     atcgccccta tccccaattt tatttaacct ctcaatagac tttattatta aagagttgtc      1860
     tgagaaacaa attactgata aatatggttt taaaatttct aataatttag atcacttgtc      1920
     ggtggctgca tttgcagacg atttggttgt tatagggcaa aatatgcatg ctgcccgaga      1980
     actagtcatg atgacaaaat atttacttca gcaaataggt cttcagctga acattgcaaa      2040
     gtccgtatct ataaatatcg aacatggaaa gttacaggac aaggaattac ttctttatag      2100
     tggttatgct attagaggca ttacaaaaga ggaaaaaatt aaatacttag gagtttcttt      2160
     taatgatgaa ataatttttg accgtgagtc atttataact agtctaagaa atgatctcca      2220
     aattttagta tcaactccaa tgcttcgtcc agaccagaag ttaaatatag tcaatcaata      2280
     tatatggccc aaatttatat atgcactcca aatggttcct gtacataaac tgcctctaac      2340
     atttttggaa gatgtagaca aattaatacg tagcgccgta aaggaaatgc tgcttttacc      2400
     atcagatgta ccaaatagca tgttatattc ggcaaaacaa tttcggggtc taggactagt      2460
     acgagcttct tgggaagcat ttctccaaaa ttgtaatact gttataaatt tattactggc      2520
     tgacaatgca tatgtgaatg ctgtgagacc tttattaacc gaactccagt catcctgcaa      2580
     acaccttgat atggtatttc catcagagct tcgaaaatca ataacacgat catttcgaga      2640
     aaaacttcgt cgtcgggaat tcgaactttg gagtaattta ccagggaaag gaagaggtgt      2700
     tgttttgtac agtgaagttc caaaagccaa taaatggatt gccaataaat caggactatc      2760
     tacttcagaa tgggtctctt ctttgaagat gaatgtcaat gttgcggccg tacgggcaat      2820
     tcccggcagg tctttggacg gatcccggtg cagatatggc tgcccggaga ccgaaactct      2880
     tgcccacgtc caaggccaat gcgatcacgg gttgctactg cgtaatgctc gtcaccacca      2940
     agtacggtct ctcattgctt ctgctttaag aaagaaaggt tgggaggtag aagaagaaat      3000
     tagttgtata gcaacaaatg gctccactag aagagttgat atattggcgt actccaagac      3060
     cacgagaatt ggttatatta tagatcctac catccgatat gagaagaatg ccgatcaatc      3120
     tgaagaagtt gatcaggaga aaaaaataat atacgaacca acaataccat attttaaaac      3180
     caaatatgat ctcaacagct tggaggtcat tggacttcta ataggtgccc gaggtgttat      3240
     tccaaatttt tttagtaatt tcctaaaaca atttgattta ccaaaaactt tattagaaga      3300
     cattgtagta atagttttga aaagatcctg ccaaatttta agtaatcatt tacgttttta      3360
     acatttataa aattttagtt ctattagtct tatgattatt gttttattgt tcttattgtt      3420
     ttatatatac tgtatttatg ttttgtatac tgaggcaaaa gtgtctacct ctgttgggag      3480
     gcagtattga ataaataaat a                                                3501
//
ID   Blag_5      repbase;    DNA;    INV; 3426 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   04-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_5.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3426
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.;
RG   Mukha D.V;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon (BLAG 1 - BLAG 6) closely related to R2
CC   retrotransposons but with a random distribution in the genome.
CC   Phylogenetic analysis reveals that these newly described
CC   retrotransposons form a separate clade. It is shown that proteins
CC   corresponding to the open reading frames of newly described
CC   retrotransposons exhibit unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           261..3227
FT                 /product="Blag_5_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MILSTDEESITPINTSVSTNTEISSVASEVPCPHCGK
FT                 FFVNSRGISIHISKSHPDLHRLKLVERQTTSSYTIWNSGESSSTCKTSIND
FT                 TPSKSHPVSVNDPLSNYKQQLLTWTTKFDCDLTDIDFDTLTNNFLQFLSEA
FT                 IYYLPGPKHPARKYYALRKKNKNFNCQQSYKNSSNPDRATKRDRAKRKQKY
FT                 QYEQTQFDYYNQRRKAVRRVLTSDKPSCQIAVDKVYAHFNSYFSRPNNCIR
FT                 PDYISHVTEVERVELNDSFPTHITKEEIKFAISRIAVDTAPGPDHVLMRVL
FT                 KDDAATGVLSLLATRMLRTGHVPPCLLIARSILIHKSGDVNDITNYRPITI
FT                 CSVVRRVIERTLDRRLKEYVSFNRHQRGFTSSPGTLMNTSLLRSILTSAKT
FT                 KKCNATLVFLDIRKAFDNVGHLHLQKTLESLPIPSLLSNLILNLQENNHTR
FT                 FEINHHKTNLVPLARGVMQGSPLSPTLYNLSTDHILNELSEDGVAKAYGYQ
FT                 LVPGLKPVTVLGFADDTVIVANSTTSALELTKMAIERFRSIGLEINFSKSV
FT                 AINISCGKLNPNYSLLVAENATIPCLGPNEFVRYLGVNFADACLFDSQVTL
FT                 NDLKNKLDLLISSPLLNPDQKFCILNSSICPSLIYTFQTTPLNKIPNKFIE
FT                 AADKIIKSGLKEILQLPADIPDSMIYTHRKFKGLGLFRVKWESALQHINSL
FT                 RILHRANDAYISSTRNLYDESKHCLTELKLKFSDSLLNKHDNFLDSRKIRE
FT                 TLRDREFNTWCSLQSKGRGVILFKEFPPCNQWITNHEGLSSSEWKDAIKMV
FT                 GGVAPVRAVPGRSRDTNRCRRCLNEIETLAHVLGSCPHGENLRNIRHHTIR
FT                 SILAAALRDVGFIVHEEVQGLATQGSIRRIDIIAIRNNTAYILDPTIRTET
FT                 HAEQPREVDMEKRAIYEPTIPYYKEKYHLSTIEVVGLMVGARGTIPSHFAE
FT                 ICKRLGLSSFIIKSIAVSALKGSILLLRHHLYG*"
XX
SQ   Sequence 3426 BP; 1065 A; 704 C; 598 G; 1059 T; 0 other;
     taagaaggcc atgacttgag tttgctacta ttctatgtgc atcgcaactt ttttacaatt        60
     ttacctgctt atctactatt gaatcgttga actttattac cagagttttt gtgatatatt       120
     gactgtttgc tacaaatatt aggatgattt tattttgagt atcttggata taagtattga       180
     aaattcattt atactgactg tttaccttag caacctgctt cccaggtttg aatcaatttc       240
     ataaatttta agttataaac atgatactat caactgatga agaatcaatt acgcctataa       300
     atacctctgt gtctaccaat accgaaatat ccagcgtagc cagtgaagta ccatgtcctc       360
     attgtggaaa attctttgtg aactcaagag gtatttcgat ccatataagt aagtctcatc       420
     ctgatttaca tagacttaag cttgttgaac gacaaactac aagttcctat actatttgga       480
     attctggtga atcatcgtca acttgtaaga cgagtattaa tgacactcct tctaaaagcc       540
     atccagtgtc tgtgaatgat ccattatcca attacaaaca acagttactt acatggacaa       600
     ccaaatttga ttgtgactta accgacattg attttgatac tttaacgaac aattttttac       660
     aatttctttc tgaagccata tattatttac ctgggcctaa acacccagct agaaaatatt       720
     atgctctgag gaagaaaaac aaaaatttca attgtcaaca atcttacaag aattcttcta       780
     atccggacag ggccacaaaa agggatagag caaaacgaaa acaaaaatat caatatgaac       840
     aaacacagtt tgactactat aaccagcgtc ggaaagcggt cagaagagtt ctcacttcag       900
     acaagccatc atgccaaata gcagtagata aagtgtacgc acatttcaat tcctacttta       960
     gtcgtccgaa caactgtata cgaccagatt acatctccca tgttactgaa gtcgaacggg      1020
     ttgaactaaa tgactccttc ccgactcata ttacaaaaga agaaattaaa tttgcaatat      1080
     caaggatagc tgttgatacc gctccaggtc cggaccacgt cctaatgcgg gtgttaaaag      1140
     atgacgctgc tactggggtc ctctcacttc ttgctacaag aatgctacga acaggacatg      1200
     ttcctccctg cctcttaatt gcccgaagta tccttatcca caaatctggc gatgtcaatg      1260
     acattactaa ctatcgacct attaccatct gttcagtggt gcgcagagtt atagaaagaa      1320
     ccctggatcg acgtcttaag gaatatgttt ctttcaaccg ccatcaaaga gggtttactt      1380
     catcccctgg gacgctcatg aacacctctc ttctcagatc catcctcacc tcagcaaaga      1440
     ccaagaaatg taatgctact ctagtatttc ttgacattcg aaaggctttc gataatgtag      1500
     gtcatttaca tctccaaaaa accttagaaa gcctacctat tcctagtctg ctctctaatt      1560
     taatactcaa cttacaagaa aacaaccaca ctagatttga aattaatcac cataaaacca      1620
     atcttgtacc tctagcgaga ggtgttatgc aaggatcacc cctctcacct acgttgtata      1680
     atctttcgac cgatcacatt ttgaatgaac tttccgaaga cggtgtcgcc aaagcatatg      1740
     gttatcaact tgtcccgggg ttaaaacccg taaccgttct cggatttgca gatgatacgg      1800
     taatagtcgc taatagtaca acatcggccc ttgaattaac taaaatggcg atagaacgtt      1860
     ttcgaagtat cggtctagaa attaattttt caaaatccgt ggctattaat atatcttgtg      1920
     gcaaacttaa cccaaattat tccttattag ttgcagagaa tgccactata ccttgtctag      1980
     gtccaaatga gttcgttcgt tatttaggtg tgaattttgc tgacgcctgt ttgtttgatt      2040
     cccaagtgac tctcaacgat ttgaaaaata aattagacct cttgatttca tcaccattgt      2100
     taaatcccga ccaaaagttc tgtatattaa attcatcaat ttgtccttcc ttaatataca      2160
     cttttcaaac aacgccctta aacaaaatcc ccaataaatt tatcgaggcg gcagataaaa      2220
     taattaaaag cggattgaaa gaaattttac aacttccagc tgatataccg gactccatga      2280
     tttataccca ccgaaaattt aaaggcctcg gactgtttag agtaaaatgg gagtccgctt      2340
     tgcaacatat taatagcctc agaatcctcc atcgggcaaa tgatgcttac atatcatcca      2400
     cacgaaattt atatgatgaa agcaaacact gcttaactga gctaaaacta aaatttagtg      2460
     actcacttct gaataaacat gataactttc tcgattctcg taaaatacgt gaaactttac      2520
     gtgaccgtga gttcaatact tggtgtagtt tacaaagcaa aggtagaggg gtgattcttt      2580
     ttaaagagtt ccctccatgt aatcagtgga taaccaatca tgagggtctg tcaagttccg      2640
     aatggaaaga cgctataaaa atggtcggtg gtgttgctcc tgttcgagcc gtgccgggta      2700
     gaagtcgaga cactaaccgt tgtaggcgtt gcctaaacga gattgagaca cttgctcatg      2760
     ttcttggctc ctgtccccat ggtgagaatt tgagaaacat acgccaccat acaattcgtt      2820
     ccattttggc tgccgcttta cgggatgttg gttttattgt tcatgaggag gttcagggtt      2880
     tggccactca gggtagcatt aggcgtattg atatcatagc catccgtaac aatacagctt      2940
     acattctcga ccccactatc cgcactgaga ctcatgcaga acaaccacgt gaggtagaca      3000
     tggaaaagag ggcgatctat gagcctacaa taccttatta taaagaaaaa taccatctat      3060
     caacaatcga ggttgtaggt ttaatggtgg gagctcgtgg cacaatccca tcccatttcg      3120
     cggaaatctg taaaaggttg ggtctttctt cctttatcat taaatcaata gcggtctcag      3180
     ctctcaaggg ttctattttg ctcttgagac atcatttata tggctgaata attgtgcctt      3240
     ttttttagaa aaattttaag tacaggtatt ttctagttgg gtcagtatac attcaaattt      3300
     tatacaattt tatatagtgc attgtttaga tgggtattgc attttttaca tattttaaat      3360
     ttataaatgt ttggtacgct ttgtcttatt tggcaccctt aaatttaagg aagctattaa      3420
     atttaa                                                                 3426
//
ID   Blag_6      repbase;    DNA;    INV; 3669 BP.
XX
AC   .
XX
DT   08-DEC-2020 (Rel. 25.12, Created)
DT   04-DEC-2020 (Rel. 25.12, Last updated, Version 1)
XX
DE   BLAG non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Blag_6.
XX
OS   Blattella germanica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blaberoidea; Ectobiidae; Blattellinae; Blattella.
XX
RN   [1]
RP   1-3669
RA   Zagoskina A., Firsov S., Lazebnaya I., Lazebny O. and Mukha D.V.
RA   .;
RG   Mukha D.V;
RT   "R2 and Non-Site-Specific R2-Like Retrotransposons of the German
RT   Cockroach, Blattella germanica.";
RL   Genes 11(10), 1-27 (2020)doi: 10.3390/genes11101202..
XX
DR   [1] (Consensus)
XX
CC   The analysis of previously published next-generation sequencing
CC   data from the B. germanica genome reveals a new type of
CC   retrotransposon (BLAG 1 - BLAG 6) closely related to R2
CC   retrotransposons but with a random distribution in the genome.
CC   Phylogenetic analysis reveals that these newly described
CC   retrotransposons form a separate clade. It is shown that proteins
CC   corresponding to the open reading frames of newly described
CC   retrotransposons exhibit unequal structural domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           252..3431
FT                 /product="Blag_6_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MISDSGGPSLPSNDGKTIALVSCKICGKSFTRHGINI
FT                 HIARSHRHSQDLIDIDKPTDSILSETVNFSPSDPIECQDNIHLNTNSSNNE
FT                 KVIRAVNNDEKDKSDNNIIKNTSSDIWCPYCSKVFKNLNGHIARSHPHIYR
FT                 KNITERYANASPCLQKTEINNNSGQLKINENKLEPWEKTFSEILNSEKDEV
FT                 KLDQKLDEFTLFLCNATSLCKGPVHPATKYYKARTTWRPNHEKSNFKTSNN
FT                 PQRHDRRLKEKRQNQYRYDLMQYYYYYRRKKAVQKIMHLSDYKRCPFSATD
FT                 VYDYFKETVGTENNNVLHDYSISSPLCNSIDEETIDYDCQYCTVTEKDIDQ
FT                 AMKGINLDTAPGPDRVLFKVVKELKCMKIISIIANIMLSWNYVPNSFQSGR
FT                 TILIFKSGDPNSLKNWRPITIFSILRRIIERALERKIRPFVELSTCQRGFI
FT                 STPGTFINSSLINSCLQKSKKEKGDCCITFLDVSKAFDSIGHKHIEMSLNS
FT                 TSIPSQLKSLVLSLVKNNSVGIELDATTRTKPINIEKGVAQGSPLSPLLFN
FT                 LSIDFIYRNLNDFQNASQYGYRLTEEVDNLIALGFADDIALISNNETSAVI
FT                 MIERVNQCLTEIGLNLNASKSKIINIKKGKLMNTTVTTLNDIKINSIQAEE
FT                 TMIYLGVTYNDEIILDKCSIITNLNRSISKLITSSLLKPDQKLNILNQYIW
FT                 PTLIYPLQCAPLCKLQLGFLQDIDKIVKNAVKEIVGLPCDTPDSMLYTSRK
FT                 YRGLGVMKATWEAFLQHINICNKLQVSSDPVIGFTRNFNNEIQESLDHLNI
FT                 SREEHPNVRSLRKKLREKEYENWKSLPHRGRGVAHFSEWTHSNTWISSKKG
FT                 LSSSQWTNAIKMDCNVIPVRSLPGRSEETRCRHCNESETLPHILGFCKKGE
FT                 LLRNNRHHKVRSAIAKLLLETGHFEIFEEIHCISTDGSTKRADIIAIDRKR
FT                 DLGYILDPTVRFEKDLSQAHLVNEEKKKHYQPCCKYLSEKYKINTWEVIGL
FT                 LFGSRGTITKFCVNILLHFGIKKKKSTGNSTCHTERFSTHRTFSSVWSHEY
FT                 LY*"
XX
SQ   Sequence 3669 BP; 1285 A; 662 C; 605 G; 1117 T; 0 other;
     attacgttca caagagctgt gctaagcttc aaaaaatgtg aaattcatcg ataagaattt        60
     aattcagtgc tgtgaaaata ccgttggtaa ttcgatcagt gaaggtgagt gctgtgtaaa       120
     agatgacgtc gcgaatgcga ccccgctgtt acttaaacat cattatactt gttgatatct       180
     tcaaactact acaatttata ttggattttc tccgtgaaga ctgacttctc ttcttagaca       240
     ttgtgttact catgatatca gattctggag gaccttcgtt accatctaat gacggtaaga       300
     ctattgcttt agtctcttgc aagatatgtg gaaaaagttt tactagacat ggaattaata       360
     tccatattgc tagaagccat agacattccc aagatttgat agacattgat aagcctactg       420
     attcaatttt atcagagact gtaaacttct caccttctga ccctattgaa tgccaggata       480
     atatccatct taatactaat tcatctaaca atgagaaagt cattcgtgca gtcaataatg       540
     atgagaaaga taaaagtgat aacaatatta ttaaaaatac atcttcagat atctggtgtc       600
     cttactgtag taaagtattc aaaaatttaa atggccatat agcacgatca catccccata       660
     tttatagaaa aaatattacc gaacgttatg ccaatgcttc tccttgtctg caaaaaacag       720
     aaattaataa taatagcggt caacttaaaa taaatgaaaa taagttagag ccttgggaaa       780
     aaacattctc tgaaattctt aatagcgaaa aagatgaagt gaaactagac cagaagttag       840
     atgaatttac cttatttcta tgcaatgcca cctctctgtg caaaggtccg gtacatcctg       900
     ctacaaagta ttataaagct agaactacat ggagaccaaa tcatgagaag tctaatttta       960
     aaacatccaa taatcctcaa agacatgata ggcgtttgaa ggaaaagaga caaaatcaat      1020
     accgatatga tcttatgcaa tactattatt attaccgaag aaaaaaggca gtgcaaaaaa      1080
     tcatgcatct ttcagattac aaacgatgtc cattctctgc aacagatgtt tatgactact      1140
     tcaaagaaac agtgggaaca gaaaataata atgtcttgca tgattattca atctcatctc      1200
     ctttgtgcaa ttctatagat gaggaaacaa tagactatga ttgtcagtat tgtactgtaa      1260
     cagaaaaaga cattgatcaa gcaatgaaag gaattaatct tgatactgcc cctggccccg      1320
     atagggttct tttcaaggtc gtcaaagaac ttaaatgcat gaagatcatc agcataattg      1380
     ctaacatcat gttaagctgg aactatgtgc ccaactcttt tcaatcgggt cgcactatct      1440
     tgatctttaa atccggtgat ccaaattcat tgaaaaactg gagaccaata acaattttct      1500
     caattctaag aagaattata gaaagagcat tagagagaaa aatcagacca tttgtggaat      1560
     tatcaacttg tcagcgcggt tttatatcaa caccagggac ttttataaat tccagcttaa      1620
     taaatagttg tcttcagaaa tctaagaaag aaaagggtga ctgttgtatt acttttcttg      1680
     atgtatctaa agcgtttgac tctattggtc acaagcatat tgaaatgagt ttgaactcta      1740
     catcaattcc aagccaatta aaatccctag ttctttctct agtaaaaaat aactcagttg      1800
     ggattgagtt agatgcaaca acgcgcacta agccaataaa tatagaaaaa ggagtagccc      1860
     aaggttcccc attatctcct cttctcttca acttgtccat tgattttatt tatcgcaact      1920
     tgaatgattt tcagaatgca tctcaatatg gttatcgcct taccgaagag gtagacaact      1980
     taattgctct tggtttcgca gatgatattg ctttaatatc taataatgaa acatctgctg      2040
     ttattatgat tgaaagagta aaccaatgcc taacagaaat tgggctcaat ttaaacgcta      2100
     gtaaatctaa aattattaat atcaagaaag ggaaattaat gaataccaca gttacaacat      2160
     tgaatgacat taagatcaat tctatacaag cggaggagac catgatatat ttgggagtta      2220
     catataatga tgaaattata ttagataaat gttctatcat aactaaccta aatcgtagca      2280
     tatcaaaact tatcacctct tcgcttctga aaccagacca aaaactcaac atcttaaatc      2340
     aatatatatg gccaactcta atttatccac ttcaatgtgc tcctctctgc aaacttcaac      2400
     ttgggttttt acaagatatt gataaaattg taaaaaatgc agttaaggaa attgtaggac      2460
     ttccttgtga cactcctgat tcgatgttat atacctctcg aaaatatcga gggttaggtg      2520
     tgatgaaagc gacatgggaa gctttcctcc aacatattaa catctgtaat aaactgcaag      2580
     tgtcttccga tcctgttatt ggattcacaa gaaattttaa taatgagata caggaaagtt      2640
     tagatcatct taacataagc agagaagaac atcccaatgt ccgctctctt cggaaaaaac      2700
     tcagagaaaa ggaatacgaa aactggaaga gtttgcctca tcgtggccga ggagtagccc      2760
     acttttcaga atggactcat tctaacacct ggatttcttc aaagaaaggt ttgtcctcct      2820
     ctcagtggac aaatgcaatt aaaatggatt gtaatgtcat tcctgtccgt agtctcccag      2880
     gcagaagcga agaaacccgt tgccgtcatt gcaacgagtc agaaaccctt ccccatattc      2940
     ttggtttttg caaaaaggga gaattactgc gtaacaacag gcatcataag gtcaggagtg      3000
     ccattgctaa acttcttcta gagacaggcc attttgaaat atttgaagaa atacattgca      3060
     tatccactga cggttctacg aagcgtgctg acatcatcgc aattgataga aaacgtgatt      3120
     taggatatat actggatccc acggtcagat ttgagaaaga cctatctcaa gctcatctag      3180
     ttaacgaaga gaaaaagaaa cactaccaac cgtgctgcaa atacctttct gagaaatata      3240
     aaatcaacac ctgggaagta ataggtttat tatttggctc acgtggtaca ataaccaaat      3300
     tttgcgtgaa tatattacta catttcggca taaagaaaaa aaagtctaca ggaaattcta      3360
     cttgccatac tgagagattc agtacacatc gtacattttc atctgtatgg tcacatgaat      3420
     atctatactg aataaataaa ttatccagtt ataagaaagc tgcctttttc acattttaat      3480
     ataaacaaaa ttcataacag ttatttattt tttttttctt tatttattaa ttttttcagc      3540
     aaaagaaaat taatatccct aatctaagta cctattataa aattattgta tttattattg      3600
     attggcaggc tgtacctttt ggtaaccctt aataaagggc agctatccta tttttggatt      3660
     ttctctctc                                                              3669
//
ID   BLASTOPIA_I repbase;    DNA;    INV; 4481 BP.
XX
AC   Z27119;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   BLASTOPIA_I is an internal portion of the BLASTOPIA LTR
DE   retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag; pol;
KW   Gypsy superfamily; internal portion; BLASTOPIA_I; BLASTOPIA_LTR.
XX
NM   BLASTOPIA_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4481
RA   Frommer G., Schuh R. and Jackle H.;
RT   "Localized expression of a novel micropia-like element in the
RT   blastoderm of Drosophila melanogaster is dependent on the
RT   anterior morphogen bicoid.";
RL   Chromosoma 103(2), 82-89 (1994).
XX
DR   GenBank; Z27119; Positions     647    5127.
XX
FH   Key           Location/Qualifiers
FT   CDS           485..4480
FT                 /product="BLASTOPIA_I_1p"
FT                 /translation="MFTRTPPTNKKLNTDQIQAILENESEDESRKEKMNEE
FT                 DQKLAPVGEAEAKKQNKDASAKVEEKFEQMMNTLTQSMLAKSKQEGQVIIA
FT                 AEKFEKVVSDCDGKSIPIKKWFEIFEKNAEAYELSEKQKYVQARSKMIGSA
FT                 ELFLESECVSGYTELKELLIEEFSGSYNSAVIHKKLQDRKKKREETLHDYL
FT                 LQMKKIAALGEVETVALITHIVNGLDIKKEYKGAMLRCKTLKELKQEFEIY
FT                 ESLNIVDKPNIQPKPKQITQGVKADHCFNCGSREHKRKDCTLPTKCFSCNQ
FT                 EGHISSKCPEKVNSMRIHVDSARTKPVIINGIIINCLVDTGSDVTIIKEAI
FT                 FKKMKDVDLNRTATVLRGLGNASTQPIGCFRALIKTDQVEASHNVLVVHDS
FT                 KFSCDGIVGHDFISKFRLICSAEGYTFLDLEADKKQAVEYSQMFNICEESS
FT                 FTVAPQYREDVERMIERTYETPPKQIKQCPVELKIIPDGVIKPFRHGHTRL
FT                 SEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKL
FT                 NTMVLMDCFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAVEEASKPYTAF
FT                 VTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYA
FT                 ATPEECMEKTEMVLKRAAEFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPG
FT                 KEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFIPGYAQIARPLTDLLKKDA
FT                 IFNIGPVEQQSVNKLKEILVNEPVLRIYSREAETELHTDASKDGLGAVLLQ
FT                 KFEGSFHPVCFWSRKTTKAESNRHSYYLEVKAAYLALKKFRHYLLGVPFKL
FT                 VTDCVAFKQTTKKADVPREVGPWILYMQDFNFQPEHRAGERMRHVDFLSRH
FT                 PQACMMITSELTARIKKSQQNDDSIRAILEILKDRLFQPYKLKGGLLYSMV
FT                 NGNELLVVPALMEREVIQSAHEVGHLSLQKTMHSIQQQFFYFLIWEYKVKK
FT                 LISNCIKCIIHSKKLGKQEGYLNCIDKGDAPLHTLHIDHLGPMDSSAKQYK
FT                 YILATVDAFSKFVWLFPTKSTGQEEVVKRLTDWSNIFGFPKRIVSDKGTAF
FT                 TSGAFEQFMSSHNVEHVCTTTGVARGNGQIERVNRLILAIISKLSSDEPSK
FT                 WYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMYTRVEDRLLELLQEEVVC
FT                 QFNEDRYEMRQLVKRNIEQAQKDYKRNYDKKRRAEYKYKAGDLVAIKRTQF
FT                 VAGRKMASGYLGPYEVTGVKDNGRYDVKKAANVEGPNVTSTSCDNMKLWKY
FT                 IAENADLLSSGSDDDDQEGR"
XX
SQ   Sequence 4481 BP; 1523 A; 837 C; 1022 G; 1099 T; 0 other;
     tgggggctcg tccagtccta aatcggttat atgaaggtgc agttgtttaa agaaaaaaga        60
     cattgttgtg tgcgtgggta tagtctttaa aacgttgtaa agttgtggct atatctattg       120
     catttaaagt tggaaaaatc agttgtacag attttgtttg aacacaagtc ggtaaaagtc       180
     gggaaagctg ctagagagaa ctgataaagt tgaaattgtc gtgtgcgtgg atttagtctt       240
     taaagttgta aagttatggc tacgtctact gcattgaaag ttgaaaaaat cgattgaact       300
     catacagact caagtcgttt tgctgttgtg gaatttaaaa caattaaatt gcaaaggtgg       360
     tgaaattcgt ttctaacgaa aatcaaaatt tgtcttttaa ccggtggcgc cgtctgcaaa       420
     atcgactacc gtcgcgccgt tagaacattg tcgttgtttg ctggtgttag tgccttgtcg       480
     cggaatgttc acacgtacac cacctacaaa taaaaaactt aacaccgacc aaatacaagc       540
     aattctagag aacgaaagcg aggacgaaag cagaaaagaa aaaatgaacg aagaagatca       600
     aaagttggcg cctgtaggag aagcagaggc aaagaagcag aataaagacg ctagtgctaa       660
     agtcgaagag aaatttgaac aaatgatgaa tactctaacc cagagcatgt tggcaaaatc       720
     taaacaagag gggcaagtaa ttatcgctgc agaaaaattt gaaaaagttg taagtgactg       780
     tgatggcaaa tcaattccta ttaaaaaatg gtttgaaatt tttgagaaaa atgccgaggc       840
     atatgaactt tcggagaaac aaaaatatgt tcaagccaga agtaagatga ttggatcagc       900
     agaacttttc ttagaatctg aatgtgtcag tggatacact gaactcaaag agttactaat       960
     tgaagaattt tcaggcagct ataatagcgc cgttattcac aaaaagttgc aagacaggaa      1020
     gaagaagagg gaggaaactc tacacgacta tttgttacaa atgaagaaaa tagcagcctt      1080
     aggtgaagtt gaaacagttg ctttgataac tcatatcgta aacggcctcg acattaaaaa      1140
     ggagtataag ggtgctatgc tccgttgtaa aactcttaag gaattaaagc aagaattcga      1200
     aatctacgag agtctgaata ttgttgacaa gccgaatatt caaccaaaac caaagcaaat      1260
     tacacaaggt gtaaaagcag atcactgctt caactgtggt tcgagggaac acaaacgaaa      1320
     ggattgtaca cttcctacca aatgtttcag ctgtaatcaa gagggccata tctcaagcaa      1380
     gtgtccggaa aaagtaaaca gcatgcgcat tcacgttgat agtgcacgaa caaagccagt      1440
     aatcataaat gggattatca tcaactgtct ggtggacaca ggatcagatg tgaccataat      1500
     taaagaagct atattcaaga agatgaaaga tgttgattta aaccgcactg caacagtatt      1560
     gcgaggtttg ggaaatgcct caacacagcc gattggatgc ttcagagcat taatcaagac      1620
     cgaccaggtg gaagcaagcc acaacgtttt agtcgtccac gattctaaat tcagttgcga      1680
     tggaatagtg ggacacgatt ttatcagcaa gtttcgtctt atctgtagtg cagaaggcta      1740
     tacttttctt gacctggaag cagataaaaa acaagcggtt gagtattccc aaatgtttaa      1800
     tatttgtgaa gaatcttctt ttacagttgc accacaatac cgagaagacg ttgaacgcat      1860
     gatagagaga acatacgaaa caccacccaa gcagataaag caatgtccag tcgaactcaa      1920
     aattattcct gatggcgtga ttaaaccctt tcgccatgga cacacccgac tatctgaaga      1980
     agaagctata gctgtaaaga agcaggtaga ggaatgggtc gagcagtcaa tcgtccgtaa      2040
     atctacatca aatgttgcca gtcgcatagt cgttgtcagg aaaaaggatg gtaccctacg      2100
     cgtttgcgtg gactatagaa aattgaacac catggttctg atggattgtt ttccggtacc      2160
     cataatggag gaggtgcttg aaaaactgca gagtgccaaa tggtttacaa ccatggactt      2220
     acagaacgga ttttttcatg tggccgtaga agaagccagc aagccgtaca cagcatttgt      2280
     tacccgagaa ggcttattcg agtttaacaa agcgcccttt ggttttaaga attccccagc      2340
     agcgtttata cggttcgttc aatttatttt tcaagaacta atcaattcca atataatgca      2400
     gctatatatg gatgacataa ttgtatatgc cgctacccca gaagaatgca tggaaaagac      2460
     ggaaatggta cttaagagag ctgcagaatt tggtctaaaa ataaaatgga agaagtgcaa      2520
     ctttatgcag aggcgaattc atttcctggg acatattatc gaaggtggac aaatatgccc      2580
     tggaaaagag aaaacatcag cagtgaattc ctttggaaca cctcagaatg taaaagccgt      2640
     tcaaggattt ctgggtctca caggattctt cagaaaattc atacctggat acgcccaaat      2700
     tgcgagacca ctgacggacc tattaaaaaa agatgccatt ttcaacattg gaccagtaga      2760
     gcagcagtcg gtgaataagc tgaaagagat tctggtaaac gaaccagtat tgaggatcta      2820
     ctcacgagaa gcagaaaccg aacttcatac agatgcctct aaggacgggt taggagccgt      2880
     tttattgcag aagttcgaag gcagttttca cccagtctgc ttttggagca gaaaaactac      2940
     aaaagccgaa tcaaatcgtc atagttatta ccttgaagta aaagccgcat acttagctct      3000
     gaaaaagttc agacactatt tattgggagt ccctttcaag ctcgtcacgg actgtgtcgc      3060
     atttaaacag acaacaaaaa aagcagatgt cccaagagaa gttggcccat ggattctcta      3120
     tatgcaggat tttaattttc aacccgaaca tcgtgcagga gaaagaatga gacacgttga      3180
     ttttttaagc cgccatcccc aagcatgcat gatgataaca tccgagttga cagcacgtat      3240
     taaaaagtcg cagcagaacg atgattcaat tagagcaatc ctggaaattc taaaagatcg      3300
     tctattccaa ccctacaagc taaaaggtgg cctgttgtat agtatggtca atggcaatga      3360
     actactggtt gtccctgcac taatggagag ggaggtgatt caaagcgcac atgaagttgg      3420
     ccatttgtcg ttgcaaaaga cgatgcatag catacagcag caattttttt atttcctcat      3480
     ttgggaatac aaggtaaaaa agctaatttc taactgtata aaatgtatca tccacagcaa      3540
     aaagttggga aagcaggagg gatatctaaa ttgcatagat aaaggagacg caccgttgca      3600
     cacactacac atcgatcatt tggggccaat ggattcatcg gccaaacagt ataaatacat      3660
     tctggcaaca gtcgatgcgt tttcaaagtt tgtctggtta ttcccaacca aatcaaccgg      3720
     acaggaagaa gtggtcaaga ggctgaccga ctggtcaaac atttttggtt tccctaagcg      3780
     aattgttagc gacaaaggaa cggcctttac gagtggtgcg ttcgaacaat ttatgagcag      3840
     ccataacgtg gaacacgtct gcacaactac tggagtggcc agaggcaacg gccagataga      3900
     acgagtaaat cgtttaattt tggcaataat atcaaagctg tcttcagacg aaccgtcgaa      3960
     gtggtacaaa tatgtgcctg aggtacaaaa ggcgatcaac tgtcacgtgc attcatcact      4020
     gaagctgtca ccatttgagg tcatgtttgg caccaagatg tacacccgag ttgaggatcg      4080
     gttactggaa ctgctccaag aagaagtggt ctgtcaattc aacgaggacc gctatgagat      4140
     gagacagctg gtaaaacgca acatcgagca ggcgcagaag gactacaagc gcaattacga      4200
     caaaaagcgc cgagctgaat acaaatacaa agcaggtgat ctggttgcaa ttaaaaggac      4260
     ccaatttgta gctggccgca agatggcaag cgggtattta ggtccatacg aagtcacagg      4320
     ggtcaaagac aatggcagat atgacgttaa aaaagcagca aacgtcgaag gacccaatgt      4380
     cacatccacc agctgtgaca acatgaagtt gtggaagtac atagccgaaa atgcagacct      4440
     attgtcatcc gggtcggatg atgatgatca ggagggccga a                          4481
//
ID   BLASTOPIA_LTR repbase;    DNA;    INV; 275 BP.
XX
AC   Z27119;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   BLASTOPIA_LTR is a long terminal repeat from the BLASTOPIA LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; BLASTOPIA_I;
KW   BLASTOPIA_LTR; Long terminal repeat.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-275
RA   Frommer G., Schuh R. and Jackle H.;
RT   "Localized expression of a novel micropia-like element in the
RT   blastoderm of Drosophila melanogaster is dependent on the
RT   anterior morphogen bicoid.";
RL   Chromosoma 103(2), 82-89 (1994).
XX
DR   GenBank; Z27119; Positions     372     646.
XX
SQ   Sequence 275 BP; 98 A; 52 C; 60 G; 65 T; 0 other;
     tgtaacatga gtaaggctga aggctggcaa caacccggtt ggcagcgctg ttgagcagca        60
     acatgattgt cggaaatcca agttatcgac aatcagtcat cgaaggacga tcgcaggcag       120
     cagtagaggc gagtggaagt cagcgttgca gtcagtcgag ttctcagcag cagtcgttcg       180
     gtccacaaac taagaaatac tttatataat taccgcattt agaattaaac taataattaa       240
     attaataata aacaataata ataaacaatc ttaca                                  275
//
ID   BLOOD_I     repbase;    DNA;    INV; 6613 BP.
XX
AC   .
XX
DT   20-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   BLOOD_I is an internal portion of the BLOOD LTR retrotransposon -
DE   a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag; Retrovirus; Gypsy superfamily;
KW   protease; internal portion; TABOR group; BLOOD_I; LTRBLD_DM;
KW   BLOOD; BLOODI.
XX
NM   BLOOD_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-681
RA   Wilanowski M.T., Gibson B.J. and Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [2]
RP   1-6613
RA   Kapitonov V.V. and Jurka J.;
RT   "BLOOD_I.";
RL   Direct Submission to Repbase Update (06-NOV-1998).
XX
DR   [2] (Consensus)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as BLOOD_LTR.
CC   All copies of BLOOD were found in chromosome 2; they have 4 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1, DM412 and TABOR retrotransposons found in Drosophila.
XX
FH   Key           Location/Qualifiers
FT   CDS           1465..2715
FT                 /product="BLOOD_I_1p"
FT                 /translation="MEWLNLTISINNIRDAFDKSYKCINKTALIKTQTLIF
FT                 HIKVLITQYNTLQNLIVTNKSKLTEEHKVQCFKVLSSFGKRLHNTSVRHSI
FT                 IIEVPTELTKIAEFDESQLRDLDESQPLEDLDIESDIESIEELKFNTVQPN
FT                 TRNMANALEAQRAYVKQVSATVPEFDGKKLHLNRFVTALKLTDLTKGDQET
FT                 LAVEVIKTKIIGPLNYKVEHATTIQAIITILQANVKGESPDVIKAKLINAQ
FT                 QRGKTASQYVTEIDSMRKQLEAAYIDGGLDADNADKFATKESISAMTKNCA
FT                 NEALKMILTAGTFSTFNDAMEKYLHCSTEITGNSNTVLFYNGNNRRGNYNA
FT                 YYRGRGRNNYNHNYNQNYNQGYNNNNRGRGGYRGHGNNRDGGNRRGNQSQN
FT                 NNNNRNVRNVQSENSQTPLSDQQ"
FT   CDS           2673..6332
FT                 /product="BLOOD_I_2p"
FT                 /translation="RTIGKQPDPLKRSTVKVFKVNLNLSIFIKTKNHETNT
FT                 VLTLLIDTGAEISLLKAKAKEYNNINFSNISNITGIGQGTIQSIGTVDLDI
FT                 RIQDVLVPHEFHVVPENFPIPCDGIIGIDFIKKYNCVLEFQNNKDWFTIRP
FT                 NNFSRQISVPITHNLDSNTLLLPARCEVIRQVKLLTNEKTVVVPNQELQPG
FT                 IIVASTIADSKNALIRIINTNNKDAIIDSAKIKCESMKDYDIFTTPVEKEN
FT                 RTEEILKQLRFPKQFNNELTKLCTEFSDIFGLETEPISANNFYKQKLRLGE
FT                 KTPVYIKNYRMADSQKPEIARQVKKLIDDGIVEPSMSEYNSPLLLVPKKPL
FT                 PNSTEKRWRLAVDYRQINKKLLSDKFPLPRIEDILDQLGRAKYFSCLDLMS
FT                 GFHQIELEKRYRDITSFSTANGSYRFTRLPYGLKVAPNSFQRMMTLAFSGL
FT                 EPSQAFLYMDDLVVIGCSEKHMLKNLTNVFELCRRHNLKLHPGKCSFFMKE
FT                 VTYLGHKCTDKGILPDDTKYEVIEKYPIPTDADSARRFVAFCNYYRRFIKN
FT                 FSDHSRHLTRLCKKNVQFEWTAECNDAFEYLKTELMKPTLLQYPDFGKEFC
FT                 ITTDASKQACGAVLTQDHNGQQLPVAYASRMFTQGESNKSTTEQELTAIHW
FT                 AINHFRPYIYGKHFMVKSDHRPLSYLFSMKNPSSKLTRMRLDLEEYDFTVE
FT                 YLKGKDNHIADALSRITIKDLKTINREILKVTTRSKAKQENSCKDEAIVKI
FT                 QEEKEQTIEKPKVYEVVNNNDTKKYVLIKIDKHKCLLKRGKTIVSRFDVDD
FT                 LYSNETFDLNQFFQRLISKAGMHKITKMRISPSEQMFQFVSLNEFKIKGNR
FT                 VLEKVELAILQKVIIIDKNDEAQIKEILTKFHDDPIEGGHTGISRTQSKIK
FT                 RFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPLTLMPTPATAFDTVLID
FT                 TIGPLPKSEDGNEYAVTIICDLTKFLVTIPTPNKSAKTVAKAIFELFVLKY
FT                 GPMKTFITDQGTEYKNSLMNELCKYMHIENLTSSAHHHQTLGTIERSHRTF
FT                 NEYIRSYISVNKSDWDIWLPYFTYCFNTTPSIVHDYCPYELVFGRLPRQFK
FT                 DFSKINKIDPIYNLDDYSKELKCRLELSYNRARRMLEKAKADRKLRYDRNT
FT                 NNFELKIGDKVLLRKETGHKLDKRYEGPYDVVDIGINDNITIKTGSKKQQI
FT                 VHKDRLKKHK"
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 other;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   BLOOD_LTR   repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   20-APR-2000 (Rel. 5.03, Created)
DT   20-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   LTR from the BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; BLOOD_I;
KW   BLOOD_LTR; BlOOD LTR-retrotransposon; DMBLDLTR; LTRBLD_DM;
KW   Long terminal repeat.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   399-1
RA   Bingham M.P. and Chapman H.C.;
RT   "Evidence that white-blood is a novel type of
RT   temperature-sensitive mutation resulting from
RT   temperature-dependent effects of a transposon insertion on
RT   formation of white transcripts.";
RL   EMBO J 5(12), 3343-3351 (1986).
XX
RN   [2]
RP   1-399
RA   Wilanowski M.T., Gibson B.J. and Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [3]
RP   1-399
RA   Kapitonov V.V. and Jurka J.;
RT   "BLOOD_LTR.";
RL   Direct Submission to Repbase Update (NOV-1998).
XX
DR   [3] (Consensus)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOOD_I [2,3]. There are several identical
CC   copies
CC   of the LTRs in the drosophila genome.
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 other;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   BLTR_SS     repbase;    DNA;    INV; 276 BP.
XX
AC   X70645;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S.soubrense B LTR (long).
XX
KW   LTR Retrotransposon; Transposable Element; BLTR; BLTR_SS;
KW   Interspersed repeat; putative transposable element;
KW   Repetitive sequence.
XX
OS   Simulium leonense
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Simuliidae; Simulium.
XX
RN   [1]
RP   1-276
RA   Flook K.P.;
RT   "BLTR_SS.";
RL   Direct Submission to Genbank (19-JAN-1993)P.K. Flook,
RL   Zoologisches Institut der Universitaet Basel, Rheinsprung 9,
RL   4051, Basel, SWITZERLAND.
XX
RN   [2]
RP   1-276
RA   Flook K.P.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X70645; Positions     366     641.
XX
SQ   Sequence 276 BP; 96 A; 42 C; 42 G; 96 T; 0 other;
     gagctttttg agctttcatc gtgtggtgag gctgagtcag caatttttta atgaaagtta        60
     gatggcgcgg tagataaagt tttcaatagg gtaaacgtga gcaagatgaa tcatattatc       120
     aaaatattta gtaaacatac aaacaaacat attcaaactc aaatacctga tgaaattatt       180
     ttaaaaattt tcaagtactt tttctatcaa tgatccaatt taccccaatt ttaccataga       240
     caattgcgct tttcgagctt tttcataaaa actttt                                 276
//
ID   BM1         repbase;    DNA;    INV; 445 BP.
XX
AC   X03547;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   22-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Bombyx mori Bm1 repetitive DNA element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Repetitive sequence; Bm1 repetitive sequence; BM1.
XX
NM   BM1.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-445
RA   Adams S.D., Eickbush H.T., Herrera J.R. and Lizardi M.P.;
RT   "A highly reiterated family of transcribed oligo(A)-terminated,
RT   interspersed DNA elements in the genome of Bombyx mori.";
RL   J. Mol. Biol 187(4), 465-478 (1986).
XX
DR   GenBank; X03547; Positions       1     445.
XX
SQ   Sequence 445 BP; 126 A; 96 C; 104 G; 119 T; 0 other;
     gaactcgtcg tggcctaaag gataagacgt ccggtgcatt cgtatatagc gatgcaccgg        60
     tgttcgaatc ccgcaggcgg taccaatttt tctaatgaaa tacgtactca acaaatgttc       120
     acgattgact tccacggtga aggaataaca tcgtgtaata aaaatcaaac ccgcaaaaat       180
     tataatttgc gtaattactg gtggtaggac ctcttgtgag tccgcacggg taggtaccac       240
     cgccccgcct atttctgccg tgaagcagta atgcgtttcg gtttgaaggg tggggcagcc       300
     gttgtaacta tactgagacc ttagaactta tatctcaatg tctgtggcgc atttacgttg       360
     tagatgtcta tgggttccag taactactta acaccaggtg ggctgtgagc tcgtccacac       420
     atctaggcaa taaaaattaa aaaaa                                             445
//
ID   BM2A        repbase;    DNA;    INV; 318 BP.
XX
AC   X70929;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Bm2a repetitive element.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; BM2A;
KW   Repetitive sequence.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-318
RA   Ichimura S. and Mita K.;
RT   "Direct submission.";
RL   Unpublished.
XX
RN   [2]
RP   1-318
RA   Ichimura S.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (02-FEB-1993). S.
RL   Ichimura, National Institute of Radiological, Science, Anagawa.
XX
DR   GenBank; X70929; Positions     274     591.
XX
SQ   Sequence 318 BP; 79 A; 91 C; 73 G; 70 T; 5 other;
     cacacatcat tacggatcct cccgacccat taacggtgct tttaagtacc acaagcacca        60
     gtcaccgtcc tcgttgaacc cgtcgcttgc gacgaagggc ttgacgagcg aatgaaccca       120
     cagacacagc ccactgagtt tctcgccgga tcttctcagt ggntcgcgtt tccganccgg       180
     tagtatattc tgcgaagcgc tgcttttgct agggctagtg taagcaacac tccggtttga       240
     gccccgtgag ctcacctaca tgttagggcg antgnanaat cagcctctca agaccatcag       300
     cataggtagg aaaaaaaa                                                     318
//
ID   BMC1        repbase;    DNA;    INV; 5091 BP.
XX
AC   AB018558;
XX
DT   13-AUG-1999 (Rel. 4.07, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon BMC1 DNA, complete sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   endonuclease and reverse transcriptase-like protein;
KW   Gag-like protein; ORF1 and ORF2; BMC1.
XX
NM   BMC1.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Abe H., Ohbayashi F., Shimada T., Sugasaki T., Kawai S.
RA   and Oshiki T.;
RT   "A complete full-length non-LTR retrotransposon, BMC1, on the W
RT   chromosome of the silkworm, Bombyx mori.";
RL   Genes Genet. Syst 73(6), 353-358 (1998).
XX
RN   [2]
RP   1-5091
RA   Abe H.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (11-OCT-1998). Hiroaki
RL   Abe, Tokyo University of Agriculture and Technology, Department
RL   of Biological Production, Faculty of Agriculture; 3-5-8
RL   Saiwai-cho, Fuchu,, Tokyo 183-8509, Japan
RL   (E-mail:wfem@cc.tuat.ac.jp, Tel:+81-42-367-5848,
RL   Fax:+81-42-360-8830).
XX
DR   GenBank; AB018558; Positions       1    5091.
XX
CC   ORF1: 313-1959 (putative DNA-binding domain;
CC   ORF2: 1963-4845 (endonuclease and reverse transcriptase).
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1956
FT                 /product="BMC1_1p"
FT                 /translation="MDSTIDLFAEFLRLRYPTLSVEFLEFKANHVANSEAV
FT                 SVAPAAPVSPILASKAPASIAAVSVPALHSSAAHVASTRSSAASVAPAPSS
FT                 APERLSMASVATVNPAPSKTPACGSPAPSSSSDSESNMEVDPSPAPSTDGF
FT                 TVVQKGKRRAAEARAPAAAKVSRATNASRLRPPTPVAPPARATPSPRPVEQ
FT                 KKIQTPPPVILQEKAAWERVSLALKAKNINFTNARNLANGIQIKVQTPDDH
FT                 RALSSYLERISFHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVN
FT                 SVHRMHTGRGREPYNMVLVALQPTPEGKQIFNIRTVCRLSGIAVEAPHKKG
FT                 TPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVL
FT                 CQTQGHPANYRGCPRAPKINRRVARQNRLRASHPDTKASAPSVSQAKPAFV
FT                 PAPVPSGSAWAKPLPYTNTATTPSSAIRPAPAIRPSPANCPPTASDNLALA
FT                 IDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLR
FT                 R"
FT   CDS           1963..4842
FT                 /product="BMC1_2p"
FT                 /translation="MAYKSRLKPLSVTIGFFNAYGLANQRDQVCDFLRDHQ
FT                 IDIFLVQETLLKPARRDPKIANYNMVRNDRRTARGGGTVIYYRRALHCIPL
FT                 DPPALVNIEASVCRISLTGHAPIVIASVYLPPEKIVLSSDIEALLSMGSSV
FT                 ILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIIAPLTPTHYPLNIAH
FT                 RPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRSPDSVPVTRTVV
FT                 DWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQ
FT                 VVAEDFLHRFKLPDDIGELLRAKNASIRAYDRYPTVENRIRMRALQRGVKS
FT                 RIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAA
FT                 FDDDEKAELLADTLQTQCTPSIQSADPVHVELVDSEVERRASLPPSDALPP
FT                 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANC
FT                 IFPAVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDF
FT                 VSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVA
FT                 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPL
FT                 TAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIAS
FT                 KLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPI
FT                 TLFGLPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKR
FT                 SKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVG
FT                 APWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPN
FT                 PDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGNRTRRTRQR
FT                 GRRAA"
XX
SQ   Sequence 5091 BP; 1182 A; 1604 C; 1166 G; 1139 T; 0 other;
     cattccgatc caagcactcg ccgtgtgctg acgtgctcat tgttcgttcg atcgcccgac        60
     ctcggttcgt ggcacatctg gcgtccaagt gttttctcgg aagttactac ctgtgctaat       120
     tgcgtcgcac cgccgtttgt gaacgggcgg acccctaaat tcctggaatt cgttcggcaa       180
     cttagtggcc cgtttgtaag cggacggttg tgtgccgtaa ttaatcgtga ttattataat       240
     attggggcct cgccgtaagg cgagtgtgtt taaagtcccg gggtagcccc ccctgggcac       300
     gtaatagtta caatggactc cacgatcgat ctgttcgcgg aattcctccg tctgaggtac       360
     ccgacattat cggtcgaatt tttagaattt aaggccaatc acgtcgcgaa ctcagaagcg       420
     gtctccgtcg cgcccgccgc tcccgtgtct ccaatactcg cgagcaaagc tcccgcgtcg       480
     atcgctgcgg tctcggttcc agccctgcac tcatccgcag cacacgtcgc gtccacgcgt       540
     tcatccgcgg cctccgtcgc gcccgcgccg tcctctgccc ccgagcgatt gtccatggcc       600
     tccgtcgcga ccgtcaaccc tgcgccctct aaaacgcccg cctgcgggtc gcccgcaccc       660
     tcctcttcat ccgactcgga gtcgaacatg gaggtcgatc cttcccccgc cccctcgact       720
     gatggattca cagtagtcca aaaaggtaag aggcgcgctg cggaagcccg agctcccgcg       780
     gccgccaaag taagcagagc cacgaacgcg tcgcgcctcc gtccaccgac ccccgttgct       840
     ccccctgccc gtgctacacc gtcgccgcgt ccggtagaac aaaagaaaat ccaaacccct       900
     cccccggtaa tccttcaaga gaaggcagcc tgggaacgag tttccctggc ccttaaggcc       960
     aaaaatatta atttcacgaa tgcccgtaac ctcgcgaacg gcattcaaat taaggttcaa      1020
     acacccgacg accatagggc cctctcttct tacctggagc gtataagttt ccatacgtat      1080
     acgctccagg aggagcgcga acttcgtgcc gtcatacgtg gcatccctaa agagttggat      1140
     gccgaactcg tcaaggccga ccttctggaa caaggcctac cagtaaattc agtgcaccgc      1200
     atgcacaccg gccgcggtag ggagccatat aatatggttc tagtcgccct ccagcctacc      1260
     cccgagggta agcaaatttt taacatacgg accgtctgta gactctccgg tatcgccgtc      1320
     gaagcccccc ataaaaaagg cactcctagc cagtgccata actgtcaact gtacgggcat      1380
     tcttcccgta actgtcacgc gcgcccccga tgcgtcaagt gtttaggcga tcacgctacg      1440
     gccctatgca ctcgcgatca aaaaaccgcg acggaaccgc ctagctgcgt cctgtgtcaa      1500
     acacagggtc accccgcaaa ttaccgcgga tgcccccgag ccccgaaaat aaatcgccgc      1560
     gtcgcccgcc aaaaccgcct ccgagcttct cacccagaca ccaaagcctc ggcaccctct      1620
     gtgtcgcagg ctaagccagc gttcgttccg gcgccggtgc ccagtggttc ggcctgggcg      1680
     aaaccgctgc cgtacacgaa cacggctaca actccctcct ccgcgattcg tcccgccccc      1740
     gcgatacgcc cctcccccgc gaattgccct ccgacagcgt ccgacaatct cgctctagcg      1800
     atcgacttct ttcaatcgat taactttgag cgcgttaacg ctttaggtga cgccatccgc      1860
     gccgcctcca ctgcacagca cttcatcgcc gttgtgcaag aatacgccga cgtatacgcg      1920
     tcgttaaata cgtacgtcct cccctcactc cgccggtaat caatggcgta caaaagtagg      1980
     ctgaaacccc tatccgtaac gataggattt tttaacgcat acggtctcgc aaatcaacgt      2040
     gatcaggttt gtgatttttt gcgtgaccat caaattgaca tatttttagt acaggagact      2100
     ctacttaagc ccgcgcgccg cgaccctaaa atcgcgaact ataacatggt taggaacgac      2160
     aggcgcactg ctcgtggtgg tggtaccgtc atctactaca gaagagcctt gcactgcatc      2220
     ccgctcgatc cccccgcgct cgttaacatc gaagcatcag tatgccgaat ctcactgacg      2280
     ggacacgcgc cgatcgttat cgcgtccgtt tatcttccgc cggaaaagat cgttctaagc      2340
     agtgatatcg aggcgctgct cagcatggga agctctgtca ttctggcggg cgacctaaat      2400
     tgtaaacaca tcaggtggaa ctctcacacc acaaccccta atggcaggcg gctcgacgcg      2460
     ttagtcgatg atctcgcctt cgatatcatc gctccgctaa ccccgactca ctacccgcta      2520
     aatatcgcgc atcgcccgga tatactcgac atagcgttat taaaaaacgt aactctgcgc      2580
     ttacactcga tcgaagtagt ttcagagtta gattcagacc accgtcccgt cgttatgaag      2640
     ctcggtcgct ctcccgattc cgttcccgtc acgaggactg tggtggattg gcacacgctg      2700
     ggcatcagcc tggctgaatc tgatccacca tcgctcccgt ttagcccgga ctctaccccg      2760
     tctcctcagg ataccgctga agccatagac atcctaacgt cacacattac ctcgacatta      2820
     gataggtcat cgaagcaagt tgtagcggag gacttccttc accgcttcaa attgcccgac      2880
     gatattgggg aactccttag agctaagaac gcttcgatcc gcgcctacga taggtatcct      2940
     accgtggaaa atcgtattcg aatgcgtgcc ctacaacgcg gcgtaaagtc tcgcatcgcc      3000
     gaagtccgag atgccagatg gtctgatttc ttagaaggac tcgcgccctc tcaaaggtct      3060
     tactaccgct tagctcgtac tctcaaatcg gatacggttg taactatgcc ccccctcgta      3120
     ggcccctcag gtcgactcgc ggcgtttgat gatgacgaaa aagcagagct gctggccgat      3180
     acattgcaaa cccagtgcac gcccagcatt caatccgcgg accctgttca tgtagaatta      3240
     gtagacagtg aggtagaacg cagagcctcc ttgccaccct cggatgcgtt accacccgtc      3300
     accccaatgg aagttaaaga tctgatcaaa gacctacgtc ctcgcaaggc tcccggttcc      3360
     gacggtatat ctaaccgcgt tattaaactt ctacccatcc agctcatcgt gatgttggca      3420
     tctattttca atgccgctat ggcgaactgt atctttcccg cggtgtggaa agaagcggac      3480
     gttatcggca tacacaaacc cggtaaacca aaaaataatc cgacgagtta ccgcccgatt      3540
     agcctcctca tgtctctggg caaactgtat gagcgtctgc tctacaaacg cctcagagac      3600
     ttcgtctcat caaagggcat tctcatcgat gaacaattcg gattccgtgc aaatcactca      3660
     tgcgtacaac aggtgcaccg cctcacggag cacattcttg taggacttaa ccgaccaaaa      3720
     ccgatctaca cgggagccct cttcttcgac gtcgcaaaag cgttcgacaa agtttggcac      3780
     aacggtttga tttttaaact tttcaacatg ggcgtaccgg acagtctcgt gctcatcata      3840
     cgagacttct tgtctaaccg ctcttttcga tatcgagtag agggaacccg ctcctccccg      3900
     cgaccactca cggctggagt cccgcaaggc tccgttctct ctccgctcct atttagttta      3960
     tttattaacg atattccccg gtcgccgccg acccagctag ccttattcgc tgacgacaca      4020
     accgtttact actcaagtag aaacaagtcc ctaatcgcga gtaagctcca gagtgcagcg      4080
     ttaaccctcg gacagtggtt ccgaaaatgg cgcatagaca tcaacccagc gaaaagcaca      4140
     gcagtgttat ttcaaagggg aaactcaccg cttatttcct cccgcattag gaggagaaat      4200
     atcacacccc cgatcaccct cttcggccta cctatacctt gggctaggaa ggtcaagtac      4260
     ctgggagtca ccctggatgc atccatgaca ttccgcccgc atataaaaac agtccgcgat      4320
     cgtgccgcat ttattctcgg cagactctat cccatgatct gtaagcggag taaaatgtcc      4380
     cttcggaaca aggtgacact ttacaaaact tgcataaggc ccgtcatgac ttacgcgagt      4440
     gtggtgttcg ctcacgcggc ccgcacacac atagacaccc tccaatccct acaatcccgc      4500
     ttttgcaggt tagccgtcgg ggctccgtgg ttcgtgagga acgtcgacct acacgacgac      4560
     ctgggcctcg aatcgatccg caaacacatg aagtcagtgt cggaacgtta cttcgataag      4620
     gctatgcgtc atgataatcg ccttatcgtt gccgccgctg actactcccc gaatcctgat      4680
     cacgcaggag caagtcaccg tcgtcgccct agacacgtcc ttacggatcc atcagatcca      4740
     ataactcttg cattagatac cttcagctct aacactagga gcaggcttag gagccccggt      4800
     aaccgtactc gtcgaactcg acaaagaggt cgacgtgcag cctaacccat gcatcagccc      4860
     gctgagtttc tcgccggatc ttctcagtgg gtcacgattc cgatccggta gtagattcat      4920
     tcgcgaagca actgctcttg agtcgttagg tttccttcgg aggcgctcgg gcagttgtta      4980
     gcaaatccca cccctcttgg ctgagccttt gctcgcccac ctgtcctggt gaagctggaa      5040
     aggcctccgg gccaccagta atatctcaat cataaaaaaa aaaaaaaaaa a               5091
//
ID   BMMAR3      repbase;    DNA;    INV; 1307 BP.
XX
AC   AF461149;
XX
DT   12-SEP-2002 (Rel. 7.08, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Bombyx mori DNA transposase gene BMMAR3, complete cds.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; BMMAR3;
KW   complete cds; transposase gene.
XX
NM   BMMAR3.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1307
RA   Robertson H.M. and Walden K.K.;
RT   "Bmmar6, a second mori subfamily mariner transposon from the
RT   silkworm moth Bombyx mori.";
RL   Insect Mol Biol 12(2), 167-171 (2003).
XX
DR   Genbank; AF461149; Positions       1    1307.
XX
SQ   Sequence 1307 BP; 411 A; 243 C; 297 G; 356 T; 0 other;
     actagtcagg tcataagtat tgtcacacag taaaaacttt tcttttagaa tgctggccac        60
     aaaaaagttt attgaattcg aatttcgaat tgttcatgaa aataaaaatg tatactttta       120
     gaattttact catttttaaa tatggagtgg acgcttaaag aagaccgtgt tgcagttatt       180
     gcgttgcatc gttgcggtta cgcgccaatt caaattttta acatactgaa aaatttgaat       240
     ataaccaaaa gattcgttta tcgtaccatc aaacgataca atgaagactc tagtgtagat       300
     gacaggtcaa gaagtggtcg ccctcggtct gttaggactc cagcagtgat aaaagctgtg       360
     aaggcgcgaa ttcaaagaaa tcccaaacgt aagcagaaac tgttggccct tcagatgggg       420
     ttaagcagaa ccacggtgaa aagggtgtta aatgaagact tagggcttcg ggcatatcga       480
     agaaaaacag gacatcgttt gaatgctcgt ctaatggacc tgagactgaa gagatgccgc       540
     gctttgttga agcggtacgc gggaaaaaaa tatcgggaaa ttcttttttc ggatgaaaaa       600
     atttttaccg tagaagagag ctacaacaaa caaaatgata aggtgtacgc acacagtagt       660
     gaagaagcga gcaaccgtat tccgcgtgtc caacgaggtc attttccatc ctcgctcatg       720
     gtatggttgg gagtttctta ttggggctta acagaggtac atttttgtga gaaaggtgta       780
     aaaacgaatg cagttgtgta tcaaaataca gtcctgacga accttgtgga acctgtttct       840
     cataccatgt tcaataacag gcactgggta ttccaacaag attcggcgcc agctcataga       900
     gcgaagagca cacaagactg gctggcggcg cgtgaaatcg acttcatccg gcacgaagac       960
     tggccctcct ccagtccaga tttgaatccg ttagattaca agatatggca acacttggag      1020
     gaaaaggcgt gctcaaagcc tcatcccaat ttggagtcac tcaagacatc cttgattaag      1080
     gcagccgccg atattgacat ggacctcgtt cgtgctgcga tagacgactg gccgcgcaga      1140
     ttgaaggcct gtattcaaaa tcacggaggt cattttgaat aaactttagt gtcataagaa      1200
     tctatgtttt gttaagttca ttttggtata tgaatggtta cataatgaat aaacttgttt      1260
     caattatttt acattaaaca tgtgacagaa tttatgacct gactagg                    1307
//
ID   BMRP1       repbase;    DNA;    INV; 144 BP.
XX
AC   X13869;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   B. mori silk fibroin repetitive sequence.
XX
KW   BMRP1; Repetitive element.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-144
RA   Mita K., Ichimura S., Zama M. and James C.T.;
RT   "Specific codon usage pattern and its implications on the
RT   secondary structure of silk fibroin mRNA.";
RL   J. Mol. Biol 203, 917-925 (1988).
XX
DR   GenBank; X13869; Positions      37     180.
XX
SQ   Sequence 144 BP; 10 A; 26 C; 64 G; 44 T; 0 other;
     ggtgccggtg ccggttcagg tgctggtgct ggttcaggag ctggtgctgg ttcaggtgct        60
     ggtgctggtt caggtgctgg tgctggttca ggtgctggtg ctggttcagg agctggtgct       120
     ggttcaggtg ctggtgctgg ttca                                              144
//
ID   BmSE        repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   10-AUG-2012 (Rel. 17.08, Created)
DT   10-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; BmSE.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-271
RA   Xu J., Liu T., Li D., Zhang Z., Xia Q. and Zhou Z.;
RT   "BmSE, a SINE family with 3' ends of (ATTT) repeats in
RT   domesticated silkworm (Bombyx mori).";
RL   J Genet Genomics 37(2), 125-135 (2010).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 271 BP; 78 A; 38 C; 57 G; 98 T; 0 other;
     aacggccgtc tggtgtagtg gtaagtgaca tggtcactac acaagggggt cgcgggttcg        60
     aatcccgcca agggaagata tttgtatgat aaatataaat gtcttttcca gggttatgga       120
     tgtatattaa atatatgtat gtgtataata aaaatcttac atttatttcc gttatctggt       180
     acctgtaaca caagttcttt acgaacttat cacgggacca gttaacgtgg cgtgattgtt       240
     agtaaatatt tatttattta tttatttatt t                                      271
//
ID   BOTMAR1     repbase;    DNA;    INV; 1259 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version 3)
XX
DE   Bombus terrestris repetitive sequence mariner-like element
DE   Botmar1.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Repetitive sequence; mariner-like element; transposase domain;
KW   BOTMAR1.
XX
NM   BOTMAR1.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RA   Bigot Y., Hamelin H.M., Capy P. and Periquet G.;
RT   "Mariner-like elements in hymenopteran species: insertion site
RT   and distribution.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(8), 3408-3412 (1994).
XX
RN   [2]
RA   Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (31-MAY-2004).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(161..529,537..1193)
FT                 /product="BOTMAR1_1p"
FT                 /translation="MSNFVPGNYDLRTALIFCYHLKKTAAESHRMLVEAYG
FT                 EHALGKSQCFEWFKKFRSGNFDARNEERGRPPKKFRDSELQASLDEDDAQT
FT                 QQQLADQLNVTREAVSIRLKAMGRSRRWENGFHMNKTAGKPKNHLRNAARQ
FT                 IQKKSFLHRIVTGDEKWIYFENPKRKRSWVAPGEPPTSTTRPNRYGRKTML
FT                 CVWWDQKGVIYYELLKPGETVNTERYRQQMIDLNQALREKRPEYQKRQHKV
FT                 ILLHDNAPSHTAKPVKETIEAFSWEILSHAAYSPDLAPSDYYLFASMGHAL
FT                 SDQHFTSYENVRKCLDDWFASKERQFFWRGIHQLPDRWEKCIASDGQYFE"
XX
SQ   Sequence 1259 BP; 412 A; 255 C; 274 G; 317 T; 1 other;
     tatgaaaccg gaattggcct atagatggtc ctagctgata atgtagttat cactaaactg        60
     cgtcrttgat gccaaaagtc tttgttgaca tctcacaaac attttcgact cagaacaata       120
     caagtttcat acaacagcat agtttgtaat agcgttgaac atgtcgaatt ttgtgcctgg       180
     aaactacgat ttgcggacag cattgatttt ctgttaccat ttgaagaaaa ctgctgcaga       240
     atcgcatcga atgcttgtcg aagcttacgg tgagcatgct cttggtaaat cacagtgctt       300
     tgagtggttt aaaaaattca gaagtggcaa ttttgacgcg aggaacgaag aacgtggaag       360
     accaccgaaa aagtttcgag acagcgaatt gcaagcatcg ttggatgagg atgacgctca       420
     aacgcaacaa caactcgctg atcaattaaa cgtgacacga gaagccgtct ccatacgttt       480
     gaaagccatg ggaagatcca gaaggtggga aaatgggttc cacatgaact gaatgaaaga       540
     cagcaggaaa accgaaaaac cacttgcgaa atgctgctcg ccagatacaa aaaaagtcat       600
     ttctccaccg aattgtgact ggcgatgaaa agtggatata ttttgagaat cctaagcgta       660
     aaagatcatg ggtagctcca ggcgaaccac cgacatcgac tacaagacca aatcgctatg       720
     gacggaagac aatgctctgt gtttggtggg atcagaaggg tgtgatctat tatgagctgt       780
     taaaacctgg cgaaaccgtt aatactgagc gctaccgaca acaaatgatc gatttgaatc       840
     aagctttgcg tgaaaaacga ccagaatatc aaaaaaggca acacaaagta attttgcttc       900
     atgataatgc accatcacat acagcaaaac cggtcaagga aacgatcgaa gcgttcagtt       960
     gggaaatact ttcgcacgcg gcttactcac cagacttggc tccgtccgat tactatttat      1020
     ttgcatcgat gggacacgca ctttctgacc agcacttcac ttcttacgaa aatgtacgaa      1080
     aatgcctcga tgactggttt gcctcaaaag agcgacagtt tttttggcgt ggcatccacc      1140
     aattgccaga caggtgggaa aaatgtatag ctagcgatgg gcaatacttc gaataaaata      1200
     tttttaatca ttttcataca ataaacgtgt attttctata caaaaattcc ggtttcata       1259
//
ID   BovB_BM     repbase;    DNA;    INV; 2863 BP.
XX
AC   .
XX
DT   26-NOV-2012 (Rel. 18.01, Created)
DT   26-NOV-2012 (Rel. 18.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Bombyx_mori;
KW   BovB_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Walsh A.M., Kortschak R.D., Gardner M.G., Bertozzi T.
RA   and Adelson D.L.;
RT   "Widespread horizontal transfer of retrotransposons.";
RL   Proc Natl Acad Sci U S A- (2012).
XX
RN   [2]
RP   1-2863
RA   Walsh A.M., Kortschak R.D., Gardner M.G., Bertozzi T.
RA   and Adelson D.L.;
RT   "Widespread horizontal transfer of retrotransposons.";
RL   Direct Submission to Repbase Update (28-SEP-2012).
XX
SQ   Sequence 2863 BP; 923 A; 652 C; 621 G; 667 T; 0 other;
     ccaagaaaac ctcatgatgt cgacagatat attatttgat gttctctcat gcgacccgac        60
     tgaccaccgg cgccacccgc tacccggggc gagtggtgtg aaattggcta ccgaagcttc       120
     ccatgaagtg actcgtcagg cttcagaagg aaggattgtt actggcgact cgaagaccat       180
     cttaatacgc aaacaacagc gtattagcac gtggaatgtg aatgggcttc ttcaagcggg       240
     aaaactatcc atcgtcgaaa aagaaatgga aaatcacaac ttgtcaattc tgggcatctg       300
     cgagacacat atgagaaaca atggccattt taaaacatct actggaaata ctgtgtactt       360
     ctcaggtaat gaaaattcaa gcagaaatgg agttgcaatt gtgctgccac cctacctgaa       420
     ccaatacgtc ctcggatacc atcccatatc tgatagaata ctaactttga aactcaacac       480
     aaaaccattc ataacaaatg tcatacaaat atatgcccca acagcccagg ccaagtacga       540
     ggatatcgac gacttctatc attcactaga cgcgacactc ggatcaatac ctaatcgaga       600
     gataaccttt attcctgggg actggaatgc aaaagtcggt gaaacgacag cggatggaca       660
     cataagacgc actgtaggaa attttggctt gggcaaacga aatgaccgtg gagaacgatt       720
     tttagaattt tgcgtggaaa aagatctcac gattctcaat acctgctttc aacatcatgc       780
     gaggcgactg tatacatgga aatcaccagg tgacagattc aggaaccaga ttaactacat       840
     attgatcaac tctcgctgga ggtccaccgt atcaaatgtc aagacctatc ctggggcgga       900
     ctgtggttca gaccatgtgc tcctggttgc aaacttccgc ctgcgcctca aagcgcaaaa       960
     acgtaaatgc aatttataga cccggacaag caagatagct tccgcaatgc tctcgaaaaa      1020
     cagcttttag gtacaacacc accagccagt gagtccgccg aagggctgtg gcagcggctg      1080
     aaatcatcta ttgcatcggc cgtctcagaa acagtgccta aacaagcaaa acaaaaaaga      1140
     tctatgtgga tttcaaacga tacatgggaa ttgattgaac gcagaaagaa cttgcaagga      1200
     tcagataaaa ttgaaaacta caatgcactc agtaaagaca taaaacaacg ctgccgacgt      1260
     gacaagaata ttttcattga aaatatttat aaaggaattg agtcgcactc cctaaagtta      1320
     caatcctctg atttatttaa gaaagttcgt ctgctgtcga aaaaatacaa agcaaagacc      1380
     tgggttatcg gcgacgagga tggcgactcc atcactgacc ttcagctgat cacagaaaga      1440
     tggcgtcgtt attgtgaaag cctttacaaa aaccccacta atgacaccac ttgtggtccg      1500
     gattttgttt gggctgatat agttcaagaa ccatccatat tgcattcgga aattaaggcg      1560
     accttgaaaa aactaaagga taataaagcg ccaggacatg ataacatcac agcagagact      1620
     ttaaagcact cagcgacgca ggaatagatg tactgcataa aatctgcaat catatctggc      1680
     agaatggtga atggccggat gattggagga gctccataat actgccacac aaaaaagcac      1740
     tacacaaaaa aggatccacg aaagactgta acaactatcg gacccttgct cttatctcac      1800
     atgcaagtaa aatccttctg catattatca attctagaat ccgacacttt ctggattggc      1860
     aaatccctca ggaacaggct ggttttgtca aaggcagagg tactcgcgag cagatcctaa      1920
     acatccgaca attaatagaa agatgccacg aattcgatac acctattatc ctgtgcttcg      1980
     ttgactacag caaggcgttt gactgcgttg gctggaactg cttatggcgg gtccttcagg      2040
     aactcggagt acccatgcac cttaaagctt ttctccaatc cctttactat ggcagtcagg      2100
     gcactgtaag ggtcgactac actatgtcaa accgttttaa tttcagaaga ggagttcgcc      2160
     aggggtgtat tctgtcaccc attctattta acatatacgg cgaatacatc atgcgcaaga      2220
     ccctagaaaa ctgggatgga ggcataacta taggtgacga agtgacgaac ctgcgctacg      2280
     cagatgacac cactctgctt gccacaatag aagcagagat gacagagctt ctgaacagga      2340
     tggagcacat agggttggag atgggactcg ccctcaacag atccaaaact aaaatcatgg      2400
     tcgttgatcg cacaaaaaag ttggagctta gtggaacact aaaccttgag cttgttgaca      2460
     actttattta cctaggctcc aacattaaca atacctgatc cagcgaacct gaagtacagc      2520
     tcggtaaaat ctggaaggac cataacatta cccagaaaac aaagacaaaa ctggtgctca      2580
     ctttggtctt ttccattttt ctatacggag cggagacctg gacccttaaa gcagctgatc      2640
     gcaaacgcgt ggatgctttt gagatgtggt gctggagaag aatgctccgg ataccttgga      2700
     cagtgaagag aagcaatcag tctatcttag atcaactgca gatcaagact agactgtcca      2760
     cactctgcct tcgtcgcgca ctcgagtact ttggtcatat tgctcggaaa acaccggata      2820
     gcctagaaat actattcgtg acagggaaga tcgagggaaa gag                        2863
//
ID   BR1_CP      repbase;    DNA;    INV; 286 BP.
XX
AC   X06431;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Chironomus pallidivittatus BR1 gamma ( Balbiani ring) gene pCp20
DE   repeat constant region.
XX
KW   Satellite; Simple Repeat; BR1_CP; CPBR1; Repetitive sequence.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-286
RA   Wieslander L.;
RT   "BR1_CP.";
RL   Direct Submission to Genbank (21-DEC-1987)Wieslander L., Dep. of
RL   Molecular Genetics, Karolinska Institutet, 10401 Stockholm,
RL   Sweden..
XX
RN   [2]
RP   1-286
RA   Lendahl U., Saiga H., Hoeoeg C., Edstroem E.J. and Wieslander L.;
RT   "Rabid and Concerted Evolution of Repeat Units in a Balbiani Ring
RT   Gene.";
RL   Genetics 117, 43-49 (1987).
XX
DR   GenBank; X06431; Positions       1     286.
XX
SQ   Sequence 286 BP; 123 A; 68 C; 61 G; 34 T; 0 other;
     accaagcaaa tcaggaccta gaccaagcca atcaggacct agaccaagca aatcaggacc        60
     taaaccaagc acatcaggac caagaccaag caaatcagga ccaagaccaa gcaaatcagg       120
     accaagacca agcaaatcag gacctagacc agagaaatgt ggtagtgcaa tgagaaaggc       180
     tgaagctgaa aaatgtgcca gaagaaaggg tagattcaat gcaaataaat gcagatgtac       240
     ctcagctggt aaaccaagca aatcaggacc tagaccaagc aaatca                      286
//
ID   BR1_CT      repbase;    DNA;    INV; 242 BP.
XX
AC   J01053;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Chironomus balbiani repetitive sequence.
XX
KW   Satellite; Simple Repeat; BR1_CT; Repetitive sequence.
XX
OS   Chironomus thummi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-242
RA   Baeumlein H., Wobus U., Gerbi A.S. and Kafatos C.F.;
RT   "the basic repeat unit of a chironomus balbiani ring gene.";
RL   Nucleic Acids Res 10(13), 3893-3904 (1982).
XX
DR   GenBank; J01053; Positions       1     242.
XX
SQ   Sequence 242 BP; 100 A; 62 C; 51 G; 29 T; 0 other;
     ccaagatcaa gaccaagcaa gggatctaag cctagcaagg gatccaaacc agaaggacca        60
     tctaaaccaa aatccagacc cgaaaaacca tctaaaccaa gcaagggaac taagccacgt       120
     ccatctaagc ctagcaaggg aactaaacca cgtccatcta agcctagcaa gggatcaaaa       180
     ccaaaaccag aaagatgcgg tagtgcaatg agaagagttg aaagcgagaa atgcgctgca       240
     ac                                                                      242
//
ID   BR2_CT      repbase;    DNA;    INV; 240 BP.
XX
AC   K02310;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C. tentans beta-repeat in Balbiani ring 2.
XX
KW   Satellite; Simple Repeat; BR2_CT; CTBR2; Repetitive sequence.
XX
OS   Chironomus tentans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-240
RA   Hoeoeg C. and Wieslander L.;
RT   "Different evolutionary behavior of structurally related,
RT   repetitive sequences occurring in the same Balbiani ring gene in
RT   Chironomus tentans.";
RL   Proc. Natl. Acad. Sci. U.S.A 81(16), 5165-5169 (1984).
XX
DR   GenBank; K02310; Positions       1     240.
XX
SQ   Sequence 240 BP; 100 A; 40 C; 59 G; 41 T; 0 other;
     aaatgcggca gtaaaatgag aagagtttta gccgaaaagt gtgctgctag aaagggtaga        60
     ttcagtgcaa gtaaatgcag atgtttctca agaccaagtt ggtcaggaat taaaccagaa       120
     aaacgtagca aatcaggatc aagaccagag aaacgtagca aatcaggatc tagaccagag       180
     aaacgtagca aatcaggatc aagaccagag aaacgtagca aatcaggatc tagaccagaa       240
//
ID   BR6_CP      repbase;    DNA;    INV; 201 BP.
XX
AC   K01695;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.pallidivittatus balbiani ring (BR6), secretory protein sp-Ic
DE   repetitive region.
XX
KW   BR6_CP; CPBR6; Repetitive sequence; tandem repeat.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-201
RA   Galler R., Rydlander L., Riedel N., Kluding H. and Edstroem E.J.;
RT   "Balbiani ring induction in phosphate metabolism.";
RL   Proc. Natl. Acad. Sci. U.S.A 81(5), 1448-1452 (1984).
XX
DR   GenBank; K01695; Positions       1     201.
XX
SQ   Sequence 201 BP; 81 A; 38 C; 57 G; 25 T; 0 other;
     aaagagccta aatgcgatga tgaaatgaga gaaagggtca agagacgttg tgacaatgag        60
     aatcgccgat ttgacgcaag aagatgtgaa tgcggtgaga agaaacgtcc agaagataac       120
     gatgacgaag atcgcccaga acgtccagaa agacccgaaa gacctgaaag acctgaagaa       180
     ccagaacgcg agcccgaaag a                                                 201
//
ID   BRP1_NV     repbase;    DNA;    INV; 214 BP.
XX
AC   X64093;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   N.vitripennis repetitive DNA from B chromosome.
XX
KW   SAT; Satellite; Simple Repeat; BRP1_NV; Repetitive DNA;
KW   satellite DNA.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-214
RA   Eickbaum C.D.;
RT   "BRP1_NV.";
RL   Direct Submission to Genbank (27-DEC-1991)D.C. Eickbaum,
RL   University of Rochester, Dept. of Biology, Hutchison Hall 334,
RL   Rochester, NY 14627, USA.
XX
RN   [2]
RP   1-214
RA   Eickbush G.D., Eickbush H.T. and Werren H.J.;
RT   "Molecular characterization of repetitive DNA sequences from a B
RT   chromosome.";
RL   Chromosoma 101, 575-583 (1992).
XX
DR   GenBank; X64093; Positions       1     214.
XX
SQ   Sequence 214 BP; 80 A; 40 C; 41 G; 53 T; 0 other;
     ggcagaagaa gagggtcaaa agtctagact ttggcttact ggcttcaatc acgccagttg        60
     taactacaat ttaatacact agactccaag atatatacaa gtagcttata taaaaataat       120
     acacgtaaga tcctcgcaga gggaagatga cgctcctaaa actcaaaatt attagggtcc       180
     acgaaaaaaa gtcggccata gtaaggcatt tttt                                   214
//
ID   BRP2_NV     repbase;    DNA;    INV; 110 BP.
XX
AC   X64090;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   N.vitripennis repetitive DNA from B chromosome.
XX
KW   SAT; Satellite; Simple Repeat; BRP2_NV; Repetitive DNA;
KW   satellite DNA.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-110
RA   Eickbaum C.D.;
RT   "BRP2_NV.";
RL   Direct Submission to Genbank (27-DEC-1991)D.C. Eickbaum,
RL   University of Rochester, Dept. of Biology, Hutchison Hall 334,
RL   Rochester, NY 14627, USA.
XX
RN   [2]
RP   1-110
RA   Eickbush G.D., Eickbush H.T. and Werren H.J.;
RT   "Molecular characterization of repetitive DNA sequences from a B
RT   chromosome.";
RL   Chromosoma 101, 575-583 (1992).
XX
DR   GenBank; X64090; Positions       1     110.
XX
SQ   Sequence 110 BP; 23 A; 19 C; 29 G; 39 T; 0 other;
     ctgggtttaa gcacttggtt tttagagttt aacctcgctt tgctcgcctt acgccgatgt        60
     gtcgaagagt tttaataaat aatttactga tctcgggggg catggtgtag                  110
//
ID   BS          repbase;    DNA;    INV; 5126 BP.
XX
AC   X77571;
XX
DT   11-JAN-1999 (Rel. 4.00, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   BS retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; retrotransposon; LINE; BS.
XX
NM   BS.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5126
RA   Udomkit A., Forbes S., Dalgleish G. and Finnegan J.D.;
RT   "BS a novel LINE-like element in Drosophila melanogaster.";
RL   Nucleic Acids Res 23(8), 1354-1358 (1995).
XX
DR   GenBank; X77571; Positions    5776     651.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..2250
FT                 /product="BS_1p"
FT                 /translation="MDENNSDDTQLLNKQSNHRTMFSIAGKLPHEIRNECR
FT                 SAIQRFTSSVTQSSSVTTTTVTFTSANNSTIYTMANAAISSPCLGTRSTHQ
FT                 ESSTLINSGIVEDNLSDAARRLLNDQNQRAGKRKNGKPLSPISNPKRGSSS
FT                 QVLHSPPTTSLKISTNNRFAILDTDISTNEESVEGMMIEGADIDSAHMDDS
FT                 QLDGSNTGRNLQETHNTANQLNDHKKPPQIVVNIRNLNDLFELIKEKTSLD
FT                 NVVVKANQGETVRIFPKDSDTYRKIVSHMDDIGIQFHTYQMLTDKPHRIVV
FT                 RDLHHSTSNKDITADLKCLGYEVLHIHNPSSRTNKDEKLNIFFINIKPCAK
FT                 INEIYHVKTLCRQKIRIERMRKSSEIAQCRRCQEYGHTAKYCRRHPNCARC
FT                 GENHQTMQCTRPIDALPTCYHCSENHTASFKGCLKYQELLRRSMGPARNGN
FT                 RLNKNTHHHSPRDRQELPALQPNYRKNNTQSTVQQLSTQPQLNFAQSQPSI
FT                 GTGGNRAVSYATIVKGYPKIAPSKDGPAQRLRLNNPQTKQICSNTRSNTQQ
FT                 NNSSDVQVFLQQQQQQFLEWQQQIQQQQHQQFLMWLQQQQQEQLQYKSQTN
FT                 QRLEKLEKMVLELANMLKEWAGSELNPQLFNNVSASL"
FT   CDS           2395..4968
FT                 /product="BS_2p"
FT                 /translation="MDMRTISHIGHPLIIIVLAGVAVFVRTTLRHFPQRVI
FT                 ETRHIQLSSVKVATGLGDLQFSAIYCSPSTRIEERHFTDIIRACGQRYLVG
FT                 GDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPS
FT                 CIDFAVYHGIPDHLATITQSWDLDSDHLPLIISIETDSTHVNPSPRLVTKH
FT                 TDLLAFSRQLESLISLNTTLNSGEEIEMAVDNLTESIHRAAAVSTSPVPRI
FT                 GTTYGIVLTREARELLTQKRRLRRRAIRSQDPWDRLLWNRAAKQLRNVLRE
FT                 LRSNFFEQKLASMDYTVDAGYSLWKCTKSLKRQPFRQVPIRCPGGELAKNE
FT                 EEQANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLPIKPIRVEEI
FT                 VEAIKSLPLKKSPGIDNVCNATLKALPVRTILYLALIYNAILRVQFFPKQW
FT                 KMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRI
FT                 LPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWH
FT                 DGLISKVKKLFPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSV
FT                 LGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARG
FT                 LQEYLTTLAAWCKRWNLKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQP
FT                 SQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRA
FT                 VYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTL
FT                 HRDLNLHTVEEQISKHTSRYSDRLRRHHSILARRLLPARPLRRLKRKGFAK
FT                 TLGQP"
XX
SQ   Sequence 5126 BP; 1631 A; 1222 C; 1075 G; 1198 T; 0 other;
     ctgaagtcgc aaatctgcat tcatagagat cggttgtgtc gcgcgtatgc aaaagtgatt        60
     attttgcttt attattgcaa tttcttgggt gcttaaaata gcactcacca gtacattcgg       120
     gcgctgcttc gtgcggtgtc ggcatttggc aacaacaaaa agcgttaatc gaagtgcggt       180
     gtagctacga tacctgccct tcgggcttat tcccctcacc ccgcgcaaag ccgctgaagg       240
     gggcaataaa atctatgctt atcagcaaaa ctgatccgta tttgatctgt tttgtggtca       300
     gttaagcaag ctattttgta aatattaaga attattatta agacaatgga tgagaacaat       360
     tctgatgaca cccagctttt aaataagcag agtaaccata gaacaatgtt ctcaatagct       420
     ggcaaattac ctcacgagat tagaaacgag tgccgatcag caattcaacg ctttacaagc       480
     agcgtaactc aaagcagtag cgtcaccaca acaacggtga catttactag tgccaataac       540
     agcaccatat atacaatggc aaatgccgca ataagcagcc cgtgccttgg aacaagatcc       600
     actcaccagg aaagttccac attgataaac tccggaatcg tagaagataa tctcagcgat       660
     gctgccagaa ggttattaaa tgaccaaaat cagagagcgg gtaaaaggaa aaatggaaag       720
     cccttgtccc ccatctccaa cccgaaaaga gggagtagca gccaagtttt acactcgccc       780
     cctacgacta gcctgaagat aagcactaat aataggtttg ccattctgga cacggatatt       840
     tctactaacg aagaaagcgt ggaaggcatg atgatagagg gtgctgatat tgacagtgcc       900
     catatggatg attctcaact cgatggttcc aatactggtc gaaacttgca ggaaacacac       960
     aatacagcca atcaacttaa tgatcacaaa aaaccaccac aaattgttgt aaatatcaga      1020
     aacttgaatg atctgtttga gcttataaaa gaaaagacaa gcttagataa cgttgtcgtt      1080
     aaagctaatc aaggggaaac ggttagaata tttccaaaag acagcgacac ttacaggaaa      1140
     atagtgagcc atatggatga cattggtatt cagtttcaca cttaccaaat gctgacagat      1200
     aagccacaca gaattgtagt aagggactta catcacagta catcaaacaa agacataacc      1260
     gccgatctga aatgtttagg ctacgaagtg ctccacattc acaaccctag ttctaggact      1320
     aataaggacg aaaaactaaa catctttttc attaatataa agccctgtgc aaaaattaat      1380
     gaaatttacc atgtcaagac cctttgccga cagaaaatac ggattgaaag gatgagaaag      1440
     tcttctgaaa ttgcgcaatg tcgtcgttgt caggagtacg gccatacagc taaatactgc      1500
     cgcagacacc caaattgtgc cagatgtggc gaaaatcacc aaaccatgca atgcacccga      1560
     ccgatagacg cactgcccac atgttaccat tgctctgaaa atcatacggc tagcttcaaa      1620
     ggttgcctaa agtatcagga gcttcttcgc agatctatgg ggcctgcaag aaatggaaac      1680
     aggttaaata agaacaccca tcatcactct cctagagacc ggcaagagct tcctgccttg      1740
     cagcccaatt accgcaagaa caacacccaa tcaacagtac agcagttatc gacacaacca      1800
     cagcttaatt ttgcccaaag ccaaccatct ataggcactg gtggaaacag agcagtatca      1860
     tatgctacaa tagtaaaagg atacccaaaa atagcgccct ccaaggacgg accagcccag      1920
     cgtctacgct taaacaaccc acaaacgaaa caaatctgca gcaacaccag atcgaataca      1980
     cagcagaata actcatctga tgtgcaagta ttcttacaac agcaacaaca acagtttctg      2040
     gaatggcaac agcagatcca acaacaacaa caccaacagt ttcttatgtg gttgcaacag      2100
     cagcagcaag aacaactaca gtataaaagc caaaccaatc aacgactgga aaagcttgaa      2160
     aaaatggttc ttgaactagc gaatatgtta aaagaatggg ctgggagtga acttaacccc      2220
     cagcttttta acaacgtctc agcctcccta tgaatccact aaagattctt atttggaatg      2280
     ctaacggcat ttcaagaaaa gccaaagatg ttgagctgtt cgcgcacaac aaaaaggtag      2340
     acatccttct tgtgactgaa ctaagactca aaagagggga aactgtaaag atatatggat      2400
     atgcgtacta tcagccatat aggccatccc ttaataataa tagtgttggc cggagtagcg      2460
     gtgttcgtga ggacaactct tcgccacttt ccacaaaggg tcattgagac acgccacata      2520
     caattgtcat cagtaaaagt agccacagga ctgggggacc tgcagtttag cgctatttac      2580
     tgctccccaa gtactagaat cgaggaaaga cattttactg acataatacg cgcctgcggc      2640
     caaaggtact tggtaggtgg cgactggaat gcccgccact ggctttgggg cgacacttgc      2700
     aattcacctc gcgggcggga actagcagaa gccttgtccg tgactggagc taagatcctc      2760
     gcaactggct ctccgacaag gtatccgtat gtgcccagcc atacgccctc atgcatagat      2820
     ttcgcagtgt atcatggtat accagaccac ctagcaacta taacacaaag ctgggacttg      2880
     gattctgatc acttgcctct tatcattagc attgagacag acagtactca tgtcaatcca      2940
     agtcccaggc tagtcaccaa acacactgac ctccttgcct ttagccgaca attggagagc      3000
     cttatttcgc tgaacaccac gcttaattct ggtgaggaaa ttgaaatggc tgttgacaac      3060
     ctaactgaaa gcattcatag ggccgcggct gtctctactt ctcccgtccc tcggataggc      3120
     accacatatg ggatagtctt gacaagagag gctagagagc ttctgacaca gaaaagaaga      3180
     ctccgaaggc gagcaatccg atctcaagac ccctgggacc gacttttatg gaaccgtgct      3240
     gcaaagcaac tacgaaacgt cctcagagaa cttcgaagca acttttttga gcagaaacta      3300
     gctagtatgg actacacagt ggatgctgga tactcgctat ggaaatgcac caagtccctt      3360
     aaaagacagc cgtttagaca ggttcctata aggtgtccgg gaggcgaact tgctaaaaat      3420
     gaagaggagc aggctaattg ttttgcaaat catctggaga caaggttcac ccacttccaa      3480
     ttcgctacaa cggagcagta tcaagagacg cttgatagcc tagagacacc tctgcaaatg      3540
     tcactaccca ttaagcccat cagggttgag gaaattgtcg aagctatcaa atctctcccg      3600
     ttaaagaagt ctcctggcat cgacaacgtt tgcaatgcca cactaaaagc actacctgtt      3660
     cgaacaattc tctacttggc gctgatatac aatgccatac tcagggtgca gtttttccca      3720
     aagcagtgga aaatggcagc aatcctaatg atacataagc ctggtaaacc tgaagagagc      3780
     cctgaatcgt accgacccat aagtctttta tcttcgctat ccaagctatg ggaacgactg      3840
     attgccaaca gattaaatga catcatgacc gagcgtcgta tcctgccgga tcatcagttt      3900
     ggctttcgtc agggacacag tactgtggag caggtacaca gactgacaaa acatatcctt      3960
     caggcctttg atgataagga atactgcaat gctgtgttca ttgacatgca acaggcattc      4020
     gatagggtct ggcatgacgg ccttatcagc aaagttaaaa agttattccc agcaccatac      4080
     tatggagtcc taaaatcata cttggaagat cggagattca tggtcagggt cagaaactcc      4140
     tactcgattc cccgcgttat gagagctgga gttccgcagg gcagcgtact gggaccgttg      4200
     ctctactcag tatttactgc agatctgccc tgcccaaacg cctatcatat ggcagatccc      4260
     aggaaggccc ttcttgctac gtacgctgac gatattgccc tgctgtacag ctctaattgt      4320
     tgcaacgagg cagcaagggg tctccaagag tacctcacca ctctggctgc atggtgcaaa      4380
     agatggaatt taaaggtcaa tccgcaaaag accatcaatc cctgcttcac cttgaagacc      4440
     ttaagtcccg tcaccgcacc catagagctg gaaggtgtaa tcctagatca accttcacag      4500
     gctaagtacc tcgggattac ccttgataaa cggttgactt tcggcccgca cctgaaagct      4560
     acgactcgga gatgttatca aaggatgcaa caacttcgat ggctgttaaa cagaaaaagc      4620
     accatgacac tgagagccaa aagagcagtc tacgtccact gcgtagcccc gatctggctg      4680
     tacggaatac agatctgggg tatcgcagca aaatccaact acaaccgcat tcaggtattg      4740
     caaaatcgtg ccatgcgtgc aattacagac tgcccatact atgtacgtgg cactaccctt      4800
     caccgtgatc tgaatcttca tacagtggaa gagcagatct ccaagcacac cagcagatat      4860
     agtgatagac taagacgaca ccacagtata cttgctagac gcttactccc tgctaggcct      4920
     ctaaggagat taaaaaggaa gggtttcgcc aaaacacttg gacaacccta aagaccccct      4980
     cgaaatatga gacatagttg taagtcctca catgattagt gagaggtttg gttttatctt      5040
     ttatatgtta attgcgctgt tatgttactg ttattgcatt gtattgattc atcgcttcta      5100
     aataaataaa tataaaaaaa aaaaaa                                           5126
//
ID   BS2         repbase;    DNA;    INV; 4731 BP.
XX
AC   .
XX
DT   26-JUL-2000 (Rel. 5.06, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   BS2 is a non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; LINE;
KW   X-element; BS2.
XX
NM   BS2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4731
RA   O'Hare K., Tudor M., Davis J.A., Feldman M. and Grammatikaki M.;
RT   "A novel LINE from Drosophila melanogaster, the X element.";
RL   Unpublished.
XX
RN   [2]
RP   1-4731
RA   O'Hare K., Tudor M., Davis J.A., Feldman M. and Grammatikaki M.;
RT   "BS2.";
RL   Direct Submission to Genbank (22-FEB-2000)Biochemistry
RL   Department, Imperial College of Science, Technology & Medicine,
RL   London SW7 2AZ, UK.
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..1813
FT                 /product="BS2_1p"
FT                 /translation="MNTSNETAAADESLDTAFLSSPQCAAPQRFQKIKRKS
FT                 RASPETERKKPKSTIGKQGENPSATEPRYGGNSNRFGLLAHLTADKQVGNE
FT                 IGDLYDQPSTSHQAAIAAAKRDAASAGTTSSAKKAQSKPPPIVMEGVDDVY
FT                 LMMQSIENIVDLEKIEARASMSGVLRLYAADANTFRTIVNWLEIEEYEFHC
FT                 YQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLRRNEPGTS
FT                 KASPVNMFFLNIAAAANNKEILAVKALCHMRVVIEPLRKRNAIVQCHRCQQ
FT                 FGHTAKYCRKAHICVKCAGEHPAKDCTRPRIELCTCYNCGGQHPANYKGCS
FT                 KLQAFLQRSRPRSGVAGRTEVSERPTPRGLAGGKEIPSSRGGISYADVARG
FT                 SIHHKQPMSLTHQQQKQQQQPYDGSPSRQRSRSRTRASRGTLQRSTDASSS
FT                 IEAILQTLNENINSLRSIQEKQMELMMMMMKQQQQQSHQQGQIINLLTALQ
FT                 ARQAP"
FT   CDS           1816..4539
FT                 /product="BS2_2p"
FT                 /translation="MMPLRILVWNADGVSTKLPEVECFVRRHEIDVLLLSE
FT                 THCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIATAK
FT                 VQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWN
FT                 ASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDF
FT                 ALTKGVLGIHANISAVVELSSDHLPLVITLDAGAISYPKMERLITRRTNLE
FT                 VFQSQLESTLPLNTAINSGQDVDDAIELLTNNIKSAARLATRSISRQPAAD
FT                 RIPIPREILLLIAEKRRLRTRWMRSRHPSDKTEWNRALSRLRCALVLHKAA
FT                 WFDERLANTGVESEATHSLWKATRAIKRRCTRKAPLVDSNGTWCRTDLGQA
FT                 EVFAAHLAERFQPFKLASLQQVEETQDQLNQALQMDMPITPFEPCEVAEVI
FT                 VRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGI
FT                 ISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVRIMEAQGITPEH
FT                 QFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQ
FT                 LKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPL
FT                 LYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYR
FT                 FSEWARRWNIGINSSKSNNVCFTLKRRTPPPVYIEEVPVPQPNAAKYLGVL
FT                 LDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPN
FT                 WKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATV
FT                 FDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLTR
FT                 VRRS"
XX
SQ   Sequence 4731 BP; 1331 A; 1215 C; 1184 G; 1001 T; 0 other;
     aaggttcgtg tctaacaata cgcacctgac aaagtggatt aagtgaaatt agttttcgcg        60
     gtaataaact tatggacaag accagaatac tggcacacat agcaaatagt gaccccccaa       120
     gtcactaaca gtgaaataat agtgaaacga aaacattttc attcaaaaat acaaagttaa       180
     gtttctcgaa ctggggctcc gctgcccagc tgccacgcga tcgcacaaac agctgtttgc       240
     gagcttaaag ctttctatcc cagggttcaa gttttggcta gaaccctggt gatttggtgc       300
     acacttcaat atgaacactt caaatgaaac cgctgcggct gatgaatcgt tggatactgc       360
     gtttctctcg agcccccaat gtgctgcccc gcagcgcttt caaaaaataa agcgaaagtc       420
     tcgtgcttct ccggagactg aaaggaaaaa acccaaatca accatcggca aacaagggga       480
     aaacccttcg gctacagaac ctagatatgg cggcaattca aaccgatttg gtttacttgc       540
     gcatctcaca gctgacaaac aagtaggcaa tgaaattggc gatctgtatg accagcccag       600
     taccagtcat caagctgcaa ttgctgccgc taagcgggat gcagcctccg ctggtaccac       660
     tagctcagcc aaaaaggcgc agtccaaacc acctcctata gtaatggagg gagtggacga       720
     cgtatacctg atgatgcaga gcatcgaaaa tatagtggac ctagaaaaga ttgaggctag       780
     ggcgtcaatg agcggtgtcc taaggcttta cgcggctgac gctaatacat ttcgcaccat       840
     agtgaactgg ctcgagatcg aagagtatga gttccactgc taccagctta aagaggacag       900
     gccttacagg gtatgcgtga aaggcctgca ccacagtacg ctacatcacc aaatcaagga       960
     tgagctggaa aagatcgggc acaaggttct cgatattcac acaccgctta ggcgaaacga      1020
     accgggtacc tcaaaagcgt cgccagtcaa tatgttcttc ctaaatattg ctgctgcggc      1080
     aaacaataag gagatcctgg cggtaaaggc actatgccat atgagagtag ttattgagcc      1140
     tctccgcaag cgtaacgcta ttgtccagtg ccatcgttgt cagcagtttg gccacacagc      1200
     caaatactgc cgtaaggccc acatttgtgt gaaatgtgcc ggcgaacacc cagccaagga      1260
     ctgtaccagg ccacgcatcg agctgtgcac ttgctacaac tgtggcggcc agcatcctgc      1320
     aaactataaa ggttgcagca agctacaagc gttcctgcag cgatccagac ccagaagtgg      1380
     agtggctgga agaacagaag taagcgagcg accaactcca cggggcttag ctggaggtaa      1440
     ggagatcccc tcttctcgag gcggaatatc ttatgcagat gtggctagag ggtccattca      1500
     ccacaagcaa ccaatgagcc tgacgcacca gcaacagaag caacagcaac agccctatga      1560
     tggaagcccc agtcgtcaaa ggagccgcag ccggacaagg gcgtctaggg gtacactcca      1620
     gcgctcgacg gatgctagca gcagcattga agccatcctg cagacgctta atgagaacat      1680
     taattctttg cgctcgattc aagagaagca aatggaatta atgatgatga tgatgaagca      1740
     acagcaacaa cagtcacatc agcaggggca gattatcaat ctgctcactg ctctccaagc      1800
     gcgtcaagcg ccataatgat gccgctgcgc atcctagtgt ggaacgccga cggcgtatcc      1860
     acgaagttgc ctgaagtaga gtgcttcgtg cgacgtcacg aaatcgatgt attactgctc      1920
     agcgagacac actgcaaggg ggcagagacg cctaagctat tcggatttgt agcctacact      1980
     gccaatgatc cgagtggtgg caacgccaaa ggcggagcag ctatcttaat caaaaatagc      2040
     cttgcccact ttccgctaac accaatagcc actgccaagg tgcaacttgc gccggcggtt      2100
     attgaaacgg cacttggtcc tataagcttt ggagcggtct actgcccacc gagatttgca      2160
     tggactacgg acgagtttaa ggacattttg gaagagttcc agacgaagtt cattgttgca      2220
     ggcgattgga acgcgtccca ctggctctgg ggtgcgggaa ggagcaacca aagaggcatt      2280
     gcattagcga atctcgtcct aaattcggag gtggactcgc tagcaacagg aggaccaaca      2340
     agatacccgt acggctgtag aggctcacca gggtacatcg attttgcact gacaaagggt      2400
     gtgctgggca tccacgctaa cataagtgcg gttgttgagc ttagctccga ccacctgcct      2460
     ctggtaatta cgctggatgc gggggcaata tcctacccta agatggagcg gcttatcact      2520
     aggcgtacta acctggaggt attccaatcg caactggagt ccacactgcc cctcaacact      2580
     gccataaact ctggacagga cgttgatgat gctatcgaac tgctcaccaa caatatcaag      2640
     tcagcagcta gattggcaac tcgcagcata tctcggcagc ccgcggcaga tcgaatccca      2700
     atacccaggg agatcctgct gcttatagct gagaagaggc gcttacgcac taggtggatg      2760
     aggtctcggc acccgtcgga caaaacggaa tggaaccgag ctctgagtag gctccgatgc      2820
     gcgttggtgc tgcacaaagc cgcatggttc gacgaaaggc ttgccaatac cggagtcgaa      2880
     agcgaagcga cgcattcgct gtggaaggcc acgcgcgcaa tcaaaaggcg ttgcacgagg      2940
     aaggcgcctc tagtcgatag caacgggaca tggtgtcgga ccgacttggg acaagcggag      3000
     gtattcgctg cgcacctcgc cgagcgattt caaccattca agcttgccag cctgcaacag      3060
     gttgaagaaa ctcaggacca gctgaaccaa gcgcttcaaa tggatatgcc aatcacgccg      3120
     tttgaaccct gcgaggtagc cgaagtcatt gtgcgccaga gtaacaacaa agcacctgga      3180
     catgacgtca tctgcaacgc cacattgaag gccctgccca gacaagcgat cctctacata      3240
     acgttggttt tcaacgctat tgtgaggttg caatacttcc cttatcagtg gaagctcggg      3300
     ataatctcca tgatccacaa acctggcaag ccggaaaggg agcccgcctc ctaccggccg      3360
     atcagtctcc tcccttcaat ttcgaaggtg tttgagagac tgattgctgt ccggattgta      3420
     aggattatgg aagcccaggg gattacccct gagcaccagt tcggtttccg tgctggccac      3480
     tgtactgtcg agcagctcca tcgagtcgtc gagcaaattc tgactgccta cgacagtaag      3540
     gaatattgta acagcctctt cttggacatt cgagaagcgt ttgatcgagt gtggcacatt      3600
     ggactccaac tgaaaatcaa gcagacgctg cctgctccat attttgggtt gctgaaatcg      3660
     tacctggaag gaaggaggtt cgctgtgcgc tttcattcag caatttccac cgagcacaac      3720
     gtggcagctg gtgttccaca aggtagtgtc ctcggccccc tgctctactg cctgtatagc      3780
     cacgacatgc cgcagccaga tgtaagcctt tacgggaaat ctatgttggc cacatttgcc      3840
     gatgacgtgt gcgtcaccta caggtcccga tgcgagcacg acgcagccga tggtatccag      3900
     gactttgcat accggttctc ggaatgggca agacgatgga atattggcat caatagcagt      3960
     aaatccaaca acgtctgctt cactttaaag cggagaacgc caccgcccgt ctacatcgag      4020
     gaagtccccg taccacagcc gaacgcagca aagtaccttg gagtgcttct ggatcgcaga      4080
     ctcacatttt ccaagcatgt gaccgacatc agaacgcgcc tacgtgctaa ggtggcgaag      4140
     cactactggc tactttcttc gcgcagtaaa ttgtcgctat ccaacaagct gacaatttac      4200
     aaacagatcc tagcaccaaa ctggaagtat gggtgccaaa tctggggctt agcctgcgac      4260
     agccacatca aaaggatcca ggctattcaa aataaggtag caagactcat caccggctgc      4320
     gagtggtttg ttcgaaacac caccctgcac agagacctga aactcgcaac ggtatttgac      4380
     gaaataaaca agcactcgag cagataccat gacaggctgg agcgccacag aaatcggctg      4440
     gccagcgctt taaacagatc tcgcccacca aggaggctca atagaaggca accgagggat      4500
     ctcattaccc gatctccttt gacaagggtc cgcagaagct gacgcttatc ttaaatccta      4560
     tttgttatat gtgattgtta tgtaattgta gttaaattac tgtaaatttg aaaaagctaa      4620
     ctatagttag ccggcgagcc caaatgggct gaattaatag ataagaagga cacaaagggg      4680
     cttcaagact tccccgtatg ccttaataaa taaattaaaa aaaaaaaaaa a               4731
//
ID   BS3_DM      repbase;    DNA;    INV; 3084 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   16-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   BS3_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; ORF2; JOCKEY clade; BS3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3084
RA   Kapitonov V.V. and Jurka J.;
RT   "BS3_DM, a family of Jockey-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 1-1 (2002).
XX
RN   [2]
RP   1-3084
RA   Bao W.;
RT   "Sequence extended.";
RL   Direct Submission to Repbase Update (16-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   BS3_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   BS3_DM is a separate family. Members of this family are ~93%
CC   identical to the BS3_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. BS3_DM is 75%
CC   identical to BS2. The sequence is incomplete, a ~2500-bp 5'
CC   terminal
CC   portion of BS3_DM is not reconstructed yet.
CC   There are ~30 copies of BS3_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
CC   The 539-aa C-terminal portion of reverse transcriptase,
CC   BS3_DM-orf2p,
CC   is encoded by the BS3_DM consensus sequence (positions 2-1618).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(136..450,454..1107,1110..2912)
FT                 /product="BS3_DM_ORF2p"
FT                 /translation="RXATTVTAAGADXQSAHXSXSASXAIMMPLRILVXNE
FT                 XARSGILCGATRSMSCCSARLIVRRHRHQKYLDLSPTLPTTRATVTPKVCS
FT                 DPGQIQPSPLPSYTNSHQGATRVCRHRDGHGPVNFGAIYCPPRFIWNTGEF
FT                 KCILDQQCSKXLVAGDWNASHWLWGAGRCNRRGRALANLVLSSDMSSLATG
FT                 GPTRFPYGSRGSPGYIDFAVSRGILDMHAEIRSVAELSSDHLPLIITLDAT
FT                 ATAYPKMERLIGRHTDLERFHEHLESSLNLSTAINSERDLEEAVDTLTHNI
FT                 KAAARLATPSPVQRPTAAKIPITREILLLIAEEAFTQKMDEVSPPAGQSGL
FT                 EQSKVCFTSRLVEHKSAWFDDRLANTGIECDATHSLWNATRAIKRRCARKA
FT                 PLADNSGAWCRTFIEQAEVFAVHLAERFQPLNLASPQDVDATHDQLSQALQ
FT                 MDLPMQPITPSEIADVIAKQNPKKAPGHDTTCNSTLRTLPRCAILYITLLF
FT                 NAMVRLQYFPPQWKLGIISMIHKPGKPEKNPGSYRPISLLPSISKVFERLI
FT                 AARMVRIMEAKGILPEHQFGFRAGHCTVEQLHRVVEQILSAFENKEYCNAL
FT                 FLDVREAFDRVWHSGILLKIKNTLPAPYFGLLRSYLEKRRFAVRFHSALSN
FT                 EHNVAAGVPQGSVLGPLLYCLYSYDMPRPDVSLPGTSMLATFADDVCVTYR
FT                 SCCEHDAADDIQDFASTFAEWAKRWNIGINGDKSANVCYTLKRKTPPAVLI
FT                 DGTPVPQSNSAKYLGVILDRRLNFSKQVSAMRVRIRAAASKHFWLINSRSK
FT                 LSLSNKVTIYKQIIAPIWRYGCQIWGLACDSQIRRIQAAQNKIARMITGCE
FT                 WYVRNTTLHKDLKLATVFEAINMHSSRYHDRLERHRNRLAKALSRARPPRR
FT                 LHRRQPKDLIIRSPLTRARR"
XX
SQ   Sequence 3084 BP; 830 A; 792 C; 767 G; 680 T; 15 other;
     cgtctagggg tgcacttcag cgctckacgg atgctagcag magcattgaa gccatcctgc        60
     agacgctwaa tgaaaatatw awttctttgc gctcgattca agagaagcag atggaattaa       120
     tgatgatgat gatgaagaas agcaacaaca gtcacagcag caggggcaga twatcaatct       180
     gctcacwgct ctmcaagcgc gtcaakcgcc ataatgatgc cgctscgcat cttagtgkgg       240
     aacgaagstg cccgaagtgg aattttgtgc ggcgctacga gatcgatgtc ctgctgctca       300
     gcgagactca ttgtaaggag gcacaggcac caaaaatatt tggatttgag tcctacactg       360
     ccaacgaccc gagcgacggt aacgccaaag gtgtgcagcg atcctggtca aatccagcct       420
     agtccacttc cctcttacac caatagccac tgacaaggtg caactcgcgt ctgcaggcat       480
     cgagacggcc atggccctgt caattttggc gcgatatact gccctccgag gttcatatgg       540
     aatacgggcg aatttaaatg cattctggat caacaatgtt ccaaastcct cgtcgcgggc       600
     gactggaatg catcccactg gctatgggga gcggggagat gcaatcgaag agggcgagcg       660
     ctagcgaatc tggtcctaag ctcagatatg agctccctag caaccggagg tcctacaaga       720
     ttcccgtacg gcagtagagg ctccccaggc tatatagatt ttgctgtcag caggggcata       780
     ctggacatgc atgctgagat acggtccgtt gctgagctca gctccgacca cctaccgctt       840
     ataatcacac tagatgcaac agctacagct tatcccaaga tggagcgact aatcggtagg       900
     cacactgacc tggaacgatt ccatgagcat cttgagtcct ctctgaacct gagtacggcg       960
     ataaactcag aaagggacct agaagaagct gttgacactc tcacccataa tatcaaggct      1020
     gcagccagac tggcaactcc tagcccggtg cagaggccca cagcagctaa aatcccgatc      1080
     accagagaga ttctgctcct tatagctgag aagaggcgtt tacgcaaaag atggatgagg      1140
     tctcgccacc cgctggacaa agcggattgg aacagagcaa agtgtgtttt acatcgcgcc      1200
     tggtcgaaca taaatcagct tggttcgatg acaggcttgc aaacactggt atcgaatgtg      1260
     atgcgacgca ctcgctatgg aatgctacgc gcgctatcaa aaggcgatgt gcgcggaaag      1320
     cgccattggc cgataacagt ggkgcatggt gccggacttt tatagagcaa gccgaagtgt      1380
     ttgctgttca cctcgcggag cgattccagc ctttgaacct cgccagtccc caggatgttg      1440
     acgcgactca cgaccagctg tcccaagcgc tccaaatgga cttgccgatg caaccgatca      1500
     ctcccagcga gattgctgac gtcatcgcca aacaaaaccc caaaaaagct ccagggcatg      1560
     atactacctg caactccacc ctaaggacac taccgagatg tgcgatcctc tacattacgt      1620
     tgttattcaa cgctatggtg aggctgcaat acttccctcc acagtggaag ctcggtatta      1680
     tctccatgat tcacaaacct ggaaagcctg aaaagaaccc tgggtcctac cggccaatca      1740
     gtctcctccc ttcgatctcg aaggtgtttg agagactgat tgctgcccgg atggtcagga      1800
     ttatggaagc gaagggtatc ctgcccgagc atcagtttgg ttttcgtgct ggacactgta      1860
     cggtagaaca actacaccga gtggtcgagc aaatcctatc ggctttcgaa aacaaggagt      1920
     actgcaatgc acttttcctg gatgtacgtg aggcgttcga tcgggtgtgg cactccggta      1980
     tcctgctcaa aattaagaat acgctgcctg caccatactt cggcctcctg aggtcgtatc      2040
     tcgaaaagag aagatttgcg gtacgattcc actcggctct gtcaaatgag cataatgtgg      2100
     cagccggagt accacaggga agtgtacttg gtccgctgct ttactgcctg tacagctacg      2160
     acatgccacg gccagacgtt agcctacccg ggacgtcaat gttggccaca tttgctgatg      2220
     acgtgtgtgt cacctacagg tcctgctgcg aacacgatgc tgctgacgac atccaggact      2280
     tcgcatcaac atttgcggaa tgggcaaaac gttggaacat tggcatcaat ggtgacaaat      2340
     cagcgaatgt gtgctacacg ctgaaaagga aaacaccacc ggctgtgctc atcgatggca      2400
     cccctgtccc ccagtccaat tcagccaaat atcttggtgt aatcttggat cggagactaa      2460
     acttctcgaa gcaagtgagt gcgatgagag tgcgtatacg tgcagcagcg tcaaagcact      2520
     tctggctaat taattcgcga agtaaattgt cactctccaa caaggtgaca atttacaagc      2580
     aaattatagc gccaatatgg aggtatggtt gtcagatttg gggcttggct tgcgacagcc      2640
     aaattcgtcg cattcaggct gcccaaaaca aaatcgccag gatgattacc ggctgcgaat      2700
     ggtacgtaag gaacacaacc ctgcacaaag acctcaagct agccactgtc tttgaggcaa      2760
     taaacatgca ctccagccgg taccacgaca ggctagagcg ccacagaaat cgcctagcca      2820
     aggcactgtc cagagctcgc ccaccaagaa ggctccacag gagacagccg aaggacctca      2880
     tcatacggtc ccccttgacg agagccagga gatgatgatg atctcataat tgttatattg      2940
     ttaattgtta tatttgtatt attgttttgt tacagctaac ttttgttagc cggcgcgcct      3000
     gaaagggctg aattaatagc gaccaaggtg acaaaggggt tttcagctac cccgtatgcc      3060
     ttaataaagt ataaaaaaaa aaaa                                             3084
//
ID   BS4_DM      repbase;    DNA;    INV; 754 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   11-NOV-2002 (Rel. 7.10, Last updated, Version 1)
XX
DE   BS4_DM is a non-LTR retrotransposon - a partial consensus
DE   sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; BS; BS4_DM;
KW   JOCKEY clade; ORF2; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-754
RA   Kapitonov V.V. and Jurka J.;
RT   "BS4_DM, a family of non-LTR retrotransposons from the Jockey
RT   clade.";
RL   Repbase Reports 2(10), 2-2 (2002).
XX
DR   [1] (Consensus)
XX
CC   BS4_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   BS4_DM is a family of retrotransposons that were
CC   active in the D. melanogaster genome a few million years ago.
CC   Two copies of BS4_DM are present in the sequenced genome, they
CC   are 7% divergent from each other.
CC   There is a 68% nucleotide identity between BS4_DM and BS. Protein
CC   sequences encoded by these elements are also 68% identical to
CC   each other. Therefore, a strong stabilizing selection was
CC   channeling
CC   evolution of these non-LTR retrotransposons.
CC   BS4_DM encodes BS4_DMp, a portion of the reverse transcriptase.
CC   Approximately, a 4-kb 5' portion is missing in the current
CC   version of the BS4_DM consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..576
FT                 /product="BS4_DMp"
FT                 /translation="SYLDGRKLMVRYTDTYSAPCQMLAGVPQGSVLGPLLY
FT                 SLYTADLPRPTYENAQYPSKAIIATYADDIAVLYRSKCRIEAANGLQGYLQ
FT                 TLSAWSRRWNMKVNPLKTFNPCFTLKRLATPAIQFEGVTLEQPSQAKYLGI
FT                 TLDKRLTFGPHIKTITKRCGQRMQHLRWLINKRSTMSLRAKRAVYVDCIAP
FT                 TD"
XX
SQ   Sequence 754 BP; 240 A; 165 C; 154 G; 195 T; 0 other;
     tcatatctgg atggacggaa gcttatggtc aggtacacgg atacctactc cgctccctgc        60
     caaatgttag ctggagttcc gcagggcagc gtccttggcc cgctgctcta ttctttatat       120
     actgctgacc tacctagacc tacctacgag aatgcgcaat acccctctaa ggctatcatt       180
     gcgacttacg ccgatgatat tgcggttctt tacagatcca aatgccgtat tgaagctgca       240
     aatgggttgc aaggatacct tcaaacttta tcggcgtgga gtagaaggtg gaacatgaag       300
     gtcaatcctt taaaaacatt caatccatgt ttcacactta aaaggcttgc tacaccagca       360
     atacaatttg aaggtgtgac attggaacag ccatctcaag cgaaatacct cggcataacc       420
     ttagataagc gccttacttt tgggccacac ataaaaacaa taaccaaacg atgtggccaa       480
     agaatgcagc acctaagatg gctgataaat aaaaggagca caatgtcgct aagagccaaa       540
     agagcagtat acgtggattg tatagcccca actgacttaa aagactggga ttcagcaaga       600
     cgattcgtta atcgtccagc cctcccaaaa cctgctagta atcctcgtga gaggtttggt       660
     tcattaagat ttgtttttat atgtgttgtt aagatgctaa tcagaatgca tggtttcaac       720
     gcttaataaa ataatatatt aaaaaaaaaa aaaa                                   754
//
ID   BURDOCK_I   repbase;    DNA;    INV; 5860 BP.
XX
AC   U89994;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Drosophila melanogaster BURDOCK retrotransposon - internal
DE   sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag; pol;
KW   Gypsy superfamily; internal portion; BURDOCK_LTR; BURDOCK_I.
XX
NM   BURDOCK_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5860
RA   Tchurikov A.N., Gerasimova I.T., Johnson K.T., Barbakar I.N.,
RA   Kenzior L.A. and Georgiev P.G.;
RT   "Mobile elements and transposition events in the cut locus of
RT   Drosophila melanogaster.";
RL   Mol. Gen. Genet 219(1-2), 241-248 (1989).
XX
RN   [2]
RP   1-5860
RA   Tchurikov A.N., Ponomarenko A.N. and Krasnov N.A.;
RT   "burdock - a novel retrotransposon element in Drosophila
RT   melanogaster.";
RL   Unpublished.
XX
RN   [3]
RP   1-5860
RA   Tchurikov A.N., Ponomarenko A.N. and Krasnov N.A.;
RT   "BURDOCK_I.";
RL   Direct Submission to Genbank (19-FEB-1997)Genome Organization,
RL   Engelhardt Institute of Molecular Biology, Russian Academy of
RL   Sciences, Vavilov Str. 32, Moscow 117984, Russia.
XX
DR   GenBank; U89994; Positions     276    6135.
XX
CC   BURDOCK is a short retrotransposon with long terminal repeats and
CC   a
CC   single open reading frame (ORF). Its LTR is reported in Repbase
CC   as
CC   BURDOK_LTR. LTRs flanking BURDOCK_I in U89994 GenBank sequence
CC   are
CC   identical, it may indicate that BURDOCK is an active element.
CC   The polypeptide encoded by the BURDOCK ORF contains two adjacent
CC   regions homologous to the gag and pol polyproteins of the Gypsy
CC   mobile element.
CC   The target site sequence of the BURDOCK insertions is similar to
CC   the Drosophila topoisomerase II cleavage site.
XX
FH   Key           Location/Qualifiers
FT   CDS           289..1779
FT                 /product="BURDOCK_I_1p"
FT                 /translation="MSDSDNLLDNLVSSLNKWSAHQASRQNSAEKNNKSSD
FT                 NWWSKTKTTSEMEFEAQLKAIVESAVAGALAVQKQSFEKQLQEMNERIGKL
FT                 TVNTPEVETYVDAEIRPGVVCSEPLDILKSLPDFDGKSETYVSWRKAAHVA
FT                 FKVFKDYEGSSTFYQALGIMRNKIKGPANTVLASFNTPLHFKAMISRLDFT
FT                 YSDKRPIYLIEQELSTLRQGDMTLTEFYDEVEKKLTLLTNKTIMTFDSALA
FT                 MSLNEKYRTDALRVFVTGAKKSLSDILFAKGPKDLPTALALAQEVESNHER
FT                 YQFALIYSKNIGDRGQKIEQRHSDKDRNSIMPMQTKNPYFSKRQVHTYDNQ
FT                 ERQDPVQLTNPDVSMRSRRTGNFGQTPFPTQGNIWPSQQQNSWPSQQQYSW
FT                 PSQQQNSFRTQNQFASQPQQQNTSQAQGHFGYAQASKRPTSGSARFTGPKQ
FT                 QRINYLPHEKGQCEEDTDGYQKEAEAEVDDYEDELVNYDHVHFLATNPCYR
FT                 T"
FT   CDS           1719..4841
FT                 /product="BURDOCK_I_2p"
FT                 /translation="GRTSELRSCSFFSHKSLLPYIEREIAGRTIKLLIDTG
FT                 ASKNYIQPLPELKNIMPVQNKFTVKSLHGCNTVKQKCFIKLFNTSVQFFIL
FT                 PSLSSFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSVNFANI
FT                 ENIVVPNQISNKFHTMLRNRLAVFAEPEEALPYNTNIVATIRTEDDQPIYS
FT                 KLYPYPMGVSDFVNKETHALLKDGIIRPSSSPYNNPVWVVDKKGTDEEGNT
FT                 KKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQIL
FT                 LAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAIDDVVRDRIGKSCY
FT                 VYVDDVIIFSNGIEDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVEYLGF
FT                 MVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFASIAR
FT                 PLTDILKGENGKVSASQSKKIPISFDERQCSAFEKLKNVLVSENVMLLYPD
FT                 YRKAFDLTTDASAFGLGAVLSQDGKPVTMISRTLQDRELNFATNERELLAI
FT                 VWALKSLRNYLYGVKNLNIFTDHQPLTYAVSDRNPNAKIKRWKAFIDEHNA
FT                 KIFYKPGKETYVADALSRQAIHVLEDEPQSDIATIHSEISLTFTIETIDKP
FT                 VNCFRNQIVIDEGTADSTRTFVIFGSKTRHLIQFLDKETLIGRIRDVVKPD
FT                 VVNAIHCELPVLAFIQNSLVNDFPATTFRHTMKMVSDIFNQTEQREIVSLE
FT                 HNRAHRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRHPQKQI
FT                 LGRTPIPSHVGETLHIDIFSTGRNYFLTCIDKFSKFAIVQPIGSRTITDLE
FT                 PAIMQLMNFFPHSKTIFCDNEPSINSESIKSLLKNRFNVDIANAPPLHSTS
FT                 NGQVERFHSTLLEIARCLKLDSGMNDTVNLILQATIEYNKTVHSVTNRRPI
FT                 DIIHSTPPELANEIVEMVNEAQEKQLRRENVTRRDRTFEVGETVMVKQNNR
FT                 LGNKLTPRYREELIEADLGTTVLIKGRVVHKDNLR"
XX
SQ   Sequence 5860 BP; 2027 A; 1151 C; 1117 G; 1565 T; 0 other;
     ggcgcccaaa cggatataaa aacctacgat aactgaataa ttataaataa ataacaaaag        60
     gaggatccgg agacaaaacc agcggctttg gctaattaac tctaacctaa gaaataaaaa       120
     tttgctgatt acataaaata taatattaat tactaagacc atctacctta aaattgtttg       180
     ttaatcacta ttattatatt gtaagtataa cgcttattga acgaattaaa aatattatta       240
     ttattattat attataacct atgcaaagag tattgataat aaaaatacat gagtgacagt       300
     gataaccttt tagacaacct agtgtcaagc ttaaataaat ggtcagcgca ccaggcaagt       360
     aggcaaaaca gtgcagaaaa aaataataag tcatcagata attggtggtc aaaaacaaag       420
     acaactagcg aaatggaatt tgaagctcag ttaaaagcga tcgtagagag tgctgttgcc       480
     ggtgcgctcg cagtccaaaa acaatcattt gaaaagcaat tgcaggagat gaatgagcga       540
     atcgggaaat taacagtgaa caccccagag gtggaaactt atgtagatgc tgaaattaga       600
     ccaggtgttg tctgtagcga gcctctagat atacttaaat ctctgccaga ttttgatggc       660
     aaaagtgaaa catatgtgtc gtggagaaaa gcggctcatg tcgcttttaa agttttcaaa       720
     gattacgagg gaagttcaac attttaccaa gctcttggta ttatgcgaaa taaaataaaa       780
     ggtccagcga atacagtatt ggcttctttt aatactccgt tacatttcaa agcaatgatc       840
     agccgtcttg atttcacata ttctgacaaa aggccgatct atctaatcga acaagagcta       900
     tcaactttgc gacagggaga catgactctt actgaattct acgatgaagt cgagaaaaaa       960
     ctgaccctac ttaccaacaa gacaataatg acatttgata gtgccttggc gatgtcactg      1020
     aatgaaaagt acaggacgga cgcgttacgt gtatttgtaa ccggagctaa gaaatcgttg      1080
     agcgacattc tttttgcaaa aggtccaaaa gatttaccaa ctgctctcgc tttagcgcaa      1140
     gaggtcgagt cgaaccatga gcgttaccaa ttcgccctta tttattctaa aaatattgga      1200
     gacaggggtc agaaaatcga acaaaggcac agcgataagg atagaaactc aatcatgccc      1260
     atgcaaacta aaaacccata ttttagcaag cgtcaggtgc atacttatga taaccaggaa      1320
     agacaagatc cagtccagtt aacaaatcct gatgtatcca tgcgatctag aagaactgga      1380
     aattttggac aaactccatt tccgactcag ggaaatattt ggccatccca acagcaaaat      1440
     tcttggccat ctcaacaaca atattcttgg ccatcccaac aacaaaattc atttcgaaca      1500
     caaaatcaat tcgcatcgca accccaacag caaaacacaa gtcaggctca gggacatttt      1560
     gggtatgcgc aagcatcaaa aagaccaacg agtggcagtg caaggtttac agggccaaaa      1620
     cagcagagga tcaactactt acctcatgag aaaggtcaat gtgaggaaga tacagacggt      1680
     tatcaaaagg aggcagaagc ggaggttgat gattatgagg acgaactagt gaattacgat      1740
     catgttcatt ttttagccac aaatccctgc taccgtacat agaaagagag atagcaggga      1800
     gaaccataaa acttttgatt gacaccgggg cttcgaaaaa ttacatacag cccctccctg      1860
     aattaaaaaa cataatgccg gtacaaaata aattcacggt aaaatcgctt catggttgca      1920
     acaccgtcaa acagaaatgc tttattaagc tatttaacac atctgttcaa ttctttattc      1980
     ttccaagtct ctctagtttt gacgcaataa taggacttga ccttttgaaa cagggaaatg      2040
     caacgttaga ttttaagaac aaaacgttga atatcaacaa tgaagtggaa tctattcagt      2100
     ttttgagatg tgacagcgta aatttcgcca acatagagaa tattgtggtt ccaaatcaga      2160
     tatctaataa attccataca atgcttcgaa accgattggc cgtctttgcg gaaccggaag      2220
     aagcactgcc gtataatacc aacattgttg ccacaatacg tactgaggac gaccaaccca      2280
     tttactcaaa actctatccg taccccatgg gcgtatcgga ttttgtgaat aaggagacac      2340
     atgctttgtt aaaggacgga attatcaggc cctcgtcgtc accttacaac aatccggttt      2400
     gggtagtcga taaaaaaggt acagatgaag agggaaatac taagaaaagg ttggttatag      2460
     attttagaaa actaaattta aaaacaatcg acgacaagta ccctatacca aacgtagtat      2520
     ggatcttgtc aaatttggga aaagccagat tctttacaac ccttgacctt aaatcggcgt      2580
     ttcaccaaat tctgctcgca gaaaaggata gagcgaaaac tgccttttca gtaggaaatg      2640
     gaaaatacga gttttgccgt ttgccgtttg gcttgaaaaa tgccccaagt atttttcaac      2700
     gtgctattga tgatgttgtt agggaccgta taggaaagtc atgttacgtt tacgttgacg      2760
     acgtaataat attttcaaac ggaattgagg accacgtaaa cgacgttgct tgggtactag      2820
     acagactgtc tggggcaaac atgagggttt ctaaagagaa atcgtttttc ttcaaggaaa      2880
     gcgtcgagta tctcggattc atggtgtcaa gtggaggtat cacaaccagt cctagcaaag      2940
     tagaggctat tcagaaatat aatcaaccta ctaatctgtt tagtgttcga tcgtttttag      3000
     ggctagcaag ttattaccgc tgctttatta aggacttcgc ctctattgct agaccactca      3060
     ctgacattct gaagggtgaa aacggaaagg tttccgcaag ccagtctaaa aagataccaa      3120
     tttctttcga tgaaagacaa tgttctgctt ttgagaagct taaaaatgtt cttgtctccg      3180
     aaaatgtaat gttattgtat cccgattata gaaaagcctt tgacttaaca acagacgctt      3240
     cggcttttgg cctgggggca gtcttatcac aggatggcaa gcctgttaca atgatttcga      3300
     gaactttaca ggatagagaa cttaatttcg caacaaatga acgagaactt ttggccatcg      3360
     tttgggcttt aaagtctctt aggaactatc tatatggtgt caaaaactta aacattttta      3420
     cagatcacca gccgttaaca tacgccgtgt cagataggaa tccaaatgca aaaatcaaga      3480
     gatggaaggc gtttatagac gaacataatg ctaaaatttt ctataaacct ggcaaggaga      3540
     cctatgttgc cgatgcacta tccaggcagg ctattcatgt cctagaggac gaaccccagt      3600
     cagacattgc aacaatacat agcgaaattt cattgacttt tacaatcgaa actatcgaca      3660
     agccggttaa ctgttttaga aaccaaattg tgatagatga gggcaccgca gactcaactc      3720
     gaacttttgt tattttcgga agcaagacaa ggcatctaat acagtttcta gacaaagaga      3780
     ccttaatcgg aagaattcgt gatgtggtta agccggatgt agtgaatgcg atacactgcg      3840
     aattacctgt actagctttc attcaaaaca gtcttgtaaa tgactttcca gcaacaacct      3900
     tccgacacac tatgaaaatg gtcagcgaca tttttaatca aactgagcaa cgggaaatag      3960
     tgtctttgga gcacaacaga gcgcataggg cagcacagga gaatgtaaaa caaattcttc      4020
     aatactactt tttccctaaa atgtcacaaa tagccgctac ctttgtttct aactgcttgg      4080
     tttgtcaaaa agccaaatac gaccgccatc cgcaaaagca aatcctcggg agaacaccta      4140
     ttccgtcaca tgtaggcgag acattgcata ttgatatatt ttctacgggc aggaattact      4200
     ttttgacatg tattgacaaa ttttccaaat tcgctattgt gcaaccaatc ggctctcgaa      4260
     cgataactga tttagaacct gcaattatgc aactaatgaa cttttttccc cattcaaaga      4320
     caatattttg tgacaatgaa ccgtccataa attccgagtc aatcaagtca cttttgaaaa      4380
     atcgttttaa tgttgacata gcgaacgcac ctccacttca tagtacctca aacggacagg      4440
     ttgaaaggtt tcacagcacg cttttagaaa tagctcgatg cctgaaactt gacagtggaa      4500
     tgaatgatac agtcaacctt attcttcagg caacaataga atacaataag acggtgcact      4560
     cagtcaccaa tagaagaccg atcgacatta ttcattcaac tcctcccgaa ttggctaacg      4620
     agatagtaga aatggttaac gaagctcagg aaaaacagct aagaagagaa aatgtaacaa      4680
     gacgagacag aacctttgag gtgggagaaa ccgtcatggt aaaacaaaac aatcgcttgg      4740
     gaaataaact aaccccacgg tatagggaag aactaatcga agcagacctc gggacaacgg      4800
     tcctcataaa agggagggtc gttcataaag ataatctacg ctaggtttag tatttctttt      4860
     ccttttgtga ccatcgccaa gttagcaaaa tacaaacgtg aaatctgaac actagtaaaa      4920
     gagtttgcaa acatttttca attaaatatt tgtcaaatcc ttcttattta atctttaaac      4980
     attttgtatt atttccgctt catcctcttt agaaaatttt aaaggtatgt gatgaaatgc      5040
     tagacccgaa tgatttgaaa acttaaagtc cacgcaacca caaatatttc ctgaaactac      5100
     catagaaaat aaatgcatta ccaaaacggc ataataacag tatagcgcac tcactctaat      5160
     tagatttcaa attcccgatt aaaaaaaaaa taaaacacta atgttatcaa taccctttcc      5220
     tgattctgtt caactaaaat aggaaaatca atacttgcaa tcaataagcg ttttactaca      5280
     tactttaata tcaaaatatc tgaatgaact ttattataaa attataattg ttatacttaa      5340
     ttattgtcaa aactttagta ttaaaactgt aactacctct taagtagatg agaagagtag      5400
     aagagggaat taagatctat caacgtagta tctgctaaag acgtaaagat gcggcaacta      5460
     tttctgcgcc tgggtactga aacgacgaac tgaataatat ctgccatcag acgccaacca      5520
     gagtgcgttc aacacatacg ttttgatggt caactagttc aaccaacatc agcatcatcg      5580
     tcgtcaacaa gtcgacggtt acaataaaga ttttttccaa gttcgctacg atcatctcca      5640
     gaaccttgtt gcgaacccat gacatggaga atcagcagca tttacgaact tctcggatca      5700
     tccagacacg cagagctgcc ttcccttcga tggtttaacg cagtaccagg ttggcagtat      5760
     gggaacttag tgcacaacca atgttacccg taagatccgc tttcaaatag atttgccaat      5820
     tgtaaaaagt ctgtggacag ccttcgtctt agaaggggag                            5860
//
ID   BURDOCK_LTR repbase;    DNA;    INV; 275 BP.
XX
AC   U89994;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   LTR from D.melanogaster BURDOCK retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; BURDOCK_I;
KW   BURDOCK_LTR; Gypsy superfamily.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-275
RA   Tchurikov A.N., Gerasimova I.T., Johnson K.T., Barbakar I.N.,
RA   Kenzior L.A. and Georgiev P.G.;
RT   "Mobile elements and transposition events in the cut locus of
RT   Drosophila melanogaster.";
RL   Mol. Gen. Genet 219(1-2), 241-248 (1989).
XX
RN   [2]
RP   1-275
RA   Tchurikov A.N., Ponomarenko A.N. and Krasnov N.A.;
RT   "burdock - a novel retrotransposon element in Drosophila
RT   melanogaster.";
RL   Unpublished.
XX
RN   [3]
RP   1-275
RA   Tchurikov A.N., Ponomarenko A.N. and Krasnov N.A.;
RT   "BURDOCK_LTR.";
RL   Direct Submission to Genbank (19-FEB-1997)Genome Organization,
RL   Engelhardt Institute of Molecular Biology, Russian Academy of
RL   Sciences, Vavilov Str. 32, Moscow 117984, Russia.
XX
DR   GenBank; U89994; Positions       1     275.
XX
CC   This is LTR sequence from BURDOCK retrotransposon; BURDOCK's
CC   internal sequence is BURDOCK_I.
XX
SQ   Sequence 275 BP; 96 A; 54 C; 43 G; 82 T; 0 other;
     agttaacaca atcacaaaac acccgaaata tagtcgtaag cctcaagtgc ttttcccatc        60
     tatagatcga gctttaccta taagaaactg taacttgtta agctttagag ataagaactc       120
     ttgctatact taagtcagtc gattttggaa gattagaagc gtcggtcatc gccacgtact       180
     tactattcgt ctcattaagt gcagaccgcg caagcctatt gtaattaata aacttacgct       240
     aataaatata tggaaaatct actaaaatga taatt                                  275
//
ID   But2        repbase;    DNA;    INV; 2775 BP.
XX
AC   AH010794.2;
XX
DT   13-MAY-2017 (Rel. 22.05, Created)
DT   13-MAY-2017 (Rel. 22.05, Last updated, Version 1)
XX
DE   But2 is a DNA transposons that was first described in Drosophila
DE   buzzatii. But2 is a member of Tip group of hAT superfamily.
DE   Drosophila buzzatii BuT2 element is predicted to harbor a
DE   five-exon gene encoding a 643-aa putatively functional
DE   transposase. BuT2 sequences are present in five Drosophila groups
DE   and were horizontally transmitted between some of them. Some
DE   species also have short nonautonomous sequences related to BuT2.
DE   These sequences have conserved TIRs and probably originated by
DE   deletion of BuT2 autonomous copies and may represent MITE copies.
XX
KW   hAT; DNA transposon; Transposable Element; But2.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-2775
RA   Rossato D.O., Ludwig A., Depra M., Loreto E.L., Ruiz A.
RA   and Valente V.L.;
RT   "BuT2 is a member of the third major group of hAT transposons and
RT   is involved in horizontal transfer events in the genus
RT   Drosophila.";
RL   Genome Biol Evol 6(2), 352-365 (2014).
XX
DR   EMBL/GenBank/DDBJ; AH010794.2; Positions     903    3677.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(366..864,925..1331,1486..1985,2044..2436,
FT                 2495..2627)
FT                 /product="But2_1p"
FT                 /translation="MPKIYKQKPRTVWMQDPAFKDWLSVDAADEGKCYCKY
FT                 CKSSINAKLSDLHAHAKTAKHKATSAAFAQPNKIKFVSSIALKTCEQEAGL
FT                 CLYIATHSSIKPVGHLGLLCKEKFQDATQLKLHRTKCTTIIKNVLAPHFIE
FT                 LLKEDTGDAKYSLLIDESTDISVYKTLGVAINYFSSKRSVMVSTFLSIVPL
FT                 EAGDSKTIVKSLCEEQNNFNLKLANLIGIGTDNASVMVGSKQSVYTELKQM
FT                 VPALVLIKCVCHSLQLAVSNACKTVPEVLEYIVAQTYYWFSCSTKRQTEYK
FT                 KIYQIINSDQDPLKIPRVCETRWLSIEKAVSRILQQWIELKLHFTIAATNE
FT                 KCLMAQTLQKLYSDDVNHLYLLFLQPVLAQMQHINKIFQTSTGDSSKLLSD
FT                 LVYTINSFKSKIIPPDVDIDILKEDFEQFVKYDCYLGYAFETKLKEKKISN
FT                 EIETEIRLKCSNFIVALINELKQRLPDNFEILQQVNLFSVEKILCAQKADI
FT                 VNILVHFKVESTDIEDILTQYASIHLIKWCNTDETIPFWAEVLRYRDGAGT
FT                 KRFSALASFALNLLSLPWSNAEVERVFSQMNIIKTKLRNSMANRTLNAILH
FT                 IRYGLRLQKKCCHDYKLPAACLRKIGTNETYTNQNDEDEVIDEFL*"
XX
SQ   Sequence 2775 BP; 926 A; 469 C; 514 G; 866 T; 0 other;
     cactgctgcc aatttagcta ttttcccact agatctagtg ggttgcaaca aggaaatgcg        60
     ggataaattg tgaaatagcg gctagcggga attatagcta tttttcatga aaaattagct       120
     ttacttcata tttttgcaac atctggtaac ttggtgtatt ttatctgtgc tctctgctct       180
     atgatgccac attttcatac gtatagtatt ttttcatatg aatgacaaca aacatcgata       240
     agccagacga gcattcaatc ttatcgatgt ctgtgaagtc taccgaatcg tgttttatgc       300
     catcaccaag agggtatttc acaagtttta aagcgtagag cgtagcttac aagtttacaa       360
     gtacaatgcc gaaaatttat aaacaaaaac cgcgcacagt atggatgcaa gatcctgcat       420
     ttaaagattg gttaagtgta gatgcagctg atgagggcaa atgctattgc aaatactgca       480
     aatctagcat taatgctaaa ctttcagatt tgcacgcaca tgccaagact gctaagcaca       540
     aggcaacttc agcggctttt gcacagccta ataaaattaa atttgtttct tcaatcgcat       600
     tgaaaacttg cgaacaagaa gcgggattgt gtttatatat tgcaacacat tcttccatca       660
     aacctgtggg ccatttagga ttgctgtgca aagaaaagtt tcaggatgcc actcaattaa       720
     agctccatag gacaaagtgc acaaccataa taaaaaacgt tctagctcct cacttcatag       780
     agctactgaa ggaggacacc ggtgatgcga agtatagctt attgattgat gagagtaccg       840
     atataagtgt gtacaagact cttggtaagt aataattcta atcattctga aacaccatct       900
     taatcataat tactttctgt ataggtgttg ccataaacta ttttagctca aaacggagcg       960
     ttatggtctc cacattttta tccatagtcc cgctcgaggc aggcgactca aaaacgatag      1020
     tgaaaagcct ctgcgaggaa caaaataact ttaacttaaa gcttgcgaat ttgattggaa      1080
     tcggcacgga caacgcaagt gttatggttg gttccaaaca aagtgtttac acggagttaa      1140
     aacaaatggt tccggcttta gttttaatca aatgtgtatg ccattcactg caattggctg      1200
     tgagtaatgc ctgcaaaact gttcccgagg tcttagagta cattgttgct caaacatatt      1260
     attggttttc ctgcagtacg aaaagacaaa ctgagtacaa aaaaatatat caaattataa      1320
     attccgacca ggtgaaagag acatcttttt gcatttttca acattaacaa ttgtgtgcgt      1380
     ttcgttctat ttaacatgcg tgtgtaagta gtttgtgttt tgtacatgtt tgtttatata      1440
     gatatgtata tatataatgt atatgaataa catgtatttc tttaggatcc tcttaaaata      1500
     cctcgagtat gcgagacaag gtggctgtcc attgaaaaag cagttagccg aattctacag      1560
     cagtggattg aactgaagct tcacttcacc attgctgcaa caaatgaaaa atgtcttatg      1620
     gcgcagacgt tgcaaaaact ttatagtgat gacgttaatc atttgtatct tctgttcttg      1680
     caaccagtgc tagcccaaat gcagcacatc aataaaattt ttcaaacaag cactggagac      1740
     tcaagcaaac tattaagtga tctcgtatat acgataaatt catttaaaag taaaattatt      1800
     ccccctgatg tcgatattga tattttaaaa gaagacttcg aacaatttgt taagtatgac      1860
     tgctatttgg gatatgcatt tgaaacaaag cttaaagaaa aaaaaatctc gaatgaaata      1920
     gagacagaaa ttcgtttgaa atgttccaat tttatagtag cattaatcaa cgagttaaaa      1980
     cagaggtatg taattatgaa taagttgtga tattttgttt tattaaatta taaattgttt      2040
     caggttgcct gataattttg aaatccttca gcaagttaac ttgttttctg tagaaaaaat      2100
     actatgtgca caaaaagctg acattgtgaa tattctcgtg catttcaagg tggaatccac      2160
     cgatattgag gacattttga cgcagtacgc gagcatccac ctaattaagt ggtgcaatac      2220
     agacgagaca ataccctttt gggccgaagt gttaagatat cgagatgggg cagggacgaa      2280
     acggttttcg gcactggcat catttgcact aaacctttta tcgttgcctt ggtcgaacgc      2340
     agaggtagaa agggttttta gtcaaatgaa cataataaaa acaaagctaa gaaatagtat      2400
     ggctaataga actttgaacg ccattttaca tataaggtat ttttctgtta atattttata      2460
     aaattattat ttacatttaa ttttatattt gtagatacgg actacgcctc caaaaaaaat      2520
     gttgccacga ttacaaatta ccagcagcat gtttaagaaa gataggtacc aatgaaacct      2580
     acacaaatca aaacgatgaa gatgaagtga ttgacgaatt cttataaaat attgaaataa      2640
     accggaaaaa aaaaatttta atctaacgtt tttttttacg ttttttttta gctatgaaga      2700
     aatatttcta gctatttcta gcttttttca aaggctgatc tagcgtgtcc atgcaacaaa      2760
     ttgttggcag cactg                                                       2775
//
ID   CACTA-1_AA  repbase;    DNA;    INV; 8226 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   01-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; CACTA-1_AA.
XX
NM   CACTA-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
RN   [2]
RP   1-8226
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: Mariner insertion is screened out.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(349..1051,1319..2595)
FT                 /product="CACTA-1_AA_1p"
FT                 /translation="MDLPNLISEKDKKIWRKLKRNGNFARTKKVLIQRAKK
FT                 IEPNKLLNHGIINHAHKECISNVSEVPDQIGSSIQCSENLNPQKDEVLDSD
FT                 SEPESEINDTNPKADMEDLREDLKNWAIKFQIKHTAVNSLLSLLKSHIPDN
FT                 ILPKDARTLVGTPRSSCVTSDPNIGGQYWHYGLPKILKHTLSTYGELPNKL
FT                 SLNVNIDGLPTFKSSSTSFWPILVNVHELRSTMSPLVVGVFCGASVIGHNG
FT                 YNSCLKCVTEGEYSYAFKTMIFPEMNAALRNDSDFRSRTYEGHHKFDSILE
FT                 DIRGLDMIKDFPIGDSLHLIDLGIMKRLLNGWKAGTLNNYNARWSAKQIEN
FT                 ISCFLKTCKLPREFKRPVRGLDHLPRWKGSELRTFLLYISVVVLKKFFESD
FT                 EILDHFLNFFCAIQICMRYDQNPENYEVARCLIIDFLNGVKTLYGEQLFCS
FT                 NFHSLIHLIDDVERFGPLDTFDAYPFESRLYTLKRLIRTGNLPLSQVARRI
FT                 SEMQENVSQPSEPKQRPILKRKLSGNNFSDQHFSQIEKNSDVYSFVDFGDF
FT                 CIDTQKTVDKWILTRNMKVMTVDKIVQNNASESVFLFGQILSDLSDLFEKP
FT                 VVSSSLQIFCSDLEVSPAVLIESSDIFCKMVKIDCQDLMLPKSVFFPLIHT
FT                 IRHARQHSKD*"
FT   CDS           join(5754..4660,3822..2740)
FT                 /product="CACTA-1_AA_2p"
FT                 /translation="MSFCIVQTRKTKKSLPSMTVVPANWVEDKWVFWPPNN
FT                 LVSLSKNENSIPDKQMWKKQKCKLAGRAGTFESAEEMMALLEKVTDSEDAA
FT                 QMGHGTRAKPAKKQPKFKSKSYKLVSSYDRNTLVFNNIHYKPQASSTGTEF
FT                 GSAEAGERATLPTTLPENTSSATVSESHSVYPRCPARNCSAPGDKTQLMMI
FT                 APPALPDVPLLKTQSTAQDQQLKTIANRKVVPESQAVGSDACQFSTPTGMP
FT                 INTQFTSPAPMLCTVSSDGAQLQVAVPKPLPYASRPVMAAHHVPVDVVQSH
FT                 HTSKASEFSPVTNAMQRVHNQSMKSTSSTSSMPHTVQTVHQLHVPRNENLV
FT                 YGNTPAVASVYSLSSDSVEENSVSQQISLPVVTGTDGKQYAQLANGYYYAI
FT                 DDNSNEITEEPLSIPIKQDEVDLGDDDCNMVGASSPACDEPDYSPTTIELR
FT                 KINDRLNVFEGKLFDITTEIRKTNERLDVQEGLLVKLTDFMANFNKLMALR
FT                 NKNDVPTIATRQEEDFSEFDKMTKIDSDESFKGFEQCLADPKFSEKFFRYL
FT                 HSIYCLNGKRDSGPLFRTLMRKLLAPNVLIPYSWMGNKRTKKGSTGDPGLN
FT                 INFQATFPNFIKTMHHVLHAADCSTTREQNENLFKNLLRYKMLELKRYENG
FT                 NGERRASSSRKRHKRQKTEDIAEVSVQTENCSNLDESSQMSRDVLQLPPAV
FT                 QSHSSECGTEDETGSDDDRSSDSDD*"
XX
SQ   Sequence 8226 BP; 2627 A; 1487 C; 1528 G; 2584 T; 0 other;
     cccaagtagc acttgtaaca tagctacttt ttaaagtata aaaaaaatgt tgcaagataa        60
     ttacatagcg aataccctga aacaagtcaa gttgcatata ctaggcaaat gtcactagtt       120
     aaaaacattc cgacttttta tgagaataaa ttacaaatat gttacacagt agtgaacgca       180
     agttgtttgt tgaaaagtaa ctgaaatcaa acattttaag ttgcaatgca ttaataaggc       240
     tactatccaa taacatcttt gcaaaatgtt gtgatattgt ggtcactggt gaacttgaat       300
     gtaataaact tgttttgatt taaagttttc caaaatacgg atgtgaaaat ggatcttcca       360
     aacttaatca gtgaaaaaga taagaaaata tggagaaaac tcaagcgtaa tggtaatttt       420
     gctagaacaa aaaaagtgtt aatacaacgc gctaaaaaaa tcgaacccaa taaactactt       480
     aatcatggaa taataaatca tgcacataaa gaatgtatct caaatgtttc ggaagtgccg       540
     gatcaaattg ggtcatcgat ccaatgcagt gaaaatctaa atcctcaaaa ggatgaagta       600
     ttggattccg attctgagcc tgaatctgaa attaacgaca ctaacccaaa ggcagacatg       660
     gaagatcttc gagaggactt gaaaaattgg gcaatcaagt ttcaaatcaa acatacagca       720
     gtaaattctt tgcttagttt gttaaaaagc catatcccag ataacatact ccccaaagat       780
     gcaagaacat tagtaggaac ccctcgtagc tcttgtgtca cttcggatcc aaacattgga       840
     gggcaatact ggcattatgg attgcccaaa atcctcaaac acacgttatc aacgtatggg       900
     gaacttccaa ataaattatc gctgaatgta aatattgatg ggttaccaac gtttaagagc       960
     tcatcaacat cattttggcc aatactcgta aatgttcacg agcttcgaag tacaatgtcc      1020
     cctttggtag ttggtgtttt ttgtggagca agtaatttga cagcgaataa tcttttctta      1080
     tagcgtaatt aaactgcctt tattttacag ctaaacccaa agacgtgaac ggttttctta      1140
     gaccattcat ttctgaattg aattctctta ttgatcatgg actttttatc aatcaaaaat      1200
     tgataaccat agaactacgt tgctttatct gtgatacgcc agctcgctcc atgcttcgag      1260
     gctagtatta gataaatagt gccaagaact aactaatatt ccagattctc ttttctaggt      1320
     gtcatcggtc acaacggtta caattcgtgc ttaaagtgcg taactgaagg tgaatattcg      1380
     tatgccttca aaactatgat attccctgaa atgaacgccg ctctacgaaa cgattcggat      1440
     tttcgctcta gaacatacga agggcaccat aagtttgata gtattctcga ggatattcgt      1500
     gggctagata tgatcaaaga ttttccaatt ggagattcgt tgcatttgat cgatttaggt      1560
     ataatgaaac gactactgaa cgggtggaaa gcgggtactc tcaataacta taatgcaaga      1620
     tggtcagcca aacaaataga gaatatttct tgttttctta aaacatgcaa gttgccacga      1680
     gagtttaaac gaccagtaag aggtttggat catcttcctc gatggaaagg atccgaatta      1740
     agaacctttt tgttatacat aagtgtagtc gttctgaaaa aatttttcga gtctgacgaa      1800
     atactggatc acttcctaaa cttcttttgc gccattcaaa tttgtatgag atacgaccaa      1860
     aacccagaaa attatgaagt ggcacgatgt ttaataatag attttctcaa tggagtgaaa      1920
     accttgtacg gtgaacaact tttctgtagt aacttccata gtttaataca tttaattgac      1980
     gatgtagaaa gatttggacc tctcgacact tttgacgcct atccatttga gtcaagacta      2040
     tacaccttga agcggttgat tcgtactgga aatttgccat tgtcacaagt tgctagaaga      2100
     ataagcgaaa tgcaggaaaa tgtttcacaa ccttctgaac ctaaacagcg ccctattcta      2160
     aaacgaaaac ttagtggaaa taacttctca gaccaacatt tttctcaaat agagaaaaat      2220
     tcagatgtgt attcctttgt cgatttcgga gacttttgta tagatacgca aaaaactgta      2280
     gacaaatgga tcttaacaag aaacatgaaa gtaatgacgg tagataaaat tgtccaaaat      2340
     aatgcatctg aaagtgtatt tttattcggg cagatattga gtgatctcag tgatttgttt      2400
     gagaaaccag ttgtatcttc atctttgcaa attttctgct ccgacctaga agtttctcct      2460
     gcagtgttaa ttgaatcaag cgatatattc tgtaaaatgg tcaaaataga ttgtcaggac      2520
     cttatgttac ctaaatcggt tttcttccct ttgatccata caattagaca cgctaggcaa      2580
     cacagtaagg attgatcaaa ataaaataaa acaatattcc aatcagattt gaaaagaatg      2640
     ataattttat tgctgtacta tttctttaat ccgagccatt tagtattgtt aattggtact      2700
     gctcatgtaa taaaaatcat gtattggaaa tgtgtacgtt taatcatcac tatcggaaga      2760
     acgatcatca tcacttcctg tctcatcttc agttccacac tcactgctat ggctctgaac      2820
     agcgggtggt agctgcaaca cgtctctgga catctgggaa gactcgtcaa gatttgaaca      2880
     attctctgtt tgcacagaaa cttcagcgat atcctcagtt ttctgtcgtt tgtgcctctt      2940
     ccttgaggat gatgctcgac gctcaccatt tccgttttca taccgtttaa gctccaacat      3000
     cttgtacctg agaaggttct taaacaagtt ttcattctgc tcgcgagtag tagagcaatc      3060
     tgctgcgtgt aaaacatgat gcatcgtttt aatgaaattg ggaaaggttg cttgaaagtt      3120
     gatgttcagg ccaggatcac ctgttgatcc tttcttcgtc cttttgtttc ccatccaaga      3180
     ataaggaatc agaacatttg gagccaacag tttccgcatg agtgttcgga acaatggtcc      3240
     actgtctcgt tttccgttca aacagtaaat cgaatgcaaa taacggaaaa acttttcgga      3300
     aaattttgga tcagccaaac attgttcaaa acccttaaac gattcgtcgg aatcgatttt      3360
     tgtcattttg tcgaactcgg aaaaatcctc ttcttggcgc gttgcaattg ttggcacatc      3420
     attcttattt cttaaagcca taagtttatt gaagttggcc atgaaatctg tcagtttcac      3480
     taacagtcct tcctggacgt ccaagcgttc atttgttttc cgaatctcag tagtgatgtc      3540
     gaatagtttc ccctcaaaaa cattgagccg atcatttatt ttccggagct cgatagttgt      3600
     tggcgaataa tcaggttcat cacaggctgg cgatgaggca ccaaccatgt tacaatcgtc      3660
     atctcccaga tcaacctcgt cttgctttat gggaatggac aatggttcct cggtgatttc      3720
     gttgctgtta tcatcgatcg catagtaata tccattagca agttgtgcat actgctttcc      3780
     atcggtaccc gtgacaactg gaagacttat ctgctgagac acctaaaaca ggaaacatca      3840
     aatctcttag tatcaacatc atgaaaccaa tctagatcag tgtttcacca tacttgccat      3900
     gtagcataat ctacgtaagc ctaattgaca atttcagcat ttgaactaca ttactaaacg      3960
     tatggatgca aatactatgt ttaaatatca atagcacatt cgttctatcg ctcatctaga      4020
     ttcctgcgca tgatattccg gtcatataac gataatgtac taaaactaca gtggctctta      4080
     cgtcgattat gcgaacatat gcagcatatc agcataccag cagccactca ttttattaga      4140
     agttttgttt caaaaaatat caagacaccg ttggaagagc acatacccct tttacagctg      4200
     atacacaaat tttaaatttt tcctgcgaaa aacgttacgt agggggcaag gggattcaaa      4260
     ttttaaattt cattgttacg tagtaattag atgctgccta attgaacttc aatataatca      4320
     tccaaattag tggttggaat tgttttttga gaaacactgc tctagaaact ggatcacagt      4380
     gggacgaaac tgaaaataaa cggtcagaac attttagacg ccatatgtgt cttcgggacg      4440
     ttgttttgaa atagcagccc gagtaataat agaaaataat ttgttaatta aactgaacaa      4500
     atcatgcgac caaaaataca ttgttagaaa tatatttttg agcgatcgct acctaacaaa      4560
     attttagttc tactcctcta gaggttttgc ccgtatagtt gcagatacgt cccactgtgt      4620
     ggatgcattt atattagatt tatgatagaa aatgcttacc gaattttcct caacagaatc      4680
     tgacgaaagg ctgtatacgc tcgccactgc tggtgtattt ccgtaaacga ggttttcatt      4740
     tcgaggaaca tgaagttggt gtacagtctg gacagtgtgt ggcatcgagg aagtggagga      4800
     tgtagatttc atactttgat tatgaactct ttgcattgca ttcgttactg gactgaactc      4860
     cgaagccttg ctggtatgat gcgattgtac cacatctact ggaacatgat gagcagccat      4920
     aactggtcgg cttgcatagg gtaatggctt tggaactgca acctgcaact gagctccatc      4980
     agaggaaacg gtacacaaca tcggcgcagg agaagtgaat tgcgtattga tgggcattcc      5040
     ggtaggtgtc gaaaactggc aggcatctga ccctacagct tgggattccg gaacgacctt      5100
     gcgatttgcg attgtcttga gctgttgatc ttgcgcagta gattgcgttt tgagcaatgg      5160
     aacatctggc agggcgggtg gagcaatcat catgagctgg gtcttatcgc caggagctga      5220
     gcaatttctg gcaggacacc tcggatagac agaatgcgat tcggaaactg ttgcggaact      5280
     cgtattttct ggaagggtgg ttggtagagt tgcccgctca cctgcttcag ctgagccgaa      5340
     ttccgttcca gtcgatgatg cctggggttt ataatggatg ttattgaaga cgagggtatt      5400
     gcgatcgtaa ctacttacca atttatagct ctttgatttg aatttaggtt gtttttttgc      5460
     tggtttcgct cttgtaccgt gacccatctg agcggcgtct tcggagtcag tcactttttc      5520
     aagtaaagcc atcatttctt ctgccgattc gaaagttcca gctcgtcctg ctagcttgca      5580
     cttttgcttt ttccacattt gtttatctgg gatggaattt tcgtttttgg aaagactgac      5640
     caggttgttt ggtggccaaa aaacccattt atcctccacc caattggctg gaactacggt      5700
     cattgacggc aacgattttt tggttttacg cgtttggacg atacagaaag acattctgat      5760
     ttattttaat atacgagagg cacgaataaa taaagcaaac cacgaaaaat attaaaaact      5820
     tcgagctcaa agattcgcgc acaaactctg ttctacaatc aaaacaaacg caagaattgg      5880
     tggctgtcaa aactgtagtt acactgcggc aaaacgttaa acgcaaatca gttatttggt      5940
     aacatcattt gtttatttgt gtcgataata caacatagag caatacgaaa tattgcggct      6000
     gtattattta atgtttcaat gttaccgctg atgtataaat acaagtgacg tgtcaactta      6060
     taggaagtaa attatccgtt tcaaatcagt tacagtgtaa tcgtctggat ccattgcgac      6120
     tgtaatgtaa tgtttacatc atgttggaaa tttataacac tgccgattaa atgttttggt      6180
     atgcttggtt ttatttgttg aaataaattt aaatacagtt ttattttatt aaaacacact      6240
     ttctcatttt tctttttcac caaaactgcc tattagtaac gtattgcaaa attatatttc      6300
     gaaaagatat tggcagcttt gctaaggtaa aaaataacca ttatcgctgt cactaagtct      6360
     gattaacagg aataaataaa taataattgg tcattgtaat ttctagatac ctgactagct      6420
     aaatctaaca gaattcaaac ttgacgagtt gtttagttat gaccattttt ttctaacaat      6480
     gtgccgttca cgaattgtgt aatgtatatt ttttgcagac caatggaagt tttgaaaaac      6540
     gtctactggt ccggagtggg tcactaggta agattgagta aaaatgatcg gaacttcctt      6600
     tcctcaacca attggtataa atccaactaa acttgcttca taatttcaac tacgaatact      6660
     agaaatgaaa aagacgatat tggataatta taggtttact attgcgcctc catggaattg      6720
     gtccaagata ggtctaattt tgtttttctt ctaaacgggc aaatatgttt gtaaaatttc      6780
     atcattcaca aaaaaaaaac actcagacct gagggagaaa gagtattatt caaggtcacc      6840
     cagaatcgaa aaataatcta cagttattcc tgatttcgaa gtctccccat tttgtaaaac      6900
     accttgttca caacaaattc actgaacttg tcatctatga ggcaactatc tttgtaatga      6960
     gtccacttgg acttgtctgt gttagatttt gaaaaaattg aagttttaca ccaaaatgtg      7020
     acagtttaaa aaaaaaaatt aaaaaaaaaa acaaaattga actatttggg atcagttaaa      7080
     ggagatccga gcataaatca aaaattgcaa aattgtctaa tttagttctc acaccacatt      7140
     cgtagccaaa actttgaaaa caactagagt tggagtcaga tttatactaa atagtcgatc      7200
     aaatacatat tgacaaaatt ccaatggtcc tcaaatctag acatcggcat gattcctttg      7260
     gagcgtcgaa aattgtcgaa atggtagcgt ttggaacttt ttttttccac ttgctaggca      7320
     gttacgattc aagaaaaaat aacctttttg tttaatatta taacaaagtg caagttttta      7380
     tttccacatg gacacaagtg atgttgctca aatgtgtttt aatttacact tgtattcaat      7440
     aatatttatg ttgctttgag ttaaacgata ttttcgagca ttcatccggc agtgtaaagc      7500
     caacgatatg gcgataaatt cgaggaaaaa aaggttttta atgaataata caatttaatt      7560
     aacatatttt aatggaaaac tggaagaatc aatagaatta taaatgtctc aagttcgttc      7620
     ggtataaaca taatacaaat atcactttac tttcaaaaac gatcgcatac ttttcatatt      7680
     gattctatac ataagctaat aatttgccgc tcaatccgta aatataagga agtttcaaag      7740
     cgcgtgaatt ctttaaaact agaaggctca acatcaccgt aaattttgat tcgcatgttg      7800
     tattttaaat cagaattaca aatttatatc aatatatata gagcgagata atttatctaa      7860
     gatttaagaa aaactctgcc gttcagcgat agttagcatc gtgaactgaa tctgtaacac      7920
     aggaaaaaaa ggaaattatt tcgaaattta gttaaattga aacaaccatt cacttgttga      7980
     gcgtttctca aagatgtgaa agtttatttt ttgttctaca tcactaatgt gtgacaaagg      8040
     aggttatata ttaattacat aaaaacatca attgcaacaa tcaagaagtt gcatttaggc      8100
     tccacctctt gcgcttttta ggttacacag atgtgatggt caatgttgca aaagcccgca      8160
     ttgatattta agatttgttt cataaaaatt gttgtcacta aattgtaact tagtgtgttg      8220
     cttggg                                                                 8226
//
ID   CACTA-2_AA  repbase;    DNA;    INV; 6076 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   16-MAY-2011 (Rel. 16.05, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; CACTA-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6076 BP; 2046 A; 1094 C; 1163 G; 1773 T; 0 other;
     cactgaacca agaaatatca tgaaaagtat taaaaacgtc acatacttct ccgttaatcg        60
     aattcctatt cattttatgt gtacctaata acatccatgt acaaaaccaa taaaaatcgt       120
     tatgaaacct cataatattc atctaccaat cctctggatt gtacatgaac aaaagtcatg       180
     tatgctgtca gataaatgct atgtgatttg ctgatgtgaa aatttagtcg ctttatagca       240
     gttttttcaa gatggcgaat ctggttgacg aacttctggc ggatttagga ttctcggcgg       300
     attcactgca agtatttcaa cgtatgttcc ttaaaattac gtaaaagcat aaaaaaatta       360
     aattgttttt tttttcagtc tgcggtattc gtttttatga gttaattaca tattcagtgg       420
     aagattttga gtctagctta agtcagagcg atataaattg gaattaccac aaagtgttcg       480
     aatacgtaaa tgcctggcgg aaacgaaatg taagttaaat gttttcaaac aaatattaaa       540
     agtaaatcta ttgtcaatgt ttacagaaag cagcgattct caaagtccta gcacctgact       600
     tactggtaaa acaggaaaac gttcagggag gaccggtgca agcggaagac gacggaaaac       660
     aaccggaaca aacaccagac aatccagtgc agtatcaaaa agtggccggc ggtgcggagt       720
     caaacgccaa tccggtgcaa gctaaagacg acggaaaaca gccggaagaa acaccagaca       780
     atccagagca ttatcaagaa gcggccggag gtgcggatac aaacgccaat ccagtggaac       840
     aggtgaaggg aggctccgag acaacaagaa cggttgattc tgatcagcaa gagtccacgc       900
     ccaagacagt ggccgagcca gatgggacat cagcagtaga tgcgggaaca ccaaacaacg       960
     agaaacactc ctattctgag gaggaacatg tttcggaaaa ggccatcacg cttacagctg      1020
     gtctgcttct gtctcttttg aatggcaacg aagagggaaa aagtttgatt gagaaggcaa      1080
     aaatttgtga actatccgat agtaatcagc atgtacttgc cggaaccatc gctcgattcc      1140
     acctgaacca cagacgtaaa ttactcacgg aagatctgga aagttattgg ttggctataa      1200
     aaagtctttt caagtttgag cggaaggtaa gcaacagtaa cgggaattga ggaaaattgt      1260
     aatgtttaca tgttgatttg tttgtaggaa aattacttca tctgcagaag cggccaacga      1320
     cggaaccacg gtggtaagat cgccaacaaa atttctaatc tgaagcaaaa gaaacgtaaa      1380
     acagatctga acgaagaaca acactgcaag caagccaaac taacagcaag gcccgagaca      1440
     tctgctgatc cttcttctgt cgaagccaca gaatggttaa ccttgaacca ggaaccttgg      1500
     tctgttgtac tggagaagtg gaaatccagt ttcccgatta gaagaaaata tcttcaaaat      1560
     cgagattcac tgcctatgct gttgtccaag tactcacact tcaagactgc tcatggattt      1620
     caactagtaa gtaatagctt tatacttaaa tagtttgaaa aataccgtca gatggggctt      1680
     ttccacacta ttgcgacata tttcaacttt acaaatgttg atatttcaaa ctattacaaa      1740
     tgttgatgaa acataacgat tgcatagctt tgtgatatac cttttacata gggtaaactg      1800
     tccatattcg cataacagtc tcacatgcta ttgtatttcc tatctacatg ggactgtcat      1860
     gcgaatatgg gcagaaaaga actacttggg cactttcaag attcactttg gcatgggggt      1920
     attcccaacc gaattgacct gaaactttgc aataagatgc ttattaatgc gatgcatatt      1980
     gtggccaaat atgagttcga taacttcaaa aaaaaaacca ttgccgaagt tattctaaag      2040
     tgccaagaac aggattcggc tccctagcaa atgttttgta gcttgctcag acttttttga      2100
     aaaatattga ctagtgtatc ctgttattgt tgatattatt acaataaatt tgcatgtcgt      2160
     tttgtagagc atagggagcc ggacccaatt cttggcactt ttgattgact tcggcagtgg      2220
     gttttttttt tgaaagctac aaagctcata tttgaccaca atatgcgttg tagtgaagtg      2280
     ctccatattg caaagtgtca gacaattcgg ccgagaaaac ccccccatgc caaagtgaat      2340
     catggaagtg cccaagtggt tctgcaccct atgtgggata ataaaagcgt tgaagacaca      2400
     aaattgctca gattaatatt tatgctgcaa ataaatccaa aatgtggctg ttcaaagtag      2460
     ccacgtctga cggtaatctt atttcaattg tcatttttca tttataattc ttttatcaaa      2520
     aggtggatgt cgacttcaaa ttcctgaata ttggttgctc agatggactg cttaagcttg      2580
     aatcggcagc agttgcaata actacgttca tcgctaaaaa agccaccgat ccctcagctg      2640
     tgaagttgtt gaaatattta accagcagta atgttagcca aggtttgcac atcaaaaaag      2700
     aaacactagc aattcattta actctcatat tttatgtttc tagataccaa gctgtgcgca      2760
     ctgctacttg gattgaatac ggtgcttcca ccaatcgtcg ctagtgcaaa gttcaaacca      2820
     accatttgtg tggctcaaga ggatacggtt gtatttgtcg attcatgcga gcaaatcgtt      2880
     gagaaagttc aatcgattta cgcgtcgtat gttgatcgaa agctacctat ttcaccaaaa      2940
     ctagtcgccg taggaacagg tccggaaaac ttaaccggcc gttactatgt gagttacacg      3000
     gacttgtgct atgagtttac atcatttgca agggcaatcg acgtgctggt caaactcaca      3060
     catctgttcg gtttacccta ctcgaagata tccaagcttg tttggcattt catcagcaac      3120
     tctatctatg gcattgagca acgtgagtcg tacgcaagtg taaatcgtct ccacaatttc      3180
     ctgactcaag cggaaggtcc tttaacagtg aatcatgatg aactgcatgt ttgaacactg      3240
     taagtctgat tttgagagcg ctgtcgtata tctcgatcat ctgaaaaacc atcatagagt      3300
     tccagtaaac taccgctata gatgcaccgt accaaccatt cctgtatgca accaaatttt      3360
     ttctaaacta tatccgttca agaagcacat tatcggacac agcagctcag aaagcgttca      3420
     cagaacgaat gtcccgcaaa gtaatacaac agatttggat gatcgaactg tggctgagag      3480
     tatagatcac aatacaaaac ggcagagaat cagcatggaa ctcagtagcg agagcgaagg      3540
     gggattttcc gacaaaatga atgaaatcga gagatcagct acagcattta ctcttagttt      3600
     acatgttaaa atgaatgtta gcaggaaaga tgtatatgat attcaaagag gaatagattc      3660
     aatgttcaca gagatagcta atcagttaca agatcttcaa atgatagcac ctaatccaga      3720
     tttgtttttt tgttatgaaa gctacatctc aaaaatgaaa aacattttca aatccgttag      3780
     ctccgatcat aaactgttca atcacttgaa gcaaaagcaa gggttgcaat tgccatccat      3840
     aatatgtatt gataagactg aagatctttt gaaaagagaa atatgtattg aagaagaaaa      3900
     agaaatcgaa aacaacaaaa gttatatgat aatgatgccg aatgaatttc aaatttcaac      3960
     ttttctggaa tcaaataata cattggacac aatattggac cacactacaa aacttcaaga      4020
     atcagacagc tttttgaatt tcgtgaatgg ctccaaatgg aaacaaattt gtcaaaagta      4080
     tgaaggggac attattgttc cagtttggct gtattctgac gaattcgaga taaacgactc      4140
     gcaaagttca cattctaaca gacactcgat ttgtggtatc tactataatt tcccaaccgt      4200
     acctgaccag ttccgctcga agctttctca tatatttgtg gcaggaatga tcaaaaaagt      4260
     ggatatgaaa gttactggca tcaataagct attagctgta atgattgaca aattcaagtc      4320
     tatggaagaa aatggaatca aattgaacgt taaaggaaag tctgtaaatg tacgaattat      4380
     tctgtgcttg ctgcagggag ataacttggg gttgcataca atgttgcaat tttccagtgg      4440
     tttcaacgcc acgttttact gtcgtttctg tcggagacca aaggacttgc ttcaagttga      4500
     tgtcaaggaa catgcagatt gcatgcgcag aaaacatgat tacgacgaag acttagaact      4560
     gaataaccag agtgaaacag gtatagcagg taattcaatt tttaacgact taccatcatt      4620
     ccatgtaacg gaaaatagaa gtgtagatgc aatgcatgat ctttttagcg gtgggatatg      4680
     caagtatgga ttggtagaaa ttttggatta ttgcattcac gaaaaacatt ttttcactgt      4740
     tcaacaattc aaccaccaaa gaaaaatatt tagtaaacat tgctctgata gcgagctaca      4800
     aaggatgccc gatataacta gtagttacaa tagcaaagag aaaaaaaggt cagtttcgtt      4860
     taaagtaaca tccagtgaga tgcgattatt aattcattac tttcctttga ttgttggctg      4920
     ctttgtacca aggggagatg aaatttggaa ttattgcaaa gcattaatta agctagttga      4980
     tatgtgtctc aaacgatctt ttaccgaagc agaaatagac aatcttaaag aagctatagc      5040
     aatacaccat gaaatgtaca aacggttgtt caacaaggac ttgaaaccta agcatcattt      5100
     tgtcgtgcat tacccaagtt tgattcgaag ttctggacca atagaaaaga tgatgtgttt      5160
     cagaaacgaa gcaatgcaca aaaattttaa gcaatatgca catattatgt cgtctcgcaa      5220
     aaatatatgt tatactttat gtgtgaaagc ttctttgcaa tttgcctatc atttgcttaa      5280
     tggtattttt atgaaggatg aagtttatgg agatttcttt gtcagtgata ttcgactaat      5340
     tagctactat gataatattt gtaaacctat ggtcgttaaa aatacttttg atgttgccat      5400
     ctcaaacaaa atagtttaca aaggtacaac ttacagaagc ggaaattttt taactttgtt      5460
     tgtcagtaat attttatgtt tgttccaaat actagacatt atgcaggaaa atgaacaata      5520
     ttattttctt gctagaatgt ggaaatctgg aatttttgac gaccattaca tggcatatgt      5580
     agcatacgaa gctttacctc tagttgaaat aataccaatc aatgcattca gtagtccacc      5640
     aattacggta catagaatag aagaacattt atattttcgt ttaaagcata attttaattc      5700
     gattgaatgt aattagcttt taaggattaa tacagattat ttgttcaata aaggatttta      5760
     attacaatta ttgtttcatt caattttact aaagcaaacc ccatatctaa actcacctaa      5820
     aatctatcat aatcttatat aaaaatcatt aaaaaatcaa ttgtttatca cctgagtatc      5880
     acatacaatt catcgacaaa gttttatgat tcatatatgt ttttcacatc aaatgtacat      5940
     gctttaactg atgattttaa tcaaaatcaa ctcgccaaag tctatgtgat attatgatga      6000
     acgttatgtg aaaaactaca tggaaaaaaa ctatgtatga tttcagataa atcttacatg      6060
     attcctctgt tcagtg                                                      6076
//
ID   CACTA-3_AA  repbase;    DNA;    INV; 8786 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   19-JAN-2021 (Rel. 26.01, Last updated, Version 4)
XX
DE   DNA transposon: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; CACTA-3_AA.
XX
NM   CACTA-3_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
RN   [2]
RP   1-8786
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
CC   The sequence 5835-5969 is an insertion of SINE2.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..2958
FT                 /product="CACTA-3_AA_1p"
FT                 /translation="MSSLTCFFCREAVVGYVEEFQRHINGHIRNKHFVSDG
FT                 VFYDCMVPKCRSRYDHFKSLKRHIIQQHPVQFLNNSDSKIEEVSEPVDDSS
FT                 IPHDHPAQPEECIEVGPNDSTSLEQIKKTISLGICRLTSDVSLPQSKIAEM
FT                 IKICETLVQMLGEYFQEQTKAFLEDCAINLDSPETISFLNQFHLSNLFSDV
FT                 STLSKQTNFLKTLAVSIPDPSEKMLQTREDIRHIDGIPKKVKVNETYMYIP
FT                 IIDTLKLIFRAPETRDLLNDAEQEQSPVKEYSSFRTGETYKNSKYFCEFPN
FT                 AIRLSLYQDDVELGNPLSSRAGINKVSVFDFKIQNFPSKWNSSPKTVYPLM
FT                 YCTSIDAKKHGYNKILKPLISDLKKLEKGVTVFYGNEEYTIRAVVTIFCGD
FT                 TLAVHEIFGLLGPMANYFCRICTIQRPAFHQDPFESFPLRTKAWYEHNLDQ
FT                 VESGAISSSECGLKRGGCALNQLNNFHITENFALDAMHDIAEGLVPLTIQL
FT                 VLSYYYKKKELGMTIEFINQRIHCFAYGYVDKKNRPCANFTHEMLSKPAVH
FT                 KLKQTAAQNLLLLRAFPFLFGHKVLVDCDYMKMIGHLINITRVLMSTIVSE
FT                 QMLAALEEHVRLYECLFYEKFKRRINKNHHLDHYVLCIKKSGNMKQFNCLV
FT                 FEQKNKPTKNQSSTCRNFKNICKSLAQRQCFKMIVDVLDNPFQDKTCYNGG
FT                 KIVLREHARSKFFLDEALIHVFIPKSVSINGIDFRPNLIVCIRNYDNDYYP
FT                 SYGIITEIVVINSKVHFLLKLCSTTAYNNFLEAYEVSVKSEEQFFPFHQIH
FT                 SHTTFAFWTIHGSSSKFVSRRNYCQDY"
XX
SQ   Sequence 8786 BP; 2846 A; 1647 C; 1585 G; 2708 T; 0 other;
     cacacttaaa aactaatcgc gagctcggca gaattcatta ctgaactacc acggcaattg        60
     gatattttac tgagaattca gaaaaaatac aatttttacc gactcttggt ttaacttcca       120
     actgaaattt cggtacgttt taaacttttc ctgaattacg gcaacactga atgccgaacg       180
     ccaccgtaaa catcactttc tccgacgtca gttaaaaatc ctgccgaaat ctcggttttc       240
     aaagattttt tgccgaaaca cggtatttcg aatgtcatcc gccattattg ttgtcattga       300
     acgcgagtta actccggcat ccgggaacga aggaaagttt aatttttaaa gtgaaattac       360
     aagtgttaaa catggagcaa atgttggaaa tcatcgaaaa ggaagacgta agattgtatg       420
     atatcttcag taagtatcgt tgtaaaacaa aatatttcat tgtagtaaat aatgtcaagt       480
     ttgacctgct tcttctgccg tgaagcagtt gtgggttatg tcgaggagtt tcagcggcat       540
     ataaatggcc acatcagaaa caaacatttt gtttcggatg gtgtatttta tgactgtatg       600
     gttccgaaat gtagatccag atacgatcat ttcaaatctc ttaagaggca cataattcag       660
     cagcatccag ttcagtttct caacaattca gatagcaaga tagaagaagt ttcagaacct       720
     gttgacgatt catcgatccc tcatgaccat cccgcccaac cggaagaatg tatcgaagtt       780
     ggtccaaacg attccacctc tttggaacag attaaaaaga ctatctccct tggaatttgc       840
     cggttgactt cagatgtctc attgccgcaa tcgaaaattg cggaaatgat caaaatttgt       900
     gaaacgttgg ttcaaatgct tggagagtat tttcaggaac aaacaaaggc gtttttggaa       960
     gattgcgcca taaatttaga ttctccagaa acaatctcgt ttctgaatca gtttcatttg      1020
     tccaatttgt tttctgatgt ttctacgtta tcgaagcaaa ccaatttttt gaaaacattg      1080
     gccgtaagca ttcctgatcc atctgagaaa atgcttcaaa cccgagaaga catccggcat      1140
     atcgatggaa ttccgaaaaa agtgaaggtt aacgaaactt atatgtacat accgattatt      1200
     gacacattaa agctaatctt tagagccccc gaaacaagag atctgttaaa tgatgctgaa      1260
     caagaacaat cgcctgttaa agaatattca agctttcgga ccggagaaac gtataaaaat      1320
     agtaaatatt tttgtgaatt tcctaatgca atacgtttga gtctttatca agacgatgtg      1380
     gagttaggaa atccattaag ctctagggct ggaataaata aagtgtcggt cttcgacttc      1440
     aaaattcaaa atttcccaag taaatggaat agctccccca aaacagttta ccctcttatg      1500
     tattgtacgt cgatcgatgc caaaaagcat ggatataaca aaattctgaa gcctctcata      1560
     agcgacctca aaaaacttga aaaaggtgtc acggtattct acggaaacga agaatacact      1620
     attcgggcgg ttgtaaccat attttgtggt gatacgttag cagtacatga gatttttgga      1680
     ctccttggac ccatggctaa ctacttctgt agaatttgta ctatccaaag accggctttt      1740
     catcaggacc cgttcgaaag cttcccacta cgaacaaaag catggtatga gcataatttg      1800
     gatcaagtag aatctggtgc aataagttct tccgaatgcg gtttgaagcg tggtggatgc      1860
     gccttaaacc agttgaataa ctttcacatt actgaaaatt ttgcacttga cgccatgcac      1920
     gatattgcag aaggactggt acctcttact attcagttag tgctaagtta ctattacaag      1980
     aaaaaagaat tgggcatgac tatagagttc atcaaccaac gcatacactg ttttgcatat      2040
     ggctatgtgg ataaaaaaaa tcgaccatgt gcgaatttca cccatgaaat gctttctaag      2100
     ccagcagtgc ataaattaaa gcaaacagct gcacagaatc tgttgttgct cagagcgttt      2160
     ccttttctat tcgggcataa agttttggtt gattgcgatt atatgaagat gattggtcat      2220
     ttgatcaata taacacgagt attaatgtcc actatagtct cggagcaaat gctggcagca      2280
     ctagaagagc acgttagact atacgaatgc ttgttttacg aaaaattcaa aaggcgaatt      2340
     aacaaaaacc accatcttga ccactacgta ctatgcatca aaaagagcgg aaacatgaag      2400
     cagttcaact gtctggtgtt tgaacaaaag aataaaccaa cgaaaaatca atcatcgact      2460
     tgccgaaact tcaaaaacat ctgtaaaagt cttgctcaac gccaatgctt taaaatgatt      2520
     gtagatgtac tcgacaatcc cttccaagat aaaacatgtt ataatggcgg taaaatagtg      2580
     cttcgagaac atgcgcgaag taaatttttt ttggacgaag ccttaattca cgtttttata      2640
     cctaaatcgg tatctatcaa cggtatcgac tttcggccaa atctgatagt ttgtattcgt      2700
     aactacgaca atgactacta tccttcatat ggaattatca cagaaattgt tgtgataaat      2760
     agcaaagttc actttttgct gaagttatgc agtacgacag catataacaa ctttctggag      2820
     gcatacgaag tttcggtaaa atcagaagaa cagttttttc cttttcatca aattcattcc      2880
     catacgacat ttgctttctg gacaattcac ggaagtagtt ccaaatttgt ttccagaaga      2940
     aactattgtc aagattactg aatgtgagtt atattatttc aagctttaat ttaagacaat      3000
     cgttctaata aaatatattt cacagttcga gaagagataa cagacgtcga aacattctct      3060
     atgctggaca acaacgactt cacaagactc aatctaacaa cgaaaatgat aaaaaccatc      3120
     cagaagttcc aaaaacttgt cgaaaacgat ttagtagttg aagagttgga cgagcaagtc      3180
     gaggaagaga tgaccatcga acacaagatt gagccaccca ccgaaaacaa gcttcctatt      3240
     tctttggaaa aggtgtgtat ttattttgtt catgtaagtc ataattttca atcgctcata      3300
     ttattcaaat atgtgactgg tcaggatatg catcgttttc tccctgggcg gcatgatata      3360
     attaaaaact tactttatta cttgttatag gagatcgacg ttgccctcat attctcacag      3420
     acacaaaatg ggcgagagat acacgaaatg ttggctgcag gcaacaggcc cagtgataaa      3480
     attatcacaa gcattacgca tattgcatgc gactatctca agtctaccta cggagtgtaa      3540
     gtatcataag taaaattcat ttaacgggtt gaccaaattt tacttaccat tttaggaggc      3600
     catccaccta ctacaaagaa acacttgccc ggtccttgat caaaacttat cccgtattgg      3660
     cgtcaactgc atcggatatt cctcacgtaa gtaataaacc gttattttta tgcgaacgtt      3720
     cctaacgaac cgattgaatc aaactctggc atgatcactt ctggcacaag cttttctgca      3780
     caccaagcat acatagactg gtgaaccatt actttcattc gttaatggta acgattaaaa      3840
     gatcaaaatg atgttttacc ataggtactt atcaattttg atattaatga aaaataaatt      3900
     cactatacat atttgaacta gtctgccgct attctttata aacaaataga ttttcaattt      3960
     taccacccac cacccaatgt tctggattca cttaggtggc tcagatgatt gttgcgtgcc      4020
     actagttctc tctttgattc tcccgttgtt cttatgcaga gcaaatactg acgtcactat      4080
     ttgctttgca taagaacagc gggagaatga aatatagaac tagtggccca caacaatcat      4140
     ctgcaccacc tgagtaaaac cagaaccttg cccaccaccc acttaacatc gaagcgagca      4200
     agcaaaccgc agtcgggaga tctgtcattc tgtctgtagt ttcgagatta acttttcaat      4260
     ttgtcccaaa tatgttaagc atttacggaa ccatcgattc ggagctcatt ttgaccaagt      4320
     actaaaaata ctataaaata cggttttaat caattttgcc acgatgcaaa atttttaaat      4380
     caattggttt gctacaaaag tgaatatttt gtttgaattt taaaatgatc ttcggcattc      4440
     ttgtttatgt aaattgagtc taaccaagaa atcaaatttg tgctaagaat attaccagaa      4500
     atcaaaatct gcaaaaatct tttatgaaac ttaaaaggtt tttgtgaagc atctgtgaag      4560
     tgaaatatgc aaatatccaa ggattcgtca aggaatccga cattcttctg gaattcattt      4620
     tgctaaacct ctttattttc aactatatat atttttagat tcctgaaaat tttaaaaaat      4680
     acaaagaatt tctctccgcg ccttgttaaa aaccctcgta agaggaaatt gaaaaatgtc      4740
     aaataacaaa aagtcttatt tagtggattc caatcgatta catatgctag aacaagggat      4800
     aaacaagcac ttacaaaaaa aaaacttaaa taaaattgca cgctagtcaa ccataatttg      4860
     aaccgaaata tctgagtcat tcttgagcca agctccctta gtaggttttt tttttcaaac      4920
     agtaaattat ttgtttgttt agcaaattga aataatctta acggtagcgt gcaaaaattt      4980
     tggtgaatat tgttaaacaa ccattctcaa atgttcgtct atattgattt gttaaccatt      5040
     aatggcaaat aatattattg tgaatatttc tcgataactt tttcaaatca acgtacgcaa      5100
     cttttgtact gttttgagaa aatttattga gaagaattaa aaagaattaa actgtaccct      5160
     tttgaccatt ttttcgtctt attgctcaaa ttgcatgcaa tcagttcgcg ttcaatgttc      5220
     aattagggac tttctattat tttcccataa aaacttgaag ttttattcaa ttatttgcgt      5280
     cgtttttgta ccatcgactc aagttgtgtt ttaattttat tcgtgcttag aaatggtaca      5340
     caaattatgt caagcagaat ttggaactat tggacccccc cccccccttt ggtcacgttt      5400
     tctgaatgta acatcaaaac attttgtaag acttgtcacg ctgtgtgacc cctcccctct      5460
     attggagcgt gacattattt gggtatgacc ccttacgtcg tttgtctctt gaaataacgg      5520
     agcggtgtaa ttagtggtta ggtttttaaa ttttgtctcc tgaatacgat caactgataa      5580
     tttacttttc gggaataagt ctgtttgaat actttttcga gatttaaatt tatttcaaaa      5640
     tgatttgctt ccgtaaatag ttttatagtg tgttagttac tttaagaagt aagtggtttg      5700
     attgacgatt tgacactaaa atatagttgt ttgcattgca tggttaagaa agtgtggctt      5760
     gaataaaatt cgtgcatatt ggtcaattac gagtacagta ttccctgttt cggttgtttg      5820
     ataagttaat tactcccagt tggtcgggta tcaatccccg tcgacgcagt ggggacgtct      5880
     accttggaag gggaataagc ccttagttcc atcagcacat gatgggttcg gtatgcaggg      5940
     tccccgatgt gtttggaggt ctccctgggt gtctctgttt agccttaata ccagaaatag      6000
     ccggacataa aacaacaaca ctgatgttaa aaagcgtatc gattgatcag aaaaaaggag      6060
     atcgattagg gtaagtgttc ccttagttgt ggctgttcct atagttgcgg tagtgccgtt      6120
     ttcactgatt ttattgcatt agccactgaa ccgacactgc caatcgacgg acgtattggc      6180
     ttattgatac acggaatagt taaaaagagc gttcaatttg ctttaaaact gatgaaatat      6240
     cactaaattt gctaaaactg ttcttgcttg taccaatagt tgcggtaaag tgttcctata      6300
     gtggaggatc ccataagaaa acaacggata ccgcaactat aggaacacaa attaaaaatt      6360
     taccgcaact aaaggaacag tataccaata gtggaggtat tatttttcac tgacatgccg      6420
     tggattacta cgatgaaatc ttttttctca ttaagtcaat ggtcgttact tcccgttaca      6480
     acatcaacat gtgcattaat tgcgcttctt gaattaaggc ggttaaatga agttcaatcg      6540
     tgcttagtac ctccactatt ggtacatcta ccctaattca tgatggggca tctgtaccag      6600
     tgatagaagc aatagtaacg ggttgaggaa taaggaagga atcgcgaaaa aaatgaaagc      6660
     tcaatttcca tatttgaata cgtcattcaa aagctttcct attctatttc acatgaaaaa      6720
     ataatctttg aatcataaaa tcagtatttt tcagaaaaat acttccttca tcactggaac      6780
     atgatccagt aataatgttt tttttaggta cagaagccta taatagtggt ttacattgat      6840
     ttctcattaa gactcactat tgtaggaacg caccactatt attgatgcaa agaagcgtgt      6900
     tttctgctat ttccttatat tttcacacaa tcatttaatt ttgaccagta aaatacacaa      6960
     aaatataaaa gttgcctata acgcgatata aaccgcatta ccactattag tggacacaca      7020
     caaccactgg atcagccatt ctaataatgt ttattattcc aggcactgtg gtttcacaag      7080
     aacggacgtg gcgatgggcg tcatgctggt aaaattcatt acaggatgga aagcctagca      7140
     aaacaatcag acagccgcgt atttcttcgg cagcgtgatg ccgaacaagt accacagaca      7200
     tctggaacaa cagtagtcga caaagaagaa cccaacattg atgagctggt aaaatagtga      7260
     tatttattat tccaacaatt gcttcataaa acgatttctg atttcaggtt gacgaactac      7320
     gatgtattgt cccaacgcac caagaaaaag gaaaaattga agaattgtgg aagaaaacga      7380
     ttattcaacg aaacaaagca cgagacgaag gatttttttt gcagtacttg aaggatttcc      7440
     ccgttgcgtt ggcattcgac ggtcaattgg ttggttaaat atcagttttt ttttggtagt      7500
     ttataacgag cttgtttttt atttcagatt tctcttgact tccaattgct gaagccgaat      7560
     gctcaatgtt ttgatgatgc atggaattct attctaccaa aaatactgga ccaataccga      7620
     gatgtacaca tgtacatgaa aaatgatgtc atcaaagcat tgaccgttat tcgtgacaaa      7680
     aacccgagca gaggagcgaa acgtccgcga gaggaaaccc aagcacgtaa acttaatcca      7740
     cttcgtggtg tcatcgagtg gattgatgta agtagtacac aagatcgatt atgtcattca      7800
     aatgaaaatt tcaaaaatat gtctgaaact acacattaaa acaaaaaagt cacagaatca      7860
     ctaaagttta tgcattgatg actattttct atctatctct ttcattctgc tgttaatttt      7920
     tacactagct gccattttga ctgacttcaa gcttagcaat gatttaaccc aagggaactg      7980
     ataaatagct taaaaatctc tgcacttcac tctgcagtga ggcaaataga aaatagcaaa      8040
     aatactataa attagtaact ctgtgactac ctttccttct gagtaaaagc agacgaaatt      8100
     cataactaat gagaataatt ttttttacat ttcagccgga gttcgaaatg ccctcaacag      8160
     aaattcctat gattttcatc gccgaaaagt tattcgagat cggggactgt tgtgtggcct      8220
     ggaaagatat tacgattccc gtaggaaatg acgtcttggc ggccttcaag ctcctttgtc      8280
     aagctttcgt ggttttcaat gtgaaatgca gcccatccga taaaatattt tattcctttt      8340
     ttcatgcatt ttgcttcaaa gtagaaccgc tgagtaccac gagcaacaag tttgtggata      8400
     aactgaactg aacaacaaca tgttgaactt ttcctaacaa ctaaggaaac ctaaacggtt      8460
     agcagagaaa taaaataaat gccctgattg attacactat gtttcatttg tttatttgta      8520
     tttatcactg gcttatcgtt atttaaacaa cagttggctc cattttacag ctgaaaatcc      8580
     tgtgctatta ttatctgatt gtttttattt tttgctgaga ttccagttct tgtcaaaccg      8640
     aaaatctcag taaaatacag cagctgtcat ttttgttgaa accgagaatg tcagttgtta      8700
     acaatctgcc gaaatcgcaa ccgagcactc ggctgtgcga ttctcggcaa aattaaaccg      8760
     agattcagcg aaaaaattta agtgtg                                           8786
//
ID   CATS        repbase;    DNA;    INV; 5117 BP.
XX
AC   .
XX
DT   11-SEP-2012 (Rel. 20.10, Created)
DT   11-SEP-2012 (Rel. 20.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon CATS.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS; CATS.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RA   Sakudoh T., Tsuchida K. and Kataoka H.;
RT   "BmStart1, a novel carotenoid-binding protein isoform from Bombyx
RT   mori, is orthologous to MLN64, a mammalian cholesterol
RT   transporter.";
RL   Biochem Biophys Res Commun 336(4), 1125-1135 (2005).
XX
RN   [3]
RP   1-5117
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (11-SEP-2012).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to consensus. It is similar to the TRAS family of
CC   non-LTR retrotransposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..985
FT                 /product="CATS_1p"
FT                 /translation="RYPCKWHTRALSEQLEKTPLYAAGHGSLDEHSQLLKE
FT                 NKEEIEKLSEEIKKQRTEWKENRSYASVVSGTKEKERGNAEMHSVVISSDD
FT                 QNATGEDVFNKIRSTLNAKEEGIKIDRIRKVKDRKVIVGCESKEELVKIRE
FT                 TIKTKGKDLHLQEIRNKEPMVQLKDVLNYNKDEDIVRALINQNKHLLGDVS
FT                 VDSSTLKVKFRRRARNPLTSHVAIQVPPKLWKRLTEAGLVHIDVQRVRVED
FT                 QSPLIQCSRCLGYGHGKRFCREKIDACSHCGEAHHRSECADWMARVPPSCC
FT                 NCLKAKIGEAEHNAFSPECPVRKRWETLARSTVTYC"
FT   CDS           978..4700
FT                 /product="CATS_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="LIAKVDSRNPDQIIPPRGTVSTLVAQSNLQRKHLATS
FT                 EFLLEAKKRRVDVALLQEPYVGSQGRVRDHRGVRIFQGINGQGAVIKSAIA
FT                 VFNDGWVVTPCPSLTTTNITVVKIYTGIRNLVVVSFYFEPDKPIGPHLEQL
FT                 GKVVETLGSRGILIGGDTNAKSVWWGSVGTDARGEEVLGMLGEWGLQLLND
FT                 GQTPTFETVRGGKLLTSHIDITACSEDIIGLISDWKVDDTMASSDHNAITF
FT                 VIKKSKDKYTQAKSKTTRKYNTNKANWTYFNEKLEELIENNNLTNTEIRNI
FT                 KEKTKLDEVINKYTEVVTEASNSAIPLIKIKNSMNLPWWSEKLAKMKQGVA
FT                 TRRRRIRCAAPVRRAKVVREYLESKELYENEAKKAQIDSWKEFCKKQTKET
FT                 IWNGVYRMIGKVSVKKEDLPLIYRGQTLSEEESAKHLAENFYPEDKSEEDN
FT                 AEHQAIRKAADRINGGQDDDYQDPPFTVHEVLTAAESFNPKKAPGADGLTA
FT                 DICKQAIQKNPKLYLSLANRCLQLGHFPTIWKEATVVVLRKPGKEDYTDVK
FT                 SYRPIGLLPVMGKILEKMVVGRVKWYLLPRMSTRQFGFMPQRGTEDSLYTL
FT                 VNYIRDRLKEKTIVTAISLDIEGAFDSAWWPAIRVRLSEEECPKNLRRMVD
FT                 SYFESRTVRVRFAGREHLKGTTKGCVQGSIGGPIFWNLLLDPLLRELDRRG
FT                 VYCQAFADDIILVFDGETANIQRRANEVLSYVRDWGVRNKLKFAPHKTKAM
FT                 VITRRLKYDSPILHMGGVDIDLTNELKVLGLIIDNKLTFNRHVAEISKKAI
FT                 GFYRRLSRAARAAKIHWGLNPEILRTLYNAVVEPIMLYAASAWAPATRKKC
FT                 VRRRLNSVQRGFVQRMTKAYRTVSLNSTLLLAGVLPLDIRVREAAMLYETK
FT                 RGHSQAVVGDRGMERPVAFANLDHPARRKRWEYRSLTDGAELESHIRECPS
FT                 IFTDGSKIEGRVGAALSIWEGTGEIKTKKLKLGSYCTVYQAELLALLKATE
FT                 EVLSGGAATYNIFCDARSTLDVIASGESLHPLAFKITKNLKTITERNQEIR
FT                 LFWIKAHIGLEGNERADVLAKEAALSLKCKPHYDRCPVSFAKRTIRQGSVD
FT                 EWDLRYTTESTASVTKIFFPNVKSSYSIIRRLEVDSTLTQVFTGHGGLSQY
FT                 LHRFRCKESPACVCDPVNQESIVHVLIECPVHAKERFDTEQHIDLNIEVRN
FT                 LPLILADKKNRSKFIEYCKKVIRIVINRNKQ"
XX
SQ   Sequence 5117 BP; 1727 A; 1013 C; 1333 G; 1044 T; 0 other;
     tcggtaccca tgcaaatggc atactcgagc tctgtcggaa cagctggaga aaacccctct        60
     ctacgccgca ggacatgggt cattagatga acacagccaa ctcttaaagg aaaacaaaga       120
     agaaatagaa aaactaagtg aagaaataaa aaagcaaagg acagaatgga aagaaaatag       180
     gagctacgca agcgttgtca gtggcacaaa ggagaaagaa cgcggaaatg cggagatgca       240
     ttccgtcgtg atctcctcag acgaccagaa tgccacaggg gaagacgtat ttaataagat       300
     caggtcaacc ctcaacgcta aagaggaagg gataaaaata gacaggataa gaaaggtgaa       360
     agatagaaaa gttatagtcg gctgtgaatc gaaagaagaa ttagtaaaaa taagagaaac       420
     aattaaaaca aagggaaagg acttacacct ccaggagata agaaataagg aacccatggt       480
     acaattgaag gatgtcctga attataataa ggatgaagat atagtgcgag cactaattaa       540
     ccagaacaaa catcttctgg gggatgtgag tgtggacagc tcaactctga aggtaaagtt       600
     cagaagaaga gctagaaacc cgctcacatc ccatgtggca atacaagtgc caccaaaact       660
     atggaagcgg ctcacggagg cggggctagt ccatatagat gtgcaaaggg ttagggtaga       720
     ggatcagtct cccctgattc agtgctcgcg atgcttggga tatggccacg ggaagcggtt       780
     ctgccgggaa aaaattgacg cctgcagtca ctgcggagag gcgcatcata ggtcggaatg       840
     cgctgactgg atggcgaggg tgcctccgtc gtgctgtaac tgcttgaagg ctaaaatcgg       900
     tgaagccgag cataatgcct ttagcccaga gtgtccagta aggaagaggt gggaaacctt       960
     ggcaagatct accgtgactt attgctaagg tggactccag gaacccagat cagatcatcc      1020
     ccccaagagg cactgtgtcg accctcgttg cacaatccaa tctacagcgc aaacatctag      1080
     cgactagtga atttcttttg gaagcaaaga agaggagggt tgacgtagcg ttgctccagg      1140
     agccgtatgt gggaagccag ggtagagtga gggaccatcg gggtgtgagg atcttccagg      1200
     ggatcaacgg gcagggggct gttatcaagt cagccattgc tgtgttcaat gacggttggg      1260
     tagtgactcc ttgtccatcc ctaaccacga ccaacatcac agtggtgaag atctacactg      1320
     gaatacgcaa tttagtggtc gtatcgttct actttgagcc ggataagccc attgggccac      1380
     acttagagca gctggggaaa gtggttgaaa cactgggatc tcgcggaatc cttatagggg      1440
     gcgacaccaa tgcgaaaagc gtgtggtggg gcagtgtagg caccgacgcc aggggagagg      1500
     aagtgttagg catgctagga gaatggggat tgcagttgct caacgatggc caaactccaa      1560
     cattcgagac agttagggga ggtaagctcc tcaccagtca catcgacata acagcctgct      1620
     cggaggatat cattggtctg ataagcgact ggaaggtgga tgacaccatg gcgagctcgg      1680
     atcacaacgc aataacgttc gtaattaaga aaagcaaaga taagtataca caagcaaaat      1740
     caaaaacaac taggaaatat aatacaaata aagctaactg gacatatttt aacgaaaaac      1800
     ttgaagaatt aatagaaaat aataatctaa caaacacaga aataagaaat atcaaggaaa      1860
     aaacaaagct agacgaagta ataaataaat atacagaagt agtcacagag gctagtaata      1920
     gtgccatacc attaataaag attaaaaaca gcatgaactt accgtggtgg tccgagaaac      1980
     ttgccaaaat gaagcaggga gtcgctacca gaaggagaag aatccgatgt gcagcgccag      2040
     tacgaagagc caaggtcgtc cgggagtacc tggaatcaaa agaattatat gagaatgaag      2100
     cgaagaaagc acagatagac agctggaagg agttctgtaa gaagcagacc aaagaaacca      2160
     tctggaacgg cgtctacaga atgataggaa aagtgtcagt gaagaaggaa gacctgccac      2220
     taatctaccg aggacaaacc ctaagtgagg aggagtcagc gaagcacctg gcagaaaact      2280
     tttatccaga agacaagtca gaagaagaca acgcagaaca tcaagcaatt aggaaagcag      2340
     ccgaccgtat aaatggagga caggatgatg actatcagga tccaccattc acagtacatg      2400
     aagttttaac ggcggcagaa agctttaatc caaagaaagc ccctggagcg gatggtttga      2460
     ctgctgacat ctgcaagcaa gcgatccaga aaaatccgaa gctgtacctg tcactggcaa      2520
     acagatgtct tcaactcggc cacttcccga ccatctggaa ggaagccacg gtcgtggtcc      2580
     tccggaagcc cgggaaagaa gactacacag acgtaaaatc atatagaccg ataggcttat      2640
     tgccggtgat ggggaagatt ctggagaaaa tggtcgtggg gagagtgaag tggtatctgc      2700
     tccctaggat gagtacccga cagtttggtt ttatgccaca gaggggcacc gaggactccc      2760
     tctataccct tgtaaattac atccgagatc gtttgaaaga gaagactatt gtcacagcca      2820
     tctccttgga tatagagggg gccttcgata gcgcatggtg gccagctatc agggtcagac      2880
     tgtcggagga agaatgcccg aaaaacctca gacggatggt agatagctac ttcgagagtc      2940
     gcacagttag ggttcgcttc gccgggagag agcacttgaa agggactacc aaaggatgtg      3000
     tacaaggatc cattggaggt cccatctttt ggaacctgct cctcgaccca ctactcaggg      3060
     agcttgaccg caggggtgtc tactgccagg cctttgccga cgacatcatc ctggtcttcg      3120
     atggagaaac agcgaacatt cagcgtagag caaatgaagt cctctcctat gtgcgggact      3180
     ggggagtaag aaataaattg aaattcgcac ctcataaaac caaagcgatg gtcataacac      3240
     ggagactgaa gtacgactcc ccaatcctgc atatgggagg ggtggacatt gatctgacca      3300
     acgagctaaa agtgttggga cttataatag ataataagct cacctttaac aggcatgtgg      3360
     cggaaatttc caaaaaggcc attggattct acaggcgtct cagtagagcc gccagagccg      3420
     ccaaaataca ctggggctta aatccagaaa ttcttaggac tctttataac gcagtagttg      3480
     aaccgattat gctgtacgcg gcaagcgcat gggcgcctgc aacaagaaag aagtgtgtgc      3540
     ggaggcgact caattcggtg cagcgcggct ttgtgcagag gatgacgaag gcctacagga      3600
     cggtatctct gaactcgacc ttgctgctcg ccggagtgct ccctcttgat ataagggtca      3660
     gagaagcagc gatgctgtat gagacaaaga gggggcactc ccaggctgtg gtaggggatc      3720
     gagggatgga gcgtcctgtg gcttttgcca acctggatca tccggctcgg cggaagcgct      3780
     gggagtacag aagcctgaca gatggtgcag agctcgagag tcacatccgt gagtgcccta      3840
     gcatattcac ggatggaagc aaaattgagg gcagggtcgg agcggcgctc tccatatggg      3900
     agggaaccgg cgagatcaaa acaaaaaaac tgaagctggg gtcgtactgc accgtctacc      3960
     aggcggaact actggcgctc cttaaagcca ctgaggaggt attgagcggt ggggctgcta      4020
     catataacat tttctgcgac gcaagatcca cccttgatgt catcgccagt ggcgaatctc      4080
     tccacccatt agcgttcaaa atcactaaaa atttaaagac cataacagaa cgcaaccaag      4140
     aaattagact tttttggatt aaagcgcaca ttgggttgga aggaaatgaa agggcggatg      4200
     tacttgcaaa ggaagcggcc ctatccttaa aatgcaagcc gcattatgat cgctgcccgg      4260
     tctcgttcgc caagagaacc atccgacagg ggtctgtcga cgaatgggac ttacgttaca      4320
     caaccgaaag tacggcatcg gtcacaaaga ttttctttcc gaatgtaaaa agctcctata      4380
     gcataataag aaggcttgag gtagactcca cactcacaca ggttttcacg ggacacggcg      4440
     ggctctcaca gtatctacat cgatttaggt gcaaggagag cccggcgtgt gtttgtgatc      4500
     ctgtaaacca agaaagcatt gtgcatgtgc tgatagaatg tccagtgcat gcaaaagaaa      4560
     gatttgacac cgaacaacat atagatttaa atatagaagt aagaaaccta ccattgatat      4620
     tagcagataa gaaaaataga agcaaattta tcgaatattg taaaaaagta attagaatag      4680
     taataaatag aaataagcag taaatgatta ctaaaatata taataaaata agtatatatt      4740
     attagtaaca ataaaaacgt aagatgtgca aaaagaacaa gaaaacatgt aatagatata      4800
     agtaggttaa tgaaatagta agagaaataa cggatatggc aacaatggac atagattaat      4860
     aataaaatat atataagaca ggtggggttt attagaataa gatgaaatat tgttagtagt      4920
     cagtaacgaa atattaataa agataaaata aatgatagta ggccaaagta ggatctccca      4980
     aagaaggagt agaatggata gggtgtaagt taaaatctaa atacgaatcg gatgtaaaaa      5040
     gactctgacc tatgttaggg gaaacagtaa cgccctgtga tgacgggtaa aaaaataaaa      5100
     aaaaaaaaaa aaaaaaa                                                     5117
//
ID   CCRP1       repbase;    DNA;    INV; 187 BP.
XX
AC   X04359;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Grasshopper repetitive sequence.
XX
KW   CCRP1; Repetitive sequence.
XX
OS   Caledia captiva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Gomphocerinae;
OC   Caledia.
XX
RN   [1]
RP   1-187
RA   Arnold L.M.;
RT   "The heterochromatin of grasshoppers from the Caledia captiva
RT   species complex.";
RL   Chromosoma 94, 183-188 (1986).
XX
DR   GenBank; X04359; Positions       1     187.
XX
SQ   Sequence 187 BP; 45 A; 42 C; 44 G; 56 T; 0 other;
     tcctttctcc taatcggctc ggtaatctgc cttcttaatt tgttacgtag catttcaacg        60
     agggtgctat acctatacaa agtttcataa ggcgcactct gacaggactg tagttacacg       120
     cccttgaata tagcagggaa ggtccgtgcc acgtgacgct ggaaatttta tcggttttcg       180
     gagagga                                                                 187
//
ID   CENSAT_CC   repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Cicindela campestris centromeric satellite sequence - a
DE   consensus.
XX
KW   SAT; Satellite; Simple Repeat; CENSAT_CC; Centromeric repeat;
KW   satellite sequence.
XX
OS   Cicindela campestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Adephaga;
OC   Caraboidea; Carabidae; Cicindelinae; Cicindelini; Cicindela;
OC   Cicindela.
XX
RN   [1]
RA   Gallin J. and Vogler P.A.;
RT   "Evolutionary dynamics of a satellite DNA in the tiger beetle
RT   species pair Cicindela campestris and C. maroccana.";
RL   Genome 46(2), 213-223 (2003).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Cicindela campestris centromeric satellite sequence - a
RT   consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 379 BP; 124 A; 75 C; 54 G; 126 T; 0 other;
     taagtccaaa tggtgcaccc ctcgctaact ataaaaggta gacggttgaa atttacaata        60
     tacgtcgaaa gtaaaattct cttttgaatt cagttttatt gccgcagcaa cgtctcaaat       120
     tttgataaaa ctggttccaa tgcaaatcat gtcgtgtata acaatttcat aaatcaccaa       180
     cttccttcta attttcgacg agaaaaaagt ttcgattttc ccaactttta gtaagtattg       240
     ctgtagagca atgacaactc tacacaaacc gtaaatttca acctcgtcac cctcatagtt       300
     tccgagaaaa tcgactttat tttatcgttc atttttaagt gtatatttag aaattagcaa       360
     gcttaaacgg cgtatttct                                                    379
//
ID   Chapaev-1_AA repbase;    DNA;    INV; 3370 BP.
XX
AC   .
XX
DT   30-SEP-2007 (Rel. 12.09, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Autonomous DNA transposon - a consensus sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev-1_AA.
XX
NM   Chapaev-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3370
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev - a novel superfamily of DNA transposons.";
RL   Repbase Reports 7(9), 774-774 (2007).
XX
DR   [1] (Consensus)
XX
CC   Chapaev-1_AA is a very young family of DNA transposons. The
CC   genome contains two copies of Chapaev-1_AA that are 0.5%
CC   divergent from each other. Chapaev-1_AA belongs to the Chapaev
CC   superfamily. Hallmarks of the Chapaev transposons are 4-bp
CC   target-site duplications, terminal inverted repeats with the
CC   conserved '5-CAC and GTG-3' termini, and the Chapaev transposase.
CC   The Chapaev transposase is characterized by the conserved
CC   D-x(60-80)-D-x(220-290)-E catalytic triad. Chapaev transposons
CC   populate genomes of different animals, including sea urchin
CC   Strongylocentrotus purpuratus, amphioxus Branchiostoma floridae,
CC   starlet sea anemone Nematostella vectensis, sea hare mollusc
CC   Aplysia californica, mosquitoes Aedes aegypti and Culex pipiens,
CC   and nematode Caenorhabditis elegans. The N-terminal portion of
CC   Chapaev transposase in Chapaev-1_ACa, Chapaev-2_ACa,
CC   Chapaev-3_ACa, Chapaev-1_BF, Chapaev-2_BF, Chapaev-1_NV,
CC   Chapaev-2_NV, Chapaev-3_NV, and Chapaev-1_SP is similar to the
CC   N-terminal portion of RAG1 (100-370 aa in the human RAG1). It
CC   includes a novel type of zinc finger, called Chapa:
CC   H-X7-C-R-X-C-G-X35-D-X4-H-X4-C-X2-C-W-Xn-C-X2-C-X8-G. In the
CC   amphioxus and anemone Chapaevs, the N-terminal portion contains
CC   also the RING finger motif. Some Chapaev transposases (e.g.
CC   Chapaev-2_ACa) show low similarity to the RAG1 core.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(705..2336,2403..2726)
FT                 /product="Chapaev-1_AAp"
FT                 /note="transposase."
FT                 /translation="MKPKNHEQNQQTVCVLCLSKNKLQKLSEAAISRIRSF
FT                 ILPDIVAKAWYYPKKICTHFSFVLYECNSTENLQSKINLHVYKYDQRVSTR
FT                 SGALCQCEICIAARVTLPNLIDPQKKSRKRGRPAVLEESKRARFTKLCTKC
FT                 FSEMSRGKQHICTIVQRQNNVLQIVQGDRPQAGDAIITAYLRHKQPDEDGT
FT                 ISLANNRGRPTRCALNAPTPSSQKGLSVDDLCLIKKNCNLSTRNTIKLSSY
FT                 LRGMDIQIPSKLRKSLTQENQKLKNFYSVAHFQFETTKASQENDLEALPKP
FT                 VIYCNDVKGFINYVEKERNICQKDVFYKIGADGGGGSFKITLSIVDKERTT
FT                 KKGEKDTGEKKLFLLAVAPGMSELYCNISKVWTTLLQLDNLEAVVAGDLKI
FT                 INLLLGIMGHSSSYPCPYCITKKPVLSQVCKDSRTLGQILENYTQWMDQGA
FT                 DGKRAKYHYNCVQKPLLCGSPETTTVTLCPPPTLHITLGILNAIFKAVEVA
FT                 DPVTAARWVTVSACQRHSKFGFTGRNCHKLLAKRSVLSSDGPLGKFRSVLD
FT                 GFAELFKACLQETLEVGYLQKIEDFATSWLDAELPNSSKFHILRFHVPEFC
FT                 SSTQSGLGKYGEQACETVHFDFGITWEKLKVPESSECYDERLLRSVVLYNS
FT                 SHV"
XX
SQ   Sequence 3370 BP; 1131 A; 622 C; 654 G; 963 T; 0 other;
     cacggtgtct ttgtggggtc actttattac aaaaaaatag gtatgactga aatttaaaac        60
     taaaaacatt tagactttgc tcgttctttt gcgcctaaaa tcaaaaaaat cgatcggggg       120
     gtccagaaca ttttttttta ttttgattga ggtatttatg gatacatagt tctgtatacc       180
     aacgtgcgtt tgtatatatg tgtatgtatg tatgaaggta tatatgtatg catacatgtt       240
     tgtatgtatg tatgttatgt gtgcatgtat ttgtaagtac atgaataata aatatcgtag       300
     caaaattatc tagttctatg cgtcatattg caaaacacct tttgtcttat gagaacaaaa       360
     actaacagta ttttactgcc gttctacgca tatttgtatc gcagttcata aggtttacat       420
     agaacatggg acaactaggc gcagaagggc attttattag ttgaaacata ggacccggtg       480
     caagcaatgt ttacacaaaa tgaattcata aaacatccag tgaacgttga ttccctgtgt       540
     ttaatgggaa cccatattca ctggatgttc atgttttgat tcatttattt ctaaacacta       600
     cctgctgcgc atgacatttc ccgatgagaa gaaaaaagag taaatcgatc aaattagcca       660
     gtgcagtgcg aaaactgaaa tcgacccctt ggtttgttgg taaaatgaag ccgaaaaatc       720
     acgaacaaaa tcaacaaact gtttgcgttt tgtgtttaag taaaaacaaa ttacaaaagc       780
     tttcggaagc agcgatttct cgtattagga gcttcattct tccagatatt gttgctaaag       840
     catggtacta tccgaagaaa atttgtactc atttttcttt tgtgctgtac gagtgtaatt       900
     ctacggaaaa tcttcaatcg aagattaacc tgcacgtgta caaatatgat caacgagttt       960
     ccacaagaag tggcgcgctt tgccaatgcg aaatatgtat agccgcacga gtcacgttgc      1020
     caaatttgat cgacccacaa aaaaaatcca gaaagagagg aagaccagct gttttggagg      1080
     aatcgaaaag agcgcgtttt actaagcttt gtacaaaatg tttttccgaa atgtctagag      1140
     gaaagcagca tatctgcaca attgttcagc ggcaaaacaa tgtgctacaa attgtacaag      1200
     gggatcggcc tcaagccggc gatgccatca taacggcgta tctgaggcat aaacaacctg      1260
     atgaagacgg gacaatatct ttagccaata atcgaggacg accaacgcgc tgcgccttaa      1320
     atgcaccaac gccatcttcc cagaaagggc tttcggtcga tgatctttgt ctcatcaaaa      1380
     agaactgcaa tttgagcacg agaaacacga taaaactaag cagctaccta cgaggaatgg      1440
     acattcaaat cccttcaaag ttacgtaaaa gtttgactca agaaaatcag aaattgaaaa      1500
     atttttattc tgtcgcccat tttcaattcg aaaccaccaa agcaagtcag gagaatgatc      1560
     tggaagcttt gccaaaaccg gtcatttatt gtaatgatgt gaaaggattc atcaattacg      1620
     tggaaaaaga gagaaacatt tgccaaaagg acgtattcta caaaatagga gctgatggag      1680
     gaggtggatc gttcaaaata accttgtcaa tcgtcgacaa ggaacggact actaaaaagg      1740
     gagaaaagga cactggagag aaaaaattgt ttttgctggc tgtcgccccg ggtatgtcag      1800
     aattgtactg caacatttcg aaggtttgga caacgcttct tcagttggac aatttagaag      1860
     cagttgtagc gggagacctc aaaattatta accttctttt aggtattatg ggtcacagtt      1920
     catcctatcc atgtccatac tgcattacaa aaaagcctgt attgtcacaa gtatgtaaag      1980
     attcgcggac cttaggacag atccttgaaa actatactca atggatggac caaggggcag      2040
     acggtaagcg ggcaaaatac cactacaact gcgtgcagaa accgttgttg tgtggatccc      2100
     ctgagacaac aacggtaacg ctctgtccac cccctaccct tcacataaca ctaggaatac      2160
     tgaatgccat tttcaaagct gtggaagtgg ccgatccggt aactgcagca cgatgggtga      2220
     cggttagtgc ctgccaacgg cacagtaagt tcggtttcac gggaagaaat tgtcataagc      2280
     tgctagctaa gcgaagtgtt ttaagttcag atggtccact cggaaaattt cgttcggtaa      2340
     gataggtaaa atattaattg atgcgttttt aataagtgta ctttctgttc taatttgcgt      2400
     aggtccttga cggctttgca gagttgttca aagcctgcct tcaagagaca ctcgaagttg      2460
     gatatcttca aaaaattgaa gatttcgcca caagttggct agatgccgaa ctaccgaaca      2520
     gctcaaagtt ccacatattg agattccatg tcccagaatt ctgcagctca acacaatctg      2580
     gacttggaaa atatggagaa caggcttgtg aaacggtaca ttttgatttt ggaatcactt      2640
     gggagaaatt gaaagttccg gaatcatcgg aatgttatga cgaacgttta ctacgttccg      2700
     tagtgcttta caatagcagt cacgtataat ttccaaagca tattcgaata attactttgt      2760
     atatattaaa tatgaatcta aaaataaaaa ccaatttatt gccaggcgag tacggattct      2820
     tttaaaatta aaatgcgata ctttcacaaa aataaaatat tgttttcgaa ttgggaaaac      2880
     ttgctttaaa ataggtaaat aacgagcgta catgaatatt aattttctac aataacaagt      2940
     agaatttgta aaagaagcat gtgaacctcg taaaaatgtc aatcctcagt atgctcagta      3000
     aactaaaata tttactaaca tacaaacata catacattca ttcattcata tatatataca      3060
     tccataaata catacattca tatatacata catacaaaca tacatatatg catacatgca      3120
     tgcatacaaa cagacatata catttacata tgtacataca cacgtagcta cgcaaatatg      3180
     tacatatgtg catatctcct gtaatgcatt gcaaatggaa aaatttcaaa aaaaaatttt      3240
     actctagacc ccccgaccga ttattttcgt tttggccgca aatgaacggg aaagacttag      3300
     acttttatgt ggcgaagttt cagacttacc tatttttttg taataaaatt gttctacgaa      3360
     acacaccgtg                                                             3370
//
ID   Chapaev-1_BM repbase;    DNA;    INV; 1147 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   DNA transposon - consensus sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev-1_BM.
XX
NM   Chapaev-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1147
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 934-934 (2010).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           461..1009
FT                 /product="Chapaev-1_BM_1p"
FT                 /translation="MMKQFVKALDKNNASFEYLCKKIPRLSDAKIKEGVFD
FT                 GPQIRSLMADEKFDATMNNTESDAWLAFRDVVNNFLGNNKHPDYKNKVANL
FT                 LDKYQKLGCNMSIKLHFLDSHVDFFPDNLGDYSEEQGERFHQDIKTMETRY
FT                 QGRWNVNMMADYCWSLTRDITEDTHKKTTPRRNFVAKRKRCHSK"
XX
SQ   Sequence 1147 BP; 409 A; 173 C; 192 G; 373 T; 0 other;
     tatcacatca ggttttaaaa aaaattaaga cattggctat tttaaatttt ttgattaaaa        60
     taaattaaat tttagatttt ggcgctcttt tctcgaatcg tgcgacctct cgtgaggaaa       120
     tatattagtt gcaacaacga cacacccatt cgaaacaggt tacatgcaaa taaacctcta       180
     cagttacttt gttcataaac tttttactga aattagtgtg tttatttaaa aaaaaatctt       240
     acgttacgta cttatatata tttttttaat ttttttttac ttatatacaa aatttccatg       300
     cttcttgtgc gagtgggaca gtagagcacg agacaagcac tacgttcaaa aataatggaa       360
     tcctcgtaaa aatctcaaag taggaacaaa aaacgttata cgaaaaaaat taattagtcc       420
     tgaaaaaatt ttactacctc cgcttcatat caaactcggt atgatgaaac agttcgttaa       480
     agcattggat aaaaacaatg ctagttttga atacctgtgt aaaaaaattc caagattatc       540
     tgatgcaaaa attaaagaag gagtgttcga tggaccgcaa atcagatctt tgatggctga       600
     tgaaaaattt gatgccacaa tgaataacac tgaatcagat gcttggctgg cgttcagaga       660
     tgttgtcaac aattttctag gaaataataa acatcccgac tataaaaata aggttgcaaa       720
     cttattggat aagtatcaaa aattggggtg taatatgagc ataaaactcc actttctaga       780
     ttcacatgtg gacttttttc ctgataatct tggtgattac agtgaagagc agggagaaag       840
     gtttcatcag gacataaaaa ctatggagac aaggtaccaa ggtcgatgga atgtgaatat       900
     gatggctgat tactgctggt cactgacacg tgatattact gaagatactc acaaaaaaac       960
     tacacccaga cgtaattttg tcgcgaaacg taaaagatgt cactctaaat agtcctgcag      1020
     cattgtttag actcaatgtt ttctttgtaa atgttcaaat atatgttttt gtaatatgat      1080
     tattgatttt ttcgttaaat tttgaaaaaa atgctttttc cttcttttaa aaaaatctga      1140
     tgtgata                                                                1147
//
ID   Chapaev-1_DTa repbase;    DNA;    INV; 3183 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3183
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A young copy, 99% identical to the a few others. 3-bp TSDs (TWA).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(664..2139,2099..2422)
FT                 /product="Chapaev-1_DTa_1p"
FT                 /translation="MDYKRLFNCLNDPNDFCFVCGKYVKKKRSEIPVFNNK
FT                 MREWYKECFSRNFSKFNSKWTPNVVCVLCRVNLYKWSKTRRYAIINLHIRP
FT                 PIKYNFLICRSAFWFKTPMIWREPQNHSVDCYFCLSKLCGVGRSATWNYAE
FT                 VQSVTFPNASKFSENLTCVATDESSEETCVSNDSETLPELEKLTQETLNDL
FT                 IRDLKLTKEKSELLASRMKQHGFLSQNVNSSIYRSRHEKFSKYFSKQDSIC
FT                 FCNDIDALFKELNVNHIPMEWRLFIDGSKESLKVVLLHNGNEKPSLPIAHA
FT                 VNTKESYEIMEALLKLIKYNEFQWKICADLKVVGMLCGLQGGYTKNCCFLC
FT                 LWDSRADSQHYIQKKWEARKRAVIGENNIKYKPLVNKENIILPPLHIKLGL
FT                 VKNFIKALNKESPAFNYLIGLFPALSYAKIKEGVFAGPEIKTLLKDNKFTT
FT                 LLSSKEAAAWKSFRLVVENFLGNNKAENYKTIVKNLLKNYKAMGKLSKTYL
FT                 KTIRLWVSYHKLLKVMLIMSTFLLAGVHMSLKIHFLDSHLDFFPENLGAVS
FT                 DEHGERFHQQMKDIERRYHGFWDTAMMGDYIWFLIRESDNSFYKKQIRSQN
FT                 YF"
XX
SQ   Sequence 3183 BP; 1048 A; 550 C; 602 G; 983 T; 0 other;
     caccagttta caaaataaaa tcgacctcac cctaatcgaa ggcaacctta attttccggt        60
     aaagtacatc tccctgatta agaaatgggc acttataatt ttttgtatgg tgtcaatttt       120
     tttttaagtg taaaaaacgt ttttggccct tttttatttt ttatctcgag ttctggtaaa       180
     ccgactgagg tcatcgatga ctcattttac gggtaatata ctgctcttta actttcttat       240
     acacagcatt gagtttcagt cattagttta gaagccacac cttgtcaaag tctaaaaaag       300
     caggtaaaat tcaagtttgg aaggcataaa tcgggtcata aaaaatacac gcctaaaaac       360
     cgaaattagt tttatagttt attcttaaag attgatcttt aacgaagaaa ttgagccatt       420
     gatcacgaca atccgtcggt aaatagattt ttgacagatt tttaatcgta tgtacctagg       480
     ctcagcattt tggagcagag gccgttaaac gagattttaa atttttagtg ttgggcaacg       540
     tcagaatttt gtgcaagtag ttatgcataa cgtcagtttc tgtgctatta gtgctgcgca       600
     agctgaaaag tatgcgattg cagttacgag gaaaacattt aatgatttgg caaaaagctt       660
     gacatggatt ataaaagact gtttaattgt ttaaatgatc ctaatgattt ttgttttgta       720
     tgcggtaaat acgttaagaa gaaacgttca gaaattccag tttttaataa taaaatgcga       780
     gaatggtaca aagaatgttt ttctcggaat ttctcaaaat tcaattccaa gtggacacca       840
     aatgttgtgt gtgttttgtg tcgtgtaaat ttatataaat ggtctaaaac ccgaaggtac       900
     gctattataa atttgcacat tcggccgcca ataaaataca attttcttat atgtagatct       960
     gctttttggt tcaaaacgcc aatgatttgg agagagcccc agaatcactc agttgattgc      1020
     tacttctgct taagcaagtt atgtggggtg gggcgttcgg ccacctggaa ttacgcggaa      1080
     gttcagtcag ttacctttcc taacgcttct aagttttctg aaaatttgac ctgtgttgct      1140
     acggatgaaa gttcagagga aacatgcgtt tcaaatgatt ccgaaacgtt gccggaattg      1200
     gaaaagctca cacaagagac tctgaacgat ttaattagag atcttaagct aactaaagaa      1260
     aagtctgaat tgctggcttc tcgaatgaag cagcatggct ttttaagcca gaatgttaat      1320
     tcgtcaattt acagaagtcg ccacgaaaaa ttttccaagt acttttcaaa acaggacagt      1380
     atttgttttt gtaatgatat tgacgctttg tttaaagagc tcaatgtaaa ccacatacca      1440
     atggagtgga ggttgtttat tgacggcagc aaggagagct taaaggttgt cttattgcat      1500
     aacggtaatg agaaaccatc tctacctatc gcccacgcag taaacacgaa agagtcatat      1560
     gagatcatgg aagctctgct gaaattaatc aaatataacg aatttcagtg gaagatatgt      1620
     gcggacctaa aggttgttgg aatgctctgt gggttgcaag gaggctatac caaaaactgt      1680
     tgtttcctgt gtctttggga cagccgagca gactcacagc actacataca aaaaaagtgg      1740
     gaagctagaa aacgcgctgt gattggcgaa aacaatatta aatataaacc attagttaat      1800
     aaggaaaata taattctccc accgctccat ataaaattgg gcctagtcaa aaactttata      1860
     aaagcgctta acaaagaaag ccccgccttt aattatttaa ttggcctttt cccagctctg      1920
     tcctacgcta aaattaaaga gggtgttttt gcaggtcctg aaattaagac actattaaag      1980
     gacaataaat tcacaacgct tttatcttcc aaagaagcgg cagcgtggaa atcctttagg      2040
     ctagtggttg aaaactttct cggaaacaac aaagcggaaa attacaaaac tattgtaaaa      2100
     aacctactta aaaactataa ggctatgggt aagctatcat aagctcttaa aagtaatgct      2160
     tattatgtct acgtttcttt tggcaggagt gcatatgtct cttaagattc attttcttga      2220
     ctcccacttg gacttctttc cggagaattt gggtgctgtt agtgatgagc atggggagcg      2280
     gttccatcag caaatgaagg acatagagcg ccgataccat ggcttttggg ataccgctat      2340
     gatgggtgat tacatatggt ttcttattcg agaatcggac aatagcttct acaagaagca      2400
     aataagaagc caaaactatt tttaaggttt agttttatac tgcgttaaat taaaaaaact      2460
     tgttctttcc ctactataac atccataaaa gttaatctat cctgaaacaa ataatttatt      2520
     ttctgtaaat aaagaaaccg taaccgcaaa acaaagaaat aatgaaatcg catacttttc      2580
     agcttgcgca gcactaatag cacagaaact gacgttatgc ataactactt gcacaaaatt      2640
     ctgacgttgc ccaacactaa aaatttaaaa tctcgtttaa cggcctctgc tccaaaatgc      2700
     tgagcctagg tacatacgat taaaaatctg tcaaaaatct atttaccgac ggattgtcgt      2760
     gatcaatggc tcaatttctt cgttaaagat caatctttaa gaataaacta taaaactaat      2820
     ttcggttttt aggcgtgtat tttttatgac ccgatttatg ccttccaaac ttgaatttta      2880
     cctgcttttt tagactttga caaggtgtgg cttctaaact aatgactgaa actcaatgct      2940
     gtgtataaga aagttaaaga gcagtatatt acctgtaaaa tgagtcatcg atgacctcag      3000
     tcggtttacc agaactcgag ataaaaaata aaaaagggcc aaaaacgttt tttacactta      3060
     aaaaaaattg acaccataca aaaaattata agtgcccatt tcttaatcag ggagatgtac      3120
     tttaccggaa aattaaggtt gccttcgatt agggtgaggt cgattttatt ttgtaaactg      3180
     gtg                                                                    3183
//
ID   Chapaev-1_HSal repbase;    DNA;    INV; 2911 BP.
XX
AC   .
XX
DT   10-DEC-2012 (Rel. 19.04, Created)
DT   10-DEC-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Putative DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element;
KW   Chapaev-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2911
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 832-832 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. The 3' terminus is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1304..2779
FT                 /product="Chapaev-1_HSal_1p"
FT                 /translation="MKNVIFVYVTCAVLIVKNSFNSKIKHLIKYPDVASVT
FT                 KPIPVASANLLPTSPVMIDECEEEPTSEKASDNEDFIAYDCDDTTPQLIDQ
FT                 AALNDLIRDLDLSKEKAELLGSRLQERNLLQTXGTTTYWHRFREKKYLKFF
FT                 SEQDSVVFCNDVSGLLQEXGVVYYPKDWRFFIDASKTSLKGVLLHDGNKYA
FT                 SIPIFHSAHLRESYTNMKLIFELVQYENHKRKLCGDLKAIGMILGQQGGYT
FT                 KFPCFLXEWDSRAHELHWKQKNWPKRKSLEXGSRNIVNETLIDPRDVLLPP
FT                 LHIKLGSMKQFVKALKEDSKCFQYLLKKFASLSEAKIKGVFTGPDIRRLMK
FT                 DDDFVKTTTDLEKKAWMSFKKVIEGFLGNVKEKNYKVLVTNMLNHFKNLGC
FT                 NMSLKLHFLHSHLDFFPDNLGDVSEEQGERFHQDIKEMERRYQGRWNATML
FT                 ADYCWCLKRDETNVTHKRRSNSRSFEEKKKILQITLNVTRRLVQFLP"
XX
SQ   Sequence 2911 BP; 939 A; 556 C; 571 G; 838 T; 7 other;
     gggtcgctga ttacgacttt gaagtcgaaa ttcggaaatt caaaatggcg gatcxaatat        60
     ggcggatagg atgtcgagat agagcatgat tcagccaaat aaggcaaaat aagccaatga       120
     gccagccgac tagggcaaaa ttcactggac taactttacg cagagatctt ctgtttcaca       180
     aattacaatc tacacttctg gaatgaacta ataatttcgt ttcacaaaca aataataaac       240
     tgcataaact attcttatcc agttttgtac cgacgctcgt gatttatttt taatattctt       300
     tcacttatca caattcaaat attttaagag aagaaaaact gttcgcttgc atcgacatcc       360
     aaaacaaacg ctaattaatt acatctgact aactgcacgc ggcgatcttc tgttttacaa       420
     atggcaatcc agacttctgg agtgcactag tcattccatc tcacagacaa ataactgcat       480
     cactatttag tttcttgtat cgtcatcatt catctttagt attttcgtta tatgtcacaa       540
     tgtctaacag agtttgtata aaccatcacc gaataaattc tgttacgttt gcggtcagta       600
     tatcctcgag aaacaaagat gtgattaata atactattaa agtgttgtac taccaatatt       660
     tcaatcgtga aattcaacac caagataaaa attgggttcc gcataaagtg tgcacaaact       720
     gttatacagg gtggggggtt ataagtttac aatccgaaat gtgaaggtaa attgggttaa       780
     gataaacata aaagtcccat agcgttttgc gaaattcgca ataattatcg agttattaat       840
     gacagaaatc tgaagaatgg gagcgccccg acatagaaga ttggagaagc gttgcagata       900
     ctcaggccgc actcgaccta gcaactgcgg cgtgcggcga gacgtagatc cggggagatg       960
     aaacaacgaa tagcagtgcg ttgtctttcc cctcgctgcg cgccggcaac agttgctgga      1020
     tcaactggtc cgcgctgcgg cttaagcagc tgcaacgctt ctccaatcat ctatgccggc      1080
     gcgctcccac tcctcaaatt tctgtcatta ataactcgac gattattgcg aatctcgcaa      1140
     aacggtatgg gacttttatg tttgtcttaa cccaatctac cttcacactt cgggttgtaa      1200
     acttataacc ccccaccctg tatagttctg agatattgaa gtaaaggtaa accagaatat      1260
     atgcttttca gtgtaccaat ggtttggcga gaacctacca gtcatgaaga atgttatttt      1320
     tgtttatgta acttgcgcgg ttttaatagt aaaaaatagt tttaatagta aaattaaaca      1380
     tcttataaaa tatccggatg tagcatctgt tacgaaacct attcccgtag cctcagcaaa      1440
     tcttcttcca acttctccag taatgataga tgaatgtgaa gaagaaccta catctgaaaa      1500
     agcatctgat aatgaggact tcattgcgta tgactgtgat gatactactc cacaattgat      1560
     cgaccaagct gcactgaatg atttaatcag ggatttagat ttatcgaaag aaaaggccga      1620
     actattagga tctcggttac aagaaagaaa tctcctxcaa acxaxtggaa caaccaccta      1680
     ttggcatagg tttcgtgaaa aaaaatattt gaaatttttt tctgagcaag attccgtggt      1740
     attttgcaat gacgtatccg gtttattaca agaattxgga gtagtgtact atcctaaaga      1800
     ttggagattt ttcatagatg cttctaaaac aagtttaaag ggtgttcttt tacacgatgg      1860
     aaataaatat gcctcaattc ccatatttca ctcggcgcac ctacgcgagt cttacaccaa      1920
     tatgaaactc atttttgaat tagtgcagta tgaaaatcat aagcggaaac tttgtggtga      1980
     cctaaaagca attggcatga ttcttgggca gcaaggcggt tacacaaaat ttccttgttt      2040
     cttgtxtgag tgggatagca gagcgcatga gttgcattgg aaacagaaaa attggccaaa      2100
     gagaaagtca ttggaaxcag gttcacgaaa tattgtgaac gaaacattga ttgatccgag      2160
     agacgtactg ctaccaccct tgcacataaa actaggatca atgaagcagt ttgttaaagc      2220
     actaaaggaa gacagtaaat gtttccagta cctccttaaa aaattcgcat ctctaagtga      2280
     agctaagatt aaaggagttt ttactggtcc tgatattaga aggcttatga aggacgatga      2340
     ttttgtaaaa acgacgacag accttgagaa aaaagcatgg atgagtttca agaaagtgat      2400
     cgaaggcttc ttaggaaatg tgaaagagaa aaattacaag gttcttgtta caaatatgtt      2460
     gaatcacttt aagaatttgg gatgcaacat gagccttaaa cttcactttt tgcattccca      2520
     ccttgacttc ttccctgaca atcttggaga cgtgagtgag gagcaaggtg aacgttttca      2580
     tcaggatatc aaagaaatgg aacgaagata tcaaggaagg tggaatgcaa ccatgctagc      2640
     tgactattgc tggtgtttga aaagagatga aaccaatgtc actcacaaaa gacgttccaa      2700
     ttctcgaagc ttcgaagaga aaaaaaagat tctacaaatc actttgaatg ttactagacg      2760
     tcttgttcaa ttcttgcctt agttggctgg atcactgatc gatcttgcct tagttggctg      2820
     gatcatgctc tatctcatca tcctatccgc catattagat ccaccatttc gaatttccga      2880
     attttgactt caaagtcgta atcagcgacc c                                     2911
//
ID   Chapaev-2_DTa repbase;    DNA;    INV; 2625 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2625
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 3'-end truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(890..1465,1432..2286)
FT                 /product="Chapaev-2_DTa_1p"
FT                 /translation="LNQEQLSNLFVKLLSKNNSLKMCKNSPSRFCYVCGCY
FT                 FLNPKKCVKITDGVCAYKQYFGIDPKNVSKPWTSKSICLTCSSRLLLFKSA
FT                 KEKYLTFGRPVLWRNPMDHNTDCGGKFGKLVYPDVASVSKVEEHSSHFQKP
FT                 TINRNNNVVPVDEETTSDSSESEHSESGNSVRKPMSQEDLYDLCRDLNFRK
FT                 KSPVSRFKFSKEKLEVLASRLREHGFLKTETRILFYRNQGKIFEIFFSKTN
FT                 DFCFCNNVSELFEAVGEHHNPADRSLFIDGSNYGVKAVLLYKGNEKPSMPI
FT                 YSSNVKETYETMKLLMELIDYKSYNWEICCDLKVVAIHTGLQGGYTKFSCF
FT                 LCFWNSRADALHFSQHDWPNRKDHVIGEGNVLKAALVRAEDVILPPLHIKM
FT                 GLMKNFVKAMAKDPHSKGMKYLKTKFPKLSTEKVKAGICFCWASNKKIVDR
FT                 RTFYKFITTCRKIGLEGFSGSGSRISGKRKKR"
XX
SQ   Sequence 2625 BP; 905 A; 433 C; 478 G; 809 T; 0 other;
     cactagttta cagcaaaaaa aaggtaagcc ttgagaccaa tttttttttg attagttttg        60
     agttgcttat cacgctgaac aaatttaaaa aaattcccaa agaaccgttc tgaagatatt       120
     cgcaaaaatt cagattttcg gcacatcttt tataaaaccg tacagatctc aaaaaccatt       180
     gtaaataaat aaataataat aaacttgtaa cttacacttt ttaaaggcaa ggtacaacct       240
     ctgaaagttc aaaaaaattt catttctgtc gtttttttgt tatagctagt tttcatttac       300
     ttaaaaaaaa tacacataaa aatgtttaaa atattttgag cttttagatc taaaggctgt       360
     tttgttgtta acaagctaag gccatatatt tgtaaatgga gtgcaaattc taggagatat       420
     gcatttttaa gtgaaacaac ccatttccaa aaaatgcttt taaaggcaag tgacctgctt       480
     ttgttagttt gctttttgac atatgaacaa aataggagta tttgttgtac attaagtata       540
     ccgaaacata tttcaaatac atttaaggta tttaaactaa aatcgtaaaa caaaatcggt       600
     ggagcctctt cgaagaatgt atggtttttg gtaagcaaga aatttttaag atcgacaaaa       660
     gactttatta tttatacttt ttcccccatg ataataagaa acttcccgca tttgcatcca       720
     gcaatagtcg cctagcattc cttcatccca aaaaaattgc ttttcaaatg ctgaaaagaa       780
     atccaaatga ctatcaagga agtgcgtttt aaacaaaaag tagtggaaga aaatcggtgg       840
     tcctctgaga agaacatttt gcaaattttg ggtgcactac agttcttgac tcaatcaaga       900
     gcaattaagt aatcttttcg taaaacttct ttcgaaaaat aacagtttaa aaatgtgcaa       960
     aaattctcct tcgagatttt gttacgtttg cgggtgttat ttcctcaacc caaaaaagtg      1020
     tgttaaaata acagatggtg tctgtgctta caaacagtac ttcggcattg atccaaaaaa      1080
     cgtatctaaa ccatggactt ctaagtcaat ttgcctcaca tgttcaagtc ggttactctt      1140
     gtttaaaagt gcaaaggaaa aatatttaac gtttggaagg ccggttctgt ggagaaatcc      1200
     aatggatcac aatactgatt gcggtggaaa atttggcaaa ttagtttacc ccgatgtagc      1260
     atcagtatcc aaagtagaag aacattcctc gcattttcaa aagccaacaa tcaaccgaaa      1320
     taataatgtt gttccagttg atgaagagac tacaagtgat tcaagtgaat ctgaacattc      1380
     agaatcggga aattccgtcc ggaagcctat gagtcaagaa gatctctatg acctgtgtcg      1440
     agatttaaat tttcgaaaga aaagttagaa gttcttgctt cccgattaag ggaacatggt      1500
     tttttaaaaa cggaaactcg aattttattt tacagaaatc aaggcaaaat ttttgaaatt      1560
     tttttttcaa aaactaatga tttttgtttt tgcaataacg tttcagagtt atttgaagca      1620
     gtaggagaac atcacaatcc tgctgacagg agtttattta ttgacggaag caattatggc      1680
     gttaaagctg ttttactgta taagggaaac gaaaaaccgt ctatgcctat ttattccagt      1740
     aacgtcaagg aaacatatga gaccatgaaa ctgcttatgg aactaattga ctacaaatcc      1800
     tacaattggg aaatatgttg tgacttgaag gttgttgcta tacacactgg tctccaaggt      1860
     ggatacacaa agtttagctg ctttttgtgc ttctggaata gcagggcaga tgctttacat      1920
     ttttcacagc atgattggcc aaatcgaaag gatcatgtca tcggcgaagg taatgtcctt      1980
     aaagcagccc ttgtccgtgc agaggacgtt attcttcctc cgctgcacat aaaaatgggt      2040
     ttgatgaaaa attttgtaaa agcaatggcg aaagatccgc acagcaaagg tatgaagtac      2100
     cttaaaacga aatttccaaa gctatccacg gaaaaagtca aagccggtat atgtttttgt      2160
     tgggcctcaa ataaaaaaat tgttgacaga cgaacatttt acaaattcat tacgacctgc      2220
     agaaaaatcg gcttggaagg cttttcagga agtggttcac ggatttctgg gaaacgaaag      2280
     aaaagataat tccagtcatt taattaagac catgatgaaa acctttcacg ccattggtga      2340
     gtggtataaa catttaaata agattacaat cctttaagtt agtcatatgc cttaatactg      2400
     gtctcttaag atgcacttcc ttgacagtca tttggatttc tttccgttga acttggggca      2460
     aaaagtaata tgataaaagg atatgtcatc atttgaaaag cgctaccaag gtttctagga      2520
     tgaaagaagg ctaagcgact attgctggat gcaagtacgg gaagtatctt cccatcatgc      2580
     gcggaaaagt ttaaacaata aagtcttctt ccgagtctaa atatt                      2625
//
ID   Chapaev-N1_AAe repbase;    DNA;    INV; 2794 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Chapaev DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N1_AAe.
XX
NM   Chapaev-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2794
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 832-832 (2011).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 4-bp TSDs. TIRs are ~300 bp long.
CC   Both terminal ~150 bp are ~74% identical to Chapaev-1_AA.
XX
SQ   Sequence 2794 BP; 902 A; 471 C; 483 G; 938 T; 0 other;
     cacggcgtgt atatgggaaa ggtttatcac aaaaaaatag gcatcgctaa atctttcacc        60
     attcgaaaat ataggttttt agctttcatt tgacgtgttc cccaaaaaaa tccaccgagg       120
     gatcccgaac attttttttt atttaaaatt tttgttcttt agagtacatt atttttaaat       180
     gtaatcattg caaaagacag cttcgttgga taaaagtttt atttccatat aaaagttcat       240
     aaaataaata tatatacata tctattgagt ttcattttgt aaaaaacaaa actgtcctat       300
     gtgattttga ggatttattg agctatagga cacttattcg attagatatg ttgtaagttc       360
     gactgttcac ttattcatac tgtggaagta tatctaaccg agcactgttt cttttcatgg       420
     ttagaataca ttaaatttat tcttcttctg tctggcatta cacctctgct gggacatagc       480
     ctgcttccca gcttagagtt cgttgagtac ttagttattg attgagaatt ttctttgcca       540
     atcaaccgtt aaagattaaa agtagaatgg atcaacatta caacggccta cgaaagtaaa       600
     tggaatatgc ttaaacgccc tgttacccaa gccttagcaa aaagcttaaa aaatcctcat       660
     taagaatatt atccaggcac ccggagtaag tgacactaca cagacttttt taatagtatt       720
     gaagttattt tgatgttttt agcttggaat ttcaaaattt aataagaata tagtggaaga       780
     tatttcctgt taaatcaaat cataaaaata attccaccgt gaaagtggtt ttctgacaag       840
     cagaacaaca ataatacaat tttcacaatt actgcagtaa ttaaaacacg taagtagctt       900
     acaaacaaga aagttttacc attttatact ccttttagat tgatatcata ttcatataat       960
     atatgttttc aacatgaaat atggttaatt atgtgattat tggcaacggt aagtgttatg      1020
     aggaagaata aaaagttaaa tttcatgtgc ccacttgccc cgtagagttg agtaactgca      1080
     atttacagta gatttttatg actttattct aagggtttca atatctcgaa aagatacctt      1140
     cccattcgtg cggacatcag cgaatacagg gtgcaacttt tgcaattttt tgggctattt      1200
     catgaaagca acatcaatca agtggctgca tttattggtc gtagcaaaat gagctccata      1260
     cagcatgcat tttacattac cttttggagc tttttggggg gttttgcgat gatagcgact      1320
     caagagtctg ccttgagctc tgcctctgtt tttacagtag ctccataaac ttaagtcagg      1380
     aggagtcaaa ttaggatctc caaattcaaa tcatgtgtcc cttttttatg tcagatgtcc      1440
     atggaatttc cgttgcagag acataatgaa caaacttcca aagatatcga atttatcgac      1500
     tgtttcgtac tgtttgaaaa aaaaaatgac tcaatgattc ttttggtctg gtccaaactg      1560
     ttagtactta cttggtcatg gaatggcgtt tcttgaatct tgaatagatt ttctgttcct      1620
     caaatgtggc atttttgctt atttatgaag ccagattgtg cctgttgacc acgatatttt      1680
     caaggatata acagttgagt taacacaact gcaagactat tttcaattca aagagtcact      1740
     attttggcat gttgtttttt tatatcatat taattgtgga aaatatgaca atattaaccc      1800
     agcagcaagt gatattgatt tgtaaaaatg gttcaaaaga gctctatttc gtatcaatcg      1860
     tttggcagcg tccatttatt acgtaacgct aaaatcggaa atttttgacc acctcacccc      1920
     atccccctcc gtaacgtttt ttgtatggaa aaattaaacg ctattccccc ctccccctag      1980
     agcgttacgt agtttgtgga attttcagga tggttgatta gatctcatcg gtcgagtata      2040
     tttttcttac acacaatata aaaaaaaaaa caatcatgat aggcgaatca aattctcagt      2100
     taatgagtaa ccgaagaact cttatttgag aacctggctt tgtctcaata ggggtgtaat      2160
     tccagaaaga aggaaaagaa aattaatctt ttctaaatat gaacagaaac agttatacac      2220
     tagaatcaaa tacacactta aatccgaatg ccgatctcag ctgtgcaaat ctcggtaaaa      2280
     ggtcgtttgt tgacatctta gtaaaagtga cgtttggtaa cggcacccaa aggtgctgtt      2340
     ttaagtaaac ttgatgttag gctgacatat cagttaaaat taatttgctt accgctcagc      2400
     tgtgcggatc ttggtaaaag aatgaaaatt agttgaactc aactgagtgt gtcctccact      2460
     gtacgagtaa gtgtcgtatc cccaagatca cataggacag ttatgtctat tacaatatgt      2520
     aatcttatat atctatgtta tatcaacttt catttgaaat ttgggctacc atcgagcttg      2580
     agagaaaaaa aaactgtctt ttaccatgat tatatttgaa aatattgtac ttcaaggaac      2640
     aaaaatttaa aataaaaaaa aatgttcggg atccctcggt ggattttttt ggggaacccg      2700
     tcaaatgaaa gctaaaaacc tatattttcg aatgctgaaa gatttagcga tgcctatttt      2760
     tttgtgataa tattgttcta ccagacacgc cgtg                                  2794
//
ID   Chapaev-N1_DTa repbase;    DNA;    INV; 1383 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   30-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1383
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6160-6160 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1383 BP; 459 A; 234 C; 231 G; 458 T; 1 other;
     cactagttta cagccgaaat gctccccagc aattgatggc aaattctgtt agatttggac        60
     ccctagatca cgaaaatagc actaaatttt ttttcgatgg cacagttttt ttttaaagat       120
     tttttaaagt ttgaaatgtt aaatttcgga cttttttcga atttcttctt atatctcggc       180
     agatatccac tcggttgggc cagttttagt tttattttaa agtcaataga tcagagctta       240
     actttgccat acagatcaat acgattggat gagtaatggc agcgcagaag cttgacaaag       300
     atgaaaaatg tgttttttgg tcgtctgtaa gtcggctgta catatcgtaa aaactcgaaa       360
     taaatccgtt gaaaaatcat aacgggtaca aacttaaagt ttgcatccta ccgaataaaa       420
     caagccggat atggcccaaa tccatggaaa actggattta tggtggattt ttaaagttcg       480
     gatttttcca cttttttcgg ttgacagagt ccaaatttaa gatttatcat aggcggcgac       540
     atgtaaacaa aaataattgg tgctggcagc cgggtcacta aatagctaaa tcagatattt       600
     aaaagctaga aaattattaa agtgaattta attttttaat taaggttact tttttcataa       660
     gaatgaacta tccaaatgga tagtacttag ttaaaaatac tcacagtcat aacgcaagca       720
     attttatatt tttaaaggaa ttttcagaaa ttaaatttat tttataattt tctagctttt       780
     aaatttagct attttttgac ccggctgccg tcaccactca tttttgttta catgtcgccg       840
     cctatgataa atcttaaatt tggactctgt caaccgaaaa aagtggaaaa atccgaactt       900
     taaaaatcca ccataaatcc agttttccat ggatttgggc catatccggc ttgttttatt       960
     cggtaggatg taaactttaa gtttgtaccc attatgattt ttcaacggat ttatttcgag      1020
     tttttacgat atatacagcc gacttacaga cgaccaaaaa acacattttt catctttgtc      1080
     gagcttctgc gctgccatta ctcatccaat catattgatc tgtatggcaa agttaagctc      1140
     tgatctattg actttaaaat aaaactaaaa ctggcccaac cgagtggata tctgccgaga      1200
     tataagaaga aattcgaaaa aagtccgaaa tttaacattt cgaactttaa aaaatcttta      1260
     aaaaaaaact gtgccatcga aaaaaaaatw agtgctattt ttgtgatcta ggggtccaac      1320
     actaacagaa tttgccatca attgctgggg agcacaccaa gaatattatt ttgtaaacta      1380
     gtg                                                                    1383
//
ID   Chapaev-N2_AAe repbase;    DNA;    INV; 3829 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Chapaev DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N2_AAe.
XX
NM   Chapaev-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3829
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 833-833 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TIRs are ~140 bp long and ~70%
CC   identical to those of Chapaev-1_AA.
CC   The region 1748-2031 is an inserted FEILAI_AA (~95% identical to
CC   consensus).
XX
SQ   Sequence 3829 BP; 1205 A; 666 C; 767 G; 1191 T; 0 other;
     cacggtgtct ctggtagaaa acattaatat aaaaaaatca gtatcgctga aacacccacc        60
     aaatgaaagc ttaggctttc ccctttcatt tgagaccggt ttgaaaatgt tctatcgggg       120
     ggtcctgaac attttttttt attttagtaa gagatacgta ccataggtga tcttcttcca       180
     ccaatagtat gatacaatga atcgcttgta ccatatgatg acaactcaat cgaaccgtag       240
     aaggccatga caaatatttc tggacaaaca tttgaaaagg gctggagagg tcttgagcct       300
     tttttcagaa acgttgctgt tgagcccttt ttagctcgcc catgcaaact aacaccacta       360
     tcagaaagat tagtgttagc tcttcctgat agtagtattg gtgagcgtga tcgagttgaa       420
     ttgggctcaa cagcgtctta caaagccatt gtttaccaat gtcgatgtgc cctttttaaa       480
     tgtttgtcca gatttccata aaacaagctt gtttttgttt tggcagtgtt gctgttcagt       540
     tgattataaa ttcagtaaat agtaaaattg tatattttta atcaaaattt atttatttat       600
     acaaaactaa aatggttgta aatagtattt aaaattttaa ataaaaaaaa tgtttagaga       660
     tttgaaagat tttcaataaa taacccttat ttagattcag ttgtatgcta ccgtcttaaa       720
     attcaaatat attttcataa gatattgctt tttacgatta gtaataaaca aagcgtttga       780
     gaaaacattt actcatggat cattacatta caaatggttt cacagattgc aacaaacaac       840
     taaattggca tcaatggtag ggaaatcggc gctgcgttat aacgcttcat tgcttaagtt       900
     gtcgcgttct aaggtggtat agcgaaaaat tggtgcttgt gtcgcgtgat aagtttataa       960
     attcattgtt ttgggtcaac attttggttt gctgattaga ggtatgcctg ttaataatta      1020
     caataaatat atcccaattt cacacctatt aataaatata tatatttaca ctacactctg      1080
     tcaggagacc tgaaacatga aaccgaaaag ccacgaagac aatcgttcga agatttgcgt      1140
     attgtgttta aagaatttgt gtctgcaacc gttatcagca atagtggttg atattattga      1200
     acagcacatt cttcacgaca tcaggattaa agtctggtat tgtcctacaa aaatatgtcg      1260
     agcttgcacg tttattcgtt cagtaaccaa tttaaacttt tgaatatagc actgtataaa      1320
     tataaataca atttaaaacc taccactcga agcatgtaat gatgtgagaa caacaatctc      1380
     accaaaacta aagggaaaac gtggtagaca cagtaatgca aaaagtaagt gccaattgaa      1440
     ttggttggtt gtcgaatcta cacggtttac cacccaactg agaatctatt caacatctgt      1500
     gcaacctaaa aaaaaaccca tttgttcgct gatgacttgt ttttgattaa aaaaaatgtg      1560
     atttgagcac cagatgagcg ttgcagttga gcagctgtct aaggggtttg gatgttgcaa      1620
     tcgccccaaa catcgctttc aaaatcagca gacttaacca atcagttcag gggtttttag      1680
     aggtaacaca tctgcacttt gatttgaacg ataatgcaga aactgtaaat gcatataaat      1740
     gcgttcaggg gccttcctta gccgagtggt tagagtccgc ggctacaaag caaagccatg      1800
     cgaaggtgtc tgggttcgat tcccggtcgg tccagaatct tttcgtaaag gaaagttcct      1860
     tgacttccct gggcatagag tatcatcgta cctgccacac gagatacgaa tgcgaaaatg      1920
     gcaacattgg caaagaaagc tctcagttaa taactgtgga agtgctcata agaacactaa      1980
     gctgagaaac aggctctgtc ccagtgagga cgttaatgcc aagaagaaga acgttcaggg      2040
     gttagttgat tatgtgacgt ccaaaaaggg gggttggcct gggcagttcg atctgcaagc      2100
     gatggagaag ggtcctttaa tcatttaccc tgtcgattat cgagcataat tccgacgtca      2160
     tcgggactca aggccgatgt aaggatactg gcgtaaaaat actgttgctg cttgctgttg      2220
     cttctggcgt tccagaaaaa tatggcaata ttgagaaaat ctggaagaca ctgttctgct      2280
     atttgaaatc gtcaatgttt ttgcaaaatg gagtaatacc atagtcatca aatgatgatg      2340
     tttgatcact tctgaatttg tagattgttt agaattcgaa ggaatacaag ttgttttgcc      2400
     acattggaat cgtaaccgca taaggcgcat taggtttaaa tggcctagta atgcaatagc      2460
     atgaaaccat atcagaatta ttttctgacg attcacctag ttgtgatatg agtgccaaaa      2520
     ttcagctcgg ataacactcg attcggtaat tttagaaatt tgttcctgca tactgccata      2580
     aaatgcacac ttggtatccc atttgaatcc tgttctgtaa tgctacaaat tgcaatttgg      2640
     gcagtgttgc ttttgaataa tttaggtgct ccattgctgg agatttgaaa atcgtcaatc      2700
     tgtttttcgt aataatggga ggtagttcaa catttccttg cccatactgt accacacaaa      2760
     aaagatttat ccaatttagc tggtcatcca cgaatacttg tcacatacgc gtccgcgaaa      2820
     tggaaaagtc tcggctcgga ccataaactg gcggagcagt tcttcaattg tatttactat      2880
     ccactgctcc aaattgatcc aaataatgtc gaggaatggg taagcatcag cagtttgatt      2940
     gtgtgattca taaagatgac cttaaaataa ttcttttatc acaggtgagg atcatcagtt      3000
     gccaacgcca caacaaatgt ggattcacca gctgaaactg tcagaagctt ttgaaaaatc      3060
     ggcatgtttt ggaagtgaaa tgggatccaa gtttgctagc aattgtaatt tatcgtactg      3120
     ttctgtaaat tatctctttt caatgaaaaa atgtatttca ggcgcttgat cattctgatc      3180
     aggtacataa aagttgtttt caaacgagtc tggatgatga ttttgcagaa aaggttgaga      3240
     acttttcaaa aacgtggatt gcttacccaa tagctcgaag ttccatattt gcgctatcat      3300
     atcccggagt tttgtgaaat cacaggaagt ggtttgagca aatacgggaa acaagccagt      3360
     gaaaccgtgc atttcgattt tcaagttgct tggaatcatg ttaaggttcc ggagaactcc      3420
     gaagcatatg atcgacagct tctttgagct gtagtaatgt acaatagtga gcatttgtaa      3480
     gccgtattaa ccgtatttac tttatcgata tgtcgtgtat gtaattggtt taaatagaat      3540
     ggtataatgc taaatctaaa tcctttttat taattggtta actattcgta gtaaaatttc      3600
     tcatggctac ctagataagc atgaaagaaa atgactgtgt gaaccataat ttagaaatca      3660
     gtactgaaaa aacggcattg tactgttttg aaaaaaatgt tcaggacccc ccgatagaac      3720
     atttccaaac aggtctcaaa tgaaagggga aagcctaagc tttcatttgg tggatgtttt      3780
     agcgatactg atttttttat attaatgttg ttctaccaga gacaccgtg                  3829
//
ID   Chapaev-N2_DTa repbase;    DNA;    INV; 1137 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1137
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6141-6141 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 1137 BP; 375 A; 185 C; 192 G; 385 T; 0 other;
     cacaggaaca caaaattaaa ctttgtgaaa tttccacgaa ccatttcaag ttttccatga        60
     tatttgggtg ctcctgagta aaagtcccat acaaaattat tttccatcac ctacaggttc       120
     cgcggtatag ctaagaatac aaaaaaccga tgtttgccga cattttgaat tacgtggcct       180
     atataattgg accaaccttt attattttcg gtaggaccta ctctcaatac atcaaggcat       240
     tcctaaaaaa tagtccccat tgtgaaccat tgcccatgtc tttggaattc gacgccaaag       300
     ttgaaaatcc caaaattgta gagatttttc tgatggaaaa acaattctga ggattaaatc       360
     ttgaatggaa gtaattttaa ctattcattg tatctattgt tcattgtatg ctttaatttc       420
     ggtttaaagc gttttcatga gaacatttta ttggatttct tatactaata aaaccgtttt       480
     ttttatttca ttatctactc ctaaatgttg tcaaatttta aaaaagtcaa ggcatcctac       540
     agaatgggag taaacattta catttctctg tgtatgttca gtgaacgtat tttagtttct       600
     tagttttaga ggttgccatg acttattcaa aatttgacaa catttaggag tagataatga       660
     aataaaaaaa tcggttttat tagtataaga aatccaataa aatgttctca tgaaaacgct       720
     ttaaaccgaa attaaagcat acaatgaaca atagatacaa tgaatagtta aaattacttc       780
     cattcaagat ttaatcctca gaattgtttt tccatcagaa aaatctctac aattttggga       840
     ttttcaactt tggcgtcgaa ttccaaagac atgggcaatg gttcacaatg gggactattt       900
     tttaggaatg ccttgatgta ttgagagtag gtcctaccga aaataataaa ggttggtcca       960
     attatatagg ccacgtaatt caaaatgtcg gcaaacatcg gttttttgta ttcttagcta      1020
     taccgcggaa cctgtaggtg atggaaaata attttgtatg ggacttttac tcaggagcac      1080
     ccaaatatca tggaaaactt gaaatggttc gtggaaattt ttggctgtgt acctgtg         1137
//
ID   Chapaev-N3_AAe repbase;    DNA;    INV; 2429 BP.
XX
AC   .
XX
DT   12-OCT-2010 (Rel. 15.10, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   A non-autonomous Chapaev DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   m4bp_Ele14b; Chapaev-N3_AAe.
XX
NM   Chapaev-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2429
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2429
RA   Kojima K.K. and Jurka J.;
RT   "Chapaev-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as m4bp_Ele14b.
CC   [2] Consensus update and characterization as non-autonomous
CC   Chapaev. ~98% identical to consensus. This consensus is ~99%
CC   identical to the original sequence in [1]. 4-bp TSDs. TIRs are
CC   ~140 bp long and ~85% identical to those of Chapaev-1_AA.
XX
SQ   Sequence 2429 BP; 769 A; 438 C; 428 G; 794 T; 0 other;
     cacggtgtct ttgtggagta actttattac aaaaaaatag gtaagtctga aatttcgaac        60
     taaaaacaat tagactttgc tctttcattt gcgaccaaaa tcaaaataat cggtcggggg       120
     gtccagaaca ttttttttta ttttgtgtga agtattcatg gatatgtgtt tttgtaccga       180
     cacacattgc gttgaacata gatacgggac aaactgcaag atcaaaccat ttgaacacct       240
     tggcttggaa ggtaaagttg ttcttgctca aaagagctgt aataagcata tatgacatat       300
     gatatacgca taattgcaaa actgtctcaa acgtcatttt agttattgtc cacgaaaaac       360
     cttgaaaatc gtacttaaat tggtcataat gatgtaagaa gttattagga aatattttta       420
     ataggtgaag atgcatcgat atcaaacctc gaattttcaa gagcttgttt gtagatttgt       480
     atcttgagaa cctgacaacc ttttgcgttg aacattttat tgattagtcg ccaccagcga       540
     gtgaccagtg agttaccggt tgtctgcttc tctagacttg tgcttttgaa aattcgaggt       600
     ttggcttcta tgtatattca cccttaaaac cattgataac cgagtgtgta gctcgttgtt       660
     attaagcaga taaacggacc aaaataaaaa ctgtcaccgc tgggagacag aggaggatct       720
     tctcttcgtc gtagcattgt gaaataaagt gtaaatccat tcgtttgctc agtaataaca       780
     agctatggct tttaggacga gatcataaat tatgcgagat ttctcttttt actcgtaggg       840
     gatggtacac aaattatgtc acgctaaatt tcaatttttt cgaccccccc ccccttgtca       900
     cactttctgt atgagtcctc cgataatttt gtaaggcttg tcacgcatgg cttaaccccc       960
     cccccccctt ggagcgtgac gtaatttgtg catgacccct agatacaaaa gtgacttatc      1020
     cgcctttcaa acaacacaat ttcagttatt cgaattaact agtagagggc ttcgcatgtg      1080
     ataaaccttg ttataaggca tgtaatatac ttgccccatg gtgctgaaaa atacgctaat      1140
     ttggatggta tttgagaagt ttcaaatctt atatttttta tgttattttc ttaatggcac      1200
     agtgcttatg aaaagatcag aaactaacat catgaggcta aaatgggttt gggatttttg      1260
     tacttgtttg cagtactata accccatatt aacccctcta ccggcagctt cattttttca      1320
     aaatattcaa atcgcgataa cttttttgtt tctcaatatt tttgaaaaaa aattccacaa      1380
     cttctcaaaa aactctctta ttttcagaat ctgtatcggt tttgagcatt ggtcatctat      1440
     attcggagat attccaaaat tccttggggg accgacgcat agccataact ctcgtaatta      1500
     tctctggcta cagatttttt ctcatattcg gttattcgct tttcaaaact aaactttgat      1560
     gaaagtctat tgtgaagaaa ttaaacaaat cggtgtaact gtttttgagc aatgagcttt      1620
     tatgtttttg gtaccactct agccgtaacg agatcttgaa aacttcttaa aacatcatat      1680
     tgaaatttta tatgggaagt gtcggtcccc caaggaacac cgaaatattt ttaaaaccag      1740
     ttgaccaatg gtcaataccg acatagattc caaaagtaga agagtttttt gagaagttgt      1800
     gaaaaaatgg tggaaaaata tagagaaaca aaaaagttat cgcgattcaa atatattttt      1860
     gtgctgaaaa aatgaagctg ccggtagagg ggttaagcta aataatagca aacaaactca      1920
     tgaatatctc ttctgctatc tgtcgaattg aatttctctc ttcagcaaat ttctttatta      1980
     tggtttgaag aatgagcttt tacaatggga taataagttt gtacttacat tacagtacaa      2040
     gcgtgtttgg aacatacctc aaaatttctt catagtaatt tccatataaa cctacattgt      2100
     ctttgggcca ccttaaatca ccacctagaa agctgcgaat ttcacagaac actattttta      2160
     tagtaaggat agtaaggaac atatgtgaga ttgaattctc aaacattttt taattttgaa      2220
     ccgccctaat gtacataaac acatagatag gcaaattcaa acatatgtgc aagtctctcg      2280
     aaatcaaaca aaaaaaaata ctctggaccc cccgaccgat tattttggtt ttagcagcaa      2340
     atgaacgcga gaaacctaga ctttattgtg gagaagtttc agacttacct atttttttgt      2400
     aataaacttg ttctacgaaa cacaccgtg                                        2429
//
ID   Chapaev-N3_DTa repbase;    DNA;    INV; 1020 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1020
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6142-6142 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3-bp TSDs (TWA).
XX
SQ   Sequence 1020 BP; 346 A; 156 C; 161 G; 355 T; 2 other;
     caccagttta caaaaaaaaa tcgatgaaat ataccatgaa tgaaaccttt gttttccggt        60
     aaggtacgtc ttcctgatta agaaaatggc acttaaaatt ttttttatgg ataaaatttt       120
     ttttaaagtg taaaaaacgt ttttgacact tttttaattt ctaacttgag ttgtggttaa       180
     ccgatttcaa ccataaatga ctcattttac aggtaataga atgccctcca actttcttat       240
     acactgcatt gagttccatt cattagttta gaagctacat ttcgtcaaag ttgaaaaagt       300
     tagaaaaaat gcaaaaatgc tggcataaat ggcttcgtta aaaatacacg cctaaaaacc       360
     gaaattattt ttataacttc tactggtaga aggtgctttg acaaaaaaaa caagctattg       420
     atcattacaa tccaccagca aattaatttg atatgcattt ttgaagcttg cgacaacggt       480
     gtttttttgg ccgtttacag ctgttaactg acacaacagg gctctaacag ggctgtaata       540
     cccgtttttc ccaacgtaaa aaatcgatat aaaatcgaac tattgattga tttttttgtt       600
     gatggtcttg ttagttgact gaaagatgta tctttaagta taagtcataa aactaatttc       660
     ggtttttagg cgtgtatttt taacgawgcc atttatgcca gcatttttgc attttttcta       720
     acttttwcaa ctttgacgaa gtgtagcttc taaactaatg aatggaactc aatgcagtgt       780
     ataagaaagt tggagggcat tctattacct gtaaaatgag tcatttatgg ttgaaatcgg       840
     ttaaccacaa ctcaagttag aaattaaaaa agtgtcaaaa acgtttttta cactttaaaa       900
     aaaattttat ccataaaaaa aattttaagt gccattttct taatcaggaa gacgtacctt       960
     accggaaaac aaaggtttca ttcatggtat atttcatcga tttttttttg taaactggtg      1020
//
ID   Chapaev-N4_AAe repbase;    DNA;    INV; 2032 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Chapaev DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N4_AAe.
XX
NM   Chapaev-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2032
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 834-834 (2011).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. 3-5 bp TSDs. TIRs are ~140 bp
CC   long.
XX
SQ   Sequence 2032 BP; 674 A; 356 C; 344 G; 657 T; 1 other;
     cacggtgtct ttgtggagca actttattac aaaaaaatag gtaagtctga aatttcaaac        60
     taaaaacaat tagactttkc tctttcattt gcgaccaaaa tcaaaaaaat cggtcggggg       120
     gtccagaaca ttttttttta ttttgtgtaa agtgtttatg gatatgtgtt gttgtaccga       180
     cgcacattgc gtggaacgta tggaggtacg ggacaaactg caagatcaaa ccatttgaat       240
     accttggcat ggaaattaaa gttgttcttg gtcaaaagag ctgtaataag cataaatgac       300
     atatgatata cgcataatcg caaaactgtc tcaagcatca ttttaattat tttccacgaa       360
     aacccttgaa aatcgtacct aaattggtca taatgatgta agaagttatt aggaaatatt       420
     tctcgcataa cttatgatct cgtcctaagg tgaagatgca tcgaagtcaa acctcgaatt       480
     ttcaagagca caaatctaga gaaccagaca accttttacg tcgaacattt tattgattgg       540
     tcgccaccag cgagtgacca gtgagttacc ggttgtctgc ttctctagac ttgtgctttt       600
     gaaaattcga ggtttggctt ctatgtatct tcaccctaaa aaccattggt aactgagtgt       660
     gtagctcgtt gttattaagc agataaacgg accaaaataa aaactgtcac cgctgggaga       720
     cagaggagga tcttctcttc atcgtagcat tgtgaaataa agtgtaaatc cattcgtttg       780
     ctcagtaata acaagctaca cacttggtca cctatggctt ttaggacgag atcatacatt       840
     atgcgaattt tctcttttta ctcgtagata caaaagtgaa ataccggaat cttttcaaat       900
     gtattacata cttgcacata aattacaaat cttgataatt tatttttttt attggaaata       960
     gttgctttat ttgttattct aataggtgga tacttataga tggataacag ttttataaaa      1020
     tgaccggtcg catttgaaaa aaagcgctga aatctcgact aatatccatt ctccagtatt      1080
     cctagtatac ttaaatattt acttacagat atacatacgt acattcattt atatatacat      1140
     ccaaacatat gtacattagg gcgattcaaa tttgaaaatt gtttgaaaat ccaatctccc      1200
     atatgctcct tagcatcctt accataaaaa tagtgttctg tgaaattttc agctttctag      1260
     gtggtgattt aaaggtggcc caaagacaat gtaggtctat atggaaatta ctatggagaa      1320
     tttttgagaa atgttccaaa cacgctatta ctgtaatgta agaaaaaact tatcatccca      1380
     tattgaaaac tcattcttca aaccttaatg aaggatgttg ctgaagaaac aaatcccttt      1440
     gagctaattt tgtttgggat ttttgtacat gtttgcaggg ctataatccc atattaagct      1500
     aaataatagc aaacaaactc atgaatatct cttctgctat ccgtcggatt gaatttctct      1560
     cttgagcaaa tttctttgtt atggttagaa gaatgagttt ttacaatggg ataataagtt      1620
     tgtacttaca ttacagtaca agcgtgtttg gaacatatct caaaatttct tcatagtaat      1680
     ttccatataa acctacattg tctttgggcc acctttaaat caccacctag aaagctgaaa      1740
     atttcacaga acactattta tatagtaagg atgacaagga acatatggga gattggattc      1800
     tcaaacattt ttaaattttg aaccacccca atgtacataa acacacggat acgcaaatac      1860
     aaacatatgt gcaagtctct cgaaatcaaa caaaaaaaaa ttactctaga ccccccgacc      1920
     gattattttg gtttttgcag caaatgaacg cgagagacct agactttatt gtggcgaagt      1980
     ttcagactta cctatttttt tgtaataaag ttgttctacg aaacacaccg tg              2032
//
ID   Chapaev-N4_DTa repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-733
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6143-6143 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3-bp TSDs (TWA).
XX
SQ   Sequence 733 BP; 227 A; 139 C; 134 G; 233 T; 0 other;
     cacaggtcga caaaatcaag actttttctt ggcccaagaa taaacgctac aaaacctgaa        60
     agaattttag ctgtagatta ctacctcata cttggaaact ttccatcacg tcgaagtttt       120
     tagaaatccg tggtcaaagt tccaaatttt cgatttttag gcactttttg cggcttaata       180
     gtaagaaaac ctttcgtagc ccagagccac aatttagcgg aagtggtacc ttgaaccttt       240
     aacttcaaga gtgtccaatc acaaagctgg gcgacctcta tttctttagc tacaatggat       300
     tttacagaag tactttttgt cacttttttt catctatagt agcctgatat tttccttgtt       360
     gaactgagac ccgtacacat acaatacatt aaaaatatca ggctactata gatgaaaaaa       420
     agtgacaaaa agtacttcag taaaatccat tgtagctaaa gaagtagagg tcgcccaact       480
     ttgtgattgg acaatcttga agttaaaggt tcaaagtacc ttttccgcta aattgtggct       540
     ctgggctacg aagggttttc ttactattaa gtcgcaaaaa gtgcctaaaa atcgaaaatt       600
     tggaactttg accacggatt tctcaaaact tcgacgtgat ggaaagtttc caagtatgag       660
     gtagtaatct acagctaaaa tcctttcagg tttggtagct tttattcttg ggcttttttt       720
     ttgtcgacca gtg                                                          733
//
ID   Chapaev-N5_AAe repbase;    DNA;    INV; 2588 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Chapaev DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N5_AAe.
XX
NM   Chapaev-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2588
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 835-835 (2011).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. 4-bp TSDs. TIRs are ~140 bp long
CC   and ~80% identical to those of Chapaev-1_AA.
XX
SQ   Sequence 2588 BP; 820 A; 465 C; 458 G; 844 T; 1 other;
     cacggtgtgt ttcgtagagc aatttcaaaa caaaaaattc ggcatgtctg aaattttgac        60
     acaagaaagc catgattctc ccctttcatt tgcaaccaaa acgaaaataa tcggtcgggg       120
     ggtctagaac attttttttt ttcaattttt ttacggagtt tgggatataa cttaacctta       180
     gtaaggacct tgggtcgttt tcgacccatt tcaaaattca aatcattgta acttttgatt       240
     aaaataacct agcaatttga cgttttctga caattaggta ttttttgtgg gaacatttat       300
     ttttgcggaa acaaaagttt tgaatggccc cttagggagc ttccataaaa taaaagttac       360
     aaattgtgac ttagggtcgt tttcgacccg aaaattcaaa cagctcgaaa aaatcagtgt       420
     gttgaccgaa tttagttctg ttgggctgaa atgaaaggca cacatgtcga ttttcggaaa       480
     cccatccgga gatccggaat tgcgtcactg tggccaccgg gaacctgcta catctgaaaa       540
     aaaagtccct ttagagaccc ttactttgac aacctgtagt ttcgtaacta aacaagtaat       600
     ctgaaccgtc ctcatattgt tgaataggta tttacgtgga ctgtaaatag agattctcaa       660
     atcatttagt tattcatacc cggttccgga aacccggaac atccgaaaag taagtttcca       720
     tcgcagtttt gtgtatgtaa ttcacatcgg tactattcgg ttgatggata ttttgtcata       780
     aaatttctct gtaataagga accaattacc ggtgcacatc ccttgaaaaa ctcggtccag       840
     tatggtccat gcggaaccgg ttcctggaga cccggaaggt agccaatctg gacaattcga       900
     tgaaattact cggattgatg ccaaaaaacc aaatgaattg tgtccaactc ataacgattt       960
     attatgtttg aatgtatttt gccaaaagaa tgaattgatg gttattctgg tccttttgga      1020
     gcaccgaaat gaccaccgga aaacccgtaa tatgggacca ctaagtttta gcaccaaaac      1080
     taggcatgcg acggctcaaa cttcatgatt ttgaatccct gtgactcttc taattcaatt      1140
     atagcgccaa ctcgaacgtc ttttgatgga agattagcat caaaagtcgt tcgagctggc      1200
     gcttttataa gttttgaaca caacaaagct atacgaaaca tagtacttga gatctgctgg      1260
     atataaatag caaacaagtc tgtatgcact aaagatcacc gtttttggct ccttttttgg      1320
     tgtaatcgga gacttttatg attcacctga tatttttgtt aaagcttcgt atgatttcgt      1380
     tattaagcta gcaaaatcgt aaagttactg agtaacattt tcaaagctga ttgaatgtat      1440
     ttgttttatg aattactata gaattccgta caactctaat aaaactatgc taaaactgaa      1500
     cattacagca cttattgaga tctctaagca aaatgttacg atcacacgat caatctttca      1560
     caggtagatt tgttatgaat gaaacctttc gatgtttgta tgaattcatt tgcacttttt      1620
     ctaccatcaa tttaaaaagg aagtgtatat tcgtcagcat tattattaat attcttatct      1680
     ttatttacga gattttcagc cctagactgg ctgctaatct gagaatattt gtcagcaatt      1740
     ctgtttgttt taccatcgca aacaaaagca atgttctgtc aattctcaca acaaacacat      1800
     ggacaatagt gtcaacattg cattgctatt gcaattgggt tggaatattg gatttatgaa      1860
     atgttatatt gcgtctgtca ttggcacaaa tgtgaacttg tcaattttct agaatctatg      1920
     acataaggtc gaaagggcaa aagatcgaag aggaataaag aggggataaa aggtcaaaaa      1980
     tcttctttca aaaatgattt aatttcccat aatgcaaatc actttcaacc tttggtcctt      2040
     ttgacctttt gcattttcga ccatttgtct tgtcttcctt ttgtctttcg acttattgtc      2100
     ctttcgacct tttgtctttc gatcgcttgt tcctaaacca agtcagaaag atgaatattg      2160
     ctcttgagtt acaaataaaa attgaaaaga ggttgtttga catacttagt tttaaaagca      2220
     atgcaaattt caacaatgga tgaaagcaaa agagaggcaa ctcgaaaatt taaatttcgg      2280
     cctcggcctg taaattttta ggtctagagc tgtctagaat ataatctaca agatattgac      2340
     actagatttt tgcaacattt tcatctaaat ccgtttsaac agttcacctc accaaaattt      2400
     attaatttac ggtgcattta aaatgatatt acaaacaaca aaatttcaaa aaaaaaattg      2460
     cactagaccc cccgatggat tattttcatt ttagcagcaa atgaaagagg aaggtcttgt      2520
     ctttcattgg tccaaatttg agacatgccg atttttttgt tataaagtta catgaaaaag      2580
     acaccgtg                                                               2588
//
ID   Chapaev-N5_DTa repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   08-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-594
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6144-6144 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3-bp TSDs (TWA).
XX
SQ   Sequence 594 BP; 187 A; 106 C; 113 G; 188 T; 0 other;
     cactgtgcaa catttttagg gttataaaat gtaaccgcaa ttctgatttc atgggcggaa        60
     agaactcatc gaaataagct aaaacccatt tgggtttctc tggcttagct cgcgtttacc       120
     tattatagcg agttaaagtt ttacatacaa aatttatttg taacggccat atcttgtgaa       180
     ccgattaaaa tttcactatc aagtcttcag tgattatgta gctatgaacc caaggaacta       240
     aattgacaaa tgactcttgc gaagacgtac acctagcgcg ttaaaaatcg aaaaattagg       300
     caaatttgtt ttttaacgcg ctaggtgcac taggtgctaa gtgcgcaaga gtcatttgtc       360
     aatttagttc cttgggttca tagctacata atcactgaag acttgatagt gaaattttaa       420
     tcggttcaca agatatggcc gttacaaata aattttgtat gtaaaacttt aactcgctat       480
     aaaaggtaaa cgcgagctaa gccagagaaa cccaaatggg ttttagctta tttcgatgag       540
     ttctttccgc ccatgaaatc agaattgcgg ttacattttt catgttgcac tgtg             594
//
ID   Chapaev-N6_AAe repbase;    DNA;    INV; 743 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Chapaev-type DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N6_AAe.
XX
NM   Chapaev-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-743
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 836-836 (2011).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. 4-bp TSDs (TTAA).
XX
SQ   Sequence 743 BP; 248 A; 136 C; 122 G; 237 T; 0 other;
     cccctctacc ggcagcttca ttttttaccg caaaattcaa attcaaatcg ttataacttt        60
     tttgtttttc aatatttttg caccattttt tcacaagctc tcaaaaaact cttctagttt       120
     taggatctgt gtcgatattg atcattggtc atctggtttt gaagatattc caaaattcct       180
     tgggggaccg acccgtaact agaacccccc gttaatttct caggccgcag aattttaatc       240
     gtattcggat attcactctt cggaacaata cattaatgag agtatgttgt gaaaaaatga       300
     agcaatttgg tgcagccgtc tttaagtaat gaccatttag gtttctggaa ccacgctggc       360
     caaataaaga tcttaaaaac ttcaaaaaac atcatatcgt aattttcaga tatctccaag       420
     aatactgaac cgatttgtat gattttttca gagaagctcc ttattacctg gcattatata       480
     gcccacattt tatttttttg ataaattgat caaaaacaaa atggccgcca aagacatttt       540
     atatggaaaa tgtcggtccc ccaaggaaca tcggaatatc tttaaaacca gatcaccaat       600
     aattaatatc gacacggatt cctaaactag aagagttgtt tgagaacttg tgaaaaaatg       660
     gtgcaaaaat attgaaaaac aaaaaagtta taacgatttg aatatttatt ttgcggtaaa       720
     aaatgaagct gccggtagag ggg                                               743
//
ID   Chapaev-N6_DTa repbase;    DNA;    INV; 563 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev-N6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-563
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6145-6145 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 3-bp TSDs (TWA).
XX
SQ   Sequence 563 BP; 200 A; 87 C; 91 G; 183 T; 2 other;
     cactagttta cagcaaaaaa cgagataaac gttgagacca attttttttg attagttttg        60
     agttgctgat cacgctgaac aaattaaaaa aaattcccaa agaaccgttc tgaagatatt       120
     cgcaaaaatc cagattttcg gcacttcttt tataaaacct aacagatctc aaaaaccatt       180
     agaccaataa acttgtaact tacactattt aaaaggcaat agatgcacct ttccgaaaag       240
     ctattactcg ttgtgatcgg gtcgcaatta atggaggtac aacctgtgaa agttcaaaaa       300
     aagtttaatt tctggcgttt ttttgttata gctagttttc atttacttaa aaaaaataca       360
     aataaaaatg tataaattat tttgagcttt cagatctaaa ggctcttttg ttgttaacaa       420
     gttaaggcca tatatttgca aatggagtgc aaattctagg agatatgcat tttttagtga       480
     aacaacccat ttctaaaaaa tgcttttaaa ggcaagtggc ctgcttttgt tagtttggwt       540
     ttgacatatg aacmaaacag gag                                               563
//
ID   Chapaev-N7_AAe repbase;    DNA;    INV; 742 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Chapaev-type DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   Chapaev; Chapaev-N7_AAe.
XX
NM   Chapaev-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-742
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 837-837 (2011).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. 4-bp TSDs (TTAA).
XX
SQ   Sequence 742 BP; 240 A; 135 C; 131 G; 236 T; 0 other;
     cccctctacc ggcagcttca ttttttaccg ctaaaaaaat attcaaatcg cgataacttt        60
     tttgtttctc gatatttttg caccattttt tcacaagctc tcaaaaaact cttctagttt       120
     tagaatatgt gtcgatattg ataattggtc atctggatcc ggagatattc caaaattcct       180
     tgggggaccg acgcgtagcc ataacccacg taaatatctc aggctacaga atttttatcg       240
     tattcggata ttcactcctc ggaatgatac attaatgcga gtatgttgtg aaaaaatgaa       300
     gcaatttggt gcagccgtct ttgagtaatg agcatttatg tttctggtac cacgctggac       360
     aaataaagat cttgaaaact ctaaaaaacc tcatatcgta attttcagat ttctccaaga       420
     atactgaacc gatttgtatg attttttcag agtagctcct tattacctgg cattgtatag       480
     tacacatttt atttttttga taaattgacc aaaaacaaaa tggccgccaa agacatttta       540
     tatggagaat gtcggtcccc caaggaacat cggaatatct tcaaaaccag atcaccaatg       600
     attaatatcg acacggattc ttaaactaga agagtttttt gagatcttgt gaaaaaatgg       660
     tgcaaaaata tcgagaaaca aaaaagttat cgcgatttga atattttttt agcggtaaaa       720
     aatgaagctg ccggtagagg gg                                                742
//
ID   Chapaev3-1N1_AAe repbase;    DNA;    INV; 2706 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   A non-autonomous Chapaev3 DNA transposon family from Aedes
DE   aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   otherMITEs_Ele22b; Chapaev3-1N1_AAe.
XX
NM   Chapaev3-1N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2706
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2706
RA   Kojima K.K. and Jurka J.;
RT   "Chapaev3-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as otherMITEs_Ele22b.
CC   [2] Consensus update and characterization as a non-autonomous
CC   Chapaev3. >98% identical to consensus. This consensus is ~99%
CC   identical to the original sequence in [1]. 3-bp TSDs; usually
CC   TWA. TIRs are ~1140 bp long. Both termini are ~90% identical to
CC   Chapaev3-1_AA.
XX
SQ   Sequence 2706 BP; 806 A; 548 C; 546 G; 806 T; 0 other;
     cactgttcga caaaaaaagt cgatatgaat gcacagagac cggacacccc gggcttgaaa        60
     gtataaaaat aaacaaaaat aatggcgttt tcagaatgtt cgtgtctgcc ccaggtcatt       120
     tttaaaatat acttgaactt tttgcatttt ttatttaaaa atctaatcta atcaataaac       180
     cgacacagtg ttttatattc aggacagggg aattcatgtg ccatataatg ttttcaactt       240
     taaatacaat atgaagagtt gtaataagat ttgcagggag ccctcccccc ttttttgtac       300
     cctccccatt tttaaagtat cgcaaatgat ggaatatttg atatacaggg ggttgtcaaa       360
     ataactggga caggcaaaaa ttgggccaac tttggaatgc tgtaactttg acaaaaattg       420
     accgatttca attctttaag aagtaatgga cgggtcaact aatctagttt tgaggtgcat       480
     ccacggagat gaactatgac caccggatac cggtgataat ccggatttcc ggaagcatgt       540
     cttatgcagt aaaattatga cgtgttttta gcaaaggtct cggctaaaaa atcaaaattt       600
     tactacacat gaagatagaa gatctaattc tgaagcgatt ggtgcgccaa gtattaatat       660
     tggtccagaa acaaccaata tatggccatt tccccggaat cggtgccggt agtggatccg       720
     aattgggatc aaacaattta ttcactcaaa atatgtcgcg caatattgtt ttctccctag       780
     cttatcataa aataccctat tataagttga aaatgagtct tgtacagatt tggccactca       840
     tggcgccgcc cagtgccccg ggggaacctt gcatagggga catttcgatt ttgacaccaa       900
     agcatatcat gcgacggctc attcttcatg tcttgtcgta aatagggcaa ctgtagactc       960
     aaaatggata gttgactaca gtgactactt ccgggaccac cggatgtccc agagggaacc      1020
     tgtaattagg gacaattgaa attgaactcc aatacatatc gtgcgacagt tcatttttca      1080
     tgtctcgtgc taaatagggc tattgtagac ctaaagtgga taattgacta cagtggccaa      1140
     ttttgggact accggaattt cccggaggaa cttgtcatcg gggacatttc tgtttttaca      1200
     ccaaaacata tcatgcgacg gctctttctt catgccttgt cgtaaataaa ataactgtag      1260
     actcaaaatg ggaatttaat tgaattggcc acttttggga ctaccgggtg tcccctaggg      1320
     aacccgtgat tagggacaat tggaattgag ctccaatact catcgtgcaa cggctcattc      1380
     ttcgtgttta gtcatgaata ggtcaacttt agaccgaaaa tggatattta actagaatgg      1440
     ccactttggg gacctcctat agttccctaa ggaacctatc acttttggga ccaccggaat      1500
     ttcccggagg aatctgtcat cgaagacatc acagcctccc tcagggatat ccggtggtca      1560
     caaaagtggc cactgtagtc aaatatccac ttaaggtcta caatagccct atttagcacg      1620
     agacatgaaa aatgaactgt cgcacgatat gtattggagt tcaatttcaa ttgtccctaa      1680
     ttacaggttc cctcggggac atccggtggt cccggaagta gtcactgtag tcaactatcc      1740
     attttgagtc tacagttgcc ctatttacga caagacatga agaatgagcc gtcgcatgat      1800
     atgctttggt gtcaaaatcg aaatgtcccc tatgcaaggt tcccccgggg cactgggcgg      1860
     cgccatgagt ggccaaatct gtacaagact cattttcaac ttataatagg gtattttatg      1920
     ataagctagg gagaaaacaa tattgcgcga catattttga gtgaataaat tgtttgatcc      1980
     caattcggat ccactaccgg caccgattcc ggggaaatgg ccatatattg gttgtttctg      2040
     gaccaatatt aatacttggc gcaccaatcg cttcagaatt agatcttcta tcttcatgtg      2100
     tagtaaaatt ttgatttttt agccgagacc tttgctaaaa acacgtcata attttactgc      2160
     ataagacatg cttccggaaa tccggattat caccggtatc cggtggtcat agttcatctc      2220
     cgtggatgca cctcaaaact agattagttg acccgtccat tacttcttaa agaattgaaa      2280
     tcggtcaatt tttgtcaaag ttacagcatt ccaaagttgg cccaattttt gcctgtccca      2340
     gttattttga caaccccctg tatatcaaat attccatcat ttgcgatact ttaaaaatgg      2400
     ggagggtaca aaaaaggggg gagggctccc tgcaaatctt attacaactc ttcatattgt      2460
     atttaaagtt gaaaacatta tatggcacat gaattcccct gtcctgaata taaaacactg      2520
     tgtcggttta ttgattagat tagattttta aataaaaaat gcaaaaagtt caagtatatt      2580
     ttaaaaatga cctggggcag acacgaacat tctgaaaacg ccattatttt tgtttatttt      2640
     tatactttca agcccggggt gtccggtctc tgtgcattca tatcgacttt tttttgtcga      2700
     acagtg                                                                 2706
//
ID   Chapaev3-1_AA repbase;    DNA;    INV; 5071 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-1_AA is an autonomous DNA transposon - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-1_AA.
XX
NM   Chapaev3-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5071
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 42-42 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-1_AA belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-1_AA is a young family of mosquito Chapaev3 transposons:
CC   genomic copies of Chapae3-1_AA elements are ~98.7% identical to
CC   their consensus sequence, which was derived from multiple
CC   alignment of four Chapaev3-1_AA elements. Chapaev3-1_AA contains
CC   imperfect 1300-bp terminal inverted repeats and encodes a 574-aa
CC   transposase. This family is an outgroup among identified
CC   Chapaev3 transposons: the Chapaev3 TPase is only 35-39% identical
CC   to other Chapaev3 transposases.
XX
FH   Key           Location/Qualifiers
FT   CDS           1525..3294
FT                 /product="Chapaev3-1_AAp"
FT                 /note="transposase."
FT                 /translation="MFLHSSEKQSVNCKVKMDNSKCDLVRSLLCNICGLYT
FT                 PRHKQRNFTQLVIEKYKQYFKRDPQINENFSPNHLCVCCHSMLLKKEHRSI
FT                 LAVPMIWSVPDVAHMYCYSCLMPSLVGRKWCQRSEIQYPKRSLCTLPEKVL
FT                 PSDGMESEEEETCCPDNHEDDLPVINSTPTIATSSSYHPQPSTSAGHADNP
FT                 DLVGQASFDDLTRDLNLPSNLSELLGSRLREKKLLKTGTRTANRSKFDDFR
FT                 STFDEHNGITYLRNLHGLFELFEVDHDPTEWRLFIDGSVSSLKALLLHNGN
FT                 VYPSIPVAYSNIHKEKYNVLQDILYLINYPAFKWKIIADFKLINILMGLKS
FT                 GNPKFPCFICLWDRNNDGDKYSESAWPLRPSFDKYPGNKPDLYSAILEPLV
FT                 APEDILHPPLHIKLGLVTQLFKKIVQQNSKVKEHLKDLFPKLSDMKVEMGI
FT                 FDGPKIRDIFKSTDFDNILTIDEKSAYQNLKLVCAGFLGNNRANNYKELIS
FT                 NMMTCYKKLDINVTLKMHSLICHLARFPSNLGSFSDEQGERAHQDFKDIEQ
FT                 RFKGKNNVNAMGTYCWGLVRQKDPEEHKRQSPTKTKYFVVQYM"
XX
SQ   Sequence 5071 BP; 1721 A; 882 C; 900 G; 1568 T; 0 other;
     cacagttcga caaaaaaagt cgatctgaat gcacagagac gagacacccc gggcttgaaa        60
     gtatgaaaaa agacaaaaat aatggcgttt acagaatgtt cgtgtctgcc ccaggtcatt       120
     tttaaaatat acttgaacat tttgcatttt ctattaaacc cctctaccga cagcttcatt       180
     ttttaccgct aaaaaatatt caaatcactt tttgtttctt gatatttttg caccattctt       240
     tcacaagttc tcaaaaaact cttctagttt ttgaatatgt gtcaatattg ataattagtc       300
     atctagatcc agagatgttc caaaattcct tgggggaccg gcgcgtagcc ataacccacg       360
     taaatatctc aggctacaga ttttttatcg tattcggata ttctttcctc gaaatgatac       420
     attaaggtga acatgttgtg agaaaatgaa gcaatttggt gcagccgtct ttgagtaatg       480
     agcatttatg tttctggtac tatcctggac aattaaagat cttgaaaact ctaaaaaacc       540
     tcatatcgta attttcagat ttctccaaga aaactgaacc gatttgtatg attttttcag       600
     agtagctcct tattacctga tattgtatag tacacatttt atttttttga taaattgacc       660
     aaaaacaaaa tggccgccaa agacatttta tatggaaaat gtcggtcccc caaggaacat       720
     cggaatatct tcaataccag atcaccaatg attaatatta gcacggtttc ttaaactaga       780
     agagtttttt gagatcttgt gaaaaaatgg agcaaaaata tctagaaaca aaaaagttat       840
     cgcgatttga atattttttt tgctgttaaa aatgaagctg ccggtagagg ggttcaatat       900
     ctaatctaat caacaacccg acacagtgtt ttattttcag gacagcgaaa ttcatgtgcc       960
     atataatgtt ttaaacttga aattcaatat gaatagttgt actaagattt gcatggactc      1020
     ccccccccct ttcgtaccct ccccattttt aaagtatcga aaacgatgga atatttgata      1080
     taaatggttg aaataagcaa tttagatgat actacaatcc accagctatc tctccagaaa      1140
     tatagtggta tatgaacaac ccttcgacta taatgtggag ccgtccataa aatgcgtatt      1200
     cattttggag gggagcgggt ctgttcaaag gttacggttc gtataaatga aaatagaagt      1260
     ttaaagagtt gatcataaga gaagggggat aaaataccaa aggaaggata aacaatgctg      1320
     aaatggaagc tattagaaac ctgaccaacg ttttacaggt aaaataaatt tgtaatgaac      1380
     ataaaaaaca attgattatt tttttttgtt atcgaacttg ctttttcgag tgggtagcta      1440
     aaactcatct tttcaaacat tacctcacat tcggccgttg agttaattta tacctatact      1500
     tatataaata atgtacgacg tgatatgttt cttcattcaa gtgaaaaaca aagtgttaat      1560
     tgcaaggtga aaatggataa ctctaagtgt gatttggtta gaagtctctt gtgtaacatt      1620
     tgtggccttt acacgccaag acacaagcaa agaaatttca ctcaactggt aattgaaaag      1680
     tacaagcagt actttaaaag ggatccacaa atcaacgaga atttttctcc aaatcatctt      1740
     tgtgtttgct gccattcaat gctgctcaag aaagaacatc ggtcaatact tgcagtccct      1800
     atgatatggt cagttcctga tgtagctcat atgtattgtt attcctgtct aatgccctca      1860
     ttagtgggta gaaaatggtg ccaaaggagt gaaatccaat acccaaaaag gtcgttgtgc      1920
     actcttccag aaaaagtctt accatctgac gggatggaaa gtgaggagga ggaaacttgt      1980
     tgtcctgata accacgagga tgacttaccg gtaataaact cgacgcctac aatagcaaca      2040
     agttcatcat atcatccaca accgtctacg tcagcgggtc atgctgataa tcccgacttg      2100
     gttggtcaag ctagctttga tgatttaacg cgggatctaa atttgccttc aaacctttct      2160
     gaattgttag gatccagatt gagggagaag aaactgttaa aaacaggtac aagaaccgca      2220
     aataggtcga agttcgatga tttccgctca acgttcgatg aacacaacgg aataacatat      2280
     ttaaggaatc ttcacgggct gtttgaactt ttcgaggtcg atcacgatcc aactgaatgg      2340
     cgtcttttta ttgatgggag tgtatcgtct ttaaaagcct tgttactgca caatggaaat      2400
     gtttacccca gtattccagt ggcttacagt aacatacata aagaaaaata taacgtgctg      2460
     caagacattt tatatttgat taattaccct gcttttaaat ggaaaataat tgcagatttc      2520
     aagctgatca atattctcat gggactgaaa agcggtaatc caaagttccc atgttttatt      2580
     tgcctgtggg acaggaacaa tgatggtgat aaatattccg aatcagcatg gccactacgt      2640
     ccttcttttg ataagtaccc aggcaataaa ccagatttat acagtgctat attagaacca      2700
     ttagtcgccc cagaagacat ccttcatcca cctttgcaca ttaagcttgg acttgttaca      2760
     cagctcttca aaaaaattgt tcaacaaaac tctaaagtga aggagcatct gaaggatctt      2820
     ttcccaaaat taagtgatat gaaagttgag atgggcatat tcgatgggcc taaaattcga      2880
     gatatattca aaagcactga ttttgataat atattgacaa ttgatgaaaa atctgcttac      2940
     caaaatttga aacttgtttg tgctggtttt ctggggaaca atagagctaa caactacaaa      3000
     gaacttataa gtaacatgat gacttgctat aaaaagctag acattaatgt tacattgaaa      3060
     atgcattctt tgatttgtca ccttgcaaga tttccttcaa accttggaag tttttcagac      3120
     gagcagggcg agcgagcaca tcaagatttt aaggacatcg aacaacggtt taaagggaaa      3180
     aataacgtca atgcaatggg aacatattgt tggggattag ttcgacaaaa agatccagaa      3240
     gaacataaaa gacaatcacc aaccaaaact aaatatttcg ttgttcaata tatgtagaaa      3300
     aaaaggttaa taaaaatatc atgaaacata tattccattt tattattctt aatccgaaat      3360
     ccgaaaaatg taaataattg taacaaaagt ataaaaatga gatgtacaaa aaataaagca      3420
     gaagataatt tagctgcaaa taatctctac tgtactgtac ctcaaggaat agtagatctc      3480
     cgtgaacaat aaattcgttt tgaaaatgta tatatttttg atacttgtaa acattctcaa      3540
     attctcaata acaattgaaa ggcactcttt gtgaccaaat gaaatattgt cattgtaatg      3600
     cattgtgctg ttcatatatg agaaatgaag caaagatgat atagccatca caatagcatc      3660
     aaatttgata gaaataagta aaacgttcgt tagtctgtta gatcttaaat tcattatagt      3720
     aaacaagaaa caaaataacc tgcaagggat cctccataac cacgtggaaa tatttttggt      3780
     atttttcacc ccccttcccc ttgtgatcaa ctcttcaatt ttttattttt atttatatga      3840
     gccgttactt ctgaacagac cccctcccct aaaataaaca cgcaatttat agacggctcc      3900
     acgatatggt caaggggttg ttcataaact acgatatttc tgaagagata gctggtggat      3960
     tgtagtatta ctaaaatcgc ttatttcaac tatttatatc atatattcca tcatttgcga      4020
     tactttagaa atggggaagg tacgaaaaag gggaccccat gcaaatctta gtacaactat      4080
     tcatattgaa tttcaagttt aaaacataat atggcacatg aattccgctg tcccgaaaat      4140
     aaaacactgt gtcgggttgt tgattagatt agatattgaa cccctctacc ggcagcttca      4200
     tttttaacag caaaaaaaaa atattcaaat cgcgataact tttttgtttc tagatatttt      4260
     tgctccattt tttcacaaaa tctcaaaaag ctcttctagt ttaagaaacc gtgctaatat      4320
     taatcattgg tgatctggta ttgaagatat tccgatgttc cttgggggac cgacattttc      4380
     catataaaat gtctttggcg gccattttgt ttttggtcaa tttatcaaaa aaataaaatg      4440
     tgtactatac aatatcaggt aataaggagc tactctgaaa aaatcataca aatcggttca      4500
     gttttcttgg agaaatctga aaattacgat ataaggtttt aaggagtttt caagatcttt      4560
     aattgtctag gatagtacca gaaacataaa tgctcattac tcaaagacgg ctgcaccaaa      4620
     ttgcttcatt ttttcacagc atattcgcct taatgtattc cgaggagtga atatccgaat      4680
     gcgataaaaa atctgtagcc tgagatattt acgtgggtta tggctacgcg ccggtcccca      4740
     aggaattttg gaatatctcc ggatccagat gaccaattat caatattgac acatattcga      4800
     aaaccagaag agttttttga gaacttgtga aagaatggtg caaaaatatc gagaaacaaa      4860
     aaagatatcg tgatttgaat attttttagc ggtaaaaaat gaagctgtcg gtagaggggt      4920
     tcaataaaaa atgcaaaatg ttcaagtata ttttaaaaat gacctggggc agacacgaac      4980
     attctgtaaa cgccattatt tttgtctttt ttcatacttt cggggtgtct cgtctctgtg      5040
     cattcagatc gacttttttt gtcgaactgt g                                     5071
//
ID   Chapaev3-1_DA repbase;    DNA;    INV; 3126 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-1_DA is an autonomous DNA transposon - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-1_DA.
XX
NM   Chapaev3-1_DA.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3126
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 44-44 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-1_DA belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-1_DA is a very young family of fruit fly Chapaev3
CC   transposons: genomic copies of Chapae3-1_DA elements are ~99.5%
CC   identical to their consensus sequence, which was derived from
CC   multiple alignment of three Chapaev3-1_DA elements. Chapaev3-1_DA
CC   contains 12-bp TIRs, ~550-bp subterminal inverted repeats, and
CC   encodes a 554-aa transposase (2 exons).
CC   This sequence was derived from sequence data generated by
CC   Agencourt Bioscience Corporation.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(910..2323,2393..2640)
FT                 /product="Chapaev3-1_DAp"
FT                 /note="transposase."
FT                 /translation="MCKHSLYKFCFVCGSFILKKTSMKKLTKNIILAYKHY
FT                 FGFDAKFIDKPWTPKSVCAACFCKLIQFGNGKKVYLPFGKPVEWRNPIDHV
FT                 TDCYFCLTKVQGGKHFKVIYPDVQSVTKAAPHSSLYPKREPPAPKTTASDP
FT                 LEELCSDRSSESDLENKDYEPKLMNQSELNDLCRDLNLSKNKSELLASRLQ
FT                 EKKYLHPKTGVTYYRNRGKPFEQFFSKTEEFCFCNNVNALFSAFGEKHNAN
FT                 EWRLFIDGSKYSVKAVLLHQGNKKPSIPVGHSTIAKETYGTMKQLLELIDY
FT                 NSYKWKICCDLKVVAILTGLQGGYTKYCCFLCLWDSRANTKHYSSHDWPRR
FT                 EQFVVGNNNVVAKPLVDIKNVIIPPLHVKLGLMKNFVRALAKDPESKGLKY
FT                 LRTKFPKLSSEKIKAGIFVGPQIRTLFKDENFMQSLNHIEAGAWAAFRDVV
FT                 EGFLGNKKSHNARELIHKMMEKFQEIGARMSLKMHFLHNHFDAFPENLGAE
FT                 SDEQGERFHQDLSAIEKRYEGFWDKGMMGDYCWMQVREEKIDNKRKNLSDK
FT                 CFFRPNL"
XX
SQ   Sequence 3126 BP; 1070 A; 485 C; 556 G; 1015 T; 0 other;
     cactagttta caaatttaaa tgtaatcgag tgaaccttaa aattgatgat tgttttatag        60
     taatttgggg tcggagaaca cgaaaatgac atccgtttat ttttcttaag aaccgttttt       120
     gagatatttt tgaaaatcgt gtttttgagg tcctttttca gttttttggt aatatctcat       180
     gaaaaaaact gtttacaaac aaaaaaagga tattgattga caggtattga agtaacgttt       240
     acgtggatat ataatatgtg cagattgaat caaatctctg taatgcacaa gcgaacaaag       300
     tacaaaaata gtgtcatttt cgaccaattt tgaaaatttc aatttttcag atcgattttt       360
     gccaaaaaaa acaatttttt ttctaaggtt tcaatatttg agggaaaaga tttattattt       420
     accaacaatt taagcctaag attatccaaa ttgagtaaga agtttaaaag ttatagtaat       480
     attaacattt tgacacttca taaattaggt cgaaaaaaac atttatcact caaatttttt       540
     cgtttgttat caattttctc ttcacgcact tgcatcttgc aaacatttta tctgaaatcc       600
     aagacgactg ttcttcttgt tctgtttaca gtttactttt gatgggtcta tgttttgagg       660
     ggggatatga tgggagaagc actaaatgtg gggacatatt ttactgattg gaccaccttg       720
     ttgttattta atcatgaatt tttcaaagta agacagaact gttgagtaaa tagaaataca       780
     acagtaaata caaagaaata caaaataaag ttgtgaatat actgatgaac ataccgattc       840
     gttcgtatta gcgagtgttt agttgataga ctgagctagt gtatacttag ttcaaaaact       900
     taattcaata tgtgcaaaca ttcattatat aagttttgtt ttgtctgcgg ttccttcata       960
     ttaaaaaaaa cttccatgaa aaagttaacc aaaaacatta ttttggctta taaacattac      1020
     tttggatttg atgctaaatt tatagacaag ccatggactc ctaagtcagt ctgtgccgcg      1080
     tgtttttgta agttaattca atttggtaat ggcaagaagg tgtatttgcc ctttggaaaa      1140
     cctgtagagt ggaggaatcc gattgaccat gtgactgatt gttacttctg tttaacgaaa      1200
     gtccagggag gaaaacattt taaagttatt tatcccgacg tacaatcagt tacaaaagcc      1260
     gcaccacact cttctctgta ccctaaacga gagcctccag cacctaaaac aacagcaagt      1320
     gatcctctgg aagaattgtg ttcagatcgc agtagcgaga gcgatcttga aaacaaagat      1380
     tacgaaccaa agttaatgaa tcagagtgaa cttaatgatt tatgccgtga tcttaacctg      1440
     tccaagaata aatctgaact gcttgcatcc cgcttacaag agaagaaata tttacaccca      1500
     aaaacaggag tcacgtatta tcgtaatcgc ggaaaacctt ttgaacaatt tttttcgaaa      1560
     actgaagaat tttgcttttg caataatgta aatgcgttat tttctgcatt cggggagaaa      1620
     cacaatgcta acgagtggcg tttgtttatc gatggcagca aatatagtgt taaggctgta      1680
     ttactccatc aaggtaacaa aaaaccgtcc attccggtcg gccattcaac tattgcgaaa      1740
     gaaacctacg gtactatgaa acaacttctt gaactaatag attataactc ttacaagtgg      1800
     aagatttgtt gtgacctgaa ggttgtcgcg atactcactg gtttgcaagg cggttatact      1860
     aaatactgct gttttttatg tctctgggat agcagggcaa acacaaaaca ttactcctca      1920
     cacgattggc cacgacgtga acaatttgtg gtaggaaata acaatgttgt tgcaaaacca      1980
     cttgttgata taaaaaatgt gattatacca ccattgcatg tgaaacttgg actcatgaaa      2040
     aattttgtca gagctttggc taaagatcca gaaagcaagg gcttgaagta tttgaggacc      2100
     aagtttccga aattatcatc cgaaaaaatt aaagcgggaa tatttgttgg tccacaaata      2160
     cggactttat ttaaagatga aaatttcatg caatctttaa accacatcga ggcaggagca      2220
     tgggcagcat ttcgcgacgt tgttgaaggt ttcttgggaa acaaaaagag tcacaacgct      2280
     cgtgaattaa tacataaaat gatggaaaaa tttcaagaaa tcggtgagga caatatataa      2340
     atatataatt ataaaatgtt tatgctgaaa caactgctct ttttaatttc aggtgcacgc      2400
     atgtccctga aaatgcattt tttgcataat cattttgatg cattccctga aaatttagga      2460
     gctgaaagcg acgaacaagg cgaaagattt catcaggatc tttcagctat tgaaaaacgt      2520
     tatgagggtt tttgggacaa gggtatgatg ggtgattact gctggatgca agtgcgtgaa      2580
     gagaaaattg ataacaaacg aaaaaatttg agtgataaat gtttttttcg acctaattta      2640
     tgaagtgtca aaatgttaat attactataa cttttaaact tcttactcaa tttggataat      2700
     cttaggctta aattgttggt aaataataaa tcttttccct caaatattga aaccttagaa      2760
     aaaaaattgt tttttttggc aaaaatcgat ctgaaaaatt gaaattttca aaattggtcg      2820
     aaaatgacac tatttttgta ctttgttcgc ttgtgcatta cagagatttg attcaatctg      2880
     cacatattat atatccacgt aaacgttact tcaatacctg tcaatcaata tccttttttt      2940
     gtttgtaaac agtttttttc atgagatatt accaaaaaac tgaaaaagga cctcaaaaac      3000
     acgattttca aaaatatctc aaaaacggtt cttaagaaaa ataaacggat gtcattttcg      3060
     tgttctccga ccccaaatta ctataaaaaa cactttttta aggttcattt ttggtgtaaa      3120
     ctagtg                                                                 3126
//
ID   Chapaev3-1_DW repbase;    DNA;    INV; 3148 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-1_DW is an autonomous DNA transposon - imperfect
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-1_DW.
XX
NM   Chapaev3-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-3148
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 45-45 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-1_DW belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-1_DW is a relatively young family of fruit fly Chapaev3
CC   transposons: genomic copies of Chapae3-1_DW elements are ~95%
CC   identical to their consensus sequence, which was derived from
CC   multiple alignment of a few Chapaev3-1_DW elements damaged by
CC   multiple deletions. The transposase-encoding region is corrupted
CC   by mutations accumulated in genomic copies. Chapaev3-1_DW
CC   contains 12-bp TIRs and ~550-bp subterminal inverted repeats. The
CC   genome contains numerous non-autonomous derivates of
CC   Chapaev3-1_DW.
CC   This sequence was derived from sequence data generated by J.
CC   Craig Venter Institute.
XX
SQ   Sequence 3148 BP; 1082 A; 522 C; 582 G; 961 T; 1 other;
     cactgtgata gtcgaaaaaa aagacatggc aaaattcgat ggtttcaccc tatttcgggt        60
     cctgcgaatc gaactgcatc attagttttt taagttatca cgatggtttc atacaaaatt       120
     ttttcgggaa gtttttcatc aaagttgccg ttttttcgaa aagggtgttt ttttcatttg       180
     cttctaactt ctaaaatatt aatttttttt acaaactttc ttcagcaacg tttcttagaa       240
     ttaaaagagc tacaaatgtt gggaagacat ctagcctcta agtccgtccg ttcccgagct       300
     ttgggacaaa atgtaaaaaa aatcgaatct tgacccaatt ttttttatgt tttctttctc       360
     gcattttgct aatattgaaa attttccatt cgaatcatga tcataatatg agaatttatt       420
     atgctcaatg gcagcagaag agaaaccaga cctatctaat ttacgattta taatataacc       480
     atttaatcaa attgaatttt tttcagatat gttaacaaaa ttaaactaac tgtatttgtt       540
     tagtttttga aaaatattta tacagtcggt atcataactg catattattt atttgacaac       600
     aatattagtc aagggcgtag cccggtttga gcacgggggg tgggggaggg gtgcatttaa       660
     atcaatttac ttaaaggtga agttgataaa actttttata ggttttcaaa tcaaaatgta       720
     ttaaaaaagt taagttagga aaacaaagtg ttaccccgca cgaattaaaa tactggttac       780
     gcccttgata taataaatac ttatacccca tgagctttaa ctactcaagc cttttaccgc       840
     tattctactg atatcggtgg gtacttatgc gagcaccgtt aagaaattac ctctactgat       900
     catgaaagca tagatttaaa tcataatttt gacttcaacg ttgcgcttag aagtgttctg       960
     cattgagctt aaattaaaat gaacaaatgt ccgacaagtt ttgctgtatt ttgctacgta      1020
     tgtggaaaat ttacgagccc tcgcagtaga cgcaaaatat ctcctggaac tgcagcaatt      1080
     tatgaggagt actttaattt accagtgatt agagacgtaa attgggcacc aagcaatatc      1140
     tgcacacaat gcaataacaa tttgcagaat tcgtcaaaaa ggttgcgtgc aaaaatgggt      1200
     ttcggcattc caatgatttg gatagatcca caaggtcatc atacgggtaa ctgctatgca      1260
     tgccagaata aactcgcaaa actaaagaag agttctatgc tttataaaag tgttcaatct      1320
     gcacagttgc cggtacctca ctcggagaat attccaattc ctagacgtca aagcccaaca      1380
     gaaagatata ttccgccaac atttttcacc gaacctgaag agctactatc aatgtatgag      1440
     ccatcgcaaa tcgataaacc ttgccaacat gtcgagatat cccaagctcg tttaaatacg      1500
     atggtaaggc aactgaaatt gtcgcaaagg caagcaatct gtttagcaca tcatttacga      1560
     tctgttaaca ttttgtctaa ggatgtgaaa gtgtacggat atcggaagag acaagaagag      1620
     cttttggact ttttcgaaat aaacggcaat aatacgtttg catactgcaa aaatatcgtt      1680
     gggctaatgg aacatatgaa ttgcgagtac aaaccagagg aatggcgatt gtttattgat      1740
     gcatccaaaa atagtttgaa ggcagtactg ctatatgtgg ataacacgaa aaatccagtt      1800
     cccattgctt ttagttccaa cacgaaggaa accaacgatt caatgaaact aattttggat      1860
     tgtgttcaat ataaaaagca tcaatggaag atatgtgctg acctaaaagt tgttgctcta      1920
     ctcactggct tgcaagcggg ttatacaaaa aacatgtgct tcatttatca ttgggatacc      1980
     agatatcgcg gtaaccaata tgataagcga gttggaaggc tcggacagag tacaatataa      2040
     atgttgcaaa tgtaatccat accccactga taccagctaa taaaatttta ctgccaccac      2100
     tgcacataaa tttgggaatt gtgaatcggg atggtaaagc gtttcaaagc ttgacacaaa      2160
     tagttccaag attgagcgtg gcaaaaataa aatatgacca aaaatttcat tctaggtgta      2220
     ttaaatggtc cagatataag aaagctaata aaaaatagtg aattttgcga gcttctaaga      2280
     ccaaaagaaa agatggcgtg gaactgcgtt aaagctgctt gggagtgcgc cgtattgaag      2340
     gctggcaagg gaatgtggat caaatgttag agtcctttaa agacatgggt gtaaatatgt      2400
     ctttaaagat tcattttctc cactaccaca aggaccattt cgacggcaag ttccgacaga      2460
     atctgatgaa cacggagaac gatttcatca ggttgctgca tcactagaac attggtatag      2520
     cggaaaaagg cttgactcgt tgctcgcaga tttatgttgg aacttaataa atgaagctta      2580
     tggtatataa tgcaaatatt tttgtcaaat aaaaaatatg cagctattat accgactgta      2640
     taattattct tcaaaaacta aacaaataca gttagtttaa ttttgttaam atatctagga      2700
     aaaattcaat ttaattatat ggttatattt tataaatcgt aaattagata ggtctggtgt      2760
     ttcttctgct gtcattgagc ataataaatt ctcatattat gatcatgatt cgaatggaaa      2820
     attttcaata ttagcaaaat gtaggaaaac ataaaaaaaa ccggacggat ttagaggcta      2880
     gatgtgttcc caacatttgt agctcttatt ctaagaaacg ttgcttaaga aagtttgtaa      2940
     aaaaaataat attttagaag ttagaagcaa atgaaaaaaa cacccttttc gaaaaaatgg      3000
     caactttgat gaaaaacttc cggaaaaaat tttgtatgaa accatcgtga taacttaaaa      3060
     aactaatgat gcagttcgat tcgcaggacc cgaaataggg tgaaaccatc gaattttgcc      3120
     atgtcttttt ttttcgacta tcacagtg                                         3148
//
ID   Chapaev3-1_NVi repbase;    DNA;    INV; 3561 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-1_NVi is an autonomous DNA transposon - imperfect
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-1_NVi.
XX
NM   Chapaev3-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3561
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 59-59 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-1_NVi belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-1_NVi is a young family of wasp Chapaev3 transposons:
CC   genomic copies of Chapae3-1_NVi elements are ~98% identical to
CC   their consensus sequence, which was derived from multiple
CC   alignment of two Chapaev3-1_NVi elements. The
CC   transposase-encoding region is corrupted by mutations accumulated
CC   in the genomic copies. Chapaev3-1_NVi contains 14-bp TIRs and
CC   imperfect ~70-bp subterminal inverted repeats.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
SQ   Sequence 3561 BP; 1160 A; 645 C; 725 G; 1031 T; 0 other;
     cacaggccca taaaaaaaat gaacttgtat gtccatcgac aaaacccatg tactcctatg        60
     tatttttgcg cgctgagtcc gaatctggca ttcgtttaac ctcagcacgt tgggttcaag       120
     ggcatttgaa gatcaaattg cagaaatcag caataaccaa tacaagacat ctatctgtta       180
     agttttgggg ggcgctgaat ccaaatccgg tatttgtttt tctccatgag gtaagtttga       240
     aggtcagttc aaggtcaaaa ctgtgtactc taggaaaaat gaatttttga cagcagagtc       300
     tgaaagagcg ggaaatttta cgtccagata ttcatttttt tttaatataa ccctcaaggt       360
     catatgaagg tcacttaatc ttgttggatg gtggattcgt ataacaatta gataatggat       420
     tttcatgggg caaactacta tgtcgttatg ttttcagggt cgccgaatcc aaatccggtg       480
     tccgtttgtc tccatcaggc cgaattggag gtcgtttgaa ggtcaaatcc tcgacaatta       540
     gtgaaatcga gtcaagttat catcctgaca tattttttgg gccgctgaat ccaaatataa       600
     agaccgctta gtacctcagg gtcaaagtca aggtcatccc aggtcaaata tacatttttt       660
     tttactaaaa aaggaaattt tgaccacaga ttcaggaaaa atggacattt ttacatctag       720
     ctgtgatctt tacttatttt ttttatcaca ctcccgaaat aatcgtgtgc cgcatcccag       780
     ggtacctcca cgtggtgacg gcggaaaacg gttttttttc gctttttgtt ttccagcaaa       840
     accctggggt gaaggcatga tgccgtcatg gtcggcacac gaagaggtac gatgcagggt       900
     ttctgatgcc cagtatcggc gattggtcag gatgagcaag caggtccgca atcgtcgtca       960
     tcatgcgact gcagctctac agtggttgga aacttggtct ctgtagagta caacaataca      1020
     agaatacgct ctaattctta tagttgtaag caaaaagtga attccttttg ctatgtatgt      1080
     ggcaaatact ttttgaaaaa gttgaatctt cggcaattta cagatgattt gaaattagta      1140
     tacgatgagt gtttcggttg taaagtcact gatagtgagc aagattggct gccacaattg      1200
     atatgtaata gctgtaggct gatgtttagc cggtacaaaa agagcaaaac ttcattaaaa      1260
     tttgtcaaac ctatggtttg gagtgagcca gaaaatgtag aaaattgtta tttttgtatg      1320
     acaaaaacta aaggttttaa ctcatctaat gtccacaaaa ttgtgtacgc gagtgtgtct      1380
     agcgtggtga agccgtttat agctccaaca gaagaaagag atacagatgt agaaagtgac      1440
     ctttcttttg cacttactga attagaggtt tctagttcag atgaagccga gagtgaaaga      1500
     gaagaaacgg acgagagtaa tgacgagtac ttgccatctg gatcacaaac aaagataaaa      1560
     ggagaatttg atcagaaaga acttaatgac ctagttagag agttaggctt atcaaaggag      1620
     ggatcagagt cacttgcttc gaggttgaag gaaaaaaatt tactgacgaa aggtactaaa      1680
     tgttcttact atcgaaatag agaaaaagac ttcagaaaat atttctctgc ggagaatgat      1740
     ctcgtatatt gcaacaatgt taagggtctg atggatgaat ttaagaagga tgtttataaa      1800
     tctgaggaat ggagattatt tctggattct tctaagcgaa gcctgaaggc tgtactatta      1860
     cataacacta ataaatattc tccaatacct gtggcccatt cggttaccct gaaagaagat      1920
     tacaaaaata ttgagttgat attaaataaa atacagtaca aggaacacaa ctggctaatc      1980
     tctggtgatc tcaagattct taccatcatg ctaggtcagc aatcaggctt tacaaagttt      2040
     ccatatttct tatgcatgtg ggatagcagg actcgtaaga atcattatgt aaaagcagaa      2100
     tggcctgcta gatcaacgtt cgaaccccgt aaggataaca tcattaacaa gccattagta      2160
     gagccatcca aggtccttct tcctcctctc catattaaac ttggtttaat aaaacaattc      2220
     gttaaagcgt tgaataaaga aggtcaatgt ttctcgtacc tgggaacaaa atttgcagga      2280
     gtaactgacg ctaaattgaa agtaggtata tttgacgatc cccaaatccg cacatagtta      2340
     aaggataaag cattcataga caagatggac gataaagaaa aagcagcatg gattagcttc      2400
     aaagatgtag tggaaaactt attagagaat cacaagagcg agaactacaa aaaactagtt      2460
     gaagacctat ttaaaaatta caatagttta ggttgcttga tgaattacaa gctacacttt      2520
     cttcattcac acttagacta cttttcacaa aatcttggag attatagcga agaacaaggg      2580
     gaacggtttc atcaagatat taaagtaatg gaacagcgat accagggccg gtgggacata      2640
     aatatgatag cggacttttg ttggacattg aaaagagaac atattatcca cggaaagaaa      2700
     agaaagcgga atcccctaca ccgatcattc gaagacaaaa gaacaagaaa aaaaagaaaa      2760
     tcatgagttt tgtaatacat gatacccatg tctccgtgtg tggctgtttg tcatacgacg      2820
     gttggtcagt ctcactattt ttgacaaata ctaatttatt gcacatcatt cattaagatg      2880
     taaaactttc catttttcct gaatctgtgg tcaaaatttc cttttttagt aaaaaaaatg      2940
     tatatttggc cttgggatga ccttgacttt gaccccgagg tactaagcgg tctttatatt      3000
     tggattcagc ggcccaaaaa atatgttaga atgataactt gactcaattt cactaattgt      3060
     cgagggacct tcaaacgacc tccaattcgg cctgatggag acaaacggac accggatttg      3120
     gattcggcga ccccgaaaac ataactatat agtagtttgc cgcatgaaaa cccattatct      3180
     tattgtcata cgaatcctcc atccaacaag attaagtgac cttcatatga ccttgtggat      3240
     tatattaaat aaaaattgaa aatctatctg gacgtaaaat ttcccgctct ttcagaatct      3300
     gcagtcaaaa attcattctt cctagagtac acagctttga ccttgaactg accttcaaac      3360
     ttacctcatg gagaaaaaca aataccggat ttggattcaa cgccccccaa aacttaacag      3420
     atagatgtct tgtattggtt attgctgatt tttgcaatta gaccttcaaa tgcccttgaa      3480
     cccgacgtgc tgaggttaaa cgaatgccag attcggactc agcgcgctgg acatacaaat      3540
     tcattttttt tgtggcctgt g                                                3561
//
ID   Chapaev3-2_AA repbase;    DNA;    INV; 3850 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-2_AA is an autonomous DNA transposon - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-2_AA.
XX
NM   Chapaev3-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3850
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 51-51 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-2_AA belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-2_AA is a very young family of mosquito Chapaev3
CC   transposons: genomic copies of Chapae3-2_AA elements are ~99.4%
CC   identical to their consensus sequence, which was derived from
CC   multiple alignment of 16 Chapaev3-2_AA elements. Chapaev3-2_AA
CC   contains imperfect 520-bp terminal inverted repeats and encodes a
CC   551-aa transposase (3 exons).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1249..1475,1554..2746)
FT                 /product="Chapaev3-2_AAp"
FT                 /note="transposase."
FT                 /translation="MCAAKREFKCKNDPQKFCFVCGNYIFTTPVNFTSSLQ
FT                 TAYRLYFKTDPKNLDKTWTPNVVCSSCKTCLARWMSGESRHLSFVVPTIWR
FT                 QPFCHAADCYFCLTKVMQHGRHKAVEYPQVQSMTKPIPHEDSSPYPVCPKR
FT                 KREPSVDDSDEPPFDESDVEYERKPMLFTQAELNDLIRDLDLSKEKSELLA
FT                 SRLMERNFLSADTKVTSYRKRHEKFGKYFSKKDSACFCHDIRGLFEEFGEP
FT                 YDPSEWRLFIDSSKLSLKAVLLHQGNNKPSIPLVHAVNMKESYESMAFILD
FT                 LICYNQHNWKICSDLKVVAMLTGLQQGYTKFMCFLCKWDSRARKQHYVREN
FT                 WPERKSFTIGQENVRCHPLVAKEQIILPPLHIKLGLFKNFVKALNKEGPAF
FT                 GYLKSIFPNLSDAKIKEGVFVGPQIKKMLNDEDFYTVLNNHEAEAWKSFQR
FT                 VVAEYLGNTRSPDYEEIVADLLKNYKRMX"
XX
SQ   Sequence 3850 BP; 1292 A; 627 C; 698 G; 1233 T; 0 other;
     cactagttta caaataaaaa tgaaagtcat gaactttaat agctgagctt cattttcaat        60
     gtaaaatcgt acgctgaatc caaaaaaaat gtcaaaaaaa ttcacagtag aaccgttttt       120
     gagatacgct caatatttga tttttttggt ttttcaaaaa agtacatttg ctaaaattga       180
     tgtatctccg gatttagagc accaaatcta aacttttttt tagcaaaata aagctaatta       240
     aatgtgcttt ctaccgtctg aacatcactt tgttgtgcaa attacggttt tctagatatt       300
     tatggcataa tcaaattttt tcgatatttt tgagtaaaat ttaaccaaat tttcaacttt       360
     tagctaagtt ttaagcacga tgctgatgtt ttaaaattcg tttatcatgt tgaactcaag       420
     gtatgtaaaa aaccaaaaga aaaaagtacc taatgactga aatcggttga aaattgaaga       480
     tgttatggca ttttttgtag aacacttgaa ttttgaagtt ttgacctttt aaaacaacaa       540
     gacgaaatcc atataaattt cactaaatcc tttcactttg aatgactctt agtacagatt       600
     ccatgctttg ttaaccgttt tatcaattat taattttgga tcacgactaa ttaatgaaaa       660
     gggcgtatgt aaaagcagaa tttatgtgtt tgcgtatata ttaaaaaagg ccagttttac       720
     taacatggag tcttgatata tttcaagcta ataatgatga tgatgaactt tttatgattc       780
     aatattaaat ccagcaaaca aactacaatg aatacgtgta taaaataagg ccatgggctc       840
     atttgagaac gtgaaagatg tatccgcctt ggctacatac tgtatgcaac ttaaaagaaa       900
     aatttccgaa gccatccgtg ttcaattatg gcatacgaaa gttcaggcta ctgcgatgtc       960
     aagctttctt cagtgttgct ggctcaacgg ctgaatgatc atggcgatta atgtgataca      1020
     agaaatataa attcctgact gattcctgaa atgtttggtc ctttaactgt tttgatgtgg      1080
     ttataactat ttttgatgtg gtttcaagtt taatgataag tttatgctgc ttgtctgttt      1140
     ggcgtttgaa cgttataact ttgttatgac aaaatgattt tggcagcact ttcgtcgcag      1200
     ggaaaacatt gttgacaggt agtactgttt gttgaacata gtgaaacaat gtgtgcggca      1260
     aagcgtgaat ttaagtgcaa aaatgatccg caaaaatttt gtttcgtctg cggaaactac      1320
     atttttacga caccggtaaa ttttactagt tcattgcaaa ctgcatatcg gctttatttc      1380
     aaaactgatc ccaaaaacct cgacaaaacg tggactccaa acgttgtgtg tagttcgtgc      1440
     aaaacatgct tggctagatg gatgtctgga gaaaggtaat tatttaattt tctacattca      1500
     aatgactaac aagtgctatt tactaactaa ctaactaaca aatcttgtac cagccgccat      1560
     ttgtcctttg ttgtaccgac aatatggcgc caaccatttt gtcatgcagc ggattgttat      1620
     ttctgcttaa ccaaagtcat gcaacacgga cgtcacaaag cagttgaata tccacaagtt      1680
     caatcaatga caaaaccgat tccacatgaa gattcatctc cttatcctgt ttgtccaaag      1740
     cgaaaacgag agccttcagt ggatgacagt gacgaaccac cctttgatga aagcgacgtg      1800
     gaatacgaaa gaaagccgat gctgtttaca caagcggaac tcaatgactt gataagggac      1860
     ttggacttat caaaagaaaa atcagaattg ttggcatcgc gcttgatgga acgaaacttt      1920
     ctttctgctg atacaaaagt tacttcctac agaaagcgtc atgaaaaatt tggaaaatat      1980
     ttttccaaaa aagacagtgc ttgcttttgc catgacataa gaggcttgtt tgaagaattc      2040
     ggtgaaccat atgatccttc tgaatggcgt ttgtttatcg acagtagtaa attaagttta      2100
     aaagctgttc tgctgcatca agggaacaat aagccttcga ttccgctagt tcatgccgtg      2160
     aacatgaagg aatcatacga atcgatggct tttatacttg acctgatatg ctacaaccaa      2220
     cataattgga aaatatgctc agatctcaaa gttgttgcaa tgttgactgg cttgcaacag      2280
     ggatatacta agttcatgtg ttttctttgc aaatgggata gccgagcacg taaacaacat      2340
     tacgttcggg aaaattggcc cgaacgaaag tcttttacaa ttggtcaaga gaatgtaagg      2400
     tgccatcctc tcgtagcgaa ggaacagata atactcccac cactgcacat aaagcttggg      2460
     ttgttcaaga attttgtaaa ggcgcttaac aaggaaggac cagctttcgg atacctgaaa      2520
     tccatttttc caaacttgtc ggatgccaag attaaggaag gtgtgttcgt tggtcctcaa      2580
     attaaaaaaa tgttaaacga tgaagatttc tacaccgtat tgaacaatca tgaagccgaa      2640
     gcatggaaat cgttccagcg tgtagttgcg gagtatttgg ggaacaccag gagcccagac      2700
     tatgaagaaa ttgtagccga tttactcaaa aactacaaga gaatgggtaa attttaaagt      2760
     tttgttttat ttactttcag ctgtaaaatt ttacatttta ttttaacagg tgtgaatatg      2820
     tctctgaaga tacatttcct acactcgcat ttgaactttt tccctgaaaa cctcggcgac      2880
     gaaagcgatg agcacgggga acgttttcat cagcaaatga aaataatgga acgtcgttat      2940
     caaggatttt gggatgaagc gatgatgggc gattattgtt ggtttctctt tcgagaaaca      3000
     aattgcaagc ataacagacg gagtgattca aacaaccatt tttaaacata tattttttac      3060
     atgtgaattt atagcttaat ttaaggaagc tttgaaatat atgaaatgaa ctgattgttg      3120
     tagagataat aagtagagat aaaacttatg ttctgagtga agtagaagct ctgttaatac      3180
     acacgccctt tttacagatt agtcgtgatc taaaattatg gattgataac acaacattaa      3240
     atcttaacta agacttatta actgttgaaa gtttaagcaa atctaaatga aaatgcatta      3300
     aattttcttc atgttgttga gatcgcttga aaatcgtaaa aacttcaaaa ttcaagtgtt      3360
     ctacaaaaaa tgccataaca tcttcaattt tcaaccgatt tcagtcatta ggtacttttt      3420
     tcttttggtt ttttacatac cttgagttca acatgataaa cgaattttaa aacatcagca      3480
     tcgtgcttaa aacttagcta aaagttgaaa atttggttaa attttactca aaaatatcga      3540
     aaaaatttga ttatgccata aatatctaga aaaccgtaat ttgcacaaca aagtgatgtt      3600
     cagacggtag aaagcacatt taattagctt tattttgcta aaaaaaagtt tagatttggt      3660
     gctctaaatc cggagataca tcaattttag caaatgtact tttttgaaaa accaaaaaaa      3720
     tcaaatattg agcgtatctc aaaaacggtt ctactgtgaa tttttttgac attttttttg      3780
     gattcagcgt acgattttac attgaaaatg gagctcagct tactaagttc agaaatgttg      3840
     taaactagtg                                                             3850
//
ID   Chapaev3-2_NVi repbase;    DNA;    INV; 2226 BP.
XX
AC   .
XX
DT   12-MAY-2009 (Rel. 14.05, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-2_NVi is an autonomous DNA transposon - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-2_NVi.
XX
NM   Chapaev3-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2226
RA   Bao W. and Jurka J.;
RT   "Chapaev transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 932-932 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           622..1818
FT                 /product="Chapaev3-2_NVi_1p"
FT                 /translation="LNDLVRDLGLPKDGAEYLAAALKRKHLLANGTTAYFY
FT                 RNREKKFRKFFTNDTENSLVYCSDVKGLVHELKPNVYEDEEWRLFIDSSKR
FT                 SLKAVLLHNGNTFAPIPIAHSTKLKETYENLKIVLDKIKYSEHQWQVCGDL
FT                 KIATLLLGQQSGYTKNPCFLCLWDSRDRINHYVKKEWEKRTNFIPGSKNIL
FT                 HKPLIEPSKYLLPPLHIKLGLMKQYVKALDKEKDCFRYLQEKFPAISDAKL
FT                 KEGIFDGPQIRRLFEDANFITSMDNTEEAAWQSLKNVSQNFLGNTKSEDYE
FT                 NIVDELLENYKNLGCLMNLKLHFLHSHLDYFPENLGDYSEEQGERFHQDIS
FT                 EMENRYQGRWDVNMMADFCWMLQRDEKTNNKKRNRNPLHRSFEEKRVRYKR
FT                 RRTV*"
XX
SQ   Sequence 2226 BP; 776 A; 356 C; 416 G; 676 T; 2 other;
     acaccggcac acaaagaaaa aaaagtgggg agtacttttg actagaccca tatatcccta        60
     tgtattttga cgcgctgaat ccgaattcgg tgtyygtttt gcccgtacac ccccaaaatt       120
     ttgagtaaat agcgaaaaac ccgtgaaaaa ttgctgaaaa tcgcatttgt agacgttggt       180
     aaatgttaga aagttttctt gtgagtgtat tatacatgat tttagttcat tttaatgtgc       240
     ctaatacgag ttaggtgttc gttttgcttt taactacaga ttttgcataa actgtacata       300
     tgcgactgtg attgcataaa gaaaatgata aatttttttc atttattttt cattgagtgc       360
     ttatgataga gatggaaaaa tatgtaagaa atgctgctct tacactgttc ttcttctttt       420
     gtaacgtact cttttttctt caaacgatct atgtaatgga tttctatttc tctttttgtt       480
     gttcgttttt tcgtctctat gtaacatcag caaaaatcag taatggaagt agatgaatcc       540
     tatgataaag aaagttctga ggatgatgaa ttcctgccag ctggtgagag gatagctcct       600
     caaaccttta ctcaaaaata attgaatgat cttgtaagag atttaggttt acctaaagat       660
     ggagctgaat atttagcggc agcacttaag aggaaacact tgttggcaaa tggaacaact       720
     gcttactttt atcgtaatag agagaagaag tttaggaaat tttttacaaa tgatacagaa       780
     aattcactgg tatattgttc agatgttaaa ggattggtgc atgaattaaa accaaatgta       840
     tatgaagatg aagaatggag actctttatt gattcgtcaa aacgaagtct gaaagccgtt       900
     cttctccata atggtaatac atttgcacca attccaatag cccactcaac aaagttaaaa       960
     gagacttacg aaaacttaaa gatagtattg gataagataa agtactcaga acaccaatgg      1020
     caagtttgtg gtgatctgaa aattgctact ctgcttctag gccaacaatc tggttatacc      1080
     aaaaatccct gctttttgtg tttatgggat agtagagaca ggataaatca ctatgtcaag      1140
     aaagaatggg aaaagagaac taactttatt ccaggatcga agaacattct acacaaacca      1200
     ttgatagaac cttcaaaata tctgctacca ccactgcata ttaaactagg acttatgaag      1260
     cagtatgtta aagctttgga taaagagaaa gactgttttc ggtacttgca agaaaagttt      1320
     cccgcaataa gtgatgctaa gttgaaagag ggtatttttg atggtccaca aattcgccga      1380
     ctttttgaag atgccaattt tattacaagc atggacaaca ctgaagaagc agcttggcaa      1440
     agtttgaaaa atgtttctca aaacttttta ggaaatacga aaagtgagga ttacgagaat      1500
     atagttgacg agttactaga aaattacaaa aacttgggtt gtttaatgaa cttaaaattg      1560
     cacttcttac actctcacct cgactacttt cctgaaaatc taggagatta cagtgaagaa      1620
     caaggtgaac gattccatca agacataagt gaaatggaga atcggtatca gggaagatgg      1680
     gatgtcaaca tgatggcgga tttttgctgg atgttacaga gagacgaaaa aacgaacaac      1740
     aaaaagagaa atagaaatcc attacataga tcgtttgaag aaaaaagagt acgttacaaa      1800
     agaagaagaa cagtgtaaga gcagcatttc ttacatattt ttccatctct atcataagca      1860
     ctcaatgaaa aataaatgaa aaaaatttat cattttcttt atgcaatcac agtcgcatat      1920
     gtacagttta tgcaaaatct gtagttaaaa gcaaaacgaa cacctaactc gtattaggca      1980
     cattaaaatg aactaaaatc atgtataata cactcacaag aaaactttct aacatttacc      2040
     aacgtctaca aatgcgattt tcagcaattt ttcacggttt ttcacgattt ttcgctattt      2100
     actcaaaatt ttgggggtgt acgggcaaaa cggacaccga attcggattc agcgcgtcaa      2160
     aatacatagg gatatatggg tctagtcaaa agtactcccc actttttttt ctttgtgtgc      2220
     cggtgt                                                                 2226
//
ID   Chapaev3-3_AA repbase;    DNA;    INV; 3631 BP.
XX
AC   .
XX
DT   29-FEB-2008 (Rel. 13.02, Created)
DT   05-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Chapaev3-3_AA is an autonomous DNA transposon - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Chapaev;
KW   Chapaev3; Chapaev3-3_AA.
XX
NM   Chapaev3-3_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3631
RA   Kapitonov V.V. and Jurka J.;
RT   "Chapaev3, a distinctive group of animal Chapaev transposons.";
RL   Repbase Reports 8(2), 56-56 (2008).
XX
DR   [1] (Consensus)
XX
CC   Chapaev3-3_AA belongs to the Chapaev3 group of the Chapaev
CC   superfamily of DNA transposons (see comments on Chapaev3-1_PM).
CC   Chapaev3-3_AA is a very young family of mosquito Chapaev3
CC   transposons: genomic copies of Chapae3-3_AA elements are ~99%
CC   identical to their consensus sequence, which was derived from
CC   multiple alignment of four Chapaev3-3_AA elements. Chapaev3-3_AA
CC   contains 13-bp TIRs, imperfect ~400-bp subterminal inverted
CC   repeats, and encodes a 552-aa transposase (2 exons).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(877..1084,1163..2610)
FT                 /product="Chapaev3-3_AAp"
FT                 /note="transposase."
FT                 /translation="MARKCRNDPDSFCFICGQFITVKQKRKLTSFIKLCYE
FT                 LYFKRKLIHQDKEWVPHVCCSTCARLLSAWFKGARHMHFAVPMIWREPTNH
FT                 AKDCYFCLVTVQGISTKNKKMICYPNVRSVDQPTPHSNDLPIPVPPNFQGE
FT                 EMDGVEKISDILTECSSVATYSSNVDVRSMSQADLNDLVRDLNLSKKQSEL
FT                 LASRLKERNFLERDVQITFYRQRQKEFENFFCEENGLLFCQNVDGVMDTLG
FT                 HSHVPSEWRLFIDASKSSLKAALLHNGNQYPTIPVAYSVTMKETYSNLKQV
FT                 LNKIHYDDHCWPICGDLKIIALLLGMQLGFTKHSCFLCEWDSRDRKKHYVK
FT                 KIWPKRQDFTPGNKNVIHSPLVDPLLVLLPPLHIKLGLMKNFVKAMDQSSS
FT                 GFDYIKTKFPEISEVKKKEGVFIGPQIAKLMKDQEFDKTLSKAELRAWYAF
FT                 KTVCRDFLGNRKAENYREKISELLKAYRSMGCNMSLKIHFLHSHLEFFPDN
FT                 LGDVSDEHGERFHQDLKIFEKRYQGQNNTNMLADYLWTLQAGSSEIHHRKS
FT                 YRKTF"
XX
SQ   Sequence 3631 BP; 1188 A; 657 C; 654 G; 1132 T; 0 other;
     cacagcggaa catgattttg tctcaaagac caaattatgt gtctctgaag gtttttgatc        60
     cgctgaatcc aaatctgact tccgatttgc tccagcacgt cacaattttt agatatagct       120
     cgttatatgt agcaaaatta gcgatttcaa tgatttttga caatcaatct atgagtaggc       180
     aaaacgtatt ttatgacaat caatgtcaaa attagttcat ttacatctaa tttatcgatt       240
     catgtaaaaa agttgttcat tttaatataa ttttaaacag tttttagcat tttgtgtaaa       300
     gtttgctttt ccgaaaaaca taatatgcaa gtcagccttt aaatgttgca tgcaagtaag       360
     aaggtgaacg cgtgagtttt aaattgacta aaaaaattta aattacaaat gctagcgttg       420
     tctcaaggat aaaaatgtgt gtctctagtg gaaccaccac ccctgaatct aaatctgtgg       480
     ttgtaatgac tccagcacgt cacatttcat cgaaattact gtattttgat agagtaacaa       540
     acgagaacaa tgtgaagtaa atctatattt ccgttcagct ttggaacttt tatattattt       600
     attttattct attacgctaa catcagtcta ccttgataaa tgatctggta taataacatt       660
     tttttacaat aattacttgt agtgtaatac atttcaatgg gacacaaaat cagcgcgttg       720
     atttcaaatc agttgcatgc gactttgttc gtatgccttt gcatacaagt tgataggaat       780
     tttgacagct ttacaagtcg cgcaaaattg gtgaaccgga aaatcgttaa ttgtccgttc       840
     tttatcaaac tattttcggt ttcaaatccc accaaaatgg cacgtaagtg tcgcaacgat       900
     ccagactcct tttgttttat ctgtggacag tttattaccg tgaagcaaaa gcgtaaactc       960
     acgagtttca tcaaattatg ctacgaatta tatttcaaac gcaagttgat acaccaagac      1020
     aaagaatggg ttccgcatgt ttgctgctct acatgtgcta gacttctttc cgcttggttc      1080
     aaaggtatga ttttttcatt attatgaatg ttggttttgt atttatgcat tgaaaataac      1140
     aaacacatat caacttgctt aggtgcaaga cacatgcatt ttgctgtacc tatgatctgg      1200
     cgagagccta caaaccacgc caaagactgt tatttctgcc tcgtcactgt tcaaggaatt      1260
     tcaacaaaga acaagaaaat gatctgttat ccaaacgtac ggtcagttga ccaaccaact      1320
     ccacattcaa atgatttgcc gataccagtt ccacccaatt tccagggtga agaaatggat      1380
     ggcgtagaaa aaatatccga catattaaca gaatgttctt ccgttgcaac ttactcttcc      1440
     aacgtcgacg ttcgctcgat gagtcaagca gatttgaatg atttagtgag ggatttgaac      1500
     ttgtccaaga aacaatcgga actactggct tctcgattga aagaaaggaa ttttttggaa      1560
     cgcgatgttc agattacatt ctatcgacaa aggcaaaagg agtttgaaaa ctttttttgt      1620
     gaggaaaatg gacttctctt ttgtcaaaat gtcgacggag ttatggatac cttaggacat      1680
     tcgcatgtcc caagtgaatg gcgacttttc atagatgcgt ctaagtcaag tctcaaagca      1740
     gcattacttc ataatggaaa ccaatatcct accattccag tggcctattc cgttactatg      1800
     aaggaaacat acagtaatct caaacaagtt ctgaacaaaa tacactatga tgaccactgt      1860
     tggccaattt gcggtgattt aaaaattatt gcgttacttc tcggcatgca gttgggcttt      1920
     acaaagcata gctgttttct atgcgaatgg gacagcagag atcgaaagaa gcactatgtg      1980
     aagaaaatct ggccaaaacg acaagatttc acaccaggca ataagaatgt catacattca      2040
     ccattagttg atcctctact cgtcttgctg cctccgttgc atatcaaact cggattgatg      2100
     aaaaatttcg taaaagcgat ggatcaatct agttctggtt ttgattacat aaaaacaaaa      2160
     ttccctgaga ttagcgaggt gaagaaaaag gaaggagttt tcatcggtcc acaaattgcc      2220
     aagttgatga aggatcaaga atttgacaaa actctcagca aagctgaatt gcgagcatgg      2280
     tatgcattca aaacagtttg tcgagatttt ttgggaaacc ggaaagcgga aaactatcga      2340
     gaaaaaataa gcgaactttt gaaggcgtat cggtcgatgg gttgcaatat gtctctcaaa      2400
     attcatttcc tccactcaca ccttgagttt tttcctgata atcttggaga cgtgagcgac      2460
     gagcacggtg aaagatttca ccaggattta aaaatttttg agaaacgcta tcaaggacaa      2520
     aacaatacaa acatgctggc tgactacttg tggacactac aagctggttc ttctgaaatt      2580
     caccatcgaa aatcatatcg taaaacattt tagatgtatt cataatagcc gatacatgta      2640
     tcatgtacaa aaatataaag agaaagctcc aaagtaaata aaattttatt tgttcttcat      2700
     tcatacaacc gaataaaaaa acactaatcg atacttcaga gaaactgttt cccaatcttg      2760
     aaaaaaggga ctgcaaggtg atcttttcag cgagctttcc acatggtcag tggttcaccg      2820
     tcactcggat gggaaatttt tgctttagag ggtatacctc tcccaacttg tacgcaatca      2880
     atttcgcatg caactgcttt gactgcgctg attccgtttt tcatgaacat ttttcatcgc      2940
     tgccggaatt attcaaacta tgattatatg atcgtaagta agttatgaat ttattccaaa      3000
     ggtctacatt gttttggcta tgtaaagatg ttctttaaag gaagtagaaa atatattgag      3060
     ttagtattaa tttcgtctgt ttactttatc aaaacaaagc tttttacaaa aaaaaaaatt      3120
     acgtgctagg gaaaatgcaa tggcagattc tgattcagca atctttcttc tactatagac      3180
     acgcattttt gtcgctgaga caacgccaac atataacatt ttcgatttat gatgtcaaag      3240
     aagagccatg ctatcgccgt tcaacttgca tgcaacatct tcaggctagc ttgtaaggga      3300
     tttatttcga taaagttgac ttaatctaaa atgctcaaaa cttttggaaa aaaaatttat      3360
     aattcacaaa tttttacata agtagataga ataaatgttg attaactgat tttgacattg      3420
     attgccatga aatacaattt gcatgcttaa tggctgtcaa ttaaatagcc cccaaaatgg      3480
     taatattgtt atataaatcg agctatatct caaaattgtg acgtgctaga gcagatctga      3540
     ggtaagattc ggattcagcg agccaaaaac tttcagagac acataaaatt atccttgaga      3600
     caaaccaaag gctatttttt gttccgctgt g                                     3631
//
ID   Chimpo_I    repbase;    DNA;    INV; 4059 BP.
XX
AC   .
XX
DT   30-JAN-2008 (Rel. 13.02, Created)
DT   22-FEB-2008 (Rel. 13.02, Last updated, Version 1)
XX
DE   Internal portion of Chimpo retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR-retrotransposon; Chimpo_LTR;
KW   internal portion; Chimpo_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4059
RA   Bello X., Bartolome C. and Maside X.;
RT   "Chimpo - Gypsy-like retrotransposon from Drosophila
RT   melanogaster.";
RL   Repbase Reports 8(2), 62-62 (2008).
XX
DR   [1] (Consensus)
XX
CC   Conceptual translation suggests that ORF1 and ORF2 overlap 52
CC   nucleotides. There is a one-nucleotide frameshift (+1) between
CC   both ORF.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..893
FT                 /product="Chimpo-I_ORF1"
FT                 /note="Conceptual translation, with homology to GAG
FT                 protein."
FT                 /translation="MQNTGDCLPAPPTSPDSGEIQRGNSAGTVIPVVESVA
FT                 TIKLPPFWKQNVRLWFVQIEAQFQCSRISSDNTRYYHLISALDADIMTEVS
FT                 DVLAQPSEVNKYEHLKEIIIKRFTESPDRQLQRALLELDLGDKKPSQLLRQ
FT                 MTTLADGRASADALRVRWLSQLPQHVQRGLKLLRSATLEEQTALADDLMEE
FT                 ESGSFVMAAGSSSAPQFRGNTREYAPAAGTSVVDDLKRDIAAIKASLTLLQ
FT                 NMQPPSHSRSADRNQQQLRAPRVCFYHAKFGPNARKCSSPCAWVPQQGN"
FT   CDS           845..4059
FT                 /product="Chimpo-I_ORF2"
FT                 /note="Similar to POL; RT and rve (integrase)
FT                 domains. ORF extends 30 residues into LTR."
FT                 /translation="CTKMLLALCLGATAGKLKKLSPVQATGDSRPPSTRLS
FT                 KEYRLHIIDRNTHIKFLIDSGSVISLIPVSIIKGLHRRKDDFKLYAANTSI
FT                 IDTYGTLNNLTFGLNLRRNFTWSFVVANVQSAIIGADFLTHHGLILDLKGK
FT                 RLMDPSKAVSTKGEVAEAKLYNVSTINVQSSSGIDRPYSNLLSRFVQITRP
FT                 NVPLATRIHNEVAHCIQTTGPPVFDKPRRLTGEKLKAARRDFDLLLQQGVI
FT                 RPSSSQWASPIHLVPKGSNEWRTTGDYRKLNASTIPDRYPIPHGEDILQRL
FT                 HGCSVFSTIDLVRAYHQIPVAPDDIPKTAVTTPFGLFEFVGMPPGLRNAAQ
FT                 TFQRHMDNLLRGIPFVGCYMDDIIVFSTTHEEHLKHLQTIFEILQRNHLQI
FT                 NPKKCQFGKSEVIFLGFQVNASGFKPPVERTQAINNFPKPQTIMELRRFLG
FT                 MVNYYRHLIPNAAQAQIPLTDYLKGATKNDKREIAWTGPAESAFQACKQGI
FT                 LRATCSSFLSPSAHLALKTDASDTAIGAALEQLVGNVWRPIGFFSRKLSPA
FT                 EQGYSTYDRELLAIFAGIIHFKHILEGRPFIIQTDHKPLQYAFRQKASKAS
FT                 PRQLRQLDFISQFSTEIVYNPGENNAVADALSRINTISMPSSFSAQAIFEA
FT                 QQTDDEMAELSQTTSLGLQVRNIDNLDIWCDISGGRERPYLPKSLRRQAFD
FT                 AVHGLAHPSGRTTAKLLKQRFVWPAINRDATLWSRQCVPCQRAKIHRHTRS
FT                 PVEKIDVPDNRFEHIHVDLIELPTIRNLRYCLTIIDRFSRWPAAIPLSNIT
FT                 AETVATALYTQWICMFGCPLTITTDQGTQFESSLFAELAKLIGAERIRTTA
FT                 YHPQSNGIVERWHRTLKAALMCKSHIAWPDLLPTVLLGLRSAFKADLQSSP
FT                 AEMLFGTTIRIPNEFFESHTPTAFSKDHRLTEQLRQHIRAARPTPAAHHAK
FT                 PPVFICKDLRTCTHVFKRVASVKKPLEPPYTGPHRVIRRVDDKFYIISIHG
FT                 QEKAISVDLLKPAFLAEADACEDHHEDPPPDQQISQPPTPPSPAPAAPEFI
FT                 PLPSPPGEVTGGGVD"
XX
SQ   Sequence 4059 BP; 1049 A; 1187 C; 892 G; 931 T; 0 other;
     ttggtgaccc cgcaataagc aaaatgcaga acaccggaga ttgtttgcct gcaccgccca        60
     cttcgcctga ctctggtgaa attcaacgcg gcaacagcgc aggcaccgtt attcctgtcg       120
     tcgagtcggt tgccaccatc aagctaccgc cattttggaa gcaaaatgtg cggttatggt       180
     ttgtgcagat cgaagcgcaa tttcaatgca gccgcatttc ttcagataac acgcgctact       240
     accatttaat cagtgctttg gatgctgata taatgactga agtatctgat gttctggcgc       300
     aaccctcgga agtaaacaaa tacgagcacc tgaaggagat tattatcaag cgatttacgg       360
     aatcgccgga cagacagttg cagcgcgctt tactggagct tgaccttggg gacaagaagc       420
     cctcgcagct ccttcggcaa atgacaacac ttgctgatgg tcgcgcgtct gcagacgcct       480
     tgcgagtccg ctggctctct cagctaccgc agcacgtaca acggggcttg aagctcctac       540
     gctcagcaac tttggaagag caaactgcac tcgctgacga tctcatggaa gaggaatcgg       600
     gttcttttgt catggctgct gggtcctcct cggcaccaca attcagaggt aacacccgcg       660
     aatacgcgcc ggctgctggc acaagtgtcg tggacgactt gaaacgcgac atcgctgcca       720
     tcaaggcctc tttaactctt ctgcagaaca tgcagcctcc cagccattct cgctcagccg       780
     atcgcaacca gcagcaactc cgagcaccac gtgtctgctt ttatcatgcc aaattcggac       840
     ctaatgcacg aaaatgctcc tcgccctgtg cctgggtgcc acagcaggga aactaaagaa       900
     gctgtcacct gttcaggcga ctggtgacag cagacctcca agcactcgcc tctcaaagga       960
     gtaccgactt cacataatcg atcgtaatac ccacataaaa ttccttatcg actccggatc      1020
     agtcatctca cttatacctg tttcgataat caagggattg catcgtcgca aagacgactt      1080
     caaactctac gcggccaaca cgtctataat tgatacctac ggcacgctaa ataatctaac      1140
     ttttggtctc aacttacggc gtaacttcac ctggtcgttc gtcgttgcga acgtccaatc      1200
     agcaatcatc ggagcagatt tcctcacgca ccacggcctc atcctcgacc tcaagggtaa      1260
     acgccttatg gatccctcaa aagctgtttc gaccaaagga gaagttgcag aagcaaaact      1320
     ctacaacgtt tctacaatca acgtgcaaag ttccagtgga atagatcgcc cgtactccaa      1380
     tcttcttagt cgctttgtgc agatcacacg tcctaatgtg cctttagcaa cccgcattca      1440
     taacgaggtt gcgcattgca ttcaaacaac tggcccacct gttttcgaca agccaagacg      1500
     gcttacaggc gaaaaattaa aagcggcacg ccgagatttc gatctcttac tccagcaagg      1560
     agtgattcgt ccctccagca gtcaatgggc cagtcctatt catttggtcc ccaaggggag      1620
     caacgaatgg cgtactactg gggattatcg caaacttaat gcgtccacta ttccagatcg      1680
     ttatccgatt ccccatgggg aagacattct tcaacgtctg catggatgct cggttttctc      1740
     cacaatcgat ttggtgcgtg cctaccacca gatcccagtc gctccagatg atattccgaa      1800
     aacagccgtc actacaccgt tcggcctttt cgagtttgtc ggcatgccac ccggactccg      1860
     caatgcagcg caaaccttcc agcgccacat ggacaacctg cttcgtggca ttccattcgt      1920
     aggatgctat atggacgaca tcatcgtgtt ctccacaacg catgaggagc atttgaagca      1980
     cctccagaca atctttgaga ttttgcagag gaaccacctc caaattaacc ctaaaaagtg      2040
     ccaatttggt aaaagtgagg ttattttctt agggttccaa gtcaacgcga gcggattcaa      2100
     gccccctgtt gagcgcacgc aagcaatcaa caattttccc aagcctcaaa ctatcatgga      2160
     attgcgccgg tttttgggaa tggtcaacta ttaccgacac ctcatcccaa acgcagctca      2220
     ggctcaaatc ccgctcacag actacctaaa aggcgcaacc aaaaatgaca agcgcgaaat      2280
     agcctggacc ggccctgcgg agagtgcatt ccaggcctgc aagcaaggaa ttttacgtgc      2340
     cacgtgctct tcgttccttt ccccatcggc tcacctcgcc cttaaaacgg acgcctccga      2400
     tacagcgatc ggtgctgctc tcgaacaact agtcggcaac gtttggcgtc ccatcgggtt      2460
     tttctcgcgg aaactatctc cggcagagca aggctacagc acgtatgatc gcgagctcct      2520
     ggctattttc gctggtatca tccatttcaa gcacattcta gagggtcgtc cattcatcat      2580
     ccaaaccgac cataaaccat tacaatacgc tttcaggcag aaagcaagca aagcatcgcc      2640
     tcgacaactc cgccaattgg attttatctc ccaattctca acggagatag tgtacaatcc      2700
     cggggaaaac aacgcagtgg cagacgccct ctcacgcatc aacaccataa gcatgccgtc      2760
     tagcttcagt gctcaagcga tattcgaggc ccaacaaacc gacgatgaaa tggctgagct      2820
     ctctcaaacc acgtccctgg gtttacaagt taggaacatc gacaacctag acatctggtg      2880
     tgacatctcg ggtggacgcg agcggccata tttacccaaa agtctgagac gccaagcttt      2940
     tgatgcagta catggattgg cgcatcccag cggccgtaca actgcaaaat tacttaaaca      3000
     gcggtttgtc tggccagcaa ttaaccgtga tgccaccctc tggtctcgac aatgcgttcc      3060
     ttgccagcgg gccaaaatcc atcgccacac acgcagcccg gtggagaaga tcgatgttcc      3120
     tgacaatcgt ttcgagcaca ttcacgtcga tctgattgaa cttcccacaa tccgtaactt      3180
     acgctactgt cttaccatca tcgaccgctt cagcagatgg cctgcagcta ttccactatc      3240
     caatatcacc gcggagactg tcgcgacagc tctgtataca cagtggatct gcatgtttgg      3300
     ctgcccactc actataacaa cggaccaggg aactcaattt gaatcctcat tgtttgctga      3360
     gctggctaaa ctaattggag ccgaaaggat tcgtacaacc gcatatcacc ctcagtcaaa      3420
     tggcatcgtg gagagatggc accgaaccct caaggccgcc ctgatgtgta agtctcacat      3480
     agcatggccg gatctcctgc ctacagttct gttggggctg cgctcggcgt ttaaggcgga      3540
     cctccagtca tcgccagccg aaatgctttt tggcaccact attcgtatcc ccaacgaatt      3600
     ttttgaatcg cacactccaa ccgccttcag caaggatcac cgactaaccg agcaactacg      3660
     tcaacatatc agggcagccc gacctactcc tgcagcgcat catgctaaac cacctgtttt      3720
     catttgtaag gacctgagaa cttgtacgca cgtcttcaag cgagtggcat ctgttaagaa      3780
     accactcgag ccgccttaca cgggacctca tcgggtaata cgccgggttg atgacaagtt      3840
     ctacatcatc agcattcatg gacaagagaa ggccatatca gtcgatctcc tcaagcctgc      3900
     cttcttagct gaagctgacg cttgcgaaga ccaccacgag gatccaccgc ctgaccaaca      3960
     gatttcgcag ccacctacac cgccgagccc tgcacctgca gctccagaat ttataccgtt      4020
     accttcacca cctggcgaag tcactggagg gggagtaga                             4059
//
ID   Chimpo_LTR  repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   30-JAN-2008 (Rel. 13.02, Created)
DT   21-FEB-2008 (Rel. 13.02, Last updated, Version 1)
XX
DE   Chimpo_LTR is a long terminal repeat from Chimpo.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR-retrotransposon; Chimpo_I; Chimpo_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-207
RA   Bello X., Bartolome C. and Maside X.;
RT   "Chimpo - Gypsy-like retrotransposon from Drosophila
RT   melanogaster.";
RL   Repbase Reports 8(2), 63-63 (2008).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..88
FT                 /product="ORF2"
FT                 /note="The first 88 nucleotides correspond to the
FT                 3' end of ORF2 of Chimpo_I pol protein."
FT                 /translation="VAPRLKPGLASRRKQVLTPRPFLEDDIF"
XX
SQ   Sequence 207 BP; 66 A; 52 C; 44 G; 45 T; 0 other;
     tgtggcgccc agactgaagc ccggtctggc atcacggcga aaacaggtac taacgccaag        60
     acctttcctg gaggacgata tcttctgata tcgtcagact ggacacactg gaacttcagc       120
     tccgccgcgc aacaagctta cggcattaaa acaacaagat attgtactta gtaattaaat       180
     aaagcggtaa ctacataagt taccata                                           207
//
ID   Chouto_I    repbase;    DNA;    INV; 5715 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.03, Created)
DT   05-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Internal portion of Chouto retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; Chouto_LTR; Chouto_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5715
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-5715
RA   Bello X., Bartolome C. and Maside X.;
RT   "Chouto - Gypsy like retrotransposon from Drosophila
RT   melanogaster.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
CC   Conceptual translation suggests that ORF1 and ORF2 overlap 61
CC   nucleotides. There is a one-nucletide frameshift (+1) between
CC   both ORFs.
CC   The sequence is a consensus rebuilt by Bao, W. and Jurka, J.,
CC   based on the original sequence submitted by Bello, X. et al.
XX
FH   Key           Location/Qualifiers
FT   CDS           559..1893
FT                 /product="Chouto_I_1p"
FT                 /translation="MSETESEELVDQLSKLALTDEAERIRKKTYNMDPQQL
FT                 QAVINVAVSAALNVQREDFEKKLEEVKNKFTASTISAPEIAVYVPIAVTGN
FT                 VSCDEGLDAVKSLPEFDGSQGKYVSWRQAAAAAYELFREYSGSSRHYQAVL
FT                 IIRNKIRGSADSVLSSFNTVLNFDAIISRLDFTYSDKRPLHLLEQELTTLR
FT                 QGQMSITQFYEEVEKKLSLLTNKTTMTYETDHARYMNDKHRSDALRVFISG
FT                 LKRNLTDVLFAAQPADLPSALAMAQEIEANHERHAFATQYARSIEEKYLRQ
FT                 AQNRQLQRTTESNHEPTFKKWVKNPFFTRDNGGRPVVDNRPLEKMDVDPTL
FT                 SRFRQLTNFQRPQGFSMPQALDAQQQSAQNRPTSSQRMSDFKRQRVNHLFE
FT                 EDRNDQKEDHYNQIANDAVDDIDGEEETDYESDSVHFLGVHPCFRSSSEQ*
FT                 "
FT   CDS           1833..4940
FT                 /product="Chouto_I_2p"
FT                 /translation="KRFRTFFRGSSLLPFVQRTVAGEQRKFLVDTGASKSY
FT                 IKKEIGLPTSVPVDSPFIVKSLHGFEKIERKCELDLFGVESHFFLLPGLKT
FT                 FDGIVGLDLLAQVGATIDLKGNSVKFNGGREDLHFQKCAQVNFTKIEDIVV
FT                 PPKVQEDFQQMMCKNSRAFDDPNEKLPFNTNVVATIRTEDNEPVYSKLYPF
FT                 PMGASDFVNREIKDLLRNGIIRPSRSPYNNPIWVVGKKGTDAAGSPNKRLV
FT                 VDFRKLNLKTIADRYPMPSINMILSNLGRSKFFTTLDLKSGYHQIELAELD
FT                 REKTSFSVNGGKYEFCRLPFGLKNASSIFQRAIDDVLRDKIGKICYVYVDD
FT                 VIVFSETEESHIVHIGQVLESLHKANMRVSRQKSKFFKESVDFLGFVVTKE
FT                 GIRTSQDKVQAIKDFKQPSNLFELRSFLGLASYYRCFIKDFASIARPLTSI
FT                 LKGESGRVSKYRSKGIPVSFDKSQLRAFDKLRSILASEDVILHYPDFTRPF
FT                 DLTTDASSFGIGAVLSQGNRPITMISRTLKERELNYATNERELLAIIWALD
FT                 CLRHYLYGKNDINIFTDHQPLIFAVSDKNPNSKIMRWKARIEESGAKVMYK
FT                 PGKENCVADALSRQNINALQSSSESDRATIHSEESSTFVIEATEKPLNCFQ
FT                 NQIVLEEASVPNKRLFIVFGTKTRHQIDFTDWETLLDLVKDVVTPNVVNAI
FT                 HCELPVLARIQDSLVRLFPATKFWFCKSWVADVIKPDEQKEILVIEHNRAH
FT                 RAAQENVKQVLLDYYFPKMGKIAAEIVLNCRVCQKAKYNRHPVKQELGITP
FT                 IPTQVGEMLHIDIFATGGKYFLTAVDKFSKFAVVQPIASRSILDVKTPILQ
FT                 LVNLFPNVKSIYCDNEASLNSETIRSMLKNQYDIEIENAPPLHSTSNGQVE
FT                 RFHSTLIEIARCLKLERKIEDFTELFLQATIEYNRSFHSVTNRKPVEIIHA
FT                 NADIAPDIIMSLKKAQQEQLDRNNPTRQNRVFERGEKVLVKTNKRLGDKLT
FT                 PLYVENRVDADIGTTVLIQGRVVHKDNIR*"
XX
SQ   Sequence 5715 BP; 1802 A; 1141 C; 1253 G; 1517 T; 2 other;
     ggcgcccaac caagtcgacg accccgacaa gatcacataa tctggaaggc acgagctaaa        60
     taaaacccat ttgagttggc aatctaggac gaactgtcct gggcagagga gaaggagaca       120
     aacgcaacaa caaaacccga aaaggaagaa ggaaaactat catagattca tgtgagtgaa       180
     accccttttt atgaattgcc aaaagaaatt aaaaggaaat gtaacaaaat aatgcaatta       240
     aatgttaaat ctcagttaag acatttattt tggaaagagt gttggcacta atttaaagta       300
     attgcaaatt gagtagtttc tactttgcat agaaggtaca gttttcagcg gacgactagt       360
     tgcatgctta tctctcggtc ccggtgtttt ttttcctaat agtaaaatct gagacacgtg       420
     caagaatacg gtgaatagat aagcgcttag cttagcgcct agcttggcga gcgatcaatt       480
     ttttcttacc tttcccttgt attctgcact tgtttgcatt atctgtgcgg gactgccaaa       540
     taccttgacg gcggttgtat gagcgagaca gagtctgaag agttggttga tcaactgagt       600
     aaactcgctt taaccgacga ggccgaacgt ataagaaaga agacatacaa tatggatcca       660
     caacaactac aggcagtcat aaatgtagcg gtatcggctg cattaaatgt gcagagagaa       720
     gattttgaaa agaagttgga ggaagtcaaa aataagttta ccgcttcaac aatatctgct       780
     cctgagattg cagtgtacgt gcctattgct gtaaccggca atgtgagttg tgatgaaggc       840
     ctcgatgcgg taaaatcatt gccagagttt gatgggtctc agggaaaata tgtttcttgg       900
     cgacaagcag cagcagctgc atatgaatta ttcagagagt atagcggtag ttctaggcat       960
     taccaggctg ttctcataat ccgtaacaaa attaggggat ctgctgactc tgttctttct      1020
     tcatttaata cagtccttaa ttttgacgcc attattagcc gccttgactt tacctattcc      1080
     gataaacgcc cattacactt gctcgagcaa gagcttacaa cactcaggca ggggcagatg      1140
     tctattacac agttttatga ggaggttgag aagaaactct cactccttac aaacaagaca      1200
     actatgacat atgagacgga ccatgcccga tatatgaatg ataagcatag gtctgatgcc      1260
     ctgcgtgtct ttatttctgg gctaaagaga aacttaactg atgttctatt tgctgctcaa      1320
     cctgcagacc tgccttcagc cctagcaatg gctcaggaaa tagaggcaaa tcacgagagg      1380
     catgcctttg cgacacaata tgccaggtcc atagaagaaa aatatctcag gcaggctcaa      1440
     aatcgtcaat tacaaaggac aacagaatcc aaccatgaac cgacgtttaa aaagtgggta      1500
     aaaaatccat tttttacaag ggacaatggt ggacgacccg ttgttgacaa tagaccgtta      1560
     gagaagatgg acgtagatcc aacattgtcg aggtttcgtc agctgacaaa ctttcagcgc      1620
     cctcagggtt tttccatgcc acaggcgctt gacgcacaac agcagagtgc acaaaataga      1680
     ccgactagct ctcaaagaat gtctgatttc aagcgtcaaa gggttaacca tctgtttgaa      1740
     gaagatagga atgatcaaaa ggaggatcat tataatcaga ttgctaacga tgcggtggat      1800
     gacatagacg gtgaagagga aacagactat gaaagcgatt ccgtacattt tttaggggtt      1860
     catccctgct tccgttcgtc cagcgaacag tagcggggga gcaacgaaaa tttctagtgg      1920
     atacgggagc ctctaaaagc tacatcaaga aagagatagg attgccgact tcagttcccg      1980
     tcgactcacc ttttattgtt aagtcacttc atggctttga aaaaatagaa cgcaaatgtg      2040
     agcttgatct gtttggtgta gagagccatt tcttcttatt acccggactt aaaacatttg      2100
     acggmatagt tggccttgac cttttagctc aggtaggtgc gacaattgac ctcaagggca      2160
     attctgtcaa gtttaatgga ggacgtgaag atctacactt tcaaaaatgc gctcaagtta      2220
     actttacgaa gattgaggat attgtcgtgc ccccaaaagt tcaggaagat tttcagcaga      2280
     tgatgtgtaa aaactcgaga gcctttgatg atcccaatga gaagttacca ttcaacacaa      2340
     atgtcgtagc gaccattcga acagaggaca atgagccagt ttattcaaaa ttgtacccgt      2400
     ttcctatggg tgcttccgat ttcgtgaatc gggagattaa agatctactc agaaatggca      2460
     ttattcggcc atccaggtct ccctacaata accccatatg ggttgtaggt aaaaaaggca      2520
     ctgacgctgc gggatctccc aataaacgct tagtagtcga tttcaggaag ttaaatttaa      2580
     aaactattgc cgatagatac ccgatgccga gtataaatat gatactgtcg aatctcggga      2640
     gatcaaaatt tttcaccact ctcgacctta agtccggata ccaccagatt gaacttgcag      2700
     aattggaccg agaaaagaca tcattttccg tcaacggagg caaatatgag ttctgccgcc      2760
     taccgttcgg gctgaagaat gcctcaagca tctttcagag ggccatagat gatgtactac      2820
     gggataagat aggaaaaatc tgttacgttt atgtggatga cgttattgtt ttttcagaaa      2880
     ctgaagagtc ccacattgtt catatcggac aggttttaga gagcctccat aaggccaata      2940
     tgcgagtgtc taggcaaaag tcaaaatttt ttaaagaaag tgttgacttc cttggttttg      3000
     ttgtcacaaa ggagggtatt aggacaagcc aggacaaggt ccaggccatc aaggatttta      3060
     aacagcccag caatttgttt gagctgagat cgttcttggg cttggcaagt tattatcgat      3120
     gctttataaa ggatttcgca tcaatagcta gacctttgac gagtattctg aaaggtgaaa      3180
     gtggcagggt cagcaaatac cgttcaaaag gcattccggt cagttttgat aagtctcagc      3240
     ttagagcatt tgacaagctt agaagtatcc ttgcatcaga ggacgttatt cttcattatc      3300
     ctgattttac gcgaccattt gatttgacga ctgatgcgtc atcctttggc ataggtgcag      3360
     tactgtctca gggaaacagg ccaataacaa tgatatcccg aacgctaaaa gaaagggaat      3420
     taaattatgc gacaaatgaa agggagttat tggcaatcat ttgggccttg gactgtctcc      3480
     gacactacct ctatggcaaa aacgacataa acatatttac ggaccatcag ccccttatat      3540
     ttgcggtctc tgacaagaac ccaaattcaa aaattatgcg ttggaaagcc cgaatcgaag      3600
     agagcggtgc aaaggtcatg tataaaccgg ggaaagaaaa ttgcgttgcg gacgctctgt      3660
     cgcgacaaaa tattaacgct ttgcagagct catcagagtc agatcgagcc actattcaca      3720
     gtgaagaatc ctcaacattt gtcattgagg ccacggaaaa gccattgaac tgtttccaga      3780
     atcaaatcgt attggaggaa gcatccgtgc cgaataagcg actatttata gtatttggta      3840
     ctaagacacg tcatcaaatt gattttactg attgggagac attactggac ttagtaaaag      3900
     acgtagtaac acccaacgta gtgaatgcca tacactgtga gcttccagtc ctggcccgta      3960
     ttcaagatag tctggttcgg ctctttcctg cgaccaagtt ttggttttgt aagtcttggg      4020
     tggcggacgt tatcaagcct gatgagcaaa aagaaatttt agttattgaa cataacagag      4080
     ctcatagggc tgctcaagag aacgtkaagc aagtgctact tgactactat tttccaaaaa      4140
     tgggtaaaat tgcagccgag atcgttttaa actgcagggt ttgccaaaag gcaaaataca      4200
     acaggcatcc agtaaaacag gaattaggta taaccccaat accaacgcag gttggggaga      4260
     tgttacatat agacatcttc gcaacagggg gaaagtactt cctcaccgct gttgataaat      4320
     ttagcaagtt tgcggtggtt cagccaattg catcgcgttc aatattggat gtaaagaccc      4380
     caatccttca gctggtcaac ctttttccta atgttaaatc gatatattgc gataacgagg      4440
     catcgcttaa ctccgaaaca atacgatcca tgctaaaaaa tcaatacgat attgaaatag      4500
     aaaatgcccc acctctacac agtacgtcca atggtcaggt ggaaaggttc cacagtactc      4560
     ttatagagat agccaggtgt cttaaattgg aaaggaaaat agaagatttt actgaattat      4620
     tccttcaggc gactatagag tataacaggt catttcactc tgtcacgaat agaaaacctg      4680
     tcgagatcat ccatgctaat gccgacattg cccctgatat aatcatgagc ctaaagaagg      4740
     cacagcagga gcagttagat cggaataatc cgactaggca gaatagagta tttgagaggg      4800
     gtgagaaggt gttagttaaa accaacaaga gactggggga taaacttacg cccctgtatg      4860
     tcgagaatag ggtcgatgct gatataggga caacggtcct aattcaaggg agggtggtcc      4920
     acaaggacaa tattcggtga ggccacttac aagattgatt tataggctaa aaagttgtgg      4980
     cagatactct ggcgtgttac ccaaaaattc aggctcgtat aaatgctcac gcaaccatcg      5040
     cagtaaaaca ttaaatctaa ttttctttgt aaattcaaat ttatttaaat taaaaaaata      5100
     catatattga aagtaattta attgccctca ctcttgccaa aataaatatt ttgcattctt      5160
     tgaagttgca ctgttgaccc aaaggcgatt ataaaaaagg tttcacaact gttaacctaa      5220
     aatactagga aatactatgt ttattattga atcttgtaca attaatttta gtttgtatgg      5280
     tagataattt gaaaagcgca caccgaccgg atatcacacc tcgatgaaaa caaatgaatg      5340
     caaggtcgaa ctagaagcgt tgctgtcagc tcatggaatg gggtacaatt aaccgtttgc      5400
     agcctgttgg tcggctcatc tcatcgacct agcacgcata tcaaggatcg gccaactact      5460
     cttcgtcaac ttgcacctgc agccttaatc ctgccctttc ttcactagtc aaacgaagaa      5520
     atgctgcaga atataactgg ttacaaatgc ttacaatcag atgccacctt caccaacatc      5580
     aatccgcttt gcattctacg taatgttaaa tatcatgatt tatcaagcgg caaagtggag      5640
     cctcgatgtc gacaacgcaa atccttgata acatagacat ggacgaggac gcccattttt      5700
     aatgtgatgg ggagt                                                       5715
//
ID   Chouto_LTR  repbase;    DNA;    INV; 618 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.03, Created)
DT   05-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Gypsy-like element from Drosophila melanogaster.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; Chouto_I; Chouto_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-618
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-618
RA   Bello X., Bartolome C. and Maside X.;
RT   "Chouto - Gypsy-like retrotransposon from Drosophila
RT   melanogaster.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 618 BP; 156 A; 173 C; 149 G; 140 T; 0 other;
     agttaacaag taacatcagg aaaagctgcg tgtgacgacg aacgacacac gaagctatac        60
     ttcggatgct ggtcggcggc cgtgatctgt gcgagatagg gtaatcttaa gctttctttc       120
     tttgtattac ttagttctga actgacagcc gaaataaagt gatgttatcg taagatacct       180
     gccgtgaata tcaagtcgga gctacgaccc tgctaccggc ttattccagt tggtcacttc       240
     agctatagtc accgatcgtg gacaccacct gatcccgagg tgatccgcac tctgcaccac       300
     accgccgctg cagaggcgac aacgaggtga ctgtgttgtg agcagcaacg tgtcgcaaca       360
     cacattcagc aaccacttgg tcactttagc tatagtcacc gatcgtggcc actacctggt       420
     cctgatccac actctgtacc acaccacagc tacagaggcg acaacgaggt gactgtgttg       480
     tgggcagcaa ctcgccgcaa cacacttcag ctaccacgtg agcagcaacg tgccacgttg       540
     acatcccctt gcaacaacgg tgcaggcgga ggagttcgcg ggcaactacc ttgccgcgtc       600
     catctttaaa tcatatct                                                     618
//
ID   CLAI_CT     repbase;    DNA;    INV; 112 BP.
XX
AC   M24188;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   20-SEP-2005 (Rel. 2.02, Last updated, Version 3)
XX
DE   C.thummi ClaI repeat.
XX
KW   Nonautonomous; CLAI_CT; ClaI repetitive sequence.
XX
NM   CLAI_CT.
XX
OS   Chironomus thummi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-112
RA   Schmidt R.E., Godwin A.E., Keyl G.H. and Israelewski N.;
RT   "Cloning and analysis of ribosomal DNA of Chironomus thummi piger
RT   and Chironomus thummi thummi.";
RL   Chromosoma 87(4), 389-407 (1982).
XX
DR   GenBank; M24188; Positions       1     112.
XX
SQ   Sequence 112 BP; 50 A; 11 C; 13 G; 38 T; 0 other;
     tatatttttt tgaaaagagc ctactatgat cgaaaacaaa aaatgcttta aatagcattt        60
     taaaacatat ctggtattat aaatgataaa gaatgcaaat ttcgtataaa ta               112
//
ID   Clu-111_AG  repbase;    DNA;    INV; 824 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-111_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-824
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1449-1449 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 824 BP; 227 A; 176 C; 176 G; 242 T; 3 other;
     tacacctgtt ctcactttcc tctgaatcgt tatccggttg ctatggatcg caatccatga        60
     gaatggatcg caatcaacta cgtctgaatc gttttcagct acgtctggat cgttttcagc       120
     tacgtttgga tcgctctcag ctacctttgg attttgcggt agctcgcgca aatttcgttg       180
     cagcgcaacc gtttattcgg tgaccgcggg acacatttgc accccaagga aagaactaaa       240
     caattaatgc attcaattgt aaaatctwat cgtatttttt atatgaagct tacatcacca       300
     ttcatacgtt tttgattatt wgaccaagtt ttccaaacaa accwgcacaa tcttcttctt       360
     tttggcgtaa cgacctacgt ggtcattcag tcctgttcag gctttcgagg tttagccgga       420
     tattccttct ttggtatgga gggacggtct ggttgggaat ctattctgat gcgtagaagc       480
     cgacaaatct gtcaaatgtt gttcattgct taaaaatggg ttttcaacac aagttctcaa       540
     ttgggttcaa acatagaaca atacgaaatt gttgcttttc aaatcgtctg ttatgaggag       600
     aatcgtgagg tacgccgaac ggtcactaaa taaactttgc gccgcaacga gatttgcgcg       660
     agctaccgta aaatccaaag gtagctgaga gcgatccaaa cgtagctgaa aacgatccaa       720
     acgtagctgc aaacgattca gacgtagttg attgcgatcc aatctcatgg attgcgatcc       780
     atagcaaccg gataaagatt cagaggaaag tgagaacagg tgta                        824
//
ID   Clu-11_AG   repbase;    DNA;    INV; 899 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-11_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-899
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1435-1435 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >98% identical to consensus.
XX
SQ   Sequence 899 BP; 287 A; 161 C; 175 G; 276 T; 0 other;
     tagcggaatt tggggcaagt gtgccatacg gggcaagagt gccaccaagc atttttcctt        60
     aaaaacttta gtttaatgat caattgtgta tacagttggt tcctttccaa tgactaggta       120
     tactgagccg aatttcatat agaccaatcg atatttccca ttgttttgaa ctgatttata       180
     ttgagtttca aaattgagca gaatattata attttttaat ccaaccaaat aagctctcaa       240
     aaatcatgcg aacaatcaac cgagaaaata tttacaccac cgtatagctg agaaaacgtg       300
     aaattttttg tggggttagt tgaaaaaaac tttctttttg tcactgaaaa attcaatttc       360
     aaaaaagtta caacttttgg ggcaagtgtg ccatctctgt ttggggcaag tgtgccacca       420
     tctttcatag gcgcgagctg tcaaaaatgt aaacattgtt gtagcgtgct gcggaatggt       480
     gcgctattgt gagcggattc cacgccagaa aaacagaaca gtaacaaacc atattgtggt       540
     acagttggtg gtcaaaaagg gttcattggt gactaaatac atgtaggaat acatacacta       600
     gtggtacaaa cgtaataatt tccaattatc taagaaatac ggttatttta accaggtggc       660
     cgtcttgccc catacgagtg gcactcttgc cccatagccc aaaaaacaac gtctttttgg       720
     acccttttta aaacgcttca aaaactgttt tatttgcact tttttcaagc gaaactcatt       780
     tataagtgag gaaatagatg taaaatggtt atgagattta aatcggcttt tgaaaaacac       840
     gttttagtga gttataactt gaaatgctta aggtggcaca cttgccccaa gttccgcta        899
//
ID   Clu-12_AG   repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-12_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-409
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1436-1436 (2010).
XX
DR   [1] (Consensus)
XX
CC   TAA TSD.
XX
SQ   Sequence 409 BP; 123 A; 66 C; 86 G; 134 T; 0 other;
     gcgaaaggcc acgggagtga caaaatgctg acaaattttt caaaatgtga gcttttgtca        60
     cttttttgag cttttgtcaa aattttgtga cctggagcag ccaggaaaaa aagttgacaa       120
     aagttgacaa aatttgacgt tcgtgaaaaa gcgtaaacaa acagctattt ggcgcagttg       180
     tgacccattg ttatgataat aatgctaaaa tgcatgattc taattgattt atgtacctag       240
     ttagtgcttc ttaaacaaaa tatcgatgat attcagatgt tggagctttt tgtcgctctt       300
     gtgtatgttt ttggtgcggc cacgagaaaa gctctttttt gcagttgaca agcaattttg       360
     acaaagttga aaaatttttc aacatttttt cagctccgtg gccacgcgc                   409
//
ID   Clu-137B_AG repbase;    DNA;    INV; 1168 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-137B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1168
RA   Jurka J.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1450-1450 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD. >95% identical to consensus.
XX
SQ   Sequence 1168 BP; 376 A; 190 C; 189 G; 405 T; 8 other;
     cccaagtagc cttaagaaac tttatttgat tattaacagt gttttaaagc ctttaaaaat        60
     caaatagagt ttcttaagag aatgtgacat ttgtcagcgt cacagcataa cgacgtattc       120
     cgttaccctg ttttttttcg attcgggcca atataacaca cagtgttttt caaattttat       180
     ctacaccagt ttcattgttt caatattcgg aaaattattt ttttattctt atttatgtaa       240
     taatgcgcat ttattttcac aacaanatat ttgtttgttn aacggtacgn aaaatatgtt       300
     tttctttttt tccttnactt gaatctacgg tgctaataaa aaaaaaataa taaaaaaata       360
     atgtttcaaa nttttnaata ttatatgcga tgagtttgat gaaggatatg ctaatgagat       420
     aaatnttcat aaaaaaatat tttttgtaca aaataatata ctcttgatga tgataatttt       480
     tgagacatac tgtacatggt cacgtacatg gcgcctccat ttcttatgtc aaaaagttcg       540
     tcaagcttcg tgtgtattgt gtgtagatgg caacaaaacc aagcgtctgc gacaatttct       600
     atcagctatc gtttaatttg tgtatcatca tgcttttaca acaggtcagt gtatcgatat       660
     taccaatctc ttcacatgag ctacataagt tttatatttc gcagcatttt cgattcggat       720
     agcgttcgga catcatgttt tccgtccacg gctgcagcta acctccatgc taaattgatg       780
     gaagaaaccc atggaatgaa tgaaacttat gtgatacagt gacaatatgc agcggcaaaa       840
     cgattaaatg tcgaataaaa gcattcgtgt tgcatttatg catttattcc atgaaataat       900
     aacacccatt gttgtaactt aacgaagatc tagaaaattc gtatagaaag agaaacagca       960
     atacagccat ccctgtcgat attttcgtta attttgatct ttttcgttga aaataccggc      1020
     taaattttaa attttaacga aacattgacg aagccaggaa ngcgttacgc agtgttttaa      1080
     gccccgaaat tactgctgta tggaaagcta aaagtaatac ttttaggcat acttttaacg      1140
     gtttcttaac aggattgtgc tacttggg                                         1168
//
ID   Clu-137_AG  repbase;    DNA;    INV; 1175 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-137_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1175
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1451-1451 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD. >96% identical to consensus.
XX
SQ   Sequence 1175 BP; 379 A; 187 C; 191 G; 414 T; 4 other;
     cccaagtagc cttaagaaac tctatttgat tattaacagt tttttaaagc cgttaaaaat        60
     caaatagagt ttcttaagag aatatgacat ttgccagcgt tacagcataa cgacgtattc       120
     cgttaccctc gttttttttt tattcgggtc aatataacac acagtgtttt tcaaatttta       180
     tctacaccat ttccaattta ttcaatattc gaaaaatcat tttccattat tatttatata       240
     ataatgcgta tttattttca caccaaaata tttgttttgc ttaactgtac gaaaactatg       300
     tgttttcttt tattcctcta cttgaatctg cggtnataat aaaaaaagaa tttaaaaata       360
     aaaaaaaatt catagttttt aagtaataca tgtgaagagt ttgataaagg gtatgcaata       420
     ttngcaaatg agaaaaatct tcataaaaat atttattttc ttgggcaaaa taatatgctc       480
     ttgatgacga taatttttga gacatactgt acatggtcac gtacatggcg cctccatttc       540
     ttatgtcaaa aagttcgtca agcttcgtgt gtgtagcttg tgtgtagatg gcaacaaaac       600
     caagcgtctg cgacaatntc tatcagctat tgtttaattt gtgtatcatc gtgcttttac       660
     aacaggtcag tgtatcgata ttaccattct cttcacatga gctacataag ttttatattt       720
     cgcagcattt tcgattcgga tagcgtttgg acatcatgtt ttccgtacac ggcagcagct       780
     gacctccacg atgaagattg acgaaatccg cgtaatgaaa gaaaattgtg tgatgcggtt       840
     accnagtgaa attgtgtttt tattcaataa acgaataagt gttttattta ttaatttatt       900
     tcacgaaaat ataagcacat taagcttaac gaagaccttg catgtcccta acgaaagaga       960
     aagaaaaata tagccatctc tgtcgatttt ttcgttaatt ttgatctttt tcgttaaaaa      1020
     taccggttaa attttaagat ttaacgaaac attgacgaag caaggaaagc gttacgcagt      1080
     gttttaagcc ctggaattac tgctgtatgg aaagctaaaa gtaatacttt taggcatact      1140
     tttaacggtt tcttaacagg attgtgctac ttggg                                 1175
//
ID   Clu-13_AG   repbase;    DNA;    INV; 946 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   18-NOV-2015 (Rel. 20.11, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Clu-13_AG.
XX
NM   Clu-13_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-946
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1437-1437 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 946 BP; 306 A; 162 C; 180 G; 298 T; 0 other;
     ggggaaagcg gggcaaaatg ggcatgtggg gcaaaatggg caccctctat ttaagcatta        60
     tttgactaca aagatacttt ccaatgctca aaatgtattc attagagtgt tctatgaaca       120
     ccatgtaagt ttcataaccc ttacataaca aataaccaag aaaaatgcaa aataaggttt       180
     agcagcatat tgatgtaatt tttgccactt cgaaaataag cttaaaccag tgtcacaggg       240
     atgcgttgaa gttttacatg atatattttt aaagatatga tatttctata caatttgtct       300
     gaagaaagca aggcgattga atgcgtattt ttactaatat aacaaaaaat acaaaaatgc       360
     ttcacgtggg gcaaaatggg cagttacgct tggggcaaaa tgggcagatg cttttgacat       420
     acggcgcttg gtgaggctat ggtgttgtat ttgtcgcctc aataatgata acaggcacag       480
     cttcaaaaga ttcgattttg tagatttaaa cgtgtaaaaa ctgttttaat tttgataaca       540
     tatttttgga agaattttaa gggcttttct gaccagcaaa acaaaagata gaacgaaaaa       600
     tacatttcac gaaacgtgcg caaaagcata gaccattacc taagcgcagt tgttgtggcc       660
     catattgccc cagtgttttg acgtttcaca gtttgtttac atatgcccat tttgccccag       720
     ggctatgccc attttacccc gcgtgtcaaa atagcttctc gtaaaacatc aacttttatt       780
     ttacattatt ttcatgtttt taagttgttt tcattctatg tggcaatttt aatccataga       840
     taaatggtgg aggcatacaa taatgaaaga aaaattgtgt tttgtggcat attcaaagga       900
     atattcagta aactgcttaa catgcccatt ttgccccgct ttcccc                      946
//
ID   Clu-15B_AG  repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-15B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-460
RA   Jurka J.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1438-1438 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. ~94% identical to consensus.
XX
SQ   Sequence 460 BP; 134 A; 91 C; 89 G; 145 T; 1 other;
     tacagggttt tcaatgatat tattgacatg ttcagcgagt tgttgattcg ttcgggcata        60
     taattgacac tttcagcgag atattgaatt gttcgnaagc aggcgttgac atgttcggcg       120
     attctgtagt gctgtcgttt gttttgttta cacactgtgc cgcagggttc aatttttcat       180
     tcttagaagt cctaaaagta gctaataatc attccccaag ctgtttaata catgaattag       240
     ttaaaacaaa catattttta cgaaaaccgt ttgtttacct tctgatgaga atgatccaag       300
     ctgcagtcca aggggtacga aagtgacagc tctatagtat cgccgaactt gtcaacgcct       360
     gcttccgaac aattcaatat ctcgctgaaa gtgtcaatta tatgcccgaa cgaatcaaca       420
     actcgctgaa cacgtcaata atatcattga aaaccctgta                             460
//
ID   Clu-15_AG   repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-15_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-460
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1439-1439 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >97% identical to consensus.
XX
SQ   Sequence 460 BP; 141 A; 88 C; 85 G; 145 T; 1 other;
     tacagggttt tcgaggatta tatagacatg ttcagcgagt tgtagattcg ttcaggcata        60
     taatagactc tttcagcgag atatagaatt gttcggaagt aggcgtagac atgttcagcg       120
     attctgtaga gctgtcattt gttttgttta cacactgtgc cgcagggttc aatttttcat       180
     tcttaaaagt cctaaaagta gctaataatc attctccaag ctgtttaata cataaattag       240
     ttgaaaaaag catatttttt cgaaaaccgt ttgtttacct tctgatgaga atgatccaac       300
     ttgcagtcca aggggtacga aagtgacagc tctacagtat aaccgaacat gtctacacct       360
     acwtccgaac aattctatat ctcgctgaaa gagtctatta tatgcctgaa cgaatctaca       420
     actcgctgaa catgtctata taatcctcga aaaccctgta                             460
//
ID   Clu-166_AG  repbase;    DNA;    INV; 1670 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-166_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1670
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1452-1452 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >94% identical to consensus.
XX
SQ   Sequence 1670 BP; 504 A; 328 C; 292 G; 542 T; 4 other;
     tacagtcagt ccaaaaagta ttcgtctagc tgaatatttt gcagaaaaag gcgaattatg        60
     gccgcaatag gcatggggtg gtaaaagtaa tcatggggtt tgataaaggg accatcaata       120
     cacacgttct gctaaaaaat aagcattaaa atagtgcaat aacaactaaa ntacttaaaa       180
     aactaaaaaa agtcgtttga tgggcgcgca aaaagtattc gtctatcaga cttttggcgt       240
     aatatgcgta tgaaaacaaa ggttatggaa tcaaaaaatg tcctgatctt gtttcttatt       300
     gcatttatga ctattggtga ctacttgcac aacgcaagaa ctcatttgaa cctttaaaaa       360
     ggcgtatttt tgatccactc atcctacaag acttgttcca attattctct ggtagaaata       420
     ttgcatttcc ggactacgtg gccaagttcc attgaaaaaa tggcaactga tatcatattg       480
     agagtctact aaatcatttt catcagtttg gtttcagctg gtttggcgtt tcgggcaaat       540
     gacaatgccc tgtatgttct ccagctcgac tgttcttgaa acatgtgata cattttaagt       600
     anaatttctc agaactggga ctcaaagtac ttaaaaactg cattaatatg tttccccatc       660
     tcgtctccta tcantttgaa tcatttttct agctcacctt ncctcactga gccctagtat       720
     catgactcca tggtgctacc gttacacgag attttgatgc tgcatcttag tagactgttt       780
     tcgctacggt agacgtcggc cgtatgacct tggcgattta aacatgtttt aatatgttag       840
     tagagcctaa tttgaaacaa attcctgaat tatttgatgc accttaacag atttggccac       900
     tttctgtgta tggtattatt caaacaaaac atgtttgtaa caactcactc attcaagcta       960
     ttacatgacc agctacgatg aaatgcagca tgacccatca accaaatgtg acccatctct      1020
     tttcctgatc ttattggcca tcacaaaatg cactgattcc ttggtaaaat ttgatttttt      1080
     ggacattaaa ccgcttcttt cgttagatta accgtcaagg atggctgctt acatggcagt      1140
     ttgtcacaca attagtgtca gaaaaatggc caaactctga tcaaatgaag gaacgaggcc      1200
     tcccacacat tttgtaacct tcaaaaatgg gtaggatagg ttatgcataa gttaaagata      1260
     cgattttcgc catcatgctc caatcattta actcccccgc ctttagtgcc tctctgaccg      1320
     cttgaagtgc aattgaaaca acagaaatgc attattttag aaggaagtca ccagtagatt      1380
     gataataata aatttaattc acgtctacgt agtgtttgtc cagcgtaaat aattaaaaag      1440
     ctagatggac gaatactttt tgcgcgccca tcaaacgact ttttttagtt ttttatgtat      1500
     tttggttgct attgcactat ttaaatgctt attttttagc aaaacgtgtg tattgatggt      1560
     ccctttatca aacctcatca ttacttttat cgccccatac gtattgcggc cataattcgc      1620
     ctttttctgt aaaatattca gctagacgaa tactttttgg actgactgta                 1670
//
ID   Clu-168_AG  repbase;    DNA;    INV; 1412 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-168_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1412
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1453-1453 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >92% identical to consensus.
XX
SQ   Sequence 1412 BP; 477 A; 256 C; 251 G; 428 T; 0 other;
     tagggtaagt gtaccaatta tggctataat atgtcatcaa gataccgatt ttacgcctgt        60
     aaaaataagt atgggtaaaa tttcaaactt ctttatgttt tcttgtagcc tacaatgtgt       120
     agaacacgag ggtatttttt attttgactc agtgtttatc gaaatataga aaatttcaat       180
     taaaattgca tctcaaggta ccaattatgg ctatagtgtt cctagcaatt cgccatagct       240
     gtaccaattg tggctgtatg ctaaaactcg tggatattta caccaaaaat tactttgtga       300
     cattgtttta actgaaatca agtaataata agttcactgc accaatataa gtatgtaacc       360
     accattaaat acgtaaaatt aacattttaa aatatccgtt ttctatcact ggttgtattg       420
     atatccacgc tcaattaatc gcacaattga tgaggctaat cctaaaaaaa tactttcgta       480
     cacctttctg atgacaccgt gcttggacac acacctgaca atccttcata tcacctggaa       540
     gctataccga agccagctac cgtttcagcg cgatacgaag aggagcacaa atcagggtgg       600
     tctgtttgaa tttgtttaaa tgaagaatcg tagccatagt tcaactatct tctggccaag       660
     atacttccgg ccaagactag cactaactat cgatcaggga agaacaagag cgcatttggc       720
     aataaggcga cacgagcggc ttcagatttc gctttcttcg tatgaaagtc attcaagact       780
     gcattatttt ggtgaaactg attcgatttc attccactga ctattccact gattactgat       840
     tcgaacactt tacaaataaa tgatgcttaa aacacatatt aacactttag attgcgaaaa       900
     taacaacgag aaacccgagt tgttcacttg taaactacgc gctacgacca aaacgacagt       960
     tgtcaacaaa gcatccatag catactgcga tatttggtac accgaaggtt agttgtacca      1020
     attatggacg tacagaaaaa aggcatattt tcgatgaaat tttggtagat tttgatgtgt      1080
     agtcgttaaa taactaatat tttgcaccaa aatgatgatt ttgagataaa attatggtta      1140
     ggtgcttgaa aatcgctaat atcctacagt gctgctctta gcaaaatggt aagagatacc      1200
     aaaaatcttg gcaacacatt ttaaaagggt gatatttaac aaacggaagt gaccagcacg      1260
     gaactaatga agcacaaatg tgttaaaatg ttcataattg aaatgaaaaa tccttccgtg      1320
     gttttagaat gcaaatagac tgttttagag cgaaaatagt gttcgttata gccataattg      1380
     gtgctatagc cacaattggt acacttaccc ta                                    1412
//
ID   Clu-186_AG  repbase;    DNA;    INV; 737 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   16-DEC-2015 (Rel. 20.12, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Clu-186_AG.
XX
NM   Clu-186_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-737
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1454-1454 (2010).
XX
RN   [2]
RP   1-737
RA   Bao W.;
RT   "Reclassified.";
RL   Direct Submission to Repbase Update (15-DEC-2015).
XX
CC   3-bp TSD. >96% identical to consensus.
CC   [2]: classified to Zator group.
XX
SQ   Sequence 737 BP; 244 A; 119 C; 153 G; 220 T; 1 other;
     gggggcgtcc ataaattacg taacgctcaa agggggggga gggggttccc tgtagcgtta        60
     cggtttgtta cataggggag agggggggtt cacattctgt tacgtaacgt aatacaatcc       120
     tatcactggt cactgacaaa tgatcgccca cctgggtaag ttttgcactt ttatttcttt       180
     atatcttttg atagggaata cgttttgcta aacgagcatt tgagaatgca tgctagccaa       240
     ggagaaggga aaaaaacctt acttcagaac aaaagaatga tgataggttt aaagaagtaa       300
     tacacataca taatgaagat gccatatgga atgaagaaga tgccaatgta atcgaaacag       360
     atagtgttcc catcataaac attactgaac aattgaagcc aatctggcaa gatgtctaaa       420
     aatgctcaac atatatatta tgcgtttctt taattataaa ttttttatct aactttcctt       480
     tcattaatta aacattaatt ttaattaaac attaattaaa acaactctgc atactttata       540
     aaagcaatca aataaaaaaa tataaaccca natttttttg tatttgttga tgcaaaacca       600
     aattaagggg gggtgttcga tcatgcgtta cgtaattttg gaaggggggt ctcctccaac       660
     gttacgtttt gttacgatag ggggggaggg ggtcgaaaaa tcccaatttc agcgttacgt       720
     aatttatgga cggcccc                                                      737
//
ID   Clu-240_AG  repbase;    DNA;    INV; 1558 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-240_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1558
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1455-1455 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD. >93% identical to consensus.
XX
SQ   Sequence 1558 BP; 423 A; 368 C; 304 G; 451 T; 12 other;
     cccaaccgac attgtcgcgt tgcgagcggt tttttttgta tagaaaaagc gttctctata        60
     gcgcggtcaa atcgttctcg atagcagaac tatagagaag gtttttgaaa tcgtgcgaca       120
     gcgtgtatca tacatttggt ttctgtatgc tacatcactg ctcaatttct ttcattctct       180
     ccattctccc tacaaagact cttactctca tttgtccatt ccgcacatgc ttacgctctt       240
     tattttacct tcttactcgc acatacacat ttacatactc acacaattca cactgcctaa       300
     aaccggtgcg ggatacacac gtacccgtct tgcctgcctt ctctcctcgt tcttcctttc       360
     ctccagcttt gccttcgtcg aatggtgtgt acgcgtcctg cttgcctccc tctcgctgct       420
     cccacgtgct gcgctagcgn gctggatgnt cgtccctacc ttcctgccgc ttctcctcta       480
     ccaggcgcta gcgcgttgga ggatcggatc gttcctgcct tctttcctct cctgttctgt       540
     tttcggcact cctagggata gagggaaata ttanctattt tgccaacagc tgttcaattt       600
     aacgcgaagc acgatactta ccaaccaatt gaatattgct tctgtcgtgg tccgtgctca       660
     cttccgttcg tgcgtgtgtt acgatttctt anagaaaacg aaattgattt tatatcacca       720
     attatcaata caattcagtt tgataaagat tgatataacc ctttattaaa aactgtactt       780
     accaaatagt ttttccgtac tggtttcacg agagaaaaaa cgggcacgca ccgacgcgtc       840
     ctaccgcttg caaacttgat ttcacactac cacattttca tgtgaacgcg aagcagcgcc       900
     ttcctcgtgt ggctatacag gtattccccg atatacgcca tactcgatat acgcgatttc       960
     gctatacgct ttttttctaa atttgacggt tctttgagca agtngtacta atttgagaaa      1020
     tcgaatgtca aatgcaaaat aaattccctt ttggtcgaat attaaaaacc atttcaaang      1080
     gtataaaatt gnaanattca gttgaaatca gatcaaataa ctaatttagt ggctaaaacc      1140
     taccacttca tgcaaaatta tacgaaaatt agctataatt tgactgaaaa cctcgaaatt      1200
     cgacnttcgc tattgatatt cgagatacgc tattgcctcc ggtccgcatt gatagcgtat      1260
     atcggggagt acctgtacga tgatacaaag agcgggcgag aggagancgc ttgcgtgaac      1320
     gcttggtgta gcaagcgaaa ttggacaagt cccagaaaag cgagacgcaa gagtttctct      1380
     ccaacgatgg aaagggaaga gccatatgaa acatgaggat ggttggtgcg acacagccaa      1440
     gtcgcgagca aaaacngacc aacacccaga agagcgaggc agaatgaaaa attttntgaa      1500
     tgttagaatg agaaaaatga tagatacaca taaaaatcgc gcgataatgc tggttggg        1558
//
ID   Clu-38_AG   repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-38_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-422
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1440-1440 (2010).
XX
DR   [1] (Consensus)
XX
CC   3bp TSD. >96% identical to consensus.
XX
SQ   Sequence 422 BP; 140 A; 82 C; 79 G; 121 T; 0 other;
     aggcagcggt ctaatcttgt tgcgcgcaac attgttgctc ggcaacatat cgctgaggtg        60
     gtctatgaat gttgctggca acatttcgct ttgacattgt ttagcgtaaa aaattgccaa       120
     ttaacagctc agagtttatt ttttatcatt cacttgttga ataaagtgtt gaaaaaataa       180
     aatatacacc aaaaaatgta ttataaatgc ttaaaatcca aatttagcgg atgtcaacaa       240
     aacgcacact gctgctgtgt catttcatac acccgattac catgaccaag gtaaatagaa       300
     aatgttgcca gacaaaaatc aaattggttt gaatttggcc ggcaacaaag ttgcgctagc       360
     tgtcaaaatc catacatttt gccagcaaca atgttgcgcg caacaagatt agaccagtgc       420
     ct                                                                      422
//
ID   Clu-39B_AG  repbase;    DNA;    INV; 1110 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-39B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1110
RA   Jurka J.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1441-1441 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >93% identical to consensus.
XX
SQ   Sequence 1110 BP; 390 A; 203 C; 183 G; 328 T; 6 other;
     tagggtaact gtaccagtat tcggcagtgt acctgttttc ggcagggtaa ctaaaaacgt        60
     gtaattacgc aaaaacgcgt tgaaaattgt ctcaacacat attttttaaa tagagatatg       120
     ctcatttgtt attcatatac gaagtttcac atcatttcct tgcatatttt tcaaaatatc       180
     aaacaaaatg tgcagagttc aacatgtttc ggcagatttg ctgtcagcca atagttcggc       240
     aggtttcatt attaagagaa ccagagcact aaaacaatga aagtgtggtt tttatgaaag       300
     attctatggt tgcaganttt atnctagccc gcttggaatt ttaaaatcac taaaaacaag       360
     taattattca ctttaaatgc tgccgaaaat nggtacacgg taaatgttga tttttgacag       420
     atcaatgctg tgggctcctg ccgaaacttg aaacaaaaac acacttttga tttcgttgaa       480
     tattcattta aaacttgatc agaanactgc aatgcgtatg tcgacacata aaaccacatt       540
     tcttgtatca aatatcacca atttcactat aaatnatcca ataacttgag agaaaaataa       600
     taatttgtga gccagtcgga gccgtactct atagccgtca ggcagtctca tttctccaat       660
     gcctactttg tttgtaactc acatcaaagt gactgtaaaa attgccagca aaatgcccaa       720
     aatgggcaac ataaaattaa taatttaagt acttttcaac accaatctta ggaaagtgag       780
     agtgtaaaac tgttttaaac atttttgtct acctattggc attaattaaa acatttaccg       840
     acccgtattc gcgttgccga aaataggagc acagcctgcc gaaaatagga ccaaactgcc       900
     gaaaatagga acaaaaacag tgtttgcatt ttcacgaata tcgctagaaa atgcatttga       960
     aacggcaaat aaaaaatagc acaacataat acgatagttt atcgttcaaa ataacgtcac      1020
     tttcatgaaa agtaataaaa attgtaagtg tacgagcagt tttngtgaaa ctgctgcact      1080
     aacctgccca atactggtac atttacccta                                       1110
//
ID   Clu-39_AG   repbase;    DNA;    INV; 1080 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-39_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1080
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1442-1442 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 1080 BP; 386 A; 189 C; 176 G; 329 T; 0 other;
     tagggtaact gtaccagttt tcggcagtgt acctattttc ggcagggtag ctaaaaacgt        60
     gaaattctgc acaaatgcgg taaaaaattt cacaaaatac aattttgtag tgaaagtgta       120
     cttatttgat attcacatac gaagtttcac accatttcat tacgtatttt ccaaaatatc       180
     aaataaattg tgcttttttt cggcagcttt gctgtcagcc aatcgttcgg caggttttgt       240
     gattaagaga atcagaacag taaaacaatg aaaaagtggt gtatattaaa gattttatgc       300
     ttatttaatt tattctaact tgttcggaat tttaaaatca cgataaacag gttatttttc       360
     actttaaatg ctgccgaaaa taggtacaca gtaaatgttc atttttgaca gctcaatgtt       420
     gtgggctcct gccgaaactc ggaacaataa cacactttga atttggctga atattccttt       480
     taaaattgat cagaacacta caatgcgtat gtcgacacat aatatgacct ttcttgtacc       540
     aaatatcacc aattttacga caaacaatgc actaacttaa gagaaaaata aatatttgta       600
     agccagttcg caccgtacgc tataaccatc aaactgtcaa tggctgctct gtttaaacgt       660
     cgcatcaaaa tggctgtcaa aacgggccaa aataagcaac ataaaattaa taattaaagt       720
     gctttttaac accaatctta ggaaagtaag agtgttaaat tgctttaaac atttttttgt       780
     acatattcac attgatacaa acattttctg acccgtattc gcgctgccga aaataggaac       840
     acagcctgcc gaaaatagga acaaactgcc gaaaatagga gcaaaatcaa tgtttgcatt       900
     ttcacgaata tttatgaaaa agggctttga accggcaaat aaaaaatatt gtaacatact       960
     atgatagttt atcaaccaga ataacaacac tttcaagaaa aataatgaaa aatattgatg      1020
     tgtgagcaat ttttgtgaaa ctgctgcact agcctgccga aaactggtac agttacccta      1080
//
ID   Clu-44_AG   repbase;    DNA;    INV; 555 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-44_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-555
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1443-1443 (2010).
XX
DR   [1] (Consensus)
XX
CC   TTA TSD.
XX
SQ   Sequence 555 BP; 176 A; 99 C; 121 G; 159 T; 0 other;
     gagagcggta cttgttccga cgcaatgcgt tgcgattttg ccaaaatgta tgggatttga        60
     cagacgcatg cgttaacgac gcacgacgca gcgtcaaagt agaaaaattt ctatttcgac       120
     gcacgtcgtg atgcgtctgt caaaatggtt taaccatatc gggtgaaaat cgatattttt       180
     tcacgttaaa ttgtttcgag cgcagtttcg cgtgtaattg gactactaaa taattttatt       240
     aacaaaacaa aataaatgta gagaaagtaa tttcgtaatt gctgcaaaac aggtgtgtgc       300
     gggtcagtac gcaatatgca ataaaaaagc gaaaacatgc tttgcactgt tttgagcaga       360
     actggaaatg attttacagt tgtaatttaa cattataatc acatcagaac ctataaataa       420
     gaggcattat tgctgtttgt tgatgttttt ctttgtaaaa tgtgttgaca tatccatgca       480
     gaacgcagcg aacagatacc agcgtgcgtc acgcaatgcg ttgcgatacg ctgcgtcgaa       540
     acaagtacca agccc                                                        555
//
ID   Clu-47B_AG  repbase;    DNA;    INV; 1195 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-47B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1195
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1444-1444 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD. >96% identical to consensus.
XX
SQ   Sequence 1195 BP; 309 A; 263 C; 319 G; 304 T; 0 other;
     ccctactagc aatgagaatg taaaagtgtg cgtctttcag gcgaggggca tgtagaagca        60
     gggggagacg gttggaaata cgcggaatta cgcggcggcg agagcgtgtt ttgctttcta       120
     cacagttttc gcactcacac aatcacacat gtgtgaatgt gtgcgttcac tttcagccag       180
     cgcgctcagt ttggttttct cgcagcggct tgctggtgtc ggtgtctcgc tcgcactagt       240
     gcagcgagtg ttcctcgtgc gttccctttc ttgctaccac acaaaatcgt cagtacagtt       300
     caagccttcg cagtgtgagg ccgcgcgcgt tttagcctaa gtcccgggcg ctcgatgtaa       360
     tttgaagtga agtgttgaag tgttatttat ttcaattcac attattacgg cctcggccgt       420
     attttcaagt gttgaagtgt tgtgcgcatt gaaataaagc agcgttaatc tttcataatt       480
     caacatgaat atgtaaatta tgctgcttta tttcaatgct ttttttacag tattcaacat       540
     acacaacata caggcagtaa ggcgggtgct tgaagtgacg atttttttaa ttatttataa       600
     taaaaaatat gtgtggtttt gtggcaagat tgtggttagc gatgtgtgga actgtgcctt       660
     aagtttcaat aaagtgttaa aatatcaaac gagtttgatg tgtttaagtt ttatttcgat       720
     gcatgcgatt ttattacgca gcaaatcaaa gtgaacgaaa gcgcacagcg cacaacgcgc       780
     aacgaaagaa acgaggggga gggggtgtcc agcgcacgcg caaagtgcgg caacagcgca       840
     gcgcaaaccg aaaagaacgc gcgggagggg gtgttcagcg cagcgcgcaa gtgcggcaac       900
     agcgcagcgc aaaccgaaag aaacgcgaga gagcaagaac agctgatccg cgcatccagc       960
     gcagcgcgag aggaaaaaaa cgggagggag ggggtatcag ctgatcagct gttttgtatc      1020
     gcgagagcgc cccgtgtaat ttgaaggcag cgagagagcg ctgcgcgcgc tcactctcaa      1080
     ttcggaaaaa aatcactgcc gctcgactat ggcggccaat acaaatcgac cgaacccctt      1140
     ccccctgttt ctacatgccc ctcgcctgta aatttcgctc tctttgtctg tcggg           1195
//
ID   Clu-47C_AG  repbase;    DNA;    INV; 938 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-47C_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-938
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1445-1445 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD.
XX
SQ   Sequence 938 BP; 257 A; 196 C; 224 G; 257 T; 4 other;
     ccctacaaac aacgagcggg atattttatc atggtgtgtg taaaaaccta gagttaagcg        60
     gagaatcggt gtgaaataca cggaggcgag agcgcgtttt ggtttcgaca cagttttggc       120
     actaacacag ttacacatgt gganatgtgt gcgttnactt tcngccagng cgctcagttt       180
     gatctgctcg cagcgctgtg ctgatgtcgg tgtctcgctt gcactgctgc accgaaagtt       240
     cctctgtgtg ctctcgttct tgctaccaca cgaaatcgtc agtacagctc aaggatcggc       300
     agcgagcggc cgcacgtgcg tcagcctaag tcctggacga ttgatgttat gattttgtaa       360
     agtgttcaag tgttcaagtg ttgtgcgaat tcaaatgaag ctgcgcgaat gattcgtaat       420
     gcatgttatg tacatcgcgc agcttcattt cgtacctttt tacagtaatc aacgtgtaca       480
     aaaggatcta cacagatatt cggccatttc aacgtttgca tcgatggagc gatcaatttt       540
     attttagtca aatattgtgt atcaacttac gtaaatgtgt gaaatcgtgt aaagttaaaa       600
     tgtaaatgtt tcaataaagt gatgaaaaaa agatctacgc gtgtttgttt ttttgtttag       660
     ctttagataa caaaaaaata cgcagcgagt gtgagcgatc gctgaacgaa agaaacgcac       720
     acagcgcaac acgaaagaaa caaacacaag cacacgaaag gatgctcgcg catgggcgcg       780
     agcattgaga gagcgcaccg tgtattttgt atgggagcgg gagagaaccg tgctacccgt       840
     tcccgccccc ttttttaagc ctaggaaatc ttccatcggc ttaactctag gtttttacgc       900
     acaccatgat aaaaattacc cgctctttgt ccgtaggg                               938
//
ID   Clu-47_AG   repbase;    DNA;    INV; 1048 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; Clu-47_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1048
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1446-1446 (2010).
XX
DR   [1] (Consensus)
XX
CC   2 bp TSD. >97% identical to consensus.
XX
SQ   Sequence 1048 BP; 246 A; 232 C; 286 G; 280 T; 4 other;
     ccctactagc aatgagaatg aaaaagtgtg cgactttcag gcgaggggca tgtagaagca        60
     tggggagacg gttggaaatn cgcggaattg cncggaggcg cgagcgtgtt ttggtttcta       120
     cacagttttt gcactcacac aattacacat gtgtgaatgt gtgcgttcac tttcagcctg       180
     cgcgctcagt ttggttttct cgcagcggca tgcgggtatc ggtgtctcgc tcgcactagt       240
     gcagcgagtg ttcctctgtg cgctcccctt cttgccacca cacgaaatcg tcagttcagc       300
     tcaagcgttc gccgtgaaag gctgcgcgcg tgttagccta agtcccgggc gatcgaagtt       360
     tcgctaagtg ttgaagtgtt gtgcacattg aaatgaagct gcgcttttct ttcaccattt       420
     atcctaaatg tgtgatttgc gctgcttcat ttcaatgttt gtttttgctg tatcgaacat       480
     caacaacggg atccacgcag ttaggcggct atttnaaata cggcgatttt ttttatataa       540
     agaatgtgtg tgattttgtg gcaagattgt gtgaagctat gtgtgaaaat gcccctttat       600
     ttgcaataaa agtgataaaa tataaaccaa gtttgatgtg ttcaagtttt tgttttgatt       660
     cgggtgcacc aagtccgaat gaagggaagc gcacagcgcg ctacgaaaga aacgagcggg       720
     agggggtgtc agtccagcgc agcgcaattc gctggaatca agtgggaggg ggtaccagtt       780
     cagcgctgcg caagccgaaa gaaacgggaa ggaaggggta tgaggaaaat acgatgaaac       840
     agcgcgagcg agcgttcttt acagcgagag cgcctcgtgt attttaaagg caagcaagag       900
     agcgcattct ctccgtggta gcgctccatc cgccattttt aatttcgagc ccaaaacaac       960
     ggacttcgga tccgancttg ggccgggccc ccaccgcgtg tttctaccta cccctcgcct      1020
     gaaaatttcg ttctctttgt ctgtcggg                                         1048
//
ID   Clu-87A_AG  repbase;    DNA;    INV; 902 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-87A_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-902
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1447-1447 (2010).
XX
DR   [1] (Consensus)
XX
CC   8bp TSD. ~92% identical to consensus.
XX
SQ   Sequence 902 BP; 330 A; 135 C; 121 G; 314 T; 2 other;
     ggtaaaagta aggctcagcc ctctacgtta cgctagcgtt acgcgtaacg cctgtttatc        60
     acaaacccaa gcagcatttt tgaacgcctg ttttaaccgc cgtggatgag caaattaata       120
     gattatcatg tcttaatatt gcttattttt acatgataat tagaaaagca acaatttttg       180
     aacaaacata aaaaagtacg gcaatcgcta ataaagataa aactcattga taattcatga       240
     gtataaataa attataatat tactattagg ctatcatttt taacagcaat cagagttgta       300
     acaacttcaa gtattataat taataacaat cttatacata aaaaagggtt acttataaaa       360
     aatgattatt tatttatttn cccagctatt gataaagcag gataatgaaa tacatacaag       420
     tatttattaa cttcattaac ctaactttna aaaagagccc tcgcacctaa agtaatgttt       480
     attcaaaatg gccggaaaca tagattgaat aggtaataat tatatttcat atatataatt       540
     tatttataaa tatttttaat attttatatt ttctaatcat aggaaatgtt actccaattg       600
     aaagcttttg gggtgtttat gaacttcctt ctttcagact atttttcata aatcatagtg       660
     caacaatgaa aaatattaaa cctgttattt acttgttatt taaaaattaa atctcgtaga       720
     aatcgattca tcttaaagca attaactttt tttcatcgca atttaaaata ttttttattc       780
     aaataatgta cactggtcgg tcgcctggat gacaaaactg taataaaaat gctgcttggg       840
     aatattttaa gggacgtaac gcttctccaa tgtaacgtag agggctgagc cttactttta       900
     cc                                                                      902
//
ID   Clu-87B_AG  repbase;    DNA;    INV; 851 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   03-SEP-2010 (Rel. 15.09, Last updated, Version -1)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Clu-87B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-851
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1448-1448 (2010).
XX
DR   [1] (Consensus)
XX
CC   8bp TSD. ~94% identical to consensus.
XX
SQ   Sequence 851 BP; 298 A; 126 C; 114 G; 313 T; 0 other;
     ggtaaaagta aggctcagcc ctctacgtta cgctagcgtt acgcgtaacg cctgttaatc        60
     acaaacccaa gcagcatttt tgaacgtttg ttttaaccgc cgtggatgag caaattaata       120
     gataatcatg tcttattatt gtttactttt atatgataat tagaaaagct ttgttgataa       180
     ttagaaaagt tgtcacaact tcaagaatta taattttaac aatcttataa ataaaagatg       240
     taaataataa aaaaatgatt atttatttat ttacccagtt attgataaag tagtataatg       300
     aaatacttac aagtatttat taacttcatt aacctcgttt taaaaagagc cctcgcatac       360
     ctacaagtaa tttttattaa cttcattaac ctcattttaa aaagagccct cgcatctaaa       420
     gtaattttta ttcaaaatgg ccggaaacat agattgaaaa ggtaatagtt atatttcata       480
     tatataattt aattaaaaat attttaatat tttatatttt ctaatcatag gaaatgttac       540
     tccaattgaa agcttttggg gtgttcatga gcttccttct ttcagacttt ttttcattaa       600
     tcataatgca acaatgaaaa atattaaacc tgttatttaa ttgttattta aaaattaaat       660
     ctccttgaaa tcggttcatc ttacagcaat taactttttt ttcatctcaa tttaaaatat       720
     tttttattca aataatgtac actggtcggt cgcctggatg acaaaactgt agtaaaaatg       780
     ctgcttggga atattttaag ggatgtaacg cttctccaat gtaacgtaga gggctgagcc       840
     ttacttttac c                                                            851
//
ID   CMC-NA_GF   repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   08-AUG-2017 (Rel. 22.08, Created)
DT   08-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A non-autonomous element of the CACTA transposon from Glypta
DE   fumiferanae.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   CMC-NA_GF.
XX
OS   Glypta fumiferanae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Ichneumonidae; Banchinae; Glypta.
XX
RN   [1]
RP   1-166
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (08-AUG-2017).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 166 BP; 46 A; 32 C; 32 G; 56 T; 0 other;
     cacggagaga aatatcaagt aaatgttcct acgtagcata gtaacggttg cattcctcta        60
     tggtttgtgt cacgccgctc ttatgtgact gcttatacca actatataga gtaatgtaac       120
     cattactatg ctgcatagga gtatttactt gaaatttttc tccgtg                      166
//
ID   CMC-NA_MD   repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   08-AUG-2017 (Rel. 22.08, Created)
DT   08-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A non-autonomous element of the CACTA transposon.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   CMC-NA_MD.
XX
OS   Microplitis demolitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae;
OC   Microplitis.
XX
RN   [1]
RP   1-164
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (08-AUG-2017).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 164 BP; 49 A; 31 C; 30 G; 54 T; 0 other;
     cacggagaga aatgtcaagt aaatatgcct atgcagcata gtaatggtta cattactcta        60
     tagtttgtgt cacgccgctc ttatgtgact gcttatacaa actatagagt aatgtaacca       120
     ttactatgct gcataggaat atttacttga catttctctc cgtg                        164
//
ID   Copia-1-I_DY repbase;    DNA;    INV; 3967 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.02, Created)
DT   05-JAN-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   LTR retrotransposon Ty1-copia like, internal portion from
DE   Drosophila yakuba - consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1-I_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3967
RA   Bao W. and Jurka J.;
RT   "Copia LTR-retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 9(2), 475-475 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           312..3932
FT                 /product="Copia-1-I_DY_1p"
FT                 /translation="MEQIEGRTSAKRACTKGTRSSSTNGWSSMSTYISEFV
FT                 EILDGLAGVGIELNDELRTIVLLSSLPEQFEHFVVAMETRDQLPTFEILTI
FT                 KLKEESERKGIAEERIDNTKAFAATQRQNWQTKTYGQKKRKNIVCFRCGEQ
FT                 GHIKSQCRSASEGDSNRTVPKNLVNRQSSLLHACDVNNLQNSMWCLDSGAT
FT                 SHMCCARELFIKFEKHTEQIGLADAGFLQAEGIGDVKIQTELCMLTLKNVL
FT                 YVPKMTGNFMSVSSAVQNRCKVTFDLEKAMVVQDGECIVKAKKIGNLYLFE
FT                 GGRSGCFAMSAVDGILLHKRYGHINFSSMKELVSKGMVRGIENIGLPENIN
FT                 CKTCMVSKIHVQPFPRTTCNRAKELLELIHADVCGPFPTLSLGGSKYFLTF
FT                 IDDKSRRIFVYFLRGKNEVLSKFMEFKNLVERQTGKQLKCLRSDNGGEFVN
FT                 KQFDEYLRKYGIARQLTIPHTPQQNGVAERANRTLVEMSRCLLVQAGLGDS
FT                 FWAEAVNTSAYLRNRSPTSAVKSMTPMEAWTGKKPCVKHLKVFGSLAVALD
FT                 KGPRKGSKFQPKGKEYIMVGYSVAAKGYRLYDPAARQLVEKRDVLFDEHHA
FT                 AASKDDVVLINLEELDEPCQRDGAEVDETVSDISVDTGSADESIDQYESAD
FT                 DNEELVLEEARRGPGRPKIVRTGKPGRPKKQYNILGALVSENVPIPLTCKE
FT                 AVESSHAMEWREAMAKEYDSLVANQTWQIADLPKNQRAIGCKWVFNVKRDK
FT                 DGQIERFKARLVAKGCSQQFGVNYLETFSPVCRLESVRLMIALAAELKLYL
FT                 HQMDVCTAYLNSDLRETVYMKQPEGYIDEKNPDKVLVLRKAIYGLKQSGRA
FT                 WNEKLNSVLVDMGFISCNNEPCLYKQSGQGNLSLILVYVDDILIACQSHED
FT                 LVEIKNSISQSFECVDKGPLSHFLGMEIEREGDLGAITLGHSQYIKDLLRT
FT                 HGSELCKSAKTPLDAGFQIDCTSDKCKKVDPTVYQSVVGELMWLALTTRPD
FT                 ILHSVSKLAQRNQNPHAEHMAGIKHILRYLSSTVDVKLHYQQCGQSFCGYV
FT                 DADWAGDRLDRKSYTGYIYLLAGGPISWRSEKQRSVALSSTEAEYMALSAA
FT                 FKEAIVMRRLILEIGCGDDNTPIVVYGDNLSAQALTKNPVNHSXTKHIDIR
FT                 YHFVRDVVKEGKVLLKYKCTTEMIADILTKNLPKTKHELFTEMLNLY*"
XX
SQ   Sequence 3967 BP; 1181 A; 749 C; 1075 G; 960 T; 2 other;
     ggttatgggc ccaggcatta gtgaatttat tttggttaag cggtgtgtga ctcacgatca        60
     agaacaatga gtgctcttta tcaaattgaa aagttagagg agaaaaacta tgatacgtgg       120
     aaaatacaga tgcgatctgt attggtgcat tccgggttat ggagtgtgac gtcaggagag       180
     ctaacagcaa cgaacattcc agagggacac agctttgtgg ctttggacaa taaggcgtta       240
     gcaacaataa cactgagtgt aaagacatct cagttggcct acatcaagaa ttgctcgact       300
     gctgtggagg catggaacaa attgagggac gtacatcagc caagcgggcc tgtacgaaag       360
     gtacaagaag ctcctcaaca aacggatgga gcagtatgtc gacatacata agcgagtttg       420
     tggaaattct ggatggtcta gctggagttg gaatagagct aaacgatgag ttacgaacta       480
     tcgttttgct gtcgagtctt cctgaacaat tcgaacattt cgtggtggcc atggaaacac       540
     gagatcagtt gcctactttc gagattctga ccataaagtt gaaggaagag agcgaacgaa       600
     aaggaatagc agaagagcga attgacaata ctaaggcatt cgctgcaaca cagaggcaaa       660
     attggcagac aaagacgtat gggcagaaga aacgaaaaaa tatcgtttgc tttaggtgcg       720
     gtgagcaagg gcacattaag tcccagtgtc ggagtgcgag cgaaggagat agcaatcgca       780
     cggtgccaaa aaatttggtg aatcgacaaa gcagtctgct gcatgcttgt gacgtcaaca       840
     acttacagaa ctcgatgtgg tgcttagata gcggtgcaac aagccatatg tgttgtgcac       900
     gggagctttt cataaagttt gagaagcaca cagagcagat cggactggcc gatgctggat       960
     ttcttcaagc agaaggtata ggtgacgtca agattcagac agaactgtgc atgttgactc      1020
     ttaagaatgt tctctacgtc ccgaagatga caggaaattt catgtccgtg agcagtgctg      1080
     tgcagaacag atgcaaggtg acatttgacc tagagaaggc catggtggtg caagatggag      1140
     aatgcatcgt gaaagccaaa aagattggca atttgtattt gtttgaaggt ggtcgaagcg      1200
     ggtgtttcgc catgtcagca gttgatggga ttttactgca caagagatac ggacacatta      1260
     atttctccag catgaaagaa ctcgtttcca aagggatggt gcgcggcata gaaaatattg      1320
     gtttgccaga aaatattaac tgcaaaactt gtatggttag caagatccat gttcaaccat      1380
     tcccaaggac aacgtgtaat cgggcaaagg agcttttgga gctgatacac gcggatgtgt      1440
     gtggaccttt cccaacactt tctctgggag gttcaaagta ttttcttact ttcattgacg      1500
     acaaatccag gaggattttt gtttattttc tgcgtgggaa gaacgaggtg ctgtcaaagt      1560
     tcatggagtt caagaatctg gtggaacggc agacaggcaa acagctgaaa tgcctgcgga      1620
     gtgacaatgg cggagagttt gtcaataagc agtttgatga atacctcagg aagtatggga      1680
     ttgccaggca gctaacaata ccgcatacgc cgcagcaaaa tggcgtggcg gaaagggcaa      1740
     atcggacgct ggtggaaatg tcaagatgtc ttctggtcca ggcggggcta ggagatagtt      1800
     tttgggcaga agctgtcaac acttcggctt atctgcgtaa ccgatctccg accagcgcgg      1860
     taaagagtat gactcctatg gaagcgtgga ctggtaagaa gccttgcgtg aaacatctaa      1920
     aagtatttgg atctcttgca gttgctctgg acaaaggtcc gaggaagggc agcaagtttc      1980
     aacccaaagg caaggagtat ataatggttg ggtactctgt ggcagccaaa ggttatcggc      2040
     tgtatgaccc agcagctcga caactggtcg agaaacggga tgttttgttt gatgaacatc      2100
     atgctgcggc atccaaagat gatgttgtgc tgatcaactt ggaggaactc gacgagccct      2160
     gccagcgaga tggggccgaa gtcgatgaaa ccgtatctga catatccgtc gatactggca      2220
     gcgcggatga gagcatagat cagtatgaga gtgctgatga taatgaagag ctggtcctag      2280
     aagaggcacg cagaggtcct ggtcgcccca agattgtccg aactggaaaa cctggacgtc      2340
     caaagaaaca atataacatc ttgggcgctc ttgtttcgga aaatgttccg atccctttga      2400
     cctgcaaaga ggcggtggaa agttcgcatg ccatggaatg gcgcgaagct atggctaagg      2460
     aatatgattc cctggttgcc aatcaaactt ggcagattgc tgatttaccg aagaatcaga      2520
     gagcaattgg ttgcaaatgg gttttcaacg tgaaacgaga taaggatggg caaatagaac      2580
     gtttcaaagc tcgtctggtt gcaaagggat gctcccagca gtttggcgta aattacctgg      2640
     aaactttttc gccggtatgc cgactggaga gtgtgcgtct aatgatagca ctggcggcgg      2700
     agcttaagct atatcttcat cagatggatg tatgcacggc gtatctcaac agcgatctaa      2760
     gagagacggt ttacatgaag cagccggagg gatatattga cgagaagaat cctgacaagg      2820
     tattggtgct gaggaaagca atatacggct taaagcagtc aggaagggcc tggaacgaaa      2880
     agctaaatag cgttttggtg gatatgggat ttatctcctg caacaacgag ccatgtttat      2940
     acaaacagag cggacaaggt aacctttcac taattcttgt atatgttgac gatatactta      3000
     tagcttgcca atcgcacgag gatttggtgg aaattaaaaa cagcatttca caatcgtttg      3060
     agtgcgttga caagggtccg ttgagccatt tcctgggaat ggaaatcgag cgagaaggcg      3120
     accttggagc cattactttg ggacattcgc aatatataaa ggatttattg cgaacccatg      3180
     gaagcgaatt atgcaagtca gcaaaaactc ccctggatgc aggtttccag atagattgca      3240
     ccagcgacaa gtgcaaaaag gtggatccca cggtctatca atctgtggtg ggagagctta      3300
     tgtggctagc tctgacaaca agaccggaca tactgcattc agtgtccaaa ttggctcaac      3360
     gaaaccaaaa tccgcatgct gagcacatgg ctggcataaa gcacatccta aggtatctct      3420
     cgtccacagt tgacgtgaaa ttacattatc agcaatgtgg tcaatcgttc tgtggatacg      3480
     tggatgcgga ttgggcagga gataggcttg acaggaagtc ttacactggc tacatctact      3540
     tgttggccgg tggtccaatt tcttggcgtt cagaaaagca gcgaagcgtg gcgttaagca      3600
     gtactgaggc ggagtacatg gcactgtcag cggcttttaa ggaggcgata gtcatgcgaa      3660
     ggctaatttt ggaaattggc tgcggagacg acaacacccc gatcgtcgta tatggcgata      3720
     atctgagcgc gcaggcgtta accaagaatc ctgttaacca ttccaraacg aagcatattg      3780
     acatacgtta tcattttgtt agagatgtcg taaaggaagg gaaagttttg ttaaaatata      3840
     aatgtacaac ygaaatgata gcagatattt tgaccaagaa ccttccgaag accaaacacg      3900
     aattgtttac agaaatgcta aatttgtatt aaatataatt tgtaaacatg catgcattga      3960
     ggaaggg                                                                3967
//
ID   Copia-1-LTR_DY repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.02, Created)
DT   05-JAN-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   LTR retrotransposon Ty1-copia like, long terminal repeat portion
DE   from Drosophila yakuba- consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1-LTR_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-205
RA   Bao W. and Jurka J.;
RT   "Copia LTR-retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 9(2), 476-476 (2009).
XX
DR   [1] (Consensus)
XX
CC   The terminal is 5-TG, TA-3'.
XX
SQ   Sequence 205 BP; 64 A; 40 C; 32 G; 68 T; 1 other;
     tgtagaaaat agaggccctg tatatgccct gtatgtatac aatgcacgct tgtattaccg        60
     atcatagatt tatcccgctc taacgaatta ggaataagaa aatatgtata ataattttgt       120
     catttctttc gttcatcrtt tagtcgcaaa taaaattccg cagcgaacac acggtgtttc       180
     tcttataaaa ttctgccgct caata                                             205
//
ID   Copia-100_AA-I repbase;    DNA;    INV; 3345 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-100_AA_;
KW   Copia-100_AA-LTR; Copia-100_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3345
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1879-2406] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           632..3178
FT                 /product="Copia-100_AA-I_1p"
FT                 /translation="MKSQARTNAGAGVAEKTCFFCKKKGHLRRNCRLLQEK
FT                 QNKSGEEKQKGNPKAKQATMEHSNAVLFLAGEEQQESRWVIDSGASRHMTN
FT                 SKSLYTLFVKDDTPNVVLANGATVKSVGSGDCKLNGVSGCGGITEITLKDV
FT                 LFVPTLNSSLLSVAQLTERGFTVGFKRDGCEIVNVAGEVVAKGDRSGSLYV
FT                 LRISESAMEVQCKRHSEWCQHQWHRRFGHREPSVVEKMYKEKLCNGMVLKD
FT                 CGIRMTYEPCIEGKLSRTPIPKAATKKTKEVLDLVHTDLCGPMRTPTPSGN
FT                 RFLMTVIDDHSRYTVVYLLEKKSDAPDRLMEYVRYVETLSGRKPKVVRSDG
FT                 GGEYCNERLKSFFEREGIKAQYTTAYTPQQNGVAERRNRYLQEMATAMLLD
FT                 AKLDKKYWGEAVMTAAHLQNRLPSRSVDSMPFEKWFGWKPDLSYLKVFGCK
FT                 AWVHVPDTKRGKFDSKARKLTFIGYSEQHKAYRFVDLETEKVTISRDAKFV
FT                 ELEEEEAVSQPKTVSEPTDDEVNWMPLRNSAPADEQQDMNEAEDDSSEVDS
FT                 ECEEFFDMGSPQAFQEDPLAIKIEPSEEPVEQEDVPASVSKLATRKTRGKL
FT                 PKHLGDYEVGIATHAMKEPVNFNEATKSEQAKSWRSAMDDEYQSHMVNGTW
FT                 DLVDLPPGKKVVGSRWVYKAKLNEAGEVARFKARIVAQCAVCARPDIAASA
FT                 SILGRKFAAPTENDWTAAKRVIRYLKGTVDWRLKLGGVETNELVAYSDANW
FT                 AGDPQTRKSMTGFATFFAGGVVSWVSRRQDCVSLSFMEAEFIALGETCQEV
FT                 LWMRRLLEDLGESQLTATVVHEDNQGCLAFAQSEKINKRSKHVETKR"
XX
SQ   Sequence 3345 BP; 872 A; 699 C; 1042 G; 731 T; 1 other;
     ggttatgggc ccagtggaag ttgtgaagga atcgtgagtt ttccgtgaga aaagtgcgtc        60
     gttcgcgaaa gtgattttcg gttcggtcag tcgggaaaag tttgactttt gtttgcgtcg       120
     tcggcgtcgt cgtgagtgta ttggtgcagc gcagcatgga ttccatcagc aagtttgcca       180
     aactaaacaa ccagaattgg caaacctgga agtttagaat ggaaatgctg cttaccagag       240
     aggaactctg gtacgtcatc gacaccgtga agctggagcc ggaaacgccg cagtggacca       300
     aggacgataa gaaggcgaag gctacgatgg ggttgtgcat cgaagacaac cagtacagtc       360
     ttgtgaagac ggcagcatca gcgcgtgatt tctgggagca gctgcagaac tatcacgaga       420
     aggtaaccat ggtccgatta tcttccgaga ttttcgctgc tgaaacggcc ctgcagtttg       480
     caggagcctt cctgattcct actccggatt agtgacagcg ctcgaaggtc gccctgacgg       540
     cgctttgacg gtacagttgg tgaaatccaa actactcgat gaatacaagc ggcgcaagga       600
     gtgcggaagt ggatcatccg atgtgaaagc gatgaagagc caagcgagga ccaatgctgg       660
     tgctggtgtt gcagagaaaa cttgtttctt ctgtaagaag aaggggcacc tgcgtcgaaa       720
     ttgtcgtcta ctccaggaga agcagaataa aagcggtgaa gagaagcaga agggcaaccc       780
     gaaagcgaag caggctacta tggagcattc gaatgcagtt ctttttcttg ccggtgagga       840
     gcagcaggaa agccgctggg tgatcgatag cggtgctagt cgacacatga caaacagcaa       900
     atcactttac acgctgttcg tgaaggatga cactcctaac gtggttctgg cgaatggggc       960
     cacagtgaag tctgttggat ccggtgactg taagctgaac ggtgtgagtg gttgtggcgg      1020
     cattacggaa atcaccctga aagacgttct cttcgtgcca acgctgaata gcagtttgtt      1080
     gtcggtggca cagttgactg agaggggatt taccgttgga ttcaagcggg acggctgcga      1140
     aatcgttaac gtcgctggag aagttgttgc caagggtgat cgcagtggaa gtttgtacgt      1200
     tttgaggatt tccgagtctg cgatggaggt gcaatgcaag cggcatagtg agtggtgcca      1260
     acaccaatgg cacagaaggt tcgggcaccg ggaaccgtcg gttgtagaga agatgtataa      1320
     agagaagctt tgcaacggaa tggtgctgaa agactgcggc atacgtatga cgtatgagcc      1380
     gtgtattgaa ggtaagctct ccaggacacc gataccgaag gcagctacga agaagaccaa      1440
     ggaagtgttg gacctcgtgc acacggactt gtgcggtccg atgcgaaccc ccacgccgag      1500
     tggaaaccgt tttctaatga ctgtcatcga cgatcacagt aggtatactg ttgtgtacct      1560
     attggaaaag aagtccgacg ccccggatcg actgatggag tatgtcaggt acgttgaaac      1620
     cctttccgga agaaagccga aagtagtcag gtcggacggc ggcggggaat actgcaacga      1680
     acgtttgaag agtttctttg agcgagaggg tataaaggcg caatacacga ctgcctatac      1740
     tcctcaacaa aatggcgtcg ccgagaggag gaaccgttac ctgcaggaga tggcaactgc      1800
     catgcttctt gacgccaagc tggacaagaa gtattggggt gaggctgtga tgacggctgc      1860
     tcacttgcaa aatcgattgc cgtcgcgatc ggtggacagc atgccttttg agaagtggtt      1920
     tgggtggaaa cccgacctga gctacctgaa ggtgtttggc tgtaaggctt gggttcacgt      1980
     tccggacacc aagcgtggaa aatttgacag caaggcgcgt aagctcacgt ttatcggtta      2040
     ctccgaacag cacaaggcct accgttttgt ggatctggag accgagaagg ttacaattag      2100
     tcgcgatgcc aagttcgtcg agcttgagga ggaggaagct gtgtcgcagc cgaagactgt      2160
     ttcggagcct acagacgacg aggtgaactg gatgccgttg cgaaattcgg cgccggccga      2220
     tgagcagcag gatatgaatg aagccgagga tgattcaagc gaagtggata gcgaatgtga      2280
     agagttcttt gacatgggtt cgcctcaagc attccaagag gatccgttgg cgattaaaat      2340
     tgagccatct gaagaaccag ttgagcaaga ggatgttcca gcgagcgttt caaagttggc      2400
     gactcggaag actcgtggca agttgccgaa gcatttagga gattatgagg tgggtattgc      2460
     tacccacgcg atgaaggaac cggtgaactt taacgaagca acgaagtctg agcaagcaaa      2520
     atcctggcga agtgcgatgg acgacgagta ccagtcgcac atggtgaacg gcacttggga      2580
     cctagtcgac ttgccgcccg gcaagaaagt agtaggtagt cgctgggttt acaaggcgaa      2640
     gctgaatgaa gcgggcgaag tagcgcgatt caaggcacgc atcgtagcac agtgtgcagt      2700
     gtgtgcaaga cccgacatag ctgcaagtgc gtcgatttta gggagaaaat ttgctgcgcc      2760
     tactgagaac gactggacgg ctgctaagag agtgattcgt taccttaaag gcaccgtcga      2820
     ctggagatta aagctaggag gcgtcgagac caacgagcta gttgcgtact cggacgctaa      2880
     ttgggcagga gacccacaga cgcgtaagtc aatgaccgga tttgcaacgt tctttgctgg      2940
     aggtgtcgta tcttgggtca gtcgtcgtca ggactgcgtg agcctttcgt tcatggaggc      3000
     ggagttcatt gcgttgggag aaacttgcca ggaagttctg tggatgagac gcttgttgga      3060
     agatttgggg gagagccagt tgaccgcgac tgtcgtccat gaggacaacc aaggttgtct      3120
     agcgtttgca caatcggaga agatcaacaa gaggtcgaaa catgtggaga ctaagcgttk      3180
     tttcgtcaag gatttgtgtg agcgaggaac cgtaaagctg aaatattgtc aaaccgacga      3240
     aatgcagagc cgacgtgctg acgaagccac ttggggctgt gaaacaccat cggttctcgg      3300
     agctacttgg acttggacct ccgagggctg accgttgagg aggag                      3345
//
ID   Copia-100_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-100_AA_;
KW   Copia-100_AA-I; Copia-100_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 243 BP; 58 A; 64 C; 46 G; 75 T; 0 other;
     tgttaggagt acaacgtgtc atccctctac accgggcagg gcatctgcca taccagagca        60
     taaaccacat tgtgtggtat acctttcagt atgatatact ttgattgttg ttatctaata       120
     aaaacgccat tcgagagtac cgcgtgcgtt catattttgg tccgattatt ttccgagatt       180
     ttcccgtcga tttccttcct accggtcgcg taatccactg aatcctgttc cgccaaaccc       240
     aca                                                                     243
//
ID   Copia-101_AA-I repbase;    DNA;    INV; 4342 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-101_AA_;
KW   Copia-101_AA-LTR; Ty1_copia_Ele55; Copia-101_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4342
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1661-2188] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           317..4105
FT                 /product="Copia-101_AA-I_1p"
FT                 /translation="MSEKFLFARLNNQNFPVWKTRMEMYLKREELWKVIRD
FT                 AAPEPVSDDWTKSDEKALAMIVLGVEDSQLNLVRGVATAVEAWNKLKDFHE
FT                 KTSMTSRVSLLRRICSLNMCEGDNIEKHLYELEELFDKLACAGQEMEMPLK
FT                 IAMIYRSLPESYGSLVTALEGRPDADQTMELVKQKLIDEHQRRQERSGDAG
FT                 ENAMKMYSRKKKSDKVCFQCGKPGHFRRNCPQPKSGPSGSDVKRDSKPKSG
FT                 SAKAKQAEESDSAICFVAGNKCSGPWIVDSGCSSHMTNDKSFFDKLDTSVK
FT                 VKVILADGSETMSGGIGEGTVKCVSGENSLVDIPFKDVLYVPALDSGLISV
FT                 RKLVKRGLKVEFSGSRCEILSAQGKIVAVAEPRGNLFALKVAEEARLGKEA
FT                 RHLQNCQHTWHRRFGHRDPAALDEIQRKELSDDFKIQDCGIRQVCQPCLEG
FT                 KSCRIPFPKTASNRTQRVLDVVHTDVCGPMANVTPGGARYLMTIIDDHSRY
FT                 TVVRLLKRKSGVADCIKKYVAHVKNMFGRAPCVIRSDGGGEYTGHDLKRYY
FT                 EQEGIQAQFTAAYSPQQNGVAERKNRSLQEMATCMLLDAGLDKKYWGEAVA
FT                 TAAYLQNRLPSRAVDTTPYERWFGRKPSLSHMKIFGCPAFVHIPDVKRSKL
FT                 DSKAKKLLFVGYCSDRKAYRFLNTDTNEITISRDARFVELQEEKTPALGGL
FT                 QSAGEEFVEVETTSSRPKKRVDEENSEQPRDQEESEEDTFFDWDDEQEQSD
FT                 QPEATRKEQKRSTRGVLPKRLEDYVVNAAMLAQEEPATYEEAVAGPEQGLW
FT                 QEAMAKEYQSLMENRTWKLVELPAGRTPISCKWVYKKKHDSVGNVSRFKAR
FT                 LVARGFSQKFGVDYDAVFAPVATQTTLRILLTVAGQKKMHVHHLDVKCAYL
FT                 HGKLKEEVYMQQPKGFVIPGKEKFVCKLERSLYGLKQAARVWNETISVLLK
FT                 ELGFTQSVADPCLYVKRLPDGGVVYLLIYVDDMIVASTVEEEIRLIEEQLR
FT                 KKISLTSLGEVKQFLGVRVTRDDEGCFSLDQSVFIKVLAQRFGLQDAKGSS
FT                 IPLDPGYYRSRVNSQPLDSNERYHSLVGALLYIAVNTRPDVAASVSILSRQ
FT                 ISSPTETDWVELKRVVRYLLKTACYKLKLSAAKLDLVGFCDADWSGDPSDR
FT                 KSNSGYLFQLGKATICWASRKQTSVSLSSMEAEYMALSEACRELVWLRLRN
FT                 WRPQQKPTTVLESSLWRLTVNQEDPNISTLGCTTPRIWSIKVWWLSNIVRR
FT                 RK"
XX
SQ   Sequence 4342 BP; 1168 A; 901 C; 1309 G; 963 T; 1 other;
     ggttcatggg cccagagtca gtgaattggg aaaagtgttt tccgggacag aaagtgcttc        60
     gcggaagcca ttagtgtgcg aaaaagtttt cggcgtgggt acgattggta cagttctgtc       120
     ggcggttgca tttggctcga gctgcagagc agcgcgcggt tgtgatagtg tgcgtgtgat       180
     ttggagcact cgagcagtgc gcgttttcgg ttgctggtgt gttcgaggct ggaagaaatt       240
     tctagcgtaa caggtgaaag aggcctgatt ggaaaagttt tcgttctcgt cgcgtgtgtg       300
     tcgatcggag aagaaaatga gtgagaaatt tctgttcgct cgtctgaaca accagaattt       360
     ccccgtgtgg aaaacgcgta tggaaatgta tttgaagcgc gaagaactgt ggaaagtgat       420
     aagagacgca gcaccagagc cggtcagtga tgactggacg aagagtgacg aaaaggcgct       480
     ggcgatgatt gtcctaggtg ttgaggacag ccagttgaat ttagtgcgtg gtgttgcgac       540
     ggcagtggaa gcgtggaata aattaaaaga ttttcacgaa aagacgtcga tgacgtcaag       600
     agtgtcattg cttcgtcgca tatgcagctt gaatatgtgc gaaggggaca atatcgagaa       660
     gcacttgtat gagttggaag agcttttcga taagttggct tgcgccggtc aggaaatgga       720
     gatgccgctt aaaatcgcga tgatctatcg cagcttgcca gagtcttacg gcagtttggt       780
     taccgctctg gaaggtagac cggatgccga tcagacaatg gagctggtca agcaaaagct       840
     gattgacgag catcagcgcc ggcaagaacg ttcgggcgat gccggtgaaa acgcgatgaa       900
     gatgtatagc aggaagaaga agagcgataa agtgtgtttt cagtgcggca aaccgggaca       960
     tttccgccga aattgtccgc agccgaaaag cggcccgagc ggcagtgatg tgaagcgcga      1020
     ttcaaaaccg aaatccggta gtgcgaaagc gaagcaagcg gaagaaagtg attcggcgat      1080
     ctgttttgtg gctggaaata aatgcagtgg accttggatt gtcgacagtg gatgttccag      1140
     ccacatgacg aacgataagt cgttctttga caaactggac acgagtgtaa aggtgaaagt      1200
     gatcctggcc gatgggtcag agacaatgtc cggwggaatc ggagaaggca cagtgaaatg      1260
     tgtgagcggt gaaaacagtt tggtggacat tccgttcaaa gacgtgttat acgtgcctgc      1320
     actggacagt ggactcattt cggtgagaaa actcgtgaag agaggactga aagtggaatt      1380
     cagtggttcg agatgtgaga tcttgtccgc gcaaggtaaa atagtggctg tggcggaacc      1440
     ccgcggcaat ctattcgcgt tgaaggttgc agaagaagct cggctgggca aggaggctcg      1500
     gcacctgcag aattgccagc atacctggca ccgccggttt ggtcaccggg atccggcggc      1560
     attggatgag atccagagga aggagctttc tgacgacttc aagattcagg attgcgggat      1620
     ccggcaggtt tgtcaacctt gccttgaagg taaatcatgt agaattccat ttcctaaaac      1680
     cgcgagcaat cggacccaac gtgttctcga cgtcgttcat actgatgtat gtggtccgat      1740
     ggcaaacgta acgccaggag gtgcccgcta tctaatgaca atcattgatg atcatagtag      1800
     atacaccgtc gtgcgtctac tgaagcgtaa gagcggtgta gctgattgca ttaagaaata      1860
     tgtcgcgcac gtcaagaaca tgtttggtcg ggctccatgt gtaataagat cagacggcgg      1920
     gggtgaatat accggtcatg acttgaagcg gtattatgag caggaaggca ttcaggcgca      1980
     gttcaccgcg gcctactccc ctcagcagaa cggagtggcc gagcggaaga atcgctcact      2040
     ccaagaaatg gccacatgta tgcttcttga cgccggcctt gataaaaagt actgggggga      2100
     ggcggtggct actgcagcgt atttacagaa taggctacca tcccgcgccg tcgatactac      2160
     accttacgaa aggtggttcg gcaggaaacc gtctctttca catatgaaga tattcggttg      2220
     ccctgcattt gttcacatcc ccgatgttaa acggtcgaag ctagatagta aagctaagaa      2280
     gctgctgttc gtgggttatt gtagtgacag gaaggcctac cggttcttga atacggatac      2340
     aaacgagatc actatcagtc gcgatgctcg gtttgtggaa cttcaggagg agaagacacc      2400
     tgcgctaggt ggtctgcaat cggctggaga ggaattcgtt gaggtagaga ccactagcag      2460
     ccgtccgaag aagcgagtag atgaagaaaa ctcagaacag ccacgggacc aggaggagtc      2520
     cgaggaagat actttcttcg actgggatga tgaacaggag caatctgacc aaccggaagc      2580
     gacaagaaaa gagcagaagc ggagcacccg aggcgtactg ccaaagcggt tggaagacta      2640
     cgtcgtcaac gcggcgatgt tggcacagga ggagccagcg acctacgagg aggcagtggc      2700
     cggacccgag caaggactgt ggcaggaagc tatggcgaag gagtatcagt cgctgatgga      2760
     gaaccggaca tggaagcttg ttgaactacc cgccggacgg accccaatca gttgcaaatg      2820
     ggtctataag aagaagcatg atagtgtcgg caacgtttcc cggttcaaag cacggctcgt      2880
     cgcgagagga ttctcacaga aatttggagt agattatgat gccgtctttg ctccagtggc      2940
     gactcaaaca accttgagga ttttgctaac ggtcgccggg cagaagaaaa tgcacgtcca      3000
     tcacctcgac gtgaagtgcg cctaccttca cggtaagcta aaggaggagg tgtatatgca      3060
     acaaccgaaa gggttcgtta ttcctgggaa agagaagttc gtgtgtaagc ttgaacgcag      3120
     cctgtacggc ctcaagcagg ccgcacgagt atggaacgag acgataagtg tgctgttgaa      3180
     ggagctcggt ttcacacagt cggtggcaga tccatgcctt tacgtgaaga gattgcccga      3240
     tggtggtgtc gtatatctcc ttatttatgt cgacgacatg attgtggcaa gcacggttga      3300
     ggaggagatc aggttgatcg aagaacagtt gcgaaagaag atatcgttga cgtcgctggg      3360
     agaggtgaaa caattcctcg gcgttagagt gactagagac gatgaaggat gtttcagcct      3420
     ggatcaaagt gtgtttatca aggttcttgc gcaacggttc ggtttacaag acgcaaaagg      3480
     ttcaagcatt ccactcgatc cgggatatta ccgcagccgg gtgaatagtc aaccactgga      3540
     ttcgaacgag cgctaccata gtttggtagg agcgcttcta tatatcgcag tgaatactag      3600
     gccggatgtt gccgcaagcg tgtccatcct aagcaggcag atcagcagcc ctacggagac      3660
     cgattgggtt gaattaaaac gtgtcgtacg atacttgttg aagaccgcct gctacaagtt      3720
     gaaactgtct gctgcgaaat tagatctcgt tggattctgc gacgcggatt ggagcggaga      3780
     tccatctgac cgcaaatcga attctggcta tttgttccag cttggcaaag caacaatttg      3840
     ttgggcaagc cggaaacaaa cgagcgtatc tttgtccagc atggaggccg aatatatggc      3900
     cttatcggaa gcgtgccgtg aattagtttg gctgaggctg agaaattgga gaccgcaaca      3960
     gaagccaact actgtactgg aatcgagttt gtggagactg accgtaaatc aagaagatcc      4020
     aaacatatcg acactagggt gcactacacc aaggatctgg tcgataaagg tgtggtggct      4080
     ctccaatatt gttcgacgga ggaaatgact gcggacatcc taacaaaacc gttgggagcg      4140
     gtgaaacaac agcgattcgt ggaagcgatg gggctggtca gtaccgatgg ccagactgta      4200
     ccggttccgt gacgacgagg aggagtgtca gctataaagt gggggcagcg tttatggtaa      4260
     cgccgtcact gcaccgccac gctggcaaca caagagagag agaagcgaaa gtgaacgatc      4320
     attcttttca tacccattag tc                                               4342
//
ID   Copia-101_AA-LTR repbase;    DNA;    INV; 162 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-101_AA_;
KW   Ty1_copia_Ele55; Copia-101_AA-I; Copia-101_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-162
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 162 BP; 33 A; 40 C; 38 G; 49 T; 2 other;
     tgtacccgat atacgaaaga ataaagacgt ttagagtaaa cggtcccgcg agttaaaakt        60
     ttttttccct ctatcacgat acgcattgtc cggaktgttc cggtgttccg ctggcctgtt       120
     gggtgtccgt attcgtcggt cggtccactc tgttgcccta ca                          162
//
ID   Copia-102_AA-I repbase;    DNA;    INV; 4123 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-102_AA_;
KW   Copia-102_AA-LTR; Ty1_copia_Ele94; Copia-102_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4123
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1472-1999] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..4123
FT                 /product="Copia-102_AA-I_1p"
FT                 /translation="MERTGIAKLNNENYDSWKLEVEFLLVREGLWKYVSPG
FT                 VKPEPAADGANAAEIAAWEEADQRARATIGLLLSRSQHGHIRNTTTAKAVW
FT                 DNLKQQHEKKTLTSKVQLLKRICDLQYHEGDDIVEHLQEYEDLFEKLANAG
FT                 TKLDNDLQVILVFRSLPSSFDALTTTLENRSEDDLTLELVKGKIVNEVLKR
FT                 KEKTPAEGIAMKAEDKKKNIVCHHCQKAGHKKRFCKLLTKKNKEESARSQS
FT                 ESDRKAEKAKLAKSEEEVFAFGVSDSAVSNSVDGWIIDSGASSHMCTNKGY
FT                 FQSLDTLRDDTPKSVTVADGKSADVKGIGICKLRCYGQDSKVKQIVLSEVL
FT                 YVPDLDMNLVSVSKLVQKGATVTFSETGCTISRGSRIAAVAPRYMGLYHLR
FT                 LAEQAGAAMEQSCGKHCVHEWHRKLGHRDVQAIREMENKQLATGIKVGSCS
FT                 SNITCETCLQGKMTRLPFPKKAKIKSKAVLDLVHSDLCGPMNTVTPGGHRY
FT                 FLTLIDDFSRYTTLYFLHKKSETVEAIKDFVRCMKTRFGKPPKMIRSDQGG
FT                 EYRATELVRFLKDEGILQQFTTAYTPQQNGVAERKNRSLVEMARCMIIDAG
FT                 MHYRYWAEAVSTANFLQNMLPTKPIQLTPYEMWCGEKPDFGMMQIFGSEAY
FT                 VFVPKEKRTKLESKAVKMTFVGYSSQHKAWRFIDTKTNKIVFSRDARFLPT
FT                 KENPDSSTPDAPEDHVVEELPPVSVPATTESHMDRLPDGFASDEEDFYGYE
FT                 EEDFHGYEDEPTMYEDACNSGENVSEHGDESDAVQEEFGEIEEEQSSGDLR
FT                 RSNRTNKGVPPDRFSASSRFARPQSSEPRSYKQATTGTESAQWITAMKDEL
FT                 ISHRENKTWDVVKLPPGKKIIGCRWIYKRKLDEHGRLSSYKARLVAQGHKQ
FT                 RFGLDYDEIFAPVAKQVTFRMLLTIASRRNMLVKHVDVKTAYLNGDLKETV
FT                 YMKIPPGVAAEPNEVCLLRKSLYGLKQSARMWNRKLDETLRQMGFKPAEAD
FT                 PCLYVRWRNKKLTFILVYVDDMLICTSTQEEYEEILEALNSKFQMTALGDV
FT                 KQFLGIQVTKTENGYCLNQQAYINRMVASFGLDDAKGSRIPMDPGYIQLKE
FT                 EVERLPNNDKYQSLVGGLLYVSVHTRPDIGISASILGRRVSNPTVADWTEA
FT                 KRTLRYLKATSGLQLQLGGDAGDLEGFADADWAGNVLDRKSNSGYLFRFGG
FT                 GLISWCARKQPCVALSSTEAEYISLSECCQELMWLKKLMKDFGESVKKPIC
FT                 IFEDNQSCIKQLSQAKTIGKRSKHIDTKYHFVKDLFEQEQIDVTYCPSEDM
FT                 LADILTKPLSRVKLEILRDRIGLRSARDEEE"
XX
SQ   Sequence 4123 BP; 1229 A; 824 C; 1099 G; 971 T; 0 other;
     ataggttatg ggccggtgtt agccattttg ttttcgtgcg cattgaaaat cgcaattttt        60
     cggttcgttt caagtgtgat cgcgaaaatt gaaaatggag agaacgggta ttgcgaaatt       120
     gaacaatgaa aattacgact cgtggaagct ggaagtggaa tttctgctcg taagagaagg       180
     attgtggaag tacgtttcgc cgggagtgaa gcctgaacct gctgctgacg gcgcaaacgc       240
     ggctgagatc gctgcttggg aagaagcaga tcagagagcg cgtgcgacaa tcggattgct       300
     gctttctcgg agtcaacacg gccatattcg gaacactacg accgcgaagg ctgtgtggga       360
     taatttgaag caacaacacg agaagaaaac gttgacttcc aaggtgcaac ttctgaagcg       420
     gatttgtgac cttcagtatc acgagggcga tgacattgtg gagcatctgc aggaatatga       480
     agatcttttc gagaagcttg cgaatgccgg aaccaaattg gacaacgatt tgcaagtgat       540
     tctagtcttt cgtagcctgc ctagctcatt tgatgcgtta acaactacgt tggagaaccg       600
     ttcggaggac gatttgacgt tggaactcgt aaaaggcaaa atcgtcaacg aggtcctcaa       660
     gcgaaaggag aaaacgccag cagaaggcat cgccatgaaa gcggaagaca agaagaagaa       720
     tattgtgtgc catcactgtc aaaaggcggg acacaaaaag cgtttctgca agcttttgac       780
     gaagaaaaat aaagaagaaa gtgcgcgaag ccagagtgag tctgatcgta aagcagaaaa       840
     agctaaactg gcaaaatcgg aagaagaagt gttcgcgttc ggtgtaagtg acagtgcggt       900
     ctcgaattcg gtcgacggct ggataatcga ctcgggcgca agttcacata tgtgcaccaa       960
     taagggatat ttccaatcgt tggacacatt gcgcgatgac actccgaaat cagttacggt      1020
     cgcggacggg aaaagtgctg atgtgaaagg tatcggtatt tgcaaattgc gttgctatgg      1080
     acaagactca aaagtgaaac aaatcgtgtt aagtgaggtc ttgtatgttc cggatctcga      1140
     tatgaaccta gtatcagtga gtaagctggt gcaaaaagga gccacggtta ctttcagtga      1200
     aacaggatgt acaatatcaa gaggaagtcg gattgctgca gttgccccca ggtatatggg      1260
     cctttaccac ttgagattgg cggaacaagc gggtgcagcg atggagcaaa gttgcggaaa      1320
     acactgtgta catgagtggc accgtaaact aggacacagg gatgtccaag ccatccgaga      1380
     aatggagaat aagcagctag cgactggtat caaggtaggt agctgttcct ctaatatcac      1440
     ttgtgaaacg tgtctgcaag ggaaaatgac tcgtcttcca tttcccaaga aggctaaaat      1500
     caaatcgaaa gccgttcttg acctggtgca cagtgacttg tgtggaccca tgaacacagt      1560
     cacaccaggt ggtcaccgct attttttaac gcttatcgac gattttagcc gatacaccac      1620
     gttatatttc ctgcacaaga agtcagaaac tgtcgaggca atcaaagact tcgtgcggtg      1680
     tatgaagaca cgatttggta aaccaccaaa aatgattaga tctgatcaag gcggtgagta      1740
     ccgtgcaacg gagctggttc gtttcttgaa ggatgaagga attttgcagc aatttactac      1800
     agcctatacg ccgcaacaaa acggcgttgc tgagcgaaaa aatcgttcat tagttgagat      1860
     ggctcgctgc atgattattg atgctggtat gcattaccgg tattgggctg aagctgttag      1920
     cacagccaat ttccttcaaa acatgctacc taccaaaccg atccagttga caccgtacga      1980
     aatgtggtgc ggtgaaaagc cggactttgg aatgatgcaa attttcggct ccgaagccta      2040
     tgtatttgtg ccgaaagaaa agcgtactaa actcgaatcg aaggcggtga aaatgacttt      2100
     tgtagggtat tcatcgcaac ataaggcgtg gcgctttata gatacgaaaa cgaacaaaat      2160
     tgtattcagt cgcgatgcaa ggtttctacc cacaaaagaa aaccctgact cgagtactcc      2220
     agacgcgcca gaagatcacg ttgtggaaga actaccgccg gtgtctgtac ctgcaactac      2280
     agagagccat atggatagac taccagatgg atttgcatcg gatgaagaag atttctatgg      2340
     atatgaagaa gaagatttcc atggttatga agatgaaccc actatgtatg aagatgcctg      2400
     taatagcgga gaaaacgttt cggagcacgg cgatgaaagt gatgcggttc aggaggagtt      2460
     tggtgaaatt gaggaggagc aatccagtgg cgatctacgc cgctcgaatc ggacaaacaa      2520
     gggcgttccg ccggatcgtt tttctgctag cagtagattt gcccgtccac agtcatcgga      2580
     acccaggagc tacaagcaag ccacaaccgg aaccgaaagt gcacagtgga ttaccgctat      2640
     gaaggatgaa ctcatttcgc atcgtgagaa caagacgtgg gatgtggtca agttgccgcc      2700
     tggaaagaaa ataattggat gccgttggat atacaagcga aagctggatg aacacggaag      2760
     gcttagcagt tataaagcgc gcctagtggc ccaggggcac aaacaacgat tcggtcttga      2820
     ctacgatgag atctttgcac ctgttgcaaa gcaagtcacg tttagaatgc tgctaacaat      2880
     cgcaagtcgt cgtaacatgc tggtaaaaca cgtggatgtt aagacagcat atctgaacgg      2940
     tgacttgaag gagactgtgt atatgaagat tccaccaggc gttgctgcag aacccaacga      3000
     agtttgcttg ttacggaaga gtttatatgg actgaagcag tcggcccgta tgtggaatcg      3060
     caaattagat gagactctac gccagatggg atttaagcct gcagaagctg atccgtgtct      3120
     gtacgtgcgt tggcgtaata agaagttgac gtttattctg gtgtacgtcg atgatatgtt      3180
     gatctgcaca agcacccagg aggagtatga ggaaattctt gaagcgttga acagcaagtt      3240
     ccaaatgacc gcccttggag atgttaaaca gtttttggga atacaggtca ctaaaactga      3300
     aaacggttac tgtttaaacc agcaagcata cattaaccga atggtggcta gttttggttt      3360
     ggacgatgct aaaggatctc gcattccaat ggacccggga tacattcagc tgaaggagga      3420
     ggtagaaagg ctacccaata atgataaata ccagagcctt gtgggtggtc tgctttatgt      3480
     atccgtacac acccgtcctg acattggaat tagtgcttcg atactaggac gccgagtcag      3540
     taacccaaca gtagccgact ggacggaggc aaaaagaaca ttgcgctatc tgaaagctac      3600
     gagtggactg cagcttcaac tgggcggtga tgccggagat cttgaaggct ttgctgatgc      3660
     cgactgggcc gggaacgtct tagatcggaa gtcaaactca ggatatctgt ttcgctttgg      3720
     tggtggactc atctcttggt gcgcaaggaa acaaccatgc gtggcattgt cttcaaccga      3780
     ggcggaatac atttcactat cggaatgctg ccaggaactg atgtggctga aaaagttaat      3840
     gaaagatttt ggtgaatcag tgaaaaagcc catatgcatc tttgaagaca atcagagttg      3900
     cattaagcag ctcagtcaag caaaaaccat tggcaagcgt tcaaaacata ttgacacaaa      3960
     ataccatttt gtcaaggacc tttttgaaca agaacaaatc gacgtgacct attgcccatc      4020
     cgaagatatg cttgcggata ttctgactaa gccgttgagt cgtgttaagc tggagatact      4080
     gcgagacagg attggcctca ggtcagcacg tgatgaggag gag                        4123
//
ID   Copia-102_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-102_AA_;
KW   Copia-102_AA-I; Copia-102_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-146
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 146 BP; 31 A; 35 C; 25 G; 55 T; 0 other;
     tgatagcatg gcaaccctgc cgtgtggaga ctttacatca cgaacttttt ccatttcctt        60
     tccatttgag ctttgaataa aagtacagtt gaattcgttc tctctacctg attggttgtg       120
     ttttattagc tctgctctac ctccca                                            146
//
ID   Copia-103_AA-I repbase;    DNA;    INV; 5686 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-103_AA_;
KW   Copia-103_AA-LTR; Ty1_copia_Ele83; Copia-103_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5686
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2959-3462] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           406..5448
FT                 /product="Copia-103_AA-I_1p"
FT                 /translation="MENRVVKRFVAPAFKGDMKSYPFWKKRMEIFLRQEDL
FT                 FYTLENSPEEENYFNPVANATPEQETERKQKLEKRLKDDGAAVNEFFTALD
FT                 DEALIHVMECTNAKEITKRLDEVYLPKGPVAMLGLRSRLYLLKNENFSSLQ
FT                 QLFTSHEEIIIQLNNMGEHISQEEQLNTLLVAIPDKFNYLLGALSVLRKED
FT                 LTQMSLQQVKRIFLDEDQKNADSRGNKMKPEAAFVGNNPRQKGKPGNRNKK
FT                 NYEKHITCFGCGKIGHRKQNCIEEKHRDQASLVEEVVEDVALLAASAIAPV
FT                 TNDKQALPTASPTPKNVALLTTPEAPVVNESAHMQETPSPIRSSTSGFKLS
FT                 DMVPLVVTFDCPRILSPIPSTPKVSPRVVKIASPIVSPRVQNEQLSSLKVT
FT                 VNSSTSSSAGARRIVAVASPDASPEVQDEPVLPASINSSTSSLAGVQQAKG
FT                 SAVTDNDSAELEAPKSTVPHTQTVHRQNGSFMVRIPLDRIELCAIGKIRHD
FT                 RGDPFCPKLKEAVTPPAPGPGAGRGRGRAPRRPPRGAPRPAPRRPGAPPPA
FT                 PRAPARPRPRAAPPARRPPPGAPARGPAGRPPPRRGRAAPRGAPGRRGAAA
FT                 RRRPGAGGRPGPGARARAARAPAARRAPRARPAPPARGGNQYIRNMTMNDM
FT                 PVKVPGVLPMYLDSGASRHMVREKRCFDELWDTKPVIVQTAEERTQLRGSR
FT                 EGNIRVKSKVGNKVFISTMYNVLFVPNLSCNLLSVSQLESNGKSVLFQNGK
FT                 VKILDKEGNIIAEGVKENGLYCLKFFLINSEENAHVSKEEQYELWHQRFGH
FT                 LGKDNMFKLIKNDMVQGLDIKNSSISTELCQPCLAGKQTRNPFNKNKESRS
FT                 RRPLELVHSDVWGPSPEPNHDGSRYFVSFIDDFTHFTRTYLISHKSDVFQK
FT                 FQEFEALATAHFSLKITKLRTDNGGEYYSNEFIKFCKSKGIELTPTVPYTP
FT                 QQNGVSERMNRTLMDKARSMMHDKDVPESLWGEALFVSTYLTNRSPTIALE
FT                 ACKTPYELWFGDKPDVSKLKVFGCVAYSLVNQVHRSKLDKRNRILGMVGYA
FT                 HNGYRLWDKEERKIVISRDVVFDENKSYFQIQSESSRSKETSPVLVEFSDE
FT                 PVELTQPDEDVERDVESDRSSDSDEDFQEALDPLDEEFEILNRRSGRLRRP
FT                 PNWLSDYETGLIAGNGSANIPQNIRELMNRDDWNEWKKAIAEEMKALHDNE
FT                 TWTLIQSVPDGRKAINSMWIFTIKNDTDSPRYKARLVAKGCAQSAGIDYTE
FT                 TFAPVAKMTTIRTLLSIAVQYDLQIHQMDVKTAFLNGNLKEEIYMKLPPGE
FT                 DGIVRTCQLKKCLYGLKQASRSWNERFDQIIISMGFTRLRSDSCVYILKDK
FT                 NIYLVLYVDDMLIFGKDAKCIKWIKESLSKHFQMKDIGGVKNFLGLEIFRE
FT                 TGVLEVSQQSYVERILQNFGMENCKPVSTPISTSGKWKRDEGILTTKPYKA
FT                 LLGCLQYLALMSRPDLCFSVNFFSQFQSSPSDSHWSGLQRILRYLQGTKTY
FT                 RLVYHRSTNEAPLTGYADADFANGLDDRRSTSGIMYTVFGNTVSWKTKKQT
FT                 LVVLSSTEAEFVALCEASKEGMWLSNLLHEIGIDVLPFRIHEDNIPCISIA
FT                 EEPRHHQRTKHIDIKYAFVRELIKEKKIELNYIPTDFQLADIFTKALGEAK
FT                 FSKFVSALNLKK"
XX
SQ   Sequence 5686 BP; 1756 A; 1245 C; 1337 G; 1348 T; 0 other;
     ggttatgggc ccagaaatcc gctcttaatc aaatcgatta aacagcgaca aatatatatt        60
     atcattgctc aggcgaagaa tttcgtggag ctttcggata attatatata cggaaaaacg       120
     tgtgttcaga ccaagctttt cgtggaacaa catttgaaaa attgcaacaa aagttcagac       180
     gaagattttc gtagaacttt cagttgtgtg aaacgtgtgt tcagacgaag cttttcgtgg       240
     aacatttgaa aagtttacaa caaaagttca gacgaaagat tttcatagaa ctctcagttg       300
     tgacatttgc gaacacttga agaaagttcg ggcgaagttt ttcgtagaac tgtcaacaaa       360
     cattgactac atttgtaagg ttctggttca ttgacattta ttaacatgga aaatagggtt       420
     gtcaaacgat ttgtagcacc tgccttcaaa ggtgacatga aatcgtatcc gttctggaag       480
     aaacggatgg aaatattttt gagacaggag gatttgttct atacactcga aaatagccca       540
     gaagaagaaa attacttcaa tcctgtcgca aatgctacac ccgaacaaga aacagaaaga       600
     aaacaaaagc tggaaaaacg attgaaagat gatggtgcag ctgtcaacga gtttttcaca       660
     gctctagatg atgaagcttt gatacatgtc atggaatgta caaatgcaaa ggaaattacg       720
     aagaggctag atgaggtcta tcttccaaaa ggtccagtcg ccatgttagg gttgaggtcc       780
     cggctttact tgctcaagaa tgagaatttc agttctcttc agcaattatt cacttcacat       840
     gaagagatta tcatccagct caacaacatg ggggaacata tttcgcaaga agaacagctg       900
     aataccttgc ttgtagcaat tccagataaa ttcaattatc tgctaggagc actttcagtt       960
     ctaaggaaag aggacctaac gcaaatgtct cttcaacagg tgaaacgcat ctttctggac      1020
     gaagaccaga agaatgcgga cagtcgtggt aacaaaatga aaccagaagc ggcgttcgtt      1080
     ggtaacaatc ccaggcaaaa gggcaaacct ggaaatagga ataaaaagaa ctacgagaaa      1140
     catatcactt gctttggttg cggaaaaatc gggcaccgaa aacaaaactg cattgaagag      1200
     aaacatcgtg atcaagcatc tctagtggag gaagtcgtcg aagatgttgc gcttctggcg      1260
     gcatctgcaa ttgctccagt cacaaatgat aaacaagcat tgccaacggc ttccccgaca      1320
     ccgaaaaatg tggcactttt gacgacacca gaagcaccag tggtcaatga atctgcacac      1380
     atgcaagaaa ctccatcacc tattcgatct tcgacatctg gattcaaatt gtcggatatg      1440
     gtgcctttgg tagtgacgtt tgattgcccc agaattttgt ccccaatacc atcgacacct      1500
     aaggtctcgc cgagagtggt caagattgcc tctcctattg tcagtccaag agtccagaat      1560
     gaacaattgt cgtcactgaa agtcacagtt aactcatcaa cttcatcgtc tgccggagcc      1620
     agaaggattg tagcggttgc ctctcctgat gccagtccag aagttcagga tgaaccagta      1680
     ttgccagcct caattaattc gtcaacttca tcattggctg gagttcaaca ggccaaagga      1740
     tctgcagtaa ctgacaatga ctcagctgaa cttgaagcac caaaatcaac agtaccgcac      1800
     acccaaactg ttcaccgtca gaatgggtca ttcatggtcc ggatcccgct ggatcgtatt      1860
     gagttgtgcg caatcgggaa aatacggcat gatcgaggag acccgttttg tccaaagtta      1920
     aaggaagcag tgaccccccc ggcgcccggc cccggcgcgg ggcgcggccg cggccgcgcc      1980
     ccccggcgcc cgccgcgggg cgccccgcgc cccgcgccgc ggcggcccgg ggcgcccccg      2040
     ccggcgccgc gcgcgcccgc ccggccgcgg ccccgcgccg ccccgcccgc gcgccggccc      2100
     ccgccgggcg ccccggcccg cggcccggcg ggccgcccgc ccccccggcg ggggcgcgcc      2160
     gcgccccgcg gggcgcccgg gcgccgcggc gcggccgcgc gccggcgccc gggcgccggg      2220
     gggcggcccg ggcccggggc gcgggcgcgc gcggcgcggg cgccggcggc gcgccgcgcg      2280
     ccgcgcgcgc gccccgcgcc gccggcgcgc gggggcaatc agtacatacg aaacatgaca      2340
     atgaacgata tgcccgtcaa ggttccagga gtgctaccca tgtacctgga ctcaggagca      2400
     agtcgacaca tggtaaggga aaagaggtgc ttcgatgagt tatgggacac aaaaccggtg      2460
     attgtccaaa cagctgaaga aaggacacag ctgaggggat caagggaagg gaacattcgg      2520
     gttaagtcaa aagtcggaaa taaagtattc atttccacaa tgtacaacgt actttttgtt      2580
     cccaatttat cctgtaacct tctttcggtg tctcagttag agtcaaacgg caagtctgtt      2640
     ttgtttcaga atggcaaagt taaaattctt gataaggaag gaaacattat tgcagaaggt      2700
     gttaaagaaa atgggctata ctgcctaaaa ttcttcctca tcaattccga agaaaatgct      2760
     catgtgagta aggaagaaca gtatgaactt tggcaccaac gatttggaca tttgggaaaa      2820
     gacaatatgt tcaaactgat taaaaatgac atggttcaag gtttggatat caaaaactct      2880
     tccatttcaa cagagttatg tcaaccatgt ttggcaggaa aacagacaag gaaccctttc      2940
     aataaaaaca aagaaagtcg atcccgtaga ccactggaac tcgtacattc tgatgtctgg      3000
     ggtccaagcc cagaaccaaa ccatgatgga tccaggtatt tcgtcagctt cattgatgat      3060
     ttcacacatt tcaccagaac ttacctgatt tcacataaga gtgatgtctt ccaaaagttt      3120
     caagaatttg aagcccttgc gacagctcat ttttccctaa aaatcactaa actcagaacc      3180
     gataatggag gagagtacta ttcgaatgag tttatcaaat tctgcaagtc aaaaggaatt      3240
     gaattgaccc ctaccgttcc gtacactcca cagcagaatg gagtaagtga acgaatgaat      3300
     aggactctca tggacaaagc tagatctatg atgcatgaca aggacgtacc tgaatctcta      3360
     tggggtgaag ctctatttgt ttctacatac ctcacgaaca gaagcccaac aattgctctg      3420
     gaagcctgca aaactccata tgagttatgg tttggtgata agccagatgt cagcaaacta      3480
     aaagtgtttg gatgtgttgc ttactccctg gtaaatcaag tacacagaag caagcttgat      3540
     aaacggaacc gtatactggg tatggttggc tatgcacata acggatacag actttgggac      3600
     aaagaggaaa gaaagattgt aatatctcga gatgtggtat ttgatgagaa caagtcatat      3660
     tttcagatcc aatccgaatc atcacgcagt aaagaaacgt ctccggtctt ggttgaattc      3720
     tcagatgaac cagttgaact tacacaacct gatgaggatg ttgaaagaga tgttgaatcc      3780
     gatcgatcaa gtgattcaga tgaagatttt caggaagcac ttgatccttt ggatgaggaa      3840
     tttgaaatcc ttaatcgcag aagcggtaga ctacgaagac ctccaaactg gctgagcgac      3900
     tatgaaacag gcttaatagc aggaaacgga tcagccaata ttccacagaa catacgagaa      3960
     ttgatgaata gagatgattg gaatgaatgg aagaaagcta tagctgaaga aatgaaggca      4020
     ttacatgaca acgaaacatg gacattaatc caatcagtac ccgatggaag gaaagctata      4080
     aactccatgt ggatcttcac aatcaaaaac gacacagatt cacctcgcta caaagcaaga      4140
     ttagttgcaa agggatgtgc tcaaagtgca ggaatagact atactgaaac atttgcgcca      4200
     gtagctaaaa tgactacaat acgcactcta ctgtctatcg cagttcagta tgatctacaa      4260
     atccaccaga tggatgtgaa aactgcattt ctaaacggga acttgaaaga agaaatttac      4320
     atgaaattac ctccaggaga agatggaata gttcgtactt gtcaactcaa gaaatgcttg      4380
     tacggactta aacaagctag cagaagttgg aacgaaaggt tcgatcagat cataattagc      4440
     atgggcttta cacgactacg atcagattct tgtgtgtata tcctgaaaga taagaatatc      4500
     tacctcgttt tatatgtgga cgacatgcta atctttggaa aagatgcaaa gtgcattaaa      4560
     tggataaaag aatcattatc taaacatttc caaatgaaag acatcggcgg cgtgaaaaat      4620
     tttcttggtc tggagatctt cagagagact ggagttctgg aagtttctca gcagtcctat      4680
     gttgaaagaa tcctccaaaa ctttggtatg gaaaactgta aacctgtaag tacacctatc      4740
     tcaacctcag gtaaatggaa aagggatgaa ggtattttga caactaagcc ttataaagct      4800
     ctactcggtt gcttgcaata tttagcattg atgagtagac ccgatctctg tttttccgta      4860
     aattttttta gtcaattcca gagttcccca tcagattccc actggtctgg acttcaacgc      4920
     atactacgat atctacaagg gaccaagacg tatcgtttgg tataccatcg tagtacgaac      4980
     gaagcaccat tgacaggata cgcggatgct gattttgcga atggccttga cgacagacga      5040
     tcgacctcgg ggatcatgta tacggttttc ggaaacactg tatcgtggaa gacgaagaag      5100
     cagacattag tggtcctttc atctactgaa gccgaattcg tggccttgtg cgaagcgtca      5160
     aaggaaggaa tgtggctttc gaatctgcta cacgaaattg gaattgacgt attgcccttt      5220
     cggatacatg aagacaacat tccttgcatc agtatcgcgg aggagccacg ccaccatcag      5280
     cgaaccaaac acatcgacat taagtatgca tttgtgagag agctgatcaa agaaaagaag      5340
     attgagttga attacattcc gacagatttt cagctagcag acatatttac taaggcatta      5400
     ggagaagcaa aattcagtaa atttgtctca gcgttaaatt tgaagaaatg aagggaagtg      5460
     aaaatttaaa ttcttattgt gcatttgctt catattttta actatcggtt caggcctctg      5520
     aaccaaactc agatcagaga gaagtagaag agagaaatag tcgttaggag aaacgaataa      5580
     gcggccacac atcgctagcg ttatactgcc gttctacgca tatttgtccc gcggtccgta      5640
     aggtttgcat agaacatggg acaagtaggc gtagaagggc agtaca                     5686
//
ID   Copia-103_AA-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-103_AA_;
KW   Ty1_copia_Ele83; Copia-103_AA-I; Copia-103_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-319
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 319 BP; 82 A; 67 C; 71 G; 99 T; 0 other;
     tgaacagcag ataggtcaac cgtgcgaatg aacagactct gtatccagtt tcaaagttaa        60
     taaacaacgt gtttaaacgt aacaatactt tcagctttcc taagaaagag aagctactgg       120
     tgagtacata agttcgtggt ggaagacttt cctctgaact tagtctaggt tgtgcattca       180
     gctttcaggt gaagattttc acgggaagct tttgcatccg ccctggtttt gctgtttgat       240
     ttggttcgga caacggtttg ccaggtgaag tatttcacgg gtaacctttg tctccactcc       300
     gctctcgcct atttcaaca                                                    319
//
ID   Copia-104_AA-I repbase;    DNA;    INV; 4152 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-104_AA_;
KW   Copia-104_AA-LTR; Ty1_copia_Ele172; Copia-104_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4152
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1660-2007] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2364..4139
FT                 /product="Copia-104_AA-I_1p"
FT                 /translation="MCPLLSDADSSEDEFADAEPHVALPPQSTRLADEQQL
FT                 SRHSGRERRLPGKYNDYICYSSFAGPDEFPQNESSDVTSDPLSYNEAINRP
FT                 DRERWIAAMDNELKALDSNNTWELTDLPEGRKAIRNKWIFKTKRNADGEIS
FT                 RYKARLVVKGCSQRPGIDYEEVYSPVVRYSTIRYMMALAVQYDLDVEQMDA
FT                 ITAFLQSDLKEETIFMEQPEGYEKDPTKVCKLKKALYGLKQSSRVWNRQLD
FT                 EAMRQFGLTRSRMDPCLYFKVHKNEMIFVTIYVDDLLIITNNAYLKKRLKE
FT                 FLNNRFQMKDLGTAQLCLGLRINRDRKGGTLRLDQQHYIEEVLKRFNLNNC
FT                 RPVATPADPGNKLEASTSEETAEEIQEMQNVPYKEAVGCLTYLAQGTRPDI
FT                 LLAVNKVSQFSSNPTRRHWEAVKRIMRYLKGTIDYCLEYSREGDPQFTGYT
FT                 DADWGGDPASRKSTTGYIFKMMGGAVSWNVKRQASVALSSCEAEFVALSHT
FT                 TQEALWWKQLLQEIGSQRSISIFCDNQSAICIAQNEGFNPKTKHISIRFHF
FT                 VKDTLERGDIKLYYIPTQQQPADGFTKVLPKQKHEVFRSYLGIVN"
XX
SQ   Sequence 4152 BP; 1199 A; 882 C; 1143 G; 908 T; 20 other;
     agtggttatg ggcccaggac gtggccgtag cttgaagtaa agtttgtccc tgttctcaag        60
     attagtttga tcgttgaaga agcgccatga ttccgaggga tgtagaccag cagcagaatt       120
     caagcagtag gacgaatacg actagaggcg gtgttgcggc cggatctgga gacggcgtgc       180
     gakccggtgg tgtwgtkcgt gcctacggga acccagtgaa ccttccagcc attgaaaaac       240
     tgcaagggcg tcaaaactac gcatcatggg cgttcgcgat gaagatgacg ctgatacgag       300
     aagggtcstg gcgagctgtk aaaccggcgg aaggcgaggc agttgatccg gaagctagtg       360
     agcgagcgct ggcaacaatt tgcctaagkc tkgagaagaa caactacagc ctagtccaaa       420
     mcgcgamcag tgctaaggac gcatgggaga aactccggaa ggcatttcaa gacgacgggc       480
     tgattcgaag atttggattg ctggaccgct tgacgtcggt gaagctggag aactacggta       540
     ccgtggaaga ctatgtcgat gasttggtgt ccacggctca cgatcttagc gagatcgggt       600
     tcgaagtgaa tgaccagtgg ctggtttcgt tattgttgaa aggacttcca gaatactatc       660
     atccgatggt aatgggattg caagcgtccg gcttggcgtt gacagctgat atggtcaagg       720
     ctaaaatcct tcaagacgtc aagtggccta ttacatcttc cggaagagaa ggcgcacttt       780
     atacgaagca caaccctcac aagtccagaa gaccaaaggg cgcggttgaa aggaaggata       840
     aaacctgttt camttgtaac aagcttggac atttcgcagc ggagtgtcct cagcggcaga       900
     agcaaggtca gaattcaaaa scgaagggca aggctttgtg cgcgatgatg gctgttggca       960
     agggcagcgc agaagaatgg tacttcgact ctgcagctag ctcccatatg acgagaagcg      1020
     aggaaaattt cacgaagcaa gaagtctttg cgcaccccat cgagacggcg aataaccagt      1080
     gtatgatgtc ctcagcsaaa ggggtggtga acctkgatct tcaagaagga cccatcgaag      1140
     tacaggasgt tctgcacgtc ccagatttgg caacaaacct tctttcagtc agcaaaatct      1200
     gtmagaaggg tttgacggtg acgttcactt ccgatcttgt aaagtctgtg atgaagatgg      1260
     agatgtgatt gcttctggga ccgagaagaa tggtttgtac cggctcaact gcaagaaacc      1320
     ggaaacatcg ctatgacaac ggaaacgaag atctggcaca ggaggctagg acacctgaat      1380
     cagcagagca tgaagaaact cgaaacsatg gcagatggaa ttgaactgmg gacggagaag      1440
     acattcgatt gtgtggcctg tgctacagga aaacaagctc gagatccttt ccattcaagc      1500
     acaacgagag cagaaggatt gctggatttg gtacacaccg atctttgtgg accaatagaa      1560
     gagccctcgt tgggttggta gtcgttattt cctaacwttc gttgacgatg ccastcgcaa      1620
     ggtgtttgtc tacttcttga tgtcgaagag cagcgttaag gatgtgttta tgaacttcaa      1680
     atccatggca gagcggcaga ctggaagaaa cttgaaagtc ttgaggtcgg acaatggctc      1740
     agaatatgtc aatcggcgat ggaagcgtgc atgggaagag acggtataat acatcaaaca      1800
     acttgttcgt acacgcctca gcagaacgga gttgccgagc gtatgaatcg gacgctcgta      1860
     gaaaaagcaa ggtgcatgct gaacgattcg aaactctcaa agaagttctg ggcagaggca      1920
     gtctcgaccg cagcatatct cgtcaaccgg agtccctcac gttcattgga atctataacg      1980
     ccagaagagg cgtggagtgg cagaaaacca gtgctgaaac atctcaagat ttttggttca      2040
     aaggcgatga ttcatgtacc caagcagaag agacagaagt tcgacccgaa ggccgttgag      2100
     ggaatctttg tcgggtatgc ggagaagtcg aaaggatacc gtattttcat gcccaacgac      2160
     agcagcatcg taacaagtcg tgacgtgaag attatcaatg agggagaatc ttcggcgatt      2220
     gatgaagagt acataggtga agtcgaattc atggagcttc attcgtggat cgagcagatt      2280
     gaacaaaccg aagtggttcc catgtgcaac atgatgctgt ttctgttgtc gttcccgagg      2340
     tcgttccaca tgatgacgat gagatgtgtc ccttgctctc ggatgccgat tccagtgaag      2400
     acgagtttgc cgatgctgag ccgcacgttg cgctcccacc gcaatcaaca agactagctg      2460
     atgagcagca attgtcgagg cacagcggtc gggagcgccg gttaccaggc aagtacaacg      2520
     attatatttg ttatagttct tttgctggcc ctgatgaatt cccacagaac gagtcttccg      2580
     atgttacgag tgacccgctg agctacaatg aggcgatcaa cagaccggat cgtgaacgat      2640
     ggattgctgc aatggacaac gaactcaagg cgctagacag caacaacacg tgggaactga      2700
     ccgacttgcc cgaaggaagg aaggccatac gcaacaagtg gatattcaag acgaaacgaa      2760
     atgcagatgg tgaaatctcc cggtacaagg ccaggcttgt ggtgaaaggc tgctcacaac      2820
     gtcctgggat agactatgaa gaagtgtatt ctccagtggt gagatattca accatacgat      2880
     acatgatggc tcttgcagtg cagtatgacc tggacgtgga gcagatggac gctatcacag      2940
     cgtttctgca gtcggaccta aaagaagaaa ccatctttat ggagcagcca gaaggttacg      3000
     agaaggatcc aaccaaggtc tgcaaattga agaaagcctt gtatggattg aaacaatcga      3060
     gcagagtgtg gaaccggcaa ctggacgaag cgatgcggca gttcggactt actcgttcca      3120
     gaatggatcc atgtctgtac ttcaaggtgc acaagaatga gatgatcttc gtgacgattt      3180
     atgtggatga cctgctgatc attaccaaca acgcgtactt gaagaaaagg ctgaaggagt      3240
     tcttgaacaa tcgcttccaa atgaaggacc ttggcacggc gcagttatgt ttggggctac      3300
     gaatcaatcg tgatcggaaa ggaggcacac taaggctcga tcagcaacat tacatcgaag      3360
     aagtactgaa gcgtttcaat ttgaacaact gtagacctgt ggcaacccca gcggatcccg      3420
     gtaacaagtt ggaagcttca acatctgaag aaacggctga ggagattcaa gaaatgcaga      3480
     acgttcccta caaggaggca gtgggatgct tgacctacct ggctcaaggc acgaggccgg      3540
     atattttgtt agcagtaaac aaggtcagtc agttcagtag taatccaacc cgtcgccact      3600
     gggaagctgt gaaacgaatt atgcggtatc tcaagggaac catcgattat tgcttggagt      3660
     acagcagaga aggcgatcca caattcactg gttatacaga cgcggattgg ggaggagatc      3720
     cagccagcag gaagtcaacg acaggttaca tcttcaagat gatgggagga gcagtttcct      3780
     ggaatgtaaa acgacaggcg tcagttgcgt tatcatcatg cgaggcggaa tttgtagcac      3840
     tttcccacac aacccaagag gccctatggt ggaagcagct attacaggag atcggaagcc      3900
     agcgttcgat ttctattttc tgcgataatc aatccgcgat atgtattgct caaaacgaag      3960
     gattcaaccc caagaccaag catatttcga ttcgattcca ttttgtgaag gacactctgg      4020
     agagaggaga tatcaagctg tattacatcc caacacaaca gcaacccgca gatggcttca      4080
     ccaaggttct accgaagcag aagcatgaag tatttcgaag ttatttagga atagtaaact      4140
     aaggaggagt gt                                                          4152
//
ID   Copia-104_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-104_AA_;
KW   Ty1_copia_Ele172; Copia-104_AA-I; Copia-104_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-154
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 154 BP; 49 A; 35 C; 21 G; 47 T; 2 other;
     tgagataacg aagttamcta agtagttsac cattcccgga gttactatag tcaaccctag        60
     caacctgatt gtttagcagg tataagcagt tataataaat tttcattcca ccttcaagct       120
     tacaccaaac cagacgttct ttcattaact ctca                                   154
//
ID   Copia-105_AA-I repbase;    DNA;    INV; 4071 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-105_AA_;
KW   Copia-105_AA-LTR; Ty1_copia_Ele38; Copia-105_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4071
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1506-2045] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4061
FT                 /product="Copia-105_AA-I_1p"
FT                 /translation="MEEEKFDRVLLPLFDGSNFAAWKFRMLILLEEHELEE
FT                 CIHTYAAEVEELVVQEGDTNEVKAAKAKKLEKRMKKDRRCKSLLVSRIHDT
FT                 QLEYIQGKQFPKDIWDALHRVFERRSIASRMHLKREMLQLRFEGGNLQQHF
FT                 LRFDKLVREYRSTGAVLEDLDVVCHLLLTLGPSYSGVVTALETMPEENLSL
FT                 EFVKCRLLDEETKRRGIESSSSSGGDAAFSGAKQVKKKKLICFHCKKEGHK
FT                 QIDCSDRKQQGNQKNHRKSKANVAEADAGKGICFVGVSGGMDLPEDQRTRW
FT                 YIDSGATDHLVRDKVLFSELHRLKKPVEIAVAKDGETIVAEFAGTVKIISV
FT                 VNGKPIDCTISDALYVPKLRCNLFSVMKVEKAGMRVVFECGKAKVYNGSEI
FT                 VASASRREKLYELDFYSTRQSAGDALLSCGRIRKSSELWHRRFGHLNENSL
FT                 KQLMQSGMVSGMNMSSVDNSDKDMIVCESCVVGKQTRKPFSSSVAKRASRV
FT                 LELVHTDVCGPVTPVGLSGVQYFVTFTDDWSHFTVVYLMQSKDQVVEYFEE
FT                 YEAWATAKFGQKISRLRCDNGGEYKNKRFLKFCRSKGIQIEWTVPYTPQQN
FT                 GLSERLNRTLVEKARAMLKDSGVDKRFWGQAVLTAAFLTNRSPTNALSTKQ
FT                 TPFERWESRKPNVSNVRVFGCKVFVHVPDELRRKLDSKAWSGIFLGYSHNG
FT                 YRVWNPMKKQIVVARDVDFVEDSVSLVKRNLPVDQVVHVPAEEEDDANSEL
FT                 EVPEEDPSDGEFESFVEEEPAEEEEEIASGGRPQRNRSAPAWHQDFEMEYA
FT                 SFALSAVNYVDEIPGTIAELQKRDDWKEWKAAIEDEMSSLKRNNTWTLVKK
FT                 PEGRSVVSCKWVFRIKRGEAGRPEKYKARLVARGFSQKKGFDYSETYSPVA
FT                 KMDTLRAVLALANQSGMHIHQMDVKTAFLNGELSEEIFMAQPDGFEQGRGL
FT                 VCRLNRALYGLKQASRAWNDKFHRFVEKLGFTRSDNDQCLYTLGSGKEQVI
FT                 PVLYVDDVLIASSSLKILQEVKRKLSERFEMTDSGEVRQFLGMNIERDFEE
FT                 GVLRISQRNYLDGLLRRFDMSECKPRSTPIENRLKLSKADEKQRTDKPYRE
FT                 LIGCLMYASLTTRPDLSAAINFFSQFQACPSDEHWNYLKQILRYVKGTLDV
FT                 GLVYRKREGAALLEVFTDADWANSNVDRRSVSGYVCKIYGCTVSWTTRKQQ
FT                 TVALSSTEAELAALCLAICHVVWMRRLVCDLGRKYGQAISVFEDNQSTIRI
FT                 AEDSKDHSRLKHVDTKFHFVRDLVQRGVVAIKYVRSSDQEADIMTKGLPVA
FT                 AFRGLCAKLGLERREDYRG"
XX
SQ   Sequence 4071 BP; 1063 A; 854 C; 1249 G; 905 T; 0 other;
     ggttgtgggc cccggtcgcg ctttgatcga aaagtagtcg ggagtgtcgt ttttttgcgt        60
     ttttcggtat ggaggaggaa aagttcgatc gtgtgttgct gccgctgttc gacggctcga       120
     actttgctgc ctggaagttt cggatgctga tactcttgga agagcacgag ctcgaagagt       180
     gcatccacac gtatgcagcg gaggtggagg agctggtcgt ccaggagggt gacacgaacg       240
     aagtgaaagc cgcaaaagcc aagaagctgg agaagcgtat gaagaaggac cgccggtgta       300
     agtccctgct ggtgtcgaga atccacgata cgcagctcga atatattcag ggcaagcagt       360
     ttcccaaaga tatctgggat gccctgcatc gtgttttcga gcgtcgcagc atcgcaagcc       420
     ggatgcattt gaagcgggag atgctgcagc tgcgattcga aggaggaaat ttacagcaac       480
     attttcttcg cttcgataag ctggtacgtg agtatcgatc gactggcgct gttttggagg       540
     atttagacgt ggtttgccat ctcctactaa cgcttggccc ttcgtattcc ggggtagtta       600
     cggcactcga gacgatgcca gaagaaaatc tatcgctcga gtttgttaaa tgtcgactac       660
     tggatgaaga aaccaagcgc cgtgggattg aatcgtcatc ctcgtcgggt ggagatgctg       720
     ctttttccgg agcgaagcag gtgaagaaga agaagctgat ttgttttcac tgcaagaagg       780
     aagggcataa gcaaattgat tgctccgata ggaaacagca ggggaaccag aagaatcatc       840
     gaaaatcgaa agctaacgta gctgaggcgg atgctggaaa aggaatctgt ttcgtcggtg       900
     ttagtggtgg catggatctg ccggaagacc agcgtacccg atggtacatc gattctggtg       960
     caacggacca tctagtgcgg gacaaagtgt tgttcagtga gcttcatcga ctgaagaaac      1020
     cggttgagat cgcggtggca aaagacggtg aaacgatagt ggctgaattt gccggcaccg      1080
     tgaagattat atcggtagtg aacggtaaac cgatcgattg cacgatttca gacgctttgt      1140
     atgtgcctaa actgcgttgc aacttgtttt ctgtgatgaa ggtggagaaa gcgggaatgc      1200
     gtgtcgtttt cgagtgcgga aaagcgaagg tgtataacgg ctccgaaatc gtcgcgagtg      1260
     cgtctcggcg tgaaaaacta tatgaactcg atttctattc gaccaggcaa agtgcgggtg      1320
     atgccttgtt gtcgtgcggt cgaattcgta agagttccga gctgtggcat cgtcggttcg      1380
     gccacctgaa cgaaaacagt ttgaagcaac tgatgcagag cggaatggtg tcgggaatga      1440
     acatgagttc cgttgataac agtgataagg acatgattgt gtgcgaatcg tgcgtcgttg      1500
     ggaaacagac gaggaaaccg ttctcttcgt cggtcgcgaa gcgcgcgtcg cgtgtgctcg      1560
     agcttgttca cacggacgtg tgtggccctg taacgccggt tgggctgtcg ggtgtgcagt      1620
     atttcgtgac attcaccgac gactggagcc atttcacagt cgtgtacctg atgcagtcga      1680
     aagaccaggt ggtagagtac tttgaggagt acgaggcctg ggccacagcg aaattcggac      1740
     agaagatttc ccgcctccga tgcgacaacg gaggggaata taagaacaag cgattcctga      1800
     aattctgtag aagcaaaggc attcaaatcg aatggacggt cccttatacg ccccaacaga      1860
     atgggctgag cgaacgactg aatcggacgc tagtcgaaaa ggctagagcg atgttgaagg      1920
     attctggagt tgacaaacgg ttctgggggc aggctgtgct gactgcagcc tttcttacca      1980
     accgaagtcc aacgaacgca ctgagtacga agcaaacacc atttgagcgg tgggagtccc      2040
     ggaagccaaa cgtatctaac gtgagagtgt ttggttgtaa agttttcgtg cacgtcccgg      2100
     atgaactgcg acggaagctg gactcgaaag cctggagcgg aatcttcctg ggatacagtc      2160
     acaacggata cagagtatgg aatccaatga agaagcagat tgtcgtcgcg cgtgatgttg      2220
     acttcgtgga agacagtgtt tcgttggtga agagaaacct acctgttgat caagtggttc      2280
     atgttcctgc agaagaagaa gatgatgcta atagtgaact ggaggtaccg gaagaagacc      2340
     cgtcagacgg cgagtttgaa agcttcgtag aggaagaacc agcagaagaa gaagaagaaa      2400
     tcgcctccgg cggaaggcca cagcggaaca ggtcggcgcc agcatggcat caagatttcg      2460
     agatggaata cgcaagtttc gccttgagtg cagtaaacta cgtggatgag attcccggaa      2520
     cgatcgctga gctccagaag cgcgacgact ggaaggagtg gaaggcagcg attgaagacg      2580
     aaatgagttc tctgaagcgg aacaatactt ggacacttgt gaagaaaccg gagggacgtt      2640
     cggtggtgtc gtgcaagtgg gttttccgga ttaagcgtgg cgaagcaggc agaccggaga      2700
     aatacaaggc caggttggta gcgagaggct tcagccagaa gaagggtttc gattactccg      2760
     aaacatactc tcctgtagcg aagatggaca ccttgcgggc agtgttggcg ttggcgaacc      2820
     agagcggtat gcacatccac cagatggacg ttaaaaccgc gttcctcaac ggtgaactgt      2880
     cagaggagat ctttatggct caaccagacg ggtttgagca ggggagagga ctagtatgcc      2940
     gcctgaatcg agccctctat gggctgaagc aagcttcgcg agcatggaac gacaaattcc      3000
     atcggttcgt cgagaagttg ggcttcacac gtagtgacaa tgaccagtgc ctctacacgc      3060
     ttggatccgg caaggaacag gtgatcccgg tgctgtacgt cgacgacgtc ttgatcgcaa      3120
     gttcgtcgct gaagattctc caagaagtca agcgaaaact gtcggagcgg ttcgagatga      3180
     cagactccgg cgaggtaaga cagttcttgg gcatgaacat cgagcgtgat ttcgaagaag      3240
     gcgtgttgag aattagccaa cgaaactacc tggacggatt gctcagacgt ttcgatatga      3300
     gtgaatgcaa gccgaggtcg acgccgatcg agaatcggct gaagcttagc aaagcggacg      3360
     aaaagcagag aacggataag ccgtaccgtg aactcatcgg ctgtcttatg tacgcgtcgc      3420
     tgactacaag gccggacctg tcggcagcta tcaacttttt cagccagttt caagcgtgcc      3480
     ctagcgacga gcactggaac tatttgaagc agatactgag gtatgtaaaa gggacgctag      3540
     atgttgggct ggtgtatcgg aagcgagagg gtgctgcttt gctggaagtg tttaccgatg      3600
     cagattgggc gaatagcaac gtggacaggc gatctgtaag cggatatgtg tgcaagatat      3660
     atgggtgtac tgtaagttgg acgacccgga agcaacaaac cgttgcttta tcgtctaccg      3720
     aagcggagct agctgcgctc tgtttggcca tctgtcacgt cgtctggatg agaaggctgg      3780
     tgtgcgatct gggaagaaaa tatggacaag cgatatcggt gtttgaggac aatcagtcca      3840
     caatccgtat agctgaggac tccaaggatc atagccggct taaacacgtg gacacgaagt      3900
     tccactttgt acgtgacctt gtgcagcgtg gagttgttgc catcaagtac gtgagatcat      3960
     cggatcaaga agcggacatc atgaccaaag gtctaccagt ggccgctttc agagggcttt      4020
     gtgccaagtt aggactcgag cgtagagaag actaccgtgg ttaagcaggg g               4071
//
ID   Copia-105_AA-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-105_AA_;
KW   Ty1_copia_Ele38; Copia-105_AA-I; Copia-105_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-240
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 240 BP; 61 A; 56 C; 38 G; 85 T; 0 other;
     tgttgagtgt aaccaccgta ctctagttgc ccccactttg ttctgctcct atgagcgtac        60
     ttatgttttg ccccctttta tttctacacc tttgaagttc tttcggtcgc tatgaaagtg       120
     acatctgatg taaacaaatg ttaaagtgaa aaacacgttt cgaataaaac catcttttag       180
     ttaaagttaa tcgcggtttt actattgtaa tttcctcccg gcctatccga aaccacttca       240
//
ID   Copia-106_AA-I repbase;    DNA;    INV; 4204 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-106_AA_;
KW   Copia-106_AA-LTR; Ty1_copia_Ele116; Copia-106_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4204
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1535-2038] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1091..3328
FT                 /product="Copia-106_AA-I_2p"
FT                 /translation="MLIGERRQPAVVKDVLYVPGLQCNLFSVRRVEDNGMA
FT                 VKISNGSVMISKGERVMATGRRAGQLYKMNIELRGSAGASSEPGAMAAKQD
FT                 CFDLWHRRLGHLGEASMKTLWKHGMVETSTKVLDWPNQCICEVCIQAKQTR
FT                 NPFDDVAERRATRPLEVIHSDVCGPFTPRTWDNKRYFLTFIDGYSHFTVVY
FT                 LLHSKDEVQEKFEEYYARVTAFFGTRVARLRCDNGGEYLGGSFQKFCRSKG
FT                 ISIETTVPYSPQQNGVAERMNRTLLEKSRAMIQDAGLPKSMWGEAVLTAAY
FT                 VTNRSPTAALKEKKTPFEAWYRKKPNIDKMRVFGSVAHTWIPKEKRTKLDP
FT                 RSEKNILVGYTTNGYRIWNAKKKKIFISRDVVFDEKRSGSEQEKPVTQVLY
FT                 RSYAESEVSEDRSVKELDMTEPTDAIANQPEEKLTDEEGSEVTDDDGEGNH
FT                 DDDEIDSALPSQPERDNCPAEVITRRSERERRLPGKLLDFITGSRATTAAE
FT                 CFSGVSDGFGESTMAFALNAEMFVDNLPTTIDGLRRRDDWNDWKQAIGSEL
FT                 ESLRKNETWELVPRPQGKNIVDCRWVFRIKRDEAGNVDRYKARLVAKGYSQ
FT                 RKGFDYDETYAPVAKGATVRALLAVANQMRYHIHQMDVKTAFLNGKLTEEI
FT                 FMRQPEGLEPTDPGLVCRLKKSLYGLKQAPRSWNSEFHNFILQLGFQRSNA
FT                 DSCLYWRRQGNEVVYLLLYVDDIILVSGRLDLIAEIKKKLSSTNLK"
XX
SQ   Sequence 4204 BP; 1156 A; 959 C; 1230 G; 858 T; 1 other;
     ataggttatc ggcccaggac agaaaggaat cagttcttca agatgtcgga agaaaagctt        60
     tggctgtttg acggaaccaa ctttggtaat tggaagttcc ggattgaagt acttctggaa       120
     gacaggaaca tgctggaatg tttgaccaag gccatcgacg aggaggagta ttcgaaggat       180
     ctggcgacgg acacagcgga ggtgcgtgcc gagaagaaga agaagctcga agctcgatgg       240
     gccctggatc gaaaatgcaa gaacctgatc atcaaccgga tcgcggaaga ccaattggag       300
     tacgtcaaag agaagaggac ggccaaggat gtctgggatg ccctacggaa caatttcgaa       360
     caaatcggaa tcgctggtaa gttgatcctg aggaagcaat ttcaagagct gaagctgtcc       420
     gaaggtggtg atgtgaagca atcctgctga agtttgaaaa ggttctgcga gagctgcggg       480
     cggcmggagt gaacattcag gaagaagacg tcgtttgtca gcttctgctg gcgcttccga       540
     agtcgtatga tgcgctcatt actgcactgg agacgatcca accgcaacag ttgactctgg       600
     agtacgtgaa gaagcgccta ttggacgaac aagcgaagcg agcgaatcaa tcaagccgcg       660
     gcggagattt cggccaggcg agcgactcgg cgttcgtcgg aaagaaaatg gggcttaagt       720
     gctttggatg cggtaagctt gggcacaaga gagccgaatg tccggaaaat tgtcctccaa       780
     acgaatctgg tcaccaagga aaccgaaaaa gcggagggaa ggttaaccgg aagcagaaat       840
     atcgagcgaa cgtcgctgag gagtcggaag tcgcgttcgt cgctaccgcg acgggagatt       900
     gtttgtcggc ttccacggca acggaagacg tgaaaatcga ttgggttctc gactcgggag       960
     ccacggacca tatgctgagg agcaaggaat ttttcgagga actacacccg ctagctgaga      1020
     aggtacgtat agcagtggcc aagtgcggcc aggcgctcta tgcgagtacg cggggaccgt      1080
     gagagtgaac atgctgatcg gagaaagaag gcaaccggca gtagtgaaag acgttctgta      1140
     cgtaccggga ctgcaatgca atctcttctc ggtacggcgt gttgaagaca acggtatggc      1200
     ggtgaagatt tcgaacggct ccgtgatgat ttcgaagggt gaacgggtga tggctaccgg      1260
     tcggagagcc ggacagttat acaaaatgaa tatcgagtta cgtggaagtg caggtgcatc      1320
     atccgaacct ggcgcgatgg ccgcaaagca agattgcttc gatttgtggc accggcgtct      1380
     cggccatctg ggagaagcaa gtatgaaaac tctttggaag catgggatgg tggaaacgtc      1440
     gacgaaggtt ctcgactggc ccaatcagtg catctgcgag gtatgtatac aggcgaagca      1500
     aacccgaaac ccgtttgacg atgttgcaga gaggcgtgcg acgcgcccgt tggaagtaat      1560
     ccactcggac gtgtgtggcc cgttcactcc gaggacctgg gataacaagc gttactttct      1620
     gacgttcatc gacgggtata gccattttac ggtcgtgtac cttctacaca gcaaggatga      1680
     ggtgcaggaa aaattcgagg agtactacgc tcgggttacg gctttcttcg gcactcgtgt      1740
     ggcaagactg aggtgcgaca acggcgggga gtatcttgga ggatcgtttc agaagttttg      1800
     tcgctcaaaa ggtatcagta ttgaaacaac cgttccatac agcccacagc agaacggtgt      1860
     agcagagcga atgaatcgca cccttctgga gaagtcccgt gcgatgatac aggatgctgg      1920
     tttgcccaaa tccatgtggg gtgaggcggt actaaccgcc gcatacgtga ccaaccgtag      1980
     tccaacggca gcgctgaaag agaagaaaac tccatttgag gcctggtata ggaagaaacc      2040
     gaatatcgac aagatgcgtg tttttggatc agtggcgcac acttggattc caaaggaaaa      2100
     gcggaccaaa ctggatccac gttctgagaa gaatattctg gtaggctaca ccacgaatgg      2160
     ctatcgcatt tggaacgcaa agaagaagaa gattttcatt tcaagagacg tggtattcga      2220
     cgagaagaga agtggttctg agcaagagaa gccggtcact caagtcttat acagaagtta      2280
     tgcggaatcg gaggtatcag aagaccgttc ggtaaaggaa ctggacatga cggagcctac      2340
     ggatgcgatt gcgaatcaac ctgaagaaaa gctaaccgat gaggaaggca gtgaagtcac      2400
     tgacgatgat ggcgagggca accacgacga cgacgagatc gacagcgcgc tcccttcgca      2460
     accagaacgt gacaactgcc cagcagaagt gatcacgagg cgcagcgaac gggagcgcag      2520
     acttcccggt aagttgttag atttcattac cggctcaaga gcaactactg ccgctgaatg      2580
     tttctcaggt gtttctgatg gcttcggtga atcgacgatg gcgtttgcgc tgaacgccga      2640
     gatgtttgtg gacaacctgc cgaccacgat tgacgggctg cggagacgag acgactggaa      2700
     cgattggaag caggccatcg gaagtgagct ggaatcgttg cgcaaaaacg agacttggga      2760
     acttgtgccg cggccacaag gaaagaacat cgtcgactgc agatgggtct tccgcatcaa      2820
     gagggacgaa gctgggaatg tcgaccgtta caaagcccgt ttggtcgcaa agggctattc      2880
     ccagaggaag ggcttcgatt acgacgagac ctacgcacca gtcgcaaagg gagccacggt      2940
     gcgtgcgcta ctggcggtag caaatcaaat gcggtatcac atccatcaaa tggacgtaaa      3000
     aaccgcgttc ctcaatggaa aattgacgga ggaaatcttc atgcgacaac ccgagggact      3060
     ggagcctacc gaccccggcc ttgtctgtcg gctgaagaaa tcgctctatg gactgaagca      3120
     ggccccaaga agctggaatt cggagttcca caactttatc ctgcaactgg gcttccaacg      3180
     ctcgaacgcg gacagctgtc tctattggcg gcgacagggg aatgaagtgg tctatctcct      3240
     tctttatgtc gatgatatca tcctggtgtc gggcagactg gacctaatcg ccgaaataaa      3300
     gaagaaacta tcatcaacca atttgaaatg acggacattg gcgagatgaa gacgtttctg      3360
     ggcctgaaga ttgatcgaga ccgacgaaag ggactactga agataagtca acccaagtac      3420
     atcgctgacc tgctgcgacg ttttggaatg aacgactgca aaccaacaac gacaccactg      3480
     gaaccgaatc tcaaattgga gcgatgcaaa ggtgaatcac tgactaccga gccctaccgc      3540
     gagctgatcg ggtgtctgtc atatctggcg ctttcgtcaa gaccggatat ctgtgcagcg      3600
     gtgaacttct tcagcaaatt tcaatcagca ccaacggacg cacactggag taatcttaaa      3660
     cggattcttc gctaccttaa gggaaccgca aatcacggac tggttttcca aagacagcaa      3720
     gcttcgaagc ctctggaggg atacgctgat gctgactggg gcaacgatcc ggatgaccgc      3780
     aggtcgatct caggaaatgt tttccaggtt ttcggtggga ccgtctcgtg gatgactcgc      3840
     aaacaagcta cggtggcatt atcttcgacg gaagcggagt acgtctctct cagcaatgcc      3900
     gcgtgtgaag ccatctggtt gcgaaatctc atcctggaac ttggtgtcga actgcagcat      3960
     ccagtgccct tattcgaaga caaccaatcc tgcatctgta ttgccgagga gccccgtgac      4020
     cacaagcgaa tgaaacacgt ggacatacgc tacaatttca tccgtgaaaa gctgcaggaa      4080
     gggctgttca agatccacta cataccaaca ggccaacagg tagcagacct gttcaccaaa      4140
     ggtttggcgc gtggaccatt tgagacgctt agagataagt taggattgtt cggttgagcg      4200
     ggcg                                                                   4204
//
ID   Copia-106_AA-LTR repbase;    DNA;    INV; 147 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-106_AA_;
KW   Ty1_copia_Ele116; Copia-106_AA-I; Copia-106_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-147
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 147 BP; 49 A; 32 C; 23 G; 43 T; 0 other;
     tgttagatag caaccgacca ctttgcatag caacttagga caacaagctg tagtatgcca        60
     tgattagtat gtaataaaaa ttttcatcat tcctactgtt accactaacc aaaccagacg       120
     tttagtctag aagctctgct gatatca                                           147
//
ID   Copia-107_AA-I repbase;    DNA;    INV; 4892 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-107_AA_;
KW   Copia-107_AA-LTR; Ty1_copia_Ele166; Copia-107_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4892
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1603-2100] - Integrase core
CC   'TTTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           553..2169
FT                 /product="Copia-107_AA-I_1p"
FT                 /translation="MDVLFGQLQSAGLVLDEKLQIAMVLRSMPESYHFLAS
FT                 TLEARPDQDVTMGLVRSKLLDEYRKRAERKGPPTGEEQVLKAEANKQKVCF
FT                 FCNKPGHYKRDCRKFLALKEKRYDGESAGSKNAARKKKQAKQAKETTCDAV
FT                 SFSARELGRSVAGKVKASSWTIDSGASCHMTSCEEFFGKLEESPVTTVVMA
FT                 DGNRAKSSGVGCGTIRTVDGRGKPMNVQLNNVLFVPDLDGGLLSVSKIVEN
FT                 GFDVKFGQNGAEIVDSTGKIVALGEMDGGLYILKEAGHKALAAGQCHTVNC
FT                 QHTWHRRLGHRDSTVLDRIRKEDLVAGVKVIDCGSRAVCECCLEGKMARQP
FT                 FPHQAERRTTRPLQLVHTDLCGPMQNVTPGGNKYFMAIIDDFSRYIVLYLL
FT                 KDKSEATACIKNYVRFTENQFGRKPALIRSDRGGEFVNKELEQFYRSEGIQ
FT                 SQLTAGYSPQQNGVAERRNRYLKEMSVCMLLDAGLEKCFWGEAIATAAFIQ
FT                 NRLPSRSVSKTPYELWTGRKPDLGNLKVFGCEAYVHVPDVKRS"
XX
SQ   Sequence 4892 BP; 1321 A; 1047 C; 1370 G; 1149 T; 5 other;
     tttccttccg ataggttatg ggcccaggcg cgaatcggta aaattcggtc ggtgcggagt        60
     ggaaaatagg actttttctc gaattgcgtc gcggcgtgat tttcggccgg tgttcggcgt       120
     gcgcagtagc tgactcgttc gacgtttgct ctttttgagg tggtggagcc aatcaccgac       180
     agtggaatgg cggatcccgg aagattttcg atcgccaagc tgggaaacaa caactatgca       240
     gcgtggaaat tccagatgca gatgttcctt gttcgcgagg aactctggaa tgttgtgtcc       300
     gaagctacac cagcagcccc aatcccggac gcatggcaca aggcggacaa gaaggccctg       360
     gcaactattg cgttgagcat tgaacagagc caatatcccc tcataaaaga ttgcagtaca       420
     gctaaggata tgtgggaggc actaaagcag taccatgaga aaactactgc tgcgtcacag       480
     ctgtcgctcc tcattcggct gtgcgmtgca aaggtakgtg aagaaggaga tgttgaaaag       540
     cacctacttg acatggatgt gcttttcgga caactgcaga gtgcagggct agtgctggac       600
     gagaaattgc aaattgcaat ggttctccgt agtatgccag agtcctatca ttttctggcg       660
     tcgactctgg aagcacgtcc ggatcaggac gtaactatgg ggctagttcg atcgaagcta       720
     ctcgacgagt atcgcaagcg agctgagcgt aaaggaccgc cgacgggaga ggagcaggtg       780
     ctgaaggcag aagcaaataa gcagaaggtg tgcttcttct gcaataagcc aggtcactac       840
     aagagggact gccggaagtt tctggcactg aaggaaaagc gctacgacgg tgaatctgcc       900
     gggagcaaaa atgctgcaag gaagaagaaa caagccaagc aggccaagga aacaacttgt       960
     gatgctgtaa gtttttcggc tcgcgaattg ggccgatcgg ttgctggcaa agtgaaggct      1020
     tcatcgtgga cgattgatag cggcgcatcc tgccacatga ccagctgtga agaatttttc      1080
     ggtaagctgg aagaatcgcc ggtgactact gtggtgatgg ctgatggtaa tcgagccaaa      1140
     tctagtggcg tcggatgtgg aacgattaga accgttgatg gaagaggtaa gcccatgaat      1200
     gtccagctca acaacgtatt gtttgtaccc gacttggacg gcggattgct atcggttagc      1260
     aagatagtcg aaaacggttt tgacgtcaag ttcggccaaa atggcgctga aattgtggat      1320
     tctactggca agattgttgc acttggagag atggacggtg gattgtacat tctgaaggag      1380
     gctggtcaca aagcacttgc tgcgggtcag tgccataccg tcaattgcca acacacctgg      1440
     catcgtcggt tggggcaccg tgactccacc gtcctggaca gaatccgaaa ggaagattta      1500
     gtcgctggtg tgaaggtcat cgattgcgga tcaagggctg tatgtgaatg ctgtctagag      1560
     gggaagatgg cacgtcagcc gtttccccat caagcggaaa gacggactac gcggccattg      1620
     cagctggttc atacagactt gtgtggaccg atgcagaatg tcaccccggg cggcaataag      1680
     tacttcatgg cgattatcga cgatttcagt aggtacatcg tcttgtatct cctgaaagat      1740
     aaatccgagg caacagcgtg catcaagaat tacgttaggt ttactgagaa ccagttcggc      1800
     aggaaaccag cactcattcg ttctgaccgt ggcggcgaat tcgtgaataa ggaactggag      1860
     cagttctacc gttcagaggg aatccagtcg cagctgaccg ccgggtattc tcctcagcag      1920
     aacggagtgg cggagcggcg caatcgatat ttgaaagaaa tgtcggtttg catgctactc      1980
     gacgctggat tggagaagtg cttctggggc gaggcaatag caacggcagc cttcattcaa      2040
     aatcgcctcc cgtcgcgatc cgtaagtaaa accccttatg aattgtggac aggacgtaaa      2100
     ccggatcttg gtaaccttaa ggttttcggc tgtgaggctt acgtccacgt gccggacgta      2160
     aagcgcagta wgctcgacag taaagctaaa aaaactaccg aaaagctaaa cattacatat      2220
     aatttgcaat tggattagat ggacaaattg atgtgaagat ttgcgaaaaa gttacacgtc      2280
     ttctcagtga ggatcgaact cacgacttct cgatctctag ttggggcgcg ttaaccacta      2340
     cgccatgaga gggactcatg aacgcagaag ttaacctgaa ttcgatttca gctcaataat      2400
     cacgtggtcc tctttcgcaa agtgcacctc tttcggaaga attagatgcc catcccatgt      2460
     tccgtaaccg gtcgtttgtg aacgtcgcga cccattggaa gcccacacaa tagaaacctc      2520
     agccagcgca gttgctggct agtgtagtgt gctattccta tacctaaaaa acaatgcgct      2580
     ctcgggctag gcattggata tatatagaaa gcgttgtgtt tggatgggca tctaattctt      2640
     ccgaaagagg tgcactttgc gaaagaggac cacgtgatta ttgagctgaa atcgaattca      2700
     ggttaacttc tgcgttcatg agtcctctca tggcgtagtg gttaacgcgc cccaactaga      2760
     gatcggggag tcgtgagttc gattctcact gagaagacgt gtaacttttt cgcaaatctt      2820
     cacatcaatt tgtccatcta atccaattgc aaattatatg taatgtatta gcttttcggt      2880
     agttgttaaa cttccactcg gctggttggc cgtaaaccac gattcataat taaaacaagt      2940
     actaaaaaac tagtttttgt tggctatgac tgcaaggcga aggcgtatcg ctttctcgat      3000
     aaggcaaaaa gaaggatcac cataagccgg gatgctcggt tcctagaagt gggttcagag      3060
     atgcaggagg agaaagtttc ggtcgttcca gatcctgaaa ccaagctgga ggctgacatc      3120
     gagaagcaac aggaagtagt acagctggag tcggctccgg agaatgagtc agatagtgaa      3180
     gaggattgga acagcattgc ggacgaatct gaatttgagg ggttctattc ggatattgac      3240
     aacgaatttg aaggcgagga tctgaatcca gctggaagct caagtgtaag agagcaacgt      3300
     gtgcgacaac ggcggcgccc aagaaggttc gacgattttg tggtaggtgc tgctaaagtg      3360
     gtggaccatg ttccgtcaac gtacatggaa gcagtgaatt gccaggataa agaaaggtgg      3420
     atagaagcaa tgaatgcgga atacaattct catcagacac gaggtacgtg gactcttgtg      3480
     ccaccaccac tgaatcatcc aatcatcgga tcaaaatggg tgtttcaacg aaagaaagac      3540
     acgtcaggcc aaacggtgcg ctacaaagca cgatttgtag cccaaggcta ttcccagcaa      3600
     tatggagtgg atttcagcga cgttttcgct cctgtcgcga tgcagtcgac gcttagggta      3660
     ctgttggcca tcgccggaca acggaaactc gaggtaagac acgctgacgt taaaagtgcc      3720
     tacttaaacg gaaagctgga ggaagacgtt tatgtacgac agcctattgg attcgaggaa      3780
     ccgggaaagg aggaacatgt ttgcaagctc cataagagtt tatggcttga aacaaagcgc      3840
     gagagtatgg aatactacag tggctgtgaa gctgggtttc catcaatcgt tgtctgaccc      3900
     atgtctctca tgaaacgatg gcgagtggtg aatggattta cttgctaatc tatgttgatg      3960
     atatgatcct cgtttgcaaa gaagcagagc agattacgat tgtcggaagg agttacagcg      4020
     tgagtcgccc tacccagcgc gccttggggg cgaggcggtg gctcgagcgg aggcgccgtt      4080
     tcggcttgga tggagcaaag aagtcaagca taccgttgga tgttggatat ttcaagcaga      4140
     ttgaaagtga cgtgctacca gataacaagc agttccacag tttggttggc gcgttgctgt      4200
     tcattgcttc caatacgcga ccggawatcg cagccgctgt ttcaattttg agtcggagga      4260
     ccagtgctcc aacgcagcgt gactggacag agctcaagcg agwtgttcgg tacttgatcg      4320
     gcacagagga ctacgagctg aagctaggcg ttcaacaaac cggtgatatg gtccttgccg      4380
     gctacagtga tgctgattgg gccggtgatc ggtccgacag aaaatcaacg agcagttttt      4440
     gtgtttttct tcggtggagc tcctgtagtg tgggccagca ggaaacaagg atgcgttaca      4500
     acatcaacaa cggaagctga atacttggct ctatcggatg cagcacaaga ggtgatatgg      4560
     ctacgtcgtt tgctgggtga gctgggcgag cagcaacggc ggccgactat aatcaacgaa      4620
     gacaatcgta gttgtataga cttcgtggcc ttagatcgtc tgaacaaacg aagcaaacat      4680
     atagacacca agtatcatca tgccaaggat ttatgcgcca agggagtaat acagctacgc      4740
     tactgttcga ccagtgagat gatcgccgac atctttacga agcctttggg gccgaataag      4800
     atcaaatatt tcacgaaggc tctaggactt gtcggactta actgatgccg gaaatgcagt      4860
     tcgtcagcga ggaggagtgt aggcggaatt tc                                    4892
//
ID   Copia-107_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-107_AA_;
KW   Ty1_copia_Ele166; Copia-107_AA-I; Copia-107_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 226 BP; 60 A; 45 C; 51 G; 70 T; 0 other;
     tgaagggcgc tgacgtcctg gtgacgtttc agaaacggaa gcaagactag ctgtcatttg        60
     tcaaacagcg gaagagaaaa tattgccaac ctttgtattt ccttctgtat tttagaataa       120
     aagttaatgc gtaataagcg agcacgattt cttcgcacgg gtcttttaaa atccgagttt       180
     cgtgagtttt tcgccactaa tcgcctgatg tttcgttcta tggcca                      226
//
ID   Copia-108_AA-I repbase;    DNA;    INV; 4086 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-108_AA_;
KW   Copia-108_AA-LTR; Ty1_copia_Ele43; Copia-108_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4086
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1493-2032] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..4086
FT                 /product="Copia-108_AA-I_1p"
FT                 /translation="MEKDSDAVRVPLFDGSNYPSWKFRMLVLLEEHEMTEC
FT                 IEEEVADVERLQVSAADNESVKATKLVALEARRKKDRKCKSILISRISDSQ
FT                 LEYVQDQPTPRQIWLALQRVFERRSIASRLHLKKKMLTLRHEGGDLQEHFL
FT                 KFDRLVREYKSTGAVIEDIDVVCHLLITLGPEFATVVTAIETMPEDKLTIE
FT                 FVKCRLLDEEIKCRGKEFDSFGVKREPSAFAGKPTGAVRKWKCFSCQKVGH
FT                 KAAECPERQKRKKEDNKKSSANVSEEKAGGICFAASGGVVREEKVLWIADS
FT                 GASEHMSNNKNLFEELVPLKDPVEIAVALNGKSAIAKCSGKIKMIAVSGSK
FT                 KRECTLENVLYAPDLRCNLFSIRKVEMAGMEIVFKDGSVKVRKDSEVVACG
FT                 RRRGLQYEMDFYAESTSASSLYSCGKLQKCNELWHRRYGHLSEKNLELIVK
FT                 KNMVTGFEKCAVDDNGEMFCEPCIEAKQTRKPFVSSSEKRASRVLELIHTD
FT                 VCGPVTPVGHDGSRYYVSFIDDWSRFTIVYTIQSKDQVLGCFKLYEAMVTA
FT                 KFGRKIARVRSDNGGEYRNEQFEKFCQQKGIQMECTVPYSPEQNGISERMN
FT                 RTLVEKARSMLIGSGVDKVFWCEAVETAAYLVNRSPASALKEGKTPFELWE
FT                 GRKPNISGMRVWGSPAFCHVPKENRKKLDSKAWKGIFLGYHCNGYRIWDPK
FT                 RKKVVVQRDVIIDESRGTSKEVPALGKTSTDNEMIRITHDEEVGDTDFGNT
FT                 EVPGDSHETSFEDCDEGSDSDSAADEDSAGAVEAPSDQIRTSGRRREPPAW
FT                 HRDYDMNCAYAMSATNFVENFPDTLKEMRKRDDWPYWKAAVEEEMNSHRKN
FT                 NTWSICKLPEGRKAVSSKWVFKLKRGENGAVDRYKARLVARGFSQRFGYDY
FT                 TETYSPVARMDTVRTVLAVANQERLKVHQMDVKTAFLNGNLEEEIFMTLPE
FT                 GSEGELNDVCRLNRSLYGLKQASRAWNERFHRFVTKLGFRQSENDRCLYVR
FT                 GEGSQRVFLLLYVDDILIVCRNLKEIEKVKKRLAQEFEMSDMGPVGNFLGM
FT                 SIDRNEEQRILRISQRCYLESLLCRFGMENCKPAATPMETRLQLKKGDEAN
FT                 KTSKPYRELVGCLAYVAQCSRPDLCASVNFFSQYQSCPTDEHWNFLKRVLR
FT                 YVRGTLDIVLEFHGSDKAEPFVVYSDSDWGNDVNDRRSITGCVFRVFGGTT
FT                 AWLTRKQQTVALSSTEAEFVALCTAACEGIWLRRLLEDLGVVIEGPVKHFE
FT                 DNQSCIKVTEEPRDSRRLKHVDVKFNFVRELVKDKRIDIRYIPSEKQLADI
FT                 MTKGLASTAFNRLREALGLQKLSRG"
XX
SQ   Sequence 4086 BP; 1156 A; 743 C; 1200 G; 987 T; 0 other;
     ataggttatg ggctacagtt tcgcgtgtgc cgggaagtag tagcgtgttt cggacgattt        60
     caagtgtttc gtgaagatgg agaaggattc ggatgcagtt cgcgttccgc ttttcgacgg       120
     gtcgaattat ccgtcatgga agttcaggat gctggtcttg ctcgaggagc atgagatgac       180
     cgagtgcatc gaagaagaag tggcggatgt ggaaaggttg caagttagtg cagcggataa       240
     cgaatctgtg aaagcaacga agttggttgc gttggaagcg cgaaggaaga aagatcgcaa       300
     gtgcaaatcc attctcatct cgcgaatcag tgatagccag ttggagtatg tacaagacca       360
     gccaacgccg aggcaaattt ggctggccct ccagcgtgtg tttgaaagaa gaagtattgc       420
     aagtcgtttg catttgaaga agaaaatgct caccctccgg catgagggcg gtgatttgca       480
     agagcatttc ttgaagtttg atcggttagt gcgcgaatac aaatcgaccg gtgcggtgat       540
     tgaggacatt gacgtggtgt gtcatttgtt gatcacgctc ggacctgaat ttgcgacggt       600
     ggtgaccgcg atagaaacaa tgccggaaga taaattgacg attgaattcg taaagtgtcg       660
     tttgctcgac gaggaaataa agtgccgtgg caaagaattt gattcgttcg gcgtgaagcg       720
     cgagccgtcg gctttcgccg ggaaaccgac tggtgctgtg agaaaatgga aatgtttttc       780
     gtgccaaaaa gtcggacaca aggctgcgga gtgtcccgaa cggcagaaga ggaagaaaga       840
     agacaataag aagtcaagtg caaatgtttc cgaagagaaa gcgggtggaa tatgtttcgc       900
     cgctagtggt ggtgttgttc gggaagagaa agtattgtgg attgcagatt cgggtgcttc       960
     cgaacacatg agcaacaaca agaatctctt cgaagagcta gtgccattga aggatccagt      1020
     tgaaatcgct gttgcattga acggtaagtc tgcgatagca aagtgttctg gcaagattaa      1080
     gatgattgcc gtcagtggaa gcaagaaacg tgagtgtact ttggaaaatg ttctctatgc      1140
     tccggatctc cgttgtaatt tgttctcgat ccgcaaagtg gaaatggcgg gaatggagat      1200
     tgtgttcaaa gacggtagtg taaaagttcg gaaagattct gaagtggtcg cctgtggacg      1260
     acgtcgtgga ttgcaatacg aaatggactt ttacgcggaa agtacaagtg cgtcgtcatt      1320
     gtattcgtgc gggaagttgc aaaaatgcaa tgaactttgg catcgtcggt atggtcactt      1380
     gagcgagaag aacttggaac tgatcgtgaa gaagaatatg gtgaccggat tcgagaagtg      1440
     cgcggtagac gacaatggtg aaatgttttg cgaaccatgt atcgaagcga aacaaactcg      1500
     gaaaccattc gttagtagct ccgagaagag agcttcgcgt gtgctagaac taatccatac      1560
     ggacgtctgt ggccctgtaa cgccggtggg gcatgacggt agtcggtact acgtcagttt      1620
     cattgacgat tggagccggt ttaccatcgt ctacacgatc caatcgaagg atcaggtgct      1680
     cggatgtttt aaactttacg aagcgatggt cactgcaaaa tttggaagaa aaattgcgcg      1740
     tgttcgtagt gataacggtg gagaataccg aaacgaacag ttcgagaaat tttgccagca      1800
     gaaaggaatc cagatggagt gcacggtgcc gtattcgccg gagcagaacg gcatcagtga      1860
     gcggatgaac cggaccctgg tggagaaggc caggtcaatg ctcatcggtt ccggtgtcga      1920
     caaggtattt tggtgtgagg ccgtagaaac ggccgcttat ctggtaaata ggagccctgc      1980
     aagtgccctg aaagaaggta agacaccatt tgaattatgg gaaggtcgaa aaccaaatat      2040
     ttccggaatg cgagtgtggg gaagtccagc cttttgccat gtccctaagg aaaaccggaa      2100
     gaaactcgat agtaaggcat ggaaagggat atttctggga taccactgta acggatacag      2160
     gatctgggat ccgaagcgaa agaaagtggt agtgcaacga gatgtaatta tcgacgaatc      2220
     tcgtggtaca tcgaaggaag ttccagcgct tggcaagaca tctacagata atgagatgat      2280
     tcggatcacg cacgacgagg aggtaggaga caccgacttt ggtaatacgg aggtaccggg      2340
     tgattcgcat gaaacaagct tcgaagattg tgatgaagga tcggattcgg actcggcagc      2400
     tgatgaggat tcagcagggg cagttgaagc accatcagat caaataagaa ctagtggtcg      2460
     tagaagagaa cctcctgcgt ggcacagaga ttacgacatg aactgtgctt atgcaatgag      2520
     tgcaacgaac tttgttgaaa atttccctga tactctgaag gaaatgagga agcgtgacga      2580
     ttggccgtat tggaaagccg ccgtcgagga ggagatgaac tctcatcgga agaataatac      2640
     gtggagcatt tgcaagttac ctgaagggag gaaagcagtc tcgagtaaat gggttttcaa      2700
     gcttaaacgt ggtgagaacg gagctgtgga ccgatataag gctcgactgg tggcccgtgg      2760
     attttcgcag cgtttcggat atgattacac tgagacatac tcaccggtag caagaatgga      2820
     tacggtgcgt acagttttgg ctgtggcaaa tcaagaacgt cttaaagtac atcaaatgga      2880
     cgtcaagacg gcgttcttga acggaaactt ggaagaggaa atttttatga cgttacccga      2940
     aggctcggaa ggagaactaa acgatgtttg ccgtttgaac cgttcgctgt atggtttaaa      3000
     acaggcgtca agagcctgga acgaaagatt tcatcgtttt gtgaccaagt taggatttcg      3060
     gcaaagtgag aatgatcggt gcctgtatgt acgaggtgag ggtagccaac gagtgttcct      3120
     gttactgtat gttgacgaca tacttattgt ttgccgaaac ttgaaagaaa tcgagaaggt      3180
     aaagaagcga ctggcgcagg agtttgagat gtcggacatg ggtcctgttg gtaattttct      3240
     tggaatgagt atcgacagga atgaggagca gcgaattttg cggatttcac agcgttgtta      3300
     tctcgaaagt ctactttgcc gatttgggat ggagaactgt aagccagcag cgacaccaat      3360
     ggagactcga ttgcagctga agaagggtga tgaagcaaac aaaaccagca agccatacag      3420
     ggagctcgtg ggctgtttgg cgtacgtagc gcagtgttca aggccggatt tatgtgcatc      3480
     agtgaacttt ttcagccaat accagagctg cccaacagat gaacattgga atttcttgaa      3540
     gcgtgttctg cgatacgtac gaggaacttt ggacatagtt ttggagtttc atggaagcga      3600
     taaagctgaa ccgtttgtcg tttattcaga ttcggactgg ggcaacgatg ttaacgatag      3660
     acgatcgatt actggatgtg tttttcgtgt ttttggtggc acaacagcct ggttaacaag      3720
     aaaacaacag accgtagcac tgtcctcaac agaagcagaa tttgtggctt tgtgtaccgc      3780
     cgcatgtgaa ggtatttggc tccgtcggct tcttgaagat cttggcgtgg taattgaagg      3840
     tccagtgaaa catttcgagg ataaccaatc gtgtattaag gtgacggagg agccacgtga      3900
     cagtcgacga ctaaagcacg tggatgtcaa attcaacttt gttcgcgagc tagtgaaaga      3960
     caagcgcatc gatatccgct acattccatc ggagaaacag ttggcggata ttatgactaa      4020
     aggactggca tcaacggcct ttaatcgttt acgagaagct ttaggactgc agaaattgag      4080
     cagggg                                                                 4086
//
ID   Copia-108_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-108_AA_;
KW   Ty1_copia_Ele43; Copia-108_AA-I; Copia-108_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-235
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 235 BP; 62 A; 59 C; 43 G; 71 T; 0 other;
     tgttgagtaa caatttcagt accgggtaca tcagcacaac cctacctgtg tgacagccct        60
     gaagcggtaa agccatgacg tggcataaca gagaacaaaa gcgcgcgaca gcctttcgcg       120
     ctaaaactat tcttttttca ttctgtgtac aaccttcgtt gaataaacat cttttcattt       180
     tcgttctgta atcgcgttct gtttaattac tgaccggccg aattccctat tctca            235
//
ID   Copia-109_AA-I repbase;    DNA;    INV; 4189 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-109_AA_;
KW   Copia-109_AA-LTR; Ty1_copia_Ele76; Copia-109_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4189
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1622-2125] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(986..2524,2528..4189)
FT                 /product="Copia-109_AA-I_1p"
FT                 /translation="MLAGEKKKESRKVSFAVDSGASSHMVNDEKLLQRAVK
FT                 LATPVTISTAKSGETLQAVKKGKVTLKSVVGLNKIKRIELYDVLFIPDLEE
FT                 NLLSVRKINSMGKRVTFQDKEVRIEDKGEVIAEGKNKNGLYCVDMFLEHTV
FT                 DQAALFSQRKVSLTDWHKRLGHLSFSGLEKLLKNNMVDGIDISSNDLVKQY
FT                 EVCESCLAGKQSCKKFLSMQLPRSSRPLELVHTDVCGYMEQSTYDGYRYFV
FT                 TFTDDFTHFTVVYLIKRKSDVFDRFKEYEAMATAHFGQKLSKMRCDNGREY
FT                 LGKDFQDYCRNKGIRMIFTVPYTPQQNGVSERINRTLMEKVRALLHQSELS
FT                 KEMWGEALYVAAYVTNRSPTNALVELKTPFEMWNGRKPDLSNLKMFGSHAY
FT                 KQIPKEKRHKLDSKTKRLTFVGYANNGYRLWNKNNRVIEISRNVVFDESIV
FT                 RSNTTTEDVHLPIVVREQKHCENEDKEEEISICNEDESITNKDDEEEVIRL
FT                 PEPEEEVEAEEVVIIETDEVFADAEEDEGIDEQQSELRRGTRKRKVPQRFQ
FT                 PSSAKIASATFDEDAPETVAELKKREDWENWKIAIDEELNSLHENKTWTVV
FT                 NCLPRNQKAIHSKWVFSVKDDGRYKARLVAKGCSQRPGFDYQDTFAPVARM
FT                 ESVRTILSVANKNGLFIHQMDVKTAFLYGDLEETIFMKLPNDEIGNSQIVR
FT                 LQKSLYGLKQASRSWNRKFDDEIKKLGFIPLKSDCCVYTSRAKDLILILYV
FT                 DDILILGKQESQLNWIKSELGKLFQMKDLKEVKHFLGMDIHRDYQNQIMEI
FT                 SQAGYAEKILKRFGMSESKPVSTPLDPNVRWVKSNDDELTSHPFKELLGCL
FT                 QYLALVSRPDISAAVNILSKYQASPSNAHWTGLKRILRYLRGTMNTKIVFS
FT                 NREHSNVLLGFADADFANDIDDRKSISGNSFLVFGNLVSWSTKRQQTVSLS
FT                 STEAELISLCQAAKEGLWLTNLLNELGIESSPFIIMEDNIPCINFTEEPRS
FT                 HQRMKHLDLKFMFIRELVRSRKLKIEYISTVDQPADAFTKGLPAAQHRKLL
FT                 NILNVRIEGK"
XX
SQ   Sequence 4189 BP; 1364 A; 751 C; 1011 G; 1056 T; 7 other;
     ggttatgggc ccagtagtca actgagcaag atttattttt cttcaacgat caagtttttt        60
     tgaagaaatc gaaagatgtc tgtgaacgat gtcgaagtca aggcaggtgg tcaacctgca       120
     aaccagcgac aggaggttga gaatcggacc gagagaggag ctttcgaacg gcagctgccg       180
     tataccgccg ttgctgtacg agaccgtgcc catatcttcg atgggtcgga gaggatgttt       240
     gcggcatgga agtggaggat ggagcaccac ctctctatga tggacctcat ccatacgttg       300
     gttcgtactc cgtacgaaga agaatacgcc actcccgtgg cgggtaattc ggaagcccaa       360
     gaggaagtga gaaaggcaaa gctgcgtaag agaatcaacg acgacatgaa cgctctggat       420
     gaaattgtta tgtgggtgaa caatgacgtc cttaacaagc taatcggagt ctcatacgca       480
     aaggaggcta tggatctatt ggtgaaaacc taccaaaaag ttggaacggg cgttatgatt       540
     gccatgcgtg atcgattgtt ttcgatcaaa aatagaaaac atacttctat ttcggccttg       600
     ttcgacgagt acgasccgat aatscgggag ctagatcgga tgggtactcg aatkgatcaa       660
     tcggagaaga tggccgctct gwtgatagcc ataccggagc gatatcagca cgtcaaggga       720
     gcattgacsg ttttgccgwg cgatgaactc tgcaagaagc cgttagtgga gataaagcgg       780
     atgctgttgg atgcggagca aagcgagacg atggaggtcg atgatgagcc agtggtgcca       840
     gacgtggcgc taaaaacgac cagaagagta attgagtgtt ttgggtgtgg aaagccggga       900
     cactacaaaa ataaatgccc tctaatgaag gcgttcgtgg caaagaagaa gaagaagcgg       960
     tttgttcata cgccaaggtc atgcgatgct agcaggagaa aagaagaagg aatctcggaa      1020
     ggtatcgttt gctgtggact ctggagcttc aagccacatg gtgaacgacg aaaaattgtt      1080
     acagagagcg gtgaagctgg caacaccggt taccatcagc acagcaaagt cgggggagac      1140
     cctacaggct gtgaagaaag gaaaggtaac attgaaatcg gttgttggct tgaacaaaat      1200
     aaaacgtatt gaattgtacg atgttctttt cattcccgat ctcgaagaaa acctcctttc      1260
     agtcagaaag attaattcca tggggaaaag ggtcactttt caggataaag aggttcgaat      1320
     tgaagataaa ggcgaggtta tcgctgaggg gaagaataaa aatggtttgt attgcgttga      1380
     tatgtttttg gagcatactg tcgaccaagc agcgttgttt agtcaaagga aggtaagtct      1440
     aaccgattgg cataaacggc tcggtcatct tagtttttcg gggcttgaaa aactgctcaa      1500
     aaacaatatg gttgatggaa tagatatttc atcaaatgat ttagtcaaac agtatgaagt      1560
     ttgcgagagt tgtttagcag gcaaacaatc atgcaagaag tttctttcta tgcaattacc      1620
     cagatcaagt cggccacttg aattagtgca tacagatgta tgcgggtata tggagcaatc      1680
     cacctacgat gggtatcggt atttcgtcac ctttaccgat gattttaccc atttcactgt      1740
     tgtttatctc attaaaagaa aaagtgacgt attcgatcgt tttaaagaat acgaagcaat      1800
     ggcaacagct cactttggtc aaaagttgtc taaaatgcgt tgcgataacg gtagagaata      1860
     tcttggcaaa gatttccaag actactgtag gaataaaggt atcagaatga tttttaccgt      1920
     tccttatact cctcagcaga acggagtaag tgaaaggatt aatcgaacgc taatggagaa      1980
     ggttcgagct ttactccatc aaagtgaact ttcgaaagaa atgtggggag aagcattgta      2040
     tgtggctgct tacgtcacta acaggtctcc gacaaatgct cttgttgaac tcaagacgcc      2100
     ttttgaaatg tggaatggca ggaaaccaga ccttagtaat ctaaagatgt ttggtagcca      2160
     tgcttacaag caaattccga aagagaaacg tcacaagctt gattcgaaga caaaacgatt      2220
     gacattcgta ggttatgcga ataacggata tcggttgtgg aataaaaaca accgagtaat      2280
     tgaaatatcc agaaacgttg tctttgatga atcaattgtt cgcagtaata caacaaccga      2340
     agatgttcat ctaccaattg ttgtgaggga gcagaaacac tgcgaaaatg aagataagga      2400
     ggaagaaatt tcaatctgca acgaagatga gagcataaca aacaaagatg atgaagaaga      2460
     ggtgattcga cttcctgagc ctgaggaaga agtggaagca gaagaagttg taataatcga      2520
     gacgtmtgat gaggttttcg cggatgctga ggaggatgag ggcatcgatg agcagcaatc      2580
     agagctaaga cgtggtacac ggaaaagaaa agttccccaa agattccaac cgagttctgc      2640
     caagatagct tctgcaacat tcgatgaaga tgctccagaa acagtagccg aattgaagaa      2700
     acgggaggac tgggagaatt ggaaaattgc catcgatgaa gaattaaatt ctcttcatga      2760
     aaataaaacc tggacagtgg tcaactgttt accgaggaac caaaaagcta ttcattcgaa      2820
     atgggttttt tcggtgaaag acgatggccg ctataaagca cggctagttg caaaaggttg      2880
     ctcacagaga cctggttttg attaccagga tacttttgct ccagtagcca gaatggaaag      2940
     cgttaggaca attttgtcag tcgcaaataa gaatggactt tttattcatc aaatggatgt      3000
     taagacagct tttctttatg gagatttaga ggaaacgatc ttcatgaagc ttccaaacga      3060
     tgagataggt aattctcaaa tcgtacgtct acagaaaagt ttgtacggtt taaaacaagc      3120
     tagtagatct tggaacagga aattcgatga cgaaattaaa aagctgggtt ttattccatt      3180
     aaagagtgac tgttgtgtgt atacgtctcg agcaaaagat ttgattttga ttttatatgt      3240
     agacgatata ctcattcttg gaaaacagga atcacaacta aactggataa aatctgaact      3300
     tgggaagcta ttccaaatga aagatttaaa agaagtgaaa cactttttgg gtatggacat      3360
     acaccgagat tatcagaacc aaatcatgga aatatctcaa gcaggttatg cagagaaaat      3420
     cctaaaaaga tttggaatgt ccgaatcaaa accagttagc actccactag atccgaatgt      3480
     acgatgggtc aagtcaaatg atgatgaatt aacatcacat ccattcaaag aattgcttgg      3540
     ctgcttgcaa tatctagcat tagtatcacg ccctgatatc agtgctgcag taaatatcct      3600
     aagcaaatac caagcttccc cttcaaatgc acattggaca ggattgaaac gcattttgcg      3660
     ttatttgcga ggaaccatga acacaaaaat cgtattcagc aatagagaac actcaaacgt      3720
     tttattgggt tttgctgatg ccgattttgc caacgacatc gatgatcgaa aatcaatttc      3780
     tggaaattcg tttcttgttt tcggcaatct tgtgtcttgg tcaaccaaaa gacaacaaac      3840
     ggttagtttg tcgtcaacag aagctgaatt aatttcactc tgtcaagctg ctaaagaagg      3900
     attgtggtta acaaaccttc tgaatgaact gggcatagaa agttctccat tcataatcat      3960
     ggaagacaac attccatgca taaacttcac tgaagaacct cgaagtcacc aacgaatgaa      4020
     acaccttgat ttgaagttca tgttcatccg ggaactcgtc aggagcagga agctaaagat      4080
     agaatatatc tcgacggtgg atcaaccagc tgatgcattc accaaaggac ttccagctgc      4140
     tcaacatagg aaactgctga acatccttaa tgtccggatt gaggggaaa                  4189
//
ID   Copia-109_AA-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-109_AA_;
KW   Ty1_copia_Ele76; Copia-109_AA-I; Copia-109_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-376
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 376 BP; 131 A; 64 C; 70 G; 111 T; 0 other;
     tgttgaaata tcgcggaact attcgcgagg agatcgcgat gatcagattc gatcaaaata        60
     ataacaatcc agcattgaag gattgatgac gtatgtcatg ttattccaat aatgcccaaa       120
     cgagatccaa cgggaacttg catacgaggt tgtatgcggg cgctataaat gttctgctgc       180
     agataggttc ataaatattc tcacttgaat tcagtgttgc gagtaatgct attggattat       240
     catgtgaatc atattgaatt ataaacattg gattatttac atcgctatcg aacattgact       300
     accaataatg acctaacaga cgaaataaag aatttttatc tacaaaccaa accaaaactg       360
     agtttaagtt ttaaca                                                       376
//
ID   Copia-10_AA-I repbase;    DNA;    INV; 2599 BP.
XX
AC   supercont1.241;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_AA_;
KW   Copia-10_AA-LTR; Copia-10_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2599
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.241; Positions 1460717 1463315.
XX
CC   Positions [1506-2033] - Integrase core
CC   'TATTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           147..2597
FT                 /product="Copia-10_AA-I_1p"
FT                 /translation="MAEQNKFAFARLSNHNWQIWKFRMEMLLTREELWYVV
FT                 GDVKPEPVTDQWTKDDRKARATIGLCIEDNQFGLVKNADSAKAFWDELKAY
FT                 HEKNTVTSRVSLLKKLCSVNLAEDGDLECHLVVLEDLFDRLSNAGQPLEES
FT                 LRIAMILRSLPDSYGTLVTALESRADADITMQLVKSKLLDEFERRKERSGD
FT                 SFDMKAMKSAMQSVGGVSERVCYFCKKPGHVRRNCRLYLAKQKSGEDEKKP
FT                 EGKSIAKKVKNETCSAGVCFMVADDGQRECWFIDSGASCHMTSDKKFFTTF
FT                 EDKAGPNVILADGKVAATAGCGEGVVLCVGGDGNTIEVKLRDVLYVPSLTS
FT                 GLVSVDKLTAKGFVVKFRKDGCSICDVSGKVVVAGEQTGSLYKLKLAEVAR
FT                 KVEGKMHNHNCQHQWHKRFGHRDPAVLSKIVDGKLGVGVKVTDCGIRQTCE
FT                 PCLEGKLSRNPIPKVAERKSKRVLELVHTDLCGPMRTTTPGGKRFLMTMID
FT                 DFSRYTVLYLLEKKSEAAGKIKQYVRYVENLFGQKPQVIRSDGGGEYANEE
FT                 LRRFFAEEGIKAQYTTAYTPQQNGVAERKNISLQEMATTMLLDAGLDKRYW
FT                 GEACVSAAYLQNRLPSRSVDTTPYEKWCGRKPELGHLKAYGCPAYVHVPGV
FT                 KRGKFESKARKLTFIGYSEEHKGYRFVDTGTDMVTISRDAKFLEMQDPKCS
FT                 SREKVNEGSEVEWFSGAQPTEVDNFDGSELDKSEEEDYFDLDNTAGEQDPL
FT                 QVKEEIQDSSADENPEDMRRSRRSNRGVPPSHLSEYVVGIARADGRSARSQ
FT                 EEIFRGMQRGSALRR"
XX
SQ   Sequence 2599 BP; 724 A; 479 C; 802 G; 594 T; 0 other;
     ggtaatggtc ccagaggaaa tccgaaatat tatttccgga tagtttagga agaaagtgtg        60
     agaaactgtt ttcctgtttc gggtgttcgc gccgcgtgtg attgaatttt tgtttcctgc       120
     tgtggtgatt cagttcggaa aacaaaatgg cggagcagaa caaattcgcg tttgccaggt       180
     tgagcaacca caactggcag atctggaagt tccggatgga gatgcttctg accagggagg       240
     agctctggta tgtggtgggc gatgtgaagc cggagccggt taccgatcag tggacgaaag       300
     acgaccggaa agctcgtgcc accatcggtt tatgtatcga ggacaatcag ttcggtttag       360
     tgaaaaacgc ggacagtgcg aaagctttct gggatgagtt gaaagcatac cacgaaaaga       420
     acacggttac gtcgcgtgtg tctttattga aaaagctttg cagtgtgaac ctcgcagaag       480
     atggtgatct cgagtgccat ttggtagttt tggaagattt attcgaccgt ttgtcgaatg       540
     cggggcaacc gctggaagag tcgctgcgga tcgcgatgat cctgcgcagc ttgcccgact       600
     cctacggaac attggtgacg gccctagaga gtcgtgccga tgccgatatc accatgcaac       660
     tggtaaaatc gaagctactg gatgaattcg agaggcggaa ggaacgatcc ggtgattcgt       720
     ttgatatgaa agcgatgaaa agtgcaatgc aaagtgtggg cggtgtttca gaacgagtat       780
     gctatttctg taaaaagcct ggccatgtgc gtcggaattg ccggctttat ctggcgaagc       840
     agaaaagcgg tgaagacgag aagaagccag aaggaaaatc gattgcgaag aaagtgaaaa       900
     acgaaacctg cagtgccggt gtgtgcttca tggtggcgga tgatggacag cgtgaatgtt       960
     ggttcatcga cagtggagcg agctgccaca tgacaagtga caaaaagttt ttcacgacgt      1020
     tcgaagacaa ggctggtcca aatgtgattt tggccgacgg caaagttgct gccacagctg      1080
     gatgcggtga aggtgtagtg ttgtgtgtag gtggagatgg aaatacaatt gaagtaaagt      1140
     tgcgcgatgt gttgtatgtt ccctccctca ccagtggact tgtgtctgtg gacaagttaa      1200
     ccgcgaaagg atttgtggtg aaattccgaa aggatggctg ttccatttgc gacgtcagcg      1260
     gtaaggtggt tgttgccgga gagcagactg gatccctgta caagctgaag ctggcggaag      1320
     tcgcaaggaa agtggaaggt aagatgcaca atcataattg tcaacatcag tggcataagc      1380
     gtttcggaca cagagacccg gcagtattgt cgaagattgt cgatggcaaa ttgggcgtag      1440
     gcgtgaaggt cacggattgc ggcatcaggc aaacttgcga gccatgtttg gagggtaagt      1500
     tgtcacggaa tccgattccg aaagtagcgg aaagaaaatc aaagcgtgtt ttggagttgg      1560
     tccacacaga tctctgtggt ccaatgcgaa cgacgacacc tggtggaaaa cgatttctta      1620
     tgacgatgat cgacgatttc agtcgataca cggtccttta tctactggag aagaaatcgg      1680
     aggctgctgg taagataaag caatatgtga ggtacgtgga gaacttgttt gggcagaaac      1740
     cacaagtgat cagatctgac ggcggtggtg aatacgccaa cgaagagttg cgacgattct      1800
     ttgctgaaga aggtattaag gcacagtata cgactgcgta tacgcctcag caaaacggag      1860
     tggccgaaag gaagaacata tcgctacagg agatggctac aacgatgctg ttggatgctg      1920
     gtttggacaa gcgttactgg ggagaagctt gcgtttctgc tgcatacttg cagaacaggc      1980
     ttccgtcccg gtcagtagat acgacaccgt atgagaaatg gtgtggtcgc aagcctgagc      2040
     tggggcatct gaaggcatac ggatgtccgg catatgtgca tgttccagga gtgaaacgtg      2100
     gcaagttcga gagcaaagcg agaaagttga cgttcatcgg ttattcggag gagcataaag      2160
     gctaccggtt cgtagatacc ggaacggata tggtgacgat aagccgagat gcgaaattct      2220
     tggaaatgca ggatccgaag tgttcatcac gggagaaagt gaatgaaggt agtgaagttg      2280
     agtggttctc gggggcacaa cctaccgaag tggacaattt cgatggatcc gagttggaca      2340
     aaagtgaaga agaagactat tttgatttgg acaatacggc aggagaacaa gatccgttgc      2400
     aagtgaaaga agaaattcaa gattctagtg cggacgaaaa tcctgaagac atgcgtcgat      2460
     ccaggaggag taatcgaggt gtcccgccta gtcatctgtc ggaatacgtt gtaggcatag      2520
     caagagctga cggcaggagc gcaagaagtc aggaggagat attccgagga atgcagcgag      2580
     gatcagcatt gaggaggag                                                   2599
//
ID   Copia-10_AA-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   supercont1.241;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_AA_;
KW   Copia-10_AA-I; Copia-10_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.241; Positions 1460412 1460716.
XX
SQ   Sequence 305 BP; 72 A; 75 C; 66 G; 92 T; 0 other;
     tgatggaata tgcaatgctg tttcctctcc gtgcagtatt cggtgagtgg taaccaaggt        60
     ggcaaccctg aatgctatcc actgcaccgt cgagcgagcg cgccaaaagc gcatcattga       120
     gaaggagaag gcaaagcaac agtgcaaagt acagttgatt ttttcattca ttcgttacta       180
     ttcaacccga acagaagtgt attaaagttt atctcgtttc attcacacaa gtgtttcatt       240
     ccttgtccgg tttccttttc ttcggtgttt cgcttccgtt gtgccgtgtc cacctctgcc       300
     caaca                                                                   305
//
ID   Copia-10_CQ-I repbase;    DNA;    INV; 4039 BP.
XX
AC   AAWU01001056;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_CQ_;
KW   Copia-10_CQ-LTR; Copia-10_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4039
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 335-335 (2011).
XX
DR   GenBank; AAWU01001056; Positions   14172   18210.
XX
CC   Positions [1522-2052] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..1639
FT                 /product="Copia-10_CQ-I_2p"
FT                 /translation="MADEEVRVPGAGRGVAAVQPGGPRLPGSSVSLPVKEV
FT                 LRGSENYNSWAFATKMVLIKERTWRAVRDPVEGEPEVDADTSEQALATICL
FT                 SMDRGLRGMVQNAATAREAWDILRNTFEDSGSTRRIGLLRKLTGIRLMGAE
FT                 KVEEIICQSTQEYVSEIMVTCNQLAEVGFKVDDDWVSSLLLKGLPKKYAPM
FT                 ILGLESSGVKLTAEKVKATIMQEVKVEAGSSSSESEGAFYSKQRQQKFKKP
FT                 VEKSDVKCFRCKKLGHYASECTNGTSAKSKEKSGNHKGNATSFFAAFNAVE
FT                 SPAGASGDWIIDSGATTHMCRNEAILEKPSSVSAMINVANNAEVAVVAKGS
FT                 VKLEAECDGEIRDLTMTDVMCVPDLAINLLSVSKVCQKGFRVEFTKDACAV
FT                 LDASDTVVAIGRETDGLYKLTETKRSRANLVQADDQFELWHRRMGHLSASG
FT                 MKRLREMTTGAQFDVKDGCSVYRASRASTSVNRSTREGRERSESWNWFTRI
FT                 CAARWRRSRSEADATF"
FT   CDS           1603..4029
FT                 /product="Copia-10_CQ-I_1p"
FT                 /translation="METESIGGRRYFLTFIDDASRKTVVCFLKSKTEVLEA
FT                 FQNFKAFAENQTGERIKRIRTDNGREYVNREMEEFLRKSGIHHEKTVPYNP
FT                 EQNGLAERRNRTYVERARSMLFDAGLDKRFWAEAVATASHVINRSPAKGLS
FT                 VTPEEKFTGKRPDLSHLRVFGTKCMAHVPKERRRKWDKKSTGTDVALTEPE
FT                 VGDEEMELIVPSIPIEVGPAAEEEAEPEEDESDFSDYESVEGDADSLVEAE
FT                 EEPLVLPPQPEDPQVLVRRSGREHVPPGKYKDYVCSTLPEKDSQPRQNRSI
FT                 PMMVEPDTYREAIARDDSDQWKRAMAAEFGALVENRTWELTDLPKGRKALR
FT                 CKWVYKLKTNSDGSVERYKARLVIKGYSQIKGVDYSETFSPVVRYATVRYL
FT                 MSLAAKLDLKVHQMDAVTAFLQGDLGEEEIYMEQPEGFTESGAPTKVCKLR
FT                 KALYGLKQASRVWNQKLDAELKRSAYDTCVYFKLEGNTVLIVAVYVDDLLV
FT                 FSNNQQWVTKLKKDLMARFRMKDLGMASKVLGMRVTRGDDKVMLDQEQYIN
FT                 ELLQRFNVAKCNAVSTPVDPTQKLTKEMCPSSVEEREQMAKVPFRELVGGL
FT                 QYLALSTRPDICYAVNAVSQFSSNPGKAHWIAAKRVLRYLKGTKMMKLTYS
FT                 KHRDQSFVGYSDADWGNDPETRRSITGYVYMEAGGSISWSCRKQTTVALST
FT                 MEAEYMAVSAATQEALWWRGLLKELFGVAQPVTIYCDNMSAVHLAEKEIGY
FT                 SPRSKHIDIRHHFVRENVEEKLIKLEHVATEAQKADVFTKPVAVSKFLEAR
FT                 KALGIHG"
XX
SQ   Sequence 4039 BP; 997 A; 963 C; 1326 G; 753 T; 0 other;
     gacagtccgt agcaacggct gtttggagaa aataacagtt tggaagaaaa ttttcactca        60
     agaagttaac tgaagaattt ggaagaagtt ttgtcctgaa acgatggccg atgaagaagt       120
     ccgagttcct ggcgctggac gaggcgtggc ggcggttcaa cctggcggtc caaggctacc       180
     tggaagttcc gtttcgctgc cagtgaagga ggtgctgcgt ggttcggaga actacaactc       240
     ctgggcgttt gccacgaaga tggtcctgat caaggaacgg acctggcgcg ccgtacggga       300
     tcctgtagaa ggagaaccgg aagtggacgc ggatacctcg gagcaagcac tggcgactat       360
     ctgcctcagc atggaccggg gcctacgtgg catggtccag aatgcggcaa cggcaaggga       420
     agcttgggac atcttgcgca acacgttcga ggacagcggt tccacccgga ggattggtct       480
     cctgagaaaa ctgaccggga ttcggttgat gggagctgag aaggtggaag agatcatctg       540
     ccagtcgacc caggagtacg tcagcgagat catggtgacc tgcaaccagc tggcggaagt       600
     cggcttcaag gtcgacgatg attgggtgtc gagtttgctg ctgaagggcc tgcccaagaa       660
     gtacgcgccg atgattctcg gactggagtc gtccggggtc aagctaacgg cggagaaggt       720
     gaaggccacg atcatgcagg aggtgaaggt cgaggctgga tcgagctcga gcgagagcga       780
     gggcgctttc tacagcaagc agcggcagca aaagttcaag aagcccgtcg agaagtctga       840
     cgtcaagtgt ttccgttgca agaagttggg acactacgcg tcggagtgca cgaacgggac       900
     gagcgcgaag agcaaggaga agtctggtaa ccacaagggg aatgcgactt cgttctttgc       960
     tgcgttcaac gcggtggagt caccggcagg agccagtggt gactggatca tcgattccgg      1020
     agcgacaacc cacatgtgcc ggaacgaagc gatcctggag aaaccatcga gtgtgtcggc      1080
     catgatcaat gtggccaaca acgcggaggt cgccgtcgtc gcaaagggtt ccgtcaagct      1140
     ggaagctgaa tgtgatggag aaatccggga cttgacgatg accgacgtga tgtgcgttcc      1200
     ggacctggcg attaacctgc tttctgtaag taaagtgtgc cagaaaggtt ttcgtgtgga      1260
     gttcacaaag gacgcgtgtg cggtgctgga cgcaagtgac acggtggtag cgattggtcg      1320
     agagacggac ggtctctaca agctcaccga aaccaagcga tctcgtgcga atctggtgca      1380
     agcagacgac cagttcgagc tgtggcatcg ccggatggga catctttctg ctagcggaat      1440
     gaagcgatta cgagagatga cgaccggcgc ccagttcgac gtgaaggacg gctgcagtgt      1500
     gtaccgtgca tcgagggcaa gcaccagcgt caaccgttca acgcgcgagg gcagagagcg      1560
     gagcgagtcc tggaactggt tcactcggat ctgtgcggcc cgatggagac ggagtcgatc      1620
     ggaggcagac gctactttct gaccttcatt gacgatgcca gccgcaagac cgtcgtgtgc      1680
     tttctgaagt cgaagactga ggtgctggaa gcatttcaaa acttcaaagc gtttgcggag      1740
     aaccagacag gtgagcggat caagcggatt cgtaccgaca acggtcgtga gtacgtgaac      1800
     cgcgagatgg aagagttcct gcgcaagtct ggtatccacc acgagaagac cgttccgtac      1860
     aatccggaac agaacggtct ggctgaaaga cgcaaccgta cgtacgtcga gagagcgaga      1920
     agcatgctgt tcgacgctgg cctggacaag agattttggg cggaagcagt ggcaactgcg      1980
     tcgcacgtga tcaaccgatc accggcgaag ggactgtcgg tgacaccgga ggagaagttc      2040
     acgggcaagc gaccggatct gtcgcatctc cgcgtgttcg gaaccaagtg tatggcgcac      2100
     gtaccgaagg agcgacgacg aaagtgggac aagaagtcga ccgggactga cgttgctttg      2160
     acggagcctg aggtcggaga tgaagaaatg gagctgatcg tgccaagtat tccgatcgag      2220
     gtcggtccag ctgctgaaga ggaagctgag cccgaagaag acgagtcgga cttcagcgat      2280
     tacgagtcgg tcgaaggcga tgccgattcg ctggttgagg cggaggaaga accgttggtg      2340
     ctccctccac aaccagagga cccacaagtg ttggtaaggc gcagtggtag ggagcacgtg      2400
     cccccaggca agtataaaga ttatgtgtgc agtaccctac ctgaaaaaga ttcccaaccc      2460
     agacagaacc gttccatccc gatgatggtc gagcctgaca cgtaccgtga ggcgattgct      2520
     cgagacgaca gcgaccagtg gaaacgtgcg atggctgcgg agttcggagc gctggtggag      2580
     aatcggacgt gggaactaac cgatctgccg aaggggagga aagctctacg ctgcaaatgg      2640
     gtctacaaac tcaagacgaa ctcggatgga tctgtcgagc gctacaaagc ccgcttggtg      2700
     atcaagggct attcgcagat caagggcgtc gactacagtg agacgttttc acctgtagtc      2760
     cggtacgcta ccgtccgata cctgatgtcg ttggctgcca agttggatct aaaggtgcac      2820
     cagatggatg cagtgacggc gttcctgcag ggtgatctgg gagaagagga gatctacatg      2880
     gagcagccgg aaggcttcac ggaatcaggt gcccccacga aagtctgtaa gctgcggaag      2940
     gcgctgtacg gtctgaaaca agccagccgg gtatggaacc agaagctgga tgccgagctg      3000
     aagcgttcgg cgtacgacac gtgcgtctac ttcaagctgg agggcaacac ggtccttatc      3060
     gttgctgttt acgtggacga tttgttggtg ttctcgaaca accagcagtg ggtgaccaag      3120
     ctgaagaagg acctgatggc gcgattccgg atgaaagact tgggcatggc gagcaaagtt      3180
     cttggcatgc gagtgaccag aggcgacgac aaggtgatgt tggaccagga gcagtacatc      3240
     aacgagttgc tgcagcgatt caacgtggcc aagtgtaatg ccgtctcgac gcctgttgat      3300
     ccgactcaga agctgaccaa ggagatgtgc ccgagctctg tcgaggaacg ggagcagatg      3360
     gcaaaagttc cgttccgtga actggtaggc ggactgcagt atttggcgtt atcaacccgg      3420
     ccagatatct gctacgcggt gaacgcggtc agccagttca gcagcaaccc agggaaggca      3480
     cactggattg cggccaagcg agtgctgcgg tacctgaagg ggaccaagat gatgaagctg      3540
     acctactcga agcacagaga ccagagcttc gtcggataca gcgatgcgga ctggggaaac      3600
     gatcccgaga cccgtcgatc gatcactggc tacgtctaca tggaggctgg tggttcgatc      3660
     tcatggagct gcaggaagca gaccacggtg gcgctatcga cgatggaagc ggagtacatg      3720
     gccgtctcag ctgctactca agaggcactg tggtggcgcg gactgctgaa ggagctgttt      3780
     ggtgtcgctc aaccggtcac gatctactgt gacaacatga gcgcggtgca cctggcggag      3840
     aaggagatcg gctactcgcc ccgaagcaag cacatcgata ttcggcacca ctttgtgcgc      3900
     gagaacgtcg aggagaagct gatcaagctg gagcacgtcg caacggaggc gcagaaggcg      3960
     gacgtgttca cgaaaccggt agctgtttca aaatttcttg aagcacggaa ggctctcgga      4020
     attcacggtt gagagggga                                                   4039
//
ID   Copia-10_CQ-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   AAWU01001056;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_CQ_;
KW   Copia-10_CQ-I; Copia-10_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 336-336 (2011).
XX
DR   GenBank; AAWU01001056; Positions   14036   14171.
XX
SQ   Sequence 136 BP; 39 A; 24 C; 30 G; 43 T; 0 other;
     tgttggcgaa gcaaccgttg aattaattaa ttagttatag taagctacga ctagggtgaa        60
     ttgaataaag ctagtcattc gttgtctatc actcgaacct agtagacgta tctactgcct       120
     ttaggttatg ggccca                                                       136
//
ID   Copia-10_DTa-I repbase;    DNA;    INV; 3973 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3973
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, paired flanking LTRs are 97%
CC   identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(60..221,225..722,726..2048,2052..2990,
FT                 2957..3136,3135..3701)
FT                 /product="Copia-10_DTa-I_1p"
FT                 /translation="MEKSKRNIKPFDGEKYAMWKFRVKALLSENDSIKVID
FT                 ETGGEISDENAVEKTDEEKLEKLAKNTIIEYLSDSFLSFVTNDCSAKEIFH
FT                 NLDLIYERKSLATQLSVRKQLLSLKLKGDMDLINHFNIFDDLIAELSASGA
FT                 KLDDMDKVSHLLLSLPVSYDGVITAIETLAENNLTLAFVENRLLDHEIKLK
FT                 QKSKDTSLKVLQAVNKINEVNNFQNRNNQFYKNYKFQDKVPFKSKFKFNKQ
FT                 KCFYCGKIGHLKKDCYKYKKEKENENNKEKQAQLAQGQKETERSGFAFMLK
FT                 RHNNISDGHISFLLDSGASDHLTNNENLLSNVCHLESPIKIAVAKSDEFIF
FT                 ATKKGSMELLTNNFINVTLNDVLFCSDVSQNLISVKKMQDAGFTIVFRPEG
FT                 VLVSKDKFNIMDAHFIDNVPSVRFKNAFVSSKINFNIWHERLGHISQGKFL
FT                 EIKNHNLFEDTNLLTNVNPVNDLCEACIKRKQTRLLFEKVKNKDHIDRPLF
FT                 VIHSDVFGPIRPPTVNKKNYYVVFIDQYTHYCVTYLLTYKSDVFAAFRDFI
FT                 LKSEAHFNLKVVNLYIDNGREYLSNEMREFCVEKGISYHLTIPHTPQQNGV
FT                 SERMIRSITEKARALVRGANLQKSFWGEAVLTAAYLINRSPSNALKELLKT
FT                 PYKRWHNKRPSLYLKVFGSTVYVHIKLRKRKFDEKSWKSILVGYEPNGYRV
FT                 WCIGKEIFVTARDVVVDETNMAKSRAVVEDDMHLNIEDDESIQSNIDNENV
FT                 LNINGKSDQADEQPSKMVEFENADPEMSGEKSYEKEDLESQINIRKSDRIK
FT                 NKPKVSYQDLINNCVMHTQSLINSIPIKFVEVKYSKDKTNWKKAIKEELDS
FT                 HSLNKAWSIVQKPENKNIVDCRWVFTIKQNEFGEPIKYKARLVARGFTQEY
FT                 LVDFNETFAPVARIWSFRLIMSIANQYDLLVHHMDVKTAFLNGILIHEGLI
FT                 SRENEVCRLHMVSSKQKLKTTYGLKQAETEIGFVNSPVDRCIYLLDKGDIF
FT                 SNIYILLYVDDLVISTKNKQVMNDLLINIKLYLMNKFRMTDLNEIKFFLGI
FT                 KVDKSDDHISLSQSAYIKATLLKYNMEHCNPVNCPLPTKLNHIALSSDDKC
FT                 DAPCRNVIGCLMYIMLCTRPDLTTAVNFLSRYCEKNNKELWQCLKKVLRYL
FT                 KGTVDLKLSFQKNLNFNEFLVGYVDLDWGGSESDRTSLQIADMLTKPLPAQ
FT                 SFCDLRDQMNLIN"
XX
SQ   Sequence 3973 BP; 1490 A; 529 C; 706 G; 1248 T; 0 other;
     ggttatgggc ccagatcccc atcgaagata agtacacctt gtgatttaca tttactatca        60
     tggaaaaatc aaaaagaaat attaaaccat tcgacggcga aaaatatgcg atgtggaaat       120
     ttcgagttaa agcgctttta agcgaaaatg attcgattaa agtaattgat gaaactggtg       180
     gtgaaattag tgatgaaaat gcggttgaaa aaactgatga gtgagaaaag ttagagaaat       240
     tggcaaaaaa tacaattatt gaatatttaa gtgattcctt cttaagtttc gtcacaaatg       300
     actgcagtgc taaagaaatt tttcataatt tagacttaat atatgaacgc aaaagtttgg       360
     ctacacagtt gtccgtccga aaacaattac tttcacttaa actaaaaggc gatatggatt       420
     tgataaacca tttcaatata tttgatgatc taatagcgga actttctgca tctggcgcga       480
     aattagatga catggacaag gtcagccatc ttttgctttc tctacctgtt tcgtatgacg       540
     gcgtcattac cgccatcgaa acactcgcag aaaataattt gactttggct ttcgtcgaaa       600
     atagattact tgatcatgaa attaagttaa agcaaaaatc taaagataca agtttaaaag       660
     tattgcaagc tgtgaataaa ataaatgaag taaacaactt tcaaaataga aataatcagt       720
     tttaatataa aaattataag tttcaagata aagtcccatt taaatccaaa ttcaaattta       780
     ataaacaaaa atgtttttac tgtggcaaga tagggcactt aaagaaggat tgctataaat       840
     ataagaaaga gaaagaaaat gaaaataata aagaaaaaca ggcacaattg gctcaagggc       900
     aaaaagagac agagagatct ggttttgcat ttatgctcaa acgtcacaac aatattagtg       960
     atgggcatat ttcattccta ttggactcgg gtgcatctga tcacttgacc aacaacgaaa      1020
     atctactctc aaacgtttgt catcttgaat caccaatcaa aatcgctgtt gcaaagtcgg      1080
     acgaatttat atttgcaact aaaaagggat ctatggaatt gctaaccaat aattttatca      1140
     acgttacctt aaatgatgta ctattttgtt ctgatgtatc acaaaacctt atttctgtta      1200
     aaaagatgca agatgctggt tttacgattg tatttcgtcc agaaggtgtg cttgtgagta      1260
     aagataaatt taatataatg gatgcacatt ttattgataa tgtcccttct gtgagattta      1320
     agaatgcatt tgtatcaagt aaaataaatt ttaacatatg gcatgagagg ttagggcata      1380
     taagtcaggg aaaatttctt gaaattaaaa accacaattt atttgaagat actaatttgc      1440
     taactaatgt taatccagtt aatgatttat gcgaagcctg tataaaacga aaacaaacta      1500
     ggcttctttt tgaaaaggtt aaaaataaag atcacataga taggccatta tttgtaatac      1560
     attcagatgt ctttggtccg ataagacctc caacagtaaa taaaaagaat tactatgttg      1620
     tttttataga tcaatataca cattactgtg taacatattt gttaacttac aagtcagatg      1680
     tttttgctgc atttagggat tttattttaa aaagtgaagc ccattttaat ctgaaagttg      1740
     ttaatctgta catagataat gggagggaat atttatcaaa tgaaatgcga gaattttgtg      1800
     ttgaaaaagg catcagctac catttaacaa ttccacacac acctcagcaa aatggtgtat      1860
     ccgaaaggat gataaggtct ataactgaaa aagctcgtgc tttagttaga ggagccaacc      1920
     tacagaaaag tttctggggt gaagctgtat taacagcagc gtatttaata aatagaagtc      1980
     caagtaatgc acttaaagag ttattgaaaa caccatataa aaggtggcat aacaaaaggc      2040
     caagtttata atatttaaaa gtttttggtt ccacagtata tgttcatatt aaactacgaa      2100
     aaagaaagtt tgatgaaaag tcatggaaaa gtatacttgt ggggtatgaa ccaaatgggt      2160
     atagagtgtg gtgtattgga aaagaaatat ttgtaacagc aagagatgtt gttgttgatg      2220
     aaacaaatat ggcaaaatct agagctgtgg ttgaggatga catgcatctt aatattgaag      2280
     atgatgaaag tattcaatca aatattgata atgaaaatgt cctcaacatt aatgggaaat      2340
     ctgatcaagc agatgaacag cctagtaaaa tggtagaatt tgaaaatgcc gatccagaaa      2400
     tgtctggtga aaagtcttat gaaaaagaag acttggaatc gcagataaat attagaaaaa      2460
     gtgatcgaat aaagaataaa ccaaaagtat cttatcaaga tttaataaat aattgtgtaa      2520
     tgcatactca atctttaatc aattccatac caattaaatt tgtcgaggtt aaatatagta      2580
     aagataaaac aaattggaag aaagctatta aagaagaact ggactcacac tcattaaata      2640
     aggcttggtc aattgtacaa aagcctgaaa ataaaaatat agttgattgt agatgggttt      2700
     ttacaatcaa acaaaatgaa ttcggcgaac caataaaata taaagctaga cttgttgctc      2760
     gcggttttac gcaagaatac ttagttgatt ttaatgaaac atttgcacct gtagcaagaa      2820
     tctggagttt tagattgatt atgtctatag caaatcaata tgaccttttg gtacaccata      2880
     tggatgttaa aacagcattt ttgaatggaa tattaataca cgaaggtcta attagtagag      2940
     aaaatgaagt ttgtagacta catatggtct caagcaagca gaaactgaaa taggctttgt      3000
     taattcacca gtagatcgtt gtatatatct tcttgacaaa ggggatatat tctctaacat      3060
     atatattcta ttatatgtag atgatttagt aatctctacc aaaaataaac aagttatgaa      3120
     cgatttatta ataaattaaa ttatacctaa tgaacaaatt tagaatgact gatttaaatg      3180
     agattaaatt tttcttaggt ataaaagttg ataaaagtga tgatcatata agtcttagtc      3240
     aatctgctta cataaaagca acacttttaa aatataatat ggaacattgc aatcctgtta      3300
     actgtcctct gccaactaaa cttaatcata ttgctcttag ctcagatgat aagtgtgatg      3360
     ccccatgtcg aaatgtaata ggatgtttaa tgtatattat gttatgtaca agacctgatt      3420
     taactacagc cgttaatttt ttaagtcgtt attgtgaaaa gaataacaaa gaactttggc      3480
     aatgcctgaa gaaagtttta aggtacctaa agggtacagt tgatttaaag ttatcttttc      3540
     agaaaaactt aaattttaat gagtttttgg tcggctatgt ggacttagat tggggtggca      3600
     gtgaatcaga tagaacaagt ttacaaatcg cagatatgct aactaaacca ttaccagcgc      3660
     aaagtttttg tgatctgcga gatcaaatga atttgataaa ctgaagaaat ggaatgaaat      3720
     ggatctcatt gaaaatcaag cggttgtttc aactttaagt tttttttttt tatgatttga      3780
     aatgaaattg tttaacgtaa attataattt tataccttat acagtctggt tgggtttttg      3840
     tgggttttct tcaatccttg caacaaatgt tggactggaa ttgtacaact cccactatag      3900
     catatactga cacttttctt atattaagta aactataaat taagtaaaca tatatactat      3960
     ttttgaggag gtg                                                         3973
//
ID   Copia-10_DTa-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-10_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-322
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5637-5637 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 322 BP; 101 A; 58 C; 51 G; 112 T; 0 other;
     tgtggaaata tcacattatt aaaggcaaaa acagtatata tacataaatc gaatatcgat        60
     aggtttttgg catttctgga ttatgcggcc ttactattcc ttttatacta ttcttcctct       120
     ttctacttgg ttccttgttc aataaacacg tgtgtctgct atcagctaaa atatctgcaa       180
     caaagtgttt ctttatttgt tcttactgga tatatacaaa aacgagaagt caagacaaac       240
     caaggagata ctaaggagta atatctgtgt tccactacta aaaggctctg cggatcaagc       300
     tgttttctac agattttcta ca                                                322
//
ID   Copia-10_LH-I repbase;    DNA;    INV; 4156 BP.
XX
AC   ADOQ01017637;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_LH_;
KW   Copia-10_LH-LTR; Copia-10_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4156
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017637; Positions    5368    1213.
XX
CC   Positions [1505-2035] - Integrase core
CC   'TAATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..4099
FT                 /product="Copia-10_LH-I_1p"
FT                 /translation="MHSSIQHIEKLAEGNYEAWRMQMKSVLIFNDLWGYTS
FT                 GEITRPETKVQIINWTNKDEKALALITLSISKTELGHIRRATTSKQAWDKL
FT                 GKIHSSKGPVRKAVLYRQLYNLRKNSSDSMSQYINVFQEKINLLEDAGIEI
FT                 PPELQSIMLLNSLPEDYENFCVAIESRDQIPAIDFIKGKIIEEEARRQGCI
FT                 NKEDGTTSALVSRKQSTHKGASASANKKSMKWDQNKKKFDGNCFNCGKYGH
FT                 QANHCRLKKKNSSANQAEKAKDEEDSLIAVSALVCSAEKDEWCLDSDATSH
FT                 MCNNKNAFETVTNGPLSNISTAGKENIISHGTGTVRLNIKLHDRVKSVKLT
FT                 NVLYVPGLRNNLLLVSAITEKKFKVKFTENNAYITRPDNSLVFIATRRNRM
FT                 YVVKEDTNQKAFNVNNVSNFKLILWHERYGHLNYQDLKELSDKNRVYGLYF
FT                 PQHSQKLSCGICDQAKIHVLPFGEGTRAKNVLELVHTDICGPMNVKSFGNA
FT                 RYFATFIDDKTRYVEIVFLKSRSDILEEFKKYQLRVEKETGRKITKLRSDN
FT                 AKEYVSKEFNDYLESQGIRRQLSVEYTPQQNGVAERANRTIVEMARAMLIQ
FT                 SNVPKGLWAEAVNTAAFLRNRCPAKANNSITPYELWTGNKPNVKFLKIFGS
FT                 HATFLKKGPGITKFDPKGEKAIFVGYSSEAKAYRLWIPGTTRIIKSRDVRF
FT                 IEVTNDNKVETIDIELLSKTNVIDETETLESVGNKENVEIEESSELENLND
FT                 PLDVSTYEDASDTLNGELPTPEHSKRSRSRPKIVRTGNPGRPKKQYHMANV
FT                 AIGISNRDPNTIEEVLERSDKETWLNAMKDEYNSLLECNTWDLVDKTPDMR
FT                 IISCRWVFHIKRFQNGEIDRYKARLVARECKQKYGIDYVEVYAPVARIQTI
FT                 RTLLAISVEMGYHVHQMEVITAYIQGDLLETVYMSQPPMFENNSNKICRLR
FT                 RPIYGLKQSGRAWQQKLSKRLKEIGLSASEIEPCVYNGNINGYNVIVVVYV
FT                 DDLLLASKSIEVLNKVKLELSQFFKMKDLGPVSEILGMQVERDDDTGTIKI
FT                 SQRKYINEIIERFGMSSCNSVSTPLSSGIKLTKETETLDEKGEIQDKPYRE
FT                 LIGSLLYLANTTRPDISFTVGALSKYNLNPRVQHWKCAKHVLRYLKQTVDY
FT                 KIIYRKTGKPLYVYTDADWTGDQDDRKSCSGNVHILAGGPISWFSRKQTSV
FT                 ALSTMEAEYVALSEATKETIHLRRLIKAIYGDKYVCDPTTILCDNQSAIVL
FT                 SKEHMLHQRSKHIEIRWHFSRDAQSKGLIDTKFIPTNENTADILTKSLVKD
FT                 KHLNCVHSLSLTGN"
XX
SQ   Sequence 4156 BP; 1613 A; 637 C; 865 G; 1041 T; 0 other;
     ggttatggac ccaggcacgt ggtaccaaaa agtgaaaaag gggaaaacgt atatatatat        60
     tgtgtaagca aaaatataaa gtgaggttac cggtcattct tgggctacga aaaaggttaa       120
     gatgcatagc agcatacagc acattgagaa gttggccgag ggaaactatg aggcatggag       180
     aatgcaaatg aagagcgtat tgattttcaa tgatctctgg ggctacacca gcggtgaaat       240
     cacaagacct gaaacgaagg tacaaataat aaattggaca aacaaagatg agaaagcgct       300
     cgcactcatc acgttgagca tatcaaaaac agaattagga catataagaa gagctacaac       360
     ttcaaagcag gcatgggata aattaggaaa aattcatagt tcaaagggcc ccgtaaggaa       420
     agcagtgtta tacagacagt tatataacct aaggaaaaac tcttccgatt caatgtcgca       480
     gtacataaat gtatttcaag agaaaattaa tctattagaa gacgcaggaa tagaaattcc       540
     gcctgagctg caatcaataa tgttattaaa tagcctacct gaagattatg aaaacttctg       600
     cgtagccatt gaatcaagag atcaaatacc agcgatagat ttcataaaag gtaaaattat       660
     agaagaagag gcaagacgcc aaggatgcat taataaagag gatggaacaa cttcggcact       720
     ggtttcccgg aaacagagta cacacaaggg agcatctgca tctgcaaata aaaagtcaat       780
     gaagtgggac caaaataaga agaaatttga tggaaattgt ttcaattgtg gcaagtatgg       840
     gcatcaggca aatcattgtc gactcaaaaa gaaaaatagc tcggcaaatc aagcagaaaa       900
     agcaaaagat gaagaagact cgttgatcgc agtttcagct ctggtgtgtt cagcagaaaa       960
     agacgaatgg tgcttagata gtgatgcaac atcacatatg tgtaacaata agaacgcgtt      1020
     tgagactgta actaatggac cacttagtaa tataagtaca gccggaaaag agaacataat      1080
     atcgcacgga acagggactg tgagacttaa tattaagctg catgatagag taaaatcagt      1140
     aaaattaact aacgtattat atgtacccgg gttaagaaac aatttgttat tagtttcagc      1200
     aataactgaa aagaaattta aagtaaaatt caccgagaat aacgcatata ttacaaggcc      1260
     agataactca ttagtattta tagccactag gagaaataga atgtatgttg ttaaagagga      1320
     tacaaatcaa aaagctttca atgttaataa tgtttctaac ttcaaattga tactatggca      1380
     cgaaaggtat ggtcatttaa attatcagga tttaaaggaa ttatcggaca aaaatagagt      1440
     ttacggtttg tattttccgc aacatagtca aaaattatca tgcgggatat gcgatcaagc      1500
     aaaaattcat gtgctaccgt ttggtgaagg tactcgagca aaaaatgttt tagaattggt      1560
     gcacacagac atatgcgggc ctatgaatgt aaagtctttt ggaaatgcac gatattttgc      1620
     aacctttatc gacgacaaaa cacgatacgt agaaatagta tttttaaaat cacgcagtga      1680
     tattttggaa gaattcaaaa aatatcaatt acgcgttgaa aaagaaactg gtcgtaaaat      1740
     aactaaatta cggagtgata acgctaaaga atatgtgagt aaagaattta acgattactt      1800
     agaaagtcag ggtattagga gacaattgtc tgtggaatac acaccacagc aaaatggagt      1860
     agcggaacgc gcgaatagga caattgttga aatggcacgg gcaatgttaa tacaatcaaa      1920
     tgtacctaaa ggattatggg ctgaagccgt taatacggcg gcgtttttac ggaatagatg      1980
     ccctgccaaa gcaaataaca gcataactcc atatgaattg tggacaggta acaagcctaa      2040
     cgttaagttc ttaaagatat ttggctcaca tgcaacattt ttaaagaaag gaccaggcat      2100
     cacaaaattt gatccgaaag gagaaaaagc aatttttgtc ggttattcta gcgaagcaaa      2160
     ggcttataga ttatggattc ccggtacaac aagaataatt aaaagtaggg acgttagatt      2220
     tattgaagtg acaaatgata ataaagtaga aactatagat atagagttat tgtcgaaaac      2280
     aaacgttata gatgagactg aaacattaga gagcgtagga aataaagaaa atgtagaaat      2340
     agaagaaagt agtgagttag aaaatctaaa cgatccgtta gatgttagca cgtacgaaga      2400
     tgcaagtgac acactgaatg gagaattgcc aactcctgag catagcaaaa gatctcgcag      2460
     taggcctaaa attgtgagaa ctggtaatcc aggacgtcct aagaaacagt atcacatggc      2520
     aaatgttgca ataggcatat caaacagaga tcctaacacg atagaggaag tcttagaaag      2580
     atccgacaaa gaaacatggt taaatgccat gaaagatgaa tataattcac tgttagaatg      2640
     taatacatgg gatttggttg ataaaactcc agatatgaga ataatttcat gtagatgggt      2700
     ctttcacata aaaagatttc aaaacggaga aatagataga tacaaagcaa gattagtcgc      2760
     acgagaatgt aaacaaaaat atggcattga ttatgtagaa gtttacgctc cagttgctcg      2820
     aatacaaaca ataaggacac ttttagcgat tagtgtagaa atgggttatc atgtacatca      2880
     aatggaagta attacagcgt atatacaagg tgatctatta gaaactgtat acatgagcca      2940
     acctcctatg tttgaaaaca atagtaataa gatatgtcgt ttgcgccgcc cgatctatgg      3000
     tttaaaacaa tctggccgag catggcaaca gaaacttagc aagaggctga aagaaatcgg      3060
     gcttagtgca tctgaaatag aaccttgtgt ttataacggt aatattaatg gttataatgt      3120
     aatagtggtt gtatatgtag acgacttgtt gttggcgtca aaatcgatag aagtcttaaa      3180
     caaagtgaag ttagaattaa gtcaattctt taaaatgaaa gatttagggc ctgtgagtga      3240
     aatattggga atgcaagttg aaagagatga cgacacagga acaataaaaa tttcacaaag      3300
     aaaatatata aatgaaataa ttgaacgatt tggaatgagt tcatgcaact ctgtgtctac      3360
     tcctctatct tcgggtatta agttaacgaa agaaacagag actttagatg aaaaaggcga      3420
     aatacaagat aaaccgtata gagagttaat aggtagtctt ctttatttgg ctaatacaac      3480
     aagacccgat atttcattca ctgtaggagc tttaagtaaa tacaacttaa accccagagt      3540
     acaacattgg aaatgcgcaa aacacgtatt acgatatcta aagcaaactg ttgactataa      3600
     aataatatac cgaaaaactg gaaaaccatt atatgtatat accgatgcag attggacagg      3660
     cgaccaagat gatcgcaaat cctgctcggg gaatgtacat atactagctg gaggaccaat      3720
     tagttggttc tcaaggaaac aaacatcggt cgcactgtca acaatggaag cagagtacgt      3780
     tgccctttcc gaggcaacga aagaaactat tcatttacgt agattgatta aagctatata      3840
     cggcgataaa tatgtctgcg atccaacaac tattttatgc gataatcaaa gcgcaattgt      3900
     attgagtaaa gaacatatgc ttcaccaaag aagtaagcat atagaaataa gatggcactt      3960
     ttctagagat gcccaaagca aaggtctaat cgacacaaag tttattccta caaatgaaaa      4020
     tacagcagac atactaacaa aatctttggt gaaggataaa cacctcaact gcgttcattc      4080
     actaagcctt acaggaaatt aaacacgggc aatcacatat gttttaacat gcatgcgtgt      4140
     attctgatag aggaag                                                      4156
//
ID   Copia-10_LH-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   ADOQ01017637;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_LH_;
KW   Copia-10_LH-I; Copia-10_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-218
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017637; Positions    1212     995.
XX
SQ   Sequence 218 BP; 56 A; 35 C; 37 G; 90 T; 0 other;
     tgtaggaata tcataatata cacatgcata tcatagttat atatttttat tttttgcggg        60
     ctacggcgat ttagctggtt ttatgctact cttttagttt ctctttttgt tggtacgcct       120
     ggttcactgc tgttttgtat tgcttgcaca cgtgtaacga aaaacgttaa gtgatatata       180
     taagactaag tttgcttctt tcccctaaaa atttaaca                               218
//
ID   Copia-10_LMi-I repbase;    DNA;    INV; 3883 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3883
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3091-3091 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(216..395,350..487,459..656,656..790,842..1801,
FT                 1838..2101,2032..2376,2306..2827)
FT                 /product="Copia-10_LMi-I_1p"
FT                 /translation="MEVRSRRYLRLDDLWDVVDGTMKSTNQNYSTKDRKAK
FT                 SKLILLIDPVNYVHIEQGQFGINPSELRSYRTRTIWDKLRSAFEDGGLTRK
FT                 VGLLHELITTRLDKCKVRQLGWINVRFDEYVNKIIATNRLRNIGFEIADEC
FT                 IRTLLLAGLPERXAXMIMGLESSGIPITGDSVKMKILSVKIASSCHALRRN
FT                 SFALYSKNKKKKPVKCFDVRDGACISVSRERDQNKGKALSCFYSFEEMDNC
FT                 ELEWILDSGASVHIVKNKSLLYXVKDKTNMGISTVDGSKLQCHLAGKLDVH
FT                 VSVNGECDKITAHDVHYVENVATNLLSVGEIVRKGNTVTFDLHGAKIINEC
FT                 GEIIATASNDRGIFKLDTGTIDNKCKDVNHLVYSAEGFLWHRRLGHLNRKS
FT                 MCLMKNMVTGLQNYNMSKEPCEICIQGKQARLPFKTSKSKTSELLQLIHTD
FT                 VCGPMECESIGGSYYFLTFIDDYSRYICVYFLSSKDQVCDIFEEYRSMAER
FT                 WTGKKIKTVRSDNGTEYINQKFKKLLARMGIRHQLLGATSKKSKEHARLSK
FT                 DFWAEAVSTVYLNNRSPTKAVKNKTPYEIWIGKKPDLSNIRVFECKHGTNP
FT                 ETVERKMGSKSKKVHFVGSVRIQRATDEENGIQKQKGTFCGICENSKGYRL
FT                 MDPVNKNSYKQFFENRNNHRERTVPNSDVSTLDEEVESEEEEGKSQGQQEI
FT                 ICEDSELENETEESNVRHSSRIPKRKEYPDYELYAAQSFRDILLAYQNGKS
FT                 IQIMSYMQLNLLDDEPITAEEAISGPDSEFWKEELESLSQNETFEWVNTPG
FT                 DKKPLQTRWVFSLKDPESSSPKYKARLVVKGYSQKEGVDYKETFSPVVKYA
FT                 SLRYLLALAVKQNLIIHQTDVKTAYLNGKLEEEIYVIPPREAVKIRSERKN
FT                 IGVYEKYLWN"
XX
SQ   Sequence 3883 BP; 1429 A; 584 C; 899 G; 965 T; 6 other;
     ggttatgggc ccagaattgc attcggaata agtatattga tcatagtggc gaaaaaatat        60
     cggaaaagtt ccgagtactg tacaaatgtt acgtaggtgc tacctgtaga agacgattat       120
     acttcacaca ccaaaaaagg gaagttattg tgaaaaatga gtgcggcaca aattccgcaa       180
     attgaaagac ttgtaggtcg cgaaaattac gccacatgga agttcgcagt agaaggtatt       240
     tacgtttaga cgatctatgg gatgtggtgg acggaacaat gaaatccact aaccagaatt       300
     attcgacgaa agatagaaaa gcaaaatcaa aacttatact attgattgac ccagtgaatt       360
     acgttcatat agaacaagga caatttggga taaattaaga agtgcattcg aggatggtgg       420
     tcttacgaga aaagtaggat tactgcatga gttaataaca actcggttgg ataaatgtaa       480
     ggttcgatga atacgtgaat aaaataatag ctacgaacag actgagaaac ataggatttg       540
     agatcgccga tgaatgtatc agaacgctat tgttggcggg actgcccgag aggtamgcgc       600
     mgatgattat gggacttgaa agctcaggca taccaatcac aggcgacagt gttaaatgaa       660
     aattctaagt gtaaaaattg cttcaagctg tcatgcattg agaaggaaca gcttcgcact       720
     ttattcaaaa aataaaaaga agaaaccagt gaagtgtttt gatgtcagag atggggcatg       780
     catctcagtg taagaaatta atccagtcag acacgcagca gagaaggtat ggtacagata       840
     gtccagagag agggaccaaa ataaaggtaa ggcactctca tgtttttatt cttttgaaga       900
     gatggacaat tgtgaactag aatggattct agactcaggt gcatctgtgc atattgttaa       960
     aaataaatca cttctttatk atgttaaaga taagacaaat atggggatat ctactgtgga      1020
     tggaagcaag ctacagtgtc atctggctgg gaaactagat gtacatgtca gtgtaaatgg      1080
     tgaatgtgat aaaatcacag cacatgatgt tcattatgta gaaaatgttg caaccaacct      1140
     gctgtctgta ggggagattg tcaggaaggg aaacacagtc acatttgact tgcatggagc      1200
     aaaaataatc aatgaatgtg gtgaaattat agctacagca agtaatgaca ggggtatttt      1260
     taaattagat actggcacca ttgacaataa atgtaaagat gttaatcatt tagtgtattc      1320
     tgcagaaggt tttctatggc accggagact tggacattta aataggaaga gtatgtgtct      1380
     aatgaagaat atggtaacag ggttacaaaa ttataatatg tctaaggaac catgtgagat      1440
     atgcatacaa gggaaacagg caaggttacc tttcaagact agtaaaagta aaaccagtga      1500
     actcttacag ttaattcaca ctgatgtatg tggcccgatg gagtgtgagt ccataggtgg      1560
     aagttattat tttcttacat ttattgatga ttattctcgt tacatttgtg tttattttct      1620
     tagttctaag gatcaagtgt gtgatatatt tgaggaatat cgcagtatgg ctgaaaggtg      1680
     gacaggaaag aagataaaga cagttagatc tgataatgga acagaatata ttaaccagaa      1740
     attcaagaaa cttctggcaa ggatgggtat cagacaccag ctattaggcg ccacttcaaa      1800
     atagggttgc tgagagggca aataggacct tagttgaaaa agcaaggagc atgcaaggtt      1860
     atcaaaggac ttctgggctg aagcagtgtc aacagtatat ctgaacaata gatcaccaac      1920
     aaaagctgta aagaacaaaa ctccttatga gatatggata gggaagaaac cagatctaag      1980
     caatattaga gtttttgaat gtaagcatgg cacaaatccc gaaacagttg agaggaaaat      2040
     gggatccaaa agcaaaaagg tacattttgt gggatctgtg agaattcaaa gggctaccga      2100
     ttaatggatc cagtgaataa aaatagttac aagcagttct ttgaaaatag aaacaaccac      2160
     cgagagagaa ctgtacctaa ctcagatgtc agtacattgg acgaagaagt agagagtgaa      2220
     gaagaggaag gaaaaagtca agggcaacaa gagataatct gtgaagacag tgagctagaa      2280
     aatgaaacgg aagaaagtaa tgtaagacat tcttctcgca taccaaaacg gaaagagtat      2340
     ccagattatg agttatatgc agctcaatct tttagatgat gagccaataa cagcagagga      2400
     ggcaatcagt gggccagatt ctgaattttg gaaagaagaa ctggaatctt tatctcagaa      2460
     tgaaacattt gaatgggtaa atacaccagg ggataagaaa ccattacaga caagatgggt      2520
     gttcagttta aaggatcctg agagctcwtc cccaaaatat aaagcaagac ttgtggtaaa      2580
     aggwtattct caaaaagaag gtgttgacta taaagaaact ttttccccag ttgtgaaata      2640
     tgcatcactg aggtatctmc tggctctggc agtgaaacaa aatttaataa tccaccagac      2700
     ggatgtaaaa acagcatatt taaatgggaa attagaggaa gagatatatg tcataccacc      2760
     aagagaagct gtgaaaataa gatcagaaag gaaaaacatc ggcgtttacg aaaagtattt      2820
     atggaattaa acaaagcaac ttgctggaat cggtgtctac gtgaaacttt aacgaatatg      2880
     aatatgaagc aatccaaggc agatcctaga atttattaca aaagaggaga aggacttata      2940
     tactggcaat atgggtggat gaccttttta tcccgtcaga aaatgaaaga caaatgagca      3000
     gttttaagaa gcaactgcaa accaagttta agatgcatga tttgggagaa gttaaaagat      3060
     atttaggcat gaagattaaa aggatgaaga taacaagact gagcataaat cagtcatcac      3120
     acacagaaaa aaattccaaa gaaatttgga tgagtgattt aagcccatag ctactccatg      3180
     gaagtagggg cagttaatgt aagtgagaca gatgtggatt gcgaaggatg taccttacct      3240
     agaagcagta ggaagtctgt tacatttgtc ccaaacatca agaccaggta ttgcatttgc      3300
     caccgatgca gtgagcagat attgcaagaa cccagagcaa aacactggaa acagtaaaga      3360
     aatttccggt atctaagggg aacctcaaat tatgaattaa gatatcataa agaaggtaat      3420
     gcaagactag agggctacag tgatgcagat tggggaagtg acttaggaga cagacactct      3480
     ccacggctgc gttttaaatt aatgggaggc ctcatttcat ggtcctgtca aagacaaaga      3540
     actgttgcat taagtacttg gaggccgagt acatggcatt atcttatacc acacaagaag      3600
     cattgtggct gaggacttta atgaatgaaa ttgaacctat atccagtgca gaacctacaa      3660
     agatcttctg tgataacaag ggactattaa cttggcaaat aatgagttac tagtgccagg      3720
     caaaacatat tgattatcga atacgacacc atttcattcg agaccacacc gagcggcaga      3780
     acattgaagt ggactacatg tgtactgaag aaatgctggc tggcctttga caaaaccctt      3840
     ggataaggaa aaatttgaga agattgtaca actacaaggg gaa                        3883
//
ID   Copia-10_LMi-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-10_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-217
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3092-3092 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 217 BP; 60 A; 33 C; 31 G; 92 T; 1 other;
     tgttgggtct atgaacatta tatttcgtgt atgacggcaa caagtgtgtt gcttataaaa        60
     catactctct ggcttttgta ttccttgtaa ttttatatat attatttgct tgtcatgttt       120
     ttcagttgtt ccttgtattt tatcctcgaa tgatcagtat aatastaaag aaaaacaaat       180
     tatcaatttt acttattccg ctgcgctaat tctaaca                                217
//
ID   Copia-10_SI-I repbase;    DNA;    INV; 4071 BP.
XX
AC   AEAQ01016285;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_SI_;
KW   Copia-10_SI-LTR; Copia-10_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4071
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01016285; Positions    4862     792.
XX
CC   Positions [1563-2063] - Integrase core
CC   'AAAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..4037
FT                 /product="Copia-10_SI-I_1p"
FT                 /translation="MADDEKYKVPLFDGTNYSNWKFRMQVLLEEHDLFDFV
FT                 EKSLDTLISELPTTSAGTQSVTVRKSDRKCKSLITQRIADSHLEYVKEKPT
FT                 AFEMGRALSESFERRGVASQLRLRKMLLTMRYVTTETMAAHFLKFDKLIRE
FT                 LKSTGATLEETDIVCHLLLTMPEEYNMVVTALETLSSEQLTLGFVKTRLLD
FT                 EEAKRGGTSASGKGANSPAVFSAATANRKVNANKHDGTTNEKQRERFGFKC
FT                 HHCGILGHKRSECRKFKQGNKNSSSAKVAFDEDVDKSRKEFVFIAKEENAI
FT                 ASTCWFLDSGSSEHLATKETRLINMRNITPSVTIRVAKSGQVLTASEVGDL
FT                 SVCVRANGEVRKILISGVLSVPGLECNLLSVRKLEMNGFTVTFKDGKGIIH
FT                 KENIIAAIAHRTEKLYKLHFEYNSEVTNICETEENFLLWHQRLGHLSSAGM
FT                 KKLLRMADGIKLKDTDLSSEVCEVCVDGKQTCLPHQTKRIRAKRPLQLVHS
FT                 DLCGPIDITSFDGKRYLLTFIDDYTHFTVAYTLKAKTEVLRHFKMFQSMAE
FT                 AHFNLKISRFRCDNGREYLSNEIRQHFENCGVQYEFTIRYTPQQNGVAERM
FT                 NRTIIEKARCMILNSKMNKTFWSEAVIAAVYLINRSPTIALKGKVPAELWF
FT                 GEKPNLRKLRVFGCVAYLHIPKELVNGKFESRSKHCKMVGYCANGYRLWCP
FT                 EDNKIIFGRDVVFNESKFAFESRDFYNGLIQRNPEEVTNAEETSTSGGEEE
FT                 EEAESDETDTTRKQDVNNLRKSTRKKKQPKYLEDYTILALHAESFVENVPE
FT                 DFDDIQGRDDKEQWLSAVNEEMKSLIDNKIWDLVPLPPGKKAIDNRWVFRI
FT                 KRDHDGNIDKYKARLVIKGCSQRKGLDYNETYAPVARLTTVRTLLSVVNKF
FT                 KLKTRQLDVKNAFLHGTINEVIYMKQPQGFAKNNGLACKLNRSLYGLKQAP
FT                 RAWNSRFHEFIIQQGFERSERDSCLYTVFSKNNRIFLLLYVDDIIIAGDNE
FT                 QWMHRIVNSLRGEFSMKDMGELKTFLGIRIEQTAEGMFLNQKTYMKNLLSR
FT                 FGMTECNPSKTPMEVNPGKHEELEEETVIELKPFRELVGCLMYLMLTTRPD
FT                 LSVAVNFYSRFQSNAKLAHWKGLKRILRYIKGTLNHGLFFKCDSNLEVPLQ
FT                 IYVDANWATDNDRKSTTGYLLQVFGSTVDWSTKKQGGVTLSSTEAEYVALA
FT                 TALTEAIWLKGLLESFGVHVDDPIKVFEDNQSVIHLLGRWDHRRLKHVDIK
FT                 YNFVRNMYQNKEIDVQYLNTKEQIADMLTKSLERGQFVKLRSYIGVCEI"
XX
SQ   Sequence 4071 BP; 1329 A; 727 C; 975 G; 1040 T; 0 other;
     ggttatgggc ccagttaatt gacacgtata gataaaggaa catagtcacg gaaatctcag        60
     tttgtaattt cgagaagttt gcaaggaaga aagaaaacgt gactacaatg gcggacgacg       120
     agaaatacaa agtcccatta ttcgacggaa cgaactatag caactggaag ttccggatgc       180
     aggttctgct tgaggagcac gatctcttcg atttcgtcga gaagtcgctt gatacgttaa       240
     tctcagagct gccgacaaca tctgcaggca ctcaaagtgt cacggtgagg aaaagtgata       300
     ggaagtgtaa atcgttgatc acgcagcgca tcgctgacag ccatctcgaa tatgtgaagg       360
     agaaacctac tgcatttgag atggggcggg ccctttcgga aagcttcgag cgaagaggag       420
     tagcgagtca acttcgtctg aggaagatgc tgctgaccat gcggtatgtt actacggaaa       480
     caatggcagc acatttctta aagttcgata aacttatacg tgaattgaag tcgaccggtg       540
     ctactttaga agaaacggat atagtgtgcc atttgttgtt gacaatgccg gaagaatata       600
     atatggtagt gacggctttg gaaacacttt cgagtgaaca attaactctt ggtttcgtta       660
     aaacgagatt gctggatgaa gaggcgaagc gaggtggcac gagtgcgagt ggaaaaggcg       720
     cgaactcgcc agcagttttt tcggctgcga cggccaatcg gaaagtaaat gcaaataagc       780
     acgatggcac aactaacgaa aagcaacgcg agcgttttgg tttcaaatgt catcattgtg       840
     gtatacttgg gcataagcgg tcggagtgtc gtaaatttaa acaaggaaat aaaaattcga       900
     gctcggcaaa ggtcgcgttc gacgaagatg tcgacaaaag tcgaaaagaa ttcgtgttca       960
     ttgctaaaga agagaacgcc attgcctcta cgtgttggtt tttggactca ggatcctcag      1020
     aacatttagc aacgaaggaa acacgcttaa ttaatatgcg gaatataacg ccttctgtga      1080
     ctattcgcgt cgcgaaatca ggacaagttc taactgcatc cgaagttggt gatttatccg      1140
     tatgtgtgcg agcaaacgga gaagttagga aaatcttaat atccggagtt ctgtctgtgc      1200
     ctggacttga gtgtaatctt ctttcggttc gcaaattgga aatgaacggg ttcacggtaa      1260
     cttttaaaga cgggaaagga ataatccata aggagaatat aattgctgca attgctcatc      1320
     gtacggagaa actgtataaa ctgcattttg aatataattc ggaggtcacg aatatttgcg      1380
     agacagagga gaattttttg ttgtggcatc aacgattagg ccatctaagc agtgcaggaa      1440
     tgaagaaact tttaaggatg gctgacggaa taaaacttaa ggacacagat ctctcgtcag      1500
     aggtatgcga ggtatgcgtg gatggtaagc agacctgtct acctcatcaa actaaacgta      1560
     tcagagcaaa gcgtcctctc caactggtgc atagcgattt atgcggccct atagatatta      1620
     cgtcattcga tggaaaaagg tatttattaa cattcattga tgattatacg cattttacag      1680
     tagcatacac attaaaagcc aaaacggaag tactaaggca tttcaaaatg tttcaatcaa      1740
     tggcggaagc acatttcaat ttgaagatta gcagattcag atgcgacaat ggaagggaat      1800
     atctctccaa tgagattcga caacatttcg agaactgcgg agtccaatat gagtttacca      1860
     ttcgttatac gcctcagcag aatggagtgg ctgaacggat gaaccgaacc ataattgaaa      1920
     aagcacggtg tatgatcttg aactccaaga tgaataaaac attctggtcg gaagcggtaa      1980
     tagcagcagt ctatctaatt aatcgtagcc caacaatcgc gctgaaaggg aaagtaccag      2040
     ctgaactctg gtttggagaa aaaccaaatc ttcgcaaatt aagagttttt ggatgcgttg      2100
     catatcttca tattccaaag gagctggtaa acggaaaatt cgagtcccgt tctaaacatt      2160
     gcaagatggt cgggtattgt gccaatggtt atcgactctg gtgtcctgaa gacaacaaga      2220
     taatattcgg acgagacgtt gttttcaatg agtcaaagtt cgcatttgaa agcagggatt      2280
     tttataacgg tttaattcaa aggaatccag aggaagtaac aaatgctgag gaaacctcga      2340
     cttcaggcgg agaagaagag gaagaagccg agtcggacga gaccgataca acacggaagc      2400
     aggacgtcaa caatctgcgg aaaagcacac ggaagaaaaa gcagcccaaa tatctagaag      2460
     attatacgat tctggcgctt catgcggaat cattcgtgga aaatgtacct gaagactttg      2520
     atgacatcca aggaagagat gataaggaac aatggctgag tgcagttaat gaagaaatga      2580
     aatcactcat tgacaataag atttgggatt tggttccatt accgcctgga aagaaagcta      2640
     ttgacaacag gtgggtgttc agaattaaaa gagaccacga tggaaatatc gataaatata      2700
     aagcacggct tgtaattaaa gggtgctcgc agaggaaggg tctggattat aatgaaacct      2760
     atgcgcctgt cgcacgtcta acaactgtac gaacccttct atcagttgta aataaattca      2820
     agttgaagac cagacaacta gatgtcaaga atgcttttct acacggaaca atcaacgaag      2880
     tgatttatat gaaacaacct caagggtttg ccaaaaacaa tggtcttgct tgtaagttaa      2940
     atcgctcgtt atatggccta aaacaagcac cacgagcatg gaactccagg tttcatgaat      3000
     tcattataca gcaaggtttt gaaagatcag aacgagatag ttgcctttac acagtttttt      3060
     caaagaataa ccgcattttt ctcttactat atgtggacga cattatcata gcaggagata      3120
     atgaacagtg gatgcacagg atcgtaaact cacttagggg tgaattctct atgaaggata      3180
     tgggtgaatt aaaaaccttt cttgggataa ggatcgagca gacggcggaa ggcatgtttt      3240
     tgaaccaaaa gacatatatg aagaatctcc tttctcgatt cggtatgaca gagtgtaatc      3300
     cttcgaagac accgatggaa gtaaatcccg gaaaacatga agaactcgag gaagaaacag      3360
     tgatcgagtt gaaacctttt agagagctcg tgggttgcct gatgtatctc atgcttacta      3420
     cacgacctga tctgagtgtt gccgtaaatt tctacagccg tttccagagt aacgctaaac      3480
     ttgcacactg gaagggattg aagcgaatcc ttagatacat taaaggcact ctaaatcatg      3540
     gactattttt taaatgtgac tcaaatctgg aagtgcctct ccagatatat gttgatgcaa      3600
     actgggccac ggataatgac cggaagtcaa caactggata tttacttcaa gttttcggat      3660
     ctacagtgga ctggtcaaca aagaaacagg gtggagtaac actatcctct acagaagcag      3720
     agtatgttgc cttggcaaca gcattaactg aagcaatttg gttaaaagga cttttggaaa      3780
     gctttggtgt gcacgtggat gatcctatca aggtgtttga ggacaatcaa tctgttattc      3840
     atttgttagg tagatgggat catcgtaggc ttaaacatgt agatataaag tacaattttg      3900
     ttcgtaatat gtaccaaaac aaggagatag atgtgcaata cctgaacact aaagaacaaa      3960
     tagcggacat gctgacaaag agccttgaaa gaggacagtt cgttaaactt cgttcttata      4020
     ttggagtttg tgaaatctaa atacattttg tttgcataca ttgaggcgga g               4071
//
ID   Copia-10_SI-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   AEAQ01016285;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-10_SI_;
KW   Copia-10_SI-I; Copia-10_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-238
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01016285; Positions     791     554.
XX
SQ   Sequence 238 BP; 52 A; 56 C; 40 G; 90 T; 0 other;
     tgttgagatg aacaatgtat aatcgccatg tctgaatgtc ggtaaagtga ctagggtctt        60
     ataagtttcg tttctatatt tcttttagtt tatgttttcc cgctacgcgg cggtacccgc       120
     tctctctcta ctctctgctc ctgcatccgc actgtcgttg tgtgtatctc tcaaaataaa       180
     tcttttgtag tattaattac ccgcgtatac ttttatctca aacccattga ctccatca         238
//
ID   Copia-110_AA-I repbase;    DNA;    INV; 4225 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-110_AA_;
KW   Copia-110_AA-LTR; Ty1_copia_Ele111; Copia-110_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4225
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1493-2002] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1682..4225
FT                 /product="Copia-110_AA-I_1p"
FT                 /translation="MAERQTGKKLKTIRTDNGKEFANRKLEDHLRRLGIRH
FT                 QTTADYTPEQNGLAERVNRTIVERARCMLFEANLPKAFWAEATATAVYLIN
FT                 RSPTKGHSATPEEVWSGRKPNLAHVRVFGSKVMAHVPKPKRKKWDAKAFEC
FT                 ILTGFDEDTKAYRLWDPKSKKIIKSRDVTFVSEAREKPSSSNSMQVAAPER
FT                 KVVRLDLGDPFPVHEDPEPVRTEAIDVEDGIVPVEEHQSSSEDEEFLDPIR
FT                 DVTNSALPPRSSSNPPESQALRRSGRERYLPGKLKDFFFPSRGLSSDRFSD
FT                 NQPESDVYVDAGSAIDLPGPAASDRQQGLAARRQPSTDGDPRTPSEALRGP
FT                 EAKLWKQAMDDEYRAQIENNTWELVELPPGRKAIGCKWIFKTKEDERGNVV
FT                 RHKARLVAQGFNQKYGVDFDEVFAPVAKQVTLRTLLTVASRRQMFVKHVDV
FT                 KTAYLHGKLDETIYMRQPEGYSTGGPNAVCLLKRSIYGLKQSARVWNQSID
FT                 AVLRQMGFNPSSADPCLYVRRKGNSYTYVLLYVDDMLVVCRTEEEFKAIHQ
FT                 ALRQHFNVTALGDVKHFLGIEIERDGNGFQLNQERYILKLAERFGLENAKP
FT                 SKIPLDPGYLQQKEEEHELRLPNNTQYLSLIGGLLYVAVNTRPDIAVSVSI
FT                 LAQKSSCPTQLDWHEAKRVLRYLKSTSNHKLILGSTADGLEMYADADWAGN
FT                 HRDRKSNSGFLIRLGGGVVSWASRKQTCVALSSTEAELVALTEACQELSWL
FT                 KKLMIDLGVNVSSPVTTFEDNQSCIRLVENGKIEKRSKHIATKYFFVRDLQ
FT                 EQQQIILKYCPTEFMLADILTKPLQHLRLKTLRDKLGVLNYIVEEE"
XX
SQ   Sequence 4225 BP; 1135 A; 999 C; 1189 G; 834 T; 68 other;
     awaggttatg ggccccagag agctcagata gttagaagaa cktagtwcaa gattcaagaa        60
     aagttctcga agcgtatcct csaagatggc acgammcggc ggaggmkwtt cagcgagkcg       120
     magagacgca gtccmgggtc ggakccattc matccatggt tcagcaagcc tgccgtcaat       180
     cgagctkcts cacggmcgcg acaactggtc kacstggagg ttcgckgtgc agacgttcct       240
     ggagctggaa gacttgtggg aagccgtgaa gccwgcgsag aacscmgacg ggacattcst       300
     tcmggtggcg atgcatcgaa ggaccggaga gckcgagcga aaatcatcct tttgctcgac       360
     ccggttaact acgtgcatgt gagggaagcc aagacagcac gggacacgtg gtcgaggctg       420
     gaagcagcgt tcgaggactc cggattgacc cggaaagtcg gcctgttgag aaaactcatc       480
     acaacctcct tggcaaccag caactccatg gagacgtttg ttaacgacat catagcaacc       540
     gcacaccaac tgcgtggaat tggcttcgag atcaccgacg agtggatagg aacacttttg       600
     ctggccggtt tacctgaaga atatcggccg atgatcatgg ctcttgaaaa ctccggagca       660
     gcgatcaccg gtgacgtgat caagacaaaa ctgctgcagg agatcagagt ctgccagcgt       720
     cgagtggggc cgcattcgct ggcaacaggc atggccggaa gccaatcaag caaagtgaaa       780
     aaccgaatcc atcagcaagc aamggtccga aatgcaggmg ctgcmagaag ttcggmcaca       840
     ttgcmaggga ktgcccgacg agaggtkccg aagaamggmg acggaaacgc ctggtgcacc       900
     gtgmtgtcag csgttgaaga ggacgataam gattggtatt tcgactckgg agcttccagt       960
     cattttacga agtcggmgsa gctctggagg aktttcgcma gtgcggcggm aaggttattg      1020
     ccgcgaacmg mggckcsatg tmmgattgtt gccaagggaa gcgtgaaatt gaaacccgca      1080
     tgctgcccga acgaccctgc gattacggtg gatgaggtgc aagtgattcc cgatttttca      1140
     tcgaatttgc tttcggtgag ccagatagtg magcgaggmc acacggttaa cgttcaacga      1200
     ggatggcgtc saagtcatca acccggcggg saggtaatcg cgactggtas kaggasmgcg      1260
     acctgttcaa gctggaccat ctggttcagt ckcgaagagc actggcgtgc tctgcctcgg      1320
     atgaacctgc agccctgtgg cacaggcgga ttggkcacat caaccgacag cttacatcgg      1380
     atgaagcgtg gcttggtctc tggaatcgaa tatgcagagc cgcccaggag tagacgacaa      1440
     gtgcaaggtc tgttcgatgg gaaagcagac gcgctmccgt ttmgsaagts cggttcaaga      1500
     gcgtagtgaa gtactggagc tggtmcactc cgatatcggc ggaccgatgg aggtcccatc      1560
     cctgggtggc agccgatact acctgacgtt cacggacgac aaatcacgca ggatcttcgt      1620
     ttacttcctg gaagasaagt cagcgcagaa tgtatacgaa gctttcgaaa atttccgatg      1680
     catggctgag cggcagacag gtaagaagct gaagactatt cgcacmgata acggcaagga      1740
     gttcgcgaat cggaaactgg aggaccatct gaggcgtctg gggatccgtc atcaaacaac      1800
     ggcggactac actcctgagc agaatggtct ggcggagcga gtcaacagaa ccatcgtcga      1860
     acgagcgcgg tgtatgcttt tcgaagcgaa tctcccgaaa gcgttctggg cagaagctac      1920
     agcgacagca gtctacctca tcaataggtc tcctaccaaa ggacactcgg cgaccccaga      1980
     ggaagtttgg agcggtagga aaccaaatct ggcgcacgtt cgtgttttcg gttcgaaggt      2040
     aatggcacac gttccgaagc cgaagcgcaa aaagtgggat gcgaaggcat tcgaatgtat      2100
     tctcactgga tttgacgagg atacaaaagc atatcgtctg tgggatccga aatcgaagaa      2160
     aatcatcaag agtcgagatg ttaccttcgt gagtgaagca agagagaaac catcgtcttc      2220
     caacagcatg caggttgcag ccccggagcg aaaagtcgta cgactagacc tgggcgatcc      2280
     gtttccggta catgaggatc ccgaaccggt acgaacagaa gcaatcgacg tcgaagatgg      2340
     aatagtgcct gtggaagaac atcaatcaag ctctgaagat gaagaatttc tagatccaat      2400
     tcgtgacgtg acaaactctg cgctccctcc gcgatcatct tcaaatccgc ccgagtcaca      2460
     ggcgttgagg cgcagcggac gggagcgcta cctgccaggc aagttaaaag attttttctt      2520
     tccgagtaga ggactctctt ccgatcgatt ttcagacaac caacccgagt ctgatgtcta      2580
     cgtggacgca ggaagcgcca tcgaccttcc tggacccgca gctagtgacc ggcaacaagg      2640
     actagcagcc aggcgtcaac catcaaccga tggtgatcca cgtactccgt ccgaagcatt      2700
     gaggggacct gaagcgaaac tgtggaagca agcaatggac gacgaatatc gagctcagat      2760
     cgagaacaac acgtgggagc tggtcgagct acctccgggc cgaaaagcga tcggctgcaa      2820
     gtggatcttc aaaacgaagg aggacgaaag aggaaacgtc gtgcggcaca aagcaagact      2880
     ggttgcacaa gggttcaacc agaaatacgg cgtggacttc gacgaggtct tcgcaccagt      2940
     tgctaagcag gtgaccctca ggacgctact cacggtggca agccgtcgtc agatgtttgt      3000
     gaagcacgtg gacgtcaaaa ccgcatacct tcatgggaag ttggatgaaa ccatctacat      3060
     gaggcaaccg gaaggatact ccacgggagg gccgaacgca gtatgcttac tgaagcgaag      3120
     catatacggg ctcaagcaat ccgcacgtgt gtggaatcag agcatcgatg cagttttgcg      3180
     gcaaatggga ttcaacccat catcggcaga tccctgtctg tacgtgcgga ggaaaggaaa      3240
     cagttacacg tacgttctac tctatgtcga cgacatgtta gtcgtttgca ggacagagga      3300
     ggagttcaag gctattcacc aggcgttgag gcaacatttc aacgtgacag cactaggaga      3360
     tgttaaacat ttcctaggaa tcgaaatcga gagggatggt aacggattcc agcttaatca      3420
     agaacggtac atcctgaagc tcgcagaacg gttcggtcta gaaaacgcca agccttcgaa      3480
     aatacccttg gatcctggct acctgcagca gaaggaggag gagcatgaac tacgtttgcc      3540
     gaacaacact caatacctga gtctcatcgg cggtctgctg tatgtagcag ttaatactcg      3600
     gcctgacata gctgtgagcg tttccattct ggctcaaaaa tcaagctgcc cgacacaact      3660
     ggactggcac gaggccaaga gagtgctcag gtacttgaaa tcgactagta atcacaaatt      3720
     gattctagga tccacagctg acgggctcga gatgtacgca gatgccgatt gggctggcaa      3780
     ccatcgcgat aggaagtcca attccggttt cctaatacga ctgggaggtg gcgtcgtcag      3840
     ttgggcatca aggaaacaaa cttgtgtggc gctgtcatca acggaggcgg agctcgttgc      3900
     cttaaccgag gcgtgccaag agctcagctg gctcaagaag ctgatgatcg atctaggtgt      3960
     caacgtttct tcgccagtta ccacattcga agacaaccaa agctgtattc gtctggtcga      4020
     aaacggcaag atagagaaga ggtcgaagca tatagccacg aaatacttct ttgttcgtga      4080
     tcttcaagag cagcagcaaa tcattctgaa gtattgtcct accgagttca tgttggctga      4140
     catactgacg aaaccgctgc agcatctacg attgaagaca ttaagggata agttaggagt      4200
     attgaactat attgtcgagg aggag                                            4225
//
ID   Copia-110_AA-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-110_AA_;
KW   Ty1_copia_Ele111; Copia-110_AA-I; Copia-110_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-141
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 141 BP; 39 A; 28 C; 26 G; 45 T; 3 other;
     tgtcggaagt aatgcgacaa ttagtattca tagtaggcta tgataaactg tacatagaaa        60
     gtagaaatat tttttttcat tcwtgttcca accgccgtac gtkaaggtag tttgktctct       120
     ggctcccacc gcatttcacc a                                                 141
//
ID   Copia-111_AA-I repbase;    DNA;    INV; 4669 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-111_AA_;
KW   Copia-111_AA-LTR; Ty1_copia_Ele79; Copia-111_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4669
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2313-2816] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..2867
FT                 /product="Copia-111_AA-I_2p"
FT                 /translation="MDQDESAVVSSRNESAVVSSRKKSATGSNRYESAVGR
FT                 DRDELAVGSSRNESAPGRGRGESAVGRARNESAVGSSRNESAVDSSRNELS
FT                 RSKNESGSSQDRGAVGSSRGRATGAIPKHGGRSRSEDGATSANHSRERAAG
FT                 VSRGESGHTATNRGRDNAAGESRSYIRNDAAGRGINRTVSQNRSRDQDGGV
FT                 HGWDRRDETPGRNRFGRLHDDDRNLGAAGGDWYDEEEGQYDAESSSRQYGR
FT                 VRTENIPSIRVTASDGLRTAEATNGMDNLLVPNAKTVMLIERRSQMVGVFE
FT                 GDEREFTPWKWRLMHHLSRLKLDYTVLRTPRQEPYGQPDPNATPAEEARRQ
FT                 ALYQKRCEDDCEAIDEIIFTIGNKPLQKLMHCQYAKECMDALSNAYQRGGT
FT                 LVAMSLRRQLFRLGDRQFHSLEELFKEHSRLCMELEYADPQGTHLEKIQTL
FT                 LGAVPHRLNHAVAAILMLPEPVLKTKPLDELHRMLLDAETIQRPERQPTNV
FT                 AMVAKPRDGIECFGCHQMGHYRNKCPNETKNKKFIRKKWIRQASSDRKDRE
FT                 HALMVSTRPVKQKRFVIDSGASNHMINDDTMMSDVENLDVNLIVTTAKQGE
FT                 HMKATKKGSVALKSVVGENKIKKLKLYNCLFIPGLQENLISVKRVVAQGKE
FT                 VHFSNKSVVIQEKSGEVIARGHLLNGLYWLDVHGNQPANNAMLCKNNGLVT
FT                 WHKRLGHLGQSSMEKLHRHSMIEGFEIKSSEFDSNTLQCDSCLFGKQTRER
FT                 FKDTEKPRSNRPLELVHSDVCGYFEEPTYEGYRYFVTFIDDFTHFTVVYLL
FT                 QHKSDVLSCFQLYEAMASAHFGKKIACLRSDNGSEYYGNDFIQFCARKGIQ
FT                 MVATVPYTPQQNGVSERMNRTLLDKARTMLHESNSPKELWGEAVYAATYLT
FT                 NRSPTNAMLEHKTPGAAGAGGAAAGPPRGRPPAIRRTKV"
FT   CDS           2867..4669
FT                 /product="Copia-111_AA-I_1p"
FT                 /translation="MINDSIDMDNVTISHGGHPEEEIVDHNITINEVEDET
FT                 LDDTFITASDKESSIPEADPVQQTDRIQEQELRRNERTRKQPKWFADYETT
FT                 FLAGGNMQEIPQTVEHLKKRSDWNHWKDAIIQEMNSLDENQTWIPANTLGN
FT                 RKPVKSKWVFTIKDDDRYKARLVAKGCSQKPGLDYHDTFAPVANMNSIRVM
FT                 LSLANEHKLIIHQMDVKTAYLNGELNEEVFMELPADEFGKSKIVKLQKSLY
FT                 GLKQSGRSWNERFDGTMRKLGFVPLSNECCIYKMGQHQLYVVLYVDDVLII
FT                 GSSAKAISWIKNKLSDEFQMKDLKEISHFLGLDIRRDIENQVTEISQTGYI
FT                 ENILARFGMENCKPIATPMDANTNWDTKEVQPTEYPYKELLGCLQYLALSS
FT                 RPDINAAVNILSKYQSRATDVHWSGLKRILRYLKGTKATKIVYKKRQEEPI
FT                 LQGYADADFGNDVEDRKSISGYVFQVFGNMVSWATKRQPTVSLSSTEAELV
FT                 ALCTAAKEGMWLSHLLTELEVDNLPIVIHEDNIPCINFSKEPREHQRMKHI
FT                 DVKFVFIRDLIKKGDMKVIYKQTNDQPADALTKPLSKVQHHKLFGLLNMKI
FT                 EGT"
XX
SQ   Sequence 4669 BP; 1470 A; 910 C; 1216 G; 1073 T; 0 other;
     ggttatgggc ccaggccata ccaaggcgca acagaacgat ggaccaggac gaatcggctg        60
     tggttagcag caggaacgag tcggctgtgg ttagcagccg gaagaagtcg gctaccggta       120
     gcaatcggta cgagtcggct gtaggccgag accgggacga gttggctgtg ggcagcagtc       180
     ggaatgagtc ggctccaggc agaggccggg gcgagtcggc tgtaggcaga gcccggaacg       240
     agtcggctgt cggcagcagt cggaatgagt cggctgtgga tagcagccgg aacgaattga       300
     gtcgcagcaa gaacgagtcg ggcagcagcc aggacagagg ggctgtgggt agcagccgag       360
     gtcgagcgac aggagcaata cccaaacacg gtggcagaag tcggagcgag gacggagcaa       420
     ccagtgcaaa tcatagtcgt gagagagcgg ctggtgttag ccgtggtgaa agtggacata       480
     ctgccacaaa tcgtggcaga gataatgcgg ctggtgagag tcgcagttat atcagaaatg       540
     atgctgcagg ccgtggcata aacaggacgg ttagtcagaa tcgtagccgc gaccaggacg       600
     gtggagtgca cggttgggat cggcgtgacg aaacacctgg cagaaaccga ttcggcagat       660
     tgcacgatga tgatcgtaat cttggggcag caggtggcga ttggtacgat gaagaagaag       720
     gccagtacga cgccgaatct agtagcagac agtatggcag agtccgtaca gaaaatattc       780
     catcgatacg agtgacagca tcggacgggc ttcgtacggc cgaagccacc aatgggatgg       840
     ataatctttt ggtgccgaat gcgaagacgg tgatgctgat cgaaagacga agccaaatgg       900
     ttggcgtgtt cgagggagac gaacgagaat ttacgccatg gaaatggcgt ctgatgcatc       960
     atctgtcacg gttgaagctg gactatactg tgctgcgcac gcctcgacag gagccgtatg      1020
     gacaaccaga cccaaatgcc acacctgccg aagaagcacg tcggcaagcg ctttaccaaa      1080
     agcgttgcga agatgattgc gaggccatcg atgaaatcat cttcactata ggaaacaagc      1140
     ctctccagaa gctcatgcac tgccaatatg cgaaagagtg catggatgct ttgtcaaacg      1200
     cataccagag aggcggaaca ctggtggcta tgtcactacg ccgtcagctg ttcaggttgg      1260
     gagatcgcca attccactcc ctggaggaat tgttcaagga acattctcgg ctctgtatgg      1320
     agctggaata tgctgaccca caaggtacgc atctggagaa gattcaaaca ttgctcggag      1380
     cagtaccaca tcgtctgaac catgcggtgg cagcaattct catgctaccc gaaccggttt      1440
     tgaagaccaa gcctctcgac gaattacatc gaatgctgtt ggatgccgag acgattcagc      1500
     gaccggaacg acaaccgaca aatgtggcta tggtagccaa accgagggat ggcattgaat      1560
     gtttcggatg tcaccagatg ggccattacc ggaacaaatg cccgaatgaa acgaagaaca      1620
     aaaagttcat ccgaaagaag tggatcaggc aggcaagctc ggacaggaag gatcgagaac      1680
     acgcgctgat ggtttccacc agaccagtga agcaaaagcg tttcgtgatc gactcaggag      1740
     catcgaacca catgatcaat gatgatacca tgatgagtga tgtggagaat ttggatgtga      1800
     atttgattgt tactaccgca aagcagggtg agcacatgaa agcaaccaag aagggatcgg      1860
     tagcattgaa gtctgtagtt ggagagaata aaattaagaa gttgaagctg tataactgtc      1920
     tttttattcc tgggttacag gaaaatctga tttccgtgaa aagagttgtt gctcaaggga      1980
     aggaagtcca tttctccaac aaatccgttg taattcaaga gaaatctggc gaggttatcg      2040
     ctagagggca tcttttgaat ggattatatt ggcttgacgt tcatggaaac caaccggcca      2100
     ataatgcaat gctttgtaag aataatggtt tggtaacttg gcataagcgc ctcggacatc      2160
     ttggacaatc tagcatggag aaattgcatc gacattcaat gattgaagga tttgaaatta      2220
     aatcgagtga atttgacagt aacacgttac aatgcgattc atgcttgttt ggaaaacaaa      2280
     caagagaaag gttcaaggat acagaaaagc ctcgttcaaa cagaccgctt gaattggtac      2340
     actctgacgt ttgcggatat tttgaagaac cgacatacga aggatatcga tattttgtaa      2400
     cattcattga cgacttcaca cattttacgg tggtatacct tttgcagcac aaaagtgacg      2460
     tattgagttg tttccaacta tacgaagcaa tggcatcagc gcattttgga aagaagatag      2520
     cttgtttgcg ttcagataat ggttctgaat actatggaaa cgacttcatt caattctgtg      2580
     ccagaaaagg gattcaaatg gtagcgacag tgccatatac tccacaacag aatggggtaa      2640
     gcgagagaat gaataggaca cttttggata aggcacgaac tatgttgcac gagagtaatt      2700
     cgccaaaaga gctttgggga gaagccgtgt atgctgcaac ttatttgact aatagatctc      2760
     caacgaatgc gatgctggag cataaaactc ccggggcggc gggggcgggg ggcgcggccg      2820
     ccgggccccc ccggggccgg cccccggcca tacggagaac gaaagtatga ttaatgattc      2880
     tattgacatg gataatgtca ctatttccca tggaggtcat cctgaggaag aaattgtgga      2940
     tcataatata actatcaatg aagttgaaga cgaaaccctc gatgatacgt ttatcacagc      3000
     tagtgataaa gaatctagta ttccggaagc tgatccagtg caacagactg atcgaataca      3060
     agaacaagag ctacgaagaa atgaacgaac acgaaaacaa cccaaatggt ttgcggatta      3120
     cgagactaca tttcttgcgg gaggaaacat gcaagaaatt ccgcaaacgg ttgaacattt      3180
     gaagaaacga tccgattgga atcattggaa agacgccata atacaggaaa tgaattcact      3240
     ggatgaaaac caaacatgga ttcctgcaaa tacactgggg aaccgtaaac cagttaaatc      3300
     aaaatgggtg tttaccatta aagatgatga tcggtacaag gctagattgg ttgcgaaagg      3360
     ttgttcacag aaaccaggtc ttgactatca tgatactttt gcaccagtgg ccaatatgaa      3420
     tagcattaga gttatgttgt cattggcaaa cgaacacaag ctaattatcc accaaatgga      3480
     cgttaagaca gcttatttga atggagaact aaacgaagaa gtatttatgg aacttccagc      3540
     agatgaattt ggaaaatcaa aaatcgtcaa acttcaaaaa tccctttatg gattgaaaca      3600
     atctggtaga agttggaatg aacgatttga tggcaccatg agaaaacttg gatttgttcc      3660
     attgagcaac gaatgttgca tttataaaat gggtcaacat cagctctacg ttgttcttta      3720
     cgtcgatgat gtcctcatta ttggaagttc agctaaggct attagctgga tcaaaaacaa      3780
     actttcagat gaatttcaaa tgaaagattt gaaagaaatt tcacactttt tgggattgga      3840
     tatcagacga gatatcgaaa accaagttac ggaaatttct caaacgggat acattgagaa      3900
     tattctggca agatttggta tggaaaattg taagccaatt gcaacaccga tggatgctaa      3960
     taccaattgg gataccaaag aggttcaacc tactgaatat ccatacaaag aacttctcgg      4020
     atgtttacag tatttggctt tatcatcgag accagatatc aacgctgccg ttaatatatt      4080
     gagtaaatac cagtcacgtg caacggatgt tcactggagt ggactaaagc gtattttgag      4140
     atacttgaaa ggaaccaagg ctacgaagat cgtgtataag aaacgccaag aagaaccaat      4200
     actgcaagga tacgcggatg ccgactttgg aaacgacgta gaagacagga aatcgatttc      4260
     tggatatgtt ttccaagttt ttggaaatat ggtttcgtgg gcaacgaaac gtcaacctac      4320
     agtgagtctt tcatctacag aagcagagtt agttgctttg tgtaccgcag ccaaggaagg      4380
     aatgtggcta tcacatttgt tgacagaatt ggaagtggat aacttaccaa ttgtcataca      4440
     tgaagacaac atcccctgca tcaatttttc gaaggaacca cgagaacatc aacggatgaa      4500
     gcacatcgat gttaaatttg ttttcattag ggacttgatt aagaaaggag atatgaaggt      4560
     tatttataag caaactaatg atcaaccagc agatgcttta acaaagccgt tatcaaaagt      4620
     tcagcatcac aaattgtttg gattgctaaa catgaaaatt gaaggaacg                  4669
//
ID   Copia-111_AA-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-111_AA_;
KW   Ty1_copia_Ele79; Copia-111_AA-I; Copia-111_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-257
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 257 BP; 87 A; 49 C; 52 G; 69 T; 0 other;
     tgttgaggaa tcaattttca ttgttgtatc aatactttta tgcctcacta tgtacatata        60
     aggttaagcc tcactataac tgtagaatac gtgtgtagca aaaccatcgc tagtggacca       120
     tgaagcatca gaatcaatac cctgtgtacg accagacaag gcatcagttt tcagatcctt       180
     gctggcgaag gcaagataat aaaggaaggt ggatagcctc taagaagaag aaaacccgga       240
     gttttcaatt atcaaca                                                      257
//
ID   Copia-112_AA-I repbase;    DNA;    INV; 4130 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-112_AA_;
KW   Copia-112_AA-LTR; Copia-112_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4130
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1520-2017] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..3373
FT                 /product="Copia-112_AA-I_1p"
FT                 /translation="MADFKGLAFEKLNNRNWSTWKFRIEMLLTREEVWHVI
FT                 AEPKPEPVDDRWKKADQKARATIGLCVEESQYSLVKSVDSAKGYWDKLCAY
FT                 HEKSTITTQVALLNKLWSMNLSEGGDVECHIRELEEVYDRLAAAGHVLTES
FT                 FKIVLLFRSLPESYQGLATLLQSQLDAGTTMEAVKAKVLEEFERRNERSGR
FT                 VSGSASSEATAMKSATKKSREKSGAVKTCYHCGKPGHLRRDCRAWKNAKQG
FT                 DDEKKKPEAKQSAKKANDDESYVCFSATNSAKNNEWYVDSGASCHMTNDEQ
FT                 FFTKLVKKSGPSVVLADGKVVKTAGCGYGTLRGVSGSGNVIDVKLTDVLLV
FT                 PSLTSGLISVDKLTSKGFTAVFEARGCEIRDKTGEVVVVGDRYGGLYRLKL
FT                 GEASRKVEEKAHNPLCQHQWHRRFGHRHPGVINRISDEKLGNGMKVVDCGI
FT                 RLTCEPCIEGKLARNPIPKAAERKSTLPLDLVHTDLCGPMKTTTPGGKRFI
FT                 MTMIDDFSRYTVVYLLAKKSEAPGKIKEYVRFVQNLFGRKPKIVRSDGGGE
FT                 YCNQELRTFFAEEGIKAQYSTAYTPQQNGVAERKNRSLQEMARTMLLDASL
FT                 PTRYWGEAVVAAAFLQNRLPSRAVDTTPFEKWHGRKPELGYLRVYGCHAFV
FT                 HVPDVKRGKFDGKARKLRFIGYSEEHKGYRFVDTSTDKITISRDARFLELD
FT                 DGSSHGLAKDPSQEPVNTEVVWPLKENSDQQAEEEDVPAELPEDQDEDSMF
FT                 FDLEDQDAEADPLAVKQEEEDSEEEDREEAARSNQGAGVRQSGRRTRGVLP
FT                 NHLSDYVVGVAAHSELEPVTFEEAMSFPERDAWKSAMDSEMASHKKNGTWE
FT                 LVPLPKGKKLVGSRWVFKLKRNECNEIVRYKARIVAQGFTQTPGVDFGDVF
FT                 APVTRHATLRTLLALAGKKNLVVKHLDVRTAYLYGNISEEIYMKQPPGYVA
FT                 RGKEELVCRLRRSIYGLRQSARCWNERLTEVLKKMGFEASDADACLFVGTV
FT                 NGKKVYLIVYVDDFLVACESEQVITSVFEQLRKSFDIRCLGDVKRFLGLEV
FT                 QKKDDVYSVSLTNYIDQLVARVGLSEAKV"
XX
SQ   Sequence 4130 BP; 1070 A; 867 C; 1293 G; 893 T; 7 other;
     caggttatga gcccggtttg cgtttcggaa agtgcgggag gaaatttttg agaaattttc        60
     gtttcgtttg gcggcgtcgc gagtggctaa tcggcggtgg tagtgcattt gcaaaatggc       120
     ggatttcaag ggactcgctt tcgagaagtt gaacaatcga aattggagca cgtggaaatt       180
     ccgcattgaa atgttgctca cccgtgagga ggtttggcat gtgattgccg aaccgaagcc       240
     agagccagtg gacgaccggt ggaaaaaggc tgatcaaaag gcgagggcga ctattgggct       300
     ttgcgttgaa gaaagccaat atagcctagt gaaaagtgtc gattcggcga aagggtactg       360
     ggacaagtta tgtgcgtacc atgaaaaatc gacaatcacg acacaagtgg cattgctgaa       420
     caaattgtgg agcatgaatc tttcggaagg tggtgacgtt gagtgtcaca ttcgcgagtt       480
     agaagaagtg tatgaccggc ttgcggccgc ggggcacgtt ctgacggagt ccttcaagat       540
     tgtgttgttg ttcagaagtt tgcctgaatc gtatcagggg ctggcgactt tgctgcagag       600
     ccagctggat gcgggtacga cgatggaggc ggttaaagcg aaagtgcttg aagaatttga       660
     gcgccggaat gagcgttctg ggcgagtgag tggatcggcg agcagtgaag ctaccgccat       720
     gaaaagtgcg acaaagaaga gtcgagagaa gagtggtgcg gtgaaaacgt gctaccactg       780
     tgggaagccc ggtcatctcc ggcgtgattg tcgggcatgg aagaatgcaa agcagggtga       840
     cgatgaaaag aagaagcccg aagctaagca gagtgcgaag aaagccaacg atgacgaaag       900
     ttatgtgtgc ttttcggcta ccaacagtgc gaaaaacaat gaatggtacg tcgatagtgg       960
     tgccagctgt catatgacaa atgacgaaca gtttttcact aagctggtta agaaaagtgg      1020
     cccgagtgtt gtgttggcag acgggaaagt tgtgaaaacg gcgggttgtg gttatggcac      1080
     acttcgtggt gtgagcggaa gtggtaacgt cattgatgtg aagctaaccg acgttttgct      1140
     tgtgccgtcg ctaacgagcg gcttgatatc cgttgataag ctaacctcca aagggttcac      1200
     ggctgttttc gaggccagag gttgtgaaat tcgtgacaaa actggtgagg tcgttgttgt      1260
     cggtgaccga tatggtggct tgtatcggtt gaagcttggt gaagcgtcga ggaaggtgga      1320
     agaaaaggcg cataatccgc tgtgccagca ccagtggcac cgacgttttg gccacaggca      1380
     tccgggagtg ataaacagga ttagtgatga gaagctaggt aacgggatga aggtcgtaga      1440
     ctgcggcatt cggcttacct gcgagccgtg catcgagggc aaactggctc ggaatccgat      1500
     cccgaaagcg gcggaacgca aatcaacgct gccgttggat ttggtccaca cagatctctg      1560
     tgggccaatg aaaacgacaa cccccggcgg taagagattc atcatgacga tgattgacga      1620
     ctttagtcgt tataccgtgg tctacctact cgccaagaaa tcggaagcac caggtaagat      1680
     caaagaatat gttcgttttg tccaaaattt gttcggccgc aaacccaaga tcgtccgatc      1740
     tgatggcggc ggcgaatact gtaaccagga attgcgcaca ttctttgcgg aagagggaat      1800
     caaggcccaa tactctacgg cgtatactcc gcaacaaaat ggcgttgcgg agaggaaaaa      1860
     taggtcgctk caggagatgg ctcgaaccat gttactggat gctagtcttc ccacgcgtta      1920
     ttggggagag gcagtggtgg cagcggcgtt cttgcagaac aggcttccct cgcgtgctgt      1980
     ggatactact cccttcgaaa aatggcacgg acgcaaacca gagttaggat acctccgcgt      2040
     ctatgggtgc catgcgttcg tacacgtccc agatgttaaa cgcggtaagt ttgacgggaa      2100
     ggcgcgaaaa cttcgcttca ttggatattc cgaagaacat aaggggtaca ggtttgtcga      2160
     cacctctacc gacaagatca ccataagccg ggatgcgcga ttcctggagt tggatgatgg      2220
     atcttctcac ggcctggcga aggatccgag tcaggagccc gtgaacactg aagtggtatg      2280
     gccgctcaag gaaaactcgg accagcaagc tgaagaagag gatgttcctg cggaactgcc      2340
     tgaagatcaa gacgaggata gtatgttttt cgacctggaa gatcaggatg ccgaagctga      2400
     ccccctggct gtgaagcagg aggaggagga ctcggaggaa gaagaccgtg aagaagcagc      2460
     gcgatcgaat caaggagcgg gcgttcggca atcaggccgc cggacgcgtg gtgtgctacc      2520
     caaccacctg tcagattacg ttgttggtgt agcagcacat tcggagttgg aaccggtaac      2580
     tttcgaggag gcgatgtctt tcccggaacg agatgcttgg aaatcggcta tggacagtga      2640
     gatggcgtcc cacaaaaaga atggtacgtg ggagctagtt cctctcccga aaggcaagaa      2700
     actagttgga agccgatggg tattcaaact caagcggaat gaatgcaacg agatcgtgcg      2760
     ctataaggca cggattgtgg cgcaggggtt tacccagact cctggcgtgg actttggcga      2820
     cgtgtttgct ccggtgactc gccacgccac tctgcgaact cttttggcat tggctggaaa      2880
     gaagaatctc gtagtgaagc acctagacgt ccgaaccgct tatctgtacg gcaacataag      2940
     cgaggaaatc tacatgaagc agcccccggg atatgtcgct cgaggcaagg aggagcttgt      3000
     atgccggctg cgtaggagca tatacgggct gcgacaatcg gcccgctgct ggaacgagag      3060
     gctgacggaa gtgctgaaga agatggggtt cgaggcaagc gatgctgatg cgtgtctgtt      3120
     cgtgggcacc gtgaacggga agaaagtgta cttgatcgtt tatgtagacg attttctcgt      3180
     ggcatgcgag agcgaacaag tgatcaccag cgttttcgaa caactgagga agagttttga      3240
     cattcgatgc ctcggcgatg tgaaacgttt cctgggtctc gaagtacaga agaaagacga      3300
     tgtgtatagt gtgagcctga caaactatat agaccagttg gtagcgagag tgggactcag      3360
     tgaagcaaag gttkcaaaaa cgccgatgga caagggttta cttggtgatg aggtgaacga      3420
     taaaccgtta gaagacgkta cgaaatacag aagcgcggtg ggtgcactta tgtatattgc      3480
     cgtgtgcgct cgccccgaca tcatgamcag tgctgcaata cttggccgga agttcagtgc      3540
     acctwcggag agtgactgga cggcagccaa acgcgtaatc cgttacctca aaggaacacg      3600
     cgattggagg ctgattctcg gcggtgataa cgaagatctw gtggcatttt cggacagcga      3660
     ttgggcagga gataccggga cacggaagtc aactaccggc ttcgtgctat tttattcagg      3720
     aggagccgtt tcgtgggcaa gtcgccggca agactgtgtc acgctgtcga ctttagaagc      3780
     agagtacgtt gccctaacgg agacgtgcca agaggtggtc tggatgcgac gactgcttcg      3840
     tgatcttgga gaggagcaga ctacagcgac ggttgttcac gaggacaatc agggatgcct      3900
     cagctttgct cagtccgagc gttctagcaa gcggtcgaag cacatagaaa caaagcgcca      3960
     cttcgtgaag aacctatgtg aacgaggcga ggttgcgttg gwgtattgcc cgacggagga      4020
     catgaaggcg gacgttctaa cgaaaccgtt gggaagagtc aagcatcatc acttcgcgag      4080
     cgagcttgga ttggttggcg gtgtgccgag cgtcaaacat tgaggaggag                 4130
//
ID   Copia-112_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-112_AA_;
KW   Copia-112_AA-I; Copia-112_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 264 BP; 67 A; 70 C; 58 G; 69 T; 0 other;
     tgaagagaat aagcagtgtc ttgcccctcg tcaaccacat cctgtgcatt acttttccac        60
     tggggcgact gccgcacccc gacggcgacg gcagagcagt gtgtagagaa agagacagtg       120
     ttcagttcaa ctttgtacat ccgacgagaa acacgtagag taaaagtttc ctttattcag       180
     ttttcctaaa actcgtggtc gttccttttt ccggtaatcc gaaacatacg cggattcccc       240
     tgtgcggtaa atcatactct ccca                                              264
//
ID   Copia-113_AA-I repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-113_AA_;
KW   Copia-113_AA-LTR; Ty1_copia_Ele104; Copia-113_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4146
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1470-1994] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4136
FT                 /product="Copia-113_AA-I_1p"
FT                 /translation="MTNGQQVNGSGAGSQGTGSGGLPAAGGGAGVPAAGNG
FT                 RINAVALPIIEKLKGRENYTTWAFAMKMTLIREGSWYTVSPAQGQAIDDEV
FT                 SLRALATICLSLETTNYSLVQDAKDAKEAWDKLRNAFQDNGLTRRIGLLRK
FT                 LTSIRLDECGSVESYVDELMSTAHKLVGIGFRVDDTWLAALLLMGLPEHYE
FT                 PMIMGLEASGTALTSDAVKAKILQDVKLPSGPKTGGGDGALYSNPKSRRRG
FT                 GNNGPTKKDDTCHNCKKRGHFAAKCPQKQNSPRTAGKALCSVFAMGEVSDK
FT                 EWYFDSGATCHMSRSGDGFVEQHRMAHPVATANNGSMMSVAKGLVKLDLSE
FT                 GPIEVKEVLQIPELATNLLSISKICQKGLKVVFDADKCEVREHDGIVIASG
FT                 TQSGGLYKLNRKHEQAMLTPSTGIWHRRLGHLNRQSLRKLMAMADGIELAN
FT                 DVIPECIACIEGKHARNPFPSSESRAEGLLDLVHSDLVGPIEVPSVGGSRY
FT                 VMTFIDDASRKVFLYFLERKNEAFGAYENFKAMTERQTGRKLKVLRTDNGT
FT                 EYVNKTFRTSMAKDGVRHEKTCPYTPEQNGVAERMNRTLIEKARSMLNDSR
FT                 LPKEFWAEAVSTAAYLVNRSPTRSLQTTPEEAWTGKKPDLQHLRIFGSLAL
FT                 VHVPKQRRKKFDAKSQKAVFVGYADGTKGYRVYDPVKRSVQISRDVIVVQE
FT                 GEPQNLVGIGEEQQQIQFMELYTVDEPNASGGQHPVVEPSVGDDDVDEDDS
FT                 EESAASDSGSSDLEFMDVLDSENEPALPSQLGRPAVEQQGLRRSDRERRTP
FT                 GKYSDYVTYSSFSGEVVSPQSTPMCPKTSFDNPQSYEEALNGPDREKWIAA
FT                 MREEIAALEENETWELTSLPSDRKAIRNKWVFKTKRGPTGDIERYKARLVV
FT                 KGCSQRPGIDFDEVYSPVVRYSTIRYLLALAVKHDLDVEQMDAVTAFLQGE
FT                 LSDEVIYMELPRGFAGTSKQVCRLRKALYGLKQSSRVWNNQLDQALKKFGL
FT                 EQSKVDPCLYFRIDGENMIFVTIYVDDFMIFTNDAKLKQKLKSFLHNCFKM
FT                 KDLDEANFCLGLRITRDRKNGKLWVDQEHYVDSILQRFNMANCHPVSTPAE
FT                 ASVKLDKSMSPTTPEETREMKEVPYQEAVGCLTYLAQTTRPDISFAVNQVS
FT                 QFNANPGRTHWNAVKRIMRYLRGTRSSRLTYSKERCADLVGYTDADWGGEP
FT                 DSRKSTTGYVFTFMGGAVSWNVKRQPTVALSSCEAEYVALSRTVQEALWWH
FT                 HFQSQIFGVRAIPIRCDNQSAICIARNQGYNPRTKHMDIKHHFVRDVLDQG
FT                 VVELGYVNTKQQPADGFTKALVNQKLEENKKLIGFVA"
XX
SQ   Sequence 4146 BP; 1050 A; 1035 C; 1268 G; 793 T; 0 other;
     agaggttatg ggcccaggat tggccatagc caagaagaaa aatttttttt tctcaagaag        60
     tgaagccacg tggaagaagt tagttcaaga tgacgaacgg tcagcaggtg aacggaagcg       120
     gagctggatc gcagggcact ggaagcggag gactgccggc cgctggaggc ggagccggag       180
     tgccggccgc aggaaacggt cggatcaatg cggtcgctct accgatcatc gagaagctga       240
     aggggcgtga aaactacacc acgtgggcgt tcgccatgaa gatgacgctc attcgagaag       300
     gttcctggta cacggtgtcg ccagcccaag gccaggctat cgatgatgag gtcagtttgc       360
     gtgcgttggc cacaatttgc ttgagcctgg agacgacgaa ctacagtctc gtccaggacg       420
     caaaggatgc caaggaggcc tgggacaagc tgcggaacgc tttccaggac aacggtctga       480
     cgaggagaat cgggttgctg aggaagctca catccattcg gctggacgag tgcggcagcg       540
     tggaatcgta cgtcgacgag ctgatgtcca cagcgcataa acttgtggga atcggcttca       600
     gggtcgacga cacatggctt gctgcattgt tgctgatggg acttccggag cactacgaac       660
     ccatgattat gggacttgag gcgtcgggga ctgcgttaac gtcggacgcg gtgaaggcaa       720
     aaattttgca ggacgtgaag ctgccgagtg gacccaagac cggcggcggt gacggagcgt       780
     tgtactcgaa cccaaaatcg aggcggcgtg gcggcaacaa tggtcctacg aagaaggatg       840
     acacgtgcca caactgcaag aagcgggggc attttgcagc caagtgtcca cagaagcaaa       900
     actcaccaag aacggctggc aaagctttgt gcagcgtttt tgcgatgggc gaggtaagcg       960
     ataaagagtg gtatttcgat tccggcgcca cgtgccacat gtctcggagt ggcgatggtt      1020
     tcgtcgagca acaccgcatg gcgcacccgg tggcaacggc gaacaacggc agcatgatgt      1080
     cagtcgcgaa gggtctggtc aagttggatc tctcggaagg cccgatcgaa gtgaaggaag      1140
     tgctgcagat tccggaactg gccaccaatc tcctatccat cagcaagatt tgccaaaagg      1200
     ggctgaaggt ggtcttcgac gcggacaagt gtgaggttcg tgagcacgat gggatcgtga      1260
     tcgcatccgg tacgcagtca ggcggcctgt acaagctgaa ccggaagcac gagcaggcaa      1320
     tgcttacacc gagcaccggt atctggcacc gacggcttgg tcacctcaat cgtcagagct      1380
     tgcggaagct gatggcgatg gcagacggca tcgagttggc aaacgacgtc atccccgagt      1440
     gcatcgcttg tatcgagggt aagcatgcac gtaatccttt tccttccagt gagtcgcgag      1500
     ccgaagggct attggattta gtccactcgg acctggtcgg acccatcgaa gttccatctg      1560
     tcggtggcag tcgttatgtg atgacgttca tcgacgatgc gagtcgaaag gtgttcctct      1620
     atttcctgga acgaaagaac gaagcgtttg gggcctacga aaatttcaag gccatgaccg      1680
     agcgccagac agggaggaag ttgaaggttc tgaggacgga caacgggacc gaatacgtca      1740
     acaagacctt caggaccagc atggcgaaag atggagtgcg gcacgagaag acttgtccgt      1800
     acacccctga gcagaacggg gtagcggaga gaatgaaccg gacactcatc gagaaggcca      1860
     gaagcatgct aaacgattcg cgcctgccaa aagaattttg ggccgaggcg gtttcaacgg      1920
     cggcgtacct cgtcaaccga agcccgacga ggtcactcca gaccactcct gaagaagctt      1980
     ggaccggtaa gaagccggat ttgcaacatt tgcgcatttt cgggtcgcta gcactagtcc      2040
     acgtcccgaa gcaacgaagg aagaagttcg acgccaaatc ccagaaagcc gttttcgtag      2100
     gatatgccga tggtaccaag gggtaccgtg tgtacgatcc ggtcaagcgt tcagtccaga      2160
     tcagccgtga cgtgattgtg gttcaagagg gagaaccgca aaatttggtc ggaatcggcg      2220
     aggaacagca gcagatacag ttcatggagc tgtacacagt cgacgagccg aacgcaagtg      2280
     gcggacaaca cccggttgtg gaaccgagtg tcggcgacga cgatgtcgac gaagacgatt      2340
     ctgaggagtc ggctgcatcc gatagcggct caagtgatct tgagttcatg gacgtcctgg      2400
     attccgagaa tgagcctgcg ctcccgtcgc aacttggtag gccagctgtt gagcagcaag      2460
     ggcttaggcg cagcgaccgg gagcgccgaa ccccaggcaa gtattctgat tacgttacgt      2520
     atagttcgtt ttctggcgaa gttgtttccc cccagtccac cccgatgtgc cccaagacgt      2580
     cgttcgataa cccgcaaagc tacgaagaag ccctcaacgg accggatcgc gaaaagtgga      2640
     tcgcggccat gcgtgaggag atcgcagccc tggaggagaa cgaaacttgg gagctgacca      2700
     gtcttcctag tgacaggaag gccatccgaa acaagtgggt cttcaagacg aagcgaggac      2760
     caaccggtga catcgagcgg tacaaggcgc gcttggtggt gaaagggtgc tcacaacggc      2820
     caggcatcga cttcgacgaa gtgtattccc cggtggtacg gtattccacc attcgatacc      2880
     ttctggcgct ggcagtgaag cacgaccttg acgtggagca gatggatgcc gtcactgcgt      2940
     tccttcaagg ggaactatcg gacgaggtca tctacatgga gctaccgaga gggtttgctg      3000
     gcacctcgaa gcaagtgtgt cggttgcgaa aggcacttta cgggctcaaa cagtcgagcc      3060
     gtgtctggaa caaccagctg gaccaggcct tgaagaaatt cggactggag caatcgaagg      3120
     tcgacccgtg cctgtatttc cggatcgacg gtgagaatat gattttcgtc acaatctacg      3180
     tggacgattt catgatcttc accaacgatg ccaagctgaa gcagaagttg aaatcgtttc      3240
     tgcacaactg cttcaagatg aaggacctcg acgaagcgaa tttctgcctg ggactgagga      3300
     tcacgcggga caggaagaat ggcaagctgt gggtagatca ggagcactac gtcgacagca      3360
     ttttgcagcg gttcaacatg gcgaactgcc acccagtctc cacgccagcg gaggcgagtg      3420
     tcaagctgga caagtccatg tccccgacga caccggaaga gacgcgcgaa atgaaggagg      3480
     taccctacca ggaggcagtg ggctgtctca cgtatctggc gcaaacgacg cggccggata      3540
     tcagtttcgc ggtcaaccaa gttagccaat tcaacgcgaa tcccggacgt acccactgga      3600
     atgctgtcaa gcgcattatg cggtacctgc gaggcacccg atcgagccga ctgacgtact      3660
     ccaaggaacg ttgcgcggat ttggttggct acacagatgc cgattgggga ggagagccgg      3720
     attccaggaa gtccaccacc ggatacgtct tcacgttcat gggaggagct gtgtcgtgga      3780
     acgtaaaacg gcaaccaaca gttgcattgt cctcgtgcga agcggaatac gttgcgcttt      3840
     ctcgcacggt ccaggaagca ctttggtggc accacttcca atcgcagatt ttcggcgtgc      3900
     gagcgattcc catccggtgc gacaatcaat cagccatctg tatcgcacgg aaccaaggat      3960
     acaatccacg aacgaagcac atggacatta agcaccattt tgtccgagat gtgctggatc      4020
     aaggagtagt cgaactgggc tacgtgaaca caaagcagca acctgccgac ggattcacca      4080
     aggcccttgt aaatcagaag ctggaagaga ataagaagtt aattggattc gttgcttaag      4140
     gaggag                                                                 4146
//
ID   Copia-113_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-113_AA_;
KW   Ty1_copia_Ele104; Copia-113_AA-I; Copia-113_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-202
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 202 BP; 61 A; 42 C; 32 G; 67 T; 0 other;
     tgttgcaatc gaagcaatcc atgattattt gaatttgtaa ccaacgaata ccttcttatg        60
     tacccactct cttatgtact atagcgtagc cacctaggca ataccatagc aacacttagc       120
     gacgtaggtt gttgattagt aataaatttt cattattagt tagacgttca accagaacag       180
     tcgagtttta ctttactctg ca                                                202
//
ID   Copia-114_AA-I repbase;    DNA;    INV; 3989 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-114_AA_;
KW   Copia-114_AA-LTR; Ty1_copia_Ele29; Copia-114_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3989
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1412-1915] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(8..2182,2186..3979)
FT                 /product="Copia-114_AA-I_1p"
FT                 /translation="MGTTQKELAHGIPQFRGNGSEFQNWSYRVKLFIEAAG
FT                 VSVVLTGEAPEVEADRAKFVEMDRKAKSLLVSFISDECLEVVREKATAKEM
FT                 WESLEATYAKKSVASQTLIRKQLARLRMKEGNGMRSHLVEFDGLVRKLKTA
FT                 GATLAEGDLVSQLFLTLPDSYDPLVTALENVSEEDLTLDLVKQRLLAEESK
FT                 RSDRQEDASEDKPAAFSGSSQRKFDGKCHKCGMRGHMKKDCKQRGQDDGHS
FT                 NGARGNAHSNGRGKREANCVKRSAVSFMADASLSKRDRTNTVAFKLDSGCS
FT                 DHLVSQKSFFSSFETLVRPIEIKVAKEGQEMVARTIGKIDATSNKGVLFNM
FT                 KDVLFVPDLRENLMSVKKLARAGIDVVFSDNKALLKKRGEILATGKLVGSL
FT                 YEIVLTLENVCANVCETDPGTLWHRRLGHISQHGMDTMLREGMLQGIKKLP
FT                 TVGFCEACVQGKQCREPFNGTRSHASRPLERIHSDVCGPIDPTAWDGSKYI
FT                 VSFIDDYTHFAMIYLLKKKSDVFEKFREYEATVSAAFGLQISKITVDQGRE
FT                 YCSNAQKQYYKRKGIQIESTVAYTPQQNGVAERFNRTLVERIRAVLIDSGV
FT                 PKYLWSEAALACVYLLNRSPTVALPVGVSPAERWFGSKPSLDKLRVFGCRC
FT                 FAWIPNQQRKKLDPKSREMIMIGYAPNGYRLWDMQARKVRIARDVKFDEDT
FT                 FPYAQLKPVDDVPLVVNFPFEQEGESADEDLGIVPNEAESDSGGDEAAGGT
FT                 IEDGDISTDYEDSADALPSQIERHETPSEPVSRRSERERRLPGKLFDYFVN
FT                 YRATSGESISTDVPMRYDDIMQRDDRQQWLGAVKDELHSMAANNVWRFVKC
FT                 PDGVKPLKAKWVFRVKDDVNGNPVRYKARLVAKGFLQKAGLDYEETFAPVA
FT                 KLATIRTILAAGVHQGFSFHHMDVKTAFLYGELKENIYMAVPDGVKAPSNT
FT                 VCQLLKSLYGLKQSPRCWNEKFNEQLLKLGFTRSRHDYCLYTRIQDGDEIY
FT                 IVLYVDDLLICGRNPMTILKLKRQLTTMFAMTDCGEVSHFLGMRLDYDVRR
FT                 GSLRLTQEANVDKLLARFDMVDCNPVKTPMEKGIQLTRTGEPTDRPYRELL
FT                 GSLMYVMLCTRPDICYSVGFLGRFQQKPTTQHWQSLKRVVRFIKGTKTKCL
FT                 EYKRTESAEPLVGYVDADWASDVEDRKSVSGFIFLVFGNLVSWSSKKQTTV
FT                 ATSSSEAEYIALSSAVSEAVWLSGILDDLKLKSSNIPVTIYEDNQGCIGMA
FT                 KNCESKRSKHIDVRHHFVRDHISNGSVKIEYVRTEDQLADLFTKPMDASRL
FT                 GQLGRRLGIAD"
XX
SQ   Sequence 3989 BP; 1080 A; 873 C; 1124 G; 910 T; 2 other;
     ataggttatg ggcaccacac agaaagagct ggcgcacgga attccgcagt tccgcgggaa        60
     tggaagcgag ttccagaatt ggagttaccg ggtgaagctt ttcatcgaag cagctggcgt       120
     gtcagtggtt ctcaccgggg aagccccgga agtagaagct gatcgagcga agttcgtgga       180
     aatggaccgg aaggcgaaat cactgttggt gagttttatt tccgacgagt gcttggaagt       240
     cgttcgggaa aaggcaaccg caaaagaaat gtgggagagt ctggaggcaa cgtacgcgaa       300
     aaagtccgtg gccagccaga cgttgataag gaagcaactg gcacggctcc ggatgaaaga       360
     aggcaacggt atgcggagtc atctggtgga attcgatggg cttgtacgaa agctcaaaac       420
     ggccggtgca accctagcgg aaggggatct ggtgtctcaa cttttcctga cgctaccgga       480
     ctcgtacgac ccgttggtga cggcgctgga aaacgtaagc gaagaggatt taacgctcga       540
     tttggtgaag caacggcttt tggctgagga gtcaaaacgg tcggatcgac aagaagatgc       600
     cagcgaagac aagccggccg cattttccgg aagcagtcaa cgcaaattcg atggtaagtg       660
     ccacaaatgt ggcatgcgtg gtcacatgaa aaaagattgc aagcaacgtg gtcaagacga       720
     tgggcatagc aacggtgcac gtggtaacgc ccatagcaac gggcgaggaa aacgcgaagc       780
     caactgcgtt aaaagaagcg cggtgagctt catggcggac gcatcgttat caaaacgtga       840
     ccggaccaac actgtggcgt tcaaattgga ctctggctgc agcgatcatt tggtgagtca       900
     aaaatctttt ttctcgtcgt tcgaaacgct agtgcgccca atagaaataa aagtggcaaa       960
     agaaggtcag gagatggttg ccaggacgat cggtaagatt gatgcaacga gcaacaaggg      1020
     ggtcctgttc aacatgaagg atgtcctctt tgtcccggac ctgagagaaa atttgatgtc      1080
     ggtgaaaaag ctggcacgag ctggcatcga tgtagtgttc tccgacaaca aggctctgtt      1140
     gaagaaacgt ggcgaaattt tagcgaccgg caagttggta ggtagcctat acgaaatagt      1200
     gctgacgttg gaaaacgttt gcgcgaatgt ctgtgagacg gatccgggca cgctgtggca      1260
     tcggcggctg ggtcatatca gccaacatgg aatggacacc atgcttagag aaggtatgct      1320
     gcaaggaatc aagaagctac ccacggtcgg tttttgtgaa gcttgcgtgc aagggaaaca      1380
     gtgtcgtgag ccgttcaatg gaactagaag tcatgcaagt cgccccctcg agcgcattca      1440
     ctccgacgtk tgtggcccaa tcgacccgac agcctgggac gggtcaaagt acatcgtttc      1500
     cttcatcgac gactacacac attttgcgat gatctacctg ctcaagaaga aatccgacgt      1560
     ctttgaaaaa tttcgtgagt atgaagccac agtttccgcc gcatttgggt tgcagatttc      1620
     gaaaatcacc gttgaccaag ggagagaata ctgttctaac gcccagaaac agtattacaa      1680
     gcgaaaaggc atccaaattg aaagcaccgt tgcgtataca cctcaacaaa acggggttgc      1740
     tgagaggttc aaccgaactc tcgtagaaag aattcgtgcc gttctgattg attctggtgt      1800
     accaaaatat ctttggtccg aagcggcgtt ggcgtgcgtg tacttgttga accgaagccc      1860
     cacggttgcc ctaccggtcg gtgtttctcc ggctgaaaga tggtttggtt cgaagccaag      1920
     tttggacaag ttacgagtat ttgggtgtcg gtgtttcgca tggattccaa atcagcagcg      1980
     caaaaagttg gatccaaaga gccgtgagat gattatgatc ggctacgcac ccaacggata      2040
     tcggctttgg gacatgcaag cgcgaaaggt gaggattgct cgtgacgtaa aattcgacga      2100
     agatactttt ccgtatgctc agctgaagcc tgtcgacgat gttccactgg tggtgaattt      2160
     ccctttcgag caagaggggg aaakctctgc agatgaagat cttggcattg tgcctaacga      2220
     agctgaaagc gattctggtg gtgatgaggc tgctggtggc actattgagg atggcgacat      2280
     ttcaacggac tacgaggatt cagcagacgc gctcccttcg caaattgaaa gacacgaaac      2340
     tccgagtgag ccggtgtcga ggcgtagcga acgggagcgc aggcttcctg gtaagttgtt      2400
     cgattacttc gtaaactata gagcaacttc tggcgaatcg atttccacag atgtacccat      2460
     gcgttatgac gacatcatgc aacgtgacga ccgacaacaa tggcttggtg ccgttaagga      2520
     cgagctgcat tcgatggctg caaacaacgt gtggcgtttc gtcaagtgcc cggatggcgt      2580
     caaacccctt aaggccaaat gggtgttccg agtcaaggac gatgtgaatg gaaatccagt      2640
     gcggtacaag gcgcgacttg tcgccaaagg ttttcttcaa aaggctgggc tggattatga      2700
     agagacgttc gcccccgtgg cgaagctggc cacaattcga acgatactgg cagcgggcgt      2760
     tcaccaaggt ttttcctttc accacatgga cgtcaagaca gccttcctgt acggtgagtt      2820
     gaaggaaaac atctacatgg cggtcccgga tggagtcaaa gcaccgtcga acacagtatg      2880
     ccaacttctc aagtctctct atggcttgaa acaatcgcca agatgctgga atgagaaatt      2940
     caatgaacaa ttattgaaat tgggtttcac acgctcccgg catgattact gcctctatac      3000
     taggattcag gatggtgacg aaatctatat cgttctgtat gtggatgacc tgctgatatg      3060
     cggaaggaac ccaatgacca tcttgaagct gaaaaggcaa ttaaccacga tgtttgcgat      3120
     gaccgattgc ggggaagtca gccatttcct tggcatgcgt ttggactacg atgttaggcg      3180
     tggaagtcta cgtttaacgc aagaagctaa cgtagacaaa cttttggcgc gcttcgatat      3240
     ggtggactgt aatccagtga agactccaat ggaaaaagga atccaattaa ctcgaaccgg      3300
     ggaaccaacg gatcgtccgt acagagaact tctggggtcg ttgatgtacg tgatgttgtg      3360
     caccaggccg gacatctgct attccgttgg attcttagga cgatttcaac agaagccaac      3420
     cacacaacat tggcagagct tgaaaagggt ggtccggttc atcaaaggaa ccaaaactaa      3480
     atgtttggag tacaagcgaa ccgaatctgc cgagccattg gttggttacg tcgatgcgga      3540
     ctgggcttcg gacgtcgaag atcgtaagtc ggtgagtgga ttcattttcc tcgttttcgg      3600
     taatctcgtc agctggtcaa gtaagaagca aactacggtg gctacttcat ccagcgaggc      3660
     tgagtatatc gccctcagct ccgcggtttc cgaagcagtt tggctatctg gtatcctgga      3720
     tgatctgaag ttgaagagct ccaacattcc agttacaatc tacgaggaca accaaggttg      3780
     tattggaatg gcaaagaact gcgaatcaaa aaggtcgaag catatagatg taaggcatca      3840
     ttttgttcgc gatcatattt ccaacggcag tgtgaagatt gaatatgtac gcaccgaaga      3900
     tcaactagct gaccttttta ctaagccgat ggatgccagt cgattgggac aacttggacg      3960
     tcgtctcgga atagcggatt gagaggggg                                        3989
//
ID   Copia-114_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-114_AA_;
KW   Ty1_copia_Ele29; Copia-114_AA-I; Copia-114_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-232
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 232 BP; 59 A; 58 C; 42 G; 72 T; 1 other;
     tgtaatccaa gtagcaatcg gctattctgg tcattccatc catgctgggt ggcaatgcct        60
     gttgcatagc aaccaaccca acaaggtcgt agtaagctgc gacccatatt caaattgttc       120
     ttcctctttc aattttgcac atcgtgcagt atagtcgcat ttwaataaag ctccttaatt       180
     gttctcgaag tatccgcgtt tttcaattcc gagttccggt aacgaaatcc ca               232
//
ID   Copia-115_AA-I repbase;    DNA;    INV; 3988 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-115_AA_;
KW   Copia-115_AA-LTR; Ty1_copia_Ele6; Copia-115_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3988
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1414-1917] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..3306
FT                 /product="Copia-115_AA-I_1p"
FT                 /translation="MGPSMKEGSGIPQLTGPNYENWKFRVKLYLDAAEVSS
FT                 VLKAEAPAADHATRPKWDQLDRKAKSLLVGFLSDECLEVVREKDTAWSMWK
FT                 ALEETFAKRSVTSQTLLRKQLARLRMTEGSSMRNHFVAFDDLVRQLKSAGA
FT                 KLEESDLVSQLFLTLPDSFDPLVTALENLDEANLTLETVKQRLLAEESKRI
FT                 DRQDYASDDKGAAFVGGKKNERKKVIREFTGRCHRCKKTGHMKKDCPWKKS
FT                 DGNARYAVGNGKAVAFMGRSDESKTSSGGKILFCVDSGCSDHLVHDASRLK
FT                 SSRKLKEPFVVEVAKEGVSLVGKSTGELTGFSNKNVEFRMKNVIFIPDLRE
FT                 NLLSVKKLSQAGIDVLFTGRGGIERAEFKRNGEVIGVAYLRGNLYQLELEV
FT                 GYVGQANITAAEASRLWHRRLGHASQQAMETIAKHEMATGFTNKVDRIGFC
FT                 DTCVMGKQCREPFDGVRERATRPLERIHSDVCGPIDPPAWDGSRFFVSFID
FT                 DWTHFAMIYPIKRKSEVFSCFKQYEALVTAHWETKISKLTVDQGREYFSNE
FT                 QKRYYQKRGIQVQPTVAYSPQQNGVAERFNRTLVEKVRSMLIDSQMPKRMW
FT                 SEAAMAATYILNRSPTTALDGKVTPVEMWTKTKPDLSKLRIFGCKAMMWVP
FT                 NQLRKKLDPKSREAIMIGYAPNGYRLWDRSSRKVIIARDVKFDEDSFPLAC
FT                 NDAEAKQPLVIRTFYEPEGEPLDTTRADEVEVEEANDSNSEYGEADSDEQM
FT                 SDTSNPGALPSQERREDCLESTTRRSERERKLPGKLLDFFTGFRASTASEI
FT                 SASSDPPSTYKEIEHREDRDAWLAAISDELQSMEANNVWKFVPCPVGVKLL
FT                 QSKWVFCVKEDADGNVVRHKARLVVKGFLQKPGIDYHETYAPVAKLTTIRV
FT                 VLAVALQKGYYIHQTDVKTAFLHGELKENIFMAVPDGVQAAPGTVCQLRKS
FT                 LYGLKQSPRCWNEKLNEVLLKLGFKRSQHDYCVYTRIDERGSDVIYVILYV
FT                 DDLLIVGAKLNTIEDVKKKLSQHFKMTDCGEAKHFLGMKISYDRKQGRMEL
FT                 SQEASIKKILRNFSMEDCNTTKTPMEKGLQLFQATSE"
XX
SQ   Sequence 3988 BP; 1086 A; 840 C; 1151 G; 910 T; 1 other;
     tccgaagaga acctccttta ggttatgggc ccctcaatga aagaaggttc cggtatcccg        60
     cagctgactg gtccaaatta tgaaaattgg aagttccgag tcaagcttta cctggatgcg       120
     gcggaagtat cttcagtgtt gaaggcggaa gctccggctg cagaccatgc gacaagaccg       180
     aagtgggatc agctggacag aaaggcaaaa tcgctgctcg tcggcttcct gtcggatgaa       240
     tgtctggaag tagtccgtga aaaggacacc gcctggtcca tgtggaaggc ccttgaggag       300
     acatttgcga agcgatccgt gaccagccaa acccttttga ggaagcagct ggcaagatta       360
     cgtatgacgg agggatcttc tatgcggaat catttcgtgg ccttcgatga tcttgttcgc       420
     caactgaagt ctgcaggtgc caagctggag gagagtgact tggtgtcaca attattcttg       480
     accctaccgg atagcttcga cccgttggtg accgcacttg aaaatctgga cgaggcgaat       540
     ttgaccctgg aaacggtgaa gcagcggctg ctcgctgaag agtcgaagcg aattgatcgt       600
     caagattatg caagtgatga caagggtgca gcattcgtcg gagggaagaa gaatgaaaga       660
     aagaaggtta tccgtgaatt tactggaaga tgccaccggt gtaagaagac cggccatatg       720
     aagaaggact gtccctggaa gaagtccgat ggaaacgctc ggtatgcggt cggtaatggg       780
     aaggcagtcg cttttatggg aagatctgat gagtcgaaga cgtccagtgg cggtaaaatc       840
     ctgttctgtg tggactcggg gtgcagtgac caccttgtgc atgatgcaag ccgtctgaag       900
     tcgtcacgga agttgaagga accgtttgtc gtagaagttg cgaaggaagg cgtgtccttg       960
     gttggtaagt ctactggaga gctgacagga ttttcaaaca agaacgtgga attccgtatg      1020
     aagaacgtta tattcattcc ggatttgcgg gaaaatttac tttccgtgaa gaagctttct      1080
     caagccggaa tcgatgtcct gtttactggt cgaggaggta tcgagcgtgc ggaattcaag      1140
     cgtaacggtg aagtcattgg cgtggcatac ttgagaggta atctgtatca gctggagctg      1200
     gaagtcgggt acgtcggtca agctaacatc accgcggcgg aggcaagtcg attgtggcat      1260
     cgtcgattgg gacatgctag tcaacaggcc atggaaacca tcgcgaagca tgaaatggcg      1320
     accggtttta cgaacaaggt ggaccgcata gggttctgtg atacgtgtgt gatgggcaag      1380
     caatgccgtg agccgtttga cggagttcgt gagagagcca ctcgtccgtt ggagcgaatt      1440
     cactcagacg tgtgtgggcc gatagatccc ccggcctggg acggatcaag atttttcgtt      1500
     tccttcatcg atgattggac ccattttgca atgatttatc ctatcaagcg caagagtgaa      1560
     gtcttcagtt gcttcaagca gtatgaagct ttggttaccg cccactggga aacgaagatc      1620
     agcaagctta cggtggatca aggtcgcgaa tatttttcga atgagcagaa gcgatactat      1680
     cagaagagag gcatccaagt tcagccaaca gtggcgtact ctccgcagca aaacggagtt      1740
     gctgaacgct ttaatcgaac cctagttgag aaggtaaggt caatgttaat tgattcccag      1800
     atgcccaagc ggatgtggtc agaagcggcc atggcggcaa catacatcct gaatcggagt      1860
     cccacgacgg cgctcgatgg aaaagttacc ccagtggaaa tgtggacgaa aacaaagccg      1920
     gacctgagca agcttcgaat tttcggttgc aaggccatga tgtgggtccc gaaccagctg      1980
     aggaagaaac tagatccaaa gagccgtgaa gcaattatga ttggctatgc gccaaatggt      2040
     tatcgcttgt gggacaggtc gtcaagaaag gtcattattg caagagatgt caaatttgat      2100
     gaagacagtt ttccgcttgc ctgcaacgat gctgaagcaa aacagccgct ggtgattcgt      2160
     acgttctatg agccagaggg ggagcccttg gataccacta gagcagatga agttgaggtt      2220
     gaagaggcaa acgattcaaa cagcgaatat ggagaagctg attcggatga acaaatgtcc      2280
     gatacatcaa atcctggggc gctcccttcg caagaaagac gtgaagactg tttagagtca      2340
     accacgaggc gcagcgaacg ggagcgcaag ctcccaggta agctattaga ttttttcact      2400
     ggatttagag catccactgc ttctgagatt tccgcatctt cagatccacc atccacgtac      2460
     aaggaaatcg agcatcgtga ggatcgtgac gcctggttgg cagcgattag cgatgagcta      2520
     caatccatgg aggccaacaa cgtatggaag tttgtcccgt gtccggtcgg agtgaagctc      2580
     ctgcaatcca aatgggtgtt ctgcgtgaag gaggatgcgg atggaaacgt tgttcgtcat      2640
     aaagcgagac tggtcgttaa gggatttctc cagaagccgg gaatagacta tcacgaaacc      2700
     tacgcaccag tggccaagct gacgacaatc cgagtggttc tggcagttgc tttgcagaag      2760
     gggtactaca ttcatcaaac ggatgtgaaa acggctttcc tgcacgggga actgaaagag      2820
     aatattttca tggcggtccc tgatggcgtg caagcagcac ctggtacggt gtgccagctc      2880
     cggaaatcat tgtatgggtt aaagcagagc ccgcgatgct ggaacgagaa gcttaatgaa      2940
     gttttgttga agctcggttt caagaggtcg caacacgact attgtgtgta cacccggatc      3000
     gacgagaggg ggagtgacgt aatttacgtg atcctgtatg tcgacgacct gctgatcgtt      3060
     ggagcgaagc taaacaccat tgaggacgtg aagaaaaagt tatcccagca tttcaaaatg      3120
     actgactgcg gcgaagcgaa gcatttcctc ggaatgaaga tttcttatga taggaagcaa      3180
     ggacgaatgg agctgtcaca agaggccagt atcaagaaga ttctgaggaa cttttctatg      3240
     gaagactgta atacgactaa aacaccgatg gaaaagggcc tgcagctatt ccaagctacg      3300
     tcagaaktaa cagaagcacc atatcgagaa ttactgggga gtttaatgta cattatgatg      3360
     gctactcgac cggacatatg cttcccagta ggataccttg gacgttttca gcagcgacct      3420
     gatgcttcac gctggacagc tttgaagagg gtggtgcggt tcctgaaggg caccatgcag      3480
     acgtccctga agttctcacg caatgaacaa atggaaccct tggttggata tgccgatgct      3540
     gattgggcaa ctgaccaaca ggacagaaaa tcggtgagtg gttttctatt tcagatattc      3600
     gggaacgctg tttgttggtc aagtaagaag cagacgacgg tagcgacatc atccagtgag      3660
     gccgagtatg tggcactagg ttctggcgtg acagaagcta tatggctggc tggactgctt      3720
     gacgaccttg gcattcgagg cacaacaccg gtgacaattt atgaagacaa tcgtgggtgc      3780
     ataggaatgg ccaagaactt ggagagcaag cgtgcgaagc acattgatat caagcaccat      3840
     tttataaggg accatgtagc agccggtaac gtcaaggtgg agccaatcgg gactgagaac      3900
     caactcgctg atattttcac taagtcgttg gatgtcgggc gtttccagaa actatgtcga      3960
     actatcggac tccacgatcg agaggggg                                         3988
//
ID   Copia-115_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-115_AA_;
KW   Ty1_copia_Ele6; Copia-115_AA-I; Copia-115_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-186
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 186 BP; 58 A; 41 C; 41 G; 45 T; 1 other;
     tgaagaaata ggaggccgtg agcgatcggc caaaccgtag gtggccatga aatgatgagg        60
     catccgatcg tgtcagamac ttcagtcatt ccacaacaag ccttcaagca gacaagacat       120
     gtttcttaag caatagttaa ataaagctat tttagtttaa ctcggagctc gcttactatc       180
     tgccca                                                                  186
//
ID   Copia-116_AA-I repbase;    DNA;    INV; 1734 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-116_AA_;
KW   Copia-116_AA-LTR; Ty1_copia_Ele92; Copia-116_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1734
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   'CTTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..1658
FT                 /product="Copia-116_AA-I_1p"
FT                 /translation="MADVNKFAFARLNNQNWQIWKFRMEMLLTREELWYVV
FT                 GDARPAVVTDQWTKDDRKARATIGLCIDDNQFALVKEANSAKAFWDQLRAY
FT                 HEKNTVTSRVSLLKKLCSLNLAEEGDLESHLVVLDDLFDRLTNAGQQLEES
FT                 LRIAMILRSLPDSYGGLVTALESRADADITMQLVKSKLIEEFERRKERSGE
FT                 TCETKAMKSVVVRNEVQSVGGLGNRAPVRRCYFCDKPGHLRRNCRSFMLAK
FT                 QELERESEEKKKPDDRVRVRQNARQATDENCGASVCFMAGVDQRKCWYIDS
FT                 GASRHMTSDRNFFKSLKERKGPSVVLANGKVVTAAGCGDGIVHGVDGNGSE
FT                 VEIKLTDVLYVPSLASGLVSVDRLTKKKFTVKFMKDSCDICDTSGKKVVIG
FT                 EKSGSLYRLKLAKVEKKVEGQRPIIGEKKTTKGRSSPVSVVSWYSEKKPNR
FT                 AEEREEEEYFDANTSSEEVEPLHVAESNSGSPDSDADNWREVRRSRRSNRG
FT                 VRPSRLVDYVFDA"
XX
SQ   Sequence 1734 BP; 480 A; 302 C; 588 G; 364 T; 0 other;
     ggttattggc ccagcagtgc cgaagggaag gttccggatt gcgtaggaaa aaggttccga        60
     gagagcgaaa gtgatcacgc cgtgtgtgag tgtgagttgt ttctccgcag tggtgatttt       120
     acgtggacaa aatggcggat gtgaacaagt ttgcgtttgc tagactgaac aatcagaact       180
     ggcaaatatg gaagttccgg atggagatgc tcctgaccag ggaggagctg tggtatgtgg       240
     tcggtgatgc gaggccggct gtagtgaccg atcagtggac gaaagacgac cggaaagctc       300
     gtgccactat cggattgtgt attgatgata accagtttgc actggtgaag gaagcaaaca       360
     gtgcaaaagc gttttgggat cagttgcgtg cttatcacga gaagaacacg gtaacgtcac       420
     gtgtatcttt gctgaagaaa ctgtgctcgt taaatctcgc ggaagaaggt gaccttgaga       480
     gtcatctggt ggtgttggac gatttgttcg accgtttgac gaatgcaggc caacagctgg       540
     aggaatcgct gcggattgcg atgatcctgc gtagcttgcc tgattcgtac ggtggtttgg       600
     tcacggcgtt ggagagtcgt gccgatgccg atatcacgat gcagctagtg aagtcgaagc       660
     tgatcgaaga gtttgaacgt cggaaggagc gttccggcga aacgtgtgag acgaaggcga       720
     tgaaaagtgt tgttgtgcga aacgaagtgc aaagcgtggg tggactcggc aatagagcac       780
     cagtgagaag atgctacttt tgcgacaagc ccggtcattt gcgtcgcaac tgtcgttcgt       840
     ttatgctagc gaagcaggag ctagagagag aaagcgaaga gaagaagaaa ccggacgaca       900
     gagtgcgtgt gaggcaaaac gcgagacaag cgacggacga aaattgcggt gccagtgtgt       960
     gcttcatggc gggagtggat cagcgaaagt gctggtacat tgacagtgga gcaagtcggc      1020
     acatgacgag cgacaggaac tttttcaagt cgctgaaaga aagaaaaggc ccgagtgtag      1080
     tgttagcgaa tggtaaagtg gttaccgccg ctggttgtgg cgatggtatt gtgcatggcg      1140
     tggacggaaa cggaagcgaa gtggagataa agcttaccga tgtgttgtac gttccgtcgt      1200
     tggcgagtgg acttgtgtca gtggacaggt tgacgaagaa aaagttcaca gtgaagttta      1260
     tgaaggatag ttgtgacatt tgcgatacat ccgggaagaa agttgtgatc ggagaaaagt      1320
     cagggtcgtt gtatcggctg aagctagcga aagttgagaa gaaagtggag ggccagcggc      1380
     cgataatagg cgagaagaag acaacgaagg gaagaagttc accagtcagt gtggtgagct      1440
     ggtattcgga gaagaagccg aatagagccg aagaacgtga agaagaagaa tacttcgatg      1500
     cgaacacttc aagcgaggaa gtggagccgc tgcatgtggc ggagtccaac agtggaagcc      1560
     cagattcgga tgctgataac tggagggaag ttcggcgatc caggaggagc aatcgaggag      1620
     tacgacccag ccggttggta gattacgttt tcgatgcttg aagcaggagg agatcaactc      1680
     ggcatggaag gcagagatga gaaggacgag tacgaggaca acattgagga ggag            1734
//
ID   Copia-116_AA-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-116_AA_;
KW   Ty1_copia_Ele92; Copia-116_AA-I; Copia-116_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-316
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 316 BP; 77 A; 65 C; 86 G; 88 T; 0 other;
     tgttggagta tgcaatgatt gtgcctcgta tgcaaagcgg caacactgaa tgtgtagaat        60
     ttggagaatg aggctgcgac gcatgcgcca gtagggcagg cggcgagagc gccaaataac       120
     agagagaaaa gggagaatga aagaattgca ttcatccgta atgtgatgtt cgatccgtac       180
     agacgtgttt acattaaagt tctcttgcgt acagtagttg agttattagt tgttttcttt       240
     cctaccgaaa tcctggttcc gcgttccgct tcggtgaccc tgttctgcgt tgtggtgtgt       300
     ccacctctgc ccaaca                                                       316
//
ID   Copia-117_AA-I repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-117_AA_;
KW   Copia-117_AA-LTR; Ty1_copia_Ele78; Copia-117_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4375
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1870-2373] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1297..4365
FT                 /product="Copia-117_AA-I_1p"
FT                 /translation="MVCDESIMENSRTVDPITISTAKDGQVMVGRKKGVVK
FT                 LKSVVVKPGKIKKYELYDVLFIPNLQYNLLSVSKLVSAGKMVTFNDNGVVI
FT                 SEKSGEVIASGKKVGGLFVLDLVVDDDDNGNEIACVTMVGSPLDLWHKRLG
FT                 HLGYKNLEKLVSQRMVEGIEFERLSHIQGKRSVCSPCVIGKQNRKPFKTNC
FT                 VRSTRPLEVVHSDVCGPMSERTYDGYRYFVVFIDDFTHFVVVYLLRHKHEV
FT                 LDKFKEYEAMASAHFNFQISRFISDNGGEYYGKKFRRFCTSKGIQMIPTCP
FT                 YTPQQNGVSERMNRTLLDKTRAMLNENDVPKELWGEAVYVSAYLTNRSPTR
FT                 KIKGLKTPFEMWFNIKPKVDGLRIFGCLAYGQIAKERRKKLDDRSKKLTFV
FT                 GYATNGYRLWDNESKRIIVSRDVIFDENKSKFRTTQDPVKVEYQYHKIVTS
FT                 SIPTMPTDASDVSSNDEDDSDEDEVKHDVNDGDVEGNVQNPEITVRRSKRI
FT                 QEKQKQKEEDVQGAFSAVSFVEDIPQTIPQLKNRDDWPLWKAAIQEELEAL
FT                 EANNTWSLVNKVPSGFKPINSMWIFGIKDGESRRYKARLVAKGCSQRYGLD
FT                 YNETFAPVAKMVTIRTILSMAVVKNMLVHQMDVKTAFLNGNLEEEVYMKLP
FT                 YDEDGLSPICRLNRSLYGLKQAGRSWNQCFDDFMRKLNFSRLSSDTCVYVF
FT                 NDYELYVVLYVDDILVVADDITRVNWIKQELAKRFQMKDIGAVKTYIGLEI
FT                 ERNYKTKEMKISQKNYIEKILNRFGMQDCNPVATPMDVNIKWEACEGIRTD
FT                 EPYKALLGCLQYLASMSRPDICAAVSILSRYQNCANCAHWNSLKRILRYLR
FT                 GTKDLYLLYSFHEQARALEGFADADFGNNFEDRRSNSGNLFLVYGNIVSWS
FT                 TKRQPTVSLSSTEAELISLCNGTKEGIWLSNLLREIGIESCPFTIYEDNIP
FT                 CIRIAEEPREHQRTKHIDIKYMFIREVIQSKKLRIQFIKSEDQLADILTKP
FT                 LPRMRFEKMTARLQLQN"
XX
SQ   Sequence 4375 BP; 1405 A; 749 C; 1070 G; 1150 T; 1 other;
     acaggttatg ggcccaggag attaatttaa tcactggtta aatctaggaa ggtagaagta        60
     ccgctagatt gtttttagat tggtggagac ctttagagga ctctaccgga attcacagat       120
     cagtcgaaga gtgatctgga actgtttgaa ttttcatttc agattatgaa aattatcggt       180
     tcatctacaa caatgagcga agtcggacag cggcagcgaa tggtaatgat accaaccttc       240
     cagggagcag tcggtaagga ctatcccttt tggaaggtga gagtaacgca ctaccttaag       300
     caacatggtc ttctgcactg tttggaacgc ataccaccca tggaagagta tgctgacaac       360
     ccagaaggca ccacggcaga ggaagcagcg ctacgaaatg cgcattacga gaagcggctg       420
     aaggaagacg atgaagtggt aaacatcttc tggacatccc tggacaacga cgctatggct       480
     cacgtgctgg agtgtgttta cgccaagcaa atcctggacc gcctggactc ggtgtatctg       540
     cgtcatggga gactggcact attttctatt aggcgcaagc tgtacaatct tcgtacggct       600
     ggctatagat cactaatgga gttgttcttg gcccacgaga ggctcatcca ggagttggaa       660
     cgagcaggtg aagcggtatc ggctagcgaa aaattgaaca ccttgctagt tgccataccg       720
     gatcgtcacc aaagcatttt ggatgcaatt gcggtgatga ggcagggtga cttggcaaca       780
     atgtctctgt ctgaaatccg tagccttttc ctggacgccg aagagaagaa ggaggaacac       840
     cacgagctgg aaccatccaa cgtggcaatg gctgccggca accgaaacat gcccaagaag       900
     aataagaaga gaaagaagga tacgaggacg tgttacgagt gtggcaaacc aggtcacacg       960
     aaacggtact gttwccgtct gttgaacaga gaagtgccgg ggaataggca tgcttctgag      1020
     agggaatatg tcccagcaga acgcgccaac attgccttag ttagtgtttc tgagagggaa      1080
     tatgtcccag cagaaaacaa acgtaaaaag gtcggaattg agtctattga ttctgagaag      1140
     gaaattgttc cagcagaata cagacgggag aaattcgaat ccgagcgtgg tttgattgct      1200
     ggttctgaga gggaacgtgt cccaacagaa cgaaggcata gcaaaccggc ggataggaag      1260
     gtgcgcctca tcgtggattc tggtgctagc gaacacatgg tctgtgacga atcgatcatg      1320
     gagaacagtc ggaccgtgga tcccattacc atttcgacag ccaaagatgg gcaagtgatg      1380
     gtgggaagga agaaaggagt tgtgaaatta aaaagtgttg ttgtaaagcc aggaaaaata      1440
     aagaaatacg aattgtatga tgtgcttttt attcctaatt tacaatataa tctcctatcc      1500
     gtttccaaac ttgtttctgc tggcaaaatg gtgacgttta atgataacgg tgttgtaata      1560
     tccgagaaat ctggtgaagt cattgcgtca gggaagaaag tcggtggttt gtttgttctc      1620
     gacctggtag ttgatgatga cgataatggt aatgagattg cttgcgttac aatggttgga      1680
     agtccactcg atctttggca caaaagacta gggcacctag ggtacaaaaa tctagagaaa      1740
     ttagtttccc agcgaatggt tgaaggtata gaattcgaaa ggctttcaca tattcagggg      1800
     aagcgtagcg tatgttctcc ttgtgttata ggtaagcaaa atagaaaacc tttcaaaacc      1860
     aattgtgttc gatcgactag accgttggaa gtcgtgcatt ctgatgtgtg tggaccaatg      1920
     agcgaaagaa catacgatgg ttatagatat tttgtagtgt tcattgatga ttttactcat      1980
     tttgttgttg tttatctgtt acgtcataag catgaggtgc tggacaaatt taaggaatat      2040
     gaagcaatgg cttcagctca ctttaatttc caaatctcta ggtttatttc agataatggt      2100
     ggagagtatt atgggaagaa attccgaaga ttttgtacaa gtaaaggaat tcaaatgatt      2160
     ccaacttgtc catatactcc gcagcaaaat ggggtgagtg aaagaatgaa tcgcactcta      2220
     ttagataaaa caagagcaat gcttaatgaa aacgatgtac ctaaagaact atggggagag      2280
     gcagtatacg tgtctgccta tttaaccaat cgttccccaa ctcgaaagat aaaaggtttg      2340
     aaaactccat tcgaaatgtg gtttaacatc aaaccaaaag tcgatggatt acgtatcttt      2400
     ggttgcttgg cctatgggca gatagcgaaa gaaagacgta agaaattaga tgatagaagt      2460
     aagaagttaa cttttgtagg gtatgccacg aatggatatc gattgtggga taatgaatct      2520
     aaaaggataa ttgtctcacg cgatgtaatt ttcgatgaaa ataaatcgaa atttcgcact      2580
     acccaagatc ctgttaaggt ggagtaccaa tatcacaaga ttgtgacgtc atcaattcca      2640
     acaatgccca ctgatgcttc agacgtgagt tcaaacgatg aagatgatag tgacgaagat      2700
     gaagtcaagc atgatgtcaa cgacggcgat gtcgaaggca atgtgcaaaa tcccgaaatt      2760
     actgtacgcc gcagcaagag aatccaggag aaacaaaagc agaaagaaga agacgtgcag      2820
     ggtgcgtttt cagcagtaag tttcgttgaa gacattcctc agacaatacc gcaactcaaa      2880
     aacagagatg attggcctct atggaaagct gcaattcagg aggaactaga ggcattagaa      2940
     gcgaacaata cgtggagttt ggtaaacaag gtcccatctg gattcaagcc gatcaattcc      3000
     atgtggatat tcggaatcaa agatggagaa tccagacgat ataaggcaag acttgttgct      3060
     aaaggatgtt cccaaagata tggtttggat tacaatgaaa cctttgctcc tgtggctaag      3120
     atggtaacta ttagaactat tctttctatg gctgtagtta aaaatatgct cgtacatcaa      3180
     atggatgtaa agacagcctt tctcaatgga aatttggaag aagaagttta tatgaagtta      3240
     ccatatgacg aagatggact aagtccaatt tgtcgtttga acagaagtct ttatgggctg      3300
     aagcaagctg gaagaagctg gaatcagtgc ttcgacgatt tcatgagaaa gctgaacttt      3360
     tctaggttat ccagcgatac ttgtgtttat gtattcaatg attatgaatt gtatgtcgtg      3420
     ctttatgtgg atgatatcct agttgtagca gacgatatta caagagttaa ctggataaag      3480
     caagaattag ctaaaagatt tcaaatgaag gatattggag cagttaagac ctatattggg      3540
     ttagaaatag aaaggaatta taagacaaaa gaaatgaaaa tttctcagaa aaattatatt      3600
     gagaaaattc ttaatcgttt cggtatgcaa gactgtaacc ctgttgctac accaatggat      3660
     gtcaacatta aatgggaagc gtgtgaaggc attagaacgg atgaaccgta taaagcttta      3720
     ttgggttgtt tacagtactt agcttcaatg tctcgtcctg atatttgcgc tgctgtaagt      3780
     atcctcagta gataccaaaa ttgtgcaaat tgtgcacatt ggaatagttt gaaaagaatc      3840
     ttacggtact tacgaggtac aaaggatcta tatcttttat atagttttca cgaacaagca      3900
     agagctttag aaggatttgc agatgctgac ttcgggaata attttgaaga tagaagatca      3960
     aattctggaa atctgtttct ggtctatgga aatatagttt cttggtctac aaagagacag      4020
     cctacagtaa gcctttcgtc aacagaggct gaactgattt ctctttgtaa tgggacgaag      4080
     gaaggaattt ggttatcaaa tttattgcgt gagattggaa ttgaatcatg tcctttcaca      4140
     atttatgaag ataacatccc ttgcattcga attgctgaag aaccaagaga acaccagaga      4200
     acgaagcaca tcgatattaa atatatgttc atccgagaag tcatccagtc caagaagttg      4260
     aggatccagt ttatcaagag tgaagatcaa ctagcagata tcctcacgaa gccattacca      4320
     aggatgaggt tcgagaagat gacagcgaga ctacaattgc aaaattgagg ggaag           4375
//
ID   Copia-117_AA-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-117_AA_;
KW   Ty1_copia_Ele78; Copia-117_AA-I; Copia-117_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-316
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 316 BP; 99 A; 50 C; 62 G; 105 T; 0 other;
     tgttgaaata tcaatttctg caccggtcta atctagatgc tgataatgga ccactatgga        60
     caaaagattg tatgccaacc ggctggacaa tagtttcgct ttgccgttcg tctattgtac       120
     acacatgaca tgcataaacg aaagagcgtg gataggtttg gagtttgtga taatttgtat       180
     atatagtttt atctatcgct atcactccat gtattgtaaa tatgataccg accaaattga       240
     attgaataaa ttgtcttttg gatatcgatc tgaagaatac gttaataagg tatattgaga       300
     ttgatgtcaa acctca                                                       316
//
ID   Copia-118_AA-I repbase;    DNA;    INV; 3918 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-118_AA_;
KW   Copia-118_AA-LTR; Ty1_copia_Ele28; Copia-118_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3918
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1359-1862] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..1135
FT                 /product="Copia-118_AA-I_1p"
FT                 /translation="MGDHRKEAAVHGIQQFVGKGYDVWQFRVQTYLESVNV
FT                 WDAIVKDVPVTAAEAAKFHETDRKAKAILVGFVADEYLGCIRDKGTAKAMW
FT                 KSLEDTFAKKSAGRQTLIRKQIARLHLKDGASVRTHLLEFEDLIRQLRMAG
FT                 SKLEESDVCSSLALTLPESYDALVTALENLPENELTYEVMKTRLIDEESKR
FT                 NDRSYTVEDKPAAFIGDNQKKGNRFNGKCHSCGKRGHMKKDCKKAKGNANV
FT                 ASIFKPVVFMADRAVTKRDSVGKIVFKLDSGSSDHLVNKKTYFKSVKSVQS
FT                 PIIINVAKDGQFLEAKQVGEISGSSNLGVPLTCEGRFVRAKSTGQFDVSKE
FT                 IGKSRSRSGVQQQGGNVEAKRENHCDGLSARQLV"
FT   CDS           join(1020..2156,2160..3062)
FT                 /product="Copia-118_AA-I_2p"
FT                 /translation="MSVKKLAKAGVEVAFNSKVATLKLNGKTIATAYLRGN
FT                 LYEHEIEVPEKEANLCSSETANLWHRRLGHLSENSMKMMVREDLAKGLNFK
FT                 PQKLQFCEACVQGKMCREPFDGKRERATRPLGRIHSDVCGPIEPASWDGHR
FT                 YFVSFIDDYSHFAMVFLLKKKSQVFEKFQEYEAMVTAMFGASISKLTVDQG
FT                 REYCSGNQMKFYKAKGIQIEATVAYSPQQNGVAERFNRTLVEKVRSMLIDS
FT                 RMPKSMWGEAVLTGTFLMNRSPTSALPRNLTPTECWTKQKPNLEKLKVFGS
FT                 QAFAWIPNQYRKKLDAKSRELVMIGYASNGYRLWDRNSRKIVIARDVKFNE
FT                 ACYPYASNSSKSEDIPLMILTSSDQEGESKNYLVSGENEARNSVEMIEAED
FT                 SEYDDELPTALPSQQERDSNSDESSTRRSERERKFPGKLLEYLTGFEATAV
FT                 GSPQFTDIPQCFNDIAKSDDRDHWMEAVLDELKSMEANRVWQLMKRPPGVK
FT                 PLKSKWVFRLKENECGQAIRHKARLVVKGFLQRPGIDYEETFAPVARLATV
FT                 RVVLAVAVRYGFYLHQMDVKTAFLHGNLKEELYMEVPDGVQAAPGTVCKLL
FT                 KSIYGLKQSPRCWNEKLNTVLLKLGFSRSKRDYCLYTSTKENDEIFLVLYV
FT                 DDLLIIGRNIRTIEHLKQQLSREFKMSDCGE"
XX
SQ   Sequence 3918 BP; 1187 A; 761 C; 1026 G; 937 T; 7 other;
     ggttatgggc gaccaccgta aagaagctgc ggttcacgga attcagcaat tcgttggtaa        60
     aggttacgat gtatggcaat tccgtgttca gacctatttg gagtcggtga acgtatggga       120
     cgctatcgta aaggatgtac ccgttacggc tgcggaagcg gcaaagttcc acgagacgga       180
     caggaaggcc aaagcgattt tggtgggctt cgtagcagac gagtacctag gctgcattcg       240
     ggacaagggc acagcaaaag caatgtggaa aagtctcgag gatacattcg cgaagaaatc       300
     agcaggtagg cagaccctaa tcaggaagca aattgcaaga ttgcacctga aagatggcgc       360
     ctcggttcgg actcatctgc tggagtttga agatctgatt cgtcagttac gcatggcggg       420
     atcgaagttg gaagaaagcg atgtttgctc gtctctggcg ttaacgcttc cggaatcata       480
     cgacgctctg gtgacggctt tagagaattt gccggagaac gaacttacct acgaagtgat       540
     gaagacccgt ttgatcgatg aagaatcgaa acgaaacgat cgaagctata ctgtagaaga       600
     caaaccagca gcgttcattg gcgataacca gaagaaaggc aaccggttca atggaaaatg       660
     tcattcctgc ggaaaaagag ggcatatgaa gaaagattgc aagaaagcaa aaggaaatgc       720
     aaatgtggca agtattttta aaccagtggt gttcatggcg gaccgtgcag ttactaagcg       780
     agacagcgtc gggaagatcg tgttcaagtt ggactctgga tcgagtgacc atctcgtgaa       840
     caagaaaacg tatttcaaat ccgtcaaatc agtacaatcg ccaattatca tcaacgtagc       900
     taaggatggc caatttcttg aagccaagca ggtaggagag atctcaggat caagtaatct       960
     tggagttccg ttgacatgtg aaggacgttt tgtacgtgcc aagtctacgg gacaatttga      1020
     tgtcagtaaa gaaattggca aaagcaggag tcgaagtggc gttcaacagc aaggtggcaa      1080
     cgttgaagct aaacgggaaa accattgcga cggcctatct gcgaggcaac ttgtatgaac      1140
     atgaaattga agtcccggag aaagaagcga atttgtgcag ttcagagaca gcaaatctgt      1200
     ggcatagacg actaggtcat ctgtctgaga atagtatgaa gatgatggtg cgggaagatt      1260
     tagccaaagg actgaacttt aagcctcaga agctccaatt ttgtgaagct tgtgttcaag      1320
     gtaagatgtg tcgagaacca tttgatggaa agcgcgaaag agcaacgaga ccactcggaa      1380
     gaatccattc tgatgtctgt ggacctatag agcccgcgtc atgggatggt caccgttatt      1440
     ttgtcagctt tatcgacgac tattcacact tcgcgatggt gttcctactg aagaaaaagt      1500
     ctcaagtttt tgaaaaattt caagagtacg aagcgatggt aacagctatg tttggagcat      1560
     cgatatcgaa gttgacagta gatcaaggtc gagaatattg ctccggaaat cagatgaaat      1620
     tctacaaggc taaaggtatt caaatagaag cgaccgttgc atattcccct caacaaaacg      1680
     gggtagcgga gcggttcaac cgaaccctag tggagaaagt tcgaagcatg cttattgact      1740
     cgaggatgcc taaatcgatg tggggagaag cagttctaac aggtacgttt ttgatgaata      1800
     ggagtcccac ttctgctctc ccgaggaatc ttaccccgac ggaatgctgg accaaacaga      1860
     agccgaactt ggagaaactg aaagtttttg gttctcaagc atttgcatgg atccccaacc      1920
     aatatcgcaa gaagttagat gcgaagagtc gagaactggt gatgatcgga tacgcttcaa      1980
     atggatatcg cttatgggac aggaattctc ggaaaatcgt aattgctcga gatgtgaagt      2040
     ttaatgaagc ttgttatccg tatgcgtcca atagtagcaa atctgaagat attcctttga      2100
     tgatcttgac atcgtccgat caagaggggg aaagcaagaa ttacctcgta tctggagwag      2160
     aaaacgaagc gcgaaattcc gttgaaatga ttgaagctga agatagcgaa tacgatgatg      2220
     aactacccac cgcgctccct tcgcaacaag aacgggacag caattcagat gaatcgtcca      2280
     cgaggcgtag cgaacgggag cgcaagtttc cgggtaagtt gctggaatat ttaactggtt      2340
     ttgaagcaac tgctgttggc tctccacaat tcacagatat acctcagtgt ttcaatgata      2400
     tcgcaaagag tgatgaccgt gaccattgga tggaggctgt actcgacgag ctcaaatcga      2460
     tggaggccaa tcgtgtgtgg caactgatga aacgaccacc aggtgttaag cccttgaaat      2520
     ccaaatgggt attccgattg aaggaaaacg aatgtggaca agcaattcga cacaaagcaa      2580
     ggttagtggt gaaaggattt ctgcaacgtc ctggmatcga ttatgaagaa acgtttgctc      2640
     ctgtggctcg cttggcaaca gtacgtgtgg tgctcgctgt ggccgtacga tatggtttct      2700
     atctacacca aatggatgtg aagacggcct ttctccatgg caacctgaag gaagagctgt      2760
     acatggaggt accggatgga gtgcaggcag cgccaggaac agtatgcaag ctactgaagt      2820
     ctatttacgg gctgaaacag tctccacgat gttggaatga aaaactcaat acggtgttgc      2880
     tgaagctagg tttttcaaga tcgaaaagag attattgctt gtacacttca acaaaagaga      2940
     acgacgaaat ctttctggtg ctgtatgtag acgatttact tatcattggc agaaacattc      3000
     gaaccattga acacctgaag caacaactgt cccgtgagtt caaaatgtcs gattgcggcg      3060
     aggmaaagtt cttccttggc attaaattgg attacgatcg tcagagaggt atcctwmagt      3120
     tgtcccaagg aagcaatgcg caaaaaatcc tgaagaaatt cggcatgata gattgcaacg      3180
     cagtgaamac gcctatggaa aaaggattac agttgagtcg agccggaagc agaacgaatg      3240
     aaccctacag agaacttcta ggcagtttaa tgtaccagat gctatgtgct agacctgata      3300
     tttgttttac tgtaagttac cttggacgtt accaacagaa tccggtggat catcattggc      3360
     aggccttgaa gcgcgttgtg agatacctga aaggcactag cgagcttggt ttgctctaca      3420
     agcggaatga atcttcagct ccgttgattg gctttgtgga ctcagattgg gcatcagatc      3480
     aagaagatcg aaaatccgta tctggctttg tcttcaaggt gttcggatca accgtatcgt      3540
     gggcaagtag aaaacaagta accgtatcta cttcatctag tgaagcagaa tacgttgctc      3600
     tcagctctgc agtaagtgaa gcgatttggt tgggcggtct cctggaagat ttgaaatgca      3660
     aatcaaaggc agaagcaatt ccaatatttg aagataatcg tggctgtatt ggactggcaa      3720
     gaaacatgga atcaaaaaga atcaagcaca tcgatatcaa acatcatttt ctgagggacc      3780
     atgttgctgc tggaaccgtg acgattgagc ctattggaac tgcagatcaa gaagccgaca      3840
     tcttcacgaa atcattggat actgtacgat tccaagatct acgttcaaga ctgggagtca      3900
     ccgattgaga gggggtgt                                                    3918
//
ID   Copia-118_AA-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-118_AA_;
KW   Copia-118_AA-I; Copia-118_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-219
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 219 BP; 58 A; 58 C; 35 G; 68 T; 0 other;
     tgaaaaacga agcaatcgtg aaccctatct caacaaccct gctacgtccc tgacaaccgt        60
     atcctggagt aggttggacc tagcaactaa gggttgttac acttttttct tattcctgtt       120
     tcaaccacca atcgcatcag acgtgtgttt caataaacgt tattgttcct gttacattcg       180
     tatcttgttc ttcgcctcca aagttctgca acatcaaca                              219
//
ID   Copia-119_AA-I repbase;    DNA;    INV; 4113 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-119_AA_;
KW   Copia-119_AA-LTR; Ty1_copia_Ele34; Copia-119_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4113
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1551-2075] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1353..4103
FT                 /product="Copia-119_AA-I_1p"
FT                 /translation="MAEGAMAASESVHKVDCQHQWHRRLGHRDWAAAERII
FT                 KEELATGIGVSDCGQRVVCECCMEGKSARLPFPPVVDRKSSRVLDIVHTDL
FT                 CGPMDIVTPSENRYVMTITDDYSRFAVTYLLKQKNEAAGNIKDYVRWVSNI
FT                 FGRKPRVVRSDGGGEFDNRELRAFYKSEGIQPQFTTPYPPQQNGVAERKNR
FT                 SLIEMATCMLIDAGLEKRYWGEAMLTATYLQNRLPSRSIQTTPYQMWWNRK
FT                 PDLSHLRVFGSQAYVHVPDTRRKKLDSKATKLTFVGYAMEQKGYRFVDLET
FT                 DQVTISRDARFIELENGTSSVEVTIPRSKKPEEEIKLLPLKEKKEEKDDPF
FT                 EESISAPEDLIETDDGDEVGEPVASSTVRRSERSNRGALPKHFDVYELDYV
FT                 AGIAACAVEEPVGVKEALADPVWRKAMEEELEAHRINGTWQLVKLPEGRKV
FT                 IGSRWVYKTKKNEENRVVKFKARLVAQGYAQRYGVDVGEVFAPVTTQATFR
FT                 TFLTVAAKHNMIVQHLDIKTAYLHGTLEEEVYMRQPPGYVKAGNEELVCRL
FT                 QRSIYGLRQSARCWNKRLHEVLVKNGFKAAVADPCLYIRGAGKTKVLLLVY
FT                 VDDLLLASTNATELKIIQEQLNAEFELTNLGEVRHFLGVEVRREGTVFKIG
FT                 LRNYIDGLLQAHGMNEAKPAKSPMDPGYLKLTDSGKSFDDPTSYRSLVGGL
FT                 LYLAVVARPDIAASAAILGRRFSAPREIDWTAAKRVLRFLKKTRSYQLQLG
FT                 GAVDQPLVGFSDADWAGDAESRRSTSGMVFQFGGGTISWASRRQSSVTLSS
FT                 MEAEYVALSASCQEALWLRQLLHDFGEDQDEPTVIMEDNQGCLAFVRSERT
FT                 SRRSKHIDTRERFVQDLCAKKMIQLQYCSTDRMTADIMTKPLGPLKHQEFC
FT                 ELLGLKFAAEIPH"
XX
SQ   Sequence 4113 BP; 1063 A; 944 C; 1223 G; 881 T; 2 other;
     ggttatgggc ccaggttgga acggattcga tctcgggaag attcgatcgg gaaaaatcga        60
     atggcgtgtt tcgctgaccc gtggcgtcag tgaggtgaac tgcgaaggac aatagtggac       120
     aatagtgccg gtcgttgacc gattgaaaag aacagtgatt tgtgagttct gtgaatatgg       180
     gcgacgctaa attcgccatt cccaagttga acggtgccaa ctggcactct tggaaggtgc       240
     gggttgagat gctgctagcc cgcgaagatt tgtggcatgt tgtcgaggac gacatccctg       300
     cggaagaaga aatgagtgag cagtggaaaa gtgaagatcg caaagcgaga tcgactatca       360
     ttctccttct ggaggatggg caactctcga aagtgcgaaa ttgtgtgcac gcgaaagacg       420
     catacaatgc gctcagaaac caccatcaga agacgacccg ctcggtacgt gtatcgctcc       480
     tgaagaagat mtgttccacc aatctgtcgg ataacggtga tgtcgaaaaa catcttcaag       540
     agtttgacgg cattttcgaa cgcctggacg gtgccgggat gaggctggat aaagatacga       600
     agatctgtat gcttcttcgt agtcttcctg cctgcttcga cggtttgatt acggcgctcg       660
     atagccgtac agacgacgat atttcgctag aggtagtgaa atcgaagctg gtggacgaat       720
     ataatcgaca attggaacgg aaaggtggct ctaccagagt agagcgagcg atgcggtcgg       780
     atgtgcggta tagtgatggc agacctgaaa aggatacccg tacttgccat tactgcaaga       840
     agacaggaca cattaaacga aactgtcgga agtttttgtc gacgcagaaa aaggacggga       900
     attcttcccg ccaagattcg gacagttatc cgaaggcaaa gacagcgcac ggtgacgtca       960
     gaggagtggc gtttacggtt ggtggtgaaa gttcttcgag ttgggtgatt gacagtggtg      1020
     ccagctcgca catgtccaac gacaaggmtt tcttcgggtc gttgcgtgaa ttttctggag      1080
     gatccatcac gctggccgac ggccagaaga ccaaaattgc gggtgaaggt tctggtgtga      1140
     tccacggtgt cgacggttcc ggaaaagtgg caagaattga agtgaacaat gcgaagtatg      1200
     tgcctggact atccacgaac ttgatcagtg ttacaaaatt ggccgagaag aacttccgtg      1260
     tgaactttga tgtgaatggc tgtactatta tcgatgcgga agacgttgtg gtggccaccg      1320
     gaagtcgaca cggtggatta tactacctgc gaatggcgga gggcgctatg gctgcttcgg      1380
     aatcagtgca caaagtggat tgccaacacc agtggcaccg gcggctcggt catcgagatt      1440
     gggcggctgc tgagcgaatt attaaggaag aactggctac tggaatcgga gtgagtgatt      1500
     gtggacagcg tgtggtttgc gaatgctgca tggagggcaa gtcagcgagg ctcccatttc      1560
     ctccggtcgt agatcgcaaa tcgtctcgtg tgttggacat tgtccacact gatttatgtg      1620
     gtccgatgga catcgttaca ccaagcgaaa atcggtatgt gatgacgatc accgatgact      1680
     acagccggtt cgcggttacg tacctgctaa agcaaaagaa cgaggcagca ggcaacatca      1740
     aggactatgt gcgctgggtg agcaatattt ttgggcgcaa accccgcgtt gtgcgctccg      1800
     atggaggggg agaatttgac aaccgtgaac tccgagcgtt ctacaaatcg gagggaattc      1860
     aaccccagtt tacgacccct tacccccctc aacaaaacgg cgtcgccgaa cgtaaaaatc      1920
     gttccctgat agaaatggcg acgtgcatgc tgatagacgc gggtttggag aagcgctact      1980
     ggggcgaagc gatgctcacc gccacttatc tccaaaatag gctgccttcc agatcgatcc      2040
     agacaacacc ataccagatg tggtggaacc ggaagccgga cttaagtcat cttcgggttt      2100
     tcgggagcca ggcgtacgtg cacgtgccgg acacgaggcg taagaagcta gacagtaaag      2160
     cgaccaagtt aacgttcgtc gggtacgcca tggagcagaa aggctaccga ttcgtcgatc      2220
     tcgagacgga tcaggtgacc atcagccgtg atgcccgttt catcgagctg gagaacggaa      2280
     cgtcgtccgt ggaagttacg atcccaagaa gcaagaagcc agaagaagaa attaagttgt      2340
     tgccgctgaa ggagaagaag gaagaaaagg acgatccgtt tgaggagagc atttccgctc      2400
     cggaagattt gatcgagact gacgatggtg atgaagttgg cgaacctgtt gcgagttcga      2460
     ctgtccgtag atcggaacgg tcaaatcggg gtgcactacc gaagcatttc gacgtttacg      2520
     agctggacta cgttgcaggc attgcagcgt gtgcagtaga agaaccggtc ggtgtgaagg      2580
     aagctctagc ggatccggtg tggcgcaaag ccatggaaga agaattggaa gctcatcgta      2640
     tcaacggaac atggcagttg gtgaagttgc ccgaaggaag gaaggtcatc ggatcgaggt      2700
     gggtctacaa aacgaagaaa aacgaagaaa accgtgtagt gaaattcaag gccagattag      2760
     tagcccaagg ctacgcgcaa cgatacggag tcgatgtagg tgaagtgttt gcccctgtta      2820
     ctactcaagc aacattccgt acgttcctga cggtggcggc aaaacacaac atgatcgttc      2880
     agcatcttga catcaagacg gcctacctgc atgggacgct cgaggaggag gtctacatgc      2940
     gtcaaccccc aggatacgtg aaggccggaa acgaggagtt ggtgtgcagg ctccagcgca      3000
     gcatctacgg cttgcgtcag tccgctcgct gctggaacaa gcgcctgcat gaagtgctcg      3060
     tgaaaaacgg attcaaggcc gcagtcgcag atccctgcct ctacattcgc ggcgccggca      3120
     agacaaaagt cctgttgctg gtgtacgtag acgatctgct cctggcttca acgaatgcga      3180
     ccgaactcaa gataatccag gagcaactga atgcggagtt cgagctaacc aacctcgggg      3240
     aagtgcgaca tttccttggt gttgaagtac gacgtgaagg cacagtgttt aagattggtt      3300
     tacgcaacta catcgacgga ttgctgcagg cgcacggaat gaacgaggcg aagcccgcca      3360
     aatcaccaat ggatcccggg tatctgaaac tgaccgattc tggaaaatca ttcgacgatc      3420
     cgacgagcta ccgcagtctt gtgggtggct tgctctacct ggccgttgtt gcaagaccgg      3480
     atatcgcagc gtccgctgca attttgggaa gaaggttcag tgcaccgaga gaaatcgatt      3540
     ggacggcagc gaagcgcgta ctgcgcttcc tgaagaagac ccgaagttac cagttgcagt      3600
     tgggaggagc tgttgatcaa ccgctagtcg gattctccga cgccgattgg gctggtgatg      3660
     ccgaaagtcg ccgctctact tccggaatgg tgttccagtt tggaggcggc acaatttcgt      3720
     gggcgagtcg tcgccaatcg tccgtcaccc tttcatccat ggaggctgaa tacgtcgcac      3780
     tcagcgcttc gtgccaagaa gcgctgtggc tgcgacagct actccacgac ttcggcgaag      3840
     atcaagatga accaacagtt ataatggagg acaaccaggg gtgcttggcg tttgtacgat      3900
     cggaacggac cagccgtcgc tccaagcaca ttgacacccg tgagcgattc gtacaggact      3960
     tgtgtgcgaa gaagatgatc cagctccagt attgctcgac cgatcgtatg accgctgaca      4020
     tcatgaccaa gccccttggt ccgctaaagc atcaggagtt ctgcgagctt ctaggactga      4080
     agtttgctgc agagattccg cattgagggg gag                                   4113
//
ID   Copia-119_AA-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-119_AA_;
KW   Ty1_copia_Ele34; Copia-119_AA-I; Copia-119_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-314
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 314 BP; 70 A; 85 C; 57 G; 99 T; 3 other;
     tgttggacgg tgcaatgcgt acctctgcca tccgaacctt gcgctgttac acacctagat        60
     ctacctatgc gtatctgccg tacgcacaca aacacttttt atattaacac tcactgacag       120
     ttcgcaacat attttagtct wtgaaacgta cgcgtccgwa gtaccacgta tttcttattt       180
     ttaaccgctt tkaataaagt ttctgtgttg atcgtattcc gcgagttcaa atagtttccc       240
     ccgggaatag atcgtttccg aaattccgca cacgtcgtgt ttttccactg gcctccggac       300
     tttgcctgcc gtca                                                         314
//
ID   Copia-11_AA-I repbase;    DNA;    INV; 4146 BP.
XX
AC   supercont1.46;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_AA_;
KW   Copia-11_AA-LTR; Copia-11_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.46; Positions 2094762 2090617.
XX
CC   Positions [1474-2001] - Integrase core
CC   'AGGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4122
FT                 /product="Copia-11_AA-I_1p"
FT                 /translation="MEALNKFVRLNNHNWQTWKFRMEMLLTREDLWYVVET
FT                 PKPDENAIQWEKDDKKARATMGLCIEENQYGLIKSAATATQFWNNLKAYHE
FT                 KVTVTSRVSLLKRLCSLNLLEGGDLESHLFEIEDLFDRLTQAGQELNDSLK
FT                 VAMILRSLPDSYSGLVTALESRPDADLTVVLVKSKLLDEFERRKERSVPGS
FT                 SGRSGELKALKSFGKRNMSVSDRVCFFCKQKGHLRNDCAVLQEQQKRKSER
FT                 KKKKNEPSAAKQAVTENKSAVLFLVNGIRSSGWIIDSGASVHMSNDKRFFE
FT                 SIDETDVHDVILADGRSVKSVGCGTVKMSGVNGFGGAVDVILEKVLYVPSL
FT                 NSGLLSVTKLTSKGFLVVFREDDCDITDASGKVVAKGDRCGSLYQLRMAEE
FT                 ALKVEKMHHNESCQHQWHRKLGHRDPAVVGQLCSKKLAEGVVVKDCGIRIA
FT                 CETCMEGKLSRAPIPHQAERKSTQVLDLVHTDLCGPTKTPTPSGSRYLMTV
FT                 IDDFSRYTVVYLLQKKSEAVDRLIEYVRYVETLFNRKPRMVRSDGGGEYVN
FT                 ERLQNFFKSEGIKCQYTTAYTPQQNGVAERRNRYLQEMATTMLLDAKLEKK
FT                 YWGEAVVTAAYLQNRLPSRAVDVTPFELWYGRKPNLEHLRVYGCKAWVHIP
FT                 DVKRGKFDSKARKLTFIGYSEQHKAYRFVDLATEKVTISRDARFLEMDEAQ
FT                 RQEEVTVLQAPDENYTEFVPCNVPSTSKQFLVEAPVKETVEPDRCERLGDL
FT                 QDDDEVHSEHEQFFDISSSSLEDPLAVKDEPLDSEEAEPDPREQATGKLPR
FT                 RNRGKLPDRFSDYVVGVATQQAKEPVTFDEAVKSSNSDAWRKAMDEEFQSH
FT                 LRNGTWELVNPPAGKRVIGSRWVYKIKQDETGAVVRFKARLVAQGYAQRYG
FT                 VDFDEVFAPVTKYATLRVLLVLAGKDRLCLKHLDVKTAYLYGSIEEEVYMR
FT                 QPVGYEVRGQEEKVCRLRRSIYGLKQSARCWNRKLSDVLLKFGFVACNADP
FT                 CMYVASRNGRKVFLIVYVDDLLVGCSSEEEVAKVYEELRKEFEICWLGDAK
FT                 YFLGLELQKEDDGFYSMSVKAYIEKLIGKLGLQDAKVARTPMDQGYVKDKT
FT                 ASENLKDVSQYRSVVGAVMYIAVTARPDIAAAASILGRKFSAPTEIDWTTA
FT                 KRVVRYLKATKDWKLKLGCEGGKLLEAYSDSDWAGDPDTRKSTTGFVIFYA
FT                 GGAVSWASRRQDCVSLSSMEAEYVALGETCQDVLWLRRLLSDIGENQECAT
FT                 TVHEDNQGCLCFVRSERTSKRTKHIETKESFIKDLCDRGIVKLQYCPTDEM
FT                 KADILTKALGNIKHDRFTELLGFVKG"
XX
SQ   Sequence 4146 BP; 1124 A; 802 C; 1240 G; 980 T; 0 other;
     ggttatcggc ccagtcgatg tgtcgtgaaa aatagtggat agagtcggaa aatcggttga        60
     taaagtgccg tcgcgtgtgt tgttttgtcc cagcagatta gagcaacaat ggaggcactc       120
     aataagtttg tccggttgaa taaccacaac tggcaaactt ggaagttccg tatggagatg       180
     ctccttacga gagaggattt atggtacgtc gtggaaactc cgaagccgga cgaaaatgct       240
     atccagtggg agaaggacga taagaaggcc cgagcgacta tgggactctg tatagaggag       300
     aaccaatacg gtttgataaa atcggctgcg actgctacac agttttggaa taacctcaag       360
     gcgtaccacg aaaaggttac agttacttcc agagtgtcct tactgaagag gttgtgtagc       420
     ctaaatctgc tggaaggtgg cgatctcgag agccatctgt tcgagataga ggatcttttc       480
     gatagattga cgcaagctgg gcaggagctg aatgattctc tcaaagttgc aatgatattg       540
     cgaagcctgc cggattctta ttccggactt gttactgcgc tcgaaagcag accggatgca       600
     gatctaacgg tagtgttagt taagtccaag cttctcgacg aattcgaacg tcgaaaggag       660
     cgttctgtac ctggttccag tggacgttct ggtgaattga aggcgctgaa aagtttcggc       720
     aagcggaata tgtccgtttc ggatcgtgtg tgcttctttt gtaaacagaa gggacacttg       780
     agaaatgact gtgcagtgct gcaggagcag cagaagcgta aaagtgaaag gaagaagaag       840
     aagaatgagc catcggccgc taagcaggct gtgaccgaga acaaaagtgc tgtgttgttc       900
     cttgtgaatg gaattcggtc tagtggttgg attatagaca gtggtgcaag cgttcacatg       960
     tcaaacgaca agcgattttt cgagtcgatt gatgaaacag atgtgcatga cgtgattctg      1020
     gctgatggaa ggtccgttaa gtcagtcgga tgtggaactg tgaagatgtc tggagtgaac      1080
     ggcttcggtg gtgcggtcga tgtaatcctg gagaaggttt tgtacgttcc atcgctaaac      1140
     agtgggttgt tgtctgtgac aaagctgacg tcgaagggat ttctggtcgt gttccgtgag      1200
     gatgattgcg atatcacgga tgcctccggc aaggtagtag ctaagggcga tcgctgtggc      1260
     agtttgtatc agctgagaat ggccgaagaa gcgctgaagg tagagaagat gcatcataac      1320
     gaatcctgtc aacatcagtg gcaccgtaaa cttggccaca gagacccggc agttgtgggc      1380
     caactgtgct cgaagaagct tgctgaagga gtggtagtga aggattgcgg aattcggatt      1440
     gcttgcgaga cctgtatgga aggaaagtta tctcgtgctc cgattccaca ccaggctgag      1500
     cggaagtcaa cccaagtgct cgacctggta cacacagacc tttgtggtcc gacgaaaacg      1560
     cctacaccga gtgggagcag gtacctaatg acggtgattg atgattttag tcggtacact      1620
     gtagtctact tgctgcagaa gaagtcggaa gctgttgatc gtttgattga atacgtcagg      1680
     tatgtggaga cattatttaa tcgtaaacct cgtatggtac gctcggacgg tggcggcgaa      1740
     tacgtcaatg aacgactgca gaatttcttc aaaagtgagg gaataaagtg ccagtacact      1800
     acagcctaca cgccccagca gaatggtgtc gctgaaagac gaaatcgcta cctgcaagag      1860
     atggcgacaa cgatgctgct ggatgcaaag ctcgagaaga agtactgggg tgaagcagtc      1920
     gttacggcag cgtacctcca aaatcgactg ccttccaggg ctgttgacgt tactccgttc      1980
     gagttgtggt acggtaggaa gccaaacctg gaacatttgc gagtgtatgg ctgcaaggcg      2040
     tgggtacata tacctgatgt caagcgaggc aaattcgaca gcaaggcacg aaagctgacc      2100
     ttcatcggct actccgaaca gcacaaagca taccgttttg ttgatttggc tacggaaaag      2160
     gttaccatca gcagggatgc caggttcctg gaaatggatg aagctcaacg acaagaggag      2220
     gttactgtgc tccaggctcc tgatgagaat tatacggaat ttgttccgtg taacgtacca      2280
     agcacaagta agcaattttt ggtggaagcg cctgtgaaag aaacggtgga acctgatcgg      2340
     tgtgagcgtt tgggtgatct tcaggatgac gacgaagtgc atagtgaaca tgagcagttt      2400
     ttcgacatta gttcttcatc tttggaggat ccgttagcag tgaaagacga gccacttgat      2460
     agtgaagaag cggaaccaga tccacgtgaa caagctacag gcaagctgcc ccgtaggaat      2520
     cgtgggaagt taccggatcg tttttcggac tacgtcgtag gcgtagcaac gcagcaagcg      2580
     aaagagccag ttaccttcga tgaggcagta aaaagcagca atagcgatgc ttggcgaaaa      2640
     gcgatggatg aagaatttca gtcgcatttg cggaatggta cgtgggagct tgtgaatcct      2700
     ccggctggaa agcgcgtcat tggtagccga tgggtttaca agatcaagca ggacgaaaca      2760
     ggagcagttg ttcgattcaa ggctcgactg gtggcgcaag gatacgcgca gcgatacgga      2820
     gtcgattttg acgaagtgtt cgcccctgtc accaagtatg caaccttgag agtattgctt      2880
     gtgctggcgg gcaaagatcg tttgtgtttg aagcatctgg acgtcaaaac tgcctatctt      2940
     tacggtagta ttgaagagga ggtgtacatg cgtcagccgg ttggttatga agttcgcgga      3000
     caagaggaga aggtttgtcg tttgaggcgc agcatatacg gcctgaaaca atcggcaagg      3060
     tgctggaacc ggaaattatc ggacgtccta ctaaaatttg gcttcgtcgc gtgtaatgct      3120
     gatccgtgta tgtatgttgc atcgaggaat ggcaggaagg tatttctgat cgtttatgtt      3180
     gatgatctgc ttgttggatg ctcgtctgag gaggaggtag ctaaagtgta cgaggaactt      3240
     cgcaaagagt ttgaaatttg ttggctaggt gatgcgaagt attttcttgg gttggagctg      3300
     caaaaggaag acgacggatt ctacagcatg agtgtcaagg catatataga gaaactgatc      3360
     ggaaagctag gattgcaaga tgcgaaggtt gcaaggacgc cgatggatca agggtatgtg      3420
     aaggacaaga cagcaagcga gaatctaaag gatgtatccc agtaccggag cgtggttggt      3480
     gctgtgatgt acatagcggt tacagcacgt cctgatattg ccgcagcggc ctccatatta      3540
     ggaaggaagt tcagtgctcc aacagaaatc gactggacta cagcaaagcg tgtagtgcgc      3600
     tacctcaagg caacaaagga ttggaagttg aagttgggtt gcgaaggcgg caagctgttg      3660
     gaagcatatt cggactctga ctgggcaggt gacccggaca cacgcaagtc tacgacgggc      3720
     ttcgtaatat tctacgcagg aggagctgtg tcgtgggcta gtagacgcca agattgcgtg      3780
     agtctatcgt ccatggaggc cgagtatgta gcactgggtg agacttgtca agatgtgcta      3840
     tggttgcgac gattgctgag tgacatcggc gagaaccagg agtgtgctac tacggtgcac      3900
     gaagacaacc agggttgcct gtgtttcgtc aggtctgagc ggacaagcaa gaggaccaag      3960
     catatcgaga cgaaggagag tttcatcaag gatctatgcg atcgtggcat agtgaaactt      4020
     cagtactgtc ccacagatga aatgaaggca gacattttaa cgaaggcact tggaaatata      4080
     aagcacgacc gcttcaccga actactaggg tttgttaagg gctaagggca aaccgttgag      4140
     gaggag                                                                 4146
//
ID   Copia-11_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   supercont1.46;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_AA_;
KW   Copia-11_AA-I; Copia-11_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-273
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.46; Positions 2090616 2090344.
XX
SQ   Sequence 273 BP; 62 A; 58 C; 55 G; 98 T; 0 other;
     tgttggcaga aaacaacggt tacccctatt atgaacagtt tgccgaaccc ctttgccaat        60
     tagttaagcc ggcatcactg gcgagtttga catttatgtt ttatgtaaga ataacaagaa       120
     ggattatgtt tatttatttg attagtttac aacaatatac gtctgtgttc ggcacgttcg       180
     agttttccct cccgtgatat ttttccgaat ttcccggtag tttttccgag ttcgtacgtg       240
     gttccgctgc gctcctgttc gctttgttca aca                                    273
//
ID   Copia-11_CQ-I repbase;    DNA;    INV; 4695 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_CQ_;
KW   Copia-11_CQ-LTR; Copia-11_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4695
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 337-337 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [2074-2577] - Integrase core
CC   'AGTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..4695
FT                 /product="Copia-11_CQ-I_1p"
FT                 /translation="MSTERGTLGQLPYTALQVRETIFDGREGTFGTWKHRL
FT                 LRRLAKLRLDHCLIRTPLEEACAVDLLDTKVDEAKKEVYRKRLNDDTDALD
FT                 EIVMAVNNDVLNYIIGATCAKEAMGILIHEFQKEGTGCLISMRGRLQTLRE
FT                 RKFDSLSELFYHYDVIVRELDRLGAKMSNAEKIHSLLLAIPGRFNHVRGAL
FT                 TVLPNEELCKKPIAEIKRMFLDAEMAMGEERKNGREERSGPPNVALKTSSK
FT                 KAEPKCFGCGEIGHYKNRCPRRPRKQRNGHGGGRAAGGHAMIARAGRTIRQ
FT                 AKLVKLARAVITRHRENAMPIRGREREQPRENAEPARGREREQPSDRAVPT
FT                 RDREREQPCDHAVPTRGREREQPCNHAVPIHRCAAVKIPPTTPQKDLRERV
FT                 RVLTAKKLPRERELPHKAASPRERHRERTTTHGSSVTTVKSREQALAMGEV
FT                 AREQPRENRRAALKRAIWMGERPVQRKVRFVIDSGATNHMVREENLLEKVE
FT                 EMKQPLIISTAKSGESLRAIKKGKVTLRSVVGNVIKMVNLYNVLFIPGLET
FT                 NLLSVRKATTAGKRVTFQGGEVIFDDKGEVIAKGKLVDGLYSVEFLREFSD
FT                 SALLGKKELDIHRWHKRLGHLSYGAIWTLLNKKMADGFNCAASSSDRDAIC
FT                 EGCLAGKQTSRKFRKMELPRSSRPLELVHSDVCGYMEKSTQEGFRYFVTFI
FT                 DDYSHYTVIYLLKNKSEVFQKFKEYEALATANFGQKLSKLRCDNGREYVGK
FT                 EFQEFCKEKGIQMVLTVPYTPQQNGVSERINRTLMEKVRAMLFDSKLPKSL
FT                 WGEALYCATYLTNRSPTRALLDNKTPFEIWNRKKPNLSNLRIFGCPAYAQI
FT                 PKEKRRKLDPKTKRLIFVGYANNGYRLWNNFTRCVEIHRNVVFDEESMLDV
FT                 EELIYTNFKQSKPEHNSQDRSDYIKGEIPQSSEESADETTPKADPSLTDDD
FT                 DDDEDGNDVSEYDDADDNLDDIETAPEEHFNEEAQVESLESMDDKITKEGE
FT                 VGVQPTLRRSKRTKKTTRNLTVLATSNFEEIPQTISELKLRDDWDSWKEAV
FT                 NDELGSMKANNTWVAVNSVPEGRKSINSKWVFTVKDDGRYKARLVAKGCSQ
FT                 RPGFDYIETFAPVVRMESVRTILALANEFGWLIHQMDVKTAFLNGDLNETI
FT                 FMKLPNDELCRSQVVRLQKSLYGLKQAGRAWNKKFDDEVKKLGFVQLKSDC
FT                 CVYRSSTKQLGMVLYVDDILIIGEKESNINWIKNQLGRLFQMKDMKEIKHF
FT                 LGMDISRNFQKQTLEISQVGYTEKILKRFGMSECNPVGTPLDPNVQWRETA
FT                 DDELTTHPFKELLGCLQYLAITSRPDICAAVSALSKYQAAPSDLHWAGLKR
FT                 ILRYLQGTIETKIVYEKKRDHHIMLGYADADFANDKDNRKSVSGYALVVFG
FT                 NLVAWSTKRQPTVSLSSTEAELISLCTAAKEGLWLTNLLNELSVANTSFTI
FT                 MEDNIPCIRIAEEPRSHQRTKHLDLKYLFIRELIAEGKLQLRHISTNDQPA
FT                 DAFTKGLPKLQHRKLTNLLNVRIEGR"
XX
SQ   Sequence 4695 BP; 1411 A; 1041 C; 1241 G; 1002 T; 0 other;
     ggttatgggc ccagccttaa ccgtttagag atctatctgc ctttgtttga agaaagttaa        60
     gactgagaaa tgtcgactga gaggggtact cttgggcaac tgccgtacac ggcgttgcaa       120
     gtccgcgaga ccatctttga tggccgcgag ggaactttcg gcacgtggaa gcaccggctt       180
     ctcaggcggc tagccaaact ccgattggac cactgcctca tccgcacccc attggaggaa       240
     gcatgtgccg tcgacctgct ggacaccaag gttgacgagg ccaagaagga ggtttaccgg       300
     aagcggctga atgacgacac cgatgccctg gatgaaatcg tgatggccgt caacaacgat       360
     gtactcaact acatcatcgg agcgacgtgt gcgaaggagg ccatgggtat cctgatccac       420
     gagttccaaa aggaaggcac cggttgcctg atctcgatgc gcgggcgtct tcagacactc       480
     cgagagagaa agttcgactc tctctcggag ctgttctatc attacgacgt catcgtccgc       540
     gagctggacc ggctcggcgc aaaaatgagt aatgcagaga agattcactc gttgctgctg       600
     gccattccgg gacgcttcaa ccacgtgcgc ggggcgctca cggttctccc gaatgaggaa       660
     ctctgcaaga agccgatcgc agagataaaa cgtatgtttt tagatgcgga gatggccatg       720
     ggagaggagc ggaagaacgg gagagaggaa cgctcggggc caccgaacgt ggcactaaaa       780
     acttcatcga agaaagccga accaaaatgc tttggctgtg gagagatagg gcattacaaa       840
     aatcgttgcc ctagacgccc acggaagcaa cgaaacggac acggcggcgg acgagctgct       900
     ggaggacatg cgatgatcgc acgcgctgga agaacgattc gtcaagccaa gctggttaag       960
     cttgcacgtg cggtgatcac cagacatcgg gagaacgcta tgccgatccg cggcagagag      1020
     cgtgagcagc ctcgggagaa cgctgagccg gcccgcggca gagagcgtga gcagcctagc      1080
     gaccgcgccg tgccgacccg cgacagagag cgtgagcagc cttgcgacca cgccgtaccg      1140
     acccgcggca gagagcgtga gcagccttgc aaccacgctg tgccgatcca ccgttgtgct      1200
     gcagtgaaga taccaccgac gacgccgcag aaggaccttc gtgagagagt tcgggttctg      1260
     acggcgaaga agttgccacg agagcgtgag ctaccacaca aggcagcctc accacgagag      1320
     agacatcgcg agaggacgac gacgcatggg tcatcggtga cgacggtgaa gtcacgtgag      1380
     caggcgctgg ctatgggaga agtagctcgc gaacaaccac gtgaaaatcg tcgagcggcc      1440
     ttaaagagag cgatctggat gggagagcgg ccggtgcaaa gaaaggtgcg ttttgtcatc      1500
     gactcgggcg ctacaaacca tatggttcgc gaggagaacc tattggaaaa ggtggaggaa      1560
     atgaagcaac ctttaattat ttccaccgcc aaatcaggtg agtccctgag ggcgattaag      1620
     aagggtaaag ttactttgag aagtgtcgtt ggaaacgtaa taaagatggt taatctttac      1680
     aatgttcttt ttattccggg tttggaaaca aacctacttt cggttagaaa ggccaccact      1740
     gctgggaaaa gggtcacttt tcagggtggg gaagtcatct tcgatgataa aggcgaggtt      1800
     attgctaaag ggaaattggt cgacggtctg tacagcgttg aatttctgcg ggagttttcc      1860
     gattctgctt tgcttggtaa aaaggaactg gatattcatc gatggcataa aaggttgggg      1920
     catctcagct acggggccat ttggacgtta cttaacaaaa agatggcaga cggattcaac      1980
     tgtgctgcca gctcttccga cagggatgcc atctgcgagg gttgtttggc tggaaagcaa      2040
     accagtcgaa agttcagaaa gatggaattg ccgagatcat ctaggccgtt ggaattggtc      2100
     cactcagacg tttgtggtta catggaaaaa tcaacccaag aaggttttcg ctatttcgtc      2160
     acctttattg atgattactc ccattatacc gtcatttacc tgttgaaaaa caagagtgaa      2220
     gtttttcaaa aattcaaaga atacgaagct ttggcaactg ctaattttgg tcaaaaattg      2280
     agcaaactaa gatgcgacaa cggtcgagaa tacgttggga aggaattcca agaattttgc      2340
     aaagaaaagg gaattcaaat ggtcctcaca gttccctaca cgccccagca aaatggggta      2400
     agcgaaagaa ttaacagaac gttaatggaa aaggtacgag ccatgctgtt tgatagcaaa      2460
     ttacccaaat cgctgtgggg ggaggcctta tattgtgcta cttatttaac gaatcgatct      2520
     ccaacgaggg ctctcctgga caacaagaca ccctttgaga tttggaatag gaagaaacca      2580
     aatctgagca acttaaggat cttcggctgt cctgcttatg cgcaaattcc gaaagaaaag      2640
     cggcgcaagc ttgacccaaa aaccaaacgc ttaattttcg tgggttacgc gaataatggg      2700
     tatagactct ggaataactt cacacgttgc gtagaaatcc atcgaaatgt ggtttttgat      2760
     gaggaaagca tgcttgacgt ggaagaacta atttacacca acttcaagca gtcaaaacct      2820
     gagcacaatt cccaggaccg ttcagattac atcaaagggg aaataccaca aagcagcgaa      2880
     gaatcagctg atgaaacaac gccaaaagcc gacccgagcc tcaccgacga cgacgacgac      2940
     gacgaagacg gtaatgacgt cagcgaatac gacgacgctg atgataatct tgatgacatc      3000
     gagacagcac cagaggagca ttttaatgaa gaagcgcaag tagaatcttt ggaatcaatg      3060
     gatgataaaa tcacaaaaga aggggaggtt ggggtacaac cgactttacg tcgatcaaag      3120
     agaactaaaa agacgacgag aaatttaaca gtacttgcta catcaaattt tgaagaaatt      3180
     ccccaaacaa tttcagaact gaagttgcga gatgattggg atagttggaa agaagccgtc      3240
     aatgatgagc tcggatcgat gaaagcaaac aatacctggg tagcggttaa ctcggttcca      3300
     gagggaagaa aatcgatcaa ctctaaatgg gttttcaccg tgaaggacga cggaaggtac      3360
     aaagccaggc tggtagccaa gggatgctca caacgccctg gattcgacta catagaaacg      3420
     tttgcaccag ttgtaaggat ggaaagtgtt cgcacaattc ttgccctagc gaacgaattt      3480
     ggctggctca ttcatcaaat ggatgtgaaa acagcttttc taaatggtga cctcaatgaa      3540
     accattttta tgaagcttcc aaatgatgaa ttatgcagat cgcaggttgt gcgcctgcag      3600
     aagagtttgt acggattaaa acaagccggc agagcatgga acaagaaatt cgacgacgaa      3660
     gtgaagaaac ttgggttcgt ccaactgaaa agtgattgct gtgtgtaccg atcaagcaca      3720
     aaacaacttg gaatggtact gtatgtggat gacatactca tcatcggaga gaaggagtcc      3780
     aacatcaatt ggatcaaaaa tcaacttgga aggctattcc aaatgaagga catgaaagaa      3840
     atcaaacatt tcttgggcat ggacatctcg agaaattttc aaaaacaaac acttgaaatt      3900
     tctcaggtag gttataccga aaagatatta aaaaggtttg gaatgtccga atgcaacccc      3960
     gtcggtacac ccctggatcc gaacgttcaa tggcgagaga cagcggatga tgaattaacc      4020
     actcatcctt tcaaagagct tctaggatgc ctgcagtacc ttgcaattac ctctcggcct      4080
     gacatctgtg ctgcggttag cgcactaagc aagtaccaag cggctccatc agacttgcac      4140
     tgggctggtc tgaaacgaat actacgctat ctacaaggca cgatcgagac caagatcgtc      4200
     tacgagaaga agagggatca tcatattatg ctgggttatg ctgatgcaga tttcgccaac      4260
     gacaaagaca atagaaaatc ggtgtcgggt tacgcacttg tagtctttgg caacctagtt      4320
     gcatggtcta ccaaacgtca gccaactgtc agcctatcgt caacagaagc agaattgatc      4380
     tctctatgca cagcagctaa ggaaggtttg tggttaacaa acctcctaaa tgaattgagt      4440
     gtggctaaca cttcattcac aattatggaa gacaacatcc cgtgtataag aattgcagag      4500
     gaaccccgga gccatcagcg aacgaaacat ttagatctga agtatttgtt catcagggag      4560
     ctgattgccg aaggaaagct gcaactgaga cacatcagca ccaacgatca accagctgac      4620
     gcgtttacca agggacttcc gaagctgcaa caccgcaaat tgacgaactt actcaacgtt      4680
     cgaattgagg ggagg                                                       4695
//
ID   Copia-11_CQ-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_CQ_;
KW   Copia-11_CQ-I; Copia-11_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-302
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 338-338 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 302 BP; 116 A; 53 C; 50 G; 83 T; 0 other;
     tgttgaaata aacacgcgaa gatcaagcaa aacatcttgt ttataaacac aaaagtcaat        60
     tcgacattga cagttcaatt aggtttacac agtccgttga attaggtcaa cacatgaaaa       120
     tacaaaacat ttatagggtt ccggctaggg ccagtgcaac cagttctaac agaatgttat       180
     tcttatgaag tgttgctagt tgaattaata accatcgata acgtacatag tacagcttta       240
     gttgtaagat acaccgagaa ataaagacga caagttttat caaacaaact caaatcttat       300
     ca                                                                      302
//
ID   Copia-11_DTa-I repbase;    DNA;    INV; 3805 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   31-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3805
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, 3'-part is truncated.
XX
SQ   Sequence 3805 BP; 1185 A; 681 C; 1006 G; 933 T; 0 other;
     tttctatcag gttatgggcc cagagtgcct gcactgcgcg aaaggaatat aaagagtttt        60
     gcggttgtgt ttaattgtcg cggtaaaaag tgaactgttc cctgcgagga aagttctgga       120
     cttcaggcca aatcggtggc ttcgcgttta aacacagtag cagttgtgtg tactacttgc       180
     ggtaaaaagt gaacagttct ttgcgagaaa agttctggac tttcggccaa gtcggtggct       240
     tcgcgaatat acactgcaat gatgaatccg agtatgaatt ctattgaaag actagacgat       300
     cagaattaca gcgcgtgggc tgtgcaaatg aaaagcgttt tcatatacgc agatttgtgg       360
     gcagtggttt gccgccgtgt aataaagcat gaggatgaca gtgaagaaat aaaggctgca       420
     ttcgacatca tggatgagaa agctcttgcg agcataatgc tgcatataaa gcagtcccaa       480
     ctaaatcatg tgaaacattg tcagaccgca gcagaagctt gggaaaagct attacaaata       540
     cataggccga cagggccagc aaggcgtgtg tttctgctta ggcaactgct tcgcatgaaa       600
     atgacggagg aagacaatat cggatcacat ttaagcagtt ttgctgatat tctcgaaaag       660
     ttgagcgaga tcggggtagg actacccgaa gaagtaatag ttattctgtt actgtctggt       720
     ctgagcgacg cctttaaaaa ttttgttgtt gcggttgagt cgcgcgacat tttgccatcg       780
     ttacatgtgc tgaaaatcaa attattggaa gaaggcgaga gacgaaaaaa cgacgaaatg       840
     gttcgcgaaa acgagactaa aatgttcgcg tcgagaagtt tgaaaattgg gataaaacct       900
     gaatggaaaa acaaagagaa gagcaagaga acgtgctgga cttgcggtcg tcaagggcat       960
     attgctgtaa attgtcccga aaaggaagag gccgaaaaga aagagggcga aaagaaggag      1020
     aatactcgca attattcagt tttcgcttac ggaacgagtg agttcggaaa gtaccgagag      1080
     agtgtctggg gcatagatag cggcgcaacg acgcatttat tctgtgatcg cgcaagtttt      1140
     gtaaacataa aggaacacag agaaaaaata gtgttggccg gcaataatag catcatggcg      1200
     gaaggtactg gaaaggtgcg catacggtat aagaagagta cgatcgatct cgtgaatgtg      1260
     ctttatgtaa aagacttcca gtgtaatttt ctatctgtac cgagagcagt tgaaaataga      1320
     tttcgtgtag agtttgccga aaacagtgcg cagataacaa ataaaaatgg aaccgttgtt      1380
     ttgagagcca ataagaaaaa tgatttgttt ttatttgaaa acaacgagaa cttgtgtttt      1440
     gcggctgaga cgaatgggtc tgaaataata aaatggcact ataggcttgg acattgaaat      1500
     tttggaatcc cacacaaaat ggttaaatat aacatggtgc gtggactaaa aacgaaaatg      1560
     tgtgatatgc gagagcatgt gtgcgaaacg tgtgctaaat gtaaaataac agtgaagccg      1620
     tttccaaagg ttgcagaaaa tcgggcgaac aagattttgc aacgtgtaca cacagacatt      1680
     tgcggtccga tgagtaaaac gtcaaacgga ggaagtcggt atttcgtaac atttatagat      1740
     gataaatcac gatatacgca tgtttgtttt ctaaaaacgc gggatgaagt ttttaacaag      1800
     tttagggatt ttaaggcctt ggtggtaaaa ccaactggag agaagctgaa atccctccgc      1860
     agcgacaacg gacgggaata tgtgagtggc gagtttacgc agattctggt aagaaatggt      1920
     atacaaagag agctcactgt gccttatacc gcaacaaaac ggtgtagcgg aacgagcaaa      1980
     caggacactc gttgagatgg ctcagagcat gttgtagtat gctggtctgg acgaagcatt      2040
     ttgggcgaaa gccgtagctg ctgcagcata cttacggaat cgatcggagg cataatcgtt      2100
     ggcaaacatg acaccgttcg aagcttggtt cgggcggaag ccaagtgtgt ctcatctcaa      2160
     ggtcttttga gtaaaggcga tagttttgga caagaaatat catcgtaagt ttcaaccaaa      2220
     agaagttgag catgtgttcg ttggatattc ggatacggct gtggcgtatc gtttgtataa      2280
     cccatgtact ggaaaattta cagaatcacg tgatgtaata tttttggagt catttcagca      2340
     gcaagaaagt gctgatcttg gtctcgtccc gcaagatcaa gagttggcgg tccatgaaga      2400
     gagtgagtcc gtcacagaat ccagcgatga agacgcacaa caagaaatta tgcctgaagc      2460
     aaagatgctg ccagaagcag agatgctatc ggaggcagag gtgctgccaa aagatagacg      2520
     aggcccaggg agacccaaaa ttgtgcggag tggtctttgt gggagaccaa gaaaggagta      2580
     ccagactgtc aatattataa cgaactatga tgacagtgtt ccagccagtg taaaggatgc      2640
     acttagttca aagtatgcag aagactggat gagttccatg caacaagaga tggataatct      2700
     gaaggaaagg aaaacctgga cgcctgacga gatgcatcca gaaatggtcc ttaagctgca      2760
     taaatcgctc tacggcctaa aacaaagtgg tcgtgagtgg aatagcagcc tgcacgaact      2820
     tattctggag ttggggttct cagcatgtcc gagtgaaccc tgcatctaca aacgggatca      2880
     tgttcgccag atgagtttca ttgtagtcta cgtagatgac ctcataattg cgagcgacac      2940
     caaagctgac ttggacgaat ttaagtaccg aatatcgaaa aggttcgatg ttgtagatgg      3000
     cggtccccta aagcatttcc tagggattga aattgatcga aatggcgatg ttggcagcgt      3060
     tcgagtgggc cataagcagt acatagagga cttgttggag aactatggga tgcagaactg      3120
     taaggcgtcc aatctacccc tcgaagctgg ctatcaggct cgatgcaacg acaaggagtg      3180
     cttgcgagca aaccaggctg agtatcagtc cctgatagga tcgctcatgt atttggctat      3240
     aacgacaagg ccagatatac tttattctgt ggcaaagctt gctcaacaga actcggaccc      3300
     acatcgagag cacatggtgt gtgccaagcg agtcttgagg tacctgcagg gtacgaagac      3360
     attccagtta tctattgtta tgtagatgcc atctgggctg gagacaacag cgaccggaaa      3420
     tccttcaccg gctggacgtt tttagcagca ggagcagcga tcaattggga gtctaagaag      3480
     caacccgtgg tagcactcag tacaaccgaa gctgagtacg tctcactttc ttcagctgca      3540
     aaggaagcag tgtatattcg taaactatgg tgcgagatgg gtcttggcga ggttccacgg      3600
     attatgattc atagcgataa tcaaagcgcg cagtgtctgg taaagaatcc tgtatatcac      3660
     gcgcgcagca aacatataga tattttgagg aaaagcttat agatttgaag tatgtatcta      3720
     ctgaaaacat gatggcagat gtatttacga aaaatgttag caaagttaag cacatgaaat      3780
     tattaatatg atgggtttgc tgtaa                                            3805
//
ID   Copia-11_DTa-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.10, Created)
DT   31-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-11_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-165
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 165 BP; 47 A; 36 C; 35 G; 47 T; 0 other;
     tgttagaaat aaagaagtaa ttgggcaacg ccgtctgtca gctgataccg atagttgcct        60
     gcgtgcaaat ctcgatagct cacaagttct gtttctgatc tataccgcca gcgcgaatgg       120
     tcgcgtattt tgtattccta ttaaactcgt aataaagcag caaca                       165
//
ID   Copia-11_LH-I repbase;    DNA;    INV; 4171 BP.
XX
AC   ADOQ01004310;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_LH_;
KW   Copia-11_LH-LTR; Copia-11_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4171
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004310; Positions     456    4626.
XX
CC   Positions [1649-1966] - Integrase core
CC   'TCGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           139..1671
FT                 /product="Copia-11_LH-I_1p"
FT                 /translation="MGKEFVIEKLRGSENYHTWQFAMQSVLEFEELDGTIA
FT                 EANTETDPTKVKKARARIIVSVEESLYVHIQGHTTAIGVWTALKHLFDDKG
FT                 LTRKITLLRHLITVRRDECNSMTEYISEISSTANKLVGIGFAITDEWIGAI
FT                 MLAGLGEEYRPLILGLESSGVALTTDSVKTKLLDVDRGHQGESSSALLGHP
FT                 KAGASGGKKSDKKKFGFKCYNCGKVGHKRSECKSKPKAQSENAKLTNAFMV
FT                 NDRMVASTNWYLDSGASRHMTPHRNILQNFRPGNFPEILTANNQKLKVLGS
FT                 GMVLVSIDGVNIQIEGGALRAAIGGKFAVSGEITAAGNKVQFDGTDCRIYN
FT                 PRGQILLQAQMRNGVYVVDSNAIECRLASGDMVGADGMEKDAMDWHRKLGH
FT                 LNIGDMIRLKGLVDGLEFDGNGEDVKECITCMMGKQSRAPFHSSNTEIKST
FT                 EILELVHTDLCGPMEVTSSGGARYLLTFIDDFSRKVFVYFLKSKAEVSDNL
FT                 KAFVKMVERQTGSTS"
FT   CDS           1802..3121
FT                 /product="Copia-11_LH-I_2p"
FT                 /translation="MNRTLVERGRCLLIDAELEKRFWAEAVNMAAYVVNRS
FT                 VNRSLGRKVPEEVWRGKRIDVSNLKIFGTPVMVLIPEIYRKKLDPKSKQLV
FT                 FVGYSETQKAMRCLDVKNGKVFVSRDVKFLEPRKAKVIVKHFIEDDVDVIP
FT                 EKPEKQPKGVGGARQRDPEDDRGNDGGETAVNNAADGRTTGTPDNNIEGNE
FT                 PELSPEEALRKSRRTRKPPERLGDYVTYRAEDIERSGEPETAEEALAGPHA
FT                 VEWKLAMDEEMQAMEANGTWTLEELPEGRKAIKTKWVFKRKLAEDGSVLRY
FT                 KARLVAKGCSQKYGLDYVETFSPVVRYTSIRLLIALAVKWNMKIDQMDAVT
FT                 AFLQGDLDEEIFIEQPPSYSDGSGRVCKLKRAMYDLKQSGRQWNIVLDNVL
FT                 RSYGLEKSKMDPCVYHTKNTSLIVAIYVDDFLIFWRVQGSAEPPEA"
XX
SQ   Sequence 4171 BP; 1217 A; 902 C; 1147 G; 905 T; 0 other;
     ggttatgggc ccagagaatt agaaattagt ggaattgtcg gtattttgtt gtgcaaagta        60
     atatttcggc aaaattgcgg aattacatgg ttaacctatc gtattgagct cgcgtgtgaa       120
     aaggttagaa tcgaaacaat gggaaaagaa tttgttatcg aaaaactccg cggctcggaa       180
     aactaccata cgtggcagtt tgcaatgcaa agtgttcttg aattcgagga actcgatggc       240
     acgattgcag aagcgaacac tgaaaccgac ccaacaaaag ttaaaaaagc gagagctcgg       300
     attattgttt cggtggaaga atcactttac gtgcacatcc aaggtcacac gacggcgatt       360
     ggcgtctgga cggcgttgaa acatctgttc gacgacaaag gtctcacacg gaaaataacg       420
     ctgctgaggc atctcatcac cgtgcgccgc gatgaatgta actcaatgac ggaatacata       480
     tcggagattt catcaacggc gaataaattg gttggcatcg gattcgcgat cactgacgag       540
     tggatcggtg cgattatgct ggctggactc ggtgaggagt atcgtccgct cattctcgga       600
     ctggaaagta gcggagtggc actgaccacc gatagtgtaa agaccaaatt gctcgatgtg       660
     gacagaggcc atcaaggtga gtcatcgtca gcactcctag gtcatccgaa agctggcgca       720
     agcggcggaa agaaatcgga caaaaagaaa ttcggtttta aatgctacaa ctgtggcaag       780
     gtcggtcaca agcggtccga atgcaaatcg aaaccgaaag ctcaatcgga gaacgcgaag       840
     ctgacgaatg cattcatggt gaacgatcga atggtggcca gcacgaactg gtacctggac       900
     agcggagcgt cgagacacat gacgccgcac cgaaacatcc tgcagaattt tcggccagga       960
     aatttcccgg aaattttgac cgccaacaac cagaagttga aggtgcttgg tagcggcatg      1020
     gtgctagtgt caatcgacgg tgtgaacatc caaatagaag gaggtgctct acgtgccgca      1080
     attggcggca aatttgctgt cagtggcgaa atcacagcag ctggaaacaa ggtacagttc      1140
     gatggaacag actgccggat ttacaacccg agaggtcaga tattactgca agcgcaaatg      1200
     cggaatggtg tatacgtggt agacagcaat gcgatcgagt gtcgtctggc gagtggcgac      1260
     atggttggtg ccgacggaat ggaaaaagat gcaatggatt ggcacaggaa gctcggacac      1320
     ctgaatatcg gcgacatgat tcgattaaag ggcctggttg acggcctcga gttcgacgga      1380
     aatggtgaag acgtgaagga atgcatcacg tgcatgatgg ggaaacaatc tcgggcccca      1440
     tttcactcgt cgaatacgga aattaaatcg acggaaattc tggagttggt gcacacggat      1500
     ttatgtgggc caatggaagt gacatccagt ggaggagcca ggtacctgtt gacattcatc      1560
     gacgatttct ccaggaaggt attcgtctat tttctaaaat caaaagcgga ggtgagtgac      1620
     aacctcaagg ctttcgtgaa gatggtagaa aggcagacag gatcgacgag ttaagcgcat      1680
     taggtccgac aacgggactg agttcgtaaa cggcgccaac aaggcatttt tcaaaaatgc      1740
     tggaatcatc cacgagacgt catgcgccta cacaccccaa caaaatggtg tagcggaacg      1800
     catgaaccgg acactggtgg aacgtggaag gtgcctactc attgatgcgg aattggaaaa      1860
     acgcttttgg gctgaagcgg ttaacatggc agcctacgtc gtcaatcgat cggtgaaccg      1920
     ttcgcttgga agaaaagttc cagaggaagt atggcgtgga aaacgaattg acgtgtcaaa      1980
     cttgaaaatc ttcggcacgc cagtaatggt actcatcccc gaaatctaca gaaaaaagct      2040
     cgatccaaaa tcgaagcagt tggtgttcgt cggatattcg gaaacgcaga aggcaatgcg      2100
     gtgcctagac gtcaaaaacg gaaaggtttt tgtgagccgt gacgtcaagt tcctggaacc      2160
     tcggaaagca aaggtaatag tcaaacattt tattgaagat gatgtcgacg tcattccaga      2220
     gaagccagaa aaacaaccga aaggagttgg gggcgcacgc cagagagatc ccgaagatga      2280
     tcgaggcaat gatggtggcg aaaccgcggt caacaacgct gcagatggtc ggactacagg      2340
     cacgccggat aacaacatcg aaggcaacga acccgaacta tcaccggaag aggcattgcg      2400
     gaaatcgcgg cgaacccgga agccacctga acgactcgga gactacgtta cctaccgagc      2460
     ggaagacatc gagcgttctg gcgaacctga aacagcggaa gaggcgctgg ctggaccgca      2520
     cgctgttgaa tggaaactag cgatggacga agaaatgcaa gcaatggaag ccaacggaac      2580
     gtggacattg gaggaactac ccgagggtag gaaagcaatc aagaccaaat gggtgttcaa      2640
     gagaaagctc gccgaggatg ggtctgtgtt gcgatacaag gctcgcctgg ttgccaaggg      2700
     gtgctctcag aagtatggac ttgactacgt cgagacattc tctccggtag tgcgttacac      2760
     atcgattcgt ctcttgatcg cactggccgt aaagtggaat atgaaaattg accagatgga      2820
     tgcggtgact gctttccttc aaggcgattt agatgaagaa atcttcatcg agcaaccgcc      2880
     ttcgtacagc gatggaagtg gtcgcgtgtg caagctaaag agggctatgt acgacttgaa      2940
     gcagagtggt cgtcaatgga acatcgtttt agacaacgtt ttacgatcgt acgggctcga      3000
     gaagtcgaaa atggacccgt gtgtgtacca cacaaagaat acatcactca tcgtggcaat      3060
     ctacgttgat gactttctaa ttttttggcg ggtacaagga agtgctgaac cgcctgaagc      3120
     ttgagtttgg ggactcactt caaaatgaaa gacttgggcc gagcccgaac gtgcgttgga      3180
     atcaacataa tatacgtaga taatggaata gcaattgacc aatcgtcgta catcaagaac      3240
     atgttgatgc ggttcggaat ggaatttgcg aacccgttgc cgactcccag cgttccaaat      3300
     gaaaaactgt caatcaacat gaagaaggaa ggggaagaca caagtaacat tccctaccaa      3360
     gaggttgtag gatgtctctt gtatctggtt caaggaacgc gaccagatat tgcatttgct      3420
     gctgggaacg tgagcaggtt taacacaagc cacggacaag ttcactggac cgccgtcaag      3480
     cggatcttca ggtatttgaa aggaacaatt aattattcaa ttctttttat tcgttccgat      3540
     gacctgaagc tccatgggtt tgctgatgct gactggggtt cggatgtgga cacccgccgg      3600
     taatgcaccg gatacgtttt tatgctgggc acaggcagta tctcatggct cagcaaacgt      3660
     caaccaacgg tagctctgtc ctcaaccgag gcagaataca tggccatggc aacggccacg      3720
     caggaagcag tctggccgaa gcagtttcat gagcagttcg agaaagctga ggcaattcac      3780
     ctcgaatgtg acaaccggag tgccctcgac atcgcgacta cggactgtta tcgggccaga      3840
     accaagcaca ttgatacgcg acaccactat gtacgcgaaa aggcgatcga cggaactatt      3900
     gaattactgc acgttccaac tgccgaaaat gtagctgact gtctcaccaa aggagtgacg      3960
     ggccagaagc agaaattctg cgctcaacgt atgggtctgc agagtatcgt aagccaaaga      4020
     gttggtttgg accttcagtc caactgacca tcatcctaac ttttgggcca tttggatgag      4080
     tcactaaggc tcatcaggcc agtgatatta atgtacctta gctttatttc cttgagttcc      4140
     tttttagatt gtagcttacg ataagttggg g                                     4171
//
ID   Copia-11_LH-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   ADOQ01004310;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_LH_;
KW   Copia-11_LH-I; Copia-11_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-188
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004310; Positions     268     455.
XX
SQ   Sequence 188 BP; 39 A; 47 C; 36 G; 66 T; 0 other;
     tgttgtcatg taaacgcccc gctatgccgt tgagcggtgg cgctgtatgg cgctgtagac        60
     ggtgagcgct tctctcttac tatgtcggtc ttgtctaact tacttccggt ttcttcccgt       120
     atataaaaat aaagctctcg tgctaatttt cttcaaacaa ttctttttat tcgtaccaat       180
     cctcaaca                                                                188
//
ID   Copia-11_LMi-I repbase;    DNA;    INV; 4241 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4241
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3093-3093 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(218..3055,3021..3161,3161..3292,3250..4218)
FT                 /product="Copia-11_LMi-I_1p"
FT                 /translation="MALAGQSLFNFEKLTGMSNYNDWKFTIEMYLKHEGLW
FT                 NTIAGTDTDSNNVQKALSKICLSVSSSVYPKVRGATTAKEAWENLQSAFED
FT                 KSLSSYIGLLQCLMNVRLNSEKDMETYLSKIMSLAQQIRSIGKKIDDDFVA
FT                 AIMLSGLPSDFQPLIMAIENSGVSITSDFVSQRLIQESTKRQFASTNGNQD
FT                 SALAAGKQRYTQXKSNSNRDTKNMKAIKCYKCQRIGHKANECQTRKKSNIS
FT                 KSSANSVKSEDENVLMALTTSSSYSDGWYVDSGCTRHMTNKEDWLNNFEST
FT                 TATNVTVADNSNLQAIAEGSVRLELTSDEANKPVTIKDVAYVPGLAYNLLS
FT                 VSQTTRHGLCVLFNDVQCGIYNKKDVLISGTPVATATQVGGMYRLNEIRHC
FT                 ANAVDTDNYDLWHRRLGHLNRVSMRLLKEKMADGLNWTNINLDPCISCIKG
FT                 KQSRQSFPKTSSRRAEGLLDIVYSDVCGPMSMASWGGARYLLTFTDDMSRK
FT                 SFGYMLKSTKEVYDIFIEFKARVENETGRKIRILHTDNGKEYINERMKTFL
FT                 KANGIRHETTVPYTPQQNGVAERLNRTIIEKARSMLTDAGLSKQYWAEAVN
FT                 TAIYLKNRSPTKAVKNVTPEELWSGRRINLSHLRIFGCRAFVHVPKEKRTK
FT                 LEDKSKELIFVGYCEDSKAYRLIDPNSPTKIVKARDVQFIENSKCQCGNDC
FT                 MKNIKSTGDKHINNGPLDLINDNCTDIIQPAAVPNIVDMTVEPTQPTDDKN
FT                 LVQFEMTQSDAEQAVNCNFDQDTDQQDTIPMQPETRKSSRQKCLNPKYFND
FT                 DFVCVARIPEPKSFTEAMTRDDWEKWKEALDEEYKSLLENETWTLTDLPPG
FT                 RKTINSKWVFKVKETANGDIERYKARFVAKXYSQIPGVDFXETFSSVVRHS
FT                 SLRTLLALAAKLDLDIEHMDVRTAFLYGDLNEEIYIRQPEGTMKKFTFVNL
FT                 KVREKGEEAKVCKLKKAIYGLKQAPRVWYQKLDTTLRKMNLKKSEYEQCIY
FT                 YRIEKENVLIVAVYVDDLIIFQTEVINTNKNSHHFSNRSNKYKQELKTELM
FT                 NRFKMRDLGELSWCLGMRVKRDRKQGTITIDQSKYAANILKKFGMEDCNPV
FT                 AYPIEPGLKLQKCEEKLTEEEELALKRIPYQQAVGSLLYLSQGTRPDIAYA
FT                 VGVVSRFNSSYRKIHWEAVKRILRYIKGTINTGLIFKRXGSTKVEGFCDAD
FT                 YASELDQRRSTTGYVFKLAGAAVSWNTKLQQTVALSTTEAEYMALSTAAQE
FT                 AMYLQGLLSELCVKHSEKPVSVFCDNRGAVALSHNGVYHARTKHIDVRHHY
FT                 IRELINAGKLTVKSISTDKQEADFLTKALPKVKHQWCSQAVGLSEFTN"
XX
SQ   Sequence 4241 BP; 1463 A; 707 C; 905 G; 1162 T; 4 other;
     ataggttatg ggcccaggaa caatttacaa gagatttgtg aagtttttat accagtaaag        60
     tgttgcaaaa aatcacgatc ggcagtagtg cgtcgagaaa gttttgcgtt gctactatcg       120
     taaatttttt tgcgtatgtt cagtgtgacg gtggcgtatt ttttctgttc aagaaaactg       180
     cagtaaatat tccctgaact acctgaacat atctaaaatg gctttggctg gacaatcact       240
     ttttaatttt gaaaagttga ctggaatgtc gaattacaat gattggaaat ttacaatcga       300
     aatgtatctg aaacatgaag gactgtggaa tacaattgcc ggtactgata ctgattccaa       360
     taatgtacag aaagcattgt ccaaaatatg tttatctgta agttcatctg tttatccaaa       420
     agttcgtgga gctacgactg ctaaagaagc atgggagaat ttacagtcgg cattcgaaga       480
     taaaagttta tctagttata tcggactgct acagtgtctg atgaatgtgc gactcaattc       540
     tgaaaaagat atggaaacat atttgtcaaa aattatgtcg cttgctcaac aaattcgaag       600
     tattggcaag aaaatagatg atgattttgt agcagcaatt atgctcagtg gactaccttc       660
     agatttccag cctttaatta tggcaattga aaattcaggt gttagtatta ctagcgattt       720
     tgtaagtcag cggcttattc aagaatcaac aaaacgtcaa tttgcttcga cgaatggaaa       780
     tcaagattcg gcgctagcag ctggaaaaca gagatatacg caacamaaat caaacagcaa       840
     tcgtgatact aaaaatatga aagctataaa atgctataaa tgtcagagaa ttggacataa       900
     ggcgaatgag tgtcaaacta ggaagaaatc aaatatttca aaaagttctg caaactctgt       960
     gaaatcggaa gacgaaaatg ttttgatggc ccttactaca tcttcgtcgt atagtgacgg      1020
     ttggtatgtt gattcaggat gtacaaggca catgacgaat aaagaagact ggcttaataa      1080
     tttcgaatcg accacagcta caaatgttac agtagcagat aacagcaacc ttcaggcgat      1140
     tgcagaaggc agtgttcgtc ttgagctcac tagtgatgaa gcaaataaac cagtaacgat      1200
     taaagatgtt gcatatgttc caggccttgc atacaattta ctgtcagtga gtcaaacgac      1260
     aagacatggt ttgtgtgtgt tatttaatga cgtacagtgc gggatatata acaagaaaga      1320
     tgtactcatc tctggaacac ctgtagcgac tgcaactcag gtaggtggca tgtatcgatt      1380
     aaatgaaatt cgacattgtg caaatgctgt agacactgac aattatgatt tgtggcaccg      1440
     aagattggga catttgaatc gtgtaagcat gcgtttgcta aaggaaaaaa tggctgatgg      1500
     acttaattgg actaacataa atttagatcc atgtatctct tgcattaaag gcaaacaatc      1560
     tcgccaatct tttccaaaaa catcaagtag aagagctgaa ggtctgcttg atattgtata      1620
     ttccgatgta tgtggaccta tgagcatggc ttcgtgggga ggagcacgtt atcttctcac      1680
     gtttacagat gatatgtcac gaaagtcatt cggttatatg ttaaaatcaa caaaagaagt      1740
     ttatgatatt tttattgaat tcaaagcacg agttgaaaat gaaactggtc gaaaaattcg      1800
     aatacttcac acggacaatg gaaaggaata tataaatgag cgtatgaaga cattcttaaa      1860
     agcaaatggt attcgacatg aaacaacagt tccttataca ccgcaacaaa atggtgttgc      1920
     tgagcgtctg aatcggacaa tcattgagaa ggcaagatcg atgttgacag atgcaggact      1980
     aagcaaacaa tattgggctg aagctgttaa tactgcgatt tacctgaaaa atcgatctcc      2040
     tacgaaagct gtcaagaatg ttactcctga agaattgtgg agtggtcgtc gaataaatct      2100
     cagtcacttg cgaatctttg ggtgtcgagc atttgtccat gttccaaaag aaaagcgaac      2160
     aaaattagaa gataagtcga aggaacttat ttttgttgga tattgcgaag acagtaaagc      2220
     ataccgtcta attgacccaa attcaccaac aaaaattgtg aaagctcgtg atgtgcagtt      2280
     tattgaaaac tcaaaatgtc aatgtggcaa tgactgtatg aagaacatta agtctacagg      2340
     tgacaagcat ataaataatg gccctttgga cttaattaat gataactgta cagatatcat      2400
     acagccggca gctgtaccta atatcgttga tatgacagtt gaaccaacac aacccactga      2460
     tgataaaaat ttagttcagt ttgaaatgac gcaaagtgat gcagagcagg cagttaactg      2520
     taacttcgat caagatactg atcaacaaga tacaattccc atgcaaccag aaactagaaa      2580
     atcatcacgc caaaaatgtt taaaccccaa atacttcaat gatgattttg tttgtgttgc      2640
     tagaattcct gagccaaaat cgtttacgga agcaatgaca cgtgacgatt gggaaaagtg      2700
     gaaagaagca ttagatgaag aatataagtc tttacttgaa aatgagacat ggactttaac      2760
     tgatttacct ccaggcagaa agacaatcaa ttctaaatgg gttttcaaag tcaaagaaac      2820
     agcaaacggt gacattgagc gttataaagc tcgttttgta gcaaaakgct attctcaaat      2880
     accaggagta gattttkatg agacattttc gtctgttgtt cgtcattctt cacttcgcac      2940
     actgttggct ttagcagcta aacttgatct cgacattgaa catatggatg ttcgaactgc      3000
     attcttgtat ggagatctaa atgaagaaat ttacattcgt caacctgaag gtacgtgaga      3060
     agggggagga ggcgaaggtt tgcaaactaa aaaaagcaat ctatggtctg aaacaggctc      3120
     cacgcgtttg gtatcagaag ttagatacaa cgctacgtaa atgaacttaa aaaagtctga      3180
     atatgagcag tgcatctact acagaattga gaaagaaaat gtactcattg tagctgttta      3240
     tgtagatgat ctcatcattt ttcaaacaga agtaataaat acaaacaaga actgaagaca      3300
     gaactaatga atcgctttaa gatgagagat cttggcgagc taagttggtg tcttggcatg      3360
     agagtaaaac gagacagaaa acagggcaca attaccattg atcaaagtaa atatgcagca      3420
     aatatactca agaaatttgg aatggaagat tgtaatccag ttgcatatcc aattgaacct      3480
     ggtttgaaac tacaaaaatg tgaagaaaaa ctgacagaag aagaagaatt ggcattaaaa      3540
     cgcattccat atcagcaagc tgttggttct cttctgtatt tgtctcaagg cacaagacca      3600
     gacattgctt atgctgtggg ggttgtaagc agatttaact ccagttatag aaaaatccac      3660
     tgggaagctg taaaacgaat tctgagatat attaaaggta caatcaatac aggattgatt      3720
     ttcaaaagaa stggatcaac aaaagttgaa gggttctgtg atgcagatta tgcttcagag      3780
     ctcgatcaaa ggcgatcgac gacgggctac gtttttaagc tagcaggagc agcagtgtcg      3840
     tggaacacaa agttgcaaca aacagtggct ctgtcaacaa cagaggctga gtacatggct      3900
     ctgtcaactg cagcacaaga agcaatgtac cttcaaggat tactcagtga attatgtgtt      3960
     aagcacagtg agaagccagt gagtgtattc tgtgataata gaggcgctgt tgcactcagt      4020
     cacaatggtg tgtatcatgc tcgcactaaa catatcgacg taagacacca ctacattcgt      4080
     gagttgatta atgcaggtaa gctcactgta aagtcaatta gtactgacaa gcaagaagct      4140
     gattttttga caaaagcact ccctaaagtc aaacatcagt ggtgtagcca agctgtggga      4200
     ctttctgagt tcacaaattg acatcttgcg aacttgtggg g                          4241
//
ID   Copia-11_LMi-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-11_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-226
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3094-3094 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 226 BP; 57 A; 28 C; 40 G; 101 T; 0 other;
     tgttgggaac aaatgtgtta ttttttatct tgtgctgtca gaaacactgt gtgacagttt        60
     tttttattct gagttgtttt tatctttgga tttttaattc tcttgtaata gcttccatga       120
     ataaatagtt tattgtctgt gttcctggta atatggtgta cacgttttta atttcgtaat       180
     aagtaacttt aaatctcttg agacgactaa ttggagtcaa tatcca                      226
//
ID   Copia-11_SI-I repbase;    DNA;    INV; 4012 BP.
XX
AC   AEAQ01016250;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_SI_;
KW   Copia-11_SI-LTR; Copia-11_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4012
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01016250; Positions    5106    1095.
XX
CC   Positions [1500-2006] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           900..3983
FT                 /product="Copia-11_SI-I_1p"
FT                 /translation="MQIQDSWLADSRATHHMTHRREWMYDFESITKGQFGV
FT                 TVGNDQIIYALGRGSIDIIATIDGQKVQHKLCNVLFVPDIGKNLLSVGAAA
FT                 DNGVEARLSKTGIKLMSKNGIIAYGTRVAHSLYSMDFETVVNTSANVASVA
FT                 ANEQVWHERYGHVNYKAIRRMVKNPAVDGMQMIGKSNTDEETDQFCEACIF
FT                 GKHSRKSFNDSKTRADELGALIHFDICGPMSIESFGGARFMALFVDDYTGM
FT                 VFVYSMKSKADIVNCMKDVIAEANAVGHKIRRVRSDNAKEFIGKDMKKVLR
FT                 EHSILQETSTVYCPEQNGRAERQNRTIVEMARTMIAGVELPKGLWGEAVHT
FT                 AAYIRNLVPLERLDGKTPMELWTGKRPNVSHLRIIGSKAYTLTNEKQSKFE
FT                 KKSQELILVGYVPKQKAYRVWKRGTRKVVVSRDVIIVESKPKQQAAIVRTT
FT                 EDNNDGSLDNNLQSENKRQSDLSAQTISKIETDEAESIDDKEVNTDNIANR
FT                 TRSKATLNIVTAASAFIADVHIPTTVEEAKLGSHKEQWESAMKSEYDSLVQ
FT                 NNTWTLVELPKDKRSIKNKWIFKLKTKIDGSIDRFKARLVIKGCSQKAGVD
FT                 YMETFSPVARHDSIRALLSIAAVKDYEIYQLDVKTAFLYGDLNETIFMDQP
FT                 ESFNDGSGRVCKLNKSLYGLKQAPRQWNKKFDKLMQRFGLKSSNADPCVYT
FT                 STDLCVALYVDDGLVIGHTKSKIDKLLEVIQSNFEITSSIATCYLGIEFML
FT                 DRKLRTIKLSQTAYTKSVLKKFGMLECNGVTVPADPDVQLKRNLNDDGKTG
FT                 EIADVPYRQLIGSLMYLSVGTRPDISYAVSILSKFLEAPSREHWTAAKRIL
FT                 KYLKSTPNLGIVYNGMTSKPNQLIAYSDADYASCLDTRKSTSGVILMLNDG
FT                 PIIWSSRKQSIVATSTTDAEYVAAHDATKEVVWSRQLLKDIGVEQFEPTTL
FT                 FCDNAAAQKLIENPIFHKRSKHVDIKFHYTRELVKQNQIKIQHVATQSQLA
FT                 DILTKPLARGKFEINRNQLNLM"
XX
SQ   Sequence 4012 BP; 1326 A; 774 C; 933 G; 979 T; 0 other;
     ggttatgggc ccaggctcac gtgcaagtgt ataaaatctt acagtctctc gtgtctttaa        60
     taaaaagagg atagttttct ccgagtcaca agatgaccac ggaagatttg aggttaactc       120
     cgttgaccaa agatagttat cagcgttgga agtacgaggt acgttcctgt ctgaaaagca       180
     ttggtgcaac tggtcatgtt gacggtatgg taaagtaccc aacggggtca ggcagcgaga       240
     aagacgccga aacatggatt aagatggatg gtaaggcaca gcgggtgcta acctgtgctc       300
     tttccgacga cgaccacgca gcaattcgag actgtgatac ttcgcgggat gtctggttaa       360
     aaattcagtc gatttacgag acaaaatcga acgaaaataa gtatctgcta aaccaagagt       420
     ttcatcgaat gcgtttcaat gaagatcaga gcgttacaaa ctattgtgct caattagcag       480
     taatttgtca gaaattaaaa gcagccggcg aggaactctc cgattcaggt ttgattgcta       540
     aattagttaa tgatttgcct tcaagatttg acaatttcag gtcaaattac tacatacaag       600
     cagcctccgg aacgacgctt acgtttgaca aattaaagga acagctcatg ctgattgagg       660
     ctaatgtatc tagtgctgct gctaatacag atactggtga tgctttaata acgcaagcaa       720
     aagaacggaa ctcaaaggcg aagcgagaac aacgggcatg ttttcattgc aagaagattg       780
     gacacgtcaa acgtgattgt cgaaaataga aatctgagca agctaaagaa caaggaaaat       840
     caacagcctc agtagcttca ggtcaagcat ttgtaacagc aagtggatac gctcgcaaca       900
     tgcaaataca ggacagctgg cttgccgact caagagcaac acatcatatg actcatcgac       960
     gcgaatggat gtacgatttt gaatcgatta caaaaggaca gtttggagta actgttggaa      1020
     atgatcaaat tatttacgca ctcggacgag gaagtatcga catcatcgca acgattgatg      1080
     gtcaaaaggt acaacataaa ttatgtaacg ttttgtttgt acccgatata ggcaaaaatt      1140
     tactgagcgt gggcgcagca gctgacaatg gtgttgaggc tcgactaagc aaaactggta      1200
     ttaagttgat gtctaaaaat ggaatcatag cgtatggaac gcgtgtagca catagtcttt      1260
     actcaatgga ttttgagact gttgtcaata cgtcagcaaa tgtagcttcg gtagcggcca      1320
     acgaacaggt atggcacgaa aggtatggcc atgttaatta taaggcaatt cgacgaatgg      1380
     ttaaaaaccc agcagtcgat ggcatgcaga tgattggtaa atcaaacaca gacgaggaaa      1440
     ctgatcagtt ttgtgaagcg tgcatttttg gcaagcatag tcgaaaatcg ttcaatgact      1500
     caaaaactcg agccgacgaa cttggtgcac tcatacattt tgatatctgt ggcccgatgt      1560
     caattgaatc gttcggtgga gctcgattca tggcactttt tgttgacgat tacacaggaa      1620
     tggtatttgt gtattcaatg aagtcaaagg ctgacatcgt taactgtatg aaggatgtca      1680
     tcgctgaagc taatgcagtt ggacacaaga ttagacgagt acgttcggac aacgcaaaag      1740
     aattcattgg aaaggacatg aagaaggtac ttcgagagca ttccatcctc caggagacat      1800
     caacggtgta ttgtccagag cagaacggtc gtgcagaacg tcagaacaga actatagtcg      1860
     aaatggcacg aacaatgata gctggagttg aattaccaaa aggactatgg ggtgaagcag      1920
     tacacacagc cgcttatatt cgaaatcttg ttccactgga gagattagat ggcaaaactc      1980
     cgatggaatt gtggaccggt aaaaggccaa acgtctcaca tctgcgcatc ataggtagta      2040
     aggcatacac gctgactaac gagaagcaat cgaagttcga gaagaaaagt caagaattga      2100
     tattagtcgg atacgtgcca aagcaaaagg cctaccgtgt ttggaaacgc ggaactcgga      2160
     aggttgttgt aagtcgcgat gtaatcattg ttgagtctaa acctaagcaa caagctgcta      2220
     ttgtgcgaac gacagaagac aataatgatg gctcattgga caataattta cagagcgaga      2280
     ataaaagaca gtccgatttg tcagcacaaa caattagcaa aattgaaact gacgaagctg      2340
     agtctattga tgataaggaa gttaataccg acaacatcgc gaaccgcaca cgcagcaagg      2400
     ctaccctgaa cattgttacc gcagcaagtg cctttatagc agatgttcat attccaacta      2460
     cagttgaaga agcaaagttg ggaagtcaca aggaacagtg ggagtcagca atgaagagcg      2520
     aatatgattc tcttgttcaa aataacactt ggacattggt cgagttacca aaggataaaa      2580
     ggtcaatcaa gaataagtgg atcttcaaac tgaagacaaa aattgacgga tcgattgatc      2640
     gttttaaagc acgcctcgta ataaaaggat gttcgcagaa agccggagtt gattatatgg      2700
     agaccttctc accagtcgca agacacgatt ccattcgtgc attgctgtca attgcagcgg      2760
     tcaaggacta tgaaatctat caactggatg tcaaaacggc gttcctgtat ggggatttaa      2820
     acgaaactat ttttatggat caaccggaaa gttttaacga cggctcaggt cgagtatgca      2880
     agctgaataa aagcctgtac ggtctcaaac aggcacctag acaatggaat aaaaaatttg      2940
     acaagctcat gcaacgattt ggtctaaaat cttcaaacgc agatccatgt gtgtatacaa      3000
     gcactgattt atgtgtagca ctgtacgttg atgatggcct agtgattggt catacaaagt      3060
     caaaaattga taagctgtta gaagtaatac agagcaactt tgaaattaca agctcaattg      3120
     caacatgcta tttaggcata gaattcatgc ttgatcgtaa gctgagaaca attaaattgt      3180
     cacagacagc ctacacgaaa tctgtactca agaagttcgg tatgttggag tgcaatggcg      3240
     taactgtgcc tgctgatcca gacgttcaat taaagcgcaa cttgaacgat gacggaaaaa      3300
     ctggagaaat cgcagacgta ccctaccggc agttgattgg ctcacttatg tacctgtcag      3360
     tcggaacacg acctgacatt tcgtacgctg tcagtatttt gagcaagttt cttgaagcac      3420
     catcgaggga gcactggaca gcagcgaaga gaatcttaaa gtatttgaag tcaacgccca      3480
     acttggggat agtctacaat ggaatgactt ctaagcccaa tcaattgatt gcttattcag      3540
     atgccgacta cgcatcatgc ttggatacac gcaagagtac cagcggagtc atacttatgc      3600
     tgaacgacgg accaataata tggtcatcac gcaagcagag catcgtagca acatcgacaa      3660
     ctgacgcaga atatgtggcc gcccatgatg caactaagga agttgtctgg tcacgacaat      3720
     tactcaagga tattggagtc gaacaatttg aaccgactac tctcttttgt gacaacgcag      3780
     cagctcagaa gctaatcgaa aatcctattt tccacaagag gtcaaagcac gttgacataa      3840
     aattccacta tactagagaa ttggtcaaac aaaatcaaat caagattcaa cacgtggcaa      3900
     cacagtcgca actggccgac atcttaacga agcccttagc acggggaaaa tttgaaatta      3960
     atcgaaatca attaaatttg atgtaattgt tgactgttat ctcgagtggg ag              4012
//
ID   Copia-11_SI-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   AEAQ01016250;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-11_SI_;
KW   Copia-11_SI-I; Copia-11_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-189
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01016250; Positions    1094     906.
XX
SQ   Sequence 189 BP; 48 A; 49 C; 30 G; 62 T; 0 other;
     tgttaaggat agcgcgatct aacgtcacat ttggtagtca cgtagtacgc cctcctttct        60
     tttctttgtc tagcgcgcac gctctcttac tagagtcgtc tcccgccttt tgaaaagtat       120
     cactgtactc attatacaat aaagtatttc tttatacaac agcagtcgat tcatgcataa       180
     cctccaaca                                                               189
//
ID   Copia-120_AA-I repbase;    DNA;    INV; 4008 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-120_AA_;
KW   Copia-120_AA-LTR; Ty1_copia_Ele186; Copia-120_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4008
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1420-1944] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2038..2781,2785..4008)
FT                 /product="Copia-120_AA-I_1p"
FT                 /translation="MTFVGYASDSKAYRLLNTSTGQIVISRDVRFLELDDE
FT                 DKNVKDGTVRSLPGECPNEDEQVAVRLYDCGQNAGRCDDSQDEEEFFGFDE
FT                 DNDDPNEAVPVQEERVAVPVARDHLRRSQRENFGVPPGRYTDTIGLAVNTC
FT                 TEPSTYREAIESQDSEKWKAAMDEEMASLRDNETWTLTKAPQRGNVVGCKW
FT                 VFKCKPDESGKTVRYKARLVAQGFSQKYGTDYDQVFAPVVKQITFRTVPTI
FT                 ASKRQMLKHIDIKTAYLYGVLQEEIHMKQPPGYSNGDPNTVCLLKRSLYGL
FT                 KQAARVWNQRIDAALKSMGFHQSSADPCLYLRIANGMYSYILIYVDDIVVV
FT                 CRTEQEYQKLVAVLSKSFKIVELGDLTFFLGIHVRRDADRFFLNQKSYVRK
FT                 LLSRFNMVNCKASRVPMASGFVQQKEEDSDSLADGQQYQSLIGALLYIAVN
FT                 TRPDIAISTSILGRRVTKPTTADWNEAKRVLRYLKGTENYELHLGGGDNLQ
FT                 VECFVDADWAGEVDNRKSNTGYIFKFGGGLVGWGSRKQTCVSLSSTEAEYI
FT                 ALAECLQELQWVRRLVDDLGEQLALPIVVNEDNQSCIALVAADRISRKSKH
FT                 IDTKYCFVKDLASAGIVSIRYCPTEQMEADLLTKPLGAVKLQQLREAIGIL
FT                 PHDVEEE"
XX
SQ   Sequence 4008 BP; 1013 A; 908 C; 1249 G; 835 T; 3 other;
     acaggttatt ggcccagcaa acgtgacccg cggaattgag aagcgaagcc gttccagaaa        60
     atatagccca ggtgaggagt tcgctgtttt ttcccgaagc tgtctgaaga tggagtgggc       120
     gagaatcgtg aagctgamca actcgaacta ccaggcgtgg tcgttctccg tgaaagcgct       180
     gctgcggagg gagcagctgt ggaagcacgt ggacccaggt actcctccgg aaccggtgac       240
     ggacgcgtgg agcgatggcg atgagaggac gttggccacg attcacctga cggtggatga       300
     gagccagtac gcgctgattc gtggcaagac gacggcgaag gacacgtggg cggctctgaa       360
     ggcccaccac gagagggcca cgttggggca gcgggtgacc ctgctccgtc aaatcacgaa       420
     ccagaatttc aaggtaggtg acgacatgga ggcctacctg gcggtaattg agaagcagta       480
     tgcgcgtctc gaaaattccg gttttgagat gcaagagtgc ctcaaggtgg cgctgatact       540
     gcggggactt ccggagtcgt tcaatcccct gacgacggca ctggaagcgc ggaacgaaga       600
     tgagctcacc ctggacctcg tgaaggtaaa gctgctggat gaagcggaga agctacggaa       660
     acgatccggt tccgacgagc aagtgctgcg aaccggcgga acgagtgcgt cgcagaaaag       720
     tgtcgtctgc tatcactgcg gcaagccagg gcaccggaag cgaaattgta aggcgtacct       780
     ggcagagtgt ggcggaaatg cggatccgaa gagagaaaag gctaaggcca aaacagtgcg       840
     cgaaaacgac gcaaagtcgt tcacgtttat ggtgcggtcc ggtgagcatg atgcgagcgc       900
     gtgggtggtc gattcgggcg cgacgtcaca tttggcgaac aaccgcaatt cgtttgtgcg       960
     tctcgacgag agtgtgcgcc cggagatttc gaccgccggt ggtagagtgc tgcgtacggc      1020
     aggtgtcggg gactgtgaga tcgaatgcgt acggtcgaac aaaaagtgtc ggttacgttg      1080
     acggcgtttt gccccgcgcc gaaggacaat ttgatttcgg tgtcaaagct ggcagagaaa      1140
     ggtgtgcgcg cggaattcga tgcggagcaa tgccggctgg tgtcgaggga gtattgcgac      1200
     gctgatgcgt ggagtgtact ctgaacgttc gaagaatcgt tgttggtgag tgataagcag      1260
     cacaacacgg attgtttgca cacgtggcat cgacgactag gccaccgaga tccagatgcg      1320
     attggcgaag ttgagcggcg tggtttggct tctggaatga aaatcaagcc atgtggtatc      1380
     cggatgactt gtgagagttg cgtcgaaggg aagatggcac gtccgccgtt tccacaagca      1440
     gccgagaaga agtcgaaggc ggtgctagat atcgtgcaca gtgatgtatg cggtcctatg      1500
     acgacatcgc cgggcgggtg ccgatattat atgacgatga ttgacgacca cagccgctat      1560
     acggtcgtct attttttgaa ggagaagtcc gaggtcatcg aaaagatacg tgagtatgtc      1620
     aggttcaccg aaactcaatt cggaaggaag ccgaaggtca tccgttcaga ccggggtggc      1680
     gagtacacca gcaatgcgtt gcgtaagttt tacgcagagg aaggaatcaa ggcagaattc      1740
     accgctggtt acgctccaca gcagaacggc gtggctgaaa ggagaaacag aacgttaaac      1800
     gaaatgggtc tgtgtatgct gttggatgct ggcttacctc gtcgtttctg ggcggaagca      1860
     gtgaacaccg ctgcttatmt tcagaaccgg ttgccgtcat cagcgatcgg atcgactccg      1920
     cacgagatct ggttcggtac gaaaccggat ttgcaacatt tgaaggtgtt cggttgcagt      1980
     gcctacgtgt ggactccgcc acaaaagagg aagaagtttg aagagaaggc gaccaaaatg      2040
     accttcgtcg gatacgcgtc ggacagcaag gcttatcgtt tgctgaatac ctctactggc      2100
     caaatagtca tcagccgtga cgtgcgtttc ttggagctcg acgatgagga caagaacgtg      2160
     aaggatggaa ccgtccgtag tctaccaggt gagtgcccga acgaagacga acaggttgca      2220
     gttcgactgt acgattgtgg ccagaatgcg ggaagatgcg atgattctca agatgaagaa      2280
     gaatttttcg gattcgatga agacaacgat gaccccaacg aggcagtacc agtacaggag      2340
     gagcgcgttg ccgttccagt tgctcgtgat catctgcggc gctcgcagag ggaaaatttc      2400
     ggtgtacccc cagggcggta taccgacaca attggcctgg ctgtgaacac gtgtactgag      2460
     ccaagtacat atcgagaagc gattgagagc caggacagcg aaaagtggaa agcagccatg      2520
     gacgaggaga tggcatctct acgagacaac gagacgtgga cccttacaaa ggcgccccaa      2580
     cggggcaacg ttgttggctg caagtgggta ttcaagtgta aaccggacga atcggggaaa      2640
     actgtacgat acaaggccag gttggtcgca cagggttttt cccaaaaata cggaactgat      2700
     tacgatcagg tgtttgctcc ggtggtgaag caaatcacat tccgtactgt gccgacaata      2760
     gcaagcaaac ggcaaatgct cgwcaagcac attgatatca agaccgcgta tctgtatggc      2820
     gtgctgcagg aggagatcca catgaagcag cctcctgggt actcgaatgg tgatccgaat      2880
     accgtgtgtc tcttgaagcg aagcctctac ggactcaagc aggctgcacg ggtatggaac      2940
     cagcggatcg atgcggcgtt gaagagcatg ggattccatc aatcttcggc tgatccgtgc      3000
     ctctatttgc ggatcgcgaa tggcatgtac tcgtacatat tgatctatgt ggacgatatc      3060
     gttgtcgtgt gcagaacgga acaagaatac cagaagctgg tcgcggtttt gagcaagagc      3120
     ttcaagattg tcgagttagg tgacttgacg ttctttctgg gaatccacgt tcgacgcgat      3180
     gctgaccgat tcttccttaa tcagaagtcg tacgtgagga agcttctatc gcggttcaac      3240
     atggtgaact gcaaagcgtc ccgggttccg atggccagcg gatttgttca acaaaaggag      3300
     gaggatagcg actcattggc agatggacaa cagtaccaaa gtttgatcgg tgctttgttg      3360
     tacatcgctg tcaatacgcg cccggacatt gcaatctcga cttcgatact cgggcgtcgg      3420
     gttacgaaac caaccacggc ggattggaac gaggcaaagc gggtgctacg ttacctcaaa      3480
     ggcaccgaga attacgagct ccatctgggt ggtggtgata accttcaagt ggagtgcttc      3540
     gtggatgcag actgggctgg cgaagtagac aacaggaagt ccaacactgg ctatattttc      3600
     aagttcggtg gcggactcgt tggctgggga agcaggaagc aaacgtgcgt gtccctgtcc      3660
     agcactgaag cggagtacat cgctctagcg gaatgcttgc aagagctgca gtgggtacgt      3720
     cgactggtag acgacttggg cgagcaactg gcgttgccca tagtggtcaa tgaagacaac      3780
     cagagctgca ttgcactcgt agcggcggat aggatctccc ggaaatccaa acacatcgac      3840
     accaagtact gctttgtgaa ggatttggca tcagctggta tcgtatccat tcggtactgt      3900
     cctacggagc agatggaagc ggatcttctt accaagcctt tgggagcggt gaagctacaa      3960
     caactgcgag aagccatagg gattctacca catgatgttg aggaggag                   4008
//
ID   Copia-120_AA-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-120_AA_;
KW   Ty1_copia_Ele186; Copia-120_AA-I; Copia-120_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 185 BP; 54 A; 42 C; 30 G; 59 T; 0 other;
     tgttgaagca atcgaagcaa tcattgatat attcaacatc attgcgttgc tatgtaactt        60
     ccatagcaac cacccttgta gatacgagcc tgaataaatt ttcattagta gttcgaccat       120
     taactagaac acgtgtcaag ttattttctc ccggaaaagt cttttccctg cggcttgaat       180
     ctcca                                                                   185
//
ID   Copia-121_AA-I repbase;    DNA;    INV; 3932 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-121_AA_;
KW   Copia-121_AA-LTR; Ty1_copia_Ele105; Copia-121_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3932
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1364-1867] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           8..3931
FT                 /product="Copia-121_AA-I_1p"
FT                 /translation="MGSSKEGIPQLTGPNYENWRFRVKLHMDAVEVSSVLS
FT                 EPAPAVGDAGRAKWEQTDRKAKSVLVGFVADEILEVVREKETASEMWKALE
FT                 ETFAKRSVSSQTLLRKQLARLRKKEGTSMRAHFNVFDDLVRQLKSAGAKLE
FT                 EGDLVCQLFLTLPDSYDPLVTALENLAEKDLKLETVKQRLLAEESKREDRL
FT                 DDSSEDNGAAFVGGKKKNQKKFTGKCHRCGKLGHMKKDCRSKKLEGNANAA
FT                 VGSKAVAFMANGDQTKSEAGKIHFCVDSGCSDHLVNDAKHLRSMRKLKDPF
FT                 VIDVAENDVTLVGKFAGDIKGMSNKGIEFQIKNVVLLPDLRENLLSVKKLS
FT                 QAGIDVLFTGRGGQDRAEFKKNGELIGVAYLRGNLYQLELDVGSVANISVA
FT                 GMSKLWHRRMGHASQQALNTLVKHEMATGFTKKLETIGFCDTCVMAKQCRE
FT                 SFDGVRERATRPLERVHSDVCGPIDPPAWDGSRYFVSFIDDWTHFAVIYPI
FT                 KRKSEVYRCFKEYEAMATTQWQTRICKFTVDQGREFFSNEQRSYYKKRGIQ
FT                 VQPTVAYSPQQNGVAERFNRTLVEKVRSMLIDSKAPKNLWSEAALTATYLL
FT                 NRCPTVAVPENVTPAERWTNAKPNLDKIRIFGCKAMAWIPSQQRKKLDPKS
FT                 RETVMIGYAPNGYRLWDRASRKIIIARDVKFNEECFPYAEQTDESSQVPLV
FT                 VPTLYEPEGELLNNPGEEEPHTDVVDHESDEETIFEEVEEEANPGALPSQH
FT                 RGDGCSESNTRRSERERRLPGKFFDFLTGFRAISAADNSDSSDPPSSYEEI
FT                 DGRNDRDCWLAAVRDELRSMDTNQVWRLVKRPSGVKPLQPKWVFCVKEDAD
FT                 GNVVRHKARLVVKGFLQKSGIDYQETYAPVAKLTTIRVALAVALQRGMVIH
FT                 QMDVQTAFLHGELQETIYMAIPEGVEADAETVCLLKKSLYGLKQAPKCWNE
FT                 KLNQVLLKLGFKRSKHDYCVYTRIDERGNDDVYIVIYVDDLLIMGVRAKTV
FT                 DDIKKKLSQFFKMTDCGELQHFLGMKIAYDRVLGTMCLSQEASIEKVLKKF
FT                 GMDDCNPTKTPMEKGLQLTRSNTGMIGEPYRELLGSLMYIMMSTRPDVCFP
FT                 VGFLGRFQQQPEQQHWTALKRVVRYMKGTKNICLEYSRNKEAEPLVGFADA
FT                 DWATDTVDRKSVSGFLFQVYGNTISWSSKKQTTVATSSSEAEYIALSAGVA
FT                 ESIWISGLLTDLGVKMTKPVTIYEDNRGCIGMAQNLECKRAKHIDIKHHFI
FT                 RDHIAAGRIRVEPVCTDRQLADIFTKALDIARFENLRRTIGLHNREG"
XX
SQ   Sequence 3932 BP; 1147 A; 803 C; 1095 G; 887 T; 0 other;
     ataggttatg ggctcgtcaa aggaaggaat cccgcagctg accggaccga attacgagaa        60
     ttggcgcttc cgggtcaagc ttcacatgga tgcagtggaa gtatcgtccg tgttgtcgga       120
     accagctccg gctgtaggcg atgcaggtcg tgcaaaatgg gagcaaacgg acaggaaggc       180
     taaatcggtg ctggtgggat tcgtggcgga tgaaattctt gaagttgtcc gggaaaagga       240
     aacggcgtct gaaatgtgga aggctctgga agaaaccttt gcgaagcggt cagtttcaag       300
     ccaaacgttg ctgaggaaac aattggcccg tttacgtaag aaggagggaa cttcaatgcg       360
     agctcatttc aatgtattcg atgaccttgt ccggcaactc aagtccgcag gagccaaact       420
     ggaggaaggt gatttggtat gtcaattatt cttaaccctg cccgatagtt atgacccctt       480
     ggtgacggca ctcgagaatc tggcggagaa ggacctgaag ctagagacag tcaagcagcg       540
     gctgctggct gaagaaagca agcgtgaaga ccgtctggat gactcgagtg aagacaacgg       600
     ggcagcgttc gttggtggca agaagaagaa ccagaagaag tttactggca agtgccatcg       660
     gtgtggaaaa cttggccaca tgaagaagga ctgtcggtca aagaagctgg aaggtaacgc       720
     aaatgcagca gtcggcagta aggcggtcgc attcatggca aacggtgacc agacgaagtc       780
     tgaagcaggg aagatccact tttgcgtaga ctcgggatgc agtgatcatc tcgtgaatga       840
     tgcaaaacat ctgcgatcca tgcggaaatt gaaggatccc ttcgtaatcg atgtagccga       900
     gaatgatgtg acactcgtcg ggaagttcgc aggagatata aaaggtatgt ccaacaaagg       960
     aattgaattt cagataaaaa atgttgtgct cctgccggat ctccgagaaa acctgctctc      1020
     ggtgaagaag ctctcgcagg ctggaatcga tgttctattc actggtcgtg gaggtcaaga      1080
     tcgtgcggag ttcaagaaaa atggagagct tattggcgtg gcataccttc gcggaaactt      1140
     gtaccaactg gaattggatg tcggatctgt agctaatatc agcgtggctg ggatgagcaa      1200
     gttgtggcat cgtcgtatgg gacatgcaag tcagcaagca ttgaacactc tcgttaagca      1260
     tgaaatggcc acggggttta cgaagaagct tgaaacaatt ggtttttgcg atacatgcgt      1320
     gatggccaag cagtgccggg aatcattcga tggagttcga gaacgtgcca cacgtccact      1380
     ggaacgagtt cattcagacg tgtgtggccc tattgatcca ccggcctggg acggatcgcg      1440
     gtacttcgta tcgttcatag acgactggac gcattttgct gtaatctatc caatcaagcg      1500
     caagtctgag gtataccgat gttttaagga gtatgaagcg atggctacaa ctcaatggca      1560
     gacaagaata tgcaagttta ctgtggacca aggccgggaa ttcttttcca acgaacaaag      1620
     aagctactac aagaagcgag gcattcaggt acaacccaca gtagcttatt cccctcaaca      1680
     aaatggagta gctgaacggt tcaaccgaac tttggtggag aaggtaagat caatgctcat      1740
     tgattcaaaa gctccgaaga acctgtggtc agaggcggca ctgactgcga cgtacctcct      1800
     gaaccgttgt ccgacggtgg cagtgcctga aaacgttact cctgcagaaa gatggacgaa      1860
     tgcaaaaccg aaccttgaca agataaggat tttcggatgc aaggccatgg cgtggatccc      1920
     gagccaacaa aggaagaaat tggaccccaa aagccgtgag acggtgatga ttggatacgc      1980
     tccaaacgga taccggcttt gggacagagc atcaagaaaa ataataatag cgagagacgt      2040
     gaagttcaac gaagaatgtt ttccatacgc agagcaaact gatgaatcaa gtcaagttcc      2100
     gttggtagtc cccacgctat acgagccaga gggggagctg ttgaataatc ctggtgaaga      2160
     ggaaccacat actgatgttg tcgatcatga atctgatgaa gaaaccatat ttgaagaagt      2220
     tgaagaggaa gcaaatcctg gggcgctccc ttcgcaacat agaggtgacg gctgttcaga      2280
     gtcaaacacc aggcgcagcg aacgggagcg caggctccca ggtaagtttt tcgatttttt      2340
     aactggattc agagcaatct ctgctgctga caattccgat tcttcagatc cgccgtcctc      2400
     ctatgaggag atcgatggac gcaatgatcg agactgttgg ttggcggctg tccgggacga      2460
     gctgcgttcg atggatacca accaggtgtg gcgactagtg aagcgaccct ccggagtgaa      2520
     accattgcag ccaaaatggg tattctgcgt taaagaagat gctgatggaa atgtcgttag      2580
     gcataaggca agattggtcg taaagggctt tcttcaaaaa tctggcatcg attatcaaga      2640
     aacctatgcg ccggtagcca aactgacgac gattcgagtg gcattagctg tggcgctgca      2700
     aagaggcatg gttatacacc aaatggatgt gcagacggcc ttcctgcatg gtgagctgca      2760
     agagacaatt tatatggcaa tacccgaagg tgtcgaagcg gatgctgaaa cagtctgcct      2820
     gttgaaaaaa tcgttatatg gtctgaaaca agctccgaag tgctggaacg agaaattgaa      2880
     tcaggtacta ttgaagcttg ggttcaagag atcgaagcat gactattgtg tatatacccg      2940
     catcgacgag agggggaacg atgatgtcta cattgtcata tacgtcgatg atttgctaat      3000
     catgggagta cgcgccaaaa cggtggacga tatcaaaaag aagttatccc agttcttcaa      3060
     gatgactgat tgtggtgagt tacaacactt ccttgggatg aagatcgcct atgaccgagt      3120
     attgggaaca atgtgccttt cgcaagaagc tagtattgaa aaagttttga agaaattcgg      3180
     tatggatgat tgcaatccaa caaaaactcc catggagaag gggctacagc tgacacgaag      3240
     caataccgga atgattggcg aaccgtatcg tgaacttctc ggaagcttaa tgtatataat      3300
     gatgtcaact cgaccggatg tttgtttccc agtaggattt cttggacgtt ttcagcaaca      3360
     accagaacag caacactgga cggccttgaa acgagtagta cgatacatga aagggaccaa      3420
     gaacatatgt ttggaatact ctcgaaataa ggaagcggaa cctttggtcg gatttgctga      3480
     tgcggactgg gcgacggata cagtggacag aaaatcggtg agtggattct tgttccaggt      3540
     ttatggcaat acgatctcct ggtcaagcaa gaaacaaacg actgtggcca cctcgtccag      3600
     tgaagccgag tatatagcgt tgagcgcagg tgtggcagaa tcgatttgga tatctggact      3660
     cttaactgat cttggagtaa agatgacgaa gccggtgacc atctatgagg acaaccgtgg      3720
     ttgcataggg atggcccaaa acctggagtg caaacgggca aagcatattg atattaaaca      3780
     tcattttatt cgcgaccaca ttgcagccgg acgcattcgg gtggaaccgg tttgcacaga      3840
     caggcagtta gcagatattt ttacaaaagc gttggacatt gcaagatttg aaaacctacg      3900
     acgaaccatt ggactccaca atcgagaggg gg                                    3932
//
ID   Copia-121_AA-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-121_AA_;
KW   Copia-121_AA-I; Copia-121_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-170
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 170 BP; 47 A; 39 C; 32 G; 52 T; 0 other;
     tgaagaagta ggccttgctg agcaagccat gaaatactga caagcgctag tggagttcat        60
     tacgaatcaa gccttcaaac tgtatagacc attctctcct aataaacgtt ctttagttgt       120
     ttgagattga gtctttctct tggcccatcc gcccagtcct taatattaca                  170
//
ID   Copia-122_AA-I repbase;    DNA;    INV; 4095 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-122_AA_;
KW   Copia-122_AA-LTR; Ty1_copia_Ele101; Copia-122_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4095
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1472-2011] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..2356
FT                 /product="Copia-122_AA-I_2p"
FT                 /translation="MEKEDFVRVPLFDGSNYPAWKYRMQVVLEEHDLIDCI
FT                 EREMAEMDELEVKPEDNDAAQRAKAKEAEKRKKQERRCKSLLISRIHDSQL
FT                 EYVQDHQTPKAIWLALQRVFERKSVASRLHLKRKMLTLRHEGGSLSEHFLI
FT                 FDKIVREYKSTGAQLDDLDVVCHLLLTLGSSFATVVTALETMPEDTLTLEF
FT                 VKCRLLDEEIKQQGGGVKASSEPAAFAGSSGKQRQRQQQQKKKWKCFGCQQ
FT                 EGHKISECPEKNKKKNKDSKKSSAYFGEDGGGVCFLSGQSLPNKQQVAWVV
FT                 DSGSSEHLTNDRALFHQLTPMQDPMTIAVAKEGESIVAKHQGEVRLFSVVH
FT                 GKSIPVCLKNVLYIPDARVNLLSVRKMEMAGLKVTFADGKVVVLRGSEVVA
FT                 VGERRGKLYELNFSKSDCANDSSFYSCGRVPKELETWHRRFGHLSASGLEQ
FT                 LVRNEMVVGLKANVRKGSEEIICESCVAGKQTRRPFITGEGRQSRRVLELI
FT                 HSDVCGPVTPVGVGGEKYFVTFIDDWSRFTVVFLISSKDQVLGAFRNYVAA
FT                 VSAKFGSKISRLRCDNGGEFKNGAFLNFCKQKGIQVEFTVPYTPEQNGVSE
FT                 RKNRTLVEMARAMLEDSEADRRFWGAAIQTAAYLTNRSPSRALDPKVTPFE
FT                 IWEGRKPNVEKFRAFGVDVHVHIPKEHRQKLDAKSWKGVFVGYSPNGYRIW
FT                 DPKRKRIVVARDVIFVEEKVVGAKPPGQRTGGCSDGDVVRVPVGTDTRTQC
FT                 DESDTESDGRHGGAGSDRA"
FT   CDS           2359..4014
FT                 /product="Copia-122_AA-I_1p"
FT                 /translation="MAWPEEDSFDSCVDDTIREESEPEPVGHSRPVRNRSA
FT                 PAWHGDYELDMTGFALNAASFVEDLPCSIAEMRKRKDWPKWEVAVREEMDA
FT                 LSRNHTWDLVKLPEGRVPISCKWIFKVKRADDGRGDHYKARLVARGFTQRH
FT                 GFDYSETYSPTAKLDTLRTVLAVANHERMVIHQMDVKSAFLNGSIKEEIFM
FT                 TQPEGFNAGNGLVCRLNRSLYGLKQASRAWNERFHVFAEKLGFRRSSSDKC
FT                 LYIRESGGHKLFLIIYVDDVLLVGHQLKAIQVVKQCLSKEFEMKDIGEVNC
FT                 FLGMKIERKVEQRVLRISQRAFLERLLQRFNMSDCKPVSTPIENRLRLQRG
FT                 EESKRTDKPYRELVGCLVYVTLTTRPDLSAAVNFYSQFQSCPTEEHWRHLK
FT                 RVLRYIRGTLDLGLQFEGDDNAPVIEAYSDADWGNDTTDRRSLTGYVFRVY
FT                 GCTTSWLTRKQSTVSLSSTEAELIALCVAVCHGTWVMRLLEDLGIKPDGPV
FT                 VYHEDNQSAIRVVEEERDSGRLKHIDIKFCFVRDLIQRGLIAMRYVPRRIC
FT                 NRQIS"
XX
SQ   Sequence 4095 BP; 1046 A; 828 C; 1282 G; 938 T; 1 other;
     gtgctacgcg gaacgtgaaa tccgggtgtg aattgttgtg aaaacgatgg agaaagaaga        60
     ttttgtgcgg gtgcctttgt ttgacggcag caactatccg gcatggaagt accggatgca       120
     ggtggtgcta gaagagcacg atttaatcga ctgcatcgag cgggaaatgg ccgagatgga       180
     cgagctggaa gtcaaaccgg aagacaacga tgctgctcag cgggcgaagg caaaagaggc       240
     tgagaagcgg aagaagcagg agaggcgctg caaatctttg ttgatctcca ggattcacga       300
     cagccagctg gaatacgtgc aagatcacca gacaccgaaa gcaatttggt tggctctcca       360
     acgggtgttc gagcggaaga gtgtggccag ccggctgcat ttaaaacgga agatgcttac       420
     gttgcgccac gaaggtggat ccctaagtga gcatttcctg atcttcgata agattgtccg       480
     ggaatacaaa agtaccggtg cgcagctgga tgatctcgat gtggtttgcc atctcctctt       540
     gacgttgggg tcgtcttttg cgactgtcgt aacagctttg gaaaccatgc cggaggatac       600
     cttgacgctg gaatttgtca agtgcagatt gcttgacgag gaaatcaagc agcaaggtgg       660
     aggtgtgaag gccagctcgg agccggcagc gtttgctggt tcaagtggaa agcaacggca       720
     gcggcagcag cagcagaaga aaaagtggaa gtgttttgga tgccaacaag agggccacaa       780
     aataagtgag tgtccggaga agaataagaa gaagaacaaa gattcgaaga aaagcagtgc       840
     gtatttcgga gaagatgggg gtggtgtgtg ctttttgagt gggcaatctt tgccaaacaa       900
     gcagcaggtg gcatgggtcg ttgactccgg atcgtcggag catttgacaa acgatcgtgc       960
     gctgttccac cagcttactc cgatgcagga cccgatgacg attgctgtgg ccaaagaagg      1020
     cgaatctatt gttgcgaaac atcaaggtga ggtgagactg ttctccgtcg ttcatggtaa      1080
     gtcaatccca gtttgcctta agaatgtact ttacatacct gacgctcgag tgaatctgct      1140
     ttcggtgcgg aaaatggaaa tggcagggtt aaaagtgaca tttgcggatg ggaaagtggt      1200
     agttttgcgc ggatcagagg tagttgcggt tggtgaacga cggggcaaac tatatgaact      1260
     gaacttttcc aaaagtgact gcgcaaatga ttcgtccttc tattcgtgtg gccgggtgcc      1320
     aaaagaactg gaaacatggc acaggcgttt tggccatctg agtgcgagtg gattggagca      1380
     gcttgtgcga aacgagatgg tggttgggct aaaagcaaat gttcggaagg gtagcgaaga      1440
     gattatctgt gagtcttgtg ttgctgggaa gcagacccgg cggccgttca ttactggtga      1500
     gggtaggcag tcaaggagag tattggagct tatccactct gatgtctgtg gtcccgttac      1560
     tccggtgggc gtcggcggcg agaagtattt cgttactttt atcgacgact ggagtcgatt      1620
     cacagttgtg tttttgatta gctcaaagga ccaagttctc ggtgcgttcc gaaactatgt      1680
     tgcggcggtg tctgcaaagt ttggcagcaa gatttctcgt ttgcgatgcg acaacggtgg      1740
     agaatttaag aacggcgctt tcttgaactt ctgtaagcag aaaggtatac aggtcgagtt      1800
     cacggttcca tacacgccgg aacagaacgg ggtcagtgag cgcaaaaacc gaacgctggt      1860
     cgagatggcg cgtgccatgt tagaggattc cgaggccgac cgaagatttt ggggtgcagc      1920
     aatccagaca gcagcttatt tgaccaaccg tagcccttcg cgggcgctcg atccaaaagt      1980
     gacaccgttc gagatttggg aaggacgcaa accgaatgtg gagaagtttc gtgctttcgg      2040
     agttgatgtg cacgttcata ttccgaagga acatcgacag aaacttgatg ccaagtcgtg      2100
     gaaaggagtg ttcgtgggct attcccccaa cgggtacagg atctgggatc caaagaggaa      2160
     gcgcatcgtt gtggctcgag acgtgatttt cgtcgaagag aaggtagtcg gagccaagcc      2220
     gcccggtcag cgcactggcg gttgttctga cggtgatgtg gttcgtgtac cagttggtac      2280
     ggacacgcgg acacagtgcg atgaaagtga cacggaaagc gacgggcggc atggaggcgc      2340
     gggcagtgat cgggcataat ggcgtggcct gaggaagatt cgtttgacag ttgcgttgac      2400
     gacacgatcc gtgaagagag tgaaccggag ccggtggggc attcgcgtcc agtgcgaaat      2460
     cgttcagcgc cagcgtggca tggtgattac gagttagata tgactggatt cgccctgaat      2520
     gcggcgagct tcgtcgagga tttgccgtgt tccatagcgg aaatgcggaa acgcaaagac      2580
     tggccgaagt gggaagttgc ggttcgcgaa gaaatggacg ctttgagccg gaatcataca      2640
     tgggatttgg tgaagcttcc ggagggacgt gtgcccattt cctgcaagtg gatttttaag      2700
     gtgaagcgtg ctgacgacgg tcgtggagat cactacaagg cgaggctggt ggccagaggg      2760
     ttcacccagc gacatggatt cgactattcc gaaacgtatt cgccgactgc gaagctggat      2820
     acgttgcgca cggtgctggc agttgcgaat cacgagcgaa tggtaatcca tcaaatggat      2880
     gttaaaagtg cgttcctgaa cggatcaata aaggaggaaa ttttcatgac ccagccagaa      2940
     ggattcaatg cagggaacgg gctcgtgtgt cggctgaaca gatcgttgta cggcctcaag      3000
     caggcgtcga gggcgtggaa cgagaggttc catgttttcg ctgagaagtt ggggtttagg      3060
     agaagttcga gtgacaagtg cttatacata agagaatccg gtggacataa gctgttcctg      3120
     atcatatacg ttgatgacgt gctgttggtt ggacatcagc tgaaggcaat ccaggtagtg      3180
     aaacagtgct tatcgaagga atttgaaatg aaggacatcg gcgaagtgaa ctgtttcctg      3240
     ggcatgaaga ttgagagaaa ggttgagcaa agagttctgc ggatcagtca acgtgcattc      3300
     ctggagagac tactgcagcg gttcaacatg agtgactgca agcccgtatc aacaccaatc      3360
     gaaaaccgtt tacgcctgca gcgtggcgaa gagtcaaagc gcacagataa gccataccgt      3420
     gagttagtgg gatgtttggt ttatgtgact ttgacaaccc gaccggactt gagtgcggct      3480
     gtgaattttt acagccaatt tcagagctgc ccgacagagg agcattggcg gcatctgaaa      3540
     cgcgtattac gatacattcg tggtactttg gatttgggac tacaattcga aggcgacgac      3600
     aatgctccgg tgattgaagc atactccgat gctgactggg gcaacgatac cacggacagg      3660
     cgatcgttga ccggctatgt ttttcgagtc tacggatgta caacaagctg gttaacacgg      3720
     aagcaatcga ccgtttcgct ctcatcaacc gaggcagagc taattgcgtt gtgtgtggca      3780
     gtgtgtcatg gtacttgggt aatgcgtttg ttagaagatc ttggtatcaa accggatggt      3840
     ccagtagtkt accatgagga caatcaatcg gccatacgtg tggtggaaga agaaagagat      3900
     agtggccggc tgaagcacat tgacatcaag ttctgcttcg tacgagatct cattcagcgg      3960
     gggctgatcg cgatgcgata tgtgccaagg cgaatctgca accggcagat atcatgacta      4020
     aggggttacc agcgaagctg ttcctgcaac atcgcacggc tctggggatg cgagtttccg      4080
     gaaattgagc ggggg                                                       4095
//
ID   Copia-122_AA-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-122_AA_;
KW   Ty1_copia_Ele101; Copia-122_AA-I; Copia-122_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-206
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 206 BP; 53 A; 50 C; 28 G; 75 T; 0 other;
     tgttagaata ccaatttcct acccctctcc ttaataccac actggcgaac cccccttgat        60
     acgctcctga cattaaccat gtgttgttta cttttttcat tacacaactg tacttgagtg       120
     aaataaaacg tttatctttt ctttgcatta atcgcggtgt tacgttttat tccggtagag       180
     aaaacccgat tgcctaatat ttttca                                            206
//
ID   Copia-123_AA-I repbase;    DNA;    INV; 4056 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-123_AA_;
KW   Copia-123_AA-LTR; Ty1_copia_Ele112; Copia-123_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4056
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1470-1997] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4043
FT                 /product="Copia-123_AA-I_1p"
FT                 /translation="MADVKVSLEKLNDQNYSIWKFKMELLLVKEELLTFVT
FT                 DPKPDVPTADWSLKDGKTRAMIGLAVEDSQLVHIIRKKTAKEMWDALKQIH
FT                 EASSLSSTLHVLRKLCSLRLSEEGDLPGHLNEMTDLQNRLEVIGEGLKDRV
FT                 FMALILSSLPPSFGSLINVIENKPEQELTVDFVKSKLREEWRRRLECNGGS
FT                 VRGDEKVMQSVKSNKTNNKKKFVCHYCKEEGHFRNDCPKLAKTRQEKKKSA
FT                 DSKANLAAEVPDGMEMCLMAVTTSGANRWYLDSGATSHMTSDKNLLKDVNS
FT                 AKQPEICLADGKRIKSSGAGSGKLVSVTGDGVRMDVTLKDVYHVPSLSGNL
FT                 LSVSKICDLGYKVLFDRTGCEVIKDQKAVLVGERSGGLYRLKNYSQQAFVT
FT                 KAEHPDLCEHLWHRRFGHRNSEAISRIVREELGFGLKMKKCDIQCVCGICC
FT                 EGKMSRIPFPKESGSKSKAVGDLVHSDLGGPMEKATPSGFRYYMTMVDDYS
FT                 GYTVIYLLKAKSDTELKIREYCAMVKNQFGRAPRVIRTDGGGEYSSASLKA
FT                 YLAENGIIHQQTAPYSPQQNGKAERKNRYEVEMVRCLLAESGLDKKYWGEA
FT                 ICTANYLQNRLPTSAVEKTPYELWHGKKPSYSHLRTFGSEAYVHVPKEKRL
FT                 KLDKKAKKMIFVGYAEGRKAYRFLDPEKDWIAISRDAKFLETGVLKSERAA
FT                 ESEQSSPVQQSDSLEIKASAEEAEDKVVLSLGSETPNPGSLPEAVENPESE
FT                 EELEESDPSPEIARRSSRPNKGIAPRRLIEEIFAVGDVSFQDPTEPSGFKD
FT                 AMTGEKCAEWRRAMEAEMESHQVNGTWDLVKLPDGRKPVGCRWVYKLKRNA
FT                 AGDVVKYKARLVAQGFSQKFGQDYDEVFAPVTKQTTLRTLLAVASKKKLIL
FT                 KHFDVKTAYLYGELEEELYMKQPPGFEIKGKEALVCRLRRSIYGLKQSARC
FT                 WNHRLHSVLLELGFEQSTADPCFYTKVVNGKRVYLLIYVDDILVGSGSEAE
FT                 IKKIYEALKKEFEMTDLGDLNFFLGLEITRTEGNYGVSLEGYIDRVAERFG
FT                 LRDAKEAKTPMEEGFTKGKSEGPLLEDATKYRSLVGALLYIAVCARPDIAV
FT                 SASILGRSVSAPREEDWVAAKRVVRYLKATKDWRLQYGEPAGKLIGYSDAD
FT                 WAGDAKTRKSTTGNIFLFAGAAISWASRLQSCVTLSSMESEYVALSEASQE
FT                 AVWLRKLLEDFGEPQLEPVEISEDNQSCIKFVESERVSRRSKHIETREAYV
FT                 KELCDQRVLKLVYRPTEEMVADALTKPLGRIKLQKFSSMLGLVAGNR"
XX
SQ   Sequence 4056 BP; 1074 A; 806 C; 1256 G; 920 T; 0 other;
     ataggttatg agcccggtgt aacgcggaat ttgtgcggat ttgtggacat ttagtgaaga        60
     atcgatcggt gaagtgtttt ttttcgtggt acgaacattt tgcgtcgcga gtgaacaaaa       120
     tggcggatgt aaaagtgtcc ttggagaagc tgaacgacca gaactattcg atctggaagt       180
     tcaagatgga gcttcttctg gtgaaggaag agctgctgac ctttgtcacg gatcctaagc       240
     ctgatgtgcc gacggcggat tggtctttga aagacggaaa aactcgcgcg atgatcggct       300
     tggcagtgga agacagtcag ctagtgcata tcatccggaa gaagacagcc aaggaaatgt       360
     gggacgcgtt gaagcagatt cacgaggcat cgtctctgtc gtcaacactt cacgtcttgc       420
     gcaagctgtg ttccctgcgg ctttcggaag aaggcgatct ccccggacac ctgaacgaga       480
     tgacggattt gcagaaccgt ctggaagtga ttggggaagg tctgaaggat cgagttttca       540
     tggcgctgat tttgtcgagc ctcccgccat cgtttggcag cttgatcaat gtgatcgaga       600
     acaaaccgga acaagaacta acggtggatt ttgtgaagag caagctgcgg gaagagtggc       660
     gacgtcgtct cgagtgcaac ggtggtagtg tgcgcggtga cgagaaagtg atgcaaagtg       720
     ttaagtctaa caagacgaat aataagaaga aatttgtgtg tcactactgc aaggaagagg       780
     gacatttccg aaacgattgt ccgaagctgg ctaaaacgcg acaggagaag aagaaatcgg       840
     cagatagtaa ggcgaatctg gccgctgagg taccggatgg aatggagatg tgtctaatgg       900
     ctgtgacgac ctctggcgca aaccggtggt acttggactc cggtgctacg tctcacatga       960
     ccagcgacaa gaatctcctg aaggacgtga actcagcaaa gcagccggaa atctgcctcg      1020
     ccgatgggaa acgaatcaag tcgagcggcg ccggaagcgg aaagctggtg tcagtcaccg      1080
     gcgatggtgt gcggatggat gtcaccttga aggatgtgta tcatgttcct tcgttatcag      1140
     gaaatttgct ctcagtaagt aaaatttgtg acctggggta caaagtttta tttgatcgta      1200
     ctggatgtga agtaattaaa gatcaaaaag cagtgctggt tggtgaacgg agcggtggct      1260
     tgtaccgttt gaagaactac tctcagcaag cttttgtgac caaggctgag catccggatt      1320
     tgtgtgagca cttgtggcac cgaaggttcg gacatcggaa cagtgaagca atctcgagaa      1380
     tcgtacgtga agaacttggt ttcggactga aaatgaagaa atgtgacatt cagtgcgttt      1440
     gtggtatttg ctgtgaaggg aagatgagtc gcataccgtt tccgaaggaa tccggtagta      1500
     aatccaaagc agtgggggat ttagtgcatt ccgatctggg gggtccaatg gagaaagcga      1560
     ctcccagtgg tttcaggtac tacatgacga tggtggacga ttacagtggc tatacagtga      1620
     tttacttgct gaaagcaaag tcggacactg aactgaagat tcgggaatat tgtgccatgg      1680
     tgaagaacca gtttgggcgt gctccgaggg tgattcgtac cgacgggggc ggtgaatatt      1740
     ccagtgcatc gttgaaggcg tacctggcgg agaatggtat cattcatcag caaactgctc      1800
     cgtattcgcc acagcagaac gggaaggcgg aacgtaagaa tcggtatgaa gtggagatgg      1860
     tgaggtgctt gctggcggag tctggtcttg acaagaagta ctggggagaa gcgatttgca      1920
     ctgcaaacta cttgcagaat cggctaccaa cttctgctgt cgagaagacg ccgtacgagc      1980
     tgtggcatgg gaagaagccg tcgtactctc atttgaggac ctttggatcc gaggcatacg      2040
     ttcatgtgcc gaaagagaaa cgtttgaagc tggacaagaa ggcgaagaag atgatttttg      2100
     tcggatacgc agaaggaagg aaagcttacc gttttctgga tccggaaaag gattggattg      2160
     cgatcagccg agatgccaaa tttttggaga ctggtgtctt gaagtccgaa cgtgcggctg      2220
     aatcggaaca gtcctcgccg gttcaacaat cagactcgtt ggagataaaa gcatccgctg      2280
     aagaggcgga agataaggtg gtgttgtcac tcgggtcgga aactcccaat ccgggttcat      2340
     tgcctgaagc tgtggaaaac ccggagtctg aggaagaact ggaggaatcg gatcccagtc      2400
     cagaaattgc acgacgttca tcgcggccta acaaaggcat tgcaccgaga agattaatcg      2460
     aggagatttt tgctgtcggt gatgtgtcat tccaggatcc gacggagcca tccggcttca      2520
     aggatgcgat gaccggtgaa aagtgcgcag aatggaggcg tgccatggaa gctgaaatgg      2580
     aatctcatca ggtgaatggt acttgggatc tggtgaagct acctgatggc cggaaacccg      2640
     ttggatgtcg ttgggtgtat aagttgaaac ggaatgctgc tggtgatgtg gtgaaatata      2700
     aggcgcgact agtggctcaa ggtttcagcc agaaatttgg acaggactat gacgaggtct      2760
     ttgctcctgt aaccaagcaa acaacgctga ggaccctgct ggctgtcgca agcaagaaga      2820
     agctgatcct gaagcatttc gacgtgaaga cggcgtacct gtatggtgag cttgaagaag      2880
     agctgtacat gaagcaaccg ccggggttcg aaatcaaagg taaggaagca ttggtctgtc      2940
     gcttgaggag gagcatatac gggctgaagc agtcggcccg atgctggaac caccggctac      3000
     attccgtcct cctggagcta ggtttcgagc agagcacagc ggatccgtgc ttctatacga      3060
     aggtcgtcaa tggaaagcgt gtctacctgc taatttacgt ggacgacatt ctggttggca      3120
     gtggaagcga ggctgaaata aagaaaattt atgaagcgct gaagaaggag tttgagatga      3180
     cggatcttgg cgatctgaac ttcttcttgg gactggagat caccaggacg gaagggaact      3240
     acggcgtctc ccttgaaggc tacatcgatc gtgtggctga gcgatttgga cttcgtgacg      3300
     ctaaggaggc gaaaacgcca atggaggaag gattcacgaa gggcaagtcg gaaggtccac      3360
     ttctggagga tgcaacgaag tataggagct tagtcggagc cctactctac attgcggttt      3420
     gtgccaggcc ggatatagca gtgagcgctt cgattctggg caggagtgtc agtgcaccac      3480
     gggaagagga ctgggtggcg gccaagcgag tggtccgcta cttgaaggcg acgaaagact      3540
     ggcgtctgca gtacggagaa ccggctggaa aactaattgg ttattccgac gcagattggg      3600
     ctggtgatgc caaaacgagg aaatcgacaa ccggcaacat cttcttgttc gctggtgcgg      3660
     caatatcttg ggcgagtcgt ttgcagagct gcgtaacttt gtcgtcaatg gagtcggagt      3720
     acgttgctct aagtgaggca agtcaggagg cagtgtggct tcggaagctg ctcgaagatt      3780
     ttggcgaacc acaattggaa cctgtggaga tatcggaaga caaccaaagt tgtattaagt      3840
     tcgtcgaatc ggagagagtc agtcggcgat cgaagcacat agaaacccga gaggcctacg      3900
     tgaaggaact gtgcgaccaa agggtgctga agctggtgta ccgtcccacc gaagagatgg      3960
     tagctgacgc acttaccaaa ccgctgggca ggatcaagtt gcagaagttt tcttcaatgc      4020
     ttggtcttgt agctggcaat cgttgaggag gagtat                                4056
//
ID   Copia-123_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-123_AA_;
KW   Ty1_copia_Ele112; Copia-123_AA-I; Copia-123_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-268
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 268 BP; 74 A; 66 C; 52 G; 76 T; 0 other;
     tgaggccgac aacaattgct agatcatcgg ccaaactgaa cgaaccccca atcggccgaa        60
     ccccttcacg cgtgctgaca gatggaggta gcaaaacgga atggaaaata tttcggcgcg       120
     caatcgcacc gactgctgcg atcattcttt ttcatctttt ttattatcta gttacctctc       180
     gtcgagtaaa gacacgttgc gttattaaat aagtatttta tgttcaaatc taattccggc       240
     gttattattc cattgagaac tctgccca                                          268
//
ID   Copia-124_AA-I repbase;    DNA;    INV; 4144 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-124_AA_;
KW   Copia-124_AA-LTR; Ty1_copia_Ele102; Copia-124_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4144
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1495-2034] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..970
FT                 /product="Copia-124_AA-I_2p"
FT                 /translation="MDREGEVARVPQFDGSNYPQWKFRMSVLLQEHELQEC
FT                 IEVDLVEVDELKVKEEDSAAVRDAKSKAVEKRAKKDRRCKSLLISRVSDNM
FT                 LEYIQRQRVAERRVVCAGTSLSTQKYCKSPPLAKEAADTSTRWWLFARPLS
FT                 HVRADCPGVQIDRCEAGGHRYSVLFAANVGSGVCDRRYRPGNKPEDKLSLD
FT                 FVKCRLLDEEIKHSSGESDDRVIRVSMLPHSVVPARSSKRRRRVLSGSASD
FT                 AIAKGIKLPIVRRRETMRRRRNRRKQVRIWEKARRVFASSVVRVQVCGNRV
FT                 GSSTQDRRSI"
FT   CDS           1408..2934
FT                 /product="Copia-124_AA-I_1p"
FT                 /translation="MDNGMVDGISAKPKKSGDEFVCEPCLAGRQTRKPFAV
FT                 REDRQTKRVLELVHSDVCGPVTPVGIEGERYFVTFVDDWSRFTVVFLMNSK
FT                 DEVMDKFEEYEALVSAKFGKRISRLRCDNGGEYVGREFRKFCKKKGIKIEY
FT                 TVPYSPEQNGVSERMNRTLVEKVRSMLEDCGIGKEFWGPAIQTAAFLVNRS
FT                 PASAIGQRKTPYEVWEGNRPNVRGLRAFGAVVHVHIPKERRKKMDAKSWKG
FT                 IFVGYAPCGYRVWDPKQKKIVVARDVVFVENATKMSSEMDPKPERSADVFP
FT                 IRAIREDSDVDSDAEGEEVSDESSDDAGNSDEESDESDAYESGGDDQYDSC
FT                 ADRTIREAESEEQAEAESPGRRSGRSRKPPEWHQNYEMNYTGFALNATSFV
FT                 DNLPSSLAEMKKRPDWDKWQAAVHEEMDSLERNQTWTLVKLPEGRVPITCK
FT                 WLFKVKHNEGDGEERYKARLVARGFSQKQVLTMQKPILLLLGWIPFELCWQ
FT                 LRTSTGWQCIRWM"
XX
SQ   Sequence 4144 BP; 1061 A; 865 C; 1309 G; 906 T; 3 other;
     ttwggttatk gtcccagtga ccgcggctac cggaaaagcg taaaagttac cgaaaagtgc        60
     gaaaatggac cgtgaaggag aagtcgctcg agtgccacag ttcgacgggt cgaactatcc       120
     acagtggaag ttccggatgt cggttctcct gcaggagcac gagctccagg agtgtatcga       180
     agtggatctg gtggaagttg acgagttgaa ggtgaaagaa gaggactctg ctgccgtccg       240
     ggatgcgaaa tcgaaagcag tcgagaagcg ggcgaaaaag gatcgccgct gcaagtcgct       300
     gctgatctcg cgagtcagcg acaacatgtt ggagtacatc caacgacaaa gagtcgccga       360
     aagacgtgtg gtgtgcgctg gaacgagttt atcaacgcaa aagtattgca agtcgcctcc       420
     acttgcaaaa gaagctgctg acacttcgac acggtggtgg ttgtttgcaa gaccactttc       480
     tcacgttcga gcggattgtc cgggagtaca aatcgaccga tgcgaagctg gaggacatcg       540
     atacagtgtg ctatttgctg ctaacgttgg gtccggagtt tgcgaccgtc gttaccgccc       600
     tggaaacaag ccagaggaca agttgtcctt ggattttgtg aagtgcagat tgcttgatga       660
     ggaaatcaag cacagcagtg gtgaaagtga cgatcgcgtg attcgggtgt cgatgctgcc       720
     gcattcagtg gtgccggcgc gaagcagcaa aagaagaaga agagtgttaa gtggaagtgc       780
     ttcggatgcg atcgcgaagg gcataaaatt gccgattgtc cggagaagag aaacaatgag       840
     aagaagaagg aatcgaagaa aacaagtgcg catctgggaa aaagcgagaa gagtgtttgc       900
     ttcctcagtg gtgagagtgc aggtttgcgg aaatcgagtt ggatcatcga ctcaggatcg       960
     tcggagcatc tgacgaacga tcggaagcta ttcaagaagc tgtttccgat gaaggagcca      1020
     atgcacatct cggtggcaaa ggaaggtgag tccatcgttg ccaaagagta tggtgacgtg      1080
     gatgtgtttg ccgcagcgag gggtaagtcc attccaatta cgcttaagaa ggttcttttc      1140
     attccggaag cgcgagtgaa cttgttatcc gtccggaaga tggaaatggc tggactaaaa      1200
     gttgttttcg cgaatggcat cgtcastatc gagcgtgaat cgaaagtgat cgcagttggc      1260
     gagcgtcgcg gtaaactgta tgaactagac ttccatcggg aaaaaccgtc tgaatcagtg      1320
     ctctattcgt gcggtcgcgt gccaaaagaa cttgagttgt ggcatcgtcg ttacgggcac      1380
     ttaagcgcga aaaacttaaa agtgctgatg gataacggga tggtcgacgg gataagtgct      1440
     aaaccgaaga aatccggcga tgaattcgtt tgtgaaccat gtctcgccgg tagacaaacg      1500
     cgtaaaccgt tcgcagtgcg cgaggacaga cagacgaagc gtgttttgga acttgtccat      1560
     tcggacgttt gtggtcccgt gacgccggtt gggatcgaag gcgaaaggta ttttgttact      1620
     ttcgtcgacg actggagccg gtttacagtc gtgttcctaa tgaactcgaa ggacgaagtg      1680
     atggacaaat tcgaagagta cgaagcgtta gtgagtgcga agttcgggaa acgcatttcg      1740
     cggttgcgct gcgataacgg tggcgagtac gtcggtcgcg agtttcgaaa gttctgcaag      1800
     aagaagggga taaaaatcga gtacaccgtc ccctactctc cagagcagaa cggtgtaagc      1860
     gagcgaatga accgtacgct cgtggagaag gttcgttcca tgctcgaaga ctgcggtatt      1920
     gggaaggagt tctggggtcc tgcgatccag actgcggcat tcctggtgaa tcgcagccct      1980
     gctagtgcga tcggtcaacg gaaaacaccg tacgaagttt gggaaggtaa tcgacctaat      2040
     gttcgtggtc tgcgcgcgtt cggtgcggtg gtccacgttc acatccctaa ggaacgtagg      2100
     aagaagatgg atgcgaagtc ctggaagggg attttcgtgg ggtatgctcc ctgcggatac      2160
     cgagtgtggg atcccaaaca gaagaagatc gttgttgcgc gagacgttgt gtttgtggag      2220
     aatgcaacga agatgagttc ggaaatggat ccgaaacccg agcgtagtgc tgacgtgttt      2280
     ccgatccggg cgattcggga agattccgat gtggatagtg atgccgaagg tgaagaagtt      2340
     tccgatgaat caagtgacga tgcgggtaat tcggatgaag agtcggacga aagcgatgcg      2400
     tacgaaagcg gcggagatga ccagtacgac agttgtgccg acagaacgat ccgagaagca      2460
     gaatctgaag agcaagcgga agcagaatcg ccggggcgcc gatccggccg aagccggaag      2520
     ccgccggagt ggcatcagaa ctacgagatg aactacacgg gatttgcgct gaacgctaca      2580
     agcttcgtcg acaacttgcc aagctcgctg gcagaaatga agaagagacc ggattgggat      2640
     aagtggcaag cagcggttca cgaagagatg gattccctcg agcggaacca aacgtggaca      2700
     cttgtcaagt tacccgaggg gagagtgcct attacgtgca agtggctgtt taaagtgaag      2760
     cataacgaag gtgacggaga agagcggtat aaagccagac tcgtggctcg tggatttagt      2820
     cagaaacagg ttttgactat gcagaaacct attctcctgt tgctcggttg gataccgttc      2880
     gagttgtgtt ggcagttgcg aacgagcaca ggatggcagt gcatcagatg gatgtgaaga      2940
     ctgccttcct caacgggcat ttggaagagg acatctatat gacccaaccg gaaggcttcg      3000
     agcgtggcaa acatctggtg tgtcgactaa accggtcgct gtatggcctg aaacaggcat      3060
     caagggcctg gaatgcaaga ttccacagct tcgtcgaacg attgggattc cgccgaagtt      3120
     tgagcgaccc gtgtctctac gtgaagggtt ccggatgcaa ccaagttatc ctggtattgt      3180
     acgtggatga tttgcttgtg gttggtcgtc agctgaaggc ggttgaagtg gtgaagcgtt      3240
     gcctggccgg agagttcgag atgacggaca taggagaggt tcgacgtttt cggcatgagg      3300
     attgaccggg acaccgagca gaggtccctc cggatcagtc agaagggatt tttggagaat      3360
     ttgcttcgtc gtttcaacat gcaagagtgc aaggctgcat caacacctat cgagtgccgc      3420
     ctgcgcctga agaaaggaga agaagctgaa cgtactgaca aaccgtaccg agagttgatc      3480
     ggttgtctca cgtacgttac tttgacgtca aggccggact tgtgcgcggc agttagctac      3540
     ctgagccagt tccagagctg ccctacggaa gtgcactggg tgcatgcgaa gagagtactg      3600
     cggtacatta aagggacgct ggatttggga ctggtgttcg tggcaaagga gtcggcaccg      3660
     gtgatcgaag cattcgccga tgcggattgg gcgaacgacc ctgtggatag gcgttcgctt      3720
     acgggattcg tctttcgggt atgtggttcg actgttagtt ggcttaccag aaagcaatcg      3780
     accatctcac tgtcctcgac ggaagcggag ctggtggctc tgagtacggc tgtatgtcac      3840
     ggaatttggc tggagcgtct actcaaggat ttggcgatcg aaccggagcg tccggttgtc      3900
     tatcacgaag ataatcaatc gacgattagg gtggcggaag aagagcgtga taccggtcgc      3960
     ttgaagcacg ttgatgtaaa gcatcgattc gtccgtgaag agattcagcg ggggcgtata      4020
     gcagttcgtt acatccctac cggtaagcag atagccgata tcatgaccaa agggttgccg      4080
     gtaagtgtgt tccagaagca tcgagccagc ctggggttgg ctagttccgg acattgagcg      4140
     gggg                                                                   4144
//
ID   Copia-124_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-124_AA_;
KW   Ty1_copia_Ele102; Copia-124_AA-I; Copia-124_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-229
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 229 BP; 57 A; 61 C; 45 G; 65 T; 1 other;
     tgttaggata ggcaatatcc gaaccctgtt cgttcgacca aacgggccga acccactaag        60
     cgatgagctg tcattcaagc acaagcgcaa aagtgggctc gccttttctt agtacagttt       120
     ccattcaatc gttgttgcga gaaattcgcc tcaataaata ccgatttata gtttgcaawt       180
     tcgcgtgttc cgcgtttcat ttccggtatc actgcctccc taaatccca                   229
//
ID   Copia-125_AA-I repbase;    DNA;    INV; 5439 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-125_AA_;
KW   Copia-125_AA-LTR; Ty1_copia_Ele14; Copia-125_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5439
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2918-3202] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           348..1826
FT                 /product="Copia-125_AA-I_3p"
FT                 /translation="MTEKYLFARLNNQNYSIWKTRMEMLLRREERWYVVES
FT                 AKPEPVTDPWKKDDSKCHAIIVLYVEDSQLNLVKDCKSAKEVWDCLKQYHE
FT                 KTTMTSRVSLLKKICSLNLADGEDLEKHIFDMEELFVRLACAGQALEESLQ
FT                 IAMILRSLPDSYGGLVTALESRPEADLTMSLVKQKLLDEHQRRLERNTNSG
FT                 DRALKLQQREQKKRLCFHCQKPGHFRKDCRQWLHQQQKKSDGESVSEKATK
FT                 QNQKKKSDVKAKLSAEKDVPICFTVGNGRRKGCWYIDSGCSSHMTNDRSFF
FT                 FDLDESKQVQVVLADGSVSKSHGIGEGFVKCIDADGNVLEVKLTEVLYIPA
FT                 LDSGLISVRKLTKKGFRVNFVGSACSVVSAAGKTVALGELNGNLFVLKTVE
FT                 YANLSKELQHLPNCQHMWHRRFGHRDPAVLEKLKAGNLSVGFEMADCGLRQ
FT                 VCEDCLKGKLPRTSFPKSSDNRASRIRSVSKSSRKHSKRYISEHSSSF"
FT   CDS           join(3062..4300,4304..5287)
FT                 /product="Copia-125_AA-I_1p"
FT                 /translation="MATCMLLDAGLGKQYWGEAVMTAAYVQNRLPSRVVDK
FT                 TPFEKWFGKAPKLNHLRVFGCPAYVHTPDVKRTKFDCKSQKLIFVGYCEDR
FT                 KAFRFLDPKTNGITISRDARFIEQLSIPHMAKPEAQTSEEIEIELDWPESG
FT                 ASQEEAGAQGEQCVQEEQQAAEESDQDSDEEFYDGEMQDQADDRVADPADG
FT                 APGEQQNSGKRSTRGMLPSRLRDYVVDVALVVEDDPVSYEEAVQGPEQDLW
FT                 LAAMKEEYDNLMQNETWTLVELPAGRKPIGSKWVFKKKQDSAGNVTKYKAR
FT                 LVAQGFSQQFGVDYDSVFAPVAAHTTLKVLLTVAGHKQMKVRHLDVKGAYL
FT                 HGRLKEELYMQQPKGFQQRGQEKLVCRLQRSLYGLKQGARVWNETIRGILE
FT                 AMHFKQSSADPCLFTKRTPGWIYILIYVDDIIVACTSEEEIARVERSLKEN
FT                 LTLSSLGDVSCFLGIRIRKDVNGFYSMDQQGYILRIANRFNLDRARGSKIP
FT                 LDTGYYRSREGSKAMPDNKQYQCLIGALLYLAVNTRPDVAASVAILSRRVS
FT                 APTEADWVELKRVVRYLVTTNDYELKLTSKREEPLKLIGYSDADWSADTDD
FT                 RKSNTGFLFKLGQATIGWVSRKQTCVSLSTMEAEYIALSEACREVLWLRKL
FT                 LQDFNERQDGPTTVLEDNISCIDFVAIDRSSRRSKHIDTRVHFAKDLSEKG
FT                 IVTIEYCPSASMIADILTKPLGSQKQLQFSEMLGLTKSVGR"
XX
SQ   Sequence 5439 BP; 1581 A; 1060 C; 1394 G; 1403 T; 1 other;
     ggtcatgggc ccagtttcgg tggttgaaaa acgagtgtag tgaactttgc atgcgggaac        60
     gcttaagtgc attttgagcg aagccatttt gttttcattc gatttggctg attgaatgct       120
     gccagcagct gcagagctcg gacgactgtc agtgtgttag tgcgacagtg tttcgtccgg       180
     tgtgtgagcg gttgctcgaa taacggtttc ttctcaagag tcggtgtggc accgacgagt       240
     gtgtgcgtat ccattcgatt gattgtgtgt ttcgacgcga tcgacccagc agcggtcgga       300
     gatcagtgaa agtgtttctc aaatcgcggt tcggtgaata ggaaacgatg actgagaagt       360
     acttattcgc ccgattgaat aatcaaaatt attcaatatg gaagacgaga atggagatgc       420
     ttttgaggcg agaagagcgg tggtatgttg ttgaaagtgc gaaaccagag ccggtcacgg       480
     acccgtggaa gaaagatgat tcgaaatgtc atgcgataat agtgctctat gtggaagaca       540
     gccagctcaa tttggtgaag gattgcaaat ccgctaaaga agtgtgggac tgtttgaaac       600
     aataccatga aaaaacgacc atgacatcgc gcgtgtcctt gctcaaaaag atttgtagct       660
     tgaatttggc cgacggtgaa gatttggaaa agcacatttt tgatatggaa gagcttttcg       720
     ttcgtctcgc gtgtgcgggc caagcgctcg aagaatcgtt gcagatcgca atgatattgc       780
     ggagcctacc ggattcatac ggtggtctgg tcacggcttt ggaaagccgg ccggaggctg       840
     atctgacgat gtcgctcgtc aagcaaaagt tgttggacga gcatcagcgg cgattggagc       900
     ggaataccaa ttcaggagat agggctctga aactacaaca gagagagcag aagaagcgac       960
     tgtgttttca ttgccaaaag cccggccact tccgaaagga ttgccggcag tggctgcacc      1020
     agcagcagaa gaaaagtgac ggggaatcag tgagcgaaaa agcaacaaaa caaaatcaga      1080
     agaagaagag tgatgtgaag gccaagcttt cggctgaaaa ggacgttccg atttgtttta      1140
     cggttgggaa tggtcgtcgt aaaggttgtt ggtatatcga tagtggctgc tctagccata      1200
     tgaccaacga tcggtcattc ttcttcgact tggacgaaag taaacaagtg caagtagtgc      1260
     tcgctgatgg ctccgtgtcg aagtcgcacg gaatcgggga aggtttcgtg aagtgtatcg      1320
     acgcagatgg caatgtactg gaagtgaaat tgacggaagt gctttacata ccggcgctag      1380
     acagtgggct gatttccgta cggaagctga cgaagaaagg ttttcgggtg aactttgtcg      1440
     ggtcagcatg ttcggtagtg agcgccgccg gtaagactgt tgcgttgggc gaactgaacg      1500
     gaaacttgtt tgtgttgaaa acagtggaat atgcaaacct gagtaaagag ttacagcatc      1560
     tgccgaactg ccaacacatg tggcatcggc ggtttggaca ccgagatccg gccgtgttgg      1620
     agaagctgaa agcaggtaac ctcagtgtag gcttcgagat ggcggattgc ggtttacggc      1680
     aggtatgcga agactgcctg aaaggtaagc tcccacgcac ttctttccct aaatcttccg      1740
     ataacagagc cagtagaata aggagtgtat cgaaaagtag tcgcaaacat tcaaaacggt      1800
     atatctcaga gcatagttca tctttttaaa agcttttttc acgcaaatct tcatcatggc      1860
     atcaaatatt gaagcaacta aaaaaataat gaaaaatata cagtcttact ataaatacaa      1920
     caaagtttat aaagcatgga aaataaaatc ttgcacaaaa ttacattttt gaagtgtctt      1980
     ctgaagattc gatggtttgt attgaacaaa atgtatatca aacaaaatag gatgaaaagc      2040
     ttattctatc ggaaaatatg tttacttcac acaacacgca aaaagaagat caaaaaaata      2100
     aattattgct cttaaaaagc tcaattattg gaacaaggtc ggttttagaa agtcactttt      2160
     gttgaatcaa cttttgaaac tccgtcatat acagcggtaa ttatatagag taacattttt      2220
     tacttacatt actacataaa tatgcaaaga aacttttcca atcaaaaaac aatttttatt      2280
     cgttacaatc gttcgatatt accattaacg tgtagaaaga aaaaaaatca aaaaacgagg      2340
     tccttaaaaa tcgacttttt tcgatttttg tatttgctct caaatgcttg ttaatgaatt      2400
     tttcaaaata ttttttacac tatgtcataa gagttgtggc acagaatata ttagcataaa      2460
     caaaaaccat tttttcctaa aatttaacat atttattaac atatcaattt tttcagaggt      2520
     gtgcaagatt tttttcgaca tctgttagta gtttgcaaaa ttatcatgca aaatgccatt      2580
     ttattgaaac aatatcgccg catcataatt tttaaataca ttgtagagca tttctgatca      2640
     aaaaattgtt tgtaagttca acccattatt ttttagactg ttttgaatgt ttgcgactat      2700
     ttttcgatac actccttact cgacttggtg catactgacg tatgcggacc tatggctaac      2760
     gtgaccccag gcggctgtag atatttgatg acgctcatcg atgatttcag tcgctacacc      2820
     gttgtatgct tgctgcgaca aaaatccgat gtagccgatt gcattaaacg atatgtggct      2880
     cacgttaaga cgcgctttgg aagggcacca tgtgtgatta ggtccgaccg ggggaggaga      2940
     gtacgtcaac ggcgtgctta aagcgttcta cgagaaggaa ggtattcaag ctcagtacac      3000
     cgctgcttat agcccccagc agaacggtgt agctgagcgg aaaaaccgaa cgttgcagga      3060
     gatggcaact tgtatgttgc ttgatgcagg actgggaaag caatactggg gcgaagcggt      3120
     catgaccgcc gcttacgttc agaaccgtct cccttctcgt gtagttgata agaccccatt      3180
     cgaaaaatgg tttggtaagg ctccaaaatt gaaccaccta cgcgtgtttg gttgtccggc      3240
     atacgtgcat accccggacg tgaagagaac gaaatttgac tgcaaatcac aaaaactgat      3300
     tttcgtcgga tattgcgagg atcgcaaggc attcagattt ttggatccaa agaccaatgg      3360
     tatcacgatc agtcgtgatg cacgctttat tgagcagttg agcattcccc acatggctaa      3420
     gccagaagcg caaacatcgg aagagatcga aattgaactc gattggcctg aatctggagc      3480
     atctcaggag gaggcaggtg ctcagggaga acagtgcgtt caggaggagc aacaagctgc      3540
     cgaggagtcc gatcaagatt cggatgaaga attctacgat ggtgaaatgc aagaccaggc      3600
     agatgatcga gttgcagatc cagcggatgg tgcacctggt gaacagcaga acagtggtaa      3660
     gcggtcgacc agaggaatgc ttccgagcag actacgggac tatgtagttg acgtggccct      3720
     agtagttgaa gatgatccag tttcgtacga agaggctgtc caaggaccgg agcaagactt      3780
     atggctagca gcaatgaagg aggagtacga caacttgatg cagaatgaga cgtggacgtt      3840
     ggtcgaattg cctgccggcc gaaaaccgat aggcagtaag tgggttttca aaaagaagca      3900
     agatagtgct ggaaatgtaa ccaagtataa agcccgctta gttgcgcagg gcttctcgca      3960
     acagtttgga gtagactacg actccgtctt cgcaccagta gctgctcata ctacgttgaa      4020
     ggttttgctt actgttgccg gccataagca gatgaaggtt cgtcacctgg acgttaaagg      4080
     tgcatattta cacggtcgat tgaaagagga gctgtatatg cagcagccta agggtttcca      4140
     gcagcgtggt caagagaagc tagtgtgcag actacaacgc agcctttacg ggctgaagca      4200
     aggagctcgt gtatggaatg aaacgatccg tggtatcctt gaagcgatgc atttcaaaca      4260
     atcatcagca gacccttgtt tgttcacgaa gcgtactcct gwaggttgga tttatatttt      4320
     gatatacgtg gacgacatta tcgttgcttg tacttcggag gaggagatag caagagtcga      4380
     acgttctttg aaggagaatc tgaccctgtc atctttgggc gacgttagtt gtttcctggg      4440
     tatccgtata aggaaggacg ttaacggctt ctattcgatg gaccagcaag gctatatctt      4500
     gaggattgcg aaccgattta acctggaccg tgctagggga tcgaagatcc cattggatac      4560
     cggctactac cgcagcagag aaggcagtaa ggcgatgccc gataacaagc aataccagtg      4620
     cttaatcgga gcgttacttt acttggctgt gaatacgcgg ccagatgttg cagctagcgt      4680
     tgcaattctc agccgcagag ttagcgcccc aacagaagcc gactgggtgg agttgaaacg      4740
     ggtggtccga tatcttgtaa caaccaacga ttacgaactc aagctgacca gcaaaagaga      4800
     agaaccactg aagctaatcg ggtacagcga cgccgattgg agtgccgata cggatgatcg      4860
     caagtccaat accggattct tatttaaact tggacaagcg acaattggat gggtcagccg      4920
     caagcagact tgcgtatctc tgtcaactat ggaggcagag tatatagcct tatccgaggc      4980
     ttgtagagaa gtactgtggc tacggaagtt gcttcaagat ttcaacgaaa ggcaggatgg      5040
     accgacaact gtattggagg ataacatcag ctgtatcgac tttgtcgcca ttgaccgttc      5100
     ttctagacga tccaaacata ttgatacgcg tgtgcatttt gcaaaggatt tgtcggagaa      5160
     gggtattgtg actatcgaat attgtccgtc ggcatcgatg attgccgata tcctcaccaa      5220
     gccattggga agtcagaaac agctgcagtt ctcggagatg ttgggcttaa ccaagtccgt      5280
     aggccgctaa agatatcgag gaggagtgtg gaaagtgcga tatctttccc tcgcatctgt      5340
     gatgcggcga agagcaaaaa cagaaatgag cataccttta tgaattcgat gtactttgtt      5400
     tttatttcca ttccccaagt tactctcgtg aatataaga                             5439
//
ID   Copia-125_AA-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-125_AA_;
KW   Ty1_copia_Ele14; Copia-125_AA-I; Copia-125_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 129 BP; 23 A; 33 C; 33 G; 40 T; 0 other;
     tgcaaaacgt gtttgctcgt tccatcgtta aacgcggaat ccgaaaagtc cccggtcgat        60
     ctggttcttg tgccgtcgga gtgttgtcca ccttgtaacc ggtccgggat tgctgtttta       120
     cgttctaca                                                               129
//
ID   Copia-126_AA-I repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-126_AA_;
KW   Copia-126_AA-LTR; Ty1_copia_Ele160; Copia-126_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4284
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1390-1926] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..4266
FT                 /product="Copia-126_AA-I_1p"
FT                 /translation="MNGGGNGLASSGLPAIERLVGRENWHTWKFALRTFLE
FT                 VEELWEAVEPIPDEQGNIPAVNAAKDRKARGKIILGLDPTLYVHVQDTKTA
FT                 SEAWKKLEKVFEDSGLTRKWGLLHKLITTNLDSCGSMEAYVTRMVGTAHQL
FT                 NGVGLKIDEEWLGMLLLAGLPETYKPMVMALENSGAAITGDVVKTKLLQEV
FT                 QQSSTTVDPAFVSKGPGRSKHSGSENFSTKGPKCRCCGRFGHIARFCPSKD
FT                 STKKGVKKGDAFCTILSVAAMEEAADWYFDSGSCRHLTRNESLLSDVHKAD
FT                 GQIFAANKGVMKVVAEGSVALHPRCSESSIDVNGVQLIPELAANLLSVSKI
FT                 VDRGHTVIFRQKGREVINPEGKRIATGHRSNGLFKLDQQPQSALACQQMKS
FT                 IDSWHKRTGHLSIKGLKRLKNGLASGINFVESESGDCKTCAIGRQARLPFS
FT                 KEGRRANEILELVHSDICGPMEEVSLGGSRYYITFIDDKTRRMFVYFLRTK
FT                 SEEEVVEAFKAFYSMAERQTGKKLKVLRTDNGKEFKNRGFENLLRSLGICH
FT                 QTTVEYTPEQNGMAERANRTIVEKARCMLHEANLPKTFWAEATATAVYIIN
FT                 RSPSKGIRTTPEEAWSGQKPDLSNLRIFGTTTMSHIPKQKRRKWDPKAEEC
FT                 ILIGFDEESKAYRLYNKKTKKVFKSRDVTFINEGRSAVCQDSQNKVQDNEA
FT                 DRGANRRQPTMVRLDFEDCETQEVLEVNRTNPPEQDDDSSSEDNYDSADDS
FT                 VTIPSALPSRTVSNPPESHEASRRSGRERFIPGKYKQFHIKCKGLPASKFS
FT                 DGASGTSEDMTGEVNSDLADNPGYAQHSASPSYPNQRPVEDVQQGLMLSDR
FT                 GRFPQGKYCRYNSEDSCTAYDSPQCIADDPVTPEEALSRDDAELWKSAMQE
FT                 EYEAQMRNGTWTLTDLPAGRKAIRSKWVYKTKLDAEGRPARHKARLVIKGY
FT                 SQRKGVDYEETYSPVVRHSSLRYLFAIAARLNLDIDQMDAVTAFLQGELSE
FT                 EIYMEQPAYFQDTQNRTKVCRLNKALYGLKQSSRVWNHKLDSALKKFGLIS
FT                 TDYDPCVYYKIVGNKVLFVAIYVDDVLIFTNCRQWRKKLKDDLAKEFLMKD
FT                 IGPAKHVLGMRITRSQGKISIDQEAYVESILDRFGMSKSNPVATPLNPNDK
FT                 LTKEMQPIKDDEAERMKRVPYKEAVGCLMYLAQCTRPDICHAVNVLCRFNE
FT                 NPGEKHWNAVKHLLRYLRGTSKFRLTYKKEADPTITGYSDADWATSSEDRK
FT                 SITGFVFIAQGGAISWCCKRQQTVALSTCEAEYMALSAAVQEALWWKRLRA
FT                 TFDIDEAVKINCDNQSTIAVAKNGGYYPRTKHIDIRHCFIRDAVQRGDVDI
FT                 VYISTDKQLADCLTKSLPKPKIELQRAAMGIQSQ"
XX
SQ   Sequence 4284 BP; 1237 A; 975 C; 1163 G; 909 T; 0 other;
     ataggttatg ggcccagaag tggtaagagg ttgaaaattc gaagcttcca gaactcaaga        60
     ttttttcaac tgaagatgaa cggaggtggt aacggacttg cttcttccgg acttccagca       120
     atcgaacggc tggtaggccg cgaaaactgg catacctgga agtttgcgct gcggactttt       180
     ctagaagttg aagagttgtg ggaagctgtg gaacctattc cggatgagca aggaaacata       240
     ccagcagtca acgccgccaa ggacagaaaa gctcgaggaa aaatcattct tggcctggat       300
     ccaacgctgt acgtccatgt tcaagacaca aaaacggcca gtgaagcttg gaagaagctg       360
     gaaaaggtat tcgaagacag cggcctcacg cgaaaatggg gacttctgca caagctgatc       420
     acgaccaacc tggacagctg cgggtcgatg gaggcgtatg tgacgaggat ggttggtaca       480
     gcccaccaac tgaatggagt cggcctgaag atcgacgaag aatggctcgg aatgctgctt       540
     ctcgctggat taccggaaac ctacaagccc atggtcatgg cattagagaa ttctggagct       600
     gcgataactg gcgatgtagt gaaaacgaag ctattgcagg aggttcagca gtcatcgaca       660
     accgtcgatc cagcgttcgt gtccaagggg ccaggaagaa gcaagcatag cggatctgaa       720
     aatttctcga cgaagggtcc gaaatgccgt tgctgtggaa gattcgggca tatcgctcga       780
     ttttgccctt cgaaggattc aacgaagaaa ggtgtcaaaa agggtgacgc tttttgcaca       840
     attttgtcgg ttgctgcgat ggaagaagcc gcagactggt acttcgattc gggatcctgt       900
     cgccatctca caaggaatga gtcgttgcta agcgacgtac acaaggccga tggacaaatt       960
     ttcgctgcga acaagggtgt gatgaaggta gtcgcggaag gctccgtggc attgcatcca      1020
     aggtgttcgg aatcatcgat cgacgtcaac ggagtgcaac tgataccgga actggccgcc      1080
     aatttgctct cggtgagtaa aatcgtcgac agaggtcata cggttatttt caggcagaaa      1140
     ggtcgcgagg taatcaaccc agagggaaaa cggatcgcaa ccggacatcg atcaaatgga      1200
     ctttttaaac tggatcagca acctcagagt gcattagcgt gccagcaaat gaagtcgatt      1260
     gattcgtggc acaagcgaac gggacatctg tcgatcaaag gtctgaaacg attgaaaaat      1320
     ggattagcgt caggaatcaa ttttgtcgaa tcggaatctg gtgactgcaa gacttgcgct      1380
     attggtaggc aagccaggtt gccgttcagt aaggaaggaa gaagggccaa tgaaattctc      1440
     gagttggtcc actccgacat atgcggtccc atggaggagg tttctcttgg agggagccgc      1500
     tattacatca ctttcatcga cgacaaaacc cgcaggatgt ttgtgtactt tttacgtacg      1560
     aaatccgagg aagaagtagt tgaagcgttc aaggcgttct actccatggc tgaacgacag      1620
     acaggtaaaa agttgaaagt tttgaggaca gacaacggaa aggagttcaa gaaccgaggc      1680
     tttgagaatc tactacgaag tttgggaatt tgccatcaga caaccgtgga atatacaccc      1740
     gagcaaaacg ggatggcaga acgtgcaaac agaacgattg tcgagaaagc ccgttgcatg      1800
     ttgcatgaag caaacttacc gaagacgttt tgggcggaag ctactgccac cgccgtgtac      1860
     atcatcaacc gttcaccgtc gaaaggaatt cgcacgactc ccgaagaagc ctggtcgggg      1920
     cagaaaccag atctgtccaa cctgcggatt ttcggaacaa caacgatgtc gcacattcca      1980
     aaacagaagc gacgaaagtg ggacccgaag gcggaagaat gcattttgat cggttttgat      2040
     gaagaaagca aagcataccg gctctacaac aagaaaacga aaaaggtgtt caaatccagg      2100
     gacgtgacgt tcatcaacga aggaagatca gcagtatgtc aagactcaca gaacaaggtt      2160
     caagataatg aagccgaccg aggagcgaac cgacgacagc caacgatggt ccggctggat      2220
     tttgaggatt gcgaaaccca agaagtgctg gaagtgaacc gtacgaatcc acccgaacaa      2280
     gatgacgata gtagctccga agacaactac gatagtgctg atgactctgt gacgatcccc      2340
     tctgcgctcc catcgcgaac agtttcaaat ccgcccgagt cacacgaggc gtcgaggcga      2400
     agcggtaggg agcgcttcat ccctggcaag tataagcaat tccatattaa gtgcaaaggt      2460
     ctacctgctt cgaagttttc agatggtgca tccggtacga gcgaagacat gaccggtgag      2520
     gtcaacagcg atttggcaga caatcctgga tacgctcaac attctgcgtc cccatcgtac      2580
     cccaatcaaa gaccagttga agatgttcaa caagggttga tgctcagcga cagggggcgc      2640
     ttcccccaag gcaagtattg ccgttacaat tctgaagaca gttgtaccgc gtatgattct      2700
     ccacagtgca ttgccgatga tcccgttact ccggaagaag cattgtcccg agacgacgcc      2760
     gagctctgga agtccgcgat gcaggaggag tatgaggcac aaatgagaaa tggaacctgg      2820
     actctgacgg acctcccggc aggaaggaag gccattcgca gtaaatgggt ttataaaacc      2880
     aagctcgacg cagaaggaag accggctcgc cacaaggccc ggctggtaat caagggatac      2940
     tcgcagcgaa agggggtaga ctatgaagaa acctactctc ctgtggtacg tcatagttcc      3000
     ctgcgatatc tctttgcgat agctgcccgt ttgaatctcg atatcgatca aatggatgct      3060
     gtcactgctt tcctccaggg agaactgtcc gaagaaatct atatggaaca accagcctac      3120
     ttccaagaca cccagaacag gaccaaggtt tgccggctca ataaggctct ctatggatta      3180
     aaacaatcga gccgcgtgtg gaaccataag ttggactccg cattgaaaaa gtttggactg      3240
     atttcaaccg actacgaccc ctgcgtgtat tacaagatcg tcggcaacaa agttttgttc      3300
     gtggcaatct acgttgacga tgtactcatc ttcacgaact gtcgtcaatg gcgtaagaag      3360
     ctgaaggatg atctggccaa ggaattcctt atgaaagaca tcggtccggc gaaacacgta      3420
     ctgggaatgc gtatcacgag aagccaagga aagatttcta tcgatcaaga agcgtacgtt      3480
     gagagcatac tcgatcggtt cggaatgtcg aaaagcaatc cggtggctac tccactgaac      3540
     ccgaacgaca aactcacgaa ggaaatgcaa ccaatcaaag atgacgaggc cgagcgaatg      3600
     aagcgagttc cgtacaagga ggctgtagga tgtcttatgt acctagcgca gtgtacacgt      3660
     cccgacatct gccatgccgt caatgtcctg tgtcgattca atgagaatcc tggcgaaaaa      3720
     cactggaatg ccgtcaagca tcttctgagg tatttgcgag gtacttcgaa attccgtttg      3780
     acctacaaga aagaagcgga tccgacgatc accgggtact ccgatgctga ttgggctacg      3840
     agcagtgagg atcggaagtc cattactgga ttcgttttca tcgcgcaagg tggggcaatt      3900
     tcatggtgct gcaaacgtca gcagacagtg gcactttcga catgtgaagc cgagtatatg      3960
     gcactctcgg cagccgtcca agaagcgctt tggtggaagc gcctgagagc aacgttcgac      4020
     atcgatgaag ccgtgaagat caattgcgat aaccaaagca ctattgcagt tgctaaaaac      4080
     ggtgggtact atccaaggac caagcatatt gacatccgtc attgttttat tcgggatgct      4140
     gtgcagcgtg gtgatgtaga catcgtttat atcagtaccg ataaacaact ggcggactgc      4200
     ttgacgaagt cgcttccgaa accgaagatc gagcttcagc gagcggctat gggaatccag      4260
     agtcagtagg ttgaggagga gtat                                             4284
//
ID   Copia-126_AA-LTR repbase;    DNA;    INV; 117 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-126_AA_;
KW   Ty1_copia_Ele160; Copia-126_AA-I; Copia-126_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-117
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 117 BP; 40 A; 25 C; 19 G; 33 T; 0 other;
     tgaagtagaa aacgaagcaa cctatgactt gtaaactaga ataagatttt gtaaaataaa        60
     cttcacttta gttccgtcca cacgcgagac aagacgtgtt tctctattct ctgccca          117
//
ID   Copia-127_AA-I repbase;    DNA;    INV; 4047 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-127_AA_;
KW   Copia-127_AA-LTR; Ty1_copia_Ele190; Copia-127_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4047
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1416-1943] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..3548
FT                 /product="Copia-127_AA-I_1p"
FT                 /translation="MERSGIAKLTNENYETWKLEVEFLLVRESLWKYIVPG
FT                 VKPEEAENGANVAELAAWDEGDQKARATIGLLLTRSQHGHIRATRTAKDVW
FT                 ENLRKQHEKKSLTSKVHLLKRICDLKFQEGDDIEEHLAEFETLFEKLANAG
FT                 TKLDDDLQVILVFRSLPNTFDALTTTLENRSDDELTLALVKDKIINEVQKR
FT                 GEAVPADSAVLKVDGKGKSIVCHHCQKVGHKKRDCALWLKQNRGENSRSQQ
FT                 AVAIDTKKVARQHAKARKAASSEENFVFSAREGPVMNWIVDSGASSHMCAN
FT                 REFFVSVENPREGTPSFVTVADGKKAAVKGVGNCQIQCYGRAGEEKQIVLT
FT                 GVLYVPDLDMNLVSVGKLVQKGADVKFNESGCTIASGDRIAAVARRSNGLY
FT                 HLQMVERVGAVNERCVSKSCLHDWHRKLGHRDVKAIQELENRQLATGISIK
FT                 KCGLVLPCETCMQGKMARLPFPKKAEKKTSAVMDLVHSDLCGPMRTVTPGG
FT                 RRFFLTLIDDHSRYTTVYLLKRKSETFDAIQDYVQKMKTQFGKPPKVLRSD
FT                 QGGEYRGSNLVAFLKREGIKQQFTAAYSPQQNGIAERKNRSLVEMARCMLL
FT                 EAKMSNRYWGEAINTANYLQNMLPTKAVELTPYEIWHGAKPDVSKLQVFGT
FT                 TAYVFVPDAKRTKLESKAEKLTFVGYSLQHKAWRFINMKTNKLTISRDARF
FT                 LPPTDNNEEVPADEKGTLFFPLSFETEQQKQASLPGPAVAAGNEPVVSDSE
FT                 DDFHGFEDHSDDSQYEDAGIDDDDHAVPQDEDVSQPEVELARNEQAVSTPL
FT                 RSTRMNKGVPPQRYCADGRLAHYNCDEPRSYPEAVSGPEANLWKQAMQDEL
FT                 KSLHERNTWELTTLPPGKKAIGCRWIFKKKADESGKVIRYKARLVAQGFTQ
FT                 KYGVDYDEVFAPVVKQLTFRALFSVASQRNLLVKHADVKTAYPNGDLKETV
FT                 YMRLPPGCAADGENVVRHLRKGLYGLKQAARIWNHKLDDVLKQMGFKSSKN
FT                 DSCLYVRRSKGKLAYIAVYVDDFVIVCETEREYEDIIKKLNEFFTVTSLGD
FT                 IKFFLGIRVTRSEKHIALNQKRYIKKLLSRFGLEDAKPSSFPLDPGHLHPK
FT                 EEIPLPNNHQYASLIGGCCTWPCALARMLQQQFQFLAEKLVVPPRLTGWKL
FT                 NASCDTSKVLSTTN"
XX
SQ   Sequence 4047 BP; 1127 A; 937 C; 1138 G; 844 T; 1 other;
     agaggttttg ggccctgcaa aagtacaaga tggaaagatc tggaatcgcg aaactgacga        60
     acgaaaacta cgaaacctgg aagcttgaag ttgagttcct gctggtgcga gaaagccttt       120
     ggaagtacat cgttcccgga gtgaagccgg aagaggctga aaacggagcg aacgtggcgg       180
     agctggctgc ctgggatgaa ggtgaccaga aagcacgtgc gaccatcggg ctgctgctaa       240
     ccaggtctca acacggccat attcgggcaa cgcggaccgc caaggacgtg tgggagaacc       300
     ttcggaagca acacgagaag aagtcgttga cgtcsaaagt acatctcctg aagcggattt       360
     gcgatctcaa gttccaggaa ggtgacgata tcgaggagca cctggccgaa ttcgaaactc       420
     tgttcgagaa gttggccaac gctggtacga agctcgatga cgacctacag gtaatcctag       480
     ttttccgcag tttacccaat acgttcgatg cgctgaccac cactctcgag aaccggtcgg       540
     atgacgagct tacgctggcg ctcgtaaagg ataaaattat caacgaggtc caaaagcgag       600
     gagaagctgt tccggcggat tcggcggtgc tgaaagtgga cggaaaaggt aaatcgatcg       660
     tgtgccacca ctgtcagaag gttggccaca agaagcgaga ttgtgctttg tggctgaaac       720
     agaaccgtgg tgaaaattct cgaagtcaac aagcggttgc catcgacacc aagaaggttg       780
     ctaggcaaca tgcgaaagca aggaaggctg cgtcgagtga agaaaatttc gtgttcagcg       840
     cacgagaagg accagtgatg aattggattg tggattccgg tgccagctcg cacatgtgcg       900
     ccaatcgtga atttttcgtt tccgttgaga accctcgtga aggtacaccg agctttgtga       960
     cggtagctga tgggaagaag gcagcagtga aaggtgttgg caactgccaa attcaatgtt      1020
     acgggcgtgc cggtgaagaa aagcagattg tgctgaccgg agtgctgtac gtcccggacc      1080
     tggacatgaa ccttgtctcg gttggaaagc ttgtccagaa aggtgctgac gtgaagttca      1140
     acgaaagtgg atgtaccatt gccagtggtg atcgaatcgc tgctgtggca aggcgaagca      1200
     acggtctcta ccatctgcaa atggtggagc gcgtgggtgc tgtgaacgag cgatgtgttt      1260
     cgaaaagctg tttgcatgat tggcatcgca aactcggtca tcgggacgtg aaggccatcc      1320
     aggagctgga gaaccgacaa ctggccaccg gtataagcat caagaaatgc ggactggttt      1380
     tgccatgtga aacgtgtatg caaggtaaga tggcacggct accattcccg aagaaggcag      1440
     agaagaaaac cagtgctgtg atggatctgg ttcacagtga cctgtgtgga ccaatgcgca      1500
     ccgtgacacc gggtggtcgt cggtttttct tgaccctcat cgatgaccac agccggtata      1560
     caacggtgta cttgttgaag aggaaatccg aaacgtttga tgcaatccag gactacgtgc      1620
     agaagatgaa gacacagttt ggcaaaccgc cgaaagtgct gaggtccgat caaggaggag      1680
     aataccgtgg ctccaatttg gttgctttcc tgaagcgtga aggcatcaag caacaattca      1740
     cagcagcata ctcgccgcaa caaaacggga tcgccgagag aaagaaccgt tcgctggtgg      1800
     agatggctag gtgcatgcta ctggaggcga aaatgtccaa ccgctactgg ggcgaagcaa      1860
     tcaacacggc caattatctt caaaatatgc tgccaacgaa agcggttgag ttgacgccct      1920
     acgaaatttg gcatggcgcc aaaccggatg tttcgaagtt gcaagtcttc gggactacag      1980
     cgtacgtttt cgttcctgat gccaaacgaa cgaaactgga atccaaggct gagaagttaa      2040
     ccttcgtcgg ctattcgttg caacataaag cgtggcggtt catcaatatg aagacgaaca      2100
     agttgaccat tagccgggat gctcgcttcc tgccaccgac agataacaac gaagaggttc      2160
     ctgcagatga aaaaggtacg ttattctttc cattatcatt cgagactgag caacagaagc      2220
     aagcaagtct gccaggaccg gcagtcgcgg ctggtaacga gccagttgtt agcgatagcg      2280
     aagatgactt tcatggattc gaagatcatt ctgacgacag ccagtatgaa gacgcgggta      2340
     tagacgacga cgaccacgcc gtaccgcaag acgaagatgt gtcacaacca gaagtggaac      2400
     tggcacgcaa cgagcaagct gtgagtacac cattgcgatc aaccaggatg aacaaaggtg      2460
     tcccccctca acggtactgt gctgacggta gactggcaca ctataattgc gatgagcctc      2520
     gaagctaccc agaggcagtg tctggtccag aagcaaattt gtggaagcaa gccatgcaag      2580
     atgagctgaa gtcgctgcac gaacgcaaca cgtgggagct gaccacgtta ccacccggca      2640
     agaaagccat cggatgccgc tggattttca aaaagaaggc ggatgaaagc ggtaaggtca      2700
     tcaggtacaa ggcgcgtcta gtcgctcaag gctttacgca gaaatatgga gtggactacg      2760
     acgaagtttt tgcacctgtg gtgaagcagc taacgttccg ggctctgttc tccgttgcca      2820
     gtcaacgcaa tcttttagtc aagcatgctg atgtgaagac agcttacccg aacggagatc      2880
     tgaaagagac ggtatatatg cggctacctc ccggatgtgc agccgacggg gaaaacgttg      2940
     tgcgccatct gcggaaggga ttatacgggc taaagcaggc cgctcgcatt tggaaccaca      3000
     aattggacga cgtgctcaag caaatggggt tcaagtcatc gaagaacgac agttgtctct      3060
     acgtcaggag gagcaaaggt aagctggcct atattgctgt ctacgtcgat gatttcgtca      3120
     tagtgtgtga gaccgaacgg gaatacgagg acatcatcaa gaaattgaac gaatttttca      3180
     cggtgacatc gctcggggac atcaaattct tcctcggaat tcgagtgacc cgttcggaga      3240
     aacatatcgc gctgaaccag aaaaggtaca tcaagaagct cctgtccagg ttcggtctag      3300
     aagatgcaaa accgtcaagc tttccattgg atccaggcca cctacatcca aaggaggaga      3360
     tcccgctgcc caataaccac cagtatgcca gcttaattgg gggttgttgt acgtggccat      3420
     gtgcactcgc ccggatgttg cagcagcagt ttcaattctt ggcagaaaaa ctagttgtcc      3480
     ctcccaggct gactgggtgg aagctaaacg catcctgcga tacctcaaag gtactgtcga      3540
     ccacgaactg atcctgggtg cggattccaa gcaactggaa gtatttgtag atgccgactg      3600
     ggccggtgac accaaggatc gcaaatcgac cactggttat ttgatccggt acgcaggtgg      3660
     tatgattggg tggtgctcca ggaagcagga atgcgtgacc ttgagcagtt cagaagccga      3720
     gtacgttgca attacggaaa gctgcaagga gttatcctgg gttttacggc tattcgacga      3780
     tctggacatc aagactcagc tgccagtcat tatccacgaa gataaccaga gcgcaatcaa      3840
     gcaattggaa tccaattcca gtgaacgccg atcaaaacac gtggacacga gattccacta      3900
     cgctcgtcag ttgaagcaac agggaatcat cagtccacaa tatcttccaa caaacgaaat      3960
     gattgcagac atgatgacga agccacttcc tcgtgtcaag cagtcaagat tccgtgtcgc      4020
     agctatgatt cttccgtcga ggaggag                                          4047
//
ID   Copia-127_AA-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-127_AA_;
KW   Ty1_copia_Ele190; Copia-127_AA-I; Copia-127_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-157
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 157 BP; 49 A; 30 C; 27 G; 51 T; 0 other;
     tgttggcgat gagatctagt tggcgactat caatcatagc aaacatagat tagttgattt        60
     ttaaataaaa ttcattccaa gtttgtctct tgtcaagatc agaagtttta ttttcaacca       120
     agagtagaat acccggtcta cggccattca ccatcca                                157
//
ID   Copia-128_AA-I repbase;    DNA;    INV; 4073 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-128_AA_;
KW   Copia-128_AA-LTR; Ty1_copia_Ele170; Copia-128_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4073
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1473-1976] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..3365
FT                 /product="Copia-128_AA-I_2p"
FT                 /translation="MSSAKKAGIVQFAGEGYDTWKFRVETQLSAHGVKETI
FT                 TEDPPAEEPARTAFLEKDEKAKALLVAYIADSHLEYIRDKQTAREMWTSLA
FT                 NTYAKKGFAAQTYIRRSMALLRMEEGTPLADHFRRFDELGRQLKNAGATVT
FT                 ELDLVSQLFISLPPSYDVVTTAMENLDDQLKLETVKARLLAEEQKRSGRES
FT                 GSSAASGSDGVVLAARSGNRRPQSSKFAGKCYHCGEIGHKKFACPKVKNRS
FT                 DRAQVAKIPIDKAVALASGAKVSEKPDEIEWVLDSGASSHMVGDEGYFQEI
FT                 HELHVPLRIDSAKDGERLVATKEGTVKARLCVGENRYTLSFGHVLLVKQLK
FT                 YNPMSLSKLLNAGVHVEFEPDRAILTKDGETIGVAKSKGNLFYPRMNRLPS
FT                 GSALAAGSNTELQLWHKRYGHLSFKNALELKNSAMVDGLDGLHGDAKFCDA
FT                 CAESNMVRQPFCGTRPQTRRPLERVHTDVRGQITPSTSDGYRYFLSFVDDY
FT                 THFGVVYLLKRKDQVFDYFKVYEAMATAKFGTKIANLRCDLGREYFSKERL
FT                 AYYDAKGIQVESTVGYTPQQNGVAERFNRTIVEKMRAMLTESGAPKYLWGE
FT                 AVLNAVYVTNGSPTEAIKGKETPAERRHGEKPDVTKLRVFGCQAFSWVPKR
FT                 KRGKLDPTGRKCAMLGYAPTGYRLWDQEKRKMFVARDVRCNEAAFPFKAPS
FT                 ESDGRLVIPEDVSPVPEQEGEIEEQQMIKAVGEARNDARDSDDEDVGDQDP
FT                 DEDSATEVEDNDEEGATALPPQSERNETTGEVPRSSGRECRRPGWFSDFLT
FT                 YKALSAGANSLQVPECYNDVKGHPNEPDWREAIRDELVALQKNQTWTVVKR
FT                 PAKVQPVPCKWVFNLKTDADGRPARYKARLVAKGYAQKRHVDYEETFAPVA
FT                 RLTTIRTLLALATTNGMHIHQLDVKTAFLNGKLKEKVYMQCPEGVKMRPDE
FT                 VCLLHRALYGLKQSPRCWNSHFNEFLTTLGFVRSKHDYCLYVRACGDATVY
FT                 LVVYVDDLLIAAVDEADIERVKTTLMQKFEMTDMKELHHFLGIKIHRDLDR
FT                 GLMKLSQTSQIETIIARFGMQNCNPVKTPPNQDCS"
XX
SQ   Sequence 4073 BP; 1066 A; 951 C; 1226 G; 830 T; 0 other;
     cgtgtttctc tttaggttat cggcccagtc acgccatacc taagagccag tgaaaagtga        60
     aaagttctcg aagccgttcc agccccaaga tgtccagtgc gaagaaagca ggaatcgtgc       120
     agtttgccgg tgaaggctac gacacgtgga agttccgggt ggagacccaa ctttcggcgc       180
     atggagtgaa ggaaaccatc acggaggacc ccccggcgga ggaaccagcg aggaccgctt       240
     tcctggagaa ggacgaaaaa gcgaaagcgc ttctggtggc atacattgcg gacagccatc       300
     tggaatatat tcgtgacaag caaaccgcaa gggagatgtg gacgtcgttg gcaaatacct       360
     atgctaaaaa aggttttgca gcccagacgt acatccggcg gtcgatggcg ttgttgcgga       420
     tggaggaagg aacccccctg gcggaccatt tccgtcggtt cgatgagctg ggaagacagc       480
     tgaagaacgc cggtgccacg gttacggagc tcgacctggt gagccaactg tttatttcgt       540
     tgccacctag ttacgatgtg gttaccacgg cgatggaaaa tttggacgac caactgaagc       600
     ttgagaccgt caaagcacgc cttctagcgg aggagcaaaa gcgatctgga agagaatccg       660
     gttcgagtgc tgcgagcggg tctgatggag tggtgttggc ggccagatcc ggaaatcgac       720
     ggccacaatc atcgaaattc gccggtaagt gctaccactg tggagaaatc gggcataaga       780
     agtttgcctg cccgaaagtg aaaaatcgtt ccgatcgggc tcaagtagcg aagattccga       840
     tcgacaaggc ggtggcgctt gcgtccggag cgaaggtgtc ggaaaagccg gacgaaatcg       900
     agtgggtcct agattcggga gcgagttccc acatggtcgg cgacgaaggt tacttccagg       960
     agatccacga gctgcacgtg ccgcttcgta tcgacagtgc aaaggatggt gagaggctgg      1020
     tagcaacgaa ggaaggtacc gtgaaggcca ggttatgcgt cggtgaaaat cggtacacgt      1080
     tgtcgtttgg acacgtgttg ctcgtcaagc aactgaaata caacccgatg tcgttgtcaa      1140
     agttgctgaa cgcgggcgtg cacgtggaat tcgagccgga tcgtgccatt ttgacgaagg      1200
     acggcgaaac catcggtgtg gcgaaatcga agggcaacct tttttatccg cggatgaatc      1260
     gtttgccaag cggatcggca ttggcagccg gtagcaacac ggagctacag ctgtggcata      1320
     agcggtatgg gcaccttagc ttcaagaatg cgctcgagct gaaaaattcc gcgatggtgg      1380
     acgggctgga tggtctccat ggtgatgcaa aattttgcga cgcttgcgct gagagcaaca      1440
     tggtaagaca gccgttttgt ggtacgagac cgcaaactcg aaggcccctg gagcgcgtgc      1500
     acacggacgt gcgtgggcaa atcaccccgt caacttcgga tggataccgc tactttctgt      1560
     cgttcgtgga cgactatacg cacttcggag tcgtgtacct gctgaaaaga aaggaccaag      1620
     tgttcgatta tttcaaggta tacgaagcga tggcgacggc taaatttggg acgaaaattg      1680
     caaatttgcg gtgcgacctc gggcgtgagt atttttcaaa agagcggcta gcctactatg      1740
     atgcaaaagg cattcaagtg gagtcaacgg tcgggtacac cccgcagcaa aatggtgtgg      1800
     cggaacgttt caaccgcacc atagtggaga agatgcgagc gatgctgacc gagtcgggtg      1860
     cgccgaagta cctttgggga gaagcggtcc tgaatgctgt ctacgttacc aacggaagtc      1920
     cgactgaagc aatcaaaggt aaggaaacgc ctgcggaacg gcggcatgga gaaaagcctg      1980
     atgtcaccaa gctgcgagtt ttcgggtgcc aagcgttttc ctgggtaccg aaacggaaga      2040
     gaggtaagct ggatccaacc ggacgaaagt gtgcgatgct cggttacgca ccaactggat      2100
     atcgtctttg ggatcaagaa aagcggaaaa tgtttgtggc ccgcgatgtc cgctgcaacg      2160
     aagcagcatt cccattcaag gcaccgagtg agagcgacgg acgattagtg attccggagg      2220
     acgtatcacc ggttcccgag caagaggggg aaattgaaga gcagcagatg attaaagcag      2280
     ttggagaagc tcgaaatgat gctcgtgact ccgacgatga ggacgttggt gatcaagacc      2340
     ccgacgaaga ttctgctacg gaagtggaag acaacgacga ggaaggcgca accgcactcc      2400
     caccacaatc agaaaggaac gaaactactg gtgaagttcc gaggtctagt ggtcgggagt      2460
     gcaggagacc aggttggttt tctgattttc ttacgtacaa ggccctttct gctggtgcga      2520
     attccctaca ggttcccgaa tgttacaatg atgtcaaagg tcatccgaac gagcctgact      2580
     ggagggaagc aatccgagac gagttggtgg ctttgcagaa gaaccaaacg tggaccgtgg      2640
     tcaaacgccc tgccaaggta caacccgtac cgtgcaagtg ggtgttcaac ctgaagacgg      2700
     atgctgacgg gcgtcctgcg cgctacaagg cgaggctggt agctaagggc tacgcgcaaa      2760
     agaggcacgt ggactacgag gagactttcg caccggtggc ccggttgact accatccgga      2820
     cgctattggc actagcaacg acgaatggga tgcatattca ccagctagat gtcaagaccg      2880
     ctttcctgaa cgggaagctc aaggagaagg tgtacatgca gtgtccagag ggggtgaaga      2940
     tgcgccctga cgaagtgtgc ttgctgcatc gtgcacttta tggtctgaag cagtcgccca      3000
     ggtgctggaa cagccatttc aacgagttcc tgacgacctt gggtttcgtg cgatcgaagc      3060
     acgactattg cttgtacgtt cgagcctgcg gagatgccac tgtgtacctg gtggtatacg      3120
     ttgacgacct cctgatcgcc gctgtggatg aggccgacat cgaacgtgtg aagaccacac      3180
     tgatgcagaa attcgagatg acggacatga aggagctgca ccatttcctt ggaatcaaga      3240
     tccacaggga tttggatcgt ggcctgatga aactgtccca gacaagccag atcgagacga      3300
     taattgctcg ttttggaatg caaaactgca atcctgtgaa gacgccgccg aaccaagact      3360
     gcagttgaag cgagaagccg gaaaatgcga gtacccctac cgcgagctca tcggtagtct      3420
     catgtacgtc atgatgggtt ctcgaccaga cctgtgtttc gtcgttggat acttggcgag      3480
     gttccaggat gctgctggtg aagaacattg gaagcatgcc aaacgcgtcc tacgatacct      3540
     gcaagcaacg aagaagttag gattagttta cagaagcaag ccgaaggaac caacggtagc      3600
     tgcttacgtg gactccgact tcgcaagcga cgaatgcgac cggaaatgcg tttccggatt      3660
     tttactgaag gtgcacggaa acactgtcgc ctggtcatca aagaagcagt cgactgtggc      3720
     gatgtcgtct accgaagccg agtacgttgc catgagttcc tgcgtgagcg agacgatttg      3780
     gctaaccgga ttaatggccg atcttcgaca agatgcccta ctgtttccgg taccgctcta      3840
     tgaagacaac caaggagcga tcgcgatggc agaacgagag gaaacgagga gagtcaaaca      3900
     cattgacgtg aagtttcatt tcatccgaaa tgcagttgcc gaagggaagg tcaagctgat      3960
     ttacattccg acccagaagc aacaagcaga catcctcacg aagtctttgc ccgctccaac      4020
     gtttatagct ttaagaagta agttagggtt agaaggaaac aactgagagg ggg             4073
//
ID   Copia-128_AA-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-128_AA_;
KW   Ty1_copia_Ele170; Copia-128_AA-I; Copia-128_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-177
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 177 BP; 59 A; 37 C; 25 G; 56 T; 0 other;
     tgttgaaatc aaagcaactc agcaatattt gaattccgta ttatgtacag ttagtttccc        60
     tgttgctatg atcattatat ataacaactg catagcaacc atagtagtat aaatatcccc       120
     ctgtcgccag aaccagaaat cagtttctaa taaaccacca gtttgttagt gttacca          177
//
ID   Copia-129_AA-I repbase;    DNA;    INV; 4097 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-129_AA_;
KW   Copia-129_AA-LTR; Ty1_copia_Ele197; Copia-129_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4097
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1479-1988] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..4082
FT                 /product="Copia-129_AA-I_1p"
FT                 /translation="MVLPRDDPNSQGGGRSTGGGTAGTGQGDGATTSGGSV
FT                 RPAAPVRSFGNAVSLPAMEKLKGRQNYASWSFAMKMILIREGTWRAVKPAE
FT                 DQNVDPEMCERAFATICLALEKQNYSLVKTAKTAREAWEKLQQAFQDNGLI
FT                 RRFGLLDKLTSVKLEECETVEDYVDQLVTTSNDLSEIGFEVNDQWLASLLL
FT                 KGLPEYYNPMIMGLQASGINLTADVVKTKIIQDVKWPLKSSGVGGALYTKP
FT                 KSKHSKVDKKSGLCFTCNKPGHFASNCPQKSSKPKGKALCATLAVGTGSED
FT                 CWYFDSGATAHMTRSKDGFVKQVDWVHPIDTASSHSIKSVAKGTVQLELDE
FT                 GPIEVKEVLMVPELSANLLSISKICEKDMTVLFKAGGCEVRDENGDIVVTG
FT                 IQQDGMYKLITKKSPKAFLMTDMELWHRRLGHLNKQFMGKLTTLVDGLEIR
FT                 ITDMDDCVACAQGKHCRDSFHSSASRATDLLDLVHSDVCGPIEVPSIGGSR
FT                 YFVTFVDDASHKVFLYFIESKSQVKEVYEQFKAMVERQSGRKLKVLRTDNG
FT                 TEYVNSSLEKIMQRDGVVHQTTCPYSPEQNGTAERMNRTLVEKARSMLNDA
FT                 GLSKKFWAEAVSTAAYLVNRSFTRAVDGKTPEEAWSQKKPNLKHLRVFGSR
FT                 VMVHCPKQKRQKFDPKSVEGIFVGYGERSKGFRVFNPARNDVIVSRDVVFI
FT                 NEGRPITSTATEDRSQPVEFMELHSWLDMEENQANDAGESDDVVLPGPSTE
FT                 ESPVPAVALPPQSERSAVEQQGLRRSGRERQPTGKYTDFVCLSSTSGSDDL
FT                 TEPIEAFPGQAQPGSTDDPISYAEVLQRSDRNRWLEAMREELEALDKNETW
FT                 ELTELPKGKKAIRNKWIFKTKYGSDGNVDRFKARLVVKGCSQRYGIDYEEV
FT                 YAPVVRYSTIRYLMALAVEHDLEIEQMDAVTAFLQGKLKDEEIYMDQPEGF
FT                 VKDPSKVCKLKKALYGLKQSSRIWNLQLDEALREFGLQRSEIDPCLYFKKE
FT                 GGRMMFVTIYVDDFLLFTNDQALKKKLKAFLNSRFKMKDLGEAKLCLGLRI
FT                 TRDRKNGKLWLDQKQYLKDVLERFSMANCNSVSTPADPSAKLDKTMCPSDP
FT                 EEVREMQTVPYKEAVGSLMYAAYATRPDIAFAVNTVSKFSNNPGRRHWEAV
FT                 KRIIRYLKGTMDHRLQFSKQSNPDLTGYSDADWGGDAEERKSTTGYVFTKM
FT                 GGAISWNSKRQDVVALSTCEAEYIALSRTAQEALWWQQLLKQLDDQQVVPI
FT                 MCDNQSAICVAKNQGFNPKTKHIAIRYHFVRDTLNRGEVTLDYVPTKQQPA
FT                 DGLTKPLTKQNHEQFKKMLGIVS"
XX
SQ   Sequence 4097 BP; 1170 A; 874 C; 1169 G; 884 T; 0 other;
     actggttatg ggcccaggat tttggccata gcctgaagaa aagttaacaa gcgtgaagag        60
     ttctgaagtg tccgaaaatg gttcttccga gggatgatcc aaattctcaa ggcggcggta       120
     gaagtactgg cggaggaacg gcagggaccg gtcaaggtga tggagcaact accagtggag       180
     gcagtgtgcg gccagcagct ccggttcgat cgtttgggaa cgcagtaagt cttccggcca       240
     tggagaaatt aaaaggacgt cagaattacg cttcgtggtc cttcgcaatg aagatgatcc       300
     tgatacgtga aggtacgtgg cgcgcagtga agcctgctga agaccagaac gtggatccag       360
     agatgtgcga acgggcgttt gcgaccatat gtttagccct ggaaaagcag aactacagtt       420
     tggtcaagac agcgaagaca gcccgagaag cctgggagaa gctgcagcaa gctttccaag       480
     acaacggact gatccgaagg tttggacttc tcgacaagct aacatccgtc aagctagaag       540
     agtgtgaaac tgttgaagat tacgtggacc agctggtgac aacatcgaac gatttgagcg       600
     agattggatt tgaagtcaac gaccagtggc ttgcgtcctt gctgctcaaa ggacttcctg       660
     agtactataa tccgatgatc atgggactgc aggcatccgg gatcaacctc acagctgacg       720
     tagtcaagac gaagatcatt caagacgtga agtggccgtt gaaaagttcc ggtgtgggtg       780
     gcgctctgta cacgaaaccg aaatcgaagc attcaaaggt ggacaagaag agcggattgt       840
     gtttcacctg caacaagcct ggacatttcg cttcaaattg ccctcagaag tcatcaaaac       900
     ccaaaggtaa ggcgttgtgt gcaacattgg ccgttggaac tggtagcgaa gactgctggt       960
     attttgactc tggagcgacg gcacatatga cgagatcaaa agatggattt gtgaagcaag      1020
     tggattgggt acatccaatt gacaccgcta gcagccatag catcaagtct gttgcaaaag      1080
     gtacggtcca actggagttg gatgaaggcc cgattgaagt taaagaagtc ttgatggttc      1140
     cggagttgtc ggcgaatctt ctgtctatca gcaaaatctg tgagaaggat atgacggtat      1200
     tattcaaggc cggtggatgc gaggtacgcg acgagaacgg cgacatcgtt gtaaccggaa      1260
     ttcagcaaga tggcatgtac aagctgatta cgaagaaatc cccgaaagcg ttcttgatga      1320
     ccgatatgga actgtggcat cgtagacttg gacatctgaa taagcagttc atgggcaagc      1380
     taacaacgtt ggtcgatgga ttggagatac gaataacgga catggacgat tgcgtcgcgt      1440
     gtgcgcaagg taagcactgc cgagattctt ttcattctag tgcttcacgt gcgaccgatc      1500
     tactggactt ggtgcactcc gacgtgtgcg gtccgattga ggtgccatcg atcggcggaa      1560
     gtcgttattt cgttacgttc gttgacgacg cgagccacaa ggtgttcctg tatttcatcg      1620
     agtccaagag ccaagtgaag gaggtttacg agcagttcaa agcaatggtc gagcgacagt      1680
     ccggacgaaa actcaaagtt ttgcgcacgg acaacggaac cgagtatgtg aattcgtcat      1740
     tggagaagat catgcaacgg gatggcgtgg ttcaccaaac aacgtgtcca tattctccag      1800
     aacaaaatgg gacagccgag cgtatgaacc gtacgctggt cgagaaagcg agatcgatgc      1860
     tgaacgacgc aggactttcg aagaagttct gggcggaagc cgtatcaacc gcggcgtatc      1920
     tggtgaacag aagttttacc cgagccgtag atggaaagac accagaggaa gcttggagcc      1980
     aaaagaagcc gaacttgaag catctacgtg tgtttggttc ccgagtaatg gtgcactgtc      2040
     cgaagcagaa acgacaaaag tttgacccga aatccgttga aggcatcttt gtgggatacg      2100
     gtgaacgttc aaaaggattc cgagtattca atccagcaag aaatgatgtg atcgttagtc      2160
     gtgacgtggt gttcatcaac gaagggcgtc cgataacctc gacagcaact gaggaccgga      2220
     gccaaccggt agaattcatg gagctacatt cttggttgga catggaggag aatcaagcca      2280
     acgacgctgg tgaatccgat gatgtagtgc tacctggtcc cagcaccgaa gaatcgcccg      2340
     tgcctgccgt cgcgctccca ccgcaatcag aaagatcagc tgtagagcag caaggattga      2400
     ggcgcagcgg tcgggagcgc caacccacag gcaagtatac agattttgtt tgtcttagtt      2460
     cgacttctgg ttccgatgat cttacagaac caattgaggc gtttcccggt caagcacaac      2520
     ccggatcaac tgatgacccg atcagctacg cggaggttct acaacggtcg gatcgaaatc      2580
     gatggctgga agctatgcga gaggaactag aggcgctgga caagaacgag acgtgggagc      2640
     tgacagaatt accaaagggc aagaaggcga tacgaaacaa gtggatcttc aaaacaaagt      2700
     acgggtccga cggaaatgtg gatcgattca aggctcgatt ggtggtgaag ggctgttccc      2760
     aacgttatgg tatcgattac gaggaggtgt acgcgccagt ggttcgttac tcaacaataa      2820
     gatacctcat ggccctagca gtggaacacg atttggagat agaacaaatg gacgccgtaa      2880
     ccgctttcct tcaagggaag ttgaaagacg aggaaatcta catggatcaa cctgaaggct      2940
     tcgtcaagga tccatcgaag gtgtgcaagt tgaaaaaggc actatacggt ttgaagcaat      3000
     caagccgcat atggaatctt caactagacg aagcattgcg agaatttggt ttgcagcggt      3060
     cggaaattga tccctgtttg tacttcaaga aagaaggcgg acgaatgatg ttcgtgacga      3120
     tatatgtgga cgattttctc ctgttcacaa acgatcaagc tttgaagaag aaattgaagg      3180
     catttctgaa tagtcgcttc aagatgaagg atttgggaga agcgaagctg tgcctaggac      3240
     tccggataac acgcgaccgg aagaacggaa agctctggct ggatcagaag cagtacctga      3300
     aagatgtttt ggaacgattt agcatggcaa actgtaattc tgtatcaacc ccggccgatc      3360
     cttcagcaaa attggacaag acgatgtgcc catctgaccc agaagaagta cgagagatgc      3420
     agacggttcc ttacaaagaa gcggtaggtt ccctgatgta cgcggcgtac gctacaaggc      3480
     cggatatagc gtttgctgtg aatacggtga gcaagttcag caacaaccct ggacgtcgac      3540
     actgggaggc ggtgaaacgc ataatacggt acctgaaggg gacaatggac catcgtttgc      3600
     agttttcgaa gcagagcaat ccggatttga caggttactc ggatgcggat tggggaggag      3660
     atgcggaaga gcgaaaatca actactggtt acgtttttac caagatggga ggagccatat      3720
     cctggaactc caagcggcaa gacgttgtgg ctttgtctac gtgcgaggcc gaatatattg      3780
     cgctatcgag gacggcgcag gaagcactct ggtggcagca gctactcaag cagctggacg      3840
     atcaacaggt ggtgccgatc atgtgcgaca accagtcggc gatctgtgta gcgaaaaacc      3900
     aaggcttcaa cccgaagacg aaacatattg cgattcgtta ccattttgtc cgagacacgc      3960
     tcaatcgagg agaagttaca ttggattacg ttcccacgaa gcagcaaccg gcagatggac      4020
     taacaaaacc tttaactaag cagaatcacg aacagttcaa gaagatgctt ggtatcgtat      4080
     cgtaggttaa ggaggag                                                     4097
//
ID   Copia-129_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-129_AA_;
KW   Ty1_copia_Ele197; Copia-129_AA-I; Copia-129_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-154
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 154 BP; 50 A; 31 C; 25 G; 48 T; 0 other;
     tgttgcgagt agatcaattg tagtaaccta cgacacttca atactagcaa cggttagacc        60
     tagcaacgat tgtttagttg atgtaattag aaaataaatg ttcattacct cttcagacta       120
     cagccaatac agacgtgttt ttctacaact ctca                                   154
//
ID   Copia-12_AA-I repbase;    DNA;    INV; 3067 BP.
XX
AC   supercont1.351;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_AA_;
KW   Copia-12_AA-LTR; Copia-12_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3067
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.351; Positions  779920  782986.
XX
CC   Positions [1777-2304] - Integrase core
CC   'GATTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           439..2805
FT                 /product="Copia-12_AA-I_1p"
FT                 /translation="MSEKYIMPRLGNDNYQTWKLRMTMLLKREELWHTIGD
FT                 AKPEPVTAVWTNQDQKALATIVLFLEDGQLSLVKDAVCAKGAWDQLRDYHE
FT                 KATTTSRVSLLKKVCSLDMSDGGNMQEHLFELENLFDRLSCAGLPLEEPMK
FT                 IAMIFRSLPDSYGSLVTALEGRPDADQTIVLVKQKLLDEHQRRAERGGVSE
FT                 KVLKSRIEQKKERVCYHCRKPGHFKRNCRLWQQSQQSSDDEQKSSKKSDTK
FT                 AKQVTEAQSPICFTVSSKRQKNYWYVDSGCSSHMCNSRKFFRELNEDISVN
FT                 VVLADGSVAAAAGIGEGVISCLDGDGEVRKIVMKEVLYIPSLDSNLLSVRK
FT                 ITQRGLKVRFVKAKCEIISDDGKVVAVAKASENLFQLVVPESARLSEEVRH
FT                 NENCPHTWHRRFGHRDPRVFDRLQTEGFVTGFTMRDCGLKQVCEDCLKGKL
FT                 PRNSFPKFSQSRAKRVGDLVHTDVCGPVKDVTPGGYAYFMTLIDDFSRYTV
FT                 VCLLRNKSDVAGCIKKYVAHVKNRFGRAPCVIRSDGGGEYVNHELRMFYEK
FT                 EGIEAQLTAAYSPQQNGVAERRNRSLQEMSSCMLLDAGLPRKYWGEAIMTS
FT                 AYIQNRMPSRSVDTTPYQKWFGEKPSVEHMKVFGSVAYVHIPNVKRSKMDA
FT                 KSEKLVFVGYCSDRKAYRFVDPATDKLTISRDVRFLELPNVSIERSASEIK
FT                 NNSSSIELILDGGKGKIQEEPVIADDPVQEERTSEDEEGEEFYYDSTEDPI
FT                 EEEGAKRRTRGVLPKRLTDYVVGYTHLAIAAAKSTDKR"
XX
SQ   Sequence 3067 BP; 897 A; 569 C; 858 G; 743 T; 0 other;
     ggttatgtgg cccagttttg tgacggaaga ttcgtgaagc tagtgatttt tcattccgcc        60
     gccattgcat atttgctcgc ccggtgtgcg cttgcaagaa gtgattattg gcagtaaatt       120
     gctcgagaag tgatattccg aaactcgagc agtgaaaagc ggaaggctgt agtttgtgag       180
     aaaatcgata atttccggcc gatgagcaga tttgttgagg taaagtcccg gctcgtttct       240
     cgacattttc acccgaccag cagaacagaa aacgtccggt agtgttgtga ttgtagtggt       300
     gtcggaattc cagctgctga ttcgatccag taattagtag tgagagtgtg agtttcctcc       360
     cgtctcgaat cgacgcgatc gcggttagat tgcgaaagtg ttgctagttg cgtggtattg       420
     tttacgaata gcagaaaaat gtctgagaaa tatatcatgc cgcgtctcgg caacgacaat       480
     tatcagacgt ggaagctgcg gatgacgatg ctgctgaagc gtgaagagct ttggcatacc       540
     attggcgatg caaagcccga accggtcact gcggtgtgga cgaatcagga ccagaaagct       600
     ctggcgacaa tagtgctttt tctggaagac ggacagttaa gcttagtgaa agacgccgta       660
     tgtgcaaagg gtgcgtggga tcagcttcga gactatcatg agaaagccac cacaacgtcg       720
     cgagtgtcat tgcttaagaa agtgtgtagc ttagacatga gtgatggtgg taatatgcaa       780
     gaacacttat ttgaacttga gaatttgttt gacagactgt cgtgcgcggg tttaccgtta       840
     gaagagccga tgaaaatcgc aatgatcttt cgtagtcttc cggactccta cggaagtttg       900
     gtgacagctc tagaagggcg acccgacgct gaccagacaa ttgtgttggt taaacaaaag       960
     ctcctggatg aacaccaacg tcgtgccgaa cgtggtggtg taagtgagaa agtgctgaaa      1020
     tcgcgaatcg agcaaaagaa ggagcgggtt tgttaccact gtcgaaagcc aggacatttc      1080
     aaaagaaatt gtcggctttg gcagcagtcg cagcagtcaa gtgatgatga acagaagagc      1140
     tcgaagaaaa gtgacactaa agcgaagcaa gtaacggaag cccaatcgcc gatatgtttt      1200
     actgtgagca gcaagcggca gaagaattat tggtacgttg acagcggctg ctcgagccat      1260
     atgtgtaaca gccgaaagtt ctttcgcgag ctgaatgaag acatcagtgt gaatgtggtg      1320
     ctggccgatg gatcggttgc agctgccgct ggtattggtg aaggtgttat ttcgtgtttg      1380
     gatggagatg gcgaagtgcg taaaatcgtc atgaaagaag tactgtatat cccgagcttg      1440
     gacagtaatt tgctctcggt gaggaagatc acacaacgag gactaaaagt gcggtttgtg      1500
     aaggcaaaat gtgaaataat aagcgacgat gggaaggtgg ttgcagttgc aaaagccagt      1560
     gaaaatctgt tccagcttgt ggttccggag agtgctaggc tgagtgaaga agtgcggcac      1620
     aacgagaatt gccctcacac ctggcatcga cgtttcgggc acagggaccc gagagttttt      1680
     gatcggcttc aaacggaagg atttgtcact ggatttacga tgcgagactg cggattaaaa      1740
     caggtatgtg aggattgttt gaagggaaaa ttgcccagaa atagtttccc gaagttttcg      1800
     caaagtagag ccaagagagt tggcgattta gtccatacgg atgtttgcgg accagttaag      1860
     gatgtcacac ccgggggata tgcgtacttc atgacgctaa ttgatgattt ctcgaggtac      1920
     actgtggtgt gtttgttgag gaataagtca gatgttgccg gatgcataaa gaaatacgtg      1980
     gcacacgtca agaatcgatt tggccgagca ccgtgtgtca tacgttcaga cggtggtgga      2040
     gagtacgtga accatgagct aaggatgttt tacgaaaaag aaggaattga agcacagctc      2100
     actgccgcgt actcacccca acagaatggg gttgcagagc gaaggaaccg ctcattgcaa      2160
     gagatgtctt cgtgcatgtt acttgatgca gggcttccta gaaagtactg gggcgaggcg      2220
     atcatgactt cagcgtacat acagaaccga atgccctctc gttctgtgga cacgactcca      2280
     tatcagaagt ggttcggtga gaagccttcg gtggagcata tgaaggtctt cggcagcgtg      2340
     gcgtacgttc acatacctaa tgttaaacgt tcgaaaatgg atgcgaaatc agaaaagcta      2400
     gtatttgtcg gatactgcag tgatcgcaag gcatatcgat tcgtcgatcc agctaccgac      2460
     aagttaacaa ttagccgcga tgttcgcttt cttgaattgc cgaacgtttc cattgaacgc      2520
     tcagcatcag aaatcaaaaa caacagcagc tcaattgagt taattttgga tggcggtaaa      2580
     ggcaagattc aggaggagcc tgtgatcgcc gatgatccag ttcaggagga gcggacgtct      2640
     gaggatgaag aaggtgaaga attctactac gactctacag aagacccgat tgaagaagaa      2700
     ggtgcgaagc ggcgcaccag aggcgtactt ccaaagcggc ttacggacta cgtagtgggc      2760
     tacacccatt tggctatagc agctgccaaa tcaactgata aacgttaacc aacatcttgt      2820
     gtggagaaca ataatagttg tttgtagcag tgagaacatt gtcatcagga acattttaaa      2880
     ttaaatacag aaatgaagaa atatgaagta ataatcaaaa agtagcaggg aatgaaataa      2940
     aagattactt cgaacaatca tagctaaggt taggaagagc agaaaagtta agttaatcaa      3000
     tcgtaaaggt aaaggaaaag aagtgaagat gtggctattg aatatgttta aaaatattga      3060
     ggaggag                                                                3067
//
ID   Copia-12_AA-LTR repbase;    DNA;    INV; 294 BP.
XX
AC   supercont1.351;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_AA_;
KW   Copia-12_AA-I; Copia-12_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-294
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.351; Positions  779626  779919.
XX
SQ   Sequence 294 BP; 75 A; 57 C; 70 G; 92 T; 0 other;
     tgttgtgaag agcaatattt tctgtatacg cctatgtgta tgaataacag ctaccgaaag        60
     ataacgaaga agaacagtat gaagaacaat tgaattcgaa gacgtagtgt gcagtcagtt       120
     actatcgaac cgtttataat aaaggacgtt ttgtttcgta tgtgcgttgc ttcagttctt       180
     ccgatcacgt tgcgcgagtt cccaaatccc tcggttctgt tccggttctt tgtgtccgcc       240
     ggtctggata ttgtccgctg ggaagcttgg atggtcgatc agtttaatcc aaca             294
//
ID   Copia-12_CQ-I repbase;    DNA;    INV; 5115 BP.
XX
AC   AAWU01014235;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_CQ_;
KW   Copia-12_CQ-LTR; Copia-12_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 339-339 (2011).
XX
DR   GenBank; AAWU01014235; Positions   33573   28459.
XX
CC   Positions [1427-1963] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..3421
FT                 /product="Copia-12_CQ-I_1p"
FT                 /translation="MVLPNASGSGDGAQTNPPGSSSSLAGLPPIQRLIGRE
FT                 NWSTWKFAVQMYLEHEELWEIVQPTPNADGTLPAVNAKLDRKTRAKIAMLV
FT                 DPENFVHIQEAKTAREAWMKLEETFGDLGPERKIGLLCKLINTKLVNCSSM
FT                 ADYVNRIVTTSMQLRGIGFNVDEEWVGALLLAGLPPEYKPMVMAISNSGLP
FT                 INGDVIKTRLLQEVEEPPVTVALATKDKRYPSKQAAGQSKGPKCRSCHKFG
FT                 HIAKDCQNKNRLGGKGQSALSTVLSTIGAAEEDEWYFDSGATSHLTKDRGL
FT                 MENLQDGSGTVTAANNGAMKVVATGDAKLKASCCPGSPALDVRNVQLIPEL
FT                 TTNLLSVSQIVEKGNTVIFDKRGCQVVNPDGDVFATGTRVNNLFRFDAEKQ
FT                 SRAMACRESGQAELWHKRMGHLNVHGLKQLKNGLVTGIKFSDDGIGDCKVC
FT                 ALGKQTRLPFGKAGSRAEELLELVHSDICGPMEETSMGGKRYYITFIDDKS
FT                 RRIHFYLLKTKSAEEVLAVFREYHCLVERQTGRKLKTIRTDNGKEYINRMF
FT                 QDYLKTNGIRHQTTVDYTPEQNGMAERVNRSIVERSRCMLFEANLPKRFWA
FT                 EAASTAVYLLNRSPTKGHAKTPEEVWSGKKPDLSHLRIFGTSVMAHVPKQK
FT                 RRKWDAKAEECVLVGYEEDTKGYRIFNKTTRSVTVSRDVRFISEGETSHAE
FT                 VAATEQGAVYVKLDLLESLAQPGTDGTRTTPTGQQPELCQPGPSREPDIPS
FT                 EQEDQFEDTSDDETSGESSYETVEEDPADVTVTLSPALPPRTSSNPPVSQV
FT                 LRRSGRERALPGKLKDFDLGNKGVPRSNVSDNPGSGPAPADDRQSLIAAGR
FT                 PRKRLNKASSCTDDPCTVGEALGGGQSAQWTAAMQEEYDSLMKNGTWDLVD
FT                 PPPNLKIVGCKWIFKTKRDSEGAVVRHKARLVAQGFTQKYGYDYDEVFAPV
FT                 VRQTTFRTLLAVAAKRNMVVKQYDVKTAFLNGDLEEEIYMRQPPAFVTDGN
FT                 ERKVCRLKKSLYGLKQAARSWNNKLHTVLAKQGFIRCKADPACTRSEGEQV
FT                 LLRTGVRRRLIVASDASRPDREAFSGAPSTHIFKSTRVPRVEAKWSRARVT
FT                 RQVERF"
FT   CDS           3294..5114
FT                 /product="Copia-12_CQ-I_2p"
FT                 /translation="MRADLTVKLSPALPPRTSSNPPVSHVLRRSGRERALP
FT                 GKLKDFDLGNKGVPRSNVSDNPGSGPAPADDRQSLIAAGRPRKRLNKASSC
FT                 TDDPCTVGEALGGGQSAQWTAAMQEEYDSLMKNGTWDLVDPPPNLKIVGCK
FT                 WIFKTKRDSEGAVVRHKARLVAQGFTQKYGYDYDEVFAPVVRQTTFRTLLA
FT                 VAAKRNMVVKQYDVKTAFLNGDLEEEIYMRQPPAFVTDGNERKVCRLKKSL
FT                 YGLKQAARSWNNKLHTVLAKQGFIRCKADPCLYKKVKANKFCYVLVYVDDL
FT                 IVASDASGLHQELVAALEKNFEISQLGDIHYYLGIEVERDDRGDFFINQAK
FT                 YINQVVVSNGLSDAKVSKMPLDPGYLKQEAEGEPLPDNFEYHKVVGQLLYL
FT                 SVNTRPDISAAISILSRKTAAPTQTDWTELKRIIRYLKGTSHYRLQVSKTD
FT                 KQAGLIGYSDADWAESTADRKSNSGQIFLFNSGTISWSCRKQTCVALSTAE
FT                 AEFIALAEATQEALWLKRLLEDLDEDGAVTVNEDNQSCLKMLEKEKFSNRT
FT                 KHIATKYHFIRDVKEKDEVKYIYCPTEEMVADILTKPLPGVRMSKLAGACG
FT                 LAPAPRGGV"
XX
SQ   Sequence 5115 BP; 1337 A; 1291 C; 1579 G; 908 T; 0 other;
     agtggttatg ggcctagagt aggaagtttg gaagattcta gaagttgaaa aattttctca        60
     agaagttttg ctgatcaaga tggttctacc gaatgcttcc ggaagcggcg atggtgcgca       120
     aacgaatccc ccaggctcca gttcaagtct agccgggtta cccccgattc aacggctgat       180
     tggacgcgaa aactggtcga cctggaagtt cgcggtccag atgtacctgg aacacgaaga       240
     actgtgggaa atcgtgcagc caaccccgaa cgccgacgga acgttgccag cagtgaacgc       300
     caagctcgac cggaaaacgc gagcgaagat cgcgatgttg gtggatccgg agaatttcgt       360
     ccacatccag gaggcgaaaa cggcgcgcga ggcgtggatg aagctggaag agacgttcgg       420
     agatctcgga ccggagcgga agattggcct gctgtgcaag ctcatcaaca cgaagcttgt       480
     gaactgcagc tcgatggccg attacgtgaa ccggatcgtg acgacgtcga tgcagctgcg       540
     agggatcgga ttcaacgtcg acgaggagtg ggttggagct ctacttctcg ccggattgcc       600
     gccggagtac aagccgatgg tgatggcgat ctccaactcc ggattgccga tcaacgggga       660
     cgtgatcaag acgagactgt tgcaagaggt cgaggaaccg ccagtcacgg tagccctagc       720
     aacgaaggac aagcggtatc ccagcaaaca agcggcaggt cagtcgaaag gaccgaagtg       780
     tcggtcttgc cacaagttcg ggcacatcgc caaggactgc cagaacaaga accgactagg       840
     aggaaaagga cagagcgccc tcagcaccgt tctgtcaacg attggcgcag ctgaagaaga       900
     cgagtggtat ttcgactctg gagcgacctc gcatctgacg aaggacagag gtctgatgga       960
     gaatctgcaa gacggtagcg gaacggtgac ggcagccaac aatggtgcca tgaaggtggt      1020
     ggccacaggg gacgcgaagc tgaaagcaag ctgttgccct ggtagcccag cccttgatgt      1080
     ccgcaacgtg cagctgattc cggagttaac cacgaacctg ctttccgtaa gtcaaatagt      1140
     tgagaaggga aacacggtga tcttcgacaa gcgtggctgc caagtagtga acccggatgg      1200
     agatgtgttc gcaaccggaa ccagggtgaa caatctcttc cgattcgacg ctgagaagca      1260
     atcccgagcg atggcgtgtc gagaatctgg acaagcggag ctgtggcaca aacggatggg      1320
     tcatctgaac gtgcacggac tgaagcagct caagaatggt ttggtaaccg gcatcaagtt      1380
     cagcgacgac ggcatcggcg attgtaaggt atgtgccctc gggaagcaga cgagactacc      1440
     gttcgggaag gccgggtctc gagctgaaga gctgttggaa ttggtccatt ccgacatctg      1500
     cggacccatg gaggagacgt cgatgggagg caagcgatat tacatcacct tcattgatga      1560
     caagtcgcgg cgcatccact tctacctcct gaagaccaag tcagcagaag aagtcctggc      1620
     cgtgttccgg gaataccact gtctggtcga gaggcaaact ggacgaaagc tgaagacaat      1680
     ccggacggac aacggtaagg agtatattaa ccgaatgttc caggattatc tgaagacgaa      1740
     tgggattcgg caccaaacga cggttgacta tacgcccgag caaaacggga tggccgagcg      1800
     agtcaacaga tccatcgtcg agcgctccag gtgcatgctc tttgaagcga acctaccgaa      1860
     gcggttctgg gcagaggcag catccacagc ggtgtacctg ctgaaccgat caccgacgaa      1920
     gggacacgcg aagactccgg aggaagtctg gtctggcaag aagccggatt tgtctcacct      1980
     gcgcatcttt ggaacatcgg tcatggctca tgtaccgaaa cagaagcggc gaaagtggga      2040
     tgccaaggca gaggagtgcg ttctagtcgg ttacgaggag gacaccaaag gttaccggat      2100
     cttcaacaag acgacccggt cagtcacggt cagccgggac gtgaggttca tcagcgaagg      2160
     agaaacgagt cacgcggaag ttgcggccac cgagcaaggt gccgtgtacg tgaagctgga      2220
     tttgctggaa tcgctggcac aacctggtac ggacggtact aggacgacgc caaccggaca      2280
     gcagccggag ctgtgtcaac ccgggccaag tcgtgagccg gacattccgt cggagcaaga      2340
     ggatcagttc gaggacacat cggatgacga aacgtctgga gaatcgagct acgagacagt      2400
     cgaagaagat ccagcagacg tgaccgtgac gctttctccg gcgctccctc cacgcacatc      2460
     ttcaaatcca cccgtgtcac aggtgttgag gcgaagtggt cgggagcgcg cgttaccagg      2520
     caagttgaaa gattttgatt tgggcaacaa aggtgtaccc cgatccaatg tttcagacaa      2580
     ccccggctct ggaccggcgc cggcagacga tcgacaaagc ctgattgcag ctggacgtcc      2640
     aaggaagcgg ctgaacaaag cgagcagctg tactgacgat ccatgtaccg tgggcgaggc      2700
     gctcggcggt gggcaatctg cgcagtggac ggctgcgatg caggaggagt acgactcact      2760
     gatgaagaac ggcacgtggg acctggtgga cccacccccg aacctgaaga tcgtcggctg      2820
     caaatggatc ttcaaaacga agcgtgactc ggaaggtgca gtggttcgtc acaaggcccg      2880
     attggtcgca cagggcttca cgcagaagta cgggtacgac tacgacgaag tatttgcgcc      2940
     cgtggtgcga cagacgactt tccggactct cctggccgta gctgcgaagc ggaacatggt      3000
     ggtgaagcag tatgatgtca agaccgcgtt tctcaacggc gatcttgagg aggagatcta      3060
     catgcgccaa ccaccagcgt ttgttacgga cggcaacgag cggaaagtgt gcagactcaa      3120
     gaaaagtctt tacggcctca agcaagcagc caggtcgtgg aacaacaagc tgcacaccgt      3180
     actcgccaaa caaggattca tcagatgcaa ggcggaccct gcctgtacaa gaagtgaagg      3240
     cgaacaagtt ctgctacgta ctggtgtacg tcgacgattg atcgtggcca gcgatgcgag      3300
     cagacctgac cgtgaagctt tctccggcgc tccctccacg cacatcttca aatccacccg      3360
     tgtcccacgt gttgaggcga agtggtcgcg agcgcgcgtt accaggcaag ttgaaagatt      3420
     ttgatttggg caacaaaggt gtaccccgat ccaatgtttc agacaacccc ggctctggac      3480
     cggcgccggc agacgatcga caaagcctga ttgcagctgg acgtccaagg aagcggctga      3540
     acaaagcgag cagctgtact gacgatccat gtaccgtggg cgaggcgctc ggcggtgggc      3600
     aatctgcgca gtggacggct gcgatgcagg aggagtacga ctcactgatg aagaacggca      3660
     cgtgggacct ggtggaccca cccccgaacc tgaagatcgt cggctgcaaa tggatcttca      3720
     aaacgaagcg tgactcggaa ggtgcagtgg ttcgtcacaa ggcccgattg gtcgcacagg      3780
     gcttcacgca gaagtacggg tacgactacg acgaagtatt tgcgcccgtg gtgcgacaga      3840
     cgactttccg gactctcctg gccgtagctg cgaagcggaa catggtggtg aagcagtatg      3900
     atgtcaagac cgcgtttctc aacggcgatc ttgaggagga gatctacatg cgccaaccac      3960
     cagcgtttgt tacggacggc aacgagcgga aagtgtgcag actcaagaaa agtctttacg      4020
     gcctcaagca agcagccagg tcgtggaaca acaagctgca caccgtactc gccaaacaag      4080
     gattcatcag atgcaaggcg gacccctgcc tgtacaagaa ggtgaaggcg aacaagttct      4140
     gctacgtact ggtgtacgtc gacgatttga tcgtggccag cgatgcgagt ggactccatc      4200
     aagagctggt agctgcactg gagaagaatt tcgagataag tcaactgggc gacatccatt      4260
     actatctcgg aattgaggtc gagcgcgatg accgaggtga tttcttcatc aaccaagcga      4320
     agtacatcaa ccaggtcgtc gtgagcaacg gtctgagcga tgcgaaggtc tccaagatgc      4380
     ccctggaccc tgggtatctg aagcaagaag cggaaggaga gccattgccg gacaactttg      4440
     aataccataa ggtggtcgga cagctgctgt acctgtcggt gaacacgaga ccggacattt      4500
     ccgcagcgat ttcaatactg agcaggaaga cagctgcacc gactcaaacg gactggaccg      4560
     agctcaagcg gatcatccgg tacctgaagg ggaccagcca ctatcgtctg caggtgagca      4620
     agaccgacaa acaagctgga ctgatcggat actcggatgc agactgggcg gagagcaccg      4680
     cggacaggaa gtcgaacagc ggacagatat tcttgttcaa cagtgggacg atcagctgga      4740
     gctgtcgcaa gcagacgtgc gtcgcgctgt caacggcgga agcagagttc atcgcgttgg      4800
     ctgaagcgac acaagaagct ttgtggctga agcgattgct ggaggatctg gacgaggacg      4860
     gcgctgtgac ggtcaacgag gacaaccaga gctgcctcaa gatgttggag aaggagaagt      4920
     tcagcaaccg caccaagcac atcgcgacga agtaccactt catccgggac gtgaaggaga      4980
     aggacgaggt gaagtacatc tactgcccaa cagaggagat ggtagcagac atcttgacga      5040
     agccactacc aggagtcagg atgtccaagc tggcaggagc gtgcggatta gcaccagcac      5100
     ctcgaggagg agtgt                                                       5115
//
ID   Copia-12_CQ-LTR repbase;    DNA;    INV; 125 BP.
XX
AC   AAWU01014235;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_CQ_;
KW   Copia-12_CQ-I; Copia-12_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-125
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 340-340 (2011).
XX
DR   GenBank; AAWU01014235; Positions   28458   28334.
XX
SQ   Sequence 125 BP; 41 A; 29 C; 21 G; 34 T; 0 other;
     tggagataat cgagtaggcc ggtgctaacg aagaagaggc tttcaagtcc atcaataatt        60
     tatgtcatta cctgaataaa ctccaaaccc tacagacgtg tttctttcac actcttcaat       120
     aacca                                                                   125
//
ID   Copia-12_DTa-I repbase;    DNA;    INV; 2904 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   31-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2904
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, 5'-part is truncated. Supposed
CC   to be a recent copy.
XX
SQ   Sequence 2904 BP; 905 A; 558 C; 720 G; 721 T; 0 other;
     acaggattct gcgaactaaa gctggagaat gttctgcatg taccaggcat gaaaggaaac        60
     ttcatttcag tcacgagggc catcgaaaga ggatgtacag tgatgttcga tcaagaaaaa       120
     gcaactgtaa gtcaagatgg cgagaaaatt ttgacggcat tcaagaagaa taagcttttt       180
     atgtttgagt ctgaacggaa tctttgcttc ggagccagac aaaccgatgc cagtgttttg       240
     cataataggt atggccattt gaattacgcc agcctgatga atctctcgaa acaaggaatg       300
     gtatcaggat tggaaaatgt aaatttctca gaagcgaatt catgtttgac gtgcatgaaa       360
     tgtaagatcc actcacagcc attcccaacg ccttcggaaa acagagccaa gtgtctttta       420
     gaacttgtgc atacagatgt atgtgggcct ttccgaaaac gttctcttgg tggttctgca       480
     tatttattgt tgtttgttga tgacatgtcc aggcgaatgt ttacgtactt tctgaagtcc       540
     aaagatgaag ttttcagcaa attcgtggaa tttaaaaata tggcagagcg gcaaacctgt       600
     aaaaggatga ggtctctaag aagcgataat ggcggcgagt ttgtgaacaa gcgttttgat       660
     gaatacttga aggaacatgg aattttactt cagcttactg tgccatatat gccccaacaa       720
     aatggggtgg cagaacgtga cattcgtacc cttgtcgaga tggcaagaag catgctagta       780
     cacgctgatc taggagagtt tttgtgggca gaagctatcc aaactgcttg ctacataagg       840
     aacaggtcgc caacatccgc tttgattggg aaaacacctt ttgaagcatg gtacgggaag       900
     aaacccagtg ttttgggaat gcgaacattt ggctctatag cggtcgcctt agataaaaca       960
     cggcacagca agttccaagc aaaaggaagg gaatataaga tggtaggata ctcgctggtt      1020
     tcaaaagcgt acagcctgta tgatcagaag gcacgcgaag tcatcgaaaa acgtgatgtt      1080
     ttattcgaag agagtacgac tacaaatttt cctttggtta ctgacgaggc accccattct      1140
     tccggaacca cttccttgct aaaaacagat aaaattcagc cagatcactt cgaaaaggaa      1200
     gacattttaa gtgaagaatt ccaaagcgca gaagaggctg aatccgagcc ggaggtcatg      1260
     ccgactgagt tccagaacga cgatgagaat tgtgaggcag aagaacatca gatggaaggc      1320
     gtgcgaatcg gtcctggcag accaaagctg gtgcgaactg gacgtactga actttgtggc      1380
     tacacaagag tttttgcttc ctggcacata caaagaagcg acagttggca agcaggcttc      1440
     ttactggaaa gaatccatgg aaaaggaata cacttcactg gtaaaaaatg gtacttggat      1500
     cctgaccgat ttacccaagg gacagcaagc gattggctgt aagtgggtgt ataccattaa      1560
     gagggacagc agtggaaacg tgcagcgcta taaatctcgc ttagtagcca agggttgttc      1620
     acaaagatat ggaatcaact atgaggaaac gtattcgcct gtttgtcgat acgagacaat      1680
     tcgtttggtc ctggccttgg ctgcagagct gaatcttcac ttgcaccaaa tggacgtgtg      1740
     cacggcctac ctgaatagcg agctaaacga tattgtctat atgaaacagc ctgagggata      1800
     cattgacgag agatcaccac atcaagtctt aagattgaac aaggcaatat atggcttaaa      1860
     gcaagcagga agggagtggc atggaacgtt aaacaaagcc ctatgcgata taggatttac      1920
     cccttgtgag aatgagccat gtttgtacaa gatggatgta gatggccgac tctgcatgat      1980
     acttatctac tatgatgatt tgcttcttgc ttgtcagaaa aaaaaagaca taattgacat      2040
     caagacaaag atttctataa agttcgagtg cgtagataag ggtcaactga aaatgttcct      2100
     aggaatgcag aaaaagcgcg aaggcgaaat tggagctata caaatgaacc agcagctcta      2160
     cattaaggac atgcttgaga aacacaacat gcttaattgt cgacctgtgg caactccgtt      2220
     ggatcctggt tttcaaatag cttgttgcaa atcggattgc gtgctggaag atccagtaca      2280
     gtaccaatca gtcatcggag aattgatgtg gctgacatca aggcccgata tatatcttag      2340
     tgaaactggc tcaacggaac aaggaacccc ataacgagca tgttgcagca gtcaagcatc      2400
     tattgaggta tctaggagct acgatagatc acaacctgaa ctaccggcgc tgtggagagg      2460
     cactacgagg atatgcagat gcggattggg gcggagatgt cggatctcgt cgatcctaca      2520
     ctgggttcgt attcatgtta gcaggtggac ccatatcatg gaaatctgag agacaagact      2580
     gcgtcgcttt aagtagcaca gaatccgaat atatggcatt gacttccgca acaaaggagg      2640
     ctcttcactt aaggcgactg gtgatcgaaa ttggatgcgg tgaggcggat tctgcaattg      2700
     tactgtacgg agataatcta agtgcacaag ccttggcaaa gaaccctgtt tttcatgcac      2760
     gctcaaaaca catcgatatc cgtcatcatt tcatcaggga aatcgtacaa aaaggggaag      2820
     tcgagctgaa gttatcattt tgttaagctt atgaatttgt atgatccgaa ttaactatgt      2880
     aaacagatac acattgagga aggg                                             2904
//
ID   Copia-12_DTa-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.10, Created)
DT   31-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-12_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-192
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 100% identical to another copy.
XX
SQ   Sequence 192 BP; 56 A; 36 C; 27 G; 73 T; 0 other;
     tgttaaaata ccgaaatatc gcaatgtgac tctgtatatt aaaatctcat ctatagtttg        60
     acttatgtct ggtcagactg aatttcactt gtcaattttt ttctccagcg aatggacgct       120
     tacaaataaa actttagttt caacttgttt ctgcgtttgt ttgccacaat atttggaaca       180
     caatcttcat ca                                                           192
//
ID   Copia-12_LH-I repbase;    DNA;    INV; 4029 BP.
XX
AC   ADOQ01004297;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_LH_;
KW   Copia-12_LH-LTR; Copia-12_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4029
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004297; Positions   13726   17754.
XX
CC   Positions [1489-2019] - Integrase core
CC   'ATATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           991..3648
FT                 /product="Copia-12_LH-I_1p"
FT                 /translation="MARDKGFFENLELFTNDMPITIGNGSRMAAKGRGTIN
FT                 AELYNGTTWIKRQLLNVLWVPNLCEIGLISLGVLTDRGFKVEMKDKSLRVL
FT                 DNKKVILTGNRNYNNLYSLKIRMIEQTAHIGSIKLWHERLVHVSPGTVLKM
FT                 EKSNIVKGMEKMDTKEKFFCEGCTYGKMCKQPYKSKTTKCNEIGAVIHADV
FT                 CGKMEVESLNRSLYYVEFKDEASHYTKVYFMHTKDQVLKRLKQFVAEQRAE
FT                 TGRIMKTFFSDNGKEFDNDGVKEFLLNHGIKHQTSAAYNPQQNGRAERENR
FT                 TLVEHAKCMIHAKGLPKKLWAEAINTTVYVLNKVPVSGNEITPYEQWFKKK
FT                 PSVKHLRVFGTTCYVLIPQQFRKKWEPKSRKGKLVGYTDTDKNYRVWYEDK
FT                 DRIDVVRDVKFDETSELKGTVTISLDMNMQQEEEEETPDKHKLDDSEDSHE
FT                 EEPGEQGEIETPKTRKTISNATRSEEQGKRKLRDRSTLKMPDRYCEQCFLM
FT                 TSIPTNYNEALECEEAAEWKNAMNEEYNSLLQNNTWELTDLPENRKAIKSK
FT                 WVYTIKERPKTSLRYKARLVAKGYLQKPGLDYGEIFSPVMKMDSIRIILSL
FT                 AAFYKLDIAHFDVKTAFLYGDLKEELYLEQPEGFCDGTGKVCRLFKGLYGL
FT                 KQASRAWNNKLHGFLTEFGFQQVKSDHCVYFMKNREIIVILGIYVDDGLLC
FT                 CNSELIKDEILTYLKKLLEIQVEDANCFVGLEIDRDKSKNTLKIHQKTYIK
FT                 RILTRFNMLDCKTIDTPADANVRLSKPVEISNELMPFSYREVVGSLIYLMT
FT                 GSRPDIAFVVSKLSQFIECHDKTHWTAIKRILRYLKGSIDVGITYTANGDN
FT                 ILRGYCDSDYAGDIDSRRSTSGYIFMLNGGAIS"
XX
SQ   Sequence 4029 BP; 1498 A; 658 C; 873 G; 1000 T; 0 other;
     ggttatgggc ccagagaagc ttgaaactgg gacaatatag tttttatgat tgaagtattg        60
     aaaaagattg aatattcata agaaattagt tgctggacgt gtataaggac atcgtgcttt       120
     tagacaaaga aaatgtcgga caaagtgttg tataacctac cgactctcac agtagagtca       180
     tatcaacgat ggaaatttga tgttcaggca gctctagaat caaccgatct acttggatac       240
     gttgatggat cattgatatc accagtgctg agagccgata attctaatgc tgcagcagta       300
     acggaatgga aaaaacaaga tgcaagagca cgcttagtta tatcttcaag tctcgatgag       360
     gaacatcatg cagctattcg tggcagtgca tccgctgctg agatgtggaa tacaatcaag       420
     acgttgagag aacagagttc gcaaactaat aagtatcttg cacaacaaga atttcaccaa       480
     tacaagtaca cgccaggtat gagtatctca gcttattttt ctggtttgtc aatcatcagg       540
     caaaaattag aatcaataca ggaaacggta agtgatgcga cgatgattgc aaaagctata       600
     aacgatttgc caaaagaata caattttttt agacaatcgt accgcatctc ggcggcggct       660
     ggaacagctc tgacactaaa agacattcaa gcgcaattat agattgtgga acaagatata       720
     cagaaaggcg atgacaccgg taaggaaaca ggtgaagctc tgataacgaa aggttctgaa       780
     aaatacaaaa agcgtgacaa gaaatttgaa aataaagaaa acaaagaaaa acggaaatgc       840
     tggatttgtg gaaaacaggg acatttaaag caaaattgca aatttaataa gagcaatgat       900
     atatcgaaat ctgaacaaaa ggggctgatt ataaatgaag gtgatatcag tgacaaagac       960
     tggaaaggag actccggatg ttcaagtcat atggctagag acaaaggttt ctttgaaaat      1020
     ttggaactat ttacaaatga catgcctatt acgattggaa acggatcaag aatggcagcg      1080
     aaaggacgag gaacaattaa tgcggaactc tacaatggca caacgtggat taagcgacaa      1140
     cttttaaatg tactatgggt acctaatcta tgtgaaatag gtttgatcag tctaggagta      1200
     ctaacagatc gcggatttaa agttgagatg aaagataaaa gtctcagagt cctagataat      1260
     aaaaaggtaa ttctaactgg aaatcgaaat tataacaact tatacagttt aaaaatacgc      1320
     atgatagaac aaactgcaca cattggaagt ataaagttat ggcatgagag acttgttcat      1380
     gtttcgcctg gcactgtatt gaaaatggaa aaatcaaaca ttgtgaaagg aatggagaaa      1440
     atggacacca aagaaaaatt tttctgcgaa ggatgtacat acggaaaaat gtgcaaacaa      1500
     ccgtataagt caaaaaccac aaaatgtaat gaaattggtg cggtaataca tgcagatgta      1560
     tgcggaaaaa tggaggttga atctttaaac agatctctat actacgtaga atttaaagat      1620
     gaggcaagtc actataccaa agtttacttc atgcatacca aggatcaagt tctaaaaaga      1680
     ttgaagcaat ttgttgcaga acaacgtgca gaaacaggta gaattatgaa aacattcttt      1740
     agcgacaatg gaaaagaatt cgacaatgat ggtgtaaagg aatttttgct aaatcatgga      1800
     atcaagcatc agacgagtgc tgcttataat cctcagcaaa atgggcgtgc tgaacgtgaa      1860
     aatcgtaccc tggttgaaca tgcgaagtgt atgattcatg ctaaaggatt accgaagaaa      1920
     ctctgggcag aggcgataaa tacgacagtc tatgtactca acaaggttcc agtctccgga      1980
     aatgaaataa cgccctatga acaatggttc aagaagaaac cgtcggtcaa gcatttgaga      2040
     gtttttggga ctacctgcta tgttttaata ccacaacagt tcagaaagaa atgggaacct      2100
     aagtcaagaa agggaaaact tgttggctac acagatacag ataagaacta tagagtatgg      2160
     tatgaagaca aggatagaat cgatgtcgta agagacgtaa agtttgacga aacatccgaa      2220
     ttaaaaggca cagttaccat ctcattagac atgaacatgc aacaagagga agaagaggag      2280
     accccagata aacataaact tgatgattcc gaagattcac atgaagagga accaggtgaa      2340
     caaggagaaa ttgagacacc aaaaacgagg aagacaatct cgaatgctac tagaagtgaa      2400
     gaacaaggaa aaagaaaact acgagatcga tctactctaa agatgccaga tcgatactgt      2460
     gaacaatgct tcttaatgac aagtatacca actaactata atgaggcact tgagtgtgaa      2520
     gaagcagcag aatggaaaaa tgcaatgaat gaagagtata acagtctact tcaaaacaat      2580
     acctgggaac taacggatct accagagaat agaaaagcaa taaagtcaaa atgggtctat      2640
     acaataaagg aaagaccgaa aacgagtctg agatacaagg caaggttagt ggcgaagggt      2700
     tatttacaga aacctggtct agactatgga gaaatttttt caccagttat gaagatggac      2760
     tccatacgta taatcctgtc acttgcagca ttttataagc ttgacattgc ccattttgat      2820
     gttaaaactg ctttcttata tggagaccta aaagaggaac tttatctgga acagcctgag      2880
     ggtttctgtg atggaactgg aaaagtctgc agattattca aaggactcta tggattaaaa      2940
     caagcatcaa gggcatggaa caacaaatta catggtttct tgacagaatt tggttttcaa      3000
     caggtaaagt cagatcattg cgtatacttc atgaagaatc gtgaaatcat tgtcatcctt      3060
     ggtatctatg ttgatgatgg tttactgtgc tgtaactcag agttgataaa ggatgaaata      3120
     cttacctatt taaagaaact cctcgagatt caggtggaag atgcaaattg tttcgtcgga      3180
     ctggagatag atagagacaa aagcaaaaat actctaaaaa tacaccagaa gacatatata      3240
     aagaggattc taacccgctt caacatgttg gattgcaaga ccatagacac tcctgcagat      3300
     gccaatgtca gactaagcaa accagtggaa atttcaaatg aattgatgcc gttttcatat      3360
     agagaagtcg tcggcagttt aatatattta atgacaggca gcagaccaga cattgccttt      3420
     gtagtaagta aattgagtca attcattgaa tgccatgata aaactcactg gacagcaatc      3480
     aagagaatct tgcgatatct gaaaggctca atagatgtcg gaatcactta tactgcaaat      3540
     ggagacaata ttctgcgagg atactgcgac tctgactatg caggtgacat cgattctaga      3600
     agatcaactt ctggttacat tttcatgctg aacggaggag ctatctcata gagttcaaag      3660
     ttgcaaaaga cagtggcttt gtctacaacc gaagctgaat atattgctct tgctgagtct      3720
     accaagcaat cgctatggct tggacaacta ttgactgatt taggtttggt ttcagatccg      3780
     atttcaatac attgtgacaa ccagggagct ctgaaattgg ttaagaatcc tgaacatcac      3840
     caaaggacaa aacacataga tgtgagatat tactttgtaa gggaggcaga acgagaagga      3900
     cggattgcag tcaaatatct gaagacagaa gatcaactcg cagatatact tacgaagcca      3960
     cttcatagac cacgttttaa atactgttta aacttaattc atttatatga taattagagc      4020
     aagagggca                                                              4029
//
ID   Copia-12_LH-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   ADOQ01004297;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_LH_;
KW   Copia-12_LH-I; Copia-12_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-209
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004297; Positions   13517   13725.
XX
SQ   Sequence 209 BP; 62 A; 31 C; 29 G; 87 T; 0 other;
     tgttaataaa aaggtgctct acattatccg cgtatataaa gcgcacacta gattcaacta        60
     agtttatttg ttttctacat gatttttctt atctacatta tttttggtgt tctatgtttc       120
     ttcttctgat tttatgtaat gtgtgcgctg ctgaataaag tttctttaaa aataaagact       180
     aattattacg tttaaccgag taatcaaca                                         209
//
ID   Copia-12_LMi-I repbase;    DNA;    INV; 4047 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4047
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3095-3095 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(377..982,838..2073,2119..2847,2851..3126,
FT                 3123..3389,3418..3984)
FT                 /product="Copia-12_LMi-I_1p"
FT                 /translation="MYDTLTKIYQKNTDQQKTQLLGEFYNFEYDRNQDVMS
FT                 NIAKVQTLAFRLNRLGQNIDETALITRIMTKLPDEYKHFGSAWDSTCSEEK
FT                 TLENLKSRLQSEEDKIKKNEEIRVAFKAAVYKKKNQNKKGKKTVKCFGCGG
FT                 SGHFVSECKKKLTDNXNRIQCSTCGKHHLGECWAKQELPPCKYCEKKKIIX
FT                 QKNASLKKTMRRQXQNTVFYMWKTSFGRVLGETGTASMQILRKKKNHPXEK
FT                 CFFKEDHEKMKKAPKTVFLSEALVTENQEKEINKVDTEFVVDSGSNEHMSH
FT                 EMKIMSNVKSCEGTKIKIADGNFIYXNLVGTVESQQVMLTNVIHAPELSRN
FT                 LLSVNAITEKGGVAIFDKEKVKIVKDGNVILEGNKTENGLYIINIKVDSIK
FT                 EVLLTQKKKIIQWHKKLGHLNYSYLKKIPELCDGVDKIVLEEEMPFCETCV
FT                 MAKQVRKPFNTVRYRATRPLEIIHTDVCGKISPSTYHNEEYFLTCLDDYTH
FT                 FLKVYLLHTKDETENYIKEYVSESEAHFNLKTEKIRCDRGGEYRSADFKEW
FT                 CKKMGIVIDYTIKESPQLNGKAERINLTIMNKVRAMLFDSRIGNKKWGYAA
FT                 LAVAYLMNRSPTTLXMTGYFWICVFTKRLGHLKKKLSVRGERGVLVGYTDN
FT                 GYVIWNRKTGKFTEARDVEFTHQYEDREEESKEEGINLTEEEERPEDFDDE
FT                 EERRDDPDEEXRGDPEEDTETYQRPRRQIHLPKRYDDYVMLTYKECTENED
FT                 KENWMKAINEEKESLKKNETWTLVDKEMAHGKEIVTGKWIFKKKDNGKYKA
FT                 RLVARGCQQDQGKLDFKDIFSSVVQTNSLRYLFALAAHDDLTIMTFDVKTA
FT                 FLNWTERRNFHGSSRRIQXTWENLPVKKGTYGLKQAPLQWNKKLNEFLKHE
FT                 NLIQLKSDQCVYKANTGKKLYLAVHVDDGILFGEDICQMKNLLKNKLKKNF
FT                 DITVDEDPTVYLGIEIERTKEGIYIHQEKYATEVVKRYQMENSKSVTTPIS
FT                 SQANGTKSDFPYREAIGSLLYLACKTRLDLMQSKSFRHSKSEENIEVPEFN
FT                 NREWNILSIKKTKQEIVAYCDADFAGDRKDRKSTTGYVFMYNNAPISWCCK
FT                 KQCVVALSTTEAEYISAAQCCQEMKVFKTFLEQLLSENIKMTLCVDNQSAI
FT                 AMIKSGQMSRRSKHIDVKYHFISDELNHGWFKIQYCETQEQLADILTKPLQ
FT                 SITFKRLKKKLMFDRYI"
XX
SQ   Sequence 4047 BP; 1596 A; 575 C; 854 G; 1013 T; 9 other;
     ggttatgggc ccaggacgtg ctacaaatct ggagaaaaaa tacggtgaaa atttacgagt        60
     gttaatagac tgtgtctttc tgtgaaaaga cttggcgttg tgtttgaaaa aaaaatggct       120
     tcatcagtag atgatacaac attaaacaac attccaaaat taaaagacgc tacaagtttt       180
     ccgctatggg aattagaaat aaatgtgatg ttcatggcaa aaggcctcag tggtacgtca       240
     gtggcgcatc gtgaaacccg aaaaagaaaa aatatccgca tgggaacaaa aagacgcact       300
     tgcaaaatat ttcattttga gaactataga tgtgaacgta aaaacacatg tccttacctg       360
     tgaaacgtct aaacagatgt atgatacact tacaaagata tatcagaaaa atacagacca       420
     acagaagacg caattacttg gcgagttcta caatttcgaa tatgacagaa atcaagatgt       480
     aatgtccaat attgctaaag tgcaaaccct agctttcaga ttgaaccgcc tagggcaaaa       540
     tattgatgaa acagcgttga ttacaagaat aatgacgaaa ttgccggatg aatataaaca       600
     ttttggaagt gcttgggact ctacttgcag tgaggaaaaa acactggaaa acctgaaatc       660
     aagacttcaa tctgaagagg ataaaataaa gaaaaatgaa gaaatacgtg ttgcttttaa       720
     ggctgcagtt tacaagaaga aaaaccagaa taaaaaaggt aagaaaacag tgaagtgttt       780
     tggatgtgga ggttcaggtc actttgtaag tgaatgtaaa aagaaactta ctgataacaa       840
     kaacagaata cagtgttcta catgtggaaa acatcatttg ggagagtgtt gggcgaaaca       900
     ggaactgcct ccatgcaaat actgcgaaaa aaaaaaaatc atccakcaga aaaatgcttc       960
     tttaaagaag accatgagaa gatgaagaaa gcaccaaaga cagtttttct ctcagaagcc      1020
     cttgtgacag aaaatcaaga aaaggaaatt aataaagtag atacagagtt cgttgtagac      1080
     agtgggagta atgagcatat gtcacacgaa atgaaaatta tgtcaaatgt gaagagctgt      1140
     gaaggtacaa aaattaagat tgcagatgga aattttatat attmtaatct tgttggcaca      1200
     gttgaatcac agcaggtgat gttgacaaat gtaatacatg ctcctgaact gtcaagaaac      1260
     ttgttgtcag taaatgccat tactgaaaaa gggggagtgg caatatttga caaggaaaag      1320
     gtgaagattg tgaaagatgg aaatgttatt ttagaaggca ataaaacaga aaatggactg      1380
     tatatcatca atatcaaagt ggactctata aaagaagtac tgctgacaca aaagaagaaa      1440
     atcattcagt ggcacaagaa actaggacac ctgaactaca gttatctaaa gaaaatacca      1500
     gaactgtgtg acggagtgga caagattgtg ttagaagagg aaatgccttt ttgtgaaact      1560
     tgtgtcatgg caaagcaggt aagaaaacca ttcaacacag tgcggtacag agcaacaaga      1620
     cctctggaaa ttattcacac tgatgtatgt ggtaagataa gcccatcaac ttaccacaat      1680
     gaagaatatt ttttaacatg tcttgatgat tacacacatt tcttgaaagt gtatcttttg      1740
     catacwaaag atgaaacaga aaattacatc aaggaatatg taagtgaaag tgaagctcat      1800
     ttcaatctga agacagaaaa aataagatgt gacagaggag gagagtacag aagtgctgat      1860
     tttaaagaat ggtgtaaaaa gatgggtata gtgatagact acactattaa agagtctcct      1920
     caactgaatg gcaaagcaga gagaattaat cttactatca tgaacaaagt aagggccatg      1980
     ttgtttgatt cgagaattgg aaataaaaag tggggctatg cagctctggc agtagcttat      2040
     cttatgaaca gaagtcctac tacgctgtwg atgtgactcc gctcaaatgt ggtacgkaag      2100
     aasaccaact ttgtctagac tgggtatttt tggatctgtg tgttcacaaa acgtcttggg      2160
     catttaaaaa aaaaactgag tgtaagaggt gaaagaggtg ttcttgtagg atatacagac      2220
     aatggctatg tcatatggaa tcgtaagaca ggaaaattca ctgaagcaag agatgttgaa      2280
     tttactcatc agtatgaaga cagagaagag gaaagcaaag aagaaggaat aaatctaact      2340
     gaagaagaag aaagaccaga agattttgat gatgaagaag aaagaagaga tgacccagat      2400
     gaagaaasaa gaggagatcc agaagaagat acagaaacat atcagagacc aagacgtcag      2460
     atacatttgc caaagagata tgatgattat gtcatgctca catacaagga gtgcactgaa      2520
     aatgaagaca aagaaaactg gatgaaggct ataaatgaag agaaagaatc actgaagaaa      2580
     aatgaaacat ggactctggt ggataaagaa atggctcatg gaaaagaaat agttacagga      2640
     aaatggattt tcaagaaaaa ggacaatgga aagtacaaag ctaggctagt tgcaagagga      2700
     tgtcaacagg atcaaggaaa actggatttt aaagatattt ttagttctgt tgtacaaact      2760
     aattcactga gatacctatt tgcacttgct gcacatgatg atttgacaat tatgacattt      2820
     gatgtcaaaa cagcctttct taattggtga actgaaagaa gaaattttca tggaagttcc      2880
     agaaggatac aamgcacctg ggaaaatttg cctgttaaaa aaggcacgta tggattaaaa      2940
     caagctcctt tgcagtggaa taagaaactg aatgaatttc ttaaacatga aaatctcatc      3000
     caactgaaat ctgaccaatg tgtgtataaa gcaaatactg ggaaaaaatt gtatctagct      3060
     gtacatgttg atgacgggat tctatttgga gaagacatct gccaaatgaa aaatcttctt      3120
     aaaaactgaa gaaaaatttt gacattacag ttgatgaaga tccaacagta tatcttggaa      3180
     tagaaattga aagaacaaaa gaaggtattt atatccatca agaaaaatat gctacagaag      3240
     tagtgaaaag gtatcaaatg gaaaattcaa aaagtgtgac aactccaatt tcatcacaag      3300
     ccaatggtac gaagtcagat ttcccatatc gtgaagcaat aggcagtcta ttgtatttag      3360
     catgcaaaac aagattggat cttatgcagt aaattatgaa agcagatcaa tgagtaatcc      3420
     aaatcattcc gacattcaaa atctgaagag aacattgagg tacctgaatt caacaacagg      3480
     gagtggaata ttctatccat caagaaaaca aaacaagaaa tagtagctta ctgtgatgca      3540
     gattttgcag gtgacaggaa agacagaaaa agcactacag ggtatgtatt tatgtacaat      3600
     aatgctccaa tctcttggtg ttgcaagaaa cagtgtgtgg ttgcattatc tacaactgaa      3660
     gcagaataca tttctgcagc acaatgttgt caagaaatga aggtttttaa gacttttcta      3720
     gaacagttgc tgagtgaaaa catcaaaatg acactgtgtg tggataacca aagtgcaata      3780
     gcaatgataa aatcaggtca aatgtcaaga agaagcaagc acattgatgt aaagtaccat      3840
     ttcataagtg atgaactgaa tcatggctgg ttcaagatac agtactgtga aactcaagaa      3900
     caacttgcag acatactaac taaacctcta caaagtatta ctttcaaaag actaaagaaa      3960
     aagttgatgt ttgacagata catataaaga gacagtgttt gaattttgaa ttttttttat      4020
     taacatattg ttttgtttaa gggagtg                                          4047
//
ID   Copia-12_LMi-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-12_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-253
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3096-3096 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 253 BP; 91 A; 34 C; 43 G; 85 T; 0 other;
     tgttgatatt taaagacaaa gtgcagtaat caaagacaat atgtttcttt ttaatgaaag        60
     ccacagttgg cattactata tttattttgt gttatgttgg tagtgtgagc tattgctgtg       120
     gaagaaaaaa acaaacaaac agtggttact aataaagtcc ttttccagaa agatgtttgt       180
     gttgtgcttc gtactaaaat aaaatacctc aactaagaaa tataaaacca gattttagct       240
     acttatctcg aca                                                          253
//
ID   Copia-12_SI-I repbase;    DNA;    INV; 4404 BP.
XX
AC   AEAQ01030007;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_SI_;
KW   Copia-12_SI-LTR; Copia-12_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4404
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030007; Positions    1629    6032.
XX
CC   Positions [1618-2118] - Integrase core
CC   'TATAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..4266
FT                 /product="Copia-12_SI-I_1p"
FT                 /translation="MEINIDEDARYRVPLFDGTNYSNWKFRLEVLLDEKDL
FT                 LRYVETPLQEILAQFQIAAGDTSEVRAQKEKSREAAQKSAKRCRGLIIQKI
FT                 AESHLEYIKDKTSAYDTWETLKQIFERKSVANQIRLKRKLLCMKFNPTQEN
FT                 LENHILKFDRIVKDLKSSGSTMEENDIICHLLLTMPSEYDAVETAIETVSQ
FT                 DQLTLSFVKGRLFDEEAKRGTRKPKPKNEFQPNSVFVAQTKTRNSEYQQGN
FT                 FKGQKGNAGSKSFTFTCHNCGLAGHKRSQCKKPQQPYKNFNTSTQAHVTQD
FT                 NDNQPKEKSSSKAAFTFLSCENSQEIEKISKERWYLDSGASEHLSSQESKM
FT                 YNIRNLEVPVKIKVAKSGSYLIAKKRGDLKASFCVNGQYNDIIISNILIVP
FT                 DLETNLISVRKLEIKGFKIIFENGMGKIFYKGNIAAIAYRKQKLYELEFSN
FT                 TAEEKALNSEVANNIELWHKRLAHLSYDGIKKLKTLVDGIQVEKVNSGPCK
FT                 ICMEGKQAKLPHKGLRNKTTRPLELVHSDVMGPISPTSYDNMRYIVSFIDD
FT                 FTHFTVIYLMETKDEVFKYFKMYQAMATAHFNLKISRFRCDNGREYISRKL
FT                 KEEFESKGIQFEYTIRYTPENNGVAERMNRNIMEKARCLLLESGLQKIFWS
FT                 EAVMNAVYIINRCPTAALENSVPAEKWYGKRQNAQKIKLFGSLVYLHVPKE
FT                 VRRGKLDSRSERCLMLGYCSNGYRLWNLKENKLTTGRDVVFDEEKTAKTLF
FT                 KKQDFYQGTNIDDNEEKDTQEDAQEELPVEEKTTSEDYEENSNTGINSEME
FT                 YNMKEKQGISGKNQSPTLSKNKIESSDVHDSEELGRGRRQKWAPKRLEDFV
FT                 TNLWPSWNNEEEEDYMAYALSAEEFVDNVPQCYKEIEEREDKEDWKQAVHE
FT                 ELTSLIENGTWSLTPLPAGKKAIDSKWVFKVKRDEDGNPLRYKARLVIKGC
FT                 AQKKGLDYKETYAPVAKISTVRILLSIINYKDFIAHQMDVKNAFLQGNVHE
FT                 DIYMKPPDGFDIKDKSVVCKLNRPLYGLKQAPREWNFRFDSFVKELEFKQS
FT                 KNDECLYIYRKGTVTMYLLLYVDDFIITSNNLEFLRIVKEKLMKEFKMTDL
FT                 GELKFFLGIKIERKTQGMYLSQRQYIINLLSKFNMSNCKPVKTPIEEGFPG
FT                 EDVLKEKLITDKPFKELIGCLMYLMNTSRPDLSLSVNKLSRFQRCPTESLW
FT                 KGVKRILRYLQSTVDLALLYPKNSKLKEQLVGFADADWAGDTFDRKSTSGF
FT                 MVKLFGATVTWTTRKQNTVALSSTEAELVSLCELICDLLWIVRILLDLDLV
FT                 IDFPITLFEDNQSCIRAALSNNFNKRLKHVDVKYHFICDLIKKKEIFEVKY
FT                 LSTNAQTADILTKPLGGTKFCIFRESLGLSLID"
XX
SQ   Sequence 4404 BP; 1652 A; 643 C; 887 G; 1222 T; 0 other;
     ggttatgggc ccagcccacg ttgcttgaaa taaaaacact cttggaaaca cattggaatt        60
     tttggaagaa tcccggaaat ggaaatcaat attgacgaag atgctcgata ccgtgttcct       120
     cttttcgacg gaaccaatta tagtaattgg aagtttcgtt tggaagtctt gttagacgag       180
     aaagatctgc tgcgttatgt tgaaacgcct ctacaggaaa ttcttgctca atttcaaatt       240
     gctgcaggcg atacatctga ggtaagagca caaaaagaaa aatctaggga agcagcacag       300
     aaatctgcaa aacgttgcag agggcttatt attcagaaga tagcggaatc tcatctcgaa       360
     tacatcaagg acaaaacatc tgcatatgat acatgggaaa cgctaaaaca gatctttgaa       420
     aggaaaagcg ttgcaaatca gattcgttta aaaaggaaat tattatgcat gaaattcaat       480
     cccacgcagg agaacttaga aaaccatatt ttaaaatttg atcgaatcgt aaaggattta       540
     aagtcatcag gctcaactat ggaagaaaac gacattattt gccatctgct tttaactatg       600
     ccatccgaat atgatgcggt agagacagcc atagaaacag taagtcaaga ccaattaact       660
     ttatcttttg ttaaaggtag actgtttgac gaggaagcta aacgaggaac gaggaagccc       720
     aagccgaaga atgaatttca accaaattca gtatttgtag cacaaactaa aacaaggaat       780
     tctgaatatc aacaaggaaa tttcaaaggt caaaagggca acgcaggaag taaatcattc       840
     actttcacgt gtcataattg tggtttagca ggccataaaa gatcacagtg taaaaaacca       900
     cagcagcctt acaaaaattt taatacttcc actcaagctc atgttacaca ggacaacgat       960
     aatcagccta aggaaaagtc atcgtccaaa gcagctttta ccttcttgtc atgtgaaaat      1020
     tcgcaagaaa ttgaaaaaat ctccaaagaa agatggtatt tagattctgg agccagtgaa      1080
     cacttatcat ctcaggaaag caagatgtat aatatcagaa atttggaagt acctgtcaag      1140
     ataaaagtag caaaatcagg aagctacttg attgccaaga aaagaggtga tttaaaggca      1200
     agtttttgtg taaacggtca atataatgat attattatta gcaacattct aattgtgcca      1260
     gatttggaaa ccaatctaat ttcggtaaga aaattggaga taaagggttt taaaatcatc      1320
     tttgaaaacg gaatgggaaa gatcttctat aaaggtaata ttgcagcaat agcttataga      1380
     aaacaaaaat tatatgaatt agaattttct aacactgcgg aggaaaaagc cttgaatagt      1440
     gaggttgcaa ataacattga gctgtggcac aaacgcttag cacatctaag ttatgatgga      1500
     attaaaaaat taaaaactct agtagatgga atacaagtag agaaggttaa ttcaggtcct      1560
     tgtaaaattt gcatggaagg aaaacaagct aagctacctc ataaaggtct gagaaacaaa      1620
     actacaagac ctctggaatt agttcacagt gatgtcatgg gaccaataag tccaacgtcc      1680
     tatgataata tgcgatacat tgtttcattt atagacgact ttactcattt taccgtaatc      1740
     tatttaatgg aaaccaaaga tgaagttttt aaatatttta aaatgtatca agcaatggcg      1800
     actgcccatt tcaatttaaa aatcagtcga tttagatgtg ataacggcag agagtacatc      1860
     tcgaggaaac tcaaagaaga atttgaatct aaaggaatcc aatttgaata taccattaga      1920
     tatacaccag aaaacaacgg agtagcagaa aggatgaata ggaatataat ggaaaaagca      1980
     agatgtctat tattggaatc aggactacaa aagatttttt ggtctgaagc agttatgaat      2040
     gctgtttaca taatcaatag atgtcccact gcagctttgg aaaattctgt acctgcagaa      2100
     aaatggtatg gaaagaggca aaatgctcaa aaaataaaat tatttggaag tctggtgtat      2160
     cttcacgtgc caaaagaagt aagaagagga aaacttgata gtcgatctga aagatgtcta      2220
     atgctaggct actgttctaa tggatataga ctgtggaatt taaaggaaaa caaactgact      2280
     acaggaagag atgttgtttt tgacgaggaa aaaacggcga agactctttt caagaaacaa      2340
     gatttttatc aaggtactaa cattgatgat aacgaagaaa aggatactca agaggatgct      2400
     caagaggaat tacctgtaga agaaaaaaca acgtcagaag attatgaaga aaacagtaac      2460
     acaggaataa attcggaaat ggaatataac atgaaagaaa aacaaggaat atcaggaaag      2520
     aatcaaagtc ccacactatc gaaaaataaa attgaatcat cagatgtaca tgatagcgaa      2580
     gaattaggaa gaggaagaag acagaagtgg gctcctaaac gactagagga ttttgttaca      2640
     aacctttggc caagctggaa taatgaggaa gaagaagatt acatggccta tgctttgtct      2700
     gcagaagaat ttgtagacaa tgttcctcag tgttataaag agatagaaga aagagaagac      2760
     aaagaagatt ggaaacaagc tgtacatgaa gagttgacat ccctgattga aaacggaact      2820
     tggagcctaa caccactgcc tgcaggaaag aaagcaatcg acagcaaatg ggtatttaag      2880
     gtaaaaaggg acgaagatgg aaatccctta aggtacaaag ccagattagt aattaaaggt      2940
     tgcgcgcaaa agaaagggct cgattataaa gaaacgtatg cacctgttgc taaaatatct      3000
     actgttagaa tcttactttc gattattaat tataaagatt ttattgctca tcaaatggat      3060
     gttaaaaatg ctttcttgca aggtaatgta catgaagata tttatatgaa gcccccagat      3120
     ggatttgata ttaaagataa aagtgtagtt tgtaaattaa atagaccatt atacgggtta      3180
     aaacaagctc ctagagagtg gaattttcgt tttgatagct ttgttaaaga gttagagttt      3240
     aaacaatcta aaaatgatga gtgtttatat atttacagga aaggaacagt aaccatgtac      3300
     ttattactct atgtagatga ttttattatt actagcaata acttagaatt tttaaggatt      3360
     gttaaagaga aattaatgaa agaatttaag atgacagatt taggagaatt aaaatttttc      3420
     ttaggaatta aaatagaaag aaagacacaa ggaatgtatc tgtctcagcg tcagtatatt      3480
     ataaatttgt taagtaaatt taacatgagc aactgtaaac cggttaaaac tcccattgag      3540
     gagggctttc caggcgagga tgtcttgaag gaaaaattaa taaccgataa gccttttaaa      3600
     gaattaattg gttgtcttat gtatttgatg aacacatcaa gacctgatct gtctttgtct      3660
     gttaataagt taagcaggtt tcaaagatgt cccacggaaa gtctctggaa aggagtcaag      3720
     cgaattttac gatatctgca aagcactgtt gacttagccc tgttatatcc taagaattct      3780
     aaattgaaag agcaattggt tgggtttgcg gatgcggact gggctggcga tacgtttgac      3840
     cgaaaatcaa cgtcaggatt tatggtaaaa ctttttggag ctactgttac ctggacaact      3900
     agaaagcaaa atacagttgc tttatcctcc acggaagcgg aacttgtgtc actttgtgaa      3960
     ctaatttgtg atttactttg gattgtaaga attctattag atttagattt agtaattgat      4020
     tttccgatca cactgtttga agacaatcag tcttgtatac gcgctgcatt atctaataat      4080
     ttcaataagc gactaaaaca tgtggatgtt aaatatcatt tcatttgtga tctaattaaa      4140
     aaaaaggaaa tttttgaagt taaatatctc tcgaccaatg ctcaaacagc tgatatatta      4200
     accaagccac ttggtggaac aaagttttgt attttcagag agagcttagg attaagttta      4260
     attgattaat agcttaagaa tgtatgtaat acgtttcttt taactattct gtgtaacttg      4320
     ccagaaatag gttgacaaag tttattcact gttgatgcca actaggatag taagttttgt      4380
     ttgtaatgac aaattgaggg cggg                                             4404
//
ID   Copia-12_SI-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   AEAQ01030007;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-12_SI_;
KW   Copia-12_SI-I; Copia-12_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-320
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030007; Positions    1309    1628.
XX
SQ   Sequence 320 BP; 94 A; 64 C; 59 G; 103 T; 0 other;
     tgttgtaatg tgcaatttgt tgttactcaa ctacgtttaa acattatgat tctattggtt        60
     ggtaagagct ttcgcgcctt gtgactacga acggactgag tgctctcgcc ctctctccct       120
     aaccacgctc tgccacgcgc tcatacgttt ttgtattttg taaaggaaca ataaatgtat       180
     tattacatta tagtaattag aaggtctaat ctaccctgtc gctacaaact gtaagtagta       240
     gagatttaac aaaaggagga atcaaagtca gactactaaa tcggtgtcag tcatattcgt       300
     cggaacctct aatattaaca                                                   320
//
ID   Copia-130_AA-I repbase;    DNA;    INV; 5044 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-130_AA_;
KW   Copia-130_AA-LTR; Ty1_copia_Ele193; Copia-130_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5044
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2579-2977] - Integrase core
CC   'GAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1666..2610
FT                 /product="Copia-130_AA-I_1p"
FT                 /translation="MEEQALKIGGRGKQQNTAECYFCGIQGHRKKDCRAYL
FT                 AEQNSNEKSKKRSYKEKAKVVHEDDQNKAFTFMVRNRRQASKSRIVDSGAT
FT                 SHLANDHKSFQRLDSSARPEITGADGNSIRTAGIGDCVIQCLDSKGKEVKI
FT                 TLTEVIYAPDVEGNLLSITKLTEKGVRAMFEANRCSMWINGEEIATADRVS
FT                 GLYRLNTVEESRSLMVANRQHNKDCQHLWHRRLGHRDPDVLGEIERKNLVS
FT                 GMQVKNCGIQLTCECCIEGKMARPTFAKEAVKTSKEILDIVHSDVSGPMTK
FT                 TQGGCRYYLTMIDDHSRCTWYTF"
FT   CDS           2579..5044
FT                 /product="Copia-130_AA-I_2p"
FT                 /translation="MITAVARGILFEKKSEVEGRIREYVRFVETQFGRKPK
FT                 AIRSDRGGEYTSHSLRKFYVSEGIKAEYTAGYAPQQNGVAERKNRSLNEMG
FT                 LCMLLDAGLPRKFWAEAVNTAVYLQNRLPTKATDITPFEVWFGRKPDLSHL
FT                 RVFGCGVYAWKPQQKRKKFESKAVKLTFVGYATDSKAYRLLNTKTGEIVIS
FT                 RDVRFLEVDELAKKIPDGSMEKPAIDEAEETEVPLQLTDLENVAPEVAEHR
FT                 DEFEDPEVEDDEEAYELAEQTLSDGDESQLNDDTMKQAVVRRSTRPNIGVP
FT                 PDRFQEVVSLAVDLAEPKTFAEAVSGAEQVQWKAAMKEEMTSHRENGTWEI
FT                 TELPPGRTAIGCKWVYKRKQDETGQVTRYKARLVAQGFSQKFGTDYDLVFA
FT                 PVIKQATFRTVLTLASRDRMLVRHVDIKTAYLYGELQEEIYMKQPPGFMSS
FT                 NVNDVCRLRRSLYGLKQAARVWNHRIDGVFKKLGFHSSTADPCLYVRRTKN
FT                 GFLYLLIYVDDIVVVVRTESEYRALVAALKEEFKITELGDLRFFLGLQVRK
FT                 KNGRYSLNQRSYIIKVLSRFRMENAKTSRIPMMTGFLQQKEEELMQNQGEF
FT                 QNLIGCLLYIAVNTRPDVAIATSILGRRVSNPTTADWNEAKRILRYLKGTA
FT                 DHELHLGGGEPCEMECYVDADWAGEIGERKSNTGYIFKLGGGLVNWRCSKQ
FT                 TSVSLSSTEAEYIALAECLQELQWLRKLMDDLGESMKLPVRVNEDNQSCIA
FT                 LAVADRTTRKSKHIDTKYCYVKDLVKNGIVTIQYCPTDKMEADLLTKPLGA
FT                 VKLKQLREAIGVRLANVEEE"
XX
SQ   Sequence 5044 BP; 1514 A; 992 C; 1416 G; 1121 T; 1 other;
     ggttatgggc ccagataaaa accactaggc ggatttgaag tccagtagga gtgattattt        60
     ggaatccaaa gtcaagaagc gtagcagttg atatcctgtg atggagtggg gacgagtccc       120
     gaagctcaac agttccaact atcagtcgtg gtcgtttgcg gtggaagcgt tgctgagacg       180
     ggagcaatta tggaaatttg tcgacccagg gacagcgccg gctgaagtaa ccgacgcgtg       240
     gacgaatggt gacgaaaagg ctctgtccaa ggtacctgga attctaggta aagtaaccta       300
     agcagtcagt ggaagcgggg tgcgattcac cgttgtcgag gcggaggcga cggcaaaatc       360
     gacttggaag gcgttgaaag aatcttcaat cacaktgaga ctgagtcgct cgaagctatc       420
     cgtgttggag agagcagtgg aagcttatct tgcatcggat accctcttta ttttactgaa       480
     tgaactactt aagactggag agttacggta ttcgagatgc aagaatgctt gaaagttgca       540
     cttatttttc gaggacttcc ggaatcttct aaccctttga cgacggcttt ggaagctcgt       600
     acaagaagaa gatcgtgacg cttgaatttg tgaagatgaa actcatcgac gaagctcaat       660
     ttccaaacgc agtccgaacc gaagggcgga atggaagaac aagcttcgaa gatagggggc       720
     agatgtaagc agcaaaaatc tgtggcgtgt tacttccgat gtggaattca agatcatcgg       780
     attccataaa aggattgccg ggcctgtcct gcggagcgag agctccaacg aaacacggtc       840
     caagaagagg tcctgcggga aaaggacgga agtgagtgca ggggggtgca ccaaaacaag       900
     gcgttcacgt ttatggtgcg aaatcgtaga caggcatcga aatcctggat agtggactcc       960
     ggcgcgacat cccatcttgc cgaatgatca caagtacgct ccagcgtttg gacagttcag      1020
     cgcgtccgga aatcacaggt gcagatggaa actcgattcg tgctgctgga ataggagatt      1080
     gcgcgatcca gtgttctcga tagcaaggca tgctagtatt gcatagcata gactgactgt      1140
     acagctgtca tatgcgttgc tactccgtga ttgatcggaa ctggcaattc cacgaattgc      1200
     actacgaccc aaatagatac cagggctctg tctacaattc aacttacagt ggaagagcag      1260
     tgcagattca ccattatcga ggcagaaacg acgccggcaa aatcccgcac ttggaaggcg      1320
     ttgaaggaat atcacagtga agactgtcgc ttggacagaa agtgactctt ttgaagcaga      1380
     tcaccaatca aaacgggtac cgtgttggga gagagcagct ggaagcccct tatcgggttg      1440
     cggccatata ctgaagaact actcaagact ggagcagttc cggtttccag acgtgcaaga      1500
     atgcttgaaa cgtcgcactt atcctgtcga ggacttccgg agatctttta accctttgac      1560
     gacggctttg gaagctcgta aagaagaaga tctgacgctt gaatttgtga agatgaacca      1620
     ctcagtcgga cgaagctgac agagcagtcc aaaccgaagg gcggaatgga agaacaagct      1680
     ttgaagatag gaggcagagg taagcagcaa aacactgcgg agtgttactt ctgtggaatt      1740
     caaggtcatc ggaagaagga ttgccgggcc tatcttgcgg agcagaattc caacgaaaag      1800
     tccaagaaga ggtcctacaa ggaaaaggcg aaagtagtgc atgaagatga ccaaaataag      1860
     gcgtttacgt ttatggtgcg aaatcgtaga caggcatcga aatcccggat agtggactcc      1920
     ggcgcgacat cccatcttgc gaatgatcac aaatcgttcc agcgtttgga cagttcagcg      1980
     cgtccggaaa tcacaggtgc agacggaaac tcgattcgta ctgctggaat aggagattgt      2040
     gtgatccagt gtctcgatag caaaggcaaa gaagtgaaga ttacgctgac tgaggtcatc      2100
     tacgcccctg acgttgaagg aaacctgttg tcgatcacga agctcacgga aaaaggtgta      2160
     cgtgctatgt ttgaagccaa tcgatgcagt atgtggatca atggtgagga aattgcgacg      2220
     gcagatcgag ttagtggcct gtaccggctg aatacggtag aagaatcgcg ttccttgatg      2280
     gtagcaaatc gtcaacacaa taaggactgt caacacttgt ggcatcgcag acttggccat      2340
     agagatccgg atgttcttgg agaaatcgaa cggaagaatt tggtatctgg tatgcaagtt      2400
     aagaattgtg gtatacagtt gacgtgtgaa tgctgcatcg aagggaaaat ggcccgaccc      2460
     acatttgcaa aggaagctgt gaagacttca aaggagattt tggatatcgt tcacagtgac      2520
     gtgagtggcc cgatgacgaa aactcaaggc ggttgcagat attacctcac catgatagat      2580
     gatcacagcc gttgcacgtg gtatactttt tgaaaagaag tccgaagttg aaggcagaat      2640
     tcgtgagtat gtacgttttg ttgaaactca gttcggaaga aaaccgaaag ccattcgatc      2700
     ggatagaggg ggcgagtaca cgagtcacag tttacggaag ttctacgttt cggaaggtat      2760
     caaggcagaa tacacggctg ggtatgcacc ccagcaaaac ggcgtggcgg aacgaaaaaa      2820
     tagaagcttg aatgagatgg gactgtgcat gctgctcgac gctggactac cgcggaagtt      2880
     ttgggcggaa gcagttaata cagcagtata tttgcagaac agacttccga cgaaagcgac      2940
     tgacatcaca ccattcgaag tatggtttgg aagaaaaccg gatttaagcc acctgagggt      3000
     gttcgggtgc ggagtgtatg cttggaaacc acagcaaaaa cgtaagaagt ttgaatcgaa      3060
     ggcagtgaag cttacgtttg ttggatatgc taccgacagc aaagcgtaca gattattgaa      3120
     caccaagacg ggagaaatag tcattagccg ggatgtgaga ttcctggagg tggacgaatt      3180
     agcgaagaag ataccagacg gttccatgga aaagccagca attgatgaag ctgaagaaac      3240
     agaagttcct ctacaattga ccgatttgga aaacgtcgcg ccggaagtag ctgaacatcg      3300
     tgatgagttt gaagaccccg aagtcgaaga tgatgaggaa gcctatgagc ttgcggaaca      3360
     aacattatcg gatggtgacg agagtcaact aaatgatgac acgatgaaac aagcagtagt      3420
     acgacgatca actcggccga acattggagt gccgcctgat aggttccaag aagtggtaag      3480
     cctggctgtg gatctagctg aacccaagac gtttgcagaa gcagtatctg gtgctgagca      3540
     agttcagtgg aaggctgcaa tgaaagaaga gatgacgtca catcgagaga acggaacatg      3600
     ggagattacc gagctaccac ctggtcggac agcgatagga tgtaaatggg tctacaagcg      3660
     gaagcaagat gagactggtc aagtgacaag atataaagcg agactagttg ctcaaggatt      3720
     ttcgcagaaa ttcggaacag attatgatct agtgttcgct cctgttataa agcaagcaac      3780
     atttcgaacc gttttgacgc tagcaagcag ggaccggatg ctggtacgcc atgtagacat      3840
     caagacagcc tatctgtatg gagagctgca ggaggagatc tatatgaagc aacctccggg      3900
     tttcatgagc agcaatgtga acgacgtgtg caggttacga cgcagtctgt atggactcaa      3960
     gcaagctgca agagtatgga accataggat cgacggagtg ttcaagaaat tgggcttcca      4020
     tagttcaact gcggatccat gcctctacgt gcggcgaacg aagaatggat tcttgtattt      4080
     gctgatctat gtagatgaca ttgtcgttgt tgtacgaacg gaatccgagt atcgagcatt      4140
     ggtggcggcg cttaaggagg agtttaagat aacagaattg ggagatttac gttttttcct      4200
     cggactgcaa gtgaggaaga aaaatggaag atactcattg aatcaaagaa gctatataat      4260
     aaaagttttg tctcgattcc gaatggagaa tgccaagaca tcgagaattc caatgatgac      4320
     cggctttcta caacaaaagg aggaggaatt gatgcagaac caaggagagt tccagaacct      4380
     gatcggatgt ttgttgtata tcgccgtcaa tactaggcct gatgtggcaa ttgcaacttc      4440
     tatccttgga cgacgagttt caaatccaac cacagcggac tggaatgaag caaaaagaat      4500
     acttcgatat ctcaaaggca cagcggacca tgaattgcac ttgggtggag gagagccatg      4560
     cgagatggag tgctacgtgg acgcagactg ggctggagag atcggtgagc gaaagtcaaa      4620
     caccggctac attttcaagc taggaggagg tcttgtcaac tggagatgca gcaaacagac      4680
     tagcgtttcg ttatcaagta ctgaggcgga atacatcgca cttgcagaat gtcttcaaga      4740
     gctgcagtgg ttgcgcaagc tgatggacga tctaggcgag tcgatgaagt taccagtacg      4800
     tgtgaacgaa gataatcaaa gctgtattgc ccttgctgtt gcagatagaa ccactcgaaa      4860
     atctaagcat attgacacta aatactgcta tgtgaaggat cttgtgaaga acggaattgt      4920
     aactatccaa tattgcccaa cggataagat ggaagctgat ctgttaacca agcctttggg      4980
     agcagttaaa ctgaagcagc tgagagaagc gattggagta cggctggcca atgttgagga      5040
     ggag                                                                   5044
//
ID   Copia-130_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-130_AA_;
KW   Ty1_copia_Ele193; Copia-130_AA-I; Copia-130_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-172
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 172 BP; 53 A; 35 C; 35 G; 49 T; 0 other;
     tgtgagaggc cacgtgctca gtagcatagc atcgtagcaa cataggcgta gcaaggtgta        60
     acatagtaac ctagttgact tgttatgttg aataaataag tttttcattc cctgttgata       120
     aatcactcaa acaagacgtg tttcaatacg cgccagctgc ataactctat ca               172
//
ID   Copia-131_AA-I repbase;    DNA;    INV; 4390 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-131_AA_;
KW   Copia-131_AA-LTR; Ty1_copia_Ele140; Copia-131_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4390
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1903-2406] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..4377
FT                 /product="Copia-131_AA-I_1p"
FT                 /translation="MENRLKRVIVPLFKGDEKSFPFWKKRMEQHFKFEGLL
FT                 HTLEKTPEEEDFFQPVAGASAAAETERKDKLQARLKEEDAAVNELLLAIDD
FT                 EPMGHIMHCAYAKDIMDRLGEIFMKRGPMAMLGLRTKLLSLKSRKFTCLKQ
FT                 LFATHQEIIRDLESMGEVIASTEKLTSLLVAIPDEFQHLIGALSVLRKDDL
FT                 DTMSLEQVQRVFLDAEEGKTKRNTPGPSQVAMTAPQQNYRNLKCFQCGRYG
FT                 HKMRNCREARRRKEASKPTFHTHPGGKKRDVALVTRQNGAFMVRIPLDELN
FT                 PDLRRDCRVFQMDFKRLPVPSPTFGGVTLLDSGASNHMFRDAQMFNEMWDY
FT                 VANIETAKEGEMMRTRRAGNVNLRTNKNFNVHLYNALFVPNLNFNIVSVSR
FT                 IESTGKAVLFRNGGVEILDNDGTVILTGKRVNGLYILDIEFVGYANKVFAS
FT                 KMLSDAELWHVRYGHLGAQNLNKLVRDNMVERLDVELSAMSDCPFACKSCI
FT                 YGRQTREVFDNSITSRSNRPLELIHSDVCGQLPEETYDGCRYFVSFIDDYT
FT                 HFTVVYLIRYKSEVLDKFREYEAMATAHFNLRIAKLRTDNGGEYFGGEFVR
FT                 FCRERGIQMTPTAPYTPQQNGVSERMNRTLMEKVRTILHESGCPFMFWGEA
FT                 LYASTYTLNRGPASALSVPKTPYEMWFGVKPDVSKLKVFGCIAYTHVNMEY
FT                 RTKLDKKSRRLCMMGYAPNGYRLWDENFDRIAVSRDVKFDEHHFYFPKVDD
FT                 ELQENPNFCEVEKRPELEIIEVENDLPLNENSEDDFVSVGEPSENEFQDIP
FT                 EQEGRPQRTIRPPAWLRDYETVALSLNGSGDIPQNIDELRKRTDWDQWKQA
FT                 IDEELRALKENNTWTLVDELPEGHKAINSMWIFNIKDGETVRYKARLVAKG
FT                 CSQRPGIDFSDTFAPVAKMTTIRTMLSIAVKKNWIIHQMDVKTAFLNGNLN
FT                 EEVYMKLPRDENGIVKICKLNKSLYGLKQAGRNWNQRFNEVVTQLGFQRLN
FT                 SDTCLYKCPEKDLFIILYVDDILLFGSNISGIKWIKEKLSDYFKMKDLGDV
FT                 KNFLGLEISRNLERGTIELSQQSYVDKILDTFGMKDCRAASTPMDLNCKWV
FT                 RSEKCTDKPFKELLGCLQYLTLMSRPDITIAVSILSQFQSMPGDEHWVGLK
FT                 RILRYLHGTKTYRLVYSREKDDEPLKGYADADFANDIEERKSNSGNVFLVY
FT                 GNIVSWKSKRQQIVTLSSTEAELVSLCEAGKEGVWISNLLREVGISSIPFT
FT                 IYEDNIPCIRISEEPREHQRTKHIDVRYMYVRNLIHEKKIVLEYIRSEDQI
FT                 ADMFTKPLMKSRFNKMCELIKMIN"
XX
SQ   Sequence 4390 BP; 1331 A; 784 C; 1076 G; 1199 T; 0 other;
     ggttatgggc ccagggctaa gtgactgtct tgaagaattg tttggacgga aattttctcc        60
     gtaaacaatt gaatacaagt ttgctcagtc ggagaccttc ttttctgagg ggcaagctta       120
     gagattagga gtgagcggtt gttcagacgg agaccctctt ttctgtggga caatcgtttg       180
     cgcattcgag tttgttctgt cgttgatctt tccgaggagc aagctcaggg gatacttgag       240
     aaaaagtgtt gttcagacgg agaccatctt ttctgtggga cgcactttga tcaaagattt       300
     ttgggtgttc taagacagtc tgatcagtga gtatactttc ttccaggagg tttacctcag       360
     attacaaaca tggagaatcg tctcaaacga gtgattgttc ctttgtttaa gggggacgaa       420
     aaatcgttcc cattttggaa gaaaaggatg gagcaacact tcaagtttga aggtttgttg       480
     cataccctcg agaagactcc cgaggaagaa gatttcttcc aaccggtggc tggtgcctca       540
     gccgcagcag agactgagag gaaagacaaa ttgcaagcgc gtcttaagga ggaagatgcg       600
     gcagttaatg aactgttgct tgcaattgat gatgagccga tggggcacat tatgcattgt       660
     gcttatgcga aggacataat ggatcggcta ggagagattt ttatgaagcg tggcccaatg       720
     gctatgcttg ggcttcgaac gaaactactt tcgctgaagt cacgaaagtt tacctgtttg       780
     aagcaacttt ttgcaaccca ccaagagata atcagggacc ttgaaagcat gggtgaggtt       840
     attgcaagta ctgaaaagtt aacttcttta cttgtcgcta ttcctgatga attccaacat       900
     ttaattggag ctctttccgt tttgcgaaag gacgacctcg acacaatgtc acttgaacaa       960
     gtgcaaaggg tgttcttgga tgctgaggag ggcaagacca agcggaacac gccgggacca      1020
     tctcaagttg ccatgactgc accacaacag aattaccgga acctgaaatg tttccaatgc      1080
     ggacggtatg gacacaagat gcgcaactgt cgggaagcgc gtcgccgaaa ggaagcatcg      1140
     aagccgacgt tccataccca tccggggggc aagaaacgcg atgttgccct ggtaacacga      1200
     cagaatggtg cattcatggt gcgtattccc ctcgatgagc tgaatcctga tctcagacgc      1260
     gactgccgag tgttccaaat ggatttcaag cgactgccgg ttccatcgcc cactttcggc      1320
     ggcgttacgc tgctagattc gggagcctcc aatcatatgt tccgcgacgc acaaatgttc      1380
     aacgagatgt gggactatgt tgcgaacatc gagacggcta aagaagggga gatgatgcga      1440
     acacgcagag ccggaaatgt aaatttgcgg acaaataaaa atttcaacgt tcatttgtat      1500
     aacgctcttt tcgttccaaa tctgaacttt aatattgtct ctgtttcgcg tattgagtcc      1560
     actgggaagg cagtcttatt caggaatggt ggagttgaaa ttttggacaa cgatggaacg      1620
     gtgattctta ctggaaagag agtcaatggt ttgtatatct tggatattga gtttgttgga      1680
     tacgcaaata aggtatttgc aagtaaaatg cttagtgatg ccgagttatg gcatgttcgg      1740
     tatggacact tgggagccca aaatttaaac aaacttgtga gagacaatat ggtagagagg      1800
     ttggatgtag aactatctgc catgtctgat tgcccatttg catgtaaatc atgtatttat      1860
     ggaagacaaa ccagagaggt ttttgataac tcgatcactt cgagatcgaa ccgaccactt      1920
     gagcttattc actctgacgt ttgtggtcaa ttaccggaag aaacctatga tggttgtaga      1980
     tactttgttt ctttcattga cgattacaca cattttacag tagtgtatct aatccggtat      2040
     aaaagtgaag tcctggacaa gtttcgggaa tatgaggcta tggcaacggc tcatttcaat      2100
     cttcgcattg ccaagcttcg tacagataac ggtggtgaat acttcggtgg agaatttgta      2160
     aggttctgcc gagagagagg aattcaaatg acacccactg ctccctacac accacagcaa      2220
     aatggtgtaa gtgagcgaat gaatcgtacc ttaatggaaa aagtaaggac gattctacat      2280
     gagagtggtt gtccatttat gttttgggga gaagctttgt atgcttctac atatacattg      2340
     aaccgcggtc ccgcgagtgc attatctgtt ccaaaaacac cttatgagat gtggtttgga      2400
     gtgaaacctg atgtcagtaa actaaaggtt tttgggtgta ttgcatatac acacgtgaac      2460
     atggaatacc gtacaaagct tgataagaag agtagacgtc tttgtatgat gggatatgca      2520
     ccgaacggat acagactatg ggatgaaaac tttgacagga tcgcggtttc gagggatgtc      2580
     aaatttgatg aacatcattt ttatttccct aaagttgatg acgaattaca agagaatccc      2640
     aatttctgtg aggtggagaa aagacctgaa cttgagatca ttgaagtaga aaatgattta      2700
     ccattaaatg aaaatagtga agatgatttc gtgagtgtag gagagccatc tgagaatgag      2760
     tttcaagata ttcctgagca agaaggtcgt ccccagagaa ccattagacc tcctgcctgg      2820
     ctaagagatt atgaaactgt tgccctctcc ttgaatggtt caggtgatat accacagaat      2880
     attgatgaat tgcgtaaacg aactgactgg gatcaatgga aacaagccat tgatgaagaa      2940
     cttcgcgcct taaaagaaaa taacacatgg actttggttg acgaattgcc tgaagggcat      3000
     aaagccatta actccatgtg gatttttaac atcaaagacg gagaaacagt ccggtataaa      3060
     gcaaggctag tagcaaaggg gtgctcgcaa cgccctggta ttgatttcag tgataccttt      3120
     gctccagttg caaagatgac aactattcgg acaatgcttt cgattgcagt taagaaaaac      3180
     tggataatac atcaaatgga tgtaaaaact gcattcctta atggcaatct aaatgaagaa      3240
     gtgtatatga aactaccacg ggacgaaaat ggaattgtta agatatgtaa gttaaataaa      3300
     agtctttatg gtttgaaaca ggctggaagg aattggaacc agcgtttcaa tgaagttgta      3360
     acacaacttg gttttcaaag gctgaacagt gatacatgtc tttataaatg tcccgagaaa      3420
     gatttgttta tcatactata tgttgatgat attttgctct ttggaagtaa catatccggt      3480
     ataaaatgga tcaaagaaaa gctttcggac tatttcaaga tgaaggattt aggggacgtt      3540
     aaaaacttcc taggactgga aatttccaga aatcttgaaa gaggtacaat agagctttct      3600
     cagcaatcct acgttgataa gatactggat acgtttggta tgaaagattg cagagcggca      3660
     tctactccaa tggacttaaa ctgtaaatgg gtgagatcag aaaagtgtac cgataaacca      3720
     tttaaagaac tgttaggttg ccttcaatac ttgacattaa tgtcaaggcc tgacataacc      3780
     attgctgtga gtattttgag ccaatttcag agcatgccag gagacgaaca ctgggttggg      3840
     ttgaagagga ttcttcgata tctccatgga acgaaaacgt atcgcctggt ttattctcgt      3900
     gagaaggatg acgaaccact caagggatat gcagatgctg attttgcgaa cgatattgaa      3960
     gaacggaagt ccaattctgg aaatgttttc ctggtgtacg gtaacatcgt gtcctggaag      4020
     agcaagcgac aacagattgt gacattatcg tcgacggaag cagaactggt ttcgttgtgt      4080
     gaagctggta aagaaggtgt ttggatatca aatttgctac gagaggttgg aatttcgtcc      4140
     attcccttca ccatatatga agacaacata ccctgcattc ggatttcgga ggagccgagg      4200
     gaacatcaac gaacaaaaca tattgacgtg cggtatatgt atgtgcgaaa tttgattcat      4260
     gagaagaaaa ttgtgttaga atacataaga agtgaagatc agattgctga tatgtttaca      4320
     aaacccctaa tgaaatcacg tttcaacaaa atgtgcgaat tgataaaaat gataaattaa      4380
     ggggacgtat                                                             4390
//
ID   Copia-131_AA-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-131_AA_;
KW   Ty1_copia_Ele140; Copia-131_AA-I; Copia-131_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-487
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 487 BP; 140 A; 88 C; 131 G; 128 T; 0 other;
     tggaatatta atttttcatt attttgttgt acggtgtaaa ttgtcggtat aatgaaagtc        60
     ggtgtaattg gcaacacccc ccgaaacata aatagagagc gagagcaaga gcgcagctgt       120
     cataataaag aaaacgagag cgaacagcag gtcgcgtgcg cgcgtaggta ggtagcaagt       180
     tagacatcgc tagtgtacaa tgttcagtga agagttaggt cgggtgggtg caccaaccga       240
     aatcattctc aatcggatgt gatcggaccc cgatggaagt tcactaataa agattgcgtt       300
     aggcaaattt atttgagact tcgaatattt ttgacaccga tccgaaatcc gaaaagccgg       360
     ttgaagttga aggaagccct gcggaagcgg attagttctg gtgagtatat aagtgaactt       420
     aggaagtggt gacgacccct tctggttgct cgctttcttg gttcaaggtt tgctggctct       480
     gccaaca                                                                 487
//
ID   Copia-132_AA-I repbase;    DNA;    INV; 3592 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-132_AA_;
KW   Copia-132_AA-LTR; Ty1_copia_Ele73; Copia-132_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3592
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1489-2028] - Integrase core
CC   'GGGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..3582
FT                 /product="Copia-132_AA-I_1p"
FT                 /translation="MEEEKAERVFLPLFDGTNFAAWKLRMLILLEEHELVE
FT                 CVETYAADVPELQEVDGDSEAVKKTKELARERRKKMDRKCKSLLVSRIHDS
FT                 QLEYIQDKPAPKDIWNALRRVFERRSIASRMHLKRQMLTMRFESGSLQQHF
FT                 LRFDKLVREYRATDAVLEEIDVICHLLLTLGSAYATVVTAIETMPEENLSL
FT                 EFVKCRLLDEETKRKGVEMCSPAASGEAAFSGSKKPPKTYRMKCFGCKQEG
FT                 HKLSECPMKKKNSNKSEKSKAHLAEQGGVCFVGCSRGSEIQCGSRKVNWFI
FT                 DSGCSDHLVNDKSLFDDLKVLDSPIEIAIAKNEQCIVAKHSGTVRVYSEVN
FT                 GKQIECTVKDVLYVPELRCNLFSVMRVDDAGMKVIYEKGKVRIMRGSEIVA
FT                 TGARVGRLYGLNFSTVRESVNESLLTCGRIPKSLELWHRRFGHLNARSLEK
FT                 LIRDEMVTGLKVDGAVKTKDMVVCEPCVVGKQTRKPFAVRDGKRSSRVLEL
FT                 VHSDVCGPVTPVGVLGVKYFVTFTDDWSHFAVVFLITSKDEVFECFQTYEA
FT                 LMSAKFERKIHRLRCDNGGEYKSKQFERFCKSKGIQVEWTVPHTPEQNGVS
FT                 ERLNRTLVEKARSMLEDSGADKRFWGQAIQTAAYLLNRSPSSAIAPNVTPY
FT                 ELWEGCKPDVSKLRTFGCGVYVHVPKEQRTKLDAKAWKGIFLGYANNGYRV
FT                 WNPKAGKIVHARDVDFLEASEAKLQVDRVLPNDVFSVPKRKEQNDDSDDEE
FT                 EASSVSDGESNEEFDSFRDDGSSDPGEGTVAVDGTGSSGEADRSSGETGRP
FT                 QRNRKVPPWHRDYEIDYAAYALNATSYVEDLPNSIADAKRRSDWNLWQAAI
FT                 IEEMDSLKKNGTWKLTKLPENRTPITNKWVFKVKRGVDGAPDRYKARLVAR
FT                 GLSQKYGIDYSETYSPVAKLDTLRTVLALANQEKLVVHQMDVKTAFLNGTL
FT                 EEEIYMVQPEGFEQGRELVCRLEKSIYGLKQASRAWNERFHNFVEERLKFK
FT                 RSENDQCLYTRRIGSEKLIIVLYVDDILIAGSLKAVKMVKDLLSREFEMTD
FT                 MGNIRSFLGMKIDYDLEKGVMWLIRLLEDLWWKPKEATTFYEDNQSAMRII
FT                 ENSKDFGRLKHVDVKFHFLRDLVKQKRIRLRFLTSSDQPADMMTKGLPVAA
FT                 FQRHRAAIGLSSCSG"
XX
SQ   Sequence 3592 BP; 973 A; 694 C; 1087 G; 838 T; 0 other;
     ggttttgggc ccagtaatcg cgtggcgcga gtgtaaccgt ttcgtaaaaa gttgttcgcg        60
     atggaggagg aaaaagccga gcgtgttttc ctgccgcttt tcgacggcac gaattttgca       120
     gcatggaagc tccgcatgct aatactcctg gaggagcatg agctcgtgga gtgtgtggaa       180
     acttatgctg ctgatgtgcc ggaactgcag gaagtggatg gcgatagtga agcagtgaag       240
     aagacaaaag aattggccag agagagaagg aagaaaatgg atcgcaagtg taaatcgttg       300
     ctagtgtcgc gtatacacga ttcgcagctg gaatatatcc aggacaaacc ggctccgaag       360
     gatatttgga atgcgttgcg ccgtgtgttt gagcggcgca gcatcgcgag caggatgcat       420
     ctaaagcgtc agatgctcac aatgcgtttc gagagtggtt cgcttcagca acattttctt       480
     cggttcgaca agctagtgcg cgaataccgg gcaactgatg cagtgctgga ggagatcgac       540
     gtgatctgcc acttgctcct cactcttggc agtgcgtatg ccacagtggt taccgcgatt       600
     gagacaatgc cggaagaaaa cttgtcgctt gagtttgtca agtgccggct acttgacgaa       660
     gaaacaaagc gtaaaggtgt cgaaatgtgt tcccccgccg cgagtggtga agctgctttt       720
     tccggctcga agaagccacc gaaaacgtac agaatgaagt gtttcgggtg taagcaggag       780
     ggacacaagt tgtcggaatg ccctatgaag aagaagaata gcaacaaaag tgaaaaatcg       840
     aaagcgcatc ttgccgagca gggtggtgtt tgttttgttg gctgcagcag gggttccgaa       900
     atacagtgtg ggtcgcgaaa agtgaactgg ttcatcgatt caggttgttc ggaccacctg       960
     gtgaacgata aatcgttgtt cgatgatttg aaggtgttgg acagtccgat tgaaatagcg      1020
     atcgcgaaaa atgaacagtg tattgtggcg aaacattccg gaacggtccg tgtgtactcc      1080
     gaagtcaacg ggaaacaaat cgaatgcaca gtgaaggacg ttttgtacgt gccagaatta      1140
     aggtgcaatt tgttttcggt gatgagagtg gacgatgcgg gaatgaaagt gatctacgag      1200
     aaaggcaaag tgcgaattat gcgtggatcg gaaatcgtcg ccactggtgc gcgtgtcgga      1260
     cgattgtacg gtttgaattt ctcaaccgtc agagaaagtg tgaacgaatc gttgcttacg      1320
     tgcggtcgaa ttccgaagag tttggaattg tggcatcgtc ggttcgggca tttgaatgca      1380
     agaagcctcg aaaaactgat acgcgatgaa atggttaccg gtttgaaagt ggacggcgcg      1440
     gttaagacta aggacatggt agtgtgcgag ccgtgcgtcg ttggaaagca aactcggaaa      1500
     cctttcgcgg tacgtgatgg aaagcgttcg tcgcgtgtgc ttgaactggt ccattcggat      1560
     gtgtgtggtc cggttacgcc ggttggagta ttgggagtga aatacttcgt aactttcacc      1620
     gatgactgga gtcattttgc cgtagtgttc ctgatcacat cgaaggatga agtgttcgag      1680
     tgtttccaga cgtacgaggc gttgatgtcg gcaaagtttg agcgtaagat tcaccgtctg      1740
     cgttgcgata atggtggtga gtacaaaagc aaacaatttg agcgtttttg taagtccaag      1800
     gggatccaag tggagtggac tgttcctcac acacctgaac agaacggagt gagcgagcgg      1860
     ctcaatcgaa ctctggtcga gaaggctcga tccatgctag aagattcagg agcagataag      1920
     cggttctggg gacaggcgat ccaaaccgct gcgtatttgc tgaatcgtag cccgtcgtcg      1980
     gctattgctc cgaacgtgac accgtatgag ctgtgggaag gttgcaagcc agatgtaagt      2040
     aaacttcgaa cgttcggctg tggtgtgtat gttcacgtcc cgaaggagca gcgaacgaag      2100
     ctggatgcaa aagcgtggaa ggggattttc ctgggatacg ctaacaatgg ttatcgcgtg      2160
     tggaacccca aagcaggaaa aatcgttcat gcccgagatg tagatttcct tgaagctagt      2220
     gaggcgaagt tacaggtcga cagagtattg ccgaatgatg tcttttctgt tcccaaaaga      2280
     aaagagcaaa acgacgatag tgatgatgag gaagaagcga gttccgtatc cgatggtgag      2340
     tcgaatgaag agttcgacag tttccgtgat gatggttcat cggatcctgg cgaaggaacg      2400
     gtggcggtcg atggcactgg atcaagcgga gaagcagatc ggagcagtgg tgaaacgggt      2460
     agaccacagc ggaatcggaa agttccgccc tggcacaggg actacgaaat cgactatgca      2520
     gcatacgcgc tgaatgcaac aagctacgtg gaagacctcc cgaattccat agcagatgcg      2580
     aagagacgaa gcgattggaa cttgtggcag gctgctataa tagaggaaat ggattccttg      2640
     aagaagaacg gaacatggaa attgacgaag cttccggaga accgtacacc gattaccaac      2700
     aagtgggttt tcaaggtgaa gcgtggcgtt gatggagcac cggaccggta caaggcacgg      2760
     ttggtggctc ggggattaag ccaaaagtac gggatagact acagcgaaac gtattctcca      2820
     gttgcgaagc tggatactct gcgcactgta ttggctctgg cgaaccagga aaagttggtc      2880
     gttcatcaaa tggacgttaa gacggccttc ttaaatggaa cattggagga agagatctat      2940
     atggtgcaac cggagggctt cgagcaagga agagaattgg tatgtcgtct ggagaaatcc      3000
     atctatgggc tgaagcaggc atcgcgcgcg tggaatgagc ggttccacaa cttcgtcgaa      3060
     gaaagactca agttcaaacg gagcgagaat gaccaatgcc tgtacactcg aaggattggt      3120
     tcggagaagt tgatcatcgt tttgtacgtt gacgacattc tcatagctgg ttcgttgaag      3180
     gcagtaaaga tggtgaagga tctcttgtct cgcgaatttg aaatgaccga tatgggtaac      3240
     atcagaagct ttttgggaat gaagattgac tacgatttgg aaaaaggagt aatgtggtta      3300
     attcgtttgc tagaagatct gtggtggaaa ccgaaagaag caacaacgtt ctacgaggac      3360
     aaccagtctg cgatgcggat tatcgagaat tcgaaagatt tcggacggct caagcacgtg      3420
     gacgtgaaat tccatttctt acgagatctg gtgaagcaaa agcgtattag acttcggttc      3480
     ctgacttcgt cggatcagcc agctgatatg atgaccaagg gtctaccggt ggcagctttc      3540
     caaagacatc gagctgctat tggtctatcg agttgcagcg gttgagcagg gg              3592
//
ID   Copia-132_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-132_AA_;
KW   Ty1_copia_Ele73; Copia-132_AA-I; Copia-132_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-230
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 230 BP; 50 A; 59 C; 40 G; 81 T; 0 other;
     tgttaacgaa caacctctgg cagcacggtt gtgtatccat gcaaccgccg ctactgtggt        60
     gtgcccctac cagttaggca acactgtggt agctgtcatt attttccctc cactttgtta       120
     ttcttaaatg tatcttcgat taatacaaac gtgtttttag tttctctcta aacaagagta       180
     gttcttttat tcacttccgg ttcctccgtg tcgttccgaa acccatttca                  230
//
ID   Copia-133_AA-I repbase;    DNA;    INV; 3861 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-133_AA_;
KW   Copia-133_AA-LTR; Ty1_copia_Ele8; Copia-133_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3861
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1263-1790] - Integrase core
CC   'CTTTT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..2210
FT                 /product="Copia-133_AA-I_1p"
FT                 /translation="MSKEVRHLPDCQHTWHRRFGHRDPAVLDRIQEEKLCE
FT                 GFSMHDCGIRHVCEHCLAGKLSRIPFPKQAQNRAARILDVVHTDVCGPMKN
FT                 VTPGGCRYLMTLIDGYSRYTVVCLLRQKSDAAGCIKRYVAHVKTRFGRAPG
FT                 AIRSDGGGEYANKELKEFYEREGIQAQFTTAYSPQQNGVAERKNRSLQEMA
FT                 TCMLLDAGLPKKYWGEAIMTAGYLQNRLPSRSVDSTPFEKWFGRKPSLKNL
FT                 RVFGSPAYVHVPDVKRSKFDHKARKLLFVGYCDDRKAFRFLNPENDEITIS
FT                 RDARFIELGDGSLDQRDPVSDGSEQFVELDVTAVKSQQRRKIRPNWSHRKM
FT                 KQHFRRSRVRTITIRMRKKVQSAENAGAEAKH"
FT   CDS           2334..3851
FT                 /product="Copia-133_AA-I_2p"
FT                 /translation="MAEEYDALMRNDTWSLVQLPAGRVPIGCKWIYKKKED
FT                 SSGNVSRFKARLVAQGFSQRYGVVYDAVFAPVASQATLRILLTVAGYKKMA
FT                 VRHLDVKSAYLHGKLQDEIYMQQPKGFVVPGKEKLVCRLKRSLCGLKRAAR
FT                 IWNTTISELLKGLGFDQSRSDPCLFIKRSPGGGFVYLMLHVDDMIVAGMTE
FT                 KEIDAVEFELRKKITLSSLGEIGHFLGIRITKDKNGFYCLDQENYIKKVAS
FT                 RFGLEHAKGSSVPIDVGYFRSREGSKELPDNERYRSLAGALLYVAVNTRPD
FT                 VAASVSLLCRRISQPTEVDWNELKRVVKYLMKTSNSKLRLCAERGKPLRLS
FT                 GYCDADWGGDTADRKSNTGYLFLLGEASVSWASRKQSSVSLSSMEAEYIAV
FT                 SEACKELVWLRRMLDEMGAEQCGPTVLFEDNRSCMEFVEMERVSRRSKHID
FT                 TRMFYTKDMCEKGLVELRFCPSENMTADLLTKPLGPVKQKKFAEAMGLTEV
FT                 ESWAGRREKY"
XX
SQ   Sequence 3861 BP; 965 A; 826 C; 1215 G; 851 T; 4 other;
     ggttatgggc tccaggcckt gcgggaactg gaacagaaag tgtttttttt tktgcgaaag        60
     tgaatcgttt cggcgattga ggttatgtcg cttggcgaat aaccaccagt gattcgactg       120
     tgtgcgttgt ttcatcgatg cgagtgcgaa caagtcgaga caagtttgcg tgcgactctc       180
     tcggtgcggg tgcgcgaaag tgaaaacaaa ctttgcgagt gttttgctcg atcgcgggcg       240
     tgcgaacagt gaaccgaaaa tgagcgagaa atatttgttc tcccggttga gtgaccagaa       300
     ctatcccgtc tggaagaagc gcatggagat gcttcttaag cgcgaagatt tgtggtcggt       360
     agtgtcggag gcgaagccgg aaccggcaac cgatgtgtgg tcgaaacgtg atcagaaagc       420
     gctagctact atcgttctgt acgttgaaga cagtcagctg aatttagtgc gggatgcggt       480
     tacagcggct gatgtgtgga aagtgctccg ggatttccac gaaaaagcga caatgacgtc       540
     gcgggtggca ttgctccggc ggatttgcag tctcaacatg gctgaaggag gagacatcga       600
     gaaacatctc tacgatctcg aagagctttt tgaccgacta gccactgctg gtcaagctct       660
     ggaaacacca ctcaagattg cgatgattta tcgcagtctc cctgaatcgt atggaggtct       720
     gataacagca ttggaaagca gacccgatgc agatcagacg ctccagctgg tgaagcaaaa       780
     attactcgac gagcaccagc ggcgtgtgga gcgatcaggg gaagtttcgg agaaagccat       840
     gaagagtcgg agtaaggaaa aggagaagat ctgctaccat tgtcggaagc cagggcactt       900
     ccggcgcgat tgccgtctgt tgaaatcgca gcagaagagt gataccgaac ataaagtgaa       960
     gccttccgga agcaaggcga agaaagcggt cacagtgcag tgttgtgaat gaagagggat      1020
     aagtggtcgc tacggctgag ctgtgtggca atttgtacat cctgaagacg gcagcggatg      1080
     cgcggatgag caaggaggtt cggcatctgc cggattgcca gcatacgtgg catcgccggt      1140
     ttggccaccg ggatccggcg gttttggatc gcattcagga ggagaaactc tgcgagggtt      1200
     tcagtatgca cgattgcggg atcaggcatg tatgcgagca ttgcctagca ggtaaattat      1260
     ctagaattcc ttttcctaag caagcacaga accgtgctgc tcgtatattg gacgtagttc      1320
     atacggacgt atgcggtcca atgaagaacg tcacgccggg agggtgcagg tacctgatga      1380
     ccctcattga cggctacagt cgctacactg tggtctgcct gctcaggcag aaatcggacg      1440
     ctgcgggctg tatcaagcgt tatgtggccc acgtgaaaac gcgattcggt cgagcgcccg      1500
     gtgctatacg ttctgatggt gggggcgaat acgctaataa ggagttgaag gagttctatg      1560
     agcgagaggg catccaggcc caatttacga ccgcgtattc cccacaacaa aatggcgtgg      1620
     cggaacgtaa aaaccgatcc ctccaggaga tggcaacgtg catgttgttg gacgcaggac      1680
     ttcccaagaa gtactggggc gaggcgatta tgaccgcggg gtacctccag aaccggttgc      1740
     cgtcgcgatc tgtcgattcg acaccgtttg agaaatggtt cggcagaaag ccttcgttga      1800
     agaatctgcg tgtattcgga agtccggcgt acgtccacgt ccccgacgtg aagcgaagca      1860
     agttcgacca taaggctcga aagttgttgt tcgttggcta ttgcgatgat aggaaggcgt      1920
     ttcgtttcct gaacccggaa aatgatgaaa tcacgatcag ccgggatgct agattcatcg      1980
     agttgggaga tggttcgctg gaccagcgtg atccagtatc cgacggtagc gaacagtttg      2040
     tggagctcga tgtgacagcg gtgaagagcc aacagcggag gaagattcgg ccgaactgga      2100
     gtcacaggaa gatgaagcaa cacttcagga ggagtcgtgt tcggactatt acgatccgga      2160
     tgaggaagaa ggtgcagtcg gcggagaacg ccggtgccga agcgaagcac scgcggagtg      2220
     cttccgaagc gattcgaaga ttacgaagtg gatgcagcca tagcagttga aggagaaccg      2280
     gatacctacg aagaggcagt gaacagttcc gaacggattt gtggaaggcc gcaatggctg      2340
     aagaatacga tgcgttgatg cggaatgaca cctggtcgct ggttcagctg ccggccggcc      2400
     gtgttcccat cggctgtaag tggatatata agaagaagga agacagttcc ggcaatgtat      2460
     cgcgattcaa agctcgcctt gtagcccagg gcttttcgca gcgttatggg gtcgtttacg      2520
     acgctgtatt cgccccggtt gccagccagg cgacgttgcg gattctcttg acagtggctg      2580
     ggtacaagaa gatggcggta cgtcacttag acgtgaagtc agcatacctt cacggaaagc      2640
     tgcaggacga aatttatatg cagcagccga aggggtttgt ggtgcctgga aaagagaagc      2700
     tcgtatgtcg gttgaagcgg agcctatgcg gcttgaagcg ggctgcaagg atttggaaca      2760
     ccacgattag cgagttgctg aaaggattgg gcttcgatca gtcccgatca gatccttgtt      2820
     tgttcatcaa acgttcgcca ggaggaggtt tcgtctacct gatgttgcat gtcgatgata      2880
     tgattgtcgc cggcatgacc gagaaggaga ttgatgctgt cgagtttgag ctgcggaaga      2940
     agattacctt gtcgtcgttg ggagagattg gccattttct gggcatccgg attacgaagg      3000
     acaagaacgg attctactgt ctggatcagg agaattacat caagaaggtg gcgtcgcgat      3060
     tcggactcga acacgccaaa ggttcgagcg tgccgatcga cgttggttac ttcagaagtc      3120
     gtgagggaag taaggagctg ccagacaatg aamgatatcg tagcctcgcc ggtgcgctac      3180
     tctacgtcgc tgtcaataca cgtcccgacg tagcagcaag tgtgtcgcta ttgtgcagga      3240
     ggatcagcca gccgacagag gtagattgga acgagctgaa gcgtgtggtg aaatatctca      3300
     tgaagaccag caatagcaag ctgcgactgt gtgcagaacg tggcaaaccg ctgcgtttga      3360
     gtggatactg tgatgctgac tggggcggag acacggcgga tcgcaagtcc aacacgggat      3420
     acctgttctt acttggtgaa gcgtctgtta gttgggcgag tcggaagcag tctagcgttt      3480
     cgctctccag tatggaagcg gagtatatcg cagtgtcaga agcgtgcaaa gaacttgtgt      3540
     ggctacgccg tatgttggat gagatgggag ctgagcaatg cggccccacc gtgctgtttg      3600
     aagataaccg aagctgtatg gagtttgtcg agatggagcg cgtctcgcgc aggtcgaaac      3660
     acatagacac tcgtatgttc tacacgaagg acatgtgtga gaaaggtttg gtggaactac      3720
     gattctgccc ttcggagaac atgacggccg atcttctcac gaagccgttg ggtcccgtga      3780
     agcagaagaa gtttgcagaa gccatggggt tgacggaagt tgagagttgg gccggaagaa      3840
     gagaaaaata ttgaggagga g                                                3861
//
ID   Copia-133_AA-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-133_AA_;
KW   Copia-133_AA-I; Copia-133_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-266
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 266 BP; 58 A; 67 C; 61 G; 80 T; 0 other;
     tgttagcagt gtataagtgg gggcaatatt tttacccggc gccactacac tgcaatcatt        60
     actgcagtag agaaaaagtg caatcaaaac tcctgtgaat tttcattccc gtgtaacagt       120
     ccgatcatta aacacgttct agagtagtcg gtacgagttg cgttttattt cctcgttatc       180
     gcgagttccc cgggttaatt ccgtccgctt tcggtgttgg cctgtccact tcgctacctg       240
     ctgggtgtcc gccggtgaat cccaca                                            266
//
ID   Copia-134_AA-I repbase;    DNA;    INV; 4289 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-134_AA_;
KW   Copia-134_AA-LTR; Ty1_copia_Ele217; Copia-134_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4289
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1455-1991] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..3092
FT                 /product="Copia-134_AA-I_2p"
FT                 /translation="MANPNAGSSASGDGVLVRQQQQSFNTQGHPHIERLVG
FT                 RENWRTWKFAVKTYLEVEDLWEAVEPTPNEDGTLPAVDPRKDRIARGKIIL
FT                 FLDPVNFIHVEEVKTAAEVWRKLSNTFEDTGLTRQWCLLHKLITTNLVSCG
FT                 SMEAYVNRMISTAHQLIGIGFPLDDRWIGMLLLAGLPPEYRPMVMGLENSG
FT                 IQITGDIIKTKLLQETVLAEPTTEPAFVSRHDSKSKHGKVTKATTTQGKGP
FT                 QCRRCEKFGHIARYCNAKEPAQRNKSDKKGDAFCTVLSVREAGEDDEWYFD
FT                 SGSVKHLTKNEMLLEHMRPADGSIYAANKGIMKIVAEGSAKLRPTCNPDTI
FT                 DVTNVELIPELAVNLLSVGKIVDQGHSVTFTKTGCKVINPTGKIIATGQRS
FT                 NGLFKLEQKPSKALACPSPETADLWHKRMGHLASRNLVRLRNGMVDGVRFH
FT                 GNDLGNCKTCAMGKQTRLPFDHEGSRASEVLELVHSDIAGPMEENSLGGSR
FT                 YYLSFIDDKTRKVFVYFLRTKSKEEVLQKFKDFHSMAERQTGKKLKVLRTD
FT                 NGWEYKNWNFENYLKQLGVRHQTTVEYTPEQNGLAERVNRTVVERARCMLY
FT                 EAKLAKPFWAEAVAAAVYLINRSPTKGTETTPEEAWTGREPNLSHIRTFGT
FT                 TVMSHVPKQKRKKWDQKADECILTGYDDETKAYRLYNLKSKQIFKSRDVTF
FT                 IDEGIIKRDNTPAGTTDDQRRSYVRLEFSENVLDEPLPTPADQIDAAQAND
FT                 VNSSDESFQDADDTEADSALPPHQSSSTPVALRRSGRERFLSGKYKDFYIV
FT                 NKGLPSTKFTDSKDDCPMPSTSVAEDSVALPSCSNQRLASVVTQQRLMLCD
FT                 RGRLPQGKYLNDSDNECSDTGADFSETFLDDPVTHNEALSRDDADHWKQAM
FT                 IDEYDALISNETWTLTDLPEGRKAIKCKWVYRTKLDVNGNVDRYKARLVIK
FT                 GYSQRKGVDYEDTYSPVVRYSSLRYLFALAARWGCKWTKWMPLQHSCRAI"
FT   CDS           3038..4279
FT                 /product="Copia-134_AA-I_1p"
FT                 /translation="MGLQVDQMDAVTAFLQGDLAEEIYMEQPPCFVDGGKK
FT                 SKVCRLNKALYGLKQSSRVWNSKLDAALRKFGLESTVYDPCVYYRISGGKV
FT                 LFVAVYVDDVLIFSNCKRWKNEIKGKLNQEFKMNDIGPAKYALGIRITRTK
FT                 EAVSLDQEAYIDAMLDRFQMAKCNPVTTPMNTSEKLTKEMCPSTAEEEERM
FT                 RDVPYREAVGCLMYLAQSTRPDICYAVNVLSRFNTNPGEQHWNAVKHLLRY
FT                 VRGTSKFRLIYHRSKDSTIDGFSDADWASDHDDRKSTTGYVFTAQGGAISW
FT                 CCKRQQTVALSTCEAEYMALSAAVQEALWWKRLRGLFEKEEAIVIHCDNQS
FT                 AISVAKNGGYQPRTKHIDIRHHFIRDAWEKGEVKVAYIGTDKQIADGLTKP
FT                 LPAVKMKICREVMGLQNPMG"
XX
SQ   Sequence 4289 BP; 1216 A; 1008 C; 1176 G; 888 T; 1 other;
     ataggttatg ggccgtcgac acgtgtctag cggaagcgga agaaaattca agacttgaag        60
     cttttttcac ttcaagaatg gcgaatccaa atgcaggaag cagcgcatcc ggcgatggcg       120
     ttttggtacg acagcagcag cagagtttca acacacaggg ccacccccac atcgagcggc       180
     tggtcggtcg agaaaactgg aggacctgga agttcgcagt caagacctat ctggaagtgg       240
     aagatctctg ggaagcagtg gaaccaacgc ccaatgaaga cggaacgctc cccgctgtgg       300
     accctcggaa ggacagaatc gcacgaggta aaatwattct gttcctcgac ccggtgaatt       360
     tcattcacgt cgaggaggta aaaactgcgg ccgaagtgtg gaggaagctt tcgaacacat       420
     tcgaggacac tggattgacc cgccagtggt gccttctcca caagctaatc acgacgaatt       480
     tggtcagttg tggatcgatg gaggcctacg tgaaccgtat gatttcgaca gcgcatcagc       540
     tcatcggaat tggctttccc ttggacgaca gatggatcgg catgttactg ttggctggcc       600
     taccgccgga atatcgcccc atggtgatgg gactggaaaa ttctggaata cagataacag       660
     gtgacatcat caaaaccaag ttgctacagg agaccgtttt ggcagagcct actacggagc       720
     ctgcattcgt ttcgcgacac gattcaaaaa gcaagcatgg taaggtaacc aaggcaacga       780
     ccacgcaagg taagggaccg caatgccgtc ggtgtgaaaa atttgggcat attgcaaggt       840
     attgcaatgc caaggaaccg gctcagcgca acaaatcgga caagaaagga gatgcttttt       900
     gcacggtgct atctgtgcga gaagctggag aggacgatga gtggtatttc gactctggct       960
     cggtgaagca cctcacgaag aatgaaatgc tactggagca catgcggccg gcggacggta      1020
     gcatctacgc ggcaaataag ggaatcatga agattgtcgc ggaaggatcc gcaaaactgc      1080
     gacccacgtg caaccctgat acgattgatg tgacaaacgt cgagctgatt ccggagctgg      1140
     cagtaaacct actgtcggta ggtaagatag tcgatcaggg tcattcggtt actttcacca      1200
     aaacaggctg caaggtcatc aatccgactg gcaaaatcat cgctactggg cagcgatcga      1260
     atggactgtt caagttggag caaaaaccat ccaaggcgct ggcgtgccca tccccggaaa      1320
     cggcagatct gtggcacaag cgcatgggac atctggcatc gcgaaatctg gtaaggttgc      1380
     gaaacggcat ggttgacgga gtgagattcc atggtaacga cctcggaaat tgcaaaacgt      1440
     gtgcaatggg gaagcaaacc cggcttccat tcgatcacga gggatcacgt gcgagcgaag      1500
     ttctggagct tgttcattcg gacatagccg gtccgatgga agagaactcg ctgggaggca      1560
     gtcgttatta tctgtcgttc atcgatgaca aaactagaaa agttttcgtc tactttttgc      1620
     gcaccaagtc aaaagaagag gtgctgcaaa agtttaagga cttccacagt atggctgagc      1680
     gccaaactgg aaagaagctg aaagtgctga ggacggataa cggctgggag tacaaaaact      1740
     ggaatttcga gaactatctc aagcaattgg gtgtccgtca tcaaaccacg gtggagtaca      1800
     caccggaaca gaatggactc gctgaacgag tcaaccgaac ggtggtggaa cgcgcgaggt      1860
     gcatgttgta tgaagccaaa ctagccaaac cgttctgggc agaggctgtg gccgcagcag      1920
     tctatctgat caaccgatca ccaacgaagg gtaccgaaac aacaccggaa gaagcatgga      1980
     caggtcgcga accaaatctg tcgcatatcc gaacgtttgg aactaccgtg atgtcccacg      2040
     tgccgaagca aaaacggaag aagtgggacc agaaggctga cgagtgcatc cttaccggct      2100
     acgatgacga gacgaaggca taccgcctgt acaacttgaa atccaagcag attttcaaga      2160
     gccgggacgt aactttcatc gacgaaggaa tcatcaagcg agacaacaca ccagctggaa      2220
     caaccgacga ccagaggcgc agctatgtca ggttggaatt cagcgagaac gtgttggacg      2280
     agcccctgcc gacgccggct gaccaaattg atgcagctca agcaaatgat gtgaattcaa      2340
     gcgatgaatc atttcaagat gctgacgaca cggaggccga ctctgcgctc ccgccgcatc      2400
     aatcttctag cacgcctgtg gcgttgaggc gcagcggtcg ggagcgcttt ctctcaggca      2460
     agtataaaga tttttatatc gtgaacaaag gcttgccgtc tacaaaattt acagactcca      2520
     aagatgattg cccgatgccg tccacatccg tggctgagga ttccgttgcg ctcccgtcgt      2580
     gctcaaatca aagacttgct agcgttgtaa cgcaacagcg gttgatgctc tgcgataggg      2640
     ggcgcctgcc ccaaggcaag tatttgaacg atagtgacaa cgaatgttcc gatactggtg      2700
     ccgatttttc agaaacgttc ttggatgatc cagtgacgca taacgaagcg cttagccgag      2760
     acgatgctga ccactggaaa caggccatga tcgatgaata cgatgcttta atctccaacg      2820
     agacgtggac gctgaccgat ttgccggaag gacgcaaggc gatcaagtgc aaatgggtgt      2880
     accgaaccaa gctcgacgtg aacggaaacg tcgacaggta caaagccagg ctggtcatca      2940
     aaggatactc gcagcgaaag ggggtggatt acgaggacac ctactccccg gtcgtccgat      3000
     atagttcgct gcgatacctt ttcgctctgg ctgcaagatg gggttgcaag tggaccaaat      3060
     ggatgccgtt acagcattcc tgcagggcga tttagcggag gaaatttata tggagcaacc      3120
     cccttgcttc gtggatggtg gcaagaaatc caaagtttgc cgcctcaaca aagccctcta      3180
     cgggttgaag caatccagcc gcgtctggaa ttcgaaattg gatgcagcgc ttcgaaaatt      3240
     tggactggaa tctactgtgt acgatccatg cgtatactat cgtatcagcg gtggcaaggt      3300
     gctattcgtt gctgtatacg tcgatgatgt cctcattttc agcaactgca aacgctggaa      3360
     aaatgaaata aaaggtaaat taaatcagga atttaaaatg aacgatattg gaccagcaaa      3420
     atacgccctg ggtatcagga ttaccagaac caaagaagcg gtttctctgg accaggaagc      3480
     gtatattgat gccatgcttg accgttttca aatggccaag tgcaaccctg ttactacccc      3540
     gatgaatacg agcgagaagc tgacgaagga aatgtgtccg tcaacagctg aagaagagga      3600
     gcgtatgaga gacgtgccat acagagaagc tgtgggctgt ttaatgtacc tcgcccaaag      3660
     tactcgtccg gacatctgct acgccgtgaa cgtgctcagc cggttcaaca ccaaccctgg      3720
     cgaacagcac tggaacgcgg tgaaacatct cttaaggtac gtgagaggaa cttccaaatt      3780
     tcgcttgatc tatcatcgca gtaaagattc tactatcgat ggattctccg atgctgactg      3840
     ggcatcagac catgatgaca ggaagtccac gacagggtat gtatttaccg ctcaaggagg      3900
     agccatatcg tggtgctgca agcggcaaca aacagtagct ctatccacat gcgaagccga      3960
     atacatggcg ttatcggctg cggtacagga agctttatgg tggaagcgat tacgaggcct      4020
     gttcgaaaag gaggaagcaa tcgttattca ttgcgacaac caaagtgcca tttccgtcgc      4080
     aaagaatggt ggttatcaac cgaggactaa acacatcgac attcgccacc acttcattcg      4140
     tgatgcgtgg gagaaaggcg aagtcaaagt ggcgtacatc ggcactgaca aacagatcgc      4200
     ggacggcttg actaaaccac tacctgccgt gaagatgaag atttgccgtg aagtaatggg      4260
     actgcaaaat ccaatgggtt gaggaggag                                        4289
//
ID   Copia-134_AA-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-134_AA_;
KW   Ty1_copia_Ele217; Copia-134_AA-I; Copia-134_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 129 BP; 40 A; 28 C; 22 G; 39 T; 0 other;
     tgttagcgaa tgcaaatttg caatcgaagc aacccatgac tttagtgtta agattgattt        60
     cgaataaaaa ctatataagt tgttagaccg tcacctagac cacacgcgtc ttttattagc       120
     tctgcccca                                                               129
//
ID   Copia-135_AA-I repbase;    DNA;    INV; 4044 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-135_AA_;
KW   Copia-135_AA-LTR; Ty1_copia_Ele191; Copia-135_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4044
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1403-1930] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..4042
FT                 /product="Copia-135_AA-I_1p"
FT                 /translation="MDGGKFSVEKLRSGGYETWRFKVEMLLVRENLWKYVS
FT                 EAAPNPLTDAWKEGDAKARATIALLVDDCQHPLIRDSKTAQSTWDNIENHH
FT                 QKTTMTTKVSLLKKLCRAEYNENGDMEGHLFKMEELFSSLANAGQELDANL
FT                 KVAMVLKSMPDSFDNLTTALETREDEDLTMDLVKGKLLDEAQKRMEKTHPS
FT                 ESILRVGAEKKIICHQCRKPGHMKRDCPMMKNEGSSTSGGRSGGQNGQPKH
FT                 KPKGKAAKTTPFAFTVSKNRKLMKTWIVDSGATAHMCCDRSFFQALKPSSG
FT                 VTITLADGNETAVQGIGSGRLFCYDDSGNQQEVILSDVFYVPDLESNLVSV
FT                 GCLVNKGAEVTFGKSRGCVIQCGGVVAAVAQKVGGLYQLNTGAERSMNVVH
FT                 HTKDCIHSWHRKLGHRDPEAIQRVVREGLAKGVSIKKCDIYQTCECCAEGK
FT                 IARKPFPRKTERQSTKVLDLIHTDICGPMNTVTPGGSRYFLTMIDDHSRYT
FT                 VVYFLKRKSDAADVIEEYVTMVRNRFGRNPVAVRSDQGGEYKAKRLGQFYR
FT                 ANGIVPQYTAGYSPQQNGVAERKNRTLVEMARCMLLDAKLGHRYWAEAINA
FT                 AVYLQNILPSRSVEKTSFELWYGKQPDYSNLHIFGSAAIVHVPAEKRKKLD
FT                 PKGKKLTFVGYADNHKAFRFIDVSTDKVTISRDAQFIEMEEPKTQNSFDHP
FT                 GSLQVVEYEPEVIPFYPGPEEEDDDNVDEDYEEDDNAGEDAEEGSNADEDD
FT                 EINNVDETLVEEEHAATDSSMYETPNEDDGSETDTPVRRSSRSTKGVLPQR
FT                 YRETTGMVRKLTDEPRTYKEAMRGPEAELWKAAMDDEMKSLQENGTWQLTG
FT                 LPPGRKAIGSKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPV
FT                 VRQVTFRVLLTVASQRGMLVKHADVKTAYLNGELKESIFMRQPPGYETEDR
FT                 NAVCSLQRSLYGLKQAGHVWNKKFDQVLKQMRFQQSKNDPCLYVRRNGAHY
FT                 TYLVIYVDDMVIACNDEEEYEEIIKTLNRNFKVTSLGDISHFLGIKIKRNE
FT                 KGFSLNQQTYIQQVLERFGMDQAKPSKYPLNPGHIQQKEEQEKLANNHQYA
FT                 SLIGSLLYVAVNTRPDIAVSVSILGRSVSAPTHADWNEAKRILRYLKLTMD
FT                 HELVLGEDESDLEIYVDADWANDAKSRKSNSGYLFLFGGGPIRWGSRKQTC
FT                 VALSSTEAEFVALAESCQELQWIDRLLTDFSVKTIKPILIHEDNQSCIKQM
FT                 ESGRATNRSKHVDTKYHFVYQLMADGVIRMQYCSTEHMIADMLTKPLTNVK
FT                 LTRFREAAGVYPSRR"
XX
SQ   Sequence 4044 BP; 1157 A; 917 C; 1131 G; 839 T; 0 other;
     taggttattg gcccagaata ttttactgcg agtagttcag aagttcattt tcaagattac        60
     gatggacggt ggaaagttta gcgttgaaaa gctacgaagc ggcggatatg agacttggcg       120
     gttcaaagtt gagatgctgt tagtccggga gaatttgtgg aagtacgttt cggaggccgc       180
     ccccaaccct ctgacggacg cctggaagga aggcgatgcg aaagcccggg ctacgattgc       240
     tcttctggtg gacgactgcc aacatccgtt gattcgcgat agcaagacgg cgcaatctac       300
     gtgggacaac atcgagaatc accatcaaaa gacgaccatg acgacgaagg tatcgctttt       360
     gaagaagctg tgccgggcgg aatacaatga aaacggcgac atggaaggac acttgttcaa       420
     gatggaagaa cttttctcaa gtctggcgaa cgcgggtcag gaactggatg cgaacctgaa       480
     agtggcaatg gttctgaaga gcatgccaga ttccttcgac aacctgacaa cggctttgga       540
     gacccgtgaa gacgaggacc tcactatgga tttggtaaaa ggcaaattac tggatgaagc       600
     gcagaagaga atggagaaga cccatccaag cgaatccatc ctacgtgtcg gtgccgagaa       660
     gaagatcatt tgccatcaat gtcgcaagcc aggccacatg aagcgtgact gtccgatgat       720
     gaagaacgaa ggttcatcca catccggtgg acgaagcggc ggtcaaaacg gtcaaccgaa       780
     gcacaagccc aaggggaaag cagcgaagac cacacctttt gcattcacgg tgtccaagaa       840
     ccggaagctg atgaagacgt ggatcgttga ttccggggca accgcccata tgtgttgcga       900
     ccggtcattt tttcaagcgt tgaaacctag ttcgggagtg accattactc tagctgatgg       960
     taacgagacg gctgtccagg gaattggttc cggccgtttg ttctgctatg acgatagcgg      1020
     aaatcagcaa gaagtcatcc tcagtgacgt gttctacgtg cctgatctgg aatccaactt      1080
     ggtttccgtc ggatgtctgg tcaacaaggg agctgaggtc acatttggaa aatcccgagg      1140
     ctgtgtgatt caatgcggag gcgttgtcgc agctgttgcg cagaaggtag gtggcctata      1200
     ccaactcaac acaggtgccg agcgaagcat gaacgttgtg caccacacga aggactgcat      1260
     tcattcttgg caccgcaagc tgggacatcg agatccagaa gcgatccagc gagttgtgcg      1320
     cgaaggctta gcgaagggcg tgtcgatcaa gaaatgtgac atttaccaga cctgcgagtg      1380
     ttgtgctgaa ggcaagattg cacggaagcc attcccgagg aagacggagc gacaatcgac      1440
     aaaagttttg gacctgattc atacggacat ctgcggtccg atgaatactg tgacgcctgg      1500
     cggatcaaga tatttcctta caatgatcga cgaccacagt cgctacactg tggtgtattt      1560
     cttgaagcga aaatcggatg ccgcggacgt gatcgaggag tacgttacca tggttcgcaa      1620
     ccggtttgga cgaaatccgg tagcagtccg ctctgaccag ggcggtgagt acaaggcgaa      1680
     gcgcttggga caattctatc gagccaacgg aatcgttccg cagtatacgg caggttactc      1740
     cccgcaacaa aatggagttg cggaacgcaa aaatcggacg ctagtggaaa tggcccgctg      1800
     catgttactg gatgcaaagc ttggccaccg ttactgggct gaagccatca atgcagcagt      1860
     gtatctccag aacatccttc cgtcaagatc cgttgagaag acttcttttg aactgtggta      1920
     cgggaagcaa ccggactaca gcaatctgca catttttgga agtgcggcta tcgtgcacgt      1980
     accggccgag aaacggaaga agctagatcc aaaggggaag aagctaacat tcgtcgggta      2040
     tgccgataat cataaagcgt tccggttcat cgatgtgtcc accgacaagg ttaccatcag      2100
     tcgtgatgcg cagttcatag agatggagga gccgaagaca cagaattctt tcgatcatcc      2160
     gggatcactg caagttgtgg agtatgaacc cgaagtcatt ccgttctatc ctggtccaga      2220
     agaagaagat gatgacaacg tggatgaaga ttacgaagaa gatgataacg ccggcgaaga      2280
     tgctgaagaa ggtagcaacg ccgacgaaga tgatgaaatt aacaacgtcg atgaaactct      2340
     ggttgaggag gagcatgcag ctacggattc cagtatgtac gaaaccccaa acgaagacga      2400
     cggcagcgaa accgatacgc ctgtgagacg atcttcccgc agcacaaagg gtgtgttgcc      2460
     gcaacggtac agagaaacaa ctggaatggt gagaaaactg actgacgaac caaggacgta      2520
     caaggaagcc atgagaggac ctgaagctga actatggaag gccgctatgg acgacgagat      2580
     gaagtcactg caagaaaacg gtacgtggca actgactggt ttaccaccgg gccgcaaagc      2640
     gataggcagt aagtggatct tcaagcggaa actagatgaa gatggcaacg tggtgagata      2700
     caaggcccgt ctagttgcgc aaggcttcac ccaaaagttt gggacagact atgatgaggt      2760
     ctttgcgcca gtggttcgtc aagttacgtt tcgagtgctg ctaacggttg ccagccaacg      2820
     aggaatgctg gtgaaacatg ctgatgtgaa gaccgcctac ctcaacggag aactgaagga      2880
     atcaattttc atgcgacagc cccccggata cgaaactgaa gataggaatg cggtgtgctc      2940
     gttacaaaga tccttgtacg gactgaagca agcgggccat gtttggaaca agaagtttga      3000
     tcaagtcttg aagcagatga ggttccagca gtcgaagaac gacccgtgcc tgtacgtgcg      3060
     gcgcaacgga gcacactaca cgtatctggt aatttatgtg gacgacatgg tgattgcctg      3120
     caacgatgaa gaggagtatg aagagatcat caaaacccta aaccggaatt tcaaggtaac      3180
     atcgttgggc gatatcagtc actttcttgg aatcaagatc aaacgcaacg agaaaggatt      3240
     ttccttgaac cagcagacgt acattcaaca agtcttggag cgattcggca tggatcaagc      3300
     gaagccgtcc aagtatcctc ttaatcctgg ccacattcag caaaaggagg agcaagagaa      3360
     gctggccaac aaccatcaat atgccagtct cattggaagt ttgctgtacg tggcggtgaa      3420
     tactaggccg gatattgcgg taagcgtttc aattctagga agatcggtaa gcgcaccaac      3480
     acatgccgat tggaacgaag ctaagcgaat acttcgctac ctcaagctaa ccatggacca      3540
     cgaacttgtg ctgggagaag acgaatccga cctggaaata tacgtagatg cggactgggc      3600
     gaatgacgcg aagagtcgca aatccaactc tgggtacctt ttcctgttcg gcggtggtcc      3660
     aatacgctgg gggtcccgca agcaaacatg cgtcgccctc agtagcacgg aagctgaatt      3720
     tgtagcactg gcggagagct gtcaagagct acaatggatc gaccgattgc taacggattt      3780
     ttcggtgaaa actatcaagc cgatcctgat tcatgaggac aatcaatcct gcattaagca      3840
     aatggagtcc ggacgtgcca ccaaccgttc gaaacacgtg gatacgaaat accatttcgt      3900
     ttaccaactg atggcggatg gcgtgatccg gatgcagtat tgctcaaccg agcacatgat      3960
     agccgacatg ttaacaaagc ccctgaccaa cgtgaagctg accagattca gagaagcagc      4020
     tggagtttat ccgtcgagga ggag                                             4044
//
ID   Copia-135_AA-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-135_AA_;
KW   Ty1_copia_Ele191; Copia-135_AA-I; Copia-135_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-151
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 151 BP; 43 A; 29 C; 32 G; 47 T; 0 other;
     tgttggaagc gaagcgacta tgaaactcca gtaggctatg gctagctgac gtataattgt        60
     aaacgagtag aaaaataaat ttgttcattc tgttcttgcc cactgaagta gaaggttgtt       120
     tttattctta cgactacggc ccactttccc a                                      151
//
ID   Copia-136_AA-I repbase;    DNA;    INV; 3984 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-136_AA_;
KW   Copia-136_AA-LTR; Ty1_copia_Ele126; Copia-136_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3984
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1415-1942] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..2332
FT                 /product="Copia-136_AA-I_2p"
FT                 /translation="MEGSKISIVKLNNSNYAVWKFKAEMLLTREDTWKYIE
FT                 DQAPEPMTDEWKGGDRKARATIALLVEDQQHALIRDTKTAKEAWENLQKHH
FT                 QKTSLCSKVAVLKRICNKTYKDGDDMQNHLFELEELFGKLSCAGLDLGEPL
FT                 MVALVLRSLPDSFDTLATALESRSDDDLKLELVKSKLLDEVAKRDHGSADS
FT                 AMKASFLKKKKPLVCHFCKKTGHKQKECKLYAKEAESEKGRSPKARTARSE
FT                 DAVTFALMAGVQANSGEWIVDSGASRHMCGERGFFEDLEESAVKSVSLADG
FT                 KNAKVEGVGSGRLLCYHDNGKTTTVTLGNVLFVPSLEINLLSVPKLVEKGA
FT                 AVTFDEVGCRILVGGQLAAAAIKTGGLYKVRTSKEVLMAAKDHHNVDCQHV
FT                 WHRRFGHRDPNALGEMVQKDLVNGLKVYDCGVREGCDCCQKAKMSRKPFPK
FT                 SVERKSTAVLDLVHTDVCGPVENVSVSGCRYFMTIIDDYSRFCVLYLLRKK
FT                 EDVPEKIMEYVAMMKTQFGRPPKIVRSDQGGEYTGSALRAFYKREGIRAQF
FT                 TASYSPQQNGVAERKNRYLVEMSRCMLFDANLPECYWAEAVSTAVYLQNIL
FT                 PSKSIPTTPFELWHGRKPDVTHLKVFGSAAHVHVPKQKRKKLSPTSTKLTF
FT                 VGYSPDHKAYRFLDRSTRRVIISRDANFVEEERLAQAENVNRHHEAENVVD
FT                 FELGIKPTAIEVTPAVNSEPLDASDMDEIFWTMKIAIMTLLMNQR"
FT   CDS           2419..3984
FT                 /product="Copia-136_AA-I_1p"
FT                 /translation="MVLDSIAEPRSYEEALASPESEYWKTAMDEEFRSLTE
FT                 NDTWEITTLPAGRKKVGCKWVFKRKEDESGDVVRYKARLVAQGYSQKFGTD
FT                 YDEVFAPVAKQVTMRSLLTVAAERNLVVKHVDIKTAYLYGKLDEEIFMKQP
FT                 PGYETGNPAGVCRLKRSLYGLKQAARVWNRTIDDVFKRAGFLQSSADVCLY
FT                 VRTRNGQQAFILIYVDDILVACSSEVEFVEIVAHLQKCFKLTVLGDIKHFV
FT                 GIKVTKHQNGYLINQQGYITKLAARFGQTDAKGSKIPMDPGYQQKEEDSAV
FT                 LSNSDQYQSLVGGLLYIAVNSRPDISISASILGRSVSQPRVRDWTEAKRVL
FT                 RYLYSTRNHQLQLAANGKGLEVYCDADWAGDTKDRKSTSGFLIFLGGGVVS
FT                 WASRKQSCVALSSTESEFIALAEACQEIQWIRKLLKDLGKKVDHPICIRED
FT                 NQSCIRQVENEKVDQRSKHVDTKYCFIKDLKNKNIISLSYCPTEDMLADMM
FT                 TKPLTSVKLGKLRIAAGIVAIDVEEE"
XX
SQ   Sequence 3984 BP; 1080 A; 890 C; 1148 G; 866 T; 0 other;
     ataggttgtg ggccccagtc aaagcaatcc gcttgagcga atttgaattt tttcactttt        60
     cgctgccgaa gtagaagttt ctggaagtag gagtaccatg gagggaagca agatttcgat       120
     cgtgaagctg aacaattcca actatgctgt gtggaagttc aaggctgaaa tgctgctgac       180
     tcgagaggac acgtggaagt acatcgaaga tcaagccccg gagccgatga cggacgaatg       240
     gaagggtggt gaccgcaaag cgagagcgac gattgcgctg ctcgtggagg atcagcaaca       300
     cgccctgatt cgcgatacga agacggccaa ggaagcttgg gaaaatctcc agaaacacca       360
     ccagaagacg tccctctgct cgaaggttgc agttctgaag cgaatttgca acaaaacgta       420
     taaggacggg gacgacatgc agaaccatct attcgagctg gaagagctgt ttggtaagct       480
     gtcgtgtgct ggactggacc taggtgagcc actgatggtt gcattggtgc ttaggagcct       540
     ccccgattct ttcgacacgc tggcgacggc cctagaaagc cgttccgacg atgacctgaa       600
     gctggagctg gtcaaaagca agctgctgga tgaagtggcc aaacgggacc atggatcggc       660
     ggattcagcg atgaaggcaa gtttcctgaa gaaaaagaag ccgctggtgt gccatttttg       720
     caagaaaact ggccacaagc aaaaggagtg taagttgtac gccaaggagg cggaatcgga       780
     aaaaggtcgt tcaccaaaag caagaactgc acgcagtgaa gacgcggtga catttgccct       840
     gatggccggt gtccaagcga attctggtga gtggattgtg gactcgggag catcccggca       900
     catgtgcggc gaacgaggat ttttcgaaga tctcgaagaa agcgctgtga aatctgtcag       960
     cctggcggat ggaaaaaatg cgaaagtaga aggtgtcggt tccggtcggt tgttatgtta      1020
     ccatgacaac ggtaaaacaa ctacggttac ccttggcaac gtgctgttcg taccaagctt      1080
     ggaaatcaac ttgctctctg taccgaagct cgtagagaaa ggcgccgcag tgacgttcga      1140
     cgaagtaggg tgccggattc tcgtcggtgg ccaattggca gcggccgcga tcaagactgg      1200
     tggactctac aaggttagaa cctcgaaaga agttttgatg gctgcgaaag atcaccacaa      1260
     cgtggactgc caacacgtgt ggcatcggcg ctttgggcat cgtgacccca acgctctcgg      1320
     agaaatggta cagaaggacc tggtgaatgg actgaaggtg tacgattgcg gtgtgcgaga      1380
     gggatgcgac tgctgccaga aggccaaaat gagtcggaaa ccatttccga aatcggtgga      1440
     gaggaaatcc actgccgtgc tcgacctcgt gcacaccgac gtttgcggcc ctgttgagaa      1500
     cgtgtcggtg tctggatgcc gttattttat gaccatcatc gacgactaca gcagattctg      1560
     tgtcctgtac ctgctaagaa agaaggaaga tgttccagag aagataatgg agtacgtggc      1620
     catgatgaag acccagttcg gccgaccgcc gaaaatagtc agaagcgacc aaggaggcga      1680
     atacacagga agtgcgctga gggctttcta caaacgtgaa ggtattcgag cgcagttcac      1740
     cgcaagctat tccccccaac aaaatggtgt tgccgagagg aagaatcggt acctggtcga      1800
     gatgagccgg tgcatgttgt ttgatgccaa tcttccagag tgctactggg ctgaggcggt      1860
     aagtactgcc gtttatttgc agaacatttt gccatcgaaa tcgattccaa caaccccgtt      1920
     cgagctctgg catggaagga agccggatgt gacgcacctg aaagttttcg gcagtgcggc      1980
     gcacgtccat gtccccaagc agaagaggaa gaagttaagc cctacatcga cgaaactaac      2040
     gtttgtgggg tactcaccgg accacaaagc atatcgcttc ctggaccggt cgactcgacg      2100
     agtgattatc agccgtgatg cgaatttcgt tgaggaggag cgcctcgctc aagccgagaa      2160
     tgtcaatcgg catcatgaag cggagaatgt tgtcgatttc gagttaggaa tcaagccaac      2220
     cgctattgaa gtaacgccgg cggtcaattc agaaccgttg gatgcgtcgg acatggatga      2280
     gatcttctgg acgatgaaaa ttgcgattat gacactgctg atgaatcaac gttgaacgat      2340
     gaagccgctg cgacccctcg tagatcgaat cgtcaatcga agggtatacc accagtacgt      2400
     taccgtgaaa ctattggcat ggtgttggat tcgattgctg agccacgcag ttatgaagaa      2460
     gctttagcaa gtcctgagag cgagtactgg aagactgcga tggatgaaga attccgttct      2520
     ctgacggaaa atgacacatg ggagatcacc acactaccag ctggccgcaa gaaagttggt      2580
     tgcaagtggg tcttcaagcg caaggaggac gaatccggtg acgtcgtgcg atataaagcc      2640
     agattagtcg cccaaggata ttcgcaaaaa ttcggaaccg attacgatga ggttttcgcg      2700
     ccggtggcta agcaagtcac tatgcgttcg ctgctgacgg tggcggctga gcgaaatctc      2760
     gttgtcaagc atgtagacat caagactgca tacttgtatg gtaagttgga tgaagaaatc      2820
     tttatgaagc agccccctgg ttacgaaacc ggcaatcccg ccggtgtgtg tcgtctgaag      2880
     cgaagtctgt acgggctcaa acaagcggca cgagtatgga acagaacgat cgacgatgtg      2940
     ttcaagcgag ctggattttt gcagtcatca gccgatgtgt gcctctacgt tcggacgagg      3000
     aatggacaac aagcgttcat cctgatctac gtggacgaca tcttggtggc ctgctctagc      3060
     gaagtcgaat tcgtcgagat agttgcccat cttcaaaaat gtttcaagct gacggtgttg      3120
     ggtgacatca aacatttcgt tggcatcaag gtgaccaaac atcagaatgg gtacctcatc      3180
     aatcagcagg gctatatcac caagcttgct gcacggttcg gccagacgga tgcgaaaggg      3240
     tcgaaaatcc caatggaccc tggttaccag caaaaggagg aggattcagc tgttctttcg      3300
     aatagcgacc agtaccaaag tctggtgggt ggtttgctgt acattgcagt aaattcacgg      3360
     ccggatattt cgatcagcgc atcgattctc ggacgatccg ttagccagcc ccgagttagg      3420
     gactggacag aagcgaagag agtgttgagg tatctctaca gcactcgaaa tcaccagtta      3480
     cagctagcag cgaatggtaa aggcttggaa gtttactgcg acgccgactg ggccggtgac      3540
     accaaggacc ggaaatcaac ttctggtttt ctcatttttc tcggtggcgg agtcgtgagt      3600
     tgggcttcca ggaagcaatc gtgcgtggct ctgtcatcca ctgaatcgga gttcatcgct      3660
     ctggctgaag cgtgccaaga aatccaatgg atacgcaagc ttcttaagga tctggggaag      3720
     aaagtggatc atccgatctg catccgtgaa gacaaccaaa gctgcatccg gcaggtggag      3780
     aacgagaaag tggatcaacg atcgaagcac gtcgacacaa aatattgctt catcaaggac      3840
     ctgaaaaata agaacattat cagtttgtcg tattgtccta cagaagacat gctggcagac      3900
     atgatgacca aaccgttgac gagtgtgaag ctgggaaaat taagaattgc agcaggaatt      3960
     gtagctatcg atgtcgagga ggag                                             3984
//
ID   Copia-136_AA-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-136_AA_;
KW   Ty1_copia_Ele126; Copia-136_AA-I; Copia-136_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-124
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 124 BP; 38 A; 28 C; 19 G; 39 T; 0 other;
     tgttagagat tacgaatcgt agcaaccatt gaattatatt gaatgtaacg attactcgaa        60
     taaattagtc tttagtcaac cgtcaatccg ttcagtcgaa cttctcttgc cctccgaata       120
     ccca                                                                    124
//
ID   Copia-137_AA-I repbase;    DNA;    INV; 4108 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-137_AA_;
KW   Copia-137_AA-LTR; Ty1_copia_Ele138; Copia-137_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4108
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1500-1997] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..4085
FT                 /product="Copia-137_AA-I_1p"
FT                 /translation="MIPRDNSSSTSQSGGMTGGNSRQIAGGDGSTASGSGV
FT                 RSTATVRTFGSAVSLPVMEKLKGRQNYASWAFSMKMALIREGTWRAVKPLE
FT                 NVAVDPDMSDRALAAICLSLEKHNFSLVKNADTAKQAWDKLQQAFQDDGLI
FT                 RRFGLLDKLTTIKLEDCESVEDYVDQLVTTANDLSEIGFEVNDQWLASLLL
FT                 KGLPEYYNPMIMGLQASGIQLTADVVKTKIIQDVKWPLKSSSSEGALYSKQ
FT                 KIKRTKGGAEKKNGTCFTCKKPGHYAANCPQKQSSSFSKPKGKALCAMLAT
FT                 GEGREEDWFFDSGATSHMTRTVEGFIKHTDWVHSIDTASSQSIKSVARGTV
FT                 NLELEEGPIQVKDVWMVPDLTTNLLSISKICAKNMTVLFKFDGCEVRDEVG
FT                 DIVVTGTQENGMYKLNTKKSEKAFLTNNSSLWHRRLGHLNQQYMSKLTTMV
FT                 DGMPRQFGVTADCVACVQGKHTRSSFHCSSSRAQNPLDLVHSDVCGPVEVS
FT                 SIGGSRYFVTFVDDASRKVFVYFIESKSQVKEVYEKFKALVERQTGRKLKI
FT                 LRTDNGTEYINSTMKKSFERDGVIHQTTCPYTPEQNGTAERMNRTLVEKAR
FT                 SMLNDVGLPKKFWAEAVSTAAYLVNRSPTRSLETTPEEAWCQKKPDLKHLR
FT                 IFGSQVMVHCPKQKRQKFDSKSVKGVFVGYAENSKGFRVYDQERDEVIISR
FT                 DVVFINEEQKFQPKDVGEQYQDQPVEFIELLDWSETNAHPENEGLNVQQPA
FT                 RNQEMSSSVEIAEASTALPPQSGRSADEQQGFRRSGRERQPPGKYSDFMCF
FT                 SSITGPDDFTDPTPMASEMADDPSNYTEAIERSDRERWITAMREEIQALTE
FT                 NETWELTDLPNGRKAIKNKWIYKTKRGSDGTVERFKARLVVKGCSQRYGVD
FT                 FDEVYSPVVRYSTIRYLMSLAAQHNLDVEQMDAVTAFLQGKLADEVIFMEQ
FT                 PEGFVQNPKKVCRLKKALYGLKQSSRVWNLQLNEALREFGLERSLMDTCLY
FT                 FKIDGESMTFVTIYVDDFLLFTNDSEMKKKLKTFLHSRFKMKDLGEAKFCI
FT                 GLKITRDRVNGKIWLDQQQYVKDVLERFNMANCSPVSTPVDPGAKLNKSMC
FT                 PSEPKEVQSMQAIPYKEAVGSLMFIAQATRPDISFAVNMVSKFSSNPGRRH
FT                 WEAVKRIMRYLKGTSNNRLEYSVTGNPHFTGYTDADWGGDEDRRSTTGYVF
FT                 SKMGGAISWNCKRQDVVALSTCEAEYIALSRTTQEALWWQQMLQQINGDLQ
FT                 VPILCDNQSAICVARNQGYNPRTKHISIRYHFVREALDRGDITLDYVSTKQ
FT                 QPADGFTKPLTRQNHEAFKKLLGIVG"
XX
SQ   Sequence 4108 BP; 1234 A; 818 C; 1076 G; 980 T; 0 other;
     agtggttatg ggcccagtac aggctagaat ttgaacaaat tcgacgaccg caattcgtgc        60
     tagttcctga gatgattccg agggataatt caagttcaac ttctcaaagc ggaggaatga       120
     ctggcggaaa ctcgagacag atagctggag gtgatggttc aactgcaagt ggaagcggtg       180
     tgcggtcaac agcaactgtt cggactttcg gaagcgcagt atccctaccg gtaatggaga       240
     aattgaaggg aaggcagaat tatgcatcgt gggctttttc aatgaaaatg gcacttatac       300
     gcgaaggtac gtggcgtgca gtcaaaccgt tggagaatgt agcagtggat ccggatatga       360
     gcgatcgagc acttgcggcc atttgtttga gcttggagaa gcacaacttt agtttggtca       420
     agaacgctga taccgctaaa caggcatggg acaaactgca acaggcattc caggacgatg       480
     gactaatccg gcggttcggt cttctggaca aattgacgac tatcaagttg gaagattgcg       540
     aatctgttga agactacgtg gaccagttgg tgactacagc aaatgatctg agcgagatcg       600
     gttttgaagt caatgatcaa tggctggctt cattactgct gaaaggttta cctgaatatt       660
     acaatccgat gataatgggt cttcaagctt caggaattca attgactgcg gatgtagtaa       720
     agacgaagat tatccaagat gttaaatggc ctttgaagag ttccagcagt gaaggtgcac       780
     tctattcaaa gcagaagata aagcgaacga agggtggtgc agaaaagaaa aatggtacct       840
     gttttacttg taagaaaccg gggcattacg cagcaaactg tccccagaag caaagctcaa       900
     gtttttcaaa accgaaaggt aaggcattgt gtgctatgtt agctacagga gaaggaagag       960
     aagaagattg gtttttcgat tccggcgcaa catcacacat gacgcggacg gtagaaggtt      1020
     tcatcaagca tactgactgg gtacattcga tcgacactgc cagtagtcaa agcatcaaat      1080
     ccgttgcaag aggtacagtg aatctggagt tagaagaagg accaatacag gtgaaggacg      1140
     tttggatggt tccagatctg acgacaaacc tgttgtctat tagtaaaata tgtgctaaaa      1200
     acatgacagt cctgttcaag tttgacggat gtgaagttcg agacgaagtt ggcgatatcg      1260
     ttgttaccgg tactcaagag aatgggatgt acaagctgaa tacgaagaaa tcggaaaaag      1320
     cgtttctgac gaacaattca agcttgtggc accgcagact aggacatctg aatcagcaat      1380
     acatgagcaa acttacaacg atggtcgacg ggatgccgcg acaatttggc gtcacagcgg      1440
     attgtgtggc atgcgttcag ggtaagcaca ctcgaagttc ttttcattgt agttcctcgc      1500
     gtgctcaaaa cccgttggat ctggttcact ctgatgtctg cggaccggta gaagtttcgt      1560
     cgattggtgg aagccgttac ttcgtgacct ttgtggacga tgccagtcgc aaggttttcg      1620
     tgtatttcat cgagtccaag agtcaagtaa aagaagtgta cgagaaattc aaggcactag      1680
     ttgaacgaca aacgggacga aaattgaaga tactacggac ggataacggt acagagtata      1740
     tcaactccac gatgaagaaa agcttcgaac gcgatggggt gattcaccaa accacgtgtc      1800
     cttacacacc tgaacaaaac gggactgcgg agaggatgaa tagaacactt gtagagaagg      1860
     cgaggtcaat gttgaacgat gtcggactcc ccaagaaatt ttgggcggag gccgtatcca      1920
     cggcagcata tttggtgaac agatctccaa ctcgatcact agaaacaacg ccagaagagg      1980
     cgtggtgtca gaagaaaccc gacctgaagc acttacgaat atttggatct caagtaatgg      2040
     ttcattgtcc gaagcaaaaa cggcagaagt tcgattcaaa atcggtcaag ggcgtattcg      2100
     ttggatacgc tgagaattcc aaaggcttcc gggtatacga tcaagagagg gacgaggtga      2160
     taataagtcg agatgtcgtg ttcattaatg aggagcagaa gtttcagccg aaggatgtag      2220
     gagaacagta tcaagatcaa ccggtggagt tcatcgagtt gcttgactgg tcagaaacaa      2280
     atgctcatcc agaaaatgaa ggcttaaatg ttcaacaacc tgcacgcaat caagaaatgt      2340
     cttcttccgt ggaaattgcc gaggccagca ctgcgctccc accgcaatct ggtagatccg      2400
     ctgatgagca gcaaggattt aggcgcagcg gtcgggagcg ccagccccca ggcaagtatt      2460
     ccgatttcat gtgttttagt tcaatcactg gcccagatga ttttacagac ccaaccccga      2520
     tggcttccga gatggcagat gatccaagca actacaccga agcaattgag cgatccgatc      2580
     gagaaaggtg gataactgcc atgcgagagg agattcaagc gttgactgaa aacgaaacct      2640
     gggagttgac tgatttaccg aatggacgaa aggcaattaa gaacaaatgg atatacaaaa      2700
     cgaaacgtgg atcagatgga acagtggagc ggtttaaggc caggctcgtc gtgaaagggt      2760
     gttcccagcg ttacggagtc gatttcgatg aggtttactc ccctgtcgta cgttactcga      2820
     caattcgtta tctgatgtcc ttggcggctc aacacaacct agacgtagaa caaatggatg      2880
     cagtaaccgc ttttctgcaa ggaaaattgg ccgatgaagt cattttcatg gaacagcctg      2940
     aaggttttgt tcaaaatcca aagaaggtat gccgtttgaa gaaagcgttg tacggtttga      3000
     aacaatcgag ccgtgtgtgg aatcttcaac tgaatgaagc tttacgtgag tttggattgg      3060
     aacgttcttt gatggatacc tgcctatatt tcaagattga cggcgaatcg atgacatttg      3120
     taacaattta tgtggacgat ttccttttgt tcaccaacga ctcggaaatg aagaagaagc      3180
     tgaagacttt tctccacagc cgcttcaaaa tgaaagatct tggagaagca aagttttgca      3240
     tagggctgaa aatcacacgt gatagagtga atggcaagat ttggttggac caacagcagt      3300
     acgttaagga tgttctcgaa cggttcaaca tggcgaactg tagccccgtt tctactccag      3360
     ttgatcccgg cgcgaaactc aacaaatcga tgtgtccgtc cgaaccaaaa gaagtgcaga      3420
     gcatgcaggc catcccatac aaagaggcag tcgggtcatt gatgttcatc gctcaagcaa      3480
     cacgaccaga tatttctttc gctgtaaaca tggtgagtaa gtttagcagt aaccctggtc      3540
     gtaggcattg ggaggcagta aaacgaatca tgcgttacct gaagggcact tcaaataatc      3600
     gtttggaata ctcggtgact ggcaatccac attttactgg ctatacggat gcggattggg      3660
     gaggagatga agatcgaagg tctaccactg gttatgtttt tagcaagatg ggaggagcga      3720
     tctcgtggaa ctgcaaacga caagatgtag tggcattatc aacttgtgaa gccgaatata      3780
     ttgctttatc aaggactaca caagaagctc tctggtggca gcagatgttg cagcaaatta      3840
     atggagatct acaagtacca attctatgcg acaaccaatc tgccatatgc gttgcaagaa      3900
     atcaaggtta taatccccgt acaaaacaca tctcaattcg gtatcatttc gttcgtgaag      3960
     ctctggatcg tggcgacatt actttggact atgtttctac aaagcagcag ccagcggacg      4020
     gatttaccaa gccactaacc aggcagaatc atgaggcatt caagaaactg ctcggtatcg      4080
     taggttaagg aggagtgttg cggtatgg                                         4108
//
ID   Copia-137_AA-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-137_AA_;
KW   Ty1_copia_Ele138; Copia-137_AA-I; Copia-137_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-153
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 153 BP; 44 A; 36 C; 26 G; 47 T; 0 other;
     tgaaacgaag taacctacga aagctgtcgc tatgcatagc aacccacttg cttagtagcg        60
     acccctagtt gtttagtgtg tataaacgtg ttaataaatt ttcattagtt cttctgagca       120
     caaccagtac acacgcgttt ccatttactc tca                                    153
//
ID   Copia-138_AA-I repbase;    DNA;    INV; 4167 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-138_AA_;
KW   Copia-138_AA-LTR; Copia-138_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4167
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1558-2061] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           139..3594
FT                 /product="Copia-138_AA-I_1p"
FT                 /translation="MASSAKKAGIVQFAGDGFDTWKFRVETQLSAHGVRDV
FT                 LDEDAPAETATEAVKKAFKEKDEKAKALLVAFIADSHLEYVRDKATAKAMW
FT                 KSLESTFAKKGFAAQTYIRRSLAMLRMEEGCALKDHFRDFDELVRQLKDAG
FT                 ANLTELDQVSQLFISLPASYDVVTTAIENLEEKQLTLATVKSRLLAEEQKR
FT                 NGRDTCSGLSNRSDGTVLAARTEKQKKGIREGKPKFAGKCYGCGAFGHKRS
FT                 TCPKSRDQRVRAQAAEIPRDREVALIGSVPTVSSSAKSKIVWILDSGASRH
FT                 MAKEPGVFYGMETLAEPVTIESAMDNGSMKGAQQGTIKGIVSTRSGQVRLA
FT                 ISKVLFVPNLKFNLISLGALMNVGVDVEFMKDRAILTKDGEIIGEATKQGN
FT                 LYYLTMDVEIVGTALTTDDGVSKQDLWHKRYGHLSHRNLLKLQKAEMVTGM
FT                 GKLKTEEAFCETCAEAKLVRLPFNGSRPPTSRPLERVHTDVCGKITPATFD
FT                 GYQYFVTFLDDYTHFAVVYLMKRKDQVFEYFKIYQAMATAKFGVRIAALRC
FT                 DLGREYFSSSQLAYYEQHGIQVESTVGYTPQHNGVAERFNRTVSEKMRTLL
FT                 LESGAPKYLWGEALYNAVYVANRSPTEALEVEKTPAEMWHGEKPNVEKLRV
FT                 FGSLAFSWIPKQKRSKLDPTGKRCVFLGYAPCGYRLWDPKARKQFVARDIR
FT                 CNEVEFPFKITPAAQMSGCLTEQSIPLVVPEFTESEGDGVEVPEIDPANEI
FT                 EVAPDNITIADPQDDESEQEGEEAEDMVLEPSALPPQAVGKSSSQDGTTPR
FT                 TSGRECKRPGWFRDFMSSYSANTAVNISTQIPMCYDDIDGHPEATRWYQAV
FT                 NDELRALNHNQTWTLVKRPATVVPVPCKWVFAVKTDADGKPVRYKARLVAK
FT                 GFMQRKHIDYEETFAPVAKLTTIRTILAVANTRDLEIHQMDVRTAFLNGKL
FT                 TETVYMEVPEGVKSKPDEICLLERSLYGLKQSPRCWNNRFNNFLQDQGFVR
FT                 SNHDYCLYVRQQKEEIIYIIVYVDDLLIVAKTRATVEEIKRILKSEFEMAD
FT                 MGPLHHFLGIKVERDRARGVMKLSQTGLIDKMLQRFEMQDCKACKTPAEVR
FT                 LQLTRANGDCQYPYRELIGSLMYIMMGTRPDLCYIVGYLSRFQD"
XX
SQ   Sequence 4167 BP; 1206 A; 898 C; 1141 G; 921 T; 1 other;
     taactttagg ttatgggccc agtctcactt taacccctga agaccgaaga taggaaaatt        60
     gttggaatct gaagccctct tggaaatcgg aatcgttatt tagaagcagc cgtttacttt       120
     gtgaagaatc tgggaacgat ggcaagcagc gcgaagaaag ctggcattgt gcagttcgct       180
     ggtgatgggt tcgatacttg gaagttccgg gtcgagaccc agctttcggc ccatggagta       240
     cgggatgttc tcgatgaaga tgccccggca gaaacggcta ctgaagcggt caagaaggcg       300
     ttcaaagaga aggacgaaaa agcaaaggcc ttattggtgg cattcatagc ggacagccac       360
     ctggaatatg tacgggacaa ggccacggcc aaggccatgt ggaagtcttt agagtcgacg       420
     tttgcgaaga agggatttgc ggcccaaaca tacatccgga ggtcgcttgc catgctgcgg       480
     atggaagaag gatgtgccct gaaggaccac ttccgggact tcgacgaatt ggtgaggcag       540
     ttgaaagatg ccggcgcaaa tctgacggag ttggaccagg tgagccaact gtttatctcg       600
     ttgccagcct cgtacgacgt cgtcaccacg gcaattgaaa atttggaaga aaaacagctc       660
     accctggcaa cagtgaaaag tcgtttgttg gctgaagaac agaagcgaaa cggtcgtgat       720
     acatgcagcg gactatcaaa tcgatccgac ggaacggtac tggcagcaag gaccgagaag       780
     caaaagaaag gcatccgtga aggtaaaccg aaatttgctg gaaagtgcta cggttgcgga       840
     gcctttggcc acaagcggtc aacatgtccg aaatctagag accaacgagt acgagcgcaa       900
     gctgcagaaa ttcccaggga tcgtgaagtc gcgttgattg gttccgtacc gactgtaagt       960
     tcaagtgcga agagcaagat agtgtggatt cttgattcgg gtgccagccg gcacatggcc      1020
     aaagaacctg gagtgttcta tggaatggag acacttgctg aacctgtcac gattgagagt      1080
     gcgatggaca atggcagtat gaagggcgca cagcaaggaa ccatcaaagg tatcgtatcg      1140
     acacgaagcg gccaggttcg tttggccata agcaaggttt tgttcgttcc aaatttgaaa      1200
     ttcaacctga tctcgttggg agcgctgatg aacgttggag ttgatgtcga atttatgaag      1260
     gatcgtgcca tcctgaccaa agacggggag atcatcggtg aggccaccaa gcaaggtaat      1320
     ctctattatt tgaccatgga tgtggaaatc gttggcactg ccttgacaac cgatgatgga      1380
     gtcagcaagc aggatttgtg gcacaagcgc tacggacatt taagccatcg aaatctattg      1440
     aagctccaaa aagcggaaat ggtgactgga atgggtaagt tgaaaacgga ggaagccttc      1500
     tgtgaaactt gcgccgaagc aaaactggtg cggctaccat tcaatggatc aagacctcct      1560
     accagcaggc cgctggagag agttcacacg gacgtttgtg gaaaaattac accggccaca      1620
     tttgatggtt accagtactt cgtgacgttc ctggacgatt acactcattt cgcagtggta      1680
     taccttatga agcgaaagga ccaggtgttt gaatatttca agatctatca agcaatggca      1740
     accgcaaaat tcggtgtccg gatagcagcc ttgagatgtg acctaggacg tgaatacttt      1800
     agcagctccc agttggctta ttatgagcaa catggcatcc aggtggagtc aacggtaggt      1860
     tatacaccac agcacaatgg ggtcgctgaa cgtttcaatc ggaccgtttc tgagaagatg      1920
     cgaacgttgc tgcttgagtc tggggctcca aagtaccttt ggggtgaagc actgtataac      1980
     gcagtatacg tcgcgaatcg aagcccgacg gaagcactgg aagttgagaa aacaccagct      2040
     gagatgtggc atggcgaaaa accgaacgtt gagaagttgc gagtattcgg tagcttggcg      2100
     ttttcgtgga taccaaagca aaagcgaagc aagctcgatc caaccggtaa gcgatgcgtg      2160
     tttcttggat atgcaccatg cggctatcga ttgtgggatc cgaaggccag aaagcaattt      2220
     gtggcacgtg atataagatg taacgaagtc gagtttccgt tcaagattac accagcggcg      2280
     caaatgagtg ggtgtttaac agaacagtcg atcccacttg tagttccgga attcactgag      2340
     tcagaggggg acggtgtgga ggtaccggaa atcgaccctg ccaacgaaat cgaagttgct      2400
     ccggacaata ttacgattgc tgacccgcaa gatgacgagt cggagcaaga gggggaagaa      2460
     gccgaagaca tggtgttaga accgtcggca ctcccaccac aagcggtagg taagagttcc      2520
     tcccaggacg ggacaactcc gaggaccagt ggtcgggagt gcaagagacc aggttggttc      2580
     cgagatttta tgtcttctta tagtgcaaat actgctgtaa atatttccac tcagattcct      2640
     atgtgctacg acgacatcga tggccatcca gaagcaacac ggtggtatca ggctgtaaat      2700
     gacgagcttc gtgcgttgaa ccacaaccaa acctggacgt tggtgaagcg accggcgact      2760
     gtcgttccag ttccatgcaa gtgggtgttc gctgtgaaga ccgacgctga tggcaaacct      2820
     gttcgctaca aggctcgctt ggtagccaaa ggatttatgc aaaggaagca catcgactac      2880
     gaagaaacat tcgcacccgt cgccaagtta actacaatcc ggaccattct ggcggtggca      2940
     aacactcggg acctcgaaat acatcagatg gatgttcgta cagcgttctt aaatggcaag      3000
     ttaaccgaaa cggtatacat ggaggtacct gaaggcgtaa aatctaaacc ggacgagata      3060
     tgcttgctag aacgttcact ctatggcttg aagcaatcgc caaggtgttg gaacaaccgt      3120
     ttcaacaatt ttctccagga tcaaggcttc gttcggtcga atcatgatta ttgcctctac      3180
     gtgcgtcaac agaaagaaga gataatttat atcatagtat atgtagatga cttgttgatc      3240
     gtggcgaaga ccagagcgac ggtggaagaa atcaagcgaa tactcaagag cgaattcgag      3300
     atggctgaca tgggtccact tcatcacttt ttagggatca aggtggagag agaccgcgca      3360
     agaggcgtca tgaagctttc ccaaaccgga cttattgaca agatgctgca acgattcgag      3420
     atgcaagatt gcaaagcgtg caaaacacct gctgaagtgc gactacagct gacacgagca      3480
     aatggagatt gccaataccc gtacagagag ctgattggaa gcttgatgta cattatgatg      3540
     gggacacgac cagacctgtg ctatatcgtt ggctatttat caagattcca agatgmagca      3600
     ggacctgatc attggcaaca agcgaagcga gtacttcggt acttacaagg gacaaagcat      3660
     catcaactgg tatacaagag aaatccacat aaatcaccga cagagggatt cgttgatgct      3720
     gactatgcag gagatgaatc agatagaaag tgcgtctcag gttatctact gaaagtattt      3780
     ggctgtaccg tggcttggtc ttcaaagaaa caaggaaccg ttgcgatgtc atcaacagag      3840
     gccgaatacg tagcgatgag tagctgcatc agcgaggtaa tttggatgac cggtctaatg      3900
     actgatctgt ctgaagccaa gaatctgcgg cctgttccgg tatttgaaga caaccagggt      3960
     gccattgcca tggccaaaaa ggaggaaacc aaacgggtga aacacatcga cgttaaattc      4020
     cacttcattc gggatgctgt ggccgacgga cgaattcaac tggtatacat ccaatccaaa      4080
     catcaagagg cggatatttt aacaaaatcg ctagctgcac cactatttca agagctgcgg      4140
     cagaagattg gactatacgt aatcaac                                          4167
//
ID   Copia-138_AA-LTR repbase;    DNA;    INV; 149 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-138_AA_;
KW   Copia-138_AA-I; Ty1_copia_Ele71; Copia-138_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-149
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 149 BP; 50 A; 28 C; 24 G; 47 T; 0 other;
     tgattctgaa gaagctcaac ttagtagcag ttgatctaca ttaagaaagc ttacatcgta        60
     gtagcagttg atttgttctg acaacctata taagctcagt tcaattgtaa aatgttcatt       120
     cctcaataaa ccttcctaga agctagaca                                         149
//
ID   Copia-139_AA-I repbase;    DNA;    INV; 4413 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.04, Created)
DT   11-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-139_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4413
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4413
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           342..4403
FT                 /product="Copia-139_AA-I_1p"
FT                 /translation="MRMVMIKEGTWRAVNSADDVQISEDLSDRALATICLS
FT                 IERYNYSLVQSARTAKEAWHSLRTAFQDSGKYRKISLLRKLMRLELEDCSS
FT                 VEEYVDEILTTSQKLQEIGFPLNDEWMSLILMMGLPKRYEPMVMGMDASGI
FT                 KWTADWVKSKILQDVTIESSTRAGGSSGALATRPRQASKKDKSAMRCFKCE
FT                 KLGHYASECPQKTTNKNEKSSRKKALLACKKQNGSLEEWVLDSGAGDHMCK
FT                 DESMLVGAKVVSQTIFVADASEIPVVATGNVEIDADVDGECCSLDVSKVLC
FT                 VPDLAVNLLSVSRICKKGYCVNFTKESCVVKQESTGEIIAMGREKDGLYRL
FT                 SQVGQTSACVARPASNLEIWHRRLGHLNMDSVKRLPSMVSGMEVSNGAMLP
FT                 CVPCIKAKHQRLPFKSGGKRASDILEVVHSDVCGAMEKPSIGGNKYFVTFI
FT                 DDASRMTFIYFLKSKKDVFKAFLEFKAYSETQTGKKLKCMRTDNGGEYVGK
FT                 HFEEFLKTHGIRHETTVPHNPEQNGLAERMNRTIQERARCLLFDSKLDKRF
FT                 WAEAASTAVYLINRSPTKGILVTPFEKFTGRKPDLSKLRVFGARAMAYVPK
FT                 VKRAKWDPKSVPCILIGYSECSKAYRMYDTKKNQVFESRDVVILDERPVQE
FT                 LPETDNADLTIEPMVFTEVHQQEIVDGERRVNVIDDQHVVVNSSEDSDSAE
FT                 RDSKNSTADSALEEPLDSQQSLALPSQFTQNSTMRRSERERRFPGKYADFK
FT                 VTYSVLPQKFANPQNQHSQVGRDPQFGRLTSTALPSHSKEVTVELQHETGH
FT                 SDWERPVQGKLSSIIDSGNHLSPECISQVIQDPGTVQEALNREDHDQWIAA
FT                 MQSEYEALRSNETWCLVDLPKGRKALKNKWVFKIKHGTDGSIERYKAGLVI
FT                 KGFSQVKGVDYSETYSPVVRYATVRHLLALAAQLDLLVYQMDAVTAFLQGD
FT                 LDDEEIYMEQPEGFRDEAAPRKVCRLKKALYGLKQASRVWNIKLDHKLKQI
FT                 GLKRSKYDTCVYYKVTDGKLIIVAVYVDDFLLLSNDQGLVDDVKRQLSEEF
FT                 HMKDLGLAKQILGLQVTRTDGAISIDQERYIDELLEKYNLSDCNPVSTPLD
FT                 ANQRLLKTMSPRNEGEREKMKAIPFRELIGGLQFIAQCTRPDISHAVSVVS
FT                 SFCSDPGIPHWTAAKRILRYLKGTKQCKLTYRRNADPAFSGYSDADWANDP
FT                 ETRRSVSGYVFLQCGGAVSWSSRRQATVALSTTEAEYMALSMVTQEAVWWR
FT                 GFISELYDINESLVIKCDNKSSICLAEKEMGYSARTKHIDVRHHFVREQVE
FT                 AKAIKLEHVASNLQAADILTKALSGPKLQEDRKLLGVVQIPA"
XX
SQ   Sequence 4413 BP; 1268 A; 951 C; 1234 G; 960 T; 0 other;
     ggttatcggc ccagtatagc tgtttgcaac tggtagccta gcaaccggct aaacaaccag        60
     ccgaaaagtg aaaatttgtt cgcaagaagt cttcaagcag ttctgaaata tgtccgtgag       120
     aagaacggga gacacccatt caagacggtg ttccggttgg gaatggagaa cgaacaagcg       180
     atccagctca agtcatcggt tccggcggcc aaagggaaga agcccccggg ggaaaccaag       240
     aagcaagagc gtgtgatttg cggattccgt tcagtagcgc ttcccatcag tccctggaga       300
     agctgaaagg tcgagaggac tacgcagcgt gggcattcgg aatgcggatg gtgatgatca       360
     aggagggaac ttggcgtgcc gtaaattcag cggacgatgt gcagatcagt gaggacttgt       420
     cggaccgtgc tttagcgacg atttgtctca gtatcgagag gtacaattac agcctagtcc       480
     agagcgcaag aacggccaaa gaagcttggc acagtctccg aacggccttc caggacagcg       540
     gaaagtatcg caagattagt ctgctgcgga agctaatgag actggaactc gaagactgtt       600
     catccgttga agaatacgta gacgaaattt tgaccacaag ccagaaactg caggagatag       660
     gatttccgct taacgacgag tggatgtcgt tgatcctcat gatggggctg ccgaaaagat       720
     acgaaccgat ggtcatggga atggacgcct caggtatcaa gtggacggca gattgggtga       780
     aatcaaaaat tctccaggac gtgacgatcg agtccagcac cagggctggc ggttcaagcg       840
     gtgcgctagc aacacgtccg agacaagcaa gcaagaagga taaatcggcc atgaggtgtt       900
     tcaagtgcga gaaacttgga cactacgctt cggaatgtcc acagaaaacg acgaataaga       960
     acgagaagag ttctcgtaag aaggcactac tggcgtgtaa gaagcagaac ggatcactgg      1020
     aagagtgggt actggattct ggagctggag accatatgtg caaggatgaa agcatgctag      1080
     ttggcgcgaa ggtcgtatcg caaaccatct ttgttgcaga tgcatccgag ataccggttg      1140
     tcgccactgg aaacgtcgag attgacgctg atgtcgatgg tgagtgctgt agcctagatg      1200
     tctctaaagt cttatgtgtt ccagatctcg cagtaaatct cctttctgtg agtcgcattt      1260
     gcaagaaagg ttattgcgtc aattttacca aggaatcatg cgtggtcaag caagagtcaa      1320
     cgggagaaat catcgccatg ggtcgtgaaa aggacggcct ttaccggctg agccaggttg      1380
     gtcaaacgag cgcgtgcgtg gcacgtccag cctccaattt ggaaatctgg catcggcgat      1440
     tgggtcattt aaacatggac agcgttaaac gactaccttc catggtgagt ggtatggaag      1500
     tttcaaacgg ggcgatgttg ccttgtgtcc catgtatcaa agcgaagcat cagaggttgc      1560
     cgttcaaatc cggtggcaaa agagcgagtg acattctcga agtggtccat tcggatgtgt      1620
     gtggtgcgat ggagaaaccg tcaatcggcg gcaacaagta ttttgtcact ttcatcgatg      1680
     atgcgagcag gatgacgttc atctatttcc tgaaatcgaa gaaagatgtg tttaaagcgt      1740
     ttttggagtt caaggcttat tccgaaaccc agaccggaaa gaagttgaag tgcatgcgca      1800
     ctgacaatgg tggagaatat gtcggtaagc atttcgagga gtttctcaag acacacggaa      1860
     tccgtcacga gacaacagtg cctcacaatc cggagcaaaa tgggttggct gaacgcatga      1920
     accggacgat tcaggagcga gcaagatgtt tgttgttcga cagtaagttg gacaagagat      1980
     tttgggcaga agcggcatcg acagcggtat atctaatcaa ccgatcgcca acaaagggca      2040
     tcttagtcac tccattcgag aagtttacgg gaaggaaacc ggatttatcg aaactgcgag      2100
     tcttcggagc aagagcaatg gcgtacgttc caaaagtcaa gcgtgcgaag tgggacccca      2160
     agtcggtacc gtgcattttg atcggctact cggagtgttc caaggcctat cgtatgtacg      2220
     acacgaagaa aaatcaagtt tttgaaagtc gagacgttgt gatactggac gagcgaccgg      2280
     tacaggagtt accggagacg gacaatgcgg atttgactat cgaacctatg gtttttacgg      2340
     aagttcatca gcaagagatc gtagatggcg agcgccgggt gaatgtgatc gacgatcaac      2400
     acgtggtcgt caactccagc gaggattccg acagtgcaga aagggatagc aaaaattcaa      2460
     cggcggatag tgcgctagaa gagccactgg attcgcagca atcgcttgcg ctcccctcgc      2520
     aatttactca gaattctacg atgaggcgca gtgagaggga gcgcagattt ccaggcaagt      2580
     atgctgattt taaggtaaca tacagtgtcc tgcctcagaa atttgcaaat ccacagaatc      2640
     aacacagcca agtaggacgt gatccgcagt tcgggagatt gaccagcact gcgctcccgt      2700
     cacactcgaa ggaagtaact gttgaattgc aacacgaaac tgggcatagt gactgggagc      2760
     gcccagtcca aggcaagttg tctagtatca tcgatagcgg caaccatctt tcgccggaat      2820
     gtatttcaca ggtaatccag gatcctggta cggtgcagga agcactgaat cgcgaggacc      2880
     atgaccaatg gattgcggca atgcagtcag agtacgaagc attgcgatct aacgagacat      2940
     ggtgtcttgt ggatcttcca aagggacgga aagcgttgaa gaacaagtgg gtcttcaaga      3000
     tcaaacacgg tacggatggt tctatcgagc gttacaaggc aggacttgta atcaaaggat      3060
     tctcgcaagt gaaaggagtg gattacagtg aaacatattc tcctgttgtc cgctacgcta      3120
     cagttcgaca tctccttgcg ctggccgcgc aactggatct tctcgtctac caaatggacg      3180
     ctgtgacagc atttctccaa ggcgatttgg acgacgagga aatatatatg gaacagcctg      3240
     agggattccg agacgaagct gctccaagga aggtctgcag actaaaaaaa gctctgtacg      3300
     gactcaagca ggcaagcagg gtttggaaca tcaagctgga ccacaaactc aagcaaatag      3360
     gactgaagcg ttcaaagtac gacacgtgcg tgtactacaa ggtgaccgat ggtaagctca      3420
     ttatcgtggc ggtctatgtc gacgattttc tactgttatc caacgaccaa gggttggtcg      3480
     acgatgtgaa gcgacagtta agcgaagagt ttcatatgaa ggatctaggt ctagccaagc      3540
     aaattctggg actgcaagtc accaggaccg acggcgccat ctctatcgat caggaacggt      3600
     acatagatga gttgttagaa aaatacaatc tgagcgactg caatcctgta tcaacaccgc      3660
     tggacgcaaa tcagcgacta ttgaaaacga tgagcccacg aaatgagggg gaaagagaaa      3720
     agatgaaggc tattccattc cgtgagctga ttggaggact tcagttcatc gcacagtgca      3780
     caagaccaga catcagccat gcagtaagcg tagtcagctc gttttgcagt gatcctggga      3840
     ttccacactg gacagcggct aaacgaattt tgcgttacct caaagggacc aagcagtgca      3900
     agcttacgta caggaggaat gcggatccgg cattttctgg atacagtgac gctgattggg      3960
     cgaacgatcc agagaccaga cgatcagtca gtgggtatgt atttctacag tgtggtggag      4020
     cggtttcttg gagttccaga aggcaagcca ctgtcgctct atcaaccaca gaagcagaat      4080
     acatggcact ttcgatggtc actcaagagg ctgtctggtg gagaggattc atcagtgagc      4140
     tatacgacat caacgagtct ctggtcatca aatgcgacaa taaaagttca atctgtctgg      4200
     ctgaaaagga aatgggctat tcagcaagga cgaaacacat cgatgtgagg catcatttcg      4260
     ttcgtgagca agtagaggcg aaagcgatca agctggaaca tgtggcttcc aatcttcaag      4320
     cggcagacat cctcacaaag gcgttatctg gaccaaagct acaagaagac cggaagttat      4380
     tgggtgttgt acaaataccc gcttaagggg gga                                   4413
//
ID   Copia-139_AA-LTR repbase;    DNA;    INV; 91 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.04, Created)
DT   11-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-139_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-91
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-91
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 634-634 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 91 BP; 25 A; 17 C; 16 G; 33 T; 0 other;
     tgttagcgta gtaagcgttg cattataatt gagcaaataa atcattcgtt gctagactgt        60
     atacctgttc agacgctttt actctctatc a                                       91
//
ID   Copia-13_AA-I repbase;    DNA;    INV; 4154 BP.
XX
AC   AAGE02020441;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_AA_;
KW   Copia-13_AA-LTR; Copia-13_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4154
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020441; Positions   12009    7856.
XX
CC   Positions [1445-1978] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(95..1324,1328..4141)
FT                 /product="Copia-13_AA-I_1p"
FT                 /translation="MSLNHLNNGSGENGRTAAEAISVRVGGGSVALPAIER
FT                 LRGRENYTTWAFAMRMILIREGCWEAVSAETAEAQALVPEDQKQRALATIC
FT                 LSLENYNYSLVLDATDARAAWRKLESAFQDSGLNRKIGLLRKFTSIRLVNS
FT                 PSVEAYVDELMSTCHKLASVGFKVDDSWLAAMLLMGLPEHYEPMIMGLEAS
FT                 GIALTADAVKSKILQDVKIERGPTSCSSEGALYSKQGSRRGKATPAKSKSD
FT                 EKTCFNCRKPDHFAAKCPEKQQQSKMSKHNGLCSIFAMGDVNAGEWYFDSG
FT                 ATCHMARSDQEFTNEAKVSHNVGTANNTSMQAVAKGSVAMDSSNGRIDVSG
FT                 VLKIPDLATNLLSVSAICKKGKTVIFTKDKCEVLDQNGDLVVSGVEDGGLY
FT                 RVNRPEKSFLAGGIQLHRRLGHLHEGGLKKLKRIANGVDFQDGSLAGCVAC
FT                 LEGKQARRPFTSSASRSEELLELVHSDLCGPVEVSSLGGSRYFMTFLDDAS
FT                 KRVTVYFLKNKSQALEAFKSFKAKAERQTGKKLKILRTDNGKEYVNADFRK
FT                 VLEQDGIKHQTTCPYTPEQNGAAERMNRTLVEKARCMLNDAKLGKEFWAEA
FT                 ISTAAHVVNRCPTRALEDKTPEEAWTGKKPNLGHLKIFGSSVTTLVPKAKR
FT                 KKFDPKSEKGIFVGYCEDTKGYRVYDPVNDRFNVSRDVVVLQEGGALHVPE
FT                 KRTEKVEFMELWNEYVEHSGAAALPEIDRPMETVVSDAAQPAGVIDQPIGN
FT                 PGHSGTLGEAIADDSDKEEFEDACADIALPPQLIRPADEQGLRRSGRERRY
FT                 PGKYDDFISYSSFSGDVHSSQLSSNAMRDDDPTSYDEVLRRPDRELWMAAM
FT                 QEEIASLAENSTWVLADLPEGRKAIRNKWVFRTKRGPDGSIQRYKARLVVK
FT                 GCSQRPGLDYNEVYSPVVRYATVRYLMALAVRYNLDIDQMDAVTAFLQGEL
FT                 KDEDIYMLQPEGFVASNGKVCKLKKALYGLKQSSRVWNAQLDAVLQEFGLK
FT                 RSSVDPCLYWSMRGNKMMFVTIYVDDLLIFTNDRILKKKLKAHLQKRFQMK
FT                 DLGEAQHCLGIRITRKREDGKLWLDQQAYIEDIIDRFGVAEAHPIATPADP
FT                 SVKLDKSMAPKTKSEIEEMKLVPFKEAVGCLSFVAQVTRPDIAFAVNVVSQ
FT                 YGANPGRPHWEAVKRIIRYLKGTTTKKLEYSASAPAEIVGYSDADWGGDVD
FT                 DRKSMTGYVFLMQGGAISWNVKKQPTVALSSCEAEYMAMSRTIQEAMWWRN
FT                 LQSQFFEARSISVRCDNQSAISIANNGAYNPRTKHVSIRYHFVHDSLHQGI
FT                 VKLNYISTTEQPADGFTKPMTVQKQQKFRKLTGVAD"
XX
SQ   Sequence 4154 BP; 1141 A; 899 C; 1216 G; 898 T; 0 other;
     ataggttatc ggcccagcaa gaggaccata accggaagaa gtctggaaga tatttaaatt        60
     caagaaactt caagcagttt aatttggatt caaaatgtcg ctgaatcacc tcaataacgg       120
     aagtggagaa aacggaagga ccgcagccga agcaataagc gttcgagttg gtggaggttc       180
     cgtggcgtta ccggccatcg agaggctgcg cggtagggag aactacacga cgtgggcgtt       240
     tgcgatgcgg atgattctca tccgagaagg atgctgggaa gccgtgagtg ccgaaacggc       300
     cgaagctcaa gcgttagtgc cggaggatca gaagcagagg gcgttggcaa ccatctgttt       360
     gagcctggag aactataatt acagtttggt tctggatgcg accgatgcgc gagcggcctg       420
     gaggaagctc gaatctgcgt ttcaagacag cggcctgaat cgaaaaattg ggttgctaag       480
     gaagttcact tcgatacgtc tcgtcaacag tccaagtgtc gaagcctacg tggatgagct       540
     gatgagtacc tgtcacaagt tggcctcggt aggtttcaaa gtggacgatt cctggctggc       600
     tgccatgttg ctaatggggt taccggagca ttacgagcct atgataatgg gcctcgaggc       660
     gtctggtatc gcgctgacgg cggatgcagt caagtcgaag attttgcaag atgtcaagat       720
     cgagcgaggg ccgaccagct gcagcagtga aggagctcta tatagcaagc agggttccag       780
     aagaggcaag gctacgccgg cgaaatcgaa gagtgacgag aaaacctgtt tcaactgtag       840
     gaagcctgat cattttgctg ccaagtgccc ggagaagcaa cagcagtcga aaatgagcaa       900
     gcataacggt ctttgttcca tttttgccat gggagacgtg aacgctggtg aatggtattt       960
     cgattcgggt gccacttgtc acatggcacg gtcggatcaa gaattcacca atgaagcgaa      1020
     ggtgagtcac aacgttggga cggcgaacaa taccagcatg caagccgttg ccaagggttc      1080
     cgtcgcaatg gatagcagca atggtcgaat cgatgtcagc ggagttctga agatcccgga      1140
     tctcgccaca aatttgctgt cggtgagtgc tatctgtaag aaagggaaaa ccgttatttt      1200
     caccaaagat aaatgtgagg ttctggacca aaatggcgat ctggtcgtca gcggagtcga      1260
     ggatggaggt ttgtacagag tcaaccgtcc ggagaaatcg ttcttggcgg gcggaattca      1320
     gctctgacat cgacgtcttg gtcatctaca cgaaggtggt ctgaagaagc tgaagcggat      1380
     cgcaaacgga gtcgattttc aagatggatc gttggctggt tgtgttgcct gtctcgaagg      1440
     caaacaagcg aggcgtccgt tcacaagtag tgcgtccaga tcggaagaac tgttggaatt      1500
     ggtacattcc gacctctgcg gaccagtgga ggtttcgtcg ctaggtggaa gtcgctattt      1560
     tatgacgttt ttggacgatg cgagcaagcg tgtaacagtg tatttcttga agaacaagag      1620
     tcaagccctt gaagcgttca agtcgttcaa ggcaaaagcg gagaggcaaa cgggtaagaa      1680
     gctgaaaatc ctgcgtacag acaatggaaa agagtacgtg aatgcagatt tccgaaaggt      1740
     gttggagcaa gacggtataa agcatcaaac aacgtgtcct tatacgcctg agcagaacgg      1800
     ggcagcagag cgaatgaacc gcacgctggt tgaaaaagcg cggtgcatgc tcaacgatgc      1860
     aaaactaggt aaggagtttt gggcagaggc tatttcgacc gcagcgcatg tggtgaaccg      1920
     atgtcctaca cgagcactgg aagacaaaac gccggaagaa gcatggaccg gcaagaagcc      1980
     gaatctgggg catctcaaga tttttggttc gagcgtaacg acgctagtac cgaaggcgaa      2040
     aaggaagaag tttgacccca aatccgaaaa aggtattttt gtcggctact gtgaagatac      2100
     gaagggttat cgagtgtatg atccggtgaa tgaccgtttc aacgtcagcc gagatgtcgt      2160
     ggtactgcaa gaaggtggag ccctccatgt accagaaaaa cgaacggaaa aggttgagtt      2220
     catggagctt tggaacgaat atgtcgaaca ttccggtgct gcagcacttc ctgaaatcga      2280
     tcgaccgatg gaaaccgttg tgtcggatgc agcccagcct gccggtgtta tcgatcaacc      2340
     gattggtaat cctggccata gcggaacact gggagaagct atcgcagacg acagtgataa      2400
     agaagagttc gaggatgcct gtgccgacat tgcgctccca ccgcaactaa ttagaccagc      2460
     tgatgagcaa gggttaaggc gcagcggtcg ggagcgccgc tacccaggca agtacgatga      2520
     ttttataagt tatagttcat tttctggcga tgtccattcc tctcagttat caagcaatgc      2580
     gatgcgcgat gatgatccga cgagttacga cgaagttctg cggcgacccg atcgagaact      2640
     ttggatggcg gcgatgcaag aggaaatcgc ctccctcgcc gagaacagca catgggtgct      2700
     agcggatttg ccagaaggaa gaaaagcgat tcggaacaaa tgggtattca gaacgaagag      2760
     aggtcccgac ggaagtatcc agaggtacaa ggcccgcctc gtggtgaagg gctgttctca      2820
     acgacccggt ctggattaca acgaagtgta ctcaccggtc gtgcggtacg cgaccgtccg      2880
     atatttgatg gctctggcgg tgcgttacaa tttggatatc gatcaaatgg acgctgtaac      2940
     agcgtttttg caaggcgagc tgaaagatga agacatctac atgctgcagc cggaagggtt      3000
     cgttgcgtcg aacggaaaag tctgcaaatt gaagaaggcc ctctacggcc ttaagcagtc      3060
     cagtcgcgtg tggaacgcgc agttggatgc ggtgttgcag gaatttggat tgaaacgatc      3120
     gagcgtagat ccttgtctat actggtcgat gcgtgggaac aaaatgatgt ttgtgaccat      3180
     ctacgtcgac gatctcctaa tattcacaaa cgaccggatt ctgaagaaga agttgaaggc      3240
     tcatctgcag aaacggttcc aaatgaagga cctaggagaa gcacagcatt gtctcggcat      3300
     ccggatcact aggaagcgtg aagatgggaa gctatggttg gaccagcaag cctacatcga      3360
     agacatcatc gatcgttttg gtgtggccga agcccaccca attgcaacac cggcggatcc      3420
     gagcgtcaag ttagataaat cgatggcacc gaagacaaaa tctgaaattg aagaaatgaa      3480
     gttagttccg tttaaggaag cggtagggtg cttgtctttt gtagctcaag ttactcggcc      3540
     ggatatcgct tttgccgtca acgttgtgag ccagtacggt gccaaccctg gccgtcctca      3600
     ctgggaagcg gtgaagagga taatacggta cctgaaaggt actaccacga agaaactgga      3660
     atattcggca agcgctccag cggaaattgt tggatacagc gatgccgatt ggggaggaga      3720
     tgtggatgat cggaaatcca tgaccggcta cgtgttcctg atgcaaggcg gtgctatctc      3780
     gtggaacgtc aagaagcaac ccaccgttgc tctctcatcg tgtgaagcgg agtatatggc      3840
     catgtcgcgc actattcagg aagctatgtg gtggagaaac cttcagtcgc agtttttcga      3900
     agcaagatcg atttccgtgc gatgcgataa tcaatcggcg atcagcattg ccaacaatgg      3960
     agcgtacaac ccgaggacaa agcacgtcag catacggtat cacttcgttc acgacagtct      4020
     acatcaaggc atcgtgaagc tcaattacat ttctacaacg gaacagccag ctgacggatt      4080
     caccaaacca atgaccgtac agaagcagca gaagttccgg aagttaacag gcgtcgcgga      4140
     ttagggagga gtgt                                                        4154
//
ID   Copia-13_AA-LTR repbase;    DNA;    INV; 126 BP.
XX
AC   AAGE02020441;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_AA_;
KW   Copia-13_AA-I; Copia-13_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-126
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020441; Positions    7855    7730.
XX
SQ   Sequence 126 BP; 35 A; 21 C; 24 G; 46 T; 0 other;
     tgcgatcgta gtagcacaat aatacgcgtc gctatgtgtt ttgttattag ttgctaagat        60
     agaataaaat tttcattcca ctgctagtaa tcagtcaagc tagacgtttt atttgattgc       120
     tctgca                                                                  126
//
ID   Copia-13_CQ-I repbase;    DNA;    INV; 4159 BP.
XX
AC   AAWU01014418;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_CQ_;
KW   Copia-13_CQ-LTR; Copia-13_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4159
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 341-341 (2011).
XX
DR   GenBank; AAWU01014418; Positions   39320   43478.
XX
CC   Positions [1470-1997] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..2981
FT                 /product="Copia-13_CQ-I_2p"
FT                 /translation="MADAKVQVEKLNDENYVMWKFKMELLLFKEGLTSTVT
FT                 QNKPANPDAAWLKKDGDAKVAIGLAVENDQLVHICRKTTSKEMWDALQEIH
FT                 GESNYSNTLHVLRKLCSLRLREGGNLPEHLKEMTAMANHLEMNGEGLKETT
FT                 FVGLIISSLPPSYGSLINVIENLPKAEIKLDNIKGKLRDEWRRRRDCSEDE
FT                 QLHEKALKSSVGGSSKATDKKKTKKAGACHNCGAVGHWKRDCPKLSKATSG
FT                 SPKANLAVERPAGMEMCLAVSGECSPNRWYLDSGATSHMTSNTSLLNNVDA
FT                 SKQPDICLADGTRIKSSGAGTGKLISVTGSGIRMSVTLADVYHVPSLAGNL
FT                 LSVSRMCDLGYAVCFDKVGCKVMRGEEIVLVGERSGGLYRLKEFPERALVS
FT                 KTEHPALCEHMWHRRLGHRDPDAVSKIVREDLGFGLKMEKCAVKCVCEVCL
FT                 KGKMSRDSFPKQSQSKSSAVGDLIHTDVGGPMEEATPSGNRFYVIFVDDYS
FT                 CYTVLCLLKKKSEVEAKIREYCSLMKNQFGYYPKVIRSDGGGEYSSGTLKK
FT                 YLAENGVVLQQTAPYSPQQNGKAERKNRYVVEMARCLLVESNLGKKYWGEA
FT                 ISTANYLQNRLPTSTVERTPYELWHGKKPSYTHLRVFGSEAYVHVPKEKRR
FT                 KLDAKAVKMTFVGYAEGRKAYRFLHPDADWIVISRDAKFLENTGEEAVQDS
FT                 GDLFADDAEPDAAKEPETFDVPISGGEQRDREPAVAGPSAETTEDDVEQLE
FT                 PDVEQIELDEDTTDETGSSELETSVYENASEGDLSFHGFPLDEIARRSLRS
FT                 TKGVPPVRFDEAFVVAAAPTNDEAEPTSVREALRCDQSVEWKSAMEEELQS
FT                 HAENGTWELVPLPPGRQPVGCRWVYKVKRNAAGEAIKYKARLVAQGYCQKF
FT                 GQDYDEVFAPVIKQTTLRMLLAVASKHNLQLRHFDVKTAYLNGVLQRNST"
FT   CDS           2981..4141
FT                 /product="Copia-13_CQ-I_1p"
FT                 /translation="MRQPAGFEEQGKEDLVCRLRRSIYGLKQSARCWNQRL
FT                 HTVLEQLEFEQSTADPCLYVKVVEGKRIYLLVYVDDILVGCKSGGEIEKIY
FT                 SLLKKEFKMTDLGPANFFLGLEVKCNDGKYGISLEGYIDRIAERFELSDAK
FT                 GAKSPMDEGFTKTVEESRPLENSTEYRSLVGALLYVAVCARPDIAVSASIL
FT                 GRSVTAPTLADMAAAKRVVRYLKATKSWQLRYDDPDGELVGYSDADWAGDL
FT                 KTRKSTTGSVFLYSGGAVSWASRLQQCVTLSSMESEFVALCDTSQEAVWLL
FT                 TLIEDFGEPEQKPLTIKEDNQSCIKFVAAERTTRRSKHVDTKHCYVKELCE
FT                 RKVLQLEYCPTEDMIADVLTKPVGAVKHRKLSSLLGLAAPGSGR"
XX
SQ   Sequence 4159 BP; 1019 A; 1036 C; 1327 G; 777 T; 0 other;
     acccgaatag gttgtgggcc cacagtggtg aagatttgag tttttccgcg agtgaaagtc        60
     gggaaaagta gttttttctg atcggacttt gtgcgtcgcg tgcatcagtg aaaaacaaga       120
     tggcggacgc aaaggtgcag gtggaaaagc tgaacgacga gaactacgtg atgtggaagt       180
     tcaagatgga actgctgctc ttcaaggaag gcctgacctc aacggtgacg cagaacaaac       240
     cggccaatcc ggatgcagcc tggctcaaaa aggacggaga tgccaaggtg gcgatcgggc       300
     tggccgtgga gaacgatcaa ctcgtccaca tttgtcggaa gacgacgtcg aaggagatgt       360
     gggacgcgtt gcaggaaatc cacggggagt cgaactacag caacacactg cacgttttgc       420
     ggaagttgtg ttcgttgcgg ctcagagaag gcggcaacct cccggagcac ctcaaggaga       480
     tgacggcgat ggcaaaccat ctggagatga acggtgaagg cttgaaggag acaacgttcg       540
     tggggctcat catctcgagc ctgccgccgt cgtacgggag cttgatcaac gtgatcgaaa       600
     atctcccgaa ggcggagatc aagttggaca acatcaaggg caagctccgg gatgaatggc       660
     gacgccgtcg ggattgctcg gaagacgagc agctgcacga gaaggcgctc aagagctcag       720
     ttggtggcag ttccaaggcg accgacaaga agaaaacgaa gaaggccggt gcgtgccaca       780
     actgtggagc tgtcggtcac tggaaacgcg attgcccgaa gctgtccaag gcaacgtcgg       840
     gttcaccgaa ggcaaatctg gcagtggagc gaccagctgg gatggagatg tgtctggccg       900
     taagtggaga gtgtagccca aaccggtggt acttggactc cggtgctact tcccacatga       960
     cgtccaacac atcgctcttg aacaacgtgg acgcctcgaa gcagccggac atttgtctgg      1020
     cggatggaac caggatcaaa tccagcggcg cgggcactgg gaagctgatc tccgtgacgg      1080
     gcagtggaat ccggatgtcg gtcaccctgg ccgatgtgta ccacgtgccg tctctcgccg      1140
     ggaatctcct ctcggtcagc cggatgtgtg atttgggcta cgccgtgtgt ttcgacaaag      1200
     ttggctgtaa agtgatgcgg ggcgaggaaa ttgtgctagt gggggagaga agcggcggct      1260
     tgtaccggct gaaggaattc cccgagcgcg ccctggtctc gaagacggag catccagcgt      1320
     tgtgtgagca catgtggcat cggcgcctgg gtcaccgaga tcccgatgcg gtgtcgaaga      1380
     ttgtgcgaga agatctgggc ttcggcctga agatggaaaa gtgcgccgta aagtgtgttt      1440
     gtgaagtgtg cctgaagggg aaaatgagcc gagacagttt tccgaagcag tcgcagagca      1500
     aatccagtgc cgtgggagat ctgattcaca ccgatgtggg tggccccatg gaggaggcca      1560
     cgccaagtgg caacaggttc tacgtgattt ttgtggacga ctacagctgc tacaccgtgt      1620
     tgtgcctgtt gaagaagaag tcggaagtgg aagcgaagat ccgggagtac tgcagcctga      1680
     tgaaaaatca gttcgggtac tacccaaaag tgatccgttc ggacggcgga ggggaatatt      1740
     caagtggaac gctgaagaag tacctggccg agaacggtgt tgtgctgcaa cagacggcgc      1800
     cgtattcgcc gcaacagaac ggcaaggccg agcgaaagaa ccgctacgtg gtggagatgg      1860
     cgcgctgtct gctggtggag tcgaacttgg ggaagaagta ctggggcgag gcgatcagca      1920
     ctgccaacta cctgcagaat cgcttgccta cttcgaccgt ggaaagaaca ccttacgaac      1980
     tgtggcacgg aaagaagcca tcctacaccc atctgcgtgt gttcggttcg gaagcctacg      2040
     tccacgtacc caaggagaaa cgtcgtaaac tggacgccaa ggccgtgaag atgactttcg      2100
     tcggctacgc ggaggggcgc aaagcctacc gtttcctgca tccggatgcc gactggatcg      2160
     tcattagccg cgatgccaag tttctggaga acaccggtga ggaggcagta caagacagcg      2220
     gcgacctgtt cgcggacgat gcagagcctg atgcggccaa ggaaccggaa acgtttgacg      2280
     tgccgatcag cggtggagag cagcgagatc gcgagcccgc ggttgctggc ccgagtgcag      2340
     aaacgaccga agacgacgtg gagcaactag agccagacgt ggagcagata gaactggacg      2400
     aggacacgac cgacgaaaca ggaagttcgg aactggagac gtccgtgtac gaaaacgcgt      2460
     cggagggaga tttgtctttc cacgggtttc ctctcgacga gattgcgcgg cgctcgctgc      2520
     gatcaaccaa gggtgtgcca ccagtccgtt ttgacgaagc tttcgtggtt gctgcggctc      2580
     ccacgaacga cgaagcggaa ccaacaagtg tgcgggaggc gctgcggtgt gaccaaagtg      2640
     ttgagtggaa aagtgccatg gaagaagagc tgcagtcaca cgccgaaaac ggaacctggg      2700
     agctggtgcc actgccacct ggccgccaac ccgtcggctg tcgctgggtg tacaaggtca      2760
     agaggaacgc cgcgggcgag gccatcaagt acaaagctcg tctggtagcc cagggctact      2820
     gccaaaagtt cggacaggac tacgatgaag tgtttgcgcc agttatcaag caaacaacgc      2880
     tgcggatgct actggccgtc gcgagcaaac acaacttgca gctgcgacac ttcgacgtca      2940
     agacggcgta cttgaacgga gtgctgcaga ggaactctac atgaggcagc ccgccggatt      3000
     cgaagagcaa ggcaaggagg acctggtgtg ccgtttgagg aggagcattt acgggcttaa      3060
     acagtcggcc cgttgctgga accaacgtct gcacacggtc ctcgagcagc tggagttcga      3120
     gcagagcacc gcagatccct gtctctacgt gaaggtcgtc gaaggtaagc gcatctacct      3180
     gttagtctac gttgacgaca tcttggtcgg ctgcaagtct gggggcgaaa tcgagaagat      3240
     ctattcgttg ctcaagaagg agttcaagat gactgacctt ggcccagcta actttttcct      3300
     ggggctggag gtcaagtgca acgacgggaa gtacggcatt tccctcgaag gctatatcga      3360
     ccgtatagct gaacgctttg aactctcgga tgccaaaggt gccaaatctc caatggacga      3420
     aggattcacc aagaccgtag aagaaagtcg tccacttgag aacagcacgg agtatcggag      3480
     tctcgtcggt gcgctcctct atgtggcggt ttgtgccaga ccggacatag cagtcagtgc      3540
     ctcgatactc ggacggagtg tcacggcgcc cacgctggcg gacatggcgg cggcgaagcg      3600
     agtggtccgc tacctcaaag ccacgaaatc ctggcagctc cgctacgacg atccagacgg      3660
     agaattggtc ggctactccg acgcggattg ggccggcgat ttgaaaacca gaaaatctac      3720
     gaccggatcc gtcttcctct attccggagg agctgtttcc tgggcgagcc gtctccagca      3780
     gtgcgtgact ctgtcgtcca tggaatcgga gttcgtcgct ctttgcgaca catcccaaga      3840
     agcagtctgg ctgctgaccc tgatagaaga cttcggcgaa ccggagcaga aaccgttgac      3900
     catcaaggag gacaaccaaa gttgcatcaa atttgttgca gcagaaagaa caacgcggcg      3960
     ttccaagcac gtagatacca agcactgcta cgtgaaggaa ctctgtgaac ggaaggtgct      4020
     acagctggag tactgtccga ccgaggacat gattgcggac gtgctcacca aacccgtagg      4080
     agccgtgaag caccggaagc tgtcttcgct gcttggactt gcagcgcccg gcagtggtcg      4140
     ttgaggagga gtattagag                                                   4159
//
ID   Copia-13_CQ-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   AAWU01014418;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_CQ_;
KW   Copia-13_CQ-I; Copia-13_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-216
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 342-342 (2011).
XX
DR   GenBank; AAWU01014418; Positions   39104   39319.
XX
SQ   Sequence 216 BP; 46 A; 59 C; 36 G; 75 T; 0 other;
     tgtaaacaac gactgtccta tccctcgacc gttgtcgcta ctttgacagt tgtgcttcct        60
     ttcttgcttg cgagcaacaa cgccttctgc gttttgccac ttccgtttct cactctcaaa       120
     gttgatctcg aactgtaaac ctcgcgctcg aatcgaaata caattaattc gtttgtaaaa       180
     ctcatttctc gcgttttgtt tccgttaaac tgtgca                                 216
//
ID   Copia-13_DTa-I repbase;    DNA;    INV; 4088 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   02-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4088
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (02-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, paired flanking LTRs are 99%
CC   identical to each other.
XX
SQ   Sequence 4088 BP; 1307 A; 834 C; 1019 G; 928 T; 0 other;
     ggttatgggc ccagcctaac caagagaacc caggaagctt tttctcaatc ttgtacggag        60
     gaacaaaatc gcgaaatcaa aaatggcggg tgcgttcatc aagatcgagg cgcttaacgc       120
     agaaaactac gatacgtgga aattaaagat gcgagccgta ttagtgaaaa acgatttatg       180
     gcagtatgta agcggtacac aagaatgccc gtctgaagaa gacaagaagg tggcatggtg       240
     gcggcaagat gaaaaggccc gagcggacat aatattgtcc atttgcgcgt ccgagttgcc       300
     actactggat ggctgcgaaa cctcacatgc ttgttggcta aaacttcagg agcagtttca       360
     atcaagaggc cccgtgcgaa aagctggcct attgaaacga atcgcgctat cacgaatgtc       420
     tgaggatgga gatgtacgcc aacatatcca tgatttcttc gacgccgtgg ccaaactcaa       480
     ggaaattgga gttgaaattg gtgatgatct gttagcaata ctattgctat acagtttgcc       540
     ggaatcgtac gaaacatttc ggtgcgcgat ggaatccaga gacgacttgc caggtccaag       600
     tgtacttcgt gtcaaaattc tagaagaatc tagtgcgcgt aaaacaaaaa gcgaacgaga       660
     cgatcaaagc gcaatgtacg cgagccggca taagtacagc aagcagaagt acagctatgc       720
     gaaggaaacg gcaccaaagg agaacagaaa atgtttcgcc tgcaataaaa ttgggcatct       780
     agcgcggaac tgcacgttga gacgaaacgc tagacagaat gagaagtccg atgaaaaagg       840
     gaatatggca acagcgctaa atattgcaga agaggcaaac ggtgcagcag cccttggcag       900
     tatgtggtgt attagtgggt gcacatctca tatgagttcg aacgcgagat tatttaaaaa       960
     tatagagaac actaataaaa agctgcattt ggcaaataag gaaacaacca aagtaaacgg      1020
     agtcggcgat ataaacgtgc aggtaaaagc aaacgacata aaacgggaga gcgaagtaac      1080
     actgagagaa gttttgtatg tgtccgatct gcgccaaaat ttattatctg tgtcgaaaat      1140
     gacagacaaa ggttttgagg tactttttcg gaagaatgat gcagccgttt taaacagcgg      1200
     gaaagagtgg ttcattgcta aacgttttgg agatctctac tatttggaca cgaaggcgca      1260
     tcaggcaaat caggccatga cagagaatca aaacaatttc gatttgtggc atcgcagaat      1320
     gggccaccta aatggaagtg atctgataag tatggcaaga tcaggaaaag cgcatggttt      1380
     ggagcttggt gacaacttaa acccatccga gtgtgaagtc tgtatcagtg aaaaacaaac      1440
     agcgtcttca tacaaacggg cggaagataa gagaaccagc tgtttattag aaattgtaca      1500
     tagcgacgtg tgcggcccaa tgcgcaccaa atcaaatgga ggccgcaaat attttgtcac      1560
     ctttatagat gactacagcc gctcttgtga gacacatttt cttaagcaga aatctgatgt      1620
     atttgaggct ttcaaggcct ataaagcctc ggcggaaaac tttacaggca ggaagattaa      1680
     ggctcttcaa tcagacaacg gcaccgagta ttgcaataag gcaatggagg agtttttcaa      1740
     gacacatgga ataaggagac gactaactac accgcacacg ccgcaacaaa atgggattgc      1800
     ggagcggcaa aaccgtacgt taatcgagat ggcccgctgc atgatgaggc agtctggggc      1860
     tccaccatcg ttttgggcag gagcggtaaa cacggcaacc tacatccgaa acagatgtcc      1920
     gacaaaggct ttagacggcg gaattcctta tacccagtgg acaggtaaaa taccgactgt      1980
     atggcacctg cgtattttcg gtacaaaagc atatgcactt gttaaaggca aaaatcaagg      2040
     caagttcgaa tcaaggtctg aagagtgcgt tctagttgga tatgactcag agttcaaagc      2100
     gtatcgtttg tattctccga agaggcgagt gactttcgta agcaaagatg ttaaattttt      2160
     gaatattcca ggatttaaca gcgctcactc cgagttctac gatgacgagc aagaaatcgg      2220
     cgttgaaatc catacaaacc aagaagctga tcgaagtcat ccggaagacc acgatgctga      2280
     ctcatcaagc gacgacatgg tacaaacaaa tgcgccgaaa catggtagag gacgtcccaa      2340
     aatagaaaga aatgggaaac ccggaggaag aaatagttaa agatgccgat ctcccaccga      2400
     acgacgtttt tgaggaatgc gaaagtgttt atgtagccat cacggatgat ccggaaaccc      2460
     ttgacgaagc gaagagctcc gttgactcta tcggctggtc ccaggcaata gaggacgaat      2520
     acatggcgca cattatcaac caaacgtggg agatagttga acggccaagc ggtagaaagg      2580
     ttatcggaaa caaactagtg tttcgaacca aggacgacgg ctccaataca ggaaagaaga      2640
     aagttcgact tgtagccaaa ggctgctctc agcgtcctgg agaggatttt caggaatcgt      2700
     tttccccggt ggtgcgatct acgtcaataa ggctattggc agctctagca gcagaatttg      2760
     atatgcaaat ccatcagatg gacgtcgtca ctgcttacct caacggcgag ctagaagaaa      2820
     aggtgtacat gagtgttccc gatgacttta tggagttcgc gcggcgacta aaagcaggtg      2880
     gacccatcgt atccaaacag attgcagctg atcccaaaat tgtggctatg gcaaatgaga      2940
     tgaccgcagg agaaaagaga gccacaaatc ccacatgcct aatcaaaaag gcgctttatg      3000
     gattacggca atcaggtttg cgctggtact gcaagctcac cgaaaaactt aaagaaatcg      3060
     gatgcgagcc aacgaaacag gatccatgtt ttttcgcaaa gagagaaggg cagaaaattt      3120
     tgcttatcac tatttatgtc gacgatttat tgttagccac aaatcaccca aaattgctta      3180
     ttcaagcgaa agatcattta agcaaggcgt ttgaaatgaa ggatattggc cctgttaaaa      3240
     actgtttggg tattgaattt gatcaaaact tgcaaaagcg tacagtttca atgtcacagc      3300
     aaaagtatat tgatatagtg ttgaagagat tcggaatggt tgattgcaaa cctgctgcaa      3360
     ctccaatcga ggcgaagtgc tcacttaaac gaccggaaca acccaacgaa aatgaaatgg      3420
     aaaggtatcc atataaaagt ttaattggca ctttaatgtt tatttcagtt atgactcgac      3480
     cagacatcgc cttacgcagt gaacttctta agtcagttca actcgagcta cgatgctaac      3540
     cactggaaag cagctaagcg agttcttcga tatctacacg gatcgaggaa cctgggatta      3600
     ctttttcaag gctcaggcga agatttgtat ggcgttgtcg acgcagactg gggcgcaaac      3660
     ttaaccgatc ggcgctcata ttcaggccag gcgtttatcc tagcaggtgc agctgtgagc      3720
     tgggaggcac gcaagcaaag gaccgtggca ctatccagca cggagtctga atatctggca      3780
     atgtctagcg cagccaagga agctgtgtat ttaaaggcac tcctcaatag tctaggctgg      3840
     acctgcgaga ccatcaagat ttttaacgac aaccaaagcg ctcagaggtt ggtcaaaggt      3900
     ttcggtttcc atccacgcac gaagcacata gacgtacgtc atcatttcat acaggatatg      3960
     cacaagagtg gtgacagcca gctgatgtca tgaccaaagg gcttagtagt ttaaagcatt      4020
     caaattgtat ttcttggcta ggcatcactt gtatcgatta atttatatat tgttactttg      4080
     agggcgcg                                                               4088
//
ID   Copia-13_DTa-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   02-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-13_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-218
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5638-5638 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 218 BP; 67 A; 44 C; 38 G; 69 T; 0 other;
     tgttgcaatt tggagtttta tttgcaaagt aacaagctgg tcacaccact cacactacta        60
     ctacttcgac attgtacttc accgtgaaaa gaagagacac ggcttattat aaaatatagt       120
     tataatttcc tatgaactta acgttcactc gtggtgttat tatttcggaa cggatctact       180
     gggggtaatt cacgcaagga attccacaca ttctcata                               218
//
ID   Copia-13_LH-I repbase;    DNA;    INV; 4162 BP.
XX
AC   ADOQ01005504;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_LH_;
KW   Copia-13_LH-LTR; Copia-13_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4162
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005504; Positions     408    4569.
XX
CC   Positions [1486-2019] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..2907
FT                 /product="Copia-13_LH-I_1p"
FT                 /translation="MASNESWSSINKLRRAENYHTWSMTMRAMLDLNGLEG
FT                 CIITGEGEVMDAEKQKKAKRRILLSIDESLYVHVENAKNAAQMWVTLENLF
FT                 RNTGATHKIGLIQKLINVRLENCESMPDYVSQITGAANKLNNIGLNIGDEL
FT                 VGAIMLAGLTDEFKPLAMGFEGSGIKTTPDAVKTKLMDNAYQKETHGAFFS
FT                 KSGFKGKKSKSIDSKPKCYKCGKRGHKANQCGKEFKINKIEKMISADGKPD
FT                 KRQNKDKKESNNAFSAVFLSKVMQNQNDWYIDSGASQHMTPNANWLHEVRP
FT                 TLVTEILAANNQRMAVTGSGKITLRVKNENVDVLHVPELSTNLLSVDQIVK
FT                 NKNTIIFNANGCSIIGKNGNCIVKVKSLGGVYKIPSDDAVCMLSTNNNAMT
FT                 WHRRLAHVNHGDLCKMRDGAVDGVKFIDGVEEVKQCEVCMQGKQARLPFKA
FT                 SGKRAKQILDLIHSDLCGPMETASIGGARYFLTFVDDFSRKVFVYFLRSKF
FT                 EVPKRFKEFKKLIETQTKCKVKSIRTDNETKYCNKEFDTFCSREGIQHQTS
FT                 NTYTPQQNDVAERMNRTIVERAKCMLFDAELDKNFWAEAVNMAAYVVNRCV
FT                 NSTLDGKTPEEMWTGIKTDVSNLKIFGSQVMVYVPKQKRSKWDPKSTKQIF
FT                 VGYDQGTKGYRCIDPFTKKLTLSRDVKFLENQQKLSTVMNIDEDFNSERDK
FT                 SSIKGDVQPSKDLYSDTEDDSFRSVTEEINTSDEDYEFEETPTLSNQLRRS
FT                 SRTPKPRNFEGFVTYLTMGNENDDPLTLKDAMDRYDSKKWRAAIDEELKSL
FT                 EENATWELVDLPCDRKAIKCKWIFKTKRNGDAEIARYKARLVAKEYSQNYG
FT                 VDYNETYSPVVRYTSIRYLIALAVKHNLKIDQMDAVTAFLQGDLSKEIYME
FT                 LTRRIEQ"
XX
SQ   Sequence 4162 BP; 1508 A; 692 C; 911 G; 1051 T; 0 other;
     ggttatgggc ccagagtaat atataaaaat agaagaagta cgtgagccgt gtggctctgg        60
     acgaacagcg ataataaatc taattcgtgt gtgtcacaaa aggatatcgt gttcaaatca       120
     ccgcgtcttt ctttttcttg attatcccgc acagcattgt aaaatttttt caagatggct       180
     tcaaatgaat cgtggtcgtc aataaataaa ctaagaagag ctgaaaatta tcacacttgg       240
     tctatgacca tgcgggcaat gcttgatcta aatggtctcg agggatgcat cattactggc       300
     gaaggcgaag tcatggatgc ggagaagcaa aaaaaggcca aaagaagaat cttgcttagc       360
     atcgatgaat cactgtatgt acatgttgag aatgccaaaa atgcagcaca aatgtgggta       420
     acacttgaga atttgtttcg aaatactgga gctacacata aaatcggatt aatacaaaaa       480
     ctgattaacg ttcgtttaga aaactgtgaa tcaatgcccg attatgtaag tcaaattaca       540
     ggtgctgcga ataaactgaa caatataggt ctcaacatcg gtgacgaatt ggttggtgca       600
     attatgctgg cgggtcttac agacgaattt aaaccgttgg cgatgggttt tgaaggtagt       660
     ggaataaaaa ctacgcctga tgctgtgaaa acaaaactca tggacaatgc ataccaaaag       720
     gaaacccatg gagcattttt tagtaaaagc gggttcaaag gcaagaaatc aaagagcatc       780
     gatagcaagc caaaatgcta taaatgtggc aaaagaggtc acaaggcgaa tcagtgtggt       840
     aaagaattca agatcaataa aatcgaaaag atgatcagcg ctgatggcaa accagacaaa       900
     agacaaaata aggacaaaaa ggaaagtaat aacgcattta gtgcagtgtt cttgtctaaa       960
     gtaatgcaaa atcagaacga ttggtatatt gatagtggag cgtctcaaca tatgacacct      1020
     aatgcgaatt ggctacatga agtaagacca acattggtga cggaaatctt ggcagctaat      1080
     aaccaaagaa tggctgtgac cggctctgga aaaatcacct taagggtaaa aaatgagaac      1140
     gtggatgttc tgcatgtacc ggagttatca acaaatttac tctctgtcga ccaaatagta      1200
     aagaataaaa acacgataat atttaatgct aatggatgct caatcatagg caagaatgga      1260
     aactgcatcg taaaagtaaa atcattgggt ggagtttata aaattccaag cgacgacgca      1320
     gtctgtatgc tttcaaccaa taataatgca atgacatggc atagacgact agcacatgta      1380
     aaccatggcg atttatgcaa gatgcgagac ggcgcggtag atggtgtaaa attcatcgat      1440
     ggtgttgaag aggtaaaaca atgtgaagtt tgcatgcaag gcaaacaagc cagacttcca      1500
     tttaaagcat ccggaaaacg agcgaagcag atattggact taatccattc agacctatgc      1560
     ggaccaatgg aaactgcctc aataggagga gccaggtatt ttttaacatt tgtcgatgat      1620
     ttctcacgaa aagtctttgt ttatttttta agatccaagt ttgaagtacc gaagcgattc      1680
     aaggaattca aaaaactaat tgagacacaa accaaatgca aggtgaaatc tattagaacg      1740
     gacaatgaaa cgaaatactg taacaaggaa tttgacacat tttgcagtag agagggaatt      1800
     caacaccaaa cttcaaatac atacactcct cagcaaaatg acgttgcgga acggatgaac      1860
     cgtacgattg tggagcgagc caaatgcatg ctttttgacg ctgaactcga taaaaatttt      1920
     tgggctgaag cagtcaacat ggcggcgtat gtggtaaaca gatgtgttaa ttcgactctg      1980
     gatggcaaaa caccggaaga aatgtggaca ggaattaaga ctgacgtaag taatttgaaa      2040
     atttttggct cacaagtaat ggtttatgtt ccaaaacaaa agcgttccaa atgggatcca      2100
     aaatcgacaa aacagatatt tgttggctat gatcaaggta ccaaaggtta tcgatgtatt      2160
     gatccattca cgaagaaact taccttaagt agggatgtta aattcttgga aaaccaacaa      2220
     aaattatcaa cggttatgaa tatagatgaa gattttaatt cagagaggga taaatcatca      2280
     ataaaagggg atgttcaacc atcgaaagat ctatacagtg atacggaaga cgattctttc      2340
     agatcagtca ctgaggaaat taatacaagt gacgaagatt atgagttcga agaaacgccg      2400
     acgctatcaa atcaactaag aagatcgtct cgcacaccaa aaccaagaaa ctttgaaggg      2460
     tttgttacct acctaactat gggtaatgaa aacgatgatc cgttaacact caaggatgca      2520
     atggacagat atgatagtaa aaaatggaga gcggcgattg atgaagagct gaagtcactt      2580
     gaagaaaacg ctacttggga actcgtcgac ttgccatgtg acagaaaggc cataaaatgc      2640
     aagtggatct tcaagacaaa acgcaatgga gatgcagaaa tagcacgtta taaagcgagg      2700
     ttagtagcta aagaatactc gcaaaattat ggtgtagact acaatgaaac ctattcacca      2760
     gtcgtaagat atacgtcaat tagatacttg atagccctgg cagtcaaaca taacttgaag      2820
     atagatcaaa tggatgccgt gacagctttc ctgcaaggtg atttatctaa agagatatac      2880
     atggagctaa ccagaaggat tgaacaatga acaaagcaaa gtatgtcgat taaaaaaggc      2940
     catttatggc ttgaaacaaa gcagcagaga atggaataaa aagctcaaga ataagttaaa      3000
     aaacttcgga cttattcaat ctcgtgcaga tccatgtgta ttttacaatc agaatgcatc      3060
     attgataata gccatttatg tggatgattt cttgattttt tgggcaaatg ctaaagtaaa      3120
     ggatcagctg aagaaatctc tcagtgaagc atttaaaatg aaagatatgg gaaaggcaag      3180
     caattgcatt ggattaagta ttacgtatga atctgatgct atttgtctgg atcaagcaag      3240
     atatacgaaa cagatactta aaaatttaac atgatcaatt gtaaacctgc ggcgactcca      3300
     agcgacccga atcagaaact atcaactgaa atgagtccaa aaactgaaga taaaaaacaa      3360
     gaacttgagg gagtacctta tcaagaggcg gttggaagcc ttctatatct ggcacagggc      3420
     acacgccctg acatcgcttt tgctgttaac aatgtaagcc gtttcaactc caatttcggc      3480
     aagagtcact ggacggcagt taaacgcatc tttagatact taaagggcac tagggagatt      3540
     aaggtacgtt attctaagtc agataatgat gatttagtcg gtttttcaga tgcagattgg      3600
     gcgtcggatg tagacaagcg ccgttcctgt actgggtaca ttttcctgat gtgtaaagga      3660
     gcaatatcat ggatgagcaa gcggcaacag atagtcgttc tatcaagcac agaggctgaa      3720
     tatatggcct tgtcggccac aattcaggag gcattatggc ttaaaagctt cagtgaggga      3780
     ctggagttaa atagtaaaac taatgcaata aaaatcaaat gtgacaacca aagcgcctta      3840
     ggacttgcca agacagatgg ttttagagcg agatccaagc atatagacgt ccgccatcat      3900
     tacattcgtg agaaagtagc aaatggaatc attgacttga catacattct actaaagaaa      3960
     tggtagcaga taatttgact aaagcagtaa atggaccgaa acatgcatca tgtgcactca      4020
     aagctggatt ggtgcattaa aacttagaaa ttaaacttgc gaaactataa gagttatttt      4080
     atttgctata catatataaa tatatagaag tttttttttg tttgttactg taaagcaatt      4140
     tctaatattt aatgagtgag gg                                               4162
//
ID   Copia-13_LH-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   ADOQ01005504;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_LH_;
KW   Copia-13_LH-I; Copia-13_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-163
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005504; Positions     245     407.
XX
SQ   Sequence 163 BP; 42 A; 35 C; 27 G; 59 T; 0 other;
     tgttgtaaga aaatactgtt ctttcttttg aactgcgcgc catgctgcac ttaataagat        60
     gttcttttgt acctacgaaa tgatacaaat aaatcactct cttctggatt gtcttttgtc       120
     gagtaaagac gtgtctcgct tcttatccta actgcgctca aca                         163
//
ID   Copia-13_LMi-I repbase;    DNA;    INV; 4115 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 19.11, Created)
DT   23-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4115
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3097-3097 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(129..992,979..1470,1452..1700,1673..2044,
FT                 2007..2249,2283..2399,2383..3225,3222..4076)
FT                 /product="Copia-13_LMi-I_1p"
FT                 /translation="MATNADYKVSIDKLEGTDDWAKWKWHICMVLRSYELE
FT                 DIISGKRERVVLPQDPTSAQKLAYAEWKKDDAKAASLIASALSKSVSELVL
FT                 TCCNAKDIWEKLCARFERSSTQRLNMLIETFFQVKRDETEDISTHIAKLQK
FT                 LFVDLNDELTKHEENTLSERILNGRILSTLGKEYDNFKDLWDTIPSKNQSL
FT                 NLLIEKLCAIEMREQSTTETTALIATRKRQQNSRMKASKEQAKQKFPCNIC
FT                 KQLGHWAAECPQKIRDCNHMCEKEKVSGNSVFTSCVWVRLLLTTFYKLHST
FT                 NKWYCDSGATKHITPNKLHFVSYSEFNAPEMISLGKQGTNMFAFGEGTVYI
FT                 EIRRNNKWYSSRMENVLYVPDASANLFSARAAACNGYNIIFDYNSVVIQEK
FT                 ASGDVVMTGHVENGLYVLNMRVVRPERSNQMILMTPSQTLQVYHERFGHQN
FT                 KQHVRISATRQNILKKLDINVADSKDEFCDGCALGKMHRLPFKQRVQRSTV
FT                 TGNLIHADVNGPMSTQSFGGALYYVCFTDDFSKFAEFSLFQQICRIFFMKH
FT                 KNEVCETLKQFLSEAQTNGHVVKQFRCDGGTEFNNRKVKELLIEKGIELLI
FT                 PPPYTPEQNGVAERGNRTIVEAARSMLNVSNLPRGLWAEACNTAVYILNRR
FT                 KIFSARQSPIIVGKSSVPDKAPYERPTGNLTTSESWHSCYVHINKCFRSKF
FT                 DARLFLDSLLVMSIKDGFRIWIPSKRKVIMSHDVKFKGLCTVRLVPEAQEG
FT                 KCYRQSASRGSQSEKSLTFLNLRKSNIMGSQISCDDHKESTEFLKAKTTEF
FT                 SPEEKLENRRQRRKPGWMESGEFLMLTKVGTEEHQDPNCFSEVLQSNEKDK
FT                 WLQAINEEIESLKKNDTWVLVGRPTNVKVLQNRWVLRRKVAADGSTRFKAR
FT                 LVAKGYIQQAGIDYEDTFSPVARYDTIRTLLALASSKKMLVKQFDVKTAFL
FT                 NGILEDEVYMEQPEGFEDNTDRVCLLKRSLYGLKQAPRCWNKRFVEVMKKA
FT                 NFQNSAADPCLFYRKYNGNSLYVAIYVDDGLIVGSDKEEITAFLNTLQHEF
FT                 DKQTIGTLDSFLGIKIKQNEDGAIMISQEKYTKQILERFRMAESNTIATPI
FT                 GREENNDQNEAISSSVPYREAVGCLMYLSTATRPDITFAVNKVARAMEKPT
FT                 TDDWNRVKRIFRYLKGTLHYGIIYDREDDLKIYSDADFAGDKRTRRSTTGI
FT                 VAKYAGGAISWTSRLQKVVATSTTEAEIISASEGAKELIWLHRLLSELVEM
FT                 PEQPPTLYIDNASALKLAKNPEYHRLSKHIEVRYFYVRERFLNGEILLEHI
FT                 DGKSQLADLLTKPLERTRFNLLRAEIGMLEVKQ"
XX
SQ   Sequence 4115 BP; 1428 A; 676 C; 897 G; 1113 T; 1 other;
     ggttatgggc ccaggccacg tcaaagtact attaatcaca gtttcagaag aaagttgagt        60
     caattcatta agtattcata gaagaatatt tgcgcaagtc gtaaagcaca ggaactstcc       120
     aaaagaacat ggctacaaat gccgattata aagtcagtat tgataaactt gaagggactg       180
     atgattgggc aaagtggaaa tggcatattt gtatggtgct ccgttcgtat gaacttgaag       240
     acattattag cggtaagcgc gagcgtgttg tattgccaca ggatccgaca agtgcacaaa       300
     aattagcgta tgcagaatgg aaaaaagatg acgcgaaagc agcaagtctc atcgcaagtg       360
     cgctaagcaa atcagtttct gaacttgtgc tgacgtgttg caatgctaaa gatatatggg       420
     aaaaactttg tgcgcgattt gaacgtagca gcacacaacg tttaaacatg ttaattgaaa       480
     cttttttcca agtcaagcgg gatgaaacgg aagatattag cacacacata gctaagttac       540
     aaaagttatt tgtagatcta aatgatgaat taacgaaaca tgaagagaat acattgtctg       600
     aaagaatatt aaatgggaga attttatcta cgctgggaaa agagtatgat aattttaaag       660
     atctctggga cacaatacca tcgaaaaacc agagtttgaa tttacttatc gaaaaacttt       720
     gcgctatcga aatgcgtgaa caaagtacta cagaaacaac tgcacttatc gccacgcgca       780
     aaagacaaca aaacagtcgt atgaaggcgt caaaagaaca agcaaaacaa aaatttccgt       840
     gtaacatatg taaacagctt ggtcactggg cagctgagtg tccacagaag attcgtgact       900
     gcaatcacat gtgtgaaaag gagaaggtga gtggaaattc tgtatttact tcatgtgtct       960
     gggtgcgtct attgctaact acattctaca aataaatggt actgtgatag tggcgctaca      1020
     aagcatatca ctccgaataa actgcatttt gtttcatata gtgaatttaa tgctcctgaa      1080
     atgatttcac tgggtaagca aggtactaat atgttcgcat ttggtgaagg aacagtttat      1140
     atcgaaatta ggcgaaacaa taaatggtac agttctagaa tggaaaatgt tttgtatgtg      1200
     cctgatgcaa gtgctaattt gttctcagcc agggcagctg catgtaatgg atacaatata      1260
     atatttgatt ataatagtgt tgtgattcag gaaaaagcca gtggcgacgt tgtcatgaca      1320
     ggtcatgttg aaaatgggct ctatgtatta aatatgcgtg ttgtcaggcc agagaggagc      1380
     aatcaaatga tcttaatgac accctctcaa acactgcaag tgtaccacga gagattcggt      1440
     caccaaaata agcaacacgt cagaatatct tgaagaagct tgacatcaat gtagcagaca      1500
     gcaaggatga attttgtgat ggttgtgcat taggaaagat gcatagacta ccatttaaac      1560
     aacgagtaca acgctctaca gttacaggca atttaattca tgccgatgtg aatggaccaa      1620
     tgagtacaca gtcctttgga ggtgcattgt attatgtatg ttttacagat gatttcagca      1680
     aatttgccga attttcttta tgaaacacaa aaatgaagtg tgtgagacgc tcaaacaatt      1740
     tttaagtgaa gctcaaacca atggacatgt agttaaacaa tttagatgtg acggaggcac      1800
     agaatttaat aacaggaagg ttaaggaact gctcatagag aagggaatag aattactgat      1860
     tcctccaccc tatacccctg aacaaaatgg tgtagccgaa cgtggaaaca gaacaattgt      1920
     tgaagctgca cgttcgatgc tgaatgtaag taacctacca agaggattat gggcagaagc      1980
     ttgcaatacg gcagtttata tcttaaatcg tcggaaaatc ttcagtgcca gacaaagccc      2040
     catatgagcg gccaacagga aacttgacta cctcagaatc ttggcacagt tgctatgttc      2100
     atataaataa atgttttcgt tcaaagtttg atgcaaggct gtttttggac agcttgttgg      2160
     ttatgtcaat caaagatgga tttagaattt ggattccctc aaaacgaaaa gtgatcatga      2220
     gtcatgatgt aaaatttaag ggattatgtt gaatctgata tttcagaatt tccaggtctt      2280
     aaacagttag actggtgcct gaagcacaag aaggcaaatg ttacaggcag tcagcttcta      2340
     gaggaagtca aagtgagaaa agcttgacat tcttgaatct gaggaagtca aatatcatgt      2400
     gacgatcaca aggaatcaac agaattcctg aaagcaaaaa ctactgaatt ttctcctgaa      2460
     gaaaaattgg agaacagaag acaacgaaga aaaccaggct ggatggaaag tggtgagttc      2520
     ttgatgttaa ctaaagttgg tactgaagaa catcaagatc caaactgttt ctctgaagta      2580
     ttgcagtcca atgagaagga taaatggctg caagctatta atgaagaaat tgagtcactc      2640
     aagaaaaatg acacgtgggt gttagttgga cgccccacaa atgtcaaagt attacagaat      2700
     cgctgggttc tgcgtcgaaa agttgcagct gatggaagta ctcgcttcaa agccagatta      2760
     gttgctaaag ggtatattca gcaagcagga attgattatg aagatacatt tagtccggtt      2820
     gcacgttatg acactattcg gactttgcta gcactagctt cttcaaagaa gatgctggta      2880
     aaacaatttg atgtaaaaac tgcctttttg aatggaatac ttgaagatga agtatatatg      2940
     gaacaaccag aaggttttga agacaacaca gatcgggtat gtcttttgaa acgaagcctt      3000
     tatggactca agcaagcacc acgctgctgg aacaaacgct ttgtggaagt catgaagaaa      3060
     gcaaatttcc aaaacagtgc cgcagatcct tgtctgtttt atcgcaaata caatgggaat      3120
     agcctttatg tggcaattta tgttgacgat ggccttattg ttggcagtga caaggaagaa      3180
     attacagctt tcctgaacac tttacaacat gagtttgata aacaataggt acccttgaca      3240
     gtttccttgg tataaaaata aaacaaaatg aagatggggc aattatgata agtcaagaaa      3300
     aatacacaaa acaaatatta gaaagattta gaatggcaga atccaatacg attgcaactc      3360
     ccattggacg tgaagaaaat aatgaccaaa atgaagcaat ttcatcgtct gtcccatatc      3420
     gtgaggcagt cgggtgtctc atgtatcttt caacagcaac tcgacctgac ataacttttg      3480
     cagtgaataa agttgctcga gctatggaaa agccaacaac agatgactgg aatagagtaa      3540
     aacgtatatt ccgttacttg aaaggcacat tacattatgg tattatttat gacagagaag      3600
     atgatttgaa aatttatagt gatgctgatt tcgcaggtga caagagaaca aggcgttcaa      3660
     caactggaat tgtagcaaaa tatgctggtg gggcaatatc atggacaagt cgtttacaaa      3720
     aagtagtggc cacatctaca actgaagcag aaataatttc tgcaagtgaa ggtgccaaag      3780
     aattaatttg gttgcatcgc ttactaagtg aattagttga aatgccagaa caacctccaa      3840
     cactttatat tgacaatgcc agtgctttaa aattagcaaa aaatcctgag tatcatagac      3900
     tgtcaaaaca tatagaggtc cgatatttct atgttcgtga aagatttctg aatggtgaaa      3960
     ttcttttgga acatatagat gggaagagcc aattggctga tcttttgaca aagccacttg      4020
     aacgcactag atttaatttg ctacgtgcag aaattgggat gctagaagtc aaacagtaac      4080
     tgtttatttt cttgattttt cttttttgga ggaag                                 4115
//
ID   Copia-13_LMi-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 19.11, Created)
DT   23-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-13_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-194
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3098-3098 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 194 BP; 67 A; 17 C; 29 G; 81 T; 0 other;
     tgttattaaa aaaagaaaaa tgttttatgt ataatattag cttaatgtgt tgttctgtgg        60
     tagttttatg aaacttctgt gcctattata aaaactcttt tgtagttagt tatgtgtcaa       120
     gaaaactatt agttaaaata tatatcttac gcaattgaaa ctgtgttggt cgaactttat       180
     tataattatt aaca                                                         194
//
ID   Copia-13_SI-I repbase;    DNA;    INV; 4043 BP.
XX
AC   AEAQ01018600;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_SI_;
KW   Copia-13_SI-LTR; Copia-13_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4043
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018600; Positions    4417     375.
XX
CC   Positions [1432-1965] - Integrase core
CC   'GATTT' target site duplication
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..2475
FT                 /product="Copia-13_SI-I_1p"
FT                 /translation="MKKEQGQSMIEFVNGFVDKVEQLEDAGIKLPDELVSV
FT                 IMLNSLPIEYENFCVAIESRDNIPTIDFLKTKLIEEEARRIDQDDGKNQDP
FT                 ENNALVANNKGSKKNVKDTHTKYTKNKFNGKCYKCNKFGHKSTECKSKFKH
FT                 NTGNNTNDAMFACARHTGIQVSTQWCLDSGATSHMCHDGRKFSELDASKKC
FT                 DVYTATDDSVGSEGVGDVRMKVKLKDSETNDIKLKDTILVPRFRSNLLSVS
FT                 RMTDNGYTVMFKRNCAFVNRQDGSTALIAKRQGQLYVVDEAEQSRAQAAQD
FT                 AGNDSPLRWHQRFGHLNLADLKKLKSKEMVIGLSMKGESEELKCEICDKCK
FT                 IHQLPYKSSTKREKEVLGLVHSDICGPMRVPSLGGAKYFVTFIDDKSRYIE
FT                 VVMLKRRSDVVSAFKAYKKRAEKETGCQIKKIRTDNAKEYLSKEFNDFLEE
FT                 EGIKRQLSVEYCPQQNGVAERANRTLVEMARCMLLQSGVPNTLWGEAINAA
FT                 AYIRNRCPTKILENLTPIEAWSSEKPYVGYMRIFGSKVVALEKKPHRDKFK
FT                 PRGKEYILVGYSQESKAYRLWSPGTGTVVKRRDVRFTEDLRNKTEDTKEIL
FT                 ETSLNPDWHKLTSTQRTNGESNENSDNSEWEEENEEQFNTPEEEIDTPTTS
FT                 RRGPGRPKLLRTGKRGRPRKLYNETKQGEEASKSTGEEDDQA"
XX
SQ   Sequence 4043 BP; 1433 A; 694 C; 963 G; 953 T; 0 other;
     ggtgcgcgtg agataaggaa cacgtgagta attcaagtcc tgttttacga caaaatacta        60
     acctagaaag ctcatcatgt ctgtctctat cggcacgcaa aatatcgaga aattaaacga       120
     tactaactat gaatcgtgga aaattcaaat aaagagcgtg ctcgtatgta atgaactgtg       180
     gaaatacacg agtggatcgg aaactcgtac gcctgaaaac agcgttacgt ggacgtcgaa       240
     ggatgagaag gcattagcat taattctact gagcgtctcg aagaatcaac tgagtcacat       300
     taagaaggta gcaacgtcgc gagaagcatg ggaaaagctg agtagcatat atgaatccag       360
     aggcccggta aggaaatcag tcctgtataa gcaactgtat ctatgaagaa agaacaagga       420
     cagagcatga tagaattcgt aaatggcttc gtggataaag tagaacaatt ggaagatgct       480
     ggaatcaaat taccagacga gctggtatcg gtaattatgt taaattcatt accgattgaa       540
     tacgaaaatt tttgtgttgc tatcgaatcg cgagataata tacctacgat cgattttctc       600
     aagactaagc ttatcgaaga agaggcacga cgcatcgatc aagatgatgg caaaaatcaa       660
     gatccggaga acaacgcact ggtggcaaat aataagggct ctaagaagaa cgtaaaggac       720
     actcacacta aatacacgaa gaataaattt aacggaaagt gttacaaatg taacaagttt       780
     ggacacaaat cgacagagtg caagagcaaa ttcaagcata acaccggaaa taatacaaac       840
     gacgctatgt ttgcgtgtgc ccggcacacc ggaatccagg tatctacgca gtggtgtttg       900
     gatagtggcg cgacgagtca catgtgtcac gatggaagga aattctctga attagatgca       960
     agcaagaaat gtgacgtcta cacagccaca gatgactccg ttggatccga aggtgtcggc      1020
     gacgtaagaa tgaaagtgaa attaaaagac agtgaaacaa atgacattaa attaaaagac      1080
     acgatattag taccgcgatt tagaagcaat ctattgtccg tatctcgcat gactgataat      1140
     ggttatacgg tgatgtttaa aagaaattgc gcgttcgtga atagacaaga cggttctacg      1200
     gcgttaattg ctaagaggca aggtcagttg tatgttgtag atgaagctga acaatcgcga      1260
     gcccaggctg cacaagatgc cggaaacgat agccctctac ggtggcacca aaggtttggc      1320
     cacttgaatc tagcagattt aaagaaactg aagtctaaag aaatggtaat tggactgagc      1380
     atgaagggtg aatctgagga gcttaaatgt gagatctgcg ataaatgcaa gatccatcaa      1440
     cttccttata aaagctcgac taaacgagag aaagaagtac tcggtttggt gcactcagac      1500
     atttgtggtc ctatgagagt tccttcgcta ggcggagcta agtacttcgt aacctttata      1560
     gatgacaagt ccagatacat cgaggtcgtc atgttgaaaa ggcgttcgga tgtggtatca      1620
     gccttcaaag cctataagaa acgtgctgaa aaggaaaccg gttgtcaaat aaagaaaatt      1680
     cgtaccgaca acgccaaaga atatttatct aaagagttca acgatttctt ggaggaggaa      1740
     ggaatcaaga gacagctaag cgtcgaatac tgtcctcaac aaaatggagt tgccgaacgt      1800
     gctaatagga ccttggtaga aatggcacgc tgtatgttac tgcagtccgg agtccctaac      1860
     actttatggg gagaagctat caacgcggca gcctacatcc gtaataggtg ccccacgaaa      1920
     atattggaaa atttgacgcc catagaagct tggtcatccg aaaaaccata tgtaggatac      1980
     atgcgcattt ttggcagcaa agtcgtagcc ctcgagaaga aacctcacag agacaagttc      2040
     aagccgagag gtaaggaata tatattggtt ggttactcgc aggaatccaa ggcttacagg      2100
     ctgtggagcc ccggtacagg aaccgtagta aagagacgtg atgtaaggtt caccgaagat      2160
     ctaagaaaca agacagaaga cactaaagaa atacttgaaa cgtcattgaa tcctgattgg      2220
     cacaaattaa cttctactca aaggacgaac ggagaaagca atgaaaattc tgacaactca      2280
     gagtgggaag aggaaaatga agaacagttt aatactccag aagaagagat tgacacgcca      2340
     acaacttcaa gaagaggtcc cggtcgacca aagctattaa ggactggaaa acgaggtaga      2400
     ccaaggaaat tatataatga gacgaaacaa ggagaagaag caagtaaatc aacaggcgaa      2460
     gaagacgatc aagcatgact agatgccaag caagatgaat acgactcatt gatgaagtac      2520
     aacacgtggg agctcgtacc acgacctaaa gcgaaaaagg tgctatctaa tcgatgggtg      2580
     tacaaaataa agaggaagca ggacgggtca atacttaaat ataaagcacg tctggtagtg      2640
     cgaggctgcg agcaaacgta tggtgttgat tacgaagaga tattcgcgcc tgtagcaagg      2700
     tatgagacca tccgtgcttt tctcgctgga tgcgttcagg aagagatgca tgtgcatcag      2760
     atggacgtcg tcaccgccta cgtacaaggc gatttagcgg acgagatcta tatggaacaa      2820
     cccggaggtt tcgaggctca agtgaggaag ataaggtctg tttgctaaag aggcctctct      2880
     acgggctgaa acaagcaggt cgatgttggt atggcaaatt ggacaattat ttaaaaagta      2940
     taaacatgat aaatagtgat atagatcctt gcgtttatgt aagtaaaagt agagatataa      3000
     taatcgtagt atacgtagat gatttgctta tcgcgtctaa aagtctttgt aaattgcaaa      3060
     aatttaaaga aactttacga agtaaatttc aaatgaatga tttgggtcct gtaaatgata      3120
     ttctcggaat aaatgtagaa agggatgggc ctaccggaaa aatgaggtta acgcaacgca      3180
     aatacatcat agagacgcta caaaaattta acatggaaaa ttgtaagcca atatcaacgc      3240
     cacttgagtc aagtcaaaaa ttaacgaaaa caatggattc gaacacggga gacatgaagc      3300
     acaagccata tagagaatta ataggtagct tgatatattt agctaacgcg acgcgtccgg      3360
     atttagcatt cgttgcaagc gcattaagtc gtttttgtac agatccgaaa gaggctcatt      3420
     ggaaactcgc gaaaagaaca cttcgatatt tacaatgtac tatagattac ggaattatat      3480
     atactaaaag tttaagaaaa tggtcgctta tgcagattca gattgggctg gcgacattga      3540
     agatcgcaag tcgtgtagtg gaaatgtaat tgtattagct aacggtccaa taagttggaa      3600
     gtcgaagaaa caaaaatctg tggcgctctc cacgatggag gccgaataca tgtcgctttc      3660
     cgaagtttgt aaagaaatag tatatttaag acgattgtta gaacacatag gatttaagtc      3720
     gtgtgtaaca ggtccaacgg aagtgtactg cgataatcaa agcgcgatag agctaaataa      3780
     aaatcacgta tttcatggtc gaagtaaaca cattgacatt agatatcata attcacgaga      3840
     aatgagagat aaaggtgaaa ttagtttaag ctatttacct acggataaaa tgttagcaga      3900
     cttgttgaca aagcctttag tcaaagcgaa acacgaagaa tgtgtgagat tattaggatt      3960
     aagacaatga tgtagttagg aggagtttgt tttcacaaat ctaaaatttt gtatgcattg      4020
     ttatgtggat actttaagac gaa                                              4043
//
ID   Copia-13_SI-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   AEAQ01018600;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-13_SI_;
KW   Copia-13_SI-I; Copia-13_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-301
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018600; Positions     374      74.
XX
SQ   Sequence 301 BP; 62 A; 85 C; 59 G; 95 T; 0 other;
     tgcattgata ggaggagtgt tagaaatatc aatgcgttct atgcgtgctt aatttcgatt        60
     ttaccgcgct ataatgtccc tatgctttcg ccccgacatg cgcgatgcgc agcgcttatc       120
     ccgcgcttct tccgctctgg ctggcgcttg ctctcttgct ttgcttcgct cgccacgcgt       180
     gcacgcactc acgttcctgt atcccatata tattattaaa ggagtttaac gtataaacaa       240
     ctgtgctttc ctgagtctct actcccacgc ctgatcgcta ctctaatagt aactaaatcc       300
     a                                                                       301
//
ID   Copia-140_AA-I repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.04, Created)
DT   11-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-140_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4284
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4284
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4284 BP; 1334 A; 833 C; 1047 G; 1070 T; 0 other;
     ggttataggc ccagattccg ctgaagcatg gagaatcgca ctcgtcgatc gctggcaccg        60
     ctgtttagcg gagaagaaaa atcgttcccg ttctggaagg tgcgcatgga gcaacatctt       120
     aagcaggacg atttgctaca tacactggta aacacggttg aggaggaaac tttcttccag       180
     ccggttgcaa acgctactgc ggcggacgaa acagcacgca agaagcagct ccagaatcga       240
     atcaagcaag aaaattttgc gctaaacgaa ttctggaacg cattgaatga cgagacgatg       300
     agccacgtga ttaactgcaa atcggtgaag gaggtaatgg aaaagctgca gcagatttat       360
     cagccaaaag gggaaatcgc tatggtcgga ctacggtcca aattatatct actcagcaac       420
     cgtcgattcc aaaatctgaa ggacctgttt gctgctcacc atgacattgt gcggcagctc       480
     gagaccatgg gagaggcggt ggagcacatg gagcaaatcc atacactcct ggtcgctatc       540
     ccagagcagt ttaaacatct gctgagcgca ctgtcagtgg ttcgcaaaca ggaactgcag       600
     ctgatgacac tggaacaaat caagcgcata ttcttggatg ctgatgaagc catgccaaag       660
     caggttgcac taccgcgaca gacagcgttt attggtcaga aagctcggaa aaaccacaca       720
     cagccgcaac actcagcatc acatagcaac aggaaacagg tggtgtgctt tgaatgtggc       780
     aagactggcc acaagcgtcg taattgtttc cagctgaaaa ggaagatacg tcaagagcag       840
     caaaattcaa ccgaagatct agcggcggcc gtttcgaatg tggctttgtt ggcacagatc       900
     aatgctcccg agatcgtcgc acccccggtg caagaagact gctccctgcc ttccccgccg       960
     gaaggtgatg gtgtagatgc agaattagtc gaggtcgatc gtcagaacgg tttcaaggtg      1020
     aggattccct tggaacgaat caacatggtg cgcgtgaaca aaatcattga ggacgataag      1080
     cagcgtgaca tcaaggttcg tgagatggcg ctgcacgaga tgcccgttac cttgccaatg      1140
     tatgtggact cgggtgctag tgcacatatg cttcgtgaga tgcggtattt cagccacttg      1200
     tgggacatgg taggtgatga acaatccatt tctatggcca acggtgataa actgaaatgt      1260
     aagcgaatgg gtaatgcggt attgagaagc aatgttaaca ataaacgttt ccgtttgaac      1320
     ctttacaact cctatttcat tcctgaacta cactgtaact taatatcggt atcaaaaatc      1380
     gaggaaactg gtaagaaggt tattttctgc aaagggaaag ttgaaatcga ggatgaatcg      1440
     gggcaagtga tagcaacagt caatggactt tatgccctgg atgtgagcct tgatgacact      1500
     tcaagtggta actgtgatta tgcaaatttg ggaaagattt caagtaatgt taatatctgg      1560
     cataaacggt ttgctcacct aggagaaaca aatatgaaac ggttgcttca gcatcatatg      1620
     gtggatggac tcgatattaa acttgaaagt gaggagcttg accctatcgt atgcaaaggt      1680
     tgcataatag gtaagcaatc acgtgaagcg tttaataagg gaggaaagat tcgctcaatg      1740
     aggccactag agttgattca caccgatgtg tgcggacaga tgactgaaga aacttacgac      1800
     gggtacagat attatgtctc cttcattgat gatttcactc atttcgtgat tgtttacctg      1860
     atcagaaata agagtgatgt gttccaaaag tttgtagagt atgaagcgtt ggttactgct      1920
     caattcaatt tgcgaatttc aaagttgagg tcggataatg gtggcgagta ttacggtaaa      1980
     gaattcatgg ccttttgcgc tgacaaagga atccagatga tacctaccgc accatatacc      2040
     cctcaacaga atggggtgag cgagcgtatg aatcgcaccc tgatggaaaa ggcagtaact      2100
     attctacaag aaggtggaat gccttataag ttgtggggag aggcggttta tgtctcggct      2160
     tatctaacaa acagaagtcc gactaaagca ttacccacat caaagacacc ttatgaaatg      2220
     tggtttaact gtaaaccaga agtgggaaaa ctaaaagtgt ttggttgtgt tgcttatgca      2280
     catatcaaca agggacatcg tagcaaactt gatggcaaga gcagaatgct ggccatggta      2340
     ggctatgctc cgaatggttt tcgtctatgg gatagtgacg agaacaaaat cgtcatctcg      2400
     agggacgtca ttttcgacga aggtaatttc tacttcaaaa acaaggataa accctctaac      2460
     gaagacttga ataaaaggct tgacaaacaa gacgatatct ttgagatagc tttactgaag      2520
     catcaaatgt gtcctgaggt tacagaaaca gagtctgtgg attcagagaa tggagaggag      2580
     gatgaagagg acattctcta tcattccctt ccttcagaga atgattctga gcatgacact      2640
     gaaaacaacg atgttgactt acaaatacgt caaagccaaa ggtgtcgtaa agcacctggt      2700
     tggcttcagg actacgaaac taatttcgac agtagtttct ttatgacgca caatcaaggg      2760
     gaagttccac aaagcattaa gcatctcatg caacgagatg actggccaaa atggaaggat      2820
     gcaatcaacg aagaaatgac ctctttattg gaaaaccaga cttggacttt ggtgagtgtc      2880
     gttccgaaag gaagacgacc tatcaattca atgtgggttt tctcgataaa agatgatgag      2940
     tcaaatcgat ataaagcgag gctagtggca aaaggttgct cgcagcgtcc aggcttggat      3000
     tatggtgaga cttttgctcc agtggccaag atgtgcacga tacgaacaat gctatccata      3060
     gctgttaaaa gaaatttact catacatcaa atggatgtta aaacagcttt cttgaatgga      3120
     ctgttacaag aagaagtcta catgagattg cctgcagata tggacggcaa cataaagacc      3180
     tgcagattaa ataaaagcat ctatggtctt aagcagtcca gcagagcatg gaatttgaga      3240
     ttcaatgaaa ttatcactga aatgggattt aagaaacttg attctgatac gtgtctgtat      3300
     gtatctgaaa gacgaggact gtacatcatt ctatatgtag atgatgttct catctttgga      3360
     aaagatatta aagaaattac gtgggtcaaa gacaatcttt ccaaacgatt caaaatgaag      3420
     gatttaaggg aagttcgtaa ctttcttggc ctagatatcc gacgtgatct ggaatcggga      3480
     tggatgatat tgtcccaaga acggtatatt tcaaagatcc tagataaatt caggatgcca      3540
     gattgcaatc ctgtttccac gccgatcgat gctggaacga aatggaagaa accaagtgga      3600
     caacagacta gcgctccttt taaggccttg ctgggttgtc ttcaatattt aacattaatg      3660
     agcagaccgg acattacgtt tgcggtcagt ctttttagtc gttttcagag taaccctgat      3720
     gacgcccact ggaccggact taagcgaatt ctaagatatt tgaaaggaac ccgcaaccta      3780
     tgcctggttt atcgaaggat ggacaccgag gcaccactgg cgggatacgc ggacgccgac      3840
     ttcgccaatg acgaggagga cagacgatcg gtatctggaa atgcctttac cgtgtacggc      3900
     aacctcgtgt cgtggagcac aaagcgacaa caactggtca gtttatcatc aaccgaagca      3960
     gagctggtgt cactgtgcgc agcatccaag gaaggaattt ggttgtccaa aatgttgtgt      4020
     gaggttggaa ttctagcaac tccattcaca atgtttgaag acaatatacc gtgtatcaaa      4080
     attgcagaag agccccgcga tcatcaacgc actaaacata tcgatgtgaa atacatgttt      4140
     attcgtgaac aaattcaaaa caagaagatt aatttgaaat atgttccttc ggataatcag      4200
     ttagcagatg tttttactaa atctttggtt agaacgaaat tttcgaaaat gattcaattg      4260
     ttaggaatgg aaatttaggg gaag                                             4284
//
ID   Copia-140_AA-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.04, Created)
DT   11-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-140_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-399
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-399
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 583-583 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 399 BP; 124 A; 63 C; 89 G; 123 T; 0 other;
     tgttgatatg gaattataat gacaatttcc tccagtgtat attggtcagt gggagaatga        60
     gcgggagaat aataaagaga gagagagtgt gagattagca atcttagcaa tcgttctaac       120
     atacgcatca ctaacgctac aggtaggcta gagagtagga cgatcaaatc aaaccacaca       180
     ttttatctgt attgtatacc aatcaaaacg tgaatacaca agtgtaaagt aaatcttgta       240
     ttttatttcg tagtgtatag tcccgtgttg tggtgaggtg cactaagagt gagttttcac       300
     tgtagtcaca ttcccattcg tttatttcga gttgaaacgg taagttggta gtgtctgaga       360
     gggatttcct ctagacttta aactacactc tgctcaata                              399
//
ID   Copia-141_AA-I repbase;    DNA;    INV; 4283 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-141_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4283
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4283
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 632-632 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..4264
FT                 /product="Copia-141_AA-I_1p"
FT                 /translation="MTSNTARSSSAAGSSIVSSSLPAIDRLIGRENWATWK
FT                 FAMQTFLELEDLWCAVKPKKKEDGTYEAVDAAKDCKARSKIILSLEPTNYI
FT                 HVQKEKTARTVWSKLEEAFEDSGLTRRVGLLHKLIKTDLLSCGSMGEFVNQ
FT                 IISTAHQLNGIGFAISEEWIGTLLLAGLPDEYRPMIMALENSGIAITGDNI
FT                 KTKLLQEMNTFSSEAAFAAKKRYGNPGKNVKKSDPPKGPKCRKCSKYGHIA
FT                 KDCRSSKKENAFCAVLSTFSPMEDEDWYFDSGASVHMTRNSHLLKNVKPSS
FT                 GTVVAANGGNMKITATGSFTLKPSCNEDEIPVHDVQYLPDLSANLLSVNQI
FT                 VKKGHTVIFNNKGCKVLDRDGDVIATGSHRNDLFKLDERKQGKQSALVCSS
FT                 AGSLEVWHRRMGHLNINGVRSLANGLVTGVNIVGGSMTDCKVCPMGKHSRH
FT                 PFSKHGSRADGILDLVHSDICGPMEVKSLGGSRYFIVFVDDKSRRMWTYFL
FT                 KSKSETEVVQTFKDFHAMVERQSGQKLKMLRSDNGKEYVNAGFKKYLKQHG
FT                 IVHQTTNAYTPEQNGMAERANRSIVERARSMLHMAKLSKQFWAEAVATAVY
FT                 LLNRSPIKGHDVTPEEAWTGKKPDLGHVRIFGTCAMVFVPKQKRKKWDAKS
FT                 EECVLTGFDEETKGYRLYNLQSKKIIISREVKFINEGEAVPVREASPPKKI
FT                 ILLEQEEVVSLSPCEDDQNEAHSSDDEDDEFFTDVNNETSDDPDGITDGDD
FT                 ETSDGNENSLQEIYDVNDTVITVTPVLPPRQISYPPRSQVSRRSGREHKLP
FT                 GKYDDFVVKTKGLPSSLPSQQHTVSQSEIETTTGPKSQGQSNDAAITRSEA
FT                 CSSRTGPESQGQFGGIATSKSEARSSAAVEDPYTHQDALSRNDSERWKIAM
FT                 REEYQALMDNNTWTLTNLPEGRKAIKCKWVFKTKHDAAGNIDRYKARLVIK
FT                 GYSQRKGVDYDETYSPVVRHSSLRYLFALAAKHNLYVDQMDAVTAFLQGDL
FT                 EEEIYMEQPPCFEQPGEGPKVCHLNKALYGLKQSSRVWNAKLDAALKKLGM
FT                 KQSKYDPCLYYKINNGKILFIAIYVDDLMLFSNDEDWKNEIKAKLSCMFHM
FT                 KDLGPAKSCLGIRITRTEDGIALDQEGYVESVLARFKMQDSKATLTPMNAA
FT                 IKLTKDMSPQTKEEVEQMATVPYQEAVGCLMYLAQCTRPDILFAVNQLSRF
FT                 NTNPGPSHWQAVKHLMRYLRGTSAMKLQYSRAGNEEITGYSDADWAADADD
FT                 RKSTSGYMFLLQGGAVSWSCKRQSTVALSTCEAEYMALSAAVQEASWWQGL
FT                 LSQFGRKQPIDLYCDNQSTICIAKNGGYTPRTKHIDIRHHYIRDALDRKIV
FT                 NITYVSTDDQIADGLTKPLQRIKLERNRRAMGITQ"
XX
SQ   Sequence 4283 BP; 1233 A; 995 C; 1145 G; 910 T; 0 other;
     ggttatgggc cgttcgcatt attaattcga agcagaagtt gtgaaacgtt ttcccaatca        60
     agaatccaag atgacctcga ataccgccag atcctcaagc gctgctggta gtagcatagt       120
     ctcttcaagc cttcctgcaa tcgatcgttt gattggaaga gagaattggg cgacctggaa       180
     gttcgctatg caaacattcc tggaactcga agatctctgg tgcgctgtga agccgaagaa       240
     gaaggaagac ggaacctacg aagccgtgga tgcagccaag gattgcaaag caagatcgaa       300
     gatcatcctg tctcttgaac ctacgaatta tatccacgtt caaaaggaga agacggcgcg       360
     tacagtttgg tcgaagctgg aggaagcctt cgaggactcg ggtctaacca ggcgagtcgg       420
     gctactccat aaattaatca agactgatct cctgtcgtgc ggatccatgg gggaattcgt       480
     taaccaaatt atatcgactg ctcatcaact caacgggatt ggatttgcca tttccgaaga       540
     gtggatcgga acgttgctgt tggctggctt gcccgatgag tatcgtccga tgataatggc       600
     cttggagaac tcgggcatag ccatcaccgg agacaacata aaaaccaagc tacttcaaga       660
     gatgaatacg ttctcaagcg aggcggcgtt tgctgctaag aagcgatatg gaaatccggg       720
     taagaatgtg aagaaatcgg atcctcccaa aggtccgaag tgccggaagt gttccaagta       780
     cggccatata gcaaaggact gtcgaagctc caagaaggag aatgcgttct gtgcggtgct       840
     gtctacattc agtccgatgg aagatgaaga ttggtacttc gattcggggg cgagtgtcca       900
     tatgactcgt aacagccatc ttctgaagaa cgtgaaacct tcaagtggca ctgtggtggc       960
     agctaacggt ggtaatatga agattactgc gactggatcg tttacgctga agccatcctg      1020
     caacgaagac gagattcctg ttcacgacgt gcagtatttg ccagacctat ctgcgaatct      1080
     tctgtcggtc aaccagatcg tgaagaaggg ccacaccgtt atcttcaaca ataaaggatg      1140
     taaggtgctc gaccgggacg gcgatgtgat cgctactgga agccatcgaa acgatttgtt      1200
     caagcttgat gaacggaagc aaggtaagca aagtgctctg gtttgttctt cggcaggaag      1260
     tctggaagtt tggcatcgac ggatgggtca cctcaacatc aacggcgtgc gcagcctagc      1320
     caacggacta gtgactggtg tcaatatcgt tggaggaagc atgacggact gcaaggtgtg      1380
     tccgatgggt aaacacagtc gacatccgtt tagcaagcat ggatcccgtg ctgatggtat      1440
     actcgatctg gtgcattcgg acatctgtgg accgatggag gtgaagtcgc ttggaggaag      1500
     ccgctatttc atcgtgttcg tcgacgacaa gtcacgcagg atgtggacgt atttcttgaa      1560
     atcgaagtcg gaaactgagg tcgttcaaac tttcaaggat ttccacgcta tggtggaacg      1620
     acaatctgga caaaagctga aaatgctcag atcagacaac ggtaaagaat acgtcaacgc      1680
     tggattcaag aagtacttga agcaacatgg aattgttcac cagacgacga atgcttatac      1740
     cccggaacaa aacggcatgg cagagcgtgc caacagatca atcgtggagc gtgctaggtc      1800
     catgctgcat atggcgaaac tttcgaagca attttgggcg gaagctgtgg caaccgctgt      1860
     atatttgctg aatcgttccc cgatcaaagg tcatgatgtc accccggaag aagcttggac      1920
     cggtaagaag cctgacttgg gtcacgttcg gatcttcgga acatgtgcga tggtcttcgt      1980
     tccgaaacag aagcgcaaga agtgggacgc caaatctgag gagtgcgtcc tgaccggctt      2040
     cgacgaagaa acaaaagggt atcgattgta caaccttcag tccaagaaga ttatcatcag      2100
     tcgtgaagtt aaattcatca acgaaggtga agctgttcct gtccgagaag cgtctcctcc      2160
     gaagaagatc attctcctag agcaagaaga ggtcgtatcc ctatcaccat gcgaagatga      2220
     ccagaatgaa gctcactcaa gtgacgatga agacgacgaa ttcttcactg atgtcaacaa      2280
     tgaaacttcc gatgacccag atggcattac cgatggcgac gatgaaacat ccgatggtaa      2340
     tgaaaatagc ctgcaagaaa tctatgatgt caatgatact gtgatcaccg tgactcctgt      2400
     gctcccaccg cgacaaatct catatccacc taggtcacag gtgtcgaggc gcagtggtcg      2460
     ggagcacaag ttgccaggca agtatgacga ttttgtagta aagacaaaag gtcttcccag      2520
     ttcccttcct tctcagcaac acaccgtcag ccagagcgaa attgaaacca ccacggggcc      2580
     caagagtcag ggtcagtcta acgatgccgc gattactcga agcgaggcct gcagttcacg      2640
     tacgggaccc gagagccagg gtcagttcgg cgggatcgca acatccaaat ccgaggccag      2700
     gagttcagct gcagtggaag atccgtacac tcaccaggat gcactgtcgc gtaacgactc      2760
     cgaacgctgg aaaatagcga tgcgagaaga gtaccaggca ctgatggaca acaacacatg      2820
     gacgctgacg aacctccccg aaggaagaaa ggcgatcaaa tgcaagtggg tgttcaagac      2880
     aaagcacgac gctgctggaa acatcgaccg ctacaaggcg cggctagtca tcaagggcta      2940
     ctctcagcga aagggggtgg actacgacga gacctactcg ccagtggttc gtcacagttc      3000
     gcttcggtac ttgttcgcgc ttgctgccaa acacaatctc tacgtcgacc agatggacgc      3060
     cgtcaccgct tttctccaag gtgacctgga agaggagata tatatggagc aacccccgtg      3120
     cttcgaacaa cctggcgagg gaccaaaggt gtgccatttg aacaaagctc tgtatgggct      3180
     gaaacagtca agtcgcgtat ggaacgcaaa actggatgca gcactcaaga agttgggtat      3240
     gaagcaatcg aagtacgatc cgtgcttgta ctacaagatc aacaacggaa agattctgtt      3300
     tatcgcaatc tacgtggacg atctgatgct gttttcgaac gatgaagact ggaagaacga      3360
     aatcaaggca aagctgagct gcatgtttca catgaaggac ctcggaccag caaaaagttg      3420
     cttggggatc cgaatcacac gcacggagga tggcatagct ctcgatcaag aaggatatgt      3480
     cgaatcagtc ttagcccggt tcaagatgca agattcgaag gccactctga caccgatgaa      3540
     tgcagccatc aagctgacca aggatatgtc accgcaaacc aaggaagaag tcgagcaaat      3600
     ggcaacggta ccatatcaag aagctgttgg gtgcctgatg taccttgccc aatgcactag      3660
     accagatatc ttgtttgccg tcaaccaatt gagcagattc aacaccaacc ccggaccgag      3720
     tcactggcag gccgtcaaac atctgatgcg gtacctcaga gggacgtcgg caatgaagct      3780
     tcagtactcc agagccggaa acgaggagat cacgggatat tctgatgctg attgggccgc      3840
     tgacgcagat gaccggaaat caacgagtgg gtacatgttc ctactacaag gaggagcggt      3900
     atcctggagc tgcaagaggc aatcaaccgt ggcgttgtct acctgcgaag cagagtacat      3960
     ggcgttgtcc gcagcagtac aagaggcttc gtggtggcaa ggactgctat cacagttcgg      4020
     aaggaaacaa ccgatcgatt tgtactgcga taatcaaagc actatctgta ttgctaagaa      4080
     tggcggatat acaccaagaa cgaagcatat agatatacga catcactata ttcgagacgc      4140
     tttggatcgg aagatagtga acatcacgta cgttagcaca gacgaccaaa tagctgacgg      4200
     gctcacgaaa ccactacaac gtattaagct ggagcggaat cgacgagcca tgggaatcac      4260
     acaataattg gcttaaggag gag                                              4283
//
ID   Copia-141_AA-LTR repbase;    DNA;    INV; 123 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-141_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-123
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-123
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 603-603 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 123 BP; 35 A; 24 C; 19 G; 45 T; 0 other;
     tgttgtgaaa ccatttgtag taagccatga tttatgtgac gttagactta gaaaaataaa        60
     tttccttatt cttgttccaa cctttacacg agcaagtcgt ttatttctgc gctactccca       120
     ata                                                                     123
//
ID   Copia-142_AA-I repbase;    DNA;    INV; 4160 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-142_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4160
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4160
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 600-600 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4160 BP; 1107 A; 1005 C; 1166 G; 881 T; 1 other;
     ggttatgggc agaccacgct agtaaccatc gcgaccgatc aacaagtgaa aattttttca        60
     agctcatttt cattcttcaa gtttttcaag acaaaatgga gcgaattgga atttccaagc       120
     ttaacggaag caactacgga acctggaaga caaaggttga attcctgttg gttcgagacg       180
     atctgtggcg gtacgtgatc gggacaagtc cggcggcaag tgccggggct tccggattgg       240
     gcgctacagc agctgaagtt gaagcctgga acaccggcga ccagaaggcg cgtgccacga       300
     ttgggctact tctggaagac agccaattga atctcatcaa gacctcaacc acggcgaaac       360
     aaacttggga cgcgctacgg ggccactatg agaaggccac gttgacctca aaagtctcat       420
     tgctgaagca aatctgcgac aaacggtata ctgatggcga ggacatcgag cggcacgtat       480
     tcgagatgga agaactcttc gagcggctgt cggtggcagg ccaggtattg gaccgaaatc       540
     tgcaggtggc aatggtgcta cgaagcttgc ccgagtcctt caacaccctc acgacggcgt       600
     tggagaccag gccggacaac gagttgacca tcgagcttat caagtcgaag ctgacggatg       660
     aggtggccaa gcgaggaagt agaagttgcg gcgaatccgt gctcaaggct gacgtcaaga       720
     aacagaagaa aacggtaatt tgcaactatt gccaaaaacc gggccacaaa cagaggcact       780
     gccgtgctat gatggagaaa cgcaacgaag aagccaagtc kaacgagcgg caggagaagc       840
     gctaccaccc caaggtcaag gcggcccgtg aaggtttcaa ggaccattca acgcaggatt       900
     tttcgttctt ggctttgcag caggtgagtg gacgtgatgc gtggatcatc gactccggcg       960
     cgacatccca catgtgcgtc gatccgaaca gtttcgaaac attggacaga agcgtgaagc      1020
     aggaagttta tcttgcggac ggcaagaagg taaccacgga aggaattggt tcgtgtaagc      1080
     tgatctgggt atctccggag ggtgaacgca gcactgttct cctcacggac gtgatgtatg      1140
     tcccgcagtt cgagaccaat ctcatttcgg tgaagaaact tgctgccaag ggagccaagc      1200
     tcgtgttcga ttcggatggc tgccatattc tcaagaatga caaggtgatt ggagccacaa      1260
     ccacgtcagg cggactgtac aaattgcgga caatccatgc tgcactgcgg gtgagtgaga      1320
     ccaaacataa tccttcctgt ttgcattctt ggcaccgtat tcttggacat cgtgagccgg      1380
     atgcgattcg tgatctggag accaaagagt tggcgaccgg gattcacatc gaagattgtg      1440
     ggtgttacgt gacctgcgaa tgttgtctcg agggcaagct ggcacgtacg ccatttccaa      1500
     agaaatccaa gcggagatcc aagcagccgt tggatatcat ccatacggac gtgtgtggac      1560
     cgatgaagac gcggacgcca gggggttgtc gttactttct aacgatgatt gatgactact      1620
     cccgctacac cgtagtgtac tttctgaaaa agaaatcgga agttactgag cgaatcaagg      1680
     attatgtgca gctggtgaag aatatcttcc agaaaacgcc caaagtgatt cggtcggacc      1740
     aaggtggtga gtaccagaac gaagccctgg accgtttctg tcgtcaagaa ggtatcactc      1800
     agcagtttac cacagcgtac accccacaac aaaacggagt tgcggagcgt aaaaatcgat      1860
     cgctagtgga gatggcccgc tgtatgctgt tggacgcgca actgtcacac aagtactggg      1920
     ccgaagctgt gaatacggcc acatatttgc agaaccgttt gccaacgaag cccgtatcgc      1980
     aaacaccgtt cgagctctgg actggagaga agcctgatct cagccacctc aaggtttttg      2040
     gttcctgggc ttacgtttgg attccatctg agaaacgttc caagttggag gggaagtcca      2100
     agaagatgtt gtttgtcggc tactctctgc accataaggc ttaccgtttc atcgatcccg      2160
     agacgcacaa gctgatcacg agtagagatt gtcgctttct gacacatcag gaggttcggg      2220
     aaaccgaacc ttcgcaggga agtatcgttt catatccttt ttctgaaatt tctccgatga      2280
     accgtggcaa agctgatgat gttcccgctt ttacagcacc cgaggaggac gacgatgatg      2340
     ccacgcccgc cgagagcgac gatgaccagg atgacgacga atcaagtgaa tctgaattca      2400
     acggtttcga aactgctaca tccaacgacg aagatgacca agacgatacc atccgttttg      2460
     atgacgccgt cgtcgagcag aacctggccc aggctaccga gggacaggag gagtttggcg      2520
     atagaaccag tgtccgtcgc tccacccgtg ctaccaaagg gatcccacct cagcgattcc      2580
     ctgatgtagt cggtttgacc atccaggagt actccgagcc tcgttcgttc gaagaagcaa      2640
     tgaagggccc ggatcgtgac atgtggatgc gcgctatgga ggaggagatc cagtccttgc      2700
     acgagaatgc gacttgggag gtcgttccat tacccaacga tcgcaaacct gtaggctgca      2760
     agtgggtgtt taaacgaaag ctgggaagca acggcgagat cacccgatat aaggcaaggc      2820
     tcgtcgctca aggatttagc cagcgatatg gtacagatta cgacgaggtc tttgcccccg      2880
     tcgcgaagca gactacgttc cgtacactgc tgtcgattgc cgctaggagg aagctattgg      2940
     tgaagcatgt ggacgtaaaa tcggcctacc tatacgggga cctggccgag acgatctata      3000
     tgaggcagcc gattggtttt gagaccggaa cgaagagcga cgtgtgcctg ctacggaaaa      3060
     gcctgtatgg attaaagcaa gctggacgag tgtggaaccg caaaattact gaggtgctac      3120
     agagtttggg atatcaaccg tcggaagcag atccgtgtct cttcgtgcgg acgaagcatg      3180
     gtcatttatc attcgtacta ctttacgtgg acgacatgct cattgcttgc caggatgaag      3240
     cggagtacaa cagaattgaa gcaactctaa agaagaactt caagatcaca tcgctcgggg      3300
     acgttagcaa ctacctcggt attcgggtcc aacgaagaca ggatggacga ttcgtgctgg      3360
     atcaatcttc gtacatccgt acgattgctg caagatttgg acaagcagac gcaaaaccat      3420
     cccaaatccc aatggacccc ggttatccga agctacagca aaaggaggag gaatcattgc      3480
     cgcggaagga cgacttccag agcttagtgg gtgctttgct gtatgtcgcg gtaaacacgc      3540
     ggcccgatat tgctatcagc gcgtccatcc tggggcgcaa ggtcagtcat cctacccaag      3600
     ctgattggac ggaggccaaa cggacgttgc gatacctaaa atcgactgct gatttgaagc      3660
     tggagcttgg tggatccgga gaacttcaag catacgttga cgcggactgg gctggagacc      3720
     atcaagaccg gaagtcaaac tcgggattca tctttcacct aggtggaccg atttcctggg      3780
     ctgctcggaa acaacaatgc gttactcttt cgtccaccga ggcggaatac gtagcgttag      3840
     ccgaggcctg tcgggagcta ctctggttgc agaagctgat gaaggacgtt gttgagaagc      3900
     ccaccggacc ggtcatagtg cgcgaagaca accagagctg catagcgatg ctgcgagccg      3960
     aaggaggtag tcgcagaacc aagcatattg acacgcggtt caatttcatt cgggacctag      4020
     tgaccaacaa cgtcatcaag gttctctact gccctacgga gacaatggtc gctgacgctt      4080
     tgacaaaacc gttgccaaga gtaaaactcg agatctaccg aaggaaaatg ggacttcaat      4140
     cgttgcagct tgaggaggag                                                  4160
//
ID   Copia-142_AA-LTR repbase;    DNA;    INV; 134 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-142_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-134
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-134
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 604-604 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 134 BP; 48 A; 22 C; 25 G; 39 T; 0 other;
     tgaagacgta caagcaaccc aagattgaag cctataatta atcgtagtat gctgtttgta        60
     aaatagagta gaaaatatat cattagttgt cacacacttg aagagatcgg ttggttttac       120
     tgcaacctcc aata                                                         134
//
ID   Copia-143_AA-I repbase;    DNA;    INV; 4152 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-143_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4152
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4152
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4152 BP; 1145 A; 798 C; 1230 G; 979 T; 0 other;
     ggttttgggc ccaggatcga ttcctggacg cgtcgtggtc gaatctagtg gattccggtc        60
     gtagtgcagt gaaaaatcga gtgatggggg aacatgagaa ggaggagtgc tttcgcgtcg       120
     cgctgtttga cggcacgaac tttccggcgt ggaaatttcg tatgctcaca ctgctggatg       180
     agcacgatct agtggaatgt gtcgagaccg aaatagatga tgtgccggaa ttgaaagtcg       240
     aagcagggga cgcgcaagat gtgattcagc ggaaaggaaa agccctagag aagaggcaga       300
     agaaagaaaa gcggtgtaaa acgatgatag tgtcccggat ccatgatgat caattggaac       360
     atttgcaggg gcggaacacc ccaaagcaaa tgtgggattc tttagtgaaa atatttgagc       420
     ggaaaagtgt agcaaagcgg ttgcatttga atcggcaact acacgagctg cgatacgcgg       480
     gtggaagttt gcaagaacat tttgtgaagt tcgatcgttt gattcggctg tttcgtggtg       540
     ctggtggtgt gatggatgac attgacgttg tgtgtcggtt gctgctctcg ttgggcactg       600
     aatacgatgc agtggtgacg tcgattgaat cacagccaga agaacaactc actatggact       660
     ttgtgaagag caggctccta gatgaggaaa taaaaaggag aagcacagtg tcgaaatcga       720
     gcgcagtgaa aagtgactcc gccgcgtttt ctggtgtcgt gaagaagcaa gtgaagaaga       780
     agaatagttt caaatgcttc gggtgccaaa aggaggggca caaattagca aactgtcccg       840
     aaaagaagca caaaagtgat gtgaaatcgt ttcccaaatc gtctgcgcac gtcgcgagtg       900
     atcgaaaaga aggagtgatt ttcttgagcg caggcggacg tgcgagcgag acgaagttgg       960
     acgaacgaag caaaattcgg tggtacattg actcgggtgc gaccgaacat atttgtaacg      1020
     ataaacgact gttcgataaa ctggctccga tggcacagcc aatggacatt gctgttgcta      1080
     aaagtggtga atgggtgact gccgaactag ccggcaatgt gtcagtgatt tcagtggttg      1140
     aagataaatt catcgaggcg acggtgtccg atgtggtgtt tatcccagaa gcaagagcca      1200
     acctgttctc catcagtaag gtggaatctg caggaatgcg ggtggtgttt gaaggtggac      1260
     gcgtcgagat tctgcgagac tcggtggtgg tggccactgg aagacggcga gataagttgt      1320
     atgagttaaa cttctacaca cccaaaggta cgtgcgattc tctattattt tctggggaga      1380
     tcaataaggc gaatgagctc tggcatcggc gctttggaca cctgggagag agaaacctga      1440
     caatcctgtt gaacggagag gcggtcgacg gcatgaaagc tgtgcagggc gagaagcggc      1500
     tgattatctg tgaaacatgc gtggcggcga aacagacacg gaatcccttt gcgttgcggc      1560
     aggaaaggag atcgagtcga gtgttggagc tggtgcactc cgatgtttgt gggccagtca      1620
     caccagcaag ctggagtgga gcaaaatatt tcgttacctt tattgacgat tggtcgcgct      1680
     tcacagttgt gtatttgatc aaatcaaagg atgaggttgc cagttgcttt agagactacg      1740
     aggcgcaagc gactgctaag tttgggtgca aaatctctcg tcttcgcacg gataacggtg      1800
     gggaatatgt tggcaaagac atgcgtacgt tttgtcgaca gcagggaatc aagatggagt      1860
     tcaccgttcc ctactcacct gagcagaacg gagtaagcga acggatgaat cgaacgttag      1920
     tggagaaagc ccgttcgatg ttattcgact ccggtattag caaaatgttc tggggagaag      1980
     cggtggaaac tgcagcgttt ctagcgaaca ggagcccagc cagtgcgatt gggcagaagg      2040
     taacacctgc ggagatgtgg aatggtaaac gacccgtggt tacgaagttg agagttttcg      2100
     gttctccagc ctattgccat atcccgaagg aaacccgtaa gaagctagac gaaaagagct      2160
     ggaaaggtat ttttgttgga tatggagcaa acgggtatcg tatctggaat cccaaagaga      2220
     agcggattgt gaccgttcgc gatgttatca ttgatgaaaa tgctaaaatg gaagctagtg      2280
     agagcgaccg gccgaggaca acgatggttc acgtatccgg tgaatctaaa acgtacgaaa      2340
     gcgagcaaga agatcttcac agcgaagctg gtgatccaga tggtgatctg aacgagacaa      2400
     accctgaaga cggcactgag ccggaagatt tcgatagctg tgttgacacc acccttgagg      2460
     aggagagtgg cgatagtgat cgggctggag gcaatggtga ggaaataacg ggaacacgca      2520
     acaggaagcc tcctgtgtgg catcgggatt atgatatgac gtttgccggg tatgctttcg      2580
     gagcaatcga gtacgttgat aacataccaa gcactgtagc agagttaaag aagagggatg      2640
     actggccaca ttggcaggcg gccataaagg cggagttgga ttctttgcac cgaaatggga      2700
     cgtgggaact agtgaagctt cctgcgggac ggcgtgcagt gtcttgcaag tgggtattca      2760
     ggatcaagcc tggaaacgga gatgagccgg acaaatacaa agcgcgtctg gtggcccgtg      2820
     gctttagcca acgtcgtggt ttcgactaca ctgaaaccta ctctccagtc gctagagttg      2880
     acacactcag agctttgttg gctgtggcaa acaaagaacg catggagatt catcagatgg      2940
     atgttcaatc ggccttcctc aacggagatc tcacagagga aatctacatg tcacaacctg      3000
     aaggctttga agttggtaac gggttggtct gccgtttgaa aaagtctctt tacggcctaa      3060
     agcaggcctc aaaggtttgg aatgataggt ttgacagttt cattaccaaa ctcggattcg      3120
     taaggagtaa aaatgatccg tgtctctacg ttagagatca aagtggcaag aaagtgttct      3180
     tgttattata tgtcgatgac attttggtaa taggccacga tttgaagcag atcaagatca      3240
     taaagacttg tttgtccaag gagttcagaa tgacggattc aaatgaggtg tcttgttttc      3300
     tcggaatgaa tattgcaagg agcattgatc agcgaatcat gcgaataagc cagcgcagat      3360
     atttggagag ccttttggaa agattcaaca tgtccgagtg caagccgata tccgtcccga      3420
     tggagtgccg tctccgattg cagaaaggcg aagaatcgaa acgtacgtcc aagccgtatc      3480
     gagagttggt aggctgctta atgtatgtgg cacttacaac tcgtcctgac ttgtgtgctg      3540
     cagtcaatta ctgtagtcag tttcaaagct gtccaaccga cgagcattgg gctcatctaa      3600
     aacgcatatt gcgatacatc aagggcactt tgaacattgg attgcagttt gaagctaatg      3660
     atgcggcgcc tgtacttggt gcgttctgtg acgcagattg ggcgaataac gtagtcgacc      3720
     gacgctcagt tacaggatac gtcttcaagg tcttcggatg cactatcgct tggggaacga      3780
     gaaagcaaca gtcagtgtcg ttgtcatcga cggaggctga gctttttgcg ctgtctactg      3840
     ctgtgtgtga agggatgtgg cttcggcgat tgctagcaga acttggatac atcgcaaatg      3900
     cagctgttcc gtattatgaa gataaccaga gtacgatcag aattgtttgt gaaccgaagg      3960
     ctagaagcag gctgaagcat atagatgtta agcaccagtt cgtcagtgat ttggttcagc      4020
     aggggcagat tgagctgcgg tacgtgtcga cggatcaaca ggtagcggat ataatgacta      4080
     agagtcttcc cgcagggcag tttcgtcgac tcagagaaaa acttagtcta tcagacaaaa      4140
     attgagcagg gg                                                          4152
//
ID   Copia-143_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-143_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 605-605 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 216 BP; 59 A; 49 C; 34 G; 74 T; 0 other;
     tattgagagt gcaatttacg tccagtgtat gtaattttta ctattgatat gcccctcggt        60
     atccaggcaa tgctgccaac ctaaatgtca aatgtgtatt tccttttcct tttgcactgt       120
     tcattattag aagaaagtcc gatcaataaa cacgcgttgt taaagttcca agaactaaat       180
     cggcttttcc ctatccgaaa tctctttccg cccata                                 216
//
ID   Copia-144_AA-I repbase;    DNA;    INV; 4227 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-144_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 601-601 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4227 BP; 1146 A; 840 C; 1241 G; 1000 T; 0 other;
     ggttatgggc ccagcgctac gccctgccgg cgggaagttt ctttgaaacc gcgtgtgtgc        60
     gatcgtcaga agaaaacgtg tgcgaacgtg tttcgtcgga tcgaagtgaa gggattttgt       120
     tttttttttt tcggtcgagt gagagttttt ccacgatgga agtggacaga aaggtgtatc       180
     tgttcgacgg gagcaatttt gctaattgga gcttccggat ggaggtccat ttggaggagc       240
     tcgggcttct ctcgtgtatc gaacagccag cggaagatgt gccggaatat cgtgttgttg       300
     cgaccgacgc aattgaggtt aagttggaga aggaaaggtt gctggcggaa agaagagtga       360
     atgacgtgaa gtgcaaatcg gtcttgattc ggaacatagc ggactcgcag cttgagtacg       420
     tcaagcagaa gcgaacgccg gtggaaatct ggagggcctt gcaaagtgca ttcgctcgga       480
     aaggaatttc gggccagttc tttctgctca aaaagttgtc ggcaatgaaa tacgatgagt       540
     gcggttcgtt ggaagagcat ctgttggtgt ttgacagaat tgtgcgcgat ttgcaatcag       600
     cgggtattaa cttggaggag cggttgatcg ttttctacct gttacaaacg atgccgcggt       660
     cttacggtca gttggtgaca gtgctcgaga cgctttcgga taatcagtgt acgctagatt       720
     tcgtgcgggc gcggttgctg aacgaaagtg tgaaacgtgc gaacagtgac gatgcacagg       780
     cagaaaacga atctgctgca ttcgctggga aatcgtttcc gaaaagtgat tatcgaggca       840
     agagcaagtt gaagtgtttc tcctgtggaa agctcggaca caaacgatcc gagtgtccgg       900
     atcgaaagga tcaggtgtcg gaaaaggaga agaagaagaa tgtgtacaag ggaaaagctc       960
     acgtgagcga aaaagaagtg gctttcgtta gcagtctgat tggtggtagt tcgggtggca      1020
     gtgcaaatga ttcgccgaac agtgccgtta cgtggatttt ggactcgggg gcgtccgacc      1080
     atatggttgg aacggcagag tggttgcgcg atgtaaagaa gctcgatgag cccgtgttta      1140
     taaaagttgc gtccgggcaa gtgctcgaga gtaaatacag tggaacagtg aacatggttg      1200
     cacgaattgg caagaagcaa cagaagtgcg ttgtgagaga tgttctttat gttcccggac      1260
     tgcggtacaa cttgttctcg atacgacggg ttggtctgtt gggaatggaa gttgtgttcg      1320
     agaagaacag cgcagtgata aagcgcgacg gtgagatcgt ttgcattgcc aaacgagaag      1380
     actgccttta cgaactggac tcggacgtgc ggaaagtgaa gaaatcgaaa gccctactga      1440
     gtgaaaagac gatgagtgat gaagaattgt ggcatcggcg gtatggccac ataggaaaaa      1500
     gtggactcat gaaattgata aatgaggata tggtgaaagg cttagtgctg aagaaaagtg      1560
     aagtgccaga aagcaagctg tgtgaaccct gcttgaaggg aaagcagact cggcggccct      1620
     tcatcgagac gcccttgcct aggagtacac gaccgctgga gctgattcac agcgacgtgt      1680
     gtggaggtat gaaacccgca gcatggaacg gtaagcgata ctacgtttct tttactgatg      1740
     attataccca tttttcggcg gtgtatattt tgcactccaa agacgaggtt cacgatgcat      1800
     ttgtgacatt tgcggccatg gcagagtcgc actttgacag cagaatttcg cgcctcaggt      1860
     gcgataatgg aggcgagtat gtgggagaga agtttcgcga tttctgccgg gtaaagggta      1920
     tacagttgga gtacaccgtt ccgtacacgc cgcagcaaaa tggcgtaagc gagcggctta      1980
     accggaccat tatggacaag gcaagggcga tgatagagga tgcagggatg gacaaaaata      2040
     tgtggtgcga ggcggtcttg acagcagtct tcattatcaa ccggagccca acagcagcgt      2100
     tgcctagcgg aaaaacaccc tacgagatgt ggtacggcca taagcccgac gtttctaagt      2160
     tccggatttt cggtagtcga gctttcagtt ttataccgaa ggaaaagcgg aacaagttgg      2220
     agtcgcgtag taagccttgc ttcttcgtcg gatacggtgt taatgggtat cggctgtggg      2280
     acgggcggaa aatcttcatt gcccgtgatg ttgctgttga agaatctgct aagttgttgc      2340
     gtgaggaaag cgaaaatgtt ggggatgagg gttccgaaac tgtggagtta gctggaccac      2400
     tgcgggcgtc gacaacggaa gctgaggcta ctgcgttgaa caaacctgga ccggtcggcg      2460
     tgaatccgga ggtagctgcg gaagacggtt atgatcgtcc gctggagatg cttgacgtca      2520
     gccaagatga ggtattcgat gactgcgaag aaaacgaccc tgaagagaga gatcccctag      2580
     aaatccgtcg aagtgaacga gttcgcaaac caccaacgag aatggaagac tattcttgcg      2640
     tggctttcgc tctcaacgca gaaagctacg tggacaactt accagccaca atcgaggaac      2700
     tacgaaaacg ggatgattgg cccgattgga aagtagccgt agacgaggaa ctcaagtctt      2760
     tggctgataa tgagacgtgg gaactggtcg accttccaaa aggtcgaaaa ccagtggact      2820
     gtaagtgggt attccgcttg aaaaccaacc ctgatggttc aattcacaaa aggaaggcta      2880
     ggttggtcgc aaagggattt acccagcgtt atgggtacga tttccatgaa acgtacgccc      2940
     ctgtcatcaa gatgtcaact gtgcgaatga tgctggcctt ggcaaatcat cacggcttcg      3000
     ttgtccacca aatggacgtc aaggcagcat ttctcaacgg cgtcctcact gaagacatat      3060
     acatgcgtca gcccgaagga tttgaggagg gggagaaagt gtgcaagctt cgcaaatcaa      3120
     tctatgggct gaagcaatct tccaagacct ggaacgatag attcgacgaa ttcgtgaaga      3180
     agattggatt ccggcgctgt gtggaagata gttgtctgta tgttcgccaa gggaagttcg      3240
     gtcccgttta tctcgtgttg tacgtcgatg atgctcttat tatgtcgaag aatctgcagg      3300
     aagtcgagac ggtcaaacga ttgctgttaa gagaatttcg catggaggat ttgggcgaag      3360
     ctcaaatgtt tttgggcatc cggatcgagc gagatatcaa gaagggagaa atgaagttga      3420
     gtcagccaag ctacaccgag gcgatcctta agcgtttcgg tatggaagca tgcaagccgg      3480
     cctcaacgcc aatggccacg aacttgcagc tacagaagtc atcggaggta gaaaagctcg      3540
     agaaacccta ccgtgagtta ataggttgcc tcacatacct gatggtaacc acacgtcctg      3600
     atataagtgc ggctgtttca tacttcagcc aatttcagtg caatccttct caggaacact      3660
     ggacatatgc caaaagaata ctacgattct tgaaaggaac gatgcagcat ggcttggtgt      3720
     ataaaagaca ggaatcggca aagcagatca ctggtttcgc agacgcaaat tgggcaaccg      3780
     atcccaatga tcgccactct gtttcggggt acgtatttca gacgtatgga gctactactt      3840
     cctggagtac tcgtaagcaa cgaactatcg ctttgtcatc tacggagtca gaatgtagcg      3900
     ccttatccga ctgtatttgt gaatcactat ggatttcaaa gttattcaag gagctgaaca      3960
     tactggataa tgataccgtt gttatatttg aggataacca gtcggccatt gcgattgctc      4020
     aatcagaggg tccttcgaag aagctcaagc acacagacgt gaaattgcag tttatcaagg      4080
     agtgtgttat gaagcgaaaa gtgacaatcc agtatatgca gagcagcgag caaccggcgg      4140
     atatgttgac gaaaggtctg cctcccgcct ccttcaacaa gcactgttct actttgggga      4200
     ttaagaagtg ataagtttga ggagggg                                          4227
//
ID   Copia-144_AA-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.04, Created)
DT   12-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-144_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-184
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-184
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 606-606 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 184 BP; 51 A; 40 C; 27 G; 66 T; 0 other;
     tgttgggatc aatctgatca cctttagttg agtgtgtaac ttacattacc tgaattcata        60
     cacaccttga accgttttga tattatgtat tttaccgtgt aataaaacca ttccaatctg       120
     aaagtcaaac tatacagacg tgtttgtgtt ttactccgct cgtatccctg actcaatcat       180
     ctca                                                                    184
//
ID   Copia-145_AA-I repbase;    DNA;    INV; 4119 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-145_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4119
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4119
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 602-602 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4119 BP; 1062 A; 867 C; 1274 G; 915 T; 1 other;
     ggttgtgggc ccggtcgtgt tccgaaagtt acggtttcgc gaaaagtgtc gtgatggagg        60
     aggacctgcg cggggagcgt taccacctgg cgctgtttga cggatcaaac ttcaatgcat       120
     ggaagttccg tatgcaagtg cttctggagg agcacgagtt gctggaatgc atagagacgg       180
     aggttgatga cgtgcaggcg ctaaaggtgg aagtcgatga ttccccggac gtccggcagc       240
     agaaggcgaa taagaaggaa aagcgtgtga agaaggaccg gagatgcaaa tcacttctga       300
     tttcgcggat tcatgactcc cagctggagt atgtccaaga aaagcaatca ccaaaagaga       360
     tctgggacgc cttgagcagg gtgttcgagc gcaagagcat cgccagtaga atgcacctaa       420
     aacggcaaat gctgagcatg cgcttcgaag gtggttcact gcgggatcat ttcctgcgat       480
     tcgaccggct cattcgagag tatcgtggca ccggagcgga catggacgag ttggatgtcg       540
     tatgtcactt gttgctgacg cttggtccgg cgtattcgac ggtcgtcacg gctctggaaa       600
     cgatgccgga agaaaacctg agcatggagt tcgtgaagtg tcgtttgctg gatgaagaga       660
     cgaagaagaa gggactagat gtcgaatccg gcactgtgag caaggacact gctgcgttca       720
     cgggatcgca acaaacgaag aaagtgttta agtgcttcgg ttgtaaaaag gagggccata       780
     agttggccga gtgcccgaac aagaagaaga agaatgaaag ggagaaagtg aaaagtgaga       840
     agaaatccaa agcgcatgta gcggagcaga aaggcgtttg cttcgtcggt gtgtgtggag       900
     gaaataaacg ggatctgaag cgagtggaat ggttcatcga ttctggatgc tctgaccact       960
     tggtgaacga tgaatccctg ttcgacagtt tgaagccact cgacaacccg atcgaaatag      1020
     ctgtcgcgaa agacggagaa tcgattaccg ccgaatattc gggaacagtt aagcttgtgt      1080
     ctaacgttaa cgggaagttg attgactgtt cggtcgagaa tgtgttgcta gttccggagc      1140
     tacggtgcaa ccttttctcg gtactgaggg ttgacgaggc gggtatgaaa gtttcgtacg      1200
     aaaacggaaa agtgatcata caacgcgggt cggacacagt cgcgagtggt tcccgggttg      1260
     gaaaactwta ccgtttgaac ttgttttcga acaagcgcgg cgcggacaaa gctctgttaa      1320
     cgtgtgggcg tatcccgaag aacttagagc tgtggcatcg ccgtttcggc catttgaatg      1380
     ccaagagctt ggcgaagatg atccgaagtg acatggttgt cggaatgagc gtgaagaacg      1440
     gtgaaccgga caaaagtgtc gtgatctgtg aatcgtgcgt catcgggaag caaagtcgga      1500
     agccgttcgt tacccgtgaa gagagaaggt cgtcgcgagt gctagagtta gtccattcgg      1560
     acgtatgtgg accgattacg cccgtcggtt tgaacggcat gaagtatttc gtaacattta      1620
     cggacgattg gagccatttc gctatggttt tcctaatgga gagcaaggac gatgtgtttg      1680
     agtatttcga acagtacgaa gcgttggtga cggccaagtt tggccagaag ataagccgtc      1740
     tgcgttgcga caacggcggc gagtaccgga gtaagcggtt tgatcagttc tgcaagaagc      1800
     gtggtatcca agtcgagtgg accgtaccat ataccccgga gcagaatggg gtcagcgagc      1860
     ggctaaatcg aacgctcgtc gagaagaccc gttcgatgct gaccgactcc ggagtggaca      1920
     agcgcttctg gggtcaggcc atccaaactg cagctttcct gtctaatcga agcccatcaa      1980
     atgcgatcgc gtcgaatgtc acaccgttcg agctctggga ggggaagaag ccgaacgtct      2040
     ccaagctgcg agcgttcggt tgtcctgtct atgtccacgt cccgaaggaa ttgcggaaga      2100
     agctggacgc aaaggcgtgg aaaggtgtgt tccttggcta cgcgtgcaac ggatatcgtg      2160
     tgtggcatcc cgaggagaag cggattgttc atgcacgaga tgttgacttt gtggagacag      2220
     gcggtaaggc gtcgacaaaa ggtgagtctg ataaaccttt gttagatgtt gttatggttc      2280
     ccttgagtga tgatgaatca aatgcgagtg tgatcgacga ggaggtagaa gatgcgtctt      2340
     ccgaagcgtc ggacccggcg tctgatgaag agtttgcaag tttcaatgat ggcatgaacg      2400
     agcacgagcg tagcggtgag cttgaaggag agacagctgg ggaaactgac ggtggcgacg      2460
     gtggttcggg gcgaccacag cgtgtgcgaa atgctccggc atggcacaag gattacgagg      2520
     tagaatacgc cgcctacgct ttgaacgcca caagttacgt cgagaacctt cccaactcca      2580
     tctccgaagc tcgtaagcgt agtgactggc caaaatggga agaggccatt aacgaggaat      2640
     tgtattcgct acgaaagaac caaacgtgga cgctgacgaa actaccagag ggacgaacgc      2700
     cgataacgaa caaatgggtg ttcaagatta agcggggaat caatggtaag ccggatcgct      2760
     acaaggcgcg tctggtcgca agagggttca gccagaggta cgggctagac tatagtgaga      2820
     cttactcccc tgtggccaag cttgacactc tccgagctgt gctagcgttg gcgaatcaga      2880
     aaaggatgtt cgttcaccaa atggacgtcc gtacagcttt tctgaatggc gtgctgaccg      2940
     agcagatatt tatggtccaa ccggagggct tcgagactgg agatctggtc tgccggttga      3000
     acaagtcaat atacggactg aagcaagcat cacgcgcctg gaacgctcgc tttgatgagt      3060
     ttgttcaagg gcggctgaag ttcaccagga gtacgaacga tcagtgcctg tatatccgac      3120
     gatttggcga cgaggtggtg atcattgttc tctacgttga tgacgtgttg gtgatcagtt      3180
     cgtcgatgcg cgctgtggaa gctgttaaaa gttgcctttc taaggagttc gaaatgacag      3240
     acgcaggtga agtacagtgt ttccttggaa tgaacatcga tcgtgacatg aaggaaggtg      3300
     taatgcgcat aagccagcgg caatacttcg aggatatgtt gcggcggttt cgaatggacg      3360
     actgtaagcc tgtatcgacg cccctggaat gcagactgaa gctagcaaag ggcgaagaag      3420
     agaagcgcat ttcggatccg tacagggagc tggtgggttg cctaacctac gcttccgtca      3480
     ccactcggcc ggatttggca gcggcagtca acttcctcag ccaattccag agctgcccga      3540
     attctgaaca ttgggcgcat ttgaagagag ttttacgcta cgtcagaggt tcgctggata      3600
     tgtgtctggt gtacagagtc aacgagaaag caccaacact tgaagtcttc acggatgctg      3660
     attgggcgaa cgacgttacg gacagaagat cgattagcgg ggcagtattc aaggtgtttg      3720
     gatgtacggt tggctggact acccggaagc agaacacagt atcgttgtct tccacggagg      3780
     cagagctgaa tgctttgtgc aatgctgcgt gccacgagat gtggttggta cggctgctga      3840
     aggatattgg gtgcaacatc gaactaccga tcacgtttca cgaggacaac caatcgacaa      3900
     tacggattgc ggaggagtcg aaggattttg gtcgtctaaa acatgttgac gtcaagctac      3960
     atttcctacg cgatctcgtg aagcagaaga agattcgttt gcagtatcta cgatctgaag      4020
     accaagtggc cgacattatg acgaaggggc taccagcagg agcttttcgt cggcatcgta      4080
     ccggtcttgg actggtaaat tgcagcgatt gaaggggag                             4119
//
ID   Copia-145_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-145_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-209
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 607-607 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 209 BP; 57 A; 49 C; 29 G; 74 T; 0 other;
     tattgaggat gcaatccctg cacctactgt cccaatactt atggactcta ctgttcgacc        60
     aggtgtccac atttttatat cctgaagtgt aagatctttt tcatcagtgt aaatcaaaac       120
     aaccaacatg attaaacgtg ttttcctttt ctctaactaa atcgagttta ttcgctttat       180
     tcaagtggtc catccgaatt cccacttta                                         209
//
ID   Copia-146_AA-I repbase;    DNA;    INV; 4207 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-146_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4207
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4207 BP; 1147 A; 994 C; 1154 G; 912 T; 0 other;
     ggttatgggc cgttcgcgaa tgttctatcg gtacgaaaaa agtagtttct cggtcgtttt        60
     tcgcgaaatc gtataaaaat gcacgccgga agctcgagcg ctagcggtaa caatgctgct       120
     gcagctggaa gtggggcagt ccacagcatt tcgagccttc cgggaatcgc gcggctcaca       180
     ggacgcgata attggccgac atggaagttt gctgtacaaa cttacctgga gctggaggac       240
     ttgtggagtg cggtgaaacc ggagaggaat gcggatggaa cctacaaggc tgtcgatgca       300
     gctgcggatc gccgagcaag ggcgaaaatc attttgcttc tggagccgga aaattatgtg       360
     catgtgaagg aggcgcaaac ggcaaaagcc gtttgggaca agttagaaag tgcgttcgag       420
     gacacgggat tgacgcggcg agtaggattg ttgcacaagt tgctaaagac ggagctcaac       480
     tcctgcacct cgatggacga atatgtcaac cggattatgt cgacggcaca tcagctgaac       540
     ggaatcaact tcccgatatc cgacgagtgg gtcggaacgt tgctgctggc gggtcttccc       600
     gacgagtatc ggccaatgat tatggcactc gaaaactcgg gaatagcgat cactggcgat       660
     gtgatcaaaa caaaactttt gcaggaagtg aagttttcag ctgacgatgc agctttggct       720
     gggtatcgga aacccggagc agccggtcga ggtaaatata agccaaaaag cgaaccaaaa       780
     agtgatcccc ccaaagggcc gaaatgtcgc aaatgtcata aattcggcca tatcgcacga       840
     gagtgtcgaa gcaccagaaa ggacgatgca ttttgtgcgg tgttgtcgac gttttcgtcg       900
     acgaagaaaa acgactggtt catcgactcc ggtgcaagcg tgcacatgac cagtcgtcgt       960
     gagattctgg ataatgtaaa gccttcgaat ggaaccgtcg ttgctgctaa cgggaattgt      1020
     atgaacgtcg ttggaatagg gtcgaccact ctgaagccag tctgccagga acatagcatt      1080
     ccagttcagg aagtacaatt gattccggat ctttctgtga acctgctctc cgtaaaccag      1140
     attgtcagga agggatacac agtcgtgttt tcaaacaccg gatgcaaggt gattaacgga      1200
     aacggtgaca ctgtggcaac aggtaagcac gaaaacgatt tgttcaagct cgaacagcgg      1260
     caagatccag acagcactct ggcttgtacg acggcagtca atctagagac ctggcacaag      1320
     aggctggggc atctgaacac aaagagcgtg cgtaagctag ccagcggatt agtggacggt      1380
     atttcgatcg tcgatacgca cgccggtgac tgtaaagtgt gcccaatggg aaaacattgc      1440
     cggcttccat tcagcaagaa aggctcgcga gctgcagagg tgctcgatgt ggtgcatacc      1500
     gacatctgcg ggccgatgga agtcaaatca atcggaggaa gcagatatta catcgttttc      1560
     gtcgacgatc gatcaagaaa aatgtgggtg tatttcttaa ggacgaaatc ggagcctgag      1620
     gtattgagaa ccttcaagga gttccacgca ttagttgagc ggcagtccga gcggaagatt      1680
     aaagtgcttc gcagcgacaa tgggatggag tatctcaaca aaggcttcca aaattatttg      1740
     aagctgcacg gcatccaaca ccagacgaca aatccttaca ctccgcagca gaacggaatg      1800
     gcggagcgtg ccaatcgttc aatagttgag cgagctcgat gtcttttgtt cgaagctggg      1860
     atggtgaaga cgttctgggc cgaagctgtg aatacttccg tttacctgct gaatcgatcg      1920
     cccacgcagg gacacgattg tacaccggaa caggtgtggt ccggacgaaa accggatatt      1980
     tctcatctcc ggattttcgg taccaaagtg atggtacaga tcccgaagca acggcgacaa      2040
     aaattggatc caaagtctcg agagtgcatt ttagtcggat atgatgtcaa cacgaaaggg      2100
     tatcggctct acgacccgga agcgcggaaa gttttaacca gtcgcgaggt ttgcttcatt      2160
     gatgaaggaa tttcaaatcc accggactgt gtaaaacgtc ggaatgtcat cgagttggac      2220
     tacgaatttg tcaccatgaa gtcagccgta agaggttcgg gcgaccatcc gtccgacgac      2280
     gaagaagacg agttctacac tgacgatgag aacgctagca tcgacaacga ggaagagttc      2340
     aacggttttg acaacacagt ggccgacgtg acttccgtgc tcccaccgcg caaaacttca      2400
     catccaccta tgtcacaggt gtcgaggcct agcggtcggg agcacaaatt accaggcaag      2460
     taccgtgatt ttaaggtttc gttcaaaggt ctgccgcatt tcaaatcctt acagggaacc      2520
     gagccggttc aaagcaacca accggagcag gacgacgtgc cagtaccatc cgatgaccag      2580
     gcacagttca gcggggtcgc aaccgcgatc gacatggcag tagctaggag tccactagtt      2640
     gacggtgatc cagccacgca ccaggaggcc ctgtcccgag aggatgcgag tctctggaag      2700
     caagcgatgt gtgccgagta cgaggcactg atgaccaaca acacctggac cctcaccgag      2760
     ctgccacccg gtcggaaacc gattaaatgc aagtgggtct ttaagaccaa gcacgatgcg      2820
     aatggaaacg tggataggca caaggcacgc ctagttgtga aagggttttc gcagcgaaag      2880
     ggggtggatt atgacgagac ctactccccc gtggttcgtc atagttcact tcgatacctt      2940
     tttgccttgt ctgccaagct cggactttcc atcgaccaaa tggacgcaac gacagcgttt      3000
     ctccaaggag aattgtcgga ggtcatctat atggaacagc caccctgttt cgaaaggtcg      3060
     aataatcgca atttggtttg ccgactgaat aaggcgttat acgggctcaa acagtccagc      3120
     cgggtctgga acgccaagct cgatgcagct ttacgcagct ttggattggt tcgatccaag      3180
     tacgacccgt gcctttatta cttgattgat ggaaatcgca tcttgtttgt cgctatttac      3240
     gtcgatgacg tgattatctt ctccaacgac gaggcactca ctaaggacat caaggcaaag      3300
     ttgagcgatg ctttctgcat gaaggaccta ggaaaggcta gcaactgtct tggaattagg      3360
     atcactcgtg agaagaatgc tgtagcacta gatcaagagg cgtatatcga gtcggtgctg      3420
     gctcgattca acatggagaa ttcgaaacca gcttcaactc cgatgaatcc aggtgtgaaa      3480
     ctgaccaagg acatggcgcc gcagaccgcg gacgaagctg agaagatgaa aagggtaccc      3540
     tatcaggaag cggtgggcag tcttatgtac cttgcccagt gcactaggcc cgacgttctc      3600
     ttcgcagtca atcaactaag ccgcttcaac acgaaccctg gaccaaaaca ttgggacgct      3660
     gtaagacact tgcttcgata tttgcgaggc acgtcgaagc tcaagctacg ctacaccaag      3720
     catggagaat ccgagttgca aggttattcc gatgctagtt gggcttcaga cttggacgac      3780
     aggaagtcaa ctagcggcta catattcatg ctacaggacg gtgcagtgtc ttggtgctgc      3840
     aaacgccaac caacggtcgc tctttccacc tgcgaggctg aatacatggc cctatctgct      3900
     acagtccagg aggccatgtg gtggcgaggt ttgatatcac agttcggatt gaagcaaccc      3960
     gtcgaacttc gttgcgataa tcagagtgca atatgcattg ccaaaaatgg agggtacaca      4020
     ccacgtacca aacacattga catccgacat catttcatcc gggatgctct ggaccagaag      4080
     gctgtcgttc tgaactatgt aagcactgat caacaagtcg cggatggtct gacaaaaccg      4140
     cttgaccgca tcaagcttga acgaaatcga gcatcgatgg gaataaacgc atcaccttaa      4200
     gggggtg                                                                4207
//
ID   Copia-146_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-146_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-207
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 608-608 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 207 BP; 50 A; 41 C; 35 G; 81 T; 0 other;
     tgttggagta tttagaatta agctgtggtt tatctagacc attatctgtg ctggcatatt        60
     tgctttaacc catatttccc taaacgcgag ttagcgtgta agtttttgct cttgttattt       120
     tgctctattc aaataaatca gttactgaat aaacgatcaa ccgatacgga cgcttttctt       180
     ttctctgcgc gtattatctc cccatta                                           207
//
ID   Copia-147_AA-I repbase;    DNA;    INV; 4426 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-147_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4426
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4426
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4426 BP; 1313 A; 813 C; 1138 G; 1162 T; 0 other;
     ggttatgggc ccagaactac gagactcaga ttaagcagtt gtttaccatt gttcagacgg        60
     agaccatttt ctctgtggga caattggtta ggagtttgct cagtcggaga ccttcttttc       120
     cgagggcaaa cttagggaca gtttgagagg agttgtgctc agacggagac cattttctgt       180
     ggggcacact tcaatcaaag acaactgaca agacttctcg gcccttttat tgatttgttt       240
     tcttcctgct aaattttcat ttaggtttca aacatggaga accgtctcaa acgggtggtt       300
     gttccagtgt ttaaggggga tgaaaagtcg ttcccatttt ggaagaagcg aatggagcaa       360
     cacttcaaat atgaaggttt gttgcatacc ctcgagcaaa cgcccgagga agaggtttat       420
     tttgagccgg ttgcgggtgc ttcagtcgat gaagagactg aaaggaaagg taagctgcaa       480
     gcacgtctga aagaagagga tgcagctaca aatgaacttt ggctcgcttt ggatgatgag       540
     ccgatggggc atgttatgca atgtaactat gccaaggaaa ttatggagcg attggatgag       600
     atttatcaaa agcacggtcc aatggccatg attggacttc gggcgaaatt gttttcgctg       660
     aagtcacaaa aattcaatac tttgaagcaa ctttttgctg cccatcaaca aattgtccgg       720
     gaacttgaag gcatggggga agtattatca ccttccgaaa gattgaatac cttgctcgtt       780
     gcaattcccg atgaatttca gaatttaatt ggtgctcttt ccgttctacg taaagacgac       840
     cttgagatga tgtctatgga gcaggtccaa cgagttttct tggacgcgga ggaggcgaaa       900
     ggcaagagaa gtgcagcggg cccttcacaa gtggctatgt tcgccccgca gcattcaaga       960
     cgccagcaat caccacagta cagtgaccag aggccgccgg cacttaagca gaaaccattc      1020
     taccggaatg taacgtgttt cgagtgtggc aagcgtggcc acaagaagaa gtactgccgt      1080
     ttcgctcgtc gtaagcaaga aaccgaagtc acagtccact cgggtggacg gcgtcgagac      1140
     gtgacaatgg tcactcgaaa caacggtgcc ttcagggtgc ggatgcctct ggtagatcta      1200
     ccgaaggatt tcgtgcgtga ttgcaagatc atgaaaatga acttgacgaa gttgccggtg      1260
     ccatcgccgt ttgacggagc aaccttgctg gactccgggg catcgaggca catgttccgc      1320
     gacatcgcca tgttcaatgc tttgtgggat gcgtcggcaa cggttgagac tgccaagcct      1380
     ggtgagttct tgcgttcaga gagaatgggt aatgtgaatg tgaagacgaa taaaggttat      1440
     tatgtcacat tgcataatac actttatgtt ccggacctga attacaatat cctgtctgtc      1500
     tctcggattg agtcctctgg gaagtcggtc gtattcagag atggaagggt agaaattttc      1560
     gacgagtatg ggaggctggt ccttacgggg aagagacttg atggattgta cgtcatgggc      1620
     gttgacttcg aggaaaagcc tgataagata ttcacaggta aagtattgaa tgataatgaa      1680
     ttgtggcata ttcgatttgg acatttggga gcccaaagct tgcataaact ggtcagagac      1740
     agaatggtag agaggttgaa tctggaacca tcttccatgt ctgcttgccc attttcatgc      1800
     aaatcttgca tctttggaag acagaccagg gaaagctttg aagaatcgtt ccagaaacga      1860
     tctagacgac cactagagtt gattcattct gatgtttgtg gtcaaatgcc cgatgaaaca      1920
     tacgatggat acagatactt tgtaacgttc attgacgatt tcacacattt tgttgttgtg      1980
     tatttgatcc gctataagag cgaagtattg gaaaagttta aggaatatga agctatggtg      2040
     acttcacatt tctcggttcg catttcgaaa ctacgaacgg acaatggagg tgaatacttc      2100
     agtggagagt ttgtgaagtt ttgtagagag aaaggaattc aaatgacacc taccgctcct      2160
     tatacaccac aacagaatgg ggtcagtgag aggattaatc gaaccttgat ggaaaaggta      2220
     agaacgattc tccacgaaag taactgtcca tctatgtttt ggggagaggc gttgtatgcc      2280
     tcaacatata ccttgaatcg cagcccgaca agtgcattga aagttccaaa aactccattt      2340
     gagatgtggt tcgggactaa acccgacgta agtaaactca aagtttttgg ttgtgttgcg      2400
     tatgcacacg taaataagga acaccgtaca aagctggaca agaaaagcaa gtcgctttgt      2460
     atgatggggt atgcaccaaa cgggtacaga ttgtgggatg atgattttgg aaagattgta      2520
     gtctcgagag atgtaaaatt tgatgagtgt caattttact ttccgaaaac taacgagatg      2580
     atggaagaag atcatgattt ctgtgaggtg cagagaagac gcaaacccat acctgaacct      2640
     gtctttgttg atgttggcaa tgaagatgta tggtctgaag ttggtaatga tgattttttg      2700
     agtgttgaag aattgtccga taatgaacaa gatcatgaag cttctgtcga tgagcagggt      2760
     aatgatggga attctggaaa agggcaggtt cgtgatactt ctcaagaacg ttcggaagta      2820
     ggtcgccatt ctcagcgaac tgtgaaagct cctgcctggc tgaaagattt tgaaactgcc      2880
     tttctttctt tgagtggttc aggcgacgta ccacagaaca ttgatgacct tcgtaagcgg      2940
     agtgattggg gccaatggaa acaagccatt gatgaagaac tgaaagcatt ggttgataac      3000
     aacacatgga cattagttag tcaattgcct gaagggtgca aggctatcaa ttccaagtgg      3060
     gtgtttagta ttaaagaggg agacccacct cgatataagg ccagacttgt ggcgaaggga      3120
     tgtgcacaac gtccaggcat agactacagt gaaacctttg ctcctgtcgc aaagatgaca      3180
     accgtgagaa caatgctttc agttgcggtg aagaaagact ggttgataca tcaaatggat      3240
     gtaaaaaccg ctttcctcaa tggatcactc catgaagaag ttttcatgaa attgcctcga      3300
     gacgagaaag ggaatattaa gacatgcaag ttgaataaaa gcctttatgg tctaaaacag      3360
     gccggcagaa actggaatca acgttttaat gaagtagtca caaagcttgg tttcaaacga      3420
     tttagtagtg acacttgtct ttacagtgat tccaagaaag gcttgtatat catattgtat      3480
     gtggatgaca ttttgatttt tggaagtgac atatcaaata tcaattggat taaggggaag      3540
     ttatcagacc atttcaagat gaaagatcta ggggaagtga aaagcttcct gggcttagaa      3600
     atcacgagaa atcttgaaag aggtacccta gaactgtctc agcaatccta cattgagaag      3660
     atattagatg tttttggcat gaaagattgc agaccgatat ctacgccaat ggatctgaat      3720
     tccaaatggg tacgttcgag caagcctact gataaaccat ttaaggaatt gttgggttgt      3780
     ctacaatact tgacattgat ttcaagaccc gacataacca ttgccgtaag tatcctgagc      3840
     cagttccaga gcgatccagg agaggaacac tggctaggac tgaagagaat cctgcgctac      3900
     ctccaaggaa ctaaaacacg acgtttgatc tactaccaag agaaggatga cgaggcactc      3960
     aagggatatg tggatgcaga ctttgcgaac gacgttgaaa ggcgaaagtc gaattctggg      4020
     aacgcattcg tggtgttcgg caacatcgtg tcctggaaga gtaagcggca gaacatcgta      4080
     acattgtcgt caacggaagc ggagttggtt tctctatgcg aggccgtcag agaaggagtt      4140
     tggatatcca gcctgttgca ggagatcggg atcgtttttc aaccgttcac catatacgag      4200
     gacaacatcc catgcatcag gatttcggag gagccaagag aacatcaacg aaccaagcat      4260
     attgatgtgc ggtacatgta tatgagagat ttgatttccg agaagaaagt tcaattaaag      4320
     tacatcaaaa gtgaagatca gattgcagat gttttgacaa aaccactttt gaaatcaaga      4380
     tttttgaaaa tgtgtaaatt acttggaatg ataaattaag gggaag                     4426
//
ID   Copia-147_AA-LTR repbase;    DNA;    INV; 470 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-147_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-470
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-470
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 609-609 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 470 BP; 142 A; 87 C; 122 G; 119 T; 0 other;
     tgttgaaata tgtaatttat cattaggtaa cgttagccgt aaacagtaaa agtacaggag        60
     ggcatataca tttggtagcc ggccctccac aagagatgac agatggatgt aaataaaatc       120
     atatgaaata gcaagaacaa aaacggcaac agtgtcagca gttaggttag acatcgctag       180
     agtagaatgt agcagagtag ggtagttcgg tcacttgacc agttcaggtc aactagtttt       240
     cggtcggcaa cccggcttgt gaacttgaat aaagaaggcg gaaggccatt tattcgaagt       300
     ttactttttg gcttattttc tgtagcaacg tccgaaccgt gaagtccgag cagagtcacc       360
     cggaaggtcc tagaggacac ggaaaaggta ttggtaagta agtaacagta ggaaagtggt       420
     gggaccccct tggtttctca cttcctgctg ctggtttggc tctgccaaca                  470
//
ID   Copia-148_AA-I repbase;    DNA;    INV; 4189 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-148_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4189
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4189
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4189 BP; 1305 A; 803 C; 1063 G; 1018 T; 0 other;
     ggttatgggc ccagatgcac catagctacg gttgataatt attgaacaaa gcaaaatttt        60
     ttcaaacgaa gttttcacta tgctgaatcc cagagaaggt ggctccggat taccggatgg       120
     atctcatgtt gaaagaccca gaacaaccca gcgattcaca agcagtgttt ccttgcccat       180
     tacggagaga cttcgaggac gagagaacta cagttcctgg gcgttcggaa tgaagatggt       240
     actcatacgg gaaggaacct ggaatgttgt ggatgttgcg gatgatgctg tggttgatga       300
     agaagcctct ttgcgagctc tagctacaat ttgtttaagt attgaaccga ttaactatag       360
     tctagtccaa gaagccaaaa ctgcacatga agcatggaag aatctcaaga gcgcgttcca       420
     ggacagcgga atgactcgcc gtatgggtct gctgcggaag ctcacgagta ttcggttggc       480
     ggaatgcaaa tcggttgaag aatatgtcaa taaaattatg tcgacaagcc acaaattggc       540
     cgaggtaggc ttcaaggtgg atgatacgtg gctagcaagc ttgctcctga tgggattacc       600
     agaaaactac gagccgatga ttatgggtat agaagcttcg ggtaccaaga taacagcgga       660
     tgcagtcaaa tcaaagattc tgcaagatgt taaaatcacg agcgttccca agtcctgtgg       720
     atcggatggt gctttcgtaa gtaattttca gaagaagccg ctcaagaagg acaaatctag       780
     cgtcaagtgc ttcaaatgca aacggattgg acattttgct tcggactgtc ctcagaaagg       840
     catgattgaa gattctagtg ctggaccgca tcataggaag agctcgagaa acgccgcatt       900
     cagtgccaat gtgaaacaga tgaagaacca agaacaatgg atatttgatt ccggtgctac       960
     tgtccatatg tgtcgagaac gaagtaaact catcgatgcc agaagcactt cacaagctat      1020
     caatgttgcc aataacgcag aagttccggt ggttgcagtt ggaaacgttc tcctagaagc      1080
     tgcagtacag tctggttcgt atgaagtttc actatcagat gttttatgtg ttccagattt      1140
     ggccatcaat ttgctgtcgg tgagccagat atgcaagaag ggacataagg ttgtcttcac      1200
     ggatagtgct tgcaaggtct tcaaggctca gacgaacgag ttggttgcaa caggatctca      1260
     gaccaacgga ctttacaagt tggagatggt gagtcaggca acagcatgcg tggcgaatga      1320
     cagaagagag atgcagttat ggcacaggcg acttggtcac atgaatttcg acaatatgaa      1380
     gcgattaaga agcatggtta ctggcttgga tttcaaaaat gtacaaacat ccaatactca      1440
     atgcgttccg tgtattcaag caaaacacca acgtttacca ttcaaatcta aaggaagaag      1500
     agcgatggaa gttttggagt tggtccactc cgatctttgt ggtcctatgg aaacgatttc      1560
     gattggagga agcagatact ttcttacgtt tattgacgat gcgagtcgga agacgtttat      1620
     atattttttg aagtcgaaga aagaagtact ggctgctttc caagatttca aagcatacgt      1680
     tgagacacaa actggtaaga aattgaagcg attgaggacc gataatggaa aggagtatgt      1740
     tggaagcaat tttgaacgtt acattcgaga acacggcatt ttacacgaga caacagttcc      1800
     atataatccc gaacaaaatg gtttagcaga gaggatgaac cgatcgattg tggagcgagc      1860
     tagggcttta ttattcgatg ctggattaac caagcggttc tgggcggaag ctgttggtac      1920
     tgcagtttac cttataaata gatcgcctac caaaggagct attgttactc cggacgagaa      1980
     gttcactcaa gtcagaccag atatatcaca cctgaggaca ttcggcgcga aagcaatggc      2040
     acatgtaccg aaaaataagc gacagaaatg ggatagaaaa tctcaagcgt gtttgttcat      2100
     tggatatgca acgaattcca agggctaccg gctgtatgat ccggagactg gtaaggtata      2160
     tataagcaga gacgtgatta tcatcgatga aagcatgatt agtagcgatc gtgatcaagt      2220
     agaagcagta gacgtaaata acatggagct cttaactgaa tgtgcagaag attcaaatcc      2280
     gaaggtaaca ccagcagttg atgaaaatga tggaagcgac gaagaaagca tggacggcta      2340
     cgaatcgacc gttgatgagc tcgatgcaac cgttgtggag ccggctagca tcactgcgct      2400
     ccctccgcaa atttcagtgc caccgataca aagtgtggta aggcgcagcg cgagggagcg      2460
     ccaacaccca ggcaagtatt ttgattatga ggtaacctac agtgcctttc ctcagaaact      2520
     tgccatttca caggacagtt ctgatgagcg aagctgttgc caggcagctg gacaggttgg      2580
     tcaacgtttt aacgacacgc agaaggctac tgatgttttg caagaaccta acacgtaccg      2640
     tgaagcggtg gaacaatgtt gcagggagca atggatagat gcaatgaacg tcgagtatga      2700
     agcgctgatg caaaatcgta cgtggattat gacgcaacta ccagctgggc gaaaagcatt      2760
     acgaaataaa tgggtataca aaatcaagac caattcggaa ggatcgatcg aacgtttcaa      2820
     ggcgagactg gttattaaag gctgttctca aatcgaaggc gtagattata ccgagacata      2880
     ttcacctgta gtccgatatt caacaattcg gtatcttatg gccaaggctg tagagttgga      2940
     catggaagtt catcatatgg acgcagttac tgcgttctta caaggtgatt taggagacga      3000
     agaaatattc atgcaacagc ctgaaggttt tgaagatggg acaaaccgag tgtgtatgtt      3060
     gagaaaggcg ctatatggat tgaaacaggc cagccgcgtt tggaatctca agctggacag      3120
     cgaattaaaa cgaatgggac tgaagcgatc gaaatttgat acctgcgttt attattacat      3180
     tgaaggagat caagttctaa tcgtgacaat atacgttgat gattttttga ttttttcaac      3240
     caacgaccaa atgatcgaag ctgtgaaacg agaccttgcc aagaaattcc gaatgaagga      3300
     cttgggagag gctaagcaag tcctgggaat caagattacc agaggagaag gattcatcgc      3360
     cattgatcaa gaacgttatg taaacgagtt gctggaaaaa ttcaaaatga ctggatgcaa      3420
     ttccgtacaa actcccttgg atcccaatca gaagttaaca agtcaaatga aacctaagac      3480
     ggaagctgaa cgtgataaaa tgaagaacat tccttttcgg cagttagtcg gaagcttgca      3540
     gttcctggct cagtgttcaa gaccagatat ttgccatgct gtaaacctgg tgagtagttt      3600
     ttgtgaagac cccggagagg ctcactggat cgctgcgaaa cgtatcttga ggtatctaga      3660
     aggaacaaaa acatggaagc tcacttatgc gaagaatact gccgatcaac ttcaagctta      3720
     caccgatgct gactggggaa atgatgtgga tacgaggcgc tctactagtg gatatgtgtt      3780
     cctgaaaaat ggtggagcag tggcttggag ttcgcgtaaa caacccactg ttgcgctttc      3840
     cactactgaa gctgaatata tggcactatc ggccgtaact caagaagcgc tttggtggcg      3900
     aggctttatt gctgaacttg aaggaatctc atcaccactc ctaatcaact gtgacaataa      3960
     aagtgccatc agtctagcag aaaaagagat gggatattcc ccaagaagca agcatattga      4020
     tataaggcat cactttgttc gagagcagat agaaaagaag accatacgat tgaaacatgt      4080
     cgcttcgaat gatcaactgg cagatatcct caccaaagcg gtaccagccc ctaagttatt      4140
     ggaagcaagg gcatcgttag gagttaataa attatagctt aagggggga                  4189
//
ID   Copia-148_AA-LTR repbase;    DNA;    INV; 91 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-148_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-91
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-91
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 610-610 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 91 BP; 30 A; 19 C; 12 G; 30 T; 0 other;
     tgttgagttg aagtaagcca tgaatttata ataccccaat aaatcattcc ttgttcaaac        60
     ctgttcacaa tcagacgtgt ctttactaac a                                       91
//
ID   Copia-149_AA-I repbase;    DNA;    INV; 4187 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-149_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4187
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4187
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4187 BP; 1157 A; 813 C; 1222 G; 995 T; 0 other;
     ggttatgggc ccagtaaaac gcgagtgatc gattcgggaa tgataaacgg tcgtggaaag        60
     tgaatttatg agagaaatgg aggaggaaaa ggatgtgcat cgtgtgcagc tgtttgacgg       120
     gaccaatttc cctacgtgga agtatcggat ggaggtagtt ctggatgaat atgatctgct       180
     ggatttcatc acgacggaag cacgggaacg ggatgagttg gtcgtcaagg cggaggacaa       240
     tgcacaggag aaagaacgca aggagaagga gatggaaaaa gtgaggaaaa gggaacgcaa       300
     atgcaaatcc ctcatcgtct ccaggattag cgacagccaa atcgaatatg tgcagggttt       360
     cgatacaccg aaggcgatct ggaatgcact ttctcgtgtc tttgagcgta aaagcgttgc       420
     gaaaaggatg cacctaagtc ggcaattgaa ggagctgaaa tacgaaggtg gaccactgca       480
     gcaacatttc ctacggtacg aatcgctcgt ccggcagttg cgcggaatcg gagcggtgat       540
     ggaagatgtt gatgttgtct gtggattgct tctgagtttg ggtgacgagt atgcaactgt       600
     ggttacgacg ctagaatcgt tgccagccga aacgctcact ttagagttcg cgaaatgccg       660
     gctgttggac caggaaatca agcagaatgc atccggtggt gtaagtgcat cagcaaagca       720
     agattcagcg gcgttcggta gcagcactaa agggaagtat gcaggacagc agaagaaatt       780
     taagtgcttt tactgccaaa agattggcca taaagcatcg gagtgtcctg agaagaagga       840
     aaaggagaaa gagaagaata aaccgaagcc caccgcccac ttctcagaag aaagcaaggg       900
     tgtgtgcttc gttagtgtca aaaatccttg cgtgatgaag aaagtatcgt ggtttgtgga       960
     ctcgggtgct tctgaacaca ttgtaaataa tcgagatctt ttcgtgaggc tacaacgact      1020
     ggagcgacca atggagattg ccgtggtgaa aaacggagaa agtgtcgttg cgaagtactc      1080
     gggtactgta gttgtgaact cagtcgtcgg taagaagaaa atcgagtgtc aagtgaagga      1140
     cgtacttttc gtacccgaag cgaggtgtaa cttattctcg gttcgaaaag ttgaaagtgc      1200
     gggaatgtcg gtagtttttc gaaatgggac tgtgaagatt tttaatggct cagaggtggt      1260
     tgcaattggc aagcgtggta gtttgctcta cgaacttgag ttttacgagg tggaaggagt      1320
     aaaggcgatg aatgcgtcgt cgttatactc atgtggcgaa attcgtaagt gtgatgagtt      1380
     atggcatcgc cggtatggcc atctaagcca gaagaacttg atgcgtctcg ctaaaaatgg      1440
     aatggttgac gggatggaca agacactgaa atcgaaagat agtgatatcg ttgttatttg      1500
     caaaccgtgc gttgagggta gacaaacccg gaagcctttc gaaaaaggac acgtcgggaa      1560
     acgttcgtcg cgagtgctag agttggtgca cacagatgtg tgcgggccag tgaccccagt      1620
     gagtcatcat ggggcaagat actttgtatg tttcatcgat gactggagtc gctttgtgaa      1680
     ggtgtaccct atcaaaacca aggacgaagt gctacattgc tttgaggagt acacagccat      1740
     cgcagaggcg cagttcggaa cgcggatctc tcgcatccgt tgtgataacg gtggcgagta      1800
     ccgcggtaat gcgtttgtta agttttgccg tgaaaagggg attcaggtgg agtacaccgt      1860
     accttacacg ccggagcaaa atggagtcag cgaacgcatg aaccgtactt tggtggaaaa      1920
     ggctcggtcg atgctctcga actgtggaat cgacaagcaa ttttggagtg aagcagtcga      1980
     aaccgccgct tacttgacaa atcggagtcc tgcgagtgct ttggagcgga acaagacacc      2040
     gtttgaactg tggagtggaa gcaaaccgga catctccaat ttgcgtgtgt ttggatgtgc      2100
     tgctcactgt cacgtaccta aagagcttcg taagaagctt gatagtaagt cctggaaagg      2160
     catattcgtc ggttacgcta aaaatggata ccgtatcttc gaccctcgga gcaagaaggt      2220
     gattgtgatt cgtgatgtgg tctttgacga gagagtcgga ggcaacgcca tcaaacaggt      2280
     tgttatggaa tcgaagaagc aatcggaaac cagtggtttt ccaagcatcc accgtagtga      2340
     atcggacgaa tcgttgaatg atggtggcga ccacggtgcc gttggcggca gtaacaatgt      2400
     tcaaagcgga gtagccgagg aagtatcttc tgaagaggag ttcgaggggt tctctagctg      2460
     tggcgaatat gatcaaggaa atgaagaagt attcgaggaa gaccatcaaa ccgataatga      2520
     gccgcaggaa tcgttggagc gaagtcgtcg tattcgaaag ccgcctgtgt ggcagaagga      2580
     ttacaatatg gattttgcgg gattcgcttt gagtgccatc ggatttgttg acggccttcc      2640
     agatacgctg gaggaaatgc gaaagcgtga cgattggcca cagtggcaaa ccgccgtgca      2700
     agaggaaatg gactcgttga ttcgcaatcg gacatggacc ttaaccaagc ttcctgctgg      2760
     gaggaaacct atcacttgta agtgggtttt taaagtgaag cctggatcga aaggtgaacc      2820
     cgatcgtttt aaagcaaggc tggtggctcg cgggtttact cagcgatatg ggtatgatta      2880
     taccgaaaca tatgcgcccg tagccaggtt gaataccctt cgagcggtac tagcagtagc      2940
     gaaccagcaa cagttattag tgcaccaaat ggacgtccgt acagccttct tgaacggaca      3000
     gttagaagaa gaaatttata tggtgcaacc cgaagggttt cagcagggac acaacttggt      3060
     gtgtcgcttg aatcgttcca tttatggcct caaacaagcc tccagagcct ggaatgaacg      3120
     gttccatcaa ttcgtgatca gcattggatt tagacgcagt gacaacgatc cttgcctata      3180
     tatacgaagc gttggtggac agaaagtgtt tctcatccta tatgtagacg atatgctcat      3240
     tgtcggtcct aatttgagac tgatacagat cgtgaagaag ttgttgtcca aggagttcga      3300
     gatggttgac cttgatgctg tcaacggctt cctgggaatg cacattgagc gtgacgttag      3360
     tggaaggatt atgcggatcg accaacaagc atatctcaat ggtttgctga aaaggttcgg      3420
     catggaagac tgtcggcctg tgtccacgcc aatggaatgt cacctgaaat tacggaaagg      3480
     cgaagagagt gaacgtacag ataagcccta ccgcgaatta gtaggctgtc taacatacgt      3540
     gacgctagcc agcagaccgg acttgtctgc atctgtgaac tacatgagcc aataccagag      3600
     ttgtccgaca gaaacgcact gggtgcattt gaagagaatc ttaaggtacg taaagggaac      3660
     gcttaacctg gctttggaat ttcgtggtgc tgaaggagag gtggccctgt ccgccttctg      3720
     cgatgccgat tgggccaatg acgtgaatga tcggcgatcc gttaccgggt atttgttcaa      3780
     gatttttggg agcactaccg tctggctaac acggaaacaa ccgaccgtat cgctctcttc      3840
     aacagaggca gagtttgttg ccctgtgtgt agctgcctgt gagggagtat ggttggtgcg      3900
     tcttctaagc gaccttggaa tccaggttga tgttccggtg gtgtactacg aggacaacca      3960
     atcatgtctt agagtagcag aggagccccg agatagcaga aaaatgaagc acgtcgaggt      4020
     gaagtactat ttcattcgtg acttgatcaa aaagcgaagc attcggttgg aatacgtcac      4080
     ttccgaagac cagcaagctg atattttgac gaagggcttg cctactgcga cgttcattaa      4140
     gttacgaaag atgctcgggt tgcaggaatc acggaattga gcaggga                    4187
//
ID   Copia-149_AA-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-149_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 611-611 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 185 BP; 49 A; 43 C; 25 G; 68 T; 0 other;
     tgttgagcag tagcaattcc gctattcgac cttattacca ttaccccttg tcagacaaat        60
     gtcattatta catcattgca ctgttattga atatctaacc tcgaagaatt aaaacgtgtt       120
     tattatactt ccgtagttct tccgttttat tccgaatatt cacggccatt cctggttccc       180
     taata                                                                   185
//
ID   Copia-14_AA-I repbase;    DNA;    INV; 4169 BP.
XX
AC   supercont1.71;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_AA_;
KW   Copia-14_AA-LTR; Copia-14_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4169
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.71; Positions 1307922 1312090.
XX
CC   'AACC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..4159
FT                 /product="Copia-14_AA-I_1p"
FT                 /translation="MEDEKKWIFDGRNYDQWAYRMRVLLEEKGLVKCIEET
FT                 INEEDYAELPEDSMEVKTRKKQQLEEKWKLDRKCKSLIVHRVSDSHLEYVM
FT                 GRKTAKECWDSIQGTFQRRGLANRLYYRRRLGLLKLKSGASMQNHLLEFDK
FT                 LLRGLKMTGAKVEEDDAITQLLLTLPEQYDGLCTALETMSFDKLSMEFVKN
FT                 RLLEEEAKRFVKNDCLDEDGNTESAFAGKRFSFKCYNCGKLGHKRSDCRVK
FT                 MTEDNGRKYSEASGNSRNLTNHNGPRRGKANVHCATDIAFVATCETELAAA
FT                 VTQKTDNSFQWFLDSGASDHMVRDRSYFEELHRLPREISIAVAKSSQSLTA
FT                 KYAGTIRTCTEVEGRIISSIVEEVLYVPGLHLNLFSISRLEDKGMSITFPG
FT                 GKVKIVKDGQTVATGRKCGRLYQLHVLLKKEAEALLTKDDEAGLWHRRYGH
FT                 LGEANLQKLWKNGMVSTKATLLECVKQNPCEVCLSGKQTRQPFGVAEGQRS
FT                 TRVLELVHSDVSGPFTPGTYDSKRFFVTFIDDFSHFTVVYLLKSKDKVLEC
FT                 FEEYNAKVAAYFGVKIAKIRCDNGGEYTSKAFRSLCRREGISLEYTAPYTP
FT                 QQNGVAERMNRTLLDKARSMIFDAGLPKSLWGEAVLTAAYLSNRSPTSALE
FT                 ILKTPYEVWYNKKPDIDNLRVFGAVAHTHVPKQCRGKLDPRSERNYMVGYA
FT                 TNGYRIFDPRKKKIFVSRDVVCDENSRKPPTRSRDFNDELEEEEPQTDNEP
FT                 VIDDQNEAKVQDENQIRQIQNNDENEQNVIEAAGVAGNVEDVVSDPRRKRV
FT                 HAVDESFSDQPVSKRLTNPPVWMNDYHVSYSSVETPMAYALNAEAFVEEIP
FT                 NNIAELKKRDDWDRWKEAIESELQSLKKNGTWTLHPKPKEKNIVDCKWVFR
FT                 IKRDDNGNIERYKARLVAKGYSQKKNYDYTETYAPVARITTFRIMLSIANQ
FT                 FKYTIHQMDVKTAFLNGNLKEVIYMYQPEGFEEGDRNMVCRLQISLYGLKQ
FT                 APRSWNEAFNSFVLSLGFKRSNYDCCLYWKRTGGVVVYLLLYVDNILLMTN
FT                 NLEEIQLIKNQLSERFEMTDMGEVKQFLGIKVERYENQIKISQPKYIDGML
FT                 KRFGMEECRPTSTPMEPKPQFEHEGNIELTKQPYKELIGCLSYLMLSTRPD
FT                 IAAAVNTFSRYQAAPTDKHWSHLKRVLRYLKGTRDYGLVYRRRADSSPLIG
FT                 YADADWGNDGEDRRSISGFTFKIHDATVSWTTRKQNTVALSSTEAEYVSLS
FT                 QAACEAIWLRNVLQEFGVDISEPTRIFEDNQSCIRIAEEPRDHRRMKHVDI
FT                 RFHFIRECIQNKIIRPVYVSTKEQVADIFTKGLPAGPFAHLREKLNLFG"
XX
SQ   Sequence 4169 BP; 1327 A; 776 C; 1085 G; 981 T; 0 other;
     aaccgctgcg cctaatcaat aggttatagg cccagatacg ttattcgagt ttgaggaaga        60
     tttgcgaacc aaggtaatgg aggacgagaa gaagtggatt ttcgacggaa ggaattatga       120
     ccagtgggcg taccggatgc gtgtgttgct ggaggagaaa ggccttgtga agtgcatcga       180
     ggaaaccatt aacgaggaag attacgctga actccctgag gactctatgg aagtcaagac       240
     gaggaagaag caacaactcg aggaaaaatg gaagctcgat cggaagtgca agagcctgat       300
     cgtccaccgc gtctccgata gccacttgga atacgttatg ggaaggaaaa ctgcgaaaga       360
     gtgctgggat agcatccaag gaactttcca acgtcgaggt cttgccaacc ggctgtacta       420
     ccgtcgtaga cttggtttgc tgaagttgaa gagcggtgcg agtatgcaga atcatttgct       480
     ggagttcgac aagctactgc gaggactgaa gatgaccggt gccaaggttg aagaagatga       540
     tgcgattacc caacttcttc ttaccctgcc agaacaatac gatgggctgt gtacggcgct       600
     ggaaacgatg tcattcgata agttgtccat ggagtttgtc aagaaccgtt tgttggaaga       660
     agaagctaag cgtttcgtaa agaacgattg tctcgatgaa gacggaaata ccgaatcggc       720
     gtttgctgga aaaaggttct cgttcaagtg ctacaactgt ggaaagttag ggcacaagcg       780
     ctcggactgt cgagttaaga tgacggaaga caacggtaga aagtattcag aagctagcgg       840
     aaactcacga aacttgacga atcacaacgg accacgtaga ggtaaagcga acgtgcactg       900
     tgctacggat attgcgtttg tggcgacctg tgaaacggag ctggccgcag cagtcacaca       960
     gaagaccgac aattcgttcc agtggtttct ggattcagga gcatcggacc acatggtgag      1020
     agatagaagt tatttcgagg agctacatcg tttgccaagg gagatttcga ttgctgttgc      1080
     gaagagtagc caatcgctga ccgccaaata tgctggaact atccggacct gtaccgaggt      1140
     ggaaggaaga ataatatcat ccattgttga agaagtgctg tatgtccctg ggttacacct      1200
     aaatctattc tccatcagtc gtcttgaaga taaaggtatg tcaatcactt ttccgggcgg      1260
     gaaagtgaag atagtcaaag atggtcaaac tgttgcaacg ggacggaaat gtggaaggct      1320
     ctaccaatta cacgttttat tgaagaagga agctgaggcg ttattgacga aagatgatga      1380
     agctggtctg tggcatcgac gatatggtca tcttggagaa gcgaatttgc aaaagctgtg      1440
     gaaaaacgga atggtgagta cgaaagctac gttactggaa tgtgtgaagc aaaacccgtg      1500
     cgaagtatgt ctgagcggaa aacaaacccg acaaccgttt ggagttgcag aaggacaacg      1560
     ttcgactagg gtactggagc tggtacatag tgacgtcagt ggaccgttca cgcctggaac      1620
     gtacgatagc aagagattct ttgtaacatt cattgatgac ttcagccact ttactgttgt      1680
     gtacctgctg aaatcaaaag ataaagtttt agaatgcttt gaagaatata acgcaaaggt      1740
     agcagcttat tttggtgtga agattgcaaa aattcgatgc gacaatggag gagaatatac      1800
     tagcaaagcg tttcgatccc tatgccgtag agaaggaata tcgttggaat atacagctcc      1860
     gtatacacct caacagaatg gagtggcgga gcgaatgaat aggaccctct tggataaagc      1920
     tcgttcaatg atatttgatg ctggattacc gaaaagtttg tggggagaag ctgtcctaac      1980
     ggctgcatat ttgtcaaatc gtagtccaac cagtgcgctg gaaattttga agacacccta      2040
     cgaagtttgg tacaacaaga aacccgatat cgacaatttg agagtgtttg gtgcagttgc      2100
     acacacccat gtgccgaagc aatgcagagg aaagcttgat ccaaggtctg agaggaatta      2160
     catggttggc tatgcaacga acggctacag aatctttgat ccccggaaga agaaaatatt      2220
     tgtgagcaga gatgttgtgt gtgatgagaa tagcaggaaa cctccgacac gttcaagaga      2280
     tttcaatgat gaactggaag aagaagaacc gcaaaccgat aatgaacccg tgatagatga      2340
     tcaaaatgaa gctaaagtac aagatgaaaa tcaaatacga caaatacaga ataacgatga      2400
     aaatgaacag aatgttatag aagctgcagg tgtcgctgga aatgttgaag atgttgtatc      2460
     tgatccgaga cggaagagag tacatgctgt tgatgaatcg ttcagtgatc aaccagtatc      2520
     gaagcgattg acgaatcctc ctgtctggat gaatgactac cacgtgtcct atagcagtgt      2580
     tgaaactccg atggcctatg cgttgaatgc agaagctttt gttgaagaaa taccgaataa      2640
     cattgctgag ctgaaaaaga gagatgattg ggaccgatgg aaggaagcga ttgaaagcga      2700
     gttgcagagt ttaaagaaaa acggaacttg gactttgcat ccgaagccaa aagagaaaaa      2760
     catcgtggat tgtaaatggg tattccggat caaacgtgat gacaacggca acattgaaag      2820
     gtataaagcg cggcttgttg ccaaaggata ttcgcagaag aagaattatg attatacaga      2880
     gacttacgca ccagtggcac gaataacaac gttccggatt atgctgagta tagcgaatca      2940
     attcaagtac accatacatc aaatggacgt aaaaacggcg tttctgaatg gaaatttgaa      3000
     ggaagtaatt tacatgtacc agccagaggg attcgaggaa ggagatcgga acatggtgtg      3060
     ccgtttgcaa atatcgcttt atgggcttaa gcaagcgcca cgaagctgga atgaggcgtt      3120
     caattcgttt gttttgagct tgggattcaa acgatccaac tacgactgct gtttatattg      3180
     gaagcgtact ggaggagtgg tcgtatactt gttgctgtat gtagataata ttttgctgat      3240
     gacaaacaac cttgaagaaa ttcaacttat caagaatcaa ctttccgaaa gatttgaaat      3300
     gacagatatg ggagaagtta agcagttcct cggaatcaaa gttgaacgat atgagaatca      3360
     aatcaagatt agtcagccca aatacattga tggaatgctg aaacgtttcg gaatggaaga      3420
     atgtcgacca acatcaaccc caatggaacc aaagccgcag tttgaacatg aaggaaacat      3480
     agaactgacc aagcagcctt acaaggagtt gataggatgc ttatcatact tgatgctatc      3540
     aaccagacca gacatcgccg ccgcagtcaa cactttcagc cgatatcaag cagcacctac      3600
     agataagcac tggagccacc tgaaaagggt tttacgctac ctaaaaggga ccagagatta      3660
     tggattagtg tatcgccgca gagctgattc cagtccgctg ataggatacg cagatgcaga      3720
     ttggggaaac gatggtgagg acaggcgatc tatttctggc tttacattca aaatccatga      3780
     tgcaaccgtt tcgtggacta caagaaaaca gaacaccgta gctctctcat cgacagaagc      3840
     agagtacgtt tcattaagtc aagcagcatg tgaagcaatt tggctaagaa atgtgctaca      3900
     agaatttggc gttgatattt ccgaaccgac tagaatattt gaggacaatc aatcgtgcat      3960
     acgaattgct gaggagcctc gggatcatcg aagaatgaag catgtggata ttcgattcca      4020
     ctttattcga gaatgcatcc agaacaagat tattcggcca gtttatgtat ctacaaaaga      4080
     acaagttgct gatatattta ccaaaggcct accagcagga ccatttgcac atcttcggga      4140
     gaagctgaat ctcttcggtt gagcggggg                                        4169
//
ID   Copia-14_AA-LTR repbase;    DNA;    INV; 123 BP.
XX
AC   supercont1.71;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_AA_;
KW   Copia-14_AA-I; Copia-14_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-123
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.71; Positions 1307799 1307921.
XX
SQ   Sequence 123 BP; 40 A; 31 C; 16 G; 36 T; 0 other;
     tgttgatcta agcaaccgga agtccatgtc catgatcaaa gcacccatag aggaagtgac        60
     gtcttctttt tcttcttcat tcctattcca actactaacc aataaacacg tattataaaa       120
     cca                                                                     123
//
ID   Copia-14_CQ-I repbase;    DNA;    INV; 4183 BP.
XX
AC   AAWU01015579;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_CQ_;
KW   Copia-14_CQ-LTR; Copia-14_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 343-343 (2011).
XX
DR   GenBank; AAWU01015579; Positions   12740   16922.
XX
CC   Positions [1645-1935] - Integrase core
CC   'GTATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..1642
FT                 /product="Copia-14_CQ-I_3p"
FT                 /translation="MSTGGDGADAPGRAATKQTLSNLPPMELLMGRENWPD
FT                 WKFAVQTMLEVEGLWDAVEPAAGAVVDPVMDKLAKGRIILMVHKSNFHHLR
FT                 GVQTAKEAWTKLENVFEDSGLTRRMALINKLTSTRLDNSESMQAFVSDILE
FT                 AAHQLRGIGFDVTDEWVGSFLLNGLPASYRPMIMALENCGQAITGDLIKTK
FT                 LLQEVSVPSEGAAFASNKQHKKSTKSHQSNPPSSHLSTSKGPKCHIARDCK
FT                 MKEPKKDGSARCTVLSALNEEDDNWHFDSGASNHFSKSDAMLEDLQQYGGT
FT                 VVAANRGAMKVVAKGRMQLTPKSCPDSPIVVNDVQVIPELSSNLLSVNQIV
FT                 KRGCTVIFNSAGVKVLNSDGDVMATGTRYRELFKLDLRSQETKSALACSSA
FT                 VGLEVWHQRLGHLNLPSVRKLASGLANGIKIVGADKEDCKVCPMGKHTRQP
FT                 FNKKGSRATGMLDVVHTDICGPFEVPSMGGSKYYILFVDDRSRKMWVFFLK
FT                 TKSEEEVLRTFKEFTGWSNASPSAS"
FT   CDS           1803..2954
FT                 /product="Copia-14_CQ-I_4p"
FT                 /translation="MSTVRSWTGEEVLGGSRGHSCLPAQPVSHARSRIDAG
FT                 RGLDKQEAGFVAPENLRHQSDGPNPQTEATEAGPEVAQVHLCRLRRTRERV
FT                 SVLRPAVTESLQQPRGPLHQRRRTGEAGESTSRASGAAGHRTVRAAGSKWF
FT                 AESLCGNRRRHRERAGESRHGPDVDNSEDEFLGFEETAGSVTDVTSVLPPQ
FT                 SSSNPPLSPELRRSGREHKLPGKYDDFHVSLRGLPRPNPLQEVESTDTSDD
FT                 DASEDNSSEKSDDPVPPSRDTSCVVATARSLAVDGDPLSHKDARSREDSAS
FT                 WKKAMFDEYEALMANDTWTLTELPKGRNAIKCRWVFKTKHDASGNVDRHKA
FT                 RLVVKGFSQRKGEDYDETYSPVVRHSSLRYLSRSPPDMTCR"
FT   CDS           3007..4173
FT                 /product="Copia-14_CQ-I_2p"
FT                 /translation="MEQPPCFEDPTRRNLVCRLNKALYGLKQSSRVWNGKL
FT                 DAALKRFGLHSSKYDPCLYNRIADGKILFVAIYVDDVVIVSNDEGVKNEIK
FT                 AKLSSTFRMKDLGPVSSCLGIRVTRGQGCVALDQQAYIESMLTRFNMQNAK
FT                 PVSTPSNPCVKLIKEMAPKTADEAEKMKRVPYPEAVGCLMYLATCTRPDIM
FT                 HAVNQLSRFNANPGPKHWEAVKHLFRYLRGTCGLKLRYRKHGNTELVGYAD
FT                 ASWASDLDDRKSTSGYIFMLQGGAVAWSCKRQPTVALSTCEAEYMALAATV
FT                 QEASWWHGLLAQLGRKQPIELRCDNQSAICIAKNGGYTPRTKHIDIRHHYI
FT                 RDALDKKIVQLTYVSTDEQTADGLTKSLERIKLERNRSAMGISGSA"
XX
SQ   Sequence 4183 BP; 1049 A; 1112 C; 1266 G; 756 T; 0 other;
     ggttatgggc ctgttcgaac gcgtttgttc gagttaaaaa agtttttcgc cgcgagtttt        60
     cggaagtttc gcgatcgaaa tgtccacggg cggagacgga gctgatgctc ccgggcgcgc       120
     tgccacaaag caaaccctgt cgaatctgcc gccgatggag ctcctgatgg gccgtgaaaa       180
     ctggccggat tggaagttcg ctgtgcagac gatgttggag gttgaaggcc tttgggacgc       240
     agttgaaccg gcagcaggcg ccgtggtcga cccggtgatg gacaagttgg ccaaggggcg       300
     gatcatcctc atggtccaca aatcgaactt ccaccacctc aggggggtgc aaacggcgaa       360
     ggaagcttgg acgaagctcg aaaatgtctt cgaggattcc ggattgactc gacggatggc       420
     gctaatcaac aaactgacgt cgacgaggct ggacaacagc gagtcgatgc aagcgtttgt       480
     gtccgacatc ctggaggccg cacaccagtt gcgcggaatc ggctttgacg tgacggatga       540
     gtgggtcgga tcgttcctgc tcaacggatt gccagcatcg tatcgtccaa tgattatggc       600
     cttggaaaat tgcggccaag caatcacagg ggatctaatc aagacgaagc tgctgcagga       660
     ggtgtctgtt ccgtcggagg gggccgcgtt cgccagcaac aagcagcaca agaagtcgac       720
     gaaaagccac cagagcaatc cacccagcag tcacctgagc acatccaaag gaccgaaatg       780
     tcacatcgct cgtgattgca agatgaagga gccgaagaag gacggaagtg ctaggtgcac       840
     cgtgttgtcg gcactcaacg aggaggatga caactggcac tttgactccg gcgcatcgaa       900
     ccatttttcg aagtcggacg cgatgctgga ggatcttcag cagtatggag gaactgtggt       960
     tgcagccaac agaggggcga tgaaggtcgt ggcgaagggg cggatgcagc tcaccccgaa      1020
     aagttgccca gattccccga tcgtcgtgaa tgacgtgcaa gtcatcccgg agctgtcatc      1080
     gaacctgctg tcagtcaacc agatcgtgaa gcgaggctgc acggtaatct tcaactccgc      1140
     tggagtgaag gtgctgaact cagacggtga cgtcatggca actggaactc gttaccggga      1200
     actgttcaag ctcgatctgc gatcgcagga aacgaaaagc gcactcgctt gctcgtctgc      1260
     ggttggtctc gaggtctggc accagcgcct gggacacctg aatttgccga gcgttcgaaa      1320
     gctagccagt ggactcgcca acgggatcaa gatcgtcgga gccgacaagg aggactgcaa      1380
     ggtgtgcccg atggggaagc acacacgaca gccgttcaac aagaagggtt cgcgcgctac      1440
     cgggatgctc gatgtggttc acaccgacat ctgcggaccg ttcgaagtac catcgatggg      1500
     cggaagcaaa tactacatcc tgttcgtgga cgaccgttcc cgaaagatgt gggtgttctt      1560
     cctgaagacg aagtcggagg aggaagtctt gagaaccttc aaggagttca ccggatggtc      1620
     gaacgccagt ccgagcgcaa gctgaaggtg ctgcgaagtg acaacgggaa ggagtacgtg      1680
     aacaacggta tgagaagcta cctgaaacag cacggcatcg tgcaccagac gacgaacccc      1740
     tacaccccag aacaaaacgg catgtccgag cgcggaaacc gcacaattgt tgagcgcgct      1800
     cgatgtctac tgttcggagc tggactggag aagaagttct gggcggaagc cgtgggcaca      1860
     gctgtttacc tgctcaaccg gtctcccacg caaggtcacg aatcgacgcc ggaagaggtt      1920
     tggacaagca agaagccgga tttgtcgcac ctgagaatct tcggcaccaa agcgatggtc      1980
     caaatcccca aacagaagcg acggaagctg gacccgaagt cgcacaagtg catctttgtc      2040
     ggctacgacg aacacgtgaa agggtatcgg ttctacgacc cgcagtcacg gaaagtcttc      2100
     agcagccgcg aggtccgctt catcaacgaa ggcgtactgg agaagcagga gaatcaacgt      2160
     caagagcaag tggtgcggct ggacatcgaa ccgtacgtgc cgccggcagc aagtggttcg      2220
     ccgaatcgct ttgtggaaat cgacgacgcc accgagaacg agctggagaa tcccgacacg      2280
     gaccggatgt cgacaacagc gaggacgagt ttctcgggtt cgaggaaaca gctggctcag      2340
     tgaccgacgt gacctccgtg ctcccaccgc aatcatcttc aaatcctccg ttgtcaccgg      2400
     agttgaggcg cagcggtcgg gagcacaaac ttccaggcaa gtacgatgat ttccatgttt      2460
     cgctcagagg tttgccgcgt cccaatccct tacaggaggt cgaatcaacc gataccagcg      2520
     acgacgacgc cagcgaggac aactcgtcgg agaaatccga tgacccggtc ccgccgagtc      2580
     gtgacacgag ctgcgtggtg gccacagcca ggagtctggc agtcgacggc gatcccttgt      2640
     cccacaagga tgcgcggtct cgagaggact ctgcaagctg gaagaaggcc atgttcgacg      2700
     agtacgaggc gctgatggcg aacgacacct ggacgctgac ggaactaccg aagggcagaa      2760
     acgccatcaa gtgtcggtgg gtcttcaaga ccaagcacga cgcgagtggt aatgtagatc      2820
     ggcacaaggc gcggttggtt gtgaaaggat tttcgcagcg aaagggggaa gactatgacg      2880
     aaacctactc gccagtcgta cgtcacagtt ctctgcgata tctgtcgcgc tctccgccag      2940
     atatgacttg tcgatgacag atgacgcaca accgccttct gcagagcgag ttgaagagaa      3000
     attttcatgg agcagccacc ctgtttcgag gacccgacca gacgcaacct ggtctgccgc      3060
     ttgaacaaag cgctctacgg attgaagcag tcaagccgag tgtggaacgg aaagttggac      3120
     gccgcactga aacgttttgg cctgcattcc tcgaagtacg acccgtgcct gtacaaccgg      3180
     atcgccgacg gaaagatact gttcgtcgca atctacgtcg acgacgtcgt gatcgtttcc      3240
     aatgacgaag gggtgaagaa cgagatcaag gccaagctga gcagcacatt ccggatgaag      3300
     gacttgggac ctgtcagcag ctgcctgggc atccgcgtca cccgcggaca aggctgtgtc      3360
     gcgctagacc agcaagcata cattgaatcg atgctcaccc ggttcaacat gcagaacgcc      3420
     aagcccgtgt cgacaccatc gaacccgtgc gtgaagctga tcaaggagat ggcgccgaaa      3480
     acggcggacg aggcggagaa gatgaaacga gttccctacc ccgaagccgt aggatgtctg      3540
     atgtacctgg ccacctgtac ccggccggac atcatgcacg cagtgaacca actgagtcgt      3600
     ttcaacgcaa atcctgggcc gaagcactgg gaagcagtca aacacctgtt ccggtaccta      3660
     cgaggcacgt gcgggttgaa gctgcgttac aggaagcacg gcaacacaga gctagtcggg      3720
     tacgccgacg caagctgggc atcggatttg gacgaccgga agtcaacaag tggctacatc      3780
     ttcatgctgc aaggaggtgc agttgcttgg agctgcaagc gacagccgac tgtcgcgctg      3840
     tcaacctgtg aagccgagta tatggctctg gctgccactg ttcaggaagc ttcgtggtgg      3900
     cacggattgt tggctcaact gggacgaaag caaccgatcg agctacgctg cgataaccag      3960
     agcgccatct gcatcgccaa gaatggaggt tacacgccgc gtaccaagca tatcgacatt      4020
     cgtcaccatt atatccgtga cgctctcgac aagaagatcg tgcagctgac ctacgtcagc      4080
     acggacgaac agacggcgga cggcctgaca aagtctctgg aacggatcaa gctggagcgc      4140
     aaccgatcag cgatggggat cagcggatca gcttaaggag gtg                        4183
//
ID   Copia-14_CQ-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   AAWU01015579;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_CQ_;
KW   Copia-14_CQ-I; Copia-14_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 344-344 (2011).
XX
DR   GenBank; AAWU01015579; Positions   12556   12739.
XX
SQ   Sequence 184 BP; 50 A; 43 C; 33 G; 58 T; 0 other;
     tgttggagat ttaagctgtc cacttgtctg tggtagatta gtaaacaaga agaaatgagt        60
     aaacgccctt tagcgtgtag ctcaactcct gtcagatatt ttcactctgc tgtaaacact       120
     ctcgaataca actttgacaa acgtacacgc ggtttttatt tccactgccg ctccaccttt       180
     taca                                                                    184
//
ID   Copia-14_DTa-I repbase;    DNA;    INV; 4221 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   05-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4221
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (05-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental sample sequence. Both ends are probably truncated.
XX
SQ   Sequence 4221 BP; 1557 A; 600 C; 785 G; 1279 T; 0 other;
     ttagcgatct attatatgtg gttgagaagg agaagccaaa tgaagtagat gaatcctggg        60
     cgaaggcaga cagaccagct taaagcgtta taatagaatt tttaagtgac tcgtttcttt       120
     ctttagctga caataattcg accgctaaag aaatttttca aaaattggat tccgtgcatg       180
     aacgtaaaag tttggccacg cagctttcta tacggaggta attattaagg tttaaattaa       240
     atggcgacac tcctcttatt atacatttca ataaatttga cgaattgatc tctgagttga       300
     tggcatcagg agcaaaaatc gaggaggtgg ataaagtggc acatcttctc ttaacattac       360
     cctctgttta tgatggtgtt gtgaccgcca tagaaacttt atctgccgaa gctgttactc       420
     tttctattgt caaaaatggc ttacttgacc acgagattaa gctgaagaat taaagtaggg       480
     acacaagcaa taaagttttg caagatgtat ctttaaatag tagcaaacct aaggcattgc       540
     gtctaaaatc gaagtttaag gccaaaccct ccaagaactt taaatccaat ttaaaatgtc       600
     accattgcgg taaaaaaggg cacttcaaca aagattgttt cagttttaaa agaagcttgg       660
     agaataagga gaaacaagtc caagtagcta atgacgaaac aagtagatcg tttgcattca       720
     tgttgaggca gggcaaaagt tatacaggtg acgctaatgt atccttcata ttggactcgg       780
     gagcttcaga ccacgtttta aacaacatga atctgttctc caactattcg acactggata       840
     cacccatcga gatcgccatt gccaaacaag gggcatacat atatgcttct gcaaagggaa       900
     cagtccaact ccgaagcaat ctcaattcat gcattacact ggaaagtgtt ctgttctgca       960
     aagatgttcc acaaaatctt ctgtccgtct ccaagatgca agttgcaggc ttgacaattg      1020
     aatttaattc agagggagta cgagtttcaa tgaatggaca aggaatattt gaaggtatgt      1080
     gtaaaagcaa tgtatcgatt gttaatttta aaatgaacca taaagcatat gcaactgact      1140
     caaataaaaa tcaaagctat agtttgtggc atgaaagatt aggacatatt agcaaaagaa      1200
     aaatttttag atattgctca aaataacatg tttgaagatg tagaactagt aaaaaatatt      1260
     aagattaata atgaaatatg cgaagcttgc ataaatggta agcaagctag acttcctttt      1320
     gggaaagtaa agaataaaga atatattaag cggcctttat ttataattcc ttccgatgtt      1380
     tgtggtccga taactccttc tagtgttgat ggaagaaact actatgttat ctttctcgat      1440
     cattatacac attactgtgt aacttatttg atgacttata aatcggaagt atttcatttc      1500
     ttaaaagatt tcatcgcaaa gagtgaagct catttcaacc tagaggctgt gaatctttac      1560
     atctataatg gcagagaata tttgtcaaat gagatgaaag attattgtag tgaaaaaggc      1620
     ataagttacc atttaacggt tccacataca ccgcagttaa atggagtttc tgaacgcatg      1680
     attagatcca taactgaaaa ggctagagca ctgattagtg gatccaaatt aaataaaagt      1740
     ttttggagtg aggctgttta aacagcaaca tatttaatta atagaactcc aagtagggcg      1800
     gttcaggata agaaaactcc attttaaatc tgggacaaca gaaagccaca attaaaatat      1860
     ttaaagatat ttggttcaac agtatatgtg cataataaaa tgcgaaaaag aaaatttgat      1920
     gacaaatcat tcaaatgtat actagttggt tatgaacaga atggctataa gttgtgggac      1980
     ataagttaaa aaaaaattgt ggtagcaaga gacgttgttg ttgatgaaat caataaagag      2040
     aatactagga ctgtggtaaa tgactcagag ttccagaatg aaagtatgaa agtattcaga      2100
     atgatattat gaatggtcta caattgcctc ctaaaatgaa ttcagaagcg gtggagtcaa      2160
     atatcccgaa tgagagtacg gaaggaaaat ctgataattt tgaatcagat aaacagccta      2220
     ctgagacaac cacttgcaaa aatgccgatc caattgtaac aattggtgaa gaattgccta      2280
     gtattcaatt aaaagtagat gaaattgaag tcagaagaag tgaaagatta aaggataagc      2340
     caaagacatc atatcggttc ttaaacaatt gtttaatgaa tgcgcacact ttttgtgatg      2400
     acatcccaag taattacaat gatattaaaa atagaagaga cagaattaag tgggaagaag      2460
     ccgtaaaaga agaattagat tcgcattttt ataataaaac ttggacttta gttgatcagc      2520
     ctctttataa aaacattgtt gattgtaggt gggtttttac tataaaaatt aatgaaaatg      2580
     gccagcatat atagaatata aggccagatt ggtagctgga ggattcactc aagtgtatct      2640
     tttagattat gatgagacat ttgcttcagt tgcaagaata tctagtttcc gatttattct      2700
     atccatagca aatcaattca atttaaaagt acaccatatg gatgttaaga ctgcattcct      2760
     aaatggtatt ttgaaagagg aaatctatat gaagattccg tagggattat catatgaaga      2820
     tggtaaagtc tgtaaattaa ataaatcaat ttatggatta aaacaagtgg cacgatgttg      2880
     gtttgagaca tttgaaaatg ttttaaaaag catgggtttt agtaataatg ccgtggatag      2940
     atgtatctat ttacttgatc atggggatat cttgaaaaac atatatgtgc ttttataagt      3000
     agatgatctt gtaattgcaa cagaagcaat gatttaatga ctaatttcaa gacattccta      3060
     atgagtaaat ttaggatgac agacttatgt gagataagac actttattgg aataaaagta      3120
     gaaaagaaag atggttgtct gtatcttagt caatcagcat acattaataa tattttaaag      3180
     aagttcaata tgaaagaatg tcatgcagtc agtacacccc ttcaaactaa gttaaattat      3240
     aaagccctaa actcagatga agaatgtaat gccccatgcc gaaatctgat tgggtgtttt      3300
     atgtacctaa tgttatgtac ccgtcctgat ctaagtacag ctataagtat attgagtaga      3360
     tatacaaaca aaaataattc agaattatgg cagaatctta aaagggtttt aagatatcta      3420
     aagggcactg taaatctaaa attaacattt attaaaaatg aagattttaa agacacaatt      3480
     atttgatttg ttgattctga ctgggcagga agtgaaactg atagaaaaag tacaacaggc      3540
     tttatattta aactgtttga ctcaaatgta atttgctgga atacgaaaaa gcaaaattca      3600
     gttgctgatt cttccacaga agcggaatat atggcttcat tcgaagcagt tagataagct      3660
     ttatggttga aatcgttagt atctagtata aaatttgaaa taattaaacc aatcaaaata      3720
     ctagaggata atcaaggttg cattagtata gctaataatc ctacatgcca caaacgatca      3780
     aaacacattg acattaagta acatttctca agagaacaaa ttgaaaataa tataattgtt      3840
     ttagaatata ttccctcaga acaccaagtg gcagatgtcc tcacgaagcc gttgcccgct      3900
     gctagattct tgaccctaag gaacgaattg ggtctcaaga actaaaacta tatcttataa      3960
     agaaaactac atttaaaatt aaatgaaact tttaaaactg atacttaatt tagaacttag      4020
     tttaaagtaa ataatgaagt gagatttgaa tttaacgaaa cttatatttt gttgttaact      4080
     agtaattaaa gaaacattga atttgtgaat gaagttaata atttgtttta attaaccaat      4140
     gattcgatta aggttttact gggtttccct tcatcctaga actagtttct tttttgtatt      4200
     gaaaaactat ttctagatga a                                                4221
//
ID   Copia-14_DTa-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   05-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-14_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-239
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5639-5639 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus, probably incomplete.
XX
SQ   Sequence 239 BP; 74 A; 42 C; 44 G; 75 T; 4 other;
     tatggatcat ttattactgt tcccagaata tacaactgtc cgaataagaa tgatattgca        60
     atgctaactt aacktttaaa ttggtcaatg tatcttttga kgaggtgtat ggaaaccaat       120
     wcggtatttc caggagcaaa agatatttga ccaaacgcaa actggtaaca ctaaaagtgt       180
     tttgctctcg ctcttcccct tttgattttg acgtagagcg gacaagttgg cttwaaaca        239
//
ID   Copia-14_LH-I repbase;    DNA;    INV; 18629 BP.
XX
AC   ADOQ01005500;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_LH_;
KW   Copia-14_LH-LTR; Copia-14_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-18629
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005500; Positions     987   19615.
XX
CC   Positions [1568-2068] - Integrase core
CC   'TTAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1025..2980
FT                 /product="Copia-14_LH-I_2p"
FT                 /translation="MTYRRDWLSELQPCNDEEVSLGDGTICKVLGRGTVHI
FT                 ERFVENQWIVSRVEDVLYVPSLNKNLFSVGACINKNLRVVFNKNSVDFFRN
FT                 NELKAHGIKQNNNLFRMMFRVVTINHANVISNSKVDLKRWHERLGHVNHKY
FT                 IQQTLKNGLIDCSDSDTGPEDKFCEACQYGKQHRLPFQSIAHKKPLPGEVI
FT                 YSDVGGKMSEPSLGGSNFYVNFKDDSTGFRIIYFIKHKSDVLDKLNQFVNL
FT                 VETHHQRRVKTLHVDNGREYCNEAMTKYLCKKGISMETTAPYTLEQNGRAE
FT                 RDNRYIVECARTMLHARNLPVKLWAEAVNTACYILNRMPTVSNKGITPYEA
FT                 WTGKKPCLDHIRIFGSDAFMHIPKQLRKKWDKKSEKIILIGYQADSCNCRL
FT                 YNSRSGKIIVSRDVVIHETNHDQQVHSDVEITLSIAPNMSQEMTVQKDATE
FT                 YDPHEDEELVHKEENHQQTKRSISEDPKQSRSPEDGKRVLRDRQTLKKPSR
FT                 YEANIVEFDEPISYEDAISCEDAANWIKAINEELEAHDTNGTWTFEKLPES
FT                 KKTIGSKWVFKVKYLPAQNMYRYKARLCAKGFTQVKGIDYQEIFAPVARYD
FT                 SIRVMLALAAQQDLYIFQFDVKTAFLNGDLIEEIYLEIPEGVSVPSKDKVC
FT                 RLT"
FT   CDS           8045..10540
FT                 /product="Copia-14_LH-I_3p"
FT                 /translation="MLTCYYCSVKFKVISELFHHYQYTCSKFSFSTSSRIR
FT                 CGEFGCFRIFDSLPCLRMHLKRTHGAINKIISVTDAIISDTGETVNALTHP
FT                 ETNNVSTNTSRLKMRIWNNEIFENDEINFEEAAALDNDNNQTAKSILVRDL
FT                 ALIVSSLLSDLVVPRKTAQFLVKSLSEFLTISLTLALQKWYNTREDGIIDI
FT                 NNILQIIRDSVSNFSSEYRRNQYYKTIGTLIFPQEYPIALENVEFSRGLRK
FT                 RITGTGQFIPLRHVLHRFLSIPGVFTAIEKYIDDCMHSSSIINIIRTSTWL
FT                 QIKQFENANEKIYPLFIYYDEFETGNPLSSHAGIHKLGAVYTSIACLPPNL
FT                 ASQIKYIFLFALFHYSDRLTETNNQAAFQPVINELNYLSRVGISLDIPEFR
FT                 GVIKFKLGAILGDNLGLHSILGFVESFNAKYPCRICRANKEQVKQMCSEDI
FT                 SLLRNEENYVADVNSKNSSETGVRYKAIWYAVDDFNLFKHVAVDIMHDILE
FT                 GVGSYTMVLVINSLLSKKYFSLKELNDRAEAFDYGPDTNSKPPLLSSENLS
FT                 KIKWKMSSIETLHYIRYFSCLISHKIPDDDEHWRLYILLKRVLDFAMTDSV
FT                 DTNICDRLRWTVKNFNDLYLQLSPTPLKPKFHHLIHYAGIMEKLGPLCNLW
FT                 SMRYESKHRVAKIAARSLTNRINICKSLAIKNQLQLNHLFLENKLPCNFQH
FT                 SRKIKKVNLTFLLTQFNLSPSTKLYNVFFVTINGITYKPNDVLALHFDPEC
FT                 GNPIFFEISKIFICSINKKVYFEGHLFETITFDFHVYAYLVEKTDCQHFVS
FT                 YDSLIFVHPNTISILPPFGHFYITVRNSFD"
FT   CDS           15867..17873
FT                 /product="Copia-14_LH-I_4p"
FT                 /translation="MEIEQQDDADISNEDEMEIEQQREEDEMIEKNNVEIE
FT                 VHDEQEFYLESEKEDEINDETTSDDEIEDDVEVKEIMELRAWAIQNNIPHI
FT                 VLDALLKILRNCLLPTLPISAKTFLRTNSVRFNIEQFPLSRGQTTAEFVYF
FT                 SIAEGLRKCINVKLHANNTLNLIFGIDGTSPYKSSALQLWPIMCKAQFEPD
FT                 LYEPFPVAIYAGDKKPNDLKLYLQKFIEEINELQTNNIVLENQIFKINVMC
FT                 FVCDRPARSFIKGIKGHGGYYACKRCVVRGKRVALHETKCSNKTMIYPEID
FT                 CAERTDLSFRLEENPEHHICKTPLITIPTIDMIFHFVLDFMHLCCLGVMKK
FT                 LLLDYWIQSNSNVKLGVQGRLEISRRLLALQSQIPVEFQRTTRSLVDILKW
FT                 KATEFRFFLLYSGPVILKGILPKLLYRHFLLFHAACRILCSKELALKYNAK
FT                 AKTYLRIFVLTARNFYGSASQILNMHNLIHLADDAKNLSCSLSEITAFPFE
FT                 NAIKKIKQKIRSGKHPLAQLCHRYSELWSIDSVKKNPPPTITIEKFGRILS
FT                 SGDVLVKKLKWKNVVLSTKEPNNTILLHNDKVVKITDMYIPSIKEINDIII
FT                 VGRLMKIKSSMYAYPFSSKKLKQWEIVDNEERSKKITCGLHKIKSKMVRLD
FT                 VLVSSVTGEKKSYVMPLLHL"
XX
SQ   Sequence 18629 BP; 6307 A; 2859 C; 3079 G; 6384 T; 0 other;
     tcatcttcaa gaagttatgg gcccaggcaa cgcctagtgt gtgagatata gaaaaggaca        60
     ttcgttaacg tgagacccaa gtttcgttta cgttttcttt cttgtgtgag aatatttttt       120
     ctcttggaaa atggcagagt caatagactt aagaaacatt acgaaatttg aaggatctaa       180
     ctttcaagca tggaaattcc agttgaaagc catcctggtt gctaacaagc tcacggacat       240
     cgtttacgga acgcaagcaa gaccaagcgg tccagaggca tcggcagcac agataacagc       300
     ctgtgataag aaaaacgcaa aggcgatggt aattctctca tcaaccatac aagcctcgca       360
     acttgatttt ttgctaacat gcgaaactgc ccatgaaatg tggacaaaac taagtgcact       420
     tcacgaacag aaaagtgaga caaacaaatt atatctgatg tctcgctttc atgaccacaa       480
     gatggcatcg agtgacacgg ttgctcaaca cttcgcaaaa atagagaaca tggcgcatca       540
     attgaaagac ctcggtgaaa atgtctcaga tattacaatt atggccaaaa ttctaaacag       600
     tttacccgcg aagtttagtg tttttgtaac cgcatgggac agtgtagata gtgaaaatca       660
     aacgtttgat cgcttacgtg agagactcgt caaagaggaa agccgaataa atatagtgga       720
     cgaaacaacc agcgcgcttg ctgcgatgaa tacgaaatca agcaacaatc aagaacaaaa       780
     aacgtcaaag aaaaaggtat aacgctctaa aaaggacttg acatgccatt actgtcagaa       840
     acaaggtcat ttcataaagg attgttttaa gagaaagaag gaatccggaa atcgagacga       900
     taagaaatcg aagaatcagg gatcatccac taatgaggca ttcacagcag aagtatcaac       960
     aaatgagatt ctaggatcag ctacaaagga tgtatggatc ttagacagtg gcgcctcaag      1020
     gcatatgacc tatcgccgtg actggctctc agagctgcaa ccatgcaatg acgaggaagt      1080
     ttctcttgga gatggcacta tttgcaaggt tttaggtcga ggtaccgtac acatcgagag      1140
     atttgtcgaa aatcagtgga ttgtcagtcg tgtcgaggat gtgctttatg tgccaagctt      1200
     gaacaaaaat cttttctccg tgggagcttg tatcaacaaa aacttgcgag ttgtctttaa      1260
     taaaaattct gttgattttt tcaggaataa cgagctgaaa gcgcatggca tcaagcaaaa      1320
     caacaatctt ttccgtatga tgttcagagt tgtcacaatc aatcatgcta atgtgatctc      1380
     aaactctaaa gtggatctga agcgatggca tgaacgtctc ggtcacgtaa atcataaata      1440
     catccaacag acactcaaaa atggactcat cgattgctcc gacagcgaca ctggtcctga      1500
     ggataaattc tgcgaagcct gtcaatatgg gaagcaacat cggcttcctt ttcaatctat      1560
     tgcacataag aaaccactgc ctggagaggt tatttacagt gacgttggag ggaagatgtc      1620
     agagccatcg ctaggaggct caaacttcta tgtgaacttt aaggacgaca gcacaggttt      1680
     tcgtattatt tattttataa aacacaaatc agatgtttta gataaactca atcaatttgt      1740
     caatctggtt gaaacccatc atcaaagacg tgtaaagact cttcacgtgg acaacggcag      1800
     agaatactgc aacgaggcca tgactaaata tttatgtaag aaaggaataa gcatggagac      1860
     tactgcacct tacacgctgg agcaaaatgg gcgagccgaa agggataata gatacatcgt      1920
     cgaatgcgca agaaccatgc tgcatgccag aaatctacct gtaaaattgt gggctgaggc      1980
     tgtgaataca gcctgttaca ttttgaatcg tatgcccacg gttagtaaca aggggatcac      2040
     tccgtacgag gcatggacag gcaagaaacc ttgtctggat catatcagaa tttttggatc      2100
     tgacgccttt atgcacatcc caaaacaatt aagaaagaag tgggataaga agtcggaaaa      2160
     gataatcctc atcggatacc aagctgattc ttgcaattgc agactgtata actcacgtag      2220
     tggaaagata attgtatcca gagacgtcgt gatccatgag acgaatcatg atcaacaagt      2280
     ccactcagat gttgaaatta cactgtctat tgcgccaaac atgagccaag aaatgacagt      2340
     ccaaaaagat gcgactgaat atgatccaca cgaagatgaa gagttggtcc acaaggaaga      2400
     gaatcatcaa cagactaaaa gatctatttc cgaagatcct aaacagtcac gttcaccaga      2460
     ggatggaaag cgagtcctga gagatagaca aacattgaag aagcctagtc gttacgaagc      2520
     caatatcgtt gaatttgacg aacccatctc atatgaggat gctatttctt gtgaagacgc      2580
     cgctaactgg ataaaggcca tcaatgaaga gcttgaagct catgacacaa atggaacttg      2640
     gactttcgag aagttaccgg aaagcaagaa gacaattgga tcgaaatggg tcttcaaagt      2700
     gaaatactta ccagctcaga atatgtatcg atacaaggcc cgattgtgcg caaagggttt      2760
     tacccaagta aaaggcatcg attatcagga aatatttgcc ccggtagccc gatatgattc      2820
     gattcgagtt atgctagcgt tagctgcgca acaagacctt tatatattcc agttcgatgt      2880
     gaagacagct tttcttaacg gcgatctcat cgaggaaatc tatctagaaa ttccagaagg      2940
     agtaagtgta ccatccaagg acaaagtttg tagacttacg taggtcattg tatggtctta      3000
     aacaagcgtc gcgatcgtgg aaccgtaagt ttgatttatt tatgaaacgt ttcaagtttg      3060
     taccgagtaa agccgatccg tgcgtataca atatcggtga ttctgaatat ggaaaaatct      3120
     atttaattat ttacgtggac gacggactcc tattagcatc gtctaaagaa gcgttagatg      3180
     ctgtattgag cgaactaaaa acaaatttta aaattactga gggtgatgca agttcttata      3240
     ttggaatgaa aatcgtccgt gattcagaaa acaaacgtat ctttatacat caggcgtctt      3300
     atattgaacg tgttctccgt cgattcaata tgctagaagc aaatagcaaa gaaacacctc      3360
     cggatgtagg tataggttta tattcggcgg gagataataa caacgataat aatattttat      3420
     atcgacaagc gataggtagt cttatgttcc ttgctactgt aacacgacca gatatcgcat      3480
     ttatcgtgaa ttacttgagc agattcatgt taagttatga tgaaacacat tggcacgaag      3540
     ttaagaaagt ttttcgctat ttgaaaggaa agaagcatct agagattctg tatgaaagta      3600
     cgagtgacga cgcatgcata tgtggattct cacactgaga aaaatatcca gcgactctaa      3660
     tcggaaaaaa ccgttcgaac atcttatccg attgattttg attggatttg gggctatccg      3720
     atgaaatgat agatgccttt atccgatgaa ataaaatttc caatgaaata tgaacggata      3780
     atgagctgcg atttacttat ccgtttaaat tgatatataa tatgatcgga cattgcactt      3840
     gatcggataa aaataaagta ttttttccga tcaagctgaa tgtccgatct aatgtactat      3900
     atccgattaa aatattatcc gatgaaatac aatttatccg ttcagaagtc cgatgaaata      3960
     catgtgtaca catttcgaag tcgcgcgtgc actggtaact cgattgtgat tggtcgtgct      4020
     aacagtcgta ccgatgggcc cagcgtgcac gagcctgcat tctattgtct cgtgttcgtc      4080
     atcgaagcgt gaaggcagcg taaaggcagt gtgacgcaat attgtgtgca atattttgta      4140
     tataatattg ttgtattacg tattttatgt gtattattac gtgtcaagaa gtaaaagaaa      4200
     tgaattcgaa tacagtgaga acttttcttg aagaactgaa agtagaagaa gaagtgatac      4260
     aaattctcat tggtaagtaa tatctttttt ccctattata cagccttgac aaacgttatg      4320
     aggcactcca aaataaagtt ttcaaaatat tttttatgtt atttgtgttg ttttaaaaaa      4380
     actttatttt aatacggtgt ctcataattt tggccaaggt tatatatgtt tttatgcatg      4440
     tttatcattt ctaaatacca tttcctgcac gcaatttttt agaggaagat gtaacgattc      4500
     aagatcttga aactttgaaa aaagtagatc ttgatgctct aattaaaaaa tatggtcaga      4560
     gaaggagatt tgctagagtt ttgatacaat ggatgctaaa acgtggtctt cctgtagacc      4620
     cggaactttt agtggtatac acattttttc tctttttgtt ctctttttaa tttgcttttt      4680
     ttcttatttt atattgcggc aatatttaaa tagtagatat tgaagtatac attataataa      4740
     tattataatt tctctacatt tcttatttct tgtataaata atatgaaata taaattaatt      4800
     aatagattta ttcatttatt tttgttacat tatacatgat agaaattgct aacatatatc      4860
     aacaaagaat ttctggaatc agtatagctg taaataaaat actcaaaatt aatccatttt      4920
     aagatatatt tctatttttg tatttatgta attattttat gtttgattca tttatataat      4980
     tattaacatt ttctgacttt gttatatatt tttataagtg gtgacaaatg tttgcgtttt      5040
     tagtaacgtt ggtacactta acagaacgct gtattttttc ttttttccca ggcatttggt      5100
     gaagtgcaac ctgcacaagt catttgtgaa cagaagaatc agtcttctct agtggagagc      5160
     tctgatgaaa tctcattgtc gacttcttct gatcaattgt catctacatc tttcatcacc      5220
     gatgacagca atattacttt tttaacgacg gatttgacat ttccattgct aaccagccag      5280
     gaaaacaata cagaaaagct tccattttct ttagaaataa atgttgaaga ctgttctgat      5340
     gaacatacag cacttgagga agatttggaa aacgtatcaa agctggacga caagatttta      5400
     tatttcatag ataaaccaaa agctccgtta aaagaaaaaa acgttcagca gttgcaagtg      5460
     caatcagtaa tttctcaaga aaagaaagaa acagaagatt cgcaatcaaa aaatccattg      5520
     ttcttcctat tacaaaaaaa cggactccgt tgccgagaac ttgttagtca ttcccaacgc      5580
     aataattttg tgctggaatg gcgcgacatc aacttaattg caagaattac tgcaaagcat      5640
     cttcttaact tggccattcc gccaaaacgc aaaatattgt catcaactct aacaaggtgg      5700
     gcgcagtatt tcaagtgtct ttttccaaag acaccgacat tctgtttcta tgattttaaa      5760
     tacgagccat ctcaacagag ggatggaact gtaattcaga aaaaaagagc agagggagca      5820
     ctacaagttc aactttttca agaaagaaga aaattaatta aggaagatcg aactgttttg      5880
     ctgaggcgtc caagtacatc agaatctatc gacactaaca aaagtttaag ttcttcgaat      5940
     gtacctaaca agtcttcatc acacgttttt atcaaaaata cttggagatc tgtcggtcta      6000
     caagaagagg gagcgcgcag taaaatttca acaacaggta acttttttat tattattttt      6060
     aatatttgat ttttatattt ttattatttt ttattttttt atttgtaatt attttttact      6120
     tctttttcag atagtgatcc agaattacaa catcatttac attttttgtg caatcgatta      6180
     cacaacaaat taactctaca attagttact tcttgggaag taactttcaa ttacaggcaa      6240
     aatctacttg ttaaccaatc gggaactgtt tgggattact taaatcattt cccattctta      6300
     aaaattgacg acattggaaa agcttttgta agtttttttt aaatttttta tatactttat      6360
     tataatactt ttttctttac tttttcttta attttgattt tgtattaatt ttttatttga      6420
     aataatactt tgtcatcttt gtaataactt tttcatattg tatatcatat tttattttaa      6480
     aattatcttt ttataatatt tttaacaaat atttaattgg ctaactattg aatttttttc      6540
     tattataaat tgttgcttta attatttttt attatatttt acgtgattta gaattataga      6600
     atgtttattt gatttatcgt tatttcaatg agagataaag tgcataattg gacaattgtt      6660
     tttcgtatgt tttatatgag gtgtaatatt atagtcaatt aataaaaagt aactttttta      6720
     ttcgtattag atttgcaaag atttcgatca actatatccc gacatagatc cgattataaa      6780
     ttcaaatgag cagaaaaaca gtaaattggc tgcaattctt gatgattgca gactcgcaat      6840
     cattaaaaca gccaaagtta taattaaagg aggtagtcaa cgaaaacaca aggacgtagc      6900
     tacttcattt ctcgaattag ctgaacgtaa gtcttatttt tcttttctaa catttatatt      6960
     tactaacatt atttattaac atttttattt tatatttata tttatattaa tatttacatt      7020
     tacattttta gtccggattt gtttcattac attgatttga tatttaatat attttataaa      7080
     atgtagtctt tatttaaaat tatgaaaaca aattttaatt cttaatttta cattattcaa      7140
     agacacattt attcaaatta ttaataaaaa aataatgaaa aattaatcaa gctattaata      7200
     tgttgcgtgc tgtattatat ttttgatatg acacagaagt tgttaattat gtttcttttg      7260
     ttaaagaact gatttttttt caggagattc agatattcaa attagggtga caggagctct      7320
     actccttctt cctttcatat ttcctcatac ttttgtagaa aggacatgga aacctacaag      7380
     attagatatt gcagactcct tcatcgctaa agtttgtagt gaaacagacg taaaagaata      7440
     cattgagcat cgacgtaaat cactgtctaa aactaaaagg tcagttaaaa tcccttcttc      7500
     tgtacaaccg tatattttgg cagtaggttc aacttgggag aatattaatc atgtatatat      7560
     cattgtggac caaatcttgt atacgtgtga atctataatt gaagcgacag aattatgttt      7620
     taaattattt catgcttatt actctgatta tcccgctgaa tgtagacatg tgtggcaatt      7680
     aatccaacaa ggattttata aattgtttct taaggatcac gatttacaga ggcgaacaat      7740
     tactaaggct ttagctgata ttggcattga attaaatgct acagaagaat cagtaccgaa      7800
     aaagttaaaa aagtaattca gatattttaa aatttttttt gtctactgtg ataccttgac      7860
     aaattttctt gttttctttt tttgccacat ttgcttactt tttcttattt ttgcaaattt      7920
     aagaagcaat tgtgagattt ttaaatttgt tttttaaaat tagtaagaat tactatttag      7980
     tatattttga ttactttctt taattattac tttgtttcat tattgctgta acttttcgtg      8040
     catcatgtta acgtgctact attgttcagt taaatttaaa gtaatttcag aattatttca      8100
     tcattaccaa tatacttgtt ccaaattctc tttttcaaca tcttcacgta ttcggtgtgg      8160
     agaatttgga tgttttcgga ttttcgattc attgccatgt cttcgaatgc atttgaaaag      8220
     aacacatggt gcgataaata aaattatttc agtaacagat gccattatat ccgatactgg      8280
     tgaaactgta aatgcattaa ctcatcctga aacaaataat gtatcaacta atacttccag      8340
     actgaaaatg agaatttgga ataatgaaat ttttgaaaac gatgaaatca attttgaaga      8400
     agcagcagct ttagataatg ataataatca gactgcaaaa agcatccttg tccgtgactt      8460
     ggctctaata gttagttcac ttttatctga tcttgttgtt cctaggaaaa ctgcacaatt      8520
     cttagttaaa agtttatcag agtttttgac tatttcgtta acgttagctt tgcaaaaatg      8580
     gtacaacacg cgtgaagatg gtataatcga cattaataat attctgcaga taattagaga      8640
     ttcagtatcc aatttttcaa gtgaatatag gagaaatcaa tattataaaa caattggtac      8700
     tttgatattt cctcaagaat atcctattgc acttgaaaat gttgaatttt ctaggggttt      8760
     aagaaaacga attacaggta caggacaatt tatcccactt cgacatgttt tacaccgatt      8820
     tttatcaatt cctggtgtct ttactgctat tgaaaagtat atagatgact gtatgcattc      8880
     ctcttcaatt attaacatta ttcgtacgtc tacttggtta caaattaaac aatttgaaaa      8940
     cgctaatgaa aaaatttatc ctttattcat ttattatgat gaattcgaaa caggaaaccc      9000
     gttatcgagc catgcaggaa tacataaatt aggagcagtg tatacttcaa tagcatgttt      9060
     acctccaaat ttagcttctc aaataaagta catttttctt ttcgctttat ttcattactc      9120
     cgatcgttta actgaaacta ataatcaagc ggctttccaa ccagttatta atgaactaaa      9180
     ttatttatca agagtgggaa tttctttaga tattccagaa tttcggggag ttattaaatt      9240
     taaattggga gcaatactag gagacaactt agggcttcat tctatacttg gatttgtaga      9300
     aagctttaat gctaaatatc catgccgaat ttgcagagct aacaaagaac aagtgaaaca      9360
     aatgtgttct gaagatattt ccttattacg aaatgaagaa aattacgtag ctgatgtaaa      9420
     tagcaaaaat tctagtgaaa caggtgtcag atataaagct atttggtacg cggttgacga      9480
     cttcaatctc tttaaacacg tagccgttga cataatgcat gacattttag aaggtgttgg      9540
     cagttacaca atggttttag taataaattc attactatca aaaaaatatt tttctttaaa      9600
     agaattaaat gacagggctg aagctttcga ttatggtcct gatacaaata gtaaaccacc      9660
     tttattatct tcagaaaatc tgtctaaaat aaaatggaaa atgtcttcca ttgaaacctt      9720
     acattatatt aggtactttt cttgtttaat atctcacaaa atacctgatg atgatgagca      9780
     ttggcgttta tatattcttt taaagcgagt attggatttt gcaatgacgg actctgttga      9840
     tacaaacata tgtgaccgtt taagatggac agtaaagaac tttaatgatt tgtacttaca      9900
     acttagccca actcctctta aaccaaaatt tcatcattta attcattatg cagggataat      9960
     ggaaaaatta ggtcctttgt gtaacttatg gtctatgaga tacgagtcaa aacatagagt     10020
     agcaaaaatt gcagctagaa gtttaactaa tagaatcaat atttgtaaga gccttgcaat     10080
     taaaaatcaa ttgcaattaa atcatttgtt tttggaaaat aaacttcctt gtaattttca     10140
     gcattcccgt aaaataaaga aagtaaattt gacatttctt ttaacacaat ttaatctatc     10200
     accctccaca aagttatata acgtattctt cgtcacaatt aatggtataa cgtataaacc     10260
     taatgatgtt ttagcattac atttcgatcc agaatgcgga aatcctattt ttttcgaaat     10320
     ttcaaaaatt tttatttgct ccattaataa aaaagtatac tttgaaggcc acttgtttga     10380
     aactattaca tttgattttc atgtttatgc atatttagtt gaaaagacag attgtcagca     10440
     ttttgtatcc tacgactcgc ttatatttgt acatcctaat actatctcta tattaccacc     10500
     ttttggacac ttttacatta cagtgcggaa ttcatttgat taaagcgata attatttcat     10560
     tttttttatt ttaagaccaa tgctacatca ttaagtattt ttattttatc aaagtgcgat     10620
     atgcataaga tatatagcta cgttatggga ttaaataaaa ttcctttact gtataaatat     10680
     ataaattaac acgaaaaaac aaaacaaaaa aaaatgtttt aaactaaaaa aatattttat     10740
     atcctttata tatcttatct gtgttattta caactgtaac tgagagaatg taattcattg     10800
     tgttatactt gctacagtat ttatattttt gtaaacaaat aattacaatc atatttacat     10860
     gtaactctat gtaataatta agaaataaat atctatgtat taaatgtaat ttttattttt     10920
     atttcactta tgcacttctt catcatccat ttagctcttc tttttattga tatttttctt     10980
     aatattcgtg tgacatataa tatgtattac gtacacaggg tttgcatgat aactcgtgct     11040
     gagcttgatg agtgttttca gctaaacaga aaagtcctat atatatttgt tcgcaatttt     11100
     ttcttttttt tccataattc ttgagatttt aattaaagaa aatctccgaa cgccgatttt     11160
     ttatacttat aattagtatc cattaattct attctataat tgtaatatct cataatttgc     11220
     gaaaatgatt atatatgctt tttttgttca gctctatact atcagctcat gctgagcatt     11280
     ggtgccactt atcagcgtaa tttgaaaatg tttatattaa tatatttaag gattttacga     11340
     aaatatttat tttgatatat ttaaggattt tttgaaaata tttatatatt taatatgtat     11400
     gattttttaa aattatttat taattatatt caaggatttt ttaaaaatat taattggtat     11460
     atttaagggg aaaattccga tcagatgtta catcggatgt tattgatcgg acataatata     11520
     atcggactat tcattcaaaa agtaacaaac ggatatttta gatcggatat tttctaatcg     11580
     gaattttctg atcggatatt gttgatcggt catttcagcc ttcatcggtt attttttccg     11640
     attgaagaga tcaataatat ccgtttgtta ccttttgaat ggattttccg atcaatttta     11700
     accggatttt tctctcagtg cagacgcgga ctacgcgggt gatttagaca ctcgccgatc     11760
     atcaacgggt tatctattta aattagcggg aggtgccgtc acgtggggct cttctcgaca     11820
     gagggccgta tcgttgagta ctactgaagc agaatagatt gcggtgtgtg aggctgtgaa     11880
     agaagccatg tggcttaagc agctattaaa tgatagcgaa aatcagtgca caaatccaat     11940
     catcatcaac gttgataatc aaagcgcgtt aaaattaatt cgtaacccag aattcccccg     12000
     agtagaaatc atgattagga actggtagga tttttgatag ttttttctga tgtctggaca     12060
     ggcactgata aggaaagcag gcgtggttcc agccataaaa gttacgactg gcctcttcga     12120
     aaactgggca gttttactaa ttagttctgg tcagttctgg actggctctg ggctagtttt     12180
     taaatcggtt tttggatata tagaaacatt tctttaaatt ttggtacagt aaatacaaaa     12240
     caacttaaac tttttaaata ttaaaatatt tattttattt agagttttat ttcatttttt     12300
     aagttttctt aaatgtaaca cttataaaat cttttattct taaaattaaa cttataaatt     12360
     caaaattaat ttttaacaca ataaataaaa ataacatttt cttttattct ttactctgct     12420
     ttcttgcagt acgttggcct tcccaatcct tcgcattaga gattacgtta cctagacaag     12480
     taaagaaaga tttttctgtc actactggat tttcttgatc cttgttatat gttttaaata     12540
     caatatctga aataatacat tgcatttaat aacaataatt attaagcaca gtcgtctaca     12600
     attaataatt tagaaagatt ttttgtcaga atcggaacaa gtgccttggt agtctcagac     12660
     cgatgataca acggcaagtc actgtatctt taaatattag tttagtgccc tgttgcttaa     12720
     ggcacgtata ctggcacata actactcttt tgacaagttt tctcaaaata cttgtcaaca     12780
     tttttgacac actattatcc ctatctattg ttacatagat ggatcgcttc tgaaatatga     12840
     ataaaataca ttttcactca aagactaaat ttgtgttaat aaaaaatagt tatctaatag     12900
     tttctttaat ttttatgata ttaatgctca cgaattccaa ctgaaaattt ttttcaattt     12960
     tgagacgatt atcaaattct tgaaagtctt ctaaagcact aaaaggcatg tttaactcgt     13020
     atttctccat gaaatcagta aaggttatta tacaatcatc atcttgattg atatttctaa     13080
     cgcgtaatat ctcttttacg tctcttattt catttgccat cgatgtgatt tgcagagtta     13140
     attttctttg cattgatatt atatcgttaa tgccttaaaa ataaatatta tttaaataaa     13200
     gtgattacaa gagagtaatt acaagtatat ttcattttat acgtaccatt caaaattttt     13260
     tttgaagtat ctggagcaga taagttatca gtgggttttt gggtttttga ttgatggact     13320
     ataaataaaa atattataac taaaattaat ataaaaaaaa ttaatattgt agcaaaataa     13380
     tagaataatt gcattataat tacaactcgg tgattcagca atatacaatt cattgtcaga     13440
     aatatcattt tttgataatg atgacagatt atcttctttt gatttgtaga tgatttttgt     13500
     tttctattac tgcctcagga aaagtagtag ttctttggaa attttcggaa tcgctttcgc     13560
     tgctatcttt acttgaatct tttaaacctg caaaaataat ggacatttat agaacataaa     13620
     atttgtggac gaattttttt cttataacta actgttagtt tcattcaact ctaaatcgtc     13680
     ctcttcatcg tccagctggg gaacttggga caatagtttt tttcccaatt tttcgttgtc     13740
     ttttaaaaat ttttttcttt attgcattaa atgtttttaa tgcttttctt cagcatgttt     13800
     ctcgcaatct gttgtataag cgtatttttt agttttaatt tttaatttgt ctaatgcatc     13860
     agtgtagtta tctgaaaata tatagcaaat tattttactt attattttag ttattttact     13920
     tttattaatt ttttttttaa ttatgtttcc tattatgcaa catatgttga aaatataatt     13980
     ttgcaacact tattacctaa attgttgtac gtattatttt ttttaattat tataattatc     14040
     aataattttt tattgttaaa atgttgaaaa aaataaatta taaaattttt tgttagttaa     14100
     tgtgtaatgt tttttacttg aatcgcctcg tataataatt ggccattttc tccaactctg     14160
     cagaggattg gattttgttc gcacaagatg gtgtaagaaa tcacgtcttt tttcattttc     14220
     aagttctccg gaaatggtga aacgagccta catgatttta tgtcgtatgt aatccaacta     14280
     gttggtacaa catccacaat tttttggaga caattttctt cgtggaactc gataatttga     14340
     taatggcgtt cagtatccat cagctttaat aacacattta agtcaaaact taatgaaatg     14400
     aatattaaat attatttata ttagaatttc acaacttact ttagaacgtt tagagggtgt     14460
     agcgtatgga tgatgttggc tgtgatgttt tcgagttgcc attattttca gtcaaatttc     14520
     ttttaccttc acgaaaactt ttacacatga gataaaacat gtattttata tgtcaattga     14580
     ttttaaggtt aacatgcttt cgttatcata gtcaattacc agcatacaaa aaaaaataga     14640
     aaataattgc aatcgattat taatcgtctt ctgttgtaaa attggtaatc gattatgact     14700
     ataataattg ctggatgtta tgtagtacaa gaggaaaaaa aataatcgtt tgatattaaa     14760
     actacttacc tcgtattaga cacacgcctt gtattagaca cacttcggta aaacacgctc     14820
     gcttcgatca gcacccggaa tatttagttc tcagtacact acttacttcg aaagctaacg     14880
     aacgattgcg ccgtcttcaa tctgtgatct tcaatcctct ttatttaaac ttttctaaaa     14940
     acatctatca aagtcaataa ccattttgcc taatttgtcc ctctacatag aggcgtttat     15000
     acaatatggt atcgcagtaa atacaaaatc agcattacca atagataaag tactgatttt     15060
     atagcgaaat tttattttca ttgaccataa tcacagtaag ttttacgata aaaaacaaaa     15120
     aataagtgtt tctactgaat attggtgaaa tactcagtga atcttagtga aatcctattt     15180
     tattgtttcc attatagtaa cattttcact gattcacttt ataaaaaaaa ataataattt     15240
     taggttacat tcacggatgt taaaggcgct aaatatttat acatattcag agtgtattaa     15300
     gagatacgat caacttcaag tgcagcgtga aactgtattt aacatccgtg aacgtaatct     15360
     gaaattatta ttttttgtcg tttataaaag actgaaactt ttgcattgca aatctagaaa     15420
     atagtaaatt aacatcaagg tttaattata ttataattgt gttcgtgtta tttatttttt     15480
     tttatttcta cgtactatct actacttatt actttttact tttttgtttc atagtctatc     15540
     ataaaaatgg atagaataaa gtatacggca aaaatgcgaa tgagacgcaa acgtgcttta     15600
     tataaaattc aagaaagtaa gtaatgatgt taatatattt attatttata gtgttatata     15660
     tataaaggga tctcgataaa actgtgatta aaaattatta aaaaatacga tcttttattg     15720
     tggaaaaaat gttaaatctc tccataaatg tcaataaaga gcattttaat actttttttt     15780
     aattatttta atctttcaca gaggataata ttcaaaatac ggattgtcaa gaagaagtag     15840
     aagatgaaga agaaaacaga atagaaatgg aaatagaaca acaagatgac gcagacataa     15900
     gtaatgaaga cgaaatggaa atagagcaac aacgtgaaga agacgaaatg attgaaaaaa     15960
     ataatgtcga aatagaagtt catgatgaac aagaatttta tttagaatcg gaaaaagaag     16020
     acgaaataaa cgacgaaact acaagtgacg atgaaatcga agatgacgta gaagtaaagg     16080
     aaataatgga attacgagca tgggccattc aaaataacat cccgcatatc gttttggatg     16140
     ctttattaaa aatattaaga aattgtttgc ttcctactct gcctatatca gctaaaactt     16200
     ttctgagaac aaactctgtc cgatttaaca tagaacaatt cccattaagt cgtggccaaa     16260
     ctacagcaga atttgtttat tttagtatag ccgaaggact tcgtaaatgt attaatgtaa     16320
     aacttcatgc aaataatacg ttaaatctta tatttggtat cgatggaaca tcgccatata     16380
     aatcaagcgc tcttcagtta tggccaatca tgtgcaaagc tcaatttgag ccagatttat     16440
     atgagccatt tcctgtagca atctatgcag gtgataagaa accaaatgat ttgaagttat     16500
     atttacaaaa atttatcgaa gagattaatg aattacaaac gaataacata gttttagaaa     16560
     atcaaatttt taaaatcaac gtcatgtgtt ttgtctgtga caggccagct cgttcgttta     16620
     ttaagggcat aaaaggacat ggaggatatt atgcttgcaa acgatgcgtt gttcgtggaa     16680
     aacgagttgc tcttcatgaa acgaaatgtt caaataagac aatgatttat ccggaaattg     16740
     actgtgcaga aagaacagat ttatcatttc gactcgaaga aaatccggaa catcacattt     16800
     gtaaaacacc tttaattact ataccaacaa ttgatatgat ttttcatttt gtgctagatt     16860
     tcatgcatct ttgttgcttg ggtgtaatga aaaaattatt attagattat tggattcaaa     16920
     gtaattccaa cgtaaaatta ggcgtgcaag gtagactcga aatttctcgg cgattgcttg     16980
     cccttcaatc tcaaatacca gtggaatttc aacgaactac aagatcgcta gtggatattt     17040
     tgaaatggaa ggcaacagaa tttcgatttt ttctattata tagtggccct gttattttaa     17100
     aaggtattct gcctaaatta ttataccggc attttctttt atttcatgct gcgtgcagaa     17160
     ttctttgcag taaagaattg gctttaaaat ataatgcgaa agctaaaaca tacttgcgaa     17220
     tttttgtatt aactgctcgt aatttttatg gatcagcttc acaaattttg aatatgcaca     17280
     atctcattca cttggctgac gatgcaaaaa atttaagttg ctcattaagt gagatcactg     17340
     catttccgtt tgaaaatgct attaaaaaaa tcaaacaaaa aattcgcagt ggtaaacatc     17400
     cattagcaca actgtgtcat aggtacagtg aattgtggtc gattgattcg gttaaaaaaa     17460
     atccaccacc aactattact atcgaaaaat ttggacgaat cttgtcatct ggggatgttt     17520
     tagtaaaaaa gttaaaatgg aagaatgttg tcctctctac taaagaacct aacaatacaa     17580
     tattgcttca taatgataaa gtagttaaaa ttacagatat gtacattcca tcaataaaag     17640
     aaataaatga tattataatt gtgggaagat tgatgaagat caaaagttcc atgtatgctt     17700
     atcctttttc ttctaaaaaa ttaaaacaat gggaaattgt agataatgaa gaaagatcca     17760
     aaaaaataac gtgtggatta cataaaatta aatcaaaaat ggtacgtttg gatgtccttg     17820
     ttagcagcgt aacgggggaa aaaaaatcat acgttatgcc acttcttcat ttataaaaaa     17880
     ttgtataaaa taattgtgaa aattaaaaaa atatatatat aatcaatgtt ctataaaata     17940
     taattaatgt tataaaatat gcataaaata taattgtata aaatataata cgtacaaaat     18000
     atatgtaatt gtgtaaaatg taatgaatgt atgaattagc tacgcaatat gcataatctt     18060
     attcacttag cgtcatttag ttcgagatag ggttttccct aagtgtatca agactggaaa     18120
     tctagtcagt ggttggtcgg aaaatggccc gaaatgcctt gactgaaaac actgaaaggg     18180
     gcctagtgcc ctgtcagttt cccatcagta tttttagtca aggcatttcg gatcattttc     18240
     cgaccaacca ctgactagac ttccagtctt gatacattta gggaaaaccc tatctcgaac     18300
     aaaggaaaac tgcttagagt cctccttaga gcccggctaa cattacttat tagggaatgc     18360
     cacgacactt tctgaataga tactattcag acatctggta ttccatgaca gatttctact     18420
     cgggccatag gcgaagcaag cacattgata ttcgttatca ttttgtgcga gagaaatatg     18480
     agaatggtga tattaatgtt cagtatgtgt gtagccgaga tcagttagct gacattttaa     18540
     caaagtcgct cgggcgagat atttttaaga aactacgtac aaatattgga atgacgtgca     18600
     taagcatgga gactatcaaa gggcgggag                                       18629
//
ID   Copia-14_LH-LTR repbase;    DNA;    INV; 278 BP.
XX
AC   ADOQ01005500;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_LH_;
KW   Copia-14_LH-I; Copia-14_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-278
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005500; Positions     709     986.
XX
SQ   Sequence 278 BP; 47 A; 54 C; 46 G; 131 T; 0 other;
     tgttgagttt tatcaaactt ttattttttt tctagtctcg catgcatgtt ctttatttta        60
     ttttttagtg cattttgttt ttcgcgcctt ttgtttatat tcttgcaacc cgctgtgcgt       120
     cgccaacaca cgatagcgac ttccgttctt tctttttctt tctgttctgt gcatgatata       180
     ttctagttat atggcgtgca tcgagtatcg tcgcgttctg tgcgttgcgt aatattgcgt       240
     tctgtatatt ctttttcaat aaagttcttt tctaacca                               278
//
ID   Copia-14_LMi-I repbase;    DNA;    INV; 4192 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.11, Created)
DT   27-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4192
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3099-3099 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(466..822,666..1151,1130..1393,1443..1925,
FT                 1929..2264,2261..2905,2877..3101,3122..4189)
FT                 /product="Copia-14_LMi-I_1p"
FT                 /translation="MSKLEEINTKLKQAGEPLSEKMIITKVLMSLPERFKH
FT                 FRSAWESVPFEKQTLNELTSRLLIEEERNNQADQPAVALRVLAGSKKLPVT
FT                 LVVKRVILQRTVKAKRREKREAAIIVRKGVISGRSAGGSFASVSRQQKITC
FT                 YACGKEGHFAKDCKSKTKRETRSCNYCKKRGHLKADCRLLKSKEGKKTQDI
FT                 NAFMCTSEETDQEDYWFMDTGASEHMCNKRELFKELSKVGSPVKVTVGDGK
FT                 LLDVIGRGTVELYAWNTVKFIKTVLSGVLFVPELKFNLFRTKIQFVSVGTV
FT                 LDKGMHLVSNNEQCEFLNSKGEIRALSIHVNKMYRMLFSLNGTQSELSMVT
FT                 LTCAGKMQAAVDSKGISDFQLLVLMVKLSVWHKKLCHQSITHVKEFLSRRG
FT                 VAFIDDFVTCEECLAGKQHCLPFPVSTSRASAPLELLHADVCGPMEMCSLG
FT                 GARYFLLLKDDYSGFHKVFFMKQKNEVKGLIKNFIAKAERETGPKIKVLRS
FT                 ENGLEFMNADLRIYLNENGITHQRSTVYTPQQNGAEREMRTLVEAARSMIS
FT                 GMPKHFWAEAVNTAAYVLNRTGPSPARGKTPFEAFYDRELTLEDLKIFGIH
FT                 VSVLVPKEKRLKLDPKNKIGLFMGYDDDVKGYRIFIPSTKRVEMDVVFLPP
FT                 AVSERKKETDVPVVESDTICCDEENTDQTSESEGQKEVETRTQLVGEDRSQ
FT                 LGEEQENYKDRQRGEDSFEDVDVENVKSYNLRPRTNIQHPNYLEDYELGLL
FT                 TAVNDDDPSTYDEAMSSSDAENWKEAIARELQALEENNTWDYVCKPNDCNI
FT                 IDTKWVFRRKRDEKGNIVSYKARLVARGFQQTLTYSEIYSPVAKLTSVRCF
FT                 LVFLLQCDVFWFFCNDNNLPIYQLDVCSAFLYGEIVGDYYVSLPVGCFSKM
FT                 KGKVCKLKKALYGLKDSPKTGTLNSTQLEVILSIALYKDRNSSKTYLLVYI
FT                 DDLLIASTSQNEIDNLKLLLSGNFKMKDLGLIRNYLGMNIVQNLREGTVAI
FT                 SQSTYLEKILKVFDMYECNSVSTPIEENFDHSVLKRETSENESIEKRCRRL
FT                 IGSLMYAMLCSRPDICVALSILSRYQSCASQDLWSALKRVLRYIKGTLQLS
FT                 LLYARDKKCADTITGYVDSDWAGDRVDRKSTSGYLFKVLGCSVSWASKKQP
FT                 TVSLSSTESEFVALSMATSEACWLSNLYHNLSGSQTAVVLYEDNLPVISLC
FT                 KNPQFHHKLKHIDVKILFVREKVDAKKVVIKHISTNEQQADILTKPLGKIK
FT                 FEKFRALLGLFKCCSSVLVTPIINIEG"
XX
SQ   Sequence 4192 BP; 1361 A; 642 C; 1003 G; 1185 T; 1 other;
     ggttatgggc ccagatgcat aagtctgttt ttgtgagcag cggcagagtt ttcgtgtgta        60
     aaaacgattt tggcacaagt gacgtttgtt ttcatgtgac gcgatggaac agtatacaaa       120
     tacgtgcttg aagttatctg gaggggacaa ttgggctgtg tggaaattcc agatggaagt       180
     gatattaaga ggaaaaggtt ttttagatgt tgtaacaggc gttgcaatta agcctccgac       240
     ggagaaagta gctgaagaaa aggcgtggct ggaaaaggac gctaaggcgc aggaactatc       300
     gtgacgcgtg tggaggtagc gccgctcact cacctattat cctgtacgtc gtcagctggt       360
     atgtgggcta aatgaaaact gtatgaggag tccgcagtga gtattcatct acttcagcaa       420
     aagttttatt cactccaatt tggtgatgac tcagtggcta cagttatgtc gaagttagaa       480
     gaaatcaaca cgaaattgaa acaagcgggt gaaccacttt ctgagaaaat gataattacc       540
     aaggtgttga tgtcattgcc tgagagattc aaacattttc gttcggcatg ggagtccgtt       600
     ccctttgaga agcagacact taacgagtta acttcaagac tgctaattga ggaagagaga       660
     aataatcagg ccgatcagcc ggcggtagct ttgcgagtgt tagcaggcag caaaaaatta       720
     cctgttacgc ttgtggtaaa gagggtcatt ttgcaaagga ctgtaaaagc aaaacgaaga       780
     gagaaacgag aagctgcaat tattgtaaga aaaggggtca tttaaaggcg gattgcagac       840
     tgctaaagtc taaggaaggc aaaaagactc aggacataaa tgcctttatg tgtacaagtg       900
     aagaaactga ccaagaagat tattggttta tggatacagg tgctagtgag catatgtgca       960
     ataagagaga actgttcaag gaactgagca aagtgggaag cccagtgaaa gttactgtgg      1020
     gtgatggtaa gcttcttgac gtgatagggc gcggtactgt ggaactgtat gcgtggaaca      1080
     ctgttaagtt tatcaaaacg gtacttagtg gagtgctttt tgtgcctgaa ctaaaattca      1140
     atttgtttcg gtaggaactg ttttggacaa aggtatgcat ttagtttcga acaacgagca      1200
     atgtgagttt ttgaacagta aaggcgaaat tcgtgcactg tccatacatg ttaataaaat      1260
     gtatcgtatg ttgttttcct tgaatggaac acagtcagaa ctgtcaatgg ttactttgac      1320
     gtgtgcaggt aaaatgcagg cagctgttga cagtaaagga attagtgatt ttcaactgtt      1380
     ggtactgatg gtgtgagcga gttaacaaac tttagtcttg ttaatctgtc aaagagtgtt      1440
     gaaaactgag tgtttggcat aaaaaattgt gccatcagag tattacgcat gtgaaagagt      1500
     tcttgtctcg tagaggggtg gccttcattg acgactttgt cacttgtgaa gagtgtttgg      1560
     caggtaaaca acattgctta cccttccctg tcagtacgtc aagagccagt gccccacttg      1620
     aattacttca tgcagacgtc tgtggaccaa tggagatgtg ttcgcttgga ggagcgagat      1680
     atttcttgct tttgaaggat gactattcag gttttcacaa agtattcttc atgaaacaaa      1740
     agaatgaagt taaaggcttg ataaaaaact ttattgcaaa agctgagaga gaaactggtc      1800
     caaaaattaa agttctaagg agtgaaaatg gactggagtt tatgaatgct gatttacgta      1860
     tatatttgaa tgaaaatgga ataacccatc aaaggagcac tgtgtacaca ccacagcaaa      1920
     atggatgagc tgagagagaa atgcgcaccc tggttgaagc tgctcgttca atgatttcag      1980
     gtatgcccaa gcatttctgg gctgaagcag ttaacacagc ggcttatgta ctgaatcgaa      2040
     ctggtccaag tcctgccaga ggtaaaactc cttttgaagc cttttatgac agagaattaa      2100
     ctttggaaga cttgaaaata tttgggattc atgtgtctgt acttgtgccc aaagaaaaga      2160
     gactaaaact agaccccaaa aacaagatag gtttatttat gggttatgat gatgatgtga      2220
     aggggtacag aatatttata ccttccacaa agagagttga gatgtagtkt tcttgccacc      2280
     agcagtatct gaacggaaga aggaaactga tgtccctgta gtggagtccg atactatctg      2340
     ttgtgatgaa gaaaatacag atcaaacatc agaatcagag gggcagaaag aagtagaaac      2400
     gaggactcag ctcgtaggag aagatagaag tcagcttgga gaagaacaag aaaactacaa      2460
     agacagacaa cgtggagaag attcatttga agatgtggat gttgagaatg tgaagtcata      2520
     caatctgaga cccagaacaa atattcaaca tccaaattac ttagaagatt atgagttggg      2580
     gctgttgaca gctgtgaatg atgacgaccc cagcacctac gatgaagcaa tgtctagtag      2640
     tgatgctgaa aactggaaag aagccatagc aagagagctg caagcccttg aagaaaataa      2700
     tacatgggat tatgtatgta agccaaatga ttgtaacatt attgacacaa agtgggtttt      2760
     tagacggaaa agagatgaaa aaggtaacat tgtctcttat aaagctcgcc ttgtagctag      2820
     aggtttccaa caaacattga cttattcaga aatttacagt ccagtagcaa agttaacttc      2880
     agtgcgatgt tttctggttt ttttgtaatg ataacaactt acccatctat caactggatg      2940
     tttgtagtgc tttcctatat ggagagatag ttggagacta ctatgtcagc ttgcctgttg      3000
     ggtgcttcag caaaatgaag ggtaaagttt gcaaactaaa aaaggctctg tatggtttga      3060
     aggactcacc aaaaactgga acattaaatt ccacacagtt ataatggttt aggatttgtg      3120
     agaagtgatt ttgagtattg ctttatataa agacagaaac agcagtaaaa catacctact      3180
     tgtttatatt gatgatctgc tcatagcttc aacttctcaa aatgaaattg acaatttaaa      3240
     gttgttatta agtggtaact ttaaaatgaa ggatttaggt ctgattagaa actacttggg      3300
     aatgaatatt gttcagaatt taagggaggg aactgttgct atctctcaaa gtacctatct      3360
     tgaaaaaata ttaaaagttt ttgatatgta tgagtgtaat tctgtttcaa ctcctattga      3420
     ggaaaatttt gatcacagtg tgctgaaaag agaaacatct gaaaatgaaa gcattgagaa      3480
     aagatgtaga agattaatag ggtcactgat gtatgccatg ttatgttcaa gaccagatat      3540
     ttgtgtagca ttaagtattc taagcagata ccaatcatgt gcaagtcaag atttatggag      3600
     tgctttaaaa cgtgtgttgc gttacattaa aggtacccta caacttagtc tgttatatgc      3660
     tagggataaa aagtgtgcag ataccataac tggttatgtt gactctgatt gggctggtga      3720
     cagagtagac agaaagtcca caagtggtta tctgtttaaa gttttgggtt gtagtgtttc      3780
     atgggcatct aagaagcaac ctacagtgtc cctgtcatca acagaatcag aatttgtagc      3840
     cttaagtatg gctactagtg aagcctgttg gcttagtaat ttgtaccata atctttctgg      3900
     cagtcaaacg gctgttgtac tttatgaaga caacttacca gtaataagcc tttgtaagaa      3960
     cccacagttt catcataaac ttaagcatat agatgtaaaa attttatttg tcagggagaa      4020
     agttgatgct aagaaagttg tgataaagca cattagcaca aatgagcaac aagctgatat      4080
     cctgacaaag ccacttggga aaattaaatt tgaaaagttt agggccttgc taggactttt      4140
     taagtgttgt agttcagtcc ttgtaacacc aataattaac attgagggag gg              4192
//
ID   Copia-14_LMi-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.11, Created)
DT   27-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-14_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-225
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3100-3100 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 225 BP; 52 A; 32 C; 39 G; 102 T; 0 other;
     tgttaaaggt acaatgttaa tgttattttt cttcaaagca aagacactaa ttatgatctt        60
     ttcttatgtt aacttctgag gtgtgttttg gttcttgtgt agcatctgtg ttttttttcg       120
     tgtgttttgt tgtcatccgc catcggagtg tatcgtaatt tatttttgta ataaactctg       180
     caaaatcaga cttatttcga gtttctttta ctgcatttgc taaca                       225
//
ID   Copia-14_SI-I repbase;    DNA;    INV; 4262 BP.
XX
AC   AEAQ01018334;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_SI_;
KW   Copia-14_SI-LTR; Copia-14_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4262
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018334; Positions     366    4627.
XX
CC   Positions [1534-2061] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..4260
FT                 /product="Copia-14_SI-I_1p"
FT                 /translation="MNVSSLTRIETLNKENYDTWKMQMEALLVKNDAWVYA
FT                 NGECQKPVLAGDNSNESAVKTWVKNDNKAKSDIILAISPSELKLVKGCETS
FT                 REVWLKLENTYQSKGPARKATLLKQLTLQRMEDGGDVREHINKFFDAVDKL
FT                 NEMEVVINPDLLAIMLLYSLPPSFENFRCAIESRDELPNPDILRVKIMEES
FT                 DARKSESRNTVQNAMIAKKGAYKQWNSNAKKNASSESKEKFKFQCHRCRKF
FT                 GHKSAECRSKSEKNSQAAKNTEDISLRASEISRVGDTAMTGSQIREEAWCL
FT                 DSGASSHLCKELQDFTETHKVARGELSLANNSSTEIMARGTALFATEVYGK
FT                 TNNVYLKDTMYVPDLRSNLLSVGKITDNNYDVIFKKDVALIVDYEGNTKLI
FT                 AERKGGLYFVREDQRQECKAISEPDKRSSGTLENWHRRLGHLNIRDLKNAQ
FT                 RNGSLIGLNFNQFDDNFNCDVCVKGKMTRTPFPKRSNRRTESLDIIHSDVC
FT                 GPMRVESMGKAKYYVTFIDDNSRWCEVRFLKSKSEVFEKFKEFQRVVENQK
FT                 GRKIKHLQSDNGGEYRSREFDDHLKECGIVRRLTIAHNPEQNGIAERKNRT
FT                 LLDMARCLLIQSGLPPSFWAEAISTANYIRNRCPTESLGGNTPFEVWTGEK
FT                 PDVSNFKEFGCPVFCLDRNTAKGKFDDRCKRGVFLGYSEQSKGYRVWIPDE
FT                 RKIEVTRDVAFQEAPNVPPEEYEDFSPENNIEDTETEPKDSLRREVVIENL
FT                 SLEDTTDDTLLDEGENSEVEELNDDVISDDDLRGENSPPIACRAPGRPRII
FT                 RTGSRGRPRKLFQSRYADASGVEAESVLLSEIPIEQAVVGPDSDEWYDAMA
FT                 SELKSIIKNDTWTIVERPKDAEVIKSRLVLRNKYKPNGTIERRKARLVARG
FT                 FAQRPGVHFNQTFAPVARLSSIRLLVGIAAHHGMKIHQLDVTTAYLNGKLE
FT                 EELYMEPPRFIIDALKRLIEKETRSDITVKAMTMSEELSTGEKVCLLKKSL
FT                 YGLRQAGRNWHETLSGALRKIGATPTNADPCVYRLGRGEDIVLIAAYVDDM
FT                 LIASKSAKKIQEVKTSLALEFDVKDLGEIKHCLGIEFTQCGGTISMHQSGY
FT                 IKDVLSRFGMSDCKPVSTPMDSNVKLVKPEENSNTQVADAPYRELVGALMY
FT                 LAVSTRPDIAFAVSSLSQFNDSYDQTHWTAAKRVLRYLKGTMNLGIVFKPT
FT                 TDPLRCFVDSDWASCPTDRRSYTGYITVLSNGPVSWEARKQRTVALSSTEA
FT                 EYMGLTEAAKEAIHLRGFLTELEFKDLTNVVIYNDNIGAQRLAENAVFHAR
FT                 SKHIDVRHHFIRDALKSDSLKVKYVPTEDMMADLLTKGLPGPKHKRCVELL
FT                 GLGPPQVSIEASTHVSRGS"
XX
SQ   Sequence 4262 BP; 1320 A; 944 C; 1080 G; 918 T; 0 other;
     caggttatgg gcccagacac ccgaaaagct cacaatcgaa acgggaattg actgaggagc        60
     gaaatcaacg tgtagaggtt agttttctcg caactcgtac aatcgtgatt aacgatgaac       120
     gtttccagct taacaagaat cgagactctg aataaggaga actatgatac ctggaagatg       180
     caaatggaag cattactggt gaaaaacgac gcctgggtat acgctaacgg cgaatgtcaa       240
     aaacccgtgc tcgcaggcga taactctaac gaaagcgcag tgaaaacgtg ggtaaagaac       300
     gataacaaag ccaaatcgga cattatttta gcaattagcc catcggaact caaactggta       360
     aagggatgtg aaacgtctcg cgaggtatgg ttgaagctgg aaaatacgta tcaatctaaa       420
     gggccggcca ggaaggcgac actgctcaag cagctcactc tacaacggat ggaggacggc       480
     ggcgacgtgc gtgaacacat caacaagttc tttgatgcag ttgacaagct gaacgagatg       540
     gaggtcgtaa taaatcctga tttacttgca attatgctgc tgtatagttt gcctccaagc       600
     ttcgaaaact ttcggtgcgc tatcgagtcc cgagacgaat taccaaatcc ggacatactt       660
     cgcgtgaaaa tcatggagga aagtgacgcc cgaaaaagtg aatcacggaa caccgtacag       720
     aacgcgatga ttgccaaaaa gggggcttac aaacagtgga actcgaacgc gaagaaaaat       780
     gcatcgtcgg aatctaaaga aaaattcaaa tttcaatgtc accggtgcag gaaattcgga       840
     cacaagtcgg cggaatgtcg aagcaagagc gagaagaatt cacaagccgc taagaatacc       900
     gaagacataa gcttgcgtgc ttctgaaatt tcaagggtag gagatacagc catgactgga       960
     agtcagatcc gagaggaagc atggtgcctg gatagcggcg cctcttcaca cctttgcaag      1020
     gagctgcagg actttacgga gactcataaa gttgcgcgtg gagaattgag cttggccaat      1080
     aactcgtcca ctgagataat ggccaggggc acggcgttat tcgcaacaga agtttacggt      1140
     aagacaaata acgtttattt aaaagacaca atgtatgttc cagacctacg ctcaaactta      1200
     ttatccgtcg gaaaaattac ggacaacaat tacgacgtaa tattcaaaaa ggacgtagcc      1260
     ctgatagtcg actacgaagg aaacacgaaa ctgatagcgg aaagaaaagg aggtctatac      1320
     tttgtgcgcg aagatcaacg acaggaatgc aaagccattt cggagcctga taagagatcc      1380
     tcgggaacgt tagaaaattg gcatcgacgc cttggtcact taaacatacg agatctcaag      1440
     aacgctcaac gtaacggatc tctgattgga ctgaatttta atcaattcga tgacaacttt      1500
     aattgcgacg tgtgcgtaaa agggaagatg acaagaaccc cctttccaaa gaggtcgaac      1560
     cgacggacgg aatcgctcga catcatacac tccgacgtgt gcgggccaat gagagtggaa      1620
     tcaatgggta aagctaaata ctacgtcacg ttcatcgacg acaattccag atggtgcgag      1680
     gtacgatttt taaaatcgaa aagtgaagtt tttgagaagt tcaaggaatt ccaaagagtc      1740
     gtggaaaatc aaaaaggaag aaaaataaag cacctccagt ccgataacgg aggagaatat      1800
     cgaagcaggg aattcgacga tcatctaaaa gaatgcggca ttgtcagaag gctcaccata      1860
     gcacacaatc cggaacaaaa cggaattgcg gaaaggaaga accgcacact tctcgacatg      1920
     gcccgatgtc ttctgattca gtccggtctt ccaccgtctt tctgggcgga agcgatttcc      1980
     accgccaact atattcgaaa tagatgccca acggagagtc tgggcggaaa tacgccattc      2040
     gaagtctgga caggggagaa accggatgta agcaacttca aagaattcgg atgccccgtt      2100
     ttctgcctcg acagaaacac agcaaaggga aagttcgacg atcgttgcaa gagaggagtt      2160
     tttctgggat actccgagca gtctaaaggt taccgcgtgt ggatccccga cgaaagaaaa      2220
     attgaagtca ctcgggatgt agctttccaa gaagcaccca acgttccacc tgaagaatac      2280
     gaagatttta gtccggagaa taacatcgaa gatacggaaa cagagccgaa ggattcattg      2340
     cgccgtgaag tcgttatcga aaacctatct ttggaggata ctactgacga tacattactc      2400
     gacgaagggg aaaacagcga agtcgaggaa cttaacgacg acgtgatatc ggatgatgat      2460
     ctccgtgggg aaaactcacc gccgattgct tgcagagcac ccggacgtcc tagaattata      2520
     cgcactggat caaggggaag gcctcgtaag ttatttcaat cgagatacgc cgacgcctct      2580
     ggcgtggagg cagaatctgt tttgctttca gaaatcccta ttgagcaggc tgtcgtcggt      2640
     cctgactctg acgagtggta cgacgcaatg gcctcggaat taaaatcgat catcaagaac      2700
     gacacttgga caatcgtcga acgccctaag gacgctgaag tcattaagag tcgattagta      2760
     ttgaggaata aatacaaacc gaacggaacg atcgagagaa gaaaagctcg cctcgtggcc      2820
     cgaggctttg ctcaacgtcc gggagttcat ttcaatcaaa ctttcgctcc tgttgcacgc      2880
     ttgagttcaa tccgacttct tgtggggatt gcagctcatc acggaatgaa gattcaccaa      2940
     ctcgacgtaa ctaccgctta tctaaatggt aaactcgagg aagagctgta tatggaaccc      3000
     ccgagattca tcattgacgc cctaaagcgt ctgatcgaga aggagactcg aagcgacatc      3060
     accgtcaagg caatgactat gtcggaggag ctgagtaccg gcgaaaaagt gtgcctctta      3120
     aagaaatcgc tttacggtct tcgtcaagcc ggaaggaatt ggcatgaaac gttgagcgga      3180
     gcgctgagga aaatcggggc aactccgact aatgcggacc cttgtgtata cagactcggg      3240
     cgaggggaag acatagtact tatcgccgct tacgtcgacg atatgttaat cgcttcgaaa      3300
     agtgcgaaga agattcagga agtcaaaacg agtttagcac ttgaattcga cgtaaaggat      3360
     ctcggcgaga tcaagcactg tttaggaatt gagtttacac aatgcggagg cacgatatct      3420
     atgcatcaat ctggttatat caaagacgtc ttaagtcgtt tcggaatgtc cgattgcaag      3480
     cccgtgagca ctccaatgga ctccaacgtc aaactagtga aaccggagga aaactcaaat      3540
     actcaagttg cggacgctcc ctatagagag ctggttggag ctttaatgta ccttgccgtt      3600
     tctacgagac cggacattgc gttcgcggtc agctcgttga gtcagttcaa cgatagttac      3660
     gatcaaactc actggaccgc tgccaagaga gtgctgcgtt atttgaaggg cactatgaat      3720
     ctcgggatcg tgttcaaacc tacaaccgac cccctgagat gcttcgtcga ctctgactgg      3780
     gccagttgcc ctactgacag gcgttcgtat acggggtata tcaccgtttt aagcaatgga      3840
     cccgtatcct gggaagccag gaaacagaga accgtcgctc tatcttcgac cgaagcggag      3900
     tacatgggac tgacggaagc cgcaaaggaa gccattcacc ttcgcggctt tcttactgag      3960
     ttggaattta aggatcttac aaatgtcgtc atctacaacg acaatatagg ggcgcagaga      4020
     cttgccgaga acgcggtgtt ccacgcaagg agcaaacata tagacgtgag acatcacttc      4080
     atcagggacg ctttgaaatc cgattcatta aaggtcaaat atgtacctac cgaggacatg      4140
     atggcggact tactaactaa gggtttgcca ggtccaaaac acaagaggtg tgttgagcta      4200
     ttgggactcg gaccccctca agtcagcatt gaagcttcta cccacgtatc gaggggaagt      4260
     at                                                                     4262
//
ID   Copia-14_SI-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   AEAQ01018334;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-14_SI_;
KW   Copia-14_SI-I; Copia-14_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018334; Positions     157     365.
XX
SQ   Sequence 209 BP; 44 A; 58 C; 37 G; 70 T; 0 other;
     tgggaattgc gagacgtggc tttagatttg cgtcgccatc ttgctaggga cttgttttct        60
     ctctagtctt cgccatctac atattttcta tgttccacac ttacgcgcca ctctgtgcac       120
     gcgctgtatc tctcctaaat aaattgtaat accattaatc acagtgtcat ccattaagag       180
     cctccacctg ctgcgattat ccgtcctca                                         209
//
ID   Copia-150_AA-I repbase;    DNA;    INV; 4205 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-150_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4205
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4205
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4205 BP; 1353 A; 775 C; 1075 G; 1002 T; 0 other;
     ggttatgggc ccaggacatt gaccgtaacg caaatccgaa tttggccgta acgtagttct        60
     gaagaagttt taagtttatc aaacggtaat tgtgaagatg ttctcgagcg ctggtagcgg       120
     aggatctgga gatgcagtat ccggtgcagt tcaatctgga tcaagggcag gaagtactgt       180
     ggatccgaga gtggttcgtg cgactggtag taatagcata tctctttcga tcgagaagct       240
     caaaggccga gaaaattacg cgtcatgggc gttcgccatg aagatgacct taatacgtga       300
     aggttcctgg tgcgctatta tgccaaagga gggtcaagtc gtcgatgaag atattcaaat       360
     gcgagcgtta tcaacaattt gcctcagtct cgaaaagact aactacagtc tagtcatgga       420
     tgcgaaggac gcacaagaag cctggaacaa gttgaagtca gcatttcaag acgatggaat       480
     ttatcggagg attggtttgt tgcagcaact aacgtcgata cggttggaga attttgaaag       540
     tacggaagca tatgtggatg cgttgttctc aacaagtcac aagctagcag aaatcaagtt       600
     ccccgtagcc gatgagtggt tagcgtctct attattgatg ggactaccca agtattatgc       660
     tccgatggtg atgggtttag aagcgtctgg acaagctttg aaggcagatg cagtgaaagc       720
     gaaaatcctg caagacgtta aggtgaaaca tggaccacga agcgcaagag atgagggagc       780
     attctacagc ggagcggagc gagaacacca accccagcgt cgtaagaagc aatcaacaag       840
     agtcaaagag gatcgagcgt gctataattg tcagaaggta ggacattacg cggcaaattg       900
     tcccgagaag cctaaccaga agagcagcaa gggacgagca atgtgcgcag ttttggcagt       960
     cggtgacgtg gaccaaggag aatggtattt cgactctggt gccaccacac atatggcaaa      1020
     acctggatgg aatctacacg gtaagcagga gatttcttgt caagttagta cagcgaacaa      1080
     aaccagtatg atggccagag tcaaaggcgt cataagtctg gattgtgttg aaggccctgt      1140
     ggatgtacaa gaagtcctag aagttccgga tttggcagct aatcttttgt cagtcagcaa      1200
     gatatgcagc aaaggtttca cggtgaagtt cacagcaagt ggctgtacag tgctggatga      1260
     aaatggacaa gtttttgcgt cgggaacagc cgaaggagga ctatatcgat tgaatcggca      1320
     ggtacaaaat gcgtttttgt caagtgagtt ggaagtatgg catcgaaggc ttggtcacct      1380
     gaatgtgcag agtttgaaac aactgaagca gatggtcact ggcttccaat tgaacaagat      1440
     ggagaatttg aattgcgtag catgttttca aggcaaacat tcccgagacc catttccaaa      1500
     cagtgaatcc agagcaagca agccgttgga gctcgtacat acggatttat gcggaccatt      1560
     tgaagtacct tcgttggccg gtagtcgata tttcgttagt tttattgatg atgctactag      1620
     gaaagttttt gtgtataccc tgcggaccaa agatcaagta tatgaagctt acgaagattt      1680
     taaagcaatg gttgaacgac aaactggttt caagttgaaa attttaagaa gcgacaatgg      1740
     acgagaattt atcaacggtc ggtttgaaga gagtttgagg cttgatggta tccggcatca      1800
     gaaatcttgt ccgtacacac cagaacagaa cggagtggcg gaaagaatga atagaacaat      1860
     tctggagaaa gctcgaagca tgttgaatga cgcaaaaatg cagaagaaat tttgggctga      1920
     agctgtgaat actgcggtat atttgatcaa tcgcagccca acacgaacgt tacatggtaa      1980
     aactccagaa gaagcgtgga cgaataagaa gccgtacatt ggacatttga agatttttgg      2040
     ttctgttgcc atggtgcatg ttccgaaaca gaaaaggttg aagctggatc cgaaatcaac      2100
     gaaatgtgta ttcgtcggtt atgcagatga tgttaaaggc taccgactgt acaacccgga      2160
     gaatggaggg attattatta gcagagatgt gaagatactc aatgaagatc aatgcaatgg      2220
     agaaatagcc aacagagatg ataaggtaga ttttttggaa attgaatttt ctgacgtgat      2280
     tgacgaactg cgagccccag agatgctgga aggagaacag gtaaatgaaa ttgaaccgat      2340
     agcaaatgaa gaagagatat ccaacgcagc aaatgatgat ggggaagatt ctagcgatac      2400
     cagcagcagt tcagggaacg attttgaaga tgctagcgac cagattgcgc tcccaccgca      2460
     atcagttaga ccagctttcc aagagcatga gtttaggcgc agcggtcggg agcgccgcca      2520
     cccaggcaag tatactgatt ttataactta tagtacgtat actggccaaa ttgtatctca      2580
     aaacccacag tcgacggtca gaatcacaaa cggtaactct acaatgaaca gtatcgagac      2640
     aatgagcgat ccaaccacct atgaagaggc attgagcaga ccagaccgga agctatggct      2700
     cgaggcgatg caggcggaga tcgttgcact gcagtccaat caaacgtgga tcctggaaga      2760
     cttaccagac ggagcaaaag ccatcaagaa taaatgggtt tttaaaataa aacgaggacc      2820
     agatggaaaa gttgactgct ataaggcacg tttagtggtc aaaggatgct cacagaggcc      2880
     aggcattgac tatgatgaag tgtacgctcc ggtagtgcga tattcgacat tacgatattt      2940
     gatggcatta gcggtaaaat tcgatttgga ggtagatcaa atggatgcaa tcacagcatt      3000
     tctacaaggt aagctaaaca atgaagtaat ccatatgcag cagccagagg gatttgtgac      3060
     ggatccgacg aaggtgtgcc gacttcaaag atcgctttac ggcctcaagc aatctagtag      3120
     aatatggaat cagcagcttg ataaaacgtt acgagaattt ggactggaac aatcaaaaac      3180
     ggatccttgc ttgtactatt caattgaagg aaagaatatg ctgtttatta caatttacgt      3240
     agacgatttt cttatattca ctaatgacac aaacatgaag aaacgcttga agaaattctt      3300
     gtgtaaccga tttcgcatga aggatttagg tcaagcgaag tattgcttag gactacaaat      3360
     caccaggaat gaggaacgag gagaattatt gttagaccaa cgtaaatata ttgaagacgt      3420
     actggacaga ttcaatttgg caaatagtca tcccgtttca acaccattcg aacctagcga      3480
     gcgtttggac aaatcaatgg ccccgaaatc agaggaagaa attgaagaaa tgaaaaaggt      3540
     tccatacaaa gaagctgtcg gatgtttgca atacatatca caagccacgc gtccggatat      3600
     ttcctatgca gtcaacgcag ttagtcaatt tagtagcaat ccaggtcaaa aacattgggc      3660
     ggccgtcaaa aggattttcc gttatttgaa gggaacaatc aacaacaagc tctcgttcaa      3720
     caagaaaggc aacgatgaaa tcattggctt caccgatgca gattggggag gagatatgga      3780
     cactcgacga tcaactacgg gatacgtttt catgcttcaa ggtggagcga tttcatggaa      3840
     tgttaaaagg caaccaacgg tagctttatc atcgtgcgag gcagaatata tggcgttatc      3900
     acgaacgatt caagaagcgt tttggtggag aaatatgctg aagcaaattt ttggagaaag      3960
     acaaatcaag attttctgtg ataatcaatc tgctatcgcc atagccaaaa atggaagcta      4020
     caaccctagg acaaagcatg tcgatatacg ttttcacttt gttcacgatg ctattgaaaa      4080
     tggttcagtg gtaatcaatt acgtgaatac taaggaccaa gccgcagatg gatttaccaa      4140
     gcctcttgta caatccggag tcgctaccat gaaaaggatc atcggaatca aggattaggg      4200
     aggaa                                                                  4205
//
ID   Copia-150_AA-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.04, Created)
DT   13-DEC-2018 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-150_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-122
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-122
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 612-612 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 122 BP; 37 A; 24 C; 18 G; 43 T; 0 other;
     tgttagcatc aagtaatcca tgacgacctt agtaaccgaa gtttgttagt tgtaataatc        60
     aataaaactt ttcattcgct ttccaacgtt gaaccctatc agacgtgttt ttacttacga       120
     ta                                                                      122
//
ID   Copia-151_AA-I repbase;    DNA;    INV; 4144 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.08, Created)
DT   13-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-151_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4144
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4144
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4144 BP; 1110 A; 870 C; 1216 G; 948 T; 0 other;
     ggttatgtgc ccagcaaaaa tcggtccggt ttcggagtgt gcgaaaacga aaaaccgcgt        60
     ggcagtgaaa attttcgtcg ggaagttttc gcgttgattt tcgagtgctt tgacctccga       120
     tcgcgcatta tggaggaaga caagaagatt tatctgttcg atggctctaa tcacgcgaat       180
     tggagtttcc gcatggaagt gcacctcgag gaactgggtt tgctcgattg catcagttct       240
     gaggtggaag cggtggcgga gctccaagtg cagccaacgg attcggctga agtgaaacgc       300
     gacaaggaga agaaaatggc ggatcggctg aagcaaaacg tcaaatgcaa gtcggtgctc       360
     atccggaata ttgcggattc gcaacttgag catatcaagg ggaagcgaac tccggcacaa       420
     atctggtcga ctttgcaaaa cacgtttgcg cgaaagggaa tctccggcca attctatttg       480
     ttgaaaaagc tttcggccat gaagtatgac gagtccacat ccctgcaaac gcatttgttg       540
     cagttcgaac gtatggtgcg cgatcttgat tcggcgggga ttaaactgca agagtgttta       600
     gtggtgtttt atttgttgca aacgatgccc cggtcgtatg ggcagctcgt gacggttctt       660
     gaaacccttc ctgccgaaca gtgtaccctc gagttcgtga aatcgcggtt gctaagtgaa       720
     agcgtgaaac gtgaaaactg tgatgtgggg tcgacaggag atgactcgac ggcgttctcc       780
     gggaaaagtg gcaaccctcc gaagtacaag tgttacgcgt gcggaaaagt cggccacaag       840
     cgctctgagt gtccgtctca caagcaatcg gattcagcga agaagaacaa gcaaaagaag       900
     aaagaaaagg ctcattgcgg cgagtcagaa gtgattttcg tcagtgattc gttaagtgct       960
     agcgcggaat gcacccaatc gaagtggatt ttggattctg gggcctccga ccatatggtc      1020
     tgttgtgctg actggttacg tgaggtcaag aaactggaag tgccggtgaa aatccaggtg      1080
     gcgtcgggtg aaacattgtt gagccgttac actggaaagg tggacatggt agccatggtt      1140
     aaaaagcgac aagtgaagtg tgttgttgaa gatgtgctac tggtacccgg tatgaaatac      1200
     aacctgtttt caatccggcg cctggaccag ttgggaatgg aggtagtgtt tgtgaagaac      1260
     gaagccctga tcaaacggaa cggtgaagtg gtatgctgcg cgagccggca agatcggttg      1320
     tatgagctga acgtcgagat taagaagcaa gtgaaatcgg aagtattgtt gagtgttacg      1380
     cccatgaacg aaattgaact gtggcacagg agatatgggc atatcggtaa gagtggactg      1440
     tcgaagctga taagtggaca aatggtgaat ggccttgagc tgaagaaaag tgttgaagcc      1500
     ggtggcgccg tgtgcgcccc ctgcatgaaa ggtaagcaga caaggaagcc gttcaagcag      1560
     atgccgttac cacgaagctc tcgacccctc gaactgatcc acagtgatgt ttgtggcgcc      1620
     atgaccccaa cagcctggaa cggtaagcga tttttcatta ctttcatcga cgatttcacg      1680
     cactttagtg cggtctattt cttgcgcaca aaagatgaga cactggatgc ttttcaaacg      1740
     tacgtgtcta tggctgaggc acagtttgat agccgcgtta gccgcctgag atgcgacaac      1800
     ggcggcgagt atatcggcgc agatttccag aagttttgtc gcaccaaagg catccaagtt      1860
     gaatacaccg ttccctacac accagaacag aacggtgtta gcgaaaggct taatcggacg      1920
     atcatggata aggccagatc aatgattgag gattccggca tgagtaagat tatgtggtgc      1980
     gaggccgtcc tgacggccgt atatttgatc aatcgtagtc ccactgcagc tattttagag      2040
     aatcaaacac cgtacgagaa atggtacggc cagaagcctg acatgtcaaa gttgagaatc      2100
     tttggcagca aggccttttg cctcataccg aaagagaaga ggaggaagtt agattctcgc      2160
     agtcaagtat gccgtttagt tggatatggc gtgaacggat accgagtgtg ggatggtcgg      2220
     aaagtattcc ttgctcgcga cgtcgtcatc gaagagtcac cgttagcaga acaggttcga      2280
     ggggtcgagg cagagcatga ggagaactcg agtgatcgcc gtcagcttgc tggacccgtc      2340
     tcgtcggatc ctgctgtgga agagaacgcg gaacctcgcc ctggagctgc tgaagccagg      2400
     ggcggtgaag aatacggtgc ggaaggtttt gatgctgaga acgatgaagc aggcgctgag      2460
     gaggatgctg atcagcagtc ggacggatcc ggcgctttac gtaggagtga acgtgtgcgg      2520
     aacccaccat ccaagctaaa cgattacatc tgtaatattg ctttcgcgtt gaatgctgag      2580
     agttacgttg aggacatagt tggcatcgat gatctgaaaa ggatggaaga ttggcctgac      2640
     tggaaatgtg cgatcgagga ggagttaaac tcgttggctg aaaacgatac gtggcaacta      2700
     gttgatcttc ctcctgggcg caaggccatt gataacaagt gggtattccg gttgaagttg      2760
     aactcggacg gaagcatcca gaaacgcaag gcaaggctgg tggcgaaggg gttcagccag      2820
     cggtatgggt ttgatttttc tgaaacatac gcgccggttg ccaagatgtc aacagtgcgg      2880
     acgatgctcg ctctagcaaa tcagcacaat ctcgtggtcc atcaaatgga cgtaaagtcg      2940
     gcattcttgc acggtcgact aacggaggac atatacatgc gccagcccag aggatttgag      3000
     gaggggagca aagtttgtaa gttgcgcaaa tccatctatg ggctaaaaca agcgtccaag      3060
     gcctggaacg atcggttcaa ccagtttgcg gcgaagatcg gttttcagcg gtgtgaggaa      3120
     gatgcttgtt tgtatgtgcg acacggaaag tccggccctg tctatttgct cttgtacgtc      3180
     gacgatatat tgatcctatc gaagtccttg cgtgaggttc agatcgtcaa gcagttgctg      3240
     cggcaagagt tcaaaatggt tgacctgggt gaagccgaga tgttccttgg actaaaaatc      3300
     gaacgggacg ccaaggaagg tgtgatcaag ctgagtcaac caggctatac ggaagcagta      3360
     ctcaaacgat ttggaatgga gaaatgcaag ccggcgagta ctccaattga ggcaaacttg      3420
     cagctgaaga aagtcgaggt gccggcgaaa ttggacaagc cataccggga gttaatcggg      3480
     tgtttgacct acctggtagt cacctcgcgt ccggacttga gtgctgcggt gtcatatttc      3540
     agccaattcc aatgtaatcc aacggaagat cactgggctc atgcaaaacg gatgcttcgc      3600
     tacctgcgtg gcacaacaag tcatggcctg gtgtacagga agagcgagtc agcagttggg      3660
     cagattgtag gtttcgctga cgcgaactgg gcgacggata caaacgatcg acattctgtg      3720
     tccggtcatc ttttccaagt ctacggagca acaacggcat ggagcacaag gaagcagagg      3780
     acggttgcgt tatcatcgac ggaagccgaa tgttcggcat tggcagactg cgtctgcgaa      3840
     gcactttggt ttcgaaagtt gtttgctgaa atcggtttac tggaggagaa acccatcgac      3900
     atcttcgaag acaaccagtc tacaattgcg attgctgaat ctgacgcacc atcgaaacgg      3960
     ctcaagcaca cagaagtgaa aatccagttc atcaaggaat gtgtccaaaa tggtaaggta      4020
     gctgtgaagt acatacccac cggtaatcaa ccagcggaca tgttgactaa aggtcttgta      4080
     ccagcggtgt tcaacaaaca ttgtttgaag ctagggttgc aacagtgatg agcttaagga      4140
     gggg                                                                   4144
//
ID   Copia-151_AA-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.08, Created)
DT   13-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-151_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-194
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-194
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1425-1425 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 194 BP; 60 A; 37 C; 33 G; 64 T; 0 other;
     tattaagatt aacctaatca cagtgggtaa ttgccaagaa taaaatatgt atccttctat        60
     cagtgtgtaa cacacgatta ctgacagtta aatatgggta aattgaattg aacgtgtaac       120
     ccttcactag ttaataaacg ctctacgaaa cggacgtgtc tctgtgtttc tctgctgccc       180
     atattccttt gtta                                                         194
//
ID   Copia-152_AA-I repbase;    DNA;    INV; 4128 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-152_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4128
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4128 BP; 1228 A; 853 C; 1090 G; 957 T; 0 other;
     gttatgggcc cagtcgcgcg gttccctggt aacgtagttt gtttggcata gttcggatca        60
     agtcgaaaat tttcacgcgc aaggtgaaaa attcggaacg attgttcgtt tcgaaataag       120
     tatcggttac ggaattgcga ttcgaacgat cggaagcgga atggacgaag aaagaacaca       180
     acgggtatac ctcttcgacg gagccaactt ctcgaactgg agctttagga tggaagccta       240
     cctggaagaa ttgggactgg cgcactgcat ccggaaaagc ttggaagagg aagatttttt       300
     cgccgataac gagactgaca ctgccgagat gaagattcaa aaggaccaaa aacgtgaacg       360
     acgaagacag caagacgcaa aatgcaaatc catacttatc cacaagatcg cggactcgca       420
     tttggacttc atcaagggaa aggcttcacc aaaagcaatc tggtctacgt tggagcgact       480
     cttcgagaag aaaggtgtag ctggtatatt ctatctattg aagcaaatgt cggtcatgag       540
     gtacgatgaa tctcgccccc tggaagaaca cgtcgttgcc ttcgagaaga acgttcgtga       600
     cttggagtcg gctggtgtta aattcgacga gaaggtaata gtcttcaacc tgctgcaatc       660
     gatgcccaag tcctacgagc agctgataac ggtgctagaa accttgccag tggaacaatg       720
     ttctttggaa tttgtgaaga caagactgct gagtgaaggt atcaagcgac aactggttga       780
     agtacgttcg gaatccggca cggcgttttc tggaaaaagc ggaaaattta atttcaattg       840
     ttacgcatgt ggcaaatcgg gacacaagag agcagattgt ccgggaagcg gccgcaagca       900
     ggagtacaat ccaggaaagc tgtctggaaa gcagaagaag aagccaaggg agaaggccaa       960
     tgcggcagac acgcaacatg acatcgcatt tgtaagtatc aacgactcga atagcacgtg      1020
     tggcggaaaa ttccgctgga tactcgatag tggcgcatca gagcatatgg ttggagatcg      1080
     caagtacctc agcaatgtgt atcgcctgga acaaccggtg gttattacag tggcaaaatc      1140
     cggacatcag ttggtgagtg agtatgctgg ggaggtgcga atgcttgctg ctgtgggtga      1200
     taagcaactg cgatgcgtcg tctacgatgt tctgtatgtt ccggatttaa ccatgaatct      1260
     gttttctgtg aagaaaatcg gagaacgtgg aatgcgtact accttcacac gcgatgaagc      1320
     gtttatcacc aagactgatg gttcacgagt ctgcacggct acgaggagga ctaaactatt      1380
     cgagcttaac gtcgagttga ttccaccaag cgagtcggct ctagctactg attccaaaac      1440
     gcaaagaatt ctgtggcatc ggcgttatgg tcatattgga aactccggtc tggcgaagtt      1500
     ggttcgatgc aacatggtgg acggcctgga catcgagaag aacctggaat caagcgaaat      1560
     atgtgaatcg tgcatgaaag cgaagcaggt taaattgcca ttttcagaca caccgcgagc      1620
     tagatcaagt cgtccgttgg agttgataca caccgacgtt tgtggtccgt tccagccagc      1680
     tgcttgggat ggaggaaaaa tgttcgtgag tttcatcgac gatttcaccc acttcacggc      1740
     ggtgtatgtg atcaaggcga agagcgatgt tctagcaatg ttcaagaaat attcggcgat      1800
     ggcagaagca catttcgagc gcagggtagc acgagttcgc tgtgacaacg gtggggagta      1860
     tgtcaacgaa ggcttcatcc aattttgcga aaccaaaggg atcgtgatgg agacaacagc      1920
     gccttatacg ccacagcaaa atggcgttgc ggagcgcatg aaccgtacca ttatggaacg      1980
     atcccgtgca atgttagacg attctggatt caaacgatat atgtggaacg aagccgtaca      2040
     tgctgctgtt ttcgtgatca atagaagtcc tacgtcagcg ttacaagaat cagtgacccc      2100
     ttttgagaaa tggtatggac gtaagcctaa cgtgtccaac atgcgtgtat ttggaagcaa      2160
     agcatttatg cacgttccga aggagaaaag aagcaagctg gatgacaaaa gcaaggtgtg      2220
     ctattttgtc ggatacgctg taaacggata caggctgtgg gattccgaga agcgaaaagt      2280
     tgtggtctca cgggatgtca tcatcgaaga accgaaaccc aaattagcgt ccatatacac      2340
     gtcggaccac ctagtgtccg atagggaaat tgcgccggct gagaacgaag tagttgagga      2400
     agtaagaata cttgaagaag aagaggaaga caacgatgtg tacgaatcat tatcagaaga      2460
     tgaaaatgga gaagtagagc aggaagaaat tagagcagta agacgaaccg aaaggaagcg      2520
     aaagcagccg gatagatttt ccgattatca tttgtacgga gcgtttgcat taaatgctga      2580
     aagctatatt cagaatcttc ctgaaacgat cgacgaggca aagaagcgag acgactggcc      2640
     tgaatggcag ctagcgatca acgatgaact caaatcgctg gagaagaacc atacctggga      2700
     tttggtagat cttccagatg gttgccgagc aatgccgtgt aaatgggtgt tcaagatcaa      2760
     atacaacgac gataattcga ttagccgata caaagcacgg ctggtcgcaa aaggatgctc      2820
     gcagcgatat gggatggact atcgggaaac atatgctccg gtggttcgaa tgagtaccgt      2880
     tcgtgcgctg ctgtccgttg ctgttcaaag gaatttgcat ctacaccaaa tggacgtacg      2940
     aactgcattt ttgaacggta acttgaagga aactgttttt atgaagcaac cgccaggatt      3000
     tgagaggggg aagatggtct gcaaactcaa caaatcgcta tacggtttaa agcaggcgcc      3060
     tcggagctgg aatgagcggt tccacaaatt tatggtgaag cttggatttc aacgttcgaa      3120
     gtacgatagc tgcctctaca cgtacaccgg agaaaaggtc cgcatctacg ttgttctata      3180
     cgtggatgat attattctgg cgtctgattc cttggaacag ttatcacaca tcaagaagaa      3240
     cttggccgct gaattcgaca tggttgatct tcaagagctg aatcatttct tgggcctgcg      3300
     cattgaacac aacagaaagc aaggtacgtt atgcatcaat caaactaaat atgttctcga      3360
     tctgttgaag cgatttggga tggaattatg caaaccggtt tctacgccga tggagccaaa      3420
     tgccaagttg gtacagctgc aagatgatca ggaaccatac agatgtccct atcgagaatt      3480
     gacgggttgc cttacgtacc taatgttgtc atcacgtcca gatatatgtg cggcggtgaa      3540
     tgtcctcagt cgtttccaga atacaccatc agaagaacac tggaaagccc tcaaacgagt      3600
     tgtacgatac cttcaaggaa cgaaagacat ctcgctcgtc taccatcgta gcaaggacgt      3660
     cccactcatt ggatttgcgg atgcagattg gggcagtgat ataaatgaca gaagatcaac      3720
     atctggtttc tgcttcaaaa tgttcggcaa cgcagtaaca tgggttacac gcaagcaacc      3780
     aacggtgtcg ctatcctcaa ccgaggcgga atacgtgtca ctgagccaag caacatgtga      3840
     agcggtttgg cttcgtaatc tcgttacgga atttggagtt cagctggatt cacctttaat      3900
     catttacgaa gacaaccagt cctgtattca aatagcaaaa gaaccaaggg accagaaacg      3960
     actcaagcac attgacattc gttataactt cgttcgagaa cgcattgaaa accaagaaat      4020
     cgaggtgcag tacattccaa ccggggacca ggtcgccgat ctatttacca aaggtttacc      4080
     aacggatgta ttcaagaagc atcgccatgc actaggtttg agaggggg                   4128
//
ID   Copia-152_AA-LTR repbase;    DNA;    INV; 118 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-152_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-118
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-118
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1468-1468 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 118 BP; 39 A; 23 C; 18 G; 38 T; 0 other;
     tgttaagaag caaaccctag attagtaggc tatgaataag ttagttagtt acttaaagct        60
     atgttctgtt atcacttgcc aataaaccgt tgaaccatta acatcactct gctcatca         118
//
ID   Copia-153_AA-I repbase;    DNA;    INV; 4062 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-153_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4062
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4062
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1426-1426 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4062 BP; 1151 A; 772 C; 1150 G; 989 T; 0 other;
     ggttgtgggc tcaggtcgct ttgaaagtgc cgggatccga gaaaagtgtc gcgatggccg        60
     aggaaagtca aaatgatcgg tatcatatcg cgttgttcga cgggtgcaat tattccgcct       120
     ggaagttccg tatgacggtg ttgttggaag agcacgattt gcttgactgc atcgaacggg       180
     aactggcgga tatcgaggag atccaagaac tacaaacgga tagtgctgat gtgaaaaggc       240
     agaaggtgaa caagcgtgta ctgcgggaga aacaggaacg aagatgcaaa tcgctgttga       300
     tctccagaat ccatgatacg cagttggaat acgttcagga caaacgttcg cctaaacaag       360
     tttgggatgc cctgaagaga gtgttcgaga ggaaaagcat cgccagccgg atgcatataa       420
     agcggcaaat gctgagtatg cggttcgatg ggaatcaact ccaagaacat tttttgcgat       480
     tcgacaaact ggtgcgggaa tatcgtggca ccggtgcaga aatggacgat ttggacgtgg       540
     tctgccattt gctattgacg ctgggaccga atttttccac cgtagttacc gccctcgaaa       600
     ctatgccgga gcagaacctg acgatggaat tcgtcaaatg tcggctgcta gacgaggaga       660
     taaagcagaa gggagctggt atcgatttat gcactgagaa aaacgataca gcagcgttca       720
     gtggaacgaa atccggatcg tttcaatcga ggaaattacg gtgtttttat tgcaagaaag       780
     agggccataa aatgatcgat tgtccggaaa agaagaagaa gaaaagttcg ggtcagaaaa       840
     gccagcagaa ttttaaagca aatgtagctg catctgatga tcgaaatggt gttagttttg       900
     ttggggtcag tggcgatcta aagccaggga aagcgaagtg gttcattgac tctggcgcat       960
     ctgaccacct tgtgcgtgat cgggatttgt ttaccgaact tcatccgttg aaaaatccaa      1020
     tcgaaatcgc agtagccaag gacggtgaat cgattgaagc aaaacagtgc ggtacggtga      1080
     aagtgacgtc gttggtaaac ggaaaatcaa tcgattgcac tgtgaacaat gtgttatatg      1140
     tgccgcagct ccgatgcaat ctgttttcgg tcgtgaaggt tgaaaaggct ggcatgcggg      1200
     ttgtgttcga ggccggtaaa gcgatgattt acagtggttc cgaactagta gccactggta      1260
     cgcgccggaa caaactttat gaattggact ttcactcgtt ggagaacgac gatcacggat      1320
     catcgttgat gtcatgtggt cgtattcgga aggactacga gttgtggcac cgtcgttttg      1380
     gccacataag tgaaacgaat ctggaagcac tggctcgaag cggatcggta ataggcttga      1440
     agctgaatcc gaagaagaaa gaagaaatga ttgtgtgtgg accctgtgtc gaagcgaaac      1500
     agacgaagaa accgtttttg tctagtggtg aaaaacgttc gtcacgtgtg ttggagctta      1560
     ttcactccga cgtgtgtggt cccatcacgc cggtcggcct gtatggatcg aaatactttg      1620
     caacgttcat cgacgattgg agccatttta cggcggtata cttgatggac tccaaagacg      1680
     aagtgctgag ttgtttcgag caatatgagg cgttcgttac ggctaaattc gaaaggagaa      1740
     tatccagatt gagatgcgac aacggcggtg agtaccgtgg gaaacgtttc aagcagttct      1800
     gtaattcgaa agggatcgtg caagagttca ctgtgccata tactcctgag caaaatgggg      1860
     tgagcgagcg catgaacagg acgctagttg aaagagcaag ggctatgctg caggattcag      1920
     gggtcgataa gattttctgg gagcaagcca ttcagacggc tgcatatttg gtcaatagga      1980
     gcccgaccaa tgcactgagt tcacacaaaa ctccgttcga aatgtgggag tcacgaaaac      2040
     cagatgtttc gaaattgaga gctttcggat gtcgcgtgta tgtgcacgtt ccgaaggagc      2100
     ttcgaaagaa attagatgcc aagtcgtggc aaggagtatt cctagggtat tctccaaatg      2160
     gttatcgtgt ctgggattcg aggagcagga agattatcgt cgctcgtgat gtggattttg      2220
     ttgagactga agtgtcatcg aatgttgtcg ataaggcaaa tcgttttgat ggattgttgt      2280
     acgtgcctcg gagagtcgaa gagttgcatg cagatctgga aggcgaacca tcggaaaatt      2340
     atgaagcacg agaagttttc aacgaagaaa aagctagcgg tagaagttca gcagaaacgg      2400
     aaccagaaag tggtcgtcct aggcgcgatc ggagaccccc ggattggcat aaggattttg      2460
     aaaccgagta tgccggatat gctttgagcg ctctgaatta catcgataat attccaaaca      2520
     caatcgatga gctgaaacag cgtgaggact ggagtttctg gaagaaggcg attgaagaag      2580
     agatggactc gttgaagcgc aacgatacct ggacactgac ccctcttcca aagggtcgga      2640
     ctgcgattac ctgtaaatgg gtgtttcgag taaagcgtgg tagttgcgaa gcagagaaca      2700
     ggtacaaagc cagactggta gccaggggct tcagccagaa gaaggggttc gactacacag      2760
     aaacgtattc tccagtggcg aaactggata cccttcgaac tgttctggct gtggcaaatc      2820
     gagaacgtat gcatttacat caaatggacg ttaaaactgc gtttttaaat ggccagctca      2880
     acgaggaaat ttacatggct caaccagcag gatttgagca ggggaacggc ctggtttgtc      2940
     gcctgaatcg gtcgttgtat ggcttgaagc aagcgtctcg agcgtggaac gaacgattcc      3000
     atcgtttcat cgtgaaatta ggattcgtgc gcagtgagaa cgaccaatgt ctgtacgtgc      3060
     gaggcgaggg aagaaataag ctcatcgtcg tgctgtacgt tgatgacatc ttgctggcca      3120
     gttcatcttt caaggctttg gaaatcgtaa agcgtagttt ctgcgaggaa tttgaaatga      3180
     aagacattgg agaggtgaaa cagttccttg gaatgaccat tgaacgagat tcgtccagga      3240
     aactcatgcg aattcatcaa cgaagttatt tcgaaagtat gctgcaacgt ttcgaaatga      3300
     ctgaaagcaa gccaatttcc actccaatgg aaaatcgtct gcgattatcg aagggattgg      3360
     aggaccagag aacatcgaag ccataccgcg agcttgttgg ctgtttaatg tatgcttcac      3420
     tgacgacaag gccagattta tccgcagcgg tcaattattt tagtcagcat caggtatgcc      3480
     caaacgagga gcattgggtg caccttaagc gaatgcttcg ctacgtcaag gacacactgg      3540
     atgttgggct catgttcaag gacgatgatc gatctgtaat gttggaggtt tattcagatg      3600
     ctgattgggc caatgatgtg attgatcgtc gttctgtaac tggctgtatt ttcaaagtgt      3660
     atggctgcac tgtaagctgg ataacgcgga aacagcagac ggtgtcacta tcgtcaaccg      3720
     aagcagagct gtcggcattg tgtacggcgg cgtgtcatgt tttatggatg ttacgtgtgc      3780
     ttcaagattt ggggcataaa actacagagc cgatagttat taatgaggac aatcaatcga      3840
     cgattaaaat tgcggaggac tgtcgtgatc atggtcgact gaaacacgtc gacactaaac      3900
     atcatttcct gaaagatttg attcaacaag gagtgctgca gattaagttt gtgagatcgg      3960
     cagaacaaca ggcagatatc atgacgaaag gtcttcctcc agcaaccttt aaacagttgc      4020
     gatcaatgat aggactcgga agatgttgtg gttgagcagg gg                         4062
//
ID   Copia-153_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-153_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-186
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-186
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1469-1469 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 186 BP; 55 A; 40 C; 23 G; 68 T; 0 other;
     tgttgaaatg gcaaccacct cactatttat cgcctgaata ctaccctgga ctttatttga        60
     ctatccgcca tgtttttatt attatcaaaa caaaactcga atgaataaat atgtgtatca       120
     gtttatctac aagttaatcg cgtttaatcc gtttaatttc tcctggtcca tccgaaactt       180
     acttta                                                                  186
//
ID   Copia-154_AA-I repbase;    DNA;    INV; 4053 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-154_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4053
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4053
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1427-1427 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4053 BP; 1102 A; 873 C; 1208 G; 870 T; 0 other;
     ggttttgggc ccagaacaac ccaaaccaag aagattctcg aagccagtta aaatccggta        60
     cgatgggaga cgacgagaag ttcctcaaga tcaagccttt cgacggtacg ggtttcaaca       120
     attggaggtt ccgaatgttg gcattcctgg agcagttgga aatcgcgcac tgtgtcgaga       180
     aggcagcgga ggaggaagac ttctgggaaa tcccggaaac ggatacggcg gctgtcaaga       240
     aggggaagga ggaaaagaag gcgaaccgga agaagcagga caacaagtgt cgttcggtct       300
     tgatcggtgc ggtcgcggat agtcacctgg agtatatcaa ggacaagaag agtccgatgg       360
     aaatctggaa cgggctgcat gaggttttcg agcggaagag cttgacgaat cgtttcatgt       420
     tgaagcgcaa actgttggag atgaagcacg atgagcgttc gagtctggaa tcccactttc       480
     ttcgcttcga tcagttgatt cgggagctga agtcaaccgg tgcgaaaatg gacgaggaag       540
     acattgtgtg ccacctgatg ctcactatgc cggtttcgta cgagtcggtg aacacggcaa       600
     tggaggcggt ttcagagaag ctaaccctgg aattcgtgaa agggaagtat ttggacgttg       660
     aatcgaagcg aaagggaaga aactcgtcgg ccaatcaaga atcggacaac gttgcgtttg       720
     ctggtaagtc cggaggaaag tgccgtctga agtgcttcgg ctgtggcaaa ttcggccaca       780
     agcgagccga ttgtcctgaa tctgaactgc gtcaagagca gggtcggaac cacgagaaga       840
     agaaatctac gaaggtcagt gctgctgcaa aaactgtgtc gtttgttgcc gggtccgggt       900
     cagcttcgga tgagaaatcg cggagctggt acctggatag cggggcttca gaccacatgg       960
     cgaatcaacg agaactgttc caaaatctgg aggtgctgga agagcccgtc tggatcgcga      1020
     cagcgaagaa aggtgtcaac ctggtcgcta ggcaacgtgg agaaatcaac gtgtactcga      1080
     ctgtcgatgg taagcacatc catgtgcgta tggaaaacgt tcttttcgtt ccagagctga      1140
     cgctgaatct gatgtccctg cgtcggctgg aaagttcggg aaagaaagtg attttccaca      1200
     aaggcaaggt agtcgttgaa gatgccgatc aagatgtcgt agcaaccggc aagcaagttg      1260
     gtgtgctata tgcgatggac ttccagtacc tagcaacgcc aaacagtgct atggtaacag      1320
     gaaaggtaac caaggagctg gacttgtggc atcaacgcta tggtcacctt ggcaacggaa      1380
     acctgatgaa gcttatcaac cgaaaaatgg tggatggact cgatctggga agcagcgtga      1440
     agcctggatg ttcggagtcg atggtttgcg aaccatgtct tgctggcaaa caaactcgag      1500
     aatcgttcgt cagccgtgag ggaaagcgga caacccgtcc gttggagctg gtgcatagcg      1560
     acgtctgtgg tcccatctcg cctgtgtcgt gggacggcat gcaatatttc atcaccttca      1620
     cggacgactt cacccactta acggtcgtct acctgatgaa gtcgaaggat gaagcgctgg      1680
     agtgtctgaa gacgtacgag gctatggcaa cggcacattt ccaaactagg atgtctcgtc      1740
     ttcgctgcga caacggtggc gaatacagta gcaagcaaat gaagatgttc tgtcggcaac      1800
     gaggtatcca gttggagatg acggttccgt acacaccgga acagaatggg ctgagcgaac      1860
     ggatgaatcg aaccatcgtc gagaaggtac gggcaatgct ggctggaagc aatgttacga      1920
     agcgcctgtg gggcgaagca gtatatgcag cggcgtacct aatcaaccgc agtccgactg      1980
     ttgctgtgga tggtcatcgc actccctatg aagtctggaa tggaagaaag ccaaacgtga      2040
     gtaaccttcg aatttttggt gcagaatgtt tcgtccatgt cccgaagcag aagcggaaga      2100
     agttggatat gaagtccgaa aaggcgacct tcgtgggcta cgcaccgaat ggataccgtg      2160
     tttggaacgg aaagaaggta tttgtggctc gagacatcgt gttcaacgaa ggcaagacta      2220
     gcaacagtca atcggacgac agcaagaatg gcgaagatga agagctgatt gtgaaccaag      2280
     atccaatcgt cggtgaggaa ggaaatcaag atttgcctga gatcaacgat gagcacgaag      2340
     ctaccgacaa tgaagaactg aatgaaacgt tgcttgatga agctgctggc ggtaatcctg      2400
     atgaaaacaa ggtacgtaga agcggtagaa ttcgtgcacc tcctatctgg cacgaagact      2460
     acaatatttc ggcgttcgct ttgagtgccg aggagtacgt ggacaacatt ccaagcgaca      2520
     tagcggagtt gaagaagcgt gacgactggc cgctgtggaa ggaggcaatc gaagctgaac      2580
     tagcatccct ggagaagaac cgtacgtgga gcttgacgga gctgcctgct gggcgtcgac      2640
     ctgtaggcaa taaatgggta ttcactatta agcaagacgg tgaaggcaag atcgaccgat      2700
     acaaagcccg acttgttgcg aagggcttca cgcagacgaa gggcttcgac tattcggaaa      2760
     cgtattcccc tgtggcgaag atgacgacgt tgaggattct gttggcactg gcgaaccagc      2820
     gagacctgca cgtgcatcaa atggacgtga agaccgcgtt cctgaacggc gaactgactg      2880
     aggaaattta tatgcggcaa ccatcaggct ttgaggcggg aaacgatctg gtctgcaagc      2940
     tcaacaaggc gatttatgga ctgaagcagg catcccggag ctggaatatg aggttccaca      3000
     cgttcattac gagcatcgga ttccaacgaa gtcagcatga tcagtgtctt taccattggt      3060
     cgaagggaga ggcagtcgtt tacctcgtta tatacgtaga cgacatcctg attgctggga      3120
     attcgattct ggcgatcaaa catttgaagc aaaagctgtc aagagagttc gagatgaagg      3180
     acctggccga ggtgcggtgc tttcttggac tgaatatcaa ccgaaacaga gccgacggcg      3240
     ttatgacgat cgaccagaag cagtacgtga tgaagattct gcagcgtttt gggatggagg      3300
     attgtaggcc gtctgctatt cccatggacc ctcatctgaa gctgctcaag tgtgaagatc      3360
     cgacgcggtt cacgacgaag ccttacaagg agttgattgg gtgcttgatg tacctgatga      3420
     tcacatcgag gcttgatatc tgcgcggcgg taagctattt tgcgagtttc caatgttgtg      3480
     ccactgaaga acactgggct cacctgaagc ggattttgaa gtacctgcga gctactgtcg      3540
     actacaactt ggttttccgg aggtcgatgg agtcggaaac actttccgta tatgccgatg      3600
     cggactgggg taataatctg gacgaccggc gctccgtctc ggggtacgtg gtgaagctgc      3660
     atggagcaac gatctcgtgg gcaaccagaa agcagacatc ggtggcgttg tcgacgactg      3720
     aggcggagtt catggctctt tgccaagcca gctgcgaagc gatgtgggtg gtgaacctct      3780
     tgaagatgct tgatgtggaa gttgccttac cggtgactat ctatgaggac aaccagccat      3840
     gcattgccat ctgtaaagaa ccgagaaagc atagaaggat gaagcatatc gatatccagt      3900
     actttttcct gcgagacctg atccaagaga agaagattaa attacagtat cagccaaccg      3960
     aggaccaact agcggatctg atgacgaaag gccttcctgc cccgagattc agtaaactgc      4020
     gaacgatgct gggattgatc aattgaggcg gga                                   4053
//
ID   Copia-154_AA-LTR repbase;    DNA;    INV; 126 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-154_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-126
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-126
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1470-1470 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 126 BP; 42 A; 25 C; 17 G; 42 T; 0 other;
     tgttgaagta caatcgatca tagcaacctt ctgatattga atgtaagaga tcctgaaaat        60
     aaatttattc attcctttgt caaccaccaa ccagtaaagg tgtctttcat tttcactctg       120
     ctaaaa                                                                  126
//
ID   Copia-155_AA-I repbase;    DNA;    INV; 4157 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-155_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4157
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4157
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1428-1428 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4157 BP; 1163 A; 887 C; 1217 G; 889 T; 1 other;
     ggttatgggc tccaggcagt tgctaaggaa acggctctgt ttggtgaggt gaaaattttt        60
     tcaaacccga agcaaatttt ctgaagagat ggccgaagaa gaaaatggag ttcaagatgg       120
     ttccaggaat caagcctccg ttggaaatcg tttgccgggc agcacggtat cgttgccggt       180
     gcggcaagtt ttacgcggtt cggagaacta cagctcgtgg tctttcgcga ccaaaatgat       240
     cctgatcaag gaacgaacat ggtgcgcagt gaaggaccga caggatggtg atccggcggt       300
     aagcgacgag gtttccgagc aagctttggc cacgatatgt ctgaacatcg atcccaagat       360
     ttacggacta gtgcggaacg ccaaaaccgc aaaagaagcg tgggacaatt tgcgcaatac       420
     ctacgagcat agcggatcga cccggaagat tggcctgttg agaagattaa cgggaattcg       480
     actggttggc gctgaacggg atgaagaggt catttgccag acaactcagg actacgtgaa       540
     cgaactgttt acgacgagtc accagctttc ggaggtagga tttgaagtgg acgacacctg       600
     gctggcgagc ttgctgatga aaggtctacc gaaacagtac gaaccgatga tcctgggatt       660
     ggagtcgtcg ggtatgaagc ttacggcaga catcgtcaag gcgaaaatct tacaagatgt       720
     gaaggtcggc agtgattgca agtcaagcga tggtgcgttc tacagtcatc cgagactgga       780
     gcagaaatct ggagaaaaat ctgcgataaa gtgtttccgg tgcaagaagt cgggacacta       840
     cgcatcccaa tgccagaaga aacccagtga gagaaaggaa acccgaggag aaacccgtgg       900
     taagcaaagt ggtcacgctg cattctacgc ggcgtacaac gcagtgaagt catcagagga       960
     caatttcgac tggatcttcg attccggtgc aacaacgcat ctgtgccgga acaggaagct      1020
     attggaagaa gctgagaagg tgtcgtcaag tattaacgtt gcgaataatg ccaaagcttc      1080
     cgtcatctcg aagggcgtcg tcaatctgga agccgacatt ggaggttcgt catgtggcat      1140
     caccatgaag gatgtgctgt gtgttccaga tttagccttg aatctattat ccgtgggtaa      1200
     gatttgccag aacggatatc aggtgacgtt cgagaagcaa tcatgcaagg tcgttagccc      1260
     cacgaaggag accgtagcga ttggacagta ttcggatggc ctctacaagc tgaagttggt      1320
     caaggatccg acggttcacg tggcacggga gcagaacagt tttcaactgt ggcatcgtcg      1380
     attgggacat ctctccgtcg gcggtatgaa gcggctgaaa aatatagcga caggcataca      1440
     gtttgaagga gaggacatgg aaaaatgtgt ttcttgcatt caaggtaagc accagcggca      1500
     accgttcaag gtgaaaggtc atcgtgctga tcgggtgctc gagctggttc actccgatct      1560
     gtgtgggccg atggagacgg catcgttggg aggaagtaga tactttttga cattcatcga      1620
     tgatgcaagc aggaaggcgt tcgtgtattt tttgaaatca aagtcggacg ttttggaagc      1680
     attccaagat ttcaagtctt ttgtcgagaa ccatacggga gagcgaatca agcggatcag      1740
     aacggacaac ggcaaggagt acgttaatcg tgcgatgcga cggtgcttgc gtcaagctgg      1800
     aatccaccac gagacaacgg ttccgtacaa tccggagcag aatgggcttg cagaacggat      1860
     gaaccgaaca ttggtggagc gcgctaagag tatgctgttt gatgccgggc ttggaaagcg      1920
     attctgggcg gaagcggtag ctactgcttc gtacgtcgtc aaccgttcac cgaccaaagg      1980
     tctccaagtc acacctgaag agaagttcac gggaatgcgt cccgatttgt cgcacctacg      2040
     tgtttttgga agcgaggtca tggtgcatgt tcctaaggaa aagaggcgga aatgggacga      2100
     gaaatcagac cgttgcatct tcatgggcta cagtgagaac tcgaaagcgt acagagtgta      2160
     caacttcaag acgcaggacg tagcagttag tcgtgacgtg atattcctga aggaaggtca      2220
     agttacaccg agagaggaag atcccaccca agaggcacct ttcgaaatgg ttgtacagaa      2280
     tgagatggaa gttgcagagg aacaagtcgt tgaagttgaa gaagatctgc aggcgcaaga      2340
     tgacgagttc agtgaacccg agttcgagga atcagaagac gccgacaaga cgctgatcga      2400
     ctccgaacta caacctgctg cgctccctcc acaaccagat gacccacaac agttggtaag      2460
     gcgcagtgcg agggagcgcg taaccccagg caagtatcga gattttcatt tgggtctcag      2520
     tattcttcct gacgaaagtt cccaaattcc acagctttgc gatgtaccag gcgatgtgag      2580
     cgttgaccct cagacgttcc aggaagcgat ttcgtgcagg aacagcgacc gttggaaaga      2640
     ggcgatggtc gttgagtatc gggcacagat ggagaatcag acctgggagc tcgcccagtt      2700
     gcctgttgga aagaaggcac ttcgttgcaa gtgggtgtat acggttaaga ccaatccaga      2760
     tggatccacc gagcggtaca aagcccgttt ggtgaccaag ggctactctc aaatcaaggg      2820
     tgtcgactac gaagaaacct actcgcccgt ggtccggtat gctaccatcc gctacttgat      2880
     gtcgttagct gccaggttgg acctgaagat tcaccagatg gatgcagtaa ccgcgttcct      2940
     gcaaggtgaa ctaggggagg aagaaattta tatggagcag ccagaaggat tcgttaaccc      3000
     tgatcgtccg aggagtgtct gtaagctgaa gaaagcgata tacggactga agcaagctag      3060
     ccgaatttgg aaccagaagc ttgatagaga attaaagcgc tttggattka agcaatcgaa      3120
     gttcgacacg tgcgtctatt accggattga aaacggacag atcctgatag tagcggtata      3180
     tgtcgacgac cttctcgtat tttccaacaa ccagcgttgg gtgaaccatc tcaagaagca      3240
     gcttacatcg aagttcgtga tgaaggatct tggattggcc aacaaagtcc ttggaatccg      3300
     agtgacacga cagaaggaga ctgtgtgttt ggatcaagag cagtacattc agcagctact      3360
     cgaacggttc ggcatggggg aatgtgatcc aattgcgact ccggcggacc ataatcaaaa      3420
     attgacgaag cagatgagcc cgagcagcga ggaagaacga aagcagatgc agaaagttcc      3480
     gttccgtgag ctggtaggag gactacagtt tctggcgtgt tgcacgcgtc cggacataag      3540
     ttttgccgtg aatgcagtca gccagtttag cagtgatcca ggcaaaccgc actggacggc      3600
     agcgaagcgc attttgcggt acctgaaagg aacgaaggag atgaaaatta tttacaggaa      3660
     gcaaggagac gaaagtttga ctggcttcag tgatgcagac tggggaaacg acgtcgagac      3720
     gcggagatcc atcacgggat atgtcttcat gaagtcaggc ggaccgattt cgtggaattg      3780
     tcgaaggcaa tcgacagtgg ccttgtcgac aactgaagcg gaatatatgg cggtatcggc      3840
     agcagcccaa gaagctatct ggtggcgagg attacggcag gagctatccg gcgttgctga      3900
     gaaaattaca atctattgcg acaacaagag cgcaattcac ctagcggaaa gggaagtcgg      3960
     ttatgctcca cgcagtaagc acatcgacat tcgccatcat ttcgtgcggg agaagatcga      4020
     agagaacgtg attggtttgc agcatgttgg cagtcaacaa cagttggctg atctactgac      4080
     gaaggcggtt ccggctccca gattcgaaac cgaaagacaa acaattggaa ttggacggat      4140
     tctcggttaa gggggga                                                     4157
//
ID   Copia-155_AA-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-155_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-128
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1471-1471 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 128 BP; 47 A; 24 C; 17 G; 40 T; 0 other;
     tgttagcata gtaacccacg aattaaatag ataatcatag tgtgccattc aatattgtac        60
     agattaataa atcagtttag cctcaacata tcaaaccaag cagacgtgtt tcattcaatt       120
     gtccatta                                                                128
//
ID   Copia-156_AA-I repbase;    DNA;    INV; 4007 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-156_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4007
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4007
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1429-1429 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4007 BP; 1128 A; 786 C; 1152 G; 937 T; 4 other;
     ggttatgggc tccagcatgg aagacaaatc gaaagtgttc gcgttcgacg ggaataattt        60
     ccataactgg aaatttagaa tggagacggt gctagatatg cacgatcttc tggattgttt       120
     agtgcgcgac gcggaagagg tcccggagct gcaagtggaa gcggaggata cggccgctgt       180
     gaaaagtgac aaagagaaaa agttctccga gcgaaaaacg tgtgaaaaga agtgcaaatc       240
     gtttattgtt caagcgatcg acgataacca gttagagctg attaaggatt gccgaacgcc       300
     gaagcagatt tggagcacac tcaaaaacgt tttcgaacgt cgcggtgtgg ctggccaact       360
     gtatctccgc aagcagctcc tcacgttgcg gtacgtagag ggagtttgcc ggatgtcgga       420
     gcatctcttg cgattcgaca agttgatacg cgagctgaag ggaagcggag cgaccgtcga       480
     agaatcagac gctgtgtgtc atttgctttt gacacttccc ccatcgttcg attcggtcgt       540
     gacggcgatt gaaacgctac ccgatggcgt cacgatggac ttcgttaaga agaggctatt       600
     ggacgttgat ttgaagcggc gtaattcaga agcatgtgaa gaagcaagtg gtggtggtgt       660
     tgacggtgtg gcaatggcga gtaagcacaa caagaagaag ctgaagtgct atcagtgcgg       720
     gaagttcggg cacaaaaagg caaattgccg agaattcgat cgcgagagtg agaagcaaaa       780
     agtgaataat caaaacaaag cgccgaaacc gaaaagcgat gcatatcggc agaaagcaca       840
     cgttggtgca caagaagatc gaccggagat tgctttcatg gctgccggtg atgaagactt       900
     agtgcgtgtc ggttggtttt tagactcagg ggcaaccgat cacatgttgt gcgattcgcg       960
     gtatttttcg gtgatgcgac ggttggagcg tccgattgaa atcgttgtgg caaacggaca      1020
     gaaactgttg gcagagtatt gcggtgatgt gattatgtac acggttgttg atgacacagt      1080
     gagaaagtgc gaagcgaaaa acgttctcta cctgccgggg ttaagttgca acctattttc      1140
     ggtaaagcga attgcgaaag ctggtcttca agtgtgtttt gaagaaggaa aagccgaagt      1200
     gaagaagaat ggtgcagtgg ttgcctttgg cagattgaat ggcaaattgt atgagctcga      1260
     tatcttctgt aaacgaagtg aaatggggtc agccatgatt tctggaaaag tgtcacgcaa      1320
     tgcagtgctt tggcaccaga ggttcggcca cgtcggctgt gacagtttgc gwgaactggt      1380
     gaagtgcgag atggttgatg gactgaagct cacggacttt gactcggaaa cagttacatg      1440
     tgaaccgtgt ttgtctggga agatagtgaa gctaccgttt acttctggag aagaaaggcg      1500
     ctcgtcgcgg ccgctggaac taatacatag tgatgtatgt gggccgatga cgccgtgcac      1560
     ctggaacggt aagagattct ttgtatcctt tattgacgat ttttcgcatt tcgcgatcat      1620
     atatttgatg tccacgaagg acgaagtgat tgattgcttt cgagagtacg aggctcttgt      1680
     cacggctcat ttcggcagca gaattgcgcg gcttcgcaca gataacggtg gcgaatacgt      1740
     gagcgaagaa atgcgcaagt tttgccggaa caaagggatc tccatggagt tgacsgttcc      1800
     ctacacgccg gagcaaaacg gtgtatccga aaggatgaac cgtacgctga tggaacgggc      1860
     tagggcactg ttggcggaga gcggatttgg taaggagatg tggggtgaag ccgtwtacac      1920
     cgctacgtac ctgaccaatc ggtgcccaac ttcggcggtg acagagaaga aaactccgta      1980
     tgaactttgg actggtcgaa aaccggacgt gtcaaggttg aagattttcg gaagtgtcgc      2040
     gtatctgcat gttccgaaac agctcaggtc gaagttggac cccaagtgca agaaaatgta      2100
     ccacatcggg tacacagtga atgggtatcg actatgggat gacgatcgga agaagatagt      2160
     gatgggcaga gatgtggtgt tcgatgaatc caccatgttc ggtggaaagc ttgaagtgga      2220
     acctagcgtt cagaagaaaa aggaagtagt gcttggagaa aagatcgaac gaagtagtgg      2280
     agctccagat gagcgagaaa atgamttgtt aagtgaacat gaagaagcgt caggagcgga      2340
     acagtctgat gaggagcagc aaccgtcagt gcgtcgtagt ggtcgagaaa ggcgtgcgcc      2400
     agtatggcat gattgttacg aattgtgtga aactgcaatg tgtgctgaaa gcttcgttga      2460
     agatctgcca actacagtga acggtcttaa gcagcggtcg gattggccgc aatggcaagc      2520
     ggcaatttcc gatgaaaagg agtctctcat caagaacaaa acttggattc ttgctacgcc      2580
     acccccaggt aagaatatca ttgacagtaa atggatattc aaaattaagc gcaatgatgc      2640
     aagcggagcc gaacggttca aggcaagact tgttgccaga ggtttctctc aacgcaaagg      2700
     ttttgattac gagagtacct atgcgccagt ggccaagcac acgacgttgc gtgtattgct      2760
     ggccatcgct aaccagaaag gaatgcatct tcaccagctc gacgtgaaga ctgcatttct      2820
     caatggtgtg ctagagcaag aaatatacat gcgcctaccg gaggaattcg gtgctggaaa      2880
     cctggttgcc aagctgcaga agtcaattta cggcttgaaa caggcatccc gtgcctggaa      2940
     ttccagattt catgatttca taacaagcat tggcttcaag cgcagtagag tcgataactg      3000
     tttgtatacc acaactgttt ccggagagga agtatatttg atcatatatg tagacgacat      3060
     tgtgatcgct agtcgctctg tggatacgat tcgagattta aaggcaaaat tgaaggacga      3120
     gtttgatatg agtgacatga atgagatcag cacgtttttg ggcttaacga tagagaggcg      3180
     taaaaatgaa ggcgttctgc taatcagtca gcggaaatat ttggaaaatc tcctagctcg      3240
     tttcggcatg gctgactgca agccgaagca aacaccgctg gcatcgggcg tcaaacttga      3300
     gaagtgtaac gatccgtcca agtacactaa gcaaccctac agagaattaa tcggttgcct      3360
     tacttacgtt accgtgatgt ccaggccgga tttgtgcgcc gctgttaatt atttcagtgc      3420
     attccaaact tgtgctagcg acgatcattg gaatcacgcc aaacgtatcc tgcgatacat      3480
     taaaggaact ttggacctaa agctggtgta cagacgaaat gataagtgcg atacaatcga      3540
     tggatttgcc gattcggatt gggcgagcaa catttgtgac aggaaatcaa catcggggta      3600
     cgtgtttcgt gtttaccaag caaacgtatc ctggtcaacg cagaagcaga agactgtggc      3660
     gttatcgtct gccgaggcag agtacgtctc cttgggcgta gctgtgaaag aagcgctgtg      3720
     gctgcgaatg ctgctgaagg acttcaacgt cgatgtttct gagccagtca caattcgtga      3780
     agataatcaa gcgtgcatca gtattgctga agaagacaag cctacaaagc ggctgaagca      3840
     cgttgacgta cgattccatt tcgtacgtga agagatccag agaagaacca tccagttaga      3900
     gtacgtggca tcggaagacc aattggccga cataatgact aagggactac cgagaccaca      3960
     atatgaaaag ctgcgaagcc tactagggtt atcggcttga agggggg                    4007
//
ID   Copia-156_AA-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-156_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-210
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-210
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1472-1472 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 210 BP; 48 A; 53 C; 37 G; 72 T; 0 other;
     tattaacagt gtatgaccca accgattccc cttcattcta tttaccttga cataacagcc        60
     cttctggcaa ccctgtaact gttattgatg atgaataaat atcactacta gttgaacttc       120
     caaagcagaa aggtgtttct cttgttcgct gctgagaaag ccctcgggtg tgttttttcc       180
     tctgagtgtt cttcctcgtg ccgctcttca                                        210
//
ID   Copia-157_AA-I repbase;    DNA;    INV; 4000 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-157_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4000
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4000
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1430-1430 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4000 BP; 1075 A; 772 C; 1194 G; 958 T; 1 other;
     ggttatgtgc ccagtgtgat ggaggacaaa agcaagattg tcgcgttcga tggccaggga        60
     ttccataact ggaaattccg cctcgagacc gtgctggaca tgcacgattt gttggactgt       120
     ttggagcggg aagtggacga tatcgaagag tttcgcgatg tggccggtga gccggcggaa       180
     gcacgtgcgg aaaagacgaa gaaagttctg gagcgaagaa tgaaggagaa aaagtgtaaa       240
     tcgatcattg tgcaggcgat cgcggacagc cagctcgaac tagttaaaga gtgccaatcg       300
     ccaaagcaaa tttgggaaac gttgaaaaat gttttcgagc gtaaaggtgt tgccggccag       360
     ttgtatgtca ggaaacagct cctcacattg cgttatgtgg agggggctgg gaagacaatg       420
     gcggaacacc tagtgaattt tgataaattg attcgtgagc tcaaaggaag tggtgcaaac       480
     gtcgaggagt cggatgcggt gtgtcattta ttgttgacac tgcccccgtc gttcgacccg       540
     gtggtgacgg caatcgaaac acttccgggc ggagtcacga tggactttgt caagcgaagg       600
     cttttggatg tggacatgaa aaagcgaaat ctcgagtcga gtggtgaagc aagcggcagc       660
     catgatggtg ttgccatggc ttcgagcaaa tatgtgagga agatcaagtg ctttttgtgt       720
     ggaaagctcg gccacaaaaa ggccgattgc cgagtggtga agtcggtcgc taccagccct       780
     gcgcgtggta gtgcgaggcc gaaaaacgaa gcgaacaagc aaaaagctca tgttggtgtt       840
     agtgacgagc agccggagat cgcgtttctg acggctgaaa gtgaagattt ggtgaaagtg       900
     gggtggttta tcgattcggg tgccaccgac cacatgctaa aggatgcaga gtgtttttcg       960
     gttatgcgac gattagaaaa gccggtagaa atcgtggtgg cgaacgggca gaggcttcgt      1020
     gccgagtact gcggtgatgt gtcgttgtat gcgttcgtcg acggtgttcc gaaagagtgc      1080
     gtagcgagaa atgtgctttt cttaccgggg ctgagctgta atttgttctc agtgaagcgg      1140
     gtcgcgaaag ccggttggaa agtttgtttt gatggtgaga aagcagaaat cgtgaagaat      1200
     ggtgttgtct ccgcggttgg ctggctaaaa ggaaagttgt acgagttgga catttactgc      1260
     aaacgtagtg agatgggaag cgctatggtg tccggaagaa tttcgcgtag tgcgttattg      1320
     tggcatcaaa gatacggtca tgtgggttgc gatagtctcc gtgaacttgt gaaacacaat      1380
     atggtggacg gtcttgaact gaagaaacta gacgatgatg tgatggtttg tgaaccgtgt      1440
     ttatcgggta agatcgttca gttgccgttc acgcagagtg aggagaggcg atcatcgcgg      1500
     ccgctggaac taatccacag tgacgtttgc ggtccaatta agccagtgac gtgggacggt      1560
     aaaaggtttg tggtttcgtt tatagacgat tattcgcact tcacggttat atttctgctc      1620
     gagtcaaaag accaagtgtt cgaacgtttt cgggattacg aggctttagt tacggctcgg      1680
     ttcggtactc gaatcgccag gcttcgtaca gacaatggtg gtgaatatgc gaacgatcaa      1740
     atgcgcgagt tttgccggaa gaaaggtatt gccatggagt ttacggtgcc gtacacgccc      1800
     caacaaaatg gcgtatcgga gcggatgaac cgcacattga tggagcgtgc ccgtactttg      1860
     ctggcggaga gcggattcgg gaaggaaatg tggggtgagg cggtatgcac tgccacgtac      1920
     ctcacaaatc ggtgtccaac gtcggcggtg gatgagaaga aaactccctt cgagttgtgg      1980
     tacgggaaga aacccgacgt gaagaaattg agagtgttcg gtagtgccgc gtaccttcac      2040
     attccgaagg aattgagatc gaaattggac gcaaagtgca aaaagctatt ccatgttgga      2100
     tacacggtga atggctaccg tctttgggac actgaaaaac ggaagattgt gagtggaaga      2160
     gacgttgtgt ttgacgaaaa cttgttgttc ggaaagcaat ccgaagtgaa agtggatgtt      2220
     ccgaagacgg tagacctagt gattgaagaa ccgaaagtac aatcagggat tccggaagaa      2280
     gaagaaacag ttagtgatgt cagcagagaa gagtcagatg cggatgacga cgaagaagcg      2340
     gcggagcctc gggtctcagc caggcgaagt ggccgtgtac gccgtgagcc ggcgtggttc      2400
     gactgttacg aaatgacctg cggtttggcg atgtgcgctg aagactttgt cgagaatctg      2460
     ccgactacgg tggagggcct gaaacagcgc agcgattggc cgcagtggaa ggcagccatt      2520
     gctgaggaaa tggaatcgtt ggtaaggaat aaaacctgga gcctgacgtc gccgccaaaa      2580
     ggtaggaact tgattgattg taaatgggtt ttcaaaataa agaggaacca atctggaggg      2640
     attgaccgct acaaagcccg tttggtagct agagggttct cccaacggaa ggggctcgac      2700
     tacgaggaaa cttactctcc tgtcgctaag ctcactacat tgcgaactct cttggctatt      2760
     gtgaaccaca ccggaatgca tctgcaccaa cttgacgtga agacggcttt cctcaacggg      2820
     accatcgaag aggacattta tatgcgtttg ccgggtgaat ttgatgccgg ttcgctagtg      2880
     gccaagttgc aaaaatcttt gtatggcctt aaacaagcgt ctcgagcatg gaacgctcga      2940
     ttccatgatt acgtcaccgg cttgggattc aggcgcagtc aagcagataa ttgtttgtac      3000
     atcgcaaaca ttgagaaaga gaccgtcatt ctaattattt atgttgatga tatgctaatc      3060
     gcatgtcgtt cgttgaatgt cctcgtcagt atcaaacaga aattgggcga tgaatttgaa      3120
     atgacggatt taaaggaagt aagcacattt ttgggactga cgattgaacg aaacaggaag      3180
     gacggtgtgc taaaaatcgg acaagaactg tacctgaaaa gtcttttgaa ccgtttcgga      3240
     atgaccgact gcaagcctgt aaaaacacca ttggctaccg gattgaagct ggagaaatgt      3300
     kttgattcga cgaaattcac ccagcatcct tacagggaac ttgtagggtg tttgatgtac      3360
     gtgacagtta cttcgaggcc cgatttgtgt ttggcggtaa actactttag cggatttcag      3420
     agctgcgcta ccgatgaaca ctactcgcat ctcaaacgtg ttcttcggta tgtccaagga      3480
     actctcgaca tgaagctgat ataccacaga aagccggatg caaggcttct ggaaggattt      3540
     gtcgacgctg attgggcggg agatatcgtt gaccgcaaat ctctgtcagg atacgtcttc      3600
     aaaatacaag gagcttcggt gtcttggtgt acaaggaagc agacttccgt ggcgttatct      3660
     tcggcagaag ccgagtacgc tgccctcact atggcagtca ccgaagctat ctggatacga      3720
     ggtttgctac gtgatctggg acaacaagtt gctgatccaa ctgtaataca cgaagataac      3780
     caggcgtgca ttcgtgtagc ggaaagtgat aagccaacca ggagaatgaa acacgtagat      3840
     gtacgtttcc attttgtgaa gaacgagata gataatggaa ctgttcgtct actttacgtg      3900
     ccatcggaag accaaatagc agacgtcatg accaaggggt taccacgaat tcaatttgag      3960
     aagttaagag atttacttgg gttattggct tgacgggggg                            4000
//
ID   Copia-157_AA-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-157_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-237
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-237
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1473-1473 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 237 BP; 60 A; 57 C; 35 G; 85 T; 0 other;
     taataagagt gtgtattcac aaccaatcac ccttcgttgt atttgacatc acctttatat        60
     taaataacct tgaacataaa cgtcacaagc tctggcgcac ctttgtattc aaatacattt       120
     tcaataaagc tcattcgctg ttcatactct gaacgataca gttgttttta tctcttctcg       180
     cttgttctcg gtagtcctcg tttccgcgtg gtcaaactag tagcgccgct cttttta          237
//
ID   Copia-158_AA-I repbase;    DNA;    INV; 4197 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-158_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4197
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4197
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1431-1431 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4197 BP; 1176 A; 955 C; 1222 G; 844 T; 0 other;
     ggttatgggc cgcaagtgtg gcaccatagc aacgggcaaa caatcgaaga aaattttttc        60
     acccacgtca agaatcaaga agtgaaaact gaagaattcc gaagaatttg atgtcgctgc       120
     agagaactcc agtacgaagc atgaacggaa atccagaagg aagcaatcca ggagccggaa       180
     atccggtcgg agtagcggta ggaaatggaa tccagcagca tgcagatttg gccggaggag       240
     caccggcggc gacgaattca agaatccttc cggcgggagg aagcatttct ctgccattgg       300
     cggagcggtt acgaggccag gaaaactaca gttcctgggc ctttgcgatc aagatggtga       360
     tgatcagaga aggtacgtgg gcggccatca ggatggagaa cccgacggag gagctgtcgg       420
     agcgtgccct cgcaaccatt tgtttgagca tcgatccgac gaactacagc cttgtccaga       480
     atgcaacgac ggctaaggaa gcatgggaca gcttaaaggc agcattccaa gacagtggat       540
     acatccggga gtttggacta cttcggcagt taaccggagt aaagctagtt gattgtgcca       600
     cggtggaaga ctatgtgaac cagttgatgt ccaccaggca caaactagcg cagattggct       660
     tcgaggtgaa cgatcgatgg atgtcaagca tcttgctgat gggtctgccg aaacaatacg       720
     agcccatgat tatgggcctg gaagcatcag gaatccagat gcgagcggac acgatcagag       780
     cgaagatact ccaggacgtg aaatggcccg acgactctac aggaagcgat tcgggacggg       840
     cgttctatgg gcagccaaaa ggaaaatcga agccttccaa aacggataaa tcccatctga       900
     ggtgtttccg gtgcaaccaa cctggtcatt atgcctccga gtgccagcga gaagccaagt       960
     cagagccgaa ggggcaacgt agaggaagcc agcagacgtc gaagaagttc gataggcaca      1020
     cggcattcat ggtgcagcac ggtcgctgca atgcgaacga gtggatcttc gattctggta      1080
     cgtcatcaca catgtgccgg gaaaaggcga tcctgaaaga agcaaaagag gtgagtgata      1140
     gtgtcgtagt agcaaacagc atggagacgc ctgtagttgc caagggcaac gtaacgatca      1200
     aagcagacgt aggcggagca actgaaatac ttgacgtttc ggaggtactg tgcattcccg      1260
     acctggccat gaatttgctg tcagtgcaca agatttgcag ccgtggccat cgtgtggtat      1320
     tcaccaacga cgtgtgtaaa gtcatcgacc gcagcggcca tgtggtggct gttggagagc      1380
     aacaaggcgg actttatcgg cttcgccaga gtggaagaaa tgttacatgc atgaccgcgc      1440
     cgaaggaaga catcggatta tggcaccgtc gtatggggca cttgaatgcg cacagcttga      1500
     agcggctccg tggtatggtc catggtgtgc aatttggcga tggagaatta ccggcgtgca      1560
     ttccgtgctt ggaagggaaa catcaacgtc agcctttcaa gttcaaaggg gccagagcag      1620
     caaatgtgtt ggaagtcgtc cacagtgatt tgtgcggtcc catggaaacg acatccaaag      1680
     gtggaagcaa atactttctc acctttatcg atgatgccag taggaagtgc ttcatctact      1740
     tcattcaaga gaagacggaa gtgctagagt gtttcaagga tttcttggcg tatgtggaaa      1800
     cccaaactgg taagcgagtc aagcgtttga gaagtgacaa cgggacggag tacatcaaca      1860
     aagagatgaa gcgttacttg cggcaatgtg gaatccacca tgaaaccagc gtgccgtata      1920
     atcccgagca aaatggtctg gccgaacgca tgaaccggac catcgtggag cgtgcccggt      1980
     gtcttctgtt tgatgctgga ttggataaat cgttctgggc ggaagcggtt ggaacagcct      2040
     gctacctgat caaccggtca ccaacgaagg gcctgcaagt gacaccagaa gagcggtttt      2100
     tcggaacgaa gccggacctg tccaatctgc acgtgttcgg taccagagtg atgacgcaca      2160
     taccaaaagt gcggcggaag aaatgggacc cgaaatccga ggatggtgtt ttcgttgggt      2220
     atgctgcagg atccaaaggg taccgaatct acaatccgag gaccaaaaag gtgttcgtga      2280
     gccgtgatgt tgtcttcata aatgagaaca gcgacgaaga gcgatctgta gttcccgaac      2340
     cagatatgct gcaatttcgg atgacagcgg cagaagtcaa tctggaatcc gagccaggta      2400
     acgacgatga tgcgaacgaa tccggtgacg aggagttgcc agaaccagcc ggtgacacgg      2460
     agttgccaga accaacagaa tctgcgctcc ctccacaaca agaggatcca caatgtgtgg      2520
     tcaggcgcag tggcagggag cgccatatcc caggcaagta caacgatttt caattgagct      2580
     tcagtgccgt ccctcaaatc aattccccgt ctcaggtatc tcacggcggc gaaccgcaaa      2640
     cgtacgcaga ggcattgcga tcagacgaca gcattcgttg gcgagaagcg atggaggcgg      2700
     agatgaaatc cctaaacgac aaccggacgt gggagctcag caatctaccg gcggggcgaa      2760
     aggctctgaa atcgaaatgg gtctacaagc tgaagactaa ggcagacgga tccatcgagc      2820
     ggtacaaagc acggctcgtt attaagggat actcccagat taaaggagtc gattacggcg      2880
     agacgtactc gcctgtcgtt cgatatgcaa cggtccgtta tctgatggcg gtggcagcga      2940
     ggctaggact gaagatacac caactcgatg cggtgacggc ttttcttcaa ggtgacttag      3000
     cggatgaaga aatctacatg gagcagccag aaggtttcgt cgcccccggc ggcaaggtgt      3060
     gccgtctgaa gaaagcactg tacgggctga agcaagcaag ccgcgtatgg aacactaaac      3120
     tcgacacggt gctgcgcaac attggcctgc aaaggtcgaa gatggacacg tgcgtctact      3180
     acttcatcca aggcgacaag attctcatcg tggccgtgta cgtggacgat ttattggtgt      3240
     tcgccaacga tgacgacatg gtgacagagt tgaaggagca gctgatggca caattccaga      3300
     tgaaggatct ggggtatgcg gagcaggtcc taggaatgcg cgttacgcaa gccgatggaa      3360
     ggattacctt ggaccaggag aagtacatcg agcagctgtt agaacggttt ggaatggtca      3420
     actgcaatcc cgtttcaaca ccgttcgatt catgccagaa gttgacgaag gacatgtgcc      3480
     cgaaatcgtc cgatgaagcc gaaaggatgt caaaggtacc gttccgggag cttgttggtg      3540
     ggctacaatt ccttgcacaa tgcacacgac cagacgtatc attcgcggtc aacgcagtca      3600
     gcagcttcaa tagcaacccg ggggaagccc attggacggc agccaaacgc atactcaggt      3660
     atctgaaagg aacaaaagat atgaaactcg tatatgatag cgacaacgta gaacagttcc      3720
     acgggtactc ggatgcggat tggggaaacg attcggaaac caggcgatcc gtaacaggat      3780
     acgtgtttct gcatgcgggt ggagcagttg catggagttg cagaaggcaa ccaacagtgg      3840
     ctctatccac aacagaagcg gagtatatgg ctatcgcagc ggctggacag gaagctctct      3900
     ggtggcgctc attccgagca gagctaagcg gagtcaacac gtctgtccaa atgaattgcg      3960
     ataataggag cgcaatctgt ttagctgaaa aagaagtagg atactcggcg cggaccaaac      4020
     acattgattt gcgtcatcat tttatcaagg agcagttgga gcagaaaact attgtccttc      4080
     aacatgtttc ttccgatcaa caattggcag atgccctgac aaaatcagtt ccatttccga      4140
     aacttcagga agcaaggcgt ttacttgggg tttattgaat tcagggttaa gagggga         4197
//
ID   Copia-158_AA-LTR repbase;    DNA;    INV; 88 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.08, Created)
DT   14-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-158_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-88
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-88
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1474-1474 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 88 BP; 24 A; 17 C; 12 G; 35 T; 0 other;
     tgttaatcat agtaaccctt gaattatgtt agctgtaata aatcattcta gtttgtcata        60
     ccgttgcaac cacacgtgtt ttccttta                                           88
//
ID   Copia-159_AA-I repbase;    DNA;    INV; 4168 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-159_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4168
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4168
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1432-1432 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4168 BP; 1114 A; 861 C; 1294 G; 899 T; 0 other;
     ggttattggc ccagagcgaa gtccggaagg tgaaaatagt gagaaaagtg atcccgcgga        60
     ccggtttgtt tttttttttc cccgtcgtga gtgtgcctct tgtgtgtgaa gatggctgat       120
     ttgggcaaac tttcgtttgc gcggctgaac aacaccaact ggcaaagttg gaaattccgt       180
     atggaaatgt tgttgatgcg ggaagaacta tggtatgtga ttaccgaagt taagccggag       240
     ccggtgactg cacagtggac gaaagacgaa caaaaagccc gtgcaactat cggcttgtgt       300
     gtggaagata gccagtttag cctggtaaaa agtgccacaa ccgcgaaaga attttgggac       360
     aaattgcgcg cgtaccacga aaagtcgacg atgacttccc gagtgtcttt gctgaagaaa       420
     ctgtgtgcgt tgaacttgtg cgagggtggt gatatggaga aacacctcct agaaattgaa       480
     gaactgtacg atcggttgtc gacgaccggt atagacttgg aagagccact tcggattgcc       540
     atgattctcc gaagtttgcc ggactcctat ggcgggctag tgacagcctt ggagggtcgg       600
     ccggatgccg acttaaccat gcaattggtg aagtcgaagt tgctcgacga attcgagcga       660
     agaaaggaga agaatggtgg ttcgcgaagt gatgcaagcg cgatgaagag ttcaacgaag       720
     aacgggaagc aaagtggtac ggtacagatc cggaagtgtt tccactgtgg aaagccgggt       780
     cactttcagc gagattgccg aatacttgcg cggcagaaga aaggtgacga agaacggaag       840
     aggcccgaag agaagcaaag tgctaagcag gcgaagaata ctggcagtgg tgtgtgcttc       900
     atggccggaa gtgttccacg cgggtcgtgg ttcatagaca gtggggcaag ttgtcacatg       960
     acgtgtgatg agagcttttt ctcgactttg aaaaagaaga atggcccaaa tgtgttcctg      1020
     gccgatggaa aaatggctaa aacggccgga tacggtgaag gtacagtgct cggtgtgaac      1080
     agcgacggtg atgcagttga tgtgaagctt gtcgacgttc tatacgttcc atcgttgaca      1140
     agtggactga tttcggtgga caaattgaca gcgaatggtt tcacggccgt tttcaaggac      1200
     gatggatgtg agatccgtaa cgctaccggc tcattgacgg tagtaggaga gcgttctggc      1260
     tgcctatacc ggctgaagct agcagaatcg tcgaagaaag ttgaaggtaa gacacacacc      1320
     cttaattgtc agcatcagtg gcaccgacgt ttcgggcata ggcaccccga tgttattagg      1380
     cgaattcgcg aggagaagtt gggcatcggc atgaatgtga gcgactgtgg catccgtgaa      1440
     tgctgcgaac cgtgtctgga ggggaagttg gcgaggaatc cgattcccaa gacagctgag      1500
     aagaagtcaa cgcaagtgct ggatctgatt cacactgatt tgtgtgggcc gatgcgaaca      1560
     acgacgccag gcgggaagcg gttcttgatg acgatgattg atgacttcag ccgcttcacc      1620
     gtcgtttacc tgctagaaaa gaagtcagaa gcgccggaga aagtgaagga gtacgttcgg      1680
     tatgcggaaa atcttttcaa ccgaaagccg cgtattgtcc gctcggatgg cggaggcgag      1740
     tacgcgaata aggagttgcg cgacttcttt gccaaggagg gcatcaaagc gcaattcaca      1800
     acagcgtata caccacaaca aaacggtgta gccgaacgga aaaatcgatc gctgcaggag      1860
     atggcgacga cgatgctcct cgatgctggc ctacccaagc gatattgggg cgaggccgtg      1920
     gttacggctg cttatttaca gaaccgactt ccgtcgcgat ccgtggagaa aactccatat      1980
     gagagatggt acgggcggca acctgtactg agtcacttga aagtatacgg ttgtcccgcc      2040
     tacgtacata tacccgacgt caagcgaggt aagtttgaca gaaaggcgag gaagttacgg      2100
     ttcatcgggt actctgatgt ccacaagggg taccgattcg ttgatacgtc gacggataag      2160
     gtcaccatca gccgtgacgc aagatttttg gagctaaagg atggatcgtt tcgtgagacg      2220
     gaattggagt caacatccgt cgagaattca ccggatagtg agtttgagtg gcctcttccg      2280
     gtagtgttat cgaagcagcc ggcagctgta gaagaagcta tgggagaagt tgccgaagac      2340
     ggcgaagaaa acgaagaaac agtgagtgaa acaagcgagc aagaagacta ccacagcatg      2400
     aacgatcccg atccagaaga cgatcccctc gcaatgaagg aggaggatga agacgaagaa      2460
     gaaaatagtg aagtggacga agcacatagc gaagaagcgg gaagtgaggc tcgacaaggt      2520
     cgtcgcaccc gaggcgtgct accaagccgg ttgtcggatt atgtggtagg cgtcgtggag      2580
     caggaagctg aagaaccagt gactttcaag caggcagtgt ccagtccgga ccgagtgttg      2640
     tggaaggcag cgatggatag tgaaatccag tcgcacaagc agaacgggac gtgggagttg      2700
     gtacctttac cgaaaggtaa gagagttgta ggcagccgtt gggtctacaa agtaaagcgg      2760
     aacgagtcca acgaagtagt ccgctacaag gcgcggattg ttgcccaggg gttcacgcaa      2820
     tgttacggca tcgattacga tgaggtgttc gctcctgtga ctaaacacac caccctacga      2880
     gttctgctgt cactggctgc gaaaaaggga atgatgttga agcactttga cgtgcgcacc      2940
     gcttatctct acggagacat agatgaggag atttacatgc gccaaccacc cggatacgaa      3000
     gtttgcggca aggaggaggt cgtttgccga cttcgtagaa gtatttacgg gttgaagcag      3060
     tcagcccgtt gttggaaccg gaagttaacc ggtgttctga caaatcttgg attccaaaca      3120
     agttctgcgg atccgtgtct attcgtggca accagaaacg gcaagagagt gtacctgatc      3180
     gtgtacgtgg atgatttcct cgtcggatct gtgagcgaag aggagttgtt tcgcgttcgg      3240
     aaacagctgg gtcagcattt cgatatagtt gatctaggtg acgttaaaca cttcctaggt      3300
     ctggaagttc agaaggagag cgacgggtac agtgttagcc tggctaacta catcgacaaa      3360
     ctggttgcca aagtaggtct ttgtgatgca aagacggcaa gaacgcccat ggatcagggc      3420
     tatctgaagc gagaggttga ggagaaaccg ttcgaagatg gcacgaagta caggagtgtg      3480
     gttggtgcgc ttctctatgt ggcggtgtgt gcgcggccag atatctcgac gagtgttggg      3540
     atactaggaa ggaagttcag cgccccaaca gaggtagact ggacagctgc gaagcgtgtg      3600
     gtgcggtacc tgaagggtac cagagattgg aaactgctgc ttggacggaa gaagaaggaa      3660
     gagctagtgg cattttctga ttcggattgg gctggagatc agaatacgcg taggtcaaca      3720
     accggctacg tagtgttcta tggaggagga gcagtttgct gggtcagtcg tcggcaaaat      3780
     tgtgttacgc tatcgacgat ggaggccgag tacgtcgccc tggcagaagc gtgccaggaa      3840
     gttgtgtggc tgcgacgact gcttaaagat ttcggtgagg aacagttaga agctacactg      3900
     gtatacgagg acaaccaagg atgcctgagc ttcgcccgtt ccgaaagatc cagcaaacgc      3960
     tcgaagcata tcgagaccaa gcaccatttt gtccgagacc tgtgcgacaa aggcgaggtg      4020
     gtgcttcagt actgcccaac ggaccagatg ccagctgacg tcctgacgaa gccattgggt      4080
     ttcgttaaac atcaacagtt tgccgagcag ttgggtttgg ttgatggacg accgagtcga      4140
     ggtaaggtgt ccagccattg aggaggag                                         4168
//
ID   Copia-159_AA-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-159_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-290
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-290
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1475-1475 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 290 BP; 68 A; 62 C; 55 G; 105 T; 0 other;
     tgatgggata tggcaatgtc tcacccctta ctacatcttt gagtttttga cattcttacc        60
     ccttttatat ttggcccttc tggcaacact gtaagtgttt atgtttttaa agaagacgac       120
     aacaacaaag tttattttta gcactagtga attcgatacc gccattgtat gtaaatatag       180
     ttcgtccttg ctcgtaaaag tatcgcggcg tttgttccgt tttatttaat ccttccgaga       240
     ccagtacgtg tgtgtccgct tgtgctctgt gagaactctg cttgccaaca                  290
//
ID   Copia-15_AA-I repbase;    DNA;    INV; 4123 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_AA_;
KW   Copia-15_AA-LTR; Copia-15_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4123
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 941-941 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [1536-2024] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1650..4121
FT                 /product="Copia-15_AA-I_1p"
FT                 /translation="MQSKSQVLECFKLYEGMVSAKFERKISRIRCDNGGEY
FT                 RNEHFERFCRKKGIQMECTVPYTPEQNGVSERMNRTLVEKARAMLFGSNVD
FT                 KRFWCEAVETAAYLVNRSPASALQDGKTPSELWEGRKPDVSGLRVWGSPSY
FT                 CHVPKEHRKKLDSKAWKGIFLGYHCNGYRIWDPRWKKVVVLRDVIFDEAGT
FT                 VDEPNEQGNLPDLVRIRRPPIDTELDGSEVEDVGDHQDDMDGTFDEFEDCE
FT                 GATGGSDSAGASGRDTAETSGNHFNSENESRVADSNGHSVRKRAPPKWHDD
FT                 YDMSCAYALSAMNFVESFPDTLDEMKKREDWPQWKTAVDEEMKSHQKNGTW
FT                 TLCKLPEGKRAVSCKWVFRIKRGEDGGVDRYKARLVARGFSQRFGYDYTDT
FT                 YAPVARLDTVRTVLAVANQERLEVHQMDVKTAFLNGRLREEIYMTLPESVE
FT                 GRPDGVCRLNRALYGLKQASRAWNERFHELATKLGFRRSENDRCLYVRQEG
FT                 ESKLFLLLYVDDILIIGRNLMDIVKVKKHLAAEFEMSDLGQVGNFLGMRIE
FT                 RDIQNRVLRITQRTYLESLLRRFGMEECKPVATPMECRLKLKKGVETERTT
FT                 QPYRELIGCLAYVAQSSRPDLCAAVNLLSQYQSCPTNEHWGYVKRILRYVK
FT                 GTLDIGLEFRGGERVEALVAYSDADWGNDENDRRSISGSVLRVFGGTVMWL
FT                 TRKQQTVALSSTEAEFVALCTAACEGIWLRRLLSDLGVTVEGAVTYYEDNQ
FT                 SCIKVAEEPKDSRRLKHVDIKYNFIRELVQDGRIAISYIPTEKQLADIMTK
FT                 GLPAGAFGRLREDLGLQRLSRG"
XX
SQ   Sequence 4123 BP; 1148 A; 772 C; 1249 G; 954 T; 0 other;
     agaggttatt ggcccagagt tcgcgtgtgt cgggaagtat taatgagtgt attcgtagtc        60
     cgtgtgtgat atttctaaga aaatggaacg ggaatcggaa cttgtgcgaa ttccgatgtt       120
     tgatggcaca aattttccat cgtggaagtt ccgcatggtg atcgtgttag aggagcacga       180
     tttgaaagaa tgtgtggaac aggaggtgga agaagtggag gcgctggcta tcaaagaaga       240
     agacagcgct gccatcaaga agcagaagga agaagaggcg gtgaagcgga ggaagaaaga       300
     ccgccggtgc agacgttcat tatttctcgc atttgtgaca gccagttaga gtatgtgcag       360
     gatcagccaa caccaaagtc tatgtgggtg gctttgcaca aagtgttcga acgaaaaagt       420
     atcgcgagtc ggttgcactt aaagaaaaag ttgctcaccc tgcgtcacga aagtggaacg       480
     agtttgcagg agcacttttt gattttcgat cgtatcgttc gcgaatataa atcgacgggt       540
     gcgatgatcg acgacatcga tgtagtgtgt catctcttgc taacgctggg accaaagttc       600
     gcgacggtag ttacagcgtt agagacgatg ccggaggaca atttgacatt ggaatttgtc       660
     aaatgccggc tactcgatga agagattaag tgtcggggaa aagatattgg tgcaagtgtc       720
     tccaaacgtg agccagctgc tttcgtgggg aagccgaccg gaacgaagaa caagtggaag       780
     tgtttcgtgt gccaaaaggt tggtcacaaa gcggcagagt gtccggagcg cgagaagaag       840
     aaaagcgaca agaagaaaac aagtgcgaac gtaacggaag aaagcagtgg tggatttgtt       900
     tgctgctgaa agtgactgcg gaagaagatc aagtgctagc agattccggt gcgtcagaac       960
     acatgacgaa tgacaagagt gtattcgaaa cgttagtgca tggaagaacc gatcaagatc      1020
     gcagttgcgt tgagtggaaa atccgctgtc gcgaagttcc gtggttcggt taaagtgatc      1080
     gctgcgattg gaaacgagaa ccgcgagtgc acgttggaaa atgtactgta tgccccagac      1140
     ctacggtgca atctattttc gatccgtaag gtggaaatgg cgggcatgac ggtagttttc      1200
     aaggacggtg gcgtgaaagt tttcaaagac ggaaaagtgg ttgcttgtgg tcagcgtcgc      1260
     ggagtgcagt atgaaatgga cttccgttcg aagaaagaag gtgtttcgtc gctgtactcg      1320
     tgtgggaaga ttcagaagtg caatgaacta tggcaccgac gtttcggaca cttaagtgag      1380
     aagaaccttg agaacatcat gaagaaaaag atggtgaaag gttttgagaa gaatacgagt      1440
     gatgataaca gtgaagtgta ctgcgagtct tgcattgagg ccaagcaaac tcggaagccg      1500
     ttttccgaaa gctcggagaa gagatcatct cgggttttgg aactgattca caccgatgtg      1560
     tgtgggccgg taacgccggt ggctcacgat ggcagtcgat attacgtaag ttcatcgatg      1620
     attggagcag attcaccata gtttaccgga tgcaatccaa gagccaggtg ctggaatgct      1680
     tcaagctgta tgagggaatg gtttcagcaa aattcgagcg aaagatctcg cgcataagat      1740
     gcgacaacgg cggtgagtac cgaaatgaac attttgagcg tttttgtcgt aagaaaggga      1800
     ttcagatgga gtgtaccgtg ccgtatacgc cggaacagaa tggcgttagc gaaaggatga      1860
     accggacgct ggtggaaaag gcacgggcga tgcttttcgg ttccaacgtc gacaagagat      1920
     tctggtgcga ggccgtagaa acggccgctt acttggtaaa ccgtagtcca gcgagcgccc      1980
     ttcaggatgg gaagactcct tctgagctgt gggaaggtcg caaacctgat gtgtccggat      2040
     tgcgcgtctg gggtagtcct tcgtactgcc atgtaccgaa ggaacatcgt aaaaagttgg      2100
     acagcaaggc ttggaaaggt atttttctcg gataccattg caatggctac cgtatctggg      2160
     atccaaggtg gaaaaaggtg gtagtactac gcgatgtgat cttcgacgaa gctggtactg      2220
     tagacgagcc aaacgaacaa gggaatctac cagacctggt gaggatcaga cgaccgccga      2280
     tcgatactga gttggacggc agcgaggttg aagatgtggg agatcatcag gatgatatgg      2340
     atggaacgtt cgatgagttt gaggactgtg aaggagcaac aggcggctca gattcagcag      2400
     gggcatctgg tcgagataca gcagagacat caggaaatca tttcaattcg gagaatgaat      2460
     caagagttgc tgattcgaat ggtcacagtg ttaggaagcg tgcaccaccg aaatggcatg      2520
     atgattacga tatgagttgt gcttacgctc taagcgcaat gaattttgtt gaaagcttcc      2580
     cggatacttt ggacgaaatg aagaagcgtg aagattggcc gcagtggaag actgcagtcg      2640
     acgaggagat gaagtctcat cagaaaaatg gcacgtggac gttatgcaag ctgccggaag      2700
     gaaagagagc cgtatcctgt aagtgggttt ttcgtatcaa gcgaggtgag gacggcggtg      2760
     ttgaccgcta caaggctaga ttagtggcac gtggtttctc ccaaagattc ggatacgact      2820
     atacagacac gtatgctccg gtagccagat tggatacagt tcgaacagtt cttgccgttg      2880
     cgaatcagga acgtctcgaa gtccatcaga tggacgttaa aacggcattt ttaaatggga      2940
     gacttcgtga agaaatctac atgacgctac cagagagtgt agaaggacga ccggacggtg      3000
     tttgccgact gaatcgcgcg ttgtatggcc tgaagcaggc atccagggcc tggaatgaga      3060
     gattccatga gttggcaact aaacttggat ttcgtcgtag cgagaacgat cgttgtctgt      3120
     acgtgagaca agaaggcgaa tcgaagttgt ttctgttgtt atacgtcgac gatattctta      3180
     ttattggtcg gaatctgatg gacatcgtta aggttaagaa gcatctagca gcagagttcg      3240
     agatgtctga cctagggcag gtcggaaact ttctcggtat gcgcatcgag agagacatac      3300
     agaaccgtgt tttacggatt acccagcgta cctacctgga gagccttctt cgcagattcg      3360
     gaatggaaga atgtaagccg gtggcgacac cgatggaatg ccgactgaaa ttgaagaagg      3420
     gtgtggagac ggaaaggaca actcaaccgt acagggagtt gattggctgc ctagcgtatg      3480
     ttgcacaaag ttcccgaccg gatttgtgtg cagcggtgaa cctgttaagc caatatcaaa      3540
     gttgtccaac caacgaacat tggggctacg tgaagcgtat cctgcgctat gtgaagggaa      3600
     cacttgacat cggattagag tttcgaggag gcgaacgtgt ggaagctctc gtggcatact      3660
     ccgacgcgga ttggggtaat gatgagaacg accggcgatc tatttccggc agtgtattgc      3720
     gagtgttcgg cggcacagtg atgtggttaa cacggaagca acaaactgtt gcattgtcgt      3780
     ccacagaggc tgagtttgta gcattgtgta cggcagcatg cgaaggcata tggttgcgtc      3840
     gattgttatc tgacctgggc gtaactgtag aaggagctgt aacctactat gaggacaatc      3900
     agtcctgcat caaagtggct gaagaaccga aggacagtcg acggctgaag cacgttgata      3960
     ttaaatataa tttcattcgc gagttggtgc aagatggacg gattgcgatt tcctacattc      4020
     cgacggagaa gcagctggca gacataatga caaaagggct gcctgccgga gcttttggac      4080
     gtttacgtga agatctaggg ttgcagagat tgagcagggg tat                        4123
//
ID   Copia-15_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_AA_;
KW   Copia-15_AA-I; Copia-15_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 942-942 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 226 BP; 62 A; 50 C; 47 G; 67 T; 0 other;
     tgaggagcaa tatctgcact gatcccactg tgcaacgtga cgctcaacgc ttacccccat        60
     catcagtgtt gcgcccatga ggtgtgaagt gaaagaaaga gaacgatgac agttcgaaat       120
     ggaatcttta ttaccgttgt agtttttgct aaataaacac gttttagttt gctttataaa       180
     ccgtggtgcg attatcatta ttttcccggc cgaattccaa ttccca                      226
//
ID   Copia-15_CQ-I repbase;    DNA;    INV; 4183 BP.
XX
AC   AAWU01015815;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_CQ_;
KW   Copia-15_CQ-LTR; Copia-15_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 345-345 (2011).
XX
DR   GenBank; AAWU01015815; Positions   53755   57937.
XX
CC   Positions [1403-1939] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..4174
FT                 /product="Copia-15_CQ-I_1p"
FT                 /translation="MSDRNYGIERLVGRENWADWKFAVQTHLEVEDLWDAV
FT                 EPKVKADGTVEAVDPAKSKLARGKIIQFLEPVNYYHVREAKTAQEAWKNLV
FT                 NAFEESGLTREVGLLHKLIRTDLDSCGTMEIYANQIISACHQLKSIGFPIP
FT                 DRFVGALLLAGLPDRFKPMVMALKNSGMAITGDSVKTILLQEEDELLPGEK
FT                 TFVAKRRVNKPGGYRRNTQTAGGFHGDDKTASGSRSNHGSRKSQPEERGPR
FT                 CRKCNKIGHIAKHCPEKDAVRGKQALCTVLSTFKSAGTDDWYLDSGATQHM
FT                 TRNLELLEDVRDRSGTVVAANKESMEIQACGTATLFPSCFNGEEPVPVSDV
FT                 HFVPDLSTNLLSIAQIVRKGNTVLFNADGCIIRNADGGVVATGVIEDDLFK
FT                 VDQRKNKALACSRVETLETWHKRLGHLNVSSIKKLANGVASGVQINGDGMD
FT                 DCQICPMGKQARLPFSKSGSRAEELLEVIHSDIAGPMELPSLGGCRYYVSF
FT                 IDDKSRRAFVYFLKTKSEDEVLACFKEFHVLAERQTGRKLKTLRTDNGKEY
FT                 VNKGFREYLKRMGIRHQTTNDYTPEQNGMAERFNRTAVERGRCMLFEAKLP
FT                 KPFWAEAVNAAVYLMNRSPTSGHSLTPEEMWSGKKPDLSHVRVFGTKAMVQ
FT                 VPKVKRKKWDSKSRECVLIGFEEDTKGYRLYDLASKTFLKSREVTFINEGL
FT                 GEKAAVTKKKPEVISLDFGTTPKVHAAQQPGLVPPEPDAVEEEQPLDVDDV
FT                 LEDDGHEEPVVDAAVPGPRTDAVVDDQVASSSSAMTNVLPPQNISKPPGSG
FT                 VLGRSGREHILPGKYKDFIVSGKGLPVSTISQALEDDSSDSSEYDDADDVE
FT                 FGGLATGHRDDPLAEPRTYAEAMASPDAERWKQAMVDELESIKANETWTLV
FT                 DLPPDRKAVGSKWVYKIKRDADGRVLRFKARLVAQGFSQQYGTDYDEVFAP
FT                 VVRQTTFRALMAVAAKKRMTVKQYDIKTAFLYGDLEEEIYMRQPRGFEGAK
FT                 GKVCKLKKSLYGLKQAARSWNQKLHDALKRQGFERCVADTCLYRKRRAGRW
FT                 CYVLVYVDDLIVASEDPKMIEALAGALQQNFEMSVLGDIRFYLGMEIEKNA
FT                 QGDYFLSQRKYIGEVVESSGLADAKVSTVPLDPGYVKRESKEEPLPDNKEY
FT                 QKLVGKLLYIAVNTRPDISAAVSILSRKTSRPTQDDWNELKRVVRYLKGTK
FT                 DYRLRLSQNGTDNGIVGFCDADWAENREDRKSNSGFVFKVNGGTVSWACRK
FT                 QSCVSLSTAEAEFVSLSEAVQEALWLKVLLRELNDEQQVVIQEDNQSCLKM
FT                 LSAEKFSNRTKHIATRFHFTKDQIEKGEVSCVYCPTEDMVADLLTKPLARI
FT                 RTEKLAGMIGLTAAV"
XX
SQ   Sequence 4183 BP; 1012 A; 1041 C; 1360 G; 770 T; 0 other;
     agaggttatg agcccggacg tgcgcgaaga ctagcggaag atgtccgatc ggaattacgg        60
     gatcgaacgg ctggtcggcc gggagaactg ggccgattgg aagtttgcgg tccaaaccca       120
     cctcgaagtt gaagacctgt gggatgccgt cgaaccgaag gtgaaggcgg atggaacggt       180
     ggaagcggtc gacccggcca agagcaagct tgcgcgaggg aagatcatcc agttcctgga       240
     accggtaaac tactaccacg ttcgcgaagc gaagacggcg caagaagctt ggaagaatct       300
     ggtcaacgcg ttcgaggaga gcggactcac gcgggaggtc ggattgctgc acaagctcat       360
     caggaccgat ctggacagct gcggaacgat ggaaatctac gcgaaccaga tcatctcggc       420
     gtgccaccag ctgaaaagca tcggattccc gattccagac aggttcgtag gagcgttgct       480
     gttggcgggg ctgccggacc ggttcaagcc catggtaatg gcgctcaaga actccggaat       540
     ggcgatcacg ggggactccg tgaagacgat tctgctgcag gaagaggacg agctgttgcc       600
     aggtgaaaaa actttcgttg ctaagcggcg agtcaacaag ccaggtggtt accgacgcaa       660
     cacccaaaca gcgggcggtt tccatggcga cgacaaaaca gcgagcggct ctcgtagcaa       720
     ccacggttcg cgaaaaagtc agccggagga acgcggccca cggtgcagga agtgcaacaa       780
     aattggccac attgcgaagc actgccccga gaaggatgcc gtgcgtggga agcaagcgtt       840
     gtgcacggtg ctgtcaacat tcaagtcggc cgggacggac gactggtacc tggactcagg       900
     tgcgacacag cacatgacgc ggaacctgga gctgctggag gacgtgcggg accggagcgg       960
     aacggttgta gctgccaaca aggagtcgat ggagatccag gcatgcggaa cggccacgct      1020
     cttcccgtcg tgtttcaatg gtgaggaacc tgttccggta agcgatgtgc actttgtccc      1080
     cgatctttcg acaaatttgc tgtcgatcgc acaaatcgta cgcaagggca acacggtgct      1140
     gttcaacgcg gacggctgca ttatccggaa cgctgatggc ggcgttgttg cgaccggtgt      1200
     tatcgaggat gacctgttca aggtggacca gcgtaagaac aaggcgctgg cgtgctcgcg      1260
     cgtggagact ctcgagactt ggcacaagcg cctgggtcac ctgaacgtga gcagcatcaa      1320
     gaaactggcc aacggtgtag ccagcggtgt gcagatcaac ggagacggca tggacgattg      1380
     tcagatttgc ccgatgggga aacaagctcg attgccgttc agcaagagtg gttcccgcgc      1440
     cgaggagttg cttgaggtaa ttcattccga tatcgctggt ccgatggaat tgccgtccct      1500
     cggcggttgt cgatactacg tttcgtttat cgacgacaag tcccggcgag catttgtgta      1560
     cttcctcaag actaagtcgg aggacgaagt actggcttgc ttcaaagaat tccatgttct      1620
     ggcggagcgc cagacaggcc ggaagttgaa gacgttgcgt acggacaacg gcaaagagta      1680
     cgtcaacaag ggattccggg agtacttgaa gcggatgggc atccgacacc agaccaccaa      1740
     cgactacact ccagagcaga acgggatggc cgaacgcttc aaccggacag cggtcgagag      1800
     agggcgctgc atgttgttcg aggccaagct cccgaaacca ttctgggctg aggcggtgaa      1860
     tgctgcagtt tacctcatga accgatcgcc aaccagtggt cacagtctca caccggagga      1920
     gatgtggagc ggaaagaaac cggatctctc tcacgttcgc gtgttcggaa cgaaggcgat      1980
     ggtgcaagtg ccgaaagtca agcgcaagaa gtgggattcg aagtcgcgtg agtgtgtgct      2040
     gattggtttt gaagaggaca cgaaggggta ccgcctgtac gacctcgcga gcaagacttt      2100
     cctgaagagt cgcgaagtga ctttcatcaa cgaaggcttg ggcgagaaag cggctgtcac      2160
     gaagaagaaa ccggaggtaa tttcccttga cttcggtaca actccgaagg ttcatgccgc      2220
     gcagcagcct ggactggttc cgccggaacc ggatgccgtt gaggaggagc agcctctcga      2280
     tgttgatgat gtcctcgaag acgacggcca cgaagagcct gtggtggatg ctgcggtccc      2340
     tgggcctagg accgatgctg tggtcgatga ccaagtagct agcagtagtt cggccatgac      2400
     caacgtgctc cctccgcaaa acatttccaa accacccggg tctggggtgt tggggcgcag      2460
     cggtcgggag cacatccttc caggcaagta caaagacttt atcgtttctg gcaaaggtct      2520
     acctgtgtcc accatttctc aggcactcga ggacgattcg agcgactcca gcgaatacga      2580
     tgatgccgac gatgttgagt ttggagggct agcaactggc caccgagacg atccacttgc      2640
     ggagccgcgg acctacgcgg aggcgatggc gtcgccggac gcggagcgct ggaagcaagc      2700
     gatggtcgac gagcttgagt cgatcaaggc caacgagacg tggactctcg tcgacctgcc      2760
     cccggatcgg aaggctgttg gctcgaaatg ggtctacaaa atcaagcggg acgcggatgg      2820
     tcgcgtgttg cggttcaagg cacggttggt tgcacaagga ttcagccaac aatacgggac      2880
     cgactacgac gaggtgttcg cgccggtggt gcgacaaacg acctttcgcg cgctgatggc      2940
     tgttgctgcg aagaaacgca tgaccgtgaa gcagtacgac atcaagaccg ccttcctgta      3000
     cggcgatctt gaggaggaga tttacatgcg tcagccacgc ggattcgaag gcgccaaagg      3060
     caaggtgtgc aagctgaaga agagcctgta cggactgaag caggcggcgc ggtcctggaa      3120
     tcagaagctt cacgatgcct tgaagcggca aggattcgag cgatgtgtgg cggacacgtg      3180
     cctgtaccgc aagcgacgag ctggacgttg gtgctatgtt cttgtgtacg tggacgactt      3240
     gattgttgcg agcgaagatc cgaagatgat cgaggccttg gccggagcgc tgcagcaaaa      3300
     cttcgagatg agcgttctgg gagacatccg gttctacctc ggtatggaga tcgagaagaa      3360
     cgcacaaggt gattacttcc tgagccaacg gaagtacatc ggagaggtcg tcgagtcgag      3420
     tggacttgcg gacgcgaagg tgtccactgt tcccctggat ccggggtacg tcaagcgcga      3480
     gtcgaaggag gagcctcttc cggacaacaa ggagtaccag aagttggttg ggaagctgct      3540
     gtatattgcc gtcaacacga ggccggacat ctcggcggcg gtgtccatct tgagccgcaa      3600
     gaccagcagg ccaacgcaag acgactggaa cgagctgaag cgggtcgtga ggtatctgaa      3660
     aggaacaaag gattaccgat tgcgactgag ccagaacgga accgacaacg ggatcgttgg      3720
     attttgcgac gccgactggg cggagaaccg agaggacagg aaatctaaca gcgggttcgt      3780
     gttcaaggtc aacggcggaa ctgtaagctg ggcatgcagg aagcagagct gtgtctcgct      3840
     ttcaaccgcc gaggccgagt ttgtatcgct ttccgaagcg gtgcaggagg cgctgtggct      3900
     gaaggtgctt ctgcgagagt tgaacgacga gcagcaagtc gttatccagg aagacaacca      3960
     aagctgcctg aagatgttgt ctgccgagaa gttcagcaac aggacgaagc acattgccac      4020
     gcgattccac ttcacgaagg accagatcga gaagggggag gtaagctgcg tttactgtcc      4080
     aacggaggac atggtggcgg accttctcac gaagccacta gccaggatca ggacggagaa      4140
     gctggctggg atgataggct tgaccgcagc agtctaggag gag                        4183
//
ID   Copia-15_CQ-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   AAWU01015815;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_CQ_;
KW   Copia-15_CQ-I; Copia-15_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-130
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 346-346 (2011).
XX
DR   GenBank; AAWU01015815; Positions   53625   53754.
XX
SQ   Sequence 130 BP; 33 A; 27 C; 27 G; 43 T; 0 other;
     tgttgagttg aagactgcgc gcaatcaagt aggcactgtg tgccggcagc ttggttacaa        60
     ttattagttg aataaactta ctaccgattg gacgtatttc taatccactg cgtttctcat       120
     tactcttaca                                                              130
//
ID   Copia-15_DTa-I repbase;    DNA;    INV; 3746 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   06-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3746
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, paired flanking LTRs are ~98%
CC   identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(143..667,671..2401,2359..2931)
FT                 /product="Copia-15_DTa-I_1p"
FT                 /translation="MSALYQIDKLEEKNYDSWSIQMRSVLVHAELWDVASV
FT                 EMEVESAAEDSNWASKNSKALAMITLSVKTSQLSYIKSCTTAFEAWTKLKE
FT                 AHQPSGPVRKVSLYKQLLSLKMEDGQNVSSHLNSFSEVLDQLSSVGIEMSD
FT                 ELRAIILLIFPKSTKILWSPLRRAISYQNSRCCESKKRKEKDGLILKKTTR
FT                 THRRLLLRSHSTRKRVSFATNAENKGTSKPNVGMMDLKRRSHPQQVFKSSA
FT                 ACWEPWTQIALVVRSGVWITATSHMCCDDKMFTSMTEHSELIGLAGDGFLK
FT                 AEGKGVVKLKTDRYTIVLSDVLYVPMMKANFMSVSQTVSKGNLVHFNEKHA
FT                 KIIQSGECILQINRTGNLYIFEGMSGQCLAASSIDGLLWHMRYGHLNFRSL
FT                 TDCFKKDMVRGIEGCNIPPNASCRTCMLSKIHVQPFPQKAESRASEVLELV
FT                 HTDVCGPFSTRSLGGNRYFLSFIDDKSRRIFVYFLKGKDEVFSKFVEFKEL
FT                 VERQTGKLLKCIRSDNGKEFVNTTFDKFLKANGINHQRSKFQQKGKEYRMV
FT                 GYSRTAKGYRLYDPNTGHVIEKRDVLFDERAFDPTAGSISFDLPQGNGTPE
FT                 LLVEDEIDSKDLISNGEVKLCSSGYDRSDGESKDAEQHGRSNDKFISAEDE
FT                 DSAKDGDLEDDRAEVEDIGARHVGRVGPGRPKLIRTGKPRRRRKQYNVLGA
FT                 AVNGEIFLPVSYQEAISCSDSELWLEAMQKEYKALMTNQTWHALLDVNGFL
FT                 QSNLARAIGCKWVFTVKRDANGQVQRYKARLVAKGCSQQYGINYFETFSPV
FT                 CRMESIRFILALAAQLKLYLHQMDVCTAYLNSDLTDTVYMKQPCGFLVKDH
FT                 ANGVLLLMKAIYGLKQSGRGWNYKLDEVHRGIGFSSCKNEPCLYMNTDGPH
FT                 LSLILVYVDDLIMACQDKEDLINIKSKISQSFDCAPQGK"
XX
SQ   Sequence 3746 BP; 1191 A; 701 C; 922 G; 932 T; 0 other;
     ggtaatgggc ccagagcacg aatatatact caagtattgc tcaatagaaa gatttccagg        60
     aattgtgaaa tacaagtaat tttttgcatt acgagtgcaa aaagggagtg gcgtgagaac       120
     aaaagtgaaa cacagcttca gcatgagtgc gctttatcaa attgataaat tggaagaaaa       180
     gaattatgat tcttggagta ttcaaatgcg cagcgtactg gtccacgcgg agctttggga       240
     tgtggcctca gtcgaaatgg aagtggagag tgccgctgaa gactcaaatt gggcgagcaa       300
     gaacagtaaa gctttggcaa tgatcaccct cagtgttaaa acatcccagc tgagttacat       360
     caaatcctgt acgacggcat ttgaggcatg gacgaagcta aaggaggcgc accagccgag       420
     tggtcccgtt agaaaagtat cactctacaa acagttactg agcctaaaaa tggaggatgg       480
     ccaaaatgtt tccagccacc tgaactcttt cagcgaagtt ctagatcagc tttcgtcggt       540
     gggcatcgag atgagtgatg agctacgagc aataatcctg ttaatcttcc caaagagtac       600
     gaaaattttg tggtcgccat tgagacgcgc gatttcttac cagaattcga ggtgctgcga       660
     atcaaagtga aagaggaagg agaaagacgg tctcattctc aagaaaacga cacgcacgca       720
     caggcgtttg ttgctacgaa gtcattcaac aagaaaaaga gtgtcatttg ctacaaatgc       780
     ggaaaacaag ggcacatcaa agccgaatgt cggaatgatg gatctcaaaa gaagaagcca       840
     cccccaacag gtgttcaaaa gcagtgcagc ttgttgggag ccctggactc agatagcctt       900
     ggtcgttcga agtggtgttt ggataacggc tacgagtcat atgtgctgcg acgataagat       960
     gtttacgagc atgacggagc attctgagtt gattggattg gctggagacg gattcctaaa      1020
     agcggaggga aaaggagtgg tcaagcttaa aacagatcgg tacaccattg tcctaagcga      1080
     cgttctgtat gtgccaatga tgaaggcaaa ttttatgtct gtaagtcaaa ctgtatcgaa      1140
     aggcaatctg gtgcatttta acgaaaagca tgccaaaatt attcagagcg gagagtgtat      1200
     actacaaatc aacaggactg gaaatctgta tatattcgag ggaatgtccg gccaatgcct      1260
     tgctgcatcc agtatcgatg gattgctatg gcacatgcga tatggtcatt tgaattttcg      1320
     tagcttaacc gattgtttca aaaaggatat ggttcgtgga atcgaaggct gtaatatccc      1380
     accaaatgca tcatgtagga catgtatgct aagcaaaata catgttcaac cattcccaca      1440
     gaaagctgag agtagagcca gtgaagtgct ggaactagtt cacacagatg tatgcggccc      1500
     ttttagtaca cgatctctgg gcggaaatcg ttactttctt tcgtttatag acgacaagtc      1560
     ccggcgtatc tttgtttact ttctaaaagg caaagacgaa gttttctcga agtttgtgga      1620
     atttaaggag cttgtggaaa ggcaaacagg aaagctttta aagtgcatac gtagcgacaa      1680
     tggaaaggaa tttgttaaca cgacctttga taaattcctt aaagcaaatg gaatcaatca      1740
     ccaacgcagc aaattccaac aaaagggaaa ggaataccga atggttggct attctcgaac      1800
     agccaaagga tataggctct atgatccgaa cacaggacac gtcatcgaga agagggatgt      1860
     actgttcgac gagcgagcat ttgacccgac tgctggttca atttcttttg acctaccaca      1920
     aggcaacggt actccagagc tccttgtaga ggatgaaatc gacagcaagg atttaatctc      1980
     taatggcgag gtcaagctct gttcaagcgg gtacgaccga tcggacgggg agagcaagga      2040
     tgcagaacaa catggtcgca gcaatgataa gttcatcagc gcagaggatg aggacagcgc      2100
     aaaggacggt gacttagagg acgaccgcgc ggaagttgaa gacattggag ccagacacgt      2160
     aggacgagtg ggtcctggaa gaccaaaact tattcgaacg ggcaagccta gacgccggcg      2220
     aaaacagtac aatgtcctgg gagcagcagt taatggcgaa atatttcttc cggtaagcta      2280
     ccaagaagca attagttgtt ccgattccga gctgtggcta gaagcgatgc aaaaagaata      2340
     caaggccttg atgactaatc aaacttggca cgcgctattg gatgtaaatg ggtttttaca      2400
     gtgaagaggg atgccaatgg gcaagtgcaa cggtacaaag cacgtttagt agctaagggt      2460
     tgctcacagc agtatggaat taattatttc gagacttttt cacctgtctg taggatggaa      2520
     agcatccgtt tcatactggc cttggctgca caattaaaac tatatttgca tcaaatggat      2580
     gtatgcactg cctatttgaa tagcgattta actgacactg tttatatgaa acaaccatgc      2640
     ggatttctgg tcaaagatca cgcaaacgga gtgcttttgc taatgaaggc gatttatggt      2700
     ttgaagcaat cgggaagagg gtggaactac aagttggatg aagttcatcg tggtattggt      2760
     tttagttcat gtaaaaacga gccttgtcta tatatgaaca cagatggacc ccatttatcc      2820
     cttattctgg tatacgtgga cgatctgatc atggcctgcc aagacaagga agatctgata      2880
     aacattaaaa gcaaaatctc tcaatcgttt gactgtgccc cccaaggaaa gtaacacatg      2940
     ttccttggta tggaaattaa acgagaaggc gaattaggag atattacttt gagtcaaagc      3000
     caaaatattt aaaatttgat ttatcggcac ggcatttgat gcaggtttta aagtttcatg      3060
     cgacaaggat ggatgcaaaa agatgaacga gcaggatacc aaaaggccat aggtgaaatc      3120
     atgtggctgg atctgtgcac aagaccaaat atattacatt caatatctaa attggctcaa      3180
     cgtaatatgg atccccacat tgagcattgg acaggagtga agcatgttct tcgatatttg      3240
     gcatcaacaa atgatttaaa gttgcattac aggaatttta aggagccatt atctggatat      3300
     gtggactcag actggggcgg tgataaaact gataggaaat cacatacagg atatgtcttc      3360
     tacctagctg gaggaccgat atcttggaag tggcactcag cagtacggag gcggagtaca      3420
     tggctttgtc gtctgcatgc aaggaggcga tttcattgag acggcttatc ttggagatcg      3480
     gctgcgggga ctccaaaaca tcaaaaacat gcataccgac aatttaagtg ctcagaaatt      3540
     ggccaaaaat actgttacca ttcaagatct aagcatatca ggtaccactt tgcacgagat      3600
     attgttagag aaggataaat tattcttcag tatcttccaa ctagtcagat gattacagac      3660
     atattaacta aaaatctgca aaaacaaaag catggcgagc tctatattaa atgtataata      3720
     gttgttcata cattgaggaa gggtat                                           3746
//
ID   Copia-15_DTa-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   06-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-15_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-169
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5640-5640 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 169 BP; 50 A; 34 C; 23 G; 62 T; 0 other;
     tgtattgaaa cagcactgta atctcttagt attatgcttt atatcgatat atcacgatat        60
     tgtatcacgt accatctttg acgttatcga ataaagttcc atcacttacg catatttact       120
     caaccaagtc gcacgtgttt ttctctgtca agcggaataa tctttaata                   169
//
ID   Copia-15_LH-I repbase;    DNA;    INV; 3997 BP.
XX
AC   ADOQ01007954;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_LH_;
KW   Copia-15_LH-LTR; Copia-15_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3997
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01007954; Positions    7226    3230.
XX
CC   Positions [1490-1984] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           881..3976
FT                 /product="Copia-15_LH-I_1p"
FT                 /translation="MAAEQSLKDVDDWIGDSGAYKHITRNSNWFVELKSLN
FT                 PPEEVRVDDGRILKATAVGKINVSVHDGEKWVPRCLKDVRLVPDFEPLNLF
FT                 SIAATTDMGYKAHFSKSTVVVENSEGDVIVRVVKKGHSTYRMLIKVEKPAE
FT                 ACAVQKEVSASWETWHRRLGHAGKDKVKELLKSKGYCATGSEDFFCEACVF
FT                 GKMTKGPYKTTVNKDFKPGTKIHCDLSGKVSINSASGYRYFAVFVDESSGY
FT                 KKVAMLKKKELVEEFTKVIKEVKEETGRPIEILRTDQGTEFTGTSFQDLLK
FT                 KHKIKHETSVEYTPQSNGMAERAIRSITEKARSLLASANLPKFMWAECVST
FT                 ACYLSNLVATRDLKKTSYELWHGKEPSIEHLRAFGCDAFVHIPRQKRNKFD
FT                 KKARKGQLIGYGPSTKLYRIYFQDFQDVRIVRDVKFNEEKQNIFCMEDETE
FT                 LTSSVDVDRDKINGDEEIDSTENIEEVAKTPTHPKQTNVHKPSGPLTMTLR
FT                 NRRPVVEEAPAEMLREGHEVLMALISEEPKTAKEALEGEDSVKWQQAMKDE
FT                 LDSLVKNDVIETCVLPSKKKVIGTGWVLKIKRHPNGEINKLKARIVCRGYS
FT                 QRHGIDFSETFAPVVRMDSIRILLAIAAQEKLVLKQCDVKSAFLYGEIEEE
FT                 IYVRPPDEVDIEEGKVWMLKRSLYGLKQSPRNWNKKFNELITTFGLTRSIA
FT                 DPCIYYGNGQRGRLLLAVYVDDILVAGHQEAVVTEPLDFMKAAFEIKIEEP
FT                 TYFLGLELNVDRKSGCIRVNQEGYIRSMLARFGMENCNRALTPGVVQVKEQ
FT                 QENVDETSEVQFPYRTAIGCLLYASTHTRPDISFQVNHAARAIETPTPHDV
FT                 REVKRIFRYLKGTLSVGIQFGGGKNEVVGYCDSDYAGCPDTAKSTFGHVFV
FT                 LNGGPISWESRKSTIVADSTTVAELQAAYEASKQAMWIRDLMRELITSLEG
FT                 PTTLYCDNESAIKLSKSEEIKKRTKHINVRFNFLRQAVGDNIVEVKHVAGT
FT                 ENPADMLTKPLSRPKLLNCCKILNIK"
XX
SQ   Sequence 3997 BP; 1249 A; 728 C; 1024 G; 996 T; 0 other;
     ataaagaaat ccctataggt tatgggccca ggcgtgtgaa ctgtgagata tctaaggaaa        60
     gataaaaggg gtacagtgtg caaagaaaga cagaggtcca agtataacgt cgcttgaaac       120
     tgcaaggatg gaaataaatt tgaagtctgt cacgcaactg aactcgagca gttacgttcg       180
     ttggcatttc gagattcagg ctcatctgga agcaaaagat gtatttgatg tggccgatgg       240
     atcgaaggtg cagccagtgg ataatacgct ggccgactgg gaaaagaaag atgccttggc       300
     gagatcatta atcagtaagt ctctcgacga tgcacatttt aatggtagtc gcttgtaagt       360
     catctgcgga tatgtggaag actctcgtgg gtcattacga tgaggtgtcg aacaccacga       420
     ggcaaactgc gttggaagcg tataacgatt atcattggaa agaggacatg actgtaacgt       480
     catatatctc ggggcttatg ctcatcgaaa ataagctcaa ggcgcaaaaa ttaaacatcg       540
     aaaaggaaat gattattacg aagatcgttc gaggtctacc gcagaaattc gaaaatttca       600
     aacaagtatg gcggatttgt ccaatggcga atattacggt ggaacaactg caagcaaaat       660
     tattagatgt cgaacgtgac gctggggtga cgccatctgg aaatcatggt gtggtactat       720
     atggtcagaa aagtcgcgat aataaaagta agaagaaaat cagtttaaag aaggaccgca       780
     gtgtcataat tgcaaaggtt ttggacattt tgctcgtgac tgtccatctg agaagagaga       840
     caagagctca ggaggaagtt cgtctgacaa tcgtgtagcg atggcggcag aacaaagcct       900
     gaaagacgtt gacgactgga tcggtgattc aggtgcgtat aaacatatta ctcgaaatag       960
     taattggttt gtcgagttaa agtcattgaa tcccccggaa gaagtaagag tggacgatgg      1020
     taggattctg aaagcgacag ctgtcggcaa aataaatgta agcgtccacg acggagaaaa      1080
     atgggtacca cgatgtctaa aggatgtgag gttagttcct gattttgaac cgctaaatct      1140
     cttctctatt gcagccacga cagacatggg atataaagcg catttcagta agtcaacggt      1200
     tgtggttgag aactcagaag gcgatgtgat tgtgcgtgtt gtcaagaaag gacattcgac      1260
     gtatagaatg ttaattaaag tcgagaaacc agctgaagct tgtgcggttc agaaggaggt      1320
     ctctgcgtct tgggaaacat ggcatcgtcg actgggacac gcaggaaaag acaaagtaaa      1380
     agaactgttg aaatccaaag gatattgcgc aactggaagt gaagatttct tctgcgaagc      1440
     ttgtgttttt ggaaagatga ccaaaggacc atacaagaca actgttaata aggatttcaa      1500
     gccaggtaca aaaattcact gtgatcttag tggaaaggtc tcgattaatt ctgcaagcgg      1560
     ttatagatat tttgctgttt tcgttgacga gagctccggc tacaagaaag tagctatgtt      1620
     aaagaaaaag gaactcgtcg aagaattcac aaaggtgatc aaggaagtca aagaagaaac      1680
     gggacgtcca attgaaattt tgcgaactga tcaaggaacg gaattcacag ggacatcatt      1740
     tcaagacctt ctaaagaagc acaaaatcaa gcatgaaacc agtgtcgaat atacaccgca      1800
     gtcaaatggt atggctgagc gtgccattcg atctataact gaaaaggctc gttctctgct      1860
     tgcaagtgca aatctaccaa agtttatgtg ggctgagtgt gtatctactg cttgttatct      1920
     gtcgaatctt gttgccactc gtgatttaaa gaagacatct tacgaacttt ggcatgggaa      1980
     ggagccatcc atcgagcatt tacgtgcatt cggttgtgac gcttttgtgc acattccaag      2040
     acagaagaga aataagtttg ataagaaagc tcgaaaaggg caactgatag gctatggacc      2100
     gagcacgaaa ctgtatcgta tttatttcca agattttcaa gatgttcgca tcgtacgcga      2160
     cgtaaaattt aatgaagaga agcagaatat tttttgcatg gaggacgaga cggagttgac      2220
     atcctctgtt gatgttgatc gagacaagat aaatggagac gaagaaattg attctactga      2280
     gaacatcgag gaagttgcta agacacctac gcatccgaaa caaacaaatg tacataaacc      2340
     aagcggacca ttaacaatga cgctccgcaa tcgtcgtcct gttgttgagg aggctccggc      2400
     tgaaatgttg cgggaaggtc acgaagtttt aatggcgttg atctcggaag aacctaagac      2460
     agcaaaagag gctctcgaag gtgaagactc cgtaaaatgg cagcaagcta tgaaggatga      2520
     acttgattca ttggtgaaga atgacgttat cgagacatgt gtcttgccat caaagaagaa      2580
     agttattggc actggttggg tcttgaagat caagcgtcat ccaaatggtg aaataaataa      2640
     gctgaaggcc agaattgttt gccgcggata cagtcaaaga catggaattg atttctctga      2700
     aactttcgca ccggtggttc gtatggactc gatcagaatt ctgttagcca ttgctgctca      2760
     agaaaagtta gtactcaaac aatgcgacgt gaaatcagca tttctctacg gggaaatcga      2820
     ggaggaaatt tatgtacgac ctccagatga agtcgacatc gaggaaggga aggtttggat      2880
     gctgaagagg tcactttacg gtctgaagca gtcgcctcgc aattggaaca agaagttcaa      2940
     cgagcttatc acaaccttcg ggttaactcg ctctattgca gacccgtgca tttactatgg      3000
     caatggtcag agggggcgtt tactgctggc tgtatatgta gatgacattc tcgttgctgg      3060
     acatcaagaa gctgtggtga ctgaaccgct ggattttatg aaggccgcat ttgagatcaa      3120
     gatcgaagaa ccgacctatt tcttgggtct cgaactgaac gtcgatcgga aatcaggatg      3180
     tattcgagtt aatcaagagg gttacatccg aagcatgctt gctcgttttg gcatggaaaa      3240
     ttgtaaccga gctctcacac caggagtagt tcaagtcaag gagcaacaag aaaatgttga      3300
     tgagacgtcg gaagttcaat ttccatatcg tacggctatt ggatgtttgc tgtatgcttc      3360
     gacgcatacg cgaccagaca tctcgtttca agttaatcat gctgcacgcg cgatcgagac      3420
     tccaacgccg catgacgtaa gagaagttaa gcgaatcttc cgttacctaa agggaacatt      3480
     gtcagttgga attcagtttg gtggaggtaa aaatgaggtt gttggatatt gcgattccga      3540
     ttatgctgga tgtcctgaca ctgccaaaag tacattcggg catgtgtttg tattgaacgg      3600
     tggaccaata tcctgggaat cgcggaaaag taccattgtc gcagattcta cgactgttgc      3660
     tgaactacaa gctgcatacg aagcatcgaa acaggcaatg tggattaggg atcttatgag      3720
     ggagttgata acatctcttg aaggtccgac tacgctctat tgcgataatg aatctgccat      3780
     caagttgtca aagtccgagg agatcaagaa gagaacgaag catattaatg ttcgtttcaa      3840
     ttttctgcgc caggctgttg gagataacat agtggaggtt aagcatgttg ctggcacaga      3900
     gaacccagca gacatgctaa cgaaaccgct atcccgccca aaactgctca actgttgcaa      3960
     aattcttaac ataaagtgag actacggcaa gaggggg                               3997
//
ID   Copia-15_LH-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   ADOQ01007954;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_LH_;
KW   Copia-15_LH-I; Copia-15_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-179
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01007954; Positions    3229    3051.
XX
SQ   Sequence 179 BP; 42 A; 36 C; 28 G; 73 T; 0 other;
     tgttgattat gtgacgtttg tctcacttat tcctattgct atatattaaa cgttgtttct        60
     atgtaagaca gatggcgtgc gcactcttcg ttatcatact ttgtctatgt ctatatattc       120
     ttattattct aagttagtct acaatacgcc ttgtaacaac tcacacgtgt cgctctgca        179
//
ID   Copia-15_SI-I repbase;    DNA;    INV; 4089 BP.
XX
AC   AEAQ01019900;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_SI_;
KW   Copia-15_SI-LTR; Copia-15_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4089
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01019900; Positions    4519     431.
XX
CC   Positions [1504-2028] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1183..2901
FT                 /product="Copia-15_SI-I_1p"
FT                 /translation="MGYTVTFHNDECCIVRACDGVQVALGEPCGNLYKLKT
FT                 PNVIYAISNPDPEPMKNCVHKWHSILGHRDIQLVKTLPSSDLVNGIHFDEC
FT                 SKECNNILNCEVCLKGKMSRMKFPSSNNRAKEKLDLIHSDVCGPMQTATPS
FT                 GKRYVLTFIDDYSKFTAVYLIKEKLEVFGRFREFVEMCKKMFNRKPKLIRT
FT                 DRGGEYMSVEFIKFLDQEGIQYQRTAPYSPQQNGAAERKNRTLLEMARCMI
FT                 LEAKLENKFWGEAVVMANYIQNRLPARDIVRTPFENWYGTKPNLNSFKRFG
FT                 SKCYVHVPNEKRRKLDSKATEAIFVGYDAISKAYRCYVPSSAKVVISRDAK
FT                 FVYKDSDWKINQDQFKEENEVTITHLPEDEFYSADEDETIEENDPATSDAF
FT                 RDLQQSPIAQRDINEHVPVNNENEIRIPELRRSTRSNLGVPPCRYTEKRIN
FT                 VIKEEKVEPKTYNQAISSEQKNDWIQAMKNEIKSLKENETWELVDLPKDRR
FT                 AIGCKWVYKIKSYGENEIFKARLVAQGFSQKYGIEYDEVFAPVVKHATYRI
FT                 LFTVAARKQMKVIHLDAKSVSKRKIK"
FT   CDS           2870..4075
FT                 /product="Copia-15_SI-I_2p"
FT                 /translation="MLRAFLNGKLSETIYMKQPPGFTEEGREHQVCLLRRS
FT                 IYGLRQSARVWNQEIHQTLTAAGYIQSKNDPCLYIKYNKGKICYVLIYVDD
FT                 LIVASEDDNMLEECEKILSAKFKIKNLGDVRNYLGLQIKRDTNGNFALNHK
FT                 RYIMKIIKDFGMMEAKTSNVPISVSYGKGGNSELLIDNENYRKLVGCLLYI
FT                 AVNTRPDISASVTILAQKVTKPTQEDWNELKRILRYLKGTADLSLMLGGIN
FT                 CNTGLVGYADANWAEDVALQQRKSTTGYVFKYFDGVISWCSKRQTCVAKSS
FT                 MEAEYIALSEASSEALWIRRLLRDFKQPEEDPTTIYEDNQSCLKLIKEEKL
FT                 SNRSKHIDVHAYFVKDHVDKGTIKCVYCPTENMVADLLTKPLSANRIVKLR
FT                 ETCSLMEI"
XX
SQ   Sequence 4089 BP; 1451 A; 703 C; 913 G; 1022 T; 0 other;
     tgctattagg ttatgggccc agtccctcga aagtagtgct ttgaagactg aaagagttca        60
     agtgaattga cttaacctat aaaacgacag actgcataaa aacgatgacg tcggaatcga       120
     agtatattat aacgaagttg aataatggaa attattttaa ctggcgatac aagatgaaga       180
     tgttattaat cgagaagggc gtttggacag taattacagc agatgcgcca aatccggtta       240
     cacaagactg gacgcaaaag gatgaaaagg cacacactgc aattgcattg aacattgagg       300
     acgaccagat tcaacacatc agaagttgcg atacagcgaa aagtgcatgg aagaacttgc       360
     aagattttca cgaaaagaac acgccgaaca acaaagtgag catcctgcga cagctcatga       420
     caacacgatt agacgaaggc ggtaatgtag aatctcacgt aactaaaatg acggaattat       480
     ttcaacgctt catagcttat ggagatgatt taaagcaagg aattaatttt gtgtgttaca       540
     attctcagtt cactacctga aagctatgat gtattagtta caactttaga gaatcgcaaa       600
     gatgaattaa catcaagtgt tgtttgctcg gctgtgattg cggaatatag aaaacgtctc       660
     gaacgaagcc gtgataataa tactgaggct gtattaagga tcagttcgtc aaccaaagga       720
     tcatcaaatg caaaaggtga agcatttgac gtgagcaagt cgaaatgtct tttctgcaag       780
     cgcaaaggcc actggaaaaa ggattgccgt aagttacttg cgcataaaga gaaaaagagt       840
     caagaacaac aaagtaagat tcagcaacag gtaaattcgg cagaagctag cggcagtgct       900
     caacatttat tcgcagcaat gacgtttaat agtgacggct ggttggttga tagtggagca       960
     actaatcaca tagtgagtag acgtgaaatt tttaccgaca tgaaaaagca ttccgaaagc      1020
     atctacgtag caaatggtta taaagtaact gcagtcggta aaggaacagt cgatgcaaaa      1080
     tttatgaata aatctggtga cattgttgag gttacgatta aaaatgtatt gtatgtacca      1140
     gatatataag gaaattttat ttctgtacga cgtttaaaca aaatgggcta tacggtgact      1200
     ttccacaatg atgaatgctg tatcgttcgt gcatgcgacg gagtacaagt tgcattagga      1260
     gaaccttgtg gaaatctata caagctgaaa acaccaaatg taatatatgc aataagtaat      1320
     ccggatccgg aaccaatgaa gaactgcgtt cacaaatggc atagtattct tggccataga      1380
     gacatccagc tagtgaagac attgccatca agcgatcttg tcaacggtat tcattttgac      1440
     gaatgcagca aggaatgtaa caatatatta aactgcgagg tatgtcttaa aggtaagatg      1500
     agcaggatga aatttcccag ttcgaataat cgagcaaaag aaaagttaga cttgattcat      1560
     tctgatgtct gtgggcccat gcagacagcg acaccatctg gtaaaaggta cgttctcacc      1620
     tttattgatg actattctaa atttactgct gtctacctta ttaaagaaaa attggaagtt      1680
     tttggtagat ttagagaatt cgtggagatg tgcaagaaga tgtttaatcg taaaccaaaa      1740
     ttaattcgca cagatagagg aggagagtac atgagtgtcg aattcatcaa gtttttggat      1800
     caagaaggca ttcaatatca aagaacggca ccgtatagtc cacagcagaa tggcgcggcc      1860
     gagcgtaaaa acaggactct cctcgagatg gcaagatgca tgatcttgga agctaagctg      1920
     gaaaataaat tttggggcga agcagtcgta atggcaaatt acatacaaaa tcgtttgcca      1980
     gccagggaca ttgtacgaac accgtttgaa aattggtatg gtactaaacc taatctaaat      2040
     tctttcaaac gatttggatc gaaatgttac gtacacgtac ctaatgaaaa gaggaggaaa      2100
     cttgattcga aagcaaccga ggcaattttt gttggctatg atgcgatctc aaaagcatat      2160
     aggtgctacg ttccatcaag tgcaaaagta gtcataagtc gagatgccaa attcgtctac      2220
     aaggacagcg attggaagat taatcaagat cagtttaagg aggagaatga agtcacaatt      2280
     acgcatctac ctgaagatga attctacagt gccgatgaag acgaaacaat agaagaaaac      2340
     gatccagcaa cgagtgatgc atttagagat cttcagcaat caccgatagc tcaacgagat      2400
     attaatgaac acgtccctgt taacaatgaa aatgaaatca gaataccaga acttcgtcgg      2460
     tctacaagat cgaatttagg ggtaccacca tgtcgttaca ctgaaaaaag aatcaacgtc      2520
     atcaaggaag aaaaagtcga gccaaaaaca tacaatcaag caatcagttc cgaacaaaag      2580
     aatgattgga ttcaagcaat gaagaatgaa attaagtcac ttaaggaaaa cgaaacgtgg      2640
     gagcttgtag acctaccgaa ggatcgtcgt gcaattggat gcaaatgggt atataaaata      2700
     aaatcctatg gagaaaatga aatattcaaa gcacgactgg ttgcacaagg tttctcccaa      2760
     aaatatggaa tcgagtatga tgaagtgttt gctccagtgg taaaacatgc aacatacagg      2820
     atcttattca ccgttgcagc cagaaagcaa atgaaagtta ttcatctcga tgctaagagc      2880
     gtttctaaac ggaaaattaa gtgaaacaat ctacatgaaa caaccccccg gcttcacaga      2940
     agaaggaaga gaacatcagg tttgtctctt gaggaggagt atatacggct tgagacaatc      3000
     cgctagagtg tggaatcagg aaattcatca aacacttaca gctgcgggtt acatacaaag      3060
     caaaaatgat ccatgcctgt atattaagta taataaaggt aagatctgtt acgtactaat      3120
     ctacgtcgat gatttgattg ttgccagcga agatgataat atgttagaag aatgcgagaa      3180
     gattttaagc gcaaaattca aaataaaaaa tcttggagat gtccgtaatt atcttggttt      3240
     gcaaattaaa cgggacacca atggaaactt cgcactcaat cacaagcggt acatcatgaa      3300
     gatcatcaaa gatttcggta tgatggaagc aaaaacttcg aatgttccaa tcagcgtgtc      3360
     atacggcaaa ggtggaaatt ctgagttact tatagataac gaaaattatc gtaaattagt      3420
     tggttgtttg ctttacatcg ctgtgaatac aagaccagac atatcagcga gtgtgacaat      3480
     cttggcacaa aaggtgacaa aaccaacaca ggaagattgg aatgaactaa agcgtattct      3540
     tcgatatctc aagggtacag cagacctttc gttgatgctt ggtggcatca attgtaatac      3600
     tggcctcgtc ggttatgccg atgcaaattg ggcagaagac gtcgcgttgc aacaacgcaa      3660
     gtcgactacc ggctacgttt ttaagtattt tgatggagtg atcagctggt gtagcaagag      3720
     acaaacttgt gttgctaaat catccatgga agctgaatat attgcactat cagaggcaag      3780
     cagtgaagcg ctatggattc gtcgattatt gagagacttt aagcagccgg aagaggaccc      3840
     aacaaccatc tatgaggata atcagagctg cttgaaatta atcaaagaag agaagctgtc      3900
     aaatcgttca aagcacattg atgtgcatgc atattttgtc aaggatcatg tagacaaggg      3960
     aactatcaaa tgtgtttatt gcccaacaga aaacatggtt gctgatctat tgacgaaacc      4020
     attgtcagcc aatcgaatcg taaaattacg agagacttgc agtctgatgg aaatttgaat      4080
     gaggaggag                                                              4089
//
ID   Copia-15_SI-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   AEAQ01019900;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-15_SI_;
KW   Copia-15_SI-I; Copia-15_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-286
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01019900; Positions     430     145.
XX
SQ   Sequence 286 BP; 76 A; 52 C; 40 G; 118 T; 0 other;
     tgttgaatta attcatttac attcaaatta ttattattca cttaattagt ttgttagact        60
     tattatattg gtaacacaca tattggtgta agcgtgttgt cagcactgaa atgccgtagt       120
     tctttttacg ccataaagtt tacagacctc tctctctctt gtgtgttgtt actctcttgt       180
     gttacgcttg ttatcgctta caagagtctt ttcagtaata tacttgcatt ataataaagt       240
     tatactcatc aagtctgtct tcagcatatt ttctaatccc agcaca                      286
//
ID   Copia-160_AA-I repbase;    DNA;    INV; 4107 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-160_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4107
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4107
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1433-1433 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4107 BP; 1166 A; 833 C; 1160 G; 948 T; 0 other;
     ggtcatgggc ccagagtagg aagcgtaaaa atcggaacga ttgtgttacg gaagtcgcgg        60
     attttttcgt cgcgagtgtt ttttcgttgt ttgcacgcga gcacacaaca ggaggagaaa       120
     atggcggagc agcgtttccc aatgccaaag ctgacgaacc acaactatca agtgtggaaa       180
     tttaaaatgg aaatgctcct agtgagggaa gagctttggc atgtcgtgtc cgaagcgaag       240
     ccggagccgg tgacaccgga atggacaaaa gcggatacca aggctcgtgc caccattggt       300
     ctatgcatag acgacagtca aacgagcttg gtacggcggt gtacttctgc aaaggacgct       360
     tggaaatccc tcaaagacta tcacgacaag ggatcggaag tgtatttgtt gaaaaagctg       420
     acccatctcg aattagcgga aggaggtgac atggagcagc acttgcagga cttcactgag       480
     ttgctgcagc gcattgctga catcggagat gaaattccca gaaaatggca agttgcgatg       540
     ctgttgtgtt ctgtaccgga atcatacgat gccttagtga cagccctcga gcagcggacg       600
     ggtgacgaac tgactcttga gttcgttaag tccaaactgc tggcagaagc agaaaaacga       660
     cgagagcgat cgggagctgc tgttgctgct ggcggcaaag cattgaaagc ggaatatcat       720
     cgcacacgta gccgtggcgg aggaaaattc gttgctagtg gtagtgtcaa caatgaaagt       780
     cgggtatgtt accactgcaa acgaccgggt cacttgaaaa ggaattgtcg acagctacag       840
     aaggaatccc tcgatgaacc aggaaagaag aaggaaggta acgccacgaa gaaagaagaa       900
     gatcctaaag tgaagcaagt tcaaagcgta ctggaaggac cagttgcttg gattgtcggc       960
     catggagaac cgtccagttg gttcgttgac agcggggcct cccggcacat gacggggaat      1020
     cgacagttct tcaaggatct gaagcctacg aagggattga gtgtcacgct ggccgatggt      1080
     gaaaaagcgg aggtggcagg tatcggagct ggtacgctcg ttgcggttaa cgggcatgga      1140
     aaggccaccg aagttgccat ggcagatgta ttgtacgtac ccaagctgac aagtggttta      1200
     atctcggtga gtacccttac tagtaagagt tttcgggtga cgttcaatga gcatggcggt      1260
     gaaatttgta acatcggtgg cgatgtggtg gctgtggcca gtcgctatgg gagtctgtat      1320
     aagctgtgca caccggagca agcgttgact agtgtgcagc catctcattc gttggagtgt      1380
     caacacactt ggcaccgtag actcggacat cgagatcccg aagctgtcaa ggcaattttt      1440
     gaggatagtc aagcggccgg acctaaattg gtggactgtg gaatcagaac gacttgccgt      1500
     tgctgcctag aggggaaaat ggcacgaacc cctttcccga aagcagtgga tcgtggttcg      1560
     aaggacgtat tggacgtggt acacaccgat atcagtggtc cgatggtcag tactccaagt      1620
     ggaaataaat atttccttac acttatcgat gattttactc gaatggcgtt tgtgtttctt      1680
     ctccggcaga aatctgatgc agccggcaag atacaagagt tcgtggcgtt ttgtaagact      1740
     caattcggca agacgcctcg cattttgcaa tccgatggcg gaggcgagta tataggccac      1800
     gatctgcaga gcttcctgcg aaaggaaggg attgtgagtc agttaacagc accttactct      1860
     ccgcaacaga atggtgtggc ggagagaagg aatcgatatt tgaaggaaat ggctttatgt      1920
     atgttgcgag atgctggcct aaatgagagg ttctggggcg aagctgtact cacggcagca      1980
     tacatccaaa accgtgtacc gacgcgaaca ttgggaatgt ctccattcga gaagtggtat      2040
     catcagaagc catcctacga tcgttttcga atctttggat gtgaagcttg ggttcaaatt      2100
     cccgccgaac gacggaagaa aatggagatc aaggctcgga agcttatttt tgtcgggtat      2160
     tcaaaccagc ataaagctta ccgatttcta gacaagtcaa atgaccgtat tattatcagc      2220
     cgggacgtca aatttatgga agacgtaaca tgggataagg aaccatcgac gaaagctgct      2280
     gagccgatta aggagcaaga ggagtttgtt gtggagctag atccgttgca gccaactgaa      2340
     gctgaaggcg ccgaaaatgt ttcgaactac gagagtgccg aagacgaagc ggatcaagaa      2400
     ccagatagat caactaccgg acccagtgga gtgcctcgtc ggtcaactag gggagtaata      2460
     cctgcgagat tgaacgatta tgtgctagga ttggcagctg ctgactgcgg cggagaaccc      2520
     tcaacattcg aagaagctac gacatgcaca gagaaggaca aatggctaga ggcgatcaac      2580
     gaggagcaca agtctctcat tacgaatgga acatgggagc ttgtagatcc cccagatgac      2640
     tgcaacgtaa tcggttgtag gtggatattt aaaaagaagt tagacgccgc tggtaacatc      2700
     gaccggttta aagcaagact agttgctcag gggttcggac aacgctatgg atgggattac      2760
     gatgatgttt cggcccctgt tgcgatgcaa tccactcttc gagtattgct gactatagct      2820
     ggacatcaaa agttgcaggt tgagcactta gatataaaaa ccgcatattt gtatggaacg      2880
     ctggaggaag tgattcatat gcgacagcca caaggttttg tggttccggg caaggaacat      2940
     caagtctgcc gactgcgcaa gagtatgtac ggcttaaagc aagctgctcg agtatggtac      3000
     aatacgatga ctgcgatttt gaaggatttg ggattcgagc catgccaagg tgatacctgc      3060
     ttgttccgga aacgtctcga gaacggtcta ttgatgtttc tactattgta tgtggacgac      3120
     atattgattg cgtgcaagta tggtgagagg attaaagaag tggaagaagc tcttcgacgt      3180
     agactaacag tatcgacact tggtgacatt agctggttcc taggaataca aatcatgaag      3240
     gatagtgatg gattctacac tttgtcgcag gagcacttta ttaagaagat cgtaacacga      3300
     ttcgggctgg atggagcaaa gggctctaaa tatcctatgg acaccaacta tttcaagctg      3360
     aggcttgaca gtgaaaagct gaaggataac gctaactatc agaagcttat cggatgcctg      3420
     ctgtatcttt ctacacatag ccgccccgac atcacagcat gcgtaggcat actgagccga      3480
     tgtgtaagtt gtcctaccat caccgattgg acggaagcga aaagagttgt tcgttacctg      3540
     atctactcaa ttgactatgg gctgaggttg ggtacgaaca acgaacgaga actgttgtta      3600
     acgggattct gcgatgccga ctgggcaggc gatacgggag acagaaaatc gtgtagtgga      3660
     ttcctgtaca ctttaggagg agcgactgtt tcatggacga gccgtaagca gggatgtgtt      3720
     gcaatgtcga cgatggaagc agaatatata gctctttcgg aggctgtgca acaagcgatg      3780
     tggttgcgat ccctattgga ggaaatggat cagaaacaag tcagagcaac agttattttt      3840
     gaggacaacc gaagctgtct ggacttcgtc gctcaagacc atcagaaaca gaggtccaag      3900
     cacatcgata ctcgactgca ctatacgaag gatctgtgtg catctggaaa aatcaaattg      3960
     aaatactgtt ctacagaaaa tatgactgct gatatcctca ccaaaccctt gggatcgctg      4020
     aaaatgaaga agttcgcatt ggagttagga ttagtatcaa ttccacgtta agaaggagtg      4080
     cgtcagggac gaatacacga ggaggag                                          4107
//
ID   Copia-160_AA-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-160_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-212
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-212
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1476-1476 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 212 BP; 49 A; 55 C; 46 G; 62 T; 0 other;
     tgttgggcaa ccccctgcaa tgcgtgaatc cgcccctgcc cgacgaacaa cgagtgggag        60
     ctttgtagag aaaaagcaca ttttcagtac ttttgtatcc gtcagtaaat aaacaagtga       120
     aagagtagtc tccgcgttga ttttcctttt ttactacgga attcccgttt ccactgcgtg       180
     tttggcctta ctctgtcctt ggtccgccaa ca                                     212
//
ID   Copia-161_AA-I repbase;    DNA;    INV; 4102 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-161_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4102
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4102
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1434-1434 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4102 BP; 1187 A; 743 C; 1206 G; 966 T; 0 other;
     ggttatggcc cagtaaatcg caaatagtaa aaattcgaga agatggagaa ggacgatttc        60
     gtgcgcgttc cgttattcga tggttcgaac tatccggcgt ggaagtaccg gatgctggtt       120
     gtgctggaag agcacgagtt aaccgagtgc atcagtcggg aaatcgcgga agtggaagaa       180
     ctgaaaatcg aagcagctga tactgctgct gtccaggcgg ataagaagaa gcagtttgct       240
     gcgcggataa aaaaagatcg tcggtgcaaa tctttattga tttctcggat tcatgataat       300
     cagctggaat acgttcagga tcagccgacg ccgaaagcaa tctggtcggc gttgcagcgg       360
     gtgttcgaac ggaagagcat agctagccgt ttgcacctga aaagaaagat gctgacactc       420
     cgtcacgaga ggggaagttt gcaggagcat ttcctcgtgt tcgacaaaat tgtgcgggag       480
     tataaaagca ccggagcaca aatcgacgat ctggatattg tttgccatct tttgctgacg       540
     ttggggccgg catttgctac cgtcgtgacg gcgttggaaa caatgccgga agaaaatttg       600
     acaatcgaat tcgtgaagtg tcgtctgctt gacgaagaga ttaagcagaa aagtggtggt       660
     gtggaagcta gcctgccggc tggtgattca gcagcatttt ctggagcgag taagaagaaa       720
     accggccagt atcagaagaa acagttcaag tgttttggtt gccacaaaga gggacataaa       780
     ttgtccgagt gcccggagaa gaaaaggaag ggatcgaata ggagtagtgc gcatttggga       840
     gaagaagaaa atggtgtgtg ttttgctggt gcaaggaaat tctcaagccg tgaagttgga       900
     tggatcgtcg attcgggttc gtcggagcac ttgacaaacg acaagagttt gttcaagcag       960
     ctgtcgccga tgaagaatcc gatgcagatc gcagtagcca aggaaggaga gtgcatcgtc      1020
     gcaaaggaac acggtgaggt acaactttac tctcaagtga atggtaagtc gattccgatt      1080
     actttgaaaa atgtgttgtt cattcccgaa gcgagagtaa atctgctatc agtgagaaaa      1140
     atggagacgg ccggactaaa agtgattttc gcggagggta aagtgtcgat tgaacgagaa      1200
     tccggtgcag ttgcggtggg taaccggcgc ggtaaattat atgaactgga cttataccgc      1260
     gaaaaagtgc ataaagactc ttcgtactat tcgtgtgggc ggataccgaa agggcttgag      1320
     atttggcatc gccggtacgg ccatttgagt ggaaagaact tgaaactttt gatacgtaat      1380
     aatatggtaa ccggtatgaa agtgaatatg gatggaaaat tcgcggacga aatcgtgtgt      1440
     gagccttgca tcgtcggcaa gcaatcaaga aagccatttt cggttggaga agagcgacgg      1500
     tcgacgcgag tgctagagct catacattcg gacgtatgtg gcccggtgac accggtgggc      1560
     gtcgatgggg aaaaatactt tgtgactttc attgacgact ggagccgttt caccgtcgtg      1620
     tgcttaatca gttcgaagga tcaggtagtg gacgttttcc gcgaatatga agccatagtg      1680
     tccgcgaagt tcggaagaag tatctcgcgt tttcgttgcg acaacggtac ggagtacaag      1740
     aatcgggctt tcctgagttt ttgcaaggag aagggtgtgc aaatagagtg gacggtgccg      1800
     tacacgccgg aacaaaacgg taccagcgaa cgcatgaaca gaacgcttgt agagaagaca      1860
     cgatcgatgc tgcaagattc tggggtgagt agtgagctgt ggggttccgc tgttcaaact      1920
     gcggcgtttt tggcgaatcg cagtccagca agcgctatcg gcgagaagaa gacacctttc      1980
     gaaatgtggg aaggaaagaa accaaacgtg gaaaagcttc gagtattcgg atcggatgtt      2040
     tttgtgcaca ttccgaagga gctgcggagg aaactcgacg gcaaatcatg gaaaggagtt      2100
     ttcatcggat actcacataa cggctatcga gtatgggatc caaggcggaa gcggattgtg      2160
     gtggcacgag acgtgatttt tgtcgaggat agaggtgtga agcaagcgga tcctagaaga      2220
     agtattggaa acagtgaaat cgttcgggtt cctgtatctt cccgagaagc ggattctagt      2280
     gatgatgaaa gtgaagaagt aaccgatccg gcgaatgaac atgaagacgc agaagagcaa      2340
     agtgacctgg agcaaaatga agaggacaat gagggagaat atgaatcctg tggggacgat      2400
     acgcttcgtg gagaaatatc gcaggaaatg agtgaagaag ccaggagtga ctggcggccg      2460
     cggcggaatc gacatgctcc ttcttggcac agtgattatg atatgaacat taccggatat      2520
     gcgttgaacg ctacgagcta cgtggagaac ttacctagtt cgttgtgtga gatggaaaaa      2580
     cgagcggatt ggccaaaatg gaagacagct attcaagaag agatcgatgc actggagcgg      2640
     aatcatacgt ggacgctagt gaaacttcca gaagggcgtg ctccgatatc ctgtaagtgg      2700
     gttttccggg tgaagagaag tgaaaacggc gaagaagatc ggtacaaagc aagacttgtg      2760
     gcacgggggt ttacgcagcg atacggattt gactattccg aaacgtattc cccggtggca      2820
     aagctggaca cgctccgtgc agttttagcc attgcaaacc aagaaaagat gacagtccac      2880
     caaatggacg tgaagtcggc ttttctgaac ggatcgatat ctgaagaaat ttacatgact      2940
     caaccggaag gatatgtgaa agggaagaac ctagtgtgta aattgaataa atcgctctat      3000
     ggactgaagc aggcgtcaag agcatggaat gaacgttttc atagttttgt ggagagactt      3060
     gggttccgtc gaagcacaag tgataagtgt ttatatgtga agggtacggg acagaatcaa      3120
     atgtttcttg tactttatgt ggatgacgtt ttgcttattg gacgacactt gaagcttatt      3180
     gaagttgtga aaaagtgcct ttcgacggaa ttcgaaatga ctgacgttgg ggaaattaac      3240
     tgttttctcg gcatgaaaat cgaacgaaat gtcgaggaaa ggttattgag aattactcag      3300
     cggagttttc tggaaggact tttaaaacgg ttcaacatga gtgattgtaa accagtatca      3360
     acaccgatgg aatgcaggtt gcggctcaag aaaggagaag aatcgatgcg gacggacaag      3420
     ccatatcgag agttggttgg atgtttaatg tacgttacgt tgacatctcg acctgacctg      3480
     tgtgcggctg taaattattt cagccaattt caaagttgcc ctacggaaga gcactgggta      3540
     catttgaagc gcattcttcg gtacatacgt ggtactattg accttgggct ggtatttcga      3600
     ggagacgatg aagcgccggc aatggaagca tactcagacg cagactgggc taacgacctg      3660
     gtagatcgac gctcgctgac aggatttgtt tttcgtgtgc acggatgcac ggtcagttgg      3720
     ctaacaagga aacaatcaac ggtctcactc tcatctactg aggcagagct catcgctttg      3780
     tgtgtcacag tttgtcatgg aatctggctg actcggttgc taaaggaact aggagtgaag      3840
     ctggaagaac caatagttta cttcgaggac aaccagtcaa ccattcgagt cgtggaggat      3900
     gaacgagatg tcggaagatt gaaacacatt gatataaaat tccgattcgt acgagaactg      3960
     attcagcgag ggcaggtagc agtacgatat attccaagtg caaatcagct tgcagacgtt      4020
     atgacgaagg gattacctgg taaggcgttt ctgcaacatc gtaacaattt gggattgatg      4080
     aagttcggaa attgagcgag gg                                               4102
//
ID   Copia-161_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-161_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1477-1477 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 59 A; 55 C; 56 G; 94 T; 0 other;
     tgttgaggta ccaatttcca acccctactg tggagatgct cttagcgtgc gcatcactgg        60
     agttgctttt agctagcgcg ccattcctgt catcaccgtg cggttagcgc gcgctttttg       120
     ttactacctc attcgtgaaa cagttgtcga gcaaacaaga ctatgttaac ctttttgcta       180
     aagaataaag ttgtttgtta gtttaagttc attaaactag tgtagtgttt tagttattcc       240
     ggttgattgt ccgttttccc ataa                                              264
//
ID   Copia-162_AA-I repbase;    DNA;    INV; 4090 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-162_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4090
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4090
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1435-1435 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4090 BP; 1113 A; 845 C; 1182 G; 950 T; 0 other;
     ggtcatgggc cccgtgacgc gagtgcgcga ataatgtgga tcgcggacag tgtggtatga        60
     aaaacgaatt aaaagtcggt ttcgcggtgg aaaaagtttt cggcgtgtga acattgcgtt       120
     ttttcgcttg cagagcaaaa tggcggcgaa catgagcttg ggcgtagaaa aattgaacga       180
     ttttaactac gagctctgga agttccgcat ggagctcttg cttatcagag aaggagtgaa       240
     aaatgtgatc gatgagcaaa tgccgcaagt tccaactgct agttggatac acaaggacgg       300
     gaaggcccgt gctttgattg gcctatcaat cgacgatagc caaacgtgtc atgtcctgca       360
     tgccgcgtcg gctcgcgaga tgtggctctc gctgaaaaat tatcatgctc ggtcttcact       420
     agccacaaaa atacatgttt tgcggaagct tttccgaatg catttgccgg acgacggaaa       480
     catggcggat cacctgtcgc aaatcacgca gctggcaaac aggttgtcga acatggggga       540
     tccgttgaag gactactggc tagttgctat catcctgtca agcctgaacg aatcctacga       600
     tggcctcatc acggctttgg aaagtcggcc ggaggctgac ttgcagctgg aattcgtgaa       660
     ggggaaatta ctcgatgagt ggaggaagcg gcttgaaaaa tccggtgaaa gtgctggtgt       720
     tggaagtgaa aaagcactga agacggaagt gagtgtgaag aaaaatgaaa agaagaagaa       780
     ggaaaaagtg tgccactatt gtggcaaaga aggccacttt cgaagggagt gcagaaagct       840
     agagtatgac cggaagaata aagaaaaagg cagtgtgagc aatcagaagg caaatattgt       900
     tgttgaagaa gacgaagcgg atgaagtgtg tctggccacg gggaaactcg gtggcgaatc       960
     tggtgatgtg gtatggtgtc ttgattcagg cgccacatcg catatgacca gcgatgcaac      1020
     gctgctggaa aacgtcatca aagtgaatac gactgttggc ctggctgatg gtaacaagat      1080
     cgctgcagtg ggtgttggct ctagcagatt ccgttcgttg ggtggaaatg gtaaggatgt      1140
     gcctgtgtca gtcaagcagg tctaccatgt accggcgttg actggaaacc tactatcggt      1200
     aagtaaacta accgatgagg gttgttccgt gtcgtttacc aagacgggct gtgacatcca      1260
     gaaagatggc aagattctgc ttcgtgctga aaggtgtggc aatttgtatc gcttgaagtc      1320
     gtcagtccag aaagcatttt cggcgactgt gggccataaa caggattgta tccatgtatg      1380
     gcatcgtcgc ctcggtcatc gagatgtaca agcgattgag aagatcgtcc gtgatgactt      1440
     gggaaccggg ctgaaattag aaaagtgcac tgtgaaatcc gaatgtgggg tgtgctgcga      1500
     aagcaaaatg gcccgtgcgc cgtttcccaa gaagtctgcg tctatttcga gtgcggttgg      1560
     tgatctggtc cataccgact tatgtggacc tttggaagtg gcaacgcctc gtggaaaccg      1620
     ctacctgatg acgatggtgg atgattacag ccggtattgt gtcatttact tgttgatgaa      1680
     caaatcggag gccgctgaga aaatcgttga gtactcgagg atgctgcaga atcagttcgg      1740
     ccggctgccg aaggttatcc gttcggatgg aggaggagaa tactccagtg ctccattgag      1800
     gaaatttctg gctgataacg gaatcttatt ggaacaaacg gcaccgtata gcccccaaca      1860
     aaacggcaca gcggaacgaa agaatcgcac tttgcaggaa atgatgcggt gtcttttgtc      1920
     ggaggccggt ttggcaaaac aatattgggg agaagctgtg acaactgcca acttgctttt      1980
     gaatatactg ccgactactg cgattgacgt tacaccgtac gaacgatggt ggggaaagaa      2040
     accaaactac tcctttctac gtgtgtttgg aaccgaagcg tatgttcacg taccggatgt      2100
     gaaaaggcgt aagctggatc ccaaagcgac gaaaatggtg tttgtgggat atgcggaagg      2160
     gcgtaaggct taccgtttcc ttgaccttac gacaaatcgc attactgtga gtagggatgc      2220
     taaattcctt gagcagtctg gagttcgtga ggatgtcgaa gcgagtacga gtggagttac      2280
     gaccacgaga gcaagccatc tgctgcagct gccagtgtat gaagacgaag atgctgaaga      2340
     ggaagtacgg atggaagaag ccgaagaaga atcggatgac agcaatgctt cccaggattc      2400
     agaagaaggt gatcgtcgtg ttgttgagtt ggaacagatt ggaacacttc gtcgttcgtc      2460
     gcgtatcaac aaaggcgttc ctccacgacg gctgctggaa gagatattta gtgctcagac      2520
     cgaatccgag gaagaaccac agagcttgca ggaagcctta tctggacccg acgaggctga      2580
     atggcgcgct gccatgaagg aggagattga atcccacaac aggaatggca catgggaatt      2640
     gactgaactg ccagcaggcc gtaaagcggt aggttgtcga tggatttata aaatcaagcg      2700
     tggcgcctcg aatgagattg tcaaacataa agcgcgttta gtagctcagg ggtatactca      2760
     aaggtacggg gaagattttg aggaaacctt tgcccctgtc atcaaacaga caacgcttcg      2820
     cacattacta gctgtggcgt ctcaacgcaa tcttactttg cgccacttag atgtgaagac      2880
     tgcttacctt tatggtaacc tgaacgagga gctgttcatg aaacagccgc ccggtttcat      2940
     cgtgaagggt aaagaacgac tcgtctgcag actgcgccgt agtatttatg gtcttaaaca      3000
     atcggccaga tgctggaacc agcgtctgca caccgtgttg cagcaactgg gcttcaagca      3060
     aagcgagaca gatcaatgcc tctattccaa ggtcgtcgat ggatcgccaa tctatttgtt      3120
     gatttatgtt gacgacatcc tcgttgcatg ccggagtgca tctgaaatcg acaaggtgac      3180
     cagagcactg aagaaagagt tcgacatcac agacttggga gagccgagct actttttggg      3240
     actggaaatc caacgacatg atgggaagta cagtgtttgt ttggagggct acattgacaa      3300
     aatcgctaga aggtacggac tacaagctgc caaggccgct aagagcccca tggatactgg      3360
     atttgtttct acggttgata acagtgctcc attttgcaac aattcagcgt atcggagtct      3420
     cgtgggtgcc ttattatacg tagcagtgtg tgctcgaccg gacgttgccg tgagcgcttc      3480
     tatcctcggt cgaaaagtct gtgcacctac ggaaaatgat tggaacgctg ccaaaagggt      3540
     tcttcgctat ttgatctcaa ccaaaggcgc tcgtttagag tacaacagcg atgcaggctt      3600
     gatcgggttc tcggacgccg actgggcggg cgacgtcatg actcgtcgat cgactaccgg      3660
     gttcgccttt ctatacgctg gaggagcaat ttcttggggt agcaggcttc aacattgtgt      3720
     taccctcagt tcaatggaat ctgaatacgt ggctctcgga gaagccaccc aagaagcggt      3780
     atggttgaga agattgctta aggatatggg tgaaactgtc gttgggccaa catgcatcaa      3840
     agaggataat cagggatgca tacagtttgt gcagtcggac cgagtcagtc gcaggtcaaa      3900
     acatatagag acgaaggaaa gatacgttcg tgagcagtgt gaccagaaac taatcaggct      3960
     tgagtactgc tccaccgaaa caatggcggc agacctactg acgaagccac taggaacgac      4020
     gaaggtaaag cagctatccc gattgcttgg attatctaca gggaaggtag cggcacttgg      4080
     tgaggaggag                                                             4090
//
ID   Copia-162_AA-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-162_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-218
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-218
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1478-1478 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 218 BP; 55 A; 55 C; 32 G; 76 T; 0 other;
     tgttagaatt tccaccacct gccgctagag tgtcacacga cgacaacatc aagagagaac        60
     gacccatgta ctttgctttt gacattcttt tgtatttccg tttccttttt cattctcgtt       120
     cattcactcg actcttgtgc aaatcgaatc gctacaaata aaaacgttcc gttgtaaatc       180
     tcgttttata cctgattatt gtccgatttt gcccaaca                               218
//
ID   Copia-163_AA-I repbase;    DNA;    INV; 4111 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-163_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4111
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4111
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1436-1436 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4111 BP; 1142 A; 796 C; 1196 G; 977 T; 0 other;
     ggttgtgggc ccaggtgccg gaagtgattt gagtgtgttg tgattgtttt tttgcggtgt        60
     cgagagccgg ttttccggaa agtgattgat tccgaagaaa gaaacggcgt gcgtgtggta       120
     gaaaacaaaa tggcggacgg catgaaggtg tcttttgcga agctaagtgg tggtaattac       180
     gtttcctgga aattccggat gaaggcgcta cttgagcgtg aagaatcatg ggaagtgatt       240
     gccgagccaa agccggagga ggaccacgag aattttgcgc agtggaagaa gaaagatgtg       300
     aaagctcgtg cgactatttc gttgttcatt gatgatagtc agctaagatt cgtgaagaaa       360
     gctgaaacag cgaaagatat gtggaacaat ctaaaaacct atcacgagaa ggcgacgata       420
     ggtacccagg caatgctcct gcagcaattg tgttcgatca accttagtga aagtggtgag       480
     gtagagaagc acctcgaaga aattgagaac ctgtttgaaa ggcttgacag tgcgggtgtt       540
     gatctcagtg agcaattgcg ggtaattatg atgctgcgta gtttgcctcc atcgttcgcg       600
     agttttgtaa cgtcgcttga aaatcgtgct ccggaagatt taacaatgga cttggtggtt       660
     gctcgtttgc gcgatgagtg caataagcga gcgggttcga gtggattcgg tgtgcgagaa       720
     gaaaaagtcc tcaagactga ggcaaaagtg aacagcgaca aggttaagtg cttcttttgt       780
     aagcaacctg gccattacaa gagaaattgc cgtaaactag ctgcaatgaa gagcaatgac       840
     agttcaagtg attcgaagaa gaaatcctct ggacaggagg ccaaaaaggt gcaagcggga       900
     agtgagcagc agccaaaacc ggtggcggca gatgattcgg tctgtggtgc cttgtgtttc       960
     gtggcgggtg gtgctattcc gggcgcttgg acaatcgata gtgggtgtac ttgtcatatg      1020
     acaaatgaca gggaattctt cgtcgagttt aagaacaatg ttgttgttga cgtcacattg      1080
     gctgacggta cgcgcacgaa atcgtgtggt gtgggcagtg gaaacgttat tggtgtaaac      1140
     ggtaatggcc agcgtgttgt gattacattg gaaaaagtgc tgtatgtccc cgctttggag      1200
     ggcggactgg tttcggtgcg ccaactggcc gaaaaaggat tcacggtagt gttcaaagtg      1260
     aacggatgtg aaatccaagg tgccgagaat aaagtggttg cagtcggcga gcttgttgga      1320
     tgccaataca agctgaagat tggcgagcag tgtaaggcgg taaaagaatc ccataccgat      1380
     gtgtgtcaac acacatggca ccggcggttc ggtcaccgcg acatgaacgt ggtaagtgct      1440
     atcacgtcga aggaactggt cagcggtttc gaggtcaagg actgcggaga gcgagtagtc      1500
     tgcgagtgct gcatcagggg taagttagca agaaaacctt tcccatcgtt aaaagagcgc      1560
     cggtcaacgc agccattgga tctgatacat tcagatttat gtggtccaat ggaaaatgcg      1620
     acaccgagcg gaaataaata ctttattacc ctgattgacg actacagtcg tttttgtgca      1680
     gtattcctcc tgaaatcaaa aagcgaggcc gaacacaaaa ttcgggaata tgtccgatgg      1740
     accggaaatg tgtttggtcg aaaacctaaa gtaattaggt cagatggagg aggcgaatat      1800
     gtcggcgaga gtttgcaaga gttttacaag gccgagggca ttcgctcgca gtacaccacc      1860
     ccatatacgc cgcagcagaa tggggtagca gagaggaaaa atcgcagttt gcaagagatg      1920
     gccaactgta tgctgctgga tgctgggctg ccgaagtgtt actggggcga ggctgtgctc      1980
     acagcaaact tcgtccagaa ccgattgcca tcacgcgctg tggataagac tccttacgag      2040
     ttgtggacgg gacgtgtgcc agatttggcg gagctcaagg tgttcgggtg tgaagcgttg      2100
     gttcacgtgc ccgatcaaaa gcgtaagaaa tttgacccga aagctacgaa gatggtgttc      2160
     atcggctact caagtcagca caaaggctat cgcttccttg accgttcaac aaatcgtgtc      2220
     actatcagcc gcgacgcgcg ctttttggag ctgagaaacg gcacagaaca gttggaggag      2280
     gagctgaaag ttccggagat tcctgtgggg cagcgtggtg agagtgtgaa cgacaatgaa      2340
     gaagttgttt tggaaaatca cgaagaacag ttgcaagtgc aagatgaaca agaacagtcg      2400
     gaatatgatg atgctagtga gatgaacgat agtgatttcc tgggcttcga gccggacaat      2460
     caagaggtgc aaccagtgct taacagaggt gatcgacgca ctcggggagt actgcccggg      2520
     cgttttgagg attttgtagt ggggcaagtt acagtggatg aagagcccga agatcattgt      2580
     gaagctttgc aagtgcctga ttggaagaaa gctatggagg tggaaatggc ggcgcacgcc      2640
     gcaaatcata cctgggatct tgtgcggcta cctccaggaa agaaagttat cggaacgaaa      2700
     tgggtgttta agcttaagcg agatgctgaa ggtagcgtgg tgaagcacaa agcgcgtatt      2760
     gttgctaagg gctataccca gttatacgga attgacttta cagaggttta cgctccggtt      2820
     accagacagg cgacattacg tgtattactg gcagtggcta gtaagaaagg tatgatactc      2880
     aaacagtacg atttcaagac ggcgtatctc aacggtacgg ttaacgagga actgtacatg      2940
     tctcagccac ccggctttgc catcaaagga aaggaggatc tggtgtgcaa actgcgcaaa      3000
     agcatctatg gcttgcggca gtccgccaga tgttggaata aaaccctgca ttcagttctg      3060
     atggagttac agttcaaacc ctgcgagtct gatccgtgcc tttacgtacg tcatggacaa      3120
     agtgtcgtgt acttgatagt atacgtggac gacttgatca tcggaatcgt tgatgaagaa      3180
     gagattgagg aagttttcaa gtgtctccgt gataagttcg aggtcacatc tctcggcctg      3240
     attcatcatt ttcttggata tgagatcgag agagaggatg gctgctattc ccttcgtttg      3300
     actccgtata ttgaatgcgt acttcgtcga ttcaagatgg acaattgtca taccgtgaag      3360
     actccaatgg atctcggata cattgccgaa aatgaggaca gtcaaccatt tgaggataca      3420
     acgttgtaca gaagcttgat cggcgccctg ctctacctgg cggtcaacgc aagacctgat      3480
     ctatcactga gcgttggatt gttggggcgc aaagtcaagg aaccaaacaa aagtgactgg      3540
     aatgctgcga agagaatttt acagtatctc aacggcacaa agaatctcaa gctgaagttc      3600
     ggacccaagg acggatggaa cctggtagga tattccgatt cagactgggc cggagacaga      3660
     cgtactcgac gatccactac tggttttata tttttctacg gcggaggacc agtcagctgg      3720
     accagcaaag gccaggattc ggtagcccta tcatccttgg aggccgaata caacgcttta      3780
     accttggcct gccaagagac gatgtggcta cgacgacttt tagaagagat ggacgagcgt      3840
     caagagaatc ccacaacttt gttcgaggac aacatgggat gcttgagttt cgcaaaagcg      3900
     gagcgttcta gtggacgagt aaaacatatc gatacgaaaa ggaatttcat acgtgagttg      3960
     tgcgtacaga aaactgttga tttagtgtat tgccctagtg aagatatggc agccgacgct      4020
     ttgacaaaac cagtcggtcc tgccaaattg agtatctttt tgaagaaaat tggattgcaa      4080
     ggacaataaa aggatgttca tccaggagga g                                     4111
//
ID   Copia-163_AA-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-163_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-245
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-245
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1479-1479 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 245 BP; 53 A; 55 C; 56 G; 81 T; 0 other;
     tgttgggaat ggatgagcac cttagtgtat agccaccttg gcttaagaga agaaaaacaa        60
     tgtcgaagct gacaacactg tatgcaataa tttttcagtt tcaataaagc cagtgacttg       120
     tgtacacgtg cctcaagttt tttctatccg agaaagtgtc cgcggttctt ttgtctgctc       180
     tcggcgtttt ccattcgtct tcccggtggt tccgttgctg ctctgctggt gtgtccactt       240
     catca                                                                   245
//
ID   Copia-164_AA-I repbase;    DNA;    INV; 4112 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-164_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4112
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4112
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4112 BP; 1096 A; 781 C; 1269 G; 966 T; 0 other;
     ggttatgggc cgagcgcgtg ctagtccaac cgcgtgttag tgaaaatttt tcgggaaagt        60
     tcgatttcgt tttttattac ggtgcgcgat ggaggatgac gtgaaattcc ttcggataaa       120
     gcctttcgac gggacgggct tcaataattg gtgcttccgg atgaaggcct acatgcagca       180
     gctggaagtt ctccgctgtg tcgagaaggc agccgaggag gaggatttct ggaatactcc       240
     cgaaagcgcg atggcggatg tgaaggcggc ggatgaagtg aaaagggccg ctcgagttcg       300
     ccaggataac aagtgtcgtt ccatccttat tcaaggtatt gccgatagcc acctcgaata       360
     cgtgaaggat aaggttagtc caaagcaaat ctgggatgga ctccacaatg ttttcgagcg       420
     gaaaagcata actaatcgct ttctgctgaa acgccagttg ctttcaatga ggttcgatga       480
     gagcaaccgc ctgcaagacc acttcctgaa atttgatcag ctggtccggg agatcaaagg       540
     tgctggtgca aagatggagg aggaggacgt catatgccat ttgatgctca ccatgccgtc       600
     gtcgtatgat gcggtcacga cagccattga ggcggtgtcg gacaatctga cgatggatct       660
     tgtgcggaaa aagtacctgg atgtggaggc caaacggcgt ggccagaaga tggatgaagt       720
     ggtggaagaa acagcttttg ctggcggcaa gtcgaagcca aagttcaagt gtttttcttg       780
     tggtgaagtg gggcacaaaa agtcacagtg ttcgaagatt agtgctagtg gggccggtaa       840
     acaacccggg aagaagcaga tgcagaaggc aaatgtgtct aagtcggttg cgtttgtcgc       900
     ggcggatggt tccgttgctg cttcgagtgc ggcggttgga gaaaagtggt tcctggatag       960
     cggagcatcg gaacatatgt gcaatgagaa gagtctgttt gagagtctgg aagtgcttga      1020
     aaaaccagtg attgttcaaa ccgcaaagac tggcgtaaat ctttttgctc acaagaaagg      1080
     tcgtgtgaat gctctatccg tagtggggga tgaagtaata aacataaata tggacagtgt      1140
     gctgtacatt ccggaacttt cgttcaacct gctgtcattg cggcgactgg aaaacacagg      1200
     taagaaagtc attttctttg ggggctgtgt taccgtcgaa agtgaggggg aggtcgttgc      1260
     gacgggcagg cagtatgggc agctttacag tatggatttt gagtgcaaac ggaagggtga      1320
     ctgtagtgct atggttggta tggttagtcg aaaattagaa ctgtggcacc accggtttgg      1380
     gcacctaggg gaagaaaatc tgaggaagct gttgaagaac gatatggtgc tggggatgaa      1440
     cattgacagt gttgatcggg ataattcgaa gtttctgtgc gagccgtgtg ttacggggag      1500
     acaaactcgc ggaccattcc aatgtcgcac ggaaaagcgc gcaagcaggc cattagaaat      1560
     cgtccacagt gatgtttgtg gacctgttac accgaagtca tgggatgggt tccaatattt      1620
     tgtgtccttt acggatgatt acactcatat ggcggtggtg tatttgatgc ggtcgaaaga      1680
     cgaggtcctt gaccggcttg cagagtatga ggccatggct agcgcacact ttggtgcgaa      1740
     gatctctcgt ttaaggtgtg acaatggggg ggagtacacg ggccgtgctg tgaagacttt      1800
     ttgtaagaag aaagggatac gcttggaaac aaccgttgct tacacaccgg aacagaacgg      1860
     tgtgagcgaa aggctcaacc gcacagtggt tgaaaaggtg cgcgctatgc tagcggccag      1920
     cggtgtgggt aagcaatttt ggggggaagc gttgtatacg gcagtgtatg tgttgaaccg      1980
     aagcccaagt gttgcagtgc agggggatgt aacgcctttc gaggcttggt acggcaagaa      2040
     gccggacgtt tccaacttgc gggtttttgg tagtgagtgt ttcgcacaca taccgaagca      2100
     attacggaag aaactggact caaagagtga aaaggtgatg ttcgttgggt atgcaccggg      2160
     agggtaccgg gtttggaacg ggaaaagagt gtttgtggct cgggatttgg ttttcaatga      2220
     aacggtgaac ccaaactgtg tggtgcgtga tgccaaaaac gacctgaaga ctggacatga      2280
     gaacattgtg atcattgagc aaaaatgtga gccaaagact gatgcgggac attgcggaca      2340
     agattgtgac tctgaagact acttctctga gtgcgaaagt gtgactggaa gtgaagaagc      2400
     tgagggtgct gtgggaggtg aacagcctgg cggcgttcct ggcgacactg tgtccagcaa      2460
     cagagcacga agaagcggaa gagtggtgat gcctcctgca tggcaaaagg actacgatat      2520
     ggatgtgtcg gcgtttgcat tgtgcgcgga ggagttcata gacaacattc cgtcggacgt      2580
     cagtgaactg aggaagagga gtgattggtc ttcctgggag gaagcaataa aagaagaact      2640
     cagatcgctg gaaaagaaca aaacgtggac attggtggaa ttacctgctg ggaagaaact      2700
     ggttgacaat aagtgggtat tcaaaatgaa gaagaatagt gatggtgttg tcgaacggta      2760
     caaagcaagg ctggttgctc gcggtttcac gcagcggccg gggttcgatt tcaccgaaac      2820
     atattcgccg gtggcgaaga tgtcaaccct gaggattttg ttggcattgg cgaatcacga      2880
     gaattggagt gttcatcaaa tggatgtgaa gtgtgcgttc ctcaacggcg gcttgcagga      2940
     ggaaatctac atgcggcaac ctgctggctt tgagaagggg aagcaccttg tctgtaagtt      3000
     gaacaaagcc atttacggcc tgaaacaggc atcaaggaac tggaatcaga ggttccacga      3060
     tttcatcgtc aagctggggt ataagcggag cgaacatgat ttctgcctct actatcgatc      3120
     atcgaagggc gtcgtgacgt acgttgtcat ttacgttgac gacattttgt tgatgagcaa      3180
     ttcggacaag gcaatcaagg agatcaaagg taagctatct gctgagtttg agatgaagga      3240
     cctcaacgag gtgaagagct tcttggggct gaacattcaa cgggatcgcc aaaagcggat      3300
     catgacgatc gaacagaagg cgtacgttga gagtgttctg aagcggtttg gaatggaaaa      3360
     ttgcaaggtg tcggccattc cgatggatcc caatctcagg ctggagaaag agcaggatcc      3420
     gaagatgttt accgacaagc cataccgcga gttaattggc tgcctgatgt acctgatggt      3480
     cacatcacga ccggacattt gcgtggcagt caactacttc gccggattcc aatgcggagc      3540
     aagcgagcaa cattgggtgc atctcaagcg tatccttaga tacttaagag gcacaagtga      3600
     tttcaagctg gtgtatggat gtgagaattc ggcggaagta ttggaggcgt tcacagacgc      3660
     tgactgggga aacgatccca acgatcggcg atcggtttcc gggttcgtta tcaaacttca      3720
     cggttcaacg gtaacatggg caacaagaaa gcaatcgtcc gtggcactgt cgagtaccga      3780
     agcggagctg atggcgctgt gccagggtag ctgtgagctg atgtgggcca tgaatctgct      3840
     ggactccatt ggtgttgctg taccgaaacc tgtcacgatt tacgaagata atcaatcgtg      3900
     catttcggta actgtcgagc ctcgaaagca caagaggatg aaacacatcg aaatacaaca      3960
     tttcttcgtg cgggagctga ttgaacgagg acgtgtccaa ctgaaatatt tgcagactgg      4020
     agatcaagtt gctgatttaa tgacaaaagg attagcgcaa atacgttttc gaaagctgcg      4080
     cgacatgcta ggagtaagca attgaggcgg gg                                    4112
//
ID   Copia-164_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-164_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1480-1480 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 163 BP; 41 A; 23 C; 34 G; 65 T; 0 other;
     tgttaaccat gaattggcac tgtttgaatt tccgtgtatt atcaattgac ttactttgtt        60
     ttaccgtgta tgatgagaga gatgaataaa gctgtcatta gtgtttagta ttccaactgg       120
     aacgaacgtg tttgtttttc tttctcgaga agtccgattg tta                         163
//
ID   Copia-165_AA-I repbase;    DNA;    INV; 4109 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-165_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4109
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4109
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4109 BP; 1121 A; 795 C; 1263 G; 930 T; 0 other;
     ggttattggc ccagtttttg cgtgtgacgg aagtgtattc tagtggaagt gtcgcgtcga        60
     gatgaataac gagccggaag tcgttcgcgt tccggtgttt gacggttcga acttcgcgtc       120
     gtggaagttc cggattcaag tagtgctcga ggagcatgag ttgcttgaat gtatccagaa       180
     cgaaatggcg gaggtggaag aactgcaagt gaaagaagaa gacagtgacg ctgtccgcca       240
     atcgaaagaa aagttggtgg aaaagcggcg gaaaaaggat cggcgatgca aatcggttct       300
     gatttcgcga atacatgaca gtatgctgga gtatgtacag gataaagcga cgccgagagc       360
     aatttggctc gctttggaaa aagtgttcga gcggcgcagt attgcgagta ggctgcacct       420
     gaagaaaaag ttgttgatgt ttcgtcatga ggggggcagt ctgcaggatc attttcttgc       480
     atttgatcgg attgtgcgcg aatataaggc caccggggca gtgatggaag atatcgatat       540
     cgtttgccat ctgctgctga ccttgggggc aaggtacgcg acagtggtaa cagcgatcga       600
     gacgatgccg gaggcgaatt tgacgctcga gttcgtcaaa tgccggcttc tcgacgagga       660
     gatcaagtgc aacggatcaa gtgtcgaatt ggttacctct aaacgggagt cagctgcttt       720
     tgctgggaag ccgaaagcct ggtcgaaaga aagtgtgaac aagatgaagt gttttgtttg       780
     ccacaaaccc gggcataaag cggtggattg cccggagaag aaagtgaaaa aggcaaacaa       840
     caaaggcagt gctaatgtgt cagagaaaag tgtgtgtttc gtcgccggca tgatcgccgc       900
     cggcagcgac gaagaaaatg gcagactaca gtggtatgca gattcgggtg ccacggagca       960
     catggcaaac gacagaaaac tttttgaaaa gttggtgcct ttgaagaaac cggttgtaat      1020
     agcagtggcg ttaaacggaa agtccgcgac cgcaaaatat tccggaacaa tcaaagtgat      1080
     tgcggtaaat gggaacaagc gacgcgagtg tatcttggag gatgtactgt ttactcccga      1140
     ccttcggtgt aatctttttt cgattcgaaa agtcgagatg gccggaatga aagtcgtgtt      1200
     tgaaaacggt ggcgtgaaaa ttcttcgaga ttcggaagtg ctcgcgtgcg gtaaacggcg      1260
     tggtttccag tacgaaatgg atttttatcc gaagaattcg aacagttcgg cgctgtattc      1320
     gtgtgggaaa atcctcaaat gtcacgaact gtggcatcgg cgttacggcc atcttagtga      1380
     gaaaaacttg gggaagatta tgtcaaagaa catggtgaag ggattggaaa agtgcgcgac      1440
     taacgataaa gccgaaacaa tatgtgaatc gtgtgttgat gggaagcaaa cgagaaaacc      1500
     tttcggtgaa cggtcggaaa ggcgggcgac gcgtgtgtta gaggttgtac acagtgacgt      1560
     gtgtggtccc atgacaccgg tcggtcacga tggtagtcgt tactatgtaa gcttcatcga      1620
     cgactggagc agatttacca ttgtgtacac catgcggtcg aaggacgaag tgttcggata      1680
     tttcaaacta tacgaagcaa tggctactgc caagttcggt gttggcattt cgcggttggt      1740
     gtgtgacaat ggcggagaat atcggagtgc tgaattcgac aaattttgta agcaaaaggg      1800
     tatcgaaatg cagtgcacaa taccatatac acccgaacaa aatggtgtgt ctgaaaggat      1860
     gaatcgcacg ctggaagaaa aggccagatc gatgctgttc agtttaggtg cagacaagaa      1920
     gttttggtgt gaggcggtgg agactgcagc atacctggtg aacagaagcc cggcaagtgc      1980
     gatcattgaa ggtaagacac cctatgaact ttgggagggt agaaaaccag atgtttcgat      2040
     gatgagagtt tggggaagcc ctgcgtactg ccacataccg aaagagcacc gaaagaagct      2100
     agacaagaag gcgtggaagg gaattttcct ggggtatcat tgcaacggct acaggatttg      2160
     ggacccgaag cgtggcaaag tcattgccgc aagagatgtc atcgtcgacg agaacggtgg      2220
     cgcccacaag attgtggaag accagaggaa cgtacagcag caatcgggga ttcaagagat      2280
     gatcagcata aagccttcag cggggaccga cagtgaatcg gatggagaag agcaagcaga      2340
     agaggaagga ctacctgaaa tgaacgaatc cgtcgacgag tacgtggact gcggtggcag      2400
     cgttagtgat ggtgagagtt cagcaggggt taaccagcaa gccgttccgg aaatagaagg      2460
     tagcgttcgg aaacgtgtac ctccggtttg gcagaaagac tacgagatga actattctgc      2520
     gtgggctttg aatgctgtca gctatgtgga gaattatccg gacacgctag tggagatgcg      2580
     gaagcgtgag gactgggatc tgtggaaagt ggctgttcag gaggagatgc actcccacca      2640
     gcagaacaac acttggacct tgtccgagtt gccggaaggt aggaaaccca tcacatgcaa      2700
     gtgggtcttc aaagttaaga agggtgatgc tgaaaccccc gacaggtaca aagccaggct      2760
     ggtggcacgc ggctttactc agcgttatgg ctacgattac gctgagacgt atgctccagt      2820
     ggccaaaatg gatacagtga ggactgtgct agcggtagca aatcaagagc gtctacagat      2880
     tcatcagctc gacgtgaaaa cggcattcct taacggaaaa cttcatgagg agatttatat      2940
     ggtaccaccc gagggtctca cggaaggatc gaagaagctt gtttgccgtt tgaatcgcgc      3000
     tttgtacgga cttaagcagg cttctagggc atggaacgaa cggtttcatc agttcgtcac      3060
     caggttggga ttcaagcgca gtgagaacga tcagtgcttg tatgtgcgaa cggtgaacga      3120
     cgagcggttg atcctagtcc tctacgtaga tgacattctc atcgctggac gtgatgtgaa      3180
     ggcgatctcg gtgatcaaga gctgcttgaa gaaggaattt gccatgtcgg accttggaga      3240
     ggtgagctgc ttcctcggta tgcgtatcga gagggatatc gagaagcggt tcatgaggat      3300
     ttcgcagaaa ggatacttgg agagcctcct tcggcgcttt ggaatggagg attgcaaacc      3360
     ggtcgccaca ccggttgagt gccatttgaa gctgaagaaa ggaactgaag cggagagaac      3420
     ggataagcct tttcgtgagc ttgtggggtg cttggcatac gtagcccaca cctcgcgacc      3480
     agacttgtgt gctgcagtga acatgttcag tcagttgcaa agttgtccga ctaatgaaca      3540
     ctggtgttat ctgaagcgca ttcttcgcta tgtgaaggga actcttgatg tcggcctgga      3600
     atttcaaggt ggtgaagctg aagcagcgtt ggtcgtattc tctgatgccg attggggaaa      3660
     cgacatcaac gatcggcgat cgatgagcgg ctacattctg cgagtcttcg gaggcacagt      3720
     ggcttggcta acgcgaaagc agcaaacagt ggcattgtct tcgacggagg ccgaatttgt      3780
     ggcactgtgc acggccgtct gtgaaggcat atggatgcga cggttgttgg gagatcttgg      3840
     tgttgttgtc aaaggatccg tggcgtatta tgaagacaac caatcctgta tgcgagtggc      3900
     agaagaacca agggatagtc gtcgtatgaa acacgtcgac atcaagttca actttattcg      3960
     ggaagtggtg caacgaggcg aaataagaat cgagtacatt ccttcggagc aacagttagc      4020
     ggatgttatg acaaaggggc taccatccgt ggccttcaag cgtctcctgg aggaaattgg      4080
     cgtaaggtgt tccagaaatt gagcagggg                                        4109
//
ID   Copia-165_AA-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-165_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-215
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-215
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1481-1481 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 215 BP; 53 A; 50 C; 39 G; 73 T; 0 other;
     tgacgagaga caatttcagt aacgggtact cgcacagccc tgtcggtgaa ctgtcagttt        60
     gacgttttgt tcttggcgcc atcagcagcc agtgttctct ttctatgtga gattttcttt       120
     cactctctaa cgaacattca gtgaataaac acgttgttaa ctttactctc taaagtcgaa       180
     tgtttaactt ccgtccgaat tccaatatct tatca                                  215
//
ID   Copia-166_AA-I repbase;    DNA;    INV; 4165 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-166_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4165
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4165
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1437-1437 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4165 BP; 1097 A; 862 C; 1281 G; 922 T; 3 other;
     ggttatgggc ccaggtggaa gttccgagga aaaagtgttt tttcggtcga tttttccggt        60
     gcaaagttgg tcgcgatttg gctcgttttc ggcgggtgct tccgcggtgc attagtgtgc       120
     gtgtgctttg ccggaccgaa aaactgtttc gttcgtgtgt gtcgggatgg aagcgctgag       180
     caaattctcc aaactgaaca accaaaactg gcagtcatgg aagttcagaa tggagatgct       240
     cttgattcgc gaagagcttt ggtatgtggt ggaagaacca aagccggagc ccgtgacgcc       300
     taagtggtca acggatgaca aaaaggcgag ggctaccatg gggctatgtg ttgaagacag       360
     tcaatatagc ctcgtgaagg gtgcgactaa cgcgaaagat ttttggaaag cgcttcgtga       420
     ttatcatgag aaggtgacgg tcacttctcg agtgagtctt ctacggaagt tgtgtaacct       480
     aaacctagtg gaaggtgggg acatggaggc tcatttgttc gaggttgagg agttgtttag       540
     tcggctggaa aatgccgatt tgaagctgga gcagccgatg aaaattgcga tgatgcttcg       600
     cagtttgccc gagtcatacg gtgggctcgt gacagcgtta gagagtcgct ctgaccaaga       660
     tttgacaacc gagctcgtca aatcaaaact cctcgacgaa cacgaaaggc gcagggagcg       720
     aggtggtggt ccctcgcatg agcgcgtaat gaaaagtgac gtgaagaact cgaatagtgt       780
     cgcggaaaaa gtgtgcttct tctgtaagaa gaaaggccac ttgcgtcgca actgtcggtt       840
     gctgcaggcg aagaaagagc caaaggaaaa cgagaagagc ccccacaagg cgaagcaagt       900
     cagtgcggag tgtacgagtg caatgttgtt tatggccggt gataatcata gttgtgattg       960
     ggtcattgat agtggtgcga ctgcacacat gagcaacgag cgaaaatggt tttgttcgct      1020
     cgacgaaacc gttactccgg atgtgtcgct ggctgatggc accacagtga aggctgcggg      1080
     acgcggaaaa gtgattgtgt ttggggttga tggctctggt ggcacagtgg aaattactct      1140
     tggtgaggta ctgtatgtac cgtcgctgag cagcagcttg gtgtctgtgc caaagctcac      1200
     cgcaagagga ttgaaagtgg tgtttgcgga gaacagttgt gacatttgtg acgattccga      1260
     aaaggtggtt gccaggggtg atcttcgcgg atgtgtgtat catctgaaag tgtccgaagt      1320
     agtgaggagt gcgaacagtg ctcggcacaa tgaattgtgt cagcaccaat ggcaccgaag      1380
     atttgggcac cgagacccca cggtagtgca gaaaatgtgt aatcttgctg atggtgtgaa      1440
     ggtgaaggac tgtggaatcc gcctcatgtg tgaggtatgt cttgagggta agttgcctcg      1500
     aacggccatt ccaaaaacgg ccgaaaggaa gtcaacacag gtcctagatc tggtgcacac      1560
     cgatctgtgt ggccckatgc gcaccaccac accgggagga aagcgtttcc tcatgacggt      1620
     aatcgacgat tacagccggt acaccgtcgt gtacttgctt agcaagaaat ctgaggcagc      1680
     cgatcgactc atggaatacg tcaggtatgt agaaaacttg tttggcagaa agccgcgtat      1740
     agtaagatca gatggtggtg gcgagtatgc caatgcgaga ctgcagaagt ttttcgctgc      1800
     tgagggaata aaggtgcaat ataccacggc atacacacct cagcagaacg gcgtcgccga      1860
     gcggcgcaac cgttatctgc aggaaatggc cacagcgatg cttctggatg cgaagctgga      1920
     ccataggttc tggggtgagg cagtccttac cgctgcttac ctgcagaaca ggctgccatc      1980
     gaaatcggtt gatgctactc catacgaaaa gtggcatggt aggaggccga aattggacca      2040
     cttgcgggtt tacggcwgcg aagcgtgggt tcatatccca gcggtgaaac gcggaaagtt      2100
     cgacggtaaa gctcagaagc tggtgttcat cggctattcg gaccaacaca aggcctatcg      2160
     attcgtcgat ctggcaacgt ggaaggtcac cataagccgt gatgcacggt ttctcgaaat      2220
     gaacgaagcg aaagatccat ctggcgaaaa gggaatcttg aatgaagagg atggtattcc      2280
     attcacaccg gcacggcaac tggagggaag agagcaaccg attgctgacc ctgtaccagg      2340
     tgaagagtgc gaagagtcta acgacgaaga attcgatgag tgcgaagagt acgtggagga      2400
     agagccagaa ttggcagaag atcccttggc aatcaaaaat gaaccgataa gtgacactga      2460
     ctatccgatg agtgacaatg acgatttgat gagtgacgaa gataatccag tgagtgagat      2520
     acgtggaaag cgaaagaatc gcggtaaaat gcccaaccgg tattccgatt ttgttgtggg      2580
     tgcagccacg caaatggtga aagagccggt gacctacaat gaagcagtaa actgtgcgga      2640
     acgtgactcc tggaagcagg cgatggatga cgaaatccgg tcgcatgagc gtaatggtac      2700
     ctgggaactt gcggatctgc cagcaggacg aaaggttgtg ggaagtcgct gggtgtttaa      2760
     ggtcaagcaa aatgaagcag gacaagtgac gcgtttcaag gctcgtgtgg tggctcaagg      2820
     tcacgttcag aagttcggcg tcgactatga cgagatcttc gctcccgtta ctcgttattc      2880
     gacattgagg acactgctgg tgatagctgg aagggatgag ctggttttga aacacctgga      2940
     tatcaagacc gcttatcttt atggcgagat taaagaggag gtctacatgc ggcagccacc      3000
     cggctacgca gtgcgcggcc aagagacgaa ggtatgccga ttgcgacgaa gcatttatgg      3060
     acttaagcag tccgcccgtt gctggaacaa gaagttatcc agtgtactga aggcaatggg      3120
     attcactgcg agtcccaccg atccctgctt gtacatcgct acccggaatg gacgaacagt      3180
     gtatctcctt gtatacgttg atgatttgct agttggatgc gcagttgagg aggagattac      3240
     acgggtgtac gaagagctga agaaccactt cgaggtgaac tggctgggtg atccgaaatt      3300
     ctttttggga ttggagattc gtagagatgc agatggagtg ttttgcttgg gtgtacagca      3360
     gtacattcgc aagttgatcc agagtctcgg acttgagaac gcgaagattg cacgaactcc      3420
     aatggacacg ggccatctga agctggagga gaaaggcgaa gcattctcgg acaacacgaa      3480
     gtaccgtagc gttgtgggag ctctaatgta catagcaact tgtgctcgac ccgatatcgc      3540
     aacgagtgct tccatattgg gaaggagctt cgaggctccg aaggagagtg actggatagc      3600
     agcaaaaagg gtcgtccggt acctaaaagg tacagctgat tggcgactga ggctaggagg      3660
     agacacagct tccatgctgg aggcattctc agatgcggac tgggccggtg accccaggac      3720
     gagaaaatcc atgaccggat atgtattgtt tttcggtggt ggagctgtga cttggacgag      3780
     ccgacgacag gattgcgtta gcctctcatc gatggaggcg gaatacgtcg cccttggcga      3840
     ggcgtgccaa gaggtgatgt ggacaaggcg actacttcaa gacttgggtg agaaacaaac      3900
     ggaccctacc ctgatcaatg aagacaacca agggtgtcta agtttcgtgc actcggagag      3960
     aacgactaga aggtcgaaac acatagaaac caaacagtgc ttcatccgtg acttagtcga      4020
     ccgtggtgtt gtgaacctga agtactgtcc cactgacgag atgaaggcgg acattctcac      4080
     gaagccgctt ggagcggtga agcataagcg ttttgctgaa caactcggac tsgcggctga      4140
     tcgagggcct tacgttgagg aggag                                            4165
//
ID   Copia-166_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-166_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1482-1482 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 241 BP; 53 A; 72 C; 41 G; 74 T; 1 other;
     tgttagccgg tacaacggtg cgcccctcta tcacacacct tgtgctgcaa satcgcgcac        60
     tactatatgg ttatcatacc ttgtccattc aacacacttt gatccttttt caatatagta       120
     aataaacgat tcgcaacgac gccgcgtgct tttacaatcg tctccgataa tcccgtattt       180
     tcccggtgtt tgttcctccg aacggcgtga ttccacttcg taacctgcct ctggtctcac       240
     a                                                                       241
//
ID   Copia-167_AA-I repbase;    DNA;    INV; 4096 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-167_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4096
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4096
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1438-1438 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4096 BP; 1106 A; 780 C; 1252 G; 955 T; 3 other;
     ggttattggc ccaggtaacg tttttggcga aagtagtttt cgggagtgat ctgcaaaatg        60
     ctggaagaaa gttcggaccg tgtgttgttg ccactctttg atggctctaa tttcgctgca       120
     tggaaatttc gcatgcaagt gcttctcgaa gagcgagagt tatccgagtg cgtgcagaat       180
     aatgtggcgg atgtggagga gctgaaagag gaaccggctg acacggaagc ggtgaaaacc       240
     cagaagaaga aagcgaggga ggatcggatg aaaatggacc gtcgctgcaa atcgctgttg       300
     atatcaagaa ttcacgattc gcagctggaa tacatccagg aaaagaagac gccgaaggac       360
     atttgggacg cactgcaccg ggtgtttgaa cgccggagca tcgccagcag gatgcacctt       420
     aagcgggaga tgttatcgat gcgattcgag ggcggaacac tgcagcagca ctttttaaag       480
     ttcgacaagt tggtgcggga gtatcgcgcg accggtgctc agctggagga tttggatgtg       540
     gtgtgccatc ttcttcttac tcttggatcc tcgtatgcag gagtagtgac tgcgctagaa       600
     actatgcccg aagaaaattt gtcgatcgaa ttcgtcaagt gcagactctt ggacgaggag       660
     acaaagagga aaggtggtga atcgtcatcc gcatcgaaca gtgacgctgc gtttttcgga       720
     ggaaggaaga agaagctgct gaaatgtttc ggctgtcaca aggatggaca caagctagtg       780
     gactgccccg agaaaaagaa gaagcaatcc aaccagaagc gaccaaattc gaaggcaaac       840
     gttgcggatt caagcgagcg aggaggcgta tgtttcgtcg gtgtaagcga cgggattgct       900
     gcgaacgaaa caaaccggac gaggtggttt atcgactccg gggcaacaga tcatctggtg       960
     cgtgaccgga atttgttcag cgaactgcgt cgcttggaga agcctatcga aatagcagtg      1020
     gcgaaggatg gcgagacgat tgtcgcggag cactctggta cgatacaggt agtatccatc      1080
     gtaaatggta agtccattga ttgtactatt aaggatgcac tgtatgtgcc gagtttgcgc      1140
     tgtaacctgt tctcagtgct gaaggtagag caggcaggta tgcgcgtcgt gtttgagtgc      1200
     gggaaagcaa agatctatcg tggatccgaa atcgtcgcgt gtggtgcatt gcgtaacaaa      1260
     ctttacgaac ttgactttta ttcggaaaag aacagtgcgg ataaatcgtc gttattgacg      1320
     tgcggtcgaa tccaaaagaa tatggaactt tggcatcggc gatatggcca tctgaatgag      1380
     aagagcctga agtgcttgat gagaaacgaa atggtttcgg gactatcagt gaacgccggt      1440
     ggggacaaaa gtgtgatctc gtgtgaatcg tgtctcgtcg gtaagcaaac gagaaaaccg      1500
     ttttcgtcgc gtgatggtaa gcgtacatcg cgagtactcg aactagtaca caccgatgtg      1560
     tgcggccctg tgacgccgga agggctattc gggaagaaat acttcgttac gtttacggac      1620
     gattggagcc attttgctat ggtttatttg atttcgtcca aggacgaggt aatacagtgt      1680
     ttcaaggaat atgaggccct tgttacggcg aagtttgatc ggaggatttc gcgcctaagg      1740
     tgcgacaatg gaggcgagta cgcgagcaag cgcttcaaga aattttgcaa atctcgaggg      1800
     attcaagttg agtggactgt gccgtatacc cccgagcaaa acggggtcag tgagcgtcta      1860
     aatcggacgc tcgtcgaaaa ggctagatct atgttggcgg attccggtat tggtaaggag      1920
     ttctgggggc aggctgttga gaccgccgct tacctgacga acaggagtcc gactactgct      1980
     atcgagtcaa atcaaacgcc gtatgaattg tgggagtcgc gaaagccgaa tgtatcaaat      2040
     attcgagtct tcggaagcag agttttcgtt catgtgccgc aggagctgag aagaaagcta      2100
     gatgccaaag cttggaacgg tatttttctg gggtattcgc acaatgggta tcgtgttttc      2160
     gatccggtta agaggaagat cgtcacagca cgagatgtgg atttcatcga aactgatagt      2220
     gtgatgaaga agtcagcgga tcagttcgtg aaagtgccta gagttcacgc ggaggttgaa      2280
     aaggacgaaa attatgccga accggctgag aatccatcgg atgatgaaag tgktggtcca      2340
     gaaggagatg ttgtatcgga aaaagtggat gaagtttcgg aatctgatga atacggaagt      2400
     ctggaagagg atgaagaagc ggaaatttcg gacgaagcgg tagaaggaag acccaaacgg      2460
     aagaagaaga cgccggtttg gcaccgggat ttcgacatgg agtacgctgg attcgccctc      2520
     agtgcgatga attttgtgga gaacattcca ggttcgatcg gcgaattgaa gaagcgagac      2580
     gattggaaga tgtgggaagc tgcgatcgat gacgagatga aatctttgat gcggaataac      2640
     acgtggtcta tggtgaagct tccagagggg cgatcggccg tcacctgcaa atgggtgttc      2700
     aaagtgaagg aaggtggtcc aggcaaggct gataagtaca aggcgcggct cgttgcgagg      2760
     ggttttaccc agaaacaagg cttcgactac acggaaactt attctccggt ggcgaagctc      2820
     gacaccttgc gagcggttct ggcattggcc aaccgagagc ggttgttggt ccatcaaatg      2880
     gacgtcaaaa ccgcgttttt gaatggcgag ctaatggaag aagtgtacat gacccagccg      2940
     gaaggttttg accaaggaaa cggattagtg tgccggctga atcgatcgat atatggactg      3000
     aagcaggctt cgcgtacctg gaacgagagg tttaacggtt tcgtggagaa acttgggttt      3060
     gttcggagcg aaaacgatcc gtgcctatac acgcgtggtg taggcaaaca gatggtgatt      3120
     ttagtgctgt atgtcgacga tattttgttg gttggatcat cgttgaagat tctgaaggct      3180
     gtgaagagga agcttgccgc agaatttgag atgaccgatg atggcgaagt mcgacagttt      3240
     ttagggatga acatcgaccg tgatattgag gcaggtgtgc tgaagataag tcagcgtgga      3300
     tatttcgaaa ggctgttgga acgattcggg atgacggagt gcaaggcggt ttcgacgccg      3360
     atagaaaatc gtctgcgatt gaagaaggga gaggaacacc aaaggacgtc gaaaccatat      3420
     cgcgaattag ttggctgtct gatgtatgcg tccctgacga cmagaccgga cttgtcagcg      3480
     gcaaccaact actttagcca atttcaatca tgcccgaccg atgaacactg ggttcattta      3540
     aaacgagcgc tgcggtacat caaaggaaca ctagatgtag gtttggtata caggctgagc      3600
     gaagatgcac cactgttcga gatattttgc gatgcagatt gggcgaatga tttggtagat      3660
     cgaagatcag tgactggagg tatcttcaag atgcatggtt gtacgatcag ctggattacc      3720
     aggaagcagc aaacagttgc actctcttct acggaagcgg aactttctgc gttgtgtaca      3780
     actgtatgtc acgcaatgtg gatggttcga gtgctgcagg atttaggaag gtgtttggag      3840
     ggaccgattc cggtctatga agacaatcag tcaacgatca ggattgctga ggatgaacga      3900
     gattgcaaga gactgaagca cgtagataca aagtttcact tcctgcgtga tttggtacag      3960
     caaggtaaga tccacatcga gttcgtgcgc tcatccgagc aacaggctga tttgatgacc      4020
     aaaggcctcc cggcggcctc cttcaagggg ttgcgctcca agataggatt ggagacatgc      4080
     tgtggttgag cagggg                                                      4096
//
ID   Copia-167_AA-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-167_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-199
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-199
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1483-1483 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 199 BP; 49 A; 48 C; 36 G; 66 T; 0 other;
     tgttgggttg gcaaccactg cgcttgttgc gcccctatcc cttgactacg gcactgtgct        60
     gatcgaagtg gccgattggc aaccatcttt atttttcatt ccaaatgtaa acatcaaact       120
     gaatacacgc gtttctaaac atttcattaa taattaaaac gtgttgtgtt attcttcctg       180
     gctgatccga aacctttca                                                    199
//
ID   Copia-168_AA-I repbase;    DNA;    INV; 4100 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-168_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4100
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4100
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1439-1439 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4100 BP; 1111 A; 769 C; 1220 G; 1000 T; 0 other;
     ggttatgtgc tcagtttacc gcgtgtgaaa atttttcgat tcggaaccgc aaaaagaaat        60
     cggtcggtag tgcgcgatgg aggacgaggc aaaaatcctc cggttcaggc cctttgacgg       120
     aacggggttc aataattgga gcttccggat gcgagtatat ctccagcagc tggaggtgct       180
     gcattgtgtt gaaaaggcag ctgaagaaga agatttttgg gagagtccca ccagtgcgtc       240
     ggctgaggtt agggcggagg ccgaagtgaa aaaggctgcg cggataaagc aggataataa       300
     gtgtcgatct gtgttgattc aagcagtggc ggacagccat cttgaatatg tgaaagacaa       360
     agtgagtccc aaagagattt gggatggact gcatgacgtg tttgagcgaa aaagcattac       420
     gaatcgtttt ttgctaaaac gtcagttgtt gtcgatgcga ttcagtgagg gtgaaaagct       480
     gcaggagcac tttttgcgct ttgaccagct tgtgcgtgaa atcaagggcg ctggtgcgaa       540
     aatggaagaa gaagacgtta tctgccatct catgttgacg atgccgcaat cgtacgacgc       600
     cgttaccact gctatggaag cggtgtcaga gaggcttact atggatttag tgcgacgtaa       660
     gtatttggat gtggaagcta agcgcaaggg tcagcggctg gaagcggaaa cagaagaggc       720
     tgcgttcgcg ggaaaatcca aaggcaagtg gaagtgtttt ggttgtggcg aatttggcca       780
     taagaaagct cagtgtccga gattcggaga aaacaagagc ggtggctcga gtggtggtgg       840
     tcagcaaaag cacggaaaga aaactgcagt gcagaaggca aatcttggtg ccaaaacggt       900
     ttcgttcgtg gctgccatgg aaacagctat tactggcagt gtagttgagg cgaaatggtt       960
     tttagacagt ggtgcctccg aacatatggc aaatgataag tcgctgttcg aaaatttgga      1020
     gagattgaat cagccggtga tcattcaaac ggcgaaaagt ggtgtcaatt tgctcgcgca      1080
     tttcaagggt cgtgttgttg ctagtgctct ggtgggcgat gagaagatcc gggtaaatat      1140
     ggaagatgtt ctgtttattc cggagctatc gttaaatctc ctgtcgctgc ggcggttgga      1200
     aaataccggc aaacgtgtaa catttttcaa tggctctgtg accgttgaag atggtgatga      1260
     tgtagtggcc accggcaggc agctgggtcg gctgtactgc atgaatctag tttgtgtgaa      1320
     gcgaggagga aacggaaaag cactagtgac gggaaaagtg agtaagaaga tggagctgtg      1380
     gcatcatcgg ttcggccatc ttggaaatga taatttgatg aagcttgtga agaaaaatat      1440
     ggtagatgga atgtcgttgg acagcacttg tgaaaaatcg gacgagattt tgtgtgaacc      1500
     gtgtatcagt ggaaagcaaa cgcgagaacc gttccactct cgaacggaaa agcgtgctac      1560
     tcgcccgctg gaaatcgtcc atagtgacgt ttgtggcccg gtgaccccag tatcgtggga      1620
     cgggagtgag tattttgtaa cgttcacgga cgatttcaca cacgtgtcag tagtgttctt      1680
     gctgaagtcc aaggacgaag tgcttgatcg attagtggaa tacgaggcga tggccacatc      1740
     gcattttggc acgaaaatcg cacgtcttcg atgcgataac ggtggtgaat acaccggcgg      1800
     tgcagtgaag cgattttgca agcgaaaagg tattcgtttg gagtacacag tgccgtatac      1860
     tcccgaacag aacggagtga gtgagagact aaatcgtacg atcgttgaaa aagtgcgcgc      1920
     gatgttggaa acaagtggtt tgccgaagaa tatgtggggt gaagcggtat ataccgcagt      1980
     ttaccttctg aatcggagcc caagtgttgc ggtcgatggt gacatcacgc cgtacgaagc      2040
     gtggaacggt cgaaaaccag atgtctcaaa actgcgtgtc ttcgggagtg aatgtttcgt      2100
     gcacgtgccg aaaccattgc gtaagaaact tgacgctaaa agtcaaaagg ttgttttcgt      2160
     cggatatgcg ccgaatggct accgttgctg gaacgggaag aaagtgtttg tatcacgtga      2220
     cgttattttt aatgagtgtg agttcggcgg attgcgaaaa gtggagaatg tggatgatac      2280
     cgatatggtg gtgatcaaag atcgaccatc aaagccctgt gcaccggctg ataggccagg      2340
     tgatcttgag gagaacggta gtgagccaga tggtgcagtg gctgaagcat cggattccga      2400
     tgaaatgcat tccctttcgg aagatgaaga agaaccagga ctgattagtg gcgctagaag      2460
     aagccatcgg gtaataaacc cgccggcttg gcataacgac tatgaagtgg acattacagc      2520
     gtttgcactc agtgcggaag agtttgtcga ggacataccg tctagcgtag aagagttgaa      2580
     gaagcgtaac gattggccag tgtgggaaaa ggccattgaa gaagaactgc agtcgttgga      2640
     gaaaaacgga acgtggagcc tggtggagtt acccaaagga agaagattgg ttgacaacaa      2700
     atgggtattt aaaattaaaa gaaacagtga tggttcgatt gatcggtaca aggcaaggct      2760
     tgttgcccgt ggtttttctc agcgacacgg attcgattac tcggatacgt actctccggt      2820
     tgtgaaaatg tctacgttgc gtgttctctt gtcacttgcc aatcaagagt gttggctggt      2880
     acaccagatg gacgttaagt gtgcgtttct taacggtgtg ttggacgagg aagtgttcat      2940
     gcgccaaccg tctggctttg agcggggagg atcactagtg tgtaaactaa acaaagccat      3000
     atacggtctc aagcaagcct cgcgaaagtg gaacgaacgt tttcatgagt ttatgagccg      3060
     tatgcagttt agaagaagtg aacaggacta ttgcttgtac ttttggtctg tgaatggcat      3120
     agtgttgtac gtagtgatat acgtcgatga cattcttatc atcgggaatt ccgagaaggc      3180
     tatttgtgag ctaaagcgga agctatcgtc tgagtttgat atgcgggacc tacaggaagt      3240
     ccgaagcttc cttggtctaa acattcaacg tgatcggaag aaaggtgtga tggtcatcga      3300
     acagaaggcg tatgtgaaaa gtgttcttga gcggttcggg atgataaatt gcaaaccatc      3360
     tatgattccg atggagccgc acttgaagct cgagaagggg aaagacgcca agcagttcac      3420
     cgacaagcca tatagggaac tgattggttg cctcatgtac ctgatggtga cgtctagacc      3480
     agacatctgc gcggcggtga actattttgc cgggttccaa tgctgcgcga ctgatgaaca      3540
     ctgggtgcac ctgaagcggg tgctacgata cctaaggggt actatggatt accaactcgt      3600
     ttatcgccgg caagattcgc cagaaggact tctggcattt gcggatgcgg attggggtaa      3660
     cgaccccaat gaccggcgtt ctgtgtcggg attcatcatc aagctttttg gatcaactat      3720
     tgcatgggca acgaaaaagc aatcttcggt agctctctct actaccgagg cggaattgat      3780
     ggcactttgt ttagcaagct gcgagctgat ctgggtatct aacctgcttc ggtcgattgg      3840
     ttgtgaaatt gaagagccgt tgacggtcta cgaggacaac cagccgtgta ttgcgttgac      3900
     tacagaacct cgaaaacaaa agcggatgaa acacgtggaa atccaacatt tcttcgtaag      3960
     ggaactcatc gaaaagggta agttgcgtct tgagtacgtg ccaaccgagc accaactggc      4020
     tgacgtgatg accaaaggat tggcttcacc aagattccgc acacttcgag atcaactggg      4080
     attattaaat tgagggggga                                                  4100
//
ID   Copia-168_AA-LTR repbase;    DNA;    INV; 156 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-168_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-156
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-156
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1484-1484 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 156 BP; 52 A; 30 C; 26 G; 48 T; 0 other;
     tgttaagagt gtatttgggt tcattccaat taataattac ccagtacgaa ataacagtgt        60
     ataacgaaac gtcagaataa atctttctct tttgtatcga acgtacatcg aaccagacgt       120
     gttctgaatt cgctctccga aacgcctgaa ttaaaa                                 156
//
ID   Copia-169_AA-I repbase;    DNA;    INV; 4267 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-169_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1440-1440 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4267 BP; 1124 A; 908 C; 1261 G; 974 T; 0 other;
     ggttatgggc ccagtggagg ttttaaggaa aagttatttt tcgctctaaa cgaggaaaaa        60
     gttttttggc tgaaagttcg gcgttcggaa cgggaagggc gtcatcgcca tcgtcgtcgt       120
     cggtcgcggc atagtgtgtg tgagagccgg cgccgtgtgt acaccgacag tgcaaaagtt       180
     gttttcattt cgttgattag tcgtcggttg tgtgttggac gagtgacgga aaatggattc       240
     aatcagcaag ttcgcgaagc tgaataatca gaactggcta tcctggaaat tcaggatgga       300
     gatgctcctg accagggagg agctcttcta cacgatcgat gcgcccaagc cggagcctgt       360
     caccgatcaa tggagcaagg atgacaaaaa ggctcgagcg acgatggggt tatgtattga       420
     agataaccaa tacagcctca taaaaacagc tcagtccgct ctcgagttct ggaataattt       480
     acagaagtat cacgaaaaag tcaccgtgac ttctagagtg tcccttctca aaaagttatg       540
     cagcttgaac ttgcgagaag gtggtgattt ggaggcgcat ctcttcgaag tgaacgatct       600
     tttcgatcga ttggctaacg ccggccagga cttggagaat cagctgaaaa ttgccatgat       660
     cctgaggagt ttgcccgact cctatagcgg gctggtcaca gcgctggaaa gtagaccaga       720
     tgaggacttg acagtcgagc tggtccgatc gaaactcttg gacgagtacg agcgtcggaa       780
     ggagcgatcc ggtcatggtt catccggcga agcgaaggcg atgaagagcg gcatgaagtc       840
     gcacagtgtt gtgaaggaga agtccgaaat tgagtgcttc ttttgtaaga agaagggcca       900
     catgaagcga gactgcttgc ggtttcaggc cttgaagagc aaaagtgaca atcgagaaga       960
     agaacaaaag aagaaaagtg atcgcccaaa ggctaaacaa gtcaaggaga aaagctctag      1020
     tgcggtgttg ttcatggccg gcgggaagag gcaatgttgc tgggttgtgg acagcggtgc      1080
     tagcagccac atgagcaatg accgaagtgt gtttacctcg ctcagtgaag agagcgcccc      1140
     agaagtggtt cttgcggacg gatccatagt tcaatcggtc ggatgtggta catgtgtgct      1200
     gactggggtt gacggctgtg gaaatgcagt ggacattact ctcacggaag tactttttgt      1260
     gccatcgttg aacagtaatt tgctttcggt tgcaaagctg gctgctaagg gcttcgttgt      1320
     gtttttcgga caagactgtt gtgacatttg cgatcgatcc ggaaatgtta aagtgaaggg      1380
     tgccagatcg gatagtctat accatctgaa aacggtggag acagtgatga aagttgacag      1440
     taagcagcac aacgaatttt gtcaacacca gtggcatcgc cgcttcggcc accgcgatcc      1500
     ttcgagtatt gatagaatga ataaggagaa gttagtggat ggcttgaaac tgaaagattg      1560
     tggaatccgg ttgacctgcg aatcgtgttt ggaggggaag ctgtcgcgaa cgtcgatccc      1620
     gaagacggct gaaagagcgt ccacgcaagt tttggatttg gtgcacacag acctatgtgg      1680
     gcctatgcgc actgcaacac ccagcggcaa ccgattcctg atgaccatca ttgatgattt      1740
     cagcaggtat gcggtcgtgt atcttctcgc ccggaagtcg gatgcagccg acaagctcat      1800
     cgagtatgtc aggtacgtgc aaaatttatt tggtagaaag ccgcgagtgg ttcgctctga      1860
     cggaggcggc gagtatgata acaagaagct tcaaagcttc ttcgccgagg aggggatcaa      1920
     ggtacagttt accaccccct acaccccaca acaaaatggg gtggcagaga ggcggaatag      1980
     gtacctgcag gagatggcaa ccacaatgct gctcgatgcg aagcttgata caaaatattg      2040
     gggcgaagcg gtgctagccg ctacttatct gcagaacaga ttgccctcgc gctcggtgga      2100
     tacgactcct tttgaaaagt ggttcgagaa gaaaccagat gttcggcact tgagggtata      2160
     cgggtcgcaa gcgtgggttc acatcccaga tgtgaagcgc ggcaaatttg aaagtaaagc      2220
     tcgcaaacta acgttcatag gctactcaga acaacataag gggtatcgtt ttgtagattt      2280
     ggcaaccgag aacgtcatta ttagccgtga cgccaaattt ttggaatttg atgctgttcc      2340
     tcgggatgaa gaggaaacgg atccaattac cgatggtgtc gaatggcttg ccacgcagga      2400
     cggtgagcgg gatcggtcgg tagtcgaacc ggtgttgggg tcgacagatg taagcgatgc      2460
     tgaggatgag gatggggcat tcgacagccc cgatagccaa ccaagcgatg atgatgctag      2520
     tgagtgtgag caatttttcg atttgagctc cagttccgct ctgaatgatc ctctgaacat      2580
     caaacaggat tccgaggaaa acccccagag tgacaagagt agtcgagctt cccgtaaaac      2640
     ccgtaacaag ttgcctgata aatacagcga tttcgtcgta ggatttgcca ctcatgcgtt      2700
     ggcggaacca gagtcgtata tcgaagcaat gaagtgtcca gagcgaaaat cttggaaaga      2760
     ggctatggat gaagaaatgt cttcgcacaa ggaaaacggt acctgggagt tggtacccct      2820
     accacccggg aaaaaggtca tcggaagtcg ctgggtgtac aaagcgaaga tggacgaatc      2880
     cggacaagtc gtgcggctta aggctcgagt cgtggcacaa gggcatacgc agcgttttgg      2940
     agtggacttc aacgaagttt ttgcgccggt aatccgccac actacgttga ggaccttgct      3000
     tgctctagct ggcagagacg ggatgaacct tatgcatttg gatgttcgaa cggcatattt      3060
     gtatggcgat attagcgaag aggtgtacat gcggcagcct gctgggtacg tcgttcgcgg      3120
     acaggaggag atggtgtgcc gtttacgccg gagcatttac ggcctccatc agtcggctag      3180
     gtgttggcac aagaagttat ccgaagttct gaagggaata ggttttgctc caagttctgc      3240
     cgacccgtgc ttgtatattg ctatgagaag cgaaagtgtt gtctacctga tcgtctacgt      3300
     tgacgatatg ttagtcgctt gtgctgataa gaaggagtta acacgagtcc acgatcaact      3360
     gaagaagcat ttcgacgtta actgtctcgg caacgcgaag cattttctgg gcttggaggt      3420
     aaccaaggac tcgcaaggag tgtacaactt gagcttgcaa tcgtacatca agagattgat      3480
     cgtggcattt ggtatgaagg aagctaaagt ggcccggaca ccgatggacc aagggtacct      3540
     caaagacacg accaatagcg aagcaatgaa ggatatcact atgtaccgca gtctcgttgg      3600
     tgccctgatg tacgtcgcgg tctgcgtaag gcccgacatc gccgccggtg ttggcatttt      3660
     gggccgcaag ttcagccaac catctgagag agattggaca gcagcgaagc gtgtactccg      3720
     ctatttgaag ggtacagtcg attggaaatt aaggctcggt ggatcaagcg aagctgaatt      3780
     cgaagcctac tcggattccg actgggctgg ggatccaagt acccgaaagt cgaccactgg      3840
     ttttgttgtc ttcttcgcag gaggagctgt ctcctgggcg agccggcggc aggactgcgt      3900
     gagcctctcg tccatggagg cagaatatgt ggcattagga gagacgtgcc aggaggtgct      3960
     atggatgagg cgtttgcttg aggacttagg cgaaaagcag aagaaggcta ctgttgtaca      4020
     cgaagacaac caaggttgtc tagccttcgt acaatctgac aagaccagca agagatccaa      4080
     acacatcaat acgaaagaat gcttcatccg tgacctgtgc gagcgagggg cagtcaagct      4140
     tgagtactgc ccgagcgatg cgatgcgtgc agacattttc accaaaccct tggggactgt      4200
     gaagcaccat ggcttcgcga aactgattgg ccttcaaggc atccgagggg aaaccgctga      4260
     ggaggag                                                                4267
//
ID   Copia-169_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-169_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-235
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-235
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1485-1485 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 235 BP; 58 A; 59 C; 41 G; 77 T; 0 other;
     tgttagaagt tacagcggtg cacccctcgt caatctaaat accttggttg tgtacctgaa        60
     tttgtagtga ccttgcacac catcatttct tttgtttgat catcaataat aataaaaacg       120
     tttaacttgc aaccgcgcgt gtttttcaat tgcgagaagt tttacgtgtc cgttccgggt       180
     ttattccttc taaccaacgc gaatccactg tcgaacctgt ccaccttgac ccaca            235
//
ID   Copia-16_AA-I repbase;    DNA;    INV; 4159 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_AA_;
KW   Copia-16_AA-LTR; Copia-16_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4159
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 943-943 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1431-1961] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           978..2660
FT                 /product="Copia-16_AA-I_1p"
FT                 /translation="MAADKGVMEIAATGTVKLFPKCCPENPPIDVNNVKLI
FT                 PTISSNLLSVSQIVRRGHEVRFCDNGVKVIDSDGDVIATGTHDVSNGQFRF
FT                 DESDEQKALSLAASPVNLDVWHRRMGHLNVRSLKLLKNGLATGVEFQETAI
FT                 DNCSVCAMGKQTRLPFPSSGHRASGVLELVHTDICGPMEETSLGGSRYYVS
FT                 FADDWTRRIFVYFLETKSEAEVLNAFDQFRALAEKQTGAKLKAIRSDNGKE
FT                 YCNKSFQKRLAEAGIIHQKSTEYTPEQNGLAERVNRTVVERARCMLYEAKL
FT                 PKSFWAEAVAAATYVINRSPTKGHDLTPEEAWTGRKPDLSHVRVFGAKTMV
FT                 HIPKQKRKKWDAKSTECILVGFDELTKAYRLYDPVKKDVIRSRDVVFLNEL
FT                 PQAEVKAKPATTKSKPTRVRTFVNLDFDDSPIEPIPRDEPARPTREEESSD
FT                 EGASGSDEDFYSQAETSGGEYSEGAEGDVTITALPPRQSSNPPESQVLRRS
FT                 GRERAIPGKYNDFVFPRKGFPFSPSTEQPDQAGQSNRQQGLKASKRPASKS
FT                 GDPQTRRRRCETTT"
XX
SQ   Sequence 4159 BP; 1062 A; 1053 C; 1211 G; 825 T; 8 other;
     ataggttatt ggcccaagta ttttttcaaa agaagattct cgaagcagaa aatgtctctc        60
     ggcggagctg gcgacaacca agcggaacgg attccgcaaa tccagcagca gtttcaaaac       120
     cactcaagcc ttccccccat cgagcggttg tgcggtcgtg aaaactggcc cacgtggaag       180
     tttgcggtgg aaacttatct cgagctggag gagctgtggg aaacagtgaa gccgattccc       240
     aacgcggatg gaacgctgcc ggcgatcgac gagaggaagt gtagaagagc acgtgcgaaa       300
     attattctcc ttctggatcc cgtcaactac gtgcacgtga aggacgcgaa aacggcccgt       360
     gaggtttggg cgaagcttga agcagcattt gaggacaccg gcctgacscg gcgggtggcs       420
     ctgctcagga agctcatcac aacgatcgct ttcgtcgtgc ggttaccgtk gamacgtacg       480
     taacggagat cgtttccacc gctcatcacc tccgcggcgt ggggttcgaa atttccgaag       540
     agtggatcgg atcacttttg cttgctggtc ttccggagga gtacaagccg atgatcatgg       600
     cgctggaaag ctctggcatc cccatcaccg gcgacagcat caagacgaag ctgctccagg       660
     aagtgcaaat cccatcggac aaaacggcgt tcgttggaag aaaatcgtct cctccgaaaa       720
     cgaagcaaag cgtacccgaa aaccggtcag ctgcgcagcc caaaggtccg aagtgcaagc       780
     gctgccgtag gtacgggcac attgctaggg aatgccaggt gaaaagcgag gcgaggaagg       840
     gatcagcgtt cagcacggtg ctaacagcaa atagttgcca tagcgacgac gattgggtgt       900
     tcgattctgg cgcatcggac cacttcacca tsaacagccg cctactggtg aatgcgcgac       960
     cggctagtgg cgtggtcatg gcagccgata aaggtgtgat ggaaatcgct gcgaccggga      1020
     ccgtcaaact ttttccaaag tgttgcccgg agaatccacc gatagatgtg aacaacgtca      1080
     agctcattcc aacgatttcc agtaatctcc tctcggtgag tcaaatcgtg cgacgaggtc      1140
     acgaggtgcg gttttgcgat aatggcgtga aggtgatcga ttcggatggt gacgtcattg      1200
     caaccggtac ccacgatgtg tcgaatggac aattccgttt cgacgagtct gatgaacaga      1260
     aggctctatc actcgcagct tcgccagtca acttggacgt ctggcatagg agaatgggtc      1320
     acctcaacgt acgcagcctg aagcttctca agaacggcct tgctaccggg gtcgaatttc      1380
     aggaaacagc gatcgacaac tgttcggtat gcgccatggg taagcaaact cgtctcccat      1440
     tcccaagcag tggtcatcgt gcatccggcg tgttggagct tgtccatacg gacatttgcg      1500
     gaccaatgga ggaaacctcg ttaggtggaa gccggtacta cgtgtcgttt gcggacgatt      1560
     ggacgcggcg catattcgtc tacttcctgg agacgaaatc cgaagccgag gtgctgaacg      1620
     cattcgatca gtttcgcgct ctagcggaga agcaaactgg cgccaaattg aaagccatca      1680
     ggagcgacaa cggtaaggag tactgtaata agtcgtttca gaaacgcctt gccgaagccg      1740
     gcatcatcca ccaaaagtcc accgaataca caccggagca aaacgggttg gccgagcgtg      1800
     tcaatcgaac cgttgtcgag cgtgcaagat gcatgctcta cgaggcgaaa ctaccgaagt      1860
     ctttctgggc ggaagcggta gcagctgcaa cgtacgtgat caatcggtcc cccaccaaag      1920
     gtcacgattt aacaccagag gaggcatgga ccggtcggaa gcccgatctt tcccacgtgc      1980
     gagtttttgg tgcgaagacg atggtccaca ttcccaagca aaagcggaag aagtgggatg      2040
     cgaaatcgac ggagtgcatc ctggtcggtt ttgacgagct gaccaaagcc taccggctat      2100
     atgacccggt gaagaaggac gtaatcagga gccgtgacgt agttttcctg aacgagctgc      2160
     ctcaagccga ggtgaaggct aaaccagcta ctacaaagag caagccaacg cgagtgcgga      2220
     cgttcgtcaa tttggacttc gatgacagtc cgattgaacc gattccgcga gatgaaccag      2280
     cccggcctac acgtgaagaa gaatcatccg atgaaggtgc gtctggatcc gacgaagatt      2340
     tttattcgca agctgaaacc agcggcggcg aatactcaga aggtgctgag ggtgacgtga      2400
     caattacggc gctcccaccg cgacaatctt caaatccacc ggagtcacag gtgttgaggc      2460
     gcagcggtcg ggagcgcgca attccaggca agtacaatga ttttgtattt ccgagaaaag      2520
     gctttccgtt ttccccttct acagagcagc ccgaccaagc cggtcagagc aatcggcaac      2580
     aaggattgaa ggcgagcaaa cgtccggcga gcaagtcggg cgatccccaa acgcgacgga      2640
     ggcgttgcga aacgacgacg cstcgcaatg gcaatccgcc atggacgaag agtttcgagc      2700
     gctgatcgac aacgacacgt gggagttggt acagcttcca gccgacgaga aggccatcgg      2760
     ctgcaaatgg ctcttcaaaa ctaagcagga cgagaagggc aacgtgatcc gtcacaaagc      2820
     gagaatcgtc gctcaagggt tttcgcagcg gtacgggtcc gactacgacg aggtcttcgc      2880
     gccggtggca aagcaaacga cattccggac gttgttgact gtcgccagcc ggagaggttc      2940
     catcgtaagg cacgtcgacg taaaaacggc gtacttgaac ggtgtgctcg aagaaaccgt      3000
     ctacatgcgt caaccagagg ggtaccatgt cggcgacgaa aggacggtct gccgattgag      3060
     gaggagtctg tacggcctga agcagtcagc gcgcgtatgg aatcgcaaag tggatgcggt      3120
     tttcaaatcc atggggttca agccgaccga atcggatcct tgtttgtacg tgcgacgtat      3180
     gaatggttcg gtcgcgtata ttctgatata cgtggatgac atggtcgtcg tacgcaaacg      3240
     acgaaggagt tccaatccat tctgaagccg cttcaggaac atttttccgt ggctgacctt      3300
     ggagacgtca gccatttcct tggcatgcaa gtcgagagaa gcgagcaggg tacaatgctc      3360
     aaccagsaaa tgtacatccg caagctggcc gagcggttcg gcatgcagca agccaagccg      3420
     cgaagatacc actcgatccg agctacctac agcagaagga ggagatggat cagctgccga      3480
     acaaccacga ctacatgagc ttgattggag gtctcctgta tgtagctgtg cacacgcggc      3540
     cagacgtatc cgtgagcgtg tcgattctgg cgcaaaaatc cagctgcccg aattcgcaag      3600
     attgggcaga agcgaagcga attcttcggt atttgtaacc accagcaacc taagctgcag      3660
     cttggtgctt ccagcgctgg gttggaaatg ttcgccgatg cagactgggc cggcgacgct      3720
     cgcgaccgga aatcgaattc cggcatgatt ttgatgttcg gggaggacca atctcgtggt      3780
     gctcacgaaa gcaaacgtgc gttgctttga gttcgaccga agcggagttc gtggcgctcg      3840
     ctgaagggtg tcaggagcta tatggaccaa gcgactgctg aaggagatca gtgaagcaac      3900
     cgacgttccc atccccgttt tcgaggacaa ccaaagttgc atcaagctgg tggaaagcga      3960
     tcgcttcgaa cggcgcagca agcacatcga tacmaagttc ttctttgtcc gagacctgca      4020
     agagaaggaa agatcagatt gcagtactgt ccgacggaat cgatgctggc cgacttgatg      4080
     acgaaaccac tccaacgggt tcgtctggag agattacgag tagctgttgg gaatccgtcc      4140
     ggatctgccc gaggaggag                                                   4159
//
ID   Copia-16_AA-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_AA_;
KW   Copia-16_AA-I; Copia-16_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-136
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 944-944 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 136 BP; 44 A; 26 C; 21 G; 45 T; 0 other;
     tgttggaaga taaaataaac atagtaggcg ttcagaccga acgtcaatca tagtatgcct        60
     agatttaaat ttaaataaaa ttattctctt ctgtttctac cactgccaag agtagttcgt       120
     tttactgcct actcca                                                       136
//
ID   Copia-16_CQ-I repbase;    DNA;    INV; 4357 BP.
XX
AC   AAWU01015501;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_CQ_;
KW   Copia-16_CQ-LTR; Copia-16_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4357
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 347-347 (2011).
XX
DR   GenBank; AAWU01015501; Positions   16395   12039.
XX
CC   Positions [1737-2276] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           381..2555
FT                 /product="Copia-16_CQ-I_2p"
FT                 /translation="MLSLLEEREFLECIEANVADVPALKDEEGDDAAKQLE
FT                 KARLRERRTKRDRSCKNLIISRINDDQLEHVQDKTTPKDIWDALKHIFQRK
FT                 SLARRMYLKKEILTLALGNTSLQQHFLTFDKLVRQYRATGADMDELDAICH
FT                 LLLTLNASPKYAAVVTSLDTQPEEQLSLEFVKCRLLDEETKQKSVQIVIPK
FT                 KEETAFVGAKAQQQKPKQKKKLRCYNCKEEGHKMSDCPQKKKKEVKASANM
FT                 AEEQSAVCFAGLSRGESVPEQPVTWYIDSGCSDHLANDKSLFVELEPLKCP
FT                 VEIAIAKNDECIVAKHSGKVKVISKVNDKDILCTIENVLFVPELRCNLFSV
FT                 MRVDDAGMRVTYAEGEVAIYRGSELVASGKRDGKLYRLNFVRARVGENKSM
FT                 LTCGLVPKNVQLWHRRFGHLNAKSLDQLIRRDMVSGLKLNGGQNGKELVTC
FT                 EACVLGKQTRKPFVVREGKRSSRVLELIHSDVCGPISPDGLDGAKYFVTFI
FT                 DDWSHFVVVYLVEAKSEVFRYFKMYEAMATAKFGKKVCRLRCDNGGEYRSN
FT                 EFEQFCQEKGIQVEWTAPYTPEMNGTSERFNRTLVEKSRAMLEDSRVDKKF
FT                 WGQAIQTAAYLTNRSPSSALPPDVTPYEQWEGKKPDVSKLRAFGCPVYAHV
FT                 PKELRKKLDPKAWKGIFLGYTRGGYRIYNPELQRIVHTRDVDFLELEKPEH
FT                 KAKWNDADVALLPSPEVDEDSIAAD"
FT   CDS           2857..3954
FT                 /product="Copia-16_CQ-I_1p"
FT                 /translation="MKSLTKNGTWTLAKLPDGRAPVSCKWVFAVKRGLDGD
FT                 RVRYKARLVARGFSQRKGFDYGETYSPVAKLDTLRTVLAVANREKLVVHQM
FT                 DVRTAFLNGTLEEEIFMTQPEGFEEGTDLVCCLKKSLYGLKQASRAWNERF
FT                 NNFVVDRLKFERSLNDQCLYTRKDERQTLIIVLYVDDIVIAGTTLKAVETI
FT                 KRCFFNEFDMTDVGEIKCFLGMQVERNREEGVMRISQKQYMESLLRRFGME
FT                 DCKPVSTPIESRLKLHKGTEEERTSQPYRELIGCLTYACLTTRPDLAAAVN
FT                 FLSQYQSCPNEAHWKHLKRILRYIKGTLDVGLVYRKNLEAPTVEVFADADW
FT                 ANDVLDRRSVSGGIFKVFGSTVA"
XX
SQ   Sequence 4357 BP; 1075 A; 1082 C; 1363 G; 837 T; 0 other;
     ctttaggttt tgggcccggg taacgtttcg gatctaccgg ttatcgcggt caaagtgttt        60
     tcggtgatgg aggggacaag tcggaaaagt tgttccttcc gttctttgac ggcaccaact       120
     acactcaaac cccgatggtt tgacaccaac tgttgtcaaa cgaacggggt cactttttag       180
     tttgacaccc cttttacacg gatttcacac acactaccaa acgtttgttt tgatagtgtg       240
     cgtgagggcc gtgtaaaaag tgacagttcg tcacttttta gtttgacttt gaccaaccaa       300
     cggggtacaa attaaaaaag tgtcaagcga aaaagtgacc aaccaccggg ggttgagtgt       360
     acaatgcctg gcggtatcgg atgctgtccc tcctggagga acgcgagttc ctggagtgca       420
     tcgaggcgaa cgtggcagat gttccggcgc tgaaggacga ggaaggtgat gacgcggcca       480
     agcagctgga aaaggcgcgg ctgcgggaga ggaggacgaa gcgggatcgt tcgtgcaaga       540
     atctgatcat ctcccggatt aacgacgatc agttggagca tgtccaggac aagaccaccc       600
     ccaaggacat ctgggacgcg ttgaagcaca tttttcaacg gaaaagtttg gcgcgccgga       660
     tgtacctgaa gaaggaaatc ttgacgctcg cgttggggaa cacgtcgctg cagcagcact       720
     tcctgacctt cgacaaactg gtccggcagt accgtgcgac tggagcggac atggacgagc       780
     tcgacgctat ctgccatctt cttctgacgc tgaatgcgag ccccaagtac gctgccgtcg       840
     tgacgagtct ggatacgcaa ccggaagagc agctctcgct cgagtttgtg aagtgcagac       900
     tacttgacga ggagacgaag cagaagagcg tccagattgt gatcccgaag aaggaggaga       960
     cggcgttcgt cggggcgaag gcgcagcagc agaagccgaa gcagaagaag aagctgcggt      1020
     gctacaactg caaagaagaa ggacacaaga tgtccgactg cccgcagaag aagaagaagg      1080
     aagtgaaagc aagtgcaaac atggcggaag aacaaagtgc agtgtgtttc gctgggttga      1140
     gcagggggga aagtgttccg gagcaaccag tgacctggta catcgattcg ggctgctcag      1200
     accatctcgc gaacgacaag tccttgttcg tggaactcga accactgaag tgtccggtgg      1260
     agattgcaat cgcgaagaac gacgagtgta tcgtggccaa gcattctggc aaggtgaaag      1320
     tgatctccaa agtgaacgac aaggacattc tctgcacgat tgaaaacgtt ctgtttgtgc      1380
     ccgaattgcg ttgcaatctc ttctcggtca tgcgtgttga cgatgcggga atgcgtgtga      1440
     cctacgccga gggtgaagtc gcgatctacc gtgggtcgga gctcgtcgcg agtggaaaac      1500
     gagacgggaa gctgtaccgt ttgaacttcg tgcgcgcgcg cgttggcgaa aacaagtcga      1560
     tgttgacgtg cggactcgtg ccgaagaacg tccagctgtg gcaccgtcgg ttcggccact      1620
     tgaacgcgaa gtcgctcgac cagctgattc gccgggacat ggtctcgggt ttgaagctca      1680
     acggtgggca gaatggcaaa gaactcgtta cgtgcgaagc ttgtgtgctc ggcaaacaaa      1740
     cccggaagcc gtttgtagtg cgcgaaggca aacgttcgtc gcgagtgctc gagttgatac      1800
     actcggatgt gtgcggaccc atttcgccgg acggcttgga cggagcgaag tacttcgtga      1860
     ccttcatcga cgactggagc cacttcgtcg tggtttacct ggtggaggcg aagagcgagg      1920
     tcttccggta cttcaagatg tacgaggcca tggcgaccgc caagttcggg aagaaagtgt      1980
     gtcggctccg ctgcgacaac ggcggggagt acagaagcaa cgagttcgag cagttctgtc      2040
     aggagaaggg catccaggtg gaatggacgg cgccatacac acccgagatg aacggcacaa      2100
     gcgagcggtt caaccgcacc ctcgtcgaga agtctcgagc catgctcgag gacagtcgtg      2160
     ttgacaagaa gttctggggt caagcgatcc agacagcggc gtatctgacg aaccgcagtc      2220
     cgtcgagtgc gcttcctccg gatgtgacgc cgtacgagca gtgggaaggt aagaagcctg      2280
     acgtctccaa gttgcgtgcc ttcggctgtc ccgtgtacgc gcacgtgccg aaggagttgc      2340
     ggaagaagtt ggatcccaaa gcttggaagg ggatcttcct cggatacacc cgcggcggct      2400
     accggatcta caacccagaa ctgcagcgca ttgtgcacac acgagacgtg gacttcctgg      2460
     aactggagaa gcccgaacac aaggcgaagt ggaacgacgc agacgtggct ctgttgccgt      2520
     cacctgaggt cgacgaagac tcgattgcgg ccgattgagc aagaaccgga agaaagccag      2580
     gtggagacag acgaagaata cgaaagtttc caggaggaat ccgaaggtga accacacgag      2640
     gaagagccga acgtcgagaa tccgccagaa ccaggaccga gcggcggcag gccgcagcgt      2700
     ccgcgtaatc caccggactg gcacaaggac taccaggtcg agtacgcagc tttcgcgctg      2760
     aacgcaacca gctacgtgga cgatgtcccg agttcgctgg ctgaggcgcg caagagaagt      2820
     gactggctga actggaaggc ggcggtggac gacgagatga aatcgcttac gaagaacgga      2880
     acgtggactc tggccaaact cccggacggc cgagcccccg tgagctgcaa gtgggtgttt      2940
     gcagtcaagc gcggattgga tggagatcga gttcggtaca aggcgcgcct cgtggcacga      3000
     ggtttcagcc aacgcaaggg attcgattac ggggaaacct attcgcccgt cgccaagctg      3060
     gacaccctgc ggacggttct tgccgttgcc aatcgtgaga agctcgtcgt gcaccagatg      3120
     gacgtgcgca cggcgttcct gaacggaacc ctggaagagg aaatcttcat gactcagcct      3180
     gagggcttcg aggaagggac agatctcgtt tgttgcctga agaagtcgct gtatggcctg      3240
     aagcaagcat cgcgcgcctg gaacgagcgg ttcaacaact tcgtcgtgga tcgtttgaag      3300
     ttcgagcgga gcctgaacga tcagtgcctt tacacacgaa aggacgaacg gcagactttg      3360
     atcatcgtgc tctacgtcga tgacatcgtt attgccggca cgacgctgaa ggctgtggag      3420
     acgatcaaac gctgcttctt caacgagttc gacatgaccg acgtcggaga gataaagtgc      3480
     tttctcggga tgcaagtcga acggaaccgg gaggaaggcg tgatgcggat cagccagaag      3540
     cagtacatgg agagtttgct gcggcgattt gggatggaag actgcaaacc tgtttccact      3600
     cccatcgaaa gtcgcctgaa gctgcacaag ggcacggagg aggaacggac gagtcagccc      3660
     taccgagagc tcatcgggtg cctgacttac gcctgcctca ccacaaggcc ggatctggca      3720
     gcagcggtaa acttcttgag ccagtatcag agttgcccga acgaagcgca ctggaaacac      3780
     ctcaaacgga tactgcgcta catcaaagga actctcgacg ttggccttgt gtaccggaag      3840
     aacttggaag cgccaaccgt ggaagtcttc gccgatgcag actgggcgaa cgacgtgctg      3900
     gacagaaggt cggtaagcgg tgggattttc aaggtgttcg gatcgacggt ggcctgaatc      3960
     acacggaagc aacagacggt ctcgctatct tcgactgaag ctgagctcac tgcgctttgt      4020
     gctgcggtgt gtcacgagtt gtggctggga cgtctcctgc aagatctcgg attcaagcca      4080
     gaagaaccgg tccgagttca cgaagacaac caatcaacga tccgggttgc ggaggaagca      4140
     aaagacttcg ggcgtctcaa gcacgttgat gtcaagattc acttcatccg tgacctcatc      4200
     aagcagaagc ggatcaagct ggagttcata ccgtcggcga accagcaagc ggacatgatg      4260
     acgaaggggc tacctgtagc agcttttcgc aagcagtgtt ctgctatcgg actggagcgt      4320
     tgcagcggtt gagcaggggt gttaggaagg caacctc                               4357
//
ID   Copia-16_CQ-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   AAWU01015501;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_CQ_;
KW   Copia-16_CQ-I; Copia-16_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-169
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 348-348 (2011).
XX
DR   GenBank; AAWU01015501; Positions   12038   11870.
XX
SQ   Sequence 169 BP; 51 A; 44 C; 29 G; 45 T; 0 other;
     tgccaactaa accaaccctg taccccggaa gtagtaccaa cctgacggcg cgagtgtagc        60
     tgtcaaacat cattctcaag taaaacgttc tcgaataaac acgcggaaat tttgtagtcg       120
     aacttaaatt cgttttaatt tcgtttttcc gctgccattc cgaaaacca                   169
//
ID   Copia-16_SI-I repbase;    DNA;    INV; 4004 BP.
XX
AC   AEAQ01021270;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_SI_;
KW   Copia-16_SI-LTR; Copia-16_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4004
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01021270; Positions    7541    3538.
XX
CC   Positions [1454-1951] - Integrase core
CC   'CGTCC' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(53..1111,1115..2542)
FT                 /product="Copia-16_SI-I_1p"
FT                 /translation="MADTTKTTLAKLNRQNYFVWKYRMEILLMKEKLWSVV
FT                 NEDKPVTGTDGRSAEQVAAWQQRDDQARGWIGLLVDDSQFCYIRNSTTAKK
FT                 AWYALKAYHEKDTLSNKVTLIRRICCSKMEKSGNMDDHLTNLTGLFQKLTD
FT                 LGEELSDSWIVGMINSLPRSYDTLVTALKTRLEADLTLSLVQSKLLAEHNR
FT                 RKEAHGGDGGEAVLKTIVRSTTCFFCKKSGHIKRDCTQYKNWKEKQNKKTK
FT                 TKEKQDKENKVPKLEKLNKVEQNQEFLFMVKAGSHAGWVIDSGATCHIASD
FT                 ERYFVSLDKTVRNNLNVANCEKVSVKGKGTCVIPFVNVDGVESRATISEVM
FT                 YAPDIDGNLLVKKLLDNGYTMNFVPGACEILYKDRKMGIADEHSNLFRLRK
FT                 PIRACMVREHSSKCIHYRHRVFGHHDPEAMKLMCLKELTNDMVIEDCDIKT
FT                 LCEVCAQGKLTRMKFPKQSSSKSTEPLDLIHTDVCGPMQTVSPSGMRYVLT
FT                 FIDDFTRHTVIYLLKQKSEVEIKLKEYIEMVKTMFGRKPKVIRSDRGEEYV
FT                 RKQVIGMLQNEGIRVQYIAPYTPQQNGVAERKNRTLIEMARCMLFEAGLPY
FT                 SFWAEAVNTANYIQNCSPSQSVDKTPHELWTGSKPGTKHLAIFRIKRFVHI
FT                 PSEERRKLNKVAAPMIFVGYDEHSKAYWCYDPLQKKMVISRDVRFTGKMYS
FT                 ASKVDINLSKGKISSEDESANVEIDLNKCDPEPVIVQEEWNDIREWNNDSE
FT                 YESANERTEQSDNEEGKAEQQQQLRVSQRVNKGVPPRRFIEEINAVSTQVT
FT                 EPKTLTKVMASEQNDEWIKAMTVRWTR"
XX
SQ   Sequence 4004 BP; 1345 A; 742 C; 1002 G; 915 T; 0 other;
     ggttatgggc ccaggttccg tgcgtgcata aagtgatttt gcatacgaca aaatggcgga        60
     cacaacaaag acaactttag caaagttaaa cagacaaaat tacttcgtat ggaaatacag       120
     gatggagata ttactcatga aagaaaaatt gtggagtgta gtgaatgaag acaaacctgt       180
     aacagggacg gatggcagaa gtgcagaaca ggttgccgca tggcaacagc gagacgatca       240
     agcgcgcgga tggattggac tcttggtcga cgacagtcaa ttttgctata taaggaactc       300
     gacgacagca aagaaagcat ggtatgcgct caaggcatat catgagaagg acacgctgag       360
     caataaagtg actctgattc ggcgtatttg ctgcagtaaa atggaaaaaa gtggcaacat       420
     ggatgatcat ttgaccaatc tgacgggtct gtttcaaaaa ttaacagatc ttggtgaaga       480
     gctttcggat agttggatcg tcggaatgat taacagccta ccaagaagtt acgacacgtt       540
     ggtcacagcg ctcaagacaa gactggaagc agatctgact ttgagtttgg tgcaatcaaa       600
     gttgctcgcg gaacacaatc gccgaaaaga agcccatggt ggcgatggcg gtgaagcggt       660
     attgaagaca atagttagaa gcacaacatg ttttttctgc aagaaaagtg ggcacataaa       720
     gcgtgattgc acacaataca aaaactggaa agaaaaacag aataagaaaa cgaagacaaa       780
     agaaaagcaa gataaagaaa ataaggtgcc gaaactggag aagctcaata aagtagaaca       840
     aaatcaggaa tttttgttca tggttaaggc tggcagtcat gcaggttggg ttattgattc       900
     aggggctacg tgccatatag cgagcgatga acggtatttc gtgtcgcttg ataagacagt       960
     gcgcaataat ctcaacgttg cgaactgtga aaaagtaagc gtaaaaggca aagggacatg      1020
     cgtaatccca tttgtgaatg tagatggtgt tgaatcgcga gctacaatct cagaagtgat      1080
     gtatgctccg gatattgatg gaaacttact ataggtaaag aaacttttag acaatggtta      1140
     tacaatgaat tttgtgccgg gcgcgtgtga aatcttgtat aaagacagaa agatgggaat      1200
     tgcggacgaa cattcaaatt tattccgatt acgcaaacca ataagggcgt gtatggtcag      1260
     agaacacagt tcaaaatgca tccactatcg gcatcgagtt tttgggcacc atgatccaga      1320
     agcaatgaag ttaatgtgtt tgaaagaact gaccaatgac atggtgattg aagactgtga      1380
     cattaaaaca ctttgtgaag tgtgtgctca agggaaactg acacgcatga aattcccgaa      1440
     acaatcatca agcaaatcga cagaaccgct cgatcttatc catacagacg tttgcggacc      1500
     gatgcagaca gtatcaccaa gtgggatgcg ttacgtgctc acatttatcg acgactttac      1560
     taggcataca gtaatttact tgcttaaaca aaagtcagaa gttgaaatta aactgaagga      1620
     atatatagaa atggtgaaga ctatgtttgg gcgtaaacct aaagtgatca ggtcagatcg      1680
     aggagaagaa tacgtcagaa aacaagtcat tggaatgctg caaaacgaag gaattcgagt      1740
     gcagtatata gcgccataca cgccacagca gaacggcgtg gcggaacgta aaaaccggac      1800
     gcttattgag atggcgaggt gtatgctttt tgaggccggg ctgccataca gtttttgggc      1860
     agaggcggtg aatacagcca attatataca gaattgttca ccttcccagt cagttgacaa      1920
     aacaccgcac gaactgtgga ctgggagtaa accaggtacg aagcatcttg caatttttag      1980
     aattaaacgt tttgttcaca taccctcaga ggaacgacgc aaattgaaca aagtggcagc      2040
     accaatgatc ttcgttgggt atgacgaaca ctcaaaagca tactggtgct atgatccgct      2100
     tcaaaagaag atggtcatca gtcgagatgt gcgctttact ggcaaaatgt attcagcatc      2160
     aaaggttgac atcaatttat ccaaagggaa aataagttca gaagacgaat cagccaatgt      2220
     cgagatcgac ttaaacaagt gtgatccaga accagtgatc gttcaagagg aatggaacga      2280
     tattcgtgag tggaacaacg attcagaata cgaatcagca aatgagagaa cagaacaatc      2340
     agataatgaa gaaggcaaag cagagcagca acaacaatta cgcgtctcac agcgcgtaaa      2400
     taagggcgtc cctcctcgtc gctttatcga ggaaatcaat gcagtaagca ctcaagtgac      2460
     agaaccaaag acattgacca aagtcatggc tagcgaacag aatgacgaat ggatcaaggc      2520
     catgacagtg agatggactc gctgatgagg aatgggacct gggagctgtg cgagctgcca      2580
     agcgatcaaa aaccagtagg atgcaagtgg atttttaagt tgaaaacgaa tgcagacgga      2640
     agcatcaaat gctataaagc gcggttaatc gcccaaggtt tttcgcaaaa atatgggaca      2700
     gactacgatc aggtatttgc tcccgtggta aagcaaacga cattccgaat tcttttaact      2760
     atagcagcgg aacgaggcat gctggtattt cactgggatg caaaaacagc tttcctaaat      2820
     ggaaaactga aagaaaagat ctgtatgaaa cagccaccag gatatgagcg agaaagcgca      2880
     ttggatcttg tctgcttgct catgaaaagc acggactcaa gcaggcagct aaatcatgga      2940
     acaaggcgat tcatgatgcg ctagagaaga tcgggttcat ccaggatgat gcggatccgt      3000
     gcatgtattc ggcaaaactg agtaatgagt ggtgctttat attcatttat gtggatgatg      3060
     tggtcattgc aagtaaggag cttcaagtga ttgaatcagt gaagaatgcg ctctcttcgg      3120
     aattcgagat gcaggacctt ggggagatcc ggcactattt gggattggag gtcaataaga      3180
     atccaggagg atattaccaa atctatcaga caaactacat tcatcaagtg gcatcatcgt      3240
     ttgggttaag tgaagccaag gcatcaaatg tgccaattga cccaaactac aacaaatcaa      3300
     aggataaaac agaggttttg ctcaacaaca caaactatca acgtctgatc gggtgtctgc      3360
     tatatatttc gatatgcact cgaccagaca tatcggcgag cgtgtcaatc ctggcacaaa      3420
     aggtcagtag accaactcaa cgagactgga acgaattgaa gcaagttgtc aaatacctgg      3480
     ttggtagttc caaattgaag ctgacattgt aaggcaacaa agcaggagtt tgtttttggc      3540
     tacgctgatg caaattgggc taaaagcaag acagatcgga aatcaaacag tggctacata      3600
     tttctggtaa atgggggaat tgtgagttgg gcatgtcgga agcagacgtg cgtggctcta      3660
     tcaacaatcg aggcggaatt catcgctctg tccagtgctt gtcaagaagc tttacggcta      3720
     catcgaatct tagatgacat gaagcaacca gttagtggac caatcactat atacgaggac      3780
     aaccagagct gcctcaaact cattgaggaa gagaaactgt caaaccgcac taaacatatt      3840
     gatactaagt atcattttgt gaaggacttc gtcaacagag gggaagtgca atgcaaatac      3900
     tgtccaacag aggctatgct ggcggatcta cttgcaaagc ctctaccagc acatcggttc      3960
     aaggcattgc gagaggattg tggtcttgtg tgattaaggg ggag                       4004
//
ID   Copia-16_SI-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   AEAQ01021270;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-16_SI_;
KW   Copia-16_SI-I; Copia-16_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-341
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01021270; Positions    3537    3197.
XX
SQ   Sequence 341 BP; 94 A; 57 C; 72 G; 118 T; 0 other;
     tgttgaatat aacaatcaca caggagtatg gcgctagggt cgcggtctag ttactattga        60
     tgtgatagcg cttgagtcac gatatggtta taaatcagag ttggcattat tgtctatggt       120
     ctagattctt taacattttg tgtgtaccga tactcccttt ttcaaaaaca aggcttgctt       180
     atcttcctct ctgtatctga tgtctcatgt ataagtcgtt acgtaataaa ggattctgtg       240
     tgatattaaa gtacgtacaa atacgcgttg attggttaac ccgttcagtt ttcagtatat       300
     cacggtcaag tgaagaatac aagagggctt agttttcaac a                           341
//
ID   Copia-170_AA-I repbase;    DNA;    INV; 4093 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-170_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4093
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4093
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1441-1441 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4093 BP; 1125 A; 803 C; 1235 G; 930 T; 0 other;
     ggttatggtc ccagcataac cgcgtttttt tttcgataaa gttccgcgaa aagtgttgaa        60
     atggatgaag aagccagaag tctccggatt aagccgttcg acgggaccgg atttaacaac       120
     tggtgcttcc gtatgaaagc atatctccag cagctggaag tgttacggtg cgttgaggta       180
     gcggtggagg atgaagattt ctggatcatt ccgggcacgg atgcggcaga cgtgaaggcg       240
     gtgaaggagg cgaaacagag aacgcgaata aagcaggaca acaagtgccg ctcggtgctc       300
     atccaagcga tagcagacag tcatctcgaa tacatcaaag acaaacagag tccgaaacaa       360
     atttgggacg gacttcatga tgtgttcgaa aggaagagca tcacaaatcg tttcctgctg       420
     aagcggcagc tcctctcgat gcggtaccag gaaaacgatc ggcttcagga ccactttctc       480
     cgctttgata agttggtccg cgagatcaaa ggtgccggtg ctcagatgga cgaggaagac       540
     gtcatttgtc atctgatgtt gacaatgccg tcgtcatacg acgcagtcac cactgccatg       600
     gaggcggtgt cggaaaagct caccatggat ctcgttcggc gtaagtacct ggatgtagag       660
     gcgaagcgaa gagggcagca gcaggaagaa gtggaagaag cggcttttgc gggaaagaag       720
     aacacaaaat tcaagtgttt tggttgtggg cagccgggac atagaaaagc acagtgcccc       780
     aaaagtggtg aaaacaaacc agtatttccg aagcaagcga agaaaagtgc gatgcaaaac       840
     gcgaacgtcg gtacgaaagc ggtttcgttt attgcggcgg acagtcgatc gaatgttgtt       900
     gcggctagtg cggtggcggg ttcaaagtgg tatttggaca gtggtgcatc cgaacatatg       960
     tcgaacaaca aggcactttt cgattatttg gagaaaatta agccggtggt gattcaaact      1020
     gccaaaagtg gagtgaacat gattgctcaa tacaaaggac gtgtcactgc ttgtgcggtt      1080
     gtgggaggaa gcgaaattga aatccggatc gaagacgttc tctacattcc ggaattgtcg      1140
     ctgaacttgt tgtcgctgag gcgcctcgaa aactcgggta agaaagtgat ttttttcggg      1200
     gggcgcgtga cggtagaagc tgacaatgaa gtggtggcta ccggccgaca acacggcagg      1260
     ctttacggta tggacttcga gtgtgtgaag gtgcggaatg ggagtgtgtc atccagtgcg      1320
     ttggtgaccg gtagggtgaa caagcatctg gaactgtggc accaacgttt cggccatctc      1380
     ggtaatgaaa atctgctgaa gctagtgaac aagagaatgg tggagggcat gaaaatcatg      1440
     gatgccggtg agaaaaacga gaagctactg tgtgaaccgt gtatcaccgc gaaacaaacc      1500
     cgcgaaccgt tcaaaccgcg tagtgattcg aagcgcgcgt cgcgtccgct cgagatcgta      1560
     cacagtgacg tatgcgggaa gataacgcca gtgtcgtggg acggaaatga gtatttcgtg      1620
     tcgttcacgg atgattatac tcatgtttcg gtagtgtatt tgatgaaaac aaaggaccaa      1680
     gtgcttgact gtcttaagga atatgaggcc atggccagtg ctcatttcgg ctcgaagatt      1740
     tctcgcctca gaacggataa tgggggtgag tattctggcc gagcaataaa ggagttctgt      1800
     cgcagcaagg gtattcgtat ggagaaaacg gtgccctata cgccagagca aaacggcgtg      1860
     agcgagcggc tcaatcgtac catcgaagaa aaggccagag cgatgctgca agcgagtggc      1920
     cttccgaagt gcctgtgggg tgaagctgtg tacaccgctg tgtatttgat gaatcggagc      1980
     cctagtgctg cggttgccgg agatgtgaca ccgtacgagg cctggaatgg tcataggccg      2040
     gatgttgcga atttgcgtgt ctttggtagt gactgctaca ttcacgttcc gaagcagttg      2100
     cgcaaaaagc tcgatgccaa gagcgaaaag gtaagctttg tagggtacgc tccgaatggt      2160
     ttccgattgt ggaacggaac caaggttttc gtgggccgtg acgtaatatt caacgaggat      2220
     gagttgcgtc tgtgtacggt gaagtctggt aagaagacaa gcgaaaacga taaggtggtt      2280
     atcaaggatc aggttgctga cgaaaattgt gaaccagaac taagactagg agaaagtgat      2340
     acagagctag gaagtgattc ggaaaacttt ttctcggacg atgacaatga cgatagtgga      2400
     agagaaaatt ccggcggtgc ctcgggtggt ccggtagtag ataacagtgt tcgaagaagt      2460
     ggtaggaaca tagtcccacc gagttggcac agtgactaca atatggacat aagtgcgttt      2520
     gctttgagtg ccgaagagtt tcttgataac attccgactg atgtggaaga actcaaacag      2580
     agaggtgact ggctgtcgtg gaagagtgcc atcaaggacg aactggaatc acttgagaag      2640
     aatgatacct ggcaacttgt tgaattaccc gctggcaaga aggtgattga cagcaagtgg      2700
     gtatttaagg taaagcggaa cagtgaaggc gaggtggagc ggtataaagc cagattggtt      2760
     gcacgtggct ttacgcagcg gccgggattc gactttactg ccacctactc ccctgtggtg      2820
     aaaatggcga cgctccggat tcttctagcg atggcgaacc aaagaggctg gcacgttcat      2880
     cagatggacg tcaaatgtgc tttcctgaat ggctcgcttg atgaggaaat ttttatgcgt      2940
     caacccgctg ggtttgaaag ggggaaaaac ctggtttgca gactccggaa ggctatatac      3000
     ggtttaaagc aagcttcccg gaattggaac caacggtttc acgactttat gtgcaaacta      3060
     ggattcaaac gcagcgagta tgatttctgt ctgtaccagt ggtcgtgtga tggagtaatc      3120
     gtctttgtgg ttatttacgt ggacgatatt ctgatcgtga gtaactcgga gaaggcgatt      3180
     gtcgggatca agaagcggtt ttcaaccgag ttcgagatga cggatctaca ggatgtgaag      3240
     agttttctcg ggttgaacat tcagcgagat cggcaagcgg gaacaatgac catagaccag      3300
     aaggcgtaca tccagagcgt gctagagcgg ttcggaatgg actgttgcaa accgtcgccc      3360
     attccaatgg agccgcacct gaagttaatg aaaggcaata aggagcagac tacagacaag      3420
     ccgtacaggg agctcatagg gtgcctcatg tacctaatgg tgacttcgag accggacatc      3480
     tgtgcggcag tgagctactt cgctggattt cagtgcggtg caaccgaaga acactgggtg      3540
     cacctcaaac ggatattgag gtacttgaaa ggcactatga attacaagct gttatatcgt      3600
     cgagacgaat cagcggagat gttggaagcg tacgcggacg cggattgggg taatgatccc      3660
     aatgatcgac gttcggtgtc cggatatgtt gtcaagctgt ttggatcaac ggtgacgtgg      3720
     gcgaccaaga aacaatcgtc tgtggcctta tcgaccacgg aagcagagct gatggccttg      3780
     tgtcaggcca gctgcgaagt cgtgtggatc gtgaatgtgc tgaattctgt tggagtaaag      3840
     gtagtagaac cgattaccgt ttacgaggat aaccaacctt gtattgcggt cacggtggag      3900
     ccacgaaaac ataagcgaat gaagcacgtc gaaattcaaa acttttttgt gcgagaacta      3960
     gttcagaaag ggacagtaga gttgaaatat ctggcgaccg aagatcaagt ggcagatgta      4020
     atgacgaagg ggctggcttc gccaagattt cataaactca gagacgtgct tggggtaatt      4080
     aattgagggg gga                                                         4093
//
ID   Copia-170_AA-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-170_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-137
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-137
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1486-1486 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 137 BP; 41 A; 24 C; 24 G; 48 T; 0 other;
     tgataacagt gtaactgggt aaatatcaat tgaattatca taaccctgat tagctgtgta        60
     tcgaacgtca aataaaatgt cattcgttgt tcttgtgcct actgcgaaac acgcgtttta       120
     tttcactctg gttaata                                                      137
//
ID   Copia-171_AA-I repbase;    DNA;    INV; 3994 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-171_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3994
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3994
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1442-1442 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3994 BP; 1211 A; 790 C; 1056 G; 937 T; 0 other;
     ggttatgggt ccctcggcga aagagaatta cggaattcct caactgaaag gggagaactt        60
     tgcgaactgg cagtttagag tgaagttgca tatggaagcc gcagaagttt cagaagcgct       120
     agaagaagat gttccaggtg cagatcccga acggaagagg tttcttcaaa tggaccggaa       180
     ggccaaatcc ttactagtca gcttcatctc ggatgagtgt ctcgagatag ttcgggaaaa       240
     gcaaacggcc aaggccatgt ggaaggcgct tgaagagacg tttgccaaga agtcggtggc       300
     aaaccaaacg gtactacgga aacaactggc aagactccgg atgagggcag gatcgtcaat       360
     gcgcagtcat tttcaagctt tcgatgacct tgtacggcag ctcaagacag caggtgctaa       420
     gttagaagag aacgatttag tatcgcagct gttcctgaca ttgccggaca gctacgatcc       480
     tgttgttacg gcgttagaaa acaagaatga agctgaactt acgctggaag ttgtgaagca       540
     aagattattg gctgaggaaa tgaagcgcac agatcgttat gaagacccta ttcaagaaaa       600
     gggagcagcg tttgtgggag gacggaataa gaaagtcaag aagtttacgg gaaaatgtca       660
     ccactgtggc aaagtcgggc atatgcagaa ggactgccgg ctgaagaaac atcagggtga       720
     agcaaactcg gcatgtgaag cgaaggcagt ctccttcatg gtgaaccgaa ccacatcgtt       780
     gaagaaatcc aatcaaattg tgttctgcgt tgactcggga tgtagtgacc acctggtcaa       840
     caacaaggat tatcttcagt ccctgcggaa gttggaaaaa ccgttcgttg tggatgtagc       900
     taaggatggt gtgacgttga tcggagagta cgaaggtgag atacgaggtt tcaccaaaac       960
     tgggatccgg tttgagatga agaatgtggt ttatctgcca gacctccgtg agaatttgtt      1020
     gtctgtgaag aagctatcca aagctggcat cgaactgtcg tttaccggta aaactggaag      1080
     aaattcagct ataatgaagc atgaccgtga agtaattgca gaagcgttcc tgaatagaaa      1140
     tctgtacgag cttgaattgg ttgttgacga agttacaccg aaggccaacc tgtgtggagc      1200
     tgaggtgagt tcaatatggc atcgccgtct gggtcatgcc agccaaaatt ccatggataa      1260
     tcttatgaag cacggaatgg ttaccggaat ccaagaaaag ctgaagaaaa tcgatttctg      1320
     tgaaacatgt gtcaagggaa agcagtgtag agatccgttt aatggttgcc gtgaacgaac      1380
     aagtcgtgct ttggagcgga tacactcgga tgtctgtgga cccatagatc ctccagcgtg      1440
     ggatggatcc cgctattttg tttcattcat agacgacttc acccactttg ctgtaattta      1500
     caccatcaag aggaaatcac aggtatttga ttgctttaaa gaatatgtgg cgatggcgtc      1560
     agcccattgg aacctcaaga tcagcaagtt gactgtagac caaggcactg aatattgttc      1620
     gaatgagcaa cggaaatttt acaggcaaaa gggaatcctg atccagccaa cggtcgctta      1680
     ctcaccgcag caaaatggtg ttgcggagcg attcaatcgc acgttggttg agaaggtaag      1740
     atgcatgcta atcgactcaa gaatgccgaa aaatatgtgg tgtgaagctg cgtttactgc      1800
     aacgtacctg ctgaatagaa gcccgaccat ggcaattcaa gaaaagatca cccctgctga      1860
     atgttggacc agaactaaac cggatttagg aaagctacga atatttggat gcaaagcatt      1920
     tgcatggata cctacccaac tgaggaagaa gctggatggg aaaagccgtg aaggagtcat      1980
     gatcggatat gctccgaacg gttaccgttt atgggatagg tcagcaagaa aagttttcat      2040
     tgcgagagat gtacgcttca atgagtcctg tatgccgttt gcaacaaatt cggatccggt      2100
     tgatgatagt ccgctggtga tttcaatacg ttacgagcaa gagggggaga tgatgatgct      2160
     gcgaacgatg tggaaaccgg ccgtgaaagt gacacagata atgatgatga tgatgctgat      2220
     caagtttccg aaaatttccc cgatgaactg agtacagacg aggacgaatc tcaagttgaa      2280
     gaccaacacg atacacaacc tgaggcgctc ccttcgcatt caagacgtga agactgcata      2340
     gagtcaacca cgaggcgcag cgaacgggag cgcagactcc caggtaagtt cctggatttt      2400
     atcaccggtt ttagagcaac ctctgctgtt aaaattccca accatgtaga ttcaccgacg      2460
     aactatgcgg aaatcacaga ccgtgatgat agggcgctct ggtatgctgc tgtgaatgat      2520
     gagctaaaat ccttgaagga caatcaagtt tggaagatcg ttcaatgccc ggatggtgtg      2580
     agaccgttac aatcgaaatg ggttttctgc actaaacaag acgaaaacgg cgttgtcatc      2640
     agacacaagg caagacttgt aatcaagggt tacctgcaga aacctggatt ggactatcaa      2700
     gagacgtatg ctccagtggc aaaactcacg acgatacgga cagtattggc agttggcgtt      2760
     caaaaagggt attacttcca ccagatggat gtgaaaacag cctttctgca tggcgaatta      2820
     cacgagcaga tttacatggc gattccagac ggagtgaagg cgaaccatgg tgaagtgtgt      2880
     caactgaaga agtcccttta tggccttaag cagtcgccaa gatgttggaa cgagaaattc      2940
     aacaatgtca ttttgaagct cggattcaag aggtctagac atgattattg tctttatgtg      3000
     cgacttggaa aaacagccgg tgaaaccata ttcttggtac tttacgtgga tgacctactt      3060
     atagctggaa cccatttgag cgaaattcag gccctgaaac tgcagctgtc ccgtgtgttc      3120
     aatatgaccg actgtggagt agtgaagcac tttcttgggg tcaagatcca atacgatcag      3180
     caaaacggaa gaatggaatt atcacagaaa gcaaatatag cgaagatgct tgaaaaattc      3240
     ggtatggctg aatgcaattc atcacgtagt cctatggaga aaggtctaca actaaataaa      3300
     acccaaggtg agcgaaccca agagccatat cgagagcttc taggaagtct gatgtacacg      3360
     atgatgtcga caaggccgga tatctgcttc tctgttgggt accttggcag atttcaacaa      3420
     caaccaaatc aacagcactg gatggcactc aaacgtgtcg tacgttattt aaaaggaact      3480
     caacatatag tgatgaaatt caaacggtac gaccacgcga agccgcttat tggttttgct      3540
     gatgcggact gggctggtga ccgagaagat cgcaagtcag tgagcggata catttttcaa      3600
     gtctatggaa acaccatatc gtggtctagc aagaaacaaa caagtgttgc aatgtcatcg      3660
     agcgaagccg aacacgttgc cttgagttgt gctgctgccg aagctatatg gttgacaggt      3720
     attctggagg atttaggagt gaagcaaatc gaaccggtta cgatgttcga agataatcac      3780
     ggatgcatcg gtatggcgaa aaatttggag tccaaacgag ctaaacatat agacatccga      3840
     tatcattttg tccgtgatca cgttgccgaa gggaagcttg acgtacgatc aataggaaca      3900
     aaggatcaat tggctgacat atgtacgaag gcactagatg gtgatcgttt tgctactctc      3960
     cggaagaatc tagggttaca cgatcgagag gggg                                  3994
//
ID   Copia-171_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-171_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-229
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1487-1487 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 229 BP; 65 A; 55 C; 33 G; 76 T; 0 other;
     tgtaatcgaa gttaccattt gtggcgatcg ttcagcaact gtgatcaaag ttacctttga        60
     agatctgagc tgccaatcgt catcgacctg atttgttatt cctaatcaag ccctcatcaa       120
     gagcagacgt attttattac aactctacaa taaactgtta tttgttcatc aagctctatt       180
     tactacttcc ttcccacttt tgagatccga acaagaccaa atctcttca                   229
//
ID   Copia-172_AA-I repbase;    DNA;    INV; 4078 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-172_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4078
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4078
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1443-1443 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4078 BP; 1126 A; 847 C; 1184 G; 921 T; 0 other;
     ggttatgggc ccagtggatg tcccggaagt agcggaagtg ccccttcggg aatcgtggac        60
     tattttttcg gttgcggtgt ttcgttttcg gcgcggtgcg attcggccgg gttttggctg       120
     agaaaaacgt gttcggacaa aatggcggat atcgcaaagt tctcgttcgc gaagttgaac       180
     aatgtgaatt ggcaatcgtg gagctttcgc atgcgaatgc tcctgatccg cgaagagttg       240
     tggcgtgtga tccgcgacga agagccgaat gaagataatg ttgatgaaga atgggaacgt       300
     gacgaccagc gagcgatggc gacgattggg ctgtgtctag aagagtcgca atttggtttg       360
     atcaggaaga aagagtccgc gaagttaatg tgggaagctc tcaaaacgta tcatgagaaa       420
     ccgaatatgt cctcgcgtgt gtcgttacta aaacggttgt gctcgatcaa tttttctccc       480
     ttgggtgata tggaaaagca tttggttgac cttgacgatt tgtttgaacg tttggaaaac       540
     gtcggtcaaa agctcgatga cgcgctgaag gtggctatgg tgttgcgtag cctacctgac       600
     tcttttgaca gtttggtgat ggcgctcgaa agcaggcccg acacagacat aactctcgat       660
     cttgtgaaag cgaaattgct cgacgcctac caacggcaag ttgatcggtc gaacggtaaa       720
     tcggacgaaa aagcaatgaa atctaacgtg aaacgtgaag acggtcgtgt gtgctacttt       780
     tgtcgaaagc cgggacactt gaagaaaaat tgccgaaagt tcttggacat gcagaagagt       840
     ggtgacagtt cgggcggaca cgagcacaag caagacaatc gttcccgtgg tgcgcctcaa       900
     aaggcgaagc aagtgaagaa atccagcgag cctttgtgtt tcatggtggg ccgtacagtg       960
     aaaaatgcgt ggctcatgga cagcggtgcg tcatgccata tgacgagcga tcgcagtttt      1020
     ttcaccgtgt tcaccggcgg cgtcggcgct gatgtcgtat tagccgatgg gaagaagacc      1080
     aaaacggcgg gttccgggga aggagtgatc aaaggtgttg atgctgatgg tgatccgatc      1140
     gatattcggc tcaccgaagt gctttacgtg ccggaactgg aagggggtct gttgtccgtc      1200
     ggaagaatgg ctcgaaaggg tttcgaagtg catttctgtg aaagtggttg taagattgtg      1260
     aataaatcgg gaaatatcgt cgcggtcggt gatcgattgg gaaacttgta taaactgaaa      1320
     acagtggaag aagcaaaatc ggccggggtg tgccacagtg acaagtgtcg gcatttgtgg      1380
     catcgccgtt tcggacaccg tgacgttgat gtagtggaca gattgattaa agaaaacctc      1440
     agccgtgaca tgaagattat cgaatgtgac aaacaagaag tgtgtgaaac gtgccttgaa      1500
     ggaaaattgg cgcgtaaacc gttccccagt gttgttgacc ggaaggcgaa gaagattttg      1560
     gatattgtcc acaccgacct gtgtgggccc ttcaacaacg tgacacctag cggcaaccgg      1620
     tatttcatga gtctcattga tgactacagc cgtttcgccg taatctatct actgaaggag      1680
     aaatcggagg ccaagaaccg gatcaaggag tacgtccgat tctgcgagaa ctattttgga      1740
     gcgaagccga aggtaatcag gtccgacgga ggcggtgagt atctgaacaa tgatttgtct      1800
     actttctatg ctaaagaggg aattgtggcg caatatacca ctgcatactc accgcaatct      1860
     aatggggtcg ccgagcgcaa aaatcgctct ctgcaggaaa tggcatcctg tatgttaata      1920
     gacgccggct tagaaaagaa atactggggg gaagcaattc gaacagcagc ttttctccag      1980
     aatcgacttc cgtcaagggt catcgacggt actccgtatg aacgctggta cggagagaag      2040
     ccagccgtag atcatcttcg tgttttcggc tgcgaagctt tcgtacatat ccccgatgtg      2100
     aaacgaagca agttagaccc cagatcgcga aagctaattt tcgttggcta cgcggaagac      2160
     cgaaaaggat accgttttct tgatcgcaac acggacacca taacggtcag cagagatgcc      2220
     agcttcgtgg agtggaacaa cggatcatca cagatcgagg tgccggcgat tggccggggc      2280
     aaaggatctc gcagtggaag gaccaagcaa ccggagaacc tgagcaacga ggacgaatca      2340
     tcgagtgaag aatataccga agctgagagt gaagagcaag aggataagca gctgccgctt      2400
     caggaggagc ggaacagtga ttcgaagaag ctaccggatc gtcagacaag aagaaatatg      2460
     ccgaagaaac tatcggacta cgtcgttgga atcgcaaaat gctcaccaac agaacctgcc      2520
     acgttcagtg aagcgatgaa gtcacctgag aaggatttgt gggtccgcgc tatggatgac      2580
     gagatggcgt cgcacgccag taacggaaca tgggaattag tgcagaaccc gcaggaccgg      2640
     agaataattg gtagccgatg gattttcaag gcgaagaaaa acgaagcagg cgaggtcgtc      2700
     agattcaaag cgagagtagt ggcccaaggc ttcaaacaga aatacggtgt agactacgac      2760
     caagtctacg cacccgtcgt aagtcacaca acgctgagga cattactggc ggtcgccggt      2820
     aagcttggat atgtgttgcg gcatttcgac ataaaaactg cttatctata cggcagcatc      2880
     gatgaggaag tgtatatgaa gcagcctccg gggtatgaag tccgtggaaa agaggattgg      2940
     gtctgcaggc taagacgaag tatttatgga ctgaaacaat cggcccgatg ttggagcgag      3000
     aaactaacgg aagtcttgac gcacctcgga ttcagtcgca gttcaactga ccaatgcctg      3060
     tttatgaaga cgctgaagga tggtagcaag ctgtacatat tagtttacgt cgatgatatg      3120
     ttggtagcgg ctgcgaatga cagcgtgatt gacgatacac ttcgtggact tcagcagcat      3180
     tttgaagtta cagatttggg acgagcggcc tactttctcg gactggaaat ctcccaagaa      3240
     aatagattct actcgatcag tctcggcgcc tacatcaaga agctgatttc gcgatttggg      3300
     atgaacgacg cgaagtcaaa caaaacaccg atggatgtag gatttccaca gagagtcgaa      3360
     gtgggccatc ctttggaaga cggggagatg taccggagtt taattggagc actcctgtat      3420
     attgcggtta acggtcgtcc agatgtggcc aatcctgtag gaatacttgg caggaaggtg      3480
     agctccccgg atgcggccga ttgggtagcc gcaaagcgca tcctacggta tttaaagtcg      3540
     acgtgcgatt ggaaattggt gctaggatca tctgaagcga agtgtccggg cctcgtagcg      3600
     tactccgatg ctgactgggc cggcgatgct tcgaatcgaa agtctacaac aggcggcgta      3660
     ttctacttca acggaggagt tatcaactgg atcagcagga aacaacaatc agtcagcctc      3720
     tcaacgatgg aggcggaata ctttgcgctg agtgaagtat gccaggagat agtgtggatt      3780
     agacggctgc tgaaagatct ggatcaagcc caagacgaac caacaacagt gtatgaggat      3840
     aatcagagct gtttgagctt tatcagttct gatcgtccaa gcaaacgttc caaacatatt      3900
     gaaactcgcc agcattttgt aaggaaccta tgtgatcgtc gcgaagtccg aatggagtat      3960
     tgcccaaccg atttgatggt ggcggacatt ctaacaaaac ctctcggcac catcaagcac      4020
     cagttcttcg cggagatgtt acgattgaat ggataaggag ttggagcttg aggaggag        4078
//
ID   Copia-172_AA-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-172_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-251
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-251
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1488-1488 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 251 BP; 64 A; 66 C; 54 G; 66 T; 1 other;
     tgtcggcgta agacaatcac caacccctgg atccgcccct gtacgggcga aacagcgaga        60
     acaccattat catcaggcaa cactacttcg ctcgttccgt tcgtagctgg gtagagagag       120
     aaatcattam cagtcttttt tcgaccgcgc cagtgtaaag aagtgcgaat aaagttacgt       180
     ttcttttgtt agtttgaata ccgcgtgttt tagatcagcc gtaatatccg attgcccact       240
     gtcctcccac a                                                            251
//
ID   Copia-173_AA-I repbase;    DNA;    INV; 3962 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-173_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3962
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3962
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1444-1444 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 3962 BP; 1053 A; 850 C; 1149 G; 910 T; 0 other;
     ggttatgggc tcgtcaacga tggaaggctc cggaattccc ctgttggatg ctcttggatc        60
     gaacttcgag aactggcgtt tccgagttca actctacttg gaagcagtgg aagtttcgga       120
     ggtgctgaag aaggacgttc ctgctgaaga ggaccctgga agagcgaagt tcctgcagac       180
     cgatcgaaaa gcgaagtcat tgatcgttcg atttctttcg gatgagtgcc tcggcaacgt       240
     acgggaaaag gagacggcgc gtgatatgtg gaaggctctc gaggacaact acgccaagaa       300
     gtcggtggcc agccagaccc tgctacggaa gcagctggcg agactccgga tgaaggaggg       360
     cgcatcgatg aggcatcatt tgcagcagtt cgacgatatc gtacggcagc tcaagtcagc       420
     cggcgctaaa ctggaggaga acgatacggt atcacagctt tttttgaccc ttcccgacag       480
     ctacgactcc ctggttacgg ctttggagaa tataaacgag aaggacctga cgttggaagc       540
     cgtgaaacaa cgactgttag cggaggaatc caagcggtct gatcggttgg aagattcttg       600
     cgaagatagg agtgcagcgt ttgtcggtgg aagaaataag aagcccgaga agccgaagaa       660
     gccgtttgct ggtaagtgcc atcggtgcgg aaagcctgga catatgcaac gagattgtcg       720
     tgtcaagaag cccgaaggta aggtgaatgc ggccgttgga agtaaggctg tttcgttcat       780
     ggtgaacaag acaccagcgg agatggacca caagaagtcg actttcgtgg ttgattctgg       840
     atgtagcgat catctagtga acagcttgga gtgcatgcag tcggtgagga agctcaagga       900
     accgttcgtg atcgatgtgg ccaaagatgg cgtctcgatt gttggcaaat atgaaggtga       960
     agtcctcgga ttttccaaag aaggcgtgcg gtttgaactg aagaatgtga tcttcgtacc      1020
     tgagctgaga ggtaacctgt tgtccgtgaa gaagatgtcc cagggtggca tcgacgtgat      1080
     gttcacaacc cgtggtggaa agcatcaagc tgtgatgaag aaaaagaacg caataattgg      1140
     agtagcacat ctaagaggta atttgtacga acttgattta gatttgaacg tgacgggagc      1200
     cacagcaaat gtgtgtgctt cggatactgg gaacctttgg catcgtcgtt tgggtcacgc      1260
     cagccaatct acgatgaacg cgctggcccg gtttaacatg gcagaagggt tcggtcctaa      1320
     agtgaatgct gttggattct gtgacacctg tgtgcttgga aagcaatgca gggaaccctt      1380
     cgacggacat cgagaaagag ctagtcgtct gctggagcgg atacactcgg atgtgtgtgg      1440
     accgatcgat cctccggctt gggacgggtc gaagtacttt gtctcattca ttgacgattg      1500
     gagccatttc gcttgcgtgt acacaatgaa gaagaagtct gaagtatttg gtctttttca      1560
     agagtttgaa gcgatggtga ctgcccagtt tgaaaaacga atcagcaagc ttaccgttga      1620
     ccaaggacga gagtacggtt cgaaggaaca aaaggcgttc tacaagcgga aggggataca      1680
     aatccagcct accgttgcat attccccaca acaaaacggt gttgctgaga gattcaaccg      1740
     tacgctagtt gagaaggtaa ggacgatgct gattgattcg aatatgccga agtacatgtg      1800
     gtgcgaggct gtgcttgctg gtacgtatat cttgaatcgt tgccctacta cctctctctc      1860
     tgacaaccgt acacctgcgg agtattggac cggtgttaaa ccggatctct cgaaattgcg      1920
     aatttttgga tgcaaggctt tcgcatgggt gccaggccaa cttagaaaga agctggacaa      1980
     caagagtcga gaggcggtga tggtcggata tgctcctaat ggctaccgcc tttgggacag      2040
     atcgtcaaga aaaatcttca tagctcgtga catcaaattt gacgagaaat caatgccgta      2100
     tgcagttgaa gacagtgaag atttgaaggt tccgttgatg attccgacag tgtacccagc      2160
     cgagaaagat gatcaggaag tcgaaccgga agcgatagtt tcttttccaa gcgatgatga      2220
     agattcggtt gacctggagg aacttcctga agaacagctt gaaaatcctg gggcgctccc      2280
     ttcacaaaca agaggtgatg actgtttaga gtctaacact aggcgcagtg aacgggagcg      2340
     caagcttcca ggtaagttct ttgacttttt gactgggttc agagcaacgt ctgctgggaa      2400
     tctttcacca tcctcagatc ccccggaatc gtttgatgaa atcaaagcgc gagatgaccg      2460
     acagctgtgg ctggatgcag tggacgaaga gcttaaatcc atggcagcca acaaggtatg      2520
     gaaactggtt ccatgcccag ccggtgtgaa accccttcag gcgaagtggg tattccgtaa      2580
     caaggaggat gagaacggca accccgtgcg ccgtaaagcg agactggtcg tcaagggttt      2640
     tctacagaaa cctggcctgg actacaacga cacctatgca cctgttgcga agctagcgac      2700
     aattcggatc gtgctggctg ttggtgttca aaaagggttt catttccacc aaatggatgt      2760
     aaagacggcg tttcttcacg gagaacttca agaagaaata tacatggcgg ttccagatgg      2820
     tttgccagcg cgaccaggca aggtatgccg tctgatgaaa tcgttatacg gactgaagca      2880
     atcccctaga tgttggaacg agaaattcaa ccaagcgctc ctgaaattag gctttgttcg      2940
     ttccaagcac gattattgcc tatacacccg taccgacgag aggggggaag atgccgtgtt      3000
     cgtcgtactg tatgttgatg atctcctcat tgcgggcatg aaattgtcga cgatcttgaa      3060
     gctgaagcgc gaactgtccc ggatgttcgc catgactgac tgtggggagc taaaccattt      3120
     cctcggcatg aagatacggt acgatcggtc aagcggaaag atgacgttat ctcaagaaaa      3180
     tagtctggag aaaatcttcc agaagttcgg catgtcgcag tgcaacccta caaggacccc      3240
     gatggagaag ggtttgcagc tcgatcgtaa agtaatcgaa gcctttgacg aaccgtaccg      3300
     tgaacttttg gggagcctga tgtacgtgat ggtgtccacg cggtcggaca tctgttttcc      3360
     agtcgggtac cttgggaggt tccaatccca acccggacag cagcactgga ccgcactcaa      3420
     acgagtggtg cgttacctaa aaggaacgat ggaccattgc cttacgtttt accgagatga      3480
     ccgagcgcta cccctgatcg gattcgcgga tgcagactgg gctaccgaca cagaggaccg      3540
     gaagtcagtt agcggattcg ttttccaagt gtatggatcg acggttgtat ggtcaagcaa      3600
     gaagcagacg acggtggcca cttcgtcaag tgaagcagag tatgtggcat tgagtgctgc      3660
     agcatcggaa gcagtatggc tggccggaat cctcggtgat ttaggtgaga agacgatcga      3720
     accagtgacc atattcgaag acaaccgtgg atgtatcggt atggccaaga acgtggagag      3780
     caagagagtg aagcatatag acatcaagca tcattttctg cgagatcttg ttgctgctgg      3840
     gaagttgcta gtcgaaccga ttgcgagcgt aaaccaacta gctgacttct tcacaaaggc      3900
     cttggacgtt ggacgatttg aggaacttcg gaagaagcta ggagtgtccc aacgagaggg      3960
     gg                                                                     3962
//
ID   Copia-173_AA-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.08, Created)
DT   17-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-173_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-177
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-177
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1489-1489 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 177 BP; 40 A; 52 C; 32 G; 53 T; 0 other;
     tgtaaacgta gtagccgttg gtttactgac gtgagcgccc gcacaatttt ttcaacccca        60
     ttccacatca agacaccgaa gtgtacagac cgtttcctgt taataaacct tgttcgttat       120
     tgttagaacc cgtgtcctgg tcatttctcc cagccctgtc cgcctcagat tccatca          177
//
ID   Copia-174_AA-I repbase;    DNA;    INV; 4128 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-174_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4128
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1445-1445 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4128 BP; 1120 A; 872 C; 1199 G; 935 T; 2 other;
     ggtgatgtgc ccagccggat cggaktkaaa aagtgttgga aaacatttgg cgtcgaagag        60
     ccattttgtt tggtgttccg cctcgtgggc ccctccgaga gtgaggaaga ggtgaagaat       120
     aagaagagca tattcgcgac cggcccggtg tacgatcgtt gtgtgcgaaa gtaaacaaac       180
     tcgatcgggt cgaaaagtga actgtttcgt cggtgaaaat ggatccgcgg ttcgtgattg       240
     ccaaattgaa tggcacaaac tggcagacgt ggaaagtccg ccttgagaat ctgttatccc       300
     gtgaagatgt gtggcacacg attgccgaag acattccgga agagaaaagt gaaaagtgga       360
     aaacggccga ccgccgtgca aaagctacgc ttatgttgat gctggaagac aaccagctgc       420
     cactggtgaa gaagtgtgtg catgcgcgtg acgcatacga agcattgaaa gtgtaccacc       480
     agaaaacgac gcgatctgtt cgtgtatccc tcttaaagaa actgtgcgcg ataaatatgt       540
     ccgaacgtgg tgatctcgag cagcatctgc tcgaagtaga tgaacttttc gaacggctcg       600
     attccgccgg taccgaactc gacaaagata caaaaatttg tatgcttttg cgaagccttc       660
     ctccgtcttt cgacaatctt gttacggctc ttgacagtcg ttctgatgat gacatttcga       720
     tggatgtcgt caaatccagg ctgatggatg agtaccatcg gcggctggag agggaaggtg       780
     ggggtgttac gaaaagtgag aaagcgatgc gttccgcgga atacggacaa agtgagaaga       840
     aagtttgcca cttctgtaag aagcctggcc atattcgacg caactgccga aagtttttgt       900
     cgtcgaagaa agaaagtgaa agtgcgccga aatccagaaa agaagaaagt gctaaggcga       960
     aggctgctca cagtgacaac aaaggagttg cttttacggt tggaagtgag tcggcttgct      1020
     ggattatcga cagcggagcc agcgcccata tgacgaacga ccgttcgttc ttcacggtgc      1080
     tgaaggagtt cgccggtggc tggataactc tggcagacgg caagaagaca cagatcaaag      1140
     gtgaaggtag cggtgttctc tatggtgttg acggtgaagg ggatgccatg aagattgata      1200
     ttagtgaagt gaagtttgtc cctggtctgt cgaccaatct gatttcggtt tctaagctga      1260
     cgcagaagaa attcgaagtt tgtttcgacg aagatgagtg tcggattgtc gatccgaaag      1320
     gtgtcgttgt ggcgactgga tgtcgttgcg gcggcctata ccgtctgagg cttgctgaga      1380
     cttcgctcaa ggtaactacc agtcaacacg gagagaattg ccaacaccaa tggcatcgac      1440
     gtttgggcca ccgtgattgg gcggctgccg aacgtctagt gaaggagaac cttgcgacag      1500
     gtatgaaggt aagcgattgt ggtatgcgtg ttgtatgtga gtgttgtttg gaggggaaat      1560
     tgtcgcgacc cccctttcct gctattaccg aacgtaaatc gactggaatt ttagacatcg      1620
     tgcacaccga tctgtgtggt ccgatgaaga ccgccacccc aagcggtaac cgatatgtta      1680
     tgaacatcat cgatgattat agtcggttta cggtaacgta cctcctcaag aacaagtggg      1740
     aagccgctga atccatcaag gagtatgtgc gatgggtgca aactttgttc ggcaagaagc      1800
     cgaaagttat tcggtcagat ggaggaggag aatttgacaa caaagagctg cgaaatttct      1860
     atcgtgcgga aggcatcaaa ccacaattta ccacccccta cacgccacaa cagaatggag      1920
     tggccgagcg caaaaacagg tcgctcaccg agatggctac ctgtatgctc ctcgacgctg      1980
     gactcgagaa gcgattctgg ggtgaagcga cgcttaccgc aacctacctt caaaaccgat      2040
     taccgtcaag atctgttccg aagacaccat acgagctgtg gtggggtcgt aagccgcaac      2100
     ttggccacct gaaagtgttt ggaagcgagg cttatgtaca cattccagag gtcaaacgag      2160
     gaaaaatgga tgggaaggcg cgcaagctta ctttcgtagg ctattctatg gaacataagg      2220
     gttaccgttt cgtggaccct gcgacggatc aagtaacagt gagtcgagat gcccggttca      2280
     tcgaactcgg caacggatcg aattctatgg attatcctgc ttcggctccg gatgaaactg      2340
     ttcctgagaa gaatgaagaa gacgagatca agctgctgcc tcttgtggag aagaaagaag      2400
     aaagtgaagt cgatgaagat tctggaagcg acgatttcgt ggatgcgtct aatcgtgaag      2460
     tggttcctga gccaagccgt cgatcggatc ggctgaatcg tggagcaatc cccaagcgtt      2520
     acgatgattt tgttctggat tattcagttg gaatagcggc atgtgcaatg gaagaaccat      2580
     caaatttccg ggaagcaatg cagaagccgg aatggaagag cgcaatggag gacgagcttg      2640
     cttcgcatca acgcctaagg acctgggagc tagttccacc acccaaggga tgtaaagctg      2700
     tgggatcaag gtgggtgttc aaggtcaagc gtaacgagcg gaatgaagtt gtcaagttga      2760
     aagcccgaat cgttgctcag gggtacagcc agcaacaagg agtcgactac gatcaggtgt      2820
     tcgcaccggt tacacgccaa gctactttga gaacgtttct cgcggtggct tcaaagcaca      2880
     acatggtagt acgacacctt gacgtgaaga ccgcgtattt atacggatct ttggatgagg      2940
     aggttatgat gcgacagccc cctggattcg cagtacctgg caaggaggag tatgtctgta      3000
     gactcaagcg cagtatctac ggattgcggc agtcagcgcg ctgctggcac cggagactca      3060
     acgaagtgtt agcgaaactg gagttcaagc cctcagcagc cgatccatgc ttgtacatcc      3120
     gaagcgtggg tgaagggaaa gtctttctac ttgtttatgt cgatgacatg ctgattgggt      3180
     caacgaatga gcgagaagtg caacaactat tcgattctct gaaggaggag ttcgagctca      3240
     cgtcactcgg tgaagttcga cacttccttg gaatggagat acagcgagaa ggtggagtgt      3300
     atagcattcg actacagaag tacatcgaga agcttatcgc aaacttcggg atggagcagg      3360
     ccaagaaggc gaagtcaccc atggatcctg ggttcctgaa gctggttgaa cctggagaag      3420
     cgcttgagga tgcaacgaaa taccgaagcc ttgtaggtgg attactttat cttgctgtga      3480
     atgctcgacc ggacatagcg gcatctacag cgatccttgg ccgtaagttc agcgctccaa      3540
     gcgaagctga ctggacagcg gcgaaacgca tattgcgata tttgaaggca acggcagatt      3600
     acagtctacg actaggagga gaaccgaatc aagcgctgat tggatattca gattctgatt      3660
     gggccggaga cgttggaagt cgaaagtcga catccggcgc agtgttcatg tttggtggag      3720
     gagtagtatc atggtccagt cgacgtcaat catcagtcac gctctcgtca atggaggcgg      3780
     agtacgtggc gctcagcgaa gcctgccagg aggtcgtatg gttgaggcag ctgctacgtg      3840
     attttggtga agaacagaag atcgctacag tgattaacga ggacaaccaa ggttgcctcg      3900
     catttgtgaa gacggagcgt tctagccggc gctcaaaaca tatagacact agggagaatt      3960
     tcgtgaaaaa cttgtgtgaa aagcaagaga tcagactggt ttattgctct actgatcaaa      4020
     tgattgcgga cgtcatgaca aagcccctag ggccgaagaa acatcaaatg ttttgtgaac      4080
     tgttgggact cagaagtgca agtgaaccgg tagtccattg aggaggag                   4128
//
ID   Copia-174_AA-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-174_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-289
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-289
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1490-1490 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 289 BP; 68 A; 80 C; 56 G; 84 T; 1 other;
     tgtggagaga aacaatgcac accttaccac atcaatatac tttggttgcc acactcgtcc        60
     gaaccctgtg tgtgctgccg atccctcgcg cagtgcawtc gaccgaagct gatcgaacag       120
     cgtcattcaa accgccatcg tagtgcgacc gacacgtgcg tttccttaat ctttatattt       180
     ctttggttaa ataaaagttc acgttaaagt aatcgcgagt gccttaattt actttttctc       240
     ccgaatccat tcgctgactt ttccgctgcg tagccgtgac tatccgtca                   289
//
ID   Copia-175_AA-I repbase;    DNA;    INV; 4081 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-175_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4081
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4081
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4081 BP; 1052 A; 918 C; 1239 G; 872 T; 0 other;
     ggttatgggc ccagcgctgg tcgcgacgga gtgaaaattt cggtgaaaaa gtggtctccc        60
     gtttagacag tttcggcggt gtcgagtact gtacccgtgc gtgcgacctg gattccgcca       120
     ccgggcgaag aatagtgttg ttgtttgcgc gaaaagtgtt gtgaagatgg tcgatgtgaa       180
     attctccgtt cccaaactga acggaacgaa ctggtccacc tggaagatca aagcgcgaat       240
     gctgctcgac cgcgatgatc tgtggagtgt ggtggaggac gatattccgt tagtgaaaac       300
     agtggcgtgg aaacgagacg atcgcaaggc gaaagcgaca ttagtgttac tgctagagga       360
     cagtcaactg tctttgataa agaactgtga gtatgcgcgt gaagtgtacg atgccctgaa       420
     ggcatatcac gaaaagacaa cgcgatcgct ccgtgtttcg ctcctgaaaa agttatgtgc       480
     cacgaatctt ccggaagccg gtgatctcga gaggcatctg ctggagatgg atgacctttt       540
     cgaccggttg gacgcagcgg gcacaaaatt ggaaaaggac gtgaaaattt gtatgctgct       600
     ccggagccta cccccgtcgt tcgatggtat cgttaccgcc ctcgactccc ggtccgatga       660
     tgacctaacg attgatacag tcaagtccaa actttcggac gaataccatc gccgtttgga       720
     gcgcgaaggt tcttccggaa agggggagaa ggcaatgtgg tcttccgaaa acaagcgggg       780
     caaggagagc agaacgtgtc acttctgcaa gaaggccggc cacttgaaaa ggaactgccg       840
     gaagttcctg gccgaaggga aaccgaatga caatccgtcg aagagtggtg ctagtggcaa       900
     tgcaaaggca aaagccgcta atgtagagca gaagtttgtc gccttcaaag cgggtagtga       960
     gaaaacgtcg ctgtggctga ttgatagtgg ggcaagcgcc catatgacat ccgatcgttc      1020
     ctttttcacg tcgctgcggg agtttgctgg tgggtggatc acactggcgg acgggaagaa      1080
     gacccaaata ttgggtgaag gcagtggtgt catccgtggg gtcgatgacg aagaaaatga      1140
     agtgacgatt tcgatgagtg aggttaaata cgtgccggga ctggcctcca gcctgatttc      1200
     agtgacgaaa ttggcacaga agaacatgag tgtggtgttt gacagtgatg gctgccgtgt      1260
     tgtgagttcc agtggtaccg ttgtagcgac ggggtgtcgc tccggcggtg tgtactacct      1320
     gaagaccaaa gagtcggcgg cgatagcatc gggtcaacat cttccgaact gccagcacca      1380
     atggcataga cgccttggcc accgagattg ggcagcggtg gagcgaatta acaaggagca      1440
     cctggcaacc ggtgtgaaag tcgtagactg cggcttgaag atcgtttgtg aatgctgctt      1500
     ggagggcaag tcagcccgat tgccgtttcc gcctgttacg gagcggaagg cggcgcagat      1560
     cctcgacatc gtccacaccg acctctgtgg gccgatgaag aacgagacgc cgaatggtaa      1620
     caggtatgtg atgaacatta tagatgattt tagcagattc actgtgacct acctgctgaa      1680
     aagcaaaaag gaagccgctg actgtattaa ggagtacgtg aagtggaccg agacccagtt      1740
     caaccgcaag cccaaggtga tccgctctga tgggggcggc gaattcgata ataacgagct      1800
     ccgtcgattc tacaaacagg agggaatacg gccacaattc accacgccgt actcacccca      1860
     acaaaacggc atcgcggagc ggaagaaccg ggctctttcg gagatggcga cgtgcatgct      1920
     aattgatgcc ggcttggaga aaaggttttg gggagaggca atcctcacgg caacatacct      1980
     tcaaaacaga ttgccatcgc gttcgcttca gaagacacca tttgagctat ggtggggaag      2040
     aaagccagat ttgagtcaca tccgagtttt tgggagcgag gctttcgtgc acgtgccaga      2100
     tgtcaaaagg gaaaaactgg acagcaaggc ccgtaagctc aagttcgtgg ggtattgtat      2160
     ggaccaaaaa ggttatcggt tcctagttcc cggtaccgac aacatcgtcg tgagtcgtga      2220
     tgcccgtttt gtcgaactcg gcaatggctc ctcctccgtg gagttccgtt tggcggatac      2280
     ggacacaaat gaacagcggc tcaacgaagg agaaatcaag ctgattccat tcaaggatga      2340
     cggttccaaa gaagaagggg ctgttggcgg agaatcggat ccggaggagt tctacgattc      2400
     tcggaatttg gaggacgaac cggcgctgga tgtgcgacga tccggcagac aaaatcgagg      2460
     cgtagctcca cgctacttgc aagacttcga gctggatact gcaggagttg cggcgtgcgc      2520
     tcttgacgag ccagtagttt tcaaggaagc tgtgaagata cgggaatggc gtttggcgat      2580
     ggatgaagag ctggagtccc atcggcggaa tggaacgtgg gagctcgttc cgctacccaa      2640
     aggaaggaag actgtcggct ctagatgggt ctacaagata aagcgtaacg aacagaacga      2700
     ggtagtcaaa tacaaggccc gaattgtcgc acaaggacac acccaacgct acggagagga      2760
     ctttgaggaa gtcttcgcgc ccgtggcccg acacgcaaca ttgcgaacat ttttctcgat      2820
     tgcgtcgaag cggaagttga ttgtccgtca cctggacgtc aagacggcgt acctatacgg      2880
     cagcctcgac gaagaggttt ttatgcggca accaccgggg tacgtcaagc gaggacatga      2940
     agatctagta tgccgattga agcggagcat ctatgggctc cggcaatccg ctcgatgctg      3000
     gtgtaaaagg ctccaagacg tgttgctgaa ctgtggattc aagagatcga gtgcggaccc      3060
     atgcctgtat atcaaactgg tgggagaaat caaagtgttg ctcatcgttt atgtcgacga      3120
     cattctcctg gcgtcgtcat ctgaagggga actgaataaa tgcttcgaac accttaacgc      3180
     agagttcgag ctgacatccc taggacaacc gcgacacttt ctggggatgg agatcatcgt      3240
     gaaggaagga gtttaccatg tgcgtctaat gaactacgtc gacaagttaa ttgagcgaaa      3300
     cggaatgtct gaagcaaagg aggctagaac accaatggac attggatatg tgaaggcgga      3360
     agatacgagt gtaccactga aggatcctaa cgtgtaccgt agtctcgtcg gtggactgct      3420
     gtacctagcg gtcgtagcga ggccggatat tgctgttgcg gcggccatcc ttggtcgtaa      3480
     atttgcggag tctacggaga acgactggac cgcagccaag cgagtcttgc ggttcttaaa      3540
     ggggacgaag gagtggtacc tcaggctagg cggagaaccc gatcaggcgt tagttggcta      3600
     ttccgatgcc gactgggccg gcgacctggc caccagaaag tcaacgacag gatttgtgtt      3660
     tgtatacggt ggtggtgtag tttcctgggc cagccgtcgt caatcaagcg tcaccttgtc      3720
     atctatggag gccgagtact atgctctcag cgaggcctgc caagaaacga tatggcttcg      3780
     gcaactactc aacgagttcg gcgaaagaca gcaacaaccg tctgtggtta aggaagacaa      3840
     ccaaggttgt ctcgcctttg tgaaaacaga gaggagcaat agacgttcga agcatatcaa      3900
     cactcgggag catttcgtgc gggagttgtg tctcaaagga gaagtgttgt tggagtactg      3960
     ccccaccgat gaaatgttgg cagatatatt tacgaagccg ctcggcccac agaagcatca      4020
     ggactttcgt aagatgcttg ggcttggcgt cgagcagtga ggacaccgca ttgaggggga      4080
     g                                                                      4081
//
ID   Copia-175_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-175_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1491-1491 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 68 A; 67 C; 48 G; 81 T; 0 other;
     tgtggaatgg gagcactgct agttcctcac ctacattaat ctttccgtgt atctactacc        60
     actaacgcac ctgatgtgag tgcgtacctt gccaatgtat acttttgaca gctaacgact       120
     attatcgtaa aaacgtgttt tccgaccaga agcagagaat aaagttataa ttctaaaccg       180
     tattgttcgc gttgtttaac cgagttattc cgcgaccgaa atcctaatcc agcttcctct       240
     tgtccgcctg aactcttgcc gtca                                              264
//
ID   Copia-176_AA-I repbase;    DNA;    INV; 4133 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-176_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4133
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4133
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1446-1446 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4133 BP; 1128 A; 849 C; 1218 G; 938 T; 0 other;
     ggttattggc ccggtgtgat aagtgcgaag aaagattcgg tttcggttgt gccggaaagt        60
     atttggagag cgaattaaaa aagtgcgtgt tcggtgcgat cccggtagcg aaagaacttt       120
     ttcctcaaga tggcggagca gccacgattc tcgcttccga gactgaacaa ccagaattat       180
     caatcctgga agttcaagat cgagatgatg ctcatcagag atgagctatg gagtgtgatc       240
     gccgacccta aacctgagcc tgtgacggag gaatggtcca aggccgattt gaaagcccga       300
     gccacgattt gcttgtgcat cgaggatagc cagaccagca tcgtacgaaa ctgcaccagt       360
     gcaaaggatg catggaaagc tctaaaggat taccatgaca agggctcgga agtgtacctt       420
     ctaaaaagct gacacgattg gagctaggag aagacggcga tatggagcaa catctgcaga       480
     aattcaccga tctggttcag cgtattgcag atgccgggga agaaatcccg aagaagtggc       540
     aggtggcgat gctactgtgt tcgctccctg attcttacga cccactagcg acagcactcg       600
     agcagcggcc aagcgatgag ttgactctag atttagtcaa gtcaaaactc ctcgcggagt       660
     ctgagaagcg gagggaacga agtggatctg ctgctggcgg cggaggagca gtaaaagctt       720
     tgcgtacgga tattcgtaag catcgcggtg gttcgagtga tgacaaggaa acccgttcct       780
     gtttttactg caagaagact ggccacttga agcgaaactg tcgctcttgg aagaaagaag       840
     ttgctgatgg ttccgtgaag aagcaggatg gacctagtca agcgaagaaa cccgatgaag       900
     cgaaagcgaa gcaagtgagc gttaatgatg gacctgttgc ctggatggtc ggccacggcg       960
     agccgtcgtg gtggtttgtc gacagcggag cgtcccgtca tatgactggg gacaagaaat      1020
     tttttcgatc attgagtgaa acgaaaggca tcagcgtgat gttggcagat ggagagaagg      1080
     ccgacgcaac cggcattggc cacggtacga tcgttgggat gaacgatgcg aatgagcctg      1140
     tcgatatcat actacgtgat gtgctttgtg ttccaaagtt agccagtggc ttaatatcag      1200
     taagcacact tgctgccaag ggtttccagg tagtattttg cgacgatcgc tgtgaagttc      1260
     gagaccggca aggaaaggtc acagcagtgg cattgcggca cggcagcctg tacagattgt      1320
     gtacccctga gcaagcgctg ctgagtgtcc aatctcctca taccgttaac tgtcagcata      1380
     cctggcatcg ccggctaggt catcgtgatt tcgatgcagt acgtgccatt ccggcaaatg      1440
     aacatgcgga gggaatgaag ttggtggatt gtggtgataa atcgatttgc caatgttgtt      1500
     tggcggggaa aatgacccgt gttccgttcc caaaacaagt cgaccgcggc gctagagaaa      1560
     agctggatct agtgcatacc gatctcagtg gaccgatggt gagtacccct agcgggaata      1620
     agtatttttt atctttgatc gacgactaca cgcggatgac gttcgtgtat ctgctgcggt      1680
     ctaaaaccga agccacggag aagatcaagc agtttgtgta tttttgcaag acgcagattg      1740
     gaaaaacccc gcgtattttg caatcggatg gaggtggtga gtacaccgga aatgacctgc      1800
     agtctttcct tcgagaagag ggaattgtga gtcaattcac ggctccttat tccccgcaac      1860
     aaaacggggt ggcggagaga aaaaaccgcc acttaaagga gatgacaatg tgtatgctat      1920
     tggacgcggg cctagatcag cgatactggg gtgaagcggt tttaacggcg acctacatcc      1980
     aaaaccgttt gccgtccaaa tccatcggca tgagtccgtt cgagcgttgg tacgacaaga      2040
     agccgtcgtt ggagcacttc agaatcttcg ggtgcgaggc gtgggtgcag attcccgcgc      2100
     agaaaaggaa gaaaatggaa gttaagtccc gtaaaatggt gtttgttggc tactcgaacc      2160
     agcataaggc gtatcgtttt cttgatacgg gtagtgaccg tattacaatc agtcgtgatg      2220
     tgaaatttgt ggaagactta cgtgtgaata taaacatgga cgaaaaagtg ttctgtgaaa      2280
     gtgacattga gcccgtggtt gaatccaccg tcgaacttga acccttgatg aagaacgacg      2340
     aagcacctga tcaagaaaac gatatgctgg agtatgaaag tgcggaagaa ttacattccg      2400
     aagaagagga acccgaagaa gaacttacag tgcgtggaag tggagtgatg ggagaagtgc      2460
     gaccagaaga gcgtcaaagg tcaacgcgaa atgttctgcc agttcgattc agggattacg      2520
     agatgggtct tgcggcggta gaacagagcg agcctactac gttcaaagaa gccgtcagag      2580
     gacctgaaaa ggaggattgg ctaaaagcta tgaaagagga ataccagtcc ttgattgcga      2640
     atggtacatg ggagttggtg gaccctccgg ctaatcgcaa cattataggc agtaagtggg      2700
     tatatcgcaa gaagctgaac gccgaaggtg aagttgagag attcaaagcc cgactcgtag      2760
     cgcaggggtt tactcagcgc ttcggatccg actatgagga gatattcgcc ccggttgcca      2820
     tgcagtcgac ccttcgcgtg ttgttggctg tagcaggaag aaagcaaatg gcagtcaaac      2880
     acctcgacgt gaaatcggct tacctttatg ggacacttag cgaggaaatt tatatgcggc      2940
     aaccaccggg gtttgttgcc aaggagaagg ttcaccaagt ttgcagattg cgtaagagca      3000
     tatatggcct taagcaggcg gccagggttt ggcatcaaac gataaccaac atcctgaagg      3060
     agctgggatt cagccagtgt gaaagcgatt cctgtttgta cagaaagcaa ctagccggtg      3120
     gagaatggat ttaccttttg ttgtacgtag atgatattct ggtggcttgt gcacaggagg      3180
     aggagatcac cagtatcgag agagcgttgc agaagaagat acagatcacg aggctgggcg      3240
     atatatcttg ttttctgggt attggagtac ggaaggacga gtgcgggttc tacagtctca      3300
     gccaagagag cttcatcaag cgacttgtca agcgttacgg aaaggaagga gcgaaggggt      3360
     ccaaatatcc catggacccg ggctatttca agctaacaaa agacgaaacg aagctcaacg      3420
     ataatcagga gttccatagc cttattggtt cgcttttgta tctttcaaca aacagccgtc      3480
     cggacattgc agcttgtgtt ggtattctga gccgcaagat cagtagccct tcggaggttg      3540
     attggatcga gagtcagagg attatacgct atttggcgta tacggtggat tacagactga      3600
     agttgggtaa tgcgcaggaa aactttgagc tagtcggcca ctgtgacgct gactgggcag      3660
     gagacaccag tgacagaaga tcatgtagcg gatatgtctt ccgtatcgga ggagctgcaa      3720
     tcagttgggc cagcaggaag cagagttgcg ttgctacgtc gacaatggag gcggaatacg      3780
     tagcgctctc ggaagctgct catgaagtcg tgtggttgcg taatcttttg aaggagctga      3840
     atgttgaaca agtcaagcca actgtactgt tcgaggacaa caagagctgc ctcgacttcg      3900
     tggcccttga tcaacacaag aagaggacca agcatataga tacacggtac cactacactc      3960
     gtgaactttc gtcatctgga gtaatcgagt tgaggtactg tccgtctgag gagatggtgg      4020
     cggatatctt gactaagcca ctgggtgcta ccaaggtcaa gagatttgcc acggagctgg      4080
     gtttggtcgg aggaccggat gtaggagtta aaggctgatt tcgcgaggag gag             4133
//
ID   Copia-176_AA-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-176_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-236
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-236
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1492-1492 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 236 BP; 52 A; 55 C; 46 G; 83 T; 0 other;
     tgttggccgc acagccctgt gaggatactg atgcgcgaat acaccctttt cacaagttga        60
     tcgtcatcct gactgcaaac actacgagtg acagattgat ttcttctttt gtatttcctt       120
     ttataagttg attccaaata aaacaattaa aacgtgattc tccggtgcgg tttacttttc       180
     gcgattttat ccgtttcctt ggcgttgttt gtgtctctgc cggtattccg ccaaca           236
//
ID   Copia-177_AA-I repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-177_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4117
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4117
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1447-1447 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4117 BP; 1137 A; 830 C; 1178 G; 971 T; 1 other;
     ggttgtggac ccagggtttc ggttaaagtg gacggatata aggaaaagtt gtttttccgg        60
     aggaatcgcg ttttttctcc gagtgtttca gtgactgtgc aacgtgagaa gtggaaagat       120
     ggccgacaac gtaaaagtta cgtttgccaa attgaacggc agtaattatg tgtcgtggaa       180
     atataggatg atgaccatgc tggaacgaga ggaagtttgg cacgtcatca cggatccgaa       240
     gccggaagaa gttgacgatg cgttccgcca gtggcagaag gatgatagga aggcccgcac       300
     caccatcgct ttattcgtgg aggacagcca gctccgtttt gttaaaaagg cgactacggc       360
     gagggaaatg tggcataacc tcaaaactta ccatgagaag gcgaccatcg gcaaccaggc       420
     cctgctgttg cagcagctat gtgcattgaa cctaagcgag ggtggcgatg tggagcggca       480
     cattgaagaa attgaatgcc tctacgaacg actggataat gccggggtgg aattgagcga       540
     gttgctgcga atcattatga tgttgcggag tttgcccccc tctttcgaca gtttcgtcac       600
     ttctttggaa aaccgcccgc aagaggattt gacgatggat ttggttgtgg ctcgaatgcg       660
     ggatgaatgt cagaagcggg cgagccagtc gggagccagc ggaaacaacg aacgagcttt       720
     gaaaacagaa gttaagccga aatacgataa acgaaagtgc ttcttctgta acatgccagg       780
     ccatatgcga aagaactgcc gaaagtttct ggctgcgaag aaaaatgaaa acaccgatca       840
     gtctgcgtct aaatccagcg agcagcaagc gaaacaggtt caggcggaac ggaaatcgaa       900
     gccgaatgca tcggcaagct cgagcacggt acagggtgct gtgtgcttca ttgccggagg       960
     agcgattgct ggtgcctgga cggtggatag tggctgcaca tgccacatga ccaacgaccg      1020
     tgagtttttt aacgagttta aaagagatgt cgtagtcgag gtgacacttg cagatggtac      1080
     cacaacgaag tcggctggat gtggcaacgg tgtgctgttt ggtgtgaatg gtgaaggaaa      1140
     tcgcattgca atcagactgg agaatgtctt gtttgtgccg tcgcttgagg gtggattaat      1200
     ttcagttcga aaactggctt taaaaggatt cgccgttgtg ttcaaggtga attgctgcga      1260
     gatccgaacg gccgatggag tggtgattgc ggtaggcgat acggttggca accagtatat      1320
     actcaaaacg gcagagcagt gcaaggcggt catgattgaa aatcacagcg atcggtgtca      1380
     acacacctgg cacaggagat ttggccatcg agatcccagt gttatgagcg ttatcaaatc      1440
     aaaagatttg gccaatggat tggatattaa ggactgtggc cagcagcttg tgtgcgagtg      1500
     ttgtcttcaa ggaaagttgg cacggagtcc gtttccgcca atcgtagagc gtagttccaa      1560
     gcagcctttg gatttaatcc atagcgatct gtgtgggccg atggaacact caacaccgag      1620
     cggcaataag tatctgatga ccgtaatcga tgattttagc agattttgtg tggtgtatct      1680
     cctcaaatct aaggctgagg cagcggctaa gatacgtgag tatgttcgct ggactgaaaa      1740
     cattttcggt cggaagcctc gggtcatcag gtcggatggc ggaggtgagt tcaccggaca      1800
     cgaattgttg agcttttata aggcggaagg tattgaaaca cagtttaccg ttccctactc      1860
     cccccaacag aatggggtag cggaacggaa aaatcgttct ctccaagaga tggccaattg      1920
     catgcttttg gacgccgatt taccaaaacg ctattggggt gaggcggtgc ttaccgcggc      1980
     atatattcaa aatcggctac cttcccgtgt cgttgaacgt accccatacg agatgtggac      2040
     cggaacgaaa ccagatctaa ctcggttccg ggtgttcgga tgtgatgcat acgtccacat      2100
     tccggacaac aaaaggaaga agttcgatcc gaaagctcag aagctagtat tcgttggcta      2160
     ctcggatcac cataaaggat tccgctttct tgatcgtgcg acggatcgag tcgtgattag      2220
     tcgcgatgct cgctttattg aattggctaa tggatcggag ctaacggaag atgaagatcg      2280
     gcagcaagtg gtcgttgatc aggaagaagc tgttgatggt gattgtgaag taacgatgag      2340
     tggtggtgaa aatgaaacgg aagtaattga agaagaagcc atcggtgaag aatcagtgta      2400
     tgaagatgct gacaatacgg acgaaagtga ctttctggga tttgaagaga atgaactaga      2460
     agaagaaaat ctcgaaaatg aacagtgctt gagaagatct gatcgacaaa ctcgtggagt      2520
     tctaccgaaa cattttgaga actatgtggt tggacttgtg aaacacaatg aagagccgga      2580
     cgatttccgg caggccttgg ccttacccga gtggaatagt gcgatgagag atgaactaaa      2640
     agctcatgaa cttaacgaga catgggaact cacgagtttg ccgattggga agaaagtgat      2700
     tggagccaaa tgggttttta aactcaaacg agacgaaacg ggaaaagtga tcaagcataa      2760
     ggctcgaatt gtagcccaag gctacacaca gcgtttcggt gtagatttca ccgatgtatt      2820
     tgctccggtg acgcggcaaa caactttgcg tgcgctacta gctgttgccg gaaagcaaaa      2880
     attaattctg aagcaatatg acgtcaaaac tgcttatttg aacgggaccg tggacgaaga      2940
     gctgtacatg cgacagccac cgggcttcga ggtaaatggg caggaggagc ttgtgtgcag      3000
     actcaagaag agtatatacg gtctgcgtca atcagcgagg tgctggaaca aagcgctgga      3060
     tggcgtgctt cgtgaccttc ggttccagca gtgcgaatca gatccatgtc tatatataag      3120
     acggagcgga tccatcaccg tttatcttct ggtgtatgta gatgacctta tcatcggatg      3180
     tatgaacgaa gacgaaatca atcgtgtata ctgtgcgcta cgtgacaagt tcgacataac      3240
     cgatcttggg ccagtcagat tttttctggg ttttgaaata gagcgagatg aaggttacta      3300
     ttcgttgcgg ctcacttcga acatcgaaca gttggtagac aagttcggaa tgcggaattc      3360
     agcaccggtc aagaccccaa tgaacccggg gtatgttacc gataattgtg acagcaagca      3420
     gttctcggat acaacacgtt atcgcagcct agttggagcc ttgctctatc tggctgtcaa      3480
     cgctcgtccg gatgtagcca tcagcgtagg actattggga aggaaggtga gtgatccaaa      3540
     tcaaagtgac tgggcagccg ctaaacggat tctccagtat ctaaacgcga cgaaacactg      3600
     gaagctgaaa tttggaccag ggctggcctg gaagttgatc ggctactccg attccgattg      3660
     ggccggtgac caacgaacaa ggaagtccac aactggaata gtatttttct ttggtggagg      3720
     acccattagc tggatcagca gaagtcagga gtgcgttgcg ctctcctcgt tagaagctga      3780
     gtataacgcg ctaaccgttg cgtgcaagga agccatttgg attagacgtt tgctgaagga      3840
     gttaagagag cctcaagatg aagcgacaac cctttttgag gataaccagg ggtgtatttg      3900
     tttcgcgaag gcagagcggt caagcggtcg agtgaagcac atcgaaacca aaggacattt      3960
     catccgggag ttatgtgaac gcaagatcat tgtactaack tactgcccta cagctgatat      4020
     ggtcgccgac gcgttgacga aacccttggg accaacgttg cataaccgat tcgtagaacg      4080
     gattgggctt gtgcctcagt agtaatttta ggaggag                               4117
//
ID   Copia-177_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-177_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-228
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1493-1493 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 228 BP; 57 A; 56 C; 40 G; 72 T; 3 other;
     tgtaggagta aaataaccac tcaggcgccc ctcgttccsa aaaacagagt aaacctttct        60
     ttatawtttc ttgatcattc gtgctgattg aactgkaaac aaaagcattg tttcaataaa       120
     agttattcct ttcctctgaa agcacgcgtc acgagtttct cttgcttttc cggtcgattt       180
     gtccttcttc gtataatccg cggtacgctg caaggtgctc tgcccaca                    228
//
ID   Copia-178_AA-I repbase;    DNA;    INV; 4241 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-178_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4241
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1448-1448 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4241 BP; 1112 A; 911 C; 1247 G; 971 T; 0 other;
     ggttattggc ccagaggcct ggtcgccacg gaattcgagg aagtgttccg gaaaagtttt        60
     ggctggccga gccgccattt ttgttccgcc gcgtgtgcga aaagtttgga agaagtatcg       120
     cgaagaccgc cgggcgccgg ctgtgagtgt gttggtgagc ggagtctgat ttcctcgccg       180
     ctgatcgttg aagaaaaggg gtagtgtgcg gcaccgtcaa gaaaagttta tttcggtttg       240
     ccaagtgata aacagtttgt gaaaatggtt gatgccaggt tctccgttcc gaaactgaat       300
     ggacagaact ggcagacctg gaaagtgcgc gttgaaatgc ttctgtgtcg cgaggatctg       360
     tggtgtgcca ttgaggacga tcctccagaa gaagaagctg ccgatgaata cgcgaagtgg       420
     aagaatgccg atcggaaggc taaagcgacg atagtgcttt tgttagaaga cagccagctc       480
     ccactggtga agaacagtgt caccgcgcgt gatgtgtaca attcgcttaa atcgtaccat       540
     cagaaaacga gccgatcagt gcgcgtctcg ctccttaaga aattatgtgc tatgaatctg       600
     ccggagcgtg gtgatttgga gcgacatttg tgtgatattg acgagttgtt cgatcggttg       660
     ggcgccgcgg gcaccgagct cgacaaggac actaagatct gtatgctctt gcgaagcttg       720
     ccgccgtcgt tcgacgcgat tgtctctgct ttagatggtc gttccgatga cgacatatcc       780
     atggatgtgg tcaaatcgaa actcatggat gagtacctcc ggcgtttgga gagggaaggc       840
     acctctgcca aaacggagaa agcgatgcgt tcctccgaag gtaagaaatt taacgaaacg       900
     agaacgtgtc atttttgcaa actgccgggc cacttgcgcc ggaactgcag gaagttcctc       960
     gcgtcgcaga gtgcaaatag ttcgaggaag gaggtggcaa aagcgaagac cgctaccaca      1020
     cagggtggcg aacgtgaagt tgccttcaca attcacgaag aaaccggtcc gtctgcctgg      1080
     atcatcgata gcggtgcgag tacgcacatg accggagaca agtcattctt cgttgatctc      1140
     cgggaatcag ctggaggatg gatcaccatg gcgaatggtg agaaaacgaa aatttgcggt      1200
     gaaggtagtg gtgtgatcga tagtgttgac gatgccggtg aaaacgtgaa gatcacaatg      1260
     gcagaagtga agtatgtgcc gggtctcgcg acaagcttga tttctgtggg gcgtttagcg      1320
     aagaagaacc tgaaagtggt ctttgaagaa gattcgtgca agatttgtga tccgaatgga      1380
     accgttgtgg cgaccggagt tcgcaccggc ggtttatatc ggctgcgcca tggccattca      1440
     tcgatgaatg cgacagctgg tcaacatctg gagaactgcc agcaccagtg gcatcgtcga      1500
     ttgggccacc gagactgggc ggcagctgag cgtttgctga aggaggagct tgcaacagga      1560
     atcaaggtaa gcaactgtgg gttgcgggtt gtttgcgagt gttgcctaga ggggaagtct      1620
     tctcgcgccc cctttcctgt ggtttctgaa cgaaaatcca cgcagatact cgacatcgtc      1680
     cacactgacc tttgtgggcc gatgaagaat gagagcacga gtggtagccg ctatgtcatg      1740
     catattattg atgactatag ccggttcacc gtgacatacc tattgaagac aaagtccgag      1800
     gcagcaggaa atattaaaga ctatgttcgc tgggtcgaga ctctaacagg tcgcaagccg      1860
     cgcgtagtta ggtcggatgg cggtggcgaa tttgataatg ccgagttgag acgattttac      1920
     aaggaagagg gcataaaacc acaatacact accgcatatt ccccacaatc caacggtgtt      1980
     gctgagcgga agaaccggtc gatcaccgag atggcgacat gcatgttgat cgacgcgaac      2040
     ctagagaaaa ggtactgggg tgaagcagta ctcactgcta cgtacctgca gaatcgactc      2100
     ccgtcaagga caatcgacaa gacgccctat gaactgtggt ggggccgcaa accagacctc      2160
     agcaatcttc gggtgtttgg tgctgaagct ttcgtgcata ttccggacac caagcgtagc      2220
     aaattggaaa gcaaggctcg aaaattgacc ttcgttggat attccatgga gcataaagga      2280
     taccgcttcc tcgatcgtga cacggatcgt atcattgtca gtcgagatgc ccggttcatt      2340
     gagctgggaa atggatcgtc tgctacagag catcctgttg ctgtttcgaa cccggaaaga      2400
     cgccgacatg ctgaggagat tgaagtgcta ttgaaggaag agaagcctaa gttcgaagaa      2460
     ggagcagtac gcgaagaaga tcctttgaga gtgctgccag gagaagaggc aagaaatgaa      2520
     gaaagtgatg agaatagcca atacgattcg atgagtgaca tttccgaaga aagagtgcaa      2580
     atcccagttc gtcagtcttc ccgccaaaac cgtggtgcaa ttccgaaaca tttgaatgac      2640
     tatgtgctag acttttctgt gggtattgct gcgtgtgcgg ttgaggagcc ggcgaacgtt      2700
     agtgaggcaa agcagaaacg tgagtggcga gatgcaatga acgatgaact tgagtcgcat      2760
     cgacgaaatg acacttggga acttgttgcg ttgcctgcgg gaaagaagac gataggctcc      2820
     aagtgggtgt ataaagtgaa gaaggacgaa ctgggacgag tagtgaaata caaggcaaga      2880
     atagtggcgc aaggatatgc gcagaagttc ggagtggact ttaatcaagt gtttgctcca      2940
     gtaacgcatc aagcgacgtt ccgtacattc ttggcagtgg ccgcgaagca gaacatgttt      3000
     gttcggcatg ttgacgtaaa gacggcctat ctcaacggtg agcttgatga agacctctac      3060
     atgcgccaac cacctggtta cgaggtgcag ggacaggagg agttagtatg ccatcttaaa      3120
     cgcagcatct acggcctgcg acaggccgca cgttgctgga ataagaagct gcaagaagtg      3180
     ttgtcgaagc ttggattccg ttcgtctaat gcagaccagt gtttgtttat gaaaagagca      3240
     ggcagtctga agattttcat tctcgtctac gttgacgaca tgctcgtggc ctcaacggat      3300
     gagaaggaaa ttcagcgtat catcggaagc ttgatgaacg agttcgagct gacaaacctt      3360
     gggaaggtac gtcacttcct tggtatggag gtgctacgag atagcgaagg cttcaagctg      3420
     cgtcttccag tttacattga ccaactgatt tcaaagtttg gtatggatca agcgaaacct      3480
     gcgacctccc cgatggatcc ggggtttctg aagactgtgg acacaagtga agaactgatc      3540
     gacgcgacca agtaccggag tttggcaggc ggaattctgt atttggctgt tagtgtccga      3600
     ccggacttgg ctgtcagtgc agcaattctc ggcagaaagt tcgccaaacc aagtgagcgt      3660
     gactggtcag cggctaagcg ggtacttcgt tacttgaagg cgacccgcaa cttttacctt      3720
     caccttggtg gaggcgaaga tcgagttctg tctggttaca cggattctga ctgggcagat      3780
     gacatcgaaa caaggcgatc aacctctgga ttcgtcttca tgtttggaga cggtgctatc      3840
     tcctgggcca gtcgaagaca atcatgcgtc acactttcct ctatggaggc tgagtatgtg      3900
     gcgctcagcg aagcctgcca agaggctctt tggctgagga agcttctacg agacttcgac      3960
     gaagagcaac ataatccaac cgtgctgcga gaggacaacc aaggttgtat ttcgttcgtc      4020
     acgactgaaa gagcgagtcg taggtcgaaa catatcgaca cgcgtgaaag attcgttgaa      4080
     gagctgtgta taacgaaaca gattattttg gagtattgcc cgactgattc tatggcggca      4140
     gacgccttaa cgaagccgct gggacctcaa aagctggaac gattccggca aattcttggg      4200
     gtcaaggagt agctgcaaaa ggacgttata ttgaggagga g                          4241
//
ID   Copia-178_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-178_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1494-1494 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 267 BP; 65 A; 74 C; 47 G; 81 T; 0 other;
     tgtggaaatc caataatacg accttttcac aacgtacgct acatcgccca cccctgaaag        60
     gtaaccgaga gctgatgaca gcaacataac tggtatgttc attatttttc attcgttcaa       120
     agtccgtttg cccatcgcgt gcattacatt tatttccccc gaataaaaac ccgtttgtaa       180
     gtgattccgc gagtgtaaaa gcttctttct gctgattccg aattcctggc gcttctcccg       240
     ttccactgct gcctgattct gccatca                                           267
//
ID   Copia-179_AA-I repbase;    DNA;    INV; 4148 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-179_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4148
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4148
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1449-1449 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4148 BP; 1099 A; 854 C; 1235 G; 960 T; 0 other;
     ggttatgggc gccaggttct cgggagtgta attagtgaag tgttccggtg gaaaactgtt        60
     tttccgggaa ggatccggtg ttggattccc gaagagtgtt ttgtggtgcg atcgcgtgta       120
     cgttagtgaa aagacaaaat ggcggatggc tggaaagcgt cgtttgccaa gcttggcaac       180
     ggaaattatg cctcttggaa gttccgtatg cggtctttgc tggaacgaga ggatttgtgg       240
     gacgcgattg aacagccgaa gccggaagag gtcgatgatg gttatgcgca gtggcggaaa       300
     agtgacgtga aggcgagagc aacaattgct ctgtttgttg aagacagcca actgcgattt       360
     gtgaaaaagt gtgaaacggc acatcaaatg tgggaaaatt tgcgagtgta tcatgagaag       420
     gccacaatcg gaaaccaggt tatgttgctg caacagttgt gctcgaaaaa tttgtgcgaa       480
     ggaggtaacg ttgaaaagca cctcgaagaa tttgagtgtt tgtacgagcg cctcgacaat       540
     gcgggagtgg aactaagcga actgttgaga ataataatga tgttgcgcag tctcccatca       600
     tcgtacagta gttttgtgac gtcgttggag aatcggccgc aggaagatct cacgatggat       660
     ctagtggtag ctcgattgcg cgacgagtac caaaagcgcg ccgggaatag ttcactcggt       720
     gataacagtg agagcgcgat gaaggtttcc gataaagcga gaagtgagag gaagtgtttc       780
     tattgttcga aaccagggca tttcaagaaa aattgccgaa agtttctcgc ggaaaagggt       840
     ggtgaaagtg gcagtcaacc gacgggttcg ggtcaagtcg ttaagcaaaa agcaaaacga       900
     gcccaagcgg aaagtgacgg tggcagtcgg tcgaagcatg tcgtagcgga tgacgttgtc       960
     tgtggcgcgg tgtgctttat ggccggtaac gttataccgg gagcgtggac gattgacagt      1020
     ggctgtacgt gccatatgac gaatgatcgc gcgtttttcg tggaattcaa gcacggtgtc      1080
     gttgtggatg tgactctcgc ggacggtacg aaaacgaaat caaccggcgc tggtagtggt      1140
     gtaatcatgg gcgtgaatgg taagggcgaa cgcgttgcaa ttactctcga aaacgtgtta      1200
     ttcgttccct cactcgaagg cggtttggta tcggtccgga aactcgcaac gaagggcctc      1260
     acagtggtgt ttgaggcaac aggctgttcg atcaaatcag cggatgactc tgtattggcc      1320
     gtcggtgagt tagttggctg ccagtacaag ttaaagctgg cggagcagtg tttagcggtg      1380
     gtgaagaacc atagcgtgaa ctgtcagcac acctggcatc ggcggatggg tcatcgtgac      1440
     atcaacgttg tgaatgcgat tgtggtgcaa ggattggccg acgggatcaa gttggcggat      1500
     tgcggagaaa ggatcgtgtg cgagtgctgc ttgaggggta agttggtccg aaagcccttt      1560
     ccacaggtac aagagcggaa gtccaagcgt ccgcttgata ttgtgcacac cgatctctgc      1620
     ggaccgatgg agcatccgac gcctagcggt aataaatact ttatcacact tatcgacgat      1680
     tttagtcggt tttgcgtggt gtttctattg aagtcgaagg acgaagctgc cgaaaagatt      1740
     atggagtacg ttcggtgggc ggagaacatc ttcaatagga agccttgtgt actgcgatca      1800
     gacggaggag gagaatacgt tggcgagaag ttgaagcaat tctgcagatc ggagggcata      1860
     cagcagcagt tctccactcc ctactctccg cagtcaaacg gagtagcgga gcgaaagaac      1920
     aggtcgcttc aagaaatggc cagctgtatg ttattagatg ccaaccttcc caaacgttat      1980
     tggggagaag cgactctcac ggccacgttt atccaaaacc gactcccatc cagagcagtg      2040
     gataagacgc ccttcgaatt gtggacgggc aacaaaccga acctgacgga tcttcggatc      2100
     tttggatgcg aagcgtatgt tcgagtgccg gacgccaagc gcaagaagtt tgatcctcgt      2160
     tcgaaaaagc ttgtgtttgt gggctattcc ggttgccaca agggataccg cttcctcgat      2220
     gtcgaaacca atcgcataat catcagccga gacgcagagt tcctggaact ggctaacggt      2280
     tccgagcaac aggaggaggc aactgcactt ccggaaatgc agcgtgagga gcgaagcgtt      2340
     ccagacgatc cagcgacgga gagtgaagaa gtggtagtgt ttgaacacag tgataatgaa      2400
     gaagcgcaag cagaagagcg tcattctgtg tacgaagatg cagaagacac tattgagagc      2460
     gactttcttg gtttcgaaga agaaattggt gaacaggaaa tgccaaatga aacagtgtta      2520
     aatcgccgaa gcaggcgaac gcggggtgtg ttaccaaaca ggtatgaaga ctttatcgtt      2580
     ggacaagtgt tacatggtga agaaccgaat gactttcgtg atgcgttgag tgtacctgtt      2640
     tggcaacgcg caatgcgtga agagattgaa gcgcacaaag tgaacagtac gtgggaactg      2700
     gtggatctac ccccgggcaa gaaagccatt ggtgcgaagt gggtattcaa gataaaacgg      2760
     gatgagacgg gtagcgtagt gaaacataaa gcccgtatcg ttgcccaagg atactcacag      2820
     tgttttggtg tggattttac ggaagtgtat gcgccagtta cgcgacaggc tacgttgcgt      2880
     gcactgctgg cggttgcagg gaagaagcag ttagctctga agcagtacga tgtgcgaacg      2940
     gcctacctca acggtactgt cgaagaagag ctgtatatgc agcagcctcc aggttttgcg      3000
     gttccaggtc acgagcaaaa ggtatgtaaa ctccataaaa gtatatacgg gttacgccaa      3060
     tctgccagat gctggaacaa agcattacac gccgtactcc tcgaattgaa gtttaagcca      3120
     agcaccgcag atccatgtct ctacattcga tacgagaagc cgacagtcat cattttggtc      3180
     tacgtagacg acttgttgat aggtagcgca actgaatccg agataaacaa agtttacgag      3240
     agtctccgtg agaaattcga tgttacttcg ctcggctttg tacgacattt tttgggatac      3300
     gagattggca aagagggaag cttctacact ttaaggctgt cagcgtacat tgacaccttg      3360
     ctcgacaagt tcaacatgga gaactgtcgc ccctccaaga ccccgatgga tcctgggtac      3420
     actttggcta acgaagacag taagcgattc gatgatccga cgcagtaccg aagcctcgta      3480
     ggtgcgttgt tatacctggc cgtcaacgct cggcccgacc tatcgttgag cgtcggattg      3540
     cttgggagaa aagtgagtga gcctaccaat atggattggt ctgcggctaa acgcgtgctg      3600
     cagtatttaa gaacgacaag agattggcga ttgcgatttg gaccaggtga aggatggtgt      3660
     cttagaggat tctccgattc tgactgggcc ggagatcgcc ggaccagaag gtcaacatct      3720
     gggttcatct ttttctatgg gagcggtcca atcagctggg tcagtaaagg ccaaagttct      3780
     gtggctcttt cgtcacttga ggccgagtat aatgctcttt cgctgacttg ccaagaaacc      3840
     gtttggctca gacggctgtt taccgagttg ggagaacccg aaggtaaagc gaccgtcgtc      3900
     ttcgaagata atcaggggtg tctcagcttt gcgacgtcgg agaggaccag cggtcgtgtg      3960
     aagcatatcg acacgaagag acactacgta cgagaactgg ctgaacaaga agtaatcaag      4020
     ctggtgtatt gcccgaccac tgaaatggtc gccgatgcac tgactaaacc attgggacct      4080
     acaggaatgc agaagttcat cgatcaagtt ggattgaagc cttagactcg gtgttcatcc      4140
     aggaggag                                                               4148
//
ID   Copia-179_AA-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-179_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-239
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-239
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1495-1495 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 239 BP; 57 A; 55 C; 43 G; 84 T; 0 other;
     tgatggagaa ggatgaccac ctcattatta tataccttgc agaagagttt gaattacctc        60
     atgtattttt atgcaccttg cgtgcagttg tcatttcatt gttttaacct aacaaacatc       120
     gtcacaagta aactcgattc actagagatc ggccgcgtta tttctttcag ttgtccgaaa       180
     tactttacgg tccgttttta ctccggttct gcgcatctgc tggtcgttcc aatccttca        239
//
ID   Copia-17_AA-I repbase;    DNA;    INV; 4065 BP.
XX
AC   .
XX
DT   21-FEB-2012 (Rel. 17.12, Created)
DT   27-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4065
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2588-2588 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1407-1940] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..4055
FT                 /product="Copia-17_AA-I_1p"
FT                 /translation="MAPPTGASSGSQAGGGNGSRPEAGSVRVTTGSVAMPA
FT                 IEKLKGRENYSTWAFAMRMILIREGSWCAIEPAEGEVVAADVKMRALATIC
FT                 LSLESYNYSLVQDAADAAEAWRKLGTAFQDTGLTRKIGLLRKLTSIRLVSS
FT                 SSVEEYVNELMSTTHKLASIGFKVDDSWLVALLLMGLPEHYEPMIMGLEAS
FT                 GANLTSDAVKAKILQDVKFERGPTNSNDEGALYTRGMNSTKFKGQAKKKPE
FT                 KTCFNCGKPGHFASKCPDKLVSKTKSKSSGLCSIFAIGDVQADAWYFDSGA
FT                 TCHMARPNQVFMDETALQHAVGTANNGSMEAMSRGTVALQIPDGTIDVHGV
FT                 LKIPNLATNLLSVSSICKRGHTMKFTADKCEVLNEDGELVVSGKEEGGLYR
FT                 LNQSERTFLANGIQLWHRRMGHLNDSSLKQLKNVSDGVDFQGEKVKDCTVC
FT                 LEGKQSRRPFPKSETSASELLELVHSDLCGPVEIPSMGGSRYFVTFLDDAS
FT                 KRVAVYFLKAKSEALAAFKLFRAKAERQTGKKLKILRTDNGREYMNDEFRK
FT                 TLEKDGIRHQRSCPYTPEQNGTAERMNRTLVEKARCLLNDARMQKEFWAEA
FT                 ISTAAYLVNRSPARSIGNKTPEELWTGKRPDLRHLKVFGTSVMVHVPKVKR
FT                 RKFDPKAVKGVFVGYCEDTKGFRVYLPESHKFEISRDVEAVNEDGQVPRTE
FT                 SPQEVRPVQFMELLTEETIVPVECPDVNANNSDDEEEGAAINNTLETSGDD
FT                 FEDACSDHALPPQQLRPVEESQQGLRRSGRERICPGKYDDFVTYGTFSGEV
FT                 IPPQPSAPSMLVEDVPQSYDEVMRRPDRDCWIAAMKQEMASLSENQTWTLS
FT                 NLPEGRKAIRNKWVFAIKRGPDGSLERYKARLVVKGCSQKPGVDYEEVYAP
FT                 VVRYSTIRYLMAVATKFDLDVDQMDVVTAFLQGELGDEQIFMVQPEGFAVP
FT                 NGKVCKLNKALYGLKQSSRVWNAKLDEVLREFGLQRSRVDTCLYWMLDGEK
FT                 MLFVTIYVDDLLIFTNDRRLKKRLKDFLMQRFKMKDLGEATHCLGIRIQRD
FT                 RREGKLSLDQQAYIEEIVRRFGMTNANPVAAPADPSGRLEKSMAPKTEREK
FT                 MEMRDVPYKEAVGCLSFVAQTTRPDIAFAVNAVSQFSSNPGRQHWEAVKRI
FT                 IRYLKGTATKKLQYKRDENGQLVGYSDADWGGDPDSRRSTTGYVFTMQGAA
FT                 IAWNVKKQPTVALSSCEAEYMALSRSIQEAMWWSNLRSEFTDVGPVPMFCD
FT                 NQSAISIAGNGSYNPRTKHVSIRYHFVHESLENGVVKLGYTPTSSQPADGF
FT                 TKPLATPNQQKFCHFIGVAD"
XX
SQ   Sequence 4065 BP; 1079 A; 916 C; 1247 G; 823 T; 0 other;
     agctctgcta gaggttatgg gcccagccgg taaccggaag aagatttcaa aaattcaaga        60
     tggcaccacc aacaggagca agttccggat ctcaagctgg cggcggaaac ggcagtcgac       120
     ccgaagcagg aagcgttcga gttacgacgg ggtccgtggc gatgccggcc atagagaagt       180
     tgaagggacg cgaaaattac tccacctggg cattcgcgat gcggatgata ttgattcgag       240
     agggaagctg gtgtgccatc gaaccggcgg aaggtgaagt tgtagctgct gatgtcaaga       300
     tgcgtgcgct ggcgacaatc tgtctcagtc tggagagcta taattatagc ctcgtccagg       360
     acgcggcgga tgcagcggaa gcatggagga aactcggtac agcatttcaa gacaccgggt       420
     tgacacggaa aatcggccta ctccggaagt tgacgtccat ccggttggtg agtagctcaa       480
     gcgtggagga atacgtcaac gagctgatga gcaccaccca caagcttgct tcgattgggt       540
     tcaaggtgga cgactcgtgg ctggtggcgt tgctgctgat ggggctacca gaacattacg       600
     agcccatgat tatgggactg gaggcctccg gagcaaatct gacctcggat gcggtgaaag       660
     cgaaaatcct tcaagatgtg aagttcgaga ggggaccaac gaacagcaac gatgaaggtg       720
     cactgtacac gcgaggcatg aattcgacca aattcaaggg gcaagccaag aagaaacccg       780
     agaagacgtg cttcaactgt ggcaagccag gccattttgc gtcgaaatgt ccggacaagt       840
     tggtcagcaa gacgaaatcg aagtcgagcg ggctctgcag tatttttgcg atcggcgatg       900
     ttcaagcaga cgcctggtac tttgattcag gagcgacgtg tcacatggcc agaccgaacc       960
     aggttttcat ggacgaaaca gcactgcagc acgcggtggg gaccgcgaac aatggcagca      1020
     tggaggccat gtctagagga acggttgcgt tgcagattcc ggatggcacg atcgatgttc      1080
     acggagtgct gaaaattccc aatttggcaa ctaacctgtt gtcggtaagt tcgatctgca      1140
     agagaggcca taccatgaaa ttcactgcgg acaaatgtga agtgctgaat gaggacggtg      1200
     agctggtcgt ttccggcaag gaagaaggcg gcctgtaccg tttgaatcag tcggagcgaa      1260
     cgtttctggc gaatggaatt cagttgtggc atcggaggat gggccacctg aacgattcaa      1320
     gtctgaagca gctcaagaat gtgtccgatg gcgtggattt tcaaggcgag aaggtgaagg      1380
     attgcacggt gtgtctggaa gggaaacaat cacgaagacc atttcccaag agcgaaacca      1440
     gcgcatcaga actgctagag ctggtgcatt ccgatctctg cggaccagtg gagattcctt      1500
     ccatgggtgg cagtcgatat tttgtgacgt ttctcgatga cgcaagcaag agagtggccg      1560
     tttacttcct gaaggcaaaa agtgaagccc tggcggcgtt caagttgttt cgagcgaagg      1620
     cggagcggca aacaggtaaa aagctaaaaa tcctcaggac agacaatggg cgtgagtaca      1680
     tgaacgacga attccggaag acactggaga aagatggcat ccgtcatcag aggtcgtgtc      1740
     catacactcc ggaacagaac ggcacggcag agaggatgaa tagaaccctt gtggagaagg      1800
     ctagatgtct gctgaacgat gcgcgcatgc agaaagaatt ctgggcggag gcaatttcga      1860
     cggcagcata cctggtgaac cgatcaccgg ccaggtccat tgggaacaag acaccggaag      1920
     aactgtggac tggcaagagg cccgatttgc ggcacctgaa ggttttcggt acgagtgtga      1980
     tggtccatgt tcccaaggta aagcgtagga agttcgatcc gaaggcggtg aagggcgttt      2040
     tcgtaggcta ttgcgaggac acgaagggat tccgggttta cctcccggag agccacaagt      2100
     tcgagatcag tcgtgacgtg gaagcggtta acgaggacgg gcaggttccc cgaaccgaga      2160
     gtcctcaaga ggttcgaccg gtgcaattca tggagctgtt aactgaagag accattgtgc      2220
     ccgttgaatg tccagatgtg aacgccaaca attccgatga tgaggaggaa ggtgcagcaa      2280
     tcaacaacac gctggagacg tctggcgatg attttgaaga cgcctgcagc gaccacgcgc      2340
     tcccaccgca acaattaaga ccagttgaag aaagtcaaca agggttgagg cgcagcggtc      2400
     gggagcgcat ttgtccaggc aagtatgatg attttgtaac ttacggtacg ttttctggcg      2460
     aagttattcc cccccagcca tctgctccat cgatgcttgt ggaggacgtt ccacagagct      2520
     acgacgaggt catgcggcga cctgatcgtg attgctggat cgcggcgatg aagcaagaga      2580
     tggcgtcatt gagcgaaaac cagacctgga cgttatcgaa tctgccagag ggacgcaaag      2640
     ccatccgaaa caagtgggtt tttgctatca agcgaggacc tgatggaagc ctggagcgat      2700
     ataaagcgcg gcttgtcgtg aaggggtgtt cccagaagcc tggagtggac tacgaggaag      2760
     tctacgcccc cgtagtacgc tattcgacca ttcggtacct gatggcggtg gcaacgaagt      2820
     tcgacttgga tgtggaccag atggacgtgg ttaccgcatt cttgcaaggc gagctgggtg      2880
     acgagcagat tttcatggtc cagcccgaag gattcgcggt tccaaatggc aaggtctgca      2940
     agctgaacaa ggctttatac ggtctgaagc aatcgagccg agtatggaat gcgaagctgg      3000
     acgaggtgct gcgagaattc ggcctgcaaa gatcgcgggt agacacctgc ctgtactgga      3060
     tgctggatgg agagaaaatg cttttcgtga cgatatacgt agacgacctg ttgatattca      3120
     caaacgaccg acgattgaag aagaggctaa aggatttttt gatgcagcga tttaaaatga      3180
     aggacctggg tgaggccaca cactgccttg gcattcggat ccagcgggat cgacgtgaag      3240
     gcaagctttc gttggaccaa caggcgtata ttgaggagat cgttcgtcgt tttggaatga      3300
     cgaatgcgaa tccggtagca gctccggcgg atccgagcgg tagactggaa aagtcgatgg      3360
     ccccgaagac tgaaagagag aaaatggaga tgagagatgt gccgtacaaa gaagcagtag      3420
     gatgtttgtc gttcgtggcc cagacaactc gacccgacat tgcgtttgct gtgaatgcgg      3480
     taagccaatt ttcatcgaac cctggcaggc agcattggga agctgttaag cgtatcatcc      3540
     gatacctgaa gggcacggct acgaagaaat tacagtacaa gagggacgag aatggacaac      3600
     tggtcggata tagcgatgcc gattggggag gagatccaga tagccgcaga tcgacaaccg      3660
     gctacgtctt tacgatgcag ggtgctgcca tagcctggaa tgtgaagaaa cagccgaccg      3720
     tagcactttc gtcatgcgag gcggagtata tggcgctctc ccggagcatt caagaagcca      3780
     tgtggtggag caatcttcgg tcggaattca ccgacgttgg accggttccg atgttctgcg      3840
     acaaccagtc agcaatcagc atcgcaggca acggatccta taatcccagg acgaagcatg      3900
     ttagcatccg ctatcatttc gtgcacgaga gtttggagaa cggcgtggtc aaacttggct      3960
     acacgcccac ttcgagccaa ccggcagatg gattcaccaa accgctggct acaccaaacc      4020
     agcagaagtt ttgccatttt ataggcgtcg cagattaggg aggag                      4065
//
ID   Copia-17_AA-LTR repbase;    DNA;    INV; 143 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   27-NOV-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_AA_;
KW   Copia-17_AA-I; Copia-17_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-143
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 945-945 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 143 BP; 44 A; 33 C; 20 G; 46 T; 0 other;
     tgatgtgtag taacccgcga cttatgttag ctacgcaatc agatccttag ctacgccatt        60
     aaccttagaa acctaagctt gttatttgaa ataaatattc attagtcttc caaccttcga       120
     accagaagca cctattttat tca                                               143
//
ID   Copia-17_CQ-I repbase;    DNA;    INV; 4229 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_CQ_;
KW   Copia-17_CQ-LTR; Copia-17_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4229
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 349-349 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1592-2119] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..4216
FT                 /product="Copia-17_CQ-I_1p"
FT                 /translation="MAAWLEKDGEARHAIGMAVGNDQLVHICRKKTAKEMW
FT                 DTLLGIHEVESMNTMMTVMRKMCSMKLPEDGNLPEHLKQLTAMHNRLEVAD
FT                 EGLKPRQFVAVILSSLPMSYGTLINVIEGYPREQITVDFVKSKLRDEWRRR
FT                 QECQEFQNGPSDEKALKISAKSGSRAKPKAAELKKKKSGVCHFCQEEGHFI
FT                 RDCPVMAEKRKEVMKSDAKKGSAKVNLAAEVHSEKEVCLMATTACETNRWY
FT                 LDSGATSHMTSDRAVLSNWNPAKQPEICLADGTKIVCSGTGSGKLVSVDEG
FT                 GARVKVTLNDIIHVPSLAGNLLSVSKICDLGLKVLFDRDGFEILRGQEAVL
FT                 LGERHGGLYRLKQFVEKAMLAKPEHPQLCEHLWHRRLGHRDPDAISAIVRE
FT                 ELGFGLQMKKCDVQCVCGVCCEGKMSRLPFPKESLSKSQAVGDLVHSDLGG
FT                 PMEVATPAGNRYFMTMLDDFSGYTMVYLLKAKSEAESKIREYFNLVKNQFG
FT                 RPPRVLRTDGGGEYSGSSLKKFLAESGTIHQMTAPYSPQQNGKAERKNRYA
FT                 VEMVRCMLAESGLGKQYWGEAITAANYLQNRLPSSSVEKTPHELWYNKKPS
FT                 YSHIRIFGSEAFVHVPKEKRLKLDMKAEKMVFVGYAEGRKAYRFLDPDTNR
FT                 IVISRDAKFIEQDGVTELQRNRPEPAEKADAVEMVQLPSYSAGRNEGSTSR
FT                 EVQTEPVAEVDEPETTDTEEPEDTASEEQNESVYENASEGELSFHGFPLDE
FT                 IARRSLRPNLGVPPRRLIEEIFVAREEEMEPRTLKEALSCDDSSEWKRAML
FT                 EELKSHATNGTWDLVELPAGRKPVGCRWVYKRKRNAAGEILKHKARLVAQG
FT                 YCQKYGEDYDEVFAPVTKQTTLRALLAVASKKKLILKHFDVKTAYLYGKLE
FT                 EELYMKQPAGFEKKGAEKLVCRLRRSIYGLKQSARCWNHRLHAVLVGMEFV
FT                 QSGADPCLYTKDVDGERTYILVYVDDILVGSAAETNIQEIYGCLKKEFEMT
FT                 DLGDLNYFLGLEIHREDGKYSVSLEGYIERVAERFGLRDAKVAKTPMDEAF
FT                 VKVEPESVALQESTTYRSLVGALLYIAVCARPDIAVSTSLLGRRVASPTEA
FT                 DWTAAKRVVRYLKGTKHWRLHYGDTEAGLVAYSDADWAGDLKTRKSTSGMV
FT                 FLLAGGAISWASRLQNSVTLSSMESEFVALSEASQETVWLLHLLDDLGEAP
FT                 QKPVVVMEDNQSCIKFVGSERVTRRSKHIETRECYVKELCNDGVIELVYCP
FT                 TEDMLADLLTKPLGAVKMAKLSSLLGSKSGVGKR"
XX
SQ   Sequence 4229 BP; 1054 A; 1032 C; 1388 G; 755 T; 0 other;
     agaggttatg ggcaccagtg cagcgcggaa ttagtggaat cgcggataaa atcgtcgttt        60
     tttcgaagtg caaaagttgg tcgggaaagt tggagtcgcg tcgcgtgtga aaaagcaaaa       120
     tggcggacga caagatcgag aagttgaacg accagaactt cgaaatatgg aagttccgga       180
     tggagctcaa gctgacgaag gagaagctca tcaaggtcgt cctggagccg aaaccaagac       240
     tgaagccggt cgcaggtagc ggccaaacgg agcgacggga gaccagacgg atgctgcagc       300
     ggcgggggtt ccagcggtgt cggcagcaga gatggcggcc tggctcgaga aagacgggga       360
     ggcgcgtcat gcgatcggca tggccgtggg aaacgaccag ctggtccaca tctgccggaa       420
     gaagaccgcc aaggaaatgt gggacaccct gctcggcatc cacgaagttg agtccatgaa       480
     cacgatgatg acggtgatgc ggaagatgtg ttccatgaag ctgccggaag acggcaatct       540
     cccggaacac ctgaagcagc tgacggcgat gcacaaccga ttggaagtgg cggatgaggg       600
     gctaaagcct cgtcagtttg tggcggtgat tctttcgagt ctcccgatgt cctacggcac       660
     gttgatcaac gtcatcgagg ggtacccgag agaacaaatc acagtggatt tcgtgaagag       720
     caagttgcgc gacgagtggc gtcgccggca agagtgtcag gagttccaaa atggcccaag       780
     cgacgagaag gccctgaaga tcagtgctaa aagtggttcg cgtgcgaagc ctaaggcggc       840
     agaattgaag aagaagaaaa gtggtgtgtg tcatttctgc caagaagagg gccattttat       900
     tcgtgactgt ccagtgatgg ctgaaaagcg gaaggaagtg atgaaaagtg acgccaagaa       960
     gggcagtgcg aaagtgaatt tggcagcgga agtgcactcc gaaaaggagg tgtgcttgat      1020
     ggcgacgacg gcgtgcgaga cgaaccggtg gtacttggac tccggggcga cgtcgcacat      1080
     gacgagcgac cgggcggtgc tgagcaactg gaatccggcg aaacaaccgg aaatttgctt      1140
     ggcggacgga acgaagatag tgtgcagcgg taccggaagt ggaaagctcg tgtccgtcga      1200
     cgaaggtggt gctcgggtga aggtgacgct gaacgacatc atccacgtcc cgtcgctggc      1260
     aggaaacttg ctctcggtga gtaaaatttg cgatcttgga ctgaaagtgc tattcgaccg      1320
     agacgggttc gaaatcctgc ggggccaaga agcggttctg ctgggcgagc ggcacggcgg      1380
     gctctaccgc ttgaagcagt tcgtggagaa ggcgatgctt gcgaagccgg agcacccaca      1440
     actgtgcgaa catctgtggc accgacgatt ggggcaccgt gaccctgatg caatctctgc      1500
     aatcgtccga gaggagcttg gatttggcct gcaaatgaag aagtgcgatg ttcagtgtgt      1560
     ctgcggggtg tgctgcgagg gcaagatgag tcgcctaccg ttcccgaagg agtccctgag      1620
     caagtcgcaa gcagtcggag atctggtcca ctctgacctc ggaggcccca tggaagttgc      1680
     gacgccggca gggaaccgat acttcatgac gatgttggac gatttcagcg ggtacacaat      1740
     ggtctacctg ctgaaggcga agtcagaggc cgagtccaag atacgggagt acttcaactt      1800
     ggtgaagaac cagttcggac gtcctcccag agtccttcgc acagatggcg gcggcgagta      1860
     ttccggatcg tcgttgaaga agtttctggc tgaaagcggg acgatccacc agatgacggc      1920
     tccgtactct ccccagcaga acgggaaagc ggagcggaag aaccggtacg ctgtggagat      1980
     ggtgaggtgc atgctcgccg agtctggcct tggcaagcag tactggggcg aggcgataac      2040
     agctgcgaac tacctgcaga atcgcctacc ttcgtcgtcc gtcgagaaga ctccgcacga      2100
     gctgtggtac aacaagaagc catcgtacag ccacatccgg atcttcggct cggaggcatt      2160
     cgtgcacgtg ccgaaagaga agcgcctgaa actcgacatg aaggcggaga agatggtctt      2220
     cgtggggtac gctgaagggc ggaaggccta ccgtttcttg gaccccgaca ccaaccggat      2280
     cgtgatcagc agagacgcca agttcatcga acaggacggt gtcacggagt tgcagaggaa      2340
     tcggcccgaa ccggctgaaa aagccgacgc ggtcgagatg gtgcagctac catcgtatag      2400
     cgccgggcgg aacgaaggat ccacaagcag agaggtccag acggaaccgg tggctgaggt      2460
     cgatgagccg gagaccactg acaccgaaga accggaagac accgcaagtg aggaacagaa      2520
     cgagtcggtc tacgagaacg catccgaagg cgaactgtcc ttccacgggt ttccactgga      2580
     cgagatcgcg cggcggtcgc tgcgaccgaa ccttggagtc ccacccaggc ggctgatcga      2640
     agagatcttc gtcgctagag aggaggagat ggaaccgaga acgttgaagg aagcgctgag      2700
     ctgtgacgac agttcagagt ggaagcgagc tatgttggag gagctcaaat cacacgcgac      2760
     gaacggtacc tgggacttgg tggaactacc tgcaggccgc aaaccagtcg gctgtcggtg      2820
     ggtctacaag cggaagcgaa acgcagccgg agagattctc aagcacaaag cgcgcctggt      2880
     ggcacagggg tactgccaga agtacggcga ggattacgac gaagtctttg cccctgtaac      2940
     gaagcagacc acgctccgcg cgttgctggc cgtcgcaagc aagaagaagc tgatcctcaa      3000
     gcacttcgac gtgaagacgg cttacctgta cggcaaactc gaggaggagc tgtacatgaa      3060
     gcaaccggcc ggtttcgaga agaaaggagc agagaagctg gtgtgcagac tcaggaggag      3120
     catctacggg ctgaagcagt ccgcccggtg ctggaaccac cgactgcacg ccgtcctggt      3180
     tggaatggag ttcgtccaaa gtggtgcaga tccctgtctg tacacaaagg acgtcgacgg      3240
     cgaacggacg tacatcttgg tgtatgttga cgatatcctc gtcggcagtg cggcggagac      3300
     gaacatccaa gaaatctacg gctgcctgaa gaaggagttc gagatgacgg atctcggaga      3360
     cctgaactac tttctgggtc tggagattca ccgagaggac ggcaagtaca gtgtatcgct      3420
     ggaggggtac atcgaacgag tggccgaacg ctttggactt cgcgacgcga aggtcgccaa      3480
     gactccgatg gatgaagcgt tcgtcaaggt ggaacccgaa agtgtcgcac tgcaagaatc      3540
     gaccacgtac aggagtctcg ttggagcact tttgtacatc gcagtgtgtg caagaccgga      3600
     catcgcggtg agtacatcac tgcttggtcg ccgagtggcc tcgccaaccg aggcagactg      3660
     gacagccgcg aagcgcgtcg tacgctactt gaaggggaca aagcactggc ggctgcacta      3720
     cggcgacact gaagctggtc tggtcgcgta ttctgatgcc gactgggccg gagacctgaa      3780
     gacacgaaag tccacgtcag gaatggtgtt cttgctagct gggggcgcta tttcctgggc      3840
     aagccggttg cagaactctg taaccttgtc ttcgatggag tcggagttcg tggcgttgag      3900
     cgaagcgagc caagaaactg tttggctact acacctgctg gacgatcttg gcgaagctcc      3960
     ccagaaacct gttgtagtga tggaagacaa ccaaagctgc atcaagttcg tcggatcgga      4020
     acgtgtcacc cgacgctcaa agcacatcga gaccagagag tgctacgtga aggagctgtg      4080
     caacgacgga gtcatcgagt tggtctactg ccctaccgag gacatgctgg ccgacttact      4140
     caccaaaccg ctcggagcgg tcaagatggc caagttgtcg tcgctgctgg gttcgaaatc      4200
     cggtgtcggc aagcgttgag gaggagtat                                        4229
//
ID   Copia-17_CQ-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_CQ_;
KW   Copia-17_CQ-I; Copia-17_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 350-350 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 221 BP; 66 A; 59 C; 41 G; 55 T; 0 other;
     tggtaatcac accgtgtgcc gacccctcgg cctcagcagc gagatgacac taacacaatg        60
     acaacgatcg agcgagcgca cgcaaagcct gctgcgccat attgtttttc tcattcccaa       120
     acgaacgctc aaagtgtaaa gacgcgagaa atataatttt acctttgttt gctaaattaa       180
     aactaatttc gccttttatt ccacttggac gaaaagtccc a                           221
//
ID   Copia-17_SI-I repbase;    DNA;    INV; 4068 BP.
XX
AC   AEAQ01022875;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_SI_;
KW   Copia-17_SI-LTR; Copia-17_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4068
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022875; Positions    5584    1517.
XX
CC   Positions [1535-1987] - Integrase core
CC   'AAAAC' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..1987
FT                 /product="Copia-17_SI-I_2p"
FT                 /translation="MAQDNVKFNIPLLNGGNYVFWKTKVRAILTRDDLWDV
FT                 VNEPKPAQPDEAWKKRNNKAMATITLSVEDSQLIHFAHLDNAFDTWQAVLR
FT                 KYERSTFCSRLYLRRKLYSIHYRSGSMSNHIDAIMEVVGLLCGSGRPLENE
FT                 EIVAVLLVSLPESYSRLVTALEGRDEADLTVEYVTGKMLDEYQKRMESNES
FT                 SDKNSEVALQSAVANPSNYSRINKGEKDKRVVKRDNKETRTCFFCHKQGHV
FT                 KANCRFFKKSSQQRGSSAESGKETAEARSGIQDNQITFSMKEEARAANIGV
FT                 WYVDSGATSHMTNDRNFFTVLQDTNMKIFLADGSSVDVAGIGEGYLKCRTT
FT                 DKLIQTIELKNVLYIPRLDGGLISVLKIIEHGFRVIFEKNDCTIYQGRQVV
FT                 AKAENSGNMFRLKTIGLEMIARIANVETCIHQWHRRLGHRDLKAIKPLSKE
FT                 GLATGIKITACSNEIICEHCIKGKLAQTKFPKSKRREKEPMKLIHSDLCGP
FT                 MQTATPNGNKYFLTLIDDYSRFTVVCLLKTKDEVSNVIKEYITMMLTRFGR
FT                 KPIALRTDNGREYVTSELTNFLRKEGIQHQLTVAYTPQQNGVAERKNRSLT
FT                 ESAKCMLLDADLNNRFWGEAVLTAAYLQNRIVS"
FT   CDS           2683..3891
FT                 /product="Copia-17_SI-I_1p"
FT                 /translation="MMNPTYKAQLVARGFSQIYGKDYDQAFSPVVKHETIR
FT                 ILLLIAAQKKLHVRHLDVKSAYLNGELEEEIFMDQPQGFQKRGQEYKVLKL
FT                 KKSLYGLKQSARVWNKRATEVLAQMGFLPGKADQCLYTRKEKDGTITYILL
FT                 YVDDLLVASTTEKMIEKISRSIQKHFRIKYLGNVNHYLGIRIERKEDGSFL
FT                 LSQKEKVIKLLEEYSLLESRPVATPMETSFLNSGSSARLPNNSKFRQAMGL
FT                 LLYIATVTRPDIALAVRILCRRFENPTVQDWNAVKRIIRYLASTIDKKLEL
FT                 SSTGKMELECFVDADWAGDRVDRKSTTGCVFRLGDGTVAWSSRKQTSVAMS
FT                 STEAEYVAVSHASKELLWLRQLLRDMHILEKDPTIIYENNQGCICLIGSDR
FT                 CGVRTDVNT"
XX
SQ   Sequence 4068 BP; 1447 A; 730 C; 946 G; 945 T; 0 other;
     ggttatgggc ccagacttag aaggacaaac aaaataaagc aagatataaa gatataacac        60
     aagtgaaaag gctgacgtac acataacctt taagatggcg caagacaacg tgaaattcaa       120
     tatcccatta ttgaatggag gtaattatgt cttctggaaa accaaggtac gtgcaatatt       180
     aacgcgcgat gatttatggg acgttgtaaa tgagcccaag ccggcacagc ctgacgaggc       240
     gtggaaaaag cgcaataata aagcaatggc aacgatcacg ttaagtgtag aagacagtca       300
     attaatacat ttcgcgcatc ttgacaacgc gtttgataca tggcaggcag tattgagaaa       360
     atatgaacgt tcaacatttt gcagtaggtt atatctccgg agaaaattgt atagtatcca       420
     ttaccgtagt ggatccatga gcaatcacat cgatgcaatt atggaagtgg ttggactgct       480
     atgcggatca ggaaggcctc tcgaaaatga ggaaatagtt gccgttctat tggtaagttt       540
     accagaatcg tactcgagac ttgttacagc gctcgaggga agagacgagg cagatttgac       600
     agtggaatac gtaaccggaa aaatgttgga cgaatatcaa aaacgcatgg aaagcaatga       660
     gtcaagtgac aagaattctg aggtggcact tcagtcagca gttgcaaatc caagtaatta       720
     cagccgtatc aataaaggtg agaaagataa acgtgttgta aaaagggata acaaagaaac       780
     gcgaacatgt ttcttctgtc ataaacaagg acatgttaag gcaaattgca gattttttaa       840
     gaaatcttca cagcagagag gttcaagtgc agagtcggga aaagagaccg cagaagctag       900
     gagtggaatc caagataatc aaataacgtt ctccatgaaa gaagaagccc gagcagctaa       960
     tattggagta tggtatgttg attcaggggc cacgagccat atgacaaatg atcgaaattt      1020
     tttcacagta ctacaagata caaatatgaa gatattcctt gctgacggtt catcagttga      1080
     tgtagctgga attggagaag gttatttaaa gtgcagaact acagataaat taatacagac      1140
     aatagaactt aaaaatgtgt tatacattcc acgacttgat ggcggattaa tctcggtact      1200
     caagataata gaacacggat ttcgtgtaat attcgagaaa aacgactgca ctatttacca      1260
     aggacgccaa gtagtggcaa aagcagaaaa cagcggaaat atgttcagat taaagacaat      1320
     cggactagaa atgatagcta gaatcgcaaa tgtggaaaca tgcattcatc aatggcatcg      1380
     ccgattaggc cacagggatt tgaaagcaat aaaaccctta tcaaaggaag gactagccac      1440
     tggaataaaa ataaccgcat gttctaacga gataatttgt gaacactgta tcaaaggaaa      1500
     attggctcaa acaaagtttc caaaaagtaa aagaagagag aaagagccta tgaaattgat      1560
     ccactctgac ctatgtggcc cgatgcagac tgctacgcca aatggtaata aatatttttt      1620
     aactctaatt gatgattatt cccgttttac agtggtatgt ctactgaaaa caaaggatga      1680
     ggtctcgaac gtcataaagg agtacatcac tatgatgttg acaagatttg gaaggaagcc      1740
     tattgccttg cgaacagata atggcaggga atatgtcaca tctgagctga ccaatttctt      1800
     aagaaaagaa ggcattcaac accaacttac tgtagcatac acgccgcaac aaaacggagt      1860
     tgctgagcgg aaaaatagat cattgactga atccgcgaag tgtatgttat tggatgcaga      1920
     tttaaataac cgcttttggg gagaagcggt attaactgca gcgtacttac aaaatcgtat      1980
     agtaagttga agcatcaata aaactcctgt agaaatgttc actggaaaaa ggccggacct      2040
     tagacatatt cggatattcg gttcgaaagt ttattccttc gttcctaaac aaaaacgcaa      2100
     gaaatgggac gacaaagcca atgaaggtgt attagttggc tatgatggaa acactaaagg      2160
     atatagaatt ctaaacccaa ggacaaatcg gatttgaatc agccggtctg taagaataat      2220
     agagcatgat accgagaaga caaatgtacg acacaatttg gatgaaaaag gagaaaagca      2280
     tgataaaaca gcacgggacc tttggctacg aaatgttacc aacagaagat gaggaaaata      2340
     gcggaactga ttcagaagaa gaatctgaga actgcgcatt ggatgaagaa gaatgtgaga      2400
     taccagttgc taagcccgaa caaccacaga gacgggaatc acaacgaacg aataaaggag      2460
     tacctcccct gagattggca tatagagcac aaacgaattt gatcacagag ccgggctcat      2520
     ggactgaaat gatggaatta ccattgcgcg aacgagagcg atggatagca gcagctaaag      2580
     aagaaataaa atccttgaac gaacacaaag catgggaact cactgaactt ccaccgggta      2640
     agaaaacaat tacatgtaaa tgggtattca aggccaaatc agatgatgaa ccctacttac      2700
     aaagcccaat tagtggctag aggtttctct caaatttacg gaaaggatta tgatcaagcg      2760
     ttctcgcctg tggtcaagca tgaaactata cgcatcttac ttcttattgc agctcaaaag      2820
     aaattacatg tacgtcacct ggatgtgaag agcgcttatc taaacggcga acttgaagag      2880
     gagattttta tggatcaacc gcaaggtttc cagaaacgag gacaagaata caaggtttta      2940
     aaattaaaga agagtctcta cggcctgaaa caatcggctc gagtttggaa taaacgagca      3000
     acggaggtac ttgcccagat gggtttcttg cccggaaaag ctgaccaatg tctatataca      3060
     agaaaggaaa aggatggaac cataacttat atactactgt atgtcgatga tcttctagtg      3120
     gccagcacaa ctgagaagat gattgaaaag ataagtagaa gtattcaaaa acattttcgt      3180
     atcaagtatt tgggaaacgt caatcattat ttagggatac gtatagaacg taaagaagac      3240
     ggatcatttt tgctcagcca gaaggagaaa gttatcaaat tgctggaaga gtatagtcta      3300
     ctggaatcaa gaccagtagc cacaccaatg gaaacaagtt ttttgaattc aggatcaagt      3360
     gcaagactac cgaataattc aaaattcaga caagccatgg gattgttatt gtacatcgcc      3420
     acggtaacaa gaccggatat tgccttggca gtaaggattt tatgtcgccg cttcgagaat      3480
     ccgacagtac aagactggaa cgcagtcaag agaataatac gttacctagc atctacgata      3540
     gacaagaaat tggagttgtc ttctacaggt aaaatggagc tggaatgctt cgtggatgca      3600
     gactgggccg gagacagagt ggacaggaaa tccaccactg gatgtgtctt ccgtctggga      3660
     gatggaactg tggcatggtc aagccgcaaa cagacttcag tagccatgtc atcgacagaa      3720
     gcggaatatg ttgcagtatc acatgcaagc aaggaactac tttggctcag acaactgctt      3780
     agggatatgc atatcctaga aaaggaccca actattatct acgagaacaa ccaaggatgc      3840
     atatgtttaa tcggatcgga tcggtgcggt gtacgcactg atgtaaacac atagatgtct      3900
     gccatcatca catccgggac ttgcgagaag agaaggtgaa ataaagtact gtccaactga      3960
     ggctatgttg gctgacgtct tgacaaagcc gctaccaagg gaacgttttc tggaattgac      4020
     cagatgcctg ggaatctgct gattcaaact tgccaacgcg agaagggg                   4068
//
ID   Copia-17_SI-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   AEAQ01022875;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-17_SI_;
KW   Copia-17_SI-I; Copia-17_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-253
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022875; Positions    1516    1264.
XX
SQ   Sequence 253 BP; 54 A; 62 C; 43 G; 94 T; 0 other;
     tgttggagca gatggcgctt atgccaagtt ttcatagtta ttttttcgat taaggcgcta        60
     tctatgacca tctcggttgt ttccgctcta ttgtgcgctt atgcaaaact ctctattgta       120
     tctgttacgt ttcggccccc cccccttgcc accaaaatat atatgtgtgt gcatctctgc       180
     attaatactc tttatcattc ctgtccactg cgtacgatca ttaagatatt tccgaagtcg       240
     atttattcca tca                                                          253
//
ID   Copia-180_AA-I repbase;    DNA;    INV; 4157 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-180_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4157
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4157
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1450-1450 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4157 BP; 1122 A; 866 C; 1204 G; 962 T; 3 other;
     ggttatggsc ccagtggagg atcggtggaa aacgggttgt attcgcgata aaaattgaaa        60
     agttttcgac ggtcatcgcg gtgttgtgcg gtggtagttt ttcgtcgttg tttgcgtgtg       120
     gtgttcgtcg gcaagtttgt ttgttagagc aagatggcag aagtgggaaa gtttaccctc       180
     gccaaactca acaacaacaa ttatgcgacg tggaasttcg aggttgagat gcttctcacg       240
     agagaagatc tctggcatgt tgtggatgaa gtgaagcccg aacccgtcac ggatgcctgg       300
     cwgaaagctg acaggaaagc gcgggctaca attgctctct gtgtggaagc gagccagtat       360
     acactcatcc agggatgtga ttctgctcgt gaagtttggg atgcgctcaa aggataccat       420
     caaaagtcaa ccactacctc ccagctgtcg ctgttgatca agctgtgcga tgcgaagctc       480
     caggagggtg gtgatgccga aaaacatttg ctcgacatgg atatgctgtt cgaacggctg       540
     cagaatgtgg gacttgttct ggaggaaaag cttaaggtgg caatggtgct gcgcagtatg       600
     ccagaatcgt atcactattt ggcatcggcg ctcgaagcta gaccggatga tgatatcact       660
     atgcagctcg tcaaatcaaa attgttggat gaattccaca agcgctgcga gagaggcagc       720
     aaaggacccg gtggcgaaca ggtgctcaag acacagtcga gcaaggcctg tttcttctgt       780
     aagcagcccg gccactttaa aaaggattgc cggaagtggc gtgcgatgaa ggagtcgcaa       840
     agtgaagcag gatcttccgg gaacagtaaa ccgtttggtg gtaagagcaa agccaaagcg       900
     aagcaagcta caaacgccga gcgggaacca gtgagttttc tggttcagga ggagagttac       960
     gtcagtcgtt cttcagctgc gcaaaaatgt tcgtggacca tcgacagtgg cgcatcatgc      1020
     cacatgacat gcagcgatac gttttttgat gctttggatg agtcgaacag tgttcaggtg      1080
     gtgatggcaa atggaaacca cacgaagtca ggtggtcacg gaagcggatt tgtgaaatgt      1140
     gtcgacggcg ctggtgaggc tgtagacgtg cggctggaca acgtcttgta tgtcccagaa      1200
     cttgatagcg ggctcatttc ggtaagtaag attgcggata agggctacga tgtgctgttt      1260
     aagcagaata gcgtcgaaat tatcgataaa tcgaagaaag ttgtggcgct gggcatgcgt      1320
     agcggcggtc tctatatgct caaggatcgt gagtgtgcag cggtgtcgaa tacgtgccat      1380
     tctgtgaatt gccagcatac atggcacaga agattcggcc atcgtgatcc agcggttatt      1440
     gatcggattc aacgacagca gttggccacg ggatttaagt tggtggactg cgggcagaag      1500
     atcgtctgcg agtgttgcct agaggggaag ttttcccgtc cccctttccc tcagaaggcc      1560
     gatcggaaga ctacccagcc tttacagctc attcacacgg atttgtgtgg gccaatggcc      1620
     aacgtcaccc caggaggcaa tcgatatttc atggtactga ttgacgactt cagtcggtac      1680
     ctggtgctgt atctactcaa ggataagggg gaagcgaagg actgtatcaa gaacttcgtg      1740
     aggcttgtcg aaaaccagtt cggcagaaag ccacaagcca ttcgttcgga ccgaggagct      1800
     gaatttgtca acaaggagct caagtcgttt tataaagagg aaggtatacg gatggagctt      1860
     accgctggct acgcccctca gcaaaacggc gttgctgagc gccggaatag gtacctgcag      1920
     gagatggcag tgtgtatgct gctggacgcc ggacttgaga aacggtactg gggagaagcc      1980
     attgccacag cgggttttat tcagaaccgg cttccttcga gatcggttgg gaagactccg      2040
     attgagttgt ggaacggaca gaagcccgat ctaagcggtc tgaaagtgtt tggatgcgac      2100
     gcctatgtct acgttccgga agtcaagcgt aagaagctgg agagacgtgc tgagaagctg      2160
     accttcgtcg gatatgaatg cggagcgaag gcgtataggt ttctgaacaa gcaaactggc      2220
     aaaatcatcg tcagtcggga cgccaaattc cttgaacttg gtgcgaagat taaggaggag      2280
     ctggaaccgg tggttcgacc aattcccagc cagcagttga cgacgacagt attcagcgat      2340
     gacagcaacg atgatcgaga tgcggaagaa ccagtgacgg gaagtgatga tgaattcctg      2400
     ggtttttcgg atcaagaaga gcccgtgaac gaagaaagtg atgaagaaga gagccatgga      2460
     gaagaaagtg gtgaagggga aagtgctgga aggcctaagc ggagcaccgc tggggctttg      2520
     cctaagaaac tcagtgattt tgttgtgggc gttgcaaaaa tcgaggaacg agatccaaag      2580
     gactataaag aagcaattgc aagtgttaac aagaaacaat ggcgtaaagc tatggacagt      2640
     gaatataagt cgcttctttc gaacaatact tggaagcttg ttcctctgcc aaaaggacgt      2700
     cacgcaatcg gctcgaagtg ggtgttcaaa cagaaaaagg actcttgtgg acaaacagtg      2760
     agatttaaag cgcgcctggt agctcagggt tacgcgcaac gctacggtga agattttggt      2820
     gaggtgcatg ctccagttgc attgcagcaa acgttcaaag tgcttctaac agtggcggga      2880
     cataacaacc tgcaagtgcg tcatgttgat gtcaggaatg cgtatttgaa cggagtgctt      2940
     catgaagaaa tcttcatgcg ccaaccgccg gggtacacat cggcgggcaa tgaagcgctt      3000
     gtctgcaaac tgaatcgtag catttacggc cttaaacagg ccgccagggt ctggaatgcg      3060
     accatcaagg aagttctcat tggtcttgga ttccggcagt cggaggcgga tgcctgtctg      3120
     ttcagtaaga agctatcaaa cggtgagtgg atttatttat taatttatgt tgatgacatg      3180
     ctcctggttt gtcgagatgg acatcaaatc gacgttgttg agaacgcact aaggaagcat      3240
     tttgagatta cctcactagg ggagataaaa cagtttctcg gtatcaacgt cactaaagac      3300
     aaggacggaa tgtacatgct gagccagaag gccttgattc gggaagtatc agaacggttt      3360
     gggttgacag acgcaaaacc gtcaaagtat ccagtggatc ctggttactt tcgtctgaac      3420
     ggtggagaga aacttcctga taacacacag taccacaagt tagttggagt gcttctctac      3480
     atctccacta actcaagacc ggacatatca gccgccatct ctattttgag tcgaaagacc      3540
     aactgtccaa cccaactgga ctggttggaa ctgaagcgta ccgtgcgata tttgatcggt      3600
     acccaagatt acaagttgag gcttgccagc gatcggacga agaatttgga attggtcgga      3660
     tacagcgatg cagactgggc cggcgacacc gccgatcgta aatctaccag tggattcgtt      3720
     tttcaactag gggaagctag tgtcagctgg gctagccgaa agcaatcgtg cgtagcaacg      3780
     tcgacgatgg aagccgagta tatcgcgcta tccgaagcag ctcaggaagc aacttggctc      3840
     cgtcgcttac tgggagaact aggtcaagag caacgacaac ctactatgct aaacgaagat      3900
     aatcgcagtt gcattgactt cgtttctttg gagcggcaga ataaaagaag caagcacatt      3960
     gatactaagt tttatcatgc tcgggatcta tgcagtcgtg aggtcatcca gttacactac      4020
     tgtcctactg atagaatgat cgcagatgtg ttcactaagc ctttgggcgc taccaagatg      4080
     cagttgttcg cggagaagct tggtctgtgt cctaagcgga agtctacaaa tgaactccag      4140
     tgatcagcga ggaggag                                                     4157
//
ID   Copia-180_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-180_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-233
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1496-1496 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 233 BP; 64 A; 57 C; 46 G; 65 T; 1 other;
     tgtcggcata tccagtcgca gggcgctgat gcactggcaa ctagaaaatg cccgagtcac        60
     agggtcagcg aagagaagaa gaacaaaaac attattcctt catctgtcat tcttttactc       120
     gaattaaagt tcacacgtgt taaacataag ttctccggtt aaacgttatt ttatccgatt       180
     cccacgcatt tattgggttg ccactctgct aagtccgttc cctggtwcca aca              233
//
ID   Copia-181_AA-I repbase;    DNA;    INV; 3984 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-181_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3984
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3984
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1451-1451 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3984 BP; 1047 A; 986 C; 1120 G; 831 T; 0 other;
     ggttatgggc cattcggaag ttgagaaaaa gtagttcttt tttcggttag tgagaaccgg        60
     aaaaccacaa gttttgttcg aggacgcgcc gcaattggat ttgccggtca ccgacgaaat       120
     ggagaagttc agcatggaga gacttggcag cgacaactac gagtgctgga gttttcagct       180
     gaaaagcctg ctgatgcggg aggaactgtg gaagtatgtg accacagacg cgccagaacc       240
     agtcaccgag gcgtggacaa acggagacgc caagacgcaa gggacgattt cgttgttcgt       300
     cggaatcacg cagcagtcac tgatccgtaa gtgtaccacc gccaagcaaa tctgggagac       360
     gctcagggac catcaccaga aaacctccct cacatcgaaa gtgtccatct tgaagcggat       420
     ttgcaacctc acctactcgg acggcgacga catggaacgc catttgcacg agatggagga       480
     tttgttccaa cgattggcga acgccgggct ggaattggga gccacactga cggttgtgct       540
     cattctgcga agcctgccgg cgtcatacga aactctgacg accgcattgg agagccgccc       600
     cgaagacgaa ttgacgatgg acatggtaaa aaggaagttg ctggatgaag ccctcaagcg       660
     aagcgagaga tccggccaag gtgagtccat tttgcgcgtc gaagccaagt ccatcacgtg       720
     ccaccattgc aagcaaccag ggcacatgaa gaaaaattgc ccctcgcttg gccgaaaaac       780
     cgacgcgaag cagaaaaacg acgccaagca aacaaaaccg aaagcgcggg ttgccaaggg       840
     caacgatggg gtggtgatgt tgccgtttgc gttcgcagcc aacccgaagc ctactgcgat       900
     gcaatcaaca agcaactgga tcatcgattc gggtgcatcg agtcacatgt gcagtgacaa       960
     atcgttcttc gaccgactga agccaatctc gggaatgtcc gtcactcttg ccgatggtcg      1020
     cgtggccgat gtcgctggaa aaggaaccgg ccatctattc tgcaaagacg acaaaggtaa      1080
     gaaacaagaa attatcttat caaatgtgct cctcgttcca gagctcgatg caaatctcgt      1140
     ctctgtggga caactggccg atatgggtgc gttggtcaca ttcgacgcca acatgtgtgt      1200
     cattcagcat aaccatcgcg tggcggcagt ggcaaacaag ggtggtggtc tgtaccacct      1260
     gaatgtatgc agccacgatt cgaagaccgt tgcgacaaac cacaccaaaa attgcttgca      1320
     cgactggcac cgcaagtttg gccaccgtga tatcgaggcg atccaacggc tggtacgcga      1380
     ggggctcgcg actggcgttt ccgtacgtga ttgtggtgtc accgcaacgt gcgaatgctg      1440
     cttggaaggc aaaatggcga ggctcccctt tccgaagcaa tctggtccgc agtccaccaa      1500
     ggtgctggat ttgattcaca ccgacatatg cggcccgatg aacaccgtga cgccaggagg      1560
     agctcgttac ttcatgacgt tgatcgacga ccacagtcgg tttacggtgg tgtatttttt      1620
     gaagcgcaaa tccgaagccg ccgagaaaat cgaagagtat gtggagatgg tgaatacgcg      1680
     tttcggcagg tatccaacag tcatcaggtc cgaccaagga ggcgaatata agtccaaacg      1740
     ccttggacga ttctaccgtt tgaaaggaat ttcgcctcaa ttcacgaccg cctacacacc      1800
     gcaacagaac ggcgttgcag agcggaaaaa taggagcttg gtggaaatgg gacgctgtat      1860
     gctgctcgac agtgagatgg gataccgata ctgggccgag gcggttaaca ccgctgctta      1920
     tctgcaaaac cttctgccca cgagatcgac cgagatgact ccatacgaag cctggtacgg      1980
     caagaaaccg aatctcgacc acctgcacgt tttcggcacc caagcgtacg tgcatatccc      2040
     gtcggagaaa aggtccaaat tggagccaaa agcggtgaag atgacgctgg tgggatactc      2100
     taatcagcac aaagcgtacc gtttcatcga tccgtccacc gataaggtgg tgttcagccg      2160
     agatgcacgt tttttagatg gagagaagcc agtcaagcaa tcgatcaagc caaccgatgt      2220
     tatcgagatc gattcaccgc tgccgcgtga tacgcaatcg gtgcttcaac ctgatgatga      2280
     cgatgccgat tcgtatgctg aatatgaatc cggtgaagat tctttcgacg aggagtttga      2340
     tgagccagcc actccggtgc gcgtttcgga gcgcattacc aagggtgtac ctcctgctcg      2400
     gtaccgcgaa accagtagct tggtacacaa tttgccacct gaacctagac agtacgaaga      2460
     agcgctcaac ggtcccgaaa gtgcactgtg gaaagttgca attgaggagg agctgcaatc      2520
     gcttcgtgca aaccgcacgt gggagctgac tgacctcccc gccgatcgga aagctatcgg      2580
     atccaagtgg atattcaagc gcaagctgga tgaacgtggc aacgttgtgc gctataaggc      2640
     tcgactggtg gcacaggggt tcacacagaa gtacggaacc gatttcgacg aggtgttcgc      2700
     cccggtggtc aagcaggtca ccttccgtgt tctgctgtcg gttgctagcc agaagaagat      2760
     gatcgtcaaa cacgccgacg tgaagacagc ctacctgcac ggggttctgg aggaaaccgt      2820
     gtacatgcgt aggccaccag gtctacctac gaaggacgag ggcaaagtgt gcatgcttcg      2880
     aaaaagcttg tacggcctga agcaatccgc ccgcgtttgg aatcaaacgt tcgatgcagt      2940
     cctgaagaag atgggtttcg agcaatcgaa aaacgattcg tgcctctaca ttcgtcgagc      3000
     cgggaagaag tgcacctact tggtggtgta cgttgacgac ctggtcgttg cctgcgaaga      3060
     agaagaagag tatgagcgaa tcattcgaga gctaaaccag catttcgaag taacgtcgtt      3120
     gggagacatc aagcatttcc tgggcatcga ggtgaaccga tccagtgaag gcgtaagctt      3180
     gaatcagtca acgtacatcc gaaaactgtt ggagcgtttc ggaatgacgg atgccaaacc      3240
     atcaaagttt cctctcagtc ccggtcacac acaatcaaag gaggagacag atgccgacaa      3300
     attgccaaat aatcaccaat tcgccagttt gattggtggt ttattgtacg tggccgtgaa      3360
     cacgcgtccg gatattgcag ctgcagtttc cattctgggg aggaagacca gctgcccgac      3420
     gcaagctgac tggctggaag caaaacgggt attgcgatac ctgaagcaca cgctgaacga      3480
     cgagttggtc ctgggagtag atggatcagc actgaaggtc tacgtcgacg ctgattgggc      3540
     cggcgacact agtgaccgaa aatcgacgtc tggttttctg ttccgtttcg ctggtggttc      3600
     gattagctgg agctcgaaga agcaaacttg tgtcacactc agtagcaccg aagccgagta      3660
     cgtggcactt gccgagtgcc tccaagagtt ccgttgggtt cgccgaatat tgagcgattt      3720
     cgacgttaac gtgacatcac cagtggtggt atacgaagac aaccaagggg tgatcaaaca      3780
     atcgaattca ccaaccattg gccgccgttc gaagcacatc gagacgaaat tccactttgt      3840
     tcgagatttg ctgcagaatg gtgaaatcga cattcgttac tgtccgactg atgcgatggt      3900
     tgcggatatg atgacgaagc ctttgcagtc cgtaaaactg aggggtttcc gtgaagctgc      3960
     tggggtcctt ccgtcgagga ggag                                             3984
//
ID   Copia-181_AA-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-181_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-184
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-184
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1497-1497 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 184 BP; 52 A; 37 C; 37 G; 58 T; 0 other;
     tgtaggagat gacgacgttg aacgcagcat gccatgaaca tttgaattaa agcatgttgc        60
     tatggttacg cgcatgtagc gcttagcgtt aagcttttag aaaataaatt ttcactttcc       120
     cgttgtagtt catagaacac acacgtgttt ttattagtct atccgaccta cggccattcc       180
     aata                                                                    184
//
ID   Copia-182_AA-I repbase;    DNA;    INV; 3992 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-182_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3992
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3992
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1452-1452 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3992 BP; 1108 A; 841 C; 1155 G; 888 T; 0 other;
     ggttacgggc ccagcaatgg atgacaagac gaagattatc gcgttcgacg gaagtggttt        60
     ccacaattgg aaattccgct tggagacggt tttggacatg cacgatttgc tcgaatgtct       120
     ccagcgggaa gtggcggaaa tcgacgagtt tcgcgttgag gcaagcgata cggcggtggt       180
     gcgtgccgaa aaagaaagga agatcgccga gtggagagtg aaagagaaga agtgcaagtc       240
     aataattgtt caggcaatca gtgacaatca gttagaacta ataaaagatt gccctacgcc       300
     gaaactgatt tgggacaagt tgagaagcgt cttcgaacga cgcggggtcg ccggacaatt       360
     atttctacgc aaacagctcc tgacattgaa atatgtcgag ggagcaggca cgagcatggc       420
     ggaccatttg ctgcgcttcg ataagttaat tcgcgaacta aagggaagcg gggctacggt       480
     ggaggaggcg gacgcggtat gccatttgct ggtaacgctg ccagcgtcat ttgactccgt       540
     cgtcacagcc atcgagacgc tcccgggaga catcaccatg gattttgtga aaaagcgcct       600
     gttagatgtc gacatgaagc gaagaaatgt gtgtgcagtg gacgatgctt gtggtagtga       660
     gagcggcgtg gcgatggcga gcaaacatgg acagaagaaa agaatgaaat gctaccagtg       720
     cgggaaagtg ggccaccgaa aggccgagtg tcgtcagctc gatcgcgcga acgtacagcc       780
     gaaagcgaat caccaaaaca acccgaacgc gaagagagat gtgaacagtc aaaaagcgaa       840
     cgtgggaaaa gaagaggaca aacccgaaat tgcttttctg acagccgaaa acgatgagtt       900
     tgtgcgtgtt ggttggtttc ttgactccgg cgcgaccgaa cacatgctgt gtgatgcgaa       960
     atacttttca tcgatgcgaa agctcgaccc gccggtcgaa atcgtcgtcg cgaatggaca      1020
     gaaagtgtct gccgagtatt gtggtgacgt cacgatgtac gcggtggtgg gcgagatggt      1080
     gaaaaagtgc gaggcaaaga acgttttgta cttgccccgc ctgagctgca acttattttc      1140
     agtgaaacga attgcaaagt cgggactgcg agtgtgtttt gatggtgaaa aggctgagat      1200
     tctgcgaaac gacactgtgg tggctgatgg acagttgcaa ggcaagctgt atgagttaaa      1260
     catcttctgt aagcgtagtg aaatgggatc ggctctagtg acgggaaaag tgtcgcgaaa      1320
     tgctgtgtta tggcatcaac gatacggcca cgtaggctgc gacagccttc gcgaactagt      1380
     gcgcttcgac atggtgaatg gattgacgct gacaaaattc gacgcggacg cggtggtgtg      1440
     tgaaccgtgc ttgtccggaa aaatcgagag gctaccgttt ggatcggtgg atgaacggcg      1500
     ttcgtcgcgg gttttagaac tgatccacag tgacgtttgt ggaccgatta cgcctcatac      1560
     gtggaacgga aaacggttct ttgtctcatt tacagacgat ttctcgcatt tttccgttat      1620
     ttacttaatg gcaacaaaag atgaagtgat cgatcgtttt cgcgaatacg aagcgctagt      1680
     gacgtcgcat ttcggtacgc agatcgcgaa gctccgaacg gacaatggcg gcgaatacgt      1740
     taacgaagag atgcgtgcgt tttgccggga aaaaggaatc gaaatgcaac tgacagtgcc      1800
     gtacacgccg caacagaatg gcgtggcgga gcgcctaaat cgtacgctga tggaacgggc      1860
     cagggcgctt ctggtggaga gtggttttgg gaaagaaatg tggggtgaag caacctacac      1920
     cgccacgtac ataacgaacc gctgcccaac gtcagctgtg gtcgaaaaca aaacgccgtt      1980
     cgagctctgg aatggtcgca agccggacgt atcaaagctg aggattttcg gaagcacagc      2040
     gtatctccac attccgaaag agcgaagagc aaagttagat ccgaagtgca aaaagttata      2100
     ccatgtggga tatactgtga atggctatcg cctttgggat gccgagaaga agaagatcgt      2160
     ggtcggaagg gacatagtgt ttgatgagga ctccctgtac tgtgacaaga aattggaaga      2220
     gaagaaaagt gttcctaaag tggttgaact tgtttgtgac gatttggtga accggaatac      2280
     ggtggaacca gtggatgcgg ctggtttgga agaagattcg gattcggaac aggaaaacca      2340
     acaaccagcg gatgtgagga ggagtgatcg agttcggcga cagccggcgt ggttcgactg      2400
     ctatgaatta gccgaaaccg cgttgtgtgc cgaaaacttc gtcgaggata tccccagttc      2460
     tgtggaagag ctccgcaagc ggatcgattg gccggaatgg caagctgcca tcgcggacga      2520
     gatggcctcc ctaatcaaaa ataagacgtg gattctgact tcgctaccac caggtaagaa      2580
     tcttatcgat agtaaatgga tctttaagat caagcataac gatgtaggag gaatcgatcg      2640
     ctataaagcg cgattagttg cgcgagggtt ttcccagcgc aagggatttg attatgacag      2700
     cacctattcc cctgtggctg ggttgacaac tctgcgggtg ttactggcca ttgcaaatca      2760
     agagcgaatg catctgcatc aacttgatgt aaagactgcg ttcttaaatg gccacttgga      2820
     tcaagaactc tacatgcgct taccgaaaga attcgattct ggcggcctgg tagcgaagtt      2880
     acagaagtct ttatacgggc ttaaacaggc ctctcgagcc tggaattccc gattccatga      2940
     attcattacg acctttggat tccggcgcag cgagatcgac aactgtctgt atattgcaac      3000
     aatcgctggc caatcggtat tcctaattat ttatgtggac gacatactta tcgcttgtca      3060
     ttcactgaac gtaatcgcca agctaaaggg aaagttgaag gccgaattcg aaatgaccga      3120
     tattggggag gtgcgtacgt ttctgggatt gacaatcgtg cggcgacagg atgaaggcat      3180
     catggagatc gatcagaggc gatacctgca gcgacttttg gaccgatttg gtatggccga      3240
     ttgtaaaccg aaacagacac cattggaggc taacttgaag ctggagaaat gtaccaacca      3300
     aagcaagtgc actaccaagc cctaccgtga actcatcggc tgcctgagtt atgtagcagt      3360
     tacgtcacgc cccgatatct cagcagctgt caactactac agtgcctttc aaagctgcgc      3420
     cagtgacgag cattggaacc atgcaaagcg tatactgcgg tacataaaag gaaccctcga      3480
     ttacaaactg gtcttcagac gcatcgaagg cagtgcattg gtagaaggat atgccgactc      3540
     ggactgggcc ggcgacacag gggatcgtaa atcccaatcc ggattcgtgt tccaggttta      3600
     caagtcgacc gtatcttgga cagcgcaaaa gcagaagaca gtggcccttt cgtctgctga      3660
     ggccgaattc atctctttga gcggcgcggt aaaggaggcg atctggttga ggatgctgct      3720
     aaaggacttc cagcaagacg ttgatggtcc tacggttatc cacgaagata atcaagcttg      3780
     tatcaccgtg gcggaagacg acaagatgac gaaacgcttg aagcacatcg acgtgcgcta      3840
     ccgtttcgta caagatgaag tgcagagaag aacagttcgt ttgaaatatg tagcatcaga      3900
     agaacaaatg gcggacatta tgaccaaagg tcttactaga gtacaatttg aaaaattacg      3960
     tgaattgcta ggtgtatcgg cttgaagggg gg                                    3992
//
ID   Copia-182_AA-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-182_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-217
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-217
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1498-1498 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 217 BP; 42 A; 57 C; 39 G; 79 T; 0 other;
     tgttaaccgt gttcaataac gcaaccgact acaccatgca tgcagccctt ctggcaacac        60
     ttcatttcta tgcgtttctg tatttccgct tttgacaata aatacttcac ttcgagtttg       120
     actacctacg agtacaaacg tgttttcctt tctctcgtcc ggagccctcg gtaaagttgt       180
     ccttcttggt ttcgttttgt gttgcgccgg tctttta                                217
//
ID   Copia-183_AA-I repbase;    DNA;    INV; 3986 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-183_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3986
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1453-1453 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3986 BP; 1126 A; 878 C; 1068 G; 913 T; 1 other;
     ggttatgggc acctctacga aagaagctgt gtgtggtatt ccacaattcg acggtggtgc        60
     aggattccag cattggagct tccgggtcaa gatgtttttg gactctgtcg gcgttttgaa       120
     tacgttaact caagamgcac cggaagctgc tgcggagaag aagaagtttg aagaatcaga       180
     tcgaaaggcc aagaatcaca tcgtcagctt tcttgcaaac gaatgtctgg cgatcgtgtg       240
     cgaaaagaaa acggctagag aaatgtggaa ggctcttgaa aattcttttg cgaagcggtc       300
     gattagcact caaaacctgg taaggaagca gctcaaccgt ttgaagctcc gagacggtga       360
     ttcgatgagg gcgcatttac tggcttttga cgatttgatc aggcaattga agaccgctgg       420
     cgcaaaaatt gaagaagctg atctggtcat ttcgctgttt caaacgctcc ccgacacgta       480
     cgaccctttg gtaacggcac ttgaaaacat tcctgaggaa gagctgagtt tggaagctgt       540
     gaagcaacgc ttactagcgg aagagctcaa acgaaccgaa cgtcacgagg actcaggtga       600
     ggtgaagttg gcagcgttct ccggagacaa gcaccggaag ccgatttcga agccaatgaa       660
     gtttcaaggc aagtgtcaca aatgcggtaa acggggccat atgaagaagg actgtcgaca       720
     gaaaactagt gaagctaatt cggccgacca acgatcccag cggaccgcgg taagtttcgt       780
     cgcaagtcgc aagaatgaga agtttcgaag cggaaaagtg gtcttcaaac tcgactcagg       840
     agcaagcgac catctcgtaa atgaagcgga aatattttca gaaactcgca agctgaagac       900
     acccatcgag attcaagtag ccaaagacgg tgaagcgctg gtggccaagt tcactgggac       960
     tatcgccgga agcagcaaca agagaacacc gttgatcatg aaggatgtgc tctatattcc      1020
     cgaattacga gacaacctga tgtctgtgaa gaaactggtg aaggccggtg ttgtggtgat      1080
     cttctgcggt tccgaagcga ttctgaagaa aggcgatgaa gttattgcta ctgcgaattt      1140
     gcgaggaaac ctgtacgaga ttgaggtgga cattccagtg gcatcggcga atttatgtca      1200
     aactgaagcg accaatttgt ggcatcgaag gctcggacat ctcagtcaac aaggaatgaa      1260
     agcgatcgta agtaacaacc ttgttgatgg cgctaatttc aaggcagaca agctgccatt      1320
     ctgcgacgcg tgtgtgcagg gtaaactttg ccgtgaacca ttcaacggaa cccgtccacg      1380
     atcttcaaag ccactggaaa gaatccattc agacgtctgc gggccgatcg agccaactgc      1440
     gtgggacgga tcgaagtatt tcgtttcctt cattgatgat cacacccact ttgcaatggt      1500
     gttcctgatg aagagaaaat cggaggtgtt cactcgattc cgtgagtacg aggcgatggt      1560
     gacagcgcaa ttcaatctga agatttccag gatgacaatt gaccaaggcc gtgagtatct      1620
     gtcgaacaat cagaaacagt tctatttaca gaaagggatc caggtcgaac cgactgttgc      1680
     atacacgcct cagcaaaacg gcgtcgcgga gaggttcaac cgaaccatag ttgaaaaggt      1740
     ccgcacaatg ctgatagatt cgcatgtccc aaaaacgatg tggtcagaag ctgtccgtac      1800
     tgccgtgtat ctggtgaatc gaagccctac cgtcgccctg ccaagaagtc tgactccggc      1860
     tgagtgctgg tacaatgaga ggccaagttt ggaaaagctc cgtgtttttg gttgtaaggc      1920
     gtttgcctgg atacccaacc agcacagaaa gaaattggat gccaagagta ccgaagtcgt      1980
     catggttgga tatgctccca atggctatcg tttgtgggac aggaagtctg gacgaatcgt      2040
     actcgctcga gatgtcaagt ttaatgaaac ttttttcccg tacgaaaaga accgcgaaga      2100
     gcatgacaag gttccactag tcgttgtacc gtatgagcat gaagagactg ttactcaaga      2160
     tcaactgtta gtagacgaac gctatgaggg tactcctgat cctggtgttg atccttgtga      2220
     tgaaaggcag cctgacgatg catcactgtt acgtgctggt tctccgattg ctgacgacga      2280
     ggaagttttc gaggcgaatc aaaccggggc gctcccttcg caaacagaac aactcgagtc      2340
     caatggacaa gcgacgttga ggcgcagcga acgggagcgc aggctccccg gtaagttatt      2400
     gaactttttt accggttaca gagcaacttc tgttgcgtcg tattccacag atgctcctca      2460
     gtgctacagc gatatcgaga aacgggatga tcgaaccaaa tggctggagg ctatcgatga      2520
     cgaactgaga tccatggagg caaacggtgt gtggaagctg gcgtcctgcc cgcgcggcgt      2580
     gaagccccta aaaaccaaat gggtattccg cgtaaaggaa aatgaagatg gtcaagctgc      2640
     tcgttataag gcccgattag tagcgaaggg ctacctgcaa cgtcatggcg tggactttga      2700
     ggagacttat gcgccagttg caaagctagc cactatcagg acggtgttag cagtaggcgt      2760
     ccacaagcgt ttccattttc accagatgga cgtgaaaact gcgttcttac atggagatct      2820
     caaggaggat atatacatgg aaatccctgc cggcgtcaag gctccaccga acatggcatg      2880
     caagctgatg aagtcactgt atggattgaa gcaatcacca cgttgctgga atgaaaaatt      2940
     caacagtcaa ctaatcaagc ttggtttctg ccgatctcgt cacgactatt gcctgtatat      3000
     tcgtagcgga gatgatgatg agctgtacat cgtactgtac gttgacgacc tactaatcgt      3060
     ggggaggaaa ttggagtcca tcgttcgttt gaagaagcaa ctttcaactg tttttcgtat      3120
     gactgattgt ggagaagctc gtcatttcct gggtatgaag attgcgtacg accggcaaac      3180
     aggagttctt cagctttcgc agcaggcgca tgtggaaaag gttgtaaaca atttcggaat      3240
     ggcagaatgc aatcccgcca agtcacccat ggaaaaagga ctgcaactac aacgagaggg      3300
     gacacctaca aaagaaccct accgggagct gttaggcagt ctaatgtata tcatgttgag      3360
     cgttcgcccg gacatctgct ttccagtagg gtacctgggt cgatatcaac aacatccaac      3420
     agaagctcac tggcaaagtt tgaagagagt cgttcgatac ctaaaaggaa gttcaaatac      3480
     tgtactgacg ttccagcgca ctgatgctcc gcccctgatt ggatatgccg atgccgactg      3540
     ggcggctgac agcgaggaca ggaagtctgt ttccggatat accttcaagg tctttggatc      3600
     gacagtgtca tggtgcagca aaaaacaaag taccgtggcc atttcctcaa gtgaatccga      3660
     gtacgtcgct ttgagtgccg ctactgctga agctctttgg ctggctggag ttcttgagga      3720
     catgaagatg aagaatccag aaacacctgt gacgatattt gaggacaacc gaggctgtat      3780
     cgggatggct aacaacttgg agaccaaacg atcaaaacat atcgatgtta aacaccattt      3840
     catcagggat catattgctg aaggacgaat ccaagtaaaa gccgttggta ctcaagatca      3900
     attagccgat atatttacga agtccctgga tcctggcaga tttcaagaat tgcgacagaa      3960
     actagggcta aacgattgag agggga                                           3986
//
ID   Copia-183_AA-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-183_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-153
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-153
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1499-1499 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 153 BP; 44 A; 38 C; 20 G; 51 T; 0 other;
     tgacatcgaa gcaacctgct agtttggacc aatcgtttat ctgaacacag taaccttggc        60
     ttctttgaca tcttttactt tttatcattc tcaaaccaac ctctgaataa accacacgtt       120
     ttgattacac gagctctgcg ttcattcata aaa                                    153
//
ID   Copia-184_AA-I repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-184_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4117
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4117
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1454-1454 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4117 BP; 1085 A; 862 C; 1276 G; 894 T; 0 other;
     ggttatgggc ccaggctagt tcgcgatttt aaaatcggtt cgttcgcaag aaaaagtaac        60
     ggaacggttc gtttttcggt cgattgttcg tggcatcgtg catcggctgg tgagttcctg       120
     caagcagcaa aatggcggat tcgcagaggt ttgcaatgca taaattaaac aatcacaact       180
     atcagtcgtg gatgtttaag atggagatgc tgcttatccg agaggagacg tggcacgtta       240
     tctccgaagc tccagtggac ccagtaacgg aggcgtggac gaaagcggat gcaaaagctc       300
     gggcgacaat tgggctctgc gtggaagacg accaaacaag tttggtgcga aattgtgcga       360
     cggcgaaggc tgtttgggat gccctgaaaa actaccacga caaggggtcg gaggtatatc       420
     tgctgaagaa gctaacgcac ctggatttga aggaacaggg cgatatggag cagcatttgc       480
     aagcgttttc ggatctggtg cagcggatcg cagacgtcgg cgatgcaatc ccggagaagc       540
     tactagtggc aatgttgttg tgttccctgc cagacacgta tgactatttg gcgacggcat       600
     tggaacagcg gtcacgggaa gagttgacgc ttcaactggt caagtcgaag ttattagtgg       660
     aggcagaaaa acgccgggag cgcagcggtg gtgctacttc gagcagtgga catgcgctgc       720
     gagtggatca tcgtcgtcga cgcggtggag gcaaagctac tggtagtgga actaagcaaa       780
     cagagacacg ttcttgcttc caatgtaaac aaacggggca cctgaagaga gattgcccga       840
     atgctgcagc tgtcgagtca gcagtaaagc cgacgaaaaa gaagccggat gagccgaaag       900
     ccaagcaagc gcaagcactt tccgagggac cactggcttg gatggtggga caggctgacc       960
     aatcgagctg gttcatcgat agtggtgctt ctcggcatat gacgggaaat cgtaagtttt      1020
     tcaccgtgct ggagaaaact ggtggaacga gcgtgatgtt ggctgatggc gagcgagctg      1080
     acgtggctgg aaccggccgt ggcaccatcg ttggtatgac cgatagtggc aaaccgatcg      1140
     acatcgagct gagcgaggta ttgtatgtcc cgaaacttac cagtggattg gtgtcggaga      1200
     gtattcttgc caagaagaat tttaatgtta tgtttctgga gaatcgatgc gagattcgga      1260
     tgcgtaatgg ggaggtgtgc gcggtaggcg aacggcatga aagcctgtat cgtttgtgtg      1320
     ttccggagca agcgatgctt agtgtccaga cgtcacacac gtcggaatgc ctacatacgt      1380
     ggcaccgtcg cctaggacat cgagatccgg atgtggttcg agctattcac gcaaaccggc      1440
     aagccgacgg tatgaagctt gtggattgcg gtgtgcgtac cgtgtgtcag tgttgcctgg      1500
     agggaaagat ggcacgagca ccgttcccaa agagcgtgga tagaggttcg aaggagaagt      1560
     tggacatcgt acatgccgat ctcagtggcc cgatgaaacg aacgccgagt ggaaaccagt      1620
     acttcctttg cttggttgat gactacacac gaatggcatt cgtatacctt ctgaggaaga      1680
     aatcggaggc cgcagcgaaa atcaaggatt tcatcagctt ctgtcggacg cagtgtggta      1740
     agactcccaa ggtgctgcag tccgatggcg gaggtgagtt tatcagcaag gatttgcagg      1800
     attacttgag ggcggaaggc atagtgagcc agttcagcgc gccctactcg ccacagcaga      1860
     atggcgtagt agagaggcgc aaccgatacc tgaaagagat ggctctctgc atgctgttgg      1920
     aggcgaaact ggaccaaacg tattgttggg gagaggcgat cctaaccacc acctacatac      1980
     agaaccgagt aacatcaaga tccataggaa tgagtcccta tgagaagtgg tacggaagac      2040
     tcccatcgta tgagcacttt cggattttcg gctgtgacgc ctgggtgcac attccagctg      2100
     agacgcgcaa gaagatggaa cccaaagcac gtaagttggt gtttgtagga tactccaacg      2160
     aacacaaggc ttatcgacta ttggatacgg tatcaggacg gatcacgatc agccgagacg      2220
     tgaagttcct ggaggactgg cgaatggaca gcgaacgtga tccggagcag aagttggaag      2280
     taaccgaatc gaccgtggat ttggaaccaa tgccagttcc cgtaacgcca cgtgaggcgg      2340
     cacctgcggc tgaacctgaa gaagaagaag acattattgg gtatgaatca gctgaggaac      2400
     tgtattacgg agaagagaac gtccctgttc cgggagatgg aattcagcgt gaatattcac      2460
     gtcgcaccac gagaggagta ttgccagcaa ggttcgagga ctatttcgtt ggtatgacaa      2520
     cggtggacga cgagccgact tcgtacgagc aagcggtaag ttgtgcggag aaagatgagt      2580
     ggatagcagc catggatgct gagtacgagt cgctagtgtc caacgataca tgggagcttg      2640
     tagacccacc gcatgctagc aacattgtcg gtagcaagtg ggtgtacaag aggaaattgg      2700
     acgcggacgg aaaggtcgag cgaatgaagg ccagactcgt ggcgcaagga tgcagccagc      2760
     gatttgggtc cgattttgag gagatatttg caccagttgc gatgtgctca acctttcgag      2820
     tgttactgac tgtcgcgggg catcggcgga tgttcgtgaa acacctggat ataaaatcgg      2880
     cgtacctgta cgggaaacta gacgagctag tatttatgcg gcagccgccg ggttatgcag      2940
     cgccagggaa tgagaagaaa gtatgcagat taaagcgaag catttacggc ttaaagcaag      3000
     ccgcaagagt gtggcacaag acgctgacgg atattttgaa ggagtttgga ttcgaacagt      3060
     gcagttccga ctcgtgcctg taccggaagc gtgatgcgaa gaatggctgg atgtattttc      3120
     tgatttacgt ggatgatttg ctactggcct gcgcacagga ggaagatatt ggcgaggtcg      3180
     agcaagccct gcaagaacga ctgaagatta ctcggctagg agatgtcaga agtttcttag      3240
     gcatttgtgt gtggaagaac gaagatggtt tcttcgtgat ttcgcaaagt gcttacatca      3300
     gaagagtagt gacacggttt ggattggaga acgctagggg atcaaagtat ccgatagacc      3360
     caggttactt caaggttact gagaacagcc cgaaattgga gaacaatgaa gaataccaca      3420
     agttgattgg ttgcctgcta tacctgtccg ttaacagccg ccccgatgta gctgcggcag      3480
     ttggaatcct gagccggaaa gtttgttgcc cttcggtgac cgactggacc gaagcgaaac      3540
     gtgttgtacg ctacttagtc ggcacggttg acttcggact gaccttaggg aggagagctt      3600
     gtgatctagt gttgacagca tactccgacg ccgactgggc aggtgatggc agtgatcgta      3660
     agtcgtgtac cgggtacctg ttcaatctag gaggagcaaa agtgacttgg gctagccgga      3720
     agcagagcag cgtggccatg tcgaccatgg aggccgaata tgtggccctc tctgaagcta      3780
     cacaagaggc agtttggcta cgccgtctac tggaggaact gaacgagatt caacggcgac      3840
     caacaatcat ttttgaagac aatatgagtt gcctggattt cgtcgcgttg gaccagcaga      3900
     aaaagaaggc taagcacata gacacgcgat tccattatat caggagcagc tgtgcgtctg      3960
     gtgcgagttg cagtattgtg catcaaaaag catgattgcg gatgtcttga ccaagccgct      4020
     tgggtcaacc aaggtcaaga agtttgcaac ggcgatgggg ttggcagctg tgccgatcaa      4080
     ggacgaggag agacagagtt gaattcgcga ggaggag                               4117
//
ID   Copia-184_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-184_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-207
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1500-1500 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 207 BP; 53 A; 51 C; 43 G; 60 T; 0 other;
     tgttgcgccc ttactgaatg ttacgctagg cgcatacgcg aatccacccc tgagagaaac        60
     aacactatac tttgacactt gtagttgagc tgaaatcgtt tcaataaaaa cacgttgtaa       120
     gagtacgcgg tcgtgcaaac ttaattgaga tccagatttc ccgtattttc ccctagtctg       180
     gttccgtcgg ttgattgtcc gcccata                                           207
//
ID   Copia-185_AA-I repbase;    DNA;    INV; 4021 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-185_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4021
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4021
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1455-1455 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4021 BP; 1285 A; 744 C; 1025 G; 950 T; 17 other;
     ggttatgggc ttagtaggct agtaacgaat caagtttgac aaaaaaaaaa tttttttttt        60
     tgcttgcgag atggatgcca aactaggaat tgagaaactt accaacggaa attatcagca       120
     atggagtttc gaagcggaaa tgttgttgga acgcgaggac ctttggaaat acgctgcaga       180
     ggatccaccg gttgaagtca cgactgtttg gacatcagga gaccggaaag ctcgggcaac       240
     tatttcactg ttggtcgaaa agcggcaama tccgttgata asggattcga agtcagcgaa       300
     ggaaacctgg gatcgtttga aagctcaaca tcagaagact acgatgtgct ctcgagtagc       360
     tctgatctgc caagtctgcg acaagaaact ggcggaatgt ggagatatcg aagctcacat       420
     ctacgatcta gaggagttgt tctcaaggct tcaaagcgct ggcaaggatc taggagagga       480
     cgtccaagta gcaattttat tgcgaagtct tccgatgtcc catgaacatg tccggacggc       540
     gttgttgatt ctgaaggatg acgagttgaa aatggatttc gttaaaggga agctcttgga       600
     gtactcaaag aagctacacg aagaagttga aaatggagaa tcggtcctga aagttaacgc       660
     cggaaagaag ttgacctgcc ataattgcgg caaaagaggg cacaagaaaa aggactgcta       720
     tgcaacacaa gattcgaaat ttggaaaaaa gaaccaaaag cctaacgaca aaccgaagaa       780
     ggaaaaaccc tatgcttttg tattggatga aatccgcgat cagaagaagg aatggattgt       840
     agattcaggt gcttcttcac atgtttgctg cgaccgtggt tttttcgata acatcaagcc       900
     aagtatagga cagagcgtgt tcatggcaaa cggaaaagaa gcgaagattc aaggcatcgg       960
     atctgttaca gttcacagcg tggacgaaca tggtgatcaa acagctatga cgttatctga      1020
     agttttgttt gtgcctggac tggagatgaa tctactatcc gtgagtaaac tgattatgaa      1080
     gggagcggat gtacgttttg atcagcaagg ttgtcggata atggccggga aagatgtagc      1140
     agctgtagca gtcaagcgtg gtggactgta tcgtttgaag sagcatggtg agaaggcgat      1200
     gatcatcggg catttgcaca ccaagaactg tcaacataca tggcacaggc gcttcggaca      1260
     tcgccacggt gcggtagtac agaacattat cgatcgaaaa ctggcgaacg gcattgaagt      1320
     gcaagactgt ggcgtacgtg aggattgtga atcttgtctc gtgggaaaac agactaggaa      1380
     acctttcccc aaaacgactg agaagaagac ttctgatgta ctggatctga tacatactga      1440
     cgtatgcggc ccgatggaaw ccaagtcgtt aagcggattc aggtatttca tcacactgac      1500
     cgacgatcat agcagatact gtatgctgta ttttatgagg aagaagtcgg aggtagctga      1560
     aaagattcaa cagtatgtca asatggttca aacgcagttc aatcgaacac caaaggtaat      1620
     ccgatcagac aacggtggag agtataccag cgtaaacttg aagcaatttt wtcgacagaa      1680
     cggaatttta ccgcagtaca caacaagcta ttcacctcaa tcgaatggag ttgcagaaag      1740
     gcgtaaccgt tatttaattg aaatggcaag atgcatgctg gcggatgcgg accttgatga      1800
     ccgattctgg gcagaagcaa tgaacacagc tgtatacttg caaaatgttt taccatcgaa      1860
     gtcagttgcg tcgacgcctc atgaagtatg gactggaaga aaaccggaaa tggstcatct      1920
     gagagtcttt ggmtgtcaag cttttgttcg cattccgaag caacagagga agaagcttag      1980
     tccagtatca agaaaattga cgttcgttgg atactccata gatcacaagg gatggcggtt      2040
     tatggatacg aagtcgctga aagtggtgat tagcagggac gcacatttcg tcgaactttc      2100
     aaacatcaaa gatcgagaat cggatccaca tascaacgag gcaaatgaag ctataaacga      2160
     gacaaacaat atgttggagt atgaattgaa aagttcctgt aatgagaatc agcwagtacg      2220
     tgacgmaaaa ataaatcatg acgaacaaaa tttggatgaa cgccatgaag aaattcgaaa      2280
     ccaaagcgac agcgaagatg aacaacagga ggagtttgaa tcagcagctg aaagttcttt      2340
     tgatacaacm ctgcaaaatg aagatcctga aatgaacatc gaaaccaatc gtagatctgg      2400
     acgttcaacg aagggtgttc cacctctccg gtatccagag ataagtggag ctgctgtaca      2460
     gatgacagat gaacctcgca cctacaatga agctatgaac ggttcggaac gagaccattg      2520
     gatgatcgct atgcaggacg agctgaactc actggtggaa aacgaaacat gggaaatggc      2580
     aacgctaccg ccaggaaaaa cggctgtggg aagcagatgg atttttaaga agaaaaccga      2640
     tcaagatggt gcattgatac gctacaaagc aagattggtg gctcaaggct tttctcaacg      2700
     gtatggcacc gattatgaag aagtgtttgc tccagttgtc aagcaaccga cgtttcgtat      2760
     actgttgacc atagccagtc aaaggaagct atttgtgaaa cacgtcgacg tgaagtcagc      2820
     ttatttgtac ggtgaacttg acgaagttat atacatgaag cccccagctg gaatgaaaat      2880
     tgaatctaac aacgtctgcc gattgaaaag gagtatttac ggattgaagc aagccggaag      2940
     agtctggaac aaaactctag acaacgttat gcaaaagatg aacttcctgc cttgcaagtc      3000
     ggatccgtgt ttgtacaaga gagagcgaaa cggagaaatt gatttcattg ctgtttatgt      3060
     agatgacatg gtgattgcct gtaagaatga agcggaattc maaaatatta tgtccaattt      3120
     gaagaagaaa ttcaagttgt cattgttagg aaaccttact tttttcctgg gaatgcaggt      3180
     tgatgaagtc gacggaaawt tctcaatcag tcaaactgcg tacatttcga aattagctgc      3240
     aagatttgga ttgagtgagg cgaaattatc gtccatcccc atggatccgg gatttgttca      3300
     gccaaaggag gagagaagcg aactactgcc aagtgctgat gactaccaga gtttgattgg      3360
     aggattgctt tacgtttckg tgatgacaag accggatata gcgattgcgg cttcaatttt      3420
     aggaagaagg gtcaacaatc ccacggtagc tgattggaac gaagccaaac gtgtagtaag      3480
     atacctcaac gccactaaag acttgaagtt acaacttgga acaacggccg agcccctgaa      3540
     atgttatgta gatgctgact gggctggtga ttgcaatkac cgaaaatcta gctccggcta      3600
     cctgattttc ttcggtggtg gccttgwatc atggggagcc agaaaacaga actgtgtagc      3660
     actatcatca actgaagcgg aattcgtagc gttggcagag tcctgtcaag aactgctgtg      3720
     gctgagaaag ctattggctg attttggtga agctactgta cctatcaaaa tactggagga      3780
     taaccagagt tgcatacatc aactggatgg agaaaagatc gagagaaggt caaagcatat      3840
     tgacaccaag tatgcattta ctaaggattt gaaaaagcaa aacataattt ctgtgcagta      3900
     ttgtccgacc gctgagcagt tagctgacat gatgacaaag ccgctttcaa gaataaagct      3960
     tcaacatttc cggacgaatg ctggactgaa ataatcaaga tataccacct gtgaggagga      4020
     g                                                                      4021
//
ID   Copia-185_AA-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-185_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-122
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-122
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1501-1501 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 122 BP; 35 A; 25 C; 18 G; 44 T; 0 other;
     tgttagatgt acacatcgtg gtagccttga taaatatcct tatgcgtcct atattgaaat        60
     acattcattc ctgtactgat cgttaaacta gcaacacgtg ttttattcct aactctctaa       120
     ga                                                                      122
//
ID   Copia-186_AA-I repbase;    DNA;    INV; 4088 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-186_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4088
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4088
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1456-1456 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4088 BP; 1205 A; 796 C; 1076 G; 1010 T; 1 other;
     ggttatgggc tcaggcacgg gtggcgcgaa cggatcgtgt gttatacgga tttgagctgc        60
     tgttttcaat cgcgatttct ttcgttagtg acgcgttcgg aagtttcctc gacgttagtg       120
     aacgacagtc aaaatgtcgg aaaaagtcgt gttcgaaaaa ctcggtgacc ataattggcc       180
     gctctggaaa tataaaatcg gcttggtgct tggtgaaaaa ggattggcag acgtcgtgaa       240
     gggaaacgtt ccagaagtgc cgacgaaaga atggctgcaa cgcgatggta tggcgcagtc       300
     tgtaatcggc ttggctctag aagattcgca gctgtgtcat gtgatggaaa aatcatctgc       360
     gaaggaaatg tgggattccc ttcaccaata ccatgaaagg cgatctatgt gtggcaaagt       420
     gttccttttg cggcgtttgt tgtcagtgcg attgacagac gacggcagta tggctgatca       480
     tttgagtcag atatcaatgc taatgaatcg cctagtcagc attggggaga agatggcaga       540
     tcactggttg gtggcgatta ttctatcaag ccttccagaa tcctataaca tgttaataat       600
     gtcgtttgaa tcgcgctcgg aggaggagct gacactagat tttgtgaaag gacgacttct       660
     cgacgagtgg cgtaggcggt gtgaagaaaa ccagctccca gaacagtcac agaaagtgtt       720
     aatgagtgga aaatcgaagc aaaagtgtca ttactgtgga aaagaggggc actatcggcg       780
     tgaatgcaga aagttgaaac aagatcagga gagaagaaag agtgaagatt atgaagaagc       840
     aaacgctaga agaagtgatt atcgacagaa agcgaacaaa gtggaatcag tgaatgacga       900
     agtttgtttt ggtttgctgg ataaggcatt cagggacgaa tggtatctgg attccggttg       960
     tacatcccat atgactggag atgccacaaa gcttagtttt gtagatgtga tgcgacgtga      1020
     aacgatttgt cttgctgacg gcaatgaagt ggtatcggaa ggcgttggca acgttaaggt      1080
     tgataccgta aatggtgatg gaaagcgagt gaatttaacg gtgaaacatg tcctacacgt      1140
     acctgcattg aagaacaatt tgttgtcagt cagtaaaatc actgacgaag ggttcgaggt      1200
     cgtgtttggc atatctgcct gcagcattgt gaagggaaaa aaagtgattg tgtcaggtga      1260
     gagatgtgga aatctttatc gtctgaagaa gccaaacgaa aagtctatgt tggcggaggc      1320
     tggccatcgc gatggctgtc agcatatttg gcatcgccga cttggccatc gaaaccacga      1380
     agacatcaat cgcatcgttc aggatgattt gggaaaagat ctcataatcc aagactgcgg      1440
     catccgatct gtgtgtacaa catgttgtca aggtaagcta acacgtttac cctttcctaa      1500
     acaatctatg acaagaacgg aacaaatact agatctcgtg cactctgacc tatgcggtca      1560
     aatggaagtt actactccca gcggtaaacg atacgttctg accctaattg acgattattc      1620
     ccgctactgt actgtatatt tgttggaacg taaatctcaa actgccgact gcatcgaaga      1680
     tttcattaag ttgatgcaga ctcagttcgg caaagtgccg aaagcgattc gcacagatgg      1740
     tggcggagaa ttttcggggt atgcgttcag gaacatgctt aaaaactatg ggattgaact      1800
     gcaacagact gcgccctaca gtccccaaca aaatgggcag gctgaacgta aaaaccgatc      1860
     gctaattgaa atgtcacggt gcatgttgat tgaagctaac atgaacaagc gctactgggg      1920
     tgaagcggta aatactgcta attatttact taatcgtttg ccagcaaaag caaccggtcg      1980
     tacgccttat gagctttggt atgataagaa acccagttat tcccatatga aagtcttcgg      2040
     ttcaccagca tacgtacata tcccgaaaga acgtcgtcgt aagcttgacg acaagagtgc      2100
     acgtttgatc tttgtaggct atgcagaagg cagaaaagct taccgctttc ttaatcctga      2160
     aacagataca gtggtcatta gtagagatgc aatgttttgc gaggagctta ctggtcagga      2220
     aacaattcga aacgtgattc ctgtggatgc cgttagcatc agccgagcag aaaacgagtt      2280
     aacaaaagag agaccagtac tcaggattgg agaagatgcg gaaatccttg cgagctgttc      2340
     acctcaacat gacgtcgtgc ctgtgttaga tagttcacag gaatatgata gtgcagagtc      2400
     tcatatcgag gaaatcgaac agagtgaatg tatgcagcga cgctcaaaac ggtccaacaa      2460
     gggaaaggct ccagtgcgat tgattgaaga agtcaacgtg atgagtggcc aggaggaggt      2520
     tgagccgtcg acgtaccagg aagcgatgag ttgtgaaatg aagaaacagt ggttaaatgc      2580
     aatggaggaa gaacttaact cacatcgaca actttgtact tgggaactaa cggaactacc      2640
     agctggacac aagcttgtag gaagccggtg gatctacaag atcaagaagg atgcgagtgg      2700
     tcaaattatt aagcggaaag cccgcttggt agcccagggc ttcaatcaaa agccaggtat      2760
     tgatttcatc gacgcttatg ctccggtggc taagcaagcc acgcttaaag cactgcttgc      2820
     catagcaagt caacggaaaa tgatccttaa acaccttgac ataaaaaccg catatttgaa      2880
     cggcgacctc agtgaagtag tacatatgcg gcaaccaccc ggattcaccg aaccaggaaa      2940
     ggaagcgctg gtgtgccgtc ttcgaaagag catatacggt cttcgtcagt cggcgaaatg      3000
     ttggaatgat cgttttgatg agtcattgag aaagatgggg tttcttccaa ctgtagcaga      3060
     cccgtgtttg tacacccgtg agcggaataa gaagagggtc tacattgtag tttatgtaga      3120
     tgatgtgatt gtggccagtg acgatgaaaa cgaacttgac tccgtgtatg aagaatttaa      3180
     cagctacttc gaaacaactg cactcggaca gctaaagtac tttctcggtt tagaagttga      3240
     aagagacaaa ggtggagtat acagtgtcag tttgaaagga tatatcaagc aaacagccga      3300
     acgcttcggc cttggcgaca gcaaacctgc tcgcactccc atggatgaac aatatgctcg      3360
     aggagaatca gaaatcatac tgctgcctaa taacattgac ttccgcagtc tggtcggtgc      3420
     tcttctttat gtagcagtga acgcgcgccc wgatatcgct gcagcagttt ctgtgttagg      3480
     ccgtaaagtt aatcaaccat cacaggctga ctgggtggcc gctaaaagag tagtgcggta      3540
     tcttcgaggt acagttgaca agaagcttga attctccggc tcatcgctcg acctgattgg      3600
     tttcgttgat gcagattggg ccggcgatca tacaacgcgc aaatcgacct ccggatacgt      3660
     ttttgtgatg tgcggagcag ctatttcatg gaaaagtcag cagcaaagtg ttgtcgcact      3720
     ttcaactatg gaatccgaat atatcgccct ttgtgaagct acaagagaag ctatttggtt      3780
     gcggcaattg ctactagatc ttggagtacc tcagctgaat ccaactttgc tatatgagga      3840
     caaccaatca tgtattgcct tcgtgcggtc gcaaagaacg agtaagcgta caaaacacat      3900
     cagtgttcga gagatgttcg tcaaggattc atgtgataaa ggcattgttc aactgcaata      3960
     tttgtgttct gaggaaatga tagctgatgc gctgacgaaa cctattgggc cgaccaagat      4020
     cggtctattt tcgcaggcta tgggactaat aggaagttct aaaacaacga gtgatgatta      4080
     aggaggag                                                               4088
//
ID   Copia-186_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-186_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-230
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-230
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1502-1502 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 230 BP; 62 A; 58 C; 35 G; 75 T; 0 other;
     tgttgtactg tgtaatccac ccctcgttgt cagcactcat aacaataata ctggcaacac        60
     tatacatact tcctatgacg tattttgttt gatttagatt ccattgtcaa ttcattctaa       120
     aataaatcgg caagaagtgc agacgcgttt gatttaacag aaactgttcc atgtgttatt       180
     ccgcctaatc cgtccgattc cgtcccgact agtttccacc tctgccaaca                  230
//
ID   Copia-187_AA-I repbase;    DNA;    INV; 3973 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-187_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3973
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3973
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1457-1457 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3973 BP; 1198 A; 822 C; 1056 G; 897 T; 0 other;
     ggttgtggac ccagtaagag ctaggtaaag agaccgagag cagcaatacg aaatggattc        60
     gaagctcggt atagaaaagc tgacaaacga gaactacccc cagtggtcgt ttgaggcgga       120
     gatgttatta gagcgtgaag atctctggaa gtacgtcgtc gatgcgactc cgaacccggt       180
     cactgcagcg tggacaacag gggacaggaa ggctcgagcg acaattgctt tattggtcga       240
     gaagcgtcaa catccactca tccgagacgt caagactgcg aaggaaacct ggaatcgatt       300
     gaaggagcag caccagaaga ctacaatgtg ttcaagagta tcgctcatct gccaagtttg       360
     cgataagaag cttccagaag gaggagatct tgaagcacat atgtacgaac tggaggaact       420
     gttttcaaga cttcaaggtg caggaaaaga cctgggagaa gatgttcaag tggcaattct       480
     tttgcgaagc cttccggcat cctacgaaag catccggaca gccttactgg ttctgaagga       540
     cgatgaactg aagatgtctt tcgtcaaagg aaaagttttg gactacgccc ggaagctaca       600
     ggagaatgat gctgtcgtgg atgaatccgc gtttaaggta gaagcaaaga agatcatctg       660
     tcatttttgc ggaatgaaag ggcacaagaa gaaagattgt caagccttca aaacatcaaa       720
     ccatcccaac aaacctacga acaagaactc gaaactgaag cacaatcctg gcactggtaa       780
     gagcaagcct catgacaagc tgtacgcgtt cgttcttgat tctgctgatc gaaaaagggt       840
     tgactggatc gttgattccg gcgcgacgtc tcatgtgtgc tgcgacagaa gtttcttcga       900
     agaagtgaag ccaagttcgg agaagagtgt ttatctcgca aacgggaaag aggccaaagt       960
     ccaaggaatt ggtacggtga agattttctg cgtagattcc aacggtgatc ggacgattat      1020
     agccttatcc gatgttctct acgtccctgg attggaaatg aacctcatct cggtgggtaa      1080
     gttgatcgga aaaggcgcaa acgtgcagtt tggaacaaac ggttgccaaa ttttgtccaa      1140
     gacggaagta gtagctgtag cagtcaaaca tggaggcctg taccggttga agatccatgg      1200
     tgaacgagcg atggttgccg gacagaatca caccgagagc tgccagcaca cttggcatag      1260
     gcgttttgga caccgggatg aagccgtcat ccaacaaatc atcagcaaga atttggcgag      1320
     cggaatacag gtacgtgact gtggaaccaa cgaactttgt gaaccgtgtc tcaaaggaaa      1380
     gcaagctcgg aagccgtttc cgaagtccac cgagaagaag tcaacggcta cgttggacct      1440
     gatacacacc gacgtttgcg gccccatgga tgcgtactca ctaagtggtt tcaagtactt      1500
     cgtgaccctg atcgatgacc atagccgctt ctgtgtgctt tattttctga agaaaaaatc      1560
     ggaagttccg gagaaaattc aagaattcgt acgaatggtc aagacacaac aaggtcgagt      1620
     tccgaaagcc atacgatcgg acaatggtgg agaatatgtc agtgcagagc tgcggaagtt      1680
     ttacaagcaa aacggaatcc aagcacagta cactacaagt tactcgccgc agtccaatgg      1740
     agttgctgaa cgaaaaaacc gatacctgtc cgaaatgaca agatgcatgc tggctgatgc      1800
     caaattggac aaccgattct gggcggaggc aatgaatacg gcggtttatc ttcagaacgt      1860
     acttccttcg agagccgttg atgtcactcc acatgaaatt tggtacggac ggaaaccaga      1920
     tatgaagcat ttgcgtgttt ttggagcaga agcatatgtg catgtcccga agccactccg      1980
     gaagaagctg agtcctgttt cgcagaaaat gacgttcgtt ggatattcgg tggaccataa      2040
     ggcgtggagg ttcctggaca tgaaatcgct gaagttggtt gtaagccgag atgcggactt      2100
     catggagctc aatgcaggag gacatcaggc caatcaagac atcgcgagaa gaccggaagt      2160
     ttgggaatat gacctggatg agcagaaaca agaactgatt cctgttcagg aagatcctgg      2220
     agcagatgtc gtagatcagg atgaacgaga cactgatgac aatcttcagg aggagtttga      2280
     atctgctgcc gaatcgtcgt tcgaagacca ggaggcggaa gtcactatca caccaaggcg      2340
     ttcggatcga attaccaagg gaattcctcc acttcgttat caagaaatca ccggcgcggt      2400
     cgttggtaat ttgcaagatg agcctctttc gtacacggaa gctgtcagtg gtaccgagcg      2460
     caatcagtgg gttgctgcga tgcaggaaga attggactct ctggcggaga atcggacgtg      2520
     ggaaatgact gagctaccac ccggaagaaa agccatcggt tgccgctgga tttacaaacg      2580
     caagacgaac gaacatggtg aaattgtacg ctacaaggct agattagtgg cccaaggttt      2640
     ttcccagcgc tatggcttgg actatgaaga agttttcgct ccggttgtaa agcaagccac      2700
     cttccggatc ctgttgactg ttgcttctcg tgaaaacctg attgtcaagc acgtggacat      2760
     taagacggcc tatttgtacg gtgagttgca agaaaccata tacatgaagg tacctccagg      2820
     aatcgaacaa cccagttcca acacagtttg ccgattgaga agaagcttgt atggcctcaa      2880
     gcaagctggt cgtgtttgga ataaaacgct ggatgaagta cttcggagaa tgggattcgt      2940
     tgcgtctacg gcggatccat gtttgtacaa gagagttacg aagaagagga acacgttcat      3000
     cgcagtttat gtggacgaca tggtaatcgc gtgcagcagc gaaaccgaat ttcaagaaat      3060
     tatggctact ttggagaaga agttcaaaat gtcgctacta ggaaatctaa aattgttcct      3120
     gggaatgcat gtggagttca acaatggctg ttacatggtg agtcagaagg cgtatatttc      3180
     caagcttgcg gagaaattcg gccttcaaaa tgccaagccg tcagcaatcc ccatggaccc      3240
     aggatatatc caacgaaagg aggaggattc tgaagcacta cccaggagtg acgaatatca      3300
     aagccttatc ggagcactat tgtacgtatc tgtgatgacc agaccagaca ttgctatcgc      3360
     tacatcaatc cttgggagaa aagtgagcag accttcttat gctgattgga cagaggccaa      3420
     aagagtgtta cgctatttga tgaccacccg ggacttgcga ttgaatctag gcgctagcaa      3480
     ggattatctg aagtgtttcg tggacgccga ctgggcaggt gatgtcagcg acaggaaatc      3540
     gaactcagga tatctcgtat atttcggtgg aggattgatt tcatgggccg ctcgcaaaca      3600
     gaactgtgtg gcgttatcat caaccgaagc tgaattcatc gctttagctg aagcctgtca      3660
     ggagttactg tggttgaaga aattactgga cgattttggt gaaaacaatg agccgatcaa      3720
     gattatggaa gataatcaaa gttgtataca ccaactggag aacgaaagag ttgagaaacg      3780
     atcaaaacat attgatacga aatacgcatt cacgaaagat ttgaagaaaa acaaagttat      3840
     cgacgtagaa tattgcccaa cgggtgaaca aatagccgat atgatgacga agcctttatc      3900
     aaaaactaaa ctacaaacct tcagagatgc atctggattg aaattgatca agaaaactac      3960
     gcttgaggag gag                                                         3973
//
ID   Copia-187_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-187_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-146
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1503-1503 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 146 BP; 47 A; 31 C; 20 G; 48 T; 0 other;
     tgttgaagca tgtgcatcgt agtcaccttg caatccagaa tactgaagat ctcaatcata        60
     gtagtcatta tataataatg tcagaaataa attcattcct tccattaccg ttagcctagc       120
     tacacgcatt ttccttaatt ctaaga                                            146
//
ID   Copia-188_AA-I repbase;    DNA;    INV; 3950 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-188_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3950
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3950
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1458-1458 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3950 BP; 1100 A; 872 C; 1122 G; 854 T; 2 other;
     ggttatgggc tcgtccggca aggattcggt gcacggtatc cctcaatacc aaggaggtcc        60
     tggattccat aactggagtt ttcgtgtacg tgcgtacctg gacgctatgg gagtggaaca       120
     taccctgacg aaggatgccc cggaagaagc tgctgaaaaa gcgaagttcg acgaggcgga       180
     caagaaggca aagtcgtggt tgatcgggtt cctgggagat gagtgcctgg agacggtacg       240
     cgaagcaaaa acggctaagc atatgtggca agcattgcaa aagagccatg ccacgaaatc       300
     gttagcgacg cagaatctgg tccggaagca actcatgcgc ttgaagctac aggaaggcga       360
     aaccatgcgg aaccatttgg tgcggttcga cgatctgatc cggcaactac gagtatcagg       420
     cgcggaactg aaggaaccgg atatggtgtt aacgctgttt ggtacgctcc cggaaaggta       480
     tgacccgttg ataactgctc tggagaacct cggtgacgat aacctgacgt tggacgtagt       540
     gaagcaacgg cttctgggtg aagaagtcaa gcagctcgaa cggcaacagg acagcacgat       600
     cgagaaatct acggcgtttg caggtgagaa gaataaggat cgaccgaaga aattcatcgg       660
     aaagtgccat aagtgcggca agaaagggca catgaagaag gactgccggc agaagaaccc       720
     cagtgaagcg aactcggcta ctggatctgg aagcaaggcg gtaagtttta tggctggtcg       780
     cacaggtgaa gcccgaaata gtgacggacg attaagcttc aagctagaca gcggatcaag       840
     cgatcatcta gtgaacgatg atgccgtgtt ctcgtcgttg agcaagctat caagtcccat       900
     catcatcaac gtcgcgaagg acggtsaaac tttggaagct cgaaagaaag gaaccatcga       960
     aggtgtgagc aacaagggtg ttcagatgac gatcaacgaa gtcctgtttg tgccggagct      1020
     aagagacaac ttgatgtctg tcaagaaatt ggccaaggct ggaatctcgg tactgttttg      1080
     cggtaagcaa gctaccttgc agaaaaacaa cacagttatt gctacagcgt acttgaaagg      1140
     aagtttgtac gagttggatg tcaagcttca agcgtcttct gcgaatgtat gtcaagctga      1200
     ggtgagtgag ttgtggcatc gtcggctggg tcacctgaac caacaagcaa tctcgaagct      1260
     ggtgcaacac aatatggttg aaggtatcag aacgaaacca cagaagatcg gattttgtga      1320
     accatgtgtg cagggcaagc agtgccgtga gcccttcgac ggaactcgtc aacgtgcaac      1380
     tcgggttctg gagagaatcc actcggacgt atgtggaact atcgaccctc cggcgtggga      1440
     tggctcacgc tatttcgtat ctttcatcga tgactacagc catttttcgg tgatttatct      1500
     gatgaagaaa aagagtcaag ttttcgagcg gttccgagaa tacgaagcaa tggtgactgc      1560
     ggcttttgac aagaaaattt cgaagctgac ggtggatcaa ggcacagagt atggatccaa      1620
     tgagcagaag aaatggtaca agagcaaagg aattcaaatc gaggcgacgg ttgcatattc      1680
     cccgcaacaa aatggggtgg ctgagcggtt caatcgaacg ctcatcgaaa aggtacgtgc      1740
     tatgcttata gattccagat taccgaaaaa gatgtggtgt gaagctgcct tgactggtgt      1800
     gtacctaatg aatcggagtc cgacggcagc cctgtcggtc cagaagaccc ccgcggaact      1860
     gtggctagga gtgaaaccca atctggagaa gcttcgaatt ttcggatgca gagccttcgc      1920
     ttggatacct ggtcagcaac gaaagaagct ggacgcaaaa agttttgaag cggtgatggt      1980
     cggctacgcg ccgaatggct atcggctctg gaatcgaact catcggaaga tcatcgtggc      2040
     tcgtgacgtg aagttcgatg aaggtcgttt tccgtatgaa gttgacaatg aagccaaaac      2100
     agattcaccg ttggtagtcc aatgttctta cgataaagag ggggatgatg aagccgaagc      2160
     cgaacccgtt acgcaagaac cagaagtagc aagagagatt gaagaacaag accagcaaga      2220
     tctgctagac cagcttgatg attccgatga tgagatggac gaggcaacag catcggcgct      2280
     cccatcgcaa ccagaacacc acgagtccgg aggacaagcg atggtgaggc gcagcgatcg      2340
     ggagcgcaca cttccgggta agttgctcga ctatttcgtt ggttacggag caatttctgc      2400
     tgtcccattg tccacagatg tacccaaaac gtttggtgaa atcgcccgcc gagatgacma      2460
     agacgattgg atgcgtgctg tggcaaacga gttggagtcg ttgaagaaga acaatgtctg      2520
     gcaacttgtg acctgcccca aggacgtgaa accgctcaaa tccaagtggg tgtttcgact      2580
     gaaggaggac gaaaacggta gaccggttcg ctacaaagcc cgactggtgg cgaaggggta      2640
     tctccagcag caaggtcacg actacgaaga gacgtatgct ccggtggctc gcctggcaac      2700
     catccgcacc gtattggcag ttggcgtaca tcggcgatac tacttccacc aaatggatgt      2760
     tcgtaccgcg tttctccacg gtcgcttgaa ggaaaccatc ttcatggaag tcccggatgg      2820
     cgtagctgcg aaacaaggtc aagtctgtcg gttggtgaaa tccttgtacg gtttgaagca      2880
     atctcccaga tgttggaatg agcgattcaa cgaggcgata gtcacaatgg gcttcaagcg      2940
     ttcacaacac gattattgcc tgtacaccaa gctggatgac aacgacgagc taatactgat      3000
     cctgtacgtt gatgatctcc tggtggctgg acgcaatcag aaatcaattt caaagcttaa      3060
     gaaggaccta gcatcgaagt ttgaaatgtc cgactgtggg gagctccggc acttcttagg      3120
     catgaaggta gagtacaatc gcgacgatgg gcagctgaag ctttctcaag atgccagcat      3180
     cgaaaagctg gtgacccgtt ttggaatggc tgagtgcaat cctgctcgta caccgatgga      3240
     aaaaggcctg atgcttgatc gaaatggacc ggacgcaaac caaccatatc gtgagttgct      3300
     gggatcactg atgtacgtga tgctcagcgt tcgaccggac atttgttatc ctgttggcta      3360
     cctggggcgt ttccagcaac agccgaccgt cgagcattgg caagccctga aacgaattgt      3420
     ccgttacttg caaggaacaa agaagctgat gttgcagttc aagcgtaacc caactagtag      3480
     tccattggtt ggatacgttg acgccgactg ggcgtcagat actgaagacc ggaaatcggt      3540
     aagcggttac ctgtttcaag tatttggatc cacggtgacc tggtgtagta agaagcaaac      3600
     cacggttgca acttcgtcta gcgaggcgga gtacatcgcg ctcagtgcag cggttgcaga      3660
     atccttgtgg ctgcaaggaa tacttgaaga ccttcaagaa tccaccaaac ctgttaccct      3720
     gtacgaggac aaccgtagtt gcatttgtat ggcgaagaac ctggagacaa aacgcaccaa      3780
     acatatagat gtcaagcatc atttcgtgcg tgatcatgta gcttccggga tgcttaaaat      3840
     tgaacccatc aagacgcaga atcaattggc ggatattttt acaaaggccc tggagttcag      3900
     ccggttcaag accctgagga tgaagattgg attatctgat tgagaggggg                 3950
//
ID   Copia-188_AA-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-188_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-167
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-167
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1504-1504 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 167 BP; 46 A; 42 C; 25 G; 54 T; 0 other;
     tgtaatctaa gtagctcaac aatcaagata tccttggcta cgcccccggc cctagtaact        60
     aagagtttgt tatttttcat aactgttcac ttgctaataa acctccgttg aagtcagacg       120
     ctttccaagc ttattccatt cttttgaaac ggtaccccat tctaaga                     167
//
ID   Copia-189_AA-I repbase;    DNA;    INV; 4033 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-189_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4033
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4033
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1459-1459 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4033 BP; 1148 A; 760 C; 1110 G; 1015 T; 0 other;
     ggttatgggc ccggcggagc agatgtttga agtgcgcgaa atcggattta aagtcgttta        60
     aagttgcgtc ggattatcgt atcggatcgt tttctttgcc atggcaaccg gtgagagaat       120
     ggtgtccttc cccaagctga atgggacgaa ttacgacaat tggagcttcc ggatgaagct       180
     gctccttttg aaggaaggta attggaccgt gatcagcgag gcgaagccag aagaagaatc       240
     agcggattgg aacagcagaa atgaccaggc gatggccacg attggtttgg cagtggagga       300
     cagtcaactg atccacattc ggaaggccaa atcagctgca gaggcatgga aaaacctgga       360
     gaccttccat gtcaagcgta cacttacaac gaaggtgtca ctcatgcgga aaatctgccg       420
     tctcagactt gaaagaggcg gagatatgga gggacacata aatcgtctga cggagctctt       480
     cgataaatta aacgatttgc aagaggacaa gatactggac gatcactggc tcgttgctat       540
     actgttcagc agcttacctg atgagtacga gacgctagta acagccctgg aagcacgccc       600
     agatgaagat ttgacactta acctcgctaa aggcaagttg ttggatgagt ggcaaaagcg       660
     gaaaaatcgt tctgaagacg atgacgatcc agagacggca ttgtatgccg gatcgagtgc       720
     aagtagcgtg aagtgttttt tctgtaaaaa gtccggacac aaaaaatttg agtgcgagaa       780
     atttaaggat tggaagaaga agaaggacgt aaagcaagaa gaagaaacgg ttcacagtgc       840
     agtgaatgtg caggatgaag attgtcagtg ggcatttgtc acagcgagtg ttggctcagc       900
     tggagaactg tggctgcttg attcgggtgc tacatgccac atagtgaatc atcgtgattt       960
     tttcgattcc ctcgatgaat ctgtgcggga agtggtatac gtggctaacg gtgcgaaggt      1020
     ggtggctaga ggccgcgggt gcggaatgat gaaagtgatg gatgacagaa agagataccg      1080
     gatcatcaat gttgaagatg ctctgtacgt tccggaaatg aacactaatt tgttgtcggt      1140
     caagaagctt gtgcgtaaag gttttgtggt gacatttgac ggtgatggag catcgatcgc      1200
     tcgtgacggt gttatcggtg catacgctga tctcaagcac aatttgtttg tcatgcgagt      1260
     ttccggtgaa tctgcatcta ttgcacaaaa ggacagtgac tgtgttcacg gttggcaccg      1320
     tcggttgggc cacagaaact gcgatgcaat tttgaaattg tgtgaattgg ctaacgggtt      1380
     cgatgtcgca gagtgcaagt gtgatgaagt ttgtgaagtg tgcataaaag gcaaaatgca      1440
     tcgaagcccc ttcccgaagg agtctgaagg caagtcgtca gcagtaatgg atctggtgca      1500
     tacagatatt tgtgggccga tgagaacggc gactttgggc ggtcggaagt actttctcac      1560
     cttcacggac gactacagca aatacactgt ggtttacata gtggggagaa aatcggaaac      1620
     gttggagaaa attaaagagt acgtggaaat ggcaaaaact caatttggac gaaagccaaa      1680
     agttctccga tctgatcgag gaggtgaata catcggtaaa caggtgagaa actatctcaa      1740
     atcaaatggt ataattagtc agcttacagt gccatattcg ccccagcaaa acggggtggc      1800
     tgaaagaaaa aatcggtacc ttgttgaaat ggcacgatgt atgcttattg atgctcagtt      1860
     ggatgatcgt ttttggggag aggcggtagt tacggcaaat tacatgcaaa atcgcttacc      1920
     gtctcgctcc atcggatgta ctccccacga gcgatggttt gggtgtaaac cgaatttgag      1980
     tgatatgaaa ccattcggta tagatgttta ttgccatgtg cccaaggaaa aaagaggaaa      2040
     actggacgaa aaagcggtga agttgaaatt tatgggatat tgtgagggaa ctaaaggata      2100
     tcgtttggta gatgctcgga ctgggaaagt gactataagt agggatgtcc gtttcctaaa      2160
     tacattcgat cctattactg agcctgaagg aaatgaagtg gttatccctt taaatgtacc      2220
     gctccctcgt tcacatccta ttgtacgtga tgataatgga gctgtaatag acgaccccga      2280
     tgatttttgg gttgatactg aatgtgtttt ggatgatgac cctaatgatg acgaaatttt      2340
     tcaggatatc tcgaatcagc cgcttgaaga cccgttagag ctggcagtgc gccggtctga      2400
     acgaacaaat aagggtgttt tgccgcaaag atacgcatgt acagcagaga aatcagagat      2460
     cgaaccacgg aatttcactg agtcccaaaa cagtgctttc aaggacgaat ggcggcatgc      2520
     catgcttgag gaattacagt caattaaaac aaatgacacc tgggatgttg ttgatctgcc      2580
     accagggaag cgagcacttg gaagtaaatg ggtgtataaa ttgaagcggg attctgatgg      2640
     taacattaag cgtttcaagg cccgacttgt tgctcaaggc ttcaaccagc ggtatggaag      2700
     cgaatacgac gaaatctttg cgcctgttgt acgattgaca acgtttcgaa cactcctgtc      2760
     agttgcagcg aagagaggga tgacagtcca acagtatgat gtgaagtctg ctttcctcta      2820
     cggcaacctt gaggaggaga tttttatccg ccagcctccg gggtttgttg tcgatggcgc      2880
     ggaaaacaag gtgtgccgtc ttaagaagag tttgtacggg ctaaagcaag ctgctcggtc      2940
     ctggaacaat cggcttcatg aggttttggt caacgaagga ttccaaagat gcgattcgga      3000
     tccatgtctt tatcgcaaga aagttggaga taagctgtgt ttcgttcttg tttatgtgga      3060
     cgatttgatc atttcgagtg atgataaagc tatcgtggac tctctggagc aaactttgaa      3120
     gaacaatttt gccattagta gtctgggatc cattcggaat tatcttggtg ttgaagtaga      3180
     gcaggatgca ggaggagact actatataag ccagcaacgg tatatcgccg atgtcgttgc      3240
     aactgctggt ttaggggacg cgaaagcatc agcgatacca cttgataccg gatatgagaa      3300
     acaagagcaa gattcaaact ttctgccgga caatcatgaa taccaacgaa tgattggcaa      3360
     gttgctgttc ttagccgtta attctcgtcc agacatcgct gcatcggtat caattcttag      3420
     tcgaaaaaca agcaagcctt ctcaacgaga ctggaacgag gtgaagagga tagtacgcta      3480
     ccttaaagga tccgcgaatc ttcgacttcg cttgagcaac aaaactgatg aatcgggact      3540
     ggttgggtat gctgatgccg attgggcgga gtgtcgtgat ggtcgtaagt cgaatagtgg      3600
     tttcgtgttt cagtacaatg gtggtacgat ttcttggtcg tgtcgaaaac aagcctgtgt      3660
     atcactttcg acagccgagg ccgagtttgt ggctcttgca gaggcttcac aagaagcgat      3720
     atggcttaaa cggttactgg tcgacttggg agaaaccgtg acattagttc tcatgaacga      3780
     cgataatcag agctgtcttc gaatgctgga ctgtgacaaa ttcagcaacc gcaccaaaca      3840
     tatcgacacc aagtattact tcaccaagga tctaaaacta actggagtaa taaagtatca      3900
     atattgtccg agtgaagtta tgcgagctga tcttctgaca aaaccgctcg caagaatccg      3960
     gcttggggta ttgagaaagc tgtgtggcct cgatgccacg agttgaagta acatcgcctg      4020
     tgttgaggag gag                                                         4033
//
ID   Copia-189_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-189_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1505-1505 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 241 BP; 66 A; 48 C; 38 G; 89 T; 0 other;
     tgttgttcta gcaacacaga tcgtatgagc aaacataaaa taataatagt acggttttgt        60
     tcagtgcata tttttctgac gtttatcttc acttgttttt tcattctcga acattccaaa       120
     ataaaatgtt accgcgtgtc gatgtgaaaa gttccttttt tccgttttaa ataaatacct       180
     ccgttttttc gtgataaact gcgtgttttc cgagtgatcc gaaacctgac tctgcccaac       240
     a                                                                       241
//
ID   Copia-18_AA-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-18_AA_;
KW   Copia-18_AA-I; Copia-18_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-148
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 946-946 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 148 BP; 42 A; 37 C; 19 G; 50 T; 0 other;
     tgacatcgaa gcaacctgct agtttggacc aatcgtttat ctgaacacag taaccttggc        60
     ttctttgaca tcttttactt tttatcattc tcaaaccaac ctctgaataa accacacgtt       120
     ttaattaaac gagctctgcg ttcattca                                          148
//
ID   Copia-18_CQ-I repbase;    DNA;    INV; 3185 BP.
XX
AC   AAWU01015423;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-18_CQ_;
KW   Copia-18_CQ-LTR; Copia-18_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 351-351 (2011).
XX
DR   GenBank; AAWU01015423; Positions   69169   65985.
XX
CC   Positions [1540-2064] - Integrase core
CC   'AGAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..2835
FT                 /product="Copia-18_CQ-I_1p"
FT                 /translation="MADPKTGITRLNEANWSTWKLRMEALLDTEELWDVIE
FT                 EEVPAAEQQDAVWTRKDRKARGHLIVALEDSQLRHIKGKVHARDIFGALKA
FT                 HHEQATRSVRVSLLKKMCALILPDGGDLVAHLREFEVLFDRLEAAGTSLDT
FT                 DTLICMLLRSLPSSYDGVVTALDCLADDDISLEIVKAKLEDEYSRQQERKG
FT                 GSRQVEKAMRTAESKNRKKPPKCFNCGQLGHFKGNCPKLGGDQKKGGSSPK
FT                 PDGGGGAKAKAAQNDARGVAFTVGGKQTACWVIDSGASAHMTNDREFFESL
FT                 REFAGGNITLADGKKTEIQGEGSGTVFGIDGEGRKVKLDVQEVKYVPGLST
FT                 NLISVGKLANKDYSVVFDKVSCSVVSDSKVIATGGRHGGLYYLRQAEEESM
FT                 VAAERRHKVDCQHQWHRRLGHRDWAAAEKLVKDELATGMKVTDCGLRLECE
FT                 CCMEGKSARLPFPPVIDRKSSKVLDIVHTDLWGPIKTVTPSGNRYVMTMID
FT                 DYSRFTVIYLLKQKSEAADRIKEYVRWVENLFGRKPRVVRSDGGGEYDNRE
FT                 LRTYYKAEGIKPQFTTAHSPQSNGVAERKNRSLTEMATCMLNDAVLDMRFW
FT                 GEAMITAAYLQNRTPSRSIQGTPYELWWGRKPDLKHLRVFGSEAYVHVPGV
FT                 NRGKLDSKARKLVFVGYAFEQKAYRFVDVETDKITVSRDARFLELGNGTST
FT                 VEWSTDNPDEEIQLKPFVVKKEELKEEDAIEEDTAGDDVAGGQISESDDEE
FT                 FQEAESTPNASPRRSTRSNLGTRPRYLDDFELENAVGIAACAVEEPVDHKE
FT                 ALKEPVWRTAMLDELESHQKNGTWKLVQLPEGRKAIGSKWIYKVKRDENNQ
FT                 IVKFKARLVAQGYAKHHVGEPSPTLRDAFIDEE"
XX
SQ   Sequence 3185 BP; 790 A; 788 C; 1061 G; 546 T; 0 other;
     ggttatgggc ccagaagtgg acgagttttg gtgaaagagg acgattccac aggtactcgc        60
     tggtgctccg cgtcgcgcgc ggtgcacggg aaaaagtgag gttggaatcg gggcgaaagt       120
     ttgttcgcgt gttggacaaa agtgcgtgca aacaaaaaga caaaagtgct agtaaagatg       180
     gccgatccga agaccggaat cacccggttg aacgaggcca actggtccac gtggaagctg       240
     cggatggagg cgctgctgga tacggaagag ctgtgggacg tgatcgagga agaagtcccc       300
     gcagcggagc aacaggatgc tgtctggacc cggaaggacc ggaaggcgcg aggtcatctg       360
     atcgttgcgt tggaggacag ccagctgcgg catattaagg gcaaggttca cgcgcgggac       420
     atcttcgggg ctctcaaggc ccaccacgaa caggcgacgc gctccgtccg tgtttcgctg       480
     ctgaagaaaa tgtgtgcgct cattctcccg gatggcggcg accttgtggc gcatctgcgc       540
     gagttcgagg ttctcttcga ccgtctggaa gcggccggaa cgtcgctcga cacggacacc       600
     ctgatctgca tgctgcttcg aagcctcccg tcgtcgtacg atggggtcgt gaccgcgctg       660
     gattgcctcg cggacgatga catttctctt gaaattgtca aggcaaagct ggaagatgag       720
     tacagccggc agcaggaacg gaagggaggt tctcgccagg tggagaaagc gatgcggact       780
     gcagaaagca agaaccggaa gaagccgccg aagtgcttca actgtgggca gcttggacac       840
     ttcaagggga actgcccgaa gctcggcggc gaccagaaga agggcggaag ttcgcccaag       900
     ccagacggtg gtggaggcgc gaaggcgaag gccgcgcaga acgatgcgcg gggcgtcgcg       960
     ttcaccgtcg gagggaagca aactgcctgc tgggtgatcg acagtggtgc cagcgctcac      1020
     atgaccaacg accgggagtt cttcgagtcg ctgcgtgagt tcgccggtgg caatatcacg      1080
     ctggcggacg gtaagaagac ggagatccag ggagagggca gcggaacagt gtttggcatc      1140
     gacggtgaag gaagaaaagt gaaactcgat gtccaagaag tgaagtacgt gccgggactg      1200
     tccacgaacc tgatctcggt cgggaaactg gccaacaaag actacagtgt agtgttcgac      1260
     aaagtgagct gttcggtagt gagtgacagt aaagtgatcg ccacgggtgg acgccacgga      1320
     gggctctact acttgcgcca agcggaggag gaatcgatgg tggccgccga acgtcggcac      1380
     aaagtagatt gccagcacca gtggcaccga cggcttggtc atcgcgactg ggcagcggcg      1440
     gagaagcttg tcaaggacga gctggccacg gggatgaagg taacggactg cggtctgaga      1500
     ctggagtgtg agtgctgtat ggaggggaag tctgctcggc ttccgtttcc accggtcatc      1560
     gaccggaagt cgtcgaaggt gctggacatc gtccacaccg acctgtgggg accgataaaa      1620
     accgttacgc caagcggtaa tcggtacgtg atgacgatga ttgacgacta cagccgcttc      1680
     acagtcatct acctcctgaa gcagaagtcg gaggcggccg atcggatcaa agagtacgtc      1740
     cgttgggtgg agaacctgtt tggtcgcaag ccgcgggtgg tgaggtcgga tggaggggga      1800
     gagtacgaca accgtgaact ccgcacctac tacaaggcgg aagggatcaa gcctcagttt      1860
     accaccgcgc attccccgca gtcgaacggc gtcgctgaac gaaagaacag atcgttgacg      1920
     gaaatggcca cctgcatgct gaacgacgca gtgctggaca tgcgattctg gggcgaagcc      1980
     atgatcacgg ccgcgtacct gcagaacaga acgccatcca gatcgatcca aggcacccct      2040
     tacgagctct ggtggggacg aaagcccgac ttgaaacatc ttcgggtgtt cggcagcgaa      2100
     gcgtacgttc atgtcccggg tgtcaatcgt ggcaagctgg acagtaaggc aaggaagctg      2160
     gtgttcgtcg ggtacgcatt cgagcaaaaa gcgtatcgtt tcgtagacgt ggagacggac      2220
     aagatcaccg ttagccgtga tgccagattt ctcgagctgg gcaacggcac gtcaacggtg      2280
     gagtggtcaa cggacaaccc agatgaggag attcagctga agccgttcgt cgtcaagaag      2340
     gaggagctca aagaggagga cgccatcgaa gaggacacgg ctggtgacga tgtcgctggc      2400
     ggccagatca gcgaaagtga cgacgaagag tttcaagagg cagaaagcac cccaaacgca      2460
     agccctcgtc ggtcgacaag atcgaatctt ggtactcggc cgcgttatct ggatgacttc      2520
     gagctggaaa acgctgtcgg gatcgcggcg tgcgctgtgg aggaacccgt cgatcacaag      2580
     gaagcgctga aggagcccgt ttggcggacg gcgatgctgg acgaacttga gtcacaccag      2640
     aaaaacggaa cgtggaagct ggttcagcta ccggaaggac ggaaagcgat cgggtcgaag      2700
     tggatctaca aagtgaagcg agacgagaac aaccagatcg tgaagttcaa agccagactt      2760
     gtcgcgcagg gctatgcgaa gcatcacgtg ggcgagccgt cgccaacctt gcgtgacgct      2820
     ttcatcgatg aagagtgagt acgtcgccct ctgcgagtcg tgccaagaag cggtgtggct      2880
     cagacaactt ctccgtgact tcggagagca acaagacaac ccgacggtca tcaacgaaga      2940
     caaccaagac tgcttggcgt ttgtgcgttc cgaacgaacg agccgacgat ccaagcacat      3000
     cgacacgaag cagaagtaca tccacgagtt gtgcctgagg aaggagatca agctggagta      3060
     ttgcccaacc gaccagatga ctgctgacgt gttgacgaga ccgttggggc caacgaagca      3120
     ccgggagttc tgcgaactac tcggactcgg gcagcatcag tgagaaggtt cacactgagg      3180
     gggag                                                                  3185
//
ID   Copia-18_CQ-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   AAWU01015423;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-18_CQ_;
KW   Copia-18_CQ-I; Copia-18_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-250
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 352-352 (2011).
XX
DR   GenBank; AAWU01015423; Positions   65984   65735.
XX
SQ   Sequence 250 BP; 52 A; 69 C; 54 G; 75 T; 0 other;
     tgttgaaagt aaacagtgtt cacctataca cctcctcctt ggcgcgccgt ttctgcacca        60
     accttctgtt gcgttgcctc ggcgagtgca cggcatcatt cccgctcaaa acgttgtcgc       120
     gtgcggttcg atttctcgct aaataaaata aaacgttctt ttgtaaaagt taaacgcgag       180
     tgtgttttcc tttcgccgat tctcgtctcg tcgcggtaat ccgctgtgca ttccggacaa       240
     aagtccgtca                                                              250
//
ID   Copia-18_SI-I repbase;    DNA;    INV; 4166 BP.
XX
AC   AEAQ01022549;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-18_SI_;
KW   Copia-18_SI-LTR; Copia-18_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4166
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022549; Positions    4723     558.
XX
CC   Positions [1566-2075] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           501..2462
FT                 /product="Copia-18_SI-I_2p"
FT                 /translation="MEVRQYGTFVAGLKVIIRRIEALESEDFGRNFNEKLL
FT                 MAKILGCLPKEFDNFVTSWSLLSEDTSLESFLEKLTNAERSITERSDDTSH
FT                 EAFKIRPKSTNSQSKKTMNKRFPGKCHKCGKIGHMKKDCWSKVEKQESSEE
FT                 KKETKSQQNEVGLSASSVFKVNDDNKIIADSGASIHLTRNIEWFSSLRKLD
FT                 TPLILSVANGKTLQATHIGNITIEKSIDGKKWIKRIWENVYYAEDMSSESL
FT                 FSTTFMEMTKGYSFYHGNGLMQLKDGRETILGGKRIGNQYVPYIRVKPPSF
FT                 HAKAAQSIGLWHQRLGHVSDKTIRAMCKNNLTDGLEVIFTKRDDCDSCHFG
FT                 KQTINQHPTKEKRDCLPGERFHSDVCHIGIMSWNKCKYFLTMKDEASGYRR
FT                 VFFLKTKDEVSNILKQFFIDAERETGRKAISLRTDNGTKYVNENVKEVLKL
FT                 RNIIHELSPPNVKQCNGMAERENRTLCDTARSLLFNTDLSRTDRHLLWTEA
FT                 SGTAAYLRNRIPNRGIMNTTPYYEWYGKKPNISHLRIFGAKAFVRVPDTMR
FT                 RKMDPKSRKTVFVGYDRLTDKIYRVFDPTRKVVERVSDVIIQDSSDENNQV
FT                 LFPLSSDKQVEDFEEPAIESSSSGNGEKEEKDDSEETIDNSYKEEVSSSDD
FT                 YEEVR"
FT   CDS           2449..4149
FT                 /product="Copia-18_SI-I_1p"
FT                 /translation="MKKLDDINEDLLKMRKRGRPVGSKNFQKPVPSTDREL
FT                 RSGSNKLACIAAMKVSMDPTSYEDAISREDAHLWKKAMDEEMMSLTKNQVW
FT                 KLEELPKDRPTVSCRWVFKSKLKADGTIERYKARLVARGFNQTKGVDYFET
FT                 FSPVVRYESVRTVMAIAAKYDMEMTQFDIKTAFLNGPLKERIYMQQPEGYD
FT                 DGTHRVCLLQKGIYGLKQASRNWNIFFNDFVMEYGLIQSDADPCIFTKDAN
FT                 TDNWMILCLYVDDGLIVCKSNKLLKDFISSLRRKFEITCHEPSCYVGMDIK
FT                 RDREMKTIYVNQQGYISRTLCRFGMQDCKPVTSPMDSSVKLMEQKNEEDII
FT                 GKRFPYREAVGSLNYIALISRPDISYAVNTLARFSNNPSEVHWRAIKHVMK
FT                 YLKGTIGFSLCYKGKSEDKLVGYCDSDYAGDLVSRRSTSGYVFMLHDAPIS
FT                 WSSNLQRVTALSSTEAEYMSISEALKELLWLRSLLESFGLKQAGKTELRVD
FT                 NQAAIAMSKNLEFHKRTKHIEIRFHRIRQEQEAGNVDVTYVPSNKQVADLL
FT                 SKGLTWAKISEYLEILKMTS"
XX
SQ   Sequence 4166 BP; 1494 A; 647 C; 927 G; 1098 T; 0 other;
     gattatgaga cttagtgcac gtcgagtcga taggtggtta tttcgaggtt aggagagata        60
     acagacagaa agttgtgtat tgctaagaag atatcggttc tctagcgata agaatcacag       120
     aaagaaacga tggctgatga aatttttagt cgagacattc gagtgacaaa actttcgaag       180
     acaacgtaca gccgttggaa gattgagatt cgagatgctc tcgaaagtca tcggatatgg       240
     gaaatcgcca atggtaatgt aaatcaacca caagaagtaa gtgaagcagg cgttgttaaa       300
     aataaaaaag aaatagagga ttggaaagcc aaagacagta aagcgcgttc gattattcgg       360
     tcaacgttag atgatacgac cttcgaccag gtatgtgatt gcgaatcttc agaaaatatt       420
     ttgaagagaa ttaaagccgt ctatgagcca aaaacattaa atgttttgtt agaattgtta       480
     cgtgaattct tcgtctactc atggaagtca gacagtacgg tacattcgta gccgggctta       540
     aagtaatcat tcgtcgaatc gaagcgttag agtcagaaga ctttggtaga aattttaatg       600
     aaaaattgtt aatggcaaaa attcttggat gtctgccaaa agaatttgat aattttgtca       660
     cgagctggtc acttttgtca gaagatacat ctttggaatc ttttctagag aaacttacaa       720
     atgcagagag aagcattact gaacgttcag atgatacgtc acatgaagca ttcaaaatcc       780
     gaccaaaatc aacgaacagt caatcgaaga agacaatgaa caagaggttc ccaggtaaat       840
     gccataaatg tggtaagatc ggtcacatga agaaggactg ctggtcaaaa gtggaaaaac       900
     aggaatcgtc tgaagagaaa aaggagacaa agagtcaaca gaatgaagtt ggtctttcag       960
     cgtcatcagt cttcaaggta aacgatgata ataaaattat tgcagactca ggagcaagta      1020
     tacacttaac aagaaacata gaatggtttt cgtcgctgcg taaattggat acaccattaa      1080
     tattaagtgt cgcaaatggt aaaactctac aagcaactca tataggtaat atcactattg      1140
     aaaagtcgat tgatggtaag aaatggatta aacgaatatg ggaaaacgta tactatgcag      1200
     aagatatgag cagtgaatcg ttattttcga caacatttat ggaaatgaca aaaggatata      1260
     gtttttatca cggaaatggg ctcatgcaat taaaagatgg acgagaaaca attctaggag      1320
     gaaaaaggat tggaaatcaa tacgttccct acattcgagt caaaccacca tcttttcatg      1380
     caaaagcagc acagtcaata ggattatggc atcaacgact aggacacgta agtgataaaa      1440
     cgatacgagc aatgtgcaaa aataatttga cagatggtct tgaggtaatt ttcacaaagc      1500
     gagatgattg cgactcatgt cattttggta agcaaacaat taatcaacat cctactaaag      1560
     aaaaacgaga ttgtttgcct ggtgagcgtt ttcattcgga tgtctgccat atagggataa      1620
     tgtcgtggaa taaatgcaaa tactttctaa caatgaagga tgaagcatct ggctatcgga      1680
     gagttttctt tttgaaaacg aaagatgaag tatcaaacat actgaagcag tttttcattg      1740
     atgcagaaag agaaacagga agaaaagcaa tttctttaag aacagacaat ggaacgaaat      1800
     atgtaaatga aaatgtaaaa gaagttctaa agttaagaaa cattattcac gaattatcac      1860
     cacctaatgt taaacaatgt aatggaatgg cagaacgaga aaataggacc ttgtgtgata      1920
     ctgctcgatc tttgctgttt aatacggatt tgtcaagaac ggatcgtcac ctcctttgga      1980
     cggaagctag tggtacggca gcttatctta gaaatcgaat tccaaatcga ggaatcatga      2040
     atacaacacc atattatgaa tggtatggta agaaaccaaa catctctcat cttcgaattt      2100
     ttggtgcaaa agcttttgta cgtgttcctg acacaatgag acgaaaaatg gatccaaagt      2160
     caagaaaaac tgtgtttgtt ggatatgatc gattaactga taaaatctat cgagtttttg      2220
     atccaacaag gaaagttgtg gaaagagttt ctgatgttat aattcaagat tcatcagatg      2280
     aaaataatca agtattattt cccttatcgt ccgacaagca agtagaagac tttgaagaac      2340
     cggctattga atcctcaagt tcaggaaatg gcgaaaaaga agagaaggat gattctgaag      2400
     aaacgataga taattcatat aaggaggaag taagttcaag tgacgattat gaagaagtta      2460
     gatgacataa atgaagattt gctgaaaatg agaaaaagag gacggccagt tggctcaaag      2520
     aattttcaga agccagttcc ctcaaccgat agagaactaa gaagcggatc aaataaatta      2580
     gcatgcatag ctgcaatgaa agtgtcgatg gatccaacat catatgaaga tgcaatttct      2640
     agagaagatg cacacctttg gaagaaagca atggatgaag aaatgatgtc attaaccaaa      2700
     aatcaagtgt ggaagctaga agaattgcca aaggatcgac ctacagtctc gtgcagatgg      2760
     gtttttaaat ccaagttaaa agcagatgga acaattgaac gatataaagc gagacttgtg      2820
     gctcgaggtt tcaatcaaac taaaggagta gactattttg aaacattctc acctgtagtt      2880
     agatatgaat cagtgagaac tgttatggca atagctgcta aatacgatat ggaaatgacg      2940
     cagtttgata taaagacggc ttttcttaat ggtccactta aagaaaggat atatatgcaa      3000
     caaccagaag ggtacgatga tggaactcat cgtgtttgtc tcctgcagaa gggtatctac      3060
     ggactcaaac aagcatctag gaattggaat atctttttca acgattttgt aatggaatat      3120
     ggcctgatac agtccgatgc ggatccatgt attttcacta aggacgctaa tacagataac      3180
     tggatgattt tatgtttata cgttgatgat ggactcatag tttgcaaaag caataaattg      3240
     ctgaaggatt ttatttcgtc gcttagaaga aaatttgaaa ttacttgtca cgagccatca      3300
     tgctatgttg gtatggatat caaacgtgat cgagaaatga agactattta tgtcaatcag      3360
     caaggataca tatctcgaac tttatgtcgg tttgggatgc aagattgtaa accagtaacg      3420
     tcaccgatgg atagttctgt caaattaatg gaacagaaga atgaagagga tatcattgga      3480
     aagagattcc cttatcgaga agcagtgggc agcctaaact atattgcgtt gatatcgaga      3540
     ccagacatat cttacgctgt gaataccctt gcaagattct cgaataatcc gtcggaagta      3600
     cactggagag caattaaaca tgtgatgaaa tatctcaagg gaacaattgg tttttctttg      3660
     tgctacaaag gaaagtcaga agataaatta gttggatact gtgattccga ctatgcagga      3720
     gatctagtgt caagaaggtc aacatctgga tatgtgttta tgctacacga cgcaccaata      3780
     tcctggtcat caaatctcca acgagttaca gcactttcgt caacagaggc ggagtacatg      3840
     tccatttcgg aagctctaaa ggaactccta tggttacggt cactgttgga atcttttggt      3900
     ctgaagcaag caggaaagac tgaattgagg gtagataatc aagcggcaat agctatgtcg      3960
     aagaaccttg aattccataa aaggactaaa catattgaaa tacgttttca tcggattaga      4020
     caagagcagg aagcagggaa cgtggatgtt acctacgtac catcaaataa gcaggtagca      4080
     gacttgttat cgaagggctt aacatgggcg aagatttcag agtatctgga aattttgaag      4140
     atgacgtcat gaacaggggg gtgtgt                                           4166
//
ID   Copia-18_SI-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   AEAQ01022549;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-18_SI_;
KW   Copia-18_SI-I; Copia-18_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-270
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022549; Positions     557     288.
XX
SQ   Sequence 270 BP; 68 A; 59 C; 52 G; 91 T; 0 other;
     tggaactata cgtgttcaag acgttgaatg tgtgtagttg gcaacgcgga gaggttgcaa        60
     gtacaagact ttctgaacgc ttgacttttt cgtgcctcga ttgcgcgcca aaactccctc       120
     acgcgatccg ctcttactct ctgtacgcct ctatagtaaa gcgtcgtgtt gtctctgtga       180
     taatctttta tgtctgtcta tgtaacttgt actaactata taaaagcctt tttcgactgt       240
     attttcaata aacaaataga cttttcaaca                                        270
//
ID   Copia-190_AA-I repbase;    DNA;    INV; 3953 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-190_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3953
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3953
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1460-1460 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 3953 BP; 1099 A; 775 C; 1130 G; 946 T; 3 other;
     ggttatggcc ccagacatgg aagaaaaggc gaaaatcaca ccgtttgatg gttccggatt        60
     ccataattgg cgcttccgga tggaaacggt tcttgatacc ttcgatttgt tggattgcct       120
     cgaacgcgag gtggaagaaa ttgaagagtt gcaagaggag gatgatgatg cggcacaagt       180
     gaaggcagag aagaagaaga aagtgttgga gagaaaatcg caggagaaaa agtgcaaatc       240
     actcatcgtg caggcggtgg cagacagcca attggaattg attaaagatt gtaaaacgcc       300
     gaaagtgatt tggaacacac tgaggaacat cttcgaaaag cgtggtgttg caggtcagct       360
     gtacatccga aaacagttgc ttacgctcaa gtacaccgaa ggaaccggtt cgacgatgtc       420
     ggaacatttg atgcgctttg atcgactgat tcgggagctc aaagggagcg gtgccaacgt       480
     ggatgactcg gacgcaatct gtcacttatt gctgacgttg ccgtcgtctt tcgattccgt       540
     cgttacggca attgaaacac tcccgggggg cgttgaaatg gatttcgtca aaaagcgcct       600
     aatggatgtg gacatgaagc gtcgaaattt cgactcagct gctcaagagg gcggcagtga       660
     tggtgtggcg atggcgagca agcataagat gaagatgaag tgttatcggt gtggaaaagt       720
     gggccacaaa aaggccgaat gccgcgtgcc ggtgaaagaa aaagtgaatg agaagaaacc       780
     gaaaaacgat gcgggcagta cgcagaaagc aaacattggt gtgcgagaag aaaaaccaga       840
     agtggctttc gtggcaaccg atatggaaga ttttgtgaag attggttggt atctcgactc       900
     gggcgcgaca gaccatatgg tcaatgactc tcggttcttc gtgtccatgc gtcgtttagt       960
     gaatccgatc gagattttgg tggcaaatgg acagaaactt gtagtcgaat acagtggcca      1020
     tgttatgatt tacgtgcgtg tcaacgggaa aaccacgaag tgtgaagcca aagacgtgtt      1080
     atatttgcct ggcttaagct gcaacctgtt ttccgttaaa cgaatcacac gactgggatt      1140
     caaagtgagt tttgataagg aaaaagcaga agtgtcgaag gatggtgtaa cttgggcagt      1200
     aggttggctc aaggacaaac tatacgagct ggatgtgtac tgcaaagaaa gtgaaatggg      1260
     atgtgcctta gtttccggga aagtgtcgcg gaatgcgttg cagtggcatc agcgttttgg      1320
     acatgttggt aacgatggtc tcaagcagct cgtccggcat aaaatggtgg aaggcttcaa      1380
     tcttacggag ttcgacgatg ataccgtcgt gtgtgagccg tgcttatcag gtaagattgt      1440
     tagattacca tttgaaccca ccgaagagag gcgatcgacg cgaaccttgg agcttgttca      1500
     tagcgacgtc tgtggcccaa tgaccccgca cacatgggat gggaaaaggt tttacgtctc      1560
     tttcattgat gactattccc acttcacgat aatctatctc atggcgtcca aggacgaagt      1620
     agttcattgt tttcgcgaat atgaagctct tgtaaccgct cgcttcggat cgagaatctc      1680
     ccggcttcgg accgacaatg gaggagagta cgtcggtggt gaaatgcgtc gtttttgtcg      1740
     gagcaaagga atagcgttgg aaactaccat cccttacacg ccacaacaga atggcgtgtc      1800
     tgagaggatg aacagaacac tgatggaacg tgccagagcc attctagcgg acagcggttt      1860
     cggtaaggaa atgtggggcg aagccgtgta cacggccaca tacgttacga atcgatgtcc      1920
     gactgcagct gttgatgtca acaaaacacc atacgagctg tgggtggggc gaaagccgga      1980
     tgtcagcaaa ctgcgtactt tcggttgcgc cgcgtacacc cacattccaa aggagttgag      2040
     aaccaaactt gatcccaaag gaaggaagct gtacatggtg ggatatacag ttaacggcta      2100
     tcgtttgtgg gatgcggaga aaggtaaggt tgtcgtggca agagatatcg tgttcgatga      2160
     gagttcgttg ttcggttcaa agctgacggt tcccgaagta tcaacgaagc agattgagtt      2220
     gtcctgtgag aagcaagttg ccgaagtaca agaagaggag gctccggaag atgctccagg      2280
     tgctccagaa aacgaagtgg aagaagcagt ggttcggaga agtggacgat ctaggaaaga      2340
     accagtgtgg tttgagaatt atgagatgtc atgtggcttg gcgatgagcg cagagaactt      2400
     cgttgaggat ttgccaaaca ccgtggcgga actcaagaag cgaagtgact ggcaatgctg      2460
     gaagcaggcg atagcggaag agatcgattc attggaaaag aacaagacct gggtacttac      2520
     wtcgttgccg actgggcgga ccgtgatcga cagcaaatgg gtttttaaaa tcaagcgcaa      2580
     cgaagttggt gccatcgacc gctacaaagc acggctcgta gccagaggat ttactcagcg      2640
     gagaggcttc gactacgagg acacgtactc tccggtagca aagctaacta ccctgcgtgc      2700
     cgtattagct gttgcgaact tcgagggcat gcacctgcac caactcgacg tcaaaaccgc      2760
     ttttctaaat ggaacgttga aacaggatat ctacatgcga cttccaagtg agtttggcgc      2820
     aggagatttg gtggctaaac tgcagaaatc gctatatggc ctcaaacaag cctcacgtga      2880
     atggaacagg cgattccatg atttcatagt gaacctcggg tttgggcaaa gtgaagcgga      2940
     tagctgcctc tacatcgcat gtgatgatgg agaagcggtg tttctgatta tttatgtcga      3000
     cgacatcata atagccagcc gttckctaac cgttattacc gctttgaaga agaagttgag      3060
     cttagagttt gaaatgaccg acttgtgcga agtgaaaatg tttcttggtt tggcaatcga      3120
     gcgtgataga gagaagggtg ttctacagat ccaccagaaa cagtatttgc tgagcctatt      3180
     gaatcgtttt ggtatgggag aatgcaaagc ggctcatact ccaatggaag ctggactaaa      3240
     actggacacg tcttctgatc cgtcggagta cactactcat ccgtatcgag aactcgtcgg      3300
     ctgccttatg tatgtcactg tgacatcgcg tcctgacata agcgctgccg tgaattattt      3360
     cagcggttat cagagctgcg ccacagattt acattggagt catcttaagc gtgtcttgcg      3420
     ttacatacgg ggcacgttgg atmtgaagct agtgtttcgt cggcaaaagg aggatgatgt      3480
     tatgaacgga tatgttgact cagattgggc aggaaacata acggatagga aatcagtctc      3540
     cggtttcgtt ttcacggtct attcgtcgac agtatcctgg accacgcgga aacagccatc      3600
     ggtagcgctc tcttcagctg aagctgagta tatggcgctc agtgttgcag ttacagaagc      3660
     tatttggcta cgtcgtctat taatggattt gagtgttaag atcgatgaac ctaccgtaat      3720
     atatgaagac aatcaagctt gtattcgagt ggctgaagat gacaagatga tgaagagact      3780
     gaaacatgta gatgtgagat accattttgt aagggacgaa atccaaaagg gagtgtttcg      3840
     tttagtgtac gtgccaacgg gcaatcaaat tgctgatatg atgactaagg gactgggcag      3900
     acttcagttt gttaagctac gtgaattgct cgggctatca gcttgacggg ggg             3953
//
ID   Copia-190_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-190_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-220
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1506-1506 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 220 BP; 60 A; 53 C; 40 G; 67 T; 0 other;
     tgttagagtg caatcgtata ccccttgatc aacactacac acaacagaga taaaccatga        60
     actgtatccg caaagaggcg gccctgcatt aaaacgtcaa aaggttgctt tcaataaatt       120
     cattctaaag tgcgtttcct acaaacaaca agtgtttcat ttttctctct ctgagtcctt       180
     cggtcgtcga gtctttagtc ggtctgcgcg ttcgctttta                             220
//
ID   Copia-191_AA-I repbase;    DNA;    INV; 4075 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-191_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4075
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4075
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1461-1461 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4075 BP; 1118 A; 851 C; 1184 G; 922 T; 0 other;
     ggtcatgggc ccagtggatg atcggaaaac gcagaagtga ttcggttttc gcaggtagtg        60
     attttttttt tttcggccgg tgcggttttt tgcggcacgc gtgtgtgaac tgatcgacgg       120
     aagaagtaaa gtgcaagtgg atacaaaatg gcagacgttt cgaaactttc tttcgtacgg       180
     ctgaataaca gtaactggca gtcgtggagt ttccggatgc aaatgctcct cattcgggag       240
     gaactttggc atgttattaa cgctgaaaag ccagaggagc cggacgacga ctgggcgcgc       300
     gatgaccagc gtgctttggc aacaatcggc ttgtgtctgg aggaatctca gtacagtctg       360
     gtgaagaaga aagaaagtgc aaaggaagcg tggaaatcac taaaagcgta ccatgaaaag       420
     ccaaatatgt cgtcgcgagt gtcactttta aaaagattgt gctccattaa cctttccgaa       480
     ggcggtgata tggagggaca tctcgtcgcg ttggatgatt tatttgagcg gcttgaaaat       540
     gttgggcaga aactggatga ctcgttaaaa gtggcaatga ttttgcgtag tttgcctagt       600
     tcgttcgaca gtttagtgat ggctttagaa agccgaccgg acgcggacat tacactcgat       660
     ctcgtaaaat caaaactgtt ggatgcgcac caacggcatg cggatcgggt ggacgataaa       720
     tcggtcagtg aaaaggcaat gaaatcgaac acaaatcgcg acaacgagaa agtgtgtttc       780
     ttctgtaaaa agccagggca tttcaagaag aattgccgaa agtttttggc acttcagaag       840
     agcggaggta gtgattcgaa gcaggacggt aaaccggcgc ctccgaaggc caagcaagtt       900
     cagaaaacga gtgagccgtt gtgttttatt gcgggacata ctgtgaaaaa tgcgtggatc       960
     atggacagtg gggcgtcttg tcacatgact agtgacagaa gcttctttac gtcattgacg      1020
     gagcgtgccg gagcagatgt tgttctcgcc gacgggaacg taaccaaaac ggtcggttcg      1080
     ggtgaaggtg taattcgcgg tatcggtggt gacggaaaac cggttgacat tcgtattacc      1140
     gacgtgttgt ttgtgccggg attagacggt agtctgttgt cgatcggtaa gatggcaagc      1200
     aaaggacttg aagtgcgttt cacggacaac ggttgtgata tcgcgaacag ttcgggcaat      1260
     attgttgcgg tcggtgagcg attcggtaat ctgtataaac tgagtgaagt ggaacgagca      1320
     atgcagtccg tcggtgaatg ccacagtgaa atgtgtcgtc atttgtggca ccgacgattt      1380
     ggccaccgtg atatggacgc aatcgttaag gtgaagcggg aaaaactcgg aagtggtgta      1440
     aaaatgacgg aatgtcgaag agaagaaatt tgtgaaactt gcctcgaagg gaagcttact      1500
     cgaaagcctt tccccagtgt tgtggataag aaatcgaaga acaccctgga tcttgtccac      1560
     actgacctgt gcgggccgtt cgacaacgtc acgccgagcg gtaaccggta ttttatgagt      1620
     ctaattgatg accatagccg gttcaccgtt gtatacttgc tgcgcgaaaa gtcggaggcc      1680
     aaggagaagg tgaaggacta cgtgtcgttc tgccagaact acttcgggag gaagccgaag      1740
     atcatccgat cagacggcgg cggtgagtac ataaacaaag atttgaaact tttctatgcg      1800
     aaagagggca ttgtcgccca gtgtactacc gcgtactcgc cgcaatctaa tggagtggcg      1860
     gagcggaaga accgctctct gcaggagatg gcttcatgca tgctcctaga tgccggcatg      1920
     gagaagagat actggggcga agctattcgt acggcagcgt acttgcagaa ccggcttccc      1980
     tccagaacta tcgacggaac accctatgaa agatggtacg gtagcaagcc ggtgttggat      2040
     catttgcgag tgttcgggag cgatgcgtat gtccatgtac ccgacgttaa acggagcaaa      2100
     ttggatcctc ggtcgcggaa gctgacgttc gttgggtatg cggaagatcg gaaaggatac      2160
     cgattcttgg atcgtacgac aggcacaata acgctgagca gagatgctac cttcgtcgaa      2220
     tgggacaacg gctcgtcgca ggtggaactc cagagccgga agaacgccaa tccaaactgg      2280
     cagaagcagc gacaatcggt gtcggtgaaa gattctggag aatccgaaga cgagggctcc      2340
     gacgtgagtg aaaatggaga atttgaaagt ttcgacgaag agcatccgat tcaggaggag      2400
     cggaatactg tagagccgac caagcagttg ccgaccagga agacgcgagg aaaaatgccc      2460
     accaagttaa cggattacgt tgtcggagtt gctatgagtg ccgttgaaga accaacgaca      2520
     tttcgtgaag ccatggagtc gtcggagaag aaattttgga tcgatgccat ggaggatgag      2580
     atgaaatcac atgacaacaa caccacatgg gaacttgtgg agacaccgcc gaaccgtaaa      2640
     gttattggaa gccggtgggt cttcaaagtt aagcgaaatg agaaaggtga catcgtgaaa      2700
     tacaaggcgc gtgttgtggc ccaaggctac gcacaaaagt tcggcgtaga ctacgaccag      2760
     gtctatgctc ctgtggttag tcacacaact ttgcggacgc tgctggctgc ggcgggtaga      2820
     aacaacttcg ttctgaggca cttcgatatt aaaactgcct acctgtacgg gaccttagac      2880
     gaagaagtct acatgagaca gccgccaggt ttcgagatgc cggggaaaca aaaccatgtt      2940
     tgcaggcttc ggcggagtat atacgggtta aagcagtccg ctcgctgctg gagcgagaag      3000
     ctctcgacgg tgcttacgaa gctaggattc cagcggagct caacagatca atgcctcttc      3060
     tttaaagcga tgccagatgg aagtaggatc tacgtgttag tctacgtaga cgacatgttg      3120
     gttgcggcgt cagaaccatc aatgatcgac gatgtctacc gtggattaca acaattcttc      3180
     gagatttctg accttgggaa ggcccactat ttcttgggaa tggagatagt acaggagaac      3240
     ggaatgtatt ccatcagcct gcgcagttac attgcgcaaa cgattcgaaa gttcgggatg      3300
     agtgaagcga agcctagccg tacaccgatg gatataggat atccgcaaga ttcggaaaca      3360
     agtcagtcgc tgcaggatgg gcaacactat cgaagcttgg taggtgccct tctgtacatc      3420
     gctgtaacag ctcgaccaga tatagcaaac accgttggga tccttggcag gaaagtgagt      3480
     agtccctgtg aatccgactg gacagcagct aagagaatcc tcagatactt aaagggaacg      3540
     caggactgga gattggtatt gggacaatcg cgagaagaag gaaatagact ggtagcttac      3600
     tccgacgctg actgggccgg agatgtgtcc agccggaagt caacgaccgg gtgtgttatt      3660
     ttctacaacg gcggtgcgat aagctggatt agcaggaagc aaaattcggt gaccctgtct      3720
     tctatggaag ccgaatactg tgccttgagc gaaacctgcc aagaactgct ctggatacgc      3780
     cgtttgctca aggacttcaa cgaagaacag caacaaccaa ctcttgtttt tgaggataat      3840
     caaagttgct tgagttttgt cagctctgat cggatgagta agcgttcaaa gcacattgaa      3900
     acgcgtcaac atttcgttcg ggatctctgc gatcgccggg agatacgttt ggagtactgc      3960
     cccacagaat gcatggtcgc agacatcttc acaaagcctc ttgccgcaat caaacaccac      4020
     cgtttttcgg agatgctggg actcacggat ggacgagttg aagattgagg aggag           4075
//
ID   Copia-191_AA-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-191_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-282
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-282
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1507-1507 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 282 BP; 74 A; 71 C; 51 G; 86 T; 0 other;
     tgtaggagtg acagcaatct ccatctctta tgaaccaccc tatgtggaga aatcggcgag        60
     cgagcgaaaa cccattcttc atcgggcaat cctttttcgc cccactcgac acaggtctac       120
     cgctacaaaa gtgatcgaga agtttcattc catttttgaa ctgtatccaa gttagaagta       180
     ttttttcatt aaagttgttt ttcctttcgt cgttaattaa aaccgcgttt ttgttagcac       240
     atccgaagga atggtattcc cactgtcctc ccagctccaa ca                          282
//
ID   Copia-192_AA-I repbase;    DNA;    INV; 4222 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-192_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4222
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4222
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1462-1462 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4222 BP; 1087 A; 939 C; 1260 G; 936 T; 0 other;
     ggttatgtgc ccagcggccg aggccacgga agatttgctg tacggaagga ttcggccggg        60
     tagagccgga tagttcattt tgcgttgcgt cgcgggtgcg cagttttttt cgtcgcgaga       120
     gtctggacga tctggacggt tgaaagcgtc ggttgtggaa gaagagtgta atcgcttctc       180
     gaaagagaaa gagcataccg agccaacagt gaataacatt tcgttttccg tagtgttccc       240
     aacacgggaa acaagtgagc tcgaagaaaa ctagcgtaac ttttgtgaag tgcctcattg       300
     cgaaattgag atgggtgatc cgaagttttc catccctctg ctcaacgggc agaactggca       360
     gacttggcgg atccggatcg agatgcttct gtgccgtgaa aatttatggg aggtgataag       420
     caacgggctt ccggtggaag aggagcgtac tactgcttgg ttgaggaacg accggaaggc       480
     aaaggcaacg ttgattttgc tcatcgatga cagccagctc ccgctggtta aggattgtgt       540
     gtacgcccac gacgtctaca gtgccctgaa aaattatcac cagaaaacga cacgatccgt       600
     ccgtgtgtcg ttgttgaagc gtttgtgttc cacgaatcta gcggagaacg gtgacgtcga       660
     gaagcattta gcagtttttg atgatctctt cgatcgtctc gacggagctg ggatgaattt       720
     ggataaagac accaaagtct gtatgttact ccgaagcctt cctccttcat atgatggtct       780
     agtgacagcg ctggacagcc gatcggatga agatatttcc ctcgatgtcg tgaaggcgaa       840
     attggtcgac gagttcaatc gacaccttga acgaaagggt gtagctgtga aggtggagaa       900
     ggcaatgcgt tccgaagcgg gcaagccacg aaacgaaact cgaacctgcc actactgtaa       960
     gaaggctgga cacctaaagc ggaactgccg gaagctcctg gcggaccagc agaggaagga      1020
     ttgcaattcg ccgaaggtgg aaccagatag gaacgtgaag gcaaaagctg cacacaacga      1080
     tgcgagaggt gtggcgttta cggttgctga tgaagctcac ggtagctggg tgatcgacag      1140
     cggggcgagc gcccacatgt gcaacgatga atcgttcttt cgttcgttga agcatttcgc      1200
     tggtggtttt atcacgctgg cggatggcaa gcgcacgcag atacaaggcg aaggatctgg      1260
     cgttgtgtac ggagtcaacg gagaaggcca tgttcagaag atcgacgtca acgaggtgaa      1320
     gtttgttcca gccctttcga cgaatctgat ctcagtgagt aagttgtccc aaaaaggctt      1380
     taaggtgagt ttcgatacgg aagggtgtga tattgtcgat gttggtggta cggttgttgc      1440
     gactggaggt cgccacggcg gtctgtacta cctgcgaatc gcagaaacgt caatggcagc      1500
     aactgaggga catcataaag tgaattgcca gcatcaatgg cacagacggc ttggacaccg      1560
     cgactgggct gccgcggaga gaatcgttaa ggaggatttg gccacaggta tgaaagtgag      1620
     tgattgcggg ttgcgacagg tatgtgagtg ctgtatggaa agcaagtcgg ccaggttacc      1680
     gtttcctccg gtggttaacc ggaaagcgtc gcgtgcactg gacatagtac acactgactt      1740
     atgtgggccg atggagtgca ctacccccag tggcaatcgg tacgcgatga ccatcacgga      1800
     cgattttagt cgcttcaccg taacatacct tcttcgccac aagtcggaag ctgccaacac      1860
     catcaaggaa tatgtcaaat gggtcgaaaa cctgtttgga cgcaaaccgc gcgtagtgcg      1920
     ttcggatgga gggggagagt ttgtgaataa ggaactgcgt gacttctaca aagccgaagg      1980
     aattcaacaa cagttcacta ccccctattc gcctcagcaa aacggggtag ctgagcgcaa      2040
     aaatagatcg cttggagaga tggctacgag tatgctagtt gacgcaggtt tggagaaacg      2100
     tttctggggc gaggctatcc tcacagccac ctacctccag aacaggcttc cctctcgatc      2160
     tgtcccgaga acgccttatg agctctggtg gggcaagaaa ccagatcttg gtcatcttcg      2220
     ggtgtttggc agccaggctt acgtccatgt gccggacacg aagaggaaga agatggacag      2280
     caaggctacc aagcttacct tcatcggcta tgcgatcgag cagaaaggct atcgtttcgt      2340
     ggacttggag tcgaacctga tcaccgttag ccgtgatgct cggttcattg agcttggaaa      2400
     cggttcttcg tcggtggaaa taccagatcc cgcaacgaag aagatttcgg aagaagatgt      2460
     gcaagtgatt ccttccaaag aagaggaagg agaagatcat ggtgaagaag caagtggttt      2520
     ggatgacatt gaactggata gtgaaaatga agatgcccct agttccggaa ttcgtcgctc      2580
     gaagcggacc actcaaggaa cacgaccacg gtacttgcag gaatatgatc tggaattcgc      2640
     tgttggattt gctgcatgcg cagtggaagg accagccgat catcgcgaag caatgcaaga      2700
     tccgatatgg cggaaggcca tggatgaaga gatcgccgct catcaacgga acggcacgtg      2760
     gaaactggtt ccacggccga aggatcagaa ggtaatcgga tcgaagtgga tttataaggt      2820
     aaagcggaac gagaacaacc agatcgtcaa gtgcaaggca agattggttg cccaagggta      2880
     tacccagcga accggagtcg atgtgcacga tgtgtttgct ccagtgacgt gccaggcgac      2940
     attccgggca ttcctcacgg tggcgtccaa taacaacatg tctgttcgcc atttggacat      3000
     taaaacagcg tatctctatg gatatctcga ggaaagcgtc ttcatgcgac aaccgcccgg      3060
     tttcgaggca gcaggtaagg agaacaatgt atgtcagctc cagcgtagca tttacggttt      3120
     acgccagtca gctcggtgct ggaataaacg tttggatgat gttttgttga agaatggatt      3180
     ccgagctgct gcagcggacc cctgcctgta tgtgaagggt gaaggtaaaa ccaaggtgct      3240
     gctgatggtt tatgtagacg accttcttgt cgcatctacg gatgaagaag agctagtgaa      3300
     gatctgtgga cgactgcaag tggatttcga tttgacatgt ctcggggagg tgcgccactt      3360
     cctgggcgta gaagtccaac acgtcggcgg cgtttacaag ctaagtcttc gaaactacat      3420
     cgagaagctg atcagtatgt tcggaatgga ggagtgcaag acagccaagt cgccgatgga      3480
     tgccggctac ctgaaattgg ctgtagccgg agaagcgttc aaggacccaa cgacctatcg      3540
     tagccttgta ggcggactcc tgtatttagc tgttgtggca aggccagaca ttgctgcgac      3600
     cgcagcgatc ctcgggagga agttcagcga cccacgcgag cacgattgga cagcggctaa      3660
     gcgggtgctc cgctatttga aagcgaccaa atctcatcaa ctgcagctag gtggagacaa      3720
     gacgcagagc ctcgtcggtt actctgacgc cgattgggca ggagatgttg gcagcaggcg      3780
     ttcaacaact ggaatagttt tccaattcgg aggcggtaca atagcctggg caagccgccg      3840
     ccaacccagc gtcacgctgt catcgatgga ggcagagtac ctggccctga gcgaggcgtg      3900
     ccaggaagct ctgtggctcc gtcagctgct ccatgctttg ggagaagcac agaatcttcc      3960
     tactctagtg aaggaggaca atcaggggtg cttgtccttt gtgcgatccg agagaaagag      4020
     tcgacgaagc aagcatatcg acacacgtca tcggtttgtg caggaattgt gtgaaaggaa      4080
     ggaagtgcga cttgaatatt gcccaactga tcgtatgctg gcggatatta tgacaaagcc      4140
     gcttggacct cagaaacatc gggagttctc gaagctgctc ggtttgatag agaacaactg      4200
     atgagttatc attgaggggg ag                                               4222
//
ID   Copia-192_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-192_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1508-1508 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 267 BP; 62 A; 67 C; 44 G; 94 T; 0 other;
     tgttgaacgg gacaatgact acctcatcta tcaataacct ttgattccct ctctcaatta        60
     ccctaccttt catgctcaat atactttgat cctttgttga cgtttatcag ttagttacca       120
     aacagtgagc gatacagaac gtttgtactt ttcaataccg gtcaataaaa cgtaaatata       180
     gtttgtatcc gcgtgtttgt tttctccgtc ggtgttccga attcccgttg gccattccgc       240
     tgtatgttca cctcgactct gccgtca                                           267
//
ID   Copia-193_AA-I repbase;    DNA;    INV; 3926 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-193_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3926
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3926
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3926 BP; 1128 A; 860 C; 1081 G; 857 T; 0 other;
     ggttatgggc tccacggcga atactgcaag cggaattccg cagtttaacg gcggaccgga        60
     tttccaacat tggagcttca gagtgaagat gcatttggat tcggtcggcg ttttgaataa       120
     cctgacggag attgcacctc aagcgcctgc ggacaaggtc aagtttgaag aggcggatcg       180
     taaggcaaag gcactcatcg taagtttcct ggccaacgaa tgtttggaag tcatccgtga       240
     gaaatcgacg gccaaagata tgtgggaagc cctagaagca acgttcgcaa ccaagtctat       300
     cggatcgcaa cacctgatca ggaagcagct caaccggttg aagctgaagg aaggtgaacc       360
     gatgagaccg catttgctgg tgttcgacga attcatccgg cagatgaaga cggctggtgc       420
     gaaagtggac gaagctgatc tggtggtact attgtttcaa actttgcccg attcctacga       480
     cccactggta accgctctgg aaaacgttcc ggaaaaggat ctgaagatcg aagtcgtgaa       540
     gcaacgtttg ctggccgaag acatgaagcg tcaagaacga aatgaccaag atggtgaagc       600
     taaaggagcg gctttctccg gtgataaaac caagaaaccc ttcaagtttc agggtaagtg       660
     ccataagtgt ggtaagcgcg gtcatttcaa gaaggactgc cggcagaagc tcgggaccgg       720
     cggtgaagct aacgcagctg aaaataaaag aaaggcggtg agcttcgtgg caaaccgaag       780
     cagtgtgaag cggaagagcg gaaaactagt attcaagcta gattcaggat caagcgatca       840
     cctcgtcaac gacagcagag tattttctgt ggttcagaag ctgaagcagc ctatcgtgat       900
     caacgtggca aaagatggcc agtccctaat cgcgaagact agtggtgaga tccatggcaa       960
     cagcaacaag caatatccgc tgcatatgaa ggacgttttg tatattccgg aactgcgtga      1020
     taatttgatg tccgtgaaga agctcgttat ggccggagtg caggtaaact ttgtcgggaa      1080
     ggtagcatta ttgaagaatg atggagaaac catagcaacc gctcacctca gcggcggact      1140
     gtatgaactg gagatcgacc tggaaggacc aacggcaaac ttgtgtaaac ctatgacgga      1200
     cgaattatgg catcggaggc ttggacattt aagtaagcat ggaatgaagg cgatggcaac      1260
     caacaacatc gtgactggtg ctgacttccg aggagaaaag ttgaatttct gcgatgcctg      1320
     cgtccaaggg aaacaatgtc gggacccctt caacggtact cgtgatcgag caaccaggcc      1380
     attggaaagg attcactcgg acgtgtgcgg tcccatcgac cctccagcat gggatggatc      1440
     aagatacttc gtgagcttta ttgatgacca tacccatttc gcggtgctgt atttgatgcg      1500
     gaggaagtct gaagtcttca gcaaatttca agagtacgag gccatggcaa cggccaagtt      1560
     tggtttaaaa atttcaagat taacagtgga ccaaggacgt gagtatggct tcaacgcgca      1620
     aaaagatttc tattgcagga agggcattca aattgaacca acggtggctt atacgccaca      1680
     acaaaatggc gtttcggaac ggttcaaccg aactgtaatt gaaaaggtcc gtaccatgtt      1740
     gatcgatgca agcgttccca aggagatgtg gcccgaggct gtcctaaccg ctgtctatct      1800
     catcaaccga agtccgacga cagccctctc caagacggtt actcctgctg agttgtggta      1860
     tggaagcaaa ccgtgtctgg cgaaactgcg tgtgtttgga tgcaaagcat acgcttggat      1920
     tcctagtcag cagcgtaaga agctagatgc aaggagccgg gaaacggtaa tggttggtta      1980
     cgctccaaat ggtttccggc tgtgggaccg taaggctagg aagatagtca ttgctcgaga      2040
     cgtaaaatgt gacgaagcct gttttccgta taagaagtgt cccgaggaca agaaggattc      2100
     tccattggtg gtgtattttc cgcccgagca agagggggaa gaagcccatg gtatcgagga      2160
     tgatagaccc aaccatcttg tggatgttga agcaaatggc aatcaagata ccgacgatga      2220
     atttgtagat accgtaaata ctggggcgct cccttcgcaa ccagaacagc acgactccga      2280
     ggatgagggt caaccgttgc tgaggcgcag cgaacgggag cgcaagctcc ccggtaagtt      2340
     cctaaatttc ttcactgggt atagagctac ttctgccggt ccgtgcatta cagatgtccc      2400
     agactgcttt aacgaaatcg aaggccgaga tgatcgtgac aactggttga aggctgttca      2460
     agaagaattg gaatccttga aggccaatcg cgtttggaaa ctgcagagct gtcctcaagg      2520
     ggtcaaaccg cttcagtcca aatgggtgtt ccgtgtgaag gagaacgaaa atggcgagaa      2580
     ggtccgatac aaggcccggc tggtggtgaa agggtaccaa cagcgcgcgg gcatcgatta      2640
     tgaagagacc tacgctcccg ttgcgaaact taccacaatc cgaacagttc tggccgtagg      2700
     agtgcaccat cgattcctgt ttcaccagat ggacgtcaag accgcgttcc ttcatggtga      2760
     cctgaaggag aatatttaca tggttgtacc ggatggcgta gaagctggtc aaaacagtgt      2820
     atgcaagcta gagaagtctt tgtacgggtt gaagcagtct ccacgctgct ggaacgaaag      2880
     actgaatggc caattgctga gaatgggatt caccaggtca tgccacgatt actgccttta      2940
     cacgagatgc acgaaaggag acgaaatgta tatcatcatt tacgtagacg acctgctaat      3000
     cgctggaaga aagctgagtt caatcgtacg actcaagaag gaactatccg ccgtattcaa      3060
     aatgaccgac tgtggcgagg ttcatcactt cttaggaatg aaggtcgaat acaatcgcaa      3120
     tgaaggaaga ctacggctat cacaagaagc tcaagtagta aaaattctac aacgattcgg      3180
     gatgatcaac tgcaattcgt gcaaaactcc gatggaaaaa ggactccaat taaagcgtga      3240
     cggaccatca acgaacgagc catatagaga gctgttgggt agcataatgt acaccatgct      3300
     atgtgttcgt ccggacatct gctatccggt gagctacatg ggacggttcc agcagaatcc      3360
     aactgatcaa cactggcaat cattgaagcg gatcgtacgt tacctgcaag gaacaatggg      3420
     gctttgtctg gaattcaagc gtgacgaaaa tgcagcacca ctggttggat ttgcggactc      3480
     agattgggcg gcggataacg aggaccgaaa gtcggtgagt ggcttcatat tcaaggtctt      3540
     caatgctacc gtatcttggt ctagcaaaaa gcaaacgacg gtagcgacat cttcaagcga      3600
     agcagagtac gtcgctctga gtgctgcagc atcagaagcc atctggttga cggggatcct      3660
     agaagatttg aacatcaccg tgaaacccgt tgtcattcac gaagataacc ggggctgcat      3720
     tggtatggcg aagaatcgcg agacgaaacg cagcaagcat attgatgtga aacatcattt      3780
     tattcgtgac cacgtagaag aaggacgatt actgatcgag ccggtgagca cccaggatca      3840
     acttgcggat gtattcacca aggctctaga tacttcccgt ttccaggaac tgcgacgtaa      3900
     cctcggacta aacgattgag aggggg                                           3926
//
ID   Copia-193_AA-LTR repbase;    DNA;    INV; 145 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.08, Created)
DT   18-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-193_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-145
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-145
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1509-1509 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 145 BP; 52 A; 33 C; 18 G; 42 T; 0 other;
     tgaagacgaa gcaacccgat gcaaccgtta ttcaagtcgc agtagcctac actttttcaa        60
     ttacattttt cattgtgtca ttccaaactc aaacctcaaa gaataaagac gtgtttttcc       120
     aaaacttgaa cctaaactta taaaa                                             145
//
ID   Copia-194_AA-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-194_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-279
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-279
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1510-1510 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 279 BP; 60 A; 79 C; 54 G; 81 T; 5 other;
     tgtggaaatg tacatcgtct accactacac acatcccatt caacagtgcg caccttcgtg        60
     tgcaccccta ccttgcgccg actgcaagac gagagaggag aaagacaata acgtgtttca       120
     ttccwaaagt agcgcttccc gcaatcagtt gtgttttttc attatcgcwt attaaacgww       180
     tcgtaamcgt agtttctcgc gtgtgcttta ttgctgctgc tgtccactcc gaatcccatt       240
     acgctgtctt ccactgctgt gtccctgact ttgccgtca                              279
//
ID   Copia-195_AA-I repbase;    DNA;    INV; 4459 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-195_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4459
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4459
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1463-1463 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4459 BP; 1155 A; 1004 C; 1320 G; 973 T; 7 other;
     gttwtgkgcc caggtgctgt ggcgaaaaga tcggttcgcg agtgtwgttc ttccgktcgg        60
     aaagttccgt tggcgttccg ccccgtgtga gggcgacgga aaggaaggcg aaatagaaga       120
     gaacagtgcg agtgattgct cctccaggag gaggaaagaa magaagaaga agagccgctc       180
     gaagagggaa aactgtgttc catttttttc gttgttccct agtgacgagc cgagcacgcg       240
     gtgctcgatg acaagtgaga aagtgtttgc ccgagcaaac taacctcaaa aagtttgttg       300
     tttttttttt cgttcacgtt ctcactcatc ggaaaagtga ttcgcgtgtg ttgtcgaaat       360
     gtctgacgcg agatttgtcg ttccgaagct ttccggaaca aattggcaaa catggaaaat       420
     tcgcctcgaa atgttgttgt gccgcgagaa tttgtggagt gtcgtktcgg atgatttgcc       480
     ggacgaagat gatcgcgatg aagactggga gaacgacgac cgaaaggcga aggcgacgat       540
     tgtgctcctg ctagaggaca gccagttgcc tctggtaaag aagwgtttac acgcgcgcga       600
     tgtgtttcta gcccttcgca gctaccacga gaaaacgtcg cgatcggtac gagtgtcact       660
     cctcaagaaa ttgtgcgcga ttaatttgcc tgagggcgga aatcttgacc agcatttgct       720
     ggaagtggat gatttgttcg accggttgga ggccgcggga atgacgctcg ataaagacac       780
     gaaagtgtgt atgctcctgc ggagcctccc gcgatcgttt gacagtttgg tgtcggccct       840
     cgacagtcgg ccggacgatg aaatcaactt ggaagtggtg aaagcaaagc tggctgatga       900
     gtacggtcgc cgttgtgaac gtgatgcggg cgcgagtggt gcgaaacatg aaaaagcgat       960
     gcgctcagat gtgaagaaag aaacgcgcaa gtgtcacttc tgcaagatgc cggggcacct      1020
     ccggcgaaac tgcaggaagt acaaggagtc cttgaagaac agtgacagta gtgaatcgaa      1080
     aggtagaaag gaagaagccg gtaaggccaa aacggctaac agtgaagtga agcacgtcgc      1140
     gtttacgatt ggcggtgatg cccgtgcgtg gctcatcgat agtggggcaa gtgcccatat      1200
     gacgagtgac agagcgtttt tctcggaact gaacgagttc gcgggcggct ggattacgat      1260
     ggccgacgga cagaagacgc aaatactcgg tgaaggccgc ggagtgcttt acgggtacga      1320
     tgagtgcgag aatatcgttc ggatcgatat gtgcgacgtg aaattcgtac cgggtcttgc      1380
     gactagcctc gtttcggtta gcaagctagc gcaaaagaac atgagtgtgt gtttcggaaa      1440
     agaagattgc aagatcgtcg acacgaacgg cgatactgtc gtgactggat cccgcagcgg      1500
     aggattgtac cacctacgca tagctggtgc agcaatgaag gcaaccgaaa gtcagcatcg      1560
     agagaactgc cagcatcagt ggcatcgccg gttgggccac cgcgattggg ccgccaccga      1620
     gcgtatgctg aaggaaagta tggtcgacgg aataaaggta agcgactgtg gattgaaaat      1680
     tatttgcgaa acttgtttag aggggaagtc ggcaagagcg ccgttcccgg aggtcgtcga      1740
     gcggaaatcg aaacgtgttc tggacatcgt gcatacggat ctctgcggtc ccatgaagaa      1800
     tgagacaccg agcggcaacc gctacgttat gcacgtaatc gacgactaca gtcgcttcac      1860
     cgtgacgtac ctgcttaagc acaaatctga ggctgcagac aacttgaagg actacgtccg      1920
     ttgggcagag aatatcttcg gccgcaagcc cgccgtagtg cgctcggatg gaggaggaga      1980
     attcgataac aaggagctgc ggaagtttta ccgcgaagag ggaataaaac cgcagttcac      2040
     cactccctat tctcctcagc aaaacggcgt ggctgagcgg aagaatagaa cgatcaccga      2100
     gatggccacc tgtatgctga tcgacgccgg attagagaag cgctactggg gagaagcagt      2160
     gttgacagcc acctatctcc agaatcggct gctgtccaga tcgattggaa agacgcctta      2220
     cgaattgtgg tggggacgga agccggatct gtcacacctg cgagtttttg gcagtgaggc      2280
     gtatgtgcac gttccggcgg tgaaacgtgt gaagatggac agtaaagcac ggaagctggt      2340
     gttcgtcggg tactccatgg agcacaaggg gtaccggttc ctggaccgtg acacggacac      2400
     agtaatcgtc agcagagatg cgcgcttcat ggagttgggc aacggatcgt cgtccgttga      2460
     gatcccgctg aacgcacacc cgaactccga atctcgtcga aaggatccag tacaggatga      2520
     gcgagaatcc gttccgcagg gcgaatctac gaaagaccgt gatccgctga aagatgattc      2580
     tctctacgaa gatgctgaat ctgtagatgg tgatcaggaa gtcgttcggc gttcaagtcg      2640
     ttcaacccgt ggtgtacaac cgcagcgttt tgaagactac gtgttgggaa gtgtgattga      2700
     acaggcgtcc tgtgcattcg aggaacctag caactacgga gaagccatga aggatccaca      2760
     atggcgcagc gccatggagg aggagctgaa tgcccacaag cgtaatggga cttgggagct      2820
     tgtcaccatg ccagcaggaa agaagattgt gggatccaag tgggtcttca aattgaagtg      2880
     caatgagaga ggagaaccgg tgaaacataa ggccagagta gtagcccagg gctataccca      2940
     gcgtgaagga gttgacttca gtgacgtgta cgcgccagtg tcaagccatg tatcactgcg      3000
     tgcgttcctc gctgtggctg ctaacaggag tttccatgtc caccatttcg atgttaaagc      3060
     cgcctatctg cacggttcac tcgacgagga aatctttatg agacaacctc caggattcgc      3120
     gaagaaaggt caagagctgt tagtctgcaa gttgagaaga agcatctatg gcctccggca      3180
     atcagcgagg tgctggaacc ggcggctaaa cgaggtccta tcgaagcttg ggtttaaggc      3240
     gtctatggct gatccctgtc tttatgtccg tggaggcgac tgcgaggcgt acctattggt      3300
     ttacgtcgat gacttactgc tagcgtcagc gtcggagaag gaaatctcaa agatattcga      3360
     cagcttgaaa gcggagtttg agttaacgtc gctgggaccc gtgtgccact tcctaggatt      3420
     ggaggtaaaa cggaagcaag gagtattcaa gattcgtttg caacagtaca ttgaaaagct      3480
     aatcgacagt cacggaatga aggatgctaa aggtgcgaga tccccgatgg acttaggcta      3540
     cctgaaatcc gtggaaacca gtgaagcttt ggaagacgca acccagtatc ggagtctagt      3600
     aggaggcatg ttgtacctag ctgttgtagc tcgtccagac atcgctaacg ccgctgccat      3660
     tcttggcagg cagttttgca atccaactca gcgcgactgg accgccgcaa aacgtacgct      3720
     ccgttatctt aagcagacca gcggttatta tctagtgatt ggtggtgatc cagatcagca      3780
     actgaacggg tactccgacg cagattgggc cggtgaccca aaagaccggc aatcgacttc      3840
     tggaatggtg tttttcttcg gtggttcggc aatttcgtgg gcaagccgca aacaaggaag      3900
     tgtcactctc tcgtccatgg aggccgagta cgtggccttg agcgaggcct gtcaagaggc      3960
     cgtctggttg aggaaattgc tcagcgatct tggccaacct caaacgcagc cgacggtgat      4020
     tcaagaggac aatcagggct gcttgtcctt cgtcaagtgt gaaagggcga gccgtaaatc      4080
     gaaacacatc gatactaggc agaagtttgt tcagcaactg tgtactgaga agatcgtcaa      4140
     actcgtgtat tgtccgactg aaactatgac agcagacgtg atgaccaaac cgttaggtcc      4200
     gaccaagcac atgcagttct gtgaagcact tggcctacag cagtgaatcc gaagctactg      4260
     tgccttgagg aggagtgtgg agaggcaatg cacctagctt cgcatcgggt aacccctcgt      4320
     taactctcca ctgctgccaa cctacccatc cggtagatgt gtagaataga aaaccattct      4380
     gaactgaaag ttaccgcgtg aagacgtgtt cactactttg taaaccgaaa tcgtattaat      4440
     aaagtttctt ttgtacttc                                                   4459
//
ID   Copia-195_AA-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-195_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-280
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-280
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1511-1511 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 280 BP; 69 A; 76 C; 54 G; 81 T; 0 other;
     tgtggagagg caatgcacct agcttcgcat cgggtaaccc ctcgttaact ctccactgct        60
     gccaacctac ccatccggta gatgtgtaga atagaaaacc attctgaact gaaagttacc       120
     gcgtgaagac gtgttcgcta ctttgtaaac cgaaatcgta ttaataaagt tccttttgta       180
     tttccgcatt taactcttgt ttcgcgtgtg atttccgcgt taccgaatat ttcccacgaa       240
     cgcatattcc actgctccac ggaacctgct cagtccgtca                             280
//
ID   Copia-196_AA-I repbase;    DNA;    INV; 4060 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-196_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4060
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4060
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1464-1464 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4060 BP; 1094 A; 787 C; 1192 G; 970 T; 17 other;
     ggttattggc ccagcagtcg cggaaagtat cgagttttgc ggttcgcggt acggaaaagt        60
     gaattttgcg aaatttgcgt atcggtagtg aacgtgatcg tgcttgttga aaacaagatg       120
     gcggaatcac acgtctcgat cgaaaagttg aatgatcaga acttcacaat atggaagttc       180
     aaaatgcaac ttctgttatc acgtgaaaag gtgctgaaag ttgtgatgga accggcgccg       240
     acggcccctg atgcttcatg gtccgccaac gacgagaagg cgagggcatt gatcgggctg       300
     gcattggacg acagccagct tattcacgtg atgcagacca acacttcgaa ggagatgtgg       360
     gacgctctga aaggatacca cgagcgatca tccctttcga gtaaaatcca tgtcatgcgc       420
     cagatgtttg ccaccaagat gccggagggt ggaaacatgg gagagcacct caaacagctg       480
     acgtcattga ggctccggtt aattgctctt ggagaagaag tgaaggatcc gtcgtttgtt       540
     gccttgatgc tgtcgagtct accaaaatcg tatgacggtc tgatcgtggc attagagagc       600
     cgaccggatg cggatctcac ggtagacttc gtcaagggta agttgctgga cgaaggccga       660
     cgtcgtgtgc aggaaggcgt ggaagatgag aaggcattgg tgtctagtgg attcagtgag       720
     aaaagtcgaa acaggagtga gaagaaaast gacaagaaga aggaaaaact gtgtcactat       780
     tgcaaaaagg aaggacattt ccgaagagac tgccggaagt gggccgcgga caagaaagac       840
     aaagagaata gtgaaaaagc aaacattgcc gcggaagttg aggatagtgt ggatctgtgt       900
     ttgttcatcg ggaaggcgga tgacgckggg ctgtggtatt tcgattctgg ggccacttcc       960
     catatgacaa ackatgcgtc tgtcctgagg caactggata aatcgaaaca gtcgaaaatt      1020
     tcgttggctg acggtcaatg cgttcaatcg gctggtgtgg gaagcagcaa acttgttacc      1080
     gtgaatggga aagkaggccg catgaatgtt tcgmtggaca gtgtgtatca tgtaccatcg      1140
     cttacaacaa atctgctatc ggtgagcaag attaccgatt tgggttttga agttgtgttc      1200
     gataagaatg gatgccgtgt cctgaaaggt gaaaaagtgc tattagtggg ggaacgcaaa      1260
     ggtggccttt atcacctgaa gcgatttcca gagcaagcca tgttagcgga ctcgaatcac      1320
     ggagtttctt gcctacatct gtggcatcgt cgttttggtc accgtgacac ggaagcggta      1380
     ctgaagatca tgcgaaacga tttkgggagc ggcttgaaag tgaatcagtg taacgtgagg      1440
     tccgtttgtg gttcatgctg csaagggaaa ttgagccgtg aatcattccc aaaagtgtca      1500
     tcttcgwsak catcggctgt tggtgacttg gtgcatacgg acttggctgg tcccatggag      1560
     gagccaacag cgcgcggcag tcgatttttc atgacagtgg tggatgacta cagccgttat      1620
     acagtaatct tcctgttgcg taacaagtct gaagccgagg atcggattcg ggagtactgc      1680
     gctttggtca ggaatcagtt cggccactac ccgaaggtca ttcgatccga tggcggcgga      1740
     gaatatgcgg gtaagtcgtt gcagaaatat ttttcagatc acggaatagt ccatcagtgt      1800
     acggccccgt actccccgca acagaatggg gttgccgaac gtaaaaatcg gtacctcgtt      1860
     gaaatgatgc ggtgcatgtt ggcggattcg aaaatggaga aggtgttctg gggcgaggcg      1920
     gtttcgactg caaattatct gcagaatcgc ttgccatcgt catcgataaa gtgcacgcct      1980
     catgagttgt ggtaccggaa gaagccggcg ttcgcacatc ttcgcgtttt cggatcggaa      2040
     gcttacgtcc acatccctag ggaaaagcgw cgaaaacttg ataagaaggc tgagaagttg      2100
     gtgttcgtcg gttatgcgga wgggcagaag gcttatcggt ttgtggacct ggaaacgaaa      2160
     agaatcgtga ttagccgtga tgcaaaattt gatgaaaaca gcgacgttgg agaagcgaag      2220
     aaacaggagc catccaagtc aggaggagta gtgatagtgt cacttggacc aactcccccg      2280
     ctcgaggaag tgaatgtcga tcttgatgcc gatgctggtt gtgaggagct tgatgcaaca      2340
     caatacgaca gtgctacgga tgatgatcta gcggatgaac catcgttcca tggttttcct      2400
     ctggatgagg tggcacgaag gtccaaacgt gtgaacaagg gtatccctcc ggttcggttg      2460
     attgaagaag cttattcagt gggaactatg ccggaagcag ttgaacccag gaacttgaag      2520
     gaagccttat cctgtgaaga acgcgctgag tggagagcag caatggtgag tgaattgaaa      2580
     tcgcacgccg aaaatggaac ttgggagctt gtcgatttgc ctgcaggacg gaaggtggtt      2640
     ggttgccgct gggttttcaa gttgaagcgg aacgcagctg gtaaggtgat caaacacaaa      2700
     gctcgtctgg tggctcaggg ctattcgcag cggttcggcg aggattatga tgaggtcttc      2760
     gctccagtaa cgagtcacac aactcttcgt atgttgcttg ctcttgcttc gaagaagaaa      2820
     atgacactta agcatttcga cgtawagacg gcctacttat acggcgagct cgaccaggac      2880
     ttgtttatgc ggcaaccacc tggatacgag gaaaaaggca aggagcactt ggtttgtcgt      2940
     cttaaaagga gcatatacgg actcaaacag tccgcacgtt gctggaacca aaagctgcat      3000
     ggtgttcttt tgaagatggg tttcaagcaa agtaatgctg atcagtgctt gtataccaaa      3060
     gtcgaaaatg ggaagaaagt gtatttgtta gtgwatgtgg acgatataat ggttggatgc      3120
     gaaaakgaac agtatattga ctgtgtgtac caatcgttga aaaagtgttt tgagattacc      3180
     gatctcggag acttgagcta ttttctggga ctggagataa agcgasagag cggtgattac      3240
     agtgtgagcc ttgaaggcta tattgataaa ctaatagaca aatttggttt gagtgamgca      3300
     aaagttgcta aaacgccaat ggacgaaggt tttttgaaag tggacgatac aagcgcagct      3360
     ttggctgacg aaacaaaata cagaagtctt gttggcggtc ttctgtatat ttcagtgtgt      3420
     gcacgaccag atatttcggt tagtacggct atacttggtc gcaaagtgag cgctcctact      3480
     gaggcatgct gggtggcagc aaagcgagtc gttcgctatt tgaaggcgac caaacattgg      3540
     cggctgttgt acaacggatc tggaggcggt ttgatcggat atgcggacgc tgattgggcc      3600
     ggtgatgcaa gttcgaggaa gtcaacaact gggtatgtat tttgctacgc aaacggagct      3660
     gtttcatggg ccagtcgtaa acaggcttgt gtaaccctat cctctatgga gtcagagtac      3720
     gtcgcactga gcgaggctac ccaggaatta gtctggcttc gtaggttgat gcaagatatg      3780
     ggcgagcgtg aagaaggacc tacaaaggtg atggaagaca accaaagctg cattagtttt      3840
     gtgaactccg aaaggatcaa ccgtcgatcc aaacatatcg agacaaagga gtgtttcgtc      3900
     aagcagcaat gtgagcaagg acttctgaag cttgaatact gtccgacgga acacatggtg      3960
     gcagacgttc tcaccaagcc cctggggact acgaagcaac gaaagttttc tggaatgctt      4020
     ggattgtcgg ccaatcgtgg caccattcgt tgaggaggag                            4060
//
ID   Copia-196_AA-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-196_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-234
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-234
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1512-1512 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 234 BP; 55 A; 44 C; 47 G; 88 T; 0 other;
     tgttgtgagt gcaactactg tgcgccactc tatgatgttt atgttctctt tattattctg        60
     ttctttaata ttggcaacag tgcgctgagc ggaagcattt cgcgccttcg gtgcacgttt       120
     ttttcataag ttgttgagac gttgaagtga atacatcgat tcgtgaataa ataatctttt       180
     ctcgttaatg aactaaactt ggcctttcaa ttctgctgaa tactctgtcc aaga             234
//
ID   Copia-197_AA-I repbase;    DNA;    INV; 4043 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-197_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4043
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4043
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1465-1465 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4043 BP; 1109 A; 849 C; 1167 G; 918 T; 0 other;
     ggttatggcc ccagtcggta tcgttacgga tcagttccgg gaagtgttcg gaatcggtta        60
     cggtctttta gttcgagtcg caagttattt tccgcgaaag tcgcgagtga aaatccggcg       120
     gttgtttttt cgcaaaatga gtgggcgaga gttatcaagt tgaataactc aaattacccg       180
     gcgtggtctt tttccgtcac agctttgctc cggcggagca gttgtggaag tacgtcgatc       240
     cagggacagc accaaccccg gtaacggatg catggaaaga tggcgatgaa aagacgctcg       300
     ccaccgttca gctgctggtg gacgagagtc agtacagcct attcgcgaca aaacgacggc       360
     aaaagagacg tgggaagccc tcaagcagca ccacaacaaa acgtctctgg ggcagaaagt       420
     gacactgctt aagcaaatca ccaaccaaaa ctacaaggta ggtgataata tggaaagtta       480
     cctcgccgga atcgagaagc agtcgctcgt ctcgagaatt caggattcga aatgaccgaa       540
     tgcctgaagg ttgcgttaat ccttcgtggc ctcccggatg cgttcaaccc cttgacgacg       600
     gcgttagagg cacgggatga aaacgagtca cacttgagat ggtcaaagtg aagctcatcg       660
     acgaagcgga taagcagaag agcgaaacgg gagacacggc tctgagagtt ggatctagcc       720
     atcagcagca aaaatcagtg gatgtttcgt gctacttctg cggaaagttg gggcaccgca       780
     aacggaactg taaagcgttc ttggcggcga agaatagtga cgataaaaat atgaagaaga       840
     agtcaaaaga aaaggcgaaa acagtgcgcg aagacgacca agagtcgttt acgtttatgg       900
     tgcggtcgtg tgattttgga gctggtgcgt ggttaattga ctctggtgcg acgtcgcacg       960
     tagctaacga caaaaatttg ttcgttcggt tggataaaag tgcgcgtccg agtatttcgg      1020
     cggcggatgg caaaatgctc cgcacggaag gcatcggaga ttgtaccata cagtgcatga      1080
     acgatcgcgg tgaaaacgtt tcggtaacgt tgacggaagt gatttttgct ccggagctcg      1140
     aaagtaatct cgtgtcggta gcaaaacttt cgaacaaggg tgtgcgcact gaattcgacg      1200
     gtgaaaagtg caaactgttg cacggacaga aagtcgtcgc ggttgctgac aaaatcagtg      1260
     gactttatcg tttgaatttg gccggtgagc ggtctttgct agtgagtgat aaacggcata      1320
     gtgaagaatg cctgcatatg tggcatcgtc ggctaggcca cagaagtccg gaagcactca      1380
     aggaagcggt gcataaaggc ttggtgtctg gaatgtgtgt tagtgagtgc ggaatcaggg      1440
     taacatgcga atgctgtatc aaggcgaagc tggctagacc gtcgtttccg caagtagctg      1500
     agaaaacgtc gaaggaggta ctcgacatag tacacagcga tgtctgcggt cgatgacgga      1560
     gaccccgggc ggctgtaagt actatatgac catgatcgac gaccatagca ggtacactat      1620
     ggtgtacttt ctcaaagaaa aatcggaggt cgaagacagg atccgcgatt acgtccgatt      1680
     cacacagaac cagctaggaa agaagccgaa ggtcattcgc tcagatagag gaggtgagta      1740
     caccagcaaa cgacttcgta aattttatgc tgaggagggt attaagcctg aatacaccgc      1800
     cgggtatgct ccccaacaga atggggtggc ggagcgaaaa aacaggacgc tcaatgaaat      1860
     gttgtgtatg ttactggatg caggactgcc aaaacgtttt tgggcagagg cggtcaacac      1920
     ggccgcgcac atccagaaca ggttgccgtc aacagccgtt gacaaaactc ctttcgagca      1980
     ttggtttggc aggaagccgg acctgaaggg catgaagatt ttcgggtgtg ctgcatatgc      2040
     gtggattcct cctcaaaagc gtaaaaagtt cgatgtcaaa gccgagaaac ttacctttgt      2100
     cggctactct tccgagaaca aagcttacag gctactggat gcacacactg gcaggattgt      2160
     tgggagccga gatgtaagat tcgtggaatt tgacgaggca aagccgggaa tcatcggaaa      2220
     agaggcagag gaaatcgaac gtgacacgga tgaagaaatg ttcgtacgac ttggaaatcc      2280
     gtcggagaag gtggttcctc ctgctccgtt ggaagatggc gttgttaacc gtagtctcga      2340
     cacagaggaa gaatttttcg gttgtgaaag tagctcggat gagggcgagg accgtcttct      2400
     aggtttggag aatgaaccga ttcacgagga atattggtct accgccggag agatttcgag      2460
     aaaccattgg ccttgccgta gcgatggtat gtgagccgaa aagttatgca gaggtgttgg      2520
     ctagtcccga gagcgtcaag tggaaagcgg ctatggcaga agaaatggct tcgttgcaag      2580
     agaatgatac ctgggacgtc gtcaagctac caacgggacg taaagctatt ggatcacgat      2640
     gggtgtatca gcgcaaggag agtgccaacg gggacgtcgt tcgtttcaaa gctaggctcg      2700
     ttgcccaagg ctttcgacaa aagtttgggt gggactacga ccaagttttt gcgccggttg      2760
     ttaggcaaac cacctttcgc accattctaa ccgttgttag cagcaggaaa atgttgacaa      2820
     ggcacgttga cataaaaacg gcgttcctgt atggtgagtt gcaggaggag atttttctca      2880
     agcagcctcc tgggttcgaa agcaaggatt catctgcagt gtgtcgactc aaacgaagct      2940
     tgtatgggtt aaaacaggct gctcgtgtgt ggaaccgtaa aatagatgct gttttgaaag      3000
     gagtcggatt tcaacaggcg aaggcggatc catgcctcta cacgaagcag tctggtggtc      3060
     actacgtata tgtgttgctt tacgtagatg atatgatcat cgcctgcagc actaatcagg      3120
     aatatcaagc gctggtgaag gtgttgcaac agaacttcaa gatcaccgaa ttaggggatc      3180
     tctcgtgttt cttggggatt caagtccgta agcaagctgg tatgtaccgc atcaaccaaa      3240
     aaccgtacat ctcaaaaatc ctcgcacgat ttggaatgga aaaggccaac acttcacgag      3300
     taccaatggg aattggctat ctacaacaac accaggagga gagtgatgag cttaccgaaa      3360
     aggaacaata ccaaagcctt atcggggcgt tgttgtatat tgccataaac agtcgtccgg      3420
     atatttcgat cgctacttct gttctcggac gacgcgtatc caaaccaacg aaggccgatt      3480
     ggattgaggc taagaaggtt cttcgttatt taaaaggcac catcgaccat gagctgcacc      3540
     taggagctgg cggagagttg aagcttgaat gtttcgttga tgctgattgg gcgggtgaag      3600
     taccagaccg taagtccaac actggcttct tgttcaagtt cggcggtggg ctcatcgagt      3660
     ggtgttgccg aaagcagact agcgtagcat tatccagcac cgaggccgaa tatattgctt      3720
     tggccgattg tctacaagag cttcagtggt tgcgcaagtt aatgctcgat ctgggcgtgt      3780
     ccttggcgta cccggtagca gttcatgagg acaaccagag ctgcattgct ctaactgcca      3840
     cggaccgaac atcgcggaag tcaaagcata ttgacacgaa atattgcttt gtaaaagatc      3900
     tcgtggtaaa cggcgttgtg tccatcaagt actgcccgac agaacgtatg gaagcggaca      3960
     tcttgaccaa gccgctagca gcggtgaagc ttggagtact tcgggcggct attggagtaa      4020
     agtcggctga agttgaggag gag                                              4043
//
ID   Copia-197_AA-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-197_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-189
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-189
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1513-1513 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 189 BP; 42 A; 45 C; 35 G; 67 T; 0 other;
     tgttgagccc cctgagtggc gacaacttca ttgacagaga gatactatga cacattgact        60
     ctgtaatgcg tttgtttact tccgcttaat aaaactagat tcattctttt gttagttcac       120
     gttcagtaca cacgtgtttg ttattgcttc cctgatccga gttctttttc cattgcggcc       180
     actccgaca                                                               189
//
ID   Copia-198_AA-I repbase;    DNA;    INV; 4286 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-198_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4286
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4286
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1466-1466 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4286 BP; 1142 A; 898 C; 1334 G; 912 T; 0 other;
     ggttatgagc ccaggagagg ccgaagaaaa gtgccagtga gattttccca cggaaaattg        60
     gaaaatagtg cgatttgtgc gaggaaacaa tttggcttgc tttcggcgtg gggaagcgga       120
     gcgctagttg agtcggtgac gttggcgtcg gtagcgtcgg cggcggtacg aacagttgcc       180
     tgtgtgtgtg ttgctcgatc ggttgggagt cgaaccgacg caacacgaga agaaaattcg       240
     agaacgttag ttgaggttag agacgaacgt gttcggacgt gtcgcgcgtg tgtgaagaaa       300
     taactttctg cagtggattc gatttgaatc gaaaatggct gagaaacaag tgctatttcc       360
     acgcctcaac aaccagaatt attgtacgtg gcagctgcgg atggagatgc tgttaaagcg       420
     ggacgagttg tggttcgcgg tgaacgacgc gaagccggaa ccggtcaccc ccgcttgggt       480
     gacagcggat caaaaggcgt tggcgtcaat tgtgttgctg tgtgaggata atcagctcaa       540
     tttgattaaa aacgctgaat cggccaggga tgcgtgggcc gaactaaaaa agttccacag       600
     caaagcgaca atgacatccc gtgtgtcgct gcttcggagg atctgcagcc tgaatatgcc       660
     ggaaggtgga aatgtggagc gacacctctt cgatttggag gagctgtttg atcggctcga       720
     atgcgctggt cagaagctgg agactccgct aaaggtggcg atgatttatc gcagccttcc       780
     ggaatcatat ggcggattgg tgacggcgat ggaaagccgt ccggacgcgg atcagaccat       840
     cgaattcgtc aagcaaaagc ttgttgacga atatttgcgc cgagtggaac gctctggcgg       900
     ggaatcaggt gagaaagtga tgaagctgca gaataaaggg cagaagaaaa aagtgtgcta       960
     tggttgtggc aagcctggcc attttcgtcg tgactgccag tcgcagcaag agaagaaaga      1020
     agaaggttct cgaagtgata aaaagaaaag tgcgcgtaaa gccaagcagg ctgtcgaaac      1080
     ggaaatcccg atttgtttca cgatcggaag caatcggagc agtggttcgt ggtacgtcga      1140
     tagtggctgc tcgagccaca tgacgaacga gcgagcattt ttccgcgaac tgaacgaaaa      1200
     agtgaagatt gacgttgtgt tggctgatgg atcggtgact agatcggccg gtatcggaaa      1260
     aggaattgtg aagtgcgttg acagtgacgg ccgcgcgaga gacattacct tcacggaggt      1320
     tttgtacctt ccgaagctag acagtagctt gttgtcagtg cgaaaattaa cgcaaaaagg      1380
     actgaaggtg gaattcggcg ggtcaaagtg cacgatagtg aatacggatg ggaaagaagt      1440
     ggcagcggca gtgcttagtg gaaacctgta cgagctgagt gtggcgcacg atgccaagct      1500
     gagcaaggag gctcggcatt cggatagctg ccagcacaca tggcaccggc ggtttggaca      1560
     ccgcgacccg gcggtgctgc agcgcatcga agcagaggat ctcagcgatg gcttccaggt      1620
     gacagattgt ggaattaggc aagtctgcga acactgcctg caaggtaaac tttctcgtac      1680
     tccttttcct aaaatgtcaa ataacagagc aggtcgtatt ctggacctgg tgcacacaga      1740
     cgtgtgcggc cccatgaagt gtgtcacgcc cggaggttgt cgttatttga tgacccttat      1800
     agatgactac agccgctata ctgtggtctg tcttttgaga caaaagtctg aggcggccgg      1860
     gtgcatcaaa aggtttgtgg catacgtaaa aacgcatttt ggaagagcac cttgcgtcat      1920
     tagatccgac ggcggaggcg aatacgtgaa tgaagagctc aaggatttct atgcctcgga      1980
     gggaatccaa gctcagtaca cggctgccta ctccccacaa cagaacgggg ttgcagagcg      2040
     gaagaaccgc agcctccagg aaatggcaac ctgcatgttg ctggatgcag gcctcgataa      2100
     gcagtattgg ggagaggcag tcatgacggc aggctacatc cagaaccgga tgccgtcgcg      2160
     atcagtggac aagacgccgt tcgagagatg gtttggaagg aagccatcgc tgaagcattt      2220
     tcgggtgttc gggagtgcag catacgtgca tatcccggat gtcaaacgtg gcaagttgga      2280
     cgcgaaggct cagaagttgt tgtttgtggg ctactgcgaa gaccgcaagg cttacagatt      2340
     cctcgacccg gagaccaaca ggattaccat tagccgagac gctcgattcg tggagctgca      2400
     gaatggttcc tcgacagtgg atcgtcggaa cgcccaggat ggtgaagagt gtgtggtact      2460
     cgactgggga atgaccgaag ctaaggttca ggaggagcag gccgcacaac agcaggttca      2520
     ggaggagcat caagagtcgg acgaggaata tcacgatttg gagagcgagg atgaagttcc      2580
     tgttggccga gccgtgcaag accgaagtca gagacctgtt cggagcacaa gaggtgtgcg      2640
     tccggagcat cttcgagatt atgtggtgga cgttgcaatg gctgtcgagc aggaacctac      2700
     tagctacgtg gaagcgatta agagttccga ccatgcgttg tggaaggtcg caatggaaga      2760
     agagtacgac tcgctcatac agaacgggac ctggaaactt gtggaattgc ctaccggaag      2820
     agagcccatt ggatgcaaat gggtgtacaa acggaaagag gacagcgtcg gtaacgtgac      2880
     ccgttttaaa gctcgtcttg ttgcgcaggg gttctcacaa cgccctggtg tagacttcga      2940
     cacggttttc gctccggtgg caacccagaa cactctacgg gttctgctta ccgtggcggg      3000
     gcacaaacgg atgagcgtac accatatcga cgtgaagtcg gcgtatctca acgggcggtt      3060
     gcaggaagac ctgtatatgg agcaaccgaa aggattcgta cagccaggca aggagaagct      3120
     agtctgcaag cttgaaaaga gcctatacgg tttaaagcag gcggctaaag tgtggaacga      3180
     aaccatcaac gggatactga aggagttggg gttcaagcag tcacatactg acccgtgctt      3240
     gtatgttaag gtattgcgaa atggcgagcg aatctatttg ttgatatatg tggatgatat      3300
     gttgcttgcg agtaccgatg ctgaggagat acagcgaacc caaagggaac tggcgaagcg      3360
     gatgaaactt tcgtcacttg gagagatatc gttcttcttg gggatacgcg ttaccaagga      3420
     cgcagatggg ttctacaacc tggatcaaga agtctacgtg aagaagattg cgagccgata      3480
     cggattaagc gaagccaagg gatcgaagct gcctctagat gttggttact accaaagccg      3540
     gaaagacagc aagagtttgc gggataacaa gcgataccac agcctagttg gagcgctgct      3600
     ctacgtttcg attaatactc ggccggacat cgcagcgagc gttgcgattt tgggaaggtg      3660
     tgtgagcaat cctctggaag ctgactggaa cgagcttaag cgcgtggtaa ggtatctgtt      3720
     gagtacaagc cactacaagc tgaagttgtc tacgaacaga tctgagccaa tcaagctaat      3780
     cggatattgc gatgcggact gggctagtga tagttcagat aggaaatcga atacaggata      3840
     cgtgtatcag gtcggacaag ctacagtgtg ctgggccagc aggaagcagg cgaacgtttc      3900
     cctatccagc atggaagctg aatacatcgc gttgtccgaa gcttgcaagg aggtggtatg      3960
     gcttcggaga ctactggccg aattcgatgc ggaacaacgt gagccgactg tcgtctacga      4020
     ggacaatacc agttgtatta gtttcgtgga ggtcgagcgc caatcaagac tatccaagca      4080
     catagatacg agaatgcact ataccaagga catagtacag aacggagtgg ttaccctgaa      4140
     gtactgcccc acggagacga tgattgccga tgttctgacc aagccggtcg gaggcgtgaa      4200
     gcagagaaag tttgcgactg ctttaggttt gactgacgag gatggtcgag ccgaaggtgg      4260
     tgcgtaacat caatatcgag gaggag                                           4286
//
ID   Copia-198_AA-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-198_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-238
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-238
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1514-1514 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 238 BP; 54 A; 52 C; 59 G; 73 T; 0 other;
     tgttggtggg ggcgatattt attaacgcca ccactgcgat atccgatgat gagtcgacag        60
     agtcgacgaa caagagagaa acagttacga atgtaccgcg atcgaataaa gttgtattta       120
     gaccgagctc cgtgtgttaa gttttttctt ttcttccctc gttacgtgtc tcccgtagag       180
     aagacttttg tcgggtattt tccgctacgt taacctgctg gtcgtcggtt tgcccaca         238
//
ID   Copia-199_AA-I repbase;    DNA;    INV; 4059 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-199_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4059
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4059
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1467-1467 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4059 BP; 1035 A; 788 C; 1277 G; 957 T; 2 other;
     ggttattggc ccagttagcg ttggaagtgc ttgagttttg aggacatttg tagcgtggta        60
     gtggattttc ggatcgttct tttcggatcg gaagtgtcgt cggtgtgctt gtgaaaaaca       120
     agatggcgga cacaaaagcg acggtcgaaa ggttgaacga cggaaattac gcggtgtgga       180
     agttcaaaat gcgtttgctt ctgacaaagg agaagctgct gagagtggtc atcgatccga       240
     aaccggaagc tgctgatgcg acctggacct cggaagacga gaaggcgcaa gcactgatcg       300
     gtctggcttt ggaggacact cagctaatcc acgtgatgac gaagcaaacg gcaaaggaga       360
     tgtgggatgc gctgaaggat taccacgagc gctcatctct gtccagcata atccacgtag       420
     tgcgacagtt gattaccatc cggatggcag aagatggtaa catggcggaa catctcaagc       480
     agatgacggc gttacggctc cgcttgtctg ctctgggtga ggaagtgaag gacaactggt       540
     tcgtcgcgtt gatgctgtcc agtcttccgc gatcgtacga cggtttgatt gtggcacttg       600
     agagtcgacc ggatgcagat cttacagtgg actttgtgaa gggtaagctg cttgacgaag       660
     gtcgacgtcg tgtcgaaagt gactcaagtg ttgataataa ggctctggtg ataagttcgg       720
     ctaaaacgaa aagtatgagt aagccgaaag tgaataggga gttgtgccat tattgcaaga       780
     agtcgggcca tttccggcgt gattgccaga agctggcaca ggacaagcgt gggaaggaga       840
     agtccgatgg cccgaaggca aacgtcgcaa tcaattcwga ttccagtttc gaggtgtgtt       900
     tagcagcggg tagagtcggc ggatccggtt tctggtacct ggattctggt gcaacgtctc       960
     acatgaccag tgatgcatcg ttgttggtgg atgtggatga gtccaaggca acggcggttt      1020
     gcctggcgga cggaaaatcc attgaatcat cgggaagcgg tacaggtaag ctcgtctctt      1080
     acaacggaga tggtgcaaaa atgaatgtgc ggctcgacaa cgttttgcac gtcccgtctc      1140
     ttgctggtaa cctgctgtcg gtgagtagaa tcacagattt ggggtttcgg gttctgttcg      1200
     agcagaagga gtgccgtatc ctgaaaggag aaaaatcagt gctagttgga caacgtaaag      1260
     gagggttgta ccacttgaag caagctccgg agaaggcgtt tctagcgaat ccgaagcatt      1320
     ccgattcgtg taagcatctg tggcaccggc gtctcgggca tcgcgatatg caagctgtgg      1380
     acaagatagt gcggaacaat ctgggttacg ggttgaagct tgatccatgc gaagtgcggt      1440
     cggtttgtgg tccgtgttgt gaggggaaaa tggttcgtga atcgttccca aaagtatcgg      1500
     acagtaaatc ttgcgcggtg ggagatcttg tgcacaccga cttgggtggt ccgatggaag      1560
     aggaaacgcc cagtggaaat cggttttata tcgtgttggt agacgattac tcgcgttaca      1620
     gtgcagtgta cctgttgcgg cgtaaatcgg acgctgatga acgcattcgg gaattttgca      1680
     atctggtgaa gaatcagttt gggcattttc ctaagaagat tcgatccgac ggtggtggcg      1740
     aatatatgaa cgattcgttg cggaagtatt tcgcgggttg tggtattgtg cacgaagtga      1800
     cggcgccgta ttctccacag cagaacggtg tcgcggaacg gaagaatcgt tatcttgtcg      1860
     agatgcttcg gtgtatgctt gcggagtcga agttgcctaa amggttttgg ggcgaggcga      1920
     tttgcactgc aaactatttg cagaatcgtc tgccgtcgtc tgtcgtgacc aagacaccgt      1980
     acgagctctg gcatgggaag aagccctcgt atggacatct gcggatcttc ggttcggaag      2040
     cgtatgtgca tattcccaag gaaaagcgac gcaagttgga ccacaaggca gaaaagatgg      2100
     tgttcgtggg ctacgctgaa ggtcggaaag cgtatcgttt cttgaaccct gaaacggata      2160
     tgattaagat tagtagggat gccaaatttc tggaattgtg tgacacagaa gaaactgttc      2220
     ggtgccggaa tcaggaaaca ggaggagtac tggaagtacc gctgacgtgg ccatctgagg      2280
     atgagcggcg gtgtgagccg gaaccggctg aagtagagca atttgaagat gctcaggaac      2340
     tcaacgagac gttcaacgaa agtgtttcgg aaggcgatgg atcattccat ggattctctt      2400
     cggacgaaat agcacggcgt tcgaatcgag ctacgaaagg ggttgcgccg cgtcgcttga      2460
     tcgaggagat tttcgctgcg gaatcgctgg atccggacga ggttgaaccg aagaccttga      2520
     aggaagcggt gacctgtgaa aaacaggaat tgtggaaagc ggcgatggtt gatgagctga      2580
     aatcccacca gcaaaacgga acgtgggagc tcgttgactt acctgtcgga cggaaaacag      2640
     ttggttgccg ctgggtgtac aagctgaaga ggaatgcatc cggcgagatt accaaataca      2700
     aggcacgtct ggtggctcag ggatactccc agaaatacgg tgtcgattac gacgaagttt      2760
     tcgcaccggt aaccagccac actactctgc gggtgctgtt agccgtggca agcaagagga      2820
     aaatgacgtt gaaacatttt gatgtgaaaa cggcctactt gtacggtgat ttgaacgagg      2880
     aaatcttcat gaggcagcct cctggatacg cagtgaaggg gcgggaaaat atggtgtgtc      2940
     gcttgaaaaa gagcatctat ggactcaaac agtcagcgcg gtgctggaat cagcgactcc      3000
     atagtgttct cgtggaaatg ggtttcgaac aaagtgcgac cgatccgtgt ctctatacga      3060
     aagtagtaga cgggaagcgt gtttacctac tggtatatgt ggacgatatt atgattggct      3120
     gtgaagatgg ggctcgaatt gactcggtgt acaaagtgtt aaagcggtat ttcgaagtga      3180
     cgaatctcgg agaaccgagt gactttcttg gactgaagat tgagagaatc gacgggaaat      3240
     acagtgtttc ggtggaaggt tacatcgatc gtgttgcgga tagattcggt ctccgtgatg      3300
     cgaagcgggc taaaacgcca atggacgaag gtttcactag ttctgaggac aaaagtgcaa      3360
     aactgccgga tgagaacgaa tatcgtagtc tcgtcggcgc gctgctctac atttctgtct      3420
     gtactaggcc agatgtagca gctagcgtag cgatattggg ccggaaagtg tgttcgccga      3480
     ctgaagcgga ttgggtggcg gcaaaacgtg ttgtccgtta cctgaaggca acgaaaaagt      3540
     ggaaactggt gtacggtgac gaaggtggaa aactgatcgg ctattcggat gctgattggg      3600
     ccggcgacgc aggtacaaga aagtccacaa caggttttgt cttccactat gccggtggag      3660
     ctgtatcgtg ggttagtcgg aggcaaagtt gcgtcactct gtcttcgatg gagtccgaat      3720
     atgtggcgct gagtgaagct agtcaggagt tgatctggct gcggaagctg ttggcagata      3780
     tgggcgagaa gcttgaaggt cctgtcacgg taatggagga caatcaaagc tgcatccaat      3840
     tcgtaagctc ggatcgcaga agtcgtcggt caaagcacat tgaagtgaag cagcattttg      3900
     tgagacaact gtgtgaggaa ggaaccatga agctgcagta ctgtccaacg gaggatatgg      3960
     tggctgatgt actcactaaa ccggtgggtg cagtaaagat gcagaagttt gcaagcatga      4020
     tgggtttgtc ataggctggc aatgctcgtt gaggaggag                             4059
//
ID   Copia-199_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-199_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1515-1515 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 232 BP; 66 A; 52 C; 42 G; 72 T; 0 other;
     tgttgatata gacaacgagc atgccactct gcacctcttt aaggtgacat ctttatgttg        60
     cgcctctctc tgttgtaggt ctttagcaac agcagcatca ttgcgcatca cgcgccaaaa       120
     gcaaaagtga aagtgaattc gtagagttaa catcgttgtt gaataaagtt ccgtttattt       180
     cgtaaattaa ttaaactcgg catttcattc cgctgtaacc tcaactccaa ta               232
//
ID   Copia-19_AA-I repbase;    DNA;    INV; 2676 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_AA_;
KW   Copia-19_AA-LTR; Copia-19_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2676
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 947-947 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1494-2021] - Integrase core
CC   'ACCAC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..2630
FT                 /product="Copia-19_AA-I_1p"
FT                 /translation="MADLSKLSFVRLNNENWQSWSFRMRMLLIREGLWRVV
FT                 SAEQPEDVDDDDWQRDDERAVATIGLCLEDSQFSIIKKKKSAKDVWESLKT
FT                 YHEKPNMTSRVSLLKRLCSINLAEGGDMEKHLVVLDELFERLDNVGQQLDD
FT                 TLKVAMILRSLPDSFDNLVMALESRADADITLDFVKSKLSDAYQRRVDRSV
FT                 DGMVQEKAMKMHTKRDKDRVCFFCKKPGHVKKFCRKFLATQQSDSDSDSNS
FT                 KQPLQKAKQAQKSSEPLCFVAGQAVKNAWILDSGASCHMTSDKSFFTSLVE
FT                 RAGADVVLANGKKTKTAGSGEGLIQGVDSDGKPVKIRLLEVLFFPGLDGNL
FT                 LSVGKMASKGFVVHFTDVGCDIVNSSGCVVVVGDRFGALYKLKSVEQAMQS
FT                 VGNCHTKMCHDLWHRRFGHRDANAVNKVIKEKLGSGMIVTECRRDEVCDTC
FT                 LEGKLARKPFPSVVERKAKQILDLVHTDLCGPFNTATPSGNRYFLSLIDDY
FT                 SRFTVIYLLKEKSEAKEKVKEFVHFCKNYFGRKPKVIRADGGGEYVNKDLC
FT                 NFYAKEGIVAQFTTAYSPQSNGVAERKNRSLQEMASCMLIDAGMEKKYWGE
FT                 AIRTAAFLQNRLPSRVIEGTPYEKFYGSKPKLDRLRVFGCDAYVHIPDVKR
FT                 RKLDPRSRKLTFVGYAEDRKGYRFLDRATDTITVSRDATFIEWKNGSTQIE
FT                 IIHTRNDSKREPQRKHGLPEAEVSSDDEYSDANVDGDFQGLDDAAVQEEQV
FT                 NGNSKKQLPYRKTRNMMPTKLKDYVVGIAMCAAKESTDNREVKKQVNDGVT
FT                 VTKPGISKTVLDAVMENHEGTGRFKKKW"
XX
SQ   Sequence 2676 BP; 752 A; 484 C; 788 G; 651 T; 1 other;
     ggttatggtg cccagtggat gtttggaaaa gcgatcgttc gttttccaaa gtggtagagt        60
     tttsgtcgga agatttttcg gtgtggttga gcgttccggg tagtgctttg tgacatcggt       120
     gcaggaggag aagcaacaaa atggcggatc tctcgaagct ctcgtttgtg cggctgaata       180
     atgaaaattg gcagtcgtgg agttttcgaa tgcgtatgtt gctaattcgc gaaggactgt       240
     ggcgtgtggt cagtgcagag cagccggaag atgtggatga tgatgactgg cagcgagatg       300
     atgagcgagc cgttgcaacg atcggattat gcttggaaga ctcgcagttc agtatcatca       360
     agaagaagaa aagtgcgaaa gatgtgtggg agtcattgaa gacataccac gaaaaaccga       420
     atatgacgtc gcgagtgtcc cttttgaaaa ggttgtgttc gataaatcta gccgaggggg       480
     gtgatatgga aaaacatctt gttgtgctag atgagctgtt tgagcgcctc gataatgtag       540
     gccagcagct cgatgatacg ctcaaagtgg caatgatttt gagaagtttg ccggacagtt       600
     tcgataatct cgtgatggct ttagaaagcc gggccgacgc ggatattacg cttgattttg       660
     tgaagtcgaa gttgtcggat gcgtaccagc gtcgcgtcga tcgctcggtt gatggaatgg       720
     tgcaagaaaa agcgatgaaa atgcacacaa agcgtgacaa ggacagagtg tgtttctttt       780
     gtaagaaacc gggacacgtg aagaaatttt gtcgcaagtt tttggcaaca cagcagagtg       840
     atagtgattc ggattcgaac agtaaacagc cactgcagaa agcaaagcaa gcgcaaaagt       900
     cgagtgaacc gttatgtttt gtcgcggggc aagctgtgaa aaatgcctgg attctggaca       960
     gtggtgcgtc atgtcatatg accagtgata aaagtttttt cacctcgctg gtggaacgtg      1020
     ccggagcgga tgtagtgcta gctaacggga agaaaacaaa aaccgctggc agtggagaag      1080
     gattaattca aggtgtcgac agtgatggta agccggttaa aatacggttg ctcgaagtgc      1140
     ttttttttcc gggactggat ggtaatttgc tgtctgttgg aaaaatggca agtaaaggct      1200
     tcgtagtgca cttcacggat gtcggttgcg atattgtgaa cagttcgggt tgcgtcgttg      1260
     tcgtgggtga ccgtttcggt gcactgtata aactgaaatc agtggaacag gcaatgcagt      1320
     cggtcggtaa ttgtcatacg aagatgtgtc atgacttgtg gcaccggcgt ttcggccaca      1380
     gagatgcaaa tgctgtgaac aaagtaatta aagaaaaact tggaagtggt atgatcgtaa      1440
     cggagtgtcg aagagatgag gtgtgtgata cctgcctcga agggaaattg gcgcgcaagc      1500
     cgttcccgag tgtagtggaa agaaaggcga agcagatttt ggatctcgtt cacacagact      1560
     tgtgtgggcc tttcaacacc gccacgccga gtggcaatcg ttatttcctg agcctaatcg      1620
     atgactacag tcgatttact gttatctatt tgctgaaaga gaagtcggag gccaaggaga      1680
     aagtgaagga atttgtccac ttctgcaaaa actatttcgg ccggaaaccg aaggtcatca      1740
     gagctgatgg aggcggtgag tacgtaaata aagatctctg taatttttat gccaaggaag      1800
     gcattgttgc tcagtttacc accgcgtatt caccccaatc caatggagta gcagaacgca      1860
     agaataggtc actccaggag atggcctctt gtatgctcat agatgctgga atggagaaaa      1920
     agtattgggg tgaggctatt cgcacagcag cgttcttgca gaacaggttg ccgtctcgtg      1980
     tgattgaagg tacaccgtac gaaaagttct atggttcgaa accaaagttg gatcggctac      2040
     gtgtgtttgg ttgtgatgcc tacgtccaca ttccagacgt gaagcggcgc aagctggatc      2100
     ccagatcgag aaagctaact tttgtgggat acgctgaaga cagaaaagga tatcggtttt      2160
     tggatcgcgc cacagatacg atcactgtaa gcagagatgc aaccttcatc gagtggaaga      2220
     atggttctac tcaaattgag atcatccata cccgtaatga ttcgaaacga gagcctcagc      2280
     gtaagcacgg attgccggaa gcagaagttt cttcggatga cgagtattct gatgctaacg      2340
     tggatggaga tttccaagga ttagacgatg cagcagttca ggaggagcaa gtgaatggaa      2400
     attctaagaa gcagttacca tatcggaaga cgcggaacat gatgcctacc aagctaaagg      2460
     attacgtggt cggcattgcc atgtgcgccg ccaaagagtc aactgataat cgcgaagtta      2520
     agaagcaggt aaacgatggt gtgaccgtta cgaaaccggg gatatccaag acagtgctgg      2580
     atgcagtgat ggaaaatcac gaaggcaccg gcagattcaa gaagaagtgg taaagaggaa      2640
     gccgtaccaa actgtgagtt ggagattgag gaggag                                2676
//
ID   Copia-19_AA-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_AA_;
KW   Copia-19_AA-I; Copia-19_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-279
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 948-948 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 279 BP; 74 A; 71 C; 55 G; 79 T; 0 other;
     tgttgcagta tagcaatcac caactcccac cgagtacaac cctgtgcagc gggcgagtga        60
     gccgcatcag tgtaacactc tttcgcttgc tgtacacacc catacatacg agtcgggcta       120
     accaccgacg gtaccatcag agtgttcttc attcaatatt cgactgtgta acagtaaaga       180
     taataaagtt gtttctttcg ttcattcttt ataatagtaa aaccgcgttt gtgattcccg       240
     agagaaaact gttcccactg ttttgctagt ctgccgaca                              279
//
ID   Copia-19_CQ-I repbase;    DNA;    INV; 4032 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_CQ_;
KW   Copia-19_CQ-LTR; Copia-19_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4032
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 353-353 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1362-1889] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..4007
FT                 /product="Copia-19_CQ-I_1p"
FT                 /translation="MDANRFSIQKLNNDNYSAWRFKVELLLVREDLWRCVD
FT                 PGTKPAAESDETWKALDAKTRATVGLLIEDNQHGLIRGAATSKAVWTALQE
FT                 HHMKTTLTSKVSLLKRICDKRFADGEDMAEHLFAMEELFDRLKNAGQPLAD
FT                 TLQVAMILRSLPRSFDTLTTALESRSDADLTLELVKRKLLDEVAKRQGSAG
FT                 SDSALKVGAYGRSSKKKTLVCHRCKMEGHKQYECPQRGRHVDGDTKARRTK
FT                 PKKEDSVSFAFVAGGGAVADVTKPWVIDSGATSHTVADRCFFSELKNSEVH
FT                 VALYTPGLAMNLLSVPAIVKKNAKVLFDAGGCRILRGETTVAVGVLKQGLY
FT                 HLKQPEEVAYAASGHHNKDCKHVWHRRFGHRDLAAIARMEAENLASGLRVF
FT                 DCGVDEPCGSCLKGKSSRKPFPAESTTSTKATLDLVHTDVCGPVEVPSVGG
FT                 YRYFMTMIDDYSRFCVLYLLRNKSEVSDRIAEYVALVKTLFGRKPKTVRSD
FT                 QGGEYTGEKLRNFYKQEGIQAQFTAGYSPQQNGVAERKNRYLTEMVRCLLF
FT                 DANLPQCYWAEALSTAVYLQNLLPTKAVKSSPFEMWHGTKPDVAKLKVFGC
FT                 KAWVHVPKEKRKKLTGTARELTFVGYSLEHKAYRFLDRSTQKVIVSRDVRF
FT                 VESASAEVGHQNGDAKPVTVTSREETVVFDSVLNKPVPKPDEPALEQERAP
FT                 EAEPECPMDGDNPAELDAEEEDASFRSALSDEEEFNGFSDVSPSSSTEDTT
FT                 NKTGSTTPLRRSDRLTKGIPPERYQNATNVTKHTVREPRSYLEAVQGPEKA
FT                 AWLAAMKEEIKSLQENQTWELVELPPGRKLVGCKWTFKKKEDESGRVVRHK
FT                 ARLVAQGFSQRYGTDYDEVFAPVAKQTTLRTLLTIAARDDMLVRHLDIKCA
FT                 YLYADLDESIFMKQPPGFQSDDNLVCRLKRSLYGLKQSARVWNAKIDGIFK
FT                 QMGFQPGVADTCLYVKKTDKQMSFIAIYVDDMVIFCHSEKEFSRIRTTLEG
FT                 QFKLSTLGELRQFLGIHIEKIDGHYTLNQRSYIEKLLGRFGCEEAKPSKIP
FT                 LDPGYVKQKEETNLPTNTSYRSLVGSLLYVAVNSRPDICIGTSLLCRKVSN
FT                 PSDRDWTEAKRTLKYLKGTKDLRLHLGNGDAGLECFVDADWAGNEGDRKSN
FT                 SGLIIKFGGGVVSWSTRKQTCVALSSTEAEFVALAEGCQELLWAKKLLNDL
FT                 AEDNQESVVVWEDNQSCIKMVESDRVERRSKHIDTKYAFTKDLHQRGVIDL
FT                 RYLPTDEMVADVMTKPLDRTKLELHRNTLGVK"
XX
SQ   Sequence 4032 BP; 1042 A; 1049 C; 1165 G; 776 T; 0 other;
     ggttatgggc ctgagttcga cgtagaaatc ggaggaacaa aagaaatttt cgacgccatt        60
     gcaaaagttg accgcgtgtc gcgaaattac ttgttttatc gcgaaaatcg aatagttttc       120
     tcgtgaaaat ggacgctaat cgctttagca ttcagaagct gaataatgat aattattctg       180
     catggagatt caaagtggaa cttctccttg ttcgcgagga cttgtggcgt tgtgtcgatc       240
     ctggcacgaa gccagctgcg gaaagtgatg agacgtggaa ggcgctggac gctaagacgc       300
     gggccaccgt cggcctactg atcgaggata accaacacgg gttgatccgt ggagctgcga       360
     cctcgaaggc cgtctggaca gcgttgcaag agcatcacat gaaaacgacg ctaacctcaa       420
     aagtttcgct cttgaagcga atctgcgata aacggttcgc ggatggcgag gacatggcgg       480
     aacatctgtt cgctatggag gaactcttcg atcggttgaa aaatgccgga caaccgcttg       540
     cggacactct tcaagtcgcg atgattttaa gaagtctgcc gcgaagtttc gacaccctga       600
     ctacggctct cgagagccgt tctgacgctg atcttactct ggaactcgtc aagcgaaagc       660
     tactggacga ggtcgcgaaa cggcagggat ccgccggaag tgattctgca ctgaaagtcg       720
     gtgcttacgg acgcagcagc aagaagaaga cgctggtctg ccaccgatgc aaaatggagg       780
     gccacaagca atacgagtgc ccgcagcgtg gtcgccacgt ggacggcgac acaaaggcga       840
     gaagaacaaa gccgaagaag gaggacagcg tctctttcgc ttttgtcgcc ggcggcggtg       900
     ctgtagctga cgtcactaag ccgtgggtca ttgactccgg ggctaccagc cacacagttg       960
     cggatcggtg tttttttagt gaactgaaaa acagtgaagt gcatgtcgcg ctgtacaccc      1020
     ctggtcttgc catgaactta ttatcagtac cggcaatagt gaaaaagaac gcaaaagtgt      1080
     tgttcgacgc tggtggttgc cggatcctgc gaggcgagac aacggtagcg gtcggcgtgc      1140
     tgaagcaagg attgtaccac ctgaaacaac cggaggaagt cgcgtatgcc gccagtggac      1200
     accacaacaa ggactgcaag cacgtttggc acagaaggtt cggtcaccgg gacctggccg      1260
     ccatcgcacg gatggaggcg gaaaacctag caagtgggtt gagagtgttc gactgcggag      1320
     ttgatgagcc ctgtggaagc tgccttaaag gaaagagctc acgcaaaccg tttcccgcgg      1380
     agtcgacaac cagcaccaaa gcgacgttgg acctggtgca taccgacgtg tgcggcccgg      1440
     ttgaagtacc ttccgttggc gggtatcgtt atttcatgac catgattgac gattactccc      1500
     gcttctgtgt gctctacctg ctgaggaaca agtcggaggt ttcggacaga atcgccgagt      1560
     acgtcgccct cgtgaaaacc ctcttcggcc gaaaacccaa aaccgtgcgc tcagaccaag      1620
     gaggagagta caccggcgaa aagctgcgca acttctacaa gcaggaggga atccaggcgc      1680
     agttcacggc gggctacagt ccgcaacaaa acggagtggc ggaacgcaaa aaccgctacc      1740
     tgaccgaaat ggttcgctgc ctcttgttcg acgccaatct tccgcagtgc tactgggcgg      1800
     aagctttgag cacggctgtg tatctccaaa atctccttcc aacaaaggcc gtgaagtcgt      1860
     ccccgtttga gatgtggcac ggaaccaagc cggacgtggc gaaactgaag gttttcgggt      1920
     gcaaagcgtg ggtccatgta ccgaaagaaa agcggaagaa gctcactgga acagcccggg      1980
     aactcacctt tgtcggctac tccctggaac ataaagccta ccgattcctg gaccgaagca      2040
     cacagaaggt gattgtcagt cgggacgtgc gtttcgtcga aagtgcgtca gctgaggtcg      2100
     gtcatcagaa cggtgatgcg aagccggtca cggttaccag ccgagaggag acagtggttt      2160
     tcgattcggt actcaacaaa cctgtaccga aacccgatga accagcgctg gaacaagaaa      2220
     gagcaccgga agcagaaccc gagtgcccta tggatggcga caacccagct gaacttgacg      2280
     cggaagaaga ggacgcatcc ttccgctccg cactgtccga tgaagaggag ttcaacggtt      2340
     tcagtgacgt ttcgccaagt tcgtccaccg aagataccac caacaaaact ggcagcacaa      2400
     caccacttcg aagatccgac cggctcacga agggcattcc acctgagcgg taccaaaacg      2460
     caaccaacgt gaccaagcac actgtcaggg agccccgatc ttacctggaa gcagtccaag      2520
     gtccagagaa agccgcctgg ctggcagcga tgaaggagga gatcaaatcg ctgcaagaaa      2580
     accagacctg ggagctcgtg gagctgccgc ccggaaggaa actcgtcggc tgtaagtgga      2640
     cgttcaagaa gaaggaggat gaaagtggcc gcgtcgtgcg gcacaaagcc aggttggtcg      2700
     cacagggttt ctcccagcgg tacggtactg actacgacga ggtgtttgca cctgtcgcca      2760
     aacagacaac gctacgaacg ctgctgacga tcgccgctcg ggacgacatg ttggtaagac      2820
     atctggacat taagtgtgcc tacctctacg cggatcttga cgaatccatc tttatgaaac      2880
     agcctccggg attccagtcg gacgacaacc tggtgtgccg actaaagcgc agtttgtacg      2940
     gcttgaaaca gtcggcgcgg gtctggaatg caaaaatcga cggcatcttc aagcagatgg      3000
     gattccagcc cggcgtggcg gacacgtgcc tctatgtgaa gaagacggac aagcagatga      3060
     gtttcatcgc gatatacgtg gacgacatgg tcatcttctg ccattccgag aaggagttca      3120
     gccgaatccg tacaacgctg gaagggcagt tcaagctgtc tactttggga gagttgcgcc      3180
     agttcctcgg aatccacatc gagaagatcg acggccacta cacgctgaac cagcgtagct      3240
     acatcgagaa gctgctcgga cggttcgggt gcgaggaagc taagccgtcc aagatcccgc      3300
     ttgaccccgg ctacgtaaaa caaaaggagg agacaaattt gccgacaaac acgtcgtacc      3360
     gttcgttggt gggtagtttg ttgtacgtcg cggtcaactc ccggccggac atctgcatcg      3420
     gaacttcgct gttgtgcagg aaagtgtcta atcccagcga tcgcgactgg acagaagcca      3480
     aacgcaccct gaaatacctg aaaggaacca aggacctccg tctgcacctt ggtaacggag      3540
     atgcgggact cgagtgcttc gtcgacgcgg actgggccgg taacgaaggc gaccggaagt      3600
     caaactctgg tctgatcatc aaattcggcg gtggagtggt gagctggtcg acacgcaaac      3660
     aaacctgcgt cgccctatcg tccaccgagg ccgagttcgt cgcccttgcc gaaggttgcc      3720
     aggagctgct gtgggcaaag aaactcctta acgatctcgc cgaggacaac caggaatccg      3780
     ttgtggtgtg ggaggataac caatcctgca tcaagatggt agagtcggat cgcgtcgaac      3840
     gtcggtccaa acacatcgac acaaagtacg cgttcaccaa ggatcttcac cagcgcggag      3900
     tcattgacct ccgttacttg ccaacagacg aaatggtcgc ggacgtcatg accaaaccac      3960
     tggaccggac caagctggag ctgcaccgta acacactcgg tgtcaagtaa acttctttgc      4020
     gttgaggagg ag                                                          4032
//
ID   Copia-19_CQ-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_CQ_;
KW   Copia-19_CQ-I; Copia-19_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-184
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 354-354 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 184 BP; 62 A; 44 C; 27 G; 51 T; 0 other;
     tgttggcaca atcgtgctag caactacaaa aagtccataa gacgattcgt ttcagtgcag        60
     aatttattta cacacacaga cacacatacc aatgtatata acacaataaa ttcattcgaa       120
     aagtagttct ctccggacac ggacgtgttc tttatttcaa tccgctgctc gtaaaactcc       180
     taca                                                                    184
//
ID   Copia-19_SI-I repbase;    DNA;    INV; 4078 BP.
XX
AC   AEAQ01024750;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_SI_;
KW   Copia-19_SI-LTR; Copia-19_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4078
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024750; Positions     359    4436.
XX
CC   Positions [1610-2071] - Integrase core
CC   'GAAAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1658..4045
FT                 /product="Copia-19_SI-I_1p"
FT                 /translation="MTLIDDFSRYCFVYLLKEKSEAARRIMEFVILCDTQF
FT                 GRKPKLLRTDQGREYLSTELQTFLKDNGIVHQTTASYSSQQNGVAERKNRS
FT                 LIEMARCMLIEAELPHTYWGEAVITANYLQNRLPSRAIDKTPYELWFDRTP
FT                 NVHYLRTFGCKAFMHVPDEKRRKLDNKAIELRLVGYSETVKGYRLLNTITN
FT                 KIYVSRDVKFIEKIYRKSYFELTDDSVEENHSPKIPIPSKIESSEHASSEF
FT                 ITNEPAPQAEETIRKSSRSTKGIPPQRLIETCKLVSCSIPEEPLTYEQAIS
FT                 SPENKHWKQAMEEEIASFQKNRVWTLTKLPSDKKVIGGKWVFKRKLDDKGN
FT                 ISRYRARFVAQGYLQVYGEDYDEVFAPVAKQATFRTLLTIAGKRNMSVQHY
FT                 DIKTAFLNGELEEDIFMKQPAGFSVEGKEELVYKLHRSLYGLKQSARAWNQ
FT                 KIHDVLTKEEFKRANADKCLYSRGSNGKWTYILIYVDDLIIASDNKDQIKK
FT                 LEEKLSQVFNLCNLGKLKFYLGIHIEQESDGMFAIHQRTYIDRIIERFGLK
FT                 DAKPSKIPLDPGYEKFKELSEKLPNNKQYRSAIGALLYLSTYTRPDIAAAT
FT                 SILSRKISAPTEADWEEVKRVIRYIKGSRHLRLKLGEDNTNEDTALIGYAD
FT                 ANWAGDVTDRKSNSGFVIKLYGAPISWASRKQTCVALSSTEAEYVALSEAC
FT                 QELWINRLLNDFNICLKEPGILYEDNQSCLKMLDSEKMSNRTKHIDTKYHF
FT                 CKELKTNQQVHFYYCPTSEMIADILTKPLEAVKTRQHVSGLGLIN"
XX
SQ   Sequence 4078 BP; 1486 A; 702 C; 843 G; 1047 T; 0 other;
     aaggttatgg gcccaggaca catcttgcat ataaaacgaa atagataaaa gtaagttaac        60
     ctcaaaaatt ctttctgaag acgctataaa cgtgtggatt catacaagga ttgttgcaaa       120
     aaaaacgtgt ctaaaatggc agatattgca aaaatcagtg tagagaaatt gaataatagc       180
     aactatcaaa cgtggaaata cgaggctgaa ctcgttcttt gacgtgaaaa cacgtggttt       240
     gcagtcacca cagatcctcc tgccgcgaca gaaaaaggat atgaagcttg gacacaggcg       300
     gatagtaaag ccataggcac aatcggtttg cttgttgaaa agggtcaaca tgtgcacacg       360
     agaccagcaa aatcagcaaa agaagcatgg gaaaacttaa agaagcatca tgaaaaggca       420
     agtctttcat ctaccgttca tttgtatacc aaattagcta acacaaaatt ggcagaaaat       480
     ggtaacgttg aatcgatact ccatgaaatc gaatgtattc ttgaccacct tgtcgctgta       540
     ggagagccag ttaccaagaa acttaaaatt ggtatgatgt taggaagttt acctagcagc       600
     tacggtacgc ttattactgc ccttgaatgt cgtgcagaaa acgatctaac tgttgaaatg       660
     gttagagaga aaatactcgg ggaatacaca cgccgaagaa ctgcaaacga gggtacacaa       720
     gaactaaccg aaacagcact gaagatcaag aaagaaacat ggaagaaaga taaaaaagaa       780
     aaaaaagagg gctaaaatgc gttttttgtc ataagcaggg acacatacaa gaaaaatgtt       840
     acaagtatct cgcacaattg cagttgaaaa atactggaag tgaaaaacag caaactgcaa       900
     aaatcgttaa gcaaattcca gaaaattctg aggaaggatc atcgaaatca agcaatgatt       960
     ctgaactatt ttgctttaag acgagcatgg gcgatcaaga tgcatggtac gtagattctg      1020
     gagcttcctg tcatttaact aataataaaa gttattacaa cagattcaat aagaatgtct      1080
     gtgaaataat aacattagca gacgggcgca agacaaaatc tgaaggaaca ggagatataa      1140
     cactttcttg cagcaatgac aacggaaatg taaagcatgt tcaggtaaaa agcgttcgat      1200
     atgtgccaaa tttagattgt aatcttcttt cagtacgggc gctcacttca cgaggcatac      1260
     gtgtgaattt ccttgagaat cgatgtgaga tcataaatgg tgatgtcatt gttggaactg      1320
     ctgatgctgt acatggtttg tttaaactgc gttgtacaca gaaagtgttg atgactacaa      1380
     atggatcaca tgaaaaatgt atacacactt ggcatcgacg ttttggacat cgtaatcctg      1440
     aagctataaa actgttagag agtaagtcga tggcatgcgg aatcaagatt gaaaaatgta      1500
     atgagcgttt tccatgtgaa acgtgtacaa aaggaaaatt tacacgtttg ccatttccaa      1560
     agaaatctag tcagcagtca aagatacctc tagatttaat acacagtgat ctttgtgggc      1620
     cgatgcagac aagacaccga gtaataaacg ttacataatg acattaattg atgattttag      1680
     tcgttactgt ttcgtatact tgttaaaaga aaagagtgaa gctgctagaa gaataatgga      1740
     attcgtcatt ctatgcgata cacagttcgg acgtaaacca aaattgttaa ggacggatca      1800
     aggtcgcgag tatctaagta ctgaactaca aaccttctta aaggataatg gcattgtgca      1860
     tcaaacgact gcatcatact cctcacagca aaatggagtt gctgaacgca aaaataggag      1920
     tctcatcgaa atggcacgat gtatgctcat cgaagctgaa ctacctcaca cttattgggg      1980
     tgaagcagta ataactgcca attatctgca aaatcgctta ccttcgagag caatcgataa      2040
     aacaccctat gaactctggt ttgatcgcac tcctaatgtc cattatttac gaactttcgg      2100
     atgtaaagct ttcatgcatg ttccagatga aaaaagaaga aagttggata acaaagcaat      2160
     agagcttcga ctagtaggtt attccgaaac tgtaaaaggt tatcgattac tcaatacgat      2220
     tactaataaa atatatgtta gtcgtgatgt caaatttatt gaaaaaatat atcggaagag      2280
     ttattttgaa ttgactgatg attcagtaga agagaatcat tctccaaaaa ttccaatacc      2340
     ttcaaaaatc gaatcttcag agcacgcctc ttcagagttc ataactaatg aaccagcacc      2400
     tcaagcagaa gaaacaatcc ggaaatcatc gagatctacg aaaggtattc caccacaacg      2460
     actaatagaa acatgcaagt tggtttcatg ttctatacct gaagaaccgc tgacatacga      2520
     gcaggctata tctagtccag aaaataaaca ctggaaacaa gctatggaag aagaaatagc      2580
     atcgtttcag aagaatcgcg tatggacttt aacaaaattg ccttcggata aaaaggtcat      2640
     cggaggaaaa tgggtgttta aacgaaaact cgatgataaa gggaatatta gtcgttatcg      2700
     tgctcgcttt gttgcccagg gttatttgca agtatatgga gaagactacg atgaagtatt      2760
     tgcaccggtg gcaaaacaag caacatttcg tacgcttttg acaatagcag gcaaacgaaa      2820
     tatgtcagtg caacattatg atataaaaac agctttctta aacggcgaat tagaggaaga      2880
     tatttttatg aagcagccgg caggtttctc tgttgaaggt aaagaggaac ttgtatataa      2940
     actacatcga agtctttacg gactgaaaca atcagcaaga gcatggaatc agaagattca      3000
     cgacgtactg acaaaggaag aattcaaacg cgccaacgct gacaaatgtt tatattcaag      3060
     aggatcaaat ggaaaatgga catatatttt aatatatgtt gatgatctca tcattgcaag      3120
     tgataacaag gatcagatta agaagttaga agaaaaactt agtcaagtgt ttaatttatg      3180
     caaccttggt aaattaaaat tctatcttgg gattcacatc gaacaagagt cagatgggat      3240
     gtttgctata catcaacgta catacataga ccgaattatt gaacgttttg gtttaaaaga      3300
     tgcgaaacca tcgaaaattc cattggatcc aggatatgaa aaatttaagg aattatcaga      3360
     gaaattgcct aacaataagc aatatcgtag tgcaatagga gcattattgt atctgtccac      3420
     ctacacacga ccagatatcg cagcagcaac atctatctta agtagaaaaa taagcgcacc      3480
     aaccgaagcc gattgggagg aggtgaagcg cgtaatcaga tacatcaaag gatctaggca      3540
     tttgcgtcta aaattaggag aagacaatac caacgaagat actgccttga ttggatatgc      3600
     tgatgcaaat tgggcgggag atgtaacaga tcgaaaatca aattcaggat tcgtaattaa      3660
     actttatgga gcaccaatca gttgggcaag tcgcaagcaa acgtgtgtgg ccttatcttc      3720
     tacagaggct gaatatgttg cactctccga agcctgtcaa gaactatgga ttaaccgatt      3780
     attgaatgat ttcaatattt gtctaaaaga accaggtata ttatacgagg acaaccagag      3840
     ctgtctcaag atgttggact ccgagaagat gtcaaatagg acgaagcata tagatactaa      3900
     gtatcacttt tgtaaggaat taaaaacgaa tcaacaagtt catttttatt actgtccaac      3960
     atctgaaatg attgcagaca tcttaacgaa gccacttgaa gctgtaaaaa cacgtcaaca      4020
     tgtatctggg cttggtttaa ttaattaaat gttccatagt cataactttg agagggga        4078
//
ID   Copia-19_SI-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   AEAQ01024750;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-19_SI_;
KW   Copia-19_SI-I; Copia-19_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-307
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024750; Positions      52     358.
XX
SQ   Sequence 307 BP; 92 A; 50 C; 34 G; 131 T; 0 other;
     tgttaaaatt attttattat taataatttt ttgttcaacg ttatgattgt atacatgcaa        60
     ttttttttaa taggttctct aaagtcacaa ttttaatttt gtttatgcat ctactatact       120
     tttgtctatg gttgtgccta actgatctta ctcatctctc atctctctct ctctatgatg       180
     tctttgtgta acttgcttat agataagcga tttgtattcg tataagaaaa atatattcac       240
     tcaaggaaat acaagtacat tcgtatattc aagattgatc catccatcaa atcctcaaat       300
     ttcaaca                                                                 307
//
ID   Copia-1_AA-I repbase;    DNA;    INV; 2552 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_AA_;
KW   Copia-1_AA-LTR; Copia-1_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2552
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 937-937 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1371-1874] - Integrase core
CC   'TTTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           102..2492
FT                 /product="Copia-1_AA-I_1p"
FT                 /translation="MAEQRLPGFPLTKLNNHNFQSWKFKMEMMLVREELWH
FT                 VIAEERPDPVTDTWKKADAKARATIGLCMEDNQTSLIRSCTCAKDAWKSLK
FT                 DYHDKGSEVYLLKKLTRLELSEDGDMEQHLQSFTDLVQRIADVGDEVPPKL
FT                 QVALLLCSLPDSYDSLATVLEQRPRNELTIDLVKSKLLSEAEKRREKLGNT
FT                 AGSSEKALRADYWKNRGGDREVGKDTRACFHCKKPGHIKRNCRILQREISS
FT                 SQDSSRKDEELCSGLQQKETAKAKQAQSVMEGPIAFMTGQGELSDWFVDSG
FT                 ASRHMTGNESFFAELKSTIGVSVLLANGEKAEAKGIGSGCIVGIDSVGAPV
FT                 DIQLNDVLFVPNLTSGLISVSALARKKFSVDFSANQCEIKNKAGIVVVVAD
FT                 RCGSLYRLCTPDRMLCDQGKGRKINSRKSRVTNKVEKAQKRLDVVHISLSD
FT                 LMVNTPSGNKHYLTFVDEFTGMTFVYFLRKKSDVCFKMMDFIDFCKTKCGE
FT                 MPKMILQDGGKEFMDTDLQRVLDNEGISVSFSPPNSAVAQKKSRYLKKIAE
FT                 CMLIDSKLDRKYWGEAISTATHIQNRSTSKFKSISSFERWFGQKPNIGNFR
FT                 RFGSKALVRISATMQEKALIFVGYSNQNQAYRFLDLKSGGIFVSRSVKFME
FT                 GAGIRRGHPPDECLQESIVILEPLIPDEERLVRQEELSQQRVRVKQVADES
FT                 VHPEDDLEYQADDTLSFESCEEVLYSDDQVQTGTEKAIEPQPDSSRPGRST
FT                 KGVLPTRYKDYVVSPFPKKQQKPVVLHDDFKACSVDEIWPSTAQSN"
XX
SQ   Sequence 2552 BP; 764 A; 449 C; 683 G; 656 T; 0 other;
     ggttatgggc gccagtatta attctcgaaa ccattagtaa tttgcggtcg aaaatatcgt        60
     gattgttcga acagtgatta cagcgagtgg aagaaaataa gatggcggaa caacgattac       120
     caggattccc actcacgaag ctcaataacc ataatttcca atcatggaaa tttaagatgg       180
     agatgatgtt agtgcgtgag gagctatggc acgtgatagc ggaggaaagg cctgatccag       240
     tcactgatac ctggaagaag gcggatgcga aagcccgagc cacaataggt ctttgtatgg       300
     aggataatca gacaagcctg atacggagtt gtacctgcgc aaaggatgca tggaagtctt       360
     tgaaagatta ccatgacaaa ggatcagaag tctacctgtt gaaaaagctt actcgtcttg       420
     agctatcgga ggacggagac atggagcagc atcttcagag ttttacggat ctagtgcaaa       480
     ggattgcgga tgtaggtgat gaggttccac cgaaattgca agtagctctt ttgttgtgtt       540
     cacttccgga ttcctatgat tccttagcaa ccgttttgga acagaggcca agaaacgagc       600
     ttaccatcga tttggtgaag tcgaaactgc tttcggaagc cgagaaacga cgtgaaaagt       660
     tgggaaacac tgctggatca agtgaaaagg cactgcgagc ggattactgg aaaaaccgtg       720
     gaggtgatcg agaagttggc aaggatacac gggcatgttt ccattgcaaa aagccaggtc       780
     acattaagcg gaattgcagg attcttcaga gagagatttc gtctagtcag gattccagtc       840
     gaaaggatga agaactatgt tcgggattgc agcagaaaga aacggcgaaa gcgaagcagg       900
     cacaaagcgt aatggaaggt ccaattgctt tcatgactgg tcaaggagaa ctgtctgact       960
     ggtttgttga tagtggcgca tctcgtcaca tgacaggtaa cgaaagcttt ttcgctgagt      1020
     tgaaatccac gattggtgtg agtgtgttgt tagccaacgg agagaaggca gaagctaagg      1080
     gaattggcag tggttgtatt gtcggaatag acagtgttgg tgctccagtt gacatacagt      1140
     tgaatgacgt tctatttgtt ccaaatctga ccagcggatt gataagtgtt agtgcactag      1200
     caagaaagaa attctccgtc gatttcagtg caaatcaatg tgagatcaaa aacaaagcag      1260
     gcattgttgt ggttgttgct gatcgttgtg gaagcttgta tcgtttgtgt accccggatc      1320
     gaatgctgtg tgatcaagga aaaggaagga aaataaactc gaggaaaagt cgtgttacga      1380
     ataaggttga aaaggcacag aaaagactgg atgtggtgca tattagtttg agtgacttga      1440
     tggtaaacac gcctagtggt aacaaacact atcttacttt tgttgacgag ttcaccggaa      1500
     tgacttttgt ttactttctc cggaagaaat cagacgtgtg tttcaagatg atggatttta      1560
     ttgacttttg caagacgaag tgtggtgaaa tgccgaaaat gatcctgcag gatggtggaa      1620
     aagagttcat ggataccgat ctacaacgtg ttctggacaa cgaaggaata tctgtatcat      1680
     tttcacctcc gaatagtgct gtggcgcaaa agaagagtcg ttatttgaag aagatcgcgg      1740
     agtgtatgtt gattgattct aaacttgatc ggaagtattg gggtgaagct atatcgacag      1800
     caacgcacat tcagaatcga tcgacttcca aattcaagag cattagctct ttcgaaagat      1860
     ggttcggtca gaaaccgaat attggaaatt tcaggagatt tggttcaaaa gcgttggttc      1920
     gcatttcggc caccatgcaa gaaaaagcgt taatttttgt gggatattcc aaccagaatc      1980
     aagcatatcg atttctggat ctgaagagtg gaggcatatt tgtcagtcgt agcgtcaaat      2040
     tcatggaggg agctggaatc aggcgtggtc atcctcctga tgaatgtctg caggaatcga      2100
     ttgtcatatt ggagcctttg attcctgatg aagagcgatt agtgagacag gaggagctat      2160
     cacagcaacg agttcgggtg aagcaggtgg cagacgaatc tgtccaccca gaggatgatc      2220
     tggaatacca agcagatgat acattgagtt tcgaatcatg tgaagaagtt ctctatagtg      2280
     acgatcaggt gcaaactgga actgagaagg cgattgaacc ccaacccgat tcgtctcgtc      2340
     caggtagatc tacaaaggga gttttaccaa cacggtacaa agattacgtc gtcagtccgt      2400
     ttcctaagaa acaacagaaa ccagttgtac ttcatgatga ttttaaggcg tgctctgtgg      2460
     atgaaatctg gccatctaca gcacaatcca actgactgca ttttttcgaa tgatctgtag      2520
     gatcaacgca gggatgtttt cgcgaggagg ag                                    2552
//
ID   Copia-1_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_AA_;
KW   Copia-1_AA-I; Copia-1_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 938-938 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 226 BP; 69 A; 48 C; 34 G; 75 T; 0 other;
     tgttggcgta gacgacccta ttgccaaaaa tacgcgagca cacccctgca tatatgtgac        60
     atttcttaat attactaata catcaacatt tatgtattct aagaacgata ataaacagta       120
     tgatttattg cttcgccata gtaacagctc cgcactttat atatcggttt cgtgataata       180
     tagctttttc gacggtttat cgttctatat tcctgaacag ccaaca                      226
//
ID   Copia-1_AnFu-I repbase;    DNA;    INV; 3977 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3977
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2886-2886 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..3927
FT                 /product="Copia-1_AnFu-I_1p"
FT                 /note="gag, zinc finger, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MGQDGINFDKLDGRSNFSTWEKKMAAFLRTKDLYKCV
FT                 LPAPQTEKDEEKLSRAAGWIFLACEDHITHHFGKDDTPLQIWEALRKTFAE
FT                 TGQGLHLQAVMTLSHTYRADCESNDEYVGRMMEAWRRCTEVGIKFEDNIVA
FT                 LFMVGNLGPKYESFRQSLIGSGQKITVDRVKAGLLELTPVQGQEAETAYYS
FT                 GPRPRKEQPKKNKSHIKCFKCGKTGHFKNKCTSGGDGSGSSGSSGSGGGVN
FT                 SNRIAEAKFASALSASFGEMPGGWYLDSGASCHMTSRREILSDFRASEKQT
FT                 ITVADDRKLKVEGCGSAVVTIGGKQLLLRNVLFVPHLKANLISLDVASRTG
FT                 HRIVIANGVCKLIKESCGSVLIEAPSVGGVFRIEAKNVKCMLAKDDELIEW
FT                 HRKMGHMSYKGLKNLKKVSRGVQFEGTQEDIRGCISCAEGKQTRAPFRKKD
FT                 VTIKTTGILELVHTDVCGPMSTSLGGSRYFAVFIDDYSRKVFVYFFKEKSA
FT                 VVEIFRRFKAEVENQTGVRIKRLRSDNGTEFVNREMTKICETSGIIHEKTP
FT                 PYTPELNGVSERMNRTLIERARCMMSDGNLNRALWAEAVQHAAFIVNRSPN
FT                 RSIRNRCPEEIWTGKVQNLASLKIFGNPAMVLLPKIARTKWDPKSVEMQFV
FT                 GYSGNVFRFYWPKTRRVFTSRDATFLPYRPNKTGSLFIVDDDDDARSIKTS
FT                 VGVANPMLKESETDTVPKAEDESQLVSSGEEEYKDADSNSDDDSENNEIEE
FT                 QPILRRSQRISRPVIREDFISYFTRDCGPDDPEDREDALKAHDAKLWLEAM
FT                 KDELSSFERNQTWTLVDLPPDRKPIRTKWVFKRKRGEDGSIVRHKARLVAK
FT                 GCSQQPGIDFKETFSPVVRYESMRLLIALAAQNGMNIDQMDAVSAYLQGPI
FT                 DEEIYVLQPEGYEDGSGKVYRLNKAMYGLKQSGRCWNNCLDNALLSFGLRK
FT                 SAEDPCVYYNKESSLFIAIYVDDILMYWRDADVRDNLKQKLTSAFHMKDMG
FT                 RARTCVGMTITYEKDFISINQSKYAEEVLERFGMQNCKAAASPCDVSQKLT
FT                 AQPDGGPQMNIPYREAVGALLFLVQGTRPDLAFAVSNVSRFNEKHNETHWI
FT                 AVKRILRYLRGTTNLGIAYRRGSGEPLTGFVDADWANDQDERRSFSGYVYK
FT                 LAEGAVAWSCKRQQCVAVSSTEAEYVAIAHAAKEAVWLFRFIRQFRELNSI
FT                 LLHCDNQSALVMTKREAFSPRAKHIDVSFHFVRNLVKDGLLTMKYVSTTSN
FT                 LADCLTKGVCGPKMLSSTNGFGMLKT"
XX
SQ   Sequence 3977 BP; 1203 A; 760 C; 1040 G; 974 T; 0 other;
     ggttatgggc ccaggttacg cctagcagag tgaagaactt aaaagagcag ttaattaatt        60
     tccaagatgg gccaggacgg cattaatttc gataagttgg acgggcgttc taacttttcg       120
     acatgggaaa agaaaatggc tgcctttctt cgtacaaagg atttgtacaa atgtgttctt       180
     ccagcacctc agaccgaaaa ggatgaagaa aaactgtcgc gagctgcagg atggatcttc       240
     ctggcatgtg aagatcatat cacacaccat ttcgggaaag acgatacacc gctgcaaatt       300
     tgggaagctc ttcggaaaac ttttgctgaa accggacagg ggttacatct acaggcagtg       360
     atgacgcttt cgcacacata cagagccgat tgtgaatcga atgacgagta tgtggggcgg       420
     atgatggaag cctggagacg ctgcaccgaa gtaggtataa agttcgaaga caacatcgtg       480
     gcgttgttca tggtcggtaa tttgggacca aagtacgaat cgtttcggca gagcctcatc       540
     ggaagcggtc aaaagatcac ggtggatcga gtaaaggcag ggttgttgga attgacgccg       600
     gtccaaggcc aggaagcaga gacagcatac tacagtggac cgcgtccgcg taaagaacag       660
     ccaaagaaaa acaagtcgca tataaagtgt tttaagtgcg gaaaaacagg acactttaag       720
     aacaaatgca ctagtggtgg tgatggttct ggaagcagcg gtagtagtgg tagtggcggc       780
     ggtgtaaatt cgaacaggat agcagaagca aagttcgcaa gcgcattgtc tgctagtttc       840
     ggtgaaatgc cgggtggatg gtaccttgac agcggagctt cgtgtcacat gacgtcgaga       900
     cgagaaatac tcagcgattt tcgtgcttcc gagaaacaaa caatcactgt tgccgatgac       960
     aggaagctga aagtggaagg ttgtggatca gccgtcgtga cgattggtgg aaagcaactg      1020
     cttttaagaa acgtcttgtt tgttccacat ctgaaagcga acttgatttc gcttgatgtg      1080
     gcatcgcgca caggtcatcg gattgtgatt gcaaatggcg tgtgcaaatt gatcaaagaa      1140
     agctgtggtt cagttttgat tgaagcaccg tcagttggag gagttttcag aatagaagct      1200
     aaaaacgtaa aatgtatgct tgctaaggac gacgaactaa tcgaatggca caggaagatg      1260
     ggacacatga gctacaaagg tttgaagaac ctaaagaaag tgagcagagg tgttcaattc      1320
     gaaggtacgc aagaagacat tcgtggttgc atcagctgtg ctgaaggaaa gcagaccaga      1380
     gcgccgtttc gcaagaaaga tgtcaccatc aaaacaacag gtattttgga gcttgtgcac      1440
     acagacgttt gcgggccgat gagcacgtca ttaggcggat ccagatattt tgctgttttc      1500
     attgatgatt actccagaaa agtatttgta tatttcttta aagaaaaatc agcagttgtc      1560
     gagatattcc gcaggttcaa agcggaagta gaaaaccaga cgggtgtacg tataaagcgg      1620
     cttcgatcag acaacggcac agagttcgtc aacagagaaa tgaccaaaat ttgtgagact      1680
     tctgggatta tacacgagaa gacaccgccc tacacgccag agctaaacgg tgtatcagag      1740
     cggatgaatc ggacattgat tgaacgagca cgttgcatga tgtcggatgg aaatctgaat      1800
     cgagcgcttt gggctgaggc cgtgcaacac gctgctttca tagtcaacag atcaccaaat      1860
     cgttccattc gtaatcggtg tccggaagaa atctggacag gaaaagtgca aaaccttgca      1920
     tcgttgaaga tttttggaaa tcctgctatg gtgcttcttc caaaaatagc acgaacaaaa      1980
     tgggacccca aatctgtgga gatgcagttc gtcggctatt ctggtaatgt atttcgattc      2040
     tattggccaa aaactcgacg tgtattcacc agccgagatg cgacgtttct tccgtacaga      2100
     ccgaacaaga ctggttcgtt gtttatcgtc gacgacgacg atgatgccag aagcataaaa      2160
     acttcagttg gggtagctaa ccctatgtta aaagaatcag agacagatac tgtacctaag      2220
     gccgaggatg aaagtcagct tgtttcttct ggtgaggaag aatataaaga tgcggatagt      2280
     aacagtgatg atgatagcga gaacaatgag atagaagaac agcctatcct gagaagatcg      2340
     cagcgaatat ctcgtcctgt cattcgtgag gattttatta gctacttcac aagagattgc      2400
     ggcccagacg atcctgaaga tcgtgaagac gcgttaaagg cgcatgatgc aaaactctgg      2460
     ctagaagcaa tgaaagacga gttgtcttca ttcgaaagaa accagacgtg gacattagta      2520
     gatcttccac cagatcgcaa acctatacga acgaaatggg ttttcaaaag aaagcgtggg      2580
     gaagatggct ccatagtgcg gcataaggcc cgcttagtag ctaaaggttg cagccagcaa      2640
     ccaggtatag acttcaaaga aacgttttct cccgttgtac gatatgaatc catgcgtctg      2700
     ctgatagcat tagctgctca gaatggaatg aacattgacc aaatggatgc tgtttcagca      2760
     tatttgcaag gaccaataga tgaggaaatc tatgttttgc aaccggaagg ctacgaagac      2820
     ggttcaggaa aagtctatag acttaataaa gccatgtatg ggcttaagca gagcggccga      2880
     tgctggaaca actgcttgga taacgcacta ttgtcatttg gacttcgaaa atcagcggaa      2940
     gacccatgtg tttattacaa caaagagagc agtcttttta tcgctatata cgtggacgac      3000
     atcttaatgt attggagaga tgctgatgtt cgtgacaatt tgaagcagaa gttaaccagc      3060
     gccttccata tgaaagatat gggtagggct agaacgtgcg taggaatgac tattacttat      3120
     gagaaggact tcataagcat caaccaaagc aaatacgctg aagaagtgct ggagcgtttt      3180
     ggaatgcaaa actgtaaggc tgcagcttca ccatgcgatg tctcccagaa gctcacggcg      3240
     caaccggatg gtggaccaca gatgaatata ccatatcgtg aggctgttgg tgctttgcta      3300
     tttttagtac aagggacaag gccagactta gcattcgcag ttagcaatgt cagtcgcttt      3360
     aatgagaagc acaacgaaac gcattggata gcagtgaaaa ggattttgcg ttatttaaga      3420
     ggaacgacca atcttgggat tgcttatcgt cgtggttcag gcgaaccact aactggtttt      3480
     gttgatgcag actgggctaa tgatcaggac gagcgtcgat cattctctgg atatgtgtac      3540
     aagttggcag aaggtgctgt cgcttggtca tgtaaacgac aacagtgtgt agccgtctcc      3600
     agtacagaag cggaatatgt agctattgct catgctgcaa aagaagctgt gtggcttttc      3660
     cgtttcatcc gacaattcag agaattaaat agtattttgc tgcattgcga taaccagagt      3720
     gcactggtta tgacaaaaag agaagctttc agtcctagag ctaaacacat cgacgtcagt      3780
     tttcattttg tgcgcaactt ggttaaagat ggattgctca caatgaaata cgtgtcgact      3840
     actagcaacc ttgctgattg tttgacgaaa ggagtatgtg gccccaaaat gcttagctct      3900
     acaaacggtt ttggaatgct gaagacatag tatcctgatg gaatcgttaa gtatcctgat      3960
     tatggaccga gttgggg                                                     3977
//
ID   Copia-1_AnFu-LTR repbase;    DNA;    INV; 180 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-180
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2884-2884 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 180 BP; 51 A; 34 C; 30 G; 65 T; 0 other;
     tgttgggatt tatacgttcc atatttactg gcatttctgg caacactgcc gtttttggac        60
     tttgacgttt taaatacatg catttagtta gtcgcgccag aaacctcgat taataaacat       120
     cttttaagat ataccgcagt aattaccgtg tgtcgacaag tttttcataa atattcaaca       180
//
ID   Copia-1_AnSt-I repbase;    DNA;    INV; 3981 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3981
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 785-785 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..3941
FT                 /product="Copia-1_AnSt-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MMGQDGINFDKLDGRSNFSTWEKKMAAFLRTRDLYKC
FT                 VLPAPQTETDEDKLSRAAGWIFLACEDHITHHFGKDDSPLQIWEALRKTFA
FT                 ETGQGLHLQAVMTLSHTYRADCVSNDEYVGRMMEAWRRCTEVGIKFEDNIV
FT                 ALFMIGNLGPQYEAFRQSLIGSGQTITVDRVKAGLLELTPLQSQVPDTAYY
FT                 SGPRPHKEQSQKYKSHIKCHKCGKMGHYKNKCRSVSDRSGGSSGISGSVSG
FT                 ADANKTAEAKYASALSASFAEMSGGWYLDSGASCHMTSRRDILSDFRASEK
FT                 QTITVADDRKLKVEGCGSAVVTIGGKQLLLRNVLFVPQLKANLISLDVASR
FT                 MGHRIIIENGVLKVIKNSCGSVLIETPSSGGVFKIEAKHVKCLLVKDDGVI
FT                 EWHRKMGHMSYQGLNNLKKVCSDVQFEGTQEDIRGCISCAEGKQTRAPFRK
FT                 KDAIIKTTRILDLVHTDVCGPMSTSLGGSRYFVVFIDDFSRKVFVYFLKEK
FT                 SAVVETFRRFKAEVENQTGVHIKRLRSDNGTEFVNKEMLEICQASGIIHEK
FT                 APPYTPELNGVSERMNRTLIERARCMISDGNLDRALWAEAVQHAAFIVNRS
FT                 VNRSLGNRCPEEIWTGEKPDLASLKIFGNPAMVLLPKVMRRKWDPKAVEMQ
FT                 FVGYSDKVFRFYWPKTKRVYTSRDATFLPQTPMKTGSLFKVDEDDDVESGT
FT                 TSVGACSRRKTGTKTDSVIKTETVNQLDSSCDEEYEDAEGADNHDCGENRI
FT                 EDQPILRRSQRTARPIVREDFVSYFARDCSPEDPKDREDALKTHDARFWER
FT                 AMQEELSSFESNQSWTLVDLPPGRKAIRTKWVFKRKRAEDGSVLRHKARLV
FT                 AKGCSQKYGVDYAETFSPVVRYGSLRLLIAMAAQKGMNIDQMDAVTAYLQG
FT                 RLKEEIYVMQPEGFEDGTGRVCKLNKAMYGLKQSGRCWNKCLDEALLSFDL
FT                 RRSAEDPCVYYNTDSSLVVAIYVDDILIFWSDVKVRDELKAKLSETFLMKD
FT                 LGRARTCVGMTITYGDDMISIDQTKYATEIVHRFGMQDCKPVSSPCDVSHK
FT                 LAAASGDTNDNVPYREAVGALLYLVQGTRPDLAFAVSNVSRYNDRHDSTHW
FT                 IAVKRILRYLKGTVDYKISYRRGSGEYISGYVDADWASERDDCRSYSGYVF
FT                 KLAEGAVSWSCKRQASVAVSSTEAEYIAMTHATKEAIWLLRFMNQFKKQKR
FT                 IELYCDNQSAMVMASREAYSSRAKHIDVSYHFIREHVCSGLLHLQYVPSAN
FT                 NIADGLTKGVNGIKMKFCVEGFGMYAS"
XX
SQ   Sequence 3981 BP; 1173 A; 751 C; 1074 G; 983 T; 0 other;
     ggttatgggc ccagtatttg cccagcagag tgaagaacga aaagtaaagt tttgctggaa        60
     tagaaaggac agttcccatg atgggccagg acggcattaa tttcgacaag ttggacgggc       120
     ggtctaactt ctcgacatgg gagaagaaaa tggctgcatt tttacgtaca agagatttgt       180
     acaagtgcgt tcttccagca ccacagacgg aaacagacga agataagctg tcgcgagctg       240
     caggatggat cttccttgcg tgtgaagacc atattacgca tcatttcgga aaggatgact       300
     cgccgctgca aatatgggaa gcgcttcgaa aaacttttgc agaaaccggt caagggctac       360
     acctacaggc ggtgatgaca ctttcgcaca catacagggc cgattgtgtt tcgaacgatg       420
     aatatgtggg gcgaatgatg gaagcctgga gacgctgtac cgaagtgggc attaagtttg       480
     aagacaatat tgtggcgttg tttatgatcg gaaatttggg accgcaatac gaagcttttc       540
     ggcagagcct tattggaagt ggccaaacca tcacggtaga tcgagtaaag gcagggcttt       600
     tggaattgac tcctctccaa agccaagttc cagacacagc atactacagt ggaccgcgac       660
     cgcataaaga acaatcacaa aaatacaaat cccacataaa gtgccataaa tgtggaaaaa       720
     tgggacacta taagaacaag tgtcgaagtg ttagtgatag atcgggaggt agcagcggta       780
     ttagtggtag tgtcagtggt gcagacgcga acaaaacagc agaagcaaag tacgcaagcg       840
     cattgtctgc tagtttcgca gaaatgtccg gtggatggta cctggatagc ggagcatctt       900
     gccacatgac gtcgagacgc gacattctca gtgactttcg tgcttcggag aagcaaacaa       960
     tcactgttgc cgacgacagg aagctaaagg tggaaggttg tggatcagcc gtcgtaacga      1020
     ttggtgggaa acaattgctt cttagaaacg ttttgtttgt tcctcaactt aaagctaatt      1080
     tgatttcgct tgatgtggca tcgcgcatgg gccatcggat tattattgaa aatggcgttt      1140
     tgaaagtgat caaaaacagt tgtggatccg tcctgattga gacgccgtcg agtggaggtg      1200
     ttttcaaaat agaagcaaag cacgtgaaat gtttgcttgt taaggacgac ggagtaatcg      1260
     aatggcacag gaagatgggt cacatgagct accaaggttt gaataacctt aagaaagtgt      1320
     gtagtgacgt tcaattcgag ggtacgcagg aagacattcg tggttgcatc agctgtgctg      1380
     aaggaaagca gaccagagcg ccgtttcgca agaaagatgc catcatcaaa acaacgagga      1440
     ttttggacct agtgcacact gacgtttgcg gaccaatgag cacatcatta ggtggatcca      1500
     ggtattttgt tgtttttatt gacgattttt ctcgaaaagt atttgtttac ttcttgaagg      1560
     aaaaatcagc agtggttgag acgttccgca ggtttaaggc ggaagtagaa aaccaaacag      1620
     gcgtacatat aaagcggctt cgatcggaca acggcacaga gttcgtgaac aaagaaatgt      1680
     tggagatttg tcaggcatcc ggaatcatcc acgagaaggc tccgccatac acaccagagc      1740
     tgaacggtgt atctgagcgg atgaatcgga cattaattga acgagcacgt tgcatgatat      1800
     cggatggtaa tcttgatcga gcactttggg ctgaggctgt acaacacgcg gcgttcattg      1860
     taaacagatc ggtgaatcgt tccctaggaa atcggtgtcc ggaagaaatt tggacgggag      1920
     agaaaccaga cctcgcatca ctgaagattt tcggaaatcc ggcaatggtt cttttgccca      1980
     aagtaatgcg tagaaaatgg gacccgaaag cagtggaaat gcagttcgta ggttattccg      2040
     ataaagtatt tcgattctat tggccgaaga ccaaacgagt atacaccagt agggatgcaa      2100
     cgtttctgcc tcaaacacct atgaagactg gttctttgtt taaagtagat gaggacgatg      2160
     atgttgaaag tggaacaact tcagttgggg catgtagtcg tagaaaaact ggaacaaaga      2220
     cagattccgt aatcaagacc gaaacagtaa atcagcttga ttcttcttgt gatgaggaat      2280
     atgaagatgc cgaaggcgct gataatcacg attgcggtga aaataggatt gaagatcaac      2340
     ctatcttaag acgatcgcag cggacagctc gtcctatcgt acgcgaagat ttcgtctcct      2400
     atttcgctag agattgtagc ccagaggatc caaaagatcg tgaagatgca ttgaagacgc      2460
     atgatgctcg attctgggaa agggcaatgc aagaagagtt gtcttcattt gaaagcaatc      2520
     agagctggac attagtggat cttccaccgg gtcgtaaagc cataagaacg aaatgggtgt      2580
     ttaagagaaa gcgcgcagaa gacggtagcg ttttgcgaca taaagcgcgc ctggtcgcca      2640
     agggatgtag tcaaaagtac ggcgttgatt atgctgaaac cttttcacca gttgtgcgtt      2700
     atggctcgct acggttattg atcgctatgg ctgcccaaaa gggtatgaat attgaccaga      2760
     tggacgcagt taccgcgtac cttcaaggaa ggttgaagga ggaaatctac gtaatgcagc      2820
     cggaagggtt cgaagatggc acgggcagag tttgcaagct gaacaaggca atgtatggcc      2880
     ttaaacaaag cggacgttgc tggaacaaat gcctagatga agcattatta tcattcgacc      2940
     taagaagatc tgccgaagac ccttgcgtct attacaatac cgacagtagt ttggtagttg      3000
     ctatatatgt cgatgatata ctgatatttt ggtctgacgt aaaagtacgt gatgagctca      3060
     aggctaaact gtcggaaact ttcttaatga aagatttggg tcgagctcgt acatgtgtag      3120
     gtatgacaat aacctatggt gacgatatga tcagcatcga tcagaccaaa tacgcaacag      3180
     agatagtcca tcgctttggc atgcaagatt gtaagccagt gtcttcgccg tgtgatgttt      3240
     cacacaagtt agccgcagca tctggagata ctaatgataa cgtgccgtat cgtgaagctg      3300
     ttggagcttt actttacctg gtacagggta ccagaccgga tttggccttt gcagtcagta      3360
     atgttagccg ctacaacgat cgccatgata gtacacattg gattgcggtg aagagaattt      3420
     tgagatatct caaagggacc gttgattata agatcagtta tcgtcgtgga tcgggtgaat      3480
     acatcagcgg ctacgtcgac gcagattggg ccagcgaacg agacgattgc agatcgtatt      3540
     ctggttacgt cttcaagtta gcagagggag ctgtgtcgtg gtcgtgtaaa cggcaggcat      3600
     cggtcgcggt ttccagcact gaagcggagt acatcgcaat gactcatgca accaaggagg      3660
     cgatttggtt gcttcgcttt atgaaccaat tcaaaaagca gaagaggatt gagttgtact      3720
     gtgacaatca gagtgcgatg gtaatggcta gtagagaagc gtatagttcc cgtgctaagc      3780
     acattgatgt aagctatcat ttcattcgtg agcatgtatg tagcggttta ttacatcttc      3840
     aatacgttcc atcagcaaat aatatcgcag acgggttaac gaagggtgtg aacggaatta      3900
     aaatgaagtt ttgtgtagaa ggattcggga tgtacgcttc ctagtggata agggacagaa      3960
     atggtatgat ccgagttggg g                                                3981
//
ID   Copia-1_AnSt-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-215
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 774-774 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 215 BP; 55 A; 44 C; 44 G; 72 T; 0 other;
     tgttggattt catacgaatt cataccatct cttttagggt tttctggcag cactgccatt        60
     acattgcgtt tgacgtttcg aatgtcattt tgcggtatgt gttagttctg tcgcgccaaa       120
     actctccata ggaaaggtac aataaaaggc agttccgatt gtacgcataa accagcagag       180
     tgtttttcgt cagagctttt tccgaaatta caaca                                  215
//
ID   Copia-1_BM-I repbase;    DNA;    INV; 4037 BP.
XX
AC   nscaf2830;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_BM_;
KW   Copia-1_BM-LTR; Copia-1_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4037
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 583-583 (2010).
XX
DR   Genome; nscaf2830; Positions  424200  428236.
XX
CC   Positions [1464-1964] - Integrase core
CC   'GTAAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..4037
FT                 /product="Copia-1_BM-I_1p"
FT                 /translation="MGPNMFNLEKLVGRENFATWKFSMKAYLEHEDLWCCV
FT                 ECHDGKPVDAVKDIKAKSKLILLLDPQNYVHVQDCKTVKQVWENLQKAFDD
FT                 NGLTRRVGLLKDLINTTLDSSNRVEDYVSKIMNTAHKLRNISFDVNDEWLG
FT                 TLMLAGLPEEYKPMIMGLESSGIKISADSVKSKLIQEVNTSKSAAFYTNSR
FT                 KPRNNTSSIKTKGPRCFNCNRNGHFAKYCKLPKKQTPNKGESPSFVAAFSA
FT                 TVSKNVSNEWYIDSGASMHMTSRIDWMYNVTESSVKNITVANREPLAVNGV
FT                 GCVNIQLSQENKIQVKNVLFVPGLATNLLSVGAIVKNGYKVTFNDKGCEVG
FT                 NSKGEVICSAKLKNSLYVLETCKEVAHLVSRNKNSNNTYLWHLRMGHLNMS
FT                 DVKKLPTCSEGVTLIPDVNDVTCTHCMEGKQARLPFKNTGTRATRPLELIH
FT                 SDLCGPMENISFGGMKYFITFTDDFTRMVHVYFLKDKLKILEIFKDFKLKV
FT                 ENELNYKIKRLRTDNGKEYCNYNFEKYLSNHGIIHQTSTPYTPQQNGLAER
FT                 MNRTLVERARCMLFYANLEKKFWTEAVATAAYVVNRSPTKSLEGKTPYELW
FT                 KGKKPNLSHLKIFGSEAMVHVPKEKRHKWDKKSVKMIFMGYCDSSKGYRLM
FT                 DPKTLKIIKSRDVIFIENVETSIPIEDNRTVTVSSVPSETEDSENSSVSRE
FT                 QEIHTQESSATAPLMSSKDSNIRKGDSEDSSEYDTDTGELDATYHPPYPIR
FT                 QDYSSSITLRQRNKQCDTQDGKTSLLCLYSDLTDPQTVEEVLTSSQAAEWK
FT                 RAMDEEYSSLMKNKTWSLTELPPGKKALPCKWVFKIKTDQNGNVTRYKARL
FT                 VIKGYAQRKGTDYEETYSPVVRYTTIRYLFALTAKYGLDIDQMDAVSAFLQ
FT                 GEIDTEIYMVQPEQYKQGSKVCKLHKSIYGLKQASRLWNLKLNCVLHELGM
FT                 QQSRTDPCIYYNVEKNTFIAIWVDDLILLTSQKKTKNLLKEKLKEHFEMKD
FT                 IGSTSYCLGLQITRDGGKVMIDQEKYIKEMLARFKMSDCKPVRSPFEVGMK
FT                 FNEKKEEDELIDCPYQQAIGSLLYLAQGTRPDISFAVNTMSRFNKDYTAAH
FT                 WTAVKRIFRYLQGTKDFKLVYTKDGNENITGYCDADWASDVRDRKSSTGYV
FT                 FMLQDGAISWRSQKQQTVALSTAEAEYMSMSSAAQEALWLQQLHTELGQQK
FT                 NNPLIIFCDNQSAIKLSNNYCYLPRSKHIDIRYHFLKDHVSNLDIKYCYIK
FT                 GEEMVADNLTKGTSVDKHLYCLTKMGLHSKGG"
XX
SQ   Sequence 4037 BP; 1422 A; 646 C; 850 G; 1119 T; 0 other;
     tggtagcaga gcgtggttca gttgtgttta gttgtggtat agctggaaat aataataaag        60
     tggacaaaac ttcaatccga aaaaattgtc gttgcaattc aaattgaagg gtaggatcgt       120
     tcatcaaaaa ttgaatattc ctcgtgaaga taagcaagat gggcccaaat atgtttaatt       180
     tagaaaaact ggtaggaaga gaaaactttg ccacgtggaa attcagcatg aaagcatatt       240
     tggaacatga agacttgtgg tgttgtgtcg aatgccacga cggcaagccg gtggatgctg       300
     taaaggatat caaagcgaaa tcaaagctga tcttactact ggatccgcaa aattatgtcc       360
     atgttcaaga ctgtaaaacc gtcaaacaag tgtgggaaaa tttgcaaaag gcatttgatg       420
     ataatggttt aacaagaagg gtaggtttgc ttaaagattt gatcaacacc acattagatt       480
     caagtaacag agttgaagat tacgtaagta aaataatgaa cacagcacac aagttacgta       540
     atattagttt tgatgtcaat gatgagtggc ttggcacctt gatgttggct ggcttaccag       600
     aagaatacaa acccatgatt atgggcttag agagctctgg cattaaaata agtgctgatt       660
     cagtaaaatc taaacttata caagaagtta atacatcaaa atcagcagcc ttctatacaa       720
     attccagaaa acccagaaat aatacctcat cgataaaaac aaagggtccg agatgcttta       780
     actgcaatag gaatggacat ttcgctaaat attgtaaact accaaagaaa caaacgccaa       840
     ataaaggaga aagtcctagt tttgtggcag ctttttcagc tacagtcagc aaaaatgtaa       900
     gtaatgaatg gtacattgac tctggtgcat ccatgcatat gacaagcaga attgattgga       960
     tgtataatgt aactgaatca tctgtaaaaa acatcactgt ggctaacaga gaacccttag      1020
     ctgtgaatgg agttggctgt gtgaacattc agctaagtca agaaaataaa atacaagtta      1080
     aaaatgtttt atttgtacct gggctggcta ctaatcttct ctcagttgga gctattgtga      1140
     aaaatggata taaggtcaca tttaatgaca aaggatgtga agttggaaat agtaaaggtg      1200
     aagtaatatg ctctgcaaag ctgaagaata gtttgtatgt attagagacc tgtaaggaag      1260
     tggcccactt ggtctcaaga aataagaata gcaataatac ttacctgtgg cacctgcgga      1320
     tgggtcattt gaatatgtct gatgtaaaga agctacctac atgctctgag ggagtgactc      1380
     ttattccaga tgtaaatgat gtcacttgca cacattgtat ggaaggtaag caagctaggt      1440
     taccttttaa aaatactgga acaagagcta cgagacctct agaattaatc cattctgact      1500
     tgtgtggtcc tatggagaac atttcatttg gaggtatgaa atacttcatt actttcactg      1560
     atgatttcac acgaatggtt catgtctatt ttcttaaaga caagttgaaa atattagaga      1620
     tttttaagga ttttaaactg aaagtagaga atgaattaaa ttataaaatt aaaaggcttc      1680
     gcacagataa tggcaaagaa tactgcaact ataattttga aaaataccta tctaatcatg      1740
     gtataattca tcagacctct actccgtata ctccacagca gaacggcctg gccgagagaa      1800
     tgaacaggac tttagttgaa cgcgcaagat gcatgttatt ttatgctaac ttagaaaaga      1860
     aattctggac tgaagcagta gcaactgctg cttatgttgt gaatcgttcc ccgacaaagt      1920
     cattagaagg taaaactcca tatgaattgt ggaaaggtaa gaaacctaac ttatcacatc      1980
     taaaaatatt tggctctgaa gctatggtcc atgtgccaaa ggaaaaacgc cacaaatggg      2040
     ataaaaaatc agtaaaaatg atatttatgg gttattgcga cagttccaaa ggatatcgtt      2100
     taatggaccc taaaacactt aaaataatca aaagcagaga tgttattttt attgaaaatg      2160
     tggaaacttc tattccaatt gaggataatc gcacagtcac tgtcagttct gttccttcag      2220
     aaactgagga ctcagagaat tccagtgtca gccgggaaca agagatacac actcaggagt      2280
     catctgcaac tgcaccttta atgtctagta aagactcaaa tatacgaaaa ggtgatagtg      2340
     aagactcaag tgagtatgac actgacactg gggaactaga tgccacttat cacccgcctt      2400
     atccgataag acaagactat agtagtagta taacattaag gcaacgaaat aaacaatgtg      2460
     atacacagga tggcaaaacg agcctattgt gtttgtattc agatttgact gatccacaaa      2520
     cagttgagga ggtactgaca tcttcacaag ctgcagaatg gaagagagcc atggatgaag      2580
     aatatagttc ccttatgaaa aataaaactt ggtcattgac agaacttcct ccaggtaaaa      2640
     aggctctccc atgcaagtgg gtattcaaaa ttaaaacaga ccaaaatgga aatgtcaccc      2700
     gttacaaggc aagacttgta ataaaaggct atgctcaaag aaagggcacc gattatgagg      2760
     aaacatactc tccagttgtc aggtacacaa ctattcgcta cttatttgct ttaacggcta      2820
     aatatggatt ggatatagat caaatggatg ctgtatcggc ctttctacag ggagaaattg      2880
     atactgagat ctatatggtg cagccagaac agtataagca agggtctaag gtatgtaagt      2940
     tacataaatc tatttatggt cttaaacagg ccagtagact gtggaacctg aaattaaatt      3000
     gtgtactaca tgagttaggt atgcaacaat caagaacaga tccttgtatc tattataatg      3060
     tagagaaaaa cacgtttata gctatctggg tcgatgattt aattttgttg acttctcaaa      3120
     agaaaacaaa aaatttgttg aaagaaaagt taaaggaaca ctttgaaatg aaggatattg      3180
     gttcgacaag ctattgctta ggtttacaga ttaccagaga tggaggtaaa gtaatgatag      3240
     atcaagaaaa atatataaaa gagatgttag caaggttcaa aatgtctgac tgtaaacctg      3300
     taagatcacc ttttgaagtt ggtatgaaat tcaatgagaa gaaggaagag gatgaattga      3360
     ttgactgtcc atatcaacag gcaattggct ctttgttgta tttggctcaa ggtacccggc      3420
     cggatatatc atttgcagta aatacaatga gcagattcaa caaggattat actgctgcac      3480
     attggacagc tgtgaaaaga atttttagat acttgcaggg tacaaaagat ttcaaattag      3540
     tttataccaa agatggtaat gagaacatca caggatattg tgatgccgac tgggcgagcg      3600
     atgtacgtga tcgtaagtcg tccactggtt acgtatttat gttacaggat ggtgctatat      3660
     cttggcgctc tcaaaagcaa cagactgtcg ctctctccac tgctgaagcc gagtatatgt      3720
     cgatgtcgtc agcggcgcag gaagcgttgt ggcttcaaca attacatacc gagctcggtc      3780
     aacagaagaa caaccctctc atcatctttt gtgataatca gagtgctata aaattatcaa      3840
     ataattattg ttatttaccc agatcaaaac atattgatat tcgttatcat tttctcaaag      3900
     accatgtcag taacttagat ataaagtatt gttatataaa gggtgaggaa atggtagctg      3960
     ataatttaac taagggtact agtgttgata aacatttgta ttgtttaacg aaaatggggt      4020
     tgcattccaa gggaggg                                                     4037
//
ID   Copia-1_BM-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   nscaf2830;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_BM_;
KW   Copia-1_BM-I; Copia-1_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-186
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 584-584 (2010).
XX
DR   Genome; nscaf2830; Positions  424014  424199.
XX
SQ   Sequence 186 BP; 48 A; 38 C; 30 G; 70 T; 0 other;
     tgttagagaa atggaatgca gccattttag tttccctttg tcttacgcct ggggcgctgt        60
     actctgtact acttgtcaag ctgacattct gtgtactatt atattttttc taccaataaa       120
     tgcgagttat attgtgatcc taaaaacgta tcattatttc ttcaacaacc acgtagtttt       180
     cctaca                                                                  186
//
ID   Copia-1_BrCo-I repbase;    DNA;    INV; 4175 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-4175
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1400-1400 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..4003
FT                 /product="Copia-1_BrCo-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MSKKSDFEVKKLQGSDNYHYWRFQMQNYLALKKLQKC
FT                 IKPKPNLPNVSSENDPEKLVEAQSILSLSVADSLICHIQNAKSALEIWNIF
FT                 QSLYQDSGLLRRTGLLRALMSVRLESYNSMQAYVEEIMDISNRLNSIGFEI
FT                 GDEWIASILLAGLSDEYKPFIMSIEGSGAKITADTIKHKLLDSEVNTMGVN
FT                 SSESNALYASKRQWKPKVGRKEEFICFACGEKNHKASDCMKERQSDKRSFN
FT                 VSQLKNNESSASSAQSSKQGTTAKVVRSSAFTMKKKDRRRQNDWYIDSGSG
FT                 RNMTPFADIVVDKVKSDINKVATADNSNLDVTSMGKVHINVSSNNIEVNDC
FT                 LHVPDLSVNLLSVSQIVSRGNKVVFDKNGCSIFNKDGDIVAHCEETDGVYK
FT                 LRASTVTKGMFTNASNNLVKWHRRLGHLNYRSMCNMRDGAVHGMSFKSDAN
FT                 ILRSCEICAMGKQSRQPFKENKCGRKTNELLDMIHSDLCGDMEQISIGGAR
FT                 YFLTFIDDFSRKTFIYFIKSKSEVPAKFIEFKSWAENQFGQKIKVFRTDNG
FT                 LEFCNQKIQKVCVANGIQHQRTVVYTPQQNGVAERMNRTIVERARCLMFDA
FT                 ELDKSYWAEAANMAVFLINRSVCSILVNQTPEEVWSGKKVDLSDLKLFGSP
FT                 VMVHVPKQKRKKWDSKSHKLIFVGLDSNSKGYRCIDPATKKLVISRDVIFM
FT                 AKVRDSITQSTEEFISVRVNRDSEGELSEEELDSDQSVVTIRNLSNDQSHI
FT                 TSDEEDQSFDDELRDPDYEPNDSELNDTTMYVRQEQFDRNICSLTCQPPGV
FT                 EPITLCDAISSNDSDKWRSAMNEEINSLNDNNTWKLVDLPPDRKPVKTKWV
FT                 FKLKKDESGNVVRHKARLVAKGCSQRYGVDYLETYSPVVRYTSLRFLVALA
FT                 VKNGLRIDQMDAVTAFMQGDLTEEIYLEQPEGFNDGSSRVCRLNKAINGLK
FT                 QSGRVWNIKLVNALKSFGLKQSKMDPCVFYTEALDLLLAIWVDDNFIFWKD
FT                 ESILKQLKDSLCSTFKMKDLGRATNCVGIRITYNQNSICLDQSTYIAEVLK
FT                 RFGMADSKPVSTPSDVNQKLSMNATSNNEEDENITGKVPYQELVGCLLFIA
FT                 QGTRPDIAFAVNDVSRFNQNHRAIHWKAVKRILRYLQGTIGCKLRYSKNGN
FT                 QDLVGYTDSDWASDIDKRRSCSGNFFKLSGGAVSWYSKRQQTVALSTTEAE
FT                 YMALASSVQESIWLKQFGYELDKSFGGPVTLFCDNQSAIDLANSDGYRQRT
FT                 KHIDIRHHYLREKVADRTVVIKYISTDNMAADNLTKAVSKEKHNFCSEEMG
FT                 LWF"
XX
SQ   Sequence 4175 BP; 1377 A; 713 C; 962 G; 1123 T; 0 other;
     ggttatgggt agaccagcaa attaatttat cgaaaagtta atttggaatt cagtaaagat        60
     gtcaaagaaa tcggatttcg aggtgaagaa gttgcaaggg tcggacaatt accattattg       120
     gagattccaa atgcaaaatt atttggcgct aaaaaaactg caaaagtgca taaagccgaa       180
     accaaattta ccaaatgtat ccagcgaaaa tgatcccgaa aagttagtgg aggctcaatc       240
     aattctgtca ttaagtgttg ctgattcact aatttgccat atacagaatg caaaaagtgc       300
     actagagatt tggaacattt tccagagcct gtatcaagat agcggtctat tgagaagaac       360
     cggtttgcta cgcgcgctta tgtcggttcg cttggagtca tacaattcta tgcaagcata       420
     tgtggaagaa attatggata tatcaaaccg actcaacagc attggatttg aaattggcga       480
     tgagtggatt gcatctatat tgctagctgg attatcagac gaatataagc catttatcat       540
     gagcatcgag ggatctggtg cgaaaattac agccgacact atcaaacata aattgctcga       600
     ttcggaagtt aatacaatgg gtgttaatag ttctgaaagc aacgcattat acgcatcaaa       660
     aaggcaatgg aaaccgaagg tcggcagaaa agaagagttc atatgttttg catgtggaga       720
     aaaaaatcac aaagcaagtg attgtatgaa agagagacag agtgataaaa ggtcgttcaa       780
     tgtatcacaa ttgaaaaaca atgagtcatc agcgtcatcg gctcaatcat cgaagcaagg       840
     gacaacagca aaagttgttc ggtcatcggc atttacaatg aagaagaaag atcgaaggag       900
     acagaatgat tggtatatag atagcggcag tggtcgtaac atgacaccat tcgccgatat       960
     tgtcgtggat aaagtgaaaa gtgatatcaa caaagtggca acagctgaca actcgaattt      1020
     ggatgttaca agcatgggaa aagtccatat aaacgtttca agcaacaaca ttgaagtgaa      1080
     tgactgccta catgttccgg atttatcagt taatcttttg tcagtgtcgc aaatagttag      1140
     ccgtggaaac aaagttgtgt tcgataaaaa cggttgttca atcttcaata aggatggcga      1200
     tatcgttgcg cattgtgaag aaaccgatgg tgtgtacaaa cttcgtgcgt caacggtaac      1260
     aaaaggaatg tttacaaatg caagcaacaa tttggtgaag tggcatcgac gattaggtca      1320
     tttgaattac cggagtatgt gcaacatgag agatggtgca gtgcatggaa tgtcgttcaa      1380
     gagtgatgca aacattttga gatcctgtga gatatgcgcc atgggtaaac aaagtcggca      1440
     acctttcaaa gaaaacaagt gtggaagaaa aacgaatgaa ttgttggaca tgattcattc      1500
     agatttgtgt ggagatatgg aacagatttc cattggagga gccagatact ttctaacatt      1560
     catcgatgat ttctcccgta agacattcat ttacttcatt aaatcaaaga gtgaagtgcc      1620
     agcaaaattc attgagttta agtcgtgggc ggagaatcaa tttggccaaa aaattaaagt      1680
     ttttcgtacg gataacggtc tcgaattctg caaccagaag atacagaaag tgtgtgtggc      1740
     aaatggaatc caacatcaaa gaaccgtcgt ctacacaccg caacaaaatg gtgtagcgga      1800
     aagaatgaat cgaacgatcg tagaacgtgc ccgatgttta atgtttgacg cagaattgga      1860
     taagtcatac tgggccgaag cagcgaatat ggcagtgttc ctcatcaatc gatcagtgtg      1920
     ctcaattttg gtcaatcaaa ctcccgagga ggtctggagt ggcaagaaag tggacctgag      1980
     tgacctgaaa ctgtttggtt cgcccgttat ggtacacgtt ccgaaacaaa aacgaaagaa      2040
     atgggacagc aagtcacaca agctaatttt cgttggtttg gatagcaatt caaaaggcta      2100
     tcgatgcatt gatccagcca caaagaagct cgtaatcagc cgtgacgtta tatttatggc      2160
     gaaggtaaga gattcaatca cacagtcaac tgaggaattt atttcagtga gggtcaatcg      2220
     cgacagtgag ggcgaattgt ctgaagaaga attggattct gatcaatcag ttgttaccat      2280
     tagaaattta tcgaacgatc aaagccacat tacatcggat gaggaggatc aatcgtttga      2340
     cgatgaattg cgagacccgg actatgagcc aaacgacagt gaactaaacg atacgacgat      2400
     gtatgtgcgt caagaacaat tcgaccgtaa catttgttcg ttgacatgtc aaccacctgg      2460
     tgtagagcct atcacacttt gtgatgcaat ttcgagcaac gattcggata agtggcggtc      2520
     cgccatgaat gaagaaataa attcattgaa cgataacaac acctggaaat tggtagacct      2580
     tccgccagat cgaaaaccgg taaagacaaa atgggttttc aaactcaaaa aagatgaatc      2640
     tggtaatgtc gttcgtcaca aggcacgatt agttgcaaaa ggatgttcgc aacgctacgg      2700
     cgttgattat ctggaaacat attcacctgt tgtccgttac acgtcgctac gatttcttgt      2760
     tgcgttggca gtgaagaatg ggttacgcat agaccaaatg gatgcagtaa ctgcgtttat      2820
     gcaaggcgat ttaacggaag aaatttattt ggaacaaccg gagggtttca acgacggttc      2880
     aagccgagta tgcagattga ataaagcgat aaatggtcta aaacaatctg gaagagtttg      2940
     gaacattaag ctcgtcaacg cgctaaaatc atttgggctg aagcagtcga aaatggatcc      3000
     ttgtgttttt tacacagaag cgctcgattt gttgctggca atttgggttg acgataattt      3060
     cattttttgg aaggacgaat cgattttgaa acagttgaaa gattctttat gttcaacgtt      3120
     caaaatgaaa gatttgggtc gagcgacaaa ttgtgtggga atccgaataa catacaatca      3180
     aaacagcatt tgtttggacc agtcaacata catcgctgaa gttctgaaac gatttggtat      3240
     ggcggatagc aagcctgtgt caacaccgag cgatgtgaat caaaaattat cgatgaatgc      3300
     aacatccaac aatgaggagg atgagaatat tactggaaag gtaccatatc aggagcttgt      3360
     cggatgttta ttgtttattg cccaaggcac gagaccggat atagcattcg ctgtcaacga      3420
     tgttagtcgt ttcaatcaaa atcatcgtgc catacattgg aaagcggtca aacgaatttt      3480
     gcgctacctc caaggaacaa ttggatgtaa gcttcgatat tctaaaaatg gaaatcaaga      3540
     tttagttggt tacaccgatt cggactgggc atcagacatt gataagagac gttcgtgcag      3600
     cggaaatttt ttcaaacttt ccggtggtgc tgtttcatgg tacagtaaac gtcagcaaac      3660
     agtagcactg tcaacgaccg aagcggaata tatggcattg gcgtcgagtg ttcaagaatc      3720
     gatttggttg aaacaatttg gctacgagtt ggacaaaagt tttggtgggc cagtcacatt      3780
     gttttgcgac aaccaaagtg caatcgattt agcaaattct gatggatacc gacaacgcac      3840
     aaaacatatc gatattcgtc atcattattt gcgtgaaaaa gttgctgatc gtacagtggt      3900
     catcaagtac atttcgactg ataatatggc tgcagataat ctcaccaaag cggttagtaa      3960
     agaaaaacat aatttttgct cagaggaaat ggggttgtgg ttttaagatt tgctaactga      4020
     tttccagtct aatttcgttt acatttaatt tttttaattc agtttagtaa tttgctgata      4080
     aatttatttt tctaattctt ttgcctaaat tttgaattac gctttgaact aaaattgcta      4140
     tctgaaatct aattaacaat cataaaaagt gaggg                                 4175
//
ID   Copia-1_BrCo-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-157
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1387-1387 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 157 BP; 51 A; 31 C; 24 G; 51 T; 0 other;
     tgttgagagc aacccgacta cttatattca ccgcctaatg taacacgtag atacattgta        60
     attaggatga gaactctttg aataaagttt agttctgatt gtaaactcaa tacgaaaagt       120
     cgcatttatt atttccatcg ctaatactct gccatca                                157
//
ID   Copia-1_BTa-I repbase;    DNA;    INV; 4576 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4576
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 597-597 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..4574
FT                 /product="Copia-1_BTa-I_1p"
FT                 /translation="MSESHEYQLLDMRAVDKLKGKSNYELWKFQVQILLEE
FT                 KGALKIATGEDPKPAATDRPDDTKSQEAWTKKDVIGKRIIFTTLEKTIMPS
FT                 IMSCNSSAEMWVRLKNLYGRNQEEQKQELIREFFSIKFERGTPMTQHVSKI
FT                 QNIFAQLKAVDQTVSDEMLMSKILTTLPESMESFVTSWDVLSINEKTVERL
FT                 VSKLLLAEERLKTSSESGVAFSTSSSLSCYRCHQVGHLKRNCTTVLKCENC
FT                 GKGHLTQYCRNKKGENSTSTCSICNKGNHSTEKCWHNKANQKGNAKKNKQN
FT                 SKGEKGVAFSLNKIKTDGVESDEWIVDSGATSHLTNNLTDLSDVKNANIEI
FT                 GVAKKGNSLNITKIGQVCADECSLTKVLFSDEAAGNLLSVKAITEKGGTVL
FT                 FTENEVLISKDNVEVLKGEKGDNGLYTIKLHPKIIDKALSANVVNDAWMWH
FT                 KRLGHIGAQNMCKLLKLSEGMNLQKQQVIETIKNCEVCILAKQTRLPFEND
FT                 RHKASRPLEIIHSDVCYVSPPTWDNKQYFVTFEDDFSGFVQIYLLGAKSEV
FT                 SECAKEYVAEVEAKFNLKISKLRSDNGGEYESTEFKKWCKNRGIILDRSTP
FT                 YTPQLNGTAERLNRTILDKARAMILESKLDKEMWGEAVLAATYVLNRSPKA
FT                 NKETTPFELWFNRKPNLKNLRIFGSTAYAKILTRSGKFEERSEKLIFVGYC
FT                 QNGYRLWDKEKREIVLRRDVKFIETNSHAAEDDYSSIISEQDEKDDAISNE
FT                 NSERESEHTGRGKSPSVQESDFDGNQSESELDDKDSESSEWLPESDDDDED
FT                 PSAPENPSGDRRYPDRPRQPPVRYPEQASLADRVIPGCSGSPDPQTYNEAL
FT                 ASPEQHKWQAAINAETAALKDNKTWVLVNKNEAKTSKILSSKWVFRTKEDG
FT                 TKKARLVVRGFEQGDIDYGEIFSPVASISSIRTLLVLAVERDMNIAKFDIK
FT                 SAFINAELQESVFMYIPQGFEKFEGKICKLNKALYGLKQSPQAWNTTLTQH
FT                 LVKQGFKQLKTDSCIFKNKTNTVFISIHVDDGLVVFKCKTELDKLINLLGK
FT                 DFDIKTEVNPTDYLGIEIKRGVSYIKISQSKYTDNVLKTFNMYDAKSVETP
FT                 MIPENVSGNIFETGENQIEVINFPYRKAVGSLLYLSNKTRPDIAFATNVVS
FT                 RHLDNPDKSDVIKVKRILRYLKGTMSDGIIFEKSGTLNLNAYSDADYGGDL
FT                 DTRRSTTGYVIFIGNSPVCWSSRRQHLVATSSAESELMAAFDCVKTLAYMR
FT                 NLMLELIDEYKENILYVNHNRLFIDNQSTIKLIKNGVNGKRSKHMDIRFHF
FT                 IKEKVERNKVEIKYISTDRQIADILTKPLQKIKFNFHKQNLALRG"
XX
SQ   Sequence 4576 BP; 1619 A; 766 C; 1000 G; 1191 T; 0 other;
     ggttatgggc ccagagtgaa cgtgaccatc atgtgaaaaa caatcgtgcc gaaaaatcac        60
     gagaacgacg aaaattttag tcaaaaatta cgggcgacat agtgccaacg ggcgacaaag       120
     tgccaacggg caacaaagag ccaatttcgg gcaacatagt gccaactaat tcgacgaaaa       180
     atttaacgtt cgtttttgtg ataaaaattt cgggcaacaa agttttcggc caacgaaatt       240
     tttcggtcaa cacagtgaca actaaattga aattttttcg gtcaacacag tgacaactaa       300
     attgaaattt tttggtcaac acagtgacaa ctaaattgaa cttttcggtc aacacagtga       360
     caactaaatt gaacttttcg gtcaacacag tgacaactaa atcgaagttt acgtgaaact       420
     aaatttcctg aagaaatact gtattttctg ggcaaaatcg gtgccaatca atttatcggt       480
     gcgcatcaat acgcaaaaca aaaatgtctg aatcgcacga gtatcagtta ttagacatgc       540
     gggccgtgga taaactcaaa ggaaaatcaa actatgaact ttggaagttt caagtgcaaa       600
     tccttctgga agaaaagggc gcgctgaaaa tcgcaactgg agaggaccct aaacctgcag       660
     caactgacag accagatgac acaaagtcac aagaagcctg gacaaagaag gacgtcatcg       720
     gtaaaaggat catctttaca acactcgaga agaccatcat gccatccatc atgtcgtgca       780
     actcctcagc tgaaatgtgg gttcgtttga aaaatttgta tggtaggaac caagaggaac       840
     aaaagcaaga gttaatcaga gaatttttca gcattaaatt tgaaagaggc acgcctatga       900
     ctcaacatgt gagtaaaatt caaaatatct ttgctcaact taaagctgtt gatcaaacag       960
     ttagtgatga gatgctcatg tcaaaaattt taactacact cccggaaagt atggaaagct      1020
     ttgtaacatc atgggatgta ttgtccatta atgagaaaac ggtcgagcga ttagtctcca      1080
     aacttctttt ggcagaggaa agattaaaaa catcgagtga gtctggcgtg gctttttcaa      1140
     ctagttcatc cttaagctgt tatcggtgcc atcaagtcgg gcatttaaaa cgcaattgta      1200
     caacagtgtt aaaatgtgaa aattgtggta aaggtcacct gacccaatac tgcagaaaca      1260
     agaaaggtga aaatagtact agtacttgta gtatttgtaa taagggaaac cattcaactg      1320
     aaaaatgttg gcataacaag gccaatcaaa aaggtaatgc aaagaaaaat aagcaaaact      1380
     ccaagggcga aaaaggggta gcattttctc ttaataaaat aaagaccgat ggtgtggagt      1440
     ctgatgagtg gattgttgat agcggggcca cgagccatct cacgaataat ctaactgact      1500
     tgagtgacgt aaagaatgct aacatcgaaa tcggtgttgc gaagaagggt aatagtctaa      1560
     acataacaaa aattggccaa gtgtgcgccg atgagtgttc gctaacaaaa gttctattct      1620
     cagacgaagc agcagggaat cttttgtcag tgaaggcaat aactgaaaaa ggtggaacag      1680
     ttctttttac agaaaatgaa gtgttaatct ccaaagataa cgttgaagtt cttaaaggag      1740
     aaaaaggaga taacgggtta tatacaataa aattgcatcc taaaatcatc gataaagctc      1800
     tttcagcaaa tgttgtaaat gatgcatgga tgtggcataa gcgattgggg catataggtg      1860
     ctcaaaatat gtgtaaactt ttaaaattga gcgaaggaat gaatttacag aaacagcagg      1920
     taattgaaac tattaaaaat tgtgaagtct gtattctcgc gaagcagacc agattgccat      1980
     ttgaaaatga taggcataag gctagccgac ctcttgaaat aattcacagt gatgtgtgct      2040
     atgtaagccc accaacctgg gacaataaac agtactttgt aacttttgag gatgattttt      2100
     caggttttgt ccaaatttac ttgcttggtg caaaaagtga agtgagcgag tgtgccaagg      2160
     aatatgtggc tgaagttgag gcaaagttca acttgaaaat atctaaactt agaagtgaca      2220
     atggcggaga gtacgaaagt accgaattta aaaagtggtg taaaaataga ggtattatac      2280
     ttgacagaag tactccatac acgcctcagt taaacggtac cgctgaacgc ctgaatagaa      2340
     caattttgga caaggccaga gcaatgattc tagaatcaaa acttgataaa gaaatgtggg      2400
     gcgaggcagt tttggctgca acttatgttc ttaatagaag ccctaaagca aacaaagaaa      2460
     ctactccttt tgagttgtgg tttaacagaa aaccaaattt gaaaaattta agaatttttg      2520
     gctcaactgc atatgcaaaa attttaacca gatcaggtaa atttgaagag agaagtgaaa      2580
     agctaatttt tgttggctat tgtcaaaatg ggtacagact ctgggacaaa gaaaaacgtg      2640
     aaattgtgtt gagaagagat gtgaagttca ttgaaactaa ttcccacgcc gcggaggatg      2700
     attattcatc cattattagt gagcaagacg aaaaggacga cgcaatctcg aacgaaaatt      2760
     ctgagcgtga gtcagagcat acgggaagag gcaaatcgcc aagtgttcag gaatcggatt      2820
     tcgatgggaa ccaaagcgag agcgagttgg atgataaaga cagcgagtcg agtgagtggc      2880
     taccggagtc ggatgatgat gacgaagacc cgagcgctcc agaaaatcca tcaggggacc      2940
     gtcgctatcc tgaccgcccg cgacaaccgc ccgtccgata tccagagcaa gcaagtttgg      3000
     ctgatcgcgt cattcctggg tgctcgggtt cacctgaccc tcaaacctac aatgaggcat      3060
     tagcttctcc agaacagcat aagtggcaag ctgccattaa tgctgaaaca gcagcgttga      3120
     aagataataa aacttgggtt ttagtcaaca agaatgaagc taaaacttca aaaattctct      3180
     caagtaaatg ggtgtttaga accaaagagg atggtactaa aaaggccaga ctcgtagtac      3240
     ggggatttga gcaaggagac attgattacg gggaaatatt cagccctgtt gccagcatta      3300
     gttctattag aacacttttg gtgttagccg ttgagcgtga tatgaacatc gccaaatttg      3360
     atattaaatc agcttttatt aacgcggagc ttcaagaaag tgtttttatg tacattccgc      3420
     aaggctttga aaaatttgaa ggtaaaatat gtaaactgaa taaagcactt tatggactta      3480
     aacaatcacc tcaggcatgg aacacaactt tgactcagca tttggtaaaa caagggttta      3540
     aacagttgaa aactgatagt tgtattttta agaacaaaac aaatactgtg tttatatcta      3600
     ttcatgttga tgacggatta gttgtcttta aatgtaaaac tgagcttgac aagttgataa      3660
     atttgttagg taaagacttt gatatcaaaa cagaggtgaa tccaactgac tatcttggta      3720
     ttgagattaa gagaggggtg agttacatca aaatatctca aagtaaatac actgataacg      3780
     tgttgaaaac ttttaacatg tatgatgcaa aaagtgtcga aactccaatg attcctgaaa      3840
     atgtgtctgg taatattttt gaaactggag aaaatcaaat tgaggtgatc aattttccgt      3900
     ataggaaagc tgtagggtca cttttgtacc taagtaataa aactcgacct gatatagcat      3960
     ttgcgacaaa cgtcgtgagt aggcatcttg acaatccgga taaaagtgat gtaattaagg      4020
     ttaaaaggat tttacggtac cttaaaggta caatgtctga tggaataatt tttgaaaaga      4080
     gtggtacttt aaacttaaac gcgtattctg atgccgatta tggcggggac ttagacacaa      4140
     gaaggagcac cacagggtac gtcattttta ttggaaattc ccctgtgtgc tggtcatctc      4200
     gtaggcaaca tttagttgcc acttccagtg cagaatctga actaatggct gcatttgatt      4260
     gcgtgaaaac acttgcttat atgagaaatc tcatgctaga attaattgat gaatataaag      4320
     aaaatattct gtatgtaaat cataaccgac tattcatcga taatcaaagt actattaaac      4380
     tgatcaaaaa tggggtaaat ggtaagagat caaaacacat ggacataaga tttcatttca      4440
     ttaaagagaa agtcgagaga aacaaagtgg aaatcaaata tatcagcaca gatcgtcaaa      4500
     ttgctgatat tcttacaaaa cctttgcaga agatcaagtt caattttcat aagcaaaatc      4560
     tggcattaag ggggtg                                                      4576
//
ID   Copia-1_BTa-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-268
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 598-598 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 268 BP; 83 A; 52 C; 41 G; 92 T; 0 other;
     tgttgaggtt taatgaaatt aagaatataa cgcaagattt tgcaaacctg tatcagttca        60
     tgtattatat tacttatgac gtatggtcaa ctgagcctga gactcagcga taagatgaag       120
     ctccctgtct agttcaaaat ttctcctgta ctcagtcctc ttcagcactt gtacgcacga       180
     tgtcataaac taagccttat tatcatcgat atatactctg tactatctaa cgaggtgtta       240
     ttttttaata atccataata ccttaaca                                          268
//
ID   Copia-1_Cfl-I repbase;    DNA;    INV; 4232 BP.
XX
AC   AEAB01029077;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_Cfl_;
KW   Copia-1_Cfl-LTR; Copia-1_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-4232
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01029077; Positions   12262    8031.
XX
CC   Positions [1589-2122] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..1605
FT                 /product="Copia-1_Cfl-I_1p"
FT                 /translation="MAENHGIPVFDGEDYGSWKKRITMYLKMKKCDVVITR
FT                 ERIGTDNTEDWEQNNLKAINYIYSAITNKQLEFVSDKESAYEIIKKFDEMY
FT                 LKESTALQIVLRNKLEKLKLKDYSDSATFFSDFEKSINELKAAGAKVEEKE
FT                 KLNYMLRTLPESYSYVGDLIDTLKTEDQTVEYVKSKIKMLELKNRESESAD
FT                 SKSNAFVTESKQNREWRNPADQGCFNCGKFGHYKKDCTESGKGSWREPHRG
FT                 STRGRGQQRGTWRGGGYNKRGSGSTNGRGGHYNSRGRGHHWRREQNGQEAA
FT                 SGGGVFHTVVEVNSLNREVKENNQIHWLLDSGCTDHIINNEKYFSECTTLN
FT                 EPINVKVGDGRILKATKVGKVNILFPIYNRKRKVTLFNVFYVKEMKQNLIS
FT                 YSQVTERNKIVSTGNKSKIYDKFNRLLAIAWKEGRLYKMTSFPCDESEVNV
FT                 TSSYNKAGNISLKEKWHRILGHVNFNYLTTLCKNQLLDGIPNEIDTEYIKC
FT                 RICRKQDAQFTF"
FT   CDS           1589..2944
FT                 /product="Copia-1_Cfl-I_2p"
FT                 /translation="MHNLPFENNRTRAKEILEIVHTDVNGPHKNLGMNGEK
FT                 YFVTFIDDYSKAAKVFVIKSKDEVYKCLLEYINEVENKTGKTIKKLRCDNG
FT                 KEYLNRNIYKLAKEKGIFIDTCPPYVHELNGTAERYNRSIMDIARCLLAEA
FT                 KVNVKFWPEAILAAAYLKNRTLANTIEKKTPYEILFGKKPSAKYLRMYGSR
FT                 VFVRVPEQNRTSKWDRKADLGILLGYNEVGYRVLINNRIVIARHVDIVEND
FT                 IRCIGLDEYENSSDSETGDENLDDCLENFEDCQEINEQELRGKENETESNA
FT                 GQKQKNNQVQEIRKSSRVKKKPVRYDENYVYNNCIYINYCSADSPNNFEEA
FT                 INCDESECWKQAMNKEFNCLSKNKTWKLVDQPKNKKVLDVKWVYTKKSENK
FT                 FKARLVVRGFQQKEVVDDIYSPVAKMQTLKILLSYCCQKGLIIEQMDVETA
FT                 FLNGKVL"
XX
SQ   Sequence 4232 BP; 1714 A; 470 C; 881 G; 1167 T; 0 other;
     tggtagcaga acgtggttga ataaaaagat cactgataat aagatctcga aattgacaaa        60
     aaaaaataaa ataaaataaa aatggcggag aaccatggaa taccagtgtt cgacggggaa       120
     gattatggca gttggaagaa gagaatcacg atgtacttga aaatgaaaaa gtgtgacgtg       180
     gtaattacaa gagaaaggat aggaacagac aatactgagg actgggaaca aaataatttg       240
     aaagccataa attacatcta cagtgcaatt acaaataagc agttggaatt tgtaagtgat       300
     aaagaatcag cgtacgagat aataaagaag ttcgacgaga tgtacttgaa agagtcaacg       360
     gctttgcaga ttgtgttaag aaataaatta gaaaaattaa agttaaaaga ctacagtgat       420
     tctgcaacct tttttagtga ctttgaaaaa tccataaatg aactgaaggc ggcaggtgca       480
     aaagttgaag aaaaagaaaa actgaattat atgttaagaa cgcttccgga atcttatagt       540
     tacgttggag atttgatcga tacactcaag acagaagatc aaacagtgga atatgtgaaa       600
     agcaagataa aaatgctcga actgaaaaat cgagaaagtg aaagtgcaga ttccaaatcg       660
     aatgcatttg ttacggaatc aaaacaaaat cgagaatgga gaaatccggc ggatcaagga       720
     tgcttcaatt gtggaaaatt tgggcattat aaaaaggact gtacggagag tggcaagggt       780
     tcatggcgag agccacatcg tggcagcacg cgcggaagag ggcagcagcg aggcacgtgg       840
     cgcggtggcg gttacaataa acgaggcagt ggcagcacga acggccgcgg aggacattac       900
     aattcacgtg gtagagggca tcactggcgg cgagaacaga acggacaaga agcagcatct       960
     ggaggaggag tattccatac cgtagtcgaa gtaaactcgt taaatagaga ggttaaggaa      1020
     aacaatcaaa tacattggct tttagacagc gggtgtactg atcatataat taacaatgaa      1080
     aaatatttta gcgaatgtac aacattgaat gaaccaatta atgttaaagt tggggatggt      1140
     cgaatattaa aagcaacgaa ggtaggaaaa gtaaatattt tatttccaat ttataataga      1200
     aaaagaaagg taacattatt taatgtattc tatgtaaaag agatgaaaca aaatctaatt      1260
     agttattctc aggtgacaga aagaaataaa attgtatcta caggaaataa atcaaagatt      1320
     tatgataaat ttaatagact tctcgcaata gcatggaagg aaggtaggtt atacaaaatg      1380
     acaagttttc cgtgtgatga atcagaggtt aacgtaacga gcagttataa taaagctgga      1440
     aacataagct tgaaagaaaa atggcatcgt atactaggcc atgtaaattt taattattta      1500
     actactttat gcaaaaatca attgttagat ggtataccta atgagataga cactgaatat      1560
     ataaaatgta gaatatgtag aaaacaagat gcacaattta ccttttgaga ataatagaac      1620
     tagagctaaa gaaattttag aaattgttca tactgatgta aatgggccac ataaaaatct      1680
     aggaatgaat ggtgaaaagt actttgttac gtttattgac gattacagta aagcagctaa      1740
     agtttttgtg ataaaatcta aagatgaagt ttataaatgt ctgttagaat acataaatga      1800
     ggtagaaaat aaaactggga aaactattaa aaaacttaga tgcgataacg ggaaagaata      1860
     cttaaacaga aatatttata agttagccaa agaaaaagga atttttattg atacttgtcc      1920
     accgtatgta catgaattaa atggaacagc tgaaagatat aataggtcaa ttatggacat      1980
     agctagatgt ttattagcag aagcaaaagt aaatgttaaa ttttggccag aggcaatttt      2040
     agcagcagct tatcttaaaa atagaacact agcaaatact atagaaaaaa agacaccgta      2100
     tgaaatattg tttggtaaga aaccaagtgc aaaatatctt cgtatgtatg gtagtagggt      2160
     ctttgtacgt gtaccagaac aaaatagaac ttccaaatgg gatagaaaag cggacttggg      2220
     aattttatta ggctataatg aagttggata tagagtctta attaataata gaattgtgat      2280
     tgctagacat gtagatatag tagaaaatga tataagatgt ataggtcttg acgaatatga      2340
     aaattcaagt gattcagaaa caggcgatga aaatctagat gattgtttag aaaattttga      2400
     agactgtcaa gagataaatg aacaggaatt aagaggaaaa gagaatgaaa ctgagtcaaa      2460
     tgcaggacaa aaacaaaaga ataatcaggt tcaagaaata agaaagtcaa gtagagtaaa      2520
     gaaaaagcca gttaggtatg atgaaaatta tgtttacaat aactgtattt atattaatta      2580
     ttgtagtgca gatagcccga ataattttga ggaggcgata aattgtgatg aatctgaatg      2640
     ttggaagcaa gcgatgaaca aagagtttaa ttgtctaagt aaaaataaaa cgtggaaact      2700
     agtcgatcag ccaaagaata agaaagtctt agatgtaaag tgggtgtata caaagaaatc      2760
     cgaaaataag tttaaagcta gattagtagt aagaggcttt caacaaaagg aagtagtaga      2820
     tgatatttat tcaccagtgg ctaaaatgca aacgctaaaa attttattgt catactgttg      2880
     ccaaaagggt ttaattatag aacaaatgga tgtagagaca gcatttttaa atggtaaagt      2940
     tttatagaga cagcattttt aaatggtaaa gtttggtaaa gttttcagaa atttatgtta      3000
     aacagccaag aggttacgaa gacgggtcaa ataaagtatg taagttagaa aaggcgctgt      3060
     atggtttgcg agaaagtccg agagcttggt atgaatgtct tgatgaattt ttaaagaaac      3120
     taggatttaa gcgtagtaaa tatgactatt gtttatatgt gttggctaat gacgataata      3180
     taatatacct aataatattc gttgatgatc tattaatttg ctgtaaaaat aaaaagaaaa      3240
     taattgaaat taagaggtcg ttgtcaaata gatttagaat gaaagatatg ggggaagtga      3300
     agcactatct aggaattgac attgagtata attacgaaag aaatgttatg gctctaaatc      3360
     agaaatctta tattgaatca ttagccacaa aatattatat aaaatcaaca ttttagaatg      3420
     ttgattaaat gtttcttgct tactgggaca ccaatggaaa ctaacttaaa attggaacaa      3480
     gcgagtgtcg tatctaatga tatacaattt agaaatataa ttggcgcact tttatacatc      3540
     agttctggga ctaggcccga tataagtttt agtgtcaact acttgagtag atttcaaaat      3600
     tgttacaatg caactcatta taagtatgcg ttaagaatgt taaaatatct ttacttaaca      3660
     aaagatttaa agttaattta taaaagaaat gaaaatgtag agattataga ttgttatgta      3720
     gacgcagatt gggcaggtga ttgtgaagac agaaagtcga caacaggcta tattgtaagg      3780
     ttttttggaa atgtagtata ttggaaatct agaaaacagg gtagtgtaac aaaatcttct      3840
     acttctgctg aatatgtagc tttatcagaa gctgtaagcg agatacaatt tgtaaaagat      3900
     attttagagg attttgatat ttatattaag aagccgatta aaatatttga agataattca      3960
     ggagcattaa gtattgcaaa atatggcaac tttacaaaga attctaaatt catagaagtt      4020
     cactatcatt ttgtaaacga aaagtatatg aaaggtatta ttgacattgt aaaagtcgag      4080
     actgaatata atactgctga tttacttaca aaaccattaa gcaaagaaaa atttgaaaaa      4140
     tttagaaaca tgttaaacat taaggagttt attatataag cattttatca taagtactat      4200
     aaaagaaaaa ctaatataaa tgtaaggagg cg                                    4232
//
ID   Copia-1_Cfl-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   AEAB01029077;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_Cfl_;
KW   Copia-1_Cfl-I; Copia-1_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-231
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01029077; Positions    8030    7800.
XX
SQ   Sequence 231 BP; 68 A; 35 C; 52 G; 76 T; 0 other;
     tgttgaagta tgtacattta tattcggtga cgccatctat gagtatgtag ggagcgcggt        60
     tggtgtcctg tctttgatgt gtgtattctt atgttcttat aataataaaa agacatgtgg       120
     tgcaacgcag tggtgcgagc acgttcttaa atcaaagata ttagaaagag ctattataaa       180
     gccccagatt gtattatatc agtccttcta aagatcccgg taaatatgac a                231
//
ID   Copia-1_CoFl-I repbase;    DNA;    INV; 6941 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6941
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2315-2315 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           803..6679
FT                 /product="Copia-1_CoFl-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MLIGHFNSLSLCMSHMMLAPFSLAFAYARSPCHFXKK
FT                 TNSLTRTXIKYKILLPIYSLLILGQNALNMLNDAYKKIEDDLGELDEVVVT
FT                 RKNNQAIFSVNNETVAYMGGDAHHNQDMLDLFNLIEKCAGKIRLVHKQRIQ
FT                 SKGPKDRKINLIDTSSKDKNKDLKDSKINLIDTSSKDKNKGPKDRKINSSN
FT                 XSSKDKNKDVRDRKKNFTDTSTPNKVKDLKSKNLDSIDSQFKDLQNRKDNL
FT                 KKELDSLHKEMAHANYELKKELMKRTGQNIKPKEIIYSRKEITEASKKDIE
FT                 EIRKLIQQERHQQSSWMSMRFEVVASQHKKALEKEREENRRAQETIRAEFE
FT                 QRLATQQRQMEALERELARSRIQKVNKFTTSTPGPKLSKQLINLNSDSIDN
FT                 XLTFERAAPNDSLKIEVINKDSLGCFNYSLTNATKLELFLKQLQSELKSKK
FT                 LLHTIDSKLEATMNITQEKMEEDKEQALNVILGRLSLDYQNKVYHITDPST
FT                 MIQKIKDIKRGDIKMSAYQIRNKIHSVRFDPKKQSATKFCEFFDGLVRDFE
FT                 LISKTNSFPEDEKRDSFYHAIIDGVPDVKIADFNRLFESEDGLSFKYLRQY
FT                 ILKQESEGSLPRPTTGSGASRGGANAGPSRGGTGTSAGPSRGGAGSRPATN
FT                 VAAANVATASTLCYECNDNGHYARDCPKKGQNLRRCYTCQRFVQNLREHIG
FT                 RCRGNSNKSNDWDFKRNTGGGNNKNNFKDSNKRKHEKQHTNHNNKKAKVDN
FT                 KKQGEEGNNNVEILRSNACSGLFAVNPETLLSTRAEETRDNGCKKIEFVAD
FT                 SGATEHFANSKLYFKNFNGCKNKLIKCANKDSSADLRAEGEGCVSGKNNQN
FT                 KIILDRVVCAKALAGNLLSLRRFAERGMSIYLDNTKLDIFDPRSNETIISG
FT                 VYKSPYWIVELLQDGQSTSNNEKCKEIIDCLMVENPLKAKTEKVQQVSTND
FT                 RSCPGISSNESGRAGSHSSHQSEFKKTIKDRKINNCDDLMIGEIPEAQSPF
FT                 TEKYRKFERNNRAMLWHVRFGHASAEYLKALQRKYPDNKDLNKAIFDSFIT
FT                 TCEVCQVAKIKRLPFSTKRDRATKPLEIVHADTMGPISPATYPKGYKFIIV
FT                 YTDDYSRLTMAYPVKTKCEAGRCLDNFVTSARNLLGFDAKICYLRTDQGTE
FT                 FTGGQTVEVLQRLGAELQLACPDTPQHNGVSERVNRTLQNKVRAYMYDSGL
FT                 RENMWDLALGSAVYAYNRTPHRSNDMIAPLGKFAPNLKIDITQIRRFGCVA
FT                 FIKIQRNTGTKFGPQGIRVVLVGYTPTGYSFLRPEDGKLYESRDVKFQERL
FT                 VFRDIWGKDKIANWGNHKTDIKQDEWFVKFDKTSPKESLETEGEPVVKRKR
FT                 GRPKKVEDLGQESPKQLARINDTSFAGAIDTNKLNKLLQSKGDVDCLIAEV
FT                 EDEMSHALIAGLNKDPANYKEAIASPDRDKWLRAIDEELESMRKNQVWKLV
FT                 ERPTVNAEGGKPNIIDSRWVLKKKIDKDGNTKFKARLVIRGFKDKNKYDLQ
FT                 ETYAPVSGLALVRSVISIINRYNLETCQLDVKTAFLNGSIKEEIYMEIPEG
FT                 LLDGDSFKKAQVCKLEKALYGLKISPKRWNERFRETASKLGLRSHTSEPCL
FT                 YTWREANNFLVLILYVDDMMIASNCAGKMNEIKTGLQSEFEMSDLGEVGTF
FT                 LGIKVERDRKLHTISLTQTPYIDKMLEKFGFNESKPQRTPMVTNQVLNRQR
FT                 KDREDSEDAGELSTTITRINVPYREAVGSLLYLANTIRPDISYSVNVLSRH
FT                 QIGPTEDDWKMVKRVFRYLQHTRTLGLTYRGRKDGLEAYSDASLADCKGSI
FT                 TTGGYLLRLYGDTVAWKTRKQNYVAISTCEAEYVAMCDASQELIGLEHSIS
FT                 IILSRTLLPADLWCDNKAAGASAKIDGGKRLRHMTEIKAHYVKECVSRGKI
FT                 IVKWIPSKEQLADIFTKPLPFELHERLTKEILNVN"
XX
SQ   Sequence 6941 BP; 2388 A; 1304 C; 1596 G; 1645 T; 8 other;
     ggttatgggc cctaaatggt agtgtgggtg wagaatctgt tcgatcgcgt cttktgtttc        60
     tctttttccc ttttccgctc cgcgctcgag cttatcgcgc gtcccctgtg tgccttcttt       120
     tcatcttttt gtttacgtga aaacgtaatg gcggaagcaa ccgggagctc tgtgtcgggc       180
     agcgagcact gcgagacgga agagcttggc agtcctctca ccccgactac caccgaagcg       240
     gcagagggac ggccccagga ggcagcagag cagaatcggg atggaggcgc agcggccgag       300
     tcacctcgag atgcggacgt cgcctctact ctcgaggctt ccggcggagc tgtaggaagg       360
     gtggagatta agaagagagt gagcagcagt aagtactaga aatagatatt gctttgaaga       420
     ctcggtaatt acgtgaagtg ttgttatcgt taagtcacgt tcgcttacaa tttctaaaga       480
     caaagattgg tgtcttgcct taagatagag caagacagct cacttaagat tgcatgattg       540
     atactccctt ggttagtagg ccttcctttg tttttacgga gattcgcaga actcgagaga       600
     gccggcacgc gtttgtttat gtgagggaga ggcccgcatc gtgacaaagg aagcgcgttt       660
     cttgataaac ctgccagtca ccgccaaggg ggacgcctcg aggcgaggag gggatgcgcg       720
     ctttggttat ggcttgcgtt cggccgaact gagtgtgcgc gtcctctcac gctacggctg       780
     gtggcgcgcg tcgtagtaaa cgatgttgat cggccatttt aattctctct ctctatgcat       840
     gtcacacatg atgctagcgc cattttccct cgcatttgct tacgcccgat ctccgtgtca       900
     cttcmacaag aaaactaata gcctaacgcg cacgcwaata aaatataaaa tacttttacc       960
     tatttattcc ctgttaattt taggtcaaaa tgccctcaat atgctaaatg atgcatataa      1020
     aaagattgaa gacgatctag gggaactaga cgaggtggta gtaactcgta aaaacaacca      1080
     ggccatattt tccgtaaata atgaaactgt tgcatacatg ggaggagatg cacatcacaa      1140
     tcaagatatg ttagacctgt ttaacttgat agaaaaatgt gctgggaaaa ttcgactcgt      1200
     ccacaaacag cgtatccaaa gcaaaggtcc taaagataga aaaataaatt tgattgatac      1260
     ctcatctaaa gataagaata aagacttgaa agatagtaaa ataaatttga ttgatacctc      1320
     atctaaagat aagaataaag gccctaaaga tagaaaaatt aattcgagta atamctcatc      1380
     aaaagataag aataaagatg tgagagatag aaagaaaaat tttactgata cttcaactcc      1440
     taacaaggtt aaagatttga aaagcaaaaa tttagattca attgatagcc aatttaaaga      1500
     cctgcaaaat aggaaagata acctgaagaa agagctagat agcctacata aagaaatggc      1560
     gcatgcaaat tatgaactta agaaagaact aatgaaaaga accggtcaaa acatcaaacc      1620
     taaagaaatt atatactcac gaaaagaaat tacagaagcc tcaaagaaag acatcgagga      1680
     gatcaggaag ctgatacaac aagaaaggca tcagcagagc tcctggatgt cgatgaggtt      1740
     tgaggttgtt gcctcacaac ataagaaggc cctggaaaag gaaagagagg aaaataggag      1800
     ggctcaagag acgattcgag ctgagtttga gcagcgtcta gccacccaac aaagacagat      1860
     ggaggctctt gagcgagaac tggccaggag tcgaatacaa aaggtaaata aatttactac      1920
     atctactcca ggacctaaat taagtaaaca attgatwaat ctaaactccg actccattga      1980
     taatwcgctg acgtttgaac gcgctgcgcc taatgatagt ctaaagatag aagtcattaa      2040
     taaagatagc ctagggtgtt ttaattattc cctcactaat gcaacaaaac tagaattatt      2100
     cttaaaacaa ttgcagtcmg aactaaaaag taaaaaattg cttcacacaa ttgattcaaa      2160
     actggaagca actatgaata ttacccaaga aaaaatggaa gaagataaag aacaggccct      2220
     aaacgtaata ctaggtaggt tgtccctaga ttaccaaaac aaagtatatc acattactga      2280
     tccatcaaca atgatacaaa aaattaaaga tattaaaagg ggtgacataa aaatgagcgc      2340
     atatcaaata cgtaacaaaa tacattccgt tagatttgac cccaaaaagc aaagtgctac      2400
     taaattttgt gaattttttg atggattggt aagagatttt gaattaatta gcaaaactaa      2460
     cagtttccct gaagatgaga aaagagatag tttctatcat gcaattatcg atggagtacc      2520
     ggacgtaaaa atagccgatt ttaacaggct gtttgaaagc gaggatggct tgtcttttaa      2580
     gtacttaaga caatatatcc tgaaacagga atcagaaggg tcacttccaa gaccaacaac      2640
     gggtagtgga gcaagccgag gtggggcgaa tgcaggtccg agtcgaggtg ggaccgggac      2700
     cagtgctggg ccaagccgag gtggggcagg ctcgagacca gccactaacg tagctgctgc      2760
     taacgtggcc accgccagca ctctatgcta cgagtgcaac gacaacgggc actacgcaag      2820
     ggactgcccg aaaaaagggc agaaccttag gcggtgctac acctgccaac ggttcgtgca      2880
     gaacctgcga gagcacatag ggaggtgcag aggtaattca aacaaaagta acgattggga      2940
     ttttaaacgc aatactggtg gtggtaacaa taaaaataac tttaaagata gtaataaacg      3000
     gaagcatgaa aaacagcata caaatcataa caacaagaaa gccaaggtcg ataacaagaa      3060
     acaaggcgaa gaaggtaata ataatgtaga aatacttagg tctaatgcat gcagtggttt      3120
     gtttgctgtt aaccccgaaa ctttgctctc tacgcgcgcg gaggaaacac gagataacgg      3180
     ttgcaagaaa attgagttcg tagcagattc aggcgccaca gaacattttg ctaattctaa      3240
     actctatttc aaaaatttta atggatgtaa aaataaatta attaaatgcg cgaacaaaga      3300
     ttcctccgcg gacttgagag cggagggaga agggtgcgtt tcgggtaaaa ataaccaaaa      3360
     caagataatc ctagatagag ttgtatgcgc taaggcactc gctggaaact tgctgtcgct      3420
     tcgccgtttt gctgaaaggg gcatgagtat ataccttgat aacacaaaac tagatatatt      3480
     tgatccgcgt tctaatgaaa ctataatttc tggtgtctac aagagccctt actggatagt      3540
     agaactactg caagatggcc agagcacaag taataatgag aagtgcaaag aaattataga      3600
     ctgcttaatg gtagaaaatc ccctgaaagc aaagactgag aaggttcagc aagtcagcac      3660
     taatgatagg agctgccctg gaatctcaag taatgaatca ggaagagctg gttcacacag      3720
     ctctcatcag agtgagttta agaaaacaat taaagataga aaaatcaata attgtgatga      3780
     ccttatgatt ggtgagattc cagaagctca aagcccgttt acagaaaagt acagaaaatt      3840
     tgagagaaat aacagagcca tgctctggca tgtaagattc ggacatgcct cagcagaata      3900
     tctcaaggca ctacaaagaa aatatccgga caataaagat ttgaataagg ccatcttcga      3960
     cagcttcatt acaacatgcg aggtgtgcca agtcgctaaa atcaagagat tgcctttcag      4020
     tactaaaaga gatagggcaa ccaaaccact tgagatagtt catgctgata caatgggacc      4080
     gattagccca gctacttatc ctaaaggata taaatttata atcgtctaca cggatgacta      4140
     ctcaagattg actatggcat acccagtgaa gacaaaatgt gaagcgggac gttgtctgga      4200
     caattttgtg acaagcgcac gaaacctgtt aggttttgat gcaaagatat gctatcttcg      4260
     aaccgatcaa ggcacggagt ttacaggagg ccaaacggta gaagttctcc agaggttggg      4320
     agcagaactt cagttggcct gtccagacac tcctcagcac aatggagtct cggaacgggt      4380
     taatcgtacc ttgcaaaaca aagtgcgagc ctacatgtac gactccgggc tcagggagaa      4440
     catgtgggac ttagccctgg gtagtgcagt atatgcctac aatcggacac ctcaccggtc      4500
     taacgatatg atagcccctt taggaaagtt tgcgcccaat ctgaagatag acataaccca      4560
     aatcagaaga tttggctgcg tcgcttttat caagatacaa aggaatactg gaaccaaatt      4620
     cggtccacaa gggatacgag tcgtgctggt tggttatacc cccactggct attctttctt      4680
     aagacctgaa gatggaaaac tctatgagag tcgagacgta aaattccaag aaagactggt      4740
     gttcagagat atctggggaa aggacaaaat agcaaactgg ggaaaccaca agacagatat      4800
     taaacaagat gaatggttcg ttaagtttga taagactagc cctaaagagt cattggaaac      4860
     ggagggagaa ccagtagtca agagaaagcg cggtcggccc aagaaagttg aagatcttgg      4920
     tcaagaaagc cctaagcaac tcgctagaat aaatgatacg agttttgcag gagccatcga      4980
     cacaaacaag ttgaataaat tgctccaatc gaagggcgat gttgactgtt taatcgcaga      5040
     agtcgaagat gaaatgtcac atgccctgat tgctggacta aacaaagatc ccgcaaacta      5100
     caaagaagct atcgcatctc cggatcgcga taaatggctc agagcaattg atgaagaact      5160
     ggaatcaatg cggaaaaacc aagtgtggaa acttgtagaa agaccaaccg tgaacgctga      5220
     aggtggcaag cccaacatca tcgactctag gtgggttctg aagaaaaaaa tagataaaga      5280
     tggaaacacg aagttcaaag cgaggttggt gattcgtggc ttcaaagata agaacaagta      5340
     cgatctgcaa gaaacctatg ccccggtgtc tgggctggcc ctggtaagat cagtaatatc      5400
     aataataaat agatacaatc tggagacttg ccaacttgat gtcaagacag ctttcttaaa      5460
     tggatctatc aaagaagaga tatatatgga gattcctgaa ggcctgcttg atggtgacag      5520
     tttcaagaaa gctcaggttt gtaaattgga aaaagccctt tatggactta agatcagccc      5580
     aaaaagatgg aatgagcggt ttcgcgagac tgcatctaaa ttaggactac ggtcacatac      5640
     gagcgagccc tgtctatata catggagaga agccaataac tttctagtcc tgatcctata      5700
     cgtggatgat atgatgatag ccagcaattg tgcaggcaaa atgaatgaaa ttaagactgg      5760
     tctgcaatct gagtttgaga tgtcagatct tggcgaggtt ggcacatttc taggcatcaa      5820
     agtggaaaga gatagaaaac ttcacacaat ttcactgaca caaacaccat acatagataa      5880
     aatgttagag aaatttggat tcaatgagtc aaaaccccaa agaacaccaa tggtgacaaa      5940
     tcaagttttg aatcggcaaa gaaaagatag agaagattct gaagatgctg gagagttgag      6000
     cacaacgata acgagaataa atgtgccgta cagagaagca gtcggtagtc tgctgtattt      6060
     agccaacaca attagaccag acatttcata ctcggtgaac gtactgagta gacatcaaat      6120
     cggcccaact gaagatgatt ggaaaatggt caaacgggta tttcgatatt tacaacacac      6180
     aaggacccta ggattaactt acagaggccg taaagatgga ttggaagcct attcagatgc      6240
     gagtttggca gactgtaaag gctcaataac aacaggcgga tatctcctaa gactgtatgg      6300
     ggatacagtt gcttggaaaa caagaaagca gaattatgtt gctatttcaa cctgcgaagc      6360
     agaatatgtg gcaatgtgcg acgcaagtca agaattgatt ggactggaac actctataag      6420
     tattatattg tctcgcacct tgttgcccgc ggatttatgg tgtgacaaca aagctgccgg      6480
     agcaagtgct aagatagatg gtggcaaaag gctgagacac atgaccgaga taaaggctca      6540
     ctacgttaag gaatgtgtat ccagaggaaa aataattgtt aaatggattc catccaagga      6600
     acaactagca gatatcttta caaaacccct gccgtttgaa ctgcatgaaa gactaacgaa      6660
     agaaattttg aatgttaatt agcgtaaaat gcatgataat taaatttgaa cttgagatag      6720
     taaaattagt aaattaataa tagatagata atgatggtag acatgctgat taatgtattt      6780
     tctgtgtatg ttttagctcg tcggaatcaa ccacaatgag tgatccagaa gcccacgtgc      6840
     tccacatcat tggctgatta aaactcattt atattcagtg ttcatgttaa aatatatcct      6900
     tttctttcat tttaataaat tcagatacga acgggaggga g                          6941
//
ID   Copia-1_CoFl-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-337
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2285-2285 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 337 BP; 82 A; 73 C; 65 G; 117 T; 0 other;
     tgttagatgt attgttggcg ctcgtaactg aattattgcg catgcgcagc agcgggagga        60
     cgagacgctg tgacgctgca cttcagcgtc aagtagcttc ggtttttgtt cactctcgcg       120
     cagtcagcca gtctgttcac acacgcattc tctgccttcg catttctctt tacgttttag       180
     tttacttttt ctgttcgctt aacttttgta ctcaagatag taaagtataa agatagtcca       240
     aacttaagat agtgtaaata aacgtgttta atataattct atatttcaag tgtgttttta       300
     ttcgccaagt cacctgccta atcccatact gctaaca                                337
//
ID   Copia-1_CQ-I repbase;    DNA;    INV; 6112 BP.
XX
AC   AAWU01000183;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_CQ_;
KW   Copia-1_CQ-LTR; Copia-1_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6112
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 317-317 (2011).
XX
DR   GenBank; AAWU01000183; Positions   18690   24801.
XX
CC   'TAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1790..4732
FT                 /product="Copia-1_CQ-I_1p"
FT                 /translation="MAEKFAIQKLNGRNWQTWNIRIEALLSREDMWSVVTD
FT                 AIPVGDARKPEWVAQDRKARSTILLLIEDNQFPIVKGSTHAKEVYDKLKAY
FT                 HLKTTRSFRVSLLKRLCSTNLTERGDLEQHVLELDDLFDRLQEAGMDLASD
FT                 VRVCMLLRSLPSSFDHLVAALDLQSDKDLTLDTVKSKLSDEYHRRQERDGG
FT                 GELKVEKAMRSAEQCEKVCYQCKKPGHLMRNCRLGRRRSVTPAKKEENGRA
FT                 KAAHSDAKAVAFTAGDPGDERAGWVIDSGASAHMTSDRSIFTSLREFAGGW
FT                 ITLADGKKTQILGEGSVVLFGLDGEEDVVKIEVKEVKFVPGLSTNLISVSK
FT                 LAHNGLKVFFDDVGCQISDPSGRVEATGDRRGGMYFLCLAEASAGQHTESC
FT                 QHLWHRRLGHRDLAAEESINNEQLATGMKVRDCGNRSVCECCLEGKSAKAP
FT                 FSPVTERNSTQILDIVRTDLCGPIQMSTQTVKRYVMHLIDDVSRCTSEAVD
FT                 RIKVRWTENRTCRKMQINRLDGGNGFDSKELRKCDAKFIELSNRSSQVELP
FT                 AAGPPAVGPPAVRETVAGPPAAERPAAETPAAEEEIELLPCGEKLEEVPEE
FT                 ENEGNETVSDLQDAVPEEEPEDYPAPTGGADGAGGGRPKRYIQRPKHLDEY
FT                 EVGVASCAFEDPENYKEAMKKPEWRKAMQELAALSSRTALGKEELVCRRRR
FT                 SIYGLRQSARCWNRKLNEVLTKLGFKAADADPCLYRMQQGGTTVLLLVYVD
FT                 DLHDIDRIFRCLQREFELTNLGGAKHFLGMEVKRDDGCYKVRVKNHIDKLL
FT                 TKFGMEQAKTMKSPMDPGYLKAEEPSTPFGDQTKYRSLVGGLMYIACTARP
FT                 DIAVGAAILGRKFSAPNEADWTAAKRVLRYLKATREYYLRLGGEPGEALVG
FT                 HSEADWAGDPGNRRSTSGFVFTFGGGAISWASRQQLCVTKQIALEYCPTNR
FT                 LVADLFTKPLGPLKLGQFCGTLGLLA"
XX
SQ   Sequence 6112 BP; 1554 A; 1336 C; 1810 G; 1412 T; 0 other;
     tttggcgatc ctgccggtta attacgggga cctgaaggga aaattttgaa cctgcgaaaa        60
     tgtttggaga atccccaact tgaggagatt ttgtgcttca attgaggttg gaagtgtttc       120
     gtggaagtgt tttgatgtga ttgttttgac tttggtaagt tgcggtgtgc ttgctggtgc       180
     cggatggaag gcaggccgat tttattccct ttaatttgtt tgggcatttg gaatgtcccg       240
     gcgatcacgt gggttgaaat cggtctaatt ttgaagacct tcaaaagatg ttttactgtc       300
     gtgtttggac aaatgtggtt gaaagaggca cagacataaa tggaattgtt gttgcgagcc       360
     ggagtcgcaa aagcgggttg ttgctaaaag ggttgccagc aggagatgga acaggttgtt       420
     gtaagatgag aagctcacca ggcatgagac ggattgtgac ggaatttggg accgccagat       480
     gaaagagctt gcattgccta gtaacgcgca ggcagggaac gaattggatc attggcctgt       540
     agccaagaga gttaaccttt tcatgataag acgcctgcag gagcgtaata tgttgttctg       600
     ctctgttcca tgtaatgtca gtgtcactcg ttgagtactc cagcgtcgtc gtctacttcg       660
     gtgccgtcgg cgcgtactcg tcactcgggt gtgcacacgt gcaaacaggg gagagagtgt       720
     ggatctggtc agtatagatc gcgataccga gcgagcgtgc ggcaggttcg cctatgtccg       780
     actacaaaca cgcttcgctg ccaccggttc gcgtgatcca cacagtgcga ctgatcattc       840
     cattcaaact caaacaaaca tttatgaatt gcgaggtgtg acggcacggc accactggaa       900
     attgtaacga atttacgaat tgcgaggatg gaggtgagac ggcacctttg agccgtttgg       960
     gaagaaagtc ccactggaaa ttgtaacgca tttacgaatt gcgaggatgg agatgagacg      1020
     gcacctttga gccgtttggg aagaaagtcc cactggaaat tgtaacgcat ttacgaattg      1080
     cgaggatgga ggtgagacgg cacctttgag ccgtttgaga agaaagtccc actggaaact      1140
     gtaacgcatt tacgaattgc gaggatggag gtgagacggc acctttgagc cgtttgggaa      1200
     gaaagtccca ctggaaactg taacgcattt acgaattacg aggatggagg tgagacggca      1260
     cctttgagcc gtttgggaag aaaatcccac tggaaattgg aacgcattta cgaattgcga      1320
     ggatggaggt gagacggtac gtttgagccg tttgggaaga aaagctcaca ggaaatttgg      1380
     tcgcatgtat tgcgatgttg gatgtgtgga aatctgcgct gtccacatca agtctgcgca      1440
     catcctaggc ccttctggca accacgatga cgacgatgac gagctctcct tctttgacga      1500
     ctcgtcgatc gtcctcagaa ccactttagc gatcaactcg atcagtcgtg ttttttacaa      1560
     caaataaacg ttagttagtc ttaactgtaa attctcgcgt tttcattctg actttcgact      1620
     tctgctttcc tctggtcgcc gataggttat gggcccagca gagtcggaat agaaggttcg      1680
     gttgtaaaaa gaaaaaccgc gtggttttct ttgttcccgc agtggaaaaa gtttttttag      1740
     agactattgt ttgtctgtgc ctttgtgttc cgtaccggaa gtgaacaaaa tggcggaaaa      1800
     gttcgccatc cagaaactga atggccggaa ctggcaaacc tggaacatcc ggatcgaagc      1860
     gctgctttcc cgcgaagaca tgtggtccgt cgtgacggac gccatcccgg tcggggacgc      1920
     ccggaagccg gagtgggtcg cacaggaccg gaaggcgcgg tcaacgatcc tgctgttaat      1980
     tgaggacaac cagttcccga tcgtgaaggg cagcacccac gcgaaggaag tgtacgacaa      2040
     gctgaaagcg taccacctga aaacgactcg gtcgtttcga gtaagccttt tgaagaggtt      2100
     atgttcgacg aacctcaccg aacgcggtga cctcgaacag cacgtgttgg agttggacga      2160
     tttgttcgat cgtttacaag aggctggcat ggacctggcc agcgatgtcc gggtgtgcat      2220
     gctgctccgc agtctgccgt catcgtttga ccacctggta gcggcgctgg acctgcagtc      2280
     ggacaaggac ctgacgctgg acacggtcaa gtccaagctg tcggacgagt accatcgtcg      2340
     gcaggagcgc gatggcggcg gtgagctgaa agtggaaaag gccatgcggt cggccgagca      2400
     gtgtgaaaaa gtgtgctacc agtgcaagaa gcccggacat ttgatgcgca attgtcgatt      2460
     gggcagaaga agaagtgtca cgccagcgaa gaaagaagaa aacggcagag ccaaggcggc      2520
     tcacagtgac gcaaaagcgg tcgcgttcac ggccggtgac cccggtgacg aaagggctgg      2580
     ctgggtgatc gatagcggcg cgagtgcaca catgacgagc gatcggtcga ttttcacctc      2640
     gctccgagag tttgccggcg gctggatcac gctcgccgac gggaagaaga cgcaaattct      2700
     aggtgaaggc agtgttgtgt tgtttggcct agacggcgaa gaagatgtgg tgaaaataga      2760
     ggtgaaagag gttaagtttg tgcccggctt gtcaacgaac ttgatatccg tgtccaagct      2820
     ggcgcacaac ggcctcaaag tgttcttcga cgacgtcggc tgccagattt cggaccccag      2880
     cgggcgtgtg gaggcaaccg gagatcgtcg cggcgggatg tacttcctgt gcctggcaga      2940
     agcatccgca gggcagcaca cggagagttg ccaacaccta tggcaccggc ggctgggcca      3000
     tcgtgacttg gcagctgaag aaagtatcaa caatgaacag ctggccaccg ggatgaaagt      3060
     gcgtgactgt ggcaatcggt ccgtttgcga gtgttgtctg gaggggaaat ctgccaaagc      3120
     ccccttctcg ccagtgaccg aaagaaattc gacgcagatt ttggacatcg tgcgtacaga      3180
     cttgtgcggc ccgatacaaa tgtcaacaca aactgtcaag cgttacgtca tgcacctcat      3240
     cgacgacgtc agtcgatgca catcggaggc cgtggacagg atcaaggtac ggtggacgga      3300
     gaaccggacc tgccggaaga tgcagatcaa ccgtttggac ggaggtaacg gattcgacag      3360
     caaagaattg agaaagtgcg acgccaagtt catcgagttg agcaacagga gttctcaagt      3420
     ggagttgcca gccgcggggc cgcctgccgt ggggccgccc gccgtcagag aaacagtggc      3480
     gggaccgcct gccgcggaac gacctgccgc ggaaacgcca gctgctgagg aggagatcga      3540
     gctgctgccg tgtggggaaa agctggaaga agtgcctgaa gaagaaaatg aagggaacga      3600
     aacagtgagt gatcttcaag acgcagttcc tgaagaagag cccgaggatt atccggcacc      3660
     aaccggcggc gcggacggcg ccggcggcgg tcgaccgaag cggtacatcc agcggccgaa      3720
     acatcttgac gagtacgagg tcggcgtggc atcgtgtgcg ttcgaagatc cggagaacta      3780
     caaggaagcc atgaagaaac ccgagtggcg gaaggcgatg caggagttgg cagcactgtc      3840
     cagccgtaca gcgctgggaa aggaggagct cgtgtgcaga cgtcggcgca gcatttacgg      3900
     tttgcgccaa tccgctcggt gctggaaccg gaaactcaac gaagtgctga cgaagctggg      3960
     gttcaaggcc gcggacgcag atccatgtct gtaccggatg cagcaaggcg gaacaactgt      4020
     gttgctgctt gtttacgtcg acgacttgca tgacatcgac cggatcttcc ggtgcctaca      4080
     gagagagttc gagctgacca acttgggggg tgccaagcac ttcctgggca tggaggtgaa      4140
     acgcgacgac gggtgctaca aggtgcgggt gaagaaccac attgacaaat tgctcacgaa      4200
     gtttgggatg gagcaagcga aaaccatgaa gtcacccatg gaccccgggt acctcaaagc      4260
     cgaagaaccg agtacgccct ttggagacca gacgaagtac cggagcttgg taggtggact      4320
     gatgtacatc gcctgtactg ctagaccgga cattgcggtc ggtgcggcaa ttcttgggcg      4380
     caagttcagc gcgcccaatg aagccgactg gaccgcggca aaacgtgtgc tccggtatct      4440
     aaaagcgacg agggagtact atcttcgact gggcggtgag cctggggaag cacttgttgg      4500
     gcactcggaa gcagactggg ccggcgaccc aggaaacaga cgctcaacgt ccggctttgt      4560
     tttcaccttt ggaggaggag caatctcgtg ggcaagccgt cagcaactgt gcgtcacgaa      4620
     gcagattgcg ttggagtact gtccgacgaa ccggttggta gccgatctct tcaccaagcc      4680
     cctgggaccg ttgaagcttg ggcagttctg cggaacgctc gggctgctgg cgtaggcgtt      4740
     gctgctgtcc atcgaggagg agtgtggaaa tctgcgctgt ccacatcaag tctgcgcaca      4800
     tcctaggccc ttctggcaac cacgatgacg acgatgacga gctctccttc tttgacgact      4860
     cgtcgatcgt cctcagaacc actttagcga tcaactcgat cagtcgtgtt ttttacaaca      4920
     aataaacgtt agttagtctt aactgtaaat tctcgcgttt tcattctgac tttcgacttc      4980
     tgctttcctc tggtcgccga taggatggca cctgtgcacc tggttgacca gtatgatcac      5040
     atttacgagt tctgggggag gaatttgatt tagaaaatga ttacattttc gagcgacgat      5100
     aagggaattt gtagcagcca acacgacaac aggtcctgaa tctgacgtgg agaaaattat      5160
     ctcgtggaaa ttgaggcgat gcttacaatt gaaaagccga ataacgaaaa ctgttttaat      5220
     gatagttcgg aaactgttat agaacaggcg agcgacggtc ttcgtttgga aatgttcgtg      5280
     tgtgaatcga actgggacga tcgctgggaa atgtttgttt actaataaga cttgttgcgg      5340
     accgggacgg ccgcttcata atgttcgttt acaaatcgaa ctgggacgac tgctaggaaa      5400
     catcagacta cgaatcagac tggttgcaaa ccgggaaacc gcttggaaat gttcgtttat      5460
     gaatcggact gggaaaaccg ctaggaaatg tctgtttaca agttggaatg attgtagacg      5520
     ggaaaatatc tgttgacaaa ttcaactaat aagtcgaact gggtctgtcg ctagaaaacg      5580
     tctacttaag aatcggaccg actgcagact gggatggccg ctggaaattt ggccaatttt      5640
     ttgggagctc tcaaggaact tcgatgaagt ttatttttta tgtgtgaaga agcaaaaaga      5700
     ttaggaaatc taagagtttt gctaaagcct agattaatag aattgttgaa ggctcgcgat      5760
     ggatggcatg agaaatggtg ctttggttaa ggattaagat tagccccacc tcattagaag      5820
     aaaggactat aacggtcaat gaatgggata gatgggaagt gtgattgagt tttagattta      5880
     taaagattgc tatttgtcaa aatagaagag ttcacttata aaattactaa tttaatgagt      5940
     atgtgatcat gtcgattttt gctgcggctt ttctaccgtt acctgcaagc gctggagttc      6000
     taaaagctcg ttagaattag agtgatgttt gaagatactt gatttttttt ccctttatca      6060
     ttcaataatt ttgtaaatct cctatgtggt agttttaaga gaggaaagag ga              6112
//
ID   Copia-1_CQ-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   AAWU01000183;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_CQ_;
KW   Copia-1_CQ-I; Copia-1_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 318-318 (2011).
XX
DR   GenBank; AAWU01000183; Positions   18472   18689.
XX
SQ   Sequence 218 BP; 48 A; 56 C; 64 G; 50 T; 0 other;
     tgtgaggtat tagattacca taataagata gacccttttg gaatgtctgt cgctagaacg        60
     gtcggggctg aaccaaggct gaacccactg tgcgcaacgc taggtctagc tgtcatcgga       120
     gtaaacaacc aagcagcgtg cggtccagtt ccgcagtcgc agcgtgcagg tgcatctccc       180
     gtgttgggga ttctccctgg tggccagcgg gtctcaca                               218
//
ID   Copia-1_DAn-I repbase;    DNA;    INV; 3744 BP.
XX
AC   AAPP01018733;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DAn_;
KW   Copia-1_DAn-LTR; Copia-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3744
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018733; Positions   33222   36965.
XX
CC   Positions [2013-2327] - Integrase core
CC   'ATAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           453..3635
FT                 /product="Copia-1_DAn-I_1p"
FT                 /translation="MQGVAIKIEKDIDEKNTEIKKAITMAAQARIEDTLIP
FT                 VFDGTNFTSWKLRLMVLLEYKECKQQATCIKTDKEAEADWTKRDLKARMMI
FT                 MSTVTDRQLEYIGECKSAYEMMKKFDSIYTTKSTALQIIQRGKIEEIKLSN
FT                 YTEVDDFFVDFEKSINDFKAAGGVLEEAEKMRYLIKSLPPNYSYIGDFIDI
FT                 VPEQQRTVEYVKSKIKEKNFNKSETSKRSSVSTFNANAKGVCFSCGKYGHQ
FT                 KKNCYLNQGNQASQIAIQTGQNRGFSHNLGRGKRGNFHGRSRGSYSRGRGS
FT                 HRGYVNETSGNESSAAWSVELQHPAANGPSGCDFKDPSENAYQLKWILDSG
FT                 CTDHIIKSDKYFVSYQDLKIAVDVKLPDGKTLKATKIGNIKLTFKTYYKNK
FT                 TVELKNVYYVNGIQENLLSVSRITKNNIIVAKNSNAKIYDQHNELVVVANK
FT                 VNNLYVIKGIAKETGSIKEVYTNVLKLTNKEKWHRALGHINFKYLDKLVSE
FT                 KLLEGLPDKLEKTEMKCANCLQSKMSNKPFENNRIKSKEILETIHTDLNGP
FT                 HTTGYGGEKYFLTFVDDYSKCTRLYCIKNKSDTVNCFKDYINFVENKFNKC
FT                 VKKLQCDNGKEYLNKDIYTFKARLVVRGFQQKEDIDNVYSPVGKMQTLKTL
FT                 LSYSCVNNLYIEQMDVETAFLNGKVKTEVYINMPLGYEMSEDKVYKLQKAL
FT                 YGLRESPRAWYDTINEFLTGLGFIRSKYDYCLYVDIAKKDPIHLLVFVDDL
FT                 LICCKNFSKIEEVKASLKKRFSMKDLGKISSYIGIDVDYNNDRTKMTLCQT
FT                 KYIESLAEKYMLENSRLYDTPMETNLKLEQASVSTEHIKYRNLIGELLYIS
FT                 TGTRPDITYSVNYLSRFQNCYNETHFKYALRVLKYLYRTKDLKLTYCDNLN
FT                 NDILDCMVDSDFAGDCIDRKSTTGFVIRFQGNPIFWKTRKQNSIVKCSTFA
FT                 EYTAMSEAVTEILFTRNLLMDSFKEKFSQPIKIYEQIIGAIAIAKFGNFTK
FT                 NSKHIEVQYHYINESYNKGLIDIVKVDSDKNLADILTKSLCKTKFFNNRQS
FT                 LKLL"
XX
SQ   Sequence 3744 BP; 1588 A; 527 C; 674 G; 955 T; 0 other;
     tggtagcgga acaaggttga ttaaacaagt aaaggaaaag tgaatagctt tggtataaaa        60
     taaaaaataa acagttaaaa gaaaagtttt agtccaagta aagagcttgc gaactcatac       120
     acacaaatct acgaaaaagt ggcacgacga acgaaaagat tcaaaattaa ggaaaaaaaa       180
     atatatatac taaaaataag aacatctgca ttaaagtgaa gcgtgtttga aggcatttaa       240
     ttaaatcaat catcatagta agcaaatact cacatacatt acaaaggaac acgtggatgc       300
     gaacagatta aaaattttga aacaaaaaac gtgacaaaga ccaagtgaag aactacaact       360
     aaaagcgaaa gaaatataaa agacaataaa agaaaacaga acagctttaa aagtgcttta       420
     agaattctac actgaattca aaaaactgat caatgcaagg tgttgctata aaaattgaaa       480
     aagacataga cgaaaaaaat acagaaatta aaaaggcaat aactatggct gctcaagcaa       540
     gaattgaaga caccctaata cccgtcttcg atggaacaaa cttcacaagt tggaaactga       600
     gattgatggt tctgctggaa tacaaagaat gcaaacaaca agcaacatgc attaagaccg       660
     ataaggaagc tgaagcggac tggactaaga gagacctaaa agcgaggatg atgattatga       720
     gtacagtcac tgacagacag ttggaataca taggtgaatg taaatcagcc tatgagatga       780
     tgaaaaagtt tgatagtatt tacacaacga aatcaacggc gctccagatc atacaaagag       840
     gcaaaataga agaaataaaa ctcagcaact atacagaagt ggacgacttc tttgttgatt       900
     ttgaaaagtc aataaatgat tttaaagcag caggtggagt tttggaagaa gcagaaaaaa       960
     tgagatatct tataaaatca ttgccgccga actacagcta tattggtgat tttatagata      1020
     ttgtaccaga gcaacaaaga acagttgaat atgtaaaaag caaaataaaa gagaaaaatt      1080
     tcaacaaaag cgagacgtct aaaagatcaa gcgtgagtac attcaacgca aatgctaaag      1140
     gagtctgttt cagttgtggc aaatatggac accagaaaaa aaactgctat ctcaatcaag      1200
     gaaatcaagc aagccaaatt gctattcaaa ctggacaaaa cagaggtttt tctcacaacc      1260
     tgggaagagg aaaacgggga aatttccatg gcagatcacg aggctcatac agcagaggca      1320
     ggggatctca ccgaggatac gtgaacgaga cttcaggcaa cgaatcgagc gcagcatggt      1380
     ctgtcgagtt acagcatcct gcagctaatg gaccaagtgg atgtgacttc aaggacccaa      1440
     gcgagaatgc ttatcaatta aagtggatct tggacagcgg ctgtacggac catataatca      1500
     aaagcgacaa atatttcgtg agttatcagg atctaaaaat tgctgtcgac gttaagctgc      1560
     cagatggcaa aactttaaaa gctaccaaaa ttggtaatat caaactaact tttaaaacct      1620
     actataaaaa caaaactgta gagttaaaaa atgtttacta tgtaaatgga attcaggaga      1680
     atttattaag cgtatcaaga ataacgaaaa acaatatcat tgttgcaaaa aacagtaatg      1740
     caaaaatata tgatcagcat aatgaattag tagtcgtagc taataaagta aacaacttgt      1800
     atgtgataaa aggtattgca aaagaaactg gtagtattaa agaagtctat acaaatgtgt      1860
     taaaactaac aaataaagaa aaatggcata gggcacttgg ccatataaac tttaaatatt      1920
     tagataaatt agtttcggaa aaattattag aaggtttgcc agataagcta gaaaaaactg      1980
     agatgaagtg tgcgaactgc ttacagtcta aaatgtccaa taaaccattt gaaaacaata      2040
     gaataaaatc taaagaaatt ctcgaaacaa ttcatacaga cttaaatgga ccgcatacta      2100
     caggctatgg tggagaaaaa tattttctaa cattcgtaga tgattatagt aagtgcacta      2160
     gactttattg tatcaaaaat aaatcagaca cggtaaattg tttcaaagat tatattaact      2220
     tcgtagaaaa taaatttaac aaatgtgtga aaaaattaca gtgtgacaac ggaaaggagt      2280
     atttaaacaa agacatttac actttcaagg cgagactagt agttcgaggt tttcaacaaa      2340
     aagaggatat tgataatgta tattcgccag taggaaaaat gcaaacttta aaaacactat      2400
     tatcatacag ctgtgtaaac aatttatata tagaacaaat ggacgtagaa acagctttcc      2460
     taaatggcaa agtaaaaacc gaagtctata taaacatgcc gctagggtat gaaatgagtg      2520
     aagacaaagt atataaatta caaaaggcac tgtacggtct tagagaaagc ccaagagctt      2580
     ggtatgatac gataaatgaa ttcttaacag gcctaggatt tataagaagt aagtacgatt      2640
     attgtttata tgtagatatt gcaaaaaagg atccaattca cttactagtt tttgtagatg      2700
     acttgttaat ttgttgcaaa aatttttcca aaatcgaaga agtaaaagct agtttaaaga      2760
     aaaggttctc tatgaaagac ttaggcaaaa tttcaagcta tattggcata gatgtagact      2820
     ataataatga tagaactaaa atgacactat gtcaaacaaa atatatagag tctttagcgg      2880
     aaaaatacat gttagaaaat tcaagattat acgatacacc catggaaaca aatttaaagt      2940
     tagaacaagc atctgtctca actgaacata taaaatatag aaacttaata ggagaattac      3000
     tctacataag tacaggcaca agaccggaca taacatatag tgtgaattat ctcagcagat      3060
     tccaaaactg ttataacgaa actcatttta aatatgcttt aagagtattg aaatatttat      3120
     ataggacaaa agacttaaaa ctgacttatt gtgataattt aaataatgat attctagact      3180
     gtatggtaga ttctgatttc gcaggagatt gtattgatag aaaatcaaca acgggttttg      3240
     ttataaggtt ccaaggaaac ccaatcttct ggaagacaag aaaacaaaat tcaattgtaa      3300
     aatgttcaac ttttgctgaa tatactgcta tgtcagaagc tgtaactgaa atattattta      3360
     ctagaaattt attaatggat tcatttaaag aaaaattcag tcaacccata aaaatttacg      3420
     aacagataat aggagcaatc gctatagcta aattcgggaa ctttacaaaa aattcgaaac      3480
     acattgaagt tcagtatcac tacataaatg agagctataa taaaggctta atcgatattg      3540
     taaaagtaga ttcagataaa aatttagcag atatattaac caaaagccta tgtaaaacta      3600
     aattttttaa taatagacaa tcgctaaaac tattgtaaca acttgtaaaa tattataagt      3660
     caaactgtga caaagctaat ggtaatcaaa tgaagtacaa atgaagtaaa aaaaggtatt      3720
     ctagattata aatttaagga ggcg                                             3744
//
ID   Copia-1_DAn-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   AAPP01018733;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DAn_;
KW   Copia-1_DAn-LTR; Copia-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-214
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018733; Positions   33008   33221.
XX
SQ   Sequence 214 BP; 76 A; 27 C; 25 G; 86 T; 0 other;
     tgttgaattg tataaatata ataatctaga gttacttata tttaagctag tgtaaattag        60
     atattccgta tagtatataa tattataata agctattgtg aattagacct tatcgataac       120
     gattgtaatt aagcttcttc ttcttcttct tcatcaataa gagcttgtta gaatatgatt       180
     aacttttcct taatataaaa ctcgaatctc aaca                                   214
//
ID   Copia-1_DBi-I repbase;    DNA;    INV; 4999 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DBi_;
KW   Copia-1_DBi-LTR; Copia-1_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4999
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 819-819 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1983-2489] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           525..4553
FT                 /product="Copia-1_DBi-I_1p"
FT                 /translation="MDKGKRNIKPFDGDKYSIWKFRMRALLEEHDLLKVID
FT                 ETHEEMTDEIKKAERNAKGLIIEYLSDAFLSFTNSGSTAKQIFANLDAIYE
FT                 RRSLASQLSLRKKLLAMKLKGDTSLLNHFNSFDDLITELIASGAKLDDMDK
FT                 ISHLLLTLPPSYDGVITAIETLSEDNLTLAFVKTRLLDQEIKLKNISKDTS
FT                 IKVLQAVGKKEFKDIKFKNNPMQKLKKKVFKPSFKTKPKCFHCGKLGHLKK
FT                 DCFFLKRQPNQNLNENKRKEGQAQMATAATTQPEHSFAFMLRSETSNSKTN
FT                 EAEFILDSGASDHLINDTALFSEYDHLESNVPIEIAKRGEFIHATAKGVVN
FT                 ITSCGNQITLQNVLYCKDIPHNLLSVKKMQDAGMTIEFNPGGVKVTKDGKL
FT                 AFNGICEYNVPIIKFQLNSKVFSTKISNSTEYRLWHERLGHISVGKFLEIK
FT                 RNSLFEDTNILSNIDLNHELCEACINGKQSRLKFQKFKNKEYITRPLFVVH
FT                 SDVCGPITPSTIDNKNYYVVFIDQYTHYCVTYLITYKSDVYFCFKDFVAKS
FT                 EAHFNLKIVNLYIDNGREYLSNEMRDFCIEKGISYHLTVPHTPELNGVSER
FT                 MIRTITEKARSMINGAKLNKHFWGEAVLTATYLINRSPSRALQKINKTPFE
FT                 MWHNKKPTLKYLKIFGSTVYALNKVQKRKFDEKSIKAILVGYEPNGYKLWN
FT                 EESRKFMTARDVVVDEINMLKPRVLHGKDSDVRSNTVEQNNESLTKENEEL
FT                 DFPLVENNESVDSELNEQLNENSTYLENADPVVETGDKLKENEEEEEIRRS
FT                 ERIKSKPKLSYRFLERCLMNTQICLNDIPNTFDEIKFREDRSFWENAIQDE
FT                 LKSHFQNNTWTLAHKPDNKNIVDCKWVFSIKQDEFGNLVKYKARLVARGFT
FT                 QEYMTDYDETFAPVARISSFRFLLALSNQHDLIVHHMDVKTAFLNGTLKDE
FT                 IYMNVPKGLNQSYENKVCKLNKAIYGLKQAARCWFEVFESVLKDVGFQNLG
FT                 VDRCIYILDKGDISRNIYILLYVDDIVIATNKSDTMSEFKSYLHDKFQMTD
FT                 LREIRHFIGIKIDRTDGEICLSQSSYIQNVLRKFNMEDCNSVSTPLPNKLD
FT                 YTALQSEELCDAPCRNLIGCLMYIMLCTRPDLSTSISILSRYTNNNNKELW
FT                 QNLKRVLRYLKGTVNLKLRFKKETNFNNILTGYVDSDWAGNETDRRSTTGY
FT                 LFKMFESCLISWSTMKQKSVAASSTEAEYMALFEGVREALWLKSLINEINL
FT                 KLNGPIEIFEDNQGCISIANNPTCHKRTKHIDIKYHFTREQIEKKLICVKY
FT                 IPTDLQLADILTKPLPTARFISLRSQLGLSE"
XX
SQ   Sequence 4999 BP; 1818 A; 719 C; 948 G; 1514 T; 0 other;
     ataggttatg ggcccagaca cagttacaat gaataaatgg taacgctttg attgttacaa        60
     tataaaagtg tataaaagtg aaaaaagttt aaaagtgtgt gtgtgcatac gaatatgcaa       120
     ttctgcaaat gtacatacgg aatgtacatg aacaacaagg agtgatcact aaataataaa       180
     gggaatcttt aaaagaatta aataattttt ttttatttta ttatatattt ccacagcaaa       240
     aagcacacat acatttaacc aattcgccga gatcgttcta gagacgcttc gacgaatttg       300
     ccgcaaatct ccgcgtggtg gcaagacgga gttaccagac ggtgcttctg ttaagaaaaa       360
     ttgtggctgt gataaagttg ctggaaattg ttgctgtgaa aagttgctgt aagttgttgc       420
     tgtgaaaagt tgctagaaat tgttgcctta aaagattgct ggagactgtt tctgaggagt       480
     gttgctagtt tttttttgat ttgctgttgg gttttagaat cacaatggat aaagggaaaa       540
     ggaatatcaa accgtttgat ggtgataaat attcaatttg gaagtttaga atgagagcgt       600
     tgttagaaga gcatgatctt ctgaaggtta tagatgaaac gcatgaagaa atgactgatg       660
     agataaaaaa ggctgaacga aatgcaaaag gtttaataat agaatactta agtgatgcgt       720
     ttctatcttt cactaatagt gggagcactg ctaaacagat ttttgcaaac ttagatgcaa       780
     tttacgagag aagaagcttg gcatcacaac tatctctgcg aaagaaactt ttagccatga       840
     aattaaaagg tgacacttca ctcctcaatc attttaattc cttcgacgat ctcattactg       900
     aacttatcgc atcaggagca aaattagatg acatggataa aatatcccat ttacttctaa       960
     ctcttccacc tagttatgat ggagttataa cggcaataga gactctatcg gaagataatt      1020
     tgacattagc ctttgttaaa acacgacttc ttgaccaaga aataaagctt aagaatatta      1080
     gtaaggatac tagtattaaa gtcttgcaag cagtaggtaa aaaggagttc aaagatatta      1140
     aatttaaaaa taatccaatg cagaagttga agaaaaaagt gttcaagcca agtttcaaaa      1200
     cgaaaccaaa atgttttcat tgcggtaagc taggtcattt aaagaaggat tgtttctttt      1260
     tgaaaaggca gccaaatcag aatctgaatg aaaataaaag aaaggaaggg caggctcaga      1320
     tggcaacagc agcaacaacc caaccagagc atagttttgc ctttatgttg agaagtgaaa      1380
     cttccaactc aaagacaaac gaggctgagt ttatacttga ctcaggagca tcagaccacc      1440
     taataaatga cacagcattg ttctccgaat atgatcattt ggaatcaaat gtgcccatcg      1500
     aaattgccaa acgcggagag tttatccacg ctacagccaa aggagttgtg aatattacca      1560
     gctgcggaaa ccaaatcacc ttgcaaaacg ttttgtattg caaggatatt ccacacaacc      1620
     tactatcagt aaagaaaatg caggatgcag gcatgaccat tgaatttaat cctggaggtg      1680
     taaaagtaac aaaggatggt aaattggcct ttaatggaat ctgtgagtac aatgtaccta      1740
     ttataaaatt tcaattgaac agtaaagtat tttcgactaa aatttcaaat agtactgagt      1800
     atcgattatg gcatgaaaga ttaggtcaca taagcgtagg aaaatttttg gaaataaagc      1860
     gaaatagtct ttttgaagat actaatattt taagcaatat tgatttaaac catgaattat      1920
     gtgaggcttg tataaatggc aagcaatcta gattaaaatt tcaaaaattt aaaaataagg      1980
     aatatattac acgacctttg tttgttgtcc attccgatgt ttgtggccca ataacaccct      2040
     ccaccattga taataaaaac tactatgtag tttttattga tcagtataca cattactgtg      2100
     taacctattt aataacttat aagtcggatg tgtatttctg ttttaaggac tttgtagcga      2160
     agagcgaggc tcactttaat ttaaaaattg tgaatttata tatcgataat ggaagggaat      2220
     atctgtctaa tgaaatgcgt gatttctgta tcgaaaaagg catcagctat catttaacgg      2280
     ttcctcatac tccagagttg aatggtgtat cagaacggat gatccgaaca atcaccgaaa      2340
     aggctcgatc tatgatcaat ggtgctaaac tcaataaaca tttttggggt gaggctgttt      2400
     taacagcaac ttatttaatt aacaggtccc caagtagagc attgcaaaag atcaataaaa      2460
     caccatttga gatgtggcat aacaaaaagc caacgttaaa atatctgaag atttttggtt      2520
     cgacggtata tgcattgaat aaagtacaaa aaagaaagtt tgacgaaaag tcaattaaag      2580
     ctatacttgt tggatatgaa ccaaatggtt ataaactatg gaatgaggaa tcgaggaaat      2640
     ttatgacagc aagagatgtt gtggtggatg aaataaacat gctaaaacca agagttttac      2700
     atggaaaaga ttcggatgtt cgaagtaata ctgttgaaca aaataatgaa tctttaacta      2760
     aagaaaatga agagttggat tttcctttag tggaaaataa tgaatctgtt gattctgaat      2820
     taaatgaaca actcaatgaa aattccacat atcttgagaa tgccgatcca gtcgttgaaa      2880
     ctggtgataa attaaaagaa aatgaagagg aagaagaaat cagacgtagt gaaagaatta      2940
     aaagtaaacc caaattatca tatcgatttt tagaaagatg tctaatgaat actcaaatat      3000
     gcttaaatga tattcctaat acctttgatg agattaagtt tcgtgaggac agatctttct      3060
     gggagaatgc tatacaagat gaacttaagt ctcattttca aaataatacc tggactttag      3120
     cgcataagcc agataataag aacatagttg attgcaaatg ggtatttagt attaaacaag      3180
     atgaatttgg gaacttagta aagtacaaag caagacttgt agcgcggggt ttcactcaag      3240
     aatatatgac tgattacgat gagacatttg caccagttgc acgaatatcc agttttagat      3300
     ttttgttggc cctttcaaat caacatgatt taattgttca tcatatggat gtaaaaactg      3360
     cgtttttaaa tggaactcta aaagatgaaa tctacatgaa tgttccaaaa ggcctgaatc      3420
     agtcttatga gaataaagta tgtaagctta ataaagctat atatggcctt aagcaagctg      3480
     ctagatgttg gttcgaagtt tttgaaagtg tgttgaagga tgttggattt caaaacttag      3540
     gagttgatcg gtgtatttat attctggata agggagatat ttcgagaaat atatatatcc      3600
     tgttatatgt ggatgatata gtaattgcaa caaacaaatc agatacaatg tcagaattta      3660
     aatcttacct tcatgataag tttcaaatga ccgatttacg ggaaattaga cactttattg      3720
     gcataaaaat tgacagaacc gatggagaga tttgtcttag tcagtcgtca tatattcaga      3780
     atgtattgag aaaatttaat atggaagatt gtaattcagt tagtactccc ctcccaaaca      3840
     agttggacta tacggctctg caatcggaag aactatgtga tgcaccttgt agaaatttaa      3900
     ttggttgttt gatgtacata atgttatgta cacggcctga cttaagtact tcaataagta      3960
     ttctaagcag atatacaaac aacaacaata aggaactatg gcaaaacctt aaaagagttc      4020
     ttagatatct gaagggaact gttaatctca agcttagatt caagaaagaa actaatttta      4080
     ataatattct tacaggatat gtagattcag attgggctgg gaatgaaact gatagaagaa      4140
     gtaccacagg gtatttattt aaaatgtttg aaagttgttt aatttcctgg agtaccatga      4200
     aacaaaagtc agttgctgct tcatctactg aagctgaata catggcctta tttgaaggtg      4260
     taagagaagc tctttggctt aaatcactaa taaatgagat taacctaaaa ttaaatggtc      4320
     ctatagagat ttttgaagat aatcaaggtt gtataagtat tgcaaataac cctacttgcc      4380
     ataagagaac taagcacata gacattaaat atcattttac aagagagcaa attgaaaaga      4440
     aactaatttg tgtaaagtat attcccacag atttgcaact agctgatata ctgacgaagc      4500
     cattaccaac tgcgcggttt atttccctga gaagccagct gggactttca gaataaataa      4560
     actacgaact atgggaatga ttgctgaaaa ttcatcgcct ttagaagcca tatgtgaaat      4620
     ggatctcttt tttttatgtt attaatttca atttctcata cctactaagc cttaagtaat      4680
     tgaatcgaat tcatatactt gattattttt cctaaatgga tctcatgaag tacttgtcat      4740
     taattttatc ttaattaatt gaattaagtt tatgaactgt ttaatttcat ttatgtaaaa      4800
     accctactaa tgttaatttg atttttgatc tagttgggtt ttactgggtt tttcccaact      4860
     ccagtagcaa atgctagatc taaaaagaat tgaaccccca gaataagaat ataaaaaaaa      4920
     atgaagatat aaataaaaat taaagcacaa actcatgtca agaatcgaag tgataatcaa      4980
     tgtaactttt gaggcggcg                                                   4999
//
ID   Copia-1_DBi-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DBi_;
KW   Copia-1_DBi-I; Copia-1_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-250
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 820-820 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 250 BP; 63 A; 44 C; 40 G; 103 T; 0 other;
     tgttgaaatt tgcatcttca aatatgcaaa agtcacatta ttaattatgc acaccaaaat        60
     gtgttcgttg ttgtcttgac atctatcacg cctgttcgtt gatctcttga cctatcgata       120
     ttctcgttca cttcctttct ggcattgaga gcgtgtggta cacctaaaat ctaattgggc       180
     gttattattt attcattggt ggttgtctgg ttaatactta attgtattac ttctttatta       240
     ttaaattaca                                                              250
//
ID   Copia-1_DBp-I repbase;    DNA;    INV; 3920 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DBp_;
KW   Copia-1_DBp-LTR; Copia-1_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3920
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 648-648 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..2263
FT                 /product="Copia-1_DBp-I_1p"
FT                 /translation="MNKINKMSSQYSIEKLDSDNYSSWAVQMKSLLVHSEL
FT                 WSIVCGREIKNESGTVAEQANFDNKDEKALASILLCIKPSQINYVKHCKSS
FT                 MEAWKKLASVHMPSGPARKIQLFKQLLYMKMSESDSVTVHLSNFNDVIEKL
FT                 QEIDQPVPEEMLVIILLSSLSDSYENFVIAMETRDSLPSLISLKIKLLEEG
FT                 ERRKVGDKMDNKAEQKIYSSRAEKEKPKHKKDMKNVECWNCGRYGHVSAKC
FT                 YSKQKNARSEKDNNSVSKREENKKSFSVFAAAASQSGLTKNIWCIDSGATA
FT                 HLCANKSLFVSIREHKEKIMLVGENYIEAEGIGTVKLFWQENIIELVDVLF
FT                 VQNLQCNFISVSRATNNGFEISFSKNSASVNNKNGETVLKANKQNDLFIFE
FT                 NKNKTAFAAKGKTNQVITWHNRFGHLNFESLKSMIRKELVYGLRGVTGSTN
FT                 DFVCETCAKSKICVKQFPKVAENRSNKVLGLIHTDVCGPMSTVSKGGARYF
FT                 ATFIDDKTRYVSVYMLKTKDQVFEKFKEFMLLAEKQTGQQIKAIRSDNGRE
FT                 YINGAFENFLVSNGIKRQLTVPHTPQQNGVAERANRTLVEMARSMMVHANA
FT                 NEYLWGEAIMTAMYLRNRSETSTLPDMTPYEAWFGKKPSVSHLKVFGTKAI
FT                 VLDKTMKRKFSQKGIEHILVGYSETAKAYRLFNPDTQTIKEARDVVFLEHD
FT                 ITKTEDISTVELAENGSVFGEEINGGP"
FT   CDS           2359..3876
FT                 /product="Copia-1_DBp-I_2p"
FT                 /translation="FVLEGQDDHVRSTICLTEYSQLQSTKTWSLVNLPPGE
FT                 RTIGCKWVFAVKGDQYGNVERFKARLVAKGCGQEYGINYTETFSPVARYSS
FT                 IRLVIALAVENKMFMHQMDVSAAYLNSDLQDVVYMRQPEGFVDTAYPKRVL
FT                 RLHKSLYGLKQSGREWNQKLDCTLQRIGFVQCPSEPCIYTKNNGEKFNLIV
FT                 VYVDDLIIACSRKEDLVDIKLQIAREFEVVDGGELKHFLGMEIERDGETGS
FT                 VAIGHKQYIDGLLRDYGMEDCKPNATPLEVGYQNLCILEDCPRANQKQYQS
FT                 LIGSLLYLAMTTRPDIVHCVAKLAQRCSDPHKEHEVAAKRVLRYLRGTSGL
FT                 KLHFVRTGVPVHCFVDADWAGDCTDRKSFSGWAFFMAGAAFSWESKKQSII
FT                 ALSSTEAEYVALSTAAKEAAYVLKLISEMGFETAPTLMIYSDNQSAQCLAK
FT                 NASFHARSKHIDIKYHFIRDLYKKKVIDIEYVPTENMISDVLTKALCKVKH
FT                 TKCITSLGLN"
XX
SQ   Sequence 3920 BP; 1257 A; 690 C; 999 G; 973 T; 1 other;
     ggttatgggc ccaggccagc aagaaaacta ctgcgtaata gtcgaaaaga ttataagata        60
     attagagatt cggtggtgtt taatgaacaa gataaacaag atgagttcgc aatactcaat       120
     agaaaaactt gatagtgaca attatagttc gtgggcagtg caaatgaaaa gtctgctggt       180
     acactcagaa ctttggtcaa ttgtgtgtgg tcgtgaaatt aaaaacgaaa gtggaacggt       240
     tgcagagcag gcaaactttg ataacaagga tgaaaaggcc ctcgcgagta ttttgttgtg       300
     tataaagccg tcccagatta actatgttaa acactgcaaa tcatcgatgg aagcttggaa       360
     aaagctggct agtgttcaca tgcctagtgg accagcgcgt aaaatacagt tgtttaaaca       420
     gttgctgtat atgaagatgt cagagtcaga cagtgtcaca gtgcatttga gtaatttcaa       480
     tgacgtcatc gagaaattac aagagatcga tcaaccagtc ccagaagaaa tgcttgtaat       540
     aattttgttg tccagcctat ctgattcgta cgaaaatttc gtaattgcta tggagacgcg       600
     tgattctttg ccttccttga tttctctaaa aattaagttg ctggaagagg gagaacgacg       660
     aaaagtggga gacaaaatgg acaataaagc ggaacagaaa atctactcgt cgcgtgccga       720
     aaaggaaaag cccaagcata agaaagacat gaaaaatgtg gaatgttgga actgcggtcg       780
     ttacggacat gtttcggcaa agtgctactc aaaacagaaa aacgcaagat cagaaaagga       840
     taacaatagt gtgagcaaac gcgaggagaa caagaagtcg ttctcggttt tcgctgccgc       900
     agcgagccaa agtggactaa cgaagaatat ttggtgcatt gacagtgggg caacagccca       960
     tttatgtgca aacaaatcgt tatttgtttc aattcgtgag cataaggaaa aaataatgct      1020
     ggttggagaa aattacattg aggctgaagg cattggaaca gtaaaactgt tttggcaaga      1080
     aaacattatt gaattggttg atgtattgtt cgtacaaaac cttcagtgta attttatttc      1140
     ggtgtcgaga gcaactaata acgggttcga aataagtttt tcgaaaaata gtgctagtgt      1200
     caataataag aacggcgaaa cggtattaaa agcgaacaaa cagaatgact tgtttatttt      1260
     cgaaaataaa aacaaaacgg cttttgctgc aaaaggaaaa acaaatcaag taataacgtg      1320
     gcacaataga ttcggacatt taaatttcga aagtttaaaa tccatgattc gaaaagaact      1380
     ggtgtatggt ctacgcggag taaccggtag cacgaatgac tttgtttgcg agacttgtgc      1440
     gaaaagcaag atatgcgtga aacaatttcc aaaagtggcg gaaaatcgtt cgaacaaagt      1500
     gttggggctg atccatacgg acgtgtgcgg tcctatgagt acagtttcca aaggtggagc      1560
     gcgttatttt gctacattca tagacgacaa gacgcgttat gtatcggtgt atatgcttaa      1620
     aacaaaagac caagtttttg agaaattcaa agaatttatg ttgttggctg agaagcaaac      1680
     tgggcagcag attaaagcta tacggagcga taatggtaga gagtacatta atggmgcatt      1740
     cgaaaacttc ctggtaagca atgggattaa gaggcagctc accgttcccc atactccaca      1800
     gcaaaacggc gtggctgagc gtgccaatcg gacgctagtg gaaatggcaa ggagcatgat      1860
     ggttcacgct aatgcgaacg agtacctgtg gggggaagcg ataatgactg cgatgtattt      1920
     gaggaaccga tcagaaacgt ctacattgcc agacatgact ccatacgaag catggtttgg      1980
     gaaaaagccc agcgtatccc atcttaaggt gtttggtaca aaggcaattg tgctagacaa      2040
     gacaatgaaa agaaaatttt ctcagaaagg aatagagcat atcctggttg ggtattcaga      2100
     aactgccaaa gcgtatagac tcttcaatcc tgatacgcaa actatcaagg aagccagaga      2160
     tgtggtgttc cttgagcacg atataacaaa aaccgaggat atatcgaccg tagaattggc      2220
     agaaaacgga agcgtttttg gtgaggagat aaatggcggt ccatgaagtg acggaacagt      2280
     cgggagccga agatggtgaa gacgagttgg ttgatagcgt cgacagagtt cagcgaggcc      2340
     caggtaggcc taagataatt cgtactggaa ggccaggacg accacgtaag gagtacaata      2400
     tgcttaacgg agtattctca actacagtcc accaagacat ggagtcttgt aaatcttcct      2460
     cctggcgaga gaactattgg atgcaaatgg gtgtttgcgg ttaaaggaga ccagtacggc      2520
     aacgtggaac ggttcaaggc tcgcttagtc gcaaaaggtt gtggacagga gtacggcata      2580
     aactacacag aaacattttc cccagtggct cggtattctt ccatccgatt ggtgattgca      2640
     ctggctgtcg agaacaaaat gtttatgcat caaatggacg tctcagctgc gtatctcaat      2700
     agcgacctac aagatgtagt ctacatgcgg caaccggaag ggttcgtgga cacagcgtat      2760
     ccaaaaaggg tgttgaggtt gcacaagtct ttatacggtc tgaagcagag tgggcgtgaa      2820
     tggaaccaga aattggactg tactcttcag cgtattggtt ttgtacaatg tcccagtgag      2880
     ccatgcattt ataccaagaa caacggcgaa aaatttaact taattgttgt atatgtcgat      2940
     gatctaatta ttgcctgttc cagaaaagaa gaccttgtcg acataaaact tcaaatcgca      3000
     cgggaattcg aagtagtaga tggcggagag ctgaaacatt ttttaggcat ggagatcgag      3060
     cgggatggag agacgggcag tgtggcaatt ggccacaagc agtatatcga cgggctgtta      3120
     cgagattatg gcatggaaga ctgtaagccg aatgcaacgc ctttggaggt tggttatcag      3180
     aacctatgta ttttggaaga ctgtccacga gccaaccaga agcagtatca atcgcttatt      3240
     ggatcactgc tgtacctagc aatgactacg aggccggaca ttgttcattg tgtggcaaag      3300
     ttggctcaga ggtgcagtga cccccataag gaacatgagg tggccgctaa acgcgtcctt      3360
     cgttacctaa gaggaacttc gggcttgaag ctgcactttg ttcgaactgg tgtgcctgtt      3420
     cactgctttg tggatgcaga ctgggcaggt gactgtactg accgcaaatc gttcagtggt      3480
     tgggcgttct ttatggctgg agcagcgttt tcgtgggagt cgaaaaagca gagcatcata      3540
     gcactcagta gcacggaggc tgagtatgtg gcgctttcaa cagcagctaa ggaggctgct      3600
     tacgtgctga agctgatatc tgagatgggt ttcgagacgg cgccaacatt gatgatctac      3660
     agtgacaacc agagcgccca atgtttagcg aagaatgcga gttttcatgc tagaagtaaa      3720
     catatagata tcaagtatca tttcataaga gatttatata agaagaaagt tattgatatt      3780
     gaatatgttc caaccgaaaa tatgatttca gatgttctaa ctaaagctct atgtaaagtt      3840
     aagcacacaa aatgtattac ttcactaggg ttaaactaaa aaagaatctt ttgaattaga      3900
     tataccgcgg tgagaaggag                                                  3920
//
ID   Copia-1_DBp-LTR repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DBp_;
KW   Copia-1_DBp-LTR; Copia-1_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-152
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 649-649 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 152 BP; 44 A; 29 C; 21 G; 58 T; 0 other;
     tgttgaaaat atttgtatat gcaccactgt atatcttatt cctcttatgt tatacactaa        60
     agtaacgagt aacgaattat cattcctctt taagttctgg ttctgcctgc gtgcagcatt       120
     ttttagtctc taataaatcg tcaaaccgaa ta                                     152
//
ID   Copia-1_DEl-I repbase;    DNA;    INV; 4124 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DEl_;
KW   Copia-1_DEl-LTR; Copia-1_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4124
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 508-508 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1594-1956] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1522..4095
FT                 /product="Copia-1_DEl-I_1p"
FT                 /translation="MRKESMGGCKYYVTFIDDYSRYCEVLKVLKAFVDYKA
FT                 AAENLTGKKIKMLQSDNGTEYCNREFDAYLAWNGIKRRLSAPYTPQQNGLA
FT                 ERQNRTLVEMARCMMRQAGAPATFWAEAVNAACYIRNRCPAAGLSGGIPYT
FT                 YWTKKIATVAHLRAFALEKGINKGKFDPRSVECILVGYAATSKAYRLYVPE
FT                 RRKVIISNGVKFLSLPGFSTHFEEFYTEPNSEEISIEMTSTKIKQDDLEAD
FT                 PSVDSPQEPTISAQRRGRGRLKTLRSGFRGRPRKIYQQPNVEHSNEDDAES
FT                 EELQSDEPYEECEIANALFDDPVNIAEAKSSDDADNWIKAIEDEFMAHLKN
FT                 KTWDIVEKPDDRKTIGNRMVFRTKDTGGDEFKKKVRLVAKGYAQRPGEDFH
FT                 ETYSPVVRFSTIRLLMALSVEACMEVHQMDVVTAYLNGELEEKIFMEIPEG
FT                 FRDFVTGMATGAPIGSHGRPLDRNSTETAKNWMHSMSRCQKPVCVLRKALY
FT                 GLRQSGLRWYQKLTAKLVDSGLIATKEDPCLFVKRRGEKILLVTIYVDDLL
FT                 LASNHTAWIDETKSNLTEAFEMKDIGTVNTCLGMEFLQNVKENWIFISQEQ
FT                 YINKILSRFEMSECKAALTPIEAKSNLKRPDVADEAEMKKYPYQNLIGALM
FT                 FLSVSTRPDITFAVNFLSQFNANYNGEHWKAAKRVLRYLSGTKGLGLLYLP
FT                 SKENLYGVADADWGANLSDRRSYSGQAFVLSGAAISWEARKQRTVALSSTE
FT                 SEYLAMSEAVKESIYLRSLLTSIGRGCDSIRIFNDNQSAQKLAKGFGYNPR
FT                 TKHIDVRHHYIQEKQRSGDIQIEYLPTELMPADVLTKGLSHNKHKTCLRSL
FT                 GVTEI"
XX
SQ   Sequence 4124 BP; 1363 A; 852 C; 1039 G; 870 T; 0 other;
     ggttatgggc ccagaccata tacccgcgca ataaaataac acttcacctg taggccgtca        60
     tagttagatt tggtcgcgaa aaatgtccgg cgcgtttata aaaattgagc cgctttgtgc       120
     ggataactat gacacgtgga aagttcaaat gcgggcagtg ctcgtgaaaa acgacctgtg       180
     gcaatatgtg gacggtacga aggagtgccc tagtggaagt ggaagcacat cggctgctga       240
     ctccgccgta tggaaaacgt acgacgaaaa agcgcgtgca gatatcttac tatcggtcag       300
     cccctcagaa ttggctttga tcgagggatg taatacagct aaacgctgtt ggatgaaact       360
     gcaggaaatt tttatgacga gaggaccagt gcgaaaagca gctcttctaa agaagctaat       420
     attatcgcgc ctgtgtgagg gcggcaatat acgagagcac ataaacgaaa catttgaagc       480
     cgtaaagaaa ttaagggaaa tcggcgtagc aatcggagac gacttattgg ccattatttt       540
     actctacagt ctgccagaca ccttcgaaac gtttagatgc gcgatggaag caagggatga       600
     cttaccacgc ccagaattct taagagtaaa aatataagag gaggccgaag ccagaaaaaa       660
     taggcacgtg ccagatgaac aaaacgcaat gttcgcgaaa cgtcgtaagg acaggagtgg       720
     aaagcaaact agaaacaaag agactagaaa atgctttaac tgtaacagag tcgggcacat       780
     atccaaaaac tgctggaata aaacgaatgg aaagggcgaa gagcccgatc atagagagaa       840
     agcaaagaga gcagaggaat cgacattcgc atgccaggca aatttctgcg cgaataaagc       900
     tggcgcttgg tgcttagaca gcggctgtac agcgcacatg agttcagaca cgaaactatt       960
     tgcaaatata aaagaaataa agaaaacttt acatttggcc aacgacgaga caacaactat      1020
     aagtggcgtg ggtgaaataa aaatcgcagt cgacgacaaa ggagagaaga agaataatta      1080
     ctctcacaga cgtgcattac gttcccgatc tcaggcagag cttgctgtca atatcaaaga      1140
     ttacggataa gggatacgag gtacacttca ggaaagacga ggctctaatc gtgaaaggta      1200
     agaacgaaat ttggttacgc gcacaaaggc gcggaaatct gtattatttg gacagcgtag      1260
     agcatcaatc aaataacatc gagaaaatcc acttgagcaa catcaacgga cggcattatc      1320
     gaatgggaca cttgaacgaa cgagatctaa agaacatggc aaatgaaggt aaagtgcacg      1380
     gaatgaatat aaaagaaaac gaaaaaattc ggagtgcgaa atctgtgtga gcgaaaaaca      1440
     agtggcgaat tcgtacaaaa gttcccctgg aagcagaaca actgaactac tggaaatcgt      1500
     acacagcgat gtgtgcgggc catgcgaaaa gaatccatgg gcggatgcaa gtattacgta      1560
     acatttattg acgattactc tagatattgc gaagttttga aagtattgaa agctttcgtc      1620
     gattataagg ccgccgctga aaatttgact ggaaagaaaa taaagatgct acaatctgac      1680
     aacggaacgg aatactgtaa cagggaattt gacgcctacc tagcatggaa cgggattaaa      1740
     cgaagactaa gtgcaccata taccccccaa caaaacgggc tagcagaaag gcaaaacagg      1800
     acgctagtcg agatggccag atgcatgatg aggcaagcag gagcacctgc aactttttgg      1860
     gctgaagccg tgaacgcagc gtgctacata cgcaaccgat gtccagcagc aggcttgtca      1920
     ggaggtattc cctatacgta ctggacgaag aaaattgcga cagtggcaca cctgagagca      1980
     tttgcgctcg aaaaaggcat caacaaggga aaatttgatc ccagatcggt tgaatgcatt      2040
     ttggtaggat atgcagctac ttcaaaggca tatcgacttt atgtcccgga aaggcgaaaa      2100
     gtaataattt ctaatggcgt aaaatttctg agtcttccgg gtttcagtac ccattttgag      2160
     gaattttata cggagcccaa ctcagaagag attagcattg agatgacgag cacgaaaatt      2220
     aaacaagatg atcttgaagc ggatccgtcg gtggattctc cacaagaacc cactatttcg      2280
     gcgcaacgcc gtggcagagg gcgcttgaaa acacttcgaa gcggattccg tggcaggcca      2340
     cgaaaaattt atcaacaacc gaatgtagaa cacagcaatg aagacgacgc ggagagcgag      2400
     gaactacaaa gcgatgagcc ttacgaagag tgtgaaatag ccaacgcact atttgacgat      2460
     cctgtaaata tcgccgaagc gaaaagctct gacgatgccg ataactggat aaaggcgatc      2520
     gaagacgaat ttatggcgca tctgaaaaat aagacatggg acatcgtgga gaaaccagat      2580
     gaccgaaaga cgattggcaa cagaatggtt tttcgcacaa aggacactgg aggcgatgag      2640
     ttcaagaaaa aggtgcgttt ggtggctaaa ggttacgcac agagaccggg tgaggatttc      2700
     catgagacat actcacccgt agttcgattc agtacgatcc gactcctcat ggcattatcc      2760
     gtggaagcgt gtatggaagt tcaccaaatg gatgttgtga cagcttactt aaatggagag      2820
     ctcgaggaga aaatctttat ggaaattccg gagggatttc gcgatttcgt caccggaatg      2880
     gcaactggcg cgcctattgg atcacacgga agacctctag atcgaaattc caccgaaaca      2940
     gcgaaaaact ggatgcacag catgagcaga tgtcagaagc ctgtatgtgt gcttcgaaag      3000
     gcgttatatg gactacgaca gtccggacta agatggtatc aaaagctaac tgcgaagttg      3060
     gtagacagtg gactgatagc gaccaaggaa gatccatgct tattcgtgaa acggcgagga      3120
     gagaagattt tactggtaac catttacgtc gacgaccttc ttcttgcctc gaaccatacc      3180
     gcatggatag acgaaaccaa atcaaatctt acggaagcgt tcgaaatgaa ggatataggc      3240
     actgttaata cctgcctagg tatggagttc ctgcaaaacg tgaaggagaa ctggatattt      3300
     atctcgcagg agcagtatat caacaaaatc ttaagcagat tcgagatgtc ggaatgcaaa      3360
     gcagcgttga cccccattga agcgaagagc aacctcaaac gccccgacgt agctgatgaa      3420
     gcggaaatga agaaatatcc ttatcaaaac ttaatcggtg ctttaatgtt tctttcagtt      3480
     tccacccgcc cagacattac gtttgctgtc aattttctga gccagttcaa cgcgaattac      3540
     aatggggaac actggaaagc agcgaaacgc gtcctacggt atctgtctgg gacaaaagga      3600
     ctggggctat tataccttcc gagcaaggaa aatctgtacg gtgtggccga cgccgactgg      3660
     ggagcaaacc ttagcgacag acgctcctac tctggacaag cgtttgtgtt gtctggcgca      3720
     gctataagtt gggaagcccg aaaacagcga actgtggcac tttcgagcac ggaatcggag      3780
     tatctggcta tgtccgaagc agtcaaagag tccatatact taaggagtct cttaaccagc      3840
     attgggagag gttgcgactc gatccgtata ttcaacgaca accaaagcgc ccaaaaatta      3900
     gctaaaggat ttggttacaa cccgcgcacc aaacacatcg acgtgcgcca ccactacatc      3960
     caagagaagc agcgaagtgg tgacatccaa atcgagtact tgccgaccga acttatgcca      4020
     gcagatgtat tgactaaggg tcttagccac aataagcaca aaacctgctt aagatcttta      4080
     ggcgtcactg aaatttaaaa ttaacttgta actttgagag ggcg                       4124
//
ID   Copia-1_DEl-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DEl_;
KW   Copia-1_DEl-I; Copia-1_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-305
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 509-509 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 305 BP; 107 A; 58 C; 45 G; 95 T; 0 other;
     tgttgaaact atgtaatgta aatcaaagta acaaatgtaa atgatatgat cagttctgta        60
     tgcccaatat cataaagaga tgagaatcat atgtaaaagc ttaaaagtaa cggcttatct       120
     ctcttccctc atttataacc taaagaagtg tagataaacg cgactctacc cctttttata       180
     agtcagtcag cttcaagccg cagatcacgc gagttatgta tcaaccgtca aaatatactt       240
     agataataaa agagcattta ttctttaacc tacaagtaca cgtgtttctt tcattcgctg       300
     cttca                                                                   305
//
ID   Copia-1_Deu-I repbase;    DNA;    INV; 3931 BP.
XX
AC   AFPQ01004347;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_Deu_;
KW   Copia-1_Deu-LTR; Copia-1_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-3931
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004347; Positions   41091   37161.
XX
CC   'TCTTC' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..1584
FT                 /product="Copia-1_Deu-I_1p"
FT                 /translation="MNMSGHGLCSIEKLDEENYAVWSVQMKSILVQSDLWP
FT                 IVCGRTVKNEGDSQEQNALFDTRDEKALASILLGVKSSQINFIKNCTSSKE
FT                 AWEKLMSVYQPRGPARKIALFKRLLRMSLLESTSVQSYISEFSDIVEKLNE
FT                 IGMNISEDMLTILLLTGLGKSFEISLVAIETREMLPSLSDLKIKIIEEGQR
FT                 QQVKSEVADSSVQQAFMSRAKNVYQKGNTKKKKKCYRCGREGHFIAQCKEE
FT                 LKNDKDTSTEKKRALAILANVKKTDNLSKSMWCLDSGATVHMCCDKSWFVE
FT                 MREHKEKIFLAGANFVLADGIGTVCVSVKSFTIELKNVLYAKELQTNFISV
FT                 AKAVENGYKVIFDNHKAVIRDKQNVDILKACRYGDLFMIDIKMKQCMYSNT
FT                 NSSAMWKWHYRFGHINLSSLTKMASGGMVNGLKTVNTKIDSNSNACETCAK
FT                 SKISVKPFPKKSESRSEEVLNLIHSDICGPMNKPSVGGARYFATFIDDHSR
FT                 YTAVYF"
FT   CDS           1774..2712
FT                 /product="Copia-1_Deu-I_2p"
FT                 /translation="MELPKEQIRTLVEMARSMLIHSSADESLWAEAVQTAA
FT                 YLRNRSETKALCNMTPYEAWVGKKPYVSHLKVFGSKAIVLNKAHKKKFSQK
FT                 GNEYVMIGYSATAKAYRLFCPKSRKVIESRDVIFMENNVGGSPSDKMEMAL
FT                 FDDFVADNQQAQDNNDEQPAVSETRGPGRPRLVKTGKPGRPRKQYNCLNML
FT                 KAEDIHIPANLGEVNQSGMKQEWSASIQKEMDALEANNTWDLVDLPQDKRA
FT                 IGCKWVFGVKVDKEGYVERFKSRLVAKGCAQRYGVDFWETFSPVVRYPSVR
FT                 MIMALAVEKKLHLHQMDVSTA"
XX
SQ   Sequence 3931 BP; 1310 A; 653 C; 989 G; 979 T; 0 other;
     ggttatgggc ccagggctcg tgtggataaa aaactgtgac attaatttaa attactgtgt        60
     gtgattgcga aaaaattaat gaacatgagt ggacacgggt tatgttccat cgaaaagttg       120
     gatgaggaaa attacgcggt atggtcggta cagatgaaaa gcattctggt gcaaagtgat       180
     ctgtggccaa ttgtgtgcgg gagaactgtg aaaaatgaag gggatagcca agaacaaaac       240
     gcattgtttg atacacggga cgaaaaggca ttagcaagca tattgctggg tgtaaagtcg       300
     tcgcaaatta acttcataaa gaattgcacg tcgtcaaaag aggcatggga gaaattaatg       360
     agtgtgtacc agccgcgcgg accagctaga aaaatagcat tgtttaaaag attgctgcga       420
     atgagcttgc tagaaagtac aagtgtgcaa agctatataa gtgaattctc ggacatagtg       480
     gaaaagttaa acgaaatagg aatgaacata agtgaagaca tgcttacaat tttgttgcta       540
     accggcttag gcaaatcatt tgaaatttcg ttagtggcaa tcgagacgcg agaaatgttg       600
     ccgtccttat ctgacttgaa aataaaaatt attgaagaag gacagagaca acaagtgaaa       660
     agtgaagttg cggacagcag tgtgcagcaa gcatttatgt cgcgcgcgaa gaatgtatac       720
     caaaagggta atacaaaaaa gaaaaagaag tgctataggt gcggacgcga aggtcatttt       780
     atagctcagt gcaaagaaga attaaaaaat gacaaagaca caagcactga gaagaagaga       840
     gcccttgcta ttctggcgaa tgtgaagaaa actgacaatt tgagcaaatc aatgtggtgt       900
     ctggacagtg gcgcgactgt acacatgtgt tgtgataagt cgtggttcgt agaaatgaga       960
     gagcacaaag aaaaaatatt tcttgctggc gccaattttg tgttggccga tggcattggc      1020
     actgtgtgtg ttagtgtaaa aagtttcaca atagaactga aaaatgtgtt gtatgcaaaa      1080
     gagttacaga caaactttat atcggtggct aaagcagttg aaaatggata taaagtcatt      1140
     tttgataacc acaaagcagt gattagggat aaacaaaatg tggacatatt gaaagcgtgc      1200
     agatatggtg acttgtttat gattgacata aaaatgaagc agtgtatgta ttctaataca      1260
     aacagcagtg caatgtggaa atggcattat cgttttggcc atataaattt gtcaagctta      1320
     actaaaatgg cgagtggtgg aatggtgaat ggtttaaaaa cagttaatac aaaaattgac      1380
     tcaaacagca atgcgtgtga gacttgcgcc aaaagtaaaa ttagtgtgaa accatttcca      1440
     aagaaatctg aaagtcgttc agaagaagtg ttgaatttga ttcattcgga catatgtgga      1500
     ccaatgaaca aaccgtctgt cgggggtgcg cgttattttg caacgttcat tgacgatcac      1560
     tcgcgttata cagctgttta tttttaaaat ctcgtgatga aatactaagc gcattcaaag      1620
     actatgttgt gtttgcagaa aaacaacgcg gaaagaaagt aaaagcaatt cgaagcgata      1680
     acgggcgcga gtacgtgagc cacgcatttg gacaatttct tactgaaaac ggtatagtaa      1740
     gacagctgac agtaccctat actccacagc aaaatggagt tgccgaaaga gcaaatacgc      1800
     actctggtag aaatggccag gagtatgttg attcattcaa gcgcagatga gagcctgtgg      1860
     gctgaggcag tacagactgc agcatatctg cgcaataggt cagaaacaaa agcgttgtgc      1920
     aacatgacac catatgaggc gtgggttggc aagaaaccgt atgtgtcgca cctcaaggtt      1980
     tttggctcaa aggcaatcgt attgaataaa gcccataaaa agaagtttag ccaaaaaggt      2040
     aatgaatacg ttatgattgg ctattcagca acggcaaaag catatcgttt gttttgtcct      2100
     aaatcaagga aagttattga aagcagagat gttattttca tggaaaataa tgtaggtgga      2160
     tctccaagcg ataaaatgga aatggcattg tttgatgatt ttgtagcaga taatcagcag      2220
     gcacaagaca acaatgatga gcagcctgct gtatctgaaa cccgtggacc agggcgtcca      2280
     agactcgtta aaactggcaa gccggggcga ccacgtaagc aatacaactg tctgaatatg      2340
     ctgaaggcag aggatataca cattccagca aatttgggtg aggttaatca gtcaggaatg      2400
     aagcaggaat ggtcagcatc gattcagaag gagatggatg cgctagaggc caataacacg      2460
     tgggatctag tggatctgcc acaagataaa agggctatag gctgcaagtg ggtatttggc      2520
     gtaaaggttg acaaggaagg ctatgtagag cgctttaagt caagactagt tgccaaagga      2580
     tgtgctcagc gctatggtgt tgacttctgg gaaacattct cacctgtggt cagatacccg      2640
     tccgttagaa tgatcatggc attggcggtt gagaagaagc tgcatttgca tcagatggac      2700
     gtatctactg cttaattgaa cagcgagcta tcggaggacg tgtacatgcg gcaaccagat      2760
     gggttcgtaa gcgaagagtt tcccgagaag gtcctaaagc taaagaagtc tctgtacggg      2820
     cttaaacaaa gcggcagaga atggaatact aagctcgacg cagtattgaa aaaacttggt      2880
     tttacaccgt gtgtcagcga gccgtgcgta tatgtacgca atggacaagg tagtataaat      2940
     ataatagcag tttatgttga cgatctttta cttgccagct caaataagat gaacttttgg      3000
     gcatcaaagc atcaatcgct aataagtttg atgttgtgga tggcggccag ctcaatcact      3060
     ttttgggcat cgaagttgag cgcgatggcg aaactggcag catagctatc ggccataagc      3120
     agtatgtcga gcagatgctt catgcctggg gcatgtcaac atgcaaacct gtagctacac      3180
     cactggaggc gggtcatcaa gtcaaatgtg atgacgccaa atgcaaggcc attgacgaga      3240
     aaggctatca atcgttaata ggcaccctga tgtatttggc tataacaact aggccagaca      3300
     tactacactc ggtagtgaaa ctggcgcagc gcaacgccaa tcctcacaag gagcatgaag      3360
     tttcggcaaa gcgcgtgctg agatatctta aaggcacggc taacatgaag cttcactatc      3420
     aggctactgg aaaggagata catggatacg tggacgctga ctgggctaac gatactacag      3480
     atcgcaaatc gtatagcggg tacgtcttca ttgctgctgg cggggcaatt tcgtgggaat      3540
     ccaaaaagca aagttcggtg gcacttagca gcaccgaagc cgagtacatt gccttatcca      3600
     cgggcagcta gagaggcgat atatctgaag aactattgta tgaaatgggt ttcttagaaa      3660
     ccaagtccgt tttgttgtat tgcgataatc aaagcgcaca atgtttagct aagaatccga      3720
     ttttgcataa acgtagtaaa catattgata ttaagtttca tcatgtacga gagttatata      3780
     ctaaaaatga aatagatgtt aagtatataa gtactaatga tatggtctca gatgtgttaa      3840
     ctaaaaactt gcaaaagaac aaacatgtaa aatgtattaa tgaaatgaat tgttattaat      3900
     atgtataaag tatatgattg ttgagaagga g                                     3931
//
ID   Copia-1_Deu-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   AFPQ01004347;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_Deu_;
KW   Copia-1_Deu-I; Copia-1_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-240
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004347; Positions   37160   36921.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 240 BP; 74 A; 48 C; 29 G; 89 T; 0 other;
     tgttgaaata tgatttgtcg ggcaacaatc gatatacaaa ctttggtcac tcttaagcta        60
     cccttttatt gctttatgcg atattttctt atgtattctt tcttcttgta tctgcttttg       120
     aagacgtcac cacatattgt cgcgcagcct tattaaacat ataaacttat aagttactca       180
     tgttaaacat acagcttctt atccgagttc cacaataaat aaaatatcat ataaccaaca       240
//
ID   Copia-1_DFi-I repbase;    DNA;    INV; 3808 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.06, Created)
DT   23-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DFi_;
KW   Copia-1_DFi-LTR; Copia-1_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3808
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 887-887 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1384-1914] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1123..3681
FT                 /product="Copia-1_DFi-I_1p"
FT                 /translation="MKNAQVVQDGECIVKANKIGNLYLFEGGRSKCFAMKA
FT                 VDGVLLHKRYGHINFSSMKELVSKGMVLGVENISLPQNINCKTCMVSKIHV
FT                 QRFPTSTSNRAKELLELIHADVCGPFPTQSLGGSKYFLTFIDDKSRRIFVY
FT                 FLRGKNEVLSKFIEFKSLVERQTGKKLKCLRSDNGGEFVNKQFDQFIRHHG
FT                 IARQLTIAYTPQQNGVAERANRTLVEMSRCLLVQAGLGDAFWAEAVNTSVY
FT                 LRNRSPTSALESMTPMEAWTGKKPSVTHLKVFGSLAVALDKGPKKGSKFQP
FT                 KGKEYIMVGYSVAAKGYRLYDAAARQLVEKRDVLFDENHDVEPKGDSVSIE
FT                 LEELEEPCQQDEPDNAENDSDASMHNGSSSESSDHYESAEDKDADVNVEER
FT                 RGPGRPKIIRTGQPGRPKKQYNILSALVSENVSIPLTCEEALSCTYAPEWR
FT                 AAMEREYDSLVANQTWQIVDLPKNQRAIGCKWVFNVKHDKDGRIERFKARL
FT                 VAKGCSQKFGVNYTETFSPVCRLESVRFMIALATELKLYLHQMDLGFVACD
FT                 NEPCLYKQSGEGNLSLILVYVDDLIIACQTQEDLVKIKAGISKSFECTDKG
FT                 PLNHFLGMEIERQGDLGEITLGHSQYIKDLLRTHGIENCRTAKTPLDAGFQ
FT                 VDCTSDHCKKVDPSLYQSIVGELMWLALTTRPDILHSVSKLAQRNQNPHAE
FT                 HMAGIKHVLRYLASTVEMKLHYRQCGQPFCGFVDADWAGDRHDRKSYTGYI
FT                 YFLAGGPISWRSEKQRSVALSSTEAEYMALSSAFKEAIVMRRLILEIGCGD
FT                 QSTPIIVYGDNLSAQELTKNPVHHFRTKHIDIHTLSFCKRSCEGWSSFVEI
FT                 "
XX
SQ   Sequence 3808 BP; 1168 A; 727 C; 989 G; 922 T; 2 other;
     ataggttatg ggcccaggca ctaaagaagt taaataaagg ttgtgcggtg tgtgactcag        60
     gawaaagaac aatgagtgct ctttatcaaa ttgacaagtt agaggagact aacatgtcac       120
     ctggaaaata cagatgcgat ctgtattggt gcattccggc ttgtggagcg tcacttctgg       180
     agagcttacg gaatcgaatg ttccagaagg acaaaattgg gtggccttgg ataataaggc       240
     gttggccaca attacattga gtgtaaagac ttctcaattg agccatatca agaactgtcg       300
     gactgcgttg gaggcttgga cgaaattgag agatgtacat cagccaagcg gacctgtacg       360
     aaaagtacag ttatacaaga aactgctcaa caagcggatg gagcaggggc aaagtatggt       420
     gacctacata agtgagttcg tggaaattct ggatggtcta gctggaatag gcatagagct       480
     aaacgatgaa cttcgcacta tcgttttgct gtcgaacctt ccagaacagt tcgagaattt       540
     cgtggtggct atagagacac gagatcagtt gccttccttt gaggttctca ccataaagct       600
     agaaagaaga gagcgagaga aaaggagtaa cagacgagaa tggcgacagt acaaaaggcg       660
     ttcgtcgcag cacagtccac agacatgcag acaagaaagg acttgcagac gaaacggaaa       720
     agtatcgttt gtttcaagtg tggaaaaaaa gggcacatca aatcacagtg tcgaagtgtg       780
     acagtgatgg caacaattcc acgttggcga aaaacacggt gaaccgccaa agcagcttgc       840
     taaatgcatg tgacgtcagc aacttaaaaa actcagtgtg gtgcttagac agtggcgcaa       900
     cgagccatat gtgttgtgaa aaggwgatat tcacaaaatt cgagaagcac acagaacaga       960
     tcggactggc cgatgctggt tttcttcaag ccgaaggaaa aggtgacgtc aagatacaga      1020
     cagacctgtg tatattgacg ctaaaaaatg ttccaaagat gaacggaaat ttcatgttcg      1080
     gtaagcagtg ctgtgcagaa caggtgcaag gtgatcttcg atatgaaaaa cgcccaggta      1140
     gtgcaagatg gtgaatgcat tgtgaaagct aataagatcg gcaacctgta tttgttcgaa      1200
     ggcggacgaa gtaagtgttt tgccatgaaa gcagtggatg gtgttttgct acacaagaga      1260
     tacggccaca ttaatttctc tagcatgaaa gagctggtat ccaaaggaat ggttcttgga      1320
     gtagaaaata tttcattgcc acaaaatatc aattgcaaga catgtatggt tagcaagatc      1380
     catgttcagc gttttccaac atcgacaagt aaccgggcta aggaattatt agaattgata      1440
     catgcagatg tttgtggacc ttttccgaca caatctttgg gaggttccaa gtattttttg      1500
     accttcattg acgacaaatc caggaggatt tttgtgtatt ttctgcgtgg gaagaacgag      1560
     gtgctatcga agttcattga gttcaagagc ttggttgaac ggcagacagg caaaaagctt      1620
     aaatgtctgc gaagcgataa cggaggagaa ttcgtcaaca agcaattcga tcagtttatc      1680
     aggcatcacg gcatcgctag gcagctcaca atagcgtata caccccagca aaatggagtc      1740
     gcggaaagag ctaatcggac actcgtggag atgtcaaggt gccttctggt ccaggcggga      1800
     cttggagatg ctttttgggc agaagcagtc aacacttcgg tttatcttcg aaacaggtct      1860
     cctaccagcg cattggagag catgacgccc atggaagcgt ggacgggtaa aaagcctagt      1920
     gtaactcatc taaaagtatt tggttctctt gcagttgctc tagacaaggg tccaaagaag      1980
     gggagcaaat ttcaacccaa aggcaaggag tacatcatgg ttggatactc ggtagcagcc      2040
     aagggttatc gcttatatga cgctgcagct cgacaactag tggagaaacg agatgtcctg      2100
     ttcgacgaaa accatgacgt ggaacccaag ggtgattctg tgtcaatcga actggaggag      2160
     ttggaggaac cgtgtcagca agatgagccc gataatgcag aaaacgattc tgacgcatcc      2220
     atgcacaacg gcagctctag tgagagctca gatcactacg agagtgctga agataaggac      2280
     gcagatgtga acgtcgagga acgcagagga cctggtcgac ccaagattat ccggactggg      2340
     caacctggtc gtcctaagaa gcaatacaac atcctgagcg ctctggtttc ggaaaatgtt      2400
     tcgattcccc tgacttgcga ggaggctttg agttgtacgt atgcgcccga gtggcgcgca      2460
     gctatggaaa gagaatatga ctctctggtt gccaatcaaa cttggcagat cgtggatttg      2520
     ccgaaaaatc agcgagcaat tggttgcaaa tgggtgttca acgtaaagca cgataaggac      2580
     ggccgcatag agcgtttcaa ggcgcgtttg gtggcaaaag gatgctccca aaagttcggc      2640
     gttaattata cggaaacatt ttctccagtt tgccgactag aaagtgtgcg atttatgata      2700
     gcactcgcaa cggagctcaa actatatctt catcaaatgg atttgggatt tgttgcttgc      2760
     gacaacgaac catgtttata caagcagagt ggagaaggta acctttcact aatacttgta      2820
     tatgttgacg atctcattat agcctgccag acgcaagaag atttggtaaa aattaaggcc      2880
     ggaatttcga aatcattcga atgcactgac aagggtccgc taaaccattt tttgggaatg      2940
     gaaatagaga ggcaaggcga tcttggagag atcactttgg gccattcgca gtacatcaag      3000
     gacttattgc gaacccatgg cattgaaaat tgcaggactg ccaagacacc tctggatgca      3060
     ggatttcaag tagattgcac aagtgaccat tgcaagaaag ttgacccctc gttgtatcag      3120
     tccattgttg gggagcttat gtggctagct cttacaacaa gacccgacat tttgcattcc      3180
     gtttcgaagc tggcacagcg gaatcaaaac ccgcatgctg aacatatggc tggcataaag      3240
     catgtgctca ggtatctcgc atcaacagtt gaaatgaaat tacactacag gcagtgtggt      3300
     caaccgtttt gtggatttgt ggatgcggac tgggcaggtg atagacacga caggaagtct      3360
     tacactggct acatctattt tttggctggt ggtccaattt cttggcgatc agagaagcag      3420
     cggagcgtgg cactaagcag tactgaggct gagtacatgg ctctatcgtc agcgtttaag      3480
     gaggccatag taatgcgtag gctcatattg gaaattggat gcggagacca aagcactcca      3540
     atcatcgtgt atggagacaa tctgagcgca caggagttaa caaagaaccc agttcatcat      3600
     ttcagaacca aacacattga tatacatacg ttatcatttt gtaagagaag ttgtgaagga      3660
     tggtcaagtt ttgttgaaat ataaatgtac aaatgaaatg ttagcagata ttttgacaaa      3720
     gaacctccct aagaagaaac atgaaggttt tacagaaatg ttaaatttgt actaaaattt      3780
     ttgtaaacat gcttgcattg aggaaggg                                         3808
//
ID   Copia-1_DFi-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.06, Created)
DT   23-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DFi_;
KW   Copia-1_DFi-I; Copia-1_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 888-888 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 221 BP; 71 A; 46 C; 35 G; 68 T; 1 other;
     tgttgaaaat aaagcccctg tatattatct atgtgacaat gcacgcttgt atatgtatga        60
     aagtaaacac agatcgcgag acctatatag ttgtctcgat ctaacgaaat agggataaga       120
     aaatatgtat accaaattct cctttgccaa acttcagtcg caaataaaat tccgcagcat       180
     acacacggtg tttcktttct ttccttaatt tctgccgctc a                           221
//
ID   Copia-1_DGri-I repbase;    DNA;    INV; 4126 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DGri_;
KW   Copia-1_DGri-LTR; Copia-1_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4126
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1287-1287 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1443-1952] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1167..4091
FT                 /product="Copia-1_DGri-I_1p"
FT                 /translation="MKNNNMVWLRAKRYGNLYYLDSERIQANSIEGRSQKN
FT                 IDMWHYRMGHLNEGDLKSMAKSGKVYGMNVKDNEKLSKCEVCISEKQTTKT
FT                 YKTTTDKRTTDLLEIIHSDVCGPMRKESMSGYRYYVTFIDDQSRYCEIYFL
FT                 KQKSEVFKMFKQYKAEVENFTGRKIKALQSDNGTEYCNVEFDSYLKKHGIR
FT                 RRLSAPYTPQQNGLAERQNRTLVEMARCMMRQAGAPPMFWAEAVNTACYIR
FT                 NRCPTKGLSGGIPYTMWTNKIPTLAHMRTFGTKAFALEKGVKKGKFDSRSE
FT                 ECILLGYATSSKAYRLYVPERHKVIISNDVKFLDIPGFKTKYEEFYGKEDI
FT                 DVVITTNEPSEHCEDAMDESEEEKQELHNPRRGRGRPKTIRTGQRGRPRKL
FT                 YKEVRCSSSSNDEAGDAKAEDDIIEECEMAFTCVDGPSTLQEAKNSKEADA
FT                 WTKAIEDEFLAQVLNETWDLVERPADRKVIGNRMVFRTKDDGSAAGKKKVR
FT                 LVAKGYAQRPGEDYHDTYSPVVRFTSVRLLISLAVEADMEIHQMDVVTAYL
FT                 NGELEESVFMDIPEGFTDFMEKLESGSPIGTRDTPQGAAYLKAAAAWRKGI
FT                 SKSKNPVCLIRKALYGLRQSGLRWYHKLTTKLLESGLEPTKQDPCLFVRRQ
FT                 GSKTLLITIYVDDLLLASNDPTWMENIKADLCNAFEMKDIGKVRTCLGIQF
FT                 KQSIDKHWIFISQEQYVGAILKKFGMIKCKPALTPIEAKCNLKRPEIIDEG
FT                 EMRKYPYQSLIGALMFLSVTTRPDIAFAVSFMSQFNSNYNVEHWKAAKRIL
FT                 RYLSGTKKLGLLYKQTGEDLFGVVDADWGANLSDRRSYSGQAFILSGAAVC
FT                 WEARKQRTVALSSTESEYLAMSEAVKEALYLKALLNSVGKDCATVRLYNDN
FT                 QSAQKLVTGFGFHPRTKHIDVRHHFIKQKYLSGDIEVEYMQTEQMPADVLT
FT                 KGLSGTKHRECISSLGVTYI"
XX
SQ   Sequence 4126 BP; 1363 A; 801 C; 1053 G; 889 T; 20 other;
     aatctccaac aggttatggg cccagcacgc ttccastgcg cggaaaatwa taataatcac        60
     ttgagaacaa tagaasgtta taaatgcaaa aagtgaaaaa atkagtgcct ttataaaaat       120
     agaaccgctg tgcgcagaaa attackatac atggaaatta caaatgcaag ccgtactmgt       180
     gaagawcgac ctatggcagt acgtggacgg cactaagacg gacgggawcg actccgccgt       240
     atggaaaacg tatgacgaaa aagcgcgtgc ggatatagtg ttggcgatta ggccatccga       300
     attggctgta cgtcagctgc caactgctgg acaaagctta gggaaacatt tcaatcamga       360
     ggaccagtgc ggaaagcatc tctcctgaag aaaatcgcat tgtcgcggct wagtgaagat       420
     ggcaatgcgc gccaacatgt gtacgagttc ttcgaggctg tggascaact cagggaaatt       480
     ggcgtgacaa taggcgatga tttgctcagc atactsctgc tttacagttt gcccgaatca       540
     tacgaaacgt ttcggtgcgc aatggaagca agagatgatc ttccaaggtc agatgttcta       600
     aaagtaaaaa tactagaagt aaatgcgcgc aaaactaagt gtgaacgtga agagcaaaac       660
     gtaatgttcg ctcaccgaca aaacggtaaa cgcgataagc cgmcwaaagt gcgagagaac       720
     agaaaatgkt ttacttgcaa taaaacggga catatagcgc gcaactgtcg taacaaggca       780
     aaaggcmaag gmgaagagcc agagaaccaa agagasagag caaagagagc tgaagaakcc       840
     acgctcgctt gtcagaccaa tttctgtgta aataaagttg gtatgtggtg cctagacagt       900
     ggatgtacgg cgcatatgac ttcaaatgtg gattcctttg aaaatatcgc aatgatcgaa       960
     aagacattgc atttggcaaa caatgaaacg acacagatca gtggagtcgg tgatgtacga      1020
     atcgcagttg agaaaatcaa acaaaagaga atgtaactct gagtgaagtg ctttgtgtgc      1080
     ccgatctgag acaaagtctg ctgtcgatcg caaagatcac agacagaggt tacgaggtcc      1140
     atttcagaaa aaacgatgcg ttgataatga aaaacaataa tatggtttgg ttgcgtgcaa      1200
     aaagatatgg aaacctatac tacttggaca gtgagcggat ccaagcaaac agcatagaag      1260
     ggcgcagtca aaagaatatt gacatgtggc attaccgcat gggacactta aacgaaggag      1320
     atttaaagag catggcgaaa agcggcaaag tktacggtat gaatgtcaaa gacaacgaaa      1380
     agttgtcgaa atgtgaagta tgtataagtg agaaacaaac tacaaaaact tataaaacta      1440
     caactgataa gagaacgact gatttgctcg aaattataca cagcgacgtg tgcgggccaa      1500
     tgaggaaaga gtccatgagt ggttacagat attatgtaac ctttatcgat gatcagtcaa      1560
     gatattgcga gatatatttc cttaaacaaa aatctgaggt gtttaaaatg ttcaagcaat      1620
     ataaagcaga agtggaaaac ttcaccggaa ggaaaataaa agcactacaa tcggacaacg      1680
     gaaccgaata ttgcaacgtg gagtttgata gctatctgaa gaagcatggc atccggcgta      1740
     ggcttagtgc cccatatacg ccgcagcaaa acggattggc agagaggcaa aacagaactc      1800
     ttgtggaaat ggccaggtgc atgatgagac aagcgggagc gcctccaatg ttttgggcag      1860
     aagctgtaaa cacagcttgc tacattcgca acaggtgccc aacgaaagga ctatctggag      1920
     ggattcccta caccatgtgg acaaataaga tcccgactct ggcccacatg cgaacgtttg      1980
     gcacaaaggc atttgcgctt gagaaaggcg tcaagaaagg caaattcgat tccagatctg      2040
     aagagtgcat tctgctggga tacgcaacaa gctcgaaagc gtatcggtta tacgtgccgg      2100
     aaaggcacaa ggtgatcata tctaacgatg taaaattctt ggatattcca ggtttcaaaa      2160
     cgaaatatga agaattctat ggcaaagaag acattgacgt cgtcatcaca acaaatgagc      2220
     caagtgagca ctgtgaggat gcgatggacg aatccgaaga ggagaagcaa gaactacaca      2280
     atccgcgtcg tggtcggggg cgtccaaaaa ctattcggac gggtcaacgc ggaaggccac      2340
     gaaaattgta caaagaggta cgatgcagca gcagcagcaa tgatgaggcg ggagacgcca      2400
     aggcagagga tgacatcatt gaggagtgcg aaatggcttt tacatgcgta gacggtccgt      2460
     ctacgttgca agaagctaaa aattctaagg aagcagacgc gtggactaaa gcaatcgagg      2520
     acgagttttt agctcaagtg ctaaatgaaa cgtgggacct cgtagaacga ccagccgatc      2580
     gtaaagttat cggcaacaga atggtatttc gcacaaagga tgacggcagc gctgcaggca      2640
     agaagaaagt gcgtctggtg gccaagggat acgctcagcg accaggagaa gattatcatg      2700
     acacttattc acccgtagta cgatttacat cggtcagact gcttatatca ttagcagtag      2760
     aagctgacat ggaaatccac caaatggatg tggttacggc atatttaaat ggagagctcg      2820
     aagagagcgt cttcatggat ataccagagg gatttaccga cttcatggaa aagttagaat      2880
     caggatcacc gatcggaaca agggacaccc ctcaaggagc ggcatatcta aaagccgctg      2940
     cagcttggcg gaaaggaata agcaaatcca agaatcctgt ttgtctaata cggaaggccc      3000
     tttatggact gcggcaatct ggcctacgtt ggtaccacaa gttgaccact aaattactgg      3060
     agagtggatt ggagcccacc aaacaggacc catgcttatt tgtaaggaga caagggagca      3120
     aaactctgct tatcacgata tacgttgatg acttattgtt agcatcaaat gaccctacgt      3180
     ggatggaaaa tattaaggca gatctctgca atgcttttga gatgaaggat atcggcaaag      3240
     tgaggacttg cctaggcata caatttaagc agagcataga caagcactgg atattcattt      3300
     cacaggaaca atatgttggt gccatattga agaaatttgg catgatcaaa tgcaagcctg      3360
     cattgacacc aatcgaggca aagtgtaacc tgaagcgtcc tgagattatc gacgaaggcg      3420
     aaatgcgaaa gtatccttat caaagcttaa ttggtgcttt aatgtttctt tcagttacga      3480
     cacgcccgga tattgcgttt gctgtgagct ttatgagtca gttcaacagc aattacaatg      3540
     tcgagcactg gaaggcagcg aaacgcatat tgaggtatct aagcggtaca aagaaattgg      3600
     gcctgttata caagcaaaca ggcgaggatc tatttggcgt ggtcgatgca gattggggag      3660
     cgaatctaag cgataggcgc tcctattcag ggcaggcgtt catactatct ggagcagctg      3720
     tgtgctggga ggcacgcaag caacgtactg tggcactatc gagtactgag tcggagtacc      3780
     ttgcgatgtc cgaagcggtc aaggaggcac tatatctgaa ggccctacta aacagtgttg      3840
     gcaaagactg cgccacggtg cgtctttata atgacaatca gagcgcacaa aaactggtta      3900
     caggcttcgg gtttcacccg cgtacaaaac atatagatgt acgccaccac ttcatcaagc      3960
     aaaaatacct gagcggcgac attgaagtgg agtatatgca aacagaacag atgccagcag      4020
     acgtcctgac gaaaggtctg agcgggacca aacatcgcga atgcatttcg agtttgggag      4080
     ttacatatat ttaagttaag agtattgtta ctttaaggga gcgtat                     4126
//
ID   Copia-1_DGri-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DGri_;
KW   Copia-1_DGri-I; Copia-1_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-308
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1288-1288 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 308 BP; 90 A; 65 C; 59 G; 81 T; 13 other;
     tgttattatc gcgaatagta taataatatg ttaaagcagc aatgttkaca tagttctgta        60
     tgcacaacgt acatmgagtt accacaacat cctgtatgcg agtctcttaa cagatcactg       120
     taaagacgmg cakaacatcg atwagcgtaa tttagtcgtt ccattwcatt aagcagagaa       180
     ggccgcgcwg cgctcgacga aaakwtattg maacgtwtat atgagcataa cctctatgga       240
     aawctcctcg tgttattmat ggtcatgggc ccggtgtttc gatcagtaag cctgcaccca       300
     taacccca                                                                308
//
ID   Copia-1_DHyd-I repbase;    DNA;    INV; 4060 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_DHyd-LTR; Copia-1_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4060
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2403-2403 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4023
FT                 /product="Copia-1_DHyd-I_1p"
FT                 /note="DUF4219, gag, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MSSMFAIEKLDSENYSAWSVQMKSLLIHSDLWSVTCG
FT                 RLLKNENDTVEQKASFDSKDEKALASILLSVKASEINCIKHCGTAREAWTK
FT                 LSEIYMPSGPARKVQLFKQLLHIKMSATDSVREHLNNFSNVVEKLNEIQVQ
FT                 VADEMLVIILLASLHEELDNFVVAIETRDTLPSFSAIKIKLLEEGERRNIG
FT                 EVGEKGENTIFTSRPANGKRNKTKKDPKDTKCWLCGQNGHFAAKCRLREKK
FT                 VDKDNESEKTIEKSSKKSFSVFPFLGNIQLTKNVWCVDSGATAHLCADKSM
FT                 FVYMRDHKEKIKLAGDNYIETEGCGSVLLKWKNNTIELVDVLYVKDLQCNF
FT                 ISVSKATEKGLKVIFVKNKVYVKDRNNDNRLVAEKHNDLFLFESSMKTVVA
FT                 ANVNANMNQLVKWHDRFGHLNFDSLNKMIKQGMVNGLPASVCNTNDFVCET
FT                 CAKSKICVKKFPKVSENRSKELLALVHTDICGPMRTASQGGARYFATFIDD
FT                 KSRYMSVYVLKHKSDVFEKFKDFKKLAENQTGKRIKAIRSDNGREYLSGTF
FT                 EKFLSSHGIKRQLTVPHTPQQNGVAERANRTLVEMARSMMVHAGVGESFWG
FT                 EAIMTAAYLRNRAETAALIGKTPYEDWYGKKPSVSHLKVFGMEAIVLNKKH
FT                 KNKFSAKGERHILVGYSETAKAYRLYNPVKRSVVLSRDVVFLEHKFRKGLE
FT                 HDQGSSHEPDVLILEPDEKLSCEQNDESHDPDEQQQSPTVDGQCQSGDEED
FT                 AEEEQVTGKRGPGRPRIVRTGRLGRPRKEYNVLNVLDARNVVVPTCVREAF
FT                 RSEQSENWKSAMQKEYDSLKNIETWSLVDLPAGEKVIGCKWVFTTKRDEYG
FT                 NVQRFKARLVAKGCGQQYGVNYTETFSPVARYSSIRLVIALAVENEMHLHQ
FT                 MDVSAAYLNSELHDDVYMRQPEGFIDADHPKRVLKLKKSLYGLKQSGREWN
FT                 QKLESTLLEIGFVPCASEPCIYTNKIKGYLNIIVVYVDDFILACTREEDVA
FT                 HIKQLISNKFDVVDGGELHYFLGMEIERDGKTGSLSIGHKQYIEELLNDYG
FT                 MQDCKPSATPLEIGFQMKCDDVDCGQVDKTRYQSLIGSLLYLALTTRPDII
FT                 HSVAKLAQGNADPHKEHEVAAKRVLRYLKGTSYLKLHYNKTGVPIHCYVDA
FT                 DWAGDSNDRKSFTGWSFYLAGAAVSWESKKQNLVALSSTEAEYVALSTAAK
FT                 EAVYVRKLINEMELGPMAKVLIYSDNQSAQCLAKDAKFHSRSKHIEIKYHF
FT                 VREMYKNKVIDIKYIPTDEMISDVLTKNLCKVKHEKFTVMLGLK"
XX
SQ   Sequence 4060 BP; 1345 A; 681 C; 1014 G; 1019 T; 1 other;
     ggttatgggc ccaggcagcg gaaagtgaaa gctgtgctgg tgattggaaa aatcacatat        60
     gagactcgat ttattagtta aagcgtgtgc taaactaawt tgtgcaaaat gagttcaatg       120
     tttgcaattg agaaactaga tagtgaaaac tatagtgcgt ggtcagtgca gatgaaaagt       180
     ctgttgattc attctgactt gtggtcggtg acatgtggtc ggttattaaa aaatgagaac       240
     gatacagtgg aacagaaagc gtcgtttgat agcaaagatg agaaagctct agctagcatt       300
     ttgttgtctg taaaagcgtc ggagataaac tgtataaagc actgtggaac cgcgagagaa       360
     gcatggacaa agttatccga gatctacatg ccttcgggac ccgcgcgtaa agtacaattg       420
     ttcaagcaat tgttgcatat taaaatgtca gctacagaca gtgttcgtga gcatttgaat       480
     aatttttcta atgtagtaga aaaattaaat gaaatacaag tgcaggtggc tgatgaaatg       540
     cttgtaataa tattactagc aagtttacat gaagagttgg acaatttcgt agtcgctatc       600
     gaaacacggg acacattgcc ttcatttagc gctataaaaa tcaaattgtt ggaggaagga       660
     gagaggcgca acataggcga agtgggtgaa aaaggcgaga atacaatttt tacgtcgcgt       720
     ccagcaaacg gtaaaagaaa caagacaaag aaagacccga aagacacgaa gtgttggttg       780
     tgcgggcaaa acgggcattt cgcggcgaag tgcagattaa gagagaaaaa ggttgataaa       840
     gacaacgaga gcgaaaaaac gatcgaaaag agcagtaaaa agtctttttc ggtgttccct       900
     tttcttggaa atatacaatt gacaaaaaat gtctggtgtg tggacagtgg tgctacagct       960
     catttgtgcg cagacaaatc aatgttcgta tatatgcgtg accacaaaga gaaaataaaa      1020
     ctagcaggcg ataattacat agaaaccgaa ggttgcgggt cagtgttgct taagtggaaa      1080
     aataatacga tcgaattggt cgacgtttta tatgtgaaag acttacaatg caactttata      1140
     tctgtgtcaa aggcaactga aaaggggtta aaagtaattt ttgtgaaaaa caaagtgtat      1200
     gttaaagaca gaaacaatga caatcggcta gttgcagaaa aacataacga tttgttttta      1260
     tttgaaagta gcatgaaaac agtagttgca gctaatgtaa atgcaaatat gaatcaattg      1320
     gtgaaatggc atgatcggtt cgggcatcta aatttcgata gcctaaataa aatgattaaa      1380
     cagggcatgg ttaatggact tccagctagt gtgtgtaata caaatgactt tgtgtgcgaa      1440
     acgtgtgcaa aaagtaaaat ttgcgtgaag aagtttccca aagtatcaga aaatcgctca      1500
     aaagaattac tagctttagt tcatacagac atatgtggtc ctatgcgtac ggcatcacaa      1560
     ggtggagcgc gttattttgc aacattcatt gacgataaat cgcgttatat gtcggtgtac      1620
     gtgctaaaac ataaaagtga tgtatttgag aaattcaaag actttaaaaa attagctgaa      1680
     aatcaaactg gaaaacgcat aaaagccata agaagcgaca acgggcgtga gtacctgagc      1740
     ggtacatttg aaaaattctt atcaagccat ggtataaaaa gacaactaac tgttccccac      1800
     actccacaac aaaatggtgt ggcggaacgc gccaacagaa cactggtgga gatggcgcga      1860
     agtatgatgg tgcatgctgg agttggtgaa tctttttggg gagaggcgat aatgacggct      1920
     gcgtatctac gcaatagggc tgaaactgca gccttgattg gcaaaactcc atatgaggat      1980
     tggtatggga aaaaaccgag cgtatctcat ctaaaagtat ttggaatgga agctattgta      2040
     ttaaataaaa agcataaaaa caagttttca gcaaaaggcg agcggcatat actggtaggt      2100
     tactctgaaa ctgccaaagc ttatcgtctg tacaaccctg tcaaaagaag cgttgtgtta      2160
     tcccgagatg ttgtgttttt agagcacaag ttcaggaaag gattggagca cgatcaaggg      2220
     tcatcacatg agccagatgt gctaatcctc gagccagatg aaaaacttag ttgcgagcaa      2280
     aatgatgaaa gtcacgatcc tgatgagcag cagcaaagtc caactgttga tgggcagtgt      2340
     caaagtggtg acgaagaaga tgctgaggag gagcaggtga caggtaaaag aggtccaggg      2400
     agaccacgaa ttgttcgcac tgggcgtcta ggtcgtccac gaaaagagta caatgttctg      2460
     aatgtactag acgctcgaaa tgttgttgtt cccacatgtg ttagggaggc atttcggtca      2520
     gaacaatctg aaaactggaa atcggcgatg cagaaggagt atgacagcct gaaaaacatt      2580
     gagacatgga gtctggtcga tcttcctgca ggcgaaaaag ttattggttg taaatgggtt      2640
     tttaccacca agcgtgatga gtatggcaac gttcagcgtt ttaaagctag attggtcgcg      2700
     aaagggtgcg gacagcaata cggagttaac tacacggaaa cgttctctcc agttgcacgt      2760
     tactcctcaa tcagattagt gattgcgtta gctgtcgaga acgagatgca cctgcatcag      2820
     atggatgtct ctgcagcata cctgaacagc gagctacacg atgatgtgta tatgcgacaa      2880
     ccagagggct ttatcgacgc tgatcatccc aagcgcgtac tgaagctgaa gaaatcgttg      2940
     tacggcttga aacagagcgg tcgggagtgg aaccaaaagc tagagagtac tcttttggag      3000
     attggtttcg tcccatgtgc tagtgaacca tgcatttata caaacaagat caaagggtat      3060
     ttaaatatta ttgttgtata tgttgacgat tttatactag catgtaccag agaagaagat      3120
     gtggcccaca ttaagcagct catatcaaac aaattcgatg tggtcgatgg tggtgaactg      3180
     cactactttt tgggaatgga aattgagcga gatggcaaga ctggtagtct ctccataggc      3240
     cataaacagt acattgaaga actactaaat gattacggca tgcaagactg caagccaagc      3300
     gcgactccgt tggaaattgg tttccagatg aagtgcgatg atgttgactg cggccaggtg      3360
     gataaaacac gctatcaatc gctcattggt tcgctattgt atttggcgtt gacaacacgg      3420
     ccagatataa tacactctgt ggccaagctg gcgcagggaa atgcagatcc gcacaaggag      3480
     catgaggttg cagccaaacg ggtattgaga tatctaaaag gtacctcata tttgaaacta      3540
     cactataaca aaacgggtgt gcctatccac tgttatgttg atgcagactg ggctggcgac      3600
     agcaacgatc ggaagtcttt tacgggttgg tcattctacc ttgctggagc agcagtctct      3660
     tgggaatcaa agaagcagaa tttggtcgcc ctcagtagca cagaggccga gtatgtggca      3720
     ctttctacgg cagccaagga ggcggtatac gttagaaaat tgatcaacga aatggagctc      3780
     gggccgatgg caaaggtgct gatttatagt gataatcaga gcgcacaatg ccttgctaaa      3840
     gatgcaaaat ttcattcgcg tagcaagcat attgaaataa aataccattt tgtaagggaa      3900
     atgtacaaaa ataaagtaat agatataaag tacattccca cagatgaaat gatatcagat      3960
     gtattgacga agaatttatg taaagtcaaa catgagaaat ttactgtaat gctaggatta      4020
     aaatgataca ttttgtaatc atgatcgcat tgaggaaggg                            4060
//
ID   Copia-1_DHyd-LTR repbase;    DNA;    INV; 123 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-123
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2401-2401 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 123 BP; 47 A; 18 C; 19 G; 39 T; 0 other;
     tgttgaagaa tatcatccgt tacaatgcga tatgatatat cgatagaaag tatggtacat        60
     ataagatgat aagtaccacc tctaagtttt aagtcagtct ctaataaacc tctaaattga       120
     ata                                                                     123
//
ID   Copia-1_DMo-I repbase;    DNA;    INV; 4606 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4606
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           137..1000
FT                 /product="Copia-1_DMo-I_1p"
FT                 /translation="MDKNKYNIIPFGGHKYSVWKFRIREALAELDVLKVVD
FT                 EAIPHEIDDSWKKAERCAKSTIVQHLSDSYLNFAKNNVSAREIFEKLDSIY
FT                 ERRSLTSQLTARKRLTALQLTSEMELSTFFIKFDEIISEILAAGATMSEME
FT                 KVTQLLMMLPSTYDSVVTAIETLADEFISLAFVKDKLLDFEIKIKNNRNDT
FT                 SSKVLKAVVSHNSNFNKKHMFKGRSTVQKRPIKGKGRINIKCHHCGKLGHI
FT                 KRNCYSYNKQINNNKKTKKIQPMPRLVHILQQSSKQIIKVLRLCSEV"
FT   CDS           1014..4055
FT                 /product="Copia-1_DMo-I_2p"
FT                 /translation="NKNVKFILDSGASDHLIKDDTLFTDHRILETPLKIAV
FT                 AKNDAFIFATKREVVRLENDYNITLEDVLYCEELTENLISVKRLQEAGVAV
FT                 VFDEFGVKMTRNGITIAENPGAYDMPILEFKTYKINVENKNLYKLWHERLG
FT                 HISKGKILEIKRRNLFSDNRLLDNVNPTDDICEACLNGKQARLKLEKQKNK
FT                 EHINRPLLVVHSDVCGPITPTTINDKNYYVIFVDQFTHYCVTYLIKHKSDV
FT                 FIMFKDFVAKSEPHFNAKVVNLFIDNGREYLSSDMRDFCVLKGISYHLTVP
FT                 YTPQLNGVSERIIRTITEKARAMINGASLDKCFWGEAVLTATYLINRTPSK
FT                 ALGDHAITLYEMWHNRKPTLKYLKIFGSTVYVHNKNRKQKFDNKSFKSILV
FT                 GYEPNGYKLWDIESEKFFIARDVVVDETNMVNSRGVKDIFLNESKDDKDNF
FT                 LNESKDDKDNFLNESKDDKDNFLNESKDDKDSFPNESKENTESDIAKIRRS
FT                 DRLMNKPQISYNEDNENLNKYIMNAHTIFNETPYTYDEKGSRKDKTLWEET
FT                 IKEELLAHELNKTWTIVKRPKNKNIVDSKWVFSLKHDETGNPVRYKARLVA
FT                 RGFTQKYQIDCDETFAPVARISSFRIILSIANQYSFKVHHMDVKTAFLNGT
FT                 LKEDIFMKIPQGIVCNNENVCKLNKAIYGLKQAARCWFEVFEQTLRDFKFK
FT                 NSPVDPCIYVKDNGDINKNIYVLLYVDDLVIATSDISVMNNFKEYLKTKFR
FT                 MTDLGEIRYFIGMKIEVEEDKISLSQSAYISKVLHKSNMLECKTVSTPLPS
FT                 KLNYEMLNSDASYDAPCRSLVGSLMYIMLCTRPDIATAINILSRYTNKNNI
FT                 ELWQGLKRILRYLKGNIDMKLAFTRNSDYAHMIVGYVDSDWGGNEIDRRST
FT                 TGYLFKMYNSNLICWNTKKQNSLAASSTEAEYMALFEAVREALWLKSISES
FT                 INIKLNNQIKIFEDNQGCISIASNPSSHKRSKHIDIKYHFAREQIENNIII
FT                 IEYIPTEN"
XX
SQ   Sequence 4606 BP; 1724 A; 614 C; 869 G; 1399 T; 0 other;
     ggttatgggc ccagtccatg ccgttttaga gaaaataaat tcatattagt tcttgtgaaa        60
     ttaattcgcg tgcatttttt tttcgcatat atatttttgg ttttattttg aacagtattt       120
     gcattccaat attaaaatgg ataagaacaa atataatatt attccatttg gaggtcataa       180
     atattccgta tggaaatttc gaatcaggga agcacttgcc gaattagatg tgctaaaagt       240
     tgtcgatgaa gctattccac atgaaattga cgattcgtgg aaaaaggcgg agagatgcgc       300
     gaaaagcaca atagtccaac atttgagtga ctcatattta aactttgcga aaaacaatgt       360
     ctctgcacga gaaatttttg aaaaattaga ttcaatttat gaacgcagaa gtcttacaag       420
     tcagttaact gctcgtaagc gtctaactgc acttcaatta actagtgaaa tggaactatc       480
     aacctttttt ataaaatttg atgaaatcat aagtgaaatt ctagcagcag gtgcaacgat       540
     gagtgagatg gaaaaagtta cacagttatt aatgatgttg ccctcaactt atgatagcgt       600
     cgttacggca attgagactt tggcagatga gtttatttcg ttagcttttg ttaaagacaa       660
     attgttagat tttgaaatta agataaagaa caatagaaat gacactagta gcaaggtgtt       720
     gaaggcagtt gtgagccaca atagcaattt taataaaaaa catatgttta aaggtaggag       780
     cacagtgcaa aagagaccaa ttaaaggaaa aggtagaatt aatataaaat gtcaccactg       840
     tggcaaatta ggtcacataa aaagaaattg ctatagttat aataaacaaa taaacaataa       900
     taaaaaaaca aagaaaatac aaccaatgcc gcgtctagtg cacatattgc aacagtcaag       960
     caagcaaata atcaaggttt tgcgtttatg ctcagaagtg taaatgaaaa taaaataaga      1020
     acgtgaaatt catcctcgat tcgggtgctt ctgaccacct cattaaggat gatacccttt      1080
     ttacggatca tagaattttg gagacacctt taaaaatagc tgtcgccaag aatgatgctt      1140
     tcatctttgc aacaaaacga gaagttgttc gactggaaaa tgattataat ataacactcg      1200
     aggacgtgtt gtactgcgaa gaacttacag agaatttgat ctctgtaaag aggctgcaag      1260
     aggctggcgt ggcagtagta tttgatgagt ttggagtaaa aatgacaagg aatggaatca      1320
     cgattgcgga aaatccaggt gcgtacgata tgccaattct tgaatttaaa acgtataaaa      1380
     taaatgttga aaataaaaat ttatataaac tgtggcatga aagattaggt catattagca      1440
     aaggaaaaat actagaaatt aaaagaagaa atttatttag tgacaataga cttcttgata      1500
     atgttaatcc tacagacgat atatgtgagg catgcttaaa tgggaaacaa gcaagactta      1560
     agctcgaaaa acaaaagaat aaagaacata taaatagacc tttgctagtt gttcattctg      1620
     atgtctgcgg ccctataaca cccactacta taaatgacaa aaactactat gttatttttg      1680
     tagatcagtt tacacattat tgtgttactt atttaattaa acataagtct gatgtgttta      1740
     ttatgtttaa agattttgtg gctaaaagtg aaccccattt taatgctaaa gttgtcaact      1800
     tgtttattga caatgggcgg gaatacctat cgagtgatat gcgtgatttc tgtgttttga      1860
     aaggaattag ttaccattta actgtaccgt atactcccca gttaaatgga gtttcagaac      1920
     gaattatcag aacaataaca gaaaaagctc gtgccatgat aaatggtgcg agtttagata      1980
     agtgtttttg gggtgaagct gtgctgacgg ccacatactt aataaataga actccaagta      2040
     aggcacttgg agatcatgct atcactctat atgaaatgtg gcataataga aagccaactt      2100
     taaaatattt aaaaatattt ggttcaactg tgtatgtgca caacaagaat agaaaacaga      2160
     aatttgacaa taaatcattt aaaagtattc ttgtagggta tgaacccaac ggctacaaat      2220
     tatgggacat tgaaagtgaa aagttcttta ttgctaggga tgtggtagtc gatgagacga      2280
     atatggttaa ctcgagagga gttaaagata ttttcctgaa tgagagtaag gatgataaag      2340
     ataatttcct gaatgagagt aaggatgata aagataattt cctgaatgag agtaaggatg      2400
     ataaagataa tttcctgaat gagagtaagg atgataaaga tagtttcccg aatgagagta      2460
     aggaaaatac tgagagtgat atcgcaaaga ttcgaagaag tgatagactc atgaataagc      2520
     cacaaatatc ctacaacgaa gataacgaaa atttaaataa atacataatg aacgctcaca      2580
     ctattttcaa tgaaactccc tacacatacg acgaaaaagg aagtagaaaa gataagacgt      2640
     tatgggaaga aactattaaa gaagaattat tagcacatga attaaacaag acatggacta      2700
     ttgttaaaag acctaaaaat aagaatattg tagatagcaa atgggtgttt agtttgaaac      2760
     atgacgaaac aggtaatcct gtaagatata aagcaagatt agttgcacga ggtttcacac      2820
     aaaagtatca aatagattgc gatgaaacat ttgcccctgt tgctagaatt tctagttttc      2880
     gcataatatt gtccattgca aaccaatata gtttcaaagt gcatcatatg gatgtaaaaa      2940
     cggcatttct taatggtaca ttgaaggaag acatatttat gaaaattcct caaggaattg      3000
     tctgtaataa tgaaaatgtg tgcaaattaa ataaagctat ttatgggctt aaacaagcag      3060
     caagatgctg gtttgaagtg tttgagcaga cgttaagaga tttcaaattt aaaaattcac      3120
     ctgttgatcc ctgtatatat gtaaaagata atggggatat aaataagaac atatatgtat      3180
     tactatatgt ggacgattta gttatagcaa catcagatat aagcgtaatg aataacttta      3240
     aagaatattt aaaaacaaaa tttagaatga ctgacttggg cgaaattaga tacttcatcg      3300
     gaatgaaaat tgaagtcgag gaggataaaa tatcattaag tcaatctgca tatattagca      3360
     aagttttgca caaatctaat atgctagaat gcaaaactgt tagcactcca cttccaagta      3420
     agctaaacta tgaaatgctg aactccgatg caagttacga tgccccttgt cgtagtttag      3480
     ttggtagttt aatgtacata atgctgtgta cacggcctga tatagctaca gccatcaata      3540
     ttctgagtag atacactaat aaaaataata tagaactatg gcaaggatta aaaagaattc      3600
     tgaggtattt gaaaggaaat attgacatga aactagcttt tactagaaac tcggattatg      3660
     cacatatgat tgttgggtat gttgactcag attggggagg aaatgagatt gacagaagaa      3720
     gtacaacagg ctatctattc aaaatgtata attcaaacct tatttgttgg aatactaaga      3780
     agcaaaattc attagcagcc tcatctactg aggcagaata tatggcatta ttcgaagcag      3840
     taagagaggc gttatggtta aaatcaatct cagaaagtat taatattaaa ttgaataatc      3900
     aaataaaaat atttgaagat aatcagggtt gcatcagtat agctagcaat ccatcaagtc      3960
     ataaaaggtc aaaacacatt gatataaaat atcatttcgc cagagagcaa atagagaata      4020
     atattattat tattgagtat attcctacag agaattagct ggcggacatt ctaacaaaac      4080
     cattggtcgc tggacgcttc gtggaattaa gaagcaaact tggattacaa tgaatgtatt      4140
     gaatgctaaa gaatttgtta atgaagtttt ttaagtcaaa atattttttt gaatttgaat      4200
     aatttttttt gtttgtttta tataatttaa cgtaacttga attaagaagc aaacttagat      4260
     tgagatgaat gcattgaatg ctaaaagatt tattaatgaa gttcctttaa actaaactaa      4320
     gtcaaaatac tttttcatat atattaattt gaattaattt tgtttatttt gtataagtta      4380
     acataatttg aaattattgt gaatcatatg tgaagaatat gtatttaagt tttttttaat      4440
     gatctgatcg ggtttttctg ggttttcccc gtatccttgc agcgaatgct ggatcattta      4500
     acacttccca gacagcacac caaccacttt agtctaacat ttcttgaatt taatttttgt      4560
     aatattacgt gtaagattta taataatgtt atttttgagg agggcg                     4606
//
ID   Copia-1_DMo-LTR repbase;    DNA;    INV; 278 BP.
XX
AC   .
XX
DT   16-SEP-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-278
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 278 BP; 111 A; 34 C; 31 G; 102 T; 0 other;
     tgttgaaata cgataacaat aataacatta ttataaatag tattaaacta tcggttaaat        60
     accagattca attctaatgg tattaatgta ttttatcata tgtaaatatc ttgtcactct       120
     gaattatgat ctctctcttt ctttaaatat tctaaagtgt atagacgtgg tattggtgta       180
     actgaaaatt aatctgataa aataaactta atcatataac taaactgaaa tataaaaact       240
     ctattatttc tctatagtga aaagctagaa gtacaaca                               278
//
ID   Copia-1_DPer-I repbase;    DNA;    INV; 4739 BP.
XX
AC   super_0;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DPer_;
KW   Copia-1_DPer-LTR; Copia-1_DPer-I.
XX
NM   Copia-1_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4739
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_0; Positions 11771780 11767042.
XX
CC   Positions [1837-2046] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           831..1946
FT                 /product="Copia-1_DPer-I_2p"
FT                 /translation="MKKDCYQFIRLNQNKENYKHNKQAQLAASGHGFAFMM
FT                 RKMKKSDQINNELGFILDSGATDHLINDDSLYADCIELEQPIKIAVAKEGE
FT                 FLYATKRGIVRLHNGHNITLEDVLYCKEAAGNLMSVKSLQQAGMSIKFDCG
FT                 GVSISKNGVSVVKHTGMLDIPVVKFQAYSVDARNKNNYRLWHERLGHISNA
FT                 KLLEINNNNLFNDSNLLVNLKISDEVCESCLNGKQARLPFKQSKDKSYIKR
FT                 PLFVIHSDVCGPIKPVTLDDKNYFVIFVDQFTHYCVTYLLKYKSDVFNVFK
FT                 DFVAKSEAHFNFKIVNLYIDNGREYLSNEMREFCVNKGISYHLTVPYTSVE
FT                 WCFGANDKNHYRESSCYGKWCKIRQKFLG"
FT   CDS           1876..4386
FT                 /product="Copia-1_DPer-I_1p"
FT                 /translation="MIRTITEKARAMVNGAKLDKSFWDEAVLTATYLINRI
FT                 PSKALGDCKMTPYELWHNRKPNLKFLRVFGSTVYVHNKIKKGQFDEKSFKA
FT                 ILIGYEQNGLKLWDVIKGKVIVARDVVVDETNMLYSREVKFETDFPKESKE
FT                 RSQQEFLNESKESDQLNFPNDSTECGILNESKECDQFYLPNDSTECGILNE
FT                 SKECDQFYLPNDSTECGILNESKECDQFNFPNESTECEILNESKECEKQNF
FT                 PNESRKRKTDFLNDSKELYIPNESKDCEKADQPDNCREENKDTNIISRKSE
FT                 RLKSKPKVSYKEHDKSFNKFILNAHIMFDKVPNSFDEINFRNDKSDWEEAI
FT                 NTELNAHEINNTWTIIKKPENKNIVDSRWVFSIKYNELGVPIKYKARLVAR
FT                 GFTQKYQVDYEETFAPVARIASFRFVLSLAVQFNLKVHQMDVKTAFLNGTL
FT                 SEEIYMRPPQGVLCGAGHVCKLNKAIYGLKQAARCWFQVFEQALKGFDFVN
FT                 SPVDRCIYILDRGDIKKNIYVLLYVDDVVIATRVMDRMNNFKNYLSERFRM
FT                 TDLNEIKHFIGIRVEMFEDKIYLSQAEYVKRILNKFNMDSCNSVSTPLLNK
FT                 LNYELLNSGEDCDAPCRNLIGCLMYIMLCTRPDLATAVNILSRYSSKNNAE
FT                 LWQCLKRVIRYLKGTIDMKLIFKKNTSFENTLVGYVDSDWGSNEIDRKSTT
FT                 GYLFKMFDSNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKSLLNSI
FT                 NLKLDRPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFSREQIETNEISL
FT                 EYINTDNQLADIFTKPLPAGRFAELRNKLGLLQEE"
XX
SQ   Sequence 4739 BP; 1711 A; 657 C; 952 G; 1419 T; 0 other;
     ataggttatg ggcccagtcc acgccaattt aaataaatta aattaataac aaatagttgt        60
     gaaattagtt ccgcgtgcgt tcttgtgtag ttttttttta tagtgtgtgt gtgtataata       120
     tatacataca tagaaaatgg aaagaaataa gcaacatatt aagccttttt gtggcgagaa       180
     atattctata tggaaattta gaatcagagc tttgtttgct gaattagagg tgctccaagt       240
     agtcgataac ataatgccta acgaagtaga tgataattgg aaaaaggcag agcgatgtgc       300
     aaagagcatt ttaattcaat atttaggcga cgcatttcta aacttcgcgg caggcgacat       360
     ttcggcacgt gatattctga agaagccttg cgtcgcaatt agctgcacgt aaacgtttaa       420
     taacactcaa actctcaagt gaaatgacac tttcgagtca ttttgttact tttgatgaaa       480
     cagtgagtga gttgttaggg gcgggcgcaa aaatggatga gatggacaaa gtggcacatt       540
     tgctgcagac tctaccttca acctataatg gtgtcatcac ggcaatcgaa actttgtcag       600
     atgaaactct atcattagcg tttgtaaaaa ataaattgtt cgactacgag accaaattaa       660
     gaaatgaaag tactgataca agtagtaaag tcatgaaggc agttgtatga aataataaca       720
     attttaataa tcgtaaaacg tttggatcta gaaacacacg gcaaaagata ttatttaagg       780
     gaaaagctag aagtaatatt aaatgccatc actgtggcaa agaagggcac atgaaaaaag       840
     actgttacca gtttataagg ttaaatcaaa acaaagaaaa ttataaacat aataaacaag       900
     ctcagcttgc agcatcgggc cacgggttcg catttatgat gcggaaaatg aaaaagagtg       960
     atcagataaa taatgaactc ggttttatac tcgattctgg tgcaacggat catttgatca      1020
     atgatgactc gctgtacgcc gattgcatcg aactggagca gccaattaaa atcgctgtgg      1080
     caaaagaagg cgagttttta tatgccacta agcgtggaat tgtgcggctg cacaatggac      1140
     acaatatcac actggaggat gtgctctact gcaaggaggc agcaggaaac ctcatgtctg      1200
     tcaagagtct gcaacaggca gggatgtcaa ttaagtttga ctgtggtggt gtctccatat      1260
     caaaaaatgg agtaagtgtt gttaaacata caggtatgtt ggatatacct gtagtcaaat      1320
     tccaagcata cagtgtagat gctaggaaca aaaataatta tcgattatgg catgagaggt      1380
     tggggcatat aagcaatgca aaattgcttg aaataaataa taataattta tttaatgaca      1440
     gtaatcttct tgttaattta aaaatatcag atgaagtttg tgagtcatgt ttaaatggga      1500
     aacaggctag gttgccattt aagcaatcta aagataaaag ttatataaaa cgacccttgt      1560
     ttgtaataca ttcagatgta tgtggcccca ttaaaccagt tacactagac gataaaaatt      1620
     attttgtgat cttcgtagat caatttacac attattgtgt aacctatttg ttaaaatata      1680
     aatcagatgt atttaatgta tttaaagatt ttgtagcaaa gagcgaggct cattttaatt      1740
     tcaagattgt caatttgtat attgacaacg gtagagaata cttgtcgaat gaaatgcgtg      1800
     agttctgcgt taataaagga ataagttatc atttgacagt gccatacacc tcagttgaat      1860
     ggtgtttcgg agcgaatgat aagaaccatt acagagaaag ctcgtgctat ggtaaatggt      1920
     gcaaaattag acaaaagttt ttgggatgaa gctgtgctaa ctgcaacata tctaatcaac      1980
     agaattccaa gcaaagcact tggtgattgt aaaatgaccc catatgagct gtggcacaat      2040
     agaaagccca atttaaaatt tttaagagtg ttcggttcaa ccgtgtatgt gcacaacaaa      2100
     attaaaaaag gtcaatttga tgaaaaatca ttcaaagcta tcttgatagg gtatgaacaa      2160
     aatggactca aattgtggga tgtcattaaa ggaaaagtta ttgttgcaag agatgttgtc      2220
     gtagacgaga ctaatatgct ttattctaga gaagtaaaat ttgaaacaga tttcccgaaa      2280
     gagagtaagg aaagaagtca acaagaattc ctgaatgaga gtaaggaatc tgatcagctt      2340
     aatttcccga atgatagtac ggaatgtgga atcctgaatg agagtaagga atgtgatcag      2400
     ttttatctcc cgaatgatag tacggaatgt ggaatcctga atgagagtaa ggaatgtgat      2460
     cagttttatc tcccgaatga tagtacggaa tgtggaatcc tgaatgagag taaggaatgt      2520
     gatcagttta atttcccgaa tgaaagtacg gaatgtgaaa tcctgaatga gagtaaggaa      2580
     tgcgaaaagc agaattttcc gaatgaaagt aggaaaagaa aaactgattt cctgaatgat      2640
     agtaaggaat tatatatccc gaatgagagt aaggattgtg aaaaagctga tcagccagat      2700
     aattgtcgtg aagaaaataa ggatactaat ataattagta gaaaaagtga gaggttaaag      2760
     tctaagccga aggtttctta taaagaacat gataaaagct ttaacaaatt tatattaaat      2820
     gcccatataa tgtttgataa agttccaaat tcctttgatg aaataaattt taggaatgat      2880
     aaatctgatt gggaggaggc aataaataca gagttaaatg cccatgaaat taataacacc      2940
     tggacaatta taaagaagcc agaaaacaaa aatattgtag acagtagatg ggtattttcc      3000
     attaaatata atgaactagg agtcccaata aaatacaaag ctagactggt tgcaagagga      3060
     tttactcaaa agtaccaagt agactatgaa gaaacatttg ctcccgttgc tagaattgcc      3120
     agttttaggt tcgtactatc attggcagtc caatttaatt tgaaagtcca tcagatggat      3180
     gttaaaacag ctttcctcaa tggtacatta agtgaggaga tatatatgcg gcctcctcag      3240
     ggcgtattat gcggtgctgg gcatgtatgc aaactgaaca aagccattta tgggctcaaa      3300
     caagcagcta gatgctggtt tcaagtattt gagcaagcat tgaaaggatt cgattttgta      3360
     aactctcccg tggatcgttg catatatatt cttgatagag gtgacataaa gaaaaacata      3420
     tatgtattat tatatgttga tgatgtagta atagcgacaa gggttatgga tagaatgaat      3480
     aatttcaaaa attatttaag cgaaagattt agaatgactg acttaaatga gataaaacat      3540
     tttatcggta tcagagtaga aatgtttgaa gacaaaatat atttgagtca agctgaatat      3600
     gtaaaaagaa ttttaaataa atttaacatg gatagttgca attcagtcag tactccatta      3660
     ctaaataaac taaattatga gttacttaac tcaggtgaag actgcgatgc tccatgtcga      3720
     aaccttattg gctgtttaat gtacataatg ctgtgtacac gaccagattt agctaccgct      3780
     gtaaatatct tgagtagata tagtagcaag aacaatgctg agttatggca atgtttaaaa      3840
     agggttatta gatatttaaa gggaactatt gatatgaagc ttatatttaa aaagaataca      3900
     tcatttgaaa atacattagt tggctatgta gactccgatt ggggtagtaa tgagattgat      3960
     agaaaaagta caacgggtta tttgtttaaa atgttcgatt ccaatttaat ttgttggaat      4020
     acaaaaagac agaattcagt ggcagcttca tcaactgaag ctgaatatat ggccctattt      4080
     gaagctgtaa gagaagcttt atggctaaag tctcttctaa atagtattaa tcttaaactc      4140
     gacagaccca ttaaaattta tgaagacaac caaggctgta ttagcattgc aaataatccc      4200
     tcatgtcata aaagagcaaa gcatattgat ataaaatatc atttttcaag agaacagata      4260
     gaaactaatg agatttctct tgagtatatt aatacagaca accaacttgc tgacatattc      4320
     acgaagccac tacctgctgg aagatttgcg gaactgcgga acaaattagg actactacaa      4380
     gaagaatgat tccaatttaa tgaaaacatg aacatgaagc tttattaacg aatttattac      4440
     attaattcat atttaatttt tttttttttt tttttttttt atttgaacca aaagaaccaa      4500
     tgaattgtta aagtaattta attttatgtt aatttaattt taaagtgatc tgatcgggtt      4560
     tttctgggtt ttccccgtat ccttagagca aatgctagat cacataacac ttcccagaat      4620
     gcacaccaac cacattagaa taacaattga atgttacctt tttgatttaa tgatgaaaac      4680
     tttttttata ttttttattt ttatgatttt gataattaat gttatttttg aggggggcg       4739
//
ID   Copia-1_DPer-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   super_0;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DPer_;
KW   Copia-1_DPer-LTR; Copia-1_DPer-I.
XX
NM   Copia-1_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_0; Positions 11767041 11766797.
XX
SQ   Sequence 245 BP; 81 A; 42 C; 38 G; 84 T; 0 other;
     tgttggaata cgcctattcc cacattcaaa taataacatt aaataatatt atcgatatgt        60
     taggtattat tattataagt tagtctggtc acacttgaag tgtcgaccct ctctcttctt       120
     ttgtgatctc aagtgtgtgg accggtgttg cagaaaaagt aatcaagaaa tacataaata       180
     atctttaaag aaaaacataa cttggtactg tcttccgttt actaattgtc atagctagtc       240
     aacca                                                                   245
//
ID   Copia-1_DSe-I repbase;    DNA;    INV; 4014 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DSe_;
KW   Copia-1_DSe-LTR; Copia-1_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4014
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1463-1463 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1460-1990] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..2122
FT                 /product="Copia-1_DSe-I_1p"
FT                 /translation="MSGQGLCAIDKLDGENYAVWSVQMKSVLVHSGMWSLV
FT                 CGRRVKQDGDTAEQGAQFDELDEKALATILLCVKASEINLIKNCASSKEAW
FT                 DKLAAVYKPRGPARKITLFRKLLRLSLSESACVQNYINDFVDIVERLKEID
FT                 MDISEDILTILMLSGLGKKFENFVVAIETREQLPTLSDLKVKIIEEGERQR
FT                 VSSDETELCVQQAFVSRPSGKGDKKNRSAQKKKKNKKCFRCGREGHFIAQC
FT                 KVKDKNDEIETSAKEKSFTMLARVNKNDVLTKSMWCLDSGATAHMCCERSW
FT                 FADIKEHKEKILLAGENYIFSDGVGTVAVKTKNGSVNLKNVLYVKSLQSNF
FT                 ISVAKAVEKGYKVIFHKQSAYIKDGRNEVVLQARKAGNLFVVDTSNNRCMY
FT                 LCANDELWKWHYRYGHLNMASLKKMASDNMVNGLKSIKNVVDIDRIACETC
FT                 AKGKICVKPFPKMAENRADKVLGLVHSDICGPMNKVSAGGARYFVTFIDDY
FT                 SRYMFVYFLKTRDELLPTFKNFVAFAEKQTGEKLKAIRSDNGREYISHEFQ
FT                 KFLSENGIKRQLTVPYTPQQNGVAERANRTLVEMARSMIIHSGVNESLWGE
FT                 AVRTAAYLRNRSETRSLKSQTPFELWTGKKPSISHLKIFGCKAIALNKKHA
FT                 GKFKPKGIECMTIGYSTKRRPTD"
XX
SQ   Sequence 4014 BP; 1344 A; 655 C; 992 G; 1023 T; 0 other;
     tttcaaatag gttatgggcc caggagtagt aaagacttta ataattgtgt gtgatcaaga        60
     ggaaaataat tattgtatat aattagcttg aacatttttt ataaacatga gcggacaagg       120
     gctgtgtgcg atcgacaaat tggacggcga aaattacgca gtatggtcgg tgcaaatgaa       180
     gagtgtattg gtgcactcgg gtatgtggtc gttggtgtgc ggaagacgcg tgaagcagga       240
     tggtgataca gctgagcaag gagcccaatt cgacgaacta gacgagaaag cactagcaac       300
     aatattgctg tgcgtgaagg cttcagaaat taatttgatt aaaaactgcg ctagttctaa       360
     agaagcttgg gacaagcttg cagctgtgta caagcctcgt ggacccgcca ggaaaattac       420
     cttgttcagg aaattactcc ggttgagttt gtcggaaagt gcgtgcgtac aaaattacat       480
     aaatgatttt gtggatatcg tcgaaagact gaaagaaatt gatatggaca tttctgaaga       540
     tattcttact attttgatgc tgtcgggact cggtaagaaa ttcgaaaatt tcgtggtagc       600
     gatcgaaacg cgcgaacagt taccgactct ctctgattta aaagtaaaaa ttatagaaga       660
     gggagagaga caaagagtga gttcggacga aacggaactt tgtgtgcagc aagcgtttgt       720
     gtcgcgtccc agtggaaagg gagacaagaa aaatagatcg gcgcaaaaga agaagaagaa       780
     taaaaaatgc tttcgatgtg gtcgcgaggg tcactttatt gcgcagtgca aagtgaaaga       840
     caaaaatgat gaaatagaaa catctgcaaa agagaagtcg tttactatgc ttgcaagagt       900
     aaataaaaat gacgttttaa cgaaatcgat gtggtgcttg gacagtggag caactgctca       960
     catgtgttgt gaaaggtcgt ggttcgcgga cattaaagag cataaagaga aaatattact      1020
     tgcaggagaa aactatatat tttcggatgg cgtcggtacg gtggccgtta aaacaaagaa      1080
     tggttccgtt aatttgaaaa atgtgcttta cgtaaaaagc ttgcaaagta atttcatatc      1140
     ggtagcgaaa gccgttgaaa aggggtataa agtgattttt cacaagcaaa gtgcgtatat      1200
     aaaggacggt cgaaatgaag tagtgttaca ggcaagaaaa gctggaaatc tttttgttgt      1260
     tgatacttcg aacaatcggt gcatgtactt gtgtgcaaat gatgaattgt ggaagtggca      1320
     ttatcgttat ggtcatttga acatggcgag cctaaaaaag atggcaagtg acaatatggt      1380
     caatggctta aagtcaatca aaaatgttgt ggacatagac cgaattgcat gtgaaacctg      1440
     tgctaaaggt aaaatctgtg tgaaaccatt cccaaaaatg gcagaaaatc gtgcggacaa      1500
     agtgctaggg ctagtgcatt cggacatttg cgggccaatg aacaaagtat ctgccggtgg      1560
     agcaagatat ttcgtaacat ttattgatga ctattcgcgt tatatgttcg tatatttttt      1620
     gaagacccgt gatgaattgc ttcccacgtt taaaaacttt gtcgcgtttg cagaaaaaca      1680
     gaccggtgaa aaacttaaag caattcgcag cgataacggt cgcgaatata taagccacga      1740
     gtttcagaag ttcctatctg aaaacggtat caagcggcaa ttgacagtac cgtacactcc      1800
     gcagcaaaac ggggttgctg agcgcgctaa ccggacgctt gtggaaatgg caaggagcat      1860
     gattatacat tcaggagtga atgagtccct gtggggagag gcagttagga ctgcagcata      1920
     tctacgcaac agatcggaga caaggtcgtt gaagagtcaa acaccattcg aactgtggac      1980
     aggtaaaaag ccttcgatat cgcatttaaa aatctttgga tgcaaagcga ttgcattgaa      2040
     taagaaacat gcaggaaagt tcaagccaaa aggcattgaa tgcatgacga tagggtattc      2100
     aacaaagcga aggcctacag attaatgcgc attggatcga accgggtaat cgaaagtaga      2160
     gacgtcgttt ttctagagga aactataggg tatccgaaga atggaaacag cgagaacgag      2220
     acggcactta ttgacgaaat tggagttgat tgttcgcaga ttttggcagt ggacaacaac      2280
     aaagaagatg ctgaggtgct cgaggaagag caaattgaca gcgagattaa tgaagccgat      2340
     agttctgatg tttacgagag tgcgaagagc gatgataccg aagaacggga aattcatggt      2400
     cctggtcgcc ctaagaagat aaaaactgga aagcccgggc gtccacgaaa acaatacaac      2460
     ttgttgaaca tgatgaaggt tcaagatgtc aaggtacctg ttacgtttgc tgaagagacg      2520
     cagtctgaaa tgagtcaaga gtgggtagca tcaattcaga aggagattga cgccctcgaa      2580
     gctaatcaga catgggagct acaggactta ccagaaggta agaaagccat cggtagtaag      2640
     tgggtttttg gcatcaaagg agataaggat ggcaatgtga tgcgatttaa atcgaggttg      2700
     gtggctaaag gatatggtat cgactttttt gaaacgtttt caccagttgt cagatattcg      2760
     tcggtgagac ttattatatc tctggctgtt gagcataact tatttctaca tcagatggat      2820
     gtatcgacag cttacttaac tagcgaatta agcgaagaag tctatatgaa cattatggaa      2880
     aagttttgag actaaagaag tcactttacg gactaaaaca gagcggtaga gagtggaacg      2940
     ccaagctcaa cgaagtcttg caaaaactgc attttgttcc ctgtgccagc gagccgtgtg      3000
     tgtacacacg caatgagaag gacaatatta atataattgc agtatatgtc gacgatcttc      3060
     ttattgcaag ctcatgtaaa gatgatttga ttggtataaa agagtcaatt gccaaagagt      3120
     ttaaagtagt agatagcgga cagcttaatc atttcttggg catcgaagtt gagcgagaag      3180
     gtgaaactgg agccatatcc ataggtcaca agacatatat cgagagtatg ctacacacct      3240
     ggggcatgtt agattgcaaa tcggtagcaa cgcctttgga ggcaaatttc caagttaagt      3300
     gtactgatcc taactgcaag cctattaacg aaaaggacta ccagtcactt ataggatcac      3360
     taatgtattt ggcaattaca accaggccag atataatgca ttcagttgca aaactggctc      3420
     aaagaaatgt gaacccacat aaggagcatg aagtcgctgc caagcgtata ctaaggtatt      3480
     tgaagggcac ctcaaactta aagcttcatt atcacgcaac aggtaaaccg attcatggct      3540
     acgtcgacgc agattgggca aatgacacat cggatcgtaa atcctacagt ggatatgtct      3600
     tcataaacgc agctggtcca atatcctggg agtccaagaa gcaaagtctg gtggcattat      3660
     ccagcacgga ggccgaatat gttgcattgt ccattgcagc aagagaagca gtatttataa      3720
     aaaagtttct gaaggaaatg ggttttttga tagatcactc aattttaatt ttttgcgata      3780
     atcagagtgc tttatgttta gctaagaatc cagtattaca taatagaagt aagcatatcg      3840
     acataaagta ccactatgtt agggaacttt attccaaaaa ggaaattgat gtaaaatata      3900
     tatgtacaaa cgacatgtta tcagatattt taacaaaaaa cctacagaaa aacaagcact      3960
     taaaatgtat aactgaaatg aattgtttct gaatatgttg ttgagaagga gtat            4014
//
ID   Copia-1_DSe-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DSe_;
KW   Copia-1_DSe-I; Copia-1_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-206
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1464-1464 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 206 BP; 64 A; 41 C; 27 G; 74 T; 0 other;
     tgaaatacta aaatattatg tatgttaatt tggcaacaac tatatactga aagttggtca        60
     cactgatctg aataagttct ttttgttttt ctggaaactt ccttcttctt gtgttaactt       120
     ccaaacgact cacaacggtg tcacgcttat gtcaaataaa acagttatta aactttaact       180
     aaatcgcctc gcgttttact ccacca                                            206
//
ID   Copia-1_DSim-I repbase;    DNA;    INV; 4105 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.08, Created)
DT   02-NOV-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DSim_;
KW   Copia-1_DSim-LTR; Copia-1_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4105
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1487-1487 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1494-2024] - Integrase core
CC   'ATAA' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..2363
FT                 /product="Copia-1_DSim-I_2p"
FT                 /translation="MSITVNIDKLDESNYDIWSMSMRSVLIASDLWDAVCG
FT                 SVKEPDDAPEPTKWNTKDAKALSSIILHLKPSQMMHIKSCVTAKEAWNILE
FT                 KIHKPVGPLIQMQLYQKLIRLKMKQGDNVTDYVNSFVEICGKLEELDILLG
FT                 DNLKVIMLLTGLPKSFENFVVAMQTRDNSPPFSTVKLKLLEEAERLRVNEE
FT                 CEEVFEKRAYVTRVEQSTSKSNTKNNGSYERRQKQSVKSFECWSCGQRGHK
FT                 AVNCRERKTENNKKQRSYSAVCYGSSVSEMSRGTWCLDSGATAHLCCERDI
FT                 FSEFKEHKERILLAGNNCIESVGRGTVIVKWREFEIKLVDVLYVQELQYNF
FT                 MSVSKAIEKGFCVKFSEKGASVIENDGTVILKAEKRENLFLFENAKNKCYN
FT                 AQNKNSSQLWHNRFGHLNFRSLNKMIKENMVKGMKLNFNENIACESCAKGK
FT                 ISVKHFPKASENRAKEILGLVHTDICGPINKKSNGGARYFVTFIDDKSRYV
FT                 TVYFMKTRDEVFEKFKEYKSFVENQTGKKLKILRNDNGREYLSGLFEQFLI
FT                 NHGIKRQLTVPHTPQQNGVAERANRTLVEMARTMLLCAGLDESFWAEAIKT
FT                 ASYLRNRAETTTLPGLTPFEVWTGRKPYVGHLRVFGAKAIVLNKTHKTKFA
FT                 PKGEEHILVGYSETAKAYRLYSHEKRKMIEARDVMFFEDDLGRSGLPGETE
FT                 LKLVELQGKSTLVVGELSNNPPNVEPEAGDDELASIE"
FT   CDS           2852..3838
FT                 /product="Copia-1_DSim-I_1p"
FT                 /translation="MDVSSAYLNSELHDVVYMRQPEGFIDEQFPRRVLRLH
FT                 KSLYGLKQSGREWNERLNAVLLEIGFTPCPSEPCLYVRKVDDNLGLIVVYV
FT                 DDLIIASSNKDDLNEIKLLISKKFDVVDGGDLKHFLGMEIERESETGSIKI
FT                 GHKQYVETLLNDYGMQNCKPSSIPLEAGHQIKCDDEGCDRVNKESYQSLIG
FT                 SLLYLAMTTRPDILHSTVKLAQRNADPHKEHEAAAKRILRYLRGTSEKKLH
FT                 YRRTGQSIHCYVDADWAGDSSDRKSYTGWAFFAAGAAFSWESKKQSIVALS
FT                 STEAEYIALSSAAKEAVYIRKLVAEMGFGDVKTGADL"
XX
SQ   Sequence 4105 BP; 1313 A; 719 C; 1025 G; 1047 T; 1 other;
     ataaacctct gccctgtaaa cacgtttaat aggttatggg cccagacaca agtttggtgc        60
     ggtaactcga gtggatttgt ctttacgaaa aagaagattc ggaaagtgac tattaaaagt       120
     gaatttgtct ttacgaaaaa agaaaattca aaatgagtat tacggtcaac attgataagc       180
     tcgatgagag caattatgac atttggtcaa tgtccatgcg tagtgttctg atagcttcag       240
     atttatggga cgcggtatgt ggtagtgtga aggaacccga tgatgcgcca gagcctacga       300
     aatggaacac taaagacgcg aaagctctgt cgagcataat tttgcatcta aaaccgtccc       360
     aaatgatgca cattaagtcg tgtgtgactg caaaggaagc gtggaacatt ttagaaaaaa       420
     tacataagcc ggtcggaccg ttaattcaaa tgcagctcta tcaaaaactc attcgcttaa       480
     aaatgaagca aggtgataat gtgacagact atgtgaattc atttgtagaa atttgtggaa       540
     aattggaaga actcgatatt ttactaggtg ataacctaaa agtgattatg ctgctaactg       600
     gacttccaaa aagctttgaa aatttcgtag ttgccatgca aacacgcgat aattcgcccc       660
     cgttttcaac tgtaaaattg aagcttctcg aagaagctga acgacttagg gtgaacgaag       720
     agtgcgaaga agttttcgag aaaagggcat acgtgactcg ggttgaacag tctacctcga       780
     agagcaatac gaaaaataac ggttcctacg aacgacgtca aaagcaaagt gtaaaatcgt       840
     ttgagtgctg gtcgtgtggg cagcgcggcc acaaagctgt taattgtaga gaaagaaaaa       900
     ctgaaaataa taaaaagcag agatcatatt ctgcagtgtg ttatggctca agtgtgagtg       960
     aaatgtcgcg aggtacatgg tgtctcgata gtggagccac tgctcatttg tgttgtgagc      1020
     gagacatttt ttcggaattt aaagaacata aagagcgtat tctattggcg ggaaataact      1080
     gtattgagtc cgttggccgt ggcacagtga ttgtgaaatg gcgcgaattc gaaataaagc      1140
     tggttgatgt tctttatgta caggaacttc aatataattt tatgtcagtg tcgaaggcga      1200
     tcgaaaaagg tttttgcgtg aaattctcag aaaaaggcgc gagtgtaatt gagaatgacg      1260
     gaactgtaat actaaaggca gagaaacgtg aaaatttgtt tctgtttgag aatgccaaga      1320
     ataaatgtta caatgcgcaa aacaaaaatt catcgcaatt atggcataat agattcggac      1380
     atctaaattt cagaagcctt aataaaatga taaaagaaaa tatggtgaaa ggcatgaagt      1440
     taaattttaa cgaaaacatt gcctgtgagt cgtgtgcaaa aggcaaaatt agtgtaaagc      1500
     attttccaaa ggccagtgaa aatcgcgcaa aagaaattct gggtctagtg cataccgata      1560
     tttgtggccc gattaataaa aaatcaaatg gtggtgcacg ttactttgtg acctttattg      1620
     atgacaaatc cagatacgta acggtgtatt ttatgaaaac gcgagatgaa gtttttgaaa      1680
     aatttaaaga atacaaatca tttgttgaaa atcaaacggg taaaaaattg aaaatcttga      1740
     gaaatgacaa tggtcgtgaa tatttaagtg gcttgtttga acagtttctt attaatcatg      1800
     gcattaaaag gcagctaaca gtgccgcaca ccccccaaca aaatggtgta gcggagagag      1860
     caaacagaac attagtggaa atggcccgta ctatgttact gtgtgctggc cttgatgaaa      1920
     gtttttgggc tgaagcgatc aagacagcat cctacttgag gaaccgtgca gaaacaacaa      1980
     cgttgcctgg tttaactcct tttgaggtat ggacaggaag aaagccatac gttgggcacc      2040
     tccgtgtctt tggtgccaaa gccatcgtgt tgaacaagac acataagacg aagtttgctc      2100
     cgaagggtga ggagcatata ctggttggct actccgaaac ggcaaaggcg tatcgactgt      2160
     atagccatga gaagaggaag atgatcgaag cgcgggacgt catgtttttc gaagatgact      2220
     tgggcagaag tggcttgcct ggtgaaacgg agttaaaatt ggttgaactc caaggcaaat      2280
     ctacgcttgt ggttggtgag ttgtctaata atcctcctaa tgtggagcct gaggcaggcg      2340
     atgacgaact agcaagtatt gaasaagagc cagaagacgt ggatccgaaa aacgagcagc      2400
     ttgaagaaaa agaagcacaa agagctccgg gacgaccgaa gctagtgcga tctggtctcc      2460
     caggacgacc tcgcaaagaa taccagatgc tgaatgtcct gacgactgag gacattgctg      2520
     ttcctggaag ttttgaagaa gctatgaacg gtgatcacag cgataaatgg aaagcttctg      2580
     ttcagaagga gatggatggc ctgcgagcaa acaaaacttg gtcactggtt gacctaccga      2640
     aaggcgagaa gactattggt tgcagatggg tctttgcgtt aaaacgagac aagaatggcc      2700
     acatcgaacg cttcaaatcg agactggtgg ccaaagggtg cgcacagcgc cagggtatta      2760
     attatttcga aactttttct cccgttgcca ggtactccac aataagattg gtcatcgcat      2820
     cggcagttga acatggcatg ttcatgcacc gatggacgtt tcttcagcgt acctaaatag      2880
     cgaattacat gatgtggtgt acatgaggca acctgaaggt tttatagatg agcagtttcc      2940
     gagacgcgtt ctgagactcc acaaatcact gtacggcctt aaacagagtg gacgcgaatg      3000
     gaacgagaga ctgaatgccg tgctattgga gattggtttc actccttgtc ctagtgaacc      3060
     ttgtttgtac gtgcgcaaag ttgatgacaa tctgggtcta attgtggtgt acgtggatga      3120
     cttgatcata gcgagctcca acaaagatga cctaaacgag atcaagttgc ttatctccaa      3180
     gaagtttgac gtggtcgacg gcggcgatct taaacatttc cttggcatgg aaattgagag      3240
     agagagtgaa actggaagta tcaaaattgg ccacaagcag tatgtggaga cactccttaa      3300
     cgattatgga atgcaaaatt gtaagccaag cagtattcca ttggaggctg gccatcagat      3360
     aaaatgcgac gacgagggat gtgatcgtgt gaataaggaa tcttatcagt cattgattgg      3420
     gtcccttctg tatctggcga tgacgactcg accagacata ttgcattcta ctgtgaagtt      3480
     ggcacagcgg aatgcagatc ctcataagga gcacgaggcg gctgccaagc gtatcttacg      3540
     ctacctgagg ggcacttccg agaagaaact acactacaga agaactgggc agagcattca      3600
     ctgctacgtg gatgcagact gggctggcga ttcttcagat cgcaaatcat atactggatg      3660
     ggcgtttttt gctgctggtg ctgcctttag ttgggaatcc aagaagcaaa gtattgtagc      3720
     tctgagcagc acagaggccg aatatatagc tctctcctcg gctgccaaag aggcggtcta      3780
     tatcaggaag ctggttgccg aaatgggttt cggagatgtc aagactggtg cagatctata      3840
     gcgacaacca aagttcgcaa tgcttagtta aaaatcctag gttccatgca agaagcaaac      3900
     acattgacat taagtatcat catgttagag atatatataa ggataaaatt gtaagtatta      3960
     gttatgttcc cactgaagac atgatagcgg atgtgttaac aaagaactta agtagaatta      4020
     agcataatag atttattaag ctaatgggaa tgttttgagt gaatatgtaa acatacaacg      4080
     ttgagaagga gtgttgaata tataa                                            4105
//
ID   Copia-1_DSim-LTR repbase;    DNA;    INV; 191 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.08, Created)
DT   02-NOV-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DSim_;
KW   Copia-1_DSim-I; Copia-1_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-191
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1488-1488 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 191 BP; 55 A; 37 C; 36 G; 63 T; 0 other;
     tgaacatata tgtataaaga acaacgatgt atgtgtataa gaaacttgtg tactcaaaca        60
     ctcaagttgc ctgcgagcaa cggttaattc ctttttgagt gttttcgcca ctaatcggcg       120
     atcactcttt gttcgcatat tttgacgctg cctgtgtgca gcaagtatac ataatttgaa       180
     ttcagttacc a                                                            191
//
ID   Copia-1_DTa-I repbase;    DNA;    INV; 4177 BP.
XX
AC   AFFI01006449;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DTa_;
KW   Copia-1_DTa-LTR; Copia-1_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4177
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006449; Positions  117865  122041.
XX
CC   Positions [1534-2067] - Integrase core
CC   'AATTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           532..2169
FT                 /product="Copia-1_DTa-I_1p"
FT                 /translation="MLKSLILLKMQNGDDMHSHLQKFFDNLDKIREMDMQV
FT                 MDDLVTILLLYSIPEEYEQFRVAIETQDKLPEPEVLKTKMMEEYEARKRNN
FT                 VEPVHDAMFTRKNYKFAPNTNTNFKFKCFNCGKVGHKAKDCKEGNQKEKEY
FT                 SGEPKSNSAVAMQVFADKGQWCLDSGATSHMCFQKDKFENIKSESLNLKLA
FT                 NNESAPVVGSGKVLLETSIVTASLEETLYVPQLRSNLMSVSKITDHGFEVT
FT                 FRREGAVISDPKTGNMIATAHRKSNLYFINQCREKCNAVSTVSKDSDLQKW
FT                 HEVLGHINEVDLKSMIRNEKVIGIKLNLNENMKNCEICIQGKQSKKPFTKS
FT                 DSKSSDLLELVHSDVCGPMRVKSHGSSRYFVTFIDDKTRWCEIYFLKQKSE
FT                 VIEKFKEYMHLVENQTGRKIKTLRTDNGKEYVNNEFSIFLKERGIKHELTN
FT                 DYTPEQNGVAERKNRTLIEMGRCMMLQSGLPPSFWAESILTANHVRNRVPS
FT                 RSLNGEIPYNLWTGKKPILTYLKVFGTVAYMLDKQPGRGKFHPKSKKCIL"
FT   CDS           2160..4139
FT                 /product="Copia-1_DTa-I_2p"
FT                 /translation="MYLIGYEPQTKGYRLWCPAERKTYKSRDVRFLDQFEE
FT                 ESQYEDFVDQDHVEMQKIEINLLQVPSTAEPESSPKLENKLEVPEMAVPRP
FT                 ETPTARTQLPALATTPKRGRGRPRKRQITMEESAPDDVQGENSAFLSEQSD
FT                 PKDAAEALSCPDSEEWKAAMLQEYRALDKNETWTLVDRPTNAEIIKTKWVL
FT                 RTKRHANGQIERRKARLVAKGFAQTPGVSYGETFAPVARMSSIRMLMALSV
FT                 ELGMQIQQLDFISAYLNGEITEDVYIEIPNEFEAILSNDDLKKYASNKVCK
FT                 IRKALYGLKQSGRQWYRKLDEKLQSLGLQPLSSDPCVYVINKNDMLVIVLI
FT                 YVDDLMVASNDERALTALKSELAGMFDMKDMGLLKYCLGIEFEQNLEKHEI
FT                 KMHQQCYANEVIKRFGMENSNTVSTPLAANEKLTSSDQEGSPETKDLPYQS
FT                 LIGSLMYLAVCTRPDISHAVSLLSQFNSNFTQQHWTAAKRVLRYLKASEKC
FT                 GLTFKKTGKNIVGYADADWGSNIDDRRSYTGFAFIFANAAVSWESRKQRTV
FT                 ALSTTEAEYMAISDAAKEAVNLKLYLKEILGTQDVVVIFNDNQGAGDLTRN
FT                 PVFHNRTKHVDIRHHFIRELVENNEVIVKYIPTEKMRADVLTKGLSTSKHN
FT                 ECIIGLGMNTK"
XX
SQ   Sequence 4177 BP; 1474 A; 844 C; 956 G; 903 T; 0 other;
     ggttatgatc ccagaacgct taaactgcgc gtaaagtgag agtagtaagg attaagtgga        60
     taatatgtga aaaaccaaat taagtgtatc agaagaacgg aacttgcaat ctatttcaca       120
     atgattcgca acgacgaaga ataggaagag gcaaagacga aaaagacgcc acaaaaactt       180
     tcgggaaacg tgtaacaaag aaatcgtagg acacaaataa aaaatgagtt tcgcgaacat       240
     taaaatagac ccgctcggaa gggataatta tgatacgtag gaaaatacaa atccaagctc       300
     ttttaattaa gagtgatgtg tggaaatacg tgagtggtca gcgtagtagg ccaacaaatt       360
     cccaagaaaa agccttggag tgggacataa atgactctaa agcgaaatcg gatttaattc       420
     tatccatttc cacatctgag ttgaggcagg taaagaactg cgaaacatcg aaacagttat       480
     gggagaaact ggaaagcgta taccagtcaa aaggtccagc gcgtaaggcg catgttgaaa       540
     tcgcttatat tgctaaaaat gcaaaacgga gacgatatgc acagtcactt gcaaaagttt       600
     tttgacaacc tcgacaaaat tcgtgaaatg gacatgcaag taatggatga tctcgtgaca       660
     attctgctgc tttacagcat tccagaggag tacgaacaat ttagagtcgc cattgaaaca       720
     caggacaaat tacctgagcc agaagtgctg aaaacaaaaa tgatggaaga atacgaagcg       780
     cgcaaaagaa acaacgttga accggtacac gacgccatgt ttacgcggaa aaattataaa       840
     ttcgctccaa atacaaatac aaacttcaaa ttcaagtgct ttaattgcgg aaaagtaggg       900
     cacaaggcca aagattgtaa ggaaggcaat caaaaagaga aagaatacag cggcgaaccc       960
     aaaagcaaca gtgcggtcgc catgcaagtg tttgcagaca aaggacagtg gtgtctcgat      1020
     tcaggtgcaa catcgcacat gtgctttcaa aaggacaaat tcgaaaacat taaaagtgaa      1080
     tcgctaaact taaaattagc aaacaatgaa tccgctccag ttgtcggcag tggaaaagtt      1140
     cttctagaaa cttcgatcgt gacggcaagc ctagaagaaa ctctttacgt accacaactt      1200
     cggtcaaatt taatgtcagt gtcaaaaatc acggatcacg gttttgaagt cacatttcgc      1260
     cgcgagggtg ccgtcatttc tgacccaaag accggtaaca tgatcgccac agcacaccga      1320
     aaatccaatc tgtacttcat aaatcaatgc cgtgaaaagt gtaacgcagt gagtaccgta      1380
     agcaaggaca gtgatttaca gaagtggcat gaagtattgg gacacataaa cgaagttgac      1440
     ttaaaaagta tgattcgaaa cgaaaaagtg attggcataa agctaaatct taacgagaac      1500
     atgaaaaact gtgaaatttg cattcagggg aagcaatcga aaaaaccatt cacgaagtcg      1560
     gattcaaaat ccagtgatct actagagttg gtacactcag acgtttgtgg accaatgcgg      1620
     gtcaagtcgc acggaagttc cagatacttc gtaacattca tcgacgataa aaccaggtgg      1680
     tgcgaaatat attttctaaa acagaaaagc gaagtcattg aaaagttcaa ggagtacatg      1740
     cacctcgtcg aaaatcaaac tggcagaaaa atcaaaacgc tacgtacaga caatggtaag      1800
     gaatacgtta ataacgagtt ttccatattt ctcaaggaaa ggggcattaa gcatgaactt      1860
     acaaacgact acacgccgga acaaaatgga gttgccgaac gcaaaaaccg aactctaatt      1920
     gagatgggtc ggtgcatgat gcttcaaagc ggattacctc caagtttctg ggcagaatct      1980
     attctaactg ctaaccacgt caggaacaga gtcccatccc ggagcctaaa tggcgaaata      2040
     ccgtacaacc tgtggactgg aaagaaacca atactcacat acctaaaagt atttggaacc      2100
     gtagcatata tgttggacaa gcaaccagga agaggtaaat ttcacccaaa aagcaagaaa      2160
     tgtatcttat agggtacgag ccgcaaacaa agggatatcg actttggtgt ccagctgaaa      2220
     ggaagactta caaaagccga gatgtcaggt ttcttgacca atttgaagaa gagagccaat      2280
     atgaggattt tgttgaccaa gatcatgttg aaatgcaaaa aatcgaaatt aatcttttgc      2340
     aagttccatc tacagcagaa ccagaatctt cgcccaagtt ggaaaacaaa ctagaagtcc      2400
     cagaaatggc ggtgcccaga ccggaaactc ccacagctcg cacgcagcta cctgcactag      2460
     ccacaacccc aaagagagga cgaggtcgcc ccaggaagcg gcagataact atggaagaga      2520
     gcgctccaga tgacgtccag ggagaaaaca gcgcatttct cagtgagcag agcgacccaa      2580
     aagatgcagc agaggcacta tcttgcccgg atagtgagga atggaaggca gccatgcttc      2640
     aagaataccg tgctctggac aagaacgaga cgtggactct ggtagatcga cctacaaacg      2700
     cggagatcat caagaccaaa tgggttctgc gtacaaaacg acacgccaac ggtcaaatcg      2760
     aaaggcgaaa ggcgaggctt gtcgccaaag gatttgcgca gacacccggt gtaagctacg      2820
     gcgaaacttt tgcgcccgtg gcacgcatga gctccattcg aatgctcatg gccctatcag      2880
     ttgagctcgg aatgcaaatc caacagttgg attttatcag cgcatacctc aacggcgaaa      2940
     taactgaaga tgtctacata gaaataccaa atgaatttga agcgattcta agcaatgacg      3000
     acctcaaaaa gtatgcttca aataaagtct gcaaaatacg aaaggcgctg tatggcctca      3060
     aacagtccgg aaggcaatgg tatcgaaagc ttgacgaaaa gctacaaagt ttgggactgc      3120
     agccactaag ttctgatcct tgtgtgtacg tcataaataa gaacgacatg cttgttatcg      3180
     tattaatcta cgtagatgac ttaatggtgg catcaaatga cgagagggca cttacagctt      3240
     taaaatcaga acttgcaggc atgtttgata tgaaggacat gggattgctg aagtattgcc      3300
     ttggaattga gttcgaacag aaccttgaga agcacgaaat caaaatgcat cagcagtgtt      3360
     atgcaaatga ggtcatcaaa cggtttggta tggaaaactc caatacagtg tcaacaccat      3420
     tggccgcaaa tgaaaaattg acgtcgagcg atcaagaagg atctcctgaa accaaggacc      3480
     taccgtacca aagtcttata ggctcattga tgtatctggc agtatgcacg aggccagata      3540
     tttctcatgc cgtaagttta ctaagccaat ttaacagtaa tttcactcaa cagcactgga      3600
     cagcagcaaa gagggtcctc cggtatctca aggcaagtga gaaatgtgga ctaacattta      3660
     agaagacagg caagaacata gttggctatg cggatgctga ttggggatca aacatcgacg      3720
     acagacgatc atacacaggc tttgcattta tatttgcaaa cgcagcagta agctgggagt      3780
     ccaggaaaca acgcacagtg gcactctcaa cgaccgaagc cgagtacatg gccatatccg      3840
     atgctgcgaa ggaagccgtt aatctaaagt tgtacctgaa ggaaatttta ggtacgcagg      3900
     acgttgtcgt gatctttaac gataatcaag gcgcaggtga cctgacccgt aacccagtat      3960
     tccacaaccg tacaaagcat gtggatattc gtcaccactt cataagagag ctggttgaaa      4020
     acaatgaagt catcgtaaaa tacatcccga ctgagaagat gcgtgccgat gtattgacga      4080
     aaggtttatc tacctcgaaa cacaacgaat gtataattgg tttgggtatg aatactaagt      4140
     aaaatatgaa attgttcaac ataaatttga ggggaag                               4177
//
ID   Copia-1_DTa-LTR repbase;    DNA;    INV; 156 BP.
XX
AC   AFFI01006449;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DTa_;
KW   Copia-1_DTa-I; Copia-1_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-156
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006449; Positions  117709  117864.
XX
SQ   Sequence 156 BP; 54 A; 36 C; 19 G; 47 T; 0 other;
     tgttaaaata taccaaattt aagtatcgat aagaacatat tgtactcatc cccaatcaat        60
     tgttccatcc ctaagtcagt ttgccacaag cgcgtgtgtc gcgcgtatta tcaaataaag       120
     aacatatatt actctcaaat ccctcgttta acaaca                                 156
//
ID   Copia-1_DVir-I repbase;    DNA;    INV; 4151 BP.
XX
AC   scaffold_5826;
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   07-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DVir_;
KW   Copia-1_DVir-LTR; Copia-1_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4151
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (07-MAR-2011).
XX
DR   Genome; scaffold_5826; Positions    4574     424.
XX
CC   Positions [1484-1846] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..1846
FT                 /product="Copia-1_DVir-I_1p"
FT                 /translation="MNMSHQIEKLGEDNYDVWHMAMKSVLVVADLWNVVCG
FT                 KYVKPEGNGEDIEKWVSVDQKAMAYIILNLKPTQLMHIKSCPTSAAVWKKL
FT                 KEIHVSVGPIRKVQLYQKLIRFNMQQGDDVVAYVNSFVETIEKLAELDIKL
FT                 NDELQVIMFLSSLPDTWENFVIAIETRDELPKFEVVKVKMLEEATRKQERA
FT                 SRDGIGTPEAVYTHKHNGPRDNNSVESKGRKNSSKQPFRGKCFNCEKEGHR
FT                 ASDCRNKKKDDKKSQKDEKSLCLMHTCVKEKQKSFWCVDSGATSHMCCDRS
FT                 MFLTYADKKTSIMLAANKFIDSPGSGSVELHCNRIKLKLQNVLYVPDLSMN
FT                 FLSVSAAAKFENSTIFEGKIALIKDKEGNEIIRARHENGLYVYKHSLDQVH
FT                 MLNSSDSSSIKWHNRFGHLNFKDLKLLNDKQLVRGMKVENVQLEINCDTCN
FT                 KAKICALPFPQKANRVSKQVLDLVHTDVCGPMNVKSLAGNRYFVTFIDDYS
FT                 RKIFVYLMHSKSQVFEKFKMFKTFVECQTGNKIKAVRSDNGTEYVNKQFTE
FT                 FLIQCGINRQLTSSLHSRNQMGVS"
FT   CDS           2628..4106
FT                 /product="Copia-1_DVir-I_2p"
FT                 /translation="MQIEYDALQANETWSVCELPPGQKAIGSKWVYRIKRD
FT                 KDGNIEKFKSRLVAQGCGQKFGVNYWETFSPVIRYETIRMLFAIAAEKELY
FT                 MHQVDISNAYLNSKLNETVYMKQPPNFIDKQHPNKVLKLEKALYGLKQSGR
FT                 VWNNTLDEVLRGMDFKRCKNEACLYVKQKQQQFSYIAVYVDDLIIVCPSEE
FT                 DIAVIKKKIASNFKMHDGGPISYFLGMEIQRDGDRGSVSLCQKTHIQGLLD
FT                 KYGMSNCRPVSTPLDPGFQVDCNDDTCVKVNITQYQSLIGSLIYLAVLSRP
FT                 DILHAVNKLSQRNANPHGEHQSAAKHILRYLAGTKNMKLVYRKNGKPLKGY
FT                 ADADWGNDRLDRRSYSGYAFFLAGSAFSWTSSKQSVVALSSTEAEYISLSM
FT                 AAKEAVYLRRLLSEMGWSKDTEPLTICGDNLSAQHIAQNPVHHKRTKHIDI
FT                 RYHFIREKVQCNDIALEYVPTNNNVADILTKCLSKQKHVGFVKTLGLN"
XX
SQ   Sequence 4151 BP; 1427 A; 745 C; 937 G; 1042 T; 0 other;
     ttggttatgg gcccaggtct cgttgttttc ggttaaataa gtacacaaag tgtctatggt        60
     tttgaaagct tccttttgtt aaatttttaa aaagtttatt tcgtgcgaag aataacgtgg       120
     tgaaattgtc aaaatgaaca tgtcgcatca aatagaaaaa cttggtgagg acaattatga       180
     cgtatggcat atggccatga aaagtgtctt ggtggtggcg gacctatgga atgttgtgtg       240
     tggaaaatat gttaagccag aaggaaatgg tgaggatatc gaaaaatggg ttagtgtcga       300
     ccaaaaagcg atggcttaca taattttaaa tctgaagcca acacagttga tgcatatcaa       360
     gtcatgccca acatctgcag ctgtatggaa aaaactaaag gaaattcatg tctcagttgg       420
     accgattagg aaggtccaat tatatcaaaa attaatacgt ttcaatatgc agcagggtga       480
     cgatgtagtc gcatatgtca attcatttgt tgagacaatt gaaaagttgg cagaattaga       540
     catcaaactc aatgacgagt tgcaggtcat catgtttttg agcagtctac cagacacatg       600
     ggaaaatttt gtaatagcga ttgagacacg cgatgagctg cccaaattcg aagtcgtcaa       660
     ggttaaaatg ttagaagagg ccacgcgaaa gcaagaaaga gctagcagag acggcatagg       720
     gacaccagaa gcagtgtata cacacaaaca taatggaccg cgggacaaca acagtgtcga       780
     aagcaaaggc agaaagaata gcagtaagca gccattccga ggcaaatgtt ttaattgcga       840
     aaaagaaggg catcgagcga gcgattgccg aaataaaaag aaggatgata aaaagagcca       900
     aaaggacgaa aagtctctat gcttaatgca cacgtgtgtc aaggagaagc aaaagagttt       960
     ttggtgcgtt gacagtggtg caacatcgca catgtgctgc gaccgcagca tgttccttac      1020
     gtatgctgat aaaaagacgt cgataatgtt ggccgcaaat aagtttatcg attcacccgg      1080
     cagtggcagt gttgagttgc actgcaatag aataaaatta aagctgcaaa atgttttata      1140
     tgtccctgac ttaagcatga attttttatc agtaagtgct gcagcaaagt ttgagaattc      1200
     taccatattt gaagggaaaa ttgcgctgat aaaagacaaa gaaggcaacg agataataag      1260
     ggcaagacac gaaaatggtt tgtatgttta caaacatagt cttgatcagg ttcatatgct      1320
     aaatagttct gattcatctt ccataaaatg gcacaataga tttggccacc tgaattttaa      1380
     ggatttgaaa ttgcttaatg ataagcaact ggtgcgtggt atgaaagttg aaaatgtaca      1440
     attagaaata aattgcgata catgtaataa agcaaaaatt tgtgcattgc cattcccaca      1500
     gaaagcgaat cgtgtctcaa agcaagtact ggacttagta catacagacg tatgtggtcc      1560
     gatgaatgtt aagtcgcttg caggcaatcg atatttcgta acttttattg atgactactc      1620
     acgcaagata tttgtttacc ttatgcactc aaaaagccaa gtttttgaaa agtttaaaat      1680
     gtttaaaact tttgtagaat gccaaacagg aaataaaata aaggctgtgc gcagcgacaa      1740
     tggaacagag tatgtgaata agcaattcac tgaatttttg atccagtgcg gaataaacag      1800
     gcaattaaca agttccttac actcccgcaa ccaaatgggt gtgtcctaac gtgccaatcg      1860
     gaaccatcgt tgaaatgggc caaaaacctc ctatttcatc aaaatcttaa taatttttgg      1920
     gggcagaggc tgtgcaaaca gcagtttatt tgcgcaacag atgtcccaca aaagcataga      1980
     tgggaagcac accatttgag gtatgaaagg atcgcaagcc atcagtacag cacttgagag      2040
     tatttggctc gcgggcattt gcactcgaca aagtcagaaa aagcaagttc caagcaaagg      2100
     gcaaggagta catttttgtt ggttactcct ttacagcaaa ggcatatcgc ctatatgatc      2160
     gcgagaagcg aacagttatt gaaagaaggg atgtcaaatt cattgaaggt gagtttgaca      2220
     tagcaacaac tgatgcatgc agtatttcag acagaaacac cttcacgacg tacattatcc      2280
     cgtttgagtc aaatcatgag gttgcaaaaa accacccaga gcaacctgcc gaggtgcaag      2340
     agtacaacag tgactcaaat gaagaagaag aggaggattt tgtgagcgca agcgatccag      2400
     gagaagatgg caacgatgac gacaatgacc aagtagcgct gccacaagtt gaagctgtag      2460
     taaaacatgg gcgtggcagg ccaaaaatta tacgtacagg tcagccaggc aggcccagaa      2520
     agcagtacca attgatcaat agtcttaatc agattgaaga cattgaaact ccgcagtcag      2580
     ttgcagaagc attacatggc caaaatgcgc aggattggga aaagtctatg caaatagagt      2640
     acgacgcttt acaagcaaat gagacatggt cagtgtgtga gctacctcct ggacaaaagg      2700
     ccattggttc aaaatgggtt taccgaatca agagagataa agatggtaat attgaaaaat      2760
     ttaagtctcg actagttgca caaggttgtg gtcaaaaatt tggtgtcaat tactgggaaa      2820
     cgttttctcc cgtaattcga tatgaaacca ttcgcatgtt attcgcaata gctgccgaaa      2880
     aagagctgta tatgcatcaa gtcgacattt caaacgcata cttaaatagt aagcttaatg      2940
     aaactgtgta catgaaacag ccgccgaatt ttattgacaa gcagcatcca aataaagtcc      3000
     tcaaactaga aaaggcactt tacgggctta aacaatccgg acgagtttgg aacaatacgc      3060
     tcgatgaggt attgagaggc atggatttta aaagatgcaa aaatgaagca tgcttatacg      3120
     tcaagcaaaa gcaacaacaa ttcagctaca tcgctgtcta cgtcgacgat ttaatcatag      3180
     tgtgtcccag cgaagaagac atagccgtga ttaagaagaa gattgcatca aattttaaaa      3240
     tgcacgatgg aggccccatt agctatttcc taggcatgga aatccaacgc gacggcgatc      3300
     gaggttccgt ttcgctgtgc cagaagacgc acattcaagg cctattggac aagtatggca      3360
     tgagcaattg ccgtccagta agcacacctc ttgacccagg ttttcaagtg gactgcaacg      3420
     acgatacttg tgtaaaggta aatataacgc aatatcagtc attaattggt tcgcttatat      3480
     acttagcagt tttgagccga ccagacattt tgcatgctgt aaacaaatta tcacaaagaa      3540
     atgctaatcc tcatggagaa caccagtctg cagcaaagca cattctaaga tatcttgcgg      3600
     gtacaaagaa tatgaaatta gtataccgta aaaatggcaa accactaaaa ggctatgcag      3660
     atgcagattg gggcaacgat cggctggaca ggagatccta tagtggctac gcatttttcc      3720
     tggcaggcag tgcgttctct tggacttcat caaagcaaag cgttgtcgca ttgagcagca      3780
     ctgaagcaga atatatttct ttgtccatgg ctgccaaaga agcagtttat ctacgcaggc      3840
     tacttagtga gatgggatgg tcaaaggata cagagccgtt gactatatgt ggcgacaacc      3900
     taagcgcgca acatattgcg caaaatccag tccatcataa gcgcactaag cacatagaca      3960
     taaggtatca ttttatacgt gaaaaggtac aatgtaatga tattgcatta gaatacgtac      4020
     ctacaaataa taatgttgca gatatactaa caaaatgttt aagtaagcaa aagcacgtag      4080
     gctttgtaaa aacacttgga ttgaattaaa tttgttattt tgcaactgat tataattagc      4140
     ttaagaagaa g                                                           4151
//
ID   Copia-1_DVir-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   scaffold_5826;
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   07-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DVir_;
KW   Copia-1_DVir-I; Copia-1_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (07-MAR-2011).
XX
DR   Genome; scaffold_5826; Positions     423     229.
XX
SQ   Sequence 195 BP; 57 A; 36 C; 31 G; 71 T; 0 other;
     tgttaaaata gtgacaataa gctgttaagc ttctttataa tctggcaaca ttgtatcagc        60
     atagtactca ttctgtaatt gagtacttgt tcagattttt ggactcatgc ttggaagttt       120
     ccattaaaca tttaaccgaa ccactacgtg tgttttcttt atgtgcatct taggcacact       180
     agaaatttcc caaca                                                        195
//
ID   Copia-1_DWil-I repbase;    DNA;    INV; 4043 BP.
XX
AC   scaffold_180634;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DWil_;
KW   Copia-1_DWil-LTR; Copia-1_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4043
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_180634; Positions   10964    6922.
XX
CC   Positions [1445-1954] - Integrase core
CC   'AATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..1596
FT                 /product="Copia-1_DWil-I_1p"
FT                 /translation="MSSFYQTEKLEEGNYDSWSVQMRSVLIHAELWNSIGM
FT                 TRPTEANAVAAWDAQNQKALATITLSVRPSQLVYLKNCATAKEAWDKLKET
FT                 YEPSGPVRRVSLYKKLLGLQLKEDKMSDYLNMFFSTKDKLAEVNIKLEDEL
FT                 AVIILLSSLPKEYENFVIAMETRDSLPSLDSLRIKLLEEGDRRSNERMSNP
FT                 EEQRAYQANVRKNPIRKKRSLVDIECYSCGQRGHYKRDCPKFQEKPKENRQ
FT                 SQHRSYTILAAAQAGNLDASSWCVDSGATAHLCGRRSMFANYVAHEEDVVL
FT                 ANNHVIKAVGRGDVLVQTGFCELKLENVLHLPGLETNFMSVDRAVDRRCTV
FT                 TFDKNSATVRQDDEMVLIAERQGKLFVFKETGNRCFGAKQISAEDWHYRYG
FT                 HLNYSSLMNIVKRRMVTGMENVDFSEKMPCVTCMRSKIHTQPFPSASEHRA
FT                 QHLLELVHTDVCGPFKQRSRRFFIFFDIHRRHVETNICLLSKIEG"
FT   CDS           1490..3997
FT                 /product="Copia-1_DWil-I_2p"
FT                 /translation="MYVDLLSNVLGGSSYFLTFIDDMSRRIFAYCLKSKDE
FT                 VFEKFVEFKEMAERQTGQKLRAIRSDNGREFINRRFDRYLKDPGIVRQLTV
FT                 PYSPQQNGVAERANRTLVEMARCLLVHADMQEFLWAEAIMTACYIRNRPPT
FT                 AALVGMTPYEAWTGRKPNVQGMHIFGSIAVALDKTRRSKFQAKGREYRLVG
FT                 YSLVSKAYRLYDKEKREVVEKRDVMFKDPNDVVSIVESPGPAQTVTGLEMR
FT                 WDESSKDDLENEEFVSAEDFEDESSGQSDDESCQAEEQEPEQEIRQEGQIG
FT                 PGRPRLNRTGKPGRPKKIYNRVNKLHVKELDLPQTFDDAMQGKQSSFWKTA
FT                 MDKEYEALLANKTWTLADLPKGQKAIGSKWVYTIKRSGDGSVERYKSRLVA
FT                 KGCSQIYGVDYTETFSPVCRYETIRLVLAIAAELKLYLHQMDVCTAYLNSD
FT                 LDEVVYMRQPQGYVDKTNSQQVLRLNKAIYGLKQAGRKWNAKLNGALCDLG
FT                 FTSSKNEPCLYQQDIKGRLCLVLIYVDDLLIACQKMDDMIAIKAKIAMKFE
FT                 CVDKGPLREFLGMQVDRNDDTGSIMMNQAQYIKGMLQRHSMEVCRAVATPL
FT                 DAGFQVACSDEKCVIQDVTMYQSAIGELMWLALTSRPDIYHSVIKLAQRNK
FT                 EPHSEHVAAVKHVMRYLAATKDLKLHYRSCGDALTGYADADWGGDVSNRKS
FT                 YTGYVFFLAGGPISWKSEKQCSVALSSTEAEYMAMSSAAKEALHLRRLLIE
FT                 IGCGDAGTSTKLFGYNLSAQSLAKNPVFHARSKHIDIRHHFVREVVTRGEI
FT                 DLDYISTKDMVADILTKNLSKQKHNHCVKLLNLN"
XX
SQ   Sequence 4043 BP; 1250 A; 701 C; 1096 G; 996 T; 0 other;
     ggttatgggc ccagatacac gcgagtgtgg gcaggaggat ttgtgttaaa agtttaagta        60
     gatatttcgc ggctggcgaa aagtaattgt gcggaaagac acacggcata aggcgcgtgg       120
     taaaatatga gttcttttta ccaaacagaa aagttggagg aggggaatta tgattcctgg       180
     tccgttcaaa tgcgcagcgt gttgatccat gcggaattat ggaactccat aggcatgacg       240
     aggcctacgg aagcgaatgc agttgctgcg tgggatgcac agaatcagaa agcgttggcg       300
     acgataacgc tgagtgtaag accgtctcag ttggtttacc tcaagaattg tgctacagca       360
     aaggaagcat gggataagct caaggaaacg tacgagccaa gcggacccgt ccggagggtg       420
     tcgctatata aaaagttgct tgggttgcag ctgaaagagg acaagatgag cgactatctc       480
     aatatgttct tctctacaaa ggacaaactt gctgaagtga atattaagct agaagacgaa       540
     ctagcggtga tcatattact ttcgagtttg ccaaaggaat acgaaaactt cgttattgcg       600
     atggagactc gtgatagtct tccttctttg gacagtctaa ggattaagtt gctggaagaa       660
     ggagatcgca ggagtaacga gagaatgtca aacccagaag agcaacgggc ataccaggca       720
     aatgtgcgaa aaaatccaat tcgtaagaag aggtctctgg tggatataga gtgctacagt       780
     tgtgggcaac gaggtcacta taagagggac tgcccaaagt ttcaagaaaa gccaaaggaa       840
     aatcggcaat cacaacatcg atcgtacact attctagctg cggcacaggc aggaaatcta       900
     gatgcttcga gctggtgtgt ggattcggga gcaacggctc atttatgtgg caggcgcagt       960
     atgtttgcga attatgttgc acatgaggaa gatgttgtat tggccaacaa ccacgtcata      1020
     aaagcagttg gcagaggtga cgtgcttgta caaacaggat tttgtgagct gaaattggag      1080
     aatgttttgc acttaccagg gttggagacg aattttatgt cggttgatcg agcagtcgat      1140
     aggcgatgca ctgtgacttt cgacaaaaat tcagcgacgg ttcgccaaga cgacgagatg      1200
     gtgctaatag cagagaggca aggaaagctc tttgtgttta aggagacagg caatcgatgc      1260
     tttggagcga aacaaataag tgcagaagat tggcactaca ggtatggtca tttgaattat      1320
     tcaagtctga tgaatattgt taaacgcagg atggtgactg gcatggaaaa tgtggatttt      1380
     tccgagaaga tgccatgtgt gacttgtatg agaagcaaga ttcatactca acctttcccg      1440
     tcagcgtctg aacatagagc tcagcatctt ttggaattgg tacataccga tgtatgtgga      1500
     ccttttaagc aacgttctag gcggttcttc atattttttg acattcatag acgacatgtc      1560
     gagacgaata tttgcttatt gtctaaaatc gaaggatgaa gtattcgaga aattcgtgga      1620
     atttaaagag atggctgaaa gacagactgg ccaaaaattg agagcaataa gaagtgacaa      1680
     cggccgagaa ttcatcaaca ggcgttttga taggtactta aaggatcctg gaattgtgcg      1740
     tcagttgacg gttccatata gccctcaaca gaatggagtg gctgaacgag caaaccggac      1800
     gctagtcgag atggctagat gtttgcttgt acacgcggat atgcaggagt ttctctgggc      1860
     agaggcaata atgacagcgt gttacattcg aaacagacca ccaacagcag ctttagttgg      1920
     tatgacacct tatgaggcat ggactggaag gaaacccaat gtgcagggta tgcacatttt      1980
     tggatcgata gcagttgcat tggataagac acgacgaagc aagtttcagg ccaagggcag      2040
     agaatatcga ctcgtaggat attcactggt gtcaaaagca tacaggttgt atgacaaaga      2100
     aaaacgagag gtcgttgaga aacgggatgt aatgttcaag gatccgaatg atgtggtttc      2160
     gattgttgaa tccccaggtc cagcacaaac agtcacaggt ttggaaatgc ggtgggacga      2220
     atcaagtaaa gacgatctgg aaaatgagga atttgttagc gctgaagatt tcgaagatga      2280
     gagttcaggg cagagcgacg atgaatcttg ccaagcggaa gaacaagaac cagaacaaga      2340
     gatacgacag gaaggacaga tcggtcctgg aaggccacgt ttgaatcgca ccggtaagcc      2400
     aggacgtccc aagaaaatat acaatcgtgt aaacaagtta catgtaaagg aactggattt      2460
     gccacagaca tttgatgatg cgatgcaagg taagcaatct tcattctgga agactgctat      2520
     ggataaggaa tatgaggctc tgttggcaaa taagacatgg acactggcag atttacccaa      2580
     gggacaaaaa gcgattggtt caaagtgggt atatactatc aaaaggagtg gcgatggaag      2640
     cgtggagcgg tataagtctc ggttggtggc taaagggtgc tcacagatat acggcgtcga      2700
     ttataccgaa accttctcac cagtgtgtcg ttacgaaacg atacggctag ttttggctat      2760
     agcagcggag ctgaaactat atctgcacca aatggatgtg tgcacagcct atcttaacag      2820
     tgacctagac gaagtcgtct atatgaggca gcctcaggga tatgtggata agacaaattc      2880
     acaacaggtg ttgaggctga ataaagctat atatggattg aaacaagcag gaaggaagtg      2940
     gaatgccaag ttgaatggag ctctatgtga tcttggattc acttcttcca agaacgagcc      3000
     gtgcctttat caacaggata taaaaggtag actttgtttg gtactaatat atgtagatga      3060
     tttacttata gcttgccaaa agatggatga catgatcgca atcaaggcaa agattgcgat      3120
     gaaattcgaa tgcgtcgata agggtccgtt acgagagttt ttgggcatgc aagtagaccg      3180
     gaatgatgat acaggcagta tcatgatgaa tcaggctcag tacataaaag gcatgcttca      3240
     aagacatagt atggaagtgt gtcgagcagt tgctactcca ttggatgctg gtttccaagt      3300
     ggcgtgcagt gacgagaaat gtgtcataca ggatgtgaca atgtatcagt cagcaatcgg      3360
     agagttgatg tggcttgcat taacatcaag acctgatatc taccattcag ttatcaaatt      3420
     ggcgcaaagg aataaggaac ctcacagtga acatgttgca gcagttaagc atgttatgag      3480
     gtatttggcg gcaacgaagg atcttaagtt gcactaccga tcgtgtggag atgctcttac      3540
     gggatacgct gacgcagatt ggggcggtga tgtgagcaac cgcaaatcgt acacagggta      3600
     cgtgtttttc ttggcaggtg gccctatctc ctggaagtca gaaaaacaat gcagtgtggc      3660
     gttgagcagc acagaggccg aatacatggc tatgtcttca gcggcgaaag aggctttgca      3720
     tttgaggcga ttgttgatcg agattggatg tggagacgct gggacatcta cgaaattgtt      3780
     tggatacaat ttgagtgctc aatctctggc caagaatcct gtgtttcatg ctcgatcgaa      3840
     acacattgac atcagacatc atttcgttcg agaagttgtt acaagaggcg agattgatct      3900
     ggactatata tcaactaagg acatggtagc tgatatatta acgaaaaatt tgtctaagca      3960
     aaagcataat cattgtgtca agttattgaa tttaaactaa gaaagtaatt gtaattggca      4020
     cacagaatca tattgaggaa ggg                                              4043
//
ID   Copia-1_DWil-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   scaffold_180634;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DWil_;
KW   Copia-1_DWil-I; Copia-1_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_180634; Positions    6921    6719.
XX
SQ   Sequence 203 BP; 54 A; 41 C; 31 G; 77 T; 0 other;
     tgttgaaaat accatatgtt tctgtttgca gccctgtatt tatccctggt tatatcgatt        60
     gtactaagct tgtaggttat cgatataaga tgctttgtaa ctctgtatat tttggcttct       120
     tcttcctttt ccgcccttga aagtgtacgg acacttaata aagataaact tataatttaa       180
     cgcaatccac tcgatcctca aca                                               203
//
ID   Copia-1_DYa-I repbase;    DNA;    INV; 4336 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DYa_;
KW   Copia-1_DYa-LTR; Copia-1_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4336
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions  929389  925054.
XX
CC   Positions [1933-2274] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..1669
FT                 /product="Copia-1_DYa-I_2p"
FT                 /translation="MSGQGLCAIDKLDGENYAVWSVQMKSVLVHSGLWSLV
FT                 CGRRVKQESDTAEQGAQFDELDEKALATILLCVKASEINLIKNCASSKEAW
FT                 DKLAAVYKPRGPARKITLFRKLLRLSLSESACVQNYINEFVDIVEKLKEID
FT                 MDISEDILTILMLSGLGKKFENFVVAIETREQLPTLSNLKVKIIEGGERQR
FT                 VSSDETELCVQQAFVSYPSGKGDKKNRSAQKNSDAKKNKKCFRCGREGHFI
FT                 AQCKVKDKNDEIETSAKEKSFTMLASVNKNDVLTKTMWCLDSGATAHMCCE
FT                 RSWFADIKEHKEKILLAGENYIFSDGVGTVAVKTKNGSVNLKNVLYVKNLQ
FT                 SNFISVAKAVDKGYKVIFHKHSAYIKNGQNEEVLQARKAGNLFVVDTPNNR
FT                 CMYLCANDELWKWHYRYGHLNMASLKRMASNNMVNGLKSIKNVVDIDRITC
FT                 ETCAKGKICVKPFPKMAENRADKVLGLVHSDICGPMNKVSAGGARYFVTFI
FT                 DDYSRYMFVYFLKTRDELLPTLKDFVA"
FT   CDS           2131..4311
FT                 /product="Copia-1_DYa-I_1p"
FT                 /translation="MARSMLIHSGVNEFLWGEAVRTAAYLRNRSETRSLKS
FT                 QTPFELWSGKKPSISHLKIFGCKAIALNKKHAGKFKPKGIECMMIGYSTTA
FT                 KAYRLMRIGSNQVIESRDVVFLEETIGYPKNGNSENETALIDEIGVDCSQI
FT                 LAVDNNKEGAEVLEEEQIDSEVSEADSSDVYASAKSDDSEEREIRGPGRPK
FT                 KIKTGKPGRPRKQYNLLNMMKVQDVKVPITFAEATQSEISQEWVASIQKEI
FT                 GALEANQTWELQDLPEGKKAIGSKWVFGIKGDKDGNVMRFKSRLVAKGCAQ
FT                 QYGIDFFETFSPVVRYSSVRLIISLAVEHNLFLHQMDVSTAYLNSELSEEV
FT                 YMKQPDGFDDKHHGKVLRLKKSLYGLKQSGREWNAKLNKVLQKLHFVPCAS
FT                 EPCVYTRNEKDNINIIAVYVDDLLIASSCKNDLIGIKESIGNEFKVVDSGQ
FT                 LNHFLGIEVEREGETGSISIGHKTYIESMLHTWGMLDCKSAATPLEANFQV
FT                 KCTDPNCKPVNEKDYQSLIGSLMYLAITTRPDIMHSVAKLAQRNVNPHKEH
FT                 EVAAKRILRYLKGTSNLKLHYQSTGKPIHGYVDADWANDTSDRKSYSGYVF
FT                 INAAGPISWESKKQSLVALSSTEAEYVALSIAAREAVFIKKFLKEMGFLID
FT                 HSILIFCDNQSALCLAKNPVLHNRSKHIDIKYHYVRELYSKKEIDVKYICT
FT                 NDMLSDILTKNLQKNKHLKCITEMNCF"
XX
SQ   Sequence 4336 BP; 1455 A; 722 C; 1050 G; 1109 T; 0 other;
     ataggttatg ggcccaggag tagtaaagac tttaataatt gtgtgtgatc aagtggaaaa        60
     taattatttg ctgtaattag cttgtacatt ttttataaac atgagcggac aagggctctg       120
     tgcgatcgac aaattggacg gcgaaaatta cgcagtatgg tcggtgcaaa tgaagagtgt       180
     attggtgcac tcaggtttgt ggtcgttagt gtgcggaaga cgcgtgaagc aagaaagtga       240
     tacagctgag caaggagccc aattcgacga actagacgaa aaagcattag caacaatatt       300
     gctgtgcgtg aaggcttcag aaattaattt gattaaaaac tgtgctagtt ctaaagaagc       360
     ttgggacaag cttgcagctg tgtacaagcc tcgtggaccc gccagaaaaa ttaccttgtt       420
     caggaaatta ctccggttga gtttgtcgga aagtgcgtgc gtgcaaaatt acataaacga       480
     atttgtggat atcgtcgaaa aactgaaaga aattgatatg gacatttctg aagatattct       540
     tactattttg atgctgtcgg gactcggtaa gaaattcgaa aatttcgtgg tagcgatcga       600
     aacgcgtgaa cagttaccga ctctctctaa tttaaaagtg aaaattatag aagggggaga       660
     gagacaaaga gtgagttcgg acgaaacgga actttgtgtg cagcaagcat ttgtgtcgta       720
     tcccagtgga aagggagaca agaaaaatag atcggcgcaa aagaacagtg atgcaaaaaa       780
     gaataaaaaa tgctttcgat gtggtcgcga gggtcacttt attgcgcagt gcaaagtgaa       840
     agacaaaaat gacgaaatag aaacatctgc aaaagagaag tcgtttacta tgcttgcaag       900
     tgtaaataaa aatgacgttc taacgaaaac gatgtggtgc ttggacagtg gagcaactgc       960
     tcacatgtgt tgtgaaaggt cgtggttcgc ggacattaaa gagcataaag agaaaatatt      1020
     acttgcagga gaaaactata tattttcgga tggcgtcggt acggtggccg ttaaaacaaa      1080
     gaatggttcc gttaatttga aaaatgtgct ttacgtaaaa aacttgcaaa gtaatttcat      1140
     atcggtagcg aaagccgttg acaaagggta taaagtgatt tttcacaaac atagtgcgta      1200
     tataaagaac ggtcaaaatg aagaagtgtt acaggcaaga aaagctggaa atctttttgt      1260
     tgttgatact ccgaacaatc ggtgcatgta cttgtgtgca aatgatgagt tgtggaagtg      1320
     gcattatcgt tatggtcatt tgaacatggc gagcctaaaa aggatggcaa gtaacaatat      1380
     ggtcaatggt ttaaagtcga tcaaaaatgt tgtggacata gaccgaatta catgtgaaac      1440
     ctgtgctaaa ggtaaaatct gtgtgaaacc attcccaaaa atggcagaaa atcgtgcgga      1500
     caaagtgcta gggctagtgc attcggacat ttgcgggcca atgaacaaag tatctgccgg      1560
     tggagcaaga tatttcgtaa catttattga tgactactcg cgctatatgt tcgtatattt      1620
     tttgaaaacc cgtgatgaat tgcttcccac gttaaaagac tttgtcgcgt gaccggtgaa      1680
     aaacttaaag caattcgcag cgataacggt cgcgaatata taagccacga gtttcagaag      1740
     ttcctatctg aaaacggtga aaccattccc aaaaatggca gaaaatcgtg cggacaaagt      1800
     gctagagcta gtgcattcgg acatttgcgg gccaatgaac aaagtatctg ccggtggagc      1860
     aagatatttc gtaacattta ttgatgacta ctcgcgctat atgttcgtat attttttgaa      1920
     aacccgtgat gaattgcttc ccacgttaaa agactttgtc gcgtgaccgg tgaaaaactt      1980
     aaagcaattc gcagcgataa cggtcgcgaa tatataagcc acgagtttca gaagttccta      2040
     tctgaaaacg gtattaagcg gcaattgaca gtaccgtaca ctccgcagca aaacggggtt      2100
     gctgagcgcg ctaaccgaac acttgtggaa atggcaagga gcatgcttat acattcagga      2160
     gtgaatgagt tcctgtgggg agaagcagtt aggactgcag catatctacg caacagatcg      2220
     gagacaaggt cgttaaagag tcaaacacca ttcgaactgt ggtcaggtaa aaagccttcg      2280
     atatcgcatt taaaaatctt tggatgcaaa gcgattgcat taaataagaa acatgcaggt      2340
     aagttcaagc caaaaggcat tgaatgcatg atgatagggt attcaacaac agcgaaggcc      2400
     tacagattaa tgcgcattgg atcgaaccag gtaatcgaaa gtagagacgt cgtttttcta      2460
     gaggaaacta tagggtatcc gaagaatgga aacagcgaga acgagacggc acttattgac      2520
     gaaattggag ttgattgttc gcagattttg gcagtggaca acaacaaaga aggtgcagag      2580
     gtgctcgagg aagagcaaat tgacagcgag gttagtgaag ctgatagttc tgatgtttac      2640
     gcgagtgcga agagcgatga tagcgaagaa cgggaaattc gtggtcctgg tcgtcctaag      2700
     aagataaaaa ctggaaaacc cgggcgccca cgaaaacaat acaacttgtt gaacatgatg      2760
     aaggttcaag atgtcaaggt acctattacg tttgctgaag cgacacagtc tgaaataagt      2820
     caagagtggg tagcatcaat tcagaaggag attggcgccc tcgaagctaa tcagacatgg      2880
     gagctacagg acttaccaga aggtaaaaaa gccatcggta gtaagtgggt ttttggcatc      2940
     aaaggagata aggatggcaa tgtgatgcga tttaaatcga ggttggtggc taaaggatgt      3000
     gcacaacaat atggtatcga cttttttgaa acgttttcac cagttgtcag atattcgtcg      3060
     gtaagactta ttatatctct ggctgttgag cataacttat ttctacatca gatggatgta      3120
     tcgacagctt acttaaatag cgaattgagc gaagaagtct atatgaagca acccgatgga      3180
     tttgatgata agcatcatgg aaaagttttg agactaaaga agtcactgta cgggctaaaa      3240
     cagagcggta gagagtggaa cgccaagctc aataaagtct tgcaaaaact gcactttgtt      3300
     ccctgcgcca gcgagccgtg tgtgtacaca cgcaatgaga aggacaatat taatataatt      3360
     gcagtgtatg tcgacgatct tcttattgca agctcatgta aaaatgattt gattggtata      3420
     aaagagtcaa ttggcaatga gtttaaagta gtagatagcg gtcagcttaa tcatttcttg      3480
     ggcatcgaag ttgagcgaga aggtgaaact ggatccatat ccataggtca caagacatat      3540
     atcgagagta tgctacacac ctggggtatg ttagactgca aatcggcagc aacgcctttg      3600
     gaggcaaatt tccaagttaa gtgtactgat cctaactgca agcctgttaa cgaaaaggac      3660
     taccaatcac ttataggatc actaatgtat ttggcaatta caaccaggcc agatataatg      3720
     cattcagttg caaaattggc tcaaagaaat gtgaacccac ataaggagca tgaagtcgct      3780
     gccaagcgta tactaaggta tttgaagggc acctcaaact taaagctaca ttatcaatca      3840
     acaggtaaac cgattcacgg ctacgtcgac gcagattggg caaatgacac atcggatcgt      3900
     aaatcctaca gtggatatgt cttcataaac gcagctggtc caatatcctg ggagtccaag      3960
     aagcaaagtc tggtggcatt atccagcacg gaggccgaat atgttgcatt gtccattgca      4020
     gcaagagaag ccgtatttat aaaaaagttt ctgaaggaaa tgggtttttt gatagatcac      4080
     tcaattttaa ttttttgcga taatcagagt gctttatgtt tagctaagaa tccagtatta      4140
     cataatagaa gtaagcatat cgacataaag taccactatg ttagggaact ttattccaaa      4200
     aaggaaattg atgtaaaata tatatgtaca aatgacatgt tatcagatat attaacaaaa      4260
     aacctacaga aaaacaagca tttaaaatgt ataactgaaa tgaattgttt ctgaatatgt      4320
     tgttgagaag gagtat                                                      4336
//
ID   Copia-1_DYa-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_DYa_;
KW   Copia-1_DYa-I; Copia-1_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-213
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions  925053  924841.
XX
SQ   Sequence 213 BP; 67 A; 44 C; 23 G; 79 T; 0 other;
     tgaaatacta aaaataatat gtatgttaat ttggcaacaa ccatatactg aaatttggta        60
     acactgatat gaatctattc tttttttttt tctgagaact tccttcttct tgtgttaact       120
     tccgaacgac tcacaacgct gtcacgctta tgtcaaataa aacaattatt aaactttaac       180
     taaatcgcct cgcgttttac tcctccattt cca                                    213
//
ID   Copia-1_FoCa-I repbase;    DNA;    INV; 6096 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_FoCa-LTR; Copia-1_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-6096
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2600-2600 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           429..6077
FT                 /product="Copia-1_FoCa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MKKVETSHIPKLNGDNYQPWKLQVTLALQAGGVWGYI
FT                 DGTKKKPTLKTDGSNQTDVDKWDENDVGARSLIVQLLEQGQMAHIYACDSA
FT                 KTTWEKIAEVNSDASILNVQRTLTRFYNFKISEDRSAVEACGELEELARAL
FT                 KEMGNPVTAQALVIKAVSSLPESKFHAFKRAWGSVDAASQTMANLIARIKN
FT                 EELSFKANGEGGEEQQQFNIAFNAQNGNKKFQKGKSNQQQQQQQPQKKKRE
FT                 GACRNCGIEGHWARECRKPKREEGDEAKCNNNNNNNNSNRKQNRKNNKKQN
FT                 EGPGDCQAFLGGHEMEEGSTRWISDSGASFHITGRKDWLTDYKEFKNPIPV
FT                 SITDNSSIRALGKGTVQVEAWVQGEWYPISIHNAHYIPGAVNLFSEGIMDQ
FT                 KGFKIVKENGKTTYYFKGQQGPQAWWLNGNYVMGFRVPKNSAYSATINKTK
FT                 LWHERLAHVNMGYIKNAVKVGAVEGIKMEDLASDFHCSDCHLGKETRQPFP
FT                 EREKNKNLQPGDVIHADLSGKDSTTSLQGSNYFLLLKDEKTGFRQVCFLKK
FT                 KSDAAANIINFLKMFKNQTSKNIKIFKSDNGGEFMCRELQDYFRDQGILHQ
FT                 TSAPRCPETNGLIERDMRTVKEASKTMIIKAGQSPGMWEEAVGFAVYILNR
FT                 LPNRNSPNCTPFEQVFGWPPDLSHVRTFGCTAYAQIPEEDRDPSDPKARIG
FT                 KLVGYGTFGRKFKVYIPEKRKVVPARNVSFLEDGGVRTSYEVEEDDAKHEN
FT                 EQQQQQEEQQEKIHDASSQSTSSHTTKPDEEEVFMDADDEGETTILVETPE
FT                 GNYEYDPDKKKIEIPSRKLRSKDMIKPPKKYQSFVASSPTIPRNYEDAISQ
FT                 PEGEKWMEAMKTEMRSLEGNRTWKYVPRPRHAKVLEPKWVFSIKKNMNGEI
FT                 ERFKARLVVRGYRQQFGVDYQETFSTVARFESIRFILAFTAADGWKYKQFD
FT                 VKTAYLNGVLDEEIFMSQPEGFEIDGDDLVCLLLKSLYGLKQSSRCWNRTF
FT                 SDFLKSIGLFPTHSDPCVFIGVIFGFIVIVVLYVDDGIVTSKSELAIAFVV
FT                 DAMKKAFEITRKDLEVFVGIEITIEGGTMTLAQHQYTEALLEKYDITERRT
FT                 ASVPMKQNLDLVKAENCDTAYPYQELIGSLLFLARVTRPDIAYAVTKLSQF
FT                 NTCYDKTHWDAAQDVLLYLRRTGTLGIQYECNSEFVISAYTDSDFAGDKND
FT                 RKSTTGFATFVNDSLITWCSQKQDVVTLSSTEAEYTALCAGAKEVAWLRKF
FT                 AEEIGREQEEPTTIMVDNTSAIRLVDNPEFHKRTKHVDVKYHYTRQLAEEK
FT                 KVEVVYTPTQDQKADILTKPLGKSKHADMVEKIGLKPVNRKPRGGGGSLFW
FT                 TWAMMMCLLGVTQGVNVQNSQPILWRGSPVPVISGYETVYLRIKLISPCTL
FT                 LTEEIVPKGQLETAKKICNEMYETYFIHEMKQMCPSFHNFSMSKHRPKRFI
FT                 LVALIALGAVVVTGLGIGGVVLAANNAARISDLEEISSLQEKSINQLEEQM
FT                 NFTEIALQKLRTDFNILVKDHEVLDKNLNEITEKGPNTYFTISYITTKLMM
FT                 GKQVIKEATRAWNNKKILNGMMDYFNITLPCGEDECPLSLATGKRCYFGED
FT                 MKDLYIQMDMPKVNKALQLVEADAFDLMLQTWNQTCRITYNGPENAILSKK
FT                 EGCPVALNLKTSRMYDLVLSSSQDCLKGFKNKSENSYFSVKHCQGRGEKDA
FT                 EDFIQVKPHHGSLHVYCFGCNITIDNLSQECPKEVFILPIGARFRINNQEF
FT                 TGSIVHIEHQDSPDPLFTMRTNAYLKPRVDYQELMKDPMVNNHFVFSKGET
FT                 WTHSETWHMEIGLIITLLVVIIVLACILTKCYLDHRKIKVKVVTKPKPLRN
FT                 QEIEEDEDSQ"
XX
SQ   Sequence 6096 BP; 1851 A; 1341 C; 1579 G; 1325 T; 0 other;
     tggtatctta atcgtggttt tcgatcgcac aagaggcaag ttgagatttt cgagttatct        60
     caagttttac gttttgagac agagtgagag gttgggtatg ctctaacaga gggcattagc       120
     caggtaaaag cttttagcta atccttctca cttttcggga aagttgagac tcttctgaga       180
     ctccttctcg ttgtcgtcaa aactggtttg tccagactcg cgtttaagga taaagtcgtc       240
     aagtttcgcg aaaacgtcgc gtttattctt acttcgagta gtgaaataat aatcgtcaaa       300
     ttacacagct ccatacttac acagtttaca cagtacacag tagtttacac agtgtgaagt       360
     tgcagcagtg gtgtgtaact agatacgtaa tcaagattcg agtggtagcg tggaagagag       420
     tcatcatcat gaagaaagtt gagacgtctc atattcccaa gttgaacggg gataactacc       480
     agccttggaa gctacaggtc accttggcgt tgcaggctgg gggcgtttgg gggtacatag       540
     atggtacgaa gaagaagcca accctcaaga ccgatgggag caaccaaaca gacgtggaca       600
     agtgggacga gaacgacgtg ggagctcgct cgctcattgt tcagctactt gagcaaggtc       660
     agatggcgca tatctatgca tgcgactcag caaaaactac ctgggaaaag attgcggaag       720
     taaattccga tgcaagcatt ctgaacgtgc agcggacgct caccaggttc tacaatttta       780
     agatttctga agatcggtct gcggtggaag cctgcggtga actggaggag ctggcgagag       840
     ctcttaaaga gatggggaat ccggtgactg cacaagcatt ggtcatcaag gctgtatcgt       900
     ctcttcccga gtcgaagttt cacgcgttta aaagggcctg gggcagcgtt gacgccgcaa       960
     gtcagaccat ggcaaatctc attgcaagaa tcaaaaatga ggaactgtca tttaaggcca      1020
     acggtgaagg cggggaggag cagcagcagt tcaacatcgc cttcaacgcc caaaatggta      1080
     acaaaaaatt ccaaaaagga aaatccaacc agcagcaaca acagcagcaa ccccagaaga      1140
     agaaacgaga aggggcgtgc cggaactgcg gtatagaggg acattgggcg agggaatgcc      1200
     gtaaacccaa aagggaagag ggtgatgagg ctaagtgcaa caacaacaac aataacaaca      1260
     actccaaccg caagcagaac cgtaaaaaca acaaaaagca gaatgagggt cctggggatt      1320
     gccaagcgtt cctggggggg catgagatgg aagaggggag cacccgatgg attagtgaca      1380
     gcggggcctc gttccatatc actggaagaa aggattggct gacggactac aaagagttca      1440
     agaatcccat tcctgtcagc atcacggaca actcctccat ccgggcactg gggaagggga      1500
     ccgtacaagt ggaagcttgg gtgcaggggg agtggtatcc catatctatc cacaacgccc      1560
     actatattcc tggtgccgtg aacctcttta gcgaggggat catggaccag aaggggttca      1620
     aaatcgtgaa agaaaacggg aagaccactt actatttcaa ggggcaacaa ggacctcaag      1680
     cttggtggct aaatggaaat tatgtaatgg gtttccgcgt cccgaaaaac tctgcatact      1740
     cagccaccat caacaagacg aaattgtggc atgagcgatt ggcccatgtc aatatgggct      1800
     acatcaaaaa tgcagtgaaa gttggggcag ttgaggggat caagatggaa gatcttgcgt      1860
     cggactttca ctgctcggat tgtcatctgg ggaaagagac acgacagcct tttccagaga      1920
     gggagaagaa taagaacctg cagccggggg atgttatcca cgccgatctg tcgggcaagg      1980
     actccaccac gtctctacag gggtcaaatt actttcttct cctcaaggat gagaagaccg      2040
     gtttccggca ggtgtgtttc ttgaaaaaga agagtgatgc tgctgccaac atcatcaact      2100
     ttttgaaaat gttcaaaaac cagaccagca agaacattaa gattttcaaa tccgacaatg      2160
     ggggagaatt tatgtgcaga gaattgcaag attatttccg tgaccaagga atcctgcatc      2220
     aaacatccgc acctcgctgt cccgagacca atgggctaat tgaacgggac atgaggaccg      2280
     tgaaggaagc aagcaaaacg atgatcataa aggcaggaca gtctccgggc atgtgggagg      2340
     aagccgtggg gttcgccgtg tacatactca accgtctccc aaaccggaac tcacccaact      2400
     gcacaccctt tgagcaagtt tttgggtggc ctccagacct gagccatgtc cgtacatttg      2460
     gatgcacagc ttacgcccaa attccggagg aggacagaga cccgtcggat ccgaaggcaa      2520
     gaataggcaa gctagtgggg tatgggacct tcggacgcaa atttaaagtc tacattccgg      2580
     agaaaaggaa agttgttcca gccaggaatg tatccttcct tgaggacgga ggagtccgaa      2640
     ccagttacga ggtagaggag gatgatgcga aacatgaaaa tgagcagcag caacagcagg      2700
     aggagcagca agagaagatt catgatgcat catcccagtc cacttcatct cataccacaa      2760
     aaccagatga ggaagaggtt ttcatggatg cagatgatga gggggagacg acaattctgg      2820
     tcgaaactcc agaggggaac tatgagtacg acccagacaa gaagaagatt gagatcccct      2880
     ccaggaaact gaggtcaaag gacatgatca aacctcctaa aaagtaccaa tcgttcgtgg      2940
     cttcatctcc tacaattcca aggaattatg aagatgctat ttctcagcct gagggagaaa      3000
     aatggatgga agcgatgaaa acggagatgc gcagcctgga ggggaatcgt acttggaaat      3060
     acgtaccgag acctcgtcac gccaaagttc tggaaccaaa gtgggtcttc agtatcaaga      3120
     aaaatatgaa tggcgagatt gaacgattca aggctcgtct cgtcgtgcgc ggataccgac      3180
     agcagtttgg ggttgactac caggaaactt tctcaacggt ggctcgtttt gaatccatcc      3240
     gtttcattct ggctttcaca gcagcagatg ggtggaaata caaacaattc gacgtgaaga      3300
     cagcgtactt aaatggcgtc cttgatgaag agattttcat gtcgcagcca gagggattcg      3360
     aaatagacgg ggatgatctg gtgtgtctac ttctcaagag cctgtatgga ttgaagcaaa      3420
     gctcacgatg ctggaatagg accttctcag atttcctgaa aagcattggg ttgtttccta      3480
     cacacagcga cccttgcgtg ttcatcggtg tcatttttgg attcatagtt atcgtcgttc      3540
     tgtacgtgga cgatggaatt gtgacatcaa agagcgagct agcaattgcg tttgttgtgg      3600
     acgccatgaa aaaggcgttc gagatcacac gaaaagattt ggaggtgttc gtcggaattg      3660
     aaatcaccat tgagggtggg acgatgacac tagcccaaca ccagtacact gaggctctac      3720
     tggaaaagta cgacataacc gagcgcagga ctgcgtccgt cccaatgaag cagaatttgg      3780
     atttggtgaa agctgaaaat tgtgacactg catacccata tcaggaactg atcggctcac      3840
     ttctcttcct ggcccgtgta acccgaccag acatcgcgta tgctgtgacg aagctatcgc      3900
     aatttaacac atgctatgac aagacccact gggatgcagc tcaagatgtc ctcctgtacc      3960
     tgagaaggac cggcactctg gggattcaat acgaatgcaa ttctgagttc gtaatcagtg      4020
     cctacaccga ctctgacttt gccggggaca agaatgacag gaagtccacc actgggtttg      4080
     caacgttcgt gaacgactcg cttatcactt ggtgttccca aaagcaagat gtggtcaccc      4140
     tttcctccac agaggcggaa tacaccgctc tgtgcgccgg agcgaaggaa gtcgcctggt      4200
     tgcgaaaatt tgcagaggaa attggaagag aacaagagga gccaacaaca ataatggtgg      4260
     acaataccag cgcaattcgg cttgtggaca atcccgaatt tcataaaaga acaaagcatg      4320
     tggatgttaa ataccactac acgaggcaat tggcggaaga aaagaaagtt gaagtggtct      4380
     acactcccac acaagaccag aaggcggata ttctcaccaa accattggga aagtccaaac      4440
     atgctgacat ggtggagaag attggcctga aacccgtcaa ccgaaaacca aggggaggtg      4500
     ggggcagtct cttctggacc tgggcaatga tgatgtgtct cttgggagta acacagggag      4560
     tgaatgtcca aaactcccaa cccattctct ggagaggaag ccctgttcct gtaatttctg      4620
     gatatgagac ggtctaccta aggataaaat taatcagccc atgcaccctg ctcactgaag      4680
     aaatcgtacc gaaaggacaa ctggagactg caaagaaaat atgcaacgag atgtacgaga      4740
     cttatttcat ccatgaaatg aagcagatgt gtccttcttt ccataacttc agtatgagca      4800
     agcacagacc gaagagattc atcctggtgg ccctgattgc tcttggcgct gtggtggtga      4860
     ctggacttgg cattggggga gtggtgctgg cagcaaacaa tgcagcaaga atttcagatc      4920
     tggaagaaat ttcaagtctc caagaaaaat ccattaatca attggaggag cagatgaatt      4980
     tcactgaaat tgccttgcaa aaattgcgaa ctgatttcaa cattttggtt aaggaccacg      5040
     aagtcctaga caagaatttg aacgaaataa cagagaaggg ccccaacact tactttacca      5100
     tttcctacat aactacgaag ctgatgatgg ggaaacaggt tattaaagaa gcaacccggg      5160
     cctggaataa taagaaaatc ctaaacggga tgatggacta tttcaacata actcttccat      5220
     gcggagaaga tgagtgtcca ctttcactcg caacaggaaa gagatgctat ttcggggaag      5280
     acatgaaaga cctgtacatt caaatggaca tgccaaaggt caacaaggcg ctgcaattgg      5340
     ttgaagctga cgcatttgac ttgatgctac aaacctggaa ccagacatgc agaatcacct      5400
     acaacggacc agagaatgct attctctcca agaaggaagg atgtccagtc gccctgaatt      5460
     tgaagacatc ccgcatgtac gacctggttc tttcctcctc gcaagactgc ctgaagggat      5520
     tcaagaacaa gagtgaaaat tcctatttct ctgtgaaaca ctgtcaaggg agaggagaga      5580
     aagatgcaga agacttcata caagtcaagc cacatcacgg gtccctacat gtgtactgct      5640
     ttggatgcaa cattacaatt gacaacttat cgcaagagtg tcccaaggag gtcttcatcc      5700
     tgcccattgg agctcgattt cggatcaaca accaggagtt tacgggatcc atcgtgcaca      5760
     tcgaacacca ggacagccca gacccactct tcacgatgag gacaaatgct tatctcaagc      5820
     cgcgcgtgga ctaccaggaa ctgatgaaag acccgatggt caacaaccac tttgtcttca      5880
     gcaagggaga gacgtggacc cattcggaaa cctggcatat ggagattgga ttgatcataa      5940
     ccctgctcgt ggtcatcata gtcctggcgt gcatcctcac caagtgctac ttggaccacc      6000
     ggaagataaa ggtgaaagtg gtaacaaaac caaagccact gaggaatcaa gagattgaag      6060
     aagatgagga ctcccaataa tgcgaatgag ggagag                                6096
//
ID   Copia-1_FoCa-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-323
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2567-2567 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 323 BP; 87 A; 54 C; 59 G; 123 T; 0 other;
     tgttggataa aatgatctaa tattaggtat ttaggttagc tatttcaagt agcctttcat        60
     aacggatgtt tatggcaccg actttattgg acctttgtac agtgtcagct cattcttagc       120
     attcccattc ttgggagaag gatttagcac ttcctttcta tttaggtcag acactttgga       180
     aagtgtcgtg aggaacagtt tcatacattt attaatacat attctattac tcatgatgtc       240
     tatataatca tgttgcatgt tgacaataaa ttatcagtcg attggcaacc gtcgtgttgt       300
     atcgttgttc attatttacc aca                                               323
//
ID   Copia-1_HeAr-I repbase;    DNA;    INV; 4319 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4319
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5619-5619 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           150..1331
FT                 /product="Copia-1_HeAr-I_1p"
FT                 /note="DUF4219, gag, and zinc finger."
FT                 /translation="MATIKIDRLTGDNYDTWKIHMRAILIKNDLWDFVSGS
FT                 SPKPPISDPKYAEWSKLDKKAEADILLAVSPSELAALDGLESSKAIWDKLK
FT                 SMYQSSGPARKASLLKRLVLTRMQEDDDLKKHIADFFDAVKKLKEIGLIVI
FT                 DELLAILLLYSLPDSFAMFRTAMESRDDLPSTETLKVKIIEDYEARKSKTT
FT                 TDEGAMFVKRINKNYRRFNVKNNEQTTHTHSQRNNIVSSVDCHRCGRRGHL
FT                 AKDCRTKTKFIKHRQSAQNIENRGDDRESTTLLTEEALLGRKNNAIWCIDS
FT                 GCTAHMCNERKFIQDFTEVNSELNLANSERTQITGTGKVKLSVDTGSEERK
FT                 INIEKVFYVPDLRTNLMSVAIMTDHGFEVRFRKMTQLSLTKITKFICVQIE
FT                 "
FT   CDS           1274..4261
FT                 /product="Copia-1_HeAr-I_2p"
FT                 /note="integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="KNDAIVVDENNKIHMRADRIGNLYHVRMSDNYVCNIE
FT                 TVNNSMDMWHQRLGHLNERDLKSMVNNGLVHGITFKDGEKLSQCEVCISEK
FT                 QTCTPFPKKRESSTTELLEIVHSDVCGPMNHKSYSGKRYFVTFIDDKSRWC
FT                 EVYFIANKSDVFSVFKIYKAYAENLTGKKIKNLQSDNGKEYVNNEFNDYLQ
FT                 NAGIRRRLTAPYTPQQNGVAERKNRTLVEMARCMMRQAGSPPTFWAEAINT
FT                 ANYIRNRCPTTALNGEIPFTLWKGKKPTVIYMHVFGSKVYYKEKGKPKGKF
FT                 DSRSKLGIFVGYDIQSKAYRIHDPTTKKIIITRDVKFMNETAFRHEYKEIL
FT                 DEEEGIDEEEVQIELNTNNKRKETFENRKNDATPGSSYDKSDESEEDDDKS
FT                 PPRSVKSTISWEHLIEPKRGRGRPRMIRTGQAGRPRKEYHTVEETDKESDE
FT                 WLSAGIATVEQVTWKDIQKGSDVHLWRSAMENEYLSQIKNKTWEIVKRPKQ
FT                 RKVIGSRFVFTTKSTGKKVRLVAKGCSQRPGEDFHEISSPVVRSSSIRIIA
FT                 ALAAEMGLKIHQMDVVTAYLNGYLDEEIYMEIPEELSNTLKRIIAKEEIGS
FT                 QKNIVTDTDILQTAKRWYEMIHECEDSVCLLKKSLYGLRQSGLQWYKRLSG
FT                 FFIDIGFESLPQEPCVFVARKGERIMIIGIYVDDMILATNDNAWMEHVKKQ
FT                 LGSEFEMKDMGKISSCLGIEFSRDDESRVYLNQKSYIDKVLERFGMSECKA
FT                 AITPIDVNVRLEKPECINNDVMRDYPYQNLIGALMHLAVSTRPDVAYAVNY
FT                 LSQFNTNYDIAHWKAAKRVLRYLKGTSNYGLVYERTGLPLFGVVDADWAGN
FT                 TVDRRSYSGFAFILAGAPVSWEARKQRTIALSSTEAEYLAISECTKEAMYL
FT                 REILNRIGVQCECVTLFNDNQGAIKLAQSKNFHPRTKHIDVRHHFIRDKCE
FT                 QGVIELKYMSTDKMPADVLTKGLNGSKHLECVRNLGMFADE"
XX
SQ   Sequence 4319 BP; 1535 A; 646 C; 997 G; 1141 T; 0 other;
     ggttatgggc ccagatagag tcacgtagtc agtgagtgaa aaactcgtaa tataaatgca        60
     caatgcagtt atttgaaaaa caataaaatt gtcaaacgga aaaattttga agtttgttcg       120
     aggcttcgag aagttgaaaa aacttcgcca tggctactat caaaattgat cgtctcactg       180
     gcgataatta cgatacctgg aaaatccaca tgcgtgccat actaatcaag aatgatttat       240
     gggattttgt ttcgggatcg tcgcccaaac cgccgataag tgatcccaaa tatgcagaat       300
     ggtcgaaatt ggataaaaag gcagaagccg acatattgtt agcggtaagt ccaagcgaat       360
     tggccgcatt ggatggtcta gaaagttcca aagctatatg ggataaactc aagtcgatgt       420
     accaatcgag tggtccggct agaaaagcat cgctgttgaa gagactggta ttgacccgta       480
     tgcaggaaga cgatgatttg aagaaacaca tcgcagattt ttttgatgca gtcaagaaat       540
     tgaaagaaat cggattgata gtgatagatg aattactagc tatattattg ctgtatagtc       600
     tacccgattc attcgccatg ttcagaacag caatggaatc acgagatgat ttaccgtcta       660
     cagaaaccct aaaggttaaa attattgaag actatgaggc tcgtaaatca aagactacga       720
     ctgatgaggg agctatgttc gtaaaacgca tcaacaaaaa ttatagacgt ttcaatgtga       780
     agaacaatga acaaacaacc cacactcata gtcagagaaa taatattgta tcaagtgtag       840
     attgtcatcg ttgcgggcgt cgtggacacc tcgcaaaaga ctgcagaacc aaaaccaagt       900
     ttataaaaca tagacagagt gcacagaata tagaaaatag aggagacgac agagaatcaa       960
     caacattatt gaccgaagag gctttattgg gaagaaaaaa taatgctatt tggtgcattg      1020
     acagtggatg cacggctcat atgtgtaatg agagaaaatt tatacaagat tttacagaag      1080
     tcaattcaga gctaaactta gcaaatagcg aaagaactca aatcacaggt accggaaagg      1140
     ttaagctctc cgtggatact ggcagtgaag aacgaaaaat aaatattgaa aaagtatttt      1200
     atgttcctga tttaagaacg aacttaatgt cagttgccat catgacagat catggttttg      1260
     aagttcggtt tagaaaaatg acgcaattgt cgttgacgaa aataacaaaa ttcatatgcg      1320
     tgcagataga ataggaaatc tgtatcatgt tcggatgagt gataattatg tgtgtaatat      1380
     tgaaaccgtg aataattcaa tggacatgtg gcatcaaagg ctcgggcacc taaatgaacg      1440
     agacctaaaa agtatggtaa acaatgggtt agtacatgga ataacattta aggatggcga      1500
     aaagttatct caatgtgagg tttgtattag cgagaagcaa acttgcacac cttttcctaa      1560
     gaaaagagaa agcagcacca cagaactact agaaatagtt catagtgatg tttgtggccc      1620
     tatgaatcat aaatcataca gcggtaaaag atattttgtc acatttattg acgataagtc      1680
     gagatggtgc gaagtttatt tcattgcgaa taagagtgat gtatttagcg tgtttaaaat      1740
     ttataaagcc tatgctgaga acttaacagg gaagaaaata aaaaaccttc agtccgacaa      1800
     tggtaaggag tatgtgaata atgaatttaa tgactattta cagaatgctg gcataaggag      1860
     aaggttgacg gcaccatata cacctcaaca gaatggtgta gccgaaagaa agaataggac      1920
     attggttgaa atggcacggt gcatgatgcg acaagctgga agccctccca cattttgggc      1980
     tgaagctata aataccgcca attacataag aaatagatgc ccaaccacag ccttaaatgg      2040
     tgaaataccg tttacactat ggaaaggcaa gaaacctacg gtaatataca tgcacgtgtt      2100
     cggttcgaag gtatattata aagaaaaggg aaaacctaaa ggaaagtttg actcacgttc      2160
     gaagctagga atatttgtgg gctatgacat acagtccaaa gcatatagga tacatgatcc      2220
     tacgaccaag aaaattatta taactagaga tgtgaaattc atgaatgaga cagcattcag      2280
     acatgaatac aaagaaatcc ttgacgaaga agaaggtatt gatgaagaag aagtgcaaat      2340
     agaattgaat acgaacaata aaaggaagga aacatttgaa aataggaaaa atgatgctac      2400
     tccaggaagt tcatatgata aaagtgatga atctgaagaa gatgacgata aaagtccacc      2460
     acgttcggta aagtctacta tatcatggga acacttaata gaacctaaaa gaggaagagg      2520
     aagacctcgc atgatacgta ctggtcaagc gggtagacca cggaaagaat accatacagt      2580
     agaggagacg gataaggaat cagatgaatg gttgagtgct ggaatagcaa cagtagaaca      2640
     agtaacgtgg aaagatatac aaaaaggaag tgatgtgcat ttgtggagat ctgccatgga      2700
     aaacgaatat ttgtcccaaa tcaaaaataa aacctgggaa attgtaaaaa gaccgaaaca      2760
     acgcaaggta atcggtagca gatttgtttt taccaccaag agtactggaa agaaggtgcg      2820
     cctcgtcgca aaaggatgct cacaacggcc aggggaggat ttccacgaga tttcttcgcc      2880
     cgttgtgaga tcctcatcaa taagaattat agctgctttg gcagctgaaa tgggtttgaa      2940
     aatccatcaa atggatgtag tcacagcata cctaaacggt tacctagatg aggagatata      3000
     tatggagatt ccagaagagt taagcaacac tctaaagaga attattgcca aagaagagat      3060
     tggttcacag aagaatatag taacagacac agatatacta cagacggcta aacgttggta      3120
     tgaaatgatt catgaatgtg aggatagtgt gtgtttgcta aagaaatctt tgtatggctt      3180
     gcgacagtct ggtttacaat ggtataaaag gttatcggga ttttttattg atattggttt      3240
     tgaatctttg ccacaagaac cttgtgtatt tgttgcacgt aagggtgaac gaataatgat      3300
     aattggtata tatgtcgatg atatgatttt agcaactaac gataatgcat ggatggaaca      3360
     tgtaaagaag cagttaggaa gtgaatttga gatgaaagat atgggtaaga tatctagttg      3420
     tttaggtatt gagtttagcc gtgatgatga aagtagagtg tatttaaatc aaaaatctta      3480
     tattgataaa gtgttagaac gctttggtat gagtgagtgt aaagctgcaa ttacgcctat      3540
     agatgtgaat gtgagattgg agaagcctga gtgtattaat aatgatgtta tgagagatta      3600
     tccttatcag aatttgatag gagctttaat gcatttagca gtgtcaacga ggccagacgt      3660
     tgcatacgct gttaattatt taagtcaatt taatacaaac tatgatattg cgcattggaa      3720
     ggctgctaag cgtgtattga gatatttgaa aggtacgtca aattatggac ttgtttatga      3780
     aagaacaggc ttgcctctgt ttggtgtagt agatgcagac tgggcaggaa acacagttga      3840
     tcgtaggtct tattcaggtt ttgcctttat tcttgcaggc gctccagtta gctgggaagc      3900
     gaggaagcaa cgaactattg ctttgtctag taccgaagca gaatatttgg ctatatcaga      3960
     atgcacgaaa gaagcgatgt atttgcgtga gatactaaat agaattggcg tgcagtgtga      4020
     gtgtgtgaca ctttttaacg ataatcaggg tgccatcaaa cttgctcaga gcaagaactt      4080
     tcatcctcgc actaagcaca ttgatgtgcg gcatcatttc attcgggata aatgtgaaca      4140
     aggtgtgatt gaactaaaat atatgagtac tgataaaatg cctgctgatg tgttgaccaa      4200
     aggtttgaat ggatcaaagc atcttgaatg tgtacgtaat ttaggtatgt ttgctgatga      4260
     atgaatttaa ttataaaatt gtatattata ttagcactgc tcacgacttc gaggggagg       4319
//
ID   Copia-1_HeAr-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-176
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5536-5536 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 176 BP; 44 A; 32 C; 40 G; 60 T; 0 other;
     tgttacgaaa tgcgaaggac gcgagcagcg ccatcttttg gttggattat gtaaacgttc        60
     tctgtgaggt tatctagcat gacggacgtt ttgtcattgt gtaaattgtg ttgtgtgctc       120
     tctcaagaat aaaataagat aatcccaata gctgttttct ttggccatac ccttca           176
//
ID   Copia-1_HMM-I repbase;    DNA;    INV; 3685 BP.
XX
AC   CAEZ01009769;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_HMM_;
KW   Copia-1_HMM-LTR; Copia-1_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3685
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009769; Positions   28656   32340.
XX
CC   Positions [1494-2027] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..2894
FT                 /product="Copia-1_HMM-I_1p"
FT                 /translation="MVSQISMGTIEKLIGRENYQSWKFAVKNYLEHEELWQ
FT                 EIEPDAGYQSDSKKNTKARSKIILLIDPVNYVHVQEATTAKQVWIKLEKVF
FT                 DDSGLSRKVGLLRDLITTNLENCSSVEEYVNKVMSTAHKLRNINFVVGDEW
FT                 LGTLLLAGLPDYYKPMIMALESSGVAITADYVKTKLLQEVKVSDSVAYYSK
FT                 AKAYNKQNVSKFSQNNSHNQTQEKRQPKGPRCYVCNKYGHMSKDCYFKDKK
FT                 KGSSNTDNSKINGYYAAFPVSAKLDGNCWYVDSGASLHMCNNENWMYDVTP
FT                 CTINNIKVADNKIVPVKGSGNVDFQIRDSDGTLQTIQVRNVLFVPTLSVNL
FT                 LSVSQMINNGCEVKFERDGCQIYKNNKLVLTALHRNNMYIVNNVSEAPALL
FT                 STVNEQDINLWHQRMGHLNFTDLQKITESAEGVELLKKGNQVCTTCLEGKM
FT                 SRQPFKNTGTRASELLQLIHSDVCGPMETSSVGGARYYVTFIDDYSRKVFV
FT                 YFMKNKSETLEKFKEFKNLVENEINKKIKTLRSDNGREYINNEFKLFLCKT
FT                 GIQHQTTNPYTPEQNGMAERMYRTLVERAKCLILNSRLQKYFWAEAVSTAA
FT                 YIVNRSPTKALEYKTPYEMWTGKKPNLNNMKIFGCHAMVHVPKEKRQKWDS
FT                 KAVKMIFVGYCEHTKGYGLYDMSKKQIYKSRDVVFLEHTVKNNCVIMPLTT
FT                 LQQQEATELESDTDTFVNESSEEDKLFDATSELSNSESDNNDPDYTPESFE
FT                 EEETMPFRNMTLRPRNKPTTFFCHDEKPTDSAILLKEPETVEEALSGSKAK
FT                 EWKDAMDSEYESLLQNNTWTLVTLPENKRIIPCKWVFKIKTDANGKVVRYK
FT                 ARLVIKGFIQKKGTEYRVFCSGSTTYFNKIFVCNGCKRKLIYRSNGCSYSI
FT                 LTGRHRH"
XX
SQ   Sequence 3685 BP; 1354 A; 579 C; 738 G; 1014 T; 0 other;
     ttaggttatg ggcaaataat gtccgaaagt aaatacgaaa tataattcga tacaaaactg        60
     ctgtgattaa attggattca atttcataac ctcgcaatcg gccattaccg gcgtgtttgt       120
     ttccttcttc aacatattct ttgacgaaaa gtacattaaa aatggtgtca caaatatcaa       180
     tgggcacaat tgagaaactc attggaagag aaaactacca aagttggaaa tttgccgtca       240
     agaactatct ggaacatgaa gaattgtggc aggaaattga acctgatgcg ggttatcaat       300
     ccgacagcaa gaaaaatacg aaagcaagat cgaaaataat acttttgata gatccagtta       360
     attatgttca cgttcaagaa gctacaacag cgaaacaagt atggataaaa ctcgaaaaag       420
     tatttgatga ctctgggctc agtcgaaaag taggtttact aagagatctg atcaccacca       480
     acttggaaaa ttgctcgagt gttgaggaat atgtcaacaa ggtaatgtca acagctcata       540
     agttacggaa tatcaacttt gtggtaggag atgagtggct tggtacattg ctgcttgctg       600
     gcctccctga ttactacaaa ccgatgataa tggctttaga gagctctggt gtggctatta       660
     ctgccgatta tgtcaaaacc aagttgctac aagaggttaa ggtatcagat tctgttgctt       720
     actattcaaa ggccaaggct tacaataaac aaaatgtgtc aaagttttca cagaataatt       780
     cacataacca aacacaagaa aaaaggcaac ccaaaggccc acggtgctat gtatgtaata       840
     agtatgggca tatgagtaaa gattgctatt ttaaagacaa aaaaaagggt tcgtcaaaca       900
     cagataattc aaaaattaat ggttattatg ctgcttttcc agtttctgct aaattggatg       960
     gaaactgctg gtatgtggat tctggagcat ctctgcatat gtgcaataat gagaattgga      1020
     tgtatgatgt tactccatgt acaatcaata acatcaaggt ggcagataat aaaatagtgc      1080
     cagtaaaagg cagtggcaat gtggatttcc agataagaga ctcagatggc acattacaga      1140
     caatacaggt tagaaatgtt ctatttgtac ccacactatc tgttaattta ctttctgtaa      1200
     gtcaaatgat aaataatggc tgtgaagtga aattcgagag agatggttgt caaatttata      1260
     agaataataa attagtattg acagctctgc atcgcaataa catgtatata gtaaataatg      1320
     tttctgaagc accggcattg ctatcaacag tgaatgagca agatataaat ttatggcatc      1380
     aaaggatggg ccatctaaat ttcactgact tacagaaaat aacagaaagt gcagaagggg      1440
     ttgaattatt aaaaaaaggt aatcaagttt gtacaacttg tttagaaggt aaaatgagta      1500
     gacaaccgtt caaaaatact ggcactagag cttctgaatt gctccaatta attcactctg      1560
     atgtttgtgg tccgatggag acaagttctg ttggaggtgc cagatattat gttactttca      1620
     tagatgatta tagcaggaag gtatttgtct atttcatgaa aaataagtct gagactttag      1680
     agaaattcaa agaattcaag aatttagtag aaaatgaaat aaataaaaaa ataaagacat      1740
     tgcgctccga taacggaaga gaatatataa ataacgaatt taaattgttt ctgtgtaaaa      1800
     ctggtattca gcatcaaaca actaacccat atacgcctga gcaaaacggc atggcagaga      1860
     gaatgtatcg cacattagta gagagagcta aatgtttaat tttgaattcc agattacaaa      1920
     aatatttttg ggctgaagcg gtttcaacag cggcttatat tgtaaatcgt tcaccaacaa      1980
     aagctttgga atacaagaca ccatatgaaa tgtggactgg taaaaaacca aatttgaata      2040
     acatgaaaat ttttggttgt catgcaatgg ttcatgtgcc aaaagaaaag agacaaaaat      2100
     gggattcaaa agctgtcaaa atgatatttg tgggttattg tgaacataca aaaggttacg      2160
     gattgtatga tatgagtaaa aaacaaatat acaagagcag agatgttgtt ttcctggaac      2220
     acacagtcaa aaacaattgt gttataatgc cgcttactac attgcaacaa caggaagcta      2280
     ctgaactaga atctgatacc gatacttttg taaatgaaag ttctgaagaa gacaaattgt      2340
     ttgacgccac cagtgaattg tcaaactcag agtcagataa taatgaccca gattacacac      2400
     cagagagttt cgaagaggaa gaaacaatgc cctttagaaa tatgactttg aggccaagga      2460
     ataaacctac tacatttttt tgtcatgatg agaagccaac tgattcagca atattattaa      2520
     aggaaccaga aactgtggaa gaagctcttt caggttcaaa agcaaaagag tggaaagatg      2580
     ccatggatag tgaatatgaa tcactccttc agaataatac atggacatta gttacgcttc      2640
     ctgaaaacaa gaggataatt ccttgcaaat gggtttttaa aataaaaacc gatgcaaacg      2700
     gtaaagttgt acgatataaa gctagattag tcataaaagg tttcatacaa aagaaaggaa      2760
     ctgaatatag agttttttgc tccggtagta cgacatactt caataagata tttgtttgca      2820
     atggctgtaa aagaaaactt atatatagat caaatggatg cagttacagc attcttacag      2880
     ggagacatag acactgaaat atatatgaat caaccaccga gttatgaata tgggcacgaa      2940
     gtttgtagat taaataagtc catttatggc ttaaaacagg ccagtcgcca atggaattta      3000
     aaactaacag ccttatcaag aagcaattgg gagtttactt tacctatcac agggtacaag      3060
     accagatata tgttttatag taaacaaatt gagaagcttc aataacaaac cagaaatgca      3120
     acactggcta gcagtaaaaa gagtactgcg gtatataaag ggcacaaagg attgtaaatt      3180
     gatatttagt caaaacaaag aagaggaaag agtgtttggc tacagtgatt ccgattgggc      3240
     ttcagttact aacagccggc gatcatgcac tggctacaca tttctgtttc agggtgcttc      3300
     agtttcatgg agttctaaac gtcagaacac agtcgcatta tcaaccatgg aggcagagta      3360
     catggcatta gctactgcca cacaagaggc tttgtggtta cgacatttgg agtcagaatt      3420
     gcagtataat atttcagttg cacctaccat aatttactgt gataatcaaa gtgcaattaa      3480
     atttacaggc aatgattcct actatgcacg aagcaaacat attgatatac gatatcattt      3540
     tcttcgcgaa agagtcgcta atcaggaaat tgatctcaaa tatattggca ctcaggaaat      3600
     ggttgccgac atacttacaa aaccaatttc tcaaaagaag actgaagttt tttctacagc      3660
     tatgggtttg caattaagaa gagga                                            3685
//
ID   Copia-1_HMM-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   CAEZ01009769;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_HMM_;
KW   Copia-1_HMM-I; Copia-1_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-185
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009769; Positions   28471   28655.
XX
SQ   Sequence 185 BP; 61 A; 25 C; 21 G; 78 T; 0 other;
     tgttgaaatt aactaattgc aacactgaat aacgccatct atctttataa atgtcaaaaa        60
     caatgacttg tttgtcgata atttctttca tatactgtaa tttgtattgc tgtctgttta       120
     ctaagtaaat taaataatat tgtgttctgg agttatattt tcttataaat tactttaaca       180
     ttcca                                                                   185
//
ID   Copia-1_LH-I repbase;    DNA;    INV; 4068 BP.
XX
AC   ADOQ01001766;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_LH_;
KW   Copia-1_LH-LTR; Copia-1_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4068
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001766; Positions   19581   15514.
XX
CC   Positions [1555-2058] - Integrase core
CC   'ATCTG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           955..3744
FT                 /product="Copia-1_LH-I_1p"
FT                 /translation="MVSTQLSDTSDATKWIIDSGCTEHVCWQIEYFVNYEK
FT                 LKEVVTFELGDVRKVSAEGSGQIRIRSKVDGKEHHLQNVMFVPEMKANLFS
FT                 VRSAAERGFKQIIVGDKWLFKRNGLLVVEGHRKNNMYILNIDVIQNKEFNF
FT                 VARSQKENSLQVWHERMGHQSKTHVKKLLTLKGIQISAVDKTEYCNGCAFG
FT                 KCQRTNFKEILKATKIGELVVTDVCGPMEEPSWRGYRYFVTFKDDFTQYRK
FT                 VYFIRHKNEVATCFEHYVKYAYTQTGNVIKTIMSDNGTEYTDQTFVEIAKK
FT                 NGIEIGRSAIYTPQQNGRAERENRTLIEMSRTMLLTHGMSRRFWAEALNCA
FT                 AYTLNRTGKSREKGKTPYEVWFKKEYSLNHLRIFRSECFVRVPKEKRDDKK
FT                 FGKTSKRGIFVGYEDITGNYRVWIPEETRIEISRDVEFREVIVPETLIDLS
FT                 QREKEEENLLQEKECQQERPQRGSQEQGDQMEIDKNQEEPRKPTYQLRNRT
FT                 TLQAPKRFVYLCNKSPVEPGSYNEAVKVPERENWIKAMDEEMDSHWKNGTW
FT                 ELVEPKQNMNPLSSKWVYCIKTKSNGEIDRYKARLVIKGCEQTYGVDYSET
FT                 FSPVVRYDTVRLLLWLAATDNLEINQFDCKTAFLNGTLEEMIFMVQPEGYN
FT                 DGSGRIYKLIRSLYGLKQGPRCWNQRLSQYLNTIGFMSSPLDTCVFIKRDI
FT                 GRIIVIAVYVDDGLIFANRKEDITELLSQLQQEFEITISNEVSQFLGFQIE
FT                 RLDNGNIKIHQAAYILKTLKIFNMEDCRASKIPVDKASLDILYDEKEANVE
FT                 HPVASAVGRLMYLVVTTRPDLAYAVGKAAQQMSKPTTGLWKFIKRILRYLK
FT                 GTIELGIIYGKSSDNYLDVFADADYAGDLLTRRSTTGYVSLLGNGAITWSS
FT                 QRQSCIALSTTEAKYIAASTAAKELV"
XX
SQ   Sequence 4068 BP; 1473 A; 628 C; 880 G; 1087 T; 0 other;
     ggttatgggc ccagacacgt attgtcagaa gtcgattgaa aagtagagaa ataaagatta        60
     agttgccacg tggacgctaa actgtaacga gcttgttaaa tataattttc tggactttgc       120
     ttgccgattg tcgaagcaca atggacggag acagagtgaa aattgagaag cttgtggatt       180
     ccagtaactg gatgcaatag aaattccaga taagggctat tcttgatgct cgtgatgcgt       240
     tggaattaat tgatgacagt ttgatcaaac ccgaaggcaa tgatccggcg aatgcagcag       300
     aactaaatcg atggaaaaag gctaacaaag tagcaaaaga aattttggta acaacgttgg       360
     acaaaaaacc attgtcattg gttatgacct gtgagacggc acgagaaatg tgggtaaagt       420
     tattgaatat ttacgaacaa aaatcagcgg actcggttta tttgcttcaa acgcagtttc       480
     gtgagtatcg ttataattct ggcgatgata ttgcaactca cgtaagtaaa ttggaatcat       540
     tcgctcgccg attacaagaa ctaaataaac caatttcaga tacaatgtta ataacaactg       600
     ttttgaatac attaccccct gcttttcgac attttcatag cgcttgggat tcgactcctg       660
     ctacagagca aaccttggat aagcttgtat ctagacttat ggttgaagaa acaagattag       720
     gaatcaatga tataagtttg aatgctgaat cagctctgat gacaaagaaa caatcaaagg       780
     gaaaacatgc aaaaggaaat actgctcaac gaatgtacaa aaaggatcag gatgacaatt       840
     ctaaagcaac attgagatgc tggacgtgtg gagaaccaac acttacgacg caattgtcca       900
     tcaaaaaaga aaaacggtga taataaacaa aaggaaaata ctcatggatt agctatggta       960
     agtacacaac tatcggatac atccgacgca acaaaatgga ttatcgattc aggatgtaca      1020
     gagcatgttt gctggcaaat cgaatatttt gtaaattatg aaaagctgaa agaagttgtt      1080
     acattcgagt taggcgatgt tcgcaaggtt tcagcagaag gttctggaca aatcagaata      1140
     cgatcaaaag tagatggaaa agaacatcat ctgcaaaatg ttatgtttgt tccggaaatg      1200
     aaagctaatt tgttctctgt tcgatcggcc gcggaaagag gatttaagca gattattgtt      1260
     ggtgacaaat ggttatttaa gaggaatggc ttacttgtag ttgaaggtca caggaagaac      1320
     aatatgtata ttctgaatat tgatgtaatt cagaataagg aatttaattt tgtagcacga      1380
     agtcagaaag aaaattcttt acaagtttgg cacgaacgaa tgggtcacca gagtaagact      1440
     cacgtaaaga aactattgac attaaagggt attcaaatct cagcagtaga taaaacagaa      1500
     tattgcaatg gatgtgcttt tgggaaatgt caacgtacga attttaaaga aatattaaaa      1560
     gcaactaaaa tcggagagtt ggttgtaact gatgtctgtg gacccatgga agaaccatca      1620
     tggagaggat atagatactt cgtaacattt aaagatgatt tcacacaata ccgaaaagtt      1680
     tattttattc gtcataaaaa tgaagttgca acatgttttg aacattatgt taaatatgct      1740
     tacactcaaa ctggaaacgt aataaagacg attatgtcgg ataatggtac agaatatact      1800
     gatcaaactt ttgttgaaat cgcaaagaaa aatggtatag agataggaag atctgcaatt      1860
     tatacacctc aacaaaatgg gagagcagag agagaaaatc ggactctgat tgagatgtca      1920
     cgaacaatgc tattaacaca tggaatgtct agacgctttt gggcagaagc gttaaactgt      1980
     gctgcatata ctctaaatcg aaccggaaag tcacgagaaa aagggaaaac tccatatgaa      2040
     gtctggttta aaaaggaata ttctttaaac cacttgagaa tttttagaag tgagtgtttt      2100
     gttcgagtac cgaaagagaa aagagatgac aagaaatttg gaaaaacaag caagcgagga      2160
     attttcgtag gatatgagga cattactgga aactatcgtg tttggatacc ggaggagaca      2220
     cggattgaaa ttagtcgaga tgttgaattt cgtgaagtta ttgttccgga aacattgata      2280
     gatttgagcc agagagagaa agaagaggaa aatctgttgc aagaaaaaga atgtcaacaa      2340
     gaacgcccgc aaagaggaag tcaagaacaa ggcgatcaaa tggaaataga taaaaatcaa      2400
     gaagagccac ggaaaccaac atatcaatta aggaaccgaa caacacttca agcaccaaaa      2460
     agattcgttt atttatgtaa taaatctcct gttgaaccgg gatcttataa tgaagcagta      2520
     aaagtaccgg aaagagagaa ttggattaaa gcaatggacg aagaaatgga ttctcattgg      2580
     aagaatggca cctgggagtt agtagaacct aaacaaaata tgaatcctct atcatcgaag      2640
     tgggtttact gtattaaaac caaatctaat ggagaaattg atcgatataa ggcacgattg      2700
     gttattaagg gatgtgaaca aacttatggt gttgattatt ccgaaacatt cagccctgtt      2760
     gttcgatatg atacagtacg attactactt tggcttgccg caacagataa tctagaaata      2820
     aatcaatttg attgtaaaac agcctttttg aatggaacgt tagaagaaat gatctttatg      2880
     gtacaaccag aaggctataa tgatggatca ggacgtattt ataaactaat ccgaagcttg      2940
     tatggactta aacaaggacc tagatgttgg aatcaaagat tgagtcagta cctaaataca      3000
     attggcttta tgagtagtcc tttggacaca tgtgtcttta ttaaacggga tattggaaga      3060
     ataatagtca ttgctgtcta cgtagatgac ggattaattt ttgcaaacag aaaagaagat      3120
     attactgagt tattgagtca attgcaacag gaatttgaaa ttacaattag caacgaagtc      3180
     agtcaatttc ttggtttcca gatagaacgg ttggataatg gaaatataaa aattcatcaa      3240
     gcggcctata tactgaaaac gttaaagatt ttcaatatgg aagactgtcg agcctcgaag      3300
     atacctgtag acaaggcatc gctggatata ttgtatgacg aaaaggaagc taacgtcgaa      3360
     catcccgttg cctccgcagt tgggcgtctt atgtatcttg tggttactac cagacccgac      3420
     ttggcttacg cagtcggaaa agcagctcaa caaatgtcga aaccaaccac tggattatgg      3480
     aaatttatta aacgtatcct tagatacttg aaaggaacga ttgagttagg tattatttac      3540
     ggtaaatcgt ctgataatta tttagatgtt tttgctgatg cagattatgc tggcgattta      3600
     ttaacgagac gctctaccac tggttacgtt tcactcttgg gaaatggagc tattacatgg      3660
     agcagtcaac gtcaaagctg tatagcttta tcgacaacgg aagccaagta tatagcggca      3720
     tccaccgctg ccaaagagtt agtgtgactg cataacatac ttaaagaatt caaacctgga      3780
     attcaagcac gtctttttgt ggacaatcag gctgcgattc ggctagcaaa taaccctgaa      3840
     caacacaaac gaacgaaaca cattgcagtg aggtatcact atattcgaga attggtcacg      3900
     gaaagaagat tgtaataaat atatcgacac aatcagtcaa gtggctgata tgtttacaaa      3960
     gcccttgaga ccattacgct taaaggaact tagtcataaa attgaactta attaaccaga      4020
     aactatgtaa ttaaaatttt atttatgagg gatacaattt agggagag                   4068
//
ID   Copia-1_LH-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   ADOQ01001766;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_LH_;
KW   Copia-1_LH-I; Copia-1_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-281
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001766; Positions   15513   15233.
XX
SQ   Sequence 281 BP; 64 A; 50 C; 48 G; 119 T; 0 other;
     tgttgtaaga ttaaagtgta tccttcagtt tcgtttttat gtaactatct gtaagtcgca        60
     tgttactttt tccttttttt tttcttttgc tgattgctta ttggttgcgc ttttgcaaat       120
     gcgcatgctt acgaggactt acgtttttgg ccctgttctg ttttttcacg tttatatcaa       180
     cgctgttttg tataaccaaa cgaaggctta taataaacct actaagtatt tcaattgact       240
     tgggatggtg tatttctttc tggaaaccat ccacaacaac a                           281
//
ID   Copia-1_LMi-I repbase;    DNA;    INV; 4208 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4208
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3073-3073 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4182
FT                 /product="Copia-1_LMi-I_1p"
FT                 /translation="MMENEISRITKLKGIENWSAWKFQVRVTLSAMGAWDI
FT                 VTGEVIKPECNDNMNTEARLKYEKDLVRWNKLDNAAQKVIGTSIEDKPLLH
FT                 IINCESSAAMWIKLLSVYEQKNSVSIHLLQQQWYNLKKDISNDMATYISQL
FT                 EDLVHRLRNQGENISDSMVITKLLMTLPKSYNHFLSAWESTHPDQQTLANL
FT                 TSRLLMEEKRLNLQEDMKGEAFAAGTQGRSNHFKNNPCPANKNSRKQGKCF
FT                 KCNKPGHWAKDCKTICFKCNKPGHCAKECRSTVSKHQGQNQCELRGDALIS
FT                 KILAANHVNKNAWFLDSGATDHMCNEIEWFVNYSPFESEVQICIGDGSYIT
FT                 SHGKGDINILAFDGKRWNEKYLSNVLYVPDIRFNLFSLGAALDKGIQFKSD
FT                 KATCRLFKGENVVAVGVREERLYRMKFKISLSENDSVQANVATKEDLKIWH
FT                 KRLAHQNFPHVKKFLKDRQIQFKEEDKSLCEDCVVGKIHKLPFHKSDSKSK
FT                 RAGELIHCDLCGPMQVDSIGGSRYFLLLKDDYSHWRTVYFLRHKSEVAEHL
FT                 ESFIKTTEKQIENGIKVIRTDNGLEFINHEVRKIMQNYGITHQKSVTYCPQ
FT                 QNGAAERENRTLVETARTMIHASGLPIRLWAEAINTATYILNRTGTSSVNG
FT                 KSPHKMWNGLDYDVTKLRIFGEMVYTHIPKERRQKWDSKGEKGFLVGYDTE
FT                 VKGYRVWFSHKDQVKIYRDIVFMGKLYKDCQSEKTFNTECVPFLISETTDD
FT                 KQTTQEESLNQTGEEIRIFEEESNTEANCRSSMQNDNQEVIKSENKIRSSL
FT                 RDRSKIKKPVRYANYTTVNSTCITKCYEPISYQDAMECDNAENWKQAMREE
FT                 MYSLNLNETWILTEPPENQEILDNRWVFKVKRRTDGTVDRFKARLVARGFR
FT                 QKLGMNYTETFSPVVRFDSIRIILSIAASKAMHMRQFDVKTAFLYSEIDTE
FT                 IYMKQPEGFEDGTKKVCKLKKSIYGLKQASRLWNKRFTSVLNKFGLTETSA
FT                 DPCVFVNNKGEFLTILAIHVDDGLIVSESMEVINLLMSDLEQEFEITTSSV
FT                 NHYLGLQIEQFKDGSIFLNQEAYARAVLERYNMENTNAVAIPADRGQMYSE
FT                 MGNDSKIINAPYRQAVGSLLYLSVATRPDITFSVHNASQHLEKPEKMHWNA
FT                 VKRILKYLKGTISYGLYYPRNEDIRLSVFCDSDYAGDVLTRRSTTGFVVKF
FT                 GEATIAWSSQRQKVVALSTTEAEYLASCQAVKEIVWIQSILQNIINQKEIT
FT                 TTLYMDSQSAIRLIKNPEYHKRTKHIDVKYHFIREKFKLGIFNLEHVSSTD
FT                 QQADILTKPLTRSNFEKIRQLLYVGDAKVLADRRLQKC"
XX
SQ   Sequence 4208 BP; 1503 A; 645 C; 888 G; 1172 T; 0 other;
     ggttatgggc ccagtaatca ctgagtgaca agttttgaac tgacaaaagt aaaactgaat        60
     agtgggtgca ttattgtagt attaacaaac ttgtgtgagc aaaagtttta aggttatttc       120
     tgctgtgtta aaatgatgga aaacgaaatt tctagaatta caaaactcaa aggcattgaa       180
     aattggtctg cctggaaatt tcaagttcgt gttactttaa gtgctatggg agcttgggac       240
     attgtcacag gtgaagtaat taaaccagag tgtaatgaca acatgaatac tgaagcaagg       300
     ctgaagtatg aaaaagatct tgtaagatgg aataagttgg acaatgcagc tcagaaagtt       360
     attggaacat caattgaaga caagccattg ctacatatca ttaactgtga atcttcagct       420
     gctatgtgga tcaaattact ttcagtttat gaacagaaaa acagtgtaag catacattta       480
     ctccagcagc aatggtataa cctaaaaaag gatatttcaa atgatatggc tacatatatt       540
     tcacaattag aagacctggt acatcggtta aggaatcaag gtgaaaatat ttcagattct       600
     atggtgatca caaaactgtt aatgacacta ccaaaaagtt ataaccattt tctgagtgca       660
     tgggaatcaa cacatccgga tcaacagaca ttagcaaatt tgacatcaag attattgatg       720
     gaggaaaaac gccttaatct tcaggaagac atgaaggggg aagcatttgc agcaggtaca       780
     caaggaagaa gtaatcattt taagaataat ccctgtcctg caaataaaaa ttcaagaaaa       840
     caaggtaagt gcttcaaatg taataaacct ggtcattggg ctaaagattg caaaaccatt       900
     tgtttcaagt gtaataaacc cggtcattgt gcaaaagaat gcagaagtac tgtatcaaag       960
     catcaaggtc agaatcagtg tgaactaaga ggggatgctt tgataagcaa aattttagca      1020
     gccaatcatg taaataaaaa tgcatggttt ttagattctg gtgctactga tcacatgtgt      1080
     aatgaaattg aatggtttgt aaattacagt ccatttgaga gtgaagtcca aatctgtatt      1140
     ggtgatggta gttatattac ttcacatggg aaaggcgaca taaacattct agcctttgat      1200
     ggtaaaaggt ggaatgaaaa gtatttgtca aatgttttat atgtgccaga tattcggttt      1260
     aatttatttt cacttggagc agcattagac aagggcatac aatttaaatc tgacaaggca      1320
     acatgcagac ttttcaaggg agagaatgtt gttgcagtgg gagttcgtga agaaaggttg      1380
     tataggatga aatttaagat ttcacttagt gaaaatgaca gtgttcaagc aaatgtggct      1440
     accaaggaag atcttaaaat ttggcacaaa agacttgctc atcaaaattt tccccatgtg      1500
     aaaaagtttc tgaaagatag gcagattcaa tttaaggaag aagataaaag tttgtgtgaa      1560
     gattgtgtcg ttgggaaaat tcataaatta cctttccaca aaagtgattc aaagtcaaaa      1620
     agggcaggtg aactgattca ctgtgatttg tgtggcccta tgcaagttga ttctattggt      1680
     ggttcaaggt actttctttt gttaaaagat gattattcac attggagaac tgtgtatttt      1740
     ctaagacata aatctgaagt tgcggaacac ttggaatctt tcataaaaac tactgaaaaa      1800
     caaattgaaa atggcattaa agtgatcaga actgataatg gactagaatt cattaaccat      1860
     gaagtgcgaa aaataatgca gaattatggg ataacacatc aaaaatcagt aacttattgt      1920
     cctcaacaga atggtgcagc cgaacgtgag aacagaactt tggtggagac tgcaagaaca      1980
     atgattcatg caagtgggct gccaatacga ctgtgggctg aagccattaa tacagcaact      2040
     tatattttga atagaacagg tacaagcagt gtcaatggca aatcacctca caaaatgtgg      2100
     aatggattgg attatgatgt gaccaaactc aggatatttg gagagatggt ttatacacac      2160
     attccaaagg agagacggca gaaatgggat tccaaaggtg aaaaaggttt tctagttggc      2220
     tacgatacag aagtaaaggg gtatcgtgtt tggttttctc ataaagatca agttaaaata      2280
     tatcgtgaca ttgttttcat gggcaaatta tataaggact gtcaatcaga gaaaactttc      2340
     aatactgaat gtgtaccttt cctaatatct gagacaactg atgataagca gactactcaa      2400
     gaggaaagcc tgaatcaaac aggagaagaa attagaatat ttgaagaaga atcaaatact      2460
     gaagccaact gtagatcttc tatgcaaaat gacaatcaag aggtcatcaa atctgagaat      2520
     aaaattagaa gcagcctacg agacaggtca aaaatcaaaa agcctgtcag atacgccaac      2580
     tatactactg taaattctac ctgcataacg aagtgctatg aacccatctc atatcaagat      2640
     gcaatggaat gtgacaatgc agaaaattgg aaacaggcta tgcgagaaga aatgtattct      2700
     cttaatctta atgaaacttg gatcttgact gagcccccag aaaaccaaga aatacttgac      2760
     aataggtggg tgttcaaagt gaagaggaga actgatggaa ctgtggatag atttaaagct      2820
     cgacttgttg ctagaggatt tcgacagaaa ttaggcatga actatactga aaccttcagt      2880
     ccagtggtta gatttgattc cataagaata atcttgtcca ttgcagcatc caaagcaatg      2940
     catatgaggc agtttgatgt gaaaactgca tttttataca gtgaaataga tactgaaata      3000
     tatatgaaac agccagaagg gtttgaggat ggtaccaaaa aggtatgcaa gctgaagaaa      3060
     agtatctatg gacttaaaca agcttctaga ctatggaata aacgattcac cagtgtgttg      3120
     aacaaatttg gactgacaga aacaagtgca gacccctgtg tttttgtcaa taataagggt      3180
     gaattcttga ccattctagc cattcacgtt gatgacggac taatcgtatc agaatctatg      3240
     gaagtaatta atttactaat gagtgatttg gaacaagaat ttgagataac aaccagcagt      3300
     gttaatcatt atctcggttt gcagatagag cagttcaagg atggctccat cttcttaaac      3360
     caagaggcat atgcaagagc tgtgctggaa cggtacaaca tggaaaatac caatgctgta      3420
     gctattcctg ctgatcgtgg acaaatgtac tctgagatgg ggaatgactc aaaaattatc      3480
     aatgctccat accgtcaggc tgttggaagt ttactatatt tgtctgtggc aaccagacct      3540
     gacatcactt tttcagtaca taatgctagt cagcatcttg aaaaaccaga aaagatgcac      3600
     tggaatgctg tgaagagaat cttaaagtac ctaaagggaa ctatttctta tggcttgtat      3660
     tatccaagga atgaggatat tcgtttgtct gttttttgtg attcagatta tgcaggagat      3720
     gttcttactc gaagatcgac cacaggtttt gttgttaagt ttggtgaagc tactatagct      3780
     tggagctctc agaggcaaaa agtggtggca ttatcaacaa ctgaagcaga atatttagct      3840
     tcttgtcagg ctgtaaaaga aattgtatgg atacagtcaa ttttacaaaa tattattaat      3900
     cagaaagaaa ttactaccac cttgtatatg gacagtcaaa gtgccatccg gttgatcaag      3960
     aaccctgagt atcacaaacg aacaaaacac atagacgtga agtatcattt catacgagaa      4020
     aaatttaagt tgggaatctt caaccttgaa catgtaagct ctacagatca gcaagcagat      4080
     attcttacca aaccactcac tagaagcaat tttgaaaaaa taagacagct actttatgtt      4140
     ggtgatgcta aagttcttgc tgacagaaga ctacagaagt gttaaacatt tgttaattga      4200
     agtgggag                                                               4208
//
ID   Copia-1_LMi-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-289
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3074-3074 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 289 BP; 72 A; 40 C; 46 G; 131 T; 0 other;
     tgttgtgata atcaattaaa atgtttatta ttattattat tatttttcta gtactgtgct        60
     actgtctgtt atgttttgtc cactttgcag ttgtctatgc tttgacataa tagttctttg       120
     caaagagtaa atgcatatat agactttttg tagatttact gctctttgtc tcttgcctaa       180
     tggttgtgtg cctcttgagt taaagataac tgtaccagtt tttcttgtta ataaaacttg       240
     tcattatcct tttgtgagaa tcagtggtat tatatttagc ctttcaaca                   289
//
ID   Copia-1_MeUr-I repbase;    DNA;    INV; 4123 BP.
XX
AC   .
XX
DT   17-DEC-2019 (Rel. 26.06, Created)
DT   17-DEC-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4123
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3024-3024 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..3934
FT                 /product="Copia-1_MeUr-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MTDDFESSGSICGIKKLSGATDFAIWKFQVKNYLECK
FT                 NWWEAVESEEVTPALKEADRKARTTLCLLLEPSCFAHVYNGKTAREVWNNL
FT                 CGAYEDNGWGRRISLQRKLWSCKLDTFSCMEKYISGVISISQELAAIDAKV
FT                 SDDWLISILLAGLTVEYNPMIMAIDNCGKEISLEQIKTKLMQEANRQADVR
FT                 AGTEADEQALVSKKRNVNVPKKFVRRSVMKCFKCHKPGHKASQCTKLYADV
FT                 CMSTTDQNKKDQNTWYVDSGCSSHMTYNANKLHDYRKVNDNLKIKVANGDE
FT                 ISVEGKGNAIPKISGRSNLILKNVLHVPRLSMNLISVSDLVKNDYSVNFDK
FT                 RGCTIQNKNDEVVARCNEVDGIFKLKENINCVNVALSNKPLSNLWHKRLAH
FT                 LGQKYMLMLKKMVTGIQFNTKQKIEPCIPCINSKTCKSPFKNKGTRAEQIL
FT                 EIVHTDLCGPMEEASFAGSFYMLLFIDDFTRKTHVYFLRNKNQTFDKFCEY
FT                 KAEVERETGKLIKCIRSDNGKEFCNHAFDKFLKSFGIKHQKTVPYTPEQNG
FT                 VAERANRLIIEKARTLLIEANLSKKFWAEAVNTVVYLKNRSPTKAVKNKVP
FT                 QELWSNQKVDLSHLKVFGCLAYALKPKQKRQKLDTKTEALIFIGYSEITKG
FT                 YRLIHPQTGKVTVARNVKFLENVFPDDSMKVTKNTVVPMSIEEEQIESVIQ
FT                 DVISDVHSTSEDDFQEAETSNNEIVSGESSTEPTIERYNLRPRKPVDYTCT
FT                 YVNALAAIDGNPITMKEALSRPDCELWRKAMNDELQSLKENQTWKLVDLPP
FT                 DKKPIQCKWIFKIKRDSDGKISKYKARLVAKGFTQVRGIDYDETYSPVVRS
FT                 STMRLLFALAVEYDWQIDQWDVTTAFLYGKLKEDIYMLQPEGAVVKKQEAK
FT                 VCKLQRSLYGLKQASNAWFQELDKEMLSLGFIQSKIEPCLYQKLLADRDRI
FT                 VVVIYVDDIFVFCSSNHESEKVKLKTGLLKKFKVRDLGFARHVLGMRLRRD
FT                 KNTIFIDQEQYINNVLKEFEMTDCKPVNTPMEAGLRLEKASDSGCRLPYQN
FT                 LIGCLNYLAQNSRPDIAHAVSVLSQFNSCYDEIHFKSAKRVLRYLKGTSDF
FT                 AVTFTKTGNFDLLGYVDADWGGSYDRKSFTGMIFKLGDSLISWESRKQRCV
FT                 ALSSTEAEYISLSQASKEAIYLRSLLSYLVDDTCDKPVVIYNDNQSAHHIA
FT                 KNKMNHNRTKHIDIRFHFVREAISNEAIEVRYAPSSEMVADMLTKSLSGPK
FT                 LKLALARLPIKGAGNVFSVT"
XX
SQ   Sequence 4123 BP; 1435 A; 577 C; 898 G; 1213 T; 0 other;
     ggttatgggc ccaggaatat aaaaaaaggg ctgaaatata aaaacacaag atatagtgaa        60
     atttgagtgg taacgtgaaa atctatcgaa gatgacagat gattttgaat catccggttc       120
     catttgtgga ataaagaagc ttagtggtgc gacagatttt gcaatttgga agtttcaagt       180
     taaaaattac ttggagtgca aaaactggtg ggaggctgtt gaatctgaag aggttacgcc       240
     agcactgaaa gaagctgata ggaaggcacg aaccacctta tgtctattgt tagagccatc       300
     gtgttttgct catgtatata atggcaaaac ggcgcgtgaa gtatggaaca atctgtgcgg       360
     cgcatatgaa gacaatggct ggggtagacg aatttcacta caaagaaaat tatggtcctg       420
     taaattggat acattttcgt gtatggaaaa atatatttca ggagtgatat ccatttcaca       480
     agagttggct gcgattgatg cgaaagtgtc tgatgactgg ttaatttcca tcttgcttgc       540
     tgggttaaca gttgaatata atccaatgat aatggcaatt gacaattgtg gaaaggagat       600
     tagcttagag caaattaaaa caaagttaat gcaagaagct aatagacaag cggatgtacg       660
     ggctggcaca gaagctgatg aacaagcact tgtttctaaa aaacgaaatg taaatgtacc       720
     gaaaaagttt gttcgaaggt cagtgatgaa atgttttaaa tgccacaagc caggacataa       780
     agcatcacaa tgtacaaaac tgtatgctga tgtttgtatg agtactactg atcagaataa       840
     aaaggatcaa aacacatggt acgtagacag tggttgttct agtcatatga cttataatgc       900
     aaacaagtta catgattatc ggaaagttaa tgataattta aaaattaaag tggctaatgg       960
     tgacgaaata tcagttgagg gcaaaggaaa tgccatacca aaaatcagcg gaagatctaa      1020
     tttaatcttg aaaaatgtat tgcatgttcc tagattatca atgaatttga tatcggtgag      1080
     tgatctagta aaaaatgatt acagtgtaaa ttttgataaa agaggttgca ctattcagaa      1140
     taaaaatgat gaagtagttg cgagatgtaa tgaagttgac ggcattttca aattaaagga      1200
     gaacattaat tgtgtcaatg tagcattgtc aaataaacct ctgtcaaatt tatggcataa      1260
     aagattagct catttaggac aaaaatatat gctgatgtta aaaaaaatgg taactggtat      1320
     acaattcaac acgaaacaaa agattgagcc gtgtattcca tgcatcaaca gtaagacatg      1380
     taaaagtcca ttcaaaaata aaggtacaag agctgaacaa attcttgaga ttgttcacac      1440
     agatctttgt ggtccaatgg aggaggcatc atttgctggt tctttttata tgcttttatt      1500
     tatcgatgat tttactcgca agacgcatgt ttatttttta agaaataaaa atcaaacttt      1560
     cgataaattt tgtgaatata aagcagaagt agagagagag actggtaagt tgataaaatg      1620
     cataagatct gataatggta aagagttttg taaccatgcc tttgataaat ttttgaaatc      1680
     atttggtata aagcaccaaa agacagtacc ttatacgcca gaacaaaatg gcgtggcaga      1740
     gagggcgaac aggttgataa ttgaaaaagc aagaacgttg cttattgagg caaatttaag      1800
     caaaaaattt tgggctgaag cagttaatac tgtggtttat ttgaaaaatc gaagtccaac      1860
     aaaagccgtt aaaaataaag tacctcaaga actttggtca aatcagaaag tagacttgag      1920
     ccatttaaaa gtcttcggat gtttagctta tgctctaaaa cctaagcaga aacgacaaaa      1980
     gcttgatacg aagacggagg ctttgatttt tattggctat agtgagatta caaaaggtta      2040
     tcgactgata cacccacaaa caggtaaggt aactgttgca agaaatgtaa aatttttgga      2100
     gaatgttttt ccggacgaca gtatgaaagt aacgaaaaac acagtagttc ctatgtcaat      2160
     agaggaagaa caaattgaat ctgtgatcca ggatgttatt tctgatgttc attcaactag      2220
     tgaagatgat tttcaggaag cagaaacatc aaacaatgag attgtatctg gagaatcaag      2280
     tacagaaccg actatagaaa gatacaactt gcgtcctcgc aaacccgtcg attacacctg      2340
     cacgtatgtc aatgctctcg cggcaattga tggtaatccg attactatga aagaggctct      2400
     atctagaccc gattgtgagt tatggcgaaa agcgatgaat gatgaattac aatcgctgaa      2460
     ggagaaccaa acgtggaagt tggttgattt acctccagat aagaagccga ttcaatgcaa      2520
     atggattttt aagattaaac gagacagtga tggtaagatc tctaagtata aagctagact      2580
     ggtagcaaaa ggatttacac aggtacgtgg catagattac gatgaaactt attcccctgt      2640
     agtaagaagc tcgaccatgc gactgttgtt cgcattagct gtagaatatg attggcagat      2700
     tgaccagtgg gatgtcacaa ctgctttttt atacggaaaa ttaaaggagg acatctatat      2760
     gctccaacca gagggcgctg tcgtcaagaa acaagaggcc aaggtatgca aattacagag      2820
     gtcgttatat ggacttaaac aagcatcaaa tgcttggttc caagagcttg ataaggaaat      2880
     gttaagttta ggtttcatac aatcaaagat agaaccctgt ttataccaaa aactgttagc      2940
     agatagggat agaattgtag tagtaattta tgttgacgat atttttgtgt tttgtagtag      3000
     taaccatgaa agtgaaaaag taaaattaaa aactggttta cttaaaaaat ttaaagttag      3060
     ggacttgggt tttgctaggc acgtattagg catgcgactt aggagagata aaaacactat      3120
     ttttattgat caggaacaat atataaacaa tgttttaaag gaatttgaaa tgacagactg      3180
     caagccagtc aataccccga tggaagctgg tctcagatta gagaaagctt cggattccgg      3240
     ttgtaggttg ccatatcaaa atttaatagg atgtttgaac tatttagcac aaaatagtcg      3300
     cccagatata gcgcacgctg taagtgtatt atcacaattc aattcttgtt atgacgaaat      3360
     tcatttcaag agtgcgaaac gtgtgcttag atatttgaag ggaacatctg attttgctgt      3420
     tacttttaca aaaacaggaa attttgattt acttggctat gttgatgcgg attggggtgg      3480
     gtcatatgat agaaaatcct ttactggcat gatatttaaa ttaggcgata gtttaatatc      3540
     gtgggaaagt cgtaagcaga gatgtgtggc tctgtcttca acagaagcag aatatataag      3600
     tcttagtcaa gcttctaagg aagctattta tttaaggagt ttgttgtcgt atttagtaga      3660
     tgatacttgt gataaacctg tagtcattta taacgacaat cagtctgcac atcacatagc      3720
     taaaaacaag atgaaccata ataggactaa acatatcgat attaggtttc actttgttcg      3780
     cgaagcgata tcgaatgagg cgattgaggt gcggtatgct ccatcaagcg aaatggtggc      3840
     ggacatgcta acaaaatctt tgtcaggccc caaattaaaa ttagctttag cgagattacc      3900
     cattaagggg gcaggtaatg tatttagtgt tacttaattt ttgatatgtg atgtatttta      3960
     ggttgtaatg gtaaatctct gttttgttat gttttatttt atgtttgagt ttatgttttg      4020
     ttttatgtaa tgtgtagacg tagttgaata ttttaatatt tctgtattta acttaggtgt      4080
     gctcaactta ggttattaaa acatctgcca gattaagggt gcg                        4123
//
ID   Copia-1_MeUr-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   17-DEC-2019 (Rel. 26.06, Created)
DT   17-DEC-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-163
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3036-3036 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 163 BP; 67 A; 18 C; 28 G; 50 T; 0 other;
     tgttggaggt tgtatataaa taaaatatgt aatctgacgg atgtgtgaaa aataagaaaa        60
     tagaatatag tttgaaataa atgtctgaaa cgaaaagtcg tttccctata ttatatatat       120
     aaaatccctg taaataatgt aggagcagcc acattttcca aca                         163
//
ID   Copia-1_MoPha-I repbase;    DNA;    INV; 4259 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4259
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1156-1156 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..4249
FT                 /product="Copia-1_MoPha-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MAYSTINSTRLELLSKDNYDTWRIQAEALLIKNDTWG
FT                 YVSGEKPRPVVSTDPNTRASSQAAYDAWTTEDRKARSDLILSIHPSELKQI
FT                 KGCDTSKSVWDKLESIYASKGPARKAALLKNLMLRKMPEDGNVKDHLNDLF
FT                 DAVDKLQSMNVEVNGDMLAIILLYSLPDSYDTFRCAIESRDDLPDAETLKI
FT                 KIIEESEARKRRSPERTSNALLAKQSSRQVPTHKNKTGKENKRSSPSREKR
FT                 IKCNYCKKSGHKAANCFAKRNSESKTSHATETALLTDDTGKSKGWCLDSGC
FT                 TSHLCNDKELFVNTANISSGLKLANNEVTKVRAMGDVRITASVSKDERKIR
FT                 LKDTLFVPDIRTNLLSVAKIVDNQHEVLFTKNHAVVRDTRGNTTMIAKRIN
FT                 NLFYLQESPHHAYAATDNGHARIRTWHERLGHLNARDVAKMYNTQAVIGMK
FT                 LDSNLTTIDCKICAAGKLTQAPFPTRGPRTSGVLDIVHTDVCGPMRQESEG
FT                 GARYFVTFIDDYSRWCEVYFIRSKSEVPEKFKEFMNLAERQTGRKIKAIQS
FT                 DNGKEYCNATMDALLKEHGITRRLTVPHTPEQNGTAERKNRTLVEAARCMI
FT                 IQSGLPPSLWAEAIATANYIRNRCTTKSIDSGTPFERWTDRRPNIAHMRIF
FT                 GSNVFILDKSPGKGKFDPRGQDGIFVGYSDKSKAYRVWSPKDKRIYVSRDV
FT                 KFFNEFNTKETFEDIVTSETKSGRSRILRFEETEVGPNQSDTTTDQSDDHE
FT                 PVEAITEDDGETDIVDTPKRKAGRPKGAVRKLIVPTKDYNLRSRTQGQGPT
FT                 STAIELSSDDDTEPHESMYAFLASEIPLSQAINGEDASEWKDAIHDEIESL
FT                 VTNDTWELVDRPDDCNVVGCRIVLRNKFRADGSLEKRKARIVARGFSQRPG
FT                 IDFQDTFAPVARLSSLRMLVAISAQTGASISQLDITSAYLHGDMDNTVYME
FT                 VPKLLDEMLARIARDVSDRNTQSKARKMLSSLRQGHKVCLLRKAIYGLRQS
FT                 GRQWHFKLSRVLKGAGLIPTNADSCVYVDKYKTIFLLVYVDDILIVTKDSK
FT                 RKDDIVKALSEQFAIKDLGVAKYCLGIEIIRNGDNILLSQAGYIKSLLAKF
FT                 EMTDCKGAATPLTQGFKPVAINQDNDMSLPFKELVGSLMYVAVATRPDISH
FT                 AVSMLSQFNQRYDRIIWKEAKRVLRYLKSTSSLALCFKPTTRGLYGYVDAD
FT                 WGNCPLDRRSYTGMAFILGGAAISWESRKQRTVALSSTEAEYMGLTDAAKE
FT                 AIYFIGFLKELGLDDLTNVVIFNDNQGAGELARNPVYHGRTKHIDVRFHFI
FT                 REALRNWSIQLRYKPTNEMPADVLTKGLTSGKHELCVRGLGLDNVSVEKHP
FT                 H"
XX
SQ   Sequence 4259 BP; 1311 A; 1054 C; 1057 G; 837 T; 0 other;
     ggttatgggc ccagactaac gcacttcttg tcgcacagcg agagatccgt ttttctgcat        60
     cgcgtcacta agacagcgaa ctgccttgtg aagtttagtg tcggtcgcaa caatcgcaaa       120
     aaccgtacag tcaatctcgc acacacggac aaagacaatg gcatatagca ccataaactc       180
     gactcgccta gaactcctat ctaaggacaa ttatgacacg tggaggatac aagcggaagc       240
     cctactgata aaaaacgata cctggggcta tgtttctgga gaaaaaccaa gaccagtcgt       300
     gtcaaccgac ccgaacacga gagcgtcatc ccaagccgca tacgacgcgt ggactaccga       360
     ggatcgcaaa gccaggtcag atctcatcct ttctatacat ccgtctgaat taaagcaaat       420
     caaaggttgt gatacttcca aaagcgtctg ggacaagctg gaatcaatct acgcgtccaa       480
     ggggcctgcg cgcaaggcag ccctgctgaa gaatctcatg ctgcggaaga tgccagagga       540
     tgggaacgta aaggatcatc taaacgacct tttcgacgca gtggacaaat tacaatccat       600
     gaacgtcgaa gtcaatggag acatgctcgc catcatctta ttgtatagtc ttccagacag       660
     ctatgacacc ttccgatgtg ccatagagtc tcgtgacgat ctgccagacg ccgagacatt       720
     aaagataaag ataattgaag agagcgaagc caggaaacga cgatcaccag aacggacgtc       780
     caacgcgctg ctcgcaaaac agtctagtcg acaagtgcca acgcataaga ataagacggg       840
     aaaggaaaac aagcgctctt ccccttccag ggaaaaacga ataaaatgca actattgcaa       900
     gaagagtgga cacaaggctg caaactgctt tgccaaacgg aactccgaat ctaagacgag       960
     tcacgcgaca gaaacggcat tattaacgga tgatacagga aaatcaaagg gatggtgctt      1020
     ggatagcggc tgcacctccc acctttgtaa cgacaaagaa ttgttcgtca acaccgcgaa      1080
     tatctccagc ggattgaagc ttgcgaacaa cgaggtcaca aaagtccgag cgatgggaga      1140
     cgtcaggata acggcttcag taagcaagga cgagaggaag ataaggctca aggacaccct      1200
     atttgtcccg gatataagaa ccaatcttct atcagtggct aagattgtcg acaaccaaca      1260
     cgaagtgctc ttcaccaaga atcatgccgt tgttcgggat acccgaggta acacaactat      1320
     gatcgccaaa cgtattaata atttgtttta tttacaggag agtccacacc atgcatacgc      1380
     ggccaccgac aacgggcatg cgcgaatccg aacgtggcac gaacggctcg gacacctgaa      1440
     cgcaagggac gtcgcaaaga tgtacaatac tcaagcggtc atcggcatga agctcgattc      1500
     caatctcact acgatcgact gcaagatatg cgctgcggga aagcttacac aagcaccgtt      1560
     tccaacgaga ggcccaagaa cctccggggt attggacatc gtacacacag acgtatgcgg      1620
     acccatgcga caggaatccg agggcggagc tcgatacttc gtcaccttta ttgacgacta      1680
     cagccgctgg tgtgaagtct atttcatacg aagcaagagc gaggtccccg agaaattcaa      1740
     agaattcatg aacttagctg agaggcaaac cggacgaaaa atcaaggcca ttcagtccga      1800
     taacgggaaa gaatattgta atgccaccat ggacgcatta ctcaaggaac atggcatcac      1860
     ccgtcgtttg acagtgcctc atacgcccga gcagaatggc acagcggagc gcaaaaacag      1920
     aacgctcgtg gaagcagcaa gatgcatgat cattcaatcg ggactacctc catcactatg      1980
     ggctgaagcc atcgcgaccg ccaactacat acggaaccgg tgcaccacaa agagcataga      2040
     ttcagggaca ccctttgaaa gatggacgga tcgacgtccg aacatcgcac acatgcggat      2100
     attcggaagc aacgtattca ttctggacaa atccccaggg aagggaaaat tcgaccctcg      2160
     aggacaggat ggtatctttg tcggttattc cgataagtct aaggcgtaca gggtatggag      2220
     tcccaaggac aaaaggatct acgtctcccg ggacgtcaaa ttcttcaatg aatttaatac      2280
     gaaagaaaca ttcgaggaca tcgtaacgtc agaaacgaag agcggtcgtt ccaggatctt      2340
     gagattcgaa gaaacggaag taggaccgaa ccaatcagat acaacaaccg accaatcaga      2400
     cgatcatgaa ccagtcgaag caattactga ggacgatgga gagacagaca tcgtcgacac      2460
     gcccaaacga aaggccgggc gaccaaaggg agctgtgcga aaattaatcg ttccgaccaa      2520
     agattacaat ctacggagtc gtacacaagg tcaaggaccg acgtctacgg ccatcgagct      2580
     atcttcggac gatgacacgg agccacatga atccatgtac gcatttttgg ccagtgaaat      2640
     cccgctgtca caagcaatca acggcgagga tgcctctgaa tggaaggacg ccatccacga      2700
     cgagatcgag agccttgtaa ccaacgacac gtgggagctc gttgatcgac ccgatgactg      2760
     caatgtcgta ggatgccgaa ttgtcttgcg aaacaaattc cgtgcggacg gaagcctaga      2820
     gaagagaaag gcaaggatcg tggcaagagg attttctcag cggccaggaa tcgacttcca      2880
     ggataccttt gcgccagtgg cgcgactgag ttcgttgagg atgcttgtcg ccatatcagc      2940
     tcaaacagga gcgtcgatat cccagctaga cattacctca gcatacctac acggagacat      3000
     ggacaatacg gtatacatgg aagtaccaaa gcttctagac gagatgcttg caagaatcgc      3060
     gagagacgtc tccgacagaa acacgcagag caaggcaagg aagatgctgt ccagccttcg      3120
     acagggacat aaggtctgcc tattacggaa ggcgatatac gggctgcgtc aatccggcag      3180
     acaatggcac tttaagctca gccgagtact caaaggcgct ggcctaatcc cgacgaacgc      3240
     cgattcgtgt gtttacgtcg acaagtataa aacaatattc ttattagttt acgtcgacga      3300
     catcttgatc gttaccaaag atagcaagcg caaggacgat atcgtcaaag cattaagcga      3360
     acaattcgcc atcaaggatc tcggagtggc gaaatactgc ttgggtattg agatcatcag      3420
     aaacggagat aatatacttc tctcccaggc aggttacatc aagagtctgc tggccaagtt      3480
     cgagatgaca gattgtaaag gcgctgctac accattgact caaggcttca aaccggttgc      3540
     aataaaccaa gacaacgaca tgtcattgcc ttttaaggag cttgtgggga gcttaatgta      3600
     cgtggcggtc gccactaggc cggacattag tcatgctgta agcatgttaa gccaattcaa      3660
     ccaacgttac gatcgaatca tttggaagga agctaagcga gtgcttagat atttgaagag      3720
     cacctcttcc ttagccctat gcttcaaacc aaccacaaga ggtctgtacg ggtacgtcga      3780
     cgcggactgg ggaaattgcc cactcgacag gcgatcgtac acaggcatgg catttattct      3840
     cggcggagct gcaatctcgt gggaatcccg caaacagaga acggtcgccc tttcgtccac      3900
     cgaggcggaa tacatggggc taacagacgc agcgaaagaa gctatctact tcatcggatt      3960
     cttaaaggaa ctaggtctcg acgacctgac caacgtcgtc atctttaacg ataatcaagg      4020
     agcaggggaa ctggcccgca atccggtata tcatggcaga acgaagcata ttgatgtgcg      4080
     attccatttc attcgtgaag cgctccgcaa ttggtccata caactcagat acaagcccac      4140
     aaatgaaatg cctgccgatg tcctcaccaa gggactgacc agcggaaaac atgaactttg      4200
     cgtccgagga ctggggctag acaatgtgtc cgtagaaaaa catccacatt gagaggggg       4259
//
ID   Copia-1_MoPha-LTR repbase;    DNA;    INV; 369 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-369
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1125-1125 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 369 BP; 92 A; 102 C; 60 G; 115 T; 0 other;
     tgttggatat tcaacacggc cgccctcatc acgcggtatc cacttgagac ctcccggcag        60
     gggttctcga ctgcaccatt ggtaacactg gcgacgtgga ccaataatcg atcgcggcac       120
     tcgcgatacc gagtgcgact ctatcgatta tactcatatt actcgaaccg tatacacaca       180
     ttctttttct tacttttcct tcttcagtta atacatccaa atatatctct ccaccgtcga       240
     gtattcaacc gtaattactt ttgtactcat cgacaccttg taatactgtg ctttactaaa       300
     tacacgaaat cgtgtaacat tgtctaaagt gtttattttc tcgtcgtcac ccactacctc       360
     gagcttata                                                               369
//
ID   Copia-1_RP-I repbase;    DNA;    INV; 2352 BP.
XX
AC   ACPB02045731;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_RP_;
KW   Copia-1_RP-LTR; Copia-1_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02045731; Positions    3563    1212.
XX
CC   'TTAT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..1833
FT                 /product="Copia-1_RP-I_1p"
FT                 /translation="MNLLNEVMEIDKLKKPEDFQCWKFKITILLKANGLYG
FT                 IVSGEEASPPQDHKDYNLFVQRDAKAQKLIILSIDKIPLTHVMTCNNSKEM
FT                 FKKLKEVYERDSTQQKFDLMQEFFNFKFNNSVDISTNISILENLVFRLKAL
FT                 NNEINDSMVMSKILTSLDSKYRHFWSAWESTPNEEKTLSNLITRLANEEKR
FT                 FSCSEDVAVAFKSVIKNKTNQTYSTPVKCFNCSKPGHISKFCPNKRQSKFC
FT                 KICKKNNHEEKNCYFRKNKHPEKHDISFLANEASNSKWILDSGSSSHITND
FT                 EIVLQGKRNSSGLYSVDLDIKERVEANFAENLNPRTWHRRLGHVSQECINK
FT                 LSGMVDGLNLKNERPQFDCETGMQANLNKIISLEDEVKQMYVELRASKDEL
FT                 LKKIEEESLMTNKYMKGKGELKTDVKPLENHILELNEEKRNLECKLKKIQS
FT                 ELHYNQVSEDKIQTDIITAPNGNSPVKGREITGKNRKERRKKLLQLLTEKE
FT                 KSERNLEKKEKKLRFADEPENTPVETYAKELEQLSETSDREVKEEEEDTVG
FT                 DEKSATTYQMLKIKGLTPKRKKEVRNPRVRYKNK"
XX
SQ   Sequence 2352 BP; 968 A; 327 C; 466 G; 591 T; 0 other;
     ggttatgggc ccaggccgtt gtccatctta aaaactacta aaggaatata aaggttagtt        60
     gcacgttgtt acaataaaaa tccgtaaaaa atgaatctat taaacgaagt gatggagata       120
     gacaaattga agaaacccga ggacttccag tgttggaaat ttaaaataac aattttattg       180
     aaggccaatg ggttatatgg cattgtgtct ggggaggaag cgtcacctcc acaagaccat       240
     aaggactata atttgtttgt tcagagggac gcaaaagcgc aaaaacttat tatcctctca       300
     atagacaaaa taccactgac acatgttatg acttgcaata actctaaaga aatgttcaaa       360
     aaactaaaag aagtgtatga gcgtgattca acgcaacaaa aattcgattt aatgcaagaa       420
     ttttttaact tcaagtttaa taatagcgtt gatatatcaa ctaatattag cattttagaa       480
     aacctggttt ttcggttaaa agccctgaat aatgaaataa acgacagcat ggttatgtca       540
     aaaattttaa ctagtcttga cagtaaatat agacattttt ggagtgcctg ggagagtacc       600
     cccaacgagg aaaaaacact gtcaaattta atcacaagac tagcaaatga ggagaaacgt       660
     ttctcatgct cagaggatgt tgcagtagca ttcaaaagcg tgattaaaaa taaaacaaat       720
     caaacttatt caacaccggt aaaatgtttt aattgttcga aaccaggaca catatctaag       780
     ttttgcccca ataagaggca aagtaaattc tgtaaaatat gcaaaaagaa taaccatgaa       840
     gagaagaact gctattttag aaaaaataaa caccctgaaa aacacgacat atcttttctg       900
     gctaacgaag catcaaactc caagtggata ttggattcag gatcttcgag tcacataacg       960
     aatgatgaaa tagtgttaca aggaaaacgg aattccagtg gcctatactc ggtagatctg      1020
     gatattaagg aaagagtaga agcgaacttt gcagagaatt tgaatcccag aacatggcac      1080
     agacgtttgg gacatgtaag tcaagagtgt attaataaac tcagtggaat ggtggatgga      1140
     ttgaatttaa aaaatgaaag acctcagttc gactgcgaga caggtatgca agctaattta      1200
     aataaaataa tttctttaga agatgaagta aaacaaatgt acgtagaatt acgagcgtct      1260
     aaagatgaat tgctaaaaaa gatcgaagaa gaatctttga tgactaataa gtatatgaaa      1320
     ggaaaaggtg aattaaaaac ggatgttaaa ccactagaaa atcatatttt agaattgaat      1380
     gaagaaaaaa gaaatctcga atgtaaactt aaaaaaattc aaagtgaatt acattataat      1440
     caagttagtg aggataaaat ccagactgat ataataactg caccaaatgg aaattcgcct      1500
     gttaagggta gagaaatcac tgggaaaaat agaaaagaga gacggaagaa attactgcaa      1560
     ttacttactg agaaggagaa atcggagaga aatttagaga aaaaggagaa gaaattaaga      1620
     tttgctgatg aaccagaaaa cacgcctgta gaaacttatg ccaaagagct ggaacagctg      1680
     agtgaaacca gtgacagaga agtcaaagaa gaagaagaag atacagtagg agatgaaaaa      1740
     agtgctacaa cctaccaaat gctcaaaatt aaaggattaa cccctaaaag aaagaaagaa      1800
     gtgagaaatc cgcgagtaag gtataaaaat aaatgaagaa gagcttatag cttactcaga      1860
     cgccgactat gcgggagacc ctgagactcg tcgctcaaca actggattcg tgatatacta      1920
     cggaggcggg ccggttagct ggtgctcgcg aaagcaaaat atagtggcat tatcaagtgc      1980
     ggaaagtgaa tatattagta gtgccgaatg ttgtaaagag ttaattttta taaaagaact      2040
     catatatgaa ctaactggta aaaatttgaa ttgtacatta tttatagata ataaaagtgc      2100
     tattgatata ataaagaatg gtaacataaa taaaagatca aaacacatag atgtaagata      2160
     ccattatata aaagaaaaat atgacaactg tgaaattaat gtaaaacatt gtagttcgaa      2220
     tgatcaagtc gcagacattt tcacaaaacc tttaggtgga gtaaaattca ataaatttaa      2280
     agacttaatt gtttcataaa taaatgcata cctgttatag ataaagataa aattaggggg      2340
     tgtgttaaat aa                                                          2352
//
ID   Copia-1_RP-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   ACPB02045731;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_RP_;
KW   Copia-1_RP-I; Copia-1_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-275
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02045731; Positions    1211     937.
XX
SQ   Sequence 275 BP; 80 A; 34 C; 62 G; 99 T; 0 other;
     tgtttaatta atacattggt aattttgtct ttgtgggttg gcggcattgt ggcgtcagta        60
     atgcggcttg tagcgtctgt acagcgtcat tgttgttgtt gttgttgttg ttgttgttgt       120
     tgatgtgtac tgggagttag cgtcaagtgt atatagtacc ttgtgtaaga aagtacaatt       180
     aaaataaaaa ctataaaaca tataagtgtt gtttattcgt agcagctgca gcagaaacct       240
     cacaattaaa aacattaaca agaaaacttt taaca                                  275
//
ID   Copia-1_SI-I repbase;    DNA;    INV; 4245 BP.
XX
AC   AEAQ01003789;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_SI_;
KW   Copia-1_SI-LTR; Copia-1_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01003789; Positions    5947    1703.
XX
CC   Positions [1722-2225] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..3236
FT                 /product="Copia-1_SI-I_1p"
FT                 /translation="MRTLFMAHRLWDIVNGSTPMPEAGAARETWSVQNANA
FT                 MYLLSSTLEPEQKRPMLTCENACEMWKKLARIHEQKSASNKLLLSTRLYEY
FT                 RMSASDSITQHITKVQNMAAQLLDVGETVTDTVIMAKILGSLTPKFAKFQT
FT                 AWDNMPPDMQTLQNLEERLLREEARMTENDESESAFVVSKKSKEKSKSRVS
FT                 SREAKNKKDGKDIRDRKDKKKVRCFRCQGLGHFARECKKDKKEGNRGTSES
FT                 SDCAFVVESGKSGAGKSGFGEIPTDLAREILKADKKDCWISDSGASQHMTF
FT                 RREWLRDFRELPMGEHEVALGDDKVCYALGVGTVDIEKFVNGKWIASYIKT
FT                 VFYVPELKKNLFSVGACARKKIGVYFFDEYVKFDNRGFTAGYGVIQTNNLY
FT                 RMLFKTKCAEDENEASVAKTSFLAWHERLGHVNVRAMRKLVSEKLIDGIEI
FT                 TDGAEDFCGACQEGKSQRKAFKKTRVRAGTEPGEVIHSDVCGPMSVESIGG
FT                 SRFMVVFKDDATNFRYVYFLKHKNEVLEKFKELDRLIKNRFGRNIRVLRSD
FT                 NGLEYKNRAFDEYTDKRGIEREYTAPYTPEQNGKAERDNRTLVESARTMLL
FT                 AKGLPKNLWAEACNTAVYLANRAGASSMRVGATPYELWMGVKPNLHHLKIF
FT                 GSEAYVNVPQIKRTKLDARAKKMIFVGYDSTSSNYRIFDPVSKRVSVSRDV
FT                 TFRETTGSVKLSKPKDAREVILPKVEREALVPAEGDSFDEEEEDDKVFENA
FT                 VDDEQRDEGRQQVNEPVRKLRDRSLIKKPSRYDAEAAECDIPITYREAVES
FT                 KDAGKWREAIDSELESHEKNGTWHLVKRDPKMKPIDSKWVFKKLKNEKGEI
FT                 RRFKARLCARGFMQEKNIDYTETFSPVVRYDSLRVLLVASKNLEIAQFDVQ
FT                 TAFLYGTLDEEIYMETPEGLNMDEETREEQVCRLVKSLYSSSHRDAGTKSS
FT                 VRFCESSGSKKHPRISVYSWER"
XX
SQ   Sequence 4245 BP; 1234 A; 860 C; 1306 G; 845 T; 0 other;
     acgggttatg ggcccagtca cgctgactgc gaggcgtttg cggaaacgag tgtgaatcgt        60
     tgagttgtcg agcgtgcgaa tgcgtcgcgc gaaagagaaa aaaatcgcga gtgagtgaaa       120
     acgtggtgcg cgcgaagcgc cggtagagac acgtgagact gcagggggcg gccatattgg       180
     catcgtgttc gcgagtgaat tcaaagcgct gtgcgagcga aaagtaatcc ccgatagctg       240
     aagcgatctc agtaaagaat atcacgaaat tcgatggtac ggattaccag agctggaaat       300
     ttgagatgcg gacgttattt atggcccatc ggttatggga tatcgtaaat ggctcgacgc       360
     cgatgccgga agcgggggcc gcgcgtgaaa cgtggtcagt acagaacgcg aacgcgatgt       420
     atttgttgag ctcgacgctc gagccggaac aaaagaggcc catgttaacg tgtgagaacg       480
     cgtgtgaaat gtggaaaaaa ttagcgcgaa tacatgaaca gaaatcagca tcgaataagc       540
     tgttgctgtc gacgcgttta tacgagtatc gcatgagtgc gagcgactca ataacgcagc       600
     atattacaaa ggtgcaaaat atggcagcgc agttgctcga cgtgggcgaa acggtgaccg       660
     atacggtgat catggcgaag atcctgggga gtctgacgcc gaagttcgcg aaatttcaga       720
     cagcgtggga caacatgccg ccggatatgc agacgttgca gaatttagaa gagcggttgc       780
     ttcgagaaga agcaagaatg acagaaaacg acgaaagtga aagtgcgttc gtggtttcaa       840
     agaaatcgaa agaaaagtcg aaatcgagag tgagttcgcg agaagcgaaa aataaaaagg       900
     acggtaaaga cattcgagac agaaaagata aaaagaaagt gcggtgtttt cggtgtcagg       960
     ggctcggaca ttttgcgcgc gagtgcaaaa aggacaaaaa agaggggaat cgtggtacga      1020
     gtgaatcgag cgattgtgcc tttgttgtcg agagcgggaa aagcggtgcc ggtaaaagcg      1080
     ggttcggcga gataccgaca gacttggcgc gcgagatact gaaagccgat aagaaagact      1140
     gctggatttc cgacagcgga gcgtcacagc acatgacgtt ccgacgcgag tggttgcgag      1200
     actttcgcga gttaccgatg ggagagcacg aagtcgccct cggagacgat aaagtatgtt      1260
     atgcattggg agttggtaca gtcgacatcg agaagttcgt gaacgggaag tggatagcat      1320
     cgtatatcaa gacagttttt tacgtaccag aactgaagaa gaacctattt tcggtcggcg      1380
     cgtgcgcgag aaagaaaatc ggggtgtatt tcttcgatga atacgtgaag ttcgacaacc      1440
     gaggtttcac cgccggttac ggtgtgatac aaacaaacaa tttgtatcgg atgctattca      1500
     aaacaaagtg cgcggaggac gaaaacgaag cgagcgttgc gaaaacgagt tttctggcgt      1560
     ggcacgagcg actcggacac gtgaacgtac gagcgatgcg taaactggtg agcgagaagc      1620
     ttatcgacgg catcgagatt actgatgggg cggaagattt ctgcggagcc tgtcaggagg      1680
     gcaaatccca gcggaaggcg ttcaagaaga cgcgcgtgcg tgctggcaca gagcccggcg      1740
     aggtcataca ttcggatgtg tgcgggccga tgtcagtgga atcgatcgga ggatctcgat      1800
     tcatggtcgt gttcaaggac gatgcgacga attttcggta cgtgtatttt ctcaaacaca      1860
     agaacgaagt cctagagaag ttcaaggaac tcgatcggct cataaagaac aggtttggaa      1920
     gaaacatacg tgtgttacga tcggacaacg gtcttgagta caagaatcga gcattcgatg      1980
     agtacacgga caagagaggt atcgagcgag agtatacggc cccgtatacg cccgaacaga      2040
     acgggaaagc tgaacgggac aatcgcacgc tagttgagag cgcgcgtacg atgctgttgg      2100
     cgaagggact tccgaagaac ttgtgggcag aggcttgcaa tacagcggtg tatttagcca      2160
     accgagccgg tgcatcgagc atgagagtgg gtgcaacccc gtacgagctg tggatgggcg      2220
     tgaagccgaa tctgcatcac ttgaagatat ttggttcaga ggcatacgtg aatgtgccgc      2280
     aaataaagag gaccaaatta gacgcacgag cgaagaagat gatcttcgtg ggatacgata      2340
     gcacttcgtc aaactaccgt atatttgacc cggtgtcgaa gagagtgtcg gtgtcacgcg      2400
     atgtgacgtt ccgggagacg accggaagtg tgaagctgtc aaaaccaaaa gatgcacgag      2460
     aagtgatctt gccgaaggtc gagcgagaag ctctagttcc ggcggaaggc gacagcttcg      2520
     acgaggaaga agaggacgac aaagtctttg agaatgctgt ggacgacgag cagcgcgatg      2580
     aaggtcgaca acaggtcaat gagccagtgc gaaagctccg agacaggagt ttgatcaaga      2640
     agccgtcgag gtatgatgcc gaagcagcgg aatgcgatat tccgatcacg taccgtgagg      2700
     ctgtcgagtc caaggatgca ggaaaatggc gagaagccat agactccgag ctagagtcgc      2760
     atgagaagaa cggtacgtgg catttagtca agagggatcc gaagatgaaa cctatcgatt      2820
     cgaagtgggt cttcaagaag ctcaagaacg agaaaggaga gattcgtcgg tttaaggcac      2880
     ggctgtgcgc caggggcttc atgcaggaga agaacatcga ttacacggag acgttctcac      2940
     cggttgtgag atacgattcg ttgcgagtgc ttctcgtggc gtcgaagaat ctcgagattg      3000
     cacaattcga cgtgcaaacg gcgttcttgt acggaactct ggacgaggaa atctacatgg      3060
     agacacccga gggactcaac atggatgaag aaactcgaga agagcaagtg tgtcgacttg      3120
     taaagtcact gtactcaagc agtcaccgag atgctggaac caaaagttca gttcgtttct      3180
     gcgagagttc cggttccaag aaacatccgc ggataagtgt atattcgtgg gagaggtaaa      3240
     tggcgagacg gtttatctcg ctctcttcgt cgatgacggg ctagtcatcg gaagaacgaa      3300
     aggagtcatc gaagtcgtgt ttcggtactt gaaacgagca ttcaagatca tggtcggaga      3360
     tggaagtcta tttgtcggga caaaaataga gagagatcga aacaagaggt ccatcttcgt      3420
     gcaccagact ctgtatgcga agaagatttt cgagagattc gggatgtccg aggcaaagtc      3480
     ggtgagtgta ccgagcgacc cgaatacaac gttgctgtcg gtgtcggaga acgacgaggg      3540
     gatcgagaag gttccatact gagaagctgt tggatcgctg atgttcttgt cgattgtgtc      3600
     gaggccagat ctggcatttg ctgtaaactc ggtgagcaaa ttcctaaata aacacaatcg      3660
     ggaacattga caagctgtaa aacgcatcct atcgtacgtc gcagggacga tggactacgg      3720
     aatcgagtac cgaggaagcg aaaacgacga aataaccctg gagggttatt cggactccga      3780
     ctacgcacgc aacgtagaaa ccaggaggtc aacgaccggc tatgtgttcc aagtggcagg      3840
     tgggcctgtc acatgggcga gtcaacgtca aaagctcgtg acgttgagta ccacggaggc      3900
     agagtacgtg gcggcgtcca ttaccgcacg tgaagctgtg tggctgagaa agctacttga      3960
     agaagtcaac tgtctcagcc agggggcaac gacagtctac gtggacaatc aaagttcgat      4020
     tcgtctggtg aggaacccag agtttcataa gagaacgaag catatcgacg tccgatacca      4080
     ctttgtccga gagcgagttc agaagaaaga actcgaggtc aactatatcg agtcggcaaa      4140
     gcagaaagcc gatatcttca cgaaggcgtt cccaaagaat cgtttctgtg agctgagaga      4200
     agaaatcggt gtacgagagc gaccacgcac gaacggcgga agtat                      4245
//
ID   Copia-1_SI-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   AEAQ01003789;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_SI_;
KW   Copia-1_SI-I; Copia-1_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-359
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01003789; Positions    1702    1344.
XX
SQ   Sequence 359 BP; 96 A; 87 C; 81 G; 95 T; 0 other;
     tggagtagtt cgttgcgggt cggatgagag gcgcgatcgc ccaatcagag acgggcgaac        60
     gctcggcgaa taggagtccg agactagcga gagcggctcg aaagtacgcg tgtccggctt       120
     ccggacttac ttcgtgttcg gcagtccatg agagagcacg cgatcatctt acaactcacg       180
     aaactgaaca aacagttttt tttgtctgta caagaaacga gtttccgaaa taataaagtt       240
     cacttttcca ttaccatttt tgttaaaaat tgaaacacgc gagtgaacat ttcattttca       300
     acctgctcga taattctctt cagagactct tccttcacat ccatcaatcg ttgccctca        359
//
ID   Copia-1_SiOr-I repbase;    DNA;    INV; 4022 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4022
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 323-323 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4012
FT                 /product="Copia-1_SiOr-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MENQGQIVTTLKLNGENWVPWKFQTAVILKGKGLYDI
FT                 VTGEKVKPETESEKWVKDDARAQEIIVTRIEQGPLTHLLTCETSKEMWTKL
FT                 RSVYDKESVVSIHLMQQKFFMLNCSPDDTISTFISKLEDIRNKLKQAGENL
FT                 SEKMMITKILMSLPERYRHFCSAWESVPTEKQSLDELTSRLLIEEERWKTT
FT                 EPTTALASLQIKCREPTRKGGATKQFQGVCYVCHKPGHIARNCTKRKERDQ
FT                 EIKKCTYCKKVGHLQSECWHRKNRERQDKKQEEKVETNAFIGTPKMLNDYD
FT                 WCMDTGATEHMCRNKDMFEDMKMTEVNRKVKLGDGNLLEVKGIGTVRVYAD
FT                 NGDEIIPTVLSNVLYVPNLKVNLFSVGCVLDKGFTMVSNSDRCELKDKNGK
FT                 VRAIAERSSKLYKMKFSRVSYGCVAESSNEKKQDIVTWHNRLAHQDINHIR
FT                 DVLRRSNIKYKDNEAEFVCERCLEGKQHKFPYQGSDSRASKVLELVHADVC
FT                 GPMETESLGGARYFLLLKDDYSSYRHVYFMKNKSEVRKNIEKFILKAENET
FT                 DNKLKVLRTDNGLEFTNREVQEMLDKRGIKHQRSVVYTPQQNGRAERDMRT
FT                 LVEAARSMLNGMNKKFWAEAVNNAVYTINRTGKSHVSNKSPYEVWYQKDVS
FT                 LNQFKVFGSRVSVHVPKEQRLKWDSKNKIGILMGYSDTTKGYRIYFEDSNK
FT                 VEIYRDVVFLPEKTDQKQIEVTEQVNSSFQSENEEDTEEPESEKEQEERHD
FT                 RYNLRQNRQRPSRLDDYDVQWEASFLSVYEEDEPTTYEMAVTSNEKDKWKE
FT                 AIQEEIKALEDNETWTCNEKPYENRVVECKWVFKRKRNESGSVVKHKARLV
FT                 AKGFQQTGMLFNDFYSPVAKLPSIRIFLAICNYLKIEVCQLDICSAFLNGT
FT                 ISEDVYISLPKGFKQKEGTICKLRKSLYGLKSSPKSWYNKFHNLMLSLKFK
FT                 RSENEYCFYVKISETDKLYILIYVDDVLLAGTDKSKVEKVKNALKENFKLK
FT                 DLGLVSHFLGMIIKQDIIKGETIISQTKYVENILQKYNMLECKSVTTPMDV
FT                 NFKHDILKRDFSESPEIENRCRILIGLLMYLMLCTRPDLCITVSILSRYQS
FT                 CASIDLWQSLKRILRYLKGTKNLCLNFKVPNEDINMLTGYVDSDWAGDRVD
FT                 RKSTSGYVFKLLNCSVSWCSRKQCTVALSTTEAEYIALSLGVSEACWIRYF
FT                 VHDFKLDNDFICVKIFADNQSAIKVSKNPEFHKRLKHVDIKFHFVRDKINN
FT                 GVVTVNYLSTDNQIADMFTKPLSLYMFNKFRNQLGLEIYH"
XX
SQ   Sequence 4022 BP; 1612 A; 534 C; 822 G; 1054 T; 0 other;
     ggttattggc ccagtcaagc cagtgaaagt acaataaaag agtaataagt gtgaaaaaga        60
     aaacagggtt agaaaagtca acgcggtgtt caagttcaaa aaaataaaaa tggagaatca       120
     aggacagatt gtaacaacat taaagttaaa tggagaaaat tgggtcccat ggaagttcca       180
     gacggcagtt atcctaaaag gaaaaggtct ctatgacata gttacaggag aaaaagtaaa       240
     gccagaaacg gaaagcgaaa aatgggttaa agacgatgca agagctcaag aaattattgt       300
     tacacgaata gaacaaggtc cattgactca tttattgact tgtgaaacat cgaaagaaat       360
     gtggacaaaa ctcagatcag tttacgataa ggaatcagtc gtaagtatcc acttgatgca       420
     acaaaagttt tttatgctaa attgtagtcc agacgataca atatcgacat ttatatctaa       480
     acttgaagat ataagaaata agttaaaaca agctggagaa aacttatcag aaaaaatgat       540
     gattacaaaa attctaatgt cattacctga aagatatagg catttctgct cagcttggga       600
     gtcagttccc actgagaagc agtcacttga tgaactaacc tcaagattat taattgaaga       660
     ggagagatgg aagacaacag agccaacaac cgctttagca agtcttcaga taaaatgcag       720
     agagcccaca cggaaagggg gtgcaacaaa acagtttcaa ggagtgtgtt atgtatgtca       780
     caaaccaggg catatagcaa gaaactgtac gaaaagaaaa gagagagatc aagaaataaa       840
     gaaatgcaca tactgcaaaa aggtaggcca tctacagtct gaatgttggc acagaaaaaa       900
     tagagagaga caagacaaaa agcaagagga aaaggtcgaa acaaatgcgt tcataggaac       960
     accgaagatg ttaaatgatt atgattggtg catggataca ggagcaacag aacacatgtg      1020
     tagaaacaaa gacatgtttg aagacatgaa aatgactgaa gtaaatagaa aagttaagtt      1080
     aggtgatgga aatcttttag aagtcaaagg tatagggaca gttagagtat atgcagataa      1140
     tggagacgag attataccaa cagtattgtc aaacgtgctg tacgttccca atctaaaggt      1200
     gaatttattt tcagttggtt gtgttttaga taaagggttc actatggtat caaatagcga      1260
     cagatgtgaa ctaaaagata aaaatggaaa agtaagagcg atagctgaaa gatcaagtaa      1320
     gctatataag atgaagtttt caagagtaag ctatggatgt gtagcagaaa gctctaatga      1380
     gaaaaagcaa gacattgtaa cttggcataa caggttggca catcaagaca taaatcatat      1440
     aagagacgtt ctaagaagaa gtaacattaa atataaagat aatgaagcag agtttgtatg      1500
     tgagcgatgt ctagaaggaa agcagcataa gtttccatac caaggaagtg attcacgagc      1560
     gtcaaaggtc ctagaacttg tacacgctga tgtttgtggc cccatggaga cagaatcact      1620
     tggtggtgct cgctacttcc tactactaaa agatgactac tcttcttacc gccatgtata      1680
     cttcatgaag aacaagtctg aagtaagaaa aaacattgaa aagtttatat taaaagctga      1740
     aaacgaaacg gataacaaac tgaaggtcct cagaaccgac aatggtcttg aattcacaaa      1800
     cagagaagtc caagaaatgt tagataaaag aggcattaaa catcaaaggt cagtggtata      1860
     tactcctcaa cagaatggca gagctgagcg agatatgaga actcttgtag aagcagctag      1920
     aagtatgtta aatggaatga acaagaaatt ttgggcagaa gctgtgaaca atgctgttta      1980
     caccataaac agaaccggaa aaagtcatgt gagtaacaag tcaccttatg aagtttggta      2040
     tcaaaaagat gtcagtctaa accagttcaa ggtttttggt tcaagagtgt cagtacatgt      2100
     tccaaaagaa cagcgattga aatgggattc aaagaacaag attggaattc taatgggtta      2160
     cagtgacact acaaaaggct atagaattta ctttgaagat tcaaataaag tagaaatata      2220
     tcgtgatgtt gtatttttac cagagaaaac agaccaaaaa caaatagaag ttacagaaca      2280
     agttaacagt agttttcaaa gcgaaaatga agaagataca gaagaaccag aaagtgaaaa      2340
     agagcaagaa gaaagacatg acaggtacaa cctacgccaa aacagacaaa gaccatccag      2400
     gcttgatgat tatgatgttc aatgggaagc cagtttccta agtgtatatg aagaggatga      2460
     accaactaca tatgagatgg cagtcacatc aaatgaaaag gacaaatgga aagaagcaat      2520
     ccaagaagaa attaaagcac tggaagacaa cgaaacatgg acatgcaatg agaaacctta      2580
     tgaaaacaga gttgttgagt gtaagtgggt gttcaaaaga aaaagaaatg aaagtggtag      2640
     tgtagtgaaa cacaaagctc gtctagtagc taaaggcttt caacagactg gtatgttatt      2700
     taatgacttt tatagtccag tagctaagtt gccatccata agaattttct tagcaatttg      2760
     taattatctt aaaattgaag tatgtcagtt agacatatgt agtgcgtttt taaatggtac      2820
     tatttctgaa gatgtttata tatcattacc aaaaggtttt aaacaaaaag aaggcacaat      2880
     ttgcaaacta agaaaatcct tatacggctt aaaaagttca ccaaaaagct ggtataataa      2940
     atttcataat ttaatgttat ccttaaagtt taaaagatct gaaaatgaat attgttttta      3000
     tgtaaaaatt tcagaaactg acaaattgta cattttaata tatgtggatg atgtattact      3060
     agcaggaaca gataagagta aagttgaaaa agttaagaat gctttaaaag aaaattttaa      3120
     attaaaagat ttaggtttag taagtcactt tttaggcatg ataattaaac aagatataat      3180
     taaaggtgaa acaataataa gtcaaacaaa atatgtagaa aatatattgc aaaaatataa      3240
     catgttagaa tgtaaatcag taacaacacc aatggatgta aatttcaagc atgatatttt      3300
     aaaaagagat ttttcagaga gtcctgaaat cgagaataga tgcagaatac tgataggttt      3360
     gcttatgtac ttaatgctat gtactagacc agatttatgt ataacagtta gcattttaag      3420
     tagatatcag tcttgtgctt ctatagatct atggcagtca ttaaagagaa tattaagata      3480
     tttaaaaggt accaaaaatt tatgtttaaa ctttaaagtt ccaaatgaag atataaacat      3540
     gttaacggga tatgttgatt ctgattgggc aggtgacaga gttgacagaa aatctacatc      3600
     tgggtatgta tttaaattgt tgaattgttc agtatcttgg tgctcacgaa aacaatgtac      3660
     agtagccctg tcaactaccg aagcagaata cattgctctg agtttaggtg taagtgaagc      3720
     atgttggatt agatattttg tacatgattt caaattagat aacgatttta tttgtgtaaa      3780
     aatctttgca gataatcagt ccgctataaa agtttctaaa aatcccgagt ttcataagag      3840
     actaaaacat gtagatataa agtttcattt tgtaagagat aaaattaata atggtgtagt      3900
     aacagttaat tatttaagta ctgataacca gatagcagat atgtttacaa aaccattaag      3960
     tttatatatg tttaataagt ttagaaacca attaggccta gagatttacc attgaggggg      4020
     tg                                                                     4022
//
ID   Copia-1_SiOr-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-253
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 324-324 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 253 BP; 80 A; 30 C; 41 G; 102 T; 0 other;
     tgtagaatat acaatgttaa atctacatat tgttactaca agtaatactg tatctataag        60
     gtttgatagt cgtagtttag atagttacgg tgtctacttg tgttaatagt cgagagtgtc       120
     gagaataaga gttgacagtt aagtttgtaa agaaaaccct ttttgtttct tttataagtt       180
     ctgtatttaa agtattgttt attaacaata aacttttacc ttttattgtt actttgattc       240
     acgtccaaca aca                                                          253
//
ID   Copia-1_SpEx-I repbase;    DNA;    INV; 4137 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4137
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4195-4195 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..3911
FT                 /product="Copia-1_SpEx-I_1p"
FT                 /translation="MGSNNMNNMTLIERLTGRDNFASWKFAVKTYLEHEDL
FT                 WECVSGTGEVDLKKDVKAKSKIILLVDPINYVHVQEANSAKEVWEKLCKAF
FT                 DDSGLTRRVGLLRDLITTTLENCQSIEEYVNKIMTTAHKLRNIGFKVDDEW
FT                 LGTLLLAGLPDEYKPMIMAIESSGVAITADSIKSKLLQEVKNRDPGVFFVN
FT                 KSKNNKQPIKQKSKGPRCYTCNKYGHIGKNCKVKNNKKQSDNSFVAVFSAT
FT                 SSYDFGWYVDSGAAMHMTMNRAWIYDEKPPPIKTIRVANNKELRVESCGKV
FT                 NIHVKSTNGSTNRIQVTNVLYVPELSTNLLSVSNIVNNKCNVKFDCKGCYL
FT                 YNKDNVEVAMATLVNNMYKLNVVSVQAFLSTTNDDFYLWHQRLAHLNYNDM
FT                 KKLKDHTEGVKIPQTSELTCIPCIKGKQARSPFPSEGSRASQLLEIIHSDI
FT                 CGPMEVNSLGNARYFLTFTDDFSRKVCVFTIKSKSECLDKFKEYKSYVENR
FT                 LNTKIKTLRTDNGTEYTSKNFTDYLKLHGIKHQTSIPYTPQQNGLSERMNR
FT                 TLLEKARCMLINANLQKNLWAEAVRTAAYIINRSPTRALNYKTPEEVWSGC
FT                 KPDLSHMRIFGCQAMVQIPQEKLKKWDAKSSKMIFVGYCEDSKGYRLLDPK
FT                 TKIVTKSRDVVFLENSIKPDTVPVTLSDAERQEHVSSKRLSESSDCSTDLS
FT                 THTAVEMSENDDDEEYVPEQSIEVQQPSTMTLRPRNRPIPTMEPKSYICMA
FT                 DVPQTYEEALSSEDSEMWIKSIKEELQAHEDNGTWEIVKKPDNARLLDCKW
FT                 VFRVKSEPTGPRYKARLCAKGFAQKSGIDYTETFSPTVRYDSIRLLLSIAA
FT                 EKCMTLKQFDIKTAFLYGELQEKIYMKIPEGLNVENGMACKLIKSLYGLKQ
FT                 APRCWNAKFNSVLIKYGFVNCHADKCVYVSSNREALVYLLLYVDDGLLCST
FT                 NPTIITEVLNDLQKEFNVKICEALNFIGIQIEQCKDYIFIHQRKYIEKMLS
FT                 KFNLDNANPNSIPADPHVTLQKSTVLEDKKYFPYREAVGSLMFAAIVTRPD
FT                 IMYAVSTVSRYLNSHDQSHWNAVKRILKYLKGTLCFGLCYRSNESNTLVSY
FT                 SDADYANDPVTRRSTTGYVFMKNGAAVTWNSHLQTTVALSTTEAEFMASCC
FT                 ATKEALWVRQLLLDIGHYNQDCITLNIDNQSAICVIKNSEYHKRCKHIDVK
FT                 YNFVKEKYTEKIIDLKYISTDKQLADIFTKPLSKVKFEYFRNKLGLIENPK
FT                 ECKT"
XX
SQ   Sequence 4137 BP; 1437 A; 695 C; 859 G; 1146 T; 0 other;
     ggttatgggc ccaggatgct gaaacattga aagataaatt aaattccgtg aatagttttg        60
     agattgcata taactcactt tgcaaaccgg cctgacatcg atttttctag aaaattatgg       120
     gttcgaacaa catgaacaat atgaccctga tagaaagatt gaccggcaga gataattttg       180
     caagctggaa gttcgcagtc aagacgtatt tggagcatga ggatctgtgg gaatgcgtat       240
     caggcaccgg tgaggtcgat ctaaagaaag acgtcaaggc gaagtcaaaa ataatacttc       300
     tagttgatcc catcaactat gtccacgttc aggaagccaa cagtgctaaa gaagtatggg       360
     aaaagctctg taaagctttt gatgactcgg ggctgacacg tcgagttgga ttgctacgag       420
     acctcataac gacaacacta gaaaattgtc aaagtattga agaatacgtg aacaagatca       480
     tgactacggc acacaagctt cggaacatcg ggttcaaggt cgacgacgag tggctaggca       540
     cgttgttact tgcgggactc cctgatgaat acaagccaat gattatggca atagaaagct       600
     ccggtgtggc cataacagca gactcaatta aaagtaaact gttacaggaa gtgaaaaatc       660
     gtgatccagg tgtattcttt gtaaacaaga gcaagaataa taagcaacct atcaaacaaa       720
     agtcaaaagg gccaagatgt tatacttgta acaagtacgg acacatcggc aaaaactgta       780
     aagtgaagaa taacaagaaa caaagtgata actcttttgt agccgttttc tcagcaacat       840
     ctagctatga tttcggatgg tatgtggatt caggcgcagc aatgcacatg acaatgaata       900
     gggcttggat ttatgatgaa aaaccaccac caatcaaaac tatccgagta gccaacaaca       960
     aggagctgcg agtcgagtcc tgtggtaagg tgaacattca tgttaaaagc acaaacggat      1020
     ctacaaacag aatacaggta acaaatgtcc tttatgtacc agagttatca accaatcttc      1080
     tctcagtcag taacattgtg aataataaat gtaatgtaaa gtttgactgt aaaggttgtt      1140
     atttgtataa taaagataat gttgaagttg caatggcaac acttgttaat aatatgtaca      1200
     agctgaatgt tgtctccgtg caagcatttc tgtcaacaac taatgatgac ttttatctct      1260
     ggcatcagcg actagctcat ctgaactaca atgacatgaa gaagctgaaa gaccacactg      1320
     agggtgtgaa aatacctcag accagcgagc taacctgcat accgtgcatc aaaggaaaac      1380
     aggcaaggtc accatttcca agtgaaggtt ccagggcaag tcaactgcta gaaatcattc      1440
     actcagatat atgtggacct atggaggtga actctctcgg aaatgcaagg tattttctta      1500
     catttactga tgatttttct aggaaagtgt gtgtctttac tatcaaatca aagtcagaat      1560
     gtctagataa atttaaggaa tataagtcat atgttgaaaa tagacttaat actaaaatta      1620
     agacactacg aacagataat ggaactgagt acacaagtaa gaactttact gattatttaa      1680
     agttacatgg aattaaacac caaacatcaa tcccatatac tccacaacaa aatggtctct      1740
     cagagcgcat gaacagaact ctacttgaaa aagccagatg tatgttaata aatgctaatt      1800
     tacagaaaaa tttatgggct gaagcagtta gaacagctgc atacatcatc aatcgttcac      1860
     cgacgcgagc tctgaactat aagacaccag aggaagtatg gagtggctgt aaacctgact      1920
     tgagtcacat gaggatattt ggttgccaag ctatggtgca gatacctcaa gaaaaactga      1980
     agaaatggga cgccaagtca agtaagatga tttttgtagg atattgtgaa gatagcaaag      2040
     ggtacaggct acttgatcct aaaacaaaaa tagtaactaa aagcagagat gttgtgtttc      2100
     tggaaaattc cataaaacca gatacagtac cagttacctt atctgatgct gaaagacaag      2160
     aacatgtaag cagtaagaga ctgtctgaaa gtagtgactg tagtacagat ttgtctactc      2220
     atactgctgt ggaaatgagt gaaaatgatg atgatgagga atatgtgccc gagcagtcaa      2280
     ttgaagttca gcagccctca accatgactc tccgtccacg taacagacca atcccaacca      2340
     tggaacctaa atcatatata tgtatggccg atgtaccaca gacatatgaa gaagcactct      2400
     cctctgaaga ctctgaaatg tggataaagt ctattaagga agaattgcaa gcacatgagg      2460
     acaatggtac ttgggagatt gtgaagaaac cagacaatgc gagactatta gactgtaagt      2520
     gggtgtttcg tgtgaaaagt gaaccaacag gtcctaggta caaagccaga ctgtgtgcca      2580
     aaggctttgc acagaaaagt ggcatcgatt acacagaaac attctctccg acggtcaggt      2640
     atgactccat tcgcttatta ttgtctattg cagccgagaa atgcatgact ttaaagcaat      2700
     ttgatattaa aactgctttc ctgtatggtg aattgcaaga gaaaatatac atgaaaatcc      2760
     ctgaaggatt gaatgttgaa aatggcatgg cttgcaagct tatcaaatcc ttatatggat      2820
     tgaaacaggc accacgctgt tggaatgcta aatttaattc agttttaatt aaatatggct      2880
     ttgtgaactg tcacgctgat aaatgtgtgt atgtgagttc taatagagaa gctctagtat      2940
     atcttttgct ttatgtggat gatggattgt tatgttctac aaatccaaca ataataactg      3000
     aagtcctgaa tgatcttcag aaagaattta atgttaagat ttgtgaagct ttgaatttta      3060
     ttggtataca gatagaacaa tgtaaggatt acattttcat acaccaaaga aaatatattg      3120
     agaaaatgtt atcaaaattt aacttagata atgctaaccc taatagtata ccagctgatc      3180
     cgcatgttac tttacagaaa agcacagtgc ttgaggataa aaaatatttt ccttacagag      3240
     aggcagtggg atcgcttatg tttgctgcta tagtcaccag accagacatt atgtatgcag      3300
     taagcactgt gagccggtat ctcaacagcc atgatcaaag tcactggaat gctgtcaaga      3360
     gaatcttgaa gtacttaaaa gggacactgt gttttggact ctgttacagg tcaaatgaaa      3420
     gtaacactct ggtatcctat tctgatgctg attatgccaa tgatcctgtg acaagacggt      3480
     ctaccactgg atatgttttt atgaagaacg gggcagcagt gacatggaac agtcaccttc      3540
     aaacgactgt cgcgttgtcc accactgaag cagagtttat ggcgtcatgc tgtgccacca      3600
     aagaagctct ctgggttaga cagttattgt tagatatagg tcattataat caagattgta      3660
     ttacactaaa tattgataat cagagtgcta tatgtgtgat taaaaattct gaatatcaca      3720
     aaagatgtaa acatattgat gtgaaatata attttgtaaa agaaaagtat actgaaaaga      3780
     taattgatct caagtatatt agtactgata aacagttagc tgatatcttt actaaacctt      3840
     tgtctaaagt taaatttgag tactttagaa ataagttagg tttaattgag aacccaaagg      3900
     aatgtaaaac ctaagaatgt ttgtctttta tatttcagtt catttatgtt tgcaattcag      3960
     ttgttatgct tgaagctctg ttgatttagt ttaaagtttt gtattgggtt taatacatac      4020
     tgtaatcatt tgattaatat gtacccaata taatattgtg ataagatggc agtatgcaca      4080
     aaatatgttt ctctatgtat gtaaagttag tagaacaagg ctaaaattta gagggag         4137
//
ID   Copia-1_SpEx-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-208
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4074-4074 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 208 BP; 58 A; 42 C; 26 G; 82 T; 0 other;
     tgttacatgt tttaaatttg tcgccttttt cgactactat agtgtagcat agataatatg        60
     aaatggtcta tgaccaccgt tctatactct gtgccttttg cgcttgtcat ctttctcttt       120
     gcaatacgca tccatacaaa catgttgtaa attctcaagc tactaaataa aactatttat       180
     atctttcaaa tcgtcgttta attcatca                                          208
//
ID   Copia-1_SpFr-I repbase;    DNA;    INV; 4175 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4175
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1835-1835 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..3966
FT                 /product="Copia-1_SpFr-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MSSTNTMALIEKLTGRENYPTWRFAVQTYLEHEDLWQ
FT                 CVTAEERVDPKLDTKAKSKIILLVHPINYVHIQEAKSAKEVWNNLSRAFDD
FT                 KGLTRKVGLLRDLITTTLESCQSIEDYVNKIISTAHKLRNIEFDVNDEWLG
FT                 TLLLAGLPEVYQPMIMALESSGVAITADSVKTKLLQDVRSSESSALYVNKY
FT                 KGKQLQVAKQATEKTSKSKGPRCFVCNKYGHVSKHCWHKKKQSDQSGNYVA
FT                 VLSATENNENGWFIDSGASMHMTMHSDWLYDIIPPPINTIKVADDKKLLVK
FT                 SCGKVNLNVIGSNGKMNTIQVKDVLYIPGLATNLLSVSQIIKNGCKVQFDE
FT                 KGCKISNRNNEQVATAKMSNNMYKLNTHSMPAYTSVTKENDWYLWHQRMAH
FT                 LNFEDLNKLTESSGFKLENKEKVICISCLQGKQSRIPFPTEGSRAQNALEL
FT                 IHSDVCGPMEVSSLGGARYFVTFIDDFTRKVFIYILTKKSEVFEKFKEFKA
FT                 LVENKLGFNIKTLRTDNGNEYLSNDFQHFLKRSGISHQTSAPYTPQQNGLA
FT                 ERMNRTLLERARCMLLNAKLQKQYWAEAVTTAAYITNRCPTRVLDYLTPEE
FT                 KWSGKRPDISHLKVFGCEAMVHIPKEKAKKWDPKAIKMIFVGYSNETKGYR
FT                 FFDPKTRKALISRDAIFIESSVKRDYAAMPLSESVSESKIENESPTNNDTT
FT                 SESTEDSYQSDDGSVYEPDETLEEMESERNITTRSRMRTAKMQGNTYMCAD
FT                 EIIDQYDVPETYAAAISSDNVHAEKWKQSINEELSAHQKNNTWSLMEKPKG
FT                 VRLIDCKWVFRIKDNGSVFKSRLCAKGCGQIKGIDYTEVYSPTVRYDSIRI
FT                 LLSEAVQHEYAMMQFDIKTAFLYGDVKEDIYMRVPEGLNVPPNQVCKLNRS
FT                 LYGLKQAPRCWNQKFDNLLKKFGFKNSHADRCVYLGNVDNNNIYLLLYVDD
FT                 GLLMSKSNKALQKVICELKDNFEITQSDPKNFVGMQLERFEKCIYIHQTKY
FT                 IERLLCKFDMNNANSNNIPVDPHTTLEKGTETPDKNIQYREAVGSLMHLAV
FT                 VSRPDIMYAVSLVSRYLNSYNQTHWNVVKKIFRYLKGTKDYGLCYSPSRSC
FT                 LEGYSDADYAKDTCTRRSLTGYVFIKNSAAVTWATQCQHSVALSTTEAEFM
FT                 AACSATKEAIWLKRLLIDINAFNQNSICLNIDNQSAICLIKNVDYHKRCKH
FT                 IDIRYNFIKEKYLEKEIDLKYVNTKEQYADIFTKALPKEKFQYLRDKIGVK
FT                 QLSFL"
XX
SQ   Sequence 4175 BP; 1567 A; 644 C; 802 G; 1162 T; 0 other;
     ggttatgggc ccaggccacc tgatcgcttt ctcaaaattg tttaatagta taaaacaata        60
     taaaagaata taaaagtttc attgaatccg taataaatgt agttccgaat aatcataacc       120
     ttaaagtcaa cactcatttg tttttcttcc gaactcttca tcagcaaaat gtcttctaca       180
     aacacgatgg cactgattga aaaactgact ggaagagaga actatccaac gtggagattc       240
     gccgttcaaa cgtatcttga gcacgaggat ttgtggcaat gcgtcacagc ggaagaaaga       300
     gttgacccca aacttgacac aaaagctaag tcaaaaataa ttttattggt acatcctatc       360
     aactatgtac atatacaaga agcgaaatct gctaaggagg tgtggaataa cctctctaga       420
     gcttttgatg ataaagggtt gacacgaaag gttggcttat tgagagatct gataaccaca       480
     acattagaat cttgtcagag catagaagac tatgtaaaca agattatatc aacagcacac       540
     aagttaagaa atattgagtt cgatgtaaat gatgaatggc ttggtacgct attgctagct       600
     ggcttacctg aagtctacca gccaatgatt atggcactcg aaagctctgg tgtggcaata       660
     actgctgatt ctgtgaagac taagctatta caagatgtaa gaagctctga aagtagtgca       720
     ttatatgtga ataaatacaa agggaaacag ttacaggttg ccaaacaagc tacagagaaa       780
     acatctaaaa gtaaaggtcc aagatgtttt gtgtgcaata aatatggaca tgtaagtaaa       840
     cactgttggc ataagaagaa acagtcggat caaagtggaa actatgtggc agtactatct       900
     gctactgaaa acaatgaaaa tggatggttt atagactctg gtgcgtcaat gcatatgacg       960
     atgcacagtg actggctata tgatataata ccaccaccga ttaatacaat aaaagtggca      1020
     gatgacaaga aactcttagt gaaatcttgt ggcaaagtaa atttaaatgt gattggcagt      1080
     aatggcaaaa tgaatacaat tcaagtaaag gatgttcttt atattcctgg tttggccacc      1140
     aatcttttat ctgtcagtca aattattaaa aatggatgta aagtacaatt tgatgagaaa      1200
     ggttgtaaaa tatcaaacag aaataatgaa caagttgcca ctgcaaagat gagtaataat      1260
     atgtacaaac taaatactca tagtatgcct gcctacacat ctgtaacaaa agaaaatgac      1320
     tggtatttat ggcatcagag aatggcccat ttaaactttg aagacttgaa taaattaaca      1380
     gaaagctctg gatttaagct agaaaataaa gaaaaagtaa tatgtatttc ttgtcttcaa      1440
     ggaaaacaat caagaatacc tttccctact gagggatcac gagctcaaaa tgcactggaa      1500
     ctcatccact cggatgtttg tggacccatg gaggtatcat cccttggagg tgctcgttac      1560
     tttgtaactt tcattgatga cttcactcga aaggtattta tatacatatt aactaagaaa      1620
     tcagaagtgt ttgaaaaatt taaggaattt aaagccttgg tggaaaataa acttggtttt      1680
     aatataaaaa cactccgtac tgataatggg aatgaatatt taagcaatga ttttcagcat      1740
     tttcttaaaa ggtctggcat ttctcatcaa acatccgccc cctacacccc tcaacaaaat      1800
     ggtttagcgg agcgaatgaa tagaacccta ttagaaagag caagatgcat gttgcttaac      1860
     gcaaaactac aaaagcaata ttgggctgaa gcagtgacaa cagcagcata tatcacaaat      1920
     agatgcccga caagggtgtt agattattta acaccagaag aaaaatggag tggtaaaagg      1980
     ccggatatta gtcatttaaa agtttttggt tgtgaagcta tggttcacat ccctaaagaa      2040
     aaagccaaga agtgggatcc aaaggcaata aagatgattt ttgtgggcta tagtaatgaa      2100
     acaaaaggct acaggttctt tgatccaaag acaagaaaag ctttaatcag cagagatgca      2160
     atttttattg aaagttctgt aaagagagat tatgcagcta tgccattatc tgagtcggtc      2220
     tccgaatcaa aaattgaaaa tgaaagcccg actaataatg acacaacatc tgaaagcact      2280
     gaagactcct accaatcaga tgatggatct gtatatgaac cagatgaaac acttgaggaa      2340
     atggaatcag aacgaaacat aacaactaga tctagaatgc ggactgccaa aatgcaaggt      2400
     aatacatata tgtgtgcaga tgaaataatt gatcaatatg atgttccaga aacctatgct      2460
     gcagcaatat ccagtgacaa tgtgcatgct gagaaatgga aacaatcaat caatgaagaa      2520
     ctaagtgcac accaaaagaa caacacctgg agtttaatgg aaaaaccaaa aggagtacga      2580
     ctaattgact gtaaatgggt cttcagaata aaagataatg ggtcagtttt taaatcaagg      2640
     ctatgtgcta aaggatgtgg acaaataaaa ggaattgatt acactgaagt ttactctcca      2700
     acagtcagat atgattcaat aagaatctta ctctcagaag ctgttcaaca tgaatatgca      2760
     atgatgcagt ttgacatcaa gactgcattt ttatatggag atgtgaaaga agacatttat      2820
     atgagagttc ctgaaggttt gaatgtccca ccaaatcagg tatgtaaact taatcgttca      2880
     ctctatggtt taaaacaagc accaagatgc tggaatcaaa aatttgacaa tctgcttaag      2940
     aaatttggat ttaagaacag tcatgcagat agatgtgttt atcttggaaa tgttgataat      3000
     aataatatct atttattact ttatgttgat gacggcctac tgatgtcaaa gtcaaacaaa      3060
     gctttacaga aagtaatatg tgaacttaaa gataattttg aaatcacaca aagtgatcca      3120
     aagaattttg taggaatgca attagaaagg tttgaaaaat gtatttatat ccatcaaaca      3180
     aaatacattg agagattatt atgtaagttc gatatgaata atgctaacag taataacatt      3240
     ccagttgacc cgcatacaac tctagaaaag ggaactgaaa caccagacaa gaacatacaa      3300
     tatagagaag ctgtcggttc actaatgcac cttgcagtgg taagcaggcc tgacatcatg      3360
     tatgcagtca gtctggtgag tcgctatttg aatagttata atcaaacaca ttggaatgtt      3420
     gtcaagaaaa tatttcgata cttaaaaggg acaaaagact atggcctatg ttactcgccc      3480
     tcaaggagct gccttgaagg ctacagcgat gcagattatg caaaagacac ttgcacacgc      3540
     aggtctttga caggatatgt attcataaag aatagtgcag ctgtaacatg ggcaacacaa      3600
     tgtcaacaca gtgtggcatt atccactact gaagcagagt tcatggctgc atgttcagca      3660
     accaaagaag ccatatggtt aaaaagatta ttaatagata taaatgcatt taaccagaac      3720
     tctatttgtt taaacattga taatcaaagt gcaatttgtt taattaagaa tgtagattat      3780
     cacaaaagat gcaagcatat tgatattaga tataatttta tcaaagaaaa atatttagag      3840
     aaagaaatag atcttaaata tgtaaatacc aaagaacaat atgctgacat ctttactaag      3900
     gcattaccca aagaaaaatt tcaatatctt agagataaaa ttggtgttaa acaattgtca      3960
     tttttataaa attatatgaa ctaaatgtaa caactcaagt tgtaagtgta gttaccaaga      4020
     gtttattaat gtaagtgtgt aatgggtaaa agtaatgtaa ttttttgttt ttgtaaaact      4080
     catagagaga tgtaaagttt aatttggtga gagtgttcaa ttcttttgtt tttataagta      4140
     taacttgtag atgtaaagtt caaatttggt gagag                                 4175
//
ID   Copia-1_SpFr-LTR repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-144
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1844-1844 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 144 BP; 45 A; 18 C; 17 G; 64 T; 0 other;
     tgttgaaatg ttaaaatttg actttatgat taatacaacc ttatgctgag ttatagacaa        60
     tttgacactt tgttatctgt ggtatctcgt ttcgattatt aaactacata aatttctttg       120
     atcttttatt taataaattc atca                                              144
//
ID   Copia-1_TCa-I repbase;    DNA;    INV; 4104 BP.
XX
AC   ChLG6;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_TCa_;
KW   Copia-1_TCa-LTR; Copia-1_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4104
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG6; Positions 1875805 1879908.
XX
CC   'ATATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4040
FT                 /product="Copia-1_TCa-I_1p"
FT                 /translation="MENTTIEKLGITQFNGKDYDHWKFRMEIILDHHDVKR
FT                 CIEEENATPDDAFLKMDKKCKSLIIQCIANSHLQYVKDKTTAYQMWISLEA
FT                 GFQRKGITSQLFLRKKLLTMKLSSNDTMEKHFLKFEETIRELKSVGAKLEE
FT                 MDVVCHLLLTLPKSFDPLVTALETMEPSKLTLDFVKGKLLDCELKRKNQCS
FT                 EIEVPSSSAFNSRKFNKQQSVWNKKVFPFTCHNCGKKGHKRADCHLLKQAN
FT                 QTSSEHVAFVSYSGNAQDETVCKKMKWYVDSGATDHMVNSKEHLTNVRKLE
FT                 SPVKICVAKDNVKLLATEIGDVNAVLRVNNTVTRATIKNVLYVKNLKHNLL
FT                 SVQKIELASLNVSFEHGKVVIKRNSKVLAEGKRIDNLYEICFEVENKCKVV
FT                 CSNVCEVSASLKLWHRRLGHLSNKNLVTLSKNNMVSGLNIRNSNCNESQIC
FT                 EVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPITPETHDGKRYFLTFL
FT                 DDYTHFCVVYLLKSKSEVFEYFKCFESMVSAMFGTKIATLKCDNGREYLPN
FT                 DLVSFCKGKGIIIKTTIPYTPEQNGKAERLNRTLLEKARAMILESELSKDL
FT                 WGEAILCAAYVTNRCPTSCLENVTPSEMFYGRKPNLNNLRVFGSVAYSHIP
FT                 KQKMKGKFDRKCDVCIMIGYTHNGYRLWIPETRKVICARNVIFDENKTITS
FT                 VNSKNERHVSETDKEIMTYTELQNESEGNVEENKAIAEDEEHKINEDEESD
FT                 EDKEPDETQTEGLRKSNRKKKRPAHFSDYELEHFALSVESFIDEVPESYEE
FT                 ARSRTDYHDWEKAIAEELNALNRNGTWTLVEKPKNAKLIGNKWVFRLKRNQ
FT                 NGDIVRHKARLVAKGFMQREGFDYEETYAPVAKLTTVRTLISIINHKNLHA
FT                 QQMDVKSAFLHGKVKEDIFMSVPEGLEAEDNVVCKLNKALYGLKQASFCWN
FT                 NRFNDFAEENNLIRSKNDLCLYCKKTDETELYLLIYVDDIIIASNNLEEIR
FT                 NLKEKLINVFEMQDLGSLHYFLGIKIRSEKEGMYLSQKNYLQGLLKRFGME
FT                 NCKGTGTPMKKGSLLTKDKIDEENLKNKPIRELVGCLMYVMLASRPDLSVS
FT                 VNMCSRYQSTPTEELWQALKRILRYIKGTIDYELFYPKQECEQLVGYADAD
FT                 WAGGIDDRKSTTGFLFKVCGATVSWCTRKQSVVAISSTEAEYIALAEAARE
FT                 GLWLLHLIKDFGFDDTAFKIFEDNQSCIRLADHSEHKRLKHIDVKYNFIRE
FT                 LVQNKTIKIEYVCTTEQIADILTKSLDKSQFNKLSLKLGLTNVNVN"
XX
SQ   Sequence 4104 BP; 1491 A; 588 C; 876 G; 1149 T; 0 other;
     ggttatgggc ccaggttatg ctggaatgtg tatataaagg aatttggtcg tattgttcgg        60
     tttgttaaaa agtgttacta aaaacgttcg gtgcacgtgt aacgacaaac ggaagaacaa       120
     tggaaaatac aacaatcgaa aagttaggaa tcacccagtt caatggaaag gattacgatc       180
     actggaaatt caggatggaa attattcttg atcatcatga tgtgaaacgg tgtattgaag       240
     aagaaaacgc aactcctgat gacgccttcc taaagatgga caagaagtgt aaatcgttaa       300
     taatccaatg tattgcaaat tcgcatctgc agtatgtaaa agataagaca acggcctacc       360
     aaatgtggat aagtctggag gctgggtttc aacgaaaggg catcacgagc caactatttc       420
     tacgaaagaa gttgctgaca atgaaattat cgtcaaatga caccatggag aagcatttct       480
     taaaattcga agaaacgatt agggaactca agtcggttgg tgcaaaattg gaagaaatgg       540
     atgtggtgtg tcatctatta ctgaccttac ccaagagttt tgaccctctt gtaacagcgc       600
     tggaaacaat ggagccttct aaattgacac tagactttgt caaaggaaaa ttgctggatt       660
     gtgagttaaa acggaaaaat cagtgtagtg aaattgaagt gccaagttca tctgcattca       720
     acagcaggaa gttcaacaag caacagtctg tttggaacaa aaaagtgttt ccgtttacgt       780
     gtcacaattg tgggaagaaa ggccataaaa gagctgactg ccatttatta aagcaagcaa       840
     atcaaacctc gtcggaacat gtcgccttcg tttcgtattc aggaaatgca caagacgaaa       900
     ccgtgtgtaa aaaaatgaag tggtacgtgg actctggagc gactgatcac atggtaaaca       960
     gcaaggaaca tctgacgaac gtgcgtaagt tagaaagtcc agtaaaaatt tgtgtggcaa      1020
     aagacaatgt aaaacttttg gctactgaaa ttggtgatgt taatgcggtc ttacgtgtga      1080
     ataatacggt gactagggct actattaaaa atgttttgta tgttaaaaat ttaaagcaca      1140
     atttactgtc tgtccaaaag atagagttag caagtttgaa cgtgtcattt gaacatggaa      1200
     aggttgtaat taaaaggaat tcgaaagtac ttgcagaagg taaaagaata gataacttgt      1260
     acgaaatttg ttttgaggtt gaaaataaat gtaaggtggt ttgctcaaat gtatgtgaag      1320
     ttagtgcctc tttaaagtta tggcatagaa ggttaggtca tttaagtaat aaaaatctcg      1380
     taaccttaag taaaaacaac atggtttctg gcttaaatat aagaaacagt aattgtaatg      1440
     aaagtcaaat ttgtgaagtt tgtgttaaaa gtaaaattac gaaattgccc tttggtaaaa      1500
     ggtctgacaa caaaacgaca cgtgttttgg aattaattca ttcagacttg tgcggaccta      1560
     taactccaga aacacatgat ggtaaacgtt attttctaac ctttcttgat gattatactc      1620
     atttttgtgt tgtgtatcta ttaaaaagta aaagtgaagt ttttgaatat tttaaatgtt      1680
     ttgaatcaat ggtttcagcc atgttcggta caaaaatagc tactttgaaa tgtgataatg      1740
     gtagggaata tcttccgaat gatctggtaa gtttttgcaa aggaaagggt atcataatta      1800
     agaccacaat accatatacg ccagagcaaa acgggaaagc cgaaagatta aatagaacat      1860
     tgcttgaaaa agctagagct atgatactgg aatctgaact ctcgaaggac ttatggggtg      1920
     aagccatatt atgtgctgct tatgtaacaa ataggtgtcc cacatcttgt ttggaaaacg      1980
     ttactccgtc tgaaatgttc tatggaagga aaccaaattt gaataattta agagtattcg      2040
     gatccgtggc atacagtcac ataccgaaac agaaaatgaa aggcaaattt gatagaaaat      2100
     gtgatgtctg cataatgatt gggtatacac ataatggata cagattatgg ataccggaaa      2160
     ctagaaaagt tatttgtgcc aggaacgtca tttttgatga gaataaaaca attacttctg      2220
     taaacagcaa aaatgaacgc catgtttcag agacagataa agagattatg acgtacacag      2280
     aacttcaaaa cgaaagtgaa ggaaatgttg aagaaaataa agcaattgca gaagatgaag      2340
     aacacaaaat taatgaagat gaagaaagtg acgaagacaa ggaaccagac gaaactcaaa      2400
     ccgaaggact aagaaaaagt aacagaaaga aaaaacgtcc ggctcatttt tctgactacg      2460
     aactggaaca ctttgcatta agtgtagaat catttattga tgaagttcct gaaagttatg      2520
     aagaagcaag atccagaact gattatcatg attgggagaa ggctattgct gaagaattaa      2580
     atgcacttaa tcgtaacgga acatggactt tggttgagaa accaaaaaat gctaaactaa      2640
     taggaaataa atgggttttt agattaaaaa ggaatcagaa tggagatatt gttagacaca      2700
     aagctagact tgttgctaag ggctttatgc agagggaagg attcgactat gaagaaactt      2760
     atgctcctgt ggctaagctc actactgtca gaactttgat atcgataata aaccacaaaa      2820
     atctgcatgc acaacaaatg gatgtaaaat cagcattttt acacggaaaa gttaaggaag      2880
     atatcttcat gtcagttcct gaaggtctag aagcagaaga caatgttgtg tgtaaattga      2940
     acaaagcact ttatggtctt aaacaagctt cattttgttg gaataatagg tttaatgact      3000
     ttgcagaaga aaataatttg ataagatcaa agaacgatct ttgtttgtac tgcaaaaaaa      3060
     ctgatgaaac ggaattatac ttattaattt acgtcgatga tattattatt gctagtaaca      3120
     acttggaaga aattcggaac ctcaaggaga agctaataaa tgtgttcgaa atgcaagatt      3180
     tagggtcttt gcactatttt ctaggtataa aaatccgatc tgaaaaggaa ggaatgtatc      3240
     tgagtcaaaa aaattactta caaggattgc taaaacgttt tgggatggaa aactgtaaag      3300
     gtacagggac tccaatgaaa aagggatcac tattaacaaa ggacaaaatt gatgaagaaa      3360
     atttgaaaaa taaacctata cgagaattag ttgggtgtct aatgtatgtc atgttggcaa      3420
     gcagaccaga tttaagtgtc tccgttaaca tgtgtagtcg ttatcaaagt acaccgacag      3480
     aagagctgtg gcaagcccta aaacgtattt taagatacat caaaggcacg atagactatg      3540
     aactgtttta tccaaagcaa gaatgcgagc aacttgtggg ctatgctgat gcggattggg      3600
     cgggcggcat tgatgacaga aaatctacaa caggttttct attcaaagtg tgtggtgcaa      3660
     cagtgtcctg gtgtaccaga aaacagtccg ttgtagcaat ttcttctact gaagcggaat      3720
     atatagctct tgctgaggca gctcgtgaag gactttggtt gctacacctg ataaaagatt      3780
     ttggttttga tgataccgct ttcaaaattt ttgaagataa tcagtcatgt attagacttg      3840
     cagatcattc agaacacaaa agactgaaac atattgatgt taaatataac ttcatacgag      3900
     aacttgttca aaataaaact attaaaattg aatatgtatg tacaactgaa caaattgcag      3960
     atattttgac caagtctctt gataaatctc agtttaataa gttgtcattg aaactaggtt      4020
     tgacaaatgt taatgtaaat tagaattttc ttgtttcact gatattgttt tattaccgta      4080
     aagtgtgctt gaattgaagg ggag                                             4104
//
ID   Copia-1_TCa-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   ChLG6;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_TCa_;
KW   Copia-1_TCa-I; Copia-1_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG6; Positions 1875620 1875804.
XX
SQ   Sequence 185 BP; 63 A; 29 C; 31 G; 62 T; 0 other;
     tgttaagata caattcagca cgctatacaa ccaattatac ggttagagtt agtgactttt        60
     tgttaagttg gtaataatgt aagtaagaaa atggcgtgta caagaagcaa gtagttttaa       120
     gttgaataaa tccgtttttg cttaaatcac tttatatatc ttccatcgtt ccacgaaccc       180
     taaca                                                                   185
//
ID   Copia-1_TrNi-I repbase;    DNA;    INV; 4333 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4333
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 206-206 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           165..4094
FT                 /product="Copia-1_TrNi-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MEKLGVIRLEGAKNWSVWRFQMAVILREQGLYQVVTN
FT                 PNLKPSNGSAAAATKPDEVSAKPGQASAEPEQASADKDLKAMSAIVTRLAE
FT                 PVLHQVITCQTAHEVWNRLHSIYEKSGETSLMLQQQRFFALKFENDMSVAD
FT                 FISKVQEQQQILRRLGEAVTDRMAMSKIIMSLPPKYSHFVSAWESCAEEKQ
FT                 TVDNLTARLLVEEERLNNKSSSKVDESVALFSKGQKGKNKGNYKCFLCNKS
FT                 GHLKKDCKLKDVCFNCQKPGHFKDKCKATKNNKKTENAFVSKVPVSASDRL
FT                 IDEKWLVDSGASHHMTYQKELFCEYERLSTPKVVMIGDGRHLNALGIGKIK
FT                 LMAFDGEEYVSCSINNVLHVPKLKINLFSVGSVVCNGFQVSMTNDQCVFSK
FT                 DNRVCAIANKESCSKLYVMDFKSESLAANVAKLELSEWHERLVHQNYKEVK
FT                 RILKKNNIDFSESPIDTCTACVQGKQHRLPFDSSRRSTSKTGELVHADLCG
FT                 PIEEKSIGGSRYFLLLKDDFSNYRTIYFLTYKSETVEKIKEFIMRAKTLNN
FT                 PVCTLRSDNGTEFVNAEMKTLLAEHGVTHETTVPYCPEQNGKAERDMRTLV
FT                 EGARTLLHAKRMDKVFWAEAINTVVYTLNRTYHSKEEGKTPYESWSGNKFD
FT                 VNGLHTFGSEVFVHIPKEKRRKFDAKGEKGIFVGYGEYTKGFRIYFPRKNA
FT                 VEVVRDVTFVKKHDKPEKAEQEEECIYLDIEENLNNEEYQSVSNTEENEEF
FT                 EDCEESDNIMQEVEFLEEEIIEDEEIQEVNDSRRTRSRKAPNWFDDYEVGF
FT                 ISMHNEPSTLKEAMECEDKENWIEAMNREITTLKENNTWSEVAMVPKGIKV
FT                 INSKWVYRIKENPSQEIQYKARLVARGFEQTDMDGAEVYAPVASLTSFRTL
FT                 LAVAVKKKLPVYQMDVTGAFLYGDIDEPVYMKLPNGGIGKLNKSIYGLKKS
FT                 PKYWNRKFNDFMCSDGFIKSKNDPCLYFKCCKEYSIYVLIFVDDLLYFSDS
FT                 DIQIRKFKEKLCKNFAMKDLGMACNYLGISIEQDVENGKTVINQKDYLLKV
FT                 LRKYGMSDCKACNIPIDQNFKFELLRREKSESKEIELKCRQIIGNLLYASN
FT                 ATRPDLCVAIGFLSRYQHCASMLLLKCLQRVLRYVKGTVDLSLVYGCNGND
FT                 KLEGYVDADWAGDTKDRKSTSGYIFKVFDCVISWCTKKQLCVSLSSTEAEY
FT                 VALCLGIVESCLLKNLLLDFGFKLEVKINEDNQSVIKIAENNFSNKRLKHI
FT                 DVKYHFIIEKINDGCVSLSYVSSSDNLGDMFTKALGGQLYVKLRSKILK"
XX
SQ   Sequence 4333 BP; 1506 A; 530 C; 1046 G; 1251 T; 0 other;
     ggttatgggc ccaggcccgt aaacgtattt aggtgaagat tggctttgga ttaatcgtct        60
     ggaaggagct tggtcgggtg tcgacaagca agaaggaacg cggtggcggc cggcattttt       120
     ggcgtcactc ggtttgcttt gttattgcga gacgaaatat caagatggaa aagctcggcg       180
     taatacgact ggagggagca aagaactgga gcgtctggag attccagatg gcggtgattt       240
     tgagagaaca aggattatac caggttgtaa cgaatccgaa tctcaaaccc agtaatggca       300
     gtgcagcggc agcgacaaaa ccagatgaag tgtcggcgaa gcccggtcag gcgtcagcgg       360
     agcccgagca ggcgtcggca gacaaggatt tgaaggcgat gagtgcaatt gtgacaagat       420
     tggcggaacc agttctacat caagtaatta cttgtcaaac agcgcatgaa gtatggaacc       480
     ggctgcacag tatatatgaa aaaagtggag aaacgtcact gatgctgcaa cagcagcgat       540
     tctttgccct aaaatttgaa aatgacatga gtgtcgcgga ctttatttcc aaggtgcagg       600
     aacagcagca gatcttgagg cgactgggag aagcggtaac cgacaggatg gctatgtcga       660
     aaatcatcat gtcacttcca ccgaagtatt ctcactttgt tagtgcgtgg gaatcatgtg       720
     cagaagaaaa acagactgtt gataatttaa cggcacggct cttagttgaa gaggaacggc       780
     taaataataa gagtagcagt aaggtagacg aaagtgtagc attgttttct aaaggtcaaa       840
     aaggtaaaaa caaaggtaat tataaatgtt ttttatgtaa caagtcaggt catttgaaga       900
     aagattgtaa gcttaaagat gtgtgtttta actgtcaaaa gccaggtcat tttaaggaca       960
     aatgtaaagc tactaaaaat aataagaaaa ctgaaaatgc ttttgtgtct aaagtgccag      1020
     ttagcgcaag tgatcgttta atagatgaaa aatggttggt agacagcggt gccagtcacc      1080
     atatgacata tcagaaggaa ttattttgtg aatatgaaag gttatccact cctaaggttg      1140
     tgatgatagg tgatggacga cacctaaatg ctctaggtat aggcaaaata aaattaatgg      1200
     catttgatgg tgaagaatat gtcagttgct cgataaacaa tgttttgcat gttcctaaat      1260
     taaagattaa tttattttct gtaggtagtg tggtatgcaa tggttttcaa gtgagtatga      1320
     ctaatgatca gtgtgtattt tccaaggata atagagtgtg tgctattgct aataaggaat      1380
     catgttcgaa gctgtatgta atggacttta agtcagaatc tttggcggct aatgtagcta      1440
     aacttgagtt aagtgaatgg catgagaggt tagtacatca aaattataag gaagtgaaac      1500
     gaattttaaa gaaaaataat attgatttta gtgagtcacc aattgacaca tgtacagctt      1560
     gtgtacaagg caaacagcat agattaccat ttgatagtag tagaagatct acaagtaaga      1620
     caggtgagtt ggtgcatgct gatttgtgtg ggccaataga agaaaagtca ataggagggt      1680
     caaggtactt tcttttatta aaggatgatt tctcaaacta taggacaatt tatttcttaa      1740
     cttacaagtc ggaaactgtt gaaaagatta aagaatttat tatgagggca aaaacattaa      1800
     ataatccagt ttgtacactt cgcagtgata atgggacaga atttgtaaat gcagaaatga      1860
     aaaccttatt ggcagagcat ggagtgacac atgagactac agtaccttat tgtccagagc      1920
     aaaatgggaa agctgaaaga gatatgagga ctctagttga aggagcaaga actttgttgc      1980
     atgcaaaaag aatggacaaa gtattctggg ctgaagcgat taacacagtt gtgtacactc      2040
     taaatagaac ttaccatagc aaagaagaag gaaaaacacc atacgagtca tggtcaggga      2100
     ataagtttga tgtaaatggt ttacatacat ttggcagtga agtctttgtg cacataccaa      2160
     aagaaaaaag gaggaaattt gatgcaaaag gagaaaaagg tatttttgta ggttacggag      2220
     agtacacaaa agggtttagg atctattttc caaggaaaaa tgcagtggaa gtagtgagag      2280
     atgttacatt tgtgaagaaa catgataaac ctgaaaaagc agagcaggaa gaagagtgta      2340
     tatatttaga tatagaagaa aacttgaaca atgaagaata ccagtctgtg tcgaacactg      2400
     aagaaaatga agaatttgag gattgtgagg aaagtgacaa tatcatgcaa gaagtggaat      2460
     ttctagaaga ggaaattata gaggatgaag aaattcaaga agtaaatgat agtagaagaa      2520
     cacgctctag aaaagcaccc aattggtttg atgattatga ggttggtttt ataagcatgc      2580
     ataatgaacc tagtaccctt aaggaagcca tggagtgtga agacaaagaa aattggatag      2640
     aagctatgaa cagagaaatt accacattga aagaaaataa tacatggagt gaagtagcaa      2700
     tggtgccaaa gggaataaag gtaataaaca gtaaatgggt gtacaggata aaagaaaatc      2760
     caagccaaga aattcaatac aaggcccgat tagttgctag gggttttgag cagactgata      2820
     tggatggtgc agaagtttat gcccccgttg caagtttgac ttctttccgt actttgttag      2880
     ctgtagcagt aaaaaagaaa cttccagtat accagatgga tgtaacagga gcctttcttt      2940
     acggtgacat tgatgaacct gtgtacatga aactacctaa tggaggaata ggtaaattaa      3000
     ataagtctat atacggattg aagaaaagtc ctaagtactg gaatagaaag tttaatgatt      3060
     ttatgtgtag tgatggtttc ataaaatcca aaaatgatcc atgtttgtat tttaaatgtt      3120
     gtaaggagta ttccatttat gtgctaattt ttgtagatga tttgctatat tttagtgata      3180
     gtgacataca gatcagaaag ttcaaggaga aattgtgtaa gaactttgct atgaaagatt      3240
     taggtatggc ttgtaactat ttaggtatta gcattgagca ggatgtagaa aatggaaaga      3300
     ctgttataaa tcagaaggat tatttgttaa aagtattaag aaagtatggg atgtctgatt      3360
     gcaaagcttg taacatacct attgatcaga attttaagtt tgaattgtta agaagggaaa      3420
     aatctgaaag taaagaaatc gaattgaaat gtaggcagat aattggaaat ttgctgtacg      3480
     cttctaatgc tacaaggcct gatttgtgtg tagcgattgg tttcttaagt agatatcagc      3540
     actgtgctag tatgttgcta ttaaaatgtt tacagcgtgt attgagatat gtgaaaggta      3600
     cagtagattt gtcattggtg tatggttgta atggtaatga taaattggag ggttatgttg      3660
     atgctgattg ggctggtgac acaaaagaca gaaaatctac ttcaggatat atatttaaag      3720
     tatttgattg tgtaatatct tggtgtacta aaaagcaatt atgtgtatct ttgtcatcaa      3780
     ctgaggcaga atatgtagca ctgtgtttag gtatagttga gtcatgcttg ttaaaaaact      3840
     tattattaga ttttggattt aaattggaag taaagattaa tgaggataac cagagtgtaa      3900
     tcaaaatagc agaaaacaat ttcagtaata agaggcttaa gcatattgat gtaaaatatc      3960
     attttatcat agagaaaatt aatgacggtt gtgtaagtct atcctatgtt agtagttctg      4020
     ataatcttgg agatatgttt actaaagcat taggtggaca gttgtatgta aaacttagaa      4080
     gtaagatttt aaaataagtt ttccattaag ggggtgatat tttattagtg ttgcttctga      4140
     atttgtttta atttttactg attttgttaa ggggctggat gtgtattatg ttgttaaggc      4200
     aagtgtgtcc actgtgttat aaaggggtag ttatctttga tgttgttatg ctagagttgc      4260
     tagacataaa ggtaaagtta gatatattag tttaagcagg ttaatcaatc aaaaattaag      4320
     tgttgagggg gtg                                                         4333
//
ID   Copia-1_TrNi-LTR repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-198
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 204-204 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 198 BP; 53 A; 36 C; 35 G; 74 T; 0 other;
     tgttaaatat gctgtagcaa cctattatgt gaggcaacac ttatgtttga tatatagatg        60
     tttttttgtt ttgttacact ggcaactctc tctctgcaat cggtcatggt ggacgtcggg       120
     cgtttgtaaa acttcatcta aataaaaatc cattgtgtgt taactctgca tctgcatttt       180
     attccaaaag tcctaaca                                                     198
//
ID   Copia-1_TrVa-I repbase;    DNA;    INV; 4357 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-1_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4357
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 239-239 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4294
FT                 /product="Copia-1_TrVa-I_1p"
FT                 /note="DUF4219, gag, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MAENDTSLADRIFVFDGSNYHKWKLRLKALLGSKQCL
FT                 EVITQDQRPAEIDAATWLKMQAKAYNMIVSSLSNSQLDLIAPNDTSLQIIE
FT                 KLDKNYLTQSSAVKLMAKRKLLNLKLSESTNPTEFFTKFEQAVNELQQTGE
FT                 AVKEEDKINYLLLSLPDSMSHLADVVDAVSPEDKTVTYLKSKIMIAHQKKA
FT                 SNEEAIEDLNQNLQAFRINAPSTQAANNVRSFKNGRSRSYRGNYPQSRGHN
FT                 NYNTSYQCCPQDQQYSGQSLHRNHSRGYFRSHSRNGTHSRRNWRGNFKTRG
FT                 HHSKSVYNCHSDCHSNCQSNSQSNSSRSVNFCHTNCQSIDENEHSFHVNLY
FT                 NSPPEIVNNSSLNASNNNNERKNVSWLLDSGTSAHIINDENFFTDYVYLKE
FT                 PINIKVGDGFSLKSEIIGNIQAFSKVDGHLVKINLTNVYYSPKMSRNLLSV
FT                 SCLTQLGNRVTFNDNFARIFSPNNVLNTIAKRENNLYEVETLLEVRPPPVR
FT                 DVYANNVEMTNLEKWHRTLGHVNFKDLENLRNLNLLDGLPKTFEKEFLKCE
FT                 ICLENKMTNLKFKNKRSKASEILEILHTDVNGPITQTGHNGENYFVTCIDD
FT                 FSKFSGVYCVRSKAEVPEVIMDFINFAENVQNKKVKQLRCDNGREYINQRL
FT                 INFTKQKGIYLAPCPPYTHELNGTAERFNRTIMNKARCLLREAQLPVQFWP
FT                 ECVKTANYLNNRSVTNTILMKTPYEIFFQRKANVENLRLYGSVAFVRIPEQ
FT                 LRRSKFAPKAQKGILVGYTDQGYRILVNNKIVVSRHVQFIERNCNSIKAQC
FT                 KIDQDSIDKTSVEKFIAFPGENVFRDANVNPNQSVVSQNQNNSLYNTPSSS
FT                 NFSPKTPHSSKPSFIQNSQSESPPVRKLRDRSTLKPPRKLIDSFVFVNFCD
FT                 ATAPISYQEAITAENSNQWKIAMNEEINSLEANEAWNIVNRPNDKKVIDLK
FT                 WIYKVKPNNQFKARLVAKGFQQEYSENEEIYSPVIRMYTLRILLVLACVFK
FT                 WTIFQMDVKTAFLHGELNSDVYVNPPEGFTVGANKVLKLKKALYGLRESSR
FT                 KWYECFNDYLCQIGFMRSNYDYCLFFLKTGDDVVYVLLYVDDLLILSKNRD
FT                 LIHQVRTKLSNKFRMTDVGLIKNYLGLEIDYDQANGKMSISQERYIESLAQ
FT                 KFQILDAKPFNTPMETNLKLLPADFNELGDNLPFRNLIGSLLYIANGSRPD
FT                 IAFAVNYVSRFQNAYSVTHYKYALRILQYLFSTKSLKLNYSIDSSEILKAY
FT                 VDSDFASDLTDRKSTTGIVVKLFNNPVLWKVQKQKIVSRASTHAEYYALAE
FT                 CVTEVLPLQGLLSELNINATPTTICEDNSGALSLAMNGKFTKNSKHIDVSF
FT                 HFVHDYILKNQIVVEKINTVDQPADILTKSLSFPRFVKLREMLNLS"
XX
SQ   Sequence 4357 BP; 1506 A; 781 C; 774 G; 1296 T; 0 other;
     tggtagcaaa ttcgtggttc tatctcgccg gtattgttaa cctatttgtt cgcgacgttc        60
     ctatgtcatg gccgaaaacg acaccagcct cgcggatcga attttcgtat tcgacggatc       120
     caattatcac aaatggaaac taaggctcaa agcgctcttg ggatcgaagc aatgtctcga       180
     agtcatcact caagatcaac gacccgccga aatagatgca gccacttggt taaagatgca       240
     ggccaaagca tacaacatga ttgtgagttc attatcaaat tcccaactcg atttaatcgc       300
     ccccaatgat acctcgctcc aaatcatcga aaagctagac aaaaattacc ttacccaaag       360
     tagtgcagtg aaattgatgg ctaaacgcaa gctgctgaat ttgaagttgt cggaatccac       420
     aaatcccact gagtttttta caaagttcga acaagccgtc aatgaactcc agcaaacggg       480
     tgaagcagtt aaagaagagg ataaaatcaa ttacttgttg ctgagtttgc ctgactccat       540
     gtcccattta gccgatgtag tagatgcagt ttccccagaa gacaaaactg tcacttatct       600
     taagtccaag attatgattg cgcatcagaa gaaagcgagc aatgaagaag ccattgaaga       660
     tttaaatcaa aacctacaag ccttccgcat caatgcacca tccactcaag cagccaacaa       720
     tgtgaggtca ttcaaaaatg gtagaagtcg ttcttatcgt ggaaattacc cgcagtctag       780
     aggtcacaac aactataata catcttacca atgttgccct caagatcaac agtactctgg       840
     ccaatcttta cataggaatc attctagagg ctacttcaga agtcattcaa gaaacggaac       900
     acattcaagg cggaattggc gtggaaactt caaaacccgt ggacaccatt ccaagtcagt       960
     gtataattgt cattctgatt gtcattctaa ttgtcaatcc aattctcaat caaattcttc      1020
     aaggtcagta aatttttgtc atacaaattg ccaatctatt gatgaaaatg agcattcttt      1080
     tcatgtaaat ttgtataatt cccctcctga aatagtgaac aattctagtc taaacgcttc      1140
     aaacaataat aatgagcgta aaaatgtatc ctggttatta gattctggca cgagtgccca      1200
     catcattaat gatgaaaatt tctttacgga ttatgtgtac ttaaaggaac caattaatat      1260
     taaagtagga gatggtttct cattaaagtc agaaattatt ggcaatattc aagctttttc      1320
     aaaggtagat ggtcacctag tcaaaattaa cttaaccaat gtttattatt cgccaaaaat      1380
     gtctagaaat ttattaagtg tgtcttgctt aacgcagtta ggtaatagag ttactttcaa      1440
     tgataatttt gcaaggattt tcagtccaaa taacgtttta aacactatcg caaagagaga      1500
     aaataatttg tatgaagttg aaacattact ggaagtaagg cccccacctg ttagagatgt      1560
     ctatgcaaac aatgttgaga tgacgaattt ggaaaaatgg cacagaactc ttggtcatgt      1620
     gaatttcaag gacttagaaa atcttagaaa tcttaactta ctagatggtc taccaaaaac      1680
     cttcgaaaag gaatttctaa aatgtgaaat ttgcctagag aacaaaatga caaatttgaa      1740
     gttcaaaaac aaaaggtcca aagcttctga aattttagaa atacttcaca cagatgtgaa      1800
     tggtccgata acgcaaactg gtcataatgg cgaaaactac tttgttactt gcatagatga      1860
     ttttagtaaa ttttcaggcg tttactgtgt gagaagtaaa gcagaagtac ctgaagtcat      1920
     tatggatttc attaattttg ctgaaaatgt acaaaataaa aaagttaagc aacttagatg      1980
     cgacaacgga agagaatata ttaatcaaag gttaattaat tttaccaagc aaaaaggcat      2040
     ttatttagca ccctgtcctc cctatactca tgagctcaat ggcacagcag agcgtttcaa      2100
     tagaacaata atgaataaag ccagatgtct tcttcgagaa gcacaactgc ctgttcaatt      2160
     ttggcctgaa tgcgttaaaa cggcgaatta tctgaataat aggtcggtaa caaacactat      2220
     ccttatgaaa acgccatatg aaattttttt ccagagaaag gctaatgtag aaaacttaag      2280
     gctctacggc agcgtggcat ttgtcagaat accagaacaa ctcaggcgtt ctaaatttgc      2340
     gcccaaagct caaaaaggaa ttctcgtagg atatacagat caaggctatc gtattcttgt      2400
     aaataataag atagttgtta gccgtcatgt ccaatttatt gaaagaaatt gcaattccat      2460
     caaagctcag tgcaaaattg atcaagattc cattgataaa acttccgtag aaaaattcat      2520
     tgcgtttcct ggtgaaaatg tttttcgtga tgctaatgta aatccaaatc aaagtgtagt      2580
     atctcaaaat caaaataatt ctctttataa caccccaagc tcaagtaact tcagtccaaa      2640
     aactcctcat tcttccaaac ctagttttat acaaaattct caaagcgaat caccaccagt      2700
     ccgaaagctt cgagatagga gtactttgaa acctccaagg aaactaattg atagtttcgt      2760
     ttttgtcaat ttttgtgatg caactgcacc gatttcttac caggaagcaa tcacagctga      2820
     aaattccaac caatggaaaa tagctatgaa tgaagagatt aacagtttag aggcaaatga      2880
     agcgtggaat attgtcaatc gccctaatga taaaaaagtt attgatctta aatggattta      2940
     caaagttaag ccgaataacc aatttaaagc tagattagtt gctaagggat ttcagcagga      3000
     atattcggaa aacgaagaaa tatattctcc tgttattagg atgtataccc tgagaatttt      3060
     gttagtttta gcatgcgtct ttaaatggac aatcttccaa atggatgtca agacagcgtt      3120
     cctgcatggt gaattgaatt cagatgttta tgttaaccca ccagaaggtt ttacagtagg      3180
     agcaaataag gtcctaaaat tgaaaaaggc actttatggt ctaagagaaa gtagcaggaa      3240
     atggtatgaa tgttttaatg attatttatg tcaaataggc ttcatgagat caaattatga      3300
     ttattgtttg tttttcttga aaactggcga tgacgtcgtt tatgtgttat tgtatgtaga      3360
     tgatttatta attttaagta aaaatcgaga tttaattcat caagtcagaa ccaaattatc      3420
     gaataagttt aggatgactg atgtaggttt aattaaaaat tatttaggtt tagagattga      3480
     ttatgatcaa gcaaatggaa aaatgagtat tagtcaagag cgatatattg aaagtttagc      3540
     tcaaaagttt caaattcttg atgccaaacc cttcaacact cctatggaga ccaatttaaa      3600
     attactccct gcagatttta atgaattagg agacaatttg cctttccgta atttaatcgg      3660
     ctctctgcta tatattgcta acggttcaag accagatatc gcttttgcag tcaattatgt      3720
     cagcaggttt caaaatgctt actccgtaac tcattacaaa tatgcactta ggattttgca      3780
     atacttattc tcaactaaat cgctgaaact taattacagc attgattcta gcgaaatact      3840
     aaaagcatat gtcgattcag attttgcttc agatttaacg gaccgaaaat cgacaaccgg      3900
     tatagttgta aaattattta ataatccagt gttgtggaaa gttcaaaagc agaaaattgt      3960
     gtcacgcgca tccacacatg ctgaatatta tgctcttgca gaatgtgtaa cagaagtcct      4020
     cccgcttcaa ggactcctgt ctgaattgaa tattaatgct actccaacaa cgatttgtga      4080
     agataattct ggcgctttaa gcttagccat gaacggaaag ttcaccaaaa attccaaaca      4140
     tatagacgtg agttttcact ttgttcacga ctacattctt aaaaaccaaa ttgttgtcga      4200
     gaagattaat accgttgatc agccagcgga cattcttaca aaaagtttat cttttcctcg      4260
     atttgtcaaa ttaagagaaa tgttaaattt atcgtaaggc atagtttaag gaagcatata      4320
     actttttttg tttttctacg ctaaatttaa ggaagca                               4357
//
ID   Copia-1_TrVa-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-1_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-259
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 222-222 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 259 BP; 63 A; 55 C; 30 G; 111 T; 0 other;
     tgttagatta ttgagttgta atctttgact tatctgtaat ctttgttttc taacctgtca        60
     aactctcgtg gtcgttccct gtctcttatg tcgctatgaa ctgttaagcc taatctgtcg       120
     ccatcatcat ctctcgtata agtccaatcc gtataattga tctcaatctt atttttatat       180
     catatttaat aaatcatatc cttttgaatc cttcgttcgg tttttaattc aagtataatt       240
     ccaccctctc aattttaca                                                    259
//
ID   Copia-200_AA-I repbase;    DNA;    INV; 4276 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-200_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4276
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4276
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (19-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4276 BP; 1203 A; 876 C; 1225 G; 972 T; 0 other;
     ggttatggtg cccaggacac tgagtgaaat tcgatagtgc aaagcgtgcg agaaatttcc        60
     ggcatccgcc attttggctg atggccgata gcgtcggtac agaaaaaaaa gtgtttcgtt       120
     ggtgtgcggt tggcgtgatc gtttcgacac gaacgagttc tttcggttcg tcagtggtgt       180
     ggtgatgtgc gatccatccg attgcaacgt agcagtacgc ttacggttgt gtgcgtgacg       240
     aacggagtgt cgaaagtcga cagcgcagcg cgtgtggttg tgtaagaaca aaccgagtga       300
     atgttttgag aagtcgaaat ggctgagaaa ttcctgtttt cacggttaaa caaccaaaac       360
     taccaaacgt ggaaaacacg aatggagatg ctcctcaagc gggaggactt gtggtttgtg       420
     gtagtggacg cgaaacctaa cccgttgacg gatgcttgga agaaagcaga ccaaaagtgt       480
     gtggcaacaa ttgtgttgta tgttgaagac aatcaattga atctcgtgaa gaatgccacg       540
     gaagcccaag ctgtgtggaa cgcgctaaaa acctaccacg aaaaagcaac tatgacgtcg       600
     cgtgtgtcgc tcctcaagcg aatttgtagt ttgaatatga gtgagggcgg tgatctcgat       660
     caacatttgc aagagctcga aagtctcttt gaccggctaa cgtgcgcggg acaggcaatc       720
     gaagattctt tgaaaatcgc gatgattcat agaagtttgc ccgattcgta taacggttta       780
     gttacggcac tggaaagtcg tccagacgcc gacttgacga ttgatttcgt aaaacaaaag       840
     ttgttggacg aattccaacg aagaatcgaa cggtcgggtg tgcggtcggg tggctcgaac       900
     gaaaaagtga tgaaggcaaa agacaagaag aacaaagttt gctttcattg tcaaaagccg       960
     ggccatttta aggcacagtg tcggttgcta aagcaacaac aacagcagca gaacgcgaga      1020
     agtgattcga aagaagtgaa gcgtgaatcg aaagccaaac aagcggctga aaaagatccg      1080
     ccggtgtgtt tcacggtcgg cgatcatacg aaaggtggct gctggtacat tgacagtggg      1140
     tgttccaccc acatgaccag tgagaaatcg tttttcgtga aattggaccg aaatgtgaaa      1200
     acggaggttg tgttggctga cggttcagtc accaaagcgt gcggtatcgg tgaggggact      1260
     gtgcgttgcc ccgatggtga cggtaaggtg aaagacatca caataagtga agtactgtac      1320
     atccctgcgt tgaacagtgg tctaatctcg gtgcgtaaat tggcgcagaa aggattcgaa      1380
     gtgaagttta gtgcgacgga gtgccaaatc aagagcggaa gcggatcggt tgtggctacc      1440
     ggtgtaacaa gtggcaacct gtacctgttg aaaacggcag agcatgcaaa gctgggaaaa      1500
     gtgatgcagc acctgaagaa ctgccagcac acctggcaca ggcggatggg tcatcgggat      1560
     ccagccgtat tggaacgtgc caaggagctg tcggaaggag tcgacgtaca ggattgcgga      1620
     atcagacagg tttgcgaacc gtgtctacaa ggtaaattgc ctcgtaattc tttccccaaa      1680
     gcgtcatcgc atagatcgag tcgtgttcta gacctcatac acacagatgt gtgcggcccg      1740
     atggcgaatg taacacccgg aggttgtcgg tacattctga ccttgaccga cgatttcagt      1800
     cgttactgtg ttgtgttctt acttcgacaa aagtcggatg tagcggggtg tattaaacgg      1860
     tatgtagccc attgcaaaac ccgttttgga cgaccgcctt gcatcatacg gtcagatgga      1920
     ggtggggaat ttattaatcg agaattgaag gagttctacg atctcgaggg tatccagtct      1980
     caggtaaccg ccccatactc cccccagcaa aacggcgtcg ctgaacgcaa gaaccggacc      2040
     ctgcaggaga tggcgtcatg tatgctgctg gacgccgggc tagcgaagaa ttattgggga      2100
     gaggctgtta tgacggcgac ctatttacaa aaccgtttgc cgtctcgttc cgtggatcgt      2160
     acaccgtacg agaagtggtt cggtgttaaa ccgaatctca agcaccttcg tgtatttggg      2220
     tcaacagctt acgtccacgt gcccaacgtg aagcgtgtga agttcgatgc gaaaggccga      2280
     aagcttgtgt tcgtaggtta ctgtgaggat cgaaaggcct acaggttcct ggatccggag      2340
     gatgacagca ttaccatcag tcgcgatgtt tatttcatcg agcagaagaa cgggtcatcg      2400
     tccaatggac caggtggcac cagcgaatca gacgttgcgg atttggactg gcctggtttg      2460
     acaagcatgg aaggcaagct tcagatggaa ccggataaag accagtgctc tcttcaggag      2520
     gagcaagcag aatccgatga agagcttcac agctgcgaag aagacgaggc tgaaacggaa      2580
     caggaggaga tcgccagtgg aagcagtgct gccggcaaac gctctacgcg aggaaatttg      2640
     ccagtacggt tcaacgatta cgtcgtggat gttgctatgg ccgtggaagc agaaccagcg      2700
     agttatggcg aggcagtcgc tggacctgaa aaggatttgt ggaccgaagc catgcgtgaa      2760
     gagttccagt cgttaatcaa gaacaagacc tggaagttag tagacctacc agccgggcgc      2820
     aaaccgattg gctgtaagtg ggtttaccgt cgtaaagaag acagcgaagg gaacatcacc      2880
     cgtttcaagg cgcgcttagt cgctcaaggc tttacacagc agtatggcgt cgactatagt      2940
     gaggtgttct ctcctgtggc gagtcaaaca acattgagag ttttgttgtc ggtggcgggc      3000
     cacaaacaga tggcagtgca gcatttggat gtaaaatgtg catacctgca tggaaaactg      3060
     acggaagaga tttttatgca gcaaccgcca ggttttgtgc aaagaggtag tgagaagaag      3120
     gtttgcaaac tcgagcgcag tttgtacggc ctaaagcaga gtgctcgtgt ttggaacgag      3180
     acaattcacg gactactggt tgactatgga ttcgaacagt ccaaaactga tccttgcttg      3240
     tatacaatgg tgacagctga aggagcccga acatatatga tcatctatgt tgatgatatg      3300
     gttatcgcta gtaccgacgc aagagatatt acaagactgg aagtagctct gaagaagaaa      3360
     atcgagttga catcaccggg agaaatcaaa catttcttgg ggattcgaat caccagagac      3420
     gtcgatggtt atttctgtct tgatcagcaa gcgtatatca ggaaggtagc agcacaattc      3480
     ggtttggagc atgccaaagg gtcgaagcac ccgctcgatg ttggatactt caaaagccgc      3540
     gaaggaagca acaagttgcc gaataataat cgctaccgca gcctagtcgg ggcgctactg      3600
     tatatagctc tcaacactcg cccggatata acagcaagcg tcacgatctt gagcaggcag      3660
     acaagtgaac caactgaagt ggactggagt gagctcaaaa gagtcgtccg atacttgatg      3720
     aagactagca aatacaagtt gaagttggca agcaacagga agaatccggt ctcgctacat      3780
     ggatattgtg attccgactg gagtggcgat actgcagata ggaaatctac aacgggatat      3840
     ttattccagc taggagacgc tactgtgtgt tgggtaagcc gcaaacaaac cagcgtggct      3900
     ctctcaagca tggaagcgga atacgcagca ttgtcagaag catgtaagga gttactttgg      3960
     ctacgacgac tgttggagga ttttcaggag attcaaccgg agccgacaat agtttacgaa      4020
     gacaacagaa gttgcatcga cttcgtacaa cttgatcatc tgtcacgtcg atcgaagcat      4080
     atagataccc ggatgcattt cgctaaggat cttgcagaga aaggtgttgt tgggcttcaa      4140
     tattgcagtt cagaagaaat gaaggcagac atgctgacca agcctttggg aagcgtaaag      4200
     ctgaaggttt ttgcggaagc tattggatta gtggttgctg attgagaaga ttgataaaga      4260
     acatatcgag gaggag                                                      4276
//
ID   Copia-200_AA-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.08, Created)
DT   19-DEC-2018 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-200_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-259
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-259
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1516-1516 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 259 BP; 59 A; 54 C; 61 G; 85 T; 0 other;
     tattgatgag tagtgattga cgatatcttc tttatggcaa cactgcctcc gttaaacggc        60
     gtcggcgagt gaagagtaga aaaaaatgtt cattgtttca ttccaagtta agctatcgaa       120
     taaagcacac gtagtgaaaa gtttgtccgt ttttattctc ttccacggtg acgcgaatct       180
     cgagtggttt tctccggtcg gttatccgtt ccgttcggat tgttcgctgc gtagcctgct       240
     ggtgttgcat attcccaca                                                    259
//
ID   Copia-20_AA-I repbase;    DNA;    INV; 4016 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4016
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4016
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 76-76 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..4015
FT                 /product="Copia-20_AA-I_1p"
FT                 /translation="MGDSRKDSVHGIPLFSGTGFDNWRFRVEKYLKSVKLL
FT                 DVLKNDPPAEVAELTKFQEDDGKAAYLLISFIHDDLLDLVRDKETSKEIWN
FT                 SLETVYAKKSVSSQTFVRKQLAKLRMLEGASVKDHLKTFEELIRQLKLAGA
FT                 KLEENDIVSQLFATLPESFDPLVTALENLGEENLKLDVVRERLLAEELKKT
FT                 DRADSYQEKPAAFQGSKQKSGKFTGKCNRCQRKGHKAKDCRVKLKTDRHAE
FT                 ANAASGGKAVAFMTGRCSQTQDKNVVSFKLDSGASDHIVNVKHCFADLTKL
FT                 KQPVVINVAKDDQSLISWHRGTIKGVNREGNYISLNDVLFVPDLRANLISV
FT                 KKMAKADLDVTFTKKEAILKHGRDLIARCPMRGDFYELDLRVNTVAANMCG
FT                 AVNGNLWHRRLAHLGSKNLQALVKHDMVTGIPEDPGKFDFCDVCVLGKQCR
FT                 EPFTGTRVRAARPLERVHSDVCGPITPAAWDGSRYFVTFIDDYTHFAVAYP
FT                 IKKKSEVFQKFREYEAMASAALGHSISKLTVDQGREYCSNAQRDFYVSKGI
FT                 QVEPTAAYTPQQNGVSERFNRTIVEKVRAMLIEAKVPKNLWNEAVLAAVYL
FT                 TNRSPTNAVSCWKTPAEMWTGHKPDVSKLRVFGCKAFAWVSTAKRGKLDPK
FT                 SKPAVMIGYAPNAYRLWDKEKKLFLARDVKFDESNFPFATEMRDEIPLVVA
FT                 PYDFEDQNDVECVQPSEQSVQSDEPLVAQYNDILTDDEESEVEDDGVEATG
FT                 ALPSQIDRGSNLEMETPRRSERERRLPGKLKEFLVGKIFTAAQSHSTDKVR
FT                 NLPDVPFDGSVGQDEAERFIFDVPEAYKEIAGRADEALWQQAVGEELQSLA
FT                 DNHVWRLVRCPAGVVPLKSKWVFRIKPDEHGEPVRYKARLVAKGFQQKPGV
FT                 DYNETYSPVAKLATIRVVLAVATHRRMHVHQLDVKTAFLYGELEEDVYMAV
FT                 PEGVTAPPNLVCKLERSLYGLKQSPRCWNNKLNDLLLNFGFTRSRHDYCLY
FT                 TRIDDRGGVYIIIYVDDLLIASDRLDLLKEIKRALSKKLRMTDCGVVNHFL
FT                 GIKIRYDHATGCMYLTQEAAVDRVLTKFGMQTSNPVKTPMEKGCLLPVRAA
FT                 NPVSHPYRQLLGSLMYTMLCVRPDICYAVGYLGRFQVQPGEAHWQALKRVV
FT                 RYMQGTKKLKLKYKLNDDAEALVGYADADWASDAEDRKSVSGYIFKVFGNT
FT                 VSWASRKQQTVALSSCEAEYAALSAAASEGLWLHGILEDLKQVRPGTAFKL
FT                 FEDNLGCIAMATNTESKRVKHIDVKHHFLRDHVAQGRLQIEAIGTANQIAD
FT                 TFTKALEPGRFRELRTLLGLTDSEG"
XX
SQ   Sequence 4016 BP; 1037 A; 954 C; 1121 G; 904 T; 0 other;
     ggttatgggc gactcacgca aggattcggt ccacgggatc ccgttattct cgggcaccgg        60
     tttcgataac tggcgttttc gagtggagaa atatttgaag tccgtgaagc ttttggatgt       120
     actcaagaac gatcctccgg cggaagtggc cgagctcacg aagttccagg aagatgacgg       180
     taaggcggcg tacctgctga tctcattcat ccatgacgat ctgctggatc tggtgcggga       240
     caaggagacg tccaaggaga tttggaatag ccttgaaacc gtttacgcta agaagtccgt       300
     ctcatcgcaa acgttcgtca ggaagcaact tgcgaagctg cggatgttgg aaggtgcgtc       360
     cgtgaaagat cacctgaaaa ccttcgaaga gctgatccgg caactgaagc tggctggagc       420
     gaagcttgaa gaaaacgata ttgtgtccca gctgtttgct acccttcccg agtcgttcga       480
     tccgttagta acggcgttgg aaaatctagg tgaggaaaat ctcaagctgg atgttgttcg       540
     cgagcgactt cttgccgagg agctcaagaa aaccgaccgg gcggattcct accaagaaaa       600
     acctgcagca tttcaaggat caaagcaaaa gtctggtaag ttcaccggaa agtgcaatcg       660
     ttgccagagg aagggacaca aggcaaagga ctgccgtgtg aaattaaaga cggataggca       720
     cgctgaagct aacgctgctt ctggaggtaa ggcggtggct ttcatgaccg gaagatgttc       780
     ccaaacgcaa gacaagaatg tggtttcctt caagctggat tccggagcat cagaccacat       840
     tgtaaacgtg aagcattgtt tcgccgacct cacgaagctg aagcaacctg tcgtcattaa       900
     cgtggcgaag gacgatcaat ccctgatttc ctggcaccga ggcacgatca aaggcgtcaa       960
     cagggaaggt aactatatca gcctgaatga tgtccttttc gtacctgatc ttcgagcgaa      1020
     cctgatatct gtaaagaaga tggcaaaagc ggatctggat gtcacattca cgaaaaagga      1080
     agcaatcctc aagcacggtc gtgatctgat tgcgagatgt cctatgcggg gagacttcta      1140
     cgagctcgat ctccgcgtca atactgtggc ggccaacatg tgtggagctg tgaacggtaa      1200
     tctgtggcat cgtcgactgg cccatttggg gagcaagaac ttgcaggcac tcgtcaagca      1260
     tgacatggta acaggtattc ctgaggatcc aggtaaattt gatttttgcg atgtttgtgt      1320
     tctcggaaag cagtgccgag aaccattcac gggtactaga gtgcgtgctg caagacctct      1380
     agaacgagtg cactccgatg tgtgcggtcc aatcacacca gcggcttggg atggttctcg      1440
     gtactttgtc acctttattg atgattacac gcacttcgca gtagcatatc ccatcaagaa      1500
     gaagtccgag gtgttccaga agttccgaga gtatgaggcc atggctagtg ctgctctggg      1560
     gcattcgatt tcgaagttga ctgtcgatca agggcgcgag tattgctcca acgctcaacg      1620
     ggatttttac gtttccaagg ggatccaagt cgagccaacc gcagcgtaca ctccacagca      1680
     aaacggggta tccgaacggt tcaatcggac aattgtcgag aaggtgcgtg cgatgctgat      1740
     tgaagccaaa gttccgaaaa atttgtggaa cgaagcggtc ttagcggcgg tatacctgac      1800
     aaacaggagt ccaacgaacg cggtatcatg ttggaagact cctgcggaaa tgtggactgg      1860
     tcacaagccg gacgtgagca aattacgtgt tttcggctgt aaagcgtttg cttgggtgtc      1920
     cacagcaaag agaggcaaac tggacccgaa gagtaagcct gctgtgatga tcggctatgc      1980
     gccgaacgcc tatcgcctgt gggacaaaga gaagaagtta ttcttggcca gagatgtcaa      2040
     gtttgatgag agcaattttc cgtttgccac tgagatgcgt gacgaaattc ctttggttgt      2100
     ggctccgtac gatttcgagg atcaaaatga tgtggaatgc gtgcaaccct ctgaacagtc      2160
     cgttcaatcc gatgagccgc tggtggctca atataatgac atcctgactg acgatgaaga      2220
     aagcgaggtt gaagacgacg gagttgaagc gaccggagcg ctcccttcgc aaatagaccg      2280
     tggttcaaac ctcgaaatgg aaaccccgag gcgcagcgaa cgggagcgca gactccccgg      2340
     taagttgaaa gaatttctgg ttggaaaaat tttcactgcc gcgcagtccc attctacaga      2400
     taaagtccga aaccttcctg atgtgccatt cgacggttct gtgggacaag atgaggccga      2460
     gcgttttatc ttcgatgtgc ctgaggcgta caaggagatc gctggacggg ccgacgaagc      2520
     cctttggcaa caagcggtcg gtgaagaact gcagtcgcta gcggacaacc atgtttggcg      2580
     actggtaaga tgtcctgctg gtgtggttcc gcttaaatcg aaatgggtct tccgaatcaa      2640
     gccggacgag catggcgaac cagttcgtta caaggcgcgc ttggtagcga aggggttcca      2700
     gcagaagccc ggagtcgact acaacgaaac gtattccccc gtagcgaagt tggccacgat      2760
     acgtgtcgtt cttgctgtag caacccaccg aaggatgcac gttcaccaac tcgatgtgaa      2820
     gaccgcattc ctgtacggtg agcttgaaga agatgtctac atggccgtac ccgaaggagt      2880
     cacggcccct ccgaatctcg tctgcaagct ggagcgatca ctgtatggac ttaagcaaag      2940
     ccctcgctgt tggaataata agctgaacga ccttctgcta aatttcggtt ttacccgttc      3000
     ccggcatgac tactgtctgt ataccaggat cgacgatcga gggggggtat acatcatcat      3060
     ctacgtagac gatttgctca tcgctagcga tcggctggac ctgctaaagg agatcaagcg      3120
     tgctctttcc aagaagctcc ggatgacgga ttgcggcgtt gttaatcatt ttctcggaat      3180
     caagatccga tacgatcacg ctactggatg tatgtacctg acacaagaag ctgctgtgga      3240
     ccgtgttctg acgaagtttg ggatgcaaac cagcaatccc gtcaagaccc cgatggagaa      3300
     aggctgctta ctgcccgtac gagctgcgaa tcctgtgtcg catccctatc gtcaattgct      3360
     gggcagcctc atgtacacga tgctgtgtgt ccgacccgac atatgttatg cggttggata      3420
     cctgggtcgt ttccaagttc aacctggtga agcccattgg caagcgctga aaagagtagt      3480
     ccgttacatg cagggtacga agaagctgaa actcaaatac aagttgaacg acgacgctga      3540
     ggcactggtc ggttatgcgg acgccgactg ggcatcggat gctgaggata gaaaatccgt      3600
     tagcggctac atcttcaagg tttttgggaa caccgtgtcc tgggccagcc gcaagcaaca      3660
     aaccgttgca ctgtcgtcat gcgaagctga gtatgcagct ttaagcgccg cggcctccga      3720
     agggctatgg ctgcatggaa tcctcgaaga cctgaagcaa gtccgaccag gcacggcatt      3780
     caagttgttc gaagacaacc ttgggtgtat tgcgatggcc acaaacactg aaagcaagcg      3840
     tgtgaagcac attgatgtga aacaccattt tctacgcgat catgtggctc aaggacgact      3900
     tcaaatcgaa gcaattggta ccgcaaacca gatagcggac acgttcacca aggccctgga      3960
     acctggacgt ttccgcgaac tgaggaccct cctaggactt accgattcag aggggg          4016
//
ID   Copia-20_AA-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_AA_;
KW   Copia-20_AA-I; Copia-20_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-193
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 949-949 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 193 BP; 52 A; 44 C; 32 G; 65 T; 0 other;
     tgttggagta aatcggtaac gcagtgtgct gatgacctcc ttggagaccg atggtctccc        60
     tagcaaccga agttttcttt aataaacaac ggtgcaattt ttttcattcc tgttcaagtc       120
     tccactcaag ctagttaaat aaaattcctt tctactctta aaactttgtt ccggttattt       180
     ccaaccatca aga                                                          193
//
ID   Copia-20_CQ-I repbase;    DNA;    INV; 2937 BP.
XX
AC   AAWU01016025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_CQ_;
KW   Copia-20_CQ-LTR; Copia-20_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2937
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 355-355 (2011).
XX
DR   GenBank; AAWU01016025; Positions   41345   38409.
XX
CC   Positions [1459-1983] - Integrase core
CC   'ATCAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..2919
FT                 /product="Copia-20_CQ-I_1p"
FT                 /translation="MADQRYALPRLTSVNYHTWKFKMEMLLIKERLWSVIS
FT                 KEKPQVPSEQWVEKDEVARATIGLWVDDNQARLIKTCKSAKEAWEKLKDHH
FT                 DQRSVVYLLKKLARLDLPEGGEVEEHIQVFNELVQRVEDAWQEIPDKLRVA
FT                 LMMVSLPDSFDPLVTAIQQRPVEEITSDLLQASLMAEAEKRRERSSAVESG
FT                 DKALRSNVIKGKGGKGGTKQQQQQLCNHCHQPGHFWRKCPERKKEESTNMK
FT                 PESSKEGEVKAKQADVSDEPLAWMTGHGGSAEWYVDSGASRHMTGDKRFFK
FT                 ALQEKVSVSVTLADGKKAEVRGTGSGTIVGVNGEGNPVDIELHDVLYVPKL
FT                 TSGLISVSTLAAKGFEVVFNGERCEVRNRAGVVAAQGTRHGSLYRLCTPDQ
FT                 AMITVQRSHTANCLHTWHRRLGHRDQEVVQAIPGKFAEGIKVEDCGVRMLC
FT                 SSCMEGKMSRTPFPKQAVHDTKDKLDLVHTDLSGPMEETPSGNRYYLSLID
FT                 DYTRMTFVYLIRNKSDAAGKIENFVKFCKTQIGKSPRVIRSDGGGEYVNKA
FT                 LQEFLRREEIVSQFTAPYSPQQNGVAERKNRYLKESSLCMLRDAELEPKYW
FT                 GEAVLTATYIQNRLPSRSIGISPFEKWYGRKPSLEHMKIFGSEAWVQVPAQ
FT                 KRKKMDVKARKLVFVGYSNEHKAYRFVDKQSERVTISRDVKFVEDLRMPDE
FT                 RKCSEFESESVKHDREEQEVSPMEPIVRNELSDDDSFEGYESAEDLFNGEE
FT                 VVQEAAAPGDPPGPGGVDGEPPALEAAPRAPDTEPAGQGQQLRVLPDRSTR
FT                 GQLPVRLENYEVGLVVMEQDEPAAYEKAVRCPEKEEWVRANNASKKKQTKV
FT                 CRLLKSICGLKQAARVWHRTIAGKLSRLRFERCNSDSSIYKQPIGKDGIFL
FT                 LIYVDYLVACKQEEKINRIERDKERAVPKLDDGGAQG"
XX
SQ   Sequence 2937 BP; 774 A; 711 C; 962 G; 490 T; 0 other;
     ggttttgtgc ccaggaacgc agcggaagag gagttcggtc gcgcggaagc tgaggaaaaa        60
     gttgcagccg gacgattggt gaaaagttcc ggcaagatgg cggaccagcg ctacgccctt       120
     cccagactga ccagcgtaaa ctaccacact tggaagttta aaatggagat gttgctcatc       180
     aaggagcggt tgtggtcagt aatctccaag gagaagccgc aagttccctc ggagcaatgg       240
     gtggagaagg acgaagtggc gcgtgcgacg attggcctgt gggtggacga caaccaggct       300
     aggctgataa agacctgcaa atcagcgaag gaggcctggg agaagttgaa ggaccaccac       360
     gaccagcgtt ccgttgtgta cctcctcaag aagctggccc ggctggacct tccggagggc       420
     ggcgaggtgg aggagcacat ccaggtgttc aacgagctgg tgcaacgagt cgaggatgct       480
     tggcaggaga ttccggacaa actccgagtg gccctcatga tggtttcgtt gccagactcg       540
     ttcgatccgc tcgtcacggc cattcagcaa cggcctgtcg aggaaatcac gtcggatctg       600
     ctgcaagcca gcctgatggc agaggcggag aagcggcgtg aacgttcaag cgcggttgaa       660
     agcggagaca aggctctacg ctcgaacgta atcaaaggaa agggcggcaa gggtggcacc       720
     aaacagcagc agcagcagct ctgcaatcac tgccaccagc ctggccactt ttggaggaag       780
     tgccccgaac ggaagaagga ggagtcgacg aacatgaagc cagagtcaag caaggagggc       840
     gaggtcaagg cgaagcaagc agacgtttcg gacgaacccc tcgcttggat gaccggtcac       900
     ggaggatcgg cagaatggta cgtcgacagc ggcgcgtcgc ggcacatgac cggcgacaag       960
     cggttcttca aggcgcttca agagaaggtg agcgtcagcg tgacgctcgc agacgggaag      1020
     aaggcggaag ttcgaggcac cggaagcgga accatcgtcg gagtcaatgg tgaaggaaat      1080
     ccggtcgaca tcgagctcca tgacgtcctc tacgttccca aactcaccag cggactaatt      1140
     tcggtgagca cacttgcagc gaaaggattc gaagttgtgt tcaacggcga acgctgtgaa      1200
     gtccggaacc gtgcaggagt agtagcagcc caaggaactc gccacggaag cctctaccga      1260
     ttgtgcactc cggaccaagc aatgatcaca gtgcagagga gccacactgc caactgccta      1320
     cacacctggc atcgtcggct cggtcaccgt gatcaagagg tggttcaagc gattccgggg      1380
     aagtttgcgg aagggatcaa ggttgaggac tgcggcgtac ggatgctctg cagcagctgc      1440
     atggaaggga agatgtctcg cactccattc ccgaagcagg ctgtgcacga cacgaaggac      1500
     aagctggatt tggtgcacac ggatttgagc ggcccgatgg aggaaacccc gagcggaaac      1560
     aggtactacc tgtcgctgat cgacgactac accagaatga cgttcgtgta cctgatccgg      1620
     aacaagtccg acgctgcggg caagatcgaa aactttgtca agttctgcaa gacccagatc      1680
     ggaaagagcc cgcgcgtcat tcggtccgat ggaggcggcg agtacgtcaa caaggcgctg      1740
     caggaatttc tgcgccgaga agaaatcgtg agccagttca cggcgccgta ctctccgcag      1800
     cagaacggag ttgccgagag aaagaaccgg tatctcaagg agtcgtctct gtgtatgctg      1860
     cgcgatgcag agttggagcc gaagtactgg ggcgaagccg tgctgacggc gacctacatc      1920
     cagaaccgtc taccgtcgcg gtcgattggg ataagtccgt tcgagaaatg gtacgggagg      1980
     aaaccaagcc tagagcacat gaagatcttc gggagtgagg cgtgggtgca ggtgcccgca      2040
     cagaaaagga agaaaatgga cgtgaaagcg cgaaaactag tgtttgtggg atactccaac      2100
     gaacacaaag cataccgttt tgtcgacaaa caaagtgaac gtgtgacgat aagtcgtgat      2160
     gtgaagtttg tcgaggattt gcgtatgccg gacgagagaa agtgcagtga attcgaaagt      2220
     gaatcagtga agcacgaccg tgaagagcaa gaagtgtccc cgatggagcc catcgtgcga      2280
     aacgagctgt ctgatgatga ctctttcgag ggttacgagt ccgccgagga tctgttcaac      2340
     ggcgaagaag tggtgcaaga ggcggcggcg ccgggtgacc cacctggacc gggtggggtg      2400
     gatggtgaac cgccagcact ggaggccgca ccgcgagcac cggatacaga gccagcaggt      2460
     caaggacaac agctgcgagt gctgccggac agatctacgc ggggacagct gccggtcaga      2520
     ctggagaact acgaagtcgg cctggtggtg atggagcagg acgaaccagc ggcgtacgag      2580
     aaagctgtac gttgtcctga aaaggaggag tgggttcgag cgaacaacgc cagcaagaag      2640
     aagcagacca aagtgtgccg actgctgaaa agcatttgcg gtctcaaaca agcggcgcga      2700
     gtgtggcacc ggacgatcgc cggaaaactg tcgcggttga gattcgagcg gtgcaattcg      2760
     gattcgagca tctacaagca gccaatcggc aaggacggga tatttctact catttacgta      2820
     gattatctcg ttgcttgcaa gcaggaggag aagatcaaca ggatcgagag agataaggag      2880
     agagcggtgc caaaactgga cgacggagga gcccagggat gaatccgcga ggaggag         2937
//
ID   Copia-20_CQ-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   AAWU01016025;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_CQ_;
KW   Copia-20_CQ-I; Copia-20_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 356-356 (2011).
XX
DR   GenBank; AAWU01016025; Positions   38408   38174.
XX
SQ   Sequence 235 BP; 53 A; 70 C; 53 G; 59 T; 0 other;
     tgttgagcca ccctattgga ggtgacgtgc gcggatgcaa ccctgcgcac aacggcgccg        60
     ccgttcaaga gaaaaagtga cacgtcacac acagttgttt ctaagccagc ttcgcaacaa       120
     taaagacaca ttttgttgtt actcgcgcgt attttatttc cggcaaagtt aaccggatcc       180
     gtccctcctt ttcgcgttcc ctgctgccgt cggtactctg ctaatccggc caaca            235
//
ID   Copia-20_SI-I repbase;    DNA;    INV; 4110 BP.
XX
AC   AEAQ01023503;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_SI_;
KW   Copia-20_SI-LTR; Copia-20_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4110
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023503; Positions    6628    2519.
XX
CC   Positions [1571-1981] - Integrase core
CC   'GTAAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           407..1981
FT                 /product="Copia-20_SI-I_1p"
FT                 /translation="MKRIKAFFEPKTLNALLELLREFFSYSWKSNDTVGTF
FT                 VAGLKVIARKIEALDSEDFGNKFNEKLVMAKILGCLPKDFDSFVTSWSILS
FT                 EEMSLEFFLEKLANAERNIEGCTDDVSVEAFKSQCKSANGQVMKTNEKKFK
FT                 GKCHKCGKIGHLKRDCRSKSDKSEKQEATKSQKEMKEFKDVQEKELSASSA
FT                 HRLKDEGCIIADSDGSVHHTGNVEWFSLLRKIDVPLTLNIADGKTLKATHV
FT                 GDIRIEKSIDGKKWEKRVWKTVYYCEDMGSESLFSTTFMEKTRGYGFYHGN
FT                 GTMQLMDGRKTILGERRINSQYVPFIRVVPPSASVKITRSIELWHQRLGHV
FT                 SDNMIPAMVKNNLVDGLDVILKKRDDCDSCHFGKQKVSSHPTREKRECLPG
FT                 QRFHSDVCHVGIMSWNKCKYFLTLKDEASGYRRVFFMKSKEEVSSILKIFF
FT                 LAAEKETGRKAISLRTDNGTEYINEKVKEVLRELNITHELSSPNVKQCNGM
FT                 AERENRTLCDTARSLLFNADLSKTDRHLL"
XX
SQ   Sequence 4110 BP; 1354 A; 676 C; 971 G; 1109 T; 0 other;
     gattatgaga cttaatctat gctgattaaa taaagattag agacgtgtgg tattagtgag        60
     gttagaaacg cgtggtacca gtgaggttaa gagaattaca ggtaacggaa cgattgctac       120
     ggaaactaca ctgaaagaca ttcgagttac taagctcacg aaagcaacgt atagtcgttg       180
     gaaaatcgag atccgtgatg ctctggagag ttatcaaatt tgggaagtca caaccggaag       240
     gacgactaag ccaagcgagg tgagatccga ggacggcgtc gttactaatg tgaaggaaat       300
     tgatgactgg agagttaaag acagcaaggc acggtctgtt attcgatcaa cgctcgacga       360
     cacaactttt tatcaggtat gcgactgtga gacgtcagca gacattatga aaaggatcaa       420
     agcgtttttc gagccgaaga cgttaaacgc tttactggaa ttgctacgtg agttctttag       480
     ttattcgtgg aagtctaatg acacagtcgg tacgttcgta gcaggattaa aagttattgc       540
     acgtaagatt gaagctttag attccgaaga ttttggaaat aaatttaatg aaaaacttgt       600
     aatggcaaag attctaggat gcctgccgaa ggatttcgat agctttgtta caagctggtc       660
     cattttgtcg gaggagatgt ccttggagtt tttcttggag aaacttgcta acgctgaaag       720
     gaacattgag ggatgcactg atgatgtatc ggttgaagcg tttaagtcac agtgtaagtc       780
     agcaaatggt caggtaatga aaaccaatga aaagaaattt aagggcaagt gtcataaatg       840
     tggcaaaatt ggacacttaa aacgagattg taggtcgaaa tcagataagt cagagaaaca       900
     ggaagcaaca aagtcacaaa aagagatgaa agaatttaag gacgtacaag agaaagaatt       960
     gtctgcatca tcggctcacc gtttgaagga tgaaggatgt attatcgcag attctgacgg      1020
     aagtgttcat catactggta atgttgaatg gttttcacta ctcagaaaga tagatgtacc      1080
     acttacatta aacattgccg atggtaaaac gttaaaagct actcacgtgg gtgatattcg      1140
     gattgaaaaa tcaatcgatg gtaaaaagtg ggaaaaacga gtatggaaaa cggtatacta      1200
     ctgtgaagat atgggtagtg aatcactctt ttcaactaca tttatggaga aaactagagg      1260
     ttatggattc tatcacggaa atggaactat gcagttaatg gatggacgga agacgatact      1320
     cggtgaaaga aggattaaca gtcagtatgt accttttatt cgagttgtac cgccatcagc      1380
     ttctgtaaaa attactcgat caattgaatt atggcatcaa cgccttggtc atgttagtga      1440
     caatatgata ccagcaatgg tgaaaaataa tcttgttgat ggccttgatg taattttaaa      1500
     gaaaagagat gattgcgatt cctgccattt tggaaaacaa aaagtaagtt cacatcccac      1560
     tcgagaaaaa cgtgaatgct tgcctggtca acgttttcat tcagatgtat gtcatgttgg      1620
     aattatgtca tggaataaat gcaagtactt cttgacactt aaggacgagg catctggtta      1680
     tcgcagagtt ttcttcatga aatcaaaaga agaagtatca agtattctaa agatattttt      1740
     cctagcagca gagaaggaaa ctggaagaaa agctatttcg ttgagaactg ataacggaac      1800
     cgaatacata aatgaaaagg tgaaggaagt cctacgggag ctgaacatta cacacgaact      1860
     gtcgtcacca aatgtaaaac agtgcaatgg tatggcagaa cgagagaatc gtacactatg      1920
     tgatactgct cgatcgctgt tatttaacgc tgacctttca aaaacggatc gtcatctgtt      1980
     atgaaccgaa gctgttggct gcataccttc gtaatcgggt accaaaccga ggagttacaa      2040
     ctacaattcc atatagtgaa tggtatggaa agaagcctga ggtaactcac ttgagagttt      2100
     ttgaggcgaa agcttttgtt cgtatttttg actcgacaag acataagatg gatcctaaag      2160
     caaagaagat gatatttgtt ggatatgatc gtcatactga caagatatat cgggtctttg      2220
     atttcgaaaa gaagattgtg gaaagagtcg ccgatgtaac aatagaggat gtaacgaata      2280
     cgaatgagca agttcttttt ccgctaatgt tcgaagagca agaggaggtt tctaccgaat      2340
     tactcaagca agaagaaact cttgaagatt tatctagaga ggatgactct accgacgagt      2400
     tctactcaga cgaaggagaa gtaattcaag tttcatctga acctcaaaag aaaagaggac      2460
     gaccagtagg attacggtct tatcagaaac cagtgcttcc atcagatcga gtgctgcgag      2520
     ataggacgga taagtcagtt cgtattgctg caatgaatgt atctctggac ccaatctcct      2580
     acgaagatgc aatttcaaga gatgattctg actactggaa gcaagcaatg gatgatgaaa      2640
     tggcgttcat acgtaaaaat aacttgggaa cttgaattgt taccaaatga acaatctaca      2700
     gtttcatgtc gatgggttta taaatcgaag ttgcggtccg atggaacaat caaacgttat      2760
     aaggcgagat tagttgctcg aggctttagc cagacatata ttattttgag attttctcgc      2820
     cggtagtact ttatgaatcg gtgagagcaa ttttagctat cgtagctaaa tacaacatgg      2880
     aacttgtaca gtttgatgtg aagacggctt tcttgaatag tccactggaa gaagatatct      2940
     atatgcaaca gccggagggg tatgaagtgg atggatcaag tcgtgtctgt cacttaaaga      3000
     aggactgtat ggactcaagc aagcccctcg taattggaat aatatattca acgattttgt      3060
     tatgtctcat ggttttaagc gatcagaagc tgatccgtgt gtcttcgtga agggagctta      3120
     tacagatgat tggatgatac tgtctctata tgttgatgac ggcttgatag aatgtaaaag      3180
     gaagagaaca cagtgtatct ttgtttcatt gttgatctca gaattcgaag ttacgtgtca      3240
     tgagccgacg tgttatgttg gaatggaaat agctcgaaat cgagagacag ggacactatg      3300
     tatcaagcaa caaggataca tttcacgtat gttgcatcgt tttggaatgg aggactgtaa      3360
     atctgtaaag tctccaatga attcgtctat tgagtcaact gaactgaagg aaacaaaaga      3420
     tgaggaaaaa cgttttccct acagagaagc aactggctgc ttaaattata ttgctacagt      3480
     gtcgagacaa gatatctcgt atgcagtgag caaacttgcc cgatattcca atgatccaca      3540
     gcagcttcac tggaaggcag tgaaacgtgt tatgaagtat ctcaaaggta cgatcgatgt      3600
     ctcattgtat ttccacaaag aattatcaga tgaattgatt ggatattgcg attccgacta      3660
     cgctggtgaa ctggaagaaa gaagatccac gtccggatat gtttttctta ttcatggtgg      3720
     accgatcgct tgatcatcga gtctacaacg tattacagca ctctcctcat cggaagcgga      3780
     atacatgtcg atctcggaag cattaaaaga acttctttgt ttgagaacac ttgttaaatc      3840
     tcttggatta gagcaaacaa agtcaacaga gttgaaagtg gacaatcaag cagctatagc      3900
     aatgtcaaga aatccggagt tccataaaag aaccaaacat attgcggttc gatttcatcg      3960
     cgtcagacag gaacaggaag ctgggaaggt tcatgtcaca tatgtatctt caagcaatca      4020
     ggtagcagat ttacttacaa aacctctacc ttggcctacg atttcaagat gtcttggaca      4080
     aatgggaatg acgtcgggaa caagaggagg                                       4110
//
ID   Copia-20_SI-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   AEAQ01023503;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-20_SI_;
KW   Copia-20_SI-I; Copia-20_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-264
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023503; Positions    2518    2255.
XX
SQ   Sequence 264 BP; 62 A; 67 C; 50 G; 85 T; 0 other;
     tgttggagat gaatgttcct cgccgtagtt atctgttgtg atggcactac ttcatagagg        60
     cttagatcga cgggtcgata tgtttcacgc tgcgcgcctg cgcccgagca agtctctctt       120
     gcttcgtctc cttacttacg gacacacaca cacgctgctg agtgcacgtt aaaaacctct       180
     ttgtatatca ttgccaaata tatattctct gtaccaataa tcgtgtttct cactctgcac       240
     taccaaagtt aacaattttt atca                                              264
//
ID   Copia-21_AA-I repbase;    DNA;    INV; 3929 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3929
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3929
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 77-77 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..3919
FT                 /product="Copia-21_AA-I_1p"
FT                 /translation="MGTTQKDLAHGIPQFRGNIGGYENWSYRVRLFLEAAG
FT                 VSEVLTEDVPEQAAERTKFVEKDRKGKALLVSCLADDCLEVVREKTTTKLM
FT                 WESLEVTYAKKSVASQTLIRKQLARLRMKNGIDMRSHFLEFDGLVRKLKTA
FT                 GATLVEADLVSQLFLTLPDTYDPLVTALENVAEKELTLDFVKQRLLAEESK
FT                 RTDRQEEFEEVKPAAFTGHGHKQKKQQKFNGKCHGCGRRGHYKKDCRLQSK
FT                 SEANSVVKNAVSFMADVDPCRRKRAGRIVFKLDSGCSDHLVSESSVFANLR
FT                 KLDDPVEIKVAKEGQAMIAKTIGEINAVSNRGVPFNVKNVLLVPDLRENLM
FT                 SVKKMTKAGIDVLFSGDTAVLKKNGSVLATGYLXGNLFEIELFLQDRCANM
FT                 CDVDTGKLWHRRLGHISQQGLETMARNGELKGMRKAPKIGICEACIQGKQC
FT                 REPFNGTRVRATRPLERIHSDVCGPIDPAAWDGSRYFVSFIDDYSHFGMIY
FT                 PIKRKSEVFEKFKEYEAAVTAMIGKSISRMTVDQGREYFSTDQKNYYKHKG
FT                 IQVEPTVAYTPQQNGVAERFNRTLVERIRSVLIDSLVPKNLWSEAALACVY
FT                 LLNRSPTSALPSGVSPAELWFNSKPNLDKLRIFGCKSFAWIPAQNRKKLDP
FT                 KSREMVMIGYAPNGYRLWDKKSRKIIIARDVKFDESSFPYADIENMKPDID
FT                 VPLLVRFPFEQEGEGEVEVEAESEAQNEDVAVPDNHEQVDARESEPEEEFS
FT                 DALPLQTERPIQESRHSGRERRLPGKLLDYLTGYRATSASLLLPDAPETFA
FT                 EINGRPDRKVWLKAVEDELRSMDENHVWYFTSCPAGVKPLKSKWIFRVKED
FT                 VNGQPVRYKARLVVKGFLQKQGLDYDEIFAPVAKLTTIRIILSAGIHQGFH
FT                 FHQMDVKTAFLHGELKETIFMEIPDGVDAPPNTVCRLVKSLYGLKQSPRCW
FT                 NEKFNQKLLELGFKRSMHDYCLYTRILPGDEIYIVLYVDDLLIVGRKKSSI
FT                 LKLKKQLMSVFAMSDCGEANHFLGIKLEYNEDRTRIRLSQVSNIEKMLNRF
FT                 QMSDCNPVKTPLEKGLLLHEDGESTNEPYRELLGTIMYIMLCTRPDLCFPV
FT                 SYLGRFQQKPSSSHWKCLKRVVRYLKGRKSRHLEFKRNNDAEILIGYADAD
FT                 WASDTLDRKSVSGYVFEVFGNLVSWSSKKQTTVATSSSEAEYVALSSAASE
FT                 GIWIAGVLEDLQLKQKDEAFVIYEDNQGCIGMARNFESKRSKHIDIKHHFL
FT                 RDHIANGRLKIEHVATQHQLADMFTKPMDQKRLDELCSQIGMAD"
XX
SQ   Sequence 3929 BP; 1175 A; 784 C; 1058 G; 908 T; 4 other;
     ggttatgggc accacgcaga aggatctcgc tcatggaatc ccgcaatttc gcggaaatat        60
     tggaggatac gaaaattgga gctaccgtgt caggcttttc ctggaagcgg ccggagtctc       120
     ggaggtgcta acggaagatg tgccggaaca agcagccgag aggacgaaat tcgttgaaaa       180
     ggatcgtaag ggaaaagcgc tgttggttag ctgcctggcg gacgactgtc tkgaggtagt       240
     tcgcgaaaag acgacaacta agctgatgtg ggaaagtttg gaggtaacat acgctaagaa       300
     gtccgttgcc agccagactc tcatccggaa gcaactggcg cgcctccgta tgaagaacgg       360
     aatcgacatg agaagccatt ttctggagtt cgatggattg gtwagaaagc tgaagacggc       420
     cggcgcgact ttggtggagg cagatctggt gtcgcagctt ttcttaacgt tacctgatac       480
     ctacgaccca cttgtaackg ctttggagaa cgtggctgag aaagagttaa cgctggattt       540
     cgtcaagcaa cggttattag cagaagaatc gaaacggact gatcgccagg aagaattcga       600
     agaggtgaaa ccggcagcgt ttactggcca tggacacaag caaaagaaac agcaaaagtt       660
     caacggaaag tgccacggat gcggtaggcg gggtcattac aagaaagatt gccgtctaca       720
     aagcaaaagt gaagcaaatt cagttgtgaa gaatgcggtg agtttcatgg cggatgtgga       780
     cccatgtaga cgcaagagag ccggaaggat cgttttcaaa ttagattccg gatgcagtga       840
     tcacttggta agtgaaagct ccgtatttgc aaacctgcgc aagttggacg atccggtaga       900
     aattaaagtt gcaaaggaag gccaagcaat gatagccaag acgatcggag aaatcaacgc       960
     tgttagtaac cgaggagtgc cgtttaacgt caagaatgtt ctactcgtgc cagacttaag      1020
     ggagaactta atgtcggtca agaaaatgac gaaagctggt atcgatgtgc tgttctccgg      1080
     agatacggca gtcttgaaga agaacggaag cgtgctggca actggatacc taaamggcaa      1140
     cttgttcgag atagagctgt ttctgcagga tcgttgtgca aatatgtgtg acgtcgatac      1200
     cggaaaactg tggcatcgca gattaggcca tatcagccaa caaggacttg aaacgatggc      1260
     ccgaaatggt gaattaaaag gaatgaggaa agcacccaag atcggcatct gcgaagcatg      1320
     tatccaaggt aagcaatgta gggaaccttt taatggaacc agagtccgag caactcgccc      1380
     ccttgaaaga atccattcgg atgtgtgtgg gcctatcgac cctgcagcat gggacgggtc      1440
     ccgatatttt gttagcttca ttgatgacta cagccacttt ggaatgatct atccgataaa      1500
     aagaaaatcc gaagtttttg agaagttcaa agaatatgaa gcagcagtga cagcgatgat      1560
     tggcaaatcg atttcgcgga tgacggtgga tcaaggacgg gagtattttt caactgatca      1620
     gaaaaactac tacaagcaca aaggtatcca agtagaaccc acggtggcgt acacgccaca      1680
     acaaaatggt gttgcggagc ggttcaaccg aacactcgta gagagaatcc gttcagtcct      1740
     catcgattca ctggtaccga aaaacttatg gtccgaagca gccctggcgt gcgtctatct      1800
     tctgaatcga agccctacgt cagccttgcc aagtggtgta tctccggcgg agctgtggtt      1860
     caactccaaa ccaaatttgg ataaattacg gatcttcgga tgcaaaagtt ttgcatggat      1920
     accggcgcag aataggaaga agctggatcc gaaaagccgc gaaatggtga tgattggtta      1980
     tgcccctaat ggctaccggc tatgggacaa gaaatcgagg aagataatca ttgcgaggga      2040
     cgttaagttt gatgagagtt cgtttccata cgctgacatt gagaacatga agcctgatat      2100
     agatgtgcca ttgctagttc ggttcccttt cgagcaagag ggggaaggtg aagttgaagt      2160
     cgaggcggaa agcgaagccc agaacgaaga cgttgctgta cctgataatc atgagcaagt      2220
     cgatgctcgt gaaagtgaac cggaagaaga gttcagcgac gcgctccctc tgcaaacaga      2280
     acgaccgata caagagtcga ggcacagcgg acgggagcgc aggttacccg gtaagttgtt      2340
     agattactta actgggtata gagcaacttc tgccagttta cttctaccag atgcccccga      2400
     gacattcgct gaaatcaatg gccgccccga tcgaaaagtc tggctgaaag cggtggaaga      2460
     cgagcttcgt tcgatggatg agaatcacgt gtggtacttc acgagctgtc cggcaggtgt      2520
     taaaccgctg aagtcaaaat ggattttccg agtgaaggag gacgtgaacg gtcagccagt      2580
     acgatataaa gcccgactgg ttgttaaagg ttttcttcaa aaacaaggac tggactatga      2640
     cgaaatattt gcgcccgttg caaagttaac cacaattcgg atcatactgt cagccggcat      2700
     ccatcaaggt tttcatttcc atcaaatgga cgtgaaaacg gctttcctgc atggagaatt      2760
     gaaggaaacg attttcatgg aaattccaga tggcgtcgat gcaccaccaa acactgtatg      2820
     tcgattagtc aagtcactat acgggttgaa acaatccccg cgttgttgga acgagaagtt      2880
     caaccagaag ctgttagaac taggattcaa acgatcaatg cacgactatt gtttatatac      2940
     aagaattcta cctggagatg agatctacat cgtgctttac gtagatgacc tgctgatcgt      3000
     tggtaggaag aaatcgtcaa tcttgaaact caagaagcag ctgatgtctg tttttgccat      3060
     gtcagattgt ggagaagcta accatttctt gggaatcaag ctggaatata acgaggatcg      3120
     caccagaata cgtttatcgc aagtgtcaaa tattgaaaag atgttgaatc gtttccaaat      3180
     gtcggattgt aatccagtta aaacaccact tgaaaaagga cttttgctgc acgaagatgg      3240
     agaatctaca aatgaaccgt atcgtgaact gctgggtacc ataatgtata taatgctgtg      3300
     taccagacca gacctgtgtt ttcccgttag ttatctgggg cgttttcaac agaaaccttc      3360
     atcatctcac tggaaatgtt tgaaaagagt ggtacgctac ctgaagggaa ggaagtcaag      3420
     gcatttggag tttaagcgaa acaatgatgc ggaaattttg atcggttatg cagacgctga      3480
     ctgggcatcg gatactttgg acaggaagtc ggtgagcggc tatgtgtttg aggtgtttgg      3540
     aaatctggtg tcttggtcaa gcaagaagca gactacagtt gctacttcgt ccagcgaagc      3600
     tgaatatgta gctttgagtt ccgcagcgtc agaaggaata tggatagcag gggtacttga      3660
     agatctacaa ctgaagcaaa aggacgaagc cttcgttatt tacgaagata atcaaggatg      3720
     tatcggaatg gcccggaact ttgaatcgaa acgatcgaaa cacatcgaca taaagcatca      3780
     tttcttgcgt gatcatattg cgaatggacg tctgaagatt gaacatgttg caactcagca      3840
     tcagctagcg gatatgttca cgaagccaat ggaccagaaa cgactagatg agctatgcag      3900
     ccaaattgga atggccgatt gagaggggg                                        3929
//
ID   Copia-21_AA-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_AA_;
KW   Copia-21_AA-I; Copia-21_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 187 BP; 54 A; 50 C; 26 G; 57 T; 0 other;
     tattaacata gtagcaatcg ccctaaccct aggtgttact atcatagcaa ccgccctctg        60
     ttatttttcc taacaagcta ttccatccca atactccaac cagttaagac gtgttatcaa       120
     taaagctagt ttgttcgtta cgttacgtgt tcgtgtcttc actacaaacg agccaagacc       180
     ctcaata                                                                 187
//
ID   Copia-21_CQ-I repbase;    DNA;    INV; 1888 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_CQ_;
KW   Copia-21_CQ-LTR; Copia-21_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1888
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 357-357 (2011).
XX
DR   [2] (Consensus)
XX
CC   'GTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1806
FT                 /product="Copia-21_CQ-I_1p"
FT                 /translation="MEYEFVSHAFDGTNFSCWSFRIEADLKAQKLHHCIER
FT                 TLEEESFFTVVAEEGVAERVRKEALQKSRKEEDEKCKLFLLKTIAEPQREA
FT                 VRGMSSPKLMWEALKEVSDRKAARAGSNGTFPFKCRVCGKPGHTKVDCPWK
FT                 KKVKQAAGSVQQLKKGKVHAAESSAGAKEDVPFVPEAEEANNEEADGKFRW
FT                 VLDSDVSEHMVGDWNLLVNVSRMETPKVVNVAELESQEEVPEDKVCTDDQL
FT                 DSEESDADDTVQEEEDVPEENAVPELEEAAGERRGRVKKHPAKPDHELKLK
FT                 WLARLVDEIPDTNEVLQKRDDWPLWKRAIDDELRSLEKNRTWDLVEAPAGR
FT                 RVLCCKWVLRIKKEVDGIAARYKARLVVTGCSQRAGYDYKEKNARIVAREL
FT                 PAEAVEQLHQTEVRKLPGFERGIKVRKMNKSLVGAKALLKSRKKRYRCRML
FT                 FKKISKLEGAQTERDRRSAARSCGRRPGKRRRRSPLNIRFFLRTDRNRHQL
FT                 SGGKPRGEQVHYEEDLHDRKRMNLGASATTTSVIVGQEGLTELPVPPDK"
XX
SQ   Sequence 1888 BP; 505 A; 413 C; 641 G; 329 T; 0 other;
     ggttgtgtgg cccagcacat cgcgtggcgc gttgccaagg aaaccgcgaa cggaaggaaa        60
     aagtttttcc acgtgcgcgg acacccggga aggtgacgta gtttttttcg cgatcgaaaa       120
     gtgagttaag tttttcggga gtaagacgcg aaaagaacgt tttctagtgc gatggagtac       180
     gaatttgtgt cgcacgcgtt cgacgggacg aatttctcgt gctggagttt ccggatcgaa       240
     gcggatttga aggcgcagaa actccaccac tgtatcgagc ggacgctgga ggaggaatcg       300
     tttttcacgg tggttgcgga ggaaggcgtg gcggagcggg tgcggaagga agcactgcag       360
     aagtctcgga aggaagagga cgaaaagtgc aagttgttcc tgctcaaaac gatcgccgag       420
     ccgcaacggg aggccgtccg cggaatgtca tcgccgaagc tgatgtggga agccctgaag       480
     gaagtgtcgg accggaaagc agcgcgtgcc ggaagtaacg gaacgtttcc gttcaagtgt       540
     cgcgtctgcg ggaaaccggg gcacacgaag gtggactgcc cgtggaagaa gaaagtgaaa       600
     caggctgccg gaagtgtgca gcagctgaag aaagggaagg tgcatgcggc ggaaagcagt       660
     gccggtgcca aggaagatgt gccgttcgtg ccagaagcgg aagaagccaa caatgaggaa       720
     gcagacggaa agttccggtg ggtgctggac agtgatgttt ccgagcacat ggttggtgat       780
     tggaatctgc tggtgaatgt gagtcggatg gaaaccccga aggtggtcaa cgtggctgag       840
     ttggagagtc aagaagaagt gccggaagat aaagtgtgca cggacgatca actcgacagt       900
     gaagaatcgg atgcagatga cacagtgcaa gaagaagaag atgtgccgga agagaacgca       960
     gtaccagaac tggaggaagc tgcgggagaa agaagaggtc gcgtgaagaa gcatccggca      1020
     aagcccgacc acgagttgaa gctgaagtgg ctggcaaggc tcgtggatga gattcccgac      1080
     acaaatgaag tgctgcagaa acgcgacgac tggccgctgt ggaagcgcgc tatcgacgac      1140
     gagttgcggt cgcttgagaa gaaccgcacg tgggatctcg tcgaggcacc tgctggtcgc      1200
     cgagttttgt gctgcaagtg ggtgttaagg atcaagaagg aagtagacgg tattgctgcc      1260
     aggtacaaag ctcgtctcgt cgtgacgggg tgctcgcaac gtgcggggta cgactacaaa      1320
     gaaaagaacg cccgaatcgt cgctcgtgag ctgccggcag aagcggtgga acagctgcac      1380
     cagacagaag tacggaagct tccaggattt gagaggggga ttaaggtgcg caagatgaac      1440
     aaatcactgg ttggtgcgaa ggcgctgctg aagtcccgga aaaagcggta caggtgtcga      1500
     atgctgttca agaagatctc gaagcttgaa ggagcgcaaa cggaacgaga ccgtcgatcc      1560
     gctgctagga gttgcggacg gagaccgggg aagcgacgtc gtcgatcgcc gctcaacatt      1620
     cggtttttcc tgcgaaccga tcggaaccgc catcaactct ccggtggcaa gccaagagga      1680
     gagcaagtac actacgaaga agatctacac gaccggaagc ggatgaacct cggagcatcc      1740
     gcaacaacaa catccgtgat agttggtcag gaaggactca ccgagttgcc agttcctcct      1800
     gacaagtgac cagctcgccg atgtgttcac caagggccca agctgtttcg accgagaagc      1860
     accgaagcac tttaggtttg agaggggg                                         1888
//
ID   Copia-21_CQ-LTR repbase;    DNA;    INV; 143 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_CQ_;
KW   Copia-21_CQ-I; Copia-21_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-143
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 358-358 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 143 BP; 32 A; 39 C; 29 G; 43 T; 0 other;
     tgttggaagt caaccctaag tgcggccctg gtgattagtt tagtttagct ttaggcgcag        60
     taggctttgc cacgcgcatc ttttatataa acaccaccca ctctgtgtta gccctctttt       120
     cccgaataaa cgccaactcg tca                                               143
//
ID   Copia-21_SI-I repbase;    DNA;    INV; 4197 BP.
XX
AC   AEAQ01023582;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_SI_;
KW   Copia-21_SI-LTR; Copia-21_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023582; Positions    4580     384.
XX
CC   Positions [1652-2188] - Integrase core
CC   'ATTTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           233..2782
FT                 /product="Copia-21_SI-I_2p"
FT                 /translation="MTENFYSKNITKFDGKNYQSWKFQMKAVLVANDLMEI
FT                 VDGTKVEPEAVAERDAWKKSNAKAMFIISTSLEESQLETLITCNTATEMWA
FT                 KLRSVHEQTSETNKLILTQRFHAYRMEHNMSISQNIAKIENMARHLKDLGE
FT                 TISDVAIMAKILGSLPSKYSYLVTAWDSVDPTRQTLEYLRERLLKEEARLS
FT                 STDEMTNALAAVSLKTNQSKSESNLQKKPEISNAIRGSTVKKVECFYCHKL
FT                 GHMIKDCRNRKKKDQEKSGKLETVALVVTQSTADTTTSESVSAHSKEISEI
FT                 LSYDKDNIWYADSGASKHISFRREWFSEFHPSSGEDIVLGNEAKCKVLGSG
FT                 TIAAKRLVSGRWLDVKLEDVLYVPNFGRNLISVGYCTKKKLTVTFHDDVVT
FT                 ISRDGEYIVGGIKQENQLYRLFMKPMLHEANVASFQTWHERLGHLNKNYIS
FT                 EMAQKGLVAGLDLSNKSDFFCEDCQYGKMHRKPFRNTDRTQTMKIGDLIHS
FT                 DVCGPFQVDSLGGARFYVLFKDDFSNYRVVHFIKHKADVFDKFKEFEKSIQ
FT                 NRFGHSVKRLRVDNGREYCNKEMSNYLVKKGISLETTAPYSPEQNGKSERD
FT                 NRTLVESARAMLHAKNLPMFLWAEAINTAVYVLNRSVCSKTKDSTPYEIWT
FT                 NKKPNLSHVRIFGSNAFIHIPKVHRQKLDPKARKLMLVGYQGESSNYRLYD
FT                 PSNKRITVSRDVIFNECPSREMASSKSVCLEIGLENLSKDLPTQDIPNEVQ
FT                 ENNEQKQNQENGDRSNIEEPTRNEATQRILRDRQSIRKPDRYEANFLQFDE
FT                 PKSYEDAIHGTHAEEWKCAINEELAAHKKNGTWEVITLPPGKKTIGAK"
FT   CDS           2782..4161
FT                 /product="Copia-21_SI-I_1p"
FT                 /translation="MIFKVKQSSSGEIERFKARLCAKGFTQTKGVDFTETF
FT                 SPVVRYDSIRTLLAIATEKNLKMQQFDVKTAFLNGDLSEEIFMDIPEGVQI
FT                 SNIRGKVCKLVKSLYGLKQASRCWNLKFDAFLKDYNFTQSAADQCVYIGSI
FT                 NGSLTYVVLYVDDGLVFSESKESLNSIIRDLSDKFEIKLCDGKMFAGVQID
FT                 RDCKNRTTFIHQSLYAERLLYKFNMAEAKPVSTPIENGFDFNSSDDGNVSN
FT                 FPYHEAVGSLMFLATVSRPDIAFAVNVASRYFNNYSNIHVSLVKRILKYLK
FT                 GTIRKGIVYKSDGSVLELVGFSDADFAADCETRRSTTGYLFQLAGGPITWS
FT                 SQRQKLVTLSTTESEYVAACAAAKECIWLRKLLHDINHKCNSATIIYVDNQ
FT                 SAIRLVHNPEFHCRTKHIDVKHHFIREKFQNNEIEVSYVPSDSQKADLLTK
FT                 AVPKMRFEYLVSFIS"
XX
SQ   Sequence 4197 BP; 1370 A; 783 C; 922 G; 1122 T; 0 other;
     ggttatgggc ccagacatct cgtaattggg gtctgatcgt tctaaagaag aaaagcgtaa        60
     gtttgtcgtt gtgtcgagcg tgctcgtggc aacctaacct aaggtaggaa ggaagcgtaa       120
     cgaacgaccg cgtggtctcg taaagtcttt cacgtctcgg taacaagcca aaagaaacag       180
     tttctttttc gagttgcaag gtttcagaat cgattgcgaa taacctgcaa aaatgacgga       240
     aaacttttat tcgaagaaca taaccaaatt cgacgggaaa aattatcaat cctggaagtt       300
     ccaaatgaag gcagtattag tagcgaatga tctaatggaa atcgtggatg gtacaaaggt       360
     ggaacccgaa gccgttgctg agagagatgc ctggaagaag tcaaatgcaa aggccatgtt       420
     cataatatct acttcgttgg aagaatctca actcgaaacg ttaattacgt gcaatactgc       480
     gactgaaatg tgggctaaat taaggtcagt acacgaacaa acctcagaaa caaataaatt       540
     aatcctcacg caaagattcc atgcatatag aatggaacat aacatgtcga tatcacaaaa       600
     tattgctaaa atagaaaata tggcaagaca tctgaaagat cttggcgaaa caatctcaga       660
     tgtagcaatc atggccaaga tattaggaag cttaccttca aaatatagtt atttagttac       720
     ggcctgggat agtgttgatc cgactcgtca aactcttgaa tatttgcgtg agagattact       780
     taaagaagaa gctcgtttat cctctacaga tgaaatgaca aatgcgttag ctgctgtttc       840
     tttgaaaact aatcagtcaa aatctgaaag taatttgcag aaaaagcctg aaataagcaa       900
     cgcaattaga ggttctacag taaagaaagt cgaatgcttc tattgtcata agttaggcca       960
     catgattaag gactgtcgca acagaaagaa gaaagatcaa gagaaatctg gcaaattgga      1020
     gactgttgca ctcgtagtaa ctcagagcac cgccgataca actacgtcag agtcagtaag      1080
     tgctcactca aaggagatct ccgaaatcct atcgtacgac aaagataata tatggtatgc      1140
     ggacagtgga gcctccaagc atatcagctt tcgaagagaa tggttctcgg aatttcatcc      1200
     ctcgtcagga gaagatatag tattgggtaa cgaagccaaa tgtaaggttc taggatccgg      1260
     gacgattgct gcaaagagat tggtgtcagg aagatggctg gacgtcaagt tggaggatgt      1320
     tctttatgtt cctaatttcg gaaggaactt gatttccgtt ggctattgta ctaagaaaaa      1380
     gttgacagtc acatttcacg atgatgtcgt cacaattagt cgagacggtg agtacattgt      1440
     cggaggtatt aaacaagaaa atcaacttta caggttattt atgaagccga tgctccatga      1500
     agctaacgtc gcgtcattcc aaacgtggca tgaaagatta gggcacctca acaaaaatta      1560
     tatcagcgaa atggcacaaa agggattagt ggcaggcctt gatttgtcaa acaagtcgga      1620
     cttcttctgt gaagattgtc aatatggcaa aatgcatcga aaaccctttc gaaacacgga      1680
     ccgaactcaa acgatgaaga tcggcgacct cattcacagc gatgtatgtg gtccttttca      1740
     agtggattca ctaggaggag ccagattcta cgtcttgttc aaggatgatt tttctaatta      1800
     ccgtgtagtt cattttatca aacacaaggc tgacgtcttc gataaattta aggagtttga      1860
     aaaatcaata cagaatagat ttggtcattc ggtgaagcgt ctgcgtgtgg ataacggaag      1920
     agagtactgc aataaggaga tgtccaatta tctcgtcaaa aagggcattt ctctggaaac      1980
     aacagccccg tactcacctg aacaaaatgg caaatccgaa agagacaatc gtactctcgt      2040
     ggagagtgca agagcgatgc tacacgctaa aaatttgcca atgtttctct gggctgaggc      2100
     cattaatacg gctgtctatg ttctcaatcg cagtgtctgc agcaagacga aagattctac      2160
     gccttatgaa atctggacca acaagaaacc taacttgtct cacgtcagga tctttggaag      2220
     taatgccttt attcatatcc caaaagttca cagacagaaa ctggatccga aggccaggaa      2280
     gttaatgcta gtcggatatc aaggcgaatc gtccaattat cgcctttatg atccgtcaaa      2340
     caaacgaatc accgtcagtc gagatgttat atttaatgaa tgtccttcga gagaaatggc      2400
     atcgtcaaag tcagtttgcc tcgagattgg tctggagaat ctatcaaagg atttgccaac      2460
     acaggacatc ccaaatgaag ttcaagaaaa taatgaacaa aagcagaatc aagaaaacgg      2520
     tgatagaagc aacatcgaag aaccaacacg caacgaagcc acacaacgaa ttctacgaga      2580
     tcgacagtct attcgcaaac ctgatagata cgaggcaaat tttcttcagt ttgacgaacc      2640
     aaagtcgtat gaagatgcta tccatggcac acacgctgag gagtggaaat gtgccattaa      2700
     cgaagaattg gcagcgcata agaagaatgg tacttgggaa gttattactt tgcctccagg      2760
     gaagaaaacc atcggtgcca aatgattttc aaggttaaac agtcatcatc cggagaaatc      2820
     gaacgcttca aggcacgcct ttgtgccaaa ggatttacgc aaacgaaggg cgtagatttt      2880
     actgaaactt tttctccagt cgtccgctat gactcgatta gaactcttct ggccatagca      2940
     acagagaaaa atctcaaaat gcagcaattt gacgtgaaga ccgccttttt gaatggcgat      3000
     ttgagcgagg aaatattcat ggatattcct gagggtgttc agatctcaaa tattagaggt      3060
     aaagtttgta aattagttaa atctttgtac ggattaaaac aagcctctcg ttgttggaat      3120
     ttaaaatttg acgcgtttct taaagattac aactttactc aatctgctgc agatcagtgt      3180
     gtttacattg gttcgattaa tggttctctt acctatgtag ttttgtatgt agatgatgga      3240
     cttgtgttct cagaatcaaa ggaatcatta aactcaatta ttcgagattt atcagataag      3300
     ttcgagatta aattgtgcga cggtaaaatg tttgctggag ttcagattga tcgcgattgt      3360
     aaaaatagaa caacgttcat tcatcagagt ttgtatgctg aaagacttct ttacaaattt      3420
     aatatggctg aggcgaaacc cgtcagtacg ccgatcgaaa atggatttga ctttaactcg      3480
     agtgatgacg gaaacgtctc taattttccc tatcatgaag ctgttggctc gctgatgttt      3540
     ctcgccacgg tcagtcgtcc agatattgcg ttcgcagtaa atgtcgcgag tcgttatttt      3600
     aataattata gcaatattca tgttagtctc gtaaagcgaa ttttaaaata ccttaaaggt      3660
     acgattagaa aaggaatagt ttataaaagc gacgggagtg tcttggaatt agtaggcttt      3720
     tcagatgcag attttgctgc tgactgtgaa accagaagat caactactgg ttatttattc      3780
     caactcgcag gtggtccaat cacttggtca tctcaacggc agaagcttgt aactcttagc      3840
     acgacagaat cagaatacgt cgcagcctgc gccgcagcca aggagtgtat ttggcttcgc      3900
     aaattattgc atgatattaa tcataaatgt aattccgcaa ctataatcta tgtagacaac      3960
     cagagtgcga ttcgattggt gcataaccct gaatttcatt gccgaactaa gcacattgat      4020
     gtgaaacatc attttatccg tgagaaattt caaaacaatg agattgaagt aagttatgtt      4080
     ccgagcgatt cacagaaggc cgatttatta actaaagcgg taccaaaaat gcgtttcgaa      4140
     taccttgtat ctttcataag ttagaatgta cgcgtgaaat cactcaaagg gagggag         4197
//
ID   Copia-21_SI-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   AEAQ01023582;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-21_SI_;
KW   Copia-21_SI-I; Copia-21_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-228
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023582; Positions     383     156.
XX
SQ   Sequence 228 BP; 52 A; 63 C; 35 G; 78 T; 0 other;
     tgttaaaata tgtaatcgaa ctttgtgtat ttcccgcgaa atttattggc gccatctccg        60
     gattcaactg cgtggcttta cgaccaccct ctcctacttc gctttcgctg gctcgtgttc       120
     tttcgcgcgc taagaacagt acttgtaacg acactcatta aaccttttct tgcaatatat       180
     ctcgttcact tttctctcat cgactctcag accatagcta attcaaca                    228
//
ID   Copia-22_AA-I repbase;    DNA;    INV; 4280 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4280
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4280
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 78-78 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           215..4261
FT                 /product="Copia-22_AA-I_1p"
FT                 /translation="MEEEKKVYLFDGANFNNWCFRMEIHLEELDLVECIRS
FT                 EPEEVAEYQVLPTDSADVKRGKEESLQVRRRKDVKCKSVLVRNIADSQLEY
FT                 IKGKRTPRQIWTTLENTFARKGISGQFYLLKKLSAMKFEENGPLQAHLLQF
FT                 ERMVRDLESAGIKLQEQLVVFYLLQTMPSSYGQLVTVLETLSAEQCTLDFV
FT                 KARLLSESVKREHCDDGRSGDSTAFAGKSAKPKLKCFSCGKLGHKRSECPQ
FT                 RRDWDSAKPKKKENKFEKKEKAHVSESEVTFISSCVDRNDKSCDESGFKWI
FT                 LDSGASDHMICSSEYLRDVQKLDEPVMIKVASGEVLRSHHRGKVDIVARVG
FT                 KRRMKCVVDNVLFVPGLNYNLFSIRRVGQLGMEVNFSKNSAVIKRDGEVVC
FT                 TGTRSDRLYELNVDVKKAVKSEVLVTQKAIESAELWHRRFGHIGKSGLVKL
FT                 IREDMVKGLTLKREAVNSSSGGVCGPCVEGKQTRKPFQDMALPRSSRPLEL
FT                 VHSDVCGAMSPASWNGKRYFVTFTDDFTHFCAAYILSTKDEVFDCFKTYVA
FT                 MAEAHFDTSVSRLRCDNGGEYVGKAFADFCRTKGIQVEFTVPYTPQQNGVS
FT                 ERFNRTILDKARAMIADSGLNRNMWNEAVLAAVFLINRSPTAALTSNKTPY
FT                 ELWYGHKPDVSKIRIFGSKAFSLIPKEKRGKLDSRSKVSYFVGYGGGGYRL
FT                 WDGKRIFIARDVVVEETALKQRNIECESVVTNDVDQITGGGRLLGPVSSRG
FT                 VADSEEVHRDPLNSGAGPASDPSVEADSDGEEFDEADDRSFSEVEEGNSGS
FT                 AEAGLRRSHRVRKPPEKLNDYLCIAYALNAESFVENVPDTIEELRKLEDWP
FT                 EWKVAIDEELKSLADNNTWQLVDLPAGRRPIDCKWVFRLKFDPDGSVQKRK
FT                 ARLVAKGFTQRFGFDFSETYAPVVKMSTVRSMLALANQFDLEIHQMDVTSA
FT                 FLNGILTEDIFMRQPKGFEEGDKVCRLNKSIYGLKQASKAWNDRFNEFISR
FT                 CGFRRCEEDSCLYVRVSKSGPVYLLLYVDDVLIIAKNLNEVKTVKRMLRME
FT                 FKMQDLGEARMFLGLRIDRDRPNGIIKLSQPKYVDSVLRRFGMESCKPSST
FT                 PMEPSLQLKKKELSQNLGNPYRELIGCLTYLMVTSRPDLSAAVSYFSQFQC
FT                 NPGEDHWKYAKRMLRYLKGTPEYGLLYKRTDPASRQIVGYADSNWATDIND
FT                 RHSVSGYLIQVYGATTAWSTRKQRTVALSSTEAECFALAECICEVLWICKL
FT                 FTELDIRERQSAVIFEDNQSSIAIAESDGPSRKLKHTEVKLHFIKECVQDG
FT                 KVSLCYIPTAEQPADILTKGLPLAPFIKHRDFMGVQA"
XX
SQ   Sequence 4280 BP; 1094 A; 910 C; 1259 G; 1016 T; 1 other;
     ggttatgggc ccagcgcagc ccgagcccca ttccgagagt gcacacgttt gagtacgtcg        60
     cgaaaacgtt tttcgatcgt tgagaagaaa aagtgttctc cgccacagcg catggcaaaa       120
     agttgccatt gttcggtttg tgtggtagtc tatcgcgagt ttttcgagca agttttttcg       180
     ttgctgttgg taccgccggt cgtagtgcgt tgaaatggag gaagaaaaga aagtttatct       240
     tttcgacgga gccaatttca acaattggtg tttccgaatg gaaatccacc tggaagagct       300
     ggacctcgtc gagtgtatcc ggtcggagcc ggaggaggtg gctgaatatc aggtgttacc       360
     gaccgacagt gccgatgtca agcgcggaaa ggaggaaagc ctgcaagtga ggaggaggaa       420
     ggacgtaaaa tgcaagtcgg tgctggtccg gaatattgcg gattcgcaac ttgaatacat       480
     caagggtaag cgaacgccgc ggcagatctg gacgacgctt gaaaacacgt tcgcccgcaa       540
     gggcatctcc gggcagtttt atctcctgaa aaagctgtcg gcgatgaagt ttgaggaaaa       600
     tggaccactt caggcgcacc tgctccagtt cgagcggatg gtgcgggatt tggaatcagc       660
     cggaatcaaa ttgcaggagc agttggtggt gttttacctg ctgcagacga tgccgtcgtc       720
     gtacgggcag ctcgttaccg tgttagaaac actttcggcg gagcagtgta ctcttgattt       780
     cgttaaagcc cgtctgttaa gtgaaagtgt gaagcgggag cattgcgatg atggaagaag       840
     cggtgattcm acggcatttg ccggtaaaag tgctaaaccg aaactcaagt gtttttcatg       900
     cgggaagttg gggcacaaac ggtcggagtg tccccagcgt cgcgattggg acagtgcaaa       960
     gccaaagaaa aaggaaaaca agtttgagaa gaaagaaaaa gcgcacgtca gtgaatcgga      1020
     ggttacgttc atcagcagtt gtgttgacag aaatgataaa tcatgtgatg aaagtggatt      1080
     taagtggatt ttggactccg gcgcgtccga ccatatgatt tgctcgagtg agtatctccg      1140
     tgacgtgcag aagcttgatg aaccagtgat gataaaggtt gcatccggtg aagttcttcg      1200
     aagccaccat aggggaaagg tggatattgt ggcccgcgtc gggaagcgtc gaatgaagtg      1260
     cgtcgtcgac aatgtgttgt tcgttcccgg attgaactat aacctcttct cgatccgtcg      1320
     cgttggacag cttggaatgg aagtgaattt ttccaagaac agtgcggtga tcaaacgaga      1380
     tggcgaggtt gtgtgcacgg gtacgcggtc ggaccgactc tatgaactga acgtcgacgt      1440
     taagaaagca gtgaaatccg aggtgctagt gacgcagaag gcaatcgaaa gtgccgagct      1500
     gtggcacaga agatttggcc acattgggaa gagtggctta gtgaagttga tccgtgaaga      1560
     catggtgaaa ggactaacgc tgaagaggga agctgtgaac agttccagtg gcggcgtgtg      1620
     cggtccgtgc gtggaaggca aacagacacg caaacccttc caggatatgg cacttccccg      1680
     tagctctagg cctctcgagt tggtgcatag cgatgtttgc ggtgcgatgt ccccggcgtc      1740
     atggaacggt aagcgctatt tcgttacttt tacagatgat ttcactcact tttgtgcggc      1800
     gtacatcctg agcacgaaag atgaggtgtt tgattgcttt aaaacgtatg tagcgatggc      1860
     agaggcccac ttcgatacca gtgttagccg cttgcgctgc gacaacggtg gagagtatgt      1920
     gggcaaagca tttgccgatt tctgccgaac caaaggaata caggtagagt tcaccgtccc      1980
     atataccccg cagcagaacg gggtcagtga acggttcaat cgcaccattc tcgacaaggc      2040
     tagagcaatg atagcggact ccggactgaa tcggaacatg tggaacgagg ctgtgttggc      2100
     ggccgtcttt ctcattaatc ggagccctac ggcagcgcta acctcaaata agacaccgta      2160
     tgagctttgg tacgggcata agccggacgt atcgaagatt cggattttcg gaagcaaggc      2220
     gttcagtcta atcccgaagg agaagcgagg caaactggac tctcgcagca aggtcagcta      2280
     tttcgttgga tacggcggtg gtgggtaccg tttgtgggac ggtaagcgga tcttcatagc      2340
     tcgggatgtt gtggttgagg aaacagcgct caagcaacgg aatatcgaat gcgagtcagt      2400
     ggtgacgaac gacgtcgacc agatcacagg cggtggtcgt ctgctaggac cagtttcgtc      2460
     tagaggcgta gcagattctg aagaagtcca tcgtgatccg ttgaattcag gagccggtcc      2520
     cgcttctgat cccagcgtcg aagcagattc ggatggtgaa gagtttgatg aagcggatga      2580
     caggtcgttt agtgaagttg aggaggggaa cagcggcagt gcggaagcag gtctgcgccg      2640
     cagtcatcga gttcggaagc ctccagagaa gctgaacgac tacttgtgca tcgcgtatgc      2700
     gcttaatgct gaaagtttcg tcgaaaatgt ccctgatacc atcgaagagc tgcggaaact      2760
     ggaggattgg ccggagtgga aggttgccat agatgaggag ctgaaatcat tggctgataa      2820
     caacacttgg caactagtgg acttgccagc cgggcgtagg ccgattgatt gcaaatgggt      2880
     atttcgcctc aagtttgatc cggatggttc tgtccagaag cggaaggcac gattagtcgc      2940
     caaaggcttc actcagcgtt ttggttttga cttttcggaa acgtatgccc ctgtcgtcaa      3000
     aatgtcaact gttcgatcaa tgctcgctct tgcaaatcag ttcgaccttg aaatccacca      3060
     aatggatgtc acgtccgcct tccttaatgg aatcctcact gaggacatct ttatgcgtca      3120
     accaaaggga tttgaggagg gggataaagt atgcagactc aacaaatcca tttatggatt      3180
     gaagcaggcg tccaaagcgt ggaacgaccg tttcaatgag ttcatttcac gctgtggttt      3240
     ccgtcgatgc gaggaggata gctgtctcta cgttcgggta agcaagtcgg gtccagtgta      3300
     cctgttgctt tacgtggacg atgtcctgat catcgcgaaa aatttgaacg aagtcaagac      3360
     agtgaagcga atgctgagga tggaattcaa gatgcaggac cttggtgagg cccgaatgtt      3420
     cctgggcctt cgaatcgata gagatcgtcc gaacggtata ataaagttga gtcagccgaa      3480
     gtacgtggat tctgtgctgc gtcgctttgg aatggagtcg tgtaagccgt catcgacgcc      3540
     gatggagcca agcttgcaac tgaagaaaaa ggaactcagc cagaacttgg gaaatccgta      3600
     tagggaattg atcggctgct taacatattt gatggtgact tcccgcccgg acttaagcgc      3660
     agccgtatcg tactttagcc agttccagtg caaccccgga gaagatcact ggaaatatgc      3720
     gaaaagaatg ctccgctact taaagggaac accggagtat ggcttgttgt acaagagaac      3780
     ggatcctgct agtcgtcaaa tagtggggta cgctgattca aattgggcca ctgacataaa      3840
     tgatcgacat tctgtctccg gatacctgat ccaggtctat ggtgctacaa cagcttggag      3900
     taccaggaag cagcggacgg tggcgctttc ctcgaccgag gccgagtgct ttgcgctggc      3960
     agaatgtatc tgcgaagttt tatggatttg taagctgttt acggagttgg acattcgtga      4020
     gcgtcagtct gcggttattt ttgaagacaa ccagtcgtca atcgccattg ccgagtccga      4080
     tggtccatcc aggaaactca agcacactga ggtcaaatta catttcatca aggagtgtgt      4140
     gcaagacggt aaagtaagtt tgtgctatat cccaacagct gaacaacctg ctgacatatt      4200
     gacaaaaggt cttcctttgg cgcccttcat caagcatcga gacttcatgg gagttcaagc      4260
     gtgatttgtt tgaggagggg                                                  4280
//
ID   Copia-22_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_AA_;
KW   Copia-22_AA-I; Copia-22_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 173 BP; 47 A; 38 C; 26 G; 62 T; 0 other;
     tgtgaagagc aaactattca ctgggtaaaa cccatgaaaa atattcgtag ttcaacttta        60
     ccgtgtatct tttgacaaat aaaattcatt ctgttctttt atactcgacc gtaacacacg       120
     tgtttgtttt tactctcgtc gcgtatcaca ttccacttgg tgctccgctt ata              173
//
ID   Copia-22_CQ-I repbase;    DNA;    INV; 4791 BP.
XX
AC   AAWU01004224;
XX
DT   26-DEC-2010 (Rel. 16.01, Created)
DT   26-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_CQ_;
KW   Copia-22_CQ-LTR; Copia-22_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4791
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 359-359 (2011).
XX
DR   GenBank; AAWU01004224; Positions    5110    9900.
XX
CC   Positions [2132-2659] - Integrase core
CC   'CCGAG' target site duplication
CC   LTRs are 100% similar to each other.
CC   Contains a SINE insertion (masked).
XX
FH   Key           Location/Qualifiers
FT   CDS           1532..4774
FT                 /product="Copia-22_CQ-I_1p"
FT                 /translation="MVDAEQAVRCSVSGASSLWYVDSGASQHMTCNKNFFT
FT                 ELTEDVQIGITLANGNTTHSQGMGRGLLRCVDDEGRERQIQVQNVLYVPEL
FT                 DGSLLSVSTIVNNHFVVSFTARGCKVLDESGAVAAVADLVGGMYVLKTNEK
FT                 SMVSATARHTEFCPHTWHRRFGHRDIDVIDQIKRNDLATHMKVIDCGLQSV
FT                 CECCLECKLSRKSFPKVAENRAKSVLDLVHTDVCGPFQNVTPGGKRYFMTI
FT                 IDDFTRYTIVYLLANKSEVVNKIIEFVRLVENQMGEKPRVIRSDNGGEYAT
FT                 KALEEFYAAEGIKAEYTCPYSPQQNGVAERKNRYLQEMALCMLHDAGLPKL
FT                 YWGEAVMTATFLQNRLPSRSIGCSPYEKLFNKKPAVKDLKVFGSEAFVYIP
FT                 AERRRKFENRARKLIFIGYCTQNKAYRFLDRKTGRIIVSRDAQFLELGAEI
FT                 GEESASDKTSTNDVEVVIGEKVEKVREELQAPEDLDVSDDSFYDPEEDASE
FT                 EAVEESAASGGSAEPAGPSAAGEPAASAQNGADGNRHSQRSNFGVPPQHLN
FT                 DFVVGLAAQCSDEPGTYREAIAGPEKKQWLAAMKEELRSLEENNTWSLVTP
FT                 PAGCEPIGSRWVFKKKEDAEGKVLRFKARLVAQGFSQKFGRDFDQVFAPVA
FT                 MQSTFRVLLSIASQKKMDVYHVDVKTAYLYGTLEEEIFMRQPPGFVVPGQE
FT                 KCVCKLNRSIYGLKQAARVWNSTIKDFLIAIDFVQSSSDACLYMKKLSDRE
FT                 WMYLLIYVDDMVIVCREKNQMLRVEEELKKRFRITSLGPVHLFLGIAVNQD
FT                 ADGVYSINQSSFIRKIAKQYGLDESKKSKIPMDTGYYKFAEKSEVLPNNTE
FT                 YHSLVRSLLYVSTNTRPDIAAGVSILSRKIQSPSQADWTELKRVVRYLVGT
FT                 ADHRLQLGASEADRMSALEGFCDADWASDTSDRKSNSGFVFRFGEATISWA
FT                 SRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNK
FT                 SCLDFVALERQNRRSKHIDTKFHYIKDAATSGQIVLRYCATTDMLADIMTK
FT                 PLGAVQVAKFVGMLGLKAGGSGHR"
XX
SQ   Sequence 4791 BP; 1105 A; 1138 C; 1314 G; 934 T; 300 other;
     ggttattggc ccggaaagtt ttgagtatcg tcgggaagtt ttgtgcgctg cggagttcgc        60
     tcccgaggaa tcttcgtctc ccgtgaccgc gtggtcgctg cctgttcctg cgatggcgga       120
     ggctgtgaag ttcaacgttg ccaagctcgg caacggcaat tacccgtcct ggaagttccg       180
     gatggagatg ctgctcgtcc gcgaggagct gttttacgtc atctgcgatc cgcgggacga       240
     tcccgtcacg gaagcgtgga caaaggacga ccggaaggcc cgcgcaaccc taggcctgtg       300
     cgtggaggag agtcaatttg ggctcatcaa gggcaaggcc accgcgaagg agatgtggga       360
     aagtcttcaa gagtaccacg agaagcactc cgtttcgtcg cgcgtgttgc tgctgaagaa       420
     gctgtgcagc aagaatttgc aagaaaatgg cgacatggaa gcacacctgc aggacattga       480
     ggttatgttc gaccgcctgc aaggtgccaa tctcaagctg gacaaggagt tgaaggtcgc       540
     gctgctgctg cgaacactgc cggactccta caacggtctt gtcgtggccc tggagagccg       600
     cccagatgcc gatctgaccc tggactttgt caaatcccgg ctgctcgatg agcaccagaa       660
     gcggctggag cgggggaaca ttgccggcgg cagtaagctg ctgaagacgg ttgcatccaa       720
     gcccggatag agcctcaatc gcgcagatga cgaggaaatc ttggctgatt tgatgcggcc       780
     ggattggcgg ctcctaagaa cttaggagct gcaggttggg acacaaactg gctgtgtcct       840
     tcgaagattt taagatttgc tgattcttgg tgagagcttt ccatcattat ttgctaaatg       900
     attatattcc cttatattat tatactataa attcaatagc cctcctaccc cttcctcact       960
     ttcccattcc ttaatcccat tttgcccaat accacttcct ccctaaaaat ataattatct      1020
     gccaaatttx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1080
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1140
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1200
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1260
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1320
     xxxxxxxxxg acggttgcat ccaagcccgg agagaagaca tgtttctttt gtaagaaacc      1380
     tggccacttc cgtaaaaact gccggaagta ccaggcgagc ctgaagggcg actccggcga      1440
     gaccagacac cagtacgcac caagggcgaa gaaggcggcg gaagcatctc cgttgctgtt      1500
     ttggacgaag gtgggaaccg catcggcgag gatggtggat gctgagcagg cggtacgctg      1560
     ctcggtgagc ggcgcttctt cgctgtggta cgtggacagt ggtgcatccc agcacatgac      1620
     ctgcaacaaa aacttcttca ctgagctgac ggaggacgtg cagatcggaa tcaccttggc      1680
     gaacggcaac acaactcatt cgcaaggtat gggacgtggc ctgctacgct gcgttgacga      1740
     cgaaggacga gaaaggcaga tccaagtaca aaacgttttg tatgtacccg aactcgatgg      1800
     tagtctgctc tctgtaagca cgatcgtaaa caatcatttt gttgtgtcct tcaccgcgcg      1860
     cggctgcaaa gtgctcgacg aaagtggcgc tgtggctgct gtcgctgacc tggtcggcgg      1920
     aatgtacgtg ctcaagacga acgagaaatc gatggtgtcg gccaccgccc ggcacacgga      1980
     gttctgtccc cacacctggc atcgtcggtt tggtcaccgc gacatcgacg tcatcgacca      2040
     gatcaagagg aacgacctgg caacacacat gaaagtgatc gactgtgggc tgcaaagtgt      2100
     gtgtgagtgc tgcctcgagt gcaagttgtc ccgcaaatcg ttccccaaag tggctgaaaa      2160
     ccgtgcaaaa agtgtgctgg acctggtgca cacggacgtt tgtggaccgt tccaaaacgt      2220
     cacgccggga ggtaaaagat attttatgac gataattgac gactttaccc gctacaccat      2280
     tgtttacctc ctagcgaaca aatcggaagt tgtcaacaaa atcatcgagt tcgtccgcct      2340
     cgtggagaac cagatggggg aaaagccacg ggtgatacgg tcggacaacg gcggcgaata      2400
     cgcgaccaag gcgctggagg agttctacgc ggcagagggg atcaaagccg agtacacctg      2460
     tccctactcc ccgcagcaga acggtgtcgc tgagcgcaag aaccgttacc tccaggagat      2520
     ggcgctttgt atgctgcacg acgcaggctt accgaagctg tactggggcg aggccgtgat      2580
     gaccgcaacg ttcctgcaga accgactccc ttctcgatcg attggctgct caccgtacga      2640
     aaagctcttc aacaagaagc ccgcggtgaa ggacctgaaa gtgttcggct cggaagcgtt      2700
     tgtttacatt ccggccgaaa ggaggagaaa gttcgagaac agggcgcgga agctgatctt      2760
     catcggttac tgcacgcaga acaaggccta ccgtttcctc gaccgtaaga ccggtcggat      2820
     catcgtcagc cgggacgcgc agttcctgga gttgggcgct gaaatcggag aagaaagtgc      2880
     aagtgacaaa acgtcaacaa atgacgtgga agttgtgatc ggagaaaaag ttgaaaaagt      2940
     gcgcgaagag cttcaagctc cggaagacct agacgtctcg gatgatagtt tctacgatcc      3000
     ggaggaagac gcaagtgaag aagctgttga ggaatcggcg gcatctggcg gttctgcaga      3060
     acccgctgga ccaagtgctg ctggagagcc ggcggcgtcg gcgcagaacg gtgctgatgg      3120
     taatcggcat tcgcaacgaa gcaattttgg tgtcccgccg cagcatctca acgatttcgt      3180
     ggtcggactg gccgcgcagt gcagcgatga acccggaacc taccgtgaag ccatcgctgg      3240
     ccccgagaag aaacagtggt tggccgccat gaaggaagaa ctccgatcgc tcgaagagaa      3300
     caacacctgg tcgctcgtga cgcccccagc cggttgcgaa ccgatcggct ctcgatgggt      3360
     gttcaagaag aaggaagacg cggaagggaa agtgttgcgc ttcaaagcaa gattagtggc      3420
     acaagggttt tcccaaaagt tcggtcgcga cttcgatcaa gtgtttgcgc cagtggcgat      3480
     gcaatccaca tttcgtgttt tgctctcgat cgccagccag aagaagatgg acgtgtacca      3540
     tgttgatgtg aaaacggcgt atttgtatgg taccctcgaa gaagaaatct ttatgcgaca      3600
     accccctggt tttgttgtcc ctggccaaga aaagtgtgtg tgcaagctca atcgaagtat      3660
     ttacggcttg aaacaggccg cgcgagtgtg gaacagcacc atcaaggact ttctgattgc      3720
     tatcgatttt gtgcaatcgt cgtccgatgc ttgcttgtac atgaagaagt tgagcgatcg      3780
     tgagtggatg taccttttga tctatgtcga tgacatggtg attgtgtgcc gcgagaagaa      3840
     ccagatgcta cgcgtcgagg aggagctcaa gaaacggttc cggatcacat ccctggggcc      3900
     ggtgcatctc tttctcggaa tcgctgtgaa ccaggacgcc gacggcgtgt actcgatcaa      3960
     ccaatcgtct ttcatccgta agattgcaaa acagtacggg cttgacgagt cgaagaagtc      4020
     gaaaattccg atggacaccg gctactacaa gtttgccgag aagtcggaag tgctgccgaa      4080
     caacaccgag taccacagcc tggtcagatc gctgctgtac gtgtccacaa acaccagacc      4140
     ggacatcgca gcgggcgtga gcatcctgag ccggaagatc cagagtccgt cacaggcgga      4200
     ttggactgag ctgaaaaggg tagtgcgtta cctcgtcgga acagcagacc atcgtctgca      4260
     actcggagca tcagaagcag accggatgtc ggcgctggaa ggtttttgcg acgcagattg      4320
     ggccagtgac acgtccgatc gaaagtcgaa cagcggattt gtgtttcgat tcggagaagc      4380
     gacgatcagc tgggctagcc gaaagcaaac ctgcgtatca acgtcaacga tggaggcgga      4440
     atacgtggcc ctggcggaag cagtccaaga ggtcgtgtgg ctacggcgtc tgctggcaga      4500
     gctcggcgag aagcagcaaa caccaacaac aatcttcgaa gacaacaaga gctgcctgga      4560
     ctttgtcgcg ctggagcggc agaatcgcag atcgaagcat atcgacacaa agttccacta      4620
     catcaaggac gctgctactt ctggtcaaat tgtcctgcgc tactgcgcca ccaccgacat      4680
     gctggcggac atcatgacca aaccgcttgg agctgttcaa gttgcgaagt tcgtcgggat      4740
     gctgggactc aaggctggag gatctggcca ccgctagaca tcgaggagga g               4791
//
ID   Copia-22_CQ-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   AAWU01004224;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_CQ_;
KW   Copia-22_CQ-I; Copia-22_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 360-360 (2011).
XX
DR   GenBank; AAWU01004224; Positions    4877    5109.
XX
SQ   Sequence 233 BP; 60 A; 61 C; 48 G; 64 T; 0 other;
     tgttggccgt acggtgcgaa gcccactggg cagacgcgct gtcaagcgtt ggcagcagtt        60
     gctgtcacct gcgagtgacg tttattgaca ttacacattt ccgtttttta cactcgatca       120
     ttcgcacatt agactttgta aaacctagac gctaaataca taaaggtaaa actgtgattc       180
     cccgatttac tttaacatca cgcgactatt ccactgctga accgctgcca aca              233
//
ID   Copia-22_NVi-I repbase;    DNA;    INV; 4182 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   internal portion; Copia-22_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4182
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(7), 1512-1512 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(341..829,763..4152)
FT                 /product="Copia-22_NVi-I_1p"
FT                 /translation="MNYIYCSITNEQLEFVGEEDTALKIMNQFDKMYLKES
FT                 TALQICIRNKIDRMKLKDYEEXSTFFIEFEKIINELKSAGAKVNEREKLDY
FT                 MLKTLPESLSYVGDLIDSMQESTCEFLKNKIKMWETRSPNDSGNKKPNVFK
FT                 AERKDLKCFGCGKKGHLRRACTNPKKRLKVFWLRKERSSKESVYKSVKRSQ
FT                 WRNAVDRRCTATARQRLWQHGRGYGQRGRGYGQRGRGRGWQPRADGTSQHD
FT                 ARYTYNEGYQEDGTGTFLTQVEKKNDRESETVVYNCDRGKIEWILDSGCSD
FT                 HIINNDLYFSESIILKKPINVKVGDGRILKGTKVGKIITYFMINNKRIKIT
FT                 INNVFYVKEMDKNLISYAKVTDKNKIISIGNVSKIYNKNNNLIGIAYKENG
FT                 LYKINSYVEKLETYANNVEKITQKEKFHRILGHVNFNYLNTMCKEKLVEGM
FT                 PKSFENVMLKCGTCIQNKMHNLPFQNNRSGANGILELVHTDLNGPHKNEGF
FT                 DGSKYFLTFIDDFSKCALVYTLKSKDEVYNYFLDYINKVENLTGKKIKRLR
FT                 CDNGREYMNKNMFNLCSEKGIIVEPCPPYVHELNGTAERYNRTIMNSARCL
FT                 LYDSKLNIKYWPEIIKAAAYLKNRTITNTSQNKTPFEIFFGKKPNISNLKL
FT                 YGSKVFVRVPEIKRQSKWDRKADIGILVGYESVGYRVLVNGKIIVTRHVDF
FT                 IENENLIGFKGDDESDDESDISINENSESNEIEENVVNENKKERKPSNKSD
FT                 EKIDDQEIELRRSEREKKKPDRYGQSDSYYIYVNIVSADSPKTYEEALQGN
FT                 DCDLWKEAMNREINCLNKNKTWQLVEKPKDKKILDLKWVFTNKSDNHKKAR
FT                 LVVRGFQQREVLEDLYSPVAKIQTLKLLLSYCCENGLMIIQMDVETAFLNG
FT                 KIKSEVFVKQPLGYSDKTEKVYKLEKALYGLRESPRAWYECFDKYMQKLEF
FT                 KRSVSDYCLYTKCENSETIYLILHVDDLLICGKTMRKINEIKTKLSQKFSM
FT                 KDLGEVKTYLGININYDYKNCKMTMDQSNYIESLARQYNIENSKLFKTPME
FT                 QNLSLESAQTASSDIKYRNLIGALLYISSGTRLDVSYSVNYLSRFQNSYNE
FT                 THYKYALRVLKYLYLTKDLKLTYKKNENAEVMDSFVDADWAGDKSDRKSTT
FT                 GFIIRLYGNVIYWKVRKQGSVTKSSTAAEYVALSEAVSEIKVVKNLLKDFS
FT                 INLEKPIKIYEDNSGAIAIAKFGNMTKNSKYIEVHYHFVNECYEKKEIEIV
FT                 KVDSENNIADILTKALGRNKFENFRMNLKIV*"
XX
SQ   Sequence 4182 BP; 1776 A; 455 C; 831 G; 1116 T; 4 other;
     tggtagcaaa gtgatggttg aaatgttagt gaggttatgt acccacgtgt tgctggtagt        60
     aaagtgaaaa aagaaaattg tgagaagctt gaaataaata cagtgaagtt agagcagcta       120
     ataaaattac agattaagaa aatctggata ttaaaaaaat atatttttga aaataaaagt       180
     gaaactacga gagacagaaa aatgtcgaaa actgatgatt taagatgtca tatatttgac       240
     ggtaaagtat atttaaaatg aaaaagtgcg atcaaccagc aacaaaagaa aagttacaat       300
     ctgaagacca gactgagtgg aatgagaaga attcaaggca atgaactaca tatattgtag       360
     tataacaaat gaacagttag aattcgttgg agaagaggat acggcattaa aaattatgaa       420
     tcaattcgac aaaatgtatt tgaaagagtc gacagcattg caaatatgca taagaaacaa       480
     aatagacaga atgaaattaa aagattacga agaatsaagy acattcttta tagagtttga       540
     gaaaataata aatgaattga aaagtgcagg tgccaaagta aatgaacgag aaaaattaga       600
     ctacatgtta aaaactctac cggaatcatt aagttatgtt ggagacttaa tagattcaat       660
     gcaagaaagc acgtgtgaat ttcttaaaaa taaaattaaa atgtgggaaa cacgaagccc       720
     gaacgatagc ggcaataaaa agccgaatgt atttaaagct gaaagaaaag acttaaagtg       780
     ttttggctgc ggaaagaaag gtcatctaag gagagcgtgt acaaatccgt gaaaagaagc       840
     caatggagga atgcagtgga caggaggtgc acagcaacag cgaggcagag gttatggcaa       900
     cacggacgag gttatggtca acgcggacga ggttatggtc aacgcggacg aggcagaggc       960
     tggcaaccac gtgcagacgg aacgagtcaa cacgatgcga ggtacacgta taacgaaggt      1020
     tatcaagaag acggaacagg aacattttta acacaggtag aaaagaaaaa tgacagagaa      1080
     agcgaaaccg tagtgtataa ttgcgatagg ggtaaaatcg agtggatttt agatagtgga      1140
     tgttcagacc acattataaa taatgactta tatttttctg aaagtataat tttgaaaaag      1200
     cctattaatg ttaaagtcgg agatggtaga attttaaaag gcactaaagt tggtaaaatt      1260
     ataacttatt ttatgataaa caataagaga attaaaataa cgataaataa tgtattctat      1320
     gtaaaagaga tggataaaaa tttgattagt tatgctaaag taacagataa gaataaaatt      1380
     atatctattg gaaatgtgtc aaagatttat aacaaaaata acaatctgat tggaattgca      1440
     tataaagaaa atggtttata taaaataaat agttatgttg aaaaattaga gacatacgca      1500
     aataatgttg agaaaataac acaaaaagaa aaatttcata gaatcttggg acatgtaaat      1560
     tttaattatc taaatacaat gtgcaaagaa aaattagttg aaggaatgcc aaaaagttty      1620
     gaaaatgtaa tgctaaaatg tggaacgtgc atacaaaata aaatgcataa tttgccattc      1680
     caaaataatc gtagtggtgc aaatggaata ttagagttag ttcacacaga tttaaatggg      1740
     ccacataaaa atgaaggttt tgatggatct aagtatttct tgacttttat agatgatttt      1800
     agtaaatgcg ctttagtata tacgttaaaa tcaaaggatg aagtgtacaa ttatttttta      1860
     gattatataa ataaagtcga aaatttaact ggcaagaaaa ttaaaagatt aaggtgtgat      1920
     aatggtagag aatatatgaa taaaaacatg tttaatttat gtagtgaaaa gggaataata      1980
     gtagaaccat gtccaccgta tgtacacgag ctgaacggaa cagctgagcg ctataatagg      2040
     acaataatga actcagcgag atgtttactt tatgattcga aattaaatat taagtattgg      2100
     ccagaaatta taaaagccgc agcgtattta aaaaatagaa caataacaaa tacaagtcag      2160
     aataaaactc cgtttgaaat attttttggg aaaaagccaa acattagtaa tctgaaatta      2220
     tacgggagta aagtatttgt tagagttcca gaaataaaaa gacaatcaaa atgggataga      2280
     aaagctgaca taggtatact cgtaggctat gaaagcgttg gatacagagt tttggtaaat      2340
     ggaaaaataa tagttacacg acatgtagac tttatcgaaa atgaaaattt aattggattt      2400
     aaaggtgatg atgagagtga tgatgaatcc gacattagta taaatgaaaa ctctgaatca      2460
     aacgaaatcg aagaaaatgt tgtaaatgaa aataagaaag agagaaaacc aagtaataaa      2520
     tcagatgaga aaattgatga tcaagaaatt gaactgcgaa ggtcagaacg cgaaaaaaag      2580
     aaaccggata gatatggtca atccgattcr tattatattt acgtaaacat tgtaagcgca      2640
     gacagcccga aaacttacga agaagcttta cagggaaatg attgtgattt atggaaagag      2700
     gctatgaata gagaaataaa ttgtttaaat aaaaataaaa cttggcaatt agtagaaaag      2760
     ccgaaagata agaaaatttt agatttaaaa tgggtattta caaataaatc tgataatcat      2820
     aaaaaagcga gattagttgt acgaggtttt caacaaagag aagtactgga agacttgtat      2880
     tctccagtag ctaaaattca aacattgaag ttactattgt catattgttg tgaaaacggt      2940
     ttaatgatta tacagatgga tgtcgaaacc gcattcctga atggaaaaat aaaatcagaa      3000
     gtatttgtaa aacaaccttt aggttacagt gataaaaccg aaaaagtgta taaacttgaa      3060
     aaagcgttgt atggactgcg agaaagcccg agagcttggt atgaatgttt cgacaaatat      3120
     atgcaaaaat tagaatttaa aagaagtgta agcgattatt gtttgtacac aaaatgtgag      3180
     aatagcgaaa caatttactt gattctacac gttgatgatc tattgatttg cggaaaaaca      3240
     atgcgaaaaa ttaatgagat taaaaccaaa ttgtcacaaa aattttcaat gaaagactta      3300
     ggcgaagtaa agacttattt aggaataaat attaattatg attataaaaa ttgtaagatg      3360
     acaatggacc aaagtaatta catagagtca ttagctagac aatataatat tgaaaatagt      3420
     aaactattta aaacaccgat ggaacaaaat ttaagtctag aatccgcaca aacagcatca      3480
     agtgatataa aatatagaaa tctcatagga gcattattat atataagctc tggaacaaga      3540
     ctagatgtta gttatagtgt aaattattta agtcgatttc aaaatagcta caatgaaact      3600
     cattataaat atgcgttgag agttctaaaa tatttgtatt tgactaaaga cttaaagtta      3660
     acttataaaa agaatgaaaa tgctgaagtc atggacagtt ttgttgatgc tgattgggca      3720
     ggagataaat ccgataggaa atccacgaca ggatttatta taagattata tggaaatgtt      3780
     atatattgga aagtccgaaa acagggcagt gtgacaaagt cgtcaacagc cgctgagtac      3840
     gtagctttat cagaagctgt aagtgaaatc aaagttgtta aaaatttgct aaaagacttt      3900
     agtataaatt tagaaaaacc aataaaaata tacgaggata actcaggagc catagcaata      3960
     gcaaagtttg gtaacatgac gaaaaactcg aagtacattg aagtacatta tcattttgta      4020
     aatgagtgct acgaaaagaa agaaattgaa attgtaaaag tagactcaga aaataatatt      4080
     gctgatattt taacaaaggc tctgggtaga aataaattcg aaaattttag aatgaattta      4140
     aaaattgttt aaagtttaag tagcataaaa attaaggagg tg                         4182
//
ID   Copia-22_NVi-LTR repbase;    DNA;    INV; 339 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-22_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-339
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(7), 1513-1513 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 339 BP; 108 A; 63 C; 86 G; 82 T; 0 other;
     tgttgagata tgagtaattt atatgctact atccgtacac actatataga gtatgtgagc        60
     aggcatgcgt gcgcgactat agcaagcagg atagactagc gcgcggtagc ggtaactata       120
     ggtatagagt gagagcgtga gtatagagca gagaagcagc tcgaccgccg agagcgtaag       180
     atggctatgt agtgagcccg agcacatgtt gtgcgtatcc gacgatataa gtgtaatctc       240
     caacaatgag tattaaataa aggtacaaca ctaacccgaa gggtccactg gaataatggg       300
     tgatattatt tattgcacca aacccctcat ttattaaca                              339
//
ID   Copia-22_SI-I repbase;    DNA;    INV; 4195 BP.
XX
AC   AEAQ01023538;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_SI_;
KW   Copia-22_SI-LTR; Copia-22_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023538; Positions     181    4375.
XX
CC   Positions [1665-2198] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           432..4172
FT                 /product="Copia-22_SI-I_1p"
FT                 /translation="MCYISSSMEHKQLETLITCETAAEMWAKLSAIHEQKS
FT                 AANKLTLMSRFHELKMAPNDTVVQHVAKIENMASQLRDIGEELSKVTIMSK
FT                 ILSTLPQKFGPLVTAWDSVSEEEQTQSKLIERLIKEEGRLAAMDDATSTTA
FT                 AMTVQQRRGRGTQRGKVDPKSNVDKDSLETKKTFVCHFCKKRGHISRYCYA
FT                 RKNASKDNKNSEKTNVENSADVSAFIVSEAKVIADLLDRDAKRIWLLDSGA
FT                 SKHMTYQREWLHDFHETTNETVSLGDNTLCEVRGYGTVAIKTLINGEWKLG
FT                 KLENVLYVPTLRKNLFSTGACTNKGYSVIFNEKTVEIKDSNILKIRGVQQS
FT                 NNLYRLLIETTTINNANVVEENAFEIWHKRLGHINDKCLRKMIEEKLVTGI
FT                 KPCSYDKCFCENCVLGKQHRLPFKNASKRKSKIGDLIHADVCGPMSERSIG
FT                 GSRYFLILKDDCSGFRKVYFMSHKSDTYDRFKEFIASFKNAFGHDIKSLRA
FT                 DNGTEFTNHMMRDLMKKRGIVFETSAPYTHEQNGTAERDIRTIVECARTML
FT                 IASGLPKCLWAEATNAAVYIINRCIQSQSRDVVPYELWFKRKPDLSHVKIF
FT                 GCVAYAHVPKELNKKWEPKSNKMYLVGYHDESKNYRLFNPLTNKVIVSRDV
FT                 IFNEKARYNKNKEEHDISFDIRLNDSSEKGNDNYEIEHIGDNDEPESIVVG
FT                 TNKSYNLRNRDDLKRPDRYEACIALFDEPTTYKDAINGKNSKEWTIAINEE
FT                 LQAHERNNTWTIVDFPKKEKNIIDYKWVFKQKPIVCEGRETVRFKARLCAK
FT                 GFSQKPGVDFNEIYSPVVRYDSIRLLLAIAAIENLEMRKFDIKTAFINGEV
FT                 EEELYMKIPEGINVSCDKVCRLNKSIYGLKQAARCWNDRFNNFMRKFDFKQ
FT                 SESDRCVYFGKFEKKRIYLALYVDDGLVLADCTVVIDHFFTELKNTFEITE
FT                 SEVNSFVGIEITRNRDKRTIFIHQSSYINRLLKRFNMCEAKSVSVPSDPHV
FT                 ILKIPDCEWEKMDKTPYREAVGGLLFLAMISRPDVSYAVGLVSRFCGKFDL
FT                 NHWNAIKRIFRYLISTENYGILYHGDDTSDIKGFSDADFAGDIETRRSTTG
FT                 YIFRLAGGAITWASKRQATVSLSTTEAEYIAASTAIKECIWVGKILSEIGF
FT                 RCNAKPITLHVDNQSAIRLIKNPEYHSRTKHIDVKFHFIREKYDKRIIDIV
FT                 YVSSQDQFADICTKAIAKEKFEFLRSKIGVVRPLDNK"
XX
SQ   Sequence 4195 BP; 1392 A; 749 C; 968 G; 1086 T; 0 other;
     gttcgcctcg agcgctgtac cagtccacac gttctaataa atacttgata cacattgtta        60
     cttgtgattt ctgcgcctat cccaacaggt tatgggccca ggtcggtgtt tcaagtcgca       120
     aggattagtt ttaacgagca acactgaaac agaaaagtct gtcgcgtaaa tttgcgagtg       180
     aagtgctcga ctctgtgaat ttttttttct ttgtgtcgta tcaagatggc gaactcaagt       240
     acagattcga ttgatcgaat tgatctgaag acggttgtgc gatttgatgg atccaacttt       300
     caagtgtgga agttccaaat gcgagccatt tttacggcca ctggtctttt aaaattagtt       360
     aatggaacgg agacgacacc aggaccgaca gaggcaggtt tgacgcatgg aacgcacgca       420
     acgctagagc gatgtgttac atatcatcgt caatggaaca caagcaactc gagactctga       480
     taacatgtga gacagccgct gaaatgtggg caaagctaag tgccatacat gagcagaaaa       540
     gcgcggcaaa taagctaacg ttgatgtctc gtttccacga gctcaaaatg gcgccgaatg       600
     ataccgtcgt acaacatgtg gcgaagatcg aaaatatggc gagtcaacta cgcgacattg       660
     gcgaggaact atccaaggtg accataatgt cgaaaatctt gagcactctc ccccagaaat       720
     ttggcccttt ggtgacggca tgggatagcg tcagcgagga ggaacagacg cagtcaaagc       780
     taatcgagcg tctcatcaag gaggaaggac gacttgccgc catggatgac gcaacaagca       840
     ccacggctgc catgacagtg cagcagagac gtggcagggg aacgcagcgg ggaaaggtgg       900
     accctaaatc gaacgtcgac aaggacagct tggagacaaa gaagactttc gtatgtcatt       960
     tctgtaaaaa acgcggtcac atttcgagat attgttatgc gagaaagaat gcgtctaaag      1020
     ataataaaaa ttctgaaaaa acgaacgtag aaaattcggc agatgtaagc gcgttcatcg      1080
     tctcggaagc gaaggtcatc gcagatttat tggatcgcga cgctaaaagg atttggcttc      1140
     tcgactcggg tgcttcaaag cacatgacgt atcaacgcga gtggttacac gattttcacg      1200
     agactacgaa cgaaaccgtt agtttaggcg acaacacgct ttgcgaagtt aggggttacg      1260
     gaacagtagc aattaaaacg ttgattaatg gcgagtggaa actcgggaaa ctggaaaatg      1320
     ttctctacgt tccaacctta cgcaaaaatt tgttttccac aggcgcgtgc acgaataaag      1380
     gttattccgt tatatttaat gaaaagaccg tcgagataaa ggactcaaat atcttaaaaa      1440
     ttcgcggggt tcaacaaagt aacaatttat accgtttatt gatagagaca acaacaatta      1500
     ataacgcgaa tgttgtcgag gaaaacgcgt tcgaaatctg gcacaaacgt ctcgggcaca      1560
     ttaatgataa atgtttgcga aaaatgattg aagaaaagct cgtaaccgga ataaagccat      1620
     gcagttacga taaatgtttt tgcgaaaact gtgtgcttgg taagcaacat agactacctt      1680
     tcaaaaacgc gagtaaaaga aaaagtaaaa tcggtgattt gatccacgca gacgtttgtg      1740
     gacctatgtc ggagagatca atcggaggat ctcgttattt tttgattttg aaagacgatt      1800
     gttctggttt ccgtaaagtt tatttcatgt ctcacaaaag cgatacttat gacagattta      1860
     aagaatttat cgcaagtttt aaaaatgcat ttggtcatga tataaaatcc ttgagagctg      1920
     ataacggaac ggaatttaca aatcacatga tgcgtgatct tatgaaaaaa cgcggcatcg      1980
     tctttgaaac ttcagcgccg tatacgcatg aacaaaacgg caccgctgag cgtgacatta      2040
     gaacaattgt tgaatgcgca agaacaatgc taatcgcgag cggattaccg aaatgtttat      2100
     gggctgaggc tacaaacgca gcagtctata taataaaccg atgtattcaa tctcaatcgc      2160
     gcgatgtggt tccttacgaa ctatggttta aaaggaagcc tgatctttct catgtaaaga      2220
     tatttggatg cgtcgcatac gctcatgttc ctaaagaact taacaaaaag tgggagccga      2280
     aatcaaataa aatgtattta gtcggatatc acgatgaatc caagaattat agattgttta      2340
     atccacttac caataaagta atagtgtcac gtgatgtaat ttttaatgaa aaggctcgat      2400
     ataataaaaa taaagaggaa catgatattt ccttcgatat tcgtttaaac gattcttctg      2460
     aaaaagggaa tgataattat gagattgaac acattggaga taatgatgaa ccggaatcga      2520
     tcgttgtagg aacgaataaa agttataatt tgcgtaatcg cgatgattta aagcgaccgg      2580
     atcgatatga agcatgtatt gcgttgtttg atgaaccaac gacatataaa gacgcgataa      2640
     atggtaaaaa ttcaaaagaa tggactattg cgattaacga ggagcttcag gctcacgagc      2700
     gaaacaacac gtggaccatt gttgattttc caaaaaagga aaagaacatt atagactata      2760
     aatgggtgtt caaacaaaaa cccatagtgt gcgaaggtcg tgaaacggtc cgattcaaag      2820
     cacgactgtg tgccaaaggt ttctcacaaa aaccgggcgt tgattttaat gaaatatatt      2880
     caccggtagt aagatatgac tctatacgtt tgttgcttgc tattgctgct atcgaaaact      2940
     tagaaatgcg aaaatttgac ataaagacgg cgttcatcaa cggtgaagtc gaagaggaat      3000
     tatatatgaa aatccctgaa ggcataaatg taagttgcga taaagtgtgt cgtttaaata      3060
     aatcaatata cgggttaaag caagctgcaa ggtgttggaa tgatcgattt aacaatttca      3120
     tgagaaaatt cgatttcaaa caaagcgagt ctgatagatg cgtttatttc ggtaaatttg      3180
     aaaagaaaag gatttattta gcgctatatg tcgatgacgg actcgtgtta gcagattgta      3240
     ctgtcgtgat cgatcatttc ttcactgaat taaagaacac attcgaaatt accgaaagtg      3300
     aggtaaatag ttttgtcggt atcgaaataa cgcgaaatcg cgataagcgg acgattttta      3360
     tacatcaaag ctcatacata aatagattgc tgaaacgttt caacatgtgt gaagcgaaga      3420
     gtgtgtcagt accgtccgac ccacatgtga tcctaaagat ccctgactgt gagtgggaga      3480
     aaatggacaa gaccccatac cgagaggctg taggaggttt attgttcctg gcgatgattt      3540
     cgcgccctga tgtttcgtat gcggtaggac tggtaagccg tttttgtggc aaattcgatt      3600
     taaatcactg gaatgcgata aagcgaatat ttagatactt aataagtacc gagaattatg      3660
     gaatattata tcacggtgac gacacttctg atattaaagg tttctcagac gcagattttg      3720
     cgggcgatat agagacgcgg cgttcaacca caggttatat ttttcgactt gcaggcggag      3780
     caattacttg ggcgtcaaaa cgccaagcga cagtaagcct gagtacgact gaggcagaat      3840
     acatagctgc gagcaccgcc ataaaagaat gtatctgggt aggaaagatt ctttctgaaa      3900
     ttggattcag atgtaatgcg aaaccaatta ccctgcatgt tgataatcag agtgcaatta      3960
     ggctaataaa gaacccggaa tatcacagcc ggacgaaaca cattgatgta aaatttcatt      4020
     tcatacgcga aaaatacgat aaacgaataa tagacattgt atatgtatct tcgcaggatc      4080
     aattcgcgga catatgtacg aaagccattg cgaaagaaaa gtttgaattt ttaaggtcaa      4140
     aaattggcgt tgtaagacca ttagacaata agtaataaca cttggaaagt gggag           4195
//
ID   Copia-22_SI-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   AEAQ01023538;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-22_SI_;
KW   Copia-22_SI-I; Copia-22_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-161
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023538; Positions      20     180.
XX
SQ   Sequence 161 BP; 37 A; 33 C; 30 G; 61 T; 0 other;
     tgttagagat aacctttttt tgttcctcgt gttatatact ccacattata tatgtatgta        60
     tattgggaga ctctcttttg tattgctaca cgtggctctg gccaataaac actttttttc       120
     ttttcaatag cgttgagcct gagaaccgcg acgcgcagtc a                           161
//
ID   Copia-23_AA-I repbase;    DNA;    INV; 3889 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 24.01, Created)
DT   18-JAN-2019 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3889
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3889
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sampled sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..649
FT                 /product="Copia-23_AA-I_1p"
FT                 /translation="MGTTAKDVTYNIPLLRGSGADFQNWSYRARLFLEAKG
FT                 VADVLTRTAPTGEAEKAKFEEMDRISKALLVSCLSDECLEIVREKTTTKEM
FT                 WTSLESAYAKKSVASQTIVRKQLARLRMKEGADMRTNLLEFDGLVRKLKTA
FT                 GATLAESDLVSQLFLTLPDSFDPLVTALENVAEEDLNLDLVKQRLLAEERK
FT                 RSDRQGDSVEDKSAAFTSDTKKKFQ"
FT   CDS           907..3879
FT                 /product="Copia-23_AA-I_2p"
FT                 /translation="MLAEQIGEINATSNKGVHFNLKKVLYVPELRENLMSV
FT                 RKMASAGIDVLFSGSVAVLKKNGKLLATGHLRGNLYELELLLEEVKVNHCE
FT                 VAIGNLWHRRLGHIGQRGLETMARKGMLKGMDEKASQIDFCDACVQAKQCR
FT                 EPFKGTRVRTSRPLERIHSDVCGPIDPPAWDGSRYIVSFIDDHTHFSMIYL
FT                 LKRKSGVFEKFQDYEAKVTAMMGKSISRITSDQGREYCSTNQLQYYRTKGI
FT                 QLETTVAYTPQQNGVAERFNRTLVEKIRSVLIQSKVPKRLWSEAALACVYL
FT                 MNRSPTSALPSGVTPAELWFGVRPDLEKLRVFGCKSFVWIPKQQRRKLDAK
FT                 SKEMVMVGYAPNGYRMWDPVARHVTIARDVKFDESCFPYAVMSQEDDVPLV
FT                 VHFPLEQEGENNQLATIDEIDQANEEKDVNDEDSIEALENALPSPTERREI
FT                 PRELSSRSSGRERRLPGKLFDYFTGYRALSGESISADIPESFDELTEHADR
FT                 AMWMAAVRDELRSMEENKVWRLSSCPQGIRPLKSKWVFRLKDDAAGNAFIH
FT                 KARLVVKGFLQKAGVDYEETFAPVARLATIRTVLAAGVQQGFHFHQMDVKT
FT                 AFLHGDLKEELYMAIPDGVTAPPNTVCRLLKSLYGLKQSPRCWNEKFNDRL
FT                 LSLGFRRSLHDYCLYVRIVPGDEIYIILYVDDLLIAGRKIETIENLKKALS
FT                 SSFKMTDCGKISRFLGMKLEYDRENCSMKLSQEMNIDKLLTRFKMTDCNPN
FT                 KTPMEKNLTVSREGEATQEPYRELLGKIMYLMLCTRPDLCFPVGFLGRYQQ
FT                 KPTTNHWQCLKRVVRYLKGTKAKHLKFVRNESADPLVGYADADWASDAEDR
FT                 KSVSGYVFTVFGNAVSWSSKKQVTVATSSSEAEYVSLSSAVSEAIWLSGVM
FT                 ADLQLKRPSDPVVIFEDNQGAIGMAKNCESKRSKHIDIKHHFIRDHIANGR
FT                 VAVKYINTEHQLADLFTKPVDAVHLEKLCQGLGLAD"
XX
SQ   Sequence 3889 BP; 1100 A; 794 C; 1087 G; 908 T; 0 other;
     ggttatgggc accaccgcta aggacgttac gtacaacatc ccgttgctgc gtgggagtgg        60
     agcagacttt caaaactgga gctaccgtgc acgcctgttt ctcgaagcaa aaggcgttgc       120
     ggatgtgttg accagaacgg caccgacagg agaagcagaa aaggcgaagt ttgaagaaat       180
     ggaccggatc tccaaggcat tgctggtgag ttgtctatcg gacgaatgcc ttgaaatcgt       240
     tcgagagaag acgaccacga aggagatgtg gactagtctg gaatcggctt atgcgaagaa       300
     gtccgtggcg agtcaaacga tcgtcaggaa gcagttggcc cgtttgcgga tgaaggaagg       360
     agccgatatg cgaacgaatt tattggaatt cgacggactc gtgaggaagt tgaagacggc       420
     tggagcaacc ttggctgaaa gtgatctggt gtcgcagctc tttctaacgc ttccagattc       480
     tttcgatccg cttgttactg ccctggagaa tgttgctgag gaagatttga atctggatct       540
     tgtcaagcag cgactgttgg ctgaagaaag gaagcgatcg gatcggcaag gtgattcagt       600
     tgaagacaag tcggcagcgt tcacgagcga tacgaagaag aagttccagt aattccaggg       660
     taaatgccac aaatgtggac gccgtggcca catgaagaag gattgtcgcc agcgggaagc       720
     aaattcagcg aagaaggatg ctgtaagttt catggccgat gcaaacgttg cggagaaaag       780
     gcctggacga gtaatgttca agcttgattc cgggtgcagt gaccacctgg ttggcgagaa       840
     gaacgttttt gccgtgctgg agaagatgat agtgtggaga taaaggtcgc taaggaagga       900
     gaagctatgc ttgctgaaca gataggcgaa atcaacgcga caagcaacaa aggagtgcac       960
     ttcaacttga agaaagtgct gtatgtcccg gagctacgtg aaaatctgat gtccgtcaga      1020
     aaaatggcca gtgctgggat cgacgttttg ttctctggaa gcgtagctgt cttgaagaag      1080
     aacggcaagt tgttggcaac tggacatctt cgaggcaacc tgtacgagct cgagctgttg      1140
     ctagaagaag taaaagtcaa tcattgcgag gtagctatcg gaaacctttg gcatcgtcga      1200
     ctcgggcata tcggccaacg cggattggag accatggccc ggaaaggaat gctgaaaggt      1260
     atggatgaaa aggcaagtca aattgatttt tgtgatgcat gtgtacaagc aaagcaatgt      1320
     cgagaaccgt ttaaaggaac gcgtgttagg accagccggc ctttggagcg gatacattct      1380
     gatgtttgtg ggccgatcga tccgccggca tgggatggtt cacgatacat agtgagcttc      1440
     atcgatgacc atacccattt ctcaatgatt tacttgctga agcgcaaatc tggtgtattt      1500
     gagaagtttc aagactacga ggcgaaagta acggccatga tgggaaaatc catttcaaga      1560
     attacgagtg atcaaggcag ggaatactgt tcgacgaatc agttgcagta ctacagaacg      1620
     aaaggaatcc aactagagac aacggttgcg tacactcctc agcagaatgg tgtagcggag      1680
     aggttcaacc gaaccttggt agagaaaatt cgttccgtgc tcattcaatc taaagttccg      1740
     aagcgtttat ggtccgaagc tgcccttgcg tgcgtttact tgatgaatcg aagtccaaca      1800
     agcgcacttc cctctggtgt tacccctgca gaactgtggt ttggtgtcag accagatttg      1860
     gaaaaacttc gagttttcgg atgcaagagt ttcgtttgga ttccgaagca gcaaagacgt      1920
     aagttagatg ccaaaagtaa agaaatggtc atggttgggt acgcacccaa cggttaccgc      1980
     atgtgggacc cggtggcacg acatgtaaca attgctcgag acgtcaagtt tgatgagtcg      2040
     tgttttccgt acgctgtaat gagtcaagaa gatgatgttc cgttggtcgt ccacttcccg      2100
     ctcgagcaag agggggaaaa taaccagttg gccaccatag atgaaatcga ccaagcaaat      2160
     gaagaaaagg acgtgaatga tgaagactcg attgaagcac tggaaaacgc gctcccttcg      2220
     cccacagaaa gacgcgaaat tccgagagaa ttgtcgtcga ggtctagcgg acgggagcgc      2280
     aggctccccg gtaagttatt cgactatttt accggttata gagctctttc tggcgaatcg      2340
     atttccgcag atattccaga gtcgtttgat gagctgacag agcatgctga tcgagccatg      2400
     tggatggctg ctgtgagaga cgaactacgt tccatggaag agaacaaggt ttggcgtttg      2460
     tcaagctgtc cccaaggaat taggccactg aaatcgaagt gggtgtttcg gttgaaagat      2520
     gatgcggctg gcaacgcgtt catacataag gcgagactgg tggtgaaagg attcctgcag      2580
     aaggctgggg tcgattacga ggagacattc gctcctgtag caagacttgc cactatcaga      2640
     acggttctcg ctgcgggtgt ccaacaagga ttccacttcc atcaaatgga cgtcaagacg      2700
     gcgttcttgc acggcgacct gaaggaagaa ttatatatgg cgattcctga tggcgtaaca      2760
     gcacctccca atacagtgtg ccgtttgctc aagtcactgt atggactcaa gcaatcccca      2820
     aggtgctgga acgaaaaatt caacgatcgg ttgctgagct tgggcttccg acgatcgcta      2880
     catgactact gcctctatgt ccggatagta ccaggagacg aaatttacat aattctgtat      2940
     gtggacgatt tactcatcgc tggaaggaag attgaaacaa tcgaaaactt gaagaaagct      3000
     ttaagttcaa gtttcaagat gacggactgt ggaaaaatca gtcgtttcct aggtatgaag      3060
     ctagagtacg atcgtgaaaa ttgttctatg aagctttctc aagaaatgaa tatcgacaaa      3120
     ttattgacac gcttcaagat gacggattgt aaccctaaca agacacctat ggagaaaaat      3180
     ctgactgttt cccgcgaagg tgaggcgact caggaaccgt atcgtgagct tctggggaaa      3240
     attatgtatt tgatgctgtg tactaggcct gacctgtgct ttcccgtcgg attcctcggc      3300
     cgttatcaac agaagccaac aaccaaccat tggcagtgcc tcaaacgtgt ggtacgatat      3360
     ttgaaaggaa caaaagcaaa gcacttgaag ttcgtacgca acgaatcagc ggacccgttg      3420
     gtcggatatg ctgatgcaga ttgggcgtcg gatgcagaag ataggaaatc agtcagtggc      3480
     tacgtgttca ctgtattcgg aaatgctgta tcgtggtcga gtaaaaaaca ggtaactgtt      3540
     gctacatctt caagcgaagc ggagtacgtg tccttgagtt ctgctgtttc ggaagccatc      3600
     tggttgtcag gagtaatggc agatcttcag ctgaagcgtc catcggatcc ggtcgtaatc      3660
     tttgaagata accaaggcgc tataggtatg gcgaaaaatt gtgaaagcaa gagatcaaag      3720
     catatagata tcaagcacca cttcatcaga gaccacattg caaacggacg agtagcagtg      3780
     aagtatataa ataccgaaca ccaattggcg gatttgttca ctaaaccggt ggacgcggta      3840
     cacttggaga agctgtgcca gggcctagga ttggccgatt gagaggggg                  3889
//
ID   Copia-23_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_AA_;
KW   Copia-23_AA-I; Copia-23_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 950-950 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 207 BP; 55 A; 49 C; 36 G; 67 T; 0 other;
     tgttggcgta gtaggcaatc ggacgtcgcc tccctaaatt gagttgttag gatcccctag        60
     caacaaccag ttacctgttg gtgaaaatta acaaactggt ttattccata atcaaactcc       120
     gttcagttaa cacctaataa acctaagctt ttcgtttctg ttaaactgtg cctattattt       180
     ggagtttccc tgccattccc ttcaaga                                           207
//
ID   Copia-23_CQ-I repbase;    DNA;    INV; 3481 BP.
XX
AC   AAWU01016733;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_CQ_;
KW   Copia-23_CQ-LTR; Copia-23_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3481
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 361-361 (2011).
XX
DR   GenBank; AAWU01016733; Positions    9201   12681.
XX
CC   Positions [885-1409] - Integrase core
CC   'GTATC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           879..2444
FT                 /product="Copia-23_CQ-I_2p"
FT                 /translation="MARPPFPAAAVKRSKEILDIVHSDVCGPMTPTPGGCK
FT                 YYMTMIDDHSRYTVVYFLKAKSEVEERIRQYVRFVQTQFGRKPKVVRSDRG
FT                 GEYTGNSLRKFYEDEGIKAEFTAGYTPQQNGSAERKNRTLNEMGLCMLLDA
FT                 GLDRQFWAEAVNTAAYIQNRLPTKAIETTPFEMWFGEKPDLQHMKIFGCHA
FT                 YVWTPSQKRKKLDAKSEKMVFVGYSSEHKAYRLLNPKSGKIVVSRDVKFLE
FT                 LTPPSKKSEAEEIDQPEEVPVHLNAANDESESDDEFFGFDETTDESGDEFG
FT                 GQPPNEAAPGPDGPNEDVAAQEEEPALLQEEQLDQNNSPVAQPVPLGPRRS
FT                 TREGRGVPAARYEGSIGIAAGSTAEPRTYDEAVNSVESVQWKTAMEEEMAA
FT                 HRENGTWKLTQLPTNRRDIGCKWVFKRKEDETGEVARFKARLVAQGFSQQY
FT                 GSDYDQVFAPVVKQVTLRAVLTLASKRQMIVRHIDIRTAYLYGELQEELYM
FT                 RQPPGYSNGDPSVVCRLCGTTASTRR"
XX
SQ   Sequence 3481 BP; 903 A; 852 C; 1039 G; 687 T; 0 other;
     ggttatgggc gcagcccgag ccccgcggaa gattgaggtt acgttttatt tctaatcgtt        60
     tcggaaaagt tggagtacgt ggtttcgcgc gtgaagagat aaaagttttt ttttgtgctc       120
     ggccgggatt gttgagtgaa caatggattt ggcgcgagtt actaaattgg gtgacacgaa       180
     ttacgaaacg tgggcttttt cggtcaaggc gctcttgcgc cgtctgaaac tctggaagta       240
     cgttgagccg ggtactcccc ccgccgcgcc gagtgcggaa tggtccaccg gagacgagga       300
     tgctctcacg acaatccaat tggtggtgga ggaaagccag cagagcgtca tccgcgataa       360
     ggtgactgcg aaggccacct gggaggcact gaaggaacgc cacagtaagc tgcggctcgg       420
     ccagatgatc atcatacaaa tcgccactca gaactaccaa gatggcgaca gtattgagac       480
     ttatttgagc tccatagaaa agctttacgc tcgtttggac aacgctggtg tgcggatgca       540
     ggagtgcatc aaggtcgggc tgatcttacg ggggctgcca ccgtcgtatc gcccacttat       600
     catggtactg gaagcgcgtg acgaagagga cctgacgttg gccatggtca aggcgaagct       660
     gttagacgag gcgaacaact tccagcacca gcaggcacgt gggcaggccg agcaagcgct       720
     caaggtgaaa acccggccaa aggtgctggt gcgctaccgc tgcggtaagg cagggcatcg       780
     caaggcagat tgcgacgagt cggacgacga gggatccaag aagttttcga agaagaagcc       840
     aaaagaaaag gcaaaacaag tgctgtatcg agggcaatat ggcgcgacct ccgtttccgg       900
     ctgccgcggt aaaacgatcc aaggagatcc tcgacatcgt gcacagcgac gtttgcggcc       960
     ccatgacgcc aacacccggt gggtgtaagt attacatgac aatgattgac gatcacagcc      1020
     gttacactgt tgtgtatttc ctcaaagcta aatccgaggt tgaggaaaga atccgccagt      1080
     acgtacgctt cgtgcagacc cagttcggcc ggaagccgaa agtcgtgcga tcggatcgtg      1140
     gcggcgagta cacgggaaac tcactccgga aattctacga agacgaagga atcaaggcgg      1200
     agtttacggc cggctacact ccacagcaaa atggaagtgc cgaacggaag aacaggacgc      1260
     tgaacgagat ggggctgtgc atgctgctgg atgccgggtt ggatcgacaa ttctgggctg      1320
     aagcagtaaa cacggcggct tacatccaga atcgcctgcc gacgaaggcc atcgagacaa      1380
     caccgttcga gatgtggttc ggcgagaagc ccgacttgca gcacatgaag atcttcggat      1440
     gccacgccta cgtttggacg ccctcgcaaa agcgaaagaa gctggatgca aaatccgaaa      1500
     agatggtgtt cgtcggttac tcgtcagagc acaaagcgta ccgactgctc aatccgaaat      1560
     ccggtaaaat cgtcgtgagc cgagatgtta agttcctgga gctaacccca ccgagcaaga      1620
     aaagtgaagc agaggaaatc gatcaaccgg aagaagttcc tgtccacttg aacgcggcga      1680
     acgacgaatc ggaatccgac gacgagtttt tcggatttga tgagacaacg gacgaatcgg      1740
     gcgacgagtt tggaggtcaa ccaccgaacg aagctgcacc cggtccggat ggaccgaacg      1800
     aagatgtagc tgcccaagaa gaggaacctg cgcttcttca ggaggagcag ttggaccaaa      1860
     ataactcgcc ggtagctcaa ccagtgccgc ttggtcccag acggtcaacg cgagaaggac      1920
     ggggtgttcc agctgcaagg tacgaagggt cgatcggaat cgcagctggt tcaacagcag      1980
     agccccgcac ctacgacgaa gcggtgaaca gtgttgaaag tgtgcaatgg aagaccgcta      2040
     tggaagagga gatggccgcc caccgagaga acggcacctg gaagctcaca caattaccaa      2100
     caaatcgacg agatattggt tgcaagtggg tgttcaagcg gaaggaggac gaaactggcg      2160
     aagttgcccg cttcaaagca cgattggtcg cacaaggctt ctcgcagcag tacggaagcg      2220
     actacgacca ggtgtttgct ccagttgtga aacaggtgac gctgcgggct gtactcacct      2280
     tggcaagcaa gaggcagatg atagtgcggc acatcgacat ccggacggcg tatctgtacg      2340
     gtgagctgca ggaggagcta tacatgcgac agccgcctgg gtacagcaac ggagatccga      2400
     gtgtcgtctg ccgtctgtgt ggaacaaccg catcgacacg gcgttgaaaa gcatagagtt      2460
     cacgcgttct tctgcagatc aatgcctcta cacccgaggc acgatttgcg tcctcatcta      2520
     tgtcgacgac atcgttgtcg cttgccacac atctgaggaa tacgaatcga ttgtgaaatt      2580
     gctgcgccag agtttcaagg tcgtcgagct cggtgacatc aagtttttcc tgggaatcca      2640
     cgtcaggaag ggagatggcc actatgtcct gagccagaag tcgtacattt cgaaaactct      2700
     cgctcgattt ggtatggacc agtgcaagac gtcgaagatc ccgatggcaa gcggctttct      2760
     acaacaaagg gaggaggatg gcgaagctct tttgaaccca ggacagttcc agagcctcat      2820
     cggtgttttg ttgtacatcg ccgtcaacac tcgtccggat attagcatcg ccacttccat      2880
     tctcggacga cgtgtgacaa ccgcaacaac agcagactgg accgaaggca agaaggtgct      2940
     gcggtatctg aaaggtactc tagactacga gttacatctg ggaggcaagc agaatttgca      3000
     gttcgagtgc tttgtcgatg cggattgggc aggtgaggca tccgatcaca agtccaacac      3060
     tgggttcatc ttcaaactcg gaggaggact gctcagctgg ggctgtcgga agcaaacagc      3120
     agttgcgctg tccagcaccg aagcagaata cgtggcgctc gcggagtgtc tccaggagct      3180
     catgtggctc cgcaaactga tggtggatct gtcggaacca cttcctgagc cgatggtggt      3240
     ctacgaggat aaccagagtt gcatcgctct gacagctgcc gacaggactt cgcgtagatc      3300
     gaagcacatc gacacaaagt actgtttcgt gaaggatttg gtcaacgaag gagtggttgc      3360
     ggtcaagtac tgttcaacag acctgatgga tgctgacttg ctgaccaagc ccctgggagc      3420
     tgtgaaactt caacatttcc ggtcggcgat tggagtaaag tgcgtcgacg ttgaggagga      3480
     g                                                                      3481
//
ID   Copia-23_CQ-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   AAWU01016733;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_CQ_;
KW   Copia-23_CQ-I; Copia-23_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 362-362 (2011).
XX
DR   GenBank; AAWU01016733; Positions    9017    9200.
XX
SQ   Sequence 184 BP; 58 A; 57 C; 22 G; 47 T; 0 other;
     tgttagcaga tgtccaaccc tgcagtaatc aacatcacac gcacacaacc acacaactaa        60
     tgagacagcc ctagctgtca aacatgactt taaataaaat caatccaagt tattcgctca       120
     cacagtacgg acgtgtttac tcttttctaa gcctcattcc ctctctccac tcgcaattcc       180
     taca                                                                    184
//
ID   Copia-23_NVi-I repbase;    DNA;    INV; 6872 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   internal portion; Copia-23_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6872
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(7), 1514-1514 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1421..6799
FT                 /product="Copia-23_NVi-I_1p"
FT                 /translation="MFLDNSLIEERLLESVKKEIKRIRAEEVAPAEKVDPS
FT                 QRGNTLSPKLDVNTVTADGGPAYKFDEGKEQKSDFVDNDSWKNKFEANMLG
FT                 KSTPVIKSNQLIQLGLGLNNFRHDXRTSKLGQFSLNNTDKNLEISEITAKL
FT                 DKLEKENTDLKKTIETECNRVHDDVVTELLRHKWAIKENYSWIEEKVQFWA
FT                 EQDRLCDEAQDESAGLSADAENAQNNNQPSNQNISNKVTSNAHVSRDYIAK
FT                 LVQDEVNKIDSNKSIGNIQDKIQIEVTNRDSTFRREYKLTQNLNVNTFLDF
FT                 LNSELTLADLLYVIDSTVKPTRVLDETKLEKDKVRVRDIIINRIDISYYEK
FT                 VSDIRDPIKLLDEIKRIKENELNVTTRSVRKELHSIIYNPHKERASAFWDR
FT                 FDRIVRLYNKLPDTPPLSEVEINDAFYEAIVVHLPQVKETEFLNKNTTGKV
FT                 LNLKQLKDYIVQQESARIGSNGSAGQKAEAGAKAYLVTNPGVLCYNCGNKG
FT                 HYKDECTRKGKMCFRCKRYEGHVRANCPYTENQLEKVLKENESQRRYESSN
FT                 SNRGGRRGGFSRGGKRRNSESQKGSNPKKIKSDRGHARGRSRGKGRQNKQN
FT                 NNNSTKTSESGECTGLYVDSKFLNAVESDKNRLIRFLADSGATEHMTNSKL
FT                 IFKTFDNTKRLDIKCANDNDSAIIKSEGVGNISGYTKNDDFLSLKNVIYAK
FT                 SLSENLLSLRKFVDKGLGIYLDNKXIDIFDPXSKTIFVSGIYEQPYWVIEL
FT                 ETNNSDXNENNNVNKVVAYITTRRREYPTVSVAPNKKSESXIKETTREQDK
FT                 LESTEISKDSKLDEPMQIDNELNVEVNSDNNKLCSSYSNFENTLNDRKICN
FT                 LXESIDLEKLDCESNISKINNLFYTNKAMLWHVRLGHASLKKLKEFQKKFP
FT                 NLKNLKEIKFDDSVMDCEVCIVSKFNKLPFSSTRQRATKPLQIVHADTMGP
FT                 ISPATHPKKYRFISVFIDDYSRLAIAYPMKHKSETGHCLESFIKSSRNLLG
FT                 YDAKFCYLRCDQGTEFTGGYTQEVLDKFEAELKLASPDTPEHNGVAERFNQ
FT                 TIQKLTRALMYDTRLPENMWDLALNAAVYYYNRTPHSSNEMIPPLQMFKPD
FT                 FKLNLEQLKRFGCIAYIKVQRKTGPKFDQLGKRVVLIGYKPTGYLFLKPEE
FT                 GKYYESRDVRFNEKLVFGDKYNKQSIKDWSNPMEDINKETWLVKFDEEDEI
FT                 LISETEGERRRRGRPRKEKGVELPSESHTLESDLNLLESDELNAFIATVEN
FT                 DPNSYREAMSTKNKLDWQGAIKSELDSMEKNKVWTLVDRPVIQGGKRPNII
FT                 DSRWVLKTKVGLNNDNKYKARLVIRGFKDQNHYKLMETYAPVSRLPLIRSV
FT                 LAIINKFDLEVRQLDVKTAFLNGTIDNEIYMEIPEGIDCSPVTRRDKVCKI
FT                 QRALYGLKISPKKWYEKFTEVVIKLGLESHDSEPCLFTWRNNEKYLIMLLY
FT                 VDDILITSNDTHKLDEITSKLKLEFEMSDMGEPKSFLGIEINRDRQNRTMT
FT                 LTLENYIDKMLKRFGYSEMHPQRTPMVTNQVANRERREREESENQLENTLN
FT                 KTNGPYREIVGSLLYLANTVRPDITYAVNVLSRHQINPTDEEWKMVKRVCR
FT                 YLKHTRSLGLKFEGKLDNLQGFSDASFADCKGSITTSGFVIKLYGDTVAWK
FT                 THKQTFVALSTCQAEYVAMSEASQEMVSLQNSLSLILRNSFLPMTLWCDNK
FT                 AAEASTQVSSTSKLRHMTVVREHYVRECVARNLIKISWIASKDQIADIFTK
FT                 ALPFELHAKLTKLLLNYYLKY*"
XX
SQ   Sequence 6872 BP; 2438 A; 1169 C; 1460 G; 1785 T; 20 other;
     ggttatgggc ccagcacgct tccactgcgc tgcttaaggc tttgctagac ctgtgcgtgt        60
     acttggtgaa aatatctcga gtgaagtgct gaaaaatacg ggttttccct ttaagtgaaa       120
     agtttgacga tcaaagttcg acgctctgca ttccagcttc gacgtgcacc gctcgacctg       180
     tggaggacag gacaagctac aggcatctca gcgtggtttt gctgcggaga cgaccggtga       240
     ctcttttggg actacttcag ctcgatttgt gcaacgatgt ccgatcagac aaaaagagta       300
     tctgttaata tgcccaagac aaggggtaag tcaccgtctt tctctttggt aaagtgcgcg       360
     agtgaaattt tgcgggaaga cggtaaaatc ttccaacgag catgacgcaa aatttgtagc       420
     gcggcacgtg aggcaggcga ttcttagaat cagcgcgaag ccggacaacg tgttcgagca       480
     tgcccgcgcg cgtgtttcga gcgctcggga caaagacgca gcgaaacaaa atggcgacgc       540
     gtggcaacgc gggaaagaaa agccgttggc gcgttcgagc gcgagcgcca tcttactctc       600
     aatgcacatg agagcgacga gacgagctag ttactcgtgc gcgcaaccga tggcgctagt       660
     ttcgcgactc gaagcttgac tgcagtatac gtttacaaat accgatgctt gatgacacaa       720
     tagtgtaaat taaagatgat agttcgattt ttaatttaaa attattcaag tttgagtctt       780
     aaactatgtt acggcacgct gatcgaatcg ggaagcagaa acgtttatca aaattaaact       840
     caagttcgac caaaattaat taaaattgca attttttaag ttcgactaaa atttcataaa       900
     aacagttaac tgatttgctt gaattaaaca gaccagaaaa atctgcagtt gttcttgctg       960
     ctccaagacc aggagctggg aatctcggaa aaataccctg atgattctat ttatccagaa      1020
     atggacgaag agggaaacat caacatactg acgtcaagtg gtgtaaaata tgagataggt      1080
     aaagcttgaa tttttgatat aagctcgaaa attaaaataa aaaaaaactc gtttttccac      1140
     aacaaaatat gtacatatta aatctaaata gcatgctgtt cagttccaaa actaaagcgt      1200
     tggccagtac atgcagggta gtgtatgttg ttgctgctac actgtgtgtg ctgtaaaatc      1260
     acaggtttat ttttttttat ctctttatat aaaaatcagg caattagcac tgcttctttg      1320
     attgtcgttc gtcaactaag catatgctta ataaattgct acatgtgata gagtgctaat      1380
     tttgattgtt gttcgtcaaa acaagcaact catttataaa atgttcctag ataattctct      1440
     aatcgaggaa cgtttactgg aatccgtgaa gaaggaaatc aaaaggattc gagctgaaga      1500
     ggtggctcca gctgaaaagg ttgacccaag ccaacgtggg aataccttgt ccccaaagct      1560
     ggatgttaat actgtaactg ctgacggtgg gccggcctat aagttcgatg aagggaaaga      1620
     acaaaagtcc gattttgtgg ataatgacag ctggaaaaat aagtttgaag caaacatgct      1680
     aggtaaatcc accccagtta ttaaatcaaa tcagcttata caactgggtt tgggactgaa      1740
     caatttccgt catgattmga ggacatctaa gctcggacag ttttctttga ataatactga      1800
     caaaaatctt gaaatttcag aaataacggc taagctggat aagttggaaa aggagaatac      1860
     agatctcaaa aagacaatcg aaacggagtg caatagagtg catgacgatg tggtcaccga      1920
     actgctcaga cataaatggg caattaaaga aaattacagc tggatagaag aaaaggtaca      1980
     gttttgggct gaacaggatc gtctgtgcga tgaagcacaa gacgaatcag ctggactttc      2040
     ggcagatgca gaaaatgcac aaaacaacaa tcaaccgtcg aatcagaaca tctcaaataa      2100
     agtaacatca aatgctcatg taagtagaga ttatatagca aaactagttc aagatgaagt      2160
     taataaaata gattcaaata aaagtattgg aaatatacaa gacaaaattc agatcgaagt      2220
     aacaaataga gatagtactt ttcgtagaga atataaatta acacaaaatt tgaatgttaa      2280
     taccttttta gactttttaa attcagaatt gactcttgct gatttattgt acgtgattga      2340
     ttcgacggtt aagccaacac gtgtactcga tgagacaaag ctggaaaaag ataaagttcg      2400
     agttcgcgat attatcataa atagaattga tatatcttat tatgaaaagg tatctgatat      2460
     tcgggatcct attaaattgc tggatgaaat caaacgtatt aaagaaaacg aattaaacgt      2520
     gactacaaga agtgtaagaa aagagttaca cagtattata tataacccac ataaagagag      2580
     agcatctgct ttctgggata ggtttgatag aatagttcga ttatataata aattgcctga      2640
     tacgcctcct ttgtctgaag ttgagataaa cgatgcattc tatgaagcca tcgttgtaca      2700
     tttacctcaa gttaaagaga ccgagttttt gaataaaaat acaactggca aagttttaaa      2760
     tttaaaacaa cttaaggatt atattgtaca acaggaatca gctcgaattg gatcaaacgg      2820
     gtcagctgga cagaaagcag aagctggagc aaaagcatac cttgtgacta atcctggggt      2880
     gctttgctac aactgtggca acaagggtca ctataaagat gagtgcacaa ggaaaggcaa      2940
     gatgtgcttc agatgcaaaa ggtacgaagg gcatgtccgt gcaaactgcc catacacgga      3000
     gaatcagctg gaaaaggttt tgaaggagaa tgaaagtcaa agaaggtatg aatcctcaaa      3060
     ttctaatcgg ggtggtagac gaggtggctt tagtcgtggt ggaaaacgac gcaattccga      3120
     atcacagaag ggtagcaacc ctaagaaaat caagtccgat agaggccatg cccgaggcag      3180
     atcacggggg aaaggtagac aaaataaaca aaacaacaat aattctacca aaacctccga      3240
     atctggtgag tgcacaggtc tgtatgtaga cagtaagttt cttaacgcgg tagaaagcga      3300
     taaaaaccga ctgattagat ttctggcgga ctctggtgct acggagcaca tgactaattc      3360
     taaattaatt tttaaaacgt ttgataatac taaaagactc gatattaaat gtgcaaatga      3420
     caatgattca gcgattataa aatcggaggg agtaggtaac atatctggtt acaccaaaaa      3480
     tgatgacttt ttaagcttga aaaatgtaat ytatgctaag tcattgtcgg aaaatttgct      3540
     atcactgagg aaatttgttg ataagggytt aggtatctay ttrgayaaya agaraatyga      3600
     tatwtttgat ccrrtgtcaa aaacgatttt tgtctctggr atatatgagc aaccttattg      3660
     ggtaatagag ttagaaacaa ataactckga taraaatgaa aataataatg taaataaggt      3720
     tgttgcatat ataaccacaa ggcgtcgtga atatccaact gtaagtgttg cgcccaataa      3780
     gaagagtgaa tctgmgatya aagagacaac tcgtgaacaa gacaagcttg aaagtactga      3840
     aattagtaaa gatagtaagc ttgatgaacc aatgcaaatt gataatgaat taaaygtaga      3900
     agtaaattca gacaacaaca agctatgctc tagttattca aatttcgaaa acactttaaa      3960
     tgatagaaaa atatgtaatt taratgaatc aattgactta gaaaaattag attgtgaatc      4020
     taacatcagt aaaatcaata atttgtttta caccaataaa gccatgctat ggcatgtcag      4080
     attgggacac gcttcrttga aaaagttgaa agaatttcag aaaaagtttc caaacttgaa      4140
     aaacttaaag gaaattaagt tcgatgattc tgtgatggat tgcgaagttt gtattgtgtc      4200
     aaaatttaat aagttaccct tcagttcgac tagacagaga gcgactaaac ctctgcaaat      4260
     tgttcacgca gacacaatgg gaccgattag tccagcaaca catcccaaga aatacagatt      4320
     catatctgta tttatcgatg attattcacg acttgcaata gcgtatccaa tgaaacacaa      4380
     gagtgaaacg ggtcactgcc ttgaatcttt cattaaaagc tcgagaaatt tattaggata      4440
     tgacgctaaa ttctgttatc ttagatgtga tcaaggtaca gaattcacag gaggatatac      4500
     acaagaagtt ctcgataagt ttgaagcaga gctaaagtta gctagcccag atacacctga      4560
     gcataacgga gtggctgaac gatttaatca gaccatccaa aaattaacga gagctttaat      4620
     gtatgataca cgcctacctg agaatatgtg ggaccttgcc ctgaatgcag cagtctatta      4680
     ctataataga acgcctcaca gctcgaacga aatgatacca cccttgcaaa tgtttaaacc      4740
     agattttaaa ctcaatctgg aacaattaaa gcgttttggt tgtatcgctt atatcaaagt      4800
     acaaagaaag acaggaccta agttcgatca gctgggaaaa agagtagtac taataggcta      4860
     caaaccaact ggatatctat tcttgaaacc agaagaaggt aaatactacg aaagcagaga      4920
     tgttcgattc aacgaaaagc ttgtatttgg agacaaatac aataaacaga gcatcaaaga      4980
     ttggtctaat ccaatggaag atataaataa ggagacgtgg cttgttaagt ttgatgaaga      5040
     ggatgaaatt ttgatctctg aaacggaggg agaaagacgg cgaagaggtc gcccaagaaa      5100
     agaaaaagga gtcgaactcc catcagaatc acatacactt gaatccgact taaacctgct      5160
     ggaaagcgat gaactgaatg cgttcattgc aactgtagaa aacgatccaa attcttacag      5220
     agaagccatg agtactaaaa ataagcttga ttggcaagga gccattaaaa gcgaattaga      5280
     ctcaatggag aagaataaag tctggacact tgtcgacaga cctgtgattc aaggaggaaa      5340
     aagacctaat ataattgact caagatgggt tctaaaaaca aaagttggat tgaataatga      5400
     caacaagtat aaagctcgac ttgtgataag gggtttcaaa gatcaaaacc attataaatt      5460
     aatggaaaca tatgcacctg tttctcggct acctctgatc agatcagtgc tagcaatcat      5520
     aaataagttt gatctcgaag taagacagct tgatgttaaa acagcttttc tgaatggaac      5580
     aatcgacaac gaaatttata tggaaatacc tgagggtatt gactgctcac cagtaaccag      5640
     acgagataaa gtctgcaaaa ttcaacgtgc tttgtacggt ttgaaaataa gtccgaaaaa      5700
     gtggtatgaa aaattcacag aagttgtaat aaaactagga ttagagtctc acgattcaga      5760
     gccgtgtctc tttacttggc gaaacaacga gaaatatctg ataatgttgt tgtatgttga      5820
     tgacatactg ataaccagta atgacacaca taagctagat gaaattacgt caaaacttaa      5880
     gttggaattt gaaatgtctg acatgggaga gcctaagagc tttcttggca ttgaaataaa      5940
     cagagacagg caaaatcgaa cgatgactct gactctagaa aattacatag acaaaatgtt      6000
     aaaacgtttt ggatatagtg aaatgcatcc tcaaagaacg ccaatggtga caaaccaagt      6060
     agcaaatcgt gaaaggcgag aaagagagga aagcgaaaat cagctcgaaa atacactgaa      6120
     caaaacaaac ggtccttata gagaaatagt tggttctctt ttgtatcttg ccaacactgt      6180
     acgtcccgac ataacgtatg cggtgaacgt gttaagtaga caccaaatta atcccactga      6240
     tgaggagtgg aaaatggtga aacgagtttg tcggtatctg aaacacacca gaagtctggg      6300
     tcttaagttt gaaggaaagc tcgataactt gcaaggtttt tcagatgcca gttttgctga      6360
     ctgcaaaggc tcgattacaa cgagtggatt tgtaatcaaa ctgtacggtg acactgtagc      6420
     gtggaaaacc cacaaacaga ccttcgtagc tttatcgacc tgtcaagctg agtatgtagc      6480
     aatgagcgaa gctagtcagg agatggtatc tctacaaaac tcgttaagct tgattctgag      6540
     aaactccttc ttgcccatga ctctttggtg cgataataaa gctgctgagg ctagtactca      6600
     agtaagcagt acaagcaaac tcagacatat gactgtagtt agagaacact atgttcgaga      6660
     gtgcgtagcc agaaatctaa tcaaaatcag ttggatcgca tcaaaagatc aaatagcaga      6720
     tatattcaca aaggcgttac cttttgaatt acatgctaaa ctaactaaat tgcttttaaa      6780
     ctattattta aaatattaac atttgtttgc ttcttttcag acgctaaacc gtaatgctgg      6840
     acgacgtcgt tagaaatctg ctcgggaggg ag                                    6872
//
ID   Copia-23_NVi-LTR repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-23_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-345
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(7), 1515-1515 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 345 BP; 80 A; 82 C; 82 G; 101 T; 0 other;
     tgttgagtat aagcgagcag aattcgtccc gccagcgact ccatgcgtgc aaggcatgat        60
     gggactgcgc tctccccctc tcaccggcct cgacggccag cgtcgacgtc gcggctgcgg       120
     cggcggcgct cacttctctg tgtgctctca tgcgagaaag acgcgttcgc attcttatac       180
     gttttgaata tacttatttg tgttttatat aagctggatc tttgtaataa catactctgt       240
     ttataacaga tcgaaggtaa gctcgatgtg aataaagaat tgtcatttgc cataaagtgt       300
     gttagttatt ttcccaagac acgccgggtc gattaatttt caaca                       345
//
ID   Copia-23_SI-I repbase;    DNA;    INV; 4199 BP.
XX
AC   AEAQ01023869;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_SI_;
KW   Copia-23_SI-LTR; Copia-23_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023869; Positions    4681     483.
XX
CC   Positions [1635-2135] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..4112
FT                 /product="Copia-23_SI-I_1p"
FT                 /translation="MEFFHGVEKLTGKDNWTTWKFSSRNLLRGVEGAYEVC
FT                 IGELVKPAVLAAGANPAEQQAYSAVLQKWDKADRAAAQILVKTLDPKVLAL
FT                 LVACESAREMWIKLHAIFEQQTKLAAHAVQSEFFGFSMAPGDDLVSHIAKF
FT                 EALVLRLQQLNKKPDDSSLMVRLLDTLPESYESFRQSWWARPEDKQTLEEL
FT                 IAVLTADDTRRNVYKVKQEKTEALFAAANLKNKNGATSTRVLERKPADTKK
FT                 KKVPKCFGCGEKGHVRKDCKKDKGKKTSSNSNSSSTSGGDFAFVMEVENAE
FT                 CEQDVWLMDSGATNHYCLHREWFVTYEVFAKPLTVLVGNNSTMLAVGKGRI
FT                 NTEALVNGEWLTCHIDNVLHVPDGRRNLMSLSLILDKGLNMRVNRKRCEFV
FT                 KDGVVRLCGERYGMLYKLHIRATSNTPCEVNLASAESLQVWHERLGHQDKR
FT                 HVTKFLRDRGVTVITDDSFCAACVEGKQQRTTFKSRTQRSTRAGEIMHADV
FT                 CGPMEEQSLGGAKYFVCFTCDYSKFRIVQFLKEKSEVVATVEELLKFVENQ
FT                 CGRPLRVFQSDGGLEFNNEKMKKLMKANGVQFVITNPYSPEQNGCAERTNR
FT                 TIVESARTMLLAKKLPKILWAEAVNTAVHLLNRSGPTGESGKAPYEIFTGK
FT                 SVNLHQLHVFGTSCFVQIPKERRHKWDAKGKPGVLVGYSQDIDGYRVWIQG
FT                 EKTVVRSKNVTFEPEVGGKTVTVVSDDCEPKTKAVEPVESHPGRVRADEMP
FT                 DESEIDAERETQFAGGKQTSNNVPVVEYQGRLRDRSTLCPPERYVEMCVVE
FT                 LEPRSYKEAMESVERESWKEAMREELQSLAENSTWELTELPSNRRAITNRW
FT                 VFKVKRNPNGSINRHKARLVVRGFNQRPGVDFLETFSPVVRFDTLRSVLSV
FT                 AATEHLKLAQFDVKTAFLNGNLSEDIYMTQPEGFADGSNRVCKLKRSLYGL
FT                 KQSPRCWNYKFKEVVMGLGMTESSADPCLFVRSVNGNKLLVVLYVDDGLVA
FT                 ATRQSDIDKFLRELRSRFKITIESFGCFLNLQIAQDADGSITIHQQGYAET
FT                 VLRRFKMDGANPVSTPIDQYIHQNTADVVLSSAPYREAVGCLMYLAVATRP
FT                 DIVFAVNYASQFLEKPEMKHWELVKRILRYVRGSSSTGIRYSTSLASGELH
FT                 VYSDADYASDPKTRKSVSGMISMYCGGAITWASNRQKCVSLSTTEAEYVAA
FT                 CEAAKEAVWLKYLFEDISPLKSVPTLIVDSTSAMKLSKNPEFHKKSKHIDV
FT                 RYHYLRDQVVNDRLCMTYVCSKQQVADICTKPIPRVQFCYLRSLIGMY"
XX
SQ   Sequence 4199 BP; 1130 A; 769 C; 1167 G; 1133 T; 0 other;
     tggtagcaga gcgtggtttt tggtgtagag gaggggagat cgatattgat ttcttgtgtt        60
     cgcgtgatct tcgtcggcca tttttttttt cgttgctgtt cattctcgag agacgcgtgt       120
     ttcggcgtga gtggaacttt gtcattttcg ttgactgaaa gtttttgctg gtgatcgcta       180
     tagacatgga gttttttcac ggagttgaga agttaacggg aaaggacaat tggaccacgt       240
     ggaagttctc gtcgcggaat ctgttaagag gcgttgaagg agcttacgag gtgtgcattg       300
     gtgaactggt aaaaccggcg gttcttgctg caggtgcgaa tccggccgaa caacaggcct       360
     attcggcggt cctgcaaaag tgggataaag cggatcgtgc tgctgctcaa attttggtga       420
     aaacacttga tccgaaagtg ctggcgttac ttgtggcatg tgaaagtgca agagaaatgt       480
     ggataaaatt gcacgccatt tttgagcagc aaacgaagct ggctgctcac gcagtccagt       540
     cagaattttt cggttttagc atggcgccgg gtgacgatct ggtcagccat attgccaaat       600
     tcgaggcgct tgtgttgaga ctgcaacagt tgaacaagaa gccggatgac tcatcgctaa       660
     tggtgcggtt gctggacact ttgccggaaa gctacgaaag ttttcgacag tcatggtggg       720
     cacgcccaga agacaaacag acgctcgagg aacttattgc agttctcacc gccgacgaca       780
     cgcgacgcaa cgtatacaag gtgaaacaag aaaaaacgga ggcgttattt gcagcggcta       840
     atttgaaaaa caaaaacggt gctacttcga cgcgtgttct tgagcggaaa cctgctgaca       900
     cgaagaaaaa gaaagtgcca aagtgtttcg gttgcggcga aaaagggcat gtgaggaagg       960
     actgcaaaaa ggacaagggc aagaagacgt caagcaatag taactctagt agtactagtg      1020
     gcggtgattt tgcttttgtt atggaagttg agaacgctga atgcgaacag gatgtttggc      1080
     ttatggactc gggagctacg aatcattact gtcttcatcg agaatggttt gttacctatg      1140
     aagtttttgc aaaacctctc actgttcttg ttggtaataa ctcgacaatg cttgctgttg      1200
     gaaaaggaag aatcaatact gaggctctgg taaatggaga gtggttgacc tgtcacattg      1260
     ataacgtttt gcatgttcca gacggccgtc gcaatttgat gtcacttagt ctcattcttg      1320
     acaaaggttt gaatatgcga gtgaatcgga agaggtgcga gtttgtcaaa gatggagttg      1380
     tacgtttatg tggagagagg tatggaatgc tgtataaact gcatatccgt gcaacaagca      1440
     ataccccttg tgaggttaat ctggcgtctg ctgagtctct tcaagtgtgg cacgagcgct      1500
     tgggtcacca ggacaaacgt catgtcacaa agttcctgcg agatcgtggt gtgacagtca      1560
     tcactgatga ctctttttgt gcggcgtgtg tcgaggggaa gcagcagagg actaccttta      1620
     agtcgagaac gcaacgttca acgagagctg gcgaaatcat gcatgctgac gtctgtgggc      1680
     caatggagga gcagtctttg ggaggcgcta agtattttgt ctgtttcacc tgtgattact      1740
     cgaagtttcg cattgtacag tttttgaaag aaaaatctga ggttgttgct acagtcgagg      1800
     agcttttgaa gtttgttgaa aatcaatgtg gacgtccatt gcgcgtattt cagagtgatg      1860
     gaggacttga gtttaataat gagaagatga agaagctcat gaaggccaac ggagtccagt      1920
     ttgtgattac caacccttac tctccagagc agaatggatg cgcggagcgt accaatcgca      1980
     caatcgtgga gtcagcacgc acgatgcttt tagcaaagaa attgcctaaa atattgtggg      2040
     ctgaagcagt caacaccgct gtccacttac tcaatcgatc cggtcctact ggagagagtg      2100
     gaaaagcacc ttatgagatt tttactggaa aatccgtgaa cttgcatcag ttgcacgtgt      2160
     ttggaactag ttgttttgta caaattccaa aggagcgacg acacaaatgg gatgcaaagg      2220
     gaaagccagg agtcttggtg ggctattctc aagatatcga cggttatcga gtctggattc      2280
     aaggtgagaa aactgtagtc cggagcaaga acgtgacttt tgagcctgaa gttggtggaa      2340
     agactgttac tgttgtgtct gatgattgtg agccgaagac taaggcagtt gagccagtag      2400
     agtctcatcc tggaagagtt agagctgatg aaatgccaga tgagtctgag atcgacgcag      2460
     aacgtgagac tcagtttgcc ggtggaaagc agacaagtaa caatgtacct gtagttgagt      2520
     atcagggacg tttgcgagac aggagtactt tatgtccacc agaacgttat gttgagatgt      2580
     gtgtggttga gcttgaaccg agaagctaca aggaagcaat ggagtcagtc gagagagagt      2640
     cttggaaaga agcgatgcga gaggaacttc aatcactggc tgagaactct acttgggaat      2700
     tgacggagct gccttccaat cgtcgagcca tcacgaatcg ttgggtattt aaagtcaaaa      2760
     ggaatcctaa tggtagtatt aaccgacaca aggctagact ggttgtgcgc ggtttcaacc      2820
     agaggccagg tgtggatttc ctggaaactt ttagccctgt ggtacgattc gatactcttc      2880
     ggtcggtgct aagtgttgca gccactgagc atttgaaact cgctcaattt gacgtgaaga      2940
     cggcgtttct taacgggaac ctatctgagg acatttacat gacacaaccc gagggattcg      3000
     cagatggtag caatcgagtg tgcaagctga aacggagctt gtacggactc aagcagtcac      3060
     cccgctgctg gaactataaa ttcaaagagg tcgtgatggg acttggtatg acagagagta      3120
     gtgcagaccc ttgtttattc gtcaggagtg tcaatggtaa caagttgtta gtggttctgt      3180
     atgttgatga cggattggtg gcagcgacaa gacagagtga cattgataaa ttcttgaggg      3240
     agttacggtc aaggttcaaa attacaattg agagttttgg ttgcttcttg aatctgcaaa      3300
     ttgctcagga tgctgatggt tcaataacaa tccatcaaca aggttatgcc gagacagtgc      3360
     tgcgtcgctt caaaatggat ggagcaaacc ctgtgtccac tcctattgat cagtatattc      3420
     atcagaatac tgctgatgta gttctgtcat cggcgccgta tcgtgaggca gttggttgtc      3480
     ttatgtacct ggcagtggca acccggccag atattgtttt tgctgtcaac tatgcatcgc      3540
     agttcttgga gaaaccggag atgaagcact gggaattggt gaagaggatc ttacggtacg      3600
     tgcgaggatc atcatctacg gggattcgct attcgacgag cttggcgtct ggagagctgc      3660
     atgtatatag tgacgctgat tatgcaagtg atccgaaaac gcgtaaatct gtcagtggca      3720
     tgatcagcat gtattgtggc ggtgccatta cgtgggcgag taatcggcaa aagtgtgtca      3780
     gtctctcgac aaccgaggct gaatacgtgg ctgcgtgtga agcggcgaaa gaagcagtgt      3840
     ggttaaagta tctatttgag gacatttcgc ctttaaagtc cgtgccaacg ttgatcgtag      3900
     atagtaccag tgcgatgaaa ttgtctaaaa accctgaatt tcacaagaaa agtaagcaca      3960
     ttgatgtgcg ttaccactat ttgcgagatc aagttgtaaa tgatcgtttg tgtatgacgt      4020
     atgtgtgtag taagcagcaa gtagctgata tttgtacgaa accgattcca cgagttcagt      4080
     tttgctactt gagatctctc attggaatgt attaaacagt tttttttgcg tttgtattgt      4140
     ttaatagtct ttcggttatt aaaagagaga tcaatcatct taaattgtag gggaagtat       4199
//
ID   Copia-23_SI-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   AEAQ01023869;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-23_SI_;
KW   Copia-23_SI-I; Copia-23_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-293
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023869; Positions     482     190.
XX
SQ   Sequence 293 BP; 71 A; 50 C; 64 G; 108 T; 0 other;
     tggagagtaa caattaaaga tgtcaagtcc gttcaatttc actcattgta tatgcttgtg        60
     tctgattggt atgagagatg aacaaggagc gcactctgtc gtgagatgat gcaatgatgt       120
     gtgactgtaa aaggagttag gtaacgtcgc gtctccttct tcgtcgtgtc gtgtcgagtc       180
     gagacgattc tttgtattaa ctttttgttt agttttccag ttgtcttaat taaatctttt       240
     cacttgtagt cattgttcag ttttcctctc tatgcagatc agataacctt aca              293
//
ID   Copia-24_AA-I repbase;    DNA;    INV; 4101 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 24.08, Created)
DT   15-APR-2019 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4101
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4101
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1422-1422 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 4101 BP; 1172 A; 865 C; 1136 G; 926 T; 2 other;
     aggttatggg cscagagcgt aggccatagc tgaakaatag taaatcaaaa ggaagttttt        60
     ctggtgtgcc caacatggtt cttccgaggg gcgattcaag ttctcaaggc ggtaggagta       120
     ctggtggcgg atcgagagga atcggcgaag gagatggcgc ctcgaccagt ggtgttggtg       180
     tgcggccagc tgcgccggtg cgatcgtttg gaaacgcagt tagtctaccg gccgtggaga       240
     aattgaaagg acgccagaat tacgcctcct ggtcctttgc aatgaagatg atcctcatac       300
     gcgaagggac gtggcgtgca gtgaaaccgg ctgaaaacca ggacgtggat ccggagatgt       360
     gcgagcgggc gttggcgacc atttgtttaa gtttggagaa gcagaattac agtctggtca       420
     agaccgcgaa gacatcaaaa gaagcatggg acaagctaca gcaagcgttc caggacaacg       480
     gactcatccg aagattcgga cttctggaca agctgacatc catcaaactc gaagaatgtg       540
     aatcggtcga ggattacgtg gatcagctgg tgacgacggc gaacgatttg agtgaaatag       600
     gattcgaagt caacaatcag tggcttgctt ccttgctgct caaaggactt ccggagtatt       660
     ataacccgat gattatggga cttcaagctt ccggaattga gctcacagct gacgtggtga       720
     aaaccaaact tattcaagac gtgaagtggc cgttgaatgc ttcaagtacc ggaggaggag       780
     ctctttatac gaaaccgaaa tcaaggcatc cgaaggcaga taaaaagaaa ggagtttgct       840
     tcaattgtaa caagccgggc catttttcgg tgagttgccc ccagaagtcg atgtcgtcca       900
     agccaaaagg caaggctctt tgtactacac tggcggttgg aaacggaagc gaagattgct       960
     ggtttttcga ttccggagcg acatcccata tgacgcggac tcaagaagga tttgtcaagc      1020
     aaatggattg gatacatccg atcaacactg cgggtagcca gcgaatcaaa tctgtagcga      1080
     aagggacggt taatctggag ctggatgaag gtccgattga agtcaaggaa gtcttgatgg      1140
     tgccggagtt gtcaaccaat cttttgtcca tcagtaagat ctgcgagaag aatatgacgg      1200
     tgctgttcaa gaacgatggc tgcgaggtac gtgacgaaaa tggcaacata gttgtttctg      1260
     gaattcaaga ggacggaatg tacaagctgc ccacgaagag aattcagaaa gcgtgcgtga      1320
     tatccgaggt cgagttgtgg catcgacgac taggtcatct gagcaggcag ttcatgggaa      1380
     aaacgacctc gctggtgaat ggactggagt tgcggatgaa cgacatgccc gattgcatct      1440
     cttgtgctca aggtaaacag agtagaaatt ctttccattc cagtacttcc agagcgacag      1500
     atgttttgga tctggtacac tctgacgtgt gcggtccgat cgaggtccca tcgattggtg      1560
     ggagccggta ttttgtaaca tttgttgatg atgcgagcca caaggtgttc ctatatttcg      1620
     ttgaatccaa gacccaagtg aaggaggttt atgaacagtt caaggcactg gttgagcgac      1680
     aaacgggacg aaagctcaag attctccgaa ccgataatgg ggtagaatat gtcaactcgt      1740
     cgttgaagaa atccatgcag caggatggag tggttcatca aacaacatgc ccttacactc      1800
     cggaacagaa cggcacagcg gagcgtatga accgtacgct ggtcgaaaaa gcgagatcca      1860
     tgttaaacga cgctaggctg ccgaagaagt tttgggcgga ggccgtatct accgcggcgt      1920
     acttggtgaa caggagttac actcgagcgt tggaagccaa aaccccagaa gaagcctggt      1980
     cgcagaagaa gccaaatctg aagcacctac gagtttttgg atcccgagtt atggttcatt      2040
     ctccaaagca gaaacggaag aaattcgacc cgaagtccgt agaaggcatc tttgtaggat      2100
     acggtgaagg ttcaaaaggt tttcgtgtct acctcccatc aacaaatgaa gtgaccgtta      2160
     gtcgagacat agtgttcatc aacgaagggc ggccgtcaat gacgtcatca acagaaggac      2220
     cagatcaacc agtcgaattc atggagttgc attcctggct ggacgttgag gagaattttg      2280
     aaactgaagt tcaagaaacc aacaacgtag tagtttctgg tcgtaacctc aacgtgacgt      2340
     ccgagagtga gcttgccgtc gcgctcccac cgcaacttga aagatccgct gaagagcagc      2400
     atggattgag gcgcagcggt cgggagcgcc aacccacagg caagtattca gattttgtgt      2460
     actttagttc ggttactgtt cccgacgatt ttacagaact cagcccggtg aatgctgatc      2520
     cggagcgaac tggttcaact gatgatccta cgaactatgc ggaggttgta cagcgaccag      2580
     atcgagatcg gtggatgaag gccatgcgag aagagttgga cgctctgaat gaaaacgata      2640
     cctgggaact gacggactta ccaaagggca agaaggcgat tcgcaataag tgggtgttta      2700
     aaacgaagta cggccccaac ggagaagtgg atcgattcaa ggcacggctg gtcatcaaag      2760
     gctgctccca acgttatggt gtcgattatg acgaggtcta tgctcctgtg gtgcgttatt      2820
     cgacgatcag atatctcatg gcagtcgcag tggaacacaa tctggagata gaacaaatgg      2880
     acgctgtgag tgcttttctc caaggaaaat tgacaggcga gacgatttac atggaacaac      2940
     cagacggttt tgccgaagat cctaccaaag tttgtcgact gaagagagcc ctctatggct      3000
     tgaagcaatc aagtcgcgtt tggaatcttc agctagacaa ggcattgaag gaatttggat      3060
     tggagcaatc ggcaatagat ccctgtttgt atttcaagat agaaggtcgg cggatgattt      3120
     ttgtaactat ttacgtggac gattttctcc tgttttcaaa tgatcaagca ctgaagaaga      3180
     aactgaagga atttttgaat taccatttca agatgaagga tttaggagaa gcgaagctgt      3240
     gtctcggact ccggataacg cgagatcgtt ccaatggaag gctttaccta gatcagcggc      3300
     agtatctgga agacatcctg gaccggttca acatggtgaa ctgtaattcg gtttcgactc      3360
     ctgcggaccc ttcagcgaag ctagacaaga cgatgtgccc aaccaaaccg gaagaaattg      3420
     aagagatgcg gacggttcca tacaaggaag cggtaggctg cttgatgtac tctgcgtgcg      3480
     caacaaggcc ggatatagcg tttgccgtga acatggtcag caagttcagt aacaaccctg      3540
     gacgtcgtca ttgggaagcg gtaaaacgta tattgcgata tctaaaaggc acgctgaacc      3600
     accgtttaca attttcaaaa agcgacaatc ctactctaac ggcatattcc gattcggatt      3660
     ggggaggaga tgcagatgag cgaaaatcta caacggggta cgtttttacc aagatgggag      3720
     gagcggtatc ctggaactcc aagcggcagg acgttgtggc tttatcgacg tgtgaagccg      3780
     aatatattgc gctatcaaga acagcccaag aagctctctg gtggcagcaa ttaatcaagc      3840
     aattcgacga acagcaagtg atcccgatca tgtgcgataa ccagtcggcg atctgcgtgg      3900
     ccaaaaatca aggtttcaat ccgaggacga agcacattga tattcgttac cattttgtac      3960
     gggagacgct caaccgagga aatgttaccc tggactacgt ttccacgaag cagcaaccgg      4020
     cagacggatt tacaaaacct ctaaccaagc agaatcatga acatttcaag aaaatgcttg      4080
     ggatcgtagg ttaaggggga g                                                4101
//
ID   Copia-24_AA-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   15-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_AA_;
KW   Copia-24_AA-I; Copia-24_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-158
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-158
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: updated to consensus.
XX
SQ   Sequence 158 BP; 51 A; 36 C; 22 G; 49 T; 0 other;
     tattgagatg tgagtaaatt gtagtaacct acgaccggct cattatagcc atacctaccc        60
     tagcaacgat tgtttagttg tacaaacaag caaataaatt ttcattcgtt cttcagacta       120
     cagcctaacc acacgtattt tattaacact ctctcaag                               158
//
ID   Copia-24_CQ-I repbase;    DNA;    INV; 2270 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_CQ_;
KW   Copia-24_CQ-LTR; Copia-24_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2270
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 363-363 (2011).
XX
DR   [2] (Consensus)
XX
CC   'CTCGA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..2177
FT                 /product="Copia-24_CQ-I_1p"
FT                 /translation="MEHEFVSHAFDGTNFSCWSFRIEADLKAQKLHHCIER
FT                 TLEEESFFTVVAEEGVAERVRKEALQKSRKVEDEKCKLFLLKTIAEPQREV
FT                 VRGMSSPKLMWEALKELSDRKAVRAGSNGTFPSKCHICGKPGHKKVDCPLK
FT                 KKAKHAAGSVQQPKKWKAHAAESSAGAKEDVPFEPEAEEANSEEADGKFRW
FT                 VLDSDVCEHMVGDRNLLVNVRRMETPKVVNVAEAGVPLESRYVGEVKMKAV
FT                 VGRRTLNCTVHDVLYVPGLTQNLFSVEKEAERGMEVSFGRNHARISKDGDV
FT                 KCTATRNGSLYVLDVELEMCGSAVVAELESQEEVPEDKMCTDDELDSEQSD
FT                 PDDTVQEEEEVPQENLVSVPEENAVPDLEETAGERRGRVEKHPAGFSELEL
FT                 ERKWAARPDHELKLKWPARPDHDVCVAVALNTEAYVDEILDTNEALQKRDD
FT                 WPLWKRAIDDELRSLEKNRKNRKWDLVEAPAGRRVVCCKCVFRIKKEEDGT
FT                 AARYKARLVVTGCSQRAGYDYKETYARNVVRELPAGAVEQLHQTKERKPPG
FT                 FERGIKVRKMNKSLVGAKALQNRKKRYRRRMLFKKISKLEGAQTERDRRSA
FT                 ARSRSPLNIRFCLRTDRNRHQLSGGKSRGEQVHYEEDLQDRKRMNLGASAT
FT                 TTSVIAGQEELTKLPVPPDK"
XX
SQ   Sequence 2270 BP; 609 A; 512 C; 758 G; 391 T; 0 other;
     ggttgtgtgg cccagcaaat cgcgtggcgc gtcgccaagg aaaccgcgaa cggaaggaaa        60
     aagttttttc catgtgcgcg aacgtccggg aaggtgacgc aattttcgcg atcggaaagt       120
     gagttgaatt ttttgggaag tgagacgcga aaagaacgtt ttctagtgcg atggagcacg       180
     aatttgtgtc gcacgcgttc gacgggacga atttctcgtg ctggagtttc cggatcgaag       240
     cggatttgaa ggcgcagaaa ctccaccact gtatcgagcg gacgctggag gaggaatcgt       300
     ttttcacggt ggttgcggag gaaggcgtgg cggagcgggt gcggaaggaa gcactgcaga       360
     agtcccggaa ggtagaggac gaaaagtgca aattgttcct gctcaagacg atcgccgagc       420
     cgcaaaggga ggtcgtacgt ggaatgtcat cgccgaagtt gatgtgggaa gccctgaagg       480
     aattgtcaga ccggaaagca gtgcgtgccg gaagtaacgg aacgtttccg tccaagtgtc       540
     acatctgcgg gaaaccgggg cacaagaagg tggactgccc gctcaagaag aaggcgaaac       600
     acgctgccgg aagtgtgcag cagccgaaga agtggaaggc gcatgcggcg gaaagcagtg       660
     ccggtgccaa ggaagacgtg ccgttcgagc cagaagcgga agaagccaac agtgaggaag       720
     cagacggaaa gttccggtgg gtgctggaca gtgatgtttg cgagcacatg gttggtgatc       780
     ggaacctgct ggtaaacgtg cgtcggatgg aaaccccgaa ggttgtcaac gtggcggaag       840
     caggagtgcc gctcgaaagt cgctacgtcg gagaggtaaa aatgaaggcc gtcgtcggaa       900
     gaaggacgtt gaactgcacg gttcacgacg tcctgtacgt gcctggattg acgcagaacc       960
     tattctccgt ggagaaggag gctgagcgcg gaatggaagt ctcgtttggc cggaaccatg      1020
     ctcgcatctc aaaggacgga gatgtcaagt gcactgcaac gcggaacgga agtttgtacg      1080
     tgcttgacgt agagctcgag atgtgtggat cggccgtggt tgctgagttg gagagtcaag      1140
     aagaagtgcc ggaagataaa atgtgcacgg acgatgaact tgacagtgaa caatcagatc      1200
     cagatgacac agtgcaagaa gaagaagaag tgcctcaaga aaacctagtg tcagtgccgg      1260
     aagagaacgc agtaccagat ctggaggaaa ctgcgggaga aagaagaggt cgcgtggaga      1320
     agcatccggc tgggttctcc gaactcgagt tggagcggaa gtgggcggca aggcccgacc      1380
     acgagttgaa gctgaagtgg ccggcaaggc ccgaccatga cgtctgcgtc gccgttgcgt      1440
     tgaacaccga ggcctacgtg gacgagattc tcgacaccaa tgaagcgctg cagaaacgcg      1500
     acgactggcc gctgtggaag cgcgctatcg acgacgagtt gcggtcgcta gagaagaacc      1560
     ggaagaaccg caagtgggac ctcgtcgaag ctcctgctgg tcgccgagtt gtgtgctgca      1620
     agtgcgtgtt caggatcaag aaggaagaag acggtaccgc tgccaggtac aaagctcgtc      1680
     tcgtcgtgac ggggtgctcg caacgtgcgg ggtacgacta caaagaaacg tacgcccgaa      1740
     acgtcgttcg tgagctgccg gcaggagcgg tggaacagct gcaccagaca aaagaacgga      1800
     agcctccagg atttgagagg gggattaagg tgcgcaagat gaacaaatcg ctggttggtg      1860
     cgaaggcgct gcagaaccgg aaaaagcggt acaggcgtcg aatgctgttc aagaagatct      1920
     cgaagcttga aggagcgcaa acggaacgag accgtcgatc cgctgctagg agtcgatcgc      1980
     cactcaacat tcggttttgc ctgcgaaccg atcggaaccg ccatcaactc tccggtggta      2040
     agtcaagagg agagcaagta cactacgaag aagatctaca agaccggaag cggatgaacc      2100
     tcggagcatc cgcaacaaca acatccgtga tagctggcca ggaagaactc accaagttgc      2160
     cagttcctcc tgacaagtga ccagctcgcc gatgtgttaa ccaagggccg aagctgtttc      2220
     gaccgagaag ccaacgagaa gcttcgaagc actttaggtt tgagaggggg                 2270
//
ID   Copia-24_CQ-LTR repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_CQ_;
KW   Copia-24_CQ-I; Copia-24_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-144
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 364-364 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 144 BP; 35 A; 40 C; 27 G; 42 T; 0 other;
     tgttggaagt caaccctaag tgcagccctg gtgattagat ttagttagct ttaggcgcag        60
     taggctttgc cacgcgcatt cttttatata aacaccaccc actctgtgtt aaccctcttt       120
     ccccgaataa acgccaactc gtca                                              144
//
ID   Copia-24_SI-I repbase;    DNA;    INV; 4240 BP.
XX
AC   AEAQ01023605;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_SI_;
KW   Copia-24_SI-LTR; Copia-24_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4240
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023605; Positions    5040     801.
XX
CC   Positions [1645-2181] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..4170
FT                 /product="Copia-24_SI-I_1p"
FT                 /translation="MADSTIDLKNITKFDGTNFQLWKFQMKIVLTASGLMD
FT                 IADGTTPKPEPATDNYAAWNTKNAKAMCILSSAVEYSQLEYLVTCEDAAEM
FT                 WAKLSSIHEQKSATNKLTLMTKFHEYKMASADSVAQHVAKIENMARQLKDV
FT                 GEELSEVMIMAKILGTLPQKFSPLITAWDSVSQPNQTKDNLIERLLIEEKR
FT                 LSNFEEATTALATIKIHKKSGAAHASRSRKETQTTKDSRYEKEEISCRYCR
FT                 KRGHPEKRCYKKRDDIRNKRDSDNSAKEKDDNTANFGAFTISNDDFASRML
FT                 KHDSKEVWLLDSGASKHMCFRREWFSELDNSYRESVSLGDNSTCEVMGRGT
FT                 IHIKMYVNGKWLNGKMDDVLYIPSLRKNLFSTGICTSKGYILKFESNNVKI
FT                 IRDKSVMACGIKQHNNLFRLLIKVDIVNEANAVSSNSLKTWHERLGHINCQ
FT                 SLREMIKKNLINGVSLSNSDKFFCESCQFGKQHRLPFKSEKRFRDRRIGEF
FT                 IHTDVCGPMSEASIGGSRYFLLFKDDKSSFRRIYFLTYKSETFEKFKEFEE
FT                 LIFNKFGTRIKTVRADNGTEFCNNNMRNYFARHGITLQTSAPYTHEQNGRS
FT                 EREIRTITECARTMLQAKNLPTRFWAEAVNTAVYILNRCISSQTREITPFE
FT                 LWHKEKPNLSHIRKFGSDAFAHVTKEHRKKWDPKSKKLILVGYEGESTNCR
FT                 LFDPLTNKIIITRDVIINENSDNDSNIKSDNASIKITSQDENIFEPLQNIQ
FT                 NDSTEPINEIDNSDRIKPVANTYNLRNRQSVKPPERYEASIAILDEPATFI
FT                 EATTGENAIQWKSAIKKELEAHEKNNTWTLVSPPKDYNIIGCKWVFKIKEN
FT                 PSENVIRFKARLCAKGFSQKAGIDFTETFSPVVRYDSIRTLLAVAAHENLE
FT                 IGQFDIKTAFINGILNEEIYMRLPEGIETDDHNVVCKLNKALYGLKQAARC
FT                 WNKQFDEFLQKFNFQQSNADQCVYLGQFENEKVYLALYVDDGLILTSSKDV
FT                 LNKILQTLSSAFETTTGNGKTFIGMEIERDRLNNTIFIHQKHYINRLLARF
FT                 GMFDANPVSIPADHNVNLRSADTEDMTCCNIPYREAVGALLFLASVSRPDI
FT                 SYAVGIVSRYLNNYDATHWNAVKRIFKYLLKTPEFGIVYNNSDNKFAIKLT
FT                 GYCDSDYAADIDTRRSTSGFIFKITNGPVTWSSKRQATVSLSTTEAEYIAA
FT                 SMATKEAIWLRKFLSDIGRPCDNATTLMIDNQSAIKLIKNAEFHSRTKHID
FT                 VRYHFIREKLKNLDINVEYISSQDQLADILTKGLPRDRFKYLRNKIGIIDR
FT                 QDALNS"
XX
SQ   Sequence 4240 BP; 1454 A; 908 C; 847 G; 1031 T; 0 other;
     acaggttatg ggcccaggcg acgcaatcgg tgaatatcag tatctataaa cgagagagtc        60
     agcaaatcta accgattcga gagccgaggc gcagcaacgc catcgtcctt tcgcacgaca       120
     ctgcacacgt gatcgaagaa ttttttttta cgctctcaga agccttccag tgatcttttc       180
     tataaacgac actttgtgtg aatcctcttt attacaatgg cagacagtac aatcgatctg       240
     aaaaacataa ccaaattcga cggtacaaat ttccaattat ggaaattcca aatgaagatc       300
     gtcctcacgg caagcggctt gatggacatc gcagatggaa cgaccccaaa acccgagcct       360
     gcgacagaca attacgcagc atggaataca aagaatgcca aggccatgtg cattctatca       420
     tcggcggtag aatattcgca gctcgaatat ttagtcacgt gcgaggacgc cgccgaaatg       480
     tgggctaaac tcagttccat ccacgagcaa aaaagtgcca cgaacaagtt aacgctaatg       540
     acaaaattcc acgaatacaa gatggcatcg gccgactctg tcgcacagca cgttgccaaa       600
     atagaaaata tggctagaca attaaaggac gtcggtgagg aactatccga agtcatgatt       660
     atggcaaaaa ttctcggcac cctcccacaa aaattcagtc cgttgataac cgcctgggat       720
     agcgtcagtc agcctaatca aaccaaagac aatctcatag aacgtctcct catagaggag       780
     aaacgtttat caaatttcga ggaagcgacg actgccttag ccacgatcaa aattcacaag       840
     aaaagcggcg ctgcacacgc cagcagatca aggaaggaaa cgcaaacaac aaaagactcg       900
     aggtacgaga aagaagaaat ctcctgccgg tattgtcgca aacgaggtca tccagagaag       960
     cgatgctaca agaagcgcga cgacatcaga aacaaaagag atagcgacaa ctcagcgaag      1020
     gagaaggatg acaacacggc caatttcggt gcgttcacga tatccaatga cgacttcgcg      1080
     tcacgcatgc tcaaacacga ttcaaaggag gtatggttat tagatagcgg tgcttcaaag      1140
     cacatgtgtt tccgccgcga atggttcagc gaattagaca atagttaccg cgaatctgta      1200
     agtctcggag acaactcgac atgcgaggta atgggacgcg gtacgattca tattaaaatg      1260
     tatgtcaacg gcaagtggct taacggcaaa atggatgatg tactatacat accatcatta      1320
     cgcaaaaatc ttttttcaac cggtatctgt acttcaaaag gttatatttt aaaatttgaa      1380
     tcgaacaatg taaaaattat tcgcgataaa tcagtgatgg cttgcggaat caaacaacat      1440
     aataatttat tccgattatt aattaaagtc gacatcgtca atgaagcaaa tgcagtctca      1500
     agtaatagtt taaaaacttg gcacgaacga ttaggccaca taaattgtca atcacttcgc      1560
     gaaatgatta agaaaaattt aattaacggc gtttcattat ccaatagtga taagttcttc      1620
     tgtgaaagct gtcaattcgg taagcaacat cgtttaccat tcaagtccga aaagagattc      1680
     cgtgacagga gaataggtga atttatccat acggacgtat gcggtccaat gtccgaagca      1740
     tctatcggag gctctagata ttttttactt ttcaaagacg acaagtcaag tttccgtcgt      1800
     atttattttc taacgtataa aagcgaaact ttcgaaaaat tcaaagaatt cgaagaatta      1860
     atattcaata aattcggaac acgaataaag accgtcagag ccgataatgg taccgaattt      1920
     tgcaacaaca atatgcgcaa ttattttgcc cgtcacggaa tcacccttca gacatccgct      1980
     ccgtacactc acgagcaaaa cggtcgttca gagagggaaa ttaggacaat tacagaatgt      2040
     gcccggacaa tgctacaagc caaaaatttg cccacgcgtt tttgggctga ggcagtcaat      2100
     acagccgttt acattttaaa tcgttgcatc tcttcacaaa cgcgcgagat cactcctttc      2160
     gagttatggc acaaagaaaa accgaactta tcacacatac gaaaattcgg tagcgacgca      2220
     tttgcgcatg taactaagga acatagaaag aaatgggacc ccaagtccaa gaaattaatt      2280
     ctagtaggct atgaaggcga atctactaac tgtcggcttt tcgatccatt aacaaataaa      2340
     attattataa caagggatgt aataattaac gaaaattcgg ataacgattc aaatataaaa      2400
     tctgacaatg catctataaa aattacatct caagatgaaa atatttttga acctcttcaa      2460
     aatatacaga atgactcaac agagccaatt aatgaaattg acaactcgga tcgaattaaa      2520
     cccgtcgcga acacttataa cttaagaaac cgacagtcag ttaaaccgcc agaacgttat      2580
     gaggcgagca ttgcaatact tgacgaacca gcaacgttta tcgaggcaac tacaggggaa      2640
     aacgcgattc aatggaaatc agcaattaaa aaggagcttg aagctcacga aaagaataac      2700
     acgtggactt tagtttctcc gcctaaagat tataatataa tcggatgcaa atgggtattc      2760
     aaaataaaag aaaatccctc agaaaatgtc attcgtttca aggcacgcct atgtgcaaaa      2820
     ggcttttcac aaaaagccgg gatagacttt accgaaactt tctcccctgt agttcgctac      2880
     gactcaattc gtacgctcct ggcggttgcc gcgcatgaaa atttagaaat cggtcaattc      2940
     gacattaaaa cagccttcat taacggaatt ctaaacgagg aaatttatat gcgactaccc      3000
     gaaggtatag aaacagacga tcacaatgta gtatgcaagt tgaacaaagc cttatacggt      3060
     ctcaaacaag cagcaagatg ctggaacaaa cagttcgacg aatttctaca aaaatttaac      3120
     tttcaacaaa gcaacgccga tcagtgtgtg tatcttggtc aattcgagaa cgaaaaggta      3180
     taccttgcac tttacgtgga cgatggactc attctaacct catcaaaaga cgtattgaat      3240
     aaaattttgc aaaccttaag ttccgctttc gaaacgacca cagggaacgg gaaaacattt      3300
     atcggaatgg agatcgagcg cgatcgactg aataacacta tttttatcca tcagaaacat      3360
     tatattaatc gtctgttggc gcgttttggc atgttcgacg cgaaccctgt atccattcct      3420
     gccgaccata atgtaaatct gcgatccgca gataccgagg atatgacttg ctgtaacata      3480
     ccatatcgtg aagctgtcgg agccttactg tttttagcgt ccgtatcgag gcccgatatc      3540
     tcttacgcag tcggaatagt cagtagatac ttaaataatt acgacgcaac tcactggaac      3600
     gcagtgaagc gtattttcaa atacttactg aaaactccag aattcggcat tgtatacaat      3660
     aatagtgata acaaatttgc tataaagtta acaggctatt gcgactccga ttatgccgcg      3720
     gatattgaca cacgccgttc gaccagcggg tttattttta aaattacgaa cggtccagtc      3780
     acttggagtt ccaagcgtca agcaacagta agtctcagca caaccgaagc cgagtatatc      3840
     gccgcaagca tggcgaccaa agaggcgatt tggttaagaa aattcctgtc tgatatcgga      3900
     cgtccttgtg acaatgcgac gacactcatg atagacaatc aaagcgcaat aaagcttatc      3960
     aaaaacgcag aatttcacag tcgcactaaa cacattgacg tgcgttatca ttttatcaga      4020
     gaaaagctca aaaatctcga tatcaatgtg gaatatattt ccagtcaaga ccaattagcg      4080
     gatattctca cgaaaggtct accacgagat agattcaaat acttgcgaaa caaaatcggc      4140
     attatagacc gacaggacgc tttaaactca taaaccatag ccgatttttt tttgtttgtt      4200
     gttcaattat taataccata aaatgtgcaa gcggggggag                            4240
//
ID   Copia-24_SI-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   AEAQ01023605;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-24_SI_;
KW   Copia-24_SI-I; Copia-24_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023605; Positions     800     496.
XX
SQ   Sequence 305 BP; 78 A; 79 C; 55 G; 93 T; 0 other;
     tgttaaaata gctctcacat ttatttcctt tatcttacta accaggcgca ttttgtaatt        60
     cgcggtagtt atacatcgac agaccgatct atgatcggta gtatgcccgt acggcggcgc       120
     ttcggttctg cgcaaccaga aaaggcgctg aatgtctctc ccccttctct tcttactctc       180
     ttgcgtgcgt tcacgctaac gtcactttcg ttgtatgtat atccaaccga aaggtacatt       240
     ataataaaac agtgttcaag atacaaagaa ggcgttagat ccattcacca catccacctt       300
     gtcca                                                                   305
//
ID   Copia-25_AA-I repbase;    DNA;    INV; 4216 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.01, Created)
DT   12-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 104-104 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..4206
FT                 /product="Copia-25_AA-I_1p"
FT                 /translation="MNSGSQAGSSGSSVQGISSLPGIERLSGRENWATWKF
FT                 AVQTYLELEDLWEAVKPALREDGTYEAVEPAKDRKARAKVILLLEPVNYVH
FT                 VKEAKTAQEVWGNLERAFEDSGLTRRIGLLHKLVKTDLMSCSSMSEYVNRI
FT                 ISTAHQLNGIGFNISEEWIGALLLCGLPEEYRPMIMALENSGIRITGDAIK
FT                 TKLLQEVQIPSADAALLSKGKRNHGNPSHGNDSNHNRGNQSKQSTSSKGPK
FT                 CRKCHNYGHIAKDCRSTKKGDAFCTVLSTFEAASDADWYFDSGATTHMTRS
FT                 KALLQNVKPSSGTVVAANKAAMKIEGTGTAALKPVCKDQGSEISVSDVHYI
FT                 PQLSVNLLSVNKIVSKGYSMMFDNAGCKVMNSTGDLVATGCHENGLFKLEQ
FT                 HERSGAGKALACPTDDSMDVWHRRMGHLSEANLKKLASGMVSGMNFNSSSI
FT                 SDCSVCAKGKQSRLPFGKKGSRAKELLEVVHSDICGPMEVPSLGGSRYYIL
FT                 FVDDKSRRMFVYFLRTKCEGEVLRVFQAFHVMAERQTGSKIKTIRTDNGLE
FT                 YTNRKFQSYLEKFGIRHQRTNDYTPQQNGMAERANRTIVERARCMLFEANL
FT                 QKSFWAEAVSTAVYLINRSPTRGHGMTPEECWSGKKPDLSNIRIYGAKVMV
FT                 HVPKPKRRKWDAKAHECRLVGFDEDTKGYRVYDPATKTISRSRDVTFINES
FT                 DAGTPAATIKSSKPLIIKLDVEEAVSFPNPEEATGGHPTPADGATGSVKVD
FT                 ESDWDEEEFEEAASNISSSSTDTVTDITVLPPRQTSNPPPSQVLRRSGREH
FT                 KLPGKYRDFAISSKGLPCSRFSQIPAIDDNNPLNSDVASGEASGSSLGPER
FT                 SSQFTGVASQQQSDEQATISDDPTTHQQAMSRDDSDKWKVAMQEEFDAHMA
FT                 NETWTLTELPEDRKAIRCKWVYKTKLDANGNLDRHKARLVIKGFSQRKGVD
FT                 YDETYSPVVRHSSLRYLFAMAAKHNMEVQQMDAVTAFLQGELTEEIFMEQP
FT                 PLFVDRRNPSLVCRLNKALYGLKQSSRVWNQKLDHMLKQFGLNQAKYDPCV
FT                 YYRIEGSSMIFVAVYVDDVMIFSNDSGWIEQTKAFLSGHFRMKDLGAAKNC
FT                 LGIRITRTDRTIALDQEAYVEAMLAKFNMANCKPAKVPMTDKLTKDMSPKT
FT                 DQEAKQMTNIPYQEAVGSLMYLAQCTRPDILYAVNQLSRYNSNPGMQHWGA
FT                 VKTLFRYLRGTASMKLVYRKDGDNNINGYSDADWAADVDDRKSTTGYVFTL
FT                 QGAAISWCCKRQPTIALSTCEAEYMALSATVQEASWWQGLTAQFGATGPIS
FT                 INCDNQSTIAIAKNGGYNPRTKHIDIRHHYIRDALERRIINIKYIESDNQL
FT                 ADGLTKPLPRMKLEKNREAIGVLA"
XX
SQ   Sequence 4216 BP; 1175 A; 1017 C; 1171 G; 853 T; 0 other;
     ggttatgggc ctatcgtttt caagccgaag ctctgaaaat tcaagatgaa ttccggaagt        60
     caagcaggat caagcggcag ttccgtgcaa gggatttcaa gtctgccagg aatcgagcgg       120
     ttatccggac gagagaactg ggctacgtgg aagtttgccg ttcaaacgta cctcgagctg       180
     gaagatctct gggaagccgt caagcctgcg ctgagagagg acggaacgta cgaagccgtg       240
     gaacctgcga aggaccggaa agcaagagcc aaggtaattc ttctcctcga accggtgaat       300
     tatgttcacg taaaggaggc gaaaacggca caggaagtgt ggggaaacct ggagcgggcg       360
     ttcgaagatt ccggcctaac caggcggatc ggtctccttc acaagctggt gaaaaccgat       420
     ctgatgagct gttcgtccat gtccgaatac gtaaatcgga taatttccac ggcccatcaa       480
     ctcaacggaa tcggattcaa catttcggag gagtggattg gtgccctgct gctttgcggt       540
     ctgccggagg aatacaggcc aatgatcatg gccctggaaa attctggaat cagaatcacc       600
     ggcgacgcga taaagacgaa gctgcttcaa gaggtgcaaa ttccatcggc tgatgcggcg       660
     ttgttgtcga agggtaaacg taaccatggt aaccccagcc acggcaacga tagcaaccac       720
     aaccgtggaa atcaatcgaa gcaatccaca tcatcgaagg gaccgaaatg taggaagtgt       780
     cacaactacg ggcacattgc gaaggactgc agaagcacga aaaaaggaga cgctttctgc       840
     accgtcctgt ctacgttcga agccgccagt gatgctgact ggtacttcga ttctggagcc       900
     acgactcaca tgacacgaag caaggctctg ttgcagaacg tgaagccgtc cagtggcact       960
     gtggtggccg cgaacaaggc cgctatgaag atcgagggaa caggaaccgc tgctctcaag      1020
     cccgtctgca aggaccaagg aagtgaaata tccgtgagcg atgtccacta cattccacag      1080
     ctgtccgtga atctcctctc cgtcaacaaa atcgtaagta aaggttactc gatgatgttc      1140
     gacaacgctg gctgcaaggt gatgaattcg accggcgacc tagtggctac tggatgccac      1200
     gaaaatggac tattcaagct ggaacagcac gagcgcagcg gagccggcaa ggcgttggct      1260
     tgtccgacgg atgattccat ggacgtttgg catcggcgaa tgggccacct cagcgaggcg      1320
     aatctgaaaa agctagcgag cggtatggtg agtggcatga atttcaattc aagtagcatt      1380
     agtgattgca gcgtgtgcgc caaagggaaa cagtcccgat taccatttgg caaaaagggt      1440
     tcccgagcaa aggaattgtt ggaggtcgtt cactcggata tttgcggtcc gatggaggta      1500
     ccgtcgctag ggggtagcag atactacatc ctgtttgtgg acgacaaatc acgccgcatg      1560
     ttcgtatact tcctacgaac gaaatgcgaa ggtgaagttt tgagggtgtt tcaagctttc      1620
     cacgtgatgg ctgagcggca gaccggttcg aaaatcaaaa ccatccgaac cgacaacggg      1680
     ctggagtata ccaacaggaa attccagagc tatttggaaa agtttggtat ccggcatcag      1740
     cgaacaaatg actacacccc gcagcagaac ggtatggctg agagggcaaa ccggacaatc      1800
     gtcgagcgtg ctaggtgcat gctatttgaa gcaaacttgc aaaaatcgtt ttgggcagaa      1860
     gcggtttcga cggcggtgta cctcatcaat cgatcaccga ctcgcggtca tgggatgaca      1920
     cccgaagaat gctggagcgg aaagaagccg gatttgtcca acattcggat ctatggagca      1980
     aaggtgatgg ttcatgtccc gaaaccgaag cggcgtaagt gggatgcgaa ggcccatgaa      2040
     tgtcgtctgg ttggattcga tgaagacacg aaaggctatc gtgtatacga cccggcaacg      2100
     aagactatat caagaagtcg agatgtaacg ttcatcaatg agagcgacgc cggtacaccg      2160
     gcggcgacaa tcaaaagcag caaaccactg attatcaagc tagacgtaga agaggcggta      2220
     tcgtttccca acccagaaga agctaccggc gggcatccga ctcccgcgga tggtgcaact      2280
     ggttcagtta aagtcgatga aagcgattgg gacgaagaag aattcgaaga agcagcaagc      2340
     aacatcagta gttcttccac agataccgtg actgacatca ccgtgctccc cccacgacaa      2400
     acttcaaatc cacctccgtc acaggtgttg aggcgcagtg gtcgggagca caaacttcca      2460
     ggcaagtata gagattttgc tatttcgagc aaaggcttgc cctgttctcg tttttcccag      2520
     attcctgcaa tcgatgacaa caacccattg aattccgatg tggcgagcgg tgaagcaagc      2580
     ggttcatccc tgggtcctga gcgctcgagc caattcactg gtgtggcctc tcagcagcag      2640
     agtgacgaac aagccacgat ttctgacgac ccgaccacgc atcaacaagc aatgagtcga      2700
     gatgattcgg acaaatggaa ggttgccatg caggaggagt ttgacgctca tatggcgaac      2760
     gaaacgtgga ccttgacgga acttcctgag gataggaagg cgatccgttg caaatgggtc      2820
     tacaaaacga agctggatgc caatggaaac cttgatcgac acaaggcgcg acttgtgatc      2880
     aaagggtttt cgcaacgaaa gggggtagat tatgacgaaa cttactcccc ggtagtccgt      2940
     cacagttcgc tgcgatatct gttcgccatg gcggcgaaac acaatatgga ggttcaacag      3000
     atggatgctg tcaccgcttt tctccaaggt gaactgacgg aagaaatctt catggagcag      3060
     cctccgctgt tcgtcgatcg gcggaatcca tccctggtgt gtcgcctcaa caaggcgcta      3120
     tacgggctga agcagtccag tcgagtctgg aaccagaagc tggaccacat gctgaagcag      3180
     ttcgggctga atcaagcgaa gtacgatccc tgcgtgtact accgcatcga gggtagcagc      3240
     atgatattcg tggcagtcta cgtggatgac gttatgatat tctccaatga cagcggatgg      3300
     attgagcaaa cgaaggcgtt cctgagtggt catttccgga tgaaggatct tggtgcggca      3360
     aagaactgtc ttggaatccg aatcacacgg acggatagaa ccatagcgct tgatcaggaa      3420
     gcgtacgtag aagcgatgct ggcaaagttc aacatggcga actgtaaacc agcgaaggtg      3480
     ccgatgaccg acaagctcac gaaggacatg tctcccaaga cggatcaaga agcgaagcag      3540
     atgaccaaca ttccgtacca ggaagcagtt ggaagcctga tgtacctcgc tcaatgtact      3600
     cggccagaca ttctgtatgc cgtgaatcag ttgagtcggt acaattccaa tcccggaatg      3660
     cagcactggg gtgctgtgaa aaccctgttt cgctacttgc gcggaacagc atcgatgaag      3720
     ttggtgtacc gcaaggatgg cgacaacaac atcaatggtt acagtgatgc agactgggcg      3780
     gccgacgtgg acgacagaaa atccaccacc ggctatgttt tcacgctgca aggggcagct      3840
     atctcgtggt gctgcaagcg ccaaccgacg attgccttat cgacctgcga agcagagtat      3900
     atggcactgt ctgctactgt tcaagaagca tcgtggtggc aaggactcac tgcacaattc      3960
     ggagcgacgg gtccaatatc catcaactgc gacaaccaga gcaccattgc gattgctaag      4020
     aacggtggct acaaccctcg gaccaagcac atcgacatcc gtcaccatta catacgggat      4080
     gcgctggaac gaagaataat aaatatcaaa tacattgaat cggacaatca actcgccgat      4140
     ggcctcacga aaccattacc acgcatgaag cttgaaaaga atcgtgaagc cataggagtc      4200
     ctagcttaag gaggag                                                      4216
//
ID   Copia-25_AA-LTR repbase;    DNA;    INV; 104 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   12-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_AA_;
KW   Copia-25_AA-I; Copia-25_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-104
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 951-951 (2011).
XX
RN   [3]
RP   1-104
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 104 BP; 33 A; 16 C; 14 G; 41 T; 0 other;
     tgttagatat aagtaagcca tgactttggt ttaaataaat ttttcacttt ctgttcacac        60
     gttaaacgaa caagtcgttt tctttcttat ctgaagatac aata                        104
//
ID   Copia-25_CQ-I repbase;    DNA;    INV; 4045 BP.
XX
AC   AAWU01017673;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_CQ_;
KW   Copia-25_CQ-LTR; Copia-25_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4045
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 365-365 (2011).
XX
DR   GenBank; AAWU01017673; Positions   43428   47472.
XX
CC   Positions [1447-1947] - Integrase core
CC   'GGAGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..4044
FT                 /product="Copia-25_CQ-I_1p"
FT                 /translation="MTSEKSDYPIFDGKDFADWKFRLELTLAERELLDHVR
FT                 KEPKVEQLLLDNWVKVDVKAKNVIVKSLGREHSHIVRSEKSAHGMLKALSE
FT                 VFEKSGAVQERHLRMKLNKMKCEEGQPLDVHFAAFDSVVMDLRAAGAAMTE
FT                 TEQVTHLLMSLPRSYEHIVTVLLAMEELTLRKAKARLLNEEVRRSEMNEEE
FT                 PTGRAAFLGAPKKFTGKCWRCNEPGHRAFECPKASGEEARNTEKRRPGPQK
FT                 RAFNLSKREDDRGQEEDTSRAFAFVAARGTESLGSSGHAPREVLWIIDSGC
FT                 TDHMTNDDKLFLVERRLSAVYPVSLAEKGQAIEATKIGFIASTSVVNGREY
FT                 DCHISDVLFAPGLRHNLLSVSRLEKAGFVAVFREGGVELWAGDVLFAEGQR
FT                 RNDLYELKFTVKERQSNVAAAVDTNALWHRRLGHIGMRSINHMVKKGMVTG
FT                 IKPNITDTLGVCEPCVMGKHSRATFHRCERRASRPLELVHTDVCGPITPTT
FT                 WDGKRYFVTFIDDYTHFTIAYLISTKDEVYECLKEYYSMVCAGFGSSVARM
FT                 RCDNGGEYISRRCKEFCKEKGVVLEYTAAYTPEQNGRAERMNRTLVEKARS
FT                 LIYESQLPKEMWGEAIMTALYLTNRSCTVALDDLTPTELWYGKKPDVSNLR
FT                 VFGCRAYAHLPKCKRRKMDAKSEKLIMVGYSGNGYRLWNPEERKVKLSRDV
FT                 IFDEAVLPGKEREPDQDPVSKQIVGEPVPEENAVEHEMTDDEEAATSDDEP
FT                 EGASEAGAPESVEREAAAREADTREAHTRGADVQEADAREAEASEAGRRKS
FT                 ERNKKRPVWHKDYQMDSTALLTNGIEDVPESYNSIEGRRDAADWYAAVRDE
FT                 LNSLTENQTWDVVDLPRGAKVITSKWVFKKKVDKNGDLERLKARLVARGFQ
FT                 QTAGVDYHDTFAPVAKLSTVRFLLAVGIQRSFEFWHMDVTTAFLYGELDET
FT                 IFMKPPPGLDVEAGKVCELKRSLYGLKQSPKCWNNRLHSFLSSLNFERSDA
FT                 DYCLYVRIAHTERLYILLYVDDLLICGNNSSEIAVLKQQLSAEFRMKDLGQ
FT                 LEYFMGMRIRIDDAAGMVTIDQTAFAERILERFGMEACNAVATPLEPGVKF
FT                 DSAESSDEVRTNFRQLIGSLMYLMLGTRPDLCFAINLFSRYQDKATCEHWN
FT                 CVKRVLRYIKGTTGMHLMYTRKDEATPLVGYVDSDWANDPDDRRSTSGYLF
FT                 EVYGNLISWTTKKQGLVTLSTAEAEYVAASQAVCEAIWFKKLFQDVGYPVD
FT                 HPIPVYEDNQACIFISKNPESKRTKHVEVKYHYVREKVWRKEVELRYISTK
FT                 EQKADILTKPLARVAFEKMRLELGLERGG"
XX
SQ   Sequence 4045 BP; 1074 A; 907 C; 1224 G; 840 T; 0 other;
     ggttatggga accagcacga aatgacctcg gaaaagtcgg attatccgat cttcgacggc        60
     aaggacttcg cggactggaa gtttcgcctc gaactgacct tggcggagcg ggagttgctg       120
     gaccacgtta ggaaggagcc taaggtggag caactgctcc tggacaactg ggtgaaggtc       180
     gacgtgaagg cgaaaaatgt catcgtgaag tcgcttggcc gggagcactc gcacatcgtg       240
     cgctcagaga agtccgcgca cgggatgctg aaggccctgt cggaggtttt tgagaaaagt       300
     ggagctgtgc aggagcggca cttgcggatg aagttgaaca agatgaagtg cgaagagggg       360
     cagccactgg atgttcactt tgcggccttt gattcggttg tgatggatct gcgtgccgct       420
     ggagctgcta tgacggagac ggaacaagta acacatctgc tgatgtcgct tcctcgatcg       480
     tacgagcaca tcgtgacggt gcttttggca atggaagagc tcacattgcg gaaggctaag       540
     gccaggttgc tgaatgaaga ggttcggcgc tcagagatga acgaggaaga acccacggga       600
     cgagcagctt ttctcggagc ccccaaaaag ttcacgggaa aatgctggcg ttgcaacgag       660
     ccaggacaca gggcctttga atgcccgaag gctagcggag aggaagcaag aaacacggag       720
     aaaagaaggc cgggcccgca gaaacgggcg ttcaacctca gcaagaggga ggatgatcgc       780
     ggccaggagg aggatacgag ccgagcattt gctttcgtcg cggcgcgagg gactgaatca       840
     cttggcagtt ccggacacgc tccgagagag gtcttgtgga tcatcgactc gggatgtacg       900
     gatcatatga ccaacgatga caagctgttt ctcgtcgagc gtcgactgtc cgcggtgtac       960
     ccggtgtcgc tcgcagagaa gggacaggcc attgaagcga caaagatcgg gttcatcgct      1020
     tccacaagtg tagtcaacgg ccgagaatat gactgtcaca tctcggatgt tcttttcgca      1080
     cctggtttga ggcacaacct cctgtccgtc agcagattgg agaaggctgg atttgttgca      1140
     gtttttcgtg aaggtggcgt tgaactctgg gctggagatg tactttttgc ggaaggacaa      1200
     cgcaggaacg atttgtacga gcttaagttc acggtcaagg agcgtcagtc gaacgtagcg      1260
     gccgcggtgg acacgaacgc gctctggcat cgacgacttg ggcacatagg catgagaagt      1320
     ataaaccata tggtgaagaa aggtatggta accggcatta aaccaaacat tacagacact      1380
     ctgggcgtat gcgaaccgtg tgttatgggc aaacacagtc gagccacctt tcaccggtgt      1440
     gaacgcagag cttccagacc actcgagcta gtgcatacgg acgtgtgcgg tccgataact      1500
     ccaacaacgt gggacggcaa gaggtatttc gtgacgttta ttgatgatta cactcacttt      1560
     accattgcct atttgatcag cacgaaggat gaggtctacg aatgcttgaa ggagtactac      1620
     tcgatggtct gtgctggatt tggctcgtcc gtggctcgaa tgagatgtga caacggtggt      1680
     gaatacatct cccggcgatg taaggagttc tgcaaggaga aaggagttgt tttggagtat      1740
     acagctgctt atacaccgga gcaaaatggc agagccgaac gaatgaatag aacgctagta      1800
     gagaaggcaa ggtcgctgat ctacgaaagt caactgccga aggagatgtg gggcgaagcg      1860
     attatgacag cattgtacct gacgaaccgc agctgcacag ttgcgctgga tgacctaacc      1920
     ccgactgagc tgtggtacgg gaaaaagcca gatgtgtcga acctcagagt gtttggatgc      1980
     cgtgcctacg cccatttgcc caagtgtaag cgccgcaaga tggatgccaa gagcgaaaag      2040
     ttgatcatgg tcggttactc tggcaacggg taccggctct ggaacccaga ggaaaggaag      2100
     gtaaagctgt cccgagacgt catttttgat gaagcggttc tcccgggaaa agaacgtgag      2160
     cctgatcaag atccagtgag taagcaaatc gttggggaac cggttccaga ggagaatgct      2220
     gttgagcacg agatgacaga tgacgaagag gccgctacga gtgacgacga acctgaaggt      2280
     gcgtctgaag caggtgcacc agaatcagtt gaacgcgaag cagccgcgcg cgaagcggac      2340
     acgcgcgagg cacacacgcg aggagcagac gtacaagaag cagacgcgcg agaagcagaa      2400
     gcgagcgagg caggacgtcg caagtccgaa cgcaacaaga agagacctgt ttggcacaag      2460
     gactaccaaa tggactccac ggcactgttg actaacggta tcgaagatgt tccagaatcg      2520
     tacaactcca tcgaaggaag acgggacgca gctgactggt acgctgcagt tcgtgatgag      2580
     cttaactcgc tgacagaaaa ccaaacgtgg gatgttgtcg atctgccaag aggagccaaa      2640
     gtgattacgt ccaagtgggt gttcaagaag aaggtcgaca agaacggaga tttagaacgc      2700
     ttgaaggcac ggttggtggc aagaggcttc cagcaaaccg ctggtgttga ttaccacgac      2760
     acttttgcac cagtggccaa gctgtcaacg gtgcgtttcc tgctggcagt tgggatacag      2820
     aggagtttcg agttctggca tatggacgta accaccgcat tcttgtacgg tgagctcgac      2880
     gagacgatct tcatgaaacc gccacctggt ctggacgtcg aagctggtaa ggtttgcgaa      2940
     ctgaaacgat cgttgtacgg tttgaaacag tcaccgaagt gctggaacaa cagactccac      3000
     tccttcttga gcagtttgaa cttcgagcgg tctgatgctg attattgcct gtatgtccgt      3060
     atcgcccaca ctgaacgctt gtacatttta ctgtacgttg acgacctcct catttgtggc      3120
     aacaacagca gtgagatagc ggttttgaag caacaacttt ccgccgagtt ccgcatgaaa      3180
     gatcttggcc agctggaata tttcatggga atgcgtatca ggatcgacga tgcggctgga      3240
     atggtaacta ttgatcagac agcgtttgcc gaaagaatcc tggaaagatt cggcatggaa      3300
     gcgtgcaatg cagtggcgac cccactagag ccgggagtca agtttgattc agccgagagc      3360
     tcagatgaag ttcgaacaaa ctttcggcag ctgattggaa gtttgatgta tctgatgctc      3420
     ggaaccagac cagacttgtg cttcgcgatc aatctgttta gtcgctacca ggacaaagca      3480
     acgtgtgaac actggaactg cgtgaaacga gtgctacggt acatcaaagg gacgaccgga      3540
     atgcatctga tgtacacacg gaaggacgaa gcaacccccc tggttggata cgtggattcc      3600
     gactgggcga acgatccaga tgaccgtaga tcaacgagtg gctacttgtt cgaagtttac      3660
     ggcaacttga tatcctggac aaccaagaaa caaggcctgg tgaccttgtc gactgcagaa      3720
     gcggagtatg tggcagcgtc gcaagctgtc tgtgaagcaa tctggtttaa gaagctgttc      3780
     caggacgttg gatatccagt tgatcatccc atcccggtct acgaagacaa tcaagcttgt      3840
     attttcatct cgaagaaccc ggaatcaaag cggacgaagc atgtggaggt taaatatcac      3900
     tacgtgcgag aaaaggtttg gcggaaggag gttgaactgc ggtacatctc gacgaaggaa      3960
     cagaaggcgg atatccttac gaagcccttg gcccgtgtgg ctttcgagaa gatgcggttg      4020
     gagctgggtt tggaaagagg aggag                                            4045
//
ID   Copia-25_CQ-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   AAWU01017673;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_CQ_;
KW   Copia-25_CQ-I; Copia-25_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-165
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 366-366 (2011).
XX
DR   GenBank; AAWU01017673; Positions   43263   43427.
XX
SQ   Sequence 165 BP; 53 A; 37 C; 28 G; 47 T; 0 other;
     tgtaggagaa ggctttccaa tttaacgtgt caccctattt tgatttaagt tggcacccct        60
     gttaacggaa gagcaactgt cactctgaaa aattctacga gcaaaacaac acgcaaaata       120
     tatttgctct cacaccgtaa agtatcgcgt tttattacga ctaca                       165
//
ID   Copia-25_SI-I repbase;    DNA;    INV; 4233 BP.
XX
AC   AEAQ01023844;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_SI_;
KW   Copia-25_SI-LTR; Copia-25_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023844; Positions     209    4441.
XX
CC   Positions [1534-2070] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..2229
FT                 /product="Copia-25_SI-I_1p"
FT                 /translation="MATHEAKTETRITKLSDCNYRTWKTEMKWYLRGKGLL
FT                 DYVLGTVALNENATEAERKVFRTNDDKAMAAIGLHIEPNQQIHIEDCNNAY
FT                 EAWSSLEQVHQPINRIRIMQLKKEFYHIKMKDDETMSSYVARTKIAAANLK
FT                 QAGAEVKDEDLAYAVLAGLPDTYENLNMALASLPDDRFTSVEVIRVLLAEH
FT                 DRRKSRNDDTSAEAMEALQINKGSKGTKSDKTSNASAAEKTATCFNCKKPG
FT                 HYARNCRSKTGNKQAQRDNKSKKNLDAFLVSLNNLDVEESWLLDSGCTHHV
FT                 CKRKDWFQNFHEIEGETINTAANPEKQKGTQLCAKGKGDIVLKTFVGNAQK
FT                 AIVLRNVYYVPHIRKNLMSVSQIERKGKELTIKDGKVRIRNTHTGKIMCEA
FT                 YRKNDLYVVRAEVDLKTEAPAETNFASVKDSSIWHRRFCHVNNRAIEELAT
FT                 HNRVRGLNDTKMDKYKCDACYIGKSTKSPCKKIKRRQSNDVCELIHSDLCG
FT                 PMPVKSWSGNRYFITFTDDYSRKTTVMCIQSKDEVTDCVKKYIARVEREKG
FT                 KKVKRFRTDNGLEYCNRQLTDFFEDTGIKHERSNVETPQMNGIAERINRTL
FT                 MDLVRSMLKSAKLPQRFWAEAVVTAAYIRDRVGHSSIKGDVPLAIWTGRTP
FT                 SVQHLKVYGCLAYANLPRQGRKKLDDRATECFLVGYASQTKGYRLWCQINQ
FT                 T"
FT   CDS           2100..4223
FT                 /product="Copia-25_SI-I_2p"
FT                 /translation="MSSIRKLTKTRSKETRRQSNRMFPSWLCIANQGIPSL
FT                 VSDKSDVITTKHVRFAEDKIGYEWLYRDNTLHRYRYNNTWSESDSESEPEP
FT                 TTTRRHSRSSTKKEESSSSPEDDSENSEESPTKKAISQTKACRIVGETDEP
FT                 PRKVGRPKKKKVIRNPYGRKGKPKSNTDDQSTCDTEDNSEVEIHHVEVVEP
FT                 RDLNDALASPQATEWKRAIREEIKSLEKQGTWEVTELPRGKRCIGCRWTFK
FT                 LKTDSDGKICRFKARLVAQGFSQEKGVDYHETYAPVANFSIIRFMLAATAN
FT                 FSWYTRHIDIKCAYLNGRLDEELYMKVPPLYKVEEGKVVKLKRPIYGLKQS
FT                 GRSWNTEINNFLIENGFKRLRSASCVYCKGRWTILVIYVDDIFIFSRKKAP
FT                 LLEAVQLIKNGYETRDLGDITYALGVKIQRNESGDLQLSQRAYIESLLSRF
FT                 NMEECRAASTPLEHGLKLSKEDSSKSPDEKARMINVPYRQLIGSLMHLALY
FT                 TRPDIMHAVTKLSQYNTDPGQLHWNQAKHILRYLSGTRDYALSYRAEKAPA
FT                 IQIYSDADWAGDLDDRHSYSGTVVALGQSVIQWRSAKQKSITTSSMEAEYV
FT                 ALSTGVKEAIWIQMFITELGMSELLPQTSELRCDNRAAIDFSKNCVEKGHT
FT                 KHIDIAHHFVREKLDEKTITLSYIASNENPADIMTKPLRRVAHQGGVHKLG
FT                 LNVAKVGD"
XX
SQ   Sequence 4233 BP; 1470 A; 937 C; 1019 G; 807 T; 0 other;
     tggttatggg cccaggtacg taagaaatag gaagcgaatc gtgcaagcgc cagtccggca        60
     cacgagaaga tatagattca tagcattcgc gcgtagacga tcgcccgaca agaacataac       120
     ctcaacatgg ccacccacga agcaaagacc gagacccgta taacgaagct atcggattgc       180
     aattatagaa cgtggaaaac agaaatgaag tggtacttga gaggtaaagg ccttctagat       240
     tacgttttag gcaccgttgc gctgaacgag aatgccaccg aggcggaaag aaaagtcttt       300
     cgcaccaacg atgacaaagc catggctgct atcggactgc acatagagcc gaaccaacag       360
     atacacatcg aggactgcaa caacgcctac gaggcgtggt catcgctaga acaggtacat       420
     caacctataa atagaattcg cataatgcag ttaaagaaag aattttatca cattaaaatg       480
     aaagacgatg aaacgatgtc atcatacgta gccagaacta agattgcggc ggctaacctc       540
     aaacaggcgg gtgcagaggt aaaagatgaa gacctcgcgt acgctgtact cgccggcctg       600
     cccgatacat acgaaaattt aaatatggca ctagcgagtc tgcccgatga cagattcaca       660
     tctgttgagg taataagagt cttactagcc gagcacgaca gacgaaagtc acgcaacgac       720
     gatacctccg cagaagcgat ggaagcatta caaataaaca aaggatcgaa aggtactaaa       780
     agcgacaaga catcgaacgc gtctgcagca gaaaagacgg caacctgctt caattgcaag       840
     aagccaggcc attacgcaag aaattgccga tcaaaaacag gtaacaaaca agcccaacga       900
     gacaacaaaa gtaaaaagaa tcttgatgca tttttagtgt ctctgaacaa cctcgacgtt       960
     gaagaaagct ggttgttgga cagcggatgt acacatcacg tgtgcaaacg gaaagactgg      1020
     tttcagaact tccatgagat agaaggagag accatcaaca ccgcagcgaa tcccgagaag      1080
     caaaagggca ctcaactatg cgcgaagggc aaaggcgaca tcgtattgaa gacattcgtc      1140
     ggcaatgcac agaaagctat agtactacgc aatgtttact acgttccgca cattagaaaa      1200
     aatttaatgt ctgtttcaca gattgaaaga aaagggaagg agctcacaat aaaagatggc      1260
     aaagtgagaa tacgcaacac acatacagga aaaataatgt gcgaagccta cagaaagaac      1320
     gacctgtacg tcgtccgagc tgaagtcgat ttgaaaactg aggctccagc cgaaacaaac      1380
     tttgcttcag tcaaagacag cagcatatgg catcgtcgat tctgccatgt aaataacaga      1440
     gcaatcgaag aactcgctac acacaataga gtgagaggtc tgaacgatac caaaatggat      1500
     aaatacaaat gcgacgcgtg ttacattgga aaatcaacga agagtccttg taaaaagatt      1560
     aaaaggagac aaagcaacga cgtatgcgaa ctgatacact cggatctctg tggtccgatg      1620
     cccgtcaagt cttggagcgg caacagatac tttatcacct tcaccgatga ttactcgagg      1680
     aaaacgaccg tcatgtgtat acaatccaag gatgaggtca cagactgcgt caagaaatac      1740
     atagctagag tggagcgtga gaaaggaaaa aaggtaaaga gattccgaac agataacgga      1800
     ctcgagtact gcaacagaca acttacagat ttctttgagg acacaggcat aaaacacgaa      1860
     agatccaacg tagaaactcc tcagatgaat gggatcgccg agcgaattaa tagaacgctt      1920
     atggatctgg tgagatcaat gttgaaatct gcaaagctcc cccaaaggtt ctgggcggaa      1980
     gctgtcgtga cagccgctta cattcgagac agagtcggac attcgtcaat caagggagac      2040
     gtgccactcg ccatttggac aggacgaacg cctagcgttc aacatctcaa agtgtatgga      2100
     tgtctagcat acgcaaactt accaagacaa ggtcgaaaga aactcgacga cagagcaaca      2160
     gaatgtttcc tagttggtta tgcatcgcaa accaagggat accgtctttg gtgtcagata      2220
     aatcagacgt gatcacaacg aaacacgtac gtttcgctga agataaaata ggctacgaat      2280
     ggctctacag agataacacg ctacacaggt acagatacaa caacacttgg tcagagagcg      2340
     acagcgaatc ggaaccagaa ccgacgacaa cgcgtcgaca cagccgatca agtacgaaga      2400
     aagaagaatc ttcgtcatcc ccagaagacg actcggaaaa tagtgaggaa agtccaacga      2460
     agaaagcaat aagccagact aaagcatgtc ggatagtggg ggaaaccgat gaacctccaa      2520
     ggaaagttgg cagaccgaag aagaagaagg taataagaaa cccatacggc agaaaaggga      2580
     agcctaaatc caatacagat gaccaaagta cgtgcgacac agaggataat agcgaggtag      2640
     agattcatca tgtcgaagtt gtcgagcctc gtgatctaaa cgacgcactt gcctcaccac      2700
     aggctacaga gtggaagcga gccatccgcg aagaaatcaa gagtctagaa aaacaaggaa      2760
     cttgggaagt gacagaacta ccacgaggta aacgatgcat aggatgcaga tggactttca      2820
     agctcaagac ggactccgat ggcaagatat gtagatttaa agcaaggtta gtagcgcaag      2880
     ggttctcaca ggagaagggt gtcgactatc acgaaacata cgcacccgtt gctaacttct      2940
     caattatacg cttcatgtta gctgcaacag caaatttttc atggtacact cgccacatag      3000
     acataaagtg cgcctacttg aacggaagac tagacgaaga gctgtacatg aaggtgccac      3060
     ccctatacaa agttgaagaa ggaaaggtag tcaaactcaa gcgaccaatc tacggattga      3120
     aacagtcagg aagaagctgg aatactgaga tcaacaattt ccttatcgaa aatggattta      3180
     aaagactacg ttctgcaagc tgtgtatact gcaaggggcg ctggacaata ctggtaattt      3240
     atgtcgatga catttttata ttctcccgaa agaaggctcc gttactagaa gcagtgcaac      3300
     taataaagaa tggctacgag acaagagatc ttggtgatat tacatacgct ctaggagtga      3360
     aaattcaacg aaacgaatct ggcgatctac agttaagtca gagagcatac atcgagtcat      3420
     tgttgtccag gttcaacatg gaagaatgtc gagctgcctc gacaccactc gaacacgggc      3480
     taaaattgtc aaaagaagat agctccaagt caccagacga aaaggcaagg atgatcaacg      3540
     tgccataccg gcaactcata ggatcgctga tgcacttggc gctgtatacg cgaccagaca      3600
     tcatgcacgc agtaacgaag ctatcgcaat acaacacaga tcctggccaa ctacattgga      3660
     atcaagccaa gcacatattg cgctacctga gcggaaccag agactacgcc ctatcatacc      3720
     gtgccgagaa ggcacctgca attcagatct acagcgacgc tgactgggca ggcgacctcg      3780
     acgatagaca ttcgtactca ggaacggtcg tcgccttggg ccagagcgtg atccagtgga      3840
     gatcggcgaa acaaaagagt atcaccactt caagcatgga ggcggaatac gtcgcattat      3900
     ctacaggagt gaaggaagcc atttggatcc agatgttcat caccgaactg ggtatgtcag      3960
     aactacttcc tcaaaccagt gaattgcgat gcgacaaccg agcggcgata gacttctcga      4020
     agaactgcgt cgagaagggg catacgaagc atatcgatat tgcccatcat ttcgtacgcg      4080
     aaaaactaga cgaaaagaca atcacattgt cttacatcgc atcgaacgag aatccggcgg      4140
     acatcatgac gaagccacta cgacgggttg cacatcaagg aggagtgcat aaacttggat      4200
     tgaacgtcgc aaaagtgggg gattgaagag gtt                                   4233
//
ID   Copia-25_SI-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   AEAQ01023844;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-25_SI_;
KW   Copia-25_SI-I; Copia-25_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023844; Positions       2     208.
XX
SQ   Sequence 207 BP; 54 A; 65 C; 33 G; 55 T; 0 other;
     tgcttgtcaa atctcgcgct accgctctca cagtaggaga gcagcactcg cgcgcactga        60
     gcgccaccgt acacatttac tcgttcatac actcagacat tcattactga acacactctc       120
     ttctatggca tgtaccgctt tgtatcagca cgaataaata gatcagtcta atccaatcgc       180
     ttcgctcatt tcacacccac gttatca                                           207
//
ID   Copia-26_AA-I repbase;    DNA;    INV; 3111 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-26_AA_;
KW   Copia-26_AA-LTR; Copia-26_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3111
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 952-952 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1984-2511] - Integrase core
CC   'ATTGA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1129..3027
FT                 /product="Copia-26_AA-I_1p"
FT                 /translation="MTDPAPLTMALVKQKLLDEHQRRKDRWADSGETAMKS
FT                 ERKVFQKQKVCFHCGKPGHFRRNCVELLQKKSEDDSRRRKADKVKVKDCSN
FT                 GKPICFSIAERRLKSLWYIDSGCSCHMTNNRSFFTKLDGSKCVDVVLADGS
FT                 STKSQGVGEGLVKCINAKGHIVDIKLTEVLYIPSLDSGLLSVQKLTLRGFE
FT                 VDFNESGCVIKCETGETVVMGEVYGSLFVLKTVEFSKLSKVRHFKNCQHIW
FT                 HRRFGHRDPAVLDRMKAESFVREFEMQDCGLRQTCEICLEGKLPRKPFPKA
FT                 SQSRANRVLDLVHTDVCGPMANVTPGGNRYLMTLIDDFSRYTVVRLLKRKS
FT                 DVVGCVKQYVSYVKCLFGRAPCVIRSDGGGEYVNNELRKFYKQEGIQAQYT
FT                 VAYSPQQNGVAERKNRTLQEMATCMLIDANLPKRYWGEAVITAAYVQNRLF
FT                 SRVVDRTPYEKWFGRVSAVGHIRVFGSLANAHIPGIEVQQLVFVGYNEEKE
FT                 TYRLLDTKTNRITFSQDVQFFEQQVGYHDVTQKGSDSTENIGDEGLIPASL
FT                 QKESTEAELLHEEPVQEERIDRENLLRKEQTDQEEDVESEDEFYGFEDEPE
FT                 PEQRAEKRATRGVRPRRFDDYIVDVGIVVEESPMF"
XX
SQ   Sequence 3111 BP; 896 A; 553 C; 851 G; 811 T; 0 other;
     ggttatcggc ccagaaaagt ggtaaagcgc gaagtgattc cggaacgcgg atattgtttc        60
     cattggcgtc ctcgggctaa ttagtaatcg ttgctgtcgc gctgggcttg agcagttgtg       120
     tgaagagttc tttgcaatgc tctgagagtg ggaccgaagt gaacgcaaaa cggtttgagt       180
     gtagtgtgta tcaaccactc actgggtgtc cgggagcata aactgctcga aaaatttgtt       240
     ttgctcagtc ggaagcctgt atagtagtgc cagtgcagca tcgagagaga agtaaacaat       300
     ctctgcactt gtattttggt gggacgagaa agtttctgtt gttgttgctg ctgctggcgt       360
     tgtcacagtt gttgctgttg ttcggcagac tggataccgt gctttggtgc gattgtgtac       420
     ggattgtgac taaatatggc agagaaatac ttgtttgctc ggcttagcaa ccaaaattat       480
     tcggtgtgga agacccgaat ggaaatgttg ctgaagagag aagaactgag gagtgttatt       540
     gactctgcaa gaccagaacc agtgacggac acatggacta aaagtgatca gaagtgtcat       600
     gcaacgattg tcttgtatat agatgacaat cagttgaatg tagtgaaaga tgccagaagt       660
     gccaaggcgg tttgggatca attaaaacag tatcacgaga agacgtccat gacctcgcgc       720
     gtgtcactgt taaagaaact gtgtagcctg aatatgtcgg aaggttctga tgttgagaag       780
     catttattcg aactggaaga gctgtatgac cgactagcgt aagctggcca gtcattggaa       840
     gatccattga aaattgctat gctcttaagg agtttgccgg aatcgtatgg agatcttgtc       900
     acggcactgg agagtcggcc ggaggcggat ttaacgatca acgctccgtc atcgtaatca       960
     tcgtcatcat cggaacttga aaagcagttt ttctgttcaa aactaaaaat tattcgatga      1020
     aaatgtgttc attgtgtttc ggtaggggaa cagaatacag tgaacctatt ttcctgtaaa      1080
     ttttcttgat tttgaacgaa aaaactgcta ttaaaaattc cgaaattaat gacggatcct      1140
     gcccccttaa cgatggcgct agtgaaacaa aagttgttgg atgaacacca gcgacgaaag      1200
     gatcgatggg ccgattccgg cgaaaccgcc atgaaatcag agcgaaaagt gttccagaag      1260
     cagaaagtct gctttcattg cggaaaacca ggtcattttc gtcgaaattg cgtagagctg      1320
     ttacagaaga aaagtgaaga tgattctagg agaagaaaag cagataaagt gaaagtgaag      1380
     gactgttcga atggaaaacc tatatgtttt tcgattgctg agcgtcgatt gaagagtttg      1440
     tggtatattg atagtggttg ttcatgtcac atgacgaaca accgctcttt ctttactaag      1500
     ctggatggca gcaagtgcgt cgatgttgtt ttggcagatg ggtcttccac gaagtcccaa      1560
     ggagtgggcg aaggcctagt gaagtgcatt aacgccaaag gacacattgt tgatataaag      1620
     ctcacagaag tgttgtatat accgtctttg gacagtggac tgctttctgt gcagaagctc      1680
     acgctgagag gatttgaagt ggattttaac gaatcaggtt gtgtgatcaa atgtgaaaca      1740
     ggagaaacgg tagttatggg tgaagtttac gggagtttat ttgtgttgaa gaccgtcgag      1800
     ttttccaaac tgagtaaggt aaggcatttc aagaactgcc aacacatttg gcacaggcgc      1860
     tttggacaca gagatcctgc ggtgcttgat cgtatgaaag ctgaaagttt cgtaagagaa      1920
     ttcgagatgc aggattgcgg attgagacag acttgtgaaa tctgtttgga aggtaagctc      1980
     cctcgtaaac cgtttccaaa agcttcacag agcagagcta accgtgtgct tgatctagtg      2040
     cacactgacg tttgtggacc gatggcgaat gtcacccctg gaggaaaccg gtatcttatg      2100
     acgctaatcg atgacttcag ccggtacact gttgttcgcc tgttaaagcg gaagtcagat      2160
     gtcgtcggtt gtgttaaaca gtacgtttcc tatgttaaat gtctgtttgg aagagctcct      2220
     tgtgtcatca ggtcggatgg aggtggcgag tatgtgaaca acgagttgcg gaaattctac      2280
     aagcaagaag gcatccaggc gcagtacact gtagcttact cgccccagca gaatggcgtg      2340
     gcggagcgca aaaaccgcac gctacaagaa atggctacct gtatgctgat cgatgcgaat      2400
     cttcccaaac gatattgggg agaagctgtg ataacagcag cttatgtaca gaatcgatta      2460
     ttttcccgtg tggttgacag aactccatat gagaaatggt tcggaagagt atctgctgtg      2520
     ggacatattc gtgtatttgg aagcttggcg aatgcccaca taccgggcat tgaagttcaa      2580
     cagcttgttt tcgtcggata caatgaagag aaggaaacct atcgattgtt ggatacgaag      2640
     acaaacagaa taacgttcag ccaagatgta cagttcttcg aacagcaggt tggataccat      2700
     gatgtgactc aaaagggatc ggattcaacc gaaaacattg gtgacgaagg tttgatacca      2760
     gcttcgcttc agaaggagtc aacagaagca gagctgttgc atgaggagcc agttcaggag      2820
     gagcgaatcg atcgtgaaaa tttattgcgg aaggagcaaa cggatcaaga agaagatgtg      2880
     gaatccgaag atgagttcta cggatttgaa gatgagccag aacctgagca acgagctgaa      2940
     aaacgagcaa ctagaggcgt tcgtccacgg aggtttgacg actatatagt cgatgtgggt      3000
     atagtcgttg aagaaagtcc gatgttctga gcgagtacgt aaggaatcta tattatatgt      3060
     aagtaatttt gtgtaataga ctgtatagcc gctgacaatg tcgaggagga g               3111
//
ID   Copia-26_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-26_AA_;
KW   Copia-26_AA-I; Copia-26_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-235
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 953-953 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 235 BP; 52 A; 56 C; 55 G; 72 T; 0 other;
     tgtcgggatg tgcgacatct gtccccatat ctatgtgcgg caatgtgtga gagaagggaa        60
     gtaaccaata tcagttcact gttaatgtcc gtggaataaa gacgttcaaa cgtacgttcg       120
     ttgtttacca ctgtcgcgtt aaattaccga aagttacccg gattgccccc tgtatttccc       180
     tcgttggtag tgttccgctg cgtgacctgt ccaccgtagt ttactctgtt ctaca            235
//
ID   Copia-26_CQ-I repbase;    DNA;    INV; 4166 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-26_CQ_;
KW   Copia-26_CQ-LTR; Copia-26_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4166
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1473-2000] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1401..2678
FT                 /product="Copia-26_CQ-I_2p"
FT                 /translation="MADGIEFQEGVLPDCVSCFEGKQTRQPFPSSSSRATE
FT                 LLELVHSDLCGPVEVPSLGGSRYFMTFLDDASHKVTVYFLEKKSQALDAFK
FT                 RFKARAERESGKKLRVLRTDNGREYVNADFRKVLEQDGIGHQTTCPYTPEQ
FT                 NGRAERLNRTLVEKARCMLNEAKLGKEFWAEAISTAAYLVNRCPTRTLGDM
FT                 VPEQAWTGKKPNLKNLKVFGSSVMVHIPKVRRQKFDPKSRRGTFVGYCEGT
FT                 KGYRVYDPETGDFVISRDVVAIEEGSSNKSVACELILKPVEFMELHFVEAM
FT                 QPELPIEREDVVRDRRDEGDQAGVIEIGHEDPPPEEPVEALVDFLEGALPS
FT                 QPERDQLPSSKGSRGAANGSAEPRASTTNSTVMVLFLAKMFPHSQLPHPRC
FT                 NPLLLRWKTRRATRRFCDGQIEIDGLRPCRKR"
FT   CDS           2579..4153
FT                 /product="Copia-26_CQ-I_1p"
FT                 /translation="MQSVIVEMEDPKSYEEVLRRADRDRWIAAMQEEMNSL
FT                 SENRTWVLADLPNGRKAIRNKWVFKTKRGPDGVVQRYKARLVVKGCSQRPG
FT                 VDYDEVYSPVVRYATVRFLMALSVKYNLDIDQMDAVTAFLQGELNDEEIYM
FT                 LQPEGFVDAGGRVCRLKKALYGLKQSSRVWNTQLDAALQDFGLHRSAVDPC
FT                 LYWSFQGDKLLFVTIYVDDFLIFTNDLNMKKKLKANLNKRFKMKDLGQASH
FT                 CLGIRITRNREDGKLWLDQQAYVEDIVKRFGMADCYPVAMPAEPSLRLDKT
FT                 MSPGSKEEAEEMHKVPYKEAVGCLSFAAQVTRPDIAFAVNMVSQFAANPGK
FT                 QHWDAVKRIFRYLKGTANKKLEYSKEGADQIRGYTDADWGGDPDDRRSTTG
FT                 YVFTLQGGAISWNVKKQPTVALSSCEAEYMALSRTIQEAMWWNNLRAQMFK
FT                 VEPVDLYCDNQSAIAIASNGSYNPRTKHVSIRYHFVHESLQHGLVKLGYVS
FT                 TVEQPADGFTKPMNSQKQTKLCEAIGISD"
XX
SQ   Sequence 4166 BP; 1051 A; 925 C; 1331 G; 840 T; 19 other;
     agacgtgttt tctctactct actaaaggtt atgggcccag ctcaaaccta gaagaagttc        60
     aagaagttaa ttttggaatt tgaagatgtc gacgagaagg tcaccagttc gagatccagc       120
     acgaaacgga aacggaggag ccggcaacgg cgggaatgga gccccgctag cccaagtcgg       180
     aaggaacgtt cgggtctacg gtagttcggt ggccatgccg gcgatcgaga aactaaaggg       240
     tcgggagaac tactcgacgt gggcgttckc gatgcggatg accctgatcc gcgagggmag       300
     ctggcctgcc gtcaagcgac gagcggaagg tgacatcgtg gcggaagacc tgaaggaacg       360
     ggcgctggct acgatctgtc tgggtstgga aaacamcaac ttcggtcwcg tscaggacgm       420
     ggaagmcscc gaggaagcct gggggaagct ggaggccgcg ttccaggaca gcggttctgc       480
     ccggcgagtt ggcctgctca ggaagctcac gtcggtgcac ctcgasgact gcgcgagcgt       540
     cgaagagtac gtcgacgagg ttatgactgc gagtcaacgt ctagctgcga tcgggttcaa       600
     ggtggacgat tcctggctgg cgggaatgct gttgatggga cttccggagc actacgagcc       660
     gatgatcatg ggactcgagg cgtctgggaa ggcgmtgtca gcggatgccg tgaagtcgaa       720
     gatcctgcag gacgtgaags wcgagmgkgg gccgacmaas kccgggtgcg gacggwgcac       780
     tgtaccaggg gtacaagttc gagtcgaacc agggagccgc tgcagtcaag atcgagaaaa       840
     gcgatgcttt gttacaaatg cgacaagccg ggacattttg cggccaagtg tccagagaag       900
     cggatcacga aaaatcgaag cctacagcct ggttcagcac ggacacgacg ggtggtgtca       960
     cgagcaggcg catggtactt ggactcagga gcatcgtgtc acctggcaac gtcggaacag      1020
     aacttcaacg gatgaggagt cggtgcagtt cgtcgttgga acggcgaaca acggttcgat      1080
     gacggcggtc tcaagaggaa acgtggcatt ggatgtccag acggcagctt ggacgttcgc      1140
     ggagtgctga agatcccaga cctggcctcg aatctgctct cggtgagtac aatctgtaaa      1200
     gagggccaca cggtgatctt cacggcaaag cagtgcgagg tactgggcga agacggtaag      1260
     caggtcgtct tccgggcgta gaggagggtg gactgtatcg attggaaaga ccggagagat      1320
     cgtttctggt gagcaagttg gagctttggc acaagcgact cggccatttg aacgttggga      1380
     gtttgcagaa actcaaacgg atggcggatg gaatcgagtt ccaggaaggc gtgctgccag      1440
     attgtgtctc gtgctttgaa gggaagcaga ctcgacagcc gtttccaagt agcagttcga      1500
     gggcaactga acttttggaa ctggtccact ctgacctgtg tggtccggtg gaggtgcctt      1560
     cgcttggagg aagtcggtac tttatgacgt tcttggatga tgcgagtcac aaagtcacgg      1620
     tgtactttct ggagaagaag agtcaggcac tggatgcgtt caagaggttc aaggctcgag      1680
     ctgaacgaga atctggaaag aaattgcgag ttttacgtac ggacaatggc agagagtacg      1740
     tgaatgcaga tttccgcaag gttctggagc aggacgggat tggtcatcaa accacgtgtc      1800
     cgtatacacc agagcagaat ggtcgggctg agcgactgaa caggacgttg gtcgaaaaag      1860
     cgcggtgcat gctgaacgag gccaaactgg gcaaggagtt ctgggctgag gcaatttcga      1920
     cagcggcgta cttggtgaac cgttgtccga cacgaacgct tggagacatg gtgccggaac      1980
     aagcatggac cggaaagaag ccgaatctca agaacctgaa ggttttcgga tcgagcgtga      2040
     tggtgcacat cccgaaggta agacgacaga agtttgaccc gaaatcaaga agaggtactt      2100
     tcgttggata ttgcgagggc acaaaggggt accgtgtcta tgatcctgaa acgggagatt      2160
     ttgtgatcag tcgggatgtc gtcgccattg aagaaggttc atcaaataag agcgtggcgt      2220
     gtgagctgat tctgaaaccg gtcgaattca tggaattgca ctttgttgaa gccatgcagc      2280
     ctgagttgcc tatcgagcgt gaggacgtcg ttcgagaccg gcgggacgag ggagatcaag      2340
     cgggcgtgat cgaaattggt catgaagatc cacccccgga ggagcccgtt gaagccttgg      2400
     ttgacttcct tgaaggcgcg ctcccttcgc aaccagaacg tgaccagctg cccagcagca      2460
     agggttcacg aggcgcagcg aacgggagcg cagaaccccg ggcaagtaca acgaattcaa      2520
     ctgttatggt actttttctg gccaaaatgt ttccccacag tcagctgcca catccccgat      2580
     gcaatccgtt attgttgaga tggaagaccc gaagagctac gaggaggttc tgcgacgggc      2640
     agatcgagat cgatggattg cggccatgca ggaagagatg aactctctga gcgagaacag      2700
     aacgtgggtg cttgctgatt tgccaaatgg acgaaaggca atccggaaca agtgggtgtt      2760
     caaaacaaag cgaggtccgg acggtgttgt acaacggtac aaggcgcgac tggtggtgaa      2820
     gggttgttca caacggcccg gtgtggacta cgacgaagtc tattctccgg tggtgcggta      2880
     tgcaacggtt cggttcctga tggcgctttc ggtgaagtac aacctggaca tcgatcagat      2940
     ggatgcagta accgcattcc tgcagggcga gctgaacgac gaggagatct acatgctaca      3000
     accagaaggg ttcgtggatg ctggaggaag ggtgtgcaga ctgaagaaag cgttatacgg      3060
     tctaaagcag tcaagtcgag tttggaacac tcaactggac gcggctcttc aagattttgg      3120
     actccatcgt tcggcagttg acccgtgtct gtactggtcg ttccagggcg ataagctgtt      3180
     gttcgtgacg atttatgtgg atgattttct catctttacg aacgacctga acatgaagaa      3240
     aaagttgaag gcgaatctga acaaacggtt caagatgaag gacctgggcc aggcatcgca      3300
     ctgtcttgga atcaggatca caaggaatcg cgaggatgga aagctgtggc tggatcaaca      3360
     ggcctacgtc gaggacattg tgaagcggtt cggtatggcg gattgttatc cggttgctat      3420
     gccagcggaa ccgagcttgc ggctggacaa gaccatgagt cctggaagca aggaggaagc      3480
     cgaggaaatg cataaggtgc cgtacaagga agctgttggg tgtctttcgt ttgcagctca      3540
     agtgacacgg ccggatatag cttttgcagt caacatggtg agccagttcg ctgccaaccc      3600
     tggaaagcaa cactgggacg cggtcaaaag gattttccgc tacctgaagg ggactgctaa      3660
     caagaagctg gaatattcga aggaaggtgc cgaccagatc agaggataca ccgatgccga      3720
     ttggggagga gatccagatg atcggaggtc cacaactggt tacgttttca ccctgcaagg      3780
     tggagccata tcgtggaacg tcaagaagca gccgacagtg gctttgtcgt cgtgtgaagc      3840
     tgaatacatg gcgctttctc ggacgattca agaagccatg tggtggaaca acctgcgagc      3900
     tcagatgttc aaggtggagc ctgtggacct gtactgcgac aaccaatctg caatcgccat      3960
     cgctagtaac ggttcgtaca atccacgcac gaaacacgtg agcattcgct accacttcgt      4020
     gcacgagagt ctgcagcatg gacttgtaaa gctgggatac gtatccaccg ttgagcagcc      4080
     agcggacgga ttcacgaagc cgatgaacag ccagaagcag acgaagctat gcgaggccat      4140
     tggaatatcg gattagggag gagtat                                           4166
//
ID   Copia-26_CQ-LTR repbase;    DNA;    INV; 104 BP.
XX
AC   .
XX
DT   07-JAN-2011 (Rel. 16.02, Created)
DT   07-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-26_CQ_;
KW   Copia-26_CQ-I; Copia-26_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-104
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Direct Submission to RU (07-JAN-2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 104 BP; 35 A; 18 C; 25 G; 26 T; 0 other;
     tgatagatcg aagtaatccg gtcatggagg atttggttct ggaagtcgac gtctgtaagc        60
     tgagcaaaaa taaaatcatt ctactgcgaa cagtctacaa gaca                        104
//
ID   Copia-26_SI-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-26_SI_;
KW   Copia-26_SI-I; Copia-26_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-282
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 429-429 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 282 BP; 65 A; 57 C; 57 G; 103 T; 0 other;
     tgttggaact atacgtgttc aagacgtttc catgaatgtg tgtagttggc aacgcggaga        60
     ggttgcgtgt actttatgaa cgcttgactt tttgtgactc tgtcgcgcgc caaaaacgtt       120
     gcttactctc ccttacttct ggacgcttac agaaagaaag cttgtgccgt gttgtctgta       180
     taataactgt ttcttttgca tccgttctat ctttacttca atgttctttg tgctaactac       240
     acgttttgac tgtactctaa taaatgaata gacttttcaa ca                          282
//
ID   Copia-27_AA-I repbase;    DNA;    INV; 4094 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.01, Created)
DT   14-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-27_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4094
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4094
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4094 BP; 1079 A; 861 C; 1261 G; 893 T; 0 other;
     ggttgtgagc ccagtatatt ccggttcggt tatcggtata gtgaaagtga ttcctacgat        60
     ggaggacgac ggaaaaacgg agcgcgtcta catgttcgat ggcagtaact acatggcctg       120
     gaagttccgc acgcaggtgc tgctggaaga gcacgacctg ttcgtatgtg tggaaacaga       180
     ggcggaagaa gtagcagaac tgcaggagca ggaaggcgac tcgcagcaga agaaggagga       240
     gaagcaaaag atgcgggaaa agcgaggtaa acaagaccgc agatgcagat cgttgcttat       300
     ctcaagaatc agcgatagcc agctcgaata cgtccaggag aagaaaaccc ccaaggcaat       360
     ttgggacgca ttaaaaagag ttttcgaaag gagaagcatt gcgagccgca tgcatctgaa       420
     gcgacgaatg ctgagtctcc gtttcgaagg tggatcgctg cacgatcact ttttgcgttt       480
     tgatcgtctc gtcagggagt atcgagccac cggcgcggag atggaggaat tggacattat       540
     ctgccacctg ttgctcacat tggggccagc gttttcgacg gtggtgacgg ccatcgagac       600
     catgccggag gagaacctga gcattgaatt cgtcaaatgc aggttgctcg acgaagaggt       660
     gaaacggaag gtggtaggtg ttgaatctcg aacggcgaag agtgattcag cggcgttttc       720
     gggtggcaag caggagaaga aaaagaagat cttcaaatgc ttcggctgca agcaagacgg       780
     ccataagctg gctgactgcc cgaggaaaaa ggaaggtgaa aagaatggga aaccaaaatc       840
     aaaagcacat ctcgcggagg acagcggcgt ttgttttgct ggtgttagca gtggtgtccg       900
     cccaccggat gaatgcaatc ggttgcagtg gttcatcgat tccggctgct ccgatcatct       960
     cgtgaacgac aggaagctgt tcgacaagct gaacccgttg gagtccccag tggagattgc      1020
     cgttgcgaag aacggtgaaa cgattttggc gaagcattcc ggaacagtga gggtgaaagc      1080
     tctagtggaa ggtaaatata ttgactgttt cgttcacaat gttctttatg tgccagagtt      1140
     gaggtgcaac ctcttctctg tgatgagggt ggaccagatc ggtatgaaag ttacctacca      1200
     gagcggaaaa gtgtggatcc atcgaggatc ggaactcgtc gcgtgtggct cgcggtatgg      1260
     aaaactgtat cgtctcgatt tcttcaaaga gaagcacggc gcgagtgaat cgcttttctc      1320
     gtgtgggcgt atctcgaaga accttgaact gtggcaccgt cggttcggcc acttgaatac      1380
     gaaaagtgtc gaaaaactta ttcgggagga aatggtgacc ggtttgaaag tggacattga      1440
     caattcgaac agggaaacca tcgtgtgtga atcttgcgta accggtaagc aaacccgaaa      1500
     accgttcgtt gtgcgggacg cgaaacgatc gtcgcgagtg ctggagttga tacattccga      1560
     cgtgtgcggg cccgtgtcgc cggttggcct atacggagag aggtatttcg tcacttttat      1620
     agatgactgg agtcatttta ccatgacgtt cctgatcgat acaaaggaag aagtcttcga      1680
     atgctttcgg cagtacgaag ctcacgtgac ggctaagttt gggaagaagg tgtgccgcct      1740
     ccgctgtgac aatggcgggg aatacaagag taatgagttc gagcgtttct gttcagataa      1800
     aggcatccag gtggaatgga cggttccata caccccggag caaaatgggg taagcgagcg      1860
     gatgaaccgc acccttgtgg agaaggcgag gtctatgctg gaggattcaa agatagacaa      1920
     gcggttttgg ggtcaagcga ttcagacggc agcttttctg gtgaaccgta gtccatcgaa      1980
     cgcgttggat tcaaatttga cgcctttcga gctctgggag ggccggaaac caaatgtcag      2040
     caagctgcgc gtattcggct gtccaatgtt tgtgcacatt ccgaaagagc accgcaaaaa      2100
     gctcgatgcg aaagcctgga aggggctctt tgtgggatac acgcacaatg gctatcgtgt      2160
     gtgggatcct gtagcgagga agatagtgca cgcacgtgat gtggattgca tcgaaagtga      2220
     tacggttgag cagggcgacc ccaaacctcg taccagtggt ttcgtcaaga ttccggtgat      2280
     tcgtgagccg gagcctgaag aggatgaaac ggaagaagac atcgacgatt cggagtgcga      2340
     cgatgctggc gaagaattca gaagctttgt agaggatgat gtggagattg agccgccggc      2400
     tgcagagcgg gctggaacgt cgcctgctgg caacacagga gcaagaccaa ggcgagagcg      2460
     gactaccccg gcgtggcacg aagatttcga gttcgattat gccgggtacg ctctgagtgc      2520
     agtggattat gttgataacc tgccaacaac ggttgcagag gcaaagcaac gtaccgactg      2580
     gagtaagtgg gaagcggcca tgcgagacga gatggagtcc cagttgaaaa acaggacgtg      2640
     gcgtttgacg aaattaccga cgggacgtac ggctgtgacc aatagatggg tgttccaaat      2700
     caagcgtgga atgaacggcg agcccgatcg ctacaaagct cgacttgtgg caaggggctt      2760
     cagtcagaaa ttcggcttcg actattcaga aacttactcg cctgtagcca aactagacac      2820
     attaaggaca gtattggctc tggccaatca cggcaagatg gtggtccacc agatggatgt      2880
     ttccacagcg tttctcaacg gaaagctcga agaggaaata tacatggtgc agcctgaggg      2940
     attcgagcgt ggagacggtc tggtgtgccg gctggaaaaa tccttgtacg ggttgaagca      3000
     ggctgcgaag tcctggaatg atcggttcga cggctttatc gtacaacgac taggattcac      3060
     acggagcgtg aatgaccaat gcttgtactg gaagaaggtc ggacagggta ccgtgtattt      3120
     agttgtgtat gtggatgacg tgatcattgc cggatcaaca ctgaagattg tggaaacggt      3180
     gaagcgatgc ctggcagcgg agttccagat gaccgacgga ggtgatgtaa agtgctttct      3240
     cggtatgtgc gttgaacgtg acgtggagaa acgagtaatg aagatcagcc agaaacggtt      3300
     cttggaggat ttgctccgca ggtttggcat ggatgaatgc aagcctgttt ccactcccat      3360
     ggaggtgcga ctcaagatgg agagaggcac ggaggaaaag cgaacgaagc acccctacag      3420
     ggaactagtg ggttgcctga cgtacgtttc gctgacgaca cgacctgatg tagcagcggc      3480
     tgtgaactac ttcagtcagt atcaaagctg ccctactgac gaccattgga ttcacctcaa      3540
     gaggattcta cggtacataa gagggactct ggacttgtct ctggtgtacc aagccgacga      3600
     tagagctgcg actctagaag tgttctccga cgcggattgg gcgaacgaca cgtctgatcg      3660
     ccgatcgata agtggatgcg tttttaaggt actgggatgt actgttgggt ggatcacacg      3720
     gaagcagaaa accgtttccc tgtcatctac agaagcggag cttaatgctc tctgtagtgc      3780
     ggcttctcac cagatgtgga tggtacgact gttgaaggac atgggatgcg aaccacctga      3840
     gccagttgtc ttctatgagg acaatcagtc cactattcgg attgcggaaa attcgaagga      3900
     attcgggcgc ttaaagcatg tagatgtgaa gttacacttc ctgaaggact tggtgcgaga      3960
     aggacggatt cgactcgaat atcttcgctc agaaaaccaa ccagcggaca tcatgacgaa      4020
     gagtttgccg gttggggctt ttcggcgaca tcgagaaggc atcggcctga tagacagcag      4080
     cgcttgaagg aggg                                                        4094
//
ID   Copia-27_AA-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   14-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-27_AA_;
KW   Copia-27_AA-I; Copia-27_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-196
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 954-954 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 196 BP; 47 A; 43 C; 30 G; 76 T; 0 other;
     tgttgagtgt acaaccctgc tgcctattgc ccctactttc attccacacc aatgcgttat        60
     gttggtatgt tgtatttttg acatttctct cattccaatg taaaatcaat ttgaataaac       120
     acgttgtaat ttttcttcaa tcgtaaaacg tttgtcgcga gtttatttct gctgcggcca       180
     atccataact ctgtta                                                       196
//
ID   Copia-27_SI-I repbase;    DNA;    INV; 4335 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-27_SI_;
KW   Copia-27_SI-LTR; Copia-27_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4335
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 430-430 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [1525-2052] - Integrase core
CC   'TCCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1129..2700
FT                 /product="Copia-27_SI-I_1p"
FT                 /translation="MKDVSLQNTLYVPDLRTNLLSVGKITEQGLKVIFYRN
FT                 TASVTDLEGNLKLVAEKIDGLYYVREHEEVVHAVTGSGTPPSVSSDGKISW
FT                 HRRLGHLNMADLREAERSGAILGLTRKELGDNVECDICAKAKMSRKSFPRQ
FT                 SSRESELLDIVHSDVCGPMRVASIGNAKYYIEFIDDHSRWCEVKFLKSKDE
FT                 VFKATKEYIALVENQKGRSVKCLQTDNGREYLSNEFEEYLKARGITRRLTV
FT                 PYNPEQNGIAERKNRTLFDMARCLLFQSGLPSHFWAEAVNTANYIRNRCPT
FT                 KSLKGKTPHEIWTGQPPDVSHLHEFGMRVFCLDRAPGKGKLDPRSKDGILV
FT                 GFSEESKGYRIWIPEDRKVVISRDVKFSGKSTRIETPSNLGFESQRPEVVE
FT                 GKREEDLEFIDVNLLNPLVDDDAPSSVESQPDPQPESQPENHFLDQHHLGD
FT                 SSPESSEEEFYDLPNNVPAEEPEAAFLRDETPTVRRGRGRPRLIRTGNRGR
FT                 PHRLFHEAMICDVNSEQVLLSEVPMRQA"
XX
SQ   Sequence 4335 BP; 1211 A; 979 C; 1059 G; 1080 T; 6 other;
     ggttatgggc ccagaggtct tactctatac acgagtgaat tccgaatcgt twtttctttg        60
     gacgccacat tactctctgt gctcgcccgt gctcactccg agaagtgaat taatcgacgc       120
     gatgcagtct tctcacgtca cacgttttga atcccttaac cgagagaact acgacacttg       180
     gaagattcat atggaggcgc ttctgattaa aaatgacgaa tgggaattcg taagcggtac       240
     gtacacaaaa cccgagccga tggcaatgcc gagaatgccg cagctatttc cgcttggtta       300
     aagggcgata gcaaagctcg ttctgatatc atcctcgcaa taagttcatc tgaacttaaa       360
     caaattaagg gatgtctaac ctcgcgtgct gtgtggctta aattggagtc tatttaccag       420
     tcgaaagggc cggcgcgaaa agcgaccctt ttgaaaagat taatgcttca ccgaatggag       480
     aactctgata ttcgagagca cgttggtttg tttttcaatg ccgtcgataa gctgaaagat       540
     atggatgtgg atataaataa cgacgtttta actatagcgt tgttatacag cttgccgccg       600
     agttttgaaa attttcgcgt ggcgatcgaa tcgcgcgatg acttgccgga tccggatgcc       660
     ttacgtgtga agatcatcga ggaatctgat gctcatcgtc acgagaaaag ttccggatca       720
     acagcgatgc tcgcgaaatc gtctcagaag agcacacagc agaactccgg aaaatttgga       780
     agcaaaaagg ggatcaagaa caagaagaac aaaatcaaat gttcaatttg caacttgttc       840
     gggcataaag atgccaattg tcgtaaaaat ccaaacaaaa attccactga acaaaagtcg       900
     tcggaacaag tctcgctatg tgtcggagaa gtttttctga caaatcctga agatcgagct       960
     cgccgatggt gcttggacag tggagcgact acgcatttgt gcagcaacgc cggatctttc      1020
     gtatctacag acttcacaaa acacgggaga ttawatctcg ccaacagcga ctacacagaa      1080
     agcatagccg agggcactgt caagttcaag gctaatgttt ttggagcgat gaaagacgtc      1140
     tcattgcaga acactttata tgttcctgac ctacgaacaa atcttctttc ggtaggtaaa      1200
     attactgaac agggactcaa agtgatcttt tacagaaaca ctgcatctgt gacggatctt      1260
     gagggaaacc tgaagctcgt cgctgagaag atcgacggat tgtattacgt ccgagaacac      1320
     gaggaagtcg ttcacgccgt aactggctcc ggaactccgc cctcagtctc ttcagatggc      1380
     aaaatttcat ggcaccgacg tcttggacac cttaatatgg cagatcttcg cgaagcggag      1440
     agaagtggag ctatacttgg tctcactcga aaggagctcg gagacaatgt ggaatgtgac      1500
     atctgcgcca aggccaagat gtctcgcaag tcttttccaa gacagtcgtc tcgagaatct      1560
     gaacttctgg acattgtgca ttctgacgtt tgtggaccaa tgcgtgtcgc ttcaatcggc      1620
     aacgcaaagt attacatcga attcattgat gatcactctc gctggtgtga agtaaaattt      1680
     ttgaagtcca aagacgaagt tttcaaagcc actaaagaat acatcgctct ggtagaaaac      1740
     cagaagggac gttctgttaa atgtttgcag actgataacg gacgagagta cctgagcaac      1800
     gaattcgagg aatatctcaa ggcacggggc atcacaagac gattgacggt tccgtataat      1860
     ccggaacaaa atggcattgc cgagcgcaaa aatcgtacat tatttgacat ggctcgctgt      1920
     ttattgtttc agtctggttt accttcgcat ttctgggctg aagccgtcaa cactgcgaat      1980
     tatattcgca acagatgtcc tactaaaagt ctaaaaggga agacgcctca cgagatatgg      2040
     accgggcaac cgcctgacgt aagccatctt cacgaattcg gtatgcgagt tttctgtctt      2100
     gaccgcgctc ctgggaaggg gaagctggat cctcgatcta aagatggtat tctcgttgga      2160
     ttttccgagg agagcaaagg ttaccgaatc tggatacccg aggacaggaa ggtcgtcata      2220
     tcacgggacg tgaaattttc cggaaagtct acacgcatcg agacgccttc aaatttagga      2280
     tttgaaagcc agaggccgga ggtcgtcgag ggaaagcggg aagaagatct cgaattcatc      2340
     gatgtgaatc tcctaaatcc tttagtcgac gatgacgctc cttcttccgt ggagtcgcag      2400
     ccggatccgc agcctgagtc gcagccggag aatcattttc tggatcagca tcatctcgga      2460
     gattcgtcac cggagtcgtc tgaagaagag ttctatgatt tgcctaataa tgttcctgcg      2520
     gaggagcccg aggcagcatt tctcagagac gagacgccca ctgtgagacg tggaagaggc      2580
     agaccgcgtc ttatccgcac tggtaatcga ggacgtcccc acagactttt ccacgaggct      2640
     atgatctgcg atgttaattc ggagcaagtt ctactctccg aagtacctat gcgtcaggcg      2700
     mtcactggtc cggactcatc cgagtgggag gatgctatgg tcgaagagat gcgttcgata      2760
     ctcaaaaacg atacctggga actagtcgat cgtccgagag acccgactgt catcggaagt      2820
     cgaatggtac tccgaaataa aataggagca aacaacaaaa tcgaacgaag aaaggctcgt      2880
     ctggtagcac aaggtttttc gcaattacca ggtgtgcatt ttaaccagac atttgcccct      2940
     gtcgcacgtc tgagctcgat tcgtctcatc gccgctctct ctgctcaatt cgatatgaag      3000
     atttggcagt tcgacgtcac tacagcttac ttaaacggag agctcgagga ggtgattcac      3060
     atggagccgc cgaagttttt cacagagatg cttgaaattc tcgttgaaga gaaaaactcg      3120
     aatatcgcag ggaaggcaaa gaagatgctg agcgagttaa aaaaggcgac aaagtttgtt      3180
     tgctgaaaaa agtctctcta cggcctacgt caagccggaa gacaatggca cgccaagcta      3240
     cgagacgctt tactttattt cggagcttcc ccttcgcagg gagatccatg cctatacttt      3300
     aagggatacg gaaaagacgt cacgctcatc gcaatatatg ttgatgacat tattgtggct      3360
     tatctccagt catccggact caatttccaa actcggaaaa gtgctttttt ctcgatttga      3420
     tgttaaggat cttggacctg taaatttctg tctggggata aaattcagac aagtcaaagg      3480
     ccgagtgatc ttgaatcagg cagtctatgt cgaaaatttg ttggaacgat tcggaatggc      3540
     ggatgctaaa ccattgacta caccgatgga tgttaacgcg aaactcwtca aggaagccga      3600
     tccggacgag ttgggagacg acgtacccta ccgggagctc gtcggttgtc ttacgtatct      3660
     agccctgaca acgagacccg acatcgctta tgcmgccagc tgcctgggtc aatttaacaa      3720
     ctsctacgga aaagcccatt ggaccgcagc aaaacgtgtc ctgcgttacc ttaagggtac      3780
     aaaagaacta ggtctcacat ttaccggaga ttctaagcct ttgcgagggt acgtcgactc      3840
     ggactgggga aactgtccag atgaccgtcg ctcttactcc ggatacgttt ttttgctaag      3900
     tggatgccca gtatcttggg agtctcggaa gcagaggaca gtagccttaa gttctactga      3960
     ggccaagtac atgtccttga ctgatggaac caaggagtca atatatttga cacgtcttct      4020
     tcaagagctt ggttttccgg aattacagac cccgtactgt tcattgacaa ttacggagcg      4080
     ttgaaacttg ccgaaaaccc gatttttcat ggtcgaagca aacacatcga cgttcgtcat      4140
     catttcgtgc gtcaagccct acaagatcaa cttctacggc ttgaacatgt ttctactgaa      4200
     gaaaatgttg ccgatttatt caccaaggct ctagcaagac ccagattgat cgaattgata      4260
     agactggcag gattacttca ttgaagatct tgaaaccatc atccgatatt tagtcgtgct      4320
     cgtttcgagg ggaag                                                       4335
//
ID   Copia-27_SI-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-27_SI_;
KW   Copia-27_SI-I; Copia-27_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-291
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 431-431 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 291 BP; 80 A; 52 C; 39 G; 120 T; 0 other;
     tgtcggaaaa tatatttcga tataatttct ttttatattt tagcgtaacg agcatttttg        60
     tatttaaatc taagcggctc acttcgttga tgtttcaaac ccaaataatt catttttctt       120
     ttattttccg tgcgtgtaga ccccgtgaag tcttttgtca ttacaaccgc ttatttgaaa       180
     ttgtattcag atttctctca tctcgaatat taaatatttc aataattata atcgtgtctt       240
     aagtgtgttt tattgagcga acactatttc gcaatctacg cctctacaac a                291
//
ID   Copia-28_AA-I repbase;    DNA;    INV; 4170 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 24.04, Created)
DT   22-JAN-2019 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-28_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4170
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4170
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(4), 630-630 (2019).
XX
DR   [2] (Consensus)
XX
CC   A consensus; LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..4160
FT                 /product="Copia-28_AA-I_1p"
FT                 /translation="MSTDSNADSTGSVAAGGRTAGGVADARIGAVGGSISL
FT                 PAVDKLRGRENYSTWAFATKMLMIREGTWDAVTRQEQDPEDALSLRALATI
FT                 CLSIEPINYSLVQNAKTAKQAWKNLQDAFRDDGMTRRIGLLRKLTSIRLSE
FT                 CSSVEEYVNELMSTSHKLTEVGFVVDDTWLACLLLMGLPETYEPMIMGLEA
FT                 SGIRITADAVKAKILQDVKISGVSMGDSKQEAFYSKKKTVNRKKTDKSKIQ
FT                 CYRCKQFGHFASECQQKGPNEPKDKKEKSGKRNAAMTTFEKPKKSEMDWFF
FT                 DSGATSHMCSSKAFLQDAQEASQHVSVANDAELSVVATGNVAMEADIGGES
FT                 CDLTISDVLCVPEIAINLLSVSRICSKGYSVQFTRDACEVRSDSGELVAVG
FT                 QETSGLYKLCLTNKQVSCAAKSTGDIILWHRRMGHLNEQSLMKLRNLADGV
FT                 DFGNAKIPTCVTCLEGKHFRQPFNNEGTRATEVLELVHSDLCGPMEQESIA
FT                 GSRYFLSLIDDASRKLVVYFLKSKTEVLDCFKEYKALMENQTGKRIKXLRT
FT                 DNGTEYVNKEMKRFLRSCGIRHETTVPYNPEQNGLAERMNRTVVERARCLL
FT                 LDAGLDKHFWAEATAMATFLINRSPTKGVPVTPEERFTGKRPDLSGLKVFG
FT                 AKVMCYIPKQRRRKWDAKSEPGIFVGFAYQSKGYRVYLPRTKTVQIVRDAV
FT                 FISEEEQFSAEVPEDVFPESRTTMNQMLISDESSAGGVDRPAKILEDGHEA
FT                 CGGAGEELEDVAEAGSNDGYGPLYISATESLESSSAESVALPSQPVDPLAI
FT                 RRSERERNIPGKYQDYDMTFSVVPKRLSVSQEPPPDSDVGEPQSFHEAMKS
FT                 GEKQLWQRAMEEEFHALQANYTWELTDLPPGRKALKCKWVLKKKMNSDGSL
FT                 DRHKARLVIKGFSQVKGIDYNETYSPVVRYASIRYLMAMAAQLDLQVHQMD
FT                 AVTAFLQGDLSGEEIFMEQPEGFVHKDPRKVCRLKKALYGLKQASRVWNVK
FT                 LDTELKRIGXKRSSYDPCVYYMTDGKWIIIIAVYVDDLLLFSNDPEWLDSV
FT                 KRQLSAKFRMKDLGEARQVLGMRITKTGDTIALDQQRYIEELLRKFNMVDC
FT                 NPTSTPAEVNQRLVKAMSPKTQQDKERMQNIPYRELVGGLQFLAQCTRPDI
FT                 AYAVNAVSSFCSNPGEAHWTAAKRILRYLQGTKSLGLVFRKTSSAAFEGYS
FT                 DADWGNDPDSRRSVTGYLFQFGSGSVSWSSRKQPTVALSTMEAEYMAMSAA
FT                 SQEALWWRGFRAELLGRKEPIIIHCDNRSALCLAEKEIGYSPRSKHIDVRH
FT                 HFVREQLENRTIQLKYISSGDQKADALTKPVSGQLKSVFGISQIRG"
XX
SQ   Sequence 4170 BP; 1139 A; 877 C; 1235 G; 916 T; 3 other;
     gttatgggcc gcagtaaaac gaaaagttaa ttgcgcgata aaatagttgt tccgattaag        60
     tttttcgcga gtgtcgtgcc gggagaatgt cgacagattc gaatgcagac agtacaggat       120
     cggttgctgc tggaggacgc acagccggcg gagtggcaga tgcgagaatc ggcgcagttg       180
     gaggaagcat ttcgcttccg gcagtggata agttgcgtgg ccgggagaat tattctacgt       240
     gggcgttcgc caccaagatg ctgatgatcc gggaaggcac ttgggacgca gtcacacggc       300
     aggaacagga tccggaagat gcactttcgc tgcgggcatt ggcgacgatt tgcctcagca       360
     tagagccgat aaattacagc ctggtgcaga atgcgaaaac ggcgaagcaa gcgtggaaga       420
     atctgcagga tgctttccgc gacgatggaa tgacacgacg aataggattg ctccggaaat       480
     tgacaagtat ccgattgtcg gagtgttcgt cggtggagga atatgtgaac gaactcatgt       540
     cgaccagcca taagttgact gaagttggtt ttgtggtcga tgatacctgg ctagcgtgtc       600
     tgttgttgat gggtttgccg gagacctacg aacccatgat catgggtctg gaagcatcgg       660
     gaattcgtat tacagcggac gcagtgaagg ctaaaatcct ccaggacgtg aaaatcagtg       720
     gcgtttcgat gggagacagc aaacaagaag cgttctacag caagaagaag actgtcaaca       780
     ggaagaagac cgacaaatcg aagattcagt gctacaggtg caagcaattc ggtcattttg       840
     cttcggagtg ccagcagaaa ggaccgaatg aaccgaagga taagaaggag aaatctggca       900
     aaaggaatgc agcgatgacc actttcgaga aaccgaagaa aagcgaaatg gattggttct       960
     tcgattcggg agctacatcg catatgtgca gcagtaaggc gtttttgcaa gatgcgcagg      1020
     aagcgtcgca gcatgtgagt gtggccaacg atgctgaact atctgtggtt gctaccggga      1080
     atgtggcgat ggaagcagac attggtggag agtcatgcga cttgacgatt tccgatgttt      1140
     tgtgcgttcc ggagatagca atcaaccttc tttcggtcag taggatatgc agtaagggct      1200
     acagcgttca gttcaccagg gatgcatgtg aggtgcggtc cgatagtggc gagttggtgg      1260
     ccgttggtca ggaaacgagc ggactgtaca agctgtgttt gaccaacaag caagtctcgt      1320
     gcgctgctaa gtcaactggt gacatcatac tttggcatcg caggatgggg catctgaacg      1380
     aacaaagttt aatgaagctc cgaaacttgg cagatggagt tgatttcggt aatgccaaga      1440
     ttcctacttg cgtcacatgt ctggaaggga aacattttcg acagccgttc aacaacgaag      1500
     gaacacgagc gaccgaggta ctagagctag tccactcgga cctgtgtggc ccgatggagc      1560
     aggagtcaat cgccggtagc agatactttc tgtcgctaat cgacgatgcc agtcgcaagt      1620
     tggtcgtgta ctttctgaag tcgaaaacag aggtactkga ctgcttcaag gagtacaaag      1680
     ctctgatgga aaaccagacc ggtaagagga ttaaagsact tcgcactgat aacggcaccg      1740
     agtatgtaaa caaggagatg aaacggttct tgcgcagctg tggtattcgc catgaaacga      1800
     cggtaccata taaccccgag caaaatgggc tggcggagcg catgaacagg acggtcgttg      1860
     agagggctcg atgtttactt ttggatgcag gcctagacaa gcacttctgg gcagaagcta      1920
     cagcgatggc gacatttttg ataaaccgat caccgaccaa gggtgttccg gtgacgccag      1980
     aggagcgttt cacgggaaag cgaccggact tgtcgggact gaaggttttt ggagcaaaag      2040
     tgatgtgcta cattcccaag cagcgtaggc ggaagtggga cgccaagtct gagccgggca      2100
     tcttcgttgg ctttgcgtat cagtcgaaag gatatcgagt gtacctaccg aggacaaaaa      2160
     cggttcagat tgttcgagat gcagttttta tcagcgaaga agagcagttt tcggcagaag      2220
     ttccagagga tgtatttccg gaaagccgaa caacgatgaa ccagatgctg attagtgacg      2280
     aatcgagtgc agggggagta gatcgaccag ccaaaattct cgaagacggt catgaagcct      2340
     gcggcggagc tggagaagaa ctggaagatg ttgcagaagc cgggagcaac gatggctacg      2400
     ggccgttgta cataagcgca accgaatctc tggaatcatc gtcagcagaa tccgtcgcgc      2460
     tcccttcaca accagtagat cctctcgcga tcaggcgcag tgaacgggag cgcaatatac      2520
     caggcaagta ccaagattat gatatgacgt tcagtgttgt ccctaaaaga ttatccgtgt      2580
     ctcaggaacc gccaccggac agcgacgttg gtgagccgca gtcttttcat gaagcgatga      2640
     aatccggcga aaagcagttg tggcagcgtg ctatggagga ggagttccac gcattacaag      2700
     cgaattatac ctgggagttg acggacctac caccaggacg gaaggcccta aagtgcaaat      2760
     gggtgctgaa gaagaagatg aactcggatg gatcattgga ccggcacaag gcccgtctcg      2820
     tgattaaagg attttctcaa gtgaagggca ttgactataa cgagacatac tctccagtgg      2880
     tcagatatgc cagtatccgg tatctgatgg ctatggcagc tcagttggac ttgcaagtcc      2940
     atcagatgga tgcagtcaca gcttttttgc aaggggacct gtcaggtgag gaaattttca      3000
     tggaacaacc cgaaggtttc gttcacaagg atccacgaaa ggtttgtcga ctgaaaaagg      3060
     cgctgtatgg cctgaaacaa gccagccgtg tctggaacgt gaagttagac acagaactga      3120
     agagaattgg cwtgaagcga tccagttatg atccttgtgt atattacatg acggacggaa      3180
     agtggatcat catcattgca gtttacgtcg acgatttgtt attgttctca aacgatccag      3240
     agtggcttga ttcagtgaaa cgtcaactgt cagcgaagtt ccgtatgaag gatttgggcg      3300
     aagccagaca ggtgcttgga atgcggatta caaagacagg tgacactatt gcgttggatc      3360
     agcaacggta cattgaggag ttacttcgga agttcaacat ggtggactgt aatccgacgt      3420
     cgacaccagc tgaagtgaat cagcggcttg tgaaagcgat gagtccgaaa acacagcagg      3480
     ataaggagag gatgcagaac attccatacc gtgagctagt aggtggactg cagtttttag      3540
     ctcagtgcac tcgtcccgac attgcgtatg cggtgaatgc agtcagcagc ttctgtagta      3600
     acccaggtga ggctcactgg acagccgcaa agcgcattct tcggtacctg cagggtacca      3660
     aatcgctggg attggtcttt cggaagacgt ctagtgcggc atttgaagga tacagcgatg      3720
     cggactgggg aaacgaccca gattcacgac ggtcagtcac aggatatctg ttccagttcg      3780
     gaagcggatc agtgtcgtgg agcagcagaa agcagccgac cgttgcgctc tctacgatgg      3840
     aggccgagta tatggcgatg tcagcggctt cgcaggaagc gttatggtgg cgtggcttcc      3900
     gcgcagagtt gctcggaagg aaagaaccga tcatcatcca ctgtgacaac cgcagtgcat      3960
     tatgcttagc ggaaaaggag attggctatt cgccgagaag taagcacatt gatgtgcgac      4020
     atcactttgt ccgagaacag ttggagaacc gtacaattca gttgaagtac atcagttcag      4080
     gtgaccagaa ggcagacgcc ctaactaaac cggtctctgg acagttgaag tcagttttcg      4140
     gaatctcaca aattcgcggt taagggggag                                       4170
//
ID   Copia-28_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   22-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-28_AA_;
KW   Copia-28_AA-I; Copia-28_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 955-955 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 146 BP; 45 A; 33 C; 20 G; 48 T; 0 other;
     tgttgaccag tgtaactgtc gaatttattt aacccattta ctctgtattt acccaagcga        60
     caataaacgt gtatctttgt cagttcatta aatcaaacca aaacaaacgc acgcgttttt       120
     catgtatgct ctgcaaattc ccatag                                            146
//
ID   Copia-28_SI-I repbase;    DNA;    INV; 4138 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 19.02, Created)
DT   02-JAN-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-28_SI_;
KW   Copia-28_SI-LTR; Copia-28_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4138
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 432-432 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [1530-2072] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(351..1781,1785..3263)
FT                 /product="Copia-28_SI-I_1p"
FT                 /translation="MIETLAGIFQRKSVSSQIFLRKELLMMKYNVADAMCD
FT                 HFMQFDSKIRQIKDAGGTLAEIDIICHLLLTMPDSYDNLIVSIESMDPTKL
FT                 TLEYVKGRLLDETNKRKAGKSNTKSSGAHAMSANITCFWCGKAGHLKSPCK
FT                 FRKGKYVKKGANQKNVESTSKKDAKDAAANNAEAFTLCAVVEESSSKNDIA
FT                 HAHTCVDKDKGGMERNDATQIKFILDSGASEHMVNNPSYFEKLTNVEEINI
FT                 AVAKKDEKLRATQKGNIKVKMLHNGDGESRIVQDVLLVKDLKCNLMSIRSL
FT                 ARKGYQVTFKDDHAYVSFNGNIKFVAHTNGKLYEATFQLDQEFAGLANEQQ
FT                 ASNLWHFRLGHLNVNDVKKLIDRKMAEGLERVNIKTETEFCESCVMGKQAR
FT                 LSYPQYKKGRSNRILELVHSDVCGPMSQPAWDGSNYFVTFTDDYSRATMVY
FT                 CIKQKSDVFEKFQEYASVAETLHGCKIAKLRVNGGEYMSNRFKQFCRDKGI
FT                 QMITTVPYNPEMNSIAERLNRTLCEKARSMLIAGGIERRFWNEAILAANFL
FT                 RNRSPTNAFGEQFTHKTPAELWFKQKPNLGFIRIFGSICYNHIPAEKRTKL
FT                 DAKTTKCIFLGYASSYTYRLWDIEANKLIIGRNVTFNEGIILNRSKMVQIS
FT                 DSEAANKPEAKEEVGEEFLNKTLVNNDTSMDTSNDVFVDAKEDNTDGNVLR
FT                 RSQRTRQEPDRYGEWMAHFAFSAEHFVGNGPTSIEEAKKREDWHKWKEAIN
FT                 NEYESLIKNAAWTLCDPPKDRKIISCKWVFKIKHKANGEIDKYKARLVARG
FT                 FTQTPGFDYTETYSPVAKLTTLRIILSIANQHDMYIHQMDVKGAFLNGKLI
FT                 EEIYMEQPEGFKNGKKVCKLNKAIYGLKQASRAWNEQFNQFMLRIGFSRCI
FT                 SDQCLYMRNKDAIPCFILLYVDDVLIICRDVTTIDVIKRLLSNEFEMTDLG
FT                 EADTFLGIHIERDIK"
XX
SQ   Sequence 4138 BP; 1452 A; 696 C; 915 G; 1072 T; 3 other;
     ggttatgggc ccagggagaa tttaattgga aagataggtt atagacttgt gaatcagaaa        60
     ttgtttctca attaagtacg gcactgcacg atagcacgat tcatacgggg attccgttat       120
     tcgacggcac aaactacaac aactggtatt atcgtttgga gacatatctg gacgagaagg       180
     acttggtaaa atttatcaat gaagatttaa gttcgttgtt ggaaaagacc gttggagaag       240
     aagctaaaaa caagctgcgg gcggatgaaa agaaatgtaa gtctactatc gttaagagta       300
     cgcatgatag ccagctcgag tgtattaaag gtaagcaaac agccaaagaa atgattgaaa       360
     cgcttgctgg tatatttcaa cgaaaaagtg tttccagtca gatattccta cggaaagaac       420
     ttctgatgat gaagtacaac gtagctgatg caatgtgcga tcatttcatg caatttgact       480
     caaagattcg acagattaaa gatgctggtg gaactcttgc agaaatcgac attatctgtc       540
     acctgctgct tacgatgcca gatagttacg ataatttgat tgtgtcgatt gaatcaatgg       600
     atccaacaaa actcacgttg gaatatgtna aaggacgctt gttggacgaa acgaacaagc       660
     ggaaggcagg caaatcaaat acaaaaagta gcggagcgca tgcgatgagt gctaatatca       720
     catgtttctg gtgcgggaag gctggccatc taaaatcgcc atgtaaattc cgaaaaggaa       780
     aatacgtcaa gaaaggtgca aatcaaaaga atgtcgagtc tacttcaaag aaggatgcaa       840
     aggatgctgc tgcaaataac gccgaggcat ttaccttgtg tgcagttgtc gaagaaagca       900
     gcagtaagaa cgatatagca catgcacata cttgtgtgga taaagacaaa ggaggcatgg       960
     aacggaatga cgcaacacaa ataaagttta ttctggactc aggagcatcg gaacatatgg      1020
     ttaacaatcc atcttatttt gaaaaattaa ctaatgttga ggaaatcaat atcgcagtag      1080
     ctaagaaaga cgaaaaatta agggctacgc aaaaaggtaa cattaaagtg aagatgctac      1140
     ataacggaga cggagaatca agaatcgttc aagacgttct gcttgtcaag gatctgaagt      1200
     gcaatttaat gtcaattcgg agtttagcaa gaaaaggata ccaagttaca ttcaaggacg      1260
     atcatgcata cgtgtcattc aatggcaata taaaatttgt tgcacacaca aatggaaaac      1320
     tctacgaagc aacatttcaa ctcgatcaag aatttgcagg tttggcaaac gaacaacagg      1380
     caagtaattt atggcatttt cgattaggtc atttaaatgt aaatgatgtt aagaaactaa      1440
     ttgatcggaa aatggcagaa ggacttgaac gagtaaatat taaaacagaa acagagtttt      1500
     gtgagtcatg tgttatgggt aaacaggcac gattgtccta tccgcaatac aaaaagggac      1560
     gatcaaatcg tatcctggaa ttagtacata gtgacgtatg tggtccaatg tcacaacctg      1620
     cttgggatgg ctcaaactat tttgttacgt ttacagacga ttattcacgt gcaacgatgg      1680
     tctactgcat taaacagaag agcgacgttt ttgaaaaatt tcaagaatat gcttccgtgg      1740
     ctgaaacatt gcatggatgt aaaattgcaa agctacgtgt aganaacggt ggtgagtata      1800
     tgtcaaacag attcaagcag ttttgtagag acaaaggtat tcaaatgatt actacggtgc      1860
     cgtacaatcc tgagatgaat tcaattgctg agcgtttaaa ccgaacgctt tgcgaaaagg      1920
     cccgatccat gctaattgcg ggaggtattg aacgacgttt ctggaatgaa gcgattcttg      1980
     cagcaaactt tttaaggaat cgctcgccta ccaatgcttt tggagaacaa tttacacata      2040
     agactccagc agaactttgg tttaaacaaa aaccgaattt aggatttatt cgtatttttg      2100
     gttcaatctg ctataatcat atccctgccg aaaaacgaac gaagctcgac gcaaagacga      2160
     ctaaatgtat atttctcgga tatgcatcat catacacata tcgtttatgg gatattgaag      2220
     caaataaatt aataattggt cggaacgtga cgttcaatga aggaataata ctaaacagaa      2280
     gcaaaatggt tcagatctcg gattcagagg cggcgaataa accagaggct aaagaggaag      2340
     taggagaaga gtttttgaat aaaactctcg taaataatga tacatctatg gatacatcaa      2400
     atgatgtctt tgtcgacgct aaagaagata acacagatgg taatgtttta cggcgtagtc      2460
     aacgcactcg tcaagaacca gatcgctatg gtgaatggat ggcacatttc gctttttctg      2520
     ctgaacattt cgtcggaaac ggaccaacat cgattgaaga ggcaaagaaa cgcgaagatt      2580
     ggcataaatg gaaagaggct ataaataacg aatatgaatc gctcattaaa aatgctgcat      2640
     ggactctttg tgatccacca aaagatagaa aaatcatttc gtgcaaatgg gtctttaaaa      2700
     taaagcacaa agcgaatggt gagatcgaca agtacaaagc acgtttagtg gcgcgtggct      2760
     tcacacagac ccctggtttt gattacactg aaacttactc tccagtggca aagttgacaa      2820
     cattacgcat catattatca attgcgaatc aacacgatat gtacattcat caaatggatg      2880
     taaagggagc atttttaaac ggaaaactta ttgaggagat atacatggag caacctgaag      2940
     gcttcaagaa tggtaagaaa gtatgtaagc tgaataaggc catatatggg ttgaaacagg      3000
     catctcgcgc ctggaacgag caatttaatc agtttatgct gcgaattggt ttcagtcggt      3060
     gtatatcgga tcaatgtttg tacatgcgaa acaaggatgc aattccttgt tttattttat      3120
     tatacgtcga cgacgtttta ataatttgtc gtgacgtaac aacgattgat gtcatcaagc      3180
     gattgttaag caacgaattt gagatgacgg accttggtga agcggacaca ttcctcggaa      3240
     tacacattga acgtgatata aaaaanggaa caatcagtat aagtcaaaca caatatttga      3300
     agaacgtact acaaaaattt ggcatgagca actgcaaaag tgtttcgaca ccaatggagg      3360
     ctggactcaa attaaaaaag ggtaatcaag acgaatcgaa aggtattcct tatcgtgagt      3420
     taattggttg tttaacatat gcagcgttaa ccacgagacc agatttaagc gctggaacta      3480
     attacttcag tcagtatcag aattgttaca caaatgagca tttcacacat gcaaaacgga      3540
     ttttacgtta tatttctggt actatcaata caaagatgac tttttgcaag ggcaatccaa      3600
     atgatattct gactggattt actgatgcag actgggcgaa cgacatggaa gaacggaaat      3660
     ctatcactgg atatatcttc gaagtttatg gcaacacagt gagttgggct tcgcgtaagc      3720
     agtcgacaat cagtttatca tcaacagaat cggaatatgc tgctctagaa gaaggaatct      3780
     gcgaggcgaa gtggattcga ggtctactca aagagattgg atacatatgt aaatcatcaa      3840
     ctacgattta catcgataat cagtcgacaa tcaaagtggc tgaggaaccc cgtgctcatc      3900
     gaagaatgaa acacgttgac gtgaagtttc atttcataca agaaagcatc aaagatgggg      3960
     aaatcaattt ggaatacaag tcaactggag accagacggc tgacatcatg acaaaggctc      4020
     ttggaagaaa cttatttgaa aaacatcgtg ctaacttgaa tttgatttaa tggactttga      4080
     cacaaaaaaa ataagttact acttaaatta agaggcggta ttaaaggtag taatttca        4138
//
ID   Copia-28_SI-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 19.02, Created)
DT   02-JAN-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-28_SI_;
KW   Copia-28_SI-I; Copia-28_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-235
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 433-433 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 235 BP; 57 A; 55 C; 32 G; 90 T; 1 other;
     tgcgtaacta ttattgtaaa cgcgccttct ctattggtta gcagcgcctc tagtttattc        60
     tagtttttag ttttgaccgt cttggtaact ttacgaactc ttngtcgttc actacttgac       120
     ctgagttctc ttacgataca tatataacct cttatctttt tcatctgaat aaaaacacat       180
     tttgttcatc agcattccaa acgaatactg tgtgctctgc cttcaaatcc catca            235
//
ID   Copia-29_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-29_AA_;
KW   Copia-29_AA-I; Copia-29_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 956-956 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 209 BP; 53 A; 53 C; 36 G; 67 T; 0 other;
     tggtgaattt accatcacag ctactcagtg ggctatgttg cccccatcga aggtgacacc        60
     actgctgaga gaaataacaa agacaacaac acttccgttt ttcattccat gtttcttttc       120
     tcgtgaataa acacgctttt tatttgaact cgctaatttc gtcagtctcg ctagtttttc       180
     cttgtgtggc catccgaaga accacttca                                         209
//
ID   Copia-29_CQ-I repbase;    DNA;    INV; 4421 BP.
XX
AC   AAWU01004852;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-29_CQ_;
KW   Copia-29_CQ-LTR; Copia-29_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4421
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 367-367 (2011).
XX
DR   GenBank; AAWU01004852; Positions   83162   87582.
XX
CC   Positions [1640-2143] - Integrase core
CC   'TTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           170..3253
FT                 /product="Copia-29_CQ-I_2p"
FT                 /translation="MEYEQNPRVYLYNGKNWPNWSLRMEAYLRELKIFHCV
FT                 QRTLEQEPFFPAVEADDAAEQARKEALRNVRREEDAKCVSVLLHKIADSQL
FT                 ERIRGKRSPKAIWDTLQKAFDKKGVSGVFLLLNQFTTLRYDEEQDMEEHIL
FT                 EFERVVRELEAANIKFVEPVQVFFLLQSMPKSYAQLITVLKTLPVEQCSME
FT                 FIKSRLLNEDVERHHLAVKVEPKAEPSSAFAGKGGKFTFKCHACGKPGHKK
FT                 ADCPEKEKAEQAAGSSHRRKKGKAHAAETKDGANDDVSFVSVAQEANSVET
FT                 HEKFRWVLDSGASEHMVGEKGLLVNVRRMESPTVINVAKAGVTLEGRYVGD
FT                 VKMKADIGTRTLNCTVRDVLYVPGLLTNLFSVKKVAERGMEVIFGQKGARI
FT                 TKDGEVKCTAKQNGRLYELDVKVVRGSAMVGESESKLSLWHRRYGHIGNTG
FT                 LMKLIRNEMVEGLDVGKNAKPEKEICECCMKGKQARLPFEEATKPRSSRPL
FT                 ELIHSDVCGPFNPASWNGKKMFVSFIDDYTHFAAVYILEAKSEVLDAFRKY
FT                 AAMATAHFGTKIARLRSDNGREYINTEFKKYCNDAGIVMEPTVPYTPEQNG
FT                 KSERFNRTVMERARAMMEDAEIDWNMWSEAVLAAVHLINRSPTAALRDAKT
FT                 PYEMWFGRKPNVSKLRVFGSKAYTHIPKEKRSKLSAKSHVCVLVGYGMNGY
FT                 RLWDPVKKQVIVARDVKVEEKVMHKQVYTDDHMVSDSIVRQQEHEELDSDD
FT                 DPDPEQEEEEVVEVLVDSEAESESDDEVFDQEVPEEEDQVPEENAVPEQEE
FT                 AAAERRSGRARKRPARFSDYELEQKRPARHDHDVCVAFALNAEAYVDEIPD
FT                 TIEALQKRDDWPLWKRAIDDELRSLEKNRTWDLVEAPAGRRVVSCKWVFRI
FT                 KKKEDGTAARYKARLVAKGCSQRAGYDYQETYAPVVRMSTVRTLLAVAVQQ
FT                 NLHLHQMDVRTAFLNGHLNETVYMRQPPGFERGSKVCKLNKSLYGLKQAPR
FT                 SWNERFNQFILKLGFKRSPYDC"
FT   CDS           3142..4422
FT                 /product="Copia-29_CQ-I_1p"
FT                 /translation="MQAKQIPVRLEAGAKELEREVQPVHPQAGVQAVAVRL
FT                 LNETVYMRQPPGFERGSKVCKLNKSLYGLKQAPRSWNERFNQFILKLGFKR
FT                 SPYDCCLYTKVTKDVKLYLVLYVDDIVLASNSLEELKNVKVQLAKEFEMED
FT                 LEELRNFLGLKIERDVEKGTLTINQSQYVSGLLKRFGMEQCKPLGTPLEAN
FT                 VKLARKKDEEAVTEHPYRELIGCLTYLMLSSRPDISIAVNFLSRFQSAATD
FT                 THWIHLKRVLRYLQGTKEFSLEYKRSETADPLVGFADADWGSDIDDRRSTS
FT                 GFVFKVFGNTVSWTSRKQATVSLSSTEAEYVSLSQAACESIWLMNLLSDFG
FT                 IVLDAPAVIHEDNQSCIHIAEEPRDQKRMKHLDIRYNYIRECIQDELIKVQ
FT                 YIPTKDQLADVFTKGLPAVSYKKHRSTLGLRGG"
XX
SQ   Sequence 4421 BP; 1109 A; 1075 C; 1405 G; 832 T; 0 other;
     ggttgtgtgg cccagcacat cgcgtggcgc gttgccatag taaccgcgac cggaaggaat        60
     tttttttttt tccacgtgcg cagagttcgg gaaggtgacg ccattttttg cgattcgttt       120
     tgagttaagt tttttcggga agtaagacgc ggaaagaaac gtgctcgcga tggaatacga       180
     acaaaatccg cgagtgtacc tgtacaacgg gaagaattgg ccgaattgga gtcttcggat       240
     ggaggcctac ctccgggaac tgaagatttt tcactgtgtt cagcggacgc tggaacagga       300
     accgtttttc ccggcggtgg aggcggatga tgctgcggaa caggcgcgga aggaagcgct       360
     tcggaacgtc cgaagagaag aggacgcgaa gtgtgtgtcg gtcctgctcc acaagattgc       420
     cgactcgcag ctggaaagaa tccgtggaaa gcggtctccg aaggccattt gggacaccct       480
     ccagaaggcg ttcgacaaga agggagtttc cggcgtgttt ctgctgttga accagtttac       540
     caccttgcgg tacgacgaag agcaggacat ggaggagcac attctggagt tcgagagggt       600
     ggtccgggag ctggaagcgg ccaacatcaa gttcgtcgag ccggtgcaag tgtttttcct       660
     gctgcaatcg atgccgaagt cctacgccca gctgattacc gtgctgaaga cgttaccggt       720
     cgagcaatgc tcgatggaat tcatcaagtc acggcttttg aacgaggacg tggaacggca       780
     ccatcttgca gtgaaagtcg agcccaaggc ggagccgagt tcagcgtttg cgggaaaagg       840
     cggcaaattt acgttcaagt gccacgcctg cggcaaacct ggacacaaga aggcggactg       900
     cccggagaag gagaaagcgg aacaggccgc cggaagctcg catcgccgga agaaggggaa       960
     ggcacacgcg gcggaaacga aggacggtgc caacgatgac gtgtcgtttg tgtcagtagc      1020
     gcaagaagcc aacagcgtgg agacacacga aaagttccgg tgggtgctgg acagcggtgc      1080
     gtccgagcac atggttggcg agaagggtct actggtcaac gtacgacgga tggaatcccc      1140
     cacggtgatc aacgtggcca aggctggagt gacgctcgag ggtcgctacg ttggtgacgt      1200
     caaaatgaag gccgacatcg gaacacggac gttgaactgc acggttcgcg acgtcctgta      1260
     cgtgcctgga ttactgacga acctgttctc cgtgaagaag gttgccgagc gcggcatgga      1320
     ggtgattttt ggccagaaag gggcgcgaat cacgaaggac ggagaggtca agtgtacggc      1380
     gaaacagaac gggcgtttgt acgagctgga tgtgaaagtc gtgcgtggat cggccatggt      1440
     tggtgagtcg gagagcaagt tgtcgctgtg gcatcgccgg tatggacaca tcgggaatac      1500
     tggtctgatg aagctgatcc ggaacgagat ggtcgaagga ctggatgttg gaaagaacgc      1560
     gaagccagag aaggagattt gcgagtgctg catgaagggg aagcaagcga ggttgccgtt      1620
     cgaagaagcg accaagcctc gttcctcgcg tcccttggag ctcatccact ccgacgtgtg      1680
     tggcccgttc aacccggcat cctggaacgg caagaagatg ttcgtgagct tcatcgacga      1740
     ctacactcac ttcgctgctg tttacatcct tgaggcgaag agtgaggtgt tggatgcgtt      1800
     ccggaagtac gcggcgatgg ccactgctca cttcggaacc aaaattgccc gactgagaag      1860
     tgacaacggc cgtgagtaca tcaacaccga gttcaagaag tattgcaacg acgctggtat      1920
     cgtcatggaa ccgaccgtac cgtacactcc ggaacagaac gggaaatcgg agcggttcaa      1980
     ccggacggtg atggagcgtg cacgtgctat gatggaggac gcggaaatcg actggaacat      2040
     gtggagtgaa gcggtgctgg ctgcggtgca cttgatcaac aggagtccca cggctgcgct      2100
     tcgggacgcg aaaacgccgt acgagatgtg gttcggacgc aagccaaacg tgtcgaaact      2160
     gcgtgtcttc ggcagcaagg cgtacaccca cattccgaag gagaagcggt cgaagctgag      2220
     cgcgaagagc catgtgtgtg tcctggtcgg ctacgggatg aatggctatc gtctgtggga      2280
     tcctgtgaag aagcaagtga tcgtcgccag agacgtaaaa gtggaagaaa aagtgatgca      2340
     caagcaagtt tacacggacg atcatatggt ctcagattct atcgtgcgcc aacaagaaca      2400
     cgaagaactg gacagtgacg atgatcctga tccggagcaa gaagaagaag aagttgtgga      2460
     agtgctagtg gactcggagg ccgaatccga gtcagatgac gaagtctttg accaagaagt      2520
     gcccgaagaa gaagaccaag tgccagaaga gaacgcagta ccggagcagg aggaagctgc      2580
     ggctgaaaga agaagcggac gtgccaggaa gcgtccggcc cgattctccg actacgagtt      2640
     ggagcaaaag cggcctgcga gacacgacca cgacgtctgc gtcgcctttg cgttgaacgc      2700
     cgaggcctac gtggacgaga ttcccgacac cattgaagcg ctgcagaaac gcgacgactg      2760
     gccgctgtgg aagcgtgcta tcgacgacga gttgcggtcg ctagagaaga accgcacgtg      2820
     ggacctcgtc gaggctcctg ctggtcgccg agttgtgtcc tgtaagtggg tgttcagaat      2880
     caaaaagaag gaagacggta ccgctgccag gtacaaagca cggctcgtcg cgaaggggtg      2940
     ctcgcaacgt gcggggtacg actaccagga aacgtacgcc cctgtcgtcc ggatgagcac      3000
     cgttcgcacg ctgctggctg tagccgttca gcaaaatctt cacctgcacc agatggatgt      3060
     ccgtacagca tttctgaacg ggcacctgaa cgaaaccgtg tacatgcgac agcctccagg      3120
     atttgagagg gggagtaagg tatgcaagct aaacaaatcc ctgtacggct tgaagcaggc      3180
     gccaaggagc tggaacgaga ggttcaacca gttcatcctc aagctggggt tcaagcggtc      3240
     gccgtacgat tgctgaacga aaccgtgtac atgcgacagc ctccaggatt tgagaggggg      3300
     agtaaggtat gcaagctaaa caaatccctg tacggcttga agcaggcgcc aaggagctgg      3360
     aacgagaggt tcaaccagtt catcctcaag ctggggttca agcggtcgcc gtacgattgc      3420
     tgtctgtaca cgaaggtcac gaaggacgtt aaactgtacc tggtgctcta cgtggacgac      3480
     attgtgctgg cgtccaactc tctggaggag ctgaagaacg tgaaggtgca gctggccaaa      3540
     gagttcgaga tggaagactt ggaggagctt cggaacttcc tagggctgaa gatcgagcgc      3600
     gacgtcgaga aaggtacgtt gaccatcaac cagtctcaat acgtttccgg gttgctaaag      3660
     cgatttggga tggagcaatg caagcccctc ggaacgccgc tggaagcgaa cgtgaagctg      3720
     gctcgcaaga aggacgagga agcagtcacg gaacatcctt accgtgagct aatcggatgc      3780
     ctcacgtatc tgatgctgtc gtcgcggccc gacatcagca tcgcggtgaa cttcctgagc      3840
     cgtttccaga gcgccgccac tgacacgcat tggatccact tgaagcgtgt cctgcggtac      3900
     ctgcaaggaa cgaaggagtt cagcctggag tacaaacggt ccgagaccgc cgacccgctg      3960
     gtgggatttg cggacgcgga ctggggaagc gacatcgacg atcgccgctc aacatctggg      4020
     ttcgtgttca aggtgttcgg caacacagtc tcgtggacaa gcaggaagca agccactgtg      4080
     tcactctcgt cgaccgaagc cgaatacgtg tccctcagcc aagctgcctg cgaatcgatt      4140
     tggctgatga acctgctgag cgatttcggg atcgtgctgg acgcgccggc tgtaattcac      4200
     gaggacaacc agtcgtgcat tcacatcgcg gaggagccac gagaccagaa gcggatgaaa      4260
     cacctggata tacgctacaa ctacatccgt gagtgtatcc aggacgagct catcaaggtg      4320
     cagtacatcc cgacgaagga ccaactcgca gatgtcttca ccaagggcct cccagctgtt      4380
     tcttacaaga agcatcgaag cacgttagga ttgagagggg g                          4421
//
ID   Copia-29_CQ-LTR repbase;    DNA;    INV; 144 BP.
XX
AC   AAWU01004852;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-29_CQ_;
KW   Copia-29_CQ-I; Copia-29_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-144
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 368-368 (2011).
XX
DR   GenBank; AAWU01004852; Positions   83018   83161.
XX
SQ   Sequence 144 BP; 40 A; 40 C; 27 G; 37 T; 0 other;
     tgttggaagt caagcctaag tgcggccctt gaagattagt ttaagttagc tttaggcgca        60
     gtaggccatg ccacgcgcaa actttataaa aactccaccc actgtgaatt cctcctcttt       120
     ccccgaataa acaccaactc gtca                                              144
//
ID   Copia-29_DP-I repbase;    DNA;    INV; 4104 BP.
XX
AC   super_92;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-29_DP_;
KW   Copia-29_DP-LTR; Copia-29_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4104
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1491-1491 (2012).
XX
DR   Genome; super_92; Positions   80578   76475.
XX
CC   'ATATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..1325
FT                 /product="Copia-29_DP-I_2p"
FT                 /translation="MPKGPIQKVQLYQKLIRLNMQQGDDVSAYVNSFVETI
FT                 EKLAELDIKLHDELKVIMLLSSLPKSWENFVVAIETRDELPKFEALKVKML
FT                 EEGTRKQEKAERENHSATQAVYTHTQRRSRENENVENNGTKNDGNTGVKQQ
FT                 FKGKCFKCEKTGHRASECRSKKKGSKTNGQREQASSLMHCFVGEQQKRVWC
FT                 VDSGATSHMCCDRSMFLNYVEKETSIMLATNKFVSSPGSGNVKILGENILI
FT                 NLQNVLYVPELHMNFFSVSTAAKFENSTTFIGKVALIKNKKGETIIKAKQE
FT                 NNLYVYKQCSEKSAVYMV"
FT   CDS           1282..4065
FT                 /product="Copia-29_DP-I_1p"
FT                 /translation="MCTNSAQKKVQFIWFNRFGHLNFQDLKQLNDKQLVHG
FT                 MNFENVKMEINCDTCNRAKICALPFQQKLNRTTEQVLELVHTDVCGPMNVK
FT                 SIGGNRYFVTFIDDYSRKIFVYIMHAKSQVFEKFKMFKSFVECQTGNKIKA
FT                 VRSDNGTEYVNKEFSGFLNECGIQRQLTVPYTPQQNGVAERANRTIIEMAK
FT                 SMLIHAKLEEFLWAEAVTTAVYLRNRCPTKALSGGTPFEAWKGRKPSVKHL
FT                 RVFGSRAFALYKTRRSKFQAKGKEYIFVGYSFTAKAYRLYDRENRTIIERR
FT                 DVKFIEGEIDTKSIENCGISDRNDDFMTNILRLESIKVPDQHSYAPLIADH
FT                 ANSSSDSSEVEEEFLSASEPDDNSVSGQEVPPQENVVQRGRGRPKIIRSGQ
FT                 PGRPKKQYQAVLNSFLNQMDDTETPQSVAEALQGDHSQNWKESMQTEYDAL
FT                 QENNTWSLCELPPGQKAIGSKWVFRIKRNKDGIIEKFKSRLVAQGCGQQFG
FT                 VNYWETFSPVIRYETIRMLFAIAAEKQLYMHQVDISNAYLNSKLHETVYMR
FT                 QPQNFVDKHHPEKVLKLRKALYGLKQSGRVWNKTLDEVLSTMGFKRCKNEA
FT                 CLYVKKDEQTYSYIAVYVDDLIIACPNKNDIASNFKMHDGGPINFFLGMEI
FT                 ERDGEQGSISFCQKSHIQGLLDTYGMSKCRPVSTPLDPGYQVGCIDDNCVK
FT                 VNVTQYQSLIGSLMYLAVLSRPDILHAVSKLSQRNTDPHAEHETAAKHILR
FT                 YLAGTKNLGISYRKCGEPVRGFADADWANDRLDRRSYSGYAFFLAGSAFSW
FT                 TSTKQSVVALSSTEAEYIALSMAAKEAIYLRRLLDEIGWSTVTEPLTIYGD
FT                 NISSQHIAQNPVHHKRTKHIDIKYHFVREKVECNEIILEYVSTNGNVADLL
FT                 TKCLSKKKHDDFVKLLGMTKLNMR"
XX
SQ   Sequence 4104 BP; 1394 A; 771 C; 937 G; 1002 T; 0 other;
     ttggttatgg gcccagagtt cgttgtttcg gcttaataac agactaaaaa gcgtctgggt        60
     ttgagtgtcg gttgtgctaa attgtcaaca gttattttgt gcacacacgc ggaacaatta       120
     gcaacatgaa tttgtcaaat caaatcgaaa aacttgatga gggcaattac agtgtatggc       180
     atatggccat gaaaagtgtc ctggtaatga cagaattatg ggatgtagtc tgtggaaaag       240
     gcagtggagg agatgccgca gctgtcgaga aatggaataa attggatcag aaagcaatgg       300
     cgtacataac cttaaatgtt aaggcatcgc agtttgtgca cataaagacg tgcgaaacat       360
     cagaagccat atgaaaaaaa ttaaaggaac tgcacatgcc aaaaggcccc atccaaaagg       420
     tgcaacttta tcaaaaactt attcgactaa atatgcagca gggcgatgat gtgtccgcct       480
     atgtcaattc ttttgtagag acaattgaaa aattggcgga actggacata aaactccacg       540
     atgagctaaa agtcatcatg ttattgagca gtttgcccaa atcttgggaa aattttgtag       600
     tcgcgattga aacgcgtgac gagctgccaa aatttgaagc tcttaaagta aaaatgctgg       660
     aagaaggcac cagaaaacag gagaaggctg agcgcgaaaa tcattcggcc acacaagcag       720
     tatacacaca tacacagcgc agatcgcgag aaaacgagaa tgtcgagaat aacggaacca       780
     agaacgacgg gaacacaggc gtaaagcaac aattcaaggg aaaatgtttc aaatgcgaaa       840
     aaactggtca tcgagcaagc gagtgcagat ctaagaaaaa gggtagcaaa acaaatggac       900
     aaagagaaca ggcaagcagt ttaatgcact gttttgtcgg agagcagcaa aagagagttt       960
     ggtgcgtaga tagtggcgca acatcgcaca tgtgttgcga tcgcagcatg ttcctaaact      1020
     atgtcgagaa ggaaacatcg ataatgttgg ctacaaataa gttcgtctca tcacccggat      1080
     ctggtaatgt taaaattctg ggtgaaaata ttttaataaa cttgcaaaac gtgttatacg      1140
     tccccgaatt acacatgaat tttttctcag tgagcacagc agctaaattc gagaattcta      1200
     ctacatttat tggaaaagtg gcactgatta aaaataaaaa aggagaaaca ataataaaag      1260
     ccaagcaaga aaacaatttg tatgtgtaca aacagtgctc agaaaaaagt gcagtttata      1320
     tggtttaata ggtttggcca ccttaatttc caagatttaa aacagttgaa cgataaacag      1380
     cttgttcatg gcatgaactt tgaaaatgtg aaaatggaaa tcaattgtga tacatgtaac      1440
     agagcaaaaa tatgtgcatt gccgtttcaa cagaagttaa atcgtacaac ggagcaagta      1500
     cttgagctag tgcatacaga tgtatgtggc ccaatgaatg taaaatcgat cggcggcaat      1560
     cgctattttg tgacatttat tgatgactac tcgcgcaaga tatttgtata cattatgcac      1620
     gcaaaaagcc aagttttcga aaaattcaaa atgttcaaaa gttttgtgga atgccaaacg      1680
     ggcaacaaaa taaaggctgt gcgcagcgat aatggcacag agtatgtaaa taaggaattt      1740
     tctggttttt tgaacgagtg cggtatacaa aggcaactga cggttcccta cacccctcag      1800
     caaaacggtg tagccgagag agccaatcga acaattatag agatggcaaa aagtatgcta      1860
     atccatgcaa agctggagga gttcttgtgg gcagaggctg ttaccacggc agtttacttg      1920
     cgaaatagat gtcccacaaa agccttaagt ggcggtacac cattcgaagc ctggaaagga      1980
     cgcaagccat cagtaaaaca cctacgagta ttcggatctc gcgcatttgc tttgtataag      2040
     accagaagaa gcaaattcca ggcaaaaggc aaagaataca tttttgtcgg ctactccttt      2100
     acagcaaaag cttaccgcct gtacgatcga gagaaccgta caataattga aaggcgtgat      2160
     gtgaaattta tagaaggtga gattgacaca aaaagcattg agaattgtgg tatttcagat      2220
     cgaaatgacg atttcatgac aaatatactc cgccttgagt caattaaagt tcctgatcaa      2280
     cactcatatg cacctttaat tgctgatcat gcaaattcca gcagtgactc cagcgaagtg      2340
     gaggaggagt ttttgagcgc aagtgaacct gacgacaatt ccgtgagtgg tcaagaggtg      2400
     ccaccacaag agaatgtagt acagcgtggg cgtggcagac caaaaatcat ccgcagcggt      2460
     caacctgggc gaccgaaaaa gcagtaccag gcagtgctca atagtttcct aaatcagatg      2520
     gatgacactg agacaccgca gtcagttgct gaagcattgc aaggcgatca ttctcaaaat      2580
     tggaaagaat caatgcaaac ggaatacgac gctctacagg aaaataacac gtggtcattg      2640
     tgtgaactcc ctccaggaca aaaagccatt ggttccaaat gggtttttcg aattaagaga      2700
     aacaaggatg gtatcatcga gaagttcaaa tctcgattgg ttgctcaagg ctgtgggcaa      2760
     caatttggag taaattattg ggaaacgttt tcacctgtaa ttcggtacga gaccattcgc      2820
     atgttgttcg caattgctgc agaaaaacag ctgtatatgc atcaagtaga tatatcaaat      2880
     gcttacctga acagtaaact ccatgagact gtgtacatga ggcagcctca gaattttgtc      2940
     gacaagcatc atccagaaaa agttctaaag ctgcgtaaag cactttatgg actcaagcaa      3000
     tccgggcgag tttggaacaa aacgctcgac gaggtattgt ctaccatggg cttcaagaga      3060
     tgtaagaacg aggcatgctt gtacgtcaag aaagatgagc aaacatacag ctatattgca      3120
     gtctacgtcg acgatttaat tatcgcatgt ccaaacaaaa atgacatagc atcaaacttc      3180
     aagatgcacg atggcggccc cataaacttt ttcctaggaa tggaaattga gcgagacggt      3240
     gaacagggtt cgatttcgtt ttgccagaaa tcgcatattc aaggactatt ggacacgtat      3300
     ggcatgagca agtgccgtcc agtcagcaca ccgctcgacc cgggctatca agttggctgc      3360
     attgatgata attgtgtcaa ggtaaatgta acacaatatc agtcattaat tggttccctt      3420
     atgtatttag cagtcttgag ccgaccggac attttgcacg cagtaagcaa actgtcgcaa      3480
     cgaaatactg atccccatgc agaacacgag acggctgcaa aacacattct aaggtatctg      3540
     gctggtacga agaatttggg catctcatac cgcaagtgtg gtgaaccagt aagaggtttc      3600
     gctgatgctg actgggccaa tgacaggctc gatagaagat cttatagtgg atacgcattc      3660
     ttcctagcag gcagtgcttt ttcttggact tcaactaagc aaagtgttgt cgcgttgagc      3720
     agcactgaag ctgaatacat agcactatct atggctgcta aagaggctat ttatttacga      3780
     agacttctcg acgagattgg ttggtcaact gttacagagc ctttaaccat ctatggcgac      3840
     aacatcagtt cgcaacatat tgctcaaaat ccggtacatc acaaacgcac gaagcacatt      3900
     gatattaagt atcattttgt tcgcgaaaaa gtagaatgta atgaaattat actagaatac      3960
     gtatcgacaa acggcaatgt tgcagatcta ctaacaaaat gtttaagcaa gaaaaaacac      4020
     gacgactttg ttaaattact tggaatgaca aagttaaaca tgcggtagtt agtttaaaat      4080
     gataatatgt agcttaagaa gaag                                             4104
//
ID   Copia-29_DP-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   super_92;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-29_DP_;
KW   Copia-29_DP-I; Copia-29_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1492-1492 (2012).
XX
DR   Genome; super_92; Positions   76474   76268.
XX
SQ   Sequence 207 BP; 71 A; 41 C; 26 G; 69 T; 0 other;
     tgttaaaaat gtaatcgata ctattgtttg aataagcaac aattatctgg caacactgta        60
     ttgtatcgtg ctcataatgt atataccact ttactcactc tcaaataaac gtttaaccga       120
     accactacgt gtctcttgta tcagctccgt tttatatatc gcttatatat agaacggtaa       180
     actaaaacgg tacaattata tccaaca                                           207
//
ID   Copia-2B_DMel-I repbase;    DNA;    INV; 2916 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 25.03, Created)
DT   13-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2B_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2916
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 733-733 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 2916 BP; 1132 A; 402 C; 584 G; 796 T; 2 other;
     ggttatgggc ccagtcacat tttcgaccag gtggtgaaat attttaattg tgcaaataag        60
     aataattaaa ataaataaaa gtgaattttc ttatttaaat atatgtattt attgaataca       120
     aatacatatc ggctttgcga aatacataca tatgtatgtt acaacgatac acaaaaaagg       180
     tttggttgta tacacataag tgtaaaagca gtaaagcaac gaaaagtgat tctaagaagg       240
     gcaaggcaaa cggagaaaca aagaagaaaa taataagaac agttagtttt atcatcgcaa       300
     cgacgcgtgg tcataagtca aaaaaaaaaa aagacatgga taaaggaaag aggaatataa       360
     agccgtttaa cggtgaaaaa tattcaattt ggaagttccg agtaagggca ctgttagagg       420
     aaaacgattt gttaaatgta attgagaaag agcaaacaga agtaagcgag gaagtaaaac       480
     gggcagaaag aaattcaaag gggatcataa tagaatattt gagtgattct tttttaagtt       540
     ttgccaacag tggaaattcg gcaaagcaga tttttgaaaa attggatact atttatgagc       600
     gtaaaagctt ggcatctcaa ctgtcactam gcaagcaatt attctcttta aaactaaaag       660
     gtgatactct gctagcaaac cattttcatt tatttgatga tttgataact gagttagttg       720
     cggctggagc caagttggac gaaatggaca aaattgctca cctacttaat acactttcga       780
     ctaactatga aggagtaata acagctatag aaactcttac tgagagcaat ttgacattag       840
     actttgttaa gacacggcta ctcgatcatg aaataaagtt aaaaggaatt aacaaagaca       900
     caagtgctaa agtgctgcaa gctataggca atcgagagtc tagggaaaat acatacaaaa       960
     acaaagctat gaaatttatg aagaaacctt ttaagaataa gtccaaacta aaatgttttc      1020
     attgcaagaa attggggcat ataaagaaag attgctttct attaaaaagg caggcaggaa      1080
     accagaatgt tcccgatgga aataatgtta gagagggaca ggctcagatg gcgacagaaa      1140
     cacagccaga acgtgcgttt gcatttctga tgaatgcaga agttagagaa agacagactc      1200
     agaaggtaga aacgcagcaa aagtgcgcat ttgcatttat ggtgaaatta gtaaattaca      1260
     ctgaaaagcc agacgaagta aattttatat tagattcggg ggcatcagat cacctagtga      1320
     ataatattaa tttattttct gagtatgaaa atttaaattt aaacgtggct attgagattg      1380
     caaagcgtgg agaatttgtt tatgctactg caaaaggaca agttaaactt aacaattctg      1440
     gaagcaacat tacattacac aacgtgttgt attgtaagga aatcccgcac aatttgctat      1500
     ccgtaaagaa gatgatagat gctggaatgt ccgtcgagtt taataaggat ggaattaaag      1560
     taatcaagaa cggtaacttg gtatttgaag gagtatgtga gtataatgta ccgactgtaa      1620
     aatttacttt aaatagtaaa gtatatacat acatctgcaa tatcaaatga tgcagagtat      1680
     cgcttgtggc atgagaggtt gggacatata agtgttggaa aattcttaga aattaaacga      1740
     gatggcttgt ttgaagatag tgaacttata aaaaacgtac aagtaaatag tagtaaatta      1800
     tgtgaggcgt gtattaacgg aaagcaatca agactaaaat ttgaaaaaca caaaaataaa      1860
     gaaaatattg aacgcccact atttgtaatt cattcggatg tatgcggtcc gattacgccc      1920
     tcaactattg ataataaaaa cttctatgta gtatttattg atcaatatac acatcattgt      1980
     gtgacgtatt taataactta taaatcggac gtgttcttcg tatttaaaga ttttgtagca      2040
     aagagtgagg ctcatttcaa tttaaaaatg gttaatctat atatcgataa tggaagagaa      2100
     tatctctcwa atgaaatgcg tgaattttgt gtcgaaaaaa ggtatcagct atcatttaac      2160
     ggttcctcat accccacaac taaatggtgt tgcagagcgg atgatcagaa caatcactga      2220
     aaaagctcgc tctatgataa actgtactaa actaaataaa agtttttggg gtgaagctgt      2280
     tttgacagca acatatttaa taacaggtcc ccaagtagag ctttaaaaaa tataagaaaa      2340
     acaccatttg agatgtggca taaaaagaag ccagtattga aatatctaaa gatatttggc      2400
     tcgacagtat atgcactaaa taaagttcga aagcgaaaat ttgacgagaa atcgatcaaa      2460
     actatacttg tcggatatga gccaaatggc tataagttgt ggaatgagaa ctcgagaaaa      2520
     tttatgacag ctagagatgt agtggtggat gaaataaaca tgaaatcggt gacttcaaat      2580
     gaaaatgact ctgtggaaaa acatgatgtt tttgaccaat acagtgattc tctaattgaa      2640
     gagaatgaag agtcgaattt tccattgcag gaaaattgtg aatctacgga ttcgaagtct      2700
     gatgaaaatc caaatgaaaa ttccacttgt ctcgagaata ccgatccagt ggctgaaact      2760
     ggtgataaaa taaaagaaaa taaaaatcaa gaacaaatta gacgcagtga gagaattaaa      2820
     gataaaccaa agttaaaaaa ttgacaatcc tatgatgccg tctccatctc ctgatgcccc      2880
     tgccttaata aggatcacta atgtgataca aaattg                                2916
//
ID   Copia-2_AA-I repbase;    DNA;    INV; 2015 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_AA_;
KW   Copia-2_AA-LTR; Copia-2_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2015
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 939-939 (2011).
XX
DR   [2] (Consensus)
XX
CC   'CTGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           452..2002
FT                 /product="Copia-2_AA-I_1p"
FT                 /translation="MSDAKFSIPKLNGSNWQTWKVRVEMLLARDDLWYVID
FT                 EPVFEEEEDRTDEWKKDNRKAKATIILLLEDSQLPLVKNCVLARDVYDALK
FT                 RYHQKTTRSVRVSLLKKLCACDLAEDGDVEAHLRDFDDLFDRLDAAGTTLD
FT                 KDTKICMLLRSLPPSFDGLVTALDSRSDDDVSLDVVKSRLIDEYNRQLERK
FT                 GGESAKIEKALRSTEGKPDFESRVCHFCKNPGHIKRNCRKFLATLKKEVDS
FT                 SCTSCGECGKAKTAQGDSRSIAFAVGEGKSISWVIDSGACAHMCRDKSFFT
FT                 FLEEFAGDHVVLADGKNIPIQGEGSGVLYGIDGSGEVMKIEMNKVKYVPEL
FT                 SANLISVEQLAQKSYKVLFTGEGCDIVSAGGAVVATGHQHGGLYYLNTIKP
FT                 PTALDGRHQHRRQLNPRYRIETKRFPKEESTVKVKLESSSPSMNVSFQEEV
FT                 VWYDAIDEPEAHRIPSGVGDDSVNRKQFLPERFTTSQRPPGVMDRTLSLMK
FT                 FEGLRKLFRLDKSPPGNESSH"
XX
SQ   Sequence 2015 BP; 548 A; 411 C; 590 G; 466 T; 0 other;
     ggttttggcc ccagcaagcg acccagaaag gaagaaaatt tgtgtggaaa gattcggccg        60
     ggaagagccg aattggtcgt cgtgcgttaa tttttccgct gctgcgtcag ctcggaaggt       120
     gccgcgtcgt ggagtgaaaa ctatagcaac gagttgcgga caggtgttcc actccaggtg       180
     agggtgaaga aaattgtttt ccgagctagt gctcgaagaa agtgacgaag agtgtttgct       240
     tctccgggta gagagaaaag cgatttccga gcaagggacg ctcgataaaa gtgtgttccc       300
     cagtgcatct agccgtcgcc gctcgaggaa gggaagagaa agaagaagtg ccgagtggag       360
     ctggagcagg cgaacaacaa cgaagtggtt gcctaccggt tcggttagtg tgttgactga       420
     tcacccgagc agaaagtttt taccggtcag aatgagtgac gcaaagtttt cgattccgaa       480
     attaaatggt tccaattggc aaacatggaa agtgcgtgtg gagatgttat tggctcgtga       540
     cgatttgtgg tacgttatcg acgagccggt gttcgaagaa gaagaagatc gtaccgatga       600
     atggaagaaa gacaacagaa aggccaaagc gacgatcatc ttgcttctcg aagacagtca       660
     gttaccgttg gttaaaaatt gtgtcctcgc gcgtgatgtg tacgatgcgt tgaagcgata       720
     ccatcaaaag acgacacgat cggttcgagt gtcgctcttg aaaaagttgt gtgcctgtga       780
     tctcgcggaa gacggtgatg tggaagcaca tctacgtgat tttgacgacc ttttcgatcg       840
     tctcgatgcg gctggtacga ccttggataa ggacaccaaa atatgcatgt tgctccgaag       900
     tctcccgccg tcatttgacg gtctagttac cgcactggac agtcgctcag acgacgatgt       960
     ctcgctcgat gttgttaaat cgagattgat cgacgagtac aaccgacagc tggaaagaaa      1020
     aggaggtgaa tctgccaaaa ttgaaaaagc gttgcggtcc acggaaggca aaccggactt      1080
     cgaatcccgt gtctgccatt tctgcaaaaa tcccggccat atcaagcgga actgccggaa      1140
     gtttttggcc acgctgaaga aggaagtaga ctcttcgtgt accagttgcg gcgagtgtgg      1200
     caaagcgaaa acagcacagg gtgattcgcg gagtattgct tttgccgtcg gtgaaggaaa      1260
     atcgatttcc tgggtgatcg acagtggcgc atgtgcccat atgtgtaggg acaagtcttt      1320
     tttcacgttc ttggaggaat ttgctggtga tcacgtcgtt ttggcggatg ggaagaatat      1380
     tccgatccaa ggtgaaggaa gtggtgtact gtatggcata gatggttcag gtgaagtcat      1440
     gaagattgaa atgaacaaag tgaaatacgt gccagaactt tcagcaaacc ttatttccgt      1500
     cgaacagttg gcacagaaga gctacaaagt actattcacc ggtgaaggat gtgacattgt      1560
     gagcgctggt ggagcagttg ttgctacagg acaccaacat ggcgggttgt actatctgaa      1620
     cacgataaag ccgccgaccg ccttggatgg ccggcatcag caccgaaggc agttaaatcc      1680
     ccgttaccgg attgaaacta aacgttttcc gaaggaagaa tcaaccgtga aagtgaagtt      1740
     ggagagcagt tctccgtcga tgaatgtatc attccaggag gaagtcgtgt ggtacgacgc      1800
     aatcgatgaa ccggaggccc accggattcc atccggagta ggagatgatt cggttaacag      1860
     aaagcaattt ctaccagagc gtttcacgac aagccagaga ccgccgggcg ttatggacag      1920
     gacgctgagt ttaatgaagt tcgagggatt acgtaagctg ttcagacttg acaagagccc      1980
     accaggtaat gagtcttcgc attgaggggg agtgt                                 2015
//
ID   Copia-2_AA-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_AA_;
KW   Copia-2_AA-I; Copia-2_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-290
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 940-940 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 290 BP; 75 A; 78 C; 48 G; 89 T; 0 other;
     tgaagggtac aatgctcacc tcttagtaag tatgtacacc ttgttccttt tgacaaccct        60
     atcacacata caaccgtacg cgcacacacc tcgagccttg tgtttgcgcg ccaacaggga       120
     aatcattccg cattcgattg ttaccaagtg tagtactgta ctttttcact ctaatttttc       180
     cgatcattaa aaccacgttc tttagttagt aacttcgcgt gtgatttctc caccaaatat       240
     ccgaaactcc tttagggtat tccactgccg caagttggaa tctgccaaca                  290
//
ID   Copia-2_AnFu-I repbase;    DNA;    INV; 3907 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3907
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2882-2882 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..3887
FT                 /product="Copia-2_AnFu-I_1p"
FT                 /note="DUF4219, gag, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MNDKIEHKIVKLNATNYDNWSFKVKLLLIKDGCWEVI
FT                 SETKPEVVPAKWTTKDQLAMATIGLLVDDSQLTHIRKASSAKEAWDNLEKV
FT                 HVKRTLSTKVSLMRKICQLRLEPKGDMEAHIANLTDLVAKLNNLQENAVLD
FT                 EHWLVAILFGSLPEEYETLVTALEVRPDADLTMDLVTGKLIDEWLKRSNRP
FT                 EAKAETALHAVSKAGTDEKCYFCKRPGHKKANCWKWKKWKDNGQEAKSSKY
FT                 DHKVNSAVHDERFNWAFTTTDEISAGVWILDSGATCHITNNRDFLDNLDSS
FT                 VKEVICVADGGKVTSIGRGSGKFIAFDKNNKFHTITIDNVYLVPEMRANLL
FT                 SVRQLVAKGYEVNFNAEGATIGRNGAIGVIAQPVNNLFVLKLHECISYAVS
FT                 ECIHDWHRKLGHRDISALKNFMVPGMKVXPCKCSNECEVCIRGKMHRVPFP
FT                 KVSNSKTKEVMDLIHSDVCGPMRTETLGGKRYFLTFIDDFSKYTIVYVIHR
FT                 KSEVLDKFREYVEMVKNKFGRKPKVLRSDNGGEYTGENFKHFLKQNGIVGQ
FT                 FTAPYSPQQNGTAERKNRYLVEMARCMLFQAGLNDEYWGEAVATANYLQNR
FT                 LPSRSISATPYELWHGVKPNLSHIRPFGVDVYCHIPTEKRGKLDQKARKLK
FT                 LMGYSEDSKAYRLIDVLTSKITISRDVQFLQYNKEMQNNTSAKSDDKEVSI
FT                 PVFESATDEDPAEVSIDSITTDSNDQDDWEDAPVADEEMLRRSTRATQGKL
FT                 PMRYACLAETTFQEEPKTLAEALASPDSNNWKKAMHEELEAMKRNDTWELV
FT                 DIPKDKQVLGCKWVYTLKKTSNDKIYRYKARLVAQGFHQKYGIEYDEVFAP
FT                 VVRQTTFRALMSVAAKRKMIVRQYDIKTAFLNGDLEEELYMKQPPGFIVKN
FT                 EESKVCRLKRSIYGLKQSARSWNIKLHQVLEGDRFKRSEADQCLYRRQENG
FT                 KWCYVLIYVDDLIIASEDENNLSSISRTLKRNFEVVNLGEVKRYVGIEVEC
FT                 DGNGDYHISQSRYIEEILKSTGLQDAKISPIPIDVGYLKPTEKDKPLPNNY
FT                 EYQKLVGKLLYVACNTRPDIAASVSILSRKLVNPTQRDWNELRRIVRYLKG
FT                 SVDLKLRISNRLDKSGLVGYADADWAECTANRKSNSGFLFKFCGGTISWAC
FT                 RKQTCVSLSTAEAEFIALAEASQEAIWLQRLLSDLGEKVNVINLKEDNQSC
FT                 LKMLQVEKFSNRTKHIDTKYNFVKDLYRKGNVKYEYCPSEDMLADMLTKPI
FT                 ARIRIEYLRKLSGLENK"
XX
SQ   Sequence 3907 BP; 1328 A; 599 C; 945 G; 1034 T; 1 other;
     ggttatgggc ccaggcagag gttccaggaa tcaatattga ttaaaaggtc aaaatgaacg        60
     acaaaataga gcacaaaatt gtgaagctaa atgctaccaa ctacgataat tggagtttca       120
     aagtgaaact gctcctcata aaggatggtt gttgggaagt gatcagtgaa acaaagccag       180
     aggtggtgcc tgcaaaatgg acgaccaaag atcaactggc aatggccacg attggtttat       240
     tagttgacga ttcgcaactt acgcatataa gaaaagcatc ttcagcgaaa gaagcatggg       300
     acaatttgga aaaagttcat gtgaaacgta ctttaagtac aaaggtgtcg ctaatgcgta       360
     aaatttgtca gcttaggtta gaaccaaagg gtgatatgga agcacacatt gcaaatctga       420
     cggacttggt ggcaaagttg aacaatttgc aagaaaacgc tgtgcttgac gagcactggc       480
     tcgtcgccat tttgttcggt agtctacctg aagagtacga aacgctggtt acggcattgg       540
     aagtgagacc cgacgcggac ttaacaatgg atctggttac ggggaaacta atcgatgagt       600
     ggttaaagcg atcgaaccga ccagaagcga aagcagaaac tgctttgcat gccgtctcta       660
     aggcgggtac agatgaaaaa tgttattttt gcaagcgtcc aggacacaaa aaggcaaatt       720
     gttggaaatg gaaaaagtgg aaagacaatg gccaagaagc gaaaagcagt aaatacgatc       780
     acaaagtgaa tagtgctgtt catgatgaaa ggttcaattg ggcgttcaca actacagacg       840
     aaataagtgc tggtgtatgg atcttggatt ccggtgcaac gtgccatatt acgaacaata       900
     gagattttct cgataattta gacagcagtg taaaggaagt gatttgtgtt gctgatggtg       960
     gaaaagtaac gtcaattgga agaggatcgg gcaaatttat tgcatttgac aagaacaata      1020
     agtttcatac gataacaatt gataatgtgt acttagttcc agaaatgaga gcgaatttgc      1080
     tatcggtacg gcaattagta gcgaaaggat acgaagtgaa ctttaatgcg gaaggtgcaa      1140
     ctatcggtcg aaatggggcg attggtgtca ttgcacaacc cgttaataat ctttttgtat      1200
     taaagctgca tgagtgtata tcatatgctg tttccgagtg tatacatgat tggcatcgca      1260
     aactgggtca tagagacatt tctgcgttaa agaattttat ggttccggga atgaaagtca      1320
     maccatgtaa atgttcgaat gagtgtgaag tatgtatacg tggaaaaatg catcgcgtgc      1380
     catttccaaa ggtgtcgaac agcaagacaa aagaagtaat ggatctgatt cattcggatg      1440
     tgtgtggtcc aatgcgtact gagacgttag gtggaaaaag atatttctta acgtttatcg      1500
     acgatttttc gaagtatacg atcgtttatg ttattcatcg aaaatcggaa gtactggaca      1560
     agtttcgaga gtatgtcgaa atggtgaaga ataaatttgg aaggaagcca aaagtgttaa      1620
     gatccgataa tggaggagag tacactggag aaaatttcaa acattttctt aagcagaacg      1680
     gcattgttgg acaattcacc gcaccgtatt cgccacagca gaacgggaca gcagagcgaa      1740
     agaacagata tttggttgaa atggctcgct gtatgttgtt tcaggcagga ttaaatgatg      1800
     aatactgggg tgaagccgta gctactgcaa attatttgca aaatcgtctt ccttctcgtt      1860
     ctatatctgc aacaccatat gagctttggc atggagttaa gccgaatctt agtcatattc      1920
     gtccttttgg tgttgatgtt tattgccata tcccaaccga aaaacgtggt aagcttgatc      1980
     aaaaggcaag aaaactcaag cttatgggat acagtgaaga ttcaaaggcc taccgcttga      2040
     ttgacgtatt gacatcaaag ataacgatca gccgagatgt gcagtttttg cagtacaaca      2100
     aagagatgca aaataatacg agcgccaagt cggatgataa agaggtgtca attcctgtgt      2160
     tcgagtcagc aacagatgaa gatccagctg aggtttcaat cgattctatt acaacggatt      2220
     ctaatgatca agatgattgg gaagatgcac ctgtagctga tgaggaaatg ctgagaagat      2280
     caacgcgtgc aactcaaggt aaattgccga tgcgatatgc ttgtctggct gaaactacat      2340
     ttcaggagga gccgaaaact cttgcagaag cgctggcgag tcctgatagt aacaactgga      2400
     agaaggcaat gcatgaagag ctcgaggcaa tgaaaagaaa cgatacgtgg gaattagttg      2460
     atatcccgaa agataagcag gtattgggtt gtaaatgggt gtatacatta aagaagacat      2520
     ccaatgataa gatttatagg tacaaggctc gtcttgtggc tcagggattt catcaaaaat      2580
     atggtattga atatgatgaa gtatttgcac cagttgttcg tcaaacgact tttagggcac      2640
     ttatgtctgt agcagccaaa cgtaaaatga ttgtgcgaca atatgatata aaaacggcat      2700
     ttttaaacgg agaccttgag gaggagttgt atatgaagca accgccaggt tttatcgtaa      2760
     agaatgaaga aagcaaggtc tgtcgtttaa aacgtagcat ttacggtttg aaacagagtg      2820
     ctcgctcatg gaatatcaaa ttacatcaag ttttggaggg tgataggttc aaacggagcg      2880
     aagcggatca atgcttatat agaagacaag aaaatggcaa atggtgctat gtattaatct      2940
     atgttgatga tttaataata gccagtgaag atgaaaataa tttgtcgtca ataagcagga      3000
     ctctaaagag aaattttgag gtggtcaact taggagaagt taaaaggtat gttggcatag      3060
     aagtagaatg tgatggaaat ggagattatc atatttctca gagcagatat attgaggaaa      3120
     tattgaaatc aacaggatta caagatgcga aaatatcacc aattcctatc gatgtaggat      3180
     atttaaagcc aactgaaaaa gataaaccac ttccaaataa ttacgaatat cagaagcttg      3240
     ttggaaaatt attatatgtt gcatgtaata ctagacctga tattgcggca tcagtctcaa      3300
     ttttgagtcg taaactcgtc aatcctacgc aacgcgattg gaatgaatta cgaagaattg      3360
     ttcgttattt gaaaggttct gtagatctta aactgagaat aagcaatcgg ttggataaat      3420
     caggattagt aggatatgcg gatgcggatt gggctgaatg tacagcaaat cgtaagtcga      3480
     atagtggatt tctattcaag ttctgtggag gtacaatatc atgggcatgt cgtaaacaaa      3540
     catgtgtctc cttatctaca gcagaggctg aatttatagc attagcagaa gcttcacaag      3600
     aagcaatttg gcttcaacga ttgttaagtg atttaggaga gaaggttaat gttataaatc      3660
     ttaaagaaga taatcaatct tgtttgaaga tgttgcaagt agaaaaattt agcaacagaa      3720
     caaaacacat agacacaaag tacaactttg ttaaagatct ctacagaaaa ggaaatgtaa      3780
     agtatgaata ctgtccatca gaagatatgt tagcggatat gcttaccaaa ccaattgcgc      3840
     gtattcgcat tgagtatctt agaaagctaa gtggattgga aaataagtaa ctgatgttga      3900
     ggaggag                                                                3907
//
ID   Copia-2_AnFu-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-167
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2885-2885 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 167 BP; 62 A; 22 C; 36 G; 46 T; 1 other;
     tgtagatatt atattatggc aacatcagac gaaatgaccg gagtgatgga acactgtgac        60
     agtgckatct gtcagttgca tgaaatagaa tataatcaga aataaacgga actttcaagt       120
     gttaacaagt aaggaatact gtctggtgaa agagtttatt ctcaata                     167
//
ID   Copia-2_BM-I repbase;    DNA;    INV; 4040 BP.
XX
AC   nscaf3015;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; LTR-1_BM_;
KW   Copia-2_BM-LTR; Copia-2_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4040
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 585-585 (2010).
XX
DR   Genome; nscaf3015; Positions 2283287 2279248.
XX
CC   Positions [1450-1950] - Integrase core
CC   'AAAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           157..2196
FT                 /product="Copia-2_BM-I_1p"
FT                 /translation="MNNQMALIEKLSGRDNFATWRFAMQTYLQHEELWDCI
FT                 EDEVKDTKRDIKAKTKIILSVDPINYVHIQEAKTAKEVWHKLTSAFDDSGL
FT                 TRRVGLLRDLCNTSLAGCQNVEEYVSKIINTAYKLRNIGFKVDDEWLGTLL
FT                 LSGLPESYQPMIIAIESSGMKISSDSVKAKLLQDVRPPENDSKAFAVTKKF
FT                 HKNSKKQSKGPRCYTCNKYGHKSPECKNKTKDTQKASNSYAAVFVASTTQD
FT                 DAWYVDSGASSHMTKHRGLLSNENDTPSVKTIRTADNKILNVQCSGQVSLN
FT                 VCNKKGQENKLLFRNVLCVPELATNLISVSQIVRSGGQVRFNQNGCAIINR
FT                 GQIVATASIINNMYRLNMPGRGYACMSDVDAEDIYLWHQRMGHLNFNSLKK
FT                 MSDNVDHVIFSEKSENLSCITCKEGKQTRLPFKSECKRAQTPLQLVHSDIC
FT                 GPMETQTLGGSKYFITFLDDYSKKIYVYFLRNKSDALEKFKEFRNEVENQL
FT                 EARIKVLRTDNGLEYVNNNFSDYLKSCGIIHQTTTPYTPEQNGTAERMNRS
FT                 LIERAKCMLLNANLPKLYWADAVHTAAYIINRSPTKSLSFKTPEELWSGQK
FT                 PYVKHMRIFGCEAMVHLPQEKRRKWDPKAQKMIFIGYCDHTKGYRFIIPNS
FT                 RKVIKSRDATFLESTVKRDYVPIELSQKKHQ"
FT   CDS           2196..3974
FT                 /product="Copia-2_BM-I_2p"
FT                 /translation="MNIDDSKESETSEMTDDSTSTGSYDTVCDTKSSDSDY
FT                 LPDRSYDSLPISNITLRRKKKVQQSSDDPEENTYLCQDEVMLLDVPETYKE
FT                 AVNSIHKEKWMRSIDEELHAHQKNNTWTLVQRPANTKVINCKWVFRIKDEP
FT                 TGPRYKSRLCAKGYAQTKGIDYNETFAPTVRYDSIRILLSVAAQNNLKVIQ
FT                 LDVKTAFLYGELEEVIFMSPPEGLPCEENMVCKLNKSLYGLKQAPRCWNSK
FT                 FDTVLKKYGFVNTKADQCVYVGLVNNKKCYFCLYVDDGLLFSTDESALLEL
FT                 TKELSIIFEIKVLNKPSNFVGMQIEQFSNCIFIHQTKYIKQMLLNSYMDNS
FT                 NPNSIPVDPHVKLQKGNEEPNKSIPYRQAVGSLMHVAIVSRPDVMFAVSLV
FT                 SRYLNCYNQSHWNAVKRIFKYLKDTIDHGLCYVKTTEPSETTGYSDADYAN
FT                 DLDNRRSVTGYVFIKNGAAITWSSQRQQTVALSTTEAEFIAACAATKETMW
FT                 IKQFLSDISEYKQNSMTLHLDNQSAISVIKNINFHKRCKHIEVRYHFIKEK
FT                 YHQKIIALEFVGTDNQYADIFTKALCRDKFAFLRSKLGMCSYNSLV"
XX
SQ   Sequence 4040 BP; 1463 A; 697 C; 784 G; 1096 T; 0 other;
     ggttatgggc ccagtaaagc ctataaataa taaaagtgct aaataaactt taaaatcagt        60
     gatagacagt tttgcagtga acataacctc tcaataagaa gccggcatat tgtttttttt       120
     ttaactaaaa tccaccgaat atcattatca atcacaatga ataatcaaat ggcattaatt       180
     gaaaagctat caggccgtga taactttgca acttggcgat ttgcaatgca aacatacttg       240
     caacacgagg agctgtggga ttgtatagaa gatgaggtaa aagatacaaa acgagatatt       300
     aaagcaaaaa caaagattat tctctcagtg gatccgataa actatgttca catacaagag       360
     gcgaagactg cgaaggaagt ttggcacaaa ttaacatcag cattcgatga ctccgggcta       420
     acacgccgag ttggtctact gcgtgacctt tgtaatacat cacttgctgg atgccaaaat       480
     gtagaggaat acgtaagcaa aattattaac actgcctaca agctaagaaa cataggcttt       540
     aaagtagatg acgagtggct aggtacactg ctgctctccg gtctacccga atcttaccaa       600
     cctatgataa tagctattga gagttccggc atgaaaatca gttcagactc agtaaaggca       660
     aaactactac aagatgtaag accacctgaa aatgactcaa aagcatttgc agttaccaag       720
     aaatttcata agaattccaa aaagcaatca aaaggaccaa ggtgctacac ttgtaataaa       780
     tatggacata aaagtccaga atgtaaaaac aagactaaag atacacaaaa agcaagtaac       840
     tcatatgctg ctgtttttgt agcatctacg actcaagatg atgcctggta cgtggactca       900
     ggtgcatcct cacacatgac caaacataga ggtttgctgt caaatgagaa tgacacgcct       960
     tctgtaaaga caattagaac tgcagataac aaaattttaa atgtgcaatg ctcagggcaa      1020
     gtgagcttaa atgtatgtaa taagaagggt caagaaaata aattattatt cagaaatgtg      1080
     ttatgtgttc ccgaactagc aactaatttg atatcagtta gccagattgt cagaagcggt      1140
     ggccaagtaa ggtttaatca aaatggctgt gctattataa acagaggtca gatagtagca      1200
     acggccagta tcatcaacaa catgtaccgg ctaaatatgc ctggaagagg ctatgcatgc      1260
     atgtctgatg ttgacgcaga ggatatttac ctatggcacc aaagaatggg acacctgaat      1320
     tttaatagtc tgaaaaagat gtctgacaat gtagatcatg taattttctc tgaaaaatca      1380
     gaaaatctgt catgtatcac ctgcaaagaa ggtaagcaaa cgaggctgcc ttttaaaagt      1440
     gaatgcaaga gagcacaaac ccctcttcaa ttggttcact cagacatatg tggtcctatg      1500
     gaaacacaaa cactcggtgg atctaaatac ttcataacat tcctggatga ttattcaaag      1560
     aagatctatg tatattttct ccggaataag tcagatgctc tagaaaagtt taaagaattc      1620
     agaaatgaag tcgaaaatca acttgaagct cgtataaaag ttctccggac agacaatgga      1680
     ttggaatatg tcaataacaa tttttctgat tacttgaaga gttgtggaat tatacatcaa      1740
     acaaccacac catacactcc agagcaaaat gggactgcgg aacgaatgaa cagaagtctt      1800
     atagaaagag caaagtgtat gctcctgaat gccaatttac ctaaactata ttgggctgat      1860
     gcagtgcaca ctgctgctta tatcataaac cgttcaccaa caaagtcttt gtcatttaaa      1920
     acaccagaag agttatggtc tggacagaag ccatatgtga aacatatgcg tatatttggc      1980
     tgtgaagcta tggtacactt accacaggag aaacgcagaa agtgggaccc aaaagcacag      2040
     aagatgatct ttattggata ttgtgatcac accaaaggct atcgattcat aataccaaat      2100
     tccagaaaag tgataaaaag cagagacgct acattccttg aatcaactgt caaaagggac      2160
     tatgttccca tagaactatc tcaaaagaaa catcaatgaa tattgatgac agcaaagaaa      2220
     gtgaaacatc tgaaatgaca gatgattcta cttcaacagg ttcatatgat actgtatgtg      2280
     acactaaatc atcagacagc gactacctac ctgataggag ttatgatagt ctccctatct      2340
     ctaacataac tctacgccga aagaagaagg tgcaacagtc ttctgatgat ccagaagaga      2400
     atacatactt gtgtcaggat gaagttatgc ttttggacgt tcctgaaaca tataaagaag      2460
     ctgtgaactc aatccataaa gagaaatgga tgagatctat agacgaggaa ttacatgctc      2520
     atcagaaaaa taatacatgg acattggttc agagacctgc taataccaaa gttataaatt      2580
     gtaaatgggt attccgtata aaggatgaac caaccggacc aaggtataaa tcaaggctgt      2640
     gtgccaaagg atatgcacaa accaaaggca tagactacaa tgaaacattt gcaccaactg      2700
     tgaggtacga ttctatacgt atattattat ctgtagctgc tcagaataat cttaaagtta      2760
     ttcaacttga tgtgaagaca gcattcctgt atggagagct ggaggaggtc atattcatgt      2820
     caccaccaga aggcctacct tgtgaagaaa acatggtatg taaacttaat aaatccctct      2880
     atggtttgaa acaggctccg aggtgctgga acagcaaatt tgatactgtt ctgaagaagt      2940
     atggctttgt caacactaag gcagatcaat gtgtgtatgt tggtctagtt aataataaga      3000
     aatgttattt ttgcctatat gttgatgatg gattgttatt ctcaacagat gaatctgcat      3060
     tgcttgagct cactaaagaa ttgagcataa tttttgaaat aaaagtatta aataagccta      3120
     gtaattttgt gggtatgcaa atagagcaat ttagtaactg tatattcata catcagacta      3180
     aatatattaa acaaatgcta ttaaattctt atatggataa ctctaaccca aacagtattc      3240
     cagttgaccc tcatgtaaag ttgcaaaagg gtaatgaaga acctaataaa agtataccat      3300
     acagacaagc ggtcggctcc ctgatgcatg tggctatagt gagtcgtccc gatgtcatgt      3360
     ttgctgtcag tctggtgagt cgttatctaa attgttataa ccaaagtcac tggaacgcag      3420
     tgaagaggat tttcaaatat ttgaaagata caatagacca tggcctgtgt tatgttaaaa      3480
     ccacagaacc gtcagaaact acaggctaca gcgatgcaga ctatgcaaat gatctggata      3540
     accgtagatc agttactggc tatgttttta tcaagaatgg agcagctata acttggtcta      3600
     gtcaaagaca acagacagta gccctgtcta ctactgaagc agagttcatt gctgcttgtg      3660
     ctgctactaa agagacaatg tggattaaac agtttttaag tgacatcagt gaatataaac      3720
     aaaattcaat gactcttcat ttggacaatc aaagtgctat aagtgtcatt aaaaatataa      3780
     actttcacaa acgatgtaaa cacattgaag ttagatatca ttttattaaa gaaaagtatc      3840
     atcaaaagat aattgcatta gagtttgtag gtacagacaa tcagtatgca gatatattta      3900
     ccaaagcatt atgtagagat aaatttgctt tcttaagatc taaactggga atgtgttcat      3960
     ataattcatt ggtttaataa ttgtcttaat ataaaacaat agtatttact tttattgtta      4020
     aggcttaaat tgaggagaag                                                  4040
//
ID   Copia-2_BM-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   nscaf3015;
XX
DT   19-MAR-2010 (Rel. 15.04, Created)
DT   19-MAR-2010 (Rel. 15.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; LTR-1_BM_;
KW   Copia-2_BM-I; Copia-2_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(4), 586-586 (2010).
XX
DR   Genome; nscaf3015; Positions 2279247 2279058.
XX
SQ   Sequence 190 BP; 65 A; 29 C; 23 G; 73 T; 0 other;
     tgttgaaata attttaaatt tggcgccttg acactcaatg tgaatatgag atgatataat        60
     ataatctatg gcactacttt ttttctctac tccgtgacat ccaccgcatt gtattttcat       120
     ctacatttaa atattaaata aatacaaagt ataactgtgt ataacttagt gttatttata       180
     taatcgaaca                                                              190
//
ID   Copia-2_BrCo-I repbase;    DNA;    INV; 3994 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-3994
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1398-1398 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..3984
FT                 /product="Copia-2_BrCo-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MISASKYVIKKLNGDNYFNWRYKMKMILIEKSVWNVV
FT                 DETVDVPNPITPEWRKNDESAHSTIALNVEDDQIQYIRQCESARDAWKKLK
FT                 DIHEKDSANNRVSILRQIMNQRLEEGGDAEAHVIKLNELFQKMVALGEDIT
FT                 QDLIFSAILLGSLPESYDNLITALEARDEELTSSLVCSKVITEHKRRIERK
FT                 TENNGESILRISSTFKKGSSSCHFCKEPGHLRKNCTKYTEWLKKNKQKARN
FT                 KPDGEAKKPGAQGANMIKAESDEDDSREEFLFIIAVAIRGWILDSGATSHS
FT                 VSELNLFIEIDLTYRERVKVANGQLVEAIGIGTIQLELVNKSGVITKVKME
FT                 KVLYVPDLKGNFISVGKLTKNGYKVIFEGNYFEIILGKKAVAYGERCEDLY
FT                 KFKTPNRVYASEPVESEISNECIHEWHKILGHRDIGIVKSLQSGELVNGVT
FT                 FGVCGTDCSKILNCEVCLQGKMTKMKFPKKSENRTKGVIQMVHSDVCGAMQ
FT                 TATPSGKKYMVTFIDDFSKYTVVELIREKSETFGKFKEYVEMCKTMFNFKP
FT                 KFLRSDLGGEYIGTEFVNYLKSEGIQCNRSAPCTPQQNGVAERKNRTLIEM
FT                 ARCMLVESGMSKTFWGEAVVMANYIQNRLPARDIEKTPYELWFGIKPSIQH
FT                 FKKFGSKCYVFIPDEKRRKLDVKAKEAIMVGYDLLSKAYRCYVPTSGKVVI
FT                 SRDVKFVNKDSDWQMDKPPSESIVEADRVSVDDNNAGNIIEPLPNEPLPSK
FT                 NSVTMPRRSLRPNKGIAPNRLIVAAVTDEFEPSTYNDAVTCAEKSKWIDAM
FT                 KDEMNSMHQNKTWELVELPEGRKAIGSKWTYKVKKDACGKIQRYKARLVAQ
FT                 GFSQKFGTDYDEVFAPVAKQTTFKVLLAVAYAEEMKVRHYDVKTAFLYGEL
FT                 EETIYMKQPQGFVVEGKENQVCLLRRSIYGLKQAGRVWNQLIHKTLTDEGY
FT                 TQSKNDLCLYTLIDDEKLCYILIHVDDIIVASKFDREFEAFEKILGSKFET
FT                 NNLGNIQSYLGMDVQRNENGCFGVNQSTYIMKIVNNYGLGDAKPSDVPMSV
FT                 SYKRGNNTDDILISNEKYRQLIGSLLYVSVNTRPDIAASVGILAQKVEKPT
FT                 QEDWAELKRVVKYLKGTANLSLTIGNSAGGLVGYADADWGENSHDRKSIGG
FT                 YVFMFNGNTICWSSKKQTCVALSSTEAEFISLSEACKEAVWIRRLLQDFNQ
FT                 SINTATTMYEDNQSCLKLGQEESLSSRSKHIDIRKHFIKDHMDKGEIFCEY
FT                 CPTGDNLADMLTKPLPTRLLTKFREGCGLKLFK"
XX
SQ   Sequence 3994 BP; 1388 A; 690 C; 967 G; 949 T; 0 other;
     ggttatgggc catcacacaa aggaataatt cgtggattaa agagaatttg taaaggaaat        60
     ttccgttttt tcaaaatttt tcgagaagaa tcgaagaaaa tcatgatttc cgcatcgaag       120
     tacgtgatta agaagttgaa cggcgacaat tacttcaact ggcgatataa gatgaaaatg       180
     atactaatcg aaaagagtgt gtggaatgta gtcgatgaaa ccgtagacgt accgaatcca       240
     atcacccctg aatggcgaaa gaacgacgaa agtgcacatt ccacaattgc gttaaatgtc       300
     gaggatgatc aaattcaata tattcgtcag tgtgaatcgg cgagagatgc gtggaaaaag       360
     cttaaggaca ttcacgaaaa agacagcgcg aacaacagag tatctatttt gcggcaaatc       420
     atgaatcaaa gactcgaaga aggtggtgat gccgaggcac acgtcatcaa attgaatgaa       480
     ttgttccaga aaatggtggc gctgggagaa gacatcaccc aagacttaat attcagcgca       540
     attcttcttg ggtcgctgcc agaaagttac gacaatctca taacagcgct tgaagcacga       600
     gatgaagagt tgacatcgag tcttgtctgt tccaaggtaa tcacagagca taagcgtcga       660
     attgaacgaa aaacggaaaa caacggagaa tcaatattgc gaatatcttc aacattcaag       720
     aaaggttcat catcttgtca tttttgcaaa gaaccgggtc atttgcgaaa gaattgtacg       780
     aagtacactg agtggttgaa gaagaataag caaaaagcga gaaataagcc agacggtgaa       840
     gcaaagaaac caggtgctca aggggcgaac atgatcaaag ccgaaagtga cgaagatgac       900
     agtagagagg agttcttatt catcattgct gtagccatta gaggatggat attggactca       960
     ggagctacta gtcattcagt gtcggaactc aatttgttca tcgaaatcga tttgacttat      1020
     agagagagag tcaaagtcgc aaatggtcaa ctggttgagg caattggaat tggaaccatt      1080
     caattggaat tggtcaataa atctggtgtg atcacgaaag tgaaaatgga gaaggtgttg      1140
     tacgtcccag acctaaaggg gaatttcatt tcggttggga agttaacgaa aaatggatac      1200
     aaagtcatct ttgaaggcaa ttatttcgaa ataatcctcg gaaagaaagc cgttgcgtat      1260
     ggtgaaagat gcgaagacct gtacaaattc aaaactccaa atcgagtgta tgcatcagag      1320
     ccagtggaat cagagatttc aaacgaatgc atacatgaat ggcacaaaat actcggacac      1380
     agagacattg gtattgtcaa gtcgttgcaa tcgggtgaat tggtcaacgg agtaactttt      1440
     ggtgtatgtg ggactgactg ttcgaaaata ctaaactgcg aagtctgtct tcaagggaaa      1500
     atgaccaaaa tgaaatttcc gaagaagtca gaaaaccgaa caaagggcgt cattcaaatg      1560
     gtgcactccg atgtgtgtgg cgcaatgcaa acagcaaccc catcaggtaa aaagtatatg      1620
     gtaacattta tcgacgattt ttccaaatac acagtggttg agcttatacg tgaaaaatcc      1680
     gagacatttg gaaaattcaa ggaatacgtg gagatgtgca aaacgatgtt caacttcaag      1740
     ccgaaatttc taagatcaga tttaggagga gagtacattg gaaccgagtt tgtcaactac      1800
     ctgaaatctg agggtattca gtgtaatcga tcagcaccat gcacgccaca gcagaacgga      1860
     gtggcagaga ggaaaaatcg aacgttgatc gaaatggcac ggtgtatgtt ggtcgaatct      1920
     ggtatgtcca agacgttttg gggtgaggcc gttgtcatgg caaattatat acaaaatcgt      1980
     ctgccagcga gggacattga gaaaacacca tacgaattgt ggtttgggat caagcctagc      2040
     attcaacatt tcaagaaatt tggatcgaaa tgctacgtgt tcattcctga cgaaaaacga      2100
     agaaagcttg atgtgaaggc aaaagaagcc atcatggttg gatatgattt gctatccaaa      2160
     gcataccgat gctacgtacc gacatctggg aaagtagtaa tcagtcgaga cgtgaaattc      2220
     gttaacaagg acagtgactg gcaaatggat aaaccaccat cagagagtat tgttgaagcg      2280
     gacagagttt cggtggacga taacaacgct ggaaatatta tagagccatt accgaacgaa      2340
     ccgttaccat caaagaactc agttacaatg ccaagacgat cattgagacc taacaaagga      2400
     atagcaccga atcgtttgat agtggcggcg gtaactgacg aattcgaacc gtcaacatac      2460
     aatgatgcag tcacttgtgc tgagaaatcc aagtggatcg atgcaatgaa agacgaaatg      2520
     aattcaatgc atcaaaacaa gacttgggaa cttgtcgaat taccagaggg acgaaaggcg      2580
     attggcagta agtggacata caaagtaaag aaagatgctt gtggtaaaat ccaacgttat      2640
     aaagcaagat tggtggcgca aggtttttct caaaaattcg gaacggacta cgacgaagtg      2700
     tttgcgccgg tagctaagca gaccacattc aaagttctac ttgctgttgc atatgccgaa      2760
     gaaatgaagg tgagacatta tgacgttaag accgcatttc tgtatgggga attggaagaa      2820
     accatttaca tgaagcaacc gcaaggattc gttgttgaag gtaaagagaa tcaagtttgt      2880
     ctcttgagga ggagcatcta tggtttgaaa caagccggac gagtgtggaa tcagttgatt      2940
     cacaagacat taactgatga agggtacact caaagtaaaa acgatttatg tctttacacg      3000
     ctcatcgacg atgaaaaatt gtgctacatc ttgattcatg tggacgacat aattgtggcg      3060
     agcaaattcg atagagagtt cgaagcattt gagaaaattc ttggttcaaa attcgaaacc      3120
     aataatctcg gcaatattca aagctatctt ggtatggacg tacaaaggaa cgagaacgga      3180
     tgttttggag tgaatcaaag tacgtacatc atgaagatcg tcaacaatta tggactcgga      3240
     gatgcaaaac cgtcagatgt tccaatgagt gtctcataca aacgaggaaa caataccgac      3300
     gatattttga tcagcaacga aaaatatcgt caattaattg gaagtctgct atatgtttcc      3360
     gttaacactc gaccggacat agcggctagt gtgggaattc tggctcagaa agtagagaag      3420
     ccaacacaag aagattgggc ggagctgaaa cgagtcgtca aatacctaaa aggaaccgca      3480
     aatctttcgt taacaattgg caacagtgca ggaggtttgg ttggatacgc cgatgcagat      3540
     tggggagaaa acagtcacga tagaaagtca attggaggat atgtcttcat gttcaacggg      3600
     aacacgatat gttggagtag caagaaacaa acttgtgtcg cgctatcttc gacagaagca      3660
     gagttcattt cgttatcgga agcatgcaag gaagcggtat ggataagacg tttgctacaa      3720
     gacttcaatc aatcaatcaa tacagcaaca actatgtatg aagacaatca aagctgtttg      3780
     aaattggggc aagaggaaag tctgtcaagc cggtcgaaac atatcgatat cagaaaacat      3840
     ttcatcaagg atcatatgga caaaggagaa atattttgtg aatattgtcc taccggagac      3900
     aatttggccg acatgttaac aaaaccatta ccgacgcgac tgttgacaaa attcagagag      3960
     ggctgtggac taaaattatt taaatgagga ggag                                  3994
//
ID   Copia-2_BrCo-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1388-1388 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 58 A; 35 C; 18 G; 61 T; 0 other;
     tgttggagtt ggccatttaa atatcataat atcaagtaac cagtcaactt ctctaaaccg        60
     attcattctc catcaattta tcattgcgaa ttcacgttaa atataattgt tctttataaa       120
     acctggactt tccattaata tcctgaattt cactaaagcg ataactctaa ca               172
//
ID   Copia-2_BTa-I repbase;    DNA;    INV; 4362 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4362
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 574-574 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           269..4276
FT                 /product="Copia-2_BTa-I_1p"
FT                 /translation="MESESVIKAGYINISKLKGSANYQLWKFEAQIFLEAS
FT                 GLFGIVSGTETRPLTDAEKLQKWLKNDASAKKVIVTTIEKPLLTNILTCET
FT                 SAEMWATLKSVYGYNTNQEKSALFREFYAATYTKGDVMSYVAKLENLFAQL
FT                 RALDHTLKNELLINKILQSLPDSWRSFVTGFDFLPETNKTLDTLKNRIVLE
FT                 QNKTKTEKEEPVAFFGSEKRKCYRCNKVGHLKRQCRVKMPGKSDKTGEKSS
FT                 RGETSNARKRCSICKKDNHDEAACFFRNKNNSVKKNDNEDNAVSFLALQEE
FT                 QEDDVWIVDSGCTSHMTYMEEWLSSAEPWDQTVSSAKAGHNLKIVKKGTIV
FT                 AEECNLRNVLYSPEVCANLFSVNAVVKSGEQEFFEENEVIIKMAGKIVLRG
FT                 YRIEGGLFTVNLTIKKPKEGALSVINLKPDWHRRMGHLGGANLKVLEKIAD
FT                 GVELNKKGDIVRECKDCDVCLKSNLSKLPYNSARMKATEKLQILHSDLCGP
FT                 IEPKTFDGKSYFITLTDDFSGFTVTELLGNKSEASEELQNMIIRLEVQQKT
FT                 KSIKLRLDNGGEFTSGAFKKWCKDRGLELDYSIPYCPELNGTSERKNLTIM
FT                 TKARAMIQDSGVGKELWGEAVLAATYLMNRSPKRGMNETPFEKWWNKKPNL
FT                 ANIRIFGSDAYAKNTGYLKKLDDRGQKLVFVGYAPNGYRLYDSVEQKIIRA
FT                 RNVRIVERIEAGGILKREPDDASGEVIIEDSSVNDQEEAQGGADNQLNDSN
FT                 ADSWESSDVDSDSGDSDWNPPRSDFNSGDSNLEQREHPVRERRAPVRYPEP
FT                 ETVVLANEILDPEEPSSVAEALQSNEWRAAMQAEYQSLLDNKTWELTELPE
FT                 NATAIKCKWVFKIKRGPDGRPERYKARLVACGYSQRKNIDFFETYSPVIRI
FT                 GTLRYLFAIAMLKGLKIHHIDVDTAFLHGELEEKIYMQQPSGFEVEKGKVC
FT                 KLLKTLYGLKQASRGWNIKIKTVLLDFGLKQSQLENCIFFDVHEGSILIIA
FT                 LYVDDFFVIFNNMQKKEALMTRLRLEFKIKDLGRIKHALGIEFSWNDDESC
FT                 VALSQKQYALFLLKRFKMSECNPVKTPLEVSESKGKQGIEIEEEILENVPY
FT                 QNLIGSLMYMGVCTRPDISHAISYLSQFNNCPTVSAWKKAKRVLRYIKGTM
FT                 DKGIVYNSEDKNLIGYVDADWAGDKKDRRSYTGYVYSLSGGPIVWESRKQK
FT                 TIAQSTTEAEYMSLTESSKEAMFLRNLYQEIFGSVPNVKLCYDEKIKLFCD
FT                 NNGAIELASNPGFRARSKHIEIKHHFVREVLNKNIIELKHVNTEYMVADVL
FT                 TKGLAKEKHEFCVKNMLKNIPLKE"
XX
SQ   Sequence 4362 BP; 1523 A; 714 C; 1063 G; 1062 T; 0 other;
     ggttatgggc ccagctgacc caaaagtgaa agtgtatcga aatgttcgta tcgcgttaat        60
     gtggtgtaaa cgcggacagt aagaaataaa aaatttaaaa aataaaataa aatcgcgtgc       120
     tgcggaatgt ggtgtaaacg cggacagtaa gaaataaaaa tttaaaaata aaataaaatc       180
     gcgcgatgtg gaatgcggtg tgatcgcgga caataagaaa taaaaattta aaaataaaat       240
     aacataaaat aaaataataa aatttaaaat ggagtcggaa tccgtgataa aagcgggata       300
     catcaacatc tctaaactta aaggaagtgc gaactaccaa ctatggaagt ttgaagcgca       360
     aatatttttg gaagcaagtg gactgttcgg gattgttagt ggaacggaaa ccagaccact       420
     aacggatgct gaaaaacttc aaaagtggct taaaaatgat gcttcagcta agaaagtgat       480
     agtgaccaca atcgaaaaac cattgctgac aaatatttta acctgtgaaa cgtctgcgga       540
     gatgtgggca actctaaaaa gtgtgtacgg gtataacacc aatcaagaaa aaagtgcgtt       600
     attccgtgaa ttttatgcag ctacgtacac taaaggagat gttatgagct acgtggccaa       660
     attggagaat ctctttgcgc agttgagagc gctggatcat accctcaaga atgaactgct       720
     gataaataaa atactacagt cactgccgga ctcctggagg tccttcgtga ctggatttga       780
     ttttttgccg gaaaccaaca agacattaga cactcttaaa aatcgcattg ttctggagca       840
     aaataaaaca aaaaccgaga aggaggaacc tgtggctttc tttggaagcg aaaaaagaaa       900
     gtgctatcgg tgtaataaag tggggcatct gaaacgtcaa tgtcgagtca aaatgcctgg       960
     aaaatctgat aaaacaggtg aaaaatcatc tcgcggtgaa acttccaatg ccagaaagcg      1020
     gtgctccatt tgtaagaagg ataatcacga tgaagctgca tgcttcttta gaaataaaaa      1080
     taacagtgtc aagaagaatg ataatgaaga caatgccgtg tcgtttcttg ccctccaaga      1140
     agaacaggaa gatgacgtgt ggatcgtgga ctcaggctgt acaagtcaca tgacttacat      1200
     ggaagaatgg ttatcttcgg cggagccgtg ggaccaaacg gtgtccagtg caaaagcggg      1260
     gcacaactta aaaattgtga aaaaaggaac aatcgtggct gaagagtgta acctccgtaa      1320
     tgtactctac tcaccggaag tgtgcgcgaa cttattttcg gtaaacgcgg tagtgaaatc      1380
     cggcgagcaa gagtttttcg aagaaaacga agtaataata aaaatggcag gaaagatagt      1440
     tctacgtgga tatcgtattg aaggtggatt gttcacggta aatttgacca ttaaaaaacc      1500
     taaagaagga gcgctgtcag tgataaattt aaaacctgac tggcacaggc gaatgggtca      1560
     tcttggcggc gccaatctta aagtgcttga aaaaatcgcg gacggagttg aattaaataa      1620
     aaaaggcgat attgtgcgag agtgcaaaga ctgcgatgtc tgtttaaaat cgaatttgtc      1680
     gaaattgccc tataacagtg cgagaatgaa agcaaccgaa aaactccaga tattgcacag      1740
     cgacctgtgc ggacctatcg agccgaaaac ttttgatgga aaatcgtatt ttataacgtt      1800
     aacggacgat ttttcggggt tcactgtaac ggaattactc gggaacaaaa gtgaagcaag      1860
     tgaagagtta cagaatatga taataagact ggaggtgcag cagaagacca agagcataaa      1920
     actacgtttg gataacggag gagaattcac gagcggcgca ttcaaaaagt ggtgcaaaga      1980
     ccgaggattg gagctggact actctattcc gtattgcccg gaacttaacg gcacgtcgga      2040
     acgtaaaaat ttaacaatca tgacaaaagc gcgtgcgatg attcaggaca gtggtgttgg      2100
     aaaagaactc tggggtgaag cggttttagc ggctacatac ttgatgaacc gttcaccgaa      2160
     aaggggaatg aacgagacgc cattcgaaaa atggtggaat aaaaagccaa acttggcgaa      2220
     cataagaatt ttcgggagtg acgcgtacgc gaagaatacc ggctacttga agaaacttga      2280
     cgatcgtggc caaaagctag tgtttgtggg atacgcaccg aatggatatc ggttgtacga      2340
     ctcggtcgag cagaaaataa tacgtgcgcg taacgttcgc atagtcgaaa gaatcgaggc      2400
     gggcggaatt ttgaaacgcg aacccgatga cgcgagtggt gaagtaataa tcgaggacag      2460
     tagtgtcaac gaccaggaag aagcgcaagg gggcgcggat aatcagctga acgattcgaa      2520
     tgcagattcg tgggagtcat ctgacgtaga tagtgacagc ggtgactcgg actggaatcc      2580
     accaaggtca gactttaact ctggtgactc aaatttggag caaagggagc atcccgtgcg      2640
     tgagcgacgc gcacccgtgc gatatccgga acctgagacc gtggtccttg ccaacgagat      2700
     actcgaccca gaggagccaa gcagtgttgc ggaggctcta caatcaaatg aatggcgggc      2760
     tgccatgcaa gctgagtacc aatccctgtt agataataaa acctgggaat tgactgaatt      2820
     acccgagaac gcaacagcca taaaatgtaa atgggtattt aaaataaaaa ggggaccaga      2880
     cggtagacca gaaagataca aagcgagact ggttgcctgt ggatacagtc aacgaaaaaa      2940
     tattgacttt tttgaaactt actcaccagt gataagaatt gggactttgc gttacttgtt      3000
     tgcgattgca atgctaaagg gattaaaaat acaccatatc gatgtagata cggcgttttt      3060
     gcatggagaa cttgaagaga aaatatacat gcaacaaccg tcaggttttg aggttgaaaa      3120
     aggaaaagtt tgtaaattgt taaaaacgct gtacggctta aaacaggcgt caaggggttg      3180
     gaacataaaa attaaaacag ttttgcttga ttttggtctc aaacaatcac aactggaaaa      3240
     ttgtattttc tttgatgttc atgaaggatc gattctgata attgctctat atgtcgatga      3300
     tttctttgta atttttaata atatgcagaa aaaggaagca ttaatgacta gattaagact      3360
     agaatttaag attaaagact tgggtagaat taaacatgca ttgggaatag aattttcttg      3420
     gaatgacgat gagagttgtg tagcattgtc acaaaaacaa tatgcgttgt ttttactcaa      3480
     aagatttaag atgtcagaat gtaaccctgt gaaaactccc ctagaagtga gtgagtccaa      3540
     aggaaaacag gggattgaaa tagaagaaga aattttggag aatgtgccct accagaattt      3600
     aatcggaagc ttaatgtaca tgggagtttg tactcgtcct gatatctcac atgcaataag      3660
     ttacttgagt caatttaata attgtccaac agtttcagct tggaagaagg ctaagagagt      3720
     attgagatac ataaagggga caatggataa aggaattgtt tacaattccg aagataaaaa      3780
     tctcataggt tacgtagatg cagactgggc aggagacaaa aaggacagac gctcttatac      3840
     agggtatgtt tacagtctga gtgggggtcc tatagtttgg gagagccgta agcagaaaac      3900
     aatagcccaa tccacaactg aagccgaata tatgagctta actgagtcaa gtaaagaagc      3960
     tatgtttttg cgtaatctgt atcaggaaat atttggatca gttccgaacg ttaaattgtg      4020
     ctatgatgaa aagattaagt tattttgcga caataatggc gctattgagt tggcatcgaa      4080
     tcctgggttc agggcgaggt caaaacacat cgaaatcaag catcattttg tccgtgaggt      4140
     gctcaataag aatattatag aactaaagca cgtaaataca gagtacatgg ttgccgatgt      4200
     gctaacaaaa ggattagcaa aagagaagca tgaattttgc gtaaagaaca tgttgaaaaa      4260
     tattcctctc aaagaatgaa ggtctataat gaattaagaa taaaattgat tattggatat      4320
     tgtgttagat ttaagcacct ttttattatt tttaaggggg cg                         4362
//
ID   Copia-2_BTa-LTR repbase;    DNA;    INV; 383 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-383
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 599-599 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 383 BP; 132 A; 68 C; 74 G; 109 T; 0 other;
     tgttgtttag agtaaaaata acaaaaagga taattgataa tttgcaacca tgtgaagaga        60
     aggtgaaact ccctgggatt gtgctctggc tgaaaaatac ctacacaagt gagataaaac       120
     aacattgaat taataagatg aagaaagaaa gcagtatgaa ataaaacacc ctttatcagt       180
     gaggaaaggt atttttcagc tggagacaca aaaccgggag cttcaccttc tcgatgagtg       240
     gattcagact cacgtccagc catgttagtt cttagttcat cagtctctct cgaatgagca       300
     ccatgtcggt tttttccgca ataaaatctc attcattttc acgcaattaa ttttggttga       360
     cgttattttc gtcaaaaacg aca                                               383
//
ID   Copia-2_Cfl-I repbase;    DNA;    INV; 4260 BP.
XX
AC   AEAB01006442;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_Cfl_;
KW   Copia-2_Cfl-LTR; Copia-2_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-4260
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01006442; Positions    4700     441.
XX
CC   Positions [1514-2041] - Integrase core
CC   'ATATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..2179
FT                 /product="Copia-2_Cfl-I_2p"
FT                 /translation="MAQVARFESLNKENYDTWKMFMEALLVKNDLWQYVSG
FT                 TSVKPEVIAGNAASENMARTWEQNDAKARSDIVLSISSTELKQIKGCVTAR
FT                 EVWLKLKDTYQSKGPARKAALLRQLTTLKMSGNSDVRAHLNQFFDIVDKIN
FT                 EIGVEIDADLLSTLLLLSLSNEFENFRCAIEARDMLPTLETLRIKITEEAD
FT                 ARKGIADSHLSNAMYAKKQYKKQQKRSKDVNENSSDSTFKYKCHKCKIVGH
FT                 KASDCKAQKKDSQTAQNATDTTMLTPEAFLAGTTETSKWCLDSEATSHFCY
FT                 ETCKFGVNMNAKREKLNLANKNSTQITGEGTARLNTNIHGELRSIHLENTQ
FT                 LVPDLRMNLLSVAKITDHGYDVLFNKHRELVVDQDGNVKLIANKTNGLYIV
FT                 EESVNEIAVAEEISTGSTTQLKADWHRRFGHLNVKDLQAAIRKGRVEGIEP
FT                 GNFINSNCDICPEGKMARNPFPIKSERSTKILDLVHTDICGPMKVTSIGGA
FT                 KYILQFIDDSSRWGQVYFLKSKSDVFQALQNFVITMENQTGRKIKIIQSDN
FT                 GKKFVNATIDEFLKQRGIIRRLTVPYCPQQNGVAERRNRTLVEMARCLLLQ
FT                 SGLPPSFWAEAVNTANYIRNRCPSKLLDGRTPFEVLSEKIPDVSHFREFGQ
FT                 RVFVLCNKPGIGKLDSRGVTGIFVGYSDSSKGYRI"
XX
SQ   Sequence 4260 BP; 1425 A; 936 C; 975 G; 924 T; 0 other;
     ataggttatg ggcccagatc ttaccgccgt aaagcagtca tagttcgtgt cgttcttttt        60
     tacgcgacgt cattacgagt gaaataaata atcgtgaaaa acgtcgcaat acgatcggaa       120
     agcagaaatg gctcaagtgg ctagattcga gtccctgaac aaggaaaact acgatacgtg       180
     gaaaatgttc atggaagcat tgcttgtgaa aaacgatttg tggcaatacg taagcggaac       240
     gagcgtaaaa cccgaagtga tagccggtaa cgcggcctca gaaaacatgg cacgaacgtg       300
     ggaacaaaac gacgcgaagg cacgatcgga cattgtattg tcaattagct caaccgagct       360
     gaagcaaatc aaaggatgtg tcacagcacg tgaagtgtgg ctgaagctga aagatacgta       420
     tcagtcgaag ggaccggccc gaaaagcagc tctccttaga cagttaacta cgctaaaaat       480
     gtcaggtaac agcgatgttc gcgctcatct taatcagttt ttcgacattg tagataaaat       540
     taacgaaata ggagtcgaaa tcgacgcaga tctactctcg acgctactgc tgctgagttt       600
     gtcaaatgaa ttcgaaaact ttcgctgcgc gatcgaggca cgagacatgt tgccaaccct       660
     cgagacactc cgtataaaga tcacggagga agctgatgca agaaaaggca ttgccgatag       720
     ccatttatca aacgcaatgt acgcgaagaa gcaatacaag aaacagcaga agaggtccaa       780
     ggacgtaaat gaaaactcta gcgacagcac atttaagtat aagtgtcata aatgcaagat       840
     agtcgggcat aaagcgtccg attgtaaagc tcaaaagaaa gattcacaaa ccgcacagaa       900
     cgcaactgac acaacaatgc tcacacccga agcctttttg gccggaacga cggagacgag       960
     taaatggtgc ttggacagcg aagcaacatc gcatttttgt tacgagacat gtaaatttgg      1020
     cgtgaacatg aacgctaaac gtgagaaact gaatctcgca aacaaaaact cgacccagat      1080
     cacaggagaa ggaacagctc gactgaatac taatattcat ggagaattga gatcaattca      1140
     tctcgaaaat acgcagctag ttccagatct acggatgaat cttctctcag tcgctaaaat      1200
     caccgaccat ggatacgacg tcctgttcaa caaacataga gagctcgtag tggatcaaga      1260
     cggtaacgta aagttgatcg caaataagac aaatggtctg tacattgtcg aagaatcagt      1320
     caacgagatt gccgtcgcgg aagaaattag caccggaagc acaactcagt taaaagcaga      1380
     ctggcaccgc agattcggtc acttaaatgt aaaggatctt caagcagcca tacgcaaggg      1440
     tcgagtagag ggaatagaac caggaaactt catcaacagt aactgcgata tttgtccgga      1500
     aggaaagatg gcaaggaatc cttttccgat aaaatccgag agatctacaa aaatactaga      1560
     tcttgtgcac actgacatat gcggtccaat gaaggtcact tccattggtg gagctaagta      1620
     tattttgcaa tttattgacg atagctctag atggggacag gtctactttt taaaatccaa      1680
     atctgatgtt tttcaggcgc tgcagaactt cgttattacg atggaaaatc aaactggtag      1740
     aaagataaaa atcatccaat ccgacaatgg aaaaaaattt gtgaacgcca ctattgacga      1800
     gttcctgaaa cagcgcggaa tcatcagaag attaaccgta ccatactgcc ctcaacagaa      1860
     cggtgtggcc gagaggagaa atcgtactct ggtagaaatg gctaggtgtc tcttgctgca      1920
     gtccggccta cctccatcct tttgggcaga agctgtaaat accgcaaact atatacgcaa      1980
     tcgatgccca tcgaaattgt tagacggaag aactccattt gaagtgctgt cagagaaaat      2040
     tccagacgtc agtcatttca gggaattcgg acaacgggta ttcgtcctgt gtaacaaacc      2100
     tggcatcgga aaactggact cacgcggagt cactggaatc ttcgtcgggt actcagactc      2160
     ttcaaaaggc tacagaatat gaatcccaga taaaatgaaa atcattgtgt caagagacgt      2220
     aaagttcttg cataccgaat ctcccaagga aaacacatac gaagatttct accccggatc      2280
     agttgaaaac agcgaagaag tcgatataaa taaaagtcac gatcacgaca tgatcgacgt      2340
     aatattggag ccatccgaga actgtcaaaa cgaaaccgtc gaagagaata tagccgaggt      2400
     acctgcagaa cgcatcgaac cagtcaatgg agatgcagta gaagaacccc aagagaatca      2460
     cgatgatcta cctcacgacg cacaggaagt gatacgtcga gcaccaggca gacctaaaat      2520
     tgtgaggact ggagaaaggg gaagaccttg taaagaattc cattatcatc atgccgaaat      2580
     ttcagaaaca caatcagcac atctgtcaga aattccaatg agagaagcga tgtctggttt      2640
     agaagccgac gaatggcgac tagcgatggt caaagaaata agatcgatca tcaaaaacga      2700
     tacttggaaa ttagttgatc gagtcgacga tcgactaacc atcgaaccat catcggtacc      2760
     cggatggtac tcaaaaacaa gctcagtccc gacggatcca ttcagcaacg aaaggctcga      2820
     ttagtagccc aaggatttgc acagaaacca ggcgtacact tcaacgaaac attcgctccg      2880
     gtagcacgga tgggatcgat tagactgatg atcagctcag ctgcacgctt ttgcatgaac      2940
     attcatcagt tagatgtcac cacggctttc ctcaacggat atctggaaga agacattcta      3000
     gtgaacccac cgaaagaact tatcgaactt ctacaaatcc tcgcagactc ggacaaggac      3060
     gatgtcatcc gaaagaaggc aaaccaaatg ctccatgaat taaacactgg caataaagtc      3120
     tgtaagttaa aaaaagcgtt atacggacta cgacaagccg gacgaagctg gtatcaaagg      3180
     ctcgacaaag tcttaaagga gtgcggagca aacgctacaa atgccgaccc atgtctgtat      3240
     cacttgggac aaggagagaa catcgtactg atagctgtat acgttgatga tatactcatt      3300
     gcatcacgta acaagaaaga aattgatcgg atctcttatt ttctttcgca acaattcaag      3360
     ataaagaacc ttggagaagt caatcggtgt cttggaattg aattcaaccg cgaaggagaa      3420
     aagattactc taactcaaaa aggctatatc tgcgaactgc tcaggcgctt cggaatgact      3480
     gactgcaacc cagtcagcac tccgttcgac tcgaatgtaa agctaaaaaa gggagcagaa      3540
     cctacaccag acgatcaagt tttgccctac cgtgaactcg tagggagtct cacgtatctt      3600
     gcatcttcta ctaggcagac atagccttct cggcaagcta tctcgggcaa ttcaacaatt      3660
     gcttcgacga aacacactgg aaggccgcta aaagagtttt aagatatctg aagggaacca      3720
     tgggagcagg actcgtctac gggccagact caaatccact catcggttat acagactcgg      3780
     attggggaaa ctatcacgtg gaccgacgtt cacattccgg attcctgttc gtactgagcg      3840
     gatgccctat cacttgggat gcgaagaacc aaaaactgtg gcactgtcat cgtgtgaagc      3900
     tgagtacatg gcactcaccg aatgtaccaa agaagccata ttcttgcagc gtttcctgaa      3960
     ggaattaggg ttcagcgatc taagtaacgt cacaatcttc ggagataatc tgggcgcgat      4020
     caaactagcg gaaaatcccg ttttttacca gcgaagcaag catatcgacg tcaagtacca      4080
     ctatgttcga gacgcacttc gcaacgaaaa tctaaacatc aagcatgtct caaccataga      4140
     tatggtggca gacatactta cgaagggatt accgaaaaga aaacatttgg agtgcctcaa      4200
     gaaagctgga atgcatctat cacactgcga gtagatcttc gagcgcgaat cgagggggag      4260
//
ID   Copia-2_Cfl-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   AEAB01006442;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_Cfl_;
KW   Copia-2_Cfl-I; Copia-2_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01006442; Positions     440     183.
XX
SQ   Sequence 258 BP; 44 A; 67 C; 53 G; 94 T; 0 other;
     tgttggaact cgcttgaatt cgagtggact aagttccgac tcgcactcgt ggagcggcgc        60
     tacattctgc agtcaatcac tgctatctac ttccttttta ctcttctctg tgtgctctcg       120
     atttcgcggc gtgtcgccga tatacttgag ctgtcttttt tgcagtaaag tcgtattaaa       180
     tccttattgt gcataaatcc tgttgttctt ttctggctct tcctttgcgc tacgaaaggc       240
     tctgcctcct gtacctca                                                     258
//
ID   Copia-2_CoFl-I repbase;    DNA;    INV; 6704 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6704
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2265-2265 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1257..6521
FT                 /product="Copia-2_CoFl-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MSDEKKSEMSEVRNLDEINVDSENLWQKLGGNESVHE
FT                 AAPSSPSRTPENTQLKIKKVQTIENKYKWLNVSKTKLHMADKQKNENFSEN
FT                 IMLARFDSIMAAISQMIERQEKANEEARKAEEERARKAEEERQEAERTREE
FT                 IILVMRNFDQRLSRLGERVNRVESSEAQSSTGAPLQSSTPRNDRRRVSLQD
FT                 KLKTFLNDTKNENLSKGSAELLATTISQIHKFGRDTQHIYNYHLSKDMKFE
FT                 VFLDKFKSELRSKGLLYVIDSSIKNTEFINEDMIKEDKLKVRDILLSRVTE
FT                 KYHLRTFRLQDPVVILESLKELKKGETPLTTAAIRKKLHEIKFYKGKESVA
FT                 KFIEKFEELVRNYETISTSGPFSEEEKRDAFYTAVIGAVPSVQVTDFTLKM
FT                 QSRDGKGMTYENLMSYMLKVESEGLAEATGGRPTRAALTASWPQDRLRCFN
FT                 CDDWDHMADKCPKAGTGLKKCYTCGTFVYDIPAHKRCSPRCGEQNKSDSWD
FT                 FKRQGRGSRGNRGGRGGGRGSGRGRSNSRNFGQKRDSSNVRDEKDPKRQKV
FT                 SDQGRETKGKRDVSGSNKGESLTLIEPPNTLFSNSAGWVNNSESDGENKIK
FT                 FVADSGATDHFAKSEKLFTNIDRNKIGKIKCANSDSSADLKTEGVGNLLLK
FT                 NCNNDVELQGVVCARDLIGNLLSLRKFADMGLSIYLDDKEISIFDPNTENV
FT                 WISGIYEKPYWMVEFVKSDNKRMKVLTAESKAHTIPENSTTDIKLNNKSEN
FT                 SESSVGKLNNDSFEDVFLINDRKFHEVGKVLTEEIKDIQSPFSENYKKFKD
FT                 NNGAMLWHVRLGHASLGYLRELQKNYPEVKSLKEAVFDDVIKTCDVCLRTK
FT                 SQKLPFPSVRERASQPLQIIHSDTMGIINPPSYPKRYRFISVFIDDYSKFA
FT                 IAYPMKNKSDTGECLDNFVKGCRNLLGFEAKVCYLRSDQGTEYTGGSVRKI
FT                 LNDLGAELQLSCPDTPEHNGTSERLNKTIQMKVRALICDSGLPENMWDLAL
FT                 NAAVFAYNRTPHRSNNMEIPLMKLAPNKRTDLSQMKRFGCIAYLRVQRNTE
FT                 TKFHAKGKRAVMVGYTPTGYRLLCPDEGKFYESRDVRFNERFVYGDVFGKN
FT                 SIKNWENVTVNIKLDEWFLKFEKEREETVSSEEAPPVVQRKRGRPKRLIET
FT                 MEANLVQESRVKDVSFAGLALGEELTKDLIFKNGDTETSGNNAIYAEDLVY
FT                 HSLLAEINKDPASYKEAMKAVDKEGWNQAIQEELDSMAKNQVWKLVNRPAG
FT                 LVNGKRPNIIDSRWVLKKKVDAQGCEKHKARLVIRGFKDKNEYDLTETYAP
FT                 VSRLTLIRTALAVINKLNLDTCQLDVKTAFLNGNLDDEIYMELPEGLVCSD
FT                 LEKQSKVCKLQRALYGLKVSPKKWHERFSEAATKIGLRSHILEPCLFTWHE
FT                 ADKILILVLYVDDMLIASNDSGKLKSVKERLQSEFEMTDLGEVKSFLGIEV
FT                 RRDRENQVLTLTQTNYINKILKKFGFDDSKPVKTPMVTGHVLNQQRKQREQ
FT                 SERQIDLNESRSTESVPYREAVGSLLYAANTVRPDISYAVNVLSRHQISPT
FT                 NEDWNMVKRVFRYLAGTKSYGLRYCGRQQGLEAFSDASFGDCKGSLTTSGY
FT                 VIKIFGDSVAWRTHKQTYVSLSTCQAEYVSLSEACRELMAVDNSIKIILNN
FT                 TLCPADLWCDNKAAEQNAKIIGSGKLRHMTEIHEHYVKECVNYGRVNVRWL
FT                 NTKEQMADIFTKPLPIELHEKFASRIANSFCDSDW"
XX
SQ   Sequence 6704 BP; 2164 A; 1204 C; 1662 G; 1674 T; 0 other;
     ggttacgggc cccagactcg catcaccgcg cgtgatctct tctttatttt ttttgtgtgg        60
     gtgagtgtga caaaagagag gatggcggaa agggctgaga cagcaaagga tggacaagag       120
     agtccgatcg aggaagcggc cgagagcgtg acccctggtg accaggccga gtccgttgtc       180
     gaccaggcgt tgtcgacgcc ggtcgaggaa aggggagcaa atctggacgc cggaaccgag       240
     atcagcggta ggtcaacact ttgttttttt gagtgatgcc taggttggac gctacgacgt       300
     caggtaaaaa ggggttttct tgtgcattct gagaaatgcg cgggattcca agaaacacgt       360
     ggcgtcggta gcgcgacacg cacatgcaag agcggggcgg atcgagaggg ggacaacata       420
     ttgcggctga ggagagagtt cggtctctct ctctccctct cgtgatgacg cgaggctttt       480
     tgactgaaaa tatattacga ggccgtttgt gttttgtttt cgtgctttct cgcgtctctt       540
     gttcttgtcg cctcgactgt tgtgtgcgcg ttactatata aatgtccgaa ctgggaaagt       600
     ttgaacgtgt gtcggcagaa aattatatat gtcctttccc ggtgctttta attaattgaa       660
     ctctaggcaa taaatattca aggcggtttt cagatttagt cagaaaaggc tgatatttta       720
     aaagtttaca ttttctttta gacgagcaaa ctatcgatgc tctgtcgaga atatgtcggg       780
     gaatttcatc ccaagtcaag tcagaaggac gacaacaagc tgctatcttg ttggtggata       840
     aaaggggaat aatggcatgt gtcgggcaaa gggatattcc cgccaaaggt gtgtaaacga       900
     aattattttc cgtgtgactc gcacagtcac gttagacttg tgttcggtcg cgcgcggctg       960
     tgtgagtgcc cagcgtgcaa tcgtgctttg tgttcgagca cgagaacacg cttcgggcca      1020
     cgttgactag attcggcttg cgttcggtcg atttctagtt gactccctga aaacaatgtc      1080
     cgtcttttgt tttagattac ctgatcggtg acgattacaa atacatcgtt aaatttctat      1140
     gtaaaaaggg aggcaaagtg acgttgccag aaaatctatt cagggaagac ggggaatgcg      1200
     aggaacctgc tcgtgataaa cccgggttat ttgaaaagtc ggtcgatgtg tttaaaatgt      1260
     cagatgagaa aaagtccgaa atgtcagaag tccgaaacct tgatgagata aatgtagaca      1320
     gtgaaaatct ttggcagaaa ttaggcggaa atgagtctgt acacgaagca gccccctctt      1380
     ccccgtcgcg cacaccggaa aatacccaac ttaaaataaa gaaagtgcaa accattgaaa      1440
     acaaatataa atggttaaac gtcagcaaaa cgaagttgca tatggcagat aaacagaaaa      1500
     atgaaaattt ttcagaaaac atcatgctgg ccaggttcga ctcaataatg gccgcgatta      1560
     gtcagatgat cgaaaggcag gagaaagcaa acgaggaggc aaggaaggca gaggaagaac      1620
     gggcaaggaa ggcagaggaa gaaaggcagg aagctgagag aacaagggag gagataattc      1680
     tggtcatgcg caattttgac cagaggttgt cccggttggg cgagcgggtg aacagggtcg      1740
     agtcatccga ggcccaatcg tcaaccgggg cacccctgca gtcatcaact cctcgcaacg      1800
     acagaagacg ggtgagtctg caagacaaat tgaaaacgtt cttgaatgac acaaaaaatg      1860
     aaaatttgtc aaaaggcagc gcggaacttc tcgcgacaac catcagtcaa atacataaat      1920
     tcggccgtga tactcaacac atatacaatt accatctgtc taaagatatg aagttcgaag      1980
     tttttctcga taaatttaag tctgaactcc ggtctaaagg gttattatat gtcattgatt      2040
     cttcgattaa aaatacggaa tttattaacg aagacatgat caaagaagac aaattaaaag      2100
     tcagagatat tttattaagt agagtaacag aaaaatatca tttaagaact tttcgtctgc      2160
     aagatccggt tgtaatattg gaaagtctga aagaacttaa gaagggggag acgcccctta      2220
     caacggccgc gattcgtaaa aaattgcatg aaattaaatt ttacaaaggg aaagaatcgg      2280
     ttgccaaatt catagaaaaa tttgaggaac tggtcagaaa ttatgagact ataagtacgt      2340
     ctggtccctt ttctgaagaa gaaaagcgag atgcctttta tactgccgta atcggagcgg      2400
     tacctagcgt gcaggtgaca gacttcacgc ttaaaatgca aagcagagat ggaaagggta      2460
     tgacatatga aaacctcatg tcgtacatgt taaaggtcga gtcagaaggc ctagcagaag      2520
     ccactggagg tcgccccacg agggcagctt tgactgcctc ttggccccag gaccgtctcc      2580
     gctgcttcaa ctgtgatgac tgggaccata tggctgacaa gtgtccgaag gcaggtaccg      2640
     gactcaagaa gtgttacacg tgtggcacgt tcgtgtatga catcccagct cacaagagat      2700
     gcagcccgag atgtggtgag caaaataagt ctgattcatg ggattttaaa aggcagggcc      2760
     gtggaagtcg agggaatcga ggtggccgcg gcggtggccg tggcagtggc cgaggccgct      2820
     ccaattcccg aaactttggg cagaaaaggg actctagcaa cgtcagggac gaaaaagatc      2880
     ccaaaaggca gaaagtttct gaccagggcc gggagacaaa gggaaaacga gatgtttcag      2940
     ggtcaaataa aggtgagtct ctgacgttga tcgagccccc caatactctg ttttcaaact      3000
     ctgcaggttg ggtaaataat tcagaatcgg atggagaaaa taaaattaaa tttgtcgctg      3060
     attcgggagc gactgatcac tttgcaaagt cagaaaaatt gtttacaaat attgacagaa      3120
     acaaaattgg taaaataaaa tgtgcaaact cagactcatc tgcagacttg aaaacggagg      3180
     gagtgggaaa tttactgctt aaaaattgca ataacgacgt tgagttgcag ggagtggtgt      3240
     gtgctcgcga cttgatcggg aatttactgt cgctgcggaa atttgctgat atgggcttgt      3300
     caatctattt agatgacaag gagattagta ttttcgatcc taatactgaa aatgtatgga      3360
     tatcgggaat atatgaaaaa ccctattgga tggttgaatt tgttaagtcg gacaacaaaa      3420
     gaatgaaagt cttgacggct gagtcaaaag cacacactat tcctgaaaat tcaactacag      3480
     atataaaatt aaataataag tcggaaaatt cagagagctc ggtcggtaag ttaaataatg      3540
     acagttttga agatgtattt ttaataaatg acagaaaatt tcatgaagtc ggaaaagtcc      3600
     tgaccgaaga aataaaagac attcaaagtc cgtttagcga aaattataaa aaattcaaag      3660
     ataacaacgg ggccatgctg tggcatgtca gactgggcca tgcttcgttg gggtatctaa      3720
     gggaactgca gaaaaactat ccggaagtaa aaagtctgaa agaagccgta tttgatgatg      3780
     tgattaagac ttgtgatgtg tgtttaagaa ctaaatccca aaaactgcct ttcccttcgg      3840
     tacgcgaacg agcatcccaa cctctgcaaa taattcattc agatacaatg ggaattatta      3900
     atccaccctc ttacccaaaa agatacagat ttatttcggt atttattgat gattattcca      3960
     aatttgcaat tgcttacccg atgaaaaaca aaagtgatac gggtgaatgt ttagataatt      4020
     ttgttaaagg ctgtagaaat cttctcgggt ttgaagctaa agtgtgttat ctgaggtctg      4080
     atcagggtac cgagtacacg ggaggctccg tgcgaaaaat attaaatgac cttggagctg      4140
     aactccaact gagttgtccg gatacccctg aacataatgg cacgtcagaa aggctgaaca      4200
     aaacaattca aatgaaagtc cgagctctga tatgtgattc gggactcccg gaaaacatgt      4260
     gggacttggc actaaacgca gctgtatttg cgtacaatcg tactccgcat cgctcaaata      4320
     acatggaaat ccctttaatg aagctggctc cgaataaaag gacagaccta agtcagatga      4380
     aaagattcgg ctgcatcgcg tatttgagag ttcagagaaa cactgaaact aaattccatg      4440
     caaaagggaa acgagcagtt atggtaggat acacgccgac agggtatcgt ctgctttgtc      4500
     cggacgaagg aaagttttat gaaagtcggg acgtcagatt taacgagcgt tttgtgtatg      4560
     gagacgtttt tggtaaaaat tcaattaaaa actgggaaaa tgtgactgta aatattaaat      4620
     tagacgagtg gtttttaaaa ttcgaaaagg aaagagaaga gacagtgtca tcggaggaag      4680
     cgcccccggt ggtacaacgg aaaagaggaa ggccgaaaag actgatagaa acaatggagg      4740
     ccaacttggt ccaagaaagt cgtgtaaagg acgtcagctt tgcgggctta gctctcgggg      4800
     aagaattaac aaaagaccta atttttaaga acggtgatac tgaaacgtca ggaaataatg      4860
     ccatttatgc ggaagatcta gtttaccact ctttgctggc agaaataaat aaagatccag      4920
     cttcatataa agaagcaatg aaggctgtgg ataaagaagg ctggaatcaa gccatccaag      4980
     aagaacttga ctcaatggca aagaatcaag tctggaagtt ggtaaacaga cctgcaggac      5040
     tggtaaatgg taaacgtccg aatatcatcg attcccgatg ggttcttaag aaaaaggttg      5100
     atgctcaagg atgtgagaaa cacaaagcac ggctggtaat acggggtttt aaagataaaa      5160
     atgagtatga tcttacggag acttacgccc cggtgtcaag actgacttta ataaggactg      5220
     ctttggctgt aatcaataaa ttaaatttag atacatgtca gcttgacgtt aaaacggcat      5280
     ttttaaatgg taaccttgac gacgagatat atatggagtt accagaaggt ttggtctgtt      5340
     ccgatctgga aaaacaaagc aaggtatgta agcttcagag agccctctac ggccttaaag      5400
     tcagtccgaa aaaatggcat gaaagattct ctgaggcagc aacgaaaata ggtctaagat      5460
     ctcacatctt ggaaccttgc ctatttactt ggcatgaggc agataaaatc ctgatattgg      5520
     ttctctatgt tgatgacatg cttatagcaa gtaatgattc tggcaaattg aagtctgtga      5580
     aggaaagact gcaaagtgag tttgaaatga ctgacctagg agaagttaaa tcgtttttag      5640
     gcattgaagt cagaagagac agagaaaacc aagttctaac tttaactcag accaattaca      5700
     taaataagat acttaaaaag tttgggtttg atgattctaa gccagtgaaa actcctatgg      5760
     tcacaggtca cgtgttaaat caacaaagaa aacaaagaga gcaatcagaa aggcagattg      5820
     acttgaatga gtccagatcg actgaaagtg ttccctaccg ggaggctgtt gggagcttat      5880
     tatatgctgc caatactgta cgtccggata taagttatgc agtgaatgtg ctgagcaggc      5940
     atcaaataag tccgactaac gaagactgga atatggttaa aagagtattt cggtatctgg      6000
     cagggaccaa atcttatggt ctaagatatt gtggaaggca gcaagggctg gaagcattct      6060
     ccgatgccag ttttggcgat tgcaaagggt ctctaaccac aagcggttac gtaattaaaa      6120
     tctttggaga ctcagtggca tggagaactc acaaacaaac gtatgtgtct ttgtcaacat      6180
     gtcaggcaga gtatgtgtca ctgagtgaag catgtagaga actgatggca gttgataatt      6240
     cgattaaaat catactgaat aatactttgt gtccagcaga tctatggtgc gacaataagg      6300
     cggctgagca aaatgctaaa attataggta gtggtaaatt aagacatatg acagaaattc      6360
     atgagcatta tgttaaagaa tgtgtaaatt atggtagagt aaacgtcaga tggctgaaca      6420
     ctaaagaaca gatggccgat atattcacaa aacctctacc gatcgagctc catgaaaaat      6480
     ttgctagcag aatcgcgaac agcttttgcg actctgactg gtaactaata agttgtctct      6540
     gtttcagata ggcgataaag gagccatgga ccgactcatg gactacttgg gtgcattccc      6600
     agagccgtgg agccgagtca agaacacaca tttatttatc tatttatcta ttttaaatta      6660
     taatttttgt ctaatatact tagctatctt aagtcgggag gaag                       6704
//
ID   Copia-2_CoFl-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-296
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2286-2286 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 296 BP; 65 A; 62 C; 63 G; 106 T; 0 other;
     tgttggcatg tacgactttt cgataggcag tatatatagt gtgaaagaca gcgccacagg        60
     caaggtgata cttgcgggcc ttgtagtcag tacagtgtaa gccaccgtgc cttctacacc       120
     tctcgtcggt tctagcttta ttgtctttgt ctgataagtc ggttgtaagt ctgtaaagtc       180
     tgtaaattgt atctggtgtg ttctacgtcg gtcggcagtt ttattaaata aacttttgtc       240
     taacttgtaa tactcgtttt attatttcgc gcacctcctt tactcacacc tcttca           296
//
ID   Copia-2_CQ-I repbase;    DNA;    INV; 4107 BP.
XX
AC   AAWU01028584;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_CQ_;
KW   Copia-2_CQ-LTR; Copia-2_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 319-319 (2011).
XX
DR   Genome; AAWU01028584; Positions    6466   10572.
XX
CC   Positions [1512-2048] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..4097
FT                 /product="Copia-2_CQ-I_1p"
FT                 /translation="MAESGQEERFFVPLLDGTNFNAWKYRMLVFLEEHELL
FT                 ECIEKEVEEMVELVVKDEDTAQEKAQKQVKIDRRRKMDRKCKSKLVSRIND
FT                 DQLEHIQDEKTPKLIWEKLHRVFLRESVARRMHLQRQLHSMKFDGGSLQSH
FT                 FLRFDRLLRQLRATGAKVDELDAVCSLFLTFGTAFSMVITTLESMKPENLS
FT                 LEYAKCRLLDEEVKQKEIGIESVPAGTSSNRDVAAFSGSAKTKKKLQCWAC
FT                 KQEGHKADACPSKKESDRKKKKKSDNKPKAHLAEESGGVCFVGVGSGDGLR
FT                 RVDWFIDSGCSDHIVNDKSLFESLSPLKCPIEIAIAKDGESIKAEFSGTVK
FT                 LFADVGEKLIDCTVKNVLYVPDLRCNLFSVMRVDDVGMEVSYGNGKVVIQH
FT                 GQRIVASGSRCGKVYRLNLFRATPGNSESLLTCGRIPKSLELWHRRFGHLN
FT                 PKSLVKLIRDDMVVGLNQSVSDKDKDIVVCESCVIGKQTRKPFVTRETRAS
FT                 RVLEVVHSDVCGPIAPVGVEGKKYFVSFTDDWSHFVVLFLMKSKDEVFESF
FT                 QRYEAMVTAKFGRKISRLRCDNGGEYRGKDFEKFCQERGIQIDWTVPYTPE
FT                 QNGVSERLNRSLVEKARAMLDDSGADKRFWGQAVQTAAFLLNRSPTRALKE
FT                 NVTPYELWEGSKPNVAKLRAFGCPVYAHVPKELRKKLDPKAWKGVFVGYHQ
FT                 NGYRVWNPELERIVHVRDVDFAEEKESGSHKSKSLHKISQPIVGDESSDED
FT                 QSNDEQEAASVRSAETDGTSSEQPEDDFDSCEEEPLPQGGGVDQPQRPQRE
FT                 KTAPAWLKDYEVDYAAYALNAMNYVENLPNSLSEARKRSDWKLWEAAINEE
FT                 MESLLKNRTWTLEKLPAKRTPITSKWVFKIKRGTDDKPDRYKARLVARGFS
FT                 QKYGLDYTETYSPVAKLDTLRTVLALANHEKMVIHQMDVRTAFLNGELTEE
FT                 IFMAQPEGFEQGENLVCRLQKSIYGLKQASRAWNDRFHAFVEGRLKFVRSM
FT                 NDQCLYTKQTKAGRLIVLLYVDDVLVIGPSQKAVDAVKSCMSKEFEMTDTG
FT                 EVDCFLGMKIERDVEERKLRISQRQYFQDMLLRFGMQDCKPASTPMECRLK
FT                 LLKGAEKDRTDAPYRELIGCLTYASITTRPDLAAAVNFLSQFQSCPTNTHW
FT                 AHLKRILRYVKGTLDFGLVYRAKEGAPTVEVFTDADWANDPTDRRSISGCV
FT                 YQVLGCTTGWMTRKQNCVSLSSTEAELTALCSAACYEMWLVRLLQDLELKI
FT                 PEPVTFYEDNQSSIRIAEESKDFGRLKHVDVKYHFLRDLVKEDKICLQFLK
FT                 SEDQLADMMTKGLPPGAFRKHRASIGLADGSA"
XX
SQ   Sequence 4107 BP; 1017 A; 966 C; 1311 G; 813 T; 0 other;
     ctttaggtta tcggcccggt cgtattccga aagtctacgg gaatcgcgag tgagtcgggt        60
     gaacgatggc ggaatccgga caagaggagc gtttcttcgt tccactgctc gatgggacga       120
     atttcaatgc gtggaaatac cggatgctgg tgttcttgga ggagcacgaa ttactggaat       180
     gcattgagaa ggaggtcgaa gaaatggtcg agctggtagt gaaggacgaa gacacggcgc       240
     aagagaaagc gcaaaagcag gtcaagattg accggcggcg gaagatggac cgcaagtgca       300
     agtcgaagtt ggtctcccgg atcaacgacg accagctgga acacatccag gacgagaaga       360
     cgcccaagct gatctgggag aagctgcacc gtgttttctt gcgcgaaagt gttgccaggc       420
     ggatgcactt gcaacggcag ttgcactcga tgaagttcga cggcggcagc ctgcagtctc       480
     atttcctccg tttcgatcgg cttcttcggc agctccgggc gactggggcg aaggtggacg       540
     agctggacgc tgtgtgcagt ttgttcctga cgtttggcac ggcattttcc atggtgatca       600
     cgacgctcga atcgatgaag ccggaaaatt tgagcttgga gtatgcgaaa tgccggctgc       660
     tcgacgagga ggtgaaacaa aaggagatag gtatcgaatc ggtgcctgct ggaacgtcat       720
     cgaatcgtga cgtcgctgct ttttctggat cggcgaaaac aaagaagaag ctgcagtgct       780
     gggcgtgcaa gcaggagggg cacaaggccg acgcttgccc gtcgaagaag gagagtgatc       840
     gaaagaagaa gaagaaaagt gacaacaagc ccaaggcaca cttggcggaa gaaagtggtg       900
     gcgtttgctt tgtcggtgtg ggaagtggag acggtttgcg aagagtggat tggttcatcg       960
     actctggttg ttccgatcac atagtgaacg acaaatcgct gttcgaatcg ttgagtcccc      1020
     tgaagtgtcc gattgagata gccatcgcga aggacggtga gtcgatcaag gccgagtttt      1080
     ctggaacggt caagttgttt gctgatgtcg gtgaaaagtt gatcgattgt accgtgaaga      1140
     atgtgctgta tgtcccggac ttgcgttgca atctattttc tgtgatgcgg gttgacgacg      1200
     tgggcatgga agtgtcctac ggaaacggga aagtggtgat acagcacggg cagagaatcg      1260
     tcgcgagtgg ttcccgctgc ggaaaagtgt accgactgaa cttgttcaga gctacgccgg      1320
     ggaacagtga atctctgctg acgtgtggtc gcataccgaa aagtctggaa ctgtggcacc      1380
     gtcgatttgg gcatctcaat ccgaagagtt tggtgaagtt gattcgggac gacatggtgg      1440
     ttggactgaa ccagagtgtg agcgacaagg acaaggacat tgtcgtgtgc gagtcctgtg      1500
     tgatcggaaa gcaaacccgg aagccgttcg taacgcgtga aacgagagcg tcgcgagtgc      1560
     tagaagtggt ccactcggac gtatgtggtc cgatcgcacc ggtcggagtt gaaggcaaga      1620
     agtacttcgt gagtttcacg gacgactgga gccatttcgt ggtgttgttc ctgatgaaga      1680
     gcaaagacga agtgttcgag agcttccaac gttacgaggc gatggtgacg gcgaagtttg      1740
     gtcggaagat cagccgcctt cgctgtgaca acggcggcga gtatcgagga aaggacttcg      1800
     agaagttctg ccaggaacgt gggatccaga tcgactggac tgtgccgtac acgccggagc      1860
     agaacggggt aagtgagcga ttgaatcgca gcctcgtcga aaaggcccgt gcgatgctgg      1920
     acgactcagg agctgacaag cgcttctggg gtcaagcggt gcagacggcg gccttcctgt      1980
     tgaaccggag tcccacgaga gctctcaagg aaaacgtcac gccctacgag ctgtgggagg      2040
     gttcgaagcc gaacgtcgcc aagctgcgcg catttggctg cccggtgtac gctcacgtac      2100
     ccaaggaact ccggaagaag ctcgacccga aggcgtggaa gggcgttttc gttggctacc      2160
     accagaacgg ctaccgagtg tggaaccccg agctcgagcg gattgtccac gtacgagatg      2220
     tcgacttcgc ggaggagaag gaatccggat cgcacaaaag taagtctcta cacaagattt      2280
     ctcaaccgat tgttggagac gagtcgtcag acgaggacca gtcaaacgat gagcaagaag      2340
     cggccagtgt gcgttcagct gaaacggatg gcacatcgag tgagcaaccg gaagacgact      2400
     ttgacagttg cgaggaggaa cccctacctc aaggaggtgg cgtagaccaa ccgcagcgtc      2460
     cgcaacgaga gaagaccgcg cctgcctggc tcaaggacta cgaggtcgac tatgcagcgt      2520
     acgccttgaa cgcgatgaac tacgtcgaaa atcttccgaa ctcgctctcg gaggccagga      2580
     agcgaagcga ctggaagctg tgggaagcgg ctatcaacga ggagatggag tctctgttga      2640
     aaaaccgaac ctggacgctg gagaaacttc ctgcgaagcg gacaccaatc acaagtaagt      2700
     gggtgttcaa gataaagcgg ggaaccgacg acaaacctga ccggtacaag gcccgcctgg      2760
     tcgctagagg gtttagccag aagtacggcc tggactacac tgagacgtac tcgcccgttg      2820
     ccaagctgga cacgttgcgc actgtcctag ccctggcaaa ccacgagaag atggtgatcc      2880
     accagatgga cgttcgcaca gcctttctca acggcgaact gacggaggag atctttatgg      2940
     ctcaacccga ggggttcgag cagggcgaga atctggtgtg tcggcttcag aagtccatct      3000
     atgggttgaa gcaagcatca cgcgcgtgga acgaccgttt ccatgcgttc gtcgaaggcc      3060
     ggctgaagtt cgtgcgcagc atgaacgacc agtgtctcta caccaagcag acgaaagctg      3120
     gaaggttgat cgtacttctg tacgtcgacg atgtgttggt catcgggccg tcgcagaaag      3180
     ctgttgacgc ggtgaagtcg tgcatgtcca aggagtttga gatgactgac accggagaag      3240
     tggactgttt ccttggaatg aaaatcgagc gcgacgtgga ggaacgaaag ttgcggatca      3300
     gccagcggca gtacttccag gacatgctgc tgcgttttgg aatgcaggac tgcaaaccag      3360
     cgtcgacgcc gatggagtgt cgtttgaagc tactgaaggg tgccgagaag gaccgcacgg      3420
     acgccccgta cagagagctg atagggtgtc taacctacgc ttcaatcacg acgagaccgg      3480
     acctggctgc agcagttaac ttcctaagcc agttccagag ctgcccgacc aacacccact      3540
     gggcgcacct gaaaaggatc ttgcgctacg tgaagggaac gctggacttc ggtctagtgt      3600
     atcgtgcgaa ggaaggagcg ccaactgttg aggttttcac ggacgcggac tgggccaacg      3660
     acccaacgga ccgacgttcg atcagcggat gtgtgtacca agttctggga tgcactactg      3720
     ggtggatgac ccggaagcaa aactgcgtct cactctcatc caccgaagcg gagctgaccg      3780
     cgctttgcag cgctgcgtgc tacgagatgt ggctcgtacg actgctgcag gatttggagc      3840
     tcaagattcc tgaaccagtc accttctacg aagacaacca gtcgtcgata cggatcgcag      3900
     aagaatcgaa ggattttgga cggctgaagc acgtggacgt gaaataccat ttcctgcggg      3960
     acctggtgaa ggaggacaag atttgcctgc agttcctgaa gtcagaagat caacttgcgg      4020
     atatgatgac caaggggctg ccacccggag ctttccggaa acatcgtgcc agcattggat      4080
     tggcagacgg cagcgcttga gggggag                                          4107
//
ID   Copia-2_CQ-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   AAWU01028584;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_CQ_;
KW   Copia-2_CQ-I; Copia-2_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-211
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 320-320 (2011).
XX
DR   Genome; AAWU01028584; Positions    6255    6465.
XX
SQ   Sequence 211 BP; 58 A; 49 C; 56 G; 48 T; 0 other;
     tgttgaggat acaaccctgt cgtctaggtg tgccgagtag tgcgccttca ctgtacacag        60
     gaagtgtacc gcgagagaga gagagagagc tgtgaccgag ctgtcactgc aaaacagcca       120
     ttaccatttg tgatcgagca gaataaacac gtgtgtgaag taaaaccgcg ttttattccg       180
     tgtgttccgt tccgcaagaa tccgaaaccc a                                      211
//
ID   Copia-2_DAn-I repbase;    DNA;    INV; 3978 BP.
XX
AC   AAPP01019430;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DAn_;
KW   Copia-2_DAn-LTR; Copia-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3978
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019430; Positions   85606   89583.
XX
CC   Positions [1380-1910] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..3938
FT                 /product="Copia-2_DAn-I_1p"
FT                 /translation="MSALYQIDKLEETNYDTWKIQMRSVLVHSGLWSVTSG
FT                 ELTETNVPEGQQFAALDSKALATITLSVKSSQLTYIKNCLTAVEAWTKLKE
FT                 VHQPSGPVRKVQLYKKLLNKRMEQGQSMTTYISEFVEILDGLTGVGIELND
FT                 ELRTIVLLSSLPEQFEHFVVAMETRDKLPSFEVLTIKLKEESERKGIADER
FT                 VDTKAFAATQKHNSQTKTYGQKKRKNIVCFKCGEQGHIKSQCQNEGEGDHR
FT                 MASRNVANRQSSLLHACDVNNIDNSTWCLDSGATSHMCCERELFTKFEKHT
FT                 EQIGLANAGFLQAEGIGDVKIQTGQCMLTLKNVLYVPKMTGNFYSVSSAVQ
FT                 NRCKVTFDLENAKVMQDGECIVKAKKIGNLYLFVGGRSKCFAMSAVDGILL
FT                 HKRYGHINFSSLKEMVSKGIVRGIDNIRLPENISCKTCMVSKIHVQPFPSA
FT                 TSNRAKENLDLVHADGCGPFPTLSLRGSQYFLTFIDDKSRRIFVYFLRGKN
FT                 EVLPKFVDFKNLVERQTGRRLKCLRSDNGGEFVNKQFDECLRQHGIDRQLT
FT                 IAYTPQQNGVAERANRTLVEMSRCLLVQAGLGDQFWAEAVNTSVYLRNRSP
FT                 TSALESMTPMEAWTGKRPYVQHLKVFGSLAVALDKGPRKGSKFQPKGKEYI
FT                 MVGYSVAAKGYRLYDPSTRQLVEKRDVLFDEHHDVASKGDAVTINLEELEE
FT                 AHQQQGPGDAEIVSDLSIDAGSSDESTDQYESAEEKSEHVVEEARRGPGRP
FT                 KIIRSGKPGRPKKQYNILGALVSENVPIPLTCKEALKSKYAKEWREAMERE
FT                 HDSLVANQTWEITDLPKNQRAIGCKWVFNVKRDKDGQIERFKARLVAKGCS
FT                 QQFGVNYLETFSPVCRLESVRFIIALAAELKLHLHQMDVCTAYLNSDLNET
FT                 VYMKQPEGYSDETNPDKVLLLKRAIYGLKQSGRAWNEKLNGVLTNMGFVAC
FT                 DNEPCLYKHCGEGNLVLILVYVDDILIASQSHEDLLKIKSSISRSFECVDK
FT                 GQLNHFLGMEIERDGDLGAITLGHTQYIKDLLHTHGIDFCKSAKTPLDPGF
FT                 QVDCTSPQCKKVDPTSYQSVVGELMWLALTTRPDILHSVSKLAQRNQNPHA
FT                 EHMAGVKHVFRYLSSTIDKKLHYRQCGQSFCGYVDADWAGDRLDRKSYTGY
FT                 IYLLAGGPISWRSEKQRSVALSSTEAEYMALSAAFKEAIVMRRLIMEIGCG
FT                 DNDTPIVVYGDNLSAQALTKNPVHHSRTKHIDIRYHFVRDVVKKGQVLLKY
FT                 KCTTEMIADILTKNLPKTKHEELTNMFNLF"
XX
SQ   Sequence 3978 BP; 1222 A; 751 C; 1022 G; 983 T; 0 other;
     agaggttatg ggcccaggca ctggagaatt caagttattc ggtgtgtgac tcgatattaa        60
     gaacaatgag tgctctttat caaattgata agttagagga gacgaactat gacacatgga       120
     aaatacagat gcgatctgta ttggtgcatt ccggtttgtg gagtgttacg tctggagagc       180
     taactgaaac aaatgttcca gaaggacaac agtttgcggc cttggacagt aaggcgttgg       240
     caacaataac attgagtgta aagtcatctc aattgaccta catcaagaat tgcttgacgg       300
     ctgtggaggc atggaccaag ttgaaggagg ttcatcaacc aagcggacct gtacgaaagg       360
     tacagttgta caagaaattg cttaataaac ggatggagca agggcagagt atgacgacct       420
     acataagtga atttgtggaa attctggatg gtctaactgg agttggaata gagctaaacg       480
     acgaacttcg cactatcgtt ttgctatcaa gccttccaga gcaatttgaa catttcgtgg       540
     tcgctatgga gacacgagat aagttacctt cgttcgaagt tctcaccata aagttaaagg       600
     aggagagcga aagaaaagga atagcagatg aacgagttga cactaaggca ttcgctgcaa       660
     cgcagaaaca caactcacag acgaaaacct atgggcagaa gaaaagaaag aatatcgttt       720
     gtttcaagtg tggtgaacaa ggacacatta agtcccagtg tcaaaatgag ggtgagggag       780
     atcaccgcat ggcatcaaga aatgtggcga atcgccaaag cagccttttg cacgcctgtg       840
     acgtcaacaa cattgacaat tcaacatggt gtttggatag tggcgcaaca agccatatgt       900
     gttgcgaaag agagctattc acaaagtttg agaaacacac tgaacagatc ggacttgcca       960
     atgctggttt ccttcaagca gaaggtatag gtgacgtcaa gatacagaca ggccagtgca      1020
     tgttgacact aaaaaatgtt ctttacgttc cgaagatgac cggaaatttc tattcagtga      1080
     gcagtgctgt ccagaacaga tgcaaggtga cctttgactt agagaatgcc aaggtgatgc      1140
     aagatggaga atgcatagta aaagccaaaa agattggcaa cttgtatttg tttgtgggtg      1200
     gtcgcagcaa atgttttgcc atgtcagctg tagatgggat tttgctacac aagagatatg      1260
     gacatattaa tttctctagc ttgaaagaga tggtatccaa agggatagtt cgagggatag      1320
     ataatattcg gttgccagag aatattagtt gcaaaacgtg tatggttagc aaaatccatg      1380
     ttcaaccctt tccatcagca acaagtaatc gggccaagga gaatttagat ctagtacatg      1440
     cagatggttg tggacctttc ccaacattgt ccctccgagg ttcccagtat tttttgacgt      1500
     tcattgacga taagtccaga aggatttttg tttacttcct gcgtgggaag aatgaggtgc      1560
     tacccaaatt cgtcgatttc aagaacctgg tggagcgaca gacaggaaga agacttaaat      1620
     gcctgcggag tgataatggc ggagaatttg tcaataaaca gtttgacgaa tgtctgaggc      1680
     agcatggaat cgacagacag ctaacaatag cgtatactcc ccagcaaaat ggagttgcgg      1740
     aacgggcaaa tcgtacgcta gtggagatgt caagatgcct tctggtccag gcgggactgg      1800
     gagatcagtt ttgggcagaa gctgtcaaca cttcggttta tttgcgaaac cgctccccta      1860
     ctagcgcatt agagagtatg actcctatgg aagcgtggac gggtaagaga ccttatgtac      1920
     aacacctaaa agtttttgga tctcttgcag ttgctctgga caagggtccg aggaagggca      1980
     gcaaatttca acctaaaggc aaagagtaca ttatggttgg gtactctgtg gcagcaaaag      2040
     gttatcgact atatgatcca tcaactcggc aattggtcga gaaacgagat gtgttatttg      2100
     atgaacatca tgacgtggca tccaagggtg atgctgtgac gatcaatctg gaggaactgg      2160
     aggaggccca ccagcagcag ggacccggag atgcagaaat cgtttctgac ttatccatcg      2220
     acgccggcag ctccgatgag agtacagatc agtacgagag tgccgaagaa aaaagtgagc      2280
     atgtcgtgga ggaggcacgc aggggccccg gtcgtcctaa gatcattcgg agtggaaaac      2340
     ctggacgccc aaagaagcag tacaatatac taggcgccct tgtttcggaa aatgttccga      2400
     ttccattaac ttgcaaagag gcgctgaaga gtaaatatgc aaaggagtgg cgtgaagcca      2460
     tggaaagaga acatgattct ctagttgcca accagacttg ggaaatcact gatttaccca      2520
     aaaatcagcg agcaattgga tgcaagtggg tattcaacgt gaagcgtgat aaagatggcc      2580
     aaatagaacg tttcaaggct cgactggtag caaaaggatg ctcccagcag tttggcgtaa      2640
     attacctaga aaccttttcg ccggtatgcc gattggagag tgtgcgcttt attatagcac      2700
     tggcggctga gctcaagcta catcttcatc aaatggatgt atgcaccgcg tatcttaaca      2760
     gtgatctgaa tgagacggtc tacatgaagc agccggaagg gtactcagat gaaacaaatc      2820
     ctgacaaggt attgcttctg aaaagagcaa tatatggttt aaagcaatcc ggaagggcct      2880
     ggaacgagaa gctaaatggc gtgttaacta atatgggatt cgttgcctgt gataacgagc      2940
     catgtttgta caaacattgt ggagaaggta atcttgtatt aatccttgta tatgttgacg      3000
     atatacttat agccagccaa tcgcacgagg atttgctaaa aatcaagagc agcatctcac      3060
     gatcattcga gtgcgttgac aagggtcaac ttaaccattt cctgggcatg gaaatcgaac      3120
     gggacggtga tcttggagca attactttag ggcacacgca atatatcaag gacttattgc      3180
     atacccatgg gattgatttt tgcaaatcgg cgaagacacc tttggatcct ggttttcaag      3240
     tagattgcac aagtccccaa tgcaaaaagg tggatcctac ttcttatcag tccgtagtag      3300
     gagagcttat gtggctagct cttacaacaa ggccagacat attgcattca gtgtcaaaat      3360
     tggcacaacg gaatcaaaac ccgcatgctg aacacatggc aggcgtaaag cacgtcttta      3420
     gatatctctc atctacgatt gacaagaaac tacactaccg acaatgtggt caatcgttct      3480
     gtggatacgt ggacgcggat tgggcaggtg ataggcttga caggaagtcc tatactggtt      3540
     atatctacct gttagcaggt ggtccgattt cttggcgttc ggaaaagcag cgaagtgtgg      3600
     cgttgagcag taccgaggcg gagtacatgg cactatcggc ggcatttaag gaggcgatag      3660
     tcatgcgaag gctgattatg gaaattggtt gcggagacaa cgacaccccg atcgtcgttt      3720
     atggggataa tctgagtgcg caggcgctaa ctaagaatcc cgttcatcat tccagaacaa      3780
     agcacattga tatacgttat cattttgtta gagacgttgt taagaaaggg caagttttgt      3840
     taaaatacaa atgtacaacc gaaatgatag cagatatttt gacaaaaaat cttcctaaaa      3900
     cgaaacacga agagcttaca aatatgttta atttgttttg atatttagtt ttgtaaacaa      3960
     gcttgcattg aggaaggg                                                    3978
//
ID   Copia-2_DAn-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   AAPP01019430;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DAn_;
KW   Copia-2_DAn-LTR; Copia-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-215
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019430; Positions   85391   85605.
XX
SQ   Sequence 215 BP; 74 A; 35 C; 38 G; 68 T; 0 other;
     tgtagaaaat aaagtaccct gtatactttg gtatgttaca atgcacgctt ttatagatat        60
     aggaaggaga aagagatctt cgagtagtta taattgtccc actctaagaa atagagaata       120
     agaaaatatg tatatcaatt tttcctcagt cacaaataaa gttccgaagc atacacacgg       180
     tgttttaatt ttgtcgcttc gaattctgcc gctca                                  215
//
ID   Copia-2_DBp-I repbase;    DNA;    INV; 3737 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DBp_;
KW   Copia-2_DBp-LTR; Copia-2_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3737
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 650-650 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1380-1952] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..1727
FT                 /product="Copia-2_DBp-I_2p"
FT                 /translation="MSALYQIDKLEETNYDTWKIQMRSVLVHSGLWSVTSG
FT                 ELTETNVPEGQQFAALDSKALATITLSVKTSQLAYIKNCLTAVEAWTKLKE
FT                 VHQPSGPVRKVQLYKKLLNKRMEQGQSMTTYISEFVEILDCLTGVGIEIND
FT                 ELRTIVLLSSLPEQFEHFVVAMETRDQLPSFEVLTIKLKEESERKGITEER
FT                 VDTKAFAATHKHNSQTKTYGQKKRKNIVCFKCGEQGHIKSQCRSEGEGDHR
FT                 MASRSVVNRQSSLLHACDVNNIDNSTWCLDSGATSHMCCARELFTKFEKHT
FT                 EQIGLADAGFLQAEGIGDVKIQTGQCMLTLKNVLYVPKMTGNFYSVSSAVQ
FT                 NRCKVTFDIENAKVMQDGECIVKAKKIGNLYLFEGGRSKCFAMSAVDGILL
FT                 HKRYGHINFSSLKEMVSKGIVRGIDNIRLPENINCKTCMVSKIHVQPFPSA
FT                 TSNRAKELLDLIHADVCGPFPTPSLGGSKYFLTFIDDKSRRIFVYFPRGKN
FT                 EVLSKFIEFKNLVERQTGRRLKCLRSDNGGEFVNKQFDECLRQHGIDRQLT
FT                 IAYTPQQ"
FT   CDS           2434..3621
FT                 /product="Copia-2_DBp-I_1p"
FT                 /translation="MRPAVWRKLESVRFIIALAAELKLHLHQMDVCTAYLN
FT                 SDLSETVYMKQPEGYSDESNPDKVLLLKRAIYGLKQSGRAWNEKLNGVLVN
FT                 MGFVACDNEPCLYKHCGEGNLVLILVYVDDIIIACQSHEDLLKIKSSISQS
FT                 FECVDKGQLNHFLGMEIERDGDLGAITLGHTQYIKDLLHTHGSDFCKSAKT
FT                 PLDAGFQVDCTSPQCKKVDPTTYQSVVGELMWLALTTRPDILHSVSKLAQR
FT                 NQNPHAEHMAGIKHIFRYLSSTIDMKLHYRQCGQSFCGYVDADWAGDRLDR
FT                 KSYTGYIYLLAGGPISWRSEKQRSVALSSTEAEYMALSAAFKEAIVMRRLI
FT                 MEIGCGDNDTPIVVYGDNLSAQALTKNPVHHSRTKHIDIRYHFVREVVKKG
FT                 LK"
XX
SQ   Sequence 3737 BP; 1144 A; 713 C; 981 G; 897 T; 2 other;
     ataggttatg ggcccaggca ctggagagtt caagttattc ggtgtgtgac tcgagattaa        60
     gaacaatgag tgctctttat caaattgata agttagagga gacgaactat gacacatgga       120
     aaatacagat gcgatctgta ttagtgcatt ccggtctgtg gagtgttacg tctggagagc       180
     taactgaaac gaatgttccg gaaggacaac agtttgcggc cttggacagt aaggcgttgg       240
     cgacaataac attgagtgtc aagacatctc aattggccta catcaagaat tgcttaacgg       300
     ctgtggaggc atggaccaag ttgaaggaag ttcatcaacc aagcggacct gtacgaaaag       360
     tacagttata caagaaactg cttaataaac ggatggagca agggcagagc atgacgacct       420
     acataagtga atttgtggaa attctggatt gtctaactgg agttggaata gagataaacg       480
     acgaacttcg cactatcgtt ttgctatcaa gtcttccaga gcaatttgaa catttcgtgg       540
     tcgctatgga gacacgagat cagttacctt cgttcgaagt tctcaccata aagttaaagg       600
     aggagagcga aagaaaagga ataacagagg aacgagtcga cactaaagca tttgctgcaa       660
     cgcacaagca caactcacag acaaaaacgt atggacagaa gaaacgaaaa aatatcgttt       720
     gtttcaagtg tggtgaacaa gggcacatta agtcccagtg tcgaagtgag ggtgagggag       780
     atcaccgcat ggcatcaaga agtgtggtga atcgacaaag cagcctgttg cacgcctgtg       840
     acgtcaacaa cattgacaat tcaacatggt gcttggatag tggcgcaaca agccatatgt       900
     gttgcgcaag agagctattt acaaagtttg agaagcacac tgaacagatc ggactggccg       960
     atgctggttt ccttcaagca gaaggtatag gtgacgtcaa gatacagaca ggccagtgca      1020
     tgttgacact aaaaaatgtt ctctacgttc cgaagatgac cggaaatttc tattccgtga      1080
     gcagtgctgt ccagaacagg tgcaaggtga cctttgacat agagaatgcc aaggtgatgc      1140
     aagatggaga atgcatagtg aaagccaaaa agattggcaa cttgtactta tttgaaggtg      1200
     gccgaagtaa atgttttgcc atgtcagctg ttgatggaat cttgctacac aagagatacg      1260
     gacatattaa tttctctagc ttgaaagaga tggtatccaa agggatagtt cgaggaatag      1320
     ataatattcg gttgccagag aatattaatt gcaaaacgtg tatggttagc aaaatccatg      1380
     ttcaaccttt tccatctgca acgagtaatc gggctaagga gcttttggat ctgatacacg      1440
     cagatgtttg tggacctttt ccaacaccgt ccctcggagg ttccaagtat tttctgacgt      1500
     tcattgacga taagtccagg aggatttttg tttacttccc gcgtggaaag aacgaggtgc      1560
     tatccaaatt catcgaattc aagaatctgg tggaacggca gacaggaaga agattgaaat      1620
     gcctgcggag tgataatggc ggagaatttg tcaataaaca gtttgacgaa tgtctgaggc      1680
     agcatggaat cgacagacag ctaacaatag cgtatactcc ccagcaaaan agagttgcgg      1740
     aacgggcaaa tcgtacgcta gtggagatgc tctggacaag ggtccgagga agggcagcaa      1800
     atttcaacct aagggcaagg agtacattat ggttgggtac tctgtggcag ccaaaggtta      1860
     tcgactatat gacccatcaa ctggacaatt ggtcgagaaa cgggatgtat tatattatga      1920
     acatcatgac gtggcatcca agggtgatac tgtgacgnta gagccggagg aactggaaga      1980
     ggcccgccag cagcagggac ccggagatgc agaaatcgtt tctgacttat ccatcgacgc      2040
     cgacagctcc gatgagagca cagatcagta cgagagtgct gaagaaaagg gtgagcatgt      2100
     cgaggaggag gcacgcaggg gccccggccg ccctaagatc atccggactg gaaaacctgg      2160
     acgtccaaag aagcagtaca atatcctagg cgcccttgtt tcggaaaatg ttccgattcc      2220
     gttatcttgc aaagaggcgc tggagagtac aaatgcaaag gagtggcgtg aagccatgga      2280
     aagagaatat gattctctgg ttgccaacca gacttggcaa gtcactgatt tacccaaaaa      2340
     tcagcgagcc attggatgca agtgggtgtt caacgtgaag cgtgataaag atggccaaat      2400
     agaacgtttc aaggctcgac tggtagcaaa aggatgcgcc cagcagtttg gcgtaaattg      2460
     gagagtgttc gctttattat agcactggcg gcggagctca agctacatct tcatcaaatg      2520
     gatgtatgca ccgcgtatct caacagcgat ctgagtgaga cggtctacat gaagcagccg      2580
     gaagggtact cagatgaatc gaatcctgac aaggtattgc ttctgaagag agcaatatat      2640
     ggcttgaaac aatcaggaag ggcctggaac gagaagctaa atggcgtatt ggttaatatg      2700
     ggattcgttg cctgtgataa cgaaccatgt ttgtacaaac attgtggcga aggtaatctt      2760
     gtactaatcc ttgtatatgt tgacgatata attatagctt gccaatcgca cgaggatttg      2820
     ctgaaaatca agagcagcat ctcacaatca ttcgagtgcg ttgacaaggg tcaacttaac      2880
     catttcctgg gcatggaaat cgaacgagac ggcgatcttg gagcaattac tttgggacat      2940
     acgcaatata tcaaggacct tttgcatacc catggaagtg atttttgcaa gtcggcgaag      3000
     acacctttgg atgctggttt ccaagtagac tgtacaagcc ctcaatgcaa aaaggtggat      3060
     cccactactt atcagtccgt agtaggagag cttatgtggc tagctcttac aacaaggcca      3120
     gacatattgc attcggtgtc aaaattggca cagcggaatc aaaacccgca tgctgaacac      3180
     atggctggca taaagcacat ctttagatac ctctcatcta cgattgacat gaaactacac      3240
     tatcggcaat gtggtcaatc gttctgtgga tacgtggatg cggattgggc aggcgatagg      3300
     cttgacagga agtcatatac tggttacatc tacctgttag caggtggtcc gatttcttgg      3360
     cgttcggaaa agcagcgaag tgtggcgtta agcagtaccg aggcggagta catggcactt      3420
     tcggcggcat ttaaggaggc gatagtcatg cgaaggctga ttatggagat cggttgcgga      3480
     gacaacgaca ccccgatcgt cgtgtatggg gataatctga gtgcgcaggc gttaaccaag      3540
     aatcctgttc atcattccag aacgaagcac attgatatac gttatcattt tgttagagaa      3600
     gttgtaaaga aagggctgaa atgattgcag atattttgac aaaaaatctt cctaaaacga      3660
     aacgcgaaga gtttgacaaa aatgtttaat tcgttttgat aataattttt tgtaaacaag      3720
     cttgcattga ggaaggg                                                     3737
//
ID   Copia-2_DBp-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.05, Created)
DT   01-JAN-2012 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DBp_;
KW   Copia-2_DBp-I; Copia-2_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-238
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 651-651 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 238 BP; 74 A; 40 C; 43 G; 81 T; 0 other;
     tgtagaaaat aaagtaccct gtacattttt agtatgatgc aatgcacgct tgtatagtta        60
     taggaaagag atagagatct tgaagtagtc ataattgtcc ctctctaaga agtagagaat       120
     aagaaattat gtataccaac tttttcattt ttccttcgca tacattttta gtcgcaaata       180
     aagttccgaa gcatacacac ggttttctga ttttggtggc ttcgaattct gccgctca         238
//
ID   Copia-2_DEl-I repbase;    DNA;    INV; 4722 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4722
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 451-451 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(89..772,727..1689,1680..3155,3061..4359)
FT                 /product="Copia-2_DEl-I_1p"
FT                 /note="zinc-finger, integrase, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MYMMDKSKRNIKPFDGEKYSVWKFRIRALLAEQDILK
FT                 VIDSETPDEIDESWVKAERSAKNILIEHLSDSFLNFATSDNTAREILRSLD
FT                 SVYERKSIASQLSVRKRLLALKLKSEMALVNHFIIFDELVGELLASGAKMD
FT                 EMDRISHLLITAIETLSEENITLAFVKNRLLDHEVKIKNANNDTSRKVMQA
FT                 EAKTKFNNNYKNNYKNNNSSKFKQKIIIQIIIHANRIITKNYNTNYNTRKP
FT                 YNMKQKVNNIKCHHCGKLGHMKKDCFGYNKQINTENNKENNKRAHTATTKP
FT                 GFAFMLKSVNKNVNNSKVNVNFILDSGATDHLINDEALFMDHADLETPIKI
FT                 AVAKHGEYIFATKRGVVRLKNEYQITLEDVLYCGEVAENLISVKRLQEAGV
FT                 TVVFDENGVKLNKNGVTIAENTGAYNMPVIEFKAYKVNSKNTDLYKLWHER
FT                 LGHISKGKMLEIKRKNLFNDNRLLDNVNPSEDICEACLNGKQARLRFSKYK
FT                 IKEHINRPLYVIHSDVCGPITPTTIDDKNYYVIFVDQFTHYCVTYLIKHKS
FT                 DVVGCVKDFVAKSETHFNLKVVNLYIDNGREYLSNDMREFCVQKGISYHLT
FT                 VPYTPQLNGVSERMIRTITEKARAMVNGARLDKSFWGEAVLTATYLINRIP
FT                 SRALGDRETTPYEMWHNRKPILKYLKIFGSTVYVHNKIRKRKFDDKSFKTI
FT                 FVGYEPNGLKVWDIENEKFMVARDVVVDETNMVNSRATKSEILNDSKDNNK
FT                 KIKFLKESKESMPLNESKEGVECNFQNESMEYFEQGFLNESKDKVNENFQN
FT                 ESMEYFEQDFLNESKDNVNENFQNESMEHFKLKILNESKDYVNKNVQNESF
FT                 EQEILNESKDSDNNSVLNESKEGKQPRKISTNEIGNKANDITRRSERLKNR
FT                 PHISYSEDDLSPNNFIMNAHTVFNEVPYSFDEVQSRKDKSLWVEAIKVELS
FT                 AHELNKTWTIVKRPENKNIVDCKWVFTLKHDETGNPIRYKARLVARGFTQK
FT                 YQIDYDETFAPVARISSFRFILSIANQYNLKSSQCTTTKRSLLLREFLVSV
FT                 LFYRLQINIILSHHNVKTAFLNGTLKEEIYMKVPQGIICNRENVCKLNKAI
FT                 YGLKQAARCWFEVFEQALKECRFKNSPVDRCIYVQDRGDIKKNIYVLLYVD
FT                 DLVIATSDIKVLNNFKQYLMTKFRMTDLGEIRYFIGMKIEIGQDQISLSQS
FT                 AYIKKVLNKFNMEDCKSVNTPLPSKLDYEMLNADDKYDAPCRNLIGSLMYI
FT                 MLCTRPDIATAVNILSRYTNKNNIELWQCLKRVLRYLKGNIDLKLIFKKNI
FT                 NYEHIFVGYVDSDWGGNENDRKSTSGYLFKMFNSNLICWNTKRQNSVAASS
FT                 TEAEYMALFEAVREALWLKSLLESIYIKFDKPIKLFEDNQGCISIASNPSC
FT                 HKRSKHIDIKYHFSREQIENNIISIEYIPTENQLADIFTKPLPPGRFSLLR
FT                 RQLGLHQEE"
XX
SQ   Sequence 4722 BP; 1789 A; 661 C; 918 G; 1354 T; 0 other;
     ggttatgggc ccagtccacg ttcgtttaga aaattaaaag taaaaaaaac aatttttcag        60
     tttatacaca cgcgagtgaa tacatcatat gtacatgatg gacaaatcaa agcgaaacat       120
     aaaaccgttt gacggtgaga aatattcagt ttggaaattt agaataagag cacttcttgc       180
     tgaacaagac atattaaaag taattgatag tgagactcct gatgaaatag atgaaagttg       240
     ggttaaggca gagaggagcg ctaaaaacat attgatagag catttgagtg actccttctt       300
     gaatttcgca acgagcgaca acacagcacg cgaaattctc agaagtctgg attccgtgta       360
     tgaacgaaaa agtattgcgt cgcagttatc tgtgcgcaaa cggttgttgg cgcttaaact       420
     caagagtgag atggcactag tgaaccactt tattattttt gatgaactag ttggcgaact       480
     tttagcgtcg ggggctaaaa tggacgaaat ggatagaatc tcgcatttgc taattacagc       540
     aatagagaca ctttcagagg aaaatataac gctcgcgttt gtaaagaacc gtttactaga       600
     ccacgaagta aaaattaaaa acgctaataa cgacactagt agaaaggtta tgcaggctga       660
     ggctaaaact aaatttaaca ataactataa aaacaattat aaaaacaata atagctctaa       720
     atttaaacaa aaaattataa tacaaattat aatacacgca aaccgtataa tatgaaacaa       780
     aaagtaaata acataaaatg ccatcattgt ggaaagctag gacacatgaa aaaagattgt       840
     ttcggctata ataaacaaat aaatactgaa aataacaaag agaataacaa acgagcgcac       900
     actgcaacca caaagccagg cttcgcgttc atgctgaaaa gtgtaaataa aaatgttaat       960
     aattcaaaag tgaacgtgaa ttttattctt gactcgggtg ctaccgacca cctcataaac      1020
     gatgaggctt tatttatgga ccatgctgat ctggaaactc caataaaaat tgccgttgct      1080
     aagcatgggg agtatatctt cgcaacaaag cgaggagtcg tccgtctgaa aaatgaatat      1140
     cagataacgc tggaggacgt actgtactgc ggagaagttg cagaaaacct gatatcggtc      1200
     aaaaggctac aagaggctgg agtaacagta gtattcgacg aaaatggagt taaattgaac      1260
     aaaaacggtg tcacgattgc tgaaaacaca ggtgcgtaca atatgccagt tattgaattt      1320
     aaagcatata aagttaattc gaaaaataca gatttatata aactatggca cgaaaggttg      1380
     ggtcatataa gtaaaggaaa aatgttagaa ataaaaagaa agaatttatt taatgataat      1440
     cgtctacttg ataatgttaa tccttctgag gatatatgcg aagcttgttt gaatggaaag      1500
     caagccagat tacgattttc taaatataaa attaaagagc atataaatag acctctttat      1560
     gttattcatt ctgatgtctg tggtccgata acaccaacaa ctattgatga taaaaattac      1620
     tatgtaattt ttgtggatca atttacccat tattgcgtca cttatttaat aaaacataag      1680
     tcggatgtgt aaaagatttt gtggcaaaaa gtgaaacaca ctttaatctt aaagttgtta      1740
     atctatacat tgacaacggt agggagtatt tatctaatga tatgcgtgag ttctgcgttc      1800
     agaaaggaat aagttaccac ttgactgtac catatactcc acaattaaat ggagtttcag      1860
     aacgaatgat cagaacaatt actgaaaagg ctcgtgccat ggtaaatggt gccagactag      1920
     ataaatcttt ttggggtgaa gcggtgttga cggcaacgta tttaataaat aggattccaa      1980
     gcagagcact tggagatcgc gaaacaacgc cgtatgaaat gtggcataat agaaagccga      2040
     ttttgaaata tttaaaaata tttggttcga ctgtttatgt gcataacaag attaggaaac      2100
     ggaaatttga cgataaatcg tttaaaacta tatttgtcgg gtacgaacca aatggcttaa      2160
     aggtatggga tattgaaaat gagaaattta tggttgccag agacgtagtt gtagatgaga      2220
     caaatatggt taactctaga gctactaaaa gtgaaatcct gaatgatagt aaggataata      2280
     ataagaaaat taaattcctg aaggagagta aggaaagtat gcccctgaat gaaagtaagg      2340
     aaggtgttga atgtaatttc cagaatgaga gtatggaata ttttgaacaa ggtttcctga      2400
     atgagagtaa ggataaagta aatgaaaatt tccagaatga gagtatggaa tattttgaac      2460
     aagatttcct gaatgagagt aaggataacg taaatgaaaa tttccagaat gagagtatgg      2520
     aacattttaa actaaaaatc ctgaatgaga gtaaggatta cgtaaataaa aatgttcaaa      2580
     atgagagttt tgaacaagag atcctgaacg aaagtaagga tagcgataac aacagtgtcc      2640
     tgaatgagag taaggaagga aagcagccta gaaaaatttc aacaaatgaa attggtaata      2700
     aagctaacga tataactaga agaagcgaaa gattgaaaaa tagaccacac atatcttata      2760
     gtgaagatga tctaagtcca aataatttta taatgaatgc tcacactgtt tttaatgaag      2820
     ttccttattc atttgatgaa gtacaaagta gaaaagataa gtctttatgg gtcgaagcta      2880
     tcaaggtcga actctctgct catgaattaa ataagacatg gactattgtt aaaaggcctg      2940
     aaaataagaa cattgtagat tgtaagtggg tatttacttt gaagcatgat gaaacgggaa      3000
     atccaattag atataaagca agactagttg cacgcggttt tacacaaaaa tatcaaatag      3060
     actacgacga aacgttcgct cctgttgcga gaatttctag tttccgtttt attttatcga      3120
     ttgcaaatca atataatctt aagtcatcac aatgttaaaa ctgcttttct caatggtacg      3180
     ctgaaggagg aaatatatat gaaagttcct caaggaatta tttgtaatcg tgaaaacgta      3240
     tgcaaattga acaaagccat ttatgggctc aaacaagcag ctagatgctg gtttgaagtt      3300
     tttgagcagg cattaaaaga atgtagattt aaaaattcac ccgttgatcg ttgcatatat      3360
     gttcaagata gaggcgatat caagaaaaat atttatgtct tactatatgt ggatgactta      3420
     gtaatagcaa catcagatat aaaagtatta aacaatttta agcaatacct aatgacaaaa      3480
     tttagaatga ctgacttggg tgaaatacgt tactttattg gaatgaaaat agaaattggc      3540
     caagatcaga tatctttaag ccaatctgcg tatattaaaa aggttttaaa taagtttaat      3600
     atggaagact gcaagtctgt aaatactccg cttccgtcta aactagatta tgaaatgtta      3660
     aatgcagacg acaaatacga tgctccttgt cgaaatttaa ttggtagttt aatgtacata      3720
     atgctttgta cacgtcctga tatagctact gctgtgaata tcctaagtag atatactaat      3780
     aaaaataata tagagctatg gcaatgttta aaaagggtct taaggtatct taaaggaaac      3840
     attgatttga aattaatttt caagaaaaat ataaattacg aacacatatt tgttggctat      3900
     gtcgactcag attggggtgg aaatgaaaat gacagaaaaa gtacatctgg ttaccttttt      3960
     aaaatgttta attcaaattt aatttgttgg aatacaaaga gacagaattc tgtggcagct      4020
     tcatccactg aagcagaata catggcattg tttgaagctg taagagaagc attatggctt      4080
     aagtccctct tagaaagcat ttacattaaa tttgataagc caataaagtt gtttgaagat      4140
     aaccagggat gtataagcat agccagcaat ccgtcttgtc ataagaggtc aaaacatatt      4200
     gatataaagt atcatttttc cagagagcaa atagagaata atattatttc tattgagtat      4260
     attcctacag agaatcagct ggcagacatc ttcacgaaac cattacctcc tggaagattc      4320
     tcgttattaa gaaggcaatt gggactacac caagaagaat aacctcaaca aaagaagaca      4380
     cgatttaatc taatttcgtt aaactgaagt acctatctaa attttaattt gatttatgtt      4440
     aatcgatgag gaaacattga aaaacaaaca aaaataatct aactaagttt agtaattgaa      4500
     gttccttttt aattttaaat tttgtatatc tgatgttatt atattaagta cgtataatga      4560
     tctggttggg ttttatctgg gtttccccaa tccttgcagc aaatgctgga tcatattgta      4620
     acacttccca gaatgcacac tagccacatt agaataagta atgaagtaac tattgaactt      4680
     taagtttggt ttaacgttgt gaaatgttgt ttttgagggg gc                         4722
//
ID   Copia-2_DEl-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-219
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 452-452 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 219 BP; 72 A; 38 C; 29 G; 80 T; 0 other;
     gtattgaata gccctattct attatcaaaa ataatataac acaacactga atttagtatt        60
     ttgatcagac ctataatctg gtcacatttg aatttgcctc tttccttttt tcacgattcc       120
     tgtgcatgtg gcgtgtgtta ttaaaagctc ataaaataat acctaaaata taaaaccaat       180
     ctcatgtgtt atttgtcttg gtgctaaagg attacaaca                              219
//
ID   Copia-2_Deu-I repbase;    DNA;    INV; 3463 BP.
XX
AC   AFPQ01005380;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_Deu_;
KW   Copia-2_Deu-LTR; Copia-2_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-3463
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01005380; Positions    6303    2841.
XX
CC   Positions [1125-1628] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           540..2051
FT                 /product="Copia-2_Deu-I_1p"
FT                 /translation="METRDQLSSFEVLTIKLKEESEGKRSAEERVENTKAF
FT                 AAAQKHNSQTKTCGQKKLKNIVCFKCGEQGHIKSQCRSESEGDHRMASTNV
FT                 VNRQSSLLHACDVNSCKVTFDIENAKVMQDGECIVKAKKIGNLYLLEGGRS
FT                 KCFAMSAVDGILLHKSYGHINFSSMKDMISKGIVQGIDNIRLPENINCKTC
FT                 MVSKIHRAKELLELIHADVCGPFPTLSLGGSKYFLTFIDDKFRRIFVYFLR
FT                 GKNEVLSKFIEFKNLVERQTGRRLKCLRSDNGGEFVNKQFDECLRQHGIDR
FT                 QLTIAYTPQQNGVAERANRTLVEMSRFLLVHAGLGDHFWAEAANTSVYLRN
FT                 RSSTSALESMIPMEAWTGKRPCVKHLKVFGSLAVALDKGPRKGSKFQPKGK
FT                 EYIMVGYSVASKGYRLYDPAARQLVEKRDVLFDERHDVASKGDVVMIDLEE
FT                 LVEQQQGPGGAEIVSDISIDAGSCDQISKRVLKSHAGAPIAPRSFGLENLD
FT                 VQRSSTIS"
XX
SQ   Sequence 3463 BP; 1048 A; 660 C; 906 G; 849 T; 0 other;
     agaggttatg gccccaggca ctagagaatt caagtttatt cggtgttgga ctcgagatta        60
     acaatgagtg ctctttatca aattgataag ttacaggaga cgaactatga cacatggaaa       120
     atacaggtgc gatctgtatt ggtccattcc ggcttgtgga gtgttacgtc tggagagcta       180
     actgaaacaa atgttccaga aggacaagag tttgagagct tggacagcaa ggcgtcggca       240
     acaataacat tgagtgtaaa gacatctcaa ttggcctaca tcaagaattg cttgacggct       300
     gtggaggcat ggaccaagtt gaaggaggtt catcaaccaa gccgacctgt acaaaaagta       360
     cagttataca agaaactgct taataaacgg aacaagggca gagcatgacg acctacataa       420
     gtgaatttgt ggaaattttg gatggtctaa ccggagttgg aatagagcta aacgatgaac       480
     tacgcactat cgttttgcta tagagccttc cagaacaatt tgagcatttc gtggtcgcta       540
     tggagacacg agatcagttg tcgtcgttcg aagttctcac cataaagtta aaggaggaga       600
     gcgaaggaaa acgaagtgca gaagagcgag ttgagaatac taaggcattc gctgcagcac       660
     agaagcacaa ctcacagacg aagacctgtg ggcagaagaa actaaaaaat atcgtttgtt       720
     tcaagtgtgg tgaacaaggg cacattaagt cccagtgtcg cagtgagagc gagggagatc       780
     accggatggc atcaacaaat gtggtgaatc gccaaagcag cctgctgcac gcctgtgacg       840
     tcaacagttg caaggtgacc tttgacattg agaatgccaa ggtgatgcaa gatggagaat       900
     gcatagtgaa agccaaaaag attggcaact tgtacttgct tgaaggtggc cgaagcaaat       960
     gttttgcaat gtcagctgtt gatgggattt tgctgcacaa gagttacggc cacattaatt      1020
     tctctagcat gaaagatatg atatccaaag ggatagttca agggatagat aatattcggt      1080
     tgccagagaa tattaattgc aaaacatgta tggttagcaa aatccatcgg gctaaagagc      1140
     ttttggagct gatacacgca gatgtctgtg gacctttccc aacactgtct ctcggaggtt      1200
     ccaagtattt tctgactttc attgacgata agttcaggag gatttttgtt tactttctgc      1260
     gtgggaagaa cgaggtgcta tccaaattca tcgaatttaa gaatctggtt gaacggcaga      1320
     caggaagaag gcttaaatgc ctgcggagtg ataatggcgg agaatttgtc aataaacagt      1380
     ttgacgaatg tctgaggcag catggaatcg acagacagct aacaatagcg tatactcccc      1440
     agcaaaatgg agttgcggaa cgggccaatc gtacgcttgt ggagatgtcg agattccttc      1500
     tggtccatgc tggactggga gatcattttt gggcagaagc tgccaacact tcggtttatc      1560
     tccgaaaccg ctcgtctaca agcgcattag agagtatgat tcctatggaa gcgtggacgg      1620
     gtaagagacc ttgtgtaaaa catctaaaag tttttggatc tcttgcagtt gctctggaca      1680
     agggtccgag gaagggcagc aaatttcaac ctaagggcaa agagtatatt atggttggat      1740
     actctgtggc atccaaaggc tatcgtctgt atgatccagc agctcgacaa ttggtcgaga      1800
     aacgggatgt tctgtttgat gaacgtcatg acgtggcatc caagggtgat gttgtcatga      1860
     tcgatctgga ggaactggtg gagcagcagc agggacccgg aggtgcagaa atcgtttctg      1920
     acatatccat cgacgccggt agctgcgatc agatcagtaa gagagtgctg aagagccatg      1980
     caggggcccc aatcgcccca agatcattcg gactggaaaa cctggacgtc caaagaagca      2040
     gtacaatatc ctaggcgccc ttgtttcgga aaatgttccg attccgttaa cttacaagta      2100
     tgcggtggag actacaaatg caacggagtg gcgtgaagca atggcaagag aatatgattc      2160
     tctggttgcc aaccagacct ggcagctcac agatttacca aagaatcagc gagcaattgg      2220
     atgcaagtga gtgttcaacg tgaagcgtga tagagatggc caaatagaac gcttcaaggc      2280
     tcgactggta gcaaaaggat gatcgcagca attcggcata aactaccaag aaagattttc      2340
     gccggtatgc cgattggaga gtgtgcgctt tattatagca ctggcggcgg agctcaagct      2400
     acatcttcat gaaatggatg tatgcaccgc gtatcttaac agcgatctga atgaaacggt      2460
     ctacatgaag cagccggagg gatattcaga tgaaacgaat cctgataagg tattgcttct      2520
     gaagaaagca atatatggct tgaagcagtc agaagggcct ggaacgagaa gctgaatggc      2580
     gttttggtta atatgggatt cgttgcctgt gataacgagc catgtttgta caaacattgt      2640
     ggagaaggta atcttggtct tatgttgacg atatacttat agctagccaa tcgcacgagg      2700
     atttgctgaa actcaagagc agcatctcac agtcgttcga gtgctttgac aagggtcagc      2760
     ttaaccattt cctgggcatg gaaatcgaac gagaacgcga tcttggattg cgcaagcgct      2820
     taatgcaaaa aggtggatcc tacgttttat cagtccgtag tacaagagct tatgtggcta      2880
     gctcttacaa caaggcctga catattgcat tcggtgtcaa aattggcaca acggaaccaa      2940
     aacccgcatg ctgaacacat ggctggcata aagcacatct tcagatacct ctcatctagg      3000
     cttgacagaa agtcctatac tggttacatc tacctgttag caggtgttcc gatttcttgg      3060
     cgttcggaga agcagcgaag tgtggcgtta agcagtaccg aggcggagta catggcacta      3120
     tcggcggcat tcaaggaggc gatcgtcatg cgaaggttga ttatagaaat cggctgcgga      3180
     gacaacgaca ccccgatcgt cgtgtatgag gataatctga gtgcgcaggc gttaaccaag      3240
     aatcctgttc atcattccag gacaaagcac atcgatatac gttatcattt tgtaagagaa      3300
     attgtaaagg aagggaaagt tttgttgaaa tacaaacgta aaactgaaat gttagcagat      3360
     attttgacaa agaatcttcc gaagacgaaa cacgaagagt ttacaaaatc attaaatttg      3420
     ttttgattat attttttgta aacaagcttg cattgaggaa ggg                        3463
//
ID   Copia-2_Deu-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   AFPQ01005380;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_Deu_;
KW   Copia-2_Deu-I; Copia-2_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-231
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01005380; Positions    2840    2610.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 231 BP; 69 A; 39 C; 42 G; 81 T; 0 other;
     tgtagaaaat aaagtaccct gtatatttct gtttgttaca atgcacgctt gtacaggtat        60
     tagaaagagt tcttgaagta ctgatatttg tctcgctcta aggaatagag aataagaaaa       120
     aatgtatacc aatcttttgt ttcttcttca acttcaaggt tagtcgtaaa taaaattccg       180
     aagcgtacac acggtgttct ctgatttggc ttctttgaat tctgccgctc a                231
//
ID   Copia-2_DGri-I repbase;    DNA;    INV; 4149 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DGri_;
KW   Copia-2_DGri-LTR; Copia-2_DGri-I.
XX
NM   Copia-2_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4149
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1289-1289 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4116
FT                 /product="Copia-2_DGri-I_1p"
FT                 /translation="MAGAFIKIEPLCAENYGTWKLQVRAILVKNELWQYVD
FT                 GAKICPENVTDQAVWKTYDEKARADILLSISPSELAIIEDCNSAKEYWLKL
FT                 QETFQSKGPVRKASLLKRVALSRMNEGASARQHVNEFFDAVKKLKEIGVAI
FT                 GNDLLVILLLYSLPDSYEMFRCAMEARDDLPHPDVLRVKILEESEARENKE
FT                 NREEQNAMFANRRKDVERNSKERKSDKVQREDRKCFSCGKVGHFARNCRSN
FT                 PKKNMKHNTKEQNSAGTAENGELSLNALEMAFSADEKNGLWCLDSGCTAHM
FT                 SSNKSMFTDIAKVEKTLHLANNKTTRISGIGNAKIAVKKQQQRVDLTLKDV
FT                 FYVSDLRQNLMSVSKITDNGFEVHFRKNEALVMKNNEVWLRAQRYGNLYYL
FT                 NGGEHQVNSAIYGGQNDLDLWHYRMGHLNESDLKNMAKSGKAYGMTMCQNG
FT                 KMSKCEICISEKQTASIYKSGNEKRTTELLEIVHSDVCGPMRTQSLGGCKY
FT                 FATFIDDYSRYCEVHFLKQKSELFEAFKVYKATAENFTGKKIKILQSDNGT
FT                 EYCNKEFDKYMKVNGIQRRITTPHTPQQNGLAERKNRTLVEMARCMMKQSG
FT                 VPPSFWAEAVNAACYIRNRCVTRGLSGEIPHTYWTKKIPTVSHLRIFGTKA
FT                 YTLIKGSNKGKFESRSEECILVGYSNTSKAYRLYLPEKRKVIVSKDVKFLN
FT                 VPGFKSEYAEFYERDRNSNGGFDINITSKPCDESTSDDNSSVERPKQKLVE
FT                 QQRGRGRPKIERTGQRGRPRKIYQPQAQVTSNDEQSSSSXTFEECEIAYMA
FT                 ATDDPTTLKEXKSHKDSVSWTRAIEDEFLAQVHNGTWEIVERPKDRKIIGC
FT                 KMVFRTKDNGTVSGKKKVRLVAKGYAQRPGEDFHETYSPVARFTSVRLLVA
FT                 MAAELDMEIHQMDVVTAYLNGELEESVYMEVPESFNDFMEKLESGKSIGTK
FT                 HDSLRTEYMKTTAEWRASLSSMRSPVCLLKKALYGLRQSGLRWYCRLTTKL
FT                 QEVGLEPTKQDPCLFVKRQGKKILLVSIYVDDLLLASNHPDWLHQTKEILG
FT                 DAFEMKNLGPVTTCLGIEXKQDLKEHCIFLAQEXYIDAILKRFGMTECKSA
FT                 XTPIEAKCTLKRTEAADEAEMRKYPYQNLIGSLMFLSVTTRPDIAYAVNFM
FT                 SQFNSCYNAEHWKTAKRILRYLSGTKKLGLLFKRTGEDLYGVVDADWGANL
FT                 TDRRSYSGQAFILAGAAISWEARKQRTVALSSTESEYLAMSEATKEALYLK
FT                 AILNGIGRRCDSVLLLNDNQSAQKLVKGFGFHPRTKHIDVRHHFIQQKHQS
FT                 GDIQVGYMQTEQMPADVLTKGLSSAKHHGCISSLGVTSI"
XX
SQ   Sequence 4149 BP; 1372 A; 779 C; 1040 G; 953 T; 5 other;
     ggttatgggc ccagtgataa acaaataaga aaacgttgat aataaatagt gtagctgtga        60
     aaaatggctg gtgcatttat taaaattgag ccactgtgtg cggagaacta tggcacgtgg       120
     aaactgcagg tgcgtgctat attagtgaaa aacgaactat ggcaatatgt tgatggagcg       180
     aaaatttgcc cagaaaatgt gacagatcaa gcagtatgga aaacatacga tgaaaaggcg       240
     cgcgcggaca tattattatc gattagccca tcggaattgg ctataattga agattgtaat       300
     tcggcaaaag aatactggtt gaaattgcag gagacatttc aatcaaaggg gcctgtgcga       360
     aaagcaagcc tgctgaaacg agtggcattg tcgcgaatga acgagggcgc tagtgcgcgc       420
     cagcatgtaa atgaattttt cgacgcagtg aaaaaattga aagaaatagg tgtcgcgatt       480
     ggaaatgatt tgttagtaat cttattgcta tatagtttgc ctgactctta tgaaatgttc       540
     agatgtgcga tggaagcacg agatgacttg ccccatcccg atgtgcttcg cgttaaaatt       600
     cttgaagagt cagaagcgcg tgaaaataaa gagaatcgcg aagaacaaaa cgcaatgttc       660
     gctaatcgtc ggaaagatgt agaaagaaat agcaaagaaa gaaaaagcga taaagtgcag       720
     cgtgaagaca gaaaatgttt cagctgcggc aaggttggac atttcgcgcg aaattgtcga       780
     agcaacccaa agaagaatat gaaacacaat acgaaagaac agaacagtgc gggtacagca       840
     gaaaacgggg aactttcgct aaacgcgtta gagatggcct tttctgccga tgagaaaaat       900
     ggcctgtggt gcctcgatag tggttgcacg gcacacatga gttcaaataa gagcatgttc       960
     accgatattg caaaagtcga aaagacttta catttggcca acaataagac cacacggatt      1020
     agtggcattg gtaatgctaa aatcgcagtt aagaaacaac aacagcgtgt tgacttaacg      1080
     ttgaaagatg ttttctacgt atcggatttg cgtcaaaatt tgatgtcggt ttccaaaatc      1140
     acagacaatg gttttgaagt tcattttcgg aaaaatgaag cacttgttat gaaaaataac      1200
     gaagtttggc tgcgtgcgca aagatacggt aacttgtatt acttgaatgg cggagagcat      1260
     caagtgaata gtgcaatata tggtggtcaa aacgaccttg atttatggca ttatagaatg      1320
     ggacatctga atgaaagcga tttgaaaaat atggctaaaa gtggtaaagc ctacggcatg      1380
     acaatgtgcc agaatggaaa aatgtcgaaa tgcgaaatct gcataagcga aaagcaaact      1440
     gcaagcattt ataaaagtgg taacgaaaaa cgtacgacgg aactattgga aatagttcac      1500
     agcgatgtat gcggcccaat gagaacgcaa tccctgggag gatgtaaata cttcgctact      1560
     tttatagatg actattcgcg ctattgtgaa gttcactttc ttaaacagaa atcagagcta      1620
     tttgaagctt ttaaagtata taaagctaca gcagaaaact tcacgggaaa gaagataaaa      1680
     atacttcagt cagataatgg gactgagtat tgcaacaaag agttcgacaa gtatatgaag      1740
     gtgaacggaa tccagagacg cataacaaca ccacacacgc cacagcagaa tggcttagct      1800
     gagagaaaga atcgtaccct ggtcgagatg gcacgctgta tgatgaagca atccggtgtg      1860
     ccgccatcct tttgggcaga agcagtaaat gcagcatgtt acatcagaaa cagatgtgta      1920
     acgcggggcc tatccggcga gattccccat acttactgga cgaagaaaat tcctacagtg      1980
     tcgcatttac gtatatttgg tacgaaggca tatacattaa taaagggttc aaataagggt      2040
     aaatttgaat caagatcgga agaatgcata ctggtcggct actcaaatac atcgaaggca      2100
     tatcgattat atttacctga gaagcgtaag gtaatagtaa gcaaagatgt caagttcttg      2160
     aatgtcccag gttttaaaag tgagtacgct gagttctacg aacgtgatcg aaactcaaac      2220
     ggaggtttcg acatcaatat cacgagtaaa ccttgtgatg agtctaccag cgacgataac      2280
     agttcagttg agcgacccaa gcagaagcta gttgagcagc agcgtggcag agggcgtccc      2340
     aagatcgaaa ggacaggcca gcgtggtagg ccacggaaaa tatatcaacc acaagctcag      2400
     gtgaccagca acgacgagca gagcagctca agcgasacat tcgaggaatg cgaaattgca      2460
     tacatggctg cgacagatga tccaactaca ctgaaagagg mgaaaagcca caaggacagc      2520
     gtcagttgga caagagcaat tgaagatgag tttctggcac aggtacacaa cggaacatgg      2580
     gagatagtgg aacgccctaa ggatcgaaag attataggtt gcaaaatggt gtttcggaca      2640
     aaagacaatg gtaccgtttc aggaaaaaag aaagttcgat tggtcgctaa aggatatgca      2700
     caaaggcctg gagaggattt tcatgaaaca tattcacctg tagcacgatt cacatcagtc      2760
     cgacttttgg tggccatggc agcggaactt gatatggaga tacatcaaat ggacgtggtc      2820
     acagcctacc taaacggcga gctcgaagag agcgtttata tggaggtgcc agagagcttc      2880
     aatgatttca tggaaaagtt ggaatcgggc aaatcaattg gaacaaagca tgattcactt      2940
     cgaacagagt acatgaagac aacagcggaa tggcgtgcgt cgctgtcatc aatgagaagc      3000
     cctgtgtgtt tgttgaagaa ggcgttatac ggattacgcc agtctggttt gcgttggtat      3060
     tgtagactca cgacgaagct acaagaagtt ggattagagc ccacgaagca ggatccatgt      3120
     ttgttcgtca aacggcaggg gaagaagatt ctcctagtat ccatttacgt agacgatttg      3180
     ctattggcgt caaatcatcc ggattggttg catcagacca aagaaatcct cggagacgca      3240
     tttgagatga aaaatctcgg cccagtgaca acctgtctgg gcatagaatk caagcaggat      3300
     ctgaaagagc attgcatatt ccttgcacag gaaawgtaca tcgacgctat attgaaaaga      3360
     ttcgggatga ctgaatgcaa gtcggcawta acacccatag aagcgaaatg tactttgaag      3420
     cgaacagaag cagccgatga agccgaaatg aggaagtacc cctatcagaa cttaattggc      3480
     tctcttatgt ttctttcagt tacaacccgt ccagatatag cgtacgccgt aaatttcatg      3540
     agtcagttta actcatgtta taacgctgaa cactggaaga cggcgaagcg catccttcgg      3600
     tacctaagcg gtaccaaaaa actcggcctg ttattcaagc gaacaggcga agatctgtac      3660
     ggagtcgtcg atgctgactg gggcgcaaat ttgaccgaca gacggtcata ttctggacag      3720
     gcgtttatat tagcaggtgc tgctataagt tgggaggcac gaaaacaacg caccgtcgct      3780
     ttgtcaagca cagagtccga atacttggca atgagcgaag caacaaagga ggccttatac      3840
     ttgaaggcca tactcaacgg gattggcaga agatgtgatt cggttctgct ccttaacgac      3900
     aaccaaagcg ctcaaaaatt ggttaaaggc tttggttttc atccacgcac aaaacacatc      3960
     gatgtgcgcc accatttcat ccagcagaag caccagagtg gcgacatcca ggttggctac      4020
     atgcagacgg agcaaatgcc agcagatgta ctaacgaagg gtctaagcag tgccaagcat      4080
     catggttgca tctcttcgtt gggcgtcact agtatttaag gttaacagaa ttgttacttt      4140
     gagagggcg                                                              4149
//
ID   Copia-2_DGri-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DGri_;
KW   Copia-2_DGri-I; Copia-2_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-204
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1290-1290 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 204 BP; 58 A; 44 C; 31 G; 70 T; 1 other;
     tgttgcaaat aagattcgaa tgattgcaat gtaacaatct ggcaaccctc gtttagctta        60
     tcctaagttt tgcattgtcc gtttattcgc atatactaaa aaattaatct ctcaatactt       120
     ctgtacacac tccgtttttg actgccgaat gcgtcgcgtc attaaatcaa taaagtctgg       180
     ttsctgctaa tcgtcgatct aaca                                              204
//
ID   Copia-2_DKi-I repbase;    DNA;    INV; 3699 BP.
XX
AC   .
XX
DT   25-JUL-2011 (Rel. 17.07, Created)
DT   25-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DKi_;
KW   Copia-2_DKi-LTR; Copia-2_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3699
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1303-1303 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1469-1963] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           863..2917
FT                 /product="Copia-2_DKi-I_1p"
FT                 /translation="MSAYIGKSGTGDNSWILDSGASSHMCRERSYFETLRE
FT                 SNDSITMASGDKVKAQGVGDVKIESQFCSDILLREVLFVPELNHNFVSVGK
FT                 IISYGHSVKFTNKMACVINDENEKLFTAKLDAGIFMARVSSKCKQKIYSVQ
FT                 AEEKSKFEIWHGRFGHLNQRDLREISSKSIVRGLELKSSRDFDCVTCGTCK
FT                 ITRKPFDRFDGIYTKSKLELIHTDICGPMRVASISGAIYVITFIDDYTRYV
FT                 WTYFLRRKSEALNVAFVAQTELQTGGKVKRMRSDNGLKYVNAEFREFLRDK
FT                 RIIHQTTASYTSQQNGVAERANRTLVEMARCMLEAATQPQFLWAEAINTAT
FT                 YVRNRTITKKLDDKTPYERWFNRKPSVRHFRTFGCDSISLNKKPGKGKFET
FT                 NGLKLIFVGYSEQSKAYRLYDVRKRCIVVSRDVIFLEQSFSIGRNNAESGQ
FT                 GNRSGSSYFFDGDICTDGAAGISMESPPDGSMQEEAIPQEDGIPQDDGIFQ
FT                 EDADQKEDQDLEEESEDEVASPRPRKRGRPRILRTGRPCRPRKVFVVEPTV
FT                 NLLEVNIADPNTVSEALESTYRNEWRKAMSIEYKNLLKNGTWDLVDPSKNH
FT                 NVLGCKWVLSTKRNADGSIEKHKARLVAQGCGQRRNIDIVAAYLNGSLQED
FT                 VYMRQPEAFIDEARPNAICKLYVYPEFVSRMADGPV"
XX
SQ   Sequence 3699 BP; 1216 A; 623 C; 957 G; 892 T; 11 other;
     aaggttatgg gcccagatcg tgttaactag gaacctaatt aaatcgagaa gtacgtcggc        60
     acggtaccct gatttgcggt agtgttttta attcggtaga gaaagagcgt agtcaaagaa       120
     acggaaaaat gaatccgagt atgaattcga tcgaaagact ggacgatgaa aattacagcg       180
     cgtgggctgt acaaatgaaa agcgttttgg tatacgcaga tttgtgggca gtggtttgcc       240
     gtcgtttgga aaaacgaaga tgacagtcaa gaagtaaagg ctgcgtttga tgtgaaagac       300
     gagaaagctc ttgcgagtat tatgttgcgc ataaaaccgt ctcaaataaa ccatgtgaaa       360
     cattgtgtta gttcagcaga agcatgggag aagcttctag caatacatag gccaacaggg       420
     ccggcgaggc gtgttaktct acttcggcag ttgcaaagct tcgaatkaaa atggcagaat       480
     gagagaatgt cggagcgcaa taaacaagtt ttttcggacg ttctggagaa actcaacgaa       540
     gtcggtgtaa agctgcccga agaagtaacc gttattttgt tgctgtctgg cctaagtgac       600
     gacatgaaaa ttttatcgtt gcatggaatg cagagatcag ctgcctaccc taagtcagct       660
     gatggtcaaa atattggaag aggaatcacg aagagatgat agagagactg gaaatmctag       720
     cggaactgag caagtgttct cggcgaaggg cgcaaagaag acaacggatt gcgatcgaag       780
     gcaaaagaca aagtgttttg catgcggtaa gcgtggtcac ataaaagctc aatgcagaaa       840
     agagagagag gcaaacgcag caatgagtgc gtatattgga aaatcgggaa ctggcgacaa       900
     cagttggatt ttggacagtg gagcttcatc tcatatgtgc agagagagat catatttcga       960
     aactctaaga gagagtaatg atagcattac aatggcatca ggcgataaag ttaaagcaca      1020
     aggcgtagga gacgtaaaaa tagaatcaca attttgcagt gacatcttgc tacgcgaagt      1080
     attatttgtt ccggaattga accacaattt tgtatctgtt ggtaaaataa ttagttatgg      1140
     tcactcagta aaatttacaa ataaaatggc ttgtgttatt aacgacgaaa atgagaaatt      1200
     gtttacggcg aagttggatg ccggtatttt catggccaga gtgtcgagca aatgtaaaca      1260
     aaagatttac agtgtgcagg cagaggaaaa gtcaaaattt gaaatttggc acggcagatt      1320
     tggacacctg aaccagagag atttacgaga aatttcaagc aagagtatag ttcgcggatt      1380
     ggaattaaaa agttcaagag attttgattg tgtaacatgt ggaacatgta agataacgag      1440
     gaaaccattc gatcggttcg atgggatata cacaaagagc aaactggaac taatacatac      1500
     ggatatttgc ggccccatgc gtgtggcttc tatatctggt gcgatctatg taataacgtt      1560
     tatcgatgat tatacaagat atgtttggac atattttttg cgaaggaagt cggaggcgtt      1620
     aaatgtggcc tttgtggcac agacggagct gcaaacggga ggcaaggtaa aacgtatgcg      1680
     tagcgataac ggtttgaagt acgttaatgc ggagtttagg gaatttcttc gagataagag      1740
     aattatacac caaactactg caagttatac atcccagcag aacggagtag ctgaaagggc      1800
     caaccgaact ttagtcgaga tggcgaggtg tatgctggaa gcggcgactc agccacaatt      1860
     tctgtgggct gaggcaataa atacggccac ttatgtacgg aatcggacga ttaccaagaa      1920
     gctggatgac aagactccat atgaacgttg gttcaatcgg aagccaagtg tcaggcattt      1980
     cagaacgttt gggtgcgata gtatcagcct aaacaagaag ccaggtaaag gaaagtttga      2040
     aacaaatggt ctaaaactta tttttgtagg atactcagag caatccaagg cgtacaggct      2100
     ctacgatgtc cgcaaaagat gtatcgttgt gtccagagat gttattttcc tggagcagtc      2160
     gttttccatt ggtcgaaata atgcagagag cggacaagga aataggtctg gcagttcata      2220
     tttcttcgat ggagacatat gtacagatgg cgcggcagga atcagtatgg agagtccgcc      2280
     ggatggcagt atgcaggaag aagcaattcc gcaggaagat ggcattccgc aggacgatgg      2340
     catttttcag gaagatgcag atcaaaagga ggatcaggat ttagaggagg agagcgaaga      2400
     tgaagtcgca tcaccaagac caaggaaacg gggacgtcct agaatcctac gcacaggtag      2460
     gccatgcagg ccacgaaaag tatttgttgt ggaacccacg gtaaacttat tagaagtaaa      2520
     tattgctgat ccaaatacag tgtcagaggc actggagagc acgtatagaa acgaatggcg      2580
     aaaggcaatg agtatcgagt ataaaaatct tctaaaaaac ggaacatggg atctagtgga      2640
     cccaagtaag aatcataatg ttttgggatg taaatgggtt ctttccacaa aacgaaatgc      2700
     tgatggaagt attgaaaagc ataaagctcg actcgtagcg caaggctgtg gtcagaggag      2760
     aaacattgat atcgtggcgg cgtatttaaa cggaagtcta caagaagacg tatatatgcg      2820
     acagccggag gcattcatcg atgaggcaag accgaatgct atatgtaagc tatatgtata      2880
     cccagaattt gttagcagaa tggcagatgg accagtgtaa ggcggcaccc acaccgtttg      2940
     cgatgggaac tacattgaat aaatgcacgg acgagaattg cagtcagaaa caaaatatta      3000
     ccgaatatca gtcgttaatt ggagctctaa actatttgtc tatggtatcg aggccagaca      3060
     ttactcacac agtatcgaaa ttgtcacagt acaataacca cccacataag gaacaattta      3120
     tagctgcaaa acgagtacta cgatatttgc aaggcgttcc aaaaggtata actaaatatc      3180
     gtaataattt taaaaatctt gtttgttata cagatgcgga ctggggatca gaatcagctg      3240
     atcgtaagtc atacagcgac tacatactca tggtagcagg agccccagtg gcttgggaaa      3300
     ctaaaaagca gagcgtcgtg gcccttagtt cgatggaggc cgagtacatt gctatgtgtc      3360
     aggggactaa ggagattgcc tttcaacgaa gtattctgaa ttaaatgggt tttctggatc      3420
     ttgtcagaga agcaactact ttgaggtccg acaaccaagc ggcgattgcc attgctagca      3480
     atccaatggt gcataagcgm agcaagcacg tmgatattmg gttccaccac gtmmgagaac      3540
     awktcgaaaa waaggagacc acagatttga gatatgtatc aacagaaaac atgatggcag      3600
     atgtgttaac taagaatttg agcaaagtta agcacttgaa atgtattaat atgatgggtt      3660
     tgtatttttg aatttataca tccgagttga gccggagtt                             3699
//
ID   Copia-2_DKi-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   25-JUL-2011 (Rel. 17.07, Created)
DT   25-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DKi_;
KW   Copia-2_DKi-I; Copia-2_DKi-LTR.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-186
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1304-1304 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 186 BP; 52 A; 38 C; 29 G; 67 T; 0 other;
     tgttggaaca ttgccatgtt tagctttata tcaactagaa tgtataacag ctgatagagc        60
     tttttcatat tacccttctg taatagttct aagctttact tgattcacta cattaaatga       120
     ctctaacctg aatagacgtt ggtccattat ttcggtctcc ggtaactaca cgcggtaact       180
     cttaca                                                                  186
//
ID   Copia-2_DMel-I repbase;    DNA;    INV; 4192 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 25.03, Created)
DT   13-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4192
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 742-742 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(156..356,317..1534)
FT                 /product="Copia-2_DMel-I_1p"
FT                 /translation="MXNAYTKKVWLYTHKCKSSKATKSDSKKXKANGETKK
FT                 KIIRTVSFIIATTRGHKSKKKKTWIKERGIVKKKKDMDKGKRNIKPFNGEK
FT                 YSIWKFRVRALLEENDLLNVIEKEQTEVSEEVKRAERNXKGIIIEYLSDSF
FT                 LSFANSGNSAKQIFEKXDTIYERKSLASQLSLXKQLFSLKLKGDTLLANHF
FT                 HLFDDLMTELVAAGAKXDEMDKIAHLXNTLSTNYEGVITAIETLTESNLTL
FT                 DFVKTRLLDHEIKLKGINKDTSAKVLQAIGNRESRENTYKNKAMKFMKKPF
FT                 KNKSKLKCFHCKKLGHIKKDCFLLKRQAGNQNVPDGNNVREGQAQMATETQ
FT                 PERAFAFLMNAEVXERQTQKVETQQKCAFAFMVKLVNYTEKPDEVNFILDS
FT                 GASDHLVNNINLFSEYENLNLNVAIEIEKRGEFVYATAKXQVKLNNSGSNI
FT                 TLHNVLYCKEIPHXLLSVKKMIDAGPRE"
FT   CDS           join(1518..1721,1725..2069,2121..2546,2550..2786,
FT                 2936..3148,3126..3896)
FT                 /product="Copia-2_DMel-I_2p"
FT                 /translation="MLGRGNKDGIKVIKNVNLVFEGVCEYNVPTVKFTLNS
FT                 KVYTSAISNDAEYRLWHERLGHISVGKYNISKLNDMACIEDRIYIKNVQVN
FT                 SSKLCEACINGKQSRLKFENTKIKENIERPLFVIHSDVCGPITPSTIDNKN
FT                 YYVVFIDQYTHYCVTYLITYKSDVFFVFKDFVAKSEAHFNLKIGILCRKRY
FT                 QLSFNLTVPHTPQLNGVAERMIRTITEKARSMINCTKLNKSFWGEAVLTAT
FT                 YLINRSPSRALKNIRKTPFEMWHKKKPVLKYLKIFGSTVYALNKVRKRKFD
FT                 EKSIKTILVGYEPNGYKLWNENSRKFMTARDVVRVWSEINMKSVTSNENDS
FT                 VEKHDVFDQYSDSLIEENEESNFPLQENCESTDSKSDENPNENSTCLENTD
FT                 PVAETGDKKKRQNLADIIISTSDSERMSKFKTYLLNKFQMTDLNEIRYFIG
FT                 IKIERKNDQICLSQSAYIKNVLKKIQYGRLKKFNMEDCNPVGTPLPSKINY
FT                 XALXVEESYEAPCRNLIGCLMYVMLCTRPDLSTSISILSRYTNYNNRELWQ
FT                 CLKRILRYLKGTVNLKLSFKRNLKVNKILMGYVDSDWAGNETDRRSTTGYI
FT                 FKMFENCSICWSTMKQKSVAASSTEAEYMALFEGVREALWLKSLTNEMKLE
FT                 LNGPIVIFEDNQGCISIANNPTCHKRTKHIDIKYHFTREQIENKLICVKYL
FT                 STDLQLADILTKPLPTARFTALRDQLGLTESE"
XX
SQ   Sequence 4192 BP; 1619 A; 567 C; 794 G; 1196 T; 16 other;
     ggttatgggc ccagtcacat tttcgaccag gtggtgaaat attttaattg tgcaaataag        60
     aataattaaa ataaataaaa gtgaattttc ttatttaaat atatgtattt attgaataca       120
     aatacatatc ggctttgcga aatacataca tatgtatgtw caacgcatac acaaaaaagg       180
     tttggttgta tacacataag tgtaaaagca gtaaagcaac gaaaagtgat tctaagaags       240
     gcaaggcaaa cggagaaaca aagaagaaaa taataagaac agttagtttt atcatcgcaa       300
     cgacgcgtgg tcataagtca aaaaaaaaaa agacatggat aaaggaaaga ggaatataaa       360
     gccgtttaac ggtgaaaaat attcaatttg gaagttccga gtaagggcac tgttagagga       420
     aaacgatttg ttaaatgtaa ttgagaaaga gcaaacagaa gtaagcgagg aagtaaaacg       480
     ggcagaaaga aatkcaaagg ggatcataat agaatatttg agtgattctt ttttaagttt       540
     tgccaacagt ggaaattcgg caaagcagat ttttgaaaaa ttkgatacta tttatgagcg       600
     taaaagcttg gcatctcaac tgtcactamg caagcaatta ttctctttaa aactaaaagg       660
     tgatactctg ctagcaaacc attttcattt atttgatgat ttgatgactg agttagttgc       720
     ggctggagcc aagktggacg aaatggacaa aattgcwcac ctamttaata cactttcgac       780
     taactatgaa ggagtaataa cagctataga aactcttact gagagcaatt tgacattaga       840
     ctttgttaag acacggctac tcgatcatga aataaagtta aaaggaatta acaaagacac       900
     aagtgctaaa gtkctgcaag ctataggcaa tcgagagtct agggaaaata catacaaaaa       960
     caaagctatg aaatttatga agaaaccttt taagaataag tccaaactaa aatgttttca      1020
     ttgcaagaaa ttggggcata taaagaaaga ttgctttcta ttaaaaaggc aggcaggaaa      1080
     ccagaatgtt cccgatggaa ataatgttag agagggacag gctcagatgg cgacagaaac      1140
     acagccagaa cgtgcgtttg catttctgat gaatgcagaa gttagmgaaa gacagactca      1200
     gaaggtagaa acccagcaaa agtgcgcatt tgcatttatg gtgaaattag taaattacac      1260
     tgaaaagcca gacgaagtaa attttatatt agattcgggg gcatcagatc acctagtgaa      1320
     taatattaat ttattttctg agtatgaaaa tttaaattta aacgtggcta ttgagattga      1380
     aaagcgtgga gaattcgttt atgctactgc aaaagkwcaa gttaaactta acaattctgg      1440
     aagcaacatt acattacaca acgtgttgta ttgtaaggaa atcccgcaca wtttgctatc      1500
     cgtaaagaag atgatagatg ctgggccgcg ggaataagga tggaattaaa gtaatcaaga      1560
     acgttaactt ggtatttgaa ggagtatgtg agtataatgt accgactgta aaatttactt      1620
     taaatagtaa agtatataca tctgcaatat caaatgatgc agagtatcgc ttgtggcatg      1680
     agaggttggg acatataagt gttggaaaat ataatatatc ttagaaatta aacgatatgg      1740
     cttgtattga agatagaata tatataaaaa acgtacaagt aaatagtagt aaattatgtg      1800
     aggcgtgtat taacggaaag caatcaagac taaaatttga aaacacaaaa attaaagaaa      1860
     atattgaacg cccactattt gtaattcatt cggatgtatg cggtccgatt acgccctcaa      1920
     ctattgataa taaaaactac tatgtagtat ttattgatca atatacacat tattgtgtga      1980
     cgtatttaat aacttataaa tcggacgtgt tctttgtatt taaagatttt gtagcaaaga      2040
     gtgaggctca tttcaattta aaaattggtt aatctatata tcgataatgg aagagaatat      2100
     ctctctaatg aaatgcgtga attttgtgtc gaaaaaggta tcagctatca tttaatttaa      2160
     cggttcctca taccccacaa ctaaatggtg ttgcagagcg gatgatcaga acaatcactg      2220
     aaaaagctcg ctctatgata aactgtacta aactaaataa aagtttttgg ggtgaagctg      2280
     ttttgacagc aacatattta attaacaggt ccccaagtag agctttaaaa aatataagaa      2340
     aaacaccatt tgagatgtgg cataaaaaga agccagtatt gaaatatcta aagatatttg      2400
     gctcgacagt atatgcacta aataaagtgc gaaagcgaaa atttgacgag aaatcgatca      2460
     aaactatact tgtcggatat gagccaaatg gctataagtt gtggaatgag aactcgagaa      2520
     aatttatgac agctagagat gtagtgtgaa gagtgtggag tgaaataaac atgaaatcgg      2580
     tgacttcaaa tgaaaatgac tctgtggaaa aacatgatgt ttttgaccaa tacagtgatt      2640
     ctctaattga agagaatgaa gagtcgaatt ttccattgca ggaaaattgt gaatctacgg      2700
     attcgaagtc tgatgaaaat ccaaatgaaa attccacttg tctcgagaat accgatccag      2760
     tggctgaaac tggtgataaa aaaaaataaa ataaaaatca agaacaaatt agacgcagtg      2820
     agagaattaa agataaacca aagttatcat atagatttta agaaaagtgt ctgatgaata      2880
     cccaaatgtg tttaaatgat atacccaata cctatgaaga gattaaaact cgtgaaggca      2940
     gaaccttgct gatataataa tttctactag tgattccgaa agaatgtcta aatttaaaac      3000
     atatcttttg aataagtttc aaatgaccga tctaaatgaa atacgatatt ttattggcat      3060
     aaaaattgaa agaaaaaatg atcaaatttg tctcagtcaa tctgcatata ttaaaaatgt      3120
     tttaaaaaaa attcaatatg gaagattgta atccagttgg kactcctctt ccaagcaaaa      3180
     taaattatsa ggctctgmaa gtagaagagt catatgaagc accatgtagg aatttgattg      3240
     gttgtttaat gtacgttatg ttatgtacac gaccggattt aagtacatcg ataagtatct      3300
     taagtcgata tactaactac aataatagag aattatggca atgtcttaaa agaattttaa      3360
     gatatctaaa gggaactgtc aatttaaagt tatcatttaa aaggaatttg aaagtaaata      3420
     aaattcttat ggggtatgtt gattctgatt gggccggaaa tgagaccgac agaagaagta      3480
     ctacagggta tatatttaaa atgtttgaaa attgttcaat ttgctggagt actatgaaac      3540
     aaaaatctgt tgctgcttca tctaccgaag ctgaatatat ggccctattc gaaggagtaa      3600
     gggaagcatt atggctaaaa tcattaacaa atgaaatgaa attagaatta aatggtccaa      3660
     tagttatttt cgaggataac caaggttgta taagtatagc caataatccc acttgccaca      3720
     agagaactaa gcacatagat atcaaatatc attttaccag agaacaaatt gaaaacaaac      3780
     taatttgtgt taagtatctt tccacagatt tacaattggc tgatattttg acaaagccac      3840
     taccaactgc caggttcact gcactgcgag accaactggg gctaaccgaa tctgaatgag      3900
     caaaatgaat ttttatatga agtttgaatc ttttatatat atataaccat aatcaaacca      3960
     aaacaattac tagtctaact attactatgt ttatttaagt gaatcttgtt aaatttttat      4020
     ttgattgaac taattcccca attctttgca caaatgcggt tcaataagag tagccccaga      4080
     gaaaaaaaag gaaaagaata agaatacaac cacgcgcact cgtctgaaag taatttttaa      4140
     tttaattgaa tttttaatca atttgtatca gtgtgatttt tgaggtggcg ta              4192
//
ID   Copia-2_DMel-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 25.03, Created)
DT   13-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-308
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 736-736 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 308 BP; 94 A; 44 C; 67 G; 102 T; 1 other;
     tgttgaaaat acaaaagtca cacttatgca gagatgcgtg tatgtggaga gtgatgagat        60
     tgggaggatc atgtaagaga gaacgcgctc tattattgtt ctcttkgtac tctgtcatcg       120
     ttgcctctca catgcatgtt agagagtaat cgtgccattc gcttgcagac aacgagagag       180
     tgcagttcta tcggttgctt aaataaaatt attattgaat agttagaaca atgaaagtgt       240
     ttcactattt ggttgatggg ctggcttata atatacatac ttaaacgtat tatattatat       300
     taaattca                                                                308
//
ID   Copia-2_DMo-I repbase;    DNA;    INV; 4088 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4088
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4088 BP; 1521 A; 657 C; 849 G; 1061 T; 0 other;
     ggttatgggc ccaggtcgct gaaacagatt attaaaagta tacagttgct aatgtggtgt        60
     gtccagctaa ttcttattgt gtgtcaataa attagtacaa aaatggcaaa taataatatg       120
     tactcaatcg acaagttaga cgaaaaaaac tatgacgttt ggtgtgtcca gatgcgtagt       180
     gttctggctc attccgaagt atggaaaatt acaagtggtg tggaattaaa accagaagag       240
     gacaacggta attggataaa gaaagacgaa aaagcgttag catcaattac attgtcagtg       300
     aaaccaaatc aattaaatta cataaaaaat tgccaaacat cggcagaagc atggcaaaga       360
     ctaaaagaaa ttcatgaacc aagtggaccg gcgcgtaaag tgtctttata taaaacattg       420
     ttaggtctcc gtttgtcgga aggcgcaaat gtagttctat atgtgaacga gtttgaaagt       480
     gtaatagaca aattaaaaga agtcggagtt tcattaggtg atgaaattat tgtcattatt       540
     ttgttgtcta gtttgccaaa atcctacgag aattttgtaa ttgcaatgga aattcgcgat       600
     gagctgccga atttcaccat aatgcgcaat aaactattag aagaggcaga tcgcagaaat       660
     caaacgaaaa gcgaatgcag tgaacagcaa gcatacatga taaagaacaa gacaaaccgc       720
     gataaagaag gaaaacgaaa caacaacgac ggtaaatgct ttgtgtgtgg caagcgcgga       780
     cattatgcag cgagttgtcg gcaaaataaa tttaaagaca aacaacggaa agaagaggag       840
     acaataaagc aagaaaaacg aaataaaaac gaacaatcgt ttgtgtgtgt gtcaccgaat       900
     attgctcttt tttcatcgaa tcaaagtgtg aattgtgacg tatggtgcgt agacagtggc       960
     gcagcctctc acatgtgtaa caatcgcgcg ctatttcacc aatacacaga aatacacgaa      1020
     aaggtgttag ttgcaggaga tcaatcgtta aacgcaatag gcatcggtac agtgcatatt      1080
     aaaaccaaaa attcaagttt caacctaaaa aatgttctgc atgtaccaga cttacaagtt      1140
     aattttttct cagttggaaa aggtacggaa aacggtttac aaataaactt caatagtaaa      1200
     agtgcgatag taaaaataaa aaccgataac gaattgattg ctattgcaaa aagagacaaa      1260
     gggtttatat tattttgaaa atatagtcga gtgcgttaat atgacgtgtg tcgaaaacgt      1320
     aatcaaatgg cacaacagat tcggtcatct gaatatacaa agtttacaca gacttgcatc      1380
     gaatgaaatg gtacaaggca tagataaaat acaaccaata tcgaacatta cgtgtgtgtc      1440
     atgtatgaaa agtaaaatct gttctcaacc gttcaatgaa gcagattatc gagcaaagaa      1500
     cttattagaa attgtacact cagatgtttg cgggcctttt aacacaaatt cgattggtgg      1560
     ttcaaaatat ttcttgacat ttatcgacga taaatctaga tatgctacgg tcatatttat      1620
     gcaaaataaa agtgaagttt ttgaacattt taaaaaatac aaacaatacg ttgagaaaca      1680
     aacaggcgct aaaataaaag taattagaag tgacaatggt ggtgaatacg taaataaaga      1740
     gtttgaccaa tacttacaga gtcaaggcat agaacggcaa cttacagtac cccacacgcc      1800
     ccaacaaaat ggtgtggccg aacgttttaa tagaacactg gtagaaatgg cacgttctat      1860
     gttattgcac gcaggtctcg aagaaaagtt ttgggctgaa gcatgtgcat gtgctcttta      1920
     tatacggaat cgttctacaa caagagcctt agaagatgca accccttttg aaatctggtt      1980
     tcaaaggaaa cctacagtta agcatttcag aacatttggt tgtttagcag ttggcctgga      2040
     taagacgcaa aaacagaagt ttagagctaa aggaagagaa tatatctttg ttggttatag      2100
     tacggcaacg aaaggttaca ggttatatga tatagatcag cacaaggtgg ttatcaagcg      2160
     agatgtaaaa ttccaagagt ggatgtttat ggaaaacaaa aatagagctg atttttctga      2220
     catgatctac aaaaataatt gtcaagctga taaagaatcg caaaacgtaa gtgcagataa      2280
     aacaatcaat actaattgtt ctgcaagtcc tcagatagat tacgaagatg ctgaagcgga      2340
     acctaatcac atggaaaata taccggaatc cagcaatgac gaggagcaat tgcctagata      2400
     tggtccaggt agaccacgca tcgtccgaac aggtgcaccc ggcagaccgg caaagcagaa      2460
     aaacagactc aatgtgatac agacaacaga agaggttaaa gttcctgaaa acgttacagc      2520
     agctattaat gatacgcatt cgagcaaatg gaaggaagct atgcagctgg agttcaactc      2580
     gctcgtggct aacaatactt ggtctttggt agatttacca gctaataaga aaactatcgg      2640
     aaacaaatgg gtttttagct tgaagagaga tgcagaagga aacattgaac gatacaaagc      2700
     aagactcgtc gcaaaaggtt gcagtcaaca gtatggagtt aattatgaag aaacttactc      2760
     acccgtcgta cgttatgcaa caatacgtat ggtttttgca cttgcagccg agcttcaatt      2820
     atacatgcac caaatggata tatgcacagc atatttaaac ggcgaattaa gcgacgaaat      2880
     gtatatggtt caaccggaga tgtttatcaa taaaggcatc ccaataaagt agcaaaacta      2940
     aataaagcta tttacggatt gaaacaatct ggtcgagagt ggaacgtcaa actggataat      3000
     gcattgaaga aatttgggtt catttcatgc agtagcgagc cttgtttata cacgaaactg      3060
     atggacaaca atataaacat cattgcagtt tacgtcgatg atatattaat tgcaagtaaa      3120
     aacaaagcgg acttggaagc tatcaaacaa tatatcggaa aacagttcag atctgtagac      3180
     aaaggcgaag tcaacaattt tctgggtttt tcgatagagc gtactgaaga gactggagat      3240
     gtgtttgtgt gtcaaacaaa ttatattgat aaattactca atcagtacaa tatgcaaagc      3300
     tgtaagtcag ccgctacacc gttggatgcg ggatatcaaa ttaatccatc cgacgaatct      3360
     aagaaagtta atgctacaaa ataccagact ttaattggaa gtttgatgta tttggcaata      3420
     tctacacgcc cggacatatt gcattcagta tgcaaattgt cacagatgaa caaaaatcca      3480
     aatagcactc atgaggcagg agctaaacat atattacgat acctatctag cacaaagaat      3540
     atgaaactac attactacaa aactggcaaa tcaatagaag gctatacaga tgcagattgg      3600
     ggtggtaaca taattgatcg caaatctttt acaggtttca tcttcttctt ggcaggagca      3660
     gctttttctt gggaatcaca taaacaaaca actgtggcat taagcagcac tgaagccgag      3720
     tatatggcgt tggcagcagc agcaaaagag gcggtgtatc taagacgact tgttaatgaa      3780
     attggatgtt tttctacaga tcttccaata tgtgtctatg gtgataattt aagtgcacaa      3840
     caactagcca aaaatcatat gtatcatgca agaagcaagc atatcgacat aagataccat      3900
     tttataagag agttagtaga aactaaagaa attgttttaa aatacattga tacatctaat      3960
     atgatagcag atatttgtac taagaattta agtaaacaaa aacatgtaaa gttgttaggc      4020
     atgacaggtt tgaaaatatt gaaaaattga catgtaattt gaagaaaagt ttttgtgttg      4080
     agaagagg                                                               4088
//
ID   Copia-2_DMo-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-220
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 220 BP; 78 A; 33 C; 37 G; 72 T; 0 other;
     tgttgaaaat ctatcgatat taagtattgg caacactaaa aactataatg ccgattattg        60
     agatgtctgg caaccttaca cttatatata agcgagagtt gagttttagc acgcgtaacg       120
     gagtgtcgcg catacatatt atttttctat gaataaacgt taatataatt acaaacatat       180
     ctactgtaaa cttttagtat gggcagtgaa atttacaaca                             220
//
ID   Copia-2_DPer-I repbase;    DNA;    INV; 4008 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DPer_;
KW   Copia-2_DPer-LTR; Copia-2_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4008
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1489-1489 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1398-1928] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..3965
FT                 /product="Copia-2_DPer-I_1p"
FT                 /translation="MSGMYQIDKLEEGNYDSWCIQMRSVLVHAELWSVASG
FT                 DLLPTNVPEGVNWQAKDEKALAMITLSVKTSQLGYIKNCSKSSEAWNKLKS
FT                 VHQPSGPVRKVQLYKKLLSKRMDQRQSISSYINEFVDILDGLGSVGIELND
FT                 ELRSIVLLSSLPEQFENFVVAIETRDSLPTFDVLCVKLKEEGERKGNTEDQ
FT                 KEYAKAYTAVHKPAAHRAQKKRNNTMICFKCGERGHMKAQCKKESANVERA
FT                 ARVENKQCSLLNALDADNLKKSMWCLDSGATSHMCCEKQLFTKFEKHTEMI
FT                 GLADSGFLKAEGKGEVELKTEICTLLLKNVLYVPEMNGNYFSVSSAVQNKC
FT                 FVTFGQEYARVIQNGECIVKANRVGNLYMFRGKQNNCFAAVKADGALWHKR
FT                 YGHLNISSMKDLISKGMVRGIENMVFPANMNCKTCMVSKIHAQPFPVATTS
FT                 RAQDILELVHADVCGPFGTQSLAGSKYFLTFIDDKSRRIFVYFLRTKDEVF
FT                 QKFVEFKTLVERQTGKSLKCIRSDNGGEFVNKSFDEFLKTNGIERQLTVAY
FT                 TPQQNGVAERANRTLVEMSRCMLVQSGLGESLWAEAVNAAVYVRNRSPTKA
FT                 LTSMTPMEAWTGKKPFVGHLKVFGSVAVALDKGPRKSKLQPKGKEYRMIGY
FT                 SVAAKGYRLYDPVSHQVIERRDVLFDEIQDDKDTVTFELPKAEVSMQSGGD
FT                 TDDIDSSGGDSSHGASVDGENPSSSGTDGYESATEKVESDEPAPRVGPGRP
FT                 RLIRTGKPGRPRKEYNILGALVASDVKIPVSYEEALISIHASHWSEAMQRE
FT                 YEALMANETWQLADLPAGQRAVGCKWVYSLKRDKDGQIERFKARLVAKGCS
FT                 QQYGINYAETFSPVCRLESVRFILALAAELKLYVNQMDVCTAYLNSDLSDT
FT                 VYMKQPQGYIDRAYPAKAMLLKKAIYGLKQSGREWNSKLNGVLTNLGFVSC
FT                 DNEPCLYQQRGKGNLSLILVYVDDLLIACQSKEDMLGIKSAISNAFECIDK
FT                 GVPELFLSMEVHREGELGPITIGHSQYIKELLQAHDMDKCRPVATPLDAGF
FT                 QVDCTNEQCQKVDPVMYQSMIGELMWLALTTRPDILHSVAKLAQRNKDPHA
FT                 EHLAGVKHVLRYLAATMNFKLHYKGCHQPLTGYVDADWGGDRTNRKSYTGY
FT                 VYFLAGGPISWRSEKQRSVALSSTEAEYMALSAACKESIFLRRLIIEIGCG
FT                 DEATSTTLYGDNLSAQELARNPVHHSRTKHIDIRYHFVRQIVEEGQVKLKY
FT                 ASTTDMIADILTKNLPKRKHVEFTKLLSLN"
XX
SQ   Sequence 4008 BP; 1207 A; 768 C; 1075 G; 958 T; 0 other;
     ggttcggatt ttgtaaatta aaaagtaaag tgattgtttt agttacgaac tattaacatc        60
     ggtgtgactc agagactaaa cgataatcag caatgagcgg gatgtatcaa atagacaaat       120
     tagaggaggg aaattatgac tcctggtgta ttcaaatgcg gtctgtgttg gtgcacgctg       180
     aattgtggag tgtggcatct ggtgacctgc taccaacgaa tgttcccgaa ggtgtgaatt       240
     ggcaggccaa ggatgaaaag gcgctggcca tgatcacatt gagtgtgaaa acttcacagt       300
     tgggatacat taaaaattgc agtaagtcgt ccgaagcatg gaacaaatta aagagtgttc       360
     atcaaccaag tggacctgta cgaaaggttc aactgtacaa gaaattgcta agcaagcgca       420
     tggaccaaag gcaaagcatt tcaagctaca ttaatgagtt cgtggatatt cttgatggcc       480
     ttgggtcagt aggaatcgag ctaaatgatg aactgcgctc aattgttttg ttgtcaagcc       540
     ttccagaaca attcgaaaat ttcgttgtcg ccatagagac gcgcgacagt ctgccgactt       600
     tcgatgttct atgcgtaaaa ctgaaggaag aaggcgaacg aaagggaaac acagaagatc       660
     aaaaggaata cgcaaaggca tataccgcag tacataagcc ggccgcgcac agagcgcaaa       720
     agaagagaaa caatacaatg atatgtttca agtgtggtga gcgcgggcat atgaaggctc       780
     agtgtaagaa ggagagcgca aatgtggaaa gggcagcaag agtggagaac aagcagtgca       840
     gtctattaaa tgcgttggac gcagataatt tgaaaaagag tatgtggtgt ttggatagtg       900
     gtgccacaag ccacatgtgt tgtgagaaac agttattcac aaagttcgag aaacacacag       960
     aaatgattgg tctggctgac tccggtttcc taaaagctga aggaaaaggg gaagtagagc      1020
     tgaagacaga gatatgcacg ctgctgttaa agaatgttct ctatgtgccc gaaatgaatg      1080
     gaaattattt ctcggtgagc agcgctgtac agaataaatg tttcgtcact tttggacaag      1140
     aatatgcacg agttatccaa aatggcgaat gcattgtaaa ggcgaacaga gttggaaact      1200
     tgtatatgtt tcgaggaaaa caaaacaact gttttgcggc ggttaaggct gatggtgccc      1260
     tgtggcataa acggtacggc cacttgaaca tcagcagtat gaaagatttg atcagcaaag      1320
     gaatggtgcg cggcattgaa aatatggttt tcccggcgaa tatgaattgc aaaacatgta      1380
     tggtcagcaa gattcatgcg caaccatttc ctgttgcaac caccagtaga gctcaagata      1440
     tattggaact agttcatgca gatgtgtgcg ggccctttgg cacacagtct cttgctggat      1500
     caaagtattt tctaaccttc atcgatgaca aatcaaggcg tatatttgtg tatttcctgc      1560
     ggacaaagga tgaagtcttc cagaagttcg tcgagttcaa aaccctggtt gaacggcaaa      1620
     cgggaaaaag tctcaaatgt atccggagcg acaatggcgg tgaatttgtc aacaaatcgt      1680
     ttgatgaatt tctgaaaact aatgggatcg agaggcagct gacagtggcg tacactccac      1740
     agcaaaacgg cgttgctgag agggcaaacc gcactctggt ggaaatgtca agatgtatgc      1800
     tggtccagtc aggattaggc gaatccttgt gggctgaggc agtcaacgca gctgtgtatg      1860
     tacggaatcg atcaccgacc aaggcgctga ccagtatgac gcctatggaa gcgtggactg      1920
     gtaagaaacc ttttgttggt catctaaagg tttttggctc cgttgcagta gctttggaca      1980
     agggtccaag gaagagtaaa cttcaaccaa aaggcaaaga atatcgcatg attggatatt      2040
     cagtagcggc taagggctat cgactgtatg accctgtgtc tcatcaggtg attgagaggc      2100
     gagatgttct ctttgacgag atccaagacg acaaggatac agtcacattc gaacttccga      2160
     aggcagaagt tagcatgcag tcaggcggcg atactgatga cattgacagc agcggtggag      2220
     acagcagcca tggtgcaagc gttgacgggg agaatcccag tagcagcggt actgatgggt      2280
     acgagagcgc aacagaaaag gttgagtcag atgagccagc tcctcgcgtt ggacctggca      2340
     gaccaaggct gattcggacc ggcaaacctg gccgtccgag aaaggagtac aacattcttg      2400
     gtgctctggt tgccagcgac gtaaagattc cagtatccta cgaggaggcg ttgatcagta      2460
     ttcatgcatc acattggtcc gaagcgatgc aacgcgaata tgaggcatta atggcaaacg      2520
     agacatggca gttggcagac ttaccggcag gacaacgagc ggttggatgc aaatgggtat      2580
     atagcctgaa acgcgacaaa gatggtcaaa tcgaacgttt caaggcgcgg ctggtggcaa      2640
     aaggttgctc ccagcagtac ggcataaact atgcggaaac attttctcca gtctgcagac      2700
     tggagagcgt gcgatttatt cttgcgctag cagcagaatt gaaattatat gtcaaccaaa      2760
     tggatgtatg tacggcatac ctcaacagtg acctgagcga tacggtgtac atgaagcaac      2820
     cacaagggta cattgatcga gcttatccag cgaaggctat gctgcttaaa aaggcaatat      2880
     atggattgaa gcagtcagga agggaatgga attcgaagct gaatggcgtc ctgactaatc      2940
     tgggttttgt ttcctgtgac aacgagccgt gtctctacca gcagagaggg aaaggtaact      3000
     tatcgttaat cttggtatat gttgacgatt tacttatagc atgccagtcc aaagaggaca      3060
     tgctcggtat caaatcggct atttcaaatg cgttcgaatg tatcgacaaa ggtgttccag      3120
     agctgttttt aagcatggag gtgcaccgtg aaggtgagct tgggcctatc accataggcc      3180
     actcgcaata catcaaggaa ctattgcaag ctcacgacat ggacaaatgt agaccagtgg      3240
     ctactccgtt ggatgcgggg ttccaggtgg attgtactaa tgagcagtgt caaaaggttg      3300
     atcctgtcat gtatcaatcc atgattggtg agctgatgtg gctggcactc acaaccagac      3360
     cggacatttt gcattcagtt gcaaagttgg cccagaggaa caaagatccg cacgcagagc      3420
     atctggctgg tgtgaagcac gttctgaggt acttggcagc gacgatgaac ttcaaactac      3480
     actacaaagg gtgtcaccag ccacttactg gatatgtgga tgcggattgg ggcggcgatc      3540
     gaactaaccg gaagtcgtat acgggctatg tttatttttt ggcaggtggc ccaatttctt      3600
     ggcgatctga gaaacaacgc agcgtggcac ttagcagcac ggaggcagaa tacatggcac      3660
     tgtcggctgc gtgtaaggag tccatattct tacgtcgctt aatcatcgaa attggctgtg      3720
     gagatgaagc tacctcaact accttatatg gcgataatct gagcgcacaa gagctggcta      3780
     ggaacccagt tcatcactca aggaccaagc atattgatat tagatatcac tttgtacgac      3840
     agattgtaga agaaggtcaa gttaagttaa agtatgctag tacaacagat atgattgcag      3900
     atatcttgac caagaatctc cctaagagaa agcatgtcga atttacaaaa ttgttaagtt      3960
     taaattgagt taaatggaat ttgtaagcat gcacgcattg aggaaggg                   4008
//
ID   Copia-2_DPer-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DPer_;
KW   Copia-2_DPer-I; Copia-2_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-264
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1490-1490 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 264 BP; 68 A; 58 C; 53 G; 85 T; 0 other;
     tgttgaagaa tgaccatctc tagcaatgca cgcatgtatt gacagacata tgaatatgta        60
     gacgtatgag tgagagacgt aacgaaacga cgttctctta tctccctttt tgttttccct       120
     tttttcggtc tctatctgcc tgcgagcaga gcattttttc ggtcacaaat aaaccttaca       180
     tatgaatggt tgcgttttta cttttcggta caagaacttc ccttgcaacg gcagcgaaat       240
     tctgtccaac aggttatggg ccca                                              264
//
ID   Copia-2_DTa-I repbase;    DNA;    INV; 3002 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 17.08, Created)
DT   20-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3002
RA   Kojima N.F., Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1608-1608 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..1232
FT                 /product="Copia-2_DTa-I_1p"
FT                 /note="DUF4219, UBN2, RVT."
FT                 /translation="MSGLYQIDKLEDNNYDSWSIQMRSVLVHSGLWSVTSG
FT                 DLTATNAPEGVDWSAQDQKALATITLSVKTSQLAYIKNCQNSKEAWGKLKE
FT                 VHQPRGPVRKVQLYRKLLGKRMGHGQNISSYINEFLEVLDGLTSVGIDLNE
FT                 ELRTIVLLSSLPGQFENFVVAIETRDELPSFETLCIKLKEEGERRGIANEQ
FT                 DDNTKAFVATQKHNSYSKTNDQKKRNNIVCFKCGERGHIKSQCPQAVDRDN
FT                 HIRTSNRQCSLLNALDASNFQNSMWCLDSGATSHMCCEKELFTKLEKHTEM
FT                 IGLANAGFLEAEGKGDVKLQTELCTLTLKNVLYVPKMHGNFMSVSSAVKNR
FT                 CTVKFGLQNAMVMQDGEREASFNQKAKNIQWLDTRWRPKLIACTIQLRD"
FT   CDS           join(1096..2688,2692..2961)
FT                 /product="Copia-2_DTa-I_2p"
FT                 /note="RVT_2 and RNase HI."
FT                 /translation="NSVCKTQWSCKTAKGKQVSTKRQRIYNGWILGGGQSL
FT                 SPVRFNYATSIRKKEMSFLMRIMMQETIGHDSSETGGDDSSSESSDQFESA
FT                 SESDEKDKDKKDKDEKDKEEQDEKDDQNEIXVGPGRPKLIRTGKPGRPKKQ
FT                 YNILGALVSNDVPIPATFKEAMSSPYASEWRVAMQREYDSLLANQTWXMAD
FT                 LPRNQRAIGCKWVFNVKRDKDGQIERFKARLVAKGCSQQYGVNYQETXSPV
FT                 CRLESVRFILALAAELGLYLHQMDVCTAYLNSDLSETVYMKQPEGYIDQSR
FT                 PGKSLLLNKAIYGLKQSGREWNSMLDSTLVKLGFIACENEPCLYKQTGNGN
FT                 LSLILVYVDDILVACQSKEDLVRIKSCISKSFECVDKGSLNLFLGMEIERE
FT                 GELGPISLGHSQYIKDLLHAHGIEDCRQAATPLDAGFQVACTSNQCKKVDP
FT                 TLYQSAVGELMWLALTTRPDILHSVSKLAQRNQDPHTEHMVGIKHVLRYLA
FT                 STVDMKLHYRQCGQPFLGYVDADWAGSHIPGTSTSLEVRFLGVIGCGDEKT
FT                 PIILYGDNLSSQPLAKNPVYHSRTKHIDIRYHFVRQVVKVLLKYKCINEMI
FT                 ADILTKILSKKKHVEFTEMLHLN"
XX
SQ   Sequence 3002 BP; 947 A; 582 C; 749 G; 721 T; 3 other;
     gttaaatcgg aagagtgttt gaaagttaag aactttgtgt aactcaaaag acaaatatga        60
     gtggtctata tcaaatagat aagttagaag acaataacta tgattcgtgg agcatacaga       120
     tgcgatctgt gttggtgcat tctggattgt ggagtgtaac gtccggagat ttgactgcta       180
     caaatgcacc tgaaggagtc gattggagtg ctcaagacca aaaggctttg gcgacaatta       240
     cattaagtgt aaaaacatcg cagttggcct acataaaaaa ttgtcagaac tcgaaagaag       300
     catggggaaa gctaaaagaa gtacatcagc ctcgtggtcc ggtacggaag gtacagttgt       360
     acaggaaatt gcttggaaag cgaatgggac atggccaaaa tatatccagc tatattaacg       420
     aattcctgga ggttttggat ggtctaacct cagttggaat cgatctaaac gaggagctac       480
     gcacaattgt tctactgtcg agccttccag gacaattcga aaatttcgtg gtggctatcg       540
     agaccagaga tgaattgccc tcgtttgaaa ctctctgcat taagctcaaa gaagaaggcg       600
     aacgaagggg aatcgcaaat gagcaggacg acaataccaa ggcgtttgtc gcaacacaga       660
     aacataattc gtattcgaag acgaatgacc agaagaaaag gaataatatc gtctgtttca       720
     agtgtggcga gcgtggacat ataaagtccc agtgtccgca agcggtggac agagacaacc       780
     acattcgcac atcgaaccga cagtgcagct tgctaaatgc gttggacgct agcaatttcc       840
     aaaactcgat gtggtgtctg gacagtgggg caacaagcca tatgtgttgt gaaaaagagc       900
     ttttcactaa actagaaaaa cacacagaga tgatcgggct tgccaatgct ggtttccttg       960
     aagctgaagg aaaaggtgat gtaaagttgc agacagagct gtgtacatta acattgaaga      1020
     atgtgcttta tgttccaaaa atgcatggca attttatgtc agttagcagt gcggtgaaaa      1080
     acaggtgcac ggtgaaattc ggtctgcaaa acgcaatggt catgcaagac ggcgaaaggg      1140
     aagcaagttt caaccaaaag gcaaagaata tacaatggtt ggatactcgg tggcggccaa      1200
     agcttatcgc ctgtacgatt caactacgcg actagtattc gaaaaaaaga gatgtctttt      1260
     ttgatgagaa tcatgatgca ggagacgatt ggtcacgatt caagcgaaac tggtggtgat      1320
     gacagctcta gtgaaagttc cgatcagttc gagagtgcat cagaatctga cgaaaaggat      1380
     aaggacaaaa aggacaagga cgaaaaggac aaggaagaac aggatgagaa agatgaccaa      1440
     aatgagatam gtgtagggcc tggtcggccg aagctcatcc ggactggcaa gcctggtcgt      1500
     cccaaaaagc agtacaacat cctaggtgcc ttagtgtcaa acgatgtccc gataccagca      1560
     acatttaaag aggctatgag cagtccgtat gcatccgaat ggcgcgtagc tatgcaaagg      1620
     gaatatgatt ctcttctcgc aaaccaaacc tggmagatgg cagatttacc aagaaatcag      1680
     cgtgcgatcg gatgcaaatg ggtattcaac gttaagcgcg acaaggatgg ccaaatagaa      1740
     cgcttcaagg cacgtctggt tgcaaaagga tgctcccagc agtacggcgt taactatcaa      1800
     gaaactttmt ctccagtttg caggctagag agcgtgcgtt ttatattggc cttagcagca      1860
     gagctcggtc tgtacctgca tcagatggac gtatgtacag cgtatttaaa cagcgatctt      1920
     agtgagacgg tatacatgaa gcaaccggag gggtacatcg atcagagtcg tcctgggaaa      1980
     agtttgcttc tcaacaaggc gatatacgga ttaaagcagt caggaaggga atggaattcc      2040
     atgcttgaca gtaccctggt taagctcggc ttcattgctt gcgagaacga accatgtctt      2100
     tacaagcaga ctggaaatgg aaacctctcg ctaatcctcg tatatgtcga tgacattctg      2160
     gtagcctgtc agtcaaaaga ggatctggtc agaatcaaat cgtgtatctc taagtctttc      2220
     gaatgcgtgg acaaaggctc actaaacctt ttcctgggca tggagataga gcgtgaagga      2280
     gagctaggac caatttccct gggccattcg cagtatataa aggatctgct gcatgcacac      2340
     ggcattgagg attgcagaca ggcggccaca ccactggatg caggattcca ggtagcatgc      2400
     actagcaatc agtgcaaaaa ggttgatcca actctatacc agtcagctgt tggcgagcta      2460
     atgtggcttg cacttacaac caggccggac attttgcatt ccgtttccaa actggctcaa      2520
     cggaatcagg acccacacac cgaacatatg gtcggtatca agcatgtact aagatatctg      2580
     gcatcaacag tggacatgaa gctacactac aggcagtgtg gtcaaccttt tcttggatac      2640
     gtagacgcgg attgggcagg aagtcatata ccgggtacat ctacttccta gctggaggtc      2700
     cgatttcttg gcgtaattgg ttgcggagac gagaagactc caatcattct ttacggcgac      2760
     aatttgagtt cccaacctct ggccaagaat ccagtttatc attcaagaac aaaacatatt      2820
     gatatacgct atcattttgt aagacaagtt gtcaaggttt tgttaaagta taaatgtatt      2880
     aatgaaatga ttgctgatat tttgacaaaa attctctcaa agaagaaaca tgtagaattt      2940
     acagaaatgt tacatttaaa ttagattttc gtttttgtaa acatgcaagc attgatgaag      3000
     gg                                                                     3002
//
ID   Copia-2_DTa-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 17.08, Created)
DT   20-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-183
RA   Kojima N.F., Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1609-1609 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 183 BP; 54 A; 31 C; 38 G; 60 T; 0 other;
     tgtagaaaat aattgcgttt gtagaagtct ggcaatgctg gcatgtacta tagaggtctc        60
     gctcttacga agatggagca acatcaatgt atgataattg tattctcctt ttaagttagt       120
     tgcaaataaa ctcttcatgt gaacacacgc acggcggttt atattattag atttgccagc       180
     tca                                                                     183
//
ID   Copia-2_DWil-I repbase;    DNA;    INV; 4026 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DWil_;
KW   Copia-2_DWil-LTR; Copia-2_DWil-I.
XX
NM   Copia-2_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4026
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4026
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (05-DEC-2021).
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..3993
FT                 /product="Copia-2_DWil-I_1p"
FT                 /translation="MSALYQIDKLEDSNYDSWCIQMKSVLVHADLWNVASG
FT                 VLARPTTGENTGWTTLDQKALAMITLSVKTSQLGHVKHCASAHEAWKKLQE
FT                 AHQPRGPVRKVALFKKLLSKRIQEGQSISSYLSDFREILDKLAGVGIEILD
FT                 ELVTIILLSSLPDEFDNFVVAIETRDSLPSFDMLCIKLREEGERKRESEKP
FT                 IESAKAFTVVEKQSMQRDNWKKKQKVLNCFACGGKGHFKANCPSVNGRKVA
FT                 SNPNKAVQSSLGLLNALDAKCVERSNWCLDSGATSHMCCNRDLFSTFVKHS
FT                 EKIVLADNNFLQAEGKGEIKLNMVSRILTLKNVLYVPKMRGNFVSVSKAVE
FT                 HGSIVEFGQKYARVIQKGECILKADKVGRLYIFGTAPSECYAIEQSYEDLW
FT                 HKRYGHLNYGSLAEIARKDLARGMGTFDSTSLEPCKICMVSKITVQPFPDS
FT                 TKNRAKEILELVHSDVCGPFDTKSLGGSRYFLTFIDDRSRRIFVYFLKGKD
FT                 EVFGKFVEFKNMAERQTGKKLKCIRSDNGREYVNKSFDEFLKGNGILRQLT
FT                 VPYTPQQNGVAERVNRTLVEMSRCLLIQSGLHQSLWAEAVYTAAYLRNRSP
FT                 TRALVNMTPMEAWNGKKPSISHLKVFGSIAVALDKGHHKGKFDPKGKEYRM
FT                 VGYSRNAKGYRLYDAETRQVVEKRDVLFDERFGNGDSNGDIVKFDFPYADD
FT                 QDSGSVDAADDLSSTDDSDAEVSEKGSSSEDFDMAVEREVAEPVVEQRVGP
FT                 GRPKLIRTGRPGRPKKQFNILSALITSEVIIPETYEEALSSPFASHWREAM
FT                 QKEYDSLMSNHTWQLSTLPEGYKPVGCKWVYSVKRDAKGEVERFKARLVAK
FT                 GCSQRYGVNYNETYSPVCRLESVRFILALAAQLKLYLHQMDVCTAYLNSDL
FT                 GDTVYMRQPEGYATEDKSKVLLLKKALYGLKQSGREWNSKLDSVLRANGFI
FT                 PCDNEPCLYKQQAKGNLSLILVYVDDLLIGCQEKSDLDRIKSAIMAAFECV
FT                 DKGPVRLFLGMEVHRDGELGEISLGHSQYIKDLLERYGYAQCRPAATPLEA
FT                 GYQVACDKMECKRVDATLYQSMIGELMWLALTTRPDILHSVSKLAQRNKDP
FT                 HNEHLAAIKHVLRYLASTVGFKIHYKQSDAAFTGFVDADWAGDRIDRKSYT
FT                 GYVYFLAGGPISWKSEKQRSVALSSTEAEYMALSTACKEAIVLRRLIIEIG
FT                 CGEEDTSTVLYGDNLSAQQLAKNPVHHSRTKHVDIRYHFVRQVVNDGQIVL
FT                 KYKSTNEMIADILTKNLAKKKHVEFTNLLSIR"
XX
SQ   Sequence 4026 BP; 1193 A; 729 C; 1083 G; 1021 T; 0 other;
     ggttatggac ccaggcaacg tgcctatgtg gttgctgtgg taatttctag aagaaattag        60
     atttcgcgct gtgttctaga cggttttttc acaaagtata tataaacgag tataatgtcg       120
     gcgttatatc agatcgataa actcgaggac agtaattatg actcgtggtg catccagatg       180
     aaaagtgtgc tggtgcatgc ggatttgtgg aatgtggcgt caggcgtatt ggcaaggcca       240
     actacggggg agaacaccgg atggacgacg ctggatcaga aggcattggc aatgatcacc       300
     ttgagcgtca agacttcaca gttgggacat gtgaagcact gtgcaagtgc acatgaggct       360
     tggaagaagc ttcaggaagc tcatcaaccc agaggacccg ttagaaaagt agctcttttc       420
     aagaaattgc taagtaaacg catacaggag ggtcaaagca tatcgagtta tttgtcggat       480
     ttcagggaaa tcttggacaa gcttgctggc gttggaattg aaatattgga cgagcttgta       540
     acgattattt tgctatccag tcttccagac gaattcgaca atttcgttgt cgccatagag       600
     acgcgcgaca gtttgccgag tttcgacatg ttatgcataa agctgagaga agaaggagag       660
     cgcaaaagag agagcgaaaa accgatcgag agcgcaaaag cgtttacagt ggtggaaaag       720
     caatcgatgc agagagacaa ttggaagaaa aagcaaaaag ttttgaactg ttttgcgtgt       780
     ggcggcaaag gccattttaa agcgaattgt cccagtgtaa acggtcggaa ggttgcatcg       840
     aacccgaaca aggcagtaca gtcatcgtta ggtttgctga acgcgttgga cgcgaaatgt       900
     gttgaacgat cgaactggtg tctggacagt ggcgccacca gccatatgtg ttgtaacaga       960
     gatttgtttt caacatttgt gaaacattcg gagaaaattg ttttggctga taataacttt      1020
     cttcaggctg aaggaaaggg cgagataaag ctgaacatgg tttcacgtat acttacatta      1080
     aagaatgtat tgtatgtacc caaaatgaga ggtaatttcg tgtcggtgag caaagcagtt      1140
     gaacatggaa gcatcgttga atttggacaa aagtatgcac gagtgatcca aaaaggtgaa      1200
     tgcattctga aagcggacaa agttggccgt ttgtatattt ttggaacagc accgagcgaa      1260
     tgctatgcca ttgaacagtc ttacgaagat ttgtggcata aaaggtacgg acatctcaac      1320
     tatggcagtt tggctgaaat tgcacgaaag gatttggccc gtggcatggg aacgtttgac      1380
     tcaacgtcgt tggaaccctg caagatctgc atggtaagca agatcacagt acagccattt      1440
     ccagattcga ccaagaacag agctaaggaa atcttggagc tggtgcattc agatgtttgc      1500
     ggtccgtttg atacaaaaag ccttggaggc agcagatact ttttgacatt tatcgatgac      1560
     aggtcacgtc gcatatttgt atatttcctg aagggaaagg atgaagtatt tggaaagttt      1620
     gtcgagttta aaaacatggc agagcggcaa actggaaaga agctaaagtg cattcggagc      1680
     gacaatggtc gcgagtacgt caataaatcg tttgacgagt ttctcaaggg caatggaata      1740
     ttgcggcagc tcacggtacc atacacgccg cagcagaacg gtgtagcaga gagagttaac      1800
     agaactcttg tggagatgtc aagatgcttg ctcatccagt ctggtctaca tcaatctctt      1860
     tgggctgagg cagtttatac agctgcttat ctgcggaata ggtcaccaac tcgagccctg      1920
     gttaacatga ctccaatgga agcatggaat ggtaagaaac catcaataag tcatttaaaa      1980
     gtttttgggt ctattgcagt ggcactggac aaaggacatc ataagggcaa gtttgatcca      2040
     aagggcaaag aataccgaat ggttggttat tctcgaaatg cgaaagggta tcggttgtac      2100
     gacgccgaaa ccaggcaagt tgttgagaag cgagacgttt tgttcgacga gcgtttcggc      2160
     aatggcgatt cgaatggtga tatcgtcaag tttgattttc catatgcgga tgatcaggat      2220
     tcaggatctg ttgatgcagc agatgacttg agcagtacag acgactctga tgcagaggtc      2280
     agcgagaagg gcagcagtag cgaagatttc gacatggcag ttgaacgaga agtggcagaa      2340
     cctgtggttg aacaacgtgt tggacccggc aggccgaagc tgattcgaac tggaaggcct      2400
     ggcagaccaa agaagcagtt caacatttta agcgcattga ttacaagtga ggtgatcata      2460
     ccagagacct atgaggaggc gcttagtagt ccgtttgctt cgcattggcg tgaggctatg      2520
     caaaaggagt atgattcctt gatgtcaaat cacacttggc agcttagtac gctaccggaa      2580
     gggtataaac ctgttggctg caagtgggtc tacagtgtaa agcgtgatgc aaagggagaa      2640
     gtcgagcgtt ttaaggcgag actagtagca aaaggatgtt cacagcgcta tggagtgaac      2700
     tacaatgaaa catactcgcc tgtatgtcgc ttggagagtg ttcgattcat cttggcccta      2760
     gcagcgcagt taaaattgta tctacaccag atggatgtat gcacggctta cttaaacagt      2820
     gatttgggcg ataccgtata catgaggcag cccgaaggat acgcaactga agacaaaagt      2880
     aaggtacttc tgttgaaaaa ggcgttatat ggactcaaac agtctggacg ggagtggaac      2940
     tccaaactcg atagtgtttt gcgagctaat gggttcatac cttgcgacaa tgaaccatgt      3000
     ctatacaaac agcaagcaaa aggtaatcta tcactaatcc ttgtctatgt agacgatctt      3060
     cttataggat gccaggagaa atcggatctt gacaggatta agtcagctat aatggcagcg      3120
     tttgaatgtg ttgacaaggg acctgtgcgt ttgttccttg gcatggaggt tcaccgtgat      3180
     ggcgaattgg gcgaaatatc attgggtcat tcacagtaca tcaaggatct actggagcga      3240
     tatggctatg ctcagtgcag accagctgca acaccgttag aagcagggta tcaggtagcc      3300
     tgcgataaaa tggagtgtaa aagggttgat gcaactcttt atcagtcaat gataggcgag      3360
     ctaatgtggc ttgcgttgac tactagacca gatatacttc actcagtatc gaagttggct      3420
     caacgtaaca aggaccccca taatgaacac cttgcagcca taaagcatgt tttacgatat      3480
     ttggcttcga cagttggctt caagattcat tacaagcagt cggatgcggc gtttactggt      3540
     ttcgtggacg cagattgggc aggcgatagg attgatcgca agtcttatac aggatatgta      3600
     tattttctgg ctggcggacc gatatcatgg aaatcggaga agcagcggag tgttgctctt      3660
     agcagcaccg aagcagagta catggcgtta tcaacagcgt gcaaagaagc cattgtattg      3720
     cgtcgattaa tcatcgagat tggttgcgga gaggaagata catctaccgt tttgtatggc      3780
     gataacctca gcgcgcagca attggctaag aacccggtac atcattcaag gacgaagcac      3840
     gtggacatta gatatcattt tgttagacaa gtagttaatg atggtcagat tgttttaaag      3900
     tataagtcta ctaatgaaat gatagctgat atcctaacca agaatcttgc gaagaagaag      3960
     catgtagagt ttacgaattt gttaagtata agatagattt gtggacatac ttgcattgag      4020
     gaaggg                                                                 4026
//
ID   Copia-2_DWil-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DWil_;
KW   Copia-2_DWil-LTR; Copia-2_DWil-I.
XX
NM   Copia-2_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 187 BP; 69 A; 38 C; 28 G; 52 T; 0 other;
     tgttgaaata agtctctctc aactcaatgc atgcatgatc acacacatac gaatatatat        60
     atgtaacttt gtatactctc tctcgagatg cgttaaagag aacaatgact cgatgagaga       120
     caaatagaag ttagtcgcga ataaactgca caaccaacca cacgcattct gttttattat       180
     aacaata                                                                 187
//
ID   Copia-2_DYa-I repbase;    DNA;    INV; 5122 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5122
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1801-1801 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(285..1052,994..4476)
FT                 /product="Copia-2_DYa-I_1p"
FT                 /note="integrase, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDKGKRNIKPFNGEKYSIWKFRIRALLEENDLLDVID
FT                 KEQTEISEEVKWAERNAKGIIIEYLSDSFLKFANNDNTAKQIFEKLDSIYE
FT                 RKSLASQLSLRKQLFSLKLKGDTQLVNHFHLFDDLITELVAAGAKLDEMDK
FT                 VAHLLNTLSTNYEGVITAIETLTESNLTLDFVKTRLLDHEIKLRGINKDTS
FT                 AKVLQAIGNREXRENTFKNKAMKFMKKPFKNKPKLKCFHCKKLGHIKKRLF
FT                 SIEKAGRKPEYSRWKKKDCFLLKRQAGNQNIPDGNSVRERQAQMAAETRTR
FT                 PERAFAFLMNSGVREKQTQKVATQRKCAVAFMVKLANYTEKPDEVNFILDS
FT                 GASDHLVNDINLFSEYENLNVNVAIEIAKRGEFVYATAKGQVKLNNSGSNI
FT                 TLHNVLYCKEIPHNLLSVKKMIDAGMSVEFNTDGIKVIKNGNLVFEGICEY
FT                 NVPTVKFNLNSKLYTSVISNDVEYRLWHERLGHISVGKFLEIKRDGLFEDS
FT                 ELIKNVIVNSSKLCEACINGKQSRLKFEKCKNKENIQRPLFVIHSDVCGPI
FT                 TPSTIDNKNYYVVFIDQYTHYTVTYLITYKSDVFFVFKDFVAKSEAHFNLK
FT                 MVNLYIDNGREYLSNEMREFCVEKGISYHLTVPHTPQLNGVAERMIRTITE
FT                 KARSMINCTKLNKSFWGEAVLTATYLINRSPSRALENMRKTPFEMWHKKKP
FT                 VLKYLKIFGSTVYALNKVRKRKFDEKSIKTILVGYEPNGYKLWNENSRKFM
FT                 TARDVVVDEMNMKYVTSNENDSVKEHDCDSPIEENEELNFPLQENCESRDS
FT                 KSNENDSVKEHDCDSPIEENEELNFPLQENCESTDSKSXENLNENSTCLEN
FT                 TDPVAETGDEIKENINQEEIRRSERIKGKPKLSYRFLEKCLMNTQMCSNDI
FT                 PNTYEEIKTRDDRILWEDAIKDELNSHFANNTWSLVQMPKEKNIVDCKWVF
FT                 SIKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRYLLAFSN
FT                 QYNLLIHQMDVKTAFLNGTLKDEIYMKIPKGLNQYDGNKVCKLNKAIYGLK
FT                 QAARCWFEIFESALKSFGFRSLEVDRCIYILDEGDIHKNIYVLLYVDDIII
FT                 STSDSERMSKFKTYLLNKFQMTDLNEIRYFIGIKIERESDQICLSQSAYIK
FT                 NVLKKFNMEDCNPVGTPLPSKINYEALQVEESYDAPCRNLIGCLMYIMLCT
FT                 RPDLSTSISILSRYTNYNNRELWQCLKRILRYLKGTVNLKISFKRNLNVNK
FT                 ILIGYVDSDWAGDETDRRSTTGYIFKMFENCSICWSTMKQKSVAASSTEAE
FT                 YMALFEGVREALWLKSLTNEMKLELNSPIVIFEDNQGCISIANNPTCHKRT
FT                 KHIDIKYHFIREQIENKLIFVEYLSTDSQLADILTKPLPTARFTALRDQLG
FT                 LTE"
XX
SQ   Sequence 5122 BP; 1949 A; 658 C; 983 G; 1511 T; 21 other;
     ggttatgggc ccagtcacac tttcggccwa gcagtgaaat tawttaattg tgmaaataaa        60
     aamgaamaac gaataaaawc gaaagccawt kmawacgagt tctasgaaat acatacatgt       120
     ktatgtatga cggtacgmag aaacggcgaa cawttctggt taagtgttaa aagcggtgca       180
     gcawcgaagt gattctaaga agcgcaaagc aatcgkmgga aaatagaaaa gaaaaataaa       240
     gaggaggaac agttagtttt agtcaagaaa aggaaaggaa agacatggat aaaggaaaaa       300
     ggaacataaa accgttcaat ggtgaaaaat attctatatg gaagttccga ataagggcac       360
     tgttagagga aaacgatttg ctagatgtaa tagataaaga acaaacagaa ataagcgagg       420
     aagtaaaatg ggcagaaaga aacgcaaagg ggatcataat agaatatctg agtgactctt       480
     ttttaaaatt tgccaacaat gacaatacgg caaagcagat ttttgaaaaa ttggattcta       540
     tttatgagcg taaaagcttg gcatctcaac tgtcactacg caagcaatta ttctctttaa       600
     aattaaaggg tgatactcag ttagtgaacc attttcattt atttgatgat ttaataacgg       660
     agttagttgc ggccggagca aagttggacg aaatggacaa agttgctcat ctgcttaata       720
     ccctttcgac caactatgaa ggggtaataa cagctataga aactcttact gagagcaatt       780
     taacattaga cttcgtaaag acacgcctgc tcgatcatga aataaaatta agaggaatta       840
     acaaagacac aagtgctaaa gtgctgcaag ctataggcaa tcgagagcmt agggaaaata       900
     cattcaaaaa taaagctatg aaatttatga agaaaccttt taagaataag ccsaaactaa       960
     aatgttttca ttgcaagaaa ttgggwcaca taaaaaaaag attgttttct attgaaaagg      1020
     caggcaggaa accagaatat tcccgatgga aatagtgtta gagagagaca ggctcagatg      1080
     gcggcagaaa cacgcacacg gccagaacgt gcgtttgctt ttctgatgaa ttcaggagtt      1140
     agagagaaac agacgcagaa ggtagcaaca cagcgaaaat gcgcagttgc atttatggtg      1200
     aaattagcaa attacactga aaagccagac gaagtcaatt ttatattaga ttcgggggca      1260
     tcagaccacc tagtgaatga tattaattta ttttcggagt atgagaattt aaatgtaaac      1320
     gtggctattg agattgcaaa gcgtggagaa tttgtttatg ctactgcgaa aggacaagtt      1380
     aaacttaaca attctggaag caacattaca ttacacaacg tgctgtattg taaggaaatc      1440
     ccgcacaatt tgctatccgt aaagaagatg atagatgctg gaatgtccgt tgagtttaat      1500
     acggatggta ttaaagtaat caaaaacggt aacttggtat tcgaaggaat atgtgagtat      1560
     aatgtaccga ctgttaaatt taatttaaat agtaaattat acacatctgt aatatcaaat      1620
     gatgtagagt atcgcttgtg gcatgaaaga ttgggacata taagtgtagg aaaattctta      1680
     gaaattaagc gagatggctt gtttgaagat agtgaactta taaaaaacgt aatagtaaat      1740
     agtagtaaat tatgtgaggc gtgtattaac ggaaagcaat caagactaaa atttgaaaaa      1800
     tgcaaaaata aagaaaatat tcaacgccca ctatttgtaa ttcattcgga tgtatgtggc      1860
     ccgattacgc cctcaactat tgacaataaa aattactatg tagtatttat tgatcaatat      1920
     acacattata ctgtgacgta tttaataact tataaatcgg acgtgttttt tgtatttaaa      1980
     gatttcgtag cgaagagtga ggctcatttc aatctaaaaa tggttaacct atatattgat      2040
     aatggaaggg aatatctctc taatgaaatg cgtgaatttt gtgtagaaaa aggtatcagc      2100
     tatcatttga cggttcctca taccccacaa ctaaatggtg ttgcagagcg gatgattaga      2160
     acaatcactg aaaaagctcg ttctatgatt aactgtacta aactaaataa aagtttttgg      2220
     ggtgaagctg ttttgacagc aacatattta attaacaggt ccccaagtag agctttagaa      2280
     aatatgagaa aaacaccatt tgagatgtgg cataaaaaga agccggtttt aaaatattta      2340
     aagatatttg gctcgacagt gtatgcacta aataaagtgc gaaagcgaaa atttgacgag      2400
     aaatcgatca aaactatact tgtcggatat gagccaaatg gctataagtt gtggaatgag      2460
     aactcgagaa aatttatgac agctagagat gtagtggtgg atgaaatgaa catgaaatat      2520
     gtgacttcaa atgaaaatga ctctgtgaaa gaacatgatt gtgattctcc aattgaggag      2580
     aatgaagagt tgaattttcc attgcaggaa aattgtgaat ctagggattc gaagtcaaat      2640
     gaaaatgact ctgtgaaaga acatgattgt gattctccaa ttgaggagaa tgaagagtta      2700
     aattttccat tgcaggaaaa ttgtgaatct acggattcga agtctgwtga aaatctaaac      2760
     gaaaattcca cttgtctcga gaataccgat ccagtggctg aaactggtga tgaaataaaa      2820
     gaaaatataa atcaagaaga aattagacgc agtgagagaa ttaaaggcaa accaaagtta      2880
     tcatatagat ttttagaaaa gtgtctgatg aatactcaaa tgtgttcaaa tgatattcca      2940
     aatacatatg aagagattaa aactcgtgat gacagaatct tgtgggagga tgccattaaa      3000
     gatgaattga attctcattt tgcaaataat acatggagct tagtgcaaat gcctaaggag      3060
     aaaaatatag tagattgcaa atgggtattt agtataaaac aagatgaaaa tggtaattta      3120
     cttaaatata aggcaagatt ggtagccagg ggattcactc aagaatatat gatggattat      3180
     gatgaaactt ttgcaccagt tgcacgaatt tctagtttta gatatctttt agctttttca      3240
     aatcaatata atttactgat ccatcagatg gatgtcaaaa cagctttttt aaatggaaca      3300
     ctgaaagatg aaatttatat gaagattcca aaaggtttaa accagtatga tggaaataaa      3360
     gtatgtaaac ttaataaagc catttatggt ctaaaacaag ctgccagatg ctggtttgag      3420
     atatttgaaa gtgcattaaa aagttttgga tttcggagcc tagaagtaga cagatgtata      3480
     tatattttag atgaaggaga tatacataaa aatatatatg tactcttata tgttgacgat      3540
     ataataattt ctactagtga ttctgaaaga atgtctaaat ttaaaacata tcttttaaat      3600
     aagtttcaaa tgactgatct aaatgaaata cgatatttta ttggcataaa aattgaaaga      3660
     gagagtgatc aaatttgtct tagtcaatct gcatatatta aaaatgtttt aaagaaattc      3720
     aatatggaag attgtaatcc agttggaact cctcttccaa gcaaaataaa ttatgaggct      3780
     ttgcaagtgg aggagtctta tgatgcacca tgtaggaatc tgattggttg tttaatgtac      3840
     ataatgttat gtacacgacc ggatttaagt acatcgataa gcatcttaag tcgatatacg      3900
     aactacaata atagagaatt atggcaatgc cttaaaagaa ttttaagata cctaaaggga      3960
     actgtaaatt taaagatatc atttaaaagg aatttaaatg taaataaaat tcttattggg      4020
     tatgttgatt ctgattgggc cggggatgag actgatagaa gaagtactac agggtatata      4080
     tttaaaatgt ttgaaaattg ttcaatttgc tggagtacta tgaaacaaaa atctgttgct      4140
     gcgtcatcta ccgaagctga atatatggcc ttattcgaag gagtaaggga agcattatgg      4200
     ttaaaatcat taacaaatga aatgaaatta gaattaaata gtccaatagt tattttcgag      4260
     gataaccaag gttgtataag catagccaat aatcctactt gccacaagag aactaagcac      4320
     atagatatca aataccattt tattcgagaa caaattgaaa acaaactaat tttcgttgag      4380
     tatctttcca cagattccca attggctgat attctgacaa agccactacc aactgccaga      4440
     ttcactgcac tgcgagacca actggggtta actgaatgat gaaattaatc agaatgagaa      4500
     aaatgaattt ttatatgaag tttgaatata ttatttattt tatatatgta tatatatata      4560
     ttttataacc ataatcaaat caaaacaatt actagtctaa tcattacttt gtttatctaa      4620
     ctgaatcttg aatgatgaaa ttaatcagaa tgagaaaaat gaatttttat atgaagtttg      4680
     aatatattat ttattttata tatgtatata tatatataat ttataaccat aatcaaatca      4740
     aaacaattac tagtctaatc attacttctt gaatgatgaa aataatctga aggagcaaaa      4800
     ttattttttt tatgaagttt aaatctttta tatatatgta tatattcata accaaaccaa      4860
     aactattgtt agactaacta ttactatgtt tatttaattg aaacttgtaa gatttgaaaa      4920
     gtgtaaatta tttgattgaa ctgattgggt tttactgggt ttccccaatt ctttgcagca      4980
     aatgctggtt caataaaagt agccccagag aaaaaagaaa agaataagaa tacagccatt      5040
     agaaacgcac tcgtctgaaa gtaatttttt tatttcattt aattttaaat cagtttgtat      5100
     cagtgtgatt tttgaggtgg cg                                               5122
//
ID   Copia-2_DYa-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-276
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1802-1802 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 276 BP; 92 A; 59 C; 45 G; 80 T; 0 other;
     tatagttcac gtttatgttt actataatcc agcccttcag ccaatcagtg aaaacacaat        60
     taatttattc ttgtttgata cttcctttat taagccaccg aaccgcactc attagtagtc       120
     tgcaagcgaa tagaacgata actttataat gagcatgtaa gaggcaacaa cgagagagaa       180
     caaagagagc gataatagag cgcgttctct ccaagatctc ccatcactat cgcatacaca       240
     cagatttgca taagtgtgac ttttgtattt tcaaca                                 276
//
ID   Copia-2_FoCa-I repbase;    DNA;    INV; 5799 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5799
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2563-2563 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..5779
FT                 /product="Copia-2_FoCa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MTTTTSGTTTTTTTTIVGRKFDTSSISKLDGDNFRVW
FT                 KVRMSSLFRSHDLNEIVDGTSTRPAAVGDPQKEWDKRNNEAMTSLYLCMTD
FT                 AEVESISGCATAHEIWNKLNTMYQSISGESKQVLWQKYYSIMVTSGKSPVK
FT                 TMIEIQNYAAQLRSMGAVIDDEMEVARIISSMMDEKFRQFREAWRSVEIAK
FT                 QTSALLLSRLKTWELEDGETYKNASHVEETSKAYAAKKERPKRTRQEISDL
FT                 KKKTKCHICKLKGHWKSECTFKDKDSAKKEQKSDEKSEGAYMAGGLSDLWI
FT                 NDSGANRHYCGRKDWFFEYKEYPCPKSVSMADNSLMLVKGVGAVKVKALIN
FT                 KVWVEITIYQVEYVPGGANLLSENVLLDKGLVVSKSGNNQIIYYRDGQRDI
FT                 EAERRDGLQIMKFKPIVNRAMACIKPVVWHERLAHINSKFLNDTKDKEAAY
FT                 GLENMKREDVNFKCEICMKAKSKKKSYVTVEKTVKYLPGECLHSDLGYANA
FT                 ISKNGNSYFLVVKDEASAFRQVYFQKKKGETAMNVIDAINFMRTQTGNNVK
FT                 MFRSDNGGEYKCQELVSFFSKRGIRFGLNSPQCSPSNGFVEREMRIEQDAA
FT                 RSMLIQSQLHESHWEDAIRTACYVLNRTLSTKNTEKTPYEQVIGKKPTLQH
FT                 VRIFGSKAFAHITNGQGKKFDDKATECILVGFDAHSKNYILYDPAEGKYHY
FT                 QAKHVNFIETNASRRESITNDEPDEIITTFSTEEVRNDETEQTDGASETED
FT                 EEAETYSSASNSPQQTNPKVHQHNETWADEIQWEASQEDRNFVNTSLPPQP
FT                 SSSKPKRERQQRKFYQAGSGDANVAMHATNTEPTTYSAALSSKYAGEWKEA
FT                 MDSEMRSHSENGTWRLVKRPVGKKVLKNRWVYKIKHNPNGEIEKFKARLVV
FT                 KGFNQVKGVDYTETFAPVSRYETIRTLLSVAAARKLKLVQFDIGTAYLNSE
FT                 LKEEVYMEQAEGYEIGSDMVYILDKTLYGLPQSGRAWFETFSAKLKEMGYV
FT                 QSKSDKCLFMKTTSTGKIYVVIYVDDGLFAGKNKKELLAEIEKLKASFKVT
FT                 IQPLVRFLGIEILQVEEGIFLHQTKYIEDLLERFGMQDCITLPIPMQPGLQ
FT                 FDGSECDPNLEFQQLIGSLLFLVRCTRPDIAYATHYLSRFFGSYNKLHMNA
FT                 AKRILQYLKGTKSLGIMYTESEADRDVVCAYVDADYGSDTTSRKSTSGVLF
FT                 THNNSPIVWMSKRQTCISLSSCQAEYVALALAGKEAVWVTRLYLELDMISL
FT                 ENEPICLKTDSQSAIRLAKNDEFHDKSKHIDIRHHFIRDLVETNQVVLEHL
FT                 PDKVQPADILTKSVVRESFETKRYLMGMVPPPPAKGEKRRALCSVIVNPKR
FT                 PSLLWSFMALLLSFLTIGATDLHKEGSPVLWRKSYEPVVIGFHAINMRIAL
FT                 ISPCEFLPLDDLEPRIANIMKKQCEKAYDEIFLNNLEDICSPPQGRRRQKR
FT                 VIPVVVGFILVACVGSAGIGLGSYAIAETHRLETRQDELEFAFNKLERQVY
FT                 EDRQHIKVLKMEIIKVGYQVQQTMNDLNNFKEGVVTIQYLISYLTSKLVEG
FT                 RKVIWDTKKAWKKKQMTPDLLEYLNFTLPCGDECPVEFGIFHLCQMNKERT
FT                 QINLDFSVPIVNKNLTKLTADPFFLMLKRDNLTCRMEYSGPTVATLHVGEE
FT                 CVYETYYEKAHNNIEMTTSNKCRNESSFSNGGKLYKIEKCQISAIGDEKEF
FT                 VQVKILDSLYHVYCPGGEYLVGKRRVKCPDKVFTLPLSLTFTLNEVEFKGN
FT                 ILRVVYKEREDPLFSELVNWHLNPRVNWSHLSEDLNEIWNTNDERIQKEAR
FT                 NLQVFSFSDDNWTASEITVLILGILFSLVVFLCAIVFLVKKCNMCPKRIQR
FT                 QAEEQPLKEINGPSNHIIIHT"
XX
SQ   Sequence 5799 BP; 2032 A; 1031 C; 1288 G; 1448 T; 0 other;
     cgttatcagc acgggttctg caaagtttct gaaaaactta aatttctgaa aagattttaa        60
     gtttaaaaat ataagtttga gacaataaag tcagaaaatg actaccacga cttcgggaac       120
     gacaacaact accactacga caatagtggg tagaaagttt gacacatctt cgatatctaa       180
     acttgacggt gataatttcc gtgtttggaa agtgaggatg tcaagcctat ttaggtcgca       240
     tgacctaaac gaaatagtgg acggaacatc caccagacct gcagcagtag gtgatcctca       300
     aaaagaatgg gataaacgca acaatgaagc tatgacttcg ttatatttgt gcatgactga       360
     cgccgaggtg gagtcgattt ctgggtgtgc aacagcccat gaaatctgga ataaactaaa       420
     cacgatgtac caaagcatca gtggagagag caaacaagtg ctgtggcaga aatattacag       480
     cattatggta acctcaggca agtccccagt taaaacaatg attgaaatac aaaattatgc       540
     cgcccaactg cgaagtatgg gagctgtaat tgatgacgag atggaggtcg ctaggataat       600
     ttccagtatg atggacgaaa agtttcgcca atttcgagag gcctggaggt cagttgagat       660
     tgcgaaacaa acatcagctc tacttctctc caggttgaaa acctgggagt tagaagatgg       720
     cgagacgtac aaaaatgctt cacatgtcga agagacatca aaagcatatg cagccaagaa       780
     agagcgacca aagcgaacca gacaagaaat tagtgatctg aaaaagaaaa ctaaatgtca       840
     catctgtaaa ttaaagggcc actggaaaag tgagtgcacc ttcaaagata aagattctgc       900
     aaagaaggaa cagaaatctg atgaaaaatc agaaggagct tatatggctg gtgggctaag       960
     tgacctttgg ataaatgact ctggtgcaaa tcgccattat tgtgggcgaa aagactggtt      1020
     tttcgaatat aaagaatacc catgcccaaa atcggtcagc atggccgata actctctcat      1080
     gcttgtaaaa ggcgtaggag cagtgaaagt gaaagcactt attaacaaag tttgggtaga      1140
     aataactatt tatcaagttg aatatgtgcc agggggggca aatttactgt cagaaaatgt      1200
     tcttctcgac aaaggcttag tagtaagcaa aagcggaaat aatcaaatta tttattatcg      1260
     cgatggacag cgtgatattg aagccgaacg aagagacggt cttcaaataa tgaaattcaa      1320
     gccaattgta aacagagcga tggcctgtat caagcctgtc gtatggcacg agagattagc      1380
     tcatattaat tccaagtttc tgaacgatac taaggacaaa gaggctgcgt atggcctgga      1440
     aaatatgaag cgagaggatg tgaatttcaa gtgcgaaata tgcatgaaag caaagtccaa      1500
     gaagaagagt tacgttacag ttgaaaaaac tgtaaagtat ttgccaggag aatgcttaca      1560
     ttccgatctt ggttatgcaa atgcaatttc gaaaaatgga aattcgtact tccttgtagt      1620
     aaaggacgaa gcatcagctt ttagacaagt atatttccaa aagaaaaaag gtgaaaccgc      1680
     aatgaatgtt atagatgcga ttaacttcat gcgtactcag accggaaata acgtgaagat      1740
     gttcagatcg gataatgggg gcgagtacaa atgccaagaa ttggtatcct tcttctctaa      1800
     acgaggaata cgattcggtc tcaactcacc tcagtgcagt cccagtaatg gattcgtaga      1860
     acgtgaaatg cgaatcgaac aagatgcagc gaggtcaatg ctgatccaaa gtcagctgca      1920
     tgaatcgcac tgggaggatg caatccgaac tgcatgctac gtactcaaca gaaccttgag      1980
     tacgaaaaat acagaaaaaa ctccatacga acaagttata ggaaagaaac ctactttaca      2040
     gcatgttcgg atttttggga gtaaagcttt cgctcacata acaaatggac aaggaaagaa      2100
     attcgatgac aaagctacag aatgcatttt ggttggtttt gatgcgcatt caaagaacta      2160
     cattttgtat gatccagcgg aaggaaaata tcactaccaa gctaaacatg tgaattttat      2220
     cgaaacaaat gcttctcgaa gagagagcat tactaacgat gaacctgatg agattattac      2280
     tacattttct accgaagaag taagaaatga tgaaactgaa caaacagacg gggcaagtga      2340
     gacagaggat gaagaagctg agacttattc gtcagcaagc aattctccgc agcaaactaa      2400
     ccccaaagtt catcagcaca acgaaacatg ggcagatgag atacaatggg aagcatcaca      2460
     agaagaccgt aattttgtga acacctccct cccaccacag cccagttcct ctaaacccaa      2520
     aagggagagg caacaaagga agttttatca agccggcagc ggtgacgcaa atgtagctat      2580
     gcacgcaaca aacaccgagc caacaactta ttcagcagct ctcagctcta aatatgctgg      2640
     agagtggaag gaggcgatgg attctgaaat gagaagtcat tctgaaaatg gaacatggag      2700
     acttgtaaaa cgacccgtag gaaaaaaggt gctgaaaaac cggtgggttt ataaaattaa      2760
     gcacaatcca aacggtgaaa ttgagaaatt taaagcacgc ttagtggtga agggttttaa      2820
     ccaagtcaaa ggtgtagatt acactgaaac atttgcacca gttagcagat atgagacgat      2880
     cagaactttg ttgtctgtag cagcagcaag gaaattaaaa ttagtacaat tcgacatagg      2940
     aacagcttac ttgaattcag aactaaaaga agaagtatac atggaacaag ctgaaggtta      3000
     tgaaatcgga tctgatatgg tctacatatt ggacaaaacc ttatacggac tgccacaatc      3060
     aggacgggct tggttcgaga catttagcgc aaagctgaaa gaaatgggat atgtacaatc      3120
     caaaagcgac aaatgcttgt ttatgaaaac aacatccacg ggaaaaatat acgtagtaat      3180
     atacgttgac gatggactct ttgctggtaa aaacaaaaag gagttgcttg cagaaattga      3240
     gaagttaaaa gcttcattca aagttacaat tcaacccctt gtcagatttc tcggcattga      3300
     aatcttacaa gtggaggaag gaatattctt gcaccagacc aagtatatcg aggatttgct      3360
     tgagagattt ggaatgcaag attgcatcac actaccaatt cctatgcagc ctggtttgca      3420
     gtttgacggg agtgaatgtg acccaaattt agagtttcaa caactcattg gttcactatt      3480
     atttctagtg cgatgtacac gaccagatat tgcgtatgcc acgcattatt tatcccggtt      3540
     ttttgggagc tacaacaaac tacatatgaa tgcagcaaaa agaatcctgc aatacctaaa      3600
     agggacaaaa tctcttggta ttatgtacac tgaaagtgag gcagaccgag acgtcgtctg      3660
     tgcgtacgta gatgcagatt acggctccga cacaacttca cggaaatcaa catcgggtgt      3720
     attattcact cacaacaact ctcccatcgt gtggatgagt aagagacaaa cctgcataag      3780
     tttatccagt tgccaagctg aatatgtagc tttagctctc gctggaaaag aagcggtctg      3840
     ggtaaccaga ttatacttag agctagatat gatttcactg gaaaatgaac ctatctgtct      3900
     aaaaacggac agccagagtg caattagact ggcgaaaaat gatgaattcc acgacaaatc      3960
     aaaacacatt gacattaggc atcacttcat ccgagatctg gttgaaacaa accaagtcgt      4020
     attggagcat ttgcctgaca aagttcaacc tgctgatatt ttaaccaaat cagtggtgag      4080
     ggagtcgttt gagacgaaaa gatatttgat gggaatggtc cctcctcctc ctgcaaaggg      4140
     agagaagaga agagcactgt gcagtgttat tgtcaaccca aagcgaccca gtttattgtg      4200
     gagttttatg gctttattgc tctcattttt aactattgga gcaaccgatt tacacaaaga      4260
     gggaagtcct gttttgtgga gaaagagcta tgaaccagtg gtgatcggat ttcatgcgat      4320
     aaatatgaga atcgctttaa tttcaccatg cgaatttttg ccattggatg atttggaacc      4380
     cagaattgca aacatcatga aaaaacaatg tgaaaaagca tatgacgaaa tatttctaaa      4440
     taatttagaa gatatttgct ctccaccaca agggaggcga agacaaaaaa gagtaattcc      4500
     tgtcgttgtg ggatttattc ttgtcgcttg tgttggaagt gctgggatcg gactgggcag      4560
     ttatgcaata gcagagacac accgactaga aactcgacaa gacgaactag aatttgcttt      4620
     caataaactt gaaagacaag tttatgaaga ccgtcagcac ataaaagttc taaaaatgga      4680
     gataattaaa gttggttacc aagtccagca aacaatgaat gatttaaaca actttaagga      4740
     aggagttgta accatacaat atttaatctc ttacctcaca agtaaattgg ttgaggggag      4800
     aaaagtgatt tgggacacga aaaaagcatg gaagaaaaaa caaatgactc ctgacctttt      4860
     ggaatatctg aatttcactc tgccttgtgg agacgagtgt ccagtggagt ttggaatatt      4920
     tcacttatgc caaatgaaca aggagagaac tcaaataaat ttggatttct cggtgccaat      4980
     agtgaacaaa aatctcacta aactaacagc agatccgttt ttcttaatgt tgaaacgaga      5040
     taatttaacc tgtcgtatgg aatactcagg cccgactgtt gccacattgc atgtgggaga      5100
     agaatgtgtg tatgagactt attatgaaaa agctcacaac aacattgaaa tgacgacttc      5160
     aaacaagtgt cgaaatgaat cgtccttctc aaacggagga aaactctata agattgagaa      5220
     gtgtcagatt tcggcaattg gagatgaaaa agagtttgta caagtaaaaa tacttgacag      5280
     tctttatcat gtatattgtc caggaggaga gtacttggtg ggcaagagga gagtaaaatg      5340
     tccagacaaa gtattcacat tgccattatc tttgacattc actctgaacg aggttgaatt      5400
     caagggaaat atattacgtg tcgtctataa agagcgagaa gatcctcttt tttctgaact      5460
     cgtaaactgg cacttgaatc cgcgagtcaa ttggagtcat ttaagtgaag acttaaatga      5520
     aatctggaac acaaatgacg aacggattca aaaagaagcc aggaatctgc aggtgttctc      5580
     attcagcgat gacaattgga cagcatcaga aataacagtg ttaattttag ggatattatt      5640
     ttcactagta gtttttctgt gtgcaatagt atttcttgtc aagaaatgca atatgtgtcc      5700
     taaacggatt caacgccaag ctgaggagca gcctctcaag gagatcaatg gaccaagcaa      5760
     tcatattatt attcatacgt aaataattgt taaagggag                             5799
//
ID   Copia-2_FoCa-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-225
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2568-2568 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 225 BP; 75 A; 35 C; 40 G; 75 T; 0 other;
     tgttgaaaat aaccctgatt gtgtatgtta taatatgaat tatgtcgcta aatgtgcatc        60
     attgcacata cttgaccacc taatattatg ggtggataaa tgcatgcatg aaaagttgaa       120
     tgacttagat gatgatctta tatgtatgac aatgagctgc gtttaataaa tcagtagctg       180
     aaaatactcc aacagtcgag catctctctc cttatatttt gaaca                       225
//
ID   Copia-2_HeAr-I repbase;    DNA;    INV; 4060 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4060
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5548-5548 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..3976
FT                 /product="Copia-2_HeAr-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MASKNCDINIPIFDGTDYSNWKIRILKFLQFKKCKDV
FT                 VMRAKTEADKVEWDDKDVQATNYIYSAISNKQLEYVSELDSAYEIIKKFDQ
FT                 MYLKKSTALQIVCRHNLENIKLKNYSEVSLFFDAFEKAVNELKQAGAVVSE
FT                 TEKLNYMLKALPASYSYIGDLIDVLPEGEKTVDYLKSKIKLKHTENVSEVT
FT                 NDTSNTFKAEAKPSYNCFNCGKPGHLSRDCRSVNVYRGRGHSFYHNRGRGV
FT                 SNYRGRGLPNYRGHSYNHNNHRRRGSGNYHQNSPENPGNNFHTTIVHNSCT
FT                 TKEENTPENGQITWLLDSGCTDHIINSDKYFNTYETLTKPIKVKIGDGTIL
FT                 EATKIGNIKVYFLVCGQKSEVTLTNVFFVKEMKANLLSYSKITDKYSITSR
FT                 GKLTKIYDNYGKVIAIAIKDERLYKMKSYMCEEISQVNITKKDMTIKEKLH
FT                 RTLGHINFNNLELMCKNESLEGLPKEIEYEYLKCAICIENKMHNLPFQNNR
FT                 RRAEGILDIVHTDLNGPHXTTGYNGEKYFLSFIDDYSKLVKVYCIRSKDEV
FT                 YDYLVQYVNEVQNLTGKTVKELRCDNGREYINARLFQFAKEKGMIIRPCPA
FT                 YVHQLNGTAERYNRTLMDMGRCLLAEAKVERRXWPEVIKTAAYLKNRTLTN
FT                 TIERKTPYEIFFRRKPSVQNLKMYGSKVFVRIPEERRRSKWDKKAEVGILL
FT                 GYTDTGYRVLIKNRVIIARNCDVIEEDVKLCGIENEEENNNESNTKEIEKE
FT                 NKKTEEESDKVENLEKDETSVVEXKDKEQNRHSARQVKPPVRFDEEFGYYC
FT                 IYCNYCDASAPSNFQEATSCNEAMQWKEAMNREMDSLMKNNTWTLVNKPPK
FT                 DKKVIDVKWVYKKKSENEYKARLVVRGFQQTNCIDDTYSPVAKMPTLKLLL
FT                 SYCCQNSLIIHQMDVETAFLNGKVLSEVYVKQPIGYENGTDKVYKLNKSLY
FT                 GLKESPRAWYECFNDFLTNFGFCRSKYDYCLYVRKDNNITVYILLFVDDLL
FT                 ICCESVEVITDIKTKLSERFKMKDIGKVKNYIGIEIEYMYNQNNVLTLSQK
FT                 SYIESLAKRYNIENSKLFKTPMEINLKLTQCDVNEDVKYRNLIGALLYISS
FT                 GTRPDISYSVNYLSRFQNCYNETHFKYALRVLKYLYLTKDLKLTYCNNSNT
FT                 DIVDCFVDADWAGDILDRKSTTGFVIRLFGNIIYWKSKKQSSVTKSSTFAE
FT                 YVALSEAVTELNFLVCLINEVFTKVCKPVNIYEDNSGAVAISKYGNFTKNS
FT                 KYIEVHYHFIHENVKQGRINVVKIESENNIADIFTKALGNVKFIKFREMLN
FT                 LK"
XX
SQ   Sequence 4060 BP; 1583 A; 454 C; 794 G; 1220 T; 9 other;
     tggtagcaga cagtggttgc aaaaatagaa aaagatggct tcgaaaaatt gtgatataaa        60
     tattcccata tttgatggca cggattatag caactggaaa ataagaattc tcaagtttct       120
     gcaattcaaa aaatgtaagg atgtcgttat gagagcgaaa actgaagccg acaaagttga       180
     gtgggacgac aaagatgtcc aagcaacgaa ttacatatat agtgcaataa gcaacaagca       240
     gttggaatat gtaagtgaac ttgattcagc ctacgaaata ataaagaaat tcgaccagat       300
     gtatttaaag aagtcwacag cgttacaaat agtgtgcaga cataatctcg aaaatattaa       360
     attgaaaaat tactctgaag tgtctctatt tttcgatgcg tttgaaaaag ctgtaaacga       420
     gttaaaacaa gcaggtgcag tggtatctga aacagaaaag ctgaattata tgttaaaggc       480
     actaccagcg agttacagct atataggtga tctgattgac gtcttgccgg agggtgaaaa       540
     gacagtagac tatttaaaaa gtaaaataaa gttgaaacat acagaaaacg taagtgaagt       600
     tacaaatgat acatcaaata cttttaaggc agaagccaag ccatcatata attgttttaa       660
     ttgtggaaaa cctggccacc taagccgaga ttgtagatct gtaaatgtat accgtggtcg       720
     aggacatagt ttttaccata accgaggacg tggtgtktca aattatagag gacgtggttt       780
     gccaaattat cgtggacatt catataatca taataatcat agaagacgag gttcaggaaa       840
     ttatcaccag aatagtccgg aaaatccagg taacaacttt cacactacta ttgtacacaa       900
     tagttgcaca acgaaggagg agaatacacc tgagaatggt caaataactt ggttgttgga       960
     tagtggctgc acagaccata ttattaatag tgacaagtac ttcaacactt atgagacatt      1020
     aactaaacct attaaagtta aaattgggga tggaacaata ttagaggcta caaaaattgg      1080
     taacattaaa gtttattttt tagtctgtgg acagaaatct gaagtgactt tgacaaatgt      1140
     attttttgta aaagaaatga aagcaaattt attgagttat tctaaaatta ctgataaata      1200
     ttcaattaca tcaagaggaa agttgacaaa aatttacgac aattatggga aggttatagc      1260
     aattgcaatt aaggatgaaa gactatataa gatgaaaagt tacatgtgtg aagaaatatc      1320
     gcaagtaaat ataactaaaa aggatatgac aataaaagaa aaactacatc gtactttggg      1380
     ccatataaat tttaataatt tggagttaat gtgtaaaaat gaatcattag aaggattacc      1440
     taaagagatt gaatatgaat atttaaaatg tgccatatgt attgaaaata aaatgcataa      1500
     cctaccattt caaaataatc gccgaagagc agagggtata ttggatatag tacatacaga      1560
     tttgaatggg ccacatcasa ctacgggata taatggagaa aaatattttt tgagctttat      1620
     tgatgattat agcaaattgg tcaaagttta ttgtattcgg tcaaaggatg aggtatatga      1680
     ctacttggtg caatatgtta atgaggtaca gaacttgaca ggaaagacag taaaggaact      1740
     acggtgtgat aatggaagag aatatattaa tgctagattg tttcagttcg cgaaggagaa      1800
     aggaatgatt ataaggcctt gtccagcata tgttcatcag ttgaatggaa cagcagaacg      1860
     gtataatmga acactaatgg atatgggtcg wtgtctttta gckgaggcca aagtggaaag      1920
     aagatwttgg ccagaagtaa ttaaaacagc tgcttacctt aagaatagaa ccttaacaaa      1980
     tactatagag agaaaaacac catatgaaat attttttaga aggaagccat ctgttcaaaa      2040
     tttaaaaatg tatggaagta aagtttttgt aagaattccg gaagaacgga gaagatctaa      2100
     atgggataag aaagctgaag ttggaatttt acttggttat actgatactg gatacagagt      2160
     gttgattaaa aacagagtta ttattgctag aaattgtgat gtaatagagg aagatgttaa      2220
     attatgtggt attgaaaatg aggaagaaaa taataatgag agtaatacaa aagaaattga      2280
     aaaggaaaat aaaaagactg aggaggaatc agataaggta gaaaacttgg aaaaagatga      2340
     aacaagtgta gtagaaagka aagataaaga gcaaaataga cattcagcaa gacaagtcaa      2400
     acctccagtt cgttttgatg aagaattcgg ttattattgc atatactgta actattgtga      2460
     tgcttcggca ccatctaatt ttcaggaagc aacttcatgt aatgaggcaa tgcagtggaa      2520
     agaagcaatg aatcgagaga tggatagttt aatgaaaaat aacacgtgga ctctagttaa      2580
     caaacctccc aaagacaaaa aggtaattga tgtaaagtgg gtgtacaaga agaagagtga      2640
     aaatgagtat aaagcaaggt tagtagttag aggttttcaa caaacaaact gtattgatga      2700
     cacatattct cctgttgcta aaatgccgac acttaaacta ttattatctt attgttgtca      2760
     aaattctttg attatacatc aaatggatgt ggaaactgct tttcttaatg gtaaagtatt      2820
     atctgaagtt tatgtaaagc aaccaattgg ctatgaaaat ggtactgata aagtctataa      2880
     attaaataaa tcattatatg gtttaaagga aagcccccgg gcatggtatg aatgttttaa      2940
     tgatttctta actaattttg gtttttgcag aagtaaatat gactattgtt tgtatgttag      3000
     aaaagataac aatataactg tttatattct tctatttgta gacgatttat tgatatgttg      3060
     tgaaagtgta gaagttatta ctgacataaa aactaaatta tctgaaaggt ttaaaatgaa      3120
     ggatattggt aaagtaaaaa attatattgg tattgagatt gagtacatgt ataatcaaaa      3180
     taatgtctta actttgagtc agaaatctta tatagagtca ttagctaaac gttataatat      3240
     tgaaaattct aaattgttta aaactcctat ggaaattaat ttaaaattga cacaatgtga      3300
     tgtaaatgaa gatgttaagt atagaaattt gattggtgca cttttatata ttagttcagg      3360
     tactaggcct gatatatcct acagtgttaa ttatttaagt agatttcaaa actgttataa      3420
     cgaaacacat tttaagtatg ctttgagagt attaaaatat ttgtatttga caaaagatct      3480
     taagttaaca tattgtaata atagtaacac tgatattgta gattgttttg tggatgctga      3540
     ttgggcagga gacattttag atagaaagtc tactactgga tttgtcatta gattatttgg      3600
     aaatattata tactggaaat caaagaaaca aagtagtgta acaaagtctt caacatttgc      3660
     tgaatatgta gccttatcag aagcagtaac agaattaaat tttcttgttt gtttaattaa      3720
     tgaagtcttt actaaagttt gtaaaccagt taacatttat gaagataatt caggagctgt      3780
     agctatttca aaatatggaa actttacaaa gaattctaaa tatattgaag ttcattatca      3840
     ttttatacat gaaaatgtta agcaaggaag aattaatgtt gtaaaaatag agtctgaaaa      3900
     taatattgct gatatattta caaaagcttt gggaaatgtt aaattcatta aatttagaga      3960
     aatgttaaat ttaaagtagt taaaagtttg taaactgatt aggtataact attgtaagaa      4020
     actttgtgkt aatgtttaga aatataaatg taaggaggcg                            4060
//
ID   Copia-2_HeAr-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5537-5537 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 206 BP; 62 A; 27 C; 29 G; 83 T; 5 other;
     tgttagtatc tgtggtacat ttatatttct tctgtattag ttatggtatc actctgttgt        60
     ctattgccaa tgttctctct cctcgccacg tttatctktg tgttctwwgt cakattawaa       120
     tattaagtat taagtaataa tgtacgtcct aggtaatatt aaagtgaaaa taaaagatga       180
     ttaaaaacaa gatatttatt ttaaca                                            206
//
ID   Copia-2_Hm  repbase;    DNA;    INV; 1262 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene.
XX
KW   LTR Retrotransposon; Transposable Element; Copia; Copia-2_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1262
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           212..1261
FT                 /product="Copia-2_Hm_1p"
FT                 /translation="NLTMSTNYFVNVPKLTGRNNYSEWCFAAENFLILEGT
FT                 KHCVWPEEGKEITADDAKTKAKLIMTIDPSLYVHVKNVKTSSELWNKLKQL
FT                 FDDNGFSRRISLLRNLISIRRENCNSMTSYVTQIIDTAQKLSGTGFEINDQ
FT                 WTGSLLLAGLPDRFSPMIMAIEHSGIPITADSIKTKLLDMDLASYDENEAS
FT                 GAFAIHSKYRGKQNSNLSMARKSDVGNTTLPTSNVKQIKCYRCKQFGHYKN
FT                 QCTNNENNSSNKKINKERVQSNAFSAVFLSGNFYKDEWYIDSGASMHLTAN
FT                 ESWVINAQYEQCKEIVVANSEKVSVSCTGDVKITTVTDNREYDIIVENVFC
FT                 VPSLTTN"
XX
SQ   Sequence 1262 BP; 457 A; 200 C; 261 G; 343 T; 1 other;
     tgttgtaatg atatctaaaa taaaaagaaa aataaataaa caagtgactg tttattagct        60
     gtcattgaaa agagacgttg ttttattata ggttatgggc ccgcgctcat aaatttcgcg       120
     attttgtaat tttaacaaga attttgcatc gcaagtgtta aaggataatt acaagtattt       180
     tgcagattat aacagtgtat attcctattg aaatttaaca atgtcgacaa actattttgt       240
     gaacgtacca aagctaacgg ggcgtaataa ttatagtgag tggtgtttcg cggcagaaaa       300
     ttttctaatc ttggaaggca ctaagcactg cgtgtggcca gaagaaggaa aagaaataac       360
     tgcagatgac gcaaaaacaa aagccaaact aataatgaca atcgacccgt ctctgtacgt       420
     acatgtaaaa aacgttaaaa cttcaagtga attgtggaat aagcttaaac aacttttcga       480
     tgataacgga ttttcacgta gaataagtct actaaggaat ttaatttcga ttcgccgaga       540
     gaattgcaat tcgatgacgt catacgtgac gcagattatt gatactgcac agaagctcag       600
     cggaacagga tttgaaataa atgaccagtg gacaggatca ttgctgttgg cgggattgcc       660
     tgatcgtttc tcccctatga ttatggcaat agagcactca ggaataccta ttacagcaga       720
     ttccatcaaa acgaaattgc tggatatgga tttggcaagt tatgatgaga atgaagctag       780
     tggtgctttt gcaattcatt ctaagtacag aggaaaacaa aattcgaatt tatctatggc       840
     cagaaaaagt gacgtaggca acactacttt accgacgtca aacgtcaaac agataaagtg       900
     ctatcgatgt aaacagttcg gccattataa aaaccaatgt acaaataatg aaaataactc       960
     gtcaaataag aaaataaata aggaaagagt gcagtcaaat gcttttagcg cagtgtttct      1020
     gagtggaaat ttctacaaag atgaatggta tatcgactct ggcgcgagta tgcatcttac      1080
     agcaaatgaa agttgggtta taaatgcaca gtatgaacaa tgcaaagaaa ttgttgttgc      1140
     aaatagtgaa aaggtctcag tatcgtgtac tggcgatgta aaaataacga cagtaacgga      1200
     caaccgtgaa tacgacatca tagtggaaaa cgtattctgy gtaccaagtc tcaccacgaa      1260
     tt                                                                     1262
//
ID   Copia-2_LH-I repbase;    DNA;    INV; 4251 BP.
XX
AC   ADOQ01002919;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_LH_;
KW   Copia-2_LH-LTR; Copia-2_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4251
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002919; Positions    5554    1304.
XX
CC   Positions [1590-2087] - Integrase core
CC   'CAATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1680
FT                 /product="Copia-2_LH-I_1p"
FT                 /translation="MNLSGNARIEALSKDNYDTWKIQMQAVLVKNDAWDYV
FT                 NGQKAKPQTTAGDAASVAAARAWTDRDDKAKSDLILAINPSELKQIKGCET
FT                 SHDVWVKLENIYQSKGPARKATLLKQLTLHKMKDGDDIREHARRFFDAVDK
FT                 LSEMDVQINPDLLAIMLLYSLPPSFENFRCAIESRDDLPAPETLRIKIIEE
FT                 SDARNSARSTDTGQEALIIEKKRATKKTQNAKTDPKDKKFKGKCYKCGKIG
FT                 HKAPECKMDKDKRPASDTEKVSLYAELENDEQAAFRSSSDDLEQKWCLDSG
FT                 CTSHLCNNEDEFIGLNDANLGRLNLASNTSTDIKGKGSVNFLVKTGDRFNH
FT                 VLLNDALHIPELRMNLMSVAKITDRGFKVIFDNRKAEIIDSSNQIKITAKR
FT                 EKNLYFVHGKPARGKREIETSNQAEVGFLKLWHDRLGHLNVRDLREAIEKG
FT                 KISGIRQMDLKGTLDCEICIQGKMARPVFPKESERKTKILISFIQTSAGLC
FT                 AHYRTAEQSILSRL"
FT   CDS           1635..4250
FT                 /product="Copia-2_LH-I_2p"
FT                 /translation="MRSLSNSGAKYFVTFIDDSTRWCEVRFVKGKDEVLKE
FT                 FKSYKALMENKHGTKIKGIQSDNGREYINHEFEEFLKSNGIEHRTSAPYTP
FT                 QQNGVAERFNRTLVEAARCSLLQSNLPSSFWAEAISTACYVRNRCPTKALQ
FT                 GKTPYESRLGYIPNVSYFKRFGCVAYCLNKLPTKGKFHARAKKGVLLGYSS
FT                 TSKAYRIWLPAEKKVEITRDVKFIEKSDPRLEGTSTDFIPEDYKEASQDHN
FT                 DYRTEVDLRLNESVENHQNIDPVEIEEDEQYDEQNDEEEEENPRPVTRARG
FT                 RGRPSIIRTGRPGRPRKEYHEAVIAEDELEQAYTGEIIVKEALSGPEVSEW
FT                 MDAMASEVKSLLKMNTWELVERPEECKIIGSRIVLRNKYDSNGQVERRKAR
FT                 LVAQGCSQSPGIDFDETYAPVARLSSVRLATALAARYDMNIRQLDIATAYL
FT                 NGKINEKVYMRIPKYYVEILEFIISTGHCDPDICKKARGMLDRLRSGNKVC
FT                 LIKRALYGLRQAGRSWYAKINEELQRLGAKASKFDPCMYYTGSGEDLTLIV
FT                 VYVDDILVMSRSTDQIEKVHRYLSRRFDIRDIGKAEYCLSLEFTREEGSIT
FT                 LTQKGYVKDVLARFGISDCNPISTPFNPGVKLAKKEDRTSEDDARFPYREL
FT                 IGSLMYLGVGTKPDIAYLVSHLSQFNNCYDETHWAAAKRVLRYLKGTINCG
FT                 LTYKFGKTPLVGFADADWASCIMDRRSYTGFVFALSGAAITWDSKKQRTVA
FT                 LSSTEAEYMALSEAAKESIYLRGFLTELGVNVNENIVIICDNMGAQSLGKN
FT                 PIYHSRTKHIDVRHHFVREVLEDGIIKVEYTPTTEMAADILTKGLPKQKHY
FT                 SCINDLGLRNTLREASRGE"
XX
SQ   Sequence 4251 BP; 1354 A; 953 C; 1126 G; 818 T; 0 other;
     ggttatgggc ccagaaagcg gttcatacgc gggacattcg tagaaatctt aagacgcgat        60
     agcgtaacct caaaaaggga aaggaaagcg ctgtgtgtat gtcgtcgttt cttgctgtag       120
     ctcagaaagc cctcgaaaca aagtgcagtg atgaatctga gcgggaatgc acgaatagaa       180
     gcgctatcaa aggacaacta tgacacttgg aagatccaaa tgcaagctgt gctcgtcaaa       240
     aacgatgcgt gggactacgt gaacggacaa aaagcgaaac ctcagaccac agccggcgat       300
     gccgcatcgg tcgcggcggc acgagcgtgg acagatcgag atgacaaagc caagtcggat       360
     ttaatacttg cgataaatcc ctcagagctg aagcaaataa aaggttgcga aacatcgcac       420
     gacgtgtggg taaaactaga aaatatttat cagtcgaaag gaccggcaag gaaggcaacg       480
     ttgctaaagc aattaacgct tcacaaaatg aaagacggcg acgatattcg cgaacatgca       540
     cgaaggttct tcgacgcagt ggacaagctt tcggaaatgg acgttcaaat taatcccgat       600
     ctactcgcga ttatgctctt atacagtttg ccaccgagtt ttgaaaattt tcgctgtgca       660
     atcgagtcgc gtgatgacct cccggcgcca gagacactac gcatcaaaat catcgaagag       720
     agtgatgcga gaaacagtgc gcgtagtacg gatacgggac aagaagcgct gataatcgag       780
     aaaaagcggg ctacgaaaaa gacacaaaat gcgaaaaccg atccgaaaga caaaaagttc       840
     aaaggaaaat gctacaaatg cggtaaaatc ggtcataagg caccggaatg caaaatggac       900
     aaagacaagc gacccgcgag cgacaccgag aaagtcagcc tttacgccga actcgaaaac       960
     gacgaacagg cggcgtttcg cagcagcagc gacgatttgg aacaaaagtg gtgtctcgac      1020
     agtgggtgca cgtcgcacct atgcaacaac gaagacgaat ttatcggatt gaacgacgcc      1080
     aacctcggca gattgaatct tgcgagtaac acgtcaaccg atatcaaggg taagggctcg      1140
     gtaaatttct tagtgaaaac gggcgacaga ttcaaccacg ttttgttaaa cgacgcatta      1200
     cacattccgg aacttcgtat gaatttgatg tccgtcgcga aaatcaccga ccgcggattc      1260
     aaagtaatct tcgacaatcg gaaggcggaa attatagatt cgagtaatca aataaaaata      1320
     accgcgaaac gcgaaaagaa cctatatttc gtgcacggta aacccgcgag agggaaacgc      1380
     gaaatcgaaa cgtcgaacca agctgaagtc ggttttctga aactgtggca cgataggctc      1440
     gggcatctaa acgtgcgcga tttacgcgag gccatcgaaa agggaaaaat aagcggaata      1500
     aggcagatgg acctaaaggg gacattagac tgcgagatat gtatccaagg taaaatggct      1560
     aggcccgtgt tcccaaaaga atcggaaagg aagacaaaaa tcctcatctc attcatacag      1620
     acgtctgcgg gcctatgcgc tcattatcga acagcggagc aaagtatttt gtcacgttta      1680
     tagacgacag caccaggtgg tgcgaagtgc ggtttgttaa aggcaaggac gaagttctga      1740
     aagagttcaa gtcatacaaa gcactaatgg aaaacaagca cgggacgaaa atcaagggaa      1800
     ttcagtcgga caacgggcgc gagtacatca atcatgaatt cgaggaattc ctgaagtcaa      1860
     acggaatcga gcatagaaca agcgcaccgt atacgccgca gcaaaacgga gtcgccgaga      1920
     ggttcaacag gacgctcgta gaagcggcga gatgctcatt gctgcaatcg aacctaccgt      1980
     catccttctg ggctgaggca atatcgacgg cgtgctacgt gcggaatcga tgcccaacca      2040
     aggcgcttca ggggaagacg ccgtacgaat cacgtcttgg ctacattccg aacgtaagct      2100
     atttcaaaag gttcggctgc gtcgcatatt gtctgaacaa gcttcctacg aaggggaagt      2160
     tccatgcccg cgcaaagaaa ggcgtccttc tgggttactc aagcacttcg aaggcataca      2220
     gaatttggct acctgcagag aagaaagtgg aaatcacgcg cgacgtcaaa ttcatcgaaa      2280
     agtcggatcc gagactcgag ggtacatcaa ccgatttcat cccggaagat tacaaggaag      2340
     caagtcaaga tcataacgac taccgcactg aggtcgactt aagactgaac gaaagcgtcg      2400
     agaatcatca aaacatcgat ccggtagaga tcgaagaaga cgagcaatac gatgagcaaa      2460
     acgacgagga agaggaggaa aatcccagac cagtgactcg agcgcgcgga cgaggacgac      2520
     cgagtattat acgtacggga cgacccggta gacccagaaa agaataccat gaagcggtca      2580
     tcgccgaaga cgaattggaa caagcgtaca caggcgagat aatcgttaaa gaagctctgt      2640
     ctgggccgga ggtgtccgag tggatggacg ccatggcctc cgaggtgaag tcgctattaa      2700
     aaatgaatac ttgggaactc gtcgaacgtc cggaggaatg taagatcatc ggcagcagaa      2760
     ttgtgctccg gaacaaatac gactccaacg ggcaagttga acgtagaaaa gcgcgcctcg      2820
     tcgctcaggg ttgttcacaa tctccaggga tagatttcga cgagacatac gctcccgtcg      2880
     caaggttgag ttccgttcgc ctagcaaccg ctttagccgc acggtacgac atgaacatta      2940
     gacaactcga catagcaact gcatatttaa atggaaaaat caacgaaaag gtctatatgc      3000
     gaattccgaa gtactacgtc gagatcctag aattcatcat atcaacaggg cattgcgatc      3060
     cggacatttg caagaaagca agagggatgt tagatcggtt gcgtagtgga aacaaggttt      3120
     gcttgatcaa aagggcgctc tacggacttc gacaggccgg gcgcagttgg tacgcaaaga      3180
     tcaacgaaga gctgcagaga cttggagcga aagcttcgaa gttcgacccc tgcatgtatt      3240
     acacgggatc aggggaagat ctgacactaa tagtcgtgta tgtcgacgac atcctcgtta      3300
     tgtcgcgaag cacggatcag atcgaaaagg tgcatcgata tctctcgagg cgtttcgaca      3360
     taagggacat cggaaaagcc gaatactgct tgagcctgga atttacacga gaggaagggt      3420
     ccataactct gacacaaaaa ggatacgtca aggacgtgct cgctcgtttc ggtataagtg      3480
     actgcaatcc aatttcaaca ccctttaacc caggggtcaa attggcaaag aaggaagata      3540
     gaacgagcga agacgacgcg aggtttccat acagagaact catcggatcg ctaatgtact      3600
     tgggagtcgg aacaaaaccg gacatagcat acttggttag tcacctaagt cagttcaata      3660
     actgttacga tgagactcac tgggcggcag ccaaaagagt actgcggtat ctcaagggaa      3720
     caatcaactg tggcttgaca tacaaattcg gcaagactcc actagttggg ttcgcggatg      3780
     ctgattgggc gagctgcatt atggacagaa gatcgtatac aggtttcgtt tttgcgctaa      3840
     gcggcgcagc gatcacatgg gactcgaaga agcaacggac cgtcgccctt agctcgaccg      3900
     aggcggaata catggccttg tcggaggcgg caaaggagtc aatctacttg agaggattcc      3960
     ttactgaact aggagttaac gtcaatgaaa atatcgtaat aatatgcgat aacatgggag      4020
     cacagagcct cgggaagaat ccgatctatc atagccggac gaagcacatc gacgtcaggc      4080
     accatttcgt ccgggaagtt ctggaggatg gaatcataaa ggtcgaatac actccaacga      4140
     ccgaaatggc ggccgacata ctaacgaagg gactgccgaa gcagaagcac tattcatgca      4200
     tcaacgatct cggactgcga aatactctcc gggaagcgtc tcgaggggaa g               4251
//
ID   Copia-2_LH-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   ADOQ01002919;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_LH_;
KW   Copia-2_LH-I; Copia-2_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-277
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002919; Positions    1303    1027.
XX
SQ   Sequence 277 BP; 68 A; 74 C; 56 G; 79 T; 0 other;
     tgtgagaact agattacgat ccgctctcct cgtttgtatg gttctcgcta aaccatattt        60
     accgcgttct ttttatcttc gcgatcgagg gcgcacgttc aataaagcca agcgcgccac       120
     cttctggtat atccgagtta ccgcgaatct acctcacgtc gcgtatagtg ttctcgtacg       180
     tgtaagaaaa gcaataaagc aatatttcta caagaataaa ttacggcaag gcgtgttcat       240
     ttacgatccc cggtccctgc cccgttttcc ggcaaca                                277
//
ID   Copia-2_LMi-I repbase;    DNA;    INV; 4159 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4159
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3075-3075 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..1492
FT                 /product="Copia-2_LMi-I_1p"
FT                 /translation="MAGEAEEISSVTKLKNSESYDMWNFELKILLEAKKLW
FT                 SIVSGKDLLSHHTSEDTKNEWITKDAKAKHFILRTSEKNVKIHVMACKTSK
FT                 EMYDVLTKIYKSDTVEQKCQLQAQLFSISWVKGATVMDNITGVENIVQRLR
FT                 TLGEEISEEMTITKILTILPEEYKHFRSAWDSTRKEDRNLENLKSRLMKEE
FT                 QQFKFGARQDDSNVAFKVEVKKKSDGKFRMKCYNCQEFGHTKFHCPLKEKY
FT                 CQTCKKNNHSDEECFSKRKQYNVGASSKIKCMYCKKTNHDSSVCFFKNEHE
FT                 NKIGRKKTDKAAFSAECYTSEVIKTSTHAEFVVDSGANCHTVNNCNILTDI
FT                 KNTSPVTIKVAKKDNVMQSSVVGKVDTQNVILNDVSFVEDLSRNLLSVNKV
FT                 TENDGEVLFKKNEVMIVKNNKTVLQGFKNENGLHVIDFTTNIETFASEKEN
FT                 VTQMWHRKMGHIGEKIEIVTFLV"
FT   CDS           join(1904..2164,2237..4039)
FT                 /product="Copia-2_LMi-I_2p"
FT                 /translation="MNRTLVNKTRALLFDSGLDNEMWGEAILTSAYLQNRS
FT                 PTSTSPVTPAEMWYQRRPDLSNIEIFGSEVMYKILGPLNKLKARAEKAVLH
FT                 FWERRREKKTANHMNTLLWKLMKKRSKKKIKNNQQMTVILKIHLIEMKMKT
FT                 SNETDESQETEERQETEHQRPQRERRLPAKYQDYIMYNEHEEEALLTMEEC
FT                 LKKPDKDKWKAAIEEEKNSIKTNNVWVLVDENQAKRKEVVTSRWIFKVKDG
FT                 NRYKARLVARGCQQNDDYLDFEDTYSAVVQTTSVRILLALTAHFNYKVITF
FT                 DVKSAFLHGQLKEEIFMKVPEGYYHPGKVCLLQKALYGLKQAPLQWNIRLT
FT                 NFLINVGMKQLKTDRCVFVKKIGSSVIYIAFHVDDGLVVGNDLKEMNNLMI
FT                 KLKENFDATVNENPNNYLGMELIRTENGVGLCQESYAKKVLEKYYMTEAKP
FT                 RKVPLLFNKNCKEKQIKSEFPYREAVGSLLYLSCKTRPDLAYAINFESRSV
FT                 NNPTKEDINNVKNTLRYLKGSQKTGILYKSDVNKKSVSVEAYCDADFAGDL
FT                 KDRKSTSGYVIFIAGGPVVWNSKKQSIVALSTTEAEYISAAECVKDLKFVK
FT                 TMLEELTDNLIDTTLYVDNQSAIKLIKSGQMSRRSKHIDVKYHYVSQLLKE
FT                 GVFNLQYCKSDEQVADIFTKPLTTEKFEKYRKILCNEND"
XX
SQ   Sequence 4159 BP; 1673 A; 542 C; 849 G; 1094 T; 1 other;
     ggttatgggc ccagaacagt gaaaagtgcg gttatctgtg caaaatacat taaataaaac        60
     tgtcagaagg ataaaatatt tttaaaaaat ggctggtgaa gcagaagaaa tatcaagtgt       120
     taccaaactg aaaaactctg aatcgtatga tatgtggaat ttcgagctaa aaatattact       180
     tgaagcaaag aaactgtgga gtattgttag tggaaaggat ttactgagtc atcatacttc       240
     tgaagatacg aaaaatgaat ggataacaaa agatgcaaag gcgaaacatt tcatacttag       300
     gacaagtgag aagaacgtaa aaatacatgt tatggcttgt aaaacatcca aagaaatgta       360
     tgatgtgtta accaaaatat acaaaagtga tacagtggag caaaaatgtc aattacaagc       420
     acagctcttc agtatatctt gggtaaaggg tgctactgtt atggacaata ttactggagt       480
     tgaaaatata gtgcagagac ttcggacttt gggtgaagag atcagtgaag aaatgacaat       540
     aacaaaaata ttgactattt taccagaaga atataaacat ttccgttctg cctgggattc       600
     aaccagaaaa gaagatagaa atttggaaaa tcttaagtcc agactcatga aagaagaaca       660
     gcaattcaag tttggagcca gacaagatga tagtaatgta gcctttaaag tggaagtaaa       720
     aaagaagtca gatggaaagt tcagaatgaa atgttacaac tgccaggaat ttggtcatac       780
     aaaatttcac tgtccattaa aagaaaagta ctgccagacc tgtaagaaaa acaatcactc       840
     agatgaagaa tgtttcagta aaaggaaaca atacaatgtt ggtgcttcaa gtaaaattaa       900
     atgtatgtac tgcaagaaaa caaatcatga ttcaagtgta tgtttcttca agaatgaaca       960
     tgaaaataaa attggaagaa agaagacaga caaggcagca ttttctgcag agtgttatac      1020
     aagtgaagtg ataaaaacta gtacacatgc tgaatttgtt gtagacagtg gagctaactg      1080
     ccatacggtt aataattgta atattttaac agacattaag aatacaagtc ctgttacaat      1140
     taaagtggca aaaaaggata atgtcatgca aagcagtgtt gttggaaaag ttgacacaca      1200
     aaatgtgatt ttaaatgatg tctcttttgt ggaagatttg tcaagaaact tactgtctgt      1260
     gaataaagtg acagaaaatg atggagaagt actatttaag aagaatgaag tcatgattgt      1320
     gaaaaacaat aaaactgtgc tgcaaggatt taagaatgaa aatggactgc atgtgattga      1380
     ttttacaacc aatatagaaa catttgcatc tgaaaaagaa aatgtgactc aaatgtggca      1440
     cagaaaaatg ggccatattg gtgaaaaaat tgaaattgtt accttccttg tgtagtggtg      1500
     tkcctaatac atttgatgct agtcaagaaa ataaatgtga aatatgcatc aaggcaaaac      1560
     acattaaaat cctttttcaa aagaaagaca gcatgctaaa agacctctaa gattatacat      1620
     actgatgttg tggtaaaatg ctccaccaac atatggaata ctatttcatg gtgtgtatag      1680
     atgattatcc actttgtatg gtgtatttgc taagtaagag tgaagccaca gaaattgaaa      1740
     aattatgtgt atgaagcaga acacacttta acttgaaagt gtaaaattaa ctggataatg      1800
     gagcgaatac agaagcaaag aattagaatg gtgcaaaagt aagggaatac aacttgatac      1860
     actattccgt tacactcctg agctaaatgg tactgcagaa agaatgaaca gaacacttgt      1920
     gaataaaaca agagcattgc tgtttgactc tggcttagac aatgaaatgt ggggagaagc      1980
     aatattgaca tcagcatatc tgcaaaacag aagtccaact tcaacttctc ctgtcacacc      2040
     tgcagaaatg tggtaccaaa gaagaccaga tctgtcaaat attgagatat ttgggtctga      2100
     agtaatgtat aaaatacttg gaccattaaa taaactaaaa gcaagagctg aaaaagcagt      2160
     tttgtaggat attcacaaaa tggttataga ctgtggaata caaaagaaag acaaatattt      2220
     gtggcaagag atgtaacatt tttgggaacg aagaagagag aagaagacag caaaccatat      2280
     gaatacatta ctgtggaaac ttatgaagaa gaggagcaag aagaaaatca agaacaatca      2340
     gcaaatgaca gtaattctga aaatacacct gatagagatg aaaatgaaga ccagcaatga      2400
     aactgatgaa agccaagaaa ctgaagaaag acaagaaact gaacaccaaa gaccacaaag      2460
     agaaagaaga ctcccagcaa aataccaaga ttatatcatg tataatgaac atgaagaaga      2520
     agccctgtta acaatggaag agtgcttgaa gaaaccagat aaagacaaat ggaaagcagc      2580
     tatcgaagaa gaaaagaact ctattaaaac taacaatgtg tgggtgttag ttgatgaaaa      2640
     ccaagcaaaa cggaaagagg tagttactag tcgttggata tttaaagtta aagatggaaa      2700
     tcgatataaa gcaagattgg tagcacgagg atgtcagcaa aatgatgatt acttagattt      2760
     tgaagataca tatagtgcag tggtacaaac aacttcagtg agaattctgt tagctttaac      2820
     agctcacttc aattacaaag tgataacctt tgatgtaaaa tctgcattct tgcatggcca      2880
     attaaaagaa gaaatattta tgaaagtgcc agagggttac taccatcctg gtaaggtgtg      2940
     tctcttgcaa aaggcattgt atggactgaa acaggcacca ttacaatgga atataagact      3000
     gacaaatttt ttgattaatg taggcatgaa acaactaaaa acagatagat gtgtttttgt      3060
     aaagaaaatt ggcagctcgg ttatatacat tgcatttcat gttgatgatg gtttagttgt      3120
     gggaaatgat ttgaaagaga tgaacaactt aatgataaaa ctgaaggaaa actttgatgc      3180
     aactgtgaat gaaaatccaa acaattatct tggaatggaa ttgataagaa cagaaaatgg      3240
     tgttggattg tgtcaagaat cttatgctaa aaaagtcctg gaaaagtatt atatgacaga      3300
     agcaaaacca agaaaagtac ctttgctgtt taacaagaac tgtaaagaaa aacaaataaa      3360
     aagtgaattt ccatatagag aagcagtggg tagtctgttg tatctttcat gtaagacacg      3420
     accagacttg gcatatgcaa ttaactttga aagtagatct gtgaataacc caacaaaaga      3480
     agacataaat aatgtgaaga ataccctgag atatttaaaa ggaagccaaa agacaggaat      3540
     actctacaag tccgacgtaa ataagaaaag tgtatcagtt gaagcatatt gtgatgcaga      3600
     cttcgcaggt gatttaaaag acaggaagag tacaagtggc tatgtgatat ttattgcagg      3660
     aggaccagta gtgtggaatt caaagaaaca aagtattgta gccttatcga ctacagaagc      3720
     agaatatata tcagctgcag aatgtgtaaa agatctgaag tttgtaaaga caatgttaga      3780
     ggaactaaca gacaatttaa ttgatactac tttgtatgtt gataatcaaa gtgccataaa      3840
     actaatcaaa tctggtcaaa tgagtagacg tagtaaacat attgatgtga aatatcacta      3900
     tgtaagtcaa ttgttgaaag aaggtgtatt caatctccag tattgtaaat cagatgaaca      3960
     agttgcagat attttcacaa aacctttgac tacagaaaaa tttgaaaaat ataggaagat      4020
     cctgtgtaat gaaaatgact gaagactgct tgaaatcaaa tcatattttt tgtaatcatt      4080
     taaatgtttt tgtttagaga gtgaaagtgt aatttttttt ctttttaatg tgaacaattt      4140
     tactgttaag ggagtgtgt                                                   4159
//
ID   Copia-2_LMi-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-179
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3076-3076 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 179 BP; 64 A; 22 C; 30 G; 62 T; 1 other;
     tgagtaaatg ttcgattggt aacaggtaaa attgttttaa agatgatcaa agaatacaaa        60
     cattaatact ctttgacgta aataataact ttgacttatg tagtttggtt tcctgtttca       120
     gtaataaawg tgtgtttgtg aaatgcagta atcgtgttca taaaaaccct aacctaaca        179
//
ID   Copia-2_MoPha-I repbase;    DNA;    INV; 4066 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4066
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1123-1123 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..4039
FT                 /product="Copia-2_MoPha-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MATASSLANIEKLTETNYELWKVQMKSVLVFNDLWRY
FT                 AEGTEIKPAADAQEWIRKDSKALALINLSITHSQLNHVKKATTSKEAWDGL
FT                 KAVFESRGPVRKAALYKQLQRMEKKPNITMTQYVTDFTRKAEQLEEAGIEI
FT                 PDELLSIMLLGSLPAEFENFSVAIESRDEIPTLENLKIKLIEEEARQSDRV
FT                 ARTNEDCNNNEALLTKGRPERSNRSNAKSKDSHTKASVNKFSGKCYSCGKS
FT                 GHMSRFCKAKPKRSESNDATDAMTAIACNTEIIKKSNTWYLDSGATRHMCN
FT                 DERAFVTIKNDERVKINTASDHFVESGGRGDIKLDAKSNRQIINSVKLKDA
FT                 LYVPELRNNLLSVSNITENGYTVKFGKDRATVNRKDGSIVFTASKRDQLYV
FT                 VNERREQAAFVNEREKIELIKWHQRYGHLNIRDLKAIKTKDMVLGMSLASK
FT                 INEIDCEVCAKCKIHVKPFKPSSSREPSVLGLVHSDICGPMSTESIGGAKY
FT                 FATFIDDCSRHTEVVMLRNKSDIFQAFKDYKRRVENQTGKRIKKLRTDNAR
FT                 EYLSNNFTNFLKEEGVRHQLSVEYTPQQNGVAERANRTLVEMARCMMLQAG
FT                 LPDSLWAEAVNTAAYLRNRCATKCLDGITPFEAWTQRKPYVGFFRTIGSKT
FT                 IALNKNQRGRKFQPKGDEYLLVGYSDESKAYRLWKPGTKTVIKARDVKFFE
FT                 RIESSPESPSGKVFAAPNTFIETSDGKTSNEDTEDEVIGDSRESHNGDTED
FT                 EPMDNASDLQTAEQEVSEPRRGPGRPRIARTGKPGRPRKVYQDSNARHPDP
FT                 KSTSQMLERNDREA*LSAMKREYDILLENKTWTLVPRPLDKKILTNRWVFK
FT                 AKVGQDSEIKKYKARLVARGNTQEWGVDYEEVFAPVARYETIRTLLAASVD
FT                 EEMHVHQMDVISAYVQGELNDEIYMEQPEMFVKRGHEEKVCKLLKPLYGLK
FT                 QSGREWYKKLDSYIMEIGGKRTSADPCVYVIGENERRVIIIVYVDDLILAS
FT                 KKMDRLEDVKLKMKSMFKMVDLGQINNILGISVQREGATGRIHLSQKKYVE
FT                 DLIEKFDMEQAKAVSTPIEPNLKITKEASPSTEEERQEMRNRPYRELIGGL
FT                 IYLANATRPDISFAASTLSRFCADPGNDHWLIAKRVLRYLKATSHYGITYV
FT                 KDEERLRAYSDSDWAGDIDDRKSCTGNVLTLATGPISWKSKKQASVALSTM
FT                 EAEYAALSEVSREVVYIKRLLIHMGFEKYVTPPINVFCDNQSAIELSKNAV
FT                 FHKRSKHIDINFHFTRELVDKKEIVIHYLQTDSMLADILTKPLTKCKHDRC
FT                 VQMLNLNSIIC"
XX
SQ   Sequence 4066 BP; 1405 A; 751 C; 1000 G; 910 T; 0 other;
     ggttatgggc ccagggatcg cacactgtgc caataagtaa attcagtgtt caaagaaagg        60
     acacgcaaaa atggctactg catcgagtct cgcaaatatt gagaagctga ctgagactaa       120
     ttacgagctg tggaaggtac aaatgaaaag cgtattagta ttcaacgact tgtggaggta       180
     cgctgaaggc acggaaataa aaccggcagc agatgcacaa gagtggataa ggaaagactc       240
     aaaggcatta gcgttgataa atttaagtat cacgcacagc caactcaacc acgttaagaa       300
     ggctacgacg tcgaaggaag catgggacgg actaaaggcg gtattcgaat cacgaggccc       360
     tgtgcggaag gcagctctgt acaagcagtt gcagaggatg gaaaagaagc cgaacatcac       420
     gatgacgcaa tatgtaaccg acttcacacg gaaggcggaa cagcttgaag aagcgggcat       480
     cgaaatacca gatgagttgt tatcgataat gctattaggc tcattaccgg ccgagttcga       540
     aaattttagt gtagcgatag aatcacgcga cgaaataccg acacttgaaa acttaaaaat       600
     aaagctcatc gaggaagaag ctaggcagag tgaccgcgtc gcgagaacca acgaagactg       660
     taataataat gaagcgttac tgacgaaagg acgtcccgaa cggtcaaatc ggtcgaatgc       720
     aaaatcaaag gacagtcata caaaggcgag cgtaaataaa tttagcggaa aatgttatag       780
     ttgcggtaaa agcgggcaca tgagtcgatt ctgtaaagcg aaaccgaaac gcagtgaatc       840
     aaacgatgcg actgatgcga tgacggcaat agcgtgcaat accgaaatta ttaagaaatc       900
     gaatacttgg tacctcgata gcggcgcgac caggcatatg tgcaatgacg agcgtgcttt       960
     tgtgacaata aaaaacgacg agcgagtaaa aataaataca gcctcggatc acttcgtgga      1020
     gtcaggcggt agaggcgata taaagttaga cgcgaaatca aatcgacaaa taattaactc      1080
     cgtaaaatta aaagatgcgt tatacgttcc agagttgcga aataatcttt tgtcagtgtc      1140
     gaatattact gaaaatggtt atacggtcaa attcggaaag gatcgagcaa cggttaatcg      1200
     gaaggacggt tctatagttt ttacagcgtc aaaacgtgat cagttatatg ttgtcaacga      1260
     aagaagagaa caggcagcgt ttgttaatga aagagaaaaa atcgaattaa taaaatggca      1320
     tcagaggtac ggacatctta atattaggga tttaaaagcg ataaaaacta aagacatggt      1380
     actaggtatg agtcttgcgt caaagataaa tgaaatagat tgcgaggtat gcgcaaagtg      1440
     taaaattcac gtgaaacctt ttaaaccatc gtctagtcgt gaaccgagcg ttttagggtt      1500
     agtgcactct gacatttgcg ggccgatgag cactgagtcg atcggtggcg caaagtattt      1560
     tgccactttc attgacgatt gttccagaca tacagaagtc gtcatgctcc gaaataaatc      1620
     agacattttt caagcattca aggactacaa gagaagagtg gagaatcaaa ctggcaaacg      1680
     aatcaagaag ctccgtacag ataacgcgag ggaatacttg tctaataatt ttaccaattt      1740
     cctcaaagaa gaaggagttc gacatcagtt gagtgtcgag tatacacccc aacaaaatgg      1800
     tgtggcagaa cgagccaacc gcacgctggt ggaaatggcc aggtgtatga tgctgcaagc      1860
     tggtctccct gattctctat gggcagaggc agtaaacacg gcggcgtatt taaggaatag      1920
     atgcgcaacg aagtgtcttg atgggattac accatttgaa gcatggacgc aacgaaagcc      1980
     gtacgtgggt ttcttcagga cgatcggaag taagacaatt gcgctaaata agaatcaaag      2040
     aggaaggaaa ttccaaccga aaggcgacga atatttgctg gtgggttact ccgatgagtc      2100
     aaaagcatat cgattgtgga aaccgggaac gaagactgtc atcaaagcac gggatgtaaa      2160
     attctttgaa aggatcgaat cttccccaga atccccgtca ggaaaggtgt ttgccgcacc      2220
     taatactttc attgaaacgt cagacggaaa aacgagtaat gaagatactg aggatgaagt      2280
     cataggagat tctagagaaa gtcacaatgg agatacggaa gacgaaccta tggataatgc      2340
     atcagatctc caaacagcag aacaagaagt aagtgagccg cgccgggggc caggtcgtcc      2400
     taggatcgct aggacaggca aaccgggaag accacgaaaa gtctatcaag acagcaacgc      2460
     tagacatcca gatccaaagt ccacatcaca aatgttagag agaaatgaca gagaagcatg      2520
     actatcagcc atgaagagag agtatgacat cttactagaa aacaagacat ggacccttgt      2580
     acctagacca ttggataaga agattttaac taaccgatgg gtatttaagg ccaaagtcgg      2640
     tcaagatagc gagatcaaga aatacaaggc acggcttgta gctagaggaa acacccaaga      2700
     atggggagta gattatgagg aagtgtttgc ccctgtggcg agatatgaaa caattcgcac      2760
     gttactcgcc gcttctgtgg atgaagaaat gcatgtgcat caaatggacg tgatctcagc      2820
     atatgtacaa ggagaattga acgacgaaat atatatggaa cagcccgaga tgtttgttaa      2880
     acgtgggcac gaagaaaaag tttgtaagtt gctcaaacca ttatacggcc taaagcagtc      2940
     aggacgagaa tggtacaaga agctcgacag ctatattatg gagattggtg gtaagcgcac      3000
     atcggcagat ccctgcgtct acgtaatcgg tgaaaatgaa agacgagtca ttatcatcgt      3060
     ttatgtcgat gatttaattt tggcttcaaa gaagatggac agactcgaag atgtcaagtt      3120
     gaagatgaaa tcaatgttca agatggtaga ccttggtcaa ataaataata ttcttggaat      3180
     aagtgtgcag cgcgaaggtg caaccggaag aatacacctt tcgcaaaaga aatacgttga      3240
     agatttaatc gaaaaattcg atatggagca ggctaaagcg gtatctacac caatcgagcc      3300
     aaacttgaaa attactaagg aagcaagtcc atcaaccgaa gaggaaaggc aagaaatgag      3360
     gaatcgacct tatagagagc taatcggcgg actgatatac ttagcgaatg ccacacgtcc      3420
     tgatatatca ttcgcagcca gcacattaag tcggttttgt gcagacccag gaaatgatca      3480
     ttggctcatc gcgaagcgag tattacgcta tctaaaagca acgtctcatt atggaatcac      3540
     atacgttaag gatgaggaac gtctaagagc atactctgat tcggattggg caggagacat      3600
     tgacgaccgc aaatcgtgca ccgggaatgt cttaacacta gctacgggtc caattagttg      3660
     gaaatcaaaa aagcaagcgt ctgtggcttt gtcgaccatg gaggcagaat acgcggcact      3720
     ttcagaggtt tcacgtgaag tagtctatat caaacggctg ttaattcata tgggtttcga      3780
     aaaatatgtg acacctccaa ttaatgtgtt ctgcgacaac caaagcgcga ttgaattgtc      3840
     aaaaaacgct gtattccata agcgaagtaa gcatattgat attaactttc acttcacacg      3900
     cgagttagtt gataagaaag aaattgtaat tcattatcta cagacagatt cgatgcttgc      3960
     tgacatactt acgaaaccgt taactaaatg taaacacgat aggtgcgtac agatgttaaa      4020
     tctaaattct attatttgtt gatagagatc ttgtcgatag agggag                     4066
//
ID   Copia-2_MoPha-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-312
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1126-1126 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 312 BP; 80 A; 63 C; 61 G; 108 T; 0 other;
     tgtgagaaaa ctaagatata tatgtgtgtg tatcgaaaag gtctctagga tcacatttag        60
     ttcatggaga gtacgcgacg tgtgcgtgcg ccacaagcct aatttttggt ctttaagttt       120
     ccgccctagt atgcggtaca tttatgttct tctcgctgat ctgcgccacg cggtgcctgt       180
     gcatcacacg tttcttttat aaaagttata accactcaat tatatcattt tgttgtttac       240
     taaatataat taccaacgta caaagttgtg tgtgttacta cgagtacctt cgtttagcct       300
     aaatccctgt ca                                                           312
//
ID   Copia-2_RP-I repbase;    DNA;    INV; 4076 BP.
XX
AC   ACPB02046047;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_RP_;
KW   Copia-2_RP-LTR; Copia-2_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4076
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02046047; Positions   35139   31064.
XX
CC   Positions [1562-2059] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..2476
FT                 /product="Copia-2_RP-I_1p"
FT                 /translation="MDSRGIIVIDKLLGQSNWKDWKFQVRIQLQCNDAMQA
FT                 IDGTLLKPTQLPLKATSKDVEEYNKSLIAYNRIEYYAQGLIASSVTPEVRK
FT                 LINMCTTSKHMWDKLRSIYEQRTEQRQDRLFNEFFGIREKDTSDNIAGHIA
FT                 RLEKLWEELKDETWKEDKVKLPDSLFLNRVLNTLPGQYFEFINAWESVSKK
FT                 DRTIDLLRERLCTVELRFNERSSVCSGDVQKDSVALVVSKEKNVSKDYRTS
FT                 RRGPRCYFCSEFGHVVKYCPNKHGKDAKSDQGARDSAFFGAFEANTSGSDE
FT                 WFADSGATHHMTMNKNFLFSYQLFPALQPVLIGNGQHMMAIGKGNVKVEMQ
FT                 VNQGWKKGTLYDVWLVPDLSKNLFSISSVVSKGLKAVFDSRGCTIMRKNTV
FT                 AATATRSNGIFKVDMRVVLPETLLGTSPQANLANKLDSLQVWHERLSHQNK
FT                 KYVGKFLNENGVNFVDDDFFCEACLYGKQSRMSYGQRTVKPMKPGELVHAD
FT                 VCGPMPVASLGGSQYFLILKDDYSKYRSVYFLKRKSEVSDKLKIFLAEVRT
FT                 RGHTLKEVLTDGGTEFNNGDVKEIIEKAGLSHRVTMPYSPEQCGGAERENR
FT                 TIVEAARSMIHAKGLPESLWAEAVNTATYVINRTGPTPVDNKSPYELWFGR
FT                 KAAISHLKVFGTECFVHVPKQQRKKWDKKSKKGYLVGYCHDKDGFRVWIPQ
FT                 RNDVITSRDVVFKNEETSLCSAESKILEERLEEETGPDLVYIPVPTMGNVE
FT                 QVSTVDDEMVEEMSSPKRLRDRTALRKPIHLEDYVSCV"
XX
SQ   Sequence 4076 BP; 1212 A; 692 C; 1044 G; 1128 T; 0 other;
     ggttatgggc ccaggacagt tagaatagaa gaacaattcg gagtgtttgc gtttaagttt        60
     tgctttgcac tgtgtattat cggatccttt ttgttttggt atattggcaa tggattcacg       120
     aggaattatt gttattgaca aattgttggg ccagtcaaat tggaaagact ggaagttcca       180
     ggtgaggatc caattacaat gtaacgatgc aatgcaggct atagatggca cacttttaaa       240
     gccgacacag ctgccactta aagctacatc caaagatgtg gaagaatata ataaaagttt       300
     gattgcttat aacagaatag agtactatgc tcaaggcttg attgcttcga gtgtaactcc       360
     tgaagtaagg aaacttatta atatgtgtac tacatcaaaa cacatgtggg ataagctacg       420
     cagcatttat gagcagcgta ctgagcagcg tcaggatcgg ttgtttaatg aattttttgg       480
     cataagagaa aaggatacat ctgacaatat tgcggggcat atagccaggc tcgaaaagtt       540
     gtgggaggag ttgaaggacg agacgtggaa ggaagataag gtaaaacttc cagattccct       600
     gtttttgaat agagtgctaa acaccttgcc tggtcaatat tttgaattta ttaatgcctg       660
     ggagtccgtg tccaagaagg accgtaccat tgacctattg agggagcggt tatgcacggt       720
     tgaattgcgg ttcaatgaga ggtccagtgt gtgctcgggt gatgtacaga aagactccgt       780
     ggcattggta gtatcaaaag aaaagaatgt ctccaaagac tatagaacgt ccagaagggg       840
     gcctcgctgt tatttctgca gcgagttcgg acatgtcgtc aaatattgtc caaataaaca       900
     tggaaaggac gccaaatctg accaaggtgc gcgggattct gctttttttg gagcctttga       960
     ggccaacact tctgggagtg atgaatggtt tgcggattct ggtgcaactc atcacatgac      1020
     tatgaataaa aattttttgt ttagttacca actttttcca gctttgcaac ccgtacttat      1080
     tgggaatgga cagcacatga tggctattgg taaaggaaac gttaaagttg aaatgcaagt      1140
     caatcaaggt tggaagaagg gtaccttgta cgatgtttgg ctggttcctg atttgagtaa      1200
     gaatcttttt tctatttcct ctgttgttag taaaggatta aaggcggttt ttgactcaag      1260
     aggctgtact attatgagaa agaacactgt agctgccacg gcgacaagaa gcaacggtat      1320
     tttcaaagtg gatatgaggg tagttctgcc tgagacacta cttggaactt ctcctcaagc      1380
     gaatttggct aataagctgg acagcctaca agtatggcat gagcgtttga gtcatcaaaa      1440
     caagaagtac gtaggaaagt ttttaaatga aaatggcgtg aattttgtcg atgatgattt      1500
     cttttgtgag gcttgtcttt acggcaaaca gagccgcatg agttatgggc aacgaaccgt      1560
     gaaacccatg aaacctggcg aacttgtgca tgcggatgta tgtggcccta tgccagtcgc      1620
     atccttgggt ggatcacaat attttttaat actcaaagat gactacagta agtataggag      1680
     tgtctatttc cttaaacgaa agtctgaagt atcagacaaa ttgaaaatat ttttagccga      1740
     agttcgtaca cgcggtcaca cattgaagga ggtgctgacg gatgggggta ctgaatttaa      1800
     caatggtgat gttaaggaaa ttattgagaa ggcgggcttg tctcatcggg tgacgatgcc      1860
     ctactcgccg gaacagtgcg gtggcgcaga gagagaaaat cgcacaatag ttgaagctgc      1920
     acggagtatg atacatgcca aagggttacc ggagagtctg tgggctgaag ctgttaatac      1980
     tgccacatac gtgattaaca ggacggggcc cacaccagtg gataacaagt ctccctacga      2040
     attatggttc ggtaggaaag ctgctattag tcatctgaaa gtttttggca ccgaatgttt      2100
     tgtgcatgtc ccaaagcagc agagaaagaa atgggataaa aaaagtaaaa agggatacct      2160
     cgttggatat tgccatgaca aagacggttt tagagtttgg attccccaga gaaatgatgt      2220
     aattaccagt cgcgacgtgg tgtttaaaaa tgaagaaaca agtttatgtt ctgcagaaag      2280
     taagatacta gaagaacgcc tggaagaaga gactggtcct gatcttgtgt atattccggt      2340
     tcctacgatg ggcaatgtgg aacaagtttc cacagttgat gatgagatgg ttgaagaaat      2400
     gtcgagcccc aaaagactga gagacagaac tgcgctgaga aaacccattc acctggaaga      2460
     ttatgttagc tgcgtgtgag gagccgctaa cactggaaga ggcactggaa tccgaggagg      2520
     agccgagctg gagagaagcc atcaaagaag aacttgcatc gctggatgaa aatcaaacat      2580
     ggactcttgt tgatctgcct gaaggaagga aggcaataga caatcgatgg gttttcaaga      2640
     gaaagtacaa ttctgatgga actataagac ataaagccag attagttgct cggggtttca      2700
     cccagaagcc tggggttgat tatagagaaa cgttttcacc agtagtaaga tgggatactg      2760
     ttagggcgtt tttaagcgta gttgaatcta gaaattttat tttgggtcaa tttgacatta      2820
     aaacggcttt tcttaatgcg aatatagatg aagaaattta tatgaggcaa ccgaaaggtt      2880
     ttagtgatgg ctcggagcgt gtttgcctgt tagagaaaag tttatacggc cttaagcagg      2940
     catctaggaa gtggcaccaa aggttttgtc gattttttgg agaactgtgg cctagtttgt      3000
     agtgacgaag atacatgctt gtttatttcc tcagatcact ccttgatctt gattttgtat      3060
     gtcgatgatg ggcttgtggc tgtcaacaaa cgagaagttt tggatgtttt ctttttgaaa      3120
     ctgcagaagg aatttaaagc aactgtgagt tacagtgtga accaattttt aggtatggaa      3180
     gtaagtcaga tacaggatgg ctctatcttc ataagccaac agacgtatgt gaagaaggtt      3240
     attagtaagt ttggcatggt tgaggcgaac cctgtactga cacctgttga tcccagccat      3300
     ctcgccgaag tttgcactga gaatctagat aagtcctatc cttaccgcga gctggtaggt      3360
     agcttaatat atttatccat tgtcaccaga cccgatattt cgtatgttgt aggtgtgttg      3420
     tcacaggtat tggacaaacc caaactcaaa cattggaata tggttaaacg tttgctgcga      3480
     tacattaagg ggacgcaaga ttttggaata cactaccagc aggactcaaa ccggaaattg      3540
     gaagtatata ccgatgctga ctatgcaggt gattcaggtg atagaagatc aactacagga      3600
     ttatttttcc gctattgtgg aggggctgtt agctggagga gtagcaagca gaagtgtata      3660
     gcactttcca ccacagaagc cgaatttatt gctgccagtt caaggagcga aggaagctat      3720
     atggctgtcc ccgtttgtat gcctctttgg ttggctcagc tgatgttcca gcgctaatga      3780
     ttgataatca gagtgctatt cgactgatta agaacccgga gttccatagt cgcactaaac      3840
     atattgatgt acgatacaag ttcgtcagag aaaagtacca ggagggtggc ctacaggtgc      3900
     aatatgtacc tagtgaatac cagattgcag atatctttac gaaaggactt tcaagacccc      3960
     gcttcgagag catgagggag agtttgggac taatttctaa gggcgctctt tcatcaacct      4020
     tttaaattgg actttaaagg gggggttcaa attaagaggg agtattagaa ttaatt          4076
//
ID   Copia-2_RP-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   ACPB02046047;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_RP_;
KW   Copia-2_RP-I; Copia-2_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-150
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02046047; Positions   31063   30914.
XX
SQ   Sequence 150 BP; 34 A; 19 C; 19 G; 78 T; 0 other;
     tgaatttgta tgatcgctat gcatttgcac catgtgattt tttttttttt ttcttttaca        60
     tatgtggtgt taatatcttt gtatatttta gttacattaa agttttctat tctagctgaa       120
     cctttcgttt tttttttatg aaatccaaca                                        150
//
ID   Copia-2_SI-I repbase;    DNA;    INV; 4215 BP.
XX
AC   AEAQ01001041;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_SI_;
KW   Copia-2_SI-LTR; Copia-2_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4215
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01001041; Positions    1141    5355.
XX
CC   Positions [1718-2218] - Integrase core
CC   'CTGTA' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           254..2647
FT                 /product="Copia-2_SI-I_1p"
FT                 /translation="MMADSLVDLKNVTKFDGQNFQLWKFQMKAIFIAHDLL
FT                 DIVNGTAVKPEATGQPQIAWIQRNAKATVLISAAMQPSQLEHLITCDSAAE
FT                 MWNKLSAIHEQTSATSKLLLTTRFHEYRMKLGDSVSQHITKVENMARQLKD
FT                 VGEAVSDVTIMAKILGSLPPKYNAFVTAWDSVEEANQTIFNLTQRLIKEEN
FT                 QLTATDEAASALAAVNLKHHKKGPRRGKLRQPQESDAEHGKYQNFECHFCH
FT                 NKGHIARYCKKKRNVQKGQDEKKRGANDDRKSDLADHDAFVASSDISVTEC
FT                 TDTDDAWFSDSGASQHMSFRKEWFAEFESCNGITVSLGDNSLLKAEGRGTI
FT                 FIKKLVNGEWQDGKLVNVLYVPLLRKNLFSIGACTAKGHVFVIRDNGIDIY
FT                 SKQNKLIAHGIRQGNNLFRLEFTAIVKREANAVVRSTLKLWHDRLGHVNNK
FT                 YLQAAIENKLIDGVKVSEISDFFCENCQYGKQHRLAFKSKSPRKMLKPGEF
FT                 IHTDLCGPMQTPSIGGAKYFILFKDDCTGFRYVHFLRHKDDVFDVFKEYEA
FT                 MIFNKFSQRIQTIRSDNGTEYSSHRFRDHLKSRGIQLECSAPYTPQQNGSS
FT                 EREMRTIVESARTMLLAKKLPTRLWAEAVNTAVYVLNRTPSSRSKLTTPYE
FT                 VWTGKKPNLSHAKIFGCDAYVHVPEQQRKKWDSKSKKLVFVGYQGDSRNYR
FT                 LIDPETDRITISRDVSFNECAEPIFECPAASLPLPNERAVLDNNEQPEQID
FT                 DCPRREADQCENPHHEVEPDVINSRPKLRNRNLLRALPIRSLFCFIH"
FT   CDS           3033..4145
FT                 /product="Copia-2_SI-I_2p"
FT                 /translation="MRVPKGLNVPNDNSICKLNKALYGLKQAGRCWNKKFD
FT                 AFFKKFKFARGSADRCVYFGLINNDKVYLALYVDDGLLMASKIETINLILN
FT                 ALKDNFDVTASEADCFVGMQIERDRVNKKICIHQSKYIDSILHRFAMCDAH
FT                 VISVPADPHVTLEKCLSNDELHDIPYREAVGSLLFVSLVSRPDITYAVGLV
FT                 SRYLERHSNPHWQAVKRIFRYLKGTKNLGIIYTNSGSKLNLVGFSDSDYAG
FT                 NKDTRRSTTGYLFELANGPITWCSKRQSTVSLSTTEAELIAASEAAREAIW
FT                 LRKLLNDVGHPCETPSLLYVDNQSAIRLTKNPEFHRRTKHIEVRHHFIRER
FT                 YESGEINIRRLHTFKRSKNGPVNQTDSA"
XX
SQ   Sequence 4215 BP; 1291 A; 927 C; 1002 G; 995 T; 0 other;
     ggttatgggc ccagatcacg gacattttcg agtgaaataa gatttcgaag aatacgtgag        60
     aaggtatagt gtgccgcttg ttccttcggc gttttttttt tctgattgca cgaggcacag       120
     tcgaacacgt cgggaacttt ccgacgcctc gcagtttttt tctgttctcg tggtatacac       180
     gtgttaagtc gtcgcccatt tgacgcgcgt gttgtgatcc tgtctggact gaaaaggatt       240
     gtgaaacgag aaaatgatgg cagactccct tgtagacctg aaaaacgtga cgaagttcga       300
     tggacagaat ttccagctct ggaaattcca gatgaaggcg atcttcatag ctcacgattt       360
     gctggacata gtcaacggaa ccgcagtgaa accggaagcg acgggacagc cacaaatcgc       420
     ctggatacaa cggaacgcaa aggcgacggt gctcatatcg gccgctatgc agccctcgca       480
     gttggaacac ctaattacgt gtgatagtgc cgctgagatg tggaacaagc tatcggcgat       540
     ccacgaacag accagcgcaa caagcaagtt actgctcacg acgaggtttc atgagtaccg       600
     catgaaactc ggcgactcgg tctcgcagca tatcacaaaa gttgagaaca tggcaaggca       660
     actcaaggac gttggtgaag cggtctccga tgtcacaatc atggcaaaaa tccttggatc       720
     gctaccgcca aaatacaatg cttttgtgac cgcttgggac agcgtggaag aggcgaacca       780
     gaccattttc aacctgacgc agaggctcat caaggaggaa aaccagctca ctgcaaccga       840
     cgaggcggcg agcgcactag cagccgtcaa cttgaagcat cacaagaagg gtccgagaag       900
     agggaaacta cgccaaccac aggagagcga tgccgaacac ggaaagtatc aaaattttga       960
     atgtcatttt tgtcataata aagggcacat tgcccgctat tgtaaaaaaa agcgtaacgt      1020
     acagaaaggc caagacgaaa agaaacgcgg tgcaaatgac gatcgcaaaa gcgacctcgc      1080
     ggatcacgac gcgtttgtcg cgagcagcga catttctgta accgagtgca cggacacaga      1140
     cgacgcatgg ttctctgaca gtggcgcgtc gcagcacatg agttttcgga aagaatggtt      1200
     cgcggaattc gagtcgtgta acggtatcac tgtaagtctc ggtgataact cacttctaaa      1260
     agccgaaggc cgcggtacga tttttataaa gaaattagtt aatggcgaat ggcaagacgg      1320
     taaattagtg aatgttctat atgttccgct gctgcgaaaa aatttgtttt cgatcggcgc      1380
     ctgtaccgcg aaaggacatg tatttgtcat ccgagacaac ggtatcgaca tctattcgaa      1440
     gcaaaacaag ctgatcgcgc acggtatcag gcagggcaat aatttattta gattggaatt      1500
     caccgcgata gtgaaacgcg aagcgaacgc cgtggtaagg agcactctga agctctggca      1560
     cgaccgtcta ggccacgtca ataataaata tctacaggca gcaattgaga ataagctaat      1620
     cgacggtgta aaggtttccg aaatctccga tttcttttgc gagaactgtc agtacggtaa      1680
     acaacatcgc cttgcattca aaagtaaaag cccaagaaaa atgttaaagc ctggtgaatt      1740
     cattcacact gatctgtgtg gaccgatgca aactccatcg atcggaggcg caaagtattt      1800
     cattttgttt aaggacgatt gtaccggttt tcgttatgta cattttctac gacataaaga      1860
     tgacgtattt gatgttttca aagaatacga ggcgatgatc tttaacaaat ttagtcaaag      1920
     aatccaaacg atacgttctg acaatggcac agagtattcg agtcatcgat tccgcgatca      1980
     tttaaagtca cgcggcattc aattggaatg ctccgcaccg tacaccccgc agcaaaatgg      2040
     ctcttcggaa cgcgagatgc gtactatcgt agaaagtgcc cgaacaatgt tgttagcgaa      2100
     aaagttacct acccggctct gggcagaagc cgttaatacg gctgtttacg tgttaaatag      2160
     aaccccatca tctcgatcaa aattgacaac accatatgaa gtatggacgg gtaaaaaacc      2220
     gaatttgtcg catgcaaaaa tcttcgggtg tgatgcatac gttcatgtcc cagaacagca      2280
     gagaaagaaa tgggattcga agtctaaaaa acttgtcttt gtcggttacc aaggcgattc      2340
     gagaaattat cgtctgatag acccagagac ggataggata acaatctcgc gggatgttag      2400
     ttttaacgaa tgcgccgaac caatattcga gtgtcctgct gcaagtttac ccttaccaaa      2460
     tgagagagct gtattagaca ataacgaaca acccgaacaa atagacgact gtcctcgacg      2520
     cgaagcggat caatgtgaaa acccgcatca tgaagtcgaa ccggatgtta ttaattcgcg      2580
     accaaagcta aggaatcgca acctgttacg cgccttgccg atacgaagct tgttttgttt      2640
     catacactga atcgaataca tatgacgaag ccgtgaccgg aaaagactca gaaaagtgga      2700
     cacaggctat ccgcgaagag ttagcagccc atgagcggaa tcaaacatgg gagatagtgc      2760
     ctttgccaca cgaccgtaaa gccatagggc acaagtgggt tttcaaagta aaaaccacgt      2820
     cgtcgggtga gattacgcgt tataaggcgc gtttatgcgc ccaaggtttc tcgcagaaag      2880
     ccggagtaga ttacgacgag attttctccc ctgttgtgcg atacgattct gttcgaacgc      2940
     ttctgtcaat cgctgcggcg aacgatttgg aaatttatca gttcgatgtt aaaaccgcat      3000
     atttgaataa taatttaaac gaagaaattt acatgcgtgt tcccaaaggt ctaaatgttc      3060
     cgaatgataa ctcaatctgt aagcttaata aagcattata tggcctaaaa caagccggtc      3120
     gatgctggaa caaaaaattt gatgcatttt ttaaaaaatt taagttcgct cggggcagcg      3180
     ctgacagatg cgtctatttc ggtttgataa ataatgacaa agtgtacctc gcattatatg      3240
     tcgacgatgg cctattaatg gcctcgaaaa tcgagaccat aaatttaatc ttaaatgcat      3300
     taaaagataa ttttgacgtc actgctagtg aggctgactg tttcgtggga atgcaaatag      3360
     agagagatcg cgttaacaaa aagatttgca tccaccaaag taaatatata gattccatct      3420
     tacacagatt cgcgatgtgt gacgcgcacg tcataagcgt gcctgcagat ccccacgtta      3480
     ccctcgaaaa gtgtctcagt aacgacgagt tgcacgacat tccgtatcgt gaggccgtcg      3540
     gctcactttt gttcgtgtca ctggtctcaa gacccgacat aacgtacgct gtcggacttg      3600
     taagtagata tttggaaaga catagtaatc ctcactggca ggccgtcaaa cgaatatttc      3660
     gatacctaaa aggcactaaa aacctgggca taatatacac aaacagtggg agcaaactta      3720
     atttagtagg cttctcagat tccgactatg ccggtaataa ggacactagg cgctccacaa      3780
     ctggctacct cttcgaatta gcaaacgggc ctatcacgtg gtgctcaaag cgccaaagta      3840
     ccgttagtct tagtaccacc gaggcggaac tcattgcggc gagcgaagct gcgcgagagg      3900
     caatttggct gcgcaagcta ctgaatgatg tcggacatcc gtgtgaaacg ccttctcttt      3960
     tgtacgtaga taatcagagt gcgatcagat tgacaaaaaa cccagagttc catcgacgca      4020
     cgaaacacat tgaggtccga catcacttta taagagaaag atacgagagc ggagagatta      4080
     acatacgtcg actacatacg ttcaaaagat caaaaaacgg acctgttaac caaaccgata      4140
     gcgcatgatc atttccaaga tttacggcgg aaaattaatg taatcgatgt atcgaaaacg      4200
     ctcaatcagt gggag                                                       4215
//
ID   Copia-2_SI-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   AEAQ01001041;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_SI_;
KW   Copia-2_SI-I; Copia-2_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01001041; Positions     852    1140.
XX
SQ   Sequence 289 BP; 63 A; 69 C; 54 G; 103 T; 0 other;
     tgttagattt aatatattat gtatttctca ttttcttatt gtattcttaa tccgcgtctt        60
     gtattgtgtt atgcgacgta tcctaatgcg tttgtttttt ttttgtaacc tctgcgaccg       120
     cgaaccagcg cgaggcgctg tcgtcgagcg acgttttcgc cggttgagaa accatccagt       180
     tcagtccgcc tgattccggc actgagtaaa ccacgttttt aataaagcta tacatatcac       240
     gaatatctcc tgtttcaact cgactggctt cccgttccta accgtaaca                   289
//
ID   Copia-2_SiOr-I repbase;    DNA;    INV; 4131 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4131
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 336-336 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4038
FT                 /product="Copia-2_SiOr-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MASQKFDYSVEKFGITQFDGKNFDHWKFRVETVLDHY
FT                 GVKKCITEQITSPTEEQIKLDKKCKSVIVQCVANSHLEYIKDKNTSYDMWK
FT                 ALEKVFQRKGVASQLYLRRKLLTMKFNANEMLETHFTKFEETIRELKSVGA
FT                 TLEEVDIVCHLLLTLPKSYDTIVTALETLETNKLTLEFVKGKLLDHEVKRK
FT                 NFEERNDSDLAAFSGYQRNMNTRNAGTSNKHYQKENKSDTNYTRQKDSKGI
FT                 KCHNCGKVGHFRKQCWFISKRQANQVESKEEKQENISFTAAAMNTEAATVE
FT                 CGEDFVNFVVDSGATDHMINSDKYFTNSKNLQGELKIAVAKEEESLSCSKV
FT                 GNVYVKLSNCIAEIKDIFYVKNLRQNLLSVQKLESAGLEVIFKENSVFINK
FT                 NSKLLAKGSKINNLYVIKFKLEPYKNYANFCEQNSNIKLWHSRLGHLSCQN
FT                 VLKLAKNNMVEGVNISMNNLKGYNSEICSICAQTKITRLPFTKVSGKVTKR
FT                 PLEVVHSDICGPISPTTYDNKRYFLTFLDDYTHFSMVYLLESKNEVFKCFT
FT                 EFEARVTNLTGYRIGSLYCDNGSEYCSHNFKAFCRTKGIHIRYNVPYNPET
FT                 NGAAERLNRTLLEKGRAMLLQSQLPKTMWGESILCATYLLNRSPTVCLKDV
FT                 TPAEMFYKKKPNLKNIKVFGSLVYDHIPKEKQNSKFDTKANIRIMIGYQTN
FT                 GYRLWDPIKKKAFSGRNVIFDEAKNINDMQMIDTYLDLNDTENVKILIKEK
FT                 TDEESLTEEMENETDNEVSEEKVENEGNRKSHRVRKTPSYFNDYITENEIE
FT                 HMALNASAFVENVPESLEKAKSMPDYKNWKNAVKEEINALNLNKTWTLVEK
FT                 PKDARVIDCKWVFRTKRNDLGEIVKYKARLVAKGFMQREGFDFEETYAPVA
FT                 RLVTVRTLLAVANFKNLEIQQMDVKSAFLHGKINEDIYMNIPEGFVNDGRV
FT                 CKLNKALYGLKQAPYCWNKRFDEFVRSERFTKSNNDPCLYIRINENITTYL
FT                 LLYVDDILIVSSNMQEIEKIKSILNKEFHMQDIGDLKAFLGINVRRTKDGI
FT                 YLSQRDYIINLLNRFNMTECKSIKTPMESRKFNINGTNEHNDKRPIRELIG
FT                 CLMYLMLATRPDLSMSINLCSRYQGNPTEELWKSLKRILRYLQGTMNLELF
FT                 YPKNSEKLIGFVDADWAGDEEDRKSTTGYLFKVFGCTVTWSTKKQSTVATS
FT                 STEAEYVALAESVKEGIWLSKLLNDLGFTQSQFVMFEDNQSCIKLTKRWDH
FT                 KRLKHIDVKYNFIKDLVIEKMVLVEYVRSNEQIADILTKNLPGDLFIKHRF
FT                 NLGLLLC"
XX
SQ   Sequence 4131 BP; 1634 A; 498 C; 787 G; 1212 T; 0 other;
     ggttatgggc ccagtccatg cctagatata agagttggaa aataaagtac aacctattcg        60
     aagattaaca cagttttcaa aatggcgagc cagaaatttg actattcagt tgagaaattt       120
     ggaatcacgc aatttgacgg aaagaatttt gatcactgga aatttagggt tgaaactgtt       180
     cttgatcatt atggagtcaa gaagtgcata actgaacaaa taacttctcc tacagaagaa       240
     caaattaagc tagataaaaa atgtaaatca gtcattgtac agtgtgttgc aaattcacat       300
     ttggaatata taaaggacaa aaatacttcg tatgacatgt ggaaggcact ggaaaaagtg       360
     ttccaaagaa aaggagtggc aagccaactt tatttaagaa gaaaattgct gacaatgaaa       420
     tttaatgcaa atgaaatgct agaaactcat ttcaccaagt ttgaagaaac aattagagaa       480
     ctaaagtcag taggtgctac gcttgaagaa gtagatattg tctgtcattt acttttaaca       540
     ttaccgaaga gttatgatac tatagttaca gcactggaaa cgttagaaac aaataaacta       600
     acacttgagt ttgtaaaagg caaattactt gaccatgaag ttaaaagaaa gaactttgag       660
     gagagaaatg actctgatct tgcagcattt agtggctatc aaaggaacat gaatacaaga       720
     aatgctggta caagtaacaa gcactatcag aaggaaaata aaagtgatac aaattacaca       780
     agacaaaagg acagcaaagg aataaaatgt cataactgtg gcaaggtagg acatttcaga       840
     aaacaatgct ggttcatatc caaaaggcaa gcaaatcaag tagaaagtaa agaagagaaa       900
     caagaaaata tttcatttac tgcagcagcg atgaatacag aagcggcaac tgttgagtgt       960
     ggtgaggact ttgtcaattt tgtggtagac tctggtgcga ctgatcatat gatcaatagt      1020
     gacaaatact ttacaaattc aaaaaatcta caaggtgagc ttaaaatagc agttgctaaa      1080
     gaagaagaat cgttaagctg ttctaaggta ggcaatgtat atgtaaaatt aagtaattgc      1140
     atagctgaaa taaaagatat tttctatgtt aaaaatttga gacagaatct cttgtcagta      1200
     cagaaactcg agagtgctgg tttggaagtg atttttaaag aaaatagtgt atttatcaat      1260
     aaaaattcaa aattattagc aaaaggtagt aaaataaata atctatatgt tattaaattt      1320
     aaattagaac catataaaaa ctatgctaat ttttgtgagc aaaattcaaa tattaaatta      1380
     tggcattcta ggttaggaca tttaagctgt caaaatgtat taaaacttgc taaaaataat      1440
     atggtagagg gagtaaatat aagtatgaat aacttaaagg ggtataattc agaaatatgt      1500
     tctatatgtg ctcaaacaaa aataacacga ttacctttca cgaaagtctc aggaaaagta      1560
     acaaagagac cacttgaggt tgttcatagt gatatatgtg gacctatttc gcccacaaca      1620
     tatgataata aacggtactt tcttactttt ctagatgatt atactcattt tagtatggta      1680
     tatttacttg aatcaaagaa tgaagtattt aaatgtttta ctgagtttga agctagagta      1740
     acgaatttaa ctggttacag gattgggtct ttatattgtg ataatggcag tgaatattgt      1800
     tcacataact ttaaagcttt ttgtagaacc aaaggaattc atatacgcta taatgtacca      1860
     tacaatcccg aaacaaatgg tgcagctgaa aggttaaata ggaccttact tgaaaaagga      1920
     agagcaatgt tattgcagtc acaattacct aaaactatgt ggggagaatc catactatgt      1980
     gctacttacc ttttaaatag aagtcctaca gtttgtttaa aagatgtaac tccagctgag      2040
     atgttttata agaaaaagcc aaacttaaag aatattaaag tttttggtag tttagtttat      2100
     gatcatatac caaaagaaaa acaaaattct aaatttgata cgaaagctaa tattagaatt      2160
     atgattggtt atcagacaaa tggatacaga ttatgggatc caattaaaaa gaaagctttt      2220
     tcaggaagaa atgttatatt tgatgaggca aaaaatatta atgatatgca aatgatagat      2280
     acttaccttg acctgaatga tacagaaaat gttaaaattt taattaaaga aaagacagat      2340
     gaagaaagct tgacagaaga aatggaaaat gaaacagata atgaggtatc agaagaaaaa      2400
     gtagaaaatg aaggaaatag gaaaagtcat agagtaagaa aaacaccatc atattttaat      2460
     gattatatta cagagaatga gatagaacac atggcattaa atgctagtgc atttgtagaa      2520
     aatgtacctg agagtcttga gaaagcaaaa tcaatgccgg actacaaaaa ttggaaaaat      2580
     gcagtcaaag aggaaataaa tgcattaaat ttgaataaaa catggacact agtggaaaaa      2640
     ccaaaagatg ctagagtaat agattgcaaa tgggtttttc gaacaaaaag gaatgatcta      2700
     ggtgaaattg ttaaatacaa agctagacta gttgctaagg gctttatgca aagagagggg      2760
     tttgattttg aagaaaccta tgctcctgtt gcccgacttg ttacagtcag aacgctttta      2820
     gcagtagcaa actttaaaaa tcttgaaatt caacaaatgg atgtaaaatc agccttttta      2880
     catggaaaaa taaatgaaga tatatacatg aatattccag aaggcttcgt aaacgatggt      2940
     agagtctgta agctgaacaa agccttgtat ggtctaaaac aggctcctta ttgttggaat      3000
     aaaaggtttg acgaatttgt aagatctgaa agatttacta aatcgaataa tgatccatgt      3060
     ttatacataa gaatcaatga aaatatcact acttatcttt tattgtatgt tgatgatatt      3120
     ttaatagtta gtagtaatat gcaagaaata gaaaagatta aaagtatatt aaataaagaa      3180
     tttcacatgc aagatattgg agatttaaaa gcatttttgg gaatcaatgt tagaagaaca      3240
     aaagatggaa tatatttaag ccaaagggat tatattatca atctgcttaa tagattcaac      3300
     atgaccgaat gcaagtctat caaaacacct atggagtcaa gaaaattcaa tattaatggt      3360
     actaatgaac acaatgataa aaggccaata cgtgagttga taggatgtct aatgtatcta      3420
     atgttggcaa cacgacctga tttaagcatg tctataaact tgtgcagtag atatcaaggt      3480
     aatccaactg aagaattatg gaaaagttta aaaagaatat tgagatatct tcaaggtaca      3540
     atgaatcttg aattatttta tccaaagaat tcagagaaac ttattggatt tgttgatgct      3600
     gattgggctg gtgatgagga agatagaaaa tctacgacag gttatctatt taaagtattc      3660
     ggatgtacag ttacatggag taccaaaaag cagtcaacag tcgctacctc ttcaactgaa      3720
     gcagagtatg ttgctcttgc agaatctgta aaagaaggga tttggttgtc aaaactgtta      3780
     aatgaccttg gttttacaca gagtcaattt gtgatgtttg aagacaatca gtcctgtata      3840
     aagttaacaa aacgttggga tcataaaaga ctaaaacata ttgatgttaa atataatttt      3900
     attaaagatc tagttattga aaagatggtt ttagttgaat atgtgaggtc taatgaacaa      3960
     attgctgata ttttaacaaa gaatttgcca ggtgatttgt ttattaaaca cagatttaat      4020
     ttaggattgt tactatgtta aaattgttct atgtattagt attagatatt tttgtactga      4080
     aagaaattgt agatattgtg tacatggtag aatgttttga ttgagaaggg g               4131
//
ID   Copia-2_SiOr-LTR repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-247
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 325-325 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 247 BP; 78 A; 28 C; 49 G; 92 T; 0 other;
     tgttaagaaa gacaatcaaa atattctggt gtcgctgtgt ctagcctttt taatagtcta        60
     gggtaagtct aatatggaga taagttaagt ctgtggttat caagatgaag tgaagtgcgt       120
     tgcttgtttg aaggcttcgt ttatttttat tgttcttagc agttcttaga gttaattaat       180
     ttgttacaag taaagaaaca atattgtatg ttcagtttat aaataaagat atacacactg       240
     ctcaaca                                                                 247
//
ID   Copia-2_SpEx-I repbase;    DNA;    INV; 4049 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4049
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4064-4064 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..4036
FT                 /product="Copia-2_SpEx-I_1p"
FT                 /translation="MDFSTKLEIGKLEGKNNWQTWKYKISVMLEGTEGALE
FT                 AVENRLPMPVLPPGAGDAAQSTYNAAMAKYKRTQSGALLMLTTNMTEETLK
FT                 KVMRYKTAHEVWAELHRLFDRQTEDRAYNLCLEFFGLKRDQEDDIPTLLSK
FT                 LKNLWNDLVVEIQKVDGTAKLPDLFLICKVLHTLDDRYFNFKSSWLMLKQS
FT                 EKTIDSLTSHLCAFERDLGGPESTIQKEALVTTPAEQKSKHKKERNDLKCN
FT                 YCSGKGHRVRQCKKWIKDGRPPKPSTSHSDIKSNQVQNLSLMVNACTVNQI
FT                 QDKESWYVDNGATTHIAVSRKMFTDFREFDSNHTVTTADGTVIPAVGIGSI
FT                 KVESKVNETKVHITLEEVWLVPSLTKNLFSPLAAQDRAQNSIFTSTTKKCK
FT                 LEIEGMTKVVGRRIPKGGLYKLDFKTVIPTTPRAIQVNAVTGSNMLQLYHE
FT                 RFAHQDKRHVIRVVKRELGVNLKPDNIKCEGCIYGKSQRQTFGTRERATVC
FT                 GELIHTDVCGPFAPSITKLRYYVLFKDDYSGYRMVYFIRQKSEVKDKLLQM
FT                 LKEAKNAGHNVKTLLSDNGGEFDNKDVKKILQDFGIQHRLTMPYTPEQNGC
FT                 SERENRTLVEAARSMMHARNELPQILWAELINTAAYVLNRTGPSRVTDKVP
FT                 YELWHGKKPRISHLKVIGSECYAHIPKQKRNKMSRKAMKGILIGYENDDGY
FT                 RVWDGHQTFKSRDITFQSNVEFTLRLGSEDATDTTEQDDDGEFVDAEGEEN
FT                 FPAEGEQQPLDIVEPLRVEVPRLEGEEEEIVVEPLRDEPQREEEPRYNLRD
FT                 RSTLAPPKKFDDYVCFVGTENFPESYHEAISRTDGAEWRKAMASELQSLKE
FT                 NNVWTLCELPSNRKALPCKWVFRIKRHPDGSIDKYKARLVVKGFRQRKGLD
FT                 YEETYSPVARMSTIRALLSVAAQEKLHLTQFDVATAFLNGKLEQEIYMSQP
FT                 PGFSDGSSKVCRLQRSLYGLKQAPRCWNMCIEDILLQKGFTQNEADCCLFT
FT                 KTEGGNKILLALYVDDGLMATTSEALATKFLKELGQAVKITSKPASYYLGL
FT                 EIERSKDGSIFISQQAYTRKILERFNMIDCNPVSTPIETVTSETGKAPEKK
FT                 FPYREAVGALAYLMTGTRPDIAYAVGVVSRKLENPTEADWLRVKRIFRYLK
FT                 GTMSHGIKYSSGPCKAVIRGYSDADHGGDELSGRSTTGVICMYADGVVSWL
FT                 SQRQASVAISTTEAEIVAASEGARELVWLQRIYAQLTSLADISTLSVDNEA
FT                 AIRLAHNPEFHKRTKHIRIRHFFVREIVQEGLLNVQKTSSTEQLADLLTKA
FT                 VPRPRLVKLREDLGLQDLSN"
XX
SQ   Sequence 4049 BP; 1304 A; 796 C; 1003 G; 946 T; 0 other;
     ggtattggga cccaccacca ctggacgact gaaaagtgcc atggatttct caacgaaatt        60
     agagatcgga aaactagagg gcaaaaacaa ttggcaaaca tggaagtaca aaatttcagt       120
     catgcttgag ggtacggaag gtgctttaga agcagtagaa aatagacttc caatgccagt       180
     tttaccacct ggtgcaggag atgctgctca aagcacttat aatgctgcaa tggctaaata       240
     taagaggact caaagcggtg cactcctgat gctgacaacc aatatgactg aagaaacgtt       300
     aaagaaggtt atgcgttaca aaacggcaca cgaagtttgg gcagaactgc atcgactttt       360
     tgataggcag acagaggaca gggcttacaa cttgtgtctt gaattctttg ggctaaaacg       420
     ggatcaagag gatgatattc ctacacttct gtcaaagcta aagaatttat ggaacgacct       480
     agtagtggag atccagaaag tagacggaac agctaagctg cctgatctat tccttatctg       540
     caaggtttta catactctgg atgacaggta ttttaatttt aagtcgagct ggttaatgct       600
     gaagcagtct gagaaaacga tcgacagtct tacgagtcat ctctgcgcat ttgaaagaga       660
     tttaggtggt ccagagagca ccatccaaaa ggaagcactg gtgactacac ctgcagagca       720
     aaagagtaag cacaagaagg agagaaatga tctgaaatgt aactactgtt ccggtaaagg       780
     acatagagtt agacagtgca agaaatggat aaaggatgga agaccaccaa agccaagcac       840
     gtcacattca gacattaaat ctaaccaagt gcagaactta tcgctgatgg tgaacgcgtg       900
     cacagttaat caaatacaag ataaagaatc ttggtatgtt gataacggag caaccacgca       960
     catagccgtt tcaagaaaga tgtttacgga ttttcgtgaa ttcgattcaa atcacacagt      1020
     aactacagcg gatgggactg tgattcctgc agttggaata ggttctatta aagttgaatc      1080
     caaggtcaac gaaactaaag tccatattac tcttgaagaa gtctggctag taccatcact      1140
     cacaaaaaat ctcttttcac cgttggcggc acaagacaga gcgcagaaca gtatttttac      1200
     atcaacgaca aaaaaatgca agttggaaat tgaaggcatg actaaagtcg ttggcaggag      1260
     gatcccaaag ggaggccttt acaagttgga ctttaaaacg gtaattccaa caacaccgag      1320
     agctatacag gtaaatgctg tcaccggttc caatatgctg cagctctatc atgagcgttt      1380
     tgcacatcag gacaagcggc atgtaatacg cgtcgtaaaa cgtgaattag gcgtgaacct      1440
     caagcctgat aatattaaat gcgaaggctg catatatggg aagtcccaaa gacagacctt      1500
     tggaaccagg gaaagagcta ctgtatgtgg agagctaatc catacagatg tatgcggtcc      1560
     ttttgcacca agcataacta aactccggta ctacgtattg ttcaaggacg actactcagg      1620
     ctaccgtatg gtttacttca tacgtcagaa gtcagaagtc aaggacaagt tgctgcagat      1680
     gctgaaagag gcaaagaatg ctgggcataa tgtgaaaacc ttgcttagtg acaacggtgg      1740
     cgagtttgat aataaggacg tcaagaaaat actacaggat tttggtatac agcacagact      1800
     gacaatgcct tacacaccgg aacagaacgg gtgtagtgag cgtgagaacc gaaccctggt      1860
     agaggccgcg agaagtatga tgcatgcaag gaatgagtta ccgcaaattt tgtgggcgga      1920
     attgattaat accgcagcgt atgttctgaa tagaacaggc ccaagtcgag tgacagacaa      1980
     agttccatac gaactatggc acggcaaaaa acctcgaata tcacacctca aggttattgg      2040
     tagtgaatgt tatgcacata tcccaaagca gaagcgtaac aaaatgtcta ggaaagccat      2100
     gaaaggcatt cttattggct atgaaaacga cgatggatat cgtgtgtggg acggacatca      2160
     aacattcaaa tccagagaca taacttttca aagtaatgtt gaattcacat tacggttagg      2220
     gtctgaggat gctactgata ctactgagca agatgatgat ggagagtttg tcgatgctga      2280
     aggggaagag aattttccgg ctgaagggga acagcaacct cttgacatag ttgagcctct      2340
     gagagtagag gtgcctcgac tagaagggga agaagaggaa attgtagtcg agcccctgag      2400
     agatgagccc cagagagaag aggaacctag atataacctt agagacaggt caactcttgc      2460
     tccccctaag aagttcgatg actacgtctg ctttgtaggc acagaaaact ttccagagag      2520
     ctaccatgaa gcaataagta gaactgacgg tgcggaatgg cggaaagcca tggccagcga      2580
     gcttcagtca ctcaaggaga ataatgtatg gacactgtgc gagctcccgt ctaatagaaa      2640
     ggcgctacca tgtaaatggg tttttcggat taaacgacac ccagatggaa gcatagacaa      2700
     atataaggcg cgattggtcg ttaaagggtt cagacaacgg aaagggctag attatgagga      2760
     gacatatagt ccggtagcca ggatgtctac cattagagct cttttaagcg ttgctgcaca      2820
     agagaaactt catttaacac aatttgacgt cgcgacagcc tttttaaatg ggaaattaga      2880
     gcaggaaata tacatgtcac aacctcctgg cttttctgat ggctcttcga aagtatgcag      2940
     gctacagagg agtctatatg gcctaaagca agctcctcgt tgctggaaca tgtgcattga      3000
     agacattctg ttgcaaaaag gattcacaca gaatgaagct gattgttgtc tctttacaaa      3060
     gacagaaggg ggcaataaga ttttgttggc gttgtacgtg gatgacggac tcatggccac      3120
     tacaagcgag gctttggcaa ctaaattttt gaaggagctg ggacaagctg tcaaaatcac      3180
     aagcaagccg gcttcgtatt accttggcct tgaaatagaa cgttccaagg atggatctat      3240
     atttataagc caacaagctt atacgcggaa gatcctcgaa cgcttcaata tgattgactg      3300
     caatcccgtc tctacaccaa tcgaaacagt gacttcagaa acagggaaag cacctgagaa      3360
     aaagtttcct tatcgagagg cagtaggagc cttagcatac ctgatgacag ggacgcgccc      3420
     cgatatcgcg tatgctgttg gggtagtatc acggaagttg gagaatccga cagaagctga      3480
     ttggctgaga gtcaagagga tcttcagata ccttaaagga acaatgtccc atggcatcaa      3540
     atacagttcg ggtccttgca aagctgtaat tcgaggatat agtgatgcag atcacggtgg      3600
     tgatgagctt agtggacgct caaccacagg cgttatttgt atgtatgctg atggagttgt      3660
     ttcgtggcta agccaacgtc aagcatcggt cgcgatttca acaaccgaag cggaaattgt      3720
     ggcagcgagc gaaggtgcac gagaacttgt gtggcttcag aggatctatg ctcaacttac      3780
     aagtttggcg gacatatcaa ctttaagcgt ggataatgaa gcagccattc gccttgccca      3840
     caatcccgaa tttcataaac ggacgaaaca catccgaata cgtcacttct ttgtacgtga      3900
     aattgtgcaa gaaggtctat tgaatgtgca gaaaactagc tccacagagc aattggctga      3960
     ccttttgacg aaggcagtac caagacccag actcgttaaa ctgagagagg atttgggtct      4020
     gcaagatctt tccaactagt gagggaaag                                        4049
//
ID   Copia-2_SpEx-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-318
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4075-4075 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 318 BP; 122 A; 50 C; 56 G; 90 T; 0 other;
     tgttgaggtt gcatagcact agtgaaaagc tctttggtac attgctaggc aactaactgt        60
     tagaaaaatt taatgtcact cgtgaataaa aagaagatca tgtcgaatgt gtgcaatata       120
     taaaactaaa taaataaaca aataatctaa atattttgta accaaataaa cctaaattat       180
     cgctataaag tgtcagtgtt gtcatactgg agaaaacccc tactatctag ccgaaatcta       240
     aagtgggaaa tacatcgatc acgatttggt ctccggagct tccagattgg taagaaaata       300
     agtagaccac gtttaata                                                     318
//
ID   Copia-2_TCa-I repbase;    DNA;    INV; 4112 BP.
XX
AC   ChLG7;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_TCa_;
KW   Copia-2_TCa-LTR; Copia-2_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4112
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG7; Positions 6101252 6097141.
XX
CC   Positions [1499-2032] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..3532
FT                 /product="Copia-2_TCa-I_1p"
FT                 /translation="MADGINLSAINKFDGNNYKQWRFQLKCALKAKGVYSI
FT                 AIGEIEKPSANRVEELNTWNKKDAIAMCVITSTMELSQITMIESCDTAKEI
FT                 LDKLDAIYDIKTETNKMLIHEEFHQYKMCLNDSIAQHISKVENLARRIRES
FT                 GDNISEVAIITKILGTLPAKYRNFRQAWLSLAEDKQTLSNLTSRLIDEERN
FT                 LTTVETTENALVTTTRVVPNKKTIRGKPRITCYNCNKKGHISRECRAPRKT
FT                 HVTQGHSGAFLIEDVNEIATKIQEDEAWILDSGASAHMTSRRDMFSTIQEV
FT                 DEFSVKLGNGSELKVKGKGTIEIECWLENEWIKNKMTDVWYIPNLKRNLFS
FT                 EGQITKKGMTITKENNKAKIVCDGVVKACAVRQSNNIYKLLIRCTTKTSEV
FT                 NLTATRSLQTWHQRLGHINMKTIQEMAKRGLIDAHGTTDDEVNQICEGCRY
FT                 GKQHKMPYHKIEKRNYKAGELIHTDVCGPMSVDSVGGCRFFILFKDDSTNF
FT                 RTVYFVKHKSDALDCFKQFYYMCKNKFGHPIKTLRADNGGEYVNQEFHKFL
FT                 KDRGIILETCAPYCHEQNGKAERENRTLVESARSMIFTKNLPLYLWAEAVN
FT                 TAAYILNRTTNSINQEVTPYELWTNKTPDLKHIRIFGSDAYMHVPDNLRKK
FT                 LEPKSKKLILVGYDNDSTNYRLFDRATRKIKIARNVTFGEDNELTLPRANK
FT                 IVITDEIHDDERNLEHNNQNDQTKEPEEEPVPETEDRRGYNLRPREILKTP
FT                 NNLDDYVINIVEGDTPNTYDEAITSSESEEWRNAIQEELDALKKNDTWNLV
FT                 NLPVDKKAIGSKWVFKIKRSPNNKNIRYKARLCAKGFAQTEGVDYNETYAP
FT                 TTRYDTIRILLAVAARENYQMIQFDVKTAFLHGELEENIYMQPPPGLSVPP
FT                 NSVLKLKKSLYGLKQSPRCWNRKFNEFLELFGLKQCESDKCVYTGKFNEQL
FT                 MILLLYVDDGLILAKDMDTLHKMGNKLKSAFEVTICEPEYFVGLEIKRQSD
FT                 PKVGKNSIFIHLSNFIDRIIDRFNMNDARTCNTPADPNAILSQSDPNEPKN
FT                 NDVLFPYREAIGCLMFAAISARPDIMYAVNVVSRYQNNPTIAHVNAVKRIF
FT                 KYLKGTKELGNPLQQLR"
XX
SQ   Sequence 4112 BP; 1450 A; 771 C; 896 G; 995 T; 0 other;
     ggttatgggc ccaggtcgca agggtagttt tagttcagtt ttgtctacag taacgttcga        60
     gtgaaacacg cgttcgggcg attaaaaact ggttcgtgcg gtcaaaacca gtgtgtcggg       120
     tgattcacag acaaaaacga gtgtcgtgaa aacaagaatg gcagacggaa taaatttgtc       180
     agcaataaac aaattcgacg gaaacaacta caagcagtgg cggttccagc taaaatgcgc       240
     cctaaaggca aagggggtgt attcaatagc aataggcgaa atagagaaac cgtcagcgaa       300
     tagggttgaa gaactcaaca cctggaacaa aaaggacgcc atagcaatgt gcgtaataac       360
     atctacgatg gaattgtctc aaataacgat gatagaaagc tgcgatacgg ctaaagaaat       420
     tctcgacaag ttggatgcga tctacgatat aaagacggag acaaacaaga tgcttataca       480
     cgaggagttt catcagtaca aaatgtgttt aaatgattcc attgcacaac acatttcaaa       540
     agtcgagaat ctggcaagac gaataagaga atctggcgac aatataagcg aagtggccat       600
     aattacaaaa attcttggta cgctgccggc gaaataccgc aattttagac aggcatggtt       660
     gtctttagcg gaagacaaac aaacacttag caacctgaca tcaagactca tcgacgaaga       720
     gcgtaattta acaactgtgg aaacaacaga aaacgcgttg gtcaccacta cacgtgtcgt       780
     accaaacaag aaaacgataa gaggaaaacc acgcattacg tgctacaatt gtaataaaaa       840
     agggcatatt tcaagagagt gtcgtgcccc acgaaaaacc catgtgactc aaggtcacag       900
     tggagcattc ttaatcgaag atgtcaacga aattgctacc aaaatccaag aagatgaagc       960
     atggatcctg gacagcggcg cctcggcgca tatgacgtca cgacgcgaca tgttttcaac      1020
     aatacaagag gtcgatgagt tcagtgtgaa acttggcaat ggcagcgaac taaaagtaaa      1080
     aggaaagggt acgattgaaa tcgaatgctg gctagaaaac gaatggatta aaaacaaaat      1140
     gacagatgtt tggtatattc caaatctaaa gagaaacctc ttctcggagg gtcaaattac      1200
     gaaaaaggga atgacaatta caaaagagaa taacaaagcc aaaatagttt gtgatggtgt      1260
     cgtaaaagcc tgtgcagttc ggcagtcaaa taatatttat aaattactga tacgttgtac      1320
     aacaaaaaca agcgaggtta atttgacagc gacaagaagt ctacaaactt ggcatcagcg      1380
     cttaggacac atcaatatga aaacaatcca ggagatggcg aagagaggct taatcgacgc      1440
     acatggaaca actgatgacg aggtcaatca aatttgcgag ggttgtcggt atggtaagca      1500
     acacaaaatg ccatatcata aaatcgagaa aagaaattac aaagccggtg aattaattca      1560
     cacagacgtg tgtggtccaa tgtcagtaga ttccgtcggc ggatgtcgat tctttatact      1620
     tttcaaagac gattcgacga attttagaac cgtttatttc gtaaaacata aatcagatgc      1680
     tctcgattgt ttcaaacagt tctattatat gtgcaaaaat aaatttggtc acccaattaa      1740
     aaccttgcgt gcggacaatg gcggggaata cgtgaatcag gaatttcata agttcttaaa      1800
     agatagaggc ataattctcg aaacctgcgc cccatattgt cacgaacaaa acggaaaagc      1860
     tgaacgcgaa aatcggactc tagttgaaag cgcccgatct atgatcttta cgaagaattt      1920
     accattatat ttgtgggcgg aagccgtaaa cacggcggca tatattttga atcgaacgac      1980
     aaattcgatc aaccaagaag tgacgccata cgaactttgg acaaacaaga cacctgatct      2040
     aaaacacata agaatctttg gttctgacgc gtacatgcac gtacctgata acttaagaaa      2100
     gaaattagag ccgaaaagca agaaactgat ccttgtaggg tatgataatg actcgacaaa      2160
     ttacagactg tttgatcgag caactcgaaa gattaaaatc gctagaaatg taacattcgg      2220
     cgaagataat gaactgactt tacccagagc aaataagatt gtaatcacgg atgaaattca      2280
     cgacgatgaa agaaatttag agcataataa ccaaaacgat caaactaaag aacccgagga      2340
     agaacccgta ccagaaactg aagatcgaag agggtataat ctgagaccac gtgaaatttt      2400
     aaaaacacca aacaatcttg atgattatgt gataaacata gttgagggcg ataccccaaa      2460
     tacatatgac gaagcaatca ccagtagcga atccgaagag tggagaaatg caatacagga      2520
     ggaactggac gctttgaaga agaacgatac ttggaatctt gtcaacctac cagttgataa      2580
     aaaggcaatt ggatctaagt gggtgttcaa aattaaaaga tcccccaata ataaaaatat      2640
     tcgttataag gcacgattat gtgcaaaagg ttttgcccag accgaaggcg tagattataa      2700
     cgaaacgtat gcaccgacaa ctcgatacga cacgataaga attcttttgg ccgtcgccgc      2760
     aagagaaaat tatcagatga tacagttcga cgtcaaaaca gcattccttc acggagaatt      2820
     agaagaaaac atttacatgc aacctcctcc cgggttatct gtgccaccta attctgtgtt      2880
     aaaattaaaa aagtcattgt acggacttaa gcaatcacct cgctgctgga acaggaaatt      2940
     caacgagttc ctcgaacttt tcggacttaa acaatgtgaa agtgataaat gtgtttacac      3000
     aggaaaattc aacgaacaat taatgatcct tctactgtat gtagatgatg gtctaatttt      3060
     ggcaaaggac atggacactc tacacaaaat gggcaacaaa ttaaaaagtg cgttcgaagt      3120
     gaccatttgt gaaccagaat attttgtggg actggaaatt aaaagacaga gtgatcctaa      3180
     agttggtaag aattcgatct tcatacattt atcgaacttt atcgatcgta ttattgaccg      3240
     ttttaatatg aacgatgcga gaacatgtaa tacaccagct gatccaaacg cgatattgtc      3300
     gcaatccgat ccaaacgaac ccaagaacaa tgacgtgcta tttccttacc gagaagcaat      3360
     tggatgttta atgttcgccg caatttccgc gcgtcccgat attatgtacg cggtaaatgt      3420
     agtgagtcgt taccaaaaca atccaacaat cgctcacgta aacgccgtga aacggatctt      3480
     caaatattta aaggggacta aggagcttgg gaatcctcta caacaactcc ggtaaactca      3540
     tcggatactc ggatgccgat tatgcgaacg acatcgattc caggaagtcg acaagcggct      3600
     tcgttttcaa actgggagac ggcgccatca cctggtgtag tcgtcgtcaa aggtgcaact      3660
     ccctatctac aacggaggcc gagtacgtgg cagcttcgga agctaccaag gaagcagtgt      3720
     ggataagtgg cctcttaagt gaagtgggtg aaaagtgcgg tggtgtcgct ttgtgcgttg      3780
     acaaccaatc agcgattaag cttgttaaaa atccaatgta tcataaacgc actaagcata      3840
     tcgatgtccg atatcacttt gtacgtgaga aatatgagaa tggagatatt gtcttgaaat      3900
     atgtaccatc gactgaacaa gtcgccgatg tgtttactaa agcattatgt tatgcgaaat      3960
     ttaatgtttt tgttttgaat ttgggaatgt tgttcattag tcccactgtg taattttttt      4020
     ttgtttgttt cttgtatttt gttctgatgt actctaatta atgtaagttg tttaaaaaaa      4080
     aatgtaacaa attccggcag aatacggggg ag                                    4112
//
ID   Copia-2_TCa-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   ChLG7;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_TCa_;
KW   Copia-2_TCa-I; Copia-2_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-253
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG7; Positions 6097140 6096888.
XX
SQ   Sequence 253 BP; 62 A; 60 C; 54 G; 77 T; 0 other;
     tgttgggaat tacattgtat tcagacgcga atttgtgccc tgcgagtgct tgttgttagt        60
     gcgcatgttc ggcttcagat gaagatgaag gatcctcgag agagagtaag agttgatgtg       120
     cagtcgccga cgtatagact cgcaactctc ggttattgtt tccaattctt tcctgcccgt       180
     tccattaata tattaaccgt attatcaacc gtgtttcaat actacctacc actgctcgac       240
     caccaccaca aca                                                          253
//
ID   Copia-2_TrNi-I repbase;    DNA;    INV; 3993 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-3993
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 202-202 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..3211
FT                 /product="Copia-2_TrNi-I_1p"
FT                 /note="gag, integrase, reverse transcriptase."
FT                 /translation="MSSNYVVSVPKLKGRENYQEWAFAAENFLILEGTSDC
FT                 IKVTNPDEAAADAKTKAKLILTIDSSLYVHIKDVENTKKLWEKLKHLFDDS
FT                 GFTRRISLLRTLISIRLENCTSMTSYITQIIETSQKLSGSGFHINDEWVGS
FT                 LLLAGLSEKYSPMIMAIEHSGINITADAIKTKLMDLEEDSGDVSGAFASYQ
FT                 KKYGANTGRTQTSTSTLRSKQKVIKCYKCKQTGHYRNQCPKDVKDSSNNKF
FT                 IERKQTNVFSAVFLNGCFSKNDWYIDSGASGHLTANEHWITNVSNNHTVQE
FT                 IIVANKEKVSVKCSGDVRLTTLTDNCEYDVVVEGVLCVPSLTTNLISVSQL
FT                 IAKGNKVLFKDDGCQILNKCNELVATADLLNGVYKLRMPERLAAVVSSSET
FT                 WHRRLGHVNSNYLSKMQEAVEGLTLDRKAEITKSSCIVCCEGKQNRLPFPH
FT                 YGNRSDDLLQIIHTDVCGPFKNVSLGGSRYFILFIDDYSRYTYIYFLKSKN
FT                 EAFECFQRYKAEVENKLNRKIKIIRSDNGKEFVNKEFDNFLSKAGIVHQKS
FT                 NPYTPEQNGLAERFNRTVVEKARCLLFDAKMDETFWAEAANTAVYLLNRIV
FT                 AAKLNRTPFEMWNGVKPDISHLRVFGSIVMMHIPKEKRLKWNKKAVKGILV
FT                 GFSEDVKGYRVYNPSTQDITTSRDVIIMENAEQTESVVQIEETKQSQTIED
FT                 SVGDTSYESGSEISHDDNDETYVPDDSSDDSVESVVSVKRSGSSRQRKKPD
FT                 RYGHSNMCLESSVTKNACELSLDEALKGPDREQWLEAIRDELQCFDDNDAW
FT                 ELTDAPKDSTIVKCRWVLCKKYDSESKVRFRARLVAKGFSQKQGVDYTETF
FT                 SPVVRHTTLRLLFSLSVQLDLDVTHLDVKTAFLNGNLEETIYMQKPECFNS
FT                 PDNSKKVLKLNKAIYGLKQASRAWNKKVDSCLIINGYKKSKLEHCMYTKKI
FT                 ENMVTIVALYVDDFFIFSNNKKETNSLKEILSNKFKIKDLGQVKKCLGMNV
FT                 KFDKKEGSVTLNQESYIESLLEKFQMADCEDC"
FT   CDS           3180..3932
FT                 /product="Copia-2_TrNi-I_2p"
FT                 /note="ribonuclease H."
FT                 /translation="KNFKWQTVKTVETPMETKLNVNTGQNVTKQVPYQQLI
FT                 GSLMYLSVLTRPDITYSVSYLSQFNINHTDEHWHYAKRILKYLKKTKSFGI
FT                 KYCKNGNKEIKGFADADWANNTYDRRSYTGYCFLLSNGVISWECKKQKTIA
FT                 LSSCEAEYMSISEACKEAIYLRTLQFEITNKLYTLSLFNDNQSAQKLSMNP
FT                 VFHKQSKHIDVKYHFARECVSNNIVKLSYLSTADMPADLFTKSLCAKKHYA
FT                 FMELLGLVIV"
XX
SQ   Sequence 3993 BP; 1390 A; 565 C; 864 G; 1174 T; 0 other;
     ggttatgggc ccagaattac gtgtttttct cgttaagaac ttgcaagtta gtgctgtata        60
     agtttgtgtg gactgagaat acactgtgct ggtgaaaatg agttcgaatt acgttgtgag       120
     cgtgccgaaa ttaaaaggtc gcgagaacta ccaggagtgg gccttcgccg cggagaattt       180
     tctaatactg gaaggtactt cggactgtat caaagtcacg aatccagatg aagccgcagc       240
     cgatgcgaaa accaaggcaa aattgattct aacgattgac tcgtcgctat atgtacatat       300
     caaggatgtc gaaaatacga agaaactatg ggaaaaattg aaacatttat tcgatgattc       360
     cggttttacc agaaggatca gcttattgag aactttaata tcaattcgtc ttgaaaattg       420
     tacatctatg acgtcctaca ttactcagat catagaaacg agccaaaagt taagtggatc       480
     gggctttcat atcaatgatg agtgggtagg atcattgctt ttagctggat tgtctgaaaa       540
     atattcgcca atgataatgg caattgaaca ttcgggcatt aatataacgg ccgacgccat       600
     taaaacaaaa ttgatggact tagaggaaga cagtggcgac gttagcggag catttgcgag       660
     ttatcaaaaa aaatatggcg ccaataccgg aagaactcag acgtcaacgt caacgttacg       720
     gtcaaaacag aaagtaatca aatgttacaa atgcaaacaa acgggacact atcgtaatca       780
     atgtcctaag gatgtaaaag attcatcgaa taacaaattc attgaacgta aacagacaaa       840
     tgtgttcagt gccgtgttcc taaatggttg tttctcaaag aatgattggt acattgattc       900
     aggtgctagt ggccatttaa cagcgaatga acattggatt acaaatgtgt cgaacaatca       960
     tacagtccaa gaaattattg ttgcgaataa ggaaaaagtg tctgtcaagt gctctggcga      1020
     tgtgagatta acaacattga cagataactg tgagtatgat gtggttgttg aaggtgtatt      1080
     atgtgtacct agtttgacca cgaatctcat ctctgttagt caattgatcg caaaaggcaa      1140
     caaggtcctg tttaaagatg atggctgtca aatattgaat aagtgtaatg agctagttgc      1200
     tacagctgac ttattaaatg gagtttataa gttgagaatg cctgaaaggc tggctgcagt      1260
     ggtgtcctcg agtgaaactt ggcatcgccg gcttggtcat gtcaacagta actatttaag      1320
     taaaatgcaa gaagctgtgg aaggtcttac acttgataga aaggcagaaa taacgaagtc      1380
     ttcatgtata gtgtgttgcg aagggaaaca aaatcgttta ccctttccac attatggaaa      1440
     tagaagtgat gatctcctgc agataataca tacagatgta tgtgggccat tcaagaatgt      1500
     gtcgcttggt ggttccagat attttatttt atttattgat gactatagtc gctacaccta      1560
     tatttatttt ttgaaaagca agaatgaagc ttttgaatgt tttcaaagat acaaagctga      1620
     ggtggagaat aaattaaaca gaaaaattaa gattattaga agcgacaatg ggaaagaatt      1680
     tgtaaataaa gagtttgata attttttaag taaagctgga atagttcatc agaaaagtaa      1740
     cccatacaca ccagaacaga atggcctggc agagagattt aatcgcactg tggtggagaa      1800
     agcaaggtgt ctgctctttg atgctaaaat ggatgaaacc ttttgggctg aagcagccaa      1860
     tactgcggta tacttgctaa ataggatagt agctgcaaaa ttgaatagaa caccttttga      1920
     gatgtggaat ggagtaaagc cagatattag ccacttaagg gtatttggaa gtatagtgat      1980
     gatgcacatt ccaaaagaga agcgtctcaa atggaataaa aaggctgtaa aagggattct      2040
     agttggtttc tcagaggatg taaaaggtta tcgagtctac aatccaagca ctcaggatat      2100
     cacaacaagc cgtgatgtga tcataatgga aaatgctgaa caaacagaaa gtgtagtcca      2160
     gattgaggaa actaaacaat cacaaaccat tgaggattca gtgggagaca cgtcatatga      2220
     atcaggaagt gaaatttctc atgatgataa tgatgagact tatgtaccag atgattcttc      2280
     tgatgacagt gtggaaagtg ttgtgagtgt taaaagaagt ggttcctcta ggcaaagaaa      2340
     gaagccggac aggtatggtc attctaatat gtgtttggaa agtagtgtta ctaaaaatgc      2400
     ttgtgaactt tcacttgatg aggctctaaa aggaccagat agggaacagt ggttagaggc      2460
     aataagggat gaattacagt gttttgatga taatgatgct tgggaactta ctgatgcacc      2520
     taaagacagt actatagtta aatgtagatg ggttttgtgt aagaaatatg atagtgaaag      2580
     taaggttagg ttccgtgcca gacttgtagc taaaggtttt tcccagaaac aaggagtaga      2640
     ttatacggaa accttctcgc ctgttgttag acatacaaca ttacgactct tgttttcatt      2700
     atcagtccaa ttagatcttg atgttacaca tttagatgta aaaactgctt ttttaaatgg      2760
     taacttagaa gagactatat acatgcaaaa acctgaatgt tttaattccc cagataactc      2820
     taagaaagtg ttaaaactta ataaagcaat ctatggctta aaacaggcgt ccagggcctg      2880
     gaacaaaaag gtagatagtt gtttaattat aaatggctat aagaaatcta aattagaaca      2940
     ttgtatgtat acaaagaaaa ttgagaatat ggtaactata gtggccttat atgtcgatga      3000
     ttttttcatt ttctccaata ataaaaagga aacaaatagc ctgaaggaaa tattgtctaa      3060
     taaatttaaa attaaggatt tagggcaagt aaaaaagtgt cttggtatga atgttaaatt      3120
     tgataaaaag gaagggtctg ttactttaaa tcaagaaagt tatattgaga gtttattaga      3180
     aaaatttcaa atggcagact gtgaagactg ttgaaactcc aatggagact aagttaaatg      3240
     taaacactgg tcaaaatgta actaaacaag tgccctatca gcagcttata ggtagtctaa      3300
     tgtacctgtc ggttttaacc aggccagaca taacttattc tgtaagctat ttaagccagt      3360
     ttaatattaa tcatactgat gagcattggc attatgctaa gagaatttta aaatatttaa      3420
     aaaagactaa atcatttggt attaaatatt gtaagaatgg aaacaaagaa attaaaggtt      3480
     ttgctgatgc tgattgggca aacaatacat atgatagacg gtcatatact ggttattgtt      3540
     ttttgttatc caatggtgta atatcctggg agtgtaagaa acaaaaaaca atagctcttt      3600
     caagctgtga agctgaatac atgagtattt cagaagcatg taaagaagca atatatttaa      3660
     gaactttgca gtttgaaatc acaaataaat tgtatacttt aagtttgttt aatgacaatc      3720
     agagtgcaca gaagttgtcg atgaatccag tatttcacaa acaatctaag cacatagatg      3780
     taaaatatca ttttgccaga gagtgtgttt caaataatat agtaaaatta tcctatttat      3840
     cgactgctga catgcccgct gacttgttta ctaaaagttt gtgtgctaag aaacattatg      3900
     cctttatgga gttgttagga ttggtaattg tgtaaaatgt tacctaatat ttgttttttt      3960
     gcttatggtt atgattatta gatatagtgg gag                                   3993
//
ID   Copia-2_TrNi-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-157
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 205-205 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 157 BP; 52 A; 24 C; 20 G; 61 T; 0 other;
     tgttgtaatt tatatctaag taatcaacct tatatactgc tactgacatc tgttgtcact        60
     agtaagaaac taacagcctg tattactata ttttatctgt gtaaaaatta aaataaagta       120
     gttctcattt gaatctcaac gtgctcgttt tattaga                                157
//
ID   Copia-2_TrVa-I repbase;    DNA;    INV; 4078 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-2_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4078
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 240-240 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4077
FT                 /product="Copia-2_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MSEKTRWPIFDGRNWSDWKFRMNLIFEERVLKAPLEP
FT                 TFSTLIQNTKEESDKAILRKTERECKSLLVQCLADGMLEYIKDAPTAYDMF
FT                 EILRAKFEKKGILSQTFCRKKLLALKFDDSGNLADFFLEFDSLLRQLKESG
FT                 VSVPENESVSYLLLTLPSPFDPILTALETVEDEKLTLNYVKEKLLNFELKK
FT                 SEPETSSCSRETTAFQTGKNNRFTCNYCHKRGHKWATCFLRQKDEKEKNKN
FT                 WKRSANFSNCTCKNDSDVASESDSDTSDELAFVSETKSGHSIDSSHWILDS
FT                 GASDHMSNDKSLFSTLETLKSPIKIAVAKQTESLIATHSGTLIVRNHDGRR
FT                 IPMNNVLYVPNLRFNLFSIKRVEEKGMKVVFENREVKIFNRNKLVARGTRV
FT                 GKLYEIQLEVLLKSSLNALSSNAGAFNQAELWHARLGHPCNQNLKKLIQHQ
FT                 MLHGLDLTLADVKSSFNETCEGCISGKLNQLPFPSKKKMATRPLQIIHSDV
FT                 CGPITPASFDKKRYFVTFTDEYTHFVQVFTMQNKSEVYDLFVNYEAIVTSQ
FT                 FDQKISNLVCDNAKEYSSHQFQNFCAKQGILIQYSTPYCPQQNGVSERMNR
FT                 TLMEKARCLLLNSQLDKTFWTAAIQTAAYLLNRTPTVTLDQAKTPAEYWYG
FT                 KKPTVSNLKIFGCKAYAHVPKQTRGKLDSKAEVCIMLGYTKTGYKLWSMEK
FT                 KKVITRRDVVFEEDSVKKHFLSDNVTQNPKEEVKLEEQDEEELSQLDEDGK
FT                 LKQEKDDEPRDNESEKQEQRRSNRERRKPMRYGIDDFGVLALSALGQMISI
FT                 PNTYEDAIQSPDREKWIEAMKDEINSIKENKTWDLVELPANKNLVDNKWVF
FT                 TVKTDENGNVVRYKARLVAKGFSQKFGVDYEEVFAPVVKLQTLRTLLSVAN
FT                 HKDYHIHSMDVKTAFLNGYIQEEIYMRQPLGFIKNSSSHLVCKMNKALYGL
FT                 KQAPRNWNQRLDTFLISKGFKRSAADHCLYSKITLKTTLFVIIYVDDIIMI
FT                 SDDLGEINEFKATLSSEFKMTDLGELQAFLGLYIHRERKEGILKINQKKYL
FT                 QKILTKFDMDDCIPIKTPIEAHLNVDREIDRVETMKPYRELIGSLMYIMLG
FT                 TRPDLNFSINYLSRFQGHPTDTHWSYLKRVLRYLKYTQDYELVYKRNDSDP
FT                 LIGFTDSDWASDKEDRHSTSGYVFFALGNCVSWSTRKQATVALSSTEAEYA
FT                 ALSFGACEAIWLKEILNFFQFNFATIIIKEDNQPCIHIAKNAAEHRKIKHV
FT                 DIKLHFIRELVEQQKIQIQYVTSKDNKADIFTKGLPTPHFETLRKSLGILI
FT                 KGG"
XX
SQ   Sequence 4078 BP; 1429 A; 822 C; 783 G; 1044 T; 0 other;
     tggttatggg cccagacccg ctggtcataa tggatgattt ttaaaatttc tcgtgtgtca        60
     atcttttatg cggcttaagt ttgtagccaa aattttttgt gagtgcgtgg cataagtgga       120
     gccactatag tcatgagtga aaaaacgcga tggccaatct ttgatggccg aaattggagc       180
     gattggaaat ttcggatgaa tcttatattt gaagaaaggg ttttaaaagc accattggaa       240
     ccaacatttt cgacgctgat acaaaatacc aaagaagagt cagacaaagc aatcttaaga       300
     aaaacagaga gagaatgcaa atcactctta gttcaatgcc tcgcagatgg tatgctggaa       360
     tatatcaaag atgcccccac tgcctacgat atgtttgaaa ttttgcgcgc gaagtttgaa       420
     aagaagggca ttttatcaca aactttctgc agaaaaaaac tactcgctct caagtttgat       480
     gactcaggta acctagcaga tttttttctt gagtttgact cacttctcag gcagttaaaa       540
     gagtcaggag tatctgtccc tgaaaacgaa tccgtaagtt atttactcct tactttacca       600
     tcaccctttg accccatttt aaccgcattg gaaactgtgg aagacgaaaa attaacctta       660
     aactatgtta aagaaaaatt gttaaatttt gagctcaaaa aatcagagcc tgaaacgtcg       720
     tcttgttcaa gagagaccac agcctttcag actggcaaaa ataatcgctt tacttgcaat       780
     tactgtcata aaaggggcca caaatgggcg acttgtttcc ttcgtcaaaa ggatgagaaa       840
     gaaaaaaata aaaactggaa acgatccgca aacttctcca actgtacctg caaaaatgac       900
     agtgatgtag catcagaaag tgactcagac acttcagatg aattagcctt tgtttcggaa       960
     acaaaaagcg gccactcgat cgactccagt cattggatct tagattcagg ggccagtgac      1020
     cacatgtcca atgacaagag tcttttcagc acgttagaaa ccttgaaatc accaataaaa      1080
     atagcagttg caaaacaaac cgaatcgctg atagcaacac attcaggcac tctcattgtg      1140
     agaaatcacg atggtcgacg catacccatg aataatgtgc tttacgttcc caatttgcgt      1200
     ttcaatctgt tctctataaa gagagtagag gagaaaggga tgaaggtagt ctttgaaaat      1260
     cgagaggtaa aaatttttaa tcggaataaa ctagtagcac gaggtactcg agtcggaaaa      1320
     ttgtacgaaa tacagcttga agtactacta aaatcctctt taaatgcgct ttcttcgaat      1380
     gctggtgcct ttaatcaagc tgaactgtgg catgcaaggt taggacaccc atgcaatcaa      1440
     aacttgaaga aactaatcca acatcaaatg ttgcacgggc tggatttaac tttagcggat      1500
     gtcaaatcct ccttcaatga aacttgtgaa ggatgcattt ctgggaaact taatcagtta      1560
     ccgtttccat caaagaaaaa aatggctacc agacccctcc aaatcatcca cagtgatgtt      1620
     tgtggaccaa taacaccagc atccttcgac aagaaacgct attttgtcac attcacagat      1680
     gaatacactc atttcgtaca agtttttacg atgcaaaata aaagtgaggt atacgatctg      1740
     tttgtaaatt atgaagccat agttacctct caattcgacc aaaaaatatc aaaccttgtt      1800
     tgtgataatg cgaaagaata ttcttcccac caatttcaaa atttttgtgc aaaacaggga      1860
     atcttaattc aatattccac tccatactgc cctcaacaaa atggagtatc agagaggatg      1920
     aatcgtaccc taatggaaaa agcacggtgt ttgttactta attcacaatt agacaaaacc      1980
     ttttggactg cagctataca aactgctgct tacttactga acaggacccc cactgtcact      2040
     ttggaccaag caaaaacccc tgccgaatat tggtatggca aaaaacctac tgtttcaaac      2100
     ttaaaaattt tcgggtgtaa agcctacgca catgttccca aacaaacacg aggaaaacta      2160
     gactcaaagg cggaagtatg cataatgcta ggctacacga aaacgggtta caagctttgg      2220
     agcatggaaa agaaaaaagt aattacaagg agggatgtag tatttgaaga ggactcggtc      2280
     aaaaaacact tcttaagtga caacgtaaca caaaacccaa aagaggaggt aaaattagaa      2340
     gaacaggatg aagaggagct ttcacaactc gatgaagatg ggaaactgaa acaagaaaag      2400
     gacgacgaac ctagagataa cgaaagtgaa aaacaagaac aaagaaggtc aaaccgagaa      2460
     agaagaaaac ctatgcgata tggaattgat gacttcggag tattggctct ctcagcactt      2520
     ggtcaaatga tcagtatacc aaacacttac gaagatgcca tccaaagtcc agatagggag      2580
     aaatggattg aagcaatgaa agacgaaata aattccatta aagaaaacaa aacgtgggat      2640
     ttagtcgaat taccagccaa caaaaatctc gttgataaca aatgggtctt tacagttaaa      2700
     acagacgaaa acggcaatgt tgtccgttat aaggcacgac ttgtcgcgaa aggctttagc      2760
     caaaaatttg gagttgatta cgaagaagtt tttgcccctg tagttaaact tcagacctta      2820
     agaaccttat tgtctgtcgc taatcataaa gactatcaca ttcactcaat ggatgtcaag      2880
     accgcattcc ttaatggata tattcaggaa gaaatataca tgcgacaacc tctcggcttc      2940
     atcaaaaatt catcctcaca tctagtgtgc aaaatgaaca aagctctcta tgggttaaaa      3000
     caagccccta gaaactggaa ccaacgtctg gatacatttt tgatctcaaa aggcttcaaa      3060
     agatctgctg cagatcattg tttgtactcc aaaatcactt tgaaaactac gttatttgtc      3120
     ataatatacg tggatgacat cattatgata agcgatgacc taggtgaaat taatgaattt      3180
     aaggcaacct tatcatcaga attcaaaatg actgacttag gtgagcttca agccttcctc      3240
     ggactttaca ttcatcgcga gaggaaagaa ggaatcttga aaattaacca aaaaaaatat      3300
     ctacaaaaaa tcctcacaaa attcgacatg gatgactgta ttccaatcaa gactcctatt      3360
     gaagcacatc ttaacgtaga tcgagaaatc gacagggtag aaaccatgaa accatatcgg      3420
     gaactcattg gatcgctgat gtacatcatg ctgggaactc gtcctgacct taacttctct      3480
     atcaactacc ttagcagatt tcagggtcac ccaacagaca cccactggtc ctaccttaaa      3540
     agagtgctca gatatctcaa atacacacag gactacgaac ttgtttataa acggaatgat      3600
     tctgatccac tgattggatt cactgattcc gactgggcta gtgataaaga agacagacat      3660
     tccacgtccg gatatgtctt cttcgcttta ggaaattgtg tttcatggtc aacaagaaag      3720
     caagccacag tggccctttc ttctaccgaa gccgaatacg cagctttgag ttttggagcc      3780
     tgcgaagcca tttggctgaa agagatactg aatttcttcc agttcaactt tgccacgata      3840
     atcatcaagg aagacaacca accatgcatc cacattgcca aaaatgccgc agaacatcga      3900
     aaaataaaac atgtggacat taaactgcac ttcattcgag aactcgtcga acaacagaag      3960
     attcaaattc aatacgtgac ttccaaggat aataaagctg acattttcac taaagggctc      4020
     ccaacgccgc attttgaaac attaagaaaa tctttgggta ttttgattaa ggggggga        4078
//
ID   Copia-2_TrVa-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-2_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-153
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 223-223 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 153 BP; 48 A; 27 C; 19 G; 59 T; 0 other;
     tgtagataaa tagtaatcaa aatctctgtc acacgtctca tgcgttgcta tggttgctca        60
     tctgaatttt cataacctta taaaaaggat gtcaacaaaa tttgtcttat taaaaatgtc       120
     tcgcatccct ttaattgttt atttttctta aca                                    153
//
ID   Copia-30_AA-I repbase;    DNA;    INV; 4056 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 24.01, Created)
DT   26-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4056
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4056
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4056 BP; 1118 A; 749 C; 1151 G; 1038 T; 0 other;
     ggttttggtc ccagtgcgtt tcgcgtagta tcatcggtcg aagtggtttg cgcgatggaa        60
     gaaaagtcgg aaaggatgtt tttgccactg tttgatggca cgaattattc cgcgtggaaa       120
     ttccgaatgg aaatcctatt agaggaacac gaacttcagg agtgtgtcag aacgctagct       180
     agtgaggtgg aatccttgaa ggaggtggtg ggtgatagcc aggatgtgaa gaaacagaag       240
     gaagtcgagc gagagaagcg agcaaaactc gatcggaaat gtaaatcact cctggtatcc       300
     cgaatccatg actcacagct cgagtatatc caggataagc tgtatcccaa agatatttgg       360
     gatgcactgc ggcgggtttt cgaacgacgc agtattgcca gtcgaatgca ccttaagcgg       420
     aggatgctga ctatgcggtt cgaaagtggt tccttgcagg agcacttctt gcagtttgac       480
     aaacttgtcc gggaataccg ttcgaccggt gctgatttag atgaactcga tgtcgtttgc       540
     caccttcttt taacgctcgg atcatcgttt tcgacagtgg taacggcgct ggaaacgatg       600
     ccggaggaaa aattatctct ggaatttgtt aattgcaggc tgcttgatga agagacgaag       660
     cgaaaaggtg ctgatttggg tgttctgaag aacgatgaaa cggctttcgc cggatcgaag       720
     cagtctcaga ggaagacgaa gattaagtgt tttgggtgta agaaggaagg tcacatccta       780
     tcagaatgtc cattcaagaa gaagaagaaa tttggcggag ataccaaatc gaaagctcat       840
     atggctggtg aaagtggtgt gtgttttgtc ggcgtgagca ggggagatga gcgacggaat       900
     gagtccagtc gaatacgatg gtatattgac tttggatgtt ccgatcacct tgtgaacgat       960
     aaatcacttc tagaagacct gaggccgttg agtgatccga tagaaattgc tattgccaag      1020
     gatggcgaat cgattactgc caagtattcc ggcactgtga aagttgtttt gcgtgtgggt      1080
     ggtaaagata gtgtatgcac tgttcaaaac gttttgtttg tgccagaact tcgttgcaat      1140
     ttattttccg ttatgcgtat agatgaagca ggtatgcgtg ttgtgtacga aggtggaaaa      1200
     gtaaaaattt accatcgatc tgaggttgtt gcatctggaa tgcgtgctgg aaagttatac      1260
     cagctagatt tttggaaaac taatcgaggc acaagtgaat cattgctaac gtgcggtcgt      1320
     gtaccgaaaa ccatggaact gtggcaccgt cgatacggac atttgaacgc caagagtctt      1380
     gatcaggttt ttcgtagtgg aatggtcatt ggagtgaatt gtcccctcga tgagaatggt      1440
     cagaacgttg tcatgtgtga gccgtgcgtt ttggggaagc aaacgcgaaa acctttccct      1500
     gtgcgtgaat cgaaaaggtc gtcgcgagtg attgaagtaa tccactcgga cgtatgtgga      1560
     ccagtaacac cagtcggtct aaacggagtt aaatattttg tgacattcat agacgactgg      1620
     tcacacttta cgatggttta cttgattgaa tcaaaggctg aagtgtttga acaattccga      1680
     aactttgaag cattagtgac agctaagttc ggaaagaaga taagccggct gcgttgtgat      1740
     aacggcggtg aataccgttg caaagagttc gtgcggttct gtaagaagaa aggcattgaa      1800
     gtgaattgga ctgtaccata cactcccgag cagaacgggg tggccgagcg gatgaaccgc      1860
     acactcgttg agaaagctcg atctatgatg ttagattcgg gaatcagcaa gcgattttgg      1920
     ggtcaggcta ttcagacggc ggcgtacctc gtgaaccgta gcccgtcaag cgcgattgat      1980
     actggtatta ctccattcga attgtgggaa agcaagaagc cgaatatttc aaacttacgt      2040
     acgttcggtt gcagtgcata tgtgcatata ccgaaagatc tccggaagaa gatggattcc      2100
     aaagcatgga agggaatttt cgtaggctac gctcataacg gctatcgtgt gtggaatgcc      2160
     aaagcgcaac gaattgtcca tgcacgggat gttgatttcg ttgaagttga tggaagaagc      2220
     gctgaagaaa aaggagtgtg ttcaagtgat gtgtttcaat tcccggttcc tgaaaagtca      2280
     ttggaagaac gattggctac tgacgatgaa gtgttggacg attcggatga cgagtttgac      2340
     agttttcgag caagtagtga tgttgagtta gaagcacagg atgaagcaag cgaagtacgt      2400
     ctggatgaac caagacaaca gcgtcaacga tgcccgccga aatggcatga cgattttgaa      2460
     atggaatacg ctgcatatgc cttgaatgcc atggggttcg tcgacgaggt tccaaattcc      2520
     ttagcggaag cacgggaaag accggactgg ctaaagtgga aagacgctgt agaggatgag      2580
     atggcatcgc tccggaagaa caacacttgg gtattgacaa agttacccaa gaattgtact      2640
     ccagtcacct gtaaatgggt attccgggtc aagcgagaca ttgatgggaa acctgaccgt      2700
     tataaggctc gtctggttgc acgtggtttc agtcaacgaa gaggtttcga ctatggtgaa      2760
     acttattcac cagtcgctaa gttggacaca ttgcggacag tattagcgat tgccaatcag      2820
     gagaacatga ttgttcatca gatggacgtg aagacggcct tcctgaatgg cgagctaaca      2880
     gaggaaatct tcatggtgca gccggaaggg tatgaagctg gtgagaatct ggtgtgtcaa      2940
     ctgaaaaagt gcctctacgg actaaagcag gcttcacgag cttggaacca gcggttccac      3000
     aactttgtag aaacacgact gaagtttgag agaagccgga atgaccagtg tttatacgtg      3060
     tggaagtcgg ataaaggaat cgtgtttatg ctgatatatg tcgatgacat agtgattgct      3120
     ggttcgtcct tgaagcttgt gaagactgtg aagcgctgtt tagctagtga gttcgagatg      3180
     acagacggtg gggaaatcag gtgtttcctc ggattgcgca ttgaccgtga tgtgaagagt      3240
     ggtgtgatgc gtataagcca gaagcaatat cttgtagaca tgctgaagcg gttcaagatg      3300
     gacgattgta agccgatttc cacccccatg gaataccggc taaagctaca gtatggtgca      3360
     gaaattgaca gaaccacaca tccatacaga gagctaatta gatgtttaac ctacgcagcg      3420
     acaacaacca ggccggattt agcagcaact gttttagcca gtatcaaagc tgcccgacgg      3480
     atcttcattg ggcttacttg aagagagtac tgcgctacgt gaaggggtcg ttagatgtgg      3540
     gcttaatata ccgtaggaac cagagtgctg taacgatgga agtgttttgt gatgcagact      3600
     gggccaatga tgttgcagac aggcgttctg tgagcggtgc tatttttaaa gtgtttggtt      3660
     gcactacggc gtggattaca cgaaagcaac aaactgtgtc tctctcatca actgaagcgg      3720
     aactggcggc actttgtgta gcggcttgtc acgagcaatg gctagtgaga ttgattcgtg      3780
     attttgggta tgatcctgga gagccagtcg tatttttcga ggacaatcag tcttcgatgc      3840
     gcattgctga agaatctaag gatttcggac gccttaaaca tgtggacgtt aagttccatt      3900
     atctccgaga cctggtacgg cagaagaaga tcgtacttca gtttgtaaca acagtagatc      3960
     agcaggcaga catgatgacg aagagtcttc ctgttgcagc gtttcgtaag cattgtgcta      4020
     gcattgggct ggccaacttc agtggttgag caaggg                                4056
//
ID   Copia-30_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   supercont1.42;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_AA_;
KW   Copia-30_AA-I; Copia-30_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.42; Positions 2422745 2422951.
XX
SQ   Sequence 207 BP; 55 A; 42 C; 33 G; 77 T; 0 other;
     tgttagaatt gcaacccctg atagtgagta gccctcattt taatttctca cagtgtgcac        60
     cttctgtgct ctttttttta ctacctaaga tgtataaggt aaacattagt attataagat       120
     aaccctgaat acatatcgac acgttttatt gagttccgta aatccgtgat ttgttccgtg       180
     ttcttgtgac catccgaaac tatttca                                           207
//
ID   Copia-30_CQ-I repbase;    DNA;    INV; 3808 BP.
XX
AC   AAWU01004727;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_CQ_;
KW   Copia-30_CQ-LTR; Copia-30_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3808
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 369-369 (2011).
XX
DR   GenBank; AAWU01004727; Positions   27475   23668.
XX
CC   'AAAAC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3806
FT                 /product="Copia-30_CQ-I_1p"
FT                 /translation="MAQYTTGNSRQVKESLFDLNIRHLETDTMADEKQKIL
FT                 LIPTFHGAVKSDYPCWKVRVLHYLKREGLSHCLEKIPAKESYAEVAQYEMR
FT                 LKDDNEVVTIIWHSIDNTAMKHVLGLVFAKQIMDKLDHVYERQGQLTLFDY
FT                 RRQLYRLNLTSFGTLTEQVTDDEKRSTLMAAIPDQFENTMDALAVMRKDDI
FT                 RKMSLDEFKGIFLDAEMKKKLTDDEVVSSLALAARRKKEERTCYRCGMAGY
FT                 TAWKCGQEPEREEFPAGRRHPSPQRYGRVSPQRSGRANASGERIVRFVDAS
FT                 PEREHGREFHQDRSNFALIVQTGPARQIAHGSTRPNALGQPEEQSARGEDR
FT                 GVQERRAGEKPAWQTAHGAPARQIAHGTTQPIALGQPEERQNRGEDQRVQI
FT                 VRREEENPAWQTAYGEAAWQIAHGLTRPNALSQPERQAARGEDYGVQEWRG
FT                 IGKPVWHTAHGEFEKRSTYLQTRLKARGQPARLVARGEDHRVQEWRGVDES
FT                 AWQIAHGLKEPNTLGQPEERQARGEDHEVQIVRRRGNQPERQIAHGREGRR
FT                 IAHVPTHLTAFGQPAMCKNRGEDRRVQNLKREVEDPERHIAQGKSEWRITH
FT                 LHTQPKALGQPLERKTHGEDRKVQNFRREVINSERQIAHGEAARQMAHVST
FT                 HSAVFGQPEEYRTRGADRRKQILRREVVGKSEWLIAHGNSAQRIGHVQARP
FT                 IALDRLSERNAKGEDRSVQQEWRRAEQPARQAAFGADKKQQSGSGAGEQKR
FT                 ARAVKMIMSSSTTDRKVLKECWPEEPRTNTTAKDSEMIIGKKRGVLKSNAI
FT                 LREQVKTLFVLILFLNLLSVSKIFSTRKRVRFDYECKFIVDKKEDDEEYDI
FT                 ECNDQALLSKSGNLAEIWHKRFHRRDTGYNSMVDGCNFEISQIEGKLVVSK
FT                 SCELRKQARHLFIIEEPVGVLPSLICQQAQQVEYNGLRHLAVVYLMRYSNL
FT                 ILEKFKELEALVYTNFLVQNSKLRLGIIEELDCLKENSICSFKVKDRESVL
FT                 MIRAKFLKMCAEASVKLPIDESGERMIGLKLTGRSWKERSNEVVRKMDFDR
FT                 LHGNTSVHVSEDQSLCIALQSYVRGALCRFGIQLNLNCMKIDVPPKKKPYQ
FT                 TVCYFSRFQNCATERHWSGLQQVLRYLRGTTKLFVLNDALDDKVIDNMFSW
FT                 SSKRQKPSISSTEAKSASSCNAAKEGSWMSSQLEYYTFYKDQHCRGARRTS
FT                 TIEEHRHRLRPAGHDTSGETEGRICAEYRTTCRHTYEAVRKTTIREDIRIS
FT                 LIESLRG"
XX
SQ   Sequence 3808 BP; 1136 A; 763 C; 1103 G; 806 T; 0 other;
     gtatggccca gtacactact ggaaatagca ggcaggtgaa agaatcgttg tttgatttaa        60
     atatcagaca tttggagacc gatacgatgg ctgatgagaa gcagaaaatt ctgcttattc       120
     cgaccttcca tggagcagtc aagtctgact atccgtgttg gaaggtgagg gttctacact       180
     atctcaagcg agaagggttg tcccattgct tagagaaaat accagcgaag gaaagctatg       240
     cggaagttgc gcaatacgag atgcggctca aggatgacaa tgaggttgtc accatcattt       300
     ggcactcgat tgacaacact gctatgaaac acgtgcttgg attagtattt gccaagcaga       360
     tcatggacaa gcttgatcac gtgtacgaac gtcaggggca gctgacactg ttcgattacc       420
     gtcggcagct gtaccgtctt aacctgacga gtttcggcac cctgaccgaa caggtgacgg       480
     acgacgagaa gcggagtact ctgatggcgg cgattccaga tcagttcgag aacacgatgg       540
     acgctctagc cgtgatgagg aaggacgaca tccggaagat gtccctggac gagttcaagg       600
     gtatattctt ggacgccgag atgaagaaga agctgactga tgacgaagtt gtatcaagcc       660
     tagcgttggc agcaagaagg aagaaggagg agcggacatg ttatcgctgt ggcatggctg       720
     gctacacggc ctggaaatgt gggcaagagc cagagcggga ggaatttcca gctggccgac       780
     ggcatcccag cccgcagagg tatgggagag taagtccgca gagatccggg agagctaatg       840
     cctccggaga gcgcatagtc cgatttgtgg atgcgtcacc agagcgcgaa catggacgtg       900
     agtttcacca ggatcgctcg aatttcgcac ttattgtgca aactggacca gcgcggcaga       960
     ttgcccatgg atcgacccga ccaaatgcac ttggtcagcc agaagagcaa tctgctcgtg      1020
     gcgaggaccg cggtgtgcag gagcggcgag cgggggaaaa accagcgtgg cagactgccc      1080
     atggtgcacc agcgcggcag attgcccatg gaacaactca gccgattgca cttggtcagc      1140
     cagaagaacg tcagaatcgt ggagaagacc agagagtgca aattgttcgg cgagaggaag      1200
     aaaatccagc atggcagaca gcctatggtg aagcagcgtg gcagattgcc catggattaa      1260
     cccggccgaa tgcacttagt cagccagaga gacaagcagc tcgtggcgag gactacggtg      1320
     tgcaggagtg gcgagggatt ggcaaaccag tgtggcatac agcccatggt gaattcgaga      1380
     agcgtagtac ttatttacaa acccggctaa aggcacgtgg ccagccagcg aggcttgttg      1440
     ctcgaggcga ggaccataga gtgcaagagt ggcgaggggt agatgaatca gcgtggcaga      1500
     ttgcccatgg attaaaagag ccgaatacac taggtcaacc agaagagcgt caggctcgtg      1560
     gagaagacca cgaagtgcaa attgtacggc gaagaggaaa ccaaccagag cggcagattg      1620
     cccatggcag agaagggcgg cgaattgccc atgtaccaac ccatctgaca gcatttggtc      1680
     aaccagcgat gtgtaaaaat cgtggagaag accgcagagt gcagaattta aagagagagg      1740
     ttgaagatcc agagcggcac attgcccagg gcaaatcaga gtggcgtata actcatttac      1800
     atacccagcc gaaggcactt ggtcaaccat tggagcgtaa gactcatggc gaggaccgta      1860
     aagtgcagaa ttttcgcaga gaggtaataa actcggagcg acagatagct catggcgaag      1920
     cagcgcggca gatggcccat gtatcaactc actcggcagt gtttggtcaa ccagaggagt      1980
     accgaactcg aggagcagac cgaagaaagc agattttacg gagagaggta gtaggaaaat      2040
     cagagtggtt gattgcccat ggtaattcag cgcagcgaat cggtcatgta caagcccggc      2100
     cgatagcact tgatcgatta tcagagcgga atgctaaagg agaagataga agcgtgcagc      2160
     aggaatggcg aagggcagag caaccagcaa ggcaagcagc ctttggtgcc gacaagaaac      2220
     agcagtcagg gagtggtgcg ggagagcaaa agcgagccag agcggtcaag atgatcatga      2280
     gctcgagtac caccgaccgt aaagtcctga aggaatgctg gccagaggaa ccaagaacaa      2340
     acacgaccgc gaaggacagt gagatgataa tcggcaagaa gagaggagtg ttgaagtcaa      2400
     atgccatatt gagagaacaa gtaaagacac tttttgttct aattttgttc ttgaacctct      2460
     tgtccgtatc aaagatattt tccactagga agcgagtgcg ttttgactac gagtgtaagt      2520
     ttatcgtaga caagaaagaa gatgatgagg aatatgatat tgagtgcaat gatcaagctt      2580
     tgttgagcaa atcagggaat ttggctgaga tctggcacaa acggttccat cgtcgtgata      2640
     cgggctacaa cagcatggta gatggatgta attttgaaat ttcgcagatt gaggggaagc      2700
     tggtggtcag taagtcttgt gagttgagaa aacaagccag acacctcttc ataatcgaag      2760
     agccagtggg agtgctgccc agtttaatct gtcagcaagc gcagcaggtt gaatacaacg      2820
     gcttgaggca cttagcggtt gtttatctga tgaggtattc gaatttgatt ttggagaagt      2880
     ttaaggagtt ggaagcattg gtttatacta attttctcgt ccaaaattcg aagttacgat      2940
     taggtattat agaagaactt gattgtttga aagagaactc catttgttcg ttcaaagtca      3000
     aggaccgtga aagtgtgcta atgattcgag ccaaattttt aaagatgtgc gcagaggcaa      3060
     gtgtgaaatt gccgatcgat gagagcgggg agagaatgat cggattgaaa ctaacaggtc      3120
     gcagctggaa ggaacgatct aatgaggttg tgaggaagat ggacttcgac agacttcatg      3180
     gcaacaccag cgttcatgtt tctgaggatc aatcgctctg catcgctcta caaagctacg      3240
     tgcgaggggc actgtgtagg tttggaatac aactgaatct taattgtatg aagatcgatg      3300
     ttccccctaa gaaaaagccg taccaaactg tatgctattt cagcagattt caaaattgtg      3360
     caacagaaag acattggtct gggttgcagc aagttttgag atacctacgt ggtacaacta      3420
     agttgtttgt tctaaacgat gctctagatg acaaggtgat tgacaacatg ttttcttggt      3480
     catcgaagcg gcagaaacct agtatttcgt cgacagaagc gaagtcagcg tcttcgtgca      3540
     acgctgccaa ggaagggagc tggatgagca gtcaacttga atattacact ttctacaagg      3600
     accagcattg cagaggagct aggagaacat caacaatcga agaacatcga catcgacttc      3660
     gacctgcggg acatgataca agcggagaaa ctgagggtag aatatgtgct gaatatagaa      3720
     caacctgcag acatacttac gaagctgtta ggaagacaac aattcgagaa gatattagaa      3780
     tttctttgat tgaaagtttg aggggaag                                         3808
//
ID   Copia-30_CQ-LTR repbase;    DNA;    INV; 373 BP.
XX
AC   AAWU01004727;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_CQ_;
KW   Copia-30_CQ-I; Copia-30_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-373
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 370-370 (2011).
XX
DR   GenBank; AAWU01004727; Positions   23667   23295.
XX
SQ   Sequence 373 BP; 136 A; 59 C; 67 G; 111 T; 0 other;
     tgttgacata tacaaacttt tcaacattgg aaccacccca gctagtaata gaattccgag        60
     aaccactcta ggttactcgc gagcttagta gacacagtat actgaattta tagtaagcta       120
     atagagcttt atggcaaact acaattaagt agtatttgaa gaagtggtgt aagtgacaca       180
     tacatgtaaa tagtaatatt aagtaaaatg tgaattatgg tatgtaacga taacggaaca       240
     tgtaaaagat tgttgatagg attaggatta atttaataaa actatcttct gaatgcactt       300
     gaagcaagac ttgaattctt attctacgca taagatcaca acctggtttt ccggtagcac       360
     gtaaccttca aca                                                          373
//
ID   Copia-30_SI-I repbase;    DNA;    INV; 4475 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   24-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_SI_;
KW   Copia-30_SI-LTR; Copia-30_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4475
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 434-434 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [1737-2270] - Integrase core
CC   'AATA' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(240..3410,3370..4296)
FT                 /product="Copia-30_SI-I_1p"
FT                 /translation="MSEERRTTLKNLISIPVFDGINFASWKFRLTTILEYK
FT                 DCQEPARRERAATDNEDTWKKSDLKAKTILISAISDKQLEYISECKTTFEM
FT                 MSKLEKMYSTKSTSLQIINRGKLEEVKLKNYSNVEEFFVDFEKACNELKSA
FT                 GGQLREEEKMRYLIKALPPNYCYIGDFIDLVPEEQRTVEYVKTKIXEKNLS
FT                 KSESEKKTNVSTFAIKTKGSCFLCGKYGHNKSDCWQGQQGKQGRETQHNQG
FT                 RGAQGYHRGQREPSRGRGRGTSQRGYGRGRGQGHQAAGPSSEHHKENSQES
FT                 WATQVVSINVNDVMKNTTRNDNEIEWLLDSGCTDHIINNKDYFCKYVELKS
FT                 PIDVKLPDGKNLKATKLGTVKTYFKNYFNEVEVDLKNVYFVKGIKRNLLSF
FT                 SKITENNTIVARGHNAKIYNKDRKLTAVADKINGLYIMKSFLYDSGKNDIY
FT                 ANALKLTDKEKWHRALGHVNFQYLNKLVKSKLVEGLPDKLENNIMKCANCI
FT                 QSKMANVPFENERTQSTEILELIHTDLNGPHSTTGCGGEKYFLTFIDDYSK
FT                 CAKIYCIKSKAETASCFIEFTNLVENQFNKKIKKLKCDNGKEYLNREIYNF
FT                 VKHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLAREAKINLRYWPEIM
FT                 KTVAYLKNRTIANTLENKTPYEIFFSKKPNVKHLKIYGSRVFVRIPEISRK
FT                 NKWDDKAKLGILVGYNDNSYRVLVNNKIINARHVRVVEEGTELICLEKTND
FT                 NENRTSDDDNVINLKLENETNENNNEFDSEMNRNNVDKGDELDSDTDIESE
FT                 QKNESNDLQNKNENPIEKKVLSRKRNPVNRFGNPITHYIYVNYVNASVPNT
FT                 FEEAINSRESKEWKKAMSSEIESLKKNKTWTVVDRPKNRKIIDVKWIYKRK
FT                 IDNTYKARLVVRGFQQNEYLENAYSPVGKMQTFKVLLSYCCANNLFIEQMD
FT                 VETAFLNGIVKSEVYINEPLGYETGRNKVCKLQKALYGLRESPRAWYDCFN
FT                 KYVENLNFVRSNYDYCLYVNDTSKDPIYILVFVDDLLICCKNKIKINEVKS
FT                 FAVKIKLKLMKLKASLKQRFSMKDLGKIGNYIGIDIDYSDDRKGMTLSQTK
FT                 YIESLAVKYNLGNAKLYDTPMESNLKLEQATEIDERIKYRNLIGELLYIST
FT                 GTRPDIAYSVNLSRFQSCYEQTHLKYALRILKYLYKTKDLKLTYSDKNVKD
FT                 EKLDCMVDSDYAGDNIDRKSTTGFIIRLCGNLIYWKTRKQNTVSKCSTFAE
FT                 YIAMSEAVTEVLFLRNLLNESFDLKIEQPIKIYEDNSGAVAIAKFGNYTKN
FT                 SKHXKVQYHYINENYENGVVDIVKIDSECNLADXLTESLDKAKFVKNRKAL
FT                 KVI"
XX
SQ   Sequence 4475 BP; 1810 A; 584 C; 908 G; 1169 T; 4 other;
     aataacgaga atattacgac atggtagcag agcgtggttg aagaaaatca caggagcccg        60
     atgtagttga ggaaaaatac aattgataat taaaagtaaa aataattgta ataacgaaaa       120
     cggaaaaaca gtgtggatta catccgagca cgaggtcgat gcatgcggat atagatcgtc       180
     agcacgaagt gatcaacgtg aggactgagt gagcacatga agattcagtg gccaaacaca       240
     tgtccgagga acggagaacg accttaaaga atttaataag tattccagtg tttgatggaa       300
     taaattttgc aagttggaaa ttccgactca cgactatttt ggaatataaa gattgtcaag       360
     aaccggcaag acgagaaaga gcagctaccg ataacgaaga tacttggaag aaaagtgatc       420
     tcaaagcaaa aaccatttta atcagtgcca tatcagataa gcaattagaa tacattagcg       480
     aatgtaaaac gacgtttgag atgatgtcaa agctagaaaa aatgtattca acaaaatcga       540
     catctctgca aataataaac cgaggaaaat tggaagaagt caagttgaag aattacagta       600
     atgtggaaga attttttgtc gattttgaaa aggcctgtaa cgagttgaaa tcagctggcg       660
     gacaactgag agaagaagaa aaaatgagat atttaattaa agctctacca ccaaattatt       720
     gctacattgg agattttatt gatctagtac ctgaagagca aagaactgtc gagtatgtca       780
     aaactaaaat taangaaaag aatttgagca aaagtgagag tgaaaagaaa acaaacgtga       840
     gcacttttgc aataaaaacc aagggaagct gtttcctgtg tggaaaatat ggacacaata       900
     aaagcgactg ctggcaagga cagcaaggaa aacaaggcag agaaactcaa cataaccagg       960
     gcagaggagc tcaagggtat caccgaggtc aacgagaacc atcgcgaggc agaggcagag      1020
     gtacgtccca aagaggctat ggtcgaggca gaggacaagg tcatcaagcg gcaggaccat      1080
     ccagcgagca tcacaaggag aactcacaag agtcatgggc aacgcaagtc gttagtataa      1140
     atgtaaatga tgttatgaaa aatacgacca gaaatgataa cgaaattgag tggctgttag      1200
     atagtggttg tacagaccac attatcaata acaaggatta tttttgtaag tacgttgaat      1260
     tgaaaagccc tattgatgta aaattacctg atggcaaaaa tttgaaagca acaaagctgg      1320
     gtacagtcaa aacttatttc aaaaattatt ttaatgaagt agaagtcgat ttgaaaaatg      1380
     tttattttgt aaaaggtata aaaaggaact tactgagttt ttctaaaata actgaaaaca      1440
     atactattgt agctagagga cacaatgcta aaatctataa taaagataga aaattaacag      1500
     ctgttgccga taagattaat ggtttataca ttatgaaaag ttttctttat gatagtggga      1560
     aaaatgatat atatgcaaat gcactgaaac tgacagataa agaaaaatgg cacagagcgt      1620
     taggccacgt aaattttcaa tatttaaaca aattggttaa gagtaaatta gtagaaggct      1680
     taccagataa attagaaaat aatatcatga aatgtgcaaa ttgcattcaa agtaaaatgg      1740
     ctaatgtacc gtttgaaaat gagaggactc agtccactga aattttggaa ttaattcata      1800
     cagatttgaa tggcccacat agcaccaccg gttgtggtgg cgaaaaatac tttttgactt      1860
     tcatagacga ctatagtaaa tgcgctaaaa tttattgcat taaaagtaaa gcggaaaccg      1920
     caagttgctt catagaattt acaaacttgg ttgaaaatca atttaataag aaaattaaga      1980
     aattgaaatg cgataatggc aaggaatacc taaatagaga aatttacaat tttgtcaaac      2040
     acaaaggaat tgaattgttg ccatgtcctc cttatgtgca cgaattaaat ggagtcgcgg      2100
     aaagatataa taggtccgca atggacatag gtagatgttt agcaagagaa gcaaaaatca      2160
     atctcagata ctggcctgaa attatgaaaa cggtcgctta tttaaaaaac cgtacaatag      2220
     ccaacacgct agaaaacaaa actccgtacg agatattttt cagcaaaaaa cctaatgtaa      2280
     aacatttgaa aatttatgga agtagagttt tcgtgagaat acccgaaatt tcgaggaaaa      2340
     ataaatggga cgataaagca aaattaggga tattggtagg ttacaatgat aacagttata      2400
     gagtcctggt aaataacaaa ataattaatg ctagacatgt tagagtagtt gaagagggca      2460
     cagaactaat ttgtttagaa aagactaatg ataatgaaaa cagaacgtct gacgatgata      2520
     atgttataaa tttaaagtta gaaaatgaaa ctaacgaaaa taataatgag tttgacagcg      2580
     aaatgaatcg aaacaatgta gataagggag atgagctaga tagtgatacg gatatcgagt      2640
     cagaacagaa aaatgaatca aatgatttgc aaaataaaaa tgaaaatcca atagaaaaaa      2700
     aggttttaag cagaaagaga aatcctgtaa acagattcgg caaccctata acgcattata      2760
     tttatgtaaa ctatgttaac gccagcgtac ccaatacatt tgaggaggcg ataaactcca      2820
     gagaatctaa agaatggaaa aaagctatga gttcagaaat agaaagttta aagaaaaata      2880
     aaacatggac agttgtagat agaccaaaaa atcggaaaat tatagatgta aaatggattt      2940
     ataaaaggaa aatcgataat acgtataaag ctagattagt tgtaagaggg ttccagcaaa      3000
     atgagtatct tgaaaatgct tactcacccg taggcaaaat gcaaactttt aaagttctgt      3060
     taagctattg ttgcgcaaat aacttattta ttgagcaaat ggatgttgag acagcatttc      3120
     tcaatggtat tgtaaaatca gaagtatata ttaatgaacc tctnggttac gaaacaggac      3180
     gaaataaagt atgcaaattg caaaaagctc tttatggtct tagagagagc ccgagggctt      3240
     ggtacgattg ctttaataag tatgtcgaaa atttgaattt tgtcaggagc aattatgact      3300
     actgtttata tgtaaacgac acaagcaaag atccaatata tatcttagtt tttgtcgatg      3360
     atcttttgat ttgctgtaaa aataaaatta aaattaatga agttaaaagc tagtttgaaa      3420
     caaagatttt ctatgaaaga tttaggtaaa atcggtaact atataggaat cgatatagat      3480
     tacagtgacg atagaaaagg aatgacattg agtcaaacaa aatatattga atctttggct      3540
     gtaaaatata atttaggaaa tgccaaattg tatgatactc ccatggagag taatttaaaa      3600
     ctggaacaag ctacagagat tgatgagaga ataaagtata gaaatttaat tggtgaatta      3660
     ctgtatatta gcacaggtac aagaccagat attgcttaca gcgtgaactt aagtagattt      3720
     caaagttgct atgagcagac acacctcaaa tatgctctaa gaattttgaa atatttatac      3780
     aaaactaaag acttgaaatt aacttactct gataaaaatg tgaaagatga aaaattggac      3840
     tgtatggttg attcggacta tgcaggcgat aacatcgatc gaaaatctac aactggattt      3900
     ataataagat tatgtggcaa tttgatttat tggaagacac gtaagcaaaa tacagtatcc      3960
     aaatgttcaa ctttcgcaga atatattgct atgtcggaag cagtgacaga agttttattt      4020
     ttgagaaatt tactgaacga gtcgtttgat ttaaagatag agcagccgat aaaaatttat      4080
     gaggacaact caggcgcggt agcaattgca aaatttggca actatacgaa aaattcaaag      4140
     cacancaaag tgcaatatca ttatattaat gaaaattatg aaaatggcgt ggttgatatt      4200
     gtgaaaatcg attctgaatg taacttggcc gacatnttaa cggaaagtct ggacaaagca      4260
     aaatttgtta aaaataggaa agcgctgaaa gtaatttgaa tcatgttggt attaaacgca      4320
     gattaaaaag tttaagttta aaattttgaa tatatgttag taagtaagaa accaaataat      4380
     gtatgcgaaa cttgaaaatg attatacgat tgaatgtaag aaaacaaaaa ttaccgaatt      4440
     atgatgttga aaattcaagg aggcgtgttg gaata                                 4475
//
ID   Copia-30_SI-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-30_SI_;
KW   Copia-30_SI-I; Copia-30_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-322
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 435-435 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 322 BP; 103 A; 60 C; 75 G; 84 T; 0 other;
     tgtgaatatt tcaacattac atattaaaag gtttagataa aagcacccgt ggttccatct        60
     attgacggaa tgagtcaaaa gacactcacg ttgggcgagc gtgtttgcga cgagaggaat       120
     gtaagtacgg acactactag tcggtcggtc gtcggcgtta tacgcaccgc acgtagattc       180
     gaagtgcgag aaacttgccc aagccgaata agcgagattc agtcgttatg tacaatgttg       240
     attgtgttat cgaagcagtg aataaattat tcaagccaaa tatagaaaat gagtatccca       300
     tttatttaac gagtcacgac ca                                                322
//
ID   Copia-31_AA-I repbase;    DNA;    INV; 4111 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.01, Created)
DT   14-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-31_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4111
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4111
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 79-79 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..4101
FT                 /product="Copia-31_AA-I_1p"
FT                 /translation="MEEESKSFRIKPFDGVGFNNWSFRMRAYLQQLEVLHC
FT                 VERSAEEEEFWNTPETATAEVKAANEIRMAARVRQDNKCRSVLIQAVADSH
FT                 LEYVKDKVSPKQIWDGLHDIFERKSITNRFLLKRQLLSMRYNESDKLQDHF
FT                 LRFDQLVREIKGAGARMDEEDVICHLMLTMPESFDAVTTAMEAISERLTMD
FT                 LVRRKYLDVEAKRRGQRLETDTETSAFVGKSKGKLKCFGCGELGHKRAQCP
FT                 KFSEKKNSVPKPAKKGDMQKANVGARTVSFVAAETHQAVAASSKVSEVRWF
FT                 LDSGASDHMSNDKSLFSSMVKLDRPVEILTAKNGVSLLAAYKGRVCASALV
FT                 DGEKIQITMDDVLYIPDLSLNLLSLRRLENSGKRVVFFGGKVSVEDEEGVV
FT                 ATGRQLGRLYCMDLVCENAKPEEKALVSGRVCKSLEVWHYRFGHLGNENLM
FT                 KLVRKEMVDGMPVDFGRGKSEKFVCEPCISAKQTREPFESRPEKRASRPLE
FT                 IVHSDVCGPITPLSWDGHAYFVTFTDDYTHMAVVYLMKHKNEVLDRLIDYE
FT                 AMVTAHFGTKIARLRSDNGGEYTGRAVKKFCRQKGIRLEVTVPYTPEQNGV
FT                 SERLNRTAVEKVRAMLEASQLPKNMWGEALYTAVYLLNRSPSVAVQGDITP
FT                 YEAWYCKRPNVSNLRVFGSECFVHVPKALRKKLDAKSQKAIFVGYAPNGFR
FT                 CWDGEKVFVARDVVFNESQFGKSVAINKNTEDEGVIITERSCIPEGLGVRN
FT                 AGSRHENSRAPSEAVEDWESADEQLEGAVGSSDTGPEEGEEEIVNVRRSGR
FT                 AINPPRWLSDYDMDTTEDMTAFALSAEEFVENIPSDVETLKTRSDWPMWKK
FT                 AIDEELASLEKNNTWTLVELPEGRKLVDNKWVFKVKRNSDGKVERYKARLV
FT                 ARGFSQRRGFDYVDTYSPVVKMTTLRVLLALANQNDWEVHQLDVKCAFLNG
FT                 VLEEEVFMRQPSGFERGGRLVCKLNKAIYGLKQASRRWNLRFHQFMVRLQF
FT                 NQSEYDVILYVIIYVDDILVIGNSLQAVQELKAKLCDEFESRDLQEVKSFL
FT                 GLNIHRDRKAGVLTVDQRVYVNSVLERFGMSNCKPSVIPMEPGLKLEKNKE
FT                 AKEVTSKPYRELIGCLMYLMVTSRPDICAAVNYFAAFQSCATEEHWVHLKR
FT                 VLRYLRGSMDCKLVYCRRDRSSVLEAYADADWGNDPNDRRSISGFVIKLYG
FT                 SVVAWATRKQSSVALSTTEAELMALCSTSCELIWLANLLSSIGCVVMEPVN
FT                 IFEDNQPCIALIVDPGKQKRLKHVDIQSFFVRELVESGKVRLVYLPTEQQI
FT                 ADVMTKGLAGPRFRMLRGLLGIIN"
XX
SQ   Sequence 4111 BP; 1104 A; 784 C; 1226 G; 996 T; 1 other;
     ggttatgtgt ccagttttcg cgcgatcaaa gtttttcggt gatttttcgg ttttccggga        60
     gtagttcgcg aaaagaaaac tttgctgtac gagatggaag aggaatctaa aagtttccgc       120
     atcaaaccgt tcgatggagt cggtttcaat aactggagct tccgaatgcg ggcttacctc       180
     cagcaattag aagtgctaca ttgcgtggag agaagtgcgg aagaagaaga gttttggaat       240
     actcctgaaa cggcgacggc agaagtgaaa gcggcgaacg agatccggat ggcagcgcga       300
     gtgcggcaag acaacaagtg tcggtctgta ctgatacagg cggtggcgga cagccacctt       360
     gaatatgtca aggataaggt gtccccgaaa cagatctggg atggtctgca cgatatcttc       420
     gagcggaaga gtattaccaa cagatttttg ctcaagcggc aactgctctc gatgcgatac       480
     aacgaaagtg acaagctaca ggatcatttt ttacgattcg atcagctggt gcgagagata       540
     aagggagccg gtgctcgaat ggatgaagag gacgtaattt gccacctgat gttaacgatg       600
     ccagaatcgt ttgatgctgt caccacagcg atggaagcta tttcggaacg attgaccatg       660
     gatttggtgc gtcggaaata tctcgatgtt gaggccaagc gacgaggcca gcggctggaa       720
     acggatacgg agacttctgc cttcgttggc aaatccaaag gcaaactgaa atgtttcggc       780
     tgcggggagc tcgggcataa acgagcgcaa tgtccaaagt tcagcgagaa gaaaaacagt       840
     gtgccgaagc cggcgaagaa aggtgacatg caaaaggcaa atgtgggagc aagaacggta       900
     tcgtttgtgg cagccgaaac ccaccaggcg gtggccgcgt ctagtaaagt gtctgaggtg       960
     cgctggtttt tggacagtgg ggcctctgat cacatgtcca acgacaagtc actgttttcg      1020
     agcatggtta agttggatcg tccggtcgaa attctaactg ccaagaatgg tgtgagtttg      1080
     cttgctgctt acaaaggccg tgtttgcgct agtgctttgg tggatggtga aaagatccag      1140
     atcacgatgg atgacgtgtt gtatattccg gatttgtcac tgaacttgct ttcgttgcga      1200
     cggttggaaa attccgggaa aagagttgtg tttttcggcg gaaaagtgag tgtcgaagac      1260
     gaagagggcg tagtggctac cggaaggcaa cttggacgtt tgtactgtat ggatcttgtg      1320
     tgtgaaaatg ccaagcctga agaaaaagcg ctagtgagtg gacgggtatg taagagcttg      1380
     gaagtgtggc actaccgatt cggccacctc ggcaatgaaa atctcatgaa gcttgtgcgg      1440
     aaagaaatgg tcgatggaat gccggttgac ttcgggcgcg gtaaatctga gaagtttgtg      1500
     tgcgaaccgt gcattagtgc gaagcagacg cgcgaaccgt tcgagtcgcg accggaaaaa      1560
     cgtgctagta ggcctcttga aatcgtgcac agtgatgttt gcggccccat caccccacta      1620
     tcgtgggatg gccatgcgta ttttgtcacg tttaccgacg attacacgca tatggctgtg      1680
     gtttacctca tgaagcataa gaacgaagtg ttggaccggc tgattgacta cgaggcgatg      1740
     gtgacggcgc atttcggaac gaagattgcg cgtctccgaa gtgacaatgg cggtgagtat      1800
     accggaagag ctgtgaagaa gttttgcagg cagaaaggta ttaggctgga agtaacagtg      1860
     ccgtatacgc ctgaacaaaa cggggtcagc gaaaggctga accgtacggc agtagaaaaa      1920
     gtgcgcgcga tgctagaagc cagtcagctt ccgaagaaca tgtggggtga ggcgttgtat      1980
     accgcagtat atctgcttaa tcgcagtccg agtgtggcgg tgcaaggtga cattacgccg      2040
     tacgaagcgt ggtattgtaa aaggccaaac gtatcgaatc tacgcgtatt cggaagtgag      2100
     tgttttgttc atgtcccaaa agcgttaagg aagaagcttg atgccaaaag ccagaaagca      2160
     attttcgtgg gctacgcgcc aaatggtttt cggtgctggg atggtgaaaa agtgtttgtg      2220
     gctagagatg tcgtctttaa tgagtcacaa tttggaaaaa gtgttgcgat taacaaaaat      2280
     accgaagatg agggagtgat tatcacggag cgttcgtgta tacccgaggg tcttggtgtt      2340
     cggaatgccg gatcgcgaca tgagaacagt cgtgcaccca gtgaagcagt ggaagactgg      2400
     gagtctgctg atgaacagtt ggaaggagct gtcggaagtt cggacacagg tccagaagag      2460
     ggtgaggaag aaatcgttaa cgtgagaaga agtggtagag cgattaaccc acccagatgg      2520
     ttgagtgatt atgacatgga tacaaccgag gatatgacgg cgtttgcact aagtgcggaa      2580
     gaatttgttg aaaacattcc gtcggacgtt gaaacgctga aaacaagaag tgattggccc      2640
     atgtggaaga aggccattga tgaagaactt gcatcactgg aaaagaataa cacttggact      2700
     cttgttgaac tgccggaagg tcggaaactc gtggataaca agtgggtatt caaagttaaa      2760
     cgaaacagtg atggaaaagt ggaacgatac aaagccagac tagtggcgcg cggtttttcg      2820
     cagcgacgag gctttgatta tgtggacact tactctccgg tagtgaaaat gaccaccctg      2880
     cgtgttttgt tggctctggc caatcagaat gattgggaag tgcatcagct agacgtgaag      2940
     tgtgcattct tgaacggcgt gctggaagaa gaagttttta tgcgccagcc gtctggtttt      3000
     gagcggggag gtagactggt ttgtaaactg aacaaggcga tatacggact aaagcaggcg      3060
     tcgagaaggt ggaatttgcg tttccatcag tttatggtcc ggttgcagtt caatcaaagt      3120
     gaatatgatg ttatcttgta cgtaatcatt tacgtggacg atatactcgt tatcgggaat      3180
     tcgttgcaag cggtgcaaga gttgaaagcg aaactttgtg atgagtttga atcaagagat      3240
     cttcaggagg tgaaatcgtt tctcggtttg aacatacacc gcgatcgcaa agcaggagtt      3300
     ctgactgtag accagcgtgt ttatgtgaac agcgttctcg agcgtttcgg aatgagtaac      3360
     tgcaagccgt ctgtcattcc catggaacct ggtctgaagc ttgagaagaa taaggaagca      3420
     aaggaggtga catctaagcc gtatagagag cttatcggct gtctgatgta cctaatggtg      3480
     acatccaggc cggacatatg tgcggccgta aactactttg ctgcgttcca gagttgtgct      3540
     acggaggagc attgggtaca cctaaaacgg gttttacgct atctccgagg atcgatggac      3600
     tgcaagctcg tgtattgtcg acgagaccga tcaagtgtgc tggaggcgta tgctgatgcc      3660
     gattggggta atgacccgaa cgatcggcgc tcaatttctg ggttcgtaat caaactgtat      3720
     ggatccgtcg ttgcttgggc taccagaaaa cagtcatcgg tagcgctttc tactacggaa      3780
     gcggagctga tggcgttgtg ctcgaccagt tgcgagctga tatggttggc waacttgctc      3840
     agctcaattg gatgcgtcgt catggaacct gtcaacatct tcgaggacaa tcaaccttgt      3900
     attgctctca tagttgatcc aggaaagcag aaaaggttga aacacgttga tatccagagt      3960
     ttcttcgtcc gtgagttggt ggaatcaggt aaggtccgtc ttgtgtacct gccaactgaa      4020
     caacaaattg ctgatgtcat gacgaaaggt ttggctggac caaggttcag aatgcttcgt      4080
     ggattgctgg gaataatcaa ttgaggggga a                                     4111
//
ID   Copia-31_AA-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   14-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-31_AA_;
KW   Copia-31_AA-I; Copia-31_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-150
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 957-957 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 150 BP; 50 A; 22 C; 22 G; 56 T; 0 other;
     tattgagtgt aacaatcttt tactcaaaat ccaattgatt cactttgaca gtgtaaagaa        60
     gagaaacgtc aataaaattc attatgttgt tgttcttatc gaatccgcac gtgttttgtt       120
     ttctctgcta attgaaagta aaattcaata                                        150
//
ID   Copia-31_CQ-I repbase;    DNA;    INV; 4311 BP.
XX
AC   AAWU01021680;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-31_CQ_;
KW   Copia-31_CQ-LTR; Copia-31_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4311
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 371-371 (2011).
XX
DR   GenBank; AAWU01021680; Positions   40189   44499.
XX
CC   Positions [1433-1969] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..3883
FT                 /product="Copia-31_CQ-I_1p"
FT                 /translation="MAHATGPSPVVERLLGRENWCTWKFGMQTYLETEELW
FT                 EAVEPNLKDDGTPEAIPKAKDRKARGKIILGLDPSLYVHVQGTTTAKGAWD
FT                 KLEQTYEDNGLTRRWGLLHKLMTMNLTNSVSMEAYVTRMVATANQLGGVGF
FT                 PISEEWVGMLLLAGLPQSYKPMVMALQNSGSKITGDLIKTKLLQEDHEPME
FT                 TIEPAFAVKGKPSYKQENIGKPQSKGPKCHSCHKFGHIARDCPAKSSSKPP
FT                 ERKGGSKPGRAFGAVLTTMDEMKSEDWFFDSGATCHLTRTKSLLRDAHQAD
FT                 GKMFAANKGEMQVVAEGTAVLHPTCGEEIDVNGVQLIPELVVNLLSVGKIV
FT                 DSGHTVVFGQKGCEVLDLEGTCIATGSRSNGLFKLEQDVPKVLVCQPTTVE
FT                 LWHKRTGHLSIKNLTRLRNGMVTGVQFLEADSAAGCKICPMGRQTRLPFNK
FT                 SGTRATEVLELVHSDICGPMEQVSIGGSRYYITFIDDRTRKMFIYFLRHKS
FT                 EEEVTRCFKDFHSMSERQTGHKLKVLRTDNGTEYKNKGFEKLLSQLGIRHQ
FT                 TTVEYTPEQNGLAERANRTIVEKARCLLFEANLPKTFWAEAAAVAVYLINR
FT                 SPCTGIQTTPEEAWTGRKPDLSNLRVFGTTTMAHVPKQKRRKWDPKAVECI
FT                 LIGYDEETKGYRLYNVKSKQIFMSRDVTFLDEGLADCDGRTTLKATNGPQS
FT                 TYVRLDFEELVQEPEPVREPEPAQEPEPAQEPEQVEEEEASDTSSDEFEDA
FT                 DDSVTLPALPPRQSSHPPQSQALRRSGRERAIPGKYKDFNVQCSGKRSSRV
FT                 SDAPMMDGSSTSAARLENAASTAPPSSSNQRPVDDVFQHGLMLNDRGCPPH
FT                 GKYSHVDVHDGDTGSNCSQRNLDDPCTHQEALTRDDSDRWRRAMQEEYDAL
FT                 ISNGTWEMTELPADRKAIRCKWVYKTKVDADGKVDRYKARLVIKGYSQRKG
FT                 VDYEETYSPVVRHSSLRYLFALAARMNLQIDQMDAITAFLQGELTEEIYME
FT                 QPPCFDDQDKTNVCRLKKALYGLKQSSRVWNLKLDAALKKFGLTCADYDPC
FT                 VYYKVVGEKVLFLALYVDDLLIFSNCKRWRKEVKDQLCGEFRMKNIGPAKH
FT                 VLGIRVSRTKDSVSLDQEAYVEFVLARFQMSNCKPVATPMNAAENLTKSME
FT                 PTDPEEAKRMANVLYKEAVGCLMYLGQCTRPDICHAVNVLCHFNDNPGDKH
FT                 WNAVKHLMRYLRGTSKFKLTYRKDGNADIKGYTDADWAADCEGR"
XX
SQ   Sequence 4311 BP; 1114 A; 1057 C; 1255 G; 885 T; 0 other;
     ggtgtgggtg gaaagtgtct aagcttctag aagattgaaa attttcgcaa gaagttttcc        60
     caagaatttt aaacaagaag ttcacgcaag cagttttcct gaagaaccgt tttcctcaag       120
     aatggcgcac gctacgggac catctccggt cgtcgaacga ttgctcggca gggagaattg       180
     gtgcacgtgg aaatttggta tgcagaccta cttggaaacg gaggagctgt gggaagctgt       240
     ggaaccgaac ctgaaggatg acggtacgcc tgaagcaatt ccgaaggcga aggaccgtaa       300
     agctcgagga aagattattc ttggcctcga cccttcgttg tacgtccatg tccaggggac       360
     aacaacggcc aaaggcgctt gggacaagct ggagcagacc tacgaagaca acggattgac       420
     gcgtcgctgg ggtctcctgc acaagctgat gacaatgaac ttgaccaact ccgtatccat       480
     ggaggcgtac gtgacgagaa tggttgctac cgcaaaccaa ctcggtggtg tcggattccc       540
     gatttcggaa gaatgggttg gaatgctgct gcttgctggc ctacctcaaa gctacaagcc       600
     gatggtgatg gcgctacaaa actctggatc gaagattacg ggcgacctga tcaagacaaa       660
     gttgctgcag gaggatcacg agccgatgga gaccatcgaa ccagcgtttg cggtcaaggg       720
     caagccgagc tacaagcagg agaacattgg taagccgcag tccaagggtc caaagtgcca       780
     ttcctgtcac aagtttggac acatcgcgcg ggattgtccc gccaagtcgt cgtcgaaacc       840
     gccggagaga aaaggtggta gcaagccagg tcgtgcattt ggtgccgtgc tgacgacgat       900
     ggacgagatg aagagtgagg actggttctt cgattccgga gccacttgcc atctcacccg       960
     gacgaagtcg ttgctgcgtg acgctcatca agcagatggg aagatgttcg ccgcaaacaa      1020
     aggcgaaatg caggtcgtcg cggagggcac tgccgtgcta catccgacct gtggagaaga      1080
     gatcgacgtc aacggagtgc agctgattcc ggaactggta gtcaatctac tgtcggtagg      1140
     taaaattgtc gatagtggcc acaccgttgt tttcggccag aagggctgtg aagtgctcga      1200
     tctcgagggc acgtgcatcg cgaccggaag tcgctcgaac ggactattca agctggaaca      1260
     ggacgtaccc aaggtgctgg tgtgtcagcc gacaaccgtt gagctgtggc acaagcgtac      1320
     cggtcatttg tcaatcaaga acttgaccag attgcgcaac ggcatggtga ctggagtcca      1380
     attcctggag gctgatagtg ctgctggctg caaaatctgt cccatggggc gacagaccag      1440
     gctgcctttc aacaagagtg gaaccagagc gaccgaggtg cttgagttgg tgcattccga      1500
     tatctgcgga ccaatggagc aggtatccat cggtggaagt cgatattaca tcactttcat      1560
     cgacgatcgg acgaggaaga tgttcatcta cttcctgcgt cacaaatccg aagaagaggt      1620
     gactcgctgc ttcaaggact ttcacagcat gtcagagagg cagacaggac acaagctgaa      1680
     ggttttgcgt acggacaacg ggacggagta caaaaacaag ggtttcgaga agctcctgag      1740
     tcagctgggg attcgccacc agaccaccgt tgagtacaca cccgagcaaa acggtctagc      1800
     ggagagggcc aaccggacga tcgtcgagaa ggcacgttgc ttgctattcg aggccaactt      1860
     gccgaagacg ttttgggcgg aagcagctgc tgttgccgtg tatttgatca accgatctcc      1920
     gtgcacgggg attcagacga caccagaaga agcctggact ggtcgtaaac cggatctgtc      1980
     caatttgcga gtgtttggga cgacaacgat ggcccatgtc ccgaaacaga agcggcgcaa      2040
     atgggatccg aaggcggttg aatgtatcct gatcgggtac gacgaggaga cgaagggcta      2100
     tcgtctctac aacgtgaaat cgaagcagat cttcatgagc cgggacgtga ctttcctcga      2160
     tgaaggattg gcggattgcg acggaaggac aactctcaaa gctaccaacg ggccacagtc      2220
     gacgtacgtg aggttggatt ttgaagaact tgttcaagaa ccagaacctg ttcgagagcc      2280
     ggaacctgct caagaaccgg aacctgctca agaacccgag caagtggaag aagaggaggc      2340
     atccgataca agttcggacg agttcgagga tgctgatgac tccgtgacac ttcctgcgct      2400
     cccgccgcga caatcttcac atccgcccca gtcacaggcg ttgaggcgca gcggtaggga      2460
     gcgcgcaatc cctggcaagt ataaagattt caatgtccag tgcagtggta agcgctcttc      2520
     gcgtgtttca gatgccccga tgatggacgg atcgtccact tcagctgccc gactagagaa      2580
     tgctgccagc actgcacccc cgtcgtcatc aaatcaaaga ccagttgacg acgttttcca      2640
     acatgggttg atgctcaacg atagggggtg cccaccccac ggcaagtatt cccatgttga      2700
     tgtccacgat ggcgatactg gttccaattg ttcacagcgc aatctcgatg acccgtgtac      2760
     gcaccaagaa gcgttgacac gtgacgattc cgaccgctgg agacgtgcga tgcaggagga      2820
     gtacgatgct ctcatcagca acgggacctg ggagatgact gaactaccag ctgatcggaa      2880
     ggcgattcga tgcaaatggg tctacaagac gaaggtggac gctgacggca aggtggatcg      2940
     atacaaggca aggctggtga tcaaagggta ctctcagcga aagggggtgg attatgaaga      3000
     aacctattcc cccgtggttc gtcatagttc cctgcgatac ctctttgcgc tcgctgccag      3060
     gatgaatctc cagatcgacc agatggatgc catcaccgcg ttcctccaag gtgagctgac      3120
     cgaggaaatc tatatggaac agccgccctg ttttgacgac caagacaaga cgaatgtttg      3180
     ccgactcaag aaggcactct atggcttgaa gcagtccagc cgcgtgtgga acctcaagct      3240
     ggatgctgcg ttgaagaagt ttggtctcac ttgtgccgac tacgacccgt gcgtatacta      3300
     caaggtcgtc ggagagaagg ttctgtttct tgcgctgtac gtggatgact tgctgatctt      3360
     cagcaactgc aagcgctgga ggaaggaggt caaggatcaa ctttgtggtg aatttcggat      3420
     gaagaatatt ggcccagcta agcacgtctt gggcattcgt gtttcaagga ccaaggactc      3480
     cgtttcactg gaccaagagg cgtacgttga gtttgtgttg gctcgtttcc agatgtccaa      3540
     ctgcaagccg gttgccacac cgatgaacgc cgccgaaaat ctgaccaagt cgatggaacc      3600
     aaccgatcct gaagaagcca agcggatggc gaacgtactc tacaaggagg cagtgggctg      3660
     cctgatgtat ctgggacagt gcacccgtcc agatatatgc cacgccgtga acgttctgtg      3720
     ccacttcaac gacaaccccg gagacaagca ctggaacgcc gtcaaacacc tgatgcggta      3780
     cctgcgaggg acatcgaagt tcaagttgac gtatcggaag gacggtaacg cagacatcaa      3840
     ggggtacacg gatgctgatt gggccgcaga ctgcgagggc cggtagtctg taacgggata      3900
     cgttttcatc gcgcaaggtg gagctatttc gtggtgcagc aaacgacaac aaaccgtggc      3960
     gttgtcaacc tgcgaggcgg agtacatggc cttgtctgcc acagtacaag aagctttgtg      4020
     gtggaaacgt ctacgcgccc ggatcgagaa gaatgaggag atcgtcatct actgcgacaa      4080
     ccagagcgcc atagccgttt cgaagaacgg tggtttccac tccagaacga aacacattga      4140
     cattcgtcac cactttatac gggacacact agatcgtggc gatgtcgaga ttacctatat      4200
     caacaccgaa gtgcaggtag ccgatggatt gaccaagcct ttacagaagc agaaactgga      4260
     gttacatcgc gctgctatgg gacttcaaga tcactgattg aggaggagta a               4311
//
ID   Copia-31_CQ-LTR repbase;    DNA;    INV; 135 BP.
XX
AC   AAWU01021680;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-31_CQ_;
KW   Copia-31_CQ-I; Copia-31_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-135
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 372-372 (2011).
XX
DR   GenBank; AAWU01021680; Positions   40054   40188.
XX
SQ   Sequence 135 BP; 37 A; 34 C; 20 G; 44 T; 0 other;
     tgaagatcga agtaatcaat gacaatcggt gatcattaac tttaagtttt ccgttcaata        60
     aaacttcatt ccacatttaa ctttccccac aaccagtcgt gttttccctc gctctctcta       120
     gaggttatgg gccca                                                        135
//
ID   Copia-32_AA-I repbase;    DNA;    INV; 3971 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.01, Created)
DT   18-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-32_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3971
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3971
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 80-80 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..3970
FT                 /product="Copia-32_AA-I_1p"
FT                 /translation="MGTSVKDGAGIPQLNGTNYENWRFRVQLFLEAAEVAE
FT                 TLTEDVPEAEGEPKNKFLKTDRKAKSLLVGFVGDDCLGIVRDKTTAKAMWK
FT                 ALEDTFAKKSVASQTLLRKQLARLRMKEGTPMRSHFASFDELVRQLKSAGA
FT                 NLEENDLVSQLFLTLPDSYDPLVTALENIDEKELTLETVKQRLLGEESKRA
FT                 DRADYSIEEKSAAFVGGAGGGKKQKKFNGKCHRCGKTGHMQRDCRVKKPES
FT                 NANTVVGGKSVTFMVNQTESANEKESAVFIVDSGCSDHLVNDRSFLQEVRK
FT                 LEKPFVVDVAKDGVTLVGEYEGVVRGITKQGVRFEMQHVVCLPDLRSNLLS
FT                 VKKLSNAGIDVLFTRQHGIEKAVMKHDGDVVAVAQLRRNLYELELELETVE
FT                 KSANICTTEVSYLWHRRLGHASQHAMDTLVRHGMVTGLNPKPKRIGFCDTC
FT                 VLGKQCREPFDGSRKRAARPLERVHSDVCGPIDPPAWDGSRYFVSFIDDCT
FT                 HFAVIYPIKKKSEVFECFKEYEAMATTHFEKKISKLTVDQGREYCSNEQRK
FT                 YYKWKGIQLQPTVAYSPQQNGVAERFNRTLVEKVRTMLIDSNTPKRLWSEA
FT                 ALMATYLLNRSPTSALEEHVTPAECWLNVKPDFGKLRIFGCKAFAWVPDQK
FT                 RKKLDSKSREGVMIGYAPNGYRLWDRAAKKVFIARDVKFDEKCFPFHGQDD
FT                 ADKNVPLIINLRYQQEGEQQDGDAVNVLESDSSEDECHGFDDASDNEFEMA
FT                 PTGVSNPGALPSHQRSGDCEESTTRHSERERKLPGKFLDFFTGFRATSAGN
FT                 ISPLTEPPSAYGDIADRDDRAAWMDAVEAELASLKSNEVWKLVKRPASVKP
FT                 LRSKWVFRLKEDKSGNTVMCKARLVVKGFLQKPGMDYQETYAPVAKLTTIR
FT                 TVLAVGVQRRCYFHQMDVKTAFLHGDLREEIFMEVPDGVNAPPGMVCRLQK
FT                 SLYGLKQSPRCWNEKFNAVLLKLGFVRSKHDYCLYTWFSEDGNDAMYLVLY
FT                 VDDLLIVGTNLKQIQGLKSKLSQVFEMTDCGAMKHFLGINIRYDRNAGSMQ
FT                 LSQVANIERILVKFGMADCNPSRTPMEKGLRLEANEGNIVEEPYRELLGSL
FT                 MYVMMSTRPDICYQVGYLGRFQQHPGQQHWIALKRVVRYLQGSKHLTLELK
FT                 SNEHAKPLVGFADADWAADIADRKSVSGYLFQVFGNTVSWSSKKQTTVATS
FT                 SSEAEYVALSAAAAEAIWLAGLLGDLGMKTVKPVPIFEDNRGCIGMAKNLE
FT                 SKRAKHIDIKHHFVRDHIATGDLTVEPIPTLDQLADIFTKALDAGRFEALR
FT                 KKLGVDDREG"
XX
SQ   Sequence 3971 BP; 1048 A; 871 C; 1159 G; 893 T; 0 other;
     ggttatgggc acttcagtga aggatggtgc tggaattccc cagctgaacg gaacgaatta        60
     tgaaaattgg cggttccgag tgcaactttt cctggaagct gcggaagttg cggagacgct       120
     tacggaggac gtgcccgaag cagaaggtga gccgaagaac aaattcttga agacggaccg       180
     gaaagcaaaa tccttgttgg tcggattcgt tggcgacgat tgcctgggaa tcgtccggga       240
     caaaacgacc gcgaaagcca tgtggaaagc gctggaggac acgtttgcaa agaagtctgt       300
     agccagccag actctcttgc gcaaacagct ggccaggcta cgcatgaagg aggggacgcc       360
     gatgaggagc cattttgcgt cgttcgacga gctggtgcgc cagctgaaat ctgcaggagc       420
     aaatttggag gaaaacgatc tggtatccca attattccta acgcttccag acagctacga       480
     cccgctggtg actgctctgg aaaacatcga cgaaaaagag ctcaccttgg aaaccgtcaa       540
     acaacggttg ctaggagagg agtcgaagcg cgccgatcga gcggactact cgattgaaga       600
     aaaatctgct gcgttcgttg gtggagccgg cggcggtaag aagcagaaga agttcaatgg       660
     aaaatgccat cgttgtggaa aaactggcca catgcagaga gactgccggg tcaagaagcc       720
     tgagagcaac gctaatactg ttgtgggagg taaatccgtt accttcatgg tgaaccaaac       780
     cgagtcagcg aatgagaaag agagtgccgt tttcatcgtt gattccgggt gtagcgacca       840
     cctggtgaat gaccgaagtt tcttgcaaga ggtgcgcaag ctcgagaagc catttgtcgt       900
     cgatgttgcc aaggatggcg tgacacttgt cggtgagtac gaaggtgttg tgcgaggtat       960
     caccaagcaa ggtgtgaggt tcgaaatgca gcacgtggtg tgcttaccag atttgagaag      1020
     taatctgctt tcggtgaaaa agctgtccaa tgcaggtata gatgtgctct tcacacgaca      1080
     gcatggaatc gaaaaggccg tgatgaagca cgacggtgat gttgtcgccg ttgcccagtt      1140
     acggcgaaat ctatatgagc tcgagttaga gttggaaacg gtggaaaaat cagcgaacat      1200
     atgcacgacg gaggtgagtt atttgtggca tcgtcgactc ggccatgcta gccagcatgc      1260
     catggataca ctggtgcggc atggtatggt gacgggtctg aatccgaagc caaaacgtat      1320
     cggattctgt gacacatgcg ttcttgggaa gcagtgcaga gaaccatttg atgggagtcg      1380
     aaaacgtgcg gcacgaccgt tggagagggt tcactctgat gtctgtggcc cgattgatcc      1440
     cccagcctgg gacgggtcca ggtactttgt gtcgtttatc gacgactgca ctcacttcgc      1500
     cgttatctat ccgataaaga agaagtcgga ggtgttcgag tgcttcaagg agtacgaagc      1560
     aatggcgacg acccacttcg agaagaagat cagcaagtta accgtggatc aaggcaggga      1620
     gtactgttcc aacgagcaac gtaagtacta caagtggaaa gggatccagc tgcagccgac      1680
     tgttgcatac tcaccgcagc agaacggcgt agcagaacgc ttcaacagaa cgttggttga      1740
     aaaggtgagg acgatgctca tcgattccaa cacgccaaag agattgtggt cggaagcagc      1800
     gctgatggct acatacttgc tcaatcggag tccaacgagc gcattggaag aacatgtgac      1860
     tcctgcggaa tgctggttga atgtgaagcc agattttgga aagctccgta tattcggatg      1920
     caaagcgttt gcatgggtgc cggatcagaa acgtaagaaa ttggacagca aaagtcgcga      1980
     aggtgtgatg atcggatatg ccccgaacgg gtaccgtctg tgggatcgtg cagcgaaaaa      2040
     ggtcttcatt gcgagagatg tgaaattcga cgagaagtgt ttcccgtttc atggacaaga      2100
     tgacgccgat aaaaatgttc cattgatcat taacctacgt taccagcaag agggggaaca      2160
     gcaggatggt gatgctgtga acgtgctgga atccgattct agcgaagatg aatgccatgg      2220
     tttcgacgac gcaagcgaca acgagtttga aatggcacca accggtgttt caaatcctgg      2280
     cgcgctccct tcgcaccaaa gaagtggaga ctgtgaggag tcaaccacga ggcatagcga      2340
     acgggagcgc aagctcccag gtaagtttct ggatttcttt actggcttta gagcaacatc      2400
     tgctggtaat atttcccctt tgacagaacc accgtctgcg tatggcgaca ttgctgatcg      2460
     tgacgatcgt gcagcctgga tggatgctgt cgaagctgaa ctggcgtcgt tgaagtccaa      2520
     cgaggtgtgg aagttggtga agcgtccggc gtcggtgaaa ccactgaggt ccaagtgggt      2580
     tttccgtttg aaggaggaca agagtggaaa cacagttatg tgcaaggctc ggcttgtcgt      2640
     caaggggttt ctacaaaagc ctggtatgga ctaccaggag acgtacgctc ctgtggccaa      2700
     gctcaccact atccgtacgg tcctcgctgt cggcgtccaa cggcgctgtt acttccacca      2760
     gatggatgta aaaacggcat ttcttcatgg cgatttgcgc gaggaaattt ttatggaggt      2820
     tcctgacggc gtcaatgctc cccctggaat ggtttgccga ttgcagaagt cgttgtatgg      2880
     gctaaagcag tcaccccgct gctggaacga aaagttcaat gcagtgctct tgaagcttgg      2940
     attcgtgcgc tcgaagcacg attactgcct gtacacttgg ttcagcgaag acgggaacga      3000
     tgcgatgtat cttgtgctgt atgtcgatga tttgctgata gttggcacca atctgaagca      3060
     aattcagggc ttgaaatcga agctgtcaca agtcttcgag atgaccgatt gtggcgcgat      3120
     gaaacatttt cttggaatca atattcgtta cgatcggaat gctggttcta tgcagctgtc      3180
     gcaagtggcc aacatcgagc ggatcttggt gaagttcggc atggcagact gcaatccgtc      3240
     gagaacacct atggagaaag gattgagact tgaagcgaat gaaggaaata ttgttgaaga      3300
     gccttaccgt gaacttttgg gaagcctcat gtatgtcatg atgtccaccc gtccagatat      3360
     ttgctaccag gttggctatc tgggtcgttt tcagcagcat cccggccagc aacactggat      3420
     tgcactgaag cgagttgtgc ggtacctgca aggctcgaag catttgacgc tggaactgaa      3480
     gtccaacgaa catgctaagc cgcttgtagg ctttgctgat gcagattggg ccgcggacat      3540
     tgccgatcga aaatcagtta gtggatattt attccaggtg ttcggcaata ccgtctcgtg      3600
     gtccagtaag aaacagacca ctgtggccac atcatcgagc gaagcagaat atgtagcgtt      3660
     gagcgctgcg gcagctgaag ctatttggct ggcaggactc ttgggcgacc ttggaatgaa      3720
     gaccgtaaaa cccgttccga ttttcgagga caacagagga tgcattggga tggccaaaaa      3780
     tctcgaaagc aaacgggcca agcacatcga cataaaacac cactttgtgc gagaccatat      3840
     tgctacaggc gaccttacag tggaacctat tccaactttg gatcagctag cagatatttt      3900
     caccaaagcc ttggacgctg gtcgattcga agccctgagg aagaaactag gagtagacga      3960
     tcgagagggg g                                                           3971
//
ID   Copia-32_AA-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-32_AA_;
KW   Copia-32_AA-I; Copia-32_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-194
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 194 BP; 56 A; 44 C; 35 G; 59 T; 0 other;
     tgaaaacgaa gtaggcggcg actttttaaa tcgatcgcct ctccacctcg tcgagtgaaa        60
     aaaaaattta attgaattca gtctgtacca accacgtgac gcgaacggtc acttttaaat       120
     tcgtttaaat aaattattcc caagtcagtt gtactccgtg cctttttcgt gttccggata       180
     accgagatcc ttta                                                         194
//
ID   Copia-33_AA-I repbase;    DNA;    INV; 4007 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-33_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4007
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4007
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 81-81 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..3997
FT                 /product="Copia-33_AA-I_1p"
FT                 /translation="MGDSRKETVHGIIPFSGTGYENWKFRVERFLKSVELL
FT                 DAVTKDPPAAAEGLEKFQKMDNKASNVIISFIHDDLLDLIREKTTAKEIWT
FT                 ALENVYAKKSVSSQTFVRKQLARLKMTEGESVKDHLKVFDELVRQLKSAGA
FT                 KLEEADMVSQLFVTLPESYDPLVTALENLGAKELTLDIVRERLLAEELKKS
FT                 DRMADTGKEKPAAFAGFKQKQRKFTGKCNRCQRKGHMAKDCRVKLKGEANV
FT                 VAETEGVAFMVGRRNAVDTRCDKVTFKLDSGASHHLVNDKKVFKTLEKLEQ
FT                 PVVIGVAKDDQSMVAWHKGTICGVNRQGVSMTIYEVLFIPDLRANLLSVKR
FT                 MTRTGVTVNFGPKVGEIKLNNSVIAICPLRGDFYELDVFYSNSGTANLCAD
FT                 QNVNLWHRRLGHIGFKNLEALVKFDMAKGISKLSGSLDFCNACVFGKQCRE
FT                 PFNGTRPHTTRPLERIHSDVCGPITPAAWDGSRYFVSFVDDFTHFAAIYLI
FT                 KKKSEVFDKFRCYEAMATALMGHAISKLTVDQGREYCSNEQRRYYEEKGIQ
FT                 IEPTTAYTPQQNGVAERFNRTVIEKVRTMLVEASAPKFMWGEAVLAAVYLV
FT                 NRSPTRAISDRNTPAELWMKHKPDLSKLRVFGCKAFAWIPSQQRKKMDPKS
FT                 RAAVMVGYAPNGYRLWDMEVRQIFTSRDVKFDESSFPFAEKKQPDSPLIVV
FT                 PYDLEVEVQDEVQXETLNEPRPEQEGDVRHVVGSGAALLTDDESEDDTEAY
FT                 SPTPVALPSQQEHGSNLDMETTRHSERERRLPGKFKDFLTGRIFSAVQFPS
FT                 TDAIDIRDGVTTIPTSSLDVPETYQDIFGRPDETFWLQAVKDELDSLKQNE
FT                 VWRLEACPREIKPIKTKWVFRIKEDENGNPVRYKARLVAKGFQQKPGLDYG
FT                 ETYAPVARMATIRTVLAVAVQQKMHIQQLDVKTAFLYGELDETVYLAVPDG
FT                 VEAASNLVCKLQKSLYGLKQSPRCWNNKLNETLLENGFSRSKHDYCLYIKT
FT                 NRQGNVYIIIYVDDVLIFGRQMNAILEAKTILSRKFQMTDCGDVSCFLGMK
FT                 IQYDRAQGRLCLSHEAGINRILTKFGLQDCNYVKTPMEKGCQLPIEDRDST
FT                 NQPYRELLGSIMYTMLCVRPDISYSVGYLGRYQQNPGNSHWQALKRTARYL
FT                 KGTKDLKLEYTCKRGSPILVGFADADWASDAVDRKSVSGFVFQVFGNTVSW
FT                 ASRKQQTVALSSSEAEYGALSLAVSEGIWLRGILEDLKVLPLDESFTIFED
FT                 NHGCISMAKNVECKRAKHIDVKHHFLRDHVIKGTVKIEPIPSNNQLADLFT
FT                 KALDTXHFQEFRKLLGLTD"
XX
SQ   Sequence 4007 BP; 1188 A; 824 C; 998 G; 995 T; 2 other;
     ggttatgggc gactcacgaa aggaaacggt tcacggaatt attccgttct ccggaaccgg        60
     gtacgaaaat tggaaattcc gagtggagag attcctgaag tccgttgagc ttttggatgc       120
     ggttaccaag gacccaccag ctgctgcgga aggcctggaa aagtttcaga aaatggacaa       180
     caaggcatcg aacgtaatta tttccttcat ccatgatgac cttctggatc tgattcgcga       240
     gaagactacg gcaaaggaaa tctggaccgc tttggagaat gtatacgcga agaagtcggt       300
     atcttcacaa acgtttgtcc ggaagcagct cgcaagactc aagatgacag aaggagaatc       360
     ggtgaaggat catttgaagg tgttcgatga attggtgaga caattgaagt cggccggcgc       420
     gaagctagaa gaagctgata tggtttccca actgtttgtg acattgcccg aatcctacga       480
     tccactcgtt acggcgttgg agaaccttgg tgcgaaagag ctaaccctgg acattgtgcg       540
     tgagcgattg ctggctgaag agctgaagaa gtccgacaga atggcagata cgggtaagga       600
     gaaacctgcg gcctttgctg gattcaagca gaagcaacgt aaattcacag ggaagtgcaa       660
     tagatgccaa aggaagggcc acatggcaaa ggattgccgt gtcaagttga aaggtgaagc       720
     caacgtagtc gctgaaaccg aaggtgttgc tttcatggta ggtcgcagga atgctgtgga       780
     taccaggtgt gacaaagtga cgttcaagct ggattccggg gctagccacc atctcgttaa       840
     cgataagaag gtattcaaga cactggagaa gctcgaacaa cctgtcgtaa ttggtgtggc       900
     aaaagatgac cagtccatgg ttgcgtggca caaaggtacg atttgcggag tcaatcgtca       960
     aggcgtgagt atgaccattt atgaggtgct gtttatcccg gacttgcgag caaacttgct      1020
     atcggtgaag cgtatgacca gaactggagt gacggtaaac tttggaccaa aagttggaga      1080
     aatcaagctc aataattcgg tgattgcgat ttgtccgttg agaggcgatt tctacgagct      1140
     ggatgtgttc tattccaata gcggtacggc caacttgtgt gctgatcaaa acgtcaatct      1200
     ctggcatcgt cgattgggcc acatcggttt caaaaatctg gaagcactgg tcaagttcga      1260
     tatggctaaa ggtatttcaa aattgagtgg tagcttagat ttttgcaatg cctgtgtttt      1320
     cgggaagcag tgccgtgaac cattcaacgg cacccgacca cacaccactc gtccgttgga      1380
     gaggatacac tctgatgttt gcggtccgat cactcctgct gcctgggatg gttcacggta      1440
     cttcgtctcg tttgtagatg atttcacgca ttttgcagca atttacttaa tcaagaagaa      1500
     atctgaggtt tttgacaaat ttcgctgcta tgaggcaatg gcaacagcat tgatgggcca      1560
     cgctatatcc aagctaacag ttgaccaagg ccgtgaatac tgttcaaatg agcaaaggcg      1620
     atattacgaa gaaaagggaa ttcaaataga acctacaact gcctacactc ctcaacagaa      1680
     cggggtggct gagagattta atcgtacggt catcgagaag gttcgaacga tgctggtcga      1740
     ggcgagcgct ccgaagttca tgtggggcga agcggtactt gctgcagtct atttggttaa      1800
     tagaagtcca acacgtgcca tatctgaccg aaatactcct gctgaactgt ggatgaagca      1860
     caaaccagat ttgtccaaac ttcgggtgtt cggatgcaag gcttttgctt ggataccgtc      1920
     gcaacagaga aagaagatgg atccgaagag tagagctgca gtcatggttg gctatgcacc      1980
     gaacggatac cgtctatggg acatggaagt cagacaaatt ttcacatctc gagacgttaa      2040
     atttgatgaa tcgtcatttc cgtttgctga gaaaaagcaa ccggattctc cgttgatagt      2100
     tgtgccgtat gatctagaag ttgaagtcca agatgaagtc caamacgaaa cactgaatga      2160
     accacgaccc gagcaagagg gggatgtacg ccacgttgtc ggatctggtg cagctctctt      2220
     gactgatgac gaatccgaag atgacactga agcatattct ccaacaccgg tggcgctccc      2280
     ttcgcaacaa gaacatggtt caaaccttga catggaaacc acgaggcata gcgaacggga      2340
     gcgcaggctc cccggtaagt ttaaagattt tcttactgga agaatattct ctgctgtcca      2400
     atttccgtct acagatgcta tcgatattcg tgatggtgtg acaacaattc ctacgagttc      2460
     cttggatgtt cctgaaacat atcaagatat atttgggcgc cctgatgaaa cattctggct      2520
     tcaagctgtg aaggatgaat tagattccct taagcaaaat gaggtttggc gtctagaagc      2580
     ttgtcccagg gaaattaaac ctataaaaac taaatgggtg tttcgtatca aggaagatga      2640
     aaacggaaac cctgtccgct ataaggctcg acttgttgcc aagggatttc aacagaagcc      2700
     cggactggat tatggtgaaa cctatgcacc agtagcaaga atggcaacca ttcggaccgt      2760
     cctggctgta gcagttcaac aaaagatgca tatccagcaa ctcgacgtta agacagcgtt      2820
     tttatatggc gaactggacg aaacagttta tctggcagta ccggatggcg tagaagcagc      2880
     ttccaaccta gtatgcaaat tacaaaaatc gttatatgga ttgaaacaaa gtccccgttg      2940
     ttggaacaac aagctcaatg aaacacttct tgaaaatgga ttttcacgtt cgaaacacga      3000
     ctattgcctt tatatcaaaa ccaacagaca aggtaatgtc tacattatta tatacgttga      3060
     cgatgtcctt atttttggaa ggcaaatgaa cgcaatactg gaagcgaaaa cgatattatc      3120
     aagaaaattc caaatgacgg attgcggaga tgtcagctgc ttcttaggta tgaagattca      3180
     gtacgacaga gctcaaggaa gattgtgtct ttcacacgaa gctggaatca atcgcatttt      3240
     aaccaagttc ggtttgcaag actgcaatta cgttaaaaca ccgatggaaa agggatgcca      3300
     actaccaatc gaagatcgag attcaacaaa ccagccgtac agagagcttc taggcagcat      3360
     catgtacaca atgttatgtg ttcgtcccga tattagttac tccgttggat accttggaag      3420
     atatcagcaa aaccctggta actctcattg gcaagctttg aagaggacag ctcgctactt      3480
     gaaaggaaca aaggatctga aacttgaata cacctgtaaa agaggttccc cgattctggt      3540
     aggattcgcc gatgctgact gggcctcaga tgcagttgac agaaaatcag taagtggttt      3600
     cgtttttcaa gttttcggaa ataccgtttc atgggctagt agaaaacagc aaacagttgc      3660
     tctatcatcc agcgaagcag aatatggtgc attaagttta gctgtttctg aaggtatttg      3720
     gctcagagga attcttgaag atctgaaagt tttaccgctt gatgaatcat tcaccatctt      3780
     tgaggacaac catggatgta tctcaatggc caaaaacgta gagtgtaaga gagcaaaaca      3840
     cattgatgtt aagcatcatt tcctgcgaga tcacgttatc aaaggtacag tgaagattga      3900
     acccatccct tcaaacaatc agttagcaga tctattcaca aaggcgctcg ataccamtca      3960
     ctttcaagaa ttccgtaaac tccttggatt gaccgattaa gaggggg                    4007
//
ID   Copia-33_AA-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-33_AA_;
KW   Copia-33_AA-I; Copia-33_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-176
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 958-958 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 176 BP; 56 A; 39 C; 21 G; 60 T; 0 other;
     tattggtgta atcgttatca aagccaccat tggttttaat gatggaccat agcaacctgt        60
     ttattacacc taacatgaaa atttgtaatc attcctaatc tgactctcct caagatcact       120
     acaataaacg ttaccgttcc ttaatttcaa accactgcgt tttctatatt acaaga           176
//
ID   Copia-34_AA-I repbase;    DNA;    INV; 3977 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-34_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3977
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3977
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 82-82 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..3975
FT                 /product="Copia-34_AA-I_1p"
FT                 /translation="MDGSKFAVEKLRSGGYESWRFKVEMLLIRENLWKHVT
FT                 EAAPNPLTDAWKDGDXRARATIALLVDDSQHPLIRNCKTASETWKALEGHH
FT                 QKTTMCTRVSVLKKLCKAEYQDDGDMEGHLFRMDELFASLANAGQELESSL
FT                 QVAMVLKSMPESFDTLTTALESRSDVELTMELVKRKLLDEAQKRTEKSHHG
FT                 EAMLRAGGEKRSVICHRCSKPGHLKRECPLAKSEREVSNQPSGGRKPKPAA
FT                 RGKSAKIGKLSSYAFMAGCDRRKPSKAWVVDSGATSHMCADRTFFEEMRSC
FT                 PGTSITLADGNQTHVKGIGSGKLLCCDNQGEEHEVTLSDVYYVPELESNLI
FT                 SVSRLLAKGADVHFSQAQGCVIKCGGVVAAVARKVGGLFYLKVVKEQGMQV
FT                 AAANHPKDCVHVWHRRLGHRDPEAIQRVVREDLATGVAMRKCNIQRPCECC
FT                 AEGKLPRQPFPKKAARQSSKVLDIVHTDICGPMNTTSPGGSRYFLTMIDDY
FT                 SRYTMVYFLKRKSEAVEKIEEYVNMVRNRFGRNPVIIRSDQGGEYKAKRLG
FT                 KFYRANGIVPQYTTSYTPQQNGVAERKNRAIVEMARCMLLDAKMGYRFWAE
FT                 AVNTAVHLQNMLPSRSVEKTPHELWFGKKPDYGNLKRFGCAAFVHIPKVKR
FT                 TKLEPKAIKLTFVGYSDHHKAFRFIDQATNEVVISRDARFVEEEEAVRQRG
FT                 QPSPTTVEYESVIPQDTLDANEEVEDDSDDEGTFEEEATPADSDSSLYDST
FT                 CEVEEDEVSEDEVVMPRRSSRSTKGMAPLRYRETTGMVRKAIPEPRTYKQA
FT                 IEGPEAEQWIAAMDDEIKSHAENRTWTLTTLPANRKVVGXKWIFKRKLDED
FT                 GNIVRYKARLVAQGFSQKYGTDFDEVFAPVVRQVTFRTLLTVAGQRGMLVK
FT                 HADVKTAYLHGELEEAVYMKQPTGYEAQDRDAVCLIKKGLYGLRQAGCIWN
FT                 KKIDGVLKQMGFRQSAHDPCLYVRSGSQGNTYLVIYVDDIVIACHSEEEYE
FT                 DLLRDLNKHFTVSSLGNIRHFLGIXVQRDGKAFTLNQKAYIQKVLQRFGMD
FT                 EAKPSKYPLDPGHLKQKEEKKMLPNNDQYASLVGSLLYVAVNTRPDIAAPV
FT                 AILGRSVSAPSQADWTEAKRVLRYLKSTMDHKLTLKAEDSGLEVYVXADWA
FT                 SDAASRKSNSGYVFLFGGGSIYWGSRKQTCVALSSTEAEFVALAECCQELT
FT                 WIVRMLQDFSVDVPTPVLVHEDNQSCIKQLEXTKVNNRSKHVDTKYHFVRK
FT                 LHEDNLIDVRYCPTDQMVADMLTKPLAPQKLARFRDAVGVHQSRR"
XX
SQ   Sequence 3977 BP; 1057 A; 987 C; 1196 G; 729 T; 8 other;
     ggttatgggc agccgttttt tcccactgaa gaattgaagc ttttttcaaa agaagaaatg        60
     gacggaagca agtttgcggt tgagaagcta cggagcggag gctacgagag ttggagattc       120
     aaggtcgaga tgctgctcat ccgggagaac ctttggaagc atgtcacgga ggccgcccca       180
     aaccccctga cggatgcctg gaaggacgga gatkcaagag ctcgagccac gattgcccta       240
     cttgtcgacg acagccaaca tcctctcatc cgaaactgca agacggccag cgaaacgtgg       300
     aaagctctgg agggccatca ccagaagacc acgatgtgca ccagggtctc ggtgctgaag       360
     aagctgtgca aggcggagta tcaagacgac ggagatatgg aaggccacct cttccggatg       420
     gacgagctct tcgctagcct ggccaacgct gggcaggagc tggaatcaag ccttcaagtc       480
     gcgatggtgc tgaagagcat gccggagagt ttcgacacgc tcacgacggc gctggagagc       540
     aggtccgatg tagaactgac gatggaactg gtgaagcgga agctgctcga cgaagctcag       600
     aagcgaacgg agaagtccca ccacggagaa gcgatgctgc gagcgggcgg ggagaagcga       660
     agcgtgattt gccaccggtg cagcaagccg ggccacctga agcgtgaatg tcccctagcg       720
     aagtccgagc gtgaagtcag caatcaaccg agcggcggaa gaaaaccgaa gccagctgca       780
     agaggtaaaa gtgcgaaaat tggcaagctg tcatcgtatg cgttcatggc aggctgcgat       840
     cgacgaaaac catccaaggc gtgggtggtg gattcgggcg cgacatccca catgtgcgca       900
     gaccgaacgt tttttgaaga gatgcggagc tgtccgggga catccatcac cctggcggac       960
     ggcaaccaga cgcacgtgaa gggaatcggt tccggaaagc tgctatgctg tgacaaccaa      1020
     ggcgaagaac acgaggttac cctgtcggat gtttactacg tccccgaact ggagtccaac      1080
     ttgatttcgg ttagcagatt actggcgaag ggtgcagacg tgcatttttc gcaggcccaa      1140
     ggatgcgtca tcaagtgcgg aggagtggta gccgctgtag cgcgcaaggt cggcggtttg      1200
     ttctacctga aggtcgtcaa ggagcaaggt atgcaagtgg cagctgcgaa ccatccgaag      1260
     gattgtgtcc acgtgtggca ccgaaggctt ggccatcgag atcctgaagc gatccagcga      1320
     gtggtgcgag aggatttggc tacaggagtg gccatgcgca agtgcaacat ccagcgtccg      1380
     tgcgagtgct gtgcggaggg gaagttacca aggcaaccat ttcccaagaa ggccgcacga      1440
     caatcatcaa aggttctgga catcgttcac acggacatct gcggtccaat gaacacgacg      1500
     tcgccaggtg gatcaagata cttcctcacg atgatcgacg actacagtcg gtacaccatg      1560
     gtatattttc taaagcgcaa gtcagaggcc gtggagaaaa ttgaggagta tgtcaacatg      1620
     gtcaggaatc gtttcggaag gaatcccgtg attattcgct ccgaccaggg aggcgagtat      1680
     aaggcgaagc ggctgggcaa gttctacagg gcgaacggaa tcgtcccgca atacacgaca      1740
     agctacacac cgcagcagaa tggagttgcg gagcgcaaga accgggckat cgtggagatg      1800
     gcgcgctgca tgctgctcga tgcgaagatg ggctaccgtt tctgggcaga agcggtcaac      1860
     acggcggtgc atttgcagaa catgctgccg tctcggtcgg tagagaagac tccacacgaa      1920
     ctctggttcg gcaagaaacc agactacgga aatctcaaga ggttcggatg tgcagcgttc      1980
     gtccacattc ccaaagtcaa gcggacgaag ctggaaccga aagcaatcaa gctaacgttt      2040
     gtcggttact cggatcacca caaagccttc cggttcatcg atcaagctac gaacgaagtc      2100
     gtgatcagcc gtgatgcaag attcgtcgaa gaagaagaag cagtcagaca gcgaggtcaa      2160
     ccatctccga caaccgtgga gtacgagtcg gtaataccgc aagacacact cgatgcaaat      2220
     gaagaagttg aagatgacag cgatgacgaa ggtacttttg aggaggaggc tacgccggcg      2280
     gattccgatt ccagcctgta tgattcgacc tgtgaagtag aagaagatga agtaagtgaa      2340
     gatgaagttg taatgcctcg gaggtcaagc cgcagcacga aggggatggc gcccctgcgg      2400
     taccgggaaa cgactggtat ggtgcgaaaa gcgatcccgg agccgaggac ctacaagcaa      2460
     gcaatcgagg gtcctgaagc ggaacagtgg attgcagcaa tggacgacga gatcaagtca      2520
     cacgccgaga accgcacctg gacgctgacc actttgcccg ccaatcgcaa agtcgtcggg      2580
     tmgaaatgga ttttcaagcg aaaactggac gaggacggaa acatcgtgcg ctacaaagcc      2640
     cgattagtag cccaaggatt ttctcagaag tacgggacgg acttcgatga agtattcgcg      2700
     cccgtagtcc gccaagtcac cttcaggacg ttgctgacag ttgccggcca gcggggcatg      2760
     ctggtgaaac acgccgacgt caaaactgcc tatcttcatg gagaactaga ggaggcagtt      2820
     tacatgaagc aaccgaccgg atatgaagcg caagacaggg atgcagtttg cttgatcaag      2880
     aaaggcctgt acggactcag gcaagccgga tgcatctgga acaagaagat cgacggtgtg      2940
     ttgaagcaga tgggtttccg gcagtccgcc cacgacccgt gtctctacgt tcggagcggt      3000
     agtcaaggca acacgtacct cgtgatctac gtggacgaca tcgttatcgc gtgccacagc      3060
     gaggaggagt acgaggactt gttgcgggac ctgaacaagc acttcaccgt ttcttcgttg      3120
     ggcaacatcc ggcattttct cggaatcsaa gtgcaacgtg atggtaaggc tttcacactc      3180
     aaccagaagg cctacatcca aaaggtgctg cagaggttcg gaatggatga agcgaagcca      3240
     tcgaagtatc ccctggatcc tggccaccta aaacagaagg aggagaagaa gatgttaccg      3300
     aacaacgacc aatacgcaag tttggtagga agcctgttgt acgtggcggt aaacactcga      3360
     ccggacatcg ctgcacccgt agccattctg ggacgttcag taagtgcacc atctcaagcc      3420
     gattggacgg aggccaagcg tgtcctacgc tatctgaagt cgacgatgga ccacaagctc      3480
     acgctgaagg ccgaggattc cggtttggag gtctatgtgg amgcagactg ggcaagcgat      3540
     gcagccagtc gcaaatcaaa ctccggatac gtgttcctgt tcggcggcgg atcaatatac      3600
     tggggttcgc gcaagcagac gtgcgtggcg ctcagcagta ccgaagccga attcgtggcg      3660
     ctcgcsgagt gctgtcagga gctcacgtgg atcgtccgga tgctccaaga tttctccgtt      3720
     gatgtcccaa ccccggtgct ggtacacgaa gataaccagt cctgtatcaa acagttggag      3780
     tswacgaagg tcaacaaccg ttcgaagcat gtggacacaa aataccactt tgtccgcaag      3840
     ctgcacgaag acaatctcat cgacgtccgc tactgcccca ccgatcaaat ggtagcggat      3900
     atgctgacca agccgctggc accacagaag ctggcaagat tccgtgacgc agtaggagtt      3960
     caccaatcga ggaggag                                                     3977
//
ID   Copia-34_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-34_AA_;
KW   Copia-34_AA-I; Copia-34_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 959-959 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 146 BP; 49 A; 25 C; 28 G; 44 T; 0 other;
     tgttgaagag taggcgcttg atgaaccagc aagccatgaa atagttgtaa tttgacgtta        60
     aataaatgta tgagttagat cgttcccaac ctttgaacag aacagttgtt cttaattaat       120
     aatccgatct acggcatatc ccaata                                            146
//
ID   Copia-35_AA-I repbase;    DNA;    INV; 4301 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.01, Created)
DT   18-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-35_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4301
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4301
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 83-83 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           349..4275
FT                 /product="Copia-35_AA-I_1p"
FT                 /translation="MVDARFAVPKLNGQNWQTWKIRLEMLLSREDLWYTVK
FT                 DPVPTEEEDRDEEWCSDDRKAKSTIVLLLEDSQLPLVKNKKYARDVFEALA
FT                 NYHQKTSRSVRVSLLKRLCAINLVENGDLEQHLSEIDELFDRLDAAGTKLD
FT                 ADTKICMLLRSLPPSFDGIVSVLDSRADDEISMDIVKARLMDEFQRRRERD
FT                 GPPTKPEKAMRSQMSRTKDRQGKETRTCHYCKQPGHLRRNCRKYIASQREE
FT                 AAKKDNVKAKSAHNEAKSVAFTVGSDFSSWIIDSGASAHMTSDESFFSSLK
FT                 KCEGGWITLADGERTRIFGQGSGVLYGVDDEENTVKIEMSEVQYVPGLASS
FT                 LISVSQLAQKGLSVAFGKDDCKISNRSGEVVATGSRRSGLYHLRQGATSLA
FT                 ATVGQHSENCRHQWHRRLGHRDWAAVERLVKDDLATGMKVSKCNLQIVCEC
FT                 CAEGKSARAPFPPVEERKSSQVLDIIHTDLCGPMKETTPSGNRYVMHLIDD
FT                 HSRFTVTYLLKSKSEAAGNIKDFVRWVENIFGRKPRVIRSDGGGEFDNAEL
FT                 RCFYKKEGIVPQYTTPYSPQSNGVAERKNRSITEMATCMLLDAGLEKRFWG
FT                 EAVLTATYLQNRLPSRSIQRTPYELWWGRKPDLSHVRVFGSEAFVHVPSVK
FT                 RSKMESKARKLTLVGYSMEHKGYRFVDRATNQITVSRDVRFIELGNGSSSV
FT                 EFPVVPEEEEERVAGEKKILPLKGNGEESVGVKAPKSVRRDRNVPNDNDSD
FT                 RSMYESLSDDEELRDNEVRRPVRKNRGVVPQHLNDFVLDIAAGSAECVQEE
FT                 PNSVEEAKQIKVWRNAMADELESHRRNQTWELVLPPKGRKVIGSKWVFKVK
FT                 KNELGQVVKCKARIVAQGYAQKYGIDFDQVYAPVTQHATFRTFLAVAAKKG
FT                 LAVKHLDVKTAYLNAELEEEVFMRQPPGYAVSGQEEFVCRLKRSIYGLRQS
FT                 ARCWNIKLQDVLGRLGFQQSTADQCLFIKKVRGKTVFLLVYVDDMLVASAD
FT                 EGEIKRVVDALNGEFELTCLGDVSHFLGMEVKREEGAFKLRLLAYIDQLID
FT                 RFGMGQAKLAKSPMDPEYAKTVDXSDELQNPTQYRSLVGGLLYLSVCARPD
FT                 IAASAAILGRKFXKPTERDWTAAKRVLRYLRGTKEYYLHLRAGSGSALTGY
FT                 SDSDWADDVETRRSTSGFVFKYGDGAIVWASRRQTCVTLSSMEAEYVALCE
FT                 ASQDAIWLRHLLRDLDEEQKKPTILREDNQSCITFVKTGRSSRKSKHIDTK
FT                 ERFVEELCNSGQLTLEYCPTDIMAADVLTKPLGPTKLERFRDMLGVAM"
XX
SQ   Sequence 4301 BP; 1138 A; 932 C; 1297 G; 931 T; 3 other;
     ggttatgggc cccagggagt agccccagtg cgatcgcata aggaagattt gaggttaagt        60
     gtttcccctc ccggaggagg aagaaatcgc gagaaggtgc tgcgcccgtg aacgtggcga       120
     gagcgaagtt tgattagtgt gtgtgatagc ggggagaaaa gcagaacgga aaaagttgac       180
     gttcactgcg aagagtgagt gaagaagccg tttcgttttc cgttgtgttc cgggcaaacg       240
     acgctcgaag aaaagtgaga agagaagtac cgagtcatca cagctcacgc agctcgtagt       300
     tgttttgttt acgttcgttc ggtcaccggt tagtgcgcga agtgaacgat ggttgacgcg       360
     agatttgctg tgccaaagtt aaatgggcaa aactggcaga cgtggaaaat acgtctagaa       420
     atgttgctca gccgtgaaga tctttggtat acagtgaaag atccggtccc gacggaagaa       480
     gaagaccgcg atgaagagtg gtgtagtgat gacagaaaag cgaaatcaac gattgttttg       540
     ctgctggaag atagccagct tcctctcgtt aaaaacaaaa agtacgcgcg tgacgttttc       600
     gaagctttgg cgaactatca ccagaaaaca agtcgttcgg ttcgggtgtc gctattgaag       660
     cgattgtgtg cgataaattt agtggaaaac ggcgatcttg aacagcatct cagtgagatt       720
     gacgagctgt ttgatcgtct ggatgccgcc ggcacgaagc tggatgccga cacgaagatt       780
     tgtatgcttt tacgcagtct tcccccgtcg ttcgatggga ttgtttccgt gctcgacagc       840
     agggcagacg acgagatttc gatggacatc gtcaaggcgc gcttgatgga tgagtttcag       900
     cgtcgtcggg agcgagacgg ccctccgacg aaacccgaaa aggcgatgcg gtcccagatg       960
     agtcgcacga aagaccgtca aggaaaggaa acccgaacgt gtcattattg taagcaaccc      1020
     ggccaccttc gtcgcaactg ccggaagtat atcgcttccc aaagagagga ggcagcgaag      1080
     aaggataacg tgaaagcgaa atccgcccac aacgaggcga aaagtgttgc gtttaccgtc      1140
     ggtagtgatt tttcgtcgtg gataatcgac agcggagcca gcgctcacat gacctccgat      1200
     gagtcgttct tttcgtcgct gaagaagtgt gaaggtggat ggattaccct cgccgatgga      1260
     gaacgcaccc ggatcttcgg tcaaggaagt ggtgtgttgt atggggtcga cgacgaggag      1320
     aacacagtga agatagaaat gagtgaagtg caatacgtgc ccggactggc atcaagtttg      1380
     atttccgtga gccagttggc acagaaaggc ttgagtgtgg catttggtaa agatgactgt      1440
     aagatttcca accggagtgg tgaagtagtg gcaaccggta gccgacgtag cggattgtac      1500
     catctgcgtc agggagcgac ttcgttggcc gctactgttg gtcagcattc ggaaaactgt      1560
     cgacaccagt ggcatcgtcg tctaggccac cgcgattggg cggcggtgga gcgcctggtg      1620
     aaagacgatc tggcgaccgg aatgaaggta agcaaatgca atttgcaaat cgtttgtgaa      1680
     tgttgtgctg aagggaaatc ggcccgtgct ccgtttccgc cggttgaaga gcgaaagtct      1740
     agccaagtgc tggacattat ccacaccgat ctgtgtggcc ccatgaagga aacgactcca      1800
     agtggcaatc ggtacgtgat gcatctgatt gatgatcaca gccggtttac tgtgacgtat      1860
     ttgcttaaaa gcaaatcaga agctgcggga aatattaaag attttgtgcg atgggtggag      1920
     aacatattcg gacgaaagcc ccgggtcatc cgctctgacg gcggcggcga attcgataac      1980
     gccgagttgc gatgtttcta taagaaggag gggatcgtgc cgcaatatac cactccgtat      2040
     tcgccgcaat ctaacggagt cgcggagcgg aaaaaccgct caatcaccga gatggcaacg      2100
     tgcatgttgc tagatgccgg tcttgaaaag cgattttggg gagaggccgt gctgacggct      2160
     acctacctcc agaaccgact accgtcgagg tccatccagc gcaccccata cgagctgtgg      2220
     tggggacgaa aaccggacct aagccacgta agagtgttcg ggagtgaagc cttcgtacat      2280
     gtaccgtcgg tgaagcgatc gaaaatggag agtaaagctc gaaagttgac tctggttggg      2340
     tactctatgg agcacaaggg gtaccgattc gtcgatcgtg ccaccaacca gatcacagtg      2400
     agccgagatg tgcgattcat cgagctcggc aatggttcgt cttcggtgga gttcccggtt      2460
     gttcctgagg aggaggagga gcgcgtcgcc ggagagaaga agatcctgcc gttgaaggga      2520
     aacggtgaag aatcagtggg tgtgaaagca ccaaaaagtg tccgaagaga tcgaaatgta      2580
     ccgaatgaca atgacagtga tcgaagtatg tacgagtcgc taagcgacga tgaagaactg      2640
     agagacaatg aagtgcgacg acctgtaagg aagaaccgtg gtgttgtgcc tcagcatttg      2700
     aacgattttg tgctggacat tgcagcagga agtgcggaat gcgtgcaaga agaaccgaac      2760
     agtgtggaag aagcaaaaca gattaaagtg tggcggaatg cgatggccga cgaactcgag      2820
     tcgcatcgcc gaaaccaaac ctgggaactg gtattaccac cgaaaggacg caaagtgatc      2880
     ggttcaaagt gggtttttaa ggtgaagaaa aacgagttgg gacaagttgt gaagtgtaaa      2940
     gcccgcattg tggcgcaagg ttacgcgcag aagtatggaa ttgattttga tcaagtgtac      3000
     gctccggtaa ctcagcacgc aacattccgc acgttcctcg ctgtggccgc gaagaaggga      3060
     cttgccgtta aacaccttga tgttaagacg gcctatttga acgcggaact tgaagaagag      3120
     gtttttatga ggcaaccacc gggttatgca gtatcgggtc aggaggagtt tgtctgcmgg      3180
     ctaaaacgca gcatttacgg gctgcgccag tcagccagat gctggaacat aaagctgcag      3240
     gatgttctcg gccggcttgg tttccaacag tcaaccgcag accagtgtct gttcatcaaa      3300
     aaggtacgtg gtaaaactgt atttctgttg gtatacgttg acgatatgct cgtcgcgtcg      3360
     gctgatgaag gggagatcaa gcgtgtagtt gatgctctca acggagaatt cgagctaact      3420
     tgcttgggag acgtgagtca cttcctaggc atggaggtga agcgcgaaga aggagctttc      3480
     aagctacgtt tgctggcata tattgatcag ctgatcgacc gattcgggat gggacaggcc      3540
     aaactggcga agtcccctat ggaccctgag tatgccaaga ccgtagatam cagcgatgag      3600
     cttcagaacc ctacgcagta cagaagctta gtaggtggac ttctctacct ttccgtatgt      3660
     gcccgaccgg acatcgctgc cagcgcagct atactaggac gcaagtttkc caagcccaca      3720
     gaacgtgact ggacggcagc caaacgtgta ctgcgctacc tccgcggaac gaaggagtac      3780
     tatctacatc tgagagcagg ttccggtagt gcattgactg gctacagtga ctcggactgg      3840
     gcagatgatg tagagacacg ccgatcaacg tcagggtttg tcttcaaata cggagatgga      3900
     gcgatcgttt gggctagcag acgtcagacg tgcgtgacac tcagctccat ggaagccgag      3960
     tatgttgcgc tctgtgaagc aagccaggat gccatctggc tgagacatct tctgcgcgat      4020
     cttgatgagg aacagaagaa gccaacgatc ctgagagagg acaatcagag ttgtataact      4080
     tttgtgaaga cagggcggtc aagtcgaaag tcgaagcaca tcgacacgaa ggagcgcttc      4140
     gtggaggagc tctgcaacag tggacagtta accctggagt actgcccgac cgatattatg      4200
     gctgctgatg tcctcacaaa gccgcttgga ccgactaagc tcgagcgatt ccgtgatatg      4260
     ctcggggttg caatgtaaag tgactgaaca ttgaggagga g                          4301
//
ID   Copia-35_AA-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-35_AA_;
KW   Copia-35_AA-I; Copia-35_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-308
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 308 BP; 70 A; 81 C; 57 G; 99 T; 1 other;
     tgtcggagta caatgattta tccctttcca tttgttagcc tagattatcc gcacacccct        60
     cactcattga accaasagac aatcattatt acaacaaagt ctgccgcgca ttataaacgt       120
     gtttttaccg ctgctaataa aagttaattt cctaatcgta gtttttcctc gcgagttaag       180
     tgattcgatt ccaaatccga tttcctttgt ccgctggtgc ttggctgtgt ccgccgcgta       240
     ttcgctactc tgctcgtcgt cgagttcttc cgggaagacc tgtcgttccg gagtcgaata       300
     ctccaaca                                                                308
//
ID   Copia-35_CQ-I repbase;    DNA;    INV; 4025 BP.
XX
AC   AAWU01005677;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-35_CQ_;
KW   Copia-35_CQ-LTR; Copia-35_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4025
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 373-373 (2011).
XX
DR   GenBank; AAWU01005677; Positions    9090    5066.
XX
CC   Positions [1376-1879] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..4024
FT                 /product="Copia-35_CQ-I_1p"
FT                 /translation="MGTMKDGIPLLTGQNFENWSYRVQLHFEGAELAEVFT
FT                 ADVPAAAAGNQDREKFLKLDRKAKTQLVGFISEECLGIVKGKETTKLMWQA
FT                 LEGHFLKKSVASQTIIRMQLARLRMKEGTGMRSHFQCFDDLVRQLKSVGAK
FT                 LEEGDLIAQLFLSLPESFDPLVTALENLDEKDISLELCKQRLLAEEAKRIN
FT                 RMEESPEVTTAAFVGQKKKFSGKCRRCGKKGHMAKDCRVKLSEGQANAVVK
FT                 ERPVSFMVNQGQPGRDSTKVVFYVDSGCSDHLVNNLACLKAVRKLKHPFIV
FT                 DVAKDGVSLTGSYEGVLEGVTMAGVPVEMKEVVFLPELRGNLMSVKKLSKA
FT                 GVDVLFTGSRGQEKAVMKFNGAVIAVAYLRNNLYELELEVNMSRGTANLCA
FT                 AELGKLWHRRLGHASQQAMDNLVKHEMVTGINTPLGAVGFCDTCVLGKQAR
FT                 EPFSGRREPVTRPLERIHSDVCGPIDPPGWDGSRYFVSFIDDYTHFAMVYT
FT                 IKKKSEVFESFKEYEALVTTQLEKKICKMTVDQGREYCSNQQLDYYKRRGI
FT                 QLQPTVAYSPQQNGVSERFNRTVVEKSRTMMIDAKVPKNLWPEAVQTATYI
FT                 LNRSSTAAIVEKETPVERWTNIKPDLEKLRVFGCQAFAWIPNQQRKKLDPK
FT                 SRETVMIGYAPNGYRLWDQRDRKVVIARDVKFNEAHFPFAEDGDAQSAPPL
FT                 MIQVQHDVPEGDQRVADFDVPVQDAAEVEVPPIGNEADDDTDDAEFCDADG
FT                 GAYPADNDAGGAGQFSSEEDNPGALPSQQRGDGFSESNTRRSDRERKFPGK
FT                 FLDFLTYGAHCAVKNSELADPPLTFDEINTRADGHLWKAAVDDELRSLDAN
FT                 AVWKLVKCPSGIKPLKSKWVLRVKEDESGNPVRYKARLVVKGFLQKAGLDY
FT                 HETYAPVAKLVTIRTALAVGVQRRCYFHQMDVKTAFLHGKLQETIFMAVPD
FT                 GVQAEPGTACQLLKSLYGLKQSPRCWNERFNQVLVQLGFTRSKYDYCLYTR
FT                 FNERGNDAVILVLYVDDLLIIGKRQETIQKLKMDLAQTFEMTDCGEVKFFL
FT                 GMKIDYNWQQGRMKLSQAASIDKVLKNFGMENCNPTKTPMEKGLMLERQVT
FT                 EAAEEPYRELLGSLMYMMMSTRPDICFSVGYLGRFQQQPGQQHWTALKRVV
FT                 RYMKGTKQMNLEINRCEDANCLLGFADADWATDTEDRKSVSGFLFQVYGNT
FT                 VSWSSKKQTTVATSSSEAEYVALSAAASEAIWLRGLLGDLGEAITGPVTIF
FT                 EDNHGCIGMAKNLESKRAKHIDIKHHFIRDHVADGKLNIQPIGTTNQLADI
FT                 FTKALDPGRFGDLRRQLGLRDREG"
XX
SQ   Sequence 4025 BP; 1046 A; 873 C; 1188 G; 918 T; 0 other;
     agaattcctt taggttatgg gcactatgaa ggacggaatc ccgctgctga ccggccagaa        60
     ttttgaaaac tggagctatc gcgtgcagct gcactttgaa ggggcggagt tggcagaagt       120
     tttcacggcc gacgttcctg ctgctgcagc tggaaatcaa gatcgcgaga agtttcttaa       180
     gttggaccgg aaggccaaga cgcagcttgt tggattcata tccgaagaat gcctcgggat       240
     tgtcaagggt aaggagacga cgaagctgat gtggcaagcg ttggaaggcc acttcctgaa       300
     gaagtccgtg gctagccaga ccatcatccg gatgcagctg gccagattgc ggatgaagga       360
     ggggaccggg atgcggagcc acttccagtg tttcgatgac ctcgttcggc agctcaagtc       420
     cgttggagca aagctggagg agggtgatct catagcccag ttgttcctgt cgttgccgga       480
     gagtttcgac cctctggtta ctgctttgga gaacctggac gagaaggaca tctccctgga       540
     attgtgtaag caacggttgc ttgctgagga ggctaagcgg atcaaccgta tggaagagtc       600
     gccggaagtc acgactgcag cgtttgttgg acagaagaaa aagttcagcg gtaagtgtcg       660
     tcggtgcggc aagaagggcc acatggccaa ggactgccgg gtgaagctgt ctgaaggtca       720
     agcgaatgca gttgtcaagg agagaccggt gtctttcatg gtcaaccagg gtcagccagg       780
     aagagactct acgaaggttg tgttctacgt ggattctgga tgcagtgacc atctggtgaa       840
     caacctggcc tgtttgaagg ctgttcggaa gttgaagcac ccgtttattg tggacgtcgc       900
     caaggatggc gtttcgttga ccggttctta cgaaggtgta ctggagggcg tcaccatggc       960
     gggagttcct gtggagatga aagaagtcgt cttcctgccg gagctacgcg ggaacctgat      1020
     gtctgtgaag aagctgtcga aggctggtgt tgacgttctt ttcaccggta gccgtggaca      1080
     ggagaaggca gtcatgaagt ttaacggtgc tgtgattgct gtggcgtatc tacggaacaa      1140
     tctctacgaa ttggaactag aagtgaatat gtcaagaggt acagcgaacc tgtgtgctgc      1200
     cgagttgggt aaactgtggc atcgcagatt gggtcatgca agtcaacaag cgatggacaa      1260
     tctggtgaaa cacgaaatgg tcaccgggat aaatacgccg ctaggagcag tcggattctg      1320
     tgacacttgt gtgttgggta agcaagcccg tgagccgttc agtggtagac gtgaacctgt      1380
     tacgaggcca ctggaacgta tacactcgga tgtgtgtgga ccgattgatc cgccaggatg      1440
     ggatggatct cgttatttcg tgtcgttcat cgatgattac acacattttg cgatggttta      1500
     cactatcaag aagaagtcgg aagttttcga gagtttcaag gagtacgagg ccctcgtgac      1560
     gacccagttg gagaagaaga tatgcaagat gacggtggac caaggtcgcg agtattgttc      1620
     gaaccagcag ttggattatt acaaacgtcg tggcattcaa ctccagccga cagtggcata      1680
     ctccccgcag cagaatggtg tctcggaacg attcaacagg actgttgtgg agaagtctcg      1740
     aacgatgatg attgacgcga aggtaccgaa gaatttgtgg ccagaagcgg tgcaaaccgc      1800
     aacgtatatc ttgaacagaa gttcaacggc tgcgattgtt gagaaggaaa ctcctgtaga      1860
     acgttggacc aacatcaagc cggatctcga gaagctgcgt gtttttggat gtcaagcctt      1920
     tgcgtggatt ccaaatcagc agaggaagaa gctggacccc aagagccgag agacagtgat      1980
     gattgggtac gcgcccaacg ggtaccgttt gtgggaccaa agagatcgta aagttgtcat      2040
     tgcacgagac gtgaagttca acgaagcaca tttcccgttt gctgaggatg gagacgccca      2100
     atctgcaccc ccgttgatga tacaagttca acatgatgtg ccagaggggg atcagcgtgt      2160
     agctgatttt gatgttccag tccaggatgc ggctgaggtt gaagtacctc cgattggaaa      2220
     cgaagctgat gacgacacgg atgatgctga attctgcgac gctgatggag gtgcatatcc      2280
     tgccgacaac gacgcgggcg gtgccggcca gtttagttcc gaagaggata atcctggggc      2340
     gctcccatcg caacaaagag gtgacggctt ttcagagtca aacactaggc gcagcgatag      2400
     ggagcgcaag ttcccaggta agttcctaga ttttctcact tatggagcac actgcgctgt      2460
     taagaattcc gaacttgcag atccaccgct tacatttgac gaaatcaata cccgtgctga      2520
     tggtcatttg tggaaagccg cagtggacga tgaactacga tcccttgatg ccaatgctgt      2580
     ttggaagcta gtgaaatgtc cttctggtat caagcccctg aaatcaaaat gggttctgcg      2640
     agtcaaggag gacgaaagcg gtaatcctgt gcgctacaag gcaagactcg tcgtgaaggg      2700
     attcctgcag aaggctggtc tggactatca cgagacgtat gcaccggtag caaagctggt      2760
     caccattcgg acggcactgg ctgttggcgt gcagcgaaga tgctatttcc atcaaatgga      2820
     tgtgaagacg gcctttttgc acggaaaact gcaggaaact attttcatgg ctgttccgga      2880
     tggcgtgcaa gcagaaccag ggacagcgtg tcaactttta aagtcattgt acggattgaa      2940
     gcaatctcca cggtgctgga acgagcggtt caatcaagtt ttggttcagc ttggatttac      3000
     ccggtctaaa tacgattatt gtctctacac acggtttaac gagaggggga atgacgctgt      3060
     tatccttgtg ctgtatgttg acgacctgct aatcatcggt aaacggcaag agacaattca      3120
     aaagctgaaa atggacttgg cgcaaacctt cgagatgacg gactgcggag aagtcaagtt      3180
     tttcctaggg atgaagatcg actacaactg gcagcaaggt cgaatgaagc tgtcccaagc      3240
     agctagcatc gataaggtcc tgaagaactt tggaatggaa aattgtaacc cgacgaaaac      3300
     tcccatggaa aaaggactga tgcttgagcg acaagttacg gaagctgccg aagaacctta      3360
     ccgtgagctt ctgggtagtc tcatgtacat gatgatgtct accagaccgg atatttgctt      3420
     ttcggttgga tacttgggac gattccaaca acaaccagga cagcagcact ggacggcgct      3480
     gaaacgtgtt gtacgataca tgaaaggtac caagcagatg aacctggaga tcaaccgttg      3540
     tgaggacgcc aactgcttgc tcgggtttgc tgacgcggac tgggcaacag acactgaaga      3600
     ccggaagtca gtcagcggat tcctgttcca agtatacggt aacacggtct cgtggtccag      3660
     taagaaacag acgactgtgg ccacatcttc gagtgaagct gagtacgttg ccttgagtgc      3720
     tgctgcatcg gaagcaatct ggttgcgtgg tcttttggga gatcttggag aagccatcac      3780
     tggaccggta acaatttttg aagataacca cggatgcatc gggatggcga agaatttgga      3840
     gtcaaagcga gcgaagcata ttgacatcaa acatcacttc atccgggacc acgttgctga      3900
     cgggaagctc aacattcaac ctatcgggac aaccaaccag ctagcagaca tcttcacgaa      3960
     ggcgttggac cctggacgtt ttggagacct gcgacgacaa ctaggactgc gcgatcgaga      4020
     ggggg                                                                  4025
//
ID   Copia-35_CQ-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   AAWU01005677;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-35_CQ_;
KW   Copia-35_CQ-I; Copia-35_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-130
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 374-374 (2011).
XX
DR   GenBank; AAWU01005677; Positions    5065    4936.
XX
SQ   Sequence 130 BP; 46 A; 31 C; 28 G; 25 T; 0 other;
     tgtaacgaag caacctttga gaaagctgag gtgcgatcga caggccagct tctagttcat        60
     tcagttgcga acactcaagc gagcaagacg caaaataaag attccttacg aaaaacccta       120
     aaccgagtca                                                              130
//
ID   Copia-36_AA-I repbase;    DNA;    INV; 4050 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 24.08, Created)
DT   11-APR-2019 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-36_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4050
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4050
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1423-1423 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 4050 BP; 1050 A; 892 C; 1200 G; 908 T; 0 other;
     ggttattggc ccaggcactg tcggaatcta gctcggttcg cggaaatatc gcgtcggtcc        60
     gtcggaagtt gccggaaaat gtcggagcaa gtgacgcttg aaaaactggg ggatcataac       120
     tggcccctat gaaagtacaa ggttatgttg gtgctcggcg aaaaaggctt agcggacatc       180
     gtgaaggcgg atattccggg tgttccttcg aaggattggc tgtcgcggga tggaatcgcc       240
     caatcagtca tcggtctggc actggaagac tcccagttgt gccacgtcat ggagaaatct       300
     actgctaagg agatgtggga atccctccag cagtatcacg agcgaaagtc gatgtcagga       360
     aaagtttacc tgctccgtcg gctgatttcg ttgtgtttgc cggacaaagg caacatggct       420
     gaccatctgt cgcagatcac catgctcgtc aaccggcttg ttgggatagg tgaaaagctg       480
     tcggatcact ggttgattgc catcatttta tcgagccttc cggaatctta taacgtgctc       540
     gttatgtcct tggaatcgcg accagaggaa gatttgacat tggacttcgt caaggggcgt       600
     ttgttggagg aatggagacg ccgatgtgaa catggacagc acccatcggt ttccgaagaa       660
     tccgtgttgc aagcagctaa aacaccagcc aaaacgaaat tcaagtgcca ttattgcggt       720
     aaggaaggcc attataagcg ggattgcccg aagttcaagc aagaccagca gcggaagcaa       780
     aacactggtt ccgggaagca agatggcagc gatcgggatt caggctggga tggttccagc       840
     ggaagagcgc agaaggtaaa caaagcggag tcggatggac aagtttgttt cggtgtgcgt       900
     tcgaatgcgg ctgatgatgt ttggttcctc gattccggct gcacgttcca tatgaccggg       960
     gacatttcga agctggacgt cattgattct tcgcatcggg agcaaatatg cctggcggat      1020
     gggaataagg ttttctcgga aggcatcggc gacagacaac ttcaagcgga caacgggaga      1080
     ggtggttccg ttgatttgaa gttacagaag gttttacacg taccagtttt gacgaataac      1140
     ctgctatccg tcagcaagat tgctgatgaa gggtacaagg tggtatttga ccggaatggc      1200
     tgccgaatca agaagaacga ggatatagtc gtcgctgaag ttcggaatgg gaacctgtat      1260
     cagcttaagc ttcgaggtga acattcgctg caagcaactg cacgccatcg ggatgattgc      1320
     caacatttgt ggcaccgccg tttggggcac cgccatcccg acgacattag caagatcgtt      1380
     cgcaacgaac tgggaagtgg tctcaagctc gtcgactgtg ggattcggtc ggtctgttcg      1440
     acctgttgcc aaggaaagtt gtcatgccta ccctttccga agcaatcgga gtcgaaaacg      1500
     aaggaaatac tggatctagt ccatacggat ttgtgtggcc agatggaggt tccgacgcca      1560
     ggcggcaatc attacatcat gaccgtcatt gatgattgca gccgtttctg cgttgtgtac      1620
     ctgttgcagc ggaaatcaca ggcagcagaa aagatccagg aatacattga tatggtccgc      1680
     acacagttcg ggaaggttcc gaaggtcatc cgaagtgacg gcggtggtga atacacaggt      1740
     gagtcaatga aggcggtgct ccggaggaac ggtgtcgtct agcagctgac tgcaccttac      1800
     tgcccgcagc aaaatgggaa agcagagaga aagaaccgtt cgctcattga gatgacgcgc      1860
     tgcttactct ctgaggctgg cttggatcaa aaatattggg gcgaagcggt atgtacggcc      1920
     aactatatcc tgaaccgcgt accagcttcg gccactggaa ggacgccctg tgagctgtgg      1980
     cacggagaca agccgaacta cagtcacatg aaggtgtttg gctctccggc cttcgttcac      2040
     gtgccgaaag agcgaaggaa gaagttggac caaaagagcg ttcgaatgat tttcgtcggc      2100
     tatgctgaag ggaggaaagc gtaccgcttc ctcaaccccg acacaaacac tgtggtaatt      2160
     agtcgggacg caagattcgt tgaagagcta gtaggtaacg aaaccatcag agaggtgcta      2220
     cgcagaaagg atgtcaagat cgatccggct gtagtcgtga acgtggatga agcggactca      2280
     gtgcacagcg aagaagatcg agaagaagaa tatcgattca gtgcatcgga tgaagagttt      2340
     ctttcggtgg agcaaggaag cgaggagtct gagttcgaag gatttccgga ggatgaaatt      2400
     cggcgccgtt ctcacaggcg taacaagggg aagccaccga cacgtctaat tgaggagatc      2460
     aacgctgtta gcacgcagga ggagttcgag ccggcgtcgt atcaggaagc agtgaattgt      2520
     ccacagaaga agatctggtt gaaagctatg cacgaagaac tcgcatcgca ccgtgagctt      2580
     ggatcatggt cgctggtgga gctgccgccg cagaagaaaa ccattggcag caaatgggtg      2640
     tattccatca agcggaacga gaagggcgac gtcgttaggt acaaagcgcg cctagtggcg      2700
     cagggttgtg gtcagaaacc cggcgtcgac ttcgaggagg tttatgcgcc cgtagccaaa      2760
     caggccacgt taagagcctt gttggctgtg gctagccaac ggaaaatgca tctcaagcac      2820
     ttggacgtcc gggctgcata ccttcacggc gacctcgccg aagaagtttt catgcggcag      2880
     cccccggggt tcgctgcacc aggtcgagaa cgaatggtgt gtcgtcttca taaaagcgta      2940
     tatggcctcc gacaatccgc tagatgttgg aacagccggt tcgacgacgt gctcaagaag      3000
     atagggttca agcagagctc ggctgacccc tgtctgtaca catcggagat caaaggtaag      3060
     aagatttatg ttctgattta tgttgacgac gtcgttgttg gatgcgagga tgaaagcctg      3120
     atcgaccgag tgtacgccga gttgaagaag tacttcgaca taacttcgct ggggaatttg      3180
     aaatactttc ttggactgga ggtgaaccgt gttgccggga attacagtgt ctgcctggcg      3240
     ggatacattc agcgaactgc acagaaattc ggactgggtg attgtaagtc ggcgcgcacg      3300
     ccaatggaag aaaactatgc tcgtggcgag atcgaaagcc cattgttgaa ggattcatct      3360
     gtttatcgga gcctggtcgg gtcactcctg tacatcgctg ttcatgctag gcccgatata      3420
     gctcatgcga catcagtact cggccgcaaa gtcaaccaac catctgaggc tgactgggtg      3480
     gctgcaaaac gggttgttcg atatttgcga ggtaccctaa acaagaagct ctctttcaac      3540
     ggatcatcta tggagttaat gggctttgct gacgcggact gggcgggtga ctgtcagtcg      3600
     aggaagtcga cgtccggtta tgttttcaag ataggaggag ctgccatttc gtggcggagc      3660
     gccaagcaaa gttcagtatc cctttcatcg atggagtctg aatacatctc actctgtgat      3720
     gcggctcaag aaacgatttg gctaaggcgt attctggaag acatcggggt gaagcaaaag      3780
     ggacctacaa ccatctttga agataatcaa gcatgtcttg cgtttgtcag gtccgagcga      3840
     acgacgaaac ggtctaagca tattgagacc aaggagatgt ttgtccagga tctctgcagg      3900
     aaaggtgtga tcaagctgga gtatctgtgc tctgaagaca tgattgccga cgctctgacg      3960
     aaatctctcg gaacggtcaa ggtcaacaag tttgcggaga agatgggatt gaactgaaac      4020
     cagcgtcgac caatttaaat taaggaggag                                       4050
//
ID   Copia-36_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   11-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-36_AA_;
KW   Copia-36_AA-I; Copia-36_AA-LTR.
XX
NM   Copia-36_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 960-960 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 214 BP; 55 A; 41 C; 44 G; 74 T; 0 other;
     tgttggcata taatttactt tgggtcgaca tgcagagaag taattctggc agcactgcac        60
     attcggtgtg gtgttcgcgc tcaaaataaa aacattgttc tgtctgtttt caaagttgaa       120
     ataaagcaca cgcgtttttt ctttcgttga tcgtatattt cgtcgtagta agttagctag       180
     ttccgaaaat ccttttgctt ccacctggcc aaaa                                   214
//
ID   Copia-36_CQ-I repbase;    DNA;    INV; 4173 BP.
XX
AC   AAWU01006152;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-36_CQ_;
KW   Copia-36_CQ-LTR; Copia-36_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4173
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 375-375 (2011).
XX
DR   GenBank; AAWU01006152; Positions    1086    5258.
XX
CC   Positions [1396-1932] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..4170
FT                 /product="Copia-36_CQ-I_1p"
FT                 /translation="MSQAGSFPALERLAGRENWADWKFAMQTYLEVEEFWT
FT                 AVKPAKKADGTYEAVDAVKDRKARGKIILHLERHNFCHVKDTKTAKEAWEA
FT                 LEAAFEDAGLTRRTGLIRKFGSTHLEDCSSMEEFVNTVMSTAHQLRGIGMV
FT                 IPEELVGGLLLAGLPESYRPIIMALENSGTVISGDSIKTKLLQELPVTSAG
FT                 AAYSSRKQERRPEQKRPPRPTGDSKGPKCRRCQKFGHIAKDCRSKDSNRRD
FT                 GDAWCTVLSTVNEDDHWYFDSGASNHFAKSKETLDNLENYSGTVVAANRGA
FT                 MKVVAKGSMKLWTTVSPDEKPIEVNDVQVIPDLSTNLLSVSQIVKRGNTVT
FT                 FDKGGVKVINAAGAIVATGSMVKDIFRLNQAVPKPQALAVTAAESLELWHK
FT                 RMGHLNFDGVRRLKNGLVSGVHYNESAVEKCKVCAMGKQTRLPFSKAGSRA
FT                 SDLLELVHSDICGPMEVQSLGGRRYYLSFIDDKSRRIAVYFLKQKSADEVY
FT                 DAFEDFRCKAERQTGRKMKILRTDNGKEFTNKKLQVLLSRLGIRHQTTVDY
FT                 TPEQNGLAERGNRTIVERARCMLFDANLPKTFWAEATGTAVYLANRSPTKG
FT                 HDKTPEEVWTGRKQNLAHIRVFGTPVMVHIPKQKRKKWDAKAHECILTGFE
FT                 EDIKAYRLWDPIAKKLIKRRDVTFLREGGVPASTPVSAKQPMVIRLDFEEP
FT                 IPCVQEEDEPPVQLEEAEPVVDDVPQDPEVIAELENDNAEVEVEVEDAEPL
FT                 AGPSCDVTPIALPSRPLHPPGSPALLRSGRERSLPGKFKDFILSSKGLSLP
FT                 SFTANSGYDEIVSDSETSGDENSDDTLVGLAARRQPPKGRDPVTPAEAMKR
FT                 GDAKLWKDAMDDEYRSLMENGTWELVQLPPDRKAIGCKWLFKTKEDEKGNI
FT                 VRHKARLVAQGFTQKFGVDFDEVFAPVARQETFRILLTIASRRKMVAKHVD
FT                 VKTAYLHGKLEETIYMKQPAGYTTGDVNTVCRLKKSLYGLKQSARVWNHKI
FT                 DAVFKQLGFSQAKADPCLYVRKTGRSTAYIIIYVDDMVIAAETEEEFEAIF
FT                 NGLQQHFTVTNLGDLKHFLGMEVERAADGFKLNQQKYIDKMASRFGLEDAK
FT                 KSKIPLDPAYLQQKEENDQLPNNTDYLSLIGGLLYVAVHTRPDIAVSTSIL
FT                 AQKSSRPTQLDWQEAKRVLRYLKGTSDHKLHLGSTGAGLEMYVDADWAGDH
FT                 RDRKSNSGYLVRFGGGLVSWGSRKQSCVALSSTEAELVALTEGCKELIWIQ
FT                 MLLGEFGIKINRAVPVYEDNQSCIKLVDGNKIEKRTKHIETRYFYVRDLKE
FT                 KKMIDLQYCPTEKMLADILTKPLQNLRIKMLREEIGLLPDHVEEE"
XX
SQ   Sequence 4173 BP; 1093 A; 1019 C; 1260 G; 801 T; 0 other;
     aaaggttatg ggcccaggaa gatttcaaaa ctgaacactt agaagaattt tgagaagcag        60
     ttattttttc aagaagttta cgtaaagttc cagagcaaga tgagtcaagc cggaagtttc       120
     ccagccttgg aacggcttgc tggtcgcgaa aattgggccg actggaagtt tgcgatgcag       180
     acgtaccttg aagtcgaaga attttggacc gctgtgaagc cggcaaagaa ggcggacgga       240
     acttacgaag ctgtagatgc cgtcaaggat cgcaaggcaa gaggcaagat catcctgcac       300
     ctggaacgtc acaatttttg tcacgtgaag gacacgaaga ccgccaagga agcgtgggaa       360
     gcgctcgaag ccgctttcga ggacgcgggg ctgacccgac ggaccggcct gatcaggaag       420
     ttcggttcga cgcacttgga ggactgttcg tccatggagg aattcgtgaa cacggtgatg       480
     tcaaccgcgc accagctgcg tggtatcgga atggttattc cggaggaatt ggtcggtgga       540
     ctgctgttgg cgggactgcc tgaatcgtac cgcccgataa ttatggcttt ggagaattct       600
     ggaacggtga tttctggaga ttcgataaaa acgaagttgc tgcaggaact cccggtgaca       660
     tcggcgggcg cggcctactc aagcaggaaa caggaacgca gacccgagca gaaacggcca       720
     ccacgaccaa ccggcgacag caagggtccg aagtgcaggc gctgccagaa gttcggacac       780
     attgcgaagg attgccgctc gaaggactca aatcggaggg acggagacgc ttggtgtacc       840
     gtactgtcaa ccgtcaacga ggacgaccac tggtacttcg attcaggggc ttccaaccac       900
     tttgcgaagt cgaaggaaac gttggacaac ctggagaact acagtggtac agtcgttgct       960
     gcgaacagag gtgccatgaa ggtcgtcgca aagggaagca tgaagctgtg gaccacggtt      1020
     tcacccgacg agaagccgat tgaagtcaac gacgtgcagg taattccgga cctatcgacg      1080
     aacctactct cggtaagcca aatcgtgaag agagggaaca cggttacgtt tgacaagggt      1140
     ggagtgaagg tgatcaacgc agccggggcc atcgttgcca ccggaagtat ggtcaaggac      1200
     atcttcaggc tgaaccaggc cgtaccgaag cctcaagcgc tcgcggtgac tgctgcggaa      1260
     tcgttggaac tttggcacaa gcggatgggc catctcaact tcgacggcgt gagacgtttg      1320
     aagaatggtc tagtctccgg agtccactac aacgagtctg ctgtcgagaa gtgcaaggtt      1380
     tgcgctatgg gtaagcaaac acgcctcccg tttagcaagg ccggttcgcg cgcaagcgac      1440
     ctgctggagt tggttcactc cgacatctgt ggaccaatgg aggttcaatc cctcgggggt      1500
     aggcggtact acctgagctt catcgacgac aagtcgcggc ggatcgctgt gtactttctg      1560
     aagcaaaagt cggcggacga agtctacgac gcgttcgagg atttccgctg caaggcggag      1620
     aggcagactg gtcggaagat gaagattctt cgcacggaca acggtaagga gttcaccaac      1680
     aagaagttgc aggttttgct cagccgcttg ggaatacgcc atcaaacgac ggtggactac      1740
     acgccggagc agaacgggct tgctgaacgc gggaaccgga ccattgtcga gcgtgcacgg      1800
     tgcatgctgt ttgacgccaa cctaccaaag accttctggg cggaggcaac gggcacagcg      1860
     gtgtacctgg cgaatcgatc tccaaccaaa ggccacgaca agacaccgga agaggtgtgg      1920
     actggacgta aacaaaatct ggcacacatc cgtgtgttcg gaactccagt catggtgcac      1980
     atcccgaaac agaagcggaa gaagtgggac gccaaagccc acgagtgtat tctgacaggt      2040
     ttcgaggagg atatcaaggc ctaccgcctg tgggatccga tagcgaagaa gttgatcaag      2100
     cgacgagacg taacttttct ccgtgaagga ggagtcccgg caagcactcc tgtctctgca      2160
     aagcaaccga tggtgattcg tctggatttt gaagaaccca tcccgtgtgt gcaggaagaa      2220
     gacgagcctc cggtgcagct ggaagaagct gaaccagtcg ttgatgatgt cccacaagat      2280
     cctgaagtca tagctgaact cgaaaacgac aacgctgaag ttgaagttga agtagaggac      2340
     gccgagcccc tggcaggtcc cagctgtgac gtgacaccta ttgcgctccc ctcgcgacca      2400
     ttacatccgc ctgggtcacc ggcgttgttg cgcagcggtc gggagcgcag tcttccaggc      2460
     aagttcaaag attttattct gtcgagcaaa ggcctgtccc ttccatcatt cacagccaac      2520
     tctggatatg acgagatcgt ttcggattcg gaaacaagtg gagacgagaa ctcggacgat      2580
     acactagttg gacttgcagc cagacgtcag cccccgaagg gtcgagatcc cgttacaccg      2640
     gcagaggcga tgaaacgtgg cgatgcgaag ctgtggaagg acgcgatgga cgatgagtac      2700
     cgatcactca tggagaacgg cacgtgggag ctggtccagc tgcctccgga tcgcaaggcg      2760
     atcggatgta aatggctgtt caagaccaag gaggacgaga agggcaacat cgtgcggcac      2820
     aaggccaggc tcgtggcgca gggcttcacc cagaagtttg gcgtggactt cgacgaagtt      2880
     ttcgcacctg tggccagaca agaaacgttc cggatcctgc tgacaatcgc tagccgtcgg      2940
     aagatggtgg caaagcacgt ggacgtcaag acagcttacc ttcatggcaa gttggaggag      3000
     accatctaca tgaagcagcc tgcaggatac acaaccggag acgtcaacac tgtgtgtcga      3060
     ttgaagaaga gtctgtacgg gctcaaacaa tccgctcgag tgtggaacca caagatcgac      3120
     gcagttttca agcaactggg cttcagccag gcgaaggctg atccgtgcct ctacgttcgg      3180
     aagaccggaa ggtcgacagc gtatatcatc atctacgtgg acgacatggt gatcgctgcc      3240
     gagactgagg aggagtttga agctatattc aacggcctgc aacagcactt caccgttacg      3300
     aacctcggag atctgaagca tttcctggga atggaagttg agcgagcggc cgatggattc      3360
     aagttgaacc agcagaagta catcgacaag atggcaagtc gattcggtct ggaggatgcc      3420
     aagaaatcga agattccctt ggatccagcc tacctacagc agaaggagga gaacgatcag      3480
     ctacccaaca acaccgatta tttgagcttg atcggaggtc tgctgtacgt agctgttcac      3540
     acccgaccag acattgccgt tagcacatcg attcttgctc agaagtcgag tcgtccgacg      3600
     cagctggatt ggcaagaagc aaagcgagtg ctacgctacc tgaaggggac gagcgatcac      3660
     aaactgcact tgggatctac cggtgcagga ctggagatgt acgtggatgc agactgggca      3720
     ggcgaccacc gggaccggaa atctaactct ggatatctgg tgcgttttgg cggcggactc      3780
     gtcagctggg gttcccggaa gcagagctgt gtagcgctgt catcaacgga agctgaactg      3840
     gtggcgctga ctgaaggatg caaggagctg atctggatac agatgctgct gggcgagttc      3900
     gggatcaaga tcaaccgagc tgtgccggtc tacgaggaca atcaaagctg catcaagctc      3960
     gtggacggca acaagatcga gaagcggacg aagcacatcg aaacccgata cttctacgtt      4020
     cgcgacctga aagagaagaa gatgatcgat ctgcagtact gcccgactga gaagatgttg      4080
     gcagatattc ttacgaagcc gttgcagaac ctgcggatca agatgctgcg tgaagaaatc      4140
     ggtctactac cggatcacgt cgaggaggag taa                                   4173
//
ID   Copia-36_CQ-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   AAWU01006152;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-36_CQ_;
KW   Copia-36_CQ-I; Copia-36_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 376-376 (2011).
XX
DR   GenBank; AAWU01006152; Positions     950    1085.
XX
SQ   Sequence 136 BP; 46 A; 26 C; 33 G; 31 T; 0 other;
     tggaagacga cgaagatcag atcacagtag actacgaata ggggagtcgg aggtgtaatg        60
     ggacgacagt ctaaaataaa attcattcta ttgcaaacac tcaactgaag tagttcggtc       120
     tctggctaat ctccca                                                       136
//
ID   Copia-37_AA-I repbase;    DNA;    INV; 4099 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-37_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4099
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4099
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 84-84 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..4089
FT                 /product="Copia-37_AA-I_1p"
FT                 /translation="MADANKFSFAKLNNSNWQCWKFRMEMLLMREELWYVV
FT                 SEEKPEEPTDAWKKDDQKARATIGLCIEESQYSFVKSANSAKLYWNNLREY
FT                 HEKTTVTSRVSLLKKLCNLNLAESGDLESHLIEIEGLFDKLTMAGQELQES
FT                 LRVAMILRSLPDSYGGLVTALESRPDADLTMQLVKSKLLDEYERRKERSGD
FT                 SSGAKAMKSATKPWHKPGSKSDSEKVCYHCKKPGHFQRNCRLLAKQQSDGN
FT                 KKKNEVKPNAKQAKDECSGVCFMASGEHNDAWYIDSGASCHMTNDKNFFSS
FT                 LSMKVGANVILADGKVAETAGCGEGVVHGVDGEGKVIEVKLKNVLYVPSLT
FT                 SGLISVDRLTSRGCMVVFRMNGCEVQDATGKVLVVGERSGCLYRLKLAETS
FT                 NQVQGKVHHLNCQHQWHRRLGHRDPTVISRINNENLGVGLNVSDCGIRQTC
FT                 EPCLEGKLARNPIPKTAERKSTKILDLVHTDLCGPMRTTTPGGKRFLMTMI
FT                 DDFSRFTVVYLLEKKSDAIQRIKEYVRYVENLFGRKPRVIRSDGGGEYANN
FT                 ELRAFFAAEGIKAQYTTAYTPQQNGVAERKNRSLQEMATTMLLDAGLAKRY
FT                 WGEAVLTAAYLQNRLPSRSVDTTPYQKWYGRKPELGHLKVYGCPAYVHIPD
FT                 VKRGKFERKANKLRFIGYSDEHKGYRFVDTETDRVTISRDARFLEMDDGSC
FT                 QEQKNEDSTNGDNEWCFVPEPKPAKKNEEELPEDSGEEVADECDVSELEQY
FT                 FDVSAESEDDPLCVKEELQEASSDEPVGVRRSERRTRGVLPDRMSDFVVGV
FT                 ATHSAEEPTTYAEAMGSSERDLWKDAMDCEMQSHQKIGTWELMQLPKGKKV
FT                 VGSKWVYKVKRNEANEIVRYKARIVAQGFTQLYGVDYSEVFSPVTKHATLR
FT                 VLLTLASQQQLVLKHLDVRTAYLYGDIEEDIYMRQPPGYEVRGKEKFVCKL
FT                 RRSIYGLKQSARCWNRKLSSVLSAIGFKASSADPCLYVATRNGEKVYLVVY
FT                 VDDFLVGCRSEKEINNVYEELGKHFEIVCLGDVKYFLGLEIGKDNGVYSLC
FT                 LSNYIDKLIVKLGLKDAKVAKTPMDQGYIKDETESKSFEDGTMYRSVVGAL
FT                 MYIAVCARPDIMTSAAILGRKFSSPTEADWTAAKRVVRYLKSTRTWKLRLG
FT                 GASNDELVAFSDSDWAGDKGTRRSTTGIVVYYGGGVVSWSSRRQECVTLST
FT                 MEAEYVALAETCQEVIWLRRLLEDFGVKQENATVVNEDNQGCLSFAKSERS
FT                 TKRSKHIETKHHFVKDLCDQGEVILKYCPTNEMNADILTKPLGLVKHYQFT
FT                 ANLGLFGEKQGTNH"
XX
SQ   Sequence 4099 BP; 1171 A; 760 C; 1221 G; 947 T; 0 other;
     ggttaggggc ccagaaagtg agattgcgga agaacgagaa ttttgcggaa aagtgcgagt        60
     tttcccggtt cggttgtgat tgcgtcggtc gcggttgtgc gtgccggcaa gatggcggat       120
     gcgaataaat tttcgttcgc gaagctgaac aacagcaatt ggcagtgttg gaaatttcgc       180
     atggagatgc tactcatgcg agaagaactc tggtacgtgg tttcggagga aaaaccagag       240
     gaaccgactg atgcatggaa gaaggacgat caaaaggccc gtgctacgat cggcctatgc       300
     attgaagaaa gtcagtacag ttttgtgaaa agtgctaact cggcgaaatt gtattggaac       360
     aatttgcgcg aatatcatga gaagacgact gttacatcgc gagtgtcttt gctgaaaaag       420
     ttgtgcaatt tgaacctcgc agagagtggc gatttggaaa gccacctgat tgaaattgaa       480
     gggttattcg acaagctaac gatggctggt caagagttgc aggaatcatt gagagtcgcc       540
     atgattttgc gcagtttgcc ggattcctac ggcggcttgg tgacggcatt agagagccgc       600
     cccgacgcgg atctcacaat gcaattagtg aaatccaagt tgctcgatga gtatgagcga       660
     agaaaagaac gatctggtga ttcaagtggt gcaaaggcga tgaaaagtgc tacaaagccg       720
     tggcacaagc ccggttctaa aagtgattcc gaaaaagtgt gctatcattg caagaagccg       780
     gggcatttcc agcgaaattg ccgcttgctt gcaaagcagc aaagtgatgg gaacaagaag       840
     aagaacgaag tgaagccgaa cgccaagcag gcgaaagatg aatgtagtgg tgtgtgtttc       900
     atggcaagtg gtgagcacaa cgatgcgtgg tacattgaca gtggtgctag ctgccatatg       960
     acgaacgaca aaaacttttt ttcgtcgctt tctatgaaag ttggtgcgaa tgtgattctg      1020
     gcggatggca aagttgccga aactgctggt tgtggggagg gagtagtgca tggcgtcgat      1080
     ggagagggta aagtgattga agtgaagctg aaaaatgtgc tctacgtgcc atcactaacg      1140
     agtggattga tctctgtcga tcgattgacc tccagaggat gcatggtcgt tttccggatg      1200
     aacggctgtg aagttcagga cgcaactggt aaggtgctgg tcgtcggaga gcgatccggc      1260
     tgcttgtatc gtttgaagct ggcggaaacc tcaaatcaag ttcaaggtaa ggtacaccat      1320
     ttaaattgtc agcatcaatg gcaccgacgt cttgggcatc gcgaccccac agtgatttca      1380
     agaatcaaca atgagaacct gggtgtgggt ttgaatgtta gcgattgtgg tattcgccag      1440
     acatgtgagc cgtgcttgga agggaaatta gctcgtaatc ccattcccaa aacggcggaa      1500
     aggaaatcga cgaagatttt ggatctggtg cacaccgatc tgtgcggacc gatgcgtacg      1560
     acaacacccg ggggaaagag gtttcttatg accatgatag acgactttag ccgttttaca      1620
     gttgtttatt tgttggagaa aaagtccgac gccatacagc gaatcaagga atatgtccga      1680
     tacgtggaaa atttgttcgg tcggaaacca agagttattc gatcggatgg agggggagaa      1740
     tacgcgaaca acgagttacg agcgtttttt gcagcagaag gaattaaagc tcagtacact      1800
     acggcgtaca cccctcagca gaacggtgtg gcagagagga aaaaccgttc tttgcaggag      1860
     atggcgacga cgatgctgct cgatgctggc ttagctaagc ggtattgggg cgaggcagtg      1920
     ctgacggctg catatcttca aaacaggcta ccgtcgcgtt ctgtcgatac caccccgtat      1980
     caaaagtggt atggtcggaa accggagtta gggcatttga aggtgtatgg atgtccagcg      2040
     tacgttcaca tcccggacgt gaagagagga aaattcgaaa ggaaggcgaa taaattgcga      2100
     ttcatcggat actcagatga acacaaaggg tacaggttcg tcgatacgga gaccgataga      2160
     gtgacaatca gccgcgacgc cagatttcta gaaatggatg acgggtcatg ccaggagcag      2220
     aaaaatgaag attccacgaa tggcgacaat gagtggtgct tcgtaccgga gccgaaacca      2280
     gcgaagaaga atgaagaaga gctaccggaa gattccggag aagaagtagc ggatgagtgt      2340
     gatgtgagtg aactcgaaca atattttgat gtgagtgctg aatctgaaga cgatccacta      2400
     tgtgtgaagg aggagctcca ggaagcttcg agcgatgaac cggtaggtgt caggcgatct      2460
     gagcgccgta ctcgtggtgt attgccggac cgtatgtccg atttcgtagt tggagtggca      2520
     acgcattcgg cagaggagcc tacaacttat gcggaggcaa tgggaagttc ggagcgcgat      2580
     ctttggaagg atgcaatgga ttgtgagatg caatcacatc agaagatcgg aacgtgggag      2640
     ctgatgcaac tgcctaaagg gaagaaagtc gtaggcagta agtgggttta taaggtgaag      2700
     cgaaatgagg caaacgagat agtgagatac aaggcgcgca ttgtggcgca gggatttacc      2760
     cagctttatg gtgtagatta ctctgaggtg ttttcccctg tgaccaaaca tgctaccctg      2820
     agagtcctgc tgacattagc cagccaacag caactcgtgt tgaagcatct ggatgtccga      2880
     acggcgtacc tgtatggaga cattgaggag gacatttaca tgcgccaacc gcccggatat      2940
     gaggttcggg gaaaggagaa gtttgtgtgc aagctccgta gaagtattta cgggctaaaa      3000
     cagtcagcga gatgctggaa cagaaaacta tccagtgtat tgtcggctat aggattcaag      3060
     gcaagttcag ctgatccttg cctctacgtg gcgactagga acggagagaa ggtttattta      3120
     gtcgtgtatg tcgacgattt tttagttgga tgccggagcg agaaggagat caacaacgtt      3180
     tatgaggaac tcggcaagca ttttgagatc gtgtgtttgg gagatgtgaa gtatttccta      3240
     ggactagaaa taggaaagga caacggagtg tacagtttgt gcttgtcgaa ctacatcgat      3300
     aagttgattg tcaagctagg tttgaaggac gcaaaggtag caaagacccc aatggatcaa      3360
     ggatacatca aggatgagac ggaaagcaaa tcttttgagg acggaacgat gtacagaagt      3420
     gtagtgggtg cactcatgta cattgctgtt tgtgcacgcc cagatattat gacaagtgct      3480
     gccatccttg gcagaaagtt cagttcaccg acagaagccg attggacagc tgccaaacga      3540
     gtagtccggt acttgaaaag taccagaaca tggaagttac gactaggagg agcgagtaat      3600
     gacgaactag ttgctttctc tgattctgat tgggcaggcg ataaaggaac gcgccggtca      3660
     acaaccggaa tagtagtcta ttatggagga ggagttgtgt cttggtcgag ccgccggcag      3720
     gaatgcgtga cgctatccac gatggaagcg gaatacgtag ctcttgctga aacatgtcaa      3780
     gaagtgattt ggttgcgacg tttgctcgag gattttggcg tgaagcagga gaatgcaacc      3840
     gttgttaacg aagataacca aggttgccta agttttgcga agtctgagag atcaacgaag      3900
     cgttcgaaac atatcgagac gaaacatcat tttgtgaaag atttgtgtga ccaaggagaa      3960
     gttattctaa agtattgccc gacgaatgag atgaacgcag atatactaac gaagcctttg      4020
     gggctagtga agcattatca gtttactgct aatttgggat tgtttggaga gaagcaaggg      4080
     accaaccatt gaggaggag                                                   4099
//
ID   Copia-37_AA-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-37_AA_;
KW   Copia-37_AA-I; Copia-37_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-279
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 961-961 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 279 BP; 67 A; 71 C; 61 G; 80 T; 0 other;
     tgttgtggtt ttacaatgga ttgcccctga tgccgaccct gttaagtgtt cacccctggt        60
     ggtcatcgtc atcgaccgac caacggcgcg ccaaaagtgc gcgcgaacga agagagaaga       120
     aagcgaagaa aacatttttt tcattccacc attgttaacc gaccgaagta gaagtaaatt       180
     acaagttcag ttttgtttcg taaagtgtcc gtgtgttaat tcatttcttc ccaattccct       240
     acgtgatttc cactgcgcgt gtgtcctctg ccgccctca                              279
//
ID   Copia-37_CQ-I repbase;    DNA;    INV; 5382 BP.
XX
AC   AAWU01006939;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-37_CQ_;
KW   Copia-37_CQ-LTR; Copia-37_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5382
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 377-377 (2011).
XX
DR   GenBank; AAWU01006939; Positions    4674   10055.
XX
CC   Positions [2545-3075] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2428..5382
FT                 /product="Copia-37_CQ-I_1p"
FT                 /translation="MGHLGNSSLKMLRNGLVSGVQFKDAVADNCVVCAKGK
FT                 QTRLPFPKKGHRANDILELVHTDICGPMEETSVGGSRYYVSFVDDKTRRIA
FT                 VYFLETKSESEVLHAFDEFRTLAERQTGRKLKVLRSDNGKEFVNRSFQKRL
FT                 RELGIKHETTVEYTPEQNGMAERVNRTCVERARCMLFEAKLPKSFWAEAVS
FT                 AAIYLINRSPTKGHNLTPEEAWSGRKPDLSHVRVFGIKAMAHIPKQKRKKW
FT                 DEKSKETILVGFDEQTKGYRLYDPVKKSIFKSRDVIFIGEAGRPETAKPAE
FT                 SSNPKRVRTFVSLEFDNISEPVAEPIVQEMPLAANPEVPDAERDDVPEQPA
FT                 ALAHSGPEVVPPATEPETSEDEESESEAEFFSQVESSVGESSDDSDVTILA
FT                 LPPRKTLYPPESQVLRRSGRERAVPGKYKNYVLPSKGLPSHHSTDNPSSDD
FT                 FAEAGPSSVKHGLKASKGATKKSTDPRTVAEALRSDEADLWRTAMGEELQA
FT                 LMDNNTWELVQLPADKKAIGCKWLFKTKRDEHGRVVRHKARIVAQGFKQKY
FT                 GTDYDEVFAPVAKQVTFRVLLTIASRRNSVVKHVDVKTAYLNGELEETIFM
FT                 RQPEGYTTGDERTVCRLRRSLYGLKQSARVWNRKVDSTFKSIGFQQSKSDP
FT                 CLYMRRQNDTFAYILIYVDDMVIVTQTEEEFNAIFESLHRNFTVTNLGDIR
FT                 HFLGMEVERSDAGYKLNQATYIRKLVQRFNLEQAKPSKVPLDPGYLQQKEE
FT                 ECKPLPNNQDYLSLIGGLLYVAVHTRPDIAVSTSILAQKSSKPNQQDWNEA
FT                 KRVLRYLDSTINHKLQLGATNEELQMFVDADWAGNSRDRKSNSGVLLQFGG
FT                 GLVAWCTRKQTCVALSSTEAEFVALAEGCQELIWTRRLLEEVGEAALGPTR
FT                 VNEDNQSCIKLVESDKIERRSKHIETRYFFVRDLQEKGTIRLQYCPTENML
FT                 ADVMTKPLARIKLEKLRSAIGIRPDQFEEE"
XX
SQ   Sequence 5382 BP; 1461 A; 1286 C; 1469 G; 1166 T; 0 other;
     ttctaaaagg ttatgggccc agattcaaga attgaaagaa gatgaatccg caagtcaacg        60
     gtcaagttcc agacaaccct caagccccgc agcaagttcc ccatcactca aacatgctca       120
     gtctcccgtc gattgaacat ttaaccggcc gggacaattg gtcgacgtgg aaattcgctg       180
     ttgagacgtt cttggaactg gaggagcttt gggaagttgt gaagccaacg ttgaacgctg       240
     acggaacctt gccaccgatt gacgaacgga agtgccgcaa agcgcgcggc aagattatcc       300
     tactactaga cccaacggtc tatgtgcacg tgaagggcgt caagacagct cgtgaagcct       360
     ggtcgaagct ggaagcggct ttcgaggacg cgggactgat gcggcgcgtt ggtcttctac       420
     ggaagctgat tacgacgacc ctcacggcat gcggttctat ggagatctac gtgaacgaaa       480
     tcgtgtccac cgcccaccag atccgcggcg ttggatttga tgtcagcgag gaatggatcg       540
     gaactttcct actcgctggt cttccggaag agtacaagcc gatgctgatg gccctggaaa       600
     attctggtct cgccattacc ggggacagca tcaagacgaa gttactccag gaaatgcatt       660
     cggtcccgga gaagactgcg ttcgtcggac gaaaaccgta tccgccgaag cagaagccca       720
     gcgcagccca aggacggtca gctgagcaac aaccaaaagg accgaagcac agagtaatcc       780
     agaggacgca gtccgaacaa atgtcatcga attttgtggt tgcgttacgg ttgatgttgt       840
     tggattttcc taagggtagc aggcgttata tttttttcag gcgttatgtt tttgaacgga       900
     tatttgaatt taatctagta gccaataatt aaaaataatt tcctgtcaaa ctgactttcg       960
     tttcgttttg caaaaaaaaa aatcgacgaa ccgatcgggg ggtcctgttt ttaatccacc      1020
     gggcaaactg acctcgtctc ggggccgtcg gaaagtcggc tttgaagaag tgtcctgttt      1080
     aacggaagga ggaaatccgc caggctcgga ttgtgaaaaa aattgtatgt gttttttaaa      1140
     tgtttgaata taatatggca aataaaattg taaacggcta taaatttaat ttatataatg      1200
     ggaattgttt cttattttca aattaaaacc gaaaggaggc aatatataat gcgcgggaca      1260
     tgttttttgg gagctgcggg gttttcgata gcaagaaaac tgtttaaatc atcaaaagtt      1320
     ggtcacatca cctcctcttc tcccctccaa ggccgagaac acaaacgcaa tatatcacaa      1380
     atcaatagaa tttggaactt gagcgatggc acttttgaga gtggattgaa agatgggctg      1440
     cgaatcgata acacaactcc tactcgaaat tgacctctcg gtagcatttc aatcatgcaa      1500
     ttaatcagcc actgcagcca tggcgacgta cgcaaacctg tgctagcaac tttcccatct      1560
     gcatgcattc cgcggtgttt tttccaagac gttaagacgc cctgcggctc gggaaacgcc      1620
     ttatccaata tttaccggaa aaacagataa cagtttgaaa gcaacctaaa aaatatgaat      1680
     tttcaactga ttgagtcgga ttgagtaatg ttttgaattt ctgacaaaga aaactgtcat      1740
     tgaaaaacgt aacgcctctg aaaatccagt gaactaagat agcaaaaaat agcttctcat      1800
     gttaggtttt tcctgaaggg gggatgtacc acgatgtacc gcgtaacgca accataaatt      1860
     aaataccagt gctccctctg gattactctg tgaccgaagt gcaagcgttg ccatcgacac      1920
     ggacacgttg ccagggactg ccaatcaaga actggttcag ccttcgcaac ggtgttggcg      1980
     acgaacgaag gttttgaaga tgacagctgg atttttgatt cgggagcatc ggagcatttc      2040
     acgaagaatc gtagcctgct gactggtgaa cgggcggcga gcggtatcgt tatggcagct      2100
     gacaagcaac cgatgaacat cgtagccacc ggaaccgtcc tgctcaagcc gaagtgtaac      2160
     tccgaaagcc tgccgattga aatcaaccac gtcaagttca tcccttcgat gtccaacaat      2220
     ctcttgtcgg tgagtcaaat cgttcgacga ggtttcgagg tacgttttac caaccgtggc      2280
     gtcagaatcg aggatgcgga tggcgatctc atcgctaccg gccgccacga cgtgaagaac      2340
     gggttgttcc agttcgagga aaaggagagg gatgttgcgt tgaccctagc agcttcacca      2400
     ccaagcatgg acgtctggca ttgaaggatg ggacatctcg gcaattcaag tttgaagatg      2460
     ctgagaaacg gcctagtctc tggagtgcag ttcaaggacg ctgttgctga caactgcgtg      2520
     gtgtgcgcta agggtaagca aaccagacta ccatttccga agaaaggaca ccgtgccaac      2580
     gatatcctgg aactcgtgca cacggacatt tgcggaccga tggaggaaac gtcagttggc      2640
     gggagcaggt actacgtgtc gttcgtggac gacaaaacga gacggattgc agtctacttc      2700
     ttggagacga agtccgagtc tgaagttctt cacgcgttcg acgagttccg cactctcgct      2760
     gagagacaaa ccgggcggaa gctgaaagta ctccgcagcg ataacggtaa ggaattcgtt      2820
     aaccgttcct tccagaagcg tctacgtgaa ctcggtatca agcacgagac cactgtagag      2880
     tacaccccgg aacaaaacgg tatggccgag cgggtcaacc gtacctgtgt ggagcgagca      2940
     cgctgtatgc tattcgaggc gaagctaccg aagtcatttt gggcggaggc ggtgtcagct      3000
     gcgatttatc tcatcaatcg ttcgcccacc aaaggtcaca acctcacacc ggaagaagct      3060
     tggagtggac gcaagcctga cctgtcgcat gttcgagttt tcgggatcaa ggcgatggca      3120
     cacattccaa agcagaaacg caagaagtgg gacgagaaat cgaaggagac catccttgtc      3180
     ggtttcgacg agcaaaccaa ggggtatcgt ctctacgatc ctgtgaagaa gagcattttc      3240
     aaaagccgag acgtgatctt cattggcgaa gcaggacgac cagagactgc aaaaccagcc      3300
     gaaagcagca acccgaagcg agtgcgtact ttcgtgagtc tggagtttga caacatctcg      3360
     gaacctgtag ctgaacctat cgtgcaggag atgccacttg cggctaaccc cgaggtacct      3420
     gacgctgaac gcgatgatgt cccggagcaa ccagctgcgt tggcacattc cggaccggag      3480
     gttgtgccac ctgcgaccga gccagagacg tctgaggatg aagagtcgga gtccgaagct      3540
     gaatttttct cgcaagttga atcaagcgtt ggcgagagct cggacgacag tgacgtgaca      3600
     atcttggcgc tccccccgcg aaaaactcta tatccacccg agtcacaggt gttgaggcgc      3660
     agcggcaggg agcgcgccgt cccaggcaag tacaaaaatt atgtccttcc gagcaaaggc      3720
     ttgccgtccc atcactccac agataaccca tcttctgacg attttgcgga agccggcccc      3780
     agcagcgtta aacatggact caaggcgagc aagggtgcta ccaagaagtc gacggaccct      3840
     cgaacggtgg ccgaggcgct gcgcagcgac gaagctgatc tgtggcggac cgccatgggc      3900
     gaagagctcc aggcgctgat ggacaacaac acgtgggaac tggtgcagct tcctgcggac      3960
     aagaaggcga tcggttgcaa atggttgttt aaaaccaaac gtgacgagca cggacgtgta      4020
     gttcgtcaca aggcacggat cgtggctcaa ggatttaagc aaaaatatgg cacggactac      4080
     gatgaagttt tcgcacctgt ggcgaagcag gtgactttcc gagtgttgct aaccattgcg      4140
     agccgcagga actccgttgt caagcatgtc gacgttaaaa cggcttatct gaacggcgaa      4200
     ctggaggaaa caattttcat gcggcaaccc gaaggttaca ccaccggcga cgaacggacc      4260
     gtttgtcgtt tgaggaggag tctgtacggt ttgaagcagt ccgcacgtgt ttggaaccgt      4320
     aaggtggact caactttcaa gtcgatcgga ttccagcagt cgaaatcgga tccttgcctg      4380
     tacatgcggc gccagaatga tacgtttgcg tacattctaa tctacgtcga tgacatggtc      4440
     atcgtcacgc agaccgagga ggagttcaac gccatcttcg agagtctgca tcggaatttc      4500
     accgtaacca acctcggtga tatccgacac tttctcggaa tggaagtcga gagaagcgat      4560
     gccggttaca agctgaacca agcgacgtac atccggaagc tggtacaacg gtttaatctg      4620
     gagcaagcga agccgtccaa ggtaccactc gaccccggct acctgcagca gaaggaggag      4680
     gagtgcaagc cacttcctaa caaccaggac tacctcagct tgattggagg tctgctgtac      4740
     gtagcggtgc acaccaggcc agatattgca gtgagcacgt cgatcttggc ccagaagtcc      4800
     agcaagccga atcaacagga ctggaacgaa gccaagcgag ttctgcgcta tctggattcg      4860
     acgatcaacc acaagctcca gctgggtgcc acgaacgaag aattgcagat gttcgttgac      4920
     gcagattggg ctggaaattc acgggaccgg aagtcaaact ctggcgtact gttgcagttc      4980
     ggaggtggac ttgtcgcatg gtgcaccagg aagcaaacct gtgtggcgct gagctcaacc      5040
     gaagcagagt tcgttgccct agctgaagga tgtcaggagc tcatctggac ccgcagattg      5100
     ctagaagaag ttggagaggc agctcttgga ccaaccaggg tgaacgagga caaccagagc      5160
     tgcatcaagt tggtggaaag cgacaagatc gagcgccgaa gcaaacacat cgagacgcga      5220
     tacttttttg ttcgagatct gcaggagaag ggaacgataa ggttgcagta ttgccccacg      5280
     gagaacatgc tagctgatgt gatgacgaag ccgcttgcga ggatcaagtt ggagaagctg      5340
     cgttcggcga ttgggattcg accggatcag ttcgaggagg ag                         5382
//
ID   Copia-37_CQ-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   AAWU01006939;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-37_CQ_;
KW   Copia-37_CQ-I; Copia-37_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-129
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 378-378 (2011).
XX
DR   GenBank; AAWU01006939; Positions    4545    4673.
XX
SQ   Sequence 129 BP; 38 A; 25 C; 28 G; 38 T; 0 other;
     tgtcggtgca agtaggcgtc ctgattgagg acccaatcgt agtagacgta attgatgacg        60
     gaaaataaaa ttatcattct tgttcaaacc actgagctga gtagtttact ttttacgagc       120
     tctaccaca                                                               129
//
ID   Copia-38_AA-I repbase;    DNA;    INV; 4102 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.01, Created)
DT   18-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-38_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4102
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4102
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 85-85 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..4076
FT                 /product="Copia-38_AA-I_1p"
FT                 /translation="MSDLKFAIPKLSGTNWQTWKIRLESLLSREDLWHVIA
FT                 EEIPGEDERDDSWESADRKAKATIVLLLEDNQLPLVKNCVFARDAFNALKA
FT                 YHQKTSRSVRVSLLKKLCSTNLPEHGDLEKHLLEIDDLFDRLSAAGTELDK
FT                 DTQICMLLRSLPPSFDGLVTALDSRSDNDISLDVVKSKLSDEYHRRLERDA
FT                 STSKVEKAMKSVGNTPRNDTRVCHFCNKPGHIKRYCRKFLSSRKDNESAPS
FT                 GARRNDGAKAKAVQSEGSSVAFSADSEVSRESSRAWVIDSGASAHMTNDRS
FT                 FFKSLREFDGGLITLADGKKTAIRGEGTGILFGIDGQGKVKQIEFGCVKFV
FT                 PGLSTSLISVGKLIEKKLEVKFNDKGCQIVDSGGTVVATGNRSGGLYNLRL
FT                 AERSMVASAGCHREDCQHQWHRRLGHRDWAAIERINKEQLATGMSVTDCGL
FT                 RIVCECCLEGKSSRFPFPEVIERKSTQVLDIVHTDLCGPMSNVTPSGNRYV
FT                 LNLVDDFSRFTVTYLLKNKWEAAESIKAYVRWVDNHFGRKPRVIRSDGGGE
FT                 FNNKELRKFYQAEGIQPQFSTPYSPQQNGVAERKNRSLSEMATCLLLDAGL
FT                 EKRFWGEAIRTATYLQNRLPSRSVKQTPYELWWGRKPDLGHLRVFGSEAYV
FT                 HVPSVKRTKMDSKARKLTFVGYSMEHKGYRFLDRETDQITISRDARFIELK
FT                 NGSSSVEVPIAAPASGEKKKSNGKNRGDQREDEEDIQLLPLIEKKEEDRAS
FT                 SNGEFEDAEEGESPVVRRGVRSTRGVMPKHYEDFIVDFAACATEEPKDYRE
FT                 AMKTNEWRSAMEDELASHAKNGTWELVPLPPNKKVVGSRWVFKVKRDENNK
FT                 IVKHKARVVAQGYTQSFGEDFDQVFAPVVSHATFRTFLVIAAKRKLVVRHL
FT                 DVKTAYLYGSLEEEVFMRQPPGYRAAGQEELVCRLKRSIYGLRQSARCWNR
FT                 RLNAALVKRGFVQSKADPCLYVRNNNGVKTYLLVYVDDFLLGSSSEEEIRR
FT                 ICESLSEEFEITCLGGVRHFLGMEIQLEEGVYQISLSNYIDNLIGKHGMQE
FT                 AKTAKSPMDIGYPKQTEEDGLFEDTTKYRSLVGGLLYLAVIARPDIAACTA
FT                 ILGRKVSAPCESDWSAAKRVLRYLKGTKNYKLRLGGDLDQPLAGYSDADWA
FT                 GDMESRRSTTGYVISFGGGVVSWASRRQNAVTLSSMEAEYVALSETCLETL
FT                 WMRKLLSDFDEAQDTPTVIKEDNQGCLAFVKTERSSRRSKHIDTKERFIRE
FT                 LCDKNEIVLEYCSTVDMLADLLTKPLGPLKHQKFCNMLGFRMKT"
XX
SQ   Sequence 4102 BP; 1101 A; 840 C; 1229 G; 932 T; 0 other;
     ggttatgggc ccagccggat tggtacagaa aaagtggtga aggcattatt ccggaacagc        60
     ccgtgcgcgt cgctgtttgt gtgctcgcga aagactcgtg gttcgagtag tgtaaaaacg       120
     tttggaatcg ttctccagtg ttgtggacct gccgtgtgaa aatgagtgat ctaaagtttg       180
     cgattccgaa actgagcgga acgaattggc agacgtggaa gatccgcttg gaaagtttgc       240
     tttcacgcga agatttgtgg catgttattg ccgaagaaat tcctggagaa gatgagcgtg       300
     acgatagttg ggaaagtgca gatcgtaaag caaaagctac gatagtgtta ttgctggagg       360
     acaaccagct accgctcgtg aaaaactgtg tattcgctcg ggatgcattt aacgctctca       420
     aggcctacca tcagaagacg tcgcggtcag tgcgtgtgtc tcttttgaag aaattgtgct       480
     caaccaatct tccagaacat ggtgaccttg agaagcacct tctggaaatt gatgatttgt       540
     tcgatcgatt aagtgccgcg ggaacggagc tcgataaaga cactcaaatt tgtatgctcc       600
     ttcgtagttt gcctccatcg ttcgacggtt tggtgacggc attagacagt cgatcggata       660
     atgacatatc tcttgacgtg gtgaagtcga aattatcgga cgaatatcac cggcgtctgg       720
     aacgggatgc ttccacttcg aaggtggaaa aggcgatgaa atcggtgggc aacacgccga       780
     gaaatgatac gcgcgtttgt catttctgca acaaaccggg acacatcaaa cggtattgcc       840
     gcaagttctt gtcgtcgcgt aaggacaacg aaagtgctcc atcgggtgcg agaagaaatg       900
     atggtgcaaa agcgaaagcg gtgcaaagtg aaggtagtag tgtcgctttc agtgccgata       960
     gcgaggtcag tcgcgaaagt tcgcgtgcgt gggtgattga cagcggagcc agtgcccaca      1020
     tgacaaacga ccgatccttc ttcaagtcgt tgcgtgagtt cgacggcgga ctgataacgt      1080
     tggctgacgg gaagaagaca gccattcgcg gcgaaggcac cggtattctg ttcggtatcg      1140
     atggacaagg aaaagtgaag caaattgaat tcggttgcgt gaaatttgtg ccgggacttt      1200
     cgaccagttt aatttcagtc gggaaactga ttgagaagaa acttgaagtg aagtttaatg      1260
     ataaaggttg ccagattgtg gattccggcg gaacggtagt ggcaacggga aatcgtagtg      1320
     gtggattgta caatttgcgt cttgcggagc ggtcaatggt tgcgtcagct ggatgccacc      1380
     gggaggattg ccagcaccaa tggcaccggc ggctcggcca ccgtgattgg gcggccatcg      1440
     agaggatcaa taaggagcag ctggcaacag gtatgagtgt gactgattgt ggcttgcgca      1500
     ttgtgtgcga gtgctgcttg gagggaaaat cgtcccgatt ccctttcccc gaagtgattg      1560
     agcggaagtc aactcaggtg ctcgatatcg tccacacgga tctctgtgga ccgatgtcaa      1620
     acgttacgcc cagcggaaac aggtatgttc tgaacctagt tgatgatttc agtagattta      1680
     ccgttacgta cctgctgaaa aataagtggg aggcggcgga gtctattaag gcatatgtgc      1740
     gatgggtaga caaccatttc gggaggaagc cacgcgttat tcggtccgat ggcggtggcg      1800
     agtttaacaa caaggagttg cggaagtttt atcaggcgga agggatacag ccacagttca      1860
     gcacaccgta ttccccccag cagaatggtg tggctgagcg gaagaatagg agtctttccg      1920
     aaatggccac ctgtctgctg ctcgatgcgg gactagagaa acgtttttgg ggagaagcga      1980
     tacgtactgc cacgtatctg caaaatagat tgccatccag atcagtgaag cagacgccgt      2040
     atgaattgtg gtgggggcgt aaaccagact tgggacactt gcgtgttttt ggcagcgagg      2100
     cttacgttca cgtgccgtct gtgaagagga ccaagatgga tagcaaggcg aggaagctga      2160
     cctttgtagg ctactcaatg gaacacaaag gataccgttt cttggaccgt gaaaccgacc      2220
     aaatcaccat cagtcgcgat gcaaggttca tcgagttgaa gaatgggagt tcgtcggtgg      2280
     aggtgccgat tgcggcgcca gcttcaggtg aaaagaagaa atccaatggc aagaatcgag      2340
     gcgaccaacg tgaagatgaa gaagacatcc agctgctacc gcttatagag aagaaggaag      2400
     aagatcgagc gagcagtaat ggagaatttg aagatgcaga agaaggcgaa tcacccgtag      2460
     tgcgccgggg agttcggtcg acgagaggag ttatgccgaa gcactatgaa gatttcattg      2520
     tggatttcgc agcctgtgca acggaggagc caaaggacta ccgagaagcg atgaagacaa      2580
     acgagtggcg tagtgccatg gaggacgaat tggcatctca cgccaagaat gggacctggg      2640
     agctcgtgcc attaccacca aacaagaagg tagttggttc gaggtgggtc tttaaggtca      2700
     aacgtgatga gaacaacaag attgtgaagc acaaggctag ggtggtagcg cagggctaca      2760
     cccaatcgtt cggcgaagat ttcgatcagg tgttcgctcc tgttgtgagc catgcaacgt      2820
     tccgaacctt tctggtgata gccgctaaaa ggaagcttgt tgttcgacat ttggacgtca      2880
     aaacggcgta cctttacgga tcattggagg aagaggtatt tatgcgtcag cctccaggat      2940
     acagagctgc aggtcaggag gagctggtct gtcggctcaa gcgaagcata tatggattac      3000
     gccagtcggc aaggtgctgg aacaggagat tgaatgcagc tttggtgaag cgaggatttg      3060
     ttcaatcgaa agcggatcct tgtttatacg tacggaacaa taacggagtc aaaacgtacc      3120
     tgttagtgta cgttgatgat ttccttcttg gatcgtctag cgaggaggag attcgtcgga      3180
     tttgtgaaag ccttagcgaa gagttcgaga ttacctgcct aggaggagtc cgtcatttct      3240
     tgggcatgga aattcagcta gaggaaggtg tctaccaaat cagcctttca aactacattg      3300
     ataatctgat cgggaagcac ggaatgcaag aagcaaagac ggcgaaatca ccgatggaca      3360
     ttggttaccc gaagcaaaca gaagaagatg gactgttcga agatacgacc aaatatcgca      3420
     gcctagttgg aggattgtta tacctggccg tgatcgctcg gccggatatt gctgcttgta      3480
     ctgccatctt gggacgaaaa gtgagtgcac catgtgagtc ggattggtcg gccgcaaaga      3540
     gggtcttgag atacctcaag gggacgaaga actataagct acgacttgga ggagacctcg      3600
     accaaccact agccggttat tcggatgccg attgggccgg cgacatggag agcagacgtt      3660
     caacaaccgg atacgtcata tcgttcggcg gaggagtcgt gtcgtgggca agccgccgac      3720
     aaaacgcagt tacgctatca agcatggaag ctgagtatgt cgctttgagc gaaacatgcc      3780
     tggagacgtt gtggatgagg aagctactta gtgacttcga tgaagcccag gatactccga      3840
     ctgtcatcaa agaggataac cagggctgct tggcgtttgt gaaaacagaa cgatcgagcc      3900
     gccgttctaa gcacatagat accaaggagc ggttcattcg ggagctatgc gataagaacg      3960
     agattgtcct ggagtactgt tctacggttg atatgctggc agatcttcta acaaagcctc      4020
     tgggaccatt gaagcatcag aagttctgca acatgctagg gttccggatg aagacgtgaa      4080
     aaggctgctc atcgaggagg ag                                               4102
//
ID   Copia-38_AA-LTR repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-38_AA_;
KW   Copia-38_AA-I; Copia-38_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-271
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 962-962 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 271 BP; 66 A; 70 C; 50 G; 85 T; 0 other;
     tgtaggtatt cgatgatcac ctctccacta tacacacacc ttggttcgcc cctggtgttg        60
     ccatacctga cacatcgcct catattgagc gcgggaacat agaggaaaag ttcattccaa       120
     accaaacttt caacgaagca agttcgtgcg tgttatttcc tttctttcaa taaaagtaca       180
     gttactaaag taatctcgcg tgtgcaaatt ctttctgtac cgaattcctt acgctgttat       240
     ccactgtgtg gtttgctctg tccgctcgtc a                                      271
//
ID   Copia-38_CQ-I repbase;    DNA;    INV; 4348 BP.
XX
AC   AAWU01006555;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-38_CQ_;
KW   Copia-38_CQ-LTR; Copia-38_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4348
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 379-379 (2011).
XX
DR   GenBank; AAWU01006555; Positions   22496   26843.
XX
CC   Positions [1481-2017] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..4330
FT                 /product="Copia-38_CQ-I_1p"
FT                 /translation="MPNGDGSGAGAQGAVQPEARGQNYGAGGHPPIERLVG
FT                 RDNWRTWRFAVRTYLEIEDLWDVIEPAQGAADAKKDRIARGKIIFFLDPSI
FT                 FHHAENAKTAKELWTKLCGLYEDTGLTRQWALLHKLITTNLASSGSMEAYV
FT                 NRMTTTANQLIGIGFPLDEKWIGMMLLAGLPLDYRPMVMGLENSGIAITGD
FT                 AIKTKLLQEDDLPVEPAGGQAYVSKGRHKDNKQGKPQPSAAPSKSKGSKCH
FT                 RCGKAGHFARDCTAKELVRNDRDGKKKAFCAVLSVLDSDDANDWYFDSGAV
FT                 KHLTRNEALLENPRTTSGSIIAANNQAMKIVAEGTMTLQPTCYDDTIEVEN
FT                 VELVPELAVNLLSVGKIVDQGHTVVFNKDGCEVIDADNSVFATGSRSNGLF
FT                 KLDQIKPRALACSSRETAELWHKRLGHMCMKNLIKLKNGLVNGIKFEGNEC
FT                 GRGCIVCAEGKQTRLPFSHAGTRAAGILDLVHSDICGPMEEKSLGGCRYYL
FT                 SFTDDKTRKIFVYFLRTKSKEEVLQCFKDFHVTAERQTGRKLKVIRTDNGL
FT                 EYTNRLFQDYLSGMGIRHQTTVEYTPEQNGLGERVNRTAVERARCMLFEAY
FT                 LPKPFWAEAVAAAIYLINRSPTKGIEMTPEEAWSGRKPDLSHVRVFGTIAM
FT                 AHVPKQKRRKWDKKAVECILTGYEEDTKAYRLYDKKTRSIINSRDVTFVSE
FT                 GVVKRGVTAEPRASGPERTCVRLDFWEYVPADAVQEVVPPEAAEPQKEPDE
FT                 EPEDAFESAESSDDDVSFAEDDPLPALPPQSSSEPPKEGLRLSGRERFLPG
FT                 KYKDFKLGNKGLPVTKFADKTTTMTNAAARPEDPAAAPPSCSYQRSVADDG
FT                 QQRLMLCDRGRPPQGKYSDNPDESPDTGIDTPQPLLDDPFTHQQALARDDA
FT                 EHWKQAMKDEYEALISNGTWELCDLPEGRSAIKCKWVYKTKLDVNGDIDRY
FT                 KARLVIKGYSQRKGVDYEETYAPVVRYSSLRYLFALAARLDMKVDQMDAIT
FT                 AFLQGELSEEIYMEQPPCFVDGKKRSKVCRLKKALYGLKQSSRVWNKKLDA
FT                 ALRKFDLVCTDYDPCVYTKVRGDKMLFVAVYVDDVLIYSNCDRWKTEIKAQ
FT                 LSREFKMKDIGPAKYVLGIRVSRSKDEIALDQEKYVEAILSRFQMTDCKPV
FT                 STPMNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLAQSTRPDICYA
FT                 VNILSRFNSNPGEKHWCGVKHLFRYLRGTSKYRLTYKKGGVSKIEGFSDAD
FT                 WAADLEDRKSITGYVFTAQGGAVSWSCKRQQTVALSTCKAEYMALSVAVQE
FT                 ALWWRRLRGRIESEEAITIHCDNQSAIAVARNGGYHPRTKHIDIRHHFIRD
FT                 ALEKGEVVVDYVRSEEQTADGLTKPLCRTKMEICRYQLGLQHP"
XX
SQ   Sequence 4348 BP; 1088 A; 1106 C; 1349 G; 805 T; 0 other;
     agaggttatg ggcccatagt gggttccgga acgctgaaga acttgaaaaa tctacctcaa        60
     gaagtttaac tttcaactga agcttatgaa gaagtaggaa aatctagaga agatgcctaa       120
     cggagacgga agcggtgctg gtgctcaagg tgctgtccaa cctgaggctc gtggccagaa       180
     ctatggagcc gggggccatc cgccaatcga gcggctggtc ggacgtgaca actggcggac       240
     gtggaggttc gcagttcgca cgtacctgga gatagaggac ctgtgggacg tgattgaacc       300
     agctcaaggc gcggccgacg cgaagaagga ccggatcgct cgaggaaaaa ttattttctt       360
     cctcgatccg tcgattttcc accacgcgga gaacgcgaag actgccaagg agttgtggac       420
     gaagctgtgc ggcctgtacg aggacactgg actaacccgt cagtgggcgc tcctgcacaa       480
     gctcatcacg acgaacctgg cgagcagtgg gtccatggaa gcgtacgtga accggatgac       540
     gactacagcg aatcagctca tcggaatcgg cttcccgctg gacgagaaat ggatcggcat       600
     gatgctgctg gcgggactac cgctggacta tcgtccgatg gtcatggggc tcgagaattc       660
     cgggatcgca atcactggtg acgccatcaa aaccaaattg ctccaggaag acgacctgcc       720
     cgttgaacca gctggaggac aagcgtacgt gtccaaggga cgccacaagg acaacaagca       780
     gggtaagcct caaccgagtg ctgctccaag caaatcgaag ggatcgaagt gtcaccgctg       840
     cggcaaagct ggccatttcg ccagggactg cacagccaag gaactagtgc gcaacgaccg       900
     cgacggcaag aagaaagctt tctgtgccgt gctctcggtg ctggattcgg acgacgccaa       960
     cgattggtac ttcgattcgg gagctgtgaa gcacttgacc aggaacgagg cgctgctgga      1020
     gaacccccga acgacgtctg gaagcataat tgcggcgaac aaccaggcga tgaagatcgt      1080
     tgcagaggga actatgacgt tgcagccgac gtgctacgac gacaccatcg aggtcgagaa      1140
     cgttgaactg gtaccggagt tggcggtcaa tctactctcc gtcgggaaga tcgtggatca      1200
     aggccatacc gtcgtgttca acaaagatgg atgtgaggtg atcgatgcag acaacagtgt      1260
     cttcgcaact gggagcagat cgaacgggct gttcaagttg gaccagatca agccgagagc      1320
     gctggcgtgc tcttcccgcg aaactgctga gctatggcac aagcgtttgg gacacatgtg      1380
     catgaagaac ctgatcaagt tgaagaacgg tctcgtcaac ggaatcaagt tcgaaggcaa      1440
     cgagtgtggc agaggctgca ttgtctgtgc agaaggtaag caaacgcgat tgccattcag      1500
     ccacgcaggg acccgtgcgg ctggaatcct ggacctggtg cactccgata tctgcggccc      1560
     gatggaagag aagtcgttgg gtggctgtcg ctactatctc agcttcaccg acgacaagac      1620
     gcgcaagatt ttcgtttatt ttctgcgaac caagtccaaa gaagaggttc tgcagtgctt      1680
     caaggatttc cacgtgactg ctgagcggca aacgggccgc aaactgaagg tgattcggac      1740
     ggacaacggc ctggagtaca cgaatcggct gttccaggac tacctgtcgg ggatggggat      1800
     ccgtcaccaa accaccgtgg agtacacccc tgagcagaac ggactcggag aaagggtcaa      1860
     ccggactgcc gtggaacgcg ctcgatgcat gctgttcgaa gcttatctgc caaaaccgtt      1920
     ttgggcagag gctgtggctg ctgcgatcta cctgatcaac aggtcgccga cgaagggcat      1980
     cgagatgact ccggaggaag cgtggtcagg tcgcaagccg gacttgtcac acgtacgagt      2040
     gttcggcacg atcgcgatgg cccacgtacc gaagcagaag cgtcgcaagt gggacaagaa      2100
     agccgtggaa tgtatcctca ccggctacga agaggacacc aaggcgtacc gcttgtacga      2160
     caagaagacg aggtcgatca tcaacagccg agacgtgacg ttcgtgtcgg aaggagtggt      2220
     caaacgtgga gtgaccgctg aaccgagggc tagtggaccg gagcggacat gtgtgcggct      2280
     ggacttttgg gagtacgtgc cagcggatgc cgttcaagag gttgttccac cggaagccgc      2340
     ggaaccacaa aaggagcctg acgaagaacc tgaagatgca ttcgagtcgg ccgagagcag      2400
     cgacgacgac gtgtcctttg ctgaagatga cccgttaccc gcgctcccgc cacaatcatc      2460
     ttcagaacca cccaaagagg ggttgaggct cagtggtagg gagcgctttc ttccaggcaa      2520
     gtataaagat tttaaacttg ggaacaaagg cctacccgtg acgaaatttg cagataagac      2580
     gacgacgatg accaacgcag ccgcgaggcc cgaggatcct gccgctgcgc ccccgtcgtg      2640
     ctcttatcaa agatcagttg ccgatgacgg tcaacaacga ttgatgcttt gcgatagggg      2700
     gcgcccgccc caaggcaagt attctgacaa ccctgatgaa tcacccgata ctggtatcga      2760
     cactccacag ccgcttctgg atgatccgtt tacgcatcaa caagccctgg ctcgggacga      2820
     cgctgaacac tggaaacagg ccatgaagga tgagtacgaa gccctcatct cgaacggaac      2880
     gtgggagctg tgcgatctac cggaaggacg ttcggcgatc aagtgcaagt gggtgtacaa      2940
     gaccaagctg gacgtgaacg gggacatcga ccggtacaaa gcgaggctgg tcatcaaagg      3000
     atactcgcag cgaaaggggg tagattacga agagacctac gccccggtcg ttcgctatag      3060
     ttcgctgcga tatctcttcg cgctggctgc ccgtctggac atgaaggtcg accagatgga      3120
     cgcaattacg gctttcctgc aaggagaact gtcggaggag atctacatgg agcaaccccc      3180
     ttgcttcgtg gacggcaaga agcggtccaa ggtctgccga ctcaagaagg cgctgtacgg      3240
     gctgaagcaa tccagtcgtg tctggaacaa gaagctggat gctgccctga ggaagttcga      3300
     cctggtatgc accgattacg acccgtgtgt gtacaccaag gtgcgcggcg acaagatgct      3360
     gttcgtcgct gtgtacgtgg atgatgtcct gatttactcg aactgtgacc gctggaagac      3420
     ggagatcaag gcccaactca gccgcgagtt caagatgaag gacatcggac ctgcgaagta      3480
     cgttctgggg atccgggtga gccggagcaa ggacgagatt gccctggatc aggagaagta      3540
     cgtggaagcg atcctgagtc ggttccagat gacggactgc aagcccgtca gtacgcccat      3600
     gaacgtgagc gagaagttga cgcgcgacgc gtgcccatcg actgatcaag agaaggagag      3660
     gatgaagtcc gtgccgtacc aagaagccgt tgggtgcttg atgtacttgg cccagagcac      3720
     cagaccggac atctgctacg ctgtcaacat actcagccgc ttcaactcga acccaggtga      3780
     gaagcactgg tgtggtgtga agcatctgtt ccgctacctg cgcgggacct cgaagtatcg      3840
     tctgacctac aagaaaggag gagtttcaaa gatcgaaggt ttttcggacg ctgactgggc      3900
     tgctgatctg gaggaccgga agtcgatcac ggggtacgtg ttcaccgccc aaggtggagc      3960
     cgtgtcctgg agctgcaaga ggcaacaaac cgttgcactc tcgacctgca aggccgaata      4020
     catggcgttg tcggttgcgg tgcaggaggc gctctggtgg cgccggttgc ggggacgtat      4080
     cgagtcggag gaggcgatta cgatccactg cgacaaccaa agtgcgatcg cggtcgcacg      4140
     gaacggtggc tatcatccga ggacgaagca catcgacata cgacaccatt tcatccggga      4200
     cgcgctggag aaaggcgagg ttgtcgtgga ctacgttcgg agcgaggaac aaacagcgga      4260
     tggtctaacc aaaccgctgt gccgtacgaa gatggagatc tgcagatatc aacttggtct      4320
     gcagcatccc taggttgagg aggagtgt                                         4348
//
ID   Copia-38_CQ-LTR repbase;    DNA;    INV; 125 BP.
XX
AC   AAWU01006555;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-38_CQ_;
KW   Copia-38_CQ-I; Copia-38_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-125
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 380-380 (2011).
XX
DR   GenBank; AAWU01006555; Positions   22371   22495.
XX
SQ   Sequence 125 BP; 31 A; 30 C; 21 G; 43 T; 0 other;
     tggagatgat caagcaacct atggatttgt acttgtttgt tagttacctg gcagctcaat        60
     aaaacttttc attctgttct aaaccgtaac ccacgctaga cgtgttttat ttcacctctg       120
     cccca                                                                   125
//
ID   Copia-39_AA-I repbase;    DNA;    INV; 4066 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-39_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4066
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4066
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 86-86 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..4057
FT                 /product="Copia-39_AA-I_1p"
FT                 /translation="MANSNFGIEPLVGRENWTTWKFAVKTYLQVEDLWQAV
FT                 EPNKKADGTLEAVDPVKDLKAKGKIVLFLKPENYYHVREAKTAREAWTKLN
FT                 DAFEETGLTREVALLYKLIRTDLESCGTMEAYANKMISTCHQLNEIGFPIP
FT                 ERFVGVLLLAGLPERYQPMVMALKNSGAAITGDSVKTILLQEESMPSEKTA
FT                 FVAKGKFKPRPEVFHSNVKNKKNSSQSKGPQCRKCSKFGHIAKFCPDNQAN
FT                 KKADAFCTVLSTIQGQGKNQWYLDSGATRHMTRDLELLQDVRRENGIVVAA
FT                 NKETMKIEACGTATLHPVCQDSDDGISVHDVQYIPDLSTNLLSVVEIVKKG
FT                 YKVVFQSSGCEIFNMEGKLVATGIIENDLFKLAQSEAAGKVMLSSACASLE
FT                 TWHKRMGHLNYNSVKKLADGVACGMRISNENHGDCTVCPMGKQTRIPFSKS
FT                 GSRAEELLEVIHSDVAGPMEVPSPSGSRYYVSFIDDRSRRMFVYFLKTKSE
FT                 EEILARFKEFHAQAERQSSRKIKILRTDNGKEYMNKGFQSFLRQMGIRHQT
FT                 TNDYTPEQNGLAERANRTIAERARCMLFEANLPKSFWAEATAAAVYLVNRS
FT                 PTRGHGLTPEEVWSGRKPDISHVRVFGTKAMVQVPKQKRRKWDPKSRPCVL
FT                 TGFEEETKGYRLYDPNTKCFLKSREVCFIDECTSKCALPTRQPRTVIPVDF
FT                 ESVPTTVSSDPLVPEVEEAVHESDEEVTEDEDISNTSTDTVVDVTELPSRH
FT                 FSNLPRRSERKRTVPKKYLDFHLASKSLPVSINSQDRPDQESDESSDFEGF
FT                 NNEGSDLDPDQCLALNSNRGKTANDGNNDPKNYREAMASPYAENWREAMAE
FT                 EMESIHTNKTWTLVDLPPGRKAVGSKWVYKIKRHINGEIVRFKARLVAQGY
FT                 SQQYGADYDEVFAPVGQQTTFRTLMAVAAKKNMTVKQYDIKTAFLYGELEE
FT                 EIYMRQPCGFEQKGSENKVCRLRRSLYGLKQAARAWNQRLHEELERQQFQR
FT                 CLSDPCLYRKQLKDRWCYVLVYVDDLVVVSEDPKMIEALVINLKKSFHISE
FT                 LGDIRYYLGMEVEKDRHGDYFLSQRKYIREVIETSGLIDAKVSKTPLDPGY
FT                 VKNVSDGTPLASNSEYQKLIGKVLYIAVNTRPDISTAVSILSRKTNRPTQE
FT                 DWNELKRVVRYLKGTINYRLRLSKKGETGTIIGYSDADWAENRDDRKSHSG
FT                 FAFKVNGGTVSWACRKQTCVALSTAEAEFIALAEAAQEAVWLKLLLQELND
FT                 GQRVVINEDNQSCLKIIEGEKLKRKMKHIATKFHFTKDLIQKQEMECVYCP
FT                 SEDMVADLLTKPLQRVRLEKLVKMIGLAIAV"
XX
SQ   Sequence 4066 BP; 1241 A; 825 C; 1103 G; 894 T; 3 other;
     ggttataggc ccagagtaac ggttagaaat ggcgaattcg aacttcggaa tcgagccatt        60
     ggtcggcaga gaaaattgga caacttggaa atttgccgtc aaaacttatc tccaagtgga       120
     agacctgtgg caagccgttg aaccaaataa gaaagcggat ggaacgttgg aagcggttga       180
     ccctgtgaag gatctgaagg caaaagggaa gattgttctg ttcttaaaac cggagaatta       240
     ttaccatgtc cgtgaagcca agacagctcg ggaagcttgg acgaagctca acgacgcgtt       300
     cgaggaaact ggcctgacgc gagaagttgc tctgctttac aagctcattc ggaccgatct       360
     ggaatcttgc ggaactatgg aagcctacgc caacaagatg atttcaacgt gccatcaatt       420
     gaacgagatt ggatttccga tcccggaacg tttcgtaggg gttcttctgc tggctggcct       480
     acccgagagg tatcaaccaa tggtgatggc tctaaagaac tcgggagcgg ctataactgg       540
     agattccgtc aagacgattt tactgcaaga agaatcaatg ccaagtgaaa aaacggcgtt       600
     cgtagcgaag ggaaaattca agccgaggcc ggaagttttc catagtaacg tgaaaaacaa       660
     gaaaaattcg tcgcagtcca agggtccaca gtgtcggaag tgcagcaagt tcggccacat       720
     agcgaagttt tgtccggata atcaagccaa taagaaagca gatgccttct gcactgtttt       780
     gtcgacgatt caaggtcagg gcaagaacca gtggtatttg gactcaggtg caaccagaca       840
     catgacccga gacctggagt tgctgcaaga cgtgcgtcgt gaaaacggaa tcgttgtagc       900
     tgcgaacaag gaaacgatga aaatcgaagc gtgtggtact gctacccttc atccagtatg       960
     tcaggatagt gacgatggaa tttcagttca tgacgtgcag tacattccgg atctgtccac      1020
     aaaccttctg tcggtggttg agattgtcaa aaaaggctac aaggtggtgt tccaatcgag      1080
     cggatgtgaa atcttcaaca tggaaggtaa gctagtggca accggaataa tcgagaatga      1140
     cttgttcaag ctggcgcagt cggaagcagc tggtaaagta atgttgagct ccgcttgtgc      1200
     atcgctagaa acttggcata agcggatggg gcatctcaac tacaacagtg tgaagaaact      1260
     ggctgacggt gtggcgtgtg gaatgcgaat ttcaaatgag aaccatggcg attgtaccgt      1320
     gtgtccaatg gggaagcaga cacgaattcc attcagcaag agcggatcaa gagcagaaga      1380
     gctactagaa gtgatccatt cggacgtagc gggaccaatg gaggtaccat caccgtcagg      1440
     aagccgttat tatgtgtcct ttattgatga tcgatcccgc cggatgttcg tgtatttttt      1500
     gaagaccaaa tctgaagaag agatccttgc tcggttcaag gaattccacg ctcaggcgga      1560
     gcgtcagagc agtcggaaga tcaagatctt gaggacagat aatggtaagg agtatatgaa      1620
     taaaggattt caaagcttct tgagacagat gggaatacga catcaaacca ccaacgatta      1680
     tacmccggaa caaaatggtc tggcggagcg tgcaaatagg acgattgctg agcgggcacg      1740
     ctgtatgtta tttgaagcta accttccaaa atcgttctgg gcggaggcaa cggcagcggc      1800
     ggtgtacctc gttaaccgct ctcccactcg cggtcatgga ttgactccag aagaggtctg      1860
     gagcggaagg aagcccgata tctcccatgt cagggtattt ggaacgaagg ctatggtgca      1920
     agtgcccaaa caaaagcgac ggaagtggga tccgaaatca agaccktgtg tattgaccgg      1980
     atttgaggag gagacgaaag gctaccgttt atacgatcca aatacgaagt gcttcctgaa      2040
     gagtcgagaa gtgtgtttca tcgacgagtg cacaagtaag tgtgctctac caaccagaca      2100
     gccacgaacg gtgattccag tggacttcga aagcgttcca accacagttt caagtgatcc      2160
     tttagttcca gaagttgagg aagctgtgca cgaatccgac gaagaggtca ctgaagatga      2220
     agacatcagc aatacctcta cagacaccgt agttgacgtg acagaactcc catcgcgaca      2280
     tttttcaaat ctaccccggc ggagcgaaag aaagcgtaca gttccgaaga agtacttgga      2340
     ttttcatcta gcaagcaaga gtcttcccgt aagtattaat tcccaggaca gaccagatca      2400
     agagtcagac gaatcaagtg acttcgaagg cttcaataat gaaggcagcg atctcgatcc      2460
     tgaccagtgc ttggctttga actccaatcg tgggaaaaca gcaaatgatg ggaacaatga      2520
     tccgaaaaat tacagggagg cgatggcttc gccttacgcc gaaaactgga gagaagcgat      2580
     ggctgaagaa atggagtcga ttcacaccaa taaaacatgg acattggttg atctccctcc      2640
     aggacggaag gctgttggaa gcaagtgggt gtacaaaatc aagcgacaca tcaacggtga      2700
     gattgtacga ttcaaggccc gcttagttgc ccaaggatat agtcaacaat acggagcaga      2760
     ctacgacgaa gtatttgctc cagtgggaca gcaaaccact tttcggacgc taatggcagt      2820
     cgctgcgaag aaaaacatga ctgtgaagca atatgatatc aagaccgcat ttctgtatgg      2880
     cgaacttgag gaggagatat atatgcggca gccatgtgga tttgaacaga agggaagcga      2940
     aaacaaggtg tgtcggttac gtcggagctt gtatggtctg aagcaagcgg ctagagcgtg      3000
     gaatcagaga ctacacgaag aactagaacg gcagcaattt cagcgatgtc tgtccgatcc      3060
     gtgcttgtac cggaagcagc tcaaagaccg atggtgttac gtgcttgtat atgttgacga      3120
     cctggttgtg gtgagcgaag atccgaagat gatcgaagcg cttgtcataa acctgaagaa      3180
     atcatttcac atcagcgaac tgggtgatat ccgatattac cttggaatgg aagtcgaaaa      3240
     ggatcgtcat ggtgattact tcttgagtca gcgaaagtac attcgagagg tgatcgaaac      3300
     aagcggtttg atagatgcca aagtttcgaa gactcccttg gatcccggat atgtcaagaa      3360
     cgtwagcgac ggaacccctt tagcaagcaa cagcgaatat cagaagttaa tcgggaaagt      3420
     tttgtacata gctgtgaaca ctaggcccga catttcgaca gctgtatcca tcctgagcag      3480
     gaaaacaaat cgtccaacgc aagaggattg gaatgagctt aaacgtgtag tacggtatct      3540
     gaaggggaca atcaactatc gacttcgact gagcaaaaaa ggggagaccg ggaccatcat      3600
     cggttattcg gatgcagact gggcagaaaa tcgagatgac cggaaatcgc atagtgggtt      3660
     cgcgttcaag gtgaatggag gaacggtaag ctgggcatgc cgcaaacaaa cttgtgtagc      3720
     tttatcaaca gcggaggcag agtttatcgc attagctgag gcggcacagg aagctgtatg      3780
     gttgaaactc ctactgcaag agctgaatga tggacagcga gtagtcatta atgaagataa      3840
     ccaaagttgt ctgaaaatta tagaaggaga gaaactaaag aggaaaatga agcacattgc      3900
     aacaaagttc cactttacaa aagatcttat tcaaaaacaa gaaatggagt gtgtctactg      3960
     cccatctgaa gacatggtag cggatttatt gacaaaacca ttgcagcgcg ttagattgga      4020
     gaaattggtc aagatgatag gactggctat tgccgtttag gaggag                     4066
//
ID   Copia-39_AA-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-39_AA_;
KW   Copia-39_AA-I; Copia-39_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-142
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 963-963 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 142 BP; 40 A; 22 C; 29 G; 51 T; 0 other;
     tgttgtagtg gaaacggaaa tggtcagagt aggctgctaa tgtttaatgt cagtaatttg        60
     attaggaaat atacctcatt catgtttgtt cgttcattct aaccagacgt gttttaatca       120
     ctgctagtca ctctttacaa ga                                                142
//
ID   Copia-3_AA-I repbase;    DNA;    INV; 4069 BP.
XX
AC   supercont1.3;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_AA_;
KW   Copia-3_AA-LTR; Copia-3_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4069
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.3; Positions 2026476 2030544.
XX
CC   'GTATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           721..4059
FT                 /product="Copia-3_AA-I_1p"
FT                 /translation="MKKKNPIKCHYCGNPGHKQKECRKFARDSEKQPKQQE
FT                 KGTSKKEKVSFALAAGGTTDTEAIKLWVVDSGATWHTVADRKFFRELRESE
FT                 VKFVTLADGKQAEVHGEGCCVVECVDEHGNRREMDISFALYAPTLSMNLLS
FT                 VPALVQKQATVVFDSAGCRILRGEATVGVARLKQGIYQIKQPENVVMVAGS
FT                 HHNKDCQHVWHRHRDPKAIDHLLKAQLVDGITLRRCSIDEKCECCLQGKTP
FT                 RTPFPSESQSKSNAPMDLVHTDVCGPVEVPSVSGYRYFMTVIDDHSRFCVL
FT                 YLLKEKSEVATKIEEYVAYVKTLFGRKPKAIRSDQGGEYSGKRLRAFYKRE
FT                 GISAQYTAGYRPQQNGIAERKNRSLVEMVRCMLFDAHLEQRYWAEALTTAV
FT                 HLQNVLPKKPLDVTPYELWTGVKPKVDHFKIFGCSAWIHIPKVKRKKLDAT
FT                 ARKLTFVGYSSEHKAYRFLDKATRKVYVSRDAKCIEEDVKIDPTDAATEGK
FT                 NVDEVFFDTGRLQNHPVVPVAQPEVEPEANTGAQHQIEIEARPEADEAEGY
FT                 DTAIEDTTQTDTDFEGFSDTESPHFGEPRRSARPTQRFRDVTGVTKHVSDE
FT                 PQSYSDAVEGPEASVWQAAMQEEIEAFQETGTWELVPLRPGRKPVGCKWTY
FT                 KKKEDESGQVVWCKARLVAQGFSQKFGQDYDEVFAPVVRQTTLRTILVLAS
FT                 QEHKLVKHLDIKSAYLHADLEEEVYMKQPPGFDQKDGMVCRLKRCIYGLKQ
FT                 SARAWNRKIDGVLKAMGFKPADSDMCLYIRNRNGKLSYILMYVDDLLVVCN
FT                 SEAEFDEIRRLLQDKFKLSCLGELKQFLGIRVEKAGDHYTLDQASYIDKLI
FT                 RRFEHDEAKPSKVPIDPAYLKQKEETELPTNASYRSLVGSLLYVAVNTRPD
FT                 ICVAVSLLGRKVTNPTNRDWTEAKRVLRYHKATKNHRLHLGSGSGETECFV
FT                 DADWAGDEGDRKSHSGFLLKFGGGLVDWGTRKQSCVALSSTEAEFVALADG
FT                 CQQLMWYRKLLNDLKQSSPKPIIIWEDNQSCIKIVESERLERRSKHIDTKY
FT                 AYTKDLQQQRVIELGYMPTERMEADLMTKPLERIKLERHRNAIGVKEPSEM
FT                 SICQR"
XX
SQ   Sequence 4069 BP; 1099 A; 1044 C; 1152 G; 774 T; 0 other;
     ggttatgggc cgctcggcga aaaagtggtg acgccatttg taaaaataaa gatttttcga        60
     tagttcgcgg taaaaccgga agaaaatcga agtagtcgcg agtttttcgg tcggttttcg       120
     cgagtgtcat ggaaggaaat cgattttcct tgcaaaagct gggtaacagc aattacccga       180
     cgtggcgctt caaggtcgag ctactgcttg ttcgagagga gctctgacgc tacgtggatc       240
     cgggagtgaa gcccgatgag gaagccgatg cgacgtggaa tgcgggcgac gccaaggcga       300
     gggccaccat cggcctgtta attgaagaca atcagcacgg actgattcgc gcggcacgga       360
     cagccaaaga cacgtggacg gcgctgcaaa atcaccatca gaagacgagt ttgacgtcga       420
     aagtgtcgct actcaaacaa atttgcgaca agcgctttgc cgacggtgat gacatggcgg       480
     agcatttatt cgagatggag gaattgtttt ctcgtttggc aaacgccgga caggaactcg       540
     gggagaacct cactgtcgcg atgattttga gaagcctcgt tcgacaccct cacaaccgcc       600
     ctcaaaagcc ggtcagatga tgacctaaca ctggagctgg tcaagaggaa gctcctcgac       660
     gaggcagcaa agcgacaggg tgctggatca agctcggcgc tgcgggtcgg ccatggcagc       720
     atgaagaaga agaatccgat caagtgccac tattgcggaa atccgggaca caaacaaaag       780
     gaatgccgta agtttgcccg tgattcagaa aagcaaccga aacagcagga aaaaggcacc       840
     agcaagaagg aaaaagtttc gttcgcgctg gctgcaggag gaacaacgga caccgaagcc       900
     atcaagctgt gggtcgtgga ttcaggtgcc acttggcaca ccgtggcgga tcgaaagttc       960
     ttccgggaat tgcgtgaaag tgaggttaag ttcgtcacac tggcggacgg aaaacaagcg      1020
     gaggtgcacg gcgaaggttg ctgcgtcgtc gaatgtgtcg acgagcatgg gaatcgtcgt      1080
     gaaatggaca tcagctttgc gctctatgct cccaccctct cgatgaacct gctttccgtt      1140
     ccagctctcg tccaaaagca agctacagtt gttttcgact cggcaggatg ccgaattctc      1200
     cgtggagaag ccaccgtggg cgtggcacgt ttgaagcaag gtatctatca aatcaagcaa      1260
     ccggaaaacg tggtgatggt ggcaggcagc caccacaaca aggattgcca gcacgtttgg      1320
     catcgccacc gggacccgaa agcgatcgac catttgctga aagcccaact ggtggatgga      1380
     attacactcc gccggtgcag catcgacgag aaatgtgaat gctgtttgca aggtaagaca      1440
     ccacgaactc ctttccctag tgagtctcaa tccaagtcaa atgcaccaat ggacctggtg      1500
     catacggacg tttgcggtcc ggtcgaggtg ccgtcggtta gcggttatcg gtactttatg      1560
     accgttatcg atgaccacag ccgattttgc gtcctctacc tactaaaaga gaaatccgag      1620
     gtcgcaacga aaatcgagga gtacgtcgcc tacgtcaaaa cacttttcgg tcggaaaccg      1680
     aaagcaatcc gctctgatca gggcggcgag tacagcggaa agcggctgcg agcgttctac      1740
     aagcgggaag gaatatcggc gcaatacacg gctggttata gaccccagca aaacggcatc      1800
     gcagagcgga aaaaccgttc gctcgtggaa atggtgcggt gcatgctctt cgatgcacac      1860
     ctggagcaac gctattgggc agaagcactg accacggcag ttcacctcca gaacgttctg      1920
     ccaaagaagc ctctcgacgt cactccatac gagctttgga ccggcgtgaa accgaaggtc      1980
     gaccacttca agattttcgg ctgcagtgct tggatccata tcccgaaagt aaaaaggaag      2040
     aagctggacg ccaccgcacg aaagttgacg ttcgtgggtt actcctcgga gcataaagct      2100
     taccgcttct tggacaaagc cacacgaaaa gtctacgtga gccgggacgc caaatgcatc      2160
     gaggaagacg tgaagataga cccgacggat gcggccactg aaggtaagaa tgtcgacgaa      2220
     gttttctttg atacaggtcg tctacaaaac catcccgtcg taccggttgc tcaaccggaa      2280
     gtcgaaccgg aagccaacac cggtgctcaa caccagatcg agatcgaagc acggcccgaa      2340
     gcagacgaag ctgaaggcta cgatacagcg attgaagata cgactcaaac agacaccgat      2400
     tttgagggat tcagcgacac ggagtcgcca cacttcggcg aaccgagaag gtctgcgcgt      2460
     ccaactcaac ggttccgtga cgttaccggc gttacgaaac acgtcagcga tgagccgcaa      2520
     agttactccg acgcggtcga aggtcctgaa gcgtcggttt ggcaggcagc gatgcaggag      2580
     gagatagaag ccttccagga aaccggtact tgggagctcg tccctctacg ccccggacgc      2640
     aaaccggtag gatgcaaatg gacctacaag aagaaggaag acgagtccgg gcaggtagta      2700
     tggtgcaagg cgagactagt cgcccagggt ttttctcaaa aattcggcca agactacgac      2760
     gaggttttcg cccccgtcgt gcgtcaaacg accctgcgga ccatcctcgt actcgccagc      2820
     caggaacaca aattagtcaa gcacttggac ataaaaagcg cgtacctaca cgccgatttg      2880
     gaggaggagg tgtacatgaa gcaacctccc ggcttcgatc aaaaggatgg aatggtatgc      2940
     cgcctcaaac gatgtattta tgggctgaaa cagtccgctc gagcttggaa caggaaaatc      3000
     gacggagtat tgaaggccat gggattcaag cctgcggaca gtgacatgtg cttgtacatc      3060
     cgaaatcgca acgggaagct gagctacatc ctgatgtacg tcgacgactt gctcgtcgtt      3120
     tgcaactccg aggccgagtt cgacgagatt cgtcggctgc tgcaggacaa attcaagctt      3180
     tcctgcctcg gtgagctcaa gcagttcttg ggaatacgcg tcgagaaggc tggtgatcac      3240
     tacacacttg accaggccag ctacatcgac aagttgatac ggcgattcga acacgacgaa      3300
     gccaagccat ccaaggtacc aatcgacccc gcgtacctca agcaaaagga ggagacggaa      3360
     ctacctacta acgcctcgta ccgtagtttg gtagggagtt tgctctacgt cgcggtgaac      3420
     acacggccgg acatctgcgt ggccgtctca ctgcttggaa gaaaagtcac caacccgact      3480
     aaccgagatt ggacggaagc taagagggtc ctccgatacc acaaggccac gaagaaccat      3540
     cgtttgcacc tgggctccgg atccggcgaa acggaatgct tcgtggacgc cgactgggcc      3600
     ggagatgaag gcgaccggaa gtcacattcc gggttccttc tgaagttcgg tggcggtctc      3660
     gtcgactggg gaacacgaaa gcagtcgtgt gtcgccctgt cctcaacaga ggccgaattt      3720
     gtcgcgttgg cggatggatg ccagcagctc atgtggtacc ggaagcttct caacgacctc      3780
     aagcaatcat cgcccaagcc gatcatcatc tgggaagaca atcaatcgtg cataaagatc      3840
     gtcgagtcag agcgtcttga acggcgttct aagcacattg acacgaagta cgcctacacc      3900
     aaggatctcc agcagcagag agtcattgaa cttggctaca tgccaacaga gcgcatggag      3960
     gcggacctca tgacgaagcc gttggaacga atcaagctag aaagacacag aaatgccatc      4020
     ggcgtcaaag agccatccga gatgtcgatt tgccaacgtt gaggagaag                  4069
//
ID   Copia-3_AA-LTR repbase;    DNA;    INV; 246 BP.
XX
AC   supercont1.3;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_AA_;
KW   Copia-3_AA-I; Copia-3_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-246
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.3; Positions 2026230 2026475.
XX
SQ   Sequence 246 BP; 72 A; 66 C; 30 G; 78 T; 0 other;
     tgacggacta cacaaccctg tagcaccgtt gtcaatttga agagcgaatt atttcagtgt        60
     aacattttat ctaatttatc ccatttatcc tcactcgatg tacctcacac acaccaacac       120
     gcacactgca tttgttacca cactgctata catttagatt ataataaatc atcattcagt       180
     agttgtcacc caagagaacc acacgtgttt tcttttattc actgctctaa ccgctactct       240
     gcatca                                                                  246
//
ID   Copia-3_BM-I repbase;    DNA;    INV; 4147 BP.
XX
AC   .
XX
DT   23-OCT-2011 (Rel. 17.08, Created)
DT   23-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Bombyx mori genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_BM_;
KW   Copia-3_BM-LTR; Copia-3_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4147
RA   Jurka J.;
RT   "LTR retrotransposons from the Bombyx mori genome.";
RL   Repbase Reports 12(8), 1545-1545 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1482-1976] - Integrase core
CC   'TTAAC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..2261
FT                 /product="Copia-3_BM-I_1p"
FT                 /translation="MEGITGKLQIGLLDEKNWDTWKYKALCLLRTVPSALE
FT                 VVEGSFQEPTRPPTGCGDAELAAYQQQKDKFDKADASAILILTTNMQEDTL
FT                 RKVMRFTKVRDVWLELHRLFDGTNEDKTYNLCMSFFSFKRDQADDIATHMS
FT                 KLKNIWTELNQELKKDSNQELPELLLVCKILDTLDDSYFSFRSSWLLLPKS
FT                 NRTVENLTSHLCAFERALQGNNVPSHHSEALVSNTEKKKDKKLKCNYCLGI
FT                 GHRVRNCQKWIRDGRPPKSQNPTQTATPSTSKTANLLLMSLEDNEIFTVSR
FT                 DNENWYIDNGATSHVTNRADFFQTYEHFNENYTVTTAAGNEVRAKGKGTVQ
FT                 LRGYVNGKQIDISLQDVWYVPAISKNLFSVLALHDRVPNSTFSSRTTECNV
FT                 IVNGKVCLIGKRQKQGGLYRLEVKPVLPEKPPEVFATTATMQLYHERLAHQ
FT                 NKRHVRATIQRELGLNLPMDKETCEGCIFGKAHRLKFGTRTRATAPGEIVH
FT                 TDVCGPFQPSFSSYKYYVLFKDDFTGYRMVYFIRKKSEVKDKLVLMIAQTK
FT                 TVGHTIKCLLSDNGGEFDNASIKNVLDTHGIAQRLVTPYTPEQNGVSEREN
FT                 RTLVETARSMMYAHEPLPQVLWAELINTAAYILNRTGPTSSDKSPHELWYG
FT                 KKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIGYDEDCYRIWVTDG
FT                 KHSTLVRSRDVIFDEKPLPICNSEIPKTEVETREYPITITPNTNLE"
XX
SQ   Sequence 4147 BP; 1284 A; 979 C; 936 G; 858 T; 90 other;
     ggttacggac ccgcactacg aaaatggaag gtatcacagg aaagcttcag atcggcctcc        60
     tagatgaaaa aaactgggac acctggaaat acaaagcctt atgcttacta cgcaccgtac       120
     cgtcggccct agaagtagtt gaaggatcgt tccaggagcc tactcgtcca cctaccggat       180
     gcggcgatgc tgaattggcg gcttatcaac aacaaaaaga taagtttgat aaagctgatg       240
     ccagcgctat cctaatactt accaccaata tgcaagaaga cacacttcga aaagttatgc       300
     ggttcactaa agtacgtgat gtctggttag agctccacag gctgttcgac ggaacaaatg       360
     aggacaaaac ctacaacctg tgtatgagtt tcttcagctt taaaagggat caagcagacg       420
     acatagccac tcacatgtca aaattaaaga acatttggac tgaactgaat caagaactca       480
     agaaggacag taaccaagag ctacccgaac tgctacttgt ttgtaagata ctggacacgc       540
     ttgacgattc atacttcagc ttcagaagta gttggctcct actgcccaaa tccaaccgta       600
     ctgtagaaaa cctaactagt catctctgcg catttgaaag ggcactgcaa ggtaacaacg       660
     taccttcgca tcattcggaa gccctggttt cgaatacgga aaagaagaag gacaagaagc       720
     ttaaatgcaa ctactgccta ggtattggcc acagagtacg caactgtcaa aaatggatcc       780
     gtgacggtag acctcctaag agccaaaatc cgacccagac agcaacgcct tctacttcaa       840
     agaccgctaa tttgttactc atgtctttag aagacaacga aatcttcaca gtttcacggg       900
     acaacgagaa ctggtacata gataatggtg caacaagcca cgtcaccaac agagctgatt       960
     ttttccaaac ctacgaacat ttcaatgaga actacactgt tacaacggcc gctggtaatg      1020
     aagtccgtgc caaaggcaaa ggaacagtac agctcagagg atatgttaac gggaaacaaa      1080
     tcgacatcag cctgcaagac gtctggtacg ttccggccat aagcaagaac ctcttctccg      1140
     tactcgcact tcacgaccga gtcccgaata gcaccttttc atccaggaca actgaatgca      1200
     acgtcattgt caacgggaaa gtatgcttaa tagggaagag acaaaaacaa ggtggcttat      1260
     atcgactgga agtaaaaccc gtactgccag aaaaaccacc cgaagtcttt gcaactacag      1320
     caacgatgca actgtaccac gagagactcg ctcaccaaaa taaaagacac gtaagagcga      1380
     cgatccaacg sgaactaggt ctaaacctgc cgatggataa agagacctgt gaaggctgca      1440
     tctttggaaa ggcgcatcga cttaaattcg gtacaagaac ccgagctacc gcgcccggag      1500
     aaatcgtaca caccgacgtt tgcggaccgt ttcaacctag cttctcaagc tataagtact      1560
     acgttctgtt caaagacgac tttactggct atcgtatggt gtacttcata cgcaagaagt      1620
     ccgaggtcaa agacaagtta gttttgatga tcgctcaaac taaaacagtc ggacacacca      1680
     taaaatgcct tctaagtgac aacggcggtg aatttgacaa cgcgtccata aaaaatgttt      1740
     tagacacaca cggaatagca cagcgactcg tcaccccgta tacacctgaa caaaacggag      1800
     taagcgaaag ggagaacaga accctagttg agacagcaag atcaatgatg tacgctcatg      1860
     agccattacc gcaagtgcta tgggcagagc tcattaatac cgccgcatac atactaaaca      1920
     gaacaggtcc cacaagttca gataaatctc cgcatgaact ttggtatgga aagaaaccta      1980
     ttattaaaca tctccgtata ataggctcaa tcgcatacgt ccatattcca aagcagaagc      2040
     gtagaaaatt cgacaaaaag gcgataaaag gtcgacttat cgggtacgac gaagattgct      2100
     accgtatctg ggtcacagac ggaaaacact cgacgctcgt ccgctctcgt gacgtaatct      2160
     tcgatgagaa acctcttccc atctgtaata gtgaaattcc taaaacagaa gttgagacaa      2220
     gagaatatcc gattaccata acgccaaata cgaacttaga aakagaagtt gcaattccag      2280
     agcaaacaca cgttcacgag ggagatacaa cgcactgcct ccaacggcga gatcatgttc      2340
     tcgagggaga agatcggatc aagtcctcta cgaagaccat gaccaggaga aacgacagtt      2400
     ccagaagaac cacccgagck ctgcaaccac mgccaacgat gcgactgtam cmckagagac      2460
     tcgctcaccg attcgactmm tgagagacac gcaagagatt acgckgtmcm acgcgaamca      2520
     kktccaaata atttcscgmc gmtatgaaaa gagacgattg cgaaggatgg catctttaga      2580
     agggcaatgg atagcgaatt gaaattcctt acgaagacct gaacgtttgg acgccgtgtg      2640
     cattgcacaa aaggacgaaa agcgcttccc tgcaatatgg cttttacgga tcaaacgaaa      2700
     tccagatggc acgatcgatt caaatacgac tcgactggct gtcgtaaaag ggtacagaca      2760
     aaggaaagga gtcggacaca ccatgaaagg ccttctaagt gacacctgtg gcgcgcctga      2820
     ctactgtacg agcactactc atgtgttaga cgcacacgaa aacttacatc tggtccgatt      2880
     cgacgtcccg tgcacagcct ttctgaacgg agtaagctcg aggaagaaat ataccctagt      2940
     tcagaccgcc agatcaaggg tgcaccctca cgagaaggaa cgtctaccgt tttcaagctt      3000
     aaccgtagcc tgtacggact taaacaagca ccaaggtgct ggaactcttg ctttcaagag      3060
     atcctattgg atgtnagctt caaacagtcc gangctgatt gctgcttata ttcaagagaa      3120
     gttaacggga agaanctact gatcncgttg tacgtcgatg acggattagt agctgccact      3180
     gatgaagaca cggctaangc cttcttagaa nattcgaaga agagactgcg cataacgacg      3240
     aaaccagcgg catattatct tggtcttcag atggcacsat cgasgaawgs awggctcsac      3300
     ctgtcgtmaa ccagggkgca kacgmgggaa aggtaktaga ccgckwccag atgagtgack      3360
     gtagtcctgt tcgcacgcct gactgcwgwa mgagcactac tcaagaagkg wwagmgsgma      3420
     cggaagctta cmtstkkccc awwtmgagaa gccgtcggtg cwcwgscwtw ctkaacggaw      3480
     ggtactcgag smwgamatat acgttcaact gccagagggg tgcaacctca cgggaggaac      3540
     stctgacmgw ttggctcaag stwaamcgta kcctgtacgg acttaaacaa gcaccaaggt      3600
     gccggaattc ttgctttcaw gggatcctat atggakmtgg wctcmaaact ggagtcckag      3660
     gmtgatttag cgmcgctkat attcmasgga ggtkawcsgg aagaaactac tggtcacgtt      3720
     scacgwcggk ggcgmtatgt cgctattctg gaggcacagt ttcatggatc agtcagcgac      3780
     aaacatcggt cgctatctcc actacagaag ccgaaattgt ggcagctagt gaagctggca      3840
     gagaactaat gtggcttgct agactatacc aggcattgac tacaattgcg gacgtaccgg      3900
     ttctgcatgt ggacaatgaa gctgctgttc gtcttgctca caaccccgag tttcacaaga      3960
     gaacgaagca tatccggctc agacatttct acgtcagaga attggtaact gagggtatct      4020
     gcaacgttgt acggatcgga acaaaggatc aagtcgcaga catccttacc aaaccactac      4080
     ctcgtacgtc atatgcagtt ctacgccagg cgctaggact gtgtactatg taaatgttta      4140
     gggaaag                                                                4147
//
ID   Copia-3_BM-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   23-OCT-2011 (Rel. 17.08, Created)
DT   23-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Bombyx mori genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_BM_;
KW   Copia-3_BM-I; Copia-3_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-252
RA   Jurka J.;
RT   "LTR retrotransposons from the Bombyx mori genome.";
RL   Repbase Reports 12(8), 1546-1546 (2012).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 252 BP; 108 A; 31 C; 40 G; 73 T; 0 other;
     tgttggagtt aatggatata gaaactcctt atcaaaaaca tatacataga aagaagtgac        60
     aagagttgtc ataagaagaa gtgaaaaaaa atgtctgtca cttcgtgaag taaaataaaa       120
     taagaaaact gtgatttcga taataaattc taaaacatcg acgtaactaa tactaatata       180
     taaaagtgtg ttagtaggta tattatttcg aaactgcctg cactctgcta ccaagaattt       240
     taaataatat ca                                                           252
//
ID   Copia-3_BTa-I repbase;    DNA;    INV; 4063 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4063
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 575-575 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(109..2853,2857..3720)
FT                 /product="Copia-3_BTa-I_1p"
FT                 /translation="MDATKTTPISIEKLSGRENFSNWKFTMKMLLIHEDLW
FT                 EAVTGYSEDDKTSESKRAKNDAKALAKICLTVKPCVFSHVRKCETAKEAWD
FT                 ALIKAYEDTGLSRRLSLLRKLFSIKREHHNSMEEYVDEILSTTQKLADINQ
FT                 PIDNEFVGVIMLSGLPVEYDPLVMAIENSSAEISSDFIKTKLINEIDRHTA
FT                 SEESALYSGGKRLSKATGKPVKCYNCNQLGHFKSQCRNKPKKKNNSWANEK
FT                 KSTPDPTDQKQKTAKDDTSLLTSLCVQYSSSDWYVDSGASAHMTNTKSWLS
FT                 DYCDSNSSMEVTAANGEKMHTAGCGNVQVSFEDSPLTAISNVTYVPNLSTN
FT                 LLSVSAVVNKGFAVIFRARGCEIFREGALYSGKPVASADCINGLYRLNLVR
FT                 DSAAMQSVTEVLEPQALNALTSSVSPDIWHRRLGHLPRYGMDLLNKGMATG
FT                 ISFDKHDLQNSNKCIPCVMGKHARKPFKKICCNLQYAKDLLGIIHTDLCGP
FT                 MSVQSFSGKNYILTFTDDFSRKVFIYFLRTKDEVYDHFINFKAFVENQTDK
FT                 KIKILRSDNGGEYISNAMAKFLQQNGILHQKSVPRSPQQNGVAERVNRWIM
FT                 EKTRCMLEDAKLPKDFWAEAANTAVYLKNRSPHRAVVGKTPEEVWSGKKVD
FT                 LSHLRIFGCEAYAHVSDELRKKLDAKSKKHIFVGYSEESKGYRLIDPENPK
FT                 KIVRSRDVVFIENGQSAKLKSENAESEIKSSKDLVRICLDSNTGLNDDNTD
FT                 EERRFPIRQRKKKEFPDYVMYLSDEVESVPVTYSQAVKSNDSAQWQLAMER
FT                 EMQALHHKNTRRLVERPKDVNVIKCKWVYKIKHPVNGDPEFKARLVAKGFT
FT                 QEFGVDYDETYSPVISKSSLRLLFSLSAKLGLKIDHVDVNNAFLNGDSSET
FT                 IYMEQPQGFVNNDKDKVCLLSKALYGLKQASRVWYGMYYSVMLKLGFTKSK
FT                 YEPCVYLNISKDQYTIIAVHVDDSLIFSNDEITVKNLKKEMQNNFDIKDFG
FT                 TARAVLGLNVDQSANMIKVNQIAFIEDLLTRFNMTNCNPASTPMIANLQFE
FT                 ASEETVCPPDVPYQSLIGSLMYLAVNSRPDIAYATAYLSQFNTKFTTEHWQ
FT                 AAKRVLRYLKGTKNLSLCYEKDDRDLIGFADADWVQNKIDRKSYSGYVFCL
FT                 SSGPISWMSKKQSCVAQSSTESEYIALSEASKEAVFLRGLLSTK"
XX
SQ   Sequence 4063 BP; 1282 A; 802 C; 872 G; 1107 T; 0 other;
     ggttatgggc ccagtcacgt ttaattttca agaattgcat tttccgcgtt ttccggaggt        60
     tatttgtgcg ttaacgtgat cgcgtgtgcg cggctctagt ttcacaaaat ggatgccacc       120
     aaaacaacgc caatctcaat tgaaaaactc agcggaagag agaatttctc gaattggaaa       180
     tttaccatga aaatgttgct gattcatgaa gacttatggg aagcagtaac tggctactca       240
     gaagatgaca agacatctga aagcaaacgg gccaagaatg atgcgaaagc tctggccaag       300
     atttgtctca cggtaaaacc ttgtgtattc tcgcatgtca gaaagtgtga aacagctaag       360
     gaagcatggg atgctttaat taaagcatat gaagacacag gtctgtctcg cagattgtcc       420
     ttacttagaa agttgttttc catcaaaagg gaacaccata actctatgga agaatatgta       480
     gatgaaattc tgtcaaccac tcaaaaatta gctgatatca atcaacccat tgataatgaa       540
     tttgttggag tgattatgtt gagtggatta cctgtagaat atgaccctct agtcatggca       600
     attgaaaatt catctgcgga gatttcaagt gatttcatca aaacgaaact catcaatgaa       660
     atcgaccgac acaccgctag cgaagagtct gccctatact caggcggtaa aaggctttct       720
     aaagccacag gaaaaccagt taagtgttac aactgtaatc agcttggaca tttcaagtct       780
     cagtgtcgga acaagccaaa gaagaagaat aactcttggg ccaacgagaa gaagagtact       840
     ccagacccga ctgaccagaa gcagaagaca gcgaaggatg acacatcact tttaaccagt       900
     ctgtgtgtcc agtacagtag ctctgattgg tatgttgact caggtgcttc agcgcacatg       960
     acaaatacta agtcatggtt gagtgattac tgtgattcca attccagtat ggaagtcacc      1020
     gcagcaaatg gtgaaaagat gcataccgct ggttgcggaa atgtgcaagt ttcctttgaa      1080
     gacagccctt taacagcgat ctcaaatgta acatatgtgc cgaatctttc tacgaatcta      1140
     ctctctgtta gtgccgtggt aaataaaggt ttcgcagtta ttttccgtgc tcgcggctgt      1200
     gaaatttttc gggaaggtgc gctctattca ggaaaaccag ttgcatccgc agactgcatc      1260
     aacggcctgt atcgcttaaa cttagtgcgc gacagtgcag cgatgcaatc agtgacggag      1320
     gttcttgagc ctcaagctct caatgctctt acttcgagtg tttcacctga tatctggcac      1380
     cgacgtctcg gccatttacc caggtatgga atggaccttt tgaacaaagg tatggctacc      1440
     ggcataagtt tcgacaagca tgacctacag aattccaaca aatgtattcc ttgtgttatg      1500
     ggcaagcatg cccgcaaacc gttcaaaaaa atatgctgca atctgcaata tgcgaaagat      1560
     ctgttgggca tcattcacac cgacctttgt gggcccatga gtgtgcagtc tttcagtggc      1620
     aagaactata tcctcacgtt cactgatgat ttctctagaa aggttttcat ctattttctc      1680
     cgaaccaagg atgaggttta tgaccatttt ataaacttca aggcctttgt cgaaaaccag      1740
     acagataaga aaataaaaat tctcagatcc gacaacggcg gggaatacat cagcaacgcc      1800
     atggccaagt ttttgcagca gaatggtatc ttgcatcaaa aatctgtccc cagatcaccg      1860
     caacaaaatg gtgttgccga gagggtgaat cgttggatca tggagaagac tcgctgcatg      1920
     ctggaagatg ccaaacttcc aaaagacttt tgggcggaag cagccaacac agctgtctac      1980
     ttgaaaaatc gttcccccca cagggctgtt gtcggtaaga cacctgaaga agtttggagt      2040
     ggaaagaaag tggatctatc tcatctaaga atttttggct gtgaagcata tgcgcatgta      2100
     tcagatgaat tgaggaagaa gctggatgct aagagtaaga agcacatttt tgtcggttat      2160
     tcagaagaat cgaaaggata tcgtctcatt gacccagaga atccaaagaa gatagtgcgg      2220
     tcacgcgatg tagtgttcat tgaaaacgga cagagtgcga aactgaaatc agaaaatgct      2280
     gaatctgaaa ttaaaagttc caaagattta gtgcgaattt gtctggacag caacacgggc      2340
     ttgaatgatg acaacaccga tgaagaacgt cgcttcccca ttaggcaaag gaagaaaaag      2400
     gagtttccag attacgtgat gtatctcagt gatgaagtcg aatctgttcc agtgacctac      2460
     agccaagcag ttaaaagcaa cgacagcgca cagtggcaac tagcgatgga gagagaaatg      2520
     caggctctgc accacaaaaa cacacggaga ctcgtcgaaa gaccaaaaga tgtcaatgtt      2580
     attaaatgta agtgggtgta taaaattaaa catccagtca atggtgatcc tgagttcaag      2640
     gctaggttag tcgctaaagg gttcacacaa gagtttggcg ttgactatga tgagacatat      2700
     tctccagtca taagtaaatc ttctctcaga ttgctcttta gtttgtctgc aaaattgggt      2760
     ttaaagattg accatgttga tgttaacaat gcctttttaa acggagactc atccgaaact      2820
     atctacatgg aacagcctca aggctttgta aattaaaatg acaaagacaa agtttgccta      2880
     ctctcaaaag ctttgtatgg tttaaagcaa gcgtcacgtg tctggtacgg aatgtactac      2940
     tcagttatgt taaagttagg ttttacaaag tctaaatatg aaccttgtgt gtacctcaat      3000
     atttcaaaag atcagtatac tattatagct gttcatgtcg atgactccct gattttttct      3060
     aatgatgaaa tcacggtaaa aaacctcaaa aaagagatgc aaaacaattt tgacataaaa      3120
     gatttcggca ctgcaagagc agtcttaggt ctaaatgttg atcaatcagc caacatgata      3180
     aaagtaaatc aaattgcttt tattgaagat ctgttgaccc gttttaatat gacaaattgt      3240
     aaccctgcta gtacccctat gattgccaat cttcagtttg aagcaagtga ggagacagtc      3300
     tgtccccctg atgtccctta tcaatcatta attggatctt taatgtattt ggcagttaac      3360
     agtcgccctg atattgctta tgcgacagct tacctcagtc aatttaacac taagtttaca      3420
     actgagcatt ggcaagcagc caaacgagtg ctacggtacc ttaaaggcac taaaaactta      3480
     agtttatgtt atgaaaaaga cgacagggac ctcataggtt ttgctgacgc cgattgggtt      3540
     cagaataaaa ttgatcgcaa atcatattct ggctatgtat tttgtctgtc aagtggtccg      3600
     atctcctgga tgtcgaagaa gcaatcttgt gttgctcaaa gctcaaccga gtctgaatat      3660
     attgccctaa gcgaagcgag caaggaagct gtatttttga gaggtctact atctactaaa      3720
     tgaaatccta aatgttgata gaccaacgac ccttttgttt agtgacagtc aaggcactga      3780
     taatttatcc aaaaatccag ttctccataa tcgttcaaag cacattgatg ttcgtttcca      3840
     ttatattaga gaatgcgttg aaaagggtac tattgtcgta aagtatttgt cgaccgacaa      3900
     aatgccagca gatgctttga ctaagccatt acctggcgaa aaacttagat tttgtagaaa      3960
     tgctatcaac ctgatttaaa aaaaaaaaac aacaagtttt gtattttcct ctttcccgta      4020
     accacacaat gtatttctat ttagtattta gattaaggga gcg                        4063
//
ID   Copia-3_BTa-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-206
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 600-600 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 206 BP; 52 A; 44 C; 35 G; 75 T; 0 other;
     tgttgttatt ttaatctgta atccaaatac aagaactgtc cctctgtacg cgaagtcagt        60
     ctgtactccc cgagtgagtg agtctctctc tcttactcta tctatactct ttgtagcaat       120
     gtagtgctaa gttctgctgt ggttctgctc caataaaatg ttgaacttat tcgtctctgg       180
     actagttatt tagtaactaa acaaca                                            206
//
ID   Copia-3_Cfl-I repbase;    DNA;    INV; 4054 BP.
XX
AC   AEAB01016069;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_Cfl_;
KW   Copia-3_Cfl-LTR; Copia-3_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4054
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01016069; Positions   13589    9536.
XX
CC   Positions [1475-1972] - Integrase core
CC   'ATATT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..2050
FT                 /product="Copia-3_Cfl-I_1p"
FT                 /translation="MAKVSVEEINQVEKLSGVENFQLWKFEVTILLKANDL
FT                 YEVATEISDAVQDAPWLKKDANAQKVIVLSLGKKPMTHVLNCKTAQSMWAK
FT                 LCAIYERDSEQRKCALMQEFFSYTMDKSCDVTTHISKLVNIASNLKALNAD
FT                 IADPMLISKILVTLPDSFKGFVTAWESTASTDKTLENLTSRILAKEARNSE
FT                 QEEKENAVAFKVTKKRCFKCNSTGHLAKACKKTVSKNQTDSKEKQLYCKIC
FT                 KKNNHLEKDCFFRGKETKKKDQQTDKVSFLVHKQENTSSWIVDSGTTSHMT
FT                 NKLEHLENFKQERSKVGVAKANESMLSKGTGTLNSENCVLKNVMHIPDLNS
FT                 NLISVSAITDHGGEVIFTGKEVIIKKDRKQILCGSKKENGLYEIELYTNKR
FT                 ESEEKSYAAHTLDSIKIWHKKLGHLSFNGMKILKGISKGMDFIAKDLKEVE
FT                 ATCEICLKAKQTRVPFEKSETKTKRPLELVHSDVCGPVETQTWNDKRYILT
FT                 MLDDYTHFTVIYLLQNKYEVADTIKEYVKYAAAQWNTKLTRLRCDNGREYA
FT                 NKNLQNWCKENGIQMDFTIPYTPQLNGKAERLNRTLLEKTRALLTESSLKK
FT                 EMWGEAAYTAAYLLNRSSTKLLKVTPYEMWNEKKPDLNSLKIFGCTAHIKI
FT                 LGPLEKKTG"
XX
SQ   Sequence 4054 BP; 1678 A; 636 C; 808 G; 932 T; 0 other;
     ggttgccaac atgggcccag aaagaaaaat atagtcgaag acaataaaat actaaaaagt        60
     gttaaaaaag gtaaaaatgg ctaaagtatc agtagaagag ataaatcaag ttgaaaagct       120
     gagcggagtg gaaaactttc aactgtggaa atttgaagta acaattctgc tgaaagcgaa       180
     cgatttatat gaggtagcta cggaaatctc tgatgcggta caagacgcac cttggctcaa       240
     aaaggacgca aatgcacaaa aggtaatcgt attatctctc ggtaagaaac ccatgactca       300
     tgtattaaat tgtaaaacgg cacaatccat gtgggcaaaa ttatgtgcaa tatacgagag       360
     agatagcgaa caacgaaagt gtgcactaat gcaagaattt tttagctaca ctatggacaa       420
     aagctgcgat gtgacaacac acattagtaa actagtcaac atagcaagta acctaaaagc       480
     cttgaatgca gacatagcag atccgatgtt aatctctaaa attctggtta cactaccaga       540
     ctcttttaaa ggattcgtca cagcatggga atcaaccgcc tcaacggata aaactctgga       600
     aaacttgaca tcaagaatac ttgcgaaaga agcgaggaac tctgaacaag aggaaaaaga       660
     aaatgctgta gcattcaaag tcactaagaa aagatgcttc aagtgcaatt caacgggtca       720
     tctagctaaa gcatgtaaga agacagtatc gaagaatcaa actgattcaa aggagaagca       780
     gctatattgc aagatatgca agaaaaataa tcacttagag aaagattgtt tctttcgagg       840
     taaggagact aagaaaaagg atcagcaaac tgacaaggtg tcgtttcttg tgcacaaaca       900
     agaaaataca tcatcatgga tagtggactc aggcacgaca tctcatatga ctaataagct       960
     ggaacatctg gaaaatttta aacaagaacg atccaaagtc ggcgtagcaa aagcaaatga      1020
     atcaatgttg tccaaaggaa caggtacact aaattcggag aattgcgtac tgaaaaacgt      1080
     aatgcacatt ccagacctga attcaaatct gatatcagtt tctgctatca cggatcatgg      1140
     aggagaagtg atattcactg gaaaagaggt aataattaaa aaggatagaa agcaaattct      1200
     ctgcggaagc aagaaggaaa acggactgta cgagatagag ctctacacaa acaaacgaga      1260
     atcagaagag aaatcgtatg cagcacacac attggattca ataaaaatat ggcataaaaa      1320
     actaggtcac ttaagcttca atggaatgaa gattttaaaa ggaatttcaa aaggcatgga      1380
     tttcattgcg aaagatctga aagaagtgga agcaacatgt gaaatttgtc tgaaagctaa      1440
     acaaacaaga gtgccattcg aaaaatctga aacaaaaaca aaacgacctc tagaattagt      1500
     acactctgac gtctgcggtc ctgttgaaac tcaaacgtgg aatgacaaaa gatacatttt      1560
     gacaatgtta gacgattata cacactttac tgtaatctat ttactacaaa ataagtatga      1620
     agtcgcggat acaattaaag aatatgtaaa atatgctgca gctcagtgga acacgaaact      1680
     gacaagatta agatgtgaca acggtcgcga gtatgcaaac aagaatctac aaaattggtg      1740
     taaagaaaat ggcatacaaa tggactttac tataccctac actccacaat tgaacgggaa      1800
     agcagaaaga cttaatcgta ccttgctgga aaaaaccaga gcactgttaa ctgaatcaag      1860
     cctaaagaaa gaaatgtggg gagaagcggc atacacagcc gcgtatttgc taaatagaag      1920
     ttccactaaa ctgcttaaag taactcctta tgaaatgtgg aacgagaaga aacctgatct      1980
     gaattcacta aaaatatttg gctgtacggc acatattaaa attctaggac cactagagaa      2040
     aaaaactgga taatagaagc agaaaactta tcttcgtggg atatagtcct aaagattata      2100
     gactctggga cgctgaaaga aggaaaataa tcgtctcaag agatattaaa tttgaagaaa      2160
     agcctgaaat cgtaaaagaa agagataata aaaatatatt tgttagactt gacaacgaag      2220
     aagacatgca agaagatcaa aatgaagaag aggaaaacat ataagaagag cttagaaatg      2280
     aaaatgaaga agaaatagaa aatgatcaaa acgaagaaga acaatcagaa gaatacgaag      2340
     atgcagagga agagaatgac atagaacaaa tacaacaatt gcgaagatcg gctcgaacaa      2400
     caaaatttcc acaaaaatat aacgtttatg tttttctaac ctaccaagaa gccatcacgg      2460
     gtgcggaaaa aaaggaatgg aaagaagcaa taaaaataga gaagaattct ttggaaaaga      2520
     ataatacatg gaaagtcatc gataattccg aagcagaaga aaaaaaaaat attaagcagc      2580
     aaatggatct ttaaaacgaa agacaacgaa aaaaagaaag caagattagt agtcagagga      2640
     ttccaacaag ttcaaggaat agactacgaa gaaactttag tcctgtggtc aataacgcat      2700
     ctctgagaat actattcgct ttggctgtga agaagaacta ctcgttgatt acattcgaca      2760
     taaaaacggc ctttctatac ggaaatttgg atgaagtcgt ttacatgtat ccaccagaag      2820
     atggtgataa aatcctatga ttatggtgat aaaatatgta aactacagag agccttatac      2880
     ggactaaaac aagcaccgtt aaaatggaat cggagattct cgactttttt tgagcaagaa      2940
     ggttttaaat caataaagtc ggaacagtgc atctatgtaa acgaagatag aacacttatt      3000
     ctaggattct atgtggatga cggagtactg ttgtacaaag atttacaaaa gtgcaatcag      3060
     tttattgaaa agcttgagaa tgaatttgaa acaacaatca ctaaaaaccc gaagaatttt      3120
     ttgggcatgg aaattaatcg atctccagga aatttaaaac taacacagaa aaatttctcg      3180
     aaaagattgc tgaatagatt tcagatggat gaatcaaagt cggtagatac tccatcgata      3240
     aaatacaacg aagaaacaga agatctagaa aagacaaact acaaatacag agaagcaatt      3300
     ggaggtttgc tatatctaac aacgaaaaca cgcccggatc tggcacaagc tctaggacac      3360
     ggaagcagat acctgaacag ctatacaaaa caacatgtaa cggaagtaaa acgtatgttt      3420
     agatatctca acggtacaaa agatcaaggg ataagctttg ataacataca caacgaaatg      3480
     gaagtgatag cttattgtga ttctgattat gccggagaca tagatacgag aaaaagcact      3540
     acgggatacg taatacttta ttgtggcgga ccaattgtag tattcaagaa gacaacccat      3600
     aatagcaaca tctagcaccg aagcggaata cattgctgcg gcagagtgct gtaaagaaat      3660
     actgcataca aagactctaa ttgaagaagt gttgaacgaa actgcgggtg taaaattaaa      3720
     gatagacaat caaagtgcta ttaaactgat taaaaatggt gttactaata gacgctcaaa      3780
     acacattgat gtaaaatatc attttattca tgaggaatta agaaaaggta caatcaacat      3840
     tgaatattgt caagctgaca aacagctcgc ggatctattt accaaaccgc ttggaaaaac      3900
     taaatttaat actcacaaga tcactttagt taagtaaata agaaaagacg ttattgctta      3960
     aataatatat aatgaaagta tagttaaaaa ctgtaataga ataaattttt ttttgaagca      4020
     tatctatatg agactggtag aaattaagag aggg                                  4054
//
ID   Copia-3_Cfl-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   AEAB01016069;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_Cfl_;
KW   Copia-3_Cfl-LTR; Copia-3_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-317
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01016069; Positions    9535    9219.
XX
SQ   Sequence 317 BP; 101 A; 53 C; 53 G; 110 T; 0 other;
     tgttgagcat tatatttcta cggtcgataa aacggacggt aacttatcga ttagtcacgt        60
     ccttaacaat taaacaatta attaagtaag agatagagtc tgctgccgtt ctgccatgtg       120
     cgtaatattc gtcacgttgt tctttgtaaa attaaaagaa aaataatttt ctgttcgcgt       180
     tataaaggca ggagatatca aaactgtttt tcttttatgc attgaattgt tcatgtgtca       240
     aatatataca gtatattcta ttaacatagt tcatgtggtg actatattat ttcgcacgca       300
     ataaccaccg cccaaca                                                      317
//
ID   Copia-3_CoFl-I repbase;    DNA;    INV; 5909 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5909
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2266-2266 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 5909 BP; 2121 A; 922 C; 1253 G; 1611 T; 2 other;
     ggttatgggc cttaaaaagt gtagtgtggt tgtgtattca agacctccgc tagccgccat        60
     ttttttctct gtgatcgagc ccatctcgcg tttgctcgca cttttttttg ccctccgcgt       120
     tttcttgcgt cccttttctt acaggccatc gacgaggcgg cgtagagatt gacatcagcc       180
     actggtgaga ccgagcagat cggggaggtg acagctggcg gggtgagagg gattgtgagg       240
     gatttacgga agaaagaaag taagtagctg ataatgatgc ttatgatgtc tttgtcggtc       300
     attatgttga cataatgtgt tttatttttc gatggttcga aaccgaaatt gcataagagt       360
     ggtaataata tatgttatag atatgatgaa tatgacagta gatgggattt gtgaagcgtt       420
     ttataaagct agtactctgt aattctcaag ggtcaagagt cggcacgtgt tttttcctcg       480
     cgtgaggcag gcttgcattg gggtacgagg attttcattt ggctgctaca gctatagcta       540
     ccgctgaggg ggacgcctca aagcggggag agggactttc gtttcggcca tgacttgcgt       600
     tcggtcagac cgggcgtatg tattcctttc agtaggcttg gtagctgatg gcgcgcgcgg       660
     agcggccatc ttagatggac ttgtttactt ttccaagtcc ccgtacagtg cggcctcgat       720
     cctctccgtg gattttcacg ctcagactag aggtaaatgc cgactcaaac caaaatgcag       780
     aaatttaaaa tttccaattt tggtgtaata cgcgtcagca catcgtaata acaggcatac       840
     gattgtgctc gatcgcattg gaattgtgct gctattgtgt atgactatag acatgttacg       900
     tttgcatgtt taagtcatct gatgtatctc gtcccatgag tagtgcgcat gcattgagct       960
     cgtgtgtgcg tgcttgctca tgtttcccgg tgacacaaat gggtttaaaa tggtcactgg      1020
     gaagtaatat atataacttg atctgagtta ttataggaga tataagtgac gattacgata      1080
     caggagatca gtttaactta atggaaaaac gtggaggtat aatttacact attccttaac      1140
     acaagcagca cattccagtt aaaggttctt tagatagatt aaagatagaa gatttgaata      1200
     caataagtca cgtgcaaaca aaatttaaga tagacataaa caaagggaac ctttaacaag      1260
     atagcaaact aaagatttga gagatagaaa aataaatttg attgatgcmt catctaaaga      1320
     caagaataaa gatttgagag atagaaaaat aaatttgatt aatacctcat ctaaagacaa      1380
     gaataaagat ttgagagata gaaaaataaa tttgattaat acctcatcta aagacaagaa      1440
     taaagatttg agagatagaa aaataaattt gattgatacc tcatctaaaa caagaatgaa      1500
     gatttgactt gaaaagaaag atagacttga ttgatacaag attattttaa caggaaagca      1560
     aattaaagct ttgaaaaata gaaagataga cttgattgat acaagattat tttatcaaga      1620
     aagcaaatta aagctttgga aaatagaaag atagatttaa ttgatacaag attattctaa      1680
     caagatagca catcaaatat tagaaaaaaa aaggatttga ttaatacata aacatagata      1740
     gcatgttaca gatcttaact atagaaagaa attcaaagaa acagatagaa aattgtacaa      1800
     gaaaatgata gcaaaaataa tgaaagatag aattgacaaa aagccaggag cacaagaaag      1860
     atttgattaa tacataaact atagatagca tgttaaagat ctgaactata gaaaagataa      1920
     tttaaagaaa cagatagata atttgcacaa gaaaatggca ggcagaaata atgatcttaa      1980
     gatagaattg actaaaggag ccaggagccc acaagaaaga tatttagggg attcaaaagt      2040
     tgactgaaga tagagagcag actttaaatt taacactaga tagattatcc ttagattatt      2100
     aaaacagagt atttttttta attatcctac ggtaatagtg caaaaattaa tgatatgaaa      2160
     agaagtgata tacagatgaa ggcgtatcaa atatacaaca aaattcacac tgttagattt      2220
     gatcccgcaa agcaaagtga tattaaattt tgcgaattcc tcgatagatt aagatggatt      2280
     ttgaatggat tttgatagat ttcaaacttg ttagtaaaac tcagagtttt cttgaagatg      2340
     agaaaagaga tgacttttac cataagattg tcaataaagt accagatgtg aaaattgcag      2400
     attctaatag actgtttaaa agcgagaatg gcttgtccta taaatattta agtgaagtgt      2460
     aaagaaggtt aaagtaatat agaattgctt agatctaatg catcgagtag tatgtttgtt      2520
     gttggacccg aaactttgct ctctacgcgc acggaggaaa ccaaaaattt atgaaagaaa      2580
     attggttaaa tgcgcgaata aaaattcctc cgtgaacttg agagcggagg gagaaaggtg      2640
     ggtttcgggt agtaataaca aaaacaaaat ggtcctagat atagtgatat gcgccaatat      2700
     gctcgctgga aacttgctgt cgcttcgtca gcttgttaat aggtgcatat gtatctattt      2760
     agataacctt aagatagata tatttgaccc acgctctaac gagacgttaa tttccgatgc      2820
     ctacagagtc ttcattggat agtgaaacta gtgcaagatg gtcagagtac aagcaacaac      2880
     aagaagtgta aagaaattat agattgctta atgatagaat gtgcctctgc ggcaatggct      2940
     gagaagattc aggaagtcag taccaattat agtaagagct gacctataat cccaaacaat      3000
     ggatctgaaa acgattgttt agataccgct caacaaaatg agtctgagaa aaccattaaa      3060
     gatagaaaaa ttaatgatag taaagaacta atgatcggtg agatttcaga ggcttaaagt      3120
     ccctttatat aaaggtataa aatacttaaa agaaatagca gagccatgct ctaaaacgca      3180
     agattcaggc atttatcgtt ggaatatctt aaggattgca gagaaagttt ttggacaata      3240
     aagatttgaa taagtctgtg ttcgatcact tcattgcatt atgcaaggtg tgtcatattg      3300
     ctaaaattta aagaatgcct ttgaacacta gaagagagag ggcatcgaaa caactcatcc      3360
     taaaagatac aaatttatga tagtgtacac agacgactac ttaatattga cgatggcata      3420
     ccctgtgaaa gtgaaaagta aagcaagaaa ttgtatggac aaatttgcga ccagtgcacg      3480
     aaatctactg gactttaatg caaagatgtg ctattacaga actgaccaag gcacagagtt      3540
     tgcaggaggt cgaacggtgg aaattctcca gagattggga gctgagtctc aactggtttc      3600
     tccagacaat cttcaataca atggcgtttc agaacgaatc aatcgcacac cacacctgtc      3660
     caacaaaata acagctccct taggaaattt tacccccaat ctaaagatag aaataaatca      3720
     aataagattt ggtcgtgtgg cctttattaa gatacacagg aacactggaa ccaaatacag      3780
     cccacaaggt atacgagtag tactggttgg ctatactact accggctaca tttttctaag      3840
     accagaggat gcaaatttta tgaggttccg ggtgtaagat ttcatgaaag acttgtattt      3900
     agaaatgtct ggggaagtga taaaatagca aactgaaata atcataagac agacattaaa      3960
     taagatgaat ggttcattaa gtttggtaaa gatagtcttg aagtattatt agaaacggag      4020
     ggagaacaat gagtcaagat aaaatgagga caaccgagga agaataaaga gcttgttcaa      4080
     gaaaacttca aagcaattta cgaagaattg gagtcgatgc ataaaatcaa gtatggaaaa      4140
     ttgtagatag accaactatg aatgttaaag gaagcaagcc aaacatcata gattccagac      4200
     gagtcctaaa gaagaagata gacgaagatg ggaaccacga catttaaagt aaggttggtg      4260
     attcgtgggt ttaaagatag gaataagtac gacttgcaag agacttatgc ccctgtatct      4320
     gggttggctc ttgtgagatc ggtaatatca acttttaata aatttaatct agaaacttgt      4380
     ctgctggatg tcaagacagc attcatgaat gcttcaatca agaaagaaat aaatatagtg      4440
     tttcttgaag gtctgcttga cgaagattaa cttaagaaaa ataaagtatg taatctagaa      4500
     aaagcccttt atagactcaa gatcagcttg aagaaatgga tcgagtgttt tcgtgtggct      4560
     gcactgaaac tagtatcaca aacgcacacc agtgaaactt gcctttacgc atggaaagaa      4620
     aaagttagcc ttttaatctt gattccatat gaagatgata tcatgatagc aagaaattgg      4680
     taagtaaacc aaaagaaatt aagattggtc tgcagtctga ctttgagata tcagatcttg      4740
     gcgaggttgg cactttccta gttatcacag taacaagaga tagaaaacat aattcaattt      4800
     cacttacgca aacaccatac ttcgacaaag ttctggaaag gtttggattt accgactcaa      4860
     aaccacaaag aacaccaatg gtgacaaatc aagtcctgaa tcggcaaaga aaagacagat      4920
     aagaatcgga agaaactgga gaactgaaac aaaactaaaa ctgaagaaaa tgtacctcac      4980
     agaaaagcag ttggaagcct gctgtatctg gctaacacag tcagaccaga catctcgcac      5040
     tctgtgaatg tattaagcag acaccaaatc tgcccaactg atgactagag aatggtaaaa      5100
     cgagtccttc gatatctgta acacaccaga actctgggat taacctacag aggccggaaa      5160
     aataagctgg aagtcttttc agatgcgagt ttggcagact gtaaaggctc aattacgaca      5220
     ggtggatacc tcataagatt gtattgcgat acagttgctt ggaagacgag aaaaccgagt      5280
     tacgttgcaa tctcaacctg cgaggcagaa tacgtggcga tgtgtgatgc aaggcaggag      5340
     ctgataggat tggaacactc aatcagctta atactgtcat acattctgtt gcctgcggac      5400
     ctttggtgtg acaacawagc cgccggagca agtgctaata tagatggtgg caaaagactg      5460
     agacacatga ccgagatcaa ggctcactac gttaaggaat gtgtatccag aggaaaaata      5520
     atcgttaaat ggattccatt caaggaacaa ctagcagaca tttttacaaa acccctgccg      5580
     tttgaactgt atgaaagact aatgaaagaa attttgaatg ttaatcagtg taaattgcat      5640
     gataattaaa cttgaacttg agatagtaaa attaataaat tgataataga tagataatga      5700
     tagtagacat gccgattaat gtatctctct gtgtatgttt tagctcgtca caaccaaccc      5760
     caatgagtga tcaagaagcc gacgtgttcc acatcttcag ctgattactt attcatttaa      5820
     atatgattac tcagtgttaa tattccaata tgtctttcct tttttcattt tatattgttt      5880
     tgttaaattc agatacgaac gggagggag                                        5909
//
ID   Copia-3_CoFl-LTR repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-343
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2287-2287 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 343 BP; 93 A; 77 C; 63 G; 110 T; 0 other;
     tgttagatgt atatttggcg ctcgtaactg aattctaacg catgcgcaat agcaagaaga        60
     cgagacgccg tgacgctgca cttcagcgtc taatacctat agtttactca ctctcgcgcg       120
     gtcagtcagt ctgtcgatac gcactccctg cttttcgtat tttccttttg atttgatctt       180
     gctttatttc agttcagctt acgattgtat ccttgattgt aaagactaaa gatagcatac       240
     actgaagata gtgagaataa acgtgtccgt gttttataat aaaaacgaca gtgttgtaca       300
     ttttattgcc cgatcacata cccacacatc catactgcta aca                         343
//
ID   Copia-3_CQ-I repbase;    DNA;    INV; 4167 BP.
XX
AC   AAWU01023967;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_CQ_;
KW   Copia-3_CQ-LTR; Copia-3_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4167
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 321-321 (2011).
XX
DR   Genome; AAWU01023967; Positions   10573   14739.
XX
CC   Positions [1474-1977] - Integrase core
CC   'GTATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..3243
FT                 /product="Copia-3_CQ-I_1p"
FT                 /translation="MEADKVGLPQFDGTHFAIWKFRVELLLEEKELSDHIE
FT                 KEPTASNLALAEWKLKDVKARNLIVKCLTNDYVDSVRGKTTARQMWKTLLE
FT                 AHAKTGTVSEMFLRKKLLALKYVDGESMEKHLASFDSIVTDLRAAGADVKT
FT                 PEAITYLLETLPRSYDNVATALMTIDPETLTVAKVKANLLNEYVKQKERSG
FT                 TGQEETKPAVFLGKVDRRRKPFPGQCWRCKQTGHKSFECQAPEEGAGSSRE
FT                 SGGEVAVRLPTKKKAFQLRRPDAEEGEESVPRGGFAFMTKTTELKRKGGSE
FT                 VTWIIDSGCTDHMVNDSSLFLAEQTLRNSYPVSLAEEGQAIAATKVGFISA
FT                 MSYVQGKEYLCEVSDVLYAPGLRHNLLSVSRLEKAGFSVVFRNGVVELLDG
FT                 NTIFAVGKRTQDLYELSFTLNRVEANSIQANVDRNILWHRRLAHLGMKSVR
FT                 DLARRQMAKGIDSSITDSTELCEACIMGKHSRPPFRSRESRASRPLERVHT
FT                 DVCGPITPATWDGKRYFVTFIDDCTHFTVIYLIASRDEVLPRFKEYKAMVE
FT                 AGFDLPLSKLRCDNGGEYVSNEFKSFCRDSGVVVEYTMAYTPEQNGEAERM
FT                 NRTIVEKGRAMIYDSGLPKEMWGEAVMCALYVTNRSPTRALKADVTPAEEW
FT                 YGEKPDLSALRVFGCKAYAHIPKHKRGKFDPKSRECIMIGYDTNGYRLWDP
FT                 VNRKLLLSRDVIFKEDEFPAIENPCERGSELRVTSADRFVSEDRVTSADRF
FT                 VSEDRVMSADGFISDDRAEEVGGVTGVDGGPTAEEPVPEVEEEVSAVSDDE
FT                 FFDSENPEQEERVQEAEVVLVEQEVSTVSAGGEEVNNEQDPLLVRKERSRR
FT                 PPLWHQDYDMESSALLAEGNPDDVPVSYADIEGRSDETCWRRAIEEELSSL
FT                 KINDTWDIVPNSAGKKVISAKWVFKRKLDKDGNPDRYKARLVARGFLQTHG
FT                 VDYQETYAPVAKLATIRFLLAIGIQRGYHFCHMDVVTAFLHGNLEQPVYMK
FT                 APDGVEAANGSVLKLKRSLYGLKQSPKCWNDRFHYYVISIGFVQSKADYCL
FT                 YVKEDAAGLLYLLLYVTI"
XX
SQ   Sequence 4167 BP; 1072 A; 940 C; 1246 G; 909 T; 0 other;
     ggttatgggc cctgcacgat ggaggcggac aaagtaggtc ttccgcaatt cgacggaaca        60
     cattttgcga tctggaagtt tcgcgtggag ttgttgctgg aggagaaaga gttgtcggac       120
     cacatcgaga aggagcccac ggcatcgaat ttggcactag cggaatggaa gttgaaggat       180
     gtcaaagctc gaaatttgat cgtcaagtgc cttacgaacg attatgtgga ctctgtccgg       240
     ggcaagacga cggcgcgtca gatgtggaag actcttctgg aagctcacgc gaaaactggt       300
     accgtgagtg agatgttcct gcgcaagaaa ctgctggccc tgaagtacgt cgacggtgaa       360
     tcaatggaaa agcatttggc aagttttgat tcgatcgtga ccgacctgcg ggcagctgga       420
     gcggatgtca agacacctga ggcaatcacc tatcttctcg aaacgctgcc acggtcatac       480
     gacaacgtcg ccaccgccct gatgaccatt gatccggaga cccttacggt cgcaaaagtg       540
     aaagctaact tgctgaatga gtacgtgaag cagaaggaaa gaagcggcac tgggcaggag       600
     gagaccaagc cagctgtttt tcttgggaaa gtcgatagac gccggaagcc gtttccgggt       660
     cagtgttgga gatgtaaaca aacgggccac aagtcgttcg agtgtcaagc gcccgaagaa       720
     ggagcaggaa gttcacgtga gagtggtggg gaagttgctg tgaggttacc aaccaagaag       780
     aaagcgttcc agctccgacg accggatgca gaggaaggcg aggaatctgt cccaagggga       840
     ggtttcgctt tcatgaccaa gacaacggag ctgaagagaa aaggtggctc ggaagttact       900
     tggatcatcg attccggctg cacggaccac atggtgaatg acagctccct gttcctggca       960
     gagcagactt tgaggaactc gtaccccgtg tcgctggcag aagaaggaca agcaatagca      1020
     gcaacgaagg ttgggttcat ctctgccatg agctacgtgc aaggaaagga gtacctctgt      1080
     gaggtttccg atgtgctgta tgcccctgga ctccggcata acttgctgtc ggtgagtcgt      1140
     ctcgaaaaag ctggattttc ggtcgttttc cgtaacggtg tagtagagct gcttgatggg      1200
     aacacgatct tcgcagttgg aaagcgaact caggatttgt acgagttatc gtttacactg      1260
     aaccgtgtgg aggcgaattc gatccaagcg aacgtcgaca ggaacattct ctggcaccga      1320
     cgtctagcgc atcttggtat gaagagtgtt cgagatttag cacggcggca aatggctaaa      1380
     ggaatcgatt cgtcaattac agattctact gagctctgtg aagcgtgcat catgggaaag      1440
     cactccagac cgccgttccg gtctcgtgaa agtcgtgcca gccgtcccct ggagcgcgta      1500
     catacggatg tctgtggacc gatcacacca gcaacatggg atggaaaacg gtattttgtc      1560
     acgtttatcg acgactgtac gcacttcaca gtaatctacc tgattgcttc cagagatgag      1620
     gtcctcccac ggttcaagga gtacaaggcg atggttgaag ctgggttcga tttgcctttg      1680
     tccaagctgc ggtgcgacaa cggcggggag tacgtgtcaa acgagttcaa gagtttctgc      1740
     cgggacagtg gtgttgttgt cgagtacacg atggcataca ctccggaaca gaacggcgaa      1800
     gctgagcgga tgaatcggac gatcgttgaa aaaggcagag cgatgatcta cgattctggg      1860
     ctgccgaaag aaatgtgggg agaagccgtg atgtgtgctc tctacgttac gaaccggagt      1920
     ccaaccaggg cgttgaaagc ggatgtcaca ccggcggaag aatggtatgg agagaaacca      1980
     gatctttccg ctctgagagt ttttgggtgc aaagcttatg cgcacatccc gaagcacaag      2040
     agaggaaagt tcgacccaaa aagccgggag tgcattatga ttggatacga cacaaacggt      2100
     tacaggctct gggatccggt caaccgaaag ttattgctgt cacgggacgt gatcttcaag      2160
     gaagacgagt ttccagccat tgaaaatcca tgtgagcgcg gatcggagct tcgcgtcacg      2220
     tcggcggatc gcttcgtctc ggaggatcgt gtcacgtcgg cggatcgctt cgtctcggag      2280
     gatcgtgtca tgtcggcgga tggcttcatc tcggatgatc gtgctgaaga agtcggtggt      2340
     gttaccggtg tcgatggtgg tccaactgca gaggaacccg ttcctgaagt ggaagaggag      2400
     gtgagtgctg ttagtgacga cgagttcttc gactcggaga atccggaaca ggaggagcgc      2460
     gtgcaggagg ccgaagtcgt gttagtggag caagaagtgt cgactgtgtc agcgggaggc      2520
     gaagaagtga acaacgagca ggaccccctt cttgttcgca aagaaaggtc gcgtcgacct      2580
     ccactgtggc atcaagatta cgacatggag tcatcggcat tgctcgcaga aggaaatccg      2640
     gatgacgtgc cagtctcgta cgccgacatt gaaggacgca gtgatgaaac atgctggagg      2700
     cgtgctatcg aggaggagtt gtcatctttg aagatcaacg acacgtggga catcgtgcca      2760
     aattcagcgg gaaagaaggt gatctctgcg aaatgggtct tcaagcgaaa gctcgacaag      2820
     gacgggaacc cagaccggta taaggcgcga ctcgtggcac gcggcttcct tcaaacacat      2880
     ggagtcgatt atcaggaaac atatgcgcct gtggcaaagt tagcaacgat ccgatttcta      2940
     ctggcaattg ggattcaacg aggttaccac ttctgccaca tggacgtggt aacagcattc      3000
     ctccatggaa acctggagca gccggtttac atgaaagctc cagatggtgt tgaagcagct      3060
     aacggatctg tcctgaaatt gaaacgctca ctctacggcc tgaagcagtc tcccaagtgt      3120
     tggaacgatc gcttccacta ttatgtgatc agcattggat ttgtgcagtc gaaagcagat      3180
     tactgcttgt acgtgaaaga agatgccgcc ggactgctgt acctgctgct gtatgtgacg      3240
     atctgatgtt tgcgaagtga tctgaaagcc atgagactga aggtgtgctg tctacagagt      3300
     ctcatgaaag actcggctgt gtcgaacatt tcatgggaat gcgcatcgcg atcgatcgag      3360
     atcgtgggag agtcacaatc agtcaggcgt ttttgctgaa tccattttgg agcgtttcgg      3420
     catgcaatcg tgcaattcag taaccactcc catcgaaccc agcaccaaac ttcgccggcc      3480
     tgagggggca acgaacacgg acactcggta cagagagtta attggaagcc tgatgtatct      3540
     catgttggga agccgtccgg atctttgctt tgcggtaagc tacttcagtc gctttcaaga      3600
     ttgtgcgggc gaacagcact tcaaccactt gaagagggtg cttcgttacc tgcggggaac      3660
     gagtgcgtac gaactggttt actctcggaa tcctgacgca gcgccaatca caggatacgt      3720
     cgactcggac tgggcgaacg atttggatga tagacggtcg acaagcgggt tcctattcca      3780
     agtctacggg aacattgtga gttgggctac ttgaaagcag ggtgtcgtag ctcaatcaac      3840
     aacagaagct ggatacatcg cagcagccaa cgcagtctcg gaggccctgt ggttcaaaaa      3900
     gatgttcgcg gacatccttg aaccaattcg tcacccaatc ccaatccagg aggacaatca      3960
     aggttgtttg tttgtggcca gaaatccgga gacgaagaga accaaacatg tggacgtcaa      4020
     gtatcatctg gtacgagaaa aggtgtgtaa caaggaggtg gtgctggagt atgttccgtc      4080
     tgaacaacag gcggccgata tcttaacgaa gccgctccac gaggagcgtc gaaaatccgg      4140
     gatgtcctgg gatggaaaga ggaggag                                          4167
//
ID   Copia-3_CQ-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   AAWU01023967;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_CQ_;
KW   Copia-3_CQ-I; Copia-3_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-176
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 322-322 (2011).
XX
DR   Genome; AAWU01023967; Positions   10397   10572.
XX
SQ   Sequence 176 BP; 55 A; 41 C; 32 G; 48 T; 0 other;
     tgtaggcgtt taactttcca tccccctggt caagcgcgtc atctgtcatc gacgtctgtg        60
     ccatgtagtt tagttcaaag caaatgacat tacaaaaaca cacgcggttt agcaaaccag       120
     aaataaagcc catttttcgt ttaaagttaa tcggagttta atcgcaaaaa ccagca           176
//
ID   Copia-3_DAn-I repbase;    DNA;    INV; 4464 BP.
XX
AC   AAPP01017139;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DAn_;
KW   Copia-3_DAn-LTR; Copia-3_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4464
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017139; Positions   30030   25567.
XX
CC   Positions [1655-2161] - Integrase core
CC   'ATAC' target site duplication
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           456..1577
FT                 /product="Copia-3_DAn-I_3p"
FT                 /translation="MQFTREEASQLSLRKKLLAMELKGDTSLLNHFNSFDD
FT                 LITELIASGAKLDDMDKISHLLLTLPPSYDGVITAIETLSEDNLTLAFVKT
FT                 RLLDQEIKLRNISKDTSTKVLQAVGNKEFKDAKFNNNPMQKFKKKLFKPSF
FT                 KPKPKCFHCGKPGHLKKDCFFLKRQPNQNANVNKRKEGQAQMATAAATQPE
FT                 RSFAFMLRNATSNSNTNEAEFILDSGASDHLINVTALFSKYDHLQSNMPIE
FT                 IAKRGEFIYATAKGVVNITSCGNQITLQNVLYCKDIPHNLLSVKKMQDAGM
FT                 TIEFNPGGVKVSKDGKLVFNGIREFNVPIIKFQLNSKVFMSKILNSAEYRL
FT                 WHERLGHISVGKFLEINRNSLFEDTNILILI"
FT   CDS           join(2269..3069,3073..4059)
FT                 /product="Copia-3_DAn-I_1p"
FT                 /translation="MIARNVVVDEINMLKSRVLHGKVSDVQSNTVEQNNES
FT                 LTKENEELDFPLVENNESVDSELNEQLNENSTYLENADPVVETGDKLKENK
FT                 KEEEIRRSERIKSKPKLSYRFLERCLMNTQTCLDDIPNTFEEIKFRGDRSF
FT                 WENAIQDELRSHFQNNTWPLVHKPDNKNIVDCKWVFSIKKDEFGNLVKYKA
FT                 RLVARDFTQEYMTDYDETFAPVARNSSFRFLLALSNQHDLMVYHMDVKTAF
FT                 LNGTLKDEIYMNVPKGLNHSYEKKVCLNKAIYGLKQAARCWFEVFESVLKD
FT                 VGFQNLGVDRCIYILDKGDISGNIYILLYVNDIVIATSKSDTMSNFKSYLH
FT                 DKFQMTDLREIRHFIGIKIDRSDGEICFSQSAYIKRALRKFNMEDCNSVST
FT                 PLPSKLDYTALQSEELCDAPCRNLIGCLMYIMLCTRPDLSTPISILSRYAN
FT                 NNNKELWQCLKRVLRYLKGTVNLKLRFKKETNFNSILTGYVDSDWAGNETD
FT                 RRSTTGYLFKMFESCLISWSTMKQKSVAASSSEAEYMALFEGVREALWLKS
FT                 LINEISLKLNGPIEIFEDNQGCISIANNPTCHKRTKHIDIKYHFTREQI"
XX
SQ   Sequence 4464 BP; 1616 A; 655 C; 856 G; 1337 T; 0 other;
     gtgaataagt aaagcatacc tatatacatt taatcaattc gcgagttttt tttttctgga        60
     aacgctttga caaattagcc gcaaatcacc acgtagcggc aggacggtgt tacaagatag       120
     tgctactgtt gcgaaacgtt attgctgtaa gaagttgctg gaaattgtgg ctgtgaaatt       180
     tgcttttgtg tgatagaatc ttacaatgga taaagggaaa aaaaatatca aaccgtttga       240
     cggtgagaaa tattcaatat ggaagtttag aatgagagcg ttgctggaag agcatgatct       300
     tctgaaggtt atagatgaaa cgcatgaaaa agtgactgat gagataaaaa aggcagaacg       360
     aaatgcaaaa ggtttaataa ttgaatacct aagtgatgca tttctatctt tcactaacag       420
     tgagagcact gctaagcaga tttttgcaaa tttagatgca atttacgaga gaagaagcat       480
     cacaactatc tctgcgaaaa aaacttttag ccatggagtt aaaaggtgac acttcactcc       540
     tgaatcattt taattcattt gatgacctca ttaccgaact tatcgcatca ggagcaaaat       600
     tagatgatat ggataaaatt tcccatttac ttctaactct tccacccagt tatgatggtg       660
     ttataacggc aatagagact ctatcagaag ataacttgac attggctttt gtaaaaacac       720
     gacttcttga ccaagaaata aagcttcgga atattagtaa ggatacgagt actaaagtct       780
     tgcaagcagt aggtaacaag gagttcaaag atgcaaaatt taacaataat ccaatgcaaa       840
     agtttaagaa aaaattgttc aagccaagtt tcaaaccgaa accaaaatgt tttcattgtg       900
     gtaagccagg acatttaaag aaggattgtt tctttttgaa aagacagcca aatcagaatg       960
     ctaacgtaaa caaaagaaag gaagggcagg ctcagatggc aacagcagca gcaacccaac      1020
     cagagcgtag ttttgccttc atgttgagaa atgcaacttc caattcaaat acaaacgagg      1080
     ctgagtttat actagactca ggagcatcag accacctaat aaatgtcaca gcattgttct      1140
     ccaaatatga ccatttgcaa tcaaatatgc ccatcgagat tgccaaacgc ggagagttta      1200
     tctacgctac agccaaagga gttgtcaata ttaccagctg cggaaaccaa atcaccttgc      1260
     aaaacgtttt gtattgcaag gatattccac acaacctact atcggtaaag aaaatgcagg      1320
     atgcaggtat gaccattgaa tttaatcctg gaggtgtaaa agtatccaaa gatggtaaat      1380
     tggtttttaa tggaatccgt gagttcaatg tacctattat aaaatttcaa ttaaacagta      1440
     aagtatttat gtctaaaatt ttaaatagtg ctgagtatcg attatggcat gaaagattag      1500
     gtcacataag cgtaggaaaa tttttagaaa taaatcgaaa tagccttttt gaagatacta      1560
     atattttaat attgatttaa atcatgaatt atgcgaggct tgtataaatg gcaagcaatc      1620
     tagattaaag tttcaaaaat ttaaaaataa ggaaaatatt acacgacctt tgtttgttgt      1680
     ccattccgat gtttgtggcc caataacacc cactaccatt gataataaga actactatgt      1740
     agtttttatt gatcagtata cacattactg tgtaacctat ttaataactt ataagtcgga      1800
     tgtgtttttc tgtttcaagg actttgtagc gaagagcgag gctcacttca atttaaaaat      1860
     tgtgaatttg tatatcgata atggaaggga atatctttct ggtgaaatgc gtgatttctg      1920
     tgttgaaaaa ggcatcagct atcatttaac ggttcctcat actccagagt tgaatggtgt      1980
     atcagaacgg atgatacgaa ctatcaccga aaaggctcga tctatgatca atggtgctca      2040
     acttaataaa catttttggg gtgaggctgt tttaacatca acctatttaa ttaacagatc      2100
     cccaagtaga gcattgcaaa agataaataa aacaccattt gagatgtggc ataacaaaaa      2160
     gcataacaaa aaaaaaaaag aaagtttgac gaaaggtcaa ttaaagctat acttgttgga      2220
     tatgaaccaa atggttataa attatggaat gaggaatcga ggaaatgtat gatagcaaga      2280
     aatgttgtgg tggatgaaat aaacatgcta aaatcaagag ttttacatgg aaaagtttcg      2340
     gatgttcaaa gtaatactgt tgaacaaaat aatgaatctt taactaaaga gaatgaagag      2400
     ttggattttc ctttggtgga aaataatgaa tctgttgatt ctgagttaaa tgagcaactc      2460
     aatgaaaatt ccacatatct tgagaatgcc gatccagtcg ttgaaactgg tgataaatta      2520
     aaagaaaata aaaaggaaga agaaatcaga cgcagtgaaa gaattaaaag taaacccaaa      2580
     ttatcatatc gatttttaga aagatgtctt atgaatactc aaacatgctt agatgatatt      2640
     cctaatacct ttgaagagat taagtttcgt ggggacagat ctttctggga aaatgctata      2700
     caggatgaac ttagatctca ttttcaaaat aatacttggc ccttagtgca taagccagat      2760
     aataaaaaca tagttgattg caaatgggta tttagtatta aaaaagatga gtttgggaac      2820
     ttagtaaagt acaaagctag acttgtagcg cgggatttca ctcaagaata tatgactgat      2880
     tacgatgaga catttgcacc agttgcacga aattccagtt ttagattttt gttggcactt      2940
     tcaaatcaac atgatttaat ggtttatcat atggatgtaa aaaccgcatt tttaaatgga      3000
     actctaaagg atgaaatcta catgaatgtt ccaaaaggcc tgaatcattc ttatgagaag      3060
     aaagtgtgtt agcttaataa agctatatat ggccttaagc aagctgctag atgttggttc      3120
     gaagtctttg aaagtgtatt gaaggatgtt ggatttcaaa acttaggagt tgataggtgt      3180
     atttatattt tggataaggg agatatttcg ggaaatatat atatcctgtt atatgtaaat      3240
     gatatagtaa ttgcaacaag taaatcagat acaatgtcaa attttaaatc ttatcttcat      3300
     gataagtttc aaatgaccga cttacgggaa attagacact ttattggcat aaaaattgac      3360
     agatctgatg gagagatttg ttttagtcaa tcagcatata ttaaaagagc attgagaaaa      3420
     tttaatatgg aagattgcaa ttcagttagt actccactcc caagtaagtt ggactatacg      3480
     gctctgcaat cggaagaact atgtgatgca ccatgtagaa atttgattgg ttgtttgatg      3540
     tacataatgt tatgtacacg gcctgactta agtactccaa taagtattct aagcaggtat      3600
     gcaaacaaca acaataagga actatggcaa tgccttaaga gagttcttag atatctgaag      3660
     ggaactgtca atctcaagct aagattcaag aaagaaacta attttaatag tattcttaca      3720
     ggatatgtag attccgattg ggctggaaat gaaactgaca gaagaagtac cactgggtat      3780
     ttatttaaaa tgtttgaaag ttgtttgatt tcatggagta ccatgaagca aaagtcagtt      3840
     gctgcttcat cttctgaagc tgaatacatg gccttgtttg aaggtgtaag agaagctctt      3900
     tggcttaaat cactaataaa tgagattagt ctaaaattaa atggtcctat agagattttt      3960
     gaagacaacc agggttgtat aagtattgca aataatccta cttgccataa gagaacaaag      4020
     cacatagaca ttaaatatca ttttacaaga gagcaaattt aaagaaaact aatttgtgta      4080
     aagtatattc ccacagatct gcaactagcc gatatactga cgaagccatt accaactgca      4140
     cggtttattt ccctgcgaag ccagctggga cttgctgagt aaatcaacaa aaaaaaaaaa      4200
     agtttttttt tgttattaat ttcaaactta tggaacttat tttgttatct aaaacttatg      4260
     ttacttatgt taatattttt ttttggtcta gttgggttta actgggtttc cccaactctt      4320
     gcagcaaatg ctggacctaa tgtatcccca gaattaaatg aaaatatgaa gttttgaaag      4380
     aaatgaagat actaattaaa attaaagcac aaactcatgt caagaatcgt agtgataacc      4440
     aatgtaactt ttgaggcggc gtat                                             4464
//
ID   Copia-3_DAn-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   AAPP01017139;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DAn_;
KW   Copia-3_DAn-LTR; Copia-3_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-302
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017139; Positions   25566   25265.
XX
SQ   Sequence 302 BP; 83 A; 43 C; 52 G; 124 T; 0 other;
     tgaaatttgc gtattcaaat atgcaaaagt aacatagaca gttatgctat atattcactt        60
     gaatgtaagg atgtagcaag tgtatacaca ctataaatgt gttccttgtt tctcgcctat       120
     ttgttgatat cttgtcctct tgacatttta cttcacttca tttctggcat tgagagcgtg       180
     tggtttataa aatctttatt gtgtgtttta tttattcatt gagggtttct ggttaatact       240
     taattgtttt acttatttat taacaaaacc aatagtggga ttgcacattt tgagcatggc       300
     ca                                                                      302
//
ID   Copia-3_DBp-I repbase;    DNA;    INV; 3767 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3767
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 652-652 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Partial sequence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3565
FT                 /product="Copia-3_DBp-I_1p"
FT                 /note="Gag, integrase, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="EVNLLNIDDLLTILLLYSIPEEYEQFRIAIETQENLI
FT                 STEALKIKLLDEYEARNRNPSESTPGALLVHKKYNPSKPKQLSTNQKFKFK
FT                 CYSCGKVGHRAAECRSKPMKNQSESMYINIANYTNSDCSNWCLDSGATSHM
FT                 CSQKNMFETLEPAEGSKLRLANDEATDIKGCGSVQFSPNNKFTASLKNALY
FT                 VPDLRTNLLSVSKICDHGFNVIFKKEKAEVVRAKGGELVFTAPRKLDLYQI
FT                 EETHESSQIAISKQNSIKEWHERFGHLNEPDLKELIGKGKVQGAKVNLKES
FT                 LPICEICIKGKQSQKPFPVSNSRARDVLELIHSDVCGPMRVNSHGGSRYFL
FT                 TFTDDFSKWCELYTIKSKSEVFQKFKEFKNYVERRTGKKLKTIRSDNGTEY
FT                 TNNEFKNYLAAQGIKHEYSVEYTPQQNGTAERKNRTLVEMARCLMLQAALP
FT                 ASYWAEAVNTANYIRNRCPSRSLCGETPFKLWNNRIPVVKHMQKFGQIAYS
FT                 LDKRSKSKFSSKSRKCVFVGYCSDAKAYRLYDVETKTLIKSRDVVFTHLFG
FT                 HDYKYEDFMEFPINIDIEPVAVDRPENDDPDDNDGSQTEDPEPEDPEPDDE
FT                 QPEPEILMKRGRGRPKKILTGKPGRPKLMYNQIIADRIDTSNQQPESDQED
FT                 IFYEAASLAMNSKELTASAALKGANAIEWKEALINEYKSLKKNNTWEVVDR
FT                 QKNHKVIETKWVLRTKYSPDGKINCRKARLVAKGFTQRKGIDYDETFSPVS
FT                 RMSSIRTLIALATELGLDVHQFDFNSAYLNGDIEEELYVSVPPEXQEILTA
FT                 NEKKMYGPEKVCKLRKALYGLKQSGRQWYKKLDCKLKELNLKPLAADQCVY
FT                 LKRERNGILIVSLYVDDLIIATNNVQMLSQLKHELSNKFQMKDLGKISYCL
FT                 GIEFKQSEDKTEFTMAQPKYIADILKRFNMENCKPVNTPINTSEKLSTEMC
FT                 PTTESEKEEMSSVPYQSLVGALMWLAVSTRPDIAFAVSALSQYNTNFGKQH
FT                 WIAAKRVLRYLKGTQNHGLFYKRSGQNLVGYADADWAANIDDRRSFTGFAF
FT                 KFASAAISWESRKQRTVALSSTEAEYMALSDSSKEAVHLRSFLSEVLGQLK
FT                 TTVIHNDNQGAGQLACNPVFHKRTKHVDIRHHFIRELVEEGTISVNYISTT
FT                 EMPADILTKGLGASKHNTCKTSLGVCPAD"
XX
SQ   Sequence 3767 BP; 1312 A; 809 C; 820 G; 822 T; 4 other;
     cgaagttaat ctgctgaata ttgacgatct gttaaccatc ttgctactat acagtatacc        60
     agaggagtac gaacagtttc gaattgcgat tgaaactcag gaaaacttaa tatcaacaga       120
     agcactaaaa attaagttac tagacgaata cgaggcaaga aacagaaatc caagcgagtc       180
     gacgcctgga gcattattgg tgcacaagaa gtataatccc agcaagccga aacaactaag       240
     caccaatcaa aaatttaagt ttaaatgtta cagctgtgga aaagtcggtc accgtgcagc       300
     tgagtgcaga tcaaagccaa tgaagaacca gagcgaaagc atgtacatca acatagcwaa       360
     ttatacaaac agtgattgca gtaactggtg tctagactct ggagcaacgt cacacatgtg       420
     ctcacagaaa aatatgttcg agaccctgga gccagctgaa ggctcgaagc tcagactggc       480
     aaacgatgag gccacagata taaaaggatg tggatccgtg cagttctccc caaacaacaa       540
     gttcaccgcc agcctgaaaa acgcactcta tgtgccggat ttaagaacca atctcttatc       600
     ggtctcaaaa atatgtgatc acggcttcaa tgtaatattc aagaaagaga aagctgaggt       660
     agttagagcc aaaggaggag aattagtttt taccgctcct cgcaagttgg acttgtacca       720
     gatcgaggaa acacacgaaa gcagccagat cgctataagt aagcaaaaca gcatcaaaga       780
     atggcatgag cgtttcggcc atctaaatga gccggatctg aaagaactga tcggaaaagg       840
     caaagttcaa ggagctaagg taaacctaaa ggagagtctc ccaatttgtg aaatatgcat       900
     caaggggaag cagtcccaga agccgttccc agtatcgaat tcaagggcaa gggatgtact       960
     agaattaatc cacagcgacg tatgcgggcc catgcgagta aacagccacg gaggcagccg      1020
     ttattttctg acatttacag atgacttctc gaaatggtgc gagctctaca ctatcaaaag      1080
     taaatcagaa gtgttccaaa aatttaaaga attcaagaac tacgtagaac gacgaactgg      1140
     aaagaagcta aaaacaatca ggtcagataa cggcacagaa tacaccaata atgagttcaa      1200
     aaattacctt gcagctcaag gaataaagca tgagtattcc gttgaatata cacctcaaca      1260
     aaacggcaca gccgaacgta aaaaccgtac ccttgtagaa atggctcgct gtctcatgtt      1320
     acaggctgct ctgcctgcga gctactgggc cgaagcagta aacacagcta actacataag      1380
     aaacagatgt ccttcaagaa gcctatgtgg agaaacgcct ttcaagctgt ggaacaatcg      1440
     catcccagtt gtgaagcata tgcagaagtt tggtcaaatt gcttactcac tggacaaacg      1500
     atcgaagagt aagttcagct caaaatccag gaaatgtgtt ttcgttggat actgcagcga      1560
     tgccaaagct tataggctgt atgatgtaga aaccaaaact ttaattaaaa gccgagatgt      1620
     cgtttttaca cacttatttg ggcacgacta taagtacgag gattttatgg aattcccaat      1680
     caatatcgac attgaaccag tagcagttga tcgaccagaa aatgacgacc cagatgacaa      1740
     cgacggcagc caaacagaag atcccgagcc agaggaccct gaaccagatg atgaacaacc      1800
     agaaccggaa atattgatga aacgtggacg cggaagacca aagaagatat taacaggcaa      1860
     accaggaagg cccaagttaa tgtacaatca aataattgca gaccgaatcg acacatcaaa      1920
     ccagcagccc gagtccgatc aagaagacat attctatgaa gccgcctcac ttgcaatgaa      1980
     ctcaaaggag ctaactgcga gcgcagctct taaaggcgcg aacgccatcg aatggaagga      2040
     ggcattgata aacgagtaca agtcattgaa aaagaacaat acatgggagg ttgtcgatcg      2100
     tcagaaaaac cataaggtta tcgaaacgaa gtgggtgcta cgaacaaaat attcgcccga      2160
     cggaaagata aattgtcgaa aagctcgatt ggtcgcaaaa ggatttacac aacgcaaagg      2220
     tattgattac gacgagacct tttctccagt atcccgaatg agctcaataa ggacattaat      2280
     agctttagcc acggaactcg gattggatgt tcaccaattc gatttcaaca gcgcctattt      2340
     aaatggggac atcgaggaag aactttacgt cagcgtccca cctgagktcc aggaaatatt      2400
     gacagcaaat gagaagaaga tgtatggccc cgagaaagtt tgcaagttaa gaaaggcact      2460
     atatggtcta aagcagagcg gtcgccaatg gtacaaaaag ctggactgca aactcaaaga      2520
     actgaatctt aaaccactcg cagccgatca gtgcgtgtac ttaaaacgtg aacgaaatgg      2580
     gatcctgata gtatcgcttt acgtagacga cctcataata gcaacaaata acgtccaaat      2640
     gctttcgcag ttgaagcatg aattgtctaa caaattccag atgaaagatt tgggcaagat      2700
     atcgtattgt ttgggcatag aatttaaaca aagcgaagac aagacagagt tcaccatggc      2760
     ccaaccaaag tatatagcag acatcctgaa acgtttcaac atggaaaact gcaagcctgt      2820
     aaatactcca attaatacaa gcgaaaaatt gtctacagaa atgtgtccaa ccacagaaag      2880
     cgaaaaggaa gaaatgtcta gtgtgccata tcagagtttg gtaggagcct taatgtggtt      2940
     ggcagtatca acgcgccctg atatagcgtt cgcagtgagt gcactaagcc aatataacac      3000
     aaattttggg aaacagcact ggattgctgc aaaaagggta ttacgctact taaaaggaac      3060
     ccaaaaccat ggcttgtttt ataaacgaag tggccaaaac ctagtaggct acgcagatgc      3120
     tgactgggcc gccaacattg acgatcgcag atctttcaca ggttttgcct tcaagttcgc      3180
     aagtgcagca atatcctggg aaagtagaaa gcaacggacg gttgcattgt caagcacaga      3240
     ggcggagtac atggccctat cagactcatc aaaagaagcg gttcacctta gaagtttcct      3300
     tagcgaagtt ttggggcaac tgaagacaac tgtcattcac aacgacaatc aaggagccgg      3360
     tcaacttgct tgcaaccccg tatttcacaa acgcaccaag catgttgaca tccgccacca      3420
     tttcatccga gagctggttg aagagggaac tatatccgta aattacatct caacgaccga      3480
     gatgccagca gacatattaa caaaaggact tggagcctca aaacacaaca cctgtaagac      3540
     atccttgggt gtatgtccag ccgattagca gcttaccaat tgaggggaag tattggaaat      3600
     acaattggca gcactacccg atatatatcg ggagctttgt tatttttata agtatctcct      3660
     ctaaggcctc ttcttctgtt ctgtcacctc tatcgccaac aactttgtwc twcaacacct      3720
     tcattattac aaataaatag aactattgct cagcctaaaa tacaaca                    3767
//
ID   Copia-3_DEl-I repbase;    DNA;    INV; 4693 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DEl-I;
KW   Copia-3_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4693
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7093-7093 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..4343
FT                 /product="Copia-3_DEl-I_1p"
FT                 /translation="MEKGKRNITPFNGEKYSIWKFRVRALLEENDLIKVID
FT                 EEPSDKESEEVKRAERNAKSLIIEYLSDSFLVFANNGNSAKEIFKNLDTIY
FT                 ERKSLASQLSLRKQLLSLKLKGDTPLVNHFRLFDDLVTELVAAGAKIDEMD
FT                 KVSHLLLTLPTSYDGVITAIETLSESNLTLAFVKTRLLDHEIKLKGAGKDT
FT                 SAKVLQAIGNREPRDNTYKNKITKFVKKQFQNKSKPKLKCFHCGKLGHIKK
FT                 DCFSLKRQAGGNQNVHVQSNARERQAQMATATQPERSFAFMMKLANSSEKI
FT                 DGVDFILDSGASDHIVNDITLFSEYENINPSVAIEIAKRGEFVYATAKGLV
FT                 SLNSSGKNITLQNVLYCKEIPHNLLSVKKMLDAGMSVEFNPDGIKVIKNGN
FT                 LAFEGICKYNVPIVKFYLNSKVYTSKILNDAEYRLWHERLGHISVGKFLEI
FT                 KRNSLFEDIELIKNVQLNRNELCEACINGKQSRLKFEKSKNKENIDRPLFV
FT                 VHSDVCGPITPSTIDNKNYYVVFIDQFTHYCVTYLITYKSDMFFVFKDFVA
FT                 KSEAHFNLKMVNLYIDNGREYLSNEMREFCVEKGISYHLTVPHTPQLNGVA
FT                 ERMIRTITEKARSMINCTKLNKSFWGEAVLTATYLVNRSPSRALGNIRKTP
FT                 YEMWHKKKPILKYLKIFGSTVYALNKVHKRKFDDKSIKTILVGYEPNGYKL
FT                 WNEESRKFVIARDVVVDEKSIKSMTLNENDSVVKHNDVSRSHDSQIGENEE
FT                 LVFPSQEMNESMDSKSGENSNENSTCLENTDPVVGTGDNIQENENQQVRRS
FT                 ERNKDKPKLSYRFLEKCLMNTQLCLSDIPNTYEEIKFRDDRTLWEEAIQDE
FT                 LNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNFLKYKARLVARGFT
FT                 QEYMIDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLNGTLKDE
FT                 IYMKVPKGLNQYDGNKVCKLNKAIYGLKQAARCWFEVFESALKQFGFQNLE
FT                 VDRCIYILNKGDISKNIYILLYVDDVVIATSNSESMSKFKTYLSSTFQMTD
FT                 LCEIRHFLGIKIDRKDDQICLSQSAYIKNVLKKFNMEDCNPVSTPLPSKLN
FT                 YEDLQAEESCEAPCRNLIGCLMYIMLCTRPDLSTSISILSRYTNNNNKELW
FT                 QCLKRVLRYLKGTVDLKLSFKRNLKVDNILIGYVDSDWAGNETDRRSTTGY
FT                 IFKMFGNCSISWSTMKQKSVAASSTEAEYMALFEGVREALWLKSLINEIKL
FT                 KLTGPIDIFEDNQGCISIANNPTCHKRSKHIDIKYHFTREQIENKLICVKY
FT                 ISTDFQLADILTKPLPTARFTALRDQMGLTGPSP"
XX
SQ   Sequence 4693 BP; 1739 A; 681 C; 901 G; 1372 T; 0 other;
     ggttatgggc ccagtcacaa tttgcagcta agtgctatag aaaaatgctt taattgttac        60
     cgaataataa aagtgaaata aaaaaaaaag tgaaacaaat taaaacttaa atcaagtcta       120
     aacaaaataa ttactattga aatttgtgct tataagtgaa caacgtacat atacatatat       180
     gtataacgac gcaccaaatt ggcgcacatt tttcattttt cagtgcgagt gttagagcag       240
     accagcaaca aaaaaattct gagaagcgca tagcaaccga aaagaagaac agttattctc       300
     ggaagatgga aaagggaaag agaaatataa caccttttaa cggggaaaag tattccatat       360
     ggaaatttag agtcagggct ttgttagagg aaaacgattt gataaaagta attgatgagg       420
     aaccaagtga taaggaaagt gaggaagtga agcgagcaga gagaaatgca aagagtctta       480
     taattgaata cttgagtgac tcttttttag tgtttgccaa caatgggaac tcggctaagg       540
     aaatttttaa aaatttggat actatttacg agcgtaaaag tctggcatct caactttcat       600
     tacgcaaaca actattgtct ttaaaattga agggtgatac tccgctagta aaccactttc       660
     gtttatttga tgatttggtt actgagttag ttgcggcggg agccaagata gatgaaatgg       720
     acaaagtgtc ccatttgctt ctaacacttc caactagcta tgatggggta ataacagcga       780
     tagaaactct atctgagagc aatttaacat tagcctttgt aaagactcgg cttctagatc       840
     acgaaattaa actaaaaggt gctggcaagg acacaagtgc aaaagtgttg caggctatag       900
     gcaatcgaga gcctagggat aacacataca aaaacaaaat aacaaaattt gtgaagaaac       960
     aatttcagaa taagtctaag cctaagttga agtgttttca ttgcggcaaa ttaggccata      1020
     taaagaaaga ctgtttctcc ttaaaaaggc aggcaggtgg caaccagaat gttcatgtcc      1080
     agagtaatgc tagagagaga caggctcaga tggcaacagc aacgcagcca gaacgctcgt      1140
     ttgcatttat gatgaaatta gctaattcca gtgaaaagat agatggcgta gattttatat      1200
     tagattcagg ggcgtcagat cacatagtaa acgacataac tctgttttcc gagtatgaga      1260
     atataaatcc aagtgtggcg attgagattg caaagcgtgg agaatttgtg tatgctactg      1320
     cgaaaggact agttagcctt aacagttctg gaaaaaacat tacattacaa aacgtgctgt      1380
     actgcaagga aatcccgcac aatttactat ccgtgaagaa gatgctagat gctggaatgt      1440
     ccgtcgaatt caatccggat ggaataaaag taatcaaaaa tggtaacttg gcatttgaag      1500
     ggatatgtaa atataatgta ccgattgtga aattttattt aaatagtaaa gtatatacat      1560
     ccaaaatttt aaatgatgca gaatatcgct tgtggcatga aaggttaggt catattagtg      1620
     taggaaaatt cttagaaatt aaacgaaaca gcttgtttga agatattgaa cttataaaaa      1680
     acgtacagct aaatagaaat gaattatgtg aggcatgtat taacggaaaa caatctaggc      1740
     taaaatttga aaaatctaaa aacaaagaaa atattgaccg cccattgttc gtagttcatt      1800
     ctgatgtatg tggtccgatt acgccctcaa ctattgataa taaaaactac tatgtagtat      1860
     ttattgatca gtttacacat tactgtgtga catatctaat aacttataaa tcagacatgt      1920
     tttttgtatt caaagacttt gtggcaaaaa gtgaggctca tttcaactta aaaatggtaa      1980
     atctatatat tgataatggc agggaatacc tctctaatga aatgcgtgaa ttttgtgtcg      2040
     aaaaaggtat cagctatcac ttaacggttc ctcatacccc acaattgaat ggtgttgcag      2100
     agcggatgat taggacaatc accgaaaaag ctcgctctat gattaactgt actaaactta      2160
     ataaaagttt ttggggtgaa gctgttttaa cagcaactta tttagttaat aggtccccaa      2220
     gtagagcttt gggaaatata agaaaaacac catatgagat gtggcataaa aagaagccaa      2280
     tattaaaata tttaaaaata tttggatcga ctgtatacgc actaaataaa gtgcataagc      2340
     gaaaatttga tgacaaatcg atcaagacta tactcgtcgg gtatgagcca aatggctata      2400
     aattgtggaa tgaggaatcg agaaaatttg tgatagctag agatgtagtg gtggacgaaa      2460
     aaagcataaa atctatgact ttaaatgaaa atgactctgt ggtaaaacat aatgatgtta      2520
     gcagaagtca tgattctcaa attggagaga atgaagagtt agtttttcca tcacaggaaa      2580
     tgaatgaatc aatggattca aagtctggtg aaaactcaaa tgaaaattcc acttgtctcg      2640
     agaataccga tccagtagtt ggaactggtg ataatataca agaaaatgaa aatcaacaag      2700
     tcagacgcag tgagagaaat aaagataaac caaaattatc atatagattt ttagaaaaat      2760
     gtcttatgaa tacccaattg tgtttaagtg atattcccaa tacatatgag gaaattaaat      2820
     ttcgcgatga cagaaccttg tgggaggaag ccattcaaga tgaactaaat tctcattttg      2880
     taaataatac atggtgctta gtgcaaaggc ctatggataa aaacatagta gattgcaagt      2940
     gggtttttag tttaaagcaa gacgaaaatg gtaattttct aaaatataag gcaagactgg      3000
     tagcaagggg ctttacccaa gaatatatga tagattatga cgagaccttt gcacctgttg      3060
     cacgaatttc tagtttcaga tttcttttag cattttctaa tcaatataat ttactgattc      3120
     atcatatgga tgtaaaaaca gcatttttaa atggaacttt aaaggatgaa atttatatga      3180
     aggttccaaa aggtttaaac cagtatgatg gaaataaagt atgtaaacta aataaagcta      3240
     tttatggcct taagcaagct gcgcgatgct ggtttgaggt ttttgaaagt gcacttaaac      3300
     aatttggatt tcagaatcta gaagtagacc gatgtatata tattttaaat aagggagata      3360
     taagtaaaaa tatatatata ttattatacg ttgacgatgt ggtaattgcc accagtaatt      3420
     ccgaaagtat gtctaaattt aaaacttatc tttcaagtac gtttcaaatg actgacttat      3480
     gtgaaatacg acatttcctt ggtataaaaa ttgatcgaaa agatgatcaa atttgtctca      3540
     gtcaatctgc atatattaaa aatgtcttaa agaaattcaa tatggaagat tgcaatccag      3600
     ttagtacccc tcttccaagc aaactaaatt atgaggactt gcaagctgaa gaatcatgtg      3660
     aagcaccatg taggaattta attggctgtt taatgtacat aatgttgtgt acacgtccgg      3720
     atttgagtac atcaattagt atcttaagcc ggtatactaa taataataac aaagaattat      3780
     ggcaatgtct taaacgagtt ttaagatacc taaaaggaac tgttgactta aagttatcgt      3840
     tcaaaaggaa tcttaaagtg gataatattc ttatagggta tgtcgattct gattgggctg      3900
     gaaatgagac tgataggaga agtactacag gatatatatt taaaatgttt ggaaattgtt      3960
     caatatcctg gagtactatg aaacaaaaat cagttgctgc ttcatctacc gaagccgaat      4020
     atatggcctt atttgaaggt gttagagaag cattatggct aaagtcatta ataaatgaaa      4080
     ttaaattaaa attaactggc ccaatagata tttttgaaga caaccaaggt tgtattagta      4140
     tagccaataa tcctacttgc cacaagagat ctaagcacat agatatcaaa tatcatttta      4200
     ccagggaaca aattgaaaac aaactaatct gtgtcaagta tatttccaca gatttccaat      4260
     tggctgatat tttaacgaag ccactaccaa cagctaggtt cactgcactg cgagaccaaa      4320
     tggggctaac tggaccttca ccctgaacct ttatatggag tttttgctaa tttataattc      4380
     acctttaaac caagccaaac tggatctctt ggaatatata tatatattta acaataatca      4440
     aaccaaaata atttctagtc taaccattac tgtttatata agcgaatctt gttaatttat      4500
     gtttttgaat gatctgattg ggttttactg ggtttcccca attctttgca gcaaatgctg      4560
     gatcagaaaa aaaaaaaaga gtccccagag aagaaaaaaa aaaatattac aaccatttga      4620
     aaatgcacaa actcgtcaga aaattatctt ttgttattcc ttaaattgta tcagtgtaac      4680
     ttttgaggtg gcg                                                         4693
//
ID   Copia-3_DEl-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-309
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7094-7094 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 309 BP; 92 A; 55 C; 62 G; 100 T; 0 other;
     tgttgagaat accaaaagtc acacttatac atatacacat ggtgtgtgtg tgggaagggg        60
     atgaacaatg aagatctcag agagaggcaa agccctctcc tctctttgtt ctctccctct       120
     ctttcaaaga acgtttttgt ttccttttgt atgcacatgc gtacccttgc cacttacttg       180
     aagacaacga gagcgtgcgg ttgtgaaata aaaattaact aaaaagacaa ttaaagtgtt       240
     ttactatttg gcaaatcggg ctggtgtgtt cctggagttt gtatatacat taattatata       300
     tattcaata                                                               309
//
ID   Copia-3_DEu-I repbase;    DNA;    INV; 4165 BP.
XX
AC   .
XX
DT   16-DEC-2011 (Rel. 17.06, Created)
DT   16-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DEu_;
KW   Copia-3_DEu-LTR; Copia-3_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4165
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 857-857 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1461-1991] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1443..4127
FT                 /product="Copia-3_DEu-I_2p"
FT                 /translation="MLSKIHVQPFPRKTESRASEILELIHADVCGPFSTRS
FT                 LGGNRYFLTFIDDKSRRIFVYFLKGKDEVFSKFVEFKELVERQTGKLLKCI
FT                 RSDNGKEFVNATFDKFLKANGIRRQLTIPYSPQQNGVAERANRTLVEMARC
FT                 LLTQSCLAESLWGEAIYTAVYLRNRAPTNALRDMTPMEAWNGKKPSISHFK
FT                 VFGSFAVALDKGHNRSKFQKKGKEYRMVGYSRTAKGYRLYDPSTGQVIEKR
FT                 DVLFDERADNLAKDAGFVSFDLPQASVSSDGQLEDERDNCSNDVSSDGKVN
FT                 PSLQEYASSDDESSYEKDEVGIKNGRSSDEFISAEEVDSAEDEDTGGDEHN
FT                 AQDGKRVGPGRPKLIRTGKPGRPRKQYNVLGAAIGSNVFVPVSYEEAIRCP
FT                 DSELWLEAMNREYEALMNNQTWQIVDLPKTERAIGCKWIFTVKRDAIGQVQ
FT                 RYKARLVAKGCSQQYGINYAETFSPVCRMESIRFILALAAQLKLYLHQMDV
FT                 CTAYLNSDLTDTVYMKQPSGFLAKDHADGVLLLKKAIYGLKQSGREWNCKL
FT                 DGVLRSIGFSPCTNEPCLYMNTSGQHLSLILVYVDDLIIACQDKNDLIGIK
FT                 SKIAQSFECVDHGQLHMFLGLEVHREDELGEIRLSQSLYIENLLQRHGIKE
FT                 CRAAATPLDAGFQITCEKEGCETVNEQGYKAVIGELMWLALSSRPDILHSV
FT                 SKLAQRNKDPHSEHWTGVKHVLRYLASTKDLKLHYKNCNEALTGYVDADWG
FT                 GDKTDRKSYTGYLFYLAGGPISWKSEKQRSVALSSTEAEYMALSSACKEAI
FT                 SLRRLILEIGCGEPGTSTIMNTDNLSAQQLAKNPVHHSRSKHIDIRYHFVR
FT                 DVVKEGQIVLKYLSTKEMIADILTKNLQKQKHCELTKKLSLY"
XX
SQ   Sequence 4165 BP; 1304 A; 807 C; 1096 G; 958 T; 0 other;
     ataggttatg ggcccaggac acacatacat agatatacat gtataggcca cgcggttttt        60
     gaggaaaaga aatttcaata agttgtgaaa tagaagcggc gtttgcatta cgagtgcaag       120
     cagtgagttg gaattggaat cggatcgcta caaagaaagc ttcagcatga gtgcgcttta       180
     ccaaatagac aaattggagg aaaagaatta tgattcttgg catatacaga tgcgcagcgt       240
     actggtacac gcggagctgt gggacgtggc gtcaggcgag ttaaaactgg aagatgccgg       300
     tgaaaactca aattggccaa gccgtgacag taaggctctg gccatgatca ccctcagcgt       360
     taaaacttcg cagctgagct acataaaaac gtgtacgaca tcgtttgagg cctggacaaa       420
     actgagggag gtgcatcaac caagtgggcc agtaagaaag gtatcgctct acaaaacgtt       480
     gctgagtcta aagatggagg atggccaaaa tgtttccagt cacctgaatg cgttcagcga       540
     ggttttggat cagctatcgt cggtgggaat tgagataagt gaggagcttc gagctataat       600
     cctactatcg agccttccaa aggagtacga aaattttgtg gtagccatcg agacgcgcga       660
     cacattgcca gagttcgagg tactgcgaat caagatcaag gaagagggag agagacgatc       720
     tcagtctgcg cgagcgacat gcatgcacag gcttttgttg caaacactac aaagccagtt       780
     accaaaaaga gttggaagaa tgtcatttgc tataactgtg gcaagcgagg gcatgtcaag       840
     gccgaatgtc gatcggatgg atccgagaag aagaagcagg ctccaactgt tcaaaaacag       900
     tgcagcttat tgggagctct ggatgcggat agctttggcc gcacaaagtg gtgcttggat       960
     agcggagcta caagccatat gtgctgtaac gagagtttgt ttacaaccct ggagaagcac      1020
     accgagacga ttggattagc tggagacgga tttctgaagg cggagggaaa aggagtggtc      1080
     aagataaaga cggatcgata cacccttgta ctaaacgacg tactatttgt tcctacgatg      1140
     aagggaaact tcatgtccgt aagtcaaacc gtttctaaag gcaatttggt gcattttaac      1200
     gaaaggcatg caaagatcat ccaaaacggt gagtgtatat tccagataaa gaaaactgga      1260
     aatctatata cattcgaggg aaagtccaat cagtgctatg cggctgccag tgccgatggt      1320
     aatttatggc acatgcgata tggtcacatt aattatcgca gtctggctga tatcgtgaag      1380
     aagggcatgg ttcgtggaat ggaaggttgt agtttaccgc aaaatacatc ctgtaagact      1440
     gcatgttgag caaaatacat gttcagccat ttccacgtaa aactgaaagc cgagccagtg      1500
     aaatattaga acttattcat gcagacgtat gcggcccttt tagtacaaga tccctgggtg      1560
     gaaatcgata ttttctgacg tttatcgatg acaagtcacg tcgcatattt gtttactttc      1620
     tgaaaggcaa agacgaggta ttctctaagt tcgtagagtt taaggaactc gtggagaggc      1680
     aaactggaaa gcttctgaag tgcatacgaa gcgacaacgg aaaggaattt gttaatgcaa      1740
     cctttgacaa gtttctcaaa gcgaatggga tcaggcggca actgacaatc ccgtacagcc      1800
     cacaacaaaa cggagtagca gagagggcta accgtacgtt agtggagatg gcccgatgct      1860
     tgctgacgca atcttgcctg gcggaatcct tatggggaga ggctatatac acagccgtgt      1920
     atctgcggaa cagagcgcct acgaacgcgc tgagagatat gacgccgatg gaagcatgga      1980
     acggtaaaaa accatctata tctcatttta aagttttcgg ttccttcgca gttgcgcttg      2040
     ataagggtca taaccgaagc aagttccaga aaaagggaaa agaataccga atggtcggtt      2100
     attctcgaac agccaaaggg tatcggctat acgacccaag cacaggacaa gtcatcgaaa      2160
     agagggacgt acttttcgac gagcgagctg ataacctggc gaaagatgct ggattcgtat      2220
     cgtttgatct accacaagcc agtgtgagtt cagacgggca attggaggat gagagggaca      2280
     actgcagcaa cgatgtaagc tcagatggca aagtcaaccc cagtttgcag gaatacgcca      2340
     gttcggatga cgaaagctca tacgaaaaag acgaggtcgg cataaaaaat ggtcgcagca      2400
     gcgacgagtt catcagcgca gaggaggtcg atagcgcaga agatgaggac accggagggg      2460
     atgagcacaa cgcacaggat ggaaaacgag tgggtcctgg cagacctaag ctaattcgca      2520
     cgggcaaacc tggacgcccg cgaaagcagt acaatgtctt aggagcggca attggcagca      2580
     atgtattcgt tccggtaagc tacgaagaag caattagatg tcctgattcg gaattatggt      2640
     tggaggcgat gaatcgagag tacgaagctc taatgaacaa ccagacatgg cagatagtag      2700
     atctccctaa gacagaacgc gctataggct gcaaatggat ttttactgtg aagagggatg      2760
     ccattgggca agtgcagcgg tataaagcac gcctagtagc caaaggctgt tcacagcagt      2820
     atggaattaa ttatgctgag actttttcac ctgtttgtcg gatggaaagt attcgtttca      2880
     tacttgccct ggctgcacag ttaaaattat atttgcacca gatggatgtc tgtacggctt      2940
     atctaaatag cgatttaaca gacaccgtgt acatgaaaca accaagcgga tttcttgcca      3000
     aagatcacgc ggacggcgtg ctgttgctaa agaaggcaat ttacggcctt aaacagtctg      3060
     gcagagagtg gaactgtaaa ttggatggag ttctgcgaag tattggtttt agtccatgta      3120
     caaacgagcc atgtctatac atgaatacaa gtggacagca tctatcactt attcttgtat      3180
     acgtggacga cctgatcata gcctgtcaag ataaaaatga tctcattggc ataaaaagca      3240
     aaatcgccca atcatttgaa tgtgttgatc acggacagtt gcacatgttt cttggactgg      3300
     aagttcatcg agaagacgaa ctgggcgaga taaggctaag ccagagcctg tatattgaga      3360
     atctgcttca gcggcacggc attaaggagt gtagagcagc tgcaactcca ctggatgcag      3420
     gattccaaat aacatgcgag aaagagggat gcgaaacagt caacgagcaa gggtataaag      3480
     cggtcatagg cgaactcatg tggctggcgc tatcatcaag accagatatt ttacattctg      3540
     tttctaagtt ggcgcagcgc aacaaggacc cccacagtga gcactggact ggagtaaaac      3600
     atgtcctgag gtatttggca tcgacaaagg acctaaaatt gcattacaag aattgcaatg      3660
     aggctttgac tggttacgtg gacgctgact ggggaggcga caaaacagat agaaaatcat      3720
     acactggata tctattctat ctggcaggag gaccgatttc gtggaaatca gaaaagcaac      3780
     gcagcgtagc tctcagcagt acggaagcag aatacatggc gttatcatcc gcatgcaagg      3840
     aggcgatttc attgagacga cttatattgg aaatcggttg cggagaacct ggaacatcga      3900
     ccataatgaa tactgacaat ttaagcgcgc agcagttggc aaagaatcct gtacatcatt      3960
     caagatcgaa gcacatagat atcaggtatc acttcgtaag agatgttgtt aaggaagggc      4020
     agattgtttt gaagtatctt tcaactaaag agatgattgc agacatatta acgaaaaacc      4080
     ttcaaaaaca aaagcattgt gagcttacca agaagttaag tttatattga aatattaaat      4140
     gggagcttac attgaggaag ggtat                                            4165
//
ID   Copia-3_DEu-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   16-DEC-2011 (Rel. 17.06, Created)
DT   16-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DEu_;
KW   Copia-3_DEu-I; Copia-3_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-150
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 858-858 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 150 BP; 48 A; 33 C; 21 G; 48 T; 0 other;
     tgaaactatc atagcattgt aatctctagc atataatttg tatcgatagt aatctctgca        60
     gtcaccagaa gtatcgaata aagttcattc cttttgtatc tactcaacca agccggacgt       120
     ctttttctct caaacgggaa taactcaaca                                        150
//
ID   Copia-3_DGri-I repbase;    DNA;    INV; 3381 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DGri_;
KW   Copia-3_DGri-LTR; Copia-3_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3381
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1291-1291 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1540-2070] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..3357
FT                 /product="Copia-3_DGri-I_1p"
FT                 /translation="MNTSMSSIEKLDDQNYSAWVVQMKSVLVYSELWQYVC
FT                 GRVVKNENDSAEQKAIFDARDEKALASIMLCIKASQINNVKNCQTSASAWN
FT                 TLKEIHMPMGPARRVTLLKQLLRLRLVESGSMAEHIHKFADLVERLSEIGF
FT                 LMVEECLSILLLSSLSDGYDNFVIAMETRDTLPSLSVIKIKLLEESERRRA
FT                 DGQTESNGETKMFSTRIDNRANRNTDESNGKVNRRSAQQKKATQAGCWTCG
FT                 RRGHIAANCRAKDSSEKEQGKKNKESKKSYSVFAAARNPSSGGFTKNTWCL
FT                 DSGATAHLCNDRSCFIELREHKEKIILAGNNYIQAYGRGKARIKWKNNTID
FT                 LTDTLYVKDLQCNFVSVSKVVQKGFSVKFGQKSARIENRRGDVILVAKEQQ
FT                 DLYLFNADEQKCFSAQANLTDILKWHKRLGHLNFVSLNKMIKKNLVHGLKA
FT                 RQCSDLKEHVCETCAKCKISVKRFPKKSETRAEGTLDLIHTDICGPMRKCS
FT                 VGGARYFGTFIDDRSRFVHVCFMKTRDEIFEKFKEYKAFAEKQTGRKIKCL
FT                 RSDNGREYLSGDFEKYLVSNGIKRQLTVPYTPQQNGVAERANRTLVEMARS
FT                 MIVHAGLKEDFWAEAINTAAYLRNRSETSTLEDMTPYESWSGKKPSVSHLK
FT                 VFGTKAIVLNKKYNKKFLPKGEVRVLVGYSATAKAYRLYNPDSRKVIEARD
FT                 VIFLEGEMTDDSVKDRISLCNNDVTLIMKNVEDEPVSLHSGDQTEDRENSE
FT                 RDDEVPNISTDGDIGDDEEIESCEAPGKRGPGRPKKVRTGQPGRPRKQYNI
FT                 LNVMTTDDVAAPASVNAALSSDHASEWRASMQKEIDSLQENKTWELIDLPK
FT                 GEKAIGCKWVFAVKRDEHGKVVRLKSRLVAKGCAQQYGVNYNETFSPVARY
FT                 STIRLLIALAVENGMYMHQIDVSSAYLNSELRDVVYMRQPEGFANQDFPNR
FT                 VLRLKKSLYGLKQSGREWNEKLNTVLIRIGFTPCPSEPCLYIRREASKLNV
FT                 IVVYVDDLIVASTSKEDLNCVKERISQEFDVVDGGQLKHFLGMEIDREGET
FT                 GSVTVGHKYFIEKK"
XX
SQ   Sequence 3381 BP; 1100 A; 602 C; 893 G; 786 T; 0 other;
     agttataata ggttatgggc ccagaacacg gaaaattcag ctcgtagaaa atacagtgaa        60
     ttgttctgag gattacttgt agaaggtgaa tgagagcatt ctggactttc ttggacaagt       120
     gtgataactg tgtggttaaa gaaaatgaat acctcgatga gttcgatcga gaagttggac       180
     gaccagaatt atagtgcctg ggtcgttcaa atgaaaagcg tactcgtgta ttcagaacta       240
     tggcagtatg tgtgcggtcg tgtcgtgaaa aacgaaaatg acagtgctga gcaaaaggca       300
     atatttgatg caagagacga aaaggctctg gcaagcataa tgctttgcat aaaggcatcc       360
     caaataaata atgtgaagaa ttgccaaaca tcagcaagtg cctggaacac cctgaaagaa       420
     attcatatgc caatgggacc tgcgcgtcgt gtaactttgc taaagcagtt gttacggcta       480
     agattggtag agtcgggtag tatggcagag cacatacata agtttgcaga cttagtggaa       540
     agactaagcg agatcggctt tttaatggtc gaagagtgtt tgtctatatt gttgttgtcg       600
     agtttgtcgg atggatacga taatttcgtg atcgccatgg aaactcgtga cacgttgccg       660
     tcgctaagtg tgataaaaat caagttactc gaagagagtg aacggcgtag agcagacggg       720
     cagacagagt caaacggaga gacaaaaatg ttctcgacgc gtatagacaa tcgagcaaac       780
     agaaatacag acgaaagtaa cggtaaagtg aatcgtagaa gtgcgcagca gaaaaaggca       840
     acacaggccg gctgctggac atgtggtcgc cgtgggcaca ttgctgcaaa ttgtcgcgca       900
     aaagacagct ccgaaaaaga gcaaggcaag aaaaataaag agagtaagaa atcgtactca       960
     gtgtttgcag cggcaagaaa cccaagtagt ggtggtttta cgaagaacac gtggtgtcta      1020
     gacagtggcg ccacagcgca tttgtgtaac gacagatcgt gcttcataga attaagagag      1080
     cacaaagaga aaattatttt agctggaaat aattacatac aggcatatgg gcgtggaaaa      1140
     gcacgcataa agtggaaaaa taacactatt gatttgaccg atacattata tgtgaaagac      1200
     cttcaatgca actttgtgtc agtatcgaaa gtagtccaaa agggattcag tgttaaattt      1260
     gggcaaaaga gtgcgcgcat tgaaaatcgt agaggcgatg tgatcttagt tgctaaggag      1320
     cagcaagact tatatttgtt caacgcagat gagcaaaagt gtttcagcgc gcaagctaat      1380
     ttaacagaca tactgaagtg gcacaagcgg cttggtcatt taaattttgt cagtctgaat      1440
     aaaatgatta agaaaaattt agtgcacggc ttgaaggcca ggcagtgttc ggacttaaaa      1500
     gaacatgtat gtgaaacatg cgcgaagtgc aaaataagtg taaagagatt tccaaagaaa      1560
     tctgagaccc gcgccgaagg cacactagac ttgatacaca cagacatttg tggcccaatg      1620
     agaaaatgtt ctgtaggtgg tgcgcggtat tttggcacat tcattgacga tagatcgcgg      1680
     tttgtgcatg tgtgttttat gaaaactcgc gatgaaatct ttgagaagtt caaagaatat      1740
     aaggcgtttg cagaaaaaca aactggacgc aagataaaat gtctcagaag cgacaacggt      1800
     cgtgaatatt tgagcggcga tttcgaaaaa tatttagtga gcaacggcat caagaggcag      1860
     cttactgtgc cgtatacacc ccaacaaaat ggtgtagcgg agcgcgcgaa tcgaacgctg      1920
     gtagaaatgg cacgaagcat gattgtgcat gctggtctca aggaggattt ctgggcagaa      1980
     gctataaata cggcggctta tctgcgaaat cgctcagaga catctacgct ggaggatatg      2040
     acaccatatg agtcatggtc aggcaaaaaa ccgtctgtaa gtcacctaaa agttttcggt      2100
     acaaaggcta tcgtacttaa caagaagtac aataagaaat tcctaccaaa aggtgaggtg      2160
     agagtactag ttggttactc tgcaacagct aaggcatacc gattgtataa tcccgattca      2220
     cgaaaagtaa tcgaagcaag agatgtgata tttcttgaag gtgaaatgac agatgacagc      2280
     gtaaaggaca gaatctcgtt gtgtaataat gatgttacac tgatcatgaa gaatgtcgaa      2340
     gatgagcctg taagtcttca tagtggcgat caaactgagg atcgcgagaa ttccgaacga      2400
     gatgacgagg tgccaaatat atctacagat ggagacattg gtgacgacga ggaaatcgag      2460
     tcatgcgagg caccgggcaa aagaggtcct ggaaggccaa agaaagtacg caccgggcag      2520
     ccaggacgcc ctcgaaagca gtacaacatt ttgaatgtta tgacaacgga tgacgtagct      2580
     gcacctgcta gcgtcaatgc agccttgagt tctgatcatg ccagtgaatg gagggcatcg      2640
     atgcagaagg agatagacag tctacaagaa aacaaaactt gggagttgat tgatctaccg      2700
     aagggagaga aggcaattgg ctgtaaatgg gtatttgcag tgaagcgtga cgagcatggc      2760
     aaagtagtac gcttgaagtc tcgactagtg gccaaaggat gcgcccaaca atatggcgta      2820
     aattacaatg agacgttctc ccctgtggcc agatattcga caatcagatt actgattgct      2880
     ctagcggtag aaaatggtat gtatatgcat cagattgacg tgtcttctgc ttatctcaac      2940
     agtgagctgc gagatgtggt ttatatgcga caaccagagg gatttgctaa ccaagatttc      3000
     cctaaccgag tcctaagact caagaagtcg ctgtacggcc ttaaacagag cggccgtgag      3060
     tggaacgaga aactaaacac cgtgctaatc aggattggtt tcactccctg ccctagcgag      3120
     ccatgtttgt acatacgtcg tgaagccagc aaactgaatg tgatagtcgt atatgtcgac      3180
     gatcttattg tggccagcac aagcaaggaa gatctgaact gcgtgaagga gcgcatatca      3240
     caggagttcg acgtagtcga tggcgggcaa ttgaagcatt tcctaggaat ggaaattgat      3300
     cgtgaaggtg aaacgggcag cgttactgtc ggtcataagt acttcattga gaagaagtag      3360
     acaaactgcg ttgaggagga g                                                3381
//
ID   Copia-3_DGri-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DGri_;
KW   Copia-3_DGri-I; Copia-3_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-259
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1292-1292 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 259 BP; 69 A; 49 C; 51 G; 90 T; 0 other;
     tgttggaaat aactgtattt gcctatgtac accgcagctt gtcttgcatt cccgttttgt        60
     agtcttaatc tgttgttgcc tgcgagcaac ggtaattgta agttccttat gatcaagacc       120
     ttcttcgatg ctatgtttaa gctattttca tgaagtaaga gtcagtcgct tttggtcgct       180
     tgaatcgcgt agtataagtc gcatgaagcg gacatatatt ctgtattaaa tacaaagctc       240
     tgaataaata taaacccca                                                    259
//
ID   Copia-3_DMel-I repbase;    DNA;    INV; 4193 BP.
XX
AC   .
XX
DT   14-AUG-2018 (Rel. 25.03, Created)
DT   14-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DMel-I;
KW   FROGGER_LTR; FROGGER_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4193
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 734-734 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. The corresponding LTR region is
CC   FROGGER_LTR. FROGGER_I is a truncated version.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(345..626,630..1706,1710..1826,1810..1950,
FT                 1954..3921)
FT                 /product="Copia-3_DMel-I_1p"
FT                 /translation="MFDLACETITVDTHKIVCNGLRGVAKTQRSAHASSPE
FT                 RKCYLYQKLVNLKMQSNDKVDVYVNSFVEIIGKLSELDIKINEELQVIMLL
FT                 TGLPENENFVVAIKTRDSLPSLEQLKIKLLEEGARREKRDDERDQSQAVYT
FT                 HSKVNSYNSKTQSENRDANSNVNSKNKKKFVRKDKNKNSFEGNCYICKKYG
FT                 HRAHDCRNKQKNEVAKDDETNNCLMHTDCGPSKQDKNTWCLDSGATSHMCC
FT                 VKGMFISFKEETASVKLAAEKYVESPGIGTVSMKVNGINLKLQNVLYVPAL
FT                 NMNFLSVSKAAEFEHSIIFGKNEAQVKNKQGQIMLRASIENNLYLFKVNSN
FT                 QINAVNSVNKNEIKWHERYGHLNFKSLKKLNDLVVGIDSKITGRNINCDTC
FT                 NKAKLCALPFPKKAETVTKCVLELIHTDICGPMNVKSLAGNRYFITFIDDF
FT                 TRKIQCIFKQKMNIRKVQNFKELVERQTGKRINRYAVIMALKYQQTININK
FT                 QFNGYLSQCGIKRQLSVPYTPRTERANRTIVEMAKSLLTHAGLIFMAEAVH
FT                 TATYIRNRCPSRTLDDRTPFEYWNNRKASVKHLRIFGSRAFALTRPKGGKF
FT                 QAKAKEYVFVGYSFTAKAYRLYDPQRRNVYELRDVKFIEGEFPTKIKETSL
FT                 NTNTNNDFQTSIIRFEPIKESMNTDQNTPEPINELAEASSTDDEEAVDDSD
FT                 EGRMFVSANDDSDDQSADDTLMAQQRRPGRPKFIRTGQPGRPKKVYQTLQY
FT                 LNYEEDEETPQSLEQALKGQYKVNWQDSMRAEYEALIANNTWSLVDLPKGA
FT                 KAIGSKWVFRIKKDKDGEIERFKSRLVAKGCGQQFGVNYWETYSPVIRYET
FT                 IRMLLAVAAEKDLHMHQIDISNAYLNSDLEEDVYLKQPQNFVDKENPGKVX
FT                 KLQKAIYGLKQSGRLWNDTLNEVLQNMGFKRSKNEACLYYKKQQNGFSYIA
FT                 VYVDDLIIISPKESDIEDIKGSIATKFDMKDGGQLSYFLGMEISREGQTGP
FT                 IKLCQKRYIENLLRRYGMQSCRLVGTPLDPGYESGCTNEKCAKVNITHFQS
FT                 LIGSLMYLAVVSRPDILHSVSKLSQRNTDPHHEDEAAAKHVLRYLCGTINL
FT                 SIVYMKTGELVKGFADADWANDKVDRKSYSGYAFLMAGSAFSWGSSKQSVI
FT                 AQSSTEAEYIALSTAAKEAVFLRRLYKRWDGSTRGH"
XX
SQ   Sequence 4193 BP; 1531 A; 758 C; 903 G; 1000 T; 1 other;
     tttggttatg ggcccaggcc ctacgcgtaa agaaatgtat tgattcgttt acaaagtatt        60
     cgtgaagtga tcaaagtgaa gtaatcaaaa ataaaacaaa gttaagagaa aaaactcgcg       120
     tctatctttt ctaattatta aaaaaaaaaa actaattaag gcaaaatgag tatatccctg       180
     cagatcgaaa agttaagtga ggacaatttc gatgtttggt gcatgtctat gcgtagcgtg       240
     ctagtcacca cagacttatg ggatgttact agtggcaaaa aagtaaggcc agtgacaccg       300
     gcagaagcct taaagtggga cgttgtaaat gaaaaggcat tatcatgttt gatcttgcat       360
     gtgaaaccat cacagttgat acacataaaa ttgtgtgtaa cggcctacga ggcgtggcaa       420
     aaactcaaag aagtgcacat gcatcgagcc cagaaagaaa gtgttacctt tatcaaaaac       480
     tcgtgaactt gaaaatgcaa agcaatgata aagtagatgt gtatgttaac tctttcgtgg       540
     aaataattgg aaaattgtcg gagttggaca taaagattaa cgaagagtta caagtgatta       600
     tgttgctcac aggcttacca gaaaattaag aaaattttgt agtggcaatc aaaacccgtg       660
     atagcttgcc atcattagaa caattgaaaa tcaagcttct agaagaagga gcgcgtcgag       720
     aaaaaaggga tgatgagcgt gatcagtccc aagctgtgta tacacattcc aaagtgaaca       780
     gttataacag caaaacacaa agtgagaacc gcgacgccaa ttccaatgtt aattccaaaa       840
     acaaaaagaa attcgttaga aaagacaaaa acaaaaattc gtttgaaggg aattgttaca       900
     tttgcaaaaa gtatgggcac cgagctcatg actgccgaaa taagcaaaag aacgaagtcg       960
     ccaaagacga cgagacaaac aactgtttaa tgcataccga ttgcggaccc agcaagcaag      1020
     acaaaaatac atggtgtctt gacagtggtg caacttcgca catgtgttgt gtaaagggta      1080
     tgttcatttc gttcaaagaa gaaactgctt cagtaaaatt agcagctgaa aaatatgtag      1140
     agtcacccgg tattggtacg gtgagcatga aagtaaacgg cataaacttg aaattgcaaa      1200
     atgttttgta tgtgccagca ctcaatatga attttttgtc agtaagtaaa gcggctgagt      1260
     ttgaacacag cattattttt ggaaaaaatg aggcacaagt aaaaaacaaa caaggacaaa      1320
     taatgttgcg cgcgtcaatt gaaaataatt tatacttgtt caaagttaac agtaatcaaa      1380
     taaacgcggt aaattctgta aacaagaatg aaattaaatg gcacgaacga tacggtcatc      1440
     tgaattttaa aagtttaaag aaacttaacg atttggtagt cggaatagac agtaaaataa      1500
     cgggcagaaa tataaattgt gatacgtgta acaaagcaaa gctatgtgca ttgcctttcc      1560
     caaagaaggc agaaacagtt acaaaatgcg ttctcgaatt gatacatacc gatatatgtg      1620
     gcccaatgaa cgtaaaatcg ttggcaggta ataggtattt tattacgttc atagacgact      1680
     tcacaagaaa aattcagtgt attttttgaa agcaaaaaat gaacattcga aaagttcaaa      1740
     atttcaaaga attagttgaa cggcaaaccg gaaaaagaat taatcgttac gcagtgataa      1800
     tggcactgaa atatcaacaa acaatttaac ggttatttaa gccaatgcgg gataaagaga      1860
     cagttaagtg tcccgtatac cccccggact gaacgtgcaa accgcacaat tgtggaaatg      1920
     gccaaaagtc ttttaacaca tgctggctta tgaattttta tggctgaagc cgtgcacact      1980
     gccacctata taaggaacag gtgtccttca agaaccttag atgaccgcac accattcgaa      2040
     tactggaaca accggaaagc ttctgtaaag catcttagaa ttttcggttc acgagcgttt      2100
     gcattaacta gacccaaagg aggaaagttc caggcaaaag caaaagagta cgtatttgtt      2160
     ggctactctt ttacagcaaa agcatacagg ctgtatgatc ctcaaagaag aaatgtatac      2220
     gagctccgag acgtcaaatt tattgagggt gagtttccaa ccaaaattaa agaaacgtca      2280
     cttaatacaa atacaaataa tgactttcaa acaagtatta ttcgttttga gccaatcaag      2340
     gaatccatga acactgatca aaatactccc gaaccgatca atgagctagc tgaggccagc      2400
     agtactgacg atgaagaagc cgttgacgac agcgatgagg gcaggatgtt tgtcagtgcc      2460
     aatgacgact ctgatgacca atctgcagat gacaccctaa tggcacaaca gcgaaggcca      2520
     ggccgaccaa agttcatacg aactggccaa ccaggaaggc cgaaaaaggt gtatcaaact      2580
     cttcaatatt tgaattacga ggaagatgaa gaaacaccgc agtcgttgga gcaagcactc      2640
     aagggccaat acaaagtaaa ttggcaggat tcaatgcgag cggagtatga agcgttaata      2700
     gccaacaata catggtcact ggtagacctg cccaaaggag caaaagcaat tggatcaaaa      2760
     tgggtatttc gcatcaagaa agacaaggat ggcgaaatag agagattcaa atcacgactt      2820
     gttgccaaag gttgtggaca acaatttgga gtgaactact gggaaacata ttccccggta      2880
     atcaggtacg agaccatcag gatgctgctt gcagttgcag cagaaaaaga ccttcacatg      2940
     catcaaatcg atatatcaaa cgcataccta aacagcgacc ttgaggagga tgtttatttg      3000
     aaacaaccac aaaatttcgt tgacaaggaa aatcctggaa aagtcmttaa gttgcaaaaa      3060
     gcaatctatg ggcttaagca gtctggacga ctgtggaacg ataccttaaa tgaagttctt      3120
     caaaatatgg gctttaaaag aagcaagaac gaggcatgtt tatactacaa gaagcaacaa      3180
     aacggtttta gctatatagc tgtctacgtt gacgatttga tcatcatatc tcccaaagaa      3240
     agcgacatag aagacatcaa agggagcata gcaacaaagt ttgatatgaa ggatggcggc      3300
     caactgagct atttccttgg gatggaaata agccgagagg gacaaacagg tcctataaag      3360
     ctatgtcaaa agcgctacat tgaaaatcta ctaagacggt atggcatgca aagctgtcga      3420
     ctagtgggaa ccccacttga ccctggttat gaatctggtt gcacaaatga gaaatgtgca      3480
     aaggtaaata taacccattt tcaatcacta attggttcgc ttatgtattt agcagtagta      3540
     agtcgaccag acatattgca ctctgtcagc aagttatcac agagaaatac cgaccctcac      3600
     cacgaagacg aagcagcagc aaagcatgtg ctacgatatc tgtgtgggac aatcaacctg      3660
     agcattgtct acatgaagac cggcgagctg gtcaagggat tcgcagacgc agattgggca      3720
     aacgacaaag tcgaccgaaa gtcgtattca ggatatgcat tccttatggc tggaagtgca      3780
     ttttcatggg gctcatcaaa gcagagcgtc atcgcccaaa gcagcaccga ggctgaatac      3840
     atcgccttat caacagcagc aaaagaagca gtgtttttaa gaagactcta caagagatgg      3900
     gatggttcga caaggggcca ttgaaactac tatgcgacaa tctgagcgcc tcgagtattg      3960
     ccaagaatcc aattaatcac aagcgtacaa aacacattga tgtcagatat cattttataa      4020
     gggacaaaat taacaaaaat gaaataattg ttgaatatgt taacactcag aataatgtcg      4080
     cagatatact aaccaaaggt ttaagtaagc aaaagcattg tggctttttg aaatcacttg      4140
     gatttgttta aatttgtaat tgcaaaacag atgatgttga tcttaagcaa aag             4193
//
ID   Copia-3_DMoj-I repbase;    DNA;    INV; 3535 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   17-AUG-2020 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DMoj_;
KW   Copia-3_DMoj-LTR; Copia-3_DMoj-I.
XX
NM   Copia-3_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3535
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1271-1271 (2012).
XX
RN   [3]
RP   1-3535
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-AUG-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..3310
FT                 /product="Copia-3_DMoj-I_1p"
FT                 /translation="MSGIYQIEXLDEGNYDTWRVQMRSVLVHQELWSVASG
FT                 EVLPTDAPENVNRQAKDEKALAVITLSVKASQLGYLKDCKTSSEAWNRLKD
FT                 VHQPTGATRKVQLYKKLLFKRMEQGQSISNYINEFVGILDALGTVGIELCD
FT                 ELRSIILLSSLPESFENFVVAIETRDSLPAFNALCIKVKEESERRENAEEK
FT                 NECEKAYSATYKPAAQRAQKQRNKNVVCFKCGERGHMKAECKKESASEKKA
FT                 GRRENKQCSLFNAVSADHLKKSMWCLDSGATSHMCCDKRLFTKFEKHTEMI
FT                 SLADSGLLRAEGRGEIKLETELCTLLLKDVLYVPKMNGNFFSVSSAVKYDC
FT                 FITFGQTYAKVMQKGDCIVKANKVGDLYMFQGKQNGCNSAVKADGVLWHKR
FT                 YGHLNVNSLKDLIKKGMVRGIENMVFNDNMNCKTCMLCKIHVQPFPDATAN
FT                 RAQGILELVHADVCGPFSTQSLAGSRYFLTFIDDKSRRIFVYFLRRKDEVF
FT                 KKFVEFKTLVERQTGKRLKCIRSDKGGEFVNKPFDEYLKSQGIERQLAVAY
FT                 TPQQNGVAERANRTLVEMSRCMLTQSGLGESLWAEAVNTAVYIRNRSPTSA
FT                 LGSMTPMEAWTGKKPFVGHLKTFGSIAVALDKGPRKSKLQPKGKEYRMIGY
FT                 SVASKGYRLYDPITHQVVERRDVLFDETQDDDDSFVCVLPISNATIQPGSG
FT                 NDDSGSSGRSSDRDSSHGRSSDRESSVGHSSDRESSVGRSSDRDSSHGRSC
FT                 DKDKVSVDESANVPRIGPGRPRLIRTGKPGRPRKQHNVLGALVASDVKVPS
FT                 SYEEAMKSAHASEWCDAMKREYDALMANRTWQSAELPKGQRAVGCKWVYSL
FT                 KRDKDGQVERFKARLVAKGCSQQYGINYTETFSPVCRLESVRFIFALAAKL
FT                 RLYVHQMDVCTAYLNSDLSDTVYMKQPQGYIDRAQPDKALLLKKAIYGLKQ
FT                 SGREWNTKLNEVLIGLGFVACENEPCLYQHIGKDNLCLILVYVDEILIACQ
FT                 SKEDLVSIKSAISNSFECVDKGVPELFLGMEVMREDELGPITIGHSQYIKG
FT                 LLQTRGPEKAY"
XX
SQ   Sequence 3535 BP; 1077 A; 623 C; 985 G; 848 T; 2 other;
     ggttatgggc ccaggttgcg gatatctgtg tctttgaaat atagtggttg ttattagtta        60
     tgaactatta acattggtgt gactcaggac taattgataa taagctatga gcgggattta       120
     tcaaatagaa aakttggacg aaggcaatta tgacacttgg cgcgtgcaaa tgcggagtgt       180
     gttggtacac caggagctat ggagtgtagc atcaggtgaa gtgctaccaa cggatgcccc       240
     ggagaatgtg aatcggcagg ccaaagatga gaaggcgctg gcagtgatca cattgagtgt       300
     gaaggcttca caattgggct atttgaagga ttgcaagacg tcgtccgagg catggaatcg       360
     gttgaaagat gtccatcagc caactggagc aacacgtaag gttcagctct acaagaaatt       420
     gcttttcaag cgcatggagc aagggcaaag catttcgaat tacataaatg aattcgtggg       480
     aattctggat gcccttggga cagtaggaat tgagctatgc gacgaattgc gcagtattat       540
     tttgctgtcg agtcttccag aaagtttcga aaatttcgtt gtcgccatag agacgcgcga       600
     cagtctgccg gccttcaacg ctctatgcat caaagtgaag gaggagagcg agcggaggga       660
     gaacgcagaa gaaaagaacg aatgcgaaaa agcatatagt gcaacttaca agccagccgc       720
     gcagagagcg caaaagcaga gaaacaaaaa tgtggtatgt ttcaagtgtg gcgagcgcgg       780
     gcatatgaag gctgagtgta agaaagagag cgcaagtgag aaaaaggcag gaagaagaga       840
     gaacaagcag tgcagtttat ttaatgcggt gagcgcagat catttgaaaa agagtatgtg       900
     gtgtttggat agtggcgcga caagccacat gtgttgtgat aaaaggttat tcacaaagtt       960
     tgaaaaacac acagaaatga tcagtctggc tgactctggt ttgctgagag cagagggaag      1020
     aggagaaata aagctagaga cggaattatg cacgttgctg ttaaaagatg ttctctatgt      1080
     gccgaaaatg aacgggaact ttttctcagt gagcagcgct gtgaaatatg attgctttat      1140
     tacgtttggg caaacgtatg caaaagtaat gcaaaagggt gattgcattg tgaaagcaaa      1200
     taaagttggc gacttgtaca tgtttcaagg aaagcaaaat ggctgtaatt ctgcggtcaa      1260
     ggcagatggt gtgctatggc ataaacggta tggccatttg aatgtaaata gcttgaaaga      1320
     cctgatcaag aaaggaatgg tgcgcggtat tgaaaatatg gttttcaatg ataacatgaa      1380
     ttgtaaaact tgcatgctat gcaaaattca tgtgcagcca tttcctgatg caactgccaa      1440
     tagagcacaa ggcatattgg agttggttca tgcagatgtg tgcgggcctt ttagcacaca      1500
     gtctctggct ggatcgaggt acttcttaac ctttattgat gacaagtcaa ggcgtatctt      1560
     cgtatatttc cttcggagga aggatgaagt cttcaagaag ttcgtcgagt tcaaaacgtt      1620
     ggttgaacgg caaacaggca agcgtctcaa atgtatccgg agcgacaagg gaggtgaatt      1680
     cgtcaataag ccgtttgatg aatacctgaa gagtcaaggg atcgagaggc agctggcagt      1740
     agcatacact ccacagcaaa atggcgtagc tgagagagca aaccgcactc tggtggagat      1800
     gtcaagatgt atgttgacgc agtcaggatt gggtgaatck ttgtgggctg aagcagtcaa      1860
     cacagccgta tatatacgaa atcgatcgcc aaccagtgct ttaggcagta tgacgcctat      1920
     ggaagcgtgg actggtaaga aaccttttgt cggtcatcta aaaacgtttg gttcaattgc      1980
     agtggctttg gacaagggtc caagaaagag caaactgcaa ccaaaaggca aggaataccg      2040
     gatgattggg tattcggtag caagcaaggg ctatcgtttg tacgacccaa taactcacca      2100
     ggtggttgag aggcgagatg ttcttttcga cgagactcaa gatgacgacg attcatttgt      2160
     atgtgtgttg ccaatttcga atgctaccat tcagcctggt agcgggaatg atgactctgg      2220
     cagcagtgga cgcagcagcg atcgggacag cagccatggg cgtagcagcg atcgagagag      2280
     cagcgttgga cacagcagcg atcgggagag cagcgttgga cgcagcagcg atcgagacag      2340
     cagccatggg cgtagctgtg acaaagataa agtcagcgtg gacgaatctg cgaatgttcc      2400
     tcgcattggt cctggcagac caaggctgat tcgaaccggc aagccaggcc gacctcgaaa      2460
     gcagcacaac gtacttgggg ctctagttgc cagcgacgta aaggttccat catcctatga      2520
     ggaggcgatg aagagtgctc atgcatcaga gtggtgcgat gcgatgaaac gggaatatga      2580
     cgcactgatg gccaaccgga catggcaatc ggcagagttg ccgaaagggc agcgagctgt      2640
     tggctgtaaa tgggtataca gcctgaagcg tgacaaagat ggtcaagtag aacgatttaa      2700
     ggcacgattg gtggcaaaag gttgctccca gcagtatggc ataaactata cagaaacttt      2760
     ttctccagta tgcagactag agagcgtgcg attcatcttt gcactggcag cgaaattaag      2820
     attgtatgta caccaaatgg atgtatgcac ggcatacctc aacagtgacc tgagcgatac      2880
     agtgtacatg aagcaaccac aagggtacat tgatcgggct caaccagata aggctttgtt      2940
     gctgaagaag gcgatatatg gattgaaaca atcaggaagg gagtggaaca caaaactaaa      3000
     tgaagtcctg attggtttgg gtttcgtggc ctgcgaaaac gagccctgtc tctaccaaca      3060
     tatagggaag gataatttgt gtttaatcct ggtatatgtt gatgagatac tgatagcatg      3120
     tcaatccaaa gaggacctgg ttagcatcaa atcggcgatt tcgaattcgt ttgaatgtgt      3180
     cgacaaaggc gtgcctgaac tgttcttggg catggaggtg atgcgtgaag atgagcttgg      3240
     gcctatcacc ataggccatt cgcaatacat caagggatta ttgcaaactc gtggtccaga      3300
     aaaagcatat tgatattgga tatcattttt gtacgtcaag tagttgacga gggtcaaatt      3360
     aacttaaagt atgcttgtac aacagatatg attgcggata tcatgacaaa gaagaagaac      3420
     aagcatgtta aatttactga aatgttaagt ttgaaatgaa ttatgttaaa tgttaagtta      3480
     atttgaaatg gattatgtaa actgaatttg taatcatgat cgcattgagg aaggg           3535
//
ID   Copia-3_DMoj-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   17-AUG-2020 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DMoj_;
KW   Copia-3_DMoj-LTR; Copia-3_DMoj-I.
XX
NM   Copia-3_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-202
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1272-1272 (2012).
XX
RN   [3]
RP   1-202
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-AUG-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
SQ   Sequence 202 BP; 70 A; 44 C; 33 G; 55 T; 0 other;
     tgttaatgaa tatcatctgt tacaatgcga cacgatatat cgataaacgt gtgtaccata        60
     tctagctgat aggtaccacc tctaagtaag ttagtcacaa ataaaccttt gctacgaaag       120
     cacacaagcg cggcatttta tttctatatt tcaaagcaga taacttccag caactcggat       180
     agagaagagt ctccatccaa ca                                                202
//
ID   Copia-3_DTa-I repbase;    DNA;    INV; 4145 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4145
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5694-5694 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..4115
FT                 /product="Copia-3_DTa-I_1p"
FT                 /translation="MANSFIRIEPLNAENYDTWKLQMCAILVKNDLWQYVN
FT                 GVVECPDEEEAKVLWQIKDEKARADILLSISTSELALIEDCTSAREYWLKL
FT                 QNTFQSKGPVRKASLLKRVALYRMSEGSDARVHINDFFDAVKKLKEIGVAI
FT                 SDDLLAILLLYSLPDSYETFRCAIETRDELPTPDILRVKIXEESQAXRTKN
FT                 DREEQSALYANKSKGKPKXEKFQKETRKCFSCNKVGHLARNCQMKFKKNAK
FT                 NEQGETSQSKKEALMSICESAYMAEGQSSMWCLDSGCSTHMSPNENIFEXM
FT                 SKVEKTLHLADHSTAKVNGVGEVNIEVKGKQKNNEIALQEVLFVSELRQNL
FT                 LSVSRITDRGYEVHFRKQEAVIVKNNKEVWLSAKRYGNLYYLNTAEPQANK
FT                 ISDKQSEIDLWHSRMGHLNEKDLKNMAISGKAFGINIKQGDKLSQCEICIT
FT                 EKQAANHYKSATERRTESTLEIVHSDVCGPMRTQSMSGYKYFVTFIDDYSR
FT                 YCSVYFLKQKTEVLEAFKSYKALAENSTGNKIKALQSDNGTEFRNKESDNF
FT                 LRTNGIARRLTTPHTPQQNGIAERQNRTLVEMARCMMKQSGAPPTFWAEAI
FT                 NTACYIRNRCPTKALSGDLPYTFWTSKIPTVVYMRTFGTKAFALIKGVNKG
FT                 KFESRSEECVFLGYSNESKAYRLYSPKKRTIITSXDVKFMHVSGFKSEYQE
FT                 FYEDEDSDGVAIEMTCNDPDPQDVSSSDDDTEEEQNAAPRRGRGRPKILRT
FT                 GQRGRPRKIYQAVRDDRSXVDASENDDGDPVVSNSSLEDVFEECEMAFVAA
FT                 VGDPLTFKEAQSSRDAIYWTRAVEDEFMAQILNNTWKVKECPDNRKVIGNR
FT                 MVFQTKDDGTSTGRKKARLVAKGYAQKPGEDFFETYSPVARFTSVRLLAAI
FT                 AAEYGMEIHQMDVVTAYLNGELEEKVFMDIPDHFNEFMRKLESGAPIGTLQ
FT                 QAPSAEYVKAASSWRKSLKRVSNPVCLIKKALYGLRQSGLRWYCKLTAKLK
FT                 EIGLQPTEQXPCLFEKRKKGKLLLVTIYVDDLLLASNHPEWLRETKEHLSK
FT                 SFQMKDFGAVKTCLGISFKQSVEKHTVFMSQEKYIDAILKKYGMLDCKPAV
FT                 TPMETKTTLKRSAEPNENEMKRYPYQSLIGSLMFLAVSTRPDIAYAVNFMS
FT                 QFNSNYTIEHWKASKRILRYLSGTKSLGLLFRKTGEDLYGVVDADWGSNLS
FT                 DRRSYSGQAFILAGAAISWEARKQRTVALSSTESEYLAMSEAVKEALYLKA
FT                 LLNRIGNSCELVRIFNDNQSAQQLVKGFGFHPRTKHIDVRHHFIQEKHRNG
FT                 EILVEYMQTERMPADVLTKGLSSNKHNECINSLGVTSI"
XX
SQ   Sequence 4145 BP; 1363 A; 813 C; 1013 G; 947 T; 9 other;
     ggttatgggc ccaggcgcca acgatcgaaa ataagtgaaa agtcgagaaa gagaagctgt        60
     gaaaaatggc aaattcgttc ataagaattg agccgctaaa cgcggagaac tacgacacat       120
     ggaagttgca aatgtgtgct attctggtga aaaatgactt atggcaatat gtaaacggcg       180
     tagtggagtg ccctgacgag gaggaagcaa aggttttatg gcaaatcaag gacgaaaaag       240
     cmcgtgcgga tatattactg tccataagta catccgagtt ggccctaatt gaagactgta       300
     catctgcaag agaatactgg ttgaaactcc aaaatacatt ccaatcaaag gggcctgtcc       360
     gcaaagctag tttactaaaa cgagtagcat tgtatcgcat gagtgaagga agtgacgcgc       420
     gtgttcacat taatgatttc tttgacgcag taaagaaact gaaagaaatc ggggtggcca       480
     tatctgatga tctgctcgcg attctcttgt tgtatagttt gccggattcc tatgagactt       540
     tccgatgtgc gattgaaaca cgagacgaat tgccaacccc agatattctc cgtgttaaaa       600
     tamtagaaga atcgcaagca cktagaacga aaaatgaccg tgaggagcag agtgcactgt       660
     acgcaaacaa atcaaaggga aaacctaagg wtgagaagtt tcaaaaagaa actaggaaat       720
     gtttttcgtg taacaaggtc ggccatcttg caagaaattg ccaaatgaag ttcaaaaaga       780
     acgcaaaaaa cgagcagggt gaaacaagtc aaagcaagaa ggaagcgctg atgtctatat       840
     gcgaaagtgc gtacatggcg gaaggacaga gtagtatgtg gtgtctagac agcggatgct       900
     caactcacat gagtcccaac gaaaacatat tcgagmaaat gtccaaagtt gaaaaaacat       960
     tgcatttggc agatcatagc actgcaaaag taaatggagt cggcgaagta aatatcgaag      1020
     taaaaggaaa acagaaaaac aatgaaatag cactgcaaga agttttgttt gtttcggagc      1080
     tacgccaaaa tttgctttcg gtttcaagaa tcactgacag aggttatgaa gttcattttc      1140
     gtaagcaaga agccgtaatt gtgaaaaaca ataaggaagt ctggcttagc gcaaaacggt      1200
     acggtaattt gtactactta aacacggctg agcctcaagc taacaagatt agtgacaagc      1260
     aaagcgagat tgatctgtgg cacagtcgca tgggtcattt aaatgagaag gatctaaaaa      1320
     acatggcgat aagtggaaag gcattcggaa taaacatcaa gcaaggagac aaactttcgc      1380
     agtgtgaaat ttgtatcaca gaaaaacaag cagcgaatca ctataaaagc gctactgaga      1440
     gaagaactga aagtacactg gaaattgttc acagtgatgt gtgcggacca atgcgtaccc      1500
     agtccatgag cggatacaaa tatttcgtta cgtttattga cgattattct cgctactgtt      1560
     cagtatactt tctaaagcag aaaacagaag tacttgaagc gtttaaatcc tacaaagctt      1620
     tagctgaaaa ttctacgggc aacaaaatca aggcgttgca gagcgacaat gggactgagt      1680
     ttcgaaacaa ggagtctgac aattttcttc gaaccaacgg tatagcgcga cgattgacaa      1740
     ctccgcacac gccgcaacaa aacggcatcg cagaaaggca aaaccgtaca ctggtcgaaa      1800
     tggccaggtg tatgatgaaa caatcagggg cgccacctac gttttgggct gaggcgatca      1860
     acacggcatg ttacatccgt aacaggtgcc caacgaaggc actttctggc gatttaccat      1920
     acaccttctg gacatctaaa attcccacag tagtttacat gcgcacgttc ggtacaaaag      1980
     cttttgcgtt gataaaaggc gtaaacaagg gaaagtttga gtcgagatca gaagagtgtg      2040
     ttttccttgg gtactcwaac gaatcgaagg cctatcgact gtactccccg aaaaagcgta      2100
     ccataataac aagcaawgat gttaaattta tgcatgtctc aggcttcaaa agcgagtacc      2160
     aggagttcta cgaagacgaa gattcggatg gtgttgccat tgagatgacc tgcaatgatc      2220
     cagacccaca agatgtgtcc tcaagcgatg atgacaccga agaagagcag aatgcggcac      2280
     cacgtcgagg cagaggtcgt cccaaaatcc tacgaacagg acagcgtggg agaccgcgaa      2340
     aaatatatca agcagtacgc gatgatcgaa gtaawgtcga tgcatctgaa aacgatgatg      2400
     gcgatccagt ggtctcgaat agttcccttg aggacgtgtt cgaggagtgc gaaatggcgt      2460
     ttgtggcggc tgtaggagat ccattaacgt tcaaggaagc gcaaagttcc agagatgcga      2520
     tctactggac acgagcagtc gaggacgagt ttatggcaca gattctcaac aatacctgga      2580
     aagtcaaaga gtgtccagat aatcggaagg taattggaaa caggatggtt tttcaaacga      2640
     aggatgacgg cacctcaact ggcagaaaga aggctcgatt agtagcgaag ggctatgcac      2700
     agaaacccgg agaagatttc tttgaaactt actcacctgt agccaggttc acgtcggtca      2760
     ggctgttggc agcaatcgcc gctgaatacg gcatggaaat ccatcagatg gatgtggtca      2820
     ccgcatatct taatggtgag cttgaagaaa aagtattcat ggatattcca gaccatttca      2880
     acgagttcat gaggaaattg gagtctggtg caccaattgg aacgctacaa caagcgccct      2940
     ctgcagaata tgtcaaagcc gcaagttctt ggagaaaatc cttaaaacga gtctcgaatc      3000
     ctgtttgttt aatcaagaag gctttgtacg gactccgcca atcgggacta cgttggtatt      3060
     gtaagcttac agctaagtta aaggaaatcg gactacagcc aactgaacaa katccatgct      3120
     tgtttgaaaa aaggaagaaa ggaaaacttt tgctggttac gatctacgta gacgatttat      3180
     tgttggcgtc gaatcatcct gaatggctgc gagagacaaa ggaacatctg tcaaaatcgt      3240
     ttcaaatgaa ggactttgga gcagtgaaaa cgtgcctggg catctcattc aagcaaagcg      3300
     tcgaaaaaca tacagttttt atgtcgcagg aaaagtacat cgatgccatt cttaaaaagt      3360
     atggaatgtt agattgcaag ccggcagtaa ccccgatgga gaccaagaca actctaaaac      3420
     gctcagctga accaaacgag aacgagatga aaaggtatcc gtatcaaagt ctaattggtt      3480
     ccctaatgtt tcttgcagtc tcaacgcgcc cagacatcgc atatgccgtg aattttatga      3540
     gtcaattcaa ttccaactac accattgagc actggaaggc atcgaaacgg atcctgagat      3600
     atttgagcgg tacgaagagc cttggactcc tcttcaggaa aactggagaa gatctttatg      3660
     gcgtggtaga tgcagattgg ggctccaatt tatcggatcg tcgttcgtac tctggtcaag      3720
     cattcatatt ggctggagca gcaataagct gggaggcaag aaagcaacgg acagttgctt      3780
     tatcaagcac cgagtcggag tacttggcca tgtcagaggc agtcaaggag gccctgtatt      3840
     taaaagctct actcaaccga attggcaaca gctgcgaatt ggtacggatc ttcaatgaca      3900
     atcaaagcgc gcagcaactg gtcaaaggct tcggatttca tcctcgtact aagcatattg      3960
     acgtacgtca ccactttatt caggagaaac acaggaatgg agaaattttg gtcgaatata      4020
     tgcaaacgga gcgtatgcca gcagatgtcc tgaccaaggg attaagcagc aacaaacata      4080
     acgaatgtat aaattcccta ggtgtgacta gtatttagat ttgcgattac tactttgaga      4140
     gggtg                                                                  4145
//
ID   Copia-3_DTa-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   21-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-259
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5696-5696 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 259 BP; 68 A; 60 C; 39 G; 92 T; 0 other;
     tgttcaaact ggctgttcac ctcagttaat agcaaagtac caatctggta actctagcat        60
     taagttgatc tggcattacg tttctatttt tcaccacact ttgttcttct cctgcattgt       120
     acttcttctc ttactttatt cgtttcaagt taccggccaa gaataggcgc cgcagtttat       180
     caataaagat attataacca aacgttttac ttattattcg gatcacctgc atctgcattg       240
     ttggggcaaa atcccaaca                                                    259
//
ID   Copia-3_DWil-I repbase;    DNA;    INV; 4052 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DWil_;
KW   Copia-3_DWil-LTR; Copia-3_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4052
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 1913987 1909936.
XX
CC   'GTCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..4019
FT                 /product="Copia-3_DWil-I_1p"
FT                 /translation="MSNLYHIEKLDEKNYDSWNIQMRSVLVHSDLWDVTAG
FT                 NLPTVEGVDLGGLDRKALASITLSVKPSQLAYIKNCLTAFEAWTRLRDVHQ
FT                 PKGPVRKVSLYNKLLSLRMTDGQDMPSYINGFSDVLDQLAGAGVQINEELR
FT                 TIILLSSLPPVYENFVVAIETRDDLPSFEILCIKLKEEAERKRLTVTKENG
FT                 QEAFVAMQNRNRNQNARTQRNRSQITCYKCGRQGHVKAQCGKERVDKKEKE
FT                 YKYTEKMENKQCSLINALEAENMKREKWCLDSGATSHMCCDKSMFSDFSVH
FT                 DEKISLADAGYLRAEGKGKVTIRTGICKLTMNNVLYVPGLAGNFMSVARVI
FT                 EYNSVVHFEKHMAKIIQNGECILKAKKIGNLFVFEAESENLFAAVGEDVSL
FT                 WHKRFGHLNYKSLTQIASKGLVRGLSVTNFAPNTPCKTCMVSKIHVQPFPK
FT                 MTESRSSELLQLVHSDVCGPFGTKSLGGSRYFLTFIDDKSRRIFVYFLKGK
FT                 DEVFGKFLEFKSLVERQTGKKLKCIRSDNGREYVNNAFDDYLKKNGILRQL
FT                 TIAYTPQQNGVAERANRTLVEMSRCLLAQSGLCEALWAEAIFTAVYLRNRS
FT                 PTSALTNQTPMEAWTGKKPCINHLKVFGSVAVALSKGHQESKFRPKGKEYR
FT                 MVGYSREAKGYRLYDGETRKVVERRDVLFDERDPIEQTNCTTVMFDLPGRY
FT                 RQNEIADANPEINESESDASEGQSAESDADEESFHSAPEEKLAQDESEMRV
FT                 GPGRPRVIRTGKPGRPRKQYNILASIVAGEVPTPSTYEDAISGPYASQWQE
FT                 AMDKEFGALVKNQTWELIDLTNKQRTIGCKWVFSLKKNAQGDIERFKARLV
FT                 AKGCSQQFGVNYTDTYAPVCRLESVRFVLAVAAELDLYLHQMDVCTAYLNS
FT                 DLEDTVYMRQPMGYTDKNRPKAALHLKKAIYGLKQSGRAWNSKLDAVLRDL
FT                 GFKPCSSEPCLYQNHGEEDLTLILVYVDDLLIACRSKQKMDAIKAAISNAF
FT                 DCTDKGATELFLGMEIHRDGELGPITLGHSQYINDMLVRYGIENCRPAVTP
FT                 LDAGHQVACDNKQCKRVDIGSYQTQIGELMWLALTTRPDILHSVAKLAQRN
FT                 QDPHSEHEAGVKHILRYLASTMDKKLRYKRTGQAFSGYVDADWGGDKTDRK
FT                 SYTGYVFFLAGGPISWKSEKQRSVALSSTEAEYIALSTACKEAIVLRRLII
FT                 ELGCGNAETPTVVYGDNLSAQQLAKNPVHHSRTKHIDIRYHFVRQTVSEGF
FT                 VELKYVPTDLMIADILTKNLPKKKHNDFVNMLNLS"
XX
SQ   Sequence 4052 BP; 1291 A; 709 C; 1033 G; 1019 T; 0 other;
     ggttatgggc ccagggcacg gttttgaata gtaaagtaat gaagtgatat atttaacgat        60
     ttatatcaga gagcattaaa gctacgaata agttacgaac tttattcggg agaagagact       120
     caaaagacaa catgagtaat ctgtaccaca tcgagaagtt ggatgaaaag aattatgatt       180
     cttggaatat acaaatgcgc agcgtgttgg tgcattcaga cctgtgggat gtaacggctg       240
     gaaatttgcc cacggtggaa ggtgtcgatc tcggaggatt ggatcggaag gccctagcaa       300
     gtattacgtt gagcgtaaaa ccatcgcaat tggcatacat aaaaaattgt ttaacggcat       360
     ttgaggcgtg gacaagacta cgagatgtcc atcagccaaa gggaccggtg cggaaggtat       420
     cgctgtacaa taagttgcta agcttacgca tgacagacgg tcaagatatg cccagttata       480
     taaatggttt ctctgatgtg ttagatcagc ttgcaggcgc cggtgtacaa ataaatgagg       540
     agttacgaac tatcattttg ttatcgagtt taccaccagt gtatgagaat ttcgttgtcg       600
     ccatcgagac gcgcgacgat ttgcccagtt ttgaaattct ctgcataaaa ttaaaggagg       660
     aagcagaacg aaaacgtcta actgtaacga aagagaatgg gcaagaggca tttgttgcta       720
     tgcagaacag aaacagaaat caaaatgcac gcacacagag aaatcgttcg caaattactt       780
     gttataaatg cggcagacaa gggcatgtca aagcacagtg cggcaaagag agagtcgata       840
     aaaaagagaa agagtacaaa tacactgaga aaatggagaa caagcaatgt agcttgataa       900
     atgctttgga agcagagaat atgaaaagag agaagtggtg cttggattct ggtgcgacga       960
     gtcatatgtg ttgcgataag agtatgtttt cagatttctc tgtacatgat gagaagatca      1020
     gtctggcaga tgcggggtat ttacgtgcag aaggcaaagg aaaagtcact attcggactg      1080
     gaatatgtaa attaacaatg aacaacgtgc tttatgtacc agggctggca ggaaacttta      1140
     tgtcagtggc gcgtgttatt gaatataaca gtgttgtaca tttcgaaaaa catatggcca      1200
     agatcataca aaatggtgaa tgtattttaa aagcaaaaaa gataggcaac ttgtttgttt      1260
     ttgaagctga atcggaaaat ctttttgctg ctgtcggaga agatgtatca ttgtggcaca      1320
     aacgctttgg tcatcttaat tataaaagtc tgacgcaaat cgcaagtaag ggcttggtac      1380
     gtgggcttag tgtgaccaac ttcgcgccca atactccatg taagacatgc atggtgagta      1440
     aaatacatgt tcagccattt cctaagatga cagaaagtcg gtccagtgaa cttttacaat      1500
     tggttcatag tgatgtctgc ggaccttttg gaacaaaatc actaggtggt tcacgttatt      1560
     tcctaacatt tattgatgac aaatctaggc gaatttttgt gtatttcctc aagggcaaag      1620
     atgaggtttt tggcaagttt ctggagttca agagtctagt ggagaggcag acagggaaga      1680
     agctaaaatg tatccgcagt gacaatggac gagaatatgt gaacaatgca ttcgatgact      1740
     acctgaagaa aaacgggata ttacgccagt tgaccatagc gtacactcca caacagaacg      1800
     gcgttgcgga acgagctaac cgcactctgg tggaaatgtc taggtgtttg ttggcacagt      1860
     ctggattatg tgaggcattg tgggcagagg ctatatttac agctgtatat ctgaggaacc      1920
     gttcgcctac aagcgcactg acaaaccaaa cgccaatgga agcgtggact ggcaagaagc      1980
     catgtattaa tcatcttaaa gtttttggtt ctgttgcagt tgcgctatcc aagggtcacc      2040
     aggaaagtaa attccgacca aaaggaaagg aatatcgcat ggtgggatat tcaagagaag      2100
     caaaaggata ccgattatat gatggagaaa ctcgcaaagt ggttgaacga agagatgttc      2160
     tctttgatga gagagatccc atagagcaaa ctaattgtac gacggttatg tttgatttgc      2220
     ctggacgcta taggcaaaat gagatagcag atgcaaatcc agaaataaat gaaagcgaga      2280
     gcgacgcatc agagggacag tctgctgaat cagatgctga cgaggaatcg tttcatagtg      2340
     cacctgaaga aaagcttgca caagatgaga gcgaaatgcg ggtaggacct ggcagaccac      2400
     gagtaatcag aacgggaaaa cctggacggc cgagaaaaca atataatata cttgcttcga      2460
     ttgtggctgg tgaggtacca actccatcga cctacgagga tgccataagt ggaccatatg      2520
     catcgcagtg gcaagaggca atggacaaag agtttggagc tctggtaaaa aatcaaactt      2580
     gggagctgat agacctaaca aacaaacaac gaacaatagg ctgcaaatgg gtttttagtc      2640
     tgaaaaagaa tgcgcaggga gacattgaac gttttaaggc gcgattggtt gcgaaaggat      2700
     gctcgcagca gttcggtgta aactacaccg atacatatgc acctgtatgt cgattagaaa      2760
     gcgtaaggtt tgttttggcg gtggcagcag agttggatct ttatttacat caaatggacg      2820
     tatgcacagc atacctcaat agcgatctgg aggacacggt gtatatgagg caacccatgg      2880
     ggtacacaga caaaaatcgt ccaaaggctg cattacattt gaagaaggca atctacggtt      2940
     tgaaacaatc aggaagggca tggaactcta agctggacgc tgtattacga gatttgggtt      3000
     ttaaaccatg tagtagtgag ccgtgtctat accaaaacca tggtgaagaa gacttaacat      3060
     taattcttgt ttatgttgat gatctcctta tagcttgtcg ttcaaaacag aagatggatg      3120
     ccatcaaagc agcgatatca aacgcgttcg attgcacaga caagggtgca actgagctat      3180
     tcctgggtat ggagattcat cgagacggtg agcttgggcc tattacttta ggccattccc      3240
     aatatatcaa cgatatgttg gttcgatacg gtatcgaaaa ctgcagaccg gcggttactc      3300
     ctcttgacgc agggcatcaa gtggcatgcg acaataagca gtgcaagagg gtggacatag      3360
     ggtcgtacca gactcaaata ggcgaactga tgtggctggc tctaaccacc agaccggata      3420
     tattgcattc agttgcaaag ttggctcagc gaaatcaaga tccgcattca gagcatgaag      3480
     caggtgtgaa gcacatcctg cggtatttgg catcaacgat ggataaaaag ctacgctata      3540
     aaaggaccgg ccaagctttt tctggatatg tagatgccga ttggggtggt gacaaaactg      3600
     accggaagtc ctataccggc tatgttttct ttttggccgg aggcccaata tcttggaaat      3660
     ctgaaaaaca gcgcagtgtg gcgctaagta gcactgaagc tgagtatata gctttgtcga      3720
     ccgcatgcaa agaagctatc gttttgcgac gcttaatcat tgagctggga tgtggaaatg      3780
     ccgagacccc aacagttgta tatggagata acttgagtgc ccaacagttg gcgaagaatc      3840
     ccgttcatca ttctaggaca aaacatatag atataagata tcattttgta cgacaaactg      3900
     tatctgaagg ttttgttgag ttaaagtatg ttccgactga tttaatgata gcggatattt      3960
     taactaagaa tttgccaaag aaaaagcata atgactttgt gaatatgtta aatttgagtt      4020
     aactttgtaa acatggttgc attgaggaag gg                                    4052
//
ID   Copia-3_DWil-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_DWil_;
KW   Copia-3_DWil-I; Copia-3_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-240
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 1909935 1909696.
XX
SQ   Sequence 240 BP; 57 A; 58 C; 43 G; 82 T; 0 other;
     tgttaaaaaa ggtaacgttc aagaactttc cagagcaatg cacacatgta ttctaattgc        60
     gtatgtattt gaacgcatac atctatctat ctcttttttg tatttgaata ctgcgctcgc       120
     ccgactgaat taccggcacg cgcagttagt ctctaataaa cttctgagtt gtacggacgt       180
     gttactattc ttttattctg cctgcgttat tcgggttgtg cgtcccctcc cccctcaaca       240
//
ID   Copia-3_FoCa-I repbase;    DNA;    INV; 6200 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-6200
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2564-2564 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           490..6183
FT                 /product="Copia-3_FoCa-I_1p"
FT                 /note="DUF4219, gag, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTSTIKRIDVTHIVKLDDTNYARWRLQITLLLKSHDL
FT                 WEVVNGTTQRPADEAQQPAWDKKDIQAQSIIVPTLSATQTNHIYDCATSKA
FT                 MFDKLKSINSDSSSLNKQHTMARFFNYKIGKSQSLIEAFAEVEELGRRLNE
FT                 MGVVMPEASIVTKIVSSLPDEEYNAFKKAWDSVPDKDQSMIMLLARLKKEE
FT                 LERKESKPAATNQDAAKAFLTHDQKKGKKKQSIEELKKATTCHGCGKKGHW
FT                 KRECRSNPQNQSNKPSDNPAQANRSPGKAFMLNAIQTPMQAPVTEQVWLSD
FT                 SGANQHVCGDKAWFTRYEEFDTPKSVFLTDKRATQALGKGTVTLDAYINGI
FT                 WEECTIDNVLYIQGAVNLFSEGSMAKKGYSIVRDKNGATFYQDGRFKGPIA
FT                 EFKNDMYVMKFRPTSQIIAAYMHPVTNAKLWHQRLTHINMNYVVDSIKKDA
FT                 VRGIDLEAVSHKIMCEDCEIGKQSRKPFPAATRNATIKPGEMVHMDLAGKM
FT                 PVASLGGAQYFLLLKDDATGFRTVYFLKSKDEAKDRIKCYIEFMENQTGRK
FT                 VKICRSDNGGEFCNSTLASYFRDRGIIHETTVSYNPEMNGRSEREIRTLKD
FT                 CARTILLAAKLPESLWAEAVATTVYVHNRILDKQSPNITAFEAIFGKKPSL
FT                 RHLRVFGSVAFAHIPAQKRTVWGAKGERLILCGYASESKKYRLYDPESGQV
FT                 VEARNVSFHEEAFEPTVMIHGEEERDEPDESKSEKDDAKDDAQDDAQDDAE
FT                 WTDEEKYDPEDPQPDQVDPQPVQPDNEKMGDELEVQVKTEKGDYTARIPSQ
FT                 GTTRVVLPETSKKSGTTRNLRDRAKIKKPDRYQAHAIYADKEPSTYKEAVE
FT                 SKEKEEWIKAMQDEIESHKKNGTWKYVKRPANARLLDSKWVYKLKRKMDGT
FT                 IDRFKARLVIRGHRQKEGVDYFETFSAVSRYESIRLLLSIAAAKKMHIAQL
FT                 DVQTAYLYGILKETIYMSQPEGFHNGDDSIVCLLIKALYGLKQAGRTWNET
FT                 FTEFLEKFDLHPCYCDPCIFVGDVDAIITYLSLWVDDSLVIGKDKNAVQKI
FT                 INAIKSYFEITIMEPTAYVGMQIIRDGNDGLLLSQPFYIRNLLEKYNMLEC
FT                 NPTNVPMQPHAGELVPAATINETLPYRQLVGSLIYLAKCTRPDISYAVSRL
FT                 SQFMHAYDETHWKAAKQVLRYLKGTEELGIKYKPCEDMILRGYTDADYASD
FT                 KMDRKSTTGFVFMLNDSVISWSSQKQPIVSMSSMESEYISLASGAREAVWL
FT                 RRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELV
FT                 STGQLAIEYVHTSEQIADGLTKPLLKTQHFKMRHDLSMERNETKESKDNPT
FT                 KVKRGPLQANFSLMSLLTILLMFITQACGVTHQNAIPLLWKKSPIPVTTGY
FT                 NQVHLLVKFMNPCEILTQDLLHKDLSAYATEKCNKIYDEMFLDELEKMCPK
FT                 RKFSDHINSRHTREIGRRVKRVLPLLAVGVIIGVTVLVAGLSVGGAINSFV
FT                 QTGRISALQGTVAEQREMLDELERRVEISEREIEKLKVSLNATLEQLQLHQ
FT                 LDHDELKGKSIDTNFAIAYLTSRLMIGREIIREATRQWRRGKVYAPLMDFF
FT                 NFTLPCGDACPVSFAQSQKCEISDDRTKLYVDFTATEINKDLQLIEADSFD
FT                 LKVERKNETCVLKYKGPHNAILSTKDDCVYSINVKEPTTPDLIVSPTRGCT
FT                 PTAKTKNSNHFDIDHCYDKNLAEPWDFVQIKLHHGQYHIYCPGSNITIERK
FT                 LQQCPASVFILPMNANFKINDIEFSGTESSLVHQEVVDPLFTMKANWHLQP
FT                 SFNWTSLMINGSTDEGGSIHYHTSNEPAWSTMEWILTLCILIIVAQATLCV
FT                 FLFLKSRPNVISVRANPVETADIEL"
XX
SQ   Sequence 6200 BP; 2053 A; 1340 C; 1354 G; 1453 T; 0 other;
     tggtagcaaa gccgttagtt tgtatgattc atattgttgg tctcaacctg cctcattgag        60
     tgtctcaaaa gtgccccagt ctcagagtct gttaaagtct cacaacgaga agaactgttt       120
     cctgttcaac acttgataaa ctgaagtaga tcagtgttat tgttgtgaag tgaaaaggtc       180
     aattcatcag ttaataatag cagtaagtct ccactgccca gtgccagtct ggacggagta       240
     agcctgtaaa agtgtgccgt gaattggacc attgtttgga caagagacat caaccctttg       300
     actctacccg aagctgaacc ttccgcccga ggacgagttt tattgaggac gaccactcta       360
     cccaaatcct gagttcccgt ctaccaaatc tcgacctttt tcgattctac tgctctttat       420
     taggcaaaga gaaggtaaca agtctatttc tgtttttcgc ttctgctttc cctactccac       480
     aacgacaaga tgacatcaac aatcaaaaga atagatgtta cgcacattgt caagctagac       540
     gacaccaatt acgcgaggtg gagacttcag ataactttac ttctcaagtc acatgacctg       600
     tgggaagtgg tcaacggcac tacccaacga cctgcagatg aagcacaaca gccagcatgg       660
     gataagaagg atatacaagc acaatccatc attgtcccca ctctcagtgc cactcaaaca       720
     aatcatattt atgactgcgc tacatcaaaa gcaatgtttg acaagctgaa aagcatcaat       780
     tcagattcaa gctcgcttaa caagcaacat accatggcta gattcttcaa ttacaaaatt       840
     ggcaagagtc agtcattgat tgaagcattt gcagaggtgg aagagctggg cagaagacta       900
     aatgaaatgg gagtcgtcat gcctgaagca tccattgtca caaagattgt ctcaagtctc       960
     cccgacgagg agtataatgc cttcaaaaag gcatgggaca gcgttccgga taaggaccag      1020
     agcatgataa tgctacttgc ccgtctgaag aaggaggagt tggagaggaa ggaatccaaa      1080
     ccagcagcaa ccaatcaaga tgcagcaaag gcattcttga cccatgacca gaagaaaggc      1140
     aagaagaaac agagcattga agagttgaaa aaggcaacaa cctgccatgg gtgtgggaaa      1200
     aagggccact ggaaaaggga atgcaggagt aatccacaaa atcagagcaa taaaccttca      1260
     gataatcccg cacaagccaa tagaagccct gggaaagcgt tcatgctaaa tgcaatacaa      1320
     acccccatgc aagcacccgt gactgaacaa gtgtggctaa gcgattctgg agctaaccag      1380
     catgtctgtg gagataaggc atggtttaca agatatgaag agtttgacac tcccaagtca      1440
     gtcttcctaa cggacaaaag ggctacacaa gcactaggaa aagggacagt gacacttgac      1500
     gcttacatca acggcatatg ggaggaatgt accatagata acgtgttgta catacaaggg      1560
     gctgtcaacc ttttttctga gggatcaatg gctaagaaag ggtactccat cgtccgtgac      1620
     aagaatggag caacatttta tcaggatgga cggtttaagg ggccaattgc cgagttcaag      1680
     aatgatatgt atgtcatgaa gtttcgtccc acttcacaaa ttattgctgc atacatgcat      1740
     cccgtgacta atgctaaact atggcatcaa cgcttgacac acattaatat gaactatgtg      1800
     gtggactcca tcaagaaaga cgcagttcgt ggaattgacc tggaggccgt gtcacataaa      1860
     attatgtgtg aagactgtga gattgggaag caatctcgaa agccatttcc agccgcaaca      1920
     agaaatgcaa cgataaaacc aggagaaatg gtccatatgg acttagccgg aaaaatgcct      1980
     gttgcatccc tgggaggagc tcaatatttc ttactcttga aagacgatgc tactggcttc      2040
     cgcactgtat attttctcaa gagcaaagac gaagccaagg atcgtatcaa atgctacatt      2100
     gaatttatgg aaaatcaaac aggaagaaag gtcaagatat gccgttcaga caatggtgga      2160
     gaattctgta attctacttt ggcatcatac ttcagagacc ggggaataat tcatgaaaca      2220
     accgtcagct acaatccaga aatgaatggg aggtccgaac gtgaaataag aactttaaaa      2280
     gactgtgctc gaactattct gctggcagct aaattacccg aatctttatg ggctgaagcc      2340
     gttgccacca ccgtctacgt ccacaaccga atactggaca agcaaagtcc aaatataacc      2400
     gcatttgaag caatatttgg caagaaacct tcactccgtc atttgagagt ctttggtagc      2460
     gtagcatttg cacatatacc agcccagaaa aggacggtct ggggagcaaa gggagagcga      2520
     cttatcctgt gtgggtacgc atcagagagc aagaaatatc gtctttacga ccctgagtcc      2580
     ggacaagtgg ttgaggcaag aaatgtatct ttccacgaag aagcttttga accgacagta      2640
     atgatacatg gcgaagaaga aagagatgaa cctgatgaat ccaaatctga aaaagatgat      2700
     gcaaaagatg atgcacaaga tgatgcacaa gatgatgcag aatggacgga cgaggagaaa      2760
     tacgatcccg aggacccaca gcctgatcaa gttgacccac agccagtaca acctgacaac      2820
     gagaaaatgg gtgacgaatt agaagtccaa gttaaaactg aaaaaggaga ctacacggct      2880
     cgcattccat cgcaagggac gacacgtgtt gtcttgcctg aaacaagtaa aaaatcagga      2940
     accactcgca atttaagaga cagagctaaa attaagaaac cagatagata tcaagctcat      3000
     gccatttatg cagacaaaga accttcaact tataaagaag ccgttgagtc taaagagaag      3060
     gaagaatgga taaaggcaat gcaagatgag attgaaagtc ataagaaaaa tgggacttgg      3120
     aaatacgtga agaggccagc caatgcaaga ttgcttgaca gtaaatgggt atacaagctt      3180
     aaacgtaaaa tggatggaac aattgatcga tttaaagccc ggcttgtcat acgagggcat      3240
     agacagaaag aaggcgtcga ctattttgag acattctccg ccgtatctcg gtacgagtcc      3300
     ataagacttc tactaagtat agctgcagca aagaaaatgc atatcgcaca gctggatgtc      3360
     cagacagcct atctctacgg gattctaaag gagaccatat acatgtcaca acctgagggt      3420
     ttccacaatg gagatgactc catcgtgtgc ctcctgatca aggctttata tggattgaaa      3480
     caggctggaa gaacctggaa tgaaacattc accgaatttc tcgagaaatt cgacttgcac      3540
     ccatgttact gcgatccctg tatatttgtt ggagatgttg atgcaataat cacttatctc      3600
     agcttatggg tggatgattc actggtcatt ggaaaagata aaaatgccgt gcagaagatc      3660
     atcaatgcaa tcaaatccta ctttgaaata acgataatgg agcccacagc ctatgttggg      3720
     atgcaaataa tcagagatgg aaatgatggt ttacttttgt cacaaccttt ttacatccgt      3780
     aacctgcttg aaaagtacaa tatgctggag tgcaacccga cgaatgtgcc gatgcaacct      3840
     catgcaggag aactcgtccc agccgcaaca ataaacgaga cccttccgta tcgacagctc      3900
     gttggatcat taatttacct agccaagtgc acacgccctg acatctcata tgcagtgtcc      3960
     cgcctgtctc agtttatgca cgcatacgac gaaactcact ggaaagctgc aaagcaagtc      4020
     ctccgctatt taaaaggcac cgaggaactc ggaatcaaat acaaaccgtg tgaggatatg      4080
     attctcaggg gatatacaga tgcagattat gcttccgaca agatggatag aaaatctaca      4140
     acaggttttg tcttcatgct aaatgacagc gttatttcat ggtcaagcca aaagcaaccc      4200
     attgtctcaa tgtcatcaat ggaaagtgaa tatatatctc tcgcttctgg agcgcgtgaa      4260
     gccgtttggt tacgacgatt tctagaagaa ttaggattcc cacaagagtc cccaacaata      4320
     attcatgttg acaaccagag tgcaataaaa ttggtcaaaa atccagagat gcactcaaga      4380
     tccaagcaca tcgatgtccg gtaccactac acaagagagc tagttagtac aggacagttg      4440
     gcaattgaat atgtacatac cagtgaacaa attgcagatg gattaactaa gccactactg      4500
     aagacccagc atttcaagat gagacacgat ctcagtatgg aaagaaatga gacaaaggag      4560
     agcaaggaca acccaactaa agtaaagaga ggtcccctcc aagccaactt ctcactgatg      4620
     agccttctca ccatccttct tatgtttatt acgcaagctt gtggggtgac acatcagaat      4680
     gcgatccctt tactatggaa aaagagtcca atcccagtta caacgggata taaccaagtc      4740
     cacttgctcg tcaaattcat gaacccgtgc gaaattttaa cacaggatct actccataag      4800
     gatttaagtg cctatgcaac cgagaaatgt aacaaaatat acgacgaaat gttcctggat      4860
     gagctagaaa aaatgtgccc taaaagaaaa ttctccgatc atattaattc gcgacatacc      4920
     agagagattg gacgaagagt gaagagagtc ctcccattac ttgcagttgg agtaataatt      4980
     ggtgtgactg tccttgtagc cggcttatca gttggtggag caatcaattc gtttgttcaa      5040
     actggaagaa tctctgcttt gcaaggaaca gtagcggaac aaagagagat gctggatgaa      5100
     ttggaacgtc gcgtggaaat atcggaaaga gagattgaga agcttaaggt tagcctaaat      5160
     gctacactag aacagcttca gctacatcag cttgatcacg acgaactcaa gggaaaatcc      5220
     attgacacca atttcgcaat tgcctacctt accagtcgcc tcatgatagg tagagaaata      5280
     attagagaag caacaagaca gtggcggcga ggaaaagttt acgcaccact aatggatttc      5340
     tttaatttca cgttaccctg tggtgatgct tgcccagtca gcttcgcaca atctcaaaag      5400
     tgcgaaatat cagatgacag aaccaagctg tatgtggact tcacagcaac tgaaattaac      5460
     aaagatttgc aactcatcga ggcagactcc ttcgatctca aagttgaaag gaagaatgaa      5520
     acctgcgttc taaagtacaa gggaccccat aatgccatcc tttctacgaa agatgactgc      5580
     gtatactcca tcaatgttaa ggagcctaca acccccgacc taattgtttc gcccactcga      5640
     ggatgcacgc caacagcgaa aacaaagaac tccaatcact ttgacataga ccactgttat      5700
     gacaagaacc ttgctgaacc atgggatttt gtacaaatca aactacacca tggacaatat      5760
     catatctact gccctgggtc caatattacc attgagagga agctgcaaca atgccctgct      5820
     agcgtgttca tccttccaat gaatgctaat tttaaaataa atgatattga attttcagga      5880
     actgaatcca gccttgttca ccaagaggta gtcgacccac tattcacgat gaaagccaac      5940
     tggcacttgc agcctagttt caactggacc agtctgatga tcaatggttc cactgacgaa      6000
     ggagggtcaa tccactacca cacaagcaat gaaccagcct ggtcaacaat ggaatggatc      6060
     ttaacccttt gcatactaat aatagttgct caagccactc tttgtgtttt cctttttctg      6120
     aaaagccggc caaatgtaat ttcggttagg gcaaatccag tggaaactgc cgatattgaa      6180
     ctttaaaaat tgagggagga                                                  6200
//
ID   Copia-3_FoCa-LTR repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-315
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2569-2569 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 315 BP; 93 A; 57 C; 48 G; 117 T; 0 other;
     tgttaaaata tgcatgttaa caaagttttc catatttatc aatttttaag tttgtcgact        60
     tttatgaggg ctgagcattt tccaaccttt ttcccaggac aagggattaa aagggtcctt       120
     ttgtttttat gcctcattag aagggacact tcgtttgagc ataactctgc gtagtttgta       180
     tggtcacttc tgaccacata ttattacata tgtatgaatg tctcctatgt actgtcaaaa       240
     ccttaaaacc aagttgttta ataaaaatca ccatcagtct aaaaatatct tccagcgaga       300
     tcatttttac tttca                                                        315
//
ID   Copia-3_HeAr-I repbase;    DNA;    INV; 4231 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4231
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5549-5549 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..4157
FT                 /product="Copia-3_HeAr-I_1p"
FT                 /note="gag, zinc finger, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MAKQAKVEDILIPIFDGANYSSWKLRLLTLLEYKECH
FT                 EAAIVKTENPDAAGKKKDLKARTIIMSTISDKQLEYITECKTAYEMVQKFD
FT                 KMYLTQSTAMQIICRGKIEEIKLNNYNTVEEFFVDFEKTINEFKNAGGKLD
FT                 ESEKLRYLLRALPPSYSYIGDFLDVIPEQQRTVDYVCSKIKEKNMAASDSE
FT                 KKNNVSTFATKSVTQCFICGKTGHFKKDCWHGQKYNKGHPTFRGHQRSYNR
FT                 GGAYRGHSRGRGQYNFRGHSRGAGQNHLGGQGQSSGESTNNCSSESWMATI
FT                 CDPESQVWGCIETDECNNNNSEINWLLDSGCTDHIINNDTYFYNSVDLKSP
FT                 VNVKLPDGKMLKATKVGTVKIYFKNYYNQKNVDLKNVYYVEGIKQNLLSLS
FT                 KITKSCTIVAKNDYAKIYNGVRELIAVANKINNLYCLKSFVCKNEIYTHSV
FT                 KLTQKEKWHRALGHVNFQYLNKLINNKLVHGLPDRIEGIDMKCSNCIQSKM
FT                 SNVPFENNRTKTTETLELIHTDLNGPHNTSGYGGEKYFLTFIDDYSKCTRI
FT                 FCIKSKSEVASCLIEFVNLVENKFDKKVKKIQCDNGKEYLNKEIYNFIRQK
FT                 GIELLPCPPYVHELNGVAERYNRSAMDIARCLMREAKIHRRYWPEAIKTAA
FT                 YLKNRTIANTVENKTPYEIFFRIKPNVEHLKIYGSRVFVRVPEALRKTKWD
FT                 DKAQVGVLVGYNENSYRVLLNNRIINARHVQVVEENTELICLEKLDDEKDK
FT                 CLETQKTSDDTAKTDEDSDENFVDVDETYSNDDSSNDNKEKDKVESHKRIR
FT                 NPVLRYGNPVSHFIYVNYIDASVPDTFEEAMTSNESKQWQTAMNSEINSLN
FT                 KNNTWQLVERPKDRKVIDIKWVFRRKSNNVYKARLVVKGFQQNECIDNAYS
FT                 PVGKMQTLKILLSYSCKNNLFVEQMDVETAFLNADVKSEVYVNQPEGYETG
FT                 DSRVYKLQKALYGLKESPRVWYDCFDKFISTLNFVRSNYDYCLYVNRASKD
FT                 PIYILIFVDDFLICCKDRDKIIEVKTNLMKKFAMKDLGKIKTYIGINIDYS
FT                 NDKSTMTLNQTKYIESLAAKYGLNNTKLYDTPMETNLKLDQAKEVDESIKY
FT                 RNIIGELLYISTGTRPDVAYSVNYLSRYQSCYNQTHYKYAMRILKYLYKTK
FT                 SLKLTYSDNVNTDILDCMVDSDYAGDNVDRKSTTGFVIRLYGNLIFWKTRK
FT                 QNTVTKCSTFAEYTAMSEAVSEVLFIRNMLSESFDVKLGPTKLYVDNSGAI
FT                 AIAKYGNFTKNSKHIEVQYHYINENYENKIIDIVKIDSKFNLADMLTKSLN
FT                 KTAFLRNRLELRLI"
XX
SQ   Sequence 4231 BP; 1688 A; 489 C; 814 G; 1240 T; 0 other;
     tggtagcaga gcgtggttcg aaagaaaact taagtgtgag agaagaataa agttcaatga        60
     cgataagaaa tacgactaag actttgaggt tatggtgaca gaaagcattg aaaaaggtga       120
     agaagaaatt gttgtgaaaa tacgtaaatc tacaaaaata catcgtcatt gtcggtaaaa       180
     tggctaaaca agcaaaggtg gaagatattt tgatacctat ttttgatggt gcaaactatt       240
     caagttggaa attaagattg ttaacattgt tggaatacaa agaatgccac gaggccgcca       300
     ttgttaagac ggaaaatccc gacgccgcag ggaaaaagaa ggatctcaaa gcaagaacta       360
     taataatgag cacaatctca gataaacaat tggagtatat tactgaatgc aaaacggcat       420
     atgaaatggt acaaaagttt gacaaaatgt atttaacgca gtcaacagca atgcaaataa       480
     tatgtagagg aaaaattgaa gagataaaat taaacaatta caacacagtt gaagaatttt       540
     ttgttgattt tgagaaaaca ataaatgagt tcaaaaatgc cggaggaaaa ttagatgaat       600
     ctgaaaagtt aagatatcta ctaagagcgc ttccaccaag ctacagttat attggagatt       660
     ttcttgacgt gattccagaa caacaaagaa cagttgatta tgtatgttct aaaataaaag       720
     agaaaaatat ggctgctagt gactcggaga agaaaaacaa tgtgagtaca ttcgctacca       780
     aatctgtaac tcagtgcttt atctgtggaa aaactggtca tttcaagaaa gactgctggc       840
     atggccagaa atataataaa ggacatccga catttcgagg tcatcaaaga agttacaaca       900
     gaggaggagc atacaggggt catagccgag gaagaggtca atacaatttt agaggtcata       960
     gccgtggtgc aggtcaaaat catcttggtg gtcaaggtca gtccagtggt gaatcaacaa      1020
     acaactgctc atcggagtcg tggatggcta caatatgtga tccggaaagt caggtatggg      1080
     ggtgtattga aacagatgaa tgtaataaca ataacagtga aattaattgg cttttagata      1140
     gtgggtgtac tgaccatata ataaataatg atacatattt ttataattca gtcgatttga      1200
     aaagtcctgt caatgtaaaa ctgccagatg gtaaaatgtt aaaagctacc aaagtcggta      1260
     ctgttaaaat ttattttaag aactattaca accaaaagaa tgtagatttg aaaaatgttt      1320
     attatgttga gggtattaaa caaaatttgt taagtctttc aaagataact aaaagttgca      1380
     caatagtagc taaaaatgat tatgcaaaga tttataatgg tgtaagagaa ttaattgcag      1440
     tggctaataa aataaacaac ttgtattgct taaaaagttt tgtctgtaaa aatgagatat      1500
     atacacattc agttaaattg actcaaaaag agaaatggca tagagcactc ggtcatgtaa      1560
     actttcagta tttaaataaa ttgataaata ataaattagt acacggtttg cctgatagga      1620
     ttgaagggat agacatgaaa tgttccaatt gtattcaaag taaaatgagt aatgtccctt      1680
     ttgaaaataa tagaacaaaa actactgaaa ccttagaatt aattcatact gatttgaacg      1740
     gtccacataa cacatctgga tatggaggag aaaagtattt cctcacattt attgatgact      1800
     atagtaaatg cacaaggata ttttgtatta aaagtaagtc tgaagttgct agttgtttga      1860
     tagaatttgt aaatttagta gaaaataaat ttgacaaaaa agttaagaaa attcaatgcg      1920
     ataatggtaa agaatattta aataaggaaa tttataactt tattaggcag aagggtatag      1980
     agttattacc atgtccaccc tatgtccatg aattaaatgg ggtagcggaa agatataata      2040
     gatctgctat ggatatagct aggtgtttaa tgagagaagc taaaattcac agaagatatt      2100
     ggcctgaagc aataaagaca gcagcatatt taaaaaatcg aactattgca aatacagtag      2160
     aaaataaaac tccatatgag atctttttta gaataaaacc aaatgttgag cacctaaaaa      2220
     tatatggaag tagagttttt gtcagggttc ctgaagcttt aagaaaaact aaatgggatg      2280
     ataaagcaca agtaggagtt ttagtgggtt ataatgaaaa tagttataga gttctattaa      2340
     ataatagaat aattaatgct agacatgttc aggtagttga agaaaataca gaactgattt      2400
     gcttagaaaa attagatgat gagaaagata aatgtttaga aactcagaaa acttcagacg      2460
     atacagctaa aactgatgag gatagcgatg aaaattttgt agatgtagac gagacttatt      2520
     ctaatgacga tagttcaaat gataataagg aaaaggataa agtagaatca cataaaagaa      2580
     ttagaaatcc agttttaaga tatggtaatc cagtttcaca ttttatatat gttaactaca      2640
     ttgatgcaag tgttccagac acttttgagg aggcgatgac ctcaaatgag tccaaacaat      2700
     ggcaaacggc aatgaactct gaaattaata gtttaaataa aaataatact tggcaacttg      2760
     ttgaaagacc aaaagataga aaggttatag atattaagtg ggtttttaga aggaaaagca      2820
     ataatgttta taaagctaga ttagttgtga agggattcca acaaaatgaa tgcattgata      2880
     atgcctattc accagtagga aaaatgcaaa ctttgaaaat tctattgtca tacagttgta      2940
     aaaataattt atttgttgaa cagatggatg tagagacagc ctttttaaat gcagatgtaa      3000
     agtcagaagt gtatgttaat caacctgaag gttatgaaac tggtgacagt agagtttaca      3060
     aacttcaaaa ggcactctac ggtctcaaag agagtcctag agtatggtat gattgttttg      3120
     ataaatttat tagtacacta aattttgtta gaagtaacta tgattactgt ctttatgtta      3180
     acagagcaag caaagatcca atatacattt taatatttgt cgatgatttt ttaatttgtt      3240
     gtaaagacag agataaaata atagaagtaa aaaccaatct gatgaaaaaa tttgcaatga      3300
     aagacttagg gaaaattaaa acctatattg ggattaatat tgattatagc aatgataaaa      3360
     gtactatgac tctaaaccaa acaaaatata ttgaatcttt ggctgcaaag tatggtctga      3420
     ataatactaa gttatatgat actccgatgg aaacaaattt aaaactagat caagctaaag      3480
     aagtagatga aagtattaag tacagaaata taataggtga attattgtat attagtacag      3540
     gcacaaggcc agatgttgca tacagtgtaa attatctaag ccgatatcaa agttgttata      3600
     accaaacaca ttataaatat gcaatgagaa tattaaagta tttgtataaa actaaaagtc      3660
     taaagttaac atactctgat aatgtaaaca ctgacatctt agattgtatg gtagattctg      3720
     attatgcagg agataatgtg gatagaaaat ctacaactgg ttttgttatt agattatatg      3780
     gaaacttaat tttttggaaa actcgtaaac aaaatacagt aactaaatgt tctacttttg      3840
     cagagtatac tgctatgtca gaggcagtgt cagaagtgct ttttattaga aatatgctaa      3900
     gtgaatcatt tgatgtaaag ctaggtccaa caaaattgta tgtagataat tcaggtgcaa      3960
     ttgcaattgc taaatatggt aactttacaa aaaactcaaa gcacattgaa gtgcagtatc      4020
     attacataaa tgagaattat gaaaacaaaa taattgatat tgtaaaaatt gattctaaat      4080
     ttaatttggc agatatgtta actaaaagtt tgaataagac agctttctta agaaatagat      4140
     tggagttgag attaatttag ttatgttaag atttagtttt gttaagattt agttttgtta      4200
     aatgatataa gataataaat ttaaggaggc g                                     4231
//
ID   Copia-3_HeAr-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-178
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5538-5538 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 178 BP; 51 A; 29 C; 27 G; 71 T; 0 other;
     tgttgtaata agtaaattta ttatctgtgg cttaaaagac ttaatactgt ttttgattgt        60
     ctgtggttct cttgtccttg ctcggtgtga aaaatggtgt gctccaaatg tgcttttttc       120
     attataataa actaaagtac aatatcaaat ctttcaattc gatccatcta cctcaaca         178
//
ID   Copia-3_LH-I repbase;    DNA;    INV; 4159 BP.
XX
AC   ADOQ01002200;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_LH_;
KW   Copia-3_LH-LTR; Copia-3_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4159
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002200; Positions    8589    4431.
XX
CC   Positions [1648-2148] - Integrase core
CC   'GTAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2571..4133
FT                 /product="Copia-3_LH-I_3p"
FT                 /translation="MSCKDKRVWFEAINEELEAHKRNGTWSLVPRKRDMKT
FT                 IEVSVQSHERQRRQESSFQGEVVRRGFQQREGIDFTETFSPVVRYDSLRVL
FT                 LAHVTQKDLEMVSFDVRTAFLYGELKEEIFMEVPEGVNSEKVRDANVNERK
FT                 SESVDFVYALNKTLYGLKQSPRCWNNKIKEFLNKFNFRKIEADKCIFIGKY
FT                 GEHTVHLAIFVDDGLIACKSKEILYSILEELSREFDITVGDASLFVGLQID
FT                 RNRERKSMFIHQSTYTKSILEKFGMNDAKAISVPADPNVISKPVESENECI
FT                 DNVPYRETVGSLMFLAIVTRPDLAFAVNNLSKYLNNHNRSHWQSVKKVFAY
FT                 LVGSSNVGIEYRSGGCEANLVGFSDADYASDPETRRSTTGYIFFMTNGPVT
FT                 WSCQRQKLVTLSTTESEYVAAATAAKELIWLRKLLKGIGIQCENTTTLHID
FT                 NQSTIKLAKNPEFHKRTKHINIRYHYLREKYESGEISIAYVPSEMQKADIL
FT                 TKALPQERFKRLCNNMSIINDSRVN"
FT   CDS           join(115..1236,1240..2535)
FT                 /product="Copia-3_LH-I_1p"
FT                 /translation="MEEISAKHVAKFDGTNFLGWKFQINALFIAHGIDDVV
FT                 SGARAKPNDNQSQKARIWIKDNAKAMFLISLAMEYPQLESLLIHTTAKEMW
FT                 DSLTTIHERKSASNRLALTQRFHAHRMDPTETVVQHIAKVQNMARQLMDLG
FT                 ENVSDVTIMAKILASLTSKFGNFQTAWESVEPTRQTIEHLKERLIQEKSRL
FT                 TDDDQHATALAVSSSSKKGTKAGGNKFFRKEEKKSSQRNHGQKDVKCFKCR
FT                 EKGHFARECQNGENSNEKETKGRNRSREGALVANNNSRSVLGKCNGQPYAK
FT                 RDAYAKSHEIKPSIEQARKVLKEDLSEVWIADSEVSAHITYRREWLVNYRL
FT                 RKGDTILLGDNGECEVIGEGTALIEMLVDGEHEAQIENVLHVPEIRKNLFS
FT                 IGECTAKGFKVIFEDDRARVTKNGVEMAVGIKQKNKIYRMIFRTQVTANNQ
FT                 EVNVSTTSLRLWHERLSHVNARALRELVNEELVNGVKVSNSNEFFCDSCQL
FT                 GKLHRLPFTKQNEKRETEPGEFIHSDVSGPMQETSLGGAKFFVTFKDDATG
FT                 YRYVYFMKHKADVYECFTEFEREITKKHGKEIRVLRSDNGRKYCNKKMKKY
FT                 LSARGIKHERTAPYTPEQNGKSERDNRTIVECARTLMQAKDAPKFLWAKAV
FT                 NTAVYMLNRVLRASNDKMTSYEAWTGRKPNLQHVKVFGSKAYMHVPKQFTT
FT                 KFEARSKRVMVVGYQGDSSNYRVYEPATKKVTVSRNIVVHEELNSSGDKAN
FT                 DREVVLPDSVKSRQKILRRTTYSTNPSQHEQPQLNHDCYKTEQHSKSLSAT
FT                 KRTQ"
XX
SQ   Sequence 4159 BP; 1414 A; 852 C; 1044 G; 849 T; 0 other;
     ggttatgggc ccagtctcac gctgaagtga aacgacgagt gcgagtagta caaaagtttt        60
     ttatttacgt cgttagtggt taacacgcgt gtgccgtaag accggatctg caagatggaa       120
     gaaatctcgg cgaaacacgt ggcaaagttc gatggaacaa atttcctcgg ctggaagttc       180
     caaataaatg ctctgtttat cgcgcacgga atcgacgatg tagtcagcgg cgcgagagcg       240
     aaaccaaacg acaaccagtc ccagaaagcc aggatatgga tcaaggacaa tgccaaggcg       300
     atgtttctca tatcgttggc aatggaatac cctcaacttg agagcttgtt gatccacaca       360
     accgcaaagg aaatgtggga tagcctgaca acgattcatg agcggaaatc ggcgtcgaac       420
     aggctcgcgc tcacgcagcg ttttcacgcg caccgcatgg atcccacgga aacagtcgtg       480
     cagcatatcg cgaaagtgca gaacatggcc cgacagttga tggatctcgg agagaatgtg       540
     tccgatgtga ccataatggc taagatttta gcaagcctga catcgaaatt tggaaatttc       600
     cagactgcat gggaaagcgt cgaaccaact cgtcaaacaa tagaacattt gaaggagagg       660
     ctgatccaag aaaaaagtcg attaacagat gacgatcaac acgccacggc cctggcggtt       720
     tcatcctcgt cgaaaaaggg gacaaaagct ggcggcaaca aattctttag aaaggaggag       780
     aaaaaatcga gtcaacggaa tcacggtcaa aaggatgtga agtgtttcaa gtgccgtgag       840
     aaaggacatt tcgcccgcga atgccaaaac ggggaaaatt caaatgaaaa agagacaaag       900
     gggcggaaca gatcacgtga gggcgcgctc gtggcgaata acaactctag aagcgtgcta       960
     ggcaagtgca acgggcagcc atacgcaaaa cgcgacgcgt atgccaaatc tcatgagata      1020
     aaaccgtcaa ttgagcaagc acgaaaagtc ttgaaagaag acttgagcga agtgtggata      1080
     gctgacagcg aagtctcagc ccatattacc tacagacgcg aatggctcgt aaattatcga      1140
     ttgagaaaag gagatactat attactaggc gataatggtg agtgtgaagt catcggcgaa      1200
     ggaacggcac tcatcgaaat gctagtagac ggagagtgac acgaagcgca aatcgaaaat      1260
     gtcctccatg taccggagat aagaaagaac ttattttcga tcggtgagtg caccgcgaaa      1320
     ggcttcaagg tgattttcga ggacgatcgg gctagagtga caaagaacgg cgtggagatg      1380
     gcagtcggca tcaagcaaaa gaacaaaatt tatcggatga tcttccgcac acaagtgacc      1440
     gcgaacaatc aagaggtaaa cgtgtcaaca acaagtttaa gattgtggca cgagagactg      1500
     agtcatgtga acgcgcgcgc gttaagagaa cttgtaaacg aggaacttgt gaacggtgta      1560
     aaggtatcaa actcgaatga attcttctgc gactcgtgtc aattgggtaa actgcataga      1620
     cttccattta cgaaacagaa tgaaaaacga gaaacggaac ccggcgagtt tatacacagt      1680
     gacgtcagtg gacctatgca agagacgtct ttaggcggcg cgaaattttt tgttacattc      1740
     aaagatgacg cgacaggata ccgatacgtg tattttatga agcacaaggc cgatgtgtac      1800
     gagtgtttca cagagttcga gcgggaaata actaaaaaac acggcaagga aattcgtgta      1860
     ctgaggtcag acaatgggcg taaatattgt aacaagaaga tgaaaaaata tctctcggcg      1920
     cgaggcatca aacacgaaag gacggcgcct tacacaccag aacagaacgg aaagtcagaa      1980
     cgggacaacc ggaccatagt cgaatgtgca cggacactga tgcaagccaa agacgcacca      2040
     aagtttcttt gggcgaaagc tgttaacaca gccgtttaca tgttaaatag agtcctgagg      2100
     gcaagcaacg acaagatgac gtcgtacgaa gcctggacag ggagaaaacc caatctccaa      2160
     catgtaaaag tgttcgggtc aaaagcatac atgcatgtgc ccaaacaatt tacgacaaag      2220
     ttcgaagcaa gatctaagag ggtcatggtc gtggggtatc aaggtgactc atcgaactac      2280
     agggtgtacg aacctgctac aaagaaagtg acagtatcga gaaatatagt agtgcatgaa      2340
     gagctcaact cgtcaggaga caaagcgaac gatagggaag tggtcttacc cgattcagtc      2400
     aagagcagac agaagatact acgaaggacg acatactcga cgaacccgag ccagcacgaa      2460
     caaccccagc tcaaccacga ctgctacaag acagagcaac actcaaaaag cctcagcgct      2520
     acaaaacgaa cgcagtagaa tactacatcc cgaccaacta taaggaagct atgagctgca      2580
     aagacaaaag agtatggttc gaggcgataa acgaagaact cgaagcccat aaaagaaatg      2640
     ggacgtggag tctagttcct agaaagcgtg acatgaaaac gatcgaagtg agtgttcaaa      2700
     gtcatgagag acaaagaaga caagagtcat cgtttcaagg cgaggttgtg cgcagaggat      2760
     tccagcaacg tgagggcatt gacttcacgg agacgttttc accagtggta agatacgatt      2820
     cactacgcgt attgctggca cacgtgacac agaaagatct ggagatggtg tccttcgacg      2880
     tcagaacggc gtttctttac ggagaactga aggaagaaat cttcatggaa gttcctgagg      2940
     gtgtcaactc ggaaaaagtg cgcgacgcca atgtgaatga aaggaagagt gaaagcgtgg      3000
     acttcgtgta cgcattaaat aagacattgt acggtctaaa acaatcgccc cgctgttgga      3060
     acaacaagat caaagaattc ttaaataaat tcaattttag aaagatcgag gccgacaagt      3120
     gtatctttat cggaaaatac ggagaacaca cggtacacct cgcaattttt gttgatgacg      3180
     gattgatcgc gtgcaaatca aaggaaattc tctattcaat tctcgaggaa ttaagtcgcg      3240
     aattcgacat cacggttggc gatgcgagtc tatttgtcgg tttacaaatc gatcgtaata      3300
     gagagcgtaa aagtatgttc atacatcaaa gtacgtacac taagagcata ctcgagaaat      3360
     tcggaatgaa tgacgcgaaa gccataagcg tgcctgccga tccgaatgtg atttccaaac      3420
     ccgtagagtc agagaacgaa tgtatagata acgtacctta ccgtgagaca gttggttcac      3480
     tgatgttttt agcaatcgtg acgcgtccag acttagcatt cgcggtaaac aatctgagta      3540
     agtatctaaa taatcacaat cgaagtcatt ggcaaagtgt taagaaagtg ttcgcatatt      3600
     tagtcggaag ttcaaatgtc ggtatagaat atagaagcgg cggatgcgag gccaatttag      3660
     ttggtttttc agacgcagat tacgcaagcg acccagaaac ccgtaggtcg acgacgggtt      3720
     acatattttt tatgacaaac ggtcccgtca cgtggtcatg tcagcgacag aaactagtaa      3780
     ctctaagtac aacggaatca gaatatgtag ctgcagcaac agcggcaaaa gaactgattt      3840
     ggttgcgaaa actgttaaaa ggtatcggta ttcaatgtga aaacacgaca actttgcaca      3900
     tcgataacca gagtacgatc aaattggcca aaaaccccga atttcacaag cgcaccaaac      3960
     atatcaacat tcggtatcat tatctacgcg agaagtatga aagtggcgaa ataagcatcg      4020
     catacgtacc ttctgaaatg caaaaggccg acattctgac aaaagctcta ccccaagaac      4080
     gatttaaaag actgtgcaac aatatgagca taatcaacga tagccgagtg aattaaacat      4140
     aaaaaaaaaa cggcggaag                                                   4159
//
ID   Copia-3_LH-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   ADOQ01002200;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_LH_;
KW   Copia-3_LH-I; Copia-3_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-228
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002200; Positions    4430    4203.
XX
SQ   Sequence 228 BP; 52 A; 52 C; 48 G; 76 T; 0 other;
     tgttaagtag ttttattttt atatgttctg ttgttcccgc cataaagtat cgcgtctagt        60
     tataaccgcg tgccgtatga gcgcgcatcg ttagtcggcc cgtcggcccc agttagtcct       120
     ccgcggtgat tgctagtgag cagttgtatc ctgtgattaa agagactaac tacaagatat       180
     tgttaaatta attcctgtcc tttgcactcg gatcctacaa tcctaaca                    228
//
ID   Copia-3_LMi-I repbase;    DNA;    INV; 4099 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4099
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3077-3077 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(670..816,792..2222,2458..4080)
FT                 /product="Copia-3_LMi-I_1p"
FT                 /translation="MMSKMKINKERQRRKQTTETDALKTSNHKRNEDRKCF
FT                 SCGKVGHLSKQASRSLIKTGLVCFKCKKKGHRSNECASICVNKNEDCAMLS
FT                 KVLMLKRNSSFSVDVNTLDCDEWYIDSGATHHVTNQRDWYTTYEPFKTPRK
FT                 MDSAKNGVQIEALGTGRIDVKVFNGQKWTERYFEDVWFCPDGSCNLFSVKK
FT                 AAQKGINQVIENDGKSWVFFKNDIPIAVATSIAENELYRLAVKVVRKVKSC
FT                 VVAETDDTLQRWHERMGHQNKRHVHQFLKDHGIETMFDNSLCEGCVYGKHN
FT                 RLAFGERVEKPTKPGELFYADICGPMEETDLQGHRYFAVFKDDFSSFRVTY
FT                 LLHHKDEIKEKLPVFIKMMKTQADVTVRELRTDGGKEFHNKDVQKFADSIG
FT                 LKHSITAPYTPQQNGVAERENRILCEMARSWLCSAEYLPKALWGEAILAAT
FT                 YTLNRTGPTKMKGKTPIEIFMKKKGRFDNLVIFGTECYAWIPTQKRKKFDA
FT                 KSSKGYVVGYDDCGYRIYFPEKNVCVFAEMRERKPQFSERRNLKKPSCYCE
FT                 DSDHKPRMMLLCETPRNYKEAMQSENSEAWKKAMEEEINALQKNETWELVY
FT                 KEKPNKLIENKWVFATKLNANNEVVRYKARLVAKGYTQRFGIDYVDTFSPV
FT                 ARFETMRCLLSVAVQHDWCIRQFDVRTAFLNGILKEEIYMYQPEGFDDGTG
FT                 RVCKLLKSLYGLKQASKCWYECLVKFLTECNLRESHSDPCMFYGENLVLLF
FT                 YVDDGLAMGSTDATSKFIEQLGKRFQITVEKVDYFLGLQIKKFDNCIQINQ
FT                 SAYVKRILEKYGMVDAKPLSLPIEPGWIPGESPPFNNTKLYREMVGSLMYL
FT                 TQATRPDLSYAVNVASRVQDSPTQAHFALLKRILRYLKSTITDGIQFMKDD
FT                 NCNIEAYSDADHGGDRGTRRSTSGILLKFHGGPVVWKSKLQKCVALSSMEA
FT                 EYVAASEACKSLVWLDQLLKEIGAVDETSVPVLQIDNQSAIKFINGSRFYE
FT                 RSKHIETRYHYIRQLVKENKVNVSYIPTNRQAADILTKGLPFTKLKLMKEL
FT                 AGMVSTSQYI"
XX
SQ   Sequence 4099 BP; 1403 A; 604 C; 942 G; 1150 T; 0 other;
     tggtagcaga tgtgcgcggt tgttgataat tacgttttta tgaagaacga tagttttggt        60
     cgagtttaag atactaaaag gagaaagaga acgaagaaac gggcgaagaa aattgggcga       120
     cttggagaat cgcaatgaga actattttgg aatgtgacga aatctttgac gtcgcgcgct       180
     gcttaaaccg aagaaggcgg acaaaattat gaatctgata ttaagaaatg gacgaaggca       240
     aatgcaaaag caaggaaacg gctaattttg tcgcttgata ctaagccttt acttcgtgtt       300
     ggtgaatgta agactgctaa agagatttgg gataagctac acaagattta cgatgttcac       360
     tcagccgaaa atattgatct gcttcgacat aaatttcaca acattgtgtg ggaagcatct       420
     ggcggtatac aaggccattt agcgaaattt gatgaaataa aaactcaact tgctttgcta       480
     gacaagccga tcgacgatgg tgatctttgt gcgcgatttt tgcaaacttt gccgaaagaa       540
     tttgactaca tttatataac atggcacgat ttacctgctg aagagaagac gtggaataaa       600
     ctgcagaaac ggtgtttaaa ttatgaattg agaattacag atcgtgatga agaaagtgtt       660
     gcttcagcaa tgatgtcgaa aatgaagatt aataaagagc gacaaaggcg caaacaaact       720
     accgaaacag acgcattaaa aacgtctaat cacaaaagaa atgaagatag aaaatgcttt       780
     tcttgcggta aagtaggtca cttatcaaaa caggcctagt gtgtttcaaa tgtaagaaaa       840
     aaggccatcg ctcaaatgaa tgtgcaagta tttgcgtgaa taaaaatgaa gactgtgcta       900
     tgttaagtaa agttttaatg ctgaaacgca acagtagttt ttcagtagat gtaaatacgc       960
     ttgattgtga tgagtggtac attgacagtg gtgcgacgca tcacgtaaca aatcagcgtg      1020
     actggtacac tacctatgaa ccttttaaga ctccaaggaa gatggatagt gccaagaatg      1080
     gtgtgcaaat tgaagcactt ggcacaggtc gtattgatgt aaaagttttt aatggacaga      1140
     agtggacaga acgatatttt gaagatgttt ggttttgtcc tgatggatcc tgcaacttat      1200
     tttctgttaa gaaggctgca caaaagggaa taaatcaagt aatcgaaaat gatggaaaat      1260
     catgggtatt tttcaaaaat gatattccga ttgctgttgc tacatccatt gctgaaaatg      1320
     aactttatcg tttagctgtg aaagttgttc gtaaagtaaa gtcctgtgtt gttgctgaaa      1380
     ctgatgacac tttacagagg tggcacgaaa gaatgggtca tcaaaataag cgccatgtgc      1440
     accagttctt gaaggatcat ggtatagaga caatgtttga taatagcctt tgtgaagggt      1500
     gtgtctatgg taaacataat cgcctggcat ttggtgaaag agtggagaaa ccaacaaaac      1560
     ctggagaatt attttatgca gatatttgtg gaccaatgga ggaaactgat ttgcagggtc      1620
     atagatactt tgctgttttt aaggacgatt tttccagttt tagagtaaca taccttctgc      1680
     atcacaaaga tgaaattaaa gaaaaattac cagtattcat taagatgatg aagactcagg      1740
     cagatgttac tgtaagagaa ttacgtacag acggtggcaa ggaattccac aacaaagatg      1800
     tacagaagtt tgctgactca attgggctga aacattcaat aactgcacca tatactcctc      1860
     agcagaatgg agttgccgag cgggaaaaca ggattctttg tgagatggca cgttcttggc      1920
     tttgctcagc tgaatatttg ccaaaagcat tgtggggtga ggctattctg gctgctacat      1980
     acactctgaa ccgaactggt cccacaaaaa tgaaaggtaa aactccaatt gaaatattta      2040
     tgaagaagaa aggtcgtttt gataatttag tgatttttgg aacagaatgt tatgcatgga      2100
     ttcctacaca aaaacggaag aagtttgatg ctaaatcttc taaaggatat gtggttggtt      2160
     atgatgattg tgggtaccgt atttattttc ctgaaaaaaa tgtgtgtgtg tttgcagaga      2220
     tgtaaagttt gcagtcaaac agttacagaa atcatttact cataagacta aaaatgttgt      2280
     tgatgtgtca gatatagatg aagatactgc agaatatgaa tgtgaaaatt ttgattttga      2340
     agaggacagt caaactgatt ctgttaactg agatgtaact gtaagtgatg aaagggttag      2400
     caacaatttc aatggcactg aggaacaagc tgaaagtaac ttggaggcaa gacatgaaga      2460
     gaaaggaagc cacaatttag tgaacgacgg aatttgaaga aaccttcttg ctactgtgaa      2520
     gattcagacc ataaaccaag aatgatgttg ctttgtgaaa caccaaggaa ctataaagaa      2580
     gcaatgcagt cagaaaattc tgaagcatgg aagaaagcaa tggaggaaga aataaatgct      2640
     ctgcagaaaa atgaaacatg ggaactagtg tacaaagaga aaccaaacaa gctaattgaa      2700
     aataagtggg tctttgctac gaaattaaat gcaaataatg aagtggttcg gtataaggct      2760
     cgcctggtgg caaaaggata cactcagcgc tttggaatag attatgttga cacttttagc      2820
     cctgttgcaa gatttgagac aatgagatgc ctgttgagtg ttgcagttca acatgattgg      2880
     tgtataaggc aatttgatgt gaggacagca tttcttaatg gtattttgaa ggaagaaata      2940
     tacatgtatc aaccagaggg ttttgacgat ggtacaggac gtgtatgcaa attactgaag      3000
     agtctatatg gtttaaagca agcctcaaaa tgttggtatg aatgtcttgt aaagtttctt      3060
     actgaatgta atttacggga gagtcattca gatccatgta tgttctatgg tgaaaaccta      3120
     gtactattgt tttatgttga tgatggactg gctatgggtt ccactgatgc aacatccaag      3180
     tttatagaac agttgggtaa acgttttcag attactgtgg aaaaggttga ttacttctta      3240
     ggtttacaaa tcaagaagtt tgacaactgc attcaaataa accagtcagc atatgtgaaa      3300
     agaattttag agaaatatgg tatggtggat gcaaaaccat tatctttacc cattgaacca      3360
     ggatggatac caggtgaatc acctcctttt aataatacca agctatatcg agaaatggtt      3420
     ggaagtttga tgtatttaac acaagctaca aggccggatt tatcatatgc tgttaatgtt      3480
     gcatcaagag ttcaagactc accaacacag gcacattttg cattgctcaa acggatactt      3540
     aggtatctaa agtcaacaat aacagatggt attcagttca tgaaagatga caactgtaat      3600
     attgaagctt acagtgatgc agatcatggt ggggacagag ggactagacg ttcaacaagt      3660
     ggcattctac tcaagttcca tggagggcca gttgtgtgga agagtaaatt acaaaagtgt      3720
     gttgctcttt cttcaatgga ggcagaatat gtggctgcaa gtgaagcctg taaatcactt      3780
     gtgtggttgg atcaacttct gaaagaaatt ggagccgttg atgaaacttc agttcctgtt      3840
     ttacaaatag ataaccaaag tgctatcaaa ttcattaacg gttcaaggtt ttatgaacgt      3900
     tcaaaacata tagaaacaag gtaccattat attcgtcaac tggttaaaga gaataaggtc      3960
     aatgtgagtt acataccaac taatagacag gcagctgata ttctgacaaa aggactaccg      4020
     tttacaaagt taaaattgat gaaggaactt gctggtatgg tgtctacttc acaatatata      4080
     tgaaaacatt gcgggagag                                                   4099
//
ID   Copia-3_LMi-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 19.11, Created)
DT   19-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-234
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3078-3078 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 234 BP; 65 A; 23 C; 40 G; 106 T; 0 other;
     tgtcaaagta tatgatttat ttattcaatg ttttatatat atgtactatt atttgtgtgt        60
     gtgttcttac tctttgaagg tgacaattga agattccatg aactagtttt aattagatgt       120
     gcagttgttc agttgtcttg gtgattgcta gaagtatctt aattatcgtt ctttagcgga       180
     atttttaata aatgtttatt ttcttcaaga aaattgcatt tgtgtttaac aaca             234
//
ID   Copia-3_RPr-I repbase;    DNA;    INV; 4109 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Copia LTR retrotransposon, internal region: consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4109
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3423-3423 (2015).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(94..2706,2679..3986)
FT                 /product="Copia-3_RPr-I_1p"
FT                 /translation="MSVLTLPVPILSANNFTNWKFRMNAILEKEQLVDVLE
FT                 SDPPTDAVAKKIFLINDAKAKAIIIQGISDKHLDIIQDSKTSKEMLQALKD
FT                 VFARSSSFSKLTLWRKLVNLKSERFENLEDHFLNFDKIIRELSDLGSTLNE
FT                 SDKICHLLLSLPEDYDTVVTALETVEKIKMDFVKARLLDHELKIKSQDISE
FT                 TGLKAQNNGCFRCGDSSHFQANCPKMVQGSNQTRGRGSNSRGYQSYHRARR
FT                 TRGSNFPSRQSQGRKFTERDSHANHAQSESEVDLFTTESCNSGMIFEEKSF
FT                 IYDSGASNHFVRGELKRFMKNITELENTVKIVQADGQLLTANEKGKLSLYC
FT                 QGQKFVIEALIVPGMKHNLLSSSKIASRGAKIVTDKSGTTVFIKNKPVLFF
FT                 KPKNGLFLFEADKFNEECFVAANEGDLWHKRMGHISIDGLTQLNLPTPHKL
FT                 CESCIEGKAKRQPFYENKKRATEIGSLISSDLVGPITPSTLNGEKYFQVIL
FT                 DDYSHFVVVKLLKNKSEAARNLISYIKEIKTQFGLSVRRIRLDNGGEAKSK
FT                 YFLNFVERNGIRMEYTISHSPQMNGRCERMNGVLLSKLRTKLIDSGVPKYL
FT                 WGEALKCTVYETNRSPTSVLPRGKTPSDLWNGRNDLSKLKIFGCRAWHTVT
FT                 PKPGKLEPRAVRAVMVGYCGGGYRLWLPKERKIIKSRDVKFDESIMVYKDN
FT                 NMVKENGQDTIVPIQGVENNPVIKINEEGEQVVQNDLQMGSMDKNAEDEIV
FT                 TTNRKKKKPGYLDDYELYTAYCFLLSTNEEPKTFEEAMESEEWKSAIHSEL
FT                 ESHEKLGTWTPGKLPEGMKAIETRWVFKIKEDGTKKARLVARGFQVPQEEW
FT                 EFSYAPVCRIPTVRLCYQDPNCSTLLSVAVQYSWILTQIDVPTAFLNGDLD
FT                 TEVYIKTPKGLKCQENTLILNRSLYGLRSAPKCWNNKFSSVMKNLGFTRSD
FT                 YDYCLYYKDNIYLVLFVDDAILAGTEENVNSLLKDLQKNFNTKNLGCPKSF
FT                 LGMEINHVRNGLHLSQTKMIDRLTKEFGMEVCRTISTPMEAKFKADESLDI
FT                 INDVPYRRLICSLMYISITTRPDITFSVSYLSRYLDKPTSQTWKAGLRILR
FT                 YLSCTKDLRLPISKNTGGLEGMSDADWGADQNDSRRSVSGFICFHAGNPIA
FT                 WYSKKQRCVAQSTMEAEYIAAGFAAQELVNLRGVLSDLSQVKRASSEVICE
FT                 KVLKSVKDVFNEKGQEPDEMKAVLKIDNASAISLANTFSNTKRGKHIEIKF
FT                 HFIKHLCLNNVIKIDYVCSKENIADLFTKALGAEKFETLRNSLLTN"
XX
SQ   Sequence 4109 BP; 1440 A; 637 C; 851 G; 1180 T; 1 other;
     ggttatgggc ccagttattc taaattaaaa tgtatattag tgttacggtt tacgtgatta        60
     atttaataat ttcaaatagt gcaggttata aaaatgtcag tgcttacttt gcctgtgcct       120
     atactctcag cgaataattt cacgaactgg aaatttagaa tgaatgcaat tcttgaaaaa       180
     gaacagttag ttgacgtttt agaaagtgac cctccaactg atgcagtagc aaagaaaatt       240
     tttctcatta acgatgcaaa agcaaaagcc atcataattc aaggtatttc cgataaacat       300
     cttgacatta ttcaagattc taaaacatca aaagaaatgc ttcaagcttt aaaagatgta       360
     tttgcgaggt ctagttcttt ttctaaacta accttatgga ggaagctagt aaacttaaaa       420
     agtgagaggt ttgaaaattt ggaagaccat tttcttaatt ttgataaaat tatcagagaa       480
     ctgagtgatt taggttccac gctgaacgaa agtgataaaa tatgtcattt gcttctttca       540
     cttccagaag attatgatac tgtggtcact gctttggaaa ctgttgaaaa aataaaaatg       600
     gattttgtga aggcacgtct gttggatcat gaactaaaaa ttaagtctca agatatttct       660
     gagacaggcc ttaaagctca aaataatggc tgttttagat gtggggatag ttcacacttc       720
     caggcgaact gtccaaaaat ggtccaggga agcaaccaaa caagaggacg tggatcaaac       780
     agtagagggt accaatcata ccacagagcc agaaggaccc gaggtagcaa ttttccttca       840
     cggcagagtc aaggaagaaa atttacagaa agggatagcc atgcaaatca tgctcaaagt       900
     gagagtgaag ttgatttatt tacaactgaa agttgtaatt caggcatgat cttcgaagaa       960
     aaatctttta tctatgacag cggcgcttca aatcattttg tcagaggaga gttaaaacgt      1020
     ttcatgaaaa acattacaga attagaaaat acagtaaaaa tagttcaagc ggatggccag      1080
     ctattgacag caaatgaaaa agggaagttg agcctttatt gccagggaca aaaattcgtt      1140
     atcgaagcat taatcgttcc tggtatgaag cacaatcttt tgtcttcttc aaaaattgct      1200
     agccgtgggg cgaaaatagt cactgataaa tcaggtacaa ctgttttcat taaaaataaa      1260
     cctgtacttt tcttcaagcc caaaaatggt cttttccttt ttgaagcgga taaatttaat      1320
     gaagagtgct ttgttgctgc caatgaagga gatctttggc ataaaagaat ggggcacatc      1380
     tcaattgatg ggctaacaca attgaattta cctactccgc acaaattatg cgaatcttgt      1440
     atagaaggca aggcaaagag gcaacccttt tatgagaaca aaaagcgtgc aacagaaata      1500
     ggaagtctta tttcaagcga tttagttggt cccatcacac cgagtacact caatggcgaa      1560
     aaatatttcc aggtaatatt agatgattat tcccactttg tagttgttaa attgctgaaa      1620
     aataagagcg aagcagctag aaacttgata tcatacatta aagaaataaa aactcagttc      1680
     ggtttaagcg tccggcgcat aagattagac aatggtgggg aagcgaaatc gaagtatttt      1740
     ttaaactttg tggaaagaaa tggcattcga atggaatata ctataagtca ttctcctcaa      1800
     atgaatggca gatgtgagag aatgaatggg gttctactct caaaattaag aactaaatta      1860
     attgattctg gggttcccaa atatttgtgg ggagaggcac taaaatgtac tgtttatgaa      1920
     acaaataggt caccaacttc agttttgcct agaggtaaaa ctccctcgga tctgtggaat      1980
     gggcgaaatg atctgtccaa attgaaaata ttcggatgta gagcatggca tactgtgaca      2040
     cctaagcctg ggaaattgga accccgagca gttcgtgcgg taatggtcgg ttactgtgga      2100
     ggtggctaca gattgtggtt accaaaggaa aggaaaataa taaagtcaag agatgtcaaa      2160
     tttgatgagt caatcatggt atacaaagat aataatatgg tcaaggaaaa tggacaagac      2220
     actatcgttc caattcaagg ggtagaaaat aatccagtaa taaagattaa tgaagagggt      2280
     gaacaagtag tgcagaatga cttacaaatg ggttctatgg ataaaaatgc agaagatgaa      2340
     atagttacta caaacagaaa aaagaaaaaa cctggatatc tggatgacta tgagctgtac      2400
     acagcttact gttttctatt gtcaactaat gaagaaccaa aaacgtttga agaggccatg      2460
     gaatcagaag aatggaaaag tgcaatacat tcagaattag agtctcacga gaaacttgga      2520
     acttggaccc ccggaaaatt acctgaagga atgaaagcta ttgaaacacg ttgggtgttt      2580
     aaaatcaaag aagatggaac caagaaggcg agacttgtgg ctcgtggatt tcaagttcct      2640
     caagaagaat gggaattctc ctacgcacca gtatgtagga tcccaactgt tcgactctgt      2700
     tatcagtagc agtccagtat agctggattt taactcaaat tgatgtcccc accgccttcc      2760
     tgaatggaga tttagataca gaggtctata ttaaaacacc taaaggttta aaatgtcaag      2820
     aaaatactct cattcttaat agatctctat atggtctccg ctccgctcca aaatgttgga      2880
     acaataaatt ttcatccgta atgaaaaatc ttggatttac acgatctgat tatgattatt      2940
     gtctttacta taaagataat atatacttag ttcttttcgt tgatgatgcg atactggctg      3000
     ggacggagga gaatgtgaat tcattattga aagatctaca gaagaatttt aatacaaaaa      3060
     acttaggttg tcctaaatcg tttttaggaa tggaaattaa tcatgttaga aatggtttac      3120
     acttgtctca aactaaaatg atagatcgtt tgacaaaaga gtttggcatg gaggtgtgta      3180
     ggacaatctc aacacctatg gaggctaagt tcaaggcaga tgaaagcttg gatattataa      3240
     atgatgtgcc atataggaga ctgatatgta gtctaatgta catctctata acaacaagac      3300
     cagatattac tttctctgta tcatatttga gtagatatct cgacaagcca accagtcaga      3360
     catggaaagc tggcctaaga attctacgtt acttaagttg tacaaaagat ctaaggctcc      3420
     ctatttctaa aaatacagga ggcttagaag gtatgagtga tgctgattgg ggagctgatc      3480
     aaaatgactc tagaagaagt gtcagtggat tcatatgctt tcatgctgga aaccctatcg      3540
     catggtactc aaagaagcag agatgtgttg ctcaatcaac aatggaggct gaatacatcg      3600
     cggcagggtt cgctgctcaa gagttagtga atcttcgtgg tgtgttaagt gatttgagtc      3660
     aagtgaaaag agcaagcagt gaggtgatat gtgaaaaagt gttaaaatct gttaaagatg      3720
     tgtttaatga gaaaggacaa gagcctgatg aaatgaaagc agttcttaaa atagataacg      3780
     ctagtgcgat atctttagca aatacatttt caaataccaa acgtggcaaa cacatagaaa      3840
     taaaatttca tttcatcaaa catctgtgcc taaataatgt tattaaaatt gactatgttt      3900
     gttcaaaaga aaatatagct gatctattta ccaaagctct aggagccgaa aaatttgaaa      3960
     ctcttagaaa ctctctgctc actaattgat tttttttaac atttaatatc ttgttaatta      4020
     ttttagttta tgtggatgtt gtgttattag tattcaattc gatgtttctt attgtagwca      4080
     ttaagtaact acatctcatt gagagaggg                                        4109
//
ID   Copia-3_RPr-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Copia LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-148
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3424-3424 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 148 BP; 33 A; 23 C; 27 G; 65 T; 0 other;
     tgttaagaaa aatattgttg ttatgttggc tgttgttggc ggtcttattg ttcttgtatg        60
     cgtttgctat gtgtgttctt ctgctcatct ctaatacacg tgttctgtgt taaaactgtt       120
     cttattaaac cccattaaat tcataaca                                          148
//
ID   Copia-3_SI-I repbase;    DNA;    INV; 3943 BP.
XX
AC   AEAQ01006153;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_SI_;
KW   Copia-3_SI-LTR; Copia-3_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-3943
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01006153; Positions     382    4324.
XX
CC   Positions [1393-1920] - Integrase core
CC   'ATTTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..3921
FT                 /product="Copia-3_SI-I_1p"
FT                 /translation="MMADNTRVTITKLNNDNYQVWKYKVELLLIKEDLWNV
FT                 VSQEPPAEVDAAWTRKDGQARATIGLLVEDNQFVHIRDKTTARDTWNALKT
FT                 YHQKATLTSKVYLLKRICSLKVTDDGNMEDHINNMLDLVNKLAALGEQLMD
FT                 HLIVAMMLSSLPDSYNTLITALESRAEEDLTLDLVKGKLIDEYKRRKATGT
FT                 LGESNESALKTSKESKEKGRGNQDCFFCKKYGHQKKDCYKYKKWKQNKEKA
FT                 NQAAENSCKDGSKSGEVCFHVNTKGKTLNVWFIDSGATSHMTNNKDFFEEL
FT                 DPTKKIEIRLADGESRKACGIGMGKLKCLNDKNQIIEVKVTDVLYVPSLEG
FT                 NLLSVKRLTERGLQVKFKSDKCYITKNGKIVAIADESSNLYKLRVSQQACV
FT                 VIQKHNKHCQHMWHKRFGHRDPEAVKQLANNALAMELKITDCGIRTTCKTC
FT                 IKGKITKKSFPKKSENRTSSTLDLIHTDLCGPMQTQTPGKKRYILTIIDDY
FT                 SRYTEVFLLQSKDETASYIKDYIQKVKTQFNRKPKIIRSDRGKEYINAELK
FT                 TFLRQEGIQTQYTAAYSPQQNGVAERKNRSLMEMARCMIIDAEMPNKYWGE
FT                 AVVTANYLQNRLPTKATEKTPHELWFTKKPNVNQLRIFGCTAFAHIPKEQR
FT                 RKLDVKAKELRFVGYAEDSKAFRLLDMTTDRIIISRDVIFIEDVEDGFEIT
FT                 ENENEIQIGLHKAPSEEIKEESTIEEPTNNEGFIEKPEEKFQDKNADALRR
FT                 SDRKNKGVPPHRYEETASIAMELQDPKTIQEAMSRTDRDKWKAAMDDEMNS
FT                 LNMNNTWELTELPNDRRPIGCKWIFKIKQDAVGNPSRYKARLVAQGFSQKY
FT                 GTDYDEVFAPVVRPITFRTLLVISGRENFIVKHIDAKTAFLNGELKEVIYM
FT                 KQPIGYEVPNKEHMVCKLNKSLYGLKQAARVWNEKIHKVLEEHEFRQSKTD
FT                 PCLYMKVIDNVWIFIIIYVDDIIIGGKEKKLVNDAIDMLRRRFDIVNLGNL
FT                 SNYLGMSIERDDKGIFYLSQPKYIKKIIDSVGLQEAKISSYPLDPGYENIE
FT                 NSEDVMENSAKYQKLIGELLYVAVHSRPDIAAAVSILSQRIKCAKYSDWTE
FT                 AKRTVRYLNGTIKWKLKLGGDTKEDEESPLIGYADANWAQDKADRKSNSGF
FT                 IFMLNGGTISWACRKQPCVALSTTEAEYIALAEACQEGIWIGRLLEEFGIT
FT                 SKTPLKIYEDNQSCLKLLCAKGFNNRTKHIDTKYHFVKQLKEDNVMDFVYC
FT                 QTSDMIADMLTKPLHGIRLRRLAELSGLKNWSG"
XX
SQ   Sequence 3943 BP; 1489 A; 635 C; 903 G; 916 T; 0 other;
     ggttatgggc ccagatacta gcgcatcaaa attgaggtta tgatggcaga caatacacgt        60
     gtaacgatta caaagctcaa caacgacaac taccaagttt ggaagtacaa agtcgagctt       120
     ctgttaatta aagaagattt atggaacgta gtgagtcagg aacctcctgc agaggtagat       180
     gcggcttgga cacggaagga tggacaggct cgcgcaacga tcggattgct cgttgaagat       240
     aatcaattcg tgcatattcg ggataaaact actgcacgtg atacatggaa tgcgcttaag       300
     acttatcatc agaaagctac attgacaagt aaggtatatc ttctaaagag aatttgcagc       360
     ttaaaggtaa ctgatgatgg aaatatggag gatcacatta ataatatgct tgatcttgtg       420
     aataaattag cggcattagg agagcaatta atggatcatt taatcgttgc aatgatgtta       480
     agtagtttgc cagattcgta caacacgctc attacggcac ttgaaagcag agcagaagaa       540
     gacttgacgc tggatctcgt aaagggcaag ttaatcgatg aatacaaaag gcgaaaagcg       600
     acaggaactt taggtgaatc aaacgaatct gcactaaaga catcaaagga aagcaaagaa       660
     aaaggtcgag gaaatcaaga ttgttttttc tgcaagaagt atggacatca aaaaaaggac       720
     tgttacaagt acaagaaatg gaaacaaaat aaagaaaagg caaatcaagc agcggagaat       780
     tcttgtaaag acggtagcaa atcaggtgag gtttgttttc atgtcaatac aaaaggaaag       840
     acattaaacg tgtggtttat cgattctggg gctacgagcc atatgacaaa taataaagat       900
     tttttcgaag agctcgatcc gactaagaaa attgaaatcc gattagcaga cggtgagtcg       960
     cgaaaggcat gcggaatcgg tatgggtaag ttaaaatgtc ttaatgataa gaatcaaatt      1020
     attgaagtga aggttactga cgttttatat gtacctagtc tagaaggcaa tttgctatcc      1080
     gtaaagagac taacagaaag aggtttacag gttaaattta agagcgacaa atgttatata      1140
     actaaaaatg gaaagatcgt cgccattgca gatgaatcat ctaacttgta taaactacga      1200
     gtatcacaac aggcttgtgt agtaattcaa aagcacaata aacattgtca gcacatgtgg      1260
     cataaacgtt tcggacatcg agaccctgag gcagtcaagc agctagcaaa taacgcactt      1320
     gcaatggaac tgaagatcac tgactgtggg ataaggacaa cttgtaaaac atgcattaaa      1380
     ggaaaaataa caaagaaatc ttttccaaag aaatcagaaa acagaacttc atcaacattg      1440
     gatcttattc acacggattt atgcgggcca atgcaaactc agacgcctgg aaagaagcga      1500
     tacatcctta ccattattga tgattatagt cggtatacgg aggtatttct attgcaaagt      1560
     aaggacgaaa cagccagtta cattaaggat tacattcaaa aggtaaaaac gcagtttaac      1620
     agaaagccaa aaatcataag atcagaccga ggaaaggaat atattaatgc ggaattaaag      1680
     acatttttaa gacaagaagg cattcaaacg caatatacag cggcttattc accccagcaa      1740
     aatggcgtcg ctgagagaaa aaatcgctcg ctgatggaaa tggcgcgatg catgataata      1800
     gacgctgaaa tgccaaataa atattgggga gaggcagttg tcacggcaaa ttatttacag      1860
     aatagattgc caacgaaggc tacagaaaag acacctcatg agttgtggtt cactaagaaa      1920
     ccaaatgtta atcaactcag aatattcgga tgtaccgcgt tcgcacatat tccaaaagag      1980
     caacgaagaa aactggatgt gaaggcaaaa gaactgagat tcgttggata cgcagaagac      2040
     tcaaaagctt ttcgtctact cgacatgact acggatagga tcatcataag cagagacgta      2100
     atattcatag aagatgttga agatggtttc gaaataactg aaaatgagaa tgaaattcaa      2160
     atcggtttac acaaagcacc atcggaagag attaaggagg agtcaacaat agaagagccg      2220
     acgaataatg aaggattcat tgaaaagcct gaagagaagt ttcaagataa aaatgcagat      2280
     gcactacgaa ggtcagacag aaaaaataaa ggagttccac cacacaggta tgaagaaact      2340
     gcaagtatag caatggaact tcaagatcca aaaaccattc aagaagcgat gtcaaggaca      2400
     gacagagaca aatggaaggc tgcaatggac gatgaaatga attcccttaa catgaataat      2460
     acgtgggaat taacggaact accaaacgac agaagaccaa taggatgtaa gtggatcttc      2520
     aaaatcaagc aagatgcagt tggaaatccg agcagatata aagcaagatt agttgctcaa      2580
     gggttttcac agaaatacgg aacggactat gatgaggttt tcgcacccgt ggtaagacca      2640
     atcacattcc ggacactact agtcatatct ggaagagaga actttattgt caagcatatc      2700
     gatgcaaaaa ctgcattttt aaacggagaa ctaaaggagg taatatatat gaagcagccg      2760
     ataggctacg aagtaccaaa taaagaacat atggtatgca aactaaacaa gagtttgtac      2820
     ggactaaagc aggcagcaag ggtatggaat gaaaagatac ataaggtact tgaagaacat      2880
     gagttcagac aaagtaaaac tgacccatgt ttgtatatga aagtgattga taatgtatgg      2940
     atttttataa ttatttacgt agatgatatc attattggag gtaaggaaaa gaaacttgta      3000
     aatgacgcca tagacatgtt gaggaggagg tttgatattg tcaatctcgg aaaccttagt      3060
     aattacttgg gaatgtcaat agaacgagat gataaaggaa tattttatct aagccaacca      3120
     aaatatatta agaagataat tgattcagtc gggcttcaag aagcgaagat ttccagttac      3180
     ccattggatc cagggtacga aaatatagag aactcagaag atgtgatgga gaacagtgca      3240
     aagtatcaaa agctgattgg agaactactc tatgttgctg tacattcacg accagacata      3300
     gcagccgccg tttcaatttt aagccaaaga ataaaatgtg cgaagtactc agactggaca      3360
     gaagctaaga ggacagtaag atatttaaat ggcactatta aatggaaact caaactcgga      3420
     ggcgacacta aggaagatga agaatcacca ctgattggat atgcggatgc aaactgggca      3480
     caagacaagg cagatcgtaa atctaatagc ggatttatct tcatgttaaa tggaggcaca      3540
     ataagttggg cgtgtcgcaa acaaccgtgc gtggcactct ctacaacaga agcagaatat      3600
     atagcgcttg cagaggcttg tcaagaagga atctggattg gaaggttgct ggaagagttc      3660
     ggaataacat ctaaaacacc tttgaagatt tacgaggata atcagagttg cctgaagcta      3720
     ttgtgcgcaa aaggtttcaa caacaggaca aaacacatcg atacgaagta tcattttgta      3780
     aaacaattga aggaagataa cgtaatggat ttcgtgtact gtcaaacatc agatatgata      3840
     gctgatatgc tgacgaaacc attacatgga atcagattga ggaggcttgc agagcttagc      3900
     ggacttaaga actggagcgg gtgatgtcat cggtgaggag gag                        3943
//
ID   Copia-3_SI-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   AEAQ01006153;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_SI_;
KW   Copia-3_SI-I; Copia-3_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-256
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01006153; Positions     126     381.
XX
SQ   Sequence 256 BP; 60 A; 64 C; 44 G; 88 T; 0 other;
     tgttggagta ttcatcatgt gaggcgctga ccaccgacga cattttttcc ctagaccagt        60
     tttgtctctc tcactctatc tctctctcgc tctattcatt cttcccttca tgagcttgct       120
     tttgtatcac aagtcgttca ttaaagatat tgcatattga actgtgtaat gtacagtgta       180
     cacgacgtgt catcataccc tgtatcctct cgagattcct gcgtgaaagg gaacattcag       240
     ctcattaaag tcaaca                                                       256
//
ID   Copia-3_TrVa-I repbase;    DNA;    INV; 4159 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-3_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4159
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 241-241 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..4145
FT                 /product="Copia-3_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MESERGRFPIFKGENYSDWKFRVKVLLDEKDLLRCIE
FT                 KPLEELLATVNSTENLVRPVIKREEKKCKSTLIQCIGDECLEYIKDKATSF
FT                 EIFKTLEDVFERKGIKTQLYCRKQLLSFKLDENDKLENHFLQFDKLIRNLR
FT                 EAGAHMSENDIVCHLLLTLPPSYDVISTALDTLDDSKLTVNFVKSKLLDHE
FT                 LKNCQTSDLNDTAFSGTKYKVSVTCNYCGRKGHYWRDCEKRKKNFKKNSKF
FT                 ENSRVEKVNICDGESDTSEVEEENEEEDEFVFLSSSDEPTSTVTWFLDSGA
FT                 TEHMTNDRSIFKTFNKLEKPVKIAIAEKGQTLIARFSGDVAAFTSTGQRVI
FT                 FQKILYVPELRQNLFSVRKIEEKGYKIIFFNGKAKIFKGNKLVFAASKLNR
FT                 LYEFNLIIPAEKVESCVAEEDLTTLWHKRLGHINKTSLTKMVQKNMVSGLP
FT                 LTAADISEDFQNNCEGCIAGKQTKLPFKSNMKGTTSKSLEIVHSDICGPIS
FT                 PKTYNNKRYLLTFIDDYTHFTIIYLLAQKDEFFNCFQDYESKVTTLHNLKI
FT                 INIRCDNAGEYKSNDFQNFVKIKGINVQYTVPYTPELNGKAERMNRTILEK
FT                 ARCLMLTSKVKKIFWGEAVLTCVYLINRSPTNSIVNSNLTPAELWYGKKPD
FT                 ISKLRVFGSIAYAHIPDQLRSKLDSKTRKCIMMGYSTNGYRLWDLEKKKLI
FT                 LARDVIFNEESVKDEFLPSTVEIEPDRGEQNGETDLLKKTSEDVEKPKEVN
FT                 DESAEQEEEGNEKVLPKRSDRIKQKPAWHNDYEFGALALLGDSTLDTPSTF
FT                 QEAMRSPQKDEWTQAIESELESLKTNETWELVKPPKDKNVIGNKWVFRIKT
FT                 DESGNPSKFKARLVAKGYSQIKNEDYTDIFAPVVKLSTVRTLLSIANHSNL
FT                 IVESMDVKTAFLNGFLDEELYMKQPEGCEDPSKPQLVCKLKRSLYGLKQAP
FT                 RAWNRRFHQFMQKQKFQQSKNDYCLYSRCSGNSKLYLLLYVDDILIIGDSK
FT                 DEVQKFKNCLSETFQMTDLGPLSNFLGIQIKRNESENILTFNQRKYILTIL
FT                 KKFDMENCNSVSTPIEPKLNLERGKEEKLTTKPYRELLGSLMYIMLGTRPD
FT                 ISFSLNYLSRFASCATDHHWKYLKRVLQYLKSTSDFELTFRRNLNGDALVG
FT                 FVDADWASDANDRHSTSGYLFKILDNCVSWTTKKQPTISLSSTEAEYIALS
FT                 YGACEGLWMKNLLTDLNIEVNTFKLNEDNQSCIYIAKDPQDHRRMKHVDVR
FT                 FHFVRELTQNQILQIEYISSEHQLADILTKGLPFPKFKKFRDAILGI"
XX
SQ   Sequence 4159 BP; 1462 A; 765 C; 823 G; 1109 T; 0 other;
     ggttatgggc cactgccgcg atttttcgga taaaaattta aatgtttaag cattttctaa        60
     tcgaaaatgt tttttttaag agtgtgaaac aagtatgata cttgatacga ttgaattgat       120
     acgggatatg gatgtatgat acgtccaaaa caattcgtga tacgaggttt gtttagtgcg       180
     gtgaaaattt aacctcaact caattctgat aatcagaagg tatggaaagt gaaagaggaa       240
     gatttcccat ctttaaggga gaaaattata gtgattggaa gtttcgcgtt aaagtgttgc       300
     tggatgaaaa agatctttta cgttgcattg agaagccgtt ggaagaacta ttggccaccg       360
     tcaacagtac agaaaatttg gttcgtcccg taattaaaag agaagaaaaa aaatgtaagt       420
     ccacccttat acagtgtatt ggtgatgagt gcttggaata cataaaagat aaagcaacat       480
     cctttgaaat ttttaaaacc ttagaagacg tttttgaacg gaaaggcata aaaactcaac       540
     tttattgtcg aaaacagctg ctaagtttca aacttgacga aaatgacaaa ttagaaaatc       600
     actttctcca gttcgataaa ctaataagga acctcagaga ggctggtgct catatgtctg       660
     aaaatgacat tgtttgccac ttattactaa cgctaccacc tagttatgat gtcatcagca       720
     ctgccttaga cacgctggat gacagcaaac taactgtcaa tttcgtaaaa agtaagctat       780
     tagatcacga actgaaaaac tgtcagacca gtgacttaaa tgatacagct ttttcaggta       840
     ccaagtacaa agtaagtgtc acttgtaatt actgtggtcg taagggccac tactggagag       900
     actgtgaaaa aagaaagaaa aatttcaaga aaaattcgaa atttgaaaat tcgagagttg       960
     aaaaagtaaa tatttgcgat ggagaaagtg acactagtga agttgaggag gaaaatgaag      1020
     aggaagacga gtttgtcttt ctatctagta gtgacgagcc gacttcaaca gtcacgtggt      1080
     ttctcgactc tggtgccact gaacacatga caaatgatag gagtattttc aaaacattca      1140
     ataaattgga gaaacccgtc aaaattgcta tcgctgaaaa gggacagact ttaatcgcta      1200
     gattctctgg cgatgttgcc gcatttacaa gcactggtca acgcgtcatc tttcaaaaaa      1260
     tcctttatgt acctgaactg agacaaaact tattctctgt tcgaaaaata gaagaaaaag      1320
     ggtacaaaat tatttttttc aatggtaaag ccaaaatttt taaaggtaac aaattggtct      1380
     tcgcagcttc caaattgaac agactctacg aatttaactt gatcattccc gcagaaaaag      1440
     ttgagtcttg cgtcgcagag gaagatctca caactctgtg gcacaaaagg ctaggacata      1500
     tcaataaaac tagtttaaca aaaatggtcc aaaaaaatat ggtatctgga cttcctttga      1560
     ctgcggcaga catcagtgaa gattttcaaa ataactgtga aggttgcatt gcaggaaaac      1620
     aaacaaagtt acctttcaaa tcaaatatga aaggtaccac ttcaaaatct ttggaaatag      1680
     tgcattctga tatctgcgga cccatcagcc caaaaactta caataataaa aggtatctcc      1740
     tcacctttat tgatgattac actcacttca caatcatcta cctcctcgct caaaaagatg      1800
     aattttttaa ctgttttcaa gactacgaat caaaagtaac aacactgcac aacttgaaaa      1860
     tcatcaatat caggtgtgat aacgctggtg aatataaaag taatgacttt cagaatttcg      1920
     tcaaaattaa gggaatcaac gttcagtaca ccgttcctta tacacctgaa ttaaatggca      1980
     aggcagaacg gatgaaccga actattctgg aaaaagctcg ttgtttgatg ttgacctcca      2040
     aagtgaagaa aattttttgg ggagaggctg ttttaacctg cgtttattta ataaatagaa      2100
     gccctacaaa tagcatcgtt aactcaaatt tgacacctgc ggaactttgg tatggtaaaa      2160
     aacctgacat ttcaaaatta agagtattcg gaagcattgc atatgctcat atcccggatc      2220
     agttacgatc aaagctcgat tcaaaaactc gaaagtgcat catgatgggc tactccacta      2280
     acggctatcg tttgtgggat cttgaaaaga aaaaacttat tcttgcccga gatgtgatat      2340
     tcaatgagga atcagtgaaa gacgaatttc taccatccac agttgaaatt gaacccgatc      2400
     gtggtgaaca gaatggtgaa accgatcttt taaagaaaac cagtgaagat gtagaaaaac      2460
     caaaagaagt aaatgatgaa agtgcagaac aagaagaaga aggaaatgaa aaagtgttgc      2520
     caaaacggtc agaccggatc aagcaaaagc cagcctggca caacgattat gagtttggcg      2580
     cgctagcatt gcttggtgat tcaacccttg ataccccttc aacttttcaa gaggcaatga      2640
     ggtcacctca aaaggacgag tggactcaag ccattgagag tgaacttgaa tccttgaaaa      2700
     caaacgagac ttgggaactt gtaaagcctc caaaggataa aaatgtaatt ggtaacaaat      2760
     gggtttttcg aattaaaacg gatgaatctg gtaatccctc aaaatttaaa gctcgcctcg      2820
     tcgcgaaagg atatagtcaa atcaagaatg aagattatac agacattttt gctccagttg      2880
     tgaaactttc gactgttaga acccttctgt ccattgcaaa tcattcaaac ttaattgtcg      2940
     agtcaatgga cgtcaagaca gcctttttaa atggattctt agacgaagaa ctgtacatga      3000
     aacaacctga aggctgtgaa gatccatcaa aaccgcagct tgtgtgcaaa ttaaaaagga      3060
     gcttgtatgg tctgaagcag gctcctcgag catggaaccg acgattccat cagtttatgc      3120
     aaaagcaaaa atttcagcaa tcaaaaaatg actactgcct gtactcacga tgctctggaa      3180
     attctaagtt atatttactt ctatacgtcg atgacatatt gattatcggg gatagcaagg      3240
     atgaagtgca aaaatttaaa aattgtctca gtgaaacgtt tcaaatgact gacttaggcc      3300
     cgctttcgaa cttcttgggt atacaaataa aacgaaatga atctgaaaac atcttaacct      3360
     tcaatcaaag aaaatacatt ctaactattc tcaaaaaatt tgacatggaa aattgcaatt      3420
     ctgtttccac tccaatcgag ccgaaattga atctcgaaag aggaaaagaa gaaaaactga      3480
     ccactaaacc atacagggag ctactaggat cactcatgta catcatgctc gggactcgac      3540
     cagatatcag tttcagcctg aattatctta gccgctttgc aagttgtgca actgatcatc      3600
     attggaaata tctgaagcga gttttacagt acctgaaatc aacttcggat tttgaactga      3660
     ctttccgaag aaacttaaac ggcgatgctc tggttggatt tgttgatgcc gattgggcta      3720
     gtgatgcgaa tgataggcac tcgacatcag gatatttatt caaaattcta gacaactgcg      3780
     tgagttggac caccaaaaag cagccaacaa taagcttatc atccacggaa gccgaataca      3840
     ttgccctcag ttatggtgcc tgcgagggac tttggatgaa aaacttactg actgacttaa      3900
     acatcgaggt gaacaccttt aaactaaatg aggacaacca atcgtgcatc tatatagcga      3960
     aggaccctca agaccacagg cggatgaaac atgtagatgt gcgattccac ttcgttcgag      4020
     aactcactca aaatcaaatc ttacaaattg agtacatcag cagcgaacac cagctcgcag      4080
     acattttaac caagggctta ccttttccaa aattcaaaaa gttcagagat gccattttgg      4140
     gaatatgatt gaggggggc                                                   4159
//
ID   Copia-3_TrVa-LTR repbase;    DNA;    INV; 102 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-3_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-102
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 224-224 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 102 BP; 33 A; 10 C; 16 G; 43 T; 0 other;
     tgttaaagta tcaatcatat gtttgtagat gtattgaaaa gttttattgt tgtcatggtt        60
     gccagatcat aattacagtt taatctgctt aaatatttaa ca                          102
//
ID   Copia-40_AA-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   supercont1.304;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-40_AA_;
KW   Copia-40_AA-I; Copia-40_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-120
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.304; Positions  829744  829863.
XX
SQ   Sequence 120 BP; 39 A; 22 C; 23 G; 36 T; 0 other;
     tgaagagacg tatcgaagga gcagttgatt ttatgaccac cttggatact gggagttgtt        60
     tatcctctat caactagtga aaatttaatc attaataaac caaccttgct actgagcaca       120
//
ID   Copia-41_AA-I repbase;    DNA;    INV; 4073 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 24.01, Created)
DT   17-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-41_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4073
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4073
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 105-105 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..4070
FT                 /product="Copia-41_AA-I_1p"
FT                 /translation="MEKVQVPKLNGSNYSSWKFSTELLLIREDLWKFVTKP
FT                 RPEEVAATENAPGNAAAIDAWDSGDQRARATIGLLMDSNQHGLIKQTKTAR
FT                 EAWERLMDHFEKPTLTSKVSYLRNLIAKRYCEGDDMEKHVNEMEDIFDRLS
FT                 VAGLALDGQLQVALVLSSLPKTFNTLTTALESRTDDELTLDVVKTKLIDEV
FT                 TKQGSFGESVLKAGSGKKVIVCHYCKKPGHKQRECRKQASDQDSETKSDQK
FT                 HRKNPSKAKVVRDTTNGSCAFTAKGTXRTGSWIVDSGATSHMCSERCSFLN
FT                 LDEXIHEKVTLADGTMTAAKGKGTCEVDCCDLEGNKRSITLSDTLFVPGLE
FT                 SNLISVRKLVAKGGKVIFDTEDCRIMKGEQVAAVAVVSGGLYCIKNAHNAM
FT                 KIDEKMHTRNCQHVWHRKLGHRDNDAVQELFRKKLATGGTLQDCGIRSICE
FT                 CCQEAKFPRLPFPQQSKNRSKQPLDLLHVDVCGPMKNVTPGGCRYYLTVTD
FT                 DYSRYTTVFFLREKSDVEEKLKHFVMEVKTTFGRPPKVIRSDNGGEFKNKS
FT                 LETFFKKEGIRQQFTTPHTPQQNGIAERKNRTLNEMARCMLLDAGLPTKYW
FT                 AEAVNTASYLQNRLPTRSLEVTPYEAWWGEKPDLSHVQPFGTDAYVWIPKQ
FT                 NRTKLDAAAQKMTFVGYSTQQKAXRFLDRSSGCVINSRDARFLPTRSSPAD
FT                 EETNGSIIEYHFPSTDNSKLNSFPIVAGDVLGELADDEEEEVLASDQRSNH
FT                 EEGRDRNDTSIESHEDTTLTEANERPLNAPRGPLSTSTPIRVSSRATKGVP
FT                 PFRFRETSSLASQRTMEPRTLAEALASAEREQWKTAMDEEYAAQQENSTWD
FT                 IVRLPANRKPIGCRWVFQKKFDEHGKVARYKARLVAQGCSQKYGTDYDEVY
FT                 APVAKHTTLRALLTIAARQKMQVKHVDIKTAYLNGKLSETIYMRQPPGYES
FT                 GNPDDVCHLRRSLYGLKQAGRVWNRTITDVLKELGYEATEADNCLFTKTDG
FT                 SSFILLYVDDMLIVTKEDREYERVRKHLERNFKISCLGNVKNYLGIHIERQ
FT                 EDGSFLLSQESYIERMLFKFEMEQAKPSPIPMDPGYVTAEQKEEKKMATAE
FT                 KYQSLVGGLLYVAVCTRPDLAITASILGRKVSKPTESDWTEAKRALRYLKG
FT                 TAKQKLKLGGSGNLKGYADADWAGDRTDRKSNSGFLFKLGEGTISWTARKQ
FT                 ECVTLSSTEAEYVALAEASKELLWLLKLMRGLGLDIQHPVTIHEDNQSCIS
FT                 MLSAEGGTRRTKHIDTRYNFVRDLATSGIVEVKYCPTEDMLADVLTKPLSR
FT                 IKLRKMREEIGLQNIVLEE"
XX
SQ   Sequence 4073 BP; 1148 A; 940 C; 1154 G; 827 T; 4 other;
     tgggcccagt gcttgggcat ccattgccgt agwaaccgat caacaaggtg aaaatttttt        60
     ctgaagctga agccgaaatg gagaaagttc aagtcccgaa gctcaatgga tcaaattata       120
     gcagctggaa gttcagcacc gaattgctgc ttatccgaga agacctttgg aagtttgtca       180
     ccaagccccg accggaagaa gtagctgcga cggaaaacgc tccggggaat gctgctgcta       240
     tcgatgcttg ggattccgga gatcaacgtg ctcgagcgac gatcggtctc ttgatggaca       300
     gcaaccagca tggcctcatc aagcagacga aaacggctcg tgaagcatgg gaacgattga       360
     tggaccattt cgagaagccg acgctgacat ccaaggtatc gtatctgcgg aatttgattg       420
     ccaagcggta ctgtgaaggc gacgacatgg agaagcatgt gaacgaaatg gaagatattt       480
     tcgaccgtct ctccgtggca ggactggcac tcgacgggca gctgcaggtt gcgctggtgc       540
     tgagtagtct tcccaaaacg ttcaacaccc tgacgaccgc gttggaaagc cgaacggacg       600
     acgagctgac gctggacgtc gttaagacca aactgatcga cgaagtgacg aagcagggta       660
     gtttcggcga atccgttctg aaggctggat ccggtaagaa ggtaattgtt tgccactatt       720
     gcaaaaagcc gggtcacaag caacgggaat gccgcaaaca agccagtgat caagattcgg       780
     aaacgaagag cgaccagaaa caccggaaaa atccatccaa agcgaaggtg gttcgtgata       840
     cgacgaatgg cagctgcgct tttacagcga aggggaccma gagaaccgga agctggatcg       900
     ttgactcggg ggcgacatcg cacatgtgct ccgagcggtg ctcctttctc aacctggatg       960
     aakccataca cgaaaaagtt actctggccg acgggacgat gacagctgcg aaaggtaaag      1020
     gtacgtgcga agtggattgc tgcgatctgg aaggtaacaa acgttcaatt acactttcgg      1080
     atactttgtt cgtgccgggt ttggagtcga atttaatttc ggttcgcaag ctcgttgcta      1140
     agggcggaaa ggtgattttt gacaccgaag actgtcgcat catgaagggt gagcaggttg      1200
     ctgcggtggc ggttgtgtcc ggtggattgt attgcatcaa gaacgcccac aacgccatga      1260
     aaatcgacga gaagatgcac acgcggaact gtcagcatgt gtggcacagg aagcttggtc      1320
     accgggataa cgacgccgtc caagagctgt ttaggaagaa gctagcgacc ggtggaacac      1380
     ttcaagattg tggtattcgg tccatttgcg agtgctgcca agaagcgaag tttccaagac      1440
     tcccgtttcc gcagcaaagc aagaatcgat ctaaacaacc gttggatctg ctccatgtgg      1500
     atgtgtgcgg tccgatgaaa aatgtcaccc caggaggatg tcggtactac ctcacagtca      1560
     ccgacgacta ttcccgttac acaaccgtgt ttttcctgcg ggagaaatca gacgttgaag      1620
     agaagctgaa acattttgtg atggaggtga agactacgtt cggcaggccg ccgaaggtca      1680
     ttcgttccga caacggtggt gagttcaaga acaagtcgtt agagacgttc ttcaagaagg      1740
     aaggcatcag gcagcagttc actacaccac acacccctca gcaaaatgga atcgcagaac      1800
     gcaaaaaccg cacgctgaac gaaatggcgc ggtgcatgct tctggatgca ggattaccga      1860
     cgaagtactg ggcggaggct gtgaacaccg caagttacct tcaaaatcga ttgcccacga      1920
     gatcactgga ggtcacacca tacgaagcat ggtggggaga aaagccggat ttaagccacg      1980
     tgcagccgtt tggtactgac gcgtatgttt ggattccgaa gcaaaaccgg acgaagttag      2040
     atgcagcagc ccagaagatg actttcgtcg gttattccac acagcagaag gcatwtcgtt      2100
     ttttggatag gagctctggg tgtgtcatca acagccgaga tgctcgtttc ttgccgacgc      2160
     gaagttcacc agccgatgaa gaaactaatg gaagtatcat cgaatatcac ttcccttcga      2220
     ccgacaattc caaacttaat tcctttccta tcgttgcagg ggacgttctc ggtgagctag      2280
     cagacgacga ggaggaagag gtacttgcgt cggatcaacg atcgaatcac gaagaaggca      2340
     gagatcgaaa tgatacgtcg atcgagtcgc acgaagacac tacactcacc gaggccaatg      2400
     aacgtcccct caacgcaccg agaggacctt tgtcgacgag tacgccgatt cgtgtgtcaa      2460
     gccgtgcaac taaaggagta ccaccgtttc gtttccgaga aactagcagc ctagcaagtc      2520
     agcgtacgat ggagccgagg acgttagcag aagctttagc gagcgcagag cgggaacaat      2580
     ggaagaccgc gatggatgag gagtatgcag cacagcaaga aaactccacc tgggatatcg      2640
     tccgtctccc cgctaaccgc aaaccaatag gctgccggtg ggttttccag aagaagtttg      2700
     acgaacacgg aaaggtagca agatacaagg ctcgattagt tgcccaggga tgcagccaaa      2760
     aatatggaac cgactatgac gaggtctatg cgccggttgc caaacacacc acgttgcggg      2820
     cacttttgac aattgcagcg cgccagaaga tgcaggtgaa gcatgtcgac atcaagacgg      2880
     cttatttgaa tggcaagctt tcggagacca tttacatgcg tcaaccgccc ggatacgaat      2940
     ccggaaatcc cgacgatgta tgccatttga ggaggagctt gtatggcttg aagcaagctg      3000
     gaagggtctg gaaccggact atcaccgacg tcttgaagga gttgggatat gaagccacgg      3060
     aagccgacaa ctgccttttc acgaagacag atggatcatc gttcatccta ctctacgtag      3120
     atgacatgct gatcgtcacc aaggaggaca gggagtatga gcgagtacga aagcacctgg      3180
     aaagaaattt caaaattagt tgtctgggta atgtgaagaa ttaccttggc attcacatcg      3240
     agcggcaaga ggatggaagt tttcttctca gtcaagaaag ctacatcgaa agaatgcttt      3300
     tcaaattcga aatggagcaa gcgaaaccat caccaattcc gatggatcca ggatacgtca      3360
     ccgcagagca aaaggaggag aagaaaatgg ccaccgccga aaagtaccag agcctggtgg      3420
     gaggtttact ctacgttgcc gtttgcacgc ggcctgatct ggcaataaca gcgtccattc      3480
     ttgggcgtaa agtcagcaaa ccgacggaaa gcgattggac ggaagcaaag cgagcgttgc      3540
     ggtatttgaa gggtaccgct aaacagaagt tgaagctagg aggaagcggc aatctcaagg      3600
     gatatgcgga cgccgattgg gcaggcgacc gaaccgaccg gaagtccaat tccggatttt      3660
     tattcaaact tggagaagga accattagtt ggacagctcg aaagcaggag tgtgtgactt      3720
     tgtcttccac cgaagcggaa tatgtcgcac tcgccgaagc cagcaaggag ttgttatggc      3780
     tgctaaagct gatgcgagga ttgggcttgg acatccaaca cccagtgacc atccacgagg      3840
     acaaccaaag ttgcatcagt atgctgagcg ccgaaggtgg gaccagacgg acaaagcaca      3900
     tcgataccag gtacaatttc gtccgggatt tggctacgtc tgggatcgtt gaagtgaagt      3960
     attgtccgac tgaggatatg ttggcggacg tgctaacaaa acccttgagc cggatcaaac      4020
     tgaggaagat gcgggaggag atcggcctgc agaacatcgt ccttgaggag gag             4073
//
ID   Copia-41_AA-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   17-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-41_AA_;
KW   Copia-41_AA-I; Copia-41_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-142
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 964-964 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 142 BP; 47 A; 24 C; 28 G; 43 T; 0 other;
     tgttgaagta ggcgcatgtg caagtgcgat attcaagcat gccatggaat aattagagta        60
     taagttaatt cgaaataaac tctcagttat cgttagacca tcaaccaagt cggttatact       120
     ttcatttaac tccaagaggt ta                                                142
//
ID   Copia-42_AA-I repbase;    DNA;    INV; 4232 BP.
XX
AC   .
XX
DT   04-JAN-2019 (Rel. 24.01, Created)
DT   04-JAN-2019 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-42_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (04-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4232 BP; 1292 A; 778 C; 1066 G; 1096 T; 0 other;
     ggttatgggc ccagaataag aatccaataa gatttctacg aagttaaatc taataagatt        60
     attacttgtg atctattgga ttcgagcttc tgataaagat ggacaaagta aggcgtgtga       120
     tggttccggt attcagagga gatgagaaat catttccgtt ctggctcaaa cgaatggaac       180
     accacctttt acaagaggaa ttgttttaca ctctcgaaaa acttcctagc gacgaagtct       240
     atgccacgcc ggaagcggat gctgcggctg aggctcaaag gaaaataaaa atgcaaaagc       300
     gattaaaaga tgatggcgcc gccattaatg aactttttat ggctattggt gatgaagcca       360
     tggcccatgt atttgaatgc aaatttgcca aagaaataat tgatcggcta aaatgcatct       420
     accaaccgaa aggaactgta gccatgctcg ggcttcgttc ccggttgtat actttgaaag       480
     atggttcata tgcatcacta atggaactat tccaggcaca tgatgaattg atccggcagc       540
     tcgagggtat gggtgaaata gtttcggata cggataagct taatacgcta ttggtggcca       600
     tccccagtgg atatcggcac gtagtgacag cactctcggt tttacggaag gacgacttga       660
     acgcgatggc tttggaggca gtgaagagaa tgttcctgga tgcggaagtg gagcgcgaca       720
     atgcagctgg cccgaaccac ggaagagtgc ctgttgcact ggtaggtaac cgtcagcgaa       780
     tggatccccg agagaagccg aaaagacaag taacttgctt cgaatgcgga aaagttggcc       840
     ataagaagaa gtcatgcttc gtcttgcggc ggaagaaggc acgggagcaa cgaccagacc       900
     caaaccaatc agcaaggacg cgggacattt cggcccagcg tgtggcttta gtagctcgcg       960
     gaggggggtc gttcatggta cgtgtaccgg tgacctactc tgtggccact gaaggcaaaa      1020
     agagatccga gacacgcttg gaatggaaga cgaaagaaga catcaagcaa gatcagcgag      1080
     tccggaatat ggcgacgcac gagatgccag tgaaggtacc aacgagtttc ccctgcttcc      1140
     tggacagtgg tgcctcggag cacatgctcc gagaaatgcg cgcctttaac gatttgtggg      1200
     actgcgacga ggtaagcatt gctacggcac aggagggcgc aaatcttgtt gccaaacaac      1260
     gtggaaatgt catgctccga agccaagttg gacagaataa agtagtattg gacttgtaca      1320
     atgtgctttt tattcccggc cttcactgta atttgttatc cgtctctcgc attgagtccg      1380
     ccgggaagtc agtccacttt gagaaaggtt cagttttgat tcgtgacgaa gtcggaaagg      1440
     tagtcgcaag aggggtgagg gtcggtggac tctaccaact cgatgtggat cttgttgatt      1500
     ttcacgacaa agcttttctg gggaaaacaa acaccagttt gactgtttgg cacaaacgtt      1560
     ttggccattt gggtgatgca aatctgttga agcttgccaa ggacaaaatg gttgaagggt      1620
     tggatttcca accgtcttca ttggcatgtg attccgacat ttgcaaaccc tgtatagaag      1680
     cgaaacagac aagagatcct ttcaacggag gtagcagacc aaggtccagc cgacctttgg      1740
     aacttgtgca ctcagacgtt tgtggacaga tgccagaaaa gacacacgac gggtacaaat      1800
     attttgtgag ttttatcgat gattacacgc actttgtgat ggtgtatctg ataaaaagta      1860
     aagatgaagt tctgctaaag ttcaaagaat ttgaagcttt tgctacgtct catttctcag      1920
     ttcgcatatc caaactgaga accgataatg gtggggaata tttcggtaac gaatttcagt      1980
     cgttttgccg tgaaagagga attttgatgg ttccaacggt cccttacaca cctcaacaaa      2040
     atggtgtgag tgagcgtatg aaccgcacac taatggaaaa agtaagaagt atgttaaatg      2100
     acagcggtgc tccagctcaa atgtgggggg aagctcttta tgtagctact tatgtgacaa      2160
     acagaagtcc gaccagctca ttgacggaag caaaaacgcc gtacgaaatg tggttcgggt      2220
     cggttccacg ggtaagaaat ctcagagttt ttggatgtgt ctcctatgca cacatcgtga      2280
     aagaacgccg gacaaagttg gacaaaaaga gtgagttact gggttttgtg ggctatgctc      2340
     ctaatgggta tcggctttgg aacagcgcaa aaagaacagt tatcgtttca agggatgtcg      2400
     tatttgatga gtctaaatca ttttttaacg gttgtggtca aacggaagct aatcatttcg      2460
     aagacaatgt ggcagatttg ccgattgtag aaatcatcga aacacgtgac caaactgaag      2520
     tcaatttgaa tgaagataat gacgaagcta gtgtaatatc atcggaaaat ttcgaacaag      2580
     ctacatctga tattgattct gagaacgata gagatgaaaa tgtgttgcgt cgaagccaaa      2640
     gaaatacaag agcgccccgt tggcttgatg aatacgaaac ttcttttacg gcaactgatt      2700
     ctatcaataa cgttccgcag gacatcaagg agctcaagaa acgtgatgat tggccaaaat      2760
     ggagggatgc aatcaaggag gagttgcaat ctttatctga gaacaacaca tggacattag      2820
     ttggcagtgt tccggaaggg agaaaagcca ttaattcgat gtgggtgttc atgataaaaa      2880
     tgaatgataa ctcctaccgg tacaaagcac ggctagtggc aaaaggttgt tcgcagcgtc      2940
     ctggtatgga tttttgtgaa accttttcgc ctgttgccaa aatgaccagt gtgcgtacac      3000
     ttttggcaat cgctgttcaa aagaagtgga tcatccatca gatggatgtg aaaaccgctt      3060
     ttttgaacgg gtttcttgat gaaacaattt atatgagact gcctaacttg gatgatgaag      3120
     gcagtaaaat ttgcaaatta aacagaagta tttacggttt gaaacaagct ggcaggagtt      3180
     ggaatattag attcgacgaa acaatgaaag aaatgaattt tcggagacta aatagtgatt      3240
     cttgcgttta tgtaagtaaa aacggaaaaa tcattatcat tttatatgtt gatgatattt      3300
     tgatttttgg ggaagagttg gaagaggttc gttgggtcaa aaatgaactt tccaagcatt      3360
     tcaaaatgaa ggatctgaat gaggtgagta atttccttgg tttggatatt cattttgatg      3420
     cagctgttgg aagaatgaca ttatcccaag aatcatacat cgataaggtt ttgcgaagat      3480
     ttagtatgtc tgattgcaac ccggtttcta ttcctatgga tccgaatatt aaatggaaga      3540
     aatcaggtaa tcgaaccaaa gaaccgttta aagaattgct tggatgtctg caatatttgg      3600
     ccctcatctc aaggccggac ataaccgttt cagtcagtat tcttagtcaa tttcagagtg      3660
     aaccgggaga agaacattgg acaggactca agcgtattct ccgttacctc aaaggaacga      3720
     agcagctacg gatgatatac gaaaggtcga acgaatcggc ccccttgacc ggttttgcag      3780
     acgccgattt tgcaaacgac gaagaaggac gaaaatcgaa ttcgggatgc ctatttatgg      3840
     tgtatggaaa cgtcgtatct tggagcagca agcgtcaaca agttgtgact ctttcatcaa      3900
     ctgaagccga actcgtttct ctttgcaatg cgtctaaaga aggtgtatgg ttgtccaaat      3960
     tattgagtga gattggaatt cattcaattc cattcactat atttgaagac aatataccct      4020
     gtattagaat tgcagaggaa ccacgagaac atcagaggac gaagcacgtg gacgtaaaat      4080
     tcatgtacgt tagggaacag ataaaggaga agaagcttat tgtgaaatat gtgccgaccg      4140
     ttgaccaaat tgctgattat tttactaaac ccctagctag agcaaagttt gacaaattta      4200
     caaaagaatt gaatatgaaa attgagggga ag                                    4232
//
ID   Copia-42_AA-LTR repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   04-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-42_AA_;
KW   Copia-42_AA-I; Copia-42_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-468
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 468 BP; 124 A; 88 C; 87 G; 169 T; 0 other;
     tgttaaattt caatttatca tttagattta gtagggatca tttccaatca gattttctct        60
     caccgccaaa ggcggagcaa tatctctctc atttagtttt tgctctctcc cgtctgtagt       120
     gtacacaagt aaaataacga taccaatcac taatgtacct tgtagtccaa taggtagtag       180
     ggacctcatg actaatcaat gtatcctttg tatatgtaca gaattcttgt gaatacatag       240
     ttttatactt tttctaagaa tttctgagta ctatttatgg atgttcgagt ggtaggatta       300
     ccatcgaact ttatgagaaa agtcttttgt gtttctagct tggttggagg aagtcaggca       360
     cagtctgact ctttcctcgt ccactttggt tggctgacgt atgctgtgga ggaagttttt       420
     cctcaagcat acttgcggca ttccactcat tgaatcaaca ttctaata                    468
//
ID   Copia-43_AA-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-43_AA_;
KW   Copia-43_AA-I; Copia-43_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-177
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 965-965 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 177 BP; 44 A; 35 C; 35 G; 63 T; 0 other;
     tgaactagta tcactgtttc acataatacc gtggattcag tgtgacatat tctttgcagt        60
     gtataaccta cgatcaataa agtaaatacg cagtttgtaa tcggtcgggt cgtgttttta       120
     ttccgtcgga ttccgagtta ttccggattg tttaatactc tgcgaattgt cctccca          177
//
ID   Copia-44_AA-I repbase;    DNA;    INV; 4116 BP.
XX
AC   .
XX
DT   21-FEB-2012 (Rel. 17.12, Created)
DT   20-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-44_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4116
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2589-2589 (2012).
XX
RN   [3]
RP   1-4116
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..4072
FT                 /product="Copia-44_AA-I_1p"
FT                 /translation="MADSRFAFAKLNGTNWSTWKVRIEMLLQREDLWTVVS
FT                 EPVPDEEGQDDEWKTADRKAKATLVLLIEDNQLPLIKHCASAHDVFRALKS
FT                 YHQKTTRSVRVSLLKKLCAVNLPERGNLEEHLREVDELFDRLDAAGTELDK
FT                 DTKVCMLLRSLPPSFDGIVAALDSREDDDISLDIVKSKLMDEYHRRLEREC
FT                 GSSGSKSEKAMRSVDNKTKEFRVCHFCKRPGHLRRDCRKFKAQKAEGSGEK
FT                 EAPKAKAAQSDGRNVAFTGSESVRSSSWVIDSGASAHMTNSREFFDTLSEF
FT                 SGGWITLADGQKTKILGEGSGVISGVDGAGQPVKIDMKSVKFVPGLSTSLI
FT                 SVAKLAEKNLAVSFDGEGCRIADAGGDVVATGYRYGGLYYLRTLEVSNKAV
FT                 AGEHRENCQHQWHRRFGHRDWAATERLFKENLATGVXVGDCGMRLVCECCL
FT                 EGKSARQPFPPVTERKSKRILDIVHTDLCGPMKTTTPSGNRYVLHLIDDYS
FT                 RFTVTYLLKHKSDAAEHIKDYVRWTQNIFGRKPGAIRSDGGGEFCNNDLKS
FT                 FYRAEGIMPQFTTPYTPQQNGVAERKNRSITEMATCMLIDSGMDKRYWGEA
FT                 VLTATYLQNRLPSRSVPKTPYELWWGRKPDLAHLRIFGAEAFVHVPDQKRG
FT                 KLESKSRKLRFVGYSMDHKAYRFVDCETDLITVSRDARFVELRNGSSSVDM
FT                 PLKPEANEKQRATVEEERDPLKLEDEEKPAPDPEADDDEEEEPTQVEPVRR
FT                 SQRQTRGKTPRNLEEYVLDFAVGNVACASEEPVNVREALETKEWRDAMEDE
FT                 LDSHKRNQTWELVPLPKGRKVVGSRWVYKLKRDEAGNIAKHKARVVAQGFS
FT                 QKFGEDFEDVFAPVTRHATFRTLLSIASKRKMAVRHLDIKTAYLYGILEEE
FT                 VYMRQPPGYAVPGKEDYVCKLKKSIYGLRQSARCWHKRLHDVLVKLQFKQS
FT                 SADPCLYVRGCGSMKVFLLVYVDDILLASAISKELDAVTDGLKAEFEVTCL
FT                 GDVRHFLGMEVRREENVYTIRLQNYISQLLEDNGMSEAKPAKAPMDPNYVK
FT                 SEDNSALLKDISKYRSVVGSLLYLSVVARPDIANSAAVLGRKFAAPTEQDW
FT                 VAAKRVMRYLKGTNGYCLRLGGEDQALQGFSDADWAGDVASRRSTSGFAFM
FT                 FCGGTISWASRGQASVTLSSMEAEYVALSEACQEAIWLRQLLVDFGERQEQ
FT                 ATTIREDNQGCIAFVKTERVNRRSKHIDTRQKFVQELCSTGQIALEYCPTD
FT                 RMAADILTKPLGPLKHDRFRIMLGLE"
XX
SQ   Sequence 4116 BP; 1016 A; 914 C; 1277 G; 903 T; 6 other;
     ggttatggtg tcccaggaag cagtaggatt tgagaaattg cggaagaaat agkccgatcg        60
     gaagtgacgg agtatcgcga aagttcgacg gcgtttgtgt gtgttggtgc gctgctgctg       120
     ctgagtgcgg agccaccggt ggctttggtg aaaaagcttt tgttctckmc aagcgtcgcg       180
     agtgcggaat agcggtagtg tttttgccaa gatggctgat tctcgttttg cctttgccaa       240
     gttgaatggc acaaactggt caacctggaa ggtgcgcatc gagatgctgt tgcaacggga       300
     agatttgtgg actgttgtga gtgaacccgt ccckgatgaa gagggacagg acgatgagtg       360
     gaagaccgcc gatcgaaagg cgaaggccac tttggtgttg ctgattgaag ataaccagct       420
     gccgctcatc aaacattgtg ctagtgctca tgacgtgttc cgcgcgctga aatcgtacca       480
     ccaaaagacg acgcgttcgg tgcgagtttc attattgaaa aagttgtgtg cggttaacct       540
     ccccgagcgc ggtaatttgg aggaacattt gcgtgaggtg gatgaactgt tcgatcgatt       600
     agacgcggcc ggcacggagc tggacaaaga caccaaagtg tgcatgctcc tgcgaagttt       660
     gcctccctcg tttgatggca ttgtggcggc tctggatagc cgtgaagatg atgatatctc       720
     gctcgatatc gtcaaatcca aattaatgga tgaatatcat cgtcgtttgg agcgcgagtg       780
     tggtagttcc ggttcgaaat cggagaaagc aatgcggtcg gtcgacaaca aaacgaaaga       840
     gtttcgcgtg tgccacttct gtaagcgccc gggtcatctt cggcgtgatt gccggaagtt       900
     taaggcgcag aaggcagaag gtagtgggga gaaagaagct cccaaagcga aagccgcmca       960
     gagcgacgga agaaatgtgg cgtttaccgg ttcggaaagt gttcggtcgt catcatgggt      1020
     cattgacagt ggggccagcg cccatatgac caacagtcgc gagtttttcg atacgctgag      1080
     tgagttttct ggcgggtgga tcacgctcgc tgatggacag aagacgaaga tcctcggaga      1140
     aggcagtgga gtgattagtg gtgtggacgg tgccggtcag ccggtgaaga ttgacatgaa      1200
     gagtgtgaag ttcgttccag ggctttcgac aagcctgata tcagtggcca aattggcaga      1260
     aaagaacctt gcggtgagtt tcgatggcga aggctgtcgg attgctgatg caggaggaga      1320
     cgtggtggca acaggctatc gctacggagg tttgtactac cttcgaacgc tggaagtttc      1380
     caacaaggcc gtcgctggtg agcatcgtga gaattgccag caccagtggc accggcgatt      1440
     cggccatcga gactgggcag cgactgaacg actcttcaag gaaaacctag caacaggtgt      1500
     tmaggtaggt gactgtggca tgcgtcttgt ttgtgaatgt tgcctcgagg ggaaatccgc      1560
     taggcagcca tttcccccgg tgacggagcg taaatccaag cggatcctcg acatcgtgca      1620
     tactgacttg tgcgggccga tgaaaaccac gacccctagt ggaaatcggt acgttctgca      1680
     cttgatcgac gattatagcc gcttcacggt gacatatttg ttgaagcaca agtcggatgc      1740
     agcggagcac attaaggatt acgttcgatg gacgcagaat attttcggcc ggaagcctgg      1800
     agccattcgt tccgacggag ggggcgaatt ttgcaacaac gacctgaaga gcttctatcg      1860
     cgccgaaggg atcatgccgc agttcacgac gccgtacact ccccagcaga acggtgtggc      1920
     cgaacgcaag aatcggtcca ttacggagat ggctacatgt atgctaatcg attctggcat      1980
     ggataagcgt tactggggag aggcggtgtt aaccgctacc tatctccaaa accgtttgcc      2040
     ttcaagaagt gtcccgaaga ccccctatga gctatggtgg ggccgtaagc cggatctggc      2100
     tcaccttcgc atctttggtg cagaggcctt cgtccatgtt ccagatcaga agcgcggaaa      2160
     gctagaaagc aaatcgagga agctacgttt tgtgggctac tcgatggatc acaaagcata      2220
     ccgttttgtg gattgcgaga ctgacctgat caccgtcagc cgcgacgcgc gctttgtgga      2280
     actgcggaac ggtagttcgt cggtagatat gccgctgaag ccggaagcca acgagaagca      2340
     gagagcaacc gttgaggagg agagagatcc actgaagctt gaagatgagg agaagcctgc      2400
     cccggatcca gaggcagatg acgacgaaga agaagagcct actcaggtgg aaccagttcg      2460
     tcgctcgcag cgtcaaacgc gtggtaagac accgcggaac ctagaagagt acgttcttga      2520
     tttcgctgtt gggaacgtag cgtgtgcttc ggaggaacca gtcaacgttc gagaagcgct      2580
     ggagaccaag gaatggcgag atgcgatgga ggacgagctt gactcccata agcggaacca      2640
     gacatgggaa cttgtcccat tgccgaaagg aaggaaagtc gtaggttcgc ggtgggtata      2700
     caagctgaag cgtgacgagg cagggaacat tgcgaaacat aaggcaagag tcgtcgccca      2760
     aggattctct cagaaattcg gggaggattt tgaagatgtg ttcgcgccgg tgacccgaca      2820
     cgcaacgttt cgcacactgc tatcgattgc atccaagcgg aagatggcgg taaggcacct      2880
     cgacattaag acagcatatc tttacggtat cttggaagaa gaggtgtata tgcgccagcc      2940
     tcctgggtat gcagttccag gaaaagaaga ctacgtctgc aaactcaaaa agagcatcta      3000
     cggattacgc caatccgcgc gatgctggca caagcgtctt catgatgtgt tggtcaagtt      3060
     acagttcaag caatcatcgg ccgatccttg cctgtacgtg cgaggctgtg gaagtatgaa      3120
     ggtgtttctg ctcgtgtatg tcgacgacat actactggcg tcggcgatct ccaaggaact      3180
     ggatgctgtg acggacggat tgaaggcgga gtttgaagtg acatgcttgg gggatgtacg      3240
     ccatttcctc ggcatggagg ttcgtcgtga agagaacgtg tatacgattc gtttgcagaa      3300
     ctacataagt cagctgctcg aagacaacgg tatgagtgaa gcaaaaccgg caaaggcgcc      3360
     gatggacccg aactacgtga agagcgaaga taatagtgcg ttgttgaagg acatctccaa      3420
     gtacagaagt gtcgttggaa gtctcttgta cctttcggtc gtggctcggc cggacattgc      3480
     caacagtgcg gccgtccttg gaagaaagtt tgctgcaccc acggagcaag attgggtggc      3540
     ggcgaaaaga gtgatgcgtt accttaaggg gacgaacggc tattgtctac gtttgggtgg      3600
     tgaagatcaa gcattgcaag gcttttcgga cgccgactgg gccggcgacg tggcaagtcg      3660
     caggtctacc tcaggattcg ctttcatgtt ttgcggcgga acgatctcgt gggcaagtcg      3720
     tgggcaagca agcgtaaccc tttcgtctat ggaggcggaa tatgttgccc tcagcgaggc      3780
     ctgtcaggaa gcgatttggc tgaggcaact attggtggat ttcggtgagc gtcaggagca      3840
     agctactacg attcgtgaag acaaccaagg ttgtatcgcg ttcgtgaaaa cggagcgtgt      3900
     caaccgccgg tctaagcata tagacacaag acagaaattc gtgcaggagc tgtgttcgac      3960
     ggggcagatc gcactcgagt attgcccgac agatcgaatg gcagccgaca tactgaccaa      4020
     gccgctggga ccgctgaagc acgaccgctt ccgcattatg ttaggcttgg agtaacggag      4080
     ttccggagag ttcggaggct gctcatcgag gaggag                                4116
//
ID   Copia-44_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   20-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-44_AA_;
KW   Copia-44_AA-I; Copia-44_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-268
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 966-966 (2011).
XX
RN   [3]
RP   1-268
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: Elements are 99% identical to the consensus.
XX
SQ   Sequence 268 BP; 62 A; 69 C; 52 G; 85 T; 0 other;
     tgtagaggaa cgatgattac ctccggctaa gtatacggtg catccaagca ccccccgtga        60
     gtatgattac tagcgcattg ttgtaccccc aggtacgttt gacatttatg ctcattccta       120
     aaagcacatt tcccgcgtac agttgatatt cattttaact ctaattaaaa ccgttcaaag       180
     ttagctcgcg tgttttattt cccgtgacaa atccgaatct gcggcttcgc tgatctgctg       240
     tgttttccac ctgctcgtat cgtcgtca                                          268
//
ID   Copia-45_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   AAGE02023477;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-45_AA_;
KW   Copia-45_AA-I; Copia-45_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023477; Positions  190539  190739.
XX
SQ   Sequence 201 BP; 44 A; 52 C; 36 G; 69 T; 0 other;
     tgtatgaccc aaccgattcc ccttcattct atttaccttg acataacagc ccttctggca        60
     accctgtaac tgttattgat gatgaataaa tatcactact agttgaactt ccaaagcaga       120
     aaggtgtttc tcttgttcgc tgctgagaaa gccctcgggt gtgttttttc ctctgagtgt       180
     tcttcctcgt gccgctcttc a                                                 201
//
ID   Copia-46_AA-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-46_AA_;
KW   Copia-46_AA-I; Copia-46_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-238
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 967-967 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 238 BP; 56 A; 55 C; 43 G; 83 T; 1 other;
     tgatggagaa ggatgaccac ctcattatta tgtaccttgc agaagagttt gaattacctc        60
     atktattttt atgcaccttg cgtgcagttg tcatttcatt gttttaacct aacgaacatc       120
     atcacaagta aactcgattc actagagatc ggccgcgtta tttctttcag ttgtccgaaa       180
     tactttacgg tccgttttac tccggttctg cgcatctgct ggtcgttcca atccttca         238
//
ID   Copia-47_AA-I repbase;    DNA;    INV; 4123 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 24.01, Created)
DT   18-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-47_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4123
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4123
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 87-87 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..4097
FT                 /product="Copia-47_AA-I_1p"
FT                 /translation="MSDAKFQIPKLNGMNWQTWCVRVEMLLCREDLWRVIE
FT                 ENPPIEEEVGADKFAEWKVADRKARATLVLLLEDNQLPLVKGKTNAKEVFT
FT                 ALRNYHQKTSRSVRVSLLKKLCSTNLPENGDLEQHLMTIDETLDRLTAAGT
FT                 DLDKDTQICMLLRSLPPSYDSIVTALDSRADDDISLDVVKAKLMDEYHRRL
FT                 ERGDVKVKAEKAMRSTENKWNSGKESRVCHHCKKPGHLRRNCRKLLASKSG
FT                 GENSSKSEPKNEGAKAAHSDSRSVAFTAGEKCSSWVIDSGASAHMTSDKSF
FT                 FEELREFPGGWITVADGKKVQIQGEGSGLLIGVDDNNKTVRITMANVKYVP
FT                 GLSTSLISVGMLAQKQLTVCFDDTSCRVVDSAGYVVAMGGRCGNLYYLRCG
FT                 ESSLKASDGHQHLVNCQHQWHRRLGHRDWAAIERINKEQLASGVKVSDCNL
FT                 KLVCECCLEGKSARSPFPPVTDRKSSAVLDIVHTDLCGPMKHTTPSGNRYV
FT                 MHIVDDYSRFTVTYLLRNKSEAAQNLKDYVRWTANIFGRKPKVIRSDGGGE
FT                 FDNGELRRFYKEEGIKPQFTTPYTPQQNGVAERKNRSITEMATCMLLDAGL
FT                 DKRYWGEAVLTATYLQNRLPSRSVPKTPHELWWGRKPDLSHLRVFGSHAYV
FT                 HVPDVKRSKMDGKATKLVFVGYSLEHKGYRFLDPETELITISRDAKFLELG
FT                 NGTSSVEIPIAASDPGMQPAVDSEIKLIPFKEEDEELPASETSGVNDSFES
FT                 ANQEVEPAEDVRRSHRETRGKAPRRFDDYVLDYDVGIAACAMEEPSTFQEA
FT                 VESPQWRRAMNDEMESHKQCGTWELVPLPPARKPVGSKWVFRLKRNEHGEV
FT                 VKHKARIVAQGFSQRPGVDFEQTFAPVTCHATLRTFLTVAAKRGLTVQHFD
FT                 VKTAYLYGSLEEEVFMKQPVGYEAKGKEEMVCRLKRSIYGLRQSARCWHRK
FT                 LNEILMKYGFKPADSDPCLYIKQTATTMVYLLVYVDDLLIGSSEEAEIAKL
FT                 FQSLQKEFQMTSLGEVHHFLGLEVSRDGDRYKLRLGTYIDNLIKKFGMVDA
FT                 KPARSPMDVGYLKAEDTSQPMDDVTKYRSLVGALLYLGVVARPDIVASTTI
FT                 LGRKFCSPTETDWSAAKRILRYLKGTRDFVVQLGGDQQQDLIGYSDSDWAG
FT                 DTGTRRSTSGYVFLFAGGVISWASRRQSSVTLSTMEAEYVALSEACQEAIW
FT                 LRQLLREFGEGQAKPTTIMEDNQSCLTFVKSERQSRRSKHIDTKQRFVYEL
FT                 CVTKEINLEYCPTEEMLADVFTKPLGPLKHKRCCELLGLVGNQ"
XX
SQ   Sequence 4123 BP; 1060 A; 961 C; 1223 G; 878 T; 1 other;
     ggttatggtc ccggctgtgg aacggagtag aaagtgcgaa aagtgtttcc ggccaagaga        60
     gccaagagtt gcgtaagcca gtgatttccg ctccatgtga acattttgct gttggagcga       120
     agacaagtga accgcgaaag agcgaataaa ttttgtgtga aaagtggacg ctaaaataat       180
     aaacaatgag tgatgccaag ttccagatcc caaaattgaa tgggatgaac tggcaaacgt       240
     ggtgtgtgcg ggtggaaatg ctgctttgcc gtgaggacct gtggcgagtc atcgaggaaa       300
     accctccgat tgaagaagaa gttggtgccg ataaattcgc cgagtggaaa gttgccgatc       360
     ggaaagcgcg agctacgctg gtgctgttgt tggaggataa ccagctgccg ctggtgaaag       420
     gcaaaacgaa tgccaaggaa gtttttaccg cactccgaaa ctaccaccag aaaacatccc       480
     gctcggtccg tgtgagtttg ctgaagaagc tttgttcgac caatctcccg gagaatggtg       540
     accttgagca gcatttgatg acgattgacg aaactctcga tcgtctcacc gctgctggaa       600
     cggacctgga caaggacacg caaatatgta tgctgctccg cagcctgcct ccctcgtacg       660
     acagtatcgt tacggcgctc gattcacgag cggatgacga catttccctg gacgtggtta       720
     aggcaaagct gatggacgaa taccatcgtc gccttgagcg tggggatgtt aaggtgaaag       780
     ctgagaaggc aatgcgatcg acggaaaata aatggaacag cggtaaggag tctcgagtgt       840
     gccaccactg caagaagccc ggccatctcc gccggaactg taggaagctg cttgcctcca       900
     agtcgggagg cgaaaatagt tctaaaagtg aaccgaagaa cgaaggggcc aaagccgccc       960
     acagtgacag ccgcagtgtg gcattcactg ccggtgaaaa gtgttcgtcg tgggtgatcg      1020
     acagtggggc aagtgcccac atgaccagcg acaagtcgtt tttcgaggag ctgcgggaat      1080
     ttcctggcgg ctggattaca gtggccgatg gcaagaaggt gcaaatccaa ggagaaggaa      1140
     gcggattgct gatcggcgtt gatgacaaca acaaaacggt gcgtattacc atggcgaatg      1200
     tcaagtacgt gcctgggcta tctactagct tgatttccgt cggcatgctg gcgcaaaagc      1260
     agctgacggt gtgtttcgac gatacgagtt gccgagtggt cgattctgct ggctacgttg      1320
     ttgctatggg tggtcgttgt ggcaacctgt actacctacg gtgcggcgaa tcttcgttga      1380
     aggccagcga cggtcatcag catctggtga actgccaaca ccagtggcat cgccggttgg      1440
     gccaccgcga ttgggcggcc atcgagcgaa tcaacaaaga gcaactagcg agtggcgtaa      1500
     aggtgagtga ttgcaatcta aaattagtat gtgagtgctg cttggagggc aaatctgccc      1560
     gtagtccctt tcctccggtg acagaccgga aatcatctgc cgtcttggat atcgtgcaca      1620
     cagacttgtg tggcccgatg aagcacacga cgccgagcgg taatcggtac gtgatgcata      1680
     tcgtggacga ctacagcaga tttaccgtta cgtatctgct acgaaacaag agcgaagctg      1740
     cacagaacct gaaggattat gttcgctgga ccgcgaacat ttttggccgc aaaccgaagg      1800
     tgatccgttc ggatggtggt ggtgaattcg acaacggaga gcttcgtcga ttctacaaag      1860
     aagaaggcat caaaccgcaa ttcaccacac cgtacacgcc gcagcagaat ggagtggccg      1920
     aacgaaagaa ccgttccatc actgaaatgg ctacgtgtat gttgctggac gccggactcg      1980
     acaagcgtta ttggggcgaa gcggtgttga cagcgacgta cctgcagaac cgtctgccct      2040
     cccgatctgt ccctaagact ccgcacgagc tttggtgggg ccgcaaaccg gacttgagtc      2100
     atctgcgggt cttcggttcg cacgcctacg tgcatgttcc cgatgtcaag cgtagtaaga      2160
     tggacggaaa agcaacgaag ctagttttcg tcggatattc gctcgagcac aaaggttacc      2220
     gttttctcga tccggaaacg gagttaatca cgataagcag ggacgcaaag tttttggagc      2280
     tcggaaacgg cacgtcttcc gtcgagattc cgatagctgc gtcagatcct ggtatgcagc      2340
     cggcagtgga cagcgagata aagctgatac cctttaagga ggaggatgaa gagcttccgg      2400
     cgagtgaaac atcaggtgtt aacgattcat tcgagtctgc aaatcaagag gtcgagcctg      2460
     cggaggacgt tcgacgatcc catcgggaaa cgcgcggtaa ggctccgcga cgtttcgatg      2520
     actacgtact ggactacgac gttggaatag ctgcttgcgc catggaagag ccatcaactt      2580
     tccaagaagc cgtcgagagc ccgcaatggc gtcgggcaat gaatgatgaa atggaatcgc      2640
     acaagcaatg cggtacctgg gaactcgtgc cgttgccgcc tgcacgaaag ccagtaggtt      2700
     cgaagtgggt ktttcgtctg aagcggaacg agcacggtga agtggtgaag cataaggctc      2760
     gaatagtagc acaggggttc tcccaacgcc ctggcgttga cttcgagcaa acgtttgcac      2820
     cggttacgtg tcatgctacc ctgcgtacgt ttttgactgt agcggccaag agaggtttga      2880
     ccgttcagca tttcgacgtt aaaaccgctt acctctacgg atcgctagaa gaggaggtgt      2940
     tcatgaaaca gcctgttgga tacgaagcta agggaaagga ggagatggtg tgtcggctta      3000
     aacgtagtat atacggcctt cgccagtcgg caaggtgctg gcaccgaaaa ttgaacgaga      3060
     tcctgatgaa gtacggattc aaaccagctg attctgatcc gtgcctctac atcaagcaaa      3120
     cagcaacgac tatggtttac ctgttggtct atgttgatga cctgctcatc ggatcgtcgg      3180
     aagaggctga gattgcgaag cttttccaga gtttgcagaa ggagttccag atgacaagct      3240
     tgggtgaagt gcaccatttc cttggcctgg aagtgagtcg cgatggtgat cgatacaagc      3300
     tacgtttggg aacctacatc gacaacctga tcaagaagtt cggcatggtg gatgcgaagc      3360
     cagctagatc cccaatggac gttggctacc tgaaggccga agatacaagc caacccatgg      3420
     acgacgtgac gaaataccgg agcctagtag gagcgcttct ctacttaggc gttgtggcta      3480
     gaccggatat cgttgcaagc acaacgattt tggggcggaa attctgttcg cccactgaga      3540
     ctgactggag tgcagcaaag cggatactgc gctacctgaa gggtacccga gacttcgtgg      3600
     tacaactagg aggagatcag cagcaggact tgatcggtta ctccgactcc gattgggcag      3660
     gagataccgg tacgagaaga tcgacttcgg ggtacgtatt cctgttcgcc ggcggcgtca      3720
     tttcttgggc cagccgaaga caatccagcg ttacactttc gaccatggag gccgaatacg      3780
     tggcgctcag cgaggcctgt caagaagcca tctggctgag gcagctgctt cgagagttcg      3840
     gcgaaggaca agcgaagcct acaacgataa tggaggacaa ccagtcctgt ctaaccttcg      3900
     tgaagagtga gaggcagagt cgtcggtcca agcacatcga cacgaagcag cggttcgttt      3960
     acgagctgtg cgtcacgaag gagataaatc ttgaatactg cccgactgaa gagatgctag      4020
     cggacgtctt cacaaagccg ttgggtccgc tgaaacacaa gaggtgttgt gagctgctgg      4080
     gattggtagg taaccagtga agcagttcca cattgaggag gag                        4123
//
ID   Copia-47_AA-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   19-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-47_AA_;
KW   Copia-47_AA-I; Copia-47_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-293
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 968-968 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 293 BP; 59 A; 82 C; 56 G; 91 T; 5 other;
     tattggaggt gcactgttkc actgctacac atcmgcacgc ccctcggtgt gcmcaactgs        60
     agagtgcaac tccatgcgac tgcagaatcc atctctgcta maccggcaac agcagcaaat       120
     gttggcggtt attttccact actgtttttc tcatcgacgc gtccaaacgt gttttcattt       180
     cgctattaaa taaaagttgt tcaaaagtat ttctcgcgag tttatctttt cgtgcttcct       240
     atcccgattc ccgtacgctg ttctctgctg ccgtttgtcc acctgcgcca tca              293
//
ID   Copia-48_AA-I repbase;    DNA;    INV; 3921 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 24.08, Created)
DT   01-MAY-2019 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-48_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3921
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3921
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3921 BP; 1140 A; 758 C; 1114 G; 909 T; 0 other;
     gttatgtgcc cagtaacaaa gtgaaaagtg tgtgctacct gatgagcaat taagatggag        60
     cggctacgaa ttctgaagct caataatcag aactatggca gctggaaatt caccgtcgag       120
     ctactgctgg tgagagaaga cctgtggaaa tttgtgagcc cagggatttc accggaggaa       180
     acagctgcgg cgggggtaaa tgctgcggaa gttgctgcat ggcgagctgg agaccagaga       240
     gcaagagcga ccatcggatt gttggtggag gaaacccaac atgcgctcat ccggaacact       300
     acgacggcgt gggagagttt gcagagacac catgaaaaag tgacactgtc ggcgaaagta       360
     ggcattttct atcgtctttg cgacatgcgc tacaccgacg gggaaaacat tgagcagcat       420
     ttgtacgaga tggagcagtt gttcgagcaa ttgtcgaaag ctgggacgaa tctcggcaga       480
     gagctggaag tgatgatggt attacgcagc cttccgaaat ccttcagtac cctcacgacg       540
     gctttggact gccgtaaaga agaagaaatc acactggagt tggtgaaaca aaaagtgttg       600
     gatgaagtga tgaaacgcaa aggggacgaa aaaagtgaga aagctttgag agtgaaagaa       660
     aaagcttcgc ataagaaaag tgttgtttgc cacaactgtc agagagtcgg acataagaaa       720
     aaggactgtc gagtgaaacc gaaaccgagt gaagtgagtc gggacgaatc taaagcttcg       780
     agaagtgcgc aggccaaagt ggcatcatac acgaaagaaa atgacgatac gttcgcgttc       840
     gcggtcggtg gtgattcgat tagtgaatgg acgattgatt ctggttcatc gtggcacatt       900
     tgtgcaaacc gcgaatattt tgacactgtt gtgaaaagaa gcttggaaac cccgagtatg       960
     gtgattgtgg ctgatggtcg gaagtgtctg gtggaaggcg aaggaacgtg tcgaatttcc      1020
     tgtttggttc aaggtcaagg agcgaagcag gtggtactat ccagagtact gtacgttccg      1080
     gaaatgaatg ccaacctgat atcagttggc tgtttggtca agaaaggagc tgaggtgagt      1140
     ttttctgcat ctggttgtac tatttcttgc ggtggccgaa cagcaggcga agcggtactt      1200
     gaaggcggct tgtatttgtt gaagatagta aaaacgccta tggtatcggt cgctaaaagc      1260
     cacaatccat tgtgtatcca cgagtggcat cgaagattgg gacatcggga cccggaggcc      1320
     attttggaac tggagagaag cggattagct agtggttttc gcattcagcc gtgtggtatc      1380
     cgagcggtat gcgagtgttg cttaaaagga aagatggcaa ggcttccatt tccgaaacac      1440
     gccgatcaga aatcgaccgc aatattggat ctcatccaca gtgacgtatg tggccccatg      1500
     aatactccca catcgggagg atgccgttac tttgtaacat ttatcgacga ctttagtcga      1560
     tacagctgga tcattttcct tcgtaagaaa tccgaggtcg aagaatgctt caagcgtttc      1620
     gtaaggatgg ccaaaacgca gttcggaaag acacccaagg tacttcgatc cgatcagggt      1680
     ggggagtaca ggtctaaatc attcgaaaaa ttttgcgctc aggaaggtat actgcagcag      1740
     tacaccactg cttatacacc ccaacaaaat ggtgtttcag agcgcaaaaa cagatcactg      1800
     gtagagatgg gaagatgtat gctcctggaa gccaacatgg gctactgtta ttgggcggaa      1860
     gctgtgaata ccgccaatca tctgcagaac atgcttccaa cacgggtgag agataagacg      1920
     ccgtatgaaa tcgttttcaa ggaaaagccg gatttggaac atcttcatgt gttcggttcg      1980
     caagcgtgcg tgtttgtgcc atcggagaag cgcactaaat tggaaccgaa agctgtccgg      2040
     atgactttta ttggatattc gtcgcagcac aaaggctatc tcagctggag atttttcgtc      2100
     caaccgaacc aacatcgaag gaatcgattg tggagttccc gatgacagcg aagccagatg      2160
     tacctgaaaa agatcgagga gaaggaagtg ttgtgagtga atacgaagat gcagatgaag      2220
     aagattttga aggtttttcg gcaagttcta ttttccacgg agaggaacag gaggagctgg      2280
     aattgccgcc aaatgatgaa gttcgcagat cgcagcgaag caatattgga gttccacctc      2340
     agcgttatca ggtaagcggt ccagtgaaag aattgtctga tgaaccgcgc acctaccagg      2400
     aagctgttaa tggacctgaa agtgaaaaat ggaagcaagc gatttgtgat gaactcaagg      2460
     cgcaacgtga aaaccagacc tggaaagaag ccgaactacc atctggaagg aaaatcgtag      2520
     gatgtcgatg ggtgttcaag cggaagtacg atgaggacgg gaatgttatt caatacaagg      2580
     cccgcctcgt cgcgcaaggt ttcaaccaag tgtacggcgt ggatttcgat gaaatttttg      2640
     cacccgttgc gaaacaagtg acctttcgca tattactcac catcgctgct agaagaggaa      2700
     tgttggtaaa gcatattgat gtcaaaacgg catatctcaa tgctgacttg gatgaagaaa      2760
     tttttatgcg agtgcccccc ggagtgacac cgacgaagag aaattcagtg ttgctgatga      2820
     agaaaagcat ctatggtcta cgacagtcgg ctaggatgtg gaaccagaag atagacagcg      2880
     ttctacgtcg aatgggattc aagccttcta gtgcagaccc ttgtttgtac gtgcgtcatc      2940
     gaggtaagaa atcggcattt atcctgttgt atgtcgatga catgttggtc gcgagttcga      3000
     gtcaacagga gtatgaagag attttcaaga gcctgcaagc tgaatttgat cttactcaac      3060
     tgggagatgt gcaacatttt gtcgggatac aggtagagaa gcaaggtaag cactactact      3120
     tgaggtagaa ggcatacatt cggaaattag cagatcagtt cggtatgaag gaagcaaaag      3180
     cgtcaaaaat tccgattgac acaggctacg tacagcaaaa ggaggagagc gagaggctac      3240
     ctaccaatga aaattttcaa agtcttattg gaggtttgct ttatcttgct gtgcacactc      3300
     ggccggacat tgctataagc acgacgatac taggtaggaa ggtgagtcat tctactgctg      3360
     ccgattgggt agaggcaaaa cgagtgcttc gttacctgat tggtacctgt gacttgaaac      3420
     tgtgcatcgg aggtgatggc gaactcgaag gctttgcgga tgctgactgg gccgggaacg      3480
     ttcatgaccg gaaatccaac tctggttaca tgttccgact cggtgatgga accatctctt      3540
     agactgcaag gaaacagaca tgtgttgcgc tatctagtac agaagcggaa tatatttcgt      3600
     tgtcggagtg cagtcaggac ctgcagtgga ttttgaagct catggaagat ttcggggaag      3660
     acgttaagca gcctgtgaag atcaacgaag ataatcagag ctgcattaag ctgctgaagc      3720
     aagacggagg gaccaagcga tcgaagcatg ttgacacgcg ataccatttc gtgcgtgaca      3780
     tggcagagca gaagaggatc aacgtcgtct attgtccttc aggcgatatg ctggcggatg      3840
     cgctgacgaa accgttggcg agagtaaaac tggaggaact acgagagaag attggtctgc      3900
     gaatgactcg ttgaggagga g                                                3921
//
ID   Copia-48_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-48_AA_;
KW   Copia-48_AA-I; Copia-48_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 969-969 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 201 BP; 71 A; 38 C; 37 G; 55 T; 0 other;
     tgaaggcata aaatacgttc agtgtggcaa cacgtcatcg cagtgtgaca accatgcagg        60
     atggcaactg tcaagaacaa aaaacatcag tgaatatatc gcgccaaaat aactctccaa       120
     ttcataatgt tcgagtgtag agaataaaac tttttcatta gttgattgac tgtacaacag       180
     tacacatcgt gttttatttc a                                                 201
//
ID   Copia-49_AA-I repbase;    DNA;    INV; 4158 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.01, Created)
DT   12-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-49_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4158
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4158
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 88-88 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..4148
FT                 /product="Copia-49_AA-I_1p"
FT                 /translation="MEREGDLARVPLFDGSNYPAWKFRMLALLDEHELMDC
FT                 IEQEVAEVEELEIKQEDTAEERQQKTKAVEKRKKKDKRCRSLLISRIHDSQ
FT                 LEYIHDKPTPKAIWLALQRIFERRSIASRLHLKKQLITLRQDGASLQEHFL
FT                 RFDRIVREYKSTGAGIDDLDIVCHLLLTLDSTYATVVTAIETMPEDALTLE
FT                 FVKCRLLDEETKRKSADVESLSTKPDAAAFSGSRGRNSSKQQQKKKVWKCF
FT                 GCGQEGHRVAECPEKKKKNDSKKTSAHYGAGGKGVCFVTAETIPNKKKNVV
FT                 TWIIDSGSSEHIANDSELFDELIPLQKPMKIAVAKQGQSIVAKHRGVIRLC
FT                 SVVNGESIPITLRDVLYIPEASVNLLSVRKIEMNGLRIVFASGAVSIAQES
FT                 GVVAIGKRRGKLYELSLHREEECGEKSSLYSCGRVPKELELWHRRYGHLSA
FT                 KNLETLVRDKMVVGLDAELGTKDSDEIVCESCIAGKQTRMPFSAREGRRSS
FT                 RVLELIHSDVCGPVSPVGIDGETYFVTFIDDWSRFTVVYLMNSKDQVTSKF
FT                 KEYEAYVSAKFGNKISRFRCDNGGEYRAGAFRKFCKKMGIQIEWTVPYTPE
FT                 QNGVSERMNRTLVEKVRSMLEDSGIDKKFWGPAIQTAAFLSNRSPASALDS
FT                 KKTPFEVWEGRKPDVHKLRAFGVDVYVHIPKEHRKKLDSKSWRGVFIGYSH
FT                 NGYRVWDPRRKTVAVVRDVIFVESGRSDVPLDRESAASQDYVRVPGIPEEA
FT                 DDDNEVAVEDVMDEENFDSCVEETIREDGGESTTENDQEEWRGQRRRSQNS
FT                 RRAESTPKSTPRPRRERQPPTWQRDFEMDYTGFALSATSFVENLPSSLSEM
FT                 KKRADWPKWEVAVREEMEALEKNNTWSLTKIPEGRVPITCKWVFRLKRDED
FT                 GGKIRYKARLVARGFTQRYGFDYAETYSPVAKLDTLRTVLAVANHEKMAVH
FT                 QMDVKTAFLNGKISEEIYMVQPEGFEKGKGLVCRLNRSLYGLKQASRAWNE
FT                 RFHVFVEKLGFNRGASDQCLYVKRTKNGPLFLIIYVDDILIIGSQLKVIET
FT                 VKRSLASEFEMKDLGEVKSFLGMKIERVVDERYLRISQRTFLEDLLRRFNM
FT                 QECKPISTPIECRLRLSKGEESQRTEKPYRELIGCLMYVALTSRPDLFAAV
FT                 NYFSQFQSCPTEEHWVHLKRVLRYIRGTLDLGLEFRGSNEAPVMEAFCDAD
FT                 WANDPIDRRSLTGYVFRVHGCTVGWLTRKQSTVSLSSTEAELVALSVTVCH
FT                 GIWMKRLLQDLGKELEGPVTYYEDNQSTIRIAEDERDAGRMKHVDVKHRFV
FT                 RELIQQGQVALRYKSTNDQLADVMTKGLPAGVFQKHRASLGLMASGN"
XX
SQ   Sequence 4158 BP; 1094 A; 897 C; 1272 G; 895 T; 0 other;
     ggttatgggt tccagtattc gcgagtgtcg gaaattcggt cggaagtaaa agttttgcac        60
     ggtacggaat catggaacga gagggcgatc ttgcgcgtgt gccacttttt gatggctcaa       120
     actacccggc atggaagttt cgaatgctgg ccttgctcga cgagcacgag ctgatggact       180
     gtatcgaaca ggaggtggcg gaagtagagg agcttgagat caagcaggag gacacggctg       240
     aggaacgcca gcagaagacg aaagcggtgg agaaaaggaa aaagaaggac aaacgatgcc       300
     gatcgttgtt gatttcccgc atccacgaca gtcaactcga gtacatccac gacaaaccga       360
     ccccaaaagc gatttggcta gcgctgcagc ggattttcga gcgacggagc attgctagtc       420
     gcttgcatct gaagaagcag ctgattactc ttcggcagga cggcgccagc ctgcaagagc       480
     acttcctccg gttcgaccgg atcgttcggg aatacaaatc caccggtgct ggtattgatg       540
     atctcgatat cgtctgtcat ctgctgttga cgctggattc aacttacgcg acggttgtga       600
     cagccatcga gacgatgccg gaagatgcat taacgctgga gttcgtgaag tgtcgattac       660
     tggacgaaga aacgaagcgg aagagtgcag atgtcgaatc cctttcgacg aagccagatg       720
     cagcagcttt ctctggatcg cgaggccgaa actcatcgaa gcagcagcag aagaagaaag       780
     tgtggaagtg ttttggctgc ggccaagagg gacacagagt cgctgagtgt ccagagaaga       840
     aaaagaagaa cgactcgaag aagacgagtg cgcactacgg tgcaggcgga aaaggtgtgt       900
     gtttcgtcac ggcggaaacg attccgaata agaagaaaaa cgtagtgacg tggattatcg       960
     attccggctc atcggagcat atcgcgaatg atagtgagct tttcgatgag ttgataccgt      1020
     tgcagaagcc gatgaaaatc gctgtcgcca aacagggaca gtcgatcgtc gcgaaacatc      1080
     gcggcgtgat tcgtttgtgt tcggttgtaa acggtgaatc gattccgata acattgcggg      1140
     acgtacttta cattccggaa gcaagtgtca atctcttgtc ggtgcgtaaa attgaaatga      1200
     acggactgag aatagtgttc gctagtggcg cagtcagcat cgcacaagaa tcgggtgtag      1260
     tggcgattgg gaaacgacgt ggaaaactgt acgaactgag cctccaccga gaagaggagt      1320
     gtggggaaaa atcgtcgctc tactcgtgcg gtcgcgtacc caaagagctg gaactgtggc      1380
     accgtcggta cggccacttg agtgcgaaaa atttagaaac tttagtgcga gataagatgg      1440
     ttgttggact tgatgccgaa cttggtacga aagacagtga cgaaatagtt tgtgagtcat      1500
     gcatcgccgg gaagcagact cgaatgccct tctccgcgcg cgagggtaga cggtcgtcgc      1560
     gagttttgga actaatccac tcggacgtgt gcggccctgt atcgcctgtg gggatcgacg      1620
     gtgagaccta cttcgtcacg tttatcgacg attggagtcg gttcacggta gtgtatctga      1680
     tgaattccaa ggaccaggtc accagcaagt tcaaggagta cgaagcctac gtgtcggcga      1740
     agttcggaaa caagatctcg cgattccgct gtgacaacgg cggtgaatac agagctggcg      1800
     cattccggaa gttctgcaag aagatgggaa ttcagattga atggaccgtc ccttacactc      1860
     cggaacagaa cggcgtcagc gaacggatga ataggacgct agtcgagaag gtgcgttcca      1920
     tgctggagga ttccggaatt gacaagaagt tctggggtcc ggcgatccag actgcggcgt      1980
     ttttgtcaaa ccgcagtcca gcgagtgctc tcgacagcaa gaaaaccccg ttcgaagtat      2040
     gggaaggacg taagccagat gtgcacaagc tgcgagcgtt cggagtggat gtttatgtgc      2100
     acattccaaa ggaacaccgg aagaagctgg attcgaaatc atggcgaggg gtgtttattg      2160
     gttattccca taatggctac cgcgtatggg atccaaggcg gaagaccgtt gcagtcgtgc      2220
     gtgacgtgat tttcgtcgaa agtggtagaa gcgatgttcc cttggatcgg gagagtgcag      2280
     caagtcaaga ctacgttcgt gtgccgggaa taccggaaga agctgacgac gacaacgaag      2340
     tagctgtgga agatgtcatg gatgaagaaa attttgatag ctgtgtagag gaaaccattc      2400
     gagaagatgg aggagaaagc acaacggaaa atgatcagga ggaatggcga ggacaacgtc      2460
     gtcgaagcca gaactcacgg cgtgcggaaa gcactccgaa aagtacgccc cgtccgcggc      2520
     gagaacgtca gcctccaacg tggcaacggg acttcgagat ggattacacc ggatttgctc      2580
     tcagtgctac cagcttcgtg gagaatcttc cgagttcgct gtcggaaatg aagaagcgag      2640
     ctgattggcc gaagtgggaa gtagctgttc gggaagaaat ggaagccttg gagaaaaaca      2700
     acacctggtc gttgacaaag attccagaag gtcgtgtgcc gattacctgc aagtgggtgt      2760
     tccggctgaa gcgggatgaa gacggcggca agattcgcta caaggccagg ctcgtagccc      2820
     gcggattcac tcaaaggtat ggattcgatt atgcggagac ttactcccca gttgcgaagt      2880
     tagacacact tcggacggtc ttagcggttg ccaaccacga gaagatggcg gtccatcaga      2940
     tggacgtaaa aaccgccttc ttaaacggaa agatttcgga ggagatatat atggtccagc      3000
     cagaaggatt cgagaaaggt aagggtctgg tgtgccgctt aaaccgttca ctgtacggcc      3060
     tgaaacaggc gtcgagggcc tggaacgagc ggttccacgt tttcgtcgag aagcttgggt      3120
     tcaatagagg agcaagtgat cagtgccttt acgtgaagcg aaccaaaaac ggtccactgt      3180
     ttctgattat ctatgtggac gatattttga ttatcggttc acaattgaag gtgatcgaga      3240
     cggtgaagag atccctggcc agtgaatttg agatgaagga cctgggggag gtgaagagct      3300
     ttcttggcat gaaaattgag cgcgttgtcg atgagaggta cctgcggatt agccagcgca      3360
     cttttctgga agacctgtta cggcggttca atatgcagga gtgcaagccg atttccacac      3420
     caatcgaatg tcgtttgcgg ttgtcgaaag gagaagagtc ccaacgaacg gagaagccgt      3480
     atcgcgagtt gattgggtgc cttatgtacg tcgccctgac atcgcggccc gatctgtttg      3540
     cggctgtcaa ctattttagt caattccaga gctgcccaac ggaagagcac tgggtgcact      3600
     tgaagcgagt gttgcggtat atccgtggca cgttggacct aggactggaa tttcgaggaa      3660
     gcaacgaggc accggttatg gaagcatttt gtgatgccga ctgggcaaat gatccgatag      3720
     accggcgatc actcaccgga tatgtgttcc gggttcatgg atgcacggtt ggttggctta      3780
     ccaggaagca atcgactgtg tccttgtcat cgaccgaggc cgagctggtt gcacttagcg      3840
     tgaccgtgtg ccacggtatc tggatgaagc gactgttgca ggatttgggc aaagagctcg      3900
     aaggacctgt gacttactac gaagacaatc agtcaaccat caggatagca gaggacgaga      3960
     gggatgctgg tcgtatgaag catgtcgacg tgaagcaccg tttcgtgcga gagctgattc      4020
     agcaaggaca agttgcccta cgctacaagt ctaccaatga tcaactcgct gatgtcatga      4080
     ccaagggatt gccagcagga gtgttccaga aacatcgggc cagccttgga ttgatggcct      4140
     ccgggaattg agcggggg                                                    4158
//
ID   Copia-49_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   12-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-49_AA_;
KW   Copia-49_AA-I; Copia-49_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 970-970 (2011).
XX
RN   [3]
RP   1-209
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: update the consensus and the ends.
XX
SQ   Sequence 209 BP; 61 A; 49 C; 35 G; 64 T; 0 other;
     tattgagatg gacaatcccg tagtcctacg tcattcgacc taagcggcga aaccccttcg        60
     cgcgcatttt cgtcgtcagt agcaacaaca acaacattag ttgaaaaacg tttctgtgag       120
     aaacacgcga tttaataaaa gttaattttc tttcgctttg taacaacgtt tgttacttct       180
     atttcgaaga tcgaaccatt ccctcatta                                         209
//
ID   Copia-4_AA-I repbase;    DNA;    INV; 4139 BP.
XX
AC   supercont1.10;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_AA_;
KW   Copia-4_AA-LTR; Copia-4_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4139
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.10; Positions 4195183 4191045.
XX
CC   Positions [1772-2188] - Integrase core
CC   'TGGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1821
FT                 /product="Copia-4_AA-I_1p"
FT                 /translation="MEDDRAPRVYLFAGKNYSTWSFRMQAYLEELGLLHCI
FT                 EKPLEEEDFYPENPADTAAVEQAKEEKRKKRKQEDAKCKSVLIHKIADSQL
FT                 EYVRGKTSPKAIWSVLQQTFEQKGVSGVFFLLKQLTGMKYCDSRSMEEHIL
FT                 SFEKIVRELESAGIKFDEPVVVFFLLQSMPKSYEQLITVLETLPVQQCSME
FT                 FVKSRLLSEDVKRQFSGSAKSLDPGTAFVGKGRKFPFKCHACGKPGHRRVD
FT                 CPENKYSERASDDRKFDRKQMKKKNKSGAHSAETEHDDIAFIVSVGDALHS
FT                 SGSEFRWVLDSGASEHMVNDRSCLVNVRKLEVPTVINVAKSGVSLVSRVVG
FT                 DVKMSATVNGKKLSCTVYDVLFVPGLYTNLFSVKRVAERGMEVIFGKDSAR
FT                 IVRNGKVVCTANRNGRLYELNVNVVKESTAMIGETESQLSLWHRRFGHIGK
FT                 SGLLKMVRNDMVEGIEGSVSAATNAKVCEPCMMGKQAKLPFEECVKARSSR
FT                 PLELVHTDVCGPFKPESWNGKKIFVTFIDDFTHFTDSIRAES"
FT   CDS           1862..3874
FT                 /product="Copia-4_AA-I_2p"
FT                 /translation="MATSHFERKIARLRSDNGSEYMNEELITYCNESGIIM
FT                 EPSVPYTPQQNGVAERMNRTIIERARAMLDESGINRMMWSEAVQAAVHVIN
FT                 RSPTNALTVTKTPYEMWYGRKPDVSRLRVFGSKVFCHAPKEKRSKLDVKSR
FT                 VCYLIGYGCNGYRVWEPNQRKVIVCRDVVIEELPVKRSKHPEVYTNDHLVS
FT                 DRLQEPETSDLKSAEIVTGRKEVSVDEQDSSEEDGEDYEDAEDGNTPLRRS
FT                 QRQRKLPERLADYEVCVAFALNAENYVEELPETVEELRKREDWPEWDAAIK
FT                 DELKSLEKNRTWDLVDLPAGKRAISSKWVFKIKYTANGDVDRYKARLVAKG
FT                 CSQRQGFDYQETYAPVVRISTVRTLLAVAVQKNLHVHQMDVRTAFLNGSLS
FT                 ETVYMRLPTGFERGKKVCKLNKSLYGLKQAPRSWNERFNKFMVHLGFKRSE
FT                 HDSCLYVRNKNGIVSYLILYVDDIILASSSLDELVKIKRSLTQEFEMDDMK
FT                 ELNHFLGLKIERNMEEGTLIINQSQYIRALLKRFSMQDCKPVSTPLEVNLK
FT                 LTTNESEPVTKHPYRELVGCLTYLMLSSRPDISSAVNFLSRFQSGATDTHW
FT                 THLKRVLRYLQGTKDDSLVYRRNRNSEPLAGFADADWGSDVNDRKSTSGSL
FT                 FQKQSTLRSVRRHAMLYGSETF"
XX
SQ   Sequence 4139 BP; 1187 A; 806 C; 1159 G; 987 T; 0 other;
     ggttatgggc ccagaacacg tgttgttttt cacattagtt ttccagttct aaattcgcgg        60
     aatttgtgaa ttcgatgagc ggaaagtagc gtgaaagttg aaagtagttt ccgtcgggag       120
     tgaacacgaa aatttcgtcg gaaagttatc cgaaaagccg ccggtagtgt ttgccagcat       180
     cgtcgtcatt ttcttcgttt tgacaaaatg gaggacgatc gcgcgccgcg ggtgtatttg       240
     tttgctggga aaaattactc aacgtggagc ttccgaatgc aggcatacct ggaagagttg       300
     ggtctgctgc attgtataga gaagccgttg gaggaagaag atttttaccc ggaaaaccca       360
     gcggatacag cggcagtgga acaggcgaaa gaagaaaaac ggaagaagcg aaagcaagaa       420
     gatgctaagt gcaaatcagt tttaattcat aaaatagccg actcgcaact cgagtatgtg       480
     cgagggaaaa cgtcgccaaa ggcgatttgg tcggtgctgc aacaaacgtt cgaacaaaaa       540
     ggtgtttcgg gagtgttttt cttgttgaag cagttaaccg gcatgaagta ctgtgactct       600
     cgttcaatgg aagaacacat cctctcgttt gagaaaattg tgcgcgaact ggaatcggct       660
     ggaattaagt ttgacgaacc ggtagtggtg tttttcttgt tgcaatcaat gccgaagtca       720
     tacgaacagt tgattaccgt actggaaacg cttccggtgc agcagtgctc gatggaattc       780
     gtaaaatcga ggctgctcag tgaagatgta aagcgccagt ttagtggaag tgcaaaatcg       840
     ttggatccgg gaacggcatt tgtcggaaaa ggaagaaagt ttcctttcaa gtgccatgcc       900
     tgcgggaagc cggggcatag aagagtggac tgccctgaga ataagtattc ggaacgtgca       960
     agtgacgatc ggaaatttga tcggaagcaa atgaagaaga agaacaagtc gggagcccac      1020
     agcgccgaaa ctgaacacga tgacattgct ttcattgtga gcgtggggga tgcgttgcac      1080
     agtagtggta gtgagtttcg gtgggtgctc gacagcggtg cttctgaaca catggtgaat      1140
     gacagaagct gtcttgttaa tgtgcgaaaa ctggaagtgc cgacggtgat caatgttgcg      1200
     aagtcaggtg tgtcactggt tagccgcgtg gttggtgacg tcaagatgag tgcaacagtg      1260
     aatgggaaga agttgagctg cactgtgtac gatgttttgt tcgtacctgg tttgtatacg      1320
     aacctgtttt ccgtaaaacg agttgcggag cgtggtatgg aggttatttt tggaaaggac      1380
     agtgcgcgga tcgtgcgaaa tggaaaagtc gtgtgtaccg caaatcgaaa tggtcgatta      1440
     tacgaactaa atgtgaatgt ggtgaaggag tctactgcca tgattggtga aacggaaagc      1500
     cagttgtcat tatggcatag aagattcgga catatcggaa agtctggttt gttgaaaatg      1560
     gtccgaaacg atatggtcga aggaattgag ggaagcgtga gtgctgcaac caatgcaaaa      1620
     gtgtgtgaac catgcatgat gggcaagcaa gcgaagctcc ccttcgaaga gtgtgtgaaa      1680
     gctcggtcgt cgcgtccgct ggaattagtg cacacggacg tgtgtggacc gttcaagccg      1740
     gaatcatgga acggtaagaa gatttttgtg acttttattg acgatttcac acactttacg      1800
     gacagtatac gtgctgaaag ctaaaagtga tgtagtggat gcgttcaaaa agtatgctgc      1860
     gatggctacg tctcactttg aacggaagat cgcgagacta cgtagtgata atgggagtga      1920
     atacatgaat gaagaactga taacgtactg caatgagtcc ggaatcatta tggaaccgag      1980
     tgtgccgtat acaccgcaac aaaacggcgt cgcggagcgc atgaacagaa cgattattga      2040
     acgcgcgcgt gcgatgctag atgaatcagg tattaatcga atgatgtggt cagaagcagt      2100
     acaagcagcg gttcatgtga taaatcgaag tccgacgaac gctttaacgg ttacgaaaac      2160
     accgtacgaa atgtggtacg ggcgcaagcc agacgtttcg aggcttcgcg ttttcggaag      2220
     caaagtgttt tgtcatgccc cgaaagaaaa gcgatctaaa ttggacgtta agagtcgtgt      2280
     atgctatctg atcggttacg gttgtaacgg ctaccgcgta tgggaaccga accagcgaaa      2340
     agtgatcgtg tgtcgtgatg tagtgattga agagcttccg gtgaaacgaa gcaagcaccc      2400
     ggaagtgtac acaaacgatc atctggtgtc ggatcggcta caagaaccag aaacaagtga      2460
     tttgaaaagt gcggaaatag tgacgggacg aaaagaagtt tcggtagatg aacaagattc      2520
     ctccgaggag gatggtgaag attacgaaga tgcggaagat ggaaatacgc cattgagaag      2580
     aagtcaacgg cagcggaagc ttccggaacg tcttgcggat tatgaagttt gtgtggcatt      2640
     cgcgttaaat gctgaaaatt atgtggagga gttgccggaa accgttgaag agctgcgtaa      2700
     gcgagaggat tggcccgagt gggatgcggc gatcaaggat gagctgaaat cgttggagaa      2760
     aaatcgcacc tgggacctgg tggatcttcc cgctggtaaa cgcgctattt caagtaagtg      2820
     ggtcttcaaa atcaaataca cggcaaatgg agatgttgat agatacaagg cacgcctcgt      2880
     ggcaaaggga tgctcccagc gccaaggctt cgactatcaa gaaacgtacg cacccgtagt      2940
     tcggattagc actgttcgca cgttgctagc agtagcggtc cagaagaacc tccacgtcca      3000
     ccagatggat gttcgtaccg ctttcctgaa cggaagtctt tcggaaaccg tttatatgcg      3060
     cctgcccaca ggatttgaga gggggaaaaa ggtttgtaag ctaaacaaat ccctttatgg      3120
     cctgaaacag gcgccccgca gttggaatga aagattcaac aaattcatgg tgcatcttgg      3180
     cttcaagcgg tcggaacacg acagttgttt gtacgtacgg aataaaaacg gaattgtctc      3240
     gtatttgatt ctttacgtgg acgatatcat cttggcatca agctcattgg acgagctggt      3300
     gaagataaaa cgttccttga cccaggaatt cgaaatggat gatatgaagg aactaaacca      3360
     ttttcttggt ttgaaaatag aaagaaacat ggaagaaggg actctaatta tcaatcagtc      3420
     ccaatacatc cgtgcgttac ttaagcgttt ttccatgcaa gactgcaagc ccgtgtccac      3480
     cccattagaa gtgaacttga agctgacaac gaacgaatca gaaccggtaa cgaagcatcc      3540
     gtatcgagaa ctagtagggt gcctcacata cctcatgtta tcgtcacggc ctgatattag      3600
     ttcagctgta aacttcctta gccgtttcca aagcggagca actgacaccc actggacaca      3660
     tttgaaacga gtattgcgct acctacaggg cacaaaggat gacagccttg tttatcgacg      3720
     caacaggaac tcagagcccc ttgctggatt tgccgatgcc gattggggaa gcgacgtcaa      3780
     cgatcgaaag tcgacatctg gaagtctgtt ccagaagcag agtacgttgc gctcagtcag      3840
     gcggcatgcg atgctgtatg gctcagaaac gttttgaagg atctcggagt cgattgctgc      3900
     tctcccacaa cattgtttga ggataatcaa tcctgtatcc atattgccag cgaaccttgt      3960
     gaccagaaaa ggttaaaaca tttggatata cgctaccatt ttatccgtga atgcattcaa      4020
     gccggtgaaa tacgagtgga gtacctaccg acgcagaagc aggttgcgga tatgtttacc      4080
     aagagtcttc cgactaggag cttccagata caccgtctca cgcttggtct gagaggggg       4139
//
ID   Copia-4_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   supercont1.10;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_AA_;
KW   Copia-4_AA-I; Copia-4_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.10; Positions 4191044 4190872.
XX
SQ   Sequence 173 BP; 44 A; 35 C; 28 G; 66 T; 0 other;
     tgttgtgaaa cagacgacag cgtaattact caagtttgtt atgttatatt ttagagtgta        60
     agccccaata ttaaaccgtg ccactctttg ttatgatgct cttcattttc tcttttgtcg       120
     tctcattctt aataaagcca tcactgcgtt aacagcaaac tgtgttttcg tca              173
//
ID   Copia-4_BTa-I repbase;    DNA;    INV; 4608 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4608
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 576-576 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..1406
FT                 /product="Copia-4_BTa-I_1p"
FT                 /translation="MDTTKSKKKNIKPFEGEKYSVWKIRVRAVLTELDCLC
FT                 VIDGPIPEKLPDDWATKNRQAKSVIIEYLGDSHLHFASPEKSACEIFKDLD
FT                 AIYERKSIATQITLRKKLLSLKFNAGDKLMSHFTVFDELLTELQAAGAKLE
FT                 EADKVAQLLTSLPANYDSISTAIETLSEDNLTLSFVKTRLLDHEMKLKRNI
FT                 DTSAKVLNIQPGGSASGPNFYKHPKKNFSRARKNFKPKFGKSAKPSKAPRC
FT                 YHCGRTNHLVKDCYYSKQVKGANDNKFRRQVQLCHDPEKDVKVSPSNFAFM
FT                 VRSFPDTADFDEGRKLNFILDSGASVHIIKRDDVFAEFVHLQPPMKICVAK
FT                 DDTYITAYKRGNINVASESGFKGILEDVLFCPEVPYNFLSVPRIQKSGYDV
FT                 LFHQNGVSIMKGSSVTLHGEPFQNFIIN"
FT   CDS           join(1375..1776,1671..4403)
FT                 /product="Copia-4_BTa-I_2p"
FT                 /translation="MVSLFKILLSIKLFIDNPELKVYNLNFSDKYKIWHER
FT                 LGHMSKGKFLELKSHGMCEDIDQIKNIVPNDILCEACISGKQSKLSFGKAK
FT                 YKSHVGRPLFKVHIQMLLVQSLPLQCVTKIILFFLWMNTHIIVLRIGTYSD
FT                 VAGPITPSTMCDQNYFVLFVDEYTHYCVTYLIEHKSQVFFMFKDFIAKSEA
FT                 HFGVKTVHLYCDNGGEYFSNEMKQFCVERGISYHPTIPRTPQQNGIAERMV
FT                 RTITERARAMLIGAELDKAFWGEAVLTATCLINITPTKALELNKTPYEAWH
FT                 GKKPRMKFLRVFGSTVYIHDDTRKRKFDEKSWKAILVGYDPNGYKVWDVKN
FT                 EKFARVRNVIVDETNYIISRPVMKSRLTDKNQVETDRTELVSKSEISKLEN
FT                 KNGVKTDTTELMSKSGISKLDKNEINSENSEKVNSESREPENINSGEELKL
FT                 KVRYDSKANKWCKISETEGNSDISSTRENNHENLHKPNTELRRSERIKQLP
FT                 DLNYDENKTDELNFNTYLNFDNYLFAAQSLNCNIPSTFQEIESSPDKLKWQ
FT                 HAVNEELNSLKLNNTWTLVPRPDGKNIVDCKWVFTLKNDEFGNPVKFKARL
FT                 VARGFSQKFAEDYNETFAPVTRISSFRILLAFPNQFDLLVHHMDVKTAFLN
FT                 GVLQEEIYMRVPEGVENSGNQVCKLNKALYGLKQGARCWFETFEVKLLHVG
FT                 FKNSPADRCIYFLDKGSIDKNIYIILFVDDVVIICKNSETMSNFKRYLSKE
FT                 FRMTDLCEIKLFLGIKIERSDGIVSLNQCAYIDSVLKKFNMIECNSASTPL
FT                 ESKLNFMALNSNEKYDAPCQNLIGCLMYVMICMRPDLCVAVNILSRYASKG
FT                 NKELWQCLKRVLRYLKGSSELKLTYKRNDFSEILSGYVDSDWATDQNDRKS
FT                 TTGFLFKLFENCTVCWNTRKQNSVAASSTEAEYMALFEAVREALWLKSFLL
FT                 SIDVSIIKPIPIYEDNHGCISISKNPVSHKRSKHIDIKYHFSREQVEKKVI
FT                 DVKYVFTGNQLADILTKPLSVCAFRKLRSGLGLEGSTTL"
XX
SQ   Sequence 4608 BP; 1567 A; 777 C; 960 G; 1304 T; 0 other;
     ggttatggag cccagcttac gcgatacgaa caaaaatccg cgagcgtgac cgcgtaaacg        60
     gaaatcgagt gaagtgttta taaaaacctt gtaaaaactt gtgtgtatta aattgtgtgt       120
     atatttgacg tgtaaataaa atggatacta cgaagagtaa gaagaaaaac attaaaccct       180
     tcgagggtga gaaatatagt gtatggaaga tcagagtgcg tgctgttctt accgaacttg       240
     attgtttatg tgtaattgat ggaccaatac ccgaaaagct acccgacgat tgggcaacca       300
     aaaatcgcca ggcgaaaagt gtgatcattg aatacttggg tgactcccac ctccattttg       360
     catcccccga aaaatccgcg tgtgaaattt tcaaagacct agatgctatt tacgagagaa       420
     agagcattgc gacacagatc actctgcgca aaaagctctt atctctgaag ttcaacgcgg       480
     gtgataaact aatgtcacat tttacggttt ttgacgaact attaacggaa ttacaagcag       540
     ccggtgcaaa actggaggag gctgataaag ttgctcaact tttaacttct ctgccggcaa       600
     attacgactc tattagcacg gctattgaga cattgtccga ggacaattta accctctctt       660
     tcgtgaaaac cagactttta gaccacgaaa tgaagctaaa aagaaatatt gacaccagtg       720
     ctaaagtgct taatattcag cccggtggaa gcgcaagtgg tccaaatttt tataagcatc       780
     caaagaaaaa tttttcacgg gcgcgaaaaa attttaagcc caagtttggc aaaagtgcga       840
     aaccgtcaaa agctcccaga tgttatcatt gcgggcgcac aaatcattta gtgaaagatt       900
     gctattactc caagcaagtg aaaggtgcga acgataacaa atttcgccgt caagttcagc       960
     tgtgccatga tcccgaaaag gacgtaaaag tgtccccgtc aaatttcgca ttcatggttc      1020
     gcagttttcc tgatactgct gattttgatg agggaagaaa gctcaacttc atcctggatt      1080
     ctggcgcatc ggtacacatt atcaaaagag atgacgtttt cgctgaattc gtccatctcc      1140
     aaccaccgat gaagatatgt gtggcaaaag atgacaccta tattactgct tacaaacggg      1200
     gaaacatcaa tgttgccagc gagtccggct tcaaaggaat tctggaggac gttcttttct      1260
     gccccgaagt tccttacaat ttcctctctg tgccgagaat tcagaaatct ggctatgatg      1320
     tcctttttca tcaaaatgga gtcagcataa tgaagggaag tagcgttacc ttacatggtg      1380
     agccttttca aaattttatt atcaattaaa ttatttattg ataatcctga gttgaaagtt      1440
     tataacttga atttttcaga taaatataaa atatggcatg agcgtttagg tcatatgagc      1500
     aaaggaaaat ttttagagtt gaaaagtcat ggaatgtgtg aggatattga tcaaattaaa      1560
     aatatcgtgc ctaatgatat actttgtgag gcttgcataa gtggcaaaca gtcgaaattg      1620
     tcattcggaa aagccaaata taaaagtcac gtcggtaggc ctctatttaa ggtacatatt      1680
     cagatgttgc tggtccaatc actccctcta caatgtgtga ccaaaattat tttgttcttt      1740
     ttgtggatga atacacacat tattgtgtta cgtatttaat tgagcacaaa tcacaggtat      1800
     ttttcatgtt taaggatttt attgcaaaaa gtgaagcaca ttttggagta aaaactgtgc      1860
     atttgtactg tgataatggt ggagaatatt tttcaaatga gatgaaacag ttttgtgttg      1920
     aacgaggtat ttcttatcac ccaacaattc cacgaacccc acaacaaaat ggcatcgccg      1980
     aacgcatggt gagaacaata acagagagag ctcgtgcaat gctcattgga gctgagttag      2040
     acaaagcttt ttggggtgaa gctgtcctaa cagccacatg cctaattaat ataactccaa      2100
     caaaagcttt agaactaaat aaaactccat atgaagcatg gcatggtaaa aaaccaagaa      2160
     tgaaattttt aagggtattt ggctctactg tttacattca tgatgatacc aggaaaagaa      2220
     aatttgacga aaaatcctgg aaagccattc tggtcggtta tgatccgaac ggttataaag      2280
     tgtgggacgt gaaaaatgaa aaatttgcaa gagtcagaaa tgtaatagtc gatgagacga      2340
     attacataat atcgagaccc gtaatgaaat ctcgattgac cgataaaaat caagtggaaa      2400
     ctgataggac tgaattagtg tcaaaatcag aaatctccaa acttgaaaat aaaaatggag      2460
     tgaaaactga tacgactgaa ttaatgtcga aatcaggaat ctcaaaactt gataaaaatg      2520
     aaattaactc tgaaaactca gaaaaggtga attctgagag tagagaacca gaaaatataa      2580
     attctggaga agagttgaaa ttgaaggtca ggtatgactc aaaagcaaat aagtggtgta      2640
     agataagtga aacagaggga aactctgata tcagttcaac acgagaaaac aaccatgaaa      2700
     atctccataa acctaatact gaattgagga gaagtgaacg aattaagcaa ctaccagatt      2760
     taaactacga tgagaacaaa accgatgaac ttaattttaa tacgtaccta aattttgata      2820
     actatctgtt tgcagctcaa tctttaaatt gcaatatccc ctccacattc caagaaatcg      2880
     agagtagccc tgataaatta aagtggcaac atgctgtaaa tgaggagcta aattctttaa      2940
     agttaaataa tacttggacc ttggtgccaa gacccgatgg caaaaatatt gtcgattgta      3000
     aatgggtttt cacgttgaaa aatgatgaat ttggaaaccc agtgaaattt aaagcgagat      3060
     tagtagcacg aggttttagc caaaaatttg cagaggacta taatgagact ttcgctcctg      3120
     ttactcgaat ttcaagtttt agaattcttt tagcatttcc aaatcagttt gatttattag      3180
     ttcatcatat ggacgttaaa acggcgttcc ttaacggtgt tctacaggaa gaaatttaca      3240
     tgcgagttcc tgagggagtt gaaaattcag ggaatcaagt gtgtaaattg aacaaagcac      3300
     tttatggttt gaaacaaggt gcgagatgct ggtttgaaac atttgaggtg aaactcttgc      3360
     acgtaggttt caaaaattcg cccgctgacc ggtgcattta ttttctagac aaagggtcaa      3420
     tcgacaaaaa catttacatc attcttttcg tcgatgatgt ggtcataatt tgtaaaaatt      3480
     ctgaaactat gagtaatttt aaacgatact tgagtaaaga atttcgtatg acagatttat      3540
     gcgaaatcaa acttttctta gggataaaaa ttgagcgaag cgatggaata gtaagcttga      3600
     atcaatgtgc ttacattgat tcagttctta agaaatttaa catgattgag tgcaatagtg      3660
     cgagtactcc tctggaaagc aaattgaatt tcatggcttt gaattcaaat gagaagtatg      3720
     atgctccgtg tcaaaatttg attggttgct taatgtatgt aatgatatgc atgcgacctg      3780
     atttatgcgt tgcagtaaat atattgagta ggtatgctag taaaggtaat aaagaattat      3840
     ggcaatgctt gaaaagagtt ttgagatatt taaaaggttc aagcgaattg aaattgacgt      3900
     ataagagaaa tgatttctct gaaattttaa gtggctatgt ggattctgat tgggcgactg      3960
     atcaaaatga tagaaaaagt acaacaggtt tcttatttaa attatttgaa aactgcactg      4020
     tctgctggaa cacgagaaaa caaaactctg tggctgcttc atctactgaa gcagaatata      4080
     tggcactttt tgaagcagtt agggaggctt tatggttgaa atcattttta ctcagcatcg      4140
     atgtcagcat aataaagccc attcccattt atgaagataa tcatggttgc attagtatat      4200
     caaagaatcc tgtaagccac aaaagatcga agcatatcga cataaaatat catttttcta      4260
     gagaacaagt tgaaaagaag gttattgacg taaagtatgt gttcacagga aatcagctgg      4320
     ccgacatttt gaccaagccg ctatcagtgt gtgcattcag aaagctgaga tctggtcttg      4380
     gactggaagg ctcaacaacc ctatgaacgg tctggtgaag gtttttctgg gttttccttc      4440
     atccgcagca ccaaatggtg gatcgcatcg taaaatctct ccccagttgg cactgagaag      4500
     acaaggacac ggacgttcta cgcacccacg ccggagggtc atcatcattt cactcggcga      4560
     tgttgtaaaa agaaaaactg ttgatccaga ttaattattg aggaggcg                   4608
//
ID   Copia-4_BTa-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-290
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 601-601 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 290 BP; 75 A; 72 C; 42 G; 101 T; 0 other;
     tgttgtaaat atgtaaattg taaatatcca ataatcaatc tgacaactaa gcagagtgac        60
     cagcccttgt gcacacatgt gcccttgaaa ctgtttacga ctttctagcc ttttgtttct       120
     ccctcgcatc tgcatctgcg agatgcatcc ctcctcttga ctcttcagtc gtttcctcga       180
     tccgtcctta gcgtcttgtt cagctccagt gctgtgaaat tcaataaaga aatcatattc       240
     gtctatacca aagtattctc ttttaattaa aataaccttg atttccttca                  290
//
ID   Copia-4_Cfl-I repbase;    DNA;    INV; 4138 BP.
XX
AC   AEAB01015207;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_Cfl_;
KW   Copia-4_Cfl-LTR; Copia-4_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4138
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01015207; Positions    4718     581.
XX
CC   Positions [1449-1973] - Integrase core
CC   'GAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..2537
FT                 /product="Copia-4_Cfl-I_1p"
FT                 /translation="MSAAHGIQTIEKLTEENYESWKIQMRSVLVCNDMWDY
FT                 VNGTIPRTAENTAMWTVKDQKALALIVLSVSRGQLNHVKRAETSEAAWNEL
FT                 KRVHESKGPVRKATLYKQLYRMRKDSEISMNTYINDFTNKTEQLTEAGIKI
FT                 PDDLLSIMLLSSLPDDFENFSIAIESRNEIPNIDSLKVKLLEEEARQNDRA
FT                 GRNDPEKGQNSDALISRAHGRDKQKRSNLTDKYAKQNLRKFIGKCFNYSKI
FT                 GHKSADCRIKTKRGETNNKNDVMTAIVCNTKVEKSSDWFLDSGATRHMCND
FT                 DQRFTVLNDTDRSKVFTAAEHCVDSSSAGEISLVVKNRGSKNTIKLKDTMY
FT                 VPALRNNLVSVSTITDNGYTVVFDKYRARIKRMDGFTALTATKKNQLYVVD
FT                 ETNNSAMATHDVNDDKMTRWHQRYGHLNISDLKNLKMKELVKGIDFTTKTD
FT                 KFQCEICDQSKIHIQPFKPSKNRENGILDLIHSDICGPMNVESLGGARYFV
FT                 TFIDDFSRYTEIIMLRKRSDVLQAFRNYKRRMENQTGRRIKKLRTDNGREY
FT                 LSNDFKKFLEDEGIARQLSVEYTPQQNGVAERANRTIVEMARCMLQQSGLP
FT                 QSLWAEAVSTATFIRNRCPTKCLNDKTPFEAWTDNKPYVGFFRIFGSKVIA
FT                 LNKGPKRGKFLRKGDEYILVGYSEESKAYRLWKPGTRTVIKSRDVKFYEKI
FT                 HSHNDKWDASIKAPNNSINSNEKGASKIKLPLLKDIHSEDEEITNDYNQQL
FT                 EDGNAQEEIDDSLDDNEDNEENVSNLQRGRGRPKLLKTGQPGRPKKIYQRK
FT                 DTNHDPLNVIEAINRDDRSD"
XX
SQ   Sequence 4138 BP; 1594 A; 678 C; 847 G; 1019 T; 0 other;
     ggttatggac ccaggatacg tatcggatct gtgtatcgtg tgaaagaaaa gttatcgtct        60
     caaaaatcaa gatgtccgca gcacatggga tccagaccat tgaaaaatta accgaagaaa       120
     attacgaatc atggaagatt caaatgagaa gtgtgctggt atgtaatgac atgtgggatt       180
     atgtaaatgg tactataccg agaaccgctg aaaatacagc gatgtggaca gtaaaagatc       240
     agaaagccct ggcattaata gtattaagcg tgtcgcgtgg gcaattaaat catgtaaaaa       300
     gagccgaaac atcggaagct gcgtggaacg aactcaagcg tgttcacgaa tcgaaaggac       360
     cggtaagaaa agccacactt tataaacaat tatatcgcat gagaaaagat tcagaaatct       420
     ctatgaacac gtacataaat gattttacta ataaaaccga acaattaacc gaagcaggaa       480
     tcaagatacc ggacgatctc ctgtcgataa tgttgttatc ttcattgcct gatgatttcg       540
     aaaattttag catagccata gaatctcgca acgaaattcc gaatatcgac agtctaaaag       600
     taaaattact agaagaagag gcgcgccaaa acgaccgtgc gggaaggaac gatccggaaa       660
     aaggacagaa tagtgacgcg ttaatttctc gtgcacatgg tcgcgacaaa caaaaacgct       720
     caaatttaac ggataaatat gcaaaacaaa atttaaggaa atttattgga aagtgcttta       780
     actacagcaa gatcggacat aaaagtgctg actgtcgaat aaaaacaaaa cgaggcgaaa       840
     caaacaataa aaatgatgtg atgaccgcca tagtttgtaa taccaaagtg gaaaaatcaa       900
     gtgactggtt tctagatagc ggagcgacgc gacatatgtg taatgacgac caaagattta       960
     cggtgttaaa tgatacagat cgctctaaag tgtttacggc cgcagaacat tgcgttgact      1020
     cgtcgagtgc cggtgaaatt agtctggtgg taaaaaatcg cggttcgaaa aatacgataa      1080
     aattaaaaga cacaatgtat gttccagcgc tacgaaataa tctggtgtca gtctcaacaa      1140
     tcacagataa tggatatacg gtggtgtttg ataaatatcg tgcaaggata aaacgcatgg      1200
     atggatttac agctttaaca gcaacgaaga aaaatcaact ctacgtggta gacgaaacaa      1260
     acaacagtgc gatggctact catgatgtga atgatgataa aatgactcga tggcatcaga      1320
     ggtatggaca tttgaacatt tcagatctga aaaatctaaa aatgaaagag ttagttaaag      1380
     gtattgattt tacaacaaaa acggataaat ttcaatgtga gatttgcgat caaagtaaaa      1440
     tacatattca accatttaaa ccatcaaaga acagagaaaa cggaatacta gatttgatac      1500
     actctgatat ttgcggtcca atgaatgttg aatcattggg aggagcaagg tattttgtta      1560
     catttattga cgatttctca agatacactg aaattattat gcttcgcaag cgatctgatg      1620
     ttctgcaagc tttcagaaat tataaaagaa gaatggaaaa tcaaacagga cgacgcatta      1680
     agaaattacg cacggacaac ggaagagaat atttgtccaa tgacttcaaa aaatttttag      1740
     aagatgaagg catcgctcga caactatctg tggaatatac accacaacag aatggtgttg      1800
     cagaacgggc gaacagaacg attgttgaaa tggcgagatg catgttacaa caatcaggat      1860
     taccacaatc tttatgggct gaagcggtga gtacagcaac gtttataaga aatagatgtc      1920
     cgacaaaatg tctcaacgac aaaacaccgt ttgaagcatg gacagacaat aaaccttatg      1980
     tgggtttctt tcgcattttt ggaagcaagg taattgcgtt aaataaaggc cctaaacgtg      2040
     gaaagtttct tcgaaaggga gatgaatata ttttagtagg atattcagaa gaaagcaaag      2100
     cgtacagatt atggaaacct ggaacgagaa cggtaataaa atcgcgtgac gttaaatttt      2160
     atgaaaaaat tcattcacac aacgataaat gggatgcttc aattaaagca ccaaacaatt      2220
     caattaactc aaatgaaaaa ggagcatcaa aaattaaatt accattgtta aaggatattc      2280
     actcagaaga tgaagaaata acaaacgatt acaatcaaca acttgaagat ggtaacgcac      2340
     aggaagaaat cgacgattcg cttgacgaca atgaagacaa cgaagaaaat gtaagtaatt      2400
     tacaacgtgg tcgtggacgt cctaaattat tgaaaacagg tcagccagga agacctaaga      2460
     aaatttatca acgcaaggat acaaatcatg atcctttgaa tgtaattgaa gctataaatc      2520
     gagatgatcg atcagattga ctagcagcta tgaacaaaga aattaaaatt ttacgagaaa      2580
     acaatacttg gacgttggta ccaagacctg aaggaaagaa aatacttaca accagatggg      2640
     tttttaaaat aaaacgacat caaaatggag aaattgaaaa gtacaaagcg agattagtag      2700
     ctcggggtca cacgcaacaa aaagggatag actatgaaga agtctttgca ccagtagcac      2760
     gttatgaatc gattagagca ttattggctg cctcagtaaa tgaagaaatg tatgttgacc      2820
     aaatggatgt aatctctgct tatgtacaag gagaactctc ggatgaaatc tacatggaac      2880
     agccagaaat gtttatcgaa gaaagtcaag aagatatggt atgtaagctg aagaaacctc      2940
     tctatggatt gaaacaatcg ggacgagaat ggtatcgaaa actagacaac tttctcttaa      3000
     gccacggagg cagaagaact gaagcggatc catgtattta cacatttaat gaaaacaaat      3060
     ctcgagtgat ccttatagta tacgttgacg acctaattct agcctctaaa gaatacaacg      3120
     aactcataaa aatcaagaaa aatttacaat ccactttcaa gatggtcgat cttggaccaa      3180
     ttaatcatat cctaggtatg gatatcaaac gagaaggttt aaccggtaaa cttcgtttat      3240
     ctcaagaaaa atatgcaaaa agtttaatag agaaattcta cttaaacgac gcaaaaagtg      3300
     taacgactcc actggaagca aacataaaaa tctcaagaga tcctcaagag gtcctcataa      3360
     tgatgaagaa cgtttagaga tgcaaaagaa accatatcgt gaactcatcg gtggattaat      3420
     ctatctagca aatgcaacac gtccagatat tgcgtatgct gctaacgcat taagtcgatt      3480
     ttgtacagat cccggtacat cacattggtc cctcgcaaaa agagtattaa gatacaatac      3540
     ttgaaagata cgtcacatta tggaattact tacatgaaga gtgaggacaa acttcaagca      3600
     tttactgatt ccgattgggc aggagatatc gatgacagaa aatcgtgtac aggaaacgtg      3660
     attatgctag caggtggacc tataagttgg cgatccaaaa agcaagcgtc agtagcgtta      3720
     tctaccatgg aagccgagta cgcagcattg gccgaagttt ccaaagaagt agtatattta      3780
     aaaagactat tgaactatat cggttttgaa aagtatgtag aatctcctat acacatatat      3840
     tgcgataatc aaagtgcgat tgaattatcg aagaacgcgg ttttacacaa aagaagtaaa      3900
     catatagaca taagctttca cttcactaga gaattagtag aaaagaaaga agttaaagta      3960
     acgtatttaa gaacagatca aatgttagct gatatcttaa caaaaccttt accaaaaatt      4020
     aaacaccaaa gatgtgtaac aatgttgaac ttaggataat gtagaaacta aaaatttcac      4080
     atttgtgttt aatgcatgat ttattttttt acttaaatgc actccatgat aggagggg        4138
//
ID   Copia-4_Cfl-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   AEAB01015207;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_Cfl_;
KW   Copia-4_Cfl-LTR; Copia-4_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-286
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01015207; Positions     580     295.
XX
SQ   Sequence 286 BP; 72 A; 56 C; 46 G; 112 T; 0 other;
     tgttggagat aagatcatcg agcgcattgt tatatgttat tgtcttaata atatagctta        60
     tatccgaatg atggcgcgga agatatgcac gtttatcttt tctaatgtcc atctagtatc       120
     ttttatgtta ctgttcttct ctgtgctttt ccctcgctat tccgcgcgac atgtgtatgt       180
     tcaaatcttt ctcttaataa agttattata ttaaacgtga tcattaatgg gcttcaatta       240
     aacttgtgtt ctcgaatttc cacgtcaaac ctcgcaattc ccatca                      286
//
ID   Copia-4_CoFl-I repbase;    DNA;    INV; 6580 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Copia-4_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6580
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2267-2267 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. It encodes two gag proteins, but
CC   no pol protein.
XX
FH   Key           Location/Qualifiers
FT   CDS           1264..3366
FT                 /product="Copia-4_CoFl-I_1p"
FT                 /note="gag."
FT                 /translation="MERAADAMSSATEKIPEFVQAANLMTKALNLVSTKID
FT                 SLTRATESIQDSQRAHRNSEVPPLFNSTINDQRFQRNTNMSDFTLHNNPLP
FT                 TPFGNINQRPYNRDSLDDTDRLDNLNNSLDNLRKSIDSNKNTSKPFFKKNY
FT                 ILTQKGSFNVWFDHLTSELKTNDLSDFIENSNLIDKYTPDEIEFKKSLVRE
FT                 LLINHLDEYYHKKVLNIVDPREIINKLKSFRMAEANITASSVRAKLYRLKI
FT                 TTKEKVNDFIDRFDHIVREYENSDGMVPLTEEEKRSAFYQAVADKFSELRT
FT                 ANMVRRQTTSTEMSLEEMKTSLIQLQAERNQSESNSEQARANMATGSQRVN
FT                 DQANKDTKCFRCNKHGHRLLNCPLSQYGLWYCFYCQDFEYHKGDACPNRNH
FT                 PKDGYVKNNSNDNNNNRGKNNSKLRGNGRGKGNGNFKFRGNGRVNKKQGNM
FT                 STQAKQQQATKFKAMLTGNHIDNYRGKTKISFIADSGATHHVVNKGIILTN
FT                 FKKCNNEFIRSANKNDSANIIIDGKGDLIFKLNLNEQFKLTNVIAAKDISN
FT                 NLISLRQFADAGLGIYLDDKYLEIFDKETGKIYISGVYEKPNWIIELEVEN
FT                 QTTAKTRNWNKYQFSAQIVSLDEFMTQSQTDIVDILNSQNSESMDESISPE
FT                 NTQSEIGREKKDELNTSEEQSEDHTSLVMVPTFFLSRGRAGLAMKGFRGGK
FT                 Q"
FT   CDS           4554..6578
FT                 /product="Copia-4_CoFl-I_2p"
FT                 /note="gag."
FT                 /translation="MERAADAMSSATEKIPEFVQAANLMTKALNLVSTKID
FT                 SLTRATESIQDSQRAHRNSEVPPLFNSTINDQRFQRNTNMSDFTLHNNPLP
FT                 TPFGNINQRPYNRDSLDDTDRLDNLNNSLDNLRKSIDSNKNTSKPFFKKNY
FT                 ILTQKGSFNVWFDHLTSELKTNDLSDFIENSNLIDKYTPDEIEFKKSLVRE
FT                 LLINHLDEYYHKKVLNIVDPREIINKLKSFRMAEANITASSVRAKLYRLKI
FT                 TTKEKVNDFIDRFDHIVREYENSDGMVPLTEEEKRSAFYQAVADKFSELRT
FT                 ANMVRRQTTSTEMSLEEMKTSLIQLQAERNQSESNSEQARANMATGSQRVN
FT                 DQANKDTKCFRCNKHGHRLLNCPLSQYGLWYCFYCQDFEYHKGDACPNRNH
FT                 PKDGYVKNNSNDNNNNRGKNNSKLRGNGRGKGNGNFKFRGNGRVNKKQGNM
FT                 STQAKQQQATKFKAMLTGNHIDNYRGKTKISFIADSGATHHVVNKGIILTN
FT                 FKKCNNEFIRSANKNDSANIIIDGKGDLIFKLNLNEQFKLTNVIAAKDISN
FT                 NLISLRQFADAGLGIYLDDKYLEIFDKETGKIYISGVYEKPNWIIELEVEN
FT                 QTTAKTRNWNKYQFSAQIVSLDEFMTQSQTDIVDILNSQNSESMDESISPE
FT                 NTQSEIGREKKDELNTSEEQSEDHTS"
XX
SQ   Sequence 6580 BP; 2224 A; 1286 C; 1368 G; 1702 T; 0 other;
     ggttatggtc cccacctttt ttctctcgag aggacgagcc ggccttgcca tgaagggctt        60
     cagaggagga aagcagtgag tttttttttc tcagagtgtc ttgcttcaga ggttccaagt       120
     cgtgtttcct gtgtcagggt gataatgtgc gtgagcgaat ggtgcagggc acagtgctat       180
     taaatttttt attgtccgcg tgcggccagc gtagttcaat gtagaagtgc gtgttggtgg       240
     tcgacataat aaaagcccgc gcgaacacca cgatcacgca gacctgagcg aggccgccat       300
     tttttggcgc gcacgggcct cgagagctac atgcacgtga acaacatacg cgaattcttg       360
     cttgaagagg ataaattttt tttctctact cagagtacgt tttttttttc ctattaattt       420
     ggtgctgtca gtttgttaaa atttacatcc ttcgaatagg tgtatgtacc tataggtacg       480
     taacttgcaa gcggtgctgc aagttaataa actcccgcag cagttgacct tcttaaccat       540
     tgcggagagg ggctgttagt ttttctcgcg aagcttcggt tttacatgcg cgagtgcacc       600
     tctttcccac gtttttttcg agttacacgc agtgcggtga cacgagttgg gagggagcgc       660
     gtgtgtgaga tttgaggtta gcggtgctaa caagccaggt gttgattcca accggacagg       720
     cagtgccgtc cgtgtacgag aacacgccca cataataaat gcatgcatgc atattaattt       780
     cttgtgtttg gtatattcag atgtgtgtca acaataacaa cgagggctgt ttctcagatg       840
     aatgaacaag accaagagtc ccaaataaat gtagagtcca actttaccga aacacctcca       900
     agggacagtc ctcaagattt accagttgac aactcagagg aaggtgagaa tatttttttc       960
     tcctacttgt tctttccaga gtatcagagt tgtgaatcat ttatatcaga gaggcctatc      1020
     gaggtgctgg caatataaaa ccagcagctt caacttctgc aaaatccaaa caatctagag      1080
     acatgattca caatttcaga gttgtcggag aacacgacta cccctcaact aagaccagag      1140
     gacactgaca acaccattca gcaaccagag attgttgaaa tcaggaacgt tggagctgaa      1200
     caagcagaag taatccaatc ttgggatacg gcagttgaca aacttctaat actgtcaaca      1260
     aagatggaaa gggcggcaga cgccatgtcc agtgcaacag aaaagattcc ggagtttgtt      1320
     caggctgcca acctcatgac caaagctctc aatctagtat ccactaagat tgacagcttg      1380
     acacgtgcca cagagtccat ccaggactct cagagagccc atagaaactc agaggtacca      1440
     cctttattta actctaccat taacgatcag aggtttcaaa gaaacacgaa tatgagtgac      1500
     tttactcttc ataataatcc tctcccaact ccctttggta acattaatca gagaccatat      1560
     aatcgagata gcttagatga cactgataga ctggataatc taaataattc actagacaat      1620
     ctcagaaaat caattgattc aaataagaat acttctaaac ctttctttaa gaaaaactac      1680
     attctgactc aaaaagggtc tttcaatgtt tggtttgatc acttaacttc agaattaaaa      1740
     actaatgatc tttcagattt catagaaaat agtaacttaa ttgataaata cactccagat      1800
     gaaatcgaat ttaagaagag tctagttaga gaattgctaa ttaatcactt agatgaatat      1860
     tatcacaaga aggtactaaa cattgtagac cctagagaaa ttataaataa attaaaatcc      1920
     tttagaatgg ctgaagccaa tataacagcc tcgtcagtca gagccaaact atatcgtctt      1980
     aaaattacaa cgaaagagaa agtcaatgac ttcattgaca ggtttgatca tatagtaaga      2040
     gagtatgaaa actcagacgg tatggtacct ctgactgagg aggaaaagag gtcagccttt      2100
     taccaagccg tggcagacaa attctcagag ctacgtacag ctaacatggt taggcgacag      2160
     accacaagta ctgagatgag tcttgaagaa atgaagacaa gtctaataca attgcaggca      2220
     gaaagaaatc aatcagagtc gaattcagag caggccaggg ccaacatggc tacaggcagt      2280
     cagagagtca acgatcaggc gaataaggac actaagtgtt tcagatgcaa caaacacggt      2340
     cacagactcc ttaactgtcc tctaagccag tatggactct ggtactgctt ttactgccag      2400
     gatttcgagt accacaaggg agatgcatgc ccaaacagga atcatcctaa agatgggtat      2460
     gttaaaaata attctaatga caataataat aatagaggta aaaacaatag caagctcaga      2520
     ggtaatggta gaggcaaagg caacggtaat tttaaattca gaggtaatgg ccgtgtaaat      2580
     aaaaagcaag gtaacatgag tacacaagcc aaacaacaac aggcaaccaa atttaaggct      2640
     atgttaacag gtaatcatat agataactac agaggtaaaa ctaaaatatc ttttattgct      2700
     gattccggag caactcatca cgttgttaac aaaggaatta ttctaacaaa ttttaagaaa      2760
     tgcaacaatg aattcatcag aagtgcaaat aaaaacgact cagccaacat cattattgat      2820
     gggaaaggcg acttaatttt taaactaaat ttaaatgaac agtttaaatt aacaaacgtg      2880
     atagctgcga aggacatctc caacaacttg atctccttaa gacaatttgc cgatgccggt      2940
     ttaggcatct atttagatga caaatatcta gaaatctttg acaaggaaac gggaaaaata      3000
     tatatctcag gcgtatatga gaaaccgaac tggataatag agttagaagt tgaaaatcaa      3060
     accactgcaa aaactagaaa ttggaataaa tatcagttct cggcacagat agtctcactg      3120
     gatgagttca tgacacaatc tcagactgat attgtagata ttctcaacag tcaaaattca      3180
     gagtctatgg atgagtctat cagtccagag aatacccagt ctgagattgg gagggagaag      3240
     aaagatgaac tcaatacttc agaagagcaa tcagaagatc atacttcact ggttatggtc      3300
     cccacctttt ttctctcgag aggacgagcc ggccttgcca tgaagggctt cagaggagga      3360
     aagcagtgag tttttttttc tcagagtgtc ttgcttcaga ggttccaagt cgtgtttcct      3420
     gtgtcagggt gataatgtgc gtgagcgaat ggtgcagggc acagtgctat taaatttttt      3480
     attgtccgcg tgcggccagc gtagttcaat gtagaagtgc gtgttggtgg tcgacataat      3540
     aaaagcccgc gcgaacacca cgatcacgca gacctgagcg aggccgccat tttttggcgc      3600
     gcacgggcct cgagagctac atgcacgtga acaacatacg cgaattcttg cttgaagagg      3660
     ataaattttt tttctctact cagagtacgt tttttttttc ctattaattt ggtgctgtca      3720
     gtttgttaaa atttacatcc ttcgaatagg tgtatgtacc tataggtacg taacttgcaa      3780
     gcggtgctgc aagttaataa actcccgcag cagttgacct tcttaaccat tgcggagagg      3840
     ggctgttagt ttttctcgcg aagcttcggt tttacatgcg cgagtgcacc tctttcccac      3900
     gtttttttcg agttacacgc agtgcggtga cacgagttgg gagggagcgc gtgtgtgaga      3960
     tttgaggtta gcggtgctaa caagccaggt gttgattcca accggacagg cagtgccgtc      4020
     cgtgtacgag aacacgccca cataataaat gcatgcatgc atattaattt cttgtgtttg      4080
     gtatattcag atgtgtgtca acaataacaa cgagggctgt ttctcagatg aatgaacaag      4140
     accaagagtc ccaaataaat gtagagtcca actttaccga aacacctcca agggacagtc      4200
     ctcaagattt accagttgac aactcagagg aaggtgagaa tatttttttc tcctacttgt      4260
     tctttccaga gtatcagagt tgtgaatcat ttatatcaga gaggcctatc gaggtgctgg      4320
     caatataaaa ccagcagctt caacttctgc aaaatccaaa caatctagag acatgattca      4380
     caatttcaga gttgtcggag aacacgacta cccctcaact aagaccagag gacactgaca      4440
     acaccattca gcaaccagag attgttgaaa tcaggaacgt tggagctgaa caagcagaag      4500
     taatccaatc ttgggatacg gcagttgaca aacttctaat actgtcaaca aagatggaaa      4560
     gggcggcaga cgccatgtcc agtgcaacag aaaagattcc ggagtttgtt caggctgcca      4620
     acctcatgac caaagctctc aatctagtat ccactaagat tgacagcttg acacgtgcca      4680
     cagagtccat ccaggactct cagagagccc atagaaactc agaggtacca cctttattta      4740
     actctaccat taacgatcag aggtttcaaa gaaacacgaa tatgagtgac tttactcttc      4800
     ataataatcc tctcccaact ccctttggta acattaatca gagaccatat aatcgagata      4860
     gcttagatga cactgataga ctggataatc taaataattc actagacaat ctcagaaaat      4920
     caattgattc aaataagaat acttctaaac ctttctttaa gaaaaactac attctgactc      4980
     aaaaagggtc tttcaatgtt tggtttgatc acttaacttc agaattaaaa actaatgatc      5040
     tttcagattt catagaaaat agtaacttaa ttgataaata cactccagat gaaatcgaat      5100
     ttaagaagag tctagttaga gaattgctaa ttaatcactt agatgaatat tatcacaaga      5160
     aggtactaaa cattgtagac cctagagaaa ttataaataa attaaaatcc tttagaatgg      5220
     ctgaagccaa tataacagcc tcgtcagtca gagccaaact atatcgtctt aaaattacaa      5280
     cgaaagagaa agtcaatgac ttcattgaca ggtttgatca tatagtaaga gagtatgaaa      5340
     actcagacgg tatggtacct ctgactgagg aggaaaagag gtcagccttt taccaagccg      5400
     tggcagacaa attctcagag ctacgtacag ctaacatggt taggcgacag accacaagta      5460
     ctgagatgag tcttgaagaa atgaagacaa gtctaataca attgcaggca gaaagaaatc      5520
     aatcagagtc gaattcagag caggccaggg ccaacatggc tacaggcagt cagagagtca      5580
     acgatcaggc gaataaggac actaagtgtt tcagatgcaa caaacacggt cacagactcc      5640
     ttaactgtcc tctaagccag tatggactct ggtactgctt ttactgccag gatttcgagt      5700
     accacaaggg agatgcatgc ccaaacagga atcatcctaa agatgggtat gttaaaaata      5760
     attctaatga caataataat aatagaggta aaaacaatag caagctcaga ggtaatggta      5820
     gaggcaaagg caacggtaat tttaaattca gaggtaatgg ccgtgtaaat aaaaagcaag      5880
     gtaacatgag tacacaagcc aaacaacaac aggcaaccaa atttaaggct atgttaacag      5940
     gtaatcatat agataactac agaggtaaaa ctaaaatatc ttttattgct gattccggag      6000
     caactcatca cgttgttaac aaaggaatta ttctaacaaa ttttaagaaa tgcaacaatg      6060
     aattcatcag aagtgcaaat aaaaacgact cagccaacat cattattgat gggaaaggcg      6120
     acttaatttt taaactaaat ttaaatgaac agtttaaatt aacaaacgtg atagctgcga      6180
     aggacatctc caacaacttg atctccttaa gacaatttgc cgatgccggt ttaggcatct      6240
     atttagatga caaatatcta gaaatctttg acaaggaaac gggaaaaata tatatctcag      6300
     gcgtatatga gaaaccgaac tggataatag agttagaagt tgaaaatcaa accactgcaa      6360
     aaactagaaa ttggaataaa tatcagttct cggcacagat agtctcactg gatgagttca      6420
     tgacacaatc tcagactgat attgtagata ttctcaacag tcaaaattca gagtctatgg      6480
     atgagtctat cagtccagag aatacccagt ctgagattgg gagggagaag aaagatgaac      6540
     tcaatacttc agaagagcaa tcagaagatc atacttcact                            6580
//
ID   Copia-4_CoFl-LTR repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-324
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2288-2288 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 324 BP; 71 A; 91 C; 63 G; 99 T; 0 other;
     tgtcaagaaa gtgagctttg agcaatcaaa attcccggct tgctcacaca tgcgccgcct        60
     tatggagaca tcgggcacta cagtcacttg agctcttcgt ggtcgtctgg cgacgctcac       120
     tagccccact gcttcttcgg cagccgaccg atacactgtc tctcttcttg atcgccacat       180
     tacagctgtt atattaattt tactgtatca gcctaaagct gaccttgctg tattacgtgt       240
     ttaaaataca ttgtgagatt aaatcttttg tgcctttttc cttcgcgagt gcctaccgtc       300
     atctccgagc ccactactct gaca                                              324
//
ID   Copia-4_CQ-I repbase;    DNA;    INV; 3426 BP.
XX
AC   AAWU01030460;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   13-OCT-2011 (Rel. 16.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_CQ_;
KW   Copia-4_CQ-LTR; Copia-4_CQ-I.
XX
NM   Copia-4_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3426
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 323-323 (2011).
XX
DR   Genome; AAWU01030460; Positions    4795    8220.
XX
CC   Positions [866-1399] - Integrase core
CC   'GCAA' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1045..3426
FT                 /product="Copia-4_CQ-I_1p"
FT                 /translation="MATAYFGKRISRLRCDNGGEYTGHAMRRFCKSKGIQL
FT                 ETTVPYTPEQNGSSERLNRTVVEKVRAILAASRLPRNLWGEAVYTAIYVLN
FT                 RSPSVAVEGDVTPYEAWHGKKPDVSILRVFGSDCYAHVPKQRRKKLDSKTE
FT                 KVKFMGYGPTGYRVWNGQKIFTARDVVFNELVFTKEKEENSASEEWVVVEK
FT                 SVVRQVEPVRQVEPARPVEPALPEDSEAESEYNTGEESAEEDEVVPVPVLT
FT                 PVGPSPQRDTEGREKRTIVPPAWHADFDMTVFALCAEEYVDEIPSSVGELR
FT                 KRQDWPKWEQAIQEELTSLAKNDTWRLVAPPDGARIVDNKWVFKVKKNGDG
FT                 TVERYKARLVARGFTQRAGFDFSETYSPVAKMATLRILLALANHEGWHLHQ
FT                 MDVKCAFLNGSLDEDIYMCQPLGFERRKDLVCKLNRSIYGLKQSSRNWNRR
FT                 FDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLIYVDDILIAGNDLKAIRAL
FT                 KGKLSTEFEMKDMEEAKIFLGLRIDRERKAGSMTIDQKAYTLGILKRFGME
FT                 NCKSSPVPMQPRLKLERGDPKELTDKPYKELVGCLMYLTVTSRPDICPAVN
FT                 YFASFQSSATEEHWVHLKRVLRNLQGTLDYKLVYQRTDSAVGVEAFADADW
FT                 GNDPTDRKSVSGFVLKLHGQTVNWSTRKQTSVALSSTEAELMSLCQASCEV
FT                 MWMLNLLASIEYEVPHPVTVYEDNQPCISVTADPRKLKRMKHIDVQYRFVK
FT                 ELIDNGKLRLEYLSTEEQVADLMTKGLAAPRFKKLREMLGIAN"
XX
SQ   Sequence 3426 BP; 863 A; 826 C; 1106 G; 631 T; 0 other;
     agaggttacg ggccccagcc ataacctaga aagttcggga aaaagttcgt gcaaaaagtt        60
     tggcggaaag tcgtgcgcga tgggcgaaaa agttgaaacc gtccggattc ggcagttcga       120
     tggcagcaac ttcagcaact ggagttaccg ggtcctccgg tacttgaaga cgttgggact       180
     gaggcactgc atcgagaagg cggccgagga ggaggacttc tggaacgttc cggaagggga       240
     cgcgcaagcg gcagccaagg aagttttgaa ggcacggcgg atgaaggagg acgaccggtg       300
     cgcgaacgcg ctcgtcgagt tggtcgcgga cagccacctt gagcacgtca agggaaagga       360
     gagtccgaag gaaatttggg acaggctgtg cgcagttttc gagcggaaaa gcaccacgaa       420
     ccggtacctg ctgaaaaagc agctcctgac gatgaagttc gacgagaagg aacccctgca       480
     ggaccacttt ttgaaattcg acaagctggt ccgggagctg aagggtgctg gtgcgaaaat       540
     ggacgaggag gacacgatct gccatctgat gctgacgatg ccggattcct acgacaccgt       600
     gacgacggcc atgagcgtca tgtcggacca actgacgatg gacgtcgtcc ggcggaacta       660
     tctggatttc gaggccaagc agaaaggaaa gcgtgcagaa caacaaacgg aagacgctgc       720
     ttttgcgggc cattcgaagc cgaagttcaa gtgtttttcc tgcggcggtg tcgggcacaa       780
     gaagaaccag tgtccgaagc ggaacgacaa gaagccggaa cagcggagga agccggagca       840
     caaggcgaac ctgggatcca atcccgtgtc gttcgtggcg gacgtgcaag aagtcgcggc       900
     gacgtctgtg gccccgtcac acccgtgacg tgggacggca atgcgtattt cgtaagtttc       960
     actgacgatt ttacgcatct ggccgttgtt tacctgctca agaccaagga cgaagtgctg      1020
     gagaagttcg tcgagtacga agcgatggcc acggcgtact tcggcaagcg gatttcacga      1080
     ctccggtgtg acaacggcgg agagtacact ggccatgcga tgcggagatt ctgcaagtcg      1140
     aaggggatcc agttggagac gacggttccg tacacgccgg aacaaaacgg atcgagcgag      1200
     cggctcaacc ggaccgtcgt ggagaaggtg cgggcaatac tcgcggccag cagacttccg      1260
     aggaatctgt ggggcgaagc tgtttacacg gcgatctacg tgctgaacag gagtcccagc      1320
     gtagcggttg aaggtgacgt cactccttac gaggcgtggc acggcaagaa accggacgtg      1380
     tcgatcctgc gggttttcgg cagcgactgc tacgcgcacg tgccgaagca acggcgtaag      1440
     aagctggatt cgaagacgga gaaagtgaag ttcatggggt acgggccgac tggatatcga      1500
     gtatggaacg gccagaagat cttcacagcg cgagatgttg tgttcaacga gctagtgttc      1560
     acaaaagaaa aagaagaaaa cagtgcaagt gaagagtggg tcgttgtgga gaaaagtgtc      1620
     gttcgccagg tggaaccagt gcggcaagtc gaaccggcgc ggccggtgga accagcgctg      1680
     ccagaagatt cggaggcgga gtccgagtac aacactggtg aagaaagtgc cgaagaagac      1740
     gaagtggttc ctgtcccggt actgacgcct gttggaccaa gtccgcaacg tgacactgaa      1800
     gggagagaaa agcgtacgat tgtgcccccg gcatggcatg ccgacttcga catgaccgtg      1860
     tttgcgctgt gtgctgaaga gtacgtcgac gagattcctt cgagcgtcgg tgagttgcgg      1920
     aagcgacagg attggccgaa gtgggagcaa gccattcagg aagagctcac ttcactggcg      1980
     aagaacgaca cgtggcgctt ggtggcgccc cctgacggag cgaggatcgt cgacaacaaa      2040
     tgggtgttca aagtcaagaa aaacggtgac ggaactgtgg agaggtacaa agcaaggctc      2100
     gtggcacgtg ggttcactca gcgggcgggc ttcgatttct ccgaaacgta ctcaccggtg      2160
     gcgaagatgg cgacgttgcg gatactcttg gccctggcga atcacgaagg ctggcatctc      2220
     caccaaatgg atgtcaagtg cgctttcctg aacggttcgc tggacgagga catctacatg      2280
     tgccagccgc ttggctttga gaggaggaag gaccttgttt gcaagctgaa cagatcaatc      2340
     tatggcttga agcaatcctc caggaactgg aaccgacgat tcgacgacta cgtgacgaag      2400
     ttggggttca agcggagcca acacgatttg tgcttgtacc actggaaggc ggatggtgtc      2460
     gtcacgtaca tgctgatcta cgtggatgac attttgatcg ccgggaacga cctgaaggcg      2520
     atccgggccc tgaagggtaa gctgtccacg gagttcgaga tgaaggatat ggaggaggcc      2580
     aagatctttc tcggactgcg gatcgatcgt gaaaggaagg cgggatcgat gaccatcgat      2640
     cagaaggcat acacgctggg cattctcaag cgattcggca tggaaaactg caagtcttct      2700
     ccagtgccga tgcaaccgcg cttgaagctc gagagaggtg atccgaagga actcaccgac      2760
     aagccgtaca aggaactggt cggttgcttg atgtacttga ccgtgacgtc tcgaccggat      2820
     atctgcccgg cggtcaacta cttcgccagt ttccaaagca gtgcaaccga ggagcactgg      2880
     gtccacttga agcgcgtact gcggaacctt caaggtacgc tggactacaa gctggtctac      2940
     cagcgaacgg attcggcggt cggagtcgaa gcttttgcgg acgctgattg gggaaacgac      3000
     cccaccgaca ggaagtccgt gtccgggttc gtgctcaagc tgcacgggca aaccgtgaac      3060
     tggtcgacgc gcaagcaaac ttctgtggcg ttgtcgtcga cggaagccga gctgatgtca      3120
     ctttgccaag caagctgcga ggtgatgtgg atgctgaacc tgctggcgtc catcgagtac      3180
     gaggtgcccc atccggtcac cgtctacgag gacaatcagc catgcatctc tgtcacggct      3240
     gatccacgca agctgaagag gatgaagcac atcgacgtcc agtatcggtt cgtgaaagag      3300
     ctgatcgaca acggtaagct gcgtctggag tacttatcaa cggaggagca agtcgccgat      3360
     ctcatgacaa agggattagc ggcaccacga ttcaagaagc tgagggagat gctaggaata      3420
     gcaaat                                                                 3426
//
ID   Copia-4_CQ-LTR repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   13-OCT-2011 (Rel. 16.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_CQ_;
KW   Copia-4_CQ-LTR; Copia-4_CQ-I.
XX
NM   Copia-4_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-160
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 324-324 (2011).
XX
RN   [3]
RP   1-160
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (13-OCT-2011).
XX
DR   [3] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 160 BP; 54 A; 45 C; 22 G; 39 T; 0 other;
     tgttgagtgt agaataaaag tgcaatttgc ctaaccctaa ttcacggtgt accggaactg        60
     ccacacctta cactccaaaa ccttgtctca cacaaacgtc agaataaaca ttccaatccg       120
     aactaccaaa cagcaaccac gcgttttatt actactgcta                             160
//
ID   Copia-4_DAn-I repbase;    DNA;    INV; 4158 BP.
XX
AC   AAPP01020546;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DAn_;
KW   Copia-4_DAn-LTR; Copia-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4158
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020546; Positions   27372   31529.
XX
CC   Positions [1535-2038] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1433..4060
FT                 /product="Copia-4_DAn-I_1p"
FT                 /translation="MLKREMGIQVKLESSFSEPCTLGKAHRLPFGTRKPAT
FT                 KPGELMSGDVCGPFEDSFQKKRYLVVFKDHFTRFRYGYIVKQKSEVKDVLR
FT                 HMVSHAKQQGHTIREFLSDNGGEFDCAGVRETLQEAGITFRLTAPYTPEQN
FT                 GGVEKENRTIVEMARTFKYSNPEIKFPEAIWAELVSTAVYVLNRTGKSSLE
FT                 GLSPYQLWLGKKRRIKHLRIVGSTSYVHIPCQKRKKMDEKAEKGYLVGYDG
FT                 DERYRIYLPEKHKVVVSRDVKFQEKFSNCEPGVNLPFQDFGSKDVVEDKEE
FT                 EDANLHKSEDEDTLQEQDLSKDTAETGSEDNYETGVETSFDEENNKRKMQS
FT                 MRLRDRSKLKRPEHMDDYVAAAENFVLESPDSFHEAINSNVEWKKAMDREI
FT                 YSLNQNETWSLTRLPRGSKALPCKWVYRVKTHPDGSIDKYKARLVIKGFAQ
FT                 RRGIDYDQTFSSVARMETIRSVLSVAAKNDMFLFQFDVSTAFLYGELDDKE
FT                 IYMQQPEGYEQGQGLVCRLKKSLYGLKQGPRCWQERFGGFLRKHNFKVSEA
FT                 DPCLYVRERNGKKILLVVYVDDGLAAATDTQDLEEFLDELKSEFKIVSSKA
FT                 ECFLGLEIKKQENGLKISQQGYATRILERFRFSDCKAVSTPLLKTLEITTT
FT                 GIESETSAFPYRQAIGALMYLMLGTRPDLAFSIGFLSRTLENPTKENIAQV
FT                 KRVFRYISGTINVGIVYRKQKKGILECYSDADFGGCTKTGRSTSGIIIMFA
FT                 SGAISWKSQRQAMVAISTTEAEIVAANEAAKEIIWLKRLFQEIDRLDRAPI
FT                 LQVDNTAAMRLAQNPEFHRRTKHIANKHFFIRERIAEGEFGIEQIPTEEQL
FT                 ADMITKPILNTRLRILCNKIGLF"
XX
SQ   Sequence 4158 BP; 1376 A; 837 C; 1003 G; 942 T; 0 other;
     ggaacgtttt gttcagttta aagtaaaaga aaaaaggtaa ttttactcga ttacgatgga        60
     tttggcgaag cacgttacga agctctcagg cgcgaccgat tggccgattt ggaaaagaaa       120
     aataagggac ctgatacatt atcacgacgg tgctctcgac gcgttggacg gaaagatcgt       180
     caaaccggat ccattgccag aaggtgcctc aacagcagat aaaaagaagc acaaggagaa       240
     gagcgatttt tttcgtaagg ccaacagcta tgcaaaatcc atgattacca ctgcggtcac       300
     ggactcggtg taccagaaga tcatggacaa ggagacagca cacgatacgt gggaagccct       360
     gaaaaatcag tttgaagcaa cagcgaagga ccaggtattc aggatatgca acgagttttt       420
     cgctttctct tggaatccag gtaacgatgt atcaacccac atagcaaaat tgcgtagtct       480
     aagtcgattt aaatcaagct ttaaaggcca aaaatgaaac tgagctgcca gatttaatac       540
     ttgtttgtaa aacgctacat attttgccaa aaacctttga aacgttccgt caaagttaga       600
     tgctcttgac aaaagaagaa gaaaagactt tcgacgaatt aactaatcaa attgtcatgt       660
     ttgagagaaa ttttagaaca aaagaaatga cgaaaaggaa agtcaggagg ctttttctac       720
     cacagcaaaa aaggagcatc atcaggattc aggagcatct ggtcggagat tcgatacctg       780
     ccgctattgc aagaaaaagg ggcactgggt gaggaactgc ataaaatgga agaaggatgg       840
     acgtccgaag ccaagctacc agaatgctga acaaggaaat tgtgcagaac caacggtaac       900
     tctcgtctca gtccacaatg gcgtgtttgc agcagaggca aactcagggg acgactggtg       960
     gatagacaac ggtgcaacaa aacacgttgt gaagactgcg aagtatttcg agcattttga      1020
     gaagtttgag aatccgagtt ggatcagagc agctggaaat gaaaccttgt aagctttggg      1080
     ccagggcaca atcaaagtca aaacgattgt caatgaaaaa attctttttc tttctttgaa      1140
     aaatgtatgg tttgttccca atataacgaa gaatctgttt tcagttttgg ctgcccaaga      1200
     caataatcca agtagtcgtt tcgagtcgtc agcaaccgag tgcaccctca aaataaacga      1260
     caagattgtc ctcgttggag ccagaaaagt tggaggaaca ctctacagag cagcgatcga      1320
     gcccatactt ccagaacgaa acgtcgaagt caacgtcgca acttcagaaa cttcaattct      1380
     ccaactctac cacgagagat ggggacatca ggacaagaac cacatcaagg acatgctcaa      1440
     aagagaaatg ggcattcaag tcaagcttga gagtagcttt tccgagcctt gcacccttgg      1500
     aaaggcgcat cgattgccat ttggaacgag gaaaccagcg acgaagccag gagaattgat      1560
     gtcaggtgat gtttgcggcc catttgagga ttctttccag aagaagaggt atttggtagt      1620
     ttttaaggat catttcacca ggtttcgata tgggtacatt gtcaagcaga aatcagaggt      1680
     caaggacgtg ctacgacaca tggtttctca tgccaagcaa caagggcaca caattcgaga      1740
     attcctgagc gacaacggag gagaattcga ctgtgcagga gtgagagaaa ctcttcagga      1800
     agctggtata acttttcgac tcaccgctcc gtatactcca gaacaaaacg gtggtgtcga      1860
     gaaagagaat cgaacgatag tcgaaatggc gagaactttc aagtattcta atccagaaat      1920
     aaaatttcca gaagcaattt gggccgagtt ggtcagcaca gcagtatacg ttctcaatag      1980
     gacgggcaaa tcttcgttgg agggtctgag cccttaccaa ctttggctgg gcaagaaacg      2040
     aagaatcaaa catcttcgaa tcgtaggatc gacgtcctat gtacacattc catgccaaaa      2100
     aaggaagaag atggacgaaa aagctgaaaa ggggtacctg gtgggttacg acggcgatga      2160
     gaggtatcgt atttacttac cagagaagca caaagtagtc gtgtcgaggg atgtaaaatt      2220
     tcaagagaaa ttcagcaact gtgaaccagg cgtcaaccta cctttccaag attttggatc      2280
     caaggacgtc gtagaagaca aggaagaaga agacgcgaat ttgcacaaga gcgaggacga      2340
     agacacactc caggagcaag acttgagtaa agacacagct gaaacaggaa gcgaagacaa      2400
     ttacgaaacc ggagtcgaaa caagctttga cgaagaaaac aacaagagaa aaatgcaatc      2460
     aatgcggttg agggatcgtt cgaagttgaa gagaccggag catatggatg actacgtagc      2520
     agcagccgag aattttgtgc tggagagtcc agattccttc catgaagcca tcaacagcaa      2580
     cgtcgagtgg aaaaaggcaa tggacaggga aatttattct ttaaatcaga atgaaacttg      2640
     gagcttgaca agactcccaa gaggatcgaa agcacttccg tgcaagtggg tctatcgagt      2700
     caaaacccac cccgacggaa gtatcgacaa atacaaagct cgcttggtca tcaaaggatt      2760
     cgcccagaga cgagggattg attacgacca aacttttagc tctgtcgcaa gaatggaaac      2820
     aatccgctca gtgttgagcg ttgcagccaa aaatgatatg tttttgttcc agtttgacgt      2880
     ctcaacagct tttctttacg gtgaattgga cgacaaggaa atctacatgc aacaacctga      2940
     gggatacgag caaggacagg ggcttgtttg cagattgaag aagagtctct acgggcttaa      3000
     gcaagggccg agatgttggc aagaacgctt cggaggtttc ctgcggaaac acaatttcaa      3060
     agtcagcgag gcagatccat gtctctacgt cagggaaaga aatggcaaaa agattctact      3120
     cgttgtttac gtagatgacg gactcgccgc agcaacagac acgcaagatt tggaagaatt      3180
     tttggacgag ttaaaatcag agttcaaaat tgtctcaagc aaggctgagt gcttcttggg      3240
     actcgaaatc aagaaacaag aaaatggact aaaaattagt caacaaggat atgccacaag      3300
     gattttggag cgattcagat tctcggattg caaagctgtt tcaaccccac ttctcaagac      3360
     tttggaaatt acgacaacag ggatagaatc agagacgtct gcgttccctt atcgccaagc      3420
     tatcggagcc ctcatgtacc tcatgcttgg aactaggcca gacttggctt tcagcatcgg      3480
     atttctttca agaacgcttg aaaatcctac aaaagaaaac attgcacaag ttaagagggt      3540
     tttccgttac atttccggaa caatcaatgt tgggatagtc tatcggaaac agaagaaagg      3600
     aatcctcgaa tgctacagcg atgctgactt tggtggctgc acgaagactg ggagatctac      3660
     atcagggatc atcatcatgt ttgcctcagg agcaatttca tggaaaagtc aaaggcaggc      3720
     catggtggcc atttctacta cagaggccga gatcgtagca gccaatgaag ctgcaaaaga      3780
     aataatttgg cttaaaagat tgtttcagga aatcgacaga ttggaccgag ccccgattct      3840
     ccaggtcgat aacactgctg ccatgagact ggcccaaaac ccggaatttc atcgcaggac      3900
     taagcacata gccaacaagc atttcttcat cagggaaaga attgctgagg gagaattcgg      3960
     aattgaacaa atcccgactg aagaacaact cgcagacatg ataacaaagc cgattctcaa      4020
     tactcgtctc cggattcttt gcaacaagat tggactcttc tgaaggagaa aagcaccatt      4080
     tattttgttt tatatagagt cataaaattt tctagtctgt caattgaatt gttatttttg      4140
     aattctcaca agggaaag                                                    4158
//
ID   Copia-4_DAn-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   AAPP01020546;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DAn_;
KW   Copia-4_DAn-LTR; Copia-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-237
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020546; Positions   27135   27371.
XX
SQ   Sequence 237 BP; 98 A; 31 C; 37 G; 71 T; 0 other;
     tgttaaagat aaatgtttca aattcaaaaa tacccgccaa gtaagagggc gcttataata        60
     taatatcata tcgataactt ttaaattcat atcgattgta tcgaatcaaa actaaagata       120
     taacctaaaa agctgtcaaa gagagttaat aaacacgagg ttgtttttca ataaatatgg       180
     tttatttact ggcctaaata actaaagaag gaaaagttat aataggttat gggccca          237
//
ID   Copia-4_DEl-I repbase;    DNA;    INV; 4389 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DEl-I;
KW   Copia-4_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4389
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7027-7027 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 4389 BP; 1607 A; 581 C; 893 G; 1302 T; 6 other;
     ggttatgggc ccaggctacg cctattataa ttagatccgt gaaatttttt ttgctttgtg        60
     aaattacttt ggtttgcgcc acgttgtgaa attcttgtga aattgtagaa ttctgtgtta       120
     cttacacaca tacatacata catatagctg tatgtgcgtt tgcgaaaagt agtatggaaa       180
     aagcaaaacg caacattaag cctttcgacg gcgaaaagta ctcggtgtgg aaattcagaa       240
     taagagccct tttcgcagaa ttagatgtct taaaagtgat tgatgagaat attcctgata       300
     actcgacgtt cctggaaaaa ggcagagctt gtgaaagagc actttgatag aatatcttag       360
     tgactctttt ctcaactttg cgasaagcga cggcacggcg cgacaaattc ccatcttact       420
     ttggcttttg taaagaacag attgctcgat cacgagataa aaattaaaaa cgatagcagg       480
     atacaaggga aagttatgaa agcactatgt ataatataaa caattataag aataaatcgt       540
     ttaaaaatac taatgcgttt aaaaataata atactttaat tcgcaagcca ttcaatgcaa       600
     aaggaaagtt taacattaag tgccatcact gtggcaaaga agggcacatg aaaaaggatt       660
     gttatgcgta taaaagaata ataaacgata gaaataaaga aaataacaaa caagcacaaa       720
     cagcaacaac ccaacccggc ttcgcgttta tgttaaatcg tttaaataaa aacatgtcca       780
     aaactggcga tgaaaaagtg aaatttatac tggactctgg tgctacagac ctcgatgacg       840
     agaaactctt tgctgattcg acctggggtt gcaagtaaaa atagttgtcg caagcatggc       900
     gaatttattt ttgcagcgaa ggtggcattg tcagactgca caacggaaat caaatcacgc       960
     ttgaggatgt gctttattgc caggaggttg cagaaaactt aatttctgtc aagcgactgc      1020
     aggaggctgg tatgactgtt atagccwaga atggctttgt tgtwgctgag aattcaggta      1080
     cgttcaatac accaattctt gaatttaagg cctatacatt aaatgtgaaa actaatgaat      1140
     atcgtttatg gcatgagaga ttaggtcaca ttagtaaagg aaaattgcta gaaattaaaa      1200
     gaaataattt atttagtgac aataatcttt tagataatgt ttatccaatt gatgagatat      1260
     gtgaagcatg cttaaatggt aaacaagcca ggttgcgttt tgaaaaaaat aaaaaataaa      1320
     gaatacataa atagacccct atttgtaatc cactctgatg tatgcgggcc aataacacct      1380
     gtttcaattg acgacaaaaa tttgtagatc aatatacaca ttattgtgta acgtatttaa      1440
     tgaaatacaa atcagatgtt tttgcaatgt ttaaggattt tgtagcaaaa agtgaggcgc      1500
     atttcaacct taaagtcgtt aatctatata tagacaatgg tagggaatat ttgtccagcg      1560
     atatgcgtga atattgtgta cagaaaggga taagttacca tttgactgtc ccatatacac      1620
     cgcaattaaa cggtgtatca gagagaatga tcagaacgat cactgaaaaa gctcgtagta      1680
     tggtatgtgg tgctaaatta gataaaagct actggggtga agctgttctg acagcaacct      1740
     atttaattaa caggattccg actagggcac ttgatgatag tacaaaaact ccatatgaag      1800
     catggcacaa taaaaaacct gatttaaaat atttgaaaat atttggttct acagtgtatg      1860
     ttcatattaa aaacaggaaa agaaaatttg atgaaaaatc atgtaaaact attttagttg      1920
     gttatgaacc aaatggttta aaactatggg acttagctaa tgagagattt attgtcgcaa      1980
     gagacgtaat tgtagacgaa acaaatatga ttaattcaag agctgtgaaa agtggattgg      2040
     aattcctgaa tgagagtaag gaaagtgatt taattgatat cctgaatgag agtaaggagt      2100
     atgataatgt taatatcctg aatgagagta aggagagtga taatattaat atcctgaatg      2160
     agagtaagga gtgtgataaa gttaatatcc cgaatgagag taaggagaat gatamcgttw      2220
     gtatcctgaa tgagagtaag gagtgtgata atgttaatat cctgaatgag agtaaggagt      2280
     atgataatgt taatatcctg aatgagagta aggagtgtga taatgttaat atcccgaatg      2340
     agagtaaggg ataatggtac cgtttgttac atgaatgaga gtaaggagaa agataatatg      2400
     aaaatcctga atgagagtaa ggaaaatgat aaaataaatt tccagaatga cagtatggag      2460
     aaaagatttg actcaaaaca gctcagtgaa aatattgaac gtatttctag aagaagtgat      2520
     aggctaaaga acaggcaaca aatatcatac aaggaagatg aaatagatta caataactat      2580
     attttaaatg ctcatacaat ctttagtgat gttccaagtt cctttgaaga aatacaaagt      2640
     aggagtgaca aatctttatg ggagtctgct attaaaaccg aattggatgc ccatgaattt      2700
     aataatacct ggtcaattgt taagcggcct gaaaatataa atattgttga tagcaaatgg      2760
     gtttttactt taaagtccga cgaatttgga aatccaataa gacacaaagc tagattagtg      2820
     gcgcgtggat tcacgcagaa gtatcttgta gattatgaag aaacatttgc tcctgtggct      2880
     agaatagcca gttttcgctt cttattatct atttcaattc aatatgattt aaaaatacat      2940
     cacatggatg taaaaagtgc ttttctaaat ggaaaattaa aagaagaaat ctatatgaaa      3000
     gtgcctcaag gtgtattgtg tagtgcaaat agtgtatgta aattgaataa agcaatttat      3060
     ggtctcaaac aagcagcaag atgttggttt gaggtatttg agcaagcact aaaggagtgt      3120
     ggtttcgtaa attcaccggt agatcgatgt atttatgtcc ttgataaggg tgacgtaaga      3180
     aagaacatat acttacttct ttatgtagat gatttagtta tttgcacagc agatatagaa      3240
     aagatgaaat gtttcaaatc atatttaatg aacaagttca gaatgacgga cttggaagaa      3300
     attcgacatt ttattggaat aagaatagaa atcaaagatg gaaaaatatt tttaagtcaa      3360
     gctgcttaca ttaaaaagat tttgaataag ttcaaaatga gtgattgtaa atcagtcagt      3420
     actccactag caagcaagct taattatgaa ttattaaatt ctgatgaatg gtgtgatgcg      3480
     ccttgtagga atttagtcgg atgtcttatg tatgtaatgt tatgtacacg tccagacttg      3540
     gccactgctg ttaatatttt aagtcgatat atgaataaaa ataatgcaga attatggtta      3600
     tgtttaaaaa ggattcttag atatttaaaa gggaatatag atataaaatt ggaatttaaa      3660
     aggaatacaa gttttgaaaa tatattgtcg ggtacgcaga ctctgattgg gaggcaatga      3720
     aattgatagg aaaagtacaa ccgggtttct attcaaaatg tttaaccaaa atcttatctg      3780
     ttggaatacg aaaaggcaaa actcagtagc tgcttcgtcg actgaagctg aatacatggc      3840
     cttgttcgaa gctgtaagag aagccttgtg gttgaagtct ttattagaaa gtgttcatat      3900
     aaaatttgaa agacctataa aaatatatga agacaatcag ggatgtatta gtatagctaa      3960
     taatccctcc tgccataaaa gatccaaaca tattgatatt aagtatcatt ttgctagaga      4020
     gcaagttgaa aataacaata tttgtattga gtatatttcc acagaaaacc agcttgcaga      4080
     catctttacc aagccgttgc cagcmgcaag attcaatgaa ctgtgtagca agattggact      4140
     acaagaagac aagaaggctg attgatctat tggaatttaa tataaaaaga ctatgaaatt      4200
     taaaatgtta taataagaat tatgttaagt aatgatctga tcgggtttta ctgggttttc      4260
     ccgaatcctt gcagcgaatg ctggatcatt tttgtactcc ccagaaatga acacacacca      4320
     cattaggata tacttattgt tattgtaact aatgaaatat ttttctttaa tgttattttt      4380
     gagggggcg                                                              4389
//
ID   Copia-4_DEl-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7053-7053 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 233 BP; 67 A; 36 C; 32 G; 98 T; 0 other;
     tgttgaatat cccatattca aaaataacat ttagtatctt ttaagttata agatctggta        60
     tctctaaacg gtatttttga ctttgtaata gtctggtctc atttcaatat cctctctctc       120
     tttttctgcg gtgttgctcg gaagtggttg tgtttgaaaa gaataaaata ataaatcaaa       180
     atatatccta tcaatccttt gcctttcgtt agtttttatt caagttttca ata              233
//
ID   Copia-4_DGri-I repbase;    DNA;    INV; 4120 BP.
XX
AC   scaffold_5173;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DGri_;
KW   Copia-4_DGri-LTR; Copia-4_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-4120
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_5173; Positions    5431    1312.
XX
CC   Positions [1528-2061] - Integrase core
CC   'TGAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..4110
FT                 /product="Copia-4_DGri-I_1p"
FT                 /translation="MSALYNIDKLDETNYDSWCVQMKSVLIHQELWSVTSG
FT                 AMKCPSSDKTSEYSQWLSKNEKALAVITLSIRGSEVGHIKKCESASSAWII
FT                 LKAVHQPTGPVRKVTLFKRLLFMRMNENENMQIYIANFVNTVEQLTEIGIV
FT                 LQEEIYVILLLASLPKSYENLVVALESRDELPKFSTLKVKLIEECDRRKSE
FT                 AQRESVNENNAQAFLSKAHYPKESAKKTDKVGKNRNKKIKCYNCGKIGHIS
FT                 AECRSKANEGHAKGRDEKSFFTLLSAKNGERLLDKSAWCLDSGATSHMCAN
FT                 QNMFNSFEQFTDTVTLAGEKSLEVVGRGVVMIKTESSTVKLTNVLYVPQLQ
FT                 CNFISVSRAVKGGCTVNFKNNRACVCDENGKTLIIANHRSNLFLCEITKTI
FT                 NTVFLSENGKSGSEDIIKWHKRYGHLNMQSLKELNNMKLVRGVNFNSTSEF
FT                 DCKICLQSKCSAKPFNMSVSKSEDVLNLIHSDVCGPINICSNGGSRYFVTM
FT                 IDDKSRYVHVYFIKNKSEVLNVFKNYKNMVECQTGKRIKVLRSDNGREYVN
FT                 NEFDIFLKQNGIVRQLSVPHTPQQNGVAERMNRTLVEMARCMLLEAKLKES
FT                 FWAEAVHTAAYLRNRSPTKAVLQSTPYELWTGRKPSVGHLRTFGCLAIALD
FT                 KTQNRKFRPKGIEYILVGYADQAKAYRLYNSASGKMIESRDVYFVESTTES
FT                 SAVDIPMLPDFNCSKVITEVQSNRSSSRGSSRASSRASSRASSRGSSKGTG
FT                 EDNGNTDINKSEISKKSNRLERTSGHGWRRPDQMHKLNLVSSDAVVTPETV
FT                 EEALESPQAIEWQKAMAQEFGALKVNGTWEPAELPSNHKAIGCRWVFALKR
FT                 DKNGTIERYKARLVAKGCSQKQGVNYDETFSPVVRYATIRMVLAIAAELVL
FT                 HVHQLDVSTAYLNGELQEDVFMKQPRMFEEQGVSVLKLRKSLYGLKQSGRM
FT                 WNKKLNEMMTKIGFSACPSELCVYTRHTQNNINIIAVYVDDMMICSSDIGE
FT                 LASIKESISRIFQVVDKGPIHHFLGMEINRKGIIGAITITQQQHVLQLLKK
FT                 FGMEACRPASVPLASGYTTKCESQQCKTVNQAEYQSLIGSLMYLAVTSRPD
FT                 ILHSVCKLSQRNTDPHQEHWAAAKQVLRYLRTTSSMGITYAKTGNPIKGYV
FT                 DADWGGDNTDRKSYTGYVFILGGSAFSWESKKQSSVALSSTEAEYMGMSEA
FT                 TKEAVYILKLCNEMNIYRNMKSIVIHGDNLSAMNLVKNPVYHARSKHIDIR
FT                 YHFVREVFNKLMIQLEYCPTSQMMADILTRNLSKLKHENCNRLLGLKLIVN
FT                 NVY"
XX
SQ   Sequence 4120 BP; 1414 A; 724 C; 989 G; 993 T; 0 other;
     ggttatgggc ccaggcataa aagaaaaagt tgaatgaaac taaggttatg ctgaaaagcc        60
     gcgtttaagg tcgagtgaca ttttttcatt agaattgcat aattttgtat tgctgtgtgc       120
     tttaccaact aaagttttct gtgtgagaac aagtacgagc gaaaaatgag tgcgctgtac       180
     aatatagaca agttggacga aacaaattat gattcgtggt gtgtccaaat gaaaagtgtg       240
     ctaattcacc aagagctatg gtccgtcact tcgggagcta tgaaatgccc aagctcagac       300
     aagacgagtg aatatagtca gtggttatca aaaaacgaaa aggctttagc ggtgattact       360
     ctctcaataa gaggctctga ggttggtcac attaagaaat gtgaatcggc gtcgagtgcg       420
     tggataattc taaaggcagt gcatcagccc accggtccag tgagaaaagt cacattgttc       480
     aagagattac tcttcatgcg gatgaacgag aatgagaaca tgcaaatata tattgcaaat       540
     tttgtgaaca ccgtggagca gttaacagaa attggcattg ttctgcaaga ggaaatatat       600
     gttattttac tcttggcaag tctacctaaa tcatatgaaa atttggttgt agcattggaa       660
     tcacgtgatg aattaccaaa gtttagtact ttgaaggtta aattgatcga agagtgtgat       720
     agacgcaaga gcgaagcaca aagagagagt gtgaacgaaa ataatgcaca ggcattttta       780
     agcaaagcac attaccctaa agagagtgca aaaaagacag acaaagtagg caagaaccga       840
     aacaaaaaaa tcaagtgtta taattgcggt aaaattggcc acatttctgc agaatgtagg       900
     tccaaggcga acgaaggtca tgcaaaagga agagacgaaa aatcattctt cacgttgcta       960
     agtgcaaaaa acggtgaacg attgcttgat aagtcagcgt ggtgcttaga tagtggcgcc      1020
     acatctcata tgtgcgcaaa tcaaaatatg tttaattcgt ttgaacaatt cactgataca      1080
     gtcacacttg ctggtgaaaa atcactagaa gtagtcggac gaggagtcgt catgattaaa      1140
     acggaatcgt caacagtaaa acttacaaac gttctttatg tgccacagtt acaatgcaat      1200
     tttatttcgg tgagcagagc agtaaaagga ggctgcactg taaattttaa aaacaatcgt      1260
     gcgtgcgtat gtgacgaaaa cggtaaaact ctgattattg cgaatcatag aagcaattta      1320
     tttctgtgtg aaataacaaa aacaataaat acagtgttcc taagtgaaaa tggcaaaagt      1380
     ggcagtgagg acattataaa atggcataag agatatggac atctgaacat gcaaagcctc      1440
     aaagagttaa ataatatgaa attggtgcgt ggagtgaact tcaacagcac aagcgaattt      1500
     gactgtaaga tatgcctaca gagtaagtgt tccgcgaagc catttaatat gtcggtcagc      1560
     aaaagtgagg acgtgctaaa cctcatacat agtgatgttt gcggccctat aaacatatgt      1620
     tcaaacggag gatcacgtta ctttgttaca atgattgatg ataaatcgcg atatgttcac      1680
     gtatatttta tcaaaaataa atcagaagtt ctaaatgtgt ttaagaacta taagaacatg      1740
     gtggaatgcc aaacgggaaa acggatcaaa gtactccgca gtgacaatgg tagagaatat      1800
     gtaaacaacg agtttgacat atttctgaaa caaaatggga tcgtccgtca attgagtgtg      1860
     cctcacacac cccagcaaaa tggagttgca gaaaggatga atcgtaccct cgtggagatg      1920
     gcgcgatgta tgctgctaga ggccaaactt aaagaaagtt tctgggcaga agctgtacat      1980
     acggcagctt atctacggaa tagatctcct acaaaagctg tgctccagag tacgccatat      2040
     gagttatgga cagggcgaaa gccatcagtt ggccaccttc gtacatttgg gtgcttggcg      2100
     atagcgttgg acaagacaca gaatcggaaa tttagaccga agggtataga atacatactg      2160
     gttggatatg cagatcaagc taaagcatat cggctctaca acagcgccag tggtaaaatg      2220
     atcgaaagcc gtgatgtata ttttgttgag tcaacaacag aatcaagtgc agttgatata      2280
     cccatgttac ccgattttaa ttgcagcaag gtaattacag aagtgcagtc caatagaagc      2340
     agcagcagag gcagcagcag agccagcagc agagccagca gcagagccag cagcagaggc      2400
     agcagcaaag gcaccggcga agataacggt aacaccgata tcaataaaag tgaaatcagc      2460
     aagaaaagta accgacttga aagaacaagt gggcacggat ggcgaagacc agaccagatg      2520
     cacaagctga atcttgtgag cagtgatgcc gtcgtaacac cagaaactgt ggaagaagca      2580
     ttggaaagtc cacaggcgat cgaatggcaa aaggccatgg cacaagaatt cggagcactg      2640
     aaagtgaatg gaacttggga accagccgaa ttaccatcca atcataaggc gattggatgc      2700
     agatgggtct ttgcactaaa acgtgacaaa aatggcacca tagaacgata caaggctagg      2760
     ctagtagcaa agggctgcag ccagaaacaa ggagtgaact acgatgaaac gttttcgcca      2820
     gtagtgcgat atgcgacaat aaggatggtg ttggccatag cagctgaact ggtgctacat      2880
     gtacaccaac ttgatgtatc cacggcatat ctaaatggag aattgcagga ggatgttttc      2940
     atgaagcaac cccgtatgtt tgaagaacaa ggagtgtctg ttcttaaact tcgaaagtcc      3000
     ttatatgggc taaaacagtc tggacggatg tggaacaaaa agctgaacga gatgatgaca      3060
     aaaattgggt tttcagcctg tccaagcgag ctgtgtgtat atactaggca tacacaaaac      3120
     aatataaaca taattgcagt atatgtggat gatatgatga tatgttcatc agatattggt      3180
     gagttggcca gtataaaaga aagtatatct cgaattttcc aggtggtcga caagggccct      3240
     atacatcatt tccttggtat ggaaatcaat aggaagggca taataggggc gataacgatc      3300
     acccagcagc agcatgtgtt gcagctgctt aagaagtttg gcatggaagc gtgtcggcca      3360
     gcatcagtac cgttggcgtc cgggtacacc accaaatgtg agagccaaca atgcaagacg      3420
     gtcaatcagg cagagtacca gtcactgatc ggatcattaa tgtatctggc agttacatcc      3480
     agacctgaca ttttacattc agtatgtaag ctgtctcaac ggaatacgga tccccaccaa      3540
     gagcactggg cagcagcaaa acaagtgctg cgatatctga ggacgacgtc ttcaatgggc      3600
     ataacatatg ctaaaactgg aaatcccatc aaaggctacg ttgatgcgga ctggggtgga      3660
     gataacacgg accgaaagtc gtacactgga tacgtattca ttcttggcgg tagcgcattc      3720
     tcctgggaaa gcaagaagca gtcgtcagta gcactaagta gtactgaagc cgaatatatg      3780
     ggaatgtcgg aagcaactaa agaagctgtt tatattctga aattatgtaa cgaaatgaac      3840
     atatacagaa atatgaaaag tattgtaatt catggcgata atttgagcgc tatgaactta      3900
     gttaaaaatc cagtttacca tgcaagaagc aagcatatag atattcgtta tcacttcgtg      3960
     cgagaagttt ttaataagct tatgattcag ctggaatatt gtccaacgag tcaaatgatg      4020
     gcagatatct taactaggaa tttgagcaag ttaaaacatg aaaattgtaa tagattgctt      4080
     ggtctcaaat taattgtcaa taatgtgtat tgagggggag                            4120
//
ID   Copia-4_DGri-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   scaffold_5173;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DGri_;
KW   Copia-4_DGri-I; Copia-4_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-168
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_5173; Positions    1311    1144.
XX
SQ   Sequence 168 BP; 62 A; 34 C; 19 G; 53 T; 0 other;
     tgttgaaaat atgtaaaaga tcaatacaac attccgatta ctaatgttaa taacagaaca        60
     tatcgatact gcgctcgata ccttaattta agattacatt gaataaattc ttcttagtct       120
     aaccgccaaa cctagtgcat cactttttgc cgctttaaaa atccaaca                    168
//
ID   Copia-4_DMel-I repbase;    DNA;    INV; 3068 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3068
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 735-735 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..698
FT                 /product="Copia-4_DMel-I_1p"
FT                 /translation="MNSLYQIEKLDEKNYESWNIQIRSVLVHSGLWSVTSG
FT                 ELKQESVPEGVDWQGLDQKALATLILSVKTSQLGYIKHCVHSFEAWIKLRD
FT                 VHQPKGPVRKVALYKKLLGLRMADGQSMSSHINDFVGILDQLAAIGIAVDD
FT                 ELRGILLLSSLPKGXEYFVVAIETRDTLPDFESLCIRVESRRRKKRQEEHR
FT                 RTSIDCYYESATKQR"
XX
SQ   Sequence 3068 BP; 979 A; 533 C; 826 G; 725 T; 5 other;
     ggttatgggc ccagaaacgt tctggtgcgt atataagtaa acgtttttga aacgtgcggc        60
     tccggagatt aataaatagc aagatgaatt cgttgtatca gattgagaaa ctggacgaaa       120
     agaattatga atcatggaac atccaaatta gaagtgttct agtgcattct gggctatgga       180
     gtgttacatc aggggagctg aaacaggaat ctgtgccaga aggtgtggat tggcaaggct       240
     tggatcagaa ggctttggcg actctaatat tgagcgtgaa aacctcacaa ttgggttata       300
     ttaaacactg tgtgcattct tttgaggcgt ggataaagtt aagggacgta catcagccaa       360
     agggaccggt gcgcaaggta gcgctgtaca agaagctatt gggtctcagg atggcagatg       420
     gtcagagcat gtccagccac ataaatgatt tcgtcggaat tttggatcag ttggcagcta       480
     taggaatagc ggtagatgat gagctacgag gaattttatt gctttccagc ctgccgaaag       540
     gcstcgaata ttttgttgtc gccattgaga cgcgcgacac tttgccggac ttcgagagtc       600
     tttgcataag ggttgaaagt agaaggcgaa agaagaggca agaagaacat aggcgcacaa       660
     gcattgattg ctattacgag tcagcaacga aacaacggta aaagagataa accaaaaacg       720
     aaattctata aatgcggcaa aaaattttaa aacggaagga tgaggtattc gaaaagtttg       780
     ttgaattcaa aaagatagca gagcgacaaa caggaaaaat gttgaagtcc attcggagtg       840
     acaacggcac cgagtacgta aacaaggcat ttaatcgatt cctgaaaaca aatggaataa       900
     tacggcagct gacgacggca tatactccac aacaaaatga agttgcagag cgcgctaatc       960
     ggacattggt tgagatgaga gatctggtgc agtctgcaaa catgacacct atgaaagctt      1020
     ggtcatctaa aagtctttgg ttcaattgca gwggcgctag acaagggcaa actgaaaggc      1080
     aaatttgaac agaaaggaac agaataccgt atggttggta tttaaggaca gccaaagcgt      1140
     atcggctgta tgactctgag aagcggagtg tgattgagaa gagagatgtc cttttcaacg      1200
     agagtgacaa tgtgtctcgg caagctaatg ctgagatggt ggtctccgac tggcagttgg      1260
     gtgaaagtca aaatgagtcg acaattagca caggccgtgt taatgcagaa tctaggggaa      1320
     gctgagaaca tcgtawacga cggtgatgtg gacagggacg agaatgacca gattgacaga      1380
     gcttccaagg attcagttga tgagagtgca gagggagtmg tgccaaatcc taaagctgta      1440
     cgggtgggac ccggtaggcc gaaactaata cacacgggca aacctggacg accaaaaaag      1500
     cagtacaatt tacatggtgc tatggttgca agaggcgtac gcagaggcaa taaattgcga      1560
     gtatgcctct caatggcgtg aggcgatgca gcgtgaatat gatgctctag tatctaacaa      1620
     gatsgcagat cgcagaatta ccgaataccc ataagacgat tggatgctag tgggtatact      1680
     gtgtgaagcg tgatgctaaa ggcaaggttg ttcacaacgg tatggtgtga actacaagga      1740
     gacgttctcg ccggtgtgca gattggagag catacgactt gttttggcga tggcatcgga      1800
     attaaatctc tatgtacacc aaatggatgt atgcacggca tacctaaaca gcgacttatc      1860
     agaaactgta tatatgcaac aaccggaggg agatacagta ggcagcaaac ctggacaagt      1920
     attgttatta aagaaggcta tatatggatg gattgaagca atctggaagg gaatggaaca      1980
     ataaactgga caatgtgttg cggtcaattg gttttgatcc aatgagcaat gagccctgtc      2040
     tatataaaat gagtggcaaa ggtaataaca ttggtaataa taacattggt ttatgttgac      2100
     gatttcatta tagcatgcca gaacaaataa gacctcgtta acataaaatc atcgatttca      2160
     agagtgcgtt tgagtgtgtc gataaaggcc cgttaaagct atttatgggc atggatatag      2220
     aacgtgatgg agaacttggc gagatcacgt tggggcaaac tcaatatatt caagacctat      2280
     tgcggaaaca ttgcatcact gagtgtcgac ctgcagcaac gccgttagat acagcatacc      2340
     aagtggcatg tgatgggcaa tgtacaaagg tagacgagac ggcatatcag tcagttattg      2400
     gagagctgat gtggttggca ttgacgagta gatccgatat tttgcactcg gtggcaaaat      2460
     tggcacagcg gaacaaggat ccgcatagcg agcacatggc tggggtcaaa caagttttga      2520
     gatatctttc agtgaactac acgctacact acaagaagtg tgggcaggcg ttggttggct      2580
     acgttgacgc tgactcgggc ggagataaga tcgaccccaa atcctacaca ggctatgttt      2640
     tcttcacggc tggtggtccg atatcatgga aatcggaaaa aacagaacag cgtagcgctc      2700
     agcagtaccg aggcagagta catggcattg tcaacggcgt gtaaagaggc aattgctatg      2760
     agacggctca tgattgaact tggctgcggt gacgtcgaga ctccaaccgt tgcttacggc      2820
     gataacttga gcgcgcaaca attggcaaag aaccctgtac atcatgcaag gaccaagcat      2880
     gtggatatac gttatcattt tgttcgggag attgtggatc aaggtcaaat tgttgtaaag      2940
     tatgcctcaa cagaaataat gatagcagat atactaacaa acaatttgca taagaaaaaa      3000
     catgaaggtt ttgtaaaatt gttaaatatg aactaacaat tgtaggatgc tcgcattgag      3060
     ggagggtg                                                               3068
//
ID   Copia-4_DMel-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-190
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 725-725 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 190 BP; 70 A; 32 C; 31 G; 57 T; 0 other;
     ttaaaaatca accctagttc gatatgtcgt taaattgcga ctctggtatg aactgcaatg        60
     cacgcatctt atacatacat atatttaagt cctgtatgtc tgtgcagtag tataaataga       120
     agtgtaagaa gacaagaaga tgttcagtca caaataaact ttcatagtgc tcacatgtaa       180
     ataatcaaca                                                              190
//
ID   Copia-4_DMo-I repbase;    DNA;    INV; 4078 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4078
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           134..4027
FT                 /product="Copia-4_DMo-I_1p"
FT                 /translation="MNMSYQIEKLDENNYGVWHMAMESVLEMADLWEVVCG
FT                 KYEGQDDAAAAKWYKDDKKARAYITLNVKPSQLMHIKRCTTAEEIWRKLKE
FT                 LHMPVGPIQKVQAYQKLIRLSMQQGDDIVTYINSFVEIIDKLAELDITLND
FT                 ELKVIMLLSSLPDTWESFIVAIVTRDELPKFDAVKIKLIEEGTRKSEKAER
FT                 EVKAETQAVYTHAQNNSKERNKQFNGKCFNCDKFGHRASECKSKKKNEKRY
FT                 DRKRASSEQASSLMHCFAGEQKKSVWCVDSGATSHMCCDRNMFTNYVEKET
FT                 PIMLAANKYVAAKGIGNVKIKGEHCIINLKNVLHVPELHMNFFSVSAASKF
FT                 ENSTSFKGKVSIIKNNKGEVLLKANEENNLYVFTQSSQSSSVHSMSTNSPA
FT                 MQWHNRFGHLNFKDLKQLNDKQLVHGMNVENMQVQMNCDTCNQSKLSALPF
FT                 NQKMNRSTEDVLELVHTDVCGPMNIKSIGGNRYFVTFIDDYSRMIFVYIMK
FT                 AKNEVFEKFKTFKSFAECQTGKKIKALRSDNGTEYVNKQFTDFLTECGIQR
FT                 QLTIPYTPQQNGVAERANRTIVEMAKSLLIHAKLGEFLWAEAVTTAVYLRN
FT                 RCPTKALNGGTPFEMWRDRKPSVKHLRVFGSRVFALDKAKTSKFQAKGKKY
FT                 IFVGYSHTAKAYRLYDPEKRSVIERRDVKFIEGEFDTKTIENVEDTNNDFM
FT                 TIIISLDTPELTGHEQMTPDESSKSEEGQENEENPEAESNNNDAPVTRQQR
FT                 GPGRPTIIRNGQPGRPTKQYQTRLNSVFDQVDTETPQSVEEALQSQYAQEW
FT                 RESMETEYRALQENCTWTLCDLPPAQKAIGSKWVFRIKRDKNGNVEKFKSR
FT                 LVAQGCGQQFGVNYLETFSPVIRYETIRMLLAIAAEKRLYMHQIDITNAYL
FT                 NSELHETVYVKQPANFVDNSQPKAVLKLNKALYGLKQSGRAWNKTLDEVLH
FT                 SIGFNKCKNEACLYTKVEEEAFSYIAVYVDDLIIACPNKTDIAMIKKKLAS
FT                 KYKTHDGGTIIYFLGMEIERDGELGSISLCQKSHIKRLLETYGMSKCRQVN
FT                 TPLDPGFQVECSDDDCKKVNKTQYQSLIGSLMYLAVLSRPDILHAVCKLSQ
FT                 RNNDPHAEHEAAAKHILRYLAGTMDLAITYSKCDESATGYADADWANDRRD
FT                 RRSYSGYAFFLAGSVFSWTSAKQSVVALSSTEAEYIALTLAAKEAVYLRRL
FT                 LNEIGWSTDEKPMKIHGDNISSQHIAQNPVHHKRTKHIDIKYHFVREKLQS
FT                 KEIELTYVNSNCNVADILTKCLHKSKHNYFVKLLGLS"
XX
SQ   Sequence 4078 BP; 1454 A; 744 C; 921 G; 959 T; 0 other;
     ttggttatgg gcccagagta atcgctattc ggtttaatat acaaaagtgt ctaagagcaa        60
     agagtcgttt ttatttttgc ttagtgatca atagttaata tcgtgcgcga attaacgcgg       120
     aattgcaagc aaaatgaaca tgtcgtacca aatcgaaaag cttgatgaaa ataattacgg       180
     cgtgtggcat atggccatgg aaagtgtatt ggaaatggcc gacctatggg aagttgtttg       240
     tggaaaatat gagggtcaag atgatgcagc agccgcgaaa tggtacaagg atgataagaa       300
     ggcaagagca tatataactc taaacgtaaa gccatctcag ttgatgcata ttaaaaggtg       360
     cacaacagcc gaagaaatct ggagaaaact caaagagttg cacatgccag ttggacctat       420
     tcaaaaggtg caagcatatc agaagctgat tcgattaagc atgcagcagg gagatgacat       480
     cgtcacttat atcaattcat ttgttgaaat aattgataaa ttggcagagc tagatataac       540
     tctaaacgac gagttgaagg taattatgct actgagcagt ttaccagata cgtgggagag       600
     cttcatagta gctatagtta cgcgcgatga gttgccaaaa tttgatgctg taaaaatcaa       660
     attaatagaa gaaggcacac gaaagtcaga gaaggcagaa agagaagtta aagcagaaac       720
     gcaagctgtg tatacccacg cacaaaacaa ttcgaaagaa cggaataaac agtttaacgg       780
     aaagtgtttc aactgcgaca aatttgggca ccgagcaagc gaatgcaaat caaagaagaa       840
     gaacgaaaag aggtacgaca gaaagagagc gagcagcgaa caagcaagca gtttaatgca       900
     ctgttttgct ggagagcaga aaaagagcgt atggtgcgta gacagcggcg caacatctca       960
     tatgtgttgc gatcgcaaca tgtttacaaa ctacgttgaa aaagaaacgc cgataatgct      1020
     agctgcaaat aagtatgttg ctgcaaaagg gattggaaac gtcaaaataa aaggagaaca      1080
     ctgcataata aatttaaaaa atgttttgca tgtgcccgaa ctccatatga attttttctc      1140
     agtgagtgca gcatccaaat ttgaaaactc cacatcattt aaaggcaaag tgtcgattat      1200
     taaaaataat aaaggcgaag tgttgttaaa agcaaacgaa gaaaataacc tgtatgtgtt      1260
     tactcaaagt tcacaaagca gctcagtaca ttcaatgagc acaaattcgc ccgcaatgca      1320
     atggcataat agatttggac accttaattt taaagattta aaacagctga acgataaaca      1380
     gctagtgcat ggtatgaatg ttgagaatat gcaagtgcag atgaattgtg atacttgtaa      1440
     ccagtccaaa ttgagtgctt tgccatttaa tcaaaaaatg aatcgaagta cagaagatgt      1500
     gcttgaatta gtgcacacag atgtatgtgg accaatgaat atcaaatcaa tcggtggcaa      1560
     tcgttatttt gtgacattca ttgacgatta ctcgcgcatg atattcgtct atataatgaa      1620
     agcaaaaaac gaagtttttg aaaaattcaa gacatttaaa agctttgcag aatgccaaac      1680
     aggcaagaaa ataaaggctt tacgcagcga taatggcacg gagtatgtaa ataaacagtt      1740
     tactgatttt ttaactgaat gcggtataca aaggcagttg acaataccgt atacacctca      1800
     gcaaaacggc gttgcagagc gtgccaaccg gaccatagta gaaatggcaa aaagtctact      1860
     aatccatgca aagcttggtg agtttttgtg ggcagaggct gtcacaacgg ctgtatatct      1920
     gcgcaataga tgtcccacaa aggcgttaaa tggaggcaca ccattcgaaa tgtggagaga      1980
     tcggaagcct tctgtgaagc atttgcgagt gtttggatct cgcgtgtttg ctctggacaa      2040
     ggctaagaca agcaaattcc aggcaaaagg aaagaagtat atttttgttg gatactctca      2100
     caccgcaaag gcataccgtc tgtacgatcc agagaagcga agtgttatcg aaaggcgtga      2160
     cgttaaattc atagagggtg agtttgacac aaaaacaatc gaaaatgttg aagacacgaa      2220
     taatgatttc atgacgatca taataagcct tgatacacca gagcttacag gtcatgagca      2280
     gatgacaccg gatgagagca gcaaatcaga agaagggcaa gagaacgaag agaatccaga      2340
     agctgaaagc aacaacaatg atgcaccagt gacacgacag cagcgtgggc ctggcaggcc      2400
     tacgataatt cgaaatggtc aaccaggacg accaacgaag cagtaccaga cgaggctcaa      2460
     tagtgtgttt gatcaagtag acacagagac acctcaatcc gtcgaagagg cgttgcagag      2520
     tcaatacgcg caagagtgga gagagtccat ggaaacagag tacagagcac tccaagaaaa      2580
     ctgcacatgg acattatgcg acctccctcc agcgcaaaag gcaattggtt caaaatgggt      2640
     ttttcgaatc aaacgcgata aaaatggaaa tgtcgagaag ttcaaatctc gcttagttgc      2700
     acaaggatgt gggcaacaat ttggcgtaaa ctatttggaa acattttcgc cagtaattag      2760
     atacgagaca atcaggatgc ttctcgcgat agctgcagaa aaacgtttat atatgcacca      2820
     aatagacata acaaatgcat atctaaacag cgagcttcac gaaactgtgt atgtgaagca      2880
     gcctgcaaac tttgtagaca acagtcaacc taaagcagta ctaaaactga acaaagcgct      2940
     ttacggactt aagcaatcag ggcgtgcttg gaataaaaca cttgatgagg tcttgcattc      3000
     cattggattc aacaaatgca aaaacgaggc ctgtttgtac accaaagtgg aagaagaagc      3060
     attcagctat attgccgtct acgtcgacga cttaatcatc gcgtgtccaa acaaaacaga      3120
     catagcaatg attaagaaga agcttgcatc aaagtacaag acgcatgatg gaggcaccat      3180
     aatctatttc ctaggcatgg aaattgagag ggacggtgaa ctaggttcaa tttcgctatg      3240
     ccagaaatca cacatcaaaa gattgctgga aacatacggc atgagcaaat gccggcaagt      3300
     caatacacca cttgatccag gttttcaagt tgaatgtagc gacgacgact gcaaaaaggt      3360
     aaataaaacc caatatcagt cactaattgg ctcccttatg tatttagcag tgctgagccg      3420
     acccgatatt ttgcacgcag tatgcaaact atctcagaga aataacgatc cgcatgcaga      3480
     gcatgaagct gcagcaaaac atattctcag gtacctggca ggtacgatgg atttggctat      3540
     cacatacagc aaatgtgatg aatcagcaac aggatacgcc gatgcagatt gggcaaatga      3600
     cagacgagac agacgctcat atagtggcta cgcgttcttc ctcgctggca gtgtattttc      3660
     ttggacttca gcaaagcaga gtgtcgttgc tttaagcagc acagaagcgg agtacattgc      3720
     gttaacgttg gctgcaaagg aagcagtcta tttgcgaaga cttttaaatg agattggctg      3780
     gtcaacagat gagaagccaa tgaagatcca tggtgacaat atcagctcgc aacacattgc      3840
     acagaatcca gtgcatcaca aacggacaaa gcacatagat attaagtacc actttgttcg      3900
     tgaaaaatta caatctaaag agatagaact tacatatgtg aattcaaact gtaatgtagc      3960
     tgatattctt accaaatgtt tacataagtc taagcataac tatttcgtta agttacttgg      4020
     tttatcctag caaaagattt attaactaaa aaaagattat atgtagctta agaagaag        4078
//
ID   Copia-4_DMo-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-184
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 184 BP; 67 A; 37 C; 21 G; 59 T; 0 other;
     tgttgaaaat gtaattgaaa ttagcattaa cataagcata catgtaatct ggcaacacca        60
     tacgaagaat gtaattaaca ttattctgtt tatattttac tctttattaa acctttaacc       120
     gaaccacaac gtttttactc tcgctggcat tgcaacgcaa acattaagcc aaatatctcc       180
     aaca                                                                    184
//
ID   Copia-4_DMoj-I repbase;    DNA;    INV; 4761 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DMoj_;
KW   Copia-4_DMoj-LTR; Copia-4_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4761
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1273-1273 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1574-2080] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(935..3019,3023..4264)
FT                 /product="Copia-4_DMoj-I_1p"
FT                 /translation="MQLASSNHGLAFMMRKLIENKSSNSELNFIIDSGATD
FT                 HLIKDESLFTDCVELEQPMKIAVAKEGVYILATKCGIVRLQNEYNITLEDV
FT                 LYSKEATENLISVKRLQQAGMSILFDKDGVAISKNGVTIVKNTGMFGNIPV
FT                 VKFQAYIMNARNNYQLWHERLGHVSKSKLFEIKNNDLFSDSNILANLKISN
FT                 EICESCVLGKQARLPFNQSKDKNHIKRPLFVIHSDVCGPITPTTIDDKNYF
FT                 VIFVDQYTHYCVTYLLKLKSEVFNVFRDFVEKSQAHFNLKIVNLYIDNGRE
FT                 YLSNEMRAFCVQKGISYHLTVPHTPQLNGVSERMIRTLTEKARTMVNGAKL
FT                 DKRFWGEAVLTAAYLINRIPSRALGSNQVTPYEMWHNRKPNLKSLKVFGST
FT                 VYVHNKNKKSKFDEKSYKAILIGYEACGYKLWDVMKKKVIVARDVIVDETN
FT                 MINSRAVNVDNVLNESKESKLDNVLNESKESNVDNVLNESKESKLDNVLNE
FT                 SKASKVDNVLNESKEYDQPEFLNESKESNQHNFSNENKKRKQFDPLNDCEE
FT                 VYQSQKKTDSNVATRRSERLSAKPRISYNKDNDSLTNYVLNAHIVFDEIPS
FT                 SFEEIKLRSDKSAWEEAIKTELEAHKINNTWTITKKPADKNIVDSKWVFSI
FT                 KYNELGVPIKYKARLVARGFTQQYKVDYDETFAPVARIASFRCILAAVQYN
FT                 LKVHQMDVKTAFLNGTLNEEIYMQPPQGVQCDEGNILKLNKAIYGLKQAAR
FT                 CWFQVFEQVLKECSFINSQVDRCIYILDEGDIKENIYVLLYVDDVVIATEN
FT                 IKRLNNFKGFMSKRFRMTDLNEIRRFIGIRIEMNQDKILLSQSAYIKRILN
FT                 KFNMDDCNPVSTPLPNKLDYDLLNSDDECNAPCRNLIGCLMYVMLCTRPDL
FT                 TTAVNILSRYTNKNNNELWKCLKRIIRYLKGTIDMKLIYKKNKLHENILVG
FT                 YVDSDWGGNQIDRKSTTGYLFKIFESNLICWNTKRQNSVAASSTEAEYMAL
FT                 FEAVREALWLKSLLTSISIKFDKPIKIYEDNQGCISIANNPSCHKRAKHID
FT                 IKYHFSREKIENNHICIEYISTEKQLADIFTKPLPAGRFAELRDSLGLLQE
FT                 K"
XX
SQ   Sequence 4761 BP; 1746 A; 642 C; 891 G; 1458 T; 24 other;
     ggttatgggc ccagtccatg ccgttttaga gaaaataaat tcatattagt tcttgtgaaa        60
     ttaactcgcg tgcatttttt ttcgcgtawa tttttkkctt tatttcgaac agtawckkcg       120
     ktccwatwwt wawatggata agttaacaac aaawatattt ttcaagttaa aaacaaaaat       180
     attctgcatt gcaatttcga atcagggaag cacttgccga attagatgtg ctaaaagttg       240
     tcgatgaagc tattccacac gaaattgacg attcgtggaa aaaggcggag agatgcgcga       300
     aaagcacaat agtccaacat ttgagtgact catatttaga ctttgcgaga aacaatgtct       360
     ctgcacgaga aatccttgaa aagctagatt cmatttatga mcgcagaagt cttgcawgtc       420
     agwtgactgc tcgtaggcgc ctaactgcac ttcaattawc kagtgaaatg gmactatcaa       480
     gttttttttt ataaaatttg atgaaatcat gagtgaamtt ctagcagcag gtgcaacgat       540
     gagtgagatg gaaaaagtta cacagttatt aatgatgttg ccctcaactt atgatagcgt       600
     cgttacggca attgagactt tggcagatga gtttatttcg ttagcttttg ttaaagacaa       660
     attgttagat tttgaaatta agataaagaa caatagaaat gacactagta gcaaggtgtt       720
     gaaggcagtt gtgagacaca atagcaattt taataaaaaa catacgttta aaggtaggag       780
     cacagtgcaa aagagaccaa ttaaaggaaa aggtagaatt aatataaagt gtcaccactg       840
     tggtagaata gggcatatta aaaagaattg ttttcaatat ctaagagaaa ataaaaacaa       900
     agaaaataat gatamtgaaa ataatagtaa acaaatgcaa cttgcatcat caaaccacgg       960
     tcttgcattc atgatgagaa agttaattga aaataaaagt tcaaattccg aactaaactt      1020
     tattattgac tcgggtgcaa cggatcatct aatcaaagac gaatcgttat ttaccgattg      1080
     cgttgaattg gagcaaccaa tgaaaattgc tgtagcaaag gaaggagtat acatactggc      1140
     tacaaaatgt ggaattgtgc ggctacaaaa cgaatacaat ataactctgg aggatgtgct      1200
     ttattcgaag gaggcaacag aaaacctgat atcagtgaag cgtctacaac aggctggtat      1260
     gtcaatccta tttgacaagg atggagtagc gatctcaaag aatggagtga ccattgtgaa      1320
     aaatacaggt atgttcggta atatacctgt tgttaaattc caagcgtata ttatgaacgc      1380
     aaggaataat tatcaattat ggcatgagag gttaggtcat gtgagcaaaa gtaaattatt      1440
     tgaaataaag aataatgatt tatttagtga tagcaatatc ttagctaatt taaaaatttc      1500
     aaatgaaata tgtgagtcat gcgtattggg aaagcaggct aggttacctt ttaatcaatc      1560
     aaaagacaaa aatcacatta agcgaccctt gtttgtaatt cattcagatg tttgtggccc      1620
     aattactcca acaacaatag atgataaaaa ctattttgtg atcttcgtag atcaatatac      1680
     acattactgt gtaacttatc tactaaaact taagtcagaa gttttcaatg tatttagaga      1740
     ttttgttgaa aagagtcaag ctcatttcaa tctcaaaatt gttaatctat atattgacaa      1800
     cgggagagaa tatctttcaa atgaaatgcg tgcgttctgt gtgcaaaaag gcataagtta      1860
     tcatttgaca gtgccacata cacctcagtt gaacggcgtg tcggagagaa tgattagaac      1920
     cttgacagaa aaagctcgca ctatggtaaa tggtgcaaaa ttggataaaa gattctgggg      1980
     tgaagcagtg cttactgcgg catatttgat aaatagaatt ccaagcagag cacttggtag      2040
     taaccaggtt accccatatg agatgtggca caataggaag ccaaatttaa aatctcttaa      2100
     agtctttggt tcaactgttt atgtccacaa taagaataag aagagcaagt tcgatgaaaa      2160
     atcttataaa gccattctta ttggatatga ggcatgtggt tataagttat gggatgtaat      2220
     gaaaaaaaaa gtcatagttg ccagagatgt tatcgtcgat gagacaaaca tgattaattc      2280
     tagagcagtt aatgttgata atgtcctgaa tgagagtaag gaaagtaaac ttgataatgt      2340
     cctgaatgag agtaaggaaa gtaatgttga taatgtcctg aatgagagta aggaaagtaa      2400
     acttgataat gtcctgaatg agagtaaggc aagtaaagtt gataatgtcc tgaatgaaag      2460
     taaggaatat gatcaacctg aattcctgaa tgagagtaag gagagtaatc aacataattt      2520
     ttcaaatgaa aataaaaaaa gaaaacaatt tgatcctcta aatgattgtg aggaagttta      2580
     tcaatctcaa aagaaaactg actctaacgt agcaactaga agaagtgaaa ggcttagtgc      2640
     taagcctcga atatcttaca ataaagataa tgatagcttg actaattacg ttttaaatgc      2700
     acatatagtc ttcgatgaga ttccaagttc atttgaagaa ataaaattga gaagcgacaa      2760
     atctgcttgg gaggaggcaa taaaaacaga gctagaggct cacaaaatta ataacacttg      2820
     gacaattaca aagaagccag cggataagaa tatagttgac agcaaatggg tattctctat      2880
     taaatataat gagctaggag tcccaattaa atataaagca agattagttg caagaggttt      2940
     tacccagcaa tataaagttg attatgatga gacttttgcc cctgttgcta gaatcgcaag      3000
     ttttagatgc attctagcak wagcagttca gtataattta aaagttcatc aaatggatgt      3060
     aaaaacagca ttccttaatg gtacattgaa tgaggaaata tatatgcaac ctcctcaagg      3120
     tgtacaatgt gatgaaggaa acattttaaa gttaaataaa gctatttatg gtcttaaaca      3180
     ggcggctagg tgctggtttc aagtgtttga gcaagtattg aaggaatgta gctttataaa      3240
     ctctcaagta gatcgttgta tatatatcct agacgaaggt gatataaagg aaaacattta      3300
     tgtattatta tacgttgacg atgtagtaat agctacagaa aatattaaaa gattgaataa      3360
     cttcaaaggt tttatgagta aacgattcag gatgactgat ctaaatgaaa tacgacgttt      3420
     tataggtatc agaatagaaa tgaatcaaga taaaattctt ttaagtcagt ctgcatatat      3480
     aaaaagaatt ctaaataaat ttaacatgga tgattgtaat cctgttagta ctcccttacc      3540
     gaataagtta gactatgact tgcttaactc agatgatgaa tgcaacgccc cttgtcgaaa      3600
     cctaattgga tgtctcatgt atgtaatgtt atgtactaga ccagatctaa ctactgctgt      3660
     aaatatctta agtagataca cgaataaaaa taacaatgaa ttatggaaat gcttaaaaag      3720
     aattataaga tatttaaaag ggaccattga tatgaaactt atctataaaa agaataaatt      3780
     gcatgaaaat atactagttg gttatgtaga ttctgattgg ggtggaaatc aaattgatag      3840
     aaaaagtaca acaggctact tatttaaaat attcgaatca aatctaattt gctggaatac      3900
     aaaaagacaa aactctgtag ctgcttcatc aactgaagct gagtatatgg ccctatttga      3960
     agccgttaga gaagctttgt ggttgaaatc tttactcact agtattagta ttaaatttga      4020
     taagccgatt aaaatttatg aagataacca aggatgtatt agtatagcaa ataacccctc      4080
     atgtcataaa agagccaaac acattgatat taaatatcat ttttcaagag agaaaattga      4140
     gaataaccat atatgcattg agtatatatc cacagagaaa caactggctg acatctttac      4200
     caaaccgcta cccgctggac gttttgcaga gctacgagat agtttgggat tgcttcaaga      4260
     gaaataacaa tatacatata cttatatatg cgtgtgtata catacaaatg tatatctgta      4320
     tacagagata ttgaattcta tgaattattt tttttttttg ttaaacaaaa gatattttga      4380
     attgttaatt ttttttttaa ttttttttat atatatatcc attatgttta tatttttttt      4440
     attttttgtt aaacaaaaga tattttgaat tgttaatttt taattttttt tatatatata      4500
     tccattatgt ttatatgatt tatacaaatg tttaagataa tgatctgatc gggtttttct      4560
     gggttttccc cgtatccttg cagcgaatgc tggatcattt aacacttccc agatagcaca      4620
     ccaaccactt aagtttaata tttctcgaat tgaattattt atgtattatt tttcaaaagt      4680
     tataataatg ttattcttga ggagggcgtg ttgaaatacc agattcaata ataacattat      4740
     tgtatagtat ttaagtgatg t                                                4761
//
ID   Copia-4_DMoj-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DMoj_;
KW   Copia-4_DMoj-I; Copia-4_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-233
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1274-1274 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 233 BP; 87 A; 30 C; 30 G; 86 T; 0 other;
     tgaaatacca gattcgataa taacattatt gtatagtatt taagtgattt atcatataag        60
     gacatttggt cacactgaat tatgatctgt ctctctttaa atattctctc aagtgtaaag       120
     acgtggtttt ggtgttgctg aaattaatct attaaaataa actgaatcat ataactaaat       180
     taaaagataa atactctatt atttctctaa agtaaaaagc tagttttcca aca              233
//
ID   Copia-4_DTa-I repbase;    DNA;    INV; 4012 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4012
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5695-5695 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4012 BP; 1242 A; 748 C; 1061 G; 948 T; 13 other;
     ggttatgggc ccagagcata gttttgctgc gtgaagtaca ttaaaaaaag gtagtttcgg        60
     tatatgtacg ccgcgggata acgagagtta cgtggagtac atttttattc ggtcatcatg       120
     agcgccatgt atcagattga taaactggac acgggaaatt atgacacctg gataatccaa       180
     atgcgcagtg tgctggtcca tgcagaggtc tggaaggtga tccagggaca gcggccagat       240
     ggagatgacg gaacatggga cggactcgat caaaaggctt tagcaatgat tacgttgagc       300
     gtgaagcaaa ctcagttggg ttaccttaaa agctgtgcaa cggccagcag cgcttggcaa       360
     aaacttaaag atgttcacca gccaagcggg ccagtgcgta aagtctctct atacaaaaag       420
     ttacttggga tgcgtatggc agaaggtgac gatataataa cgcacataaa tgcgttctgc       480
     tcgacagtgg acaaacttag tgaagttgat attaagttag gtgacgaact aacagcaata       540
     atattattgt cgagtttaag caaagagttc gagaatttcg tcatagccat ggaaacgcgg       600
     gataatttgc ccttgttgga tgtkttgaag gttaaacttc ttgcagaagg agagagaagg       660
     aacagcgaag tcaaagaaag ggcagaatat gaacagttag cttttcatgc aaagtcgcag       720
     ccggagaaca caaggaataa gagaaaagac aaatccaacg tggagtgcta taattgcgga       780
     cggcgaggtc actataagaa tgagtgtaaa aagcaaggca agaacgaatt ggcaaaggag       840
     acacaacagt acaagaacag atcgtataca gtagtacctg caagtgacgt acaagagtta       900
     gaagtttcta gctggtgtct tgatagcggg gctacagctc atatgtgttg cgttcgaagt       960
     ctttttgtta attatgtgcc gcgagtggag gatattattt tggccgataa caacgtaatg      1020
     agagcagttg gaaaaggtga cgtgacagtg aaaacagatt attgcaattt gacactgcag      1080
     aatgttttgc acgtaccagc aatgaaagga aatttcatgt ccatcaattg tgcagtttcc      1140
     cgtggttgta cggttacttt tsgcaaagac tgtgcgattg tacaccaaga cggagaagaa      1200
     gttttgaaag cgcacaggaa aaacaaattg tttgtttttg agagcaaaag aaatwcttgt      1260
     ttcggcgcta tgcaggctag tgcgagtcta tggcataacc gatatggaca tttaaactat      1320
     gcgagtttaa acgatttggt aagacattca atggttcaag gaattaatgg tgtaaatttt      1380
     gcagaaaaaa gccagtgcct gtcatgtatg aagagcaaga tacacacaca gccgtatcca      1440
     gtgtccgaga acagagccaa acatcagctg gagctgatcc atacagatgt gtgtgggcca      1500
     atggaaaaaa ggtctattgg aggagcacca tattttgtca catttattga cgatatgacc      1560
     cgccgtgtgt ttgtttattt cataaaatcc aaagacgaag tatacgacaa atttcttgcg      1620
     ttcaaaaaca tggcagagag tcagcttgga cacaagataa aagcagtacg cagtgataat      1680
     gggcgtgagt ttgttaataa acgttttgac aatttgttcc aagaaaatgg cattatacgg      1740
     cagtcgactg tgccatatag tccgcagcaa aacggcgtgg cagagcgagc caacagaacg      1800
     cttgtggaaa tggccaggag tttgctcata cattcaggaa tgccagagag tctatgggca      1860
     gaggcggtga tgacagctag ttacatcaga aatcgatcac ccacagcagc tcttgttgga      1920
     atcactccct acgaggcttg gagtggcaaa aaacccaatg tgagccattt gcgtattttt      1980
     ggatcgtcag cggtaggact aaacaaatgt caccgcggta aattcaaggc aaaaggcaag      2040
     gagtatcggt tcgtcggata ttcactggag tcaaaagggt acaggttgta cgatccggtg      2100
     acacagcagg tcgttgtgaa gcgcgacgta ctttttaatg agatacaaca agatgagcct      2160
     aagatttttg aattcccakc agcacaagcg tcgtcgagkg aaccaacaga tgtactcaaa      2220
     gtagagttgc agcgcgatgs agatgagcag caggacgaat ccgaaggasc cgcagatcgt      2280
     gaccagcagg atgaggagcc agtgcaccct gaaggagagg cagtcagaat tgggccaggg      2340
     aggcctagaa ttattcggac cggcaagtca gggcgaccaa ggaaggaatt taacgtgctc      2400
     aacgcaatga ccaaagcwga aattccactt ccgcaaagct gtactgaagc gctaagtagc      2460
     cagcaagctt ctttttggaa ggcagccatg aagtcggagt atgactcgct cgtcgcaaac      2520
     aatacatgga cccttagcga gttgcccaag ggacagaagg cgataggatg ccgatgggtt      2580
     tttaccataa agagagacag cgaagggaat cccgagcggt acaagtcccg tttggtagcc      2640
     aagggttgct cacaaaaatt cggagttaat tatggagaaa ctttctcacc agtgtgccga      2700
     tatgagacaa tccgcctagt tttggcgctg tcagtggagc taaagatgta cctacaccag      2760
     atggatgtgt gcacagcata tctcaatagt gatttgagcg aatgtgttta catgatgcag      2820
     ccaaagagtt tcgaggacga agcgtgcaag ggcaaggtgc taaggctcaa maaggcgata      2880
     tatggactga aacaggcagg ccgagagtgg aacgctacwt tggatgcagc acttcgagag      2940
     atcggattcg tsccctgtca atatgaagcg tgcttgtata agcaggacat aaacggtaac      3000
     ttgtgtcttg tactaattta tgtcgatgat cttcttgtag cgtgtcagaa caaagcggac      3060
     ctaatgcaga tcaaatcgat gatagcttcg aaatttgaat gcgtggacaa aggccagctg      3120
     aatatgtttt tgggcatgca gattgaacgt gaaggcgagt tgggcagtat aacgatgaac      3180
     cagacgttgt acatcaagga tatgctgcag cgacatggtc tggagcagtg caggcacacg      3240
     aaaacacctt tagacgcagg atttcaagtg gtatgcaacg acgagcattg tgttgttcag      3300
     gatccaactg catatcagtc agcgacagga gaattaatgt ggcttgcatt aatctcaagg      3360
     ccagatatct accattccgt ggtgaagtta gcgcaacgaa ataaggaccc gcatggcgaa      3420
     catgtccttg ccattaagca tgttatgcgg tacttggcag gaacggccac caacaagtta      3480
     agctattgcg caggtgactt gccactagtg ggctacgtgg acgccgactg ggccggcgac      3540
     gtcagccacc gacggtcgta tacwggattt attttcctta tggcaggagg acccatttca      3600
     tggaagtcgg agaagcaaga cagtgttgcc ttgagcagca cggaggctga atacatggcg      3660
     ctgtcatcag cwgtaaaaga ggcgctacat ttgaggcgtt taatcatcga gatcggttgt      3720
     ggacgagagg atacacccac aattatctac ggaggcaatc tcagcgcaca gaatttggcg      3780
     aaaaatccag tttatcatgc acgttcgaag catattgata ttaggtatca ttttgttagg      3840
     gaagttatcc agcaaggcga tgtaaaattg aaatatgtat caaccaacga tatgatagct      3900
     gatttgttaa ctaagaattt gtcaaaacta aaacatgaga aatttgttaa acttatgaat      3960
     attatgtaaa tattgtaccg agaaatataa acatggtaac attgaggaga gg              4012
//
ID   Copia-4_DTa-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-236
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5697-5697 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 236 BP; 80 A; 51 C; 43 G; 62 T; 0 other;
     tgttgaaatt agttccaatg tcccatgtat taacataagc atataacaga atgtaagaat        60
     aacatcagag gagcgaactt cgagctgtta tgttacactc ggtcactcga gtaaagttag       120
     ccgtcaacag tagatcaccg cgcagagccg cgattaataa ataattatta ccaaattaaa       180
     aaccaacgct tctttactta atgtacactc gggcggtcgg aattctcccc tgaaca           236
//
ID   Copia-4_DWil-I repbase;    DNA;    INV; 4014 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   04-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DWil_;
KW   Copia-4_DWil-LTR; Copia-4_DWil-I.
XX
NM   Copia-4_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4014
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4014
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (04-DEC-2021).
XX
CC   ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(108..458,425..3976)
FT                 /product="Copia-4_DWil-I_1p"
FT                 /translation="MSTQFSIEKLDGENYSVWSVQMKXLLIHSDLWSVTCG
FT                 RLKKEVSDTTEQKELFDSKDEKALASILLCVSPSQINGIKHCKTASEAWAK
FT                 LSAIHMPSGPARKIQLFKQCWLQTVFESIAMLATDSIREHLNNFSNVVEKL
FT                 NEIQEQVPDEMLVIILLASLSDDFENFVVAIETRDSLPSLSALKIKLLEEG
FT                 ERRKIGEVAEKSENKMYSSRQENGKKNKAMREPKNIECWLCGRRGHXASKC
FT                 GSKERKDNASEKNSKKSFSVLSTSGTRIGLSKNAWCVDSGATAHLCADKSM
FT                 FTSMREHKEKIKLAGDSYIEAEGCGTVELKCKNITIELVDVLYVKDLQCNF
FT                 ISVSKATENGLRVIFVKNKVFVKDSNNRDLMIAEKHNGLFLFESKTKTVFA
FT                 AEANVNQLVKWHDRFGHLNFDSLNKMIKQEMVYGLNARVCSTNDLVCETCA
FT                 KSKICVKKFPKFSESRSKELLGLIHTDICGPMRTASQGGARYFATFIDDKS
FT                 RYVSVYMLKNKSDIFQKFKDFKMLAENQTGKRIKAIRSDNGREYLSDVFEQ
FT                 FLSSHGIKRQLTVPHTPQQNGVAERANRTLVEMARSMIVHAGVGESFWGEA
FT                 IMTAAYLRNRAETATLPDNTPYEVWYGKKPSVSHLKVFGMKAIVLDKTHKN
FT                 KFSAKGKQHILVGYSETAKAYRLYNPVKRTVVVSRDVVFLEHKFMKELEHG
FT                 RESSCESDVVIFQPSEKLDCEHNDEIQENSVEQQIPIVDEQSGDEENAEEE
FT                 QPYTRRGPGRPKIVRTGRAGRPRREYNMLNVLDAKDVIVPTCINEAFKSEQ
FT                 SENWKSAMQKEYDNLENIKTWSLVDLPANKKVIGCKWVFTTKRDESGKVQR
FT                 FKARLVAKGCGQQYGINYKETFSPVARYSSIRLVIALAVEHEMHLHQMDVS
FT                 AAYLNSELQDDVYMRQPEGFVDADHPKRVLKLHKSLYGLKQSGREWNQKLD
FT                 SVLLKIGFVPCASEPCIYTSKVNGYLCIIVVYVDDFILACTRKDDVAYIKQ
FT                 LISNEFDVVDGGELHHFLGMEIERDGKTGNVSIGHKQYIEGLLHEYGMQDC
FT                 KPNATPLEVGFQTKCDSDDCGQVDKTRYQSLIGSLLYLALTTRPDIIHSVA
FT                 KLAQRNADPHKEHEVAAKRVLRYLRGTSDVRLHYSKTGVPIHCFVDADWAG
FT                 DCNDRKSFTGWSFLIAGAAVSWESKKQNLVALSSTEAEYVALSTAAKEAIY
FT                 IRKLINEMGFGPMAKLLIYSDNQSAQCLAKDAKFHSRSKHIEIKYHFVREM
FT                 YKENVIDIKYIPTDSMTSDILTKNLCKVKHVKFTEMLGLK"
XX
SQ   Sequence 4014 BP; 1291 A; 670 C; 1003 G; 1047 T; 3 other;
     ggttatgggc ccaggcagca gaaagtaaaa ctgtgcgggt tagtcggaaa gacttgtaag        60
     agattcgttt tgttaattaa agtttgtgat taactaattc gttcaagatg agtacacaat       120
     tttcaatcga aaaactagat ggtgaaaatt atagtgtatg gtcagtacag atgaaaastc       180
     tgttgattca ttctgatttg tggtcggtga catgtggtcg gttaaaaaaa gaggtgtctg       240
     atacgactga acaaaaggag ttgtttgaca gtaaagacga gaaagccctc gcaagtatat       300
     tgttgtgcgt aagtccgtcg cagatcaacg gtataaaaca ttgtaaaacc gcgagcgagg       360
     catgggcaaa gttatctgcg attcacatgc cctccggtcc ggctagaaaa atacagttgt       420
     ttaagcaatg ttggctacag acagtattcg agagcatttg aataattttt ctaatgtcgt       480
     agaaaagtta aatgaaattc aggaacaagt gcctgatgaa atgctcgtta taattttgtt       540
     ggcaagttta agtgatgatt tcgaaaattt tgtagttgcc atagaaacgc gagactcgtt       600
     gccatcgcta agcgctctaa aaattaaatt gcttgaagag ggagagagac gcaagattgg       660
     cgaagtagcc gagaaaagtg agaataagat gtattcgtcg cgtcaagaaa acggtaaaaa       720
     gaacaaagca atgagagaac caaaaaacat tgaatgttgg ttgtgcggtc gtcgcgggca       780
     ttwcgcgtcg aagtgtggtt cgaaagagag aaaagacaac gcgagcgaaa agaacagtaa       840
     gaagtctttt tcggtgctct ctacttctgg aacacgaatc ggtttgtcga aaaatgcgtg       900
     gtgtgtagac agcggggcta cagctcattt gtgtgcggac aaatcaatgt ttacgagtat       960
     gcgtgagcac aaagagaaaa tcaagttagc aggcgacagt tatatagaag ccgaaggttg      1020
     cggtacagtg gaactaaaat gcaaaaatat cacgatcgaa ttagttgatg tgctatatgt      1080
     aaaggactta caatgtaatt ttatttcggt atcaaaggca acagaaaatg gcttaagagt      1140
     aatttttgtc aaaaacaaag tgtttgttaa agacagtaac aatcgtgatt taatgatcgc      1200
     agagaaacac aacggtttgt ttttgtttga aagtaaaaca aaaacagttt ttgctgcaga      1260
     agcaaatgta aatcagctgg tcaaatggca tgatcggttc ggacatttaa atttcgatag      1320
     tttgaataaa atgattaagc aggaaatggt ctatggtctc aatgctagag tgtgtagtac      1380
     aaatgacctt gtatgtgaaa cgtgtgcaaa aagtaaaatt tgcgttaaga agtttccgaa      1440
     gttttcggaa agtcgctcaa aggaattgtt gggcttgatt catacagaca tttgtggacc      1500
     tatgcgtaca gcgtcacaag gtggtgcgcg ctattttgca actttcatag acgataaatc      1560
     acgttatgta tcggtataca tgttaaagaa taagagcgat attttccaga aattcaaaga      1620
     tttcaaaatg ctagcagaaa atcagacggg taagcgtata aaagccatac gaagcgacaa      1680
     cggtcgtgag tacctgagcg atgtatttga acagttctta tcgagtcatg gaataaaaag      1740
     acaactcact gttccccaca ctccacaaca aaatggtgtg gcggagcgcg ccaatagaac      1800
     cttggtggag atggcgcgaa gcatgatagt gcatgctgga gttggcgaat ctttttgggg      1860
     cgaggcgata atgacggctg catatttacg gaacagagca gaaactgcaa ctttgcctga      1920
     caatactcca tacgaggttt ggtatgggaa aaagccgagc gtatctcatc ttaaagtatt      1980
     tggtatgaaa gctattgtat tagataaaac tcataagaac aagttttcag cgaaaggcaa      2040
     gcagcatatt ttggtaggtt actccgagac tgccaaggct tatcgtcttt acaaccctgt      2100
     caaaaggacc gtagtagtat cccgagatgt cgtgtttttg gagcacaagt tcatgaaaga      2160
     gttggagcac ggtcgagaat catcatgtga gtcagatgtg gtaatctttc agccaagtga      2220
     aaaacttgat tgcgagcata atgatgaaat ccaagaaaat tctgtggagc agcaaattcc      2280
     aattgttgat gagcaaagtg gtgacgaaga aaatgctgag gaggagcaac catatacccg      2340
     aagaggacca gggagaccaa agattgttcg cactgggcgt gctggtcgtc cacgaagaga      2400
     gtacaatatg ctgaatgtac tagatgcgaa agacgttatt gttcctacct gtataaatga      2460
     ggcatttaag tcagagcagt cggaaaactg gaaatcagca atgcagaagg agtatgacaa      2520
     cctagaaaat attaagacat ggagtttggt tgatcttcct gcaaacaaaa aggttatcgg      2580
     ttgtaaatgg gtttttacca ccaaacgaga tgagagtggm aaagttcagc gtttcaaggc      2640
     aagattggtc gcaaaagggt gtggtcaaca atatggaatt aactacaagg aaaccttttc      2700
     cccggttgca cgttattcct caatcagact ggtgattgcg ttggcggtgg agcacgagat      2760
     gcacttgcac cagatggatg tctctgcagc atacctcaat agtgagctac aagatgacgt      2820
     ttatatgcga caacctgaag gttttgtcga tgctgatcat cccaagcgtg tactcaagct      2880
     acataaatcg ttgtacggct tgaaacagag tgggcgtgag tggaaccaaa agctggatag      2940
     cgttcttttg aagattggtt tcgttccgtg tgcaagcgaa ccgtgtatat acacgagcaa      3000
     agtcaatggg tatttatgta ttattgttgt atatgttgac gattttatac ttgcatgtac      3060
     cagaaaagac gacgtggcct acataaagca gctcatatca aacgaatttg atgtggtcga      3120
     cggcggtgaa ctccatcatt ttttggggat ggaaatcgag cgagatggca agactggcaa      3180
     tgtctccata ggccacaagc agtacatcga aggcttgttg catgaatatg gtatgcagga      3240
     ctgcaagccg aacgcgactc ctctagaagt tgggttccag acgaagtgcg atagcgatga      3300
     ttgcggtcag gtggacaaga cacgctatca atcactcatt ggttcgttat tgtatttggc      3360
     gttgactaca cggccagata taatacattc tgtggctaaa ttggcgcaga gaaatgcaga      3420
     tccgcacaag gaacatgaag ttgcagccaa gagggtattg agatatctaa gaggtacctc      3480
     agatgtgaga cttcattata gcaaaactgg tgttcctatc cactgttttg ttgatgcgga      3540
     ctgggctggc gattgcaacg atcggaagtc gttcaccggt tggtcattcc ttattgctgg      3600
     agcggcggtg tcatgggaat caaagaagca aaatctggtt gccctcagta gcacggaggc      3660
     cgagtacgta gcactttcta cagcagccaa agaagcgata tacatcagaa agctgatcaa      3720
     cgagatggga ttcgggccga tggcgaagct gctaatttat agtgacaacc agagcgcaca      3780
     atgtcttgct aaagatgcta aatttcattc acgtagcaag catattgaaa taaaatatca      3840
     ttttgtaagg gaaatgtata aagaaaatgt aatagatatc aaatacattc ccacagatag      3900
     tatgacctca gatatattaa caaagaactt atgtaaggtc aaacatgtaa agtttacaga      3960
     aatgttggga ttaaaataat ttttgtataa gatagacttc gcgttgagaa ggag            4014
//
ID   Copia-4_DWil-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   04-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_DWil_;
KW   Copia-4_DWil-LTR; Copia-4_DWil-I.
XX
NM   Copia-4_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 184 BP; 46 A; 39 C; 26 G; 73 T; 0 other;
     tgttaaaata tgtatataag caccgcagta tgtctatctc tttcttatta ttctcgaatg        60
     atccgatctg tgaattgtaa cggacattct ttcatttctg ctttacattc tttttctcgc       120
     tgcctgcgct gcagcgaata ttcttatgca taagtttagt ctctaataaa cctctactcg       180
     aata                                                                    184
//
ID   Copia-4_FoCa-I repbase;    DNA;    INV; 2398 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2398
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2565-2565 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 2398 BP; 849 A; 381 C; 524 G; 622 T; 22 other;
     cgttatcagc acggctctag ttactgctca acttaatctg aaaaagatta atatgtgaaa        60
     agttctacta tataaaaaag tgagactgag accaagatct gaaaaagact tgtgactaat       120
     tcaacattgt taagttgttc taatagtaag tcagaaaatg acttcgacta cgamaatttc       180
     catgaggaga tttgacactt cwtccatctc caagttaaac ggwgawaatt acasggtttg       240
     gaggatgagg wtggtgtgtt tctttaaaac gcataaatta atggaaattg ttgacggaac       300
     accaacactc ccagccgcag ccggacctga ccaagaaaat tgggacgaag gcaacaatga       360
     agccatgacg ttcatgttat ttactatgac agatgaccaa gtggaagcgg tatttggttg       420
     taaaactgca ccagaaattt ggaataaatt gaattccatg tatcaaagca ctagtggaga       480
     aaacaaacaa gccttgtggc aaaagtttta ctggattatg gctgatgaaa aatcgccagt       540
     taaaaccatg attgaaatac agaatattgc ttcacagcta agaagtatgg gagtagtaat       600
     tgatgacgag ctgaagtggc cagagtaatt tccagcttag tgggcgataa atatagtcaa       660
     tttagggagg cctggaggtc ggtggacatt gggaaacaaa cgtactgctc tacttttctc       720
     ccgactaaaa actttggagt tagaagacga agagtcatat aaaagcaaag ctaatcagtc       780
     gtattttgaa gatgaaagtg agagagcatt tagtgtcatg aaaccattca gtaattgtaa       840
     aattggatct acccaaaatg tttggattaa tgactctggt gcaaatcgac attattgtgg       900
     gcgactagac tggttttatg agtatgaaaa atatccgtga ccaaaatcgg tcagcctggc       960
     gataattccc atatgtctgt aaaaggcacg ggagaagtga gagtgaatgc actcattaac      1020
     aaggattgga aagaaattga attcacaatg ttgaatatgt gccaggagga gccaacttac      1080
     tctccgaaaa tgttttactt gacaaaggat ttgaagtcag aaagaaagga aatgatmmaa      1140
     tcgtttatta ccgaaatggt aagcgwgaca ttgaagctga aagaagagat gggcttcaag      1200
     ttatgaaatt taagccgata gtmaacaggg aaatggtttg catgatggct caccataact      1260
     ctgagttttt aaacaaaact gcagatacga aagatgtata tggaccagaa gcaatgggaa      1320
     aagtaccaag ttcaaggttg atgaatgcat gaaagtaaat tctgagatcg cagttgaaaa      1380
     aactgtgata ttcggaaccg gagaattcga caaaaatctc agaaattgag gatttgaatt      1440
     gttttgttgt gactgatgaa acgccctcat tctgtaaacc agtaatgaat gtgaaagatg      1500
     aaattattgt caccaacact acagaaaaca atgtgaaaat acccagatat aataatggaa      1560
     gagattataa gagtcaaagg ttaatctcat ttgcctcgga gaaagaaaat atgtttcggc      1620
     tgaatgaatt gcatacgagt catcgagctt tkaaawatgc aataaacact gatattctgc      1680
     acagacctca wcgtacgaaa agtactgagg aagccccacc tgaacaagca gttawacctg      1740
     tcacacgacg agatgatact aaaaaatcaa accasagaaa cccaggaaaa aataagaaaa      1800
     agaggacgag tgcacgtgcw ttaattccaa agaattatta agtttaatgc accatggtca      1860
     gaagaatttg agaagttaaa gttgttttkc agcataagaa ttctagccct gatcasattt      1920
     catggaaggg aagtcwtttt tcgaagagaa aaaagaacac acttccgtca gtccaactat      1980
     gtgctgaaaa agcataacat aagcgagtat caacctcggc tcattttaat gcagacctgt      2040
     atgcagttta aagggagcga gcgtkctact tatgagtttg cactcattgt tttacttctg      2100
     tgcatgcatt cgaatgcatc agaaggaatt tcccagtatt taaaaaggag aaaatctgtg      2160
     agcattattt atgggattgg cctattcaaa ctggtaaaac cgaaagtttt gtccaaaaat      2220
     gtgaactaaa aagggaaaac cttttgtgga gttttattat tttggtgccc gttctcagca      2280
     gcaawgaata tgtkgaggag cagcagcagt tcaaggagca gcctacccta ctatggagct      2340
     tggtgatgga acgacccgga gaataatatt taattagatc atatatgttt aaagggag        2398
//
ID   Copia-4_FoCa-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-238
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2570-2570 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 238 BP; 76 A; 37 C; 41 G; 80 T; 4 other;
     tgttaaaaat aatcatgata tgatctgcca atgatgtatg tcaattatgt gcatagcatc        60
     awwkattaga ccaccaacta ttatgggtgg atttgcatca gtttattaac ctgctaggtt       120
     atgcatgcat tatgaatgca ttaattgtac ttgcttawat acgacatgac ttgatcttaa       180
     ataaagtagt cgctaaatgt actcgttgag cagatgagct aaacccttat tttgaaca         238
//
ID   Copia-4_LH-I repbase;    DNA;    INV; 4217 BP.
XX
AC   ADOQ01000967;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_LH_;
KW   Copia-4_LH-LTR; Copia-4_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4217
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000967; Positions    1718    5934.
XX
CC   Positions [1521-2036] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           687..3800
FT                 /product="Copia-4_LH-I_1p"
FT                 /translation="MYVKKHAGKRREPNLKTECKAKGASNSVNKTKRDSTN
FT                 VKCFRCGKIGHFAKDCKTQKKDTDDANSAEHTSLCTTFEALSANNLKADLG
FT                 WCLDSGCTSHMSNGKTDFHETQDAFEGNVKLASEKASVPIYGKGHVNIIAK
FT                 VEERTKKFRIENVLRVPELRTALLSVGKIADRGYRIMFDNLKADIIDERNQ
FT                 VVLTAYRKNGLYYLQRTRNEFIPEANFMNDLSAIDNVRAWHRRMGHLNIRD
FT                 LTKCYRDNSVRGMNLKSVNDEFVCETCIRGKMTKILFPDNEPRNTELLEVI
FT                 HSDVCGPMRVESNGRAKYIVTFIDDYSRWCEIRLLKHKNEVLAAFKDFKAK
FT                 VENFHGKRIKFLQSDNGKEYCNTAFDVFLRENGIQRRLTVTHTPEQNGVAE
FT                 RRNRTLLDMTRCLLLDSELPASFWGEAINTADYLRNRCPTRSLGKETPFQK
FT                 WTGQSPDVSHLRPFGTEVFTLDRDPTRGKLDSRSRKGILVGYSEETKGYQI
FT                 WLPNERKIDIARDMKFIESKVDPPRMEPCTNIPIECSETNDEREKDEVVFS
FT                 PPDVSEDVDRDHHIDRDEEYLSSSQDNSELEENEDACDNQCQQRRGRGRLR
FT                 IVRTGGRGRPRKEYQIADETNSATEESFIAKIPLDEALSGPDSKEWLTAIV
FT                 NEMESILKNDTWTVIDRPLCQKIIGSRIVLRNKYKQDGTIDRRKARLVARG
FT                 FAQKPGIDFKESFAPVARSSSIRVMLALAAECEMSVHHFDVTTAFLNGKLE
FT                 EKVYMEVPKYAIEALQQIAGTSSTNDVVRKKATDMLEQIIQGDKVCLLKRA
FT                 LYGLRPAGRCWNARIDRKLLKFGARKTAADSCIYIRGSGDNIVIIAVYVDD
FT                 LLIASKNEGQVKKLEEHLRDQFEITNRGQVKHCLGMEFSIKPGEISIVQSA
FT                 YIRDILERFGMSDCKLVSTPMDSGACLMTCNDEDNSSVTSLPYRELVGALM
FT                 YLSVSTRPDISFTVSYLSQFCHNFTKNHWVAAKRVLRYLKGTANLGLVYRK
FT                 SGRPALGYVDSDWANWTVGFTRGTHSCSTGVL"
XX
SQ   Sequence 4217 BP; 1266 A; 983 C; 1115 G; 853 T; 0 other;
     ggttatgggc ccagagttat ttactcgcga aggcaaaatt tttgagagat atcagataac        60
     gagaagaaca taaagattcc gatatggcgt cgcattacac cgaccgcatg gaactgctaa       120
     ccaaagacaa tttcgaaaca tggaaggtgc agatggaatc cgtactcgta atgcacgacc       180
     tgtgggaata cgtatccggt gagaagccca agccgaccga agccgcgagc gcgcaagagg       240
     tacgatcgtg ggagaaggag gaccaaaaag cgaaaggaaa gatcctcctt gcgatcaaat       300
     ttgctgaact caaacatgtg acggaatgcg tcacatcgca agacgtctgg ttgaagctga       360
     gggcgacaca tcagtcgagc ggaccagcgc gaaaagccac gatgctaaag aggctcatga       420
     gacacaagat ggcggaagac gaagacgtgc gcgattatat cgtaaatttt tttcagacga       480
     ctgacaaact ccgcgaaatg gacgtaaaca ttcgacacga tctactcgcc ctgatgctga       540
     tgaacagtct tccacaaagt ttcgaaaact tcaggtgtgc aatggaatct cgagacatgt       600
     tgccagatct cgaaactttg cgtgtaaaaa tcatcgagga attcgatgcc aggtaggacg       660
     gcgcgagtga cgctacgcca aacgcgatgt atgtaaagaa acatgccgga aaacgtcgtg       720
     aaccgaatct caaaaccgag tgcaaagcaa aaggtgcgtc gaacagtgta aataaaacaa       780
     agcgagacag tacgaatgtc aagtgctttc gttgcggaaa aatcgggcat ttcgcgaaag       840
     actgtaaaac gcaaaagaag gacaccgacg acgcaaactc cgcggaacac acgagtctgt       900
     gtacaacatt cgaggcattg agtgcaaata atttgaaagc ggatctcgga tggtgcctag       960
     atagtggatg cacctcgcac atgagcaacg gaaaaacgga cttccacgag actcaagacg      1020
     ctttcgaagg aaacgttaag ctagctagcg aaaaggcatc ggtgccgatc tatggtaagg      1080
     gtcatgtgaa tattatcgcg aaagtagagg agcgcacgaa aaaattcaga atcgaaaacg      1140
     tgctacgcgt acccgagcta cgcactgctt tgttatccgt cggtaagatc gcggaccgcg      1200
     gctatcgtat aatgttcgac aacctcaagg ctgacattat cgacgagcga aaccaagtcg      1260
     tactgaccgc gtaccgtaag aacggtctat attaccttca gagaacgaga aacgagttca      1320
     ttccggaggc gaatttcatg aacgatttga gcgcgatcga caacgtcaga gcgtggcacc      1380
     gaagaatggg gcatctcaac atccgcgatt tgacgaaatg ttatcgagat aatagcgtac      1440
     gcgggatgaa cttaaagagc gtcaacgatg agttcgtgtg cgagacgtgt attcgcggaa      1500
     aaatgacgaa aattctgttt cctgataatg aaccgagaaa tacggaactt ctcgaggtca      1560
     tccacagcga tgtatgcggg ccgatgcgcg ttgaatccaa cggtagagca aaatatatcg      1620
     tcacgtttat tgacgattat tcgcgctggt gcgaaatacg acttttgaag cacaaaaacg      1680
     aagtgctcgc agcgtttaag gactttaaag cgaaggtcga aaattttcac ggcaaaagga      1740
     ttaagttcct acagagcgac aacggtaagg agtactgtaa tactgctttc gacgttttcc      1800
     tgcgcgaaaa tggcattcag cgtaggttga ccgtaacaca cacccctgaa cagaacggtg      1860
     tagcagagag gagaaatcga actcttctcg acatgacaag atgcctactc cttgactcag      1920
     agcttccagc ctctttttgg ggagaggcga taaacacggc cgactacctg cggaatcggt      1980
     gtccaaccag aagcctagga aaagaaactc cgttccaaaa atggaccgga cagtctccgg      2040
     atgtcagtca tcttcgaccg tttggaaccg aggtctttac attggatcga gatcccacaa      2100
     gagggaaact ggactctcgt tcccgcaaag gcattctggt aggctattcg gaggagacta      2160
     aaggatacca aatttggttg ccgaacgaga ggaagatcga catcgccaga gacatgaagt      2220
     tcatcgaaag caaggtagac ccaccccgga tggagccatg cacgaacatt ccgatagagt      2280
     gtagcgagac gaacgacgaa agagagaaag acgaggtcgt tttctctccg cctgacgtca      2340
     gcgaagatgt agaccgcgat catcatatcg atcgggacga ggaatatctt agctcgagtc      2400
     aggacaacag tgagctcgaa gaaaacgagg acgcatgcga caaccaatgt caacaacgta      2460
     gaggacgagg cagactgaga attgtccgta ctggtggacg aggcaggcca aggaaggaat      2520
     accaaattgc ggacgaaacg aattccgcca cagaagaatc tttcatagca aaaataccac      2580
     tggacgaagc cctgagcgga ccggactcca aggaatggct gacagcgatc gttaacgaga      2640
     tggagagtat tctcaagaac gacacatgga ccgtgataga tagacctttg tgccagaaga      2700
     tcatcggcag ccgcatcgtc ctgcgtaata aatacaaaca ggacggaact atcgaccgta      2760
     ggaaggcgcg tctcgtggcg cgcggattcg ctcaaaagcc ggggatcgat ttcaaggaat      2820
     catttgcacc ggttgcccgt tcgagctcga tccgagttat gctggcttta gcagctgagt      2880
     gcgagatgtc cgtacaccat ttcgatgtga cgacggcctt cctaaatggc aaacttgagg      2940
     aaaaggttta catggaagtc cccaaatacg ccatcgaagc actgcagcaa atcgcgggga      3000
     cttcatcaac taacgatgtg gtcagaaaga aagcgaccga tatgcttgaa caaattattc      3060
     aaggcgacaa ggtatgtctg ctcaagaggg cgttgtacgg tcttcgaccg gcaggtcgat      3120
     gctggaacgc ccgcatcgat cgcaaacttc tgaaatttgg agcaagaaaa accgcagctg      3180
     attcatgcat atacataagg ggcagcggag acaatattgt gatcatcgca gtctacgttg      3240
     atgatcttct aattgcatca aagaacgaag gacaagtcaa gaagctcgaa gaacatctcc      3300
     gcgaccaatt cgaaatcacc aaccgcgggc aagtgaaaca ttgtctcggg atggagtttt      3360
     ccatcaagcc aggggagata tccatcgtac agtcagcata catcagggat atactcgagc      3420
     gtttcggcat gtccgactgt aagctcgttt caaccccaat ggactcaggg gcatgtttga      3480
     tgacgtgcaa cgacgaagat aattcaagcg tcacatcact cccctatcga gagcttgtgg      3540
     gcgctctgat gtacctgtcg gtttccaccc gaccggacat ctcattcaca gtaagctatc      3600
     ttagccagtt ctgccataat tttaccaaaa accactgggt agcggcaaag cgcgtgctta      3660
     gatacctcaa ggggacggcg aatcttggcc tggtgtaccg caagtccggc agacccgccc      3720
     tcggctacgt ggactcagat tgggccaatt ggaccgtagg ttttactcgg ggtacgcatt      3780
     cctgctcaac gggtgtcctg taacttggga gtcccgcaaa cagcgcactg tagctctctc      3840
     atcaaccgaa gccgagtata tggcattgac cgaggctgtg aaggaaggac tacaccttaa      3900
     aagattcttg acggagctcg gtttcgacag cctaggtcga attcaaattc ggtgcgacaa      3960
     caacggagct aggaagctgg ccgagaatcc cgtttttcac gggagatcca aacatatcga      4020
     cgttcgacat cacttcgtta gagaggtcct gaagagcgga gaacttgagg tcgaatacac      4080
     tcccaccggc gacatggcgg ccgacgtact taccaaggga ttgcccaggg tcaaacatgg      4140
     gagatgtcta cgcaccctcg gaatgattac agaatgaggc acaaccgacg agtaatcgcc      4200
     gaatcgaggg gggggat                                                     4217
//
ID   Copia-4_LH-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   ADOQ01000967;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_LH_;
KW   Copia-4_LH-I; Copia-4_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-254
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000967; Positions    1464    1717.
XX
SQ   Sequence 254 BP; 51 A; 64 C; 61 G; 78 T; 0 other;
     tggagattga agtctcgcgc cgtggcgact cggcgctttt cgcggttaca gcataaccga        60
     gtttctctcg ggagagggcg cttgctctag tctgtcgtcg cgtgttcctc gtgcggacta       120
     ccttctcatt agatcgtaga tctcgtgcaa aaaggaccag agtctgtcgt gtacctttcg       180
     caaataaacg tgtgtatctc tgtgaatatc tgataaccga ttgtcttatt tcctttccct       240
     gcataactct aaca                                                         254
//
ID   Copia-4_LMi-I repbase;    DNA;    INV; 4114 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4114
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3079-3079 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(183..2687,2603..3196,3151..3732,3686..4072)
FT                 /product="Copia-4_LMi-I_1p"
FT                 /translation="MSSTGSSGLPVVEKLIGRENYSTWKFAMKAYLVHDEL
FT                 WDVVENPPSAPTQRDESWRKRDRKAHSRIILFVDKTNYSHIRDTNTAAEAW
FT                 TALEKAFEDSGLTRRVGLLRTLITTKLDKCKSVDDYCDRIITTAFKLNEMK
FT                 FAVSEEWIGTLLLAGLPDHYQPMIMALESSGTRITGDSIKVKLLXDVKLED
FT                 ANGNEESALYINRQSHSKRNIKCYKCNKPNHIAKYCSSKNEKGGXSSKNND
FT                 KGNVDKKQSEQKKAFLAADSTQFHKREMWYLDSCASTHITNDGRKLHNIKP
FT                 CNSSVVSVGGDGLRAETSGSIDLTFYTGDKTVEVEASDVIHIPNSAVNLLS
FT                 VSKIVSKGHKVTFNKKGGFIYDAEGELIAKASPKNGIYCLNTSEMKQCYYT
FT                 EGNGFLWHRRLGHMNRKSMLKLAKVSTGLNEDIVVKDPCELCIMGKQSRLP
FT                 FKCSKRHSEHILELVHSDLCGPMETASIGGNRYFITFIDDFSRYKFVYFLK
FT                 KKSEVTQIFKNFKVMVEKQTGRSIKKLRSDNGKEYVNGELKTFLSSEGIIH
FT                 QLTVRYSPQQNGVAERANRTLVEKARTMMFDANLPKEYWAEAVSTAAYISN
FT                 RSPSVTLGDKTPFEFWYGRKPSLSHMRIFGCSAMVYIPKPHRKKWDKKSQK
FT                 LTFLGYCQATKGYRFIDRETYKITISRDVNFLEDENCLSSRIEEPKNINII
FT                 ELEQDTDYNSHTEEDVKSVDSDDEPFYGFDSDSKETEAKDEGYENQNMDPL
FT                 VQQTVIPRRSSREPKPKEWRDYYTYYLQEGLPNENIDVKEALEGINMEEWR
FT                 KAMNKEFSSLVVITHLKRWSYPGDIILSRLSGFRIFISSRNNTFEEVELPR
FT                 GHNPLKTKWVLKIKPGTSSTPQIFKARLVVKGCSQTQGVDYQETYAPVVKY
FT                 ASIRYLLSMAARENLEIDHVDITTAYLYGDLNEEIYVIPPENFAAPGKVWR
FT                 LKKAVYGLKQAGRNWNQKIDEVLRNLKLTRSKTDPCIYFHRDDIKLIIIAL
FT                 YVDDMLLFSNDRSVLNQLKNSLKMFLRKCFESIKEFTKNVFEIKDLGPVNR
FT                 CLGMEITRNREKGKIWICQESYTRKVLEKFGMSEAKPVSTPLELGLDFETI
FT                 ESADISAPYQEAIGSLLYLSQISRPDICFAVNLLSRYNHCFKKAHWLSVKR
FT                 VFRYLKGTISYKLEFSKDGNTEIMAFSDADWGNKINGRYSVTGSCIKLQNS
FT                 LILWSSKKQKNCCTFYLFCGLVRNKKTVALSTCEAEYMALASTVQDLLWLR
FT                 QLMADIDPSSIRNSLKVCCDNKGAIQLAKNLVTNSRSKHIDVKYHFIRKHV
FT                 ESGVVSIEHLPSEDMLADAFTKPLSTARHETCVRNCGLVKYVKE"
XX
SQ   Sequence 4114 BP; 1437 A; 673 C; 890 G; 1109 T; 5 other;
     cnaaaggtta tgggcccagt tcccaggcgt gaatgctacg ttttataaat gttgaagaaa        60
     aaaagtcgtg cgtggaaatc cagagtcggt tcatcaatta cgtgtgcgcc gatgaatttt       120
     tattttgtta attgatcatt agcgtgtgta tactctgccg tttataggtt caggtcgaaa       180
     aaatgagtag cacaggctca tccggactcc ccgttgttga aaaactgatc gggcgagaaa       240
     attattcgac gtggaaattt gccatgaagg catatttagt tcatgacgaa ttatgggatg       300
     ttgtagaaaa tcctccttcg gctccgacac aacgggacga atcgtggaga aagagagaca       360
     gaaaagcaca ttcccggatt atactcttcg tggacaagac aaattattcc catataaggg       420
     acacaaatac ggcggcagaa gcttggacgg ccctggaaaa ggcatttgaa gactcaggac       480
     tcacacgtcg tgttggcttg cttagaacat tgatcacaac taaattagat aaatgcaagt       540
     cggtagacga ttactgcgat cgaatcataa cgaccgcgtt taagttaaat gaaatgaagt       600
     tcgcggtaag tgaagagtgg ataggaactt tactcctggc cggattacct gatcattatc       660
     aacctatgat tatggcactt gaaagcagtg gaacccgtat taccggagat tctatcaaag       720
     taaaactact asaagatgtc aaattagaag acgcgaacgg aaatgaagaa tctgcgttat       780
     atataaatag gcaaagtcac tcaaaacgaa atattaaatg ttacaagtgt aacaaaccga       840
     atcatattgc taaatattgt tctagcaaga acgaaaaagg aggaaamtcg tcaaaaaata       900
     acgataaagg aaatgtggat aaaaaacagt cagaacagaa gaaagcattt cttgcagcag       960
     attctacaca gtttcacaaa agagagatgt ggtatttaga ttcttgtgcc tcgactcaca      1020
     tcactaacga tggaaggaag cttcacaaca ttaaaccatg taatagctca gtggtcagcg      1080
     tgggaggtga tggcttaaga gcagaaacwt ctggtagtat tgacctgacc ttctacactg      1140
     gtgataaaac agtagaagta gaagcttctg atgtcattca cattccaaac tcagctgtga      1200
     acttgctttc agttagtaag attgtaagca aagggcataa agtgactttt aataagaaag      1260
     gtggattcat ttatgatgca gaaggtgagc taattgcaaa ggcatcgcct aagaatggta      1320
     tctattgctt gaacacaagt gaaatgaagc aatgttatta cactgaaggc aatggattcc      1380
     tatggcatcg tcggctagga catatgaatc gcaaaagtat gttgaagttg gcaaaggtct      1440
     caacgggatt aaatgaagat attgtggtca aggacccatg tgaattgtgt attatgggaa      1500
     aacagtcacg tcttccgttc aaatgtagca aaagacattc tgaacacatc ttggagctag      1560
     tacattctga tttgtgtggt ccaatggaaa cagcatctat tggtggaaat cgttatttta      1620
     ttacatttat tgatgatttt tctagatata agtttgtcta ttttttgaag aaaaagtctg      1680
     aggtgacaca gatatttaaa aacttcaaag tcatggtgga aaagcagaca ggcagaagca      1740
     taaaaaagtt gcggtctgac aatggaaagg agtatgtcaa tggtgaactg aaaacatttt      1800
     tgagttctga aggtatcatc catcagctta cagtacgata cagtccacag caaaatggtg      1860
     ttgctgagag agcaaatcga acattggttg aaaaagcacg taccatgatg tttgatgcca      1920
     acttaccaaa agagtactgg gctgaagctg tgtctacagc tgcatacata tcaaatcgtt      1980
     ctccatctgt cacacttgga gataaaacac catttgaatt ttggtacggg agaaagcctt      2040
     ctttatcaca catgagaatt tttggctgta gtgcaatggt ttacatccca aaaccccatc      2100
     gcaaaaaatg ggataagaaa tcacagaagt tgacattcct aggatactgc caagcaacaa      2160
     aaggctaccg gttcattgat agagagactt acaagataac tatcagcaga gatgtaaatt      2220
     tcctggaaga tgagaactgt ctgagttcaa ggattgagga acctaagaac atcaacataa      2280
     tagagttgga gcaagataca gattacaatt cacatactga agaagacgtt aaatcagtag      2340
     acagtgatga tgaacctttt tatggttttg acagtgattc aaaggaaaca gaagcaaaag      2400
     atgagggata tgaaaaccaa aatatggatc ctttagttca acagacggtt atacctcgaa      2460
     ggtcaagcag agaaccaaaa cctaaggaat ggcgggacta ttatacatac tacttgcaag      2520
     aaggacttcc aaatgaaaac attgatgtca aggaggcttt ggaagggata aatatggaag      2580
     aatggagaaa agcaatgaat aaagaatttt catctctagt cgtaataaca catttgaaga      2640
     ggtggagcta cccaggggac ataatcctct caagactaag tgggttttaa aaataaaacc      2700
     tggaactagc agtaccccac aaatatttaa ggcgcgttta gtggtaaaag ggtgctctca      2760
     aacacaaggt gttgactatc aggaaaccta cgcaccagtg gtcaagtatg catcmatcag      2820
     atatctactg tctatggcag ctcgagagaa cctggagatt gatcatgttg atatcaccac      2880
     tgcctatctc tatggagact taaatgaaga aatttatgta attccaccag aaaattttgc      2940
     agctcccggg aaagtatgga ggttaaagaa agctgtttat ggacttaagc aggctggtcg      3000
     gaattggaat caaaaaattg atgaggtgct aagaaaccta aaactgacca gatcaaaaac      3060
     tgatccgtgt atttattttc atagagatga catcaaacta atcattattg ctttatatgt      3120
     agatgatatg ctattgttct caaatgatag aagtgttttg aatcaattaa agaattcact      3180
     aaaaatgttt ttgagataaa agacttagga ccagtgaatc gatgcctagg tatggaaatt      3240
     acacgaaatc gtgaaaaggg aaaaatttgg atttgccagg aatcttacac tagaaaagtt      3300
     ctggagaaat ttggaatgag tgaagccaag ccagtgtcaa caccactcga acttggtttg      3360
     gactttgaaa caattgaatc agctgacatc agtgctcctt atcaggaagc tataggaagt      3420
     cttctatatc tgtcccaaat ctccagacct gacatatgtt ttgctgtaaa tctccttagc      3480
     agatataatc actgttttaa aaaggctcat tggttatcag taaaaagagt gtttagatat      3540
     ttgaaaggaa caatatctta taagctagaa ttttctaaag atggaaatac agaaataatg      3600
     gccttcagtg atgcagattg gggaaataaa atcaatggca gatactctgt aactggttca      3660
     tgcataaaat tacaaaactc tttaattttg tggtctagta agaaacaaaa aaactgttgc      3720
     actttctact tgtgaggcag aatatatggc tttggcttca actgttcaag atttattgtg      3780
     gttaaggcaa ctaatggctg atatagaccc aagtagtatc agaaattcac ttaaagtatg      3840
     ttgtgacaac aaaggagcca ttcagttagc caagaatcta gtgacaaatt ctagatcaaa      3900
     gcatatagat gtaaaatatc attttataag aaagcatgtg gaatcaggtg ttgttagcat      3960
     tgaacatcta ccttctgaag atatgttagc tgatgctttt accaaacccc taagtactgc      4020
     aagacatgaa acctgtgtaa gaaattgtgg tcttgtgaaa tatgtgaagg agtgactcta      4080
     cacaatatag tgttaatatc aatttaaggg gaca                                  4114
//
ID   Copia-4_LMi-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-178
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3080-3080 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 178 BP; 45 A; 24 C; 32 G; 77 T; 0 other;
     tgttgggata tgtaaattga tattgccact gtttactctt tgtgattagt agtactctgt        60
     gtttaattaa ttacgttttg tctgtgatgt gtgtgtgtct tctgtgttgt gcacgaacta       120
     atttaataaa acgtattttc acgtattttt ccactagttg tacaaaaatt actcaaca         178
//
ID   Copia-4_RPr-I repbase;    DNA;    INV; 3983 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Copia LTR retrotransposon, internal region: consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3983
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3425-3425 (2015).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..3953
FT                 /product="Copia-4_RPr-I_1p"
FT                 /translation="MDFKVNIGNLEGKVNWASWKYKVLILLRTVPNGEAVI
FT                 KGELIKPAELPPNSTDPQVSEYNKILETYINADTKAMLILTTNMTEETLTK
FT                 VMRFTSAREIWLELHRLYEGVTEDKTFDLCMQFFTYKFNAEDDMANHLSKI
FT                 KNIWNXLNIQLSEGVEVKNLPDILLICKILETLPNQYFAFKSSWLLMPKSE
FT                 RTVENLTSQLCAHERALSGATNHAKSSDSEEALAVSKGKYKSKFICHYCGK
FT                 AGHVITRCLKWKKDGRPPKDKSLPASVNNMVLHATDSEVFSAACDEDNWFV
FT                 DNGATNHVSNNKSLFKSIKAFNIPHKVTTANGSSVPAIGVGDIVVNTNGIQ
FT                 KQITFSNVWYVPEMSKNLFSVLSAQDKIPDSKFISTAERCHFQVNNKNILT
FT                 GSRVRNGGLYKLHLSNVNHVCSISTNENILQLYHERFAHQNKRHVKGVIER
FT                 ELGIKITVDSEICEGCVYGKHHRLKFGKRERATVPGEIIHADVCGPFEASY
FT                 SGFRYYVLFKDDFSRFRYIYFIKEKSEVYEKFLSMLKECERAGHKVQSFLS
FT                 DNGGEFDNSKMKKILNEHGIKQLLTMPYCSEMNGYIERDNRVVVEAARAML
FT                 HAHENLPQALWAELTNTAVYIINRTGPTTIEDKTPYELWLGRKASLKHLRI
FT                 IGSECYAHIPKQKRSKMDKKAIKGILVGYDFGGYRIWSKTRWIIRSRDVIF
FT                 NEKPLKTETLISFPDMKEEPNPKEVLEPIDDEDPHKSSDQEKVEDLKMTLR
FT                 DRGNIKPPGRYEEYVSFIMTETSDTPETYDDAIRSKDSKNWRQAMDVEMKA
FT                 LRDNNTWVLQDLPVDKKALPCKWTYKIKQNPDGTIERYKARLVVKGFSQQK
FT                 GVNYNETFSPVAKMSTIRSILSVAASKRMSLVQFDISTAFLYGDLYEGEEI
FT                 YIEQPEGYNNGTSEVCKLKKSLYGLKQSARCWYKRFVDFLKKLGFTSSSAD
FT                 PCLFIRKRGENQLYIALYVDDGLVASTNNIELDDFLKALQTEFKVSHKNLS
FT                 YFLGLEISQEDNGTIKIDQKSYTRRILKRFGMDNCRAVSTPIIDPSQNRSV
FT                 PKEDNGFPYRQAVGALMYLMVSTRPDIAFAVGVASRALENPTADDILRVKR
FT                 IFRYLKGSEELGIVYRPEEDSSFLECYSDADLGGDADTGRSTSGIISKYAG
FT                 GAISWSSQRQTSVAISTTEAELVAASEAAREMVWLRRLLDELGGLRITPNL
FT                 YVDNEAAIKLAKNPEMHRRTKHIRIRHFFVREVVEEGAINIQPISTEKQLA
FT                 DMLTKALNKPKLLNFLRESGLR"
XX
SQ   Sequence 3983 BP; 1368 A; 776 C; 860 G; 978 T; 1 other;
     ggttatgggc tcagtaatgc aaaagtgata aaggtgaact ttgattgctt ttctttgtgg        60
     ttagattcct tgttatttac cgaagtttat tttttatcgg aaacatggat ttcaaagtga       120
     acattggtaa tctggaagga aaagtcaact gggcttcatg gaagtacaaa gtacttatcc       180
     tattgaggac cgttcctaac ggagaagcag tcataaaagg tgaattaata aaacccgctg       240
     aacttccacc caatagcacc gatccacaag taagtgaata caacaaaata ctagaaacat       300
     atattaatgc agacactaaa gcaatgttga ttttaacgac aaacatgaca gaagaaactc       360
     ttacaaaagt aatgagattt acttcagctc gagaaatatg gttggagctg cacagactct       420
     atgaaggggt taccgaggac aaaacctttg atttatgcat gcaatttttc acttacaaat       480
     ttaatgccga agatgacatg gcaaatcatt tgtcaaaaat taaaaacatt tggaacwacc       540
     ttaacatcca gctgtcagaa ggtgtagaag tcaaaaatct acctgacatt ctacttatct       600
     gcaaaatttt agagacacta cctaaccaat acttcgcgtt taagtctagc tggcttctta       660
     tgccaaagag cgaacgaaca gttgaaaatc tgactagtca gctgtgcgca catgagagag       720
     cgttatcagg cgcgacgaat cacgccaaga gttcggactc agaagaggcc cttgctgtgt       780
     caaaaggtaa atataaatct aaatttatct gtcactactg tggtaaggca ggacacgtta       840
     taacgagatg tctcaaatgg aaaaaggatg gcagacctcc caaagacaag tccttacccg       900
     cttccgtcaa taacatggta ttacacgcca ccgacagtga ggtattctct gctgcatgtg       960
     acgaagataa ttggttcgta gacaacggcg ccacaaacca tgtgagcaat aataaatctt      1020
     tattcaagtc cataaaggca ttcaatatcc cccataaggt aacaacagcg aatggttcta      1080
     gtgtaccagc tataggtgta ggcgatatcg ttgtcaatac aaacggcata cagaagcaaa      1140
     taacattttc taatgtctgg tatgtgccgg aaatgagcaa aaatttattc tccgttttat      1200
     ctgcacagga taagattcct gatagcaaat ttatttctac agcggaaaga tgccactttc      1260
     aagttaataa taaaaacatt cttaccggct ccagagttcg aaatggagga ttatataaat      1320
     tgcatctatc caatgttaac cacgtctgtt ccatatcaac caatgaaaat attttgcagc      1380
     tttatcatga acgcttcgca catcagaata aaaggcatgt caagggcgtc attgaaagag      1440
     aactaggaat caaaataaca gtggattctg agatctgcga aggttgtgtc tatggcaaac      1500
     atcatagatt aaaattcgga aaaagggaga gagctacagt accaggtgaa atcatccacg      1560
     ctgatgtatg cggcccattc gaagcatcat attcaggttt tcgttattac gtactattta      1620
     aagacgattt ttcgagattt cgatacatct atttcattaa agaaaaatct gaagtttatg      1680
     aaaagtttct ctcgatgttg aaagaatgcg agcgtgcagg acataaggta cagtcttttc      1740
     tcagcgacaa cggaggagag tttgacaact caaaaatgaa gaaaattcta aacgagcatg      1800
     gtattaaaca gcttctcaca atgccctatt gtagcgaaat gaacggctac atcgaaagag      1860
     acaaccgtgt ggttgtagag gcagctcgag cgatgttaca cgctcacgaa aatttgcctc      1920
     aagcattatg ggccgagtta actaatacag ccgtttatat tataaacaga acaggcccaa      1980
     ctaccattga ggacaagact ccttatgaac tatggcttgg aaggaaagca agcctaaaac      2040
     atttaaggat aatcggaagc gaatgttacg ctcacatacc caaacaaaaa agaagtaaaa      2100
     tggacaaaaa agcaattaaa ggcattctgg tcggatatga ctttggtgga tacagaatat      2160
     ggagcaagac caggtggatt ataagatcca gagacgtgat cttcaatgaa aaaccattaa      2220
     aaacggaaac gttgatttct ttcccagata tgaaggaaga accaaatcca aaagaagtac      2280
     ttgaaccaat cgatgatgaa gatccccata aatccagcga ccaagaaaaa gttgaagact      2340
     taaagatgac tctgagagat aggggcaaca tcaaaccccc tgggcgatac gaagagtatg      2400
     tatcatttat catgacggag acttccgaca ctccagagac atacgatgac gccataaggt      2460
     caaaggactc taagaattgg cgacaggcca tggatgttga aatgaaggca ttgagagaca      2520
     acaatacctg ggtgcttcag gatcttcctg tggacaagaa agctctacct tgcaaatgga      2580
     catataaaat taaacagaac cctgacggaa ctattgaaag atataaagca agactagtag      2640
     tcaagggatt ttctcaacag aaaggggtaa attataatga aacatttagc cccgttgcaa      2700
     aaatgagcac aataagatcc atcttaagtg ttgctgccag caaaaggatg tcacttgttc      2760
     aattcgatat atctacagcc tttctctatg gagaccttta cgagggcgaa gagatttata      2820
     tcgaacaacc tgaaggatac aataacggga caagcgaagt ttgtaaactt aaaaagagct      2880
     tgtatggctt gaagcaatcg gcaagatgtt ggtataagag gttcgtagat ttcttaaaga      2940
     agttaggatt cacttcaagc agtgccgatc cctgtttatt tataagaaaa aggggcgaaa      3000
     atcaacttta catcgctctc tacgtcgacg atggccttgt tgcttcaacc aataacattg      3060
     aattggatga cttcctaaag gctctacaaa ctgaatttaa agtaagtcat aagaatttat      3120
     cttactttct cggactggaa atatcccaag aagataacgg tacgatcaaa atagaccaaa      3180
     agagctacac aagaagaatc ctgaaaagat ttggaatgga caactgcagg gcagtgtcaa      3240
     cgccgatcat cgatccttca caaaatagat ccgtaccaaa ggaagataat gggtttccat      3300
     atcgccaggc cgtgggcgca ctgatgtacc taatggtctc aacaagaccg gatattgcgt      3360
     tcgccgtggg cgttgcgtcg cgtgcactgg aaaacccaac tgctgacgac atactacgag      3420
     tcaaaagaat attccgatac ctaaaaggat cagaggaact tggaattgtt tatagaccgg      3480
     aagaagattc aagtttcctc gaatgttaca gtgacgcaga ccttggtgga gacgccgata      3540
     ccggacgttc tacatcaggc attatatcca agtacgccgg aggagcgatc tcatggtcta      3600
     gtcagagaca gacaagcgtc gccatctcca ctactgaggc ggaacttgtg gctgcgagtg      3660
     aggctgcacg cgaaatggtt tggctgagga gacttctcga tgagctcggc ggtcttcgaa      3720
     tcacaccaaa tctgtacgtg gacaatgagg cggctataaa actggcgaaa aacccagaaa      3780
     tgcatcgacg taccaaacat atacgtataa gacatttctt tgtgagagaa gtcgtagaag      3840
     aaggagccat aaacatccaa ccgatatcaa cagagaaaca gctggcagat atgctgacca      3900
     aggctctcaa caaaccgaag ctgttgaatt ttctgcgcga gagtgggttg cggtaaccaa      3960
     agtgcatatt caatgagggc gag                                              3983
//
ID   Copia-4_RPr-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Copia LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-148
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3426-3426 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 232 BP; 64 A; 39 C; 33 G; 96 T; 0 other;
     tgttagatat agacatgtga actatgcact ttatattctt ttatatttgt acattttctt        60
     atatatactc actgtatacc acataatgtt ttcccagtgg caacactgat tgtctcgttg       120
     gagcgctttt tggctaacac ctgtttttaa taaaaatata gttgaatatg gccgactggc       180
     acgcttcatg tattttgtgt atttttaata tatttaaccc atttatccaa ta               232
//
ID   Copia-4_SI-I repbase;    DNA;    INV; 4115 BP.
XX
AC   AEAQ01007866;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_SI_;
KW   Copia-4_SI-LTR; Copia-4_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01007866; Positions    4572     458.
XX
CC   Positions [436-933] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           400..2019
FT                 /product="Copia-4_SI-I_1p"
FT                 /translation="MSKLIQKPHNIKVTKKPLELIYLDLCGLMPTNSIKGS
FT                 RYMLVIVDDYSGMYFVYFLKHKSEAFDHFMEFQKKFENRLETKIKSIRTDN
FT                 GREFINENFRKYLNESRISHQKTVPFNPQSNGKMERANRVLLDRARTILND
FT                 NKLPSEFWAEAVATACHVSNITPRKGKDNTPFESFFGHKPSLEHLKVFGCV
FT                 AFFYVPKQHRDKLELRGKIGIMVGYAKSRTGYHIYDIKNQKIVEERTAKFH
FT                 ENTMGYTLLKTKESFDEQFKNFDVESLFKETNEELVEDIDEIHEHDVDARS
FT                 DYDSDIIDDVDELPQSIDVNEKRREKPEGTTKAVMQSRLSEQQRNRKAKLL
FT                 KYGVRRSKRIADKSNDKVPRNDSNIFETNKTSTEIVPSNFKDAKESREWIN
FT                 WYKAMKDEIESLNYHNVWEVIDKVPGVKVIKSKWVYSIKNNPENKTKKYKA
FT                 RLVAAGFNQIKYKDYEESYSPVVTIETWRLLLSVAAKRDMRVRFYDVKTAY
FT                 LYGSIDETVYMTAPPGFKKTIGLDKICRLQKKYIWIATIWAQLV"
XX
SQ   Sequence 4115 BP; 1546 A; 657 C; 849 G; 1063 T; 0 other;
     atagtagatt cgaaattgat gataaatatg gcaccaatgt atgtctgaaa gatactctgt        60
     acgtaccgga attaagaaat aatttgcttt ccgtaagaaa atgagatgaa ataggctata       120
     aaataacgtt cggtaatgag ttagcattaa tttacgatag cgatagaaaa attgtaggta       180
     aaggaattaa agacggatca aagtatatta taaaaggcaa aactacaaat gacgtgtgtt       240
     tcatgggcac aaagaataca gggaacatga gtaacaaaat gctatggcgc aagcgattga       300
     cacttaagtt ctaaatatac taacagacta gttaaagaat cactcgttga aaatgcgcat       360
     aatattccaa aaaatgaagt cgaatgcgag tcatgtagta tgtcaaaatt aatacaaaag       420
     ccacataata ttaaagttac aaagaaacca ttagagttaa tatatcttga tttatgcgga       480
     cttatgccaa cgaattcaat taaaggttct cgatatatgt tagtgatagt agacgattat       540
     tcgggcatgt attttgtata cttccttaaa cataaaagtg aggcattcga tcattttatg       600
     gaattccaga aaaaatttga aaatagacta gaaactaaaa ttaaaagtat taggaccgat       660
     aatggtcgag aatttatcaa tgagaatttt cgcaagtact taaatgaatc aaggattagt       720
     catcaaaaaa cagtaccatt taatccacag agcaacggaa aaatggaaag agcgaatcgc       780
     gttttgttag acagagcacg caccatacta aacgataata aattgccttc tgaattttgg       840
     gcagaagcag tggcaacagc gtgtcacgta tcgaatataa ctcctagaaa agggaaggat       900
     aatactccgt ttgaatcatt ttttggccat aagccatcat tagaacactt gaaagtattt       960
     ggttgcgttg cattttttta tgtgcctaaa cagcatcgtg ataagttaga actaagaggt      1020
     aaaattggaa taatggtagg atacgctaaa agtcgtacgg gatatcacat ctacgatatt      1080
     aaaaatcaaa agatagtcga agaacgaaca gccaagtttc atgaaaatac tatgggttat      1140
     acgctactta aaactaaaga atcatttgat gaacaattta agaattttga tgttgagtca      1200
     ttatttaaag aaacaaatga agaattagtt gaggacatag atgaaataca tgagcatgat      1260
     gtagatgcga gatccgacta cgattcagat ataatagatg acgtagatga gctacctcaa      1320
     agtatagacg taaacgaaaa acgaagggaa aagccagaag ggacaacgaa agcggtaatg      1380
     caatctcgat tatctgagca acaacgcaat cgtaaggcaa aactattgaa atatggtgtc      1440
     cgtagatcta agcgaatcgc tgataaaagt aatgacaagg tacctagaaa cgatagtaat      1500
     atttttgaga ctaacaaaac aagtactgaa atagttccta gtaactttaa agatgcaaag      1560
     gaaagtagag agtggataaa ttggtataaa gccatgaaag atgaaataga gtcattgaat      1620
     tatcataatg tatgggaagt tattgacaaa gtaccagggg taaaagttat aaaaagtaaa      1680
     tgggtctatt ctattaaaaa taatcctgaa aacaaaacta aaaaatataa ggcgcgatta      1740
     gtggcagcag gatttaatca aataaaatat aaagattatg aagagtcata ttcccccgta      1800
     gtaacaattg agacatggag attgctgttg agcgttgcag ctaaacgaga tatgcgtgtg      1860
     agattctatg atgtaaagac agcgtacctg tacggatcca ttgacgaaac tgtatatatg      1920
     acggcacccc caggattcaa aaaaacaatt ggtcttgata aaatatgtag attgcaaaaa      1980
     aagtatatat ggattgccac aatctgggcg caattggttt aaacgactcc gtaaagaatt      2040
     gttaaattta ggccttaaac aattagccag caataattgt attttcatac ataacagagg      2100
     taatacatat attcctatgc gtgagcgtct atgtcgatct atctattatt gataacaaca      2160
     caaaggcagg tgacatgctc gtagaaaata tacgtaaagt atttaaactt aacgaaacca      2220
     caaataaagg tatattttta ggcatggaaa ttaaagagac cgaaaaagaa ataacgataa      2280
     ctcatgaggg gtatattaaa acattgctag aaaaatacgg tatattacat tgtaaaccag      2340
     taagtacgcc aatagtacca ggacaggata aagagcccga ttcacctgat gatattgttg      2400
     agccaaaagg ctaccaagag ataataagag aattacttta tttaagtaac agatctaggc      2460
     cagacattac attcgcgaca aattacttat cacaattcaa tgtacggcca gagaagcgtc      2520
     actatgtaat ggccaaaaga atttcacgtt acttatcagg cattttgaat tataagctcc      2580
     gttatagtcg aaaacaaggc agattgaaca cgagtagtga tgcaagtgga gaaatgggat      2640
     ctaaaatgaa tgggactaaa atgaaatctt tttcgggtgg cgtcctccaa ttagaaaaat      2700
     cgcttataat gtggaactgt cgtaaacaga aatgtgtagc ggattctacg tgtgaggcag      2760
     aattgtttgc aattaacgat gtaattaaaa atgtaaaatg actaatagga ttattatcgg      2820
     agctcggctt cgaaacactt tataaactac ctgtgtgtat agcaagcaat aatcaatcgg      2880
     cgatagacgt actcaaagac gcgaagtcat cacgtagata acgccatgtt ttactaaagt      2940
     cacaatacat taaagatgag attgccgagg ggcgtgttta tgtatcttaa tgtatgttaa      3000
     tactgatttt atgaaagcgg attttttgac caaagctgta accaaagaaa aacttgtgtg      3060
     gagttgtaaa gaactgaatc tatattaatt gttccaaaaa aaaatgataa agtttgtgtg      3120
     tttatatatg tcggttattt tataaaatta tacaattcca cgcaggtggg gaaatgtgga      3180
     gttttgcgta ctcattgtat taattttagt tagttcgttt ataagaggtt ggtagaccta      3240
     gtacatttat gttatgcgag ttccgatctg actagattta taccctatgt tcatgtctca      3300
     tggcgcgctg ttcttcccgc gtaccctctc ttctgctgta agccgccaga cgacacacac      3360
     cttcgcccgt ttgtaataaa gctatcttat tttcatacgc atctatcgga gattctctca      3420
     ttataaccca acaaagtggt agcagagcgt ggttcgtgca atcagaagct gctgagagca      3480
     aaagccgaaa aataagaaaa ttcagcgacc gaggtaagaa gcggccacgt ggaaagaaag      3540
     aaaatggata agatacctat gagtaatatc ccacaactca cggcgacaaa ttattacgta      3600
     tgggccatga aagtagaagc cgtgttaggc ctaaaaaagg ttagatacgt tctcacgacc      3660
     gatcgacctg taaacgacaa agaccgcgag agatgggaca gcgataacga cgtcgtgtcc      3720
     atcataaagc taaccttgtc cgacgaccag gcaatgcagt tcgcggatga attccacgca      3780
     aggcaactat ggctgaaaat aaaggaaacc tacgttggac gcctcgaaga ctcgaaaatc      3840
     gacgccacag tcaagttacg tagcatcaca atgaaagaca aggaaacagc agcagactac      3900
     gtggcacgtg cacaaggcct agcatcaaag tgcaaaggac tgaacgtcaa catcacagat      3960
     cgcgagctcg tgtactacgt cgtgagagga ttaaatggca aattcagtcg aataaggaac      4020
     acacttaaga cgcaacaaga caagagactc aacgacgtac tagaagactt acgagaggaa      4080
     gaaagagaga taaatactca aaagaagagc aacga                                 4115
//
ID   Copia-4_SI-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   AEAQ01007866;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_SI_;
KW   Copia-4_SI-I; Copia-4_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-438
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01007866; Positions     457      20.
XX
SQ   Sequence 438 BP; 157 A; 82 C; 117 G; 82 T; 0 other;
     tgcggcttac gcaacgagag aagaaaagcg ttacggtaaa agtgccacgt atgcaaaaaa        60
     ccaggacacg tggcgaaggt gtgctggcac cgaagatcca acgatgatgg cgacaagaaa       120
     gatcgaccag acaaaaagcg cacgaattag cgcagtgaca ctcgatctca aggccgttcg       180
     caacagagtc gtcaggaggg acgcaatgat aagagtgaga aagctaacaa agccaccgac       240
     gactacgcgt tcgaggcatg cgacgaagag tgtgcgagcg atggcgacag ttacataata       300
     agttggattc tagatagcgg ttgtaacagc catatgataa aaaaaaattt gtaattgatg       360
     attttaatca cataaatggt aatgttctat tggccggtaa aggaaatgta acgaaatcag       420
     aaggaatagg ctcaatca                                                     438
//
ID   Copia-4_TrVa-I repbase;    DNA;    INV; 4075 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-4_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4075
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 242-242 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           191..4072
FT                 /product="Copia-4_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MESAEKTRLPLFTGNNFDDWKYRIRLCLDERDLLRFI
FT                 ETPLVDILAYLSEDVQRIITKDAKKCKSLLAQCISDQYLEYIKDKETPYDI
FT                 FTALKSVFERKGVLSQLYCRKAILSLKYENGSLATHFLIFDKLIRNLKDAG
FT                 ATLSENDVVCHLLLTLPATFDPIITALETVEDARLTIHYVKGKLLDHELKN
FT                 GQVEPENQDSAFSSTNSKNTFNFKCNFCGEKGHKWMYCRKRKDSFKKNKTA
FT                 NVCQHVECDSSLTSDEEEIAFLSDSSSILTQASKWYLDSGASDHMTNNLQL
FT                 FYSFKKLNVPIKIAIAKENQSLTATHVGTIKVRSKSQKFSIENVLYVPDLR
FT                 CNLFSVKRVEEKRNKAGAPIFKIVFFDGQVQILKNDEVFVSGTRTGKLYEL
FT                 TFPVPTFHQSSALSAMSNVELWHKRLGHLSNTNMSKLISKNMVEGLDISVH
FT                 DIKNEIAKSSICDTCVFGKHAKKPFELKTSKTSNKPLDLIHTDVCGPINPA
FT                 TYNNKKYFVTFIDDFSHFTMIFLLAHRSEILEVFKNFEAQVTAQFNRKISR
FT                 LRCDNAGEYTSSAFTSFCKDKGIQVETTLPYTPQQNGIAERMNRTLLEKAR
FT                 CMLSDSSLPKYLWGEAILSAAYLLNRSPTSALTDDKTPAEIWFGRKPDLSN
FT                 LRVFGCEAFIKIQAPDSKFAPRSSKGYFVGYNKNGYRLWSANKVVVSRNVI
FT                 FNEAPTMKKNESTDLLFETNDNTESIEEGHPEEQELEKPQTDENAEKAPLR
FT                 RSQRERKPPVRYGIDEYATLALHTSAYLDDVPETFNQARNSPEKEHWRLAM
FT                 EDEMDSLKKNETWTLVDAPEGKNIVDCKWVFKKKPIDENKVKFKARLVAKG
FT                 FSQIKYLDYLETFAPVVKLVTIRLLLVAALLKKFKLHQLDVKTAFLNGYIT
FT                 EDLYMKQPKGFIDPIFPSRVCKLQRSLYGLKQAPRAWNERFNEFILKIGFV
FT                 RSQNDYCLYFKVSERSEIYLIVYVDDIVLTGNDEKEIAKIKTELLSEFEMQ
FT                 DMGPLKNFLGLNISIQSNCLKIQQKSYILKLLEKFKMLDCNPAETPIEVNL
FT                 QLEKANNQEEPLYRNLVGSILFLAMGSRPDLSFAINFFSQYQNYSTEIHFK
FT                 YLKRVLRYLKGTIDLGLVYSMPPPNTDSLTGYADADWGSDHLDRKSISGNV
FT                 FKVFGCTVSWSTKKQPTVSLSSTEAEFIALSFAARETLWLMKLLKDMNINP
FT                 ENVKIFEDNQSCIQISKNPTEHQRLKHLDIKHSFIRECVHSNFFTVCYISS
FT                 KEQIADILTKALPPNQFKILRKKLGVFNCMIEG"
XX
SQ   Sequence 4075 BP; 1369 A; 746 C; 781 G; 1179 T; 0 other;
     ggttatgggc tcagcccgaa aaaataacgt ttttaattgt agttgcggta aattaatggc        60
     attacgttgc gtttgctgac agttagaagt ggtgaggtta cagttttttt cttggtgagt       120
     tagaatacgt ttgttttttc tttaaagtat ttgttgaaat cggtattcaa ctcaagtgaa       180
     gtaacctcaa atggagtcag ctgagaaaac gcggttgccg ttgtttacgg gcaataactt       240
     cgacgattgg aagtatcgta ttcgactttg tttagatgaa agggacttgc ttcgatttat       300
     cgaaacgcca ttggtagaca ttttagctta tctttctgag gacgtgcaaa gaattataac       360
     gaaggatgct aaaaaatgta agtcactgct tgcacaatgt atttctgatc aatacttaga       420
     gtatattaaa gataaggaga cgccgtacga catttttact gcacttaaaa gcgtctttga       480
     acggaaagga gtactttctc aactgtattg tcgaaaagct atcctgagtc taaagtatga       540
     aaatggttca ttagccaccc atttccttat ttttgataag cttattcgaa atttgaagga       600
     tgctggtgcc accttatcag aaaacgacgt cgtgtgtcat cttctcttga cacttcctgc       660
     tacttttgac cctattatta ccgcgctcga aacagttgaa gacgctagat taactattca       720
     ttatgtgaaa ggaaaattac ttgatcacga attgaaaaat ggtcaagtgg agccagaaaa       780
     tcaagatagt gccttcagta gtaccaatag taaaaatacc ttcaatttta agtgcaactt       840
     ttgcggtgaa aaagggcaca agtggatgta ttgtaggaag agaaaagact cttttaaaaa       900
     aaataaaact gctaatgtat gtcaacatgt tgaatgcgac tcttccttaa ctagtgacga       960
     agaagagatc gcatttcttt ctgattcttc atcaattctg acgcaagcat caaaatggta      1020
     tcttgactcg ggtgcatcag atcatatgac gaataattta caactatttt attcatttaa      1080
     aaaactgaat gtgcctatta aaatagctat tgctaaagaa aatcagtcct taacagccac      1140
     tcacgttggg acaatcaaag ttcgatcgaa aagtcaaaag ttctcaattg aaaacgttct      1200
     gtatgtacca gatttgaggt gcaatctttt ttcagtgaaa agggttgaag aaaaacgaaa      1260
     taaagctgga gcaccgatct tcaaaatcgt gttttttgac ggacaagttc aaattttaaa      1320
     gaacgatgaa gtatttgtct ctggtacacg tacagggaag ctgtatgaac tgaccttccc      1380
     tgtgcccaca ttccaccaat caagtgccct ctctgcgatg tcaaacgtgg aattatggca      1440
     caaacgttta gggcacctaa gtaacactaa catgagtaaa ctgatatcaa agaacatggt      1500
     tgagggacta gatatctccg ttcatgacat caaaaatgaa atcgcaaaat cttcaatttg      1560
     tgacacttgt gtttttggta aacatgccaa aaaacctttt gaacttaaaa cgtcaaaaac      1620
     ctcaaataaa ccattagatc ttattcatac agacgtttgc ggccctataa acccagctac      1680
     ctataataat aaaaaatatt ttgtcacttt tattgacgat ttttcccatt ttacgatgat      1740
     ctttttactg gcgcacagaa gtgaaatttt ggaagttttc aaaaattttg aagctcaagt      1800
     gacagcacag tttaatagga aaatttccag attacggtgt gacaatgcag gggaatacac      1860
     ctcgtctgct ttcacttcat tttgtaagga caaaggaatt caagttgaaa caacgttacc      1920
     ctacactcct caacaaaatg gcatcgcgga acgtatgaat agaactttgc ttgaaaaagc      1980
     acgatgtatg ttatccgact cgtccttacc aaaatactta tggggagaag ctattctgtc      2040
     agcggcatat cttctcaata ggtcacctac gtcggcgcta acagacgaca aaactcctgc      2100
     cgaaatctgg tttggacgaa aaccagattt atcaaatctt cgagtttttg gatgtgaagc      2160
     cttcataaaa attcaagccc ctgatagtaa atttgctccc agaagttcaa aaggctactt      2220
     tgttggttac aataaaaatg gttacagact ttggtcagca aataaagtgg ttgtatcaag      2280
     aaatgttata tttaatgaag cacctaccat gaagaagaat gaatcgactg atttgctttt      2340
     tgaaactaac gataacacag aatcaataga agagggacac cccgaagaac aggaacttga      2400
     aaaacctcaa acagatgaaa atgcagaaaa agctccattg agaagatctc aacgagagcg      2460
     aaaacctcca gttcgctatg gcatagacga atacgcaact ttagctttac acacaagtgc      2520
     atacttggac gatgttccgg aaactttcaa tcaagcccga aatagtccgg aaaaagaaca      2580
     ctggagactc gcaatggaag atgaaatgga ctctctcaag aaaaacgaaa catggactct      2640
     cgttgacgca ccggaaggaa aaaatattgt tgactgcaaa tgggtcttca aaaagaaacc      2700
     tatcgatgaa aacaaggtta aattcaaagc tcggctcgtc gccaaaggct tcagtcaaat      2760
     aaaatactta gactacttag aaacctttgc cccagttgtt aaattagtaa ctatccgact      2820
     tctcttagtc gctgctttac taaaaaaatt caaattgcac caactagatg tgaaaacagc      2880
     gttcttaaat gggtacatca ccgaagatct ctacatgaaa caacccaaag gtttcatcga      2940
     tccgattttt ccttcgcgtg tatgcaaact tcagcgttct ctctacggat taaaacaggc      3000
     tccaagagct tggaatgaaa gatttaacga attcattcta aaaattggtt ttgtcagatc      3060
     acaaaacgat tactgtcttt attttaaagt ttcagaacgt tcagaaattt atttgattgt      3120
     ttatgttgat gacattgttc taacagggaa tgacgaaaaa gagattgcaa aaataaaaac      3180
     agagttactc agtgaatttg aaatgcaaga catgggtcca ctgaagaact ttcttggttt      3240
     aaatatttca attcagtcaa attgtctgaa aattcaacaa aaatcataca tcttaaaatt      3300
     attggaaaaa ttcaaaatgt tagactgtaa tcctgcggag acgccaatcg aagttaattt      3360
     acaactggaa aaggctaaca accaagaaga gccgctttat aggaatctgg ttggtagcat      3420
     tttatttctt gctatgggat caagaccgga tttaagcttt gccatcaact ttttcagtca      3480
     gtatcaaaat tattcaactg aaattcattt caaatacctg aagagagtgc tgcggtatct      3540
     aaaagggacg attgatctcg ggttagttta ctcaatgcca ccacctaata ctgactctct      3600
     tacgggatat gctgatgctg actggggcag tgatcacctg gacagaaaat ccatctctgg      3660
     taatgtcttc aaggtctttg ggtgtactgt ttcttggagt acaaaaaaac agcctacagt      3720
     gtctttgtcg tcgactgaag cggaatttat cgccctaagt tttgctgcga gggaaacact      3780
     ttggctaatg aaattgctga aggacatgaa catcaaccca gaaaacgtaa agatttttga      3840
     agataatcag tcatgcatac agatatccaa gaatccaacc gaacatcaac gtttaaaaca      3900
     tctggatatc aaacatagct ttattcgaga gtgcgttcat tcaaatttct tcactgtttg      3960
     ctatatttcg agcaaggaac aaatagctga cattttaacg aaagctttac ccccaaatca      4020
     gtttaaaatc ttgagaaaga aactaggggt atttaattgt atgattgagg ggggg           4075
//
ID   Copia-4_TrVa-LTR repbase;    DNA;    INV; 101 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-4_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-101
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 225-225 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 101 BP; 31 A; 18 C; 10 G; 42 T; 0 other;
     tgttaagaac tcaatcatca tattaggttg ctatggtacc tattcttgtc ttttacatta        60
     tttttctaac ctatgtttat gccaataaaa taatctcaac a                           101
//
ID   Copia-50_AA-LTR repbase;    DNA;    INV; 105 BP.
XX
AC   AAGE02025154;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-50_AA_;
KW   Copia-50_AA-I; Copia-50_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-105
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025154; Positions   14098   13994.
XX
SQ   Sequence 105 BP; 36 A; 29 C; 18 G; 22 T; 0 other;
     tgcaatcgta taccccttga ccaacactac acacaacaga gatataccat gaactgtatc        60
     cgcaaagagg cggccctgca ttaaaacgtc aaaaggttgc tttca                       105
//
ID   Copia-51_AA-I repbase;    DNA;    INV; 4587 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 24.01, Created)
DT   28-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-51_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4587
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4587
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4587 BP; 1209 A; 931 C; 1366 G; 1081 T; 0 other;
     ggttatggtc ccagcggcgg aaacggccat agcagcggaa aagtccgaaa agttttgatt        60
     tgattccggt ccggttcgta agtagttttt cggttcgttt gcgtgaatcg gcgaaggagc       120
     tggtgaaaga gactgacata ttttttcggc ggcggcgttc ggcgttgttg gctgggtgtt       180
     tcgttcgcgc ttgcatgttg tgacgtgtag caacacgttt tccgagaaga aaagtttgtg       240
     agaatggagg aggaagtgaa atcgcttcgc ataaagccgt ttgatggaaa tggcttcaac       300
     aattggagct tccgggtacg ggcgtacctg cagcaattgg aagtgctgca ctgcgtcgaa       360
     acggaggcgg aggaagaagc tttctggaac attctggact cggagacgga ggaggtaaaa       420
     gctgccaaga agatcaagcg tgatgcccgt gtgaagcagg acaacaaatg tcggtccgaa       480
     aagctaaaca ttacatatta agaggtgcac tttgcgaaag aggaccacgt gattattgag       540
     ctgaaatcga attcaggtta acttctgcgt tcatgagtcc tctcatggcg tagtggttaa       600
     cgcgccccaa ctagagatcg gggagtcgtg agttcgattc tcactgagaa gacgtgtaac       660
     tttttcgcaa atcttcacat caatttgtcc atctaatcca attgcaaatt atatgtaatg       720
     tttagctttt cggtagttgt taaacttcca ctcggctggt tggccgtaaa ccacgattca       780
     taattaaaac aagtaaatgt cggtcggtgt tgatccagac gattgccgac agccacttgg       840
     agtatgtgaa ggataaaaat tctccgaaga agatttggga cgctcttcac aacattttcg       900
     aaaggaaaag cattaccagt cgattccttt tgaaaaagca gctgctgatg atgaaataca       960
     acgaaagcga accactgcaa gaccactttt tgcgattcga ccgtttggtc cgggaagtta      1020
     agggagctgg tgctcgaatg gaagaggaag acgtgatctg ccacttgatg atcacgatgc      1080
     cggagtccta cgatgcggtc actactgcca tggaggcggt gtccgaccgg ttgacgatgg      1140
     atctcgtccg gcggaattac ctcgacgtcg aagcgaagcg gcgcggttag cgagtggaaa      1200
     ccgattccaa cgaggccgcg ttttcgggca agtccagcaa gcaaggtaag ctcaaatgct      1260
     ttaattgtgg tggtgtcggg cacaagaagt tccaatgccc caagcgaggc gaaacggaga      1320
     cacggggaca aactgctcca tcgaagaaaa tcacgcagaa ggcaaatgtg agtgcgaaga      1380
     ctgtttcgtt cgttgctgct gattctactg agctggtggc ggttggttcc aggatcgaat      1440
     cgaaatggta tttggatagt ggtgcttcag agcacatgtc aaacgacagg gctcttttcg      1500
     aaaatcttca gaaactagat aggccagtag tgattcagac cgctaaaagc ggaagcaatt      1560
     tgctagctag gtacaagcgt cgagttgttg tgcaggcact agttagtgag gaaaggatcc      1620
     aggtaaacat ggaggacgtt ttgttcatac ctgaattgtc gctaaatctg ctgtcgctca      1680
     ggcggttgga ggctacaggg aagaagattg ttttcttcga cggttgcgta accgtagaag      1740
     cggatgggga gattgtagcg acaggtagac aatccggaag gctctatgcg atggattttc      1800
     agtgcgagcg gcgacatact gaagggaaag cgttagtgac tggcaaggtc aaccgtgagt      1860
     tggagttgtg gcaccacagg tacggccatt tgggaaacga caatcttctg aagctcgtta      1920
     ccaagaacat ggttgatggt tttaccgtgg atcgagtgaa ggctggaggt gcacagtttc      1980
     tttgcgagcc gtgcattcat ggaaagcaga caagggaacc tttccggcga catccagaga      2040
     aacgtgcagg gagaccgttg gagatagtcc atagcgacgt gtgcggacct gtcacacccg      2100
     tggcgtggga tggtagttcg tatttcgtga cctttacgga cgatttcacg cacgtggcag      2160
     tggtgtacat gatcaaaacg aaggacgagg tactggagcg gttcatggac tacgaggcga      2220
     tgtcgactgc tcacttcggc gttcggatct cgcggctgcg ctgtgacaac gggggtgagt      2280
     atactggcaa ggcgatgaag aagttctgca gaaaacgcgg cattcagctg gagatgaccg      2340
     ttccgtatac gccggagcag aacggcgtca gtgaacgtct taatcgaacg atagtggaaa      2400
     aatctcgatc gatgcttgaa gctagtggtg tgtcgaagga actgtggagc gaggcagtct      2460
     acacgagcgc gtacgtgtta aatcgtagtc cgagtgtcgc ggttggtggt gatatcactc      2520
     cgtatgaggc atggtacggg aaaaagccga atgtgtcgaa cttgcgggtg ttcggtagtg      2580
     attgttacat tcatgtaccc aagcagttgc gaaagaaact agactcgaaa acgcaaaaag      2640
     ttacgttcgt cggttacgct ccaaacgggt atcgcgtgtg gaacggcaag aaagtgatcg      2700
     tcgcgcggga cgttatcttt aacgaagatg aactagtgtt tcggtcgccg gttgagagta      2760
     agatgaatga agacgatacg gtcgtagtga aggaatatgt accgaaaccg aacccgaatg      2820
     tgcagcctat tgaatcggta gtgccggaag atgaagactc ggaagaagat ttcttttcgg      2880
     aggatgaacc ggctgaacag cccgaagctg gcaatgacac gggagctggt gttcgacgaa      2940
     gtggcagaaa tgtagtacct ccgaagtggc acagtgattt tgatatggac ctatcggctt      3000
     ttgcattgtg tgcggaaaat tttgtcgacg ggattccctc ggacgtcagc gagttgaaga      3060
     agcggcagga ttggccaatg tggaagcagg cgatacaaga agagcttgaa tcactggatc      3120
     ggaacgatac ttggagtttg gtggagctac cggccgggag gaaggtcgtg gacagcaagt      3180
     ggatcttcaa gattaagcgg tgcagtgacg gtacgatcga taagtacaaa gccaggctgg      3240
     tggcgcgtgg ttttacgcaa cgtcagggtt ttgacttcat cgagacctat tcaccagtag      3300
     ccaagatgtc cacggtgagg atcctactgg cgcttgcaaa tcatgagggg tggtacgtcc      3360
     accaaatgga cgtcaagagt gcattcttga acggcatgtt agaggaggaa atctacatgc      3420
     gcccaccgcc tggctttgag gcgggaggta atcgtgtctg tcgtctgaat aaggccatct      3480
     atggcctgaa gcagtcctca cggaactgga acctgcgatt ccatgagttc atcgacaagc      3540
     tcgggttcaa gcgaagtgaa cacgactact gtttctactt ctggaagagc aacggcatcg      3600
     tcatctacgt actgatttat gtagacgatg tacttattgc gagcaactca ctgaaagcgg      3660
     tccaaacctt gaagaagaaa ttttcggctg agtttgaaat gaaggaccta caagaagtgc      3720
     ggaactttct ggggttgaat atccagcgtg accgtgaggc gggattgatg aaaatcgatc      3780
     aaaaggcgta catcgaagcg gtactcgagc gctttggcat gggtaactgc aagccatcac      3840
     cagtgccaat ggaccctcac ttgcggctgg agaaagggaa cgatccgaaa agcttcacgg      3900
     acaagccgta tcgtgaattg atcggatgtc taatgtacct cacagtgact tccagaccag      3960
     acatctgcgc ggcggttaat tacttcgccg gctttcaatg ttgtgcaacg gaagagcact      4020
     gggcgcacct gaagaaggtc ctgcgatatc ttcggggtac tgcggattac cagttggtat      4080
     atagacgtgt ggaagcggaa cctgttgcgg tgtttgcaga cgcggattgg gggaacgatc      4140
     ccaacgacag aagatctgta tccggattgg tgattaagct gcatggtcaa actgtggttt      4200
     ggtctaccaa gaaacagtca tccgtagcgc tgtcgtccac tgaggcggag ctaatggctc      4260
     tctgccaagc aagttgtgaa tcgatgtggg ttgtcaacct actcaagtct gttcagcaag      4320
     aagtgaaaaa gccagttaca gtttttgagg ataaccaacc atgcatctca attacttcgg      4380
     atccacggaa gctgaaacgg atgaaacaca tagaggttca gtattgtttt gtgcgagagc      4440
     tgatcgaaag gggcaagctt atgctgaagt atctaccgac ggatgagcag cctgctgata      4500
     tgttaacgaa ggggttaccg gcaccacggt tccggaagtt cagggatatg ataggagttg      4560
     agttaggagt agctgattga ggcggga                                          4587
//
ID   Copia-51_AA-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   28-DEC-2018 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-51_AA_;
KW   Copia-51_AA-I; Copia-51_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
SQ   Sequence 188 BP; 57 A; 36 C; 27 G; 67 T; 1 other;
     tgttgagggt aataattaac acacattcac ctactctttg ttatacagtg taagctatac        60
     ctgaaatgat aaatactttg taccttgaac tgcgtcatga gaaatgtcat taaacatatt       120
     cattmtaagt ttgtattcct atcgacaaca cgcgttttta ttctctctcc gaaattgctc       180
     tgctaaga                                                                188
//
ID   Copia-52_AA-I repbase;    DNA;    INV; 4092 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.01, Created)
DT   14-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-52_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4092
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4092
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 89-89 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4062
FT                 /product="Copia-52_AA-I_1p"
FT                 /translation="MADNLKAVFPKLSGANYASWQYRMQTMLERDEIWYVI
FT                 DAAKPEEADATMPQWKKDDAKARAIIAFFVEDNQLRFIKKSTNAREMWNNL
FT                 KTYHNKATIGNQASLLRQLCALSLEEGGDVERHIEQTEDLFEKLDNAGVEL
FT                 QELLRIIMLLRSLPKSFDSFVTSLENRPQADLTMDFVVSRLRDETQKRASQ
FT                 SCGLVAEKALKADVQKTEKKKCYFCNQPGHYRRQCRKFLATKKSEKPSESK
FT                 QVTSDQHAKQAQAETPPAQVRDDTVVYGAVCFVAGGAIAGAWTVDSGCTCH
FT                 MTNDRSFFNEFKKDVIVDVTLADGTKTRSAGCGTGVLFGMNGDGKRIAITL
FT                 DNVLFVPNLEGGLISVRKLALKKFVVTFTENSCEIRTAEGVVVAVGEMVGS
FT                 QYKLKVAEQCLAVKGNHSEKCQHTWHRRMGHRDMDVVSVINKNDMVSGFEL
FT                 QDCGERIICECCLKGKLARRPFPQITERKSLQPLDLIHTDLCGPMDNPTPS
FT                 GNKYIMTMIDDCTRYCVVYLLRSKSEAANKIKEYVRWVENLFNRKPRAIRS
FT                 DGGGEYVGTDLLNFYKAEGIHYQFTTPYTPQQNGVAERKNRALQEMANCLL
FT                 LDAGLPKRYWGEAVMTAVHLQNRLPTRAVQRTPYELWTGQKPDFKQLRVFG
FT                 CEAYVHIPDVKRKKFEPKAEKLIFVGYSEHHKGFRFLNRXTDRIIISRDAR
FT                 FVELNNGSEQHADTEKLSEPVLVEVDVSQNSGCEVEMIDNPGERVAEVPEQ
FT                 PEEEVYEDAESDFLGFELDDDVYFGEEQEEQVRRSNRATRGVLPRRYDGFV
FT                 VGLATHVEEPADYHEALAIPEWKQAMKEEMQAHEENNTWTLVRLPAGKKLI
FT                 GAKWVFKLKKNESGEVIKYKARVVAQGYTQKRGIDFKEVFAPVTRLTTLRA
FT                 LLAVAGKRGMVLKQYDAKTAYLNGKVDEELYMRQPPGFEXPGQEEFVCKLQ
FT                 KSIYGLRQSARCWNQALHAGLLDIGFKQRGSDPCLYARENNGVTVYLLVYV
FT                 DDFLMACTDEAVIDRVYAELREKFDITSLGNVRYFLGHEITKEGGCYMMQL
FT                 TTYIDSLVEKFGMEASKPARTPMDLGYVAQNDDSKSFQDTSLYRSLVGALL
FT                 YLAVNGRPDIAASVGLLGRKVSAPNKMDWTAARRVVQYLKATKDFKLKFGP
FT                 GNGWILTGYADSDWAGDKQSRRSTTGYVFFYGGGPICWVSKRQDSVALSTL
FT                 EAEYNALSLACQEAVWLRRLLKDLDELQPEATTIYEDNQGCLSFVKAERVS
FT                 GRVKHIETKGHYIRELCERKVVTLQYCPSTEMIADALTKPLGPTMMTRFVD
FT                 QVGLSN"
XX
SQ   Sequence 4092 BP; 1188 A; 831 C; 1138 G; 933 T; 2 other;
     ggttctggcc ccagtgtcgg atatcgggaa aagtgcggtg tttcgtcgaa aaatccggaa        60
     gaaagtgcgt ttttccgaga actgttcgtg cgcgattgga acgagaagat ggcggacaat       120
     ctaaaagcag tgtttcccaa gctcagtggt gcaaattacg cttcatggca gtatcgcatg       180
     caaacgatgc ttgagcgtga tgaaatttgg tatgtcattg atgctgctaa acccgaggag       240
     gcggatgcca ctatgccgca gtggaaaaag gatgatgcaa aggcccgtgc tattatcgca       300
     ttctttgtgg aggataatca gctgcgtttc atcaagaaat cgacgaatgc gcgtgaaatg       360
     tggaacaacc ttaaaacgta ccacaacaaa gcgacgattg ggaatcaagc atctcttttg       420
     cgacagctct gtgctcttag tttggaagaa ggtggtgatg tcgagcggca tatcgagcaa       480
     acggaggact tgttcgaaaa attggataac gctggtgtcg agttgcagga actgctcagg       540
     ataattatgc tgctacgaag tttgccgaag tcattcgaca gctttgtcac ttcgttggaa       600
     aatcgtcccc aagctgattt gacaatggac ttcgtagttt ctcgattgcg ggatgaaacc       660
     cagaagcgag cgagtcagtc gtgcggtctc gtagcggaga aggctttgaa ggcagatgtg       720
     cagaaaacgg agaagaaaaa gtgttacttt tgtaatcagc caggacatta ccgtcgccag       780
     tgtcgaaagt ttttagcgac gaagaagagt gaaaagccaa gtgaatcaaa gcaggtgacg       840
     tctgatcaac atgcgaagca agctcaagct gaaaccccac cggctcaagt gagagatgat       900
     accgtcgtgt acggggccgt ttgctttgtc gcaggaggag cgattgctgg tgcatggacg       960
     gtggacagtg gctgtacctg ccacatgact aatgatcgca gcttcttcaa tgaattcaag      1020
     aaggacgtaa tagtcgacgt gaccctagca gacggcacta aaactcggtc ggctggatgc      1080
     ggaactggag tactcttcgg gatgaacgga gatggaaaac gtatcgcgat caccctggat      1140
     aacgtactat tcgttcccaa cctggagggc ggattgatct cggtcagaaa gctagctctg      1200
     aagaagttcg tggtcacctt tacggaaaat tcttgtgaaa ttagaacggc tgaaggcgtc      1260
     gttgtagcag ttggcgaaat ggttggaagc caatataagc tgaaggtagc agaacagtgc      1320
     ctggccgtga agggtaatca cagtgaaaag tgtcagcaca cctggcaccg cagaatgggc      1380
     cacagagata tggacgtcgt gagtgtaatc aacaagaacg atatggtaag cggatttgag      1440
     ctgcaagact gcggtgagcg aatcatttgt gagtgttgtt tgaagggtaa attagctcgc      1500
     cggccatttc cacagatcac agagcgaaaa tcactgcagc ctttggattt aatccatacg      1560
     gatctgtgtg gtcctatgga caacccgact cccagcggaa ataaatatat aatgaccatg      1620
     attgatgatt gtacacgcta ttgcgtggta tacctcctca ggtcgaaaag cgaagcagct      1680
     aataaaataa aggagtacgt tcgatgggtc gaaaatctgt tcaaccgtaa accccgagcc      1740
     atcaggtcag acggcggggg tgagtatgtc ggaaccgatc tcctgaactt ctacaaggcc      1800
     gaaggtatac actatcagtt caccactcca tacacgccac aacagaatgg agtggctgaa      1860
     cgaaaaaata gggccttgca agaaatggcg aactgtttgc tgcttgatgc tggacttccc      1920
     aaacggtatt ggggagaagc agtaatgacg gcggttcatc tccagaaccg tttaccgacg      1980
     agagctgtgc aacgaacacc gtacgagtta tggacggggc agaaaccgga tttcaagcag      2040
     ctccgtgtat tcggatgtga ggcttatgtc cacattccgg atgtaaaacg caagaaattc      2100
     gaaccgaagg ccgaaaaact catcttcgtc ggatattctg agcaccacaa aggatttcgt      2160
     ttcctcaatc gcaamacaga caggatcatt atcagccgcg acgcacgatt cgttgaattg      2220
     aacaacggtt cagaacagca cgccgatacc gaaaagctga gcgagccagt actggtggaa      2280
     gtggatgtgt cgcagaatag cggatgtgaa gtggaaatga ttgacaatcc gggcgaaaga      2340
     gtggcagaag tgcctgaaca acccgaagaa gaagtttatg aagacgctga aagtgatttc      2400
     cttggatttg agctggacga tgatgtttat ttcggagaag agcaagaaga gcaagtgaga      2460
     agatcgaatc gcgccacgcg cggtgttctg ccgagaagat acgatggttt tgtagtcgga      2520
     ctggcaaccc atgtggaaga gccagctgat tatcatgaag cgttggcgat acccgagtgg      2580
     aagcaggcaa tgaaagaaga aatgcaagct catgaagaaa acaatacgtg gaccctagtg      2640
     cggcttccag ccggtaagaa actgatcggt gcaaaatggg ttttcaaact caagaagaac      2700
     gaaagtggtg aagtgattaa atataaagca agggttgtag ctcaaggcta tacccaaaag      2760
     cgcggtattg actttaaaga agttttcgcg cctgtgacac gtttgacaac gttgcgtgct      2820
     ttgctagcag tagctggaaa acgtggtatg gtgttgaagc aatatgatgc taaaacggca      2880
     tacttgaatg gcaaagttga cgaagaacta tatatgcgac agccccctgg ttttgaagma      2940
     cccggacagg aggagtttgt gtgtaagttg cagaaaagca tttacggact ccggcaatcc      3000
     gcaaggtgct ggaatcaggc acttcacgca ggattactgg acatcggttt caaacagcga      3060
     ggatcggatc cgtgcctcta tgcgcgcgag aacaacggcg ttacagtata cttacttgtg      3120
     tacgtcgatg attttttgat ggcgtgcact gacgaggccg taatcgatcg agtttatgcg      3180
     gaactgaggg agaagtttga catcacatct cttggaaatg tgcgttattt cctcgggcac      3240
     gaaattacca aagaaggtgg gtgttacatg atgcaactaa caacttacat cgacagtttg      3300
     gttgaaaaat ttggcatgga agcgtccaag ccagctagaa caccgatgga cttaggctac      3360
     gttgcgcaaa acgatgacag caagagcttc caggatacat cactgtaccg gagtctggtg      3420
     ggagcattgc tatacttagc agtgaacggg agaccagaca ttgcagcaag tgttggtctt      3480
     cttggtagaa aggtaagcgc accaaataaa atggactgga cggcagctag aagagtcgtt      3540
     caatatctga aggcgacgaa agacttcaag cttaagtttg gtcctggtaa tggatggatt      3600
     ctaactggct atgcagactc ggactgggca ggagacaagc aatcgagacg ttcaactacc      3660
     ggatatgtgt ttttctacgg tggaggaccg atatgctggg tcagtaaacg gcaagacagc      3720
     gtagctttat cgacgttgga ggcagagtac aatgctttgt ctctagcatg tcaagaagca      3780
     gtctggctca ggcgcttact caaggatttg gacgagcttc aaccggaagc aacaaccatc      3840
     tatgaggaca accaaggttg cctcagcttc gttaaagcag aacgggtcag cggtcgagtt      3900
     aaacatattg aaacgaaggg ccattacatc cgcgaactgt gtgaacgtaa ggttgtgaca      3960
     ctgcaatatt gcccctcaac cgaaatgatt gcggatgccc ttacaaaacc tttgggacca      4020
     accatgatga cgagatttgt ggatcaagtt ggactatcga attgaggaca tttggtggta      4080
     attcaggagg ag                                                          4092
//
ID   Copia-52_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   supercont1.135;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-52_AA_;
KW   Copia-52_AA-I; Copia-52_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.135; Positions  887173  887392.
XX
SQ   Sequence 220 BP; 54 A; 51 C; 41 G; 74 T; 0 other;
     tgttggagga gaataaccac cgtgcaaccc ctcgttgcta ccaatgttgc taccagcagc        60
     acgatgatga gagagagcaa atacattttt cattcgttcg ttttcctttg tacgagtaac       120
     acgttaataa atcattgttc gtagtttaat cgcgtttata accctttttc tccgattatt       180
     ccgagttatc ccactgtatt ctgctagtgg acttccgtca                             220
//
ID   Copia-53_AA-I repbase;    DNA;    INV; 4221 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.01, Created)
DT   12-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-53_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4221
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4221
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(1), 106-106 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..4218
FT                 /product="Copia-53_AA-I_1p"
FT                 /translation="MSRVNSEVSGVGDGVQATHGRREFPQVTHHSHSLSSL
FT                 PSIERLIGRDNWTTWKFAVETFLELEDLWEVVKPIPTAEGEIIIDATKDRK
FT                 ARAKIILLLDPVNYVHVKDAKTAREVWAKLEAAFEDNGLTRRVGLLRKLIT
FT                 SSLSSCDSMDSYVNEIISTAHQLRGVGFEISEEWIGTLLLAGLPEEYKPML
FT                 MALENSGIPITGDSIKTKLLQEVHSSSDKNAFVGKHVYPYKQKQGANHPRS
FT                 AEQPPKGPKCKHCHKFGHIARDCRKKKGSAFSAVLSTNNEEESDAWYFDSG
FT                 ASDHFTKDKYLLTEQRPATGTVLAADKAPMKIESSGIVKLAAKCCPKDPPI
FT                 EVNNVKYIPEMSNNLLSVSQIVRRGHEVHFSRDGVKVINPSGAVIATGIHD
FT                 VRKGLFKFDEDKSAGMSLTCVSSSMQLWHRRMGHLNISSLKQLKSGLASGV
FT                 MFEETEIENCVVCAMGKQTRLPFPKKGHRADEVLEIVHSDICGPMEEKSLG
FT                 GSRYYLSFTDDKTRRIFMYFLERKSEDEVMRAFNQFRSFAENQTGRRLKTL
FT                 RTDNGKEFTNKAFQNLLKKHGIRHQTSADYNPEQNGMAERVNRTIVERARC
FT                 MLFEAKLPKAFWAEAVAAATYLVNRSPTKGHKQTPEEAWSGRKPDLSRVRV
FT                 FGSKVMVHVPKQKRKKWDAKSKEAIFVGYEEETKAYRLYDSVKKTIFKSRD
FT                 VLFINESMERDQEKGNNLSKRSRNHNFVSLDFLEDIPVTNSNNEQPLNTGE
FT                 ERLQVSHNGVIPDEPDDDDELQESEVSQYFSQTESSNEDSSDDSNDVTIMA
FT                 LPPRTTSNPPLSPVLRRSGRERAFPGKYNDYYLPNKGLPSYPITDVSREST
FT                 SREHQQQQTNEEPPPIHGLKAVRNIKDPRTPTEALNSDDAELWRAAMDEEF
FT                 QALLKNNTWDLVDLPTGAKTIGCKWLFKTKVDEKGNVVRYKARIVAQGFTQ
FT                 KYGVDYDEVFAPVAKQVTFRMLLSIASHRKMYVKHVDVKTAYLNGQLEETI
FT                 YMRQPEEYSTGSERKVCRLRRSLYGLKQSARVWNRKVDSVFKMLGFKQCRT
FT                 DQCLYKRKTTGGETEFILIYVDDMIIITATEEEFVSIYNQLEKNFAVTNLG
FT                 DVRSFLGIEVEKDNEGYKLNQQAYIRKLTERFNLQNAKPSKVPMDTSYLQE
FT                 KEEREPLSSNSQYLSLIGGLLYIAVQTRPDISVSVSLLAQKSSSPSQQDWN
FT                 EAKKVLRYLYATRDYKLKLRSSRENLCMYVDADYAGDCRDRKSNSGYLIKY
FT                 GGGVIAWGSRKQTSVALSSTEAEFISLAEGCQELIWTKRLLEEIVEEDIGP
FT                 ITVFEDNQSCIKLVEGDRIERRSKHIDVRYFFVRDLQQKEVIKMKYCPTET
FT                 MLADILTKPLQRVRLEQIRKMIGILPDPIEE"
XX
SQ   Sequence 4221 BP; 1397 A; 803 C; 1011 G; 1010 T; 0 other;
     ggttttgagc ccagattgaa acatttccac tgaaatatgt cacgagtcaa ctctgaagta        60
     agcggtgtag gagatggtgt tcaagcaact cacggaagga gagaatttcc tcaagttact       120
     catcatagtc atagtctgtc aagtctaccc tcaatagagc gattgatcgg cagagacaac       180
     tggacaacgt ggaaattcgc tgtcgagacg ttcttagaac tagaagacct ctgggaagtt       240
     gtgaaaccaa taccaaccgc tgaaggagaa attatcattg atgcaaccaa agatcgcaag       300
     gctcgcgcaa aaataattct acttttggat cctgttaatt acgttcacgt caaagatgcg       360
     aagacggccc gcgaggtatg ggcgaaactg gaggcagctt tcgaagataa tggccttacc       420
     agacgagtag gattgctgag gaaactcatt acaagcagcc tttcatcgtg tgattctatg       480
     gattcttacg tcaacgaaat catctctaca gctcatcaac tacgcggggt cggatttgaa       540
     atatctgaag aatggattgg gaccctcttg ttagctggat tacccgaaga atacaagcct       600
     atgctgatgg cactggaaaa ttccggtatc ccgatcactg gcgatagtat aaaaacaaaa       660
     ttactgcagg aagttcattc atcgtcggac aaaaacgcat ttgtaggtaa gcatgtatac       720
     ccgtataagc agaagcaagg cgcaaaccat ccaaggtcag ctgagcagcc gccgaaggga       780
     ccaaaatgca agcactgcca caagttcggt catatcgcaa gagattgtag aaagaagaag       840
     ggatctgcat tttctgcggt attgtccacc aacaacgaag aagagagcga tgcctggtat       900
     tttgactcgg gagcttcaga tcattttacc aaggataagt atttattaac ggagcaacga       960
     ccggcgactg gtacagtatt agcagcagat aaggcaccga tgaagatcga atcatccgga      1020
     atcgtcaagc tagcagcaaa atgttgtcca aaagatcctc caatcgaagt caacaacgtg      1080
     aaatacattc cagagatgtc gaataacttg ctatcagtaa gccagattgt ccgtagaggc      1140
     catgaagtac atttcagcag agatggtgtg aaggttatca atccaagtgg agcagtaatt      1200
     gcaaccggca ttcatgatgt tcgcaaaggt ctattcaagt tcgatgaaga taagagcgct      1260
     ggaatgtcct taacatgtgt atcatcaagc atgcagctgt ggcatcgaag gatgggccat      1320
     ctcaacattt ccagtttgaa gcagcttaaa tctggtttag cgtctggtgt tatgttcgaa      1380
     gaaactgaaa ttgaaaattg cgtcgtatgt gccatgggaa aacaaactcg cttgccgttt      1440
     ccgaagaaag gacacagggc ggatgaagtt ctggagattg ttcattctga tatctgtgga      1500
     cccatggagg aaaaatcact cggtggaagt cgttattatc tatccttcac tgatgataag      1560
     acaagacgaa ttttcatgta ttttttggaa cgaaaaagtg aagacgaagt catgcgagca      1620
     ttcaaccaat tcaggagttt tgctgaaaat caaactggac gaaggctgaa aacgttaaga      1680
     actgataatg gaaaggaatt cacaaacaaa gctttccaga accttttgaa gaagcatggt      1740
     atacgacatc agacatctgc tgactacaat ccagaacaga atggtatggc tgagcgcgtt      1800
     aatcgtacaa ttgtggagcg agcgcgctgc atgttatttg aagcgaagtt accgaaagct      1860
     ttttgggcag aagcagtagc agcggctaca tatttggtaa atcgttctcc aacgaagggg      1920
     cacaagcaaa caccagaaga agcgtggtct ggacgaaaac cagatttgtc ccgagtacgt      1980
     gtgtttggat caaaagtcat ggttcacgtt cctaagcaaa agagaaagaa atgggatgcc      2040
     aaatcaaaag aagctatatt cgtgggatat gaagaagaaa caaaagccta tcgtctatac      2100
     gattccgtta agaagaccat attcaagagt cgagatgttc tttttatcaa tgagtcaatg      2160
     gaacgagatc aagaaaaagg caataatcta tcaaaacgat caagaaatca caattttgtt      2220
     agcctagatt ttttagaaga tattcctgtt actaattcga ataatgaaca gccactcaat      2280
     actggagaag agagattgca agtttcccat aatggcgtga ttccagacga acccgatgat      2340
     gacgacgaac tgcaagaatc tgaggtttcg cagtattttt cgcaaacaga aagcagtaat      2400
     gaagatagtt cagacgattc caatgacgtg acaataatgg cgctccctcc acgaacaact      2460
     tcaaacccac cgttgtcacc ggtgttgagg cgcagtggac gggagcgcgc attccctggc      2520
     aagtataacg attattatct tccaaacaaa ggtttgccgt cgtacccaat tacagatgta      2580
     tcccgagaat caaccagtcg tgagcatcaa caacagcaga cgaatgagga accaccacca      2640
     atccatggtt tgaaggcagt acggaacatc aaagatcccc gaactccaac agaagcattg      2700
     aacagtgatg atgcggagct gtggagagct gccatggatg aggagtttca agcgctacta      2760
     aagaataata cgtgggattt agttgattta ccaaccggtg cgaaaacgat tggatgcaag      2820
     tggttattca agaccaaggt cgatgaaaaa gggaacgtcg tccgatacaa agcaaggatt      2880
     gtcgcacaag gttttactca aaagtacgga gtggattatg atgaagtatt cgctcctgtg      2940
     gccaaacaag ttacgttccg catgttgctg agtattgcta gccatagaaa gatgtatgtg      3000
     aagcacgtag atgttaaaac agcttatctt aatggacaac tggaggaaac tatatatatg      3060
     cggcaacctg aagaatacag cactggatcc gagcgcaaag tttgtcgatt aaggaggagt      3120
     ttatatggat tgaaacaatc ggcgagggtc tggaacagaa aagtcgattc agtattcaag      3180
     atgttaggtt tcaaacagtg tcgaactgat caatgtttgt acaagcgcaa gactacagga      3240
     ggagagacag aatttattct gatttacgtt gatgacatga ttattattac agcaactgaa      3300
     gaggaatttg tgtcgatcta caaccagctt gagaagaact ttgccgttac aaatctagga      3360
     gacgtacgaa gttttctggg aattgaggta gagaaagaca atgaaggata caaactcaat      3420
     cagcaagcat acattcgcaa gttaaccgaa agattcaatt tgcaaaatgc gaagccgtcc      3480
     aaagttccaa tggacacaag ctatttacag gagaaggagg agagagaacc gttatctagc      3540
     aattcgcaat atcttagcct tatcggaggt ctcctgtata tagcagtgca aaccagaccg      3600
     gatatatccg taagcgtttc gttactggct cagaaatcaa gttcaccgag tcaacaggat      3660
     tggaatgaag cgaagaaggt actgagatat ttgtatgcaa caagagatta taagctgaag      3720
     ctgagatcat cacgagagaa cctatgcatg tacgttgatg ctgactacgc aggagattgc      3780
     agagacagaa agtcgaattc cgggtaccta atcaaatatg gaggaggagt tattgcttgg      3840
     ggttcgagaa aacagacaag cgtagctttg agttcaacag aagctgaatt tatttccctt      3900
     gctgaaggat gccaagaatt aatttggact aagcgactgt tggaagaaat tgttgaagaa      3960
     gatattggac caatcaccgt atttgaagat aatcaaagtt gtataaaact cgtcgaaggt      4020
     gaccgaatcg aacgcaggag caaacacatt gatgtacgat atttctttgt gagagatctg      4080
     cagcaaaaag aagtcatcaa gatgaaatat tgtccaaccg aaacaatgct ggcagatatt      4140
     cttacgaagc ctctgcaacg tgtacgtttg gagcaaatac gaaagatgat cggaatacta      4200
     ccagatccaa tcgaggagga g                                                4221
//
ID   Copia-53_AA-LTR repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   12-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-53_AA_;
KW   Copia-53_AA-I; Copia-53_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-131
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-131
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: replaced by consensus, and update the 3'-end to be
CC   non-canonical end, and the.
XX
SQ   Sequence 131 BP; 49 A; 23 C; 19 G; 40 T; 0 other;
     tgttagcagt aggcgtttgg acctgagttt aatcatagta accctagata ataaatgaaa        60
     aaataaatct tgtcattcaa tgttcaactc tcaaaccaaa cagtagttct ttctacgaca       120
     atatactaag a                                                            131
//
ID   Copia-54_AA-I repbase;    DNA;    INV; 3972 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 24.01, Created)
DT   19-DEC-2018 (Rel. 24.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-54_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3972
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3972
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (19-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3972 BP; 1045 A; 787 C; 1187 G; 953 T; 0 other;
     ggttatggcc ccagtgcacc ggagtcgcga gtgattattc gggaattgtt ttttcggtca        60
     gtttttttgt gcggttgatt ttttcggcag tccgacatga gtgacaaaat ggcgacgttc       120
     accaaattga atgcttccaa ctatgaaaat tggagcttca aagtgaaact gctcctgatt       180
     aaggaaggct gttgggaggc tatcagtgag gcgaagccgg agcccgtcac gccggcgtgg       240
     gaaacgaaaa atcagcaggc aatggcaact gtcggattat cggtcgagga cagccagctg       300
     attcatatcc ggaaagccac atctgctaag gaagcgtggg agaatctaga aaaagtgtat       360
     gtgaaaagaa cgctcagtac gaaggtctcc ctgatgcgaa aaatttgtcg cattcgtttg       420
     gagcacaacg gcgacatgga ggcgcacatc gcgacgctga cagatctggt ggaaaagttg       480
     aacgggttac agcaaaacgc cgttttggac gatcagtggc tggtggcgat tttgtttagt       540
     agtctcccgg aagagtacga gactctagtg actgccttgg aagcgaggcc tgatgcggat       600
     ttgaccttgg atctcgtcaa aggtaaattg atcgatgagt ggcagaaaaa ggcaaatcgc       660
     gcggacagtg gtaaaagtgg tgaaacagct ttgcatgctg cggccggcag agaagaggtt       720
     aagtgctatt tttgtaaaaa gccgggccat aagaaagcga gctgtgacaa gtggaagaag       780
     tggaaggaaa ataagaagaa aagtgaatcg aaagaagaaa aatctggcaa taaggcgcac       840
     agtgtagtgc atgatgacgt caaagtgatc gactgggcgt tcgcagccgg tgatctagtg       900
     ccgagtattt ggattcttga ctcgggtgca acatgccata ttgcgaacag ccgtgatttc       960
     ttcgagtcgt ttgacagcag tgtcagagaa gatgtgagcg tcgcgaacgg cgtgaaagtg      1020
     ggatccgtcg gaagagggtc cggaaaattg gttgctgttg acagtgcgaa tcagcgtcgt      1080
     gtgatcacag tggatgatgt cttgctagtg ccaggaatga aagcgaactt gttgtcggtt      1140
     aagcgattag tgagcaaggg ctacgaagtg aactttgatg cgaaaggtgc aaccattagt      1200
     cggaatggga ctgttggtgc tgtggccgaa ctttcgaaca atttattcgt gatgaagctg      1260
     ctcaatgaaa gtgtatcgct ggtgagtgaa tcaaccgagt gcgtccatga atggcactgc      1320
     aagatgggac acagagacat tgaagctgtg agaaagcttc cgttagtggc atccgggatg      1380
     aagatcaaag agtgtagctg ttctgaagat tgcgaagtgt gtatacgtgg gaagatgcat      1440
     cgtgagccgt ttccgaaagc gtcgaagagc aagtcgtcgg gcgttttgga cctgatccat      1500
     acggatatct gcggtcctat gcggactgcg acgctgagcg gaaggcgcta cttcctgacg      1560
     tttatagacg acttcagcaa gtatacggtt gtctatatcc tcaagcgcaa atcggagacg      1620
     ctcgacaagc tgcgagagta catcgagatg gttaccacca agttcggtaa gaggccaaag      1680
     atacttcgct cggataacgg aggtgagtac accggggatg attttaaacg atttttgaag      1740
     aagaatggca ttatcggtca gtttaccgca ccgtattcgc cgcaacaaaa tggcactgcg      1800
     gagcgtaaga accggtatct tgtggaaatg gcccgatgtt tgttgatcca ggcagggctc      1860
     gacgaccggt tctggggtga agccatagta aatgcgaact atcttcaaaa tcgcctccct      1920
     tctcgtacaa taccggtgac accgtttgaa cgttggcatg gggtaaaacc gaatctgtgt      1980
     catgttcgcc catttggtgt tgatgtttac tgctacatac cgagcgaaaa gcggggcaaa      2040
     cttgatgaaa aggcgaagaa gctgaagctt atgggataca gcgaggtgtc aaaagcgtac      2100
     cgtctgattg atgtttcgac ggtgagaatt acgattagtc gggacgttcg ttttctgagg      2160
     agcttcagtt cggtacccga agtggaaagc atgtctccgt gtagcgatgt attgatacct      2220
     ctgttgaaga acgctgcgag catggatccg gtcgtgcctt gcgaagtgcc tgtggtggag      2280
     cacgaggacg aagacgtctg ggaggatgcg acgcctgctg ctcatgaaga gattgtgagg      2340
     agatcaacta ggacaacgag aggacagtta ccggcccgat atgcttgtgc ggcagaagct      2400
     gtagttcagg aggagccgaa aacagcgaag gaggcgctgt ctggtccaga tagtcataac      2460
     tggaagaagg cgatgttgga tgaactcgaa tcgataagga gcaacgatgc ttgggaactt      2520
     gtcgatgctc cacaaggaaa acgtgtgttg ggctgtaaat gggttttcca actcaagcgt      2580
     acctcagatg gtaagattat tcggttcaag gccagacttg tggcgcaagg ctacaatcag      2640
     cagtacggta gtgagtatga cgaagtcttc gcgcctgtcg ttcgtcagac tactttcaga      2700
     gcgctcatgt ctgttgcggc gaagcggagg atgacagtac ggcagtatga cattaagaca      2760
     gcgtttctaa acggtgacct tgaggaggag ttgttcatgc gccagcctcc gggattcgtc      2820
     gtcaagggcg ctgaaggcaa ggtctgtcgt ttaaaacgta gcttatacgg gttaaagcag      2880
     agtgctcgct cgtggaactt gaagcttcat caggtgctag aaggtgacgg tttcaagagg      2940
     agtactgccg atccgtgtct ttatagcaag gtggtcaacg gaaagcgctg ctatgtttta      3000
     gtgtacgtcg atgatcttat tatcgccagt gaggaagaag gaatcatcga gtcgattagt      3060
     cggacgctag ctcgtaactt tgaaatcgtt agtctcggag aagtgcggaa ttacgtcggc      3120
     attgaagtgg aacgtgacag tgctggtgac ttccacattg cgcagcgcag atacattgcg      3180
     gatattgtaa agtcggccgg attgcaggat gccaaatcat cgccgatccc tattgacgtt      3240
     ggttatttca agccggatgc agaagacaag cctctctcgg ataacgcgga gtatcaaaag      3300
     ctagtgggaa agctgttatt cgtagctgta aacagtcggc cggatatcgc agctccagtc      3360
     tcgatactta gccgaaaact ttcgaaccct acacagcgtg attggaatga actgcgaagg      3420
     attgtgcgtt atttgaaagg ttcagtcaac ctgaagcttc ggctgagcag tgatggagat      3480
     aaatctggat tggtgggtca tgcagatgct gattgggcgg aatgccgcgt ggatcgcaaa      3540
     tctaatagcg gatttctgtt caagtattgt ggtggcacca tatcatgggc ctgccgcaaa      3600
     cagtcctgcg tttccttgtc aactgcggag gccgagtttg tcgccttgtc ggaagcttct      3660
     caggaagcaa tctggcttca gcggctacta cgcgatctgg gtgagaacgt tccaacagtg      3720
     caactaaatg aggacaatca gtcttgtttg aaaatgctgc agtcggagaa gtttagcaac      3780
     aggacaaagc atattgacac gaggtacaat tttgccaagg acttgtgtca aaccggcgtt      3840
     atcaagtacg tttattgccc gtcagaagtg atggtagctg atctgctcac caagccggtg      3900
     gcacgtattc gtgttgaaca acttcgacgt ttgagcggcc tagaggatta gaaagccggt      3960
     gttgaggagg ag                                                          3972
//
ID   Copia-54_AA-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   19-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-54_AA_;
KW   Copia-54_AA-I; Copia-54_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-250
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
SQ   Sequence 250 BP; 66 A; 53 C; 50 G; 81 T; 0 other;
     tgtagaagta ctggcaacac ggcatcagtt gttttggtaa tttaagagta aaaactaccc        60
     ataccacttt acagtgtatt ttgttctatt accgctcgat ctacttcctg tcgcataacc       120
     aaaagaaaac tcgagaagaa taaacgtgtc ctaaaagtag tgcgttgtaa gtgttttgtt       180
     ccgtagtccg attctcgata tttcgtccga ttccgttcgt tcgtgcgtgt ccgcctggta       240
     aatgtccata                                                              250
//
ID   Copia-55_AA-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   supercont1.168;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-55_AA_;
KW   Copia-55_AA-I; Copia-55_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.168; Positions 1202299 1202088.
XX
SQ   Sequence 212 BP; 56 A; 55 C; 33 G; 68 T; 0 other;
     tgttgggaat gtcaatttcc tatcccttat agtcaaaccc cattgaccga cccctcgaca        60
     gtgagctgtc attccatacc ggaagctgac aatatttttc attctaaaac tgtacctcaa       120
     agagaaaaca cgttattcat taaaactcgt tcgttcaact aagttgttgc gtttctcttt       180
     gtgtgattcc gttaccactg cccgaattcc ca                                     212
//
ID   Copia-56_AA-I repbase;    DNA;    INV; 4056 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 24.04, Created)
DT   23-JAN-2019 (Rel. 24.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-56_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4056
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4056
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4056 BP; 1124 A; 759 C; 1200 G; 973 T; 0 other;
     ggttatcggc ccagtgcagg ataagtgaag aaaagtgcag aacctgaaaa gaagcgtttt        60
     atcgagaaga attgtgcgag tggtattttt ctgagctcga accgcgtgaa gtcgccggtg       120
     tgttgcaaaa tggcggacgg tgcaaaaatt tcgttcccca agttgaacca aacgaattgg       180
     gcttcttgga agcaacgtat ggaatggttg ctagagaagg aggatttgtg ggaagtgatt       240
     agtgccgcga agccggaacc agttaccgac gagtggacga gccgtgatcg gaaagctcgc       300
     gcgaacattg gactttttct cgatgaaagc caattcaagt tggtgaagaa tgctcaaagt       360
     gctagtgaaa tgtgggttgc tttgcagcgg caccacgaaa aagccaccat gtctaccgta       420
     gtgcattatt tgaaccaact gtgcagtgca aatatggccg aaaatggaaa catagaagag       480
     catttaaatg cgatggaaga gttgttcgat aagttgattg ctgcagggca gaatttggat       540
     gagtcgttgc aaatagcaat gattttccgt agtgttcctc cgtcgtaccg gagtttggtg       600
     caaagcttgc agtgtcgacc ggacgctgac tggacggttg tgttggtgaa agctcgcctg       660
     ttggatgagt acaaccagcg tcgcgagaga agtgaagtgt tgtcgagtga catgaaagct       720
     ttgaggctgg atgcaagtgg gagcaaacaa gaaaaagttt gctatttttg caaagagccg       780
     ggacattttc gtaagcattg caagaagctg caatccagga agagtgtttg tgaaaatgag       840
     aagaagcatc gctatcggaa ggatgacaac cacaatggtg gaaatccgaa agcgaaacaa       900
     gccaacgacg cgcgcggctc gggtggttcc gtatgcttta tggctggtga tgtgatgcca       960
     aactgttggg tgatagacag tggggcgacg cgtcatatga cgagtgatcg atcgtttttt      1020
     gcgacaatga acgaaaatga aaattcacgc gttacgcttg ccgacgggaa caaatcgaaa      1080
     gtgtgtggta tcggtgaggg catcgttttc agtgagaacg gacatggtga gcgtgtggaa      1140
     gtaatattga aaaacgtact tttcgtgccg gaacttgatg gtggtttgat ttcggtgagc      1200
     caattggcgg cgaagggttt cattgccaaa tttggtgcgt ccgcgtgtga gatccagaat      1260
     gcacaaggtt ggtgaaacag tagtggtcgg tgataaggtg agcaaccttt acaggttgcg      1320
     tattcatgag aagtcgctga aagctggcgg cgaacatgat gagcggtgcc agcatacttg      1380
     gcatcgtcgc attggccatc gtgacccaga cgtgctgagg cggatcgaag cggaagatct      1440
     ggtaagtgga ttctcattac atgattgtgg ggctcgcata gtttgtgaga gttgcttaaa      1500
     ggggaagtta gcgagaaagc ccttccctgc gataacgggt cgtaagacga caaaacccca      1560
     ggaattgatc cacactgacc tctgtggacc aatggagacc actacaccat ctggaaaccg      1620
     ctacttgatg acgcttatag acgactatag tcggtacaca actgtgtacc tgctgaagaa      1680
     aaagtcggag gcctcaggaa agattcagca gtacgttcgc tgggtgcaaa atcgcttcgg      1740
     acggaagccg ctcgtcatcc gatcggacgg tgggggcgaa tacatcagtc aagagctgcg      1800
     gcagttttat gaggtagaaa gcataaaggc tcagttcact acgccgtatt cgccacagca      1860
     gaacggcgta gctgagcgga gaaaccgata tcttcaggag atggcgattt gtatgctgtc      1920
     ggatgctggt ttggagaagt tgtactgggg cgaggctgtt atgacggcgg cctatcttca      1980
     gaaccggttg ccatccagag ttgtaccgag gactcctttc gagctctgga caggacgcaa      2040
     acccgatttt caactactgc gtgtatttgg gtgtgatgca tatgtgcatg tacctgatgc      2100
     taagcgatcg aaactagatg agaagtctgt caagctaact tttgttggtt attccgagga      2160
     ccataaaggg tatcgttttc ttaaccgagc taccaatcgt gtgatcgtca gtagagatgc      2220
     aagattcatc gagcttggta atggatcgga gcaggtgagt gagaggaagc ctgtagagcc      2280
     ggatagtttg gatgactcga ttgaaatcct gttgaatgct gatcaagatg ttgctggcaa      2340
     tggtgaatct tcgggtgagt cagatggttg gaattcggct gaagacgatt atgttcagga      2400
     acaggagcaa cgacaggagg agcaatcggt acagcgtgat cgaagggtga cacgaggtgt      2460
     tatgccgatg cgttttgatg attttgttgt cggtatagcg aatgtttcat cagtggaacc      2520
     aacggattac cggaaggcgt tggagatccc gaaatggaag gaagcgatgg attcggaaat      2580
     tgagtcgcac cgcaccaacg aaacatggaa actggtgaat ctaccggagg ggagaaaggt      2640
     gattggatcc cgttgggtat tcaaaataaa gcgtagtgaa agtggtgaga ttgtaaagca      2700
     taaggcaaga ctggtagctc aaggctacaa ccaacgctac ggaattgatt atgtggatgt      2760
     gttcgctcca gttacacgac aagaaacact gcgggcaatg ttggctgtgg caggcaagga      2820
     gcatatgata ctacagcacc tggacgtgaa aacagcgtac ctgcacggta caatagaaga      2880
     ggagatcttc atgagacaac cgtctggata tgaagtcgca ggtaaagagg atatggtgtg      2940
     ccggctcagc aagagcatct atggacttaa gcagtcggca cgctgttgga atcgtgctct      3000
     acatgcaacg ttgctgaagc tgaacttcga acagtgtgag tcggatccat gcttgtatgt      3060
     gcggcgtgaa ggtgcgaaga cggtgtatct tctcgtatat gtcgacgaca ttttagtggc      3120
     gtgtaaggaa gcagctgtga tagatgttgt gtttcaagaa ctacgaaagg attttgacat      3180
     tacaaatctc ggaaaagtta agcaattttt gggtcaggag gttcagtgca atggtggatt      3240
     ttacagtcta cgtttaacaa actacataga taatttggtc gagaggttcg gtttgaagga      3300
     ttgtaatcca gcaaaatcac caatggaccc gagctacatc aagtcggaca ataatagcaa      3360
     gccgttcgaa gacacaacaa agtaccgcag tttagttggt gctctcctgt atgtggctgt      3420
     gaacgctaga ccagatgtgg cggttagtgt atccctactt ggaagaaaag tgactgctcc      3480
     gacagaaatg gattgggtag cagcaaaacg ggtggtgagg tacctgaaag gcacccgaga      3540
     atacagagta gaattcggag ccgggaaagg gtgttctctc ggaggctact cagatgcgga      3600
     ctgggcaggc gatcaagtga gtcggaggtc tacaagtgga tacattttct tcttcggagc      3660
     aggacctgtc gcatgggtta gtcacaaaca atcatgcgtc agcctatcct ccatggaagc      3720
     ggagtatgtg gcgttaagtg aggcgtgcca ggaacttctc tggctacgtc gattgatgga      3780
     agaccttgga caagttcagc agtgtacaac aatctacgaa gacaaccaaa gctgtctcag      3840
     tttcatcaac gcggaaagaa caagtaagag atcgaagcat attgatacga agcggcattt      3900
     catcaaagat ttggtcgatc aacgtgtggt gtgtctgaag ttctgtccat cagaaaggat      3960
     gatagctgat atactaacaa aaccgttggg taccattatg tttcggaaga tgttggaaag      4020
     taccggcctc accggttagt gatcattgag gaggag                                4056
//
ID   Copia-56_AA-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   AAGE02023339;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-56_AA_;
KW   Copia-56_AA-I; Copia-56_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-283
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023339; Positions   15753   15471.
XX
SQ   Sequence 283 BP; 66 A; 60 C; 58 G; 99 T; 0 other;
     tgtgggaaac taacaatgac cacctcccat atatatgtac cttgactggg taatttatac        60
     acctaatact gtgaactttg tttagagtgt aagcgagctt ccgcgcgaga acagcggaag       120
     acattttgtt attcattcat tcgttattgc tcttcgttcg atacagatgt gaataaaagc       180
     taagttgtgt cgtaatcgga tgtgcgcgtt tcttttatcc gaagttcctt tttcttcttt       240
     ctccgcgagt gatacttcct gctgcctggt gattctgtcc aca                         283
//
ID   Copia-57_AA-I repbase;    DNA;    INV; 4099 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 24.08, Created)
DT   01-MAY-2019 (Rel. 24.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-57_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4099
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4099
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(8), 1424-1424 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 4099 BP; 1296 A; 709 C; 1078 G; 1014 T; 2 other;
     tgtcttattg ctagctctgc taataggtta tgggcccaga gtaattgaag ttccttgttc        60
     gttacgcaag cagtccgaaa tatcgctgaa atgggtgatg acgagaagtt cctgcgaatc       120
     aagcctttcg atggtacgaa tttcaataac tggcgattca gacttctggc gtttctggag       180
     cagttagaag ttgtacattg tatcgagaag gaagctatcg aggaagactt ctgggaagtt       240
     caggaggtag attcggctgc tgtgaagtta gaaaaggagc agaaaattgc aaagcgaagg       300
     aaggaagata acaaatgtcg atcggtgctg attggagcag ttgcagacag tcacctcgag       360
     tatataaagg ataagaggac cccgaaacaa atttgggacg ggctgcatga agtgttccag       420
     agaaaaagta ttacaaatcg attcatactc aagaggaagc tgctagagat gaagcacgat       480
     gaccggtcaa gtcttgaagc tcatttcttg cggtttgatc aactggttcg cgaattgaag       540
     tctaccggag caaaaatgga tgaagaagat gtagtctgtc atctgatgct gacgatgccg       600
     gtatcctatg attctgtgaa cacagcgttg gaagcagtat ctgagaagct taccttggag       660
     ttcctcaaga gcaagtatct agatattgaa tcgaagcgta gagggcggaa agtttcaccg       720
     agccgggagc tggatgaagt tgcgttcgct ggaaaaacag gaaaatccaa gctaaaatgt       780
     ttcggctgcg gcaagattgg ccataaacgt gcggattgtc gggaaactgg agctcgccaa       840
     gattttgaaa gattcaaaga taaaaaacaa tcaagaacgg gagctgttgc gaagacggtt       900
     tcgttcgttg ctggttctgg agaaaggaag aaatgttggt atcttgatag tggcgcctct       960
     gaccatatgt gcaccagaaa gatatgttcg agaaactgga ggaactagac aagccagtcg      1020
     tcattgctac tgcaaagaaa ggagtgaatc gattgccaag cagaagggag gattaatatg      1080
     ttttcaacgt cggagggagg aaaattcata ttcttgtgaa gatgtattgt tcgttccgga      1140
     tctggcgctg aatttaatgt ctcttcgaag gttggaaaac tccggtaaga aagtcgtgtt      1200
     tcaaaatgga aaggtagcgg ttgaagatca agataaggac gtagtggcta ctggcaagca      1260
     gtctggtgtg ctgtatgtaa tggattttga attgccatca agttcaacgg caggtaatgc      1320
     tatggttacg ggcagaataa gcaaacaact ggaaatttgg catcaacgtt tcggtcatct      1380
     tggacacgat aatctgtgga agctggtccg aaatcaaatg gtagatggaa tggagctgat      1440
     tgatgctgat ggaagtgata gcgaaattat ctgtgaacct tgtctggccg ccaagcaaac      1500
     acgggagcct tttgaaaatc gggatggaaa acgtacgatg cgtccattgg agttggtgca      1560
     tagtgatctc tgtggcccga tttcgcctgt atcggtggat ggaatggagt acttcatcac      1620
     tttcatagat gactatacgc atatgaccgt ggtgtaccta ctgaaatcaa aagatgaagc      1680
     gattgactat ctgatggcgt atgaagcgat ggcgagtgcc cattttggag tgaagatatc      1740
     tcgtttaaga tgcgacaatg gaggtgaatt cggaagtaag aaattgaagg cattctgcag      1800
     acagaagggt atccagcttg aaatkaccgt tccttatacg ccggaacaaa acggtgtcag      1860
     cgagagaatg aacaggacta tcattgagaa ggcaacagca atgctttcag gaagtggagt      1920
     aacgaagcga ttgtggggtg aggcagtata taccgccaca tatctgacga accggagtcc      1980
     aacagctgca attgaaggaa gcaaaactcc gttcgagctg tggaatcasa aaaagccaaa      2040
     cgtaagtaag ttgagaatat ttggaagcga atgttttgtc catgtaccga aacagaagcg      2100
     taggaagctg gacgataaaa tggaaaaggc agtttttgtc ggatacgcgc caaacggata      2160
     ccgagtatgg aatggaagaa aagtattcgt cgcacgtgat gttgtcttca acgagaagca      2220
     atctgaaata aagcaagtca gtgatgaacc gagatcggca aggcatcaag acaatagcaa      2280
     gctaatagta gtatgtgacc atgttcaaca acccgaaaca agtaacagag acccgtcgga      2340
     tttgcaagaa cctgaacaac caaatatcga tgaggaattg gatgaaacat tgatcggtga      2400
     agcggccgga ggagatgaat ttggaattga tgaagctggt gaagttaacc gtggcaatga      2460
     gttacgccgg agcgaccgaa accggtgtcc gccagagtgg tacgacgagt acaaaatttc      2520
     tgcatttgca ttgagtgctg aagaatttgt agataatatt ccgagtgaca tagcagtgct      2580
     gcagaagcga gatgattggc tgttatggga agaagcgatc aatgaagagt tagcgtcttt      2640
     gaataaaaac caaacttgga ctctaacgaa tttaccagct ggacgaaaag ttatcagtaa      2700
     caagtgggta tttacaatca agcgagatgg aaatggagat gtgcaacgct acaaggctcg      2760
     actagtcgcc aggggattta cacaagagaa aggatttgac tactcggaaa cctactcacc      2820
     tgtggccaag atgacaactt taagaattct gctggctatt tgtaatgaac gagatttaca      2880
     tatccatcaa atggatgtaa aatgcgcttt tctaaacgga cacttgacgg aggaagttta      2940
     tatgcaacaa cctgctggct tcaagaaagg agatcaagtc tgcagactga ataaagcaat      3000
     ctatggtttg aagcaagcgt cgaggagctg gaacatgcgg ttccactcgt ttattaccaa      3060
     gttaggattc agaagaagcg agcaagatca atgtttgtat tactggacgg atcaagcaat      3120
     cacagtatat ctagtgatat atgtggacga tattttgata gcaagcacat cggaagcaat      3180
     aatcgcaaat ttgaagaaaa aattgtccat ggagtttgaa atgaaggatc ttaaggaggt      3240
     aaaaactttt cttggtctca acatacaacg ggaccggaag aatggtataa tgaagataga      3300
     tcagaagcag tacgtcaaga aaattctcga gcgttttgga atgaaggact gtcgacctgc      3360
     gtctgttcca atagatccac atttgaagtt gctgaaatgt gaagatgaaa cacaattcac      3420
     gacgaaacca tataaggagc tcataggatg cctaatgtat ttaatgatta cgtcaagacc      3480
     ggacatttgt gcagcggtga gttattttgc tggttttcaa tgctgtgcta cagatgaaca      3540
     ttggacatac ttgaagcgta tcctgatgta tttgcggggc acagcagatt acaaattgga      3600
     atttcgtcgg tctactactc cagaaacatt atgtactttt gctgatgcgg attggggaaa      3660
     tgatccaaat gatcgtcgat ctgtatccgg atatgtcctg aagctgtatg gagcaacaat      3720
     ttcgtgggca acaaggaagc aagcatccat agctttgtct acaacagaag ctgagttgat      3780
     ggccctatgt caagcaagtt gtgaagcaat atgggtcgtt aatttgctga aagtcttgga      3840
     tgtagaagtg aagtttcccg ttaccgtcta tgaagataat caatcctgca ttgccatctg      3900
     cgtagaacca cggaaacaca ggagaatcaa gcatattgac atccagtact ttttcgtaag      3960
     agaattgatc cagaaaaatc aaatacaact gcagtacaaa ccatctgagg agcagattgc      4020
     cgatgcgatg acaaaaggcc ttcctgcccc tagattccga aagttgcgtg agttattagg      4080
     attaattaat tgaggcggg                                                   4099
//
ID   Copia-57_AA-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   01-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-57_AA_;
KW   Copia-57_AA-I; Copia-57_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-136
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
SQ   Sequence 136 BP; 46 A; 29 C; 19 G; 42 T; 0 other;
     tgttgagaaa caattaatca tagtatgcat agccctagcc ttgataaatg aatgtaaccc        60
     tgacaatgta ataaaacttt cacttagtta tcaaccacca accactgtgc atgtcttatt       120
     gctagctctg ctaata                                                       136
//
ID   Copia-58_AA-I repbase;    DNA;    INV; 4194 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   28-JAN-2019 (Rel. 24.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-58_AA_;
KW   Copia-58_AA-LTR; Copia-58_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4194
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2590-2590 (2012).
XX
RN   [3]
RP   1-4194
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   LTRs are 100% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..4191
FT                 /product="Copia-58_AA-I_1p"
FT                 /translation="MDFSKVGVIRLNNRNYRSWAFKVQMLMMREGTWRYVD
FT                 PGVAPAPVTPEWTEGDSKARATIALLVEDNQHNLIMSKSTAKGTWDALKSH
FT                 HHKATLTGKVSLLKEICSTNYREGENMEEFLYGMEELYSRLENSGEKLSAN
FT                 MQVAMILRSLPKAFDALTTALESRSDQDLTMELVRAKLIDESEKLYGGKAQ
FT                 EEHVLKAKHETKPAGACFFCGKFGHKKRECKEFLSRKCTGDSDDKKKKKNK
FT                 QKQEEKVKQVRENDQRSFTFMVRRHDSRVSRSWLVDSGATSHMCNDRDAFT
FT                 TIENVSRSSVTVADGNENRVEGVGDCLIKCVNDSGETIELTLRGVLYVPTL
FT                 EGSMISIGKLASKGVRAVFDNTSCKLVYENTVVAVADKVNDMYWLQVAEDR
FT                 VMKSESKKHTKKCQHIWHRRLGHRNPEVLGEIQRKDLVTGLNVVDCGIRWT
FT                 CECCIEGKMARPSFPQVAEKTSTQVLDIIHSDVCGPMEETTPGGCRYYLTL
FT                 IDDHSRYTFVYFLKKKSEVEDKIREYVRLVENQFGRKPRVIRTDQGGEFSS
FT                 KTLRQFYANEGIKAEFTAAYSPQQNGVSERKNRSLSEMGRCMLLDAGMHKR
FT                 FWAEAVNTACYLQNRLPSAAVDRTPYEIWFGRKPDLNYLRLFGCVGYVMIP
FT                 SAKRKKLDVKAVKMRFVGYSAEHKAYRMLNTKTGEIQISRDVRFLELDDGS
FT                 KNELPGYCKLEDNLEVGEEVEWSLDSTAKQANGPQELQVADDTLSEGDFYG
FT                 WDDEDDDWPRGFWHDNDNDWLRGLWNDDDDGEPEAVNEEPTPRRSQRATAG
FT                 VPPVRYSGGVNVVKQAFVEPRSYKEAVSCPQSVEWKLAMAEELQSHRENAT
FT                 WEIVELPAHRKAIGSKWIYKCKADENGDLVRFKARLVAQGFCQKYGTDYDL
FT                 VFAPVVKQITFRTMLVIASKRKMLTKHVDIKTAYLHGKLQEEIFMRQPPGY
FT                 ESGNPNEVCRLRRSIYGLKQAARVWNMKIDEVLKRMGFYQSKADPCLYIRQ
FT                 KSGKSIFVLIYVDDVIVICYTEEEFAEIVQVLKQNFTISVMGNLRFFLGIR
FT                 IRYDDGRYCIDQQAYLERVLDRFGMQDAKPSKYPMDPGFLKQKEESSRQLS
FT                 SPTAYQSLIGALLYVAVTTRPDISIATSILGRRVKAPSEADWNEAKRVLRY
FT                 LKGTLDKVLCLGCDAQKLECFVDADWAGDTSDRKSNSGFVFKFGNGLIGWG
FT                 CHKQKCVALSSTEAEYVALAECLQEIKWIQKLMTDIGEQLVFPIPVHEDNQ
FT                 SCIALTRGDRAERKAKHIDTKYNFIKDMVRDGIVQLIYCPTEQMEADLLTK
FT                 PLQAVKLRQLREAIGIKSFNVEE"
XX
SQ   Sequence 4194 BP; 1183 A; 875 C; 1186 G; 950 T; 0 other;
     ggttatgtgc tcagcattgg ggccagtaat agttaagaag tacgcgacgc gattcggaaa        60
     agtgtttttc ggtgtgaaaa aaagggaaga ctttgtccga gaaagtacgc ggagtggcgg       120
     cgaaatagtt tttttttgcg gtatcgaaag tgtttcgttc ggaaaacatt cgtgtgagca       180
     aaaaaaatgg atttttcgaa ggtgggcgta attcggctga ataaccgaaa ctatcggtca       240
     tgggctttca aggttcagat gctgatgatg agggaaggta cgtggagata cgttgacccg       300
     ggtgtcgcgc cggcaccggt aactccggag tggacggagg gtgattcaaa agcgcgagcc       360
     accatcgctt tgttggtgga agataaccaa cataacctca tcatgtcgaa aagcacggca       420
     aaaggcacat gggatgcgct caaatctcat caccataaag ctactctcac tggaaaagtt       480
     tcgttgctca aagagatttg cagtacgaac taccgcgaag gtgagaatat ggaagaattt       540
     ctgtacggta tggaggagct ttattctcgg ttggagaatt ctggcgaaaa gctttccgca       600
     aacatgcagg tcgccatgat tttgcgaagc ctaccaaaag ctttcgacgc tcttaccacc       660
     gctctagaga gtcgttcaga ccaggacttg acgatggaac tggtgcgtgc aaaactcatc       720
     gatgaaagcg aaaagcttta cggcggtaaa gctcaggagg agcacgtatt gaaggcgaaa       780
     catgaaacga agccggctgg tgcctgtttc ttctgcggca aattcgggca taaaaagcgt       840
     gaatgcaagg agttcctgag tcgcaagtgc accggagaca gcgacgataa aaagaagaag       900
     aagaataagc agaagcaaga agaaaaagtg aagcaagtgc gcgaaaacga tcagagatcg       960
     ttcacgttca tggttcgtcg gcatgacagt cgtgtttctc gttcgtggct agtggactcg      1020
     ggtgccactt cgcatatgtg taatgacaga gatgcgttta cgacgattga aaacgtttcg      1080
     cgatcgagtg tcaccgtcgc ggacggcaac gaaaatcggg tagaaggcgt cggtgattgt      1140
     cttatcaagt gcgttaatga cagtggagag acaatcgaac ttacactacg gggtgtactg      1200
     tatgtgccca cgctagaagg cagtatgatt tcgatcggca aactcgcgtc aaaaggtgtc      1260
     cgtgcggtat ttgacaacac cagttgcaaa ctcgtttacg aaaacacggt agttgcggtc      1320
     gccgataaag tgaatgatat gtactggttg caagtggcgg aggatcgagt gatgaaatcg      1380
     gaatctaaga agcatacgaa aaaatgtcaa cacatttggc accgccgtct tgggcacaga      1440
     aacccagaag tcctcggcga aattcagcga aaagatttgg tgacaggact gaatgtcgtc      1500
     gactgtggca tccgctggac ctgcgagtgc tgcatcgaag ggaaaatggc tcggccgtca      1560
     tttccacaag ttgctgaaaa gacttcgact caagtgttgg atataatcca cagtgacgtg      1620
     tgcgggccca tggaggaaac aacgccagga gggtgccgct attacttgac tttgattgac      1680
     gatcatagtc gttatacctt cgtctatttc ctaaaaaaga aatcggaggt tgaggacaaa      1740
     attcgcgagt acgtgagatt ggtcgagaac cagttcggcc gcaaaccgcg agtaattcga      1800
     accgatcagg gcggagagtt ttccagcaag acgctgcgtc aattctatgc gaacgaaggg      1860
     ataaaagcgg aatttactgc ggcatattca ccccagcaga acggggtttc ggagcggaag      1920
     aaccggtcct taagtgagat gggccggtgt atgcttttgg acgcaggcat gcacaagcgg      1980
     ttttgggcgg aggcggttaa caccgcttgc tacttgcaaa accgtttgcc ttcggcagca      2040
     gtagatcgta cgccttacga aatttggttc ggcagaaaac cagatctgaa ctacctgcgg      2100
     ctgtttggat gcgttggata cgtgatgatc ccatcggcga agcgaaagaa attggacgtg      2160
     aaggcggtga aaatgagatt cgttggctac tccgccgagc ataaggccta taggatgcta      2220
     aacacgaaaa cgggagaaat tcaaattagc cgggatgtcc gttttcttga actggatgac      2280
     ggatccaaga atgaacttcc tggttattgc aagctggaag acaacttgga agtcggcgaa      2340
     gaagtcgagt ggtctctcga tagcactgcg aagcaagcaa acgggccaca ggagctacag      2400
     gtagcggatg acacactttc tgaaggtgat ttctatggct gggacgacga agatgacgat      2460
     tggccgcgag gtttttggca cgataatgac aatgactggc ttcgcggact gtggaacgat      2520
     gatgacgatg gagaaccgga agccgtgaac gaggaaccaa ccccacgtcg ttcgcaacgt      2580
     gcaacagctg gtgttccacc ggttagatat tcaggaggag tgaatgtggt caagcaagct      2640
     tttgttgaac caaggtcgta taaagaagct gtgtcctgtc cgcagagtgt ggaatggaaa      2700
     ttggcgatgg ccgaagaatt acaatctcat cgtgaaaacg caacctggga aatcgtcgag      2760
     ctacctgcac atcggaaggc tattggttcg aaatggatct ataagtgcaa ggcagacgag      2820
     aatggcgatc tcgtccgatt caaggcgcgc cttgtggcgc agggcttctg ccaaaaatat      2880
     gggacagatt acgatctggt ttttgctccc gtagtaaagc agattacatt tcggacgatg      2940
     ctggttatag caagcaagcg gaagatgctg acgaaacacg tggacatcaa aactgcgtat      3000
     ctccacggta agctgcagga ggagatcttc atgcgtcaac ccccgggcta tgagagcggt      3060
     aatcccaatg aagtgtgccg tttaagacgc agtatttacg ggctaaaaca ggcagcccgt      3120
     gtatggaata tgaagatcga cgaagttctg aaacgcatgg gattttacca atcgaaggcg      3180
     gatccgtgtc tttatattcg ccagaagtcg ggtaagtcca tattcgtgct tatctatgtt      3240
     gacgacgtga ttgttatctg ttacacggaa gaggagtttg cggaaatcgt ccaagtactc      3300
     aaacaaaact tcacgatcag cgtcatggga aatctacgat tttttcttgg cattcgcatt      3360
     cgctacgatg atgggcggta ctgcattgac cagcaagcgt atttagaacg agttttggat      3420
     cggtttggca tgcaggatgc aaaaccatcc aaatacccga tggatcccgg cttcttaaaa      3480
     caaaaggagg agagtagccg gcagttgagc tcgccgacag cgtatcaaag tctaattggg      3540
     gctttgttat acgtcgccgt gaccaccagg cccgatattt caatcgctac gtctattttg      3600
     ggaagaagag tcaaggcgcc atccgaggcc gattggaatg aggccaagcg ggttctacgg      3660
     tacctcaaag gtacactgga caaggtactg tgcctaggat gcgatgcaca gaaacttgag      3720
     tgtttcgtag acgccgattg ggctggagac accagcgacc gcaagtcaaa ctctggcttc      3780
     gtgtttaagt tcggcaacgg gctcatcgga tggggatgcc ataaacagaa gtgcgtcgcc      3840
     ttatcaagta ccgaggctga atatgtagcc cttgctgagt gcctgcagga gataaagtgg      3900
     attcagaaat taatgacgga catcggtgag cagctggttt tcccgatccc agtccacgaa      3960
     gacaaccaaa gctgcattgc gttgacccga ggagaccgag cagaacgcaa agcaaaacat      4020
     attgacacga aatataattt catcaaagat atggttcgag atggaatcgt acaattgatt      4080
     tattgtccaa ccgagcaaat ggaggcggat ctactaacga aaccgttgca agctgtaaaa      4140
     ctgcggcagc ttcgtgaggc gatcggcatc aaatcattca acgttgagga ggag            4194
//
ID   Copia-58_AA-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-58_AA_;
KW   Copia-58_AA-I; Copia-58_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-182
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2591-2591 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 182 BP; 49 A; 49 C; 32 G; 52 T; 0 other;
     tgttgaaccg aacggttcga ctggcaacat ctgaaagaaa gccaatctgg caacattgct        60
     acttacatga acagtaaccg aacgtgaata aattcattct tgtctaaagc gtactggcgt       120
     ccacacgtgt ttattctttc tactgagccc ccgtttccct cgttttccgc ttaacctcaa       180
     ca                                                                      182
//
ID   Copia-59_AA-I repbase;    DNA;    INV; 4183 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-59_AA_;
KW   Copia-59_AA-LTR; Copia-59_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4183
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2592-2592 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1615-2139] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           250..4173
FT                 /product="Copia-59_AA-I_1p"
FT                 /translation="MGDTKFAIAKLNGSNWQSWKLRVEMLLARDDLWYVIE
FT                 EDIVDEEERTDEWKKDDRKAKATIILLLEDSQLSLVRNCVYARDTFDALKN
FT                 YHQKTTRSVRVSLLKKLCATNLVENGNVENHLREFDDLFDRLDAAGTSLDK
FT                 DTKICMLLRSLPPSYDGLVTALDSRSDDDISLDVVKSKLVDEYNRQLERKG
FT                 SGTVKSEKAMRSSEGKPGSDIRTCYYCKKPGHVKRNCRKFQAAQKKEGDSG
FT                 NAGSGSGSARAKAAQSDSRSVAFVVGEQKSCSWVIDSGASAHMTNDRSFFE
FT                 SLEEFAGGYITMADGKKTQIMGEGSGIVYGVNGSGETMKIAVNGVKFVPGL
FT                 STNLISVGKLSQKNFRVVFDGNGCEIVDVNSVVVATGFRQGGLYYLRVAEA
FT                 SLAASDGHRVDCQHQWHRRLGHRSWAAAERILKENLATGFKVSDCGMKLVC
FT                 ECCMEGKSARLPFTPVVERKSSRILDIVHTVLCGPMENVTPSGNRYVMTII
FT                 DDFSRFTVTYLMKQKSEAAGIIKEYVSWVENLFGRRPAVIRSDGGGEFINN
FT                 ELRNYYKQKGIRSQYTAPYSPQQNGVAERKNRSLTEMATCMLVDADMEKRF
FT                 WGEAMLTATYIQNRLPSRSIQKTPYELWWGRKPDLSHFRVFGSQAYVHVPE
FT                 TKRKKLDSKARKLTFVGYAIEQKAYRFVDPETDLITVSRDARFIELDNGST
FT                 TVEVSVPEMKKSETVKENEEEIELIPFKEEKEKVREEPVGDESGDYYEAEE
FT                 PGASSTPNVRRSARQNLGALPRHLEDYDLQYSVGFAACAVEGPIDYKEALK
FT                 HRVWRDAMVEEMSHRRNQTWELVPLPEGKKPIGSKWVYKEKRNEENRIVKH
FT                 KARLVAQGFGQRSGVDVENVFAPVTCQATFRTFLSVAAKNNMFVRHLDVKT
FT                 AYLYGSLQEEVYMRQPPGFVVSGKEHMVCRLQRSIYGLRQSARCWNRRLDE
FT                 ALVKIGLKAAVADPCLYVKEVGNVKVILIVYVDDMLIACAKVSEIEKICEK
FT                 LKVEFELTSLGEVRHFLGVEVEREEKGFKLSLRNYINKLLKVFGMEQCKPA
FT                 KSPMDPGYVKTVNTSEQFDDPTNYRSLVGGLLYLAIVARPDIAASAAILGR
FT                 RFTAPRECDWTAAKRVLRYLQATKCYQLQLGGEHQQSLIGFSDSDWAGDTE
FT                 SRRSTSGILFKFGGGCIMWASRRQSCVTLSSMEAEYVALGEACQEALWLRQ
FT                 LLRDLGELQDQPTTIMEDNQGCLAFVRSERVSRKSKHIDTKERFVRELCDR
FT                 GEVRLQYCPTGQMQADILTKPLGPVKHHDFCQLLGLREDRPSEENSH"
XX
SQ   Sequence 4183 BP; 1129 A; 912 C; 1231 G; 911 T; 0 other;
     ggttgatggg cccagcgagc gacccaaaag gaagcattcg gaaagttgaa agatccggcc        60
     ggggaagagc cgggtggcgc cattgtgttt ttcgccactg catcggcagg gcaagcgtcg       120
     tcttgcatac gacgagaaga ttgcgctagt gttagtgaca acaggaatag cgagaagtga       180
     gaaaaaagtt tgccagtgag aagacgggaa gtgttgttgt ttaccccctg taaaagtgcg       240
     ccggtgaaaa tgggtgatac gaaatttgca attgccaaac taaacggcag caactggcaa       300
     tcgtggaagt tgcgagtcga gatgcttctc gcacgtgacg atctgtggta cgtgattgaa       360
     gaagacatcg ttgacgaaga agagcgtacc gatgagtgga aaaaggacga tagaaaggca       420
     aaagccacaa taattctgct gctcgaagac agccagttgt cgttggtgag aaattgtgtt       480
     tacgcgcgcg acacgttcga tgctcttaaa aactaccacc aaaagacaac ccgttcggtt       540
     cgcgtttctc tgttgaagaa gttgtgcgcg acgaatttgg tggaaaacgg gaacgtcgaa       600
     aatcatttgc gcgaattcga cgatctgttt gatcgacttg atgctgcggg tacaagcttg       660
     gacaaagata ccaagatttg tatgctgctt cgcagcctgc cgccttcgta cgacgggctg       720
     gttacggccc ttgatagtcg atccgacgac gacatctcgc tcgatgtcgt gaagtctaag       780
     ctggttgatg aatacaaccg ccagctcgag cgaaaaggta gtggtacagt gaaaagtgaa       840
     aaggcaatgc gttcttcaga aggcaagcca ggcagtgata tccgcacttg ctattattgc       900
     aagaaacccg gccatgtgaa gcggaactgc cggaagttcc aagccgcgca gaagaaagaa       960
     ggtgattccg gcaatgccgg tagtggtagt ggatccgcca gagcaaaagc cgcccagagt      1020
     gactcgcgta gtgttgcgtt cgtcgttggc gaacagaaat cgtgtagctg ggtgatagat      1080
     agtggcgcaa gcgcgcatat gaccaacgat cggtcatttt ttgagtcgtt ggaagaattt      1140
     gcgggtggat acattacgat ggccgacgga aagaagaccc aaattatggg cgaaggaagt      1200
     ggaatcgtct acggtgtcaa cggatccggt gaaacgatga aaatagccgt gaacggcgtg      1260
     aagtttgtcc cgggactgtc tacaaactta atttcggtcg gcaaattgtc gcagaaaaac      1320
     tttcgcgtag tgttcgacgg caacggttgt gaaatcgttg atgttaacag tgttgtcgtt      1380
     gcaacgggat tccggcaggg cggtttatac tacctgcggg tagcagaagc gtcgttagct      1440
     gcatcggatg gccaccgggt ggactgtcag caccaatggc accggcggct aggtcaccgc      1500
     agctgggcag cggcggaaag gatcctcaag gagaacttgg ctaccggatt taaggtgagt      1560
     gactgcggga tgaaattagt gtgtgaatgt tgtatggagg gcaaatcggc tagactgcca      1620
     ttcactccag ttgtcgagcg aaagtcgtca cgcattctgg acatcgtcca caccgttctt      1680
     tgtggaccga tggaaaacgt cacacccagt gggaatcgat atgtgatgac cattatcgac      1740
     gacttcagtc gatttacggt cacgtatctc atgaagcaga agtcggaagc cgctggcata      1800
     ataaaagagt acgtcagctg ggttgagaat ctcttcggtc gcagaccggc cgtcatccgc      1860
     tctgatggag ggggagaatt catcaacaat gagctccgca actactacaa gcagaaagga      1920
     atccgatccc aatacaccgc cccctactcg ccgcaacaaa atggtgttgc ggaacgcaaa      1980
     aatagatccc tgacggaaat ggcaacgtgt atgctggtcg acgctgacat ggaaaagcgt      2040
     ttctggggtg aggcaatgct gactgccacc tacattcaga ataggttgcc atcgagatcc      2100
     attcagaaaa cgccctacga gctctggtgg ggaaggaaac cagatcttag ccatttccgg      2160
     gtattcggta gccaagcata tgtccacgta ccggaaacca aacggaagaa gctggacagc      2220
     aaagccagga agctgacgtt cgtcggctat gcaattgagc agaaagcgta ccggtttgtg      2280
     gatccagaaa cggatttgat cacggtgagc cgcgacgctc ggttcatcga gctggacaac      2340
     ggatcaacga cggtggaagt gtcagttcct gaaatgaaga agagtgaaac agtgaaagaa      2400
     aatgaagaag aaattgaact gattcccttc aaagaagaga aggaaaaagt gcgtgaagaa      2460
     ccggtaggtg acgaatccgg tgattattac gaagcggaag aacctggagc gagttcaact      2520
     ccaaacgtcc gccgctcagc caggcagaac cttggcgcac tgccacgaca tctggaagat      2580
     tatgacttgc aatactctgt gggtttcgcc gcatgtgctg ttgaagggcc tatcgattac      2640
     aaagaagcct tgaaacaccg tgtgtggcgt gacgctatgg tggaggaaat gtcccaccgg      2700
     cggaatcaaa catgggaact ggttccattg ccggaaggga agaagcccat cggttcgaaa      2760
     tgggtatata aggagaaacg gaacgaagaa aaccgaatcg tcaagcacaa agccaggctc      2820
     gtagcccaag gttttggcca acgttccggg gtcgacgtgg agaatgtgtt cgcacctgtg      2880
     acgtgtcaag ctaccttcag aacctttctt tcggtggcgg cgaagaacaa tatgttcgtc      2940
     cgccatctgg acgtaaagac ggcctacctc tatggctcat tgcaggagga ggtatacatg      3000
     cggcagccac cagggttcgt cgtttctgga aaggaacaca tggtgtgtcg tctgcaacga      3060
     agcatctacg ggctgcgaca gtcggctcgt tgctggaacc gacgactaga tgaagcatta      3120
     gtgaagattg gattaaaggc agctgttgca gatccgtgtc tgtacgtcaa ggaagttgga      3180
     aacgtgaaag tgattttgat cgtgtatgtt gacgacatgt tgatcgcatg tgctaaagta      3240
     tccgagattg agaagatttg tgagaaactc aaagtggaat tcgaactgac ctctctggga      3300
     gaagtacggc acttcctcgg agtagaagtt gaacgtgagg agaaagggtt taagttaagc      3360
     ctgcgaaact atataaacaa gttgctcaaa gtgtttggta tggaacagtg caaaccggct      3420
     aagtcgccga tggatccagg ctatgtaaag actgtgaaca ctagtgaaca attcgatgat      3480
     ccaacaaact atcgtagctt ggttggcggg ctgctgtatt tggccatcgt tgctcggccg      3540
     gatatagcag ctagtgcagc aatccttgga agaaggttta ccgcccctcg cgagtgtgat      3600
     tggactgcag cgaagcgggt gctccgctat ctgcaggcta cgaagtgcta tcagttacag      3660
     ctaggcggag aacatcagca aagtttgatc ggcttctcgg attccgattg ggctggcgat      3720
     accgagagtc gccgatctac gtccgggata ctgttcaagt tcggtggagg ctgcatcatg      3780
     tgggcaagcc gccgtcaatc gtgcgtgacc ctgtcttcaa tggaggctga gtatgtggcg      3840
     cttggcgaag cctgccagga agcgctatgg ctcagacagc tccttcgtga tctgggtgag      3900
     ttacaggatc agccgacgac aatcatggaa gacaaccagg gatgtttggc attcgttcgt      3960
     tcggagcgcg taagtagaaa atccaagcat attgacacaa aggaacgctt tgtgagggag      4020
     ttatgcgacc gtggggaagt gcgtctgcag tactgtccca caggtcaaat gcaggccgat      4080
     atcttgacca agccattggg ccccgtgaag caccacgact tctgtcaact gctgggactt      4140
     cgcgaggacc gaccaagtga agagaattca cattgagggg gag                        4183
//
ID   Copia-59_AA-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-59_AA_;
KW   Copia-59_AA-I; Copia-59_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-291
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2593-2593 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 291 BP; 69 A; 72 C; 64 G; 86 T; 0 other;
     tgttgggaag gtacaatgtt cacctcttcc tatatacacc ttgtgccttc ttgcgcaacc        60
     ctatttagag caccttctgt gcgcacgcac cttgattcgg tgtgtgcttt gagagagaga       120
     gagaaacaaa ctcaagtcag ttagtaccag acaagctatc gcgtgtaacg tgttctttcc       180
     atcgttaata aacgtctcgt agttaaagta aattctcgcg tgtgaattgt ttcctcaacg       240
     atccgaaatc cttgccggta ttccgctgcg tcgtagggta ctccgccgac a                291
//
ID   Copia-5_AA-I repbase;    DNA;    INV; 3992 BP.
XX
AC   supercont1.211;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_AA_;
KW   Copia-5_AA-LTR; Copia-5_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3992
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.211; Positions 1838483 1842474.
XX
CC   Positions [1441-1953] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(97..1371,1375..3990)
FT                 /product="Copia-5_AA-I_1p"
FT                 /translation="MDASKVMMERLNNANYEAWRFRIEMLLIREGLWKHIS
FT                 EEVPNPVTSEWKQGDDKARATIALFVKDNQYPIIRDCKTSRETWEVLKKHH
FT                 QSVSLTSRFTLLKRICQLQFRDGDDMEQHFQEMERLFSRLSNAGQKLDSQL
FT                 MVAMVLRSLPESYDTLTTALESRSDDELTMDLVKCKLMDESMKRRKYLSRG
FT                 ESLLRVESSKKQILCHNCGKPGNVEKDCRLQSYQKVDESRRKFKPKARTVK
FT                 EEESSMFCFTVRNKPTAMNSWVIDSGASTHMCAEKRFFKHYKTCSGITVTL
FT                 ADGSEVSVAGKGSGTLQCTVDNRETQVTITDVLHVPKLDANLVSVGKLTEK
FT                 NAEVIFTGETCKILKHGHVAAIAVKKSDLYQLETLNNSKSITAMSVKHAEN
FT                 CIHKWHRILGHRDEEAIRKLVRDDLVTGIQIKCEVNADCECCLEGKMTRLP
FT                 FPKQAGPQSSKMLELVHTDLCGPMNTVTPGGARYFMTIIDDFTRYCTVYFL
FT                 RKKSEVTERMEEYIWMVETRFGKTPAIIRSDCGGEYKSSNLDRLYRQKGII
FT                 PQYTAAYSPQQNGVAERKNRSLVEMARCMLIDAGIDYKYWAEAINTASHIQ
FT                 NLLPTRATARTPYEAWYKKTPDLKHLHIFGSSAFIHIPDQRRTKLEPKGIK
FT                 LTFVGYSDNQKAYRFVDLATNKVYHSRDVRFVNEGKPLKIFSKPSILVEYE
FT                 SILEPSISNDLSIDEGNQEFETEDDQSTSDESYLDCSQGIDTEDELVTLQT
FT                 PPENIRRSERSTKGIPPTRYCEVADMIKKNIPEPRTIKEALASPESELWRA
FT                 AVEEELQSHKENCTWNIVSLPHGRKTIGCKWIFKRKIDETGKVVRYKARLV
FT                 AQGFTQKFGTDYDEVFAPVVKQTTFRTLLSVAHQRNMLIKHVDVKTAYLNG
FT                 ELQETVYMKPPPGCDYEDPSLVCHLQKGLYGLKQAANIWNKKLDSVLRKLR
FT                 FKPSESDPCLYSKHNDDGTMSFIAVYVDDLLIVCKSEKEHEAIFKNLNSHF
FT                 KVTSLGDITHFLGIHVIRSQDGVSLNQKAYIQKLLTRFGLQDAKSSKIPLD
FT                 PGYIQSKEEETERLPNNHQFASLIGGLLYIAVNTRPDIAVAVSILGRKTSN
FT                 PSQDDWNEAKRVLRYLKGTIDHRLVLGIDSSQLEVFVDADWAGDSKDRKST
FT                 SGFLFRYAGGMIGWNARKQDNVTLSSTEAEYVAMADCCKELTWILRLFNDL
FT                 KIVTTLPVKINEDNQSCIKQLSAPNINRRSKHIEKKYHFIRQLKQDGIINP
FT                 QYLPTEDMIADMMTKLLYGIKLSKFRDQARVISSRR"
XX
SQ   Sequence 3992 BP; 1302 A; 787 C; 931 G; 972 T; 0 other;
     agaggttatg ggcctttaag aaactgaaat tttgattttc aattctgaag aactctgaat        60
     ttaaagattg gtcggaactt tggatctgtt ttcaagatgg acgctagcaa ggtcatgatg       120
     gaacgtctga ataacgccaa ttatgaagct tggagattca gaattgaaat gctcctgatt       180
     cgtgaaggat tgtggaagca catctcggag gaggtaccca atccggtcac aagcgaatgg       240
     aagcaagggg acgataaggc cagggcgact attgcacttt tcgtcaagga caaccaatat       300
     ccgattatcc gggattgcaa gacttcgaga gaaacttggg aagttctgaa gaagcatcac       360
     cagagtgtgt ctctcacatc tcggtttacg ttattgaagc ggatttgcca gttacagttc       420
     cgggatggtg acgacatgga acaacatttc caagaaatgg aacggctctt ctcccgccta       480
     tctaacgctg gccagaagct agattctcag ttgatggtcg cgatggtatt gagaagtcta       540
     ccagaatcat acgacactct cacgacggct cttgagagtc gctcagatga tgagttaact       600
     atggatttgg tgaagtgcaa attgatggac gaatccatga aacgtagaaa atatctgtca       660
     cggggagaat ctttattgcg cgtcgaatcc tcgaagaagc agattctttg ccataactgt       720
     ggaaaacctg gtaacgtcga gaaagactgt cgattgcaat cctatcaaaa ggtagatgaa       780
     tcccgccgga agttcaaacc taaagcaaga actgtgaaag aagaagaaag ttcaatgttc       840
     tgtttcacgg tacgtaacaa gccaactgcg atgaactcct gggtcattga ttctggtgca       900
     agtacacaca tgtgcgcaga aaaacgtttt ttcaagcact ataagacatg ctcagggata       960
     accgtcacat tagccgatgg cagtgaagtt agtgttgctg gaaagggctc tggaacactg      1020
     caatgtactg tagacaaccg tgaaacgcaa gtaacaatca ccgatgttct ccacgttccg      1080
     aagttggacg caaatctggt atcagtcggt aagctaactg agaagaatgc agaggtgatt      1140
     ttcactggag aaacatgcaa aattttgaaa catggacacg ttgccgccat tgcagtgaag      1200
     aagtcagacc tatatcaact ggaaacattg aacaacagca aatcgataac cgctatgtca      1260
     gtgaagcatg ccgaaaattg tattcataaa tggcatcgaa tcctagggca ccgagacgaa      1320
     gaagccattc gtaaactagt acgtgatgat ctagtaactg gtattcagat ttagaaatgt      1380
     gaagttaacg ccgactgcga gtgttgcctg gagggtaaga tgacgcgatt gcctttccca      1440
     aaacaagctg gcccccaatc atcgaaaatg ttggaactcg tgcataccga tttgtgtgga      1500
     cctatgaata ccgtcacacc aggaggcgcc cgatatttta tgacgattat agacgatttt      1560
     acccgatatt gcaccgtgta ttttcttcga aagaaatcgg aagtgacaga aaggatggag      1620
     gaatacatct ggatggttga aacacgtttc ggaaaaacac ctgctatcat tcgatccgat      1680
     tgcggcggag aatataaatc aagcaacctg gacagattat accgccaaaa gggaatcatt      1740
     ccgcaatata cagcagccta cagtcctcag caaaatggag ttgcggaacg taagaatcga      1800
     agtctagtcg aaatggcgcg atgtatgctc atcgatgctg gtattgatta taaatactgg      1860
     gcagaagcta tcaacaccgc ctcgcatatc caaaacttgt tgccaactag agctactgca      1920
     agaacaccat atgaagcctg gtataagaag acgccagatt tgaaacattt gcatatattc      1980
     gggagcagtg cgttcatcca tattcctgac cagaggagga ctaagctgga gccaaaagga      2040
     atcaagctta cgtttgtagg atattctgat aatcaaaaag cataccgctt cgtggatctg      2100
     gcaaccaaca aagtctatca cagtagagat gtacgatttg tgaatgaagg aaaaccgttg      2160
     aaaatttttt cgaagccttc catcttagtg gagtacgaat caattctaga gccaagtatt      2220
     tcaaacgatc tgagtattga tgaaggtaat caagaattcg aaacggaaga tgatcaatca      2280
     acgtcagatg aatcttatct ggactgtagt caaggaatcg atacggaaga tgaactagta      2340
     accctgcaaa caccacctga gaatataaga cgttcggaga gaagcacgaa gggaatacca      2400
     cccacacgtt attgtgaagt agctgatatg ataaagaaga atatccctga accacgcaca      2460
     atcaaagaag cgctagcgag tccggaaagc gaactttgga gagctgcggt tgaggaggag      2520
     ttgcagtcgc acaaagaaaa ctgcacttgg aatattgtat ccctgccaca tggacgtaaa      2580
     acaatcggct gtaaatggat ttttaaaagg aagatagatg aaactggcaa agttgttcgt      2640
     tataaggcaa gattggtggc ccaaggcttt acgcaaaaat ttggaacaga ttacgatgaa      2700
     gtttttgccc ccgtggtgaa gcaaactacg tttagaactt tgctgtctgt ggctcaccaa      2760
     aggaatatgc taatcaaaca cgtggacgtg aagacggctt acctaaacgg agaactccag      2820
     gaaactgtct atatgaaacc acctcctggt tgtgattatg aagatccaag tctggtgtgt      2880
     catcttcaga aaggactata tggattgaag caagccgcaa atatttggaa caagaagctc      2940
     gattcagttt tacgaaaact tagattcaag ccctctgaaa gcgatccgtg tttgtattcg      3000
     aagcacaacg atgatggtac gatgtctttc attgctgtat atgtggacga cctactcatt      3060
     gtttgcaagt ccgagaagga gcatgaggcc attttcaaga atttgaatag tcacttcaaa      3120
     gtaacatcac tgggagatat aacacatttt cttggcatcc atgtaatacg ttcgcaagat      3180
     ggtgtgtcat taaatcagaa ggcgtacatc caaaaacttt tgacaagatt tggactacaa      3240
     gatgcaaaat cttcgaagat tccacttgat cccggctata tacagtcaaa ggaggaggaa      3300
     acagaaagat taccaaacaa tcatcagttc gccagcctga tcggaggatt gctgtacata      3360
     gccgtgaata ccagaccaga tatagctgtg gcagtgtcta tccttggacg aaaaactagt      3420
     aacccaagtc aagatgactg gaatgaagca aaacgagtac ttcgctatct caaaggaacc      3480
     atcgatcata ggctagtatt gggcatcgat tcatcacaac tagaagtatt tgttgatgct      3540
     gattgggcag gagattccaa ggatcgcaag tcaacatctg gtttcctatt tcgttatgct      3600
     ggaggaatga ttggatggaa tgcaagaaag caagataatg tgacactcag tagtacggaa      3660
     gccgaatacg tggccatggc agattgctgt aaagaactca cctggatact tcgtttgttc      3720
     aatgatttga agatcgtaac aacattgccg gtgaaaatca atgaggataa tcaaagctgt      3780
     atcaagcaat taagcgcacc gaacatcaac cgaagatcca agcacattga gaaaaaatat      3840
     catttcatcc gacaactcaa acaagacgga attatcaatc ctcaatactt gccaaccgaa      3900
     gacatgatag ccgacatgat gacaaaacta ttatatggaa ttaagctctc aaaatttcgg      3960
     gaccaagcaa gagtaatttc gtcgaggagg ag                                    3992
//
ID   Copia-5_AA-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   supercont1.211;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_AA_;
KW   Copia-5_AA-I; Copia-5_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-189
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.211; Positions 1838294 1838482.
XX
SQ   Sequence 189 BP; 68 A; 32 C; 35 G; 54 T; 0 other;
     tgtagaagga gttgagtagg cgacgaaaaa cttgtacata gcaaccaagt cttgttgatc        60
     aagttaacac acacaatgtc atgtatgagt ataaatagag gagagctcaa taaagttatt       120
     cattcgttgt ttgaccattg aacagttaac aagttgtttc aattcgatct acaacatcta       180
     aacctacca                                                               189
//
ID   Copia-5_BTa-I repbase;    DNA;    INV; 4746 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4746
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 577-577 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..4077
FT                 /product="Copia-5_BTa-I_1p"
FT                 /translation="MFSVQNVNVINLNRFDGKNFADWNFRIRLKLEKDKLL
FT                 SVLEERPKEKSDDNFAELDVKAREIIVQCVSDKVLNSIRGKSSAKGMMDAL
FT                 EATYARKGLAAQVDLKRKLMGLRYTSGKLEDFFEIFFGKVDELKLAGATID
FT                 DQELVSMLLLAMPQKFRHVTSSIDILYSQNPENISLEFVKSKLIQEEISHQ
FT                 TDEPGNTAFFSGKSNKGFNKKRNQDGNGFNRNQHRNDGGDSSSSSSSSYFP
FT                 YKCHFCKKKGHKKQDCPSRKSSGKRESHLCSEQDGEEIAFVTAMESSLEGS
FT                 AVACLSEAHEVTFVVDSGATHHIVSAEVGKYLTNKEDVTFNLTIANKNHSI
FT                 CANQRGTLFARSENRNLRINDVLVCKDLKYNLLSVPRIEGEGCEVIFADGK
FT                 VVFLKNGKPFMHGVKQGNLYLVRVNLKASLNLVANSELMHQRMGHSSHFPC
FT                 KSAVCEVCVTCKMTRKDFKPLAEERKPKSVLEVVSSDVAGPITPETHNGYR
FT                 YYVSFTDHYTHFSFVYPIASKSDVFEKFLEFEALVTAQHGAKISHLRCDNG
FT                 GEYSSNRLQEFCRQKGIHLDYTVPRNPEQNGVSERLNQTVMNMARCMLKQA
FT                 NLDKKFWADAVCTAVYTINRLPSSALQNKIPAELWYGRKVDISNMRVFGSL
FT                 AYSHIPKEDREGKLADRSKPMVHLGYTANGYRLWDPEKRKITTSRSVRFDE
FT                 TKFGIQEKETGDLQTEDIHVHLDTNETTXTEASVRRGTRERKLPRYLEDFE
FT                 TGLMTALFSGQLPSELPSSYKEAVQMGWEDSIQEEFTALEKNHTWDIVSIT
FT                 QVPEGQTLIDSKWVFSEKVVNNVLVKKSRLVARGFLQNDVENLFSPVPRMS
FT                 TIRLMFSIALEHNLQIELLDVKSAFLHSELKESVYMRLPSGLNVPNRKNKV
FT                 CRLRKALYGLRQSSKCWNDELTLRLIKLNFSRSQTDPCLFYINGTYVLVWV
FT                 DDILLFSKDEEFLENLISDLMNTFDMKRFDTKVHFKFLGMDIFRSENSITL
FT                 SQKSMCDKILRQFNMSNCKNQDLPIQPNLNLKVTKCKNECNEKGKEXEEEI
FT                 CPENVPYRQLLGSLMYLATCTRPDLSFAVHFFARYQSNFTQLHWKHLKNVL
FT                 CYVKNTNNLCLVFKKQSVEHKLKAFADSDFGSDPMDRKSISGFFIQLYGNN
FT                 VLWQTKKQQNVALSTCEAEYVALSECAKELKFLSQLLTEVFDENTNPFPIL
FT                 FHDKNLSIPLVCEDNQSAIFVAENLETRRSKHIDIKYHFLRDEVLNNRLRL
FT                 KYVSTMNQPADILTKGLGKQLFLKFIPYLGLEHITKSV"
XX
SQ   Sequence 4746 BP; 1536 A; 846 C; 932 G; 1427 T; 5 other;
     ggttatgggc cgtcgtatcg ttcatcgctc gcggaaattc tgacgaatgg caagtaacgc        60
     gaaattcgga agcctgtgtg tcccggtcgg tcctcgtgtt tgccgtgtgg agtaatggcg       120
     tcggtctagc caattcctaa ccattggata acgtgcgaaa gtgaatggta tcggtctagc       180
     atgttttcag ttcaaaacgt gaacgttatc aacctgaata ggttcgatgg taagaatttt       240
     gctgactgga atttcaggat tcgtctcaag ttggagaagg ataagctgct ctctgttcta       300
     gaggaaagac ccaaggaaaa gtccgatgat aacttcgccg agctagacgt gaaggcaagg       360
     gaaatcatcg tgcaatgtgt ctctgacaaa gtactcaatt ccattagagg aaagtcgtca       420
     gccaagggta tgatggatgc acttgaagca acctatgcaa ggaaaggcct cgcagcgcag       480
     gtagacctga aaaggaaact catgggactt cggtacacat ctggtaagct ggaagacttc       540
     tttgaaatct tttttggaaa ggttgacgaa ttgaaattag ctggagctac cattgatgac       600
     caagaacttg tatcaatgtt actcttagca atgcctcaga aatttcgtca tgtaacctcc       660
     tcgattgata ttttgtattc acaaaacccc gagaatatct cacttgagtt cgttaagtct       720
     aagctgattc aggaagaaat aagtcatcaa acagatgaac ctgggaatac tgctttcttc       780
     tccggtaaat cgaacaaggg ctttaacaag aagcgaaacc aagatggaaa tgggtttaac       840
     aggaaccagc atcgtaatga tggtggagac agttcttctt catcttcttc aagttacttc       900
     ccttacaaat gccacttttg taaaaagaag ggtcacaaaa agcaagactg tccttctcgg       960
     aaatcttcag gaaagagaga aagtcatctg tgttctgagc aagatggtga ggaaatcgct      1020
     ttcgttactg ccatggaaag ttctctggaa ggcagtgcgg ttgcctgttt gtcggaagct      1080
     catgaagtta ccttcgtagt tgatagtggt gcgactcacc acatagtgag tgcggaagtc      1140
     gggaaatatt taactaataa agaagacgtc acgttcaatt taacaattgc taacaaaaat      1200
     cactcaatat gtgctaatca acgcggtacc ctttttgcaa gaagtgaaaa tcgaaattta      1260
     agaattaatg atgtccttgt gtgcaaagat ttaaagtata atctgttatc cgtccccaga      1320
     attgaggggg agggctgtga agtcattttc gcagacggca aagtagtctt tcttaaaaat      1380
     gggaaaccat ttatgcacgg tgtaaaacaa ggaaaccttt atctagtgcg cgtaaatcta      1440
     aaagcttctt taaatctcgt ggctaacagt gagctaatgc atcaacggat gggtcattcg      1500
     tcccactttc catgcaaaag tgcggtgtgt gaagtgtgcg tcacctgtaa aatgaccaga      1560
     aaagacttca agcctctcgc tgaagaaagg aaaccgaaat ctgttctaga agttgtcagc      1620
     tcagacgttg ccggacctat cactccagag acacataatg gatacagata ttatgtgagt      1680
     tttactgatc actatacaca tttcagtttt gtttacccca ttgcaagcaa atctgatgtc      1740
     ttcgaaaagt tccttgagtt cgaggcatta gtaactgctc aacatggagc gaagatatca      1800
     catctccgtt gtgataatgg tggtgaatac agttccaacc gacttcaaga attttgccgc      1860
     cagaaaggga ttcatttgga ctacactgtt cccagaaatc ctgaacagaa cggtgtttct      1920
     gaaagactga atcagacggt gatgaatatg gcacggtgta tgctcaaaca agcaaatcta      1980
     gacaagaagt tttgggcaga tgctgtctgt actgcggttt acactatcaa tcgtcttcca      2040
     tcatcagctt tacagaataa gatacctgct gaattatggt atggcagaaa agttgatatc      2100
     agtaacatga gagtgttcgg atctctagca tattctcaca tccctaaaga agacagagaa      2160
     ggaaaactag ctgacagaag caagcccatg gtacatcttg gatacactgc taacggttat      2220
     cgcctgtggg atcctgaaaa acgaaaaatc acaacctctc gatctgtacg atttgatgaa      2280
     acaaaatttg gaattcaaga aaaggaaaca ggagatttac aaacagaaga tatacatgtg      2340
     caccttgata caaatgaaac cacgsaaaca gaagcttcgg taagaagagg aacacgagaa      2400
     cgaaaactcc ctcggtatct ggaagatttt gaaacgggtc tgatgacagc tttattctca      2460
     ggacaacttc cgtcagaatt accttcgtca tacaaggaag cggtacaaat gggttgggaa      2520
     gactccattc aagaagaatt cacagcactg gagaagaacc acacctggga tattgtcagc      2580
     atcactcaag ttccagaagg tcaaacgttg atagacagta aatgggtttt ctctgagaaa      2640
     gtggtaaata acgtgttggt aaagaaatct agactggtag ctagaggttt tttacaaaat      2700
     gatgtggaaa atttgttttc accagttcca cgcatgtcta caattcgatt aatgttttca      2760
     attgcacttg aacacaattt acaaatagaa ttattagatg ttaaatcagc atttttacat      2820
     tcggagttaa aagaaagtgt gtacatgcgt ttaccgtcag ggttaaatgt cccaaatcga      2880
     aagaacaaag tctgtcgtct tagaaaagct ctttatggtt taaggcaatc tagcaagtgc      2940
     tggaatgatg agttaacttt gcgtttaata aaattaaact tcagtagatc ccaaacagat      3000
     ccttgtttat tctatataaa tggtacttat gttctagtat gggttgatga catactttta      3060
     ttttcaaagg atgaagaatt tttggaaaat cttatttcag acttaatgaa tacttttgac      3120
     atgaaacgct ttgatacaaa agttcacttc aaatttcttg gtatggatat attccgttca      3180
     gaaaattcca ttacattaag tcaaaaatcg atgtgtgaca aaattcttcg tcaattcaat      3240
     atgtctaact gtaagaatca agatttaccc atacaaccga atttaaacct taaggtaact      3300
     aaatgtaaaa atgaatgtaa tgaaaaaggt aaggaaamag aggaggaaat ttgtccggaa      3360
     aatgttccat acagacaact tttaggaagt cttatgtatc ttgctacttg tactagacct      3420
     gatctttcat ttgcagtaca tttctttgcc cgttatcaaa gtaattttac ccaacttcat      3480
     tggaaacacc tcaaaaatgt cctttgttat gtcaagaaca caaacaattt atgtttagtt      3540
     tttaagaaac aatctgtaga acataaactc aaagcatttg cagattctga ttttggatct      3600
     gatcctatgg atcgtaaaag cattagtgga ttttttattc aattgtatgg taataatgtt      3660
     ctctggcaaa caaagaaaca gcagaatgtt gctttatcta cttgtgaggc tgagtatgta      3720
     gcactcagtg aatgtgctaa agaacttaag tttctgtctc aacttttgac tgaagtgttc      3780
     gatgagaaca ctaacccctt tccaattctg ttccacgaca aaaatctttc tattcctctg      3840
     gtctgtgagg ataatcaatc agcaatcttc gttgcagaaa atttagaaac tcgtcggagc      3900
     aagcatattg atattaagta tcatttttta cgagatgaag tcctaaataa tcggttaaga      3960
     ctcaagtatg ttagtactat gaatcaacct gcagacattc tcacaaaagg tttggggaag      4020
     cagctatttt tgaaattcat cccttacctt ggcctcgaac atattacaaa atctgtttag      4080
     aacgattaat tcaaattgaa taatactcaa tgtttcatga aatgcaattt actctatttt      4140
     ccttaagtgt aatttctata tactcactta gtttttcttt tgttttagaa cgattagttt      4200
     aaattgaatg atactcaaag tttcatggaa ttcaatttac tttattttcc cttagatgta      4260
     atctctatat tcacctagtt tttttttgtt ttkgcgaaac aattttcaat caaattaagt      4320
     ttggttttgg aacacagaaa aacaatacat acatactcat aaaacgatca tcaaacgaaa      4380
     acgaacacaa atatacgaaa caatcataaa acgataaasg cacaaatttt aatcaaattt      4440
     tatatacttg atcatgctaa atgtcaaatc tcttcttgta mgttcaatat cgggtatttc      4500
     tttgaaaacc acgcatagtt aaaaagatct tcaggaaact catagtaaca aaaacattta      4560
     gttttttttt tttaaagtca atgcttgtat agctctaaat aagtcctagt ggtcttacat      4620
     cttgcctaca attttctttg tgtcttatta ccaaattcat tatttttagc ctgtagtgct      4680
     taaattgttg ttctctttca aattgtctga gtaattccat cattgtgtga tagaattaag      4740
     ggggag                                                                 4746
//
ID   Copia-5_BTa-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-226
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 602-602 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 226 BP; 42 A; 44 C; 51 G; 89 T; 0 other;
     tgttagagct cgatatatga tgtattatgt tggtagtgtg tagtcatatt aggttggtag        60
     tccgctcgga ccacctgatt ggttgttgtg tacggctcaa ggttaggctc tcacttgctt       120
     gtacttcttc gctgaatata tcatcttacg tcctcgcctg tggcgttctc aggctgaaat       180
     ggtgttactt atttttattt catttcactc gtgattatcc cattca                      226
//
ID   Copia-5_Cfl-I repbase;    DNA;    INV; 4047 BP.
XX
AC   AEAB01013273;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_Cfl_;
KW   Copia-5_Cfl-LTR; Copia-5_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-4047
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01013273; Positions   14120   10074.
XX
CC   Positions [1434-1913] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..1913
FT                 /product="Copia-5_Cfl-I_2p"
FT                 /translation="MAETPRVIVAKLNNDNYESWKYKVELLLIREGLWDVV
FT                 HKEQPAQLDAAWLNRDAQARAMIGLLVEDNQLTHIRSKITAAETWKALRDY
FT                 HQKASLSSKVILLKNLCGMKLAENGNIEEHIINMSVIKDKLEAIGENIKEE
FT                 LFIAMLLGSLPDSYNSLINALESRPEKDLTISLVKGKLIDEYRRRSSNTAA
FT                 MNEAQDKVLKVRDNRKYTRPEQDPMECFFCKKKGHMKRDCKKYKAWKEKTE
FT                 KVNKATTDKDNICFNIDNKDFSKESWYIDSGATSHMTNSKEFFNVSFTTIE
FT                 DRVTVANGKEVKVMGIGSGRISCSNGNINKIITLKNVLYIPGLHSNLLSVK
FT                 KITENGFTIEFKETTCNILKDQEIIVTAESAGNLYKLNVKHEALSSTKMHS
FT                 SKCIHSWHRKLGHRDPDAIRKLAREDMAYGITIQECGIKEVCEDCIQGKLS
FT                 KKPFPKISNRQTKDILDIIHSDVCGPMQTTTPGGKRYVLTMIDDHSSYTEV
FT                 FLLAHKSEVFRYVKEYIGAVKNKFNRKPKVLRSDRGKEYVNKQLTDYLKEE
FT                 GIKIELTAPYSPQQNGKAERKNRYLMEMARCMIIDSGLAKKYWGEAVTTAN
FT                 YLNKVRR"
FT   CDS           2426..4021
FT                 /product="Copia-5_Cfl-I_1p"
FT                 /translation="MTMHEDDEPKTIEEALTGKDRINWRKALDEEYESLIA
FT                 NKTWKLMKPPENVKIIGCKWVFKLKKDEEGRTVRYKARLVALGYSQEYGID
FT                 HHEVFAPVVKQTTLRILLTIANRDKLQVLHYDIKNAFLNADLAETIYMQQP
FT                 KGYTVKGKEQYALKLNKSLYGLKQSANLWNKCISDKLIKLGYTQGKTDTCL
FT                 YIKHDKDIKNYVTIYVDDIIISSNSTEEIIKLERILSNSYNLTKLGNIKEY
FT                 SGIQIQTDKEVYYLHQRKHICNILKTFGLKDAKGSKIPLSVGYENLEDHKI
FT                 LQNNKNFQSLIGSLLYIATCTRPDIKAAVAILSRKLNNPTETDWIEAKRVA
FT                 RYLKYTIDYKLKLGNDRLKEEGLIGYADANWAGSREDRKSNSGYLFKYCGS
FT                 TISWACRRQSCVALSSAEAEYIALSDGCQEMLWLKKLLKDFQEDVKLPVKI
FT                 YEDNQSCIKLARNQNFSKRLKHVDTKYHFVRDLNEGNIILLEYCASEEMLA
FT                 DMLTKAIQHIRLRELSKEAGLETFHGNKDDVIEEEC"
XX
SQ   Sequence 4047 BP; 1628 A; 661 C; 895 G; 863 T; 0 other;
     ggttatgggc ccagaatcgg gattaattaa gagaataaag gtagtataaa ggctgtgtaa        60
     agtacaggtt aaggcgatac aagaagaaag cacgaaaaat ggcggaaaca cctcgtgtga       120
     tagtcgcaaa gttgaacaac gacaattacg agtcatggaa gtataaggta gagttgttgc       180
     tcataagaga aggcctatgg gatgttgtgc ataaagagca accagcacag ctggatgctg       240
     cgtggctgaa tagagacgcg caagcaagag caatgatcgg actcctggtg gaagacaatc       300
     agctcacaca catccgcagt aagataacgg cggcagaaac atggaaagca ttgcgagatt       360
     atcaccagaa ggcttcatta tcaagtaagg ttatactact aaagaatcta tgcggcatga       420
     aacttgcaga aaacggtaat attgaggaac atattataaa tatgtcagta attaaagata       480
     aattagaagc aatcggtgag aatattaaag aagaattatt tattgcaatg ttacttggca       540
     gtcttccaga ttcttataac agtctgataa atgcgcttga aagcaggcca gaaaaggatt       600
     taactatcag tctagtgaag ggaaagctca ttgacgaata ccgcaggaga tcgagcaaca       660
     cagctgcgat gaatgaagca caagataagg ttttaaaggt acgtgataac agaaaataca       720
     caagaccaga acaggatccc atggaatgtt ttttctgtaa gaagaaaggc cacatgaaaa       780
     gggactgcaa aaaatataaa gcttggaaag aaaaaaccga aaaggtgaat aaagcaacta       840
     cggataagga caatatttgc ttcaatatag acaataaaga cttttcaaag gaatcgtggt       900
     acatagattc gggtgccaca agtcacatga cgaatagcaa ggaattcttc aacgtaagtt       960
     tcacaactat agaagataga gtcactgttg caaacggaaa ggaagtcaag gtaatgggta      1020
     taggatcagg aagaatcagt tgttccaatg gaaatattaa caaaataatc acattaaaaa      1080
     atgtcctata cataccaggc ttacacagta atttattgtc agtaaagaaa attacggaaa      1140
     acggattcac aatagaattt aaagaaacaa catgcaacat actaaaggat caagaaataa      1200
     tcgtcacagc agaaagcgca ggaaatttgt ataagctcaa tgtaaaacat gaagcgttat      1260
     catcaacgaa aatgcattca agcaaatgta ttcactcatg gcatcgaaag ctaggacaca      1320
     gggatccgga tgcaatcagg aaactagcca gagaagatat ggcatacggc attacgatac      1380
     aagaatgtgg cattaaggaa gtatgtgagg actgtatcca aggaaaatta agtaaaaaac      1440
     cgttcccaaa aatatcgaac agacaaacaa aggatattct ggatatcata cacagtgatg      1500
     tttgcggccc catgcaaact actactcccg gtggcaaaag gtacgtatta accatgatcg      1560
     atgaccatag cagctataca gaagtgttct tgctagcaca caaatcggag gttttcagat      1620
     acgtcaaaga gtatatcgga gcagtcaaga ataagttcaa cagaaaacct aaggtattaa      1680
     gatcagatcg cggcaaagaa tacgttaaca aacagctgac agattacctt aaggaggagg      1740
     gtatcaagat agaacttacg gcaccttact cgccacagca aaatggcaag gcagagagaa      1800
     aaaacagata cttaatggaa atggccaggt gtatgataat tgatagcgga ttagccaaaa      1860
     aatactgggg tgaggcggta actacagcta attacctaaa taaggtgagg cggtaactac      1920
     agctaattac ctacaaaata gattaccaac aaaatgtaat aatggtacgc catatgaaaa      1980
     atggttttcg cagaaaccaa acttaaagaa tttacacgta tttggatgtg aggcatatgt      2040
     gaagattcca gacgagttaa ggcgcaaatt agatagtaaa gcaaggaagc tacattttgt      2100
     aggatacagt gatcagtcga aagcattcag gctactagat aaaaagacgg acaaaataac      2160
     tatcagtaga gaagttatat ttctggatga aaaacagaac caggaggagc ctcgtaaaga      2220
     aaagaagagt gaagaatcag aagcagaaat agaaatcagc gagaagaaag aagatacatc      2280
     tgcagaagaa aagacacaaa ttgaaaaaga taagaagaag acgaagcaat caacagaaga      2340
     actagatata acggcaacac cacgaagagc atctgaatgg acaaataaag gagtaccacc      2400
     attaaggttt aatgaatttg cgggaatgac aatgcatgaa gacgacgaac caaaaacaat      2460
     tgaagaagca ctgacaggaa aagacagaat taactggagg aaagctcttg atgaagaata      2520
     cgagtcacta attgcgaaca agacatggaa attaatgaaa cctccggaaa acgtaaagat      2580
     tataggatgc aagtgggtgt tcaagctcaa aaaggatgaa gaaggaagaa cagttcgtta      2640
     taaagcgagg ttagtcgcac ttggctacag tcaggaatat ggtatagatc atcacgaagt      2700
     ttttgcacct gtagttaagc aaacgacgct caggattcta ctaaccatcg caaacagaga      2760
     caaattacaa gtactgcact atgacataaa aaatgcattt ctcaatgcgg atctagcaga      2820
     aacaatttac atgcaacaac ctaaagggta tacagtcaaa ggaaaagagc aatacgcact      2880
     aaaattgaac aaaagcctct atggattaaa acagtcagca aatctgtgga acaaatgtat      2940
     ttcagataag ctaataaaac taggatatac acaaggtaaa actgatacat gcctttacat      3000
     aaagcatgat aaggacatta aaaattatgt aacaatttac gtagacgaca taataatctc      3060
     gtccaatagc acggaagaaa taatcaagct agaaaggata ttatcaaatt cgtataactt      3120
     aacaaaactc ggaaatatta aagaatattc aggaatccag atacagacgg ataaagaagt      3180
     ttactattta catcaaagaa agcacatatg taatatatta aaaacatttg gattaaagga      3240
     tgccaaagga tcaaaaatac cactaagcgt aggatacgaa aatctagagg atcataagat      3300
     tctgcaaaat aacaagaatt ttcagagttt aattggaagc ttgctgtaca tagctacatg      3360
     tacgcgacca gacattaagg ctgcagttgc aatactgagc agaaaattga acaacccaac      3420
     ggaaacggac tggatagaag caaagagagt cgcgagatac ctcaagtaca cgattgacta      3480
     caaacttaaa ctcggaaatg acagactaaa ggaagaagga ctcatcggtt acgcggacgc      3540
     caactgggca ggatcaagag aagacaggaa atcaaacagt ggatatttat tcaaatactg      3600
     tgggagcacg atcagttggg cgtgcagaag gcaatcctgt gtggcattat catctgcaga      3660
     agcagaatat atcgcgctga gtgacggatg tcaggagatg ttatggctga agaagttgct      3720
     aaaggatttt caagaagacg tcaagctgcc agtgaagatc tatgaagaca atcaaagctg      3780
     tattaagcta gccaggaatc aaaacttcag caagagatta aaacatgtgg acacgaagta      3840
     tcattttgtg agagatctaa atgagggcaa cataatccta ctcgaatact gtgcgagtga      3900
     agaaatgctt gcagatatgc ttacgaaagc aatacagcac ataagattac gcgaactgtc      3960
     aaaggaagct ggattggaga catttcatgg caacaaggac gacgtcattg aggaggagtg      4020
     ttaaaatcaa gaagacaaaa acggcaa                                          4047
//
ID   Copia-5_Cfl-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   AEAB01013273;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_Cfl_;
KW   Copia-5_Cfl-I; Copia-5_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-182
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01013273; Positions   10073    9892.
XX
SQ   Sequence 182 BP; 51 A; 47 C; 25 G; 59 T; 0 other;
     tgacgccatc taacagttaa cttgtaactc acgtgacaca ctcactagcc ttccggaccg        60
     actcttagac acgttgtaac attcgttctc gttctcagat tttatacaca ataaagtatt       120
     attatatctt aatctaatcc tgtgtacggt gtcttaccac gccctaaaga ttactgtcta       180
     ca                                                                      182
//
ID   Copia-5_CoFl-I repbase;    DNA;    INV; 6658 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6658
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2268-2268 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1327..6486
FT                 /product="Copia-5_CoFl-I_1p"
FT                 /note="gag, integrase, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAVFFCCFSENSENPEPVRDADLDLEREEKEERQQQL
FT                 DAIKEIARNLALASVNFERSTRHVQALVDVCEKMVNAIEDVCEANKTMSEE
FT                 MRKKQEGPPQNKGNLQSSDVSDSFLHSTFRRRDGIGGFSKNFNFSNIPSLN
FT                 AVNMDKGRQSGPKIISDFTFQKPQNSNNSDDILNRLNNTVTNLARSVDSGN
FT                 RSRVKPSFERKYKLTQKGSFTLWLDSLTSELRTIDYIDVLENSRDLEETYG
FT                 FSESNKRKMLVRELIISHLDEHYHKKVINISEPKDIISKIKEFRLAETNVT
FT                 ASSVRARLYNLKIKTNESASEFIDRFDTVVTEYENYGDMVPLSEEEKRSAF
FT                 YHAVSERYKEIRTANSVMRVTTKAEMSLDDIKAYLINLQAENNQSINQFQR
FT                 KTTSEVRANVVTKSTEPKAEKCFRCNREGHRAAGCPLREYNLWYCFYCQAV
FT                 RNHKGDQCPNKDNPKDGYVGKLNKNFRDRDVKKEKSQSKFRDNSKVSKNQA
FT                 KSKASGSKGKKAQKIKAMLTSEGKNDRKNVENNKISFIADSGATEHIVRKG
FT                 FILKDFKKSNREVIRCANKNKSANIIIDGKGDLILKTNSDDRVKLTGVIAA
FT                 KDISHNLLSLRRFADAGLGIYLDDTRLKIFDRETKEELLIGEYKKPNWVID
FT                 LEVQSNTTGCTNQRNIYSCTAHMVNLEEFIQQSQTDISEIQEELHSDVAIE
FT                 IRDSEITKSEIGREKEYELNPEKETTDANSDDNQRLLDEIMSYELNVGAKI
FT                 DKGLLWHMKLGHKSLKYLKQLQKSEAILSDVHFKDNILDCEVCKLAKMERL
FT                 PSPEIRVRATKPLERLHVDTMGPIKPESYPGGNKFIVVIVDDYTKYSKAYS
FT                 AKTKDQAGECLEEFLKHTRNILGKNEKVCYVRSDNGTEFTGGHFSEVVKSE
FT                 NAENEFSPPHTPELNGTAERFNKTLQWLIRALMIDSGLPKSMWSLASDVAT
FT                 NVYNRTPHSGINFETPLQRMDQRLKSHIDKIRRFGCLAYTRVPIPESKFSE
FT                 RAVKTVLVGYTKSGYILWQYETGKFVISRHAKFNEKIVYRDIKNIRKFSQE
FT                 SNHSKNFESHLEFESEKKDLETQNIPEETVKPHRGRPKKRKETQTIDCKEP
FT                 KIRKLPDRKARVNRPTWSHLRLAECVPTSEEPKINQSQASAENTTIENDEI
FT                 SHALLAMTNKDPSSFREAMNSDEKDKWLQGIRDELKSMESNQVWTIVDRPA
FT                 YDESGAKVHTIDSKWVFKRKVNSDGKTVYKARLVIRGFKDRKEYELRETYA
FT                 PVSRLSIVRTAFAIINKYNLDVYQMDVKTAFLNGTLEDDIYMEIPDGLQCT
FT                 SDERKRRVCKLEKALYGLRVSPKRWNKRFTEEVLKLGLEKDINEPCLFTWR
FT                 KENQMVVLVLYVDDILLAGNNAGRILEIKTKLSSVFQMKDLGEPQKFLGME
FT                 IFRDREQTTLTLSQSEYTERILERFNMKESKPQKTPMVTRQVKSRNQKHSK
FT                 DEDEAEVAQLTNVPYREAIGSLLYLASATRPDIAYSVNYLSRKQLQPTMDD
FT                 WKEVKRIFRYLRGTTALGLTYRGQKGDLFAMTDTSFRDLDDSATTGGYVIK
FT                 LFGDPVMWRSHKQSYVTLSTCHAEYLAMSDACQELVSLDKAIRSITGTSMY
FT                 PVTIWCDNLAAVKSTQMDGCHRLKNFDDDLQTIQKQLKQREITGKKCHMAS
FT                 THGDYVKACVLENKVNVRWISTSENEADIMTKPLSSEKHIYFRRKLLNSNF
FT                 "
XX
SQ   Sequence 6658 BP; 2290 A; 1181 C; 1578 G; 1609 T; 0 other;
     ggttatcggc ccaggcgacg tgaagaaggc gggaagcggc aaggagagcg ggagcgagca        60
     caagaggagt ttagttcaga gtaaggtaat ttcagagata cacccaatga agcttcaagt       120
     gtcgtttgaa gcagggtgtc aaacagacag ttcgcttgtg ttttctttct ctctcgtctt       180
     tttcgcgggt ttttcgtcgc gagtgcgtag tgctctgtgt ccgcgtgttt tgtctctctc       240
     tctctctcgc tctcggctgg ctgatcagct aggccgactc ctccatgtag cgtttttttt       300
     cccatgattg ctttagagaa agagcaatta ataagtagag aaacatttca gagtgagaaa       360
     aaaaaagaga cagctacatt cagagtcgtt ttttatataa agcgaatgag gagcggcagt       420
     gtatgcgggg ggagggggcg gggagaggag agatcgggac ggactgccgc tacggcattc       480
     gcgaattccg ggaggacgct cgaaagagta aacacgcggc gcgagtagag cctgacgcga       540
     catgaaaata ctgttgctat tagaagagtt ttgtttttca gagttttttc ttgttgagac       600
     gtatagtata tatatatacc tatatgtatg tatgtatata aaattactca gatgggcata       660
     actaaattgt ttcctcgctt atttttctct ctccgttgcg cgagtgtgtg aaagtgctag       720
     ccgtgcagta cttttacaca cacacaaata aatcgcgcta aaatctgcat tcttaaatgc       780
     agtcgacagt catgcagtgc agacgtcgta tatatatctc ctaaggagaa gttgtcgtga       840
     taccgcttgg tctgtgggtc tgcaccgcgg gtgcactctc gctcgcgtag ctgtcactag       900
     ctgtgcggtg acagcggctg ggcgggacgc ggggagtagg cctgcggccg gtagggctcg       960
     acagctagag ggctacccgt tcttgacagg ccgtgccgtc atgaatcttg ggtgccttca      1020
     acaataatta aatcttgcat gggtattttc taaatacttt tttggtcatg caggtgagat      1080
     ggacaatgaa agcaggagcc gcactccgga gaggccagtc gatgagtcga gtggtgatcc      1140
     gggggagact cgaacagacg acgggtctcc tgagcggtcg cttgcgacct cagaaagagg      1200
     taacttatag atgttcgatg tttattgtag aataaataca gcaaatctca gagtggccaa      1260
     aaaggagtta tatgaccgca aggcttataa cctccaagaa aataaaacca aaaataagat      1320
     gtctagatgg ctgtattttt ttgttgtttt tcagagaatt cagagaatcc ggaacccgtt      1380
     agggacgcgg atttagacct ggagagagaa gagaaagagg aaaggcaaca acaacttgat      1440
     gccattaaag aaatagcgcg gaacttggcg ctagcatcag tgaacttcga gaggtccact      1500
     agacatgttc aggctctggt ggatgtctgc gaaaaaatgg tgaacgccat agaagatgtt      1560
     tgtgaggcaa acaaaactat gtcggaggag atgcgcaaga agcaagaagg cccgcctcag      1620
     aataagggaa atcttcagag ttcagatgta agtgattcct tcttgcattc gacattcaga      1680
     cgcagagatg gtattggggg ctttagtaaa aatttcaatt tttctaatat cccttcactt      1740
     aacgcggtaa atatggataa gggacgtcaa tcaggtccaa aaataatatc cgactttact      1800
     tttcaaaaac ctcagaattc aaataattca gacgacattt taaatcgatt gaataacacg      1860
     gtgacgaacc tcgcgcgttc agtagattcg ggaaatagaa gcagagtaaa gccctcgttc      1920
     gaaagaaaat ataaattaac gcaaaaaggt tcgtttaccc tctggcttga ctctctgaca      1980
     agtgaattga gaacgattga ctatatagat gttttagaaa atagtcgtga tttagaagaa      2040
     acttacggtt tttcagagtc gaataaaagg aaaatgcttg tcagagaact tataattagc      2100
     catttagatg agcactatca caagaaagtg ataaacattt cagagccaaa agatattata      2160
     tctaaaatca aagagttccg attagcagag acaaacgtca cagcctcgtc agtcagagcg      2220
     cggttatata acctcaaaat taagaccaat gaatctgctt cagagttcat agaccgtttc      2280
     gatacagtcg tgacggaata tgaaaattac ggagacatgg tacctctctc agaggaggaa      2340
     aagcgatctg ccttttacca cgccgtctca gagagataca aagaaataag aaccgcgaat      2400
     tccgtcatgc gcgtgacaac aaaagcggaa atgtctttag atgatataaa agcgtattta      2460
     attaatctgc aagcggagaa taatcagagt attaatcagt ttcagagaaa aaccacttca      2520
     gaggtcagag caaatgtggt caccaagagc actgagccca aggctgaaaa gtgcttcaga      2580
     tgcaaccggg agggtcacag ggctgcaggt tgtcccttga gagaatacaa cctgtggtac      2640
     tgtttctact gccaagcagt tagaaaccac aagggcgacc agtgtccaaa caaggacaat      2700
     ccgaaagacg ggtatgtagg gaaattaaat aaaaatttca gagataggga tgttaagaag      2760
     gaaaaatctc agagtaaatt cagagataat agtaaagtta gcaaaaacca ggctaagtcg      2820
     aaagcctctg gtagtaaggg caagaaggcc caaaagataa aagctatgct aacaagtgaa      2880
     ggtaagaatg atcgtaaaaa tgtagagaat aataaaatat catttatcgc agattccgga      2940
     gcaaccgaac acatagtcag aaaaggtttt attttaaaag attttaaaaa gagtaacaga      3000
     gaagtaatca gatgtgcaaa taaaaataaa tcagcaaata tcatcataga tggaaaaggt      3060
     gatttgattt taaaaacaaa ctcagatgat agagttaaac tgactggtgt gatcgctgcg      3120
     aaggatatct cgcacaacct gttatccctt agacgctttg cggatgcagg attaggtata      3180
     tatttagatg acactagact gaagattttt gatagagaaa caaaagagga acttttgatt      3240
     ggcgagtata aaaagccaaa ctgggtcata gatttagagg tgcaatcaaa cacaactggt      3300
     tgtacaaatc agagaaatat ttactcatgt acagcacaca tggtcaatct agaagagttc      3360
     atacaacaat ctcagactga catttcagag attcaagaag aattacattc agacgtcgcg      3420
     attgagataa gagattccga aataacgaag tcagagattg gaagggagaa agagtatgaa      3480
     cttaatccgg aaaaggaaac gaccgatgca aattcagatg ataatcagag gttattagat      3540
     gaaattatga gttatgaact aaacgttggt gcaaaaatag acaagggtct attgtggcat      3600
     atgaagctgg gtcacaaatc cttgaagtac ttaaaacaac ttcagaaatc agaggcaata      3660
     ctatcagatg tacattttaa agacaatata ctggattgtg aggtgtgcaa actggcaaag      3720
     atggaaagat taccatctcc cgaaatcaga gttagagcaa cgaaaccatt agagaggttg      3780
     cacgtcgata cgatgggacc aataaagcca gagtcgtatc caggaggcaa caaattcata      3840
     gtggtcatag tcgacgatta caccaagtat tcaaaggcgt actccgccaa gaccaaggat      3900
     caggctggag aatgcttaga ggagttcctc aaacatacga ggaacatttt aggcaaaaac      3960
     gagaaggtct gctacgtcag gtcggacaat ggaacggagt ttaccggggg acatttttca      4020
     gaagttgtaa aaagtgaaaa tgcagagaat gagttttcac ccccgcatac tccagagtta      4080
     aacggaactg cagagagatt taataagact ctgcagtggc taatcagagc actcatgata      4140
     gactcgggac ttcccaaaag tatgtggtcg ttggcatcag acgttgccac aaatgtctac      4200
     aataggacac cacactcggg aataaacttc gagacacctc ttcagagaat ggatcaaagg      4260
     cttaaatccc atattgacaa aatcagacgt tttggttgct tggcatatac aagagtgcca      4320
     atcccagagt caaaattttc agagagagca gtcaagactg tactggtagg ttataccaag      4380
     tcgggttaca tactctggca atatgagacc ggcaagtttg ttatctccag gcacgcgaaa      4440
     ttcaatgaaa agattgtgta cagagacata aagaatatta ggaagttttc acaggaaagt      4500
     aatcacagca agaactttga aagccattta gagtttgaat cagaaaaaaa agacttagag      4560
     acacagaata ttccagaaga aactgtgaaa cctcacagag gcagaccaaa gaaaagaaaa      4620
     gaaactcaga cgattgactg caaagaaccg aaaattagaa aattgccaga tagaaaggca      4680
     agagtaaata gaccaacgtg gtcgcacttg cgactggctg agtgtgttcc aacatcagaa      4740
     gaaccaaaaa taaatcagag tcaagccagt gctgagaata caacaattga gaatgatgag      4800
     attagtcatg cgctcttagc tatgacaaac aaggatccat caagtttcag agaagccatg      4860
     aactcagatg aaaaagacaa atggctacaa ggaattagag atgaattaaa atcaatggag      4920
     tcaaatcaag tgtggactat agtggatagg cccgcttacg atgagagtgg agcaaaagtc      4980
     cacaccattg actcaaaatg ggtttttaag aggaaagtaa attcagatgg aaaaacagtc      5040
     tacaaggcta gattggtcat tagaggtttc aaggatagaa aggagtatga actcagagaa      5100
     acttatgctc cagtttccag actgtcaatt gtcagaactg catttgctat tattaacaaa      5160
     tacaatttag atgtatatca aatggatgtc aaaacagcct ttttaaatgg cactttagag      5220
     gatgacattt acatggaaat tccagatggt ttgcaatgta cttcagatga aagaaaaaga      5280
     agagtttgca agttagaaaa ggccctttat ggactcagag taagtccaaa aagatggaac      5340
     aaacgtttca ctgaggaagt tttaaaacta ggtctagaga aggacataaa tgagccatgt      5400
     ttgttcacct ggcgaaaaga aaatcagatg gttgtcttgg ttctgtacgt ggacgatatt      5460
     ctgctcgcag ggaacaacgc tggaagaatc ttagaaatca aaacaaaact tagctcagtg      5520
     tttcagatga aagatctggg tgaaccgcag aaatttcttg gcatggaaat attcagagac      5580
     agagaacaga cgacacttac tctttcacaa tcagagtata ctgaaagaat cttggaaaga      5640
     ttcaatatga aagaaagtaa acctcaaaag actcccatgg tgaccaggca agtcaaaagc      5700
     cgaaatcaga agcactcaaa agatgaagat gaagcagaag tagcgcagtt gacaaatgta      5760
     ccctacagag aggcaattgg aagccttctc tacctggcta gtgcgacaag accagatatt      5820
     gcgtactcgg tcaactattt gtcgaggaaa caactgcaac caacaatgga tgactggaaa      5880
     gaagtaaaaa ggattttcag atatctcaga ggaacaactg ccttgggttt aacctataga      5940
     ggacaaaaag gagacctttt tgcaatgact gacacgagct tcagagatct agatgattct      6000
     gctacgactg gcgggtacgt cataaaattg tttggcgatc ctgttatgtg gaggagtcac      6060
     aaacagtcat atgtgactct ctcgacatgt catgcagagt atctagccat gagtgatgcc      6120
     tgtcaagagc tggtgtctct ggataaggcg attagaagta taacgggaac gtctatgtat      6180
     cctgtgacta tctggtgtga taatttggca gctgttaaga gcactcagat ggatggatgt      6240
     catagactca aaaactttga tgatgacctt cagacgatcc agaaacaatt gaaacagaga      6300
     gagattactg gcaaaaagtg tcacatggca agtacacatg gtgactatgt gaaagcatgt      6360
     gtgctggaga ataaagtaaa tgttagatgg atttccactt cagagaatga ggcagatatc      6420
     atgacaaaac ctttgtcctc agaaaaacac atctacttca gaagaaaatt actaaacagt      6480
     aatttttgat cagagaactc agagattaaa atattttatt ttaatgtgat ttcagatacg      6540
     tcaaaccaag gagacagtga tatggagatc actagctcca aatcagagtc ggagtaatct      6600
     tcagacgtgt gaaacttcag agacgattct tcagagcgat caacccaaag gaagggag        6658
//
ID   Copia-5_CoFl-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-258
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2289-2289 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 258 BP; 62 A; 79 C; 48 G; 69 T; 0 other;
     tgttaagaaa aggtgctttg tgctgccgcc tgacgcctct cgtgtgtaac acactataca        60
     gctcgtcaca gctgttcaag cctactcact tctgcccgag cacttgtaca gcgagcatcg       120
     tccttccggc aacacatacc gcccgtggca actcttatta aataaagttt tacgtgttca       180
     cttactacaa gaagggcatt tttgtctgcg acctgtccct cacccttcca ccacctgcaa       240
     taaggcttaa gtccaaca                                                     258
//
ID   Copia-5_CQ-I repbase;    DNA;    INV; 3555 BP.
XX
AC   AAWU01030339;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_CQ_;
KW   Copia-5_CQ-LTR; Copia-5_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3555
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 325-325 (2011).
XX
DR   Genome; AAWU01030339; Positions    7089   10643.
XX
CC   Positions [1472-2002] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..3541
FT                 /product="Copia-5_CQ-I_1p"
FT                 /translation="MTDAKPAPVQVPMLDESNFNPWRLRMLAFLEEHELLE
FT                 CVRTSVGDVAELKERAGEKPEEKTARMKLLDKRIRKDRHCRSQLMARISDA
FT                 QMDHLEEDMSPKDIWDKLHNIHARKSVASRMRIQRQIVTMRYDGGKLQQHF
FT                 LQFEKLIREYRSAVAKLEEIDVICHLFISLGSAFSGAVTALETMSQEDLKL
FT                 DFVKNRLLDEETKKGIESPTPSQSDTAFHGAKPQKKQKCFGCNKEGHRVAD
FT                 CPEKKKPQQSKRKQKSKANVADSGSNRKEVCFVSEANPQQARTRWFIDSGA
FT                 TDHLVRDKELFCELHRLKKPIEIAVAKDGETIQAEHSGTVKVVAVVDGKRV
FT                 NCTIKDALYVPKLRCNLFSVLRVEQAGMRVVFEDGKATVYSGSEIVACATV
FT                 QNKLYEMNFLARHGTEDSSLLTCGRVRKGFVLWHRRFGHLNEQSLKCLVQK
FT                 EMVSGLDLSTAGTDDTIVCESCVVGKQTRKPHPPREGRRSSRVLELVHTDV
FT                 CGPVSPEGLDGMKYFVTFIDDWTHFVMVYLIRSKDEVMECFEEYEALVTAK
FT                 FERPISRLKCDNGGEYRNKRFEGFCKKKGIRMEPTVPYTPEMNPLSERMNR
FT                 TLVEKARAMLADAGVDKKFWGEAMLTAAYLTNRSPTAALEMKKTPYELWES
FT                 KKPDVSNIRVFGSDVFVHVPKELRRKLDDKAWKGTLVGYSHNGYRVWDPKK
FT                 RTVVTARDVDFVESVVEQQQVAQPNSQFVPLESDEESCVDDASCADDGDET
FT                 SEDEFSSAADEPEAEEADGSGRPQRPKNPPAWHKDFEVEYASFALNAMNFI
FT                 EDIPSSVPELKKRDDWHEWRAAMQDEMNSMKRNNAWTLVKLPAGRKTVTCK
FT                 WVFKVKRGDAEKPDRFKARLVARGFTQKPRFDYTETYSPVAKLDTLRAVLA
FT                 LANENRMFVHQMELKTAFLNGELAEEIYMTQPEEFQQGNGLVCKLNRSIYG
FT                 LKQASRAWNDRFHGVISKLGFVRSANDMCLYTRGAGDKKLILVLYVDDILL
FT                 AGTSLKVLEAVKQKLTEEFEMTDEGEIKQFLGMRFERDKLKGVLKISQRDY
FT                 FDGLLKRFRMDDCKPISTPMEHRLRLVKGEEKQRTSKPYRERGFPRLQAPE
FT                 ARGHQVPLPAGAGAAEDDRDRVRALCGATSGHHDQGSTGSCLQGSSRQAGI
FT                 GGDVL"
XX
SQ   Sequence 3555 BP; 839 A; 881 C; 1187 G; 648 T; 0 other;
     agtcgcgttt tacggtcaaa cggaaaagtg cgcggaatcg tcgggcgtca tgacggacgc        60
     aaaacccgct ccggtgcagg tgccgatgtt ggacgagtct aacttcaacc cgtggcggct       120
     ccgcatgcta gcattcctgg aggagcacga gctcttggag tgtgtgcgga cgagtgtggg       180
     tgacgtggcg gaactaaagg aaagagcggg agaaaagccg gaggaaaaga cggcccggat       240
     gaagctgctg gacaagcgca tcaggaagga ccgtcactgc cgttcgcagt tgatggcgcg       300
     gatcagcgat gcgcagatgg accacctgga ggaggacatg tccccgaagg acatctggga       360
     caagctgcac aacatccacg cgcggaagag cgtcgcgagc cggatgcgga tccagcggca       420
     gatcgtgacg atgcgctacg atgggggaaa gctgcagcag cactttttgc agttcgaaaa       480
     gttgatccgg gagtatcggt ccgccgtcgc gaagctggag gagatcgacg tgatttgcca       540
     cctgttcatc tcgttgggat cggcgttctc cggtgctgtg acggcgctgg aaaccatgtc       600
     gcaggaggac ctcaagctcg atttcgtcaa gaaccggctc ttggacgaag agacgaagaa       660
     gggcatcgaa tcgcccaccc cgtcccagag cgatactgcg tttcacgggg cgaagccgca       720
     gaagaagcaa aagtgtttcg gctgcaacaa ggagggccac cgggtggccg actgtcccga       780
     gaagaagaag ccgcagcaga gcaagaggaa gcagaagtcg aaggcgaacg tggcggattc       840
     cggcagcaac cggaaggaag tttgtttcgt gagcgaggcg aacccccagc aggcgcggac       900
     gcgctggttc atcgattctg gtgcgacgga ccatctagtg cgggacaagg agctgttctg       960
     tgagctgcat cgtctgaaga agcccatcga gatcgcggtg gccaaggacg gtgaaacgat      1020
     ccaggcggag cactccggca cggtgaaggt ggtggcggtc gttgacggta agagagtgaa      1080
     ctgtacgatc aaagacgcgt tgtacgtgcc aaagttgcgc tgcaatttgt tttcggtgct      1140
     gcgcgttgaa caagccggga tgcgcgtcgt gttcgaagac gggaaagcga cagtgtacag      1200
     tggttccgaa atcgtcgcgt gtgctactgt gcagaacaag ctgtacgaaa tgaactttct      1260
     ggctcggcac ggtacggaag attcttcgct gttgacgtgc ggtcgcgtgc ggaaggggtt      1320
     cgtgctctgg caccgtcgtt ttggacattt gaacgagcaa agcctcaagt gtctggtgca      1380
     gaaggagatg gtatccggac tcgatctcag taccgccggg actgacgata ccatcgtgtg      1440
     tgaatcgtgc gttgtcggca agcaaacgcg gaagcctcac ccaccgcgtg aaggtcgtcg      1500
     atcgtcgcga gtgctcgaat tggtacacac cgacgtgtgt ggtcccgtgt cgccggaggg      1560
     actcgacggg atgaaatatt ttgtgacgtt catcgacgac tggacccatt tcgtgatggt      1620
     gtacctgatt cgctcgaagg acgaggtcat ggagtgtttc gaggagtacg aggctttggt      1680
     gacggcgaag ttcgagcggc cgatctctcg gctgaagtgc gacaacggcg gcgagtaccg      1740
     gaacaagcgt ttcgaggggt tctgcaagaa aaaggggatc cggatggagc ctactgtccc      1800
     ctacacgccg gagatgaacc cgttgagcga gcgcatgaac cggacgctag tcgagaaggc      1860
     gcgggcgatg cttgctgatg ctggcgtcga caagaagttc tggggggaag ccatgctgac      1920
     ggcggcctac ctgacgaacc gaagcccgac cgctgctctc gagatgaaga aaacgccgta      1980
     cgagttgtgg gagtccaaga agccggacgt gtcgaacatt cgtgtttttg gcagcgatgt      2040
     gttcgtccac gtcccgaagg agttgcgccg taagctggac gacaaggcgt ggaaaggaac      2100
     gctcgtcggg tactcgcaca acgggtatcg agtctgggac cccaagaaac ggacggtcgt      2160
     cacggcgcgc gacgtggact tcgtggagtc tgtcgtggag cagcagcagg tcgcgcaacc      2220
     caactcgcag tttgtgccac ttgaatctga tgaagaaagc tgcgtcgatg acgcgagctg      2280
     tgccgacgat ggagacgaga cttcggaaga cgagttcagc agtgctgccg atgaacccga      2340
     agctgaagaa gctgatggca gcggccgacc tcaaagaccg aagaaccctc ccgcttggca      2400
     caaggatttc gaggttgagt acgccagttt tgcactcaac gcgatgaact tcatcgagga      2460
     catcccgagt tcagtccctg agctgaaaaa gcgggacgat tggcacgagt ggagagctgc      2520
     gatgcaagac gagatgaact ccatgaagcg caacaacgcc tggacgctgg tgaagttgcc      2580
     tgcaggacgc aaaaccgtta cctgcaagtg ggtgttcaag gtgaagcggg gcgacgctga      2640
     gaaaccggac cggttcaagg cgagactggt cgccagaggc ttcacgcaga agcccaggtt      2700
     cgactacacc gagacctact ctccggtggc gaagttggac acgctgcggg cggtgttggc      2760
     gctggccaac gagaatcgga tgttcgtgca ccagatggaa ttgaagaccg cgttcctgaa      2820
     cggtgagtta gctgaagaga tctacatgac ccagccggaa gagtttcagc aggggaatgg      2880
     tctggtctgc aagctgaacc gttccatcta cgggttgaag caagcgtccc gggcgtggaa      2940
     cgaccgattc catggcgtca tcagcaaact cggattcgtc cggagcgcca acgacatgtg      3000
     tctctacacc cgaggagctg gagacaagaa gctgatcctg gtactgtacg tcgacgacat      3060
     cctcctcgcc ggaacgtcgt tgaaagtgct ggaggcggtc aagcagaagc taaccgagga      3120
     gttcgagatg acggacgaag gtgagatcaa gcagttccta ggaatgcgct ttgaacgtga      3180
     caagctgaaa ggagttctga agatcagtca gcgcgactac ttcgatggcc tcctgaagcg      3240
     tttccggatg gacgactgca agccgatctc gacaccgatg gagcaccggc tgaggctggt      3300
     gaaaggagag gagaagcaga gaacgtcgaa gccctaccgt gagcgaggat tcccgagact      3360
     gcaagcgcct gaagcacgtg gacaccaagt tccacttcct gcgggagctg gtgcagcaga      3420
     ggacgatcga gatcgagttc gtgcgctctg cggagcaaca agcggacatc atgaccaagg      3480
     gtctaccggc agttgtcttc aaggatcttc gcgccaagct gggattggag gagacgtgct      3540
     gtgattgagc agggg                                                       3555
//
ID   Copia-5_CQ-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   AAWU01030339;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_CQ_;
KW   Copia-5_CQ-I; Copia-5_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 326-326 (2011).
XX
DR   Genome; AAWU01030339; Positions    6881    7088.
XX
SQ   Sequence 208 BP; 45 A; 64 C; 43 G; 56 T; 0 other;
     tgataagttg gcaaccaccg cactctgttt gcccctacga cgctcaagcc cactgggcac        60
     acgcgggctg ctgctgtttg acagctgcac ttccgctacc agtctgtaac caaacaacaa       120
     agagattaca cgctattttt cttttcgctt aagttaaacc gcgtgtttta ttccggcctc       180
     cccgaaacct ctttaggttg tgggccca                                          208
//
ID   Copia-5_DAn-I repbase;    DNA;    INV; 4640 BP.
XX
AC   AAPP01015573;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DAn_;
KW   Copia-5_DAn-LTR; Copia-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4640
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015573; Positions   36734   41373.
XX
CC   Positions [1637-2137] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1391..4351
FT                 /product="Copia-5_DAn-I_1p"
FT                 /translation="MLNNIPTIQFEAYIACKETNNYRLWHERFGHISNAKL
FT                 LEIKRNNLFSDTSLINNLKLSDELCEPCLRGKQARLPFNHFKDKSHITRPL
FT                 FVVHSDVCGPITPVSLDEKNYFVIFVDEFTHYCVTYLIQHKSDVFNMFQDF
FT                 VAKSEAHFNLKVVNIDNGREYLSNEMRSFCVKKGITYHLTVPHTPQLNGVS
FT                 ERMIRTIIEKARAMVKGAQLDKSFWGEAVLTATYLINRIPSRALVGKEKTP
FT                 YEMWHSKKPILKYLRVFGSTVYVHNKNKNGKFDDKSKKSILVGYEPNGFKL
FT                 WDSINGKFIVARDVVVDETNMVNSRVTKYESFPNDSKENESFPNDIKESKS
FT                 FPNDSKENESFPNDSKENKNFPNDSKENEHFPNDSKESKNILNESKENKKE
FT                 KFPNESRKRKQADPLNDSKGDLESNKNPVIYDGIDNNIDVEVTSRRSERLQ
FT                 KKPQISYNEDDNDLNKFILNAHAVFNDVPKNFDEIKYRSDKSFWEEAIKTE
FT                 LSAHEINNTWTITKKPMDKNIVDSKWVFSVKHDEMGNPVRYKARLVARGFT
FT                 QKYQIDYEETFAPVARVSSFRFMLSLAVQYNLKVHQMDVKTAFLNGVLKED
FT                 IYMKLPQGVLGDSNTVCKLNKAIYGLKQAARCWFEVFEKALKECDFVNSPV
FT                 DRCIYILDRGNIKENIYVLLYVDDVVIATREINRMNNFKKYLMEKFRMTDL
FT                 KDIRHFIGIRIETYEDTIFLSQAAYIKRFLDKFNMSDCNAVSTPLPSKLNY
FT                 EALNSDESCNAPCRSVIGCLMYVMLCTRPDLTTAVNILSRYSSKNNSELWQ
FT                 CLKRVLRYLKGTIDLKLTFKKKDIFNNILVGYVDSDWGGNGIDRKSTTGYL
FT                 FHMFESNLICWNTKRQNSVAASSTEAEYMALYEAVREALWLKSLLNSVHIK
FT                 IEMPIKIYEDNQGCISIANNPSCHKRTKHIDIKYHFVRERVENNEICLEYI
FT                 STDNQIADMFTKPLPAATFMKLRSKLGLRNDV"
XX
SQ   Sequence 4640 BP; 1685 A; 692 C; 900 G; 1363 T; 0 other;
     ataggttatg ggcccagtcc atgccagata gttttgattt aatacgcagt ttctgtgcat        60
     tattgcaaat tcttgtgaaa ttattttttt ttgcttgagg tatctaaact attgcggctc       120
     gttgtgaaat tcattttgta cacatatacc actgcaactc ttgtgtgtgt atacgtgttt       180
     aaagaaaaaa aatggaaaaa tcaaagcgta atattaagcc gtttaacggc gaaaaatatg       240
     cagtttggaa atttagagta cgttcgttgc ttgcagagtt agacgtgctg aaagttgtgg       300
     atgatgaaaa ccctgataag caggatgcca attggatcaa ggctaatcta tgtgcgaaaa       360
     gtacgctcat tgagcacttg agtgactcat ttttaaatgt cgcatctagt gacgtcacag       420
     ctcgtgaaat tttcaagaat ttagacgccg tatatgagcg aaaaagtttg gcttcgcaac       480
     tatcggtgcg caaacgactg ctcacgctta aacactcggg cgagatgcca cttttaaatt       540
     tttttaattt gtttgatgaa ctaataggcg aattgttagc tgcagggcta aaattgagga       600
     gatggacaaa gtttcacact tactgctcac attgccttcg tcatacaatg gcgttatcac       660
     agcaatcgaa acactgtccg aagaaaattt aacattaggt tttgttaaaa acagattatt       720
     agaccacgaa ataaaactta gaagtgatca aaaggacaca agtaaaaagg ttatgaaagc       780
     gctagtccca aataaatata taaataatag taaccaaaat tattcgttta aaaataaatt       840
     ggcaaaacac ataaatcagt ttaaacgtaa gccaattggc aatattaaat gtcaccactg       900
     tggtagggta ggacacataa agaaagattg ttttcatttg aaaaaaataa tgaacttaaa       960
     taaaaataat aataaaaata aaactaatga aaatgaaaat gacaatagac aagctcaaac      1020
     caccacatca cacggtatag cattcatgtt gaccaactgc gaaacggata aatgcaattt      1080
     tattcttgat tctggtgcaa gcgatcatct tattaataac gactcgctgt atgctgatta      1140
     tgaggaactg gagccgccac ttaaaatcgc tgttgccaag caaggccaat tcatttacgc      1200
     taccaagcgc ggtgttgtgc gtttgcacaa taattgtgaa gtgacgctgg aggatgtttt      1260
     atattgcaag gaggctgctg gtaacctcat atcggttaaa cggttacaag aagcaggttt      1320
     gacaacacaa tttgaccgtg atggtgtcac catatccaaa aatggattga caatcataaa      1380
     ggattaaggt atgctgaata atataccaac tatacaattt gaagcataca ttgcatgtaa      1440
     agaaactaac aattatagac tatggcatga gaggtttgga cacataagca atgctaaatt      1500
     attagaaata aagagaaata acttatttag tgatacaagc ctgattaata atttaaaatt      1560
     gtctgatgaa ctatgtgaac catgtctgag aggcaagcaa gctaggcttc catttaatca      1620
     ttttaaagat aaaagccata ttacaagacc tctatttgta gtacattctg atgtatgcgg      1680
     acccattaca ccggtttctt tagatgaaaa gaactatttt gttatctttg tagatgaatt      1740
     cacccattac tgtgtcactt acctcataca acacaagtca gatgttttca atatgtttca      1800
     agattttgta gcgaaaagtg aggcacattt taatctcaaa gtagtcaata tcgataacgg      1860
     tagagagtac ttgtcaaatg aaatgcgtag tttctgtgtc aagaaaggga ttacttatca      1920
     cctgacagtg ccacacacac ctcaattaaa tggcgtatct gaacgaatga tacgaaccat      1980
     tatcgagaaa gcccgtgcaa tggttaaagg tgcacaatta gacaaaagct tttggggtga      2040
     agcagttttg actgcaacat acttaataaa tagaatacca agtagagcac tagtaggtaa      2100
     agaaaagacc ccatacgaaa tgtggcatag caaaaagcca attttaaaat acttgagagt      2160
     attcggatca accgtatatg ttcacaataa aaacaaaaac ggaaaatttg atgataaatc      2220
     aaagaaaagt attcttgtcg gatacgagcc aaatggtttt aaactatggg atagcattaa      2280
     tggcaaattt attgttgcca gggatgttgt tgtcgatgaa accaatatgg ttaattctag      2340
     agttaccaaa tatgaaagtt tcccgaatga tagtaaggaa aatgaaagtt tcccgaatga      2400
     tattaaggaa agcaaaagtt tcccgaatga tagtaaggaa aatgaaagtt tcccgaatga      2460
     tagtaaggaa aataaaaatt tcccgaatga tagtaaggaa aatgaacatt tcccgaatga      2520
     tagtaaggaa agtaaaaata tcctgaatga aagtaaggaa aataaaaaag aaaaatttcc      2580
     gaatgagagt aggaaaagaa agcaagctga tcctctgaat gacagtaagg gagatcttga      2640
     atcaaataag aatccagtca tatatgatgg cattgacaac aacattgatg ttgaggtaac      2700
     aagtagaaga agtgaaagat tacagaaaaa gccccagata tcgtacaatg aagacgataa      2760
     cgatttaaat aaatttattt taaatgctca tgctgttttt aatgatgttc caaagaattt      2820
     cgatgaaatt aaatatagaa gcgataaaag cttttgggaa gaagctataa aaactgaact      2880
     gagtgctcac gagataaata atacttggac aattacaaag aagcctatgg ataaaaatat      2940
     tgttgacagt aaatgggtat tttctgttaa acatgatgaa atgggtaatc cagtcagata      3000
     caaggctaga ttagtagctc gaggttttac tcaaaaatat caaatcgatt atgaggaaac      3060
     atttgcccct gttgcaagag tttcaagttt ccgtttcatg ctatcattag cagttcaata      3120
     taatttgaaa gtccatcaaa tggacgttaa aacagccttt ttaaatggcg tgttgaagga      3180
     ggatatatat atgaagcttc ctcaaggtgt gttaggtgat agtaatactg tatgtaaatt      3240
     aaataaggca atttatgggc ttaaacaagc agctagatgc tggtttgagg tttttgagaa      3300
     agctttaaaa gaatgcgact tcgtgaactc cccagttgat cgctgcatat atattcttga      3360
     cagaggtaac attaaggaaa atatatatgt tttactatat gttgatgatg tggtcatagc      3420
     tacacgtgaa ataaacagaa tgaataattt taaaaaatat ttaatggaaa agttcaggat      3480
     gactgacttg aaagatatac gacattttat aggtataaga atagaaacat atgaagatac      3540
     aattttctta agtcaagctg cttacataaa gcggttttta gataaattta atatgagtga      3600
     ctgcaatgcg gtcagtactc ctctaccgag taaactaaat tacgaagcac ttaactcaga      3660
     tgaaagctgt aacgcgccat gtcgtagtgt tattggatgc ctaatgtacg taatgttatg      3720
     tacacgacct gacttgacta ctgcagtaaa tatcttaagc agatatagta gtaaaaataa      3780
     ttcagaacta tggcaatgtt taaaaagggt tcttagatat ttgaaaggta ctattgattt      3840
     gaaactgact tttaagaaaa aggatatatt taacaatata ttagttggtt atgttgattc      3900
     tgactggggt ggaaatggga ttgaccggaa aagcacaaca ggctatttat ttcatatgtt      3960
     cgaatcaaat ttaatttgct ggaacacaaa aaggcaaaac tcagtagcag cctcatcaac      4020
     tgaagctgag tatatggctc tgtatgaagc cgtaagagag gctctatggc taaaatctct      4080
     tttaaatagt gttcatatca aaatcgaaat gccaattaaa atttatgagg ataaccaagg      4140
     ctgtattagc atagctaata acccttcttg tcataagaga actaaacata ttgatattaa      4200
     atatcatttt gtaagagagc gagtagaaaa taatgaaatt tgtcttgagt atatttctac      4260
     agataatcaa atcgcggata tgtttaccaa gccattgcca gcggctacat tcatgaaatt      4320
     gcggagcaag ctgggactac gtaacgatgt ctgaacgaac gtcgatgaat taatttttta      4380
     tttttctcta tttcccttat atttttatag attaatcaaa acgaatatct cgatatgaat      4440
     ttaatttaat aatagacatt gaagtcatta tgtactaatt agttaatagg tgatctgaac      4500
     gggtttttct gggtttcccc gtatccttgc agcaaatgct ggatcacatt gcactcccag      4560
     aattcacacc agccacatta gaataaggat tactgaatta ttattttaaa aatatatgga      4620
     tgttattttt gagaggggcg                                                  4640
//
ID   Copia-5_DAn-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   AAPP01015573;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DAn_;
KW   Copia-5_DAn-LTR; Copia-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-234
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015573; Positions   36500   36733.
XX
SQ   Sequence 234 BP; 87 A; 32 C; 34 G; 81 T; 0 other;
     tgttggaata cccctattcc acaatcaaaa ataccattta cttttatcat ataagtatat        60
     ttaatttaaa aagaggttgg tcacactgaa gtgtcaactc tatttcttct tgtttgatct       120
     ttgaaaagtg tacatgtggt gtggtgctga gcatttaata taacgaaata ttaaactata       180
     aaaaaagaaa agaactcgtg tgttttaatt caaaaaccaa aggttaaata ttca             234
//
ID   Copia-5_DEl-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-256
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7054-7054 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. Internal region is indeterminate
CC   yet.
XX
SQ   Sequence 256 BP; 67 A; 61 C; 37 G; 89 T; 2 other;
     tgttcaaact tgatgtcacc tcagttctgt tcaaagtaac aatcaggcaa ctctatcttt        60
     aagaacatct ggccactacg tttttgtttt caccacatct ttgtattctc attcttatgt       120
     acactctgtc attccttcac tttaagttac cggtgcaaga agacgccgaa gagtatawta       180
     aacktattat aaccacaacg cattcttggg cttatttctg gtcacctgca tctgttttgt       240
     tggtcaaatc ccaaca                                                       256
//
ID   Copia-5_DMo-I repbase;    DNA;    INV; 4062 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4062
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (17-AUG-2020).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4023
FT                 /product="Copia-5_DMo-I_1p"
FT                 /translation="MSSMFAIEKLDSENYSSWSVQMKSLLIHSDLWSVTCG
FT                 RLXKNENDTVEQKASFDSKDEKALASILLSVKASEINYIKHCGTAREAWTK
FT                 LSEVYMPSGPARKVQLFKQLLYMKMSATDSVREHLANFSNVVEKLREIQVQ
FT                 VADEMLVIILLASLHEGLDNFVVAIETRDALPTFNALKIKLMEEGERRNVG
FT                 DEGEKSENTIFSSRPTNGKRNKTKKDPKDMKCWLCGQNGHFAAKCXLKEKK
FT                 GVKHNESEKAIEKSGKKAFSVFSFSRKIQLTKTVWCVDSGATAHLCADKSM
FT                 FIHMREHKEKIKLAGDNYIETECCGTVLLKWRNNTIELRDVLYARDLQCNF
FT                 ISVSKATEKGLKVIFVKNKVFVKDSNNENWLVAEKHNDLFLFESSMNTVVA
FT                 ANVNANVNQLVKWHDRFGHLNFDSLNKMIKQGMVHGLPASVCNTNDFVCET
FT                 CAKSKICVKRFPKVSENRSKELLALVHTDICGPMRTASQGGARYFATFIDD
FT                 KSRYMSVYMLKNKSDVFEKFKDFKKLAENQTGKRIKAIRSDNGREYLSGTF
FT                 EKFLSSHGIKRQLTVPHTPQQNGVAERANRTLVEMARSMMVHAGVSESFWG
FT                 EAIMTAAYLRNRAETAALIGKTPYEDWYGKKPSVSHLKVFGMEAIVLNKKH
FT                 KNKFSAKGEQHMLVGYSETAKAYRLYNPVKRSVVLSRDVVFLEHKFRTGLE
FT                 HDQGSSRKSDVLILEPDEKVDCEQDEESHDPDEQQQSPTVDGQCQSGDEED
FT                 AEDEQVTGKRGPGRPRIVRTGRTGRPRKEYNVLNVLDARNVVVPTCVRDAF
FT                 QSEQSENWRSAMQKEYDSLKNTETWSLVDLPAGEKAIGCKWVFTTKRDEYG
FT                 NVQRFKARLVAKGCGQQYGVNYMETFSPVARYSSIRLVIALAVEHEMHLHQ
FT                 MDVSAAYLNSELHDDVYMRQPEGFVDATHPKRVLKLKKSLYGLKQSGREWN
FT                 QKLESTLLEIGFVPCASEPCIYTSKIKGYLNIIVVYVDDFILACTREEDVA
FT                 HIKQLISSKFDVVDGGELHYFLGMEIERDGKTGSLSIGHRQYIEDLLKDYG
FT                 MQDCKPSATPLETGFQTKCDDVDCGQVDKTRYQSLIGSLLYLALTTRPDII
FT                 HSVAKLAQRNADPHKEHEVAAKRVLRYLKGTSELRLHYNKTGVPIHCFVDA
FT                 DWAGDSNDRKSFTGWSFYLAGAAVSWESKKQNLVALSSTEAEYVALSTAAK
FT                 EAVYVRKLVDEMGLGPMTKVLIYSDNQSAQCLAKDAKYHSRSKHIEIKYHF
FT                 VREMYKNKVIDIKYIPTDEMKADVLTKNLCKVKHEKFTEMLGLK"
XX
SQ   Sequence 4062 BP; 1296 A; 691 C; 1065 G; 1007 T; 3 other;
     ggttatgggc ccaggcagcg gaaagtgaaa gctgtgctgg tgattgaaaa aatcaaatac        60
     gagactcgat ttattagtta aagcgtgtgc caaactaatg tgtgcaaaat gagttcaatg       120
     tttgcaattg agaaactaga tagtgaaaac tatagttcgt ggtcagtgca gatgaaaagt       180
     ctgttaattc attctgactt gtggtcggtg acatgtggac ggttaktgaa aaatgagaac       240
     gataccgtgg aacagaaagc gtcgtttgat agcaaagatg agaaggctct agctagcatt       300
     ttgttatctg taaaagcgtc ggagataaac tatataaagc actgtggaac cgcgagagaa       360
     gcgtggacaa agttatccga ggtttatatg ccgtcgggac ccgcgcgtaa agtacagttg       420
     ttcaagcaac tgttgtatat gaaaatgtca gctacagaca gtgttcgtga gcatttggct       480
     aatttttcta atgtcgtaga aaagttaaga gaaatacaag tgcaggtggc tgatgaaatg       540
     cttgtaataa tattactagc aagtttacat gaagggttgg acaatttcgt agtcgctatc       600
     gagacacgag acgcattgcc tacatttaac gctctaaaaa tcaaattgat ggaagaagga       660
     gagaggcgca acgtaggcga cgagggtgaa aaaagtgaga atacaatttt ttcgtcgcgt       720
     ccaacaaacg gtaaacgaaa caagacaaag aaagacccga aagacatgaa gtgttggctt       780
     tgcgggcaaa acgggcattt cgcggcgaag tgcagwttaa aagagaaaaa gggtgttaaa       840
     cacaacgaga gcgaaaaagc gatcgaaaag agcggtaaaa aggctttttc ggtgttctct       900
     ttttctagaa aaatccagtt gacaaaaact gtctggtgcg tggacagtgg tgctacagct       960
     catttgtgcg cggacaaatc aatgtttata catatgcgtg agcacaaaga gaaaataaaa      1020
     ctagcaggcg ataattacat agaaaccgag tgttgcggga cagtgttgct taagtggaga      1080
     aataatacga tcgaattgcg cgacgtttta tatgcgagag acttacaatg caactttata      1140
     tctgtgtcaa aggcaactga aaaagggtta aaagtaattt ttgtgaaaaa caaagtgttt      1200
     gttaaagaca gtaacaatga aaactggcta gttgcagaaa aacataatga tttgtttttg      1260
     tttgaaagta gcatgaacac agtagttgca gctaatgtaa atgcaaatgt gaatcaattg      1320
     gtgaaatggc atgatcggtt cgggcatctg aattttgata gcctaaataa aatgatcaaa      1380
     cagggcatgg ttcatggact tccggctagt gtgtgtaata caaatgactt tgtgtgcgaa      1440
     acgtgtgcaa aaagtaagat ttgcgtgaaa aggtttccca aagtgtcaga aaatcgctca      1500
     aaagaattac tagcgttagt tcatacagac atatgtggac ccatgcgtac ggcatcacaa      1560
     ggtggagcgc gctattttgc aacgtttatt gacgataaat cgcgctatat gtcggtgtac      1620
     atgttaaaga ataaaagtga tgtatttgag aaattcaaag actttaagaa gttggctgaa      1680
     aatcagactg gcaaacgcat aaaggctata agaagcgaca acgggcgtga gtacctgagc      1740
     ggtacatttg aaaagttctt atcgagccat ggtataaaaa gacaactaac tgttccccac      1800
     actccacaac aaaatggtgt ggcggagcgc gccaacagaa cactggtgga aatggcgcga      1860
     agtatgatgg tgcatgctgg agttagtgaa tctttttggg gcgaggcgat aatgacggct      1920
     gcgtatcttc gcaatagggc tgaaactgca gctttgattg gcaaaactcc atatgaggat      1980
     tggtatggga aaaaaccgag cgtatcccat ttaaaagtat ttggtatgga ggctattgta      2040
     ttaaataaaa agcataaaaa caagttttca gcaaaaggcg agcagcatat gctggtaggt      2100
     tattctgaga ctgccaaagc ttatcgtctg tacaaccctg tcaaaagaag cgttgtgtta      2160
     tcccgagacg ttgtgttttt agagcacaag ttcaggacgg gattggagca cgatcaagga      2220
     tcatcacgta agtcagatgt gctaatcctt gagccagatg aaaaagttga ttgcgagcaa      2280
     gatgaagaaa gtcacgatcc tgatgagcag cagcaaagtc caacagttga tgggcagtgt      2340
     caaagtggtg acgaagaaga tgctgaggat gagcaggtga caggtaaaag aggtccaggg      2400
     agaccacgaa ttgttcgcac tgggcgtaca ggtcgtccac gaaaagagta caatgttctg      2460
     aatgtactgg atgctcgaaa tgttgttgtt cccacatgtg ttagggatgc atttcagtca      2520
     gagcaatctg aaaactggag atcggcgatg cagaaggagt atgatagcct gaagaacact      2580
     gagacatgga gtctggtcga tcttccagca ggcgaaaagg ctattggttg taaatgggtt      2640
     tttaccacca agcgtgatga gtatggcaac gttcagcgat ttaaagctag attggtcgca      2700
     aaagggtgcg gacagcaata cggagttaac tacatggaaa cgttctctcc agtggcacgt      2760
     tactcctcaa tcagattggt gattgcgttg gctgtcgagc acgagatgca tctgcatcag      2820
     atggatgttt ctgcagcata cctgaacagc gagctacacg atgacgtgta tatgcgacaa      2880
     ccagagggct ttgtcgacgc tactcatccc aagcgcgtac tgaagctgaa gaagtcgttg      2940
     tacggcttga aacagagcgg tcgggagtgg aaccaaaagc tggagagcac tctattggag      3000
     attggtttcg tcccatgtgc aagtgaaccg tgcatttata caagcaagat caaagggtat      3060
     ttgaatatta ttgttgtata tgttgacgat tttatacttg catgtaccag agaagaagat      3120
     gtggcccaca ttaagcagct catatcaagc aaattcgacg tggtcgatgg tggtgagcta      3180
     cactactttc tggggatgga gattgagcga gatggcaaga ctggtagtct ctccataggc      3240
     cataggcagt acattgaaga tctgctgaag gattacggca tgcaagactg caagccaagc      3300
     gcgactccgt tggaaactgg gttccagacg aagtgcgatg atgttgactg cggccaggtg      3360
     gataaaacac gctatcaatc gctcattggt tcgttattgt atttggcgtt gactacacgg      3420
     ccagatataa tacactctgt ggctaagctg gcgcagagaa atgcagatcc gcacaaggag      3480
     catgaggtkg ctgccaagcg ggtgttgaga tatctaaaag gtacctcaga gttgagacta      3540
     cactataaca aaacgggtgt gcctatacac tgttttgttg atgcggactg ggctggcgac      3600
     agtaacgatc ggaagtcgtt tacgggttgg tcattctacc ttgctggagc agcagtctct      3660
     tgggagtcca agaagcagaa tttggtcgcc ctcagtagca cagaggccga gtacgtggca      3720
     ctttctacag cagccaagga ggcggtatac gttagaaaac tggtcgacga aatgggactc      3780
     gggccgatga caaaggttct gatttacagt gataatcaga gcgcacaatg ccttgctaaa      3840
     gatgcaaaat atcattcacg tagcaagcat attgaaataa aataccattt tgtaagggaa      3900
     atgtacaaaa ataaagttat tgatataaag tacattccca cagatgaaat gaaagcagat      3960
     gtattgacga agaatttatg taaagtcaaa catgagaagt ttactgaaat gttaggttta      4020
     aaatgaaaca tttttgtaaa tagacatcgc gttgagaagg ag                         4062
//
ID   Copia-5_DMo-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   17-AUG-2020 (Rel. 25.09, Created)
DT   17-AUG-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-184
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (17-AUG-2020).
XX
DR   [1] (Consensus)
XX
CC   consensus.
XX
SQ   Sequence 184 BP; 44 A; 31 C; 31 G; 78 T; 0 other;
     tgttaaaatt atgtatgtaa gcaccgctgt gtctatttct ttgtctaaca ttattctcat        60
     gttaagttct gttaattgta acggagattc tttcgtgtat gctttaagtt cattttcggc       120
     tgcctgcgct gcagcatata ttcatttgta tgttttagtc tctaataaac ctctgaatcg       180
     aata                                                                    184
//
ID   Copia-5_DTa-I repbase;    DNA;    INV; 4046 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4046
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (22-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, paired flanking LTRs are ~98% identical to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4016
FT                 /product="Copia-5_DTa-I_1p"
FT                 /translation="MSSLYNIEKLDDTNYDTWCVLMRSVLVHQDLWATVSG
FT                 TQIKPEDESSAEYPWWKVQNDKAMAVLFLSISASQICGVKKCNSAKEIWDS
FT                 LKQIHQPSGPVRKVTLFKMLLHKRMQEGDLVQQHVTEFSNIVEKLSEVGIS
FT                 LNEELFVIMLLASLPPSYENFVVALEARDDLPSFTVIKTKLMEEAERRKSN
FT                 DRNESAQAFAVRSAAKRKGDGDQNRDRTNNGSGKYSRNNVKCWKCGKRGHF
FT                 AAQCRIRSETETTSESEPRENKRSFENRAFAGIATRQSISVGAWCVDSGAT
FT                 AHMCARRDLFDLFEKCNQKVELAGSEHLYAKGRGTVVIKSNLGFKITLHSV
FT                 LYIPELQCNFISVSKAVASGCAVSFSKEHASFIQNGVILKAKNICGLYLCE
FT                 LQTNEMLCFSRGDELMKWHERYGHLNMQSLRDLHSKSMVRGLTLDSTNVAD
FT                 FKCITCMKNKCHVKPFQKSETKSKEILEILHSDVCGPMNKASKGGSKYFLT
FT                 MIDDKSRYVHVYFLKQKSEVLSVFMKHVTMVERQTGLKVKTLRSDNGTEYS
FT                 NKEFDAYLERMGIQRQLTVPYTPQQNGVAERYNRTLLDMARAMLNSAGMDE
FT                 SFWAESVACASYLKNRSPTKALQGVTPYEVWTTHKPLVKHFRIFGSIAIAL
FT                 DKTQKKKFQERGKEYVMVGYSETSKAYRLYDKQLGEFKVSRDVIIEKCVQK
FT                 NDISLESVLNESNLIKGAEDIAGEEAEDIAEEEPVKDLDENQETQQAEEEK
FT                 VVCEVETNKPENIGPGRPKLIRTGKKGRPRKQYNVINMMRDSEIQIPETVH
FT                 DAMGSAQADHWMSAMQEEYDALVRNHTWQKVKLPAGERLIGCKWVFTLKRN
FT                 QAGEIERYKARLVAKGCSQKFGIDYQETYSPVVRFSTIRMVLAMAVEHELH
FT                 VHQLDVSTAYLNGNLEEEVYMRQPDQFEDGSNNVLKLQKSLYGLKQAGRVW
FT                 NTELNNVLNKMGYKACVSEPCLYVKTTDEKSINVIAVYVDDLLLASSNLGE
FT                 VVKSKREISSYFQVVDKGPVSDFLGLEIERDGDTGAILMGQRKHIKSLLKE
FT                 FGMSECRTVSTPLEPNFQVDCVSERCRRVDVKEYQSIIGSLMYIALSSRPD
FT                 ILHSVCKMSQRNVNPHSEHLSAVKHILRYLQATVDLRIRYVKTEMDICGYS
FT                 DADWASDASDRRSYTGYTFMWGGSAFSWASKKQKSIALSSTEAEYVAMSET
FT                 TKEAIYISKLINEMKLFFGLQPVLIHGDNLSAINLVKNPVFHARSKHIDIK
FT                 YHHIRKCYEEELIDLKYCPTNEMVADILTKNLQKINHMKCTRLLGLQ"
XX
SQ   Sequence 4046 BP; 1321 A; 738 C; 1023 G; 964 T; 0 other;
     ggttatgggc ccaggacgtc gactcaagtc cagaaaacaa ttcatttaca gctgcaggaa        60
     ttcagtggat tcttcgtgaa acaaaagtta aaatgagttc gttgtataat attgaaaagc       120
     tcgatgatac caactatgac acctggtgtg tgcttatgcg gagcgttttg gttcatcaag       180
     acttgtgggc aactgtttct ggcacccaga taaaaccaga ggacgaaagt agtgctgaat       240
     acccttggtg gaaagtccaa aatgataaag cgatggcagt gctattttta tccatcagtg       300
     cttcacaaat ttgcggtgtg aaaaaatgta acagcgcaaa ggaaatatgg gatagtctaa       360
     aacagattca tcagccatca ggcccagttc gcaaggtgac gttgttcaaa atgttgctac       420
     acaagcgcat gcaagaggga gaccttgttc agcaacatgt tacagaattt tcaaatatcg       480
     tcgaaaaact ctcagaagtt gggatttctc tgaacgagga gttatttgtc attatgttgt       540
     tggcaagtct tccaccgtca tatgaaaatt ttgttgttgc gttggaagcc cgagatgatt       600
     taccatcgtt caccgttata aaaaccaaac taatggaaga ggcggaaagg cgaaagagta       660
     atgacagaaa tgaaagtgcg caggcgtttg cagttagatc tgctgcgaag aggaaaggcg       720
     acggcgacca aaatcgagac agaacgaata acggatctgg aaagtacagc cggaataatg       780
     taaagtgctg gaaatgcggg aagagaggac actttgccgc tcaatgtcgc attcgcagcg       840
     aaaccgaaac aacgagcgaa tccgagccaa gagagaacaa gagaagcttc gaaaatcgag       900
     cttttgcggg aatagctacg agacagagta ttagtgttgg tgcgtggtgt gtggacagcg       960
     gggcgacagc tcacatgtgt gctcgtcgcg atctctttga tttgttcgag aaatgcaatc      1020
     aaaaggttga acttgctgga agtgaacacc tgtacgcaaa aggccgtgga actgtggtca      1080
     taaaaagtaa tttaggcttt aaaattaccc tacacagcgt attgtatatc ccagaactac      1140
     agtgcaactt tatttctgtg tcaaaagcag tagcaagcgg gtgcgcagta agttttagca      1200
     aagaacatgc cagctttatt cagaacggtg tgattctaaa ggcaaagaat atttgtggtc      1260
     tgtatttgtg cgagctgcaa actaatgaga tgttatgttt cagtagagga gacgagctga      1320
     tgaaatggca tgagcgctac ggacatttaa atatgcaaag tttgcgggac ctgcacagca      1380
     aatcgatggt gcggggatta actttggact ctaccaacgt agcagatttt aaatgcataa      1440
     cgtgcatgaa aaacaagtgc catgtgaagc cattccagaa atcggaaacc aaatctaaag      1500
     agatattgga gattttgcac agtgacgtat gcgggcctat gaacaaagct tcaaaaggtg      1560
     ggagcaaata ttttctcact atgatagatg acaaaagtcg atatgtgcac gtgtacttct      1620
     taaaacagaa gtctgaggtg ttgagtgtgt ttatgaaaca tgttaccatg gtggagcgac      1680
     aaactggtct aaaagtaaaa accctcagga gtgataatgg cacagaatac tcaaacaagg      1740
     agtttgacgc ttacttggaa aggatgggca tccaacgaca gctgaccgtt ccgtatacgc      1800
     cccagcaaaa tggggtggct gaaaggtaca acagaacctt gctggacatg gcacgtgcaa      1860
     tgctcaacag cgctgggatg gatgagtctt tttgggcaga gtcagtagcc tgtgcatcgt      1920
     acctgaaaaa taggtcgcca acaaaagcgt tacaaggagt tactccttat gaagtatgga      1980
     caactcacaa accgttagta aagcatttca ggatctttgg atcgattgcg attgccttag      2040
     acaagaccca aaagaagaag ttccaggaga gaggcaagga gtacgtgatg gtcggatact      2100
     cggagacttc aaaggcgtat cggttatacg acaagcagct aggtgaattc aaggtcagca      2160
     gagatgtgat tatcgaaaaa tgtgtccaga aaaacgatat tagcctagag tcagtgctca      2220
     acgaaagtaa cctcataaaa ggagctgaag atattgccgg agaagaagct gaagacatag      2280
     ccgaagaaga acctgtaaaa gaccttgatg aaaaccagga gacgcagcag gcggaagaag      2340
     aaaaggttgt ttgtgaagtt gagaccaaca aaccggaaaa cattggacca ggaaggccaa      2400
     agctgatacg tacgggaaag aaagggcgcc cacgtaagca gtacaacgta atcaacatga      2460
     tgcgggacag cgaaatacag attccggaga cggttcatga cgccatgggg agcgcacaag      2520
     cagatcattg gatgtcagca atgcaggaag agtatgatgc acttgtaaga aatcatactt      2580
     ggcagaaggt taagcttcca gcaggcgaga ggctaatagg gtgcaaatgg gtgttcaccc      2640
     tgaagaggaa tcaagcaggc gaaatcgagc gctacaaggc gaggttggta gcaaaaggat      2700
     gcagccaaaa gtttggaatt gattaccagg aaacttattc tcctgtcgtt cgtttttcaa      2760
     cgatacgaat ggtattggct atggcggtcg aacacgagct acatgtgcat caactggacg      2820
     tgtcaacagc ctacttaaac ggtaacctgg aggaagaagt atacatgagg caaccagatc      2880
     agtttgagga tgggtcaaat aacgttctaa agctacagaa atccttgtac ggcttaaaac      2940
     aagccggtcg tgtctggaat acagaattaa acaacgttct taataagatg ggctacaagg      3000
     cgtgtgttag cgagccatgc ttatacgtga agaccactga cgagaagagc atcaatgtaa      3060
     tagccgttta cgtcgacgat ctcctgctgg cttcttcaaa ccttggtgag gtggttaaat      3120
     ctaaaaggga aatttcatct tacttccagg tggtcgataa aggtcctgtt tcagactttt      3180
     tgggacttga aatcgagcgc gacggtgata caggggccat actaatgggt caacgaaaac      3240
     acatcaagag ccttctaaag gagtttggca tgagcgaatg tcggactgtg tcaacaccgt      3300
     tggaaccaaa ctttcaagtt gattgcgtca gcgaaaggtg caggcgagtt gacgtgaagg      3360
     aatatcagtc aataataggc tcactgatgt atattgccct gtcatcacgc ccggatattt      3420
     tacactccgt ctgcaaaatg tcgcagagaa atgtcaaccc tcacagtgag catttatcag      3480
     ctgtcaagca tattttacgc tatttacaag caacggttga cctgaggata agatatgtga      3540
     agacggagat ggatatttgt ggctactcag atgccgactg ggctagcgat gcaagcgatc      3600
     gtaggtcata caccggatat acatttatgt ggggtggttc tgccttttca tgggcatcga      3660
     agaagcagaa atctatcgca ttaagcagta cagaagcaga atatgtggcg atgtcggaga      3720
     ctacaaaaga agcaatatat ataagtaaac ttatcaatga aatgaaactg ttttttggtc      3780
     ttcaacctgt attgatacat ggcgacaatt taagcgcaat taatcttgta aagaatccag      3840
     tttttcatgc aagaagcaaa cacatagata ttaagtacca tcacattagg aaatgctatg      3900
     aagaagaact aattgatttg aaatattgtc caacaaatga aatggtagca gatatactta      3960
     caaagaattt gcaaaagata aatcatatga aatgtactag attacttgga ctacaataat      4020
     gtaaagttgc aagtattgaa gaggag                                           4046
//
ID   Copia-5_DTa-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-173
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5698-5698 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 173 BP; 49 A; 40 C; 28 G; 56 T; 0 other;
     tgttgatttg gcaatactag ctaaacatta tatgaacggc aacactgcct aacttatggt        60
     attctctcta cctctcaata aagtcagtcg cttatgaact tcaacacgaa gtggttctca       120
     tttacttggt tttcacgggc tagtgttcca cagaacgatt ttaacctcca aca              173
//
ID   Copia-5_DWil-I repbase;    DNA;    INV; 4673 BP.
XX
AC   scaffold_181074;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DWil_;
KW   Copia-5_DWil-LTR; Copia-5_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4673
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181074; Positions  602793  598121.
XX
CC   Positions [1626-1895] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1641..3572
FT                 /product="Copia-5_DWil-I_1p"
FT                 /translation="MREFCVKNGISYHLTVPHTPQLNGVSERMIRTITEKA
FT                 RTIVNGAKLNKSFWGEAALTATYLINRIPSRALGENKMTPYEMWHNRKPNL
FT                 KSLKVFGSTVYVHNKVKKGKFDEKSFKAILVGYEPNGYKLWDVVKEKFFVA
FT                 RDVVVDETNMVYSRASKPEEEVPNESRERNYEELLYESKECNHLNIRNDST
FT                 ECVRTKFLNESKECDHLNIRNDSTECVRSELLYDSKECDELNFSNENKKRK
FT                 HTDFLNENKEIYIPNESTDCEKDDQSKDGVQKNTDTKITQRKSERLNAKPK
FT                 ISYSEDDESLNKYILNAHIFFDEIPSSFDEIKFRDDKSAWEDAIKTELKAH
FT                 EINNTWTLTKMPENKNIVGSRWVFSIKHNELGIPIKYKARLVARGLTQKYQ
FT                 VDYEETFAPVARIASFRCIMELAVQYDLIVHQMDVKTAFLNGVLNEEIYMQ
FT                 PPQGISCDAGNACKLNKAIYGLKQAARCWFQVFEQALKECSFVNSPVDRCI
FT                 YILDKGDVNDKIYVLLYVDDVVIATRDLERMNNFKIFLSTKFKMTYLNEIR
FT                 HFIGIRIKMDQDIIYLSQAAYIKKILNKLNMDNCKSVSTPLPSKLNYDLLN
FT                 SDEDCKAPCRNLIGCLMYIMLCTRPDLPTAVNILSRYSSKNNSELW"
XX
SQ   Sequence 4673 BP; 1759 A; 665 C; 847 G; 1402 T; 0 other;
     acaggttatg ggcccagtcc atgcctattt ttgaagaagt tttattattt caatatattg        60
     tgaaattcca actgtgcact taaaaatttt ctttctcttt ctttttcgtg atatttgtcc       120
     gtaaagaaat ggaaaagaat aagtacaatt aaaccgttcg atggagaaaa atatggtgtg       180
     tggaagttta gaattaggga gttgtttgcc gaattagacg ttctcaaagt tgttgatgag       240
     ctaatgccaa atgaagtgga cgaaacttgg aataaggcag aaagaagtgc aaaaagcata       300
     ttagttcaac atttgagtga ctctttttta cacttcgcgg cagacaatat ttccgcacgt       360
     ggtcttatgc aaaaattaga tgccatatat gaactctttc cagtcatttc gttaaatttg       420
     atgatattgt cagtgagata ttagcggcgg gtggcaagtt agccgaaatg gaaagagtta       480
     tgtacttgct gcatacgttg ccttctactt acgatggtgt gattacagca atagaaacat       540
     tgtccgatga aacactttca cttacctttg taaaaaataa attattagac tatgaaacta       600
     aactaagaag tgatagcaat gacactagca aaaaggtcat gaaggcagtt gttaaatata       660
     atcacaattc caatataaat cacgtgttta aaaatagagg cacaatacaa aagaaaaggg       720
     tatttaaagg aaagcaaaaa ttcaacatta aatgccacca ttgtggtaga ctagggcaca       780
     taaaaaagga ttgttttcat tttttaaaag aaattaaaaa taaagaaaat aaaactaata       840
     aagaaaacaa taacaataac aataaacaag ttcagttgca acatccacaa ataaccacgg       900
     ttttgctttt atgataaaaa atttaaacca agttgataaa ccaaaacaac ttggttttat       960
     tattgattcg ggtgcaactg atcacctaat caatgatgaa tcgctgttta atgattgcgt      1020
     ggaattggag caaccaataa aaattgctgt ggcgaaggaa ggccaataca tattcgctac      1080
     aaaatgtgga atcgttcgat tatacaatgg ccacaacatc accttggagg atgttttata      1140
     ctgcaaggag gcagcagaaa acttgatgtc agtgaagcgt ctgcaagaag ccggaatgtc      1200
     aatccatttt gaccaagacg gtgtgtcaat taagaaaaat ggcatcactg ttgttgaaag      1260
     ttcgggtaag ttcaacaaca tacaaatact aaaattccaa gcatacagta taaatgcggg      1320
     aaataataat tatcgattat ggcatgagag attaggtcat gttagcaaag caaaactatt      1380
     ggaaataaag aataataatt tgtttattga tagcagtctt ctaaataatt taaaaatttc      1440
     ggtttgtttg ttgtccattc agacgtttgc ggcccaatta caccaacaac aatagacgat      1500
     aaaaattact ttgtgatttt tgtagaaagt ctgacgtttt caatgctttc aaagattttg      1560
     ctgcaaaaag tcacgctcac tttaatctta aaattgttaa cttgtatatt gacaacggta      1620
     gataatacct gtcaaatgaa atgcgtgagt tttgtgttaa aaatggaata agctatcatt      1680
     taaccgtgcc acatacacct cagttgaatg gtgtctcgga aagaatgatt agaaccatta      1740
     cagaaaaagc tcgcaccata gtaaatggag caaaattaaa caaaagtttt tggggtgaag      1800
     ctgcactcac tgcaacatat ttaataaaca gaattccaag cagagcactt ggtgaaaata      1860
     aaatgacccc atatgaaatg tggcacaata ggaagccaaa tttaaaatct ttaaaagtat      1920
     ttgggtcaac tgtctatgta cataataaag taaagaaagg caaatttgat gagaaatcat      1980
     ttaaagccat tcttgtaggg tatgaaccaa atggctataa attatgggat gtcgtgaaag      2040
     aaaaattttt tgttgctagg gacgttgttg tcgatgagac aaatatggtt tattctagag      2100
     catctaagcc tgaagaagaa gtcccgaatg agagtaggga aagaaactat gaagaactct      2160
     tatacgaaag taaggaatgt aatcatctga atatccggaa cgatagtacg gagtgtgtta      2220
     gaacaaaatt cctgaatgaa agtaaggaat gtgatcatct aaatatccgg aacgatagta      2280
     cggaatgcgt tagatcagaa ctcctatacg acagtaagga atgtgatgag cttaattttt      2340
     cgaatgaaaa taaaaaaagg aaacatactg atttcttgaa tgaaaataaa gaaatatata      2400
     tcccgaatga gagtacggat tgtgagaaag atgatcaatc aaaagatggc gtgcaaaaga      2460
     atactgatac taaaataacg caaagaaaaa gtgaaagact taacgccaaa ccaaaaatat      2520
     cttatagtga agatgatgag agtttgaaca aatatatttt aaatgcccat atatttttcg      2580
     atgaaattcc aagctcattt gatgagataa aatttagaga tgataaatct gcttgggagg      2640
     atgcaataaa gacggagtta aaggcccatg aaattaataa cacttggaca cttacaaaaa      2700
     tgccagaaaa caagaatatc gttggtagta gatgggtatt ttctattaaa cataatgaat      2760
     taggaatacc aataaaatat aaagctagac tagttgcaag aggacttact caaaaatatc      2820
     aagttgatta tgaggagact tttgcacctg ttgctagaat tgctagtttt agatgcataa      2880
     tggaactagc agttcaatat gatttaatag tgcatcagat ggatgttaaa acagcattcc      2940
     ttaatggtgt tttaaatgaa gaaatatata tgcagcctcc tcaaggtata tcatgcgatg      3000
     ctggaaatgc ttgtaagtta aataaagcga tttacggcct taaacaagca gctcgatgct      3060
     ggtttcaagt gtttgagcaa gcattaaaag aatgtagttt tgtaaactct ccagtagatc      3120
     gctgcattta tatcctggac aaaggtgacg taaatgataa aatatatgta ttattatatg      3180
     ttgatgacgt agtaatagca acaagagact tagaaagaat gaataatttt aaaatttttt      3240
     taagtacaaa attcaaaatg acttatttga atgagatacg tcattttatt ggaataagga      3300
     taaaaatgga tcaagatata atatatttga gtcaagctgc atatataaag aaaattttaa      3360
     ataaattgaa catggacaac tgtaaatcag ttagtacccc tttgccaagt aaacttaatt      3420
     acgacctgct taactcagat gaggattgca aagccccatg tcgtaatctt attggatgtc      3480
     taatgtacat aatgctttgt acgcgtccag atttacctac agctgttaat atcctgagta      3540
     gatatagtag taaaaataat tcagaattat ggtagtgttt gaaaagagtt attagacatt      3600
     gacatgaaac ttcattataa gaaaaataca tcatttgaaa acacactagt tgtatttgta      3660
     gactcagatt ggggtggaaa tgaacttgat aggaaaagta caacgggcta tttatttaaa      3720
     atgtttgatt ccaatctaat ttaataatct aatacaaaaa aacagaactc agtagcagcc      3780
     tcgtcaactg aagctgagta catggctctt tttgaagccg taagagaggc tctatggttg      3840
     aaatctcttc ttagtagtgt aaacatataa ctcaaaaggc ccattcaaat ttatgaagat      3900
     aaccaaggct gtattagtat agcaaataat cccttatgtc ataaaagagc caaacatatt      3960
     gatataaaat atcatttctc tagagaacag ataaagaata acgaaatttg tattgagtat      4020
     atatcgacag ataatcaact ggcggacatc tttactaagc ctctacctgc tggacgattt      4080
     gcagaattac gagatatgtt gggactacac atcgactaga atcaacaatt aatcttttta      4140
     tgaattgcta aagaaatcta atttgactta atgttacttt aaaaaaaaaa cgcatactga      4200
     attgctggat taataccaaa tttttgattt gacttaatgt aatttttaag aaacaaactg      4260
     aattgttgaa tttaaaccaa atctaatttg acttaatgtt acttttaaaa aaaaaaaaaa      4320
     cgcatactga attgctggat taataccaaa tttttgattt gacttaatgt aatttttaag      4380
     aaacaaactg aattgttgaa tttaaaccaa atccaatttg acttaatgtt actttaaaaa      4440
     cgcatactga attgctaaaa tggatactca tacactaaat ttatgttata accctatatt      4500
     ttatgtatat tacaatgatc tgatcaggtt ttctctgggt ttccctgtat ccttgcagca      4560
     aatgctggat cattcaatat tccccagaat gcacaccaac cacgtcagaa taagaattca      4620
     atatttttat atttgtaaac ttaatgataa tgttattttt gaggggtgcc tat             4673
//
ID   Copia-5_DWil-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   scaffold_181074;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_DWil_;
KW   Copia-5_DWil-I; Copia-5_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-250
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181074; Positions  598120  597871.
XX
SQ   Sequence 250 BP; 93 A; 38 C; 33 G; 86 T; 0 other;
     tggaataccc ctatttcaat aataacatta tgcaacactt ctaacgtggt gatttaacat        60
     agagattatt tatcaagtaa ctacatctgg tcccactaaa tcttttcttt tttggtgaaa       120
     accgtttttg tgtaaacaag tggtgtggtg ttgcaacgaa aatataatca aagaaaataa       180
     aagacatcat aatataaaac ataaaataaa ctacagtatt ctttattgaa tagctttatc       240
     tagttttcca                                                              250
//
ID   Copia-5_LH-I repbase;    DNA;    INV; 4166 BP.
XX
AC   ADOQ01001135;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_LH_;
KW   Copia-5_LH-LTR; Copia-5_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4166
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001135; Positions   15018   19183.
XX
CC   Positions [1550-2047] - Integrase core
CC   'CTAGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..1170
FT                 /product="Copia-5_LH-I_1p"
FT                 /translation="MERNALPAVPLLTGSNYLVWAIKMEAILSLKKLDIII
FT                 KEEKPVEDAEQRTRIEWETKNKEAVAYIRLHLSDEQALQFATENEAKILWL
FT                 KIKNAYAGAAEDQKIDASNDLKFLHMEDKETITNYIARARGLSMKCASLGL
FT                 NVTPRELAYYTVRGINNQYKDIREILKTQREKSLEEIHEILKEREKESQRR
FT                 GSHLRETEGAYAIQKKNDKKCYICGKSGHIAKVCWHRKNYKEDHHRATNNN
FT                 NRRDGKKDPDTSRGNAEKKKSANSIVKPVDGNDKKYAFTIYNSELESNINE
FT                 NWLFDSGATNHMANNLKWFSNIDFQVGELCQAGAGSRLRYEGIGTVEIETR
FT                 DENNEKNYHSNKRCLVCTVT"
FT   CDS           1202..4126
FT                 /product="Copia-5_LH-I_2p"
FT                 /translation="MKKGFKVIQQNDIIVIIDKEGNAVLTGELINKRLKFL
FT                 AKPCNVENQKVSYSIGKPSDIDHKIWHKRLVHINDQYLFKMNNDNLVDGMY
FT                 IALGDDFVCESCNLSKITRKSHKVVTIDQSKQPLELIHGDLCGPISTESLN
FT                 GSRYMLVLIDDFSGMYFTYFLKHKNDVHEKFVSFKEKYENLLGVRVKRFRT
FT                 DNGREFVNRELDEFLEKNGIIHEKTVPYNPESNGKAERANRTILERAKTLL
FT                 YDSKLPNIFWAEAAACASHVTNVTFRKNKNKTPFELFFGMKPNINYLRVFG
FT                 CIAYYHVPKQKRDKLNLPGKIGIMVGYARERRGYRVYVPETGEVLEERSVN
FT                 FNENDSGAKLIDKNNKDNNEYHLLTYLEPEESVIKDQDDNEIHADVDSETD
FT                 DEENEEIMEAERRPRGRPPGTTRAVMEAREYLRRNENDENQANVRRSERLR
FT                 EKAASLVEQVKTPSSYNEAKISQNWPDWERAMRDELKSFDKHSVWDIVDKP
FT                 YKGKITKSKWVLTVKNAKENGGVKFKARLVAAGYNHVKNKDYEESYSPVVS
FT                 IDAWRLTIALASKLKLNLRLFDVKTAYLYGDLSETVYLSLSSGFEEEYGKD
FT                 KVFKLKKSIYGLPQSGRNWYLKFKNVLIQLGFRSMSSENSIFVLQSQKAFV
FT                 AISIYVDDFSIIDNNSKYCNNILFKLKQTFEINETTDNNIFLNIKIEKFEN
FT                 GIALSQTEYITKLLRKYNLDECKSVNTPIVPGEDKVFERTDDVIDIDSYKE
FT                 IIGELLYLANRTRPDIAFVTSYLSQFNNRPEKRHIMLTKRVLRYLQGTREK
FT                 RLFYTNEVGTLRAYADSSWGNGENGKSFSGGIVMLGDSLILWKSNKQKCVG
FT                 LSTCVVELFACSDIVKDVKWLSNLLVEMELETFLNKPVVVYCDNTAAIEWM
FT                 RSVRSSNKTRHVNLKFHFVRDEIERGDIGVKYVETKYMTADFLTKAVTHEK
FT                 LLWMLEKTSVIDLNTIKAKK"
XX
SQ   Sequence 4166 BP; 1581 A; 625 C; 890 G; 1070 T; 0 other;
     atctggtagc agagcgtggt tacaatccac ggaagaagaa agtgatacat actctaaaga        60
     ttattaaccg ttacatttaa catggagaga aacgcattgc cagcagtgcc gttattaaca       120
     ggatccaatt atctagtttg ggcaataaaa atggaagcta ttctaagctt aaagaagctg       180
     gatataataa taaaagaaga aaaaccagta gaagacgccg aacagagaac gaggatcgaa       240
     tgggaaacaa agaataaaga agcagtggca tatatacgct tacatttatc ggacgaacaa       300
     gcactgcaat tcgcaaccga aaatgaagcg aagatattgt ggctaaaaat taagaatgcc       360
     tacgcaggag cggcagagga ccagaagatc gacgcgagca acgacttgaa atttctccat       420
     atggaagata aggaaactat aaccaattat attgcacgtg cacgcggttt atctatgaaa       480
     tgtgcatcgt taggcttaaa tgtgacgcca cgagagttag catattacac agtacgtgga       540
     ataaacaacc aatacaaaga tatccgcgaa atattaaaaa cgcaacggga aaaatctcta       600
     gaagaaattc acgagatact aaaggaacgt gagaaagaat cacaacgccg cggaagccat       660
     cttagagaaa cggaaggtgc ctacgccatc caaaagaaga acgacaagaa atgttatatc       720
     tgtggtaaaa gcggccatat tgcaaaggta tgttggcacc gtaaaaatta caaagaggat       780
     catcacagag ctaccaataa caacaacaga cgagacggaa agaaggaccc ggatacgagc       840
     agagggaatg cagaaaagaa gaaatccgct aatagtatag taaaacccgt agacggtaac       900
     gataaaaaat acgcatttac aatttataat tctgagttag aaagtaatat taatgaaaac       960
     tggttatttg acagcggtgc gaccaatcat atggcgaata atcttaaatg gttctcaaat      1020
     atcgattttc aggttggtga actctgtcag gcgggagctg gatcaagatt gcgttacgaa      1080
     gggataggta ctgtcgaaat tgagacgaga gatgaaaata atgaaaaaaa ttaccatagt      1140
     aataagcgat gtcttgtatg taccgtaact tagggaaaat ttattgtcta caacgacgct      1200
     catgaagaaa ggatttaagg taatacaaca aaatgatata attgtcataa tagacaagga      1260
     aggtaacgca gtcttgaccg gtgagttaat taataaacgt ttaaagtttc tggctaagcc      1320
     ttgtaatgtc gaaaatcaaa aagtttctta cagtattgga aaaccgtctg acattgatca      1380
     caagatatgg cataaacgac tagtacatat aaacgatcaa tatctgttta aaatgaataa      1440
     tgataatctt gtagatggca tgtacatagc tcttggtgat gatttcgtct gtgaaagttg      1500
     caatctcagt aaaataacta gaaagtcgca caaagtagtg acaatagatc aaagtaaaca      1560
     gccgcttgag ctaattcatg gcgatctctg tggaccaata tcgactgaat ccttgaatgg      1620
     ttctcgatat atgcttgtat taatagatga tttctctgga atgtatttca cgtatttttt      1680
     gaagcacaaa aatgacgtcc acgagaagtt tgtttcattt aaagaaaaat acgaaaatct      1740
     acttggtgtt agagtaaaac gctttagaac agacaatggt cgagaatttg taaatcgaga      1800
     acttgacgaa tttttagaaa aaaacggaat aattcacgag aaaaccgtac cgtataatcc      1860
     tgaaagcaat ggcaaggccg aaagagccaa tcgaacaatc ctagaacgtg ctaaaactct      1920
     cttatatgat tctaaattac caaatatatt ttgggcagaa gccgcagcgt gcgctagtca      1980
     cgtcactaac gtaacttttc gtaagaataa aaataaaacg ccattcgaat tatttttcgg      2040
     aatgaagcca aatatcaatt atcttcgtgt attcggatgt atagcatatt atcatgtgcc      2100
     taagcagaag cgcgataaat tgaacttgcc cggtaaaata ggaataatgg taggttatgc      2160
     gcgagaaaga cgcggttata gagtttacgt accagagact ggtgaggttt tagaagaaag      2220
     atccgtaaat ttcaatgaaa atgattcagg tgcaaaactt atcgataaaa ataacaagga      2280
     caataatgaa taccatttat taacatattt agaaccagag gaaagcgtaa ttaaggatca      2340
     ggatgataac gaaatacacg cggatgttga tagtgaaaca gatgacgaag aaaatgagga      2400
     aatcatggaa gcagaacgta gaccccgcgg aagacctcca ggtacgactc gagcggttat      2460
     ggaggcgaga gaatatttac ggcgtaatga aaatgatgag aatcaagcaa atgttcgaag      2520
     atctgaaaga ttgcgagaaa aagcagccag tttagtagag caagttaaga cgccatctag      2580
     ttataatgag gcaaaaatta gtcaaaactg gccagattgg gaaagggcca tgagagatga      2640
     gttaaaatca tttgataagc actcggtatg ggatatagta gacaaaccct ataaaggaaa      2700
     aattacgaag agtaaatggg ttctaactgt taagaatgct aaagagaatg gaggtgtcaa      2760
     attcaaagcc aggttagtag cggcaggata caatcatgtt aaaaataaag attatgagga      2820
     atcttactca cctgtagtat ccatagacgc atggcgtctg actatagcat tagctagtaa      2880
     actaaaacta aacctgcgac tctttgatgt caaaacggca tatctatacg gtgatttatc      2940
     ggaaacggtc tatttgtcat tgtcttcagg atttgaagaa gaatacggaa aggataaagt      3000
     tttcaaactt aaaaagagta tatatggcct ccctcaatcg gggcgtaatt ggtatttaaa      3060
     attcaaaaat gttctaatcc aactaggttt cagatcgatg tcctcggaga acagcatatt      3120
     tgtattgcaa agtcaaaagg cgttcgttgc tatttcaatt tatgttgatg atttctcgat      3180
     tatagataac aattctaaat attgtaataa tatattgttc aaactgaaac aaacttttga      3240
     aatcaacgag actactgata ataacatctt tctaaacatt aaaatagaga aatttgaaaa      3300
     tggtatcgcc ttatcacaga cggaatatat cacaaagtta ttaagaaaat acaatttaga      3360
     tgaatgcaaa tcggtaaaca ctccgatcgt cccaggagaa gacaaagtat ttgaacgaac      3420
     agacgacgta atagatatag attcttataa agaaataatt ggtgaattat tgtacttagc      3480
     aaatcggacg agaccagaca tcgcgtttgt gacatcgtat ttgtcacaat ttaataacag      3540
     acctgaaaaa cgacatatta tgttgactaa acgcgtgtta cggtatttac aaggtactcg      3600
     agagaaaaga ttgttttata ctaatgaagt aggaacctta agagcatatg cagattctag      3660
     ttggggaaat ggcgaaaatg gaaaatcgtt ctcaggagga attgttatgc taggagattc      3720
     tctaatattg tggaaaagca ataagcaaaa atgtgtagga ttatctacct gcgtagtaga      3780
     attatttgcg tgttcagata tagtaaaaga tgtgaaatgg ttgtcgaatt tattagtaga      3840
     aatggaacta gaaacgttct tgaataaacc tgttgtggtg tattgtgata acacggcggc      3900
     aatagaatgg atgaggagcg tgcgttcatc aaataagacg cgtcatgtaa atctaaaatt      3960
     tcattttgtt agagatgaaa tagagagggg agatataggt gttaagtatg ttgaaacaaa      4020
     atatatgact gcggattttc taactaaggc ggtaacgcat gaaaaattat tatggatgtt      4080
     agagaagact agtgtaatag atttaaatac cattaaagct aaaaaataag aaacaatata      4140
     caataataat actcgtagga ggagaa                                           4166
//
ID   Copia-5_LH-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   ADOQ01001135;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_LH_;
KW   Copia-5_LH-I; Copia-5_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-256
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001135; Positions   14762   15017.
XX
SQ   Sequence 256 BP; 81 A; 45 C; 52 G; 78 T; 0 other;
     tgtaggccaa taatcttact atcataagat aagtcagtac gagtatcatt cttagtcttt        60
     atgtagctag agatagaaca agaggcgatc gaatcggcgt gcgtgcgcat attaataagt       120
     gaggatcgag tccaagtcag tcgataggcg tatcccaaaa ggaaagcgta tgcgtaagct       180
     cgttgtcgca caatttcata accttaatat atatttgtat tcactttttc gttcagtaat       240
     aaactttatt gcaaca                                                       256
//
ID   Copia-5_LMi-I repbase;    DNA;    INV; 3911 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3911
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3081-3081 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(93..905,848..1738,1719..2006,1991..2254,
FT                 2370..3767)
FT                 /product="Copia-5_LMi-I_1p"
FT                 /translation="MGTAQIPQIERLIGRENYGTWKFAVEAYLRLDDLWGV
FT                 IDGTLKSTDSHFADKDRKAKSKLILLVDPVNYVHIENTANAQEVWNKLRKA
FT                 FEDGGLARRVGLLRELITTQMNRCKNVEDYVNKIISTSNRLRNIGFQIADE
FT                 WVGTLLLAGLPEKYTPMIMGLESSGVPITGDSIKVKILQDVRGETEDETAS
FT                 ALYSKNKKKTQIKCYRCQKMGHFASQCKERISTSGKRYVSNNHEKKSSNQG
FT                 KVLSMHYSFFKKRGIMKKQNGYWIQGHHCTKKGDNEETEWILDSGASLHII
FT                 KNKSVLYDVKDTTNMGISTADGSKLQCELVGKVDLSIVVNKKPQNITAQGV
FT                 HYVKDVTTNLLSVSEIVKKGNKVIFXINGARIIDSCGKIVATASNEKGIFK
FT                 LDTVKNVSSNESHSVYSAKSVLWHRRLGHLNRKGMSLLKDMATGLEDYGMC
FT                 KDPCEICIVGXQARIPFKPSHSKTQELLQIVHTDVCGPMESESIGGNNYFI
FT                 IFIDDYSRYIHVYFMNSKEQVCDIFEEFRILVERQTGKKIKIVRSDNGKEY
FT                 INHRFEGRLKQVGIRHQPHTIDINHIRYSPAQNGVAEQANRTIVEKARSML
FT                 SDAGLPKKFWAEAVSTAVYLINRSPTTAIKSKTPYEVWTGRKPDLSNLRIF
FT                 GCKAMVQIPKRKKWITKEMDIKSRNIFCRYCEESRVIVFNSVNNKIATSSD
FT                 VLPENLKIEPRNVQRCEMKIAVLRRDRNGRRNDQGPTEELRGEEEPGSDED
FT                 KKLERSNEKELQSLNQNETYEWVNMPQKKKLLNTRWIFSIKNPESETTKYK
FT                 ARLVVKGCNQREGIDYKETFSPVVKYSSLRYLLALAVKENMLIHQMDVKTA
FT                 YLNGILEEEIYVMPPKEAQKYCKDKGKVWKLKKSIYGLKQSGYCWNKYLHS
FT                 TLVKMGMKQSKADPCIYIRKSKQELTIMAIWVDDFFILTRDDKQMIVFKEQ
FT                 LQERFNMHDLGEVKQYLGMKIIKQRNGNELWIDQSAYTKRILKKFGMEDCK
FT                 PISTPMEPGIKMMINEEDTDYNKVTSYLEAVGSLLYLAQTSRPDIVFATNV
FT                 VSRFCSNPKEKHWKAVKRIFRYLKGTVNYKLIYCKEGNEELECYSDADWGN
FT                 ELEDRHSISGSCLKLMGGLVSWICKRQRTVALSTVEAEYMALSTTVQETLW
FT                 LKNLMNEIEADNNSRTTTVYCDNQGAINLAKNNVTSARTKHIDVDIISSGI
FT                 TLRRRILK"
XX
SQ   Sequence 3911 BP; 1500 A; 496 C; 856 G; 1057 T; 2 other;
     gttatgggcc cagtacgaaa tagttatacg aaaaattacg agaaggcgtg aagctaaatt        60
     gttcgacgaa atagatcgcg aacgtgaaaa aaatgggtac tgcacaaata cctcaaattg       120
     aaaggctcat aggtcgtgaa aattacggga cctggaaatt tgcggtggaa gcatatttgc       180
     gattagatga tttatggggc gtaatagatg gtacattaaa gtctaccgat tcgcattttg       240
     cagacaaaga taggaaagcc aaatcaaaat taattttgtt ggtggatccg gtaaattacg       300
     tgcacattga aaatactgca aatgcacaag aagtctggaa caagttaaga aaagcttttg       360
     aagacggcgg attggctaga agagtcggat tgctccgtga attaattacc actcaaatga       420
     atcggtgcaa aaatgtggaa gactacgtta ataaaataat atctacatct aatagactga       480
     gaaatatagg tttccagatt gctgacgagt gggttggtac tttattactc gctggattac       540
     cagaaaaata tacgcccatg ataatggggt tagagagttc tggtgttccc ataacaggtg       600
     acagtatcaa ggtaaaaata ttacaagatg tgagaggtga aactgaagat gaaacagcat       660
     cagcattgta ctctaaaaat aaaaagaaga cacaaatcaa gtgctataga tgccagaaga       720
     tgggtcattt tgcttcacag tgcaaggaaa ggataagtac tagtggtaaa aggtatgttt       780
     ccaataacca tgaaaagaag tcttccaacc aaggtaaggt tctttcaatg cattattctt       840
     tttttaaaaa aagggggata atgaagaaac agaatggata ttggattcag gggcatcact       900
     gcacataatt aaaaataaat ctgtattgta tgatgtcaag gatacaacta atatgggtat       960
     atctacagct gatgggtcaa aattgcagtg tgaacttgtt ggaaaagttg atcttagtat      1020
     agtggtaaat aaaaaaccac aaaatattac tgctcaaggt gtgcattatg tcaaagatgt      1080
     taccactaat ttgttatctg ttagtgagat agtaaagaaa ggtaacaagg taatttttka      1140
     tataaatgga gctcgaataa ttgacagttg tggtaaaatt gtagcaactg caagtaatga      1200
     aaaaggaatt tttaagttag acactgttaa gaatgttagt agtaatgaaa gtcattcagt      1260
     gtacagtgcc aaaagtgttc tgtggcatag gagacttggc catttaaata gaaaaggtat      1320
     gtcattatta aaggatatgg caacaggttt agaagactat ggtatgtgta aggatccttg      1380
     tgagatatgt atagtgggaa wacaggcaag aatcccattt aaacccagtc acagtaaaac      1440
     tcaagaatta ctgcagatag ttcatacaga tgtgtgtggt cccatggaga gtgaatctat      1500
     tgggggaaat aattatttta ttatttttat tgatgattat tctaggtata ttcatgttta      1560
     ttttatgaat tctaaagaac aagtatgtga tatttttgaa gaattccgta ttttggtgga      1620
     aagacaaact ggaaagaaaa taaagattgt cagatctgat aatgggaaag aatacataaa      1680
     tcatagattt gaaggacgtt taaagcaagt tggtataaga catcaaccac atacgatata      1740
     gccctgcaca aaatggtgtt gcagaacaag caaacagaac aatagtggaa aaagcgagga      1800
     gtatgctaag tgatgctggt ttaccaaaaa aattttgggc agaggctgta tcaacagcag      1860
     tgtatctaat aaatcgttca cctaccacgg ctatcaaaag taaaacgcca tatgaggtgt      1920
     ggacaggaag aaaaccagat ttaagtaatt tgaggatttt tggctgtaaa gctatggtac      1980
     aaattcctaa acgaaagaaa tggatataaa atccagaaat atattttgta ggtattgtga      2040
     agaatcaagg gttatcgttt ttaattctgt gaataacaag atagcaacca gtagtgatgt      2100
     acttcctgaa aatttgaaga tagaaccaag gaatgtacaa cgttgtgaaa tgaaaatagc      2160
     agtattgaga agagacagaa atggaagaag aaatgatcaa gggccaacag aggagctacg      2220
     aggagaagag gaaccaggaa gtgatgaaga taagtaagac gttcctccgt acaaggaaac      2280
     caaagtatcc tgttatgaaa cgtatgttgc ccagtgtttc aatatgaacc ggaaactgtc      2340
     gaagaagcta tgaatagtaa agattctaaa aattggaaag aagcaatgag aaagaattgc      2400
     aatctttaaa tcaaaatgaa acatatgaat gggtaaatat gccacagaag aaaaaactct      2460
     taaacacaag atggatattt agtataaaaa atcctgaaag tgaaacaacc aagtataaag      2520
     caagattagt ggttaaggga tgtaatcaaa gggaaggtat agattacaaa gaaacatttt      2580
     cacctgttgt aaaatattct tcactgaggt atcttttagc tttagctgtg aaagaaaata      2640
     tgttaatcca tcaaatggat gttaaaaccg cttatctaaa tggaatatta gaagaggaaa      2700
     tttatgtaat gccacccaaa gaagctcaga aatattgtaa agataaagga aaggtttgga      2760
     agcttaaaaa gagcatctat ggactgaaac aaagtgggta ctgttggaat aagtatttgc      2820
     attctacatt agttaagatg ggaatgaagc agtcaaaggc agacccctgt atttatatta      2880
     ggaaaagtaa acaagaatta accataatgg ctatttgggt agatgatttt ttcattttaa      2940
     ctagagatga taagcaaatg attgttttca aagaacagct acaagagagg ttcaatatgc      3000
     atgacttggg tgaagtaaaa caatatttgg gaatgaaaat tataaagcag agaaatggaa      3060
     acgagctttg gatagatcag tctgcatata ccaaaaggat tttgaaaaag tttggaatgg      3120
     aagactgtaa accaatttca actccaatgg aacctgggat aaaaatgatg ataaatgaag      3180
     aagacactga ttataataaa gttacatctt acttggaagc tgtagggagt cttttatatc      3240
     tagctcagac atcaagacca gatattgttt ttgcaacaaa tgtagtaagc agattctgta      3300
     gtaatcctaa agaaaaacat tggaaagcag tgaagaggat cttcagatat ctaaagggaa      3360
     ctgtaaatta taaattaatt tattgtaaag aaggcaatga agaattggaa tgttacagtg      3420
     atgcagactg gggtaatgaa ttagaagata gacactctat ctctggaagc tgtttaaaac      3480
     tgatgggagg cttagtatcc tggatatgta aaaggcaaag aactgtggca ttaagtacag      3540
     tagaggcaga atatatggct ttatctacta ctgtacagga aactttgtgg ctcaaaaact      3600
     taatgaatga aattgaggct gataataatt caaggacaac aacagtttat tgtgataatc      3660
     agggagccat taatttagcc aaaaacaatg taacaagtgc tagaacaaaa cacatagatg      3720
     tggacatcat ttcatcaggg atcacattga gaagaagaat attgaagtga aatacttaag      3780
     ctctgaagaa atgttggctg atttattaac aaaaccattg accaaggaga gattccagaa      3840
     aattgtaaga cagtatggct taattgatgg gactttatat ataataccga aaaatcttgc      3900
     tcaaggggga g                                                           3911
//
ID   Copia-5_LMi-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-211
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3082-3082 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 211 BP; 62 A; 24 C; 37 G; 88 T; 0 other;
     tgttggaaat gtgatcaata tttttgcggt gcttaattaa ttattctttg atgatgataa        60
     tgctgtacat attcttgtta atttattatt ccatgtcttt agtcacgctt gtgaagtgtt       120
     gtaaatgtat tgcagtggca aaaatatata cgataaaaaa ccagaattta tcgtgaaaga       180
     tttatttttt gctgcgctag ttttttcaac a                                      211
//
ID   Copia-5_SI-I repbase;    DNA;    INV; 4218 BP.
XX
AC   AEAQ01008405;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_SI_;
KW   Copia-5_SI-LTR; Copia-5_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01008405; Positions    4822     605.
XX
CC   Positions [1622-2068] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2596..4218
FT                 /product="Copia-5_SI-I_1p"
FT                 /translation="MQGPDADEWLEAIVSEVKSLLKNDTWSVVKRPKDREV
FT                 IGCRFVLRNKHNSDGTLERRKARLVAKGYAQRPGIDFCDTFAPVARMSSIR
FT                 AVSALAAQFGLTLYHFDVTTAYLNGELEEDVFMKIPENIEDSLEEIVRSGR
FT                 KDCKIQKKAKKMLESLANEDNALLLRKSLYGLRQAGRRWHVKLCKILKEFG
FT                 FSQSISDPCVFYLGKGEDILLAVVYVDDIIAVSKTEQAVANLFQHLSTQLD
FT                 IKNLGPVKHCLGIEFSQTKEIITLNQRGYVNDILERFGMSGSNPVGTPVEL
FT                 GTKLRRNEEIAPECKTLPYRELVGALMYLATCTRPDIAHVVSYLSKFNDCF
FT                 STDHWLAAKRVLRYLKGTCDVGLSFRRSTDPLIGFADADWANCVDDRKSYT
FT                 GYAFILGGCPISWESRKQKTTALSSMEAEYMALSEATKEAVHLQRFFGELG
FT                 FPYPKIKLFSDNCGAIKLAENPVFHNRSKHIDVRHHFIRGMLENGVIEVDY
FT                 RSTEDMAADVLTKGLSGPKHRRCLELMGISTGEKYSRDHSRLEGK"
FT   CDS           join(494..1618,1622..2632)
FT                 /product="Copia-5_SI-I_2p"
FT                 /translation="MKDGNDVREHLRKFFDTVDKLSEMEIEVNPDLLTIML
FT                 LYSLPPSFENFRCAIESRDELPTPEALRVKIVEEGDARKSDTRASVPNALI
FT                 AKGPRGRRPKPKSKQSDARETKDAEPFKYKCHRCRKVGHKAADCREALDSA
FT                 TAQNTDVSLYARSEKALIGNAFGNRRTDWCLDSGCSTHLCKDRRDFVEISD
FT                 EGTGRLNLANSASTEIKARGKVSIATDVNGCPRNVDIHDVSLVPDLRTNLL
FT                 LVGKIADRGYTITFNKYIGKVIDENKRTVLIADRIDELYYLRNETPTCNIA
FT                 TKDGNERESFERWHRRMGHLNARDLAVSVRNRKIHGINLIAPAEKLDCEIC
FT                 ILGKMTRAPFPKNTDRNSKLLEIIHSDVCGPMVESNGNARYFITFIDDYSK
FT                 WCEIRLLKGKDEVFQAFKEYKASAEKRTGRCIKYLQSDNGKEFRNERFDAF
FT                 LKEHGIGRRLTVTNTPEQNGVAERRNRTLVEMARCLLIQSGLPSSFWGEAV
FT                 NTANYVRNRCPSSSLNGETAYQKWTGNAPNVRHLREFGCNAYTLVRSPNKG
FT                 KFADRSKKGILVGYSDESKAYRVWIPDEKRVDITRDVKFLEDDKISPTENF
FT                 EDFTAHEEDHAESPDTSEILVPLNATEAEVGLENEPANARNEDEGDEHRDN
FT                 ADDADPPRRGPGRPRIIRTGLRGRPSSITKPLSSMQIRNSLTQRRSQSTKR
FT                 CKGLMQTNGSKL"
XX
SQ   Sequence 4218 BP; 1240 A; 975 C; 1153 G; 850 T; 0 other;
     ccttctgatt atttccgaag accttaacct gccgtaatag gttatgggcc cagagtaccg        60
     cgaaataagc gcgtgaaaga aacacgagtg ccagcacgag aaacgagacg agaacgacac       120
     gaggcattcc aagaaaatgg cgtctcacca taccgtgcgg attgagcccc tgaacaaaga       180
     caacttcgac acttggaaga tccagatgga agcgctgctc ataaaaaacg actcttgggg       240
     atacgtgagt ggacatcacg taaagcccga ggtcattgcc acgaacgcgg aatcggtagc       300
     ggccggcgct gcatgggacg cagcggatcg caaggcgaga tcggacatca tcctggggat       360
     ctgtccgtcc gagctgaaac aaatcaaggg atgcgagaca tcgaacgtca tgtggcgaaa       420
     gctgcagacg atctaccagt cgacgtgaca ggcgcggaag gcgaccctac tgaagcagtt       480
     gactctacat cgaatgaaag atggaaacga cgtccgggag cacctgagaa aattcttcga       540
     taccgtagat aagttaagcg agatggaaat agaggtaaat ccggacttat tgacaattat       600
     gctactgtat agcctaccgc caagcttcga aaactttaga tgcgcaatcg agtcccggga       660
     cgaattgccg acccccgaag cattacgtgt gaaaatcgtt gaagaaggtg acgcgcgaaa       720
     gagtgacacg cgagcatcag tgccgaatgc cctgatagcg aaggggcctc gcggtagaag       780
     accgaagccg aaatcgaagc aaagtgacgc gcgcgaaaca aaagacgctg aaccgttcaa       840
     gtataagtgt catcgttgtc gtaaggtcgg gcacaaggcg gccgattgtc gggaggcgct       900
     cgacagcgcc accgcccaga atacggacgt gagcctgtat gcgcgttctg aaaaagcgct       960
     tatcgggaac gcgttcggaa atcggcgcac ggattggtgc ctggatagcg ggtgctcaac      1020
     tcacttatgc aaggacaggc gcgatttcgt agagatatcg gacgagggga cgggaaggtt      1080
     gaatctcgcg aacagtgcat cgaccgagat aaaagcgaga gggaaagtgt cgattgcgac      1140
     tgacgtaaac ggttgcccta gaaacgttga tatacacgac gtgtcgttag taccggattt      1200
     gcgaacgaac cttcttttgg tcggaaaaat cgccgacaga ggatacacga taaccttcaa      1260
     taagtatatc ggaaaagtaa tagacgagaa taagcgcact gtgttaattg ccgatcgcat      1320
     cgacgagctt tattatttgc gtaacgaaac gccgacatgt aatatcgcga cgaaagacgg      1380
     aaacgaacgc gaatcgttcg aaaggtggca tcgcagaatg ggccacttga atgcgcgcga      1440
     tttagcggta agtgttagaa accgaaagat acacggcata aacctaatag ctcccgccga      1500
     aaaattagat tgcgaaatat gtattctcgg aaagatgacg cgcgcccctt tcccgaaaaa      1560
     taccgataga aactcgaaac tattagagat tatacattcc gacgtatgcg gaccgatgtg      1620
     agtagaatct aacggtaacg cgagatactt tataacgttt atcgacgatt actcgaagtg      1680
     gtgtgagatt cgactgctaa aggggaagga tgaagttttc caggccttca aggagtacaa      1740
     ggcctctgcg gagaaacgaa ccggcagatg tataaagtac cttcagtccg acaacggaaa      1800
     ggagttcaga aacgagaggt tcgacgcttt cctgaaggag cacggaatcg gacgacggct      1860
     aaccgtgacc aacactccag agcaaaacgg cgtggccgag aggcggaatc ggacgctcgt      1920
     ggaaatggcc aggtgtctcc taatccagtc gggactgcca tcatcatttt ggggagaggc      1980
     agtgaacacg gccaattatg tcagaaacag gtgcccgtcg agcagtttga acggcgagac      2040
     cgcttatcaa aagtggactg gaaatgcgcc caacgttcgt caccttaggg aattcggctg      2100
     caacgcatac accctggtcc gtagcccgaa taaggggaag tttgccgatc gatcgaagaa      2160
     gggaatcctt gtcggatact ctgacgagtc caaggcctat cgagtctgga tccccgatga      2220
     aaaaagggtt gacataactc gcgacgtgaa attcttggag gacgacaaga tctcacccac      2280
     cgagaacttc gaggatttca ccgcgcatga ggaagatcat gctgagagcc ctgacaccag      2340
     tgagattctg gtccccttaa atgcgacgga agcggaagtc ggattagaga acgaaccggc      2400
     aaacgcacga aacgaggacg agggagacga gcatagagac aatgcagatg acgcggatcc      2460
     gccaagaaga ggtccaggaa gaccgaggat aataaggact ggactcaggg gaaggccgag      2520
     cagtatcacg aagccgctct cgtcgatgca aatacggaat tcgcttactc agcggagatc      2580
     ccaatcaacg aagcgatgca agggcctgat gcagacgaat ggctcgaagc tatagtatcg      2640
     gaagtcaagt cgttactcaa aaacgataca tggtctgtcg tcaagcgtcc taaggatcgc      2700
     gaggttatcg gctgccgttt tgttctccgg aataaacaca acagcgacgg aacgttagag      2760
     cgaagaaaag ctcgactcgt cgcgaaggga tacgcgcaac gtcctggaat cgacttctgc      2820
     gacacattcg cgccagttgc tagaatgagt tcgatacgag ctgtatcagc gttggcagct      2880
     cagttcggct taacgctata tcatttcgac gttactacag catatttaaa cggcgaattg      2940
     gaagaagacg tcttcatgaa gattcccgag aacatcgaag acagtctgga agaaatcgtt      3000
     cgctccggca gaaaagactg caagattcaa aagaaagcga aaaagatgct cgaaagtttg      3060
     gcgaacgagg ataatgcgct tcttctacgc aagtccctct acggcttgcg tcaagcggga      3120
     aggcgatggc acgtgaagtt atgcaagatc ctcaaagaat ttggattctc tcaatccatt      3180
     tcggatccgt gtgtgttcta tcttggaaaa ggggaagata tcctcttggc tgtcgtgtac      3240
     gtggacgaca tcattgcggt ctccaagaca gaacaagcgg tagccaactt gttccagcac      3300
     ttatcaacgc agctcgacat caagaatcta ggacctgtaa agcattgcct aggaatagag      3360
     ttttcgcaaa ccaaagaaat tatcaccctg aatcaaaggg gatatgtaaa cgatattctc      3420
     gaacggttcg gaatgtccgg atcgaacccc gtcggaacgc cagttgagct cggaaccaaa      3480
     ttgcggcgaa acgaggaaat cgcccccgaa tgcaaaactt tgccctatag agagctcgtc      3540
     ggagctctga tgtacttagc tacatgtacg aggccggaca tcgctcacgt cgtcagctac      3600
     ttgagcaagt ttaatgattg tttcagcacc gatcactggt tggcggccaa gcgtgtatta      3660
     aggtacttga aaggtacctg cgatgtcggt ctttccttca gaagatcaac agacccactg      3720
     attggatttg cggatgccga ttgggcaaat tgtgtagacg acagaaagtc ttacactggc      3780
     tacgcattca tattaggtgg atgtcccatc tcatgggaat cgcgtaagca aaagactact      3840
     gccctctcat cgatggaagc cgagtacatg gccttgagcg aagccacaaa agaggccgtg      3900
     catctacaaa gattcttcgg ggaattgggt tttccgtacc caaaaatcaa attgtttagc      3960
     gacaattgtg gtgctatcaa gctggccgag aatccggtat tccacaatcg ctcgaagcac      4020
     atcgatgtaa gacaccactt catacgagga atgctggaaa acggcgtcat cgaggttgat      4080
     tacagatcaa cagaagatat ggcggcggac gttctcacga agggtctgtc gggccccaag      4140
     catcgaagat gcttagaact catgggcatt tcaaccggag agaagtattc gcgggatcac      4200
     tcacgtctcg aggggaag                                                    4218
//
ID   Copia-5_SI-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   AEAQ01008405;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_SI_;
KW   Copia-5_SI-I; Copia-5_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-196
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01008405; Positions     604     409.
XX
SQ   Sequence 196 BP; 38 A; 53 C; 40 G; 65 T; 0 other;
     tgttaaagtc cctatctgat ctcgcactga tgcttttcga tacgcgcgtt accatcccgt        60
     gcgccctctc tctatcgccg tgacccgtgt gcgagtcttg agagtgccgt agttcatgtt       120
     cttcatcact tgatctttgt ctgtaatcgc aacgtgtctg tcatacaata aagtctctgt       180
     accgtgtgat taaaca                                                       196
//
ID   Copia-5_TrVa-I repbase;    DNA;    INV; 4882 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-5_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4882
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 243-243 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..4335
FT                 /product="Copia-5_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MAQNEVTIPIFDGKSYAKWRFRLKLLLEAKSHWDVIS
FT                 QDQKPADVTAETWKASEIKAQNYIVSSVSNVVLDLIINEKTAKSMITKLDN
FT                 LYLSKSTSTKVMMKRSLLKLKLEDYSDPSKFFFDFESKVNDIIGSGETVSD
FT                 DEKLNCILLALPEKYEHLCDLVDAIPSESKIEYVKTKIISSYEKSKENNQD
FT                 LSNNSDVMLNFARNCSRGKYQGYPSTSSSSCNHCSGQPCENFSSGNWSSSR
FT                 GRGHYNQSSHSGNFQGNSNRGNVNRGNFNHGNSYNHGNSYHNRGNFPRRNH
FT                 RGSRGHQCSNRSNYQRSRGRRRSGRFQTHSASANYLDILPGNDSKEIHVNL
FT                 LGTDNVETIEWLLDSGSSDHIIKTDKYFLEFEELESPINIKVADGHFSQSN
FT                 KVGKIKVVVNIHGKLIRSIINNVYYAPNIKQNLLSVSRIADQNHSVNFTYN
FT                 CARIVDSSNNLRLIALRHGNLYKVKTKIEISESNIYVNSSEKVLLKEKWHR
FT                 LMGHVNFKDLDKLVNLKLAKGLPEKLENDFLDCEICILNKMTNKKFSNDRT
FT                 KAQELLEIIHTDVCGPFNPEALHGAKYFVSFIDDYSKLAYAYPIKSKSEVF
FT                 DKFTECINFWENQTSKKVKTVRCDNGKEYLNDRFFNFAREKGFRIQSCPRY
FT                 KHQLNGTAERFNRTILDKIRCLLAEANLSPFYWPEALKTATYLRNRSLTNT
FT                 IDTKTPHEIFWKSKPDVSNLQIFGNVVFAKVPDEIRKSKLGPKAIKGKLVG
FT                 FTDQGYNILVNNKIIHSRDVKFINNEDKCVKFREKETVIEKSPSNNGEPSL
FT                 FKYSLDSDTQINPVSNDHNVQVEQFYSPIEDNIVSPIPSVEPPIPTKPKNV
FT                 PTRVQPKRNTQLPRKLIDHVLFVNYVDANVPQTFSEASNCNESHKWKEAMR
FT                 EELCSHRENETWEIVKQPINVKTIDVKWLYRIKSDGRFKARLVAKGFQQEY
FT                 LENENIYSPVAKTQTLKTLLSLTVVSKFHIHQMDVQTAFLNGLITTDVYIK
FT                 PPEGFEIEKGYVCKLKKALYGLRESPRDWYECSNEFLVNSLKFKRSPYDPC
FT                 LYIKTTDSKILYLLLYVDDLLLFSTDLAEIAKTKNALSNKFRMSDLGPVQK
FT                 YLGITIENDLNNNKLTINQKDYIESLAKKFNVINSRTYQTPMESNLKLVPS
FT                 EVSNSNPNSEIKFRNLIGALLYISCNTRPDISFSTNYLSRFQNCFDETHYK
FT                 YALRILKYLYLTRNLKLTFSNCPDSEILTCYVDSDWAGDPTDRKSTTGYGI
FT                 YLFGNLVYWKSRKQSSVTKSSTAAEYVALSEAVSEIKFLRQLLESFNINLK
FT                 KPITIYEDNSGALTIAKHGNFTKNSKHIEVAYHFINESYVNGLIDVKKIDS
FT                 KDNVADIFTKSLGKTKFVELRNLLNLS"
XX
SQ   Sequence 4882 BP; 1692 A; 894 C; 809 G; 1487 T; 0 other;
     tggtagcgat tcgtggttct gttttaccgt tattattagt ctcgtgaaag tctcggttcg        60
     aattcgaagt cgtcctcgtt gtccgacatg cacgtgtgcg ttatatactt accggtagtt       120
     attatcaatt catttcaatt atttcgttaa caaataactt caatcatggc gcaaaacgaa       180
     gtaacaatcc caatcttcga tggcaaatct tacgcgaaat ggcgttttag gttaaaactc       240
     cttctcgaag ctaaaagtca ctgggacgtt atctctcaag atcagaaacc tgccgatgtc       300
     actgccgaaa cctggaaagc ctccgagatc aaagctcaga attatattgt aagctctgtt       360
     tctaatgttg tccttgattt gatcataaac gagaaaaccg caaagtccat gattaccaaa       420
     ctagataacc tctatctctc aaaatcaact tcaaccaaag taatgatgaa gcgcagtttg       480
     cttaaattga aattagaaga ttattcagat ccttctaaat ttttcttcga ctttgaaagt       540
     aaagtcaatg atatcattgg cagcggtgaa acagtctccg atgatgaaaa actgaattgc       600
     attcttcttg ctcttcctga aaaatatgag cacctttgtg acttggtgga tgcaatcccg       660
     agtgaatcaa aaatagaata tgtcaagaca aaaatcatct cttcatatga aaaatccaag       720
     gagaacaatc aagatctgtc caacaactca gatgtcatgt tgaattttgc ccgtaactgt       780
     agccgcggaa agtatcaagg atatccatct acctcaagtt catcctgcaa ccactgttct       840
     ggtcaaccgt gtgaaaattt ctcttctgga aactggtcta gctcaagggg aagaggtcat       900
     tacaatcaat ctagtcattc tggaaacttt caaggaaact ccaaccgtgg aaacgtcaat       960
     cgaggaaact tcaatcatgg aaactcttat aatcatggaa actcctatca taatcgtgga      1020
     aactttccca ggagaaatca tcgaggatca aggggtcatc agtgctcaaa ccgaagcaat      1080
     tatcaacgct caagaggtcg tagacgttct ggtcgattcc aaactcattc agcatcagcg      1140
     aactacttag acattttacc aggtaatgat tcaaaagaaa ttcatgtcaa tttgttaggt      1200
     actgataatg ttgaaactat tgaatggctt ttagatagtg ggtcttctga tcatattatt      1260
     aaaacagata aatattttct tgaatttgaa gaattagaaa gtcctataaa tatcaaagta      1320
     gcagatggtc atttctcaca gtcgaataaa gtaggtaaaa taaaagtggt agtaaacatc      1380
     catggaaagt taattcggag catcattaat aatgtctatt atgcacctaa tataaaacaa      1440
     aatctcttaa gtgtatctcg tattgctgac caaaatcaca gtgttaactt cacctataat      1500
     tgtgctcgaa ttgtagacag ttctaacaat ttacgtctaa ttgctttaag acatggaaat      1560
     ctttacaagg taaaaactaa aattgaaatt agcgaatcaa atatctatgt aaattcctca      1620
     gaaaaggttc tgctgaaaga aaaatggcat cgtctaatgg gccatgtcaa tttcaaagat      1680
     ctggataaac ttgttaatct aaaattagct aaagggttac ctgagaaact agaaaatgac      1740
     tttttggact gtgaaatttg cattttaaat aaaatgacca acaaaaagtt ttcaaatgat      1800
     agaactaagg cgcaagaact tttagagatc atccacacgg acgtctgtgg tccttttaat      1860
     cctgaagctc ttcatggtgc taaatacttt gtatcgttta ttgatgatta tagtaagttg      1920
     gcctatgcct atccaatcaa atcaaaaagt gaggttttcg acaaattcac tgaatgtatc      1980
     aatttttggg aaaatcaaac cagtaaaaag gtcaaaactg tcagatgtga caatggtaaa      2040
     gagtacctga atgatcggtt cttcaatttt gctagggaga aaggttttcg tattcaatca      2100
     tgtcctcgtt ataagcatca gctcaatggc acagcagaaa ggttcaatcg aacaatttta      2160
     gataaaatta ggtgtttact tgctgaagca aatttaagcc ccttttattg gccagaagcc      2220
     ttaaaaacgg ccacttatct cagaaatagg tccttaacca acacaattga tactaaaacc      2280
     ccacatgaaa tcttttggaa aagtaaacct gatgtttcaa atctccaaat ttttggtaat      2340
     gtagttttcg ctaaagtccc agatgaaatt cgaaagagta aactaggtcc aaaggcaatc      2400
     aagggaaaat tagttggttt tactgatcaa ggttacaata ttctagtcaa taacaagatt      2460
     attcactcaa gagatgtgaa gttcattaac aatgaagata aatgtgtaaa attcagagaa      2520
     aaggagacag tcattgaaaa atctccctct aacaatggtg aacctagtct ttttaaatat      2580
     tcattagata gtgataccca aataaatcct gtaagtaatg atcataatgt acaagtagaa      2640
     caattttaca gcccaattga agataatatt gtcagtccga ttccatctgt tgaaccacct      2700
     atcccaacga aacccaaaaa tgtaccaact agagtgcagc caaaacgcaa cactcagtta      2760
     cctagaaaac tgattgacca tgtactcttc gtaaactatg tcgatgcaaa tgtgcctcaa      2820
     actttttcag aagcttcaaa ttgcaatgaa tcccataaat ggaaggaagc gatgagagaa      2880
     gagttatgta gtcataggga aaatgaaaca tgggaaatag taaaacagcc cattaatgtc      2940
     aaaaccatag atgtaaaatg gctttatcga atcaaaagtg atggaaggtt taaagcacgc      3000
     ctagtggcaa aaggctttca acaggaatat cttgaaaatg aaaatattta ttctccagtc      3060
     gctaagaccc aaactttaaa aactctgttg tctctcactg ttgtttctaa gttccacatc      3120
     catcaaatgg acgtacaaac ggcattttta aatgggttaa ttactactga tgtctacatt      3180
     aaacccccag aaggttttga aatcgaaaaa ggttacgttt gtaaattaaa aaaggccctt      3240
     tacggtctgc gtgaaagtcc aagggactgg tacgagtgtt ctaacgaatt tctagtcaat      3300
     tcattaaaat ttaaaaggtc cccttatgat ccatgccttt acatcaaaac aactgactca      3360
     aagatattat atctactttt atatgtagac gatttgttgt tattcagtac cgaccttgca      3420
     gaaattgcaa aaactaaaaa tgcccttagt aataaatttc gaatgtctga tttaggacca      3480
     gttcaaaagt atttgggaat tacaatcgaa aacgacctga ataataacaa attgactatt      3540
     aaccaaaagg actacattga atcacttgca aagaaattta atgtcattaa ttcaaggact      3600
     tatcaaaccc caatggaaag taatctcaaa ttagtaccgt ctgaggtgtc aaactcaaac      3660
     cctaactcag aaatcaaatt tagaaattta attggtgcat tactttacat aagctgcaat      3720
     actagacctg atatttcatt tagcacaaat taccttagtc gatttcaaaa ctgcttcgat      3780
     gaaacgcatt acaaatatgc cctccgcata ctaaaatatc tatatctcac tcgaaattta      3840
     aagttaacat tttcaaattg tccagactct gaaattctaa cttgttatgt cgactctgac      3900
     tgggcaggtg acccaacgga tagaaaatct acaacaggct atggaatcta tttgtttgga      3960
     aatttagtgt actggaaatc tagaaagcaa tcctcagtga cgaaatcgtc cacagcggca      4020
     gaatacgtgg ctttgtcaga agccgtatct gaaattaaat tccttcgcca gttgttagaa      4080
     tcgtttaaca ttaatttaaa aaaacctatt acaatttatg aagataattc aggcgcctta      4140
     accattgcca aacatggtaa tttcacaaag aattctaaac atattgaagt tgcatatcac      4200
     tttattaacg agagctatgt aaatggctta attgatgtaa aaaaaattga ctctaaagat      4260
     aatgtcgctg atatctttac caaatcttta ggcaaaacca aatttgtgga attaagaaac      4320
     ctgctaaatt tgtcgtgata ctatcatatg tttgcttgaa tctgcaacca agtttttttt      4380
     ctgttttctc taactttaaa gagaatctta gtgaaatata accatggata tttcaccaac      4440
     tttctcttcg tgaatcttct ttttctctct caaacagtac aacagcattt gcatttccat      4500
     caagcctttt tttgagttga gactggccat ctcaacccaa ttaattactg gcaaaattgt      4560
     aaacttctta tttccttttt ttgtcgatgt tgtaaaaact gttccactac tactcctact      4620
     gtcacaattt ttaaggaggc gtaacaacac tcctggcagt aatttttttt ttctcttctc      4680
     tttcttgcag attcaaattc aatcacaagt gaagcaaatt tttaaatgct tactggtctg      4740
     tgtcggaacg tatcaaatct caatgtaact caatgtaaat tcatctccaa ttaggttaag      4800
     aatttcttac catttttatt tttattattt gtaacatgta aatatctatc aaaaagaaaa      4860
     ctagtaaaaa attcaggagg cg                                               4882
//
ID   Copia-5_TrVa-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-5_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 226-226 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 224 BP; 59 A; 44 C; 29 G; 92 T; 0 other;
     tgttaaatat agtctttgtc taatgttaaa gtatagtctt tgactcgttc ctcactgcgt        60
     ataagcctgt gcctgtataa ctgtataagt cagctgtcaa gtcgtataag ttactatgta       120
     tccagtccat tgcaattttt attttatcgt tctttaatat atcacaaatc tattctcaac       180
     ttagtctcgc ccatttattt tcgtctgatt atcaattctc aaca                        224
//
ID   Copia-60_AA-I repbase;    DNA;    INV; 4175 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-60_AA_;
KW   Copia-60_AA-LTR; Copia-60_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4175
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2594-2594 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1496-2026] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..4165
FT                 /product="Copia-60_AA-I_1p"
FT                 /translation="MSRNQNEGGAEGIGDGQNANPGRTGGESIPRVPAVSG
FT                 ISLPATERLRGRENYTSWAFATKMLLIREGTWDAVTRQAEDPADAISLRAL
FT                 ATICLSIEPVNYSLVQSAETAKAAWTNLKNAFQDDGMTRRIGLLRKLTSIR
FT                 LSECSSVEDYVSQMMSTSHKLSEVGFKVDDTWLASLLLMGLPEMYEPMIMG
FT                 LEASGTRITADAVKAKILQDVKMSSATKSSSSDGAFYSQPNKARQKDKSAV
FT                 KCFKCKRLGHYASECQKREANDKKEKKSGKQAAFSVRGAPTGVCDEWIFDS
FT                 GATSHMCRNKTILKGAKEVAQRINVANNAESAVVATGTVQLKADVEGNSCC
FT                 LTMSNVLCIPDLALNLLSVSKICNNGYRVEFSKGTCEVRSPTDELVAVGRE
FT                 VGGLYKLCLANAQFSCAAKEEDDMVLWHRRMGHLHEQSLKQLRGMTTGMQF
FT                 RDANIPTCTVCLQGKQHRQPFKKKGTRASEVLELVHSDLCGPMENASIGES
FT                 RYFLTFIDDASRRVFVYFIKSKKEVLDCFKDFKAYAENQTGNRIKRLRTDN
FT                 GLEYVNQEMQRFLKSAGIHHEMTVPYNPQQNGLAERMNRTVVEKARCLLFD
FT                 AKLEKRFWAEAVATAVHLVNRSPTKGLDVTPEEAFSGKKPDLSGLRVFGTK
FT                 VMCHIPKVKRQKWDAKSEPGIFVGYAVQSKGFRVYVPRTKKVIISRDVVFT
FT                 SEVPDTPSPVESNDPDGNRWVQLECGNPVDSGRDGDVVVGIPSARPGATTN
FT                 SENETDDDLDSSVGETDYDSANDTVVTVSSPALPPQQEDPQTVVRRSARER
FT                 VRPGKYLDYDMTCSILPESIACPQVNDEPQSYTEAMGSSDRTSWQKAMEEE
FT                 FESQMNNGTWELTNLPVGRRALKCKWVYKLKTNSDGSVQRYKARLVVKGCS
FT                 QVRGVDYNETYSPVVRYASLRYLLASAAQMGLRVYQMDAVTAFLQGDLSEE
FT                 DIFMEQPEGFADPRAPKKVCRLRKALYGLKQASRVWNTKLDAELKRIGLKR
FT                 SSFDPCVYYHSSGDDVIFIAVYVDDLLVFSNQSRWVEYVKKQLMSKFHMKD
FT                 LGEAEQVLGMRITRSGDTVMLDQQRYIDELLQRFKMTECNPVATPFDGNQR
FT                 LSKEMSPIDDDERQRMASIPFRELVGGLQFLAQCTRPDIAYAVNSVSSFSS
FT                 NPGEAHWTAAKRILRYLKGTKMMKLVYVKQEDRAFEGFSDADWGNDPESRR
FT                 SVTGYVFQFAGGSVSWSCRKQPTVALSTTEAEYMAMSAATQEALWWRGFRS
FT                 ELFGVQMPVQISCDNRSAICLAEKEIGYSPRSKHIDLRHHFVREQVELKTI
FT                 TLQYVESKQQKADVLTKPISGRMFHQAIEALGVAKIHV"
XX
SQ   Sequence 4175 BP; 1139 A; 903 C; 1195 G; 938 T; 0 other;
     ggttatgggc ctgacacgtt gactccttag taacgcgtag caacggatca acaagagtga        60
     aatttttttt tccaaacgct gaaaagagct gaaaattctg aagatttttt tgaaaatgtc       120
     gagaaaccag aacgaaggcg gtgcggaagg tatcggcgat ggacagaatg ccaatccagg       180
     aaggaccggt ggtgaatcca ttccgagggt acctgctgtg agtggaattt cgttacctgc       240
     gacggaacgg ctgcgtggga gagaaaatta cacctcgtgg gcgtttgcaa ccaagatgct       300
     cctgattcgc gaaggaactt gggacgccgt aacacggcaa gcagaggatc cggcagatgc       360
     gatttccctt cgagccctcg ctactatctg cctgagcatt gagccagtga actacagtct       420
     ggttcaaagt gcagaaacag caaaggcagc gtggacgaat ttgaaaaacg ccttccagga       480
     cgacggaatg acccggcgaa tagggttgct ccggaagctg accagcatac ggctgtcgga       540
     gtgtagttcc gtggaagatt atgtaagcca gatgatgtcg accagtcaca aactgtcaga       600
     agttggtttc aaagtcgacg acacgtggtt agcaagtctt cttctgatgg gtttgccgga       660
     aatgtatgag cccatgatca tgggtcttga ggcgtccgga actcgaatca cagctgatgc       720
     agtcaaggcc aagattcttc aagatgtgaa gatgagcagt gcgacgaaat ccagctccag       780
     tgacggagcc ttctacagcc aacccaataa ggctaggcag aaggacaaaa gtgcggtgaa       840
     atgcttcaaa tgcaagcgat tggggcatta tgcgtccgag tgtcagaagc gagaggccaa       900
     cgacaaaaag gagaagaaat ccggaaagca agccgctttc agtgttcgtg gagcgccaac       960
     cggcgtgtgc gatgagtgga tttttgactc cggggcgacg tcccatatgt gccgtaacaa      1020
     gacgattttg aaaggtgcca aggaagtggc acagcgcatc aacgtggcaa ataacgcaga      1080
     gtccgcagta gtggcaacag gcaccgtgca gcttaaagca gatgtggaag gtaattcgtg      1140
     ctgtttgacg atgtctaatg tcctgtgcat tccagacctg gcgcttaatc tgttgtctgt      1200
     gagcaaaatt tgcaacaacg gctatcgagt tgaattctcc aagggcacct gtgaggtgcg      1260
     atccccaact gatgagctcg ttgccgttgg cagggaggta ggaggcctct acaagttgtg      1320
     cttggccaac gcgcaatttt cgtgtgcggc aaaggaagag gatgatatgg tcctgtggca      1380
     caggcggatg ggccatttgc acgagcaaag cctgaagcag ctacgtggta tgactactgg      1440
     tatgcagttc cgggatgcga atattcccac gtgtaccgta tgcttacaag gaaagcagca      1500
     tcgtcagccg ttcaagaaga agggtactag agcaagcgag gttctcgaac tagtacattc      1560
     ggatctatgt gggccgatgg agaatgcatc gataggcgag agcagatatt ttctgacgtt      1620
     cattgacgac gccagtagga gagtgttcgt ctacttcatc aaatcgaaga aagaagttct      1680
     ggattgtttc aaggatttca aggcgtatgc tgaaaatcaa accggtaatc gcattaagag      1740
     gctccgaacc gacaacggtc tggagtacgt aaatcaagag atgcaacgat tcttgaagag      1800
     tgcgggaatc catcacgaaa tgacggttcc gtacaatccg cagcagaatg gacttgctga      1860
     acggatgaat cgaacagtgg ttgaaaaggc gcgatgtttg ctgttcgatg ccaaattgga      1920
     aaaacgtttc tgggcagaag ccgttgcgac ggcagttcac ttggtcaacc gttcaccgac      1980
     taaaggacta gatgtgactc ctgaagaagc tttcagcggc aagaaaccgg acctttccgg      2040
     actacgagtg tttggcacaa aggtgatgtg tcatattccg aaggtcaaga ggcagaagtg      2100
     ggatgcgaaa tccgagccag gaatctttgt tggatatgct gtccagtcga agggtttccg      2160
     ggtctacgtt ccgcgaacca agaaggtcat catcagtcga gacgttgttt tcacgagcga      2220
     ggttccagat acaccaagtc cggtcgaatc aaacgatccg gatggtaata gatgggtgca      2280
     gttggagtgc ggaaatccgg tcgattctgg tcgtgatggc gatgttgttg tgggcattcc      2340
     gtccgctagg ccaggggcta cgaccaacag cgaaaacgaa accgacgatg accttgacag      2400
     cagcgtcggt gagacggact atgacagcgc aaatgatact gttgttacgg tgtcttctcc      2460
     tgcgctccct ccgcaacaag aggatccaca aacggtggtc aggcgcagcg cgagggagcg      2520
     cgtacgccca ggcaagtatt tggattacga tatgacgtgc agtattcttc ctgaaagtat      2580
     tgcgtgtcca caggttaacg acgaaccaca atcgtacaca gaggccatgg gaagctccga      2640
     ccggacgtcg tggcaaaagg cgatggaaga agagttcgag tctcaaatga acaacgggac      2700
     ctgggagcta accaatcttc cggtaggacg cagagcgtta aaatgcaagt gggtctacaa      2760
     gctgaagact aattccgacg gatcagtaca gcgttataaa gctcgacttg ttgtcaaagg      2820
     ctgttcgcag gtgagaggtg tcgactacaa cgagacgtac tctccggtag tcaggtatgc      2880
     cagtcttcgc tatctgctgg cttcagctgc tcaaatgggt ctccgtgtgt accaaatgga      2940
     cgctgtgaca gcgttcttgc agggagattt gtccgaggag gatatcttca tggagcagcc      3000
     cgaaggattt gcagacccaa gagctccgaa gaaggtttgt cgtttgcgta aagctttgta      3060
     tggtctgaag caggctagtc gggtatggaa cactaagctt gatgcggaat tgaagcgaat      3120
     cggcctgaag cgttccagtt ttgatccatg cgtgtattac cattcaagcg gtgacgacgt      3180
     catcttcatt gccgtttatg tcgacgattt gctggtgttt tccaaccagt cgaggtgggt      3240
     ggaatacgtc aagaaacagt tgatgtccaa attccacatg aaggatctcg gagaagcgga      3300
     acaagttttg ggaatgcgga tcacccgttc aggagatacg gttatgttgg accaacagcg      3360
     gtacatcgat gagctacttc agcgcttcaa gatgactgag tgcaacccag ttgcaacgcc      3420
     gttcgatggg aaccaacgat tgtcgaagga gatgagtcca attgatgacg acgaaaggca      3480
     gcgtatggct tcaataccgt tccgtgagtt agttggcggt ctacaatttc tggctcaatg      3540
     cacgcgaccc gatattgcgt acgcagtcaa ttctgtcagc agttttagca gtaatcctgg      3600
     agaggcacac tggacggcgg ccaagagaat cttgcgttac ctgaaaggaa ctaagatgat      3660
     gaaattggtc tacgtgaagc aagaagacag agcgttcgaa gggttcagcg atgcggattg      3720
     gggtaatgac cccgaatcaa ggcgatcagt caccggatac gtttttcaat tcgctggtgg      3780
     atcagtgtca tggagttgtc gcaagcaacc aaccgttgca ctctctacga ccgaagcaga      3840
     atacatggca atgtctgccg caacacagga agcgttgtgg tggcgaggat ttcgaagcga      3900
     actattcgga gttcaaatgc cagttcaaat aagttgtgac aatcgaagtg ctatttgctt      3960
     ggcagaaaag gaaattggat attcaccccg cagtaagcac atcgacttgc gtcatcattt      4020
     cgtgagagag caggtcgaac ttaaaacaat tacgctacaa tacgtggaat cgaaacaaca      4080
     gaaggcagac gtcctgacga aaccaatcag cggaaggatg tttcatcaag ccattgaagc      4140
     cttaggagtt gcaaagattc atgtttaagg gagga                                 4175
//
ID   Copia-60_AA-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-60_AA_;
KW   Copia-60_AA-I; Copia-60_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-122
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2595-2595 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 122 BP; 39 A; 19 C; 20 G; 44 T; 0 other;
     tgttagaata agtaagccat gaattctgat gttagaataa gtaagccatg aattcttaat        60
     ttgaatataa cttcagttct tattagctat cgctacgcag cagacgtgtt tcatttctat       120
     ca                                                                      122
//
ID   Copia-61_AA-I repbase;    DNA;    INV; 4334 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-61_AA_;
KW   Copia-61_AA-LTR; Copia-61_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4334
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4334
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2596-2596 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..4111
FT                 /product="Copia-61_AA-I_1p"
FT                 /translation="MNASSSSGRRNGGYERGTLERTMPMTGVLIGGDRANV
FT                 FDGTEANFGAWKWRVQNRLAKLKLLYTLLRTPVEETYYEPVAGATPDQEKA
FT                 RKDKLQKRLDDDVEALDEIVMLVNNDVLNKLIGLNYAKEAMDILVKTYEKT
FT                 GTAAMVNMRERLNTIKYRHRDSLRKIFDEYDLIVRELERMQSGITQEEKVH
FT                 ALLSAIPERYKHVKGALLVLSNQELCQKSTTEIKRMFLDAEAGEEKVERKN
FT                 VALKSKKLTTRCFGCNEVGHFKNKCPLMKKFVAKEKEKNNKRSYAMMMKTN
FT                 RKKMNDKRVRFVVDSGASDHMINKEDLLEDVEELPKPLTISTAKSGENLRA
FT                 TKAGKLRLKSVIGLNKIKKIELYDVLFVPGLEENLLSVRKASLHGKRVTFK
FT                 NKEVIFEHGTEVIGKGEFAEGLFYLDCIWDGKSEAEEARGSAYVGKQASFD
FT                 TWHRRLGHISATGLEQLIKKGMVEDINLASKDEDQSGVCDGCLAGKQAAFK
FT                 FQDMKLPRSKRPLELIHTDVCGSMEQETYDGYRYFVTFIDDYTHFVVVYLL
FT                 KHKSEVFEKFKEFEAMVSAYFEARISMLRCDNGGEYTSNEFQRYCKQAGIQ
FT                 MMYTVPYTPQQNGVSERMNRSLMEKVRAMLYESDLPKDMWGEALYAATYLI
FT                 NRSPTRGLESNRTPYEMWFNKRPSLKHLKIFGCKAFKQIPKEKRQKLDSKT
FT                 KSLIFVGYANNGFRLWNEETRSIEIGRNVVFDETSIPFHGNRSIETEPGEQ
FT                 DLVLGARSRKGENHDAFDEDPRQDSEEEESSSDREQLEDDTLIQEGRNSLE
FT                 ESVSETDYQSTCETEADEGDNDSDDDQELRRSKRDRKPPHWYSDYTAKKAI
FT                 IHNHEIPQNIKDLKELADWEEWRQALQEELDALHSNETWTVVNCVPKGVKP
FT                 IYSKWIFSLKEDGRHKARLVAKGCSQRPGFDYCETFAPVAKLESVRLALAL
FT                 ANENKLHVHQMDVKTAFLNGHLEEEIFMKLPPNENGEIQIVRLNKSLYGLK
FT                 QASRSWNRCFNDAMEELGFIPLKNDCCIYISKTTGIILILYVDDILLIAEN
FT                 MDKISWIKEKLGRLFQMKDLSEVKYFLGMEIYRDFENQIIEISQEQYVEKL
FT                 LQRFGMAECKPVGTPLDNNTKWSKSEGKLTDQPYRELVGCLQYLSLTSRPD
FT                 ICAAVNTLSKYTNCATEWHWSGLKRILRYLRGSSNTKIVFSKHKDHPAVIG
FT                 YADADFANDPDDRKSVSGYAYLVYGNLISWSTKRQPTISLSTSEAELIALC
FT                 AATKEGLWITKLLKELDVVITPFIIMEDSIPCISIAEEPRSHQRIGRGNNA
FT                 IHHYGR"
XX
SQ   Sequence 4334 BP; 1451 A; 772 C; 1072 G; 1039 T; 0 other;
     aatggttatg ggcccagtgg ttaactggct ctaaacagtt ggataaactg accatatatc        60
     aaatcagtgg ttaactgata gtcggaagac aagttgacgg acgagctgtt ggacgattgc       120
     tggacgagac gactacagac gatcttgaag aggagcgatg aacgcaagta gcagcagtgg       180
     tcggaggaac ggtggctacg agaggggaac tctcgagcgc accatgccga tgaccggagt       240
     tctcatcggt ggagaccgcg ccaatgtctt cgatggaaca gaagccaact tcggagcgtg       300
     gaaatggcgg gtgcagaatc ggctagcgaa actgaaactg ctctacacat tgctgagaac       360
     ccctgtagag gagacgtatt atgaacccgt tgccggtgct actcctgatc aagagaaggc       420
     gaggaaggat aagctacaga agcggctaga tgatgacgtc gaggcactgg acgaaattgt       480
     catgctggtt aataacgacg tgttgaacaa attgatcggc ctgaactacg caaaggaggc       540
     aatggacatt ctagtcaaaa cctacgagaa gacgggcact gcggcgatgg ttaacatgcg       600
     ggagcggctg aacacgatca aatatcgcca tcgagattct ctgcgcaaaa tcttcgatga       660
     atatgacctg attgtgcggg aattagagcg gatgcagtcc ggcattaccc aggaggagaa       720
     ggtacacgcc cttttgtccg ctatccccga acgttataag cacgtgaagg gagcgttgtt       780
     ggttctatcg aatcaagaac tgtgccagaa gtcaacgacc gaaataaaga ggatgttctt       840
     ggatgccgaa gctggagaag aaaaagtgga gcgcaaaaac gttgctctca agtcaaagaa       900
     attgacgacg cgttgctttg ggtgtaatga agtgggccac ttcaaaaaca agtgtcctct       960
     aatgaagaag ttcgtagcaa aagagaagga gaagaataac aagcgttcat atgccatgat      1020
     gatgaagacc aataggaaga agatgaatga caagcgcgta cgtttcgtcg tggattccgg      1080
     agcgagtgac catatgatca acaaggaaga tcttctggaa gacgttgagg aactgccgaa      1140
     accgttgacc atatcaactg ccaaatctgg cgagaacctt cgggctacga aggcgggtaa      1200
     gttgaggctg aagtcagtga ttggtttgaa caaaataaag aaaattgaat tgtatgatgt      1260
     tttattcgtt cctggtcttg aagaaaatct tctttcggtt agaaaggcaa gtcttcatgg      1320
     gaaaagggtt acttttaaaa acaaagaggt catctttgag catggaaccg aagttattgg      1380
     taaaggtgaa ttcgctgaag gattgttcta ccttgattgc atttgggatg gaaagtctga      1440
     agcagaagag gcgcgtgggt cagcctatgt tggaaaacag gcgagctttg atacttggca      1500
     tagaaggctt ggccatataa gcgctacagg tttggaacaa ctgataaaga aggggatggt      1560
     tgaggatatc aatctagctt ctaaagatga agatcagtct ggtgtatgtg atggttgttt      1620
     ggctggaaag caagctgctt tcaaatttca ggatatgaag ttgccaagat cgaaacgacc      1680
     gttggaatta atacacacag acgtatgtgg gagcatggaa caggaaacct acgatggata      1740
     tcgctatttt gtgactttta ttgacgacta tacgcatttt gtagtagtct atctgttaaa      1800
     gcacaaatct gaagtatttg agaaatttaa agagttcgaa gccatggtat cggcatattt      1860
     tgaagcaagg atctcaatgc ttagatgcga caatggagga gaatacacat ctaatgaatt      1920
     ccaaagatat tgcaaacaag ccgggattca gatgatgtat acagttccat acactccaca      1980
     acaaaatgga gttagtgaac gaatgaatag atcattgatg gagaaggtaa gagctatgct      2040
     ttatgaaagc gatttaccta aagatatgtg gggagaagct ttatatgctg ccacatacct      2100
     aatcaacaga tctccaacaa gagggttaga atctaacaga actccttatg aaatgtggtt      2160
     taacaagcga ccaagtttga agcatttaaa aatctttgga tgcaaagctt tcaagcagat      2220
     tccaaaggaa aaacgtcaga aattggattc caaaactaaa tcgttgattt ttgtgggata      2280
     cgcaaataac ggttttagat tatggaacga agaaacacgt tccattgaaa ttggaagaaa      2340
     cgtcgtgttt gacgaaacta gcataccttt tcatggcaat agatcgattg agactgagcc      2400
     tggggaacag gatttggttc taggtgcacg atctagaaaa ggagagaacc atgatgcctt      2460
     tgatgaagat ccaagacaag atagtgaaga agaggaatcg tcatccgata gagagcaact      2520
     agaagatgat actctaatcc aagaaggccg gaactcattg gaagaatcag ttagcgagac      2580
     tgattatcag agcacatgtg aaactgaagc tgatgaaggt gacaatgact cagacgacga      2640
     ccaagaattg agacgcagca agagggacag gaaaccacct cattggtact cggattacac      2700
     ggcaaagaag gctataattc ataatcatga aatcccgcaa aacattaaag atctaaagga      2760
     gctagcagat tgggaagaat ggcgacaagc acttcaagaa gagctagatg cattacatag      2820
     taatgaaact tggacagtgg ttaactgtgt gccaaaagga gtaaaaccaa tatactctaa      2880
     atggattttc tcattgaaag aggatgggcg acacaaagca cggttagttg ctaaaggatg      2940
     ttcacaacga ccaggattcg actattgtga aacatttgca cctgttgcca agcttgaaag      3000
     tgtgcgattg gcactagcac ttgcaaatga aaacaagtta cacgtacacc aaatggatgt      3060
     caaaacagca tttttgaatg ggcatttgga agaggaaatc ttcatgaaac tgccgcctaa      3120
     cgaaaatggg gagattcaaa ttgttcgttt aaataaaagc ttgtacggtt tgaagcaagc      3180
     gagtagatct tggaacagat gtttcaatga tgctatggaa gaactaggat ttattccatt      3240
     aaagaacgat tgttgtattt acatatcgaa aaccacagga ataattctca ttctctatgt      3300
     agatgatatt ctattaattg ccgaaaatat ggataaaata tcctggatta aggaaaaact      3360
     tggaaggtta ttccaaatga aagatctttc cgaagtaaag tattttctgg gaatggaaat      3420
     atatcgtgac tttgaaaatc aaataatcga aatttctcaa gaacaatatg tcgagaaact      3480
     tctccaaaga ttcggaatgg ctgagtgtaa accagtgggg acacctctgg acaataacac      3540
     caaatggtca aaatccgaag gaaaattaac tgatcaaccc tacagagagt tagtaggatg      3600
     ccttcaatat ctctctttaa catcgagacc agatatttgt gctgcagtga acacgttgag      3660
     caagtacaca aactgtgcaa ctgaatggca ttggtcagga ctgaaacgaa ttttgcgtta      3720
     cctgagggga tcaagtaata cgaagattgt tttttcaaaa cacaaagacc atccagctgt      3780
     aatagggtat gcagatgcgg attttgcaaa tgatccggat gacagaaaat ccgtatcagg      3840
     atacgcatac ctggtgtatg gaaatttgat ttcgtggtca acgaaacgtc aaccaacaat      3900
     cagcctatca acgagtgagg cagaattaat tgcactgtgt gctgcaacaa aagaaggttt      3960
     gtggataaca aaacttctca aagaattgga cgtggtaata acgccattca tcattatgga      4020
     agatagcatc ccgtgcatca gcatagcaga ggagcccaga tcacaccaaa gaattggacg      4080
     tggtaataac gccattcatc attatggaag atagcatccc gtgcatcagc atagcagagg      4140
     agcccagatc acaccaaaga atgaaacacc tggacatcaa atatctcttc atcagggatc      4200
     tcatcaagca aggtcgactc aaagttcaat ttcttccgag tgtagatcag ccagctgacg      4260
     cgtttactaa ggggctacct aagaatacgc atagaagatt attcagcttg ctgaacgtgc      4320
     aaattgcggg gaag                                                        4334
//
ID   Copia-61_AA-LTR repbase;    DNA;    INV; 440 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-61_AA_;
KW   Copia-61_AA-LTR; Copia-61_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-440
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-440
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2597-2597 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 440 BP; 165 A; 61 C; 84 G; 130 T; 0 other;
     tgttgaaaat aacatttcaa tctcactgca ttgcaataca gtgaagaaag aaatgtagat        60
     aataacaatt tgccattcat caaatcacat atggtcatcc gacatgtgga acgaagctta       120
     ggaaattgta tccaataaag ttgtatatcc tattgcgtgc aatattgcat gaaaagcttt       180
     caaggggaac ttggagcttt gcattattta ggcagccatt agatgaaaaa tagacgtgtg       240
     ctgtagtcaa tataaatgtg tgcaatagga tgtagagaaa aatgcgaacg tgaaacaaga       300
     aatacgcatg taaatattat agtgtatcga tagagtagaa tacctactga tagtgacctg       360
     acgagattat gttcaataaa attatcctta aaccgtgaag taaatcaaag tgtttttatt       420
     tgattgaatt attcacaaca                                                   440
//
ID   Copia-62_AA-I repbase;    DNA;    INV; 4200 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-62_AA_;
KW   Copia-62_AA-LTR; Copia-62_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4200
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2598-2598 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1517-2035] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(62..2338,2342..4138)
FT                 /product="Copia-62_AA-I_1p"
FT                 /translation="MEEESKERVFLPVFDGSNFSAWKFRMLILLEEHELAE
FT                 CVQRYASDVEELKEELGDSEEQKNKKRKEREKRVKKDRRCKSLLIGRIHDS
FT                 QLEYVRDKQHPKDVWDALHRVFERHSVASRLHLKRQMLSLRYESGDLQQHF
FT                 LQFDRLVREYRATGAALDELDVVCHLLLTLGSAYSAVVTALETMPEDVLTL
FT                 EFVKCRLLDEETKRKGTEMCTVKSEPAAFSGAKQAPKNRRIKCFRCKQEGH
FT                 KLAECPAKKKEDAKKKFVNKSKAHVADQSEVCFAGFSRGSAGADESKNVSW
FT                 FIDSGCSDHLVNDKSLFVELRELPQPVEIAIAKDGEMIVAKQAGTVKVISV
FT                 VDGREIKCSVKNVLFVPELRCNLFSVVRCDEAGMKVVFESESVRIYRDSEV
FT                 VATGKRIKNLYRLDFFVANRNVSDSLLSFGRVPADLELWHRRFGHLNARSL
FT                 EKLIGEEMCVGLKLNGRKKNGSVIVCEPCVAAKQTRNPFQVRKEPRSSRIL
FT                 ELVHSDVCGPIKPVGVGGMRYFVTFVDDWSHFVMVFLMKSKDEVYECFQQY
FT                 AAMVSAKFGRKISRLRCDNGGEYKNRPFVKFCERSGIQIEWTVAHTPEQNG
FT                 VSERMNRSLVERARAMLEDSGVNKCFWGYAVQTAAYLLNRSPSSAIDPGMT
FT                 PYQLWEGSKPDVQKLRVFGCSVFVHIPKEQRGKLDVKSWKGLFLGYAHNGY
FT                 RVWNPTKRQIMHVRDVDFVESMRGENTPGCGVERTSDVFSIAATDDEQSES
FT                 VEAAPDARDVPDTDEQDGGSRAESVSEYESFVEEDRTRAESESGSSSNGEI
FT                 DPVQPTHSGRPVRARKQPAWQADYDMEYAAYALSATEYVEDLPRTLAEAKA
FT                 RKDWPKWEAAVKEELEAHTKNGTWTLTELPGNRKAITSRWVFKIKPGLNGE
FT                 PDRYKARLVARGFDQKFGFDYSETYSPVAKLDTLRSVLAIACRDKLVVHQM
FT                 DVCTAFLNGSLTEEIFMAQPEGFTKGKNLVCRLQKSLYGLKQASRAWNSRF
FT                 HNFVVNHLGFKQSANDRCLYTRGFGATRVIMVLYVDDILIAGASLKAIQLV
FT                 KNCLAKEFEMKDIGEIKCFLGMQVNYDRAAGVMKITQRHYLENVLKRFKME
FT                 DCKPCSTPIENRLKLPKGNEDNRTAQPFRELVGCLSYAALTTRPDLTAAVN
FT                 FYSQLQSCPSDEHWAHLKRILRYVKGSLDFGLVYRADKEAPLLEVFSDADW
FT                 ANDFSDRRSVSGGVFKVFGSTVSWLTKKQHTVALSSTEAELTALCTVACHE
FT                 VWLSRLLQDLGYSCKEPICVYEDNQSAMRIAEESKDFGRIKHVDVKFHFLR
FT                 DLIKDGRIVLKFLSSVEQPADMMTKGLPVAAFRRHRDGIGLVDCSG"
XX
SQ   Sequence 4200 BP; 1054 A; 948 C; 1267 G; 930 T; 1 other;
     ggttttgggc ccggtaatcg tttcgtcggt tccgtcgcgt aatcaagtgg aagtgatttc        60
     gatggaggag gaaagcaagg agcgagtttt tctgccggtt ttcgacggct ccaacttttc       120
     cgcatggaag ttcagaatgc tcattctttt ggaagagcat gaactggcgg agtgtgttca       180
     gcgctacgct tcggacgttg aggagctgaa ggaagagctg ggggacagtg aagagcagaa       240
     gaataagaaa aggaaggaac gtgagaaaag agtgaagaaa gacagaagat gcaagtcgct       300
     gctaatcggt cggattcacg actcacaatt ggagtacgtt cgcgacaaac agcacccgaa       360
     agatgtgtgg gacgcgttgc accgagtgtt cgagaggcat agtgtggcga gccgactaca       420
     cttgaaacgg caaatgctct cgttgcggta tgaaagtggt gatttgcagc aacattttct       480
     gcaatttgac agattagtgc gtgagtatag ggcgaccggc gcggccctcg atgagcttga       540
     cgtagtgtgc catctccttt taactctcgg ttcggcctac tcggcggtcg ttacggcgct       600
     cgagactatg ccggaggatg tgctcacgtt ggagtttgtg aagtgccgcc tcctagacga       660
     ggaaacgaag aggaagggca ccgaaatgtg cacagtgaag agtgagccgg cggcttttag       720
     cggagcgaag caagcaccaa agaacagaag aatcaagtgc ttcagatgta aacaagaagg       780
     ccacaaactg gccgagtgtc ccgcgaagaa gaaggaagac gcgaaaaaga agttcgtaaa       840
     caaatcgaag gctcacgtcg ccgatcaaag tgaagtgtgt tttgccgggt tcagcagggg       900
     cagtgctggt gctgacgagt cgaaaaatgt gagctggttt atcgactcgg gctgctctga       960
     ccatttggtg aacgacaaat cactgttcgt cgaattgcgc gagctgccgc agccggtgga      1020
     aattgcgatc gccaaagacg gcgagatgat cgtagcgaag caagccggaa cagtgaaagt      1080
     gatttccgtc gtggatggca gggaaataaa gtgctcagtg aaaaatgtac tgtttgtacc      1140
     agagcttcgg tgtaacttgt tttctgtcgt acgatgcgac gaagctggta tgaaagtcgt      1200
     tttcgaaagt gagtcggtcc ggatctaccg tgattcggaa gtggttgcca cgggcaaacg      1260
     tatcaaaaac ctctaccgtt tggacttttt cgtcgcaaat cgaaacgtga gtgattcgtt      1320
     gttgtcgttc gggcgcgtac cagcggatct ggaactgtgg cataggcgtt tcggccacct      1380
     aaatgcgcga agcttggaga aacttatcgg agaagaaatg tgtgttggcc tgaagctaaa      1440
     cggtcgcaaa aagaacggaa gcgttatagt gtgcgaaccg tgcgtcgcgg ccaagcaaac      1500
     acggaatccg ttccaagtgc gtaaagaacc acgatcgtcg cgcattctcg aactcgtaca      1560
     ttcggacgtt tgtggaccga tcaagccggt cggtgttggt ggtatgaggt attttgtgac      1620
     ttttgtggat gactggagcc actttgtgat ggtgttctta atgaaatcaa aagacgaggt      1680
     gtatgagtgc ttccagcagt atgccgcgat ggtatctgca aagttcggtc gtaagatttc      1740
     gcgtttgcgg tgtgataacg ggggagaata taaaaaccgc ccgtttgtga agttttgtga      1800
     gcgaagcgga attcagatcg agtggacggt agcacatacc ccggagcaga acggcgtttc      1860
     cgaacgcatg aaccgctctc tcgttgagcg cgctcgggct atgctggaag actccggcgt      1920
     gaacaagtgc ttctggggtt acgcagtaca gactgcggcc tatctgctga accgtagccc      1980
     ttccagcgcc atcgatcctg gcatgactcc ataccagctg tgggaaggat caaagccgga      2040
     cgtccagaaa cttcgagtct tcggctgctc cgtattcgtt cacattccga aggagcaacg      2100
     aggtaagttg gacgttaaat cttggaaagg gcttttcctg ggctatgccc acaacggcta      2160
     tagagtgtgg aacccgacga agcggcagat tatgcacgtt cgtgacgtcg attttgtaga      2220
     gtccatgcgc ggggaaaata ctccgggatg tggcgttgag cggacatcgg atgttttctc      2280
     tattgctgcg accgatgatg aacaatccga atcggttgaa gcggcaccgg atgcaagatt      2340
     ngacgttccg gatacggacg agcaggatgg cggttccaga gcggaatcgg tgtcggaata      2400
     cgagagtttc gtcgaagaag accgcactag agcagaatcg gaatccggct cgagcagcaa      2460
     tggcgaaatc gatccagtgc aacccaccca ctctggtcga ccagtgagag cgcggaaaca      2520
     accggcgtgg caagctgact atgacatgga gtacgcagcg tatgcgttga gcgccacgga      2580
     atacgtcgag gatttgccaa ggacgctggc cgaagcaaaa gcgcggaagg actggccgaa      2640
     gtgggaagca gcggtcaagg aggagttaga agcccacacg aagaacggga cttggacttt      2700
     gaccgaacta ccaggaaatc ggaaggcgat tacaagccgc tgggttttta agataaagcc      2760
     tggcctgaac ggagaaccgg atcgctataa agctcgacta gtggccagag gcttcgacca      2820
     aaagttcggc ttcgattata gtgaaacata ttctccggtc gccaaactcg acacgttgcg      2880
     ttctgtcttg gcgattgctt gtcgggacaa actggtggtg catcaaatgg acgtttgtac      2940
     cgccttcttg aacgggtcgc tgactgagga gatttttatg gcgcaaccgg aggggttcac      3000
     gaaaggaaag aacctagtct gccgtttgca aaagtccctc tatggcctta agcaggcctc      3060
     tcgggcctgg aacagccgat ttcacaactt tgtagtgaac caccttggct tcaagcaaag      3120
     cgccaacgac cggtgcttgt acacccgtgg attcggagcg acaagggtga ttatggtcct      3180
     ctacgtggac gacatcttga ttgccggagc atcgctgaaa gcaatccagc tggtgaagaa      3240
     ctgtctagcc aaggaatttg agatgaagga catcggtgaa atcaagtgct tcctgggaat      3300
     gcaagtcaac tatgatcggg ctgccggcgt gatgaagata actcagcgac actatctgga      3360
     gaacgtcctg aaacgtttca aaatggagga ctgcaagccg tgctcaacgc ccatcgagaa      3420
     tcgcctgaag ctgccgaaag gaaacgaaga caatcggacc gcgcagccgt tcagggagct      3480
     agttggttgc ttgtcgtacg cggcgttgac cactagaccg gatctgacag cggcagtgaa      3540
     cttctacagc cagttgcaga gctgcccaag cgatgagcac tgggctcatc taaaaaggat      3600
     tttgcggtac gttaaaggat cgctcgattt cggcctggtc taccgggcgg acaaagaagc      3660
     gccgctgctg gaggtgtttt cggatgccga ctgggccaac gacttttctg atcgtcgctc      3720
     tgtgagtggt ggtgtgttta aggtgttcgg cagtacagtc agctggctca ccaagaaaca      3780
     gcataccgtc gctctctcat cgactgaggc agagctgact gccctctgta cggtggcctg      3840
     ccacgaggtt tggctgagcc gtcttctgca agatttggga tacagttgca aggaaccgat      3900
     ctgcgtttac gaggataatc agtcggctat gaggatcgcc gaggaatcga aagacttcgg      3960
     acgcatcaaa cacgtcgatg ttaagttcca ctttctgcgg gacttgataa aggatggccg      4020
     catcgttctc aagtttctgt catccgttga acagcccgcg gacatgatga ctaaagggct      4080
     tccggttgca gcattccgac gtcatcgtga cgggattggc ctggtggact gcagtggctg      4140
     agcaggggtg ttgagtgtac agcccctagc actcaccaag tctacacact cagtgggcta      4200
//
ID   Copia-62_AA-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-62_AA_;
KW   Copia-62_AA-I; Copia-62_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-174
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2599-2599 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 174 BP; 44 A; 45 C; 28 G; 57 T; 0 other;
     tgttgccccc atcgaaggtg acaccactgc tgagagaaat aacaaagaca acaacacttc        60
     cgtttttcat tccatgtttc ttttctcgtg aataaacacg ctttttattt gaactcgcta       120
     atttcgtcag tctcgctagt ttttccttgt gtggccatcc gaagaaccac ttca             174
//
ID   Copia-63_AA-I repbase;    DNA;    INV; 4162 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-63_AA_;
KW   Copia-63_AA-LTR; Copia-63_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4162
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2600-2600 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1593-2096] - Integrase core
CC   'AATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..4136
FT                 /product="Copia-63_AA-I_1p"
FT                 /translation="MEEDRTQRVYLFDGTNFSNWSFRMESYLEELGLLHCI
FT                 EKTLEEEDFFPVDEEDSAAVKKEKEDQRTKRKQEDAKCKSILIHKIADSQL
FT                 EYIRGKSSPRAIWTTLQHTFERKGVSGVFYLLKQLAGMKHDERRTMEEHIL
FT                 AFEKTIRELESAEIKFDKPVVVFFLLQSMPKSYDQLITVLETLPVEQCSME
FT                 FVKSRLLSEDAKRQHNGDRPDTSTAFAGRSGKFVFKCHACGKPGHKRVNCP
FT                 ENVKNERPASKPEKHKKKSKAHVAESGGDVAFMTVDGDPPGGKFRWILDSG
FT                 ASEHMVSDKSFLQNVRTLDTPIVINVAKSGVSLTSRVTGEMKMIANVEGKQ
FT                 LTCTVHNVLYVPGLYANLFSVKRVAERNMEVTFGKDGARITRGSEVVCTAS
FT                 RKGRLYELDVDVPKIESAMVADPESKLTLWHRRYGHIGNTGLVKLVRSGMV
FT                 EGIDVGGNLKPDAGVCEPCMMGKQARQTFEEAVKPRSSRPLELIHTDVCGP
FT                 FTPASWDGQKIFVSFIDDFTHFTAVYALKSKSDVLDAFRKYAAMATVHFGN
FT                 RIARLRSDNGGEYINANFIKYCEDAGIVMEPTVPYTPQQNGVAERMNRTIM
FT                 ERARSMLDDAGFKRSMWSEAVLTAVHLINRSPTAALDENKTPYEMWFGHKP
FT                 NVSGLRVFGSKAYCHVPKEKRTKLDAKSQVCYLVGYGINGYRVWDPVRRKI
FT                 VIARDVVIDELRAKRRVEVYTNDHLVSDRPVTLDEEPEQRNEASRDQNSEP
FT                 AIDESEDEAAGGCDTSIEEFGSAEDDEVPVRRSGRLRKQPARFSDYEVCIA
FT                 FALNAENYVEALPDDINELRKRDDWPEWKRAIDDEMRALEKNNTWDIVDLP
FT                 AGARPVPCKWVFKIKYNDNGSIDRHKARLVAKGCSQRQGYDYQETYAPVVR
FT                 MTTVRTLLSVAVQRNLHLHQMDVRTAFLNGKLSETVYMRQPPGFERGNKVC
FT                 KLNKSLYGLKQAPRSWNERFNSFILKLGFQRSQYDSCLYTRKVNGVWMYLV
FT                 LYVDDIVLASSSLEEIRNIKQRLANEFEMDDMQEMKNFLGMRIQYNMEKGT
FT                 LLLNQTKYISALLKRFGMDGCKPASTPLDANLKLERKKDGDEATQYPYREL
FT                 VGCLTYLMLSTRPDISIAVNTMSRFQSGATDVHWSHLKRVLRYLQGTKHLS
FT                 LEYRRDACADPLIGFADADWGSDMDDRRSTSGYVFQVYGNTVSWTTRKQAT
FT                 ISLSSTEAEYVSLSQSSCEAIWLRNLLTEFGVTMTNPLVIYEDNQSCIHIA
FT                 EEPRDQKRMKHLDIRYNFIRECVQNNVINVKYIPTGDQLADVFTKGLPAAA
FT                 FLKHRSTLGLRGGVRN"
XX
SQ   Sequence 4162 BP; 1150 A; 926 C; 1164 G; 921 T; 1 other;
     ggttatgggc tctccgcgta accatagcaa ccgcgagtaa gtacgccgca atcggcgggt        60
     gaaatttttt tttttcgcgc gtgtggcgag taagtttttc ggtagcgtgg tttcgtcgtt       120
     tttcaaaatc ggaaaatttc gcgaaaacgg aaatggagga agacagaacg cagcgcgtgt       180
     acctgttcga cgggacaaat ttttcaaatt ggagtttccg gatggagtcg tacctggaag       240
     agttgggttt gctccattgc atcgagaaga ctctggaaga agaagatttt ttcccggtgg       300
     atgaagagga ctcggcagcg gtgaagaagg aaaaggaaga ccagcggacc aagcggaagc       360
     aagaagacgc caaatgcaag tcgatcctga tccacaaaat cgcggattcc cagttggaat       420
     acatccgcgg aaaatcgtcc cccagagcga tttggaccac gctgcagcac acattcgagc       480
     ggaaaggagt ttcaggcgta ttctaccttt tgaaacaact tgccggaatg aagcacgacg       540
     agagacgaac aatggaggag cacatcctag cgttcgaaaa gactattcga gagctagaat       600
     cggcggaaat aaaattcgac aagccggtgg tagttttctt cctactacag tcgatgccga       660
     aatcgtacga ccaactcatc acggtactag aaacgttacc ggtggagcag tgctcgatgg       720
     aatttgtcaa gtcgaggctg ctcagcgagg acgcaaaacg gcagcacaac ggggacagac       780
     cggacacgag cacagctttc gctggacgaa gcggtaagtt tgtgtttaag tgccacgctt       840
     gcggaaagcc cggacacaag cgcgtgaatt gtccagaaaa cgttaaaaat gaacgccctg       900
     catcgaaacc ggaaaaacac aagaagaaga gtaaagcgca cgtggcggaa tctggtggtg       960
     acgtggcctt catgacggtt gacggcgacc cacccggagg aaaatttcgt tggatattgg      1020
     acagtggcgc atccgagcac atggtaagcg acaaaagttt tttgcaaaat gtgcgcacgt      1080
     tggatacgcc tatcgtcatt aacgtcgcca agtctggagt gtcgctaacc agccgtgtta      1140
     ccggcgaaat gaaaatgatt gccaacgtgg aaggcaagca gctcacttgc acggttcaca      1200
     acgtgcttta tgtgccagga ttgtatgcaa atttgttctc cgtgaagcga gttgcagaac      1260
     gtaacatgga agtgacattt ggcaaggatg gtgcgcgaat cacacgtggt tccgaagtgg      1320
     tgtgcactgc gagtcggaaa ggccgactat acgaattgga cgtggatgta ccgaagattg      1380
     agtctgccat ggtcgctgat ccagagagta agttgacgtt gtggcatcga aggtacggcc      1440
     acattgggaa tactggattg gtgaagctcg tccgaagtgg catggtcgaa ggcatcgatg      1500
     tcggcggaaa tttgaaaccg gatgcaggtg tttgcgaacc gtgcatgatg gggaagcaag      1560
     caaggcaaac gttcgaagaa gcagttaaac ctcgttcttc gcgtccattg gaactgatcc      1620
     acactgacgt atgcggtccg ttcacaccag cctcttggga cggccagaag attttcgtca      1680
     gtttcatcga cgacttcaca cactttacgg cggtgtatgc gttgaaatcg aagagcgatg      1740
     tactcgacgc ttttcgaaaa tatgctgcga tggccaccgt gcattttgga aatcgaatcg      1800
     cccggttgag gagcgacaac ggcggtgagt acattaatgc caactttata aagtactgtg      1860
     aagacgcagg aatcgtaatg gagccaaccg tgccgtacac gccccagcaa aacggcgtcg      1920
     cagaacggat gaacaggacc atcatggaac gagcgcgatc aatgctggac gatgcaggat      1980
     tcaaacggtc tatgtggagc gaggcggttc tgaccgcagt acacttaatc aaccggagtc      2040
     ctactgcagc cttggacgag aataaaacgc catacgagat gtggttcggg cacaagccaa      2100
     atgtgtccgg actgcgtgtc ttcggaagca aggcatattg tcacgtgccc aaggagaagc      2160
     ggacaaagct tgatgcgaag agtcaagtgt gttacttggt tggctacgga atcaacggat      2220
     atcgtgtgtg ggaccccgtg cgaaggaaga tcgtcatcgc tcgggacgtg gtcatcgatg      2280
     aattgagggc caaacgtcgg gtggaagttt atactaacga ccacttggtg tccgaccggc      2340
     cggtaacttt ggatgaagaa ccggaacagc gaaatgaagc aagccgtgat caaaattctg      2400
     agccagcgat tgacgaatcc gaagatgaag ctgctggtgg ctgtgacaca tcgattgaag      2460
     agtttggaag tgccgaagac gatgaagttc cagtacggcg gagcgggaga ctccgtaaac      2520
     aacctgctcg tttttccgat tatgaagtat gcattgcttt tgcgttgaat gcggaaaact      2580
     acgttgaagc tttgccagac gacatcaacg agcttcgaaa gcgtgacgat tggccagaat      2640
     ggaagcgtgc aatcgacgac gaaatgcgtg cgctggagaa gaataacacg tgggacatcg      2700
     tagaccttcc agctggtgct cgaccggttc cctgcaagtg ggtattcaaa attaaatata      2760
     acgataatgg ttcgatcgac aggcataagg caaggctcgt ggccaaaggg tgttctcaac      2820
     gccaaggcta cgattaccag gaaacatatg ctccagtggt tcgtatgaca accgtcagga      2880
     ccctgctatc ggtggcggtg cagagaaatc tccatttgca ccagatggat gtgcgcacag      2940
     cgttccttaa tgggaagcta tcggaaaccg tgtacatgcg acaaccacca ggatttgaga      3000
     gggggaacaa ggtgtgcaaa ttaaacaaat ccttgtacgg cctgaagcag gcaccacgaa      3060
     gttggaacga gcgtttcaat agcttcatcc tgaagctcgg gtttcagcgc tcacaatacg      3120
     acagctgcct gtacacgaga aaggtcaacg gtgtatggat gtaccttgtc ctgtacgtcg      3180
     acgacatcgt tttggcttca agttccctgg aagaaattcg aaacattaag caacgtttgg      3240
     caaacgagtt cgagatggac gacatgcagg agatgaaaaa cttcctgggc atgcggattc      3300
     agtacaacat ggaaaaaggt acgttgttgt tgaatcaaac taaatacatt tctgctctgt      3360
     tgaagcgttt cggcatggac ggctgtaagc cggcgtcaac tcctttggac gctaatctga      3420
     agttggagag aaaaaaagat ggcgacgaag cgacccaata cccttaccgg gagctagtag      3480
     gttgtttgac ctatttgatg ctntcaactc gtcccgatat tagcatcgcg gtgaacacca      3540
     tgagtcggtt ccaaagtggt gcaaccgatg tgcattggag ccatttgaaa cgtgtgttgc      3600
     ggtatctcca aggtaccaag cacctttcat tggagtatcg acgtgacgct tgtgccgatc      3660
     cactcattgg atttgcagac gctgattggg gtagcgacat ggacgaccgt cgctcaacaa      3720
     gtggttatgt gttccaagtc tatggtaaca ctgtgtcgtg gacaacacgg aaacaggcaa      3780
     cgatctcttt gtcatcgaca gaggcggaat atgtatccct gagccaatca tcgtgcgaag      3840
     caatttggtt gcgaaatctg ctcaccgaat ttggagtcac catgacaaat cctttggtga      3900
     tttacgagga caaccagtcc tgcatacaca tcgccgaaga gcctcgcgac cagaaacgga      3960
     tgaagcatct ggacatccgt tacaacttca tcagagaatg tgtccagaac aacgtcatca      4020
     atgtgaagta catcccgact ggagaccaac tggctgatgt cttcacgaag ggcctacctg      4080
     ctgctgcttt cctgaagcat cgatccacac tgggtctaag agggggtgtt agaaactaga      4140
     attagtagac cagttttgaa ta                                               4162
//
ID   Copia-63_AA-LTR repbase;    DNA;    INV; 115 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-63_AA_;
KW   Copia-63_AA-I; Copia-63_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-115
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2601-2601 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 115 BP; 30 A; 27 C; 15 G; 43 T; 0 other;
     tgctctggca gtaggccatg aaaatttgaa ttgtactata tataccaccc gtgtacttca        60
     actctttctc tttctccaat aaaccttgta ctagttaaca tcgtgtttct tatca            115
//
ID   Copia-64_AA-I repbase;    DNA;    INV; 4062 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-64_AA_;
KW   Copia-64_AA-LTR; Copia-64_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4062
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2602-2602 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1498-1995] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..4062
FT                 /product="Copia-64_AA-I_1p"
FT                 /translation="MTSLEKLGVNRLNGSNYSSWKFKVELLLVREDLWEYV
FT                 TGTCPVELETNAAVVAAWKKGDQKARATIGLLVDDSQRKLIQDTTTSKEAW
FT                 ESLRRNFERTTLTSKVSILKKLCDMRYTDDENIEKHITEMQDLFEKLSVAG
FT                 QVLDANLQVAMVLRSMPNSFNPLTTALESRSDADLTFDLVKTKLIDEAAKR
FT                 SCSGTEQSVLKAGTRKPIICHHCQKVGHKQKDCRSLAQSREAEPKKNELKQ
FT                 NGRSNKAKVVRSSPDEYAFMTKVGGRSDSWVVDSGATSHMAASKNFFESLD
FT                 ETITDDVVLANGIKTKSAGKGVCRIQCAGPDGSVNTMTLNNTLFVPDLEAN
FT                 LFSVRSATQRGATVVFDDVGCRITKDEKVVAVGNVSAGLYNLQIVHNAQVA
FT                 RSASHSENCQHAWHRMFGHRDPEAVGDLEKKNLATGIKIVNCGVKAICECC
FT                 LEGKFSRLPFPKKSKKKTKQPLDLVHTDLCGPMNTPTPGGCRYFMAITDDF
FT                 TRYSFVYFMRRKSEATEYIKQYVREMKTTFGRPPKIIRSDQGGEFQNRELA
FT                 EFCRQEGIRQQFSTSHTPQQNGVSERKNRSLVEMGRCLLLDAKMPKKYWAE
FT                 AINTACHLQNLLPSSAVSKTPFELWTSEKPDVSHLRLFGSQAYVWTPNEKR
FT                 SKLDPKSMKMTFVGYSQQHKGYRFLDLASNKLVVSRDARFIPAEDVCKNES
FT                 TDEGVVFYPFKSVAKKSEEVDHPIVEVEEEHPRAESESSEDTDFEGFDEST
FT                 FCGEDDYDTAIEVEAEEEVHDVRRSNRSNIGVPPVRYSEATRLASSQQDEP
FT                 RTYEEAMRSQERHEWKKAMDDEFASLQENSTWEISKMPANRKAIGCKWIYK
FT                 KKLDESGQVIRYKARLVAQGYSQKFGVDYDEVFAPVAKYTTLRTLLSVATR
FT                 RSLQVKHIDVKSAYLHGDLTETIYMKQPKGYQTGSQEEVCLLKRSLYGLKQ
FT                 AGRIWNQKISDKLEQLGYKQSEADPCLYIRKVDGRMSFVLLYVDDMLVATQ
FT                 DNDEYERVYRYLSKNFKLTSLGDVTNYLGIQVERTSSGDFLLNQSAYIRKI
FT                 AERFNMVEAKSSKIPMDPGYPNVQQKEEETMPNGERYRSLVGALLYVAVCT
FT                 RPDIAIAASILGRKVSKPSEADWVEAKRTLRYLTSTADLKLQLGGAGGLEG
FT                 FVDADWAGDKVDRKSNSGYVFKLGNGSISWAARKQQCVSLSSTEAEYVALS
FT                 EASQELLWLMKLMYDVGEDVVKPVVMNEDNQSCIAMLTSTGGSRRTKHIDT
FT                 RFNFVKELMSTGVMEVRYCPTESMIADISTKPLARVKLDRFRTPIGLKFFD
FT                 VEEE"
XX
SQ   Sequence 4062 BP; 1154 A; 905 C; 1115 G; 888 T; 0 other;
     ataggttatg ggtctccata gcaaccagcc aaacaaagtg aaaaaaaatt ttttcttcgt        60
     tgtgcgtaag ttagtcgcgt tcgggagttt ttcgccattt tttcgaggct aaggatgacg       120
     tcgctggaaa aattgggcgt aaaccgattg aacggaagca actactccag ctggaaattc       180
     aaggtcgagc tactactggt tcgagaagat ctctgggagt acgtaaccgg aacctgccca       240
     gtagaattgg aaacgaacgc agcagtggta gcagcatgga agaaaggtga tcagaaggcc       300
     agagccacaa ttggtcttct ggttgacgac agccaacgga agctgatcca ggacacaacc       360
     acgtcgaagg aagcctggga gagcctgagg agaaatttcg agcgcacaac gctgacgtcg       420
     aaggtttcca tcctcaagaa actgtgcgat atgcggtata ctgatgacga gaacatcgag       480
     aagcacatca cggaaatgca agatttgttc gagaagcttt cggtggcggg tcaggtacta       540
     gacgcaaatt tgcaagttgc gatggtcctc agaagcatgc cgaattcctt caacccatta       600
     acaacggctc tggaaagtcg ttcggacgcc gatctaacgt ttgatcttgt aaagacaaag       660
     ttaatcgacg aagcggccaa gcgaagctgt tcgggaacag agcaatcggt gttgaaggca       720
     ggtacgagga aaccaataat ttgccatcat tgccagaagg ttggacacaa gcagaaggac       780
     tgtcgttcgc tggcgcagag ccgggaagca gaaccgaaga aaaatgaact gaagcagaat       840
     gggagaagca acaaagccaa ggtggttcga agcagtcccg acgagtacgc tttcatgaca       900
     aaggtaggtg gtagatcaga ttcatgggtg gttgattccg gagctacctc gcacatggct       960
     gctagcaaga actttttcga atcgttggac gagaccatca ccgatgacgt cgtgctggcg      1020
     aacgggatca agacgaaatc tgctggcaag ggcgtgtgtc gtattcagtg cgctggaccg      1080
     gacgggtctg tcaataccat gactctcaac aacacgctat tcgttcctga tcttgaagca      1140
     aatctattct ctgttagatc cgctacgcaa agaggagcaa ccgtcgtttt cgatgacgta      1200
     ggatgtcgca ttacaaagga cgagaaggta gtagcagttg gcaatgtctc tgccggattg      1260
     tacaatcttc aaatagttca caatgcacaa gtggcacgga gcgcaagtca ttcggagaat      1320
     tgccaacacg cgtggcatag gatgttcggc cacagagatc ctgaagcagt cggtgacctg      1380
     gagaaaaaga atctggcaac tggtatcaaa attgtgaact gtggagtcaa ggccatctgt      1440
     gaatgctgtt tggagggtaa gttttccaga ttacctttcc cgaagaagtc caagaagaag      1500
     acgaagcaac ctctggattt ggtgcacaca gatctgtgcg gaccgatgaa cacaccaact      1560
     ccaggtgggt gtcgatattt catggcaatc acggacgact tcacacggta ttcttttgtg      1620
     tattttatgc gacggaaatc agaagcgacc gaatacatca agcagtacgt gcgagagatg      1680
     aagaccacgt tcggcagacc gccgaaaata attcgatcgg accagggtgg tgaatttcaa      1740
     aatcgagaac tggctgagtt ttgtcgtcaa gagggcattc gacagcagtt cagcaccagc      1800
     catacgccgc agcagaacgg agtatcggaa aggaagaacc ggtcattagt cgagatggga      1860
     aggtgcctgt tgcttgatgc caagatgccg aaaaagtatt gggctgaagc tatcaacaca      1920
     gcgtgccacc tccagaatct tctaccgtca agtgctgttt caaagactcc gttcgaattg      1980
     tggacatcag agaagcctga cgttagtcat ctgcggttgt tcgggtcgca agcctatgtg      2040
     tggactccga atgagaagcg ttccaagctg gacccaaaat cgatgaaaat gacgttcgtt      2100
     ggttactcgc agcaacataa gggatatcgt ttcctggatc tagcgtcgaa caagctcgtc      2160
     gtgtctcgtg atgccaggtt cattccagcg gaagatgttt gcaaaaatga aagtactgat      2220
     gaaggcgtcg tgttttatcc attcaagtca gtggccaaga agtctgaaga agtcgatcat      2280
     cctatcgttg aggttgagga ggagcatcca cgggccgaaa gcgaatcatc cgaagatact      2340
     gatttcgaag gtttcgatga atcaacgttt tgcggagagg acgattacga cactgcgatc      2400
     gaagtcgagg ccgaagaaga agttcatgat gtgcggcgat ccaaccgttc caacattggt      2460
     gttccaccag tgcggtatag tgaagctacc cggttggctt cttcccagca agatgaacca      2520
     cgtacgtatg aagaagcaat gcgaagccaa gagcgccacg aatggaagaa agccatggac      2580
     gatgaatttg catcccttca ggagaattcg acatgggaaa tctcgaagat gcccgcaaat      2640
     agaaaagcaa taggatgtaa atggatctac aaaaagaagc tcgatgaatc cggtcaggta      2700
     atccgctaca aggcacggct tgtagcacag ggctatagtc agaaatttgg tgtggactat      2760
     gacgaggtgt ttgcacctgt ggcgaaatac actacccttc gcaccctact atcagtggct      2820
     actcgtcgat ccctgcaagt caagcacatc gatgtcaagt ctgcatattt acacggggac      2880
     ctcacggaga ccatatatat gaagcaaccc aagggctacc aaactggctc ccaggaggag      2940
     gtgtgtctgc tgaagcgcag cctctacggg ctgaaacaag cggggcgtat ctggaaccaa      3000
     aagatatcgg acaaactgga gcagctagga tacaagcaat ccgaggcaga tccctgtctc      3060
     tacatccgga aggtcgatgg aagaatgtca ttcgttttac tgtatgtcga cgatatgctc      3120
     gtggcaactc aggacaacga tgaatacgag cgggtctacc gctacctatc gaaaaatttc      3180
     aagctcacga gtctaggaga tgttaccaat tacctgggca ttcaagtgga gagaacaagt      3240
     tctggtgatt tccttttgaa tcaatcggct tacatccgta agattgccga gaggttcaac      3300
     atggtcgaag cgaagtcatc aaaaataccc atggaccctg ggtatccgaa cgtgcagcaa      3360
     aaggaggagg aaactatgcc aaacggtgag cgctaccgta gccttgttgg cgctttactg      3420
     tacgttgcgg tatgcaccag gccagatatt gcgattgcgg cgtccatcct ggggcgcaag      3480
     gtaagcaagc cttctgaagc cgattgggtc gaagcaaaga gaaccctgcg gtaccttaca      3540
     tcgacggctg atctgaagct gcagctcggc ggagctggtg gtctagaagg tttcgtcgat      3600
     gccgactggg ccggtgacaa ggttgaccga aaatccaact ctgggtacgt attcaagctc      3660
     ggaaacggat ccatcagctg ggccgcaagg aagcaacaat gcgtcagctt gtcttcaacg      3720
     gaagcggagt acgtagccct ctcggaggct agtcaggaac ttctctggtt gatgaagctg      3780
     atgtacgatg tcggggaaga tgtcgttaaa cccgtggtga tgaacgaaga caatcaaagt      3840
     tgcatcgcca tgctaacgtc cacaggagga agccgacgaa caaagcatat cgatactcga      3900
     ttcaacttcg tgaaggaatt gatgtcaacc ggcgtcatgg aagttcgcta ttgtccaaca      3960
     gaatcgatga tcgcggacat ttcgacgaaa ccactggcgc gggtcaaact cgatcgattc      4020
     cggaccccga ttggtttgaa gttcttcgac gttgaggagg ag                         4062
//
ID   Copia-64_AA-LTR repbase;    DNA;    INV; 149 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-64_AA_;
KW   Copia-64_AA-I; Copia-64_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-149
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2603-2603 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 149 BP; 45 A; 32 C; 27 G; 45 T; 0 other;
     tgaagcgatg ccgatgctta gcaacctgaa gaacttgaaa gctatattag atactaagta        60
     agccttgatt ttctacatga ataaaacgtt ataagttgtt agtcactcaa actggctgga       120
     cgcgttttac tctgctccat accctctca                                         149
//
ID   Copia-65_AA-I repbase;    DNA;    INV; 4777 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-65_AA_;
KW   Copia-65_AA-LTR; Copia-65_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4777
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2604-2604 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1451-1975] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..2716
FT                 /product="Copia-65_AA-I_1p"
FT                 /translation="MSRQQQNRPAGSGSGLPAAEGEAGGQAAGRPAVGGSA
FT                 AGSGRINAVALPIIEKLKGRENFNTWAFAMKMTLIREGTWYAVAPPEGHQV
FT                 DEEVSLRALATICLSLETTNYSLVQDAKDAKEAWEKLRNAFQDNGLTRKIG
FT                 LLRKLTSIRSDDCGSVESYVDELMSTAHKLAGIGFKVDDSRLAALLLMGLP
FT                 EHYEPMIMGLEASGTALTSDAVKAKILQDVKLQNGPKNGSADGALYSNQAR
FT                 RRRGSNGGTTKKDDTCHNCKKRGHFAAKCPQKQNPQRTSGKALCSVFAMGE
FT                 VSGEEWYFDSGATCHMSRSGNGFVEQQPMAHQVGTANNGSMMSVAKGLVKL
FT                 DLDEGPIEVQEVLQIPELATNLLSISRICQKGLTVIFDAESCEVRENDGNV
FT                 IASGTQVNGLYKLNRNNEQALLTPSASIWHKRLGHLNHRSLRRLVTMANGI
FT                 ELRNDVIPECIACIEGKHARNPFPSSVSRAEGLLDLVHSDLVGPIEVPSLG
FT                 GSRYVMTFIDNASRKVFLYFLERKSEAFGAYESFKSMAERQTGRKLKVLRT
FT                 DNGTEYVNESFRRSMAKDGIRHEKTCPYTPEQNGVAERMNRTLIEKARSML
FT                 NDSRLPKKFWAEAVSTAAYLVNRSPTRAIEITPEEAWSGKKPDLHHLRVFG
FT                 SLALVHVPKQKRKKFDAKSQKAIFVGYADGTKGYRLYDPVERDIRISRDVV
FT                 VVQEGEPQNLVELGEHQQQVQFMELYSFDNSIARHPIVEPRIGDDEVNEDE
FT                 IDRSASSDSDSSDPEFLDANNEPALPSQSNRPAGEQQGLRRSDRERRIPGK
FT                 YSDFVTYSSFSGEVVSPQPSTFSSNTSFDDPQSYEEALNGPDREHWIAAMR
FT                 EEIKALEENETSGSSRRNEGQLVKSSGTKRAWS"
XX
SQ   Sequence 4777 BP; 1358 A; 1036 C; 1290 G; 1088 T; 5 other;
     aaaggttatg ggcccaggct ggccatagtc agaagaaaag cgaaaaatta gtttggcgat        60
     gagcagacag cagcagaatc gtcctgctgg aagcggaagt ggcctgccgg ccgccgaggg       120
     cgaagctgga ggacaagccg ctggaagacc tgccgttgga ggatcagccg ctggaagtgg       180
     acggatcaac gcggttgctc tacccatcat cgagaagctg aaggggcgtg aaaatttcaa       240
     cacgtgggcg ttcgcgatga aaatgacgct cattcgcgaa ggcacctggt acgcggtagc       300
     gccaccggaa ggacaccaag tcgacgaaga ggttagtttg cgagcgttgg ccacaatttg       360
     cttgagcctg gagacgacca attacagtct ggtccaggac gcaaaggacg ccaaggaggc       420
     ctgggagaaa ctgcggaacg ctttccaaga caacggtttg accaggaaaa tcggcctact       480
     gaggaagctc acttcnattc gttcggatga ctgcggcagc gtggaatcgt atgtcgacga       540
     gctgatgtct acggcacaca aacttgcggg aatcggcttc aaggttgacg actcacggct       600
     ggctgcgttg ttactcatgg gacttccgga gcattatgaa cccatgatta tgggactcga       660
     ggcatcgggt actgcgttga cgtcggacgc ggtaaaggca aaaattttgc aagacgtgaa       720
     gctgcaaaat gggccaaaga atggcagcgc agatggtgcg ttgtattcca accaggctag       780
     gagacgacga ggcagcaacg gtggcacgac gaagaaggac gacacgtgcc acaactgtaa       840
     gaagcggggg cattttgccg cgaaatgtcc acaaaagcaa aaccctcaga gaacgtctgg       900
     caaagctttg tgcagcgttt ttgcgatggg tgaggtaagt ggtgaagaat ggtacttcga       960
     ctctggtgcc acgtgccaca tgtctcgtag tggcaatgga ttcgttgagc aacaacctat      1020
     ggcgcaccag gtaggcacgg caaacaacgg cagcatgatg tcagtcgcga aaggattggt      1080
     caagctagat ctcgatgaag gtcccatcga agtgcaggaa gtgttgcaga ttccggaact      1140
     ggctaccaat ctcctctcaa ttagcaggat ttgccagaag ggactgacgg ttatcttcga      1200
     cgcagagagc tgtgaagtcc gcgagaatga tggaaacgtt attgcatccg gtacgcaagt      1260
     aaatggactg tataagctca accggaacaa cgaacaagcg ctactgactc cgagcgcttc      1320
     catctggcac aagcggctcg gtcatctcaa tcatcgaagc ttacggaggc tcgtgacgat      1380
     ggcaaacggg attgaactgc ggaatgacgt catcccagag tgcatcgctt gtatcgaggg      1440
     taagcatgca cgtaatcctt ttccttccag tgtctcgcga gccgaaggac tactggattt      1500
     agttcattcg gacctggttg gacccatcga agttccatct ctcggtggca gccgttatgt      1560
     gatgactttt atcgacaatg cgagtcgaaa agtgttcctc tatttcctgg aacgaaaaag      1620
     tgaagctttt ggtgcatacg agagtttcaa gtctatggcc gagcgtcaaa caggaaggaa      1680
     gttaaaggta ctgaggacgg ataacggtac cgaatacgtc aacgaatcct tcagaagaag      1740
     tatggcaaag gatggaatac gccacgagaa gacttgtccg tatacaccgg agcaaaatgg      1800
     tgtggcggaa aggatgaatc ggacactcat cgagaaagcc agaagcatgc tgaacgattc      1860
     gcgcctgccg aagaaatttt gggccgaggc ggtttctaca gcagcgtacc tcgtcaacag      1920
     aagtccaacg agagcgatcg aaataacacc agaagaagct tggagcggta agaagcccga      1980
     cttacatcat ttgagggttt ttggatcgct agcccttgtc cacgtgccga aacagaagag      2040
     gaagaagttc gacgccaaat cccagaaagc gattttcgtg ggatatgccg acggtaccaa      2100
     ggggtatcga ttatacgatc cggtcgagcg tgatatccgg atcagtcgtg acgtagttgt      2160
     ggttcaggaa ggcgaaccgc aaaatctggt tgaacttggc gagcatcagc agcaggtaca      2220
     gttcatggag ctgtattcat tcgataattc gattgcgagg catccgattg tggaaccgag      2280
     gatcggtgac gatgaggtca acgaggacga aatcgaccga tcggcatcat ccgacagcga      2340
     ttcaagcgat cctgagtttt tggacgcaaa caacgagcct gcgctcccgt cgcaatctaa      2400
     taggccagct ggtgagcagc aagggcttag gcgcagcgac cgggagcgcc gaattccagg      2460
     caagtattcc gatttcgtta cgtatagttc gttttctggc gaagttgttt ccccacagcc      2520
     ttcaacattt tcttcaaaca cgtcgtttga tgaccctcaa agctacgagg aggcgctcaa      2580
     cgggccggat cgagagcatt ggattgcggc catgcgtgag gaaatcaagg cactggagga      2640
     aaacgaaacg agcgggtctt caagacgaaa cgagggccaa ctggtgaaat cgagcggtac      2700
     aaagcgcgct tggtcgtgaa agggtgctcg caacggccag gaatcgacta cgacgaagtg      2760
     tactccccgg tggtacgata ttccactatt cgatatcttc tggcgttggc ggtaaaacac      2820
     gacctcgaca tagagcagat ggatgcagtt actgcgttcc ttcaaggcga gttgtcggac      2880
     gaggtcatct tcatggagct accncaagga tttggcggca catcgaagca agtttgtcga      2940
     ttgcggaagg ccatgtacgg gctgaaacag gcgagtcggg tgcggaatag tcagctagac      3000
     aaggtgctga aggaattcgg tctggagcag tcgaatgttg acccatgcct gtacttccga      3060
     atcgacggtg agaaaatcaa tacagagtca gaattagggc gaatgtgaac actaatacat      3120
     tgtcagtaaa atcggtttga agttcagcgg atataatttc aattctatat tatgtttccg      3180
     atcgatttaa tcgcatgatg catttttgta tgattcatta caatattatt tttgtaacaa      3240
     accatttgat ttattttcat attatgaaca acatgtttaa ataaataaaa aagcatcatg      3300
     cgccaggacg aggtcaaaag gcgcaatcgc ggctgtcaaa ctgaaggaga cgaaaaaccg      3360
     aggggcgcaa ctatcctcaa ttttgatgaa tggcgttgtt atatatatat atatatatat      3420
     atatatgtat atatatatat atatatatat atatatatat cgatatatcg accttctgca      3480
     cactcagttt taaatgcgcc ctgctgccac actcaatcgc aaatgcgccc ggttatcgca      3540
     aagggggaag atgggcgaaa ttgacatcag agttcgtatc gaaagagaat atcaaatgcg      3600
     cctttatgtt tttctcactt atttcgtgaa aaacgttatt tttaagaaac agttgtgcat      3660
     tatatgattg taatttatca aataaactgt taggtgaata aaactcaatt tgtttacatt      3720
     tgtcagttag gccgtaaatc tggtactgta ttgaaatgat tttcgtcacc atttacgtag      3780
     atgacttcct gatcttcacc aatgatgcaa agctgacgaa gaagctcaaa tcgttccttc      3840
     gcaatcgctt caaaatgaag gaccttggcg aagcgacgtt ctgccttgga ttgaggatca      3900
     cgcgagatcg aaagcatgga aacctgtngg tagatcagga gcactacatc gacagcatat      3960
     tgcaacggtt caacttggcg aactgtaatc cagtctctac accagcggag gcgagtatca      4020
     gactggacaa gtcgatgtca ccatcaaagc cggacgaaat gcgtgaaatg aaggaggttc      4080
     catttcaaga ggcagtgngc tgtctcactt atctggcgca agcaacgcgg ccggacatca      4140
     gttttgcggt caatcaagtc agccaattca acgcgaatcc agnacgtggc cattggaatg      4200
     ctgtgaagcg catcatgcgg tacctgcgag gtacgaaatc aagccggcta acctactcga      4260
     aggaatttgg ctcaaatttg gttggctaca ccgatgctga ttggggagga gaaccggact      4320
     ctaggaaatc caccactgga tacgtgttca ctttcatggg aggagctgtg tcgtggaatg      4380
     tgaaacggca accaacagta gctttgtcct cgtgtgaagc ggaatacatc gcactttctc      4440
     gcacaatcca ggaagcactt tggtggcatc acttccagtc acaaatattc ggtgttcagg      4500
     gaatactaat ccggtgtgac aatcaatcag ccatctgtat cgcacgcaat aaaggataca      4560
     atcctcggac gaagcacctg gatatccggt atcactttat ccgagacgtg ttagaccaag      4620
     gagtggtaca gctgggatac gtgagcacaa agcagcaacc tgcagatgga ttcacgaaaa      4680
     ctctggcgaa tcagaagcta gaagaaaata aaaagttaat tggattaatt gcttagggag      4740
     gagtgttgaa atcatagtag acattggaat aagcaaa                               4777
//
ID   Copia-65_AA-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-65_AA_;
KW   Copia-65_AA-I; Copia-65_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-148
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2605-2605 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 148 BP; 47 A; 29 C; 28 G; 44 T; 0 other;
     tgcaaccaat gaacttatgt actagctttg ttatacataa tgttaccata ggaacgccta        60
     acagcaagtg gtgctgaagg cagttgaact gaaataaatt ttcattagtc tttagtcagc       120
     gaaccgaacc ggacgttttt actctaca                                          148
//
ID   Copia-66_AA-I repbase;    DNA;    INV; 3846 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-66_AA_;
KW   Copia-66_AA-LTR; Copia-66_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3846
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2606-2606 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1410-1835] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(77..1408,1410..3671)
FT                 /product="Copia-66_AA-I_1p"
FT                 /translation="MEKSFAKLNGTNYDNWSFRMKLLLMKEGTWATVKDPK
FT                 PDPVTAAWTSKDEQALATIGLAVDDNQLVHIRKAKSAREAWETLEKFHVKR
FT                 TLSTKVSVMRRICRMRLEKNGDMEAHVSALTELFEKLNGLQPEKVLDDQWL
FT                 VSILFSSLPEEYETLVTALEARPEEDLTLNLVKGKLIDEWQKRERRINSDD
FT                 GSEAALQVGPKTNFDRCFFCKKSGHLKVNCEKFKAWKAEKKKFPKATRQQK
FT                 VNSVVQQDDEDENWAFCTGNALRREDQWILDSGATCHICNRREFFDHLDES
FT                 VLEAVWVANGMKAQSKGRGTGKLAVLDGEGNRRVITLESVLYVPEMKSNLL
FT                 SVKRLATKGFVVTFDEEGAKISRSGTIGAVAEVERGLFVIKQYRESASLVT
FT                 SAGECVHAWHRRFGHRDCDAVMKLKNLVQGVNVKGCNCKEICEACIRGKMR
FT                 RYFLTFVDDYSKYTVVYILRKKSEAFEKLQEYVEMARTQFNKIPKILRSDN
FT                 GGEYTGKHMRAYLKQNGIAGQFTAPYSPQQNGVAERKNRYLVEMARCMLID
FT                 ANMDHRFWGEAVVTANYLQNRLPSRSIPGTPYERWFGKKPNLGHIQRFGMD
FT                 VFCHVPSEKRGKLDSKAIKLKFVGYSEVSKAYRLLDPRSGKVTISRDVKFL
FT                 ESSQPVDENEVEDLVVVPPINNPLVSTEERDESGNPDIEESDDDDVWNDPE
FT                 NIEELPNEDEVVVRRSARMNQGIPPERYVCMAGPLFQEEPKSFKEATSCSL
FT                 SRKWKEAMEEELNSMNSNETWDLVDLPAGRRAIGCKWVYKLKQGKDGEVNR
FT                 FKARLVAQGFSQRYGTDYDEVFAPVVRQATFRTLMSVAAKRRMVVKQYDVK
FT                 TAFLNGNLEEEIFMRQPPGYAVPDMENKVCRLKKSIYGLKQAARAWNHRLN
FT                 EVLEKAGFKRCESDPCLYSRQVKGKWCYILVYVDDLIVASEEERIIKPLEA
FT                 VLRQNFEISSLGDVQWYLGIEVERDEAGDFYLSQRRYIRDVVASAGLEDAK
FT                 PSNIPLDTGYGKQTYNDNILPDNKQYQKLVGQLLYIAVNTRPDIAAAISIM
FT                 SRKVSCPTQQDWTELKRIVRYLKGTVELKLRLSKHDDHSGLVGFADADWAE
FT                 NREDRKSNSGFIFKFNGGTISWTCRKQTCVSLSTAEAEFVALSEASQEALW
FT                 LKRLLTDLGENLPNVTMNEDNQSCLKMLDSEKFSNRTKH"
XX
SQ   Sequence 3846 BP; 1131 A; 796 C; 1068 G; 849 T; 2 other;
     ataggttatg ggccgcacct gaatcgagat cggtgaagtt tgaagatttt ttcaacagaa        60
     gagcagaaac acgaagatgg aaaagtcgtt tgcgaagttg aacgggacca attacgacaa       120
     ctggagtttt cgcatgaagt tactcttgat gaaggaagga acatgggcta ccgtaaagga       180
     tccgaaaccc gatccggtaa ctgctgcctg gacgtcgaag gatgaacaag cgttggcgac       240
     cattggactg gccgtggacg acaatcaact ggttcacatt aggaaggcca aatccgctcg       300
     cgaagcttgg gaaacactcg agaagttcca tgtcaagagg acactcagca ccaaggtatc       360
     cgttatgcga agaatttgtc gaatgcgtct ggagaagaac ggggacatgg aagcccacgt       420
     ctcggctctg acggagctgt tcgagaagct gaatggtctg caacccgaaa aagttctcga       480
     tgatcagtgg ctggtatcca tcctgtttag cagcctgcca gaagaatacg aaactcttgt       540
     gaccgcgctg gaggcaaggc cagaggaaga tcttacgttg aacctagtga aggggaagct       600
     gatcgatgaa tggcaaaagc gggagcgtcg catcaattcg gacgatggat ctgaagctgc       660
     gttgcaagtt ggacccaaga cgaatttcga taggtgtttc ttttgcaaga agtcgggcca       720
     cttgaaggta aattgtgaga aattcaaggc atggaaggca gagaagaaga aatttccgaa       780
     agcaaccagg caacagaaag tcaacagtgt ggtgcagcaa gatgacgagg acgaaaattg       840
     ggcgttctgt accggaaatg cgttgaggcg tgaggaccaa tggatcctgg attccggagc       900
     aacgtgccac atctgtaatc gtcgcgaatt ctttgaccac ctggacgagt cagttctgga       960
     agctgtttgg gtcgctaatg gcatgaaggc acaatcaaaa ggtcgcggta ctggtaagtt      1020
     agcagtgctc gatggtgaag gcaaccgccg agtgataacc ctggaatcgg tgctgtatgt      1080
     tcctgagatg aaatccaacc tcctctcggt caagcggttg gcaacgaaag gctttgtcgt      1140
     gacgtttgat gaagaaggcg ccaaaatttc cagaagcggg acgattggtg ctgtagccga      1200
     ggtcgaaaga ggtttgttcg tgatcaagca ataccgggaa tctgcatctt tggtgacgtc      1260
     ggctggtgag tgcgtccacg cttggcatcg gcgttttggc catagagatt gtgatgctgt      1320
     catgaagttg aagaaccttg ttcaaggagt taacgtcaaa gggtgcaatt gcaaggaaat      1380
     ttgcgaggca tgtattcgag gtaagatgna gacgatattt cttgacattt gtggacgact      1440
     acagcaaata tacagtcgtt tacatactac ggaagaaatc ggaagcattt gagaagctgc      1500
     aagaatacgt agagatggcc agaactcagt tcaacaagat accgaaaatc cttcgatccg      1560
     acaatggagg tgagtacacc ggcaagcata tgagagcata tctgaagcaa aacgggattg      1620
     ctggccaatt cacggcgccg tacagtccgc aacagaatgg cgttgccgag cgcaaaaaca      1680
     ggtatttggt tgaaatggcc cgctgtatgc tgatagacgc caacatggat catcgattct      1740
     ggggtgaagc ggtggtgaca gcaaactacc tgcaaaaccg actaccttca cgatcaatcc      1800
     ctggaacacc gtacgaacga tggttcggaa agaaacctaa tctggggcac attcaacgat      1860
     ttggaatgga tgtgttttgt cacgttccta gtgagaaacg gggtaagttg gacagcaaag      1920
     caatcaagct caagtttgtt ggttatagcg aagtttcgaa agcgtatcgt ttgctggatc      1980
     caagaagtgg aaaagtcact attagtcgcg atgtcaagtt cctggagagc agtcagcctg      2040
     tggatgaaaa tgaagtggaa gatctcgttg tggttcctcc aatcaataat cccctggtga      2100
     gcactgagga acgtgatgaa tctggcaatc ctgacattga agagtccgac gatgatgacg      2160
     tgtggaacga tccggaaaac attgaagagc tacccaatga agatgaagtt gttgtccgaa      2220
     gatctgcaag gatgaatcaa ggtataccac cggaaaggta cgtgtgtatg gctggtccgc      2280
     tgtttcagga ggagccgaaa tctttcaagg aagcaacatc ctgttccttg agccgcaaat      2340
     ggaaagaggc gatggaagag gaactcaatt cgatgaactc caacgaaaca tgggacctgg      2400
     tggatctgcc tgccggacgg cgtgccattg gctgtaaatg ggtctacaag ctgaagcaag      2460
     gcaaggacgg tgaagtcaat cgtttcaagg caagattggt agctcaaggt tttagccaac      2520
     gatatggaac cgactacgac gaagtattcg cgccggtggt ccgtcaagca acattccgga      2580
     cactgatgtc agtagcggcg aagcgacgaa tggttgtcaa acagtacgat gtgaagacgg      2640
     cttttctgaa tggaaacctt gaggaggaga tttttatgcg gcagcctccc ggttatgcgg      2700
     ttcctgatat ggagaacaag gtttgccgat tgaagaaaag catatacggc ttgaaacagg      2760
     ctgcgcgagc ttggaaccac cgactcaatg aagtactcga gaaagctgga ttcaagcgtt      2820
     gtgaatcgga tccctgttta tacagcagac aggtgaaagg aaagtggtgc tatatcttag      2880
     tctacgtgga tgacctgatt gtcgcaagcg aggaagagcg gattatcaaa ccactggaag      2940
     cagtcctgcg acagaacttc gaaatcagta gcctcggtga tgttcagtgg tatctgggca      3000
     tcgaagtaga acgtgatgaa gcaggagatt tctacctcag tcaacggaga tacatcagag      3060
     atgtggttgc atcagccgga ctggaagatg ccaaaccgtc taacattccg ttggacactg      3120
     gatatggtaa acaaacttat aacgacaaca ttctcccgga caacaagcag tatcaaaagc      3180
     tagtaggcca actactgtac atcgcagtca acacccggcc tgatatagct gcagcgatct      3240
     ccatcatgag ccggaaagta tcctgtccca cccagcaaga ttggacggag ttaaaacgaa      3300
     tcgttcggta cctgaaggga accgtcgaat tgaagttaag gctgagcaaa catgatgacc      3360
     actcaggact agtcggattt gcggatgcgg actgggcaga aaaccgtgaa gatcgaaaat      3420
     caaatagtgg attcatcttc aaattcaacg gaggaacaat ctcttggacc tgtcgcaagc      3480
     agacatgtgt ttccctatcg acagctgaag cagaattcgt cgcgctctcg gaggcctcgc      3540
     aagaagccct gtggctgaaa cggttgctta cggatttagg agaaaatttg cccaacgtta      3600
     cgatgaacga agataatcaa agttgtctca agatgctgga ttcggagaaa ttcagtaaca      3660
     gaacgaagca tancgcaacc cggttccatt ttgccaaaga tttgaagcag actggagcga      3720
     tcaagtacaa ttattgtccg accgaactga tgctagccga tcttttgaca aaacccctct      3780
     caagaattcg agttgaaaaa ctacgacagc aatgcggact cgagaagcag cgttgaggag      3840
     gagtat                                                                 3846
//
ID   Copia-66_AA-LTR repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-66_AA_;
KW   Copia-66_AA-I; Copia-66_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-160
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2607-2607 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 160 BP; 44 A; 36 C; 28 G; 52 T; 0 other;
     tggagttgca acgcagctcc ctggagaatc taagcagtca ttgaagtttg acatgaatta        60
     atgttcaatt atgttacaat aaactcattc tcattccaac tgttccataa gatagatgtg       120
     tttcattact gttcctgtcc cgatcgatcc ctgactgcca                             160
//
ID   Copia-67_AA-I repbase;    DNA;    INV; 4108 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-67_AA_;
KW   Copia-67_AA-LTR; Copia-67_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4108
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2608-2608 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1504-2037] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..2382
FT                 /product="Copia-67_AA-I_1p"
FT                 /translation="MTEEEKHERFLLPLFDGTNFTAWKYRMRVLLEEHELI
FT                 ECVEAEAATLPELQDEAGDGNDVKAAKLTRRTKRAKKDKRCKSILVSRIHD
FT                 SQLEYVQEKTTPKEIWDALVRVFERKSIASRMHLKRQMLSLRLESGSLQEH
FT                 FLRFDRLVREYRGTGAVIEELDVICHLLLTLGPAYSTVVTALETMPEENLN
FT                 LEFVKCRLLDEEIKQRGGESLEFSSAKLEVAAFAGSKKKTEKKKMPLRCFG
FT                 CQEEGHKVSDCPKNKQKKSANVSKHQSKANLADRNEVVFVTTTVSDDRDDR
FT                 CSVQWFVDSGCSDHMAKDKELFDELVPLPKPVEIAVAKNGQSIVAHYSGTV
FT                 RLQSVVNGKCIPCTVTNVLYVPSLRFNLFSVVNVEKKGMRVVFGNGRVSIY
FT                 NGSEIVATGARRGKLYELDLFRIEDCDSGASAFACGRITKELELWHRRFGH
FT                 LNLKQLEQLISREMVDGLQPVKKCSDKSEVICEPCIIGKQTRKPFPARVGK
FT                 RSSRVLEVVHSDVCGPVSPIGRNGERFFVTFIDDWSHFVMIFPMKRKDEVF
FT                 DWFVHYEALVTAKFGTRISRFVCDNGGEYKNKAFQSFCSTKGIEIQWTVPY
FT                 TPELNGTSERMNRTIIERARAMLEGAKLEKTFWVQAVQTAAFVVNRSPTTA
FT                 IDPNKTPAELWEGKRPDVSRLRSFGCAVYVHVPQERRRKLDPKAWKGVFVG
FT                 YAAKGYLVWNPKDKSIVVARDVDFLEQQAFREEKAKKQNSVSVIRVGELAN
FT                 DTEEERSDVDSDAGSSDRGYNADDPVDD"
FT   CDS           2617..4086
FT                 /product="Copia-67_AA-I_2p"
FT                 /translation="MQEEMDSLARNETWTLAELPKGRNAVTCKWVFKLKQS
FT                 DDEEAPRYKARLVARGFTQKPGFDYSDTYSPVARMDTLRTVLALANHEGWT
FT                 VHQMDVKTAFLNGELSEEIYMRQPEGFEEQNGLVCRLNRSLYGLKQAARSW
FT                 NERFHKFVVRLGFVRSRNDLCLYCRGSGETQVILVIYVDDVLIASSSGKLV
FT                 GTVKKCLATEFEMTDVGEVKNFLGMRIERNIEEKTLRISQRRYLEHLLDRF
FT                 QMLDCRPIATPMENRLKLPKGDEAKRTSKPYRELVGCVMYVSLTSRPDLAV
FT                 AANYFSQFQACPNEIHWVHLRRVLRYIRGTLDYGLVYRGCDRGPVLEAFSD
FT                 ADWANDCTDRRSVSGAVFKVYGSTVSWSAKKQATVSLSSTEAELIALCAAA
FT                 CHGQWMVRILRDLGAKPITPITYYEDNQSTMSIATNPKDSGRLKHLDVKHF
FT                 FVRELLESNLIRVEYVPTSKQQADILTKSLPGPAFRKFREYLGLT"
XX
SQ   Sequence 4108 BP; 1045 A; 882 C; 1241 G; 936 T; 4 other;
     ggttacggtg cccagtaacg tttaccgcga gtggcaagtg aaattatgac ggaggaagag        60
     aagcacgaac ggttcctgct gccattgttc gacggaacaa actttacggc atggaagtat       120
     cgcatgcgcg tattgttgga ggagcacgaa ctcatcgagt gcgtggaggc ggaggctgct       180
     acgttgccgg agctgcagga tgaagcgggc gatggcaacg acgtcaaggc ggcaaagctg       240
     acgagacgga cgaaacgcgc gaagaaagat aaaaggtgca aatcgatact ggtctcccgg       300
     atacacgatt cccaattgga atacgtgcag gagaagacga cgcccaaaga gatttgggat       360
     gctctggtcc gcgtcttcga gcggaagagc atcgccagtc gtatgcactt aaaaagacaa       420
     atgctgtcgc tgcgactgga atccggaagc ctgcaggaac acttccttcg gtttgatcgc       480
     ctggtaaggg agtaccgagg aacgggcgct gtcatcgagg agctggacgt gatttgccac       540
     ctactgctca ccctcggtcc ggcctactcg accgtcgtga cggctctaga gacaatgccc       600
     gaggaaaatt tgaatctaga gttcgtcaaa tgtcgtcttt tggatgagga aataaagcag       660
     cgaggtggtg aaagtttgga attctcctct gctaagctgg aggtggcggc gtttgcagga       720
     tccaagaaga aaaccgagaa gaagaaaatg cctcttcggt gctttggctg ccaagaagaa       780
     gggcacaaag tgtcagactg tccgaagaat aagcagaaga aaagtgcgaa cgtgagtaaa       840
     catcagtcca aagcgaattt ggctgatcgt aatgaggttg tgtttgttac cacgacggtg       900
     agtgatgatc gcgacgatcg gtgttcggtg caatggtttg tggactccgg ctgctcggat       960
     catatggcga aggacaagga gttattcgac gagcttgtac cgctgccaaa gccggtcgaa      1020
     atcgcggtgg ccaaaaacgg acagtcaatc gtagcgcact actcggggac ggtgagattg      1080
     caatccgtcg ttaatggaaa gtgcattcca tgtacagtga cgaacgtgct atacgtccca      1140
     tcgctgcgtt tcaatctttt ctcggtggtg aatgtggaga agaaaggcat gcgcgttgtg      1200
     ttcgggaatg gacgagtcag tatttacaac gggtccgaaa tcgtggcaac cggtgcgcga      1260
     cgtggaaaac tttacgaact ggatcttttt aggatcgaag actgtgacag tggtgcgtca      1320
     gcgtttgcgt gtggtcgtat cacaaaggag ctggagttgt ggcaccgccg gttcggccac      1380
     ttgaacttga agcagctcga acagttgatt agtagagaaa tggtcgacgg tttgcaacct      1440
     gtgaagaaat gttcggacaa aagtgaagtg atttgcgagc cgtgcattat cggtaaacaa      1500
     acgcgaaagc cttttcccgc gcgcgtcggt aagagatctt cgcgagtgct agaagttgtc      1560
     cactcggacg tatgtggacc ggtgtcgcca atcggacgga acggcgaacg attcttcgtc      1620
     acattcattg acgattggag tcacttcgtc atgatttttc ccatgaagag gaaggacgaa      1680
     gtttttgatt ggtttgtgca ctacgaggcg ttagtcactg ctaaattcgg tacgcgcatt      1740
     tcccggttcg tctgtgacaa cggaggcgaa tacaagaata aggcgttcca gtcattttgc      1800
     agtacgaaag ggatcgaaat ccagtggact gttccgtata ccccggagct taacggaacg      1860
     agcgagcgga tgaatcgcac gatcatcgag agggctcgtg cgatgcttga aggagcaaaa      1920
     ctggagaaaa cgttttgggt tcaagcagtt cagaccgcag cgttcgttgt caacagatcg      1980
     ccgacaactg ctattgaccc gaacaaaact ccagcagagc tttgggaagg aaaacgaccg      2040
     gatgtttcca gacttcggag cttcggatgt gctgtctatg tgcatgtgcc acaagagcgc      2100
     cgcaggaagc tagacccaaa ggcatggaag ggcgtttttg ttgggtacgc ggcgaaagga      2160
     tacctggtgt ggaacccaaa ggataaatcg atcgtggtcg ctcgcgatgt ggattttttg      2220
     gaacagcaag cgttcagaga agagaaagcg aagaaacaaa atagtgtttc ggtgattcgt      2280
     gtcggtgaac ttgctaatga cactgaagaa gagcgaagtg atgtggacag tgacgccggt      2340
     agttctgatc gtggctataa tgctgatgac cctgtngacg atgntgaaca cgatgatgaa      2400
     cagtttacga gtttcgttga tgaagatctt gtgccgggag gtgaagccga tccatgtgcg      2460
     cgaccgntgc ggaaccgtag tgtgccgtcg tggcacagag actatgaagt tgattacgcc      2520
     gggttcgcat tgaatgcgac gtcgtacgtg gagcgtttgc ccaatacagt tgcggagtgt      2580
     cgaaagaggg aagattggcc tttgtggaag caagcgatgc aggaggaaat ggattcgttg      2640
     gcgagaaacg agacgtggac cttagcagag ctgccgaagg gtcggaatgc cgttacgtgt      2700
     aagtgggtgt tcaagttgaa gcaatccgat gacgaagagg ctccaaggta caaggcgaga      2760
     ttggtcgcca gaggattcac ccagaagccg gggtttgact actccgacac gtattcgcct      2820
     gtcgcacgga tggacacgct acgtacggtg ctggcactgg cgaaccatga aggttggacc      2880
     gtccaccaaa tggacgttaa aaccgctttc ctcaacggag agttatcgga ggaaatatat      2940
     atgcgtcagc cggagggctt cgaagagcag aacggactcg tttgccgttt gaacaggtct      3000
     ctgtatggcc ttaagcaggc agcaaggtcg tggaacgaac gattccacaa attcgtagtt      3060
     cgtctgggat tcgtgagaag ccgtaacgat ctttgcctat actgtcgtgg ttcaggagaa      3120
     acgcaagtta tcttggtcat ctacgtggat gatgtgctaa tcgccagcag ttccgggaaa      3180
     ttagtcggaa cggtcaagaa gtgtctcgcc accgaattcg aaatgacgga cgtgggcgag      3240
     gtgaagaatt tcttaggcat gcggattgag cggaatatcg aggagaagac ccttcggatt      3300
     agccaacgac gctacttgga acaccttttg gaccgtttcc agatgctgga ctgtaggccg      3360
     attgctacgc ccatggagaa caggctgaaa ctaccgaaag gtgacgaggc gaagagaacg      3420
     agcaagccat atcgtgagct agttggatgc gtcatgtacg tatcgctgac gtctcggccg      3480
     gacttggctg ttgctgcaaa ctatttcagc cagtttcagg cttgccccaa cgagatacac      3540
     tgggtccatt tgcgccgtgt actacgttac atacgaggaa cgctagatta tgggcttgtc      3600
     taccgaggat gcgatcgtgg tccggtgctc gaagcttttt cggatgctga ctgggcaaac      3660
     gactgtaccg atcgtcggtc tgtgtctggt gcagtattta aggtgtatgg atctactgtg      3720
     agctggagcg cgaagaagca agctaccgtg tctctctctt ctacggaagc tgagctgatc      3780
     gctctctgcg cagctgcttg ccatggtcag tggatggtga ggattttgcg agatctgggg      3840
     gcgaagccga tcactcctat tacctactat gaagacaacc aatcgacgat gagtattgcc      3900
     actaacccga aagattctgg tcgtctgaag cacttggacg tgaaacactt cttcgtccga      3960
     gagctgttgg agagcaattt gattcgagtt gaatatgtac caacgtcgaa gcaacaggcg      4020
     gacatactta cgaagagcct tccgggccct gcattcagga agtttcgtga gtatcttgga      4080
     ttgaccnatt gcagagtttg agcgggcg                                         4108
//
ID   Copia-67_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-67_AA_;
KW   Copia-67_AA-I; Copia-67_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2609-2609 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 220 BP; 56 A; 57 C; 32 G; 75 T; 0 other;
     tgttaagagt gcaaacccta caatccctac gcctatgctc aaccccttct gatgccgaca        60
     ccactgctgt caaaccagtt tcctcttttt atgtttctgc tatccatcat tataacaaca       120
     aagttgatcg aataaacacg cgttgaattc gtttctttcg taaagagtat tttacaagtt       180
     ttattttcga tccgcgagtc ccttcggtcg cttaatttca                             220
//
ID   Copia-68_AA-I repbase;    DNA;    INV; 4184 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-68_AA_;
KW   Copia-68_AA-LTR; Copia-68_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4184
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2610-2610 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1595-2134] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(155..2803,2807..3730)
FT                 /product="Copia-68_AA-I_1p"
FT                 /translation="MAEEEKNERFLLPLFDGGNFTAWKFRMRVLLEEHELL
FT                 ECVETEAGEVPELLDEAGDSVQVKSEKKVNREKRAKKDRKCKSLLISRIHD
FT                 TQLEYVQEKNTPKQIWDALVRVFERKSIASRMHLKRKMLSLRFQSGSMQDH
FT                 FLQFDRLVREYRNTGAVIDDVDVICHLLITLGPAFSTVVTALETMPEDALS
FT                 LEFVKCRLLDEEIKQKGASADSNTSSRSGGAAFAGHKKKEKKKYIMKCYGC
FT                 QQEGHKLVDCPKNQQKVSTKEKNRSKANMADGNGVSFLVLKNGDTITDRQR
FT                 VQWFIDSGCSDHLVNDESLFDELRPLEKPIEIAVAKDGEAIVARHSGTVRL
FT                 MSVVDGESVPCTINNVLFVPSLRFNLFSVLKVEERGMKVLFGDGKVKIFDG
FT                 SRVVTTGVRRGKLYELDFYSIGHCAGKSMLACGRIAKELELWHRRFGHLNM
FT                 HQLEQLIGKQMVDGLSPGKNSNRSEIVCEPCVVGKQTRKPFTMREGKRSSR
FT                 VLEVVHSDVCGPVTPIGRGGEQYFVTFIDDWSHFVMIFPMKSKSEVLEWFQ
FT                 YYEALTTAKFGVRISRLKCDNGGEYRNKAFEGFCRKKGIQIDWTIPYTPEQ
FT                 NGTSERMNRTVVERARAMLEDSKIDESFWVQAVQTAAYLVNRSPTGAIDED
FT                 KTPSERWEGKKPNVSRLRVFGSTVFVHVPAERRKKLDAKAWKGVLVGYSPS
FT                 GYRVWNQTTDEIVAARDVDFVESVEAVGGTKKKPNSEVSVIRVRPIDNDFE
FT                 GQDGEELISDVGSDLEDNYTTVSDDEESDEGEQREPTDIVSGGRPTRSRSA
FT                 PTWHKDYEVDYASFALNALGYVEDLPESVSELRKRSDWPQWQKAMQDEIDS
FT                 QVKNNTWSLVKLPEGRNAISCKWIFKIKRADGQPPRYKARLVARGFSQRHG
FT                 FDYEETYSPVARLDTLRAVLALANKEGMAVHQMDVKTAFLNGTLSEEIYMQ
FT                 QPDGFSCKNGLVCHLHKSIYGLKQASRSWNDRFHSFMEKLGFKRSANDLCL
FT                 YVQGSGRNRVILVLYVDDVLVVGPSEKIVLQVKQALSGEFDMTDVGPVKCF
FT                 LGMKIERDVETKVMRISQRNYLESLLVRFGMEDSRPVSTPMEHRLRLAKGD
FT                 ETKRIDKPYRELVGCIMYVSMTSRPDLAAAANYFSQFQTCFNEEHWAHLRR
FT                 VLRYIKGTLDVGLVYQAHNEAKLLEVFSDADW"
XX
SQ   Sequence 4184 BP; 1114 A; 808 C; 1235 G; 1022 T; 5 other;
     ttttgaataa agctaaagng cnaacgtgta ttttctantc gcttaaagtt aattcgtgtt        60
     tatcgcgttt ccattcgttt ttccgaaagt cctctggcca tatctcttta ggttattggc       120
     ccagtttcgc ggagtgataa aagtgaagtg gataatggca gaggaggaga aaaatgagcg       180
     ttttctgttg ccgcttttcg acgggggaaa cttcaccgca tggaagttcc gcatgcgggt       240
     tctgctcgag gagcacgagc tgctagagtg tgtggagacg gaggcggggg aagtgccgga       300
     gctgttggat gaagcgggtg atagtgttca agtgaaaagc gagaagaaag tgaatcgtga       360
     gaagcgagcg aagaaagaca ggaagtgtaa atcactgtta atttctcgca ttcacgatac       420
     acaacttgag tatgtgcagg agaaaaacac cccgaagcaa atttgggacg ctttggttcg       480
     tgtattcgag cgaaaaagta tcgctagcag aatgcacttg aagaggaaaa tgctttcgtt       540
     gcgttttcag tcgggttcta tgcaggacca ttttctccaa ttcgaccgtc tagtgcgcga       600
     atatcggaac acaggtgcgg tgatcgatga cgtcgacgtg atatgtcatc tgctgatcac       660
     gctcggtccc gctttctcca cggtagtgac ggcattagaa acgatgccgg aagatgcttt       720
     gtcgttggaa tttgtgaagt gtcgtctcct agacgaagaa attaaacaaa agggagcaag       780
     tgcggattcg aatacttcgt cgcgatcggg tggtgcagcg tttgctggcc acaagaagaa       840
     ggaaaagaag aagtatatca tgaagtgtta cggttgccag caagagggcc acaaactagt       900
     ggattgcccg aagaatcagc agaaagtgag tacgaaagaa aagaatcgtt cgaaggcgaa       960
     catggcagat ggaaatggtg tttcgttcct ggttctgaag aacggtgaca ccatcacgga      1020
     tcgacaacga gtgcagtggt ttatagattc cggttgttca gaccatctag tgaacgatga      1080
     gagtctgttc gacgaattgc gaccgctcga gaagccaatt gagattgccg ttgcgaagga      1140
     cggcgaggcg atcgtagcac gtcattccgg aaccgtacga ttgatgtccg tcgtagatgg      1200
     tgagtccgtt ccatgtacta ttaacaatgt gttgtttgta ccttcattgc gattcaattt      1260
     gttctctgta ctaaaagtcg aggaaagggg aatgaaagta ttgttcggcg acggcaaagt      1320
     gaagattttc gacggttcaa gggtagtgac gactggtgta cgtcgaggta aattgtacga      1380
     acttgacttt tactcgatcg gtcattgtgc gggaaagtcg atgttagcgt gcggacgaat      1440
     tgcgaaagaa ctagaactat ggcatcgtag attcgggcat ctgaacatgc accagctcga      1500
     acagctgatc ggtaagcaaa tggttgatgg tttgtcgccc gggaagaact caaaccgaag      1560
     tgaaatcgtt tgtgaacctt gcgtcgtggg taaacaaacc cgaaagcctt ttaccatgcg      1620
     cgaaggaaaa cgttcgtcgc gagtgttaga ggtcgtccat tcagacgtgt gcggccctgt      1680
     aacgccgatc ggtcgaggag gtgaacagta ttttgttacg ttcatagacg attggtcgca      1740
     tttcgtaatg atctttccga tgaaatcaaa gagcgaagtc ctcgagtggt ttcagtatta      1800
     tgaggcactg acaacagcga agtttggggt tcggatttcc cgtctcaagt gtgataatgg      1860
     tggggaatac cggaataaag catttgaagg tttctgccga aagaagggaa tccagatcga      1920
     ctggacgatt ccctatacgc cggaacagaa tggtactagt gagagaatga atcgtaccgt      1980
     tgttgagcga gcgagagcga tgcttgagga ttcgaagatc gatgagtcat tctgggtgca      2040
     ggctgtgcag acggccgcat accttgtgaa caggtctcca acgggtgcga ttgacgaaga      2100
     taaaacacct tcagagcgtt gggagggcaa gaagccaaat gtgtctcgac ttcgtgtttt      2160
     tgggtccact gtgttcgtgc acgtgccggc ggagcggcgc aagaagctgg acgccaaagc      2220
     gtggaagggt gtgctagttg gctattcgcc aagcggatat cgggtgtgga atcaaacaac      2280
     ggatgagata gtggctgctc gcgatgtcga tttcgtggaa tcagttgagg ctgtaggcgg      2340
     tacgaagaag aagccgaaca gtgaagtgtc agtgatccga gtccgtccga ttgacaatga      2400
     ctttgaggga caagacggtg aagaattgat tagtgatgtg ggtagtgatc tcgaagataa      2460
     ctatacaacc gtaagtgacg atgaagaaag cgacgagggt gagcaacgtg aaccaactga      2520
     tattgtttct ggtggaaggc caactcgtag tcgcagtgcg cctacctggc acaaggatta      2580
     tgaagtagac tacgccagtt ttgcgttgaa tgcgttggga tatgttgaag acttgcctga      2640
     atcggtatca gagctacgga agagaagtga ttggcctcaa tggcagaagg ccatgcaaga      2700
     tgagattgac tcgcaggtga agaacaatac atggagtttg gtgaagctgc cagaaggtcg      2760
     gaacgcgata tcttgcaagt ggatcttcaa gatcaaaaga gcggangatg gacagccgcc      2820
     gcgatacaag gctaggctcg tagctagagg cttcagccaa agacatggtt ttgattacga      2880
     ggaaacatac tcgccggtgg ctcggctgga tacgttgcgt gcggttttgg cgttggcaaa      2940
     caaggagggg atggccgtac atcagatgga tgtcaagacg gcgttcctca atggaacctt      3000
     gtcagaggag atttacatgc aacagccgga tggattcagc tgtaagaatg gtctggtatg      3060
     tcaccttcac aagtcaatat atggcctaaa gcaagcgtcc agatcatgga acgatcggtt      3120
     ccattctttt atggaaaagt tgggtttcaa gcgcagtgcg aatgatcttt gtctctacgt      3180
     acagggatca ggaaggaatc gagtgatact agtattatat gtcgacgatg tcctggtggt      3240
     tggtccttcg gagaagatag ttctgcaagt aaagcaagct ttgtccggag aattcgatat      3300
     gaccgatgta ggtcctgtga agtgtttcct agggatgaag atagaacggg atgttgaaac      3360
     gaaggttatg cgaatcagcc agagaaacta tttggagagc ctgttggttc gtttcggcat      3420
     ggaggacagt cgtcctgtct ccacaccaat ggagcacagg ttgcgacttg cgaagggaga      3480
     tgagaccaag cggattgata agccctaccg tgagctcgta ggctgtatta tgtacgtgtc      3540
     gatgacttcg aggccggatc tggctgcagc ggctaactac tttagccagt ttcaaacctg      3600
     tttcaacgaa gagcactggg ctcatttgcg aagagtgttg agatacatca agggaacctt      3660
     ggatgtggga ctcgtgtatc aagcgcataa cgaagcaaag ttgctggaag ttttctccga      3720
     cgcggactgg gncaacgata ttacggatcg tcgctctgta tccggggcgg tgtttaaggt      3780
     gtttggtgca actgttagct ggttcgcgag gaagcaaccc acagtatcgc tctcatcaac      3840
     ggaggccgaa ctcgtcgctc tatgtgcagc agcatgccat agccagtggt tggtacgtgt      3900
     gttgaaggac ctgggatgga aaacggacaa ccctgtgcta tttcgtgaag acaatcagtc      3960
     cacaatgaag atagtgtcaa atcctaagga taccggaaga cttaagcata tcgacgtgaa      4020
     gtatttctac gttcgggatc ttgttgagaa cggaagtatc cagatagaat acgtgccatc      4080
     atcggaacag caggcagact tgttaaccaa aggtcttcct gcaccagctt tcgtgaagct      4140
     gcggtcgagc atcggagttc tggattgcag ctcttgagcg ggcg                       4184
//
ID   Copia-68_AA-LTR repbase;    DNA;    INV; 118 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-68_AA_;
KW   Copia-68_AA-I; Copia-68_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-118
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2611-2611 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 118 BP; 31 A; 35 C; 14 G; 38 T; 0 other;
     tgttgagaat tacaatctct gctatccgtg tacctcattg atgcgcccct cgttgactat        60
     gaccatctgt catccatcaa tataactctc cacttttatt ctacacagca atcaacca         118
//
ID   Copia-69_AA-I repbase;    DNA;    INV; 4109 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-69_AA_;
KW   Copia-69_AA-LTR; Copia-69_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4109
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2612-2612 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1522-2049] - Integrase core
CC   'CTTCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           817..4092
FT                 /product="Copia-69_AA-I_1p"
FT                 /translation="MSKLESSSIASGPKAKQVQDSGVPLLFWANADRSDAV
FT                 AGEAANCYTVKGATRCWFVDSGASQHMTSNKSFFTELVEDVRVEVTLANGK
FT                 KTFAAGVGNGMLLCEDGIGNKRDVKVQDVLLVPELEGNLISVSMLVAKNFS
FT                 VVFDSHGCRINDASGCTVAIAYLRGGMYLLKCCERALATVASRHTELCQHT
FT                 WHRRFGHRDYDAIDLINRKELGTNMRVIDCGVKSVCECCLEGKLHRKPFPK
FT                 QTQRRAKEVLELLHTDVCGPFKHVTPGGKKYFMTIIDDYSRYVTVYLLANK
FT                 SEVPGKIKEFVNLVKNQFNRKPKVIRSDNGGEYVNKELREFFAAEGIRAEF
FT                 TTPYSPQQNGVAERRNLYLQEMALCTLIDAELPKEFWGEAVATATFLQNRL
FT                 PSRSIGCTPFELWFGRKPVMQGLKVFGCEAYVHIPSEKRGKMDSKAKKMIF
FT                 IGYCSQAKAYRFLDKDTRKVIVSRDASFLELGAEVSSERSAEDSNGNEFEV
FT                 EIGEVSGKRPVPKEDPDEEADSFYSGSEESDSASEEVGAVGGEVDDRRRSG
FT                 RSTQGVLPRRLDDYVVGETGMAAFCGEEPMTFEQAISSAEKKKWLDAMKDE
FT                 MRSLEDNNTWTLVRLPPGREPVGSRWVFKKKEDSDGQVVRFKARVVAKGYS
FT                 QRFGQDFEEVFAPVAMQQTFRVLLAVASNRKMDVRHIDVKCAYLYGLLKED
FT                 IFMTQPPGFEVAGKEDWVCKLNRSIYGLKQAARVWNHTIKEFLISIGFEQS
FT                 TSDACLFMKNLGNGEWLYLLIYVDDMVLVCRVKSEVDKVEEQLRKRFRITS
FT                 LGTICHFLGMSVNRGTDGVYSINQAAFIRKIAKNYDLEEAKRSSVPMDTGY
FT                 YKNRMESRNLPNNVEYHRLIGSLLYIATNSRPDIAATVSILSRKINSPLQS
FT                 DWTELKRVVRYLCGTVDYRLSLNAVNLQLEGFCDADWASDTADRKSNSGFV
FT                 FRLGSATVSWGSRKQSCVSASTMEAEYVALAEAAQETVWLRRLLAELNAEQ
FT                 KCSTVIWEDNKSCLDFASQEKQNRRSKHIDTKYHFTRELYNSGKISLKYCA
FT                 TDNMLADIMTKPLGAVKVRKFSEMLGLVGVKACHR"
XX
SQ   Sequence 4109 BP; 1120 A; 812 C; 1183 G; 994 T; 0 other;
     ggttatgggc ccagtttttc ggtcggaata tcggaaggat ttgcgaataa atcgtcggtt        60
     cgattggctg tacgcgactc aagcgcagga ggagaatttc cttgaggaag aggaagatgg       120
     cggacgctgc taagtttgca ttcccgagac tttccaacac aaattggaac gtgtggaagt       180
     ttcggatgga aatgcttttg actcgtgagg agttatggca tgttatcgac gaggccaagc       240
     cggagcctgt cacggagcag tggacgaagg aggataagcg agcaaaagct accatcggac       300
     tcaccatcga agacagtcag ctggggctgc tgaaaaatgc tacgagtgcg cgtgccgtat       360
     gggatgcact taaaaagcac cacgagaaag cgacagttac ttcccgtgtt tcgctgctta       420
     aaaagctgtg caataaaaat ctgcaggaag gtagtgagat ggaaagtcat ctacttgaga       480
     tcgaagaact tttcgatcgt ctgcaagcag ctggactgga acttgagatg gagatgaaag       540
     ttgccatggt tttgcggagc cttccggact cttacagtgg tctggtgact gcactcgaga       600
     gtcgtccgga cgaagacata acaatggaac tagttaaatc caaacttcgg gatgaacatc       660
     tcaagcgcac ggaacgagga tcaagcgaca gcaaggctct gaaaacagcc gcgagaggaa       720
     aggcgtccga aaaggtatgt ttctattgta gaaagcccgg ccacttccgg aagaactgcc       780
     cggaagtacc tagcgtctct caagggggaa acggatatga gcaagcttga atcatcgtcg       840
     attgcaagcg gtccgaaggc gaagcaggtg caggactctg gtgtgccgtt acttttctgg       900
     gcgaatgctg atagaagtga tgcagttgca ggggaggctg caaactgcta tacggtgaaa       960
     ggtgcaacgc gatgctggtt cgtcgatagc ggtgcgtcac agcacatgac cagcaacaaa      1020
     tcatttttca ccgagctggt tgaggacgtg cgagtcgaag ttactcttgc caacggtaag      1080
     aaaacgtttg ccgccggcgt tggcaatggg atgctgctgt gcgaggatgg catcggtaac      1140
     aagcgtgacg ttaaggttca agatgttctt ctcgtaccgg agttggaggg caatcttata      1200
     tccgtgagta tgctcgttgc gaagaatttt tctgttgtgt ttgattcaca tggctgccga      1260
     atcaatgatg cgagtggctg taccgtggcc atcgcttatt tgcgaggtgg tatgtacctg      1320
     ttgaagtgct gtgaaagagc tctggccact gttgcttctc gtcacactga actctgccaa      1380
     catacgtggc atcgccgctt tggccacagg gactacgatg cgattgatct gatcaatagg      1440
     aaggagctag gcacgaatat gagggtgatt gattgcggag taaagtcggt gtgtgagtgt      1500
     tgccttgaag gcaaactaca tcgaaagccg ttcccgaagc aaacacagag gcgtgccaag      1560
     gaggtacttg agcttttgca tactgatgtt tgtgggcctt tcaagcatgt gacgcctgga      1620
     ggcaaaaaat atttcatgac aataatcgac gattatagcc gttatgttac cgtttatttg      1680
     ttggcgaaca aatccgaagt acctgggaag ataaaagagt ttgtgaatct ggttaaaaat      1740
     cagttcaacc gtaaaccaaa agtgatcaga tcggacaacg gaggagagta cgtcaacaag      1800
     gagcttcgag agttctttgc tgccgaaggt attagagcgg agttcaccac gccctactct      1860
     ccgcagcaaa atggagtggc agagcgaaga aatctgtatc ttcaagaaat ggctttatgt      1920
     acgctcatcg atgccgaact tccaaaggag ttctggggtg aggcggtagc cacggcgacg      1980
     tttctccaaa atcggttgcc atctcgttca atcggatgta ctccgttcga gctctggttc      2040
     ggccgtaaac cggtgatgca aggtttgaaa gttttcggct gcgaggcgta tgtccacatt      2100
     ccgagcgaga agagaggtaa gatggatagt aaggccaaga aaatgatctt cattggatac      2160
     tgcagtcaag ctaaggccta tcggtttctt gataaggaca ctcgaaaggt aattgtgagt      2220
     agagatgcct cttttctgga attgggtgct gaagttagca gtgagcgttc tgcggaagat      2280
     agtaacggaa acgaatttga agttgagatt ggtgaagtga gtggtaagcg gccggtaccg      2340
     aaagaagatc cggatgaaga agccgattcc ttttatagtg gttcagaaga aagcgattct      2400
     gcaagtgaag aagtcggagc tgtaggagga gaagttgatg accggcgacg atctggccgc      2460
     agtactcaag gagtattgcc aaggcgactc gacgactacg tagttggtga aacaggtatg      2520
     gctgcgtttt gcggtgaaga accgatgaca ttcgagcaag cgatatcttc tgccgaaaag      2580
     aaaaaatggt tggatgcgat gaaggatgag atgcgttctt tggaagacaa taacacctgg      2640
     acactggtta ggttgccgcc tggacgagaa ccagtgggaa gtcgctgggt attcaagaaa      2700
     aaggaggatt cggacggtca agttgtacgg ttcaaagctc gagttgtagc gaaaggctac      2760
     tcccagcgct tcgggcaaga tttcgaagaa gtttttgcgc ctgttgcaat gcaacaaacg      2820
     tttcgtgttc ttctggcagt tgccagcaac aggaagatgg acgttagaca catcgatgtt      2880
     aaatgtgctt acctctacgg cctgttaaag gaagatattt tcatgaccca accgccggga      2940
     ttcgaagttg ctggaaagga ggactgggtt tgcaagttga accggagtat ttacggcttg      3000
     aaacaggccg ctcgggtctg gaaccacact atcaaggagt tcctgataag cattggtttc      3060
     gagcagtcaa cttcagatgc ctgtttgttt atgaaaaatc tgggcaatgg agaatggttg      3120
     tatttgttaa tctacgtgga tgacatggta cttgtatgcc gtgttaagag cgaagttgat      3180
     aaggtcgagg aacagctgcg gaaaagattc cgtataacat cgttgggaac gatttgtcac      3240
     tttctcggaa tgagcgtgaa ccgaggaact gatggggtgt attcgattaa tcaagctgct      3300
     tttattcgaa aaattgctaa gaactacgat ttggaggaag ctaaacgatc aagcgttcca      3360
     atggacaccg gctattacaa aaacaggatg gagtcgagga atttgccgaa caatgtcgag      3420
     tatcatcggt tgatcgggtc actgctgtac attgccacga acagccgtcc tgatattgct      3480
     gctaccgttt caattttaag ccggaaaatc aacagccctt tgcagtcgga ttggacggag      3540
     ctcaaacgcg tcgtgagata tctttgcggg acagtcgact acagattaag tctcaatgca      3600
     gtaaatctac aactggaagg tttttgcgac gctgattggg caagtgatac tgcggatcgg      3660
     aagtcgaaca gtggtttcgt ttttcgtctt ggcagcgcaa cggtgagctg ggggagtcgt      3720
     aaacaatcgt gcgtttcggc ctctactatg gaggcagaat atgtagcgct ggctgaggca      3780
     gcacaagaaa ctgtctggtt gcgcagactt ctagcggagc taaatgcgga gcagaaatgc      3840
     tcaaccgtga tctgggaaga caacaagagc tgtttggact tcgcttctca agaaaagcaa      3900
     aaccgtcgtt ctaaacatat agatacgaaa tatcatttca caagggagct gtacaactct      3960
     gggaaaattt cgctgaagta ctgtgcgacc gataacatgc ttgcagacat aatgacgaaa      4020
     ccattaggag ctgtaaaagt tcggaagttc tcggagatgc tgggtctggt cggcgtcaag      4080
     gcctgccatc gctgatcatc gaggaggag                                        4109
//
ID   Copia-69_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-69_AA_;
KW   Copia-69_AA-I; Copia-69_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2613-2613 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 221 BP; 58 A; 49 C; 49 G; 65 T; 0 other;
     tgttgggccg cccggttcag ttaccactgg gcatatagtg cgacgcaaca gcgctggccc        60
     atttgttttg tagagtaaaa tgtgtagaat tcactcagta aagtgacaat aaaatatgta       120
     accgcgtgaa tttggttaat aaagttaaag ttgttctatc gaacgttttc ccggtatact       180
     ttcattccgt tacgcggatt ccactgcccg aacctccgac a                           221
//
ID   Copia-6_AA-I repbase;    DNA;    INV; 4141 BP.
XX
AC   supercont1.224;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_AA_;
KW   Copia-6_AA-LTR; Copia-6_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4141
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.224; Positions  320413  324553.
XX
CC   Positions [1558-2097] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..4128
FT                 /product="Copia-6_AA-I_1p"
FT                 /translation="MEDSGKEEIRRVAMFDGHNFVSWKFRMMTLLEEHDLV
FT                 ECIDVEIDDVEELKVEETDTAAEQQQKRKALAERQKKDKKCKSIIVSRIHD
FT                 DQLELLHGKSSAKQMWDTLVRIFERKSVAKRMQLNRELFELRHSGGPLHDY
FT                 FVKYDRLIRLFRNAGGKIDDIDVVCRLLLSLGSEYDAVVTSIESQPEEQIT
FT                 MEFVKCRLLDEEIKRKSIAASDVCGDHNESAAFSGSGKVSRTPKLKKPRVW
FT                 KCFGCQKEGHKIANCPEKKEKKAVKPSAYSAEPCAEPSDDGGGVVFLADER
FT                 KSKPPMSRVQWFVDSGATEHICNDKSLFAKLSPLKKPMEIAVAKNGEWVTA
FT                 KYVGDVPVLSVVGEKVIESTVSRVLFIPEARCNLFSLSKVESAGMKVVIAG
FT                 GRLEIFRGSNVVATGERRNKLYELNFFSRRCNNDMLCFSGQISKETELWHR
FT                 RYGHLGDRNLSSLMKNGTVKGIPSKCSGGATTICEPCVSAKQTRNPFTLSE
FT                 ERRSSRVLEIVHSDVCGPVTPVGWNNVRYFVSFIDDWTRFTVVYLIRSKDE
FT                 VVDCFKNYEAQVTAKFGVKISRFRSDNGGEYTSKAMRSFCASKGIKMELTV
FT                 PYTPEQNGICERMNRTLVEKARSMLFDSAVGREFWGEAIQTAAYLTNRSPC
FT                 SVLDSSVTPSEVWEGTKPDVSKLRVFGSPAYCHIPKERRKKLDEKTWKGVL
FT                 VGYCANGYRVWNPETRQIVAVRDIIIDENARLADVQSKKEVVRESSVWDYA
FT                 EENSGQQEEDDNHAEAELEESVRSDNSEIFDTCDDSAGEEIIPVQSSARRQ
FT                 RKPPSWHQDYDMTFAGVALGAMNYVNNLPDTIAELRTRADWPRWKLAVQEE
FT                 LESLRKNGTWTLCKLPEGRKPITCKWIFRIKPGDDEQPDRFKARLVARGFC
FT                 QKKGFDFNETYSPVAKLDTLRVMLAIANKERMSVHQMDVRTAFLNGVLSEE
FT                 IYMTQPEGMHQEDGLVCKLRKSIYGLKQASKAWNDKFHGFVTELGFRRSKS
FT                 DQCLYVRGTGKKKIFLILYVDDILVIGHDSNEIELVKTSLAKGFDMTDGGE
FT                 ISSFLGMKIERNLQRRTMRISQRRYLEALLDRFNMADCKTSSIPMECRLRL
FT                 DKGTEENRTSKPYRELIGCLMYVALTSRPDLLAAVNYYSQFQSCPTDMHWT
FT                 HLKRILRYIKGTLDLGLEYMGRDDADMLSAFCDADWANDISDRRSVTGYLF
FT                 KVFDCTVVWATRKQRTVALSSTEAELCALCEATCDGVWLTRLLEDVGYRSD
FT                 VPIPYHEDNQSTIRIVQEPRDRSRLKHIDVKDCFVRNLVQQGSVVLKYVPT
FT                 ETQEADILTKGLPAGHFKRLRSAIGLRDSMN"
XX
SQ   Sequence 4141 BP; 1144 A; 818 C; 1192 G; 987 T; 0 other;
     ttaggttatg ggcccaggac cggttccgga ttgcgtcgcg aaagtggttc tagttctggt        60
     gctttgagaa acgcggagtg aaagtgtttt gtgtgcatca tggaggattc cggaaaggag       120
     gagatccgtc gagtcgccat gtttgatggc cacaacttcg tctcgtggaa atttcgcatg       180
     atgaccttgt tagaggaaca tgacttggtc gagtgtatcg atgtcgaaat cgacgacgta       240
     gaggagttaa aagtggaaga aacagatacg gcggctgagc agcagcaaaa acgaaaagct       300
     ctcgcggagc gccagaagaa agacaaaaag tgcaagtcca tcatcgtatc gcgaatccac       360
     gatgatcagt tagagttgct tcacgggaaa agttcggcaa aacagatgtg ggatacatta       420
     gtgcgcattt tcgagagaaa aagtgttgca aaacgtatgc agctgaaccg cgaacttttc       480
     gagctacgtc actcgggtgg tccattacac gattattttg tgaaatacga tcggcttatt       540
     cgtttgttcc gaaacgccgg tggaaaaatc gacgatatcg acgtcgtttg tcggttgctt       600
     ttgtcgttgg gctcggagta cgacgctgtc gtgacgtcga tcgagagtca gccggaagaa       660
     caaataacga tggagttcgt taagtgtaga cttctcgacg aagagataaa gcgaaagtca       720
     attgccgcga gtgatgtgtg tggagaccac aacgagtccg ccgctttcag tggtagtggt       780
     aaagtttctc gcaccccaaa gctgaaaaag ccaagagtgt ggaagtgctt cgggtgccag       840
     aaagagggac acaagattgc gaactgcccc gagaagaaag agaagaaagc agtgaaaccg       900
     tcggcctaca gcgcggagcc ctgtgcagag ccaagtgatg atggtggtgg tgtagtgttt       960
     ttggcggacg aacgcaaaag caaaccaccg atgagtcgag tgcagtggtt cgtggactcg      1020
     ggcgccaccg aacacatatg caatgacaaa agcttgtttg caaagctctc cccactgaag      1080
     aagccgatgg aaatagccgt ggcgaagaac ggcgagtggg tgacagccaa atacgttggt      1140
     gatgtgcctg tattgtcggt cgtcggagaa aaagtgatcg agtcgacagt gagccgagtg      1200
     ttgtttattc cggaggcgcg atgtaatttg ttttcgctga gcaaagtgga gtctgccgga      1260
     atgaaagtag tgattgctgg tggtcggctg gaaatatttc gtgggtcgaa tgtagtagcc      1320
     accggtgaaa ggcggaataa actgtacgag ttgaactttt tctcgcgtcg gtgcaacaat      1380
     gacatgttgt gtttttcggg acaaatcagc aaagaaaccg agctttggca tcgccggtat      1440
     ggccatctcg gtgatcgaaa tttgtcgtca ctaatgaaga acggaacagt gaagggaatt      1500
     ccgtcgaagt gtagtggtgg tgcgacaaca atttgtgagc cgtgtgtgtc tgcgaaacag      1560
     acgagaaatc cgtttacgct gagtgaagag cgtcgttcga gtcgtgtctt agaaattgtc      1620
     cactcggatg tttgtgggcc tgtgacccct gtcggatgga acaatgtgcg ttactttgtg      1680
     agttttattg acgattggac acgttttacg gtcgtgtacc tgatccgatc aaaggacgaa      1740
     gtagtggatt gtttcaaaaa ctatgaagcg caagtaacgg caaagttcgg agtgaaaatc      1800
     tcgcgttttc ggtcggacaa tggtggtgaa tacaccagta aggcaatgcg ttcgttctgt      1860
     gcgagtaagg gtatcaaaat ggaacttact gtgccctaca ctcccgaaca aaacgggata      1920
     tgtgaacgaa tgaacagaac cctcgtagag aaagcgcgtt cgatgttatt cgattccgcc      1980
     gtcggtcgtg agttctgggg ggaagcgata caaactgcgg cgtatttgac gaacagaagc      2040
     ccgtgtagtg ttctcgattc gagtgtgacg ccgagtgaag tgtgggaagg cacgaaacct      2100
     gatgtttcga agctgcgagt ttttggttcg ccagcttact gccacatccc aaaagaacgt      2160
     cggaagaagc tggatgagaa gacgtggaag ggagtgctgg tcgggtactg cgcgaatggg      2220
     tatcgagtgt ggaaccccga aacgcgacaa attgttgctg tgcgtgatat catcatcgac      2280
     gagaatgcga gattggccga tgtgcaatcg aagaaagaag tagtgcgtga atcgagcgta      2340
     tgggattacg ctgaagaaaa cagtggacag caagaagaag acgataacca cgctgaagcg      2400
     gaactagaag agagcgtgag aagtgataac tctgagattt ttgacacttg tgatgacagt      2460
     gctggtgaag aaataattcc tgtgcaaagc agtgctcgcc ggcaacggaa gccgccgtca      2520
     tggcatcagg attatgacat gaccttcgct ggagtagcgc ttggtgccat gaattatgtg      2580
     aataatttgc cggatacgat cgctgagctg agaacgcgtg ctgactggcc gagatggaag      2640
     ttggccgttc aagaagagtt ggagtcgcta cggaaaaatg gaacgtggac cctgtgtaag      2700
     cttccggagg ggcgaaagcc aataacatgt aagtggattt ttcgcatcaa gcccggagac      2760
     gacgagcagc cggatcgatt taaagcaagg ttagtagcca ggggtttttg ccagaagaaa      2820
     ggatttgact tcaatgaaac gtattcgcca gtcgccaaat tggatacctt gcgcgttatg      2880
     ctggcgatag ctaataaaga gcgcatgtct gtccatcaaa tggacgtgcg cacggcattc      2940
     ttgaatggtg ttctctctga ggaaatatat atgactcagc ctgagggtat gcaccaagaa      3000
     gatggactag tctgcaaatt gcgtaagtcc atatacggcc ttaaacaggc ttccaaagca      3060
     tggaatgaca agtttcatgg ctttgtgact gaattaggat ttcgacgatc aaagagcgat      3120
     caatgcctct atgtgcgcgg cactggtaag aagaagattt ttctgattct gtatgtcgac      3180
     gacattcttg tcatcggaca tgattcaaac gagatcgaac ttgtaaaaac gagtctcgca      3240
     aaaggtttcg acatgacaga tggaggagaa atatctagct ttcttgggat gaagatagag      3300
     cgaaatctgc aacgtcgtac gatgagaatt agtcagcgca gatatctgga agctctactc      3360
     gatcgtttca acatggctga ttgtaaaaca agctctatac cgatggagtg ccgtcttcgt      3420
     ttggataagg gcaccgaaga aaaccgaacg agtaagccat acagagaact aataggctgt      3480
     ctcatgtatg tagctctgac gagccgtccg gatttgttgg cagcagtaaa ttattacagc      3540
     caattccagt cctgcccaac agacatgcat tggacacacc taaaacgaat tttgcggtac      3600
     ataaagggta cacttgatct gggactcgaa tacatgggac gagacgacgc tgatatgcta      3660
     tcggccttct gcgacgctga ctgggcgaat gacatcagtg acaggcggtc ggttaccgga      3720
     tatcttttta aagtattcga ctgtacggta gtttgggcaa ctcgtaagca gcgtaccgta      3780
     gctttatctt ccaccgaggc cgagctgtgt gctctttgcg aggcaacctg cgatggagtc      3840
     tggttgacac gtttactcga agatgttggc tacagaagcg acgtgccaat accgtatcat      3900
     gaagacaatc agtctaccat aaggatcgtc caagaacctc gtgatcgaag cagacttaag      3960
     cacattgatg tgaaggattg ttttgtgcgg aatttggtgc aacaaggaag cgttgtgctg      4020
     aaatacgttc caacggaaac gcaagaagct gacattttaa cgaaaggttt gccagccggt      4080
     catttcaagc gtctccgatc tgccataggg ttacgagatt ccatgaatta aggaggggta      4140
     t                                                                      4141
//
ID   Copia-6_AA-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   supercont1.224;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_AA_;
KW   Copia-6_AA-I; Copia-6_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-182
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.224; Positions  320231  320412.
XX
SQ   Sequence 182 BP; 51 A; 40 C; 31 G; 60 T; 0 other;
     tgaggtataa ttcaggtaat accgtttaac cgtgtatagt aaatctctac acagtctccc        60
     tctgagatct gatacacagc catcttgttt ttcactctgt aaaagttcct cgagtaataa       120
     agacacgttt gttataacta gcgagttacg taagtcttta tccgaattgt ccggtcatcc       180
     ca                                                                      182
//
ID   Copia-6_AG-I repbase;    DNA;    INV; 4099 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Copia-6_AG internal region.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4099
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1456-1456 (2010).
XX
DR   [1] (Consensus)
XX
CC   Consensus sequence out of four sequences of internal region of
CC   Copia-6_AG. The four sequences within this family have a
CC   p-distance at the nucleotide level considering the full-length
CC   alignment of 0,0009 (sd=0,0003). The LTRs are 149 nucleotides
CC   long and present a very high degree of identity (p-dist=0,0033,
CC   ds=0,0038). In two of these sequences the 3? and 5? LTRs are
CC   identical  indicating that they have inserted recently and have
CC   not had time to accumulate mutations between the LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..4089
FT                 /product="Copia-6_AG-I_1p"
FT                 /translation="SRIFSPLFRRSFKMNPNSTGSSSAAGSSISTSSLPGI
FT                 ERLIGRENWETWKFAVQTFLELEDLWCAVKPKKNDDGSYESVDTAKDRKAR
FT                 AKIILLLEPVNYVHVKEATTAKEVWSKLEKAFEDSGLTRRVGLLHKLIKTD
FT                 LESCDSMSDYVNRIVSTAHQLNGIGFPISEEWVGNLLLAGLTEQYRPMIMA
FT                 LENSGIVITGDIIKTKLLQEVPPTSVEPAFAARTKHVNAGKQTKKSNTAKG
FT                 PKCRKCSKFGHIAKDCYSTKGNDSFCVVLSTCGSKEYGKWYFDSGASVHMT
FT                 NNSDFLMHAKTSSGTVVAANGENMQITAKGSCVLKPSCQKGEIPVDDVQLI
FT                 PNLSVNLLSVNQIVKKGYSVTFTNEGCEVVNRNGDIIATGSHDNDLFKLDE
FT                 RKEGEKTALTVSSTGSLELWHQRMGHLNINGVRSLANGIVTGVNIVGDTMA
FT                 DCKECPMGKHSRHPFSKIGSRAAEILELVHSDICGPMEVKSLGGSRYYIVF
FT                 VDDKSRRMWTYFLKSKSEAEVNKIFQDFHKMVERQSGRKLKVLRTDNGKEY
FT                 VNTGFTNYLKKHGIVHQTSNAYTPEQNGMAERANRSIVERARCMLHMAKLS
FT                 KSFWAEAVAAAVYLLNRSPTKGHNVTPQEAWSGKKPNLSHIRIFGTRAMKF
FT                 IPKQYRKKWDAKSEECILTGFDEFTKGYRLYNIRSKKVTVSREVNFINEGV
FT                 AVPIQEKSSRRHMILLEHEETVSLSPNATSQMEAVLSENEDEDSDSEYFTD
FT                 ANNETSEDTDGTTNEFDETVVDNDAAVNSEPLVIPTQSQILRRSSRTRKVP
FT                 ERYNDSIIPHGSGLFSNVTSSKIMSSNSSEDPITHQDAMSRSDSERWKVAM
FT                 QEEYQALIDNSTWRLTTLPEGRKAIKCKWVFKTKHDAAGKVNRYKARLVIK
FT                 GYSQRKGVDYNETYSPVVRHSSLRYLFALAARNNLLVDQMDAITAFLQGDL
FT                 EEEIYMEQPPCFEQPGKQNMVCRLNKALYGLKQSSRVWNTKLDAALKQLGL
FT                 EQSKYDPCLYFYNGNGNMLFVAIYVDDLMIFSNNEEMKNQLKTKLSSMFRM
FT                 KDLGPAKHCLGIRVNYLNDGIALDQEAYIETILSRFKMQDCKAVATPMNSS
FT                 IKLTKEMSPQTEEEKEEMSAVPFQEAVGCLMYLAQCTRPDILFAVNQLSRY
FT                 NNNPGSRHWQAVKHLMRYLRGTASMKLKYYRKGNEQITGYSDADWAADTED
FT                 RKSTSGYIFLMQGGAVSWCCKRQPTVALSTCEAEYMALSAAVQEASWWKGL
FT                 LEQFGKKQSIQIFCDNQSTICIAKNGGYTPRTKHIDIRHHYIRDALDRNVV
FT                 NLHYINTEEQVADGLTKALQRIKQERNRRSMGITQQSA"
XX
SQ   Sequence 4099 BP; 1340 A; 791 C; 984 G; 984 T; 0 other;
     aggttatggg cccagaaccc agaagcgtac agtgattgaa gcagaatctt ttcgccgtta        60
     ttccgaagaa gttttaagat gaacccgaac tccaccggat cctcaagcgc tgcaggtagt       120
     agcatttcaa catcaagtct tcctggcata gaacgactca tcgggagaga aaattgggaa       180
     acatggaagt ttgccgtgca aacgttcctg gaacttgaag atctctggtg tgcagtaaag       240
     ccgaagaaaa acgacgatgg aagctacgaa tccgtcgata cagcaaagga tcgaaaggca       300
     cgagcgaaaa tcatcttact tcttgaacca gtgaactacg ttcacgtgaa ggaagcgaca       360
     acagcgaaag aagtttggtc caaactagaa aaggctttcg aagactctgg cctcacaaga       420
     cgagtcggat tgttgcataa attaatcaag acagatctag aatcatgcga ttctatgtcg       480
     gattatgtta atcgtattgt atcaacggcg catcaactga atggaattgg tttcccgatt       540
     tcagaggagt gggtcggaaa tctattactg gctggattaa cagaacagta tcgcccaatg       600
     atcatggccc ttgaaaactc cggtattgtc atcactgggg acatcattaa aacgaaactt       660
     ctacaagagg ttcctcccac atcagttgaa cctgcgtttg cggcaaggac gaagcacgtt       720
     aatgctggta agcaaactaa aaaatcgaat acagctaagg gaccgaaatg tcgaaaatgt       780
     tcgaaatttg gccatatagc gaaggattgc tacagcacga agggaaacga ttcgttctgt       840
     gtagtgcttt ctacgtgtgg atcgaaggaa tacggaaaat ggtatttcga ttccggagca       900
     agtgtccaca tgacgaacaa tagcgatttt ttgatgcatg cgaaaacatc tagtggaact       960
     gtggtagcag ccaacgggga gaacatgcaa atcaccgcga agggatcctg cgttttgaag      1020
     ccttcgtgcc aaaaaggtga aattcccgtt gatgacgtgc agctaatccc gaatctatcc      1080
     gtgaaccttt tatcggtaaa tcaaattgtg aaaaaaggct actccgttac gttcaccaat      1140
     gaaggatgcg aagtggttaa ccgaaacggc gatatcattg ctactggtag ccatgacaac      1200
     gatctgttca agcttgacga acgtaaagaa ggtgagaaaa ccgcgttgac agtttcttca      1260
     acagggagct tggaactatg gcatcaaagg atgggccatc ttaacatcaa cggtgtccga      1320
     agccttgcaa atggaatagt gactggcgtc aatattgttg gagataccat ggccgattgc      1380
     aaagaatgtc caatgggcaa acatagccgt catcctttta gcaagatagg atcgcgggcg      1440
     gctgaaatac tcgaattggt tcattctgac atttgcgggc cgatggaagt caaatctcta      1500
     ggaggaagcc gatattatat tgtatttgtg gatgacaaat cacgccggat gtggacatat      1560
     ttcttgaaat ccaagtcgga agctgaggta aacaaaattt tccaggattt tcacaagatg      1620
     gtagaacggc aatctggacg aaaattgaag gtactcagaa cagacaatgg aaaagaatat      1680
     gtcaacacag ggttcacaaa ctacttaaag aagcacggca ttgttcatca aacatccaac      1740
     gcatacactc cggaacagaa tggcatggcc gaacgagcga ataggtcgat tgtggagcgt      1800
     gcaaggtgca tgttacacat ggcgaaactt tctaaaagtt tttgggcgga agctgtggct      1860
     gctgctgtgt accttctgaa tcgttctcca accaaaggcc ataatgttac tccgcaggaa      1920
     gcgtggtctg gtaagaaacc taacttgtcc catattcgga tctttggtac tagagcgatg      1980
     aaatttattc cgaagcaata tcgcaagaag tgggacgcta aatcagaaga gtgcattctg      2040
     accggtttcg atgagtttac caaagggtat agattgtaca acatcagatc gaagaaagta      2100
     acagtcagtc gtgaagtaaa tttcattaat gaaggtgttg ctgttcctat ccaagaaaaa      2160
     tcaagcagaa ggcatatgat tctccttgaa catgaagaga cagtttctct ttcaccgaac      2220
     gctacatcac aaatggaggc agttttgagt gaaaatgagg acgaggacag cgacagcgaa      2280
     tacttcacgg acgcgaacaa tgaaacttct gaagataccg atggaactac taacgaattt      2340
     gacgaaacag tggtcgataa tgatgcagct gtgaacagcg aacctctcgt tataccaact      2400
     caatcgcaaa tcctgaggcg aagcagtcgg acgcgtaaag tcccagagag gtataatgat      2460
     tctataatcc cacatggctc tggtcttttc agcaatgtta ccagttcaaa gatcatgagc      2520
     agcaattcaa gcgaggatcc aatcacacac caggatgcaa tgtcgcgtag cgattcagaa      2580
     cgttggaaag tagcgatgca agaagaatat caagcgttga ttgacaacag cacatggaga      2640
     ttgacaactc ttccagaagg taggaaagca atcaaatgta aatgggtgtt taaaacaaaa      2700
     cacgatgcgg ctggaaaagt caaccgctac aaggcgcgct tggtgataaa gggatattct      2760
     cagcgaaagg gggtagatta taacgaaaca tattcacccg tagttcgtca tagttccctg      2820
     agatatttat ttgcactagc ggccagaaat aatctcttgg tggatcagat ggatgcgata      2880
     actgcttttc tacaaggaga tttggaagag gagatataca tggagcaacc accgtgtttt      2940
     gagcagcctg gcaagcaaaa catggtatgt cgattgaaca aagcgttgta cggactaaaa      3000
     caatcaagtc gtgtctggaa tacgaagcta gatgcagcac tgaaacaact gggtttggaa      3060
     caatcgaagt atgatccatg tttatatttc tataatggca atggaaatat gctgtttgta      3120
     gccatttatg tggacgattt aatgattttt agtaataatg aagaaatgaa gaatcagctg      3180
     aagacgaaat tgagcagcat gttccggatg aaggatttgg gaccagctaa acattgttta      3240
     gggattcgtg tgaattattt aaatgacgga attgcacttg accaggaagc ctacatagaa      3300
     actatcctat cccggttcaa aatgcaagac tgcaaagctg ttgctactcc tatgaactct      3360
     tccataaagc taactaagga aatgtcgcca cagacagaag aagaaaagga agagatgtca      3420
     gcggtgcctt ttcaagaggc tgtaggttgc ctgatgtacc tagctcaatg caccagacca      3480
     gatatcctgt ttgcagttaa tcagctgagc cgatacaaca ataatcctgg atcgcgtcac      3540
     tggcaagctg taaaacatct tatgcgatat ctaagaggaa cggcatcgat gaaactcaaa      3600
     tattacagaa aaggtaacga acaaataact ggatattcag atgctgattg ggccgctgat      3660
     acagaagata ggaaatccac cagtggatat attttcttga tgcaaggagg agcggtgtca      3720
     tggtgttgca aacgacaacc aactgttgca ttatcaacct gcgaggcgga atacatggca      3780
     ttgtcagcag cggtacaaga agcatcgtgg tggaaaggat tgttagaaca atttggtaag      3840
     aagcaatcga ttcagatatt ttgtgataat cagagcacta tctgtattgc aaaaaatgga      3900
     ggatatacac cacgaacgaa gcatatcgat ataagacatc attacatcag ggatgctttg      3960
     gatcgaaatg ttgtgaatct ccattacatt aacactgaag aacaagttgc agatggtctt      4020
     acaaaagcat tacaacgaat caaacaagaa cgtaatcgac gatctatggg aattacacaa      4080
     caatcggctt aaggaggag                                                   4099
//
ID   Copia-6_AG-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Copia-6_AG_LTR.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-148
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1457-1457 (2010).
XX
DR   [1] (Consensus)
XX
CC   LTR consensus sequences from element Copia-6_AG. The LTRs are 149
CC   nucleotides long and present a very high degree of identity
CC   (p-dist=0,0033, ds=0,0038). In two of these sequences the 3? and
CC   5? LTRs are identical (Table 2) indicating that they have
CC   inserted recently and have not had time to accumulate mutations
CC   between the LTRs.
XX
SQ   Sequence 148 BP; 45 A; 21 C; 25 G; 57 T; 0 other;
     tattggaatt atagtaagcc gtatttgggt tatgagtaat ttaatcatag taacctatga        60
     atttgtgtag ttataagttt tggtatgaaa tacaattcat tctgtttcta accgtacacc       120
     aagctggttg acttcactac ttccaata                                          148
//
ID   Copia-6_BTa-I repbase;    DNA;    INV; 5152 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5152
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 578-578 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other. 2 copies in the
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(700..2763,2690..4786)
FT                 /product="Copia-6_BTa-I_1p"
FT                 /translation="MDTILASSGFSTITRLKGTSNYQIWKFEVKIFLEAAK
FT                 VYDVAVGNERKPLLDAENLKKWNDADAMARKVIITTIEKNLLTHILTSTSA
FT                 SDMWITLKNLFGKTTEQEKSSLYQELFGLNFVKNGNVMTFISKLEALFVQL
FT                 KSLEPGIQNEMLINKILQGLPDSYRNFKTGWDFLPAGSKTLENLKSKLLGE
FT                 HNREKSVKPEESVAFFGKEKRTCHRCKKVGHISRFCKVNINKNESKNFERN
FT                 ADQGNSSKQCGICKKTNHAESQCYFRTKNNNKDNNKNNNSDNNSKSEKQVA
FT                 FVAHENYDSHQYQKDTWIIDSGCTSHLTHNINILTSLVPVNTSVSSAKEDV
FT                 DIIVKTMGKVVTDKCVLNNVLFSPEVCVNLISVSSIVNNGGNVIFSKNGIK
FT                 VLKNGETIFEGKRGENGLFTVNLKSVIQNSAFFVKKGESIALWHRRLGHLC
FT                 LENLKKLANMADGISFSENQINKVRLTCDICPAAKQVRFSFGNKRTPATRL
FT                 LEIVHSDVCGKIQPSTFNNECYFVSFRDDFSAFTCIYLLKNKSDVFGMLQE
FT                 FVAFAERKHNLPVAKLRIDNGGEYNSNEIRKWCKDKGIELGYTPAHTPSLN
FT                 GESERLNRNICEKVRAMLFNSKLPKSMWGEAARVAAYLINRSPRNGSDKTP
FT                 YELWCGKKPNLKNLKVFGSRVFSKTTSYLKKLDSRLVSLKCSVRAFFRKLR
FT                 HTLKNLTAVLSACKEYIFIGYAEHGYRLFDPADSSVIVSQDVIFRENETVE
FT                 SLNADEVRVVLDNDLIGMLQPADADNEENANEENEKDQQGDRTLIETESED
FT                 IGSDDNTDWSEWLPGSDDTSASDVTVTELDESGRRYPERERAPPDRLNVGL
FT                 YASECDDFEPLTYSEAIKSKNSAEWTAAMQREFDSLKKNKTWILVDRPKNK
FT                 NVVKSKWVYKIKRDENNVAKMFKSRVVAKGFTQKFGVDYTQTFSPVVRHST
FT                 IRFLIALGAKLNLKIDHFDVTTAFLNSDLKEEIYMEQPKGTVAKGNENKVC
FT                 LLQKSIYGLKQASREWYELACTVLLSLGFKKSVLEVCVFFKVENIKILIIA
FT                 LYVDDFLVFWNDQAERDALQFNLLKHFAMKDLGEAKYCLGITIEQNKNTGE
FT                 IKLHQRQYIETILKNFNMTDCNPVSTPLEVNCVKTDFESSSKQIENVPYQN
FT                 LLGALMYLVVSTRPDIAFTVSYLSQFNNNPSEQNWKAAKRVLRYLKGTLDK
FT                 GIVYKPTNQKIEIIGFEKGRPCNVDLLGYSDSDYANDAKDRKSYGGFVYFL
FT                 ADGPVAWESKKQATTAVSSCESEYIALGEATKEACFFKNFFHELFTDREVK
FT                 ITLCSDNQGAIALSTNPGFHKRSKHIAVRHHFIHEKVKEKSLTLKHVPTKL
FT                 MVADILTKPLPKPAHQAHTNKLLK"
XX
SQ   Sequence 5152 BP; 1754 A; 921 C; 1053 G; 1424 T; 0 other;
     ggttatggtg cccagtcatc gcgtgtgttt ataaaacaat aaaattcgga aataatgaaa        60
     tcggtcgaaa aacaaaaatt tcaattcgag cagtccgcac tgcattcgtc ttgttcgttg       120
     cgttcagttg cgagtcgcgt taactgccga attttttgcg tgagtgatca tcatgggttg       180
     gttcggctcg gaaaaccatg aaaaccgcat aaacataaaa accgacttag acttacatga       240
     tattacgttg tacgtaattg tgtttctaat gatcttagtg ctaatagcat tctacatagt       300
     tcacaagtgt aaaaagcttg aaacaagaca tagggctctc gagctaagag tagctggtgc       360
     gcgagtttaa aaataaaatg cacttaaaaa taaataaggc tattaagaat taaaaaaatg       420
     tgttgtgcga gtcgcactta aaaaaattaa aaacggttaa aaaaaaaaaa aataaaataa       480
     aaaattaaaa attaaaattt aaaaaccctg attgctaaat agtgtttata aattttttaa       540
     gaattaaaaa cccaggtttc gttcgttttc tgttttgtgt tggtgtccaa tccgaaaatc       600
     ctgcggacaa ttttttgttt cgtgaataag cggacagttt atgttccttt tttttggttg       660
     atcagccctg atcataaaat ttataaaaat attaaaacaa tggataccat cctagcaagt       720
     tcgggttttt cgacgataac acgtctaaaa ggcacctcaa actatcagat ttggaagttc       780
     gaagttaaaa tttttttgga ggctgcaaaa gtttacgatg ttgctgtcgg aaacgaaagg       840
     aaaccactct tggatgccga gaacttaaaa aagtggaatg acgcagacgc catggcgcgc       900
     aaggtaataa taacaaccat tgaaaagaac ttgttaacgc acattttaac tagtacctct       960
     gcatcagaca tgtggattac actgaaaaat ctgtttggta aaactactga acaagaaaaa      1020
     agctccctgt accaggaact ttttggttta aactttgtta agaatggcaa cgtcatgacg      1080
     ttcataagca aacttgaagc cttgtttgta caattaaaaa gtctagaacc gggaattcag      1140
     aatgagatgc tcattaataa gatattacaa ggcctgccgg attcctacag gaacttcaaa      1200
     accggatggg actttttacc agccggcagt aagactctcg agaacttaaa aagtaagctt      1260
     ttaggagaac acaatcgcga aaaatctgta aaacctgagg aatcagttgc cttctttggt      1320
     aaagaaaaaa gaacttgcca tcgctgcaaa aaggtggggc acataagtcg tttctgtaaa      1380
     gttaatatta ataaaaatga gagtaaaaat tttgaaagaa atgccgatca aggtaatagt      1440
     agcaaacaat gcggaatttg caagaaaact aatcacgcag aaagtcagtg ttatttccgc      1500
     actaaaaata ataataaaga taacaataaa aacaacaaca gtgataataa ctcaaaatct      1560
     gaaaaacaag ttgcgtttgt tgctcatgaa aattatgata gtcatcagta ccaaaaagac      1620
     acctggatta tagattctgg ctgtacttcc cacttgactc ataacattaa catactgacg      1680
     tcattagttc ctgtaaacac gtctgtttca agtgcgaaag aggacgtgga cattatagta      1740
     aaaacgatgg gaaaagtggt aacagataaa tgtgtgttga acaatgttct tttctcgccc      1800
     gaagtgtgtg taaacctaat atctgtcagt agtatcgtga acaacggcgg caacgtcatt      1860
     ttctccaaaa atgggattaa agtgttaaaa aatggtgaaa ccatatttga aggaaagcgt      1920
     ggcgaaaatg gtctattcac cgtcaatttg aaaagcgtaa ttcaaaattc ggcctttttc      1980
     gtcaaaaagg gcgaaagtat cgctctctgg caccgtcgcc tcggtcactt gtgtctcgaa      2040
     aatcttaaaa aattggctaa catggcagat ggcatttcct tctcagaaaa tcaaataaat      2100
     aaagtgcgcc taacgtgtga tatttgtccg gcggcgaaac aagttcgttt ttcgttcggc      2160
     aataaaagaa cccccgcaac gcgccttttg gagatagtgc acagtgatgt ctgtgggaaa      2220
     atccagccat ctactttcaa caacgaatgc tatttcgtct cgtttagaga cgacttcagt      2280
     gcttttacgt gtatctatct gttaaaaaat aaaagcgatg tttttggcat gttacaagag      2340
     tttgtcgcgt tcgcggagcg taaacataat ttaccggtcg caaaactgag aattgacaac      2400
     ggcggagaat acaattctaa cgagataaga aaatggtgca aagataaagg tatcgaatta      2460
     ggatacacgc ccgcgcatac tccatccttg aatggagaga gcgaacggtt gaaccgtaac      2520
     atttgtgaaa aagtgcgtgc aatgctgttt aactcaaaat tgccaaaaag tatgtggggt      2580
     gaagccgctc gcgtcgccgc atacttaata aatcggtcac cgagaaatgg atcggataaa      2640
     accccgtacg agttgtggtg tggtaaaaaa cccaacttaa aaaacctaaa agtgttcggt      2700
     tcgcgcgttt tttcgaaaac tacgtcatac cttaaaaaac ttgacagccg tcttgtcagc      2760
     ctgtaaggaa tacatcttca taggatatgc cgaacacggc tatagacttt ttgatccggc      2820
     cgactcaagt gtgatcgttt cacaggatgt aattttccgc gaaaatgaaa cagtggaatc      2880
     actcaatgcg gatgaagtgc gcgttgtgct ggataatgac ctcattggaa tgttgcaacc      2940
     ggcggacgcg gacaacgaag aaaatgcaaa cgaggaaaat gagaaagatc aacaaggaga      3000
     ccgaactttg atagagacag aaagtgaaga cattggatcg gatgacaaca cggactggtc      3060
     agagtggctg ccaggctcgg acgatacaag tgccagtgac gtcactgtca cagagctgga      3120
     tgaaagtgga cgccgctacc cggaacgtga gagagctcct ccagatcgtc tcaatgttgg      3180
     tttgtatgcg agtgaatgtg atgactttga gcctttgact tacagcgaag ctattaagtc      3240
     aaaaaattca gctgaatgga ctgctgccat gcagcgagaa ttcgactcat taaagaaaaa      3300
     taaaacttgg atccttgtcg acagaccaaa aaataaaaac gtggttaaat caaaatgggt      3360
     ttataaaatt aaaagagatg aaaacaatgt tgccaaaatg ttcaaaagtc gtgtggtcgc      3420
     taaaggattt acccaaaaat ttggtgtaga ctacacacaa actttttctc ctgtagtaag      3480
     acactctaca attcgttttt taattgcatt aggtgcaaaa ttgaatttaa aaattgacca      3540
     ctttgatgta accactgcct ttctaaactc tgatttaaag gaagaaattt acatggaaca      3600
     acccaaaggt acagttgcaa aaggcaatga aaataaagta tgcttgctgc aaaagtcgat      3660
     atatggtctt aaacaggcat caagagagtg gtatgaactt gcatgtacag tactcttaag      3720
     tctgggattt aaaaagtcgg ttctagaggt ttgcgtcttt tttaaagttg agaatattaa      3780
     aatattaatc attgcattgt acgtagatga ttttttggtg ttttggaatg atcaagccga      3840
     aagagatgct ctacaattca atttgttaaa acattttgct atgaaagacc taggcgaggc      3900
     aaaatattgt ttaggtataa ccattgagca aaataaaaat accggggaaa taaaacttca      3960
     tcagcgtcag tacattgaaa cgatcttaaa aaactttaat atgactgatt gcaacccggt      4020
     tagtacccct cttgaggtaa actgtgtaaa aactgatttt gagtcaagta gtaaacaaat      4080
     cgaaaatgta ccatatcaaa acctattagg tgcactcatg tacttggtgg tcagtacacg      4140
     ccccgatatc gcctttaccg tcagttactt gagtcaattt aacaacaacc cctcagaaca      4200
     aaattggaaa gcagcaaaac gcgtgttacg ctacttaaaa ggtactcttg ataagggcat      4260
     tgtgtacaag cccactaatc agaaaattga aattatcggt tttgaaaaag gtagaccctg      4320
     caacgtcgat ctgctcggtt actccgactc agattacgcc aacgatgcaa aagatcgcaa      4380
     gtcatatggt ggctttgtct attttcttgc ggatgggcca gttgcttggg aaagcaaaaa      4440
     acaagcgaca actgcagtta gttcatgcga aagtgaatat atagctctag gggaagctac      4500
     taaggaagcg tgtttcttta aaaacttctt tcatgaactc ttcactgatc gtgaggttaa      4560
     aataacactc tgtagtgata accaaggagc gattgcctta tctaccaatc ctggttttca      4620
     caagcggtcg aaacacattg ctgttcgaca tcacttcata catgagaaag taaaagaaaa      4680
     gagtctcact cttaaacatg tccccacaaa actcatggtt gctgacattt taaccaaacc      4740
     tttgccgaaa ccggcacatc aggctcacac taacaagttg ctaaagtaaa aaccccaaac      4800
     aaattaaggg ggagcaagtc tactttttta tgtctattca tctactcctt ttatgttaat      4860
     ttaatttctt ttgtgttttt ttttttggtg gaattcgttc tttttttaaa aggttctttt      4920
     ttgactagct ttgactagat tcaaatgatg agtttctttg cccatgtttg gcatgactag      4980
     ttttaaatga tcctaagtat agccaagctt gcttagataa caaaaataaa actactcctg      5040
     taaactagat gttaaggaaa ataatgtgag gatgagatca ggatccctcg taaggggata      5100
     tggggaacca ttaaaaatta ataacctgct agatgtcatc attaactggg gg              5152
//
ID   Copia-6_BTa-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 603-603 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 227 BP; 60 A; 53 C; 29 G; 83 T; 2 other;
     tgttggaaac tgaaatttaa taactataac tctgacatct atgcasascc atgttaaatg        60
     cactgcttgc attctcgctc gcttattgcg tctaattttt cttctacgtg catttccttt       120
     tctcttaccg ttagtctgtc acgagatctc agtccaacga gtcaatgttt tataaataaa       180
     actctttcgt ccgaattccg aacttattgt tttacctacc aacaaca                     227
//
ID   Copia-6_Cfl-I repbase;    DNA;    INV; 4106 BP.
XX
AC   AEAB01017493;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_Cfl_;
KW   Copia-6_Cfl-LTR; Copia-6_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4106
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01017493; Positions    2729    6834.
XX
CC   Positions [1590-1991] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(117..1991,1995..4082)
FT                 /product="Copia-6_Cfl-I_1p"
FT                 /translation="MANEISAKHVTKFDGTNFLGWKFQMNALLVAHGIGDI
FT                 VNGTRVKPENNQSPESKNWIRDNAKAMFLLSSAMEYTQLENLLIYTTAKEM
FT                 WDNLIIIHERKSASNKLLLTQRFHAYRMETMDTVTQHIARIQNMARQLMDL
FT                 GENVSDVTVMAKILASLTPKYGNFQTAWESVDPARQTLEILKDRLIQEESR
FT                 LEEDNQDARALTAVTKKNSQRDNKQDPKRNEKRTQKEVKCYSCNEKGHFAR
FT                 ECPKRKRENSRNEKKRDKSSDCAFVASSKDGEKGAKSEKPQKVKLPSENAQ
FT                 KLLKEDASEMWLADSGASAHITYRREWLENYRPRKSGTISLGDNGLCNIIG
FT                 EGTVHIKRFINGEWREARIDNVLHVPEIKKNLFSIGACTAKGFKVIFDNEW
FT                 VKITRHSENFTIGVKQTNKVYRMLFRTSVIENDGEANVSTTSLKLWHERLG
FT                 HVNSRKELTNEGLATGVQVSHSREFFCDSCQLGKSHRLSFAKKCEERNTDP
FT                 GEFIHSDVSGPMQEASLGGARFFVTFKDDATGYRYVYFMKHKADVYERFKQ
FT                 FEGEVAAKYGRTIRVLRSDNGREYCNDNMRKYLTSLGIKHERTAPHTPEQN
FT                 GKAERDNRTIVECARTLIQAKDLPKFFVEAVNTAVYTLNRVSKANNDATTT
FT                 AYEAWTGRKPNLQHIRIFGSKAYMHVPKLFTKKFDARSKKVMVVEYEGESS
FT                 NYRLYDPTTKKVVVSRNVVVHEDANTSGEEYEDREVILPSQKGEQNEEVAT
FT                 EDAYSEQESPQEDSPELQSRQLQNRATLKKPVRFQANVAVYEIPIDYKKAL
FT                 KSENKKEWINAINDELRAHEKNCTWTLIPRKPNMKIIDSKWVFKVLRDEEG
FT                 EVWRFKARLCARGFQQREGIDYTETFSPVVRYDSLRVLLAHTTLEDMELVS
FT                 FDVQTAFLYGDLTEKIYMEVPEGVNLSGSSDSSDDCQSRKIVCVLNKALYG
FT                 LKQAPRCWNNKFKTFLRKFDLKETEADKCVFVGNVRQQTVYLTIFVDDGLI
FT                 ACRSKEVLSSIIKELSYEFDITIGDANMFVGMQINRDRKRKSTFINQSAYV
FT                 KTVLKKFGMNDAKAVSVPADPNVILKPVQSENECESHVPYREIVGSLMFLA
FT                 TVTRPDIAFAVNNLSKFVNKHDKTHWQAAKRVLAYLAGIVDIGIEYSLSGN
FT                 ESKLVGYSDADFANDLETRRSTTGYIFCMANGPVTWSCQRQKLVTLSTTEL
FT                 EYVAAASASRELIWLRKLLNGIGSQCDDATMLHVDNQSTIKLAKNPEFHKR
FT                 TKHIDIRYHYLRERYENGEIYITYIPTEMQKADILTKALPRERFKFLCECL
FT                 SLVKGEYTN"
XX
SQ   Sequence 4106 BP; 1454 A; 791 C; 965 G; 896 T; 0 other;
     ggttatggac ccagttctac gggaaaagtg aaaagactag tgaagcaaac atcaagcaag        60
     tggttgttcc tacttcgagt gcttaaacct acgtgagtcg taaacccgaa ttcaatatgg       120
     cgaatgaaat atcggcgaag catgtaacga aattcgacgg aacaaacttt cttggatgga       180
     agttccaaat gaacgctcta ctagtagcac acggaattgg cgatatagtc aacgggacta       240
     gagtcaaacc cgaaaacaat cagtctcccg aaagtaaaaa ttggatcaga gacaacgcca       300
     aagcgatgtt cctattgtcg tcagcaatgg aatatactca actcgagaat ttgctgatat       360
     acacgaccgc gaaagagatg tgggacaatc tgatcatcat tcacgaacgc aagtcggcgt       420
     cgaataaatt gttacttacg caacgttttc acgcgtaccg catggagaca atggacaccg       480
     tgacgcaaca catcgcgagg attcagaaca tggcgcgaca actcatggac ttgggagaga       540
     acgtgtccga tgtaactgta atggcgaaaa tcttagcgag tctgacaccg aagtatggaa       600
     actttcagac cgcatgggaa agtgttgatc ctgctcgaca aacactggaa atactaaaag       660
     atcgactaat ccaagaggag agcagactag aagaagataa tcaggatgcg agagcattga       720
     cagccgtgac aaagaaaaat tcacaaagag acaacaaaca agatccgaaa agaaacgaaa       780
     aacgcacaca aaaggaagtg aagtgctaca gttgtaacga aaaaggacat tttgctcgcg       840
     agtgcccgaa acgaaaaaga gaaaatagcc gaaacgagaa aaaacgagac aaatcaagtg       900
     actgtgcatt tgtggcaagc agcaaagatg gagaaaaagg cgcgaaatca gaaaagccgc       960
     aaaaagtgaa gttaccaagt gagaatgcgc agaaactctt aaaagaagac gcgagtgaga      1020
     tgtggttggc tgacagtggg gcctcagccc acattacgta tcgccgcgag tggttagaaa      1080
     attaccgacc gaggaaaagt ggcaccattt cactaggcga taatggatta tgtaatatta      1140
     tcggcgaagg aacagtacac ataaaaaggt ttataaatgg cgagtggcgc gaagcgcgca      1200
     tagacaatgt tctccacgtg ccggaaatta agaaaaatct tttctccatc ggtgcgtgta      1260
     ccgcgaaagg atttaaagtg atctttgata acgagtgggt caaaattacg cgacacagtg      1320
     aaaattttac aatcggtgtg aaacaaacga acaaagtata ccgaatgctt ttccgcacga      1380
     gtgtgataga gaacgacggt gaagcgaatg tatcaacaac cagtctaaag ttatggcacg      1440
     aaagacttgg acacgtaaac tcgcgtaagg aactcacgaa cgaaggactt gcgaccggcg      1500
     ttcaagtgtc tcattcaaga gaatttttct gtgattcgtg tcaattaggg aaatcacaca      1560
     ggctttcgtt tgccaagaag tgtgaagagc gcaacacgga ccctggtgaa ttcatccaca      1620
     gcgacgtcag tggtccaatg caggaagcat ccctcggagg tgcgaggttc tttgtaacgt      1680
     tcaaggacga cgcgacaggg tatcgctacg tttactttat gaaacataag gccgatgttt      1740
     acgaacgatt caaacaattt gagggtgaag tcgcagcgaa atatgggagg acaatacgag      1800
     ttttacgatc ggacaacggg cgcgaatatt gcaacgataa tatgagaaag tatctcacat      1860
     cgctcggtat aaaacatgag agaaccgcac cgcacacgcc ggaacagaat ggtaaagccg      1920
     aacgcgacaa cagaacgata gtcgagtgtg cacgaactct catacaagcc aaggatctac      1980
     caaaattttt ctaggtggaa gcagtaaaca cagctgtgta cacactaaat cgggtatcga      2040
     aagcgaacaa cgatgcgaca acaacagcgt acgaagcatg gaccggaagg aaaccaaatc      2100
     tacaacatat aagaattttt gggtcaaaag cctacatgca cgtgccgaaa ttattcacga      2160
     agaaatttga tgcgaggtcg aagaaagtaa tggtcgtaga atatgaagga gaatcgtcaa      2220
     attacaggct ctacgatccc actacgaaga aggtcgtcgt atcaaggaat gtggtagtac      2280
     acgaagatgc caatacatcc ggagaagaat atgaagatag agaagtaatt ctaccaagtc      2340
     aaaaaggtga acaaaatgaa gaagtcgcga cagaagatgc gtacagcgag caagagtcgc      2400
     ctcaagaaga ttcgccagaa ctccagtcaa gacaattgca aaacagggca acattgaaga      2460
     agcctgtccg ttttcaggca aacgttgcag tgtacgaaat tccaattgac tataagaaag      2520
     ccttaaagag cgaaaacaaa aaagaatgga tcaatgcaat caacgacgag ctcagagctc      2580
     atgaaaagaa ctgcacatgg acactaatac ccaggaaacc caacatgaaa atcatcgatt      2640
     caaagtgggt attcaaggtt ttacgagacg aagaaggtga ggtttggcgc ttcaaggcga      2700
     gattatgtgc aagaggcttt caacaacgcg aaggcatcga ctacacggaa acattctcac      2760
     ctgtagtgag gtacgactct ctacgagtac tactggcgca cacaacacta gaagacatgg      2820
     agctagtgtc ttttgacgtc caaacagcgt tcctctacgg cgatttgaca gagaaaatct      2880
     acatggaagt tcccgaagga gtgaacttga gtggttctag tgatagtagt gatgattgtc      2940
     aaagcagaaa aatagtatgt gtgttaaata aggctctata cggtctgaaa caggctccaa      3000
     ggtgttggaa caataaattt aaaaccttct taaggaaatt cgacttaaaa gagaccgaag      3060
     ccgacaaatg tgtttttgta ggtaatgtta ggcaacaaac tgtatatctg acgatctttg      3120
     tagacgacgg actaatcgcg tgtagatcta aagaagtcct gagttcaata atcaaagaat      3180
     tgagttacga atttgatatt acaataggtg atgcaaatat gtttgttggt atgcaaataa      3240
     atcgcgatag aaaacgcaaa agtactttta taaatcaaag cgcgtatgtg aaaacggtac      3300
     ttaaaaaatt cggcatgaac gacgccaaag cagtgagcgt gcctgctgat ccaaatgtta      3360
     ttttaaaacc tgtgcaatcg gaaaatgagt gcgaaagtca tgtaccatat cgcgaaatag      3420
     ttggatctct tatgttttta gctacggtaa cgcgaccaga catagctttc gcagtaaata      3480
     atttaagtaa atttgttaac aaacacgaca aaactcattg gcaagcggca aaacgagttc      3540
     tcgcatattt agccggaatt gtagatatcg gtatcgaata tagtctcagc ggaaacgaga      3600
     gtaaactagt aggatactct gatgcagact tcgcaaacga tctagagaca cgaagatcta      3660
     caacgggcta cattttttgc atggcaaatg gaccagtcac atggtcatgc cagcgacaaa      3720
     agcttgtaac acttagtact actgaattgg aatacgtggc agcagcttca gcttctagag      3780
     aactaatctg gctgcgaaaa ttgttaaatg gcatcggaag tcaatgtgat gatgctacta      3840
     tgcttcatgt tgacaaccaa agcacaatta aattggccaa gaatcctgag ttccacaaaa      3900
     gaaccaaaca tattgacatc cgataccatt atcttcgaga aagatatgaa aatggcgaaa      3960
     tttacattac atatattcct actgaaatgc aaaaagcgga tatactgacc aaggctcttc      4020
     ctcgtgaacg atttaaattc ttgtgcgaat gtctgagttt ggtcaaagga gaatacacta      4080
     attagagatt aaaaaaacgg cggaag                                           4106
//
ID   Copia-6_Cfl-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   AEAB01017493;
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_Cfl_;
KW   Copia-6_Cfl-LTR; Copia-6_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (22-MAR-2011).
XX
DR   Genome; AEAB01017493; Positions    2494    2728.
XX
SQ   Sequence 235 BP; 53 A; 42 C; 56 G; 84 T; 0 other;
     tgttaaagta agttttatta atctctacga gagcgcgccg tagcgcgacg cattggatta        60
     gtgtggagtc gcgagattga gctactatct atttttagtt atggcgctga gagtgttgca       120
     cgtcgttttt ttttgttagt tcgtacgcgt ccttcaacga gtagtcccgg tcttcgtgta       180
     tgagtctttt caaaccttca ctgtgtgtgt gaatattata atacaaagtt caaca            235
//
ID   Copia-6_CoFl-I repbase;    DNA;    INV; 6685 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6685
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2269-2269 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           952..6471
FT                 /product="Copia-6_CoFl-I_1p"
FT                 /note="gag, integrase, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MRLFQLGVDICGEDLVRDLSVRLEDGLILFANKKESI
FT                 AAISKGNFKPSEFDKISRTIRNSGGVISLSAKRTENSQVPKFLDALDFSPG
FT                 YSKKALFKTTEIQKTELLTDKRTDDESFDEMHFGNYHDRVLKEKSASSTIS
FT                 GKPKIIKNENVNFKYDREKDKLVTQRQVINNYSRQAIDKNELLVRRSAAAE
FT                 ERDSLRRRIGWLEERQRAEHQSAVQTTTEAAARIRALEEAVATMSRLSERL
FT                 EHFMTAQEVGQSNFGIDALNSTAIPSPNQNRKHKIDPLSERTLNRALHDRT
FT                 TDLDRSERFQLELLNKDSPSRYDYKLTPKTKIELFLDKLFSELKIKKLLYV
FT                 LDDTVEFPTFLSAKELDDHKERVRHVIINHIDDFYHLKTAHYSDPKELLNK
FT                 LKEIKRNESNLSSNEIRRKLYTFRYLPNKMTGSDFVDKFEELLRSYENLQG
FT                 RQPLSEEEIRDAFYNAVVNNVSQIETLDAVIEDAQGKRMTYDRLKSFFLKT
FT                 ESRRQRTGAAGGTAPATALRVHQPNSTHDNERCYRCDDYGHHSYNCPVDAG
FT                 MRKCYSCGRLQRNLMEHKKNCRGXKSGEKKNLNWDFKRRENKDGQGSKNST
FT                 NKRGKREHDSENNNQNKRQKRDSDKTSKNESKTKRQSGNTNDKKGKTVFKQ
FT                 SDIASSLFSSSANKLKTDNYNLVKFIADSGATDHLVNSRLVFKSLNCNKTG
FT                 KIKCANSNPLADLKTEGEGTIVGKNNNHDLTLNNVICSESLSENLLSLRKF
FT                 VDSGLAIYLDNNKIDIFDPTSNESFITGVYRQPYWLVELNVHNKDKNKFDR
FT                 KFAYLVTNGSGEPRYNTRSKAITKDSEQDRDLSKNVEQEEAIGNPLALHPI
FT                 ESCLDNSVNDRKLLNPNKISVDNTPINDSYRTLEKTSPIDEAILWHVRLGH
FT                 ASLAYLKAFQKKFPNCKDLKKVIFDDSIANCDVCSKAKFNKLPAKTVRVRS
FT                 TAPLQIIHSDTMGPISPTSYPKRYKFVSVFVDDYSRMAMAYPMKAKSDTGI
FT                 CLENFVRSARNILGYDAKFCYLRSDQGTEFTGGHTREVLKELGAELQLASP
FT                 DTPEHNGTAERFNQTIAKKTRVYMFDSGLPENMWDLALSAAVYAYNRTPHR
FT                 SNGMEIPLVKFAPHKDLNIEQLKRFGCLGYMKIQRNSGPKFSPLAQRIVLV
FT                 GYTATGFILMKPEDGKFYESKDVRFNERLVYKDRYLKNDIVNWELVTRTVD
FT                 NDSWLLKFDEETEESTKTKGEIVKRKRGRPPKTSGSGNTEELLPVKRQKLI
FT                 HDTSFTGLQVPHDSNNQIRFGQENFNEEDCSVDQNQDEVYHALLAEIYKDP
FT                 TNYQDALKSKNNAEWRKAIEEELKSMNDNLVWKIVNKPMSDSKGRKPNIID
FT                 SRWVLKRKEDNSGNIKYKARLVIRGFKDRNQYDLLETYAPVSRLAVIRVLL
FT                 AVINKYNLETRQLDVKTAFLNGTLNDDIYMEIPDGVPCAQELRKTKVCKLE
FT                 RSLYGLKISPKRWYERFSETATKIGLQEHPSEPCLFIWRCAGKFLFLILYV
FT                 DDMLMASNDVDKLTEVSDKLKAEFEMTDLGEANNFLGIQIDRDRRNQTIRL
FT                 TQDKYTNKILQRFGFDNARQCKTPMVTRQVINQQRRDREESGNEEEQSVNR
FT                 PEDFPYREAVGSLLYLANTVRPDISYAVNVLSRHQINPTEEDRQMVKRVFR
FT                 YLNGTRKKGLTFKGSTEIMTAYSDASFADCKDSHTTSGYVIKLFGDSVSWR
FT                 THKQTYVSLSTCQAEYIAMSEACQELMALRNTLTAVLNIALYPMTVWCDNK
FT                 AAEASAKSYGGTKLRHMSSVREHYVKECAKYGFIEIKWIASKEQIADIFTK
FT                 ALPIELHERMTAKLLNDC"
XX
SQ   Sequence 6685 BP; 2231 A; 1319 C; 1566 G; 1567 T; 2 other;
     ggttatgggc ccagcacgct tccactgcgc ggggctttct ttgtgatata agggacttgc        60
     gccgggattg acgcgttttt tattttccat ctagcaactg ctaaaatgag tgaaagtgga       120
     gaagcagcgt gccagtaaat gagatcgggg tcgaggcagg gtgccagtga atgagatcgg       180
     ggtcgaggca gaggcgccag tgaacgacgg cgagacgtcg gccaacgaca gcgaggtggc       240
     ctcacctggg ttagaaggtg cggcggaagg cgtggaggag gcacgagcag tgtcaccgct       300
     cgaagaggcg acaaggatgc aaggacagga ggaaagaggc aggactatga aggacgcagc       360
     atgccaaggt aatagtgagt cctgagttgt aattgtgtta aggggcagtc atttttcgta       420
     attgaaattc gtagccctct ttggctgggc atagccccgg aagaggaggt gagcgagcgc       480
     acggacggat gggcagcgct gtccgtggtt gctgttgcgg acggccgagg cgccgggttg       540
     agaccgggga cgcctagcca cacctgtgtg ccagaacgcc gtcaccgcgg cgcaatcatg       600
     gcggtcggct cgtttctttc ctctttgtag tctcgtggtg cgcgcgcatg tgttgtgttc       660
     acatatgtgt gtgcatgtac gagcagctca tgcgccatct tttcttcctt taattatatc       720
     ccgacgtgcc gaactgtatg tgttctacgg tttacgtatg cgcgggaaag gggcggccca       780
     acctgcctgc tcttcgcgcg caaagtggtc acgtgtgctg tgtgcgtgaa caactgtgtc       840
     tcgttgtttg cgcacgcttg tacatttcca tttgtatctc ttcttggaac taaacagtta       900
     aacttacgta atgacggctt tattttagat gaagatgtga tcgacgcgta tatgcgactt       960
     ttccaactcg gtgtggatat ttgcggagaa gatctcgtaa gagatttatc tgtgagatta      1020
     gaagacggat taattctatt tgcaaataag aaagaatcga tcgcagccat ctcaaagggt      1080
     aactttaagc cctcagagtt tgacaaaata tcacggacaa ttagaaactc tggcggcgtt      1140
     atatccctgt ctgcaaaaag gactgaaaat tcgcaagtcc caaaattttt ggacgcgctt      1200
     gatttctcgc ccgggtattc aaagaaagca ctgtttaaaa cgacggaaat acaaaagact      1260
     gaacttctga ctgataaaag gacggacgat gagagttttg acgaaatgca tttcggtaat      1320
     tatcatgaca gagttctaaa agagaaatca gcgagttcaa ctatctcggg aaagccgaaa      1380
     ataataaaga atgaaaacgt taattttaaa tacgacagag aaaaagataa actggtcact      1440
     caaagacaag ttatcaacaa ctactcaaga caggcaattg ataaaaatga acttttagtt      1500
     agaaggagtg cggccgcgga agaaagggac agcctgagac gtcggattgg ctggcttgaa      1560
     gaacggcaga gggcggagca ccagagtgct gtacagacca cgaccgaggc cgccgcccgt      1620
     ataagggccc tagaagaggc agtggcgaca atgtccaggt tgtccgaacg actggaacac      1680
     tttatgacag ctcaagaggt aggtcaatca aattttggaa tagacgcatt aaactctact      1740
     gcaatacctt caccaaatca aaatcgtaaa cacaaaattg atccactctc ggaaagaacc      1800
     ctaaatcgag cactgcatga cagaacgact gatcttgatc ggagtgaaag gttccaactc      1860
     gaactgttga acaaggactc accgtcccgt tatgattata aattaactcc taaaacaaag      1920
     atagaattgt ttctcgataa attattttca gaattaaaaa ttaaaaaact actgtacgtc      1980
     ttggatgata ccgttgagtt tcccacattt ctgtctgcaa aagaattaga tgatcacaaa      2040
     gaaagggtac gacatgttat aatcaatcac attgatgact tttaccatct aaagactgcc      2100
     cattattccg atcccaaaga actgctaaat aaattgaaag aaatcaaaag aaacgagtca      2160
     aacctatcgt caaatgaaat cagacgaaag ctgtatactt ttcggtatct ccccaataaa      2220
     atgacagggt ccgatttcgt tgataagttt gaagagcttc tcagaagcta cgaaaatcta      2280
     cagggaagac aacccttgtc tgaagaagaa atacgtgacg cgttctataa tgccgtcgtt      2340
     aataacgtat cgcagattga aaccctcgac gctgtgattg aagatgcgca agggaaaagg      2400
     atgacttatg accgattgaa atctttcttt ttaaagacag agtcgagacg acagaggacc      2460
     ggagctgctg ggggaactgc gcctgcaaca gcgctacggg tgcaccagcc caactcaacc      2520
     cacgataatg agcggtgtta tcggtgcgac gactacgggc accactctta taactgcccg      2580
     gtcgacgcag gaatgagaaa gtgctactcc tgcggaaggc ttcaacggaa cctcatggag      2640
     cataagaaaa attgcagggg tgscaaatca ggtgagaaga aaaatttaaa ttgggatttc      2700
     aaaagacggg aaaacaaaga cggacaagga tctaaaaatt caacgaataa aaggggaaaa      2760
     agggagcatg acagtgaaaa taacaaccaa aacaaaagac agaaaaggga cagtgataaa      2820
     actagtaaaa atgaaagtaa aacaaaaaga caaagtggaa acacaaatga caagaaaggt      2880
     aagactgttt ttaagcaaag cgacatcgcc tcttcgctgt tttcaagttc tgcaaataaa      2940
     ttaaagaccg acaactacaa tctagttaaa ttcatcgcgg actcaggagc gaccgaccac      3000
     ttggtcaact ctcggctagt atttaagagc ttaaattgta ataagacagg caaaattaag      3060
     tgtgcgaata gtaatcctct ggcagacttg aaaacggagg gagaaggcac catcgtcggt      3120
     aaaaataata accatgatct gacactgaat aatgtgatct gctctgaatc cttgtcggaa      3180
     aacttacttt ctttgagaaa atttgtggat tcaggcctgg ccatatacct cgataataac      3240
     aaaattgata tatttgaccc gacttcgaac gagtcattca tcacaggagt ctatcgacag      3300
     ccatactggc ttgttgaatt aaatgttcac aataaagata aaaacaaatt tgacaggaaa      3360
     tttgcatatc tagtgacgaa tggctcgggt gaacctcggt ataatacacg aagcaaagct      3420
     ataacaaaag acagtgaaca agacagagac ttaagtaaaa atgtcgagca agaggaagct      3480
     attggaaatc cgttggcact acatcccata gaatcttgcc ttgataactc agtcaatgac      3540
     cgtaagcttc tgaatcctaa taaaataagc gtggacaata cacccattaa tgacagctat      3600
     agaactcttg aaaaaacaag ccccatcgac gaggccatcc tatggcacgt gagattgggg      3660
     catgcttccc tcgcttacct aaaggcattt cagaagaaat ttccgaattg caaagatctg      3720
     aagaaagtca tatttgatga cagtatagct aattgtgatg tatgctccaa ggcaaaattc      3780
     aacaaacttc cggctaagac agttagagtg agatccaccg ctcccctcca aattattcat      3840
     tcggatacca tgggtcccat aagtccaact tcatacccca aacgctacaa gtttgtgtca      3900
     gtgtttgtgg atgattattc aagaatggcc atggcatatc caatgaaagc taaaagtgat      3960
     acagggattt gcttggaaaa ttttgtccgg agcgccagaa acatcttggg gtatgacgcc      4020
     aagttctgct atcttaggtc tgaccaaggt acggaattca ctggtggcca tacccgagag      4080
     gtcttaaagg aactgggggc cgaactgcag ctagccagcc cggatacacc ggagcacaac      4140
     gggacggcag aacgattcaa ccaaacaatc gcaaagaaga caagagtcta catgttcgac      4200
     tccggtctcc cagagaacat gtgggacttg gctctgagtg cagcagttta tgcttacaac      4260
     cgaacacctc acaggtcgaa tggaatggaa attccgttgg taaaatttgc accgcataag      4320
     gatctcaata tcgaacaact gaaacggttt gggtgcttgg gatacatgaa gattcaaaga      4380
     aattccggcc cgaagttcag tccgttagct caacgaattg ttctagtggg atacacagcc      4440
     acaggattta tcctgatgaa acctgaagac ggaaaatttt atgaaagcaa agatgtgaga      4500
     ttcaatgaac gactggtata caaagacaga tacctgaaaa acgatatagt gaattgggaa      4560
     ttagttacaa ggacagttga taacgacagc tggctcctga agttcgacga agagacggaa      4620
     gagagcacaa aaacgaaggg agaaatcgtc aaacgaaaga gaggacgacc gccgaaaaca      4680
     tctggttcag gaaatacgga agagctmtta ccagtgaaac gacagaagct aatacatgac      4740
     actagtttca caggactgca ggtcccccat gattcaaata atcaaatcag atttggacag      4800
     gaaaatttta acgaagaaga ctgctctgtg gatcaaaatc aggatgaagt atatcatgca      4860
     ctgttagcag aaatttacaa agatccaacc aactaccaag atgctctgaa gagcaaaaac      4920
     aacgcagaat ggcggaaagc tatagaagaa gaactgaagt cgatgaacga caaccttgtt      4980
     tggaaaattg taaataaacc aatgagtgat agcaaaggca gaaaaccaaa tataattgac      5040
     tcccggtggg ttctgaaaag gaaagaagac aactctggaa acataaaata taaagccagg      5100
     ttagtgatcc gtggatttaa agacagaaac caatatgatc tgttggaaac ttatgctcca      5160
     gtctcaagac tagcagtaat tcgagtctta ctggctgtca taaacaaata taacttggaa      5220
     acacgacagc ttgatgtgaa gactgccttc ttgaatggta cactgaatga cgatatatac      5280
     atggaaatac cagatggtgt tccgtgtgct caagagttaa gaaaaaccaa agtttgcaag      5340
     ttggaaagat ccctgtacgg tcttaaaatt agtcccaaac gctggtatga gaggttttca      5400
     gagactgcca caaaaatagg actccaggaa cacccaagtg agccctgtct tttcatatgg      5460
     agatgtgctg gcaaattttt atttttgatt ctgtatgtgg atgatatgct gatggcaagc      5520
     aacgatgtcg ataaacttac agaagtgagt gataagctta aagccgaatt cgaaatgaca      5580
     gatctagggg aagcaaataa tttcctggga atacaaatcg acagagacag aagaaatcaa      5640
     accattcgtt taacccagga caaatatacg aacaaaatac tgcagaggtt tggtttcgac      5700
     aatgctcgac agtgcaagac acctatggtg acgagacaag tcataaatca gcaacgaaga      5760
     gacagagaag aatctggaaa cgaagaagag caaagtgtga ataggccaga agatttccca      5820
     tatcgagaag cagtcggcag tttgctgtac ttagcaaata ctgttcgacc tgatatatct      5880
     tatgcagtga acgtattaag tagacatcag atcaatccca cagaagaaga cagacaaatg      5940
     gtcaagagag ttttccgtta cctcaatggt actagaaaga aaggactgac ttttaaagga      6000
     agcacagaaa tcatgacggc ttattcggac gcaagtttcg cagattgcaa agattcgcat      6060
     acgacgagtg gatacgtcat aaaactattt ggcgactctg tatcttggag aacgcataaa      6120
     caaacttacg tctcgttatc aacctgccaa gctgaatata tagctatgag tgaggcatgt      6180
     caagagctca tggctctaag aaacactttg acagctgtgc taaatatcgc actttatcct      6240
     atgactgtgt ggtgtgacaa taaagcagcc gaagccagcg ccaagtccta tggaggaacc      6300
     aaacttagac acatgtcatc agtgcgagaa cattatgtga aagaatgtgc taaatatggg      6360
     ttcatagaaa tcaagtggat tgcctctaaa gaacagattg ccgacatttt tactaaagct      6420
     ttaccgattg aattgcatga gagaatgact gcaaaattac taaatgactg ttaggactac      6480
     acgacagtga atctcgttta atcaatagaa tctaatcctt atggtttgaa ttctgtttta      6540
     ggtaacaaca atcagtgagc agactacaaa gacctgaaga aaagcgagat tgaggctgac      6600
     tcattgatac attttattta ttctttttat attacttatt tcttataacc gtccagagat      6660
     aggcgctcca ttaaactgaa gggag                                            6685
//
ID   Copia-6_CoFl-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-288
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2290-2290 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 288 BP; 77 A; 62 C; 54 G; 95 T; 0 other;
     tgttagaata agagtttgta taaagcgcca tctctgctag tatatatgta ctatgcatac        60
     gcgagccccg atgctgcgca tcaggccagt tcagttgatc gctagtccct agccagtaaa       120
     gacttatttt gtaacaacag cttgtaaaga cggtattacg acagtttatt ctaaataata       180
     ataattctga tttctctaca aagtgtttag tgcttttccc ttcttgttat ccttcctggc       240
     tttttcccga atcctgagag cctcgcgcag tggacttaaa agtcaata                    288
//
ID   Copia-6_CQ-I repbase;    DNA;    INV; 1839 BP.
XX
AC   AAWU01041312;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_CQ_;
KW   Copia-6_CQ-LTR; Copia-6_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1839
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 327-327 (2011).
XX
DR   Genome; AAWU01041312; Positions    6230    4392.
XX
CC   'GACCG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..1839
FT                 /product="Copia-6_CQ-I_1p"
FT                 /translation="METNGVVAGVPLFVGSNYRSWKCRMLAVLDEHELEEC
FT                 IQQEAAEVEELKVKEEDSTAQKEVKLKALEKRKKKEKRCRSFLLSRLDDDH
FT                 VEQVQDKSTPREIWLALAAMYERQSLAKRLHLKQELILLRQGGDTLREHFT
FT                 KFDRIIRELKSTGATIDELDVICHLLLTVNPRFEMVVTSIQTVPERDLSLE
FT                 FVKCRLLDEETRKNSSESVGVKTGEAAFSGTSALKSQQQKKKKAFKCFVCG
FT                 KEGHKAADCPEKKSDETKASARYGSSDDEVCFVGMEKLPELREVSWIVDSG
FT                 SSEHIAKDRELFEELVPLKNPVTIAVAKKGKSIVAEHRGVIRLTSAVDGKT
FT                 IPIALKDVLYTPEASANMLSVRKLDERGLKVVFSSGTVSIKQEERTVAIGK
FT                 QSGRLYLLVLHERGPGRVPEDPEGCCEGGSDEAEKTKPQRGRSKREPKQDK
FT                 KAYTGFALSAADFAPVALSEIEEQPDVSRKKTAGSARKPDGGAAETFLEVC
FT                 VPAATKIKEKLRTEKMRARHRRASGAGHGQGAGETCCEGRPKEDHRGQEGN
FT                 RPGAGGCRGCADSAGADHCDPVASRGTWRLPGLSGG"
XX
SQ   Sequence 1839 BP; 444 A; 392 C; 672 G; 331 T; 0 other;
     ggttatgagc ccaggttgcg cgagtgccga aaagttgttt ttcgcggcgt tttagtgagt        60
     gaagtttgga agttggtgga acggattgag gatggagacc aacggcgttg ttgcgggggt       120
     gccactcttc gttggctcga actaccggtc gtggaaatgc cggatgctgg ccgtgctgga       180
     cgagcacgag ctggaagaat gcatccagca ggaggcggcg gaagtggagg agctgaaggt       240
     gaaggaggag gactcaacgg cgcagaagga ggtaaagttg aaggcgttgg agaagaggaa       300
     gaagaaggag aaacggtgcc ggtcgtttct gctttcgcgg ctggatgacg accacgtcga       360
     gcaggtccag gacaagtcga cgccgaggga gatttggctg gccctggctg cgatgtacga       420
     gcggcaaagt ttggcgaaac gtttgcacct gaagcaggag ctgattctgc tgcgccaggg       480
     gggcgacact ctacgggagc acttcacgaa gtttgaccgg atcattcgtg agttgaagtc       540
     tactggagcg accatcgatg aactcgacgt catctgtcat ctgctgttga cggtgaatcc       600
     gaggttcgag atggtggtga cgagcattca gacggttccg gagcgagatt tatcgctgga       660
     attcgtcaag tgccgtttgc tcgacgagga gacgaggaag aactccagcg aatcggttgg       720
     tgtgaagacg ggggaagcgg ctttctcggg aacgagtgcg ctgaagtcgc aacagcagaa       780
     aaagaagaag gcgttcaagt gttttgtttg cggaaaagag ggccataaag ctgcagactg       840
     tccggagaag aagtccgacg agacgaaagc gagcgcacgc tacgggtcga gtgacgacga       900
     ggtgtgcttc gtcggcatgg agaagcttcc ggagctgcgg gaggtgagct ggatcgtgga       960
     ctctggttca tcggaacaca tcgccaagga tcgtgagttg ttcgaggagc tcgtgccgct      1020
     gaagaacccg gtgacaatcg ccgtggcgaa gaaggggaag tcgatcgttg ctgagcatcg      1080
     tggcgtgatc cgtctgacct cagccgtgga cggaaagacg atcccgatcg cgctgaagga      1140
     cgttctgtac accccggaag ccagcgcgaa catgttgtcg gttcggaaac tggacgagcg      1200
     cggactgaag gtggtgttca gttcgggaac agtgagcatc aagcaggagg agagaactgt      1260
     ggcgatcgga aagcagtcgg ggaggctgta cctgctggtt ctacacgaac gtggaccagg      1320
     tcgcgtgccc gaagatccgg agggatgctg cgagggcgga agtgacgaag cggagaaaac      1380
     caaaccacaa cgaggtcgaa gcaagcgaga accgaagcag gacaagaagg cgtacacggg      1440
     cttcgccttg agtgcagctg acttcgcccc tgttgcgttg tcggaaatcg aggagcagcc      1500
     tgacgtatcg aggaagaaga ctgctggttc tgcgcggaag ccggatggcg gagcggcaga      1560
     aacgtttttg gaagtctgcg tccctgcagc aacgaagatc aaggagaagt tgagaacaga      1620
     gaagatgcga gcgaggcatc gacgagcgag tggagcagga cacgggcaag gagccggtga      1680
     gacctgctgc gaaggaagac cgaaggaaga tcatcgaggt caagaaggta atcggcctgg      1740
     agcaggcgga tgtcgtgggt gtgctgattc agcgggggct gatcattgtg atccggtggc      1800
     atcgcgcggg acatggcgac tcccaggatt gagcggggg                             1839
//
ID   Copia-6_CQ-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   AAWU01041312;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_CQ_;
KW   Copia-6_CQ-I; Copia-6_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 328-328 (2011).
XX
DR   Genome; AAWU01041312; Positions    4391    4170.
XX
SQ   Sequence 222 BP; 60 A; 66 C; 43 G; 53 T; 0 other;
     tgttgagatg aacaaccctg tagtcgtcat cgagtcgacc tagtcggccg aaccccctgt        60
     cgacctcacg cgcagctgtc agagctgcaa aacaacaaca acaaatgtgt tgcgtcatcc       120
     gttacaaaag cacgcggttc aataaagtcc tccagtttag ttttgttaaa ctacgcgttt       180
     ttctccggaa caaatccgac caacctgcca ctctgctcat ca                          222
//
ID   Copia-6_DAn-I repbase;    DNA;    INV; 4017 BP.
XX
AC   .
XX
DT   29-OCT-2011 (Rel. 17.03, Created)
DT   29-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DAn_;
KW   Copia-6_DAn-LTR; Copia-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4017
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 301-301 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1475-2005] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1388..3988
FT                 /product="Copia-6_DAn-I_1p"
FT                 /translation="MVKEHMVNGLKSNFENHDVCEICAKCKISGKKFPKAS
FT                 ESRAKDILGLVHTDICGPVNQASIGGARYFATFIDDKSRYVFVYFLKSRDE
FT                 ILEKFKEFKTLAENQTGKRLKVLRSDNGREYLSGAFEQFLIDNGIERQLSV
FT                 PYTPQQNGVAERANRTLVEMARSMVVQAGLNESFWAEAIKTASYLRNRAET
FT                 STLHGMTPFEVWTGRKPCVGHLRVFGAKTIVLNKMRKRKFSPKGEEHILVG
FT                 YAELSKAYRLYNFEKRRVITARDVIFIEDDFTKKDLAKVSEYQIVELQCET
FT                 PVDECLQVEPEVSSSILSSTEQQPQDVEARRGPGRPKMILTGLPGRPKKQY
FT                 TMLNILTTEDVSVPSSYSMALSSEHGDKWKASIQKEMNSLKANGTWSLVDL
FT                 PEGQKTIGCKWVFAVKRDKFGNVETFKSRLVAKGCAQRLGINYFETFSPVA
FT                 RYSTIRLVIALAVEYKMFLHQMDVSSAYLNSYLQDEVYMRQPEGFVDKQFP
FT                 KRVLKLHKSLYGLKQSGREWNEQLNAVLLKIGFTPCPSEPCLYIRNTQGIM
FT                 GIVVVYVDDLIISSSSKDDLNEIKVLISQSFDVVDNGTLKHFLGMEIEREG
FT                 DTGGVRIGHKQYIETLLSEYKMQDCKPNSIPLEVGHQIKCDNEGCSQVDQV
FT                 KYQSLIGSLMYLAMTTRPDILHSTVKLAQRNASPHGEHEAAAKRILRYLRG
FT                 TSELQLCFKRTGRDIHCYVDADWAGDSTDRKSYTGWAFFAAGAAFSWESKK
FT                 QSVVALSSTEAEYIALSGAAKEAMYIKKLITEMGFGGIKTLQVFSDNQSAQ
FT                 CLAKNPKFHARSKHIDIKYHHVRDMYKSKIINIEYVSTENMIADVLTKNLN
FT                 RVKHEKCISLLGLL"
XX
SQ   Sequence 4017 BP; 1300 A; 695 C; 992 G; 1028 T; 2 other;
     gtcgctaatg aagctcagaa acgaataaat cttataatag gttatgggcc cagagtgcgt        60
     ataaactgcg tgtaacctaa aatttctgaa cattccgaaa agtgactcga atttgcaaaa       120
     atgagtgtat cgtggcaaat tgaaaaatta aatgaaagta actatgatgt atggtgcatg       180
     accatggaga gtttcctgat agcgtcagac ctctgggatg tggtcagtgg tgatctggtt       240
     aaaccagaag acggtgccga tttagtcaaa tggattaaaa ctgataaaaa ggctcgagca       300
     tacatagtaa tgaacatgac gggggcgcaa atgacacaag tgaaaaagtg tatgacctcc       360
     cgcgaaatgt ggactaaact aaaagagttg catatgccgg atggccctgt ccaacaattt       420
     caactttata gaagattgtt agggctaaaa ttgcaacaag gcgggagtgt gttacaattc       480
     gtcaacgaat ttgttgagat atgtaataaa ctgtgtgaat tggatattgt gctatctgat       540
     ccagtgaaag taataatgat tctatcgagt ttgcccaaat cattcgaact tttcgttgtt       600
     gctatgcaga cgcgtgataa actgccttcg tttgaacaag tgaagtcgaa gcttctagaa       660
     gaaggtgaac ggcataaagg aatcgaggtg tatgaagaag ccgttgaaaa aactgcatat       720
     tcagcgggca ccgtaaatga gaaaaccaga gataacacaa agaacagaaa aaatttcggg       780
     cgccaatcga atgcgakama gccgttagag tgttggtcgt gcgggcaata cggccacaaa       840
     gctgcaaact gcaaaaaacg aaatgactct aagaaagaaa cggagaatgg gagaagtgag       900
     aaatcatact ccagcgtttg tctaagtgag cagccgaacg aaattagtcg aaagatgtgg       960
     tgtttggaca gtggggccac agctcattta tgttgtgaaa aatcgcggtt tactaacttt      1020
     aaagaacatg aagagcgtat actcttagct gacaataaat ttgttgagtc agagggccgt      1080
     ggcagtgtac gtgtaatctg gaaaaatttc ggtattacat taatggatgt gctgtacgtg      1140
     aaacacctgc agtgtaattt tatgtcggtg tcaaaagcga ttgacaatgg acttaatgtt      1200
     acatttacaa gagataacgc aagtgtaatt gagaacgacg gcacggttat attgcactgc      1260
     caagagacaa aacggtttgt ttatatttga aagcgaaaat aataagtgtt ttaatattac      1320
     gcgggtgacg acaccacaat tatggcacag tagatttgga catttaaatt tcgggagcct      1380
     taacaaaatg gttaaggaac atatggtgaa cggcctaaag tcgaactttg agaaccatga      1440
     tgtgtgtgaa atatgtgcga aatgcaaaat cagcggaaag aaatttccaa aggccagtga      1500
     gagccgcgca aaagacattc tcggtttggt gcacacagac atatgtggtc cggttaatca      1560
     agcatctatt ggaggtgcac gatattttgc aacatttatt gatgataaat ctagatatgt      1620
     gtttgtgtac ttcttaaaat cacgggatga gattttagaa aaatttaaag aatttaagac      1680
     acttgctgag aatcaaaccg gtaaaaggtt gaaagtcttg agaagcgata acggccgaga      1740
     gtacttgagt ggggcattcg agcagttttt gattgacaat ggaattgaga gacaattatc      1800
     agtgccatac acaccgcaac agaatggtgt agctgagcgc gcaaacagaa ccttggttga      1860
     aatggcgcgt agtatggtgg tacaggctgg actcaatgaa agtttctggg cagaagctat      1920
     caagactgca tcctacttga gaaatcgcgc agagacgtca actttacatg gtatgacccc      1980
     ttttgaagta tggactggca gaaaaccttg cgtagggcac ttgcgagttt tcggtgcgaa      2040
     gaccattgtt cttaacaaga tgcgaaagag gaaattttct ccaaagggtg aagagcatat      2100
     tttggtagga tatgcagaat tgtcaaaggc ataccgctta tataattttg agaaaagaag      2160
     agtcatcaca gcccgtgacg taatttttat tgaagacgat tttaccaaaa aggatttggc      2220
     taaggtgtct gaatatcaga tcgttgaact ccaatgcgaa actccagttg atgagtgttt      2280
     gcaagtagaa cctgaggtga gttctagcat tttatcgtct acggaacagc aacctcaaga      2340
     tgttgaggct agaagaggac caggacgacc aaagatgata ctcactgggc tacctggacg      2400
     cccgaagaag caatatacca tgctaaatat cctgacaact gaggatgtct cagtaccgag      2460
     tagttacagc atggcactaa gctcagagca tggagacaaa tggaaggcat cgattcagaa      2520
     ggagatgaat agtttgaaag ccaatggtac gtggtcatta gttgacttac ccgaaggcca      2580
     gaagaccatt ggatgcaaat gggtatttgc agttaaacga gacaagtttg gcaacgtcga      2640
     gacgtttaaa tcacgactgg ttgctaaagg gtgcgcacag cgcctaggta ttaattattt      2700
     cgaaactttt tctccagttg ctagatattc aacaattaga cttgtcatcg ccctggccgt      2760
     ggaatataaa atgtttctgc atcagatgga cgtttcgtca gcatacctca acagttactt      2820
     gcaagacgag gtatatatgc ggcagcctga aggctttgtt gacaaacagt ttccaaaacg      2880
     ggtcctgaag cttcacaaat cgttgtacgg ccttaagcag agtgggcgag aatggaatga      2940
     gcagctcaat gccgttctat tgaagattgg ttttactccg tgtccgagtg agccatgttt      3000
     gtacatacgc aatacccaag gcatcatggg aattgtagtt gtgtacgttg acgacttgat      3060
     catatccagt tcgagcaaag atgacctgaa tgagatcaag gtgctaatct cacagtcgtt      3120
     tgatgtggtc gacaatggca cattgaaaca tttcctgggt atggaaattg agcgagaggg      3180
     tgacactggt ggagtaagga ttggtcacaa acaatatatt gagacacttc ttagtgagta      3240
     taaaatgcaa gactgtaagc ctaatagtat acccctagaa gttggtcatc aaatcaaatg      3300
     tgacaatgaa ggatgcagcc aagtggacca agtcaagtac caatccctta ttggatcgct      3360
     tatgtatctg gcaatgacta cccggccaga tatcctacac tctacagtaa aacttgctca      3420
     gcgaaatgca agtccgcatg gggagcacga ggcagctgct aagcgtatac tgagatacct      3480
     gagaggcaca tcggagctac aactttgttt caaacgcaca ggtcgagata tccattgtta      3540
     cgtggatgct gattgggcag gcgactcgac agatcggaag tcgtacactg gatgggcgtt      3600
     ctttgctgca ggcgctgctt tcagttggga atcgaagaag cagagcgtag tggcactaag      3660
     cagcaccgaa gcagaatata ttgcgttgtc tggcgctgct aaagaggcaa tgtacatcaa      3720
     gaagctgatt accgaaatgg ggtttggtgg cattaaaacg ttacaggtct ttagcgacaa      3780
     ccaaagtgca caatgtttag ccaaaaatcc aaagttccat gcgagaagca aacacattga      3840
     tattaagtat catcatgtca gggatatgta taaaagtaaa attataaata ttgaatatgt      3900
     atctactgag aatatgattg ctgatgtatt aacaaagaat ttgaatagag taaaacatga      3960
     gaaatgtatt agtctactag gacttttgta atgaagacat aatgcgttga gaaggag         4017
//
ID   Copia-6_DAn-LTR repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   29-OCT-2011 (Rel. 17.03, Created)
DT   29-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DAn_;
KW   Copia-6_DAn-LTR; Copia-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-139
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 302-302 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 139 BP; 37 A; 20 C; 27 G; 55 T; 0 other;
     tgttggaatt ataaatttat acatgagtgt acaacgcact atgtggatgg ttatgtactg        60
     aactgtaaac taattgtcgc ttacttatgt ttctaagttc gtctgcctgc gtgcagtcta       120
     ttatatttta ttgaagtca                                                    139
//
ID   Copia-6_DEl-I repbase;    DNA;    INV; 3204 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DEl-I;
KW   Copia-6_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3204
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7052-7052 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 3204 BP; 946 A; 608 C; 873 G; 771 T; 6 other;
     ggttatgggc cttttggggg ctcttttttt tttttactgc sgagatcgaa acggaaaaat        60
     gagtgcgatg taccaaattg agaagctgga cgagaagaat tacgactcgt ggtgcgtcca       120
     gatgcggagt gtattggtgc actctgagct gtgggaagtc gcatcagggc agttaaaaca       180
     agaagctgct ccagaaggcg tgagctggct aggcatggat caaaaggcct tggctacgct       240
     tattttaagt gtaaagccct cacagttgtg gtatgttaag cattgttcac atgccgctga       300
     ggcctggtca agactaagag aagtgcatca gccaagcggt cccgtccgca aggtatcgct       360
     ttacaagaag ctcttaaatc tcaagatggc agatggacag acaatgaccg gctacataag       420
     tgtgtttgtc gaaatcttag atcaacttgc aagtgtgaat atcgatctaa atgaagagct       480
     gagagcaatt attttacttt ccagtctccc aaaagactat gaaagttttg ttgttgccat       540
     agaaacgcgt gacgatttac cggcgtttga aaatctgtgc ataaagttaa aggaagaagg       600
     agaaagaaga gacagtgaga tcgcaacgag tgagcaagcg ttggtcgcta ggcaacgacc       660
     gagaaaaagc aaaccaacgg tgaagtgcta caaatgtggc gaacgcggtc acatacagag       720
     aaactgtaca tgtactcgac cagcagtgga gagtaatggg cgaacaaaat ctatgaactg       780
     ttmtctctta ggcgcactga acagcggttc tcttgatcaa gagacttggt gtctcgacag       840
     ggcgctacta gccacatgtg ttagaaagat ttttagaagt ttgaagacca caccgaaatg       900
     attggactcg ctgatgatgg cctgttaaga gcggaaggaa aaggcgaagt gaacttgcaa       960
     attggagagt gtgaactaag gttgagaaat gttctgtatg tgtcgagatg tatccttaca      1020
     ttcgttgacg acaagtcgaa acgtgtgttt atatatttct tgaaggcaaa gacgaagtat      1080
     ttaacaaatt tgtggattta aaaatatggc cgagcgacaa acaggaaaaa aactatggta      1140
     cgtgatcggg cgtttgataa tttcctgaga tcaaatggaa tagtacggca gcttacagtc      1200
     ccctacactc cgcagcaaaa cggagttgct taaaccggac tttggtggaa atgtcscgat      1260
     gcttactagt gcagtctgga ctatgcgagg cactgtgggc agaggcagta ccgcggatac      1320
     ttacgcaatc ggtcacctac gagtgcactg accaacatga cgcgcatgga agcgtagact      1380
     ggtaagaaac catctgtcag tcatctcaaa gtttttggct ccattgcagt ggcgttagac      1440
     aaaggtgtgc agagaaggaa gttccaacct aagggcacgg agtaccgcat ggtcgggtat      1500
     tcgaggacag ccaaggcgta caggctatat gaccctaaaa agcggcaagt ggtcgagaag      1560
     agagacgttc tttttgatga gagtgacagt ggagcgcagc agactggaga tgagacgatt      1620
     tcgtttgatt ggcagcggac cgcggaaata ccaagcactt ctggcggaga tatccaacaa      1680
     gagctggctg aggaaatgga tgatgaacac ggtatcaaag agtcgcccaa agaaacagta      1740
     taatgtactt ggaaatctgg ttgcaagtga tggacagata ccatcaacgt acaaggaagc      1800
     ggttagcgga gcacttgcga cccagtggct cgaagcgatg cgatctaaat acgacgcttt      1860
     gattacggat cagtaaggat gttctcagcg ttatggcgta aactttagcg agacattttc      1920
     gccagcttgc agattggaaa gcatgcggtt gattttggcc atggcagctg aaatggaact      1980
     ctacgtacac cagatggatg tatgcacggc gtacctaaac agcgacctgg atgctacagt      2040
     ktacatgcaa caacccgaag gttatgaaaa cggcagcaag acgggaaagg tgctcttgct      2100
     gaaaaaggct atatacggct taaagcaggc tggaaggcaa tggaacatca aactggatgg      2160
     cgttctgaaa agcattggtt tcctcccatt ggaaaatgag ccgtgcttgt ataagcgagt      2220
     tggcgaaggt aatattgcgt taatcctggt ttacgttgat gatctcatta tagcgtgcaa      2280
     aagcaaatca gacttggttg atatcaagac atcgatttcg acggctttcg aatgtgttga      2340
     caaaggcgca atacgactgt ttctcggcat ggaggtggaa cgagagggtg aactgggaga      2400
     gatcactctt gtgcagacgc aattcattca ggatttgttg cgtcgacatg atctacagtg      2460
     ctgcagacct gcatctactc ctttggacgc aggataccag gttgcgtgtg atgaaaagtg      2520
     tgctaaagta gacgaaacgg cgtatcaatc agcagttggt gagctgatgt gcattccgtt      2580
     gcaaaactag ctcagcgaaa caaggatcca cacagcgaac acttagcggg tgtcaagcat      2640
     gtcatgcggt acctagcggc tacgatgaac tacaagttgc actataaaaa gacaggacaa      2700
     gcgttcgttg gctatgtcga cgccgattgg ggcggtgaca ggattgatcg aaaatcsttc      2760
     acaggatacg ttttcttcct agccggcggt ccgatctcat ggaaatcgga gaagcagcac      2820
     agcgtggctc tcagcagcac cgaagctgag tatatggctt tgtcgacggc gtgtaaagag      2880
     gcagttgcta tgagacggct tattgtcgaa cttggttgtg gcgacccgaa tattccaacg      2940
     gtcgtgtatg gagataactt aagcgctcat cagctagcaa aaaatmcggt gcatcattgc      3000
     aaggacgaag catgtagata taagatacca ctttgtacgt cagatattaa gtgaaggtca      3060
     gattgttttg aaatatgctt gcaatgaggc aatgattgca gatgtattga ctaagaattt      3120
     ggcaaagaag aaacaccatg aatttgtaaa attgttgaat ttgtactagc aatattattg      3180
     taacgtgctt gcattgagga ggag                                             3204
//
ID   Copia-6_DEl-LTR repbase;    DNA;    INV; 175 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.12, Created)
DT   25-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-175
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7055-7055 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 175 BP; 53 A; 41 C; 31 G; 50 T; 0 other;
     tgttgaaaat gttagtcatc cgaagcaatg catgctcgta actctacaat aagactcgta        60
     ttgtaacagg gacaaaactt cagatgcgag tcagtcgcta ataaactctc aagctaatca       120
     catcattatc gtgtgcttat attttcctgc acggtgacgg tcatcccctc caata            175
//
ID   Copia-6_DMo-I repbase;    DNA;    INV; 4882 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-4882
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2967-2967 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           375..4493
FT                 /product="Copia-6_DMo-I_1p"
FT                 /translation="MEKVKRNIKPFDGEKYSIWKFRIRSLLLEQGLLSVVD
FT                 SDAPLEDRERFLRKNSKARAIIIEYLTDAFLGFAANENSAKKIFSDLDALY
FT                 ERKSIASQLSVRKQLLSLKLKSGTSLIHHFNIFDDLITELIASGAKVEEVD
FT                 KVSHLLLTLSPCYNGVITAIETLSEENITLSFVKNRLLDHEVKLRDEAKDT
FT                 STKVLQAISSEVSPKNKRNISSNKNRKTFRSKKTKSKSNMNCYFCGKKGHF
FT                 QKDCFKFKKLKSSNNKENEKQVQAASVVPQQAIAFMIRRAISHSTICGGVS
FT                 FILDSGASDHIINSKSLYADHIDVEPPIGIAVAKCGEYVYATSKGIVKLRS
FT                 SSQVDVTLEDVLYCKEIPHNLLSVKRMQDSGVTIEFHPGGVKATKDGQVIL
FT                 EGICEYNVPIIKFELCHRAYAMHKNNTNKEYRLWHERLGHLSKGKFLEIKR
FT                 HNMFEDTHLLKNVQINNEICEACVNGKQCRLPFEKSKNKEYIRRPLFIIHS
FT                 DVCGPITPSTVDGKSYYAVFIDQYTHYCVTYLLTHKSDIFAMFKDFVAKSE
FT                 AHFSLKVAKLYIDNGREYLSNEMRQFCVDKGISYHLTVPHTPQQNGVAERM
FT                 IRTLTEKARTMVNGAQMNKMFWGEAILTATYLINRLPSSALRGHNKTPYEM
FT                 WHNKKPNLKYLKVFGSIVYVHQKVRKRKFDDKSSKAILVGFEPNGFRLWDL
FT                 SARKFVVARDVIVDEATMNSRADADSVADSGFLNENKKHKALDLIDNPSDS
FT                 GNHKGHDDILNKSKDCKNSDLLNVDLIAIPNKEHKGQKGIRNESTEENADI
FT                 CVSDDQSKNSLETPCVGVESIGKQCDVRRSERLMNKPATSYKLLNSCLMNA
FT                 QNLPDNVPKSFDEITNRADKANWQKAIKEELESHYQNETWTIVDRPKNKNL
FT                 VDSKWVFSIKHDEFGNPTKYKARLVARGFTQEYMIDYEETFAPVARISSLR
FT                 LILSLSNQFDLQVHHMDVKTAFLNGELKEEIYMLVPQGLSYGNDKVCKLNK
FT                 ALYGLKQAARCWFQVFEKALKEIGFVSSEVDSCIYIIDNGDILKNIYVLLY
FT                 VDDIIIATKNLETMSNFKSYLKGKFRMTDLMEIKFFIGIKIDRSGDRLSLC
FT                 QSTYIKNVLERFNMHESKPVSTPLANKLNYEALNSEEECDAPCRNLIGCLM
FT                 YIMICTRPDLCTSVSILSRYTSKNNKELWQCLKRVLRYLKGTIDLKLTYVK
FT                 SSNFENVIVGYADSDWAGCESDRKSTTGYIFKMFDLNLICWNCRKQNSVAA
FT                 SSTEAEYMALFEAVREALWLKSLMQGIKFKIYKPIKIYEDNQGCINIANNP
FT                 TCHKRTKHIDIKYHFSREQIANKLIIVEFISTDGQLADMMTKPLPAMRFLS
FT                 LRDQMCLTED"
XX
SQ   Sequence 4882 BP; 1711 A; 706 C; 989 G; 1476 T; 0 other;
     ggttatgggc ccaggcacga ataagtaaaa taaattaaaa agttaaataa atagataatt        60
     acttctgtta gttgttcgaa ataaatatac atatgtataa aatttagtgg cagtgcatat       120
     aggtatacac atacaaatat acatacatat acgcaagaga aattgcgtcg cagttccgcg       180
     gcgagcagtg gacagttttg tatgtacaga caaaacatag ctagatcagt ggcgccgcag       240
     ttcttggaaa agaaacagca atatatacat ttgtatatat gtatgtgagt gcatgctgtg       300
     tattagaaga gtagtttaca catatgcata catagctagc gcagtggcgc cgcagttctt       360
     ggaaaagaaa cagcatggaa aaagtgaagc gcaatatcaa gccgtttgac ggcgaaaaat       420
     attctatttg gaaatttaga atacgttctt tgttattgga acaaggttta cttagtgtcg       480
     tggatagtga tgctcctcta gaggacagag aaagattttt aagaaagaac agtaaggcca       540
     gagcaattat aatagaatat ctaactgatg catttttagg ctttgcggca aatgaaaatt       600
     ctgcgaagaa aattttttcc gatctcgacg ctctttatga gcgtaaaagc atagcgtcac       660
     aattgtctgt ccgaaagcaa ttattgtctt taaagttaaa aagtggcaca tctctgattc       720
     accatttcaa tatttttgac gatttaatca ccgaattaat tgcatcgggt gcaaaggttg       780
     aggaggtgga caaagtgagc catttattgt tgacattgtc gccttgctat aatggagtca       840
     taactgctat tgaaacgttg tctgaagaaa atataacttt gtcttttgtg aaaaatcggt       900
     tgcttgatca tgaagttaaa ttgagagatg aggcgaaaga cacaagtacc aaagttttac       960
     aggctataag tagtgaagtt tctcctaaaa ataaaagaaa tataagttca aataaaaacc      1020
     gtaaaacatt tcgttcaaaa aaaactaaat caaaatcaaa tatgaattgc tatttttgtg      1080
     gaaaaaaggg acactttcag aaagattgct ttaaatttaa aaagctaaag tcaagtaata      1140
     ataaagaaaa cgaaaagcag gtacaagcag catcggttgt accacagcaa gcaatcgcct      1200
     tcatgataag acgggcgata agtcactcta ccatatgtgg cggtgtgtca tttattttgg      1260
     actcaggagc gtctgatcac atcataaaca gcaagagtct gtatgctgat catattgatg      1320
     tggaaccccc tattggtatt gcagtggcaa agtgtggcga atatgtatat gccacatcaa      1380
     aaggcatagt taagctacgc agcagtagcc aagtcgatgt cactctggag gatgttttgt      1440
     attgtaaaga aattcctcat aacttgctct ctgtgaagcg aatgcaagat tctggagtaa      1500
     caatcgagtt tcatccagga ggtgtgaagg ccacaaaaga tgggcaagtg attctggaag      1560
     gtatttgtga gtataacgtt cccattataa aatttgagct atgccataga gcatatgcaa      1620
     tgcataaaaa taatacaaat aaagaatatc gtttgtggca tgaaaggttg gggcatttaa      1680
     gtaaaggtaa atttttagaa atcaagagac ataatatgtt tgaagatact catctcttga      1740
     aaaatgtaca aattaataat gaaatttgtg aagcatgtgt aaatgggaag caatgtagac      1800
     ttccatttga aaaatctaaa aataaggaat atattagaag acctttgttt attatccatt      1860
     ccgatgtatg tggtccgata acaccttcta ctgtagatgg caaaagttat tacgctgtat      1920
     ttattgatca atatacacac tattgcgtaa catatctttt gacccataaa tcagatattt      1980
     ttgcaatgtt taaagacttt gtagcaaaaa gcgaggctca tttcagtttg aaagttgcca      2040
     agctatatat agataatgga agggagtatt tatccaacga aatgcgacaa ttttgtgtag      2100
     ataagggaat aagctaccat ttgacagtac ctcatacccc tcagcaaaat ggtgttgcag      2160
     aacgcatgat aagaacatta actgaaaagg ctcgcaccat ggtaaatggc gcacaaatga      2220
     ataaaatgtt ctggggtgaa gctattttaa cagctactta tttaataaat agactcccaa      2280
     gtagtgcact aaggggccac aataaaactc catatgaaat gtggcacaac aagaaaccaa      2340
     atttaaaata tttaaaggtg tttggttcta ttgtgtatgt tcatcaaaag gtgagaaaaa      2400
     gaaagttcga tgataaatca tctaaagcca ttcttgttgg ctttgagcca aatggttttc      2460
     gactttggga tttaagcgca agaaagtttg tggttgcaag agatgttatt gtagatgaag      2520
     ctacaatgaa ttctagagct gatgcagatt ctgttgcaga ttctgggttc ctgaatgaga      2580
     ataagaaaca taaagccctg gacctcattg ataatcccag tgatagtggg aatcataaag      2640
     gtcatgatga tatccttaat aagagtaagg attgcaaaaa ttcagatttg ctgaatgtgg      2700
     acctcattgc catccctaat aaggagcata aaggccagaa gggcatccgt aatgagagta      2760
     cggaggaaaa tgctgatata tgtgtatcag atgatcagtc taaaaattct cttgagacac      2820
     catgtgttgg tgtggaatcc attggtaagc aatgtgatgt tagacgaagt gaaaggttaa      2880
     tgaacaaacc agcgacgtct tacaaacttt taaacagctg tttaatgaat gcgcagaatt      2940
     tacccgataa tgttcccaag tcatttgatg aaatcacgaa tagagctgat aaggcaaact      3000
     ggcagaaagc tataaaagaa gagctggagt ctcattatca aaatgaaaca tggactattg      3060
     tagatagacc aaaaaataag aatttagtcg atagtaagtg ggttttctcg ataaagcatg      3120
     atgaatttgg aaatccaacc aaatataagg cgagacttgt agctcgaggt tttacacagg      3180
     aatacatgat tgattatgag gaaacatttg ctccagtagc acggatatct agcttgcgtc      3240
     ttatactatc tctgtcaaat caatttgatt tacaagttca ccacatggat gttaagaccg      3300
     catttttaaa tggagaacta aaagaggaaa tttatatgct tgttcctcaa ggcctatcat      3360
     atggaaatga taaagtctgt aaattaaata aagctcttta tggactaaag caagcagcta      3420
     gatgttggtt tcaggtgttt gaaaaagcac tgaaagaaat tggatttgta agctctgaag      3480
     ttgacagttg tatatacata attgataatg gagacatttt aaaaaatatt tatgtacttt      3540
     tatatgtaga cgacataatt atagcaacga aaaaccttga aactatgtct aattttaaat      3600
     catatttaaa gggcaaattt aggatgactg atttaatgga aataaaattt tttattggaa      3660
     ttaaaataga taggagtgga gataggttaa gtctttgtca gtcaacttat attaaaaacg      3720
     ttttagaaag atttaatatg catgagtcta agccagttag taccccactt gcaaataaac      3780
     ttaattatga agcattgaac tcagaggagg aatgcgatgc tccttgtcga aacttgattg      3840
     gttgccttat gtacataatg atatgtacgc gccctgattt atgtacatca gtgagcattt      3900
     tgagcagata taccagcaaa aataacaaag aactatggca atgcctgaaa agagttctaa      3960
     gatacctgaa aggtacgatt gatttgaaat taacgtatgt taagagttca aactttgaga      4020
     atgttattgt tggatatgct gactcggatt gggcaggttg tgaaagtgac aggaaaagta      4080
     cgactgggta catatttaaa atgtttgact taaatctgat ttgctggaat tgtaggaaac      4140
     aaaattcagt agcggcttct tctacagaag cagaatacat ggctttattt gaagcagtca      4200
     gggaagcttt atggcttaag tcattaatgc aaggaataaa gtttaaaata tacaagccaa      4260
     ttaaaatcta tgaagacaac caaggttgca ttaacattgc gaataaccca acatgccaca      4320
     aacgcacgaa acacattgat attaaatatc atttttcacg ggaacaaatt gcaaataaac      4380
     taattattgt tgagtttatt tctacagatg gtcagctggc ggatatgatg acgaagcctc      4440
     taccagcaat gagattccta agtctgcgtg atcagatgtg tctgactgaa gattaactaa      4500
     caaaatgctc tatgaagcta catttgaaga aaaatatttg aatatttaat ttttccttta      4560
     attgttcctt tttgtatgga atttttttgt ttcttgaatt catattgaat gttaaattct      4620
     tatcttagtt tataattgga tgtttaattt ttctttaatt gtcaattgaa atttaaataa      4680
     tattagtatt attaagaatg gtctggttgg gttttgtctg ggtttcccca atccgtcgca      4740
     acgaatgttg gaccatgtta ttgtaattac tccccagaaa ggtacagcac atcaagttaa      4800
     gaaatcatgt acaattgaat taatgtatta taattttttt taatttaatt tttgttatat      4860
     cgatgttcct tttgaggagg tg                                               4882
//
ID   Copia-6_DMo-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-321
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2955-2955 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 321 BP; 90 A; 55 C; 68 G; 108 T; 0 other;
     tgttgaatat tgaatttcat cactatgttt agaaacactc atgttgcagc atatagcaat        60
     agtttgcaac attgtgaaat tcattctcat gcaaaagcaa catcgatcgt aatgttgagt       120
     gtcgcgacgc tagtctagaa acattatgtg tctgacgaat ttgactagca cgcattgaat       180
     gttgctgcgt cgcgatctgt cttgttgcga ttcttgagct gtgtagatcg atgtgctgtg       240
     ccgtgcttaa atgaaaatat aagtcgtaat acaaagtata acaactactg tgtgatctta       300
     tttcgggcct ggtttttaac a                                                 321
//
ID   Copia-6_DTa-I repbase;    DNA;    INV; 4113 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4113
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (26-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, paired flanking LTRs are ~97%
CC   identical to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(136..876,883..1326,1299..1925,1898..3280,
FT                 3214..4098)
FT                 /product="Copia-6_DTa-I_1p"
FT                 /translation="MSVSVQIEKLGEDNYDVWSISMRSILVTQDLWSVASG
FT                 SITKPLDSSECASWEIIDQKALASLILNVKPTQLMHIRHCSSAYMAWRKLR
FT                 EIHASGSPAKKVQLYQKLLGLNLHNGESVNSYINAFTETTDKLAELEIRLQ
FT                 DDLKVIMLLSNLPSSWESFVVAIETRDKLPSFDTVKVKLLEEGARKEERDK
FT                 RERTDQAVYAHRNLQSKGTVFKSRGKASKDEKQYEKIQFKEKLQVQKNRSS
FT                 RERLPRVYRKTAIELLNAYSVCKQNEFVWCLDSGATSHMCCNKNLFSTFIE
FT                 RKSKIMLAAEEYIESSGFGAVVFCAENVNIRLEEVLFVPTLHMNFLSVSQA
FT                 AAYGKFTVFDKYKAVIKDEKGNIVLQAQQRNXLYLFEMSSHSNIVCMAKKI
FT                 HYCLYGKKNTLVTKWHDRFGHLNFQXLKQIADQNLVTGINTQHVPTNINCD
FT                 TCNISKICALPHPQRADMISTSVLELIHSDVCGPMNVKSLAGXRYFVTFID
FT                 DYSRKIHVYFMRAKNEXLEXFKLFKNFVECQKGRKIEKLRNDNGKEYINNK
FT                 FTEFLNSCGIKRQLXVPYTPQQNGVAERANRTIVEMAKSLQIWMNFCRLKP
FT                 SAQLPIAEAVRTAAYLRNRCPTKSIDGKTPFEMWSKRLXPVKHLRIFGSRA
FT                 FALDLTSRGKFKPKGKEYIFVGYSQAAKAYRLYDPGSRSIIVRRDVKLVEG
FT                 EFAKKNDSPQIPNFDSNIIRLECLSEVDQGAANNDGSTTPEDEERGAQQQH
FT                 SPRCDSTHSGEEEDIFVSASDPDEQDEVHSEAVPNQDENMPISSQNAVRRG
FT                 PGRPKINRTGNPGRPKKEFQMLNNINSLQDAETPNTAVEALFGQYSKHWKT
FT                 SMQAEMDALEANGTWSLTDLPKGQRAIGSKWVFRIKRIKDGEIERFKSRLV
FT                 AKGCGQQFGIDYWETYSPVIRYETLRMLFAVAVEKQLNMHQVDISNAYLNA
FT                 ELHEDVYMKQPSNFVDNRNPNCVLKLRKAIYGLKQPGRAWNSTLDEALQRI
FT                 GFNRSRNEPCLYIKESQNKYSYIAVYVDDLIIICPSEEDITVVKRSWVWKS
FT                 TEMAIRDVGGHHRGQKVLGLEINRDGDTGCITLCQQRYIHCLLDQYGMTAC
FT                 RPAATPLDAGFHITCKDTDCVKVNITKYQLLIGSLMYLAVLSRPDIVHAVS
FT                 KLSQRNTDPHIEHESAAKHLLRYLAGTSNLSIVYKKSGGSVIGFADADWAN
FT                 DQLDRKSYSGYAFFLAGAAFSWSSTKQSVVALSSTEAEYIALSTAAREAIY
FT                 LRRLLGDMGWPNQEPITIFGDNISSHHIARNPIHHKRTKHIDIKFHYVREK
FT                 VESNEINLKHVFTEENVADLLTKGLCKQKHCKFVRALGLVDSNSADHV"
XX
SQ   Sequence 4113 BP; 1348 A; 811 C; 975 G; 968 T; 11 other;
     aaggttatgg gcccaggaaa ccggcaatat atagtggttt aaatacggag attcgacaaa        60
     gtcatctcga gaactcaata cgttgtaaat ttttgttaaa cgtcaataaa tcgttaagcg       120
     tggttcgtwa acaaaatgag tgtgtctgtt caaatagaaa aattgggaga agacaactat       180
     gacgtgtggt cgatatcaat gcggagcata ctcgtcaccc aggatttgtg gagtgttgca       240
     agtggaagca ttaccaagcc cctagacagt tcggagtgtg ccagttggga aattattgac       300
     cagaaggcgt tggcgtccct gatcctgaac gtgaagccga cacagttgat gcatattagg       360
     cactgctcta gtgcatacat ggcatggcgg aaacttcggg aaattcatgc atcaggcagt       420
     ccagccaaaa aggtgcagct ctatcaaaaa ctcttggggc taaatctgca taacggtgaa       480
     agtgtcaaca gttatataaa cgcatttacg gaaactaccg ataagttggc cgaacttgaa       540
     atacgtctcc aagatgattt gaaggtcatc atgttattgt ccaatttgcc aagtagttgg       600
     gagagtttcg tcgtagcaat cgaaactcgg gacaagttac ctagcttcga tacagttaag       660
     gtaaagcttt tagaagaagg agcgagaaaa gaagagagag ataagagaga acgtactgat       720
     caagcggtat atgcacaccg aaacttacaa agtaagggta cagttttcaa aagtcgcgga       780
     aaagctagca aagacgaaaa acaatacgag aaaattcagt ttaaggaaaa gttacaagtg       840
     cagaaaaatc ggtcatcgcg cgagagattg ccgagatagt gagtctatcg aaaaactgca       900
     atcgaactgc ttaatgcata tagcgtgtgt aaacaaaacg aatttgtatg gtgtcttgat       960
     tctggtgcga cttcacatat gtgctgcaat aaaaacttat ttagtacatt tatcgaaagg      1020
     aaatcaaaga taatgcttgc ggcggaagag tatatagaat cttcgggttt tggcgcagtt      1080
     gtgttctgcg cggaaaacgt aaacattcgg ttggaagagg tgttgttcgt tccaacgttg      1140
     cacatgaatt ttttgtcagt aagccaagcc gctgcttacg gtaaattcac agtgttcgac      1200
     aaatacaaag ctgttatcaa agatgaaaaa ggaaacatag tgctacaagc gcagcagcgg      1260
     aatwatttgt atttattcga aatgagttcg cacagtaata ttgtttgtat ggcaaaaaaa      1320
     atacactagt aacgaaatgg cacgatcggt tcggccactt aaactttcag mgtttaaaac      1380
     aaatagcaga tcagaatcta gtgaccggga ttaatacwca acatgtgccg acgaacatta      1440
     actgcgatac atgtaacatt tcgaagatat gtgcgctacc acacccacaa agggcagaca      1500
     tgatttcaac aagcgtgttg gaattgattc actcggatgt ctgcgggcct atgaatgtga      1560
     aatcattggc cgggaamcgc tacttcgtca cattcatwga tgattattct agaaaaatmc      1620
     atgtttactt catgcgtgcg aaaaatgagg wactggagwa gtttaagctg ttcaagaact      1680
     ttgtggaatg ccagaaagga aggaaaatcg aaaagctgag gaacgataat ggcaaggaat      1740
     acatcaataa taaattcacg gaatttctta actcttgcgg aattaaacga caattgwcgg      1800
     taccctatac accccagcaa aacggtgtcg ctgaacgagc taaccgcacc atcgtagaga      1860
     tggcaaaaag tttgcaaatc tggatgaatt tttgtaggct gaagccgtcc gcacagctgc      1920
     ctatttgaga aataggtgcc caacaaaatc aatagacgga aaaacaccat tcgagatgtg      1980
     gagcaagcgt ttacmtccag tgaagcatct caggattttc ggctcacgtg catttgccct      2040
     ggacttgacg tcacgaggaa aattcaaacc aaaaggaaaa gagtacattt tcgtaggata      2100
     ctctcaagca gcaaaagcct accggctgta tgacccaggg agcagaagca taattgtgcg      2160
     acgagatgtc aaacttgttg aaggtgagtt tgccaagaaa aatgatagtc ctcaaatacc      2220
     caacttcgat tcaaatatca ttcgccttga gtgtctttcg gaagtagatc aaggagctgc      2280
     caacaacgat ggatccacaa ctccagagga cgaagagagg ggagcccagc agcagcactc      2340
     tccaaggtgc gattctacac acagcggcga agaggaggat atatttgtca gcgcaagtga      2400
     tcctgatgag caggatgaag tacacagcga ggcagtccca aaccaggacg aaaatatgcc      2460
     gatatcctca caaaatgcag ttcgtcgggg tcctggaagg ccgaaaataa ataggacggg      2520
     caaccctggc agaccgaaga aggagttcca aatgctcaac aacataaaca gccttcaaga      2580
     cgccgaaact ccgaacacag cggttgaagc actgtttggc cagtacagca aacactggaa      2640
     gacgtcaatg caagcagaga tggatgcgct cgaggccaac gggacttggt cattaacaga      2700
     tctgcccaag gggcagaggg ccatcggatc aaaatgggtg tttcgcatca aaagaatcaa      2760
     ggatggcgaa atcgaacggt ttaagtctcg actggtagcg aaaggttgcg gacaacagtt      2820
     tggtatagac tactgggaaa catattctcc tgtaatccga tatgaaactt tacgaatgct      2880
     tttcgctgta gccgtagaaa agcagctgaa tatgcatcag gttgatatat caaacgcata      2940
     cttgaatgcc gagctacacg aagacgtgta tatgaaacaa ccttcgaact ttgttgacaa      3000
     tcgcaacccc aactgtgtat taaagctacg aaaagcgata tatgggctaa agcaacctgg      3060
     acgtgcatgg aacagcacat tagatgaagc cctgcagagg attggattca acagaagcag      3120
     aaacgaacct tgtttataca tcaaagaaag tcagaacaag tacagctaca tagccgtata      3180
     cgtggatgat cttatcatca tttgcccaag tgaggaggac atcaccgtgg tcaaaaggtc      3240
     ttgggtctgg aaatcaacag agatggcgat acgggatgta taactctttg ccaacagaga      3300
     tacattcact gcttgttgga tcagtatggc atgacagcat gccgaccggc agcaacacca      3360
     ctagacgctg gattccatat tacctgcaag gatacagatt gcgttaaggt aaatatcacc      3420
     aagtaccaat tactaatcgg ttctctcatg tatttagccg ttctgagccg acctgacatt      3480
     gtacatgccg taagcaagct atcccagcgt aacactgatc cgcacatcga gcacgagtct      3540
     gcagctaaac acttgttgcg atatttagcg gggacatcaa acttgagtat tgtctacaag      3600
     aagtctggag gatcagtaat aggatttgca gatgcggatt gggcgaacga ccaactggac      3660
     cggaagtctt actctggata tgctttcttc ctggctggtg ctgcgttctc atggtcttca      3720
     acgaagcaga gcgtcgttgc tttgagcagc acagaagcgg aatatattgc cctgtcaact      3780
     gcagctagag aggcaatata ccttagaaga ttgctggggg atatgggttg gccaaaccaa      3840
     gagccaataa ctatcttcgg agacaacatc agctctcatc atattgcaag aaacccgatc      3900
     catcataagc gtaccaaaca catagacata aagtttcatt atgtaagaga aaaagttgag      3960
     agcaacgaaa taaatttaaa acatgtattt acagaagaaa atgttgcaga tttgttaaca      4020
     aaaggtttat gtaagcaaaa gcattgtaaa tttgttagag cccttggact agtagattcc      4080
     aatagcgcag atcatgtata gcttaagcaa aag                                   4113
//
ID   Copia-6_DTa-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   26-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-259
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5699-5699 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 259 BP; 80 A; 51 C; 40 G; 88 T; 0 other;
     tgttgaaatt gtatttaaca gtaagcataa cataatctgt tcggtaacaa tatcttgata        60
     tataacaaga atgtatgtat atcgagcagc gagctttaaa catatgtttt ccctctcgct       120
     gcctactctt gttcttaagt gtgtatactc gtacaatcac gagttcagtt ctattataac       180
     gattaaacca ttaactacaa agccgctgcg taattctttg cttgggataa tccactatac       240
     cacgtggcaa tttctaaca                                                    259
//
ID   Copia-6_DWil-I repbase;    DNA;    INV; 4258 BP.
XX
AC   scaffold_181155;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DWil_;
KW   Copia-6_DWil-LTR; Copia-6_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181155; Positions 2209922 2214179.
XX
CC   Positions [1588-2115] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..3453
FT                 /product="Copia-6_DWil-I_1p"
FT                 /translation="MSVASVRIEPLGKENFDTWKIQMEALLIKNDTWKYVN
FT                 NTCVKTEQNAAQWVKEDAKAKSDLILAMATTELKQIKNCETSNEVWKKLHS
FT                 IYQSTGPARKATLLKSLILLKLGPGADMRDHVDKFFDIVDKINETEVININ
FT                 DLISILLLYSISEEYETFRIAIESQDNLITPEALKVKLLDEYEARNRNKGE
FT                 SSPGALMINKRFNNGAPGSSKAGGFKYKCYNCGKVGHKAAKCPKKFPKNSG
FT                 ENSESYSSMYIQEANLTRTSLKGWCLDPGATSHMCSEKERFNKTYAEKSQE
FT                 LKLANGESTAINGIGSVTFKPNCKFSANLLNTLYVPDIRENLLSIAKICDH
FT                 GFNVLFKKNFAEIIQVSNGQVVFVAQRKHDLYHVEEMGEESHLAVGNKTSI
FT                 REWHERFGHLNEKDLKDVIQKGRVHGACVNINESLPICEACIKGKQSRKPF
FT                 PASDSKSKELLELIHSDVCGPMRVSSHGGSRYFVTFIDDFSKWCELYTIKS
FT                 KSEVFNKFKEFKVYVELKTGKKIKRFRSDNGTEYTNNEFNKYLKAAGIKHE
FT                 HSVEYTPQQNGTAERKNRTLVEMARCMMIQAVLPPSYWADAINTANYLRNR
FT                 CPSKSLRGEVPFTLWNHRIASIKHLRTFGQIVHSLDKRAKSKFSPRSKRCI
FT                 FIGYCNDAKAYRLYDPEAKMVLRSRDVIFTNIFGNDHEFEEFSELSAVNAE
FT                 YQEEHSQEDDFQEERVVPEENTPEENADIEENIQEEPVLQRRGPGRPRKKH
FT                 TGKPGRPKLIYNEVQIQSTIGKEPELESDEEDEYYEASSLISIGDESSTRA
FT                 ALSGPNAIEWKNALISEYKALQKNKTWETVKRERNQKVIETKWVLRTKYKP
FT                 NGEVDSRKARLVAKGFTQREGIDYNETYSPVARIGSIRTLIAIAVELDLDL
FT                 HQFDFNSAYLNGDIEEELYIKVPPEFTEILTEKEKQRYTDDKVCKLKKALY
FT                 GLKQSGRQWYKKLDYKLKQMNLKPLAADPCVYMKKQGNGIIIVSLYVDDLI
FT                 VATNNNKLLTQLKAELTRNFEMKDLGKLSYCLGIEFLQNKNKGECSLGQSR
FT                 YVKDIL"
XX
SQ   Sequence 4258 BP; 1534 A; 775 C; 937 G; 1012 T; 0 other;
     ggttatgggc ccagcaacct tccactgcgc caataattcg atggattcag aatagtgaaa        60
     ataaaataaa aagtgtaaaa gttgtggcga aaaagttcta gaaagatttt tgtgtctcgc       120
     ctgtgtggcg ccgaactgcc gtttttttta cgttgcttgt gtagcttcgc ggtcggcttt       180
     tgcttgtgta gctaagtcaa gaaaaaacgt gcgagagaga acacaataga aaacagttaa       240
     ataaagagaa acagaacata aaaaatgagt gtcgcaagtg tacgtataga gccgttaggc       300
     aaagaaaatt ttgatacttg gaaaattcaa atggaagcac ttttgatcaa aaatgatacg       360
     tggaaatatg tgaacaatac atgtgtaaag acagaacaaa atgctgcaca gtgggtgaaa       420
     gaagatgcta aggcaaaatc tgacttaatt ctggccatgg cgacaacaga attaaaacaa       480
     ataaaaaact gtgaaacttc aaacgaagta tggaaaaagt tgcatagcat ctaccagtcc       540
     acgggtcccg cacgcaaagc caccctactg aagtctttga ttttgctgaa attaggcccc       600
     ggcgccgaca tgcgagatca cgtcgataag ttttttgaca ttgtagacaa aataaatgaa       660
     actgaagtaa taaacataaa tgatttaatc tcgatcttgc tactgtacag tatatcagaa       720
     gaatacgaaa catttcgtat agcaatcgag tcgcaggaca atttaattac acctgaagca       780
     ctaaaggtaa aattattgga tgaatacgaa gcgcgaaatc gaaacaaagg agaatcatca       840
     ccaggggcac tgatgataaa taagagattc aataatggtg caccaggatc gtccaaggca       900
     ggtggtttta aatacaaatg ttataattgt ggaaaggtgg ggcacaaggc ggcgaaatgt       960
     cccaagaaat ttccgaaaaa ctccggagaa aacagtgagt catattcaag tatgtacata      1020
     caagaagcaa atcttacacg cacaagccta aagggatggt gcctggaccc tggagcaacg      1080
     tcacatatgt gttcagagaa ggaaaggttt aataaaacgt atgcagaaaa atcgcaagag      1140
     ttaaaactag caaacggcga aagtacagca attaatggaa tcgggtcggt aacttttaaa      1200
     ccaaactgta agttttctgc aaaccttttg aacacactgt atgtaccaga tattagagaa      1260
     aatctactgt caatagcgaa gatatgtgac cacggtttta atgtgttatt taagaagaat      1320
     tttgcagaaa taatacaggt atccaatggg caagtagttt ttgtcgcaca gcgaaaacat      1380
     gacctatacc atgtcgagga aatgggtgaa gaaagccatt tagcagtcgg aaacaaaaca      1440
     agtatcaggg agtggcatga acgttttggt cacttaaacg aaaaggactt aaaagatgtc      1500
     atccaaaaag gaagagtaca tggtgcatgc gtaaatataa atgagagtct accaatctgc      1560
     gaagcatgca ttaaggggaa gcaatcacga aaaccgtttc ctgcatccga ctccaaatca      1620
     aaagaactac tagaactaat ccatagcgat gtatgtggac caatgcgagt aagtagtcat      1680
     ggaggtagtc gatactttgt tacatttata gatgattttt caaaatggtg cgaattgtat      1740
     actatcaaaa gtaaatcaga agtttttaac aaattcaagg agtttaaggt atacgtcgaa      1800
     ctcaaaactg gaaaaaagat taaacgtttt agatcagaca atggaaccga gtataccaat      1860
     aatgagttta ataagtattt aaaagccgca ggtataaagc acgagcattc agtggaatac      1920
     accccacaac aaaatggaac ggctgaaagg aagaatcgaa ctcttgtgga aatggctcgc      1980
     tgcatgatga tccaagccgt actaccacct agctactggg ctgacgcaat aaacactgca      2040
     aattacttac ggaatagatg cccatccaaa agtctacggg gagaagtccc ttttacatta      2100
     tggaatcatc gtattgcatc tatcaaacat ttgcgcacat ttggtcaaat tgtacactcg      2160
     cttgacaaac gtgcaaagag taaattcagt ccaagatcta aacgttgtat atttataggt      2220
     tactgtaatg atgccaaagc ctacagacta tatgatcccg aagccaaaat ggtattaaga      2280
     agtcgtgacg tcatattcac aaatattttt ggcaacgatc atgaatttga agaattctca      2340
     gagctgagtg cagtcaatgc ggaatatcaa gaggaacata gtcaggaaga tgattttcaa      2400
     gaagagcgtg tcgttcccga ggaaaatacc ccagaagaga atgccgatat tgaagaaaat      2460
     atccaagaag aaccagtact gcaaagacgt ggacctggaa gacccagaaa aaagcataca      2520
     ggaaaacctg gtcgtcccaa gctcatctat aatgaagtcc aaatccagtc aaccatcgga      2580
     aaagagcctg aactggaatc tgatgaggaa gacgaatatt atgaggcatc gtcactaata      2640
     agcatcggag atgaatcgtc aacgcgcgca gctctaagtg gtccaaatgc aattgagtgg      2700
     aaaaatgcct tgataagtga gtataaagcg ctacaaaaga ataagacttg ggaaacagta      2760
     aagcgagaga ggaatcagaa agtcatagaa accaagtggg ttctccgcac aaagtataaa      2820
     ccaaacggcg aagtggatag ccgcaaggct cgtctagtag caaaaggttt cactcaaaga      2880
     gagggaattg attataatga aacttattcc cctgtagctc gtataggatc aatacgaaca      2940
     ctgatagcaa tcgccgtgga actcgacctc gacctccatc aatttgattt taacagcgca      3000
     tatctaaatg gagacataga ggaagaactg tatataaagg ttccaccaga attcaccgaa      3060
     atacttacgg aaaaggaaaa gcagagatac accgacgata aagtatgtaa attaaagaaa      3120
     gctttgtatg gtttaaagca gagtggacgc cagtggtata agaaactgga ttacaaattg      3180
     aagcaaatga acttgaagcc acttgcagcc gatccttgtg tgtatatgaa aaaacaaggt      3240
     aatgggatta ttatcgtttc actgtatgtc gatgatctca tagtcgcaac gaataataac      3300
     aagctactaa cacagctgaa agccgaatta acacgtaatt ttgaaatgaa ggatctagga      3360
     aaactgtctt attgcctggg tatcgaattt cttcaaaata agaacaaagg tgaatgttct      3420
     ttgggtcaat caaggtatgt aaaggatata ctatagaaat tcaacatgga ggactgtaaa      3480
     ccagtgagca cacctatgaa cgccagcgag aaaatttcaa atcaaatgtg cccaaagaca      3540
     aaaccggacc tggatgaagt atcaggcgtc ccatatcaaa gcttgatagg tgctctaatg      3600
     tggcttgcag tgtcgacgcg ccctgacatt gcacataccg taagtcttct tagccagtat      3660
     aataattgtt acgggaaaca acactgggtt gcagccaaaa gggtacttcg ttatttgaag      3720
     ggtaatcaag accatggact aatatataga aaaaccggaa aagatttggt tggctatgct      3780
     gatgccgact gggctgctaa tattgatgat cgtagatctt ttacaggttt cgcatttaag      3840
     atggcaaacg caccaataag ttgggaatcc cgtaagcagc gaactgtcgc tctttctagt      3900
     acagaggcgg aatacatggc cctatctgag acgtctaaag aggctgtaca tctaagatct      3960
     ttcttacaag agatttttgg ctcgctccgt tccaccataa tctacaacga caattaagga      4020
     gctggccaac tcacacgaaa tcctctattc cacaagagga caaagcatgt cgacatccgt      4080
     catcacttta taagggaact ggtggacaaa ggggaccttc gcattgatta catctcaaca      4140
     agtgaaatgc ccgcagacgt tttaaccaaa ggactaggaa cagcaaagca tgagtcctgt      4200
     gtgacactgt tgggagtaca aaaaatagag aaataaggcg ccatctgagg ggaagtat        4258
//
ID   Copia-6_DWil-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   scaffold_181155;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_DWil_;
KW   Copia-6_DWil-I; Copia-6_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-196
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181155; Positions 2209726 2209921.
XX
SQ   Sequence 196 BP; 58 A; 55 C; 29 G; 54 T; 0 other;
     tgcgaataca tccggcagcc tacttggtca cccgcccatc tggcaaccct atacgcgtca        60
     agacgcactc tcgtatatgg caccgtctgt gccggtcgtg tttctcatag ttctaccaca       120
     aataatatat tcactactaa tatatatata tccatcaata actctgtaaa cccatgaagt       180
     tgaataaatc tcaaca                                                       196
//
ID   Copia-6_LH-I repbase;    DNA;    INV; 4054 BP.
XX
AC   ADOQ01008480;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_LH_;
KW   Copia-6_LH-LTR; Copia-6_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4054
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008480; Positions    1248    5301.
XX
CC   'AAAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..1678
FT                 /product="Copia-6_LH-I_1p"
FT                 /translation="MATYVKNDDVVMPVFDGSDYTSWKKRLLMFLRFKECK
FT                 TVIDRLKTENDDANAWDKMDVKATNYIYSAISNKQLEYIGDLDSAYKIIKR
FT                 FDEMYLTKSTALQIVCRNTLENIKLQSYSDVSEFFNDFEKAVNDLKAAGAT
FT                 IKDEEKLNYMLKALPQSYSHIGDLMDVLSEENRTTEFLKSKIKMKAMEEKN
FT                 KDKNEVSKSNVYAAMELKNSSCYRCGKTGHFQKECRQASEVNRGHMRRGSQ
FT                 RGSRGGRYQHNSRQRGGYRGGGRGYDNIGQNAHGTNCFSVQVNTSTINEDN
FT                 LTDKTEINWLLDSGCTNHIVNNDTYFTKYIDLKKPVNVKVGDGRILSATKM
FT                 GHVEAYFQAFNKRFKVTLSNVFFVKNMEANLISYAKITDRNKIVSHGKYSK
FT                 IYNEYNTLIAIAIKEDCLYKMKSFKINQNNKSIKICANMTKNDKQNLTLKE
FT                 KWHRTLEHVNFNYLNTLCKNKLLEGLPNEIESDFMKCAICIENKMHNLPFE
FT                 NNRTRAKEILEIVHTDLNGPHKTTGNCGEKYFLSFI"
FT   CDS           2570..4030
FT                 /product="Copia-6_LH-I_2p"
FT                 /translation="MKKEIDSLERNKTWKLVKKPEDKKALDVKWIYKKKSE
FT                 DNYKARLVVRGFQQEEIIDNTYSPVFKIQTLKILLSYCCKNNLSIDQMDVE
FT                 TAFLNSKVMSEIYIKQPLGYQDGSNRVYRLSKALYGLKESPRCWYECFNNF
FT                 VSKLGFQRSKHDYCLYAKNKINDPVYILLFVDDFLICSKDKKQIDDVKSKL
FT                 SNQFKIKDMGRVKNYIGIDIEYNYNKNGKNIMTLSQKNYIESLATKYQIKN
FT                 AKLYNTPMETNLKLEPANKLNTNVKFRNLIGELLFISSGTRPDISFSVNYL
FT                 SRFQNSYDETHFKYAMRILKYLYLTRDLNLTYTNDKTIDVMDCFVDADWAG
FT                 DTIDRKSTTGFVIRLFGNTISWKSHKQNSVTKSSTFAEYVALSESVTEINF
FT                 ICGILKIFDIKISKPIKIYEDNSGALIIAKNGNFSKNSKHIEVHYHYVNEN
FT                 YLNKIIDIVKVDSENNVADILTKSLCKLKFTKLREMLNVIKK"
XX
SQ   Sequence 4054 BP; 1707 A; 496 C; 754 G; 1097 T; 0 other;
     tggtagcagg tccgtggttt cgaaaatata attgagaagg taaagtacga gaaaagttcg        60
     ttgtaaaata aaaaagaaaa aaatggcgac gtacgttaaa aacgacgatg ttgtgatgcc       120
     agtcttcgac ggttcagact atacaagttg gaaaaaacga ctgttaatgt ttttgagatt       180
     caaggagtgc aaaaccgtta tcgacagatt aaaaacagaa aatgacgacg caaatgcctg       240
     ggacaaaatg gatgtaaagg cgacaaatta tatatatagt gccatatcaa acaagcaact       300
     tgagtatatt ggtgacttag attcggcata caaaataatt aaacggtttg acgaaatgta       360
     cttaaccaag tcgacagcgt tacaaatagt atgcagaaat accttggaaa atattaagct       420
     gcaaagctat tcagatgtgt cagaattctt taatgacttt gaaaaggctg tgaatgattt       480
     aaaagctgct ggtgcgacaa tcaaagacga agaaaaacta aattacatgt tgaaagcatt       540
     accgcaatcg tacagtcata ttggtgattt aatggatgta ttatctgaag aaaacagaac       600
     gacagaattc ctaaaaagta aaataaagat gaaagctatg gaagaaaaaa ataaagataa       660
     aaatgaagta tcaaaatcaa atgtttatgc tgcaatggaa cttaagaata gtagctgtta       720
     caggtgcggt aaaactggtc actttcagaa agagtgtcga caagcgagcg aagtcaacag       780
     aggacacatg aggcgcggat cgcaacgagg cagtcgtggc ggaaggtatc agcacaacag       840
     cagacaaaga ggaggatatc gtggcggagg acgcggatat gacaatatag gtcaaaatgc       900
     acacggaaca aattgtttca gcgtacaggt aaacacatct acaataaacg aagataatct       960
     gacagacaag actgagataa attggttact tgacagtgga tgtacaaacc acattgtaaa      1020
     caatgacaca tattttacta aatatattga tctgaagaaa ccggtaaatg tgaaagtagg      1080
     agacggtcgt atactgtcag caacgaagat gggacatgta gaagcatatt ttcaagcatt      1140
     taataaaaga tttaaagtaa cattatcaaa tgtatttttt gtcaaaaata tggaagcaaa      1200
     tttaataagt tatgcaaaaa taacggatag aaataaaatt gtatcgcatg gaaaatattc      1260
     aaagatatat aatgaatata atacattaat agctattgct ataaaagaag attgtttata      1320
     taaaatgaaa agctttaaaa ttaatcaaaa taataaaagt attaaaatat gcgcaaatat      1380
     gacaaaaaat gacaaacaaa atttaacgct aaaagaaaaa tggcatcgta cattagaaca      1440
     tgtaaatttt aattacctaa acaccttatg taaaaataaa ctactggaag gactaccaaa      1500
     cgaaattgaa tctgatttca tgaaatgtgc aatatgtata gaaaataaga tgcataattt      1560
     gccatttgaa aataatcgaa caagagcgaa ggagatctta gaaatagttc acacagactt      1620
     aaatggacct cacaaaacaa caggtaattg tggtgaaaaa tatttccttt catttatata      1680
     gatgactata gtaaattagc aaaagtatat actattaagt caaaagatca agtttataac      1740
     tgtcttgaag aatatgtaaa tgaaatcgaa aatctaacag ggaaaaggat taagaaaata      1800
     agatgcgata acggcaaaga atatctgaac tcaaatgtct atagattcat taaagaaaaa      1860
     ggaatttact taaatgtttg tccaccatac gtgcatgagt taaacggaac agcggaaagg      1920
     ttcaacagat ctatcatgga tatggcaaga tgtttattcg ctgaggcaaa agttgacaga      1980
     agatattggc cagaaatagt aagagctgct gcttatttga agaatagaag tctagccaac      2040
     actatggaga agaaaacacc gtatgaaata ttttttggag aaaagccatg tgtcaaaaat      2100
     cttaaaatct atggaagcaa aatttttgta agaatacctg aagaaagaag acaatctaaa      2160
     tgggataaaa aaagctgaac aaggagtttt gttaggatat acagaggtag gatatagaat      2220
     cctgataaga aataaaataa ttattgcaag acatgttgat attattgaag atggagtaaa      2280
     atttattagc tttaatgatg aaaatgaacc agaataagaa actaaagaag aaattataaa      2340
     ttatgatgaa gtaaagcaaa gccaaaacgt tcaagaacca gctatcgaag atgaaaagga      2400
     aaagaatgaa gaacctttaa gaagatcaac tagagaaaga aaacctccga ttcgatatgg      2460
     cgacccgtat gcgtatttac tcatacatgc aaattattgt aatgcagacg taccagataa      2520
     ctacgaggag gcgttaaatt gcagtgaagc tgaaaattgg aaaattgcaa tgaaaaagga      2580
     aatagatagt ctggaaagaa ataaaacatg gaagttagtc aagaaaccag aagataagaa      2640
     agcactagat gtcaaatgga tttataagaa aaaatcggaa gacaactaca aagcaagatt      2700
     ggtggtaagg ggctttcaac aagaagaaat catcgataat acttattcgc cagtatttaa      2760
     aatacagact ttaaaaattt tgttatcgta ttgctgcaag aacaatttaa gcattgatca      2820
     aatggatgta gagacagcgt tcttaaatag taaggtaatg tctgaaattt atataaaaca      2880
     gccactaggt tatcaggatg gtagtaatag agtctacaga ttaagcaaag ctttatacgg      2940
     attgaaagaa agcccaagat gttggtacga atgttttaat aattttgtaa gcaagctagg      3000
     ttttcaaaga agcaaacatg attattgtct ttatgcaaaa aataaaatta atgacccagt      3060
     atatatttta ctttttgttg atgatttttt aatttgtagt aaagataaaa aacaaataga      3120
     tgatgttaaa agcaaattgt caaatcaatt taaaataaaa gacatgggca gagttaaaaa      3180
     ttatattggc attgatattg aatataatta taataagaat ggtaaaaata ttatgacttt      3240
     aagtcagaaa aattatatag aatctttggc cacaaaatat caaattaaaa atgcaaaatt      3300
     atataatact ccaatggaaa caaacttaaa gttagaacct gcgaacaaac tcaatacaaa      3360
     cgtaaaattt cgaaatttga ttggtgaact tttatttatt agttcaggta ctagaccaga      3420
     tatttctttt agtgtaaatt atttaagcag attccagaat agttatgatg agacacattt      3480
     taaatatgcg atgagaattc taaaatatct atacttgaca agagacttaa atttaacata      3540
     tactaatgat aaaactattg atgtaatgga ttgttttgtt gatgctgact gggcaggaga      3600
     tacaatcgat agaaagtcca cgacaggttt tgtaatcaga ttatttggta atacaatatc      3660
     ttggaaatcg cataagcaaa attcagtaac taagtcaagt acttttgcag aatatgtagc      3720
     gctatcggaa tcagtaactg aaattaattt tatatgtggt attttaaaga tatttgatat      3780
     aaaaataagc aaacctatca agatttacga ggataattca ggtgcattaa ttattgccaa      3840
     aaatggaaat ttttctaaaa actcaaaaca tattgaagtc cattatcatt acgtaaatga      3900
     aaattattta aataagatta ttgacatagt aaaagtggat tcagaaaata acgtagctga      3960
     tatactaaca aaatctttat gtaagttaaa atttactaaa ctcagagaaa tgttaaatgt      4020
     aataaaaaag taagaataca aatgtaagga ggcg                                  4054
//
ID   Copia-6_LH-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   ADOQ01008480;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_LH_;
KW   Copia-6_LH-I; Copia-6_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-238
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008480; Positions    1010    1247.
XX
SQ   Sequence 238 BP; 70 A; 39 C; 46 G; 83 T; 0 other;
     tgttgaatgt aatacatttg tattctatgg cgcgcaaatg atatctatat atatagatag        60
     ttctagtttg atgtggtggc gctggaggca gggggcaagg cccagttgta acatgtctgt       120
     ctatgacaac gagcgtgaca agaagtccta ttccttttgt gcttaaacat atatatttta       180
     ctatattaca ataaacatta taatatcttc tcgatacaaa accgtgtcat ttctttca         238
//
ID   Copia-6_LMi-I repbase;    DNA;    INV; 4014 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4014
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3083-3083 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(541..861,993..1505,1313..2092,2059..2604,
FT                 2683..3324,3303..4013)
FT                 /product="Copia-6_LMi-I_1p"
FT                 /translation="MIMSLENSNIPITGDSIKTKLLQEVKSEVDCQTSTSE
FT                 AALHANKRNQQYDTQHQEAPDAIIAINTGIWQRIVAAERRLEVRLRPEQHL
FT                 TQHSSRHRQQKITRRRTGMIDVQKGNSLDKIQVTDILYVPQLSTNLLSVSK
FT                 IVEKGHSVSFDHRGCRIYDHKGLVATASLVNGMYKLDQPSNDKVQTKSTAL
FT                 IVDADLWHKRLGHLNKDAMEALRNGLATGISYTGTVNTPCVTCIEGNRPDF
FT                 RFRDLIQEQNVFLNLYIQIYADPCKLRQLVVLNIFLHWFGYRYFVYRYGEH
FT                 SLCNLYRGKQTRLPFSRSDTRAKRILELIHSDLCGPMQTTSIGGAKYFLTL
FT                 IDDFSRKVFLYTIRNKSQVPQIIKDFKNLVERQTGNKICILRSDNGREYVN
FT                 EALTNFLRREGIRHQTSVPYAPEQNGLAERFNRTIVEKARCLLFEADLPNR
FT                 FWGEAVSTAVYLINRSPTKALKNMTPEEAWTGRKPDLRHIRKFGSKAYVHV
FT                 PSAKRRKWDKKCTECILVGYCEESKAYRLFEPIHQKLIKAEMTNTPEAYQS
FT                 RDVIFDERKHEIDKKDVKPQETNRSFIPYTDKKQYGTEMTGIEETEQEPDS
FT                 TDANRSSTTASETDEACSESPQEEAEQPVNVHPQSSENQQEVAEQPVNVQP
FT                 QRKSSRIPRPIKMEDFITYHSKHLCPDPVTLEEALSSENCDKWLEAMEEEL
FT                 NHTRKITHGNLLFCLQTGNQKVAHRNLDWTMMKPMLQSAAKYDFDIDHLDV
FT                 VTAFLQGDLAEEIYVRIPDVDPITKTIQNMNIKRLKKAVYGLKQGSHCWNL
FT                 KLDKALISLNFKRSNADPCVYKKIQGEHILIVAIYVDDMLVFSNNPSLKTT
FT                 FKNELKERFKLKDLGEVNTVLGIRITRDRKKGILLLDQEHYINQILKKFNM
FT                 IDCNPTWTPLDNNQVLTHDMSPKTKMMKRKNENDEEKMRSIPYQEAVGSLM
FT                 YAQLGTRPDLAYPIGLVSRFSNNPGMPHWNAVKRIFRYLQATKSLKLCYSK
FT                 EEECIITGYSDADWAGDTNDRKSTTGYLFKCQGAAISWNSKKQPTVALSTT
FT                 EAEYMALTAACQEALWLRRLEQDLSPVFCRDPLKLFCDNKAAIDLSKTSGY
FT                 KGRTKHIDTKHHFIREKVEACEVVIEHVPSQLMTADIMTKPRHHSLLQELG
FT                 FQNQEDMGSSEG"
XX
SQ   Sequence 4014 BP; 1431 A; 731 C; 852 G; 1000 T; 0 other;
     ggttatgggc ccaggatata cagcagaaat attgcgcgat aatttaattt gaaattacgc        60
     gcaacacaga acgccggacg caatggcatt tgcacaatcg aattgtctgc cgcctataga       120
     taaattaatg ggcagagaaa actattctac ctggcaattc gcagtaaaaa cgtatttaga       180
     gcacgaaaat ctgtggggat gtgtgactgg cgaaattgga gacgagaaaa aagtatgtac       240
     ggcaagggcc aaaataattc tgtcagtgca cccgtcaatt tacgtgcatt tgcaagaaac       300
     taaaacgcaa aggagacatg ggataaactg aaacaagttt atgaagattc tggtctttat       360
     agaagagttg gacttctaca taatctacta acaacacgtc tggaaaactg ttcatcagtg       420
     gaagaatatg tatcaaaaat tatatctaca tctcacaaat taaacgcgct cagttttgaa       480
     gtaaaagaag aatggattgg ttgtatcctg ctggcgggac ttccagacga gtataaacca       540
     atgataatga gtttagaaaa ttcgaacatt cctatcaccg gagattctat taaaacaaag       600
     ttgttacaag aagtaaagag tgaagtagat tgtcaaactt ccaccagcga agcagctctt       660
     catgccaaca aaagaaacca gcagtatgac acacagcatc aagaggcccc cgatgctata       720
     attgcaataa atacgggcat ctggcaaaga attgtcgcag cagaaagaag actggaggta       780
     agacttcggc cggagcagca tctcactcaa cattcttcac gacaccggca gcagaaaatc       840
     acacgccgac ggactggtat gtagattcag gtgcttcggc acacatgtct aaatatccgt       900
     gtcaagaaaa tagtgtcaca gcagtgtcaa attcgcatgt tgctgtggct aataatgaac       960
     atttgccagt gaaagaaata aagtgtttgt aaattgatgt tcagaaaggc aattctttag      1020
     ataagattca agtcactgac atattgtacg ttccacagtt gagtactaat cttctgtcag      1080
     ttagtaaaat agtggaaaaa ggccactctg tttcttttga tcatagaggt tgtcgtattt      1140
     atgaccataa aggtttagta gccactgcat cgttagtaaa tgggatgtac aagctggatc      1200
     agccaagtaa cgataaagta caaacaaagt caaccgcact aattgtagac gcagatttgt      1260
     ggcacaagag attggggcat ctaaataaag acgctatgga agctctacgt aatggtttgg      1320
     ctaccggtat ttcgtataca ggtacggtga acactccttg tgtaacttgt atagagggaa      1380
     acagaccaga cttccgtttt cgcgatctga tacaagagca aaacgtattc ttgaacttat      1440
     acattcagat ctatgcggac ccatgcaaac tacgtcaatt ggtggtgcta aatattttct      1500
     tacactaatt gacgattttt caaggaaagt gttcttgtat accatccgaa ataaaagtca      1560
     agttcctcag ataatcaaag actttaaaaa cttggttgaa agacaaacgg gcaataaaat      1620
     ctgtatattg cgctcagaca acggacgaga atacgtcaat gaagcgctga cgaatttctt      1680
     aagaagagaa gggatccgtc atcaaacgtc agttccatat gcgccggaac agaatggttt      1740
     ggcagaaaga ttcaaccgca caatagtcga aaaagcaaga tgcttattat ttgaagctga      1800
     tcttcctaac agattttggg gagaagcagt ttcaacagct gtgtacttga ttaatcgatc      1860
     tcctactaaa gctctaaaaa atatgacgcc tgaagaggcc tggacaggta gaaagccaga      1920
     tctcagacat atccgaaaat tcggaagtaa agcttatgtt catgttccca gcgccaagag      1980
     gagaaagtgg gacaagaaat gtaccgaatg cattcttgta ggatattgtg aagagtctaa      2040
     agcatataga ttatttgaac caatacacca gaagcttatc aaagcagaga tgtgattttt      2100
     gacgaaagaa aacatgaaat agacaaaaaa gatgttaaac cacaggagac aaatcgctca      2160
     tttattccat atactgacaa gaagcaatat ggaacagaaa tgaccggaat agaagaaact      2220
     gaacaggaac ctgattctac tgatgcaaat agaagttcca caacagctag cgaaactgat      2280
     gaagcttgtt cagaaagccc acaagaagaa gcagagcaac ctgtgaatgt acatccacag      2340
     agttcagaaa atcaacaaga agtagcagag caacctgtga atgtacagcc acagagaaaa      2400
     tcttcaagaa taccacgacc aataaagatg gaggatttta tcacttacca ctccaaacat      2460
     ttgtgtccag atccagttac actagaagaa gcattaagct cagaaaattg tgataaatgg      2520
     ctagaagcaa tggaagagga actcaatcac acaaggaaaa taacacatgg gaacctgcta      2580
     ttctgcctcc agacaggaaa ccaataagta ccaaatgggt ctttaagaca aaaaaagatt      2640
     tagcaggaca cattgtgcgc tataaagcta ggttagttgt aaaaggttgc gcacagaaac      2700
     ctggactgga ctatgatgaa acctatgctc cagtcagcag ctaaatatga ctttgacata      2760
     gatcatttgg atgtggtcac tgcttttctg caaggtgatt tggcagaaga aatttatgta      2820
     agaattcctg atgtggaccc aattaccaaa acaatacaga acatgaacat taaaagactg      2880
     aagaaagctg tatatggttt gaaacaaggg agtcactgtt ggaatttgaa gttagataag      2940
     gcattaatca gtttgaattt taaaagatca aatgcagacc cttgtgtgta taagaaaatt      3000
     caaggggaac atattttgat tgtagctatt tatgttgatg atatgcttgt gttcagtaat      3060
     aatccatcac tcaagacaac cttcaaaaat gagttgaaag aaaggtttaa gctgaaggat      3120
     cttggtgaag ttaacactgt tttaggcatc cgtatcacaa gagatcggaa gaaaggaatc      3180
     ttactcttag atcaagagca ttatattaat caaattttga aaaaattcaa catgatagac      3240
     tgtaacccta catggactcc acttgacaat aatcaagtgc tcacccacga catgagtcct      3300
     aaaacgaaaa tgatgaagag aaaatgagaa gtatacctta tcaagaagca gttggcagcc      3360
     tgatgtatgc acaactaggg acaaggcctg acttagcata tccgattggt cttgttagca      3420
     gattttctaa taatccaggc atgcctcact ggaatgcagt gaagagaatt tttaggtacc      3480
     ttcaagccac caaaagcttg aagttatgtt actcaaaaga agaagaatgt atcatcaccg      3540
     gttacagtga tgcagattgg gcaggggaca ccaatgacag gaaatcaact actggctacc      3600
     tatttaaatg tcagggggca gctatctctt ggaacagcaa aaaacagcct actgttgcac      3660
     tgtcaacaac agaagctgag tacatggctc tgacagctgc ttgtcaagaa gcactttggc      3720
     tgagaagatt agagcaagat ttatcgcctg ttttttgcag agatccactc aagttatttt      3780
     gtgacaacaa agccgcaatt gacttgtcaa aaacaagtgg ttataaagga cgcacaaaac      3840
     atatagatac caaacaccac tttataagag aaaaagtaga agcttgtgaa gtagttatag      3900
     aacatgttcc ttcacaactg atgactgctg atataatgac gaagcctcga catcattcac      3960
     tgctgcaaga acttgggttc caaaatcaag aagatatggg ttctagtgag ggtg            4014
//
ID   Copia-6_LMi-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-185
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3084-3084 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 185 BP; 55 A; 27 C; 33 G; 70 T; 0 other;
     tgagaaatga gaacccatat gtgactcgca aataatgtct ttggcgctgt tgccatggtt        60
     taaaaaaaac tttttttgtc tttttagatt tgttcaatgt gcgactgtac tgtgtgttta       120
     atatttggtt tgcagaaata aatgtaacta taatttcaaa ccactgcgta ttatcattgc       180
     taaca                                                                   185
//
ID   Copia-6_SI-I repbase;    DNA;    INV; 4105 BP.
XX
AC   AEAQ01011805;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_SI_;
KW   Copia-6_SI-LTR; Copia-6_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4105
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011805; Positions    4632     528.
XX
CC   Positions [1574-2074] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..2434
FT                 /product="Copia-6_SI-I_2p"
FT                 /translation="MEFHGIEKLRGAENWNTWKFTVRNLLRGTEDAYEVCT
FT                 GEIEKPKSLEATASAEQRVMYQTNLKIWDKADRAASQIIVKTLETKVTTLL
FT                 VMCECARDMWLKLHAVFEQQTKQAAHTVQSEFFGFNKNQSDDMVSHIAKFE
FT                 NLVLRMQQLNVRPDESSVMVKLLDSLPDDYESLRQAWWARPEEQQTLTNLI
FT                 EILTSDDKRRQQRMDKQEEMVALVAKVQGKNECDKMQRDGKKRQSKKPVES
FT                 TVVKGKNKFTQYKCHNCGGIGHFRKNCPSKKQKQKDDDEAFVCEILNTELD
FT                 DSWIVDSGATDHITHRGEWFSTFEYFKTAEIIHIGNKSTMDALGKGTIKFE
FT                 ALVSGKWLSCRMENVLYVPDARRNLFSVTSALDRGMAFKSSKNGCEFTKNG
FT                 IVKAQGVRVGQLFKMEIRIKPPKTSCVKEVNLSSRDSLRIWHERLGHQNMY
FT                 HVKKILRKHDIEFKDDGQFCGACVEGKQHRNTFKERQQRANEPGEIIHADL
FT                 CGPMECTSLGGAKYFVCFTCDYSRLRIVYFLKEKSETAGKIAEVLQIIKTN
FT                 FGRPMKTLLCDGGTEFKNSKVQELLSSNGVTLVVSNPHTPQQNGCAERTNR
FT                 TVVDIARTMLLAKNLPKHLWAEAVNSAVYILNRTGPSSLDGKTPYELFTGK
FT                 SVHLNKFHTFGTGCFVHVPKVQRKKWDAKGQHGILVGYSDNIDGFRIWLKS
FT                 RSKIIRSRDVVFEPETTEDLLALFLLIQTLSRRLTIRRNVLKTLTLTHPTH
FT                 RVIHQMIQRRIQRWIRRKI"
FT   CDS           2509..4059
FT                 /product="Copia-6_SI-I_1p"
FT                 /translation="MLAEMDEPRNYTEATKSEECHHWKAAMEDELASLEEN
FT                 SAWSLVELPTGCRSISNRWVYRIKRDAEGKVSRYKARLVARGFSQREGIDY
FT                 NDTFSPVARFDTIRAILSIAANEQLEIAQFDVKTAFLNGIVKEDIFMDQPQ
FT                 GYEDGTNRVCKLHKSLYGLKQSPRCWNKRFKNVSTNFGLQESSADPCLFYR
FT                 IIGNEKLIVVLYVDDGLVVATKQTDIQEFLIRLKSEFKITVETVGCFLNVL
FT                 INRFEDGSISISQKTYAESILRRFNMEEARFVSTPMEKCHQAEEVIDTKIT
FT                 SAPYREAVGCLMYLAICTRPDITYAVNYVSQFLEKPEERHWTMVKRIMRYI
FT                 KGSLTLGVYYDAHAKGGKLKIYSDADYASDSNTRRSVSGIACNYSGGVILW
FT                 ASRRQQSVSLSTTEAEYVAASEAAKDAVWLNQLYKEISPLETAPVLYVDNV
FT                 SAIKLTKNPSFHKRSKHIDVRFHYVRERVQEGQLKIEYVPSKEQAADILTK
FT                 VIPRIQFERLRKMLGMTNIDR"
XX
SQ   Sequence 4105 BP; 1335 A; 702 C; 964 G; 1104 T; 0 other;
     atatggtagc agagcgtggt tcgtgaatgg attgaagact tcgcgtgtaa taagtaagga        60
     aagaagttaa acgtgaacgt actctctcga atttgatact tgctggaaat tttacacgag       120
     caacatggaa ttccatggaa ttgagaagct gcgtggtgcc gaaaattgga acacttggaa       180
     attcacagtg agaaatctgc tgcgaggaac tgaagatgcg tatgaggtat gcaccggtga       240
     gattgaaaaa ccgaaatcgc tggaagctac cgctagtgca gaacagcgag tgatgtatca       300
     aactaaccta aaaatctggg ataaggcgga tcgtgcagcg agccagatta ttgtcaagac       360
     tctggaaacc aaggtaacga cattgttggt tatgtgtgag tgtgcaagag atatgtggct       420
     caagctacat gcagttttcg aacagcagac gaagcaagct gctcacacgg ttcagtcaga       480
     atttttcggt tttaataaga atcaatccga tgatatggta tcgcatattg caaaatttga       540
     aaatttggtt ttacgtatgc agcagttgaa tgtgaggcca gatgaatcat ctgtgatggt       600
     taaactatta gattctttgc cagatgatta tgagagtctc cgacaggcct ggtgggcaag       660
     accagaggaa caacagacgc ttacaaattt gatagaaata ctgacatccg atgacaaacg       720
     acgacaacaa cgaatggata agcaggaaga gatggtcgct ctggtagcca aggttcaagg       780
     gaaaaatgaa tgtgacaaga tgcagcgcga cggaaagaaa cgtcagtcga agaaacctgt       840
     tgaatctaca gttgtaaaag gtaaaaataa atttacacag tataaatgcc ataactgtgg       900
     tggaataggc cactttcgta agaactgtcc aagcaagaag cagaaacaga aggatgacga       960
     cgaggcattt gtatgtgaaa tattgaatac tgaacttgac gatagctgga ttgttgattc      1020
     tggtgcgacg gatcatataa cacaccgtgg tgagtggttt tcgacttttg aatattttaa      1080
     aactgctgaa attattcaca ttggtaacaa gtcaacaatg gatgcacttg gcaaaggaac      1140
     tatcaagttt gaagctctgg ttagtggaaa atggttatct tgtcgtatgg aaaatgtttt      1200
     gtatgtacca gatgctcgta gaaatctgtt ttcagtgacg tcagcacttg atagaggtat      1260
     ggcattcaag tcatctaaga atggatgtga atttacaaaa aatggcattg ttaaagcgca      1320
     aggcgttcga gttggtcagc tgtttaaaat ggaaattcgt atcaagccac caaaaacatc      1380
     atgtgtcaag gaagtaaatt tatcgtcgag ggattcattg cgcatttggc atgaacgatt      1440
     aggccatcag aacatgtatc atgtgaagaa gattttaagg aagcatgaca ttgaatttaa      1500
     ggatgatggt cagttttgtg gagcctgcgt cgaggggaag cagcatcgta acacttttaa      1560
     ggaacgtcaa caacgagcaa acgaaccagg agagatcatt catgcagatc tctgtggtcc      1620
     gatggaatgt acatctctgg gaggagcaaa atattttgta tgctttacat gcgactattc      1680
     tagattacgc atagtttatt tccttaaaga gaaatcagaa actgctggta aaattgcaga      1740
     agtattacaa attatcaaaa ctaattttgg acgtcccatg aaaactctgc tatgtgatgg      1800
     cggtacagaa tttaaaaaca gtaaagtaca agaacttctg tcatcaaatg gtgtaactct      1860
     tgttgtttct aatccgcata cacctcagca aaatggctgt gctgagcgta cgaatagaac      1920
     agtagtggat attgctcgaa caatgctcct ggcgaagaac ttacctaaac atttatgggc      1980
     ggaagcagta aattcagccg tttatattct taatcgaact ggacctagta gcctcgatgg      2040
     aaaaacgcca tatgaattgt ttaccggaaa aagcgtgcat ctcaacaaat ttcacacttt      2100
     tggtacagga tgttttgtgc atgtgccaaa ggttcaacgt aagaaatggg atgcaaaagg      2160
     acaacacggt atacttgttg gttactcaga taacattgat ggtttccgca tatggctaaa      2220
     gtctaggagc aagattattc ggagcagaga tgtagtgttt gagccagaaa caacggagga      2280
     cttattagct ttatttctgt tgatacaaac attgagccgg aggctaacga tcagaagaaa      2340
     tgtattgaag acgttaacat tgactcatcc gactcatcga gtaattcatc aaatgattca      2400
     gcggaggatt cagcgttgga tccgaaggaa aatttaatac cggaaactcc aaaacgagat      2460
     ctgcgagata ggaataagtt gaatccacca aaacgattga ttgaaatcat gctggctgaa      2520
     atggacgaac ctcggaatta cactgaagcg actaaatcag aagaatgtca tcactggaaa      2580
     gcagcgatgg aagatgaatt agcatcgttg gaggaaaatt cggcttggtc tttggtcgag      2640
     ttaccaactg gttgcagatc tatttcaaat cgctgggttt atcgcattaa acgtgacgct      2700
     gaaggaaaag tcagccgtta taaagctcga ttagttgctc gaggttttag tcagcgcgaa      2760
     ggaattgact ataatgatac attcagccct gttgctagat ttgatacaat tcgagcaata      2820
     ttaagtattg ctgcgaatga gcaacttgaa attgcacagt ttgatgttaa aactgccttt      2880
     ctaaatggca tagttaaaga agatatcttt atggatcaac cacaaggcta cgaggatggc      2940
     accaatcgtg tctgtaaact ccataaaagt ttgtatggtt tgaaacagtc tcctagatgc      3000
     tggaacaaac gcttcaaaaa tgtgtcaact aactttggat tgcaggaaag ctcagcagat      3060
     ccatgtctat tttatcggat aatcggtaat gagaagttaa tagtcgtatt atatgttgac      3120
     gacggtcttg ttgttgctac aaaacaaaca gatattcaag agtttttaat cagacttaaa      3180
     agtgaattta aaataaccgt tgaaacagtc ggttgttttt tgaatgtgct catcaatcgt      3240
     tttgaagatg gttcgatttc tatttcccaa aagacctatg cagaaagtat tctgcgaaga      3300
     tttaatatgg aagaagctcg ttttgtatca actccaatgg aaaaatgtca tcaagcagag      3360
     gaagttattg acacgaagat cacgagtgct ccctatcgtg aagcagtggg gtgcttgatg      3420
     tatttagcca tctgtacacg accggatatc acttacgcag tgaattacgt ctcacagttt      3480
     ttggaaaaac cagaagaaag acattggaca atggtcaagc ggatcatgag gtatatcaaa      3540
     ggttcgctaa cgttaggcgt ctactatgat gcacatgcca agggtggcaa attaaaaatc      3600
     tacagcgatg cagactatgc gagtgattca aatactcgac gttcagtcag tggaatagct      3660
     tgtaactaca gtggtggagt cattctctgg gcaagcagac gtcaacagag cgtttcctta      3720
     tcaacgactg aagccgagta tgttgccgct tcagaagcgg ccaaggatgc tgtatggtta      3780
     aatcaactat acaaggaaat atctccttta gagactgctc cagtactcta cgtggataat      3840
     gttagcgcca tcaagctaac aaagaatcct agtttccaca agcgcagcaa gcacatagat      3900
     gtgcgctttc actatgtacg cgaacgagta caagaaggac aactgaagat tgaatatgtt      3960
     ccaagcaaag agcaagcagc ggacatcctg acgaaggtca ttccgcgtat acagtttgaa      4020
     agactacgta aaatgttggg aatgactaat attgatcgtt aaattgtttt ctttagttct      4080
     tttgattttg aacatttagg ggaag                                            4105
//
ID   Copia-6_SI-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   AEAQ01011805;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_SI_;
KW   Copia-6_SI-I; Copia-6_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-242
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011805; Positions     527     286.
XX
SQ   Sequence 242 BP; 64 A; 52 C; 26 G; 100 T; 0 other;
     tgttgtaata aatagtttaa aatcagttct tatatgtatt atgtctatgg tcgagtcact        60
     cttgatttct catattggta tcactgttcc ctctctataa taccttttta cttcgagtct       120
     ttctctcttt tcattcgttc ggtcatcaca cacatatctc tgtactaaaa ccacattgtt       180
     gttctttaat aaatcgtctt ctatcaagca tattgatgta ccacaatttt ccacacaaat       240
     ca                                                                      242
//
ID   Copia-6_TrVa-I repbase;    DNA;    INV; 6031 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-6_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6031
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 244-244 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           980..5329
FT                 /product="Copia-6_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MAGTTDEIRIPIFDGKDYTRWKYKLLLHLEVRECKTV
FT                 ITDQRPTETSEADWNKLDAKARDYIVNLVSNDIFDVIINEPNAKAIILKLD
FT                 SIYQSQSTANKVQIRKRLIELKLAENEDPNPFFLNFEKLVNELKNSGVTFN
FT                 EEEKLATLLSALPNSYSHLIDIIDSIATDKFEYLKNRIISNYGNRSKEEAS
FT                 NEFSDRLSSFHLSRRGNFHSNKHRSRSRNHHSSMRNNYHRSKSYRSYRHSN
FT                 SKSPSRHHNKNNQRCSQGCDNFRHRNSSPESDDDHRSSRRYKSNQTNFSSK
FT                 RNGYSNNSSSNRSHSNYSKGHKDQSYSNKESYNKRSFSVNRNDENSCSSSN
FT                 LTISSENEINLDDPNLSNSKYYANVTCRINPSNFETNFSCRNSSVSQPNSE
FT                 IIEWLLDSGCSDHIVNSDKYFAKSEVLNDPIKIGLGDGSPLIANLKGDINV
FT                 KYQVGDEWFSVTIYDVFYVPDMKSNLLSVSRITDKGNHLKFNNNQGILYSS
FT                 EGEIFGVAERHKNLYRLLSRIQGTKGILANNLEKQTVSVKEEWHKKTGHMS
FT                 FPNLNKLIISKCALGLPEKLNEEQLQCEICLESKMANLPFKNIRWQAKRPG
FT                 EIIHSDVCGPFKQTGYKGEKYFCTFVDDYSKFSIVQPIKSKSEVFASFKES
FT                 SSFFLNRTGNTIKELRCDNGKEYINNQFEDLARKWGFQIKPCPRYRHELNG
FT                 TAERLNRTILDRTRCLFNESNLPKSYWPLVVRTVNFLKNRTLINLTENKTP
FT                 FEIIYERKPDLSFLKIYGSDCYVRVPEEIRSSKFAPKAEKGKLVGYEDNCY
FT                 VILVNGKIVKSRDVKFLDQNTKSIQSQISNLKSRQCYDEESKNQKFVRFSL
FT                 EPESETSDAETETEIGQHSTPTSQNSPTDISTTSSSDFRTPSPSLPIHRIA
FT                 NPSDHETTQNYKARLRDRKTLKLPRKLADHEIFTNFVDINVPFNYEEALRC
FT                 DNSENWINAMEEELKAHRENNTWSIVKEPKSQNIIDVKWLYRMKDSNKFKA
FT                 RLVARGFQQEFHQNEEIYSPVAKLTSIKMLLSLSAVQNLSIHQMDVQTAFL
FT                 NGEINEDVFIKAPKCLNVKEGYCLKLNKALYGLRESPRSWYNCFDRFMNFL
FT                 NFHRSNFDCCLYFKDLNSIPVYVLIFVDDILFFSKDKNKINSLKKQLKERF
FT                 KMKDFGQINKYLGIQAVKEQDNSIKLNQTDYICSVAEKFNVIHSKLYDTPM
FT                 EQNLKLLPAATVKDETLYRSLIGALLFIAMNTRPDVAFAVNYLSRFQNSCD
FT                 ETHFKYALRVLKYLLKTSDLNLIYNANTSPNQDILSCFVDADWAGDPVDRK
FT                 STTGYVIKLYGNPILWKSRKQKSVTKSSTEAEYLALSDATSELKFLSSLLS
FT                 EINIVLKQPIPIYEDNLGAVVIANKGNFSKNSKHIEVHNHFVNESVNNGLI
FT                 NVIKISSDENEADILTKSLGKQNFSKFRKSFNLIEH"
XX
SQ   Sequence 6031 BP; 2024 A; 1060 C; 1038 G; 1907 T; 2 other;
     tggtagcagm gmgtggttcg ttcgtcggta atcgtctata attaaaaagt ttcggaaatg        60
     tgtcggcatt acagatcccg aaaaatcgcg tagcgacaac actcggccag ctataaatta       120
     agttttaaag tcccgggaca cggctaagtt ctgtatttta cattgtgatt tcattactta       180
     gggcttttag ccattatcat taagtttctc ttttacttgc gcaaactgca catctgatcg       240
     acggcagaat tcctttctcc atgccttgaa cttcgaaaat ttgaggcagc ctattttcag       300
     tatcacagct catttgattt gtgttttatc tgtctgtgaa aatctttttc actctgtgaa       360
     atgaagtaga tttacgttac aacatctact tttcaactgg ttgaccactt gtgccacaaa       420
     gtgaagggtt tgacctcctc gccagagaat taaaaggagg aaaggcgata gcatctttaa       480
     cctcaatcat tgctcaatcc tcatatcagg cttacaatct aggaaggatg ctggatttca       540
     aaattcactg gtggtaaact gtgatctgta aaattctagt ctcacgaagg atggtgttgt       600
     aaaggaaatc tagtcaatct ccaaggaatt cgtctaattt tcgttgtaaa ggacccaaat       660
     caatctccga ggaatattct aatctacgtc gtaaaggatc caaatcaatc tccaaggaaa       720
     tcgtccaatc tacccacatc tgtctgcgtg ataatctgta tgtactttta aatttgttaa       780
     catgtggaaa tttcccacca attttgctca tctagtcatt ttatgtgttt acagtctacg       840
     ttatatctac agtcatatgt gtttcttatc aaagtgttaa tatgcctctc tctgggtgtt       900
     ctctttcctc ttgtattttt tttgctgaat tcatttacga tcattgtttt cacaaaatat       960
     ttcttaattg gttgttaata tggccggtac cactgatgaa attagaattc ctatctttga      1020
     tggtaaagac tacacacggt ggaaatacaa attactgtta caccttgaag ttagagaatg      1080
     taaaactgta attactgatc agcgtcctac agagacatcg gaagctgatt ggaataaatt      1140
     ggatgcaaag gccagagatt acatcgtaaa ccttgtgtcg aatgacattt tcgatgttat      1200
     cattaacgaa ccaaatgcga aagcaatcat tttaaagttg gattctattt atcaatcgca      1260
     atctacagca aacaaagtcc aaattaggaa aaggttaatt gaattaaaac ttgctgaaaa      1320
     cgaggatcct aacccctttt tccttaattt tgagaagctt gtgaatgagt tgaaaaactc      1380
     gggtgttact ttcaacgagg aagaaaaatt agcaaccttg ttgtcggctc tacctaattc      1440
     atattcccat ttgatcgata ttattgattc aatagcgact gataaatttg agtatctcaa      1500
     gaatagaata atttcaaatt atggaaatag aagtaaagag gaggcctcaa atgaattctc      1560
     agataggtta agctcatttc atttaagtag acgaggaaat tttcactcga acaagcatcg      1620
     atctcgctct agaaatcatc attcttcaat gcggaataac tatcatcgct cgaaatccta      1680
     taggtcatac cgccattcaa attccaaatc tccttcacga caccacaata aaaataatca      1740
     acgttgctct caagggtgtg ataattttag gcatcgaaat tcttcaccgg aatcagatga      1800
     tgatcatcgt agttctcgtc gttataaatc aaatcaaaca aatttctcat ctaagagaaa      1860
     tggttatagt aacaactcat catcaaatcg gtcacattcc aactattcca aaggtcataa      1920
     agaccaaagt tattctaaca aagaatccta taacaaaaga tcttttagtg taaatcgtaa      1980
     tgatgaaaat tcttgttcct cttcaaacct cacaatcagt agtgaaaatg aaattaactt      2040
     agatgatcct aatctttcaa attcaaagta ctacgctaac gttacctgta gaattaaccc      2100
     ctcaaatttt gaaacaaatt tttcttgcag aaattcatca gtttcgcagc ctaatagtga      2160
     gattattgaa tggttgttgg actcaggatg ttctgaccac attgtaaact cggataagta      2220
     ttttgccaag tctgaagtcc taaatgatcc aataaaaata ggtttaggtg acggttctcc      2280
     gttgatcgcc aatttgaagg gagatataaa tgtcaaatat caagttggtg atgaatggtt      2340
     ttccgtaacc atctatgatg tattctatgt acctgatatg aaaagtaatt tactaagcgt      2400
     gtcaagaata acagataagg gaaatcatct gaaattcaac aataatcagg gcatcttgta      2460
     ctcttctgaa ggtgaaatct ttggtgttgc tgaaaggcac aaaaatcttt ataggctatt      2520
     atcaaggata caaggcacaa aaggtatcct tgctaataat cttgaaaaac agacagtttc      2580
     agtcaaagaa gaatggcaca agaaaacagg tcacatgtcc tttccaaatc taaataagct      2640
     aattatcagc aaatgtgcac taggtttacc agaaaagcta aacgaagaac aactgcaatg      2700
     tgaaatatgt ttagaaagca aaatggctaa tcttccattt aaaaacattc gttggcaagc      2760
     aaaacgtccc ggtgaaatca ttcactctga tgtttgcggc ccgttcaaac agactgggta      2820
     caaaggtgaa aagtacttct gcacatttgt cgatgattac tccaaattct ctattgttca      2880
     gccaattaaa tctaaaagtg aagtcttcgc tagcttcaaa gaatcttcta gcttcttttt      2940
     aaatcgaact ggtaatacaa ttaaagaact ccgatgtgac aacggaaaag agtatatcaa      3000
     caatcagttt gaagatttag ctcgtaagtg gggatttcaa ataaaaccct gcccacggta      3060
     ccgtcatgaa ctgaacggaa cagctgaacg cctgaatcga actatacttg atcgtaccag      3120
     atgcttgttt aatgaatcaa atttacccaa aagttattgg cccttagtag taagaactgt      3180
     aaattttttg aaaaatagaa ctttaattaa tttaacagaa aataaaactc cgtttgaaat      3240
     tatctatgaa cgtaaacctg acctttcttt tttgaaaatt tatggttctg attgttatgt      3300
     tagagttccg gaagaaatca ggtcctccaa atttgctccc aaagcagaaa agggaaaatt      3360
     agtaggctat gaagataatt gttacgtaat tttagtgaat gggaaaatcg tcaaatcccg      3420
     tgacgtaaaa tttttagatc aaaatactaa gtctattcaa agtcaaattt caaatttgaa      3480
     atctaggcaa tgttacgatg aggaatctaa aaatcagaaa ttcgttagat tttcgttgga      3540
     gcctgaaagt gagacctcgg atgcggaaac tgaaactgag atcggtcaac attcaactcc      3600
     tacttctcag aactctccga ctgatataag taccacctca agttcagact tccgcacccc      3660
     aagtcccagt ttacctattc atagaatagc aaatccttct gaccatgaga ctacccaaaa      3720
     ctacaaagct cgtctaagag ataggaaaac tcttaaacta cctagaaaac tggcggatca      3780
     tgaaatattt acaaattttg tagacattaa tgtgcccttt aattatgaag aagctttaag      3840
     atgtgacaat tcagaaaact ggattaatgc catggaagaa gagttaaaag cccataggga      3900
     aaacaacact tggtctattg tcaaagaacc caagtcacaa aatattattg atgtaaaatg      3960
     gttgtatcga atgaaggata gcaataaatt taaagcaagg cttgtagccc gcggatttca      4020
     gcaagaattc catcaaaatg aagaaatcta ctcgcctgtc gccaaattaa catcaataaa      4080
     aatgcttttg tctctctcag ccgtccaaaa tttaagtatt catcaaatgg acgttcaaac      4140
     agctttttta aatggtgaaa taaacgaaga tgtctttatt aaagccccta aatgtctaaa      4200
     tgttaaggaa ggatattgtt taaaattaaa caaggcttta tatggcctaa gagaatctcc      4260
     gcggagctgg tacaattgtt ttgatagatt tatgaatttt ctcaactttc atcgctcaaa      4320
     ctttgattgc tgtctttact ttaaagacct aaattctata cctgtttatg tattaatttt      4380
     tgttgatgac attttatttt tctcaaaaga caagaacaaa ataaacagtc tgaaaaagca      4440
     attaaaagaa cgctttaaaa tgaaagactt tggtcaaatc aataaatatc ttggtatcca      4500
     agctgtaaaa gagcaggata actctattaa attgaatcag actgattata tttgttctgt      4560
     ggcagaaaaa ttcaatgtca tccactcaaa attgtatgac actcccatgg aacagaactt      4620
     gaaacttctt ccggcagcca cagtaaaaga tgaaactctg tatcgcagcc taataggcgc      4680
     tttattgttc atagcaatga atacaagacc cgatgtagca tttgcagtaa attatctctc      4740
     taggtttcaa aattcatgtg atgaaacaca ttttaagtac gccttgcgtg tcctaaaata      4800
     tttgcttaaa acttctgatt taaacctgat ctataatgct aatacctctc caaatcagga      4860
     tattttgtct tgctttgttg atgcagactg ggcaggtgac ccagtggaca ggaaatcaac      4920
     aactggttat gtcatcaaac tgtatgggaa tccaatttta tggaaatcgc gcaagcaaaa      4980
     gtctgtaact aaatcgtcaa cggaagctga gtatttagct ctatcggatg ctacatcgga      5040
     actcaaattt ctttcttctc tcttaagtga gattaatatt gttttaaaac aacctattcc      5100
     tatttacgag gataacctag gtgcggtagt aatagctaac aaaggtaact tcagcaaaaa      5160
     ctccaaacat attgaagtgc acaatcactt tgttaacgag agtgtaaata atggtctcat      5220
     taatgtaatt aaaatctcat ctgacgaaaa tgaagcagat atacttacta aatccctagg      5280
     gaaacagaat ttctcaaaat ttcgtaagtc atttaacctc atcgagcatt aattgaaatg      5340
     tcagcaaatt tttatgtatt gtgttttgac aatgataaaa aaaaaaaatc ctcaaattgt      5400
     ctagtatttc ggtatgtatt ttaaaattat ggctagcgtt tatgtgtcta gtattttggt      5460
     atgtatttga aatagtgtat agcgttttcc tctggagaaa acttattgca ctttatgtat      5520
     gtgctcaatg tcaagtattc gtgtaatatt cgtgtgtgaa tttgaaaaaa aaaaaaaaaa      5580
     aaaaaaaaaa aatgtctcac gttttctgtt gttgaaaact tgttgttttt atgtgtgtgc      5640
     tcattttaaa atgattttat tatctgatgc agttgatatt tttcatagta tgatcgataa      5700
     gataataact tcttgaacgt gtcatttcgg tgcgctcttt tctaaatttt ttttttcact      5760
     tcttttattt tgatgtagct tgggatttgc aaccagctaa ctgtccacta gctgattgta      5820
     aatccaaagt tatgtctgga aatgaacgtg tgaactggac attcacttgt ttgtaaccaa      5880
     tagtaaattg ataaattagc ttagcgcact gaaacgcgct cttcgtgaat actttaaagt      5940
     tcaagaacca aattcttttt ttatgtgtaa tttcgaatga gtttattacg ttactcttac      6000
     gaattttaag tgctcccaaa ttaagggggc g                                     6031
//
ID   Copia-6_TrVa-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-6_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-222
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 227-227 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 222 BP; 54 A; 43 C; 33 G; 92 T; 0 other;
     tgttaagtta tatgtgtaat ttggcatcac tgcattgagt cagctgagct cttcatgtta        60
     ggctcaactg ttgacttgta tacttactct ctatagtccc gagcaccgtg ctagccgtgt       120
     atcacatttg tattatattg ttatatcatt tatccgaata tattttgcca atcattaatt       180
     atgtgtcttc tcatcttttc tatcattaac tgattcttaa ca                          222
//
ID   Copia-70_AA-I repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-70_AA_;
KW   Copia-70_AA-LTR; Copia-70_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2614-2614 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1509-2033] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4094
FT                 /product="Copia-70_AA-I_1p"
FT                 /translation="MADQQRFPLPKLSNHNYQSWKFRMEMLLVREDLWDVI
FT                 SQAKPEPVTNDWNKADLKARATIGLCIDDSQTSLVRSCTSAKDAWQALKDY
FT                 HDKGSEVYLLKKLTHLELREDGDMEGHLQQFTELLQRIADVGDPIPDKLQV
FT                 AMLLCSLPDSFDALVTALEQRPSAELTLELVKAKLLAEAEKRRERSGSSGA
FT                 AGGNALKVEYRSKNRSSRHDGGAKNNQETRVCFLCKKPGHLKRNCRSQQKA
FT                 SGRKADEANQVKDDSAKAKQVQNVFDGPLAWIAGKVEPTSWFVDSGASRHM
FT                 TGSRGFFDVLQESKGMSVMLADGEKAVVKGIGSGRITGVKDDGSPVDITLS
FT                 DVLYVPKLASGLLSVSTLTNKCFNVVFGENGCEIRKNSGEIAVVADRYGSL
FT                 YRLRVPDQAMVSVDGAHTLNCQHTWHRRLGHRDVEVIRAAHKNGAADGMKL
FT                 VDCGVRTVCRCCLEAKMPRTPFPKTADRGSKEILDVVHSDVSGPLATTPSG
FT                 NQYFLTFIDDYSRMAFVYLLRRKSEVAEKVKDFVLFCKTQIGKTPRVLQSD
FT                 GGGEYVAKELQGFLRSEGIVSQFTAPYSPQQNGVAERRNRYLKEMTMCMLL
FT                 EAGLDAKYWGEAVLTATYLQNRLPSRSIGMSPFERWYGRKPSFEHLKIFGS
FT                 EAWVQIPADKRKKMEVKARKMMFVGYSNQHKAYRFLDIDSGRITISRDVRF
FT                 VENLEFGLPQVAERAPAEPKKVEDTDSMVELEPLPKTIRRPDSDEEEDFHD
FT                 TAEACAQDDGEADAEQTVGCPVNQRPELRRTTRGALPARFSDYVMGMVALE
FT                 TDEPSTLKEAITCAEKKEWIKAMSEEYSSLMSNGTWALVDPPAKRNVIGSK
FT                 WVYKRKYDADGNVERFKARLVAQGFTQRIGTDYDEIFAPVAQQCTLRVLLT
FT                 VAGRRNWIVKHLDVKSAYLYGTLTEEIFMRQPPGFAVKGKEHQVCRLRKSI
FT                 YGLKQAARVWHRTISDILTGMGFEQCKADSCLYRKRLRSGDWVYMMIYVDD
FT                 ILIVCAQQEEIAKIEESLQSKLKISKLGDVRCFLGIRVTRCADGSFMLDQS
FT                 LFIRKLVKRFGMEGAKGSKYPLDQGYFKIMKESRNLKDNVEYHKLIGSLLY
FT                 LATNTRPDIAASVGILSRKVSCPTELDWLEAKRIVRYLIHTVDYGLKLGRR
FT                 NGTKLTLEGFSDADWAGDTSDRKSCSGYLFRLGGATISWTSRKQSSVTTST
FT                 MEAEYVALSEATQQAIWLRRLLCELNVEQNYATVIHEDNKGCMDFVALDQQ
FT                 KRRSKHIDTRYHYTKERCASGEIELRYCSSEDMIADILTKPLGPLKIRKFA
FT                 LDMGLVPIPNRGG"
XX
SQ   Sequence 4129 BP; 1120 A; 889 C; 1246 G; 873 T; 1 other;
     ggttatgggc ccagcggaaa taacgcgaat cgtttaaagt ttcggtcgta aaagtcggta        60
     aagtatcgga agtttttttc atcgctgtga gcaggagctg ccgggtgtgg anggagaaaa       120
     tggcggatca gcagaggttc ccactcccga agttgtcgaa ccacaattac caatcctgga       180
     aattcaggat ggaaatgctg ctcgtgcgtg aggatttgtg ggacgtcatc agccaggcaa       240
     aacccgaacc ggttaccaac gattggaaca aggcggattt gaaggcccgt gcgacgattg       300
     gcctttgtat cgatgacagc caaacgagcc tagtgaggag ctgcaccagt gcgaaggatg       360
     cgtggcaagc attgaaggac taccacgaca agggatccga ggtttacctt ctcaagaaac       420
     tcacccatct ggagttgaga gaagacggcg acatggaagg gcacctgcag cagttcacgg       480
     aattgttgca gcggattgcg gatgtcggtg atcccatccc ggataagttg caggtagcga       540
     tgctgctttg ttcgttgccg gactctttcg acgcgctagt gactgccctc gaacagcgtc       600
     ccagtgcaga gctaactttg gaactagtta aggccaagtt gcttgccgaa gccgaaaagc       660
     ggcgtgaacg ttccggatcg tcgggtgcag caggaggaaa tgcactgaag gtggagtatc       720
     gttcgaaaaa tcgttcatca cgacacgacg gcggtgccaa aaacaatcaa gagacgcggg       780
     tatgttttct gtgcaagaaa cccggccatc ttaagcggaa ctgccggagc cagcagaagg       840
     catctggaag gaaggcagac gaagcaaatc aagtgaagga cgattcggcg aaagcaaagc       900
     aggttcaaaa cgtctttgat ggacctcttg cttggattgc cgggaaggtg gaacccacca       960
     gctggttcgt ggacagcggg gcgtcgaggc acatgaccgg gagcagaggt ttcttcgatg      1020
     tgctgcagga atccaaaggg atgagcgtga tgctagctga cggtgagaag gccgtagtta      1080
     aaggtatcgg tagcggaagg attaccggtg ttaaggacga tggatcgccg gtggacatta      1140
     ccttgtcgga tgtgctatac gtgccgaagc tagcaagtgg attactttcg gtgagtaccc      1200
     taaccaacaa atgcttcaat gttgtttttg gggaaaacgg atgcgagatc cgtaaaaata      1260
     gtggcgagat agcagttgta gccgatcgct atggcagcct gtacagactt cgagttccgg      1320
     atcaagcgat ggtgagtgta gatggggcac atacactcaa ctgccagcat acgtggcaca      1380
     ggcgtctcgg ccatcgggac gttgaagtga tccgagcggc tcacaaaaac ggtgcggctg      1440
     acggcatgaa actggtagac tgcggtgtgc gtacggtttg ccgatgctgc ctggaagcga      1500
     agatgccacg gactccattt ccaaagacag ctgaccgtgg ttcaaaggag atactcgatg      1560
     tcgtgcatag cgacgtcagt ggcccgttag ctacgacacc tagcggaaat cagtatttcc      1620
     taacgttcat tgacgattat tctcgaatgg ctttcgttta cttgttgcgg aggaagtcgg      1680
     aggtggctga aaaggtaaag gacttcgtgc tgttctgcaa gacacagatt ggaaaaactc      1740
     ctcgagtatt gcaatcggac ggcggtggtg aatacgttgc caaggagttg cagggatttt      1800
     tgcgaagcga aggaatcgtc agccagttca cggcgccata ctcaccgcaa cagaacggag      1860
     tagcggagag acgcaaccgc tacctgaagg aaatgaccat gtgtatgttg ctggaagccg      1920
     gactggatgc aaagtactgg ggcgaggcag tattgactgc aacgtatctc caaaatcgtt      1980
     tgccgtcgcg atcaatcggc atgagtccgt ttgaacggtg gtacggccgg aaaccgtcat      2040
     tcgagcacct gaaaatcttt ggaagcgagg catgggtgca gataccggcg gataagcgca      2100
     agaagatgga agtgaaggct cgcaagatga tgttcgtcgg ttactccaac caacataagg      2160
     cttaccgttt tctggatatt gacagcggtc gaattacgat aagccgagat gtccgttttg      2220
     tggagaatct ggagttcgga ctgccacagg tggcggaaag ggcaccggct gagcccaaga      2280
     aagttgagga caccgattcg atggttgagt tggagccgtt accgaagacg attaggagac      2340
     ctgacagcga cgaagaggaa gacttccatg atactgcaga agcttgtgcc caagatgatg      2400
     gagaagcgga tgctgaacag actgtgggat gtccggtaaa tcaacgaccg gaattgcggc      2460
     gcacaactcg tggagcgctg ccggcgagat tcagcgacta cgtgatgggc atggtagcac      2520
     tggaaacgga tgagccgagc acattgaaag aagcaatcac ttgtgctgaa aagaaagagt      2580
     ggataaaggc tatgagtgag gaatacagtt cgctgatgtc caacgggacc tgggcgctag      2640
     tagatcctcc agcgaagcga aacgtgatcg gaagcaagtg ggtttacaag cgaaagtacg      2700
     acgcagacgg aaatgtcgag aggttcaagg ccaggcttgt cgcgcaaggg tttacccagc      2760
     gcatcggaac cgattacgac gagatttttg ctccggtggc gcagcagtgc actttacgcg      2820
     ttctactgac tgttgcaggc cggcgtaact ggatcgtcaa gcatttggac gtcaaatcag      2880
     cttacttata cgggacgctg accgaggaaa tttttatgcg tcagccaccc ggatttgccg      2940
     tgaaagggaa ggagcatcaa gtctgcaggt tgcgtaaaag catttacggc ctgaagcagg      3000
     ccgccagggt atggcacagg acaatatcgg atatcctgac tggcatggga ttcgagcagt      3060
     gcaaggccga cagctgtctg taccggaagc gactccgcag tggcgattgg gtgtacatga      3120
     tgatctacgt ggacgatatt ttgatcgtgt gtgcacaaca agaggagatt gcgaaaattg      3180
     aagaatcgtt gcagagtaag ctaaaaatct ctaagcttgg tgacgttaga tgtttcctgg      3240
     gaatccgtgt cacacggtgc gctgatggct cgttcatgtt ggatcaaagt ctcttcatac      3300
     ggaaactggt aaagcggttt ggaatggaag gtgccaaggg ttcaaagtat ccattggacc      3360
     aagggtactt caagataatg aaggagagcc gaaacttgaa ggacaacgta gaataccaca      3420
     agttaatcgg gtcacttcta tatttggcta cgaacactcg gccagatatt gcggctagcg      3480
     taggaatcct gagccgcaaa gtgagctgcc cgacggaact ggactggctg gaagctaaaa      3540
     ggattgtgcg atacctaatt cacacggtgg actacggtct gaaacttggc agaaggaacg      3600
     ggacaaagtt gacgttggaa ggcttcagtg atgctgactg ggctggagat accagcgacc      3660
     ggaagtcttg cagcggttat ctatttcgcc taggaggagc aacaatcagc tggacaagtc      3720
     gaaaacagag cagtgttacc acatcgacca tggaggccga gtatgtagca ctatccgagg      3780
     ctacacagca agcaatatgg ctccgtcgac tgttgtgtga actcaacgtg gagcagaatt      3840
     atgcaactgt aattcacgaa gacaacaaag ggtgtatgga cttcgtagca ctcgatcaac      3900
     agaaacgcag atccaaacac atcgataccc gttatcacta caccaaggag cgatgtgcat      3960
     caggggagat cgagctacgt tactgttcgt cagaagatat gatcgcggac atcctgacta      4020
     aaccgctagg accattgaag atcaggaagt ttgcattgga catgggtttg gtaccaatac      4080
     cgaaccgtgg aggctgagaa ggaggattgg gctacttcac gaagaggag                  4129
//
ID   Copia-70_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-70_AA_;
KW   Copia-70_AA-I; Copia-70_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2615-2615 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 226 BP; 59 A; 45 C; 48 G; 74 T; 0 other;
     tgttggtgtt tagcaccgat agcgtgaata cgccccgatg gaaagttgat ccagagaata        60
     aaaactgaat attgtttttt ctttccgtgt ataagatact gtcagtaaga gaaaataaac       120
     gagcacttag ttagtaaaag tagtccgcgg tattttatct ttcgttcgcg ttaaattcac       180
     gtttcctggg attttattcc ggtgtccgcc cgtctttccg cccaca                      226
//
ID   Copia-71_AA-I repbase;    DNA;    INV; 4235 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-71_AA_;
KW   Copia-71_AA-LTR; Copia-71_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4235
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2616-2616 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1437-1967] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..4235
FT                 /product="Copia-71_AA-I_1p"
FT                 /translation="MSFANGQGDPQAVPQAPQPNLQAPYQVQNLNSLPSIE
FT                 RLTGRDNWPTWKFAVETFLELEDLWEAVKPVPGADGTMPAIDERKCRKARA
FT                 KIILLLDPVNYVHVKDAKTARDAWKKLEAAFEDTGLTRRVALLRKLITTNL
FT                 ATCGSVDIYVNQIVSTAHQLRGVGFDISEEWVGTLLLAGLPEEYKPMIMAL
FT                 ENSGLAITGDSIKTKLLQEVEASAGKTAFIGRKPFPPRQKKGVTEDRSADP
FT                 PKGPKCKRCSKYGHIARDCRSKKGSAFCTVLATDAGVTDDCWIFDSGASDH
FT                 FTKNRSLLMDDRAASGVVMAADKGAMNIVATGAVNLKPKCCPEGPITVNNV
FT                 KLIPTMSHNLLSVSQIVRRGHEVKFTDRGVTVTDPEGAIIATGRHDVKNGL
FT                 FVFQEHEDRRALSLASSPANLDVWHRRMGHLNVHSLHKLKNGLASGVQFKE
FT                 SAMSNCVECAKGKQFRLPFPKKGRRATEILELVHTDLCGPMEEASLGGSRY
FT                 YVSFTDDKTRRIFIYFLEQKSETELMNAFNQFHSLAERQTGRKLKTIRSDN
FT                 GKEFINKSLQRRLRELGIQHQMSTEYTPQQNGLAERVNRTVVERARCMLHE
FT                 AKLPKSFWAEAVAAATYLINRSPTKGHHLTPEEAWSGRKPDLSHVRIFGTK
FT                 TMAHIPKQKRKKWDAKSMEAILVGYEEHTKAYRLYDPVKKNVFRSRDVVFI
FT                 SEANSEKQPDDQQQVTRREQQRTKTYVSLEYDPEPEVATVQEQPFMEEEDE
FT                 DPVDEVADEDQVFSEAEDESDSEVEYFSQVETSGGEDQDSTDDIGDVTISA
FT                 LPPQQSSNPPVSREVLRRSGRERAIPGKYKDYIFPNNRFPFQHPTDPAVLT
FT                 SEDQSGPSDVQQGLKASRCLPKRSDDPRTLAEAMRGPDAIQWQAAMKEELQ
FT                 ALRDNGTWELVQLPPNKKAVGCKWLFKTKVDEKGAVVRHKARIVAQGFTQK
FT                 YGSDYDEVFAPVAKQVTFRTLLTVASRRKAIVKHVDVKTAYLNGELEETIY
FT                 MRQPEGYTTGDDRTVCLLKRSLYGLKQSARVWNRKVDSVFKAMGFQQSKMD
FT                 PCLYIRRKNGKTAYILIYVDDMVIVTQTEEEFKSIFDSLQANFTVSNLGDI
FT                 RHFLGIEVEKSAAGYKLNQTAYIRKLVGRFKMETAKPSKTPLDPGYFQHKE
FT                 EMDQLPNNKDYLSLIGGLLYVAVQTRPDIAVSTSILAQKSSCPNQQDWNEA
FT                 KRVLRYLSTTSNHKLHLGSSGDGLQMFVDADWAGNYRDRKSNSGHLLLLGG
FT                 GVIAWGSRKQTCVALSSTEAEFVALAEGCQELCWTRRLLEEIGEAAQGPTV
FT                 VFEDNQSCIKLVESDKIERRSKHIETKYFFVRDLQEKGIINLRYCPTESML
FT                 ADVLTKPLQRVRLEKLRWEIGLRPDQSEEE"
XX
SQ   Sequence 4235 BP; 1136 A; 1070 C; 1207 G; 822 T; 0 other;
     tctaaaaggt tatgggccca gcaaaagaag tttaaagttt ttcaagaaaa ctcaagatgt        60
     ccttcgcaaa cggacaaggc gatcctcaag cagttcctca agcaccgcag ccgaatcttc       120
     aagccccgta tcaagtccaa aacctgaaca gtcttccgtc catcgagcgg ctaaccggcc       180
     gggacaattg gccgacgtgg aagtttgccg tggagacctt cctggaattg gaggatttat       240
     gggaagctgt gaagccggtc ccaggtgcag acggaacgat gccagcaatc gacgagcgaa       300
     agtgtcgcaa ggcacgagca aaaattattt tgctgttgga tcccgttaac tacgtccatg       360
     tcaaggacgc aaaaacggct cgtgacgcgt ggaagaaact ggaggcggcg ttcgaggaca       420
     ccggactgac ccggcgggtc gctcttctac gtaagctcat cacgaccaat cttgcgacct       480
     gcggcagtgt ggacatctac gtcaaccaaa tcgtttccac cgcccatcag ttacgcggcg       540
     taggattcga tatctccgaa gagtgggtcg gcacgctgct cctcgctgga cttccagagg       600
     agtacaagcc gatgatcatg gcgctggaga actctggtct ggcgatcacc ggggatagca       660
     tcaagaccaa gctacttcaa gaggtcgagg catcggcggg caagaccgca ttcatcggaa       720
     ggaaaccgtt ccccccaagg cagaagaaag gcgtaaccga ggacaggtca gctgatccgc       780
     cgaagggacc gaagtgcaag agatgcagta agtacggaca catagccagg gactgtcgtt       840
     cgaagaaagg atccgctttc tgtactgtgc tcgctacgga tgctggtgtg accgatgact       900
     gctggatttt cgattcaggc gcttcagacc attttacgaa aaatcgaagc ctactgatgg       960
     atgaccgagc ggcgagtggt gttgtcatgg cggccgacaa aggtgcgatg aacatcgtag      1020
     ctaccggtgc ggtgaatttg aagccaaaat gctgtcctga aggcccgatc acagtgaata      1080
     acgtgaagct tatccctacg atgtcacata acctgctgtc ggtaagtcag atcgtccggc      1140
     gtggtcatga agtgaagttc accgatcgcg gagtgacggt aacggacccg gaaggagcaa      1200
     tcattgcaac cggcaggcac gacgtgaaga acggattgtt cgtgttccaa gagcacgaag      1260
     atcgcagagc gctatccctt gcatcctcgc cagcaaactt ggatgtctgg cacagacgga      1320
     tgggccacct caacgtgcac agtctgcaca aactgaagaa cggcctggcc tccggagtgc      1380
     agttcaagga atcggcgatg tccaactgtg tcgagtgcgc taaaggtaag cagtttcgtc      1440
     ttccgtttcc caagaaagga cgacgagcaa ccgagatcct ggaactggtc cacacagacc      1500
     tatgtggacc catggaggaa gcatcactag gcggaagcag gtactatgtg tcgttcacgg      1560
     acgataagac gcggaggatt ttcatctact tcctggagca gaaatccgaa accgagttga      1620
     tgaatgcatt caaccagttc cacagcctcg cggagaggca gacggggcgc aagctgaaga      1680
     ccattcgcag tgataacggt aaggagttca ttaacaaatc gttacagaga cgcctgaggg      1740
     agcttggaat ccagcatcaa atgtcgacgg aatacacgcc gcagcagaat gggctggctg      1800
     aacgagtcaa tcggaccgtg gtcgaacgag cccgttgtat gctgcacgaa gcaaagctgc      1860
     cgaagtcatt ctgggcggaa gcggtagctg ctgcgacgta cctcatcaat cgatccccta      1920
     ccaaaggaca ccatctgacc ccggaagaag cttggagtgg ccgcaagccc gatttgtcgc      1980
     acgtacggat ttttggtacg aagacaatgg cccatattcc gaaacaaaaa cggaagaagt      2040
     gggacgccaa gtcaatggaa gccatcctcg tcggttacga agagcacacc aaagcttacc      2100
     gactgtacga ccccgtcaag aaaaacgtgt tccgaagccg tgacgtcgtc ttcatatccg      2160
     aagcgaattc cgagaagcaa cctgatgacc agcagcaagt cacccggcgc gagcagcaac      2220
     gaacgaagac gtacgtcagc ctggagtatg atcctgaacc tgaagtcgct actgtgcaag      2280
     agcagccgtt catggaagaa gaagatgaag atcctgttga cgaagtggct gatgaagatc      2340
     aagtcttttc tgaagcagaa gacgagtcgg actccgaggt ggaatatttc tcgcaagttg      2400
     aaaccagcgg tggcgaagat caagattcca ctgacgacat aggcgacgtg acgatttcgg      2460
     cgctccctcc gcaacaatct tcaaatccac ccgtgtcacg cgaggtgttg aggcgcagtg      2520
     gcagggagcg cgcgatacca ggcaagtaca aagattatat ctttccgaac aatcgctttc      2580
     cgttccaaca tccaacagat ccagccgttc tcacatctga ggaccaatcc ggtcccagtg      2640
     acgttcagca aggactgaag gcgagcaggt gtttgccgaa acgatctgat gacccccgaa      2700
     ctctggcgga agcgatgcga ggtcccgacg cgatccagtg gcaagccgcc atgaaggagg      2760
     agctacaagc gttgagggac aacgggacgt gggagttggt tcagctacca ccaaacaaga      2820
     aagccgttgg atgtaaatgg ctgttcaaaa ccaaggtcga cgagaagggt gccgtggtgc      2880
     ggcacaaggc tagaatcgta gcgcagggct tcacccagaa gtacggcagc gactacgatg      2940
     aagttttcgc accggttgca aaacaggtga cgttccggac actgctgacc gttgccagcc      3000
     ggaggaaagc catcgtcaag cacgtcgacg tgaaaacggc gtacctgaat ggtgaactgg      3060
     aagaaaccat ttacatgcgc cagccggagg gatacactac cggcgatgac cgtactgtgt      3120
     gtcttttgaa gaggagcctg tacggattga agcagtcggc gcgcgtctgg aatcggaagg      3180
     tggattccgt ctttaaggcc atgggattcc aacaatccaa gatggacccg tgcctgtaca      3240
     tccggcggaa gaacggcaag acggcgtaca tcctcatata cgtcgacgat atggttattg      3300
     ttactcaaac cgaggaggag ttcaagtcca ttttcgattc tctacaagcg aacttcaccg      3360
     tgtcgaacct cggtgacatc cgtcacttcc tgggaattga ggtggagaag agcgcagccg      3420
     gttacaaact gaaccaaaca gcgtacatcc ggaagctcgt tggaaggttc aagatggaga      3480
     ccgcgaagcc atcgaagacc cctctcgacc caggctactt ccagcacaag gaggagatgg      3540
     atcagctgcc gaacaacaag gactatttga gtctgatcgg tggtctgctg tacgtagcgg      3600
     ttcaaaccag accggatatc gcagtcagca cgtccatcct agcgcagaag tcaagctgtc      3660
     caaatcagca agattggaac gaggcgaaac gggtcctgcg ctacttatcg acgacaagca      3720
     accacaagct gcatcttggc tcatctggtg acgggctgca aatgttcgtt gacgccgatt      3780
     gggccggcaa ctaccgcgac cggaaatcca attctggtca cctgctgcta cttggaggag      3840
     gagtcatcgc gtggggttcc cgaaagcaaa cttgtgttgc actgagctcc accgaggcgg      3900
     aattcgttgc ccttgctgaa gggtgccagg agctgtgctg gaccagaaga ctactcgagg      3960
     agattggaga agcagctcaa ggtccaaccg tcgtatttga ggacaaccag agctgcatca      4020
     agctagttga gagcgacaag atcgagcgac gcagcaagca catcgagacg aagtattttt      4080
     tcgtacgaga cctgcaggag aaaggtatta ttaatttgcg ttactgtccg acggaatcga      4140
     tgctcgcaga tgtgctgaca aaacctcttc aaagagttcg tttggagaag ctgcgttggg      4200
     agataggttt gcgtccggat cagtccgagg aggag                                 4235
//
ID   Copia-71_AA-LTR repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-71_AA_;
KW   Copia-71_AA-I; Copia-71_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-131
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2617-2617 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 131 BP; 40 A; 27 C; 24 G; 40 T; 0 other;
     tgtcggaaca agtaggcgca atgcgtccag tccgaaccaa actatttata gtaggctatg        60
     cttttgttat tagaataaaa ttttcacttc cctaacaacc gtcaaacagt gtagtttgat       120
     ttacggctac a                                                            131
//
ID   Copia-72_AA-I repbase;    DNA;    INV; 4097 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-72_AA_;
KW   Copia-72_AA-LTR; Copia-72_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4097
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2618-2618 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1472-1999] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..4084
FT                 /product="Copia-72_AA-I_1p"
FT                 /translation="MADVKVSFEKLNDNNFAVWKFKMELFLVKEELFAVVV
FT                 EDKPDEPSADWILKDGKARAMIGLAVEDTQLVHIIRKTTAKEMWDSLKKIH
FT                 EESSLSSTLHVLRKLCSMRLAEEDNLLEHLNGMTALHNKLEVMGEGLKDRV
FT                 FMALILSSLPMSYGSLINVIESRPEAEVTVDFVKSKLREEWRRRQACGGGV
FT                 ESSEKALKTMSGKSKFEKKKSVVCHHCHQSGHFRRDCPKLKEKSDKVKKDA
FT                 GKVNMAAEVSSGVMEMCLVAASPCAPGKWYLDSGATSHMTSDVKLLSDLDR
FT                 SKSVEICLADGTRIKSGGSGTGKVASLTGSGIQMNVTLNDVYHVPSLAGNL
FT                 LSVGKICDLGYSVVFEKSGCRVLRDKEVMLVGERSGGLYRLKQFPEQALAT
FT                 TENHPESCEHLWHRRLGHRDPEAIAKIVRHDLGFGLKLQKCNVNCVCGVCL
FT                 KGKMSRISFPKRSESNSSAVGDLVHSDVGGPMEVATPSGNRFYVTLVDDFS
FT                 GYTVVYLLKAKSEVEQKVREYCSLVKNHFGRYPRIIRTDGGGEYSSTAFKR
FT                 FLAESGIVLQQTAPYSPQQNGKAERKNRYEVEMVRCLLLESGLSKKYWGEA
FT                 LNTANYLQNRLPSSGKEKTPYELWHGKKPSYVHIRIFGSEAYVHVPKEKRR
FT                 KLDSKAVKLVFVGYAEGRKAYRFLNPENDTILISRDAKFVEVREEEVPSGR
FT                 QEEFPGEENEASVIPEKKKEEVVISLGKKIEEIDPVPEAEEGSDEEEDEDL
FT                 EELDMSDYSVSSSASSFHGFPMEEIARRSRRSTKGVPPRRLIEEIFVAGTL
FT                 PPEEEMEPRTLQEALSCEKSAEWRKAMVEELRSHEENGTWELVDPPAGRKP
FT                 VGCKWVYKIKRNAAGEAVKYKARLVAQGFNQKYGQDYDEVFAPVVKQTTLR
FT                 TLLAIASKRNLVLKHFDVKTAYLYGKLEEELYMRQPSGFVIEGKEQQVCKL
FT                 VKSIYGLKQSARCWNHRLHAFLQSLKFKQSRADPCFYTKVVNGKRLYLLVY
FT                 VDDILLGCESEEEIEKIYAALSKEFEMANLGDANYFLGMEIRKEGGKYGIS
FT                 LENYIDRVAGRFGLIDAKCAKTPMEDGFVKTREESPPLKSNGQYRSLVGAL
FT                 LYIAVCARPDIAASVSILGRCVCAPTEADWVAAKRVVRYLKGTKDWQLRYG
FT                 DSEGKLVGYSDADWAGDLKSRKSTSGIVFMYAGGAISWTSRLQDFVTLSSM
FT                 ESEYVALSEASQEAVWLLHLFEDFGEPTFKPVTLWEDNQSCIKFVSSERTT
FT                 KRSRHIETRQCFVKELCEARVLELLYCSTEEMVADILTKALGQVKLRKFAS
FT                 MLGLAGGDR"
XX
SQ   Sequence 4097 BP; 1091 A; 775 C; 1282 G; 949 T; 0 other;
     ataggttatg gtcccggcag tatactgaga actgtagaac ggtatttccg gtaaagttgt        60
     gcttcaattt cgaagatatt tttcggttcg gtcgaggcgt cgcgtgtgtg tgtgaaacaa       120
     catggcggac gtgaaggtat cgttcgaaaa gttgaatgac aataatttcg cggtgtggaa       180
     gttcaagatg gaacttttcc tggtgaaaga agagctattc gcggttgtgg tggaagacaa       240
     gcccgacgag ccgtcggccg actggatcct gaaggatgga aaagctcgtg ccatgatcgg       300
     tttggctgtg gaagacacgc aactggtcca catcatcagg aagacgactg cgaaggagat       360
     gtgggactca ttgaagaaaa ttcatgagga gtcgtctctt tcttcgactt tgcacgtgtt       420
     gcggaagttg tgctcgatgc ggttagcaga agaagacaac ctgctggagc atctgaatgg       480
     catgacggca ttgcacaaca agctggaagt gatgggagag ggattaaagg acagagtgtt       540
     catggcgtta attctttcga gcctcccgat gtcgtatggt agcctcatca atgtgattga       600
     gagccgaccg gaggcggaag tgactgtgga ctttgtgaaa agcaaattgc gcgaagagtg       660
     gcgtcgtcga caagcgtgtg ggggtggtgt ggagagcagt gaaaaggctc tgaagacgat       720
     gagtggcaaa agcaaattcg aaaagaagaa aagtgttgtg tgccatcatt gccaccaatc       780
     cggacacttc cggcgagact gtccgaaatt gaaagaaaaa tcggacaaag tgaagaaaga       840
     tgctgggaaa gtgaacatgg ccgcggaagt ttcgagcggt gtgatggaaa tgtgtctggt       900
     agcagcgagt ccgtgtgccc ccggaaagtg gtatttggat tccggagcga cgtcgcatat       960
     gacgagtgac gtgaagctgc tgagtgatct ggatcgcagt aaaagcgtgg aaatatgctt      1020
     ggccgatggt acccgcatca agtccggtgg ttccggaacc ggaaaagtgg catcgttaac      1080
     gggaagtgga atccagatga acgttacgct caacgatgtg taccacgtgc cgtccctcgc      1140
     tggtaatctg ctgtccgtag gtaagatttg tgatcttgga tacagcgttg tattcgagaa      1200
     atccggctgt cgagtcctac gtgacaagga agtgatgctg gtaggcgagc gaagcggggg      1260
     gttatatcgt ttgaagcagt tccctgagca agcactggca acgactgaga accatccaga      1320
     atcgtgtgag catctgtggc atcgtcggct gggtcatcgc gatccggaag caatagcgaa      1380
     aatagtgcga cacgatttgg gtttcggtct gaaattacag aaatgtaatg taaattgcgt      1440
     gtgtggagtt tgtttgaaag ggaagatgag tcggatttcg tttccgaagc gatccgaaag      1500
     taattcgtca gcggttggcg atttagtgca ttcggacgtt ggtggaccga tggaagttgc      1560
     cacacccagc ggcaatcggt tctatgtgac tctagtggac gatttcagtg gttacacggt      1620
     ggtatacctg ctgaaggcga agtcggaagt tgaacaaaaa gtgcgcgagt attgtagttt      1680
     ggtgaagaac catttcggcc ggtatcctcg aatcattcgt acggatggag gaggagaata      1740
     ttcgagcacg gcgttcaagc gtttcttggc tgaaagtggt atcgtcttgc aacaaacggc      1800
     accgtattct ccgcaacaaa acggtaaagc ggagaggaag aatcggtacg aagttgaaat      1860
     ggttcggtgt ttgcttcttg agtccggttt gagcaaaaag tattggggtg aagcgttgaa      1920
     cacggcgaac tatttgcaaa atcgtcttcc gtcgtcgggt aaggaaaaga caccgtatga      1980
     actgtggcac ggtaagaaac cgtcgtatgt ccatattcgt attttcggtt cggaggcgta      2040
     cgttcatgtg ccgaaggaga aacggagaaa attagattcg aaggcagtga agttggtctt      2100
     cgtcgggtac gcggaaggaa ggaaagcata tcgtttcctg aaccctgaga acgatacgat      2160
     tttgataagc cgcgatgcga agttcgttga agtgcgtgaa gaagaggtgc ccagcgggcg      2220
     tcaggaggag tttcctgggg aagaaaacga agcatcagtg attcctgaaa agaagaaaga      2280
     agaagtcgtt atatcgttgg ggaagaagat tgaagaaatc gatccagtac ctgaagcaga      2340
     agaaggtagc gatgaagaag aagatgaaga cctggaagag ttggacatgt cggactattc      2400
     agtgtcatca agtgcaagtt cgttccatgg ttttccgatg gaagaaatcg caagaaggtc      2460
     tcgaaggtca acaaaaggtg tacctccacg gcggctcatt gaggaaattt tcgtggcagg      2520
     cactcttccc ccagaggagg agatggagcc gagaacgcta caggaggctt tgagctgtga      2580
     aaagagtgct gagtggagaa aagcaatggt tgaagagctg cgatctcacg aggagaacgg      2640
     aacgtgggag ctggtagacc cgcctgctgg gcgaaaacca gtaggctgca agtgggtgta      2700
     caaaatcaag cgaaacgctg ctggggaagc tgtgaagtac aaggcacgtc tggtcgccca      2760
     aggattcaat cagaagtatg ggcaagacta tgatgaagtg ttcgcgccgg ttgtaaagca      2820
     aacaactttg cgtacacttc tggccatcgc ttcgaaacgg aacctggtgc tgaagcattt      2880
     cgatgtgaag accgcatatt tgtacggaaa gctggaagag gagctctata tgcggcaacc      2940
     aagtggcttc gtgattgaag gcaaggagca gcaggtgtgt aagctggtga aaagcattta      3000
     cgggttgaaa caatctgctc gttgttggaa tcatcgtctt cacgccttcc tccaaagttt      3060
     gaagttcaaa cagagccgag ctgatccgtg tttttacacg aaagtggtca acggaaagcg      3120
     attgtatttg cttgtctacg tcgacgatat tttgctgggc tgcgaaagcg aggaggagat      3180
     cgaaaagatc tatgctgccc tgagcaagga gttcgagatg gccaacctgg gagatgccaa      3240
     ctatttcctg ggaatggaaa tccggaaaga aggtggtaag tacggtattt cgctggagaa      3300
     ctacatagac cgcgttgctg ggagatttgg tttgatcgat gccaagtgcg cgaaaacccc      3360
     gatggaagat ggattcgtca agaccaggga ggagagtcca ccactgaaat cgaatggcca      3420
     gtacaggagt ctagtgggag cgttgctgta tatcgccgtc tgtgcgagac ccgatattgc      3480
     tgctagtgtg tcgattttgg gacgatgcgt atgtgcaccg actgaagccg attgggtggc      3540
     agccaaacgt gtggtgcgct acctgaaagg gacgaaagat tggcagttaa gatacggaga      3600
     ctcagaaggt aagcttgttg gatactcgga cgcggactgg gcgggcgatt tgaagtctcg      3660
     caagtctaca agtggtatcg tgttcatgta tgccggagga gcgatttcgt ggacaagccg      3720
     tctgcaagat ttcgtcacac tctcgtcgat ggaatcggaa tacgtggcgt tgagcgaggc      3780
     gagccaagag gctgtttggc ttctgcattt gtttgaggat ttcggtgagc caacgttcaa      3840
     gccggtgaca ctctgggaag ataaccagag ctgcatcaag ttcgtcagtt cggaacggac      3900
     aacgaagcga tcgaggcaca tcgagactcg tcagtgcttc gtgaaggagc tgtgtgaagc      3960
     aagagttttg gagctgcttt actgttccac agaggagatg gttgcggata tactcaccaa      4020
     ggcacttggg caggtgaagc ttcggaagtt cgctagtatg ctcggtttgg ccggcggtga      4080
     tcgttgagga ggagtat                                                     4097
//
ID   Copia-72_AA-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-72_AA_;
KW   Copia-72_AA-I; Copia-72_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-283
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2619-2619 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 283 BP; 77 A; 64 C; 58 G; 83 T; 1 other;
     tggaaggagc aacgatcgag atgctcttac cgacaaggct gtgctgtcaa ctgtgacgca        60
     catcaggcaa cacgcgaaag catcacctac tgtgatggcg aaaagcttgt taagcgcatc       120
     cagcgcgcca ttcatcccca ctctcattca taagtgaaag cgccattgaa gtgtgaacat       180
     cgtttatgaa ttcattctcg tgtttatttc cgnttaataa agttaatttg tgtttctaca       240
     gtattctcgt gtactagttt ccgttattga aagacaattt cca                         283
//
ID   Copia-73_AA-I repbase;    DNA;    INV; 3943 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-73_AA_;
KW   Copia-73_AA-LTR; Copia-73_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3943
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2620-2620 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1418-1747] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..1747
FT                 /product="Copia-73_AA-I_2p"
FT                 /translation="MGDLKTSFEKLGDTNYAVWKFRMELLLIQDDLLSVVT
FT                 EEKPEDPPAAWTTKDAKARSLIGLNVKDSQLSHIIRAKTSKQMWDALRTYH
FT                 ERSSLASKVHVLRKLCSQRLLEGGSMSDHLNEITCLANRLIAMGEELKDHW
FT                 IVAMVLSSLPESYGSLITALESRPEADLTLEFVKGKLLDEWRRREENQSIE
FT                 KVLRTGGDESRKSSMKQKITCHYCGLEGHFRRDCRKFASDKKKQQKPREQK
FT                 VKLAANDEMEMCLAAGEQSGGDLWLLDSGATSHMTNDVRFLNSLDVSRKTG
FT                 ISLADGKKVEGCGVGTGVFRGMNDQGTAVKVKLSEVYHVPALAGSLLSVSK
FT                 ITDEGYEVVFNKTMCKVVKDDVIYLIGERRGSLYHLKAGPERVLVTVADHS
FT                 QQCIHLWHRRLGHRNSDAIMRIVREEMGTGMAVQRCGVQSICGTCCEGKQS
FT                 RASFPKESESRTVAVGDLIHMDLCGPFEERTPSGNRFCLVIIDDYSRYTEV
FT                 YLMRCKSEAILKIQQYVNLMANQFGRKPRIMRSDGGGEFINGIRLQQFCQL
FT                 PTAHSRME"
FT   CDS           1780..3933
FT                 /product="Copia-73_AA-I_1p"
FT                 /translation="MMRCMLAESKLEKKFWGEAIATANYIQNRLPTSSSSK
FT                 TPYELYHGKKPSYTHFRIFGSTAYVHIPKQKRRKLDKKAEKLTFVGYAEGC
FT                 KAYRFLNRVDCSITISRDAKFDETFNEEPEVIEHVDDDVVVILKNDNPIPD
FT                 IVEVEPEQTKPIVNDDEAEHPEELQDDEPEGEPNCDATTPRRSSRPNKGVP
FT                 PKWYERIFAATECQEEPTNFAAAMSSDHKEEWKLAMEEEIESIEDNKTWKL
FT                 VDLPAGRKAIGAKWVYKIKRDANGEISRFKARLVAKGYSQQYGVDYDEIFA
FT                 PVVRQATFRTLLAVAAKKGMSVRQYDIKTAFLHGTLEEEIYMQQPPGFVVK
FT                 GSEQKVYRLYKSLYGLKQAAKAWNQRLNAELERQGFRRCESDPCLYVKLEN
FT                 GKHSYVLVYVDDILVASEDNNLFTKTEKALRRSFTLTSLGEVHWYLGMEVK
FT                 RNEKGDFFLSQERYIEQVAKSTGLAETKPSRIPLDPGYHKHEASERLPDNK
FT                 DYQKLMGQLLYVSVNTRPDISAAVSILSRKTSCPTKGDWVELKRVARYLMT
FT                 TKNLCLRLSNTEANEGLLGFCDADWAECRDDRKSNSGFLMKYNGGTISWAC
FT                 RKQTCVSLSTAEAEFVALSESVQEMMWLKRLLCDLDEQPAVPTIYEDNQSA
FT                 LKMLDSEKFSNRTKHIDTRFHFARDMKTKREVDFVYCCSEDMVADLLTKPL
FT                 GAVRLGKLRTMSGIEIMC"
XX
SQ   Sequence 3943 BP; 1225 A; 758 C; 1054 G; 906 T; 0 other;
     ataggttatt ggcccggaaa aactctgaag aaatagtctt ggtcgaagtt cggaaaatcg        60
     ttaccggagg agttccaaca agatgggtga tctgaagacg tccttcgaga aacttggtga       120
     taccaactac gcggtgtgga aatttcgtat ggagcttctg ttgattcaag atgacctgct       180
     gagcgtcgtt actgaagaga agcctgaaga tccaccggca gcttggacca cgaaagatgc       240
     caaggcacga tcgctgattg gactcaacgt taaagacagt caactttcac atataattcg       300
     agcgaaaacg agtaagcaga tgtgggacgc gttacgaaca taccacgaac ggtcatcttt       360
     ggcgagcaag gtccatgttc ttcggaagct gtgttcccag agattgttgg aaggaggaag       420
     catgtccgat catttgaacg agataacttg cctagctaac cgactaatcg cgatgggaga       480
     agagctgaaa gatcactgga tagtggccat ggttttatca agcttaccgg aatcgtacgg       540
     aagtcttatt acggcgttgg agagtcgacc tgaagcggat ttaacactcg aatttgtgaa       600
     aggaaaacta cttgatgaat ggaggcggcg cgaagaaaat caatccattg aaaaggtgtt       660
     acgaactggc ggtgatgaat caagaaaatc atcgatgaag cagaagataa cgtgccatta       720
     ctgtggattg gaaggtcatt ttcgtcggga ttgcaggaag tttgcgagtg acaagaaaaa       780
     gcagcagaaa cccagagagc aaaaggtgaa gctggcagct aacgatgaaa tggagatgtg       840
     cctggcggcc ggtgagcaat ctggtggcga tctgtggcta ttggactctg gagcaacttc       900
     ccatatgacg aacgatgtgc gtttcctgaa cagtttggat gtctcacgaa aaaccggaat       960
     tagtttggcg gatggaaaga aagtcgaagg atgcggtgtt ggtaccggcg tgttccgagg      1020
     tatgaatgat caaggtacag cagtcaaggt caaactttcc gaagtctacc atgtacccgc      1080
     gctggccgga agtctgctga gtgttagcaa gataacggat gaaggttatg aagttgtatt      1140
     caacaaaacg atgtgcaagg ttgtgaagga tgacgtaatc tatttgattg gagaacgacg      1200
     aggcagtttg taccacctga aggcaggacc agagagagtt ttggtgactg tggctgacca      1260
     ttcccagcag tgtattcatt tgtggcatcg ccggttggga caccggaact ctgatgcgat      1320
     tatgcgaata gtgcgtgaag aaatgggaac tggtatggcg gtgcagagat gcggagttca      1380
     atccatctgt ggtacgtgct gcgaggggaa acagagccga gcctcatttc caaaggagtc      1440
     agagagcaga acagtggcag ttggtgatct tattcatatg gacctgtgcg gaccgtttga      1500
     ggagcgtaca ccaagtggaa atcgattttg cctggtgatc atcgacgact attctcgcta      1560
     taccgaagtt tacctgatgc gatgcaaatc ggaagcaatc ctcaagatcc aacagtacgt      1620
     taacttgatg gcaaaccaat tcggaagaaa acccagaata atgcgatcgg atggcggagg      1680
     agaatttatc aacggaatcc gattgcaaca gttctgtcag ctccctacag cccacagcag      1740
     aatggagtag cggaaagaaa aaatcgttat ctggttgaaa tgatgagatg catgctagca      1800
     gaatcgaagc ttgagaagaa attttgggga gaggccatag caacggcaaa ctatattcaa      1860
     aaccgtttgc cgacatcatc gtcaagcaaa actccttacg agctttacca tggaaagaag      1920
     ccgtcgtata cccacttccg gatcttcgga tcaacagctt acgtgcacat tccaaagcag      1980
     aaacgcagga agctcgacaa gaaggcagaa aagttgacat ttgttggtta cgccgaagga      2040
     tgtaaagcat accgcttcct gaatcgagtg gattgttcaa taactatcag tagagatgca      2100
     aaattcgatg aaaccttcaa tgaggaacct gaagtgatag agcatgtcga tgatgacgta      2160
     gtagtgattt tgaagaatga taatcctata cctgacattg tagaagtaga acctgagcaa      2220
     actaagccaa tcgttaatga tgatgaagcc gagcatcctg aggagcttca agatgatgaa      2280
     cctgagggtg aacccaactg tgatgctacc acgcccagac gatcatcgag gccgaataaa      2340
     ggtgttcccc cgaaatggta cgagcggata tttgcagcta cagaatgtca ggaggagcca      2400
     acgaattttg ctgcagcaat gtcaagtgac cataaggagg aatggaagct ggccatggag      2460
     gaagaaattg aatccatcga agataacaaa acgtggaagt tagttgattt gccagctgga      2520
     agaaaagcaa ttggtgccaa atgggtctac aaaataaaac gagatgctaa cggagaaatt      2580
     tcaagattca aggcaagact ggtagccaaa ggatacagtc aacaatacgg cgttgattac      2640
     gacgaaatat ttgctcctgt agtacgtcaa gcaacattta gaacactact agctgttgct      2700
     gctaagaaag gtatgtctgt acgccaatac gatatcaaga ctgcgttttt acacggcact      2760
     cttgaggagg agatttatat gcagcaacct cctggatttg tggtcaaagg aagtgaacaa      2820
     aaagtgtatc gactgtacaa aagcctctat ggattaaagc aagcagccaa agcatggaac      2880
     cagcggctca atgcggaact ggaacggcaa ggatttagac gctgtgaatc tgatccgtgt      2940
     ttgtatgtga agctggaaaa tggaaagcac agctacgttc tggtctatgt cgacgacatt      3000
     ttggttgcaa gcgaggacaa caatctgttc acaaagactg agaaagcatt acgaagaagt      3060
     tttacgctaa cctcgttagg agaagtccac tggtatctag gaatggaagt taagcgaaat      3120
     gaaaagggag atttctttct gagtcaagaa cgatatattg agcaagtcgc gaagtcaact      3180
     ggtctggcag aaactaaacc atcaagaata cctttggatc caggatacca caagcacgaa      3240
     gcgagtgagc gtctccctga taacaaggac tatcaaaagc tgatgggtca attgctgtac      3300
     gtatccgtga ataccagacc agatatttct gctgcagtat ccattttaag cagaaagaca      3360
     agttgtccaa cgaaaggtga ttgggttgag ctgaaacgag tagcccgata cctcatgacg      3420
     accaagaact tatgcctgcg gctaagtaac acggaagcga acgaaggact tctgggattc      3480
     tgcgatgctg attgggctga gtgtcgagat gatagaaaat ccaacagcgg attcctgatg      3540
     aagtacaacg gagggacgat tagctgggca tgtcgtaagc aaacgtgcgt atcgctgtca      3600
     acggctgaag cagagtttgt agcactatct gaatcagttc aagagatgat gtggttgaag      3660
     cgattactct gtgatcttga tgaacaaccc gccgtaccca ccatttacga agataaccaa      3720
     agcgccctta agatgctgga cagtgagaaa ttcagcaacc ggactaaaca tattgataca      3780
     agatttcatt ttgcacgaga tatgaagacg aagcgagaag ttgattttgt ctactgctgt      3840
     tccgaagata tggtcgcaga tttactcacg aagcctctag gagcagttcg tttgggaaaa      3900
     ctgaggacga tgtctggaat cgagatcatg tgttgaggag gag                        3943
//
ID   Copia-73_AA-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-73_AA_;
KW   Copia-73_AA-I; Copia-73_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-151
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2621-2621 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 151 BP; 48 A; 30 C; 25 G; 48 T; 0 other;
     tgttgatgat gaaagcaaca cagtgatcat agtagccaag atccttacac tgttagttga        60
     cgttgtgaaa tttgttagaa aattagttca ttcccgaaat acactctaat cagtatagac       120
     gtgttttact gccctcacta ttcatcaacc a                                      151
//
ID   Copia-74_AA-I repbase;    DNA;    INV; 4101 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-74_AA_;
KW   Copia-74_AA-LTR; Copia-74_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4101
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2622-2622 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1533-2030] - Integrase core
CC   'GTATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..3950
FT                 /product="Copia-74_AA-I_1p"
FT                 /translation="MQCVIRRRFAFIASKPAILRLNVRSGVAKKSAIDSGK
FT                 KKSAKSDGESQKAKQAKGMGGAVCFLAGGDGSEGWVIDSGATSHMTSDSSF
FT                 FSSLRTDFESTVTLADGNKTKASGIGDGIVYSEDSSGNRVEVTLRDVLFVP
FT                 GLDGGLISVSRLAAKGFTVCFGAKKCDIKNSIGESVVIGDKVGSLYRLRVQ
FT                 QCSLKVSGKHHDRCQHTWHRRVGHRDPDVLKRMDSEELVSGFKLSDCGVRM
FT                 TCECCLKGKLSRKPFPAVVERKSKRPLDLVHTDLCGPMETTTPSGNRFLMT
FT                 LIDDYSRFTVVFLLKHKSEAAMRIKQYVRWVQNLFGRKPLVIRSDGGGEYQ
FT                 NRELREFYEAEGIRAQFTTPYTPQQNGVAERKNRSIQEMAICMLADAGMDK
FT                 MYWGEAVLTAVHLQNRLPSRVIGKTPFELWNGTKPDLSHVRVFGCPAYVQI
FT                 PASKRSKLDHKAVKLIFVGYSDEHKGYRFLDPLTNRVTISRDARFMELGDG
FT                 SEQVNQQDTAIVPETSCNDIELPIRSDSELRDVPEAIQSVDGESQGGSEPS
FT                 GVREDGESSEGWDTADNESEPPQEPELRREQRRTRGTLPSYLEDFVVGAAI
FT                 DTVEEPSDYREALRIGEWKQAMDAEMQSHAQNATWTLAKLPDGRKAVGSRW
FT                 VFQLKRDEEGRVVKHKARLVAQGFSQRWGVDYCEVFAPVTRHETLRAMLAV
FT                 ASKNKMYLSHFDVRTAYLHGVVEEDIYMRQAPGYAVAGKEEYVCKLQKSIY
FT                 GLKQSARCWNRALHAVLVKMGFRQCQSDYCLYVRGHGEDKVLLLVYVDDML
FT                 VGSRNPAIIAEVYEALVKQLDVTNLGAVKYFLGFNIRWEKGVYSMQLTSYI
FT                 EALVKRFGLQDSKPAKTPMEAGYMKMDVLGEPFTDTTQYRSLLGALLYVAV
FT                 TARPDVAVSVSILGRRVSAPTVMDWKAARRIAKYLKGTKDMQLVFGPGDGW
FT                 KLSGYSDADWAGDQESRRSTTGFVFLFGSGSIVWASRKRTCVSLSSMEAEY
FT                 IALSDACQELIWLRRLMIDFGEEPAGPTTVYDDNQSCLSFVQAERTTKRSK
FT                 HIDTRRHFIKD"
XX
SQ   Sequence 4101 BP; 1070 A; 861 C; 1231 G; 937 T; 2 other;
     ggttatgggc accagtgtcc ggagaacgcg gaaaaagtga cggttcggtc gagaaaatag        60
     tgagaaagtt cgcggatctc attcggcgtg atttggtgcg gttcgctggt gcgcgtgtgg       120
     ccttgcaacg aaaagcaaga tggctgaaag tgcgaaaatt tctttcccca agctgaatgc       180
     caataattgg tgctcctgga agcagcggat ggaatggctg ctggagcggg aaggcttgtg       240
     ggaggttatt agtgaaccaa aaccggagga tgaagaaatc acggatgagt ggaaagttgc       300
     cgacaggaaa gcccgtgcca acattgggct gtttcttgag gaaagccagt ttaagctggt       360
     gaagaacatt gacagtgcga aagaaatgcg gcgcgctctt cgcgaccacc atgaaaaggc       420
     gacgatgtcg accgtggtgt attttctcgg tcagttgtgc agtgcaaata tgtcagaggg       480
     agaagatatg gaagtgcatc tatcaaagat ggaagatatt ttcgacaagt tagtggctgc       540
     aggtcaaaac atcgaggagc ctttgcagat agcgatgatt tttcgcagcg tcccaccatc       600
     gtaccacacg ctggtgcaaa gtctgcggag ccgagccgat gaggattgga cggtggcgtt       660
     ggtcaaaacg cgtttgctcg acgagtatcg acagcggcag cagagaagtg attcgctttc       720
     gcaggatatg cgggcgctaa agttggatgc agtgtgtgat aagaagaaga tttgctttta       780
     ttgcaagcaa gccggccatt ttaaggctga atgtaagaag tggtgtggcg aagaaaagtg       840
     caattgattc cgggaagaag aaaagtgcaa aatcagatgg tgaaagccag aaggcaaaac       900
     aagccaaggg natgggcggt gcagtctgtt ttttggctgg tggtgatggc tctgaaggct       960
     gggtgatcga cagcggagcc acaagccata tgacgagcga ttcttctttc ttttcgtcgt      1020
     tgcgcaccga tttcgagtct accgttactc tcgcggacgg taataaaacc aaagcaagcg      1080
     gtattggaga cggtatagtt tacagtgaag acagcagtgg taatcgtgtc gaggtaacac      1140
     tgagagacgt gctttttgtg cctggcctcg acggcggctt gatttccgtg agccgattgg      1200
     ctgcaaaagg tttcactgtg tgtttcggtg cgaagaagtg cgacattaag aactcgatcg      1260
     gtgaatcagt tgtgatcgga gacaaagttg gtagtcttta ccgacttcgt gtgcagcagt      1320
     gctcgctgaa agtgtccggg aagcatcacg accggtgtca acacacctgg caccgccggg      1380
     taggccatcg tgaccccgac gtgctcaaga ggatggattc tgaagagctg gtaagtggat      1440
     tcaagctttc tgattgtggt gtccgaatga catgcgaatg ttgtctgaag gggaaacttt      1500
     cccgaaagcc cttccctgcg gtggtcgaac gtaaatcgaa gcgccctctc gatttggtcc      1560
     atactgacct ttgtgggcca atggagacca ctaccccatc tggcaataga ttcttgatga      1620
     ctctaatcga tgattacagt cgatttactg ttgttttcct cctgaaacac aagagtgagg      1680
     ctgcaatgag aatcaaacag tacgtgaggt gggttcagaa cttgttcgga cggaagccgc      1740
     ttgttattcg ctccgacggc ggcggggaat atcagaaccg ggagttacgc gaattttatg      1800
     aggctgaagg cataagagcg cagttcacca cgccgtacac gccacaacaa aatggcgtgg      1860
     ctgagcgtaa gaacagatcg atccaggaaa tggcgatctg catgttggcg gatgccggca      1920
     tggataaaat gtattggggg gaagctgtgc taacagcggt tcatttacaa aaccgattgc      1980
     catcgagagt gattggcaaa acccctttcg aactgtggaa cggtaccaaa ccagacctgt      2040
     cccatgttag ggtttttgga tgtcctgcat acgtccaaat cccagcctca aagcgctcaa      2100
     agctcgacca taaagcagtt aagctgattt ttgtcggtta ctccgatgaa cataagggat      2160
     accggttctt ggaccccttg acgaatcgcg tgaccattag cagggatgct aggtttatgg      2220
     aactgggaga tgggtctgag caagtaaacc aacaagacac ggccatcgtt cccgagactt      2280
     cgtgcaatga tattgagctt ccgatccgaa gtgattccga attaagggat gtgcctgaag      2340
     caatacaatc cgtagatggc gagtcccaag gaggatctga accaagtggt gtacgtgaag      2400
     acggcgaatc atcggaagga tgggacacag cggataacga gtctgaacca cctcaagaac      2460
     ccgaattacg gcgggaacag cggcgtacac gaggaacatt gccaagctat ttggaagatt      2520
     ttgtcgtcgg cgctgcgatc gacacggttg aagaaccaag cgattatcgt gaagcgctgc      2580
     gcattggaga atggaaacaa gcgatggatg cagagatgca gtcgcatgcg cagaacgcca      2640
     cgtggacttt agctaaattg ccagatggga ggaaggccgt cgggtcacga tgggtatttc      2700
     aactgaagcg agacgaggaa ggcagagttg tcaagcataa ggccagactg gtggcccaag      2760
     gcttcagcca gcgctgggga gtggattact gcgaagtctt tgctccagtg acgcggcacg      2820
     agacacttcg tgcgatgttg gcggtagcat cgaagaacaa aatgtacctg agtcacttcg      2880
     atgtgcgaac cgcatatctt catggagtcg tcgaggaaga catctatatg cgccaagctc      2940
     caggatacgc cgttgcggga aaggaggagt acgtatgcaa gcttcaaaag agtatatacg      3000
     gcctcaagca atcggcgcgt tgctggaacc gtgcactcca tgctgttttg gtgaagatgg      3060
     gtttccggca atgccagtcg gattactgtt tgtatgttcg tggacatggc gaggacaaag      3120
     tgttgttatt ggtgtatgtc gatgacatgc tggtaggtag ccgaaatcca gcgattattg      3180
     cggaggtgta cgaggcactg gtgaaacagt tggatgtgac taacctcgga gcggtgaaat      3240
     attttctggg cttcaatatt cgttgggaga agggcgtcta cagtatgcaa ctcaccagct      3300
     acatcgaggc gcttgttaag cgtttcgggc ttcaagatag caaacctgcg aagactccta      3360
     tggaggccgg ctatatgaag atggatgttc tcggtgagcc ttttacggat acgacgcaat      3420
     acaggagttt gttgggggcg ttactatacg tggccgttac tgcacgtccg gatgtagcgg      3480
     tgagcgtatc catcctcggg cgtagggtga gtgcaccaac ggtcatggat tggaaagcgg      3540
     caagacgtat agcgaagtac ctcaagggaa cgaaggatat gcagctagtg ttcggaccag      3600
     gagacggttg gaagctttcc ggctactccg acgcagactg ggctggtgat caggagagca      3660
     gacgatcaac aacaggtttc gtatttcttt tcggcagcgg ttctattgtc tgggcgagtc      3720
     gcaagcgaac ctgtgtcagt ctttcctcaa tggaggctga atatatcgcc ctcagcgatg      3780
     cttgccaaga actaatttgg ctgcggcgat tgatgatcga ttttggagaa gagcctgctg      3840
     gtccgacaac tgtatacgac gacaatcaaa gctgcctcag ttttgtgcag gctgagcgaa      3900
     caacaaaacg ttcaaagcac atagacacaa ggcggcactt cattaaggat cnatgtgagc      3960
     gaggcgaggt gaaccttgta tactgcccat cggaagagat gacggcggac gcgttaacca      4020
     agccactagg agggaccaag tttcggcaac tgctgggaca gtttggacta gttaatagtc      4080
     aacgtcatca gtgaggagga g                                                4101
//
ID   Copia-74_AA-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-74_AA_;
KW   Copia-74_AA-I; Copia-74_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-290
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2623-2623 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 290 BP; 55 A; 67 C; 67 G; 101 T; 0 other;
     tgttgggtgc tgcactgatg caccttaacc acggcatcgc ccatccatca tatttacagc        60
     ggggcgtttg ccaacattga caaataaaag agtgagcagc aactgctgcg agtgaattga       120
     tttccttttc cgtttttcat tgtaacgcga actttgctat cgaatacacg tttatgagag       180
     tagctcgtgt gttaagtctt tttcttttgt ccgagtgttc tcgattccgg ttcccgagtc       240
     cgcttttggt gtttgtggtc gtttcgttcg ctgcgcttat tttgcccaca                  290
//
ID   Copia-75_AA-I repbase;    DNA;    INV; 4358 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-75_AA_;
KW   Copia-75_AA-LTR; Copia-75_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4358
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2624-2624 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1527-2027] - Integrase core
CC   'AGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..4043
FT                 /product="Copia-75_AA-I_1p"
FT                 /translation="MQAELKPYLFDGKNFPNWSFRMETLLEERQLTDCIRR
FT                 EADEIPEFQVAEEDTAQVKAEKETRLAERKLLEARCKSLLVEKIADSQLEY
FT                 IKGKSTPKAIWATLQNVFAKKGISGQFYLLKQLAVMKYSEAEPMEEHLLRF
FT                 ERIIRELASADIVMHERLVVFNLLQTMPKSFQQLVTVLETLPAEQCTLDFV
FT                 KARLLSENVKRRNIGETESTLDGESAFYGERTKLKCFACGKVGHKKASCPT
FT                 KKDTEKRKPSGKPKKERANAAGSEVAFVMEPHGDATGGGKNANHFQWILDS
FT                 GASEHMVHTANCLQNVVKLDQPVPIVVASGKVVYGRHSGTVKMVSMVGGRR
FT                 INSVVNDVLYVPELQYNLFSIRRVGKLGMRVAFGNDAVEIKRGDEVVATGK
FT                 LSGKLYVLNAIVERGPVDDALVTLSVNDYELWHRRFGHIGKSGLKTLARDE
FT                 MVNGMMLNKEAFRENDICEPCVLGKHARQPFGDVPVPRSNKPLELVHSDVC
FT                 GSFTPSSWNGKRYFVTFTDDFTHFSAVYILAAKDEVLDAFKQYASMAEAHF
FT                 DSKICRLRCDNGGEYVGNEFRQFCKDRGMLLEYTVPYTPQQNGVSERLNRT
FT                 ILDKARAMVEDSGLPKKLWSEAVQAAVFIINRSPTVALNKKTPYEMWYGHK
FT                 PDVSKLRIWGSKAFSYIPKEKRSKLDSRSQACYFVGYGVNGYRLWDSRKQK
FT                 VYLARDVIVDESRFESTKVVKNTEGIEEQPIWIRPESPVEVRDEQEAEIDQ
FT                 PIDDQDDDNDGFVSLEDEEEEEVNPRRSARVRRPPARLDDYSCLAYALNAE
FT                 NYAQDLPDTVEEMKSREDWPRWREAIEEELKSLAANKTWELVDLPEGRKPV
FT                 DCKWVFKLKMKPDGTIDKYKARLVAKGFSQRHGYDYTETYAPVVKMSTVRM
FT                 MLALANQENLLVHQMDVRTAFLNGNLSEEIFMRQPRGFEEGNQVCKLNKSI
FT                 YGLKQASKAWNDRFHEFVSRIGFRRCESDSCLYIRERGGEKVFLLLYVDDI
FT                 LVVSRSFAMIGVIKKMLKTEFSMQDMGEAKMFLGLKISRDVLLGRMTLSQE
FT                 HYTRSILKRFGMEKSKPVSTPMEAGLQLKKSETSEKLDKPYRELIGCLTYL
FT                 MVTSRPDLSASVNYFSQFQSNPTEDHWVHAKRILRYLQGTADYGLVYERST
FT                 VSNRQVIGFADANWATDVNDRRSVSGILFKLHGATVCWSTRKQSTVSLSST
FT                 EAECSALADAACEAIWIQKVLGELGVQEGQPPLLYEDNQSTIAIMESAGPS
FT                 KRLKHTDVKLHFVRECVAMKKLEVRYVPTNEQQADLLTKGLSTTPFRKHRS
FT                 TIGVLPRSV"
XX
SQ   Sequence 4358 BP; 1157 A; 974 C; 1307 G; 920 T; 0 other;
     agacaggtta tgggcccaga ataccgtaac cttggagacg gaagattgtt aggctgaaga        60
     aaattttttc accgaagaag atgcaagccg aattaaagcc ctaccttttc gacgggaaga       120
     acttcccgaa ttggagtttc cggatggaga ctttattgga ggagcggcag ctgaccgatt       180
     gcattcgacg ggaagcggac gaaattccgg agttccaggt agctgaggaa gacacggcac       240
     aggtgaaggc tgagaaggag acaagactgg cggagcggaa gcttctggaa gcacgttgca       300
     agtcgttgct ggtggagaag atcgctgatt cgcagctgga gtacatcaag ggcaagtcca       360
     ctccgaaggc gatctgggca acgttacaga acgtgttcgc gaagaaggga atttccggcc       420
     agttttacct actgaagcaa ctggccgtga tgaagtacag tgaagcggaa ccgatggaag       480
     agcacctgct gcgattcgag cgaattatcc gtgagttggc ctcggcggac atcgtgatgc       540
     acgagcggct ggtggtgttc aatttgctac aaaccatgcc gaaatccttt caacagctgg       600
     tgacagttct cgaaacgcta ccggcggaac agtgcacgct cgactttgtg aaggcccggt       660
     tgctgagtga gaacgtgaag cgacggaaca ttggcgagac ggagagcacg ttggatggcg       720
     aatcggcgtt ctatggtgag cgaacaaaac tcaaatgctt tgcctgcggg aaagtgggcc       780
     acaagaaagc aagttgccca acgaagaagg acaccgagaa gcggaagccg tccgggaagc       840
     ccaagaagga aagagcaaac gctgctggtt ccgaggtggc attcgtgatg gagccgcatg       900
     gtgacgcgac gggcggaggt aagaatgcaa atcatttcca atggattctg gattcgggcg       960
     catcggagca catggtgcac acagcgaatt gcctccaaaa cgtggtgaag ttggaccaac      1020
     cggtcccgat cgtagtcgca tctggcaagg tagtgtacgg tcggcactct ggaaccgtca      1080
     agatggtgtc gatggttggt ggccggcgga ttaacagcgt ggtgaacgac gttttgtacg      1140
     tgccggaact gcagtacaat ctgttttcca ttcggcgtgt cggcaagctt gggatgcgtg      1200
     tggcgtttgg aaacgatgca gtggaaatca agcgcggcga cgaggtcgtt gccactggta      1260
     agctatccgg caagttgtac gtgctgaacg ccattgtcga acgtggcccg gtggacgacg      1320
     cattagtcac tctatcggtg aacgactacg agctttggca tcggaggttc ggccacatag      1380
     gcaagagtgg tctgaagact ctggcgcgcg atgagatggt caacggcatg atgctgaaca      1440
     aggaagcctt ccgggagaac gacatttgcg aaccgtgtgt gctgggaaag catgcaaggc      1500
     aaccttttgg agacgtccca gttccgagat ccaacaaacc gttggaactg gtgcacagtg      1560
     acgtgtgcgg ttccttcacg ccgtcatcct ggaacggaaa aaggtacttt gttactttca      1620
     cggatgactt tactcatttt agcgccgtgt acatccttgc ggcgaaagat gaggtactgg      1680
     atgcattcaa gcagtacgcg agcatggctg aagctcattt cgacagcaaa atttgccgcc      1740
     tccggtgtga caacggcgga gagtatgtgg gcaacgagtt tcggcagttc tgcaaagacc      1800
     gaggaatgct gctggaatac accgttccgt acacgccaca gcagaacggc gtaagcgagc      1860
     gtttgaaccg gacaatcctg gacaaagcga gggccatggt agaagattct ggccttccga      1920
     agaaactctg gagcgaggcc gttcaagcgg cggtgttcat catcaatcgt agtccgactg      1980
     tggcgttgaa caagaagacg ccatacgaga tgtggtatgg gcacaaacca gacgtgtcca      2040
     aactccgcat ctgggggagc aaggccttca gttacatccc caaggagaaa cgttccaagc      2100
     tggattcacg tagccaagcg tgctatttcg tgggctacgg tgtcaacgga taccgtttat      2160
     gggacagccg taaacaaaag gtgtacctcg ctcgggatgt gatcgtcgat gaatcaagat      2220
     ttgaatcgac aaaagtggtc aagaatactg aaggtatcga agagcaacca atttggatcc      2280
     gaccggaatc gccggtggaa gttcgtgatg agcaggaggc cgaaattgat caaccgatcg      2340
     acgaccagga tgacgacaat gatgggtttg tgtctctgga agatgaagaa gaagaagagg      2400
     ttaatccacg gcgcagtgca cgtgtccgga ggcccccggc aagattggac gattattcct      2460
     gtttggcgta cgcgctgaac gctgaaaatt atgcgcaaga cctgccggat accgttgagg      2520
     agatgaagtc acgggaggat tggccacggt ggcgtgaagc catcgaagag gagttgaaat      2580
     cattagcggc gaacaaaacc tgggagctgg tagacctgcc ggaaggaaga aaaccggtag      2640
     attgcaaatg ggtgttcaag ctcaagatga aaccggatgg caccatcgac aagtacaaag      2700
     cgagactggt cgctaaaggg ttctcgcagc gacatggata cgactacacc gaaacatacg      2760
     ctccggtggt gaaaatgtcg acggttcgga tgatgctggc attagcaaat caggagaatc      2820
     tgctggttca tcagatggat gttcggacgg cgtttctgaa cggaaatctc tcggaggaaa      2880
     tattcatgcg acaacctcga ggatttgagg aggggaacca agtctgcaag ctgaacaaat      2940
     ccatctacgg tttgaagcag gcatcgaagg cgtggaatga ccgatttcac gagtttgtgt      3000
     cccggatcgg ttttcgacga tgcgagagcg atagctgtct gtatattcgt gagcgcggtg      3060
     gcgagaaggt tttcctgctg ctgtatgtgg acgacatcct cgtcgtatca cgttcctttg      3120
     ccatgattgg cgtcatcaag aaaatgttga agacggaatt ttcgatgcaa gacatgggtg      3180
     aagcgaagat gttccttggt ttgaagatca gccgcgacgt gctgctggga cgaatgacgt      3240
     tgagccagga gcactacact cggtccattc tgaagcgttt cgggatggag aagtccaagc      3300
     ccgtgtcaac tccaatggaa gcgggtctgc agctgaagaa gagcgagact agcgagaaac      3360
     tggataagcc ctaccgtgag ctgatagggt gccttaccta tctgatggtt acatccaggc      3420
     cggatctcag cgcgtcggtg aattacttca gccagttcca gagtaaccca acagaagatc      3480
     actgggtgca cgccaaaagg attctgcggt acctacaggg gacagccgat tacggattgg      3540
     tgtacgaacg gtcaaccgta tcaaaccgcc aagtgattgg tttcgcagat gcaaactggg      3600
     cgactgatgt caatgacagg cgttcggttt ctgggatcct gttcaagctg catggagcca      3660
     cagtttgttg gagtacccgg aagcaaagca ccgtgtcctt atcatcgacc gaagcggaat      3720
     gttctgctct ggcagatgca gcatgcgaag caatctggat ccaaaaggtg ttaggtgagt      3780
     tgggagttca agaagggcag ccgccactgt tgtacgagga caaccaatca actattgcca      3840
     taatggagtc agctggacct tcgaagcgac taaagcacac tgacgtcaaa cttcactttg      3900
     tgcgtgaatg tgtagcgatg aagaaactcg aagttcgcta tgtgccaacg aatgagcagc      3960
     aagcagatct tctgacgaaa ggtttgtcga cgacgccgtt ccggaaacac cgttcaacta      4020
     ttggagttct tccacgatca gtttgaggag gggtgtcaag actgagcaaa ccaatcgtag      4080
     agttcaagaa gggcagccgc cactgttgta cgaggacaac caatcaacta ttgccataat      4140
     ggagtcagct ggaccttcga agcgactaaa gcacactgac gtcaaacttc actttgtgcg      4200
     tgaatgtgta acgatgaaga aactcgaagt tcgctatgtg ccaacgaatg agcagcaagc      4260
     agatcttctg acgaaaggtt tgtcgacgac gccgttccgg aaacaccgtt caactattgg      4320
     agttcttcca cgatcagttt gaggaggggt gtcaagac                              4358
//
ID   Copia-75_AA-LTR repbase;    DNA;    INV; 135 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-75_AA_;
KW   Copia-75_AA-I; Copia-75_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-135
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2625-2625 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 135 BP; 50 A; 25 C; 17 G; 42 T; 1 other;
     tgagcaaacc aatcgtagta gctttagtta aatantcaat catagcaatc atgtctgtaa        60
     ttagaataaa taaagatcac ttacaattat accgtcacaa gaagcagttc gacttttcat       120
     taactctgct attca                                                        135
//
ID   Copia-76_AA-I repbase;    DNA;    INV; 4139 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-76_AA_;
KW   Copia-76_AA-LTR; Copia-76_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4139
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2626-2626 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1469-1984] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           923..1936
FT                 /product="Copia-76_AA-I_1p"
FT                 /translation="MMAVGRGKEEDWYFDSAASSHMTRSEEGFKKHETVVN
FT                 SIDTANNQSIKSVARGFVELDLKEGSIEVQNVLLVPDLATNLLSISQICKK
FT                 RLKVVFTASKCEVLDNDGTVIASGTEEDGLYRLNQRIEKSFLTVDSNIWHK
FT                 RLGHLNQQSMVKLLSMADGIVLKKEALQDCIACLQGKHARDTFRSSSSRAE
FT                 GVLDLVHSDVCGPVEVPSLGGSRFFVTFIDDATRKVFVYCLESKGQVTEVY
FT                 EQFKSLVERQTGRKLKVLRTDNGTEYVNSRMRKSMQRDGIVHQTSCPYTPQ
FT                 QNGVAERMNRTLVEKARCMLNDAQLPKKFWAEAISTAAYLVNRSPS"
FT   CDS           2024..4129
FT                 /product="Copia-76_AA-I_2p"
FT                 /translation="MYHVPKQKRRKFDVKSNEGIFVGYADNSKGFRIFNPD
FT                 SGDVIITRDVVIVDEGRPAKFLRKQELVEFTELFSWVETTEDNLQAGSPPR
FT                 VQEEEAMVPADQANEDVTNQANIFDRSSGNVVPALALPPQLTRPADEQQGL
FT                 RRSGRERVFPGKYSDFVCFSSTAVQNFSEQFDLDDTNDEAIDDDGGDPTSY
FT                 AEALKRADHRHWTKAMQEELQALEDNGTWVLTDLPHGRKAIRNKWVFKTKR
FT                 GVDGEIERYKARLVIKGCSQRAGIDYNEVYSPVVRYSTIRFLMALAVQHDL
FT                 DIEQLDAVTAFLQGKLKDEEIYMEQPEGYVGDPTKVCKLQKALYGLKQSSR
FT                 VWNIQLDESLKKFGLIRSSVDPCLYYILEEDGKMLFVTIYVDDFLVFTNNA
FT                 EVKEKLKTYLNSRFKMKNLGEAKFCLGLRISRDRLNGKLSLDQQPYIEDIL
FT                 KRFNMANSKAVATPMDPSIKLDKSMCPKTPDEVADMKDVPFKEAVGSLLYA
FT                 AQATRPDIAFAVNMVSQFSANPGRQHWEAVKRIMRYLRGTCDAKLMYTRSG
FT                 ESQLTGYTDADWGGEPDTRKSTTGYVFKMMGGAISWSVKRQPCVALSSCEA
FT                 EFIALSRTTQEALWWQQLLSQICGEQPIPIFCDNQSAICMTRNDGCNSRTK
FT                 HVAIRYRFVKDEVEKGNIEIHYIPTHEHPADGFTKALAKQKHNQFKALTGI
FT                 EG"
XX
SQ   Sequence 4139 BP; 1208 A; 844 C; 1139 G; 941 T; 7 other;
     agtggttatg ggcccagagt tggtcatagc ctgaaaagta cgagaagcgc attttttcga        60
     tttggaagcc atgatcccga gaggcgatga gcaaaccgtt ggttctggaa gcggcacgag       120
     cggaagtacg aggacggcat ctagtggcgt aggattaccg actggtggtg atggtctgcg       180
     gcccggaggt gttgtgcgtg cctacggaaa ccctgtgaac ctttcaaaca tggagaagct       240
     acgcggacgg gaaaattacg catcatgggc cttcgctatg aaaatgacgc tgattagaga       300
     aggatcctgg cgagctgtga agccattaga ggggcaggca gttgatccgg agacgtctga       360
     acgagcattg gccgcaatct gcctgagcat agagaagaac atctacagct tggtaaaaaa       420
     cgttgaaacn gcgaaagaag catgggaaaa gctccagaag gcgtttcaag ataacggact       480
     ncttcgacgt tttggattgc tggacaagtt gacgtcagcg aagttggagg aaatcggttc       540
     cgttgaagat tacgtcgacg tgttggtaac cacggcgcag agcctgagcg aaattggatt       600
     cgaggtaaac gaccagtggt tagcatcgat cttattgaag ggtttgccgg agtattacaa       660
     ccccatgata atgggaatgg aagcttcggg catcgagctg acggctgacc ttgtgaaagc       720
     gaaaatactt caagatgtga agtggccgtt aaaaggttcc ggagcggagg gcgccttgta       780
     caccaaacag aatcataaat caagacacgc gaaaactgat aagaaancag gaacatgctt       840
     caattgcagg aaacctggac actttgctgc acaatgtccg cagaagcagc caacgaaagg       900
     caaaggtaag gcgttgtgtg caatgatggc tgtgggcaga ggaaaagaag aagattggta       960
     ctttgactca gctgcaagca gccatatgac cagaagcgag gaaggcttta agaagcatga      1020
     aactgtggtg aattcgatag atacagcaaa taatcagtcc atcaagtcgg tcgccagagg      1080
     gtttgtcgag ctggatctca aagaaggaag catcgaagta cagaacgtgc tgcttgttcc      1140
     tgatttggcc acaaacttgt tatcaatcag ccaaatttgc aagaaaagat taaaagttgt      1200
     tttcacggcg tcgaaatgtg aagttctgga taatgatggc acggtaatcg cgtcaggaac      1260
     ggaagaagat ggactatatc ggctgaatca gagaatagag aagtcgtttc taacggtgga      1320
     ttccaacatt tggcacaagc gattaggaca cctgaatcag cagagtatgg tgaagctttt      1380
     gtcgatggca gatggaatcg tgctgaagaa ggaagctctt caagattgta tcgcttgtct      1440
     tcaaggtaag catgctcgag acacgtttcg ttctagttcc tcgagagcag aaggtgtact      1500
     ggacttggtg cattcggatg tctgcggtcc ggttgaagtt ccatcgcttg gaggaagccg      1560
     gttcttcgtc acttttatcg atgatgcaac tcggaaggta ttcgtgtatt gtttggagtc      1620
     caaaggtcaa gtcacagagg tatacgagca gttcaagtca ctagtcgaac ggcaaactgg      1680
     caggaagttg aaggtattgc ggacggacaa tggcacggaa tatgtcaatt caagaatgcg      1740
     gaagagcatg cagcgagacg gtatcgtgca ccaaaccagt tgtccttata cacctcaaca      1800
     aaatggagta gccgagcgga tgaaccgcac gttagtggag aaggcaagat gtatgctgaa      1860
     cgacgctcaa ctaccaaaga agttttgggc agaagccatt tccacggcgg cgtatctagt      1920
     gaatcgcagt ccgtccagnt cacttgacnt ggttacaccg gaggaagcat ggtctaaaca      1980
     aaagccgaat ctacagcact tgaaggtatt tggatcgcgt gcaatgtacc acgtcccaaa      2040
     gcagaagagg aggaaattcg atgtgaagtc caacgaaggc attttcgttg ggtacgcaga      2100
     taactcgaaa ggatttcgta ttttcaaccc ggattctggc gacgtgatca tcactagaga      2160
     tgtagtcatt gtggatgaag gacgaccagc gaagtttctg aggaagcaag aattagttga      2220
     attcacagaa ctgttctcct gggttgaaac aactgaagat aatcttcaag ctggcagtcc      2280
     accaagggtc caagaagaag aagcaatggt accggccgat caagccaacg aagatgttac      2340
     caatcaggcc aacattttcg atcgttcttc gggcaacgtg gtgcctgctc ttgcgctccc      2400
     accgcaactt acaagaccag ctgatgagca gcaagggttg aggcgcagcg gtcgggagcg      2460
     cgtattcccg ggcaagtatt ctgattttgt atgctttagt tcaactgctg tccagaattt      2520
     ttccgaacag ttcgatcttg atgataccaa cgacgaagcg attgatgacg acggaggaga      2580
     tccgacgagt tacgctgagg cgttgaagcg agcggatcat cgtcactgga ctaaggcgat      2640
     gcaagaggag cttcaagcgt tggaagacaa tggtacttgg gtcctgactg atctaccaca      2700
     cgggagaaaa gcgattcgga ataaatgggt tttcaagacc aaacgaggag tagatggcga      2760
     aatagagcgg tataaggcaa ggcttgttat aaaaggatgt tctcaacgag ccggtatcga      2820
     ctacaatgaa gtntattccc cggtagtgcg atactctacc atccgcttcc tcatggcgtt      2880
     agcagtncaa catgatctcg acatcgagca gcttgatgcg gttacagcgt ttctgcaagg      2940
     aaaactcaag gatgaagaga tatacatgga acaacccgaa ggttacgtcg gcgatcccac      3000
     gaaggtgtgc aagttacaaa aggctttata cggactgaag caatcgagca gggtgtggaa      3060
     tattcagctg gacgaatctc tgaagaagtt cgggctaatt cgatccagtg tagatccttg      3120
     tttgtattat atcctcgaag aagacggcaa gatgctattc gtgacgatct atgtggatga      3180
     ttttctggtg ttcacgaaca atgcagaggt taaggaaaaa ttgaaaactt acctgaattc      3240
     tcgattcaag atgaagaacc taggagaggc gaaattttgt ctgggactgc ggataagtcg      3300
     tgaccgattg aatggaaaac tttctctaga tcaacaaccg tatatcgaag atatcctgaa      3360
     gagattcaac atggcaaatt caaaagcagt tgcgacgcca atggacccaa gcatcaaact      3420
     cgacaagtca atgtgcccca agacgccaga tgaagttgca gatatgaagg atgttccttt      3480
     caaagaagca gttggttctc tgttatatgc agcgcaagct acaagaccgg acatcgcatt      3540
     tgctgtgaac atggtaagcc aattttcagc taatcctgga cgacaacact gggaggctgt      3600
     taaacggatt atgcgttact tgcgcggcac gtgtgacgca aaactgatgt acacgagatc      3660
     tggtgagtct cagctgaccg gttatacaga tgcggattgg ggaggagaac ccgatacgcg      3720
     caaatctacg accggatacg ttttcaagat gatgggagga gccatttcgt ggagcgtgaa      3780
     gcgacaacct tgcgtggcgt tatcatcatg tgaagcggag ttcatcgcct tatctcgaac      3840
     cacacaagag gcgctctggt ggcagcaact tctctcgcag atctgtggtg agcagccaat      3900
     acctatcttt tgtgacaatc aatccgcaat atgtatgacc cggaacgacg gttgtaattc      3960
     ccggacgaag catgtggcca tccgttaccg attcgtgaag gacgaagttg agaaaggtaa      4020
     catcgaaatt cactacattc ctactcatga acatccagcg gatgggttta ccaaagcttt      4080
     ggcaaagcag aagcacaatc aattcaaggc attgaccggg atcgaaggtt aaggaggag       4139
//
ID   Copia-76_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-76_AA_;
KW   Copia-76_AA-I; Copia-76_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2627-2627 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 146 BP; 41 A; 29 C; 25 G; 51 T; 0 other;
     tgttggagta gtaacctgcg atccaagtaa taccgtatct aggagcaacc ttagtaaccg        60
     ttgtattcct ggataaatag ttgtaataaa ttttcattcc ttgttcagac tttgaccact       120
     acgcaagtgt tttatttcca ttcaca                                            146
//
ID   Copia-78_AA-I repbase;    DNA;    INV; 4241 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-78_AA_;
KW   Copia-78_AA-LTR; Copia-78_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4241
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2628-2628 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1643-2176] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           191..4231
FT                 /product="Copia-78_AA-I_1p"
FT                 /translation="MAEEDRVERFRLPLFDGSNFASWKFRMQVLLEEHDLL
FT                 ECVEADVADVEALKEEPGDTQEVKQQKERDRAKWLKKEKKCKSLIISRIHD
FT                 SQLEFVQGKRTPKEIWSALSRVFERRSIASRMHLKRQMLALRHDGGPLQDH
FT                 FLRFDRLVREYRGTGAEMEELDVICHLLLTLGPSFDTVVTALETMPEAHLN
FT                 MEFVKCRLLDEETKRKGMCSDQGGKESAVFVGSKQPNKKFKCFGCKKEGHK
FT                 LSECPTKKKAKSDEKFREKYSPKAHSAEAGPSGVCFAASSGDNEVRVFPEE
FT                 SRVQWFIDSGCSDHIVNDRALFETLKPLKCPVEIAVAKHGESIVAKHVGTV
FT                 KVVANVNGMGVECTVKNVLFVPESRCNLFSVVKVDEAGMRVTYEKGRVVIH
FT                 RGSEVVAMGSRSGKLYRLDFYTDKRSASDSLMTCGLIPKRLELWHRRFGHL
FT                 NARSLEKLISGGMVSGLELTSAKMDKSVVCEPCVAGKQTRKPFPERNEKRS
FT                 SRVLELIHSDVCGPVTPVGVGGVNYFVTFIDDWSHFTMTFLMKNKSEVFEL
FT                 FQQYEALVTAKFGVKVSRLRCDNGGEYRSREFDEFCRRKGIDVEWTVPHTP
FT                 EQNGVSERMNRTLVERTRSMLEDSGVEKRFWAPAIQTATYLVNRSPSRAIG
FT                 DGVTPYLLWEGKKPDVSKLRAFGCTAYVHVPKELRKKIDSKTWKGVFVGYA
FT                 HNGYRIWNPKSKKIVHARDVDFAEEESGQVNVKPKQSSSVVMMPPVAADDV
FT                 AEEAPEAVGEASGSSAGGSDGAVSEESDEEFDSFREDEEVVPAVDAESGRP
FT                 QRQRRPPVWQQDYDVDYAAFAYNAVTYVQDVPRSLAEAKKRGDWCLWKKAV
FT                 EEEMASMQKNQTWTLAKLPANRTPITSKWVFKIKRGVNGDPDRYKARLVAR
FT                 GFSQRYGFDYCETYSPVAKLDTVRTMLALANRDKMVIHQMDVKTAFLNGQL
FT                 QEEIYMVQPEGFTDGTNQVCRLQRSIYGLKQASKSWNDRFHGFMVNRLGFS
FT                 SSPNDPCLYSRRIGTETVIVVLYVDDVIVAGTSLKVVETVKRCFSSEFEMT
FT                 DVGEIHSFLGIRIDRDVETGVLRLSQRQYLEDLLRRFQMDECKPISTPMEC
FT                 RLKLPRGEEEKRTVQPYRELVGCLTYASLTTRPDLSAAVNFFSQFQSCPTD
FT                 EHWSYLKRVLRYIKGSLDIGLEYRADSKAPLLEVFADADWANDPADRRSVS
FT                 GCLFKVAGCCVGWMTRKQQVVSLSSTEAELNALCAAACFEIWLVRLLKDLG
FT                 KEAKLPVFFYEDNQSTIRIAEDSKNHGRLKHVDVKYHFLRDLVKDGRIRIR
FT                 YISTADQVADMMTKGLPATALRRHRSKAGLVSCCD"
XX
SQ   Sequence 4241 BP; 1066 A; 882 C; 1316 G; 977 T; 0 other;
     ataggttgtg ggcccgggtc gtttccgaaa cggtttactg gttaaaagcg aaagtagcgt        60
     tcgcgatgcg tgcgcgtgtg cgagcccgca aagcagaata tcaacaatag gaaacccttt       120
     gatcgcatcg cgttcgcgca cgcagacgcg ttactatggc cgcaccgtaa cagtggaagt       180
     agtgttcgcg atggccgagg aagaccgtgt ggaacgtttt cgcttgccgc tgttcgacgg       240
     gtcgaatttc gcgtcgtgga aattccgaat gcaggtgctg ttagaagagc acgacctgct       300
     ggaatgcgtt gaagctgatg ttgctgacgt ggaggcgcta aaagaagaac ccggtgatac       360
     gcaggaagtg aagcagcaga aagaacggga tcgagccaag tggctgaaga aggaaaagaa       420
     gtgtaaaagt ttgatcattt cccgaatcca cgactcccag ttggagtttg tgcagggaaa       480
     acgcacaccg aaagagattt ggtctgcgtt gagtagagtg ttcgagcgac ggagcatcgc       540
     cagccgcatg cacctgaagc ggcagatgct ggctctgcga cacgacggtg gtccattgca       600
     ggatcatttt cttcgtttcg accggttagt gcgtgagtac cgcggtacgg gagcagagat       660
     ggaagaacta gatgtgattt gccatctttt gctcactttg ggtccttcgt tcgataccgt       720
     cgtcaccgcg ttggaaacga tgccagaggc gcatttgaat atggaattcg tgaaatgccg       780
     cctcttggac gaagaaacca agcggaaggg tatgtgtagt gaccaggggg gtaaggaatc       840
     agctgttttc gtgggctcaa agcagccgaa taaaaagttc aagtgcttcg gttgtaagaa       900
     agaggggcat aagttgtccg agtgtcccac gaaaaagaaa gcgaaaagtg atgagaaatt       960
     tcgcgagaag tattccccga aagcgcactc agcagaggct gggccgagcg gtgtttgttt      1020
     tgctgctagt agtggcgaca atgaagtgag ggtgtttccc gaagaatccc gtgtacagtg      1080
     gttcatcgat tcgggatgct ccgaccacat cgtgaatgac agagcattgt tcgaaactct      1140
     gaagccgcta aagtgtccgg tcgagattgc ggtcgcgaaa catggtgaat cgatagttgc      1200
     caaacatgtt ggtaccgtta aggtggtggc caatgttaac ggtatgggag tggaatgcac      1260
     ggtgaaaaat gtgttgttcg tgcctgagtc gcgctgtaac cttttctctg tggtgaaggt      1320
     tgacgaagca gggatgagag taacttatga aaagggccga gtggtgattc atcgcggatc      1380
     ggaagttgtc gcgatgggct cgcgttccgg taagttgtat cgtctcgatt tttacacgga      1440
     caaacgtagt gcgagtgact ccttgatgac gtgtggactg attccgaagc gattggaatt      1500
     atggcatcgc agattcggtc atttgaacgc gcgaagtctc gagaaactga tttcaggcgg      1560
     tatggtttcc ggactcgagc tgaccagtgc gaaaatggac aaaagtgtgg tgtgcgagcc      1620
     gtgtgtcgcg ggaaaacaga cccggaaacc gtttccggag cgtaacgaga agcgatcgtc      1680
     gcgtgtgctg gagttaatcc attccgacgt ttgcgggccg gtaactcctg tcggtgttgg      1740
     aggagtgaac tattttgtca cctttatcga tgactggagt cattttacga tgaccttctt      1800
     gatgaagaac aaaagtgaag tgttcgaact gttccaacaa tatgaagcgt tggtcacagc      1860
     gaagttcggc gtgaaagtga gccgtttgcg gtgtgacaat gggggagagt accgcagccg      1920
     tgagtttgac gaattctgtc ggcgaaaggg gattgatgtt gagtggacgg ttccgcatac      1980
     acccgaacaa aacggggtta gcgagcggat gaaccgcaca ctagtggagc gtacgcggtc      2040
     aatgctcgag gactcgggag tggaaaagcg tttttgggcg cccgcgattc agacggcaac      2100
     gtacttggtt aaccgaagcc cgtctcgtgc gattggtgat ggtgtgactc cctacctgct      2160
     gtgggagggt aagaagccgg acgtgtcgaa gctacgagcg ttcgggtgca ctgcttacgt      2220
     ccatgtaccg aaagagttga ggaagaagat cgactcgaag acctggaagg gtgttttcgt      2280
     tgggtacgcc cataatggct accgtatatg gaacccgaaa tcgaagaaga tcgttcatgc      2340
     tcgtgacgtg gatttcgcgg aggaggagag tggtcaagtg aatgtgaaac cgaagcaatc      2400
     atctagtgtg gtcatgatgc ctccagtagc cgctgatgat gtggccgaag aagctccaga      2460
     agctgtcggt gaagcaagtg gtagttcagc tggaggatca gacggagctg tttcagaaga      2520
     gtctgatgaa gagttcgata gttttcgcga agatgaagag gtcgttccgg cggtggatgc      2580
     ggaatccggc agaccgcagc ggcagagacg ccctccggtt tggcagcaag actacgatgt      2640
     agattacgca gcgtttgcat acaatgcggt aacctacgtt caggatgtgc cgagatcgct      2700
     tgcagaggcg aagaagagag gagactggtg tctgtggaag aaggccgtcg aagaggagat      2760
     ggcgtcaatg cagaagaacc agacttggac tcttgcgaag ctgccagcaa accgaacacc      2820
     gataacaagt aagtgggtgt ttaagatcaa gcggggagta aacggtgatc ccgaccgtta      2880
     taaagctcgc ttagtggcta gaggatttag ccagcggtac ggattcgact actgtgaaac      2940
     atactcacca gtagcgaagc tcgatactgt aaggacgatg ctggctttgg cgaacaggga      3000
     caagatggtg atccaccaga tggacgtcaa aacggcgttc ctcaatgggc agctccaaga      3060
     ggaaatctat atggttcagc ctgagggatt caccgatggg acaaaccaag tgtgccgcct      3120
     gcagaggtca atatatggcc taaaacaagc atcgaaatct tggaacgatc gttttcacgg      3180
     gttcatggtg aaccggctgg gtttcagcag tagcccgaat gatccttgcc tgtactctcg      3240
     taggatcggg actgagactg ttatcgttgt gctttacgtt gacgacgtca ttgtggccgg      3300
     aacttccctg aaggtggtgg aaactgtgaa gcgttgtttt tcgtcagagt tcgagatgac      3360
     ggatgttgga gagatccaca gcttcttagg gatccgcatc gatcgagatg tggaaacagg      3420
     agttttgcgt ttgagtcagc gacagtacct ggaggacttg cttcggcgat tccagatgga      3480
     cgagtgcaaa ccgatatcca cgcctatgga gtgtcggttg aaacttccga gaggtgaaga      3540
     ggagaagcgc acggtgcaac cgtaccgcga gctcgtcggt tgcctgacat acgcatcact      3600
     tacaacgaga ccggacttat cggcggcagt gaatttcttc agccaatttc agagctgccc      3660
     gactgatgag cactggtcgt acctgaaacg tgtattgagg tacataaaag ggtcattgga      3720
     cattggactg gagtatcgtg ctgattcgaa agcgccgtta cttgaagtat tcgcagacgc      3780
     ggactgggcc aacgatccgg cggatcgccg atcagtcagt ggatgtttgt tcaaggtagc      3840
     tggatgttgt gttggctgga tgacgcggaa gcaacaggta gtatcgcttt cttcaactga      3900
     agccgagcta aacgcgcttt gtgcagcggc ttgttttgag atttggctgg ttagacttct      3960
     caaggattta ggaaaggagg ccaaactgcc agtattcttc tatgaagata accagtcgac      4020
     aataaggatc gcggaggaca gcaagaatca cggtcggctc aagcatgtcg acgtaaaata      4080
     tcacttccta cgtgatctgg tgaaggatgg ccgaattcgt attcggtaca tttcaacagc      4140
     ggaccaagtg gcagatatga tgaccaaagg tctccctgcg acggcacttc gtcgccatcg      4200
     ttcgaaagcg ggattggtaa gttgctgcga ttgaggaggg c                          4241
//
ID   Copia-78_AA-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-78_AA_;
KW   Copia-78_AA-I; Copia-78_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-200
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2629-2629 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 200 BP; 49 A; 47 C; 32 G; 72 T; 0 other;
     tgttggaata gcaatcctgg caaccctacc actacaacct tactggtgtt gctatgcgca        60
     cctttgtgtt tatttgcttt tagactttgt ttttctacca ctgtattatt aaaagagacg       120
     ccattaaagt aaaacgtgtt acagagtaat tccttcgtgt tttccgtttt aattccgtct       180
     tctgcccatc cgaaaccaca                                                   200
//
ID   Copia-79_AA-I repbase;    DNA;    INV; 4138 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-79_AA_;
KW   Copia-79_AA-LTR; Copia-79_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4138
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2630-2630 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1504-2043] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           904..4122
FT                 /product="Copia-79_AA-I_1p"
FT                 /translation="MFLTSDKMPNKQNKIQWFIDSGATEHICNDKRLFSKL
FT                 VPLEQPMRIAVAKNGEWVTANFAGDVPVLAVVNGKTIEATVAGAVFIPEAR
FT                 CNLFSISKIEAAGMKVVFENGRVEIQRGSKVVATGQRREKLYELNFYAAKG
FT                 ECSSLYFSGKISKATELWHRRYGHLGERNLSCLIKNGMVNGLKTNGGDKST
FT                 IVCEACVAAKQTRNPFTLQEERRSSRVLELVHSDVCGPVTPTGWNGHKYFV
FT                 TFIDDWSRFTVVYLLHSKDEVAQRFEEYEAQMTAKFGVKISRFRSDNGGEY
FT                 TCKEMRSFCQRKGIKMEFTVPYCPEQNGTSERMNRTLVEKARSMVFDSEID
FT                 RIFWGEAVQTAAFLANRCPASAIGQKLTPYELFEGRKPDVSKLRVFGSVAY
FT                 CHIPKEKRRKLDVKSWKGVFVGYGTNGYRVWKPQERKIVTVRDVIIDEDSR
FT                 VSANKKKIMKKEEKWTESVVGPPIIDDIDDQGDSDNEEENEHEPYEEEQEV
FT                 PEREVSEIFDSCDDTLEDETVDEASGGETTGATSSGRVTKPPVWAKDYDMT
FT                 FAGVALGALDYVENLPDSIAELKKRSDWPKWQAAIQDEMDSLRRNKTWTLE
FT                 KLPKGRVPVSCKWVFRVKPGENGSPDRYKARLVARGFSQRFGFDYTETYSP
FT                 VVKLDTLRTMLAVANQERMFVHQMDVRTAFLNGDLSEEIYMSQPEGFVKGE
FT                 DLVCRLHKSLYGLKQASKAWNDRFHRFVARLGFQRSNSDQCLYWKGEMDKR
FT                 IYLILYVDDILVIGRNLKEIKIVKGCLSKEFDTTDVGEVASFLGMRIERNV
FT                 EKRILRISQRRYLEGLLNRFNMNDCKPSKVPMECRLKLQKGEESQRTSKPY
FT                 RELIGCLMYVTLTTRPDLCASVNYYSQFQSCPTEEHWTHLERLLRYIKGTV
FT                 DLGLEYRGDDNAEIITAYCDADWANSIIDRRSVTGYVFRVFGCVTTWLTRK
FT                 QQTVSLSSTEAELVALSTAVCEGVWLIRLLEEIGYKLNVPVTYFEDNQSTI
FT                 KVANDPKDHGRLKHVDVKLQYIRSLIQQGRIRLEYIPSEQQVADIMTKSLP
FT                 GGPFCRLREELNLSMI"
XX
SQ   Sequence 4138 BP; 1142 A; 810 C; 1212 G; 972 T; 2 other;
     ataggttatt ggcccaggaa cgattcctga tcgcgattcg gtcgaatgta gtgttttcgg        60
     tcgcaaaagt gcgtaattat ggaaagccac gatcgggagg agactcttcg cgtcgccatt       120
     tttgatggca cgaatttcgc cgcgtggaaa ttccggatgc tcaccttgct tgaagagcat       180
     gagttggtgg agtgcattga aacggaattg gatgatgtgg cggagctcaa ggtcgaacct       240
     ggtgacaccg cggaagtgag actccagaaa gcgaaggctt tggaaaagcg tcagaagcga       300
     aaccgaaaat gcaaatcgat gttggtggcg cgcattcacg acgaccagct ggagcacctt       360
     caaggacgtg aaactcccaa gcagatgtgg gatgcgttgg tcaggatttt cgagaggaaa       420
     agcgtagcga agcgacttca cttgaatcgg cagatgcacg agctcaggta cacggagggc       480
     acgttgcagg atcatttcat ccgattcgat cgattgattc gtatgtaccg caacgctggc       540
     ggtcagatgg acgatatcga tgttgtttgc cgattattgc tgtcgctggg atccgagtac       600
     gatgcggtgg tgacctctat tgaatcgcag ccggaagagc agctaacgat ggactttgtc       660
     aagtgccggc tgctcgacga ggaaattaaa cggaagagta cgtcgncgag cagcagtgga       720
     tgtgtgaaaa acgaagcggc tttctctgga cgtgcatcgc ggaagcaacc aacgaagagg       780
     cccctgaaat gtttcggttg tcagaaagag ggccacaaag tgacggactg tcccgaaaag       840
     aagaaggctc agaagaagta ctccgggaag gcgcaggtgg cagagaagga cgaagacggt       900
     gtgatgttcc tgacgagtga taagatgccg aataagcaaa acaaaatcca gtggttcatc       960
     gactccggtg ccacggagca catttgcaac gacaagcgat tgttttcgaa gctggttccg      1020
     ttggagcagc caatgcgtat tgctgttgcg aagaatggag agtgggtgac tgcaaatttt      1080
     gctggtgatg ttccggttct agcggtggtg aatggaaaaa ccatcgaagc gacagtggca      1140
     ggagcggttt tcattccgga ggcccgctgc aacttgtttt ccatcagcaa aatcgaagct      1200
     gcaggtatga aagtggtgtt cgagaacggt cgagttgaaa tccaacgagg ctccaaggtg      1260
     gtggccaccg gacaacgtcg tgagaagctc tacgaactca atttctacgc agcaaaaggt      1320
     gagtgcagct ctttatactt ctcggggaaa atcagtaagg cgactgagtt gtggcatcgt      1380
     cgttatggcc atctcggaga gcgaaatttg tcgtgcctca tcaaaaatgg aatggtgaat      1440
     ggcctgaaaa caaacggagg ggataagtct acgattgttt gtgaggcntg cgtagcagct      1500
     aagcaaacga gaaatccttt cacgctgcaa gaagagcggc ggtcgagtcg ggtactggag      1560
     ctcgtacact ctgacgtctg cgggccagtg acgccgacgg gatggaatgg ccacaaatat      1620
     ttcgtcactt tcatcgacga ttggtcgagg tttacggtgg tgtaccttct tcactcaaag      1680
     gatgaagtgg cacagcgttt tgaggagtat gaagcacaga tgactgccaa gtttggagtg      1740
     aaaatttctc gcttccgttc cgataacggc ggggagtata cctgcaagga aatgcgatcc      1800
     ttttgtcaac ggaaaggcat taagatggag tttactgtac cttattgtcc agagcagaac      1860
     ggcactagcg aacggatgaa ccgaacacta gtcgagaagg ctcgttcgat ggtgttcgat      1920
     tccgagattg atcgcatctt ctggggtgaa gcggtgcaga ccgctgcgtt cttggcgaat      1980
     aggtgtccgg ccagcgccat aggtcagaag ttgacaccgt acgagttgtt cgaaggaaga      2040
     aaacctgatg tgtcaaaatt gcgagtgttt ggatccgtgg cctactgcca cattccgaaa      2100
     gaaaagcgaa gaaaacttga tgtgaaaagt tggaagggag tcttcgtggg atatggcacg      2160
     aatggttatc gagtttggaa gccccaggag cggaaaatcg tgactgttcg ggatgtgatt      2220
     atcgacgagg attcgagagt gagtgcaaat aagaagaaga ttatgaagaa agaagaaaag      2280
     tggactgaaa gtgtggtcgg ccccccaatt attgatgaca ttgatgatca aggggattcc      2340
     gataatgaag aagaaaacga acatgaacca tatgaagaag aacaagaagt gcctgaacgt      2400
     gaagtgtccg agatcttcga ttcgtgtgat gatactctgg aagatgaaac tgttgatgaa      2460
     gcaagtggtg gtgagacgac cggtgcgacg tcatcgggtc gagttacgaa gccacccgtg      2520
     tgggcaaagg actatgacat gacttttgct ggtgttgccc tgggtgcatt ggactacgtg      2580
     gaaaatcttc cggacagtat cgcggaattg aagaagaggt ctgattggcc gaagtggcaa      2640
     gcggcaattc aagatgaaat ggattctttg cgacggaaca aaacctggac tctggaaaaa      2700
     ctaccgaagg gtcgagtgcc agtttcgtgt aagtgggttt ttcgggtaaa acctggcgaa      2760
     aatggaagtc cggatcggta taaggctcgg cttgtcgcta gaggttttag ccaacgtttc      2820
     gggtttgatt atactgaaac ctactcgccg gttgtgaagt tggatacgtt gcgcaccatg      2880
     ctggctgtgg caaatcagga aaggatgttt gtacaccaga tggacgtccg cacggctttt      2940
     ctcaatggtg atctgagtga ggaaatctat atgtcacaac ctgaaggttt cgtaaaagga      3000
     gaggatttgg tctgtcgtct acataagtcg ctttacggcc tcaagcaggc gtcaaaagct      3060
     tggaacgatc gtttccatcg attcgttgcc cggctaggat tccagaggag taacagcgat      3120
     cagtgtctgt actggaaagg tgagatggac aagaggatct atctaatcct atatgtagat      3180
     gatattctgg tcatcggacg caacttgaag gagataaaaa ttgtcaaggg atgtctttca      3240
     aaggagttcg acacgactga cgttggtgag gtcgcaagct ttcttggcat gcgcattgaa      3300
     aggaatgtgg aaaagcggat tttgcgcatt agccagagaa gatacctgga gggtttgttg      3360
     aaccgtttca acatgaacga ctgtaagccc agcaaagtac ctatggagtg tcggctgaaa      3420
     cttcagaagg gagaagagtc acagcgtaca tcgaaaccgt acagagagct aataggttgt      3480
     ttaatgtacg taacattgac tactcgtccg gatctttgtg cttcggtcaa ctattacagc      3540
     cagttccaaa gttgtccaac tgaggaacat tggacacatc tcgaacggct cctcagatac      3600
     atcaagggta ctgtggacct aggactggag tatagaggtg atgataatgc agaaataata      3660
     acggcttatt gtgatgcgga ttgggccaac agtatcatcg acagacgttc tgtgacgggt      3720
     tatgtcttca gagtgttcgg ctgtgtgacg acttggctaa ccaggaaaca acaaactgta      3780
     tcattgtcat cgacggaagc cgaattggtc gcactcagta cagcagtttg tgaaggtgta      3840
     tggctgattc gattgttgga ggaaataggt tacaagctga atgttcccgt aacgtacttt      3900
     gaagataacc agtcaaccat aaaagttgca aatgatccca aggaccatgg cagattgaaa      3960
     catgttgacg tgaagctgca gtacatcaga agtttgattc agcaggggcg tattcgactg      4020
     gagtacattc catcggaaca gcaagtggct gacatcatga caaagtctct acctggtgga      4080
     ccattttgtc gactgcgaga ggaactgaac ctctcaatga tctgaaattg agcagggg        4138
//
ID   Copia-79_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-79_AA_;
KW   Copia-79_AA-I; Copia-79_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2631-2631 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 209 BP; 55 A; 36 C; 42 G; 76 T; 0 other;
     tgatgaagta tacaatttct gattagtgtg taagcgattc ttttatgcat agcgcccaat        60
     gctatttccg atgtttacgc gccaaagcgc tgtttgtgtg tttgcctttc attagtattc       120
     tgaactcaat aagagaaagt caacaataaa tgttcgcggt tttattaaag ttaattccgg       180
     tgttttattg tccgaaagta gttcgccca                                         209
//
ID   Copia-7_AA-I repbase;    DNA;    INV; 4207 BP.
XX
AC   AAGE02017938;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_AA_;
KW   Copia-7_AA-LTR; Copia-7_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017938; Positions   10057    5851.
XX
CC   Positions [1570-2073] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..4197
FT                 /product="Copia-7_AA-I_1p"
FT                 /translation="MQEPANSPDCRGSARVCQGTKDGQRHLGRAEEQLRTD
FT                 WNCRQVNPEKAVPRAAAGGRWRREGFLAPVREDSARAKDGGSQHAGGRRGV
FT                 STTAGASRILRSAYHGSGETIQPQQLTLEYVKKRLLDEQVKRLNSSPAGES
FT                 ENSGDSAFSGKKLGIKCFGCGKYGHKRAECPENRPAEDSSSTRLRKKNGKF
FT                 SRKTKFGASVAEEMTFVATETMECLSVATVSKKNVDWILDSGATDHMVKSK
FT                 TFFDEMHALDNKVRIAVAKSGQAVFAEYAGTVKVNMLIDGRKVPAVVKDVL
FT                 YVPQLACNLFSVRRLEDNGMMVRISNGTVKVLKNGSVVATGRRAGQLYKMD
FT                 IELRDVAYSASGGECEAGAMASKKDGFDLWHRRFGHLGTANMKTLWKHGMV
FT                 ETTTKISDWPERCVCEVCLQGKQSRQPFEDGGERRASRPLEIIHSDVCGPF
FT                 TQKTWDKKRSFVTFIDDFSHFTVVYLLESKDEVQSKFEEYCARVTAFFGTR
FT                 VSRLRCDNGGEYTGKSFRKYCRTQGINVEATIPYSPQQNGVAERMNRTLLE
FT                 KARSMVHEAGLHKSMWGEAVLTAAYLCNRSPTSALKEKKTPYEIWYGRKPN
FT                 IDKMRVFGSVAHTWVPKEKRDKLDPKSEKNVMVGYTANGYRIWDPRKRRVT
FT                 VARDVVFDEQKDGSVAAPNNAKQVLWRNDDTEDCEDEPGAPVVGQPNIAPQ
FT                 PEKAPPDVNAEHITDDDEDADTALPSQPERVDCPAEATTRRSERERKLPGK
FT                 FLDFITGSRASTAAECSTGVSEDHDDATMAFALNAETFVENLPTTIDGLRR
FT                 RSDWQHWKKAIISEMESLQKNETWELVPKPPNKNIVDCKWVFKIKRDEAGN
FT                 VNRYKARLVAKGFSQRKGYDYDETYAPVAKGTTVRVLLAVANQMGYHLHQM
FT                 DVKTAFLNGQLKEEIFMRQPEGFESGDPSLVCHLKKSLYGLKQAPRSWNSE
FT                 FHNFVIQLGFQRSNLDSCLYWWSDGKIVVYLLLYVDDIILVSNQMDVIAEM
FT                 KKKLSTRFEMTDVGLLKMFLGLKIDRDQAKGTMKISQPKYVDDLLQRFGMA
FT                 NCKPAPTPLEPNLKLERREDEAVTSEPYRELIGCLTYLALSSRPDISAAVN
FT                 FFSRYQSAPTSEHWSHLKRILRYLKGTVNHGLAFRRNEGSAPLVGYADADW
FT                 GNGPADRRSISGNVFQVFDGTFSWMTRKQSSVALSSTEAEYVSLSHAVCEA
FT                 IWLRNLFLELGIKLDQPVVLHEDNQSCICIAQEPRDHKRMKHVDIRYNFIR
FT                 EKLQDGTFKIQNIPTNEQLADLFTKGLSRGPFEMLRSKLGLFG"
XX
SQ   Sequence 4207 BP; 1142 A; 949 C; 1240 G; 876 T; 0 other;
     ataggttatg ggcccagaac ggaagtagtt tatttgaaga aacgtttggt caagttctgc        60
     ggaagaagtc aagatgagcg acgaaaaact ctggctgttc aacggtgaaa acttcggcaa       120
     ctggaaattc aggattgaag tgctgatgga agacaggggc ttgctggagt gcctggaaac       180
     ggcaattgcg gatcaagagt acgctgagga gcttccggac gatactgctg aggagaggca       240
     gcggaagaag aagctactgg acgaacggat ggccaaggat cgacgatgca agaacctgct       300
     aattcaccgg attgcagagg atcagctcga gtatgccaag gaacaaaaga cggccaaaga       360
     catttgggac gagctgaaga acaacttcga acggattgga attgcaggca agttaatcct       420
     gaaaaagcag ttccaagagc tgcggctggc ggaaggtggc gacgtgaagg ctttcttgct       480
     ccggttcgag aagattctgc gcgagctaag gacggcggaa gtcaacatgc aggaggaaga       540
     cgtggtgtgt caactactgc tggcgcttcc cggatcctac ggagcgctta tcacggctct       600
     ggagagacga tacagccaca gcagcttacg ttggagtatg tgaaaaagcg gcttctggac       660
     gagcaggtga agcgactaaa ttcaagtcct gcaggtgagt cggaaaattc tggagattcg       720
     gcgttttctg gtaagaagct aggaatcaag tgcttcggct gcggcaagta cggtcacaaa       780
     cgagctgagt gtcccgaaaa ccgtcctgct gaagattcta gctcaactcg gctccgaaag       840
     aagaatggaa aattttcaag aaaaacaaag tttggagcga gcgttgccga ggaaatgacg       900
     ttcgttgcta cggaaaccat ggagtgtttg tctgttgcta ctgtgtcgaa gaaaaacgtc       960
     gactggatcc tggactcggg cgcgacggat cacatggtga agagcaagac tttctttgat      1020
     gagatgcatg cgttggacaa taaggtgcgt atagcggtgg caaaatctgg tcaggccgtt      1080
     ttcgcggagt atgcgggcac cgtgaaagtc aatatgctga ttgatggaag gaaagtaccg      1140
     gctgttgtca aggatgtgct ctacgtccca cagttggcat gcaacttgtt ctcggttcgg      1200
     cgcctggaag ataacggaat gatggtaaga atctctaacg gtacagtgaa ggttttgaag      1260
     aacggaagtg tggtcgcaac tggcagaaga gctggtcagc tgtacaagat ggacatcgag      1320
     ctacgagatg tggcttactc agcttctggt ggcgaatgcg aagctggtgc gatggcttcg      1380
     aagaaggacg ggttcgattt gtggcatcga cgattcggcc acttgggaac ggcaaacatg      1440
     aagaccctgt ggaagcacgg aatggtggaa acgaccacga aaatctcgga ctggccggaa      1500
     cggtgtgtct gtgaagtctg tctccaaggg aagcaatcaa ggcaaccatt cgaagacggt      1560
     ggagagcgac gagcgtctcg tccactggag atcatccatt cggacgtgtg tggtccgttt      1620
     acgcagaaga cgtgggacaa gaagcggtca ttcgtcacgt tcattgacga ctttagccat      1680
     ttcacggtcg tgtacctcct ggagtccaag gatgaggtgc aatcgaagtt tgaagaatac      1740
     tgtgcacggg tgacggcgtt ctttggaact cgagtgtccc gactgaggtg cgacaacggc      1800
     ggagaatata ctggaaaatc gttccgtaag tattgccgca ctcaagggat caacgtcgaa      1860
     gcaaccattc catacagccc acaacaaaac ggagtggctg agcggatgaa ccgcacgctg      1920
     ttggagaagg cccgttcgat ggtacacgaa gctggactgc acaaatccat gtggggcgag      1980
     gcggtgttga ctgctgccta tctatgcaac cggagcccta catctgcgct gaaagagaag      2040
     aagacaccgt atgagatatg gtatggacga aaacccaaca tcgacaaaat gcgagtcttc      2100
     ggttcggtgg cacatacctg ggtgccaaag gagaaacgtg ataagttgga ccccaaatcg      2160
     gagaagaatg tgatggttgg ttacactgcg aacggatata gaatctggga cccacgtaag      2220
     cggagagtta cggttgcgag agacgtggtg ttcgacgagc agaaagatgg ttccgttgct      2280
     gcgccgaata atgccaagca ggtgctgtgg cgtaacgacg atacagaaga ttgtgaagat      2340
     gaaccgggag ctccagtggt gggccaaccc aatattgccc cccagcctga aaaggcacca      2400
     ccagatgtga atgcagaaca cataactgac gacgacgagg atgccgacac cgcgctccct      2460
     tcgcaaccag aacgtgtcga ctgccctgca gaagcgacca cgaggcgcag cgaacgggag      2520
     cgcaaactcc ccggtaagtt ccttgatttt attaccggct ctcgagcatc tactgctgcg      2580
     gaatgttcta caggtgtttc tgaggaccat gacgatgcga cgatggcgtt tgcgttgaat      2640
     gctgagacgt tcgtggagaa cctgccgacc acgatcgatg ggttgcgacg gcgaagcgac      2700
     tggcaacact ggaagaaggc catcatcagc gagatggagt cgttgcagaa gaatgagacg      2760
     tgggagctcg ttccgaagcc acccaataag aacatcgtcg actgtaaatg ggtgttcaag      2820
     atcaagcgag atgaagctgg caacgtcaac cggtacaaag cccgcctggt cgcaaagggc      2880
     ttttcacaac ggaagggtta cgactacgac gagacgtacg cacctgtagc gaaggggacc      2940
     acggtgcgtg tgctgttggc ggtggcgaac cagatgggat accacctaca ccaaatggac      3000
     gtcaaaaccg cgttcctcaa tggacaactg aaggaggaga tattcatgcg acaacccgaa      3060
     ggattcgagt ctggtgatcc tagccttgtg tgtcacctga agaagtccct ctacggattg      3120
     aagcaggctc cccggagctg gaactcggag tttcacaact tcgtaatcca gctgggcttc      3180
     caacgttcca atctagatag ctgtctttat tggtggagcg atgggaagat cgttgtgtat      3240
     ctcctgctat atgtggacga cataattctg gtctcaaacc agatggacgt gatagccgaa      3300
     atgaagaaga aactttcaac aagatttgaa atgactgacg tcggcttatt gaagatgttc      3360
     ctcggcctca agatcgaccg agatcaagcg aaaggaacga tgaagatcag ccagccgaag      3420
     tacgttgacg acctcctgca gcggtttggc atggcgaatt gcaaacctgc accgacgcca      3480
     ctggaaccga acctgaagct agaacgccgc gaagatgaag cagtgacctc cgaaccatat      3540
     cgagagctga taggatgctt gacgtacctg gcactgtcgt caagaccgga tataagtgct      3600
     gcggtcaact tcttcagcag gtaccaatct gcaccgacaa gcgaacattg gagtcacctg      3660
     aagcgcattc tccgctactt gaagggtact gtgaaccacg gtctggcatt ccgaaggaac      3720
     gaaggatcgg cgccactagt tggatatgct gacgctgatt gggggaacgg cccggccgac      3780
     cgccggtcca tctcgggtaa cgtgtttcaa gtgtttgatg gtacattttc ctggatgact      3840
     cgcaagcaaa gcagcgttgc cctctcttca actgaagctg agtatgtttc gctcagtcac      3900
     gctgtgtgtg aagcaatctg gctgcgaaac cttttcctcg aactcggaat aaagctggac      3960
     caacccgtag tgctgcatga agacaatcag tcttgcatct gcattgccca ggagccacgt      4020
     gaccacaaaa ggatgaagca cgtggacatc cggtataatt tcattcgtga gaagctacaa      4080
     gatggtacgt tcaagatcca gaacattccg acaaatgagc agttggcaga cctgttcacc      4140
     aaaggattgt cacgtggacc attcgagatg ctacgaagta agctaggatt attcggttga      4200
     gcagggg                                                                4207
//
ID   Copia-7_AA-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   AAGE02017938;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_AA_;
KW   Copia-7_AA-I; Copia-7_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-127
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017938; Positions    5850    5724.
XX
SQ   Sequence 127 BP; 43 A; 29 C; 20 G; 35 T; 0 other;
     tgttggatgg caaccgaagg actacccata gcaacctaga ataacatatt gtagtaggct        60
     tagacattag agcaataaaa ttttcttcac ttccactatt actcccaaca taaccagacg       120
     tgtttca                                                                 127
//
ID   Copia-7_AG-I repbase;    DNA;    INV; 1896 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Copia-7_AG-I.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1896
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1458-1458 (2010).
XX
DR   [1] (Consensus)
XX
CC   Consensus sequence out of four sequences with a mean p-distance
CC   of 0,0083 and sd=0,0014, considering the whole alignment. The
CC   LTRs are 168 nucleotides long and are identical in all the
CC   sequences suggesting a recent transposition event.
CC   The consensus sequence has an ORF of 615 aa that contains no
CC   conserved regions.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..1847
FT                 /product="Copia-7_AG-I_1p"
FT                 /translation="KMQVRKCKRTIWYRNFFLTLPDSYDPLVTALENIQDK
FT                 DLSLEMVKHRLLGEESKRVDRVDYYVEENSTAFIGGSNQMKKFKGRCYRCG
FT                 KLGHMQKDCRSKMENRNANSVVAGKTVSFMVKPQCEVEEKEQAIHSFVIDS
FT                 GCSDHFINNIKYLQNIRKLKEPFIVDVAKDGVTLVGEYEGTVRGKTKEGVI
FT                 LEMKNVIYLPELRSNLVSVKKMTHAGIDVLFTREDGFEKALMKLEKDVIGV
FT                 AHMKQNLYELELQLETRRSANMCMTAVSTLKPRNEYFRFQATGMVMQNCMV
FT                 DGRDRKSTHFCDACREPYKKNQELAFISLDNDTCGSENRDVKFPFHEQRDN
FT                 DRFQQEGEMVGKDNAANGLQVHQKLVDIEENNEEYFEILSDKGIREKENGE
FT                 REEPITSKLSANVSHYNCEIRKKAIKGESLTSRPDFKVAFLHGKLPEAPPG
FT                 LLRQFLGLLQDVGLKVMTLIRTLPKLHTNKALEAG"
XX
SQ   Sequence 1896 BP; 626 A; 314 C; 484 G; 472 T; 0 other;
     ggttatgggc tcctctgtaa aggaaggtgc tggcattccc cagctgaatg gaacgaacta        60
     cggaaaatgg cgttttcgag ttcgtttgtt cttggaagct tcggaagttt gggaggcgct       120
     cgaagaagac gtgcctgagg cggtcggaga accgcggaac aagtttttgc gaatggaccg       180
     gaaggcaaaa tccttgctgg ttggatttgt tggagacgat tgtctagcca tagtcgaaga       240
     aaagggaaca gccaaggaaa tgtggaaagc ccttgaagac acttttgcga agaagtcggg       300
     ggcaagccag acgatcttgc gcaaacgact ggccacgtta cgcatgaagg aagggtgttc       360
     tatgcgaagt cattttgccg aattcgacga gctagtgcga cagttgaaaa atgcaggtgc       420
     gaaaatgcaa gagaacgatt tggtatcgca actttttttt aacgttgccg gatagctacg       480
     atcctcttgt gacagccctt gaaaatatcc aagataaaga cctctcatta gaaatggtga       540
     aacatcggtt actaggagaa gagtctaagc gagtcgacag ggtggactac tatgtcgaag       600
     aaaattcaac cgcttttatc ggtggaagta atcagatgaa gaaattcaaa ggaagatgtt       660
     accggtgtgg aaaattaggc cacatgcaaa aggattgccg atccaagatg gaaaacagaa       720
     atgctaactc tgttgtggca ggcaaaactg tgagtttcat ggtgaaacct cagtgtgaag       780
     tggaagaaaa agagcaagca atacattcat ttgtaatcga ttccggatgc agtgaccact       840
     tcatcaacaa catcaaatac cttcaaaaca ttcgaaaatt gaaagaaccg tttatcgttg       900
     atgttgccaa agacggtgta actttagtcg gagaatacga aggtaccgtg cgtggaaaaa       960
     cgaaagaagg cgttatttta gaaatgaaga atgttattta tttacctgag ttgagaagta      1020
     acttagtttc agtaaagaaa atgacgcatg ctggaatcga tgtgcttttc actcgtgaag      1080
     atggctttga aaaagcccta atgaagctag agaaggatgt aattggcgtt gctcatatga      1140
     aacaaaatct ttatgagcta gagttgcagt tagaaacgag acgatctgca aatatgtgta      1200
     tgacagcggt gagtacacta aagcctcgta atgaatattt tcgatttcaa gctacaggca      1260
     tggtgatgca aaactgtatg gtagacggtc gcgatcgaaa atcaacacat ttttgcgacg      1320
     catgccgaga accatataaa aaaaatcaag aattggcctt tatctcattg gataacgaca      1380
     cttgtggttc tgaaaatcga gatgtaaaat tcccttttca tgaacagcgg gacaatgacc      1440
     gttttcagca agagggggaa atggtcggaa aagataatgc tgccaacggt ttgcaagtgc      1500
     atcaaaagtt agtcgatatt gaagagaata atgaggaata ttttgaaata ttaagcgata      1560
     aaggaatacg tgaaaaagaa aatggcgaaa gggaagaacc gataacttca aaactcagcg      1620
     caaacgtaag tcattataat tgtgaaatta ggaagaaagc tatcaaaggt gaatcgttaa      1680
     catcaaggcc tgattttaaa gtagcatttc ttcatggaaa actgcctgaa gctcctcctg      1740
     gtttgttgag gcaattcttg ggcttgttac aggatgttgg attgaaagta atgacattga      1800
     ttcgaaccct tccgaagcta cataccaata aggcattaga agctggttga ttgaaagtct      1860
     tgaggaagaa acttgggatg aacgatcgag aggggg                                1896
//
ID   Copia-7_AG-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   01-SEP-2010 (Rel. 15.09, Created)
DT   01-SEP-2010 (Rel. 15.09, Last updated, Version 1)
XX
DE   Copia-7_AG-LTR.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-168
RA   Fernandez Medina R.D., Struchiner C.J. and Ribeiro J.M.C.;
RT   "Transposable elements from Anopheles gambiae.";
RL   Repbase Reports 10(9), 1459-1459 (2010).
XX
DR   [1] (Consensus)
XX
CC   LTR consensus sequence of Copia-7.
CC   The LTRs in all the sequences are identical.
XX
SQ   Sequence 168 BP; 64 A; 26 C; 32 G; 46 T; 0 other;
     tgtaaacgaa gtagccgcgt gtaatcgaag tagtctttaa tagatttggg aacgatcgtt        60
     tcattacaag ttagtcgcaa ataaaccatt gacgagaacg gtcgcattaa agagaaactt       120
     gttaaaataa aaaacttcca aagtatttca aagaacagag ttccttta                    168
//
ID   Copia-7_BTa-I repbase;    DNA;    INV; 4971 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4971
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 579-579 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~97% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(647..1387,1356..1799)
FT                 /product="Copia-7_BTa-I_1p"
FT                 /translation="MSYERSTNARLLEIRDVEKLKDANTYPLWKFQMKIAF
FT                 RAVGILDVVNGSIPKPRLKEDLSNAKDVQNWKRSDATAQRVITNTMDKIIL
FT                 VHLMNCQTAKEMWNIIKELYERDTEEQRCALLEEFFNYKYIQGTDIMTHIS
FT                 NIENLYTRLNAIQAKLSKDMLKTKILSTLPPNYSFFQSAWDATPSDKRTLS
FT                 LLKSRLLSEENRKQENKSEGVAFSAAEKRCYGCNGDHLLRFCPNKVGTLKR
FT                 EIAKQWGRSNEKSQSNGKFCTYCKKRNHDISVCRKLKRKNQEQGGDKKGKW
FT                 CSLCKMSNHTDSQCFKQKKNGDKSEQGVAFMGYDENLTQENVGQWILDSGA
FT                 SSHMCANKEYSSEMSECNVKIAVAKQDHSMLATGIGKIIFKTFELNDVYYI
FT                 P"
FT   CDS           join(1803..2624,2591..3079,2962..4656)
FT                 /product="Copia-7_BTa-I_2p"
FT                 /translation="LSRNLISINAITANGGQVKFNKDKEIIKKHGRYIFHG
FT                 VKTELGLFIATIDPFKNEHALVAQKCNSVEKRSELAQQWHKKLGHIGNTYL
FT                 IKLINMAEGLNLQERDVKSEKLQDCDVCIKSKLCRTPFGDGRQKADRILGI
FT                 IHSDVCGTISPSTYDGYNYYVSFTGGVSGFVMLYLIKTKDEVFAKFKECVA
FT                 EVENTHNAKVSMLRCDNGGEYDNTAMKQWCKMKGIKLDFTPPYTPQLNPVS
FT                 ERYNKTVWEKIRALMYKSGLDKKFWGLAAHATFEILGISCACYILNRCPKR
FT                 GMKITPYEAWTNRVPDLSNLQIFGSQAYAKNLHYLKKLDERAQEYIFVGYA
FT                 PNAYRLWCEESEKIIVSRDVVFTNKHKHKQNSDGTKSVKIPIFVSNDDESG
FT                 TMAEDEGGEVPEIPAEVKKMRMKKMRVKKMKRKSKRSRSQGAKGRGGRSTR
FT                 DTSGSEENENEENESEENEEEIKTITLAGREINHPDWYGNPIPSDCLDLML
FT                 QSAMLTYAQAVKGPDSKEWLKAINEEKNSLKENETWKLVPRFQAAGKGILN
FT                 STWILKEKEDGHKKARLVIRGDQKIPGIDFEETYSPVVSNNALLIILALAG
FT                 DNAYNIMTFDVKTAFLYSQLDKEIYMFLPEVYEKNNEFICKLQKSLYGLRQ
FT                 ASRQWNMKFVNTLKGLGFTEVICERCVFVHKSHGIILAIHVDDGFLAYRDE
FT                 RKAKAIMTSLEKEFKMTANYDPKSFLGVEIVKNSVGLSISQNDYASQILQK
FT                 FNMQDSKPVSTPAVKTSRTEREKETAEEVNFPYRQAVGNLLYLSAKTRPDI
FT                 AYAVNYVSRFMENPTKLDVTNVKRIFRYIRGNSVASIMYKNGNDEELHAYC
FT                 YSDFAEDEIDRKSTSGYVIMYKGETIAWATRKQQITVTSSTEAEFVSACAM
FT                 VKELVYLKSFIENLTGKTVKATVYSDNQGAIQLIKNGIFNRRSKHIKVKFH
FT                 YVCEVYQEKRIEIKYIPTDQQLADVFTKPLGSTKFETFKKQFLTRFK"
XX
SQ   Sequence 4971 BP; 1731 A; 851 C; 1090 G; 1299 T; 0 other;
     ggttatggga gcccagacga cagccgaaaa cttaaacatt cgtgttctga aagtgcgacc        60
     gaaaagtgtg cgaaaaattt aaacattcgt gttctgaaag tgcgatcgaa aagtgtgcga       120
     aaatgagctg gttcgacaac gaaaacgaaa taacgataac taatgatctt gatatgcatg       180
     acgtggtgca ttacgtgtta attttcggaa tgatggtgat aattttcata ttttacttag       240
     gaaacaagtg caaaaaaatg agagggaaca tcgaggcagt acgaaacgct ttgcgactgc       300
     acgcatggcg aggtcaaatt ttcgtgaagt gagttccacg cgattttcca gttcttttcg       360
     cgaagcaacc cgcgtaaaca tttttttgcg aagtgaagcc gcaataaaca ttttttttct       420
     tttcgcaaag caacccgcgt aaacattttt ttgcgaagtg aagccgcaat aaacattctt       480
     ttcgcgaagc aacccgcgtg aacatttttt tgcgaagtga agcagcaata aacatttttt       540
     ttagctctct cgctttctct cttttgcgaa gtgaatccgc agtaaacatt cagtgcatta       600
     ttatctcgct ttctctctct tgcgaagtga atctgcaatt gatacgatgt cgtacgagag       660
     aagcaccaac gcacgtcttc tagagatccg cgacgtggag aaactgaagg atgccaacac       720
     atatccccta tggaagttcc aaatgaagat tgcattccga gcagtgggaa ttcttgatgt       780
     agtgaacgga agtataccaa agcctcgttt gaaggaagac ttatccaacg cgaaagatgt       840
     tcaaaactgg aaaaggtctg atgcaacagc tcaacgggtc ataacaaaca caatggacaa       900
     gattattctg gtgcacttga tgaactgcca aacagcaaag gagatgtgga acattatcaa       960
     ggagttatac gagagggaca ctgaggaaca gcgttgtgcc ctccttgagg aatttttcaa      1020
     ctataaatat atacaaggta cagacattat gactcatatc agtaatattg aaaaccttta      1080
     taccagacta aatgcgattc aagctaaact ttcaaaagac atgttaaaaa caaagattct      1140
     atccacattg ccgcccaatt acagtttttt ccagtccgcg tgggatgcaa ctcccagcga      1200
     caaacgcaca ttatccctgc taaaatctcg attactttcg gaagagaaca ggaagcaaga      1260
     gaacaagtcc gaaggggttg cattcagcgc tgctgaaaaa cgctgttatg gctgcaatgg      1320
     ggatcactta ttacgttttt gtccaaataa agtagggacg ctcaaacgag aaatcgcaaa      1380
     gcaatggtaa attttgtaca tattgcaaaa aacgtaatca tgatatttca gtctgtagaa      1440
     agctaaaaag aaagaatcag gagcaagggg gtgacaaaaa aggaaaatgg tgctctcttt      1500
     gcaaaatgag caatcataca gatagccaat gctttaaaca aaagaaaaac ggtgacaagt      1560
     ccgagcaagg ggttgcattt atgggatacg atgagaattt gacgcaagaa aatgttggac      1620
     agtggattct tgacagtggc gctagctccc acatgtgtgc aaacaaagaa tattcctctg      1680
     aaatgtcaga atgtaacgtt aaaattgccg tagctaaaca agatcactct atgttagcta      1740
     caggaattgg taagataata ttcaagacct ttgaattgaa tgatgtatat tatatcccct      1800
     aactgtcacg aaatctgatt tccataaatg caattaccgc aaatggagga caagttaaat      1860
     ttaacaaaga taaggaaatt atcaagaaac atggaagata catatttcac ggtgtcaaaa      1920
     ctgaactggg tttgtttatt gccaccattg atcccttcaa aaatgagcat gctttagttg      1980
     cacaaaaatg taatagtgtt gagaaacgaa gtgagttagc gcaacaatgg cacaaaaagt      2040
     tggggcacat tggaaatact tacttaataa aattgataaa catggccgaa ggcttaaact      2100
     tacaagaaag agatgtaaaa agtgaaaaat tgcaagattg tgatgtatgt attaaatcta      2160
     aactctgtcg cacacccttc ggggatggac gacagaaagc cgatcgtatt ttgggcatca      2220
     tccactcaga cgtatgtggt acaatcagcc cgagtactta cgatggttat aattattatg      2280
     ttagctttac tggtggagtt tctggttttg tgatgttata cttaataaaa actaaggatg      2340
     aagtatttgc caagttcaaa gaatgcgtag ctgaggtaga gaacactcat aatgccaaag      2400
     tttctatgct aaggtgcgac aacgggggtg agtatgataa tactgctatg aagcaatggt      2460
     gtaaaatgaa aggtataaaa ttagatttca ctcccccgta cactcctcaa ctaaatccag      2520
     taagtgagag atacaacaag actgtttggg aaaagataag agccctcatg tacaaaagtg      2580
     gtttagataa gaaattctgg ggattagctg cgcatgctac attttaaatc gctgtccaaa      2640
     aagggggatg aaaataaccc cgtatgaagc atggacgaat agagtgccgg acttaagtaa      2700
     cttgcaaatt tttggctctc aagcgtacgc caagaatttg cactatctaa aaaaactaga      2760
     cgagcgagct caagaataca tttttgtggg atatgcgcca aatgcgtata gactttggtg      2820
     tgaggaaagc gagaaaatca tagtgagccg tgacgtagtt ttcacaaaca aacataagca      2880
     taagcaaaac tctgatggga cgaagagtgt aaaaatccca atatttgtat ccaatgatga      2940
     tgaaagtggg acaatggctg aggacgaggg gggagaagta ccagagatac cagcggaagt      3000
     gaagaaaatg agaatgaaga aaatgagagt gaagaaaatg aagaggaaat caaaacgatc      3060
     acgctcgcag ggcgcgaaat aaatcatcct gactggtatg gtaacccaat ccccagcgat      3120
     tgtctcgact tgatgttgca aagtgcgatg ctcacttacg cacaagcggt gaaagggcca      3180
     gattccaagg aatggctcaa agccataaat gaagagaaaa atagtttaaa agagaatgaa      3240
     acttggaaac tggtgccacg ttttcaagcc gcaggcaaag gcattttaaa cagtacctgg      3300
     attttaaaag aaaaagagga cggccataaa aaggcaagat tggtcataag aggtgatcaa      3360
     aaaatcccag gaattgattt tgaggagaca tatagcccag tggtaagcaa caacgcactt      3420
     ctcattattc tagctcttgc tggcgataac gcatacaata ttatgacttt cgatgttaaa      3480
     acagcgtttt tgtacagtca acttgacaaa gaaatataca tgttcttacc cgaggtatat      3540
     gagaagaata acgaatttat atgtaaattg caaaagtctc tgtatgggct acgtcaagct      3600
     tcgcgtcaat ggaacatgaa atttgttaat actctaaaag gtttaggctt cacagaagta      3660
     atttgtgaac gctgtgtgtt tgttcataaa agtcatggca taatattagc gatacatgtt      3720
     gatgatggct tcttggctta cagagatgag aggaaggcga aagccataat gacaagcctt      3780
     gaaaaagaat tcaaaatgac ggccaactat gacccaaaga gtttcttagg agtagaaata      3840
     gttaagaata gcgtaggttt gtcgataagt caaaatgatt atgcctccca aattttgcaa      3900
     aaatttaaca tgcaggattc taaaccagtt tcaacacctg cagtaaagac aagtagaacg      3960
     gagagagaga aggaaactgc tgaagaagtc aactttcctt accgtcaagc ggtgggtaat      4020
     ttgctatatt tgtcagcaaa aaccagacct gatattgctt atgcagttaa ttatgtgagc      4080
     aggttcatgg aaaatccgac gaagttggat gtgacaaatg tgaaacgtat ctttcgttat      4140
     atacgaggaa acagcgttgc ctcaattatg tataagaatg gtaatgacga agagctgcat      4200
     gcttattgtt actctgattt cgctgaggat gagattgaca gaaaaagtac aagtggctac      4260
     gtcataatgt acaagggaga aactatagct tgggccacta gaaaacaaca gattacagta      4320
     acttcctcca cggaagctga atttgtcagt gcttgcgcaa tggttaaaga acttgtctat      4380
     ttgaaatcat ttatcgaaaa cctcactggt aaaacggtca aggcaactgt ttattccgac      4440
     aatcaaggag caattcagct aattaaaaat ggtattttta atcggaggtc aaaacatatc      4500
     aaagttaaat ttcactacgt ttgcgaagta tatcaagaaa agagaataga gataaaatat      4560
     atacccactg accaacagct ggcagacgta ttcacaaagc cactggggtc aaccaaattt      4620
     gaaacattca agaaacaatt tttgactaga tttaagtgat gtcttgaaat attcaagaga      4680
     caattttttt aatagattta agtgatgtct gagatcacat gagacggtgt tggaaacctc      4740
     gaccaaattt gaaatgttca agaatcaatt ttttttacac caaattcaag tcttgtgtaa      4800
     gatccctatt gtaaatgtaa tcattatttc tctttcagga ggagacttga cataaatgta      4860
     aaattaacat taagtaacat taagtaaact tgtaagagat gtgctttagt tttgataggc      4920
     ctcggtggag gacagggcat ttcgttaggc agtgaacgaa ttgagggggt g               4971
//
ID   Copia-7_BTa-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-223
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 604-604 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~97% identical to each other.
XX
SQ   Sequence 223 BP; 70 A; 56 C; 40 G; 57 T; 0 other;
     tgacggaact aataatgcaa ttcattcacg ccaatcgcgc aacattgagc tgcaatgcaa        60
     gcgcagcatt ttggaaccgc atccgtcgga cttgcagtgc gcagttagtc agtcgagtaa       120
     agcatgccaa gccatctcca ataagaatgt aattcaacaa taaatttcat aatcttgatc       180
     cgtgatccac ttttcactcg gtattttcaa aacaacctcg aca                         223
//
ID   Copia-7_CFl-I repbase;    DNA;    INV; 4156 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Copia-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4156
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1011-1011 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2116..4110
FT                 /product="Copia-7_CFl-I_2p"
FT                 /translation="MEKIYKPNLRKLRVFECVAIIFTFQRNTIVINGKFES
FT                 RSKRCRLMGYCANGYRLWCPESSKILQGRDVIFNELKFTSESEDFYDDFKS
FT                 TEEAARNQESPNSGGEQDISSDEESEYFDNADEARILRKSSRQRNKPKYLN
FT                 DYTVLALSAESFVEDIPQHFDDIQGRDDERQWMDAINEEITSLVENKTWDL
FT                 IPLPPERKVIDNRWVFKIKRDKDGNIDKYKARLVVKGCSQRRGLDYEETYA
FT                 PVARLTTVRTLLSIVNQLRLKTRQLDVKNAFLHGTIDEEIYMKLPQGFTQD
FT                 NGLVCKLNRSLYGLKQAPRAWNARFNEFILTLGFKRSERDHCLYVAISQRC
FT                 RLYLLLYVDDIIIAGQDEIQIQEIVNALKNEFAMTDIGEIESFLGIKIEQT
FT                 SRGLFLSQRAYMEKMLTRFGMTECNSSKSPMEANPEKQENDDGEVIIEIKP
FT                 YRELVGCLMFLMLNTRPDISVTVNYYSRFQNNAKLTHWKGLKRVLRYIRGT
FT                 LDYGLLFKRGLDPGTPLQVYVDANWATDNDRKSTTGFLLQVFGSTVAWSTK
FT                 KQTGITLSSTEAEYVALATALTEAIWLKGLLEDFNVNSAYPIAVFEDNQSV
FT                 IHLLSRWEHRRLKHVDVKYNFVRNMYQSKEINVHYVNTKEQTADILTKSLT
FT                 GDQFVKLRSYIGVCKN"
FT   CDS           join(368..892,832..1992)
FT                 /product="Copia-7_CFl-I_1p"
FT                 /translation="MWKALSDSFERTGVSSQLRLRKILLTMRYASTESMAS
FT                 HFLKFDKLVRELKSTGAKIEEIDIVCHLLLTMPEEYDMVVTALETMSSGQL
FT                 TLSFVKTRLLDEEAKRGGSTDLVSGSSSTVFSATTNKRHGNRNANSTGNRN
FT                 ANSTNNKRSVNSNGNSAGTSLNIDVTGLIIDVTTAARGNEFEYRCHRFDYR
FT                 CHHCGIVGHKRSECRKLKNEDKNSETANAAVDDNCNKNQKAFVFFSNGSDS
FT                 SVSNVNFVLDSGSTEHLSTEKTKLINVRKLTTPINIRVAKSGHVLTANKIG
FT                 DLRVRARVNGKTSDIVITGILSVAGLECNLLSVRKLEMNGFSVIFEDGKGI
FT                 IKKGDKVAAIARRQDKLYELCVESVTETANVCNVSETTQLWHRRLGHLSSS
FT                 GLKKLVSMADGIDVKELETSLELCETCVSREGKQTRLPHQSHRIRAKRPLE
FT                 LVHSDLCGPMDVTSFDGKRYLLTFIDDFTHFTVAYTLKAKSEVLKYFKMFQ
FT                 SLAETHFNFKVSRFRCDNGREYLSTEIRQHFEDCGIQFELTIPYTPQQNGV
FT                 AERMNRTIIEKAPVV"
XX
SQ   Sequence 4156 BP; 1355 A; 803 C; 952 G; 1045 T; 1 other;
     ggttatgggc ccagagttgc gtgtgtgaag aaggaattta gtcgcggaat gaactttgta        60
     agtcacgagt cggaaaagtt ttgagaaaca acgcgtgtgc gaaagtgcga caaaaatggc       120
     ggacgatgaa aagtacaaag tgccactctt tgaagcaact acagtaactg gaagtttcgt       180
     atgcagattc tacttgagga acatctcttt gatctaatcg gtgaagagct taatacatta       240
     atagcaaagc taccggcggc aaccgcagcc gctcctgtct tgaaaagaaa tgacaaaaaa       300
     tgtaagtcgc ttattactca acgtatctca gatagtcatc tcgacgtgaa ggagaaagat       360
     acagcgtatg tggaaggctc tttcggatag tttcgagcgt acaggcgtct cgagccaact       420
     tcgtcttaga aaaatactct tgaccatgcg gtacgcgtca acggaatcca tggcatctca       480
     ttttttgaag ttcgacaagc tcgttcggga gttgaaatcg accggtgcta agatagaaga       540
     aattgatatc gtgtgccatc tattgttaac gatgcccgaa gagtacgata tggtcgtaac       600
     agccctcgaa acaatgtcaa gtggacagtt aactcttagc ttcgtcaaaa cgaggttatt       660
     ggatgaagaa gcgaagcgag gtggcagcac agatttagta agtggaagct cgtctaccgt       720
     gttctcagct acgacgaata agcgccacgg aaatcggaac gcgaactcaa ccggaaatcg       780
     gaacgcgaac tcaaccaaca ataaacggag tgttaattcg aacgggaata gcgcgggaac       840
     gagtttgaat atagatgtca ccggtttgat tatagatgtc accactgcgg catagttgga       900
     cacaaacggt ccgagtgtcg gaaattgaaa aacgaagata agaattcgga aacggcgaat       960
     gccgcggttg atgataactg taacaaaaat caaaaggcct ttgtgttttt ctcaaatgga      1020
     agtgacagta gtgtgtcaaa cgtaaatttt gttttagatt ccggatctac tgagcatttg      1080
     tcaacggaaa agacaaaatt aattaacgtg cggaaattaa ctacgccgat aaatatacgc      1140
     gttgcaaagt cgggtcacgt gctgactgca aataaaatcg gagacttaag agtgcgcgcg      1200
     cgagtaaacg ggaaaactag tgacattgta ataactggaa tcttatcggt agcgggactc      1260
     gaatgtaatc ttctctcagt tcgtaaactt gaaatgaatg gtttttcagt aatttttgaa      1320
     gacggtaaag gaatcattaa gaaaggggac aaagtcgccg caatcgcgcg tcgtcaagac      1380
     aagctgtatg aactatgtgt tgaaagcgta acggaaaccg cgaatgtctg caatgtcagt      1440
     gaaacaacac aactgtggca tcgtcgctta ggacatctga gcagctccgg attgaagaaa      1500
     ctggtgagca tggcagacgg aatagatgtg aaggaattgg agacttcatt ggagctctgc      1560
     gaaacctgtg tttcgcggga gggcaagcag actcgcctcc ctcaccaatc tcaccgcatc      1620
     agagcaaagc gtcctctcga gctggttcat agcgatcttt gtggtccaat ggacgttaca      1680
     tcctttgacg gaaaaagata tttgcttact tttattgatg acttcactca ttttactgtg      1740
     gcgtacacat tgaaagccaa atcagaagtg ctcaaatatt ttaaaatgtt ccaatcattg      1800
     gcagaaactc attttaattt caaagtaagc agattcaggt gtgacaatgg aagggaatac      1860
     ctctcgactg aaattcgtca acatttcgag gactgcggaa tacaattcga actcacgatt      1920
     ccctatacgc cacaacagaa cggagtagcg gagaggatga accgaacaat aatcgaaaag      1980
     gcgcccgttg tatgattttg aattcaaaaa tgagtaacga ttttttggtc cgaggctgta      2040
     atagcggctg tttacttaat caatcgatgc ccaacgaacg ctccgtgaaa ggcaagctgc      2100
     cagcagaact ctggtatgga gaaaatatat aaacccaatc ttcggaaact gagggttttt      2160
     gaatgcgttg caatcatctt cacattccaa aggaacacta tagtgatcaa cggaaaattc      2220
     gaatcacgtt caaaacgctg cagactaatg ggttattgtg cgaacggata tcgactgtgg      2280
     tgtcccgaaa gtagtaaaat attacaaggt cgagacgtta tttttaatga gttaaagttt      2340
     acttccgagt ctgaagattt ttatgatgat tttaagtcta cagaagaagc agcaaggaat      2400
     caagagtctc ccaattcagg cggagaacaa gatatctcga gtgatgaaga atccgagtac      2460
     ttcgataatg ctgatgaagc aaggattttg aggaagagct cacgacagag aaacaagccm      2520
     aagtatttaa atgactacac tgtcttggct ttaagcgcag aatcctttgt cgaagatatt      2580
     ccacaacatt ttgacgacat acaaggacga gatgatgaaa ggcagtggat ggatgcgata      2640
     aatgaagaaa ttacatctct tgtcgaaaac aaaacctggg acttaatacc attgcctcct      2700
     gaaagaaagg tcatcgataa tagatgggtt ttcaagataa aaagggataa agacggaaat      2760
     atcgacaaat acaaggcacg tctggtagtg aaaggatgct ctcaacgaag aggcctggat      2820
     tacgaagaaa catatgcgcc agttgcgcgt ctcactacgg tgcgaaccct tctatcgata      2880
     gtcaaccaac tcaggctaaa aactagacag ctagacgtta aaaacgcttt tctacacgga      2940
     actattgatg aagaaatata catgaagtta cctcaaggat tcacccaaga taatggcctc      3000
     gtatgtaagt tgaatcgttc cttatacgga ctgaaacaag ctccacgagc atggaatgct      3060
     cgattcaacg agttcatctt gaccctagga ttcaaaagat cagaacgaga tcactgtctc      3120
     tatgtagcaa tatcccaaag gtgtcggctg tatctactgc tttatgtcga tgatattatc      3180
     attgcaggcc aagatgaaat ccagattcaa gagattgtta atgctcttaa aaatgaattc      3240
     gctatgacgg acattggcga aattgaaagt ttcctcggaa taaaaatcga gcaaacatca      3300
     agaggcctat ttttgagcca gagagcatat atggaaaaaa tgctcactcg ctttggaatg      3360
     acggagtgca attcttccaa atcacccatg gaagcaaatc ctgaaaaaca agaaaacgac      3420
     gacggagaag tcataatcga gataaaacca tacagagagc tcgttggatg tctgatgttt      3480
     cttatgctca acacacgtcc tgacataagt gttactgtaa actattacag tcgtttccag      3540
     aacaatgcga aattaactca ttggaaaggc cttaaacgag ttcttcgata tatcagaggc      3600
     actctcgact atggactgct gttcaaacga ggcttagatc caggaacacc actccaagtc      3660
     tacgtagatg caaattgggc tacagacaat gatcgcaagt caactactgg ctttctactt      3720
     caggtcttcg gctctacggt agcttggtca acgaagaagc aaactggaat caccctctcg      3780
     tctactgaag cagaatatgt tgctttggca acagctttga cggaagcaat atggctaaaa      3840
     ggacttttag aggactttaa tgtgaatagt gcctatccca ttgcagtgtt tgaggacaat      3900
     caatctgtga ttcatctgtt aagccgatgg gaacatcgta gattaaaaca tgttgatgtt      3960
     aaatacaatt tcgttagaaa catgtaccaa agcaaagaaa tcaacgtgca ttacgtaaat      4020
     accaaagagc aaactgccga tatacttacg aaaagtctca caggagacca atttgttaag      4080
     cttcgttctt atattggtgt ttgcaaaaat taagctatat ttacatttat gttacggctc      4140
     atacattgag gcggag                                                      4156
//
ID   Copia-7_CFl-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Copia LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-196
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1012-1012 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 196 BP; 52 A; 43 C; 21 G; 80 T; 0 other;
     tgttagattg agcaatgtat aacctctctc tctacactat gtattctatg ttctaaattc        60
     tagtttcgtt tcttatatat tcttcttgct tcatgactct actcgtacag ttactggata       120
     ttaaaattac agttcaatga atctgtgata aaacttattt cgtccactcc ttatcctcgc       180
     tactctaaca tcatca                                                       196
//
ID   Copia-7_CQ-I repbase;    DNA;    INV; 2617 BP.
XX
AC   AAWU01003031;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_CQ_;
KW   Copia-7_CQ-LTR; Copia-7_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2617
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 329-329 (2011).
XX
DR   Genome; AAWU01003031; Positions   10959    8343.
XX
CC   'AAAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..2607
FT                 /product="Copia-7_CQ-I_1p"
FT                 /translation="MDRIGVVKLNGTNYCSWKRKVEFLLIRDDLWRYVVGT
FT                 KPVPRRAAVGSGSDGAAGADQAVLNAAEIEAWDNGDQRARATIGLLMEDTQ
FT                 LPLIKNATTAKLCWNALKDHFETVTLTSKVALLKRLCGMQYSEGEDIQQHV
FT                 QQMEEIFERLAMAGQELDEDLCVAMILRSLPSSFNTLTTALEARSDEELTL
FT                 ELVKMKLVDEVAKSGTRGAGESVLKVDHQKRKMVLICFFCKKPGHKEKFCR
FT                 AKNGESSQLEAEPDLPQAKTAHEDAKENFSFLTLDQKSGRDVWIIDSGATS
FT                 HMCFNPDCFVSMDRSVKQDVYLADGKKTISEGVGSCKLIWESPEGKRNDVV
FT                 LSDVMYVPKFETSIISVKKLTACGAKVDFDASGCRILKNNKVIGSAAMAGG
FT                 LYQMRPVREALWRNGVSERKSRSARSIDPETHEWTISRHCHFMTHQEVRET
FT                 EPSQGSIVLYPFSEVFPKECVADDVPVVLVPDDEHDGGEDPAGAVNDGEEN
FT                 ADDPIEADSSDFEVEVSGDGWNDTDDVDDALSPEDVEIRTAGRQEELQDGR
FT                 SVCRTTQGVLQCRDLVDPIQEQWEPCTLADVMECSDREKWLRAFKEEIQFL
FT                 HENSVRFETGAMLPGDVYFLEKSCYGLEQAGRVWNQQISVVLRNLEYQPSE
FT                 ADPCLFVRKKADNRSFDGSQNGRFWLDQNAYIRTITVRIGQEDAKLSRIPI
FT                 VPGCPKRQQKEEESLPRKNDYVSALLYVAVNTQPDIAISAFTLGRKRSNRI
FT                 ETGKTDAERTQRYPNATEELELGGTGRRSSGPSRKRGAVGDLPEVAIADEA
FT                 NAERGRRPEPLRFLMVAAAEDLACEAVEGVEEFQTNAA"
XX
SQ   Sequence 2617 BP; 622 A; 615 C; 852 G; 528 T; 0 other;
     ggttatgggc ctgcacctgt aaccaggcga cgaaacaaac atcaagaagt tttttcacga        60
     agcaaatttt caagaccccc actgaagatg gaccggattg gagtggtgaa gctaaacgga       120
     accaactact gcagctggaa gcggaaggtg gagttcctgc tcattcggga cgatttgtgg       180
     cggtacgtag tcggaacgaa gccggttcca cggcgagcgg ctgtcggttc cggatcggat       240
     ggtgctgctg gcgcggacca agccgtgctc aacgcggcgg agattgaagc ttgggacaac       300
     ggcgaccaga gggcgcgggc cacgatcggg ctgctgatgg aggacaccca gttgccgctc       360
     atcaagaatg cgacgacggc caagctctgc tggaacgccc tgaaggacca ctttgagacg       420
     gtcaccctga cgtctaaggt ggctctgctg aagcgattgt gcgggatgca atactcggaa       480
     ggagaggaca tccagcagca tgtccagcag atggaagaaa ttttcgagag gctggcgatg       540
     gccggtcaag agttagacga ggacctgtgt gtggccatga tcctgcggag tctgccaagc       600
     tcgttcaaca cgcttacgac ggctttggag gcgaggtccg acgaggaatt gactctggag       660
     ctggtcaaaa tgaaactggt ggacgaggtg gccaaaagtg gaactcgcgg agccggcgaa       720
     tctgtcctca aggttgacca ccagaagcgc aagatggtgc tgatctgttt tttctgcaag       780
     aagccgggcc acaaggagaa gttttgtcga gcgaaaaacg gtgagtcgag tcagttggag       840
     gccgagccgg acctgcccca agcgaagacg gctcacgagg acgccaagga gaatttttcg       900
     ttcttgacgc tggatcagaa aagcggccgt gacgtgtgga ttatcgactc gggagctacg       960
     tcccacatgt gcttcaatcc agattgtttc gtgtcgatgg atcggagcgt gaagcaggac      1020
     gtttaccttg cggacggcaa gaagacgatc tcggagggtg ttggctcatg taagttgatc      1080
     tgggagtctc cggagggcaa acgaaacgac gttgtcctgt ccgatgtgat gtacgtgccc      1140
     aagttcgaga ccagcatcat ctctgtgaag aagctgactg cctgcggggc caaggtcgat      1200
     ttcgatgcga gcggatgccg gattctcaag aacaacaagg tgattggatc cgcggcgatg      1260
     gccggcgggc tctaccagat gcggccggtt cgtgaagcgc tgtggcggaa tggagtctcg      1320
     gagcgcaaga gtcgctcggc tcgttccatc gatccggaga cgcacgagtg gaccatcagc      1380
     cgacattgtc attttatgac acatcaggag gttcgggaaa ccgaaccttc gcagggaagt      1440
     atcgttcttt atccattttc tgaagtcttc ccgaaagaat gtgtggctga tgacgtgccc      1500
     gttgttctag tgcccgatga cgaacacgat ggcggtgagg atcctgccgg agcggtcaac      1560
     gatggcgagg agaatgctga tgacccgatc gaggcagact ccagcgattt cgaggtggag      1620
     gtttccggcg acggatggaa tgatacggac gacgttgatg acgcgttgtc gcccgaagac      1680
     gtcgagatcc ggactgcagg cagacaggag gagttgcaag atgggcggag tgtttgtcgt      1740
     acaactcaag gtgtcctgca atgtcgggac ctggttgacc ctatccagga gcaatgggag      1800
     ccctgtacgt tagctgatgt gatggagtgc tcggatcgcg agaagtggtt gcgtgctttt      1860
     aaggaggaga tccagttcct tcacgagaac tcggtcagat ttgagaccgg cgcgatgcta      1920
     ccgggcgatg tctactttct tgagaaaagc tgttacgggc tggagcaggc gggacgcgtc      1980
     tggaaccagc agatttctgt cgtgctgcga aacttggagt accagccgtc agaagcggac      2040
     ccctgtttgt tcgtgaggaa gaaagccgac aatagatcgt tcgatggttc gcagaacgga      2100
     cggttctggc tggaccaaaa cgcgtacatc cgtacgatta ctgtgaggat tggtcaagaa      2160
     gatgccaagc tctcgcgtat tccgattgtt ccaggttgcc cgaaacgcca gcaaaaggag      2220
     gaggaatcgc tgccccggaa gaacgactac gttagtgctt tgctgtacgt tgcggttaac      2280
     acacagcctg atatcgcgat cagtgcgttc actctgggac gcaagaggag caaccggatt      2340
     gagacgggta agaccgacgc tgagcggacg cagcggtatc cgaacgccac ggaagaattg      2400
     gagctcggag gaacaggtcg acgatcatca ggaccaagcc gaaaacgtgg cgcagtcgga      2460
     gacctgccag aagttgctat agcggatgaa gctaatgccg aacgtgggag acgaccagag      2520
     ccgctccggt tcctgatggt cgctgctgct gaagatctag cttgtgaagc tgttgaagga      2580
     gttgaagagt tccaaaccaa cgcagcttga ggaggag                               2617
//
ID   Copia-7_CQ-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   AAWU01003031;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_CQ_;
KW   Copia-7_CQ-I; Copia-7_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-130
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 330-330 (2011).
XX
DR   Genome; AAWU01003031; Positions    8342    8213.
XX
SQ   Sequence 130 BP; 33 A; 27 C; 25 G; 45 T; 0 other;
     tgttggagtg cagcaagcct tgagtttggg acagatcgta gttaacctta tttgttaaat        60
     cagtttgaat aaacattctc tatctgaact tcttagaaac cagtcgcctg atttctttcg       120
     ctctccgaca                                                              130
//
ID   Copia-7_DAn-I repbase;    DNA;    INV; 4167 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_DAn_;
KW   Copia-7_DAn-LTR; Copia-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4167
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 303-303 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1507-2037] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..4122
FT                 /product="Copia-7_DAn-I_1p"
FT                 /translation="MSVSLQIEKLGDNNYDMWRMVMRSVLITSDLWDIVSG
FT                 KLKRPTDSTDSAVWYNIDQKALASIILNIKPSQLMHIKSCRTSSEAWLKLK
FT                 EIYMPVGPVRKVQLYQKLLRLNMSQGGNVAEYVNSFVEITDKLAELDININ
FT                 DELKVIMMLTSLPNNFENFVVAIETRDKLPSFENVKLKLLEEGARREERDE
FT                 RDRTNETVYSHVHAKNHEDQRKIDRRDKIQKNRKKNTDKGDDRDHARIPFE
FT                 GKCYNCKKYGHRASECRSKPKNERDKEQQSNNCLMHSQSGVVSQKFDTWCV
FT                 DSGATSHMCCVKSMFKTLKSKKSIIMLADKKYIESPGIGTVTFKIKGIDIE
FT                 LRDVLYVPDLQMNFLSVCKAAEWENFITFGHNEAVVKNKHGKTMLTAVRDK
FT                 NLYTFKTKMQSNAVYMLNENAIKWHNRFGHLNFQSLQKLENDKQVTGMNIK
FT                 NISVNINCDTCNKAKICAKPFPQKANRSTKELLELIHTDVCGPMNSKSLGG
FT                 NRYFVTFIDDYSRKIHIYFMHTKNEVFNKFKSFKTYVECQTNKRIKCLQSD
FT                 NGREYINRDFENYLNECGIKRQLTIPYTPQQNGVAERANRTIIEMARSLIT
FT                 HAKIGEFLWAEAVQTAAYIRNRCPTRALDGCTPFEIWYKRKPSVKHFRIFG
FT                 SKVFALDKTVKNKLQARGKEYVFVGYSHTAKAYRLYDKDKRTIVERRDVQF
FT                 VEGEFSNKQPENHNTNDFATNIIRFESKPAENEIAMTDEPDEPEDDVEEPD
FT                 HYSISSSSSLDNTDDGERFVSASEPESDEEDVSEQGRRCPGRPKIVRNGQP
FT                 GRPRKEYQVLNNLNSFEDFETPKSVTQALDSEYKRDWQKSMQSEYDALIAN
FT                 KTWTLVDPPHGIKPIGSKWVFRIKRNREGEIERFKSRLVAKGCGQQFGVNY
FT                 WETYSPVIRYETIRMLLAIAVEKQLFMHQIDVSNAYLNSKLDEDVYLTQPQ
FT                 NFVNKNNPQKVLKLQKAIYGLKQSGRAWNDTLNEALKAIGFQRCKNEACLY
FT                 TRKQQKEYSYIAVYVDDLIIICPSEDQIEEIKKLISLKFDMKDGGPLSYFL
FT                 GMEIERDGKQGEIRLNQKKYILALLEKFGMENCRTASTPLDSGFQTQCPNE
FT                 SCKKVNIKTYQSLIGSLMYLAVISRPDILHSISKLSQRNTDPHVEHESAAK
FT                 HVLRYLSGTVDLSLHYCKSDGSVDGFTDADWANDKLDRKSYSGYTFFMAGG
FT                 VFSWASAKQSVVALSSTEAEYIAMATAAREAAYLQKLLTELEWPNIYPMTI
FT                 NCDNTSAQHIATNPVQHKRTKHIDIKYHYIREKVKFNEISLKYVNTEMNVA
FT                 DLLTKNLCKQKHCEFVRQLGLY"
XX
SQ   Sequence 4167 BP; 1559 A; 740 C; 840 G; 1028 T; 0 other;
     acaaaaggtt atgggcccag aagcgccggt cattcggagt gaagtgaatt ggcgaaattt        60
     aaactgaaat ataaatttgc taaaggagct caaagtataa aaattgttga atttaccaaa       120
     atgagtgtgt ctctgcaaat tgagaaactc ggtgataata actatgatat gtggcgtatg       180
     gtcatgcgca gtgtgttaat aacctctgat ctatgggaca ttgtcagtgg taaacttaaa       240
     agaccaacag actcaacgga ctctgcggtg tggtataata ttgaccaaaa agcgttagct       300
     tcaattatac tgaatataaa accgtctcag ctgatgcata ttaaatcttg cagaacgtcc       360
     tctgaagcgt ggcttaaact caaagaaatt tacatgcccg ttggtccagt gagaaaagtt       420
     caactctacc aaaaactttt gcgtctgaac atgagccaag gtggtaatgt ggctgaatat       480
     gtaaactcat ttgttgaaat cacagacaaa ttggccgaat tagatattaa tatcaatgac       540
     gagttgaaag ttataatgat gttgactagt ttgccaaata attttgaaaa ctttgttgtg       600
     gcaatcgaaa cacgtgacaa attaccatca tttgaaaacg taaaactgaa acttctagaa       660
     gaaggggcgc gaagagaaga aagagatgaa cgagatcgaa caaacgaaac ggtttactca       720
     catgtgcatg caaaaaatca tgaagatcaa agaaaaattg atagaagaga caaaatccaa       780
     aaaaaccgca aaaagaatac agataagggt gacgaccgag atcacgccag aataccgttt       840
     gagggcaagt gctacaattg caagaaatat ggccaccgtg ccagcgagtg tcgaagcaaa       900
     ccaaagaatg agagagataa agagcagcaa tcaaataatt gtctaatgca ctctcaaagc       960
     ggcgttgtca gccaaaaatt tgatacatgg tgtgttgaca gtggagctac ctctcatatg      1020
     tgttgtgtaa aaagcatgtt taaaactctc aaaagcaaaa aatcaattat tatgttagca      1080
     gataaaaaat atatagagtc accaggtatt ggcacagtaa cgttcaaaat taaaggtata      1140
     gatattgaac tccgagatgt gctgtatgtt ccagatttgc aaatgaattt tttgtcagtg      1200
     tgcaaagcag ctgaatggga gaactttata acatttgggc acaacgaagc tgtagtaaag      1260
     aacaaacatg gaaaaacaat gctaaccgcc gttcgagaca aaaatttata cacgttcaaa      1320
     acaaaaatgc aaagcaatgc ggtttatatg ttgaacgaaa atgcgataaa atggcataat      1380
     aggtttggac acttaaattt tcaaagccta caaaaattag aaaatgataa acaagtgact      1440
     ggaatgaata tcaaaaacat tagcgtaaat ataaattgcg atacatgtaa caaagctaag      1500
     atatgtgcaa aaccatttcc acaaaaagca aatcgatcga ccaaagaatt actcgaatta      1560
     atccataccg acgtatgtgg accaatgaac tccaaatcat taggaggtaa tcgctatttt      1620
     gttacattta tagatgacta ttcgcgaaaa atacacattt attttatgca tacgaaaaat      1680
     gaagttttta ataagttcaa gtcatttaaa acttacgtag aatgccaaac gaacaaacga      1740
     ataaaatgct tgcaaagtga caatggtcga gaatacataa atagagattt tgaaaattat      1800
     ttaaatgaat gcggaattaa aagacaatta actatccctt atacacccca gcaaaacggt      1860
     gttgctgaac gcgcaaaccg tacaattatt gaaatggcaa ggagcctaat aactcatgca      1920
     aaaatcggag aatttttatg ggcagaagcg gtgcaaacag ccgcatatat tagaaataga      1980
     tgtccaacga gagctttaga tggttgtact ccattcgaaa tatggtacaa acgcaagcca      2040
     tcagtaaagc attttcgaat cttcggatct aaggtttttg ccttagataa aactgtaaaa      2100
     aataaactcc aggctagagg caaagaatac gtttttgttg gctactctca tacagcaaag      2160
     gcataccgcc tatatgacaa agataaacgc acaatagtgg agagaagaga tgtacaattc      2220
     gttgaaggtg agttttccaa taaacaacct gaaaatcata atactaatga cttcgcaaca      2280
     aacatcattc gttttgagtc caaaccagca gaaaatgaaa tagctatgac tgatgaacct      2340
     gatgagcctg aagatgacgt ggaggagccc gatcattata gcattagcag tagcagcagt      2400
     ttggacaaca ccgatgatgg agagagattt gtaagcgcaa gtgaaccaga atctgatgaa      2460
     gaagatgtga gcgaacaagg tcgaagatgc cctggcagac caaaaatcgt aagaaatggg      2520
     cagcctggaa gacctagaaa agagtatcag gtattaaaca atctaaactc ttttgaagat      2580
     ttcgaaacac cgaaatccgt aacgcaagcc ctagacagcg aatacaaaag ggactggcaa      2640
     aaatcgatgc aatctgaata tgacgctcta atcgctaata aaacgtggac attggtggat      2700
     ccacctcatg gtataaagcc aatcggctca aaatgggttt ttcgcatcaa gagaaacaga      2760
     gaaggcgaaa tagagagatt taaatcccgc ttggttgcca aaggctgtgg gcaacaattt      2820
     ggtgtgaatt actgggaaac atactctcca gttataaggt acgagacaat tcgcatgtta      2880
     ttagctatcg ccgtggaaaa acaattattc atgcaccaaa tagatgtctc taatgcatac      2940
     cttaacagca agctagatga agatgtctac ttaacacaac cacaaaattt tgtcaacaag      3000
     aacaatcccc aaaaagtttt gaaactgcaa aaagcaattt atggactcaa acagtccgga      3060
     cgggcctgga atgacactct aaatgaggca ttaaaagcta ttggtttcca acgctgtaaa      3120
     aacgaagcat gcctatacac acgaaagcag caaaaggagt acagttacat tgcagtctat      3180
     gtagatgatc tcatcataat ttgtccaagt gaggatcaaa ttgaagaaat taaaaagctg      3240
     atttccctta aattcgatat gaaagacgga ggaccattaa gctattttct tggaatggaa      3300
     atagagcgag atggcaagca gggcgaaata cggctaaatc aaaaaaaata cattctagca      3360
     cttttggaaa aatttggtat ggaaaattgc cgaaccgcgt caactccgct tgactctggt      3420
     ttccaaactc aatgcccgaa cgaaagttgt aaaaaggtaa atataaaaac ttatcaatca      3480
     ctaattggtt cgcttatgta tttggcagtt ataagccgac cagacatttt gcactctata      3540
     agcaaattgt cgcaaagaaa cacagaccca cacgtggaac atgaatctgc agcgaagcac      3600
     gtattacgct acctttctgg aaccgtagat ctgagtcttc actactgcaa atccgatggc      3660
     tcagtcgatg gctttaccga cgctgattgg gcaaatgaca agctggacag gaaatcatac      3720
     tcagggtaca catttttcat ggctggaggc gtattttctt gggcgtcagc aaagcagagc      3780
     gtagtcgcct tgagcagcac agaggctgaa tatattgcaa tggcaacggc agctagggaa      3840
     gctgcatatc tccagaagct actgacagaa cttgagtggc caaatatata tcccatgact      3900
     ataaattgtg acaacaccag tgcgcagcat atcgcaacaa atcctgtcca acataaacgt      3960
     actaaacaca tagatattaa ataccattac atcagagaaa aagtcaagtt taatgaaata      4020
     tctttgaaat atgtaaatac tgaaatgaat gtcgcagact tactaacaaa gaatttatgt      4080
     aaacagaaac actgcgaatt cgttagacaa cttggtctat attaaaaatt tcaatattca      4140
     gattattata ttatgattaa gcaaaag                                          4167
//
ID   Copia-7_DAn-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_DAn_;
KW   Copia-7_DAn-LTR; Copia-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-200
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 304-304 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 200 BP; 67 A; 38 C; 25 G; 70 T; 0 other;
     tgttgaatta tgttagtaat tataatatac caatctggca acctatatct actcagagag        60
     agcgagctat aaatcttcta ctctcttatg aacatacata tttataagca taaacatgtt       120
     aacttgagtt tttagttcta tcaaatcact tggatgcacc taaccacttc tgttactgga       180
     atatacgaac attattccca                                                   200
//
ID   Copia-7_DEl-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.12, Created)
DT   30-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-293
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7056-7056 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 293 BP; 80 A; 52 C; 45 G; 116 T; 0 other;
     tgttgaaatt tgcgtgttca aatatgcaaa atcacatgga taattatgca cgcatacata        60
     tatatttcct taaatgtata tgtgtataaa aagtagacgc acattccaat gtgctccttc       120
     tttctcgcct gttcgttgtt cttttgctct ctcgatattc tcgttcactt tttttctggc       180
     atcgagagcg tgcggttcat aaaatctaag tgtgcattat tatttgttca ttgcggcttg       240
     tctggttaat acttaattgt attacttatt tattaacaaa aaccataata aca              293
//
ID   Copia-7_DTa-I repbase;    DNA;    INV; 4567 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4567
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, paired flanking LTRs are ~97%
CC   identical to each other.
XX
SQ   Sequence 4567 BP; 1660 A; 672 C; 895 G; 1340 T; 0 other;
     ataggttatg ggcccagtcc atgcctaata aacaattgat ctgcgaaaca gtttatataa        60
     aaagtcttat ttcaatttct tagaaatttc tagttcttgt gaaattgtga tttcttgtga       120
     aattacattg agttgagttc cgcgtgtgta tacctatact tgtacaactg catatgtgtg       180
     cacagtaaaa tggacagggc aaaacgtaat ataaagccat tcgatggcga gaagtacgca       240
     atttggaaat ttagaattag ggctcttttg accgaactgg atgtacttag ggtcattgat       300
     gaggatatac ctgccaaagt ggatgaaaag tggacgaaag cagagcgttg tgcaaaaagt       360
     acgttaatag agtaccttag cgattcgttt ttgaactttg ccacaagcga tataactgcg       420
     cgtcaaattc ttggaaattt ggacgctgta tatgaacgaa aaagtctagc gtcgcagttg       480
     gcagttcgca aacgcttgct ttctcttaag ctatcgagtg aaatgtcctt attgtcccat       540
     tttactattt ttgatgaatt gacaagtgag ttgttggccg caggtgcaaa aatagaagag       600
     atggataaag tgtctcattt attgattact ttgccttcgg cttatgatgg tgtcattaca       660
     gcaatagaga cattatcaga ggataattta acattagctt ttgttaagaa tagattgcta       720
     gatcaggaaa ttaaaattaa aaattataat aatgacacta gcaggaaagc tttaaacacg       780
     atcgttcaaa acaaaaacta taacaacaaa aacaattcat ttaaaaatcg tgtaactaaa       840
     caaaagaaaa tatttaaggg aaattttaag aatagggtta gatgtcacca ctgtgacaaa       900
     gaaggacaca ttaagaagga ttgctaccaa tataaaagaa ttataaatga aagaaataaa       960
     gagaataaaa attacgataa acaagctaaa accgcaacat cacaaggcat tgcatttatg      1020
     gtaaaagaag tgcaagaaaa gtcgcgtgta gataaatgtg gatttattct tgattccggt      1080
     gcaagtgatc atctgataaa tgatgagtcg ctgttcatcg atagtgtgga attggtgccg      1140
     ccgctgaaga tagctgtggc caagcaaggc gaatatatct acgcatctaa gcgtggcatt      1200
     gtgcgtttgc gcaatgagca cgaaataaca ctggaggatg tgctgtattc cgagcaggct      1260
     gctggaaact tgatgtcggt gaagcgccta caggaggcag gaatgtcaat caaatttgac      1320
     aagaatggag taaccatttc caagaatgga ttgacggtgg tcaagaactc aggtatgttt      1380
     aacaatatac ctattgttca gtttcaagca tataatatag atgcgaaaca tataaataat      1440
     tttcgattat ggcatgagag acttggtcat ataagcaatg gcaagttatt agaaataaaa      1500
     cgaaataata tgtttagtga taacagtctt ttaaataatt tagagctatc ggatgaaatt      1560
     tgcgaaccat gcttaaatgg aaaacaagct aggttaccgt ttaaacaatt taaagataaa      1620
     acacatatta aaagacccct atttgttgtg cactcagatg tttgtggacc cattactcca      1680
     gttacactaa atgacaaaaa ttactttgtg atctttgttg atcagtttac acactattgt      1740
     gtaacttacc taataaaaca caaatctgac gtattcaata tgtttaaaga ctttgtagca      1800
     aaatgtgaag ctcattttaa tttaaaaatt gttaatttgt acattgacaa tgggagagaa      1860
     tatctctcaa atgagatgcg tcagttttgt gttaataaag gtattactta tcatttaaca      1920
     gtaccacaca caccacaatt aaatggtgtt tctgaaagaa tgattagaac catcacagag      1980
     aaagctcgtg ccatggtaag tggtgcacaa cttgacaaaa gtttttgggg tgaagcagtg      2040
     ttaactgcaa cttacttaat taatcgaatt cctagtaggg caatagttaa tagcgtgatg      2100
     accccttacg agatgtggca caataaaaag cccgatttaa aacatttgag agtgtttgga      2160
     gcaactgtat atgtgcacaa taaaattaaa aaaggaaagt ttgatgataa atcatacaaa      2220
     gctattttag tgggctacga agcaaatggc ttaaaactgt gggatgctgt tcatgaaaaa      2280
     tttctcgttg caagagatgt ggttgtcgat gaaaccaata tggttaattc tagggctgtt      2340
     aaatttcaaa cagcattcct gaaagatagt aaggaaagta ccaataaaaa tttcccgaat      2400
     gaaagtaagg aaaataaaga aacaaaattc ccgaatgaaa gtaaggaatg cgacaacaca      2460
     caaatcctga atgatagtaa ggaaacagat gaacattttc tgaatgagag taagaaaaga      2520
     aagcgagatg atctcctgaa tgaaagtaag ggatcagaca acccgaatga gagtagggaa      2580
     aatgaaacag cagaatactt cgatgaaact ggatatgtta agaatccagt tggaagtgat      2640
     ggtattgaaa taacgagtag aagaagtgag agattaaaaa caaagcccca aatatcatat      2700
     tatgaagatg ataatagttt tgataaattt gtattaaatg ctcacactgt cttcaatgat      2760
     gttccaaata catacgatga aattcagtat aggaatgata agttgttttg ggaggaagcc      2820
     ataaaaacag agttaagtgc ccatgaacta aataatacct ggacaatcgt agaaagtcct      2880
     acacataaaa acatagtaga tagcaaatgg gtattttccg ttaaatataa cgaactagga      2940
     actcctacta gatataaagc aagattagtt gcacgaggat ttactcaaaa ataccaagtc      3000
     gattatgaag agacttttgc tcctgtagct agaatttcca gttttcgatt tatattatcg      3060
     ttggcagtac aatataactt aaaagtccat caaatggatg taaaaacagc attcttgaat      3120
     ggcacgttaa aagaggaaat atatatgaga cttcctcaag gtgtacaggg caaaggtggc      3180
     aatgtatgta aattgaataa ggcaatttac ggtctcaaac aagccgctag atgctggttt      3240
     gaagtttttg aacaagcatt gaaagactgt gagtttgtta actcttccgt agatcgctgt      3300
     atatatatcc ttgataaagg tgatatcaag gaaaatattt atgtgctgtt atatgttgat      3360
     gatgtggtta tagctacggg aaatatgaca acaatgaata aattcaaaaa ttatttaatg      3420
     aaaaagttta gaatgaccga cctaaaggaa ataaaacatt ttattggaat tagaatagaa      3480
     atgtatgaag ataaaatttt cctgagccaa gctgcatatg ttaaaagaat cttaagtaaa      3540
     tttaacatgg aaaattgcaa tgcagttagt actcccttac caaacaaact aaattatgag      3600
     ttacttaatt cagatgaaaa ctgcaatgct ccatgtcgta atctcatagg atgtttaatg      3660
     tacataatgc tatgtacacg tcccgactta actactgcag taaatatttt aagtagatat      3720
     agtagcaaaa ataattccga gctatggcag tgcttaaaaa gggtccttag gtatttaaaa      3780
     ggaactattg aaatgaaact tatttttaaa agaaatgctg agtttaaaaa tacattaatt      3840
     ggttttgtag attctgattg gggaggaaac gagattgata gaaaaagtac cacagggtat      3900
     ttattcaaaa tgttcgatct aaatttaatt tgttggaaca caaagaggca gaactcagta      3960
     gcagcctcat caactgaagc tgagtacatg gcattatttg aagctgtgag ggaagcgctg      4020
     tggctaaaat ctcttcttag tagtgttaat atcaatctcg aaaatccaat taaaatttac      4080
     gaagataacc aaggctgtat cagtatagca aataatccct catgtcataa acgagccaaa      4140
     catattgata tcaaatacca ttttgccaga gaacaaattg aaagtaacac catttgtctt      4200
     gagtatattt ccacagagaa tcaacttgct gatattttca caaagccact gcctgccgct      4260
     aagttctatg aaatacgaca cgagttggga ttactacaag atgactgatc cgctgtttgc      4320
     tgatgccgaa gttttttttt attattttga atttaatcga tctcattaaa tacttttgtt      4380
     catttttgta taagcattaa gttattgaaa tttaaatttt tctggatttt ccccgtatcc      4440
     ttgcagcaaa tgctggatca tataactatt cccagaatgc acaccaccca cactaagtac      4500
     ataacattaa caagtgaata tattatgtta agtttataat tttatagatg ttatttctga      4560
     gggggcg                                                                4567
//
ID   Copia-7_DTa-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-228
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5635-5635 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 228 BP; 62 A; 44 C; 36 G; 86 T; 0 other;
     tgttggaata cccctattcc tattcagaaa taccattgaa ataccattta gtatatatcc        60
     tttttggctt taatgaagac atagcctttg gtcatactga ccgatcttct ctctcttttc       120
     ttgtgacctt ttctcgagct aagttgtggt gctggtgttg cggtataatt aaaacataaa       180
     tcataactac atctgtgtct ttactgggta taattagcat cataaaca                    228
//
ID   Copia-7_DWil-I repbase;    DNA;    INV; 4006 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_DWil_;
KW   Copia-7_DWil-LTR; Copia-7_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4006
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1803-1803 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1455-1958] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           939..3413
FT                 /product="Copia-7_DWil-I_1p"
FT                 /translation="MIGLSIVAPHHTCVRTVSYLIDLNEIMKLLGKRNSGS
FT                 KLGYTITLRDVLFVPGLQCNFISVGKAVSNGCTVLFNSGTAKVNDDKGINI
FT                 LMAKKVCGLFLCETKNQERLCVSKASDELEKWHMRYGHLNVQSLRELQNKG
FT                 MVRGLTSSITGENLDCIDCMKNKCHVKPFEKSQTRATKLLELIHSDVCGPM
FT                 NKESNGGAKYFMTMIDDLSRYIHVYPMKYKSEVAKIIKEHVTMVERQTGRK
FT                 VKSIRSDNGTEYVNKELDEYLKSNGIKRQLTVPYTPQQNGVAERCNRTLVE
FT                 MARVMLNSAGLKESFWAEAIVCAAYLRNRSPTKSVEGKTPFEVFTGHKPVV
FT                 KHLKVFGCVAVALEKGPRKKFQEKGREYIMVGYSESSKAYRLYDKKTGDVK
FT                 ISRDVYFIENCQTRIRENSEVTMVLDEVIDEPNNVVEGHSTEDISSEDTGN
FT                 GNLTNCVGDEAADNDVEVYEEPKRGPGRPRIVRTGLRGRPTKQYNVLNVML
FT                 ATNVEVPETVQQALTGQQAEKWKTAMQDEYEALLRNNTWEQVKLPAGVKPI
FT                 GCKWIFTLKENATGEIERYKARLVAKGCSQKYGIDYKETYSPVVRYATIRM
FT                 ILAMAAEYELYVHQIDVSTAYLNGDLGEEVYMQQPEFYDDKSGGVLKLKKS
FT                 LYGLKQAGRVWNTTLDAVLRKLGYEACESEPCLYTRCAPDKTIDVIAVYVD
FT                 DLLLACSDKGKMLATKQAISSEFQVVDKGPITHFLGLEIQRDGDKGAIRLS
FT                 QSMHIRSLMKELGMEICRTVSTPLEANFQVKCDNKSCKRIDATEYQSVIGS
FT                 LMYIALCSRPDILHSVCKLSQRN"
XX
SQ   Sequence 4006 BP; 1341 A; 692 C; 1012 G; 960 T; 1 other;
     ggttatgggc ctcagtgtta agtgtattca ctaaaaaata gtgtgaaagt attgagtggt        60
     caagattcgt gtattttttc tcggcataac ggacattgca agaaaaatga gttcgatgta       120
     caatattgaa aagttggacg acgccaacta tgacacgtgg tgcgtacttg tgcgaagcgt       180
     gttggtacat caagatttgt ggtcagtggt ttcagggaac ttgtggaacc caaaactgat       240
     gaagcgtttg aaacatggaa acgtcaaaac gacaaagcca tggcggtgct gtttttgtcg       300
     ataagtgcgc cgcaattgaa ctccataaaa aagtgcgaaa gagctagcga gatatggaaa       360
     gaactagaaa agttccatcg accaacaggt ccagtgagaa aagtgaccct gtttaagcag       420
     ttattaaaca aaagaatggc tgaaggtgac agcgtgcaaa aacacatatt ggaattttca       480
     aacattgttg aaaatttgtc ggtgatcggt gtaagtttgc cagaagagtt taccgtaatt       540
     ttgttgcttg cgagtttgcc catgtcttat gagaactttg tcgtggcctt ggaagctcgt       600
     gatgagttgc cgagtttcag taccataaaa tgcaagctag ccgaagaaaa tgaacgacga       660
     aagacgaaca atcaaaacga tgttgtacag gcattcgcag catgctctat cggcggtgag       720
     aggggtaagc gacgagacaa caagtcagag gcagacaggc gccgatgctt taaatgtggc       780
     caaccagggc atttcgcggc aaaatgcgcg atgaaagaag agaatgaaaa caacgccaat       840
     gtgagaggcg ggaaaaacag cggaagatgc gaatattgga agaataaaga ggggcaacga       900
     tctttgcggc gttgccacta acaatcggat ggatatcgat gattgggtta tcgatagtgg       960
     cgccacatca cacatgtgtg cgcaccgtga gttatttaat cgacttgaac gaaataatga      1020
     aattattagg aaagaggaac agtggcagca aacttgggta cacaataacg ctcagagacg      1080
     ttttatttgt accaggcttg caatgcaatt tcatatcggt gggaaaagcg gtttcaaatg      1140
     gatgcaccgt acttttcaat tcgggaactg ccaaagttaa tgacgataag ggcatcaata      1200
     tattaatggc caaaaaggtc tgtggattgt ttctgtgtga aactaaaaat caagagagac      1260
     tgtgtgtttc taaagcctcc gatgagctcg aaaaatggca tatgcgatat ggtcatttaa      1320
     atgtgcaaag tttgcgtgag ctgcagaaca aaggaatggt tcgaggtttg acatcaagca      1380
     ttactggaga aaatctagac tgcatagatt gcatgaaaaa caagtgtcat gtaaagccgt      1440
     ttgaaaaatc gcaaactaga gctacgaagt tgctggaatt aattcatagt gacgtatgtg      1500
     ggcctatgaa caaggaatcc aatggtgggg ccaaatattt tatgacaatg atcgatgatt      1560
     tgagtcgata tattcatgtc tatcccatga agtataagtc agaggtggcc aaaataatta      1620
     aagaacacgt taccatggtg gagcgtcaga caggccggaa agtgaaatcc ataaggagtg      1680
     ataatggaac ggagtatgtc aataaagagt tagatgaata tctgaagtcc aatggcataa      1740
     agagacagct cacagtcccc tacactccac agcaaaatgg ggtagcagaa cgctgcaacc      1800
     gaacactcgt ggaaatggca agagtaatgc tgaatagtgc aggtttaaaa gaaagcttct      1860
     gggcagaggc aatagtttgt gctgcatatc taagaaatag atcgccaaca aaatcagttg      1920
     aaggcaaaac gccgtttgaa gtgtttactg gacacaagcc tgtggttaag cacttaaaag      1980
     tatttggatg cgtcgcagtt gcactagaaa agggaccaag gaaaaagttc caagaaaagg      2040
     gaagagagta tattatggtc ggatactcgg aatcttcaaa agcgtatcgt ttatacgata      2100
     agaaaactgg cgatgtcaaa ataagcagag atgtatattt cattgagaac tgtcagacaa      2160
     ggattagaga aaactctgaa gttacaatgg tactggatga agtaatagat gaacccaaca      2220
     atgtcgtgga aggtcattca acagaagaca ttagttctga ggatacaggt aatggtaatc      2280
     tgacaaattg tgtaggcgat gaggctgcag ataatgatgt ggaggtctat gaggaaccaa      2340
     aaaggggacc aggcagacca agaatagtca gaacgggtct acgaggacga ccaaccaaac      2400
     aatataatgt tctgaatgta atgttggcaa ctaacgtaga agtaccagaa acagtgcaac      2460
     aagcactaac gggtcaacaa gcagagaaat ggaagacagc aatgcaagat gaatatgaag      2520
     ccttactgcg aaacaataca tgggaacaag ttaaattacc agctggtgtg aagcccattg      2580
     gatgcaaatg gatatttacc ctgaaagaga atgcaactgg agaaatcgaa cgatacaagg      2640
     caaggctcgt ggcgaaaggg tgcagccaga aatatggaat agattataaa gagacttatt      2700
     caccggtggt gcgctacgct acaatacgga tgatccttgc aatggcagcg gaatatgaac      2760
     tatacgttca tcaaattgat gtatcgacgg catacttgaa tggagatctt ggagaagagg      2820
     tctatatgca gcaaccggag ttttacgatg acaaatctgg cggtgtgctg aagctaaaaa      2880
     agtcgttgta cggtctaaaa caagctggcc gagtttggaa cacaacgttg gatgctgttc      2940
     tgagaaagtt gggatatgag gcatgtgaaa gtgagccatg cctgtacaca agatgtgcac      3000
     cagataagac gattgacgta atcgccgtat atgttgatga cttgctgctt gcgtgttcag      3060
     acaagggtaa gatgttagct actaaacagg ctatctcttc tgaatttcag gttgtcgaca      3120
     aaggaccgat tacacacttt ctgggtctcg aaatccaacg tgatggtgac aaaggggcta      3180
     tacgtctcag ccagagtatg catatcagga gcctgatgaa ggaactgggc atggagattt      3240
     gccgcacggt atccaccccg ttagaagcta atttccaggt taagtgcgac aacaagtcgt      3300
     gcaaacgcat cgatgctacg gagtatcaat ccgtaatagg ctctttgatg tatattgcgc      3360
     tatgctcacg accagacatt ttgcactcgg tgtgcaaatt atcacagagg aatamagatc      3420
     cccatggcga gcatctcgca gcagcgaaac aagtgctgag atatctgaac cagacggcag      3480
     atatggcaat aacgtacaag aagaccggcg ctgcgatcac aggctatgca gacgcagatt      3540
     gggcaggtga ctcaactgat agaaagtcct acactggata cgcattcatg tggggcggct      3600
     cagtaatctc atggacatca aggaagcaaa aatctgtggc tctaagcagt accgaggcag      3660
     aatatatggc gctttccgat gctgcaaaag aggctattta tataagaaaa ctgataaatg      3720
     agatgaaatt gtattttaag cttgattgta taaccttaca tggcgataat gttggtgctt      3780
     taaatcttgt aaaaaaccct gtttatcatg ctagaagcaa acatattgat gtaaagtacc      3840
     accatataag aaactcattt gaagagaatt tgattaagct agaatactgt ccaacaaccg      3900
     aaatgattgc tgatattctt actaagaatc tatgtaaagt taatcattta aaatgtacgg      3960
     cgttgcttgg actaaatagg tattagaacc ctgaattgag gggaag                     4006
//
ID   Copia-7_DWil-LTR repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_DWil_;
KW   Copia-7_DWil-I; Copia-7_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-139
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1804-1804 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 139 BP; 40 A; 32 C; 23 G; 44 T; 0 other;
     tgttgatatg gcaattctgt gctgtgtctg tcagccctgt acatgtggca accctagtta        60
     agcttatgta taataaaatt gagctcactc tcatctaagc aaccaaacgt tgtagttcta       120
     cacttttcac aaaccaaca                                                    139
//
ID   Copia-7_LH-I repbase;    DNA;    INV; 4115 BP.
XX
AC   ADOQ01012174;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_LH_;
KW   Copia-7_LH-LTR; Copia-7_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4115
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012174; Positions    7637    3523.
XX
CC   Positions [1561-2061] - Integrase core
CC   'TAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..2394
FT                 /product="Copia-7_LH-I_1p"
FT                 /translation="MEVLLEELSLKEHIKSQVLDAEIRAEETQEVYNSRMV
FT                 SLKRKDTKCKSQIVQRIADSHLEYAKDKLSAFDIWTELKNVFERRGVASQL
FT                 LLRKKLLLMKFKPSVESLSSHFLKFESFVRELKSTGANMEETDIVCHLLLT
FT                 MPPEYDVVVTALETLSKESLTLSFVKNRFLDEESKRKGNVKSTKNEAQHST
FT                 EFTLSTNDSRKNIRDTGNKHFNYRCYNCGAYGHRRSECKKPKQQPEGIRQN
FT                 KYKEKQANLAADADKSKAVSFSAIINDIKHEKDSTWILDSGASEHLTRDEK
FT                 LRRNTRLLTQPTKIRIAKAGTTLMANKVGTIYGKTIVNGEEIEVTVKNVFY
FT                 VPGLEFNLLSVPKLEANDFKVVFENKKRKIQKDTQVYAVAYRRHQVYELEL
FT                 MSLAKIATVVQVRDDAKIWHERYGHIGLNNLKRVATMVDGIDSTTLELTNN
FT                 KICHTCIEEKQTKLPHNQERTRAKRPLELIHSDVVGSITPESREGNRYILT
FT                 FIDDYTHFTVAYLLKRKSEVFHYFKIYEAMVTAHFNSKISRFRCDNGREYT
FT                 PKEMIQAFQEKGIHIEYTIRYTPQQNGVAERMNRTILDKARCMILHSQLDK
FT                 SYWAEAVLSAIYIINRSPTAALKNIVPAELWYNKRPDVRKLKVFGCIAYMH
FT                 VPKELNPRKFDSRSKNCIMVGYTDNGYRLWCPEEQRIICSRDVIFDETRFK
FT                 HHQPFIGTNVKRNWNLNMKMKNSQPQRRRIKKKVHLKLNLLIQE"
FT   CDS           2919..4061
FT                 /product="Copia-7_LH-I_2p"
FT                 /translation="MKQPEGCEDGTSRVCRLNKTLYRLKQSPRIWNFEFKT
FT                 YAKKIGLKQSEYDQCMFYESDEKSRIYLLLYVDVIIAGNNKDRLIEIKHLL
FT                 EERFSMKDLGSLKNFLGIKIERHKQRMDLSQSTYISNLLKWFGMQDSKPVN
FT                 TPMESKSSIDTSYTNAVDDEKKPYRELVGCLMYIMMNTRLDISAAVNYYSR
FT                 YQEIATDAHWKGLKRILRYLKGTINMCLSFQKDSQNPLLAAYADADWAGSE
FT                 DRKSTTGFLIEIYGNPVCWVTKKQSTVALSSTEVEYVALAMASTEVVWMRN
FT                 FLEELEWKIKEPITIFEDNQSCIHLLNKWEHQRLKHIDVKFNFIRDLQTNG
FT                 VINVTYIPSEQQKADVLTKSITFVKFKKLRNSLNLKCI"
XX
SQ   Sequence 4115 BP; 1515 A; 676 C; 853 G; 1071 T; 0 other;
     ggttatgggc ccaggaattg ctcagcaatt gcccagttat aaaaaattga atcgactaac        60
     ctcacactga cgaaaaggag gaataatctc gactcaatgg aggaagataa gcatcgagta       120
     ccactctttg atggtacaaa ttataacaac tggaagtttt gaatggaagt attgctggaa       180
     gagctcagtt tgaaagaaca tatcaaatct caagtattag atgctgaaat aagagctgaa       240
     gagacacaag aggtttacaa ttcgcgaatg gtaagtctaa agagaaagga cacgaaatgc       300
     aagtcccaaa tagtccaaag gatagcagat tcgcatttag agtacgcaaa agataagtta       360
     tctgcttttg acatctggac ggaattaaaa aatgtatttg aacgacgagg tgtagccagt       420
     caattactct tacgcaaaaa attattgtta atgaaattta aaccttcagt tgagtcatta       480
     tcgtcgcatt tcctaaaatt tgaatcgttt gtacgtgaac ttaagtccac aggagcgaac       540
     atggaagaaa cggacattgt gtgtcattta ctcttaacaa tgccccctga atatgatgtc       600
     gtagtgacgg cgttggaaac gttatcgaag gaatcattga ctctaagttt tgtcaaaaat       660
     cgtttccttg atgaagagtc taaacggaaa ggaaatgtta aatcaacaaa gaacgaagca       720
     cagcattcta cagaatttac tttatcgacg aatgacagtc ggaaaaatat acgtgacact       780
     ggaaacaaac atttcaatta caggtgttac aactgtggtg catatggtca tcgccggtcg       840
     gaatgtaaga aaccgaagca acagcctgaa ggaattcgac agaacaaata taaggaaaag       900
     caagcaaatc tcgcggcaga tgcagataaa tccaaagcag ttagtttttc agcaataatt       960
     aatgatataa aacacgaaaa ggattctacc tggattttag attccggagc atcagagcat      1020
     ttaaccaggg atgaaaagct tcggcgaaat acaagattat tgacacaacc tacaaaaatt      1080
     cgtattgcaa aagccggtac aacgttaatg gcaaataaag taggcactat ttatggaaaa      1140
     actattgtta acggagagga aattgaagtc actgttaaaa atgtcttcta tgtgcctgga      1200
     ttagaattta acttgttgtc agtgccaaaa cttgaagcaa atgattttaa agtcgttttt      1260
     gaaaataaga aaagaaaaat acaaaaagat actcaagttt atgcagtagc gtacagaaga      1320
     catcaagtat atgaattgga attaatgagc ttggctaaaa tagcaactgt cgtacaagta      1380
     agggatgatg ctaaaatctg gcatgaacgt tacggacata taggacttaa taatctaaaa      1440
     agggtcgcaa caatggtgga cggaatagat tccacaacat tggaactaac aaataataaa      1500
     atctgtcata cctgtataga ggaaaagcaa acgaaattgc ctcacaatca ggaaaggaca      1560
     agagctaaac gtccattgga actcatacac agcgatgtag ttggatcaat tacacctgag      1620
     tcacgagaag gtaatcgata tatactgaca tttatcgacg attacacaca ctttacagtt      1680
     gcgtatctac ttaaaagaaa aagtgaagtt ttccactact ttaaaattta tgaggctatg      1740
     gtcactgcac actttaattc aaaaatcagt agatttcgtt gtgacaacgg ccgggaatat      1800
     acacctaaag aaatgattca agcgtttcaa gaaaaaggaa tccatattga atacacaatt      1860
     cgatatacgc cacaacaaaa cggcgttgcc gaaaggatga acagaaccat tcttgataaa      1920
     gctcgatgta tgatattaca ttcacagcta gataaaagtt attgggcgga agcagttcta      1980
     agtgcaattt atattattaa tcgaagtccg acagcagcat tgaaaaatat agttccagcg      2040
     gagttatggt ataataaaag gccagatgta aggaaactaa aagtctttgg atgcattgcg      2100
     tacatgcatg tacctaagga attaaatccc aggaaatttg attctcgatc aaaaaactgt      2160
     atcatggtgg gatacacaga taatggttac cgcttatggt gtccagaaga acaacgaata      2220
     atctgtagcc gagatgtcat ttttgatgaa acaagattta aacatcatca accgtttatc      2280
     ggaacaaatg tcaagaggaa ttggaatctg aacatgaaga tgaagaattc acaaccgcaa      2340
     cggaggagga tcaagaagaa agttcatctg aaactgaatc tattaataca ggaataaaag      2400
     ataaaactgt aactaactca agagttgtaa acgaacaacc aggtcctcgt cgaagtattc      2460
     gtgaaaagaa aacactttct tatcttgaag attattgtgt gctggttttg catgctgaga      2520
     gttacgttga agacgttcca agttgttatg ctgaaattga ctctcgtaat gataaagagg      2580
     aatggcttga ggcaataaat gaagaactaa aggcgattca agataataag acttggaatt      2640
     tgacatacct acccagtgga aaaagggcaa tcgacaataa atggatattc aaaatcaaac      2700
     gtgatgaaca tggaaatatc cagcgttata aagcacggct tgtagtaaag ggctgtttac      2760
     aaaaaaaggg ttttgactac gatgagacgt acgcgccagt agcaagactg actacagtaa      2820
     gaattttgtt gtcaattata atcaatgaag acttgtacgt ggatcaactg gatgtcaaaa      2880
     atgcctttct ccatgggaaa ctcactcaag aaatatatat gaaacagcca gaaggctgtg      2940
     aagatggaac gtcgcgagta tgcagactca ataaaactct atatagactg aagcaatcac      3000
     cgcgtatttg gaattttgaa tttaaaacct acgcgaaaaa gattggcttg aagcaatcag      3060
     aatatgatca gtgtatgttt tacgaatcag atgaaaaatc aagaatatac ctactactgt      3120
     atgttgatgt catcattgcc ggaaataata aagatcgact gattgaaatt aagcacctgt      3180
     tggaagaacg tttctctatg aaagatcttg gatcgttaaa gaattttctt ggaataaaaa      3240
     tagagaggca caagcaacga atggatctta gtcaatcaac atatatctcg aatctgctga      3300
     aatggttcgg tatgcaagat agcaaaccag tgaacacacc gatggaatcg aagtcgtcca      3360
     tagatacgtc ctatacaaat gcggtagacg atgaaaagaa gccctataga gaattagttg      3420
     gatgccttat gtatatcatg atgaatacga gactggatat cagcgcagca gtaaattatt      3480
     acagtcgata ccaagaaata gcaactgatg cacattggaa gggacttaaa cgaattcttc      3540
     gttatttaaa gggtaccatt aacatgtgtt taagttttca gaaagattct caaaatcctt      3600
     tactggcggc ttatgccgat gcagattggg caggttccga agaccggaaa tcaacgacgg      3660
     gtttcctgat cgagatctat ggcaatcctg tctgttgggt aactaaaaag cagtcaacgg      3720
     tggccctatc gtccaccgag gtggaatatg tggcactggc catggcttcg acggaagtcg      3780
     tatggatgcg caatttcttg gaggaactag aatggaagat caaggaaccc attacgattt      3840
     tcgaagataa ccagtcctgc atacatcttt taaacaagtg ggaacatcaa cgattaaaac      3900
     atattgatgt aaaatttaac tttattagag acttgcaaac gaacggtgtt attaatgtaa      3960
     catacattcc ttccgaacaa caaaaggctg atgtgttaac taaaagtata acgtttgtta      4020
     aatttaagaa attaagaaac tcattaaact tgaaatgtat ctaatagtca ttaatgtaat      4080
     aagtttttct ttaacaagca taacttaagg gggag                                 4115
//
ID   Copia-7_LH-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   ADOQ01012174;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_LH_;
KW   Copia-7_LH-I; Copia-7_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-269
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012174; Positions    3522    3254.
XX
SQ   Sequence 269 BP; 61 A; 53 C; 53 G; 102 T; 0 other;
     tgttagaaag ttagttatgc ttgttatgta ttgtttttaa aactagcgct agtgtggcgc        60
     tacagtgaca cttattttct tcttttgtct cgccccctag cgtttgccct ttgtaccttg       120
     cttactggct agcgcgaacc tctgtactaa taaaggtgtg gttttataca aattctctct       180
     ttaattctct gaagagatat aatcagctcc tttctttctc ctctgggtgt gcggggtcga       240
     aagtgcgcat aatattaata gtaataaca                                         269
//
ID   Copia-7_LMi-I repbase;    DNA;    INV; 4162 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4162
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3085-3085 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(212..658,637..786,817..1344,1305..1823,
FT                 1801..2271,2246..2872,2857..4152)
FT                 /product="Copia-7_LMi-I_1p"
FT                 /translation="MTSNVGFMKTTTPVVDKLTGKDDFNTWKFGMKLILMR
FT                 EKLWDYVIGASTATNAEKDTDAWTLILLHVDRSLYAHVENTTKAKEAWDTL
FT                 ENLLAGKTKTRWMNLWDDLLDTTLSKFDGNVQNYVTHILDVANKLQSMGKP
FT                 VDDGLIALICWTNCTHLLRGLPKVCLPYWMGIESSTTDENFTSDNIKEKLL
FT                 NGSVENTLGSQNIVRSHSRVFPRINRKEKNKVFNCWKYGHFKSECPQRQQS
FT                 TKKNLGNDKSLFCALGVSDFNQNEWIIDSGTSSHMTSRKEWLQDFIPEKCG
FT                 QKVIKCADNVELVSEGRGNVIVNSPDITSIRNVILVPGLAANLLSVSALVK
FT                 KGINVVFDKDGCKLFKKGKLFCSRSESMAFINAILFQIRVNGLYKLKNVVP
FT                 VLSDECALAVRKGSNIIDLWHRRLGHVRVDTGLKLCLQKRGINLECCDSES
FT                 MDKCKSCVLGKMSKFPFPKAGGQRVSKVLSLIHMDLCGPMEEMSHGMAKYM
FT                 YLLVDDYSRRTFCYFLKSKDQTFEFFCEFKTWAENRVGAKIKAVRSDNGSE
FT                 LDQTMVVNSKFESFLRVNGIEHQLSVPYSPEQNGVVERTNRSICEMARCML
FT                 FDSGLPKQYWAEACNTAVYIKNRVPHRILNGKTPQELWKGKVSSLNHLKVF
FT                 GCRALIHVPDKLRTKWDAKAKELIFVGYDELTKGYRLIDPQNPKKIVKGRS
FT                 VVFLEKAEVLFFSNEFWTDKTRTQAESEDNYMFWPSNQNTEEVEAKEIVEV
FT                 SSDETDSADTDQNSDYILDTQSVVDLEETAQSVVDTEETDSLGGDKPVRRS
FT                 ARVPKPKEYPDYVTYFVNDFSSLGEDPVNLEDAMSRGDRENWIKAMKEEIM
FT                 SFQKNGVWELVDPPKTRSMVGNKWVFKLKRSAYGTALYRARLVAKGFTQKF
FT                 GIDYEETFHQRNFSPVVRCSTLRVLISLAVNLDLAIYHFDVKTAFLYGDLK
FT                 ETIYMKQPDGFTSKGNEDKVYKLCKAIYGLKQSARQWNEKAKSVLLDLGYV
FT                 ANTDEDCVFIKKSGKDVAIVALYVDNFFIFCKNKEMKNKLHQGLSEHFEVK
FT                 DLGEAKSCLGMCITRNWKEGNLKLDQKGYIADVLKRFNMLECTPVGTPMEA
FT                 GLKLWEVQGDKINVPYQELVGCLLYISINTRPDICYAASILSQYNSKFTSV
FT                 HWKAAKRVLRYLKGTMNYGLVFNKGDVEDLHVTGFVDSNFVDDLTTGLSQY
FT                 GSVFLLGRNLVSWESKKLKDVATSTTEAEYAALNSAGKEAVYLRWLIGGLL
FT                 HKKQQDPVTIFQDNQSSIKLSENPVLHSRLKHVCAKGHFIRQCVKRNEVVV
FT                 KYLQSKEMPADVLTKPLARGQHMYLIEKLKLSPD"
XX
SQ   Sequence 4162 BP; 1386 A; 594 C; 971 G; 1211 T; 0 other;
     ggttatgggc ccagtacgga acccaggaca aaagttaaaa cataaacaca tttagaaaaa        60
     ctgactagac agaaatttgt atttggataa cagtatcata ttatatgaaa tacttgctat       120
     ggtttgtgtt tcatgattct aattggtgtt tgatctttca ttttggaaga aattgtttaa       180
     gtgattttgt tactgtgaaa ctgtttccaa aatgacttca aatgtaggtt tcatgaaaac       240
     cactactcca gtggtagaca aactaacagg caaggatgat tttaatacgt ggaagtttgg       300
     aatgaaacta atcctaatgc gtgagaaatt atgggactat gtcataggtg caagtactgc       360
     tacaaatgca gagaaggata cagatgcgtg gacacttatt cttttgcatg tggatagatc       420
     tctgtatgca cacgttgaaa atacgacaaa agcaaaagaa gcttgggata ctctggaaaa       480
     cctacttgct ggtaaaacta aaacaaggtg gatgaatctc tgggatgatt tgttggacac       540
     tacattatca aaatttgatg gaaatgttca gaactatgta actcatattc tggatgtagc       600
     taacaaattg cagagcatgg gcaaaccagt tgatgatgga ctaattgcac tcatttgctg       660
     agaggtttac caaaagtttg tctgccttac tggatgggta tagaatctag tactacagat       720
     gaaaatttca cttcagacaa cattaaagaa aagttgctaa atggaagtgt ggagaatacc       780
     ttaggttaga tagatgtgat gctgatagtg ctttaatcac aaaacattgt aagaagtcac       840
     agcagagttt ttccaaggat aaacagaaaa gaaaagaata aagtgttcaa ttgctggaag       900
     tatggtcact tcaagtcaga gtgcccccaa agacaacaat ctaccaaaaa gaacttaggg       960
     aacgataaat cattgttttg tgcactcggt gtatctgatt tcaatcagaa tgagtggatt      1020
     attgattctg gaacatcatc acatatgact tcaagaaagg aatggcttca agattttata      1080
     ccagaaaagt gtggacaaaa agttataaag tgtgctgata atgttgaatt agtaagtgaa      1140
     gggagaggaa atgttattgt caattcacca gacataactt caatcaggaa tgttatcctt      1200
     gtccctggat tagctgctaa tttgttgtca gtatctgctt tggttaagaa gggtataaat      1260
     gttgtttttg acaaagatgg atgtaagttg ttcaaaaaag gtaagctatt ttgttccaga      1320
     tcagagtcaa tggcctttat aaactgaaaa atgttgtacc tgtgttgtca gatgaatgtg      1380
     ctctagctgt tagaaaaggt agtaatatta tagacttgtg gcaccgtaga cttggtcatg      1440
     ttagagttga cactggactt aagttgtgtt tacagaagag aggcataaac ttggagtgtt      1500
     gtgactctga atcaatggac aagtgtaaat cctgtgtgct aggcaagatg tctaaatttc      1560
     catttcctaa agctggggga caacgggtat ctaaggtgct tagcttaatt catatggatt      1620
     tatgtggtcc gatggaggaa atgtcacatg gaatggctaa gtacatgtat ttactagtgg      1680
     atgattatag caggaggaca ttctgttatt ttctcaagag caaagatcaa acatttgaat      1740
     tcttctgtga gtttaaaact tgggcagaaa atagggttgg agcaaaaatt aaggctgtaa      1800
     gatcagacaa tggtagtgaa ctctaagttt gaatcatttc tcagagtgaa tgggattgaa      1860
     catcagctta gtgtacccta cagtccagaa cagaatggtg tggtggagag gactaataga      1920
     tcaatttgtg agatggcacg gtgcatgtta tttgactcag gtctacctaa acaatattgg      1980
     gcagaggcat gcaatacagc tgtttatatc aagaatcgtg ttcctcacag aatacttaat      2040
     ggtaagactc cacaggaact atggaaggga aaagtatctt ctttgaacca tttgaaagtg      2100
     tttggttgtc gagcccttat ccatgttcca gataaactca gaacaaaatg ggatgcgaag      2160
     gcaaaggaac ttatttttgt gggttatgat gaactgacta aaggttacag attaattgac      2220
     ccacagaatc ccaagaaaat tgtgaaaggc agaagtgttg tttttctcga atgagttctg      2280
     gacagacaaa acaagaacac aagctgaaag tgaagataac tatatgttct ggccaagtaa      2340
     ccagaatact gaagaggttg aagcaaagga aatagtggaa gtaagtagtg atgagactga      2400
     cagtgcagac actgatcaaa actcggacta cattctggac actcaatcag tggtagactt      2460
     ggaagagact gctcagtcag tggtagacac ggaagaaact gatagtctag gaggtgataa      2520
     accagtcaga aggtcagctc gtgtacccaa acccaaggaa tatccagact atgtaacata      2580
     ttttgtaaat gatttttcca gtttgggaga agatcctgtg aatttggagg atgctatgtc      2640
     gagaggtgac agagaaaact ggataaaggc tatgaaagaa gaaataatga gcttccagaa      2700
     gaatggtgtt tgggaacttg tggatccacc aaaaactaga agtatggttg gtaacaagtg      2760
     ggtatttaag ttaaaaagaa gtgcatatgg tacagcactc tatcgggcta gacttgttgc      2820
     taaaggattt acccaaaagt ttggtataga ttatgaagaa acttttcacc agtagtaaga      2880
     tgtagtactc ttagagtact catcagttta gctgtaaatt tggatcttgc gatttatcat      2940
     tttgatgtaa aaactgcctt tttgtatgga gatttgaagg aaaccattta catgaagcaa      3000
     ccagatggtt ttacatcaaa aggtaatgaa gataaagtct acaaactatg taaggccatt      3060
     tatggtttaa aacagtctgc taggcagtgg aatgaaaagg caaaaagtgt gcttttagac      3120
     ctaggttatg ttgctaatac tgatgaagat tgtgtgttca ttaaaaagtc aggtaaagat      3180
     gttgcaattg ttgctttgta tgtggacaac ttttttattt tttgtaaaaa caaggagatg      3240
     aaaaacaagt tacatcaggg attatctgaa cattttgaag tgaaagatct aggagaagca      3300
     aagtcatgtc tgggaatgtg tataaccaga aactggaagg aaggtaattt aaaacttgac      3360
     cagaagggtt acattgcaga tgtgctgaaa cgatttaata tgcttgagtg tactcctgtg      3420
     ggaactccta tggaagccgg attaaagctt tgggaagtgc agggagacaa gattaatgtg      3480
     ccatatcaag aactagtggg ctgtttgctg tatatcagta ttaatacaag acctgatata      3540
     tgttatgcag ctagtatttt aagtcagtat aatagcaagt ttactagtgt acattggaag      3600
     gcagcaaaga gagtccttcg ttatcttaaa ggtacaatga actatggcct tgtgttcaac      3660
     aaaggagatg ttgaagatct gcatgtaact ggttttgttg actcaaattt tgtagatgat      3720
     ttgactaccg gcctgtcaca atatggaagt gtttttctct tagggagaaa cttggtttca      3780
     tgggagagca agaagctaaa ggatgttgca acttctacta ctgaggctga atatgctgct      3840
     ttgaattctg caggcaaaga agcagtgtac ttgagatggc tgataggggg tttgctacat      3900
     aagaagcagc aagatcctgt aacaatattt caagacaacc agagttcgat taaactgtca      3960
     gaaaatcctg tgctgcattc taggctgaaa catgtttgtg ctaaagggca ttttattcga      4020
     cagtgtgtca aaagaaatga ggtggttgtt aaatatttgc agtcaaagga aatgcctgct      4080
     gatgttctaa ctaagccact tgctagaggg cagcacatgt atctaatcga gaaattgaaa      4140
     ttgtcaccag attaagtggt ag                                               4162
//
ID   Copia-7_LMi-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-197
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3086-3086 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 197 BP; 56 A; 25 C; 32 G; 84 T; 0 other;
     tgttgtgatg ttagtaatct ggtgactaat ttattccatg aaatgcacat ctaagacatg        60
     tagattattc ttagatgtta tagttcttct tttgtctttc gtcagcttta tgtgtaaatg       120
     gttatgtact gttattgaat acaagtttta caacattata atcttgtcta gtgaactgtt       180
     ttttagacaa actaaca                                                      197
//
ID   Copia-7_SI-I repbase;    DNA;    INV; 4127 BP.
XX
AC   AEAQ01011831;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_SI_;
KW   Copia-7_SI-LTR; Copia-7_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4127
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011831; Positions    4574     448.
XX
CC   Positions [1541-2038] - Integrase core
CC   'TAGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..2518
FT                 /product="Copia-7_SI-I_1p"
FT                 /translation="MATNNQDDVIQIEKLKDSENFMIWKFQVTIVFKSLGL
FT                 YDIVTGVLALAEGMTEQAKAEWIRKDARAQKIIITSIEKQPLTHVLVCKTS
FT                 QEMFQRICAMYERDTEQQKCILLQEFFNFSYQKGTDIATHVSKLENLAYRL
FT                 KVLNADIDDSMLMSKILVTLPPEKYKHFACAWESTAQDQTTLSNLTSRLLS
FT                 EENRLSVTDARQDAVAFKATEKKCHKCNNTGHLARACKVNKGNIQDMRCFK
FT                 CNGRGHIAKFCKKEDATGGTTKCNICKKFNHEEKDCYFRKNKTDDQTSTKD
FT                 KVTFLASNCKTNKWILDSGSSSHITNDKNMFKNMRKIESEIGTAKKSQILK
FT                 AEGIGTVETDKCVLNKVLYVKDLSKNLLSVNEITKNGGKVIFTKEKAEIWK
FT                 DNIKLIGFRNGDGLWTVNLNQESMDSALLTRENKMAIQWHQKLGHLGKENM
FT                 KKLQNISEGMKITDKSLDVLNNVCETCLKAKQTRIPFGEKRTRAKRPLEIV
FT                 HTDVCGPIDPITWDKKKYMITFIDDFTHFVMVYLIEGKYEVAGTVKEYANQ
FT                 VETKWNLKISKLRCDNGREYVNEELKIWCRRRGTILDVTTPYTPQLNGKAE
FT                 RMNRTLIEKTRALLTDAQIDKSFWGEAVRTAAYLTNRSPTDAVKGTPLENW
FT                 TSQKPDLTRLHIFGCNAYTKTLTPLKKLDDRCKSYIFVGYAPNGYRLYDEE
FT                 RRKIVISRDVKFKEEITSKNKSAKINIHAEEEQTEKQEEIENNMENISGSE
FT                 EEYQDADLEIEEEESQEETQEDTQEEQEELGRGKRKRKIPDRYKDYVYLTY
FT                 REATTGPDKEN"
FT   CDS           2847..3968
FT                 /product="Copia-7_SI-I_2p"
FT                 /translation="MELPDGYNCNNKICRLNKALYGLKQASLRWNQRFTTF
FT                 LKTKGLKPTKAEPCIYRTDDNTLILAIYVDDGLIIGQNRQSIDKLLSNLGK
FT                 EFHISVFKDIKSFLGIEIQQDKEGLKLLQLNYADHVVKMFNMKNSKPVNTP
FT                 ILTNDDRSEEINEVFPYRESVGSILYLSSKTRPDLAYAAGYASRHLDKPYK
FT                 QDVANIKRILRYINATKNLGISYKVNNDKNKEELIGYTDSDYAGDVETRKS
FT                 TTGFVIMYCNGPISWCSKKQSVVALSSTEAEYIAATECCKEILYLKFLIEE
FT                 LTGKSVKATLNIDNQSTIHLIKNGIGNKRSKHIDIRYRFINEKVAEGLISV
FT                 NYCSTDTQLADIFTKALGQNKFEIHKKRLLN"
XX
SQ   Sequence 4127 BP; 1654 A; 637 C; 874 G; 962 T; 0 other;
     ggttatgggc ccaggcgtca gaggcgtaaa atcaacgtaa aaagaaaggg taaaacgaga        60
     gaggctagct gtacgaaaaa tggcgacgaa caatcaagac gacgtgatac agatagaaaa       120
     actgaaggat agcgaaaact tcatgatatg gaagtttcaa gttacgatcg tattcaagtc       180
     tttagggtta tatgatattg taacgggagt cttagcatta gcagaaggaa tgacagagca       240
     agcaaaagca gaatggatcc ggaaagacgc acgtgctcag aaaataataa tcacgtctat       300
     agaaaaacag ccgttgactc acgtactggt atgtaaaacg tcacaagaaa tgttccaaag       360
     gatttgtgcc atgtacgaaa gggatacaga acagcagaaa tgtatcctac ttcaagaatt       420
     tttcaatttt tcataccaga aaggaacaga tattgctaca cacgtgagta aacttgaaaa       480
     tttagcatat aggttaaaag tcttaaatgc ggacattgat gactctatgt tgatgtcaaa       540
     aatacttgtg actctgccgc ctgagaaata taaacatttt gcatgtgcct gggaatccac       600
     cgctcaagac cagacgacgc tttcaaatct tacgtctcga ttgctctctg aggagaacag       660
     actttcagtg accgatgcga ggcaggatgc ggtggcgttt aaggcgactg agaagaaatg       720
     ccacaagtgc aataataccg ggcacctagc tagagcgtgc aaagtaaata aaggtaatat       780
     tcaagatatg cgctgcttca aatgcaatgg tcgaggtcac atagcaaagt tttgtaagaa       840
     ggaggatgct actggaggca caaccaagtg taacatatgt aaaaagttca atcatgaaga       900
     gaaggactgt tactttcgca aaaacaaaac ggatgatcaa acaagtacaa aggacaaggt       960
     aacgttcctg gccagcaact gtaaaacgaa taaatggatt ctggattcgg gctcgtcgtc      1020
     gcatataaca aatgacaaga atatgtttaa aaatatgaga aaaatagaat cagaaatagg      1080
     aacagcgaag aaatcacaaa ttttaaaggc tgaaggaatt ggcaccgtag aaacagataa      1140
     atgtgtactc aacaaagtac tatatgttaa agatctaagt aaaaatttat tatcagtcaa      1200
     cgaaattaca aagaacggag gaaaagtaat tttcactaaa gaaaaagcag agatatggaa      1260
     agataacata aaactgattg gttttcgcaa cggagatggt ttatggaccg taaatttgaa      1320
     tcaagaatct atggacagcg ctcttctgac acgagaaaac aaaatggcta ttcaatggca      1380
     tcagaaattg ggacatctag gaaaggaaaa catgaagaaa ctacaaaata tatcagaagg      1440
     tatgaaaata acagataaaa gcttggatgt cttaaataat gtatgtgaga cgtgtcttaa      1500
     agctaaacaa acgagaatac cttttggaga gaagaggaca agagcaaaga gaccactgga      1560
     gatcgttcac accgatgtgt gcggaccaat agatcctatt acttgggata agaagaaata      1620
     tatgataacg ttcatagacg actttacaca ttttgttatg gtctatctca tcgagggaaa      1680
     atatgaagtg gcaggtacag tgaaagaata cgcaaatcaa gtagaaacga aatggaattt      1740
     gaaaatctcg aaactaagat gcgacaatgg acgcgagtac gtcaatgaag aactcaaaat      1800
     ctggtgtaga cgaagaggaa caattctaga tgttacaacg ccttataccc cacaacttaa      1860
     tggaaaggca gaacgtatga acagaacgtt aattgagaaa acgagagcct tacttacaga      1920
     cgctcaaata gacaaaagtt tttggggaga agcagttcgc actgctgcat atttaacaaa      1980
     tagaagcccc actgatgcag ttaaaggaac accgttagag aactggactt cacaaaagcc      2040
     agatttaaca agattacaca tctttggttg taacgcctac acgaagacac taacaccatt      2100
     aaaaaagctg gatgatagat gcaagagtta catcttcgtt ggatatgcac caaatgggta      2160
     ccgactctac gatgaagaaa gaagaaaaat agtaatttca agagatgtaa aatttaaaga      2220
     agagataaca tctaaaaaca aatcagctaa aataaatatc catgcagaag aagaacaaac      2280
     tgaaaaacaa gaagaaattg aaaataacat ggaaaacata tctggaagcg aagaagagta      2340
     tcaagatgca gatctagaga ttgaagaaga ggaatcacaa gaagaaacac aagaagatac      2400
     acaagaagaa caagaggaac ttggtcgtgg aaagcggaag aggaagattc cagatagata      2460
     caaagattat gtgtatttaa catacagaga agcgacaact ggaccagaca aggaaaatta      2520
     ggaaaaaagc gatagaagaa gaaaagaagt cgctagaaga gaacaatacc tggaagacag      2580
     tagatagaac tgaagcaaaa agtaaaaaaa ttttgagtaa caaatgggtc ttcaaaataa      2640
     aggatgatgg aagatataag gcacggttgg tggtgagagg atgtgaacaa cgccacggaa      2700
     tagactacga ggaaacgttt agtcccgtag taaatagcag ctcccttcga acactacttg      2760
     cgattgccac aaaaagaaga gactacattg tcaaattcga cattaaaact gcattccttt      2820
     atggaaattt agatgaagag atctttatgg aactgcctga tggatataat tgtaacaata      2880
     aaatatgcag acttaacaag gctctctatg gactcaagca agcttcattg agatggaatc      2940
     agcgcttcac taccttcctt aaaaccaagg gactaaaacc gaccaaagca gaaccgtgta      3000
     tatataggac tgatgacaac accttaatat tggctattta tgtggacgat ggactcatca      3060
     tagggcaaaa tagacagtcc atagataaac tactcagtaa tttaggtaag gaatttcata      3120
     taagcgtatt taaagatata aaatcttttt taggtataga aatacaacag gataaagaag      3180
     gtctcaaatt attgcaatta aactatgcgg atcatgttgt aaaaatgttt aacatgaaaa      3240
     attcaaagcc tgtgaatact cccattctaa ccaatgatga cagaagcgag gaaatcaacg      3300
     aagtttttcc atatcgagag agcgttggga gtatattgta tctttcgagt aaaacgagac      3360
     ctgacctggc ctacgctgca ggatacgcaa gtagacattt agataaaccg tataaacaag      3420
     acgtagcaaa tataaaaaga atattaagat atataaacgc gactaaaaat ctaggtatta      3480
     gctataaagt aaataatgat aaaaataagg aagaattgat aggctataca gactccgatt      3540
     acgcaggaga tgtagaaact cggaaaagca caaccggttt tgttattatg tattgtaatg      3600
     gtcctataag ttggtgctcc aaaaaacagt ctgtagtagc gttatctagt accgaagcgg      3660
     agtatatcgc ggcgacggaa tgttgcaaag aaattttata tcttaaattt ttaattgaag      3720
     agttaacagg caaatccgtt aaagcgactt taaatatcga taaccaaagc actattcatt      3780
     tgattaaaaa cggtatagga aataaaagaa gcaaacacat agacataaga tatagattta      3840
     taaatgaaaa agttgctgaa ggactgataa gcgtaaacta ttgctctact gatacacaac      3900
     tcgcagatat ttttaccaag gcattaggcc aaaataaatt tgagattcac aaaaagagat      3960
     tgttaaacta agttaagaag aaaactataa atctagccta agtagttata agagtctata      4020
     gtaatagtta caagagttta tagtaatagg tataagaatt tacagtaata gttataagag      4080
     ttacgaaaag acttgaagtg caggacaatt taacaattaa ggggaag                    4127
//
ID   Copia-7_SI-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   AEAQ01011831;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_SI_;
KW   Copia-7_SI-I; Copia-7_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01011831; Positions     447     164.
XX
SQ   Sequence 284 BP; 59 A; 61 C; 55 G; 109 T; 0 other;
     tgttgagaat aattgttaag tatgttcatt tgtatgtttg gcgccataag cgtgtagtct        60
     gcgtgcgata gtgtcgctag tgatcgacgc gcatgcgttg ccctagtcgt tcgttttttt       120
     cgtttttttt ctctctctcc tctctgacac acgcttgcct cagaacgctg ccttttgtgt       180
     acaactctct attctctggt tgttggaata aacgcttttc tatttgctct aataaagtgt       240
     gtctaattaa aaacctctga ccattcgata agcataatct atca                        284
//
ID   Copia-7_TrVa-I repbase;    DNA;    INV; 4812 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-7_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4812
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 245-245 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..4673
FT                 /product="Copia-7_TrVa-I_1p"
FT                 /note="gag, zinc finger, integrase, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MELKMESDYGSGNVTKLRGCENFQVWKFEITVHLDAY
FT                 GILEIVDGTTKRPKIPAGAKDDESATLKKKANEWMRQDKLAKKVIISTVDK
FT                 PILTHLMYFATSNEMWNKLQSLYGGAGEEQTIKLLNEFHTVSYTKGTSVMS
FT                 HVSKLQNIYHQLMYNDQNSITENMLISKILCTLPDSYNNFYESWRLLTPKT
FT                 DKTLANLVAKLQEKENDMKPNKNEQAVAFSAKRFSGKNDNSKAEGTSKPQI
FT                 KCHGCKKLGHIKRNCPQSKNGGSVNSKVCSVCKKMGHTESTCFFKPGGKYD
FT                 PNKQSQENKVSFFVDNHNSAENCDNWVVDSGCTGHITNNEECLKNVREIKC
FT                 EVGVAKKGSSLKATKKGELEAEACILSDVLYSADLTRNLLSVNAVVNNGGE
FT                 VNFNKSGVTIMKNGQVILTGNRETNGIFSVNFATKNGAEALIASNSGVKPN
FT                 WHLRMAHLSCEKLQELSKIAVGLDLGTNSDVKYNLKNCDVCLRSKFSKKPF
FT                 ENKRERASRVLELLHTDVCGPIEPVTFDSKAYFVTLTDDFTGLTMTRLLAN
FT                 KAETCEEIIGMILEMETKWNVRSVKIRCDNGGEYTSHIFKDWCKQRGTVLD
FT                 YAPPYTPELNGVAERKNRTIMDKARALMAECQEEKFLWGEAVLASTYIMNR
FT                 SPKSKMKKTPYENWFGKPPDLANVRIFGSIAYAKCTGHLKKLDDRAQKLLF
FT                 VGYAPGGYRLFNPETSKITVSRNVRVIESEFRVNSSLNRTSRTSVKLAISG
FT                 SDSENEGEVREDGAGHGEPNEVEQSATEASRESDDSFIDEAAGDTTLVGDT
FT                 EWEPTTSDEDASDANTTMIEVDGTRRYPDRRRLPATRYEALVTEREDHDEP
FT                 RTVSEALESPKWRAAMQAEYNSLEKNKTWVLTDLPKGQKAIKCKWVFKLKR
FT                 GQDGTPERYKARLVAKGFSQIRNVNYFETYSPVVRIATIRYLIAMSIKKGL
FT                 KVNHIDVDTAFLHGELEEEIYMEPPEGFKNQNTVGKVCLLLKALYGLKQAS
FT                 RAWYIKIDKILINFGLKKSELEGCVYFNVTPTSILIVALYVDDLVILFNDN
FT                 DQKEKLKAKLQSEFEIKDLGQVKHCLGINFDWNTEQNSVALNQAQYIKALL
FT                 NNFNMSDCNPSGTPLEVKTDKSDEGKEVLTDVPYRNLIGGLMYLAVCTRPD
FT                 ISHAVSYLSQFNDCPTTSTWKQAKRVLRYLKGTIYMGIVFENSNQALVGYV
FT                 DADWGGDVIDRRSYTGFVFKLCDGPIVWESRKQKTVAQSSTEAEYMALTES
FT                 SKEAVFLRNLQVEIFGETPKIKMFCDNRGAVDLASNAGFRAKTKHIEIKHH
FT                 FIRQVLSAKIVELEHTSTEHMVADMLTKALPKEKHNFCLRNTLKDTTTC"
XX
SQ   Sequence 4812 BP; 1614 A; 883 C; 1086 G; 1229 T; 0 other;
     ggttatgggc ccagcccacg taccaaaagt gctctctgcc ctgtaggtgc cctagatatt        60
     tcgcggagtg tccgaaagtt tttttagtcg tcgaagtgcg gaagtgtaaa cataaatttc       120
     ctcgttttct ttttcgtgtt cgaattttcc cacagttttt aaaataaaaa tgggctggtt       180
     cgatgccaac aactcaaatc aaaacgcgat atctataaaa agtgatttcg acttacacga       240
     tttagtatta tatttcatgt ttttctgtct tgctattgtt cttgtggtgt actacgtatt       300
     acacaagtgt agaaaaatca aaaaggaact tgcggcggcg agacgtaata atgatgcggc       360
     agtctgataa aatcgcgcta gtgactctag tttcatacga aataaataaa tgtaaaacat       420
     accagtgttt ttggttaaaa tataaccagt gtttttggtt aaaatataac cagtgttttt       480
     ggtagaataa aaaatataac cagtgttttt ggttaaaata taaccagtgt ttttggttaa       540
     aatataacca gtgtttttgg ttaaaatata accagtgttt ttggttaaaa atggaattga       600
     aaatggaaag cgactacggc agtggtaatg ttacaaaatt acgagggtgc gaaaacttcc       660
     aagtatggaa gtttgaaata acggtgcact tagacgcgta tggtattctg gaaatagtgg       720
     acggaaccac gaaaaggccg aaaattcccg cgggagctaa agatgatgaa agcgcgacac       780
     taaagaaaaa ggccaacgag tggatgcgcc aagataaatt ggcaaagaaa gtgataattt       840
     ctactgttga taaaccgatt ttgacccatc tcatgtattt tgctacttca aatgaaatgt       900
     ggaacaaatt acaaagtctc tatggaggtg caggagagga acaaacaatc aaactgctga       960
     atgaatttca cactgtgtcc tacacaaaag ggactagtgt catgtcgcat gtaagtaagt      1020
     tgcaaaatat ttatcatcaa cttatgtaca atgatcaaaa tagtatcacc gaaaacatgc      1080
     tgatatccaa aatactttgc actctacctg actcctacaa taatttttat gaatcatggc      1140
     gtttgctgac tccaaaaaca gacaaaactt tggcgaactt agttgccaaa ttacaagaaa      1200
     aggaaaacga catgaagccg aacaaaaatg aacaagcggt ggctttctcc gcaaaacggt      1260
     tctccgggaa aaacgataac tccaaagcag aaggaacttc gaaaccacag ataaagtgtc      1320
     atgggtgtaa aaaactagga cacatcaaaa gaaactgtcc tcaaagtaaa aacggaggct      1380
     cagtaaactc aaaagtgtgc tcggtctgca aaaagatggg tcatactgaa agcacttgtt      1440
     ttttcaagcc tggaggaaag tacgacccaa acaaacagtc acaagaaaac aaggtatcgt      1500
     tttttgttga taatcataac agtgcggaaa actgtgataa ctgggtagtt gactcaggat      1560
     gcacagggca cataacaaat aatgaagagt gtctcaaaaa tgtccgtgaa ataaaatgtg      1620
     aagtcggcgt tgccaagaag ggcagctcct taaaggcaac aaagaagggg gagctcgaag      1680
     ccgaagcgtg catacttagt gatgttttgt attcagctga tcttacaaga aatcttttat      1740
     ctgtcaacgc tgtggtcaac aatggaggag aagttaactt caacaaatca ggagtgacta      1800
     taatgaaaaa cgggcaagtc attctcaccg ggaatcggga aaccaacggg attttttcag      1860
     tgaatttcgc tactaaaaat ggggccgaag ctctgatcgc atcaaattcg ggagtgaaac      1920
     caaattggca tcttcggatg gctcatttga gttgtgaaaa acttcaggaa ctttcgaaaa      1980
     tagcagtcgg tttagaccta ggaactaaca gtgatgtgaa gtataatcta aaaaattgtg      2040
     atgtctgtct gagatccaag ttttctaaaa aaccatttga aaataaacgt gagagggcaa      2100
     gtcgagtgct cgaacttctt cacacagacg tttgtggtcc tattgagcca gtgacatttg      2160
     actcaaaggc ctatttcgtg actctaacgg atgactttac gggacttacg atgacacggt      2220
     tactcgcgaa caaagctgaa acctgcgaag aaataattgg gatgattctc gaaatggaaa      2280
     ctaaatggaa tgtaaggtcg gtcaagatac gttgcgataa tggtggtgag tacacaagtc      2340
     acattttcaa agactggtgt aaacaacgag gtaccgtcct tgactacgct ccgccataca      2400
     cgccagaact taatggcgtc gctgaacgca aaaaccgcac catcatggac aaagcccgcg      2460
     cgcttatggc tgaatgtcaa gaagaaaaat tcctgtgggg agaagccgta ttggcttcaa      2520
     cgtacataat gaaccggagc cccaaatcta agatgaagaa aacgccatat gaaaattggt      2580
     tcggaaaacc gccagatttg gcaaatgtgc ggattttcgg cagtatagct tacgcgaagt      2640
     gcacgggaca tcttaagaag ctcgacgata gagctcaaaa actgttgttt gttggctacg      2700
     cgcctggtgg ctacaggttg ttcaaccctg aaacgagcaa gataacagtg tcgcgaaatg      2760
     tgcgtgtcat tgaatctgaa tttcgcgtga attcatcgct aaatagaacg agtcgaacga      2820
     gtgtaaaact ggcaatctct ggttcagata gtgaaaacga aggtgaagtg cgcgaagacg      2880
     gcgctggtca cggcgagccg aatgaagtag aacaaagtgc aaccgaagca agccgtgaat      2940
     cggacgattc atttatcgac gaagcagcag gtgacacgac gctggtcggt gacacggagt      3000
     gggaaccgac aacctcagac gaagatgcaa gcgatgcaaa tacaacgatg attgaagtag      3060
     atgggacgcg gcgctaccct gacagacgga ggctccccgc aacccgatat gaggctttgg      3120
     tgacagagag ggaagatcat gacgagccgc gcacagtgag cgaggcactt gaatcaccga      3180
     aatggcgggc ggccatgcaa gctgagtata attcacttga aaaaaataaa acttgggtgt      3240
     taactgacct tccaaaaggc caaaaagcga taaaatgtaa atgggtgttt aagcttaaga      3300
     gagggcagga tggcacacca gagagatata aggcaagact tgttgccaaa gggtttagcc      3360
     agatcagaaa cgttaattac tttgaaacat actccccagt tgtcagaatt gcaacaattc      3420
     gatatttaat tgctatgtca ataaagaagg gtctaaaagt aaatcacatt gacgtagaca      3480
     cggccttcct tcatggagag ttagaagagg agatatatat ggagcctcca gaaggattca      3540
     agaatcagaa cacagtaggc aaagtttgtc tcttgctcaa agctctatac gggctgaaac      3600
     aagcatcaag ggcctggtat atcaaaattg ataaaattct gattaatttt ggactaaaaa      3660
     aatcggagct agagggatgt gtctatttca atgtgactcc cacatcaatc ttaattgtgg      3720
     cattgtacgt agatgacctt gttattcttt ttaatgataa tgaccaaaag gaaaaattga      3780
     aagcaaaact ccaatcagag tttgagataa aagacttagg tcaagttaaa cactgtttgg      3840
     gcataaactt tgattggaat actgaacaga atagtgtggc cttaaatcag gcacaatata      3900
     taaaagcttt gcttaataat tttaacatgt ctgactgtaa cccatcaggg acacctcttg      3960
     aagttaaaac tgataaatca gacgaaggga aggaggtatt gactgacgta ccttatcgaa      4020
     acctcattgg tgggttaatg tacttggcag tgtgtacccg accggatatc tcacatgcgg      4080
     tcagttattt aagccaattt aatgactgtc caacaacttc tacttggaaa caggctaaga      4140
     gagtcctgcg ttatctaaaa gggactatat acatgggcat tgtttttgaa aactccaatc      4200
     aagcattagt ggggtacgtt gatgcagatt ggggaggtga cgtcatagac aggcgttctt      4260
     acacaggctt cgttttcaaa ctgtgcgacg gacccatagt atgggaaagt cgcaaacaaa      4320
     agaccgtcgc acaatcttcg actgaagccg aatatatggc ccttactgag tcttcaaaag      4380
     aagcagtgtt tttgcgtaat ctgcaagtcg agatttttgg agagacaccg aaaattaaaa      4440
     tgttttgtga caaccgtggt gcggttgatt tggcaagtaa cgcaggtttt agagcaaaaa      4500
     caaaacatat tgagataaaa caccatttca tacgccaagt attgagcgca aagattgttg      4560
     aactagagca tacctcaacc gaacacatgg ttgccgatat gctcacaaaa gcgctaccta      4620
     aagaaaaaca taacttttgc ttgagaaaca cactcaagga cacaaccact tgctagggtt      4680
     gttcactcaa ttatttttag tctataagta tataaacctg attttcatta ttttcgctgt      4740
     accactaaat cttcattgtt atattactat attttttgta ttaataaaac ttgtaccaag      4800
     tttaagagag gg                                                          4812
//
ID   Copia-7_TrVa-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-7_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-323
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 228-228 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 323 BP; 103 A; 58 C; 63 G; 99 T; 0 other;
     tgttgagagt ggtaaacttg gcactcagtg tcacgtagga aaggaatgaa agaagagaca        60
     gagaaagata gaaatgaaaa atctttgtca gcaataaacg gcatgcatgt gtgcaactgt       120
     gtttgcccct ctctgcgctc gtcttttttc tttgttcagt tagtcgtagt ctagattcat       180
     acccaatgga atctattttg taatccgtcg tttcatactt ataaataata aacacaaaat       240
     gcctccgctt cgaggtagtc cgaagtgtta aaactgtttt caaaatattc ttccgaattg       300
     caagttagat ataaaatcca aca                                               323
//
ID   Copia-81_AA-I repbase;    DNA;    INV; 4115 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-81_AA_;
KW   Copia-81_AA-LTR; Copia-81_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4115
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2632-2632 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1340-1876] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..4105
FT                 /product="Copia-81_AA-I_1p"
FT                 /translation="MPSTPTSSSGGSSSLPPIERLAGRENWSSWKFAAKTF
FT                 LQLEGLWEAVKPKKNEDGTFEAVEEKKDLQARLKLILLLDPAIYVHIEDAE
FT                 SARAAWEKLETAFEDKGLSRQIGLLHKLIKSDLDSCGSMEEYVNQVISTAN
FT                 QLNSIGFKLPDLWVGMILLAGLPDDYRPMIMALENSGVAITGDFVKTKLLQ
FT                 ERPLRSNQQNSQAFATNKRKENFKKQQPTSSKGPQCRKCGQYGHIARVCKD
FT                 SRKGETFCTVLSTFGKGDANDWIFDSAAYAHMTSNKQLLDSIEKASGKVVA
FT                 ANGGTMDIVACGNANLQPKCRGDQVSVTASGVQLIPGLTANLLSVSRIVQK
FT                 GYSVEFNNDGCKVHNGLGELVATGSHSNHQFKLDQVVSKSNEVLSCNAAGS
FT                 FELWHKRMGHLGAGNLKKLAGGLATGIVLNQDASADCRICPMGKQAKLPFP
FT                 KNGSRAADVLQLVHSDISGPMEMNSIGGNRFYITFIDDKTRRMFVYFLKTK
FT                 SEEEVFAVFKRFHAMAERQSGKKLKAIRTDNGKEYLNKSFQGYLQREGIRH
FT                 ETTNEYTPQQNGLAERANRTIVEMARCLLFEGKLSKGFWAEAVSTAVYLIN
FT                 RSPTRGHNLTPEEAWNGRKPNLSHLRVFGTKAMVQVPKQKRRKWDPKSHEC
FT                 VLTGYDEETKGYRLYDPKKKSTIVSREVIFLDEGVSFDAMSPAEPLKRPTT
FT                 FVRLDFEEPVPSPTLERPVAEPEDPMIDDEAETDDDFEECVSSDDSGTSTA
FT                 TLTDPVLPSRQSSQPPRSKVLRRSEREHVLPGKYRDFHVDGTGLPGLPLPQ
FT                 PISDDDSSDFHGFPDDDSTGGPSDDDGLVAITSGMDGELGDDPASHQEALA
FT                 RTDSDAWRRAMQEEFDAQVANNTWTLTPLPKGRKAIKCKWVFKTKCDADGN
FT                 PTRRKARLVVKGYSQRKGVDYDETYAPVVRYSSLRYLLALAVKHDLAIDQM
FT                 DAVTAFLQGDLDEEIFMEQPPCFVDGKKKTMVCKLNKALYGLKQSSRVWNH
FT                 KLDAALRRFGLTPTKYDPCVYIGFRGGKILIVAIYVDDLMIFSNDRMWTKK
FT                 LKEQLSSCFRMKDLGQAQHCLGIRIERKNDSIALDQESYVESVLKRFSMDQ
FT                 SKPVKVPMNYSEKLTKEASPKDDDESALMKDVPYQEAVGCLMYLAQSTRPD
FT                 ILFAVNTLSRFNNNPGLKHWNAVKHVLRYLRGTSGFKLVYKKDADSSIVGY
FT                 CDADWGSDLDERKSTSGNVFLAQGGAISWMCKKQPTVALSTCEAEYMSVSA
FT                 AVQEASWWRGLSALLDNNDDPIEIRCDNQSCIAIAKNGGYNPRTKHIDIRH
FT                 HFIKDALSRGVVQLAYVGTEEQVADGLTKPLQRTKFEECRQMMGISAA"
XX
SQ   Sequence 4115 BP; 1117 A; 989 C; 1159 G; 850 T; 0 other;
     ggttatgggc ctgtcgcatt agaaaatgcc atcgactcca acttcaagtt ccggcggatc        60
     ttcaagcctc ccaccaatcg agcgattggc tggacgagaa aattggtcgt catggaagtt       120
     cgcagcgaaa acttttcttc agctggaagg actttgggaa gccgtgaagc ccaagaaaaa       180
     tgaagacgga acatttgaag cggtcgaaga gaaaaaggac cttcaagccc gattgaagct       240
     gatcctgctc ctggacccgg caatctacgt ccacatcgaa gacgccgaat cggcgcgtgc       300
     ggcgtgggaa aaattggaaa cggcgttcga agacaagggg ctgtctcggc aaatcggctt       360
     gctccacaag ctcatcaagt cggatctgga ctcgtgcggc tcgatggaag agtacgtgaa       420
     ccaggtaatt tcgactgcga atcagctgaa cagcatcgga ttcaagctgc cggatctgtg       480
     ggttggaatg atcctcctgg ctgggcttcc agacgattat cgacccatga taatggcgct       540
     agaaaattct ggtgtcgcca taacggggga cttcgtgaaa accaaacttc tccaagagcg       600
     accgttgcgt agcaaccagc aaaacagtca agcgttcgca accaacaaac ggaaggaaaa       660
     tttcaaaaaa cagcagccta cttcatccaa gggcccgcaa tgcagaaaat gtggtcagta       720
     cggacacatc gcaagggtct gcaaggattc caggaagggc gaaacgtttt gcacggtgct       780
     ttccacgttt ggaaaaggtg acgcgaatga ctggattttc gactcggcgg cgtatgcgca       840
     catgacgagc aacaagcagc ttttggacag catcgaaaag gcaagcggta aggtggttgc       900
     agcgaatgga ggtacgatgg acatcgttgc ctgtggcaat gcaaaccttc aaccgaagtg       960
     cagaggcgat caagtcagcg tgaccgcgag cggcgtgcag ctgattccgg gattgacggc      1020
     aaaccttctt tcggtgagca gaatcgtgca gaaggggtac tccgttgaat tcaacaacga      1080
     tggttgcaaa gtgcacaatg gccttggcga gctggtggcg actggtagcc actccaacca      1140
     ccaattcaag ctggaccagg tggtgagtaa atcaaacgaa gttttatcgt gtaatgctgc      1200
     aggaagtttt gagctctggc acaaacggat gggtcatctc ggtgccggaa atctgaagaa      1260
     gcttgctggt ggtttggcaa ccggtatcgt gctgaaccaa gacgctagtg cagattgtcg      1320
     aatctgccca atgggaaagc aggcgaagct accatttccg aagaacggat cccgtgcggc      1380
     ggacgttttg cagttagtcc attcggatat cagcggtccg atggaaatga actcgattgg      1440
     cggtaatcgg ttctacatca cgttcatcga tgacaagacg aggcgtatgt tcgtgtactt      1500
     tctgaaaaca aaatcagaag aagaagtatt tgcggtcttc aagagattcc acgcgatggc      1560
     ggagcgccaa agcggcaaga agctcaaagc gatccggact gacaacggta aggaatatct      1620
     gaacaaaagt tttcaaggat acttacagcg agaaggcatc cggcacgaga cgacgaacga      1680
     gtatactccc cagcaaaacg gcttggcgga gcgcgccaac cggacgatag tagaaatggc      1740
     acggtgtcta ctattcgaag gcaaattgtc gaaaggcttc tgggcggagg ccgtatctac      1800
     agcagtgtat ctcatcaacc gatctccgac tcgtgggcac aatctgaccc ccgaggaagc      1860
     ctggaatgga aggaaaccca acctttcaca tctacgtgtg tttgggacga aagcaatggt      1920
     tcaagttcca aagcagaaga gacgcaagtg ggatcccaaa tcccatgaat gcgttttaac      1980
     gggctacgat gaagaaacaa aaggatatcg cctgtacgat ccgaagaaga agtcaaccat      2040
     cgtgagtcgg gaagtaattt tcctggatga aggtgtttca ttcgacgcga tgtctccagc      2100
     ggaaccactt aagagaccaa caacgttcgt tcgattggac ttcgaggagc cggttccctc      2160
     ccccacactg gagaggcctg ttgcggaacc agaagatccg atgatcgatg acgaagcgga      2220
     aacagatgac gacttcgaag aatgtgtttc aagcgatgat agcggcacaa gtaccgcaac      2280
     gttgactgac cctgtgctcc cttcgcgaca atcttcacaa ccacctcggt caaaggtgtt      2340
     gaggcgcagc gaacgggagc acgttttgcc aggcaagtat agagactttc atgttgacgg      2400
     cactggccta cccggtttac cacttccaca gccaatctcc gacgatgatt cgagtgactt      2460
     ccatggtttc cctgatgacg attccactgg tggaccgagc gatgacgatg gtcttgtggc      2520
     gattacatct ggcatggatg gcgaattagg agatgatccc gcttcgcatc aagaagcgct      2580
     ggctcggacg gatagcgacg catggcggcg tgccatgcag gaggaatttg atgctcaggt      2640
     ggccaacaac acctggaccc tcaccccgct ccccaagggt aggaaagcta tcaaatgcaa      2700
     gtgggtattt aaaacgaagt gtgatgctga cggaaacccg acccgacgta aggctcgttt      2760
     ggtcgttaaa ggctactcgc agcgaaaggg ggtagattac gatgaaacgt atgctcccgt      2820
     cgttcgctac agttcgctgc gataccttct cgcactagcg gtcaagcacg atctggcgat      2880
     agaccagatg gacgcggtta cggccttcct gcaaggggat ctcgacgaag agatattcat      2940
     ggagcagcct ccatgcttcg tagacggaaa aaagaagacg atggtgtgca agctgaacaa      3000
     ggcgttgtat ggcttgaagc agtcgagccg agtttggaac cacaaactag atgcggcgct      3060
     acgacgtttc ggactgacac caacgaaata cgacccgtgt gtctacatcg gcttccgagg      3120
     aggcaagatt ctgatcgttg ccatatacgt cgacgacctg atgatcttca gtaacgaccg      3180
     gatgtggacg aagaagctga aggaacagct atccagctgc ttccgtatga aggatctggg      3240
     acaagcgcaa cactgccttg gaatccggat cgagaggaaa aacgactcca tcgctttgga      3300
     tcaagaatcg tacgtagagt cggttctgaa gcggttcagc atggatcaat ccaaacctgt      3360
     gaaagtaccg atgaactaca gtgagaagct tacgaaggaa gcgagcccga aggacgacga      3420
     tgaatccgct ctgatgaagg acgttccgta tcaggaagct gtcgggtgcc tcatgtattt      3480
     ggcgcagagc actcggccgg acatactttt tgcggtgaac actctcagca gattcaacaa      3540
     caatccggga ctcaagcact ggaacgcggt gaagcacgtt ctgcgttacc tacgtggtac      3600
     ttccggcttc aagctggtct acaagaagga tgctgattcc agtattgtcg gctactgtga      3660
     cgccgattgg ggatccgatc tagacgagcg gaaatcaacc agcggcaacg tgtttttggc      3720
     ccaaggcggt gcaatttcgt ggatgtgcaa gaagcaaccc acggttgcat tatctacctg      3780
     tgaagcggag tacatgtccg tatcagccgc tgtacaggaa gcatcatggt ggcgtggact      3840
     ttcggcgcta ctggacaaca acgacgaccc catagaaatc cgttgcgaca accaaagctg      3900
     catcgcaatc gcgaagaatg gtgggtataa tcctcgcacg aagcatatcg atatacgcca      3960
     ccacttcatc aaggacgcac tgagccgtgg tgtggtacaa ctagcgtacg ttggcacgga      4020
     ggagcaagtt gccgatggcc ttaccaaacc actgcagcgg acgaagtttg aagagtgtcg      4080
     tcagatgatg ggaatctctg cggcttgagg aggag                                 4115
//
ID   Copia-81_AA-LTR repbase;    DNA;    INV; 114 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-81_AA_;
KW   Copia-81_AA-I; Copia-81_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-114
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2633-2633 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 114 BP; 40 A; 24 C; 16 G; 34 T; 0 other;
     tgttgaagaa gtatctcagc aagccttgac atctatagct gtaagaatta tcagaaaata        60
     aattagttcc tttttaacca ctaccaaaga cagacgtctt agctactctc taca             114
//
ID   Copia-82_AA-I repbase;    DNA;    INV; 4482 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-82_AA_;
KW   Copia-82_AA-LTR; Copia-82_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4482
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2634-2634 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1495-2019] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..3051
FT                 /product="Copia-82_AA-I_1p"
FT                 /translation="MAEKVAIEKLGDHNWPLWKFKINLILGEKGLSDIVKG
FT                 EKPAEPTNDWISKDGVAQSVIGLALEDTQLCHVMGKATAKEMWDALQAHHE
FT                 RKSMCGKVFLMRKSISLRMPERGSMTDHLSEITLLHNRLAGIGETMTDHWL
FT                 VSIVLSSLPESYNSLIMSLESRPEEELSLDFVRGRLLDEWRRRCGGESHSS
FT                 SSAEQHHRALQTGTKPKQKCHYCGKEGHFKRDCRKWIQDQQRKGDGRDGAG
FT                 RGSGSSKQKVNKVQEENEEVCFSVRSKKEDEHWYLDSGCTSHMTGDVSKLM
FT                 SVNGSRKQTICLADGNKVQSKGVGDCRVDACDGSGGPVNLKLKNVLLVPDL
FT                 KNNLLSVSKIADEGYDVTFSESECRITKNGSVIVVGVRDGNLYHLKRENEQ
FT                 SLLAETNHRAGCQHIWHRRLGHRHPEDVTKIVRDGLGTGLDMTDCGIRSVC
FT                 GTCCEGKLSRLPFPKSDTKSKAVLDLIHSDLCGQMEVVTPSGNRYVLTLID
FT                 DFSRYCVIYLLERKSQAEEKIREFVQLAQTQFGKTPKILRTDGGGEYSSES
FT                 FKSFLRKEGILLQQTAPYSPQQNGKAERMNRSLIEMTRCLLRDADMDKRYW
FT                 GEAINTANYLLNRLPCSATGKTPFELWSGKLPDYKHLRIFGSAAYVHVPKE
FT                 KRKKLDQKSIRMIFVGYADGRKAYRFLDPDTDAVTISRDAEFVEEFSKEED
FT                 IREVVPVSVAVSRHPKTSSAKEGSGAFPAKYLVEIDRSPIPTVEDEVPDDE
FT                 SVSTMEDEADSSDTEGNFDTADETEESDFEGFRDEEFQRRSQRSTKGKAPV
FT                 RLIEEINAVRIQEENEPKTYKDQWRTAMEEELASHRELKTWEIVKLPEGKK
FT                 VVGSRWVYKIKRNASGEPMKYKARLVAQGCSQKPGVDFEEVYAPVVTQATF
FT                 RTLLAVASYKKMVLKHVDIKTAYLNGSLGEEVYMRQPPGFAEPGKEGFVCR
FT                 LLKSIYDNKSSSCLVEYL"
FT   CDS           3402..4469
FT                 /product="Copia-82_AA-I_2p"
FT                 /translation="MNEVLNDMGFTASSADPCLYVRDVEGKSVYIVLYVDD
FT                 VVIGCDDEGEIDRVHEEISEHFETTGLGELKYFLGLEIDRVAGNYGVCLSG
FT                 YIQRVAEQFGLGDAKSSRTPMDEAYARGDLDSQLLPDNVNYRSLVGALLYI
FT                 SVNARPDIAVATSILARKVSQPTEADWTAAKRVVRYLRGTLNWKLQFSGSA
FT                 PTLMGYSDADWSGDHKTRKSTSGFVFTVGGTAVAWRSKQQSIVALSSMESE
FT                 YVALSEATQEVLWLRRLLADLGFEQKEPTVLHEDNQSCIAFVRSERVGKRS
FT                 KHIETKEMFVRNLCEKGEITLQYLCSEEMIADALTKPLGTIRNRKLSTKMG
FT                 LTEDEFRGTSGKD"
XX
SQ   Sequence 4482 BP; 1206 A; 942 C; 1308 G; 1026 T; 0 other;
     ataggttttg ggcccagtca cggctggtgg tggaaattag tggggttcgc gagtaaatcg        60
     gaacgttttc gtcgaaagtt tgccggcgct gaaaatcggt cggaagttcg cgtgtgtcgt       120
     cgcgaaaaca aaatggcgga gaaggttgcg atcgagaagc tgggggatca taactggccc       180
     ctgtggaaat tcaagatcaa cctgattctc ggcgaaaagg gcctgtccga tattgtgaaa       240
     ggcgagaaac cggccgaacc gacgaatgat tggatttcca aagacggagt tgcgcagtcc       300
     gtcatcggac tagctttgga agatacgcaa ctatgccacg tcatggggaa agccaccgcg       360
     aaagagatgt gggatgccct acaggcacac cacgaaagga agtctatgtg tggaaaagtt       420
     ttcttgatgc ggaagtcgat ttcgcttcgg atgccggagc gaggcagtat gaccgaccat       480
     ctttcggaga taaccctact tcacaatcgt ctcgctggaa taggagaaac gatgacagac       540
     cactggctgg tgtcgatcgt tctctcgagc cttccagaat cgtataattc cctcatcatg       600
     tcgctcgagt ctcgtccgga agaagaactt tcgttggatt tcgtacgagg gcgactcttg       660
     gacgagtgga ggagacggtg cgggggtgaa tctcatagca gcagcagtgc agaacagcat       720
     catcgtgcct tgcagactgg cacaaaacca aaacaaaagt gccattactg cggcaaggag       780
     gggcacttca agcgagattg ccgcaagtgg atccaggatc agcagcgaaa aggcgacggc       840
     cgcgatggtg ccggccgtgg ttcgggcagc tcgaagcaga aagtaaacaa agtgcaagaa       900
     gaaaatgaag aagtgtgttt cagtgttcgg tcgaagaaag aagatgaaca ttggtaccta       960
     gattcggggt gcacctccca tatgactggt gacgtttcga agctgatgtc agtgaacggt      1020
     tcgcggaagc aaacaatttg tttggctgat gggaacaaag tgcaatcaaa aggcgtcggt      1080
     gactgtcgtg ttgacgcgtg tgatggtagt ggtggccccg tgaatctaaa actgaaaaac      1140
     gttctgctcg tgccggattt gaagaacaat ttgctttcgg tgagcaaaat cgctgacgag      1200
     ggatacgatg taacgttcag cgaaagtgag tgccgtatca cgaagaacgg aagtgttatc      1260
     gttgtcggtg tccgtgatgg aaatttgtat cacttgaagc gtgaaaatga acaatcgttg      1320
     ttggcggaga cgaatcatcg ggctggatgt cagcacatct ggcatcgccg gctggggcat      1380
     cggcacccgg aggatgtaac caagattgtt cgagatggac tcggtactgg actggacatg      1440
     accgactgtg gaatccgttc ggtatgtggc acctgctgtg aaggtaagct ttctcgttta      1500
     cctttcccta aatcagacac gaagtcgaaa gcggttcttg atttaataca ttccgacttg      1560
     tgtggtcaaa tggaagtcgt cactccgagc ggaaaccgct atgttttgac gttgattgac      1620
     gacttcagta gatattgcgt aatttacctt ctagagcgca aatcgcaagc cgaagagaag      1680
     atccgagaat ttgtccagtt ggcacaaacg cagttcggga agacgcccaa aatccttcgg      1740
     accgatggcg gcggagagta ttcaagcgaa tcgttcaaat cgtttttgcg gaaggagggc      1800
     attttgctgc agcagaccgc gccgtacagc ccgcagcaaa acggcaaagc tgagcgaatg      1860
     aaccggtcgt tgatcgaaat gacccgttgt ctgctacgtg acgctgacat ggacaagagg      1920
     tattggggtg aggccattaa caccgccaac tacctactca accggcttcc ttgttccgct      1980
     actggtaaaa cgccgttcga gctctggagc ggaaagctgc cggattacaa acatttgcgt      2040
     attttcggat ctgctgccta tgtccacgta ccgaaagaaa agaggaagaa gcttgaccag      2100
     aagagtatcc ggatgatttt tgttggttat gcggacggaa gaaaggcgta ccggttcctt      2160
     gatccggaca cggatgctgt gacaataagc agagatgcgg agttcgtcga ggagttctcg      2220
     aaggaggaag atattcgtga agttgttcca gtctcggttg cagtatcgcg acatccgaaa      2280
     accagttcgg cgaaagaagg ctccggtgca tttccggcga agtatttggt ggagatagat      2340
     cggtctccga ttccgacggt ggaggacgag gttcctgatg atgaatcagt atctactatg      2400
     gaagatgaag cggattcttc tgacaccgaa gggaactttg atacggcgga tgaaacggag      2460
     gaatcagact tcgaaggctt tcgggacgag gagttccagc gacgttcgca gcgaagcacc      2520
     aaggggaaag caccagttcg cctgatcgaa gaaattaacg cagtgcgcat tcaggaggag      2580
     aacgaaccga agacctataa ggatcaatgg aggacggcga tggaagaaga attagcatcg      2640
     catcgtgaac tgaagacttg ggagatcgtc aagctaccgg aggggaagaa agtggttggc      2700
     agccgctggg tttataaaat caaacggaat gccagcggtg agccgatgaa gtataaagca      2760
     cgattagtcg cgcaggggtg cagtcaaaaa ccaggagtcg actttgagga ggtttatgca      2820
     ccggtcgtga ctcaagccac tttccggacg ctactggcgg tggcgagcta caagaagatg      2880
     gttctgaagc atgtagatat aaagactgcc tacctcaacg ggagtctcgg cgaagaggtc      2940
     tacatgaggc agcccccggg gtttgctgaa ccgggcaaag aaggattcgt ttgtcgtctg      3000
     ctcaaaagca tatatgataa taaatcttcg agctgtttag tagaatacct ataagtagat      3060
     gaaaaaactt ctggaggtgt cgactctgct tgtgtcggct aagggatcta tatctgtaaa      3120
     atgcaatata atacttcgca gtcagcgttt gtgtgctgtc ttcaagcatc tcatcagacg      3180
     tcatcaaagt agttattgtg cattaactga acgtgatatg aatttcaatg ttattggaaa      3240
     accagtgaag atccaagaga actcgaaaaa accattgtca gttttgcatt gcccattgtc      3300
     agcactcttg ggaaattaat tggtatagta ctaaattcgt ttgtcgtctg ctcaaaagca      3360
     tatatgggct gcgacaatcc gcacgctgtt ggaaccagcg aatgaacgaa gtcttgaatg      3420
     acatggggtt cacggctagc tcggcagatc catgcttgta tgttcgtgac gtcgaaggta      3480
     aaagtgtcta catcgtgctc tacgtcgatg atgttgtcat cggatgcgac gatgaagggg      3540
     agatagatcg agttcacgaa gagatcagcg agcattttga gacgaccgga ttaggagagt      3600
     tgaagtactt ccttggcctg gagatcgacc gtgttgccgg aaattacgga gtgtgtctgt      3660
     cgggatacat tcagcgcgtt gctgaacagt tcggcttggg tgatgccaaa tcttctcgta      3720
     cacctatgga tgaagcttat gctcggggcg acttggacag tcagctactc ccggacaacg      3780
     tgaactacag aagtttggtg ggcgccttac tgtacatctc cgtgaatgcg cgacctgata      3840
     tagctgttgc tacttcgatc cttgctcgga aagtttccca accgacggag gcagactgga      3900
     cggccgcgaa acgtgtcgtc agatatctgc gtggaaccct taactggaaa ttgcaattca      3960
     gtggatctgc accaacgctg atgggttact ccgacgcaga ttggtctggg gaccacaaaa      4020
     ccaggaagtc aacatctgga ttcgtattca ccgtgggcgg cactgcggta gcctggagaa      4080
     gcaagcagca gagcatcgtg gcactctcgt caatggaatc ggagtatgtc gcgcttagcg      4140
     aagcaacgca ggaggtgttg tggctacgaa gactacttgc ggatctagga ttcgagcaga      4200
     aggagccaac ggtgttgcac gaagacaatc aatcgtgcat cgcctttgta cgatctgagc      4260
     gggtcggtaa acgctcaaag cacatcgaga cgaaggagat gttcgtgcgc aatctttgtg      4320
     agaaaggaga gataacattg caataccttt gttcggagga gatgatcgcc gacgctttaa      4380
     cgaagccgct gggaacgatt agaaaccgga agctgtcgac gaaaatggga ttgaccgaag      4440
     atgaatttcg tggaacgtcg ggtaaagatt aaggaggagt gt                         4482
//
ID   Copia-82_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-82_AA_;
KW   Copia-82_AA-I; Copia-82_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2635-2635 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 190 BP; 47 A; 48 C; 27 G; 68 T; 0 other;
     tgacgtcatc ataagttcac cttgctaatc atttaccttt gttccatccc tttgctatga        60
     ctggcagccc tgcagtcagt cttcaaactt gagtctaata aaaaccaagc gtgttcttta       120
     tctttgaagt taatttgact gttttaagtt gtaattcccc gaaatttccc caccaatctt       180
     ccgttagcca                                                              190
//
ID   Copia-8_AA-I repbase;    DNA;    INV; 1870 BP.
XX
AC   AAGE02018254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_AA_;
KW   Copia-8_AA-LTR; Copia-8_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1870
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018254; Positions   23293   21424.
XX
CC   'TTTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1851
FT                 /product="Copia-8_AA-I_1p"
FT                 /translation="MTEKVSIPLLNNSNYSTWKVRMQMLLMRDDWWFAIEE
FT                 PRPDPATSSWKKGNQKALATIVLFLSDNQMHLVKDVTTAKDAWMKLKSFHE
FT                 KVTMTSRVSLLKRICNMNMTEGQEMEKHFFELEELFDRLHCAGQQLDTSLR
FT                 IAMMLRSVPDSYDGLVTALESRKDEDLTIELVKQKLMDEWQRRSERLGNPG
FT                 ESDEKALKLYTKRQEQKVCYYCSKPGHFKRNCRLFKREQCGKEDEERTATA
FT                 KQAAEAENPICFTVGSRQCKGCWFVDSGCSNHMTNDRRFFKKLDETVTVDV
FT                 ILADGSRSKSAGIGEGLVKCLGSDGKLKEILIKEVMYVPELCSGLLSVRKL
FT                 TRKGFRVQFGAKRCDIIGLSGKLVAVGELNDDLYELKTEEMANARNSSRRQ
FT                 QSCRLVLLGRSCETGIEAHSNSTVRMKCVYDQLAEQYIQEELSNGNQYDRL
FT                 DDDLKLLTDMRCLTKQNEFDSTRTLEQLRWHKGWCVRNKCVFSDTMHLMNR
FT                 ATFPARG"
XX
SQ   Sequence 1870 BP; 535 A; 329 C; 554 G; 452 T; 0 other;
     ggttatgggc ccagttgcgc gagtgtggtt ccccgtggaa acgaaagttg tggacattcg        60
     atttcggaag agttagctgt cttgaaagct gtagcagtag gctgtgtggt gctcgtacgg       120
     cgctctgatt tggcgtagtt cttgtccgga gtaagagcga gagagttggc tggctgaaag       180
     ctgaaacatt tgatgagaag tgacttgtat cccgaatgaa gtgagaggaa tagtgttgtt       240
     gctccggttc ctcactgtcg gttcgagttg agtgagatag ttggtaactc acagtgcgtc       300
     aagaaaaagt cggtttggtt gtaacgaaaa caaaaacaga aaatgacgga gaaagtttcg       360
     attcccctgt taaacaacag taattattca acctggaagg tgaggatgca gatgttattg       420
     atgcgagatg attggtggtt tgcgatcgaa gaaccaagac cggacccggc tacctccagt       480
     tggaagaaag ggaatcagaa ggcactggca acaatcgtgc tgtttttgtc ggataatcag       540
     atgcatctgg tgaaggacgt aacgacggct aaggacgcat ggatgaaatt gaagtcgttt       600
     catgagaagg tgacgatgac ttctcgggtg tcgctcctca agagaatttg caacatgaac       660
     atgaccgagg gacaagaaat ggagaagcat tttttcgagc tagaagagct cttcgatcgc       720
     ttgcattgcg cgggtcagca gttggatacg tcactcagga ttgcaatgat gcttcggagc       780
     gtcccggatt cctacgacgg attggtaact gctctagaaa gtcgaaaaga tgaagatctg       840
     accatcgagc tggtgaagca gaagctgatg gacgaatggc agcggcgatc ggaacgattg       900
     gggaatccag gcgaatcaga tgagaaggcc ctgaagctgt atactaagcg acaggagcag       960
     aaagtttgct actattgtag taagccgggc catttcaaaa ggaactgccg gctgtttaaa      1020
     agggagcaat gtggaaagga agacgaagaa cgtactgcta cagccaagca ggctgctgag      1080
     gcggaaaacc caatctgctt tacagttgga agtcgtcagt gcaaggggtg ttggtttgtg      1140
     gatagcggat gctcaaacca tatgaccaat gacagaagat tttttaagaa gttggatgaa      1200
     actgttaccg ttgatgtgat actggccgac ggatctcgtt cgaaatcagc aggaattgga      1260
     gagggattgg tgaagtgtct aggcagcgat ggaaaactga aagagatttt gatcaaggaa      1320
     gttatgtatg tacccgagtt gtgcagtgga ttactatccg ttcggaaatt aacacgaaaa      1380
     ggtttcagag tacagtttgg cgctaaaagg tgtgatatca tcggtttatc aggaaagtta      1440
     gtggctgttg gtgaactcaa tgacgacttg tatgagttga aaacggaaga gatggctaac      1500
     gcaaggaaca gttctcgacg acagcagagc tgccgattag ttttgcttgg acgatcttgt      1560
     gaaactggaa ttgaagccca ctcgaattca acggtacgaa tgaagtgcgt ttacgaccag      1620
     ctggctgagc aatacattca ggaggagctg tccaacggaa atcaatacga tcgtttggat      1680
     gatgacctga agctactgac tgatatgcga tgtttgacga agcaaaacga gttcgattcg      1740
     accaggacct tggagcagct gcgctggcac aagggctggt gcgttcgaaa taaatgtgtg      1800
     ttttcggata ccatgcattt gatgaatcga gcgacatttc ctgctagagg atgaaaacat      1860
     cgaggaggag                                                             1870
//
ID   Copia-8_AA-LTR repbase;    DNA;    INV; 247 BP.
XX
AC   AAGE02018254;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_AA_;
KW   Copia-8_AA-I; Copia-8_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-247
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018254; Positions   21423   21177.
XX
SQ   Sequence 247 BP; 59 A; 62 C; 50 G; 76 T; 0 other;
     tgttggtggg ggcgatattt tcacccgccg cctctgtgtc aacttctcga tcattgaaga        60
     tcgatctcac acttgtgagc acgagagaca ataaatacaa tacttttata ttctatgaca       120
     gtcagtgcta aatacaacac gttcatgtaa agtgtcccgg ttctattatt tacatccgac       180
     gtttcccagt cttcccggta ttcgattcgg tccgccgcat agcttgttcc gtcgggagat       240
     tccaaca                                                                 247
//
ID   Copia-8_AG-I repbase;    DNA;    INV; 4183 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_AG_;
KW   Copia-8_AG-LTR; Copia-8_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4183
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1439-1439 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [1578-2081] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..4183
FT                 /product="Copia-8_AG-I_1p"
FT                 /translation="MEEERMQRVYLFDGTNFSNWSFRMELYLEELGLLHCI
FT                 EKTLEEEDFFQVNPTTVIEALNEEKRLKRKQQDAKCKSVLIHKIADNQLEY
FT                 VRGKTSPRAIWLTLKENFEKKGVSGVFYLLKQLSTMKFDEKRTLQEHILSF
FT                 EKLVRELESANIKLDKSVLVFFLLQSMPKSFEHLITVLETLPVEQCSMEFV
FT                 KARLLNEAVKRQFNVETVETSTAFSGRVGKPGNTGRFVFKCHACGKPGHKR
FT                 INCPENKGNERHVKAENQKKKSTAHYAENQDDTAFITGDVNLDENFQWILD
FT                 SGASEHMVNNKKYLQNIRKLNSPIVINVAKSGVSLTSDVIGDLKIFVKIQD
FT                 EQLPYTVHDVLYVPGLFANLFSVKRVVERGMEVKFSENGAKIMRGSKVLCT
FT                 ASRKGRLYELDILTPNIESAMVTDPQDLLTIWHRRYGHIGNTGLVKLIQAE
FT                 MVEGIDNCGNVKPHAGVCESCMMGKQTRLPFETVPRPRSSRPLELIHSDVC
FT                 GPFTPASWDGKKMFVTFIDDYTHFTAVYVLKSKAEVFDAFVKYTAMATAHF
FT                 DRRISRVRCDNGREYINSNFTHFCEEKGIVMEPTVPYTPQQNGVAERMNRT
FT                 IMERARAILDDSKFKRSMWNEAVLTAVHLINRSPSSSLSMSKTPYELWFGH
FT                 KPNVSRFRIFGSKVFCHIPKEKRTKLDVKSQVGFLVGYGINGYRVWDPVHR
FT                 KIIVARDVVIEELMSNRRLEESTFDQERMLPEQVSETNRNIEFTVRHLEDF
FT                 GDYLNTSTEGIKNVKNTNIETTNRSADIVGNMEETCHENSNDTPDVIDNTE
FT                 HNEVAVRRSERLRKPPVRFSDYEANVAFALNAENYVEDLPDTIDALRKRDD
FT                 WPEWKQAINEEMQALEKNETWDLVELPVGARAVPCKWVFKIKYSENGTVNR
FT                 YKARLVAKGCSQRQGYDYQETYAPVVRITTVRTLLAVAVQKKFYLHQMDVR
FT                 TAFLNGNLSETVYMLQPPGFERGKKVCKLNKSLYGLKQAPRSWNEMFHNYM
FT                 LTLEFVRSAYDSCLYTRKSAKVEMYLILYVDDIVLASNSLEEIQLVKEQLK
FT                 RKFEMDDMQEISNFLGMKIGYDMARSTLKINQSKYVKDLLKIFGMEDCKPS
FT                 LVPLETNLKLTRNHNMEGTTQHPYRELVGCLTYLMITSRPDISIAVNYLSR
FT                 FQSGATDEHWTHLKRVLRYLQGTKDYFLEYRHNQEEPIVGFADADWGSDME
FT                 SRHSTSGYIFQIFGNTVLWTTRKQGTIALSSTEAEYVALSQSSCEAMWLEN
FT                 LLTEFGVHLNSPLIIYEDNQSCMYIAEEPREQKRMKHLDIRYNFIRECIQN
FT                 GRIQLKYIPSENQLADMFTKGLSSAVFTKHRFAIGLRGG"
XX
SQ   Sequence 4183 BP; 1378 A; 721 C; 975 G; 1109 T; 0 other;
     ttaggttatg ggctctccac gtctctaact agtgtgtcgc ggatataaaa gggattcatt        60
     gaagataatt ttattgttcg tggtcgtgtt cattccggtc gatattatcg aagtactctg       120
     gaaaaaccaa catggaggaa gaacgaatgc aacgcgtgta tctttttgat ggaacgaatt       180
     tttcgaattg gagttttcgt atggaattat acctggaaga attggggtta ctccattgta       240
     tcgaaaagac tctggaagaa gaagattttt ttcaagtgaa tccgacgaca gttattgaag       300
     cgctaaatga agaaaaacgg ctaaaacgga agcaacaaga tgcgaagtgt aaatcggttt       360
     taattcataa aatagccgat aatcaactgg aatatgttcg aggaaaaaca tctccaagag       420
     caatttggtt gacgttaaag gaaaatttcg agaagaaagg agtttccgga gtgttttact       480
     tgctgaaaca gctatctacg atgaagttcg atgaaaagcg aacattgcaa gaacatattt       540
     tatcatttga aaagctcgtc agggaacttg aatcggctaa catcaagttg gataagtcgg       600
     tattagtatt ctttttgcta caatcgatgc cgaaatcatt tgaacatctg attacggtat       660
     tggaaacgtt gccggttgaa cagtgctcga tggaatttgt caaagcacgt ttgctgaatg       720
     aagccgttaa acgacaattc aacgtggaaa cagtcgaaac cagcacagcc ttttctggaa       780
     gagttggaaa acctggaaat actggaagat ttgttttcaa atgtcatgct tgcggaaaac       840
     ctggtcataa gcgtataaat tgtccggaaa acaaaggaaa tgaaaggcac gtaaaagcgg       900
     aaaatcagaa gaagaaaagt acggcacatt atgcggaaaa ccaagacgac acggcgttta       960
     taactggtga tgtgaattta gatgaaaatt tccaatggat actcgatagt ggtgcatcgg      1020
     aacatatggt aaacaacaaa aagtatctgc agaatattcg aaaactgaat tcaccgattg      1080
     ttataaatgt ggccaagtcg ggagtatcac taaccagtga tgtaattgga gatttgaaga      1140
     tatttgtgaa aattcaagac gagcagttgc catatacagt acacgatgta ttgtatgtac      1200
     ctggactttt tgcgaatttg ttctccgtga aacgagtcgt tgaacgagga atggaagtaa      1260
     aattcagcga aaatggtgca aaaatcatgc gtggatctaa ggttttgtgc actgcaagtc      1320
     gaaaaggtcg attatatgaa ttggatattt taacaccaaa tatcgaatct gccatggtta      1380
     ctgatcctca agatttgctg acaatatggc atcgtcggta tggtcatatt ggaaatacgg      1440
     gtctagtgaa gctcatccaa gctgaaatgg ttgaaggaat cgacaactgt ggaaatgtga      1500
     aaccgcacgc aggagtctgt gaatcgtgta tgatgggaaa acaaacaagg ctaccatttg      1560
     aaacagttcc tcgacctcga tcatcgcgac cattggaatt gatccattcc gatgtttgtg      1620
     gaccgttcac accagcttcc tgggatggta agaagatgtt cgttaccttt attgatgatt      1680
     acacgcattt tacagcagtg tacgtgctga aatcaaaggc ggaagttttc gacgcttttg      1740
     ttaagtacac agcgatggct acagctcact ttgatcgtcg aatatcccga gtaagatgcg      1800
     ataatggccg tgaatatatc aactcaaatt ttacacattt ttgtgaggaa aagggcattg      1860
     taatggaacc aaccgttcca tatacaccgc agcaaaacgg agttgctgaa cgcatgaaca      1920
     ggacgattat ggaacgtgca cgagctattt tggacgattc gaaattcaaa cgatcgatgt      1980
     ggaatgaagc ggttttgacg gcagtacatc tgatcaatcg aagtccgtcc tcatctttaa      2040
     gtatgagcaa aactccatac gaattgtggt tcgggcacaa gccaaatgtg tctcgtttca      2100
     gaatattcgg aagcaaggta ttttgtcaca taccgaaaga gaagcgaacg aagcttgatg      2160
     tcaagagtca agtaggattt cttgttggct acggaatcaa tggctatcgt gtgtgggatc      2220
     ctgtacatcg gaagattatc gttgctcgtg atgttgtaat cgaagaatta atgtcgaatc      2280
     gtcgtttgga agaatccact tttgaccaag aaaggatgct accagaacag gttagtgaaa      2340
     caaatcgtaa tattgaattt actgttcgac atctggaaga ttttggcgat tatttgaaca      2400
     catcgactga gggcattaaa aacgtgaaaa atacaaatat tgaaactacg aatagatcgg      2460
     ctgacattgt tggaaatatg gaagaaacat gtcatgaaaa ctcgaatgat acgcctgatg      2520
     ttattgacaa cacagaacat aacgaagtag cagttcgtcg tagtgaaagg cttcgaaaac      2580
     cacctgtgcg ctttagtgat tatgaagcta atgtcgcatt tgcactgaac gcggaaaatt      2640
     acgtggaaga tttacccgat acgattgatg cacttcggaa gcgtgacgat tggcctgaat      2700
     ggaaacaagc gatcaatgag gagatgcaag cgctcgagaa aaatgaaaca tgggatctag      2760
     tagaacttcc tgttggcgcg agagcagttc cttgtaaatg ggtattcaaa atcaaatact      2820
     cggagaatgg tactgtgaac agatacaagg cgcggctcgt tgctaaagga tgttctcaac      2880
     gtcaaggata tgactatcaa gaaacgtatg ctccagtagt ccgaataaca acagtgagaa      2940
     ccctactagc agtagcagtg cagaagaagt tctatcttca tcagatggat gtgcggaccg      3000
     cctttctgaa cggaaatctt tcagaaacag tgtacatgct acaaccacca ggatttgaga      3060
     gggggaagaa ggtatgtaaa ctgaacaaat ccttgtatgg tttgaaacag gcgccgcgga      3120
     gctggaatga aatgttccac aattatatgt tgacactgga atttgtacgg tcagcatatg      3180
     acagttgttt gtacactcgg aaatctgcga aagttgagat gtatctaatc ctatacgtcg      3240
     atgatatagt tttggcatca aactctttgg aggaaattca gctggtaaag gaacaattaa      3300
     aaaggaaatt cgaaatggac gatatgcaag aaataagcaa cttccttgga atgaaaattg      3360
     gttacgacat ggctcgaagt acgttaaaaa ttaatcaatc aaagtacgtg aaggacttgt      3420
     taaaaatatt tggtatggaa gattgcaaac catcgttagt acccctagaa accaatttga      3480
     agttaacacg caaccataac atggagggaa caacacagca tccgtaccgt gaacttgtag      3540
     gatgtttaac ctatttgatg attacgtctc gtccagacat tagtattgca gttaattatc      3600
     ttagtcgctt tcagagtggt gcaacagatg aacactggac acatctgaaa cgtgtactaa      3660
     ggtatttaca aggcacaaag gattatttcc tagaatatcg acataatcaa gaggagccaa      3720
     ttgtaggatt tgctgatgca gattggggta gcgacatgga aagtcgtcat tccacaagtg      3780
     gctacatatt tcaaattttt ggaaacactg ttctatggac cacaagaaag caaggaacca      3840
     tagcattgtc atcaacagaa gcggaatatg ttgcgttaag ccaatcatcc tgcgaagcaa      3900
     tgtggttaga aaatctgctt accgaatttg gcgtgcattt gaatagtccg ttaattatat      3960
     acgaagacaa ccagtcgtgt atgtatattg ccgaagagcc tcgcgaacaa aaacggatga      4020
     aacatttaga catcagatac aacttcatac gagaatgtat ccagaacgga agaatccaac      4080
     tgaagtatat tccaagcgaa aaccaacttg cggatatgtt tacgaaaggg ctttcttcag      4140
     cagtttttac gaaacatcga tttgcgatag gtctaagagg ggg                        4183
//
ID   Copia-8_AG-LTR repbase;    DNA;    INV; 112 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_AG_;
KW   Copia-8_AG-I; Copia-8_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-112
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1441-1441 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 112 BP; 44 A; 16 C; 23 G; 29 T; 0 other;
     tgttggaaaa acaaagtaga ccatagcata tacgacgggt ataaaagaag cagctagctt        60
     cagttatgtg gtagtttagt ataataaact gtagagacac attctaaact ca               112
//
ID   Copia-8_BTa-I repbase;    DNA;    INV; 3640 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3640
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 580-580 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
SQ   Sequence 3640 BP; 1085 A; 775 C; 725 G; 1043 T; 12 other;
     ggttatgggc cttataagga gtttcggagt tcattttttc gcctctaaca gttcgtaagt        60
     gttagttcgt gttcgtgata cgcgttcagt tkgtcgcacc tcgctcggtc tacatcagaa       120
     gatggccgct cacttgaatt cgaactcgct cacgattgag aaactaacgg gccgcgaaaa       180
     ttatgcaaat tggaaattcg caatgaaaat gctcctcatc catgaaaatt tgtggtcgtg       240
     catcgatgga tatcctgatg gcgattcaac cagtgaagct gatcgcaaaa gaaatgatma       300
     gaaagcatgg tccaaaatag gcctctctgt gaacccaagt gtctattcac acgttcgtga       360
     ttctacttct gcaaaggaag cctggcaaaa cttggctaaa gcctttgagg acagtggcct       420
     tagtggtcgt ttgacactcc tacgtaagtt gtgttccctt aaaagagaaa attttgactc       480
     catggaagct tatattacag aagtacttgg aacgtctcag aggttatctg ccattaaata       540
     tcctttagat gatgaatttt tagccgtaat catgctaaat ggtctgccct ctgagtacaa       600
     tccattaatc atggccttag agaactccgg atctaaaatt actagtgatc tggtgaaatc       660
     taagctgatc aatgaacctg ggcgtcatgc agtaaccgaa tctgcgctct ttactaaacg       720
     tcctaagtct aagaagtctg taaagtgcca tcactgccat gaagtaggac atattagacc       780
     tcagtgccct aaactaaaag ctgtaaccaa tgccgctagt gatgagagag atcactctcc       840
     taaagatacc agctactcac ttttgacatt tttgtgcgca aatgtttcca catctgattg       900
     gttcattgat tctggagcca ccctgcatat gacaaacaat aggtcataca tcagcgactt       960
     cagcaaatgc catgacacca gtgtttctgt agctaacggt taccgtatgc ctgttgaagg      1020
     caaaggcaga gttcgcgtct ctttaaacga cagcaaactc aactgcttct cagacgtaaa      1080
     ttttgtgcct gaactttctg caaatctcct atcagtgaaa aggatagtag ataaaggttt      1140
     cgttgtcctg ttctcaaaag gcaaatgcaa actctatcga gcagactcct ttgcttttga      1200
     tggtgatcta caagcgactg cccttgaagt ggatggcctc tatcgtctca atgcgaaagt      1260
     tcaagctgtt cccgatgaaa gcaactccgc aattcacaat gcttcagcgt gtgctgtaac      1320
     caatgcaagt gccctcaatt cctcagctac tgtcagtgct caaatctggc atcgtcgcct      1380
     gggacatctt cctagaatcg gcatggactt actacgcaat ggcttagcca ctggtgtcaa      1440
     cttctccaaa ccaagtgctg atccatgtgt tccatgtatt gaaggaaagc agtgcaggaa      1500
     accatttaaa aagtgtaagg caacgcgtgc cacagaattg ctacaaatcg tgcatagtga      1560
     cttaaacggt ccgatgagtg tcaattcgtt aagcggtaaa cgctatatgc taatctttgt      1620
     tgatgacctt tctcgcaaaa tttttgctta ttttttacaa caaaagagcg aagtctttga      1680
     tgtgtttaaa agtttcaaag cgttggttga aaatgaaacc ggttcaaaaa ttaaaatatt      1740
     acggtcggac aatggtggtg aatatcttag ttccgagatg atcgaattct tgtccacaaa      1800
     tggtatacgt caccaactaa ctgtgccgta cactccggaa caaaacggta tggcagaacg      1860
     aactaatcga tcgattgtcg aaaaaacgcg ttgtttgtta caagaagcta acctccctaa      1920
     accatattgg gccgaagctg ctaacacagc ggtttactta aaaaatcgca gtcctcatcg      1980
     ttcagtgata gataaaactc cagaagaagc atggactggc caaaaagtag acttgtctca      2040
     tttaaaagtg ttcggttgtg tcgcttacgc acatgtccct aagcaacttc gtactaagtt      2100
     ggatcctaaa agtcaaaagt gtatttttgt cggttactgt gagaacacca aaggctatcg      2160
     ccttatcaat ccctccaaac cgctgaaaat tatcaagtca cgggacgtta tctttgatga      2220
     agcctccatc ggtaggcaat cccaagactc agcaccgtgt acgtcttcac aaattgtaaa      2280
     tgttgaaaag cagttggcgt cctttccact catcgaatca tcaccctcta aacctcagat      2340
     ccatgaccta ccgcctcaaa ctccggcacc tcatggtcag tctgcaggag actctgaaag      2400
     tgacagtgac agtgactttg gcattgctaa tattttctct gatgaaccat ggcatccaca      2460
     aagaaatcga aaacttccag ctaaatttgc tgactatcat ttgtatttca ctaattgtaa      2520
     ttctgtaggt gaggttgata aagagccaaa aactctcaag gaggctcttt ctggtaaaga      2580
     tagtaataag tgggaaatgg ccttaaaaga cgaatttgat tctttcttaa gaaatcaagc      2640
     atggaccctt gtcaatcgtc ccttagatag aaaaccgatt aaatgcaaat gggtcttcaa      2700
     aattaaaagg gattctgcca ataacattga gcggtacaaa gcaaggcttt gtgccaaagg      2760
     ttatgatcag attgaaggct tagattattc tgatatttac tccccggttg tcagacattc      2820
     cacagttcgc tatttatttg cattagcagc tgaactcaag ctagatatca atcatttcga      2880
     tgtcagtaat gcatttctct ctagtagctt agacgaatgt atttatatgg agcaacskga      2940
     gggctttata aggtcaaggg gacaaagtgt gcctactcag tggagccmtc tgtggcctta      3000
     aacaagcatc taagcaattc tatgtcaagg ttgatgacac tttgacaaaa ggattcmtaa      3060
     aatctgctca ccaaccttgc gttcacttca aagtatggat mgtmagccat kagcactgga      3120
     tatctattta agtttggcaa tgctccaatt tcatggtgca gcaaaaaaca gtcgacggtt      3180
     gctctatcat ccactgaagc ggaatacatg agtatggcgg aagcttcaaa ggaakcagtt      3240
     tttttattta acttacatca cgaagtactt aaaattaaaa acagcatttg tatttcagta      3300
     ttggatgaca atcaaagtgc tcaagaattg gcatcacata caactgttca tcatagaact      3360
     aaacatattg atgtccgcca ccgttttatt cgtgaagcta tcaataaaaa tatcattaaa      3420
     cttgwgtatt taccaaccga tctcatgata gcagatgttt taackaaaac ccttaacaaa      3480
     agtaagcata tcttctgtgt tgaaaacatg ctgcagtcaa gagaactgct gtaaacctct      3540
     tccaggtgtt tcttcaaatt tctcaatttg atcattttcc ttacttttct ctttcatcat      3600
     ttatatatcc cacatcgtgt gcatccggat taagggggtg                            3640
//
ID   Copia-8_BTa-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-8_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-217
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 605-605 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 217 BP; 48 A; 51 C; 35 G; 83 T; 0 other;
     tgttggaagg tagtgataat cctactgcac aatctgtatt gtcagtgcgt aagcactccc        60
     accctcttgt tactctatgt tgcctactct atcctgttct ctctctatgc gccttgcgtg       120
     tgtatttttg tcaatcagtt tcatccatat tctatgccgg aataaaatat gtcttaaact       180
     tcatttagtg ttgtcttgat ttagacatcc tccaaca                                217
//
ID   Copia-8_CQ-I repbase;    DNA;    INV; 2741 BP.
XX
AC   AAWU01044740;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_CQ_;
KW   Copia-8_CQ-LTR; Copia-8_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2741
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 331-331 (2011).
XX
DR   Genome; AAWU01044740; Positions    2895     155.
XX
CC   Positions [1595-2134] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..2728
FT                 /product="Copia-8_CQ-I_1p"
FT                 /translation="MAEEDKGERFFMPLFDGTEFPAWKYRLLVMLEDAELL
FT                 HCVEVEAVDDPALTEAAGDSEQQKAAKKALLAKRLKQDRRCKMLMVSRIHN
FT                 SQLEHVQDLKTPKEILDALVGIFERKSIAGRMAAQRKLMAHRYVSGPLKDF
FT                 FLEHDRLVRQLRGTGAVISEIDVVCNLLLNMGSAYATVVTTLESMEEKKLT
FT                 MQTVKCRLLDEEVKRSAIGVELVTPKTESAAFAGDKESRPKKKLKCFGCQQ
FT                 EGHKIADCPKKMQEQKEPKPSSGRTSKANAAESSSGEICFAAEKDAGYPPE
FT                 KSKVRWIVDSGCSDHLVNDETLFDELTLLAKPVEIAVAKDGESIVAHYSGT
FT                 VRLHTIVGGERRRCSVSNVLYVPELRMNLFSVLQVEKKGMKVVFDKGSVKI
FT                 FSNSELVANGARRGLFYELDLYRIESVESESLLACGRITKSLQLWHRRFGH
FT                 LNMNQLNQLIAKGFVDGLKPQSGDNSVVVCEPCVVGKQTRKPFSVRDGKRS
FT                 SRVLEIVHSDVCGPISPEGANGERYFVTFIDDWSHFLMVFAMVTKDEVLER
FT                 FMKYEAYVTAKFGVQISRLRCDNGGEYKNKAFEDFCDRKGIRMECTVPYTP
FT                 EQNGTSERMNRTVVEKGRAMLEDAAIDKSFWVQAIQAAAYLTNRSPTNANE
FT                 GNKTPFEVWEGRRPNVSNLRVFGSKVYVHVPKERRKKLDAKAWKGIFIGYS
FT                 NNGYRVWNPETKQESVARDVDFVENPDAVEVAEGVIQSTKKSDVPMILIRR
FT                 DEEESVVEHDEVVEEDEDFESCTEPDEDVPATEPAPVPIDGAPAPAARPDR
FT                 NRNPPAWHKDYEVEYGHSASSALSYVDYSLELLDELRERLDREKRRILTSA
FT                 GVPDCCV"
XX
SQ   Sequence 2741 BP; 676 A; 630 C; 874 G; 561 T; 0 other;
     cttcaagaag agttaccaaa cgaaatacac gcgctttatc tatcgtttaa ctaaaaccgc        60
     gttttattga ccgcgtcggt cgcccttccg ccgtaacact ttaggttatg ggccctgcaa       120
     cgcgcagcga gtgagtgaaa gttaaattat ggcggaagag gacaagggcg agcggttctt       180
     tatgccgctg ttcgacggga ccgagtttcc cgcctggaag taccggctcc tggtgatgct       240
     ggaggacgct gaacttctgc attgtgtgga agtggaggcg gtggacgatc cggcgctgac       300
     ggaagcagcg ggcgattccg agcagcagaa ggcggcgaaa aaggcgttgc tggcgaagcg       360
     gctgaagcag gatcggaggt gcaagatgct gatggtgtcg agaatccaca actcccagct       420
     ggagcatgtg caggatctga agacgccgaa ggaaattctg gacgccttgg tcgggatctt       480
     cgagcgcaaa agcatcgccg gtcggatggc cgcgcagcgg aaactgatgg cccaccgcta       540
     tgtttccggg ccgctgaagg acttcttcct cgagcacgat cgactggtgc gacagctccg       600
     cggaacggga gcggtaattt ccgagataga cgtcgtctgc aacctgcttc tcaacatggg       660
     atcggcgtac gcgacagtgg tcacgacgtt ggagtcgatg gaggagaaga aactgaccat       720
     gcagacggtg aagtgtcgtc ttctcgatga agaagtcaag cgatcggcga taggtgtcga       780
     gttggtcacc ccgaaaactg agtcggcggc ttttgctggt gacaaagagt cgcgaccgaa       840
     gaagaagctg aagtgcttcg ggtgtcaaca agaggggcac aagatcgctg attgcccgaa       900
     gaagatgcag gaacagaagg agccgaagcc atcgtccgga agaacatcga aggcgaacgc       960
     tgctgaaagc agtagtggcg agatttgttt tgccgctgag aaggatgcag gatatccacc      1020
     ggagaagtcg aaggtgcgat ggattgtgga ctccggttgc tcggatcacc tcgtgaatga      1080
     cgagaccctt ttcgatgagt tgacgctgct ggccaagccg gtggagattg ccgtggccaa      1140
     agatggagag tccatcgtgg cgcactactc ggggacggtg cggctgcaca ccatcgtcgg      1200
     cggtgagcgt cggcgctgtt cggtgtcgaa cgtgctgtat gttccggagc tgcggatgaa      1260
     cctgttttca gtgctgcaag tagagaagaa aggcatgaaa gtggtgtttg acaaaggaag      1320
     tgtgaagatc ttcagcaact ccgaactggt tgccaatggt gcgcgtcgcg gtctgttcta      1380
     cgagctcgat ctgtacagaa tcgaaagtgt tgaaagtgag tcgttgttgg cctgtggacg      1440
     cattacgaag agcctacagt tgtggcaccg caggttcgga cacctgaaca tgaatcagct      1500
     aaaccagctg attgcgaaag gctttgtcga cggtttgaag ccgcagtccg gtgataacag      1560
     cgtcgtcgtg tgtgaaccgt gtgtcgtcgg gaaacaaaca cgaaagcctt tctccgtgcg      1620
     cgatggcaag aggtcgtcgc gagtgcttga aattgttcac tcggatgttt gcggacctat      1680
     ctcaccggaa ggtgcaaacg gtgaacggta cttcgtcaca ttcatagacg attggagtca      1740
     tttcttgatg gtgttcgcga tggtgacgaa agatgaggtg ctcgaacggt tcatgaagta      1800
     cgaagcgtac gtgacggcga agttcggagt gcagatctcc cggctgcggt gcgataacgg      1860
     aggcgagtac aagaacaagg ccttcgagga tttctgcgac cgcaagggga tccggatgga      1920
     gtgtacagta ccttacaccc ccgaacagaa cggcaccagt gagagaatga accgcacagt      1980
     cgtcgagaaa ggacgtgcca tgctggaaga tgctgcgatt gataagagtt tctgggtcca      2040
     agctattcag gctgcagcct acttaacgaa tcgcagtcca acgaacgcca acgaaggaaa      2100
     caaaacaccg ttcgaagtgt gggaaggacg gcggccgaac gtttcgaacc ttcgtgtgtt      2160
     cggctccaag gtgtacgtgc acgttcccaa agagcgccgc aagaagctgg acgcaaaggc      2220
     ctggaaaggg atcttcatcg gctattccaa caacggatat cgggtgtgga atccggaaac      2280
     gaagcaggag agcgtcgcaa gagatgtcga cttcgtggag aatccggatg cagtggaagt      2340
     tgccgagggt gtgatccagt caacaaaaaa aagtgatgtg ccaatgattc tgattcgtcg      2400
     agatgaagaa gaaagtgttg tggaacacga cgaagtcgtt gaagaagacg aagactttga      2460
     gagctgcacc gagccggacg aagatgttcc tgctaccgag ccagcacctg tgccgatcga      2520
     cggcgctcct gctccagccg ccagaccgga ccggaatcga aatcctccag cgtggcacaa      2580
     agactacgag gtggagtacg gtcattctgc ttcaagtgct ctgtcctacg ttgactattc      2640
     gttggaattg ctggacgagc tacgggagcg actggaccgt gagaaacgga ggattctgac      2700
     cagtgctggt gtaccggatt gctgtgtttg agcgggcgta t                          2741
//
ID   Copia-8_CQ-LTR repbase;    DNA;    INV; 102 BP.
XX
AC   AAWU01044740;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_CQ_;
KW   Copia-8_CQ-I; Copia-8_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-102
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 332-332 (2011).
XX
DR   Genome; AAWU01044740; Positions     154      53.
XX
SQ   Sequence 102 BP; 18 A; 34 C; 26 G; 24 T; 0 other;
     tgagtgtgca accccttgca acccgtgtgc cccactttag tgcgccgcca gtgcacgcgc        60
     tagctgtcaa acgctgtttg gaggaagctt cacttcgcct ca                          102
//
ID   Copia-8_DAn-I repbase;    DNA;    INV; 4348 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_DAn_;
KW   Copia-8_DAn-LTR; Copia-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4348
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 305-305 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1617-2147] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1131..4304
FT                 /product="Copia-8_DAn-I_1p"
FT                 /translation="MFESVTKVEKTLHLANNNTTSVNGIGDINIEVRNKQQ
FT                 KKEIILKEVLHVSDLRQNLLSVSKMTDKGYEVHFRKNEAIIMKNNKVWLSA
FT                 KRYGNLYYLNTEKQQANNVVNSNVKEIDLWHYRMGHLNENDLKGMAIKGKV
FT                 HGMKLNREEKLSECEICLSEKLTAKSYPSAKEKRTKDLLEIVHSDVCGPMR
FT                 TESISGYKYIATFTDDYSRYCKIYFLKRKNEVFEAFQTYKSFVENFTGKTI
FT                 KTLQSDNGLEYRNRAFDDFLEKHGIGRRLSVPHTPQQNGIAERQNRTLIEM
FT                 ARCMMKQSGAPPMLWAEAVNTACYIRNRCSTKGICGDIPYTYWTGKVPTVL
FT                 YLRIFGTKAYALVKGTNKGKFESRSQECILVGYAEESKAYRLYVPGARSII
FT                 TSSDVKFLSTAGFKSDYQEFYEDELQVDIGTGIAGIELQQQQESGSSSDAE
FT                 SEDQPQPQRFGKGRPRSVRTGQRGRPRKIYQQAAKEGNESSQEDSMGSSSQ
FT                 ETFEECEMAFAMDADDPTTIDDAKSSTDGIGWIRAAEDEFLAQVLNNTWQV
FT                 VERPSNRQIIGNKMVFRTKDDGTSKGKKKVRLVAKGYAQKPGEDFYESYSP
FT                 VARFTSVRLLAALAAQSDMEIHQMDVVTAYLNGELEEDVYMNIPEGFNEFM
FT                 EKLASRVPIGSNQKNPEAKYVKEAKQWIQAVKRMKNPVCLIKKALYGLRQS
FT                 GLRWYQKLTTKLKEIGLEPTEQDPCMFIKKEEKKILLVTIYVDDLLLTSNN
FT                 PKWLQQIKSHLSAEFQMKDIGRVKMCLGMEFQQDLQKHCVFISQAKYIDTI
FT                 LKRFGMTECKPALTPIEAKSNLKRPEAFDENEMKRYPYQSLIGTLMFLAVT
FT                 TRPDIAYAVNFLSQFNSSYNEEHWRAAKRVLRYLNGTKELGLLYSKNEEDL
FT                 YGVVDADWGANMTDRRSYSGQAFILAGATISWEARKQRTVALSSTESEYLA
FT                 MSEAVKEALYLKSLLERIGRKGRPIRIYNDNQSAQKLVKGFGFHPRTKHID
FT                 VRHHFIQEKHKSGDIEIEYMPTEQMPADVLTKGLSSSKHRDCISSLGVTVF
FT                 N"
XX
SQ   Sequence 4348 BP; 1512 A; 840 C; 1042 G; 954 T; 0 other;
     ggttatgggc ccagatcgcg atagtcaaga gaatgaaatg ctgaacgaag agttctgaga        60
     aaaagtgtaa attgtgaaat aggcaagcta tgaaaaatgg cgagcgcttt tataaaaatt       120
     gaaccgctaa gcgcggagaa ttatgacaca tggaaattga aaatgcgtgc agtgctcgtg       180
     aaaagcgaac tatggcagta cgtagatggt acaaacattt gtccaaaaaa aaatgaagat       240
     cgggatgcat ggaaaatgca agatgaaaag gcgcgcgcgg atatattact ctcgattagt       300
     acatcggaat tatatgtaat tgaaagttgc gcgacatcca gagattgctg gatacggtta       360
     caagaaacgt ttcaatcaac gggaccagcg cgaaaagcga gtctgctgaa acgtgtggca       420
     ttatcgagaa tgcaagaagg taccgacatg aggcaacatg tctgccttat atagtctgcc       480
     gggttcttac gaaacattta ggtgtgccat ggaaacaaga gacgatttgc cagggccaga       540
     agtgttacgc gtaaaaatat tagaagaggc agatgcgcga aagacaaaaa gtgattgtga       600
     agaacaaaac gcattatacg ctaaccgccg aaaaggcaaa gtagagaaga aagaaacgag       660
     aacttgctat aactgtaata agccgggaca cttagcaaga aactgcaaga atagacagaa       720
     aaatgaaaat aacgagaatc gcgcgagtaa aacggaaaat aagaaagaag cgctaaatat       780
     ttgcgaatac ggttattcag tggaaatgca aaacgaaatg tggtgcctag atagcggttg       840
     tacggcacat atgagttcaa acagaaatat gtttgagagt gtaacaaagg tcgaaaagac       900
     tttgcatttg ggggggatat gactcagaat aatatcccgt ttttttgtaa gttttatttt       960
     aaactgcgat aataatccgc aatctgcgat aataataata ataatgctgt actgcacagt      1020
     catcgcgtaa aaacgtgttt ctttttaaat tttgagatta tatcatctta taattctcag      1080
     acccaagggg ggggattcat ccccccgatc ccccccctat ctacgctact atgtttgaga      1140
     gtgtaacaaa ggtcgaaaag actttgcatt tggcaaataa taatacaact agtgtaaacg      1200
     gtattggcga cattaatatt gaagtcagaa acaaacaaca aaagaaagaa ataattctta      1260
     aagaagtgct tcatgtgtct gatttgcgcc aaaatttatt gtcagtttca aaaatgaccg      1320
     acaaagggta cgaggtacat ttccgaaaaa acgaggcaat tattatgaaa aataataaag      1380
     tgtggttaag cgcgaaacgg tatggaaact tatattattt gaataccgaa aaacaacagg      1440
     cgaacaatgt ggtgaattct aacgttaaag aaatcgattt gtggcattat cgtatgggac      1500
     acttaaacga aaatgactta aaaggcatgg ccataaaagg gaaagtccac ggtatgaaat      1560
     taaatcgcga agaaaaactc tcagaatgtg aaatttgctt aagtgaaaaa ctaaccgcaa      1620
     aaagttaccc gagcgcaaaa gaaaagagaa ccaaagacct attagaaatt gtacacagtg      1680
     atgtatgcgg ccccatgcga acggagtcca taagtggcta caagtatatt gccacgttta      1740
     ctgatgacta ctcccgttac tgtaaaatat atttcctcaa aaggaaaaat gaagtatttg      1800
     aagcttttca gacttataaa tcatttgttg agaatttcac aggcaagaca ataaaaacat      1860
     tgcagagcga taatggacta gaatatcgca acagagcctt cgacgatttt ctggagaagc      1920
     acgggattgg tcggcggcta tcagtgccgc acacaccgca gcagaacggc atagcggaga      1980
     ggcagaatcg cactctcatc gagatggcca ggtgcatgat gaaacagtcg ggtgcacccc      2040
     ctatgctttg ggcagaggca gtcaacaccg cctgttacat ccgaaacaga tgttcgacga      2100
     aaggaatatg tggtgacata ccatatacat actggactgg aaaagtccca acggtgctat      2160
     atctgagaat attcggcaca aaagcatatg cattggtgaa aggcacaaac aaaggcaagt      2220
     ttgagtctcg atcacaagaa tgcatattgg ttggctacgc tgaagaatcg aaagcctacc      2280
     gattgtatgt tccaggagca cgctcaataa tcaccagtag tgacgtcaag tttttgagca      2340
     cagcaggatt caaaagcgac taccaagagt tttacgaaga cgagctacaa gtggacatag      2400
     gcacaggaat agcaggcatt gagctacaac agcagcaaga aagtgggtca tccagcgatg      2460
     cagaatctga agatcaaccc cagccccaac gttttggtaa agggcgtccc agatcagtga      2520
     ggaccggcca gcgtggaaga ccacgcaaaa tataccaaca agcagcaaaa gagggcaacg      2580
     agagcagtca agaagacagc atgggctcat cctcccaaga aacgttcgag gagtgtgaga      2640
     tggcatttgc gatggacgca gacgatccaa cgacaatcga cgatgcgaaa agctcaacag      2700
     atgggatcgg ctggataagg gcagctgaag acgaattttt ggcgcaggtt ctcaacaaca      2760
     cttggcaagt tgtcgaacgt ccgagcaacc gacaaataat tggcaacaaa atggttttcc      2820
     gaaccaaaga cgatggcaca tccaagggta agaagaaggt gaggctagtg gcaaagggct      2880
     acgcacaaaa accaggcgaa gacttctacg aatcgtactc ccccgttgca cgattcacat      2940
     cagttagact attggcagcc ttagcggcac agtctgatat ggagatccac caaatggacg      3000
     tagtaacggc atacctaaac ggtgaactgg aggaagacgt gtacatgaac atcccagaag      3060
     gtttcaacga atttatggaa aaattggcat caagagttcc aattggttcc aatcagaaga      3120
     atccagaagc gaaatacgtc aaagaagcca agcagtggat tcaggcagta aagcggatga      3180
     aaaatccagt ctgcttaatc aagaaggccc tttatggatt gcgacagtca ggcttacgtt      3240
     ggtatcagaa gctgactaca aaactcaagg aaattggact tgagcctacc gagcaggacc      3300
     catgcatgtt tataaaaaag gaggagaaga aaattctact ggtgacgatt tacgtggatg      3360
     atttgctatt aacttcaaat aatccgaaat ggctgcagca aatcaaatcg catctcagcg      3420
     cagagttcca gatgaaagat atcggccgag tgaagatgtg tttgggaatg gaattccaac      3480
     aagatctaca aaaacattgc gtattcatct cacaagcgaa gtacatcgat accatattga      3540
     agagatttgg tatgacagaa tgcaaacctg cattgacacc aattgaagca aaaagcaacc      3600
     tgaagcgacc agaggcattc gacgagaacg agatgaaaag gtatccttac cagagtttaa      3660
     ttggtacttt aatgtttctt gcagtgacaa ctcgtccaga tattgcatat gcagtgaatt      3720
     ttttgagcca gttcaactct agctacaatg aagaacactg gagagcggca aaacgtgtac      3780
     tgcgctacct aaacggaaca aaggagctag gtcttctcta cagcaaaaat gaagaagacc      3840
     tatacggtgt ggtcgatgca gactggggcg ccaacatgac agatcggcgc tcatattcgg      3900
     ggcaagcgtt tatacttgcc ggcgctacca taagctggga ggcgcgaaaa cagcggactg      3960
     tggctctatc cagtactgag tccgagtact tagccatgtc cgaggcagta aaggaggctt      4020
     tatacctaaa gagtcttctg gagaggatcg gcagaaaagg cagacctata cgcatctaca      4080
     atgacaacca aagcgcgcaa aaactggtta aaggctttgg ttttcatccc cgcacaaagc      4140
     atatcgacgt gcgccaccac ttcatccagg aaaaacataa gagtggcgac atcgaaattg      4200
     aatacatgcc gacggagcag atgccagccg acgtcctgac gaagggatta agcagcagca      4260
     aacatcgtga ctgcatatca tcattgggcg tcaccgtatt taattaagtt gaataattaa      4320
     agttataaat tgctactttg agggggcg                                         4348
//
ID   Copia-8_DAn-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_DAn_;
KW   Copia-8_DAn-LTR; Copia-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-237
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 306-306 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 237 BP; 76 A; 48 C; 31 G; 82 T; 0 other;
     tgttgtaata tacgcatata tttgtatcaa agcagcaact tggcaactct gttccaatat        60
     gtattagttc ttaagttctt ttgttcaagt tcagttctaa ctcaaacgtc aagcacgaaa       120
     gtccaatgta agggacgcga tcatattatc aacaatttaa taaactgcac tttatattcc       180
     ttttcattct taataaccga ctaccacttt atctggctgt tgaccaaaat atcaaca          237
//
ID   Copia-8_DTa-I repbase;    DNA;    INV; 4637 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.10, Created)
DT   23-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4637
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (23-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, paired flanking LTRs are 99% identical to each
CC   other.
XX
SQ   Sequence 4637 BP; 1751 A; 633 C; 879 G; 1374 T; 0 other;
     ggttatgggc ccaggccacg tgcgtttaag aaattaaaag tgcataacaa ttgttctttg        60
     atttctaaga attagcataa cacgtgctaa tatacatata tgtacaaaat ggacaagtca       120
     aagcgaaaca ttaagccgtt tgacggcgag aaatattctg tgtggaagtt tagagttaga       180
     gcacttgaaa ttcctgacga gttggatgaa aattgggtaa aggcagagag gagagctaaa       240
     agtacactga tagaacattt gagtgactcc ttcttgagtt tcgcgacaag caacaacaca       300
     gctcgcgaaa ttcttagaag tctggattct gtgtatgagc ggaaaagtct ggcgtcacag       360
     ttatctgtac gcaaacggtt gttgtcgcta aagcttaaga gtgaaatggc attagttaca       420
     cattttgtgg tttttgatga actggttggc gaactgttgg cgtccggttg taaattagac       480
     gaaatggaca gaatttcgca cttgctgctt acattgccag catcttatga cggggtgatc       540
     aaagctatag agacactttc ggaggaaaat ataacgcttg cttttgtgaa aaatcgctta       600
     ctagaccatg aagtaaaaat aaaaaatgct aataacgata ctagtaaaaa agttatgcag       660
     gctgaggcca aaaataattt taacaataac tataaaacaa attataaaaa caataacaaa       720
     tataagttta atgctaaaaa ttataacaga aataataata cgcaaaaacc atataatata       780
     aaacaaaaac ttaacaacat aaactgtgga aaactaggac acatgaaaaa agattgttac       840
     agttataaaa aacaaataaa taatgaaaat aataaacaag tgcacactgc aacaaccaag       900
     ccaggcttcg cgttcatgct taagagttta aataaaatta ataataattt aaacgggaac       960
     gtgaatttta ttcttgactc gggtgctacc gaccacctca taaacgatga gtcattattt      1020
     gtggactatg ctgacctgga aactcccata aagattgctg taggggagta tatttttgca      1080
     accaagcgtg gagtcgtccg cttggaaaat gaatatcaga taactctgga agacgtgctg      1140
     tactgcggag aagttgcaga aaatctgatt tccgtaaaaa ggctacaaga ggctggagtg      1200
     actgtcatgt ttgatgaaaa gggagtaaaa ttgacgaaaa atggaaaaac tattgctgaa      1260
     aactcaggtg cgtacaatat accagttatt gaatttaaag catataaaat agatacaaaa      1320
     aataaagatt tatataagtt atggcatgag agactggggc atataagtaa aggaaaaatg      1380
     ttagaaataa aaagaaagaa tttatttagt gataatagcc tccttaatag tgttaatcct      1440
     accgacaata tttgcgaagc ttgtttgaat ggaaaacaag ccagattacg atttgaaaaa      1500
     tttaaaaata aagagcatat aaatagacct ctttttgtaa ttcattctga tgtctgtggt      1560
     ccgataacac caacaactat tgatgataaa aattactatg taatttttgt ggatcaattt      1620
     actcattatt gtgtcactta cttaataaaa cataagtcgg atgtgtataa catgtttaaa      1680
     gattttatct caaaaagtga agcccacttt aatcttaaag ttgttaatct ttacatagac      1740
     aatggtaggg aatatttatc taacgatatg cgtgagttct gtgttcagaa aggaattagt      1800
     taccatttga ctgtaccata tactccacag ttaaatggag tttcagagcg aatgatcaga      1860
     acaataactg aaaaggctcg agcaatggta aatggtgcaa aactagacaa atctttttgg      1920
     ggtgaggctg tgttaacggc aacatatatt ataaacagaa ttccaagtag ggcacttgga      1980
     gatcgtccaa caacgcctta cgagatgtgg cataatagaa agccgacttt aaaatattta      2040
     aaaatatttg gttcgactgt gtatgtacac aataaaataa gaaaacataa atttgatgaa      2100
     aaatcgttta aaaccatatt tgttgggtac gaaccaaatg gttttaaatt atgggatact      2160
     gaaaatgaga aattcatagt cgccagagac gtagtagtag atgagacaaa tatggttaac      2220
     tctagagttg ctaaaaacga agccctgaat gatagtaagg acaacaaaaa taatatattc      2280
     ccgaaagaaa gtaaggaaag taaccccctg aatgaaatta atgattgtgt tgaatataat      2340
     gtccagaatg agagtatgga atgttgtgaa ctcgagatcc tgaatgagag taaggattct      2400
     aaaaatgaaa atttccagaa tgagagtatg gaatgttatg aacaagagat cacgaatgaa      2460
     agtaaggact ctgaaaatga aaatatccag aatgagagta tggaatgttt tgaacaagat      2520
     atcctgaacg aaagtaagga tagtgataaa gatagtttcc cgaatgacag taaggaagtt      2580
     aagcgaccaa aaatgtcaac acatgaaatc gctaaagtaa ctaatgatgt aactagaaga      2640
     agcgacagat taaaaaataa accaagcata tcctataaag aagatgaaat aaatttaaat      2700
     aattttataa tgaatgctca cactgttttt aatgaagtgc cttgttcatt tgatgaagta      2760
     aaaagtagag aagataggtc tttatgggaa gaagctatta aggtcgagct ttctgctcat      2820
     acactaaata actattgtaa atgactattg ttaaaaagcc tgaaaataag aatattgtag      2880
     attgtaagtg ggtttttact ttaaagcatg atgaaatggg aaatccagtt aggtataaag      2940
     ccagattagt tgcacggggg tttacacaaa aatatcaaat agattacgat gaaacgttcg      3000
     ctccggttgc tagaatttcc agtttccgtt ttattttatc catcgcgaac caatataatt      3060
     ttaaaataca tcacatggat gttaaaacgg cctttcttaa tggtacgttg aaggaggaaa      3120
     tatacatgaa agttcctcaa ggaattgttt gcaattttga aaatgtatgt aaacttaaca      3180
     aatcaattta tgggctcaaa caagcagcta gatgctggtt tgaagtattt gagcatgcat      3240
     taaaggaatg tggatttaaa aattcatctg ttgatcgttg tatatatctt aaagacaatg      3300
     gcgatatcaa gaaaaatatg tatgttttac tatatgtgga tgacttagtt atagcgacat      3360
     acgacataaa aggattagaa aattttaaac aatacctaat gacaaaattt agaatgtctg      3420
     acttgggcga aatacgatac tttattggaa tgaaaataga agtgggccaa gatcagatat      3480
     ctttaagtca gtctgcttac ataaaaaagg ttttaagtaa gtttaatatg gaagattgca      3540
     agtctgtaaa tactccactt cctagtaagc tagattatga aatgttaaat tcagacgaaa      3600
     tttacgatgc tccttgtcga aatttaattg gtagtttaat gtacataatg ctctgtacgc      3660
     gaccggatat aactactgcc atcaatatcc taagtagata tactaataaa aataatattg      3720
     aactatggaa atgtttaaaa agggttttaa gatatcttaa aggaaatatt aatatgaaac      3780
     tcatttttaa gaaaaattta aattatgaaa atatatttgt tggctatgta gactcagatt      3840
     ggggtggaaa tcagaatgac agaaaaagta caactggtta tctttttaaa atgtttaact      3900
     ctaatttaat ttgttggaat acaaagagac agaattcagt agcagcttca tccacagaag      3960
     cagagtatat ggccttgttt gaagctgtca gagaagcatt atggcttaag tcccttttag      4020
     aaagcattaa tattaaattt gatgctccaa taaaaatatt cgaggataac cagggttgta      4080
     taagcatagc cagtaatccc tcttgtcata ggaggtcaaa acatatagat attaagtatc      4140
     atttttctag agaacaaatt gagaataatg ttatttccat tgagtatatt cctacagaaa      4200
     atcagctggc ggatattttt acgaaaccat taccttccgg aagatttatg gaactgagag      4260
     gaaaaatggg actacacaaa gatgactaaa ttcaaccaca acaatggaga gacaatgaaa      4320
     actattttac atttctagtt taattttttt tcatataaca ttttgataat ttataaatta      4380
     tgtttagcgt tatgtaactg aagttccttc tacattttaa tttaattaat attttaacat      4440
     atgcttaagt acatacatat atatctatat aatctattgg atgacctgat tgggttttat      4500
     ctgggttttc ccaatcctcg cagcaaatgc tgggtcatat tgtaatacct ccccagaata      4560
     caattcagcc acttttaatg aaaaacttat atattttgaa cgtatatttt aaaaataatg      4620
     taatttttga gggggcg                                                     4637
//
ID   Copia-8_DTa-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   23-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-8_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-267
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5636-5636 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 267 BP; 95 A; 48 C; 35 G; 89 T; 0 other;
     tgttgaacat aacagtttat tcgccatccc tactgttatg tacattacaa aaattaacat        60
     tatagaaatc cctacttttg aatattcggg cacacttttc gtttatcctt ctctttctga       120
     tcctcgtgta caagtggctg gttgtgtgca gaaaataaga aatataaatc aatatataaa       180
     acaacgatca taaaacatat ccatctaata atcgtgttct tatttaaact gataaaggac       240
     tgaacagata agcgtaatat ttcaaca                                           267
//
ID   Copia-8_DWil-I repbase;    DNA;    INV; 4008 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_DWil_;
KW   Copia-8_DWil-LTR; Copia-8_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4008
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1805-1805 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1380-1898] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..3926
FT                 /product="Copia-8_DWil-I_1p"
FT                 /translation="MTNIYPCEKLRGRENYDVWKRQAQSYLVIKGCWSVVC
FT                 NGPSEKEASLDERALAEITLMIESTNYAHIAKSKSAKEAWDALAQAFEDSG
FT                 LTRKVELLKKLVQLNLEQFDSTQEYVNEMIMTAIKVNNAGLCISDEVTASL
FT                 MLAGLPSEYQALVMAVENSKSTLTVDNVKGMLLQDVKFDNNAGINSNAMYS
FT                 RASKQAKRDKAKLNNRFGKTVICYACGGKGHMRKVCPSVVQEERSDEEKAA
FT                 LASNTSLLVNANPHVGKSETVWYIDSGASTHMTNDRRLLSNESEVSNKSVI
FT                 IANKEKLHVKSRGDVGILLHVNGKSVKGNIHDVEYVPNLCGNLLSVSQMAK
FT                 NGKRLVFEKNHCYIFEKNILKATGYLQNDLYRLNCELPKVEKALVAINGFE
FT                 LWHRRMGHICDTKLQLVKEATDGVEYSVNESCRDKCIVCLKGKQTRMISKQ
FT                 PGIRAEGLLDLVHSDVLGPLRVKSFSGARFMLVFVDDYSRKVFVYSIKEKS
FT                 DVVRKFEIFKNLAENQTGRKIRILRSDNGKEYCNQELEHFLQNAGILHQTT
FT                 APYNPEQNGVAERMNRTLLERVRCMLLDSALPNIYWAEAANTAAHITNRMP
FT                 CRGNSSSPEELWTGSKPNLKYMRIFGCTALAHIPKQKRGKLDAKSEECIFV
FT                 GYSDTSKAYRLYRKSDRKFLISKDVVFIENNCRDSTQHFGEMGTVEDNCRD
FT                 GKQSLEAEPLYQEDLLKQSTSEFESWNTDTEETVDAEELKTTAGHVPDAFG
FT                 VRRSKRIANKLEEHHLCCVVSQGDDPLTVTEAIKSKLADSWEDAMKSEMLS
FT                 HELNNTWTLTELPKGKVAIQSKWVFKTKRESGDLVPRYKARLVVKGFSQKE
FT                 GIDYTETFAPVVRYTSMRVLFAAAAKYGLTIYQLDAVTAFLNGDLQEEIYM
FT                 RQPEGFDDQSGKVCRLNKSLYGLKQASRVWNEMLNKVLLGFGLQRGEVDQC
FT                 VYHYVTGSTMVYVAVYVDDILIFSNNKQMVAKIKGELSQKFNMKDMGEVSS
FT                 ILGMRVRHNKTEGTIKIDQSNYIAGILKRFGMDDCKAVSTPVDVAQSLSAD
FT                 MGPQSEADIEDMKKVPYLEAIGCLLYAAQNTRPDISFAVNMLSRFSSNPGM
FT                 VHWTAVKRVMRYLKGTLNKCITYHATGDDLKGFCDADWGGDLDGRRSTSGY
FT                 IYVQQGGAISWCSQRQRTVALSSTEAEYMAAVSAIQEAIWLLRLQKELYLI
FT                 DTNKIVLCCDNKSALHIIRNNSFSPRTKHIDIKVKFIREWLTNGSIRIEYI
FT                 PTEDMPADALTKPVPASKIALLGSRMGLT"
XX
SQ   Sequence 4008 BP; 1287 A; 743 C; 970 G; 1008 T; 0 other;
     cgtcttttaa taggttatgg gcccaggcca cgcatacaag aaaagacaaa agaggaatga        60
     ccaatatata tccgtgtgag aagttaaggg gccgcgaaaa ctacgatgtt tggaagcggc       120
     aggcccaatc ttacctagtg atcaaaggtt gttggagtgt ggtgtgtaat ggaccatcag       180
     agaaggaagc gtcactagac gagagagctc tcgcggagat tacactgatg attgagtcga       240
     ccaactacgc acacatcgcc aaatctaaat cagcgaaaga ggcttgggat gctttggcgc       300
     aggcgtttga ggacagcgga ctgactcgga aagtagagct gcttaaaaag ttggtacagt       360
     taaacctgga gcagtttgat tcgacacagg agtatgtcaa cgaaatgatt atgactgcca       420
     ttaaggtaaa caatgctggg ctttgcataa gtgacgaggt aacggcatca ctgatgcttg       480
     ctggattacc tagtgagtac caggcattgg tcatggcagt agagaactct aagtctacat       540
     taactgtcga caatgtaaaa ggtatgttgc tacaagacgt gaagtttgac aacaacgctg       600
     gaatcaattc aaatgctatg tactcaagag catcaaagca agctaagagg gacaaagcaa       660
     agttaaataa ccgttttggg aaaacagtta tttgctacgc atgcggtggt aaagggcata       720
     tgcgaaaagt atgcccaagc gtagtgcaag aagagagaag cgatgaagag aaagcagctc       780
     ttgcatcgaa tacttcgctc ttagtaaatg caaatccaca tgtaggcaag agcgaaacag       840
     tgtggtacat tgattctggt gcttcaactc acatgacaaa tgatcggaga ttgctaagca       900
     acgaatctga ggttagcaac aaaagcgtaa taatagcgaa caaagagaaa ctgcatgtaa       960
     aaagcagagg cgatgtagga attttgttac atgtaaatgg caaatcagtt aaaggtaata      1020
     ttcatgatgt ggagtatgtt ccgaatttgt gcggaaatct gttatctgta agccaaatgg      1080
     caaaaaacgg gaaaaggctt gttttcgaaa agaaccattg ctacatcttt gagaaaaata      1140
     ttttgaaagc cactggctat ctgcaaaatg atctgtatcg actaaattgt gaactgccaa      1200
     aggtagagaa agccttggtc gcaataaatg gattcgaact atggcatcgt aggatgggcc      1260
     acatttgtga cacaaaatta cagctggtaa aagaagccac cgatggtgtt gaatactctg      1320
     ttaatgaatc gtgccgggat aaatgcattg tgtgccttaa aggaaaacaa actcgtatga      1380
     taagcaagca gcctggaatc cgtgccgaag gtcttttaga tcttgtccac tcagatgtgc      1440
     ttggaccatt gagagtcaag tccttttctg gtgcaagatt tatgcttgtc ttcgttgatg      1500
     attactctcg gaaggtgttt gtgtactcaa ttaaggagaa gtcagatgta gtcaggaagt      1560
     tcgagatttt caaaaatctg gcagagaacc aaacaggacg aaaaattcgc attttgcgtt      1620
     ctgacaatgg gaaggaatat tgcaaccaag agcttgaaca ttttttgcag aatgcaggta      1680
     ttctgcatca gactacagcg ccgtataacc ctgagcaaaa tggagtcgca gagcggatga      1740
     atcgcacact cctggagaga gtgcgctgca tgttgctgga ctcagcattg cccaacattt      1800
     attgggccga agccgctaac actgcagctc atataactaa ccgaatgcct tgtcgtggaa      1860
     atagctcatc tcctgaagaa ctttggactg gatctaagcc aaacttaaag tatatgcgta      1920
     tatttggttg tacagcattg gctcatatcc caaagcaaaa gcgtgggaag ctagatgcta      1980
     aatctgaaga atgcattttt gtaggataca gcgacacttc gaaagcatat cgtctgtaca      2040
     ggaaatctga tcgtaagttt ttaataagta aggacgtcgt tttcatcgaa aataattgca      2100
     gagactcaac acagcatttt ggcgaaatgg gcaccgtaga ggataattgc agagacggta      2160
     aacagtccct ggaagcagaa cctttgtatc aagaagacct gttaaagcag tctacgtcag      2220
     agtttgagtc gtggaatacg gatacagaag aaacggtcga tgctgaggaa ctgaagacta      2280
     ccgctgggca cgttccagat gcatttggtg ttcgaagatc aaaaaggatt gcgaataagc      2340
     tggaagagca tcacctatgt tgtgtagtct cgcaaggtga cgacccacta acagtaacag      2400
     aggcaataaa gtcgaaacta gcagattcat gggaagacgc aatgaagtcg gaaatgctct      2460
     ctcacgaatt aaataacact tggacgctaa cggaattacc aaagggcaaa gtggcgatac      2520
     agtcaaaatg ggtttttaaa acaaaacgag aatctgggga cttggtgcct cgctataagg      2580
     caagacttgt tgttaaagga ttttctcaga aagagggtat tgactacacg gagacgtttg      2640
     caccagtcgt gcgatacact tccatgcgag tgctgtttgc tgcagctgct aagtatgggt      2700
     tgacaattta tcaactggat gctgtgacag cttttcttaa tggcgattta caagaagaaa      2760
     tctacatgcg tcagcctgaa ggcttcgacg atcaatcagg aaaagtctgt cgcctcaata      2820
     aatcgctcta cgggcttaag caggcaagca gagtctggaa tgaaatgctg aacaaggttc      2880
     tactaggctt tggtcttcaa cgtggcgaag tggatcagtg tgtataccat tacgtaactg      2940
     gatccaccat ggtatatgtg gcagtatatg ttgacgatat attaattttc agcaacaaca      3000
     aacaaatggt agctaaaatc aagggcgagc tatcgcagaa atttaacatg aaagatatgg      3060
     gcgaagtttc gtcgattttg ggcatgcgtg ttcgacacaa taagaccgaa ggcacaataa      3120
     aaattgatca atctaattat attgcaggaa ttctaaaaag attcggaatg gatgattgca      3180
     aagcagtgtc aacgccggtg gatgtcgcac aaagtctttc agctgacatg ggaccccagt      3240
     ctgaagccga cattgaagat atgaagaagg ttccgtacct agaggctatt ggttgcctac      3300
     tatatgctgc ccagaacact cgtcctgaca taagttttgc tgtcaacatg ttgagtcgct      3360
     tctcttccaa tccaggaatg gttcactgga ccgccgttaa acgtgtgatg agatatctga      3420
     aaggaactct caacaaatgc atcacatatc atgctactgg agatgattta aaaggttttt      3480
     gcgatgctga ttggggcgga gacctcgatg gaaggagatc aacatcagga tacatttatg      3540
     tacaacaagg tggagcaata tcgtggtgtt cccaacggca gaggaccgtt gcactttcct      3600
     ctacagaagc agaatatatg gcagcagtat ctgccatcca agaagccata tggttattgc      3660
     gcctgcagaa ggaactttat ctcattgata ccaataagat cgtgctatgt tgtgacaaca      3720
     agagtgcgtt gcacatcata aggaataatt cattttctcc aagaacgaaa catatagata      3780
     taaaagtcaa gtttattaga gaatggttga ccaatggctc tatccgaata gagtacattc      3840
     ctaccgagga catgccggca gatgcactaa caaaaccagt cccagcttct aaaatagcgt      3900
     tgttaggatc cagaatgggg ttaacctaat ttcttaatta aacaaaagaa ttgtcattat      3960
     cagaatatta atattatatc tgccagatat tcaattaagg gggtatat                   4008
//
ID   Copia-8_DWil-LTR repbase;    DNA;    INV; 105 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_DWil_;
KW   Copia-8_DWil-I; Copia-8_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-105
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1806-1806 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 105 BP; 34 A; 26 C; 8 G; 37 T; 0 other;
     tgaaaagtac tttctatctg gcaactctta caccctatat ttgtaccata tctaattact        60
     cattactcat taaacagtct tctatcatct tgcaaactga acaca                       105
//
ID   Copia-8_LH-I repbase;    DNA;    INV; 4033 BP.
XX
AC   ADOQ01012242;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_LH_;
KW   Copia-8_LH-LTR; Copia-8_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4033
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012242; Positions    2520    6552.
XX
CC   Positions [1529-2026] - Integrase core
CC   'TGCAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..3952
FT                 /product="Copia-8_LH-I_1p"
FT                 /translation="MDKIAVTKFNGTDFGLWKYQMSVFLEYHGLYDVTSGK
FT                 DVRPQERFENWDATDKKAKYALTQSLELSQIRHIVNCRTSNEIWTRLEALY
FT                 EQKNETSVHLLLARFFEYKMDPNKMTVSEHVSNVEQMARQLEDVGHKQDET
FT                 TIITKILHSLPASFRSVISAWDSVPRNEQKLANLLPRLMKEEQLAKSFGEL
FT                 KISSEDESVALWAKKSKHIKKPKQDKKTFKGKCFNCDEEGHTARQCKKPKR
FT                 ESKQANSASQGKRSSHGDAFTASFSTAQRERPNEDCWIADSGASNHMTFRR
FT                 EWFETFKAIDDKSVPITVGNKNIVYAGGQGNIRVISTVNGKEREGTLYDVL
FT                 WIPDLGRNLLSIGASAKHGNRTIIEEDQIKIVNKRNQTLMTGYSYERNLYT
FT                 MNTQVVLPEHEAHHAENDVQPLSVWHERLGHVSYKKLEQMATSGTVKNVNV
FT                 AKISSSEKFCEACIFGKQTRKQFNESDTRAKQPGELIHFDVCGPMSTPSLG
FT                 GNTVLVVFVDDYTGFLIVRPMKNRTEIVDAVESVIAIFNSYGHTIKRFRSD
FT                 NAREFISKDMKRIMNRNKIVHEFSTPRAPQQNGRAERQIRTIVETGRTLLA
FT                 AADLPLSLWAEAGRTAAIIRNRIPLDRLGGKTPWEMFTGEQPNVSFLRIYG
FT                 SDAYAHIEDQFRSKFDKKSKKLVLVGYEPGSKAYRLWERGTKNVYVRCNVK
FT                 IVEPRPMAAVKFIEEEDIEQLEIKQEKQDTDSEQDSSSSKDEAIATRTRSK
FT                 EKRQQTERITENNGIAHRTRSKTQHVGTCSCMLAEIKIPEDYKEAIESPDR
FT                 KQWEQAMCEELDSLRRNNTWQLVELPKGRRAIQNKWVFRVKIKPNGDADRY
FT                 KARLVVKGCSQKQGVDFSETYSPVTRYDSIRMLIAVATHKDYEMVQFDVKT
FT                 AFLYGDLDEELYMLQPEGFDDGSRKVCKLLRSLYGLKQSPLQWHKKIDSVL
FT                 GELDMKPTNYDPCVYANEEKDLLIALYVDDGLVIGASIDKINKLLKLLKVR
FT                 FEITQNEARFYLGLEIDRDRPNKQTRLHQTAYTIKMLEKFNMSNCNPVSVP
FT                 MDPNVVLKRELDEDGNIIKDEEIPYRQLIGSLMFLAIGSRPDISFAVSKLS
FT                 QFLETPTATHWQAAKRVLRYLQDTKSLGLTYGTKIDEDSQLEAFSDADYAS
FT                 CMDTRKSVSGVLLMLNGGPVIWSSKKQTIVATSTTDAEYIAAHNASKEVVW
FT                 TRGLLREIGYEQVKPTTLYCDNTAAETLIKNPTFHRRTKHVDIKYHYVREV
FT                 VKNGQLMVTQFPAMNNGGFI"
XX
SQ   Sequence 4033 BP; 1390 A; 784 C; 908 G; 951 T; 0 other;
     ggttatgggc ccagttggtc gcgtctacgc ccagtgaata ggttatgtgc attgtagtta        60
     cgcacacttg agttaaggaa aaactgtctg tcttacaaaa aggaaagcca tggataaaat       120
     tgccgtcacg aagttcaatg gaacagattt cgggctgtgg aagtaccaga tgtcagtctt       180
     cctcgaatat cacggattat atgatgtcac gagcggcaag gatgtcagac cacaagaacg       240
     tttcgaaaac tgggatgcta cagataagaa agcgaagtat gcattgactc agtcgcttga       300
     gctatctcag atacgtcaca ttgtaaattg cagaacctca aacgaaatct ggacgaggct       360
     tgaagctctg tacgagcaaa agaacgaaac aagcgtgcat ctgttgttag caagattctt       420
     cgagtataag atggatccaa ataaaatgac ggtgtcggaa cacgtcagta acgttgaaca       480
     gatggctcga caacttgaag acgttggcca taaacaagat gaaacaacaa taattacgaa       540
     gattctgcat tcgttaccag caagttttcg ttctgtaata tcagcttggg attcagtacc       600
     aagaaacgaa caaaaattag ctaatctgct gcctcgtctc atgaaagaag aacaactggc       660
     taaaagcttc ggtgagctca agataagtag cgaagatgaa tctgttgcat tgtgggctaa       720
     gaagtcaaag cacatcaaaa agcctaagca agataagaaa acattcaaag gaaaatgctt       780
     caattgtgat gaagaaggac atacggctcg acaatgcaag aaacctaaac gagaatcgaa       840
     gcaagctaac agcgcatcac aaggtaaaag atcgtctcat ggcgatgcat tcacagcatc       900
     attctctacg gctcagcgcg aacgcccgaa cgaagattgt tggatagctg attcaggagc       960
     tagcaatcat atgacgtttc gacgagaatg gttcgagaca ttcaaggcga ttgacgacaa      1020
     gtctgtaccg ataactgtag gaaacaaaaa cattgtttat gcaggtggcc aaggtaatat      1080
     tagagttata tcaacggtaa acggtaaaga acgcgaaggt acactatatg acgtactctg      1140
     gattccggac ttaggtcgta atctattaag catcggcgca agcgcaaaac atggcaacag      1200
     aacaatcatc gaagaagatc aaatcaagat cgtcaacaaa agaaaccaga cactcatgac      1260
     tggttacagt tatgaacgaa atttgtacac gatgaacaca caagttgtgc taccagaaca      1320
     tgaagctcat catgccgaaa atgatgtaca accgctgtcg gtgtggcacg aacgactcgg      1380
     tcacgtgagc tataagaaac tggaacaaat ggctactagt ggcacagtta aaaacgtgaa      1440
     cgtcgcaaag atcagtagta gcgaaaagtt ttgtgaagcc tgcatctttg gcaagcagac      1500
     acgcaagcaa ttcaacgaat cggacactcg tgcaaagcag ccaggtgaat tgatacattt      1560
     tgatgtctgc ggtccgatgt caactccgtc tctcggtgga aatactgtat tggtagtttt      1620
     tgtagacgac tacactggat ttctaatcgt tcgtcctatg aaaaatcgca ctgaaattgt      1680
     cgacgccgtc gaaagtgtta ttgcaatttt taattcgtat ggacacacaa taaagcgttt      1740
     tcggtccgat aacgcacgag aatttattag caaagacatg aagcgaatta tgaacagaaa      1800
     caagatagtt catgaatttt cgacgccgcg tgcaccacaa caaaacggtc gtgctgaacg      1860
     acaaatcaga acaatcgtcg agactggacg cacgttgctg gctgcagcag acttaccttt      1920
     atcgctttgg gccgaagctg gaagaacagc cgcaattatt cggaaccgaa tacctttgga      1980
     tcgacttggt ggcaaaacac cgtgggagat gttcacaggt gaacaaccaa acgtcagctt      2040
     tttacgtatc tatggtagtg atgcgtacgc tcatatcgaa gatcaattta gaagcaaatt      2100
     cgataagaag tcaaagaagc ttgtacttgt gggttatgaa ccaggctcga aagcttatcg      2160
     tctctgggag cgcggcacga agaacgtgta tgtgcgatgc aacgttaaaa ttgtcgaacc      2220
     tcgtccaatg gcagccgtta aattcattga agaagaagat atagaacaat tagaaataaa      2280
     acaggaaaaa caagatactg actccgaaca agattcaagt tcaagtaaag atgaagcaat      2340
     tgcgacgaga acccgctcaa aggagaaaag acaacaaact gaacgaataa ctgaaaacaa      2400
     tggaattgca catcgaacaa gaagcaaaac tcaacatgtt ggcacatgtt catgcatgtt      2460
     agctgaaatc aagatacctg aagactacaa agaagcaatc gaatcacctg acagaaaaca      2520
     gtgggagcaa gcaatgtgtg aggaacttga ttcgctaaga agaaataata catggcaatt      2580
     agttgaacta cccaaaggac gtcgagcaat tcaaaacaag tgggtttttc gggtcaaaat      2640
     taaaccaaac ggtgacgccg accgatataa agcaaggctc gtcgtaaagg gttgcagtca      2700
     aaaacaaggc gtcgatttca gcgaaacgta ttctccagta acacgctatg actcaattcg      2760
     aatgctgata gctgttgcaa ctcacaagga ttacgagatg gtacaatttg acgtcaagac      2820
     cgccttttta tatggtgatt tagacgaaga gttatatatg ctacaacccg aaggcttcga      2880
     cgatggaagt agaaaagtat gtaaactttt gcgcagctta tatggtctaa aacaatcacc      2940
     gttacagtgg cataagaaaa tcgactctgt actaggagaa ttagacatga agccgaccaa      3000
     ctacgatcct tgtgtttacg caaatgaaga aaaggatttg ttaatcgcac tctatgtaga      3060
     cgatggtcta gtaattggag catcaataga caaaattaat aaactattga aattacttaa      3120
     agtgcgattt gagattacac agaacgaagc aagattctat ttaggacttg aaattgaccg      3180
     tgatcgacct aacaaacaga cacgtctaca tcagacagca tataccatta agatgcttga      3240
     aaaattcaat atgtcaaatt gtaatccagt cagcgttcct atggatccta atgtcgtgct      3300
     aaaacgagag ctcgatgaag atggcaatat tatcaaggac gaagaaattc catatcgtca      3360
     gttgattggc tcgctgatgt ttttggcaat tggatcaagg cctgacatat cgtttgcagt      3420
     aagcaaactt agtcagtttc tggaaacgcc aacagcaaca cactggcaag cggcaaagcg      3480
     tgtacttagg tacctacaag atacaaaatc actgggtctc acttatggta caaagattga      3540
     tgaggacagt caattagagg ccttctcaga tgcagattat gcatcttgca tggatacgcg      3600
     aaaatcagtt tctggcgtcc tgttgatgct gaatggtggc ccagttattt ggtcatctaa      3660
     gaagcaaaca atagttgcta catcaactac agatgccgag tatatagcgg cccacaatgc      3720
     atcgaaggaa gttgtgtgga ctcgtggcct attacgagaa attgggtacg agcaagttaa      3780
     accaacgact ctatactgcg ataatacggc agcagaaaca ttgatcaaga atccaacgtt      3840
     tcacaggaga acaaaacacg tggacataaa atatcattat gtacgagaag tagtcaagaa      3900
     tggacaacta atggttacgc agtttccagc gatgaacaac ggcggattta tttaacaaaa      3960
     gctctttcaa agcaaaaatt tatagcaaat tgcaaacttt tgaatatgac tttgtaaact      4020
     cgtcgagtgg gag                                                         4033
//
ID   Copia-8_LH-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   ADOQ01012242;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_LH_;
KW   Copia-8_LH-I; Copia-8_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-268
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012242; Positions    2252    2519.
XX
SQ   Sequence 268 BP; 66 A; 54 C; 50 G; 98 T; 0 other;
     tgttgaagat aattcgactc gttttctttt agatggcgct ttttcgttcg tttccgcgct        60
     gctgtttcgg gcgtgcataa taaccctttt tttgtttagt agagtcgact ctctgtaaaa       120
     ccttcgaaca cacgttggtg gttgacaacg ccccttgttg tgcatataag tattggctta       180
     ttctaataat aaaaggaatt cagtttctta caaccgaaag tggtgacatt tttaatatac       240
     aagcctattc acatccattt ccgtaaca                                          268
//
ID   Copia-8_LMi-I repbase;    DNA;    INV; 4253 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4253
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3087-3087 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(245..1318,1284..2150,2036..2920,2940..4217)
FT                 /product="Copia-8_LMi-I_1p"
FT                 /translation="MDSIKSQLELLSEDHYGNVNYVSWRFKLDLTLKSKKL
FT                 YSVATGQEVRPTGGETEQHVKSWIEKDNEAQIFIGLNVSSNIAKKIANCKS
FT                 ASQMLKKLETLYGRKSDLTIEGLQRNFFSYKYDTSKSVIQNCMQIQEYAED
FT                 LAAEGEAVKESWIMSRILGMLPPKLHHFRTAWDNVAASNKNIDTLFERLRL
FT                 EEDRLNETEQSHMSQNALVSKQNKCFVKASQQEKPTVQCFKCGKNGHVKKH
FT                 CRNKPCAKYLAYCRDNYSCNNCKQKGHFARECPNVTLDRNETNEKLDSKES
FT                 KGFKRKALVNVGLSIANINEINLQSNRENTWYQDCGATQHMTFRKDWLINY
FT                 VKLDHCTKVVDWRCYIIVRKLLIGDATELEGIGVGDIELEAFDGEQWYDIV
FT                 LENVLYVPNINFNLFSVTQVLDKGYVQSANADISVFKTADDLETVAIGRRE
FT                 QQLYKMLFRTKFNKCMTAISIKQWHEKLAHQNVAYVRDVLNRNGIDYIDDW
FT                 NDYVCVGCIYGKQHHKSHPTNMKIAENTLDVIHVDLCEMNLMSLGGAKYFL
FT                 LFKDDFSHFRTVYFLKTKDEAVAKLEAFMKMVENQFGKKVKCLKSDNRTEI
FT                 KNALTKKLLDELGVFHIGPTHTLLNKTEELKEKXALLSSQHDRQYMHESTW
FT                 SFSHRTNTYTPQQNGRIEREMXTVVESARSAIHARKLNENLWAEAINYAVF
FT                 TLNQTGRSSVKGKSPAELRFGRRIDLTKMRSFGCDCYVLIEDHKRRKTEKK
FT                 SKKGIFVGYDLDSPCYRIYLPDEMDVVASDNVIFDERTEDKEEATVVKTFT
FT                 GEKRNEIEYQHPEGNLISNDSLSDDSEECSVSSDYKIQNRVSPPKLRDRQN
FT                 LRQPARFSDYEMDIVQHNNNAKFGMIGEVEDISISNALKDKNWYKAMSDEY
FT                 KSLIKLKTWTLVELPKNVKPLTCRWVLRKKQDGRTKPDARRRTGLSETFSP
FT                 VARYESIRLLLSLAATNKMKIITFDVKTAFLYSDLQEEIYMNQPDGFNDGT
FT                 NRVCKLKKSLYGLKQAPKNWNEKFSNYLMTLGFVNTDDDPCIYYNEDRSII
FT                 IALFVDDGLVIGRRTDSITEVLNKLTQKFEITFDRVFHNQISYLGMEIKIS
FT                 SQGIFVDQSMYTKKILKQFKFDDMNPVATPMERGMVTDKENLVNDAPLESN
FT                 EPYREAIGSLLYLATISRPDISFAVNYLSRFSNKPMVSHWKMVKRIFQYLK
FT                 GTIKFGIFFDGGSTLLAYADSDYGGDISTRCSTSGVLIMRGGPIVWYARKQ
FT                 HLVATSTAEAEYRAAVSSIDDICWIRRLGQELGISGLNEPTELCIDNQAAI
FT                 HMLKNTYEGKITRGKKHIDIPRKFIQQHIGTTIKLKHVESSSQLADILTKP
FT                 LTQSV"
XX
SQ   Sequence 4253 BP; 1541 A; 670 C; 882 G; 1158 T; 2 other;
     ggttatgggc ccagatacac gcaagcagaa aataagatac gtaactattt gtcagctatt        60
     attaaggagc acataatcag gtcagtgatg cattgcatat cagtatatgg tcgaaagtat       120
     cgtcagctgg gaagtctgtt tcagtgaatt aaaaatctgg aattaatttg ttaattgtca       180
     aagttcagtc agaaaagcta tttgagttta ttaagttcac cgacagtaaa tttgtctgtt       240
     atcaatggat tctattaagt cacaactgga actattgtca gaggatcatt acggaaatgt       300
     caattacgtc tcttggcgat ttaaactaga cttaacatta aagtcgaaaa agttgtattc       360
     agtagcaact ggacaggaag ttagaccgac aggaggagaa actgaacaac atgtaaagtc       420
     ttggatcgag aaagataatg aagcgcaaat ttttataggt ctgaatgtca gtagcaacat       480
     agctaagaaa attgcaaatt gcaagtctgc tagtcaaatg cttaaaaagt tagaaacgct       540
     gtatggcagg aagtcagatt taacaattga aggtttacag agaaatttct ttagttacaa       600
     atacgatact agtaagtcag ttattcaaaa ctgtatgcag attcaagaat acgcggaaga       660
     tttagcggca gaaggcgaag ctgttaaaga gagctggatt atgtcgcgaa ttctcggaat       720
     gttaccgcct aaacttcatc acttccgtac tgcatgggat aatgtagcag cttctaacaa       780
     aaatatcgac acactatttg aacgcttgcg cctggaagaa gacagattaa atgagacaga       840
     acagtcacac atgtcacaaa atgctctcgt ctcaaaacaa aacaaatgtt ttgtcaaagc       900
     aagtcagcag gaaaagccta cagttcaatg ttttaaatgc ggcaaaaacg ggcatgtaaa       960
     gaaacattgt agaaataaac cttgtgccaa atatttagca tactgtaggg acaattattc      1020
     atgcaacaac tgcaaacaaa agggtcattt tgccagagaa tgtccaaatg taacattaga      1080
     cagaaatgag acaaacgaaa aacttgacag caaagaatca aaaggtttta aacgtaaagc      1140
     attagtcaat gttggattat ctattgccaa tataaatgaa ataaatttgc agtcaaatcg      1200
     agaaaatact tggtatcaag attgtggtgc cacgcaacac atgacattta gaaaggactg      1260
     gttaataaat tatgtaaaat tagatcattg tacgaaagtt gttgattggc gatgctactg      1320
     aattagaagg tattggagtg ggagacattg aattagaggc gtttgatgga gaacagtggt      1380
     atgacatagt tctggagaat gttttatatg tgccaaatat aaactttaat ttattttctg      1440
     ttacacaagt tttagataag ggctatgttc agagtgcaaa tgcagacatt tcagttttca      1500
     aaactgctga cgatctggaa actgtggcaa taggcagacg cgagcaacag ctgtacaaaa      1560
     tgttatttcg tacaaagttc aacaaatgta tgacagcaat ttcaattaaa cagtggcatg      1620
     aaaaattagc acatcaaaat gtcgcatatg ttagagacgt actaaataga aatggcattg      1680
     attatattga tgactggaat gattatgttt gtgttggttg tatctatggc aaacaacatc      1740
     acaaatctca tccgacaaac atgaagatcg ctgaaaatac cctggatgta attcatgttg      1800
     acttgtgtga aatgaatctc atgtcgttag gaggagcaaa gtattttctg ttgtttaaag      1860
     atgatttttc ccatttccga actgtttatt ttctcaagac gaaagatgaa gctgttgcca      1920
     aattagaagc tttcatgaaa atggtagaaa atcagtttgg caagaaagta aaatgtttaa      1980
     agtctgacaa caggaccgaa atcaagaatg ctctcactaa aaagcttcta gatgaacttg      2040
     gagtttttca cataggacca acacatacac tcctcaacaa aacggaagaa ttgaaagaga      2100
     aatgmgcact gttgtcgagt cagcacgatc ggcaatacat gcacgaaagc tgaatgagaa      2160
     tctgtgggcc gaagcaataa attatgcggt ctttacgtta aatcaaactg gaagaagttc      2220
     agtaaaagga aaaagtcctg ctgaattgcg gtttggacga agaatagatc ttactaaaat      2280
     gagaagtttt ggatgtgact gctatgtttt gatcgaagat cacaaacgaa gaaagactga      2340
     aaagaaatcg aaaaaaggaa tcttcgtcgg ttatgatttg gattcgccct gttacagaat      2400
     atatctacct gatgaaatgg acgttgttgc ttctgacaat gtcatatttg acgaaagaac      2460
     agaagataaa gaagaagcta ctgtagtaaa aaccttcaca ggagaaaaga gaaatgaaat      2520
     cgagtaccag catccagaag gaaacctgat atctaatgat tcactgtctg atgactctga      2580
     agagtgcagc gtgtcatctg attataaaat acaaaataga gtctcgccac caaaactacg      2640
     tgatcgacaa aatcttagac agcctgctag attttcagac tacgaaatgg atattgtgca      2700
     acacaataat aatgcaaaat ttggtatgat aggcgaagtt gaagacattt cgatttcaaa      2760
     tgccttgaaa gacaaaaatt ggtacaaagc aatgtctgat gaatacaaat ccctaataaa      2820
     attgaaaact tggacacttg tagaacttcc aaagaatgta aaacctttaa cctgtcgctg      2880
     ggtattacgt aaaaagcaag acggacgtac aaagccagac tagttgcaag aggttttgag      2940
     caagaagaag gactggacta tcagaaacct ttagtcctgt agcacgttac gaatcaatta      3000
     gactgcttct tagtcttgca gctacaaata aaatgaaaat aataactttt gatgtaaaga      3060
     cagcatttct atacagcgat ctgcaggagg aaatctatat gaaccaacct gatggattca      3120
     atgatggtac aaatagagtt tgtaaactga agaagagttt atatggccta aaacaagctc      3180
     caaagaactg gaatgagaaa ttctcaaatt atctaatgac attaggattt gttaacactg      3240
     atgatgatcc ttgtatctac tataatgaag acagaagcat cattatagcc ttgtttgttg      3300
     atgatgggct agttattgga aggaggacag acagcatcac tgaagtgttg aacaagctga      3360
     ctcagaagtt tgaaataaca tttgacagag tatttcataa tcaaatatca tatcttggca      3420
     tggaaattaa aataagttca cagggaattt ttgtagatca gtctatgtat acaaagaaaa      3480
     tcttaaaaca gtttaagttt gatgatatga atccagtagc tacacctatg gagcgtggaa      3540
     tggtgacaga taaagagaat cttgttaatg atgcaccact ggaaagcaat gaaccatata      3600
     gagaagctat tgggagtcta ctgtaccttg caacaatatc tcgtccagac atcagttttg      3660
     ctgtcaatta cctaagcaga tttagtaata aaccaatggt tagtcactgg aagatggtaa      3720
     aacgaatttt tcagtacctg aaaggaacta taaagtttgg tatattcttt gatggaggtt      3780
     caacattgct tgcctatgct gattctgatt atggaggtga tatctcaact agatgctcca      3840
     ctagcggagt tcttatcatg cgaggaggac ccattgtctg gtatgctcga aagcagcatc      3900
     ttgtggcaac ttcaactgct gaagcagaat atcgagctgc tgtctcttca atcgatgata      3960
     tatgttggat acggcgcctt ggwcaagaac ttggaatttc tggtttgaat gaaccgacag      4020
     aactgtgcat tgacaatcag gctgccatac atatgttgaa gaacacctat gaaggaaaaa      4080
     taacaagagg caagaaacat attgacattc cacgaaagtt tattcaacaa catattggaa      4140
     cgactataaa actgaaacat gtggaaagtt caagtcaact tgctgatata ctgacaaaac      4200
     cactgactca aagtgtttga agaactaaga agaaaaataa ttaaggagga gaa             4253
//
ID   Copia-8_LMi-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-8_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-220
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3088-3088 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 220 BP; 71 A; 21 C; 35 G; 93 T; 0 other;
     tgttgagaat taattatttt tctatgtctt gttatatgtt gtgcaaagtg cttttatata        60
     tgttccatga aataataatg ctgtacatag taattactct ttggttagtt gtctgttgtt       120
     tctttgtaat gcatattgta agtgaaagaa aaagttagtg tgtacttctt taaagaaaaa       180
     taaaatagtt gcttatcttc aaaacaagaa tttatcatca                             220
//
ID   Copia-8_SI-I repbase;    DNA;    INV; 4076 BP.
XX
AC   AEAQ01014066;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_SI_;
KW   Copia-8_SI-LTR; Copia-8_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4076
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01014066; Positions     482    4557.
XX
CC   Positions [1561-2064] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..3270
FT                 /product="Copia-8_SI-I_1p"
FT                 /translation="MEATHLKIEKLRDKDNWHQWRFVIRTLLEEDQDVLDV
FT                 CEGRLVRPDANDQDSASKLKKFEKADKTARKLIVTTVERKPLDLLLNCTTA
FT                 KEMWTKLSSVYDLKSDENLSLVQKQFFELKWDCNESVAHNLSKLEQLATKM
FT                 KSLGGEIPNSMILTRALSVLPQKFNHFHSAWDSKSDTKKTFKNLTMRLMNE
FT                 EVRLQKQENSEETTIALFSKSGSRNTSSKNNKSKQKEQSTKEKGVVCFSCG
FT                 QRGHVKKDCTGCYSCGLKGHIKKNCPKQSKKTGTREEANSAEQDGGTTRQA
FT                 FLGSSDAAVNDFWVIDSGASDHMTRRRDWFSFYEEYEEPLMVRVGNGDGIP
FT                 AYGRGNIEIETLVNGQWISGVIQDVLYVPCLKRNLFSVKVAAKKGVNFSLT
FT                 NHGSRFELTRDKKIIATGSDNGDLYKIDLRVLIPKECNIVSKFSKIDTVKS
FT                 KVDTLQLWHERLCHQDKRHVKTLLKNMGINVLDVDDFCDGCAYGKHHRLSF
FT                 HNRVERATRVREIIHTDVCGPMQQESLGGKRYSLIFKDEFSGFRKIYFLRE
FT                 KSEVFEKLKMFCKELENQFGEIVREIHSDGGKEYINKNVNSFLSSKGIKHS
FT                 VNVPYTPQQNGVAERDNRIIVEAARSMIYAKPDLPLSLWAEAMNTAAYVIN
FT                 RTGPTKQSGRTPYELWFGKTANISNFKIFGTECFVHIPNAKRRKLDKKAEK
FT                 GFVVGYIEDCKGYRVYIPSLKDIVLSRDVLFKKEVVVPNQIEIKSGGEQND
FT                 TYDSGILYDKDLQKNEKEKETQCDCKTKPVQSSSNDNSNVRQLRDRNKIKK
FT                 PELYGSPVSFFTEMLPENYSEAINSNDKCNWEVAMHDEINSLLENETWMLV
FT                 EKPETKKILKSRWVYTVKSNPDGSKRHKARLVIKGCFQTEGIDYKETFSPV
FT                 VRFDTVRTLLSVAAHDGLNLAQFDIKTAFLYGSLKEDIYMYQPEGFNNGTA
FT                 RVCKLLKSLYGLKQAPRCWIEHFTGFLEFFGFSRSIADPCFYIYKSEIDKM
FT                 LLAVYVDDGLLAATNKLLIERFFLELRKHFKITETNNVTSFLGVEIVKLPD
FT                 GSTLLTKENLLEKC"
XX
SQ   Sequence 4076 BP; 1403 A; 592 C; 937 G; 1144 T; 0 other;
     ggttatgggc ccagtaccac gctattgaga agtgaacaaa aaagtattga gtgaaaaatg        60
     gaagcgacgc acttgaaaat tgagaagctt cgtgacaagg ataactggca tcaatggcgg       120
     tttgtgattc gtactctttt agaggaagat caagatgttc tggatgtctg tgagggcagg       180
     ctcgttcgcc ctgacgccaa tgatcaagat tcagcaagca agctgaagaa attcgagaag       240
     gcagacaaaa ccgctcgaaa attgattgtc acgacagtcg agaggaagcc gttggatttg       300
     ctgttgaact gcactacagc aaaggaaatg tggacgaagt tatcttcggt atatgattta       360
     aaatcagatg aaaatttgtc gcttgttcaa aaacaatttt ttgagttaaa gtgggactgc       420
     aatgaaagcg ttgcgcataa tttatcgaag cttgagcagt tggcaacgaa aatgaagagc       480
     ctcggtggtg aaattccaaa ctcgatgatt ttgacacgtg cgctttcggt tcttccacag       540
     aagtttaatc actttcatag tgcgtgggat tccaaaagtg atacgaagaa gacctttaaa       600
     aatttgacga tgcgattaat gaacgaggag gttcggctgc aaaagcaaga aaattccgag       660
     gagacgacga ttgctttatt ctcaaagtca ggatcgcgaa acacgtcctc gaagaacaac       720
     aagtcgaaac aaaaggaaca atcgacaaaa gaaaaaggtg ttgtgtgttt ttcatgcgga       780
     cagcgaggcc atgtaaaaaa ggattgtacg ggctgttatt cttgtggatt aaaggggcat       840
     ataaagaaaa attgtccaaa acaaagcaag aagacaggga cgcgagagga agcaaattct       900
     gcggaacaag atggcggaac gaccaggcag gcgtttctcg gaagtagtga cgctgctgta       960
     aacgatttct gggtaatcga ctcgggcgca tcagatcaca tgacaagacg acgtgactgg      1020
     ttcagttttt acgaagaata tgaagaaccg ttgatggtaa gagttggaaa tggagacggg      1080
     attccagcct acgggagagg taacattgaa attgaaactc ttgtgaatgg acaatggatt      1140
     tcgggtgtca ttcaagatgt tttgtatgta ccatgcttaa agcgaaattt attttctgta      1200
     aaagtcgcag ctaaaaaggg cgtaaatttt tctcttacga atcatggttc acgttttgaa      1260
     ttaactcgcg acaaaaagat tatagcgacg ggctcggata acggtgattt gtataaaatc      1320
     gatctgcgtg ttttaatacc gaaagaatgt aatattgtca gtaagtttag caaaattgat      1380
     actgtaaaat caaaagtgga tactttgcag ttatggcatg aaaggctgtg tcatcaggac      1440
     aagagacatg ttaaaacttt gttaaaaaac atgggtatta atgttttaga tgtagatgat      1500
     ttctgtgacg gctgtgctta tggcaagcat cataggttaa gttttcataa tagagttgaa      1560
     cgtgcgacga gagttcgaga gattatacac actgacgtgt gtggtcctat gcaacaggaa      1620
     tcactcggtg gtaaaagata ttcactaatt tttaaagatg aattttcggg ttttagaaaa      1680
     atttattttt tgcgagaaaa gtcagaagtt tttgaaaaac taaagatgtt ttgtaaagaa      1740
     ctcgaaaatc agttcggtga gattgtaagg gaaattcaca gcgatggtgg taaggaatat      1800
     ataaataaaa atgttaacag ttttttaagt agtaaaggta taaaacacag tgtgaatgtt      1860
     ccttatactc cacagcagaa cggcgttgca gaacgggata acagaatcat tgttgaagca      1920
     gcacgatcga tgatatatgc gaagccagat ttacccttat ccttgtgggc ggaggccatg      1980
     aatacagcag catatgtcat taatagaaca ggtccgacta agcaatcggg aagaactcca      2040
     tatgagttat ggtttggtaa gacagctaat ataagtaatt ttaaaatttt tggaacggaa      2100
     tgttttgttc acataccaaa tgcgaaacgt agaaaacttg ataaaaaggc agagaaagga      2160
     tttgtagttg gttacattga ggactgcaag ggctatcgag tatatatacc aagtttaaaa      2220
     gatatagttt tgagtcgtga tgttctgttc aaaaaggaag tggtagttcc taatcaaatc      2280
     gaaataaaga gtgggggaga gcaaaatgac acatacgatt ctgggattct ttatgacaaa      2340
     gatttacaaa agaacgaaaa agaaaaagaa acacaatgtg attgtaaaac aaaacctgtg      2400
     cagtcttcaa gtaatgacaa ctcaaatgta agacaattaa gagacagaaa taaaattaaa      2460
     aaaccagagc tctatggttc tccagtttca ttttttactg aaatgctgcc tgaaaattat      2520
     agcgaagcta taaattctaa tgataagtgt aactgggaag tagctatgca tgacgagata      2580
     aattcgttac tcgaaaatga aacatggatg ctcgtagaaa aaccagaaac gaaaaagatt      2640
     ttaaagagtc gttgggttta tacagttaaa tcgaatcctg atggttcaaa gcgacataaa      2700
     gctcgtttag ttataaaggg ctgttttcag acggaaggaa tagattataa agaaacgttt      2760
     agcccagtag tacgttttga tacagtaaga actttattga gtgtagcggc ccacgacgga      2820
     ttaaatcttg ctcaatttga tattaaaacc gcttttttat acggatcatt aaaggaggat      2880
     atatacatgt atcaacccga gggttttaat aatggtacgg cacgtgtatg caaactatta      2940
     aagagtctat atggactaaa gcaagcacca agatgttgga tagagcattt cacgggtttt      3000
     ctcgaatttt ttggtttttc aaggagcata gcagatccat gtttttacat ttataaaagt      3060
     gaaattgata aaatgttatt ggctgtttat gtagacgatg gtctgttggc tgcaaccaac      3120
     aaactgctca tagagaggtt cttccttgaa ttgcgtaaac attttaaaat aaccgagaca      3180
     aataatgtaa cgagttttct tggagtggaa atcgttaagt tgccagatgg atctacttta      3240
     ttaaccaagg aaaatttgtt agaaaaatgt tagagaaatt taatatgagt aacgctaaca      3300
     tagtttctac tccaattgaa actggttggg acttatccag tccatgtaaa ttagaaaaag      3360
     agattccgta tcgagaagcg gtaggtaact taatgtatct gcaagtaatt agcagaccag      3420
     atattagttt tgcggttaat attgcgtcta gagcgttaga aaatcctagt atagcacact      3480
     ggttacttgt aaaacgtatt atgagatacc taaagggtac tgcggacatt ggattgttgt      3540
     attgtaagac aggtggcttt gaagcatata gcgacgcaga ttttgcaggt gataaagaga      3600
     ctcgaaaatc gacgtctggt attctatgta aaaacgcaaa cgcagcgatt gtttggcaaa      3660
     gtaaacgaca acaatgtatc tctctgtcta ctacggaatc cgaatatgtt agcgctgcct      3720
     cagctgttaa agagataatc tggttaaaaa gcttattgac tgaatgtgga gattgcgata      3780
     acgaggggtt ttgtttattc atagacaaca tgagtgcaat aagattaatt aaaaaccctg      3840
     aattccatca gagaagtaaa catatcgatg taaaatttca ttttatacgc gacatgtatg      3900
     aaaaaggtgt gattaatgta aaacatgtta gtagcgatga gcaaactgca gacattttta      3960
     ctaaggcttt agcaaaaccg agatttataa atttacgttg taaattagga ttaatcacta      4020
     aggaaaatat taataagtcg ttttttttgt aaaatgttga gttttgggga gagtgt          4076
//
ID   Copia-8_SI-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   AEAQ01014066;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_SI_;
KW   Copia-8_SI-I; Copia-8_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-257
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01014066; Positions     225     481.
XX
SQ   Sequence 257 BP; 64 A; 57 C; 61 G; 75 T; 0 other;
     tgaaggaaaa actcctcatt tgtaaactcg cgcctgagcg ccaggctcta cgagcgctgc        60
     ctgacttatg ggcgctgcaa gcgcgctgtc gattgactaa taaaaactaa agccgataga       120
     gggtcttacg accagcgtag atcggggtgt acgctctctc tcgtactgcg tgcgttttca       180
     tatagatgtg tgtagcttgt gttactctaa ataaacttct caagtttttt attgagcagt       240
     tggtcataat cttaaca                                                      257
//
ID   Copia-8_TrVa-I repbase;    DNA;    INV; 5810 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-8_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5810
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 246-246 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           776..5038
FT                 /product="Copia-8_TrVa-I_1p"
FT                 /note="gag, integrase, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MSDKDDVKIPVFSGTGYARWKYRMLLLLEVKECKTVV
FT                 ENEARPADITEEVWLKTDAKARNYIVNSISDSIFDLIVSEPSAKRIISKLD
FT                 NLYLPQSTANQVQVRQNLLKLKLKDHENPTSFFLKFESLSNDIVNSGIVFS
FT                 EQEKLATLLSALPRSYSHLSDIIDSINSDKFEFIKNRIVTNFQMYNDSPST
FT                 GEITEKVSAFHFEGNSRNTRNRTQNSGSQNYWRNGNRKYSQGRNVSSYDRC
FT                 SSNRNRNHHANFNDSDNDNSTHNNSSHNSRRNSTYQSNSNRNFSSNRRNRE
FT                 QSHSPNRYNNQRSHSRNSRQYSKHNKNNYAHKNERKYSCFANLDSKSCSSL
FT                 SISENEIDLDPSVKCTNYSRTHESFDNIDWIIDSGCSDHIINSDKYFVKYE
FT                 VLKNPLNINLGDGSPLVTKIKGDISAVYTVNGKDTEITVRNVYYVPEMKNN
FT                 LLSVSRCTDKGNTFEITEKEIRIFSIDNIHYGSALRIGNLYKLASKLYHGN
FT                 NQIVANKVNQTSQMAKPLLKEEWHRKTGHMSFPNLDKLIKNNLALGLPNEV
FT                 EKDIIQCEICLENKMANLPYKNNRWSAKKAGYIIHTDVCGKFKQQGYKGEN
FT                 YFTTFVDDYSKFSLVYPIKFKSEVFECFQEAKHFFENHTGNKLRELRCDNG
FT                 KEYLNSDFYEDAKANGFLIKPCPRYAHQLNGTAERLNRTLLDRTRCLLGES
FT                 NLPTIYWPLVLQTANFLKNRTLVNQIENITPYEIIFERRPDLSYLKIYGSE
FT                 AFVRVPEQIRKGKFSPKAEKGKLVGYEDNCYVFLISNKVIKSRDAKFIDQN
FT                 EHCIKLKGNSDSTDNLNQQKYVTFSVDDSDSESSSDSEEASHENVSENLNS
FT                 DRQIEISAGPSLCKTPVTIESQNNGESKPKTKGRVLRPRENIKQPRRLTDH
FT                 VLFLNYADINVPETYEEAINSKNATQWKNAIAEELKSHEQNKTWRLVKRPE
FT                 NAEIIDVKWLFRIKSDNQLKARLVAKGFQQSYKENEIIYSPVAKSSSLKLL
FT                 LSLSAVEDYHVHQMDVITAFLNGKIHEDVYIEHPPGLKVPKNQVCKLEKAL
FT                 YGLRSSPRDWYDCFDEYIKSLGFKRSIHDCCLYFKDLKTNPIFILLYVDDI
FT                 LLISAKLNKICNLKESLKDRFQMKDLGEVKKYLGIEIKRDRKEKVIALNQS
FT                 EYIYSVAEKFNVLDSKGFKTPMEQNLKLYPAEQTSNQTTYRSLIGALLYIA
FT                 MNTRPDIAHSVNYLSRFQNSCNDTHHKYALRVLKYLLETIDLNLIFYGKID
FT                 KNQILSCCVDADWAGDPVDRKSTTGFLIKLYGNPIMWKSRKQPCVTKSSTE
FT                 AEYVALSNATSEIKFLKSLLRELNVNIKEPIPVYEDNLAAVIIASQGNFSK
FT                 NSKHIEVHNHFVHENVSNGLIKVIKIFSDENVADVLTKSLGKIKFSTFCKC
FT                 LNLAPFV"
XX
SQ   Sequence 5810 BP; 2071 A; 999 C; 968 G; 1772 T; 0 other;
     tggtaccaga gctgtggtta ataatagtag tttcgtgatc gtgaactttc atccgtgatt        60
     aagcataccg gtcgacagac gaacatgtgt taaggcctaa atggtaagat tcagcacatt       120
     tgtagtcttc actcatttga aataatcatg aatcgaaaca tctcatgatt ctcaaagttt       180
     aagtacttct ctactcgggt tgaccacttc catgccataa agtgaggaag cagctaaaac       240
     gagtttgatt gattctctcc tgttctttgt tctttgttcg taacaaaaaa atcatgtggt       300
     gaaagcaact taaccctggt tgatgatttc tatacaaaag caagattttt ccaaacaaga       360
     atgtgtggat tgaagcctaa agaagtgtaa tcaaaagaag ccaaatggat attgtctcat       420
     ttcctcttcc ctatcaatga agctgtgacc aacaaacaag tgcctagtat catttcattc       480
     tcttctctac ctgcgcctca ggaaaccaat catgtaactt gcaaaatgtc tttgtctttc       540
     tcctgtcagc tgatgtgacc atcgcacctg aacataccta cgcatatctc taagtacata       600
     catactcgat caagaacctc cgatctctac tcaacttcca gtcttttcta accaagtgac       660
     caaatcatgt gagtcatcat tgtacatttt caatggattt catcttattt caacttcgtt       720
     ttacttatta gtgtcctaaa ttcaaggttt caggctcact acattaatcg taacgatgag       780
     cgacaaagat gatgtgaaaa ttccagtgtt ttccggtaca ggttatgcaa gatggaaata       840
     caggatgctg ttacttttag aagtgaaaga atgtaaaaca gtcgtggaaa atgaagcaag       900
     acctgcagat attactgaag aagtctggct caagaccgac gcaaaggctc ggaattacat       960
     tgtcaacagc atatcggaca gtatttttga tctcatcgta agtgaaccta gtgctaagcg      1020
     catcatttct aaacttgata atttgtattt acctcagtct actgctaatc aggtacaagt      1080
     gagacaaaat ctattgaaac ttaaattaaa agatcatgaa aaccccacct ctttttttct      1140
     aaaatttgaa agtttgtcaa atgatatagt aaattcaggc atagtattct ctgaacaaga      1200
     aaaattagct acattactaa gtgctttacc aagaagttac tcgcatctaa gcgacataat      1260
     tgactcaata aattctgata agttcgaatt cattaaaaac cgaattgtta ctaattttca      1320
     aatgtataat gatagcccat caacaggtga aatcactgaa aaagtgagtg catttcactt      1380
     tgagggaaat tctcgaaata ctcgaaatag aacccaaaat tctggttctc aaaactattg      1440
     gagaaatgga aatcgaaaat attctcaagg tagaaacgtc tcttcttatg ataggtgttc      1500
     atcaaatcgt aatcgtaatc accatgctaa ctttaatgat tcggataacg ataattcaac      1560
     tcataataat agtagtcaca acagtcgacg taatagcact taccaaagta actctaaccg      1620
     taatttctct tcaaataggc gaaacagaga acaaagtcat tcaccaaata ggtacaataa      1680
     tcaacgctct catagtagaa atagtaggca gtattctaag cacaataaga ataattacgc      1740
     ccataaaaat gagcgaaaat attcttgttt tgctaattta gatagtaaat cttgttctag      1800
     tcttagtatt tctgaaaacg aaattgatct cgatccaagt gttaaatgta ccaactattc      1860
     tcgtactcat gaaagttttg ataatattga ttggataatt gatagtggat gttcagacca      1920
     cataatcaac tccgacaaat attttgttaa gtatgaagtt ctgaagaacc ctctcaacat      1980
     aaaccttgga gatggttcgc ctcttgtaac aaaaatcaaa ggtgatattt ctgctgtcta      2040
     taccgtaaat ggaaaagaca cagaaatcac agtacgtaat gtttactatg tgcctgagat      2100
     gaaaaacaac ctgctaagtg tatcacgttg caccgataaa ggcaatacat ttgaaattac      2160
     tgaaaaagag attcgaatct ttagtatcga taatatacat tatggttctg ctctaaggat      2220
     aggaaacttg tacaaactag cttcaaaatt gtatcatggt aacaatcaaa ttgtagcaaa      2280
     taaagttaac caaacatctc aaatggcaaa acccctctta aaggaagaat ggcataggaa      2340
     aactggccat atgagtttcc ccaacctaga taaattaatt aaaaacaatc tagccttagg      2400
     actgccaaat gaagtagaaa aagatattat ccagtgtgaa atatgcctgg aaaataaaat      2460
     ggcaaatcta ccgtataaaa acaatcggtg gtctgcgaaa aaggcaggct acattattca      2520
     tactgatgtt tgtggtaagt ttaaacaaca aggctacaaa ggagaaaatt actttactac      2580
     ttttgtagat gattactcta aattttcctt agtctatccg atcaaattta aaagcgaagt      2640
     ttttgaatgc tttcaagaag cgaaacattt ctttgaaaac catacaggca ataagcttag      2700
     agaacttaga tgtgataatg ggaaagaata tctaaatagc gatttttatg aagatgctaa      2760
     agctaatgga tttctaatta agccctgtcc taggtacgca caccagctta acggtacagc      2820
     tgaaaggctt aaccgaactt tattagatag aaccagatgt cttctaggtg agtcaaattt      2880
     accaacaatt tactggcccc ttgttcttca aactgctaat tttcttaaaa atagaactct      2940
     tgtaaaccag atagaaaaca taactcctta tgagataatc tttgaaagac gcccagactt      3000
     gtcctatctt aaaatttatg gaagcgaagc cttcgttcga gtccctgaac aaatcagaaa      3060
     aggcaaattt tctccaaaag ccgaaaaagg caaactagta ggttacgaag acaactgtta      3120
     tgtattttta atctcaaata aggtaataaa atcccgagat gcaaagttca ttgatcaaaa      3180
     cgaacactgt attaaactga aaggtaactc agatagtaca gacaacctta accagcaaaa      3240
     atatgtcact tttagtgtag atgactcaga ctctgagtcc agttctgata gtgaagaagc      3300
     aagtcatgaa aatgtaagtg aaaacctaaa ttcagatcgt caaattgaaa tcagtgcagg      3360
     tccctcactc tgtaaaacac ctgtaacaat tgaatcccaa aataacggtg aatcaaaacc      3420
     taaaactaaa ggtagggtat taaggccgag agaaaacatc aaacagcctc gtagactaac      3480
     tgatcatgtt cttttcctaa attatgcaga tataaatgtc cctgaaactt atgaggaagc      3540
     tattaattcg aaaaatgcca ctcaatggaa aaacgccatc gctgaagagt taaagagtca      3600
     tgagcaaaat aaaacttggc gattggttaa aagacctgag aatgcagaaa ttattgacgt      3660
     taaatggctt tttcgaatta agagtgacaa tcaactaaaa gctcgtctgg ttgcaaaagg      3720
     atttcaacaa tcctataagg aaaatgaaat aatttattcc cctgttgcca aatcttcttc      3780
     attaaaactt ttgttatctc tgtcagcagt tgaagattat catgtacacc aaatggacgt      3840
     aattacagct ttcttaaatg gaaaaatcca tgaagatgtc tacattgagc accctcctgg      3900
     tctcaaagtt ccaaagaacc aagtatgtaa attagaaaaa gctttgtatg gcttaagatc      3960
     gtcacccaga gattggtatg actgttttga tgagtatatc aagtcattag gttttaaacg      4020
     atcaattcat gactgttgct tatattttaa agacttaaaa actaatccaa tttttatctt      4080
     attgtatgtt gatgatattt tgttaatttc tgcgaaacta aacaaaatat gtaacctaaa      4140
     agagtcatta aaagacagat ttcaaatgaa agacttaggt gaagtcaaaa aatacttagg      4200
     catagaaatc aaaagagata ggaaagaaaa agttatagct cttaatcaat cagagtatat      4260
     ttactcagtt gcagagaaat ttaatgttct tgattcaaaa ggtttcaaaa ctccaatgga      4320
     gcaaaactta aaactctacc cagcagaaca aacgagcaac caaacaacgt acagaagtct      4380
     aataggagca ctgttatata ttgcaatgaa cactcgccct gacattgcac actcagtcaa      4440
     ctatctttct agatttcaaa attcttgtaa cgatacgcat cacaaatatg ccttacgtgt      4500
     acttaagtac ttattagaaa caattgatct caatcttatt ttttatggaa aaattgataa      4560
     aaatcaaatt ttaagttgtt gtgttgatgc cgactgggct ggcgacccgg ttgacagaaa      4620
     atcaaccaca ggttttttaa tcaaattgta cggtaaccca atcatgtgga aatctcgaaa      4680
     acaaccctgt gttactaagt catcaacgga ggcagagtat gttgctctct ctaatgcaac      4740
     gtcagaaata aaattcttaa aatccttact acgagaatta aatgttaaca ttaaagaacc      4800
     cattcctgtg tatgaagaca acctagcagc agttattata gccagtcaag gcaatttcag      4860
     taaaaactcc aagcacattg aagttcacaa tcatttcgtc cacgaaaatg tctcgaatgg      4920
     tttgattaaa gtaattaaaa ttttctctga cgaaaatgta gctgacgtgt taactaaatc      4980
     cttaggaaag attaaattct ccacattttg taaatgtttg aatctcgctc catttgttta      5040
     aattcatgtg tttgtttttc caaaaagtta tcgttttgta aaaccaagga ggcgtcgatg      5100
     gaatgtcgcg gttagtttta aaaattaggt ttaagaattt cattttaagt gaaaaagttt      5160
     gaatgaatcg tgatatgaaa caaattgtta gaattttaaa ttagaaaagt ttttgaaact      5220
     gttgattgta aacttcaaga aaaagttcct atgtttgaaa gtcaaattat tctataagaa      5280
     tagatacata taagtcatga taaaatagtc aagaaactcc attatgtttt aaattgtttt      5340
     tatgttaaac gctcgcttct aaatcttctc ttgttattat atagtgcagt ttgaaacttg      5400
     ctctcagaca acctgtccaa ttgtctggta gtaattttcc atttgtacta ggtaacaaat      5460
     ttgtgatctg gacaatcaca tgtttgtgac caatctttaa accttcataa tttaagcgca      5520
     gcaaagaacg tattactgtg tgttttttta actgaattgt tttttttatt ccaattttat      5580
     tctaaatttg ttatgtcatg agatctcaag taaaattgtc tttacaaaga taaatgctag      5640
     gtaggttatt atgatcctcc agcggaaaga aagttaaacg ttaaattgtt taagtatgtt      5700
     tttcaaatta aatgtgatga atttgtttta gtgaatattt tacgatagtc ataagctcaa      5760
     gtcaaataag tattataatt ttatataagc gctcccaaat taaggaggcg                 5810
//
ID   Copia-8_TrVa-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-8_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-249
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 229-229 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 249 BP; 73 A; 49 C; 39 G; 88 T; 0 other;
     tgttgagagt cataatttgt cctcgcattg tgaggaaaga cggcaacgcc gcactgctgt        60
     gtaacagctg agctaaccta tcttatgtaa cattctagat cgtgttcacg tcaaagttgg       120
     acatcctcgt ccttctcatt ttatatcgtt ttataattat tattttaaat cacatgtttt       180
     taacagaata aaaggattat tgtatataac tacaaacgtc agttatccct cttattgatc       240
     cacttaaca                                                               249
//
ID   Copia-95_AA-I repbase;    DNA;    INV; 3451 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-95_AA_;
KW   Copia-95_AA-LTR; Ty1_copia_Ele173; Copia-95_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3451
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [916-1419] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..2094
FT                 /product="Copia-95_AA-I_1p"
FT                 /translation="MGKKVVFVNDSVLFLNFGEVIARGTVVDGLYCMDFSH
FT                 DSIVDPSALIGTKQVSMEKLHERLGHLSFSGIERLLKNDMVEGINRSLSGE
FT                 DTQKVCESCLAGKQSSKRFEHRELPRSSRPLEIIHSDVCGPMEVKTYNGYR
FT                 YFVTFTDDYTHFTLAYLMARKREVIEKFQEFEALVEGHFGRSISKLRCDNG
FT                 GEYIGNEFKDFCKENGIQMIFTVPYTPQQNGVSERINRTLMEKVRAMLHGS
FT                 GMPKEMWGEALHCAAYITNRCPTNGLVENKTPFEMFFDKRPNLENLRIFGC
FT                 TAYAQIPKEKRQKLDSKTKRLVFVGYANNGYRLWNKETRSIESSRNVIFDE
FT                 ERLYEDQSDRLSNGDDLVSPEDLETVQLIPVSRCKEDESVEKNAAMEETIH
FT                 EQSNVSEENTLTEVSLESDYESTFEEQNSEDEPEMQQVRRSERERKVPARY
FT                 TDYKMAKIASSFSEVNPIPQTIEELKQRDDWEQWETALDSEMGSLKENQTW
FT                 TIADGDVPKE"
FT   CDS           2226..3452
FT                 /product="Copia-95_AA-I_2p"
FT                 /translation="MESVRTILSMANEMKLLIHQMDVKTAFLNGKLDEVIY
FT                 MQLPKDEVGKGQTVLLQKSLYGLKQASRSWNKRFDAAITNLGFTQLKCDSC
FT                 VYKNKQKGLILILYVDDLLIVGANLDEIDWIKSELGKLFHMKDLSEVKHFL
FT                 GMDITRDMKTQTLKIAQSGYTARILRRFGMFDCKPVGTPLEANNKWTKNEG
FT                 NETQHPYKELLGCLQYLAITTRPDICAAVSALSKYQSRPSDAHWSGLKRIL
FT                 RYLRGTMDTCIVYQHQNNANVLIGYADADFANDEDNRKSISGYAFQVYGNL
FT                 VAWATKKQQTVSLSSCEAELIALSCAVKEGLWLTNLLKELDVDSIPLIIME
FT                 DNIPCIRYAEEPRSHQRMKHLDIKYMFIRDLIKKRELKLKLLASKEQPADA
FT                 FTKGLPKSQQLRGSV"
XX
SQ   Sequence 3451 BP; 1102 A; 640 C; 889 G; 819 T; 1 other;
     aattcgacaa cgtcaagggc gctctgacgg tattgtcgaa tgaggaactc tgtcgtaaac        60
     ccatttatga catcaagcgg atgttgctgg acgcagagct tgccagtgga gcggtacaag       120
     gaccgtcggg ggcatcaagc agtattgcgc tgaaaacgga gaagaagaac gaaatcgaat       180
     gtttcgggtg cggtggagtc ggccattata agaaccgttg cccgaagaag aagaagccaa       240
     ccaagaagag gaccggcggc cacgccctga tggccggcag aaggatcgag agagcgagag       300
     cgaaaagagc agcgaatgtg cgattcgtcg tggactccgg ggccaccgag cacatggtca       360
     acgacgaacg gccgctggag aacgtgaagg agctggacga gcccgctgca attagtacag       420
     caaaatccgg ccaggtgctt tgggccacaa agtcgggaaa aatgagattg acttccataa       480
     ttggggtgaa taaaatgaaa ccgattacat tgtataacgt cttatttatt cctggtctgg       540
     attcgaatct cctttcggtt aagaaaggca aatgaaatgg ggaagaaagt cgtttttgta       600
     aacgacagtg tcttattcct gaactttggt gaggttatcg ctagggggac ggtagtagat       660
     ggactttact gcatggattt ctcccacgat tcgattgttg acccatcagc gttgattgga       720
     acgaagcaag taagtatgga gaagcttcat gagcgattgg gtcacttgag cttttcgggg       780
     atagaaaggc tgcttaagaa cgacatggtt gagggaatca accgtagttt gtctggagaa       840
     gatactcaaa aggtttgcga aagctgttta gcggggaagc aaagcagcaa acgatttgag       900
     caccgggaac ttccaagatc aagcaggccg cttgaaatta tacattccga tgtttgcggt       960
     cccatggaag taaaaacgta taatggctac cggtattttg ttacatttac cgatgattat      1020
     acgcacttta ctcttgctta tttgatggca cgaaaaagag aagttatcga gaaatttcaa      1080
     gaattcgaag ctttggttga aggacacttt gggcgaagta tatccaagct acggtgcgat      1140
     aatggtggtg aatacattgg aaatgaattc aaagacttct gtaaagaaaa cggaattcaa      1200
     atgattttca cagtaccata cacaccacaa caaaatggag ttagcgaaag gatcaaccga      1260
     actttgatgg agaaggttcg tgcaatgtta cacggaagcg gaatgccaaa ggaaatgtgg      1320
     ggagaagcat tgcattgtgc tgcttacatc acgaatagat gtcccaccaa tggacttgta      1380
     gaaaacaaaa ctccatttga aatgttcttc gacaaacggc ctaatttgga aaatttgagg      1440
     atctttggct gtacggccta cgctcagatt ccgaaggaaa aacggcaaaa gttagactcg      1500
     aaaaccaaac gccttgtttt tgtgggttac gcaaataacg gatacaggct ttggaacaaa      1560
     gaaacccgat caattgagtc ctcaaggaat gtgatattcg atgaagagcg gctctacgag      1620
     gatcagtctg atcgtttgtc taatggagat gatctggttt ccccagaaga tcttgaaaca      1680
     gttcagctaa ttcctgtatc acgctgcaaa gaggacgaat cagttgagaa gaatgcggcc      1740
     atggaagaga cgattcatga acagtccaat gtcagtgaag agaatacgct tacggaagta      1800
     tcattagaaa gtgactatga aagcactttt gaagagcaaa attcggagga tgaaccggaa      1860
     atgcagcaag tgcggcgaag tgagcgggag agaaaggtac cggctaggta tacggattac      1920
     aaaatggcaa aaatcgcttc atcgttttct gaagtaaatc cgattcctca aaccattgag      1980
     gaactgaagc agcgcgatga ttgggagcag tgggaaactg cactagacag cgaaatgggg      2040
     tcactgaagg aaaaccaaac ctggactatc gcggacggag atgtaccgaa ggagtgaaac      2100
     caattcagtc taaatgggtt ttcaamgtca aagaagatgg acgctataag gcacggttag      2160
     tggccaaggg ctgttcacag cgtcctggat tcgactatag cgaaaccttt tctcctgttg      2220
     cgagaatgga gagcgttaga acgattctat ccatggctaa tgagatgaag ttgttaatcc      2280
     atcaaatgga tgttaagacg gcatttctta acggaaagtt agatgaggtt atctacatgc      2340
     aactaccgaa ggacgaagtt ggaaaaggtc aaactgttct tctgcagaaa agcctgtatg      2400
     gcttaaagca ggctagcaga agttggaaca aacgttttga cgcggcgatt acaaatctcg      2460
     gatttaccca gctgaaatgt gactcctgtg tgtacaaaaa caagcaaaag ggattaattt      2520
     tgattttgta cgtagatgac ctactgattg taggagcaaa tctcgatgaa attgactgga      2580
     taaaatccga acttggaaag ttattccata tgaaggattt atcagaagtc aaacatttcc      2640
     tcggaatgga cataaccaga gatatgaaaa cccaaacgtt aaaaatcgct caatctggct      2700
     acactgcacg gattttgaga cgatttggaa tgtttgattg caaacctgtg gggacaccac      2760
     tagaagcaaa caacaagtgg acgaagaatg aaggaaacga aacacaacac ccatacaaag      2820
     aactattggg ttgcttgcaa tacctagcaa tcactacacg gcccgatatt tgtgctgcgg      2880
     taagcgcatt gagtaaatat cagagccgtc catctgatgc ccattggagc ggtttaaaac      2940
     gcatactacg ttacctacgt gggacaatgg atacatgtat agtgtatcag catcaaaaca      3000
     acgccaatgt gttgattgga tatgccgatg cggattttgc aaatgatgaa gataatcgca      3060
     aatctatatc tggatacgct ttccaggttt atggaaattt ggttgcatgg gcaacaaaga      3120
     agcaacaaac ggtaagtttg tcgtcttgtg aagccgaatt gatagcatta tcatgtgctg      3180
     taaaagaggg tttgtggtta acaaaccttt taaaggaatt agatgtggat agcatcccat      3240
     tgattattat ggaggacaac attccttgca tcagatatgc ggaggaacct aggagccacc      3300
     aaaggatgaa gcacttggac atcaagtata tgttcatccg tgatttaatc aagaagcgcg      3360
     aactgaagct gaagctcctg gcatccaagg agcaacctgc agatgcattc actaaagggt      3420
     tgccgaaaag tcaacaattg aggggaagtg t                                     3451
//
ID   Copia-95_AA-LTR repbase;    DNA;    INV; 1042 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-95_AA_;
KW   Ty1_copia_Ele173; Copia-95_AA-I; Copia-95_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1042
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1042 BP; 291 A; 231 C; 271 G; 248 T; 1 other;
     tgaagatcca atagtaaaca ataacaactc tcgtgaggtt atcacggttg tttatcaatt        60
     ctcttttcac ccgttcccac agatatcaac tgtggtaaaa agctctcgta gaacatttgt       120
     aaaggcctaa tctaatgatt tgaatttgag ctttgccaat gcggctagca gtgtggccag       180
     attgaattat ataataatat catatcattt ctgtatatat cgctaatata ttatgttacc       240
     ttttaacgac ttcggacgaa taaacttcaa tacagtatca gtatccaaac caagtctatc       300
     gttgtgttat catttaactt aacgaacttt aacaggttat aggcccagcg gctagctgtg       360
     gatcaacaga tctggttttg aagaagaaga caatgcctgg tcaaggaagt tctggaagcg       420
     gtagtggaag tggcagcgga agcgggagcg gagcaggtaa catccttgac ggtcagtcaa       480
     gtgatcgtac cggcagggtt actgccgaga gatcctacgc aacgctggga ttcgtccgtg       540
     gacgaccgtt cccacgtctt cgacggaacg gagagccagt tcgcggcgtg gaagtggagg       600
     atcgagcatc atctggccaa gatgaagctc gcccactgcc tgaagcggac gcccgacgag       660
     gaaacgtttg ccaccgctgc accaggcgag acaccggagc aggagaatgc tcggttggag       720
     aaataccgca agcgcgtgga agatgatgtc gacgccatcg acgagatcgt tttggccgtc       780
     agcaacgacg tactgaacaa gmtcgtaggg gttacctacg caaaagaggc catggatatt       840
     ctggtacgta cctatcagaa gtccgggact gcggcattga tgagtatgcg tcaacggctg       900
     ttcatgctca gaaacaggaa cttcgagagc ctggagagac tgtttgacga atacgacctc       960
     atcatacggg agcttgatcg tatgaatgcg aacttaacca gcagcgaaaa agtccacgct      1020
     ctgttgattg cattgccgga ca                                               1042
//
ID   Copia-96_AA-I repbase;    DNA;    INV; 4249 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-96_AA_;
KW   Copia-96_AA-LTR; Ty1_copia_Ele181; Copia-96_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4249
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1571-2104] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1571..4249
FT                 /product="Copia-96_AA-I_1p"
FT                 /translation="MARRPFPKKVRRKSKAVLDLIHSDLCGPMKTATPGGR
FT                 RYFLSLIDDYSRFTTLYILRKKSDTVDVIRDFVRLMKTQFGRPPKIIRSDQ
FT                 GGEYRSAELVKFLKQEGIQQQFTTAYTPQQNGVAERKNRSLVEMARCMIID
FT                 SGLHYRYWAEAVNTANHLQNMLPTKPVQQTPYEIWHGTKPDMSMIQIFGSE
FT                 AYVHIPKEKRTKLQSKATKLTFVGYSQQHKAWRFIDLKTNEIVFSRDARFL
FT                 PSSDREIPDAVDDEIFVVPPVKPSSNMEHEESDESDEDSEDEPDADSDDEE
FT                 EFRGFEEESCDNLDLGFENPADRSLYEDANGSVVSRQDGELVSIQGESTYL
FT                 QEEQFAVTPRRSGRSTKGIPPERYVADGKLARSQQCEPRSYQEAVSDPENG
FT                 HWKAAMNDELKSLRECKAWDLTSLPPGSKTIGCRWIYKKKQDEQGKLVRYK
FT                 ARLVAQGFTQRYGLDYDEVFAPVAKQVTLRTLLTIAGRDEMQVRHVDVKTA
FT                 YLNGDLKETIYMRVPPGLRVEKGQVCRLRKSLYGLKQSARVWNQKLNDVMK
FT                 RLGFRQADADPCLYVRKTSGGTVYILVYVDDMLIATSRDEDYEGVVKALAS
FT                 EFQITTLGEVKHFLGIRVTRKNNAYCLDQKAYIDKLVAQFGLADAKGSRIP
FT                 MDVGYLQQKEELESLPNNEKFQSLVGGLLYLSVNTRPDIAISTSILGRQVS
FT                 KPTNADWTEAKRVLRYLKSTSDLKLELAVNRQELRGYADADWAGNVKDRKS
FT                 NSGYLFQLGGGPISWCARKQSCVALSSTEAEYISLAESCRELLWLKKLLKD
FT                 FGEPVQEPVQIFEDNQSCIKMLEQNAGLKRSKHVDTKYHFVKDLAENDNVN
FT                 VTYCPSADMLADIFTKPLNRVKLEDIRERIGLRSLRDEEE"
XX
SQ   Sequence 4249 BP; 1165 A; 851 C; 1261 G; 969 T; 3 other;
     ataggttatg ggcctgtgaa gtagccattt tgtttttgtg caaagtgaac acgttcagac        60
     aagtcgtggc gcgtttgttg gaatttttcc ggaagtgtta aattcaacaa aaatggagaa       120
     aattggtatc gcgaagttaa cgaacgataa ttacgattcg tggaaattgg aagtcgagtt       180
     tttgttagtg agagaaggac tttggaagta tgtctcgccg ggagtgaagc cggaagtggc       240
     tgcttcgggt tcgaacgtcg cggaactggc tgcctgggac gagggagacc agagagcgcg       300
     cgcgacgatc ggtttattgc tgacaaaaag tcaacacggg catatccgga atacgaattc       360
     cgcgaaagca gtgtgggaca atttggaaaa gcagcaccag aagaagacgc ttacgaccaa       420
     agtgcatttg ctcaagcgaa tctgcgacat ggagtaccac gacggggaca acatcgaaga       480
     acacctgatg gagtttgagg atttgttcga gaagctggct aatgctggaa caaaactaga       540
     cgaagatctc caggtggttt tagtgtttcg aagtttgcct ggttcgttcg atgccttgac       600
     gacgacgcta gagaaccgag ccgatgatga gctaacgatg catcttgtga aagggaagat       660
     catwaacgaa gtgcacaagc gtcgtgatcc gkcggtagtg gattcggttg ttctcaaagc       720
     ggaagacaag aagaaaaact cagtgtgttt tttctgcgag aagcccggtc ataagaaagc       780
     aaactgcagc ttgtggctga ggcagaagaa agaagaaggt gacagtagct cagcagtgag       840
     caggcacagc gaagtgagaa aagtgtcgaa aaagctcgcg aaggcgaagc ttgcgacgtc       900
     gcgatcggaa gaatttactt ttcttgccag agagtgcgtg acgaatggtt gtgtcgtcaa       960
     ttccgatgtg aacgtagaac cgagaaatag tgcgtttgtt gccagtgagt gcgcggcgaa      1020
     agactggatc gtcgattccg gtgcgagttc gcatatgtgc gcaaatcgga agtttttcgt      1080
     gtcgttcaat gaaccgcgga tggacactcc gaaatcggtt acggttgccg acggtaaaca      1140
     tgcagcggtg aaaggcgtcg gattgtgcca gattttttgc atcggaggtg gtggcgcaga      1200
     aacgcgaatt ttgttgagtg aagtgctttt cgttcctgat ctcgacatga atctcgtgtc      1260
     cgttggcagg ctcgttcaga agggagcgag cgtaatcttc gacaagaacg gatgtagaat      1320
     tgcgaacggt gataagattg ctgctattgc gccgtcaagc aagggtctgt tccatcttca      1380
     aatggttgaa cgtgctagtg cagtttcggg tcagtgtcat acgaagaact gcatacacga      1440
     gtggcacagg aagctgggac atcgtgatac tcaagctatc ctggatctgg agcggaaagc      1500
     tttggcaaca ggcatcaagg tacgtmactg ctctgttcgt tattcttgtg aaccctgttt      1560
     ggagggaaag atggcaaggc gaccatttcc taagaaagtg aggcgtaagt cgaaagcggt      1620
     gttggatttg atccacagtg acttgtgtgg gccgatgaaa acggccacac ctggaggtcg      1680
     tcggtatttt ctttcgctga tcgacgacta cagccgcttt accactctat acattcttag      1740
     gaagaagtcg gataccgtgg acgttatccg agatttcgta cgtttgatga aaacgcagtt      1800
     tggtagaccc ccgaagatca tcagatcgga tcaaggagga gagtaccgca gcgcagagtt      1860
     ggtcaagttt ctcaagcagg aaggaattca gcagcagttt acgacagcat acacgccaca      1920
     gcagaacgga gttgcggagc gcaaaaatcg ttcgctggta gagatggcac ggtgtatgat      1980
     catcgattct gggttgcatt atcgttactg ggccgaggcg gttaacacgg ccaaccatct      2040
     gcagaatatg ttgccaacga aaccggtgca gcagacgccc tacgagattt ggcacggtac      2100
     gaagccggac atgagcatga tccagatttt tggttcggaa gcttatgtgc acatcccgaa      2160
     ggaaaagcgg acgaagctgc aatcgaaggc gacaaaattg acgtttgttg ggtactccca      2220
     gcagcataaa gcgtggcgtt tcatcgactt gaagacaaac gaaatcgttt tcagtcgtga      2280
     tgctcgtttc ttgccgtcaa gtgatcgaga gattccggat gcagtcgatg acgaaatttt      2340
     cgtggtgcct ccggtgaaac cgtccagcaa catggagcat gaagagtcgg acgagtccga      2400
     tgaagattcc gaagatgagc cggacgcaga tagtgacgat gaggaagaat tccgtgggtt      2460
     tgaagaagaa tcttgcgaca atttggatct tggttttgaa aatccagcag atcggagttt      2520
     atatgaagat gccaatggca gtgttgtctc tcgacaggac ggcgaactag tttcgatcca      2580
     gggggagtcg acttatttgc aggaggagca attcgccgtt acacctcgtc ggtctggaag      2640
     gtcaacgaaa ggtattccac ctgaacgtta cgtggcggat ggcaaactgg ctcggagtca      2700
     gcagtgtgaa ccccgaagct accaagaggc agtgagtgat cctgagaatg gccattggaa      2760
     ggccgccatg aacgacgagc tgaagtcatt gcgggagtgc aaggcctggg acttgacgtc      2820
     gttgccgcca ggaagcaaga ccatcggatg ccgctggatc tataagaaga agcaggatga      2880
     gcaaggtaaa ctagtacgat ataaagcgag attagtagcg caaggtttca cgcaacgata      2940
     tggcctggac tacgacgagg tattcgcccc agtcgcgaag caagtgacgc ttcgtacact      3000
     gctgaccatc gctggacgag atgagatgca ggtcaggcac gttgacgtga aaactgcata      3060
     tttgaatggc gatctcaagg agaccattta tatgcgggta ccacccggac tacgagttga      3120
     aaaaggacag gtgtgtcgtt tgcgtaagag cctatatggt ttgaagcaat cagccagggt      3180
     ttggaaccaa aagctgaatg atgttatgaa gcgactggga ttccggcagg cggatgctga      3240
     cccgtgctta tatgtgcgga agacgagcgg cggcacagtg tatatcctgg tgtatgtgga      3300
     cgatatgcta atcgccacat cacgtgatga agactacgaa ggagttgtga aggctttggc      3360
     tagcgagttc cagattacaa cacttggtga agtgaagcat tttttgggaa taagagtgac      3420
     gcggaagaac aacgcctact gcttggacca aaaggcttat atcgacaagt tggttgcaca      3480
     gttcggactt gcggatgcta agggatcacg gattcctatg gacgtcggat acctacagca      3540
     aaaggaggag ctggagagtc taccgaacaa tgagaagttc cagagcctcg tcggtggttt      3600
     gctgtatcta tcagtaaata cccggccaga catcgctatt agtacatcca ttcttggaag      3660
     gcaggtaagc aagccaacga atgcggattg gacggaagca aaacgggttc tgcgctacct      3720
     gaagtctacg agtgatttga agttggaatt ggctgtaaac agacaagaac ttcgaggata      3780
     cgcggacgca gactgggccg gaaatgtgaa ggaccgaaaa tcgaattcgg gctacctgtt      3840
     tcaactgggt ggtggcccga tttcatggtg tgccagaaag caatcgtgtg tggcactttc      3900
     atcgacggaa gcggagtaca tttcgttagc tgaaagttgt cgggagctgc tttggctgaa      3960
     aaaactattg aaggacttcg gggagcctgt acaggaacca gtacagatct tcgaagacaa      4020
     ccaaagttgc atcaagatgt tggagcagaa tgcaggactg aagcgttcga agcacgtgga      4080
     caccaaatac cacttcgtga aggatttggc tgaaaacgac aacgtaaatg taacttattg      4140
     cccatcggcg gatatgttgg cggacatttt tacgaaaccg ctgaacaggg taaaattgga      4200
     ggacatacgc gagaggattg gattgcgatc tctgcgcgat gaggaggag                  4249
//
ID   Copia-96_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-96_AA_;
KW   Ty1_copia_Ele181; Copia-96_AA-I; Copia-96_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-172
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 172 BP; 50 A; 38 C; 39 G; 45 T; 0 other;
     tgatggcagc cctgcgccat tcagcatcgc gcgccaatcg agtgtaaaag gagctgactg        60
     aatgaagctc aaaagtgaat ggaaagaagg aaatgaataa agctcattca agtgttttgc       120
     ctcgatctgt aaagacgtgt tttactgttc tctctgctaa tttacccctc ca               172
//
ID   Copia-97_AA-I repbase;    DNA;    INV; 4179 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-97_AA_;
KW   Copia-97_AA-LTR; Ty1_copia_Ele184; Copia-97_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4179
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1465-1992] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..2871
FT                 /product="Copia-97_AA-I_1p"
FT                 /translation="MADAKVSVEKLNDQNYAIWKFKMRLLLTREKLLDVVI
FT                 QPKPPAADATWVSNDEKAQAVIGLALEDAQLIHVMQKSTAKEMWDALKDYH
FT                 ERSSLSSIIHVVRQLITLRMSDNGDMAEHLKQMTALRIRLSALGEDVKDNW
FT                 FVALMLSSLPESYGGLIMALESRPDADLTVDFVKGKLLDEGRRRVENASLS
FT                 EKALATGSWKKKPAEKPTVKKDKVCHYCKKEGHFRRDCRKLMQDRQEKEKS
FT                 QQANIVVKSESGGELCLAAGVTGDAAVWYLDSGATAHMTNNSSILEEVDVA
FT                 KATTICLADGKSIKSAGSGSGRLISVNGRGARMDVKLENVFHVPSLAGNLL
FT                 SVSRIADLGFRVMFDKSECEVLKGEEVVLVGQRKGGLYHLKQLPEQAFLVD
FT                 PKHGELCPHLWHRRFGHRDPQAVMKIVREDLGHGLKMGSCEVQSMCGCCCE
FT                 GKMSRDSFPKASVTRSKVVGELIHVDLGGPMEVATPRGNRFYIALVDDYSR
FT                 YSVVYPLQRKSDAEEKIREYCALLKTQFGRYPKCFRSDNGGEFAGASLMKF
FT                 FSTNGIVVQRTAPYSPQQNGVVERKNRYLVEMMRCMLSEAGLDKRFWAEAI
FT                 CTANYLQNRLPSSAIDRTPYELWSGKKPSYAHLRIFGSEAYVHVPKEKRRK
FT                 LDLKAEKLVFIGYEEGSKAYRFLNLETDRVTISRDAKFLELCTVKEAVRRE
FT                 PFATGGVLEVPLALPPEKVEETAEAPDLETDTESEVDDVNDSRYGSASEGD
FT                 SSVHDFPLDENLRRSKRSTKGKPPSRLIEEIFVAESVSEEFEPGNLREALT
FT                 CGKKKEWAAAMKDELKSHSDNDTWELVNLPPGRKAVGCRWVFKAKKNAAGE
FT                 VTKYEARLVAQGYSQKYGEDFDEVFAPVTRYTTLRALPALASSRKMTLKHF
FT                 DVKTAYLYGKLGEP"
FT   CDS           3051..4151
FT                 /product="Copia-97_AA-I_2p"
FT                 /translation="MVCRLKRSIYGLKQSARCWNRRLDSVLREMGFRPSAA
FT                 DPCLYTKVVNGKWVYLLVYVDDIMVGSEDESQIGAVYKALKKQFEMTDLGE
FT                 VNYFLGLEIGHENGQYSVSLENYIQKVAEKFGLREAKSAKSPMETGYIRME
FT                 DTSPLLSDTTAYRSLVGALLYIAACARPDVAACVAILGRKVSAPTEADWVA
FT                 AKRVVRYLKTTKDWRLKFGSNDGLVGYCDADWAGDVGTRKSTTGFVFHYAG
FT                 GAVSWVSRRQNCVTLSSMESEYVSLSEACQELVWLLSLFKDLGVQQSGPVT
FT                 IREDNQSCIKFVGSERSTRRSKHIETKQHYVKELYEDKVLSLEYCSTDEMV
FT                 ADILTKPLGTIKHRKLAGMLGLSA"
XX
SQ   Sequence 4179 BP; 1075 A; 821 C; 1290 G; 993 T; 0 other;
     ataggttatt ggcccagtaa tcgtggaaag tgcgtgagtt tgtgtcgtcg cgagtgtgaa        60
     ttgtgtggac aatttcctga accgaaaaat cgtgtttggt cgtgtcggaa agacaagatg       120
     gcggacgcga aagtatcggt ggaaaagtta aacgaccaga actacgcgat ctggaagttt       180
     aagatgcggc ttttgttgac acgggagaaa ttgttggatg tggtgattca accgaagcct       240
     ccagctgctg atgcgacctg ggtcagtaac gacgagaagg cgcaggcggt catcgggttg       300
     gcactggaag acgcccaact gatccatgtg atgcagaagt ccacggcgaa ggagatgtgg       360
     gatgctctga aagattacca cgagcgttct tctctttcga gcatcattca cgtcgtgcgt       420
     caattgataa cgttgcggat gtcggataac ggtgatatgg cggaacacct gaagcagatg       480
     acggcgttgc gaattcgctt gtctgcttta ggagaggacg tgaaggacaa ctggttcgtg       540
     gctctgatgc tgtccagtct gccggagtcc tacggtggcc tcatcatggc tctcgaaagt       600
     cgaccagatg cggatctgac tgtcgatttc gtgaagggca agctgctaga cgagggaagg       660
     cgtcgtgttg aaaacgcgtc gttgagtgag aaggcgttgg cgaccggatc ttggaagaag       720
     aagccggctg agaaaccaac agtgaagaaa gacaaagtgt gccattattg taagaaggag       780
     gggcacttcc ggcgcgactg tcggaagctg atgcaggatc gacaggagaa agaaaagtcg       840
     cagcaagcaa acatcgtcgt gaaatcggag tcaggaggag agctttgtct tgctgctggc       900
     gtgactggag acgctgccgt gtggtatctg gattcgggtg ccacagcgca tatgacgaac       960
     aactccagca ttcttgaaga ggtggatgtg gcgaaagcga cgacaatctg tctggctgat      1020
     ggaaagtcga tcaaatcggc cgggtccggc tctgggcggc taatttcagt gaatggaaga      1080
     ggagcccgga tggatgtgaa actggagaac gtgttccatg tgccatcgtt ggcaggaaac      1140
     ttgctgtcag tcagcagaat tgccgacttg gggtttcgag tcatgtttga caaatccgag      1200
     tgcgaagtgc taaaaggaga agaagtagtg ttagtgggtc aaaggaaggg tggtctatat      1260
     catctgaaac aacttccaga acaagcgttc ttagtggatc caaagcacgg cgaactgtgt      1320
     ccgcatttgt ggcaccgtag atttggccac agagatccac aagctgtgat gaaaatagtg      1380
     cgtgaagacc tggggcacgg gttgaagatg ggctcttgtg aagtgcaatc gatgtgtggc      1440
     tgttgctgcg aggggaagat gagcagagat tcttttccga aggcatctgt gacaaggtcg      1500
     aaagtagtag gagagctgat tcacgtcgac ctaggaggtc cgatggaggt agctacacca      1560
     aggggtaatc gcttttacat tgctctggtg gacgactaca gccgttactc cgtcgtctac      1620
     ccgctccaga ggaagtctga tgctgaggag aaaattcgtg agtattgcgc tttgttgaaa      1680
     acccaatttg gtcgataccc gaaatgtttt cgctctgata acggtggtga gttcgcgggt      1740
     gcttcgttga tgaagttttt ctcgacgaat ggcatcgtgg ttcagcgaac ggcaccgtat      1800
     tcgccacagc aaaacggtgt ggtggagcgc aagaacaggt accttgtgga gatgatgcga      1860
     tgcatgctgt ccgaagcggg actcgataag cggttctggg ccgaagcgat ctgcacagca      1920
     aattacctgc agaatcgttt gccatcgtct gcgattgaca ggaccccgta cgagttgtgg      1980
     agcggaaaga agccgtcgta tgcgcatctc aggatatttg gttcggaagc gtatgtccac      2040
     gttccgaagg aaaagcgccg taagcttgac ctgaaggctg agaaactggt gttcatcggg      2100
     tacgaggaag gaagtaaagc ctatcggttc ttgaatctgg agacggatcg tgtgacgatc      2160
     agcagagacg caaagtttct tgagctgtgt accgtcaagg aagctgttcg tcgtgagcct      2220
     tttgcgacag gaggagttct tgaagtccct ttggctttac cgccggagaa agtggaagaa      2280
     actgctgaag cgccggattt ggagaccgac acagaatctg aagttgatga cgttaacgat      2340
     tcccggtatg gtagtgcttc tgaaggcgat tcttctgttc acgattttcc gttggatgaa      2400
     aatttgcgtc gttcgaagcg gtcgacgaaa gggaagccac cgtccaggtt gatcgaagag      2460
     attttcgtgg ctgaaagtgt ttccgaggag ttcgagcccg ggaacttgcg agaagccttg      2520
     acctgtggaa agaaaaagga atgggcagca gcgatgaagg acgaattgaa atcacattcc      2580
     gacaatgata cgtgggagtt ggtgaatttg ccgcccggcc ggaaagcagt tggttgtcgt      2640
     tgggtcttca aagcgaagaa gaatgcggct ggtgaagtga ccaagtacga ggcccggctg      2700
     gtagcccaag ggtactccca gaagtacggg gaagattttg atgaagtttt cgctccggtg      2760
     accaggtaca caactcttcg agctcttcca gctttggcga gtagcagaaa aatgacgttg      2820
     aagcacttcg acgtgaaaac cgcctacttg tacggcaaac taggagagcc ataaaactaa      2880
     gtcttgatgg tatgtttgat tgaaaagtac gccgtcacgc caactccgga cctgacactt      2940
     ttttcgcagc tttggtgtag gaacgagcaa ctgattttct tcttgatgac cgtgatgagg      3000
     agttgtttac gaggcaaccg cctggttacg aagtcgttgg gaaagagcac atggtgtgtc      3060
     gattgaagcg tagcatttat ggcctgaagc agtcggccag gtgctggaat cgtcggctgg      3120
     atagtgtttt gcgtgaaatg ggatttcgac cgagtgcagc agacccctgc ttgtatacca      3180
     aagttgtgaa tgggaagtgg gtttatctgc ttgtgtatgt tgatgacatt atggttggaa      3240
     gtgaagatga atcccagatc ggtgcagtgt ataaagcgtt gaagaaacaa tttgaaatga      3300
     ccgatcttgg tgaagtgaac tattttctcg gacttgagat tggacatgaa aatggacaat      3360
     acagtgtatc gttggaaaat tacattcaaa aagtggcgga gaaatttggc ctccgtgaag      3420
     cgaaaagcgc caaatcgcca atggaaaccg gttatattcg gatggaggat acaagtccgt      3480
     tgctatcgga cacaacagcc tacaggagtt tggttggcgc gctgctatac atagctgcgt      3540
     gtgctagacc agatgtagcg gcatgtgttg cgatacttgg ccggaaggta agtgctccaa      3600
     cagaagcgga ctgggtggcg gcgaagaggg tagttcgcta ccttaagact acgaaggact      3660
     ggagattgaa attcggtagc aatgacggtc tggttggcta ctgcgatgcc gattgggctg      3720
     gagatgttgg aacccgaaaa tcaacgacag gattcgtatt ccactatgcg ggtggagcgg      3780
     tttcgtgggt gagccgtaga caaaattgtg tgacgctatc atccatggaa tccgaatacg      3840
     tgtcgttaag cgaggcatgt caagagctgg tgtggttgct gtctctgttc aaggatcttg      3900
     gtgtgcaaca aagtggtcca gtcactattc gagaggataa ccaaagttgc ataaagtttg      3960
     ttggttcgga gaggtctacc cgtcgttcaa aacacattga gaccaagcag cactacgtga      4020
     aggagttgta cgaggacaaa gtgttaagct tggaatactg ttcgaccgac gagatggtgg      4080
     cagatatatt gacaaaacca ctgggcacca tcaagcaccg gaagttggca ggaatgctgg      4140
     gtctatccgc ttaaggtgga ctcgttcgtt gaggaggag                             4179
//
ID   Copia-97_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-97_AA_;
KW   Ty1_copia_Ele184; Copia-97_AA-I; Copia-97_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-220
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 220 BP; 55 A; 47 C; 39 G; 79 T; 0 other;
     tgttagagga gcaacgacct cgtaatataa acattttgtg ccagcctaat cattcgtgtg        60
     aattgtacca gtctaatgtt tcctctgctg gctatgcaat gcgcgccatt ttctatctga       120
     aaagtgaact cgttgtgtgc gcatcgttgt tttaataaat cgttatttaa ttcgttattc       180
     agtataactc agacttttat tccactgctg cctaatccca                             220
//
ID   Copia-98_AA-I repbase;    DNA;    INV; 3283 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-98_AA_;
KW   Copia-98_AA-LTR; Ty1_copia_Ele66; Copia-98_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3283
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   'ATCTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           349..3246
FT                 /product="Copia-98_AA-I_1p"
FT                 /translation="MSEKKFLFARLGNQNYQTWKLRMEMLLKREDLWSVVA
FT                 DVKPEPVTAVWTRSDQKCHATVVLYLEDSQLCLIKDAESAKDVWNKLKTYH
FT                 EKATMTSRVSLLKKICSLNLCESGDVEKHLIELEELFDRLACAGQALEDPL
FT                 KIAMMLRSLPDSYSGLVTALESRPEADLTMPFVKQRLFDEYQRRAERSVDT
FT                 GEKVMKMQSKGQKKRLCYHCQKPGHFRKDCRLLLQQQQQQSKKSEEVPKSG
FT                 KQEKKKKSDAKQVAESDSQLCFTVANVRHRSCWYIDSGCSSHMSNDRSFFV
FT                 KLDASVRTEVVLADGSTTKADGIGEGFVDCVNSEGNVKKILFKDVLYIPKL
FT                 DSALLSVRRLTQRGCKVNFSGSNCDIMSASGEKVALGELYGNLFVLKTVEY
FT                 VKLSKEIRHLPNCQHTWHRRFGHRDPAAVERIQTEQLGVGLQLKDCGLRQV
FT                 IEQEPLSYEEAVRGPEQDLWKAAMREEYDSLMKNNTWSLVELPNGRKPVGC
FT                 KWVYKRKEDVCGNVSKFKARLVAQGFSQQAGVDYDAVFAPVATQPTFRILL
FT                 TVAGYKRMTVRHLDVKSAYLHGQLQEEIYMQQPKGFTVRGKEHLVCRLHRC
FT                 LYGLKQGAKVWNDTISAILGELGFEQGRSDACLFTKKLESGELVYVLIYVD
FT                 DMIVASVSEAEVDKVEKLLKKRISLSSLGEVSHFLGIRVTKDKDGFYALDQ
FT                 QTYVAKVASRFKLDKAKGSKVPMDVGYYRSREGSKLLSSNSDYRSLVGALL
FT                 YVAVNTRPDVAACVSILSRKISEPSEEDWTELKRVVRYLLLTSDYKLRLSV
FT                 NRQERMVLLGYCDADWGGDPTDRKSVTGYVFQLNQSSICWASRKQTAISLS
FT                 SMEAEYVALSEACKELVWLRRLLEEIGVKQNGPTTVYEDNTSCIEFVGVDR
FT                 QSRRSKHIDTRIFYARNLCEQGVVSVQYCSSESMMADVLTKPLGAAKQRRF
FT                 AEMLGLVNSGQ"
XX
SQ   Sequence 3283 BP; 871 A; 654 C; 961 G; 797 T; 0 other;
     ggttatcggc ccaggaatcc gtcgaaaagt ggtgaagtga ttttcttccg gacattgcgt        60
     tccagcgtgg attggtggcg tccattttgt ttggctgttc ggctgctcag atcaacgcgt       120
     tcctttgtgg tggtgcgatc cgttattcgc cgcgtgtgtt gagaacagta gtgctgttgt       180
     gtttggcagt gttcgcttcg gcgcttgtgc tgactggttc gtgttcgttt tcggtgcgaa       240
     agcttctttc gatgctgctc gatcgattgg tgcgtgcgaa caattgagtc ggtggaaaat       300
     actttcgatg cggttgaaag ttattgtgcg cgagtgaata ggaagaaaat gtccgagaaa       360
     aagtttctgt tcgcacgtct gggtaatcaa aattaccaga catggaagct gcgtatggaa       420
     atgcttctaa aacgggaaga cctctggtct gtggtggctg acgtaaagcc tgagcccgta       480
     accgcagttt ggacaaggtc agaccaaaag tgccatgcaa cagttgtgct ttatctcgaa       540
     gacagtcagt tgtgtttgat taaagatgcc gagtcggcga aagacgtgtg gaataagttg       600
     aaaacatacc acgaaaaagc tacaatgaca tctcgcgtct cgttgttgaa gaagatatgt       660
     agcctaaact tgtgtgaaag tggtgatgtt gaaaaacatt tgattgagct ggaggagtta       720
     ttcgaccgac tcgcgtgtgc cggacaagct ctggaagacc cgttaaaaat cgcgatgatg       780
     ctcagaagcc tcccggattc gtatagcggc ctagtgacgg cgcttgaaag ccggccggag       840
     gctgatttga caatgccgtt tgtcaaacaa cgactgttcg atgaatacca acgaagagcg       900
     gaacgaagtg ttgatacggg tgaaaaagtg atgaaaatgc aatccaaagg gcagaagaag       960
     aggttatgtt accactgcca gaagcccgga catttccgga aggattgccg gttgttgctg      1020
     cagcagcagc agcagcagtc aaagaaaagt gaagaagttc cgaaaagtgg caagcaggaa      1080
     aagaagaaga aaagcgatgc gaagcaggtt gcagaaagtg attctcagtt gtgtttcacg      1140
     gttgcgaatg tccggcatcg gagctgctgg tatatcgaca gcggctgctc tagccacatg      1200
     tcgaatgatc gctcgttctt cgtgaaactg gatgcaagcg tcagaacgga agtggttctg      1260
     gccgatggtt ccacgacgaa ggccgatggc atcggtgaag gatttgtgga ctgtgtgaat      1320
     agtgaaggaa atgtgaagaa gatcctgttc aaggatgtat tatacattcc aaaactggac      1380
     agcgctttgt tgtcagtgcg aaggctgaca caaagaggct gcaaagtgaa cttttctgga      1440
     tctaactgtg acataatgag tgcaagtggt gaaaaagtgg ctcttggcga gttgtacgga      1500
     aatctgtttg ttttgaaaac ggtggagtac gtgaagctga gcaaagagat tcgacacctg      1560
     ccgaactgcc aacacacgtg gcatcggcgg tttggccacc gtgacccggc ggccgtggag      1620
     cggattcaaa cggagcagct cggcgttgga ttacagttga aggactgtgg tttgagacaa      1680
     gtgattgaac aggagccgct tagttacgaa gaagctgttc gtggaccaga gcaagatctg      1740
     tggaaagcgg cgatgagaga ggagtatgat tcgcttatga agaacaacac ctggagtctc      1800
     gtcgagttac ccaacggccg taagcccgtc ggctgtaaat gggtttacaa acgaaaggag      1860
     gacgtctgtg gcaacgtgtc gaagttcaaa gcgcgccttg tcgctcaggg cttctctcag      1920
     caagctggcg tggattatga cgccgtgttt gcgccggttg ctacccaacc gaccttcagg      1980
     attctgttaa cagtggcggg ttataagcga atgactgtac ggcacctaga cgtcaagagt      2040
     gcttacctgc acggacaact acaagaagaa atatacatgc agcagccgaa aggctttacg      2100
     gttcgtggca aggagcacct cgtctgcagg cttcatcgat gtttgtatgg cttgaagcaa      2160
     ggagccaaag tctggaatga cacaatcagt gcaatactag gagaactagg tttcgagcaa      2220
     ggtagatcgg atgcgtgttt gtttaccaag aagctagaga gtggtgagct ggtgtacgtc      2280
     ttgatctacg tcgacgacat gattgttgcg agtgtctcgg aagcggaagt cgacaaagtt      2340
     gagaaactgt tgaagaaaag aattagtttg tcgtctctcg gagaagtctc tcatttcctt      2400
     gggattcgtg ttacaaaaga caaggatggt ttctacgctt tggatcagca aacctacgtt      2460
     gcgaaagttg caagccgttt caaactggat aaagctaaag gatcgaaagt gccgatggac      2520
     gtcggctact accggagtcg tgaaggaagc aaactgctct caagcaacag tgactatcga      2580
     agtttggttg gtgcattgtt atacgtggcg gttaatacgc ggccggacgt ggcagcgtgt      2640
     gtttcgattt tgagccggaa aataagtgaa ccgtcggaag aagattggac ggaactaaag      2700
     cgagtcgtcc gttatctact cctaaccagt gattacaagt tgagactatc agtgaataga      2760
     caagaacgga tggtgctact tggctattgc gacgcagact ggggtggtga cccaaccgac      2820
     cgaaagtccg ttaccggata cgtatttcag ctgaaccaat cgtcaatttg ttgggccagt      2880
     cgtaagcaga ccgcaatatc cctttcaagc atggaggccg aatatgtggc cctctccgag      2940
     gcatgcaagg aacttgtttg gctccgcaga ctgttggaag aaattggagt taagcagaat      3000
     gggccaacta cggtctatga agataacacc agttgcatcg aattcgttgg agtagatcgt      3060
     caatccaggc ggtccaaaca tattgacacg aggattttct acgccagaaa cctctgtgag      3120
     caaggcgttg tttcggtgca gtattgttcg tctgagtcta tgatggctga tgtgttgaca      3180
     aagcccctcg gtgcagcgaa gcagcgacgg tttgccgaga tgctgggcct ggttaacagt      3240
     ggtcaatgag ttgcagatca acattgcaaa tatcgaggag gag                        3283
//
ID   Copia-98_AA-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-98_AA_;
KW   Ty1_copia_Ele66; Copia-98_AA-I; Copia-98_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-295
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 295 BP; 70 A; 73 C; 64 G; 86 T; 2 other;
     tgttgagtgt catgtacctg gcgatatttc ctccatcgac cgttctgtcc ttccccccat        60
     gcgaagtgtg acagcgacgg tgtgacagag atagaagagc gagtaaagag aagaaacaat       120
     ttttcatttc ccatttccac atgtaacctt actgaaataa agacgcgktt atacaatcag       180
     tkttactttt cgatcggtgc gcgtattccg aagtttcttt ccgccggtta tcatcggtta       240
     agtgtgtcgg aattccctgc agaacctgtc cactcgtacc gggttctgtc ccaca            295
//
ID   Copia-99_AA-I repbase;    DNA;    INV; 4159 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-99_AA_;
KW   Copia-99_AA-LTR; Ty1_copia_Ele2; Copia-99_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4159
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1566-2063] - Integrase core
CC   'GAGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..2876
FT                 /product="Copia-99_AA-I_2p"
FT                 /translation="MADPGKFAISKLGNTNYASWKFQMEMFLIREDLWHVV
FT                 ADAKPEPVTDAWNKADRKARATLGLCIDESQYVLIKDSVSAKAVWDALKAY
FT                 HEKSTASSQLSLLNRLCDAKLSENGDVEKHLLELDSLFERLVNAGLELAEK
FT                 LKIAMVLRSMPESYHFLASALEARPDADVTMQLVRSKLMDEYHKRQERSGK
FT                 SSSGEQVLKTQKVNKEKLCFFCKKPGHFKNDCRKWQSVKEKNSGEGLSGVK
FT                 PGGSGQQPAKAKQVKNPEINSVCFSAHTEGEAICAAAKVDRLWTIDSGASC
FT                 HMTSSEGFFNELEKSSVTVVMANGNCSESGGIGCGSLKSVNGTGEPVDINL
FT                 DKVLFVPNLDGGLLSVSKMADKGYSVLFTKNSVEVRNASDTVVALGERRGG
FT                 LYFLKEPERVAVANIQCHTVNCQHTWHRRFGHRDPAVFEKIQKEDLATGMK
FT                 LVNCGTKIVCEPCMEGKMARLPYPQQAERKSTQPLQLIHTDLCGPMSNVTP
FT                 GGKRYFLTLIDDFSRYVIMYLLTDKSEAKHCIMSFVRMVENKFGRKPQIIR
FT                 SDRGGEFVNRELEQFYREEGIQMQLTAGYAPQQNGVAERRNRYLQEMAVCM
FT                 LLDANLDKKYWGEAIATAAYIQNRLPSRSVAKTPMELWCGEKPDLSRLKVF
FT                 GCEAFVYIPDAKRVKLDSRASKLLFVGYACGSKAYRFLDKQTNKIVISRDA
FT                 RFLELGSQLQEELPAGAKDQKPADAEVVPQRNTDRLVSIESVSAENESIDE
FT                 ESECEGFVEEDSDDDVFYGADAEDPDGDQAEPGRPQRGNAGVLPARYQDFV
FT                 VGVAKMDDPEPKNYREAVNSACSDKWIKAMNDEYKSLLSKGTWSLVELPKG
FT                 RQAIGSKWVFKKKKDSVDRWCATKRGSLPRDLDNGTAVTLVKCLRRFQCRR
FT                 RSGCSWR"
FT   CDS           2723..4141
FT                 /product="Copia-99_AA-I_1p"
FT                 /translation="MGLQEEKGLSGQVVRHKARLVAQGFGQRYGSDFSEVF
FT                 APVSMPSTFRVLLALAGHKKLQVRHIDVKNAYLNGRLSEELYMRQPPGYAV
FT                 PGKEELVCRLHRSLYGLKQAAHVWNATMKKVLLSLGFKQSDSDACLFAKQL
FT                 DNGEWIYLLIYVDDIVVVSGDERQMDLLENQLSKHFEISSLGPISQFLGIK
FT                 VEKSSDGFYSLSQKAFINEIAERHGLDKAKTSKYPLDTGYMKQADSEPLAD
FT                 NVQYHSLVGALLYLATNTRPDIAAAVSILSRSSSRPTQRDWVELKRVVRYL
FT                 IGTGDLVLRLGLKRGDGLTLTGYSDADWAGDTSDRKSTSGFVFMLGGAAIS
FT                 WGSRKQNCVSMSTMEAEYVALSEAAQEAVWLRRLLCELGAEQRQPTKINED
FT                 NRSCIDFVSLDRQNKRSKHIDTRQHHAKDLCSKGVIQLAYCPTDRMMADIF
FT                 TKPLGPQKINQYVADLGLAKVNRDRFVQ"
XX
SQ   Sequence 4159 BP; 1122 A; 825 C; 1242 G; 970 T; 0 other;
     ggttatgtgc ccagagagga atcgtggaat tcggtcggtt taatagtgaa attcgcggaa        60
     gttcgtccga ttagttttgg cgttgtcgcg tgcatcgaat tcggctggtt gttgcctggt       120
     ggtgatttgc cggtgggcac aaaatggcgg atccgggaaa gtttgcgatc agcaaacttg       180
     gaaacaccaa ctacgctagt tggaagtttc aaatggagat gtttttgatc cgggaggatc       240
     tttggcatgt cgtggcggat gccaaaccgg agccagtaac cgacgcctgg aacaaagctg       300
     accggaaggc ccgtgctaca ctaggactgt gcattgacga aagtcaatat gtgttaatca       360
     aggatagtgt tagtgcaaag gcggtatggg atgctttaaa agcataccat gagaagtcga       420
     cagcatcgtc gcagttgtca cttctaaacc ggctatgtga tgcgaaattg agtgaaaatg       480
     gagacgttga gaagcacttg ttggaattgg attcgctttt cgagcgctta gtgaatgcgg       540
     gattagagtt ggccgagaaa ctgaaaatcg ctatggtgct aaggagcatg ccagaatcgt       600
     accatttctt ggcatctgct ctagaagcac gccccgatgc ggatgttacg atgcagttgg       660
     tgcggtccaa gctcatggac gaatatcaca agcggcagga gcggagcgga aaatcttcat       720
     ccggtgaaca agtgctaaaa acgcagaaag taaacaaaga aaagttgtgt tttttctgca       780
     agaaaccggg acattttaag aacgattgtc ggaagtggca aagtgtaaaa gagaagaaca       840
     gcggcgaagg actatccggt gtgaaacctg gtggcagtgg ccaacaaccg gcgaaggcta       900
     agcaagtgaa aaatccggaa atcaacagtg tttgtttttc tgcccatact gagggtgaag       960
     ccatctgtgc agcggctaaa gtggatcgtt tgtggacgat cgatagtggg gcttcgtgcc      1020
     acatgaccag cagtgaaggg tttttcaatg agctggagaa gtcgagtgtt acggttgtga      1080
     tggcgaatgg aaattgctca gagtctggtg gtattggctg cggttcgttg aaaagtgtta      1140
     acggtaccgg cgaaccggtg gatatcaatc tcgataaagt gttgttcgtg ccaaacctcg      1200
     acggtggatt gttatccgtg agtaaaatgg cagataaggg ttacagtgtg ctctttacga      1260
     agaacagtgt tgaagtgcgt aatgcgtcgg acacggtcgt tgccttgggt gagaggcgcg      1320
     gcggactgta ttttttgaaa gagccggaac gtgttgcggt tgcaaatatc cagtgccata      1380
     cagtgaactg ccagcataca tggcaccgaa gattcggtca ccgtgatccg gcggtgtttg      1440
     agaagattca gaaagaagat ctggctactg gtatgaagct agtgaactgt ggtaccaaga      1500
     ttgtgtgtga gccgtgtatg gagggcaaga tggctcggtt gccatacccg cagcaagctg      1560
     agcggaaatc aacacagccg ttgcagttga tccacacgga tctgtgcggt ccaatgagca      1620
     atgtgacacc cggcggtaag aggtactttc taaccctcat cgatgacttc agcaggtatg      1680
     tcataatgta tttgcttact gataaatctg aagcgaaaca ctgcatcatg agtttcgttc      1740
     ggatggttga gaacaagttt gggaggaagc cgcagatcat acgatctgat cgtggcggcg      1800
     agttcgtcaa ccgtgagctt gaacagtttt atcgggaaga gggcattcag atgcagctga      1860
     cggcaggata cgcgccacaa cagaacggcg tagccgagag gcgcaatcgc tacctgcagg      1920
     agatggcggt atgcatgctt cttgatgcga acttggataa gaagtattgg ggagaagcaa      1980
     tagctactgc agcttacatt cagaatcgtt taccctcacg gtcagtagcg aagacgccga      2040
     tggaactatg gtgtggagag aaacctgatt taagccgcct gaaagtgttt gggtgtgagg      2100
     cattcgtcta cattccggac gcaaaacgag tgaagctaga cagccgagcg agtaagctct      2160
     tgttcgttgg atatgcttgt ggctccaaag cgtatcgttt tttggacaag cagacgaata      2220
     agatcgttat tagtcgggat gccaggttcc ttgaactcgg atcacaactg caggaggagt      2280
     taccagctgg agcgaaggat caaaagcctg cggatgcgga agttgttccg cagaggaaca      2340
     cggatcggct cgtgtctatc gaatcggttt ccgcagagaa tgaaagcatc gacgaagaat      2400
     cggaatgtga aggttttgtg gaggaagatt ccgacgatga tgttttctat ggtgctgatg      2460
     ccgaagaccc cgatggagat caagcggagc caggtagacc tcagcgcgga aatgcaggag      2520
     tgctgccggc aagatatcag gattttgtag tcggtgttgc gaagatggac gatccggaac      2580
     cgaagaacta ccgtgaagct gtgaatagtg cgtgtagtga taagtggata aaagcgatga      2640
     acgatgaata taaatcgctg ttgtcgaagg gtacgtggtc gttagttgaa ctaccgaaag      2700
     ggcgacaagc aatagggtca aaatgggtct tcaagaagaa aaaggactca gtggacaggt      2760
     ggtgcgccac aaagcgaggc tcgttgccca gggatttgga caacggtacg gcagtgactt      2820
     tagtgaagtg tttgcgccgg tttcaatgcc gtcgacgttc agggtgctcc tggcgctagc      2880
     agggcacaag aagcttcaag ttcgtcacat cgatgtgaaa aatgcgtatc taaatggaag      2940
     actgagcgaa gaactctata tgcggcagcc cccgggatac gcggtacccg gtaaggagga      3000
     gctggtgtgc agactgcacc gaagtttgta tggactcaaa caggcagccc atgtctggaa      3060
     tgctaccatg aagaaggtat tgttgagctt aggatttaag caatcagatt cggacgcttg      3120
     cctgtttgcg aaacagttgg acaatggtga gtggatttat ctcttaatat atgtggatga      3180
     cattgtcgtg gttagtggtg atgagcgtca gatggatctc ttggagaatc aattaagtaa      3240
     gcattttgaa atctcgtcgt tggggccgat aagtcagttc ctaggcatca aggttgagaa      3300
     gagcagcgat ggattctatt cgctgagcca gaaagcgttt atcaacgaaa tcgcggaacg      3360
     ccatggactg gacaaggcca agacatcgaa ataccctcta gacacagggt acatgaagca      3420
     ggctgacagt gagccactgg ctgataacgt gcaataccac agtcttgttg gtgcgttatt      3480
     gtacttagcc actaacacca gaccagacat tgctgcagcc gtgtcgattc tcagtcgtag      3540
     tagcagccgt cctacgcagc gtgattgggt cgaactcaaa cgcgtcgttc gatacctgat      3600
     cggaacggga gatttggttt tgcgacttgg gctcaagcgt ggagatggat tgacactgac      3660
     tggatacagc gacgcagact gggctggaga tacctcggat cgtaagtcca caagcggatt      3720
     tgtgttcatg ctaggtggtg cggcgatcag ctggggcagt agaaaacaga actgcgtatc      3780
     aatgtccacc atggaagctg agtatgtcgc tctgtcagaa gcggcacagg aagcagtgtg      3840
     gttgcgacgc ttattgtgtg agttaggagc cgagcagcga caaccgacga agatcaacga      3900
     agacaaccgt agttgtatcg attttgtttc cctcgatcgg caaaacaaac gcagcaagca      3960
     catcgatact agacaacatc atgcgaagga tttgtgctcg aaaggagtga ttcagctggc      4020
     ctactgtcca accgatagga tgatggccga catattcacc aagccattgg gaccacagaa      4080
     gattaaccaa tacgtagccg accttgggct ggctaaggta aacagggata gattcgttca      4140
     gtagctcagc gaggaggag                                                   4159
//
ID   Copia-99_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-99_AA_;
KW   Ty1_copia_Ele2; Copia-99_AA-I; Copia-99_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 241 BP; 58 A; 62 C; 41 G; 79 T; 1 other;
     tgttgaacgt aagtatcttt ttaccacagg ggcgctgacc cactgaactg gaaataaagt        60
     gtaaacccac cttttkttat ttccgttgtt acctctcgtt ctcaatcgat cattaaagtg       120
     aacacgtttg taaacgcaag tcacgtcgtc gcgagttaat ttttctccga atcacaattt       180
     ccccacgcag taatcgattc cctgtgttat tctctgctct ggtggtcaat tccttcccac       240
     a                                                                       241
//
ID   Copia-9_AA-I repbase;    DNA;    INV; 4132 BP.
XX
AC   supercont1.25;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_AA_;
KW   Copia-9_AA-LTR; Copia-9_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4132
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.25; Positions 1090244 1086113.
XX
CC   Positions [1458-1985] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           303..4031
FT                 /product="Copia-9_AA-I_1p"
FT                 /translation="MEDTQLIHVVQKTTAKEMWDALRNYHERASLSSKIHV
FT                 VRKLVSTWMPEGGNMAEHLKTMTELQLRLTALGEELKDHWFVALMLSSLPS
FT                 SYDGLITALESRPDDDLTVDFVKGKLLDEGRRRMEKSPEREKVFVTEPARK
FT                 NKPNSVKQKVAKDKVCHYCKKEGHFRRDCRKLAQDRQEKERVSVAAECKKE
FT                 FEMCLAAGSVGEKGVWYLDSGATSHMTNDASFLGKLESREASICLADGNIV
FT                 KSTGAGSGQISCVNGEGARVKVNLGNVFHVPSLAGNLLSVGKIADLGLTVL
FT                 FEKSGCKVLKGSEVVLVGQRNGGLYHLKQFPDKALYTEVKHSDKCEHLWHR
FT                 RLGHRDSKAVMRIVREKLGHGLEINQCNVSSVCGPCFEGKMSRDSFPKASK
FT                 SRASEVGELVHSDLGGPMEVATPRGNRYYIVLVDDYSRYSVVYLLQHKSDA
FT                 ESKIREYCNMIKNQFGRFPKCIRSDGGGEFSGSALRKFFADNGIVQQMSAP
FT                 YSPQQNGVAERKNRYLKEMMRCMLVESGLEKKFWGEAINTANYLQNRCPSS
FT                 SIVSTPYELWSKKKPSYSHLKIFGSEAYVHVPKEKRKTLDAKSVKLVFVGY
FT                 EEGRKAYRFLDVQTGHITISRDAKFLELCSVKEAVRAEPAATGEVFEVPLS
FT                 SPPTEPDCESDLEEENDDFSDVNSVGSEVDLNSSLYGSADDNLSADEFPRR
FT                 SQRSTKGIPPSRLIEEIFVAGTVAGEVEPKNLKEALACKQKQEWKSAMLDE
FT                 LKSHSENGTWDLVDLPKGRKPVGCRWVFKLKRNAAGQVVKHKARLVAQGFS
FT                 QKFGEDYDEVFAPVTTHSTFRLLLAMASRKRMTLKHFDVKTAYLHGQLDEG
FT                 LYMAQPPGHVVKGKEHMVCRLRRSIYGLKQSARCWNKRLDTVLKSMGFKQS
FT                 STDSCLYTKKVNGKIVYLLVYVDDILVGCVDDSEIEVVYKQLKKYFDMTDL
FT                 GDLSYFLGMEVQKEPNGYSLSLKGYIKSVVEKFGLRDAKGAKTPMDAGYVK
FT                 EEDKSCALSDGKKYRSLVGALLYIAVCARPDIAVSASILGRKVSAPTEADW
FT                 VAAKRVVRYLKATSDWRLQYSNSGGDLVGFSDADWAGDIRSRKSTTGFVYL
FT                 YAGGAISWCSRKQSSVTLSSMESEYVALSEASQELVWLLKLLDDLGEPYDV
FT                 PVKVMEDNQSCITFASSERTTRRSKHIETRENYVRELCHDGILKLQYCPTE
FT                 DMVADVLTKPLGTIKQRKFSEMMGLSASGGNKG"
XX
SQ   Sequence 4132 BP; 1060 A; 813 C; 1247 G; 1012 T; 0 other;
     ataggtcatg ggcccagttg cgtgaaagtg cggtagttta attgagtggt ttgttcgtcg        60
     cgattcgtga attccgattt aatcgaggac agtaaagtgt acagtgccgg gaacaaaatg       120
     gccgacacca aagtttcgat tgagaagctg aacgaccaga attatgccat ctggaagttc       180
     aagatgcggc ttctgttgac gcgggagaag gtgctaagtg ttgtgaccga tccgaagcct       240
     gaaaatgctg atgcgacctg gatctcaaac gatgagaagg cgcaggcatt ggtccaaggc       300
     caatggaaga cacacagctg atccacgtgg tgcagaagac gacggcgaag gaaatgtggg       360
     atgctctgcg gaactaccat gagcgagcgt ctctttccag caagattcac gtcgtgcgga       420
     agctggtgtc cacgtggatg ccggaaggag gaaatatggc agagcacctc aaaacgatga       480
     ctgagctgca gcttcgactt acggcattgg gagaggagct aaaagaccat tggtttgtgg       540
     ctttgatgct gtccagtctt ccatcgtcgt atgatggcct gatcactgcc ctcgaaagcc       600
     ggccggatga cgatctcacg gtcgatttcg tcaagggtaa gctcttggat gaaggtcgtc       660
     gtcgtatgga gaagagtccc gaacgtgaga aagtgtttgt gactgagccg gctaggaaga       720
     ataagccgaa tagtgtgaag cagaaggtgg caaaagacaa agtgtgccac tactgtaaga       780
     aagaaggaca cttccgtcgt gattgccgaa agcttgcaca agatcggcaa gaaaaagaaa       840
     gagtttctgt ggctgccgag tgtaagaagg agttcgaaat gtgtttggct gctgggagtg       900
     ttggtgaaaa aggtgtttgg tatcttgatt ctggtgccac ctcccacatg acgaacgacg       960
     cctctttcct tgggaaactc gagtcaaggg aagcgtctat ttgcttggcc gatgggaaca      1020
     tcgtgaaatc gactggtgct ggttccggac agatttcttg cgtgaacggt gaaggtgctc      1080
     gagtgaaggt gaatctcgga aacgttttcc atgtgccatc gctcgctggc aatttgctct      1140
     cggtgggcaa gattgcagac cttggactca ctgtgttgtt cgagaagtcc ggatgcaagg      1200
     tgcttaaagg gagtgaagtt gtgttggttg gccaacggaa tggtggcctt taccatttga      1260
     agcaatttcc tgacaaggca ctttataccg aagtgaagca cagtgataag tgcgaacacc      1320
     tgtggcatcg tcgtctgggg caccgtgatt caaaggctgt aatgagaata gtgcgtgaga      1380
     aacttggaca tggtttagaa ataaatcagt gtaacgtctc gtcggtatgt ggtccctgtt      1440
     tcgaagggaa gatgagccgc gactcgtttc cgaaggcgtc gaagagccga gccagtgaag      1500
     ttggtgaact tgtccatagt gatttgggag gtccgatgga agttgcaacg ccgcggggca      1560
     atcggtatta cattgtgcta gtggacgatt acagtcggta ttcggtagtg tatttgctgc      1620
     agcacaagtc cgacgcggaa tcgaaaattc gtgagtactg caacatgata aagaatcagt      1680
     ttggccgttt tcccaagtgt atccgttccg atgggggcgg cgagttttcc ggaagtgcgt      1740
     tgaggaagtt tttcgcggac aatggtatcg ttcagcagat gtcagccccg tattcgccgc      1800
     aacagaacgg cgtggctgaa cggaaaaatc gttacctcaa ggagatgatg cgttgtatgt      1860
     tggttgaatc tggcttggag aagaaattct ggggtgaggc gatcaatact gcaaattatt      1920
     tgcagaatcg ctgcccgtcg tcgtcgatcg tgagtacgcc gtacgagttg tggagcaaga      1980
     agaagccatc gtatagccat ctgaaaatct tcggtagtga ggcatacgtg catgttccga      2040
     aggagaaacg gaagactctt gatgcgaaat ccgtgaagtt agtgtttgtt ggctatgagg      2100
     agggtcgaaa ggcatatcgc ttcttggatg tgcagacggg ccatattact atcagcaggg      2160
     atgcgaaatt tcttgagctg tgtagtgtaa aagaagccgt ccgcgcggaa cctgcagcga      2220
     caggagaagt gtttgaagtg cctctgtcgt cgccccccac tgagcctgat tgtgagtcgg      2280
     atctggaaga agaaaatgat gatttttcgg acgttaatag tgtgggatct gaagtcgatt      2340
     tgaattcgtc gttgtatggt agtgccgatg acaatctttc ggccgatgag tttcctcgtc      2400
     gttcgcagcg ttcaacgaaa ggaattcctc cgagcaggct gattgaagaa atattcgtcg      2460
     ctggaactgt ggccggtgaa gtagaaccga aaaacctcaa ggaagcgctg gcctgtaagc      2520
     agaagcaaga gtggaaatca gccatgctgg atgagctgaa atcccattcg gaaaacggaa      2580
     catgggatct cgtcgaccta cctaaaggac ggaagcctgt tggttgccgc tgggtgttca      2640
     agctcaaacg gaatgcagct ggacaggtgg tgaagcacaa ggcgcgtttg gtagcgcagg      2700
     gtttctccca gaaattcggc gaagattacg acgaggtatt tgctccggtt acaacacact      2760
     cgacttttcg gcttctgttg gcgatggcaa gtagaaagcg aatgacactc aaacattttg      2820
     atgtgaaaac cgcctacttg cacggccaac ttgatgaggg gttgtacatg gcgcagccac      2880
     ccggtcacgt ggtgaaaggt aaggagcaca tggtgtgtcg tttgaggagg agtatttacg      2940
     gactcaagca gtctgcaaga tgctggaaca agcgacttga tacagtgttg aaaagcatgg      3000
     gcttcaagca aagctcaacg gattcctgtt tgtacacgaa gaaagtgaat gggaagattg      3060
     tgtacctgct ggtctatgtg gatgatattc tcgtcggttg tgtggacgat tccgaaatag      3120
     aagtggtgta caaacagttg aagaagtact ttgacatgac ggatctcggt gatttgagtt      3180
     acttccttgg catggaagta cagaaggaac caaatggata tagtttgtcc ttgaaaggtt      3240
     acattaagag tgttgtcgaa aaattcggac ttcgtgatgc caaaggtgcg aagactccga      3300
     tggacgccgg atacgtgaaa gaagaggaca aaagttgtgc tttaagtgat gggaaaaagt      3360
     atcgcagcct cgttggcgcc ttgctgtaca tagcggtttg tgctcggccg gatatagcag      3420
     ttagtgcgtc gatactcgga cgtaaagtta gtgcacctac cgaggcggac tgggtagcag      3480
     cgaagcgtgt cgttcgctat ttaaaagcga caagtgattg gcgtttgcag tacagcaatt      3540
     ctggtggcga tctggtcgga ttttctgatg cggattgggc tggtgatatc cgttccagga      3600
     agtcgaccac tggttttgtg tacctgtatg ctggtggtgc gatatcttgg tgcagtcgaa      3660
     agcaatcgag tgtcacgttg tcttcgatgg aatcggagta cgtggcgttg agtgaagcga      3720
     gccaggaact agtatggctt ctgaagttgt tagacgatct tggtgaacca tacgacgtac      3780
     ctgtgaaagt gatggaggat aaccaaagct gcatcacatt tgctagctcg gagcgaacca      3840
     ctcggcgctc aaagcatatt gagacgcgtg agaactacgt gcgggaattg tgccatgacg      3900
     ggattctcaa actgcagtat tgtccaacgg aagatatggt agcggatgtt ctgacgaagc      3960
     cccttggtac gatcaagcaa aggaagtttt cggagatgat gggtttgtct gcaagtggtg      4020
     gcaacaaagg ttgaggagga gtattggaga gacaactttc gtgccacccc tattatgtgt      4080
     gcgactcgcg tgcacatctc tacactcgca gcagcggtgg caaccccaat gc              4132
//
ID   Copia-9_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   supercont1.25;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_AA_;
KW   Copia-9_AA-I; Copia-9_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-154
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.25; Positions 1086112 1085959.
XX
SQ   Sequence 154 BP; 45 A; 32 C; 23 G; 54 T; 0 other;
     tgtagcagca aagtgtaacg caagaaccgc catcttattt ccttcaaagt aaaatgtgct        60
     ctcgctgtgt aaacatcgtt tcgtttaata caattcttta tttcgtttga ttaattaaat       120
     actgcgtttt aattccactg gaacatacgt ccca                                   154
//
ID   Copia-9_CQ-I repbase;    DNA;    INV; 4019 BP.
XX
AC   AAWU01013178;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_CQ_;
KW   Copia-9_CQ-LTR; Copia-9_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4019
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 333-333 (2011).
XX
DR   GenBank; AAWU01013178; Positions   17070   13052.
XX
CC   Positions [1400-1918] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           437..4009
FT                 /product="Copia-9_CQ-I_1p"
FT                 /translation="MHLQRQILSMRFDGGRLTDHFLRFDKLVREFRGTGAV
FT                 MDDIDAVCHLLLTLGSAFATVVTSIETMAEENLSMEFVKCRLLDEETKQKG
FT                 LGVDSLTAGNEAAAFSGMKMQKKIRCFSCKKEGHKSVDCTEKKKRKQQYNQ
FT                 KQHGAKANVAGTSERNSVCFVGVSGGEPQKVQRRVKWFLDSGASDHLAREK
FT                 ELFVKLHKLSKPIEIAVAKDGEFIVAEHAGTVKMFSVVGGRSVECTVKDVL
FT                 FVPQLRYNLFSVVRIEKAGMRVVFDGGKALIYRGDEIVVCGARRDKLYELD
FT                 FRPFDCEKSLLSCGRVQSDSVLWHRRFGHLNERSLTDLARNDMVSGLTLTV
FT                 DKGVDQTIVCQSCIEDDWSHFTVVFLMRSKDEVLGCFEQYEALATAKFQTK
FT                 VSRLRCDNGGEYTGRRFKQFCRTKGIQIEFTVPYTPEQNGTSERMNRTLVE
FT                 KARTMLLDSGLDKRFWGQAVRTAAYLLNRSPTSAVVYKQTPFELWEKKKPD
FT                 VSKLRVFGCETFVHVPKELRKKLDPKSWRGFLVGYAANGYLVWDPVNKRIV
FT                 TARDVDFVETKTTVKKNDQHEVEQFVVCPIPDEAEEPVAPVAPAEREGEEE
FT                 VTSDEEFGSFDDDEEADGDQEELDAGGVPAAKEGPVGEDPEVGADADPGRP
FT                 PRDRTAPSWHRDYDMDYAGFALCATSFLDNIPQTIAELKKRDDWCRWKSAI
FT                 DEEIDSLGRNKTWTLTKLPAGRTPVTCKWVFCVKRGDGVVADKYKARLVAR
FT                 GFSQKVGFDYTETYSPVAKLDTLRLVLALAHRQEMHVHQMDVKTAFLNGIL
FT                 HEEIYMTQPDGFQQGKDLVCRLHRSLYGLKQASRAWNERFDEFIQKLKFVR
FT                 SPNDQCLYVRGTGREQIIVVLYVDDILVVGSSLKLVKVVKKCLNGEFEMTD
FT                 AGEVGQFLGLTIDRQPGVMRISQRRYFESLLQRFGMMECKPTSTPMENRLQ
FT                 LEKGVEAQRTTKPYRELIGCLMYAALTTRPDLSAAVNYFSQFQACPNDEHW
FT                 IHLKRVLRYVKGTLDVGLVYRIEKEAPLLEVFCDADWANDLVDRRSVTGCI
FT                 FKLYGCTVNWITRKQPTVSLSSTEAELAALCTAACHTLWMVRVLRDLGLQP
FT                 DGPISLHEDNQSTIRIAEDARDHGRLKHIDTKFHFLRDLINEGVLELKFVR
FT                 SSAQQADMMTKGLPATSFRELCTKIGLGRCCG"
XX
SQ   Sequence 4019 BP; 941 A; 920 C; 1286 G; 872 T; 0 other;
     tccgaacctc ttttaggtta tgggcccagc ccgttgctaa tccgggttgt cgtttcttag        60
     taaacttgtc gggatgtcgg aggacgcggt tgtgcgcgag gatcgctacc atgtcgcgct       120
     gtttgacggc aggaactttg ccgcgtggaa gtatcgagtt ctggtactcc tggaggagta       180
     cgagctggac gactgcattc tacacgaggt tggagagctt cctgagctga ttccgaagac       240
     ggaagattcg acgacggttt cggcggaaaa ggagaagagg cggaaggaac agctgaagag       300
     aaggcggaag tgcaagcgtt tgttgatcga gcgcattcac gattcccagc tctagtacgt       360
     tcaggacaag cagtcgccga aggaaatctg gacgacgctc aagaatgtgt tcgaacggaa       420
     gagcgtcgcg agccgtatgc atctccagcg gcaaatcctg agcatgcgat tcgacggtgg       480
     ccgtttgacg gaccacttct tgcgcttcga caagctggtg cgtgagttcc gtggaaccgg       540
     ggccgtaatg gacgacattg acgcggtttg tcacctcctg ctgacgcttg gttcggcgtt       600
     tgctaccgtg gtgacgtcga ttgagaccat ggcggaggag aacctgtcga tggaattcgt       660
     caaatgtcgg ctgctagacg aggagacgaa gcagaagggt ttgggcgtcg attcgctcac       720
     cgccgggaac gaggctgctg ctttctccgg aatgaaaatg cagaagaaga tccgctgctt       780
     cagctgcaaa aaggaaggcc acaagagtgt agactgcacg gagaaaaaga agaggaaaca       840
     acagtacaac caaaaacaac acggtgcaaa agcaaacgtt gctggcacga gtgagcgaaa       900
     cagtgtttgt tttgtgggcg tgagcggcgg cgagccgcag aaagtgcagc ggcgggtaaa       960
     gtggttcctt gactccgggg cgtcggacca tctggcgcga gagaaagagt tgttcgtcaa      1020
     gctgcacaaa ctgtcgaaac cgatcgagat tgctgtggcc aaggacgggg agtttattgt      1080
     ggccgaacac gctggcactg tgaagatgtt ttctgttgtg ggtggccggt ccgtcgagtg      1140
     cactgtgaaa gatgttcttt ttgttccgca actgcgctac aacttgtttt ccgtggtacg      1200
     gatcgagaaa gccgggatgc gggttgtttt cgacggtggt aaagcgctga tttaccgcgg      1260
     cgacgaaatt gttgtgtgtg gtgctcgacg tgataagctg tacgagctgg attttcgtcc      1320
     tttcgattgc gagaagtcgc tgttgtcttg tggccgcgtt cagagtgatt ctgtgttgtg      1380
     gcaccgtcga tttggccacc tcaacgagag aagtttgaca gatctcgcgc gaaacgacat      1440
     ggtgtcaggg ctgacactga cagtcgacaa aggagtcgac caaacgattg tctgccagtc      1500
     gtgcatcgaa gacgattgga gtcactttac cgtcgtgttc ctgatgcgat cgaaggacga      1560
     agtgctgggc tgtttcgagc agtacgaggc gctggccacg gcgaagttcc agacgaaggt      1620
     ttcccgtttg cggtgcgaca acggtggcga gtacaccggc cggcgtttca agcagttttg      1680
     ccgtacgaag gggatccaga tcgagtttac agttccgtac acaccggaac agaacgggac      1740
     gagcgagcgc atgaaccgga cactggtcga aaaggccagg acaatgctgc tggattcggg      1800
     actggacaag cgtttctggg ggcaagcggt gcgaacggcg gcatatttgc tgaacaggag      1860
     tcctaccagc gcagttgttt acaaacaaac accgttcgaa ctttgggaga agaaaaagcc      1920
     ggacgtttcg aagctgcgag tttttgggtg cgaaacgttt gtacatgtgc cgaaggaact      1980
     ccgaaagaag ctggacccga agtcttggcg tggtttcctg gtcggttacg ctgcgaatgg      2040
     gtatctggtc tgggatccgg tcaacaaacg aattgtcact gctcgagatg tggattttgt      2100
     cgaaaccaaa acgaccgtga agaagaacga ccagcatgaa gtggagcagt tcgtggtgtg      2160
     cccgattcct gacgaagctg aagaacctgt cgcccctgtc gcgccggccg agcgcgaggg      2220
     agaagaagaa gtgacgtccg atgaagagtt cggcagtttc gacgacgacg aagaagctga      2280
     cggcgatcaa gaagaactgg acgcgggagg agttcccgcc gcaaaagaag ggcctgtcgg      2340
     agaagatcct gaagtcggtg ccgacgctga tccaggtaga ccgccgaggg atcgtacagc      2400
     tccatcctgg catcgtgatt acgatatgga ttacgctggt ttcgccttgt gtgctacaag      2460
     tttccttgac aacattccac aaacgattgc tgagctgaag aaacgggacg actggtgcag      2520
     atggaaatct gccattgacg aggagatcga ttcgctgggg cgcaataaaa cttggacctt      2580
     gacgaagctc cccgctggtc gcacgccggt tacctgcaag tgggtgtttt gtgtgaaacg      2640
     cggtgacgga gttgtggccg acaaatacaa ggcgagactg gtggctagag gctttagcca      2700
     gaaggtggga ttcgactaca cggaaacgta ctccccggtg gcgaagctgg acacgctgcg      2760
     actggtgttg gcgctggcac atcggcaaga gatgcacgtt caccagatgg acgtaaagac      2820
     ggcgtttttg aacgggatcc tgcacgaaga aatctatatg acgcagcctg acgggtttca      2880
     gcaggggaag gacctcgttt gccgactgca tcgttcgctg tacgggctca aacaagcgtc      2940
     gagggcgtgg aacgagcgtt tcgacgagtt catccagaag ctgaagttcg tccgtagtcc      3000
     taacgaccag tgcctgtacg tacgaggaac cggaagagag cagatcatcg tagtactgta      3060
     tgttgatgac attttggttg ttgggtcttc gctgaagctg gtgaaggtcg tgaaaaagtg      3120
     cttaaacgga gaattcgaga tgacggacgc cggcgaggtg ggacagtttc ttggattgac      3180
     catcgatcgg cagccagggg tcatgcgaat cagtcagcgg cggtatttcg agagtttgct      3240
     acaacggttc ggcatgatgg agtgcaaacc gacgtcgacg ccgatggaga atcgtttgca      3300
     actggagaag ggagttgaag cgcagcgtac caccaaaccg tacagagaac tcattggctg      3360
     tttgatgtac gcggcactca ccacgaggcc ggacctgtct gctgcagtaa actactttag      3420
     ccagttccag gcatgcccga atgatgagca ttggatccac cttaaacggg tgctcaggta      3480
     tgtcaaagga acgctggatg tcgggcttgt ctatcggatc gagaaggagg cgccgttgct      3540
     ggaagttttc tgtgacgctg actgggcgaa cgacctggtc gatcgacgat cggtgacagg      3600
     gtgcatcttc aaactgtacg gttgcacggt gaactggatt acccggaaac aaccaaccgt      3660
     ttcgttgtcc tcgacggaag ctgaacttgc agcgctgtgt accgccgcgt gccatactct      3720
     ctggatggtg cgggtgctcc gcgacttggg gttgcagccg gacgggccga tttccctgca      3780
     cgaggacaat caatcaacaa ttcggattgc cgaggatgcg cgtgatcacg ggaggctcaa      3840
     gcacatcgac acgaagtttc atttcttgcg agatttgatc aacgagggag tgttggagct      3900
     aaagttcgtg cgttcttcgg cacagcaggc cgacatgatg accaagggcc ttccggcgac      3960
     ttccttcagg gagttgtgca cgaagatcgg gcttggacgg tgctgtggtt gagcagggg       4019
//
ID   Copia-9_CQ-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   AAWU01013178;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_CQ_;
KW   Copia-9_CQ-I; Copia-9_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-158
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 334-334 (2011).
XX
DR   GenBank; AAWU01013178; Positions   13051   12894.
XX
SQ   Sequence 158 BP; 41 A; 42 C; 25 G; 50 T; 0 other;
     tgttgagatg gcaaccactg ccccattacc tttgcgcgct actgcgccaa cagaactgtc        60
     agcagatgtt cctgtttact ttgtttacaa taaatcttag tcttttaaca accgctctaa       120
     acgtaacaca cgtgttttaa ttatcctcct gtaagcca                               158
//
ID   Copia-9_DTa-I repbase;    DNA;    INV; 4086 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4086
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5634-5634 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4086 BP; 1353 A; 779 C; 968 G; 986 T; 0 other;
     ttggttatgg gcccagtctc gcgaaactaa gatgagtgca tatcaaatag aaaagttaag        60
     tgatcagaat tacgatgtgt ggagtattca gatgcgaagt gttctggtac accaagaact       120
     ttggggcatc gttagtggca agctgaagtt gactaacgag tcaacatccg aggaagctgc       180
     caaatggaac ttaatggacg aaaaggcatt ggcatgcata attcttaatg tgaatgtgtc       240
     gcagttaagt tatgtgaaaa atgcaacctc agcgctagca gcatgggcca agttgcgcga       300
     ggtgtatgtc tcaagaggac cacttcgaaa agtgttgttg tttaaaaaac tgttaaattc       360
     gaaatactcg gcagatcaaa gcatggttca atacttgaac aatttcgagg aaataattga       420
     caaattgaac gaagtgaacg tcgaaatacc cgaggagtta aaagtgataa ttctaatgtc       480
     aagtttaagt gcggagtatg aacattttgt tgttgctatg gaaacaagag attcgctacc       540
     ggtctttgaa tcactcaaga tcaaactttt ggcagaggcc gaaagaatga acgagaaaag       600
     tgagaaggat agcaagcaac acgcgtatta tgctggttcg ggaagcgaaa aacaaaacgc       660
     acatgcaaag gaaaacggta aatttaacgg aaagtgtttc gtgtgtggca aacgtggcca       720
     caaagcaacg cagtgtagag agagaggaaa agacggtaaa ggcaaatttc aaagcgaaga       780
     gagaagcaat gaaagattat cgttttcggt ttttgctgct gtgaatcagg agaacataac       840
     aaaacagact tggtgcctgg acagtggggc aacttctcat atgtgctgtg tgaaaagtgc       900
     gtttgtttcg ttggtcgaag aaaaagacaa agttatgtta gcagcggaca aaataattga       960
     atcgcctggc aaaggaaaca tcaaaataaa aaccagcgat tgtgaaataa cattgcaaga      1020
     cgtgttgtat gtgccagatt tacaaatgaa tttcttttcc gttagcaaag caatgcagta      1080
     tgggcattcc gtgtatttta aagaaaatcg cgcgacagta acggcaaaag atggagctgt      1140
     tatattaagg gcgcaactgc aaaacaattt atttttgttc agtgacttaa acgtgaaccg      1200
     attgttctca gtgcaacaaa aggcggtcgt gtggcataat cgatatggtc accttaattt      1260
     tcgaaacctt aaggaactga tagtaaatca acgtgtaaaa ggcattgacg ttaataacat      1320
     tccggttgaa ataaattgca acacctgcaa caaatccaag atttgtgttt tgccattccc      1380
     taaaaaaagt cacgcgcgag caaataacat tttggaacta gttcattcgg acgtgtgcgg      1440
     accgataaat gtgaaatcga taagtggcgc aaagtacttt ataaccttta tcgatgattt      1500
     ttcaaagcga gtgtttgttt actttatgca aaccaaggat caggcatttg aaaagttcaa      1560
     aatgttcaaa cagctagttg aaaatcaaac acaaaagcga attaaagcga ttcgcagtga      1620
     caatggcggg gagtatataa accacaagtt cgacgaatat ctgcgtgagt gtggaattaa      1680
     gagacaatta accgtgccat acaccccgca acaaaacggt gtggccgaaa gagcgaatag      1740
     aacgcttgtt gagatggcgc gcagtatgat gctgcacaaa aacattgagg agccattgtg      1800
     ggcagaagct gttgcaactg caagctactt acgaaataga tctccatcgc aggcgctcga      1860
     cgggatcacc cctatggaaa agtggagcgg caagaagcct tcggtcgcgc atctacggat      1920
     ttttggttca cccgtatatg cactggataa gatgcatcac cacaagtttc gtgccaaggg      1980
     caaggagtac acgttcgtcg gctactcgct caccgccaag gcatatcgac tattcgacaa      2040
     tgaggctcga caaatcgtag aaaagcggga cgtcaaattt gttgaaggcg aagaagtatc      2100
     gggtaatcaa caggcaagca ctaacgattt tacttcattt atcttagagt ttccacaagc      2160
     cgcaacagat tcagaagaag tcggtgcagc agagggcgaa gttggagaag aagcagcttc      2220
     agaagaagtc ggtgcagcag agggcgaaat agcacaagca gctccagaag aagtcaacgc      2280
     ggagaactca gttccagaag gcgtgcatcc agatccagat gagcaaaact ctgatgacga      2340
     cgagttcgag agttttgaag aagataatgc cagtccgcca agcagccccg ttgatggtgt      2400
     acgtgctcac cgtggtccag gtaggcccaa gattatacgc actggccagc gaggtaggcc      2460
     aagaaaagag tacaatatgg tcaacaatat tgtaagctat catgacattg agacgcccga      2520
     cacagtaaaa caggcactaa cgggcacgca ttcgtctaag tggcaaaatt ctatggaacg      2580
     tgaatatgag gcccttatcg aaaacaagac ttggtctttg gtagatcttc cttcaggtgc      2640
     aaaagctata ggatccatgt gggtgttccg agttaagcga gatgttgaag gaaatatcat      2700
     aaggtttaag agcagacttg tagccaaggg gtgcagccag caatatggaa taaattacta      2760
     cgaaaccttt tcacccgtca ttcgatatga gaatataagg cttttgttgg cagtagcagc      2820
     agaaaaggag ctataccttc atcaaatgga tgtttcaaat gcatatttga acagtaaatt      2880
     gaacgaaata gtatatatga agcagccaga gaatttcgtc agcgatcaac atcccaaccg      2940
     cgtgttaaag cttaacaaag ctatatatgg cctcaaacag tctggcaggg cctggaatag      3000
     cacactggat gacactttaa aaggattggg ctttgaggct actacaagcg agccgtgtct      3060
     gtataagaaa ataagtcaga attcgtacaa tttgatagcc atatacgtcg atgacatcat      3120
     attagcttgt tcgcaaaaga gtgatctgga tagtatcaaa aagaagttgc acgaaagttt      3180
     tgatattcat gacatggtcc attgcatcac tttcttggaa tggagataca gcgacagggt      3240
     gagcgtggta caatttctgt gtgtcagaag cagtacatta aatctctact tgagaagtac      3300
     aacatgaatc agtgccgatc tgtttcaacg ccgttaaacc ctggatttca aattcgctgc      3360
     gatagtgaca actgtgccga agtagataca actgactatc agtcacttat cggatctata      3420
     atgtacctgg ctatttcaac gcgtcctgac atcatgcact ctataagcaa gttagcacag      3480
     cgaaactcca acccacatgt cgagcatgag tctggcgcaa aacacatttt gcgatatctg      3540
     tcgaagacga tcgacttaaa gctacactat cgcaagaccg gtcaacgatt gcatgcgttt      3600
     gtcgatgcag actgggcaaa cgatagtctg gatagaaaat cgtactctgg gtactgtttt      3660
     tacctgggtg gatcagcttt ctcctgggaa tccaaaaagc aaggattagt cgcgctcagc      3720
     agcaccgagg ctgaatacat tgctttatcc actgcatcca gagaagcaat ctacttgcgt      3780
     cgtctactaa aagaaatagc atttcatccg aaagcagagc ccatcgagat aaacggcgac      3840
     aacttaagcg cacagcagat tgcatcgaat cctgtgcatc acaaaaggac caagcatgtc      3900
     gacatcaagt atcatcatat tcgcgaggtc attgctagag gagaagtttt tataaaatat      3960
     gtccccacca acgaaaatgt agcagacatc tttactaaaa acttacagaa agaaaagcat      4020
     aataattttg taaagtcgct tggtttaaat gaaaaattgt aaggaacaat ctaacttgag      4080
     aagaag                                                                 4086
//
ID   Copia-9_DTa-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-9_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-195
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(10), 5624-5624 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 195 BP; 38 A; 42 C; 32 G; 81 T; 2 other;
     tgttgaagtt tacaagttat atcgttctac ttgcacatct ctaagcgata gtttctccta        60
     ttcctttttc ttcttgtttt ctsccgctct atgatgcttt gtacctctma ctcaataaaa       120
     tacgtttgtc gtgtgcgcac gtaaattcgg cgttctttct tggtatttgg tatcggctcg       180
     atttcagcat taaca                                                        195
//
ID   Copia-9_DWil-I repbase;    DNA;    INV; 4109 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_DWil_;
KW   Copia-9_DWil-LTR; Copia-9_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4109
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1807-1807 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1451-1951] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           824..2164
FT                 /product="Copia-9_DWil-I_1p"
FT                 /translation="MKNEAINIAECAYNAERKSNLWCLDSGCTAHMSSNKN
FT                 AFDQVQGIDKTLHLANNNTAEVKGVGEINIEVKEKQHTNGITLKEVLYVSD
FT                 LRQNLLSVSRITNKGYEVIFRKDEAVIMKNNNQVWFRAQRYGNLYYVNAEE
FT                 HESNNVCDDGNEIDLWHYRMGHLNEVDLKCLAKAGKVHGMNIKENAKLSQC
FT                 EICISEKQAANAYKSSTVKRSKQTLEIVHSDLCGPMRTQSMSGYKYFITFT
FT                 DDFSRYCSVYFLKQKSEVFEVFKSYKSFVENVTGHKIKMLQTDNGTEYRNK
FT                 GFDEYLNKHGIGRRLTVPHTPQQNGIAERQNRTLVEMARCMMKQAGAPPSF
FT                 WAEAINTACYIRNRCPTKGLSGELPYTYWTAKVPSVRHMRTFGTKAYALMK
FT                 GKNKGKFESRSEECILLGYSSESKAYRLYQPKRREILISNEHFRIQKRISR
FT                 IL"
FT   CDS           2124..4085
FT                 /product="Copia-9_DWil-I_2p"
FT                 /translation="MNISGFKSEFQEFYDEPENGVDIPLGDQVDETERSSS
FT                 SDEDTEEVFQRERRGRGRPKLMRTGQRGRPRKIYQQGRNVSADEHIDQQDE
FT                 LDSAEDIFEECEMAFAVATDDPVTIKEAQGSGDAENWTRAMEDEFMAQILN
FT                 KTWEIVERPKGRKVIGNKMVFQTKDNGTPTGRKKARLVAKGYAQKPGEDFH
FT                 ETYSPVARFTSVRLLAALSAEYDMEIHQMDVVTAYLNGELEEKVYMDIPEE
FT                 FNEFMQKVNSGAPMGSNQQRPDAEYKRAANQWRKAVTEMRDPVCLIRRALY
FT                 GLRQSGLQWYCKLTTKLQEIGLEATEQDPCLFVKMIKGKLLIVTIYVDDLL
FT                 IASNHPEWLQQTKEHLNKTFKMKDFGAVKTCLGIEFKQNKEQQSVFLSQEK
FT                 YIDAILKRFGMTDCKPAMTPIEAKSELRSPAESNEDEMGKYPYQKLIGSLM
FT                 FLSVTTRPDIAYAVSFLSQFNSNYTADHWKASKRILRYLQGTKMTGLLFRK
FT                 TGDDLFGVVDADWGGNLTDRRSYSGQAFILAGAAISWEARKQRTVALSSTE
FT                 SEYLAMSEAVKEALYLKALLNRIGIECGSVRIFNDNQSAQHMVKGFGFHPR
FT                 TKHIDVRHHFIQAMYKSGDISVEYMPTELMAADVLTKGLSGKKHNECIISL
FT                 GISCN"
XX
SQ   Sequence 4109 BP; 1370 A; 766 C; 1036 G; 937 T; 0 other;
     ggttatgggc ccagacccat atgtgtaatt gaaaagacaa taagtgaatg caaaagctgt        60
     gcaaaatggc aagtgcactc ataaagatag aaccgctcaa cgcggagaac tatgacacgt       120
     ggaaactgcg aatgcgtgcc attctcgtga aaaacgattt atggcaatat gtgaacggct       180
     ccaaggtatg cccagaggcg gcagcggatc gagcggcgtg gcaaacacaa gatgaaaaag       240
     ctcgagcaga cattttgctg tccatcagta cagcagaatt gggactaatt gaaagctgtg       300
     gatcagcaag agattattgg ttgaaattgg aggaaacatt tcaatccaag gggcctgtgc       360
     gaaaggccag tttactcaaa cgagtggcgc tatcccgtat gtgtgagggt agtgatgcgc       420
     gtcacatata aatgacttct ttgacgcggt taagaaatta aaagaaatag gggtaactat       480
     aggcgacgac ttactcgcaa ttctcttatt gtatagttta ccggatacct atgagacttt       540
     ccgatgcgca atagaaacac gtgacgaatt gcccagccct gatattttgc gtgtgaagat       600
     attggaagag tcagaagcac gccaagccaa aaaagcgcgc gaagagcaga gtgcgttata       660
     tgtcaaccgc cgcaaaggca acgacagaga gggaagcacg aaaagagaca cacgaaaatg       720
     ttttgcgtgt gacaagatcg gacatttcgc tcgtaactgt ccaactaaag cgagaccgca       780
     tgcaaagaaa gagagggaag agccaaaaga gaacaaaaag caaatgaaga acgaagcaat       840
     caacattgca gaatgtgcgt acaatgcgga gagaaaaagt aacttgtggt gtctagacag       900
     tggctgtacc gcacatatga gttccaacaa aaatgcattt gatcaagtac aaggtattga       960
     taagacattg catttggcca acaacaacac cgcagaggtg aaaggcgtcg gcgagattaa      1020
     cattgaagtg aaagagaagc agcatacaaa tggaattacc ttaaaagaag ttttgtatgt      1080
     gtctgaccta cgacaaaatc tgctttcggt atctagaatt accaacaagg gatacgaagt      1140
     tatatttcgt aaggatgaag cagttattat gaaaaataat aatcaagttt ggtttcgagc      1200
     tcagagatac ggaaatctgt attacgttaa tgccgaagaa cacgaatcaa ataatgtgtg      1260
     tgacgatgga aatgaaatag atctatggca ttaccgtatg ggtcatctga acgaggttga      1320
     cctgaagtgt ttagccaaag ccggaaaggt acatggtatg aacataaagg agaatgcaaa      1380
     actatcgcag tgtgagattt gcataagcga aaagcaggca gcaaatgcct acaagagctc      1440
     gacggtgaaa aggtcaaagc agacattgga gattgtgcac agcgacctgt gcggaccgat      1500
     gcgtacccag tctatgagtg gatataagta ttttatcaca ttcacagatg atttttccag      1560
     atattgttca gtttattttc tcaagcaaaa atcggaagtt ttcgaagtat ttaaatcata      1620
     taaatctttc gttgagaatg ttacaggtca caagataaag atgttacaga ctgataatgg      1680
     gacggaatat cgaaacaagg gattcgatga gtacttgaac aagcatggaa ttggccgacg      1740
     actcactgtg ccccacacac cccagcagaa tggtatagct gaaagacaaa atcgtacact      1800
     ggtagagatg gccaggtgta tgatgaagca agcgggcgct ccaccatcat tttgggcaga      1860
     ggcaattaac acggcgtgct atatcagaaa tagatgtccc acaaaaggat tatctggaga      1920
     gttgccatac acgtattgga ctgcaaaagt tccgagtgtg agacacatgc gtacttttgg      1980
     cacaaaagcg tatgcactaa tgaagggcaa aaacaagggc aagttcgagt cacgatcgga      2040
     ggaatgtata ttattgggat attcatcaga gtcgaaagcc tatcgactgt accaaccaaa      2100
     acggcgtgag attttaataa gcaatgaaca tttcaggatt caaaagcgaa tttcaagaat      2160
     tctatgacga gccagaaaat ggcgtagata ttccactagg cgaccaagtg gatgagactg      2220
     agagaagttc atcaagcgac gaggataccg aagaggtatt tcaacgtgag cgacgtggta      2280
     gaggacgacc aaagcttatg agaaccggtc agcgtggtag gccacgcaaa atatatcaac      2340
     aaggaagaaa tgtttcggca gacgaacaca ttgatcaaca ggatgaacta gactcagctg      2400
     aggatatatt cgaggagtgc gaaatggcat ttgcagtagc tacggatgat ccagtaacca      2460
     tcaaggaagc ccaaggcagt ggcgatgctg agaactggac aagagctatg gaagatgagt      2520
     ttatggctca aattctcaac aagacctggg aaattgttga gcggcccaaa ggccgaaagg      2580
     tgattggaaa caaaatggtg ttccaaacaa aggacaacgg cactccaaca ggacgaaaga      2640
     aggcgcgttt agttgcaaag ggttatgcac aaaaaccagg agaggacttt cacgaaacgt      2700
     attcgcctgt ggcgcgattt acatcggtta gactgctagc ggccttatca gctgaatatg      2760
     acatggagat ccatcaaatg gatgtggtca cagcatacct caacggtgaa ctggaagaga      2820
     aggtatacat ggatattcca gaagagttta acgagtttat gcaaaaggtg aactctggag      2880
     ctcctatggg atcgaatcaa caacgccccg acgcagagta taagagggca gcaaatcaat      2940
     ggcgcaaagc tgtaactgag atgcgagatc ccgtgtgtct aataagaaga gctctatatg      3000
     gactacgcca gtccggacta caatggtatt gtaaactgac aacgaagctg caagaaatcg      3060
     gactagaggc cacagaacag gacccctgcc tgtttgtgaa aatgataaaa ggaaaacttt      3120
     tgatcgtcac gatttatgtt gatgatttgc taatcgcatc aaatcatcca gaatggttgc      3180
     agcaaacgaa ggagcatctt aataagactt ttaagatgaa ggactttggc gcagtgaaga      3240
     cttgtttggg catagaattt aaacagaaca aagagcagca gagcgtcttt ctatcccaag      3300
     agaagtacat cgatgccata ttgaaaagat ttggcatgac agattgcaag ccggcgatga      3360
     cacctataga ggcaaaatca gaattgcgga gcccggctga atctaatgaa gacgagatgg      3420
     gaaagtatcc ttatcaaaaa ttaataggtt ctttaatgtt tctttcagta accactcgtc      3480
     ctgacatagc gtatgcagtg agtttcttga gtcagttcaa ctcaaattac acagctgatc      3540
     actggaaggc atcaaaacgc attttacgtt atcttcaagg cacaaagatg accggacttc      3600
     tgttcaggaa gacaggagat gatcttttcg gcgtggtcga tgcagattgg ggtggcaatt      3660
     taacggaccg ccgctcctac tctggccaag cgtttatatt ggctggtgcc gccataagct      3720
     gggaggcacg aaagcaacgt actgttgcat tgtctagtac ggaatcagaa tacttggcaa      3780
     tgtcagaggc agtaaaggag gctctatacc tgaaggccct actaaacaga attggtatag      3840
     aatgtggatc tgtgcgcatt ttcaacgata atcaaagcgc acaacatatg gtcaaagggt      3900
     ttggattcca tccacgtaca aaacatattg acgtgcgtca ccacttcatt caagcgatgt      3960
     ataagagtgg tgatatttcc gtggagtata tgcctacgga actaatggcg gcggatgtcc      4020
     taacgaaggg tttaagcggc aagaaacata atgaatgtat catttcgtta ggaattagct      4080
     gtaattaaga ttgcaacttt gtgggggtg                                        4109
//
ID   Copia-9_DWil-LTR repbase;    DNA;    INV; 246 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_DWil_;
KW   Copia-9_DWil-I; Copia-9_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-246
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1808-1808 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 246 BP; 69 A; 48 C; 53 G; 76 T; 0 other;
     tgttcgatat tagcgccagc tgtttatatc aaagtggcaa tctggcatcc ctagtaatat        60
     taaggagatc tggcagcgct taacagagaa agagagttgg cttctgttct tggcactgta       120
     cagacgtgta gttaagttct aataaagtta catatgtata ttcgcaaata agcgtattgc       180
     cctttctttt atacatagct gcgcgaccaa atatcgcggg gtctctcgga atcagatttt       240
     ccaaca                                                                  246
//
ID   Copia-9_LH-I repbase;    DNA;    INV; 4220 BP.
XX
AC   ADOQ01004008;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_LH_;
KW   Copia-9_LH-LTR; Copia-9_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4220
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004008; Positions    3243    7462.
XX
CC   Positions [1606-2136] - Integrase core
CC   'ATAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..1106
FT                 /product="Copia-9_LH-I_3p"
FT                 /translation="MARDVKYDHYNVDPLNGNNYEAWKFRVNTILVEQNVE
FT                 EMIKTEYQAEGYADDNRREEAKKKDNKCKSIIVQCIEDTQIDIVRNKDTAY
FT                 AMWKSLKDMYEKKGLSGQLFLRRKLMSMKMEKNKKIEDFLLKFDRVLCQLK
FT                 TSGAEIREEDTICMLLLALPKSYETVVTVLENVPIESLNMDFIKAKLRTEA
FT                 EKKKEVSGSRDEMVKPIAFVSKNSLTCHNCGEDGHFKRDCKKPIQNQPSYN
FT                 GNRGNAYRGEINRGGRYQRGGNFGGRSRYQRRGHYHSNSRYNQNQDTRKGN
FT                 YVKAEDAGDDSVCFMSDRNKSIQDRGNDTIVFLYRFGVYRPLDK"
FT   CDS           join(1054..2721,2725..3960)
FT                 /product="Copia-9_LH-I_1p"
FT                 /translation="MIQLFFFIDSGCTDHLINEKRHFNDLMMLKNPIKIAI
FT                 AKDENYIEAIGIGNVNVLSYVNGKTVKCVIKNVLYVPNLRRNLLSVKKLEM
FT                 CIIKVIFENGKVKLFSGQNLIGIGIRNNLYEIFFKVVRSECLNIEVEDEKT
FT                 KLWYKRYGHMSYANLKKLIDYEMVDGIKKLNLNKVEFCESCVNGKMTRLPF
FT                 KTRNRSSSLLEIVHSDVCGPITPISHDNNRFFVTFIDDYSNFVCVYIIKNK
FT                 NKVFDCFREYAQMVQTKFKKRICTLRCDNGREYYSNGFKNYCKENGTVIDY
FT                 TVPYTPQQNGKAERFNRSLVEKARSMMSDSNVPKHFWNEAIRTAAYILNRS
FT                 PSINLESVTPAELWYDRRPYVTNLRVFGSIAYSHVPEQFRDKFDEKSEKCV
FT                 MMGYAQNGYRLWNIEKRKIQISRNVVFNKSAFYYKMNKKVAISSEEDDGTK
FT                 DKEAIVENETSCESEEELDRDNLQETIEQVDVKNSQRNKKVPKRFDDYEMY
FT                 MAFDALSYIEQVPKDYSELNDREDRDAWRKAMDREIESINKNNTWKSVIKP
FT                 NDAEILDTKVYSYKSLETDQLDKYKARLVVRGFAQKKTFDYEELYSPVAKM
FT                 TTIRTLLSIGNQFGYYFRQLDVRTAFLNGDLKEDIYIYPPNGVRHKAGHVF
FT                 KLNKSLYGLKQSSKCWNNKINDFLLNLGFKRSNNDYCLYSKVHKNEVVYLL
FT                 LYVDDIILTGPDLDHIEYFKTKLTNEFDIKDKGELKNFLGLEIVYDKMKGI
FT                 LKINQKRYILGILKKFNFENCKPCLTPIEPRLKLTISESKNERDKPIKEMI
FT                 GCLMYLMLGSRPDLSFAINFFSRYQDKYPDEIWNHLKRVLRYLKGTTDLSL
FT                 VYVRKEKEYPLICYVDSDWGGDLHDRKSVSGYLIKVFGNTVSWVTRKQNCV
FT                 ALSTTEAELIALCNSVMDGLWFKKLLSDLNVMINHFYIHEDNQACISLIKN
FT                 PENNCRVKHRFEI"
XX
SQ   Sequence 4220 BP; 1648 A; 509 C; 872 G; 1191 T; 0 other;
     ggttatgggc ccagggcgcc gaagaacagg attgacaaga taaaaattcg gatagcggac        60
     tgagaggtta gtcacgccgc aaactctaag agaacgcaat ggcccgagac gtgaaatacg       120
     atcattacaa cgttgatccg ttaaatggaa acaattatga agcgtggaaa tttagagtaa       180
     atacaatatt agtagaacaa aatgtggagg aaatgataaa gacagagtat caagctgagg       240
     gatatgcaga tgataatagg agagaggaag caaagaaaaa ggataataaa tgtaagtcca       300
     taattgtgca atgcatcgag gatacgcaaa tagatatcgt tcggaacaag gatacggcat       360
     acgccatgtg gaaaagtctg aaagatatgt atgaaaagaa aggcttatct ggacaattat       420
     ttctcagaag aaagctaatg tcaatgaaaa tggagaaaaa taaaaagata gaagattttc       480
     ttttaaagtt cgatcgtgtt ttatgccagc taaagacatc tggtgctgag ataagagaag       540
     aagacacgat atgcatgtta cttctagcat taccaaagtc atatgaaacg gtagtaacag       600
     ttctggaaaa tgtacctatt gaaagtctca atatggattt tataaaagcg aaactgagaa       660
     cagaagctga gaagaagaaa gaagtcagtg gaagccgaga tgaaatggtc aaaccaattg       720
     cgttcgtatc aaagaattca ctgacatgtc acaattgtgg tgaagatgga catttcaaga       780
     gagattgtaa gaagccaatt caaaatcagc caagttataa tggaaatcga ggcaacgcat       840
     accgagggga aataaaccga ggtggcaggt accaaagagg aggaaatttt ggaggccgat       900
     ccagatacca aagaagagga cattaccact caaattcaag gtacaatcaa aatcaagata       960
     cacggaaagg gaactacgtc aaagctgagg atgccggtga tgacagcgtc tgctttatga      1020
     gcgatagaaa taagtctatt caagatagag gtaatgatac aattgttttt ctttatagat      1080
     tcggggtgta ccgaccactt gataaatgag aaacgtcact ttaatgactt aatgatgttg      1140
     aaaaatccta ttaaaatagc catcgccaaa gatgaaaatt acatagaggc tataggtatt      1200
     ggaaatgtta acgttcttag ttatgtaaac ggtaaaacag ttaaatgcgt tattaaaaat      1260
     gtattgtatg ttccaaattt aaggagaaat ttattatccg ttaagaaact agagatgtgc      1320
     atcataaaag taatatttga aaatggaaaa gtaaaattat ttagtggtca gaatttaatt      1380
     gggataggaa ttaggaataa tctgtatgaa atattcttta aagttgtacg aagtgaatgc      1440
     ttgaatatcg aagtagagga tgaaaagaca aaactgtggt acaaaagata cggtcatatg      1500
     agttacgcga atctaaagaa actaatagat tatgaaatgg ttgatggtat taaaaaactg      1560
     aatttgaata aagttgaatt ttgtgagtca tgcgtaaatg gaaagatgac aagattacct      1620
     tttaaaacaa ggaacagaag tagtagtctt ttagagatcg ttcattcaga tgtctgcggc      1680
     ccaataactc caatatcaca tgataataat aggtttttcg tgacattcat agatgactat      1740
     tcaaatttcg tttgtgttta tataattaaa aataaaaata aagtttttga ctgttttaga      1800
     gaatacgcac aaatggttca aacaaaattt aagaagagaa tatgtacttt aagatgtgac      1860
     aatggtaggg agtattattc taatgggttc aaaaattatt gtaaagagaa cggaacagtt      1920
     attgattata cagtgccata tacacctcaa cagaatggaa aagctgagcg ttttaatcga      1980
     agtttagtag aaaaggctag atctatgatg agcgattcaa atgtacctaa acatttttgg      2040
     aacgaagcaa ttagaacagc tgcatacatt ttaaatcgca gtccaagtat taatttagag      2100
     tcagtcactc ctgcggaatt atggtatgat aggagaccat atgtcacaaa tttaagagtt      2160
     tttggttcaa ttgcatattc acatgtacca gagcaattta gagataaatt tgatgagaaa      2220
     tctgaaaaat gtgtaatgat gggttacgca caaaacggtt atagattgtg gaatattgag      2280
     aaaagaaaaa ttcaaatttc tagaaatgta gtattcaata aaagtgcgtt ctattataaa      2340
     atgaataaga aggtagcaat tagtagtgaa gaagatgatg gaaccaaaga caaagaggcc      2400
     attgtagaaa acgaaactag ttgtgagagt gaggaagaat tggataggga taatttacaa      2460
     gaaacgatag aacaagtaga tgtaaaaaac agccaaagaa ataagaaagt tcctaaaaga      2520
     tttgatgatt atgaaatgta tatggctttt gacgctttat cttatataga acaagttcct      2580
     aaagattata gtgagttaaa cgatagagaa gatagagatg cgtggagaaa agcgatggat      2640
     agagaaatag agtctataaa taaaaataat acttggaagt cagttattaa gcctaatgat      2700
     gcagaaatat tggatactaa gtgagtatat agttataaat cactcgagac tgatcaatta      2760
     gataaataca aggcccgact agttgtaaga ggttttgctc aaaagaaaac atttgattat      2820
     gaggaattat actcacctgt tgctaaaatg actaccataa gaactctgtt atctatagga      2880
     aaccaatttg gatactattt caggcaatta gatgttagaa cggcgttttt aaatggagat      2940
     ttaaaggaag acatttatat atatccaccg aatggagtaa gacataaagc tggtcacgtg      3000
     tttaaactaa ataaatcact ttatggactg aaacagtcat ctaaatgttg gaacaataaa      3060
     attaatgatt ttctattaaa tttaggtttc aaaagatcaa ataacgacta ttgtttgtat      3120
     tctaaagttc acaagaatga agttgtttat ttgttattgt atgttgatga cataatattg      3180
     actggcccag acttagatca cattgagtat ttcaaaacaa aattaactaa tgaatttgat      3240
     ataaaagata aaggagaact caagaatttt ctcggattag aaatcgtcta tgataagatg      3300
     aaaggtattc taaaaataaa tcagaagaga tacattttag ggattttgaa aaagtttaat      3360
     tttgaaaatt gtaaaccatg tctgacaccc attgaaccaa gattgaaatt aaccatatct      3420
     gagagtaaga atgaaagaga taaaccaata aaagaaatga taggatgtct aatgtattta      3480
     atgttgggct cacgtccaga cttgagtttt gcaattaatt tctttagtag atatcaagat      3540
     aaatatccag atgaaatatg gaaccatctt aaaagagtat tgagatactt gaaaggaacg      3600
     acagacttaa gtttagttta tgtcagaaag gaaaaggaat atcctttaat atgttatgta      3660
     gattcagatt ggggaggtga tctacatgat cgcaagtcag tatccggata cctcataaag      3720
     gtttttggta atacagtatc ttgggtcact aggaagcaga actgtgttgc gttatctacg      3780
     actgaggcag aacttatagc attatgtaat tctgttatgg atggattatg gtttaagaaa      3840
     ttactttcag atttaaatgt aatgattaat cacttttata tacatgagga taaccaagcg      3900
     tgcatttctt taattaaaaa tccagaaaac aattgtagag tcaagcatag atttgaaata      3960
     taattttgtt tgcgaaaata taaagaaaaa cattataaag gttgaatata ccagcagtga      4020
     aacccaacaa gcagatatgt taacaaagag cttaccaaat ccgtcgtttt ataaaaattg      4080
     taaatctgta ggattgcaac tgtagagagg gtatagatta taagactaaa tataaggaaa      4140
     gttttggatg tactcaggta atattttgtt tatcggaaag tgtgactatt ttgaaattag      4200
     aacaaaacat taagagaggg                                                  4220
//
ID   Copia-9_LH-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   ADOQ01004008;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_LH_;
KW   Copia-9_LH-I; Copia-9_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-225
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01004008; Positions    3018    3242.
XX
SQ   Sequence 225 BP; 84 A; 37 C; 41 G; 63 T; 0 other;
     tgttgagata gtaatgtttt gtccaatata cttaagttgg tagtactaag tttgtaagta        60
     tgtaagttgg ctattctgcc gaagcttgct ctcttccatg aaaaccgaga agaagaacac       120
     gcgctctaag actgaaatgt gaaatgttcc gaaataaagc aaatctatat gaaaagaaac       180
     aaaattctga tttccctgaa taaggaaatt acccacaaaa caaca                       225
//
ID   Copia-9_LMi-I repbase;    DNA;    INV; 4309 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4309
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3089-3089 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           224..4267
FT                 /product="Copia-9_LMi-I_1p"
FT                 /translation="MTENRHTIEKLSGVNYASWSYQMKMILIDCDLWTVIE
FT                 PGETEPSEGASAADKKGYISRQGKALAKVVLSICDEQQMHIRNLSNPKAVW
FT                 EELQKLYAPRDSKFRTVQLRRKLYSLKIKNCESMENYLGLINKTVADLANI
FT                 GDEIEDGDLAMTILCGLSEEWDAVVTALCNLPDNDFKCATIKRRLLAEDAR
FT                 RQEYNEDKYSAMSLKANVGSQKHRKLRLSERDGRKEKRRKKQRKKVVLFVT
FT                 IVTKSVTYPRNCPEKGKLKKAQKKLGAISMSAACGTVTLDGDNWIVDSGAT
FT                 HHMAPNENYFSVVDKNIEIVTLADGRQTEAVGKGTVRAKIINNEGLADEFI
FT                 ANNMLFVPEIDYAILSVRQLTENDKKVIFDKEGCKIYDEFGRLIIKTXQKG
FT                 RLYYINTKPCADDRSINMLKNDEREKSLDLDLWHCRMMHVSKRTINDMISK
FT                 EAVRGLDCEKGEINPCDDCLAGKSARKPFPKTLSNDSKERTTTLELVHSDL
FT                 MGPIDVPSFGGNRYLMSIVDDASRYIFVRFLKNKDEAFEEFKKWKIQTERQ
FT                 TGKRLKRIRTDNGLEFCSRKWSQLCDAEGIWHEVTMSYTPQQNGIAERLNR
FT                 TLMDMVRSQLIGSDLPKSSWAELMYTAAYIRNRVTNSHNNEKTPYELWTGR
FT                 KPSVRHLRVIGCEVFVHVPRQKCRSKLSTRAEKGILVGYSLYGRGYRIWVP
FT                 ETKQVIESRDCTFKEFLSGKWSTENKKQNKFIDLYNEEELLFPNTSNGGDK
FT                 QSEKEDSNTEEEFYGFSDQEEKLEETGCNQDLMEHAEASQSAYRPRKEVTK
FT                 GKMNLSKCHPMTLRSKEKAHTEEAQINAIQGRNSDEPLSYQEAVNSDEAEE
FT                 WKVAMNEEINSLEHHEAWKLSVLPPGVIPIKNRWVFKKKIVGGKQIFKARL
FT                 VAKGFTQVEGVDFNEIYAPVSNFETIRLLIAASVEKNWHIDQYDVKSAYLH
FT                 SKLKEDVYMLQPEGFIKKGQENLVCKLNKSIYGLKQSGRCWNDHLNRSLEK
FT                 LGFIRNDIDPCVYKMNAKEGNAILSVYVDDMLAFAQNEKIRQKVKTLLESC
FT                 FEIKHMGMVSHMLGVKFDYNKDGTICLSQKEYISQLLDRFGLQNAKGAKTP
FT                 MELKLNFLDEKSDEEAKNLPYRELIGGLLYLSQRTQPDIAFSVAKLSQYCS
FT                 KFNVTHWNAAKRVLRYVKETADYKLKYYPTGQILEAFADADWATCTEDRKS
FT                 VTGYVILLAGSPVYWKSTKQTAVALSTMEAEYVSVAACAREVVWMRELLKS
FT                 LDLKELIGKSTPVWCDNQAAIVHSKNYIDKSRTKHIAIKHHFIREKVMDGT
FT                 VDIRYISTDNNQADLLTKPLCQNIHERHCKMMLHSK"
XX
SQ   Sequence 4309 BP; 1543 A; 672 C; 982 G; 1110 T; 2 other;
     atggttatgg gcccaggtgt gctagctaaa aaacaagaaa aatagataac cgcgttagtg        60
     tcaattatcc gatgaaaaaa aaaaaatctc ccgtgcggcg ccgacgaaat atctgccgac       120
     tatttttcgt gcgacgcatt tgagaaacgt taattgacgc cgagtttgtg tttcgtgaat       180
     cttacggaaa acaaccgtaa aacggtaatt ggaatagaga aagatgacgg agaacagaca       240
     cactatcgag aaattaagtg gagtgaatta cgcttcctgg tcgtatcaaa tgaaaatgat       300
     tctcatagat tgcgacttgt ggactgtaat tgagcctggt gagacggaac ccagtgaagg       360
     tgcatcggca gccgataaaa aggggtatat atcacgtcaa ggtaaggcac tagcaaaagt       420
     tgtactttcc atatgtgatg agcagcaaat gcatatacga aacttgtcaa atccaaaagc       480
     agtatgggaa gaacttcaga aattatacgc tccacgagac agcaaatttc gtactgtgca       540
     actgagacgg aagttatatt cgttaaagat caagaattgt gaatccatgg aaaattatct       600
     agggcttata aacaaaactg tagctgatct agcgaatata ggtgacgaaa ttgaagatgg       660
     ggatttagca atgactattc tgtgtggact ttcggaagaa tgggatgcag tagttacagc       720
     tctgtgcaat ttgccagata atgattttaa gtgtgctaca attaaaaggc gkctacttgc       780
     tgaagatgct agacgtcagg aatataatga agataaatat tctgcaatgt ctctgaaagc       840
     taatgttggt agtcagaagc accgaaaact gcgactttcg gaacgtgacg gaagaaaaga       900
     aaaacgaaga aagaagcaac gcaaaaaggt agttttgttt gttacaattg tcacaaagtc       960
     ggtcacatat cccagaaact gtcctgaaaa gggaaaatta aaaaaggcac aaaagaaact      1020
     aggcgctatt agtatgagtg ctgcctgtgg tacagttaca ttggatggcg ataattggat      1080
     agtggattcc ggcgcaactc atcacatggc tccaaatgaa aattattttt cagttgttga      1140
     taaaaatatt gaaattgtaa ctctagctga tggccgacaa acagaagctg ttgggaaagg      1200
     tacggtaagg gcaaagataa ttaacaacga aggtttggct gatgaattca tcgctaataa      1260
     catgctgttt gtgcctgaga tcgactatgc aatattgtct gtgaggcagc tcactgaaaa      1320
     cgacaaaaag gtgatttttg ataaagaagg ttgcaagatt tacgatgaat ttggaagatt      1380
     gatcattaag actcawcaga aaggtcgttt gtattacata aatacgaaac cgtgcgcaga      1440
     tgacagatca ataaacatgt tgaaaaatga cgaacgtgaa aaatcacttg accttgacct      1500
     atggcattgt cggatgatgc atgtcagcaa gcgtactata aacgacatga taagtaagga      1560
     agcagtacgg ggattagact gtgaaaaagg cgaaataaac ccgtgtgatg actgtttggc      1620
     ggggaaatcg gcgcggaaac catttccaaa aacgctatca aatgattcga aagaacggac      1680
     aaccacttta gaactcgttc acagtgatct catgggacct attgacgttc caagttttgg      1740
     aggcaataga tatttaatga gtatagtcga tgatgcaagc agatacatat ttgtgcgttt      1800
     cttaaaaaat aaggatgaag catttgaaga attcaagaaa tggaagatac aaactgaaag      1860
     acaaaccgga aaacgattaa agagaattcg cacggacaat ggcctagaat tctgttcacg      1920
     caaatggtca cagctctgtg atgctgaagg aatttggcat gaagtaacaa tgagctacac      1980
     gcctcagcaa aatggtatag ctgaacgcct caacagaaca ttaatggaca tggtaaggtc      2040
     acagctgata ggaagtgatt taccaaagag ttcttgggct gagctaatgt acacagcagc      2100
     atacataaga aatcgagtta caaatagcca caacaacgaa aaaacgccct atgaattgtg      2160
     gacaggtaga aagccaagtg tgagacattt acgcgtgata ggatgcgaag tttttgttca      2220
     tgtacccaga caaaaatgtc gatctaaatt atccactagg gcagaaaaag gcattcttgt      2280
     aggatattct ctgtatggcc gtggatacag gatctgggtg ccagaaacaa aacaggttat      2340
     tgaatccaga gactgtacat tcaaagaatt tttgagtggc aagtggtcaa ctgaaaataa      2400
     gaaacagaac aaatttattg atttgtacaa tgaagaagaa ttattgtttc caaataccag      2460
     taatggtggt gacaaacaaa gtgaaaaaga agattcaaac actgaagagg aattttatgg      2520
     tttctctgat caggaagaaa aattggaaga gactggatgt aatcaggatc ttatggaaca      2580
     tgctgaagct tcacaaagtg catacagacc aagaaaggaa gtaacaaaag ggaaaatgaa      2640
     tttaagtaaa tgtcatccaa tgacacttcg ttcaaaagag aaggcacaca ctgaagaagc      2700
     acaaataaat gccatacaag gaaggaacag tgatgaacct ttatcatatc aggaagcagt      2760
     caattctgat gaggcagagg aatggaaagt tgcaatgaat gaagaaatta attctttgga      2820
     acatcatgag gcttggaaac tgtctgtgct accacctggt gtaattccta taaagaacag      2880
     atgggttttt aaaaagaaga tagttggtgg gaagcagatt tttaaagctc gtttagttgc      2940
     aaaaggattt actcaagtag aaggtgtaga ttttaatgag atttatgctc ctgtttcaaa      3000
     ttttgaaact attcgtttac tgatagcagc cagtgttgag aaaaattggc acattgatca      3060
     gtatgatgtg aagagtgcat atctgcatag taaattaaag gaagatgtat atatgctcca      3120
     gccagaaggt ttcatcaaga agggccaaga aaatttggtt tgtaaattga acaagtcaat      3180
     atatggactg aaacaaagtg gtagatgttg gaatgatcat ttgaatagat ctctagaaaa      3240
     actgggattt attagaaatg acatagatcc ttgtgtgtac aagatgaatg caaaggaagg      3300
     aaatgctatt ttgtctgtat atgtagatga catgcttgct tttgcacaaa atgaaaagat      3360
     aaggcaaaag gtaaagactc ttttagaaag ttgttttgaa atcaagcaca tgggcatggt      3420
     ttcacacatg ttaggagtga aatttgatta caacaaagat ggaacaattt gtctttctca      3480
     aaaggagtac attagtcaac ttcttgacag attcggactt cagaatgcta agggagctaa      3540
     gaccccaatg gaactgaaac tgaattttct tgatgagaag tctgatgaag aagctaaaaa      3600
     tctgccttat cgtgagctta ttggtgggct tctttacctt tcacagagaa cacaaccaga      3660
     catagctttc tctgtggcaa agctatccca gtattgttca aaatttaatg taacccactg      3720
     gaatgcagct aaaagagtgc tgagatatgt aaaagaaaca gcagattata aactcaaata      3780
     ttaccccact ggtcaaatac tcgaagcatt tgctgatgct gattgggcta cttgtacaga      3840
     agatcgcaaa agtgttacag gatatgtaat attactagca ggatctcctg tgtactggaa      3900
     gagtacgaaa caaactgcag ttgcattgag cacaatggaa gcagaatatg tgtcagttgc      3960
     agcctgtgca agagaagtgg tatggatgag agaactacta aagagccttg acctcaaaga      4020
     actgattgga aaatcaacgc ctgtgtggtg cgataatcaa gctgcaattg tacattccaa      4080
     gaattacatt gataaatcaa gaacaaaaca tattgccata aagcatcatt tcattagaga      4140
     aaaagtgatg gatggtacag ttgacatcag atacatttca acagataata atcaagcaga      4200
     cttgttgaca aaacccttgt gtcaaaatat tcatgagcgt cattgcaaga tgatgttaca      4260
     ttcaaaatga tatgtgtggt tcttttagat atcatttcga gggggggaa                  4309
//
ID   Copia-9_LMi-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.11, Created)
DT   20-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Copia-9_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-207
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3090-3090 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 207 BP; 54 A; 24 C; 35 G; 94 T; 0 other;
     tgttaagtga ttagcaagtg ggcaaaggtt attatattta ttctttttat ttgtgttaat        60
     tatctttggt gtttttttta aaaaagacga tcgtgtgtta tcttaatgct cgtctgttac       120
     tattgaaata gtgtatgcag ttttttcttt ctctatcaat aaatataaat cgtgtgatac       180
     ggcagttttt tttattccac tgcaaca                                           207
//
ID   Copia-9_SI-I repbase;    DNA;    INV; 4381 BP.
XX
AC   AEAQ01030799;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_SI_;
KW   Copia-9_SI-LTR; Copia-9_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4381
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030799; Positions    4821     441.
XX
CC   Positions [1624-2142] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..2598
FT                 /product="Copia-9_SI-I_1p"
FT                 /translation="MENWNLTSVEPLDDKNYFLWSEKIEGILRAKKLWKKV
FT                 INVKPPEKPVEGTENYETKYKSWNEWDDDNYAARAVIINTMSSSQLLKYSR
FT                 EKSADKLWSLIKNNMAAETDQLKAKFLSELSNLRMYKDESVDAYVNRAEAL
FT                 RNQCVQLGKNIEDYELRMYILSGLRSEFDQNVRVLDTQRELTINDIRYALK
FT                 QEESRKNKRKEERTSRDEYVRRARDKPKFDVACYNCGMKGHVSSECRNKQK
FT                 CFNCQGLNHISADCKEPKRIASRGRGTRGNSRGRGFGRRRGQSEVTLKTAD
FT                 ESVLTVRDSAHVSMSLCKNGESKVTKDNSNDCIWILDSGATSHMASNEVMF
FT                 GYLEDEKRDIRLADKEGKKLISDGKGEIVLKQDSVNSRIRLENVLCVPDIN
FT                 VNLLSVAKITDHGYNVKFDKHGAIVYRDKDEIKMRAVREDNAYYVKTTTMN
FT                 DEKAATITDIDIWHKRLGHINKRIIEEMKREDLVIGMKETSKEIRQCEPCV
FT                 EGKICRKAHPRLPGRRTKKIMELWHTDLIGPIKPSSRGGKRYIMTTIDDYS
FT                 RVIFIDFLREKGEAAKRLKELIMLKENQTELKLKAIRSDNGGEFIAEELEN
FT                 WFKSKGIKHEFSPARTPQCNGVVERANKSIIEMTRTMMMDSKLSMDFWAEA
FT                 ASTAVYIKNRSKSTVHGKTPYEMWNGWKPNINFMRRFGCMAYVLDKEKQRR
FT                 KFDSKSVKGIFIGYASNNTYRVYVPETGKVKADCDVKFDETRNGCELINRK
FT                 ADKEEKNEEKLIIMGINPGNNEEWMENRMEIEEDEEDRRTESSVYEDATQE
FT                 DLGDDTHENLENGDESEDENKLMMEGM"
FT   CDS           2685..4382
FT                 /product="Copia-9_SI-I_2p"
FT                 /translation="MELRRVERLEEQERNIGQNDVRRSERIKNQQSALLVT
FT                 DDEIPKNVEKAMESSDWKFWKDAIKEELTSLDKHKVWDVVPRPKDKKVIKC
FT                 KWIFNIKEDPNTEQRRYKARLVALGCGQRPGVDYRETFAPVVRTETLRILF
FT                 SISAQERRKIKIYDVRTAFLHGTLKEEIFMEMPDGLRSNKEQVCKLKKSIY
FT                 GLKQAGRCWYECLTDVMQNCGMKQSVEDPCLFYVKKENNYLYCGIHVDDMV
FT                 IISNREEFEKEYMDKIKRYIDIKDLGEANTVLGMQIEQEEGRIYVHQRKYI
FT                 QNLLQLYGMEECNTVGSPMDVNVIMEECSNSEQADVHIYQELMGRLMYLGV
FT                 YTRPDISFTLSNLSQFNNDPRMMHMTALKRILRYLRGTIDYRLEFGEKAVE
FT                 GLIECEADASWDRTKDAKSYSGILVYRNGDLIHWKSKKQSKVALSSTESEL
FT                 EAMLEGTKEVVWTARLLREIGMSNGSQTELRCDNLNAVRLANGGTFKTKSK
FT                 LLNRRCHYIKEIVKEENVRVKHVPNEVMTADCLTKPLSKPKLLKACEEVHE
FT                 RTRMIKPRGRLWDIVFYHL"
XX
SQ   Sequence 4381 BP; 1680 A; 595 C; 1151 G; 955 T; 0 other;
     caattggtag cagagcgtgg ttgatgcaaa aagaaggttg gtgagtgtaa ttgagagacc        60
     gagtgttgag agtttgtgcg tgaacgacga gagagaagag tccgattcaa gatggagaat       120
     tggaatctca caagtgtgga accgcttgac gacaagaact atttcctatg gagcgaaaag       180
     atagaaggaa tcctgagagc gaaaaagttg tggaaaaaag ttattaatgt gaagccacct       240
     gaaaaacccg tagaaggtac ggaaaattat gagacgaaat acaagtcatg gaacgaatgg       300
     gacgacgaca attacgcagc ccgtgctgtg ataataaata caatgagtag ttcacaattg       360
     ctgaaataca gtcgtgaaaa aagtgcggac aagctttgga gcttgatcaa gaacaacatg       420
     gcagcggaaa ccgatcaatt gaaggccaaa ttcctcagcg aactgtcgaa cctgcgaatg       480
     tataaagatg agagtgtcga cgcatatgtg aacagagcgg aggcgctgcg aaatcagtgt       540
     gtgcaacttg gaaaaaatat agaagactat gaactgagaa tgtatatact cagcggacta       600
     agatccgagt ttgatcaaaa tgttcgagtg ctggatacac agagggagct gacgatcaat       660
     gatataagat acgcactgaa acaagaagaa tcccggaaga ataagcgaaa agaagagagg       720
     acatcgaggg atgaatatgt gagaagagca agagataaac caaaattcga cgttgcgtgc       780
     tataattgcg gaatgaaagg ccatgtatcg agtgagtgta gaaacaagca aaaatgcttc       840
     aactgccagg gattaaacca tatttcggcc gactgtaaag aaccgaagag aatcgcatca       900
     cgaggaagag gaacaagagg aaactcgaga ggaagaggat tcggcagaag acgcgggcaa       960
     agtgaggtta cgctgaagac agcggatgag tcggtactga cagtaagaga cagcgcgcat      1020
     gtgagtatgt cgttatgcaa aaatggagaa agcaaggtaa cgaaagataa ttctaacgat      1080
     tgcatatgga tattagattc aggcgcgaca agccatatgg ccagtaatga ggttatgttt      1140
     gggtatctag aagacgaaaa aagagatatt cggttagcag ataaagaagg aaaaaaattg      1200
     atctctgacg ggaagggaga aatagtatta aaacaagatt cagtcaacag tagaatccga      1260
     ttagaaaatg tgttatgcgt tcctgatatt aatgtaaatc tattgtctgt ggcaaagatt      1320
     actgatcacg gatataatgt gaaattcgat aaacatggag ctatcgttta cagagataag      1380
     gacgagataa agatgagagc cgtgcgtgag gacaatgcgt actacgtaaa aactacaaca      1440
     atgaatgacg aaaaagcagc gacaattaca gacatagaca tttggcacaa acgacttgga      1500
     cacatcaaca agaggatcat cgaagaaatg aagagagaag accttgtcat tggaatgaag      1560
     gaaaccagta aagagataag acaatgtgaa ccatgcgtgg aaggaaagat atgtcgaaag      1620
     gcacatccta gattgccagg gagacgaaca aagaaaataa tggaactgtg gcacacagat      1680
     ttgattggtc ctataaaacc atcgtcacga ggaggtaaga gatacataat gacgacaata      1740
     gatgattact caagagtaat ttttattgat tttttgagag aaaagggaga agcggcaaaa      1800
     aggttgaagg aattgataat gttgaaggaa aatcaaactg aattaaaatt gaaagcaatt      1860
     cgatcagaca atggaggtga attcatagcg gaagagctag aaaactggtt caaatcgaaa      1920
     ggaatcaaac atgaatttag cccagcgaga acaccgcagt gcaacggggt agtggaaagg      1980
     gcaaacaaat caattattga aatgacgagg acgatgatga tggattcgaa actgtcaatg      2040
     gatttttggg ctgaggcggc gagtacagca gtatacatca agaataggag caagtcaacg      2100
     gttcatggaa aaacaccgta tgaaatgtgg aacggttgga aaccaaatat aaattttatg      2160
     agaaggtttg gctgcatggc atatgtcctg gataaggaaa aacaaagaag gaaatttgat      2220
     tcaaagtctg tgaaaggaat atttataggc tatgcaagca ataatacata tagggtgtat      2280
     gttccggaaa caggaaaggt gaaagcggat tgcgatgtta aattcgacga gaccaggaat      2340
     ggatgtgagt tgatcaatag aaaggcagac aaagaggaaa aaaatgaaga aaaactgata      2400
     atcatgggaa tcaatcccgg aaacaacgaa gaatggatgg aaaatcgaat ggaaatagaa      2460
     gaagatgaag aggataggcg aactgagagc agtgtttacg aggatgcaac acaggaagat      2520
     cttggagatg atacacatga aaatctagag aatggagacg agagcgaaga tgaaaacaaa      2580
     ttgatgatgg aaggaatgtg agaaatggag tgatagaaga aattcaagaa caaccaattg      2640
     agattagaag tagaggaaga ccgaagggaa ccactaaagc tgtaatggaa ttacgaagag      2700
     ttgagagatt agaagagcaa gaaagaaata taggacaaaa cgacgttaga agatctgaaa      2760
     ggattaaaaa tcaacagtca gcattactgg tgacagacga cgaaattccc aagaatgttg      2820
     agaaagcgat ggagtcgagt gattggaaat tttggaaaga tgccataaaa gaagagctga      2880
     catctctaga taaacataaa gtttgggatg ttgtgccgag gccaaaggac aagaaagtta      2940
     taaagtgcaa atggattttc aacattaaag aagacccgaa tacggaacaa cggagataca      3000
     aggctagatt agtggcactt ggatgcggac aacgaccagg agtggattat agagaaacct      3060
     ttgccccggt ggtaagaacg gaaacattaa gaatactatt cagtataagt gctcaagaaa      3120
     ggagaaaaat aaaaatttat gatgtgagaa cagcgtttct acatggaaca ttaaaggaag      3180
     aaatatttat ggaaatgcca gatggattac gaagtaacaa agagcaagta tgtaaattga      3240
     agaagagtat ttatggactc aagcaggccg gaagatgctg gtatgaatgt ttgacagatg      3300
     tgatgcagaa ttgtggaatg aaacaatcgg tggaagatcc ttgtttattt tatgtaaaaa      3360
     aggagaataa ttacctgtat tgtggaatac atgtcgatga tatggtgatt atttcgaata      3420
     gagaagaatt tgaaaaggag tacatggata agatcaaacg gtacattgat attaaagatc      3480
     tcggagaagc gaatacagtt cttggaatgc aaatagaaca agaggaagga cgaatatatg      3540
     tgcatcaaag gaagtatatt caaaatttac tgcagttata cggaatggaa gagtgtaaca      3600
     ctgtcggatc accaatggat gtaaatgtaa ttatggaaga atgtagtaac agtgaacaag      3660
     ctgatgttca tatttatcag gaattaatgg gacgtcttat gtacttggga gtgtacacta      3720
     gaccagatat atcgttcaca ctgagtaacc tgtcgcaatt taataatgat ccaaggatga      3780
     tgcatatgac agcactgaag aggatacttc gttatttgag gggaaccatt gattaccgcc      3840
     tggaattcgg agaaaaggct gtggaaggac taattgaatg tgaagctgat gcatcgtggg      3900
     ataggacgaa ggatgctaaa tcatattcag gaatattggt gtatagaaac ggagacttga      3960
     tacactggaa gagcaaaaaa caatcgaagg ttgcactttc ttcgacggag agcgagttgg      4020
     aagcgatgct ggaaggaaca aaggaagtcg tatggactgc taggctacta cgtgaaattg      4080
     ggatgtcgaa tggatcgcag acggaactga gatgcgacaa tttaaatgcc gttagattgg      4140
     caaatggagg aacatttaaa acaaaatcca aactattgaa cagaagatgt cattatatca      4200
     aggagattgt aaaggaagaa aatgttcgtg tgaagcatgt accaaatgaa gttatgactg      4260
     cggattgctt gacgaaacca ttgagtaaac caaaactgtt gaaagcatgt gaggaagttc      4320
     atgagcgtac ccgaatgata aaaccaaggg gcagattgtg ggatattgtt ttttatcatc      4380
     t                                                                      4381
//
ID   Copia-9_SI-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   AEAQ01030799;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia-9_SI_;
KW   Copia-9_SI-I; Copia-9_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-298
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030799; Positions     440     143.
XX
SQ   Sequence 298 BP; 83 A; 47 C; 63 G; 105 T; 0 other;
     tgattaacta tctttatatt gttttttgag tctattcatg taggttgagt cagttcacca        60
     ggaagtctgt taatgtctaa ctatgttttt ggaatgggtt cagtagatgg cggtgtagga       120
     tggagtgtcg gagtgtactg aaaatttttg taaccacgag ggggtcgttc attcgtccat       180
     gaaacttgta acggaaaaca cgcgatatta cttcatgttc acaaatctca atacatatat       240
     gttttatatc agcaatagaa ggaagaattt tattaatcat tccctgcctt cgatccca         298
//
ID   COPIA1-I_AG repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   28-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   COPIA1-I_AG is an internal portion of the COPIA1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA1-I_AG; COPIA1-LTR_AG; COPIA1_AG; Copia clade;
KW   reverse transcriptase.
XX
NM   COPIA1-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4129
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "COPIA1_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 49-49 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA1_AG is a young family of Copia-like LTR retrotransposons.
CC   COPIA1-I_AG, an internal portion of COPIA1_AG is flanked by 99%
CC   identical COPIA1-LTR_AG LTRs. The COPIA1-I_AG consensus sequence
CC   was reconstructed based on multiple alignment of 4 copies.
CC   The consensus sequence encodes the 1323-aa COPIA1-I_AGp protein
CC   (positions 151-4119).
XX
FH   Key           Location/Qualifiers
FT   CDS           151..4119
FT                 /product="COPIA1-I_AGp"
FT                 /translation="MSESHVTIEKLNDQNYAIWKFKMELLLAREKVLTVVK
FT                 DSKPASPDAAWIANDERARALIGLSLDDSQLIHVMQTSSSKDMWDALKGYH
FT                 ERSSLSSKIHVMRKMFATKMTEGGDISNHLKELCSLRLRLIALGEEMKDPS
FT                 FVALMLSSLPKSFDGLIVALESRPDEDLTVDYVKGKLLDEGRRRADGADED
FT                 KALLSGGKNXTKFWKDRKLTTNKEKQCHYCKKNGHIRKDCRKWAADKRSKL
FT                 DGESVNVANEDNREEVCLFIGEXNETGPWCFDSGATSHMTNDTSILKLIDK
FT                 SKQSSISLANGDSIKSAGVGXCKLFSMDGNGKRKKVSLDXVCHVPSLTTNL
FT                 LSVSKITDNGFEXXFDRXGCRVLKGKQVLLIGERKGGLYYLKQTEQAMLVD
FT                 KNHEASCIHLWHRRFGHRDIEAIMKIARNNLGSGLNINRCHVKSICGSCCE
FT                 GKMSRDPFPNSSSSRTSGVGELIHTDLGGPFEVSTARGSRYFMTMVDDFSR
FT                 YTIIYLXQNKCETENRIREYCXMMKTQFGHYPKVIRSDGGGEYRSNSLKEF
FT                 FVDHGIVHQQTAPYSPQQNGVAERKNRYLVEMMRCMLAESNMDKVFWGEAI
FT                 TTANYLQNRLPSSLLESTPYEMWHGKNPSYEHLRVFGSEAFVHIPKEKRRK
FT                 LDKKAEKLVFVGYADNQKAYRFVNLETKTITISRDAKFLEQCEIEKIGTKP
FT                 KPTTSGGVVVLPLGSTPSLCRAEETTTRENIVQMEASAESSCIRESNMNDT
FT                 VDXLDVTPYNSASDGELSDEPGAIEMHQSVRRSXRTTKGIAPVRFREESYM
FT                 AGSSEQNEEPRNLKEVFVCAAREKWISAMENELKSHEENGTWDALVELPAG
FT                 RKVVGCRWIFKLKRNAAGQVIKHKARLVAQGYSQQFGEDYDQVFAPVTSHT
FT                 TFRLMLAIASKTQMKLRHLDIKTAYLYGDLDQELFMRQPPGYEXKGKEHLV
FT                 CRLKKSIYGLKQSARCWNQKLHGVLLEIGFQQSAADQCLYIKTEDGKRVYI
FT                 LVYVDDMIVGCVDETLIDSVYHALTEHFEMTDLGPVSYFLGMEVKXEKGNY
FT                 SVSLEGYIEKLIRKFGLSEAKTAKTPMDEGFLKQQDSSSILKDSTQYRSLV
FT                 GALLYISVCTRPDIAVSTGILGRNVSNPTESCWVAAKRVVRYLKATKHFKL
FT                 TFNKAGSDLIGYSDADWAGDTITRKSTSGYVFFYASGAVSWASRKQTSIAL
FT                 SSMESEYISLSEATQEQMWLTRLMKDLGEHIENPVKIFEDNQSCICFVNSD
FT                 RTNRRSKHIETKEHFVKQQCESRKMMLEYCPTEEMVADILTKPLGATKQRK
FT                 FTEMLGLHGTR"
XX
SQ   Sequence 4129 BP; 1357 A; 731 C; 960 G; 1064 T; 17 other;
     ggttatgggc ccagaagtac tgtcgaacaa gtgttaagtt tgtgttatat tgaagtaata        60
     atctatcgaa aattttaatc ttgaagaaat actgaaaact tatcgaaaat tttaatcttg       120
     aagaaacact gaaaacttaa atctagaaac atgtctgaat cacacgtcac cattgaaaaa       180
     ttaaacgatc aaaattacgc aatatggaaa ttcaagatgg aacttttgtt agcaagggaa       240
     aaggtgctga ctgtcgtgaa agattcgaaa ccagcaagtc ccgacgctgc atggattgcg       300
     aatgatgaac gtgctagggc actgatcggt ctgtcgttgg acgacagcca actcatccat       360
     gtcatgcaaa cgagttcatc gaaagatatg tgggatgccc taaaaggcta tcatgagcgt       420
     tcatctttgt ccagcaaaat acacgtcatg cgaaaaatgt ttgccacaaa aatgactgaa       480
     ggtggagaca tttctaacca tctcaaagaa ctatgttctc tgcgacttcg tttaattgcg       540
     ctgggagaag aaatgaaaga tccatccttt gtcgcgttaa tgttgtccag tttgccaaaa       600
     tcctttgatg gtttgatcgt ggctttggaa agtaggcctg atgaagatct tacggtggat       660
     tatgtaaaag gcaaattgtt ggatgaagga agacgtcgag cagatggtgc agatgaagat       720
     aaagcgttac tatctggagg aaagaayawc acgaaatttt ggaaggacag gaaactaaca       780
     accaacaagg aaaaacagtg ccattattgc aagaagaatg ggcacataag aaaagactgt       840
     agaaaatggg ctgcagacaa aagaagtaaa ctagatggtg aaagcgtcaa cgttgctaat       900
     gaagacaatc gagaggaagt atgtttgttc attggagaar gaaacgaaac tggaccatgg       960
     tgtttcgatt ctggtgcaac ttctcatatg acgaacgata cgtctatttt gaaattaata      1020
     gataaatcga agcaatcctc gatttcatta gcgaacggag attccatcaa gtcagctggt      1080
     gtcggaarct gcaaattgtt ttccatggat ggaaacggaa aacgcaagaa agtttccttg      1140
     gacaakgtgt gtcatgtacc atctttgacg acaaacctat tatctgtaag taaaattacc      1200
     gataatggat tcgaartgyt tttcgatagg twtggatgtc gtgtcctgaa aggaaaacaa      1260
     gtattgctga ttggtgaacg taaaggtggt ctgtattatc taaaacagac tgaacaagcc      1320
     atgttggtag ataaaaacca tgaagcttcc tgtatacacc tatggcatcg tcgatttggc      1380
     catcgtgaca tagaagccat aatgaagatt gcgcggaaca atttgggaag cggcttgaac      1440
     atcaaccgat gtcatgtgaa atccatttgt ggatcatgct gtgaagggaa gatgagccgt      1500
     gatcctttcc caaattcttc atcttcaagg acatctggtg ttggcgaact gatacatacg      1560
     gacttgggag gaccgtttga agtatcaaca gcccgaggaa gccgatattt tatgactatg      1620
     gttgatgatt ttagtcggta tacaattatc tacctgktgc aaaacaagtg tgagacagaa      1680
     aaccggatca gagaatattg crccatgatg aaaacacagt ttggacacta tccgaaagtc      1740
     atcagatcgg atggtggtgg tgaatacagg agcaattctt taaaggaatt ttttgtagat      1800
     cacggsatcg tgcatcaaca aactgcccca tattctccac aacaaaacgg cgtggctgaa      1860
     cgtaagaacc ggtacctcgt tgaaatgatg agatgcatgt tggcagaatc gaacatggac      1920
     aaggtgttct ggggtgaagc gatcaccact gccaattatt tacaaaatcg cttgccatcc      1980
     tccttactgg aatcgacacc ttacgaaatg tggcacggaa agaatccttc gtatgaacat      2040
     cttcgagtat ttggttcaga agctttcgta cacattccta aagaaaaacg gcgtaagttg      2100
     gataaaaagg ctgaaaagtt ggtattcgtc ggatacgcgg acaatcagaa ggcctatcga      2160
     ttcgtaaacc tggagacgaa aacaattacc attagtcgtg acgcaaaatt tttagaacaa      2220
     tgcgagattg agaaaattgg aacaaaaccg aaaccaacga catcaggagg agtagtggta      2280
     ctgccacttg gatcaactcc ttcattatgt cgcgcagaag aaactaccac gagagaaaac      2340
     atcgttcaaa tggaggcttc tgctgaatcc tcctgcatta gggaatcgaa catgaacgat      2400
     acygtagatg awcttgatgt tacaccatac aacagtgcat ctgatggcga actatcagat      2460
     gaaccagggg ctattgaaat gcatcaaagt gtacgtaggt ccaygcgaac aacaaaaggc      2520
     atcgcacctg ttcgattcag ggaggaaagt tatatggcgg gatcttctga acaaaacgaa      2580
     gaacccagaa atttgaaaga agttttygtc tgtgcagcgc gcgaaaaatg gatatcggca      2640
     atggaaaatg aactgaaatc acacgaagaa aacggaacat gggatgcatt ggtagagcta      2700
     cctgctggca gaaaggttgt tggttgccgc tggattttta agttgaaaag aaatgcagct      2760
     ggacaagtaa tcaaacacaa agctcgtcta gtggcgcaag gctattccca gcaatttggc      2820
     gaagactatg atcaagtatt tgctccggtc acaagccata caacatttcg tttgatgctc      2880
     gctatagctt ctaaaacaca gatgaaatta cggcatttag atattaaaac ggcctattta      2940
     tatggtgatc tagatcagga gctttttatg cgacaaccac ctggatacga gayaaaaggc      3000
     aaagagcatt tggtttgtcg attgaaaaag agtatttatg gtctgaaaca atcagctcga      3060
     tgttggaacc agaaactgca cggtgttctg ctagagattg gcttccaaca aagtgctgct      3120
     gatcagtgtc tgtacattaa aactgaagat ggaaaaagag tctacatttt agtgtacgtg      3180
     gatgatatga tagtcggttg tgtggacgag actctcattg attctgtgta tcacgcttta      3240
     accgaacatt tcgaaatgac ggacctggga ccagttagtt actttctggg aatggaggtt      3300
     aaatrtgaaa aaggtaacta cagcgttagc ctcgaaggtt acattgaaaa attgattcgt      3360
     aagttcggat tgagcgaagc aaaaactgcg aaaacaccga tggatgaagg atttttgaag      3420
     cagcaagact caagctctat tttgaaagac tctactcaat atagaagtct agttggtgct      3480
     cttctataca tatcggtgtg tacgcgacca gatattgctg taagtacggg aatacttggt      3540
     cgtaatgtta gtaatcctac tgaatcatgc tgggttgcgg ctaagcgtgt tgtaagatat      3600
     ttaaaagcaa ctaaacattt taagctcact ttcaacaaag ctggtagcga tttgattggt      3660
     tattctgatg ctgactgggc aggtgatact ataacaagaa aatcgacttc cggatatgtg      3720
     tttttctatg ctagtggagc tgtgtcatgg gccagtcgca aacaaaccag cattgcatta      3780
     tcatcgatgg aatcagaata tatttcctta agtgaagcta ctcaagaaca aatgtggctt      3840
     actcgattga tgaaagactt aggagaacat attgaaaacc ccgttaaaat ctttgaggat      3900
     aaccagagtt gcatttgttt cgtcaactct gatagaacca atcgtcgatc gaaacacatt      3960
     gaaacaaaag aacactttgt caaacaacag tgtgaatcta gaaaaatgat gcttgaatat      4020
     tgtcccacgg aagagatggt tgcggacatt ctaacgaaac cactaggagc aacaaaacaa      4080
     agaaaattta cggagatgtt agggcttcat ggcacacgtt gaggaggag                  4129
//
ID   Copia1-I_DM repbase;    DNA;    INV; 4124 BP.
XX
AC   gi|116010442|ref|NT_;
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   20-JAN-2009 (Rel. 14.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia19_DM;
KW   Copia1-LTR_DM; Copia1-I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4124
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 469-469 (2009).
XX
DR   Genome; gi|116010442|ref|NT_; Positions 2285804 2289927.
XX
CC   'GGCAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..4082
FT                 /product="Copia1-I_DM_1p"
FT                 /translation="MSVSIQIEKLGDDNYDVWSILMRSVLITADLWKVVCG
FT                 QYVKPEDGSEDSERWNMLDQKALASLFLNLKETQLMHIKACTTSADAWKKL
FT                 CDVHLPGGPIRKVQLYQKLSRLRMLEGDNVVQYVNKFAETVNKLAEMDITI
FT                 NDELKSIMLLSSLPNSWENFVVAIETRDTLPTFETVKVKLLEEGARKQERD
FT                 DREGSVQAVYVHTKLHGTAKQKQREENNLEKHSFKGKCYICEKFGHRAREC
FT                 PNKGRHKKLGESKEKSNCLMHISATTQRKNIWCVDSGATSHMCCDKGLFTS
FT                 FINKETSIMLAADKFVKSSGIGTVMLKSQNVNIELRDVIYVPSLHMNFLSV
FT                 SKSAEYENITTFDKKAAVIKNKQGEVMMRAMQEDNLYLFTSSSKNGAVHLL
FT                 NDSSRMATWHNRFGHLNFQCLKEIKEKELVIGMDFKNMSVNINCDTCNMAK
FT                 IHVLPFPQNSERATQSVLELVHSDVCGPMNVSSLGGNKYFVTFIDDYSRKI
FT                 FIYFMHAKNEVFDKFKLFKSYVECQTGKKIKALRSDNGTEYVNRQFTEYLN
FT                 TCGIKRQLTVPYTPQQNGVAERANRTIVEMAKSMLIHAKLEEFLWAEAVST
FT                 ASYLRNRCPSKALMGATPFEIWQNRKPSVKHLRVFGSRAFALDKTRKSKFQ
FT                 AKGKEYIFVGYSSTAKAYRLYDREKRIIVARRDVKFVEGEFESKKCTISEQ
FT                 NNDFATNIIHLESNIQVPEQQRPAMPMVVEQSSNSYDSCDSGEEEEEFVSA
FT                 SDEKQILTEEEIVPDVQEQESNAPRRGPGRPKIIRSGKSGRPRKQYNSLNY
FT                 IEDIETPQCVGDALRGEHAQDWKTSMQKEYDALVSNNTWTLCDLPPGQKAI
FT                 GSKWVFRVKRDKEGNIQKFKSRLVAQGCGQKMGVNYSETFSPVIRYETIRM
FT                 LFAIAAEKQLCMHQVDISNAYLNGRLQEEVYMRQPQNFIDEKHPNKVLKLQ
FT                 KAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNEACLYAKQQQQQHSYIAVYV
FT                 DDLIIISYDENEISAIKRKIANKFDIHDGGQLNYFLGMEIQRESTRGSISL
FT                 CQKQFIINLLDKYGMQNCRPAATPLDPGYKMGCRNENCVKVNITQFQSLIG
FT                 SLMYLAVLSRPDILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKIT
FT                 YSKSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWTSAKQSVVAMS
FT                 STEAEYVALSTAAKEAVYLRRLLLEIGWSLDGPITICGDNISSHHIAKNPV
FT                 HHKRTKHIDIKYHFVREKVECNEIILEYVPTDKNVADVLTKGLCKQKQQNF
FT                 TKLLGLN"
XX
SQ   Sequence 4124 BP; 1413 A; 764 C; 938 G; 1009 T; 0 other;
     gttggttatg ggccttcagc aagctaagtt ttcggtttga ataattcaaa gtaattaaat        60
     ggactaacac gcgtccggtt gaaactcgaa ataaataaaa aaactaattt gcggaattcg       120
     acaaaatgag tgtgtcaatt caaatagaaa aattaggcga cgacaattac gacgtatgga       180
     gcattttaat gcgtagtgtg cttataacag cagatctatg gaaagtcgtt tgtggtcaat       240
     atgtaaagcc agaagatggc tctgaagatt ccgaaagatg gaatatgctc gatcaaaagg       300
     ccctggcaag tttgttttta aatttaaaag aaacgcagtt aatgcatata aaggcatgca       360
     caacatcagc agacgcatgg aaaaaattgt gtgatgtaca tttgccaggt ggcccgatca       420
     gaaaagtgca gttatatcaa aaactatcaa ggctgagaat gcttgaaggg gataacgttg       480
     ttcaatatgt caataaattt gctgaaacag tcaacaaatt agctgagatg gacataacaa       540
     ttaatgatga attaaaaagc atcatgttgt tatccagttt accaaattcg tgggaaaatt       600
     tcgttgtagc gatcgaaaca cgcgacacgc tgccgacgtt cgaaacggta aaagtgaagc       660
     ttctggaaga aggagcgcgc aagcaagaga gggacgatcg cgaaggttct gtccaagccg       720
     tgtatgtaca tacaaaatta catggaactg caaagcaaaa acaacgcgaa gaaaataacc       780
     ttgaaaaaca tagtttcaag ggcaaatgct acatttgcga gaaattcggt caccgagcac       840
     gagaatgccc gaacaaaggg aggcataaaa aactagggga aagcaaggag aaatcaaact       900
     gcttgatgca tattagtgct accactcaaa ggaaaaacat atggtgtgtt gatagtggtg       960
     ccacgtcgca tatgtgttgt gacaagggat tgtttacatc tttcattaat aaggaaacat      1020
     cgattatgct agcagctgat aagttcgtga aatcgagcgg catcgggact gttatgctta      1080
     aatcacaaaa tgtaaacatt gaattacgag atgtaattta cgttccatca ttgcatatga      1140
     attttttatc agtgagcaag tccgcggagt acgaaaacat aactactttt gataaaaagg      1200
     cggcggtgat aaaaaacaaa caaggtgaag tgatgatgag agcaatgcaa gaagacaatt      1260
     tgtatttatt tacaagtagc tctaaaaacg gtgcggttca tttgttgaat gattcttctc      1320
     gcatggcaac atggcacaat cggtttggtc atttaaattt tcaatgttta aaagaaatca      1380
     aagaaaaaga gctagtaatt ggcatggact ttaaaaatat gtcggtgaat attaattgtg      1440
     acacatgcaa tatggcaaaa atacacgtat tgccattccc acagaatagc gagagagcta      1500
     cgcaaagtgt actggaacta gttcacagtg acgtgtgcgg gccaatgaat gttagttctt      1560
     taggcggcaa caagtatttc gtcacgttca tagacgacta ttcaaggaaa atatttatat      1620
     attttatgca tgcgaagaac gaagtgtttg ataaattcaa attgttcaaa tcatatgtcg      1680
     agtgccaaac gggcaagaaa ataaaagctt tgcgaagtga caacgggaca gaatatgtaa      1740
     accggcagtt tacagagtat ttgaacacct gcggcatcaa aaggcaatta acggttccgt      1800
     atacaccaca acaaaacggc gtcgcggaac gcgctaatcg aacgatcgtc gagatggcca      1860
     aaagtatgct gattcatgcg aaattagagg agtttttgtg ggccgaggcc gtgtccacag      1920
     cttcatattt gcgtaacagg tgcccttcca aagcactcat gggcgctaca cccttcgaaa      1980
     tatggcaaaa taggaagcca tccgttaaac atttgcgagt attcggatct cgcgcgtttg      2040
     cactggataa gacaagaaaa agcaagttcc aggcaaaagg aaaagagtat atatttgtag      2100
     gatactcttc aacagctaaa gcttaccgtt tatacgatcg ggaaaaacgt atcattgttg      2160
     cacgtcgtga tgtcaaattt gtagagggtg agtttgaatc taaaaaatgc actatttcgg      2220
     aacaaaataa tgacttcgct acaaacatca ttcaccttga gtcaaacatc caagtaccag      2280
     agcagcagcg gccggctatg cccatggtgg tcgagcagag cagtaattct tacgacagct      2340
     gtgactccgg tgaagaggag gaggagtttg taagcgcaag cgatgaaaag caaattctca      2400
     ctgaggagga gatcgtacca gacgtacaag agcaagaaag caacgcacct cgacgtggac      2460
     ccggcagacc aaaaattatt cgcagtggta agtccggtag acccagaaaa caatacaaca      2520
     gcctcaatta cattgaagac attgagacgc cacagtgcgt tggagacgct ttacggggcg      2580
     agcatgccca agactggaag acgtcaatgc agaaagaata tgatgctctc gtttccaata      2640
     acacatggac attgtgtgat ttacctccag gacagaaggc cataggatct aagtgggtct      2700
     ttcgcgtcaa aagggataaa gagggaaata tacaaaagtt taaatcaaga cttgttgctc      2760
     aaggttgtgg gcaaaagatg ggcgtcaact attcggaaac gttttctcca gtaatccgct      2820
     acgaaaccat cagaatgcta ttcgctatag cagcagaaaa acagctatgc atgcaccagg      2880
     ttgacatatc aaacgcatat ttaaacggca gacttcaaga agaagtttat atgaggcaac      2940
     cacaaaactt cattgatgag aagcatccaa acaaagtatt aaagcttcaa aaggcgatct      3000
     acggacttaa acagtctggg cgtgtctgga atgacacatt ggacgaagtt ttaaagagca      3060
     ttggttttaa gcgcagcaaa aatgaggcgt gcctgtacgc aaagcagcag cagcaacaac      3120
     acagctacat tgcagtatat gtcgacgatc taatcatcat cagctacgac gagaacgaga      3180
     tcagcgcgat taagaggaag atcgcaaata aattcgacat acatgatggc ggccaactaa      3240
     attatttcct tggcatggaa atccaacgag aaagtacaag agggtcgatt tcgctatgcc      3300
     agaagcagtt catcataaac ctattggata aatatggcat gcaaaattgt cgtcccgcag      3360
     ctacgccgct agaccctggt tataagatgg gttgtagaaa tgagaattgt gtcaaggtaa      3420
     atataacaca atttcaatca ttaatcggtt cccttatgta tttagcagtc ttgagccgac      3480
     cagacatttt gcatacagtg agcaaactgt cgcaaagaaa tactgatcca cacagtgaag      3540
     acgagactgc agcgaaacat gttttgagat acctttcagc cacggttgat ctcaaaatca      3600
     catacagcaa gtccggcgaa caggtaatgg gcttcgccga cgcagactgg gcaaacgacc      3660
     tgtcagatcg caaatcatac agtgggtatg cattcttcct tggaggcagt gcgttttcat      3720
     ggacttcagc taagcagagc gtcgtcgcca tgagcagcac agaagcagag tacgttgctt      3780
     tatccacggc tgcaaaagaa gcggtgtatc ttcgccgttt gcttttagag attggatggt      3840
     cattagatgg accaataacc atatgtggcg acaacataag ttctcatcat attgcgaaga      3900
     atccagtaca ccataaacgc actaagcaca tagatattaa gtatcatttt gttcgtgaaa      3960
     aagtagaatg taatgaaata attcttgaat atgtacccac tgataaaaat gttgcagatg      4020
     tactaacgaa aggcttgtgt aagcaaaagc aacagaattt tactaagttg cttggattaa      4080
     attaattttc gttttacatc acatatatat agcttaagag aaag                       4124
//
ID   Copia1-I_Dmoj repbase;    DNA;    INV; 4030 BP.
XX
AC   scaffold_6680;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1_Dmoj;
KW   Copia1-LTR_Dmoj; Copia1-I_Dmoj.
XX
NM   Copia1-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4030
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1018-1018 (2009).
XX
DR   Genome; scaffold_6680; Positions 20014551 20018580.
XX
CC   'CTTCT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..3309
FT                 /product="Copia1-I_Dmoj_1p"
FT                 /translation="MSSMYNIEKLDDSNYDCWSVMVESVLVHQNLWAVVSN
FT                 EFVKPEDETSEAFKTWKRENDKAKAVLILSMSASQVNYVKRCIYAKDVWNE
FT                 LKKLHQSSGPVRRVTLFKQLLNKKMAEGENLQTYIMEFSNIVENLSAIGIT
FT                 LQEELIVIMLLASLPSSFENFVVALEARDELPNFSSIKCKLTEENERRKIS
FT                 DQKEATQSFSARQTGQGGRERGRNETTDRRRYFKCYKCGQQGHYAANCTTK
FT                 EANEKYGKERRGKGNEKSERENGKNRDAHSNQRSFAGMMGNYRMSKDAWVI
FT                 DSGATSHMCARRDLFDNFEQHNESIELAGNNFTTACGRGTVVINSLCGFEI
FT                 TLKDVLFVPGLQCNFISVGKAVANGCSVEFNSGFCKVFDSENIVILIAKRI
FT                 SGLFLCETKNNEKLCLSKGADDIKKWHARYGHLNVQSLRELKSKDMVRGLA
FT                 VSSDIKHFDCINCLKSKCHARPFEDSKNRSKQICELIHSDVCGPIRQVSNG
FT                 GARYFLTMIDDKSRYIHVYFMKQKSEVTKIFKEHVTMLERQKGQKVKIIRS
FT                 DNGTEYVNKDFDEYIKLAGIKRQLSAPYTPQQNGVAERCNRTLVEMARVML
FT                 NSAALNESFWAEAVACAAYLRNRSPTKALDGITPFEAFTGLKPVVKHLRVF
FT                 GCTAIALEKGPKKKFQEKGKEYTMVGYSESSKAYRLFDKNTGDVKISRDVY
FT                 FIEDSVRESTEKASATIMVEDDNADQEGIQEDHSSTEEQPDDDADEAEQPR
FT                 RGPGRPKIVRTGLKGRPTKQYNMANVMLSNNIKVPLTVQQAQSSPQADEWR
FT                 AAMQEEYNALMCNDTWDLVQLPHGQKPIGCKWVFTLKTNSSGEVERYKARL
FT                 VAKGCGQRYGLDFKETYSPVVRYSTIRCILAMAAEYELYVHQLDVSTAYLN
FT                 GILEEDIYMQQPELYDDHSGCVLKLKRSLYGLKQAGRVWNTKLDGVLTKMG
FT                 YRACESEPCLYTKCSDDQTINLIAVYVDDMLLACSSMGEMLAAKKAISSEF
FT                 QVVDKGQVTNFLGFEIQREGRTGAIRVSQRKHIVGLLNEMGMSNCRTTSTP
FT                 LEANFQ"
XX
SQ   Sequence 4030 BP; 1345 A; 683 C; 1032 G; 970 T; 0 other;
     ggttatgggc ccagggctta tgtatgtgtg caacgaaata gtgtaaagca gagagaagaa        60
     agtgagctcg agaagtttct gtgcataacg gacattgcaa gcagaaaagt aaagctgaaa       120
     atgagttcca tgtacaatat agaaaagctg gatgacagca actatgactg ttggagtgtc       180
     atggtagaaa gtgttttggt tcatcaaaac ttatgggccg tggtttcaaa tgagtttgtg       240
     aagccagaag atgaaacgag tgaagcgttc aagacatgga aacgagagaa cgacaaagca       300
     aaagcagtgc taattttgtc gatgagtgcg tcgcaagtaa actacgtgaa gagatgcatt       360
     tacgcaaaag atgtatggaa cgaactgaaa aagttacatc aatcatctgg acctgtgcgt       420
     agggtaacgt tgtttaaaca gcttttaaac aagaaaatgg cagaaggaga aaatttgcaa       480
     acgtacatca tggagttttc aaatattgtt gaaaatctat cagcaattgg aattacgttg       540
     caagaagagt taatcgtcat catgctactg gcaagtcttc catcatcgtt cgagaacttt       600
     gtagttgcat tagaggctcg tgatgagttg ccgaatttca gcagcataaa atgcaagttg       660
     acagaggaga atgagaggcg aaaaatcagc gatcaaaaag aagctacgca atcattttcg       720
     gcaaggcaga cgggacaagg aggcagagaa cgaggaagaa atgagacgac agacagacgc       780
     cggtatttca aatgctataa gtgtggtcag caaggccatt atgcagcgaa ttgtacgacg       840
     aaagaggcga acgaaaaata cggcaaggaa cggcgcggga aaggtaacga aaaaagcgaa       900
     agggaaaatg gaaagaatag agatgcgcat tcaaatcaac gatcgtttgc tggcatgatg       960
     ggaaactatc gtatgagtaa agatgcttgg gttatcgata gcggagcaac atcgcatatg      1020
     tgcgcacgtc gtgatttatt cgacaacttt gagcaacaca acgaaagtat cgaattggct      1080
     ggaaataatt ttacgacggc ttgtggcaga ggcacagtag ttatcaatag tctgtgtggc      1140
     tttgaaatta ctctaaaaga cgtgttattt gtaccagggc tacagtgtaa tttcatatca      1200
     gttggaaagg cagttgccaa tggatgctct gttgaattta attcaggttt ttgcaaagtt      1260
     tttgacagcg aaaatatagt catattaatt gccaaaagaa tcagcggact gtttctgtgt      1320
     gaaacaaaaa ataatgaaaa gttgtgttta tcaaaaggtg ctgatgatat caagaaatgg      1380
     catgcacgat acggccattt aaatgtgcag agccttcgtg aactgaaaag caaagatatg      1440
     gtgcgtggat tggcagtaag ctctgacata aaacattttg attgtataaa ttgcttgaaa      1500
     agtaaatgcc acgctagacc atttgaagat tcaaagaata gatcaaaaca aatatgtgag      1560
     ttgatacata gtgacgtgtg tggacctata aggcaagtat cgaatggcgg cgccagatac      1620
     tttctcacaa tgattgacga taagagccgt tacatccatg tttactttat gaaacaaaag      1680
     tctgaggtga ccaagatatt taaagaacat gtaacgatgt tagagcgtca gaaaggtcag      1740
     aaagtgaaaa tcattagaag tgataatggc acagaatatg tcaacaaaga ttttgacgag      1800
     tatattaagt tggctggtat taaacggcag ctgagtgcac cgtatacccc gcagcaaaat      1860
     ggtgttgctg agcgctgcaa tcggacactg gttgagatgg caagagtaat gcttaatagt      1920
     gcagcattaa acgagagttt ctgggcggag gcagtcgcgt gcgctgcata tctaagaaac      1980
     cgatcaccaa cgaaagctct ggatggcata acacctttcg aggcgtttac agggctgaag      2040
     ccagttgtca aacacttgag agtatttgga tgtacagcaa ttgcactgga aaagggtcca      2100
     aagaagaagt tccaggagaa aggaaaagag tatactatgg tcggatactc cgagtcgtca      2160
     aaggcatatc gactgttcga caagaacaca ggtgacgtga agattagcag agacgtttat      2220
     ttcatcgagg atagcgtacg tgagtcaacc gagaaagcta gcgctacgat aatggttgaa      2280
     gatgataatg ctgatcagga aggtatacaa gaagatcatt ccagtacaga ggagcaacct      2340
     gacgatgatg ctgacgaagc tgaacagcca agaagagggc caggtaggcc taaaatagtc      2400
     agaacgggct tgaagggacg gccaactaaa caatacaaca tggcaaatgt aatgttaagc      2460
     aataacatta aagttccttt aaccgtgcag caagcacaat cgagtccaca agcagatgaa      2520
     tggagagcgg caatgcagga agagtataac gcattgatgt gtaatgacac atgggacctg      2580
     gttcagttac cacatggtca gaagcccata ggctgcaaat gggtgtttac tttaaagacg      2640
     aattcatctg gagaagttga gcgctacaaa gcgcgcttgg ttgcaaaagg atgcggccaa      2700
     aggtatggct tagacttcaa agagacgtat tctccagtag tgcgctacag tacaatacga      2760
     tgtatcctgg ctatggctgc agaatacgag ctttatgtac atcaacttga tgtttcgacg      2820
     gcatacctaa acggcattct ggaagaagat atctacatgc aacagccaga actctacgac      2880
     gaccattctg gatgtgtgct gaagcttaaa aggtcgctgt acggcctgaa gcaagctggt      2940
     cgggtttgga acactaagtt ggatggcgtt ctaaccaaga tgggatacag ggcatgcgag      3000
     agcgagccat gtctgtatac caagtgctca gatgaccaga cgataaacct gattgcagta      3060
     tacgtagatg atatgttact ggcgtgttca agcatgggtg agatgctagc tgctaaaaag      3120
     gctatatctt ctgaatttca ggtagtagac aagggtcaag tgacgaactt cttaggcttt      3180
     gaaatccaac gagaaggaag gactggtgcg attcgcgtga gccaaaggaa gcatatagtg      3240
     ggtctgctca atgagatggg catgtctaat tgccgcacca cgtcaacacc attggaagct      3300
     aacttccagt aaactgcgag agagagtcgt gtaagcgcgt tgatatcaca gagtatcagt      3360
     ctgtgattgg ttcgctaatg tatattgcgc tatgcacacg gccggacatc ttacattcgg      3420
     tgtgcaagct ggcacaacgg aattcgaatc cacatagcga acatcttgca gcagcaaagc      3480
     aagttttgag gtatctgcac accacagcag atctagcgtt agtctacgag aagacaggag      3540
     aggagattgc tggctatgca gatgcagatt gggctggaga ctcaactgat aggaagtctt      3600
     tcacaggata tgccttcatg tggggaggtt cggcattttc atggacctcg aagaaacaga      3660
     agtcggtggc gctgagcagt actgaggcag agtatatggc gctctctgat gctgcaaagg      3720
     aggcgattta tttaagaaag ctaataagcg aaatgaatcc gtattttaag agaaactgta      3780
     taagaattta tgaagataat gtaagcgcgt taaatcttgt gaagaatcct atatatcatg      3840
     cacgaagcaa acatattgat actaaatatc accatatacg aaattgttat gaaaataagt      3900
     tgatcgattt atcttattgt ccatcaaatg aaatgattgc cgatgtatta actaagaatt      3960
     tatcaagagt aaaacatatg aaatgtatag cgttaatcgg cctaatgaaa atataagaat      4020
     tgaggaagag                                                             4030
//
ID   Copia1-I_Dpse repbase;    DNA;    INV; 3027 BP.
XX
AC   Unknown_group_825;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   16-JUN-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1_Dpse;
KW   Copia1-LTR_Dpse; Copia1-I_Dpse.
XX
NM   Copia1-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3027
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1019-1019 (2009).
XX
DR   Genome; Unknown_group_825; Positions   13083   10057.
XX
CC   Positions [5291-5821] - Integrase core
CC   LTRs are 93% similar to each other. The original virus is a
CC   duplicate.
XX
FH   Key           Location/Qualifiers
FT   CDS           1257..2867
FT                 /product="Copia1-I_Dpse_1p"
FT                 /translation="MKIKNVSVNTNCDTCNKAKICALPFPQKAERVTKSVL
FT                 ELIHTDVCGPMNVKSLAGNRYFVTFIDDYSRKIHVYFMRAKNQVFEKFKMY
FT                 KSYVECQTEKTIKALRSDNGTEYINNEFTNFLNACGIKRELTVPYTPQQNG
FT                 VAERANRTIVEMARSMLINAILKEFLWAEAVQTAVYLRNRCPTRALNGCTP
FT                 FEAWKKRKPSVNHLKIFGSRAFALEKTKKGKFVAKGKKYIFFGYSFAAKAY
FT                 RLYDQEKQMIVERRDVKIVKGEFVKELNDIYENGYQTEDLAKIIIRFESNE
FT                 EPVQVQTAVETEEETISNIDNSDDDEEGNFVSASDPEQSRSSDEEDIPQIR
FT                 GPGRPKIIRTGQPGRPKKQYNVPNNLSCSDDIETPRTVAEALQSHDAEEWK
FT                 KSMRKEFDALVSNNTWTPVNLPPGKKAIGSKWVFRIKRNQNGDIERFKSRL
FT                 VAQGCGQQFGVNYWETYSPVIRYETIRMLFAIAAEKQLHMHQVDISNAYLN
FT                 GKLQKVAYMKQPVGFIDEQNPHKVLKLQKAIYGLKQSGRV*"
XX
SQ   Sequence 3027 BP; 1065 A; 562 C; 702 G; 698 T; 0 other;
     tgcgtagtgt attgatcaca acggatttgt ggacatatgt aagtggtaaa gccgaaaggc        60
     cacaggagga agcagcagga acacaggaac acttggcaca gtgggacaag gctgatcaaa       120
     aggcgttggc atgtattata ttaaatgtaa aagcaacgca gttgatgcac ataaagtcgt       180
     gcacaacgtc gaagtaggcg tggcaaaaat tacgcgatgt acatgtgtca gtgggaccag       240
     tgcgaaaggt acagttatac caaaaacttt tgcggcaaaa tatgcaaaac ggtgataacg       300
     tggtacaata tgtaaattct ttcgtggaaa ttactgaaaa gttagccgag ctaaataccg       360
     acattcaaga cgagctaaaa gtaataatgt tgttgtcgag cttgcccagc ggttgggaaa       420
     atttcgtcgt ggcgatagaa acacgcgaca gtctgccgtc gttcgaaacg gtaaaagtaa       480
     aaatacttga agaaggagca cgtaaagacg aaagagacga tcgtgagctt gctgtacagg       540
     cagtgtacgc acacacacag actcaaagaa acggtgcgcg ttcgaagaat tacggcgcca       600
     gtcgaaaaga cagcaaacga gacggccaga aatccaacga gcaacgcgag tttcgaggaa       660
     aatgctacaa atgtaaacaa agcgggcacc gcgcatccga gtgcaaaagc aacaaagata       720
     atacgaaaga gtgcgggatg aaaaatcaaa ctgtttaatg cacagctgcg ttgttaagca       780
     gcgaaaaaat tcttggtgta tcgacagtgg ggcaacatcg catatgtgtt gtaataaaaa       840
     tttgtttgaa acctttaata agaaaaacac aaccattatg ttggctgcag aaaaggatat       900
     tgagtcccta ggtattggaa ctgtaaaaat taaatcaaat gaaacaaata tagaattgcg       960
     aaacgtgttg tatgtgccgg atttaaaaat gaattttttg tcggtgagca aagcagccga      1020
     gttcgggaat gtcactacat tcggaaattc agaagcttta gtgcgaaata aacatggaca      1080
     tataatgttg cgagcggtac aagaaaacaa tttatacgtg tatggagtgg aaaaaaccac      1140
     tgatgcagtg catttgatat ccgatatatc tcttgcaaaa aaatggcata gccgctacgg      1200
     gcatttaaat tttcaaaatt taaagaatct ttgtgaagaa agaacgtgta atcgggatga      1260
     aaattaaaaa cgtatccgta aacacaaatt gcgacacatg caataaggct aaaatttgtg      1320
     cattgccgtt cccacaaaag gcagaacgtg ttacgaaaag tgttctcgaa ttgatccata      1380
     ccgacgtatg cggacctatg aatgttaaat ctctggctgg aaaccgttat tttgttacat      1440
     ttatagacga ttactcgcga aaaattcacg tatattttat gcgcgccaaa aatcaagttt      1500
     ttgagaaatt taaaatgtat aaaagttatg ttgagtgcca aaccgaaaaa acaatcaaag      1560
     ccttgcgaag cgataacggt actgagtaca tcaacaatga atttacaaat tttttaaatg      1620
     cgtgcggaat aaaaagagaa ctaacggtgc cttacacacc tcagcaaaac ggcgttgctg      1680
     agcgcgcaaa tcgtacaatc gttgaaatgg ctaggagtat gttaattaat gcaattttaa      1740
     aagaattttt gtgggctgaa gccgttcaaa ctgcagtata tttgagaaat agatgtccga      1800
     ccagagcgtt aaatggatgc acccccttcg aggcttggaa gaagcgcaag ccgtcggtaa      1860
     accatctgaa aatatttggt tcacgcgcat ttgcactgga aaaaaccaaa aaaggcaaat      1920
     tcgttgcaaa aggaaagaag tacatttttt ttggctactc ttttgccgca aaagcatatc      1980
     gattatatga ccaagaaaag caaatgatag tggaacgccg agacgtcaaa attgtgaagg      2040
     gtgagttcgt caaggaatta aatgatattt acgaaaatgg atatcagact gaggatcttg      2100
     caaaaatcat catacgcttt gagtcaaacg aagaacctgt gcaggtacaa actgctgttg      2160
     agaccgaaga agaaacgatt agcaacattg acaacagcga tgatgatgag gaggggaact      2220
     tcgtaagtgc aagcgatcca gaacagagcc gcagctcaga tgaagaagac atcccacaaa      2280
     tacgtggccc aggaaggcca aaaatcattc gtactggtca acctggcaga ccaaagaagc      2340
     agtacaatgt ccccaacaat cttagctgct ccgatgacat tgagactcca cggaccgttg      2400
     cagaggcgtt gcaaagccac gatgcagaag aatggaaaaa atctatgcga aaggaattcg      2460
     atgcactcgt gtcaaataat acatggactc ctgtcaatct tccgcccggt aaaaaggcga      2520
     taggttcaaa atgggttttc agaatcaaac gcaaccaaaa cggtgacatt gaaaggttta      2580
     aatcgagact tgtggcacaa ggatgtggcc agcagtttgg cgtaaactac tgggagacat      2640
     attctccagt gatacgttat gagacaatcc gaatgttatt tgcgattgct gcagaaaagc      2700
     agttacacat gcatcaggtg gatatctcta acgcgtatct caacggtaaa ctccaaaaag      2760
     tcgcctacat gaagcaaccc gtaggcttta tagatgagca gaacccccac aaggtactca      2820
     aacttcaaaa ggctatctat gggctgaagc agtctggacg tgtctagaat gacacattga      2880
     acgaggtgct ggttaacatg ggctttaaaa aaagtcaaca cgagccatgt ctatacgtca      2940
     aacagcatca acaaggcttc agttatatag cagtttacgt cgacgacctg ataatcatct      3000
     gtacaaaaga gatggacgtc agcgcga                                          3027
//
ID   COPIA1-LTR_AG repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA1-LTR_AG is a long terminal repeat of the COPIA1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA1-I_AG; COPIA1-LTR_AG; COPIA1_AG; Copia clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-153
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "COPIA1_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 50-50 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA1-LTR_AG is a long terminal repeat of the COPIA1_AG LTR
CC   retrotransposon. There are ~20 copies of COPIA1-LTR_AG in
CC   the genome.
XX
SQ   Sequence 153 BP; 48 A; 26 C; 22 G; 57 T; 0 other;
     tgttgagaaa gcaacatgtg tgcaatgaac acatcatagt agtctttaga aaatgtttaa        60
     tattgtcagt ctagtttaaa atacattaca tacaagttca ttgtttagtt tctgctcctc       120
     ttttattcca ctgtgttata actacgctca aca                                    153
//
ID   Copia1-LTR_DM repbase;    DNA;    INV; 203 BP.
XX
AC   gi|116010442|ref|NT_;
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   20-JAN-2009 (Rel. 14.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia19_DM;
KW   Copia1-I_DM; Copia1-LTR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 470-470 (2009).
XX
DR   Genome; gi|116010442|ref|NT_; Positions 2285601 2285803.
XX
SQ   Sequence 203 BP; 60 A; 40 C; 33 G; 70 T; 0 other;
     tgttgaaatt acgttataat ttaaataagc tttatatgtt ttgatctggc aacgctcaat        60
     tatagcttaa gaagtcattg tgaaattccc attactcagt ttcaattaaa ccgtcaacta       120
     caccactacg ttcctgtgtt tatttgctcg gtcggtctag aagcacataa cggttgtcct       180
     gatcgtacgg taaatcacta aca                                               203
//
ID   Copia1-LTR_Dmoj repbase;    DNA;    INV; 137 BP.
XX
AC   scaffold_6680;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1_Dmoj;
KW   Copia1-LTR_Dmoj; Copia1-I_Dmoj.
XX
NM   Copia1-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-137
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1020-1020 (2009).
XX
DR   Genome; scaffold_6680; Positions 20014414 20014550.
XX
SQ   Sequence 137 BP; 43 A; 33 C; 21 G; 40 T; 0 other;
     tgttgatatg gcaattctca tattagtggc aacgctatca tgtacttagc tattaagaag        60
     cataataaat cagtctcact tgaacaacca aacgttgcgg ttcttcttat ccactcgcgc       120
     acaaatactc gccaaca                                                      137
//
ID   Copia1-LTR_Dpse repbase;    DNA;    INV; 214 BP.
XX
AC   Unknown_group_825;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1_Dpse;
KW   Copia1-I_Dpse; Copia1-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1021-1021 (2009).
XX
DR   Genome; Unknown_group_825; Positions    5149    4936.
XX
SQ   Sequence 214 BP; 66 A; 47 C; 34 G; 67 T; 0 other;
     tgttgaaatt tgaagtgtaa ccataatatg atctgtctgg caacgctaat taacataatg        60
     tacatgaaca gcgagagcct ctattatctc tcgtctctcc tattcgtatg taagtacata       120
     tgtacacatg tcatcgcttc agttctgaat aaaccactta tgagcacaga cgcgccgttc       180
     tctatttaat acatttcaaa aggcgcaatt caca                                   214
//
ID   Copia1-NVi_I repbase;    DNA;    INV; 5397 BP.
XX
AC   AAZX01001609;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1-NVi;
KW   Copia1-NVi_I; Copia1-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5397
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1106-1106 (2007).
XX
DR   Genome; AAZX01001609; Positions   11872   17268.
XX
CC   'AAAAT' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1842..3854
FT                 /product="Copia1-NVi_I_1p"
FT                 /translation="MEEQNKMFLKGIELLVKQLVAPARQDLDITPATDSAA
FT                 KPIEAENATNSKPGNSSSLRVKEKPRITSNVFLKSSPFIREAASTPIPKQK
FT                 VGPERVTELHEMNINMSSFITEKELGQSKLPPSPNDEILENPSDSESQKSN
FT                 MVFTEKRDLLGRKTTALSFFNGRDTCSSASNNDKVTNNDNDTNRLSNETFT
FT                 AALINELVESKVKLMINENEKENSLLNLSEQLKIEFSNRDNQSTRNYKLTS
FT                 NMKFEIFEDYLKSELRIKKLIYILDNESLHDYDEQKLTDDKFKVQDIIINR
FT                 IDLIYYNKIINLTEPIEILKKIKDVKRYETRTTSISARNDLNSIKYQPSRE
FT                 TTSDFYDKFQEKVRVFENIPGAGKLMEKEKSDYFIQAVSEAVPGIITADSV
FT                 YTETTAAEMSCDQLMNHLLKVEAARSGKEPKIPVKTFYTQAKKTGQGRCIC
FT                 HGCGMEGHVQSECPHPVGLPQSNWDLAVKTAVYIYNRTTHKSIGMKTPLSE
FT                 ILPSQSDYLKQIKRFGCAAYIKILRNTETKFSPQAMLGFLVGYFNTGYTVL
FT                 VPKENKLYDSKHVRFVESLTYKDFPSENSETTDDLELSFSMAQESMDSIKE
FT                 SSENQVVNEPLQPKRKRGRPKKSIKVMFFLCETPEEKDLEYDRELSDLKYH
FT                 ALLAKYQSRTLCDKRQAGLYSS"
XX
SQ   Sequence 5397 BP; 1979 A; 919 C; 1114 G; 1385 T; 0 other;
     ggttctgggc cagtgaggtt ggacgcttcc actgcacaga gtgctcgggt tccgcggatt        60
     caaattaacc gtgtgagcgc atcggcgcgt acgcctttgt gcgcttatcc gtgtcgtgtt       120
     ctcgtctcga acgatcgtga gtgtagtgag gtgacaagga cagacgaact caagggttgt       180
     gtaaatcaca cccgcaccct tggtcatcct acacgagaga gaaaaacgac agagacaagg       240
     agcttcagga aagagatttg cacgtgtacg gcacaacaaa gagggctgcc atgacacaac       300
     agatatcaac taccggcact tctgcgaata agtagttatt atacatatat cacgagattc       360
     agacaaagag ttcgcgctta aaattcacta ccatagaaag atgtcttgtt gcaaatagtt       420
     aaaatagtgt taaaattaga taaagtcagt acatagatcg ggaagtgaaa taaagtaaaa       480
     tgtaaaaaga atacagtgat agacgaaaaa tagccgtgac aaagaaagca gcgaaaatcc       540
     gaaaaatttc gagtacaaga aaagtaacag aggctcttgc gcgttttgtc gattccgaga       600
     atcgagaagt cgcgactggc taaacaaggg gagaggcgtt acgtcataag atggcgggcg       660
     cctgcttcct cgtgtagagt caacaagtct ttcattgcct agcagcgaga gtgcggttga       720
     gcgggacaag gggagcggcc atattgggac ttgttctctc tcgctcttgc gagtcgcggg       780
     ctgagagagg gagactgcga cggccggtat tcggccgggc gagcggatga atttttggcc       840
     tctctctttc tctcgctgcc gcgacgtggg ctgtaacgcg tatatgcaga tacgacgttg       900
     ctgcactaca caaagagcat agagcggcgc tacagtagcg cgcatattta ccgatataga       960
     gtcgaatgca taactttcat tcaaataatg agtaaataaa gtattaaata agacaccttg      1020
     gttctaataa caatataata taacgaatat acacatatgt acataactga atttgagaat      1080
     tgagaaattt tatataaaac ggatttatag aatttaaatt cagaaattct gggatttcaa      1140
     aattcaggac aagaattttt tattcaagat aaataattaa ttcttgtaaa attaaaatcc      1200
     tgtgttgcaa gattataact gcagttcaaa actttaaaat cgtattcagt gagggcccga      1260
     ctcgaatacg taccagtttt agctctaaaa actgagcaaa gcttatgact tagtcaaatt      1320
     aattcgtttg aaaattaatt tcagtcattt ttaattaaaa gccaacacag taacatagag      1380
     ttaagtcaat agatagacat tcaagaacaa gagcattctt tagaagaatg taaatagata      1440
     aagataaaag aaagaaagaa taagaaaata attataataa aatttacaaa gaaagtaaaa      1500
     acgaaaaaat gatattgttt actaattata ttgttgaacc aacaggtgca gacagtgagg      1560
     agtttaggaa aatcatccta agagagtggg aagcttcaga ggagtaagag tctccaggta      1620
     atccatatac cgggaactcc attaccttgc taagaaaaac ggatggttct ctgtattttt      1680
     ggaaaacaga acatcaaata agaagatttg acaactatct tcgaccaaaa gaaagggcgc      1740
     tcgtcgacag agtgtggcca ctcagagaaa agtttctcaa atttaacctg gaatatgtac      1800
     caacagcaga gtacgcaaca aagaagaaag tacttggact catggaggaa caaaataaga      1860
     tgttcctgaa gggcatcgag cttcttgtga agcagctggt agccccagca agacaagacc      1920
     ttgatataac accagcaacc gactcagctg caaagccaat cgaggctgag aatgctacga      1980
     attctaagcc aggaaactca agcagcctca gagtcaaaga aaagcctaga ataacgtcaa      2040
     acgtgtttct aaaatcatct ccttttatta gggaagctgc atctacgcca attccgaagc      2100
     agaaagttgg gccggaacgg gtgaccgagc ttcatgaaat gaacataaac atgtcgtctt      2160
     tcatcactga gaaagaatta ggacagagca agctgccacc ttctccaaat gacgagattc      2220
     tagaaaatcc atctgattct gagagtcaaa aatccaacat ggtttttacg gagaaacgag      2280
     atctactagg aagaaagaca actgccctaa gtttcttcaa tggacgtgac acctgttctt      2340
     ctgcttcaaa taatgacaag gtaacaaata acgataatga tacgaataga ctttctaatg      2400
     aaacttttac agctgcttta attaatgagt tagtagaaag taaagtcaaa ttaatgataa      2460
     atgaaaatga aaaagaaaac agtttattaa atttatcaga acaattgaaa attgaatttt      2520
     caaatagaga caatcaatcg acaagaaatt ataaactaac atcaaatatg aaatttgaaa      2580
     tatttgagga ttatctcaaa tcggaactaa gaatcaaaaa attaatttat attcttgaca      2640
     acgagtctct tcatgactat gacgaacaaa aattgactga tgataagttc aaggtgcaag      2700
     acataataat aaatagaata gacctaattt attataataa aataataaac ttgacagaac      2760
     ccatagagat actgaaaaag atcaaagacg ttaagcgata cgaaactaga acgactagta      2820
     tatctgctag aaacgattta aattcaataa aatatcaacc aagcagagaa actacttcag      2880
     atttttatga taagtttcaa gaaaaggtga gagtatttga aaatataccg ggagctggaa      2940
     aactcatgga gaaagaaaag agtgattact ttattcaggc ggtttcagaa gccgtacctg      3000
     gaattatcac agcagatagt gtttatacag aaactacagc ggccgaaatg tcgtgcgacc      3060
     aactaatgaa tcacttgtta aaggttgaag cggcaaggag cggcaaagag ccaaagatcc      3120
     ctgtaaagac cttctacaca caagccaaga aaactggtca aggacgctgc atctgccatg      3180
     gctgtggcat ggaaggacat gtacagtcgg aatgtccaca tccagttgga ttgcctcaat      3240
     ccaactggga tttagcagtc aaaacagcag tatacattta caatagaacc actcataagt      3300
     ctataggaat gaaaactcca ctaagtgaga ttctgccatc ccaatcagat tatttaaagc      3360
     agattaaaag gttcggttgc gcagcatata ttaagatact acgtaacaca gagacgaaat      3420
     tttcacctca agcaatgtta ggttttctgg taggatactt taatacaggg tacactgtcc      3480
     ttgtacctaa agaaaataaa ctctacgaca gtaaacatgt gagatttgtt gaaagtttaa      3540
     catacaaaga ttttccgtct gagaattcag aaacaacaga tgacttagag ttatctttct      3600
     caatggcaca agagtcaatg gactcaataa aagagtctag tgagaaccaa gttgtaaacg      3660
     aacctttgca acccaaaagg aaacgaggta ggcctaagaa aagcatcaaa gtaatgtttt      3720
     tcttatgtga gactcctgaa gaaaaagacc tggagtatga ccgagagctg agcgacctca      3780
     aatatcatgc gttactagca aaatatcaga gcagaacttt atgcgataaa agacaagcag      3840
     gtctatacag tagttgaaag atcaaaaata ccaatgggta ataaaaggcc taatatcata      3900
     gattcgagat gggtttttaa gaaaaagaca gacgagaaag gatcagtaaa acacaaagtt      3960
     agacttgtta ttcgaggctt taaggacaaa aatagttatg atttaaaaga aacgtatgct      4020
     ccggtatcga gaatatcgtt gatcagagca ttcttttcga tttcaaacaa atacaagtat      4080
     ataattagac aactagatgt cgaaactgct tttctctatg acgaactatc tgaggatata      4140
     tatctggaaa tcccagaggg agttcaagta aacgaagata cgaaaaaaca atttgtttgg      4200
     aaactcaaca aatctttgta cggtttaaag ataagtccta aaaaatggaa cgataaattt      4260
     tccagtgtaa taaactcatt aggttttacg tctcacgata ttgatccttg cttgtttatc      4320
     tataacaaaa actctgacat tgtgcttgca attctctacg tagacgatat tctcttagct      4380
     gggcctaatg gcaatctact gaacaagttt agcaagagct taagtttaaa attcaaaatt      4440
     aaagatttag gaagtcctaa agaatttttg aatatcaata tcagcagaga cttagacaaa      4500
     caaattatta aattgaatca gtgataaatt taaatttaga aagactccta ttaaacctac      4560
     tgatgcagcg agctgtgata ggaaagagag ggaggaagac gaatatacag aagagagaat      4620
     accaaaccga ctgtacagag aagctgttgg atctctcttg tatctagcag gtacaacgag      4680
     atctggaatt tcatatgctg ttaatgtgct tagcaggcac caagtcaatc ctacaaccaa      4740
     cgagtggaag atggtaaaga gagtatttca gtatttatca gggacaaaga attatagctt      4800
     aatctttctg aatgcttctg agaatatgac cgcttatgct gatgcgagtc tgtcagattg      4860
     taagaacact ctgactacct gcgggtatgt gattcagctg ttcggtaatg ctgttgcctg      4920
     gagaacgcac aagcaacaaa gtgttgcttt atcaacttgt caggctgaat atgtagctat      4980
     gagtgaggct tgtcaagagg caatgtcctt acataactct gtatcaatta tgcttgaaaa      5040
     gaatttgtat ccaataacac tgcgatgcga taatacatct gcgatatctt gtgctaaagt      5100
     taacggtgga aatagactta gacatatggt agaaagacgc gaccactata tcaaagaatg      5160
     tgtaaaccga ggtcatgttg tagtagaatg ggttaaatct aaagaacaac ttgaggatat      5220
     ttttatgaaa gctctacaag atactttaca taaggactta acttataaaa taactaattt      5280
     aaatcaaaac aatcaatgag ttctctttat gtttatttag ataattccgg agaggagaaa      5340
     tcacaggaag aaaaggatga agagtcctgg gactaaagag tcaaaagtga gagagag         5397
//
ID   Copia1-NVi_LTR repbase;    DNA;    INV; 257 BP.
XX
AC   AAZX01001609;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia1-NVi;
KW   Copia1-NVi_I; Copia1-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-257
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1139-1139 (2007).
XX
DR   Genome; AAZX01001609; Positions   11615   11871.
XX
SQ   Sequence 257 BP; 62 A; 72 C; 50 G; 73 T; 0 other;
     tgttagaatt tgcgcgtagc aacagaactt tcgctcttcg tcagtcccta aagcctaagc        60
     gcatgcgcgc cgtcagcgcg ctcggtgaga gagactctcg tctctcagcc gcttacttct       120
     ccgccgtctc tcaaagagag agagagagca ctcttaaaga gtaatcgttg ttcttaagtt       180
     acaataaagc ttcggtgcgt tttcttatac acacatgttt catcatttta tagtctacct       240
     caccacctcc tccaaca                                                      257
//
ID   Copia10-NVi_I repbase;    DNA;    INV; 4595 BP.
XX
AC   AAZX01001646;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia10-NVi;
KW   Copia10-NVi_I; Copia10-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4595
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1107-1107 (2007).
XX
DR   Genome; AAZX01001646; Positions    9259   13853.
XX
CC   Positions [1671-2201] - Integrase core
CC   'AAAGT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(459..1286,1290..4487)
FT                 /product="Copia10-NVi_I_1p"
FT                 /translation="MEATTTKFESCRSMEDYVARIISATKKLATIGTKLPD
FT                 DLIGALLLAGLPPAYKPMIMALSNSGAEITGDLIKNKLLEESQSVTDDFES
FT                 RGLHVQAQAAQFSNRSHRGRGNYHRTRGSRQSAAPSSRNPATNVRCYNCNE
FT                 FGHYANKCTEPKRNKNHACTMSAEGDSDTEETVCALFVPSSVTHTHTARLD
FT                 TSAADSETAVLKADNALLAVGLLSTTSKQEWILDSGASTHMCCEGVHLTNI
FT                 RAPKTTEVTAADKAKIRVQAEGDLHITNTGYVGSKILLQNVLHIPGLTANL
FT                 VSVSAITRQGGAVTFKEKKCQVMDHTGSVVLEGNMCNNNVYKLNLQPNPGQ
FT                 SSKVSTAVAFKAVQKHSITLWHRRMAHLNVNYLKQLKEVAVGVDFDDKLLH
FT                 KCEICVAGKLTNKPFQATSTRASRVLQLVHSDVCQVEDLSLNKAKYFLTFL
FT                 DDHSRKLFVYFLQKKDEVPEVTQKFVLFAENQTGQRLKILRTDNGREYVNE
FT                 RLRTFLQSKGVKHETSIPYHPQQNGRAERVNRVLLEKVRCMLIEASLRNKF
FT                 WAEATPTACYLSNRSPKKCLGGKTPEELWTGQKPDLTLLRVFGCQARAFIP
FT                 SNLRKKIAPTSKQAIMIGYCENQKGYGLWSHEEQRIFTASNVEFFEDEQPK
FT                 NVPANRIYLSIENHEPLYEHNQDEPAVRVEEPAKSESEEKVPEKEVLKGEV
FT                 SEKESKLKRRLPISKSIREEEPGNKILKKDLPVNPDFNRRDVQNYAENEQV
FT                 QIKKGGKSSVKPAASNLSRPLTRSVSNQLDEEASSDEEYKTEPVRKTQRRR
FT                 KKPKHLDDFVTYSATIEEGEPKNYQEAISCSESDQWRRAMAEEYSSIVKNN
FT                 TWQLCNRPSGESVVGSKWIFKKKRSADGSTRYKARLVARGFSQQKGVNYDE
FT                 TYSPVVRFVSLRLLFAYAVRRDLDIYHLDVETAFLHGDMTDTVYLQQPEGF
FT                 VAKQHENQVCLLKKAIYGLKQGSRNWNIKLDGALKKLNLRQSKLDSCVYSF
FT                 SNSVKLIIVALFVDDLIVFTNSIDFLDILKQGLMNICVVKDLGPLKRCLGV
FT                 NVHYDKTKGVMKLEQTDYINTLLRNFGMEECRSVSTPLETNINSRSGSPSS
FT                 AKFNPAVVPYQNAVRSLLYLVQATRPDLAHAVGEISRHNLDYDESHWAMIK
FT                 RVLRYVQGSKHLRLRYTRDGDDFISGYCDTSWAGEQGDRRSTSGYIFMVQG
FT                 GVISWNSRRQSTVALSSIEAEYLSLSAAAQEALWLGTLASELRIRDDKPMP
FT                 IYCDNKGAIDLSKNSRFSPRTKHIDVRHQFIKEYIEKGEIEVIFIPTTQQL
FT                 ADTLTKPVGPAKLNQFINAASMRVAEKRED"
XX
SQ   Sequence 4595 BP; 1482 A; 1017 C; 1076 G; 1020 T; 0 other;
     ggttatgggc ccaggaagca tctcaacgaa aactgcacaa gtattccgtt gccgaaaaga        60
     cttgcgacca tgacacgcca tagccgttgg cgtccttgac ctgaaggtca cagctggagc       120
     acagtggttg ttccttaccg aaaatggcga gccgaaatca aatttcatcc ttccagatac       180
     tggataaact gtcatgaaga gaaaattatc gatcttgggc agtagctatg cgcgcatatt       240
     tagagatcga agacttatgg gatacggttg aacaaccagc cggtggaaca atcagcacag       300
     acccgaagaa actggccaag gcgcgagggc gcatgatatt agcagtggag cccgaaattt       360
     acccgtaact ggagaatgcg gttactccga aacaagtgtg gggcgaactg gccaaaacct       420
     acgacgacaa aggattggca cgaaaggtac accttctcat ggaagctaca acaacaaagt       480
     ttgagagctg ccgctccatg gaggactatg tcgcccgcat catctccgcg acgaagaagc       540
     tcgcaacaat tggaaccaag ttgccagacg acctaattgg agctcttcta ctcgcaggac       600
     tcccacccgc ttataagcct atgataatgg cgttaagcaa ctcaggtgcg gaaattacag       660
     gtgatctcat taaaaacaaa ttgctggaag aatcgcaatc cgtaacggat gattttgaat       720
     cacgcggact tcacgtgcaa gcgcaagccg cgcagtttag taatagatcg cacagaggac       780
     gtggcaatta ccacagaacg cgaggatcgc gtcagagcgc cgcccccagc tccagaaacc       840
     ccgcaaccaa tgttagatgc tataactgca acgaattcgg acactacgca aataagtgta       900
     cggagccgaa acgcaacaaa aaccacgcgt gtacaatgtc ggcggaaggc gatagtgaca       960
     ccgaggagac tgtgtgtgcg cttttcgttc cgtcatcggt gacacatact cacacagctc      1020
     gactcgacac ctctgcggcc gattccgaga cagcagttct gaaagcagac aacgcgttac      1080
     ttgcagttgg tctactgagt accaccagca agcaagagtg gatcctggac tccggtgctt      1140
     cgactcacat gtgctgtgaa ggagttcatc tgacgaacat acgtgcaccg aagaccacag      1200
     aagtcacagc agccgacaaa gcaaaaatcc gggtacaagc tgaaggagat ctacacatta      1260
     ctaatactgg atacgtaggc agcaaataga ttctacttca gaacgttctc catatccctg      1320
     gtttaacagc gaatctagtc tcagtcagtg caatcactag acaaggtggt gcagtaacgt      1380
     tcaaagaaaa aaaatgccaa gtcatggatc ataccggatc agttgtcctg gaaggtaata      1440
     tgtgcaataa caacgtctac aaactgaatt tgcagcccaa cccaggtcaa tccagcaagg      1500
     tcagcacagc agttgcattc aaggcagtgc agaagcacag tataactctg tggcatcgac      1560
     gaatggctca cctcaacgtc aattacctga agcagctgaa agaggtagca gtcggagtgg      1620
     attttgatga caaactactg cataaatgtg agatttgcgt ggcaggcaaa ctcacaaata      1680
     agccattcca agccaccagc acaagagcat ccagagtact gcagttagtg cacagcgacg      1740
     tgtgtcaggt ggaggatttg tctctgaaca aggccaaata ctttttaaca ttcctggatg      1800
     accactcgag gaaactgttt gtttattttc tccagaagaa agatgaagtc ccagaggtaa      1860
     cacaaaagtt tgttttattc gcagagaatc agacaggcca aagactcaag atcctcagga      1920
     cagacaatgg acgagagtat gtaaatgaga ggctcagaac atttctccag agcaagggcg      1980
     tcaaacatga aacgtcaata ccctatcacc cccagcagaa tggtcgtgca gaaagggtca      2040
     acagagtgct gctggagaaa gtgaggtgta tgctgataga agcatcgctt cgaaacaaat      2100
     tttgggcaga agccacacca acagcctgct atctctccaa tcgaagtccc aagaaatgtc      2160
     ttggaggaaa aactcctgag gagctgtgga caggacaaaa accagatctc acactactga      2220
     gagtttttgg atgtcaagcc agagcattca taccaagcaa tctcaggaaa aagattgcac      2280
     ccacgtcgaa acaagccatt atgataggct attgtgagaa ccagaagggt tatggattgt      2340
     ggagccacga agaacagaga atattcacag ctagcaacgt tgaattcttc gaggatgaac      2400
     agcccaaaaa tgtacctgca aacaggatat acctatctat tgagaatcat gaacctctgt      2460
     atgaacacaa tcaagatgaa ccagccgttc gcgtagaaga acctgcaaaa agcgaatcag      2520
     aagaaaaagt acctgaaaag gaagtgctga aaggagaagt atctgaaaaa gaaagtaagc      2580
     tgaaaagaag attaccaata agtaaaagca ttcgcgaaga agaacctgga aacaagatct      2640
     taaaaaaaga cttaccagtg aacccagatt ttaacagaag agacgttcaa aactacgcag      2700
     agaatgagca agtccagatc aagaaaggag gcaagtcatc tgtcaagcca gctgcttcta      2760
     atctctctag acctctgaca agatcagttt caaatcaact ggatgaggag gccagctctg      2820
     acgaagaata taagactgaa cctgtaagga agactcaacg cagaagaaag aagccaaaac      2880
     atttagatga ctttgtcacc tactcagcaa cgattgaaga gggtgaaccg aaaaactacc      2940
     aagaagctat ttcctgctcc gaatctgatc agtggaggcg agctatggca gaggagtatt      3000
     cttctatagt gaaaaataac acctggcaat tgtgcaatcg gccttcgggt gagtccgtag      3060
     ttggcagtaa atggatcttt aagaagaaga gatcagctga tggaagtacc cgctacaaag      3120
     caagactagt tgccaggggt ttctcacagc agaaaggagt gaactacgat gaaacgtact      3180
     cgccagtagt tcgtttcgtc tcattgagat tactctttgc gtatgcagtt agaagggact      3240
     tggatatcta ccatttggat gtagaaactg cttttctgca tggtgacatg acagatacag      3300
     tctatctcca acagcctgaa ggttttgtcg ccaaacaaca cgaaaaccaa gtctgccttc      3360
     tcaagaaggc catttatggt ctaaagcaag gaagtaggaa ttggaacatc aaactcgatg      3420
     gtgctctgaa aaaattaaac ctcagacaat ctaaactcga ttcgtgtgtt tatagctttt      3480
     caaacagcgt taaactaata attgttgcct tattcgtaga cgatctcatc gtttttacca      3540
     acagcatcga cttcttggat atccttaaac aaggattgat gaatatctgt gttgtgaagg      3600
     atctgggacc actcaagaga tgcctgggtg taaatgtgca ttacgacaag accaaaggag      3660
     tcatgaaact ggagcaaacc gactacatca acacacttct aagaaacttt ggcatggagg      3720
     aatgcagaag tgtcagcaca cccttggaga ccaacatcaa ttctaggtca ggctcaccgt      3780
     caagtgccaa gtttaatcca gctgttgtac cttaccagaa cgcagttaga tcgcttcttt      3840
     atttggtaca agcgacaaga ccagacctcg cacatgcagt cggtgagatc agtcgacaca      3900
     acctggatta cgacgagtca cattgggcca tgatcaagag agttctccgt tacgtacaag      3960
     gaagcaaaca tctcagacta aggtatactc gtgatggaga tgattttatt tcaggctatt      4020
     gtgataccag ctgggctgga gaacaggggg atcgacgatc aacttccggc tacattttta      4080
     tggtacaagg tggtgtcatc tcctggaaca gcagaaggca atcaacagtg gccttgtcat      4140
     ctatcgaagc tgaataccta tcattgtcag cagccgctca ggaggcgtta tggctcggca      4200
     cactcgccag cgaactccga atcagagacg acaaaccgat gccgatttac tgcgacaaca      4260
     agggagccat cgatctgagt aaaaactcac gttttagccc aaggaccaag cacatcgatg      4320
     tccgtcatca gttcattaag gaatatatcg agaaagggga gatcgaggtg atttttatac      4380
     caactacaca acaattggct gatactttga caaaaccagt tggacctgcg aagctaaacc      4440
     aattcatcaa tgcagcgagt atgagagtcg ctgagaagag agaagattga agattttgtg      4500
     aaagatttta ttttacctat ttatgttatt gtttttatat ctatgtatag tctcgcgaca      4560
     tattgtaacc tttgaattgt ataattgagg tggtg                                 4595
//
ID   Copia10-NVi_LTR repbase;    DNA;    INV; 293 BP.
XX
AC   AAZX01001646;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia10-NVi;
KW   Copia10-NVi_I; Copia10-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-293
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1108-1108 (2007).
XX
DR   Genome; AAZX01001646; Positions    8966    9258.
XX
SQ   Sequence 293 BP; 89 A; 59 C; 42 G; 103 T; 0 other;
     tgatataatt tttcgtcaat tcatataatt aaatgtttga atatttcgcg ctctttgata        60
     ctcatatgtt tatagagttg aagcgagtaa tatctaacgg atcgttaacg gttatagttg       120
     tgtatataag ctccgaaacg tttataattc cttcttcttg tcccgaccac cgaccagtca       180
     acaagtatag tttatactcg ccacagtaat cgctctacgt aaataaacaa tatagagtac       240
     aagttaatct tctattttat tcgcaagatc tgcttccctg atccccaaca tca              293
//
ID   Copia11-NVi_I repbase;    DNA;    INV; 4129 BP.
XX
AC   AAZX01012276;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia11-NV;
KW   Copia11-NVi_LTR; internal portion; Copia11-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4129
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1165-1165 (2007).
XX
DR   Genome; AAZX01012276; Positions    9148    5020.
XX
CC   Positions [1572-2075] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..4097
FT                 /product="Copia11-NV_I_1p"
FT                 /translation="MATDAIIRNVVKFDGKNFQQWKFLITAALQANDLLEV
FT                 TNGESKRPGEAARGAAPEAVRETEQVIKAWIKNDAKARYLITAAMEPEQMV
FT                 SLLTCETSMEMWDRLLTIHEQKSASHKLLVSQRFHEYRMNPKDTVVQHVSK
FT                 VQNLASQLLDLGENIPDIVVISKIIASLPTKYRHFRSAWSSVAPERQTIEY
FT                 LQERLVEEESYRDAEDEESSALAVTTRRADKGEISSKQNREKKPRKSKKNI
FT                 KCYVCHEKGHYARECPSRSKPNNREQSENIALIAALESSTNREKGEIAKAN
FT                 ADWEPSSRQKQEIMETDQQDVWFTDSGASAHISHRREWFVDYRLRRDGSTV
FT                 VLGDDRECSVAGEGKVLVERMVDGTWQDAVIENVLHVPEMGRNLYSVGQAT
FT                 SKNIRICFEKDTVKFSRDQKVVAVGVKQSNHIYRMFLRVKPRKLEVNAVSL
FT                 NVWHQRLGHLHERALKHITSKNIVKGVQLNDNEIFFCDDCQFGKAHKLAFK
FT                 QEVQRNLEPGEMFHSDVCGPMKETSLGGARYFLLFKDDATGYRRVFFLKHK
FT                 ADVYDNFVIFEREVNNKFGRPMQILRTDNGKEFANKEMKKYLQSRGIRHEF
FT                 TAPYTPEQNGKVERENRTVVECARTLMCAKNLPGFLWAEAVNTAVYLLNRI
FT                 STSTQKRNKTSYEMWEKKIPDVSHCRIWGSTTFKYEPKQLTTKFDSRSTKM
FT                 VLVGYDSESSNYRLYDPEKKKITVSRHVTFNENSDEGEATKMVADENIFMF
FT                 NDEDGTPDPPQRDRAAREEDPEAADVDDAPENGEQAERREISPPRRPVQRD
FT                 RRLCKRPNRYTADFCAVVVPNSFQEAVQGPNSASWREAIERELTAHRINGT
FT                 WRLVPRTPGIKTIGSKWVFKAIPDGDAGHHKKKARLCALGYMQKEGIDYTE
FT                 TFSPVVRYDSLRMLLSIIAHENLEMRSFDVSAAFLHGKLNEEIYMEVPQRI
FT                 DHNELNTGGKDVVCKLDKALYGLKQAPRCWNNRFKQFLAKFNFRECDADHC
FT                 IFVAMYDKYRVYLCLFVDDGLLACKSDAVLQMILTELKAEFSITTGDASYF
FT                 VGLQISRNRARRSIFINQSVYVREIIERFRMSNAKAVSVPADPNVILQAAE
FT                 EGEAMDGSVPYREAVGCLMFVAMVSRPDIMFAVGTLSKFLNRHNVAHWRAV
FT                 KRVFAYLGGSVDLGIEYKYYLDRYEPVGYSDADYANDPDTRRSTTGYVFCI
FT                 SGGAVTWSSQRQRLVTLSTTEAEYVAASSAAKELCWIRKMLHEIRYQCNSG
FT                 SILWVDNQSAIKIAKNPEYHKRTKHIDIRYHHIREKCMSGEIVIKYIPSEN
FT                 QKADILTKALPRERFAKMRESLGIIKDPDM"
XX
SQ   Sequence 4129 BP; 1338 A; 818 C; 1097 G; 876 T; 0 other;
     ataataggtt atgggcccag gacaagaggt tgaaagataa aaaaaaaaaa aaaagaaaac        60
     gaagagggga aatggcaact gacgcgataa tacgaaacgt cgttaagttc gatgggaaga       120
     attttcagca gtggaagttc ctaatcactg ctgcactcca agcaaacgac ctgctggagg       180
     tcaccaacgg cgaaagcaaa agaccaggcg aagcagctag gggtgccgct ccggaagcag       240
     taagagaaac tgaacaagta ataaaagctt ggataaaaaa tgacgccaaa gccaggtatc       300
     tgataactgc agccatggag ccggagcaaa tggtaagctt actgacttgc gaaacctcga       360
     tggaaatgtg ggatagactt ttgactatcc acgagcaaaa gtcggcgtct cacaagctct       420
     tagtgagcca gagatttcac gagtaccgga tgaacccgaa ggatacggtg gtacaacatg       480
     tgtcgaaggt acaaaatctg gcgagccaac tgcttgactt gggagaaaac atcccggaca       540
     tcgtcgtcat ttcgaagata atcgccagct tgccaaccaa gtatcgacac ttcaggtcgg       600
     cgtggagtag cgttgctccg gaacgacaaa ctatcgagta cctgcaggag agattagtag       660
     aagaggaaag ttatagagat gccgaggacg aagaatcgtc agctctagct gtaactacga       720
     gaagggcaga caaaggtgaa atctcatcaa aacaaaacag agagaagaaa ccacgtaagt       780
     cgaagaagaa tattaaatgt tatgtatgtc atgagaaggg acattacgcg cgtgaatgcc       840
     caagcagatc gaagccgaac aacagagaac agagtgaaaa catagctctg atagcggcac       900
     tcgaatcgtc aacaaaccgc gagaaaggtg aaatagctaa agccaacgca gattgggagc       960
     cgtcgtcgcg ccaaaagcaa gagataatgg aaaccgatca acaagatgtc tggtttaccg      1020
     acagcggcgc gtcggcccac atatcgcaca ggagagagtg gttcgtcgat tatcgtctga      1080
     gaagagatgg tagcaccgtg gtgctcggcg acgatcgcga gtgttctgtg gcgggcgaag      1140
     gcaaagtgct agtcgagcgg atggtagacg gaacttggca agatgcggta attgaaaatg      1200
     ttcttcatgt tcctgaaatg ggcaggaact tgtactcagt agggcaggcc acctcgaaga      1260
     acatcagaat ttgcttcgag aaagacacgg tgaagttttc gagagaccaa aaagtcgtcg      1320
     ctgtcggagt taaacaaagc aatcacatat atcggatgtt tctccgagtg aaaccaagaa      1380
     aacttgaggt gaacgccgta agcctgaatg tctggcatca gagactcgga cacttacatg      1440
     agcgagcgct gaaacacatc acctcgaaaa atatagtgaa aggagttcaa ctcaacgata      1500
     acgagatatt tttctgcgac gactgccaat ttggaaaagc acacaaactg gcgttcaagc      1560
     aagaagtgca aagaaacttg gaaccaggtg agatgttcca ctcggacgtg tgtggcccca      1620
     tgaaggagac gtcattagga ggagccagat atttcctgct cttcaaggac gatgcaactg      1680
     ggtacagacg tgtgtttttc ttgaaacaca aggcagatgt gtacgacaac ttcgtgatct      1740
     tcgagcgaga ggtgaacaat aaattcggca gaccaatgca gatactccga accgacaacg      1800
     gcaaagagtt tgcaaacaag gagatgaaga agtatttgca gtctcgaggc atcaggcatg      1860
     aattcaccgc accatatacc ccggagcaga acggaaaggt cgagagagaa aatcgcaccg      1920
     ttgttgagtg tgcgcgaaca ctcatgtgcg ccaagaatct accagggttc ctgtgggcgg      1980
     aagcggtgaa tacagcggtg tatttgctca acagaatctc aacgtcgaca cagaagagaa      2040
     acaaaacgtc gtatgaaatg tgggaaaaga agatccctga cgtcagtcac tgccgaattt      2100
     ggggctcaac aacattcaaa tacgagccaa agcagctcac gaccaagttt gattcacgat      2160
     ctacgaagat ggtcctggtt ggatacgaca gcgagtcatc caactacagg ctgtacgatc      2220
     cagagaagaa gaagatcact gtgtcacgac acgtgacatt caatgaaaat tctgatgaag      2280
     gagaagcaac aaagatggtc gctgatgaga acatatttat gttcaatgat gaggacggta      2340
     ctccagatcc accgcagaga gacagagcag cgagagaaga agatcccgaa gcagccgatg      2400
     ttgacgacgc tcctgaaaat ggagaacaag cagaaaggag agagatatcg cccccacgtc      2460
     gtccggttca gagagacaga agactgtgta aaaggccaaa caggtataca gctgatttct      2520
     gtgctgtcgt tgtaccaaac tcttttcagg aagccgtaca ggggccaaac agtgccagtt      2580
     ggagagaagc catagagaga gaactgactg ctcatcgcat caatggcact tggaggttgg      2640
     taccgagaac accgggaatc aaaaccattg gttcgaaatg ggtgttcaag gccattcctg      2700
     atggtgatgc ggggcatcac aagaagaagg ctcgactctg tgctttaggg tacatgcaaa      2760
     aggaagggat tgattacacg gagacctttt cacctgtcgt caggtacgac tctctcagaa      2820
     tgctgctgtc gatcatcgca cacgagaatc tggagatgcg ctcattcgac gtgagtgcgg      2880
     catttcttca tggaaagctc aacgaggaaa tctacatgga ggtaccgcag cgaatcgacc      2940
     acaatgaatt aaatactgga ggtaaagacg tagtgtgtaa gttagataaa gccttgtatg      3000
     ggttaaagca agcacctcgg tgctggaaca acaggttcaa acaattttta gctaaattca      3060
     attttcgcga atgcgatgcg gaccactgca tatttgttgc aatgtacgat aagtaccgag      3120
     tatatttgtg tctctttgtc gatgatggat tgctagcatg caagtccgat gcggtgttgc      3180
     aaatgatttt aactgaactg aaggcagaat tttctataac aacaggagac gccagttact      3240
     ttgtcgggct tcagatcagt cgtaatcgtg cgagaaggag catatttata aatcagagtg      3300
     tgtatgtgag agaaatcata gagagattta gaatgagtaa cgcgaaggca gtaagcgtgc      3360
     cggccgaccc caatgtgatt ctgcaagcgg cagaagaggg tgaagctatg gatggaagcg      3420
     tgccctatag agaagcggtc ggatgcttaa tgtttgtggc gatggtctca agaccagata      3480
     taatgttcgc agtagggact ctgtcaaaat ttctcaatag acacaatgtc gctcactggc      3540
     gcgcagtcaa gcgtgtattt gcatacttag gcggtagtgt agatttaggg atagaatata      3600
     aatactattt agatcggtat gaaccagtgg ggtattctga cgcggactac gcgaatgatc      3660
     cagacacgag aaggtcaacc actggctatg tgttttgtat atcaggtgga gcggttacat      3720
     ggtcgtctca gagacagcgt ttagtcacgt taagtacaac ggaagctgaa tatgtcgccg      3780
     cttcgtcagc agctaaagaa ctgtgctgga ttcgtaaaat gttacatgag atcagatatc      3840
     aatgtaattc tgggtcaata ttgtgggtag acaaccaaag tgcgatcaaa atagcgaaaa      3900
     atccagagta tcacaaacgc accaaacaca ttgatattcg atatcatcat attcgagaaa      3960
     aatgtatgtc gggagaaatt gtaataaaat atataccgtc ggaaaatcaa aaagcagaca      4020
     tactaaccaa agcgttgcct cgcgagagat ttgcgaaaat gagagagagt ttggggataa      4080
     ttaaagatcc tgatatgtaa tagagcaggt atagaaacgg gaggagtat                  4129
//
ID   Copia11-NVi_LTR repbase;    DNA;    INV; 320 BP.
XX
AC   AAZX01012276;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia11-NV;
KW   Copia11-NVi_I; Copia11-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-320
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1166-1166 (2007).
XX
DR   Genome; AAZX01012276; Positions    5019    4700.
XX
SQ   Sequence 320 BP; 89 A; 78 C; 73 G; 80 T; 0 other;
     tgttgtaatg aaaagaagtt tcaatactgc tcatgcgtgc acagtaggcg cgaaagtatt        60
     taagagtccg tgcgagagca agagagaccg cgatcgaact gtatatccgt ctctctttca       120
     cagcgcgtct attgctgtct ctttcttatc gcgcgtatat gctcggggac cgccaaagcg       180
     atggggagat agtcacgagc ctttgccgag gtaggacagc taacgaagca tttcaagaag       240
     agaatgaacc ttatactact gcacacaact agacttgatt ttctttgtcc acaccacaac       300
     gtcctcacca gaattccaca                                                   320
//
ID   Copia12-NVi_I repbase;    DNA;    INV; 8827 BP.
XX
AC   AAZX01023343;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia12-NV;
KW   Copia12-NVi_LTR; internal portion; Copia12-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8827
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1162-1162 (2007).
XX
DR   Genome; AAZX01023343; Positions   23037   14211.
XX
CC   Positions [4884-5417] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           260..3250
FT                 /product="Copia12-NV_I_1p"
FT                 /translation="MLKATKIGTVKTYFKNYYYQKYVDIKNVYYVKGIKQN
FT                 LMSLAKITENYTVLATKDIAKIFNKSRELIAVANKKENLFYMKSFVSKRES
FT                 NEMYVNSLKLTDKEKWHRALGHVNFQYLNKLVTNKLVEGLPEKIENVEMKC
FT                 ANCIESKMANVPFENSRSKTTEILELIHTDLNGPHNTTGYGGEKYFLTFVD
FT                 DYSKCTRIFCIKSKAETASCLKEFVNLVENKFNKKVKKLRCDNGKEYLNKE
FT                 IYDFVKSKGIELLPCPPYVHELNRVAERYNRSAMDMGRCLMREAKIHRRYW
FT                 PEIIKTVAYLKNRTIANTAENKTPFEIFFGKKPNVDNLKIYGSRVFVRVPE
FT                 TLRKSKWDDKAQLGVLVGYVENGYRVLVNGRIIHARHVQVVEEKTQLICLE
FT                 KLDDEKDRDLENSESENKGNEILENESKIDKYDVNSNRKNPLISTQTFGES
FT                 RDNELNSDIAENENSNLKVQRKSNRKKSPVNRYGNPVTHFIYVNYIDANIP
FT                 NTFEEALNSNEYKQWKIAMDSEINSLNKNNTWQIVERPKDKRVIDVKWVYK
FT                 RKNNNVYKARLVVRGFQQREHIENVYSPVGKKQTLKILLSYSCKNNLFIEQ
FT                 MDVETAFLNGNVTTEVYINEPKGYETGDNKVCKLQKALYGLRESPRAWYNC
FT                 FNEYIEKLNFMRSNYDYCLYVNNTSKDPIYILVFVDDLLICCKDKDKINKV
FT                 KASLMQRFAMKDMGKISQYIGIDIDYSNDRSKMTLSQTKYIESLAIKYNLE
FT                 NAKLYNTPMESNLKLEQASEIDENIKYRNLIGELLYISTGTRPDISYSVNY
FT                 LSRYQNCYNQTHYKYAMRILKYLYKTKDLKLTYCDNVNTEILDCMVDSDCA
FT                 GDNVDRKSTTGFVIRLFGNLIFWKTHKQSTVTKCSTFAEYTAMSEAVTEVL
FT                 FVRNLLCESFDVNFENPINIYEDNSGAIAIPKYGNFTKNSKHIEVQYHYIN
FT                 ENYENGIIDIVKIDSNSNLADMLTKSLDKTKFIKNRQALNLA"
FT   CDS           4161..7085
FT                 /product="Copia12-NV_I_2p"
FT                 /translation="MFSWLKHRVKQENELDATDIELTKKIRNKIRKIFLKE
FT                 IKKIVVLKNQVYENIRVKEEELKMTDSGCTDHIITNDKFFEKCVDLKNPVD
FT                 VKLPDGKMLKATKIGTVKTYFKNYYNQKYVDIKNVYYVKGIKQNLMSLAKI
FT                 TENYTVLATKDTAKLFNKSRELIAVANKKENLFYMKSFVSKRESNEMCVNS
FT                 VKLTDKEKWHRALGHVNFQYLNKLVTNKLVEGLPEKIENVEMKWANCIESK
FT                 MANVPFENSRSKTTEILELIHTDLNGPHNTTGYGGEKYFLTFVDDYSKCTR
FT                 IFCIKSKAETASCLKEFVNLVENKFNKKVKKLLCDNGKEYLNKEIYDFVKS
FT                 KGIELLPCPPYVHELNGVAERYNRSAMDMGRCLMREAKIHRRYWPEIIKTV
FT                 AYLKNRTIANTAENKTPFEIFFGKKPNVDNLKIYGSRVFVRVPETLRKSKW
FT                 DDKAQLGVLVGYVENGYRVLVNGRIIHARHVQVVEEKTQLICLEKLDDEKD
FT                 RDLENSESENKGNEILENESKIDKYDVNSNRKNPLISTQTFGESRDNELNS
FT                 DIAENENSNLKVQRKSNRKKSPVNRYGNPVTHFIYVNYIDANIPNTFEEAL
FT                 NSNEYKQWKIAMDSEINSLNKNNTWQIVERPKDKRVIDVKWVYKKKNNNVY
FT                 KARLVVRGFQQREYIENVYSPVGKMQTLKILLSYSCKNNLFIEQMDVETAF
FT                 LNGNVTTEVYINEPKGYETGDNKVCKLQKVLYGLRESPRAWYNCFNEYIEK
FT                 LNFMRSNYDYCLYVNNTSKDPIYILVFVDDLLICCKDKDKINKVKASLMQR
FT                 FAMKDMGKISQYIGIDIDYSNNRSKMTLSQTKYIESLAIKYNLENAKLYNT
FT                 PMESNLKLEQASEIDENIKYRNLIGELLYISTGTRPDISYSVNYLSRYQNC
FT                 YNQTHYKYAMRILKYLYKTKDLKLTYCDNVNTEILDCMVDSDYAGDNVDRK
FT                 STTGFVIRLFGNLIFWKTHK"
XX
SQ   Sequence 8827 BP; 3613 A; 1112 C; 1587 G; 2515 T; 0 other;
     acagggcaac tattcatctg aatcatggat aacgcaggta tgccacgact cgaacaattc        60
     ttatacctac cctcgggaaa agtataagaa ttataaaaca agtgaagtaa atcatgtaac       120
     aggttatagc gaaaattgta gcgaaatcga ttggttatta gatagtggtt gcacagatca       180
     tattataaca aatgataaat tctttgaaaa atgtgtagat ttgaagaatc ctgttgatgt       240
     aaaattacca gatggtaaaa tgttaaaagc aaccaaaata ggtactgtta agacttattt       300
     taaaaattat tattatcaaa aatatgttga tataaaaaat gtctattacg ttaaaggtat       360
     taaacaaaat ttgatgagtt tagcaaaaat aactgaaaat tatacagtat tagcaactaa       420
     agatattgca aaaatattta ataagtctag agagttgata gctgtagcaa acaaaaagga       480
     aaatttgttt tatatgaaaa gttttgtatc aaaaagagaa agtaatgaaa tgtatgtaaa       540
     ttcactaaaa ctaactgaca aagaaaaatg gcatagggca ttaggccatg taaactttca       600
     atatttaaat aaactagtaa ctaataaatt agttgaagga ttgccagaaa aaattgaaaa       660
     tgtcgaaatg aaatgcgcaa attgtataga aagcaaaatg gccaatgtac cttttgaaaa       720
     tagcagatca aaaacaactg aaattctaga attgattcat actgatttga atggtccaca       780
     taacacaact ggttatggtg gagaaaaata tttcctaact tttgttgatg actatagtaa       840
     atgcacaaga attttttgta ttaaaagtaa agctgaaaca gctagttgtt tgaaagaatt       900
     tgttaattta gtagaaaata aattcaataa aaaggttaaa aaattacgat gtgataatgg       960
     caaagaatat ttaaataagg aaatttatga ctttgtaaaa tcaaaaggaa tagagttatt      1020
     gccatgccca ccctacgtcc atgaattaaa tcgagtagcg gagagatata atagatctgc      1080
     aatggatatg ggtagatgtt taatgcgaga agctaaaatt cataggcgtt actggcccga      1140
     aatcataaaa acggtcgcgt atttaaaaaa ccgtacaatt gcaaatacag cggaaaataa      1200
     aactcctttc gagatattct ttggtaaaaa acctaatgta gataacttaa aaatttatgg      1260
     tagtcgtgtc tttgtaagag taccagaaac tttacgaaaa agcaaatggg acgataaagc      1320
     acaattaggc gtattagtag gttatgtaga aaatggttat agagtcttag taaatggtag      1380
     aataattcat gctagacatg ttcaagtagt tgaagaaaaa actcaattaa tttgtttaga      1440
     aaaacttgat gatgaaaaag atagagattt ggaaaatagc gaatctgaaa ataaaggaaa      1500
     tgaaatacta gaaaatgaat ccaaaattga taaatatgat gtaaattcaa atagaaaaaa      1560
     tcctcttatc tctactcaga ccttcgggga aagtagagat aacgaattaa actctgatat      1620
     tgctgaaaat gaaaattcaa acttaaaagt gcaaagaaaa tcaaatagaa agaaaagtcc      1680
     tgtaaataga tatggaaatc ctgtaactca ttttatctat gtaaattaca ttgatgcaaa      1740
     tataccgaat acatttgagg aggcgttaaa ctcaaatgaa tataaacaat ggaaaattgc      1800
     aatggactca gagataaata gtctaaacaa aaataatact tggcaaattg ttgaaaggcc      1860
     aaaagacaaa agggtaattg atgtaaaatg ggtctataaa aggaaaaata acaatgttta      1920
     taaagcgaga ttagttgtaa gaggatttca acaaagagaa cacattgaaa atgtttattc      1980
     accagtaggc aaaaagcaaa cattgaaaat tttactgtct tacagctgta aaaataattt      2040
     attcatagaa caaatggatg tagagacagc tttcttaaat ggtaatgtaa caaccgaagt      2100
     atatataaat gaaccgaaag gttatgagac tggtgacaat aaagtttgca agttgcaaaa      2160
     ggcattatac ggattgcgag aaagtcctag agcctggtat aattgtttca acgaatatat      2220
     tgaaaaattg aatttcatga gaagtaatta cgattactgt ctatacgtaa ataatacaag      2280
     taaagatcca atatatatac tagtctttgt agatgatctc ttaatttgtt gcaaagacaa      2340
     agataaaata aacaaagtta aagctagtct aatgcaaagg tttgcaatga aagatatggg      2400
     caaaattagc caatacattg gtatagatat agattacagt aatgatagaa gtaaaatgac      2460
     attaagtcag actaagtata ttgaatcttt agctataaaa tataatttag aaaatgccaa      2520
     actgtataat actccaatgg agtccaacct aaaactagaa caagctagtg aaattgatga      2580
     aaatataaaa tacagaaatt taattggcga actattatat ataagtacag gcacaaggcc      2640
     agatatatct tatagtgtaa attacctaag tcgttaccaa aactgttata accaaacaca      2700
     ttataaatat gcgatgcgaa ttcttaagta tttgtacaaa acaaaagatc tcaaactaac      2760
     ttactgcgac aatgttaata ccgaaatatt agactgtatg gtagattctg attgtgcagg      2820
     tgataatgta gatagaaaat ctacaacagg ctttgtaatt agattgtttg gaaatttaat      2880
     tttttggaaa acgcataaac aaagtactgt aacaaaatgt tctacttttg cagaatacac      2940
     tgctatgtca gaagcagtga ctgaagtttt gtttgttagg aatctattat gtgaatcttt      3000
     tgatgtaaat ttcgaaaacc cgattaatat atacgaggat aactcaggtg caattgcgat      3060
     tccaaaatat ggtaacttca caaaaaattc aaagcacatc gaagtgcagt atcattatat      3120
     aaatgaaaat tatgaaaatg gaataattga cattgtaaaa atagattcaa attcgaactt      3180
     agctgatatg ttaacaaaaa gtctcgataa gacaaaattt ataaaaaata gacaagcatt      3240
     gaacttggct tgaacttggc ttgaacttgg tcaaatacat tgaacttggc ctgaacttgg      3300
     caacatacca tggaaatgta ttatatatct catcaagatt ataaacttaa aaaggcgtgt      3360
     tgtaatatag taagtattat aatcttgatt ataagtacca aaacggtaca cgtcgcgcca      3420
     tctattggtc gacgacgttt tcgtgcagtc agacgagctc acgagagagt aagtgtaccg      3480
     cgcatgcctc gcgactatac tctaagcgcc tattacgtac tatactatac tccgtgtgta      3540
     gagccagact atgctgttct gtactctaca ctctcttgcc tgtaagactc cgatgtgatc      3600
     ggacgtgccg actactgggc tctcaagcct aactactttt tcaatatata ttattattat      3660
     taacctcact gtttattatt tattccacca ctccaacatg gtagcagagc cctggaattt      3720
     tcttttcaat tttgcattaa ccttcggaga aatgcaaaat tgaggggggt aaaaagtgag      3780
     gtaagaagaa agccacgtgg aaaagaagtt aacggttatt gttaacaaag tgaatcgcac      3840
     agtgaaaaat tgagcagtga aattaaagga gaaagtttct cagaaagatt atatgcttgt      3900
     ggagcattga aatttaaatt ttgtgtcgaa acggccgtcg aaaaaaagaa aaatttcaag      3960
     tgaagattaa ccagtcaaga aaaggttcaa gtcaaatata tatgctcagt gacaaagatt      4020
     aagttgtcag gtattaaaca ataagaagaa ttttgaaaat taataaagat tcaagtgcga      4080
     tgtcaataga ttaaagtcgg caagtgaaaa acgtggtaac gtgctagtac agagcacgtg      4140
     gcaattttga ggttaagcac atgttctcgt ggcttaaaca tagagtaaaa caagaaaatg      4200
     aattagatgc tacagatatt gaattaacaa agaaaataag aaacaagatt agaaaaatat      4260
     ttttaaaaga aatcaagaaa attgttgtat tgaaaaatca agtgtacgag aatatacgtg      4320
     tcaaagaaga agaattaaaa atgacagata gtggttgcac agatcatatt ataacaaatg      4380
     ataaattttt tgaaaaatgt gtagatttga agaatcctgt tgatgtaaaa ttaccagatg      4440
     gtaaaatgtt aaaagcaacc aaaataggta ctgttaagac ttattttaaa aattattata      4500
     atcaaaaata tgttgatata aaaaatgtct attacgttaa aggtattaaa caaaatttga      4560
     tgagtttagc aaaaataact gaaaattata cagtattagc gactaaagat actgcaaaac      4620
     tatttaataa atctagagag ttgatagctg tagcaaacaa aaaggaaaat ttgttttata      4680
     tgaaaagttt tgtatcaaaa agagaaagta atgaaatgtg tgtaaattca gtaaaattaa      4740
     ctgataaaga aaaatggcat agggcacttg gccatgtaaa ctttcaatat ttaaataaac      4800
     tagtaactaa taaattagtt gaaggattgc cagaaaaaat tgaaaatgtc gaaatgaaat      4860
     gggcaaattg tatagaaagc aaaatggcga atgtaccttt tgaaaatagc agatcaaaaa      4920
     caactgaaat tctagaattg attcatactg atttgaatgg tccacataac acaactggtt      4980
     atggtggaga aaaatatttc ctaacttttg ttgatgacta tagtaaatgc acaagaattt      5040
     tttgtattaa aagtaaagct gaaacagcta gttgtttgaa agaatttgtt aatttagtag      5100
     aaaataaatt caataaaaag gttaaaaaat tactatgtga taatggcaaa gaatatttaa      5160
     ataaggaaat ttatgacttt gtaaaatcaa aaggaataga gttattgcca tgcccaccct      5220
     acgtccatga attaaatgga gtagcggaga gatataatag atctgcaatg gatatgggta      5280
     gatgtttaat gcgagaagct aaaattcata ggcgttactg gcccgaaatc ataaaaacgg      5340
     tcgcgtattt aaaaaaccgt acaattgcaa atacagcgga aaataaaact cctttcgaga      5400
     tattctttgg taaaaaacct aatgtagata acttaaaaat ttatggtagt cgtgtctttg      5460
     taagagtacc agaaacttta cgaaaaagca aatgggacga taaagcacaa ttaggcgtat      5520
     tagtaggtta tgtagaaaat ggttatagag tcttagtaaa tggtagaata attcatgcta      5580
     gacatgttca agtagttgaa gaaaaaactc aattaatttg tttagaaaaa cttgatgatg      5640
     aaaaagatag agatttggaa aatagcgaat ctgaaaataa aggaaatgaa atactagaaa      5700
     atgaatccaa aattgataaa tatgatgtaa attcaaatag aaaaaatcct cttatctcta      5760
     ctcagacctt cggggaaagt agagataacg aattaaactc tgatattgct gaaaatgaaa      5820
     attcaaactt aaaagtgcaa agaaaatcaa atagaaagaa aagtcctgta aatagatatg      5880
     gaaatcctgt aactcatttt atctatgtaa attacattga tgcaaatata ccgaatacat      5940
     ttgaggaggc gttaaactca aatgaatata aacaatggaa aattgcaatg gactcagaga      6000
     taaatagtct aaacaaaaat aatacttggc aaattgttga aaggccaaaa gacaaaaggg      6060
     taattgatgt aaaatgggtc tataaaaaga aaaataacaa tgtttataaa gcgagattag      6120
     ttgtaagagg atttcaacaa agagaataca ttgaaaatgt ttattcacca gtaggcaaaa      6180
     tgcaaacatt gaaaatttta ttgtcttaca gctgtaaaaa taatttattt atagaacaaa      6240
     tggatgtaga gacagctttc ttaaatggta atgtaacaac cgaagtatat ataaatgaac      6300
     cgaaaggata tgagactggt gacaataaag tttgcaagtt gcaaaaggta ttatacggat      6360
     tgcgagaaag tcctagagcc tggtataatt gtttcaacga atatattgaa aaattgaatt      6420
     tcatgagaag taattacgat tactgtctat acgtaaataa tacaagtaaa gatccaatat      6480
     atatactagt ctttgtagat gatctcttaa tttgttgcaa agacaaagat aaaataaaca      6540
     aagttaaagc tagtctaatg caaaggtttg caatgaaaga tatgggcaaa attagccaat      6600
     acattggtat agatatagat tacagtaata atagaagtaa aatgacatta agtcagacta      6660
     agtatattga atctttagct ataaaatata atttagaaaa tgccaaactg tataatactc      6720
     caatggagtc caacctaaaa ctagaacaag ctagtgaaat tgatgaaaat ataaaataca      6780
     gaaatttaat tggcgaacta ttatatataa gtacaggcac aaggccagat atatcttata      6840
     gtgtaaatta cctaagtcgt taccaaaact gttataacca aacacattat aaatatgcga      6900
     tgcgaattct taagtatttg tacaaaacaa aagatctcaa actaacttac tgcgacaatg      6960
     ttaataccga aatattagac tgtatggtag attctgatta tgcaggtgat aatgtagata      7020
     gaaaatctac aacaggcttt gtaattagat tgtttggaaa tttaattttt tggaaaacgc      7080
     ataaataaag tactgtaaca aaatgttcta cttttgcaga atacactgct atgtcagaag      7140
     cagtgactga agttttgttt gttaggaatc tattatgtga atcttttgat gtaaatttcg      7200
     aaaacccgat taatatatac gaggataact caggtgcaat tgcgattgca aaatatggta      7260
     acttcacaaa aaattcaaag cacatcgaag tgcagtatca ttatataaat gaaaattatg      7320
     aaaatggaat aattgacatt gtaaaaatag attcaaattc gaacttagct gatatgttaa      7380
     caaaaagtct cgataagaca aaatttataa aaaatagaca agcattgaac ttggcttgaa      7440
     cttggcttga acttggtcaa atacattgaa cttggcaaca taccatggaa atgtattata      7500
     tatctcatca agattataaa cttaaagagg cgtgttgtaa tatagtaagt attataatct      7560
     tgattataag taccaaaacg gtacacgtcg cgccatctat tggtcgacga cgttttcgtg      7620
     cagtcagacg agctcacgag agagtaagtg taccgcgcat gcctcgcgac tatactctaa      7680
     gcgcctatta cgtactatac tatactccgt gtgtagagcc agactatgct gttctgtact      7740
     ctacactccc ttgcctgtaa gactccgatg tgatcggacg tgccgactac tgggctctca      7800
     agcctaacta cttttcaata tatattatta ttattaacct cacgtgttta ttatttatgc      7860
     acactccaca tgtagcagag cgtgaaactt acttttcaat ttgcattaac cttcggggaa      7920
     atgcaaaaat gaggggggta aaagtgaggt aagaagaaag ccacgtgaaa aagaagttaa      7980
     cggttattgt taacaaaagt gaatcgcaca gtgaaaaatt gagcagtgaa attaaaggag      8040
     aaagtttctc agaaagatta tatgcttgtg gagcattgaa atttaaattt tgtgtcgaaa      8100
     cggccgtcga aaaaaaaaag aaaaatttca agtgaagatt aaccagtcaa gaaaaggttc      8160
     aagtcaaata tatatgctca gtgacaaaga ttaagttgtc aggtattaaa caataagaag      8220
     aattttgaaa attaatatag attcaagtgc gatgtcaata gattaaagtc ggcaagtgaa      8280
     aaacgtggta acgtgctagt acagagcacg tggcaatttt gaggttaagc acatgttctc      8340
     gtggcttaaa catagagtaa aacaagaaaa tgaattagat gctacagata ttgaattaac      8400
     aaagaaaata agaaataaga ttagaaaaat atttttaaaa gaaatcaaga aaattgttgt      8460
     attgaaaaat caagtgtacg agaatatacg tgtcaaagaa gaagaattaa aaatgacaag      8520
     acaagctaaa gttgaagata ttatgatacc cgtgtttgat ggtgcaaatt actccagttg      8580
     gaaaataaga ttgatgattt tattagaata taaagagtgt aacgaacctg caactagtaa      8640
     aataactgct gcatacaaag ataaagaaga tgaatggcag aaaaaagatt taaaagcaag      8700
     aacgataata ataagcactg tatccgataa acaattagaa tacattggtg aatgtaaatc      8760
     agcatttgac atggtggaaa aattcgataa aatgtactcg acgcaatcca cgtcactaca      8820
     aataatt                                                                8827
//
ID   Copia12-NVi_LTR repbase;    DNA;    INV; 508 BP.
XX
AC   AAZX01023343;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia12-NV;
KW   Copia12-NVi_I; Copia12-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-508
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1163-1163 (2007).
XX
DR   Genome; AAZX01023343; Positions   14210   13703.
XX
SQ   Sequence 508 BP; 195 A; 86 C; 126 G; 101 T; 0 other;
     tgcagaggaa agctggaaga agtaaagttg aagaattttg ataaattaga cgatttttcg        60
     cagaattcga aaaatctgtg aacgagttca aggcggctgg tggaaaacta gatgaaacag       120
     agaagatgag gtatttaata cgagcactac caccaagcta cagctacata ggagacttca       180
     ttgatgtcat tccagaagat taaaggacag tagactatgt caaatcgaaa attaaagaaa       240
     aaaattatgc aaaaaacgat tctgataaaa agagtaatgt aagtactttt acagccaagt       300
     tcgaaggcaa atgttacaac tgtggaaaag ttggacatta caaaaatgca tgcacgagac       360
     caccacagca gagtaaccga ggacgaggtg ctcaatccag tcaaggtcag cgaggtcatc       420
     agagaggcta caacagaggt ggaaactaca gaggtcgtgg ccgaggcaga ggacaaggcc       480
     aacccagagg tgacttttca agcgagca                                          508
//
ID   Copia13-NVi_I repbase;    DNA;    INV; 7069 BP.
XX
AC   AAZX01023252;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia13-NV;
KW   Copia13-NVi_LTR; internal portion; Copia13-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7069
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1159-1159 (2007).
XX
DR   Genome; AAZX01023252; Positions    8226    1158.
XX
CC   Positions [4312-4821] - Integrase core
CC   'TATT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2104..6987
FT                 /product="Copia13-NV_I_1p"
FT                 /translation="MNQNFERFTTKISGDVQQLMRSVDSLKLRGQDGQAVK
FT                 DWQEKPTLSANNKPSIVSCTRPAEPIKLHPRGRGRGFRPANRNPLTLLAPG
FT                 PRELGPAEPRCSSTLVADSYEWNEKNEVRREQSPYKDWRVESAERLGIALD
FT                 DLNVSRRFSDQDLTQLNKLNLFKSMNSGNTSINDAKLKQINITRMYKLKLD
FT                 SEFAPFEDFLFSELKSRKLFYVFEKNNQSLICPDELEHDKNIIREIILNRI
FT                 DDKYHLYTMNIKDPVELLDKIKEIKKNELRINAHTAQKRLFNLKLNKDKET
FT                 AFNFCLRFEDLVRKYESNEGIEKMSDTAKKSLLFNAVEQAYPEIITAENVA
FT                 SHGTGRKYTYNELKDLIFQIDNSKQRTPEKSALLGFAEERNRSSDERSKSR
FT                 ERPNKRCERCGSTAHLSKDCKHDEPKCFNCNKFGHIAVDCSEPRKEPPRKR
FT                 ATDRNRSISPKRKQRREHSRSRSKSPFRRPGTPAKGTTNTDSVCMNVSLNE
FT                 WDDETQKFIVDSGATDHMTNSKLILTQLHEKTERVIGCANKDKRSNIIATN
FT                 QGQVKFELSYGNVIKLDNVVYAENLRKNLLSLKRFTDQGLCVYLDNKTINV
FT                 YEPNTREKILEGKFENPFWIIDLKPKLDNIQKMPSGALIAHESNEKIVKKK
FT                 VTFADEKSVIDSANQRKENGDESTVINTINLWHIRLGHTALNKVKLLKGLY
FT                 PDIKQFRENDHGVCLKDCEICKVAKMNRPKFDNNKEMAKKPLQRVSADTMG
FT                 PITPATHPKGCRFIVVLVDNYSRFAMAYPVKQKSDAAECIDDFVVKCRNIC
FT                 GRDEKFCYLDCDQGTEFTSGKTQKVLDKYGAELRTICPYTPQLNGIAERYN
FT                 QTIQKITRALMYDSRLPANAWDLAVKAAAYLYNLTPHKSIGLKSPLLMINP
FT                 ESKAYINQIKRFGCVAFTKVQGQQETKFDKLSNKTVLVGYTDTGYLLLNPE
FT                 DGKVYESRNVQFIESKVFGDIYKPEDIKNWTITNDTLNKETWLFEFDEESP
FT                 DQPEVVIKAPKKKGRPRKENQKTAMKPISKINHRPVTRKQTQSKKIVSAEK
FT                 AQGETEGLNIYDPDALMTLGTSESEKMQDKIEGLSEYELYTLLTGINGDPK
FT                 SYREAVSSPEADRWQEAINKEREALQKNRVYEVVSRTSCDGKKLNILDSRW
FT                 VFKRKDSGTKYPDYKARIVIRGFKDSNLYDLCETYAPVSRLALVRAVLTTA
FT                 NKHDYVLWQLDVKAAFLHSPIKKDIFLEIPDGFEEYENQKQTKVWKLHKSL
FT                 YGLKTSPKNWNEYFSEFAKQLKFQANSRDPCLFIYAEEKSRIIMLLYVDDI
FT                 LLTGNDEPKMREIQKELSKKFDMKFLGEPKEFLGITITRNSKERTIKLDQI
FT                 KFINKMQTKFGYAQAKGQSTPMVTNQVLNRQRKQREEESTNDKAINQRGYR
FT                 EVVGSLMYLMSGTRPDLAYAVNMLSRHQQNPTEHDWKMVTRVFKYIAYSKN
FT                 WQLTYKGLKDGMETFSDASFADCKDSLTTSGHVVTLYGDAIAWRTHKQSYV
FT                 ALSTCQAEYVAMGDACRESISISLSLKVIPNMTYFPIILWCDNKAAVACTK
FT                 MDGSNKLRHMAGVYEDYVKQCVKLHYVKIEWIESKEQRADIFTKPLPSDSH
FT                 NKLSRLLLGN"
XX
SQ   Sequence 7069 BP; 2538 A; 1432 C; 1602 G; 1497 T; 0 other;
     ggttatgggc ccagcacgct tccactgcgc gaattagtga aaagtgacac gaaaaaaaaa        60
     aaaatagaag aaaagccaag agaagtcgag acgagttgac acctgtacaa agacacgaga       120
     acgacctaag ctgagaaaca aaggcaaaag tcacgatggc cggaaaatcc tacaaatggg       180
     caaacccgca aactgcacgt aagtacgcat aaaaataaaa acgtgcttat gaaactcgtg       240
     aagtaaaatc agcggtacgc aagtgtataa gaaaagtgaa gtgaaaaaat aaaaatcgcg       300
     agataaaaaa aaaccgcatt agaaaagaaa aggcgcgaaa atcgcggaaa agagaaaggc       360
     gcgaatcagt gttgcatcag ttcggcttgt cagaactcga aaatccgaac gcgcttaaac       420
     aaagaaagtc gaccaaaaca aaaacgcatt tccgagaagt tcaaacgaac agaaacgcgc       480
     ggtaaaaaaa ttcccggtac gaagcaacag gcgaaagaaa ggggggttgc taggcaaccg       540
     agccaacatg gccgcctcat ctctctcctg cacgtaagct atacggaacg gagggagagc       600
     cgccgttgcc gcgctctcgg ctcacgacga cgacgcgcaa gttcaggcgc acgcagaaaa       660
     agacgacgct agtttaacct ggctcgtaat aagttaacac gcgcgtgcat gaaaacggag       720
     ggagagttgc ggtcattaca accacacgta gtggaaacga tacacggacg cgcacgcata       780
     catacgtgca caaaaagttc gcgctgagtc aactcaaacg caaagcgaag tcaatacaag       840
     attgtgcgca agcgcacacg aattcacgtg accactcact tgttgcgcgg caatttttga       900
     atttcttaaa cgcacaccta tgcatctagt gcaagtctgc ctgcatgctg cactgtttac       960
     agacaccgcg caggtggggc tgctgatgca tgggtaaact aagcaaccat ttaacgtatt      1020
     aaactagcag aaaatcatct ataaagaaat ttaacgcgat aaacgcgaac gtcggctttc      1080
     gcatctagtg taagtctgcc tgcgagctgc actgtttaca gacaccgcgc aggtggggct      1140
     gctggtgcgc gagctcactc tgcaataaat taagcgaaga attaattcaa cacaacgact      1200
     ctggtttatc aaaataaatt aagtttgaat attaattaca aaatctttcg acagcacgta      1260
     gcacaagtac tgactgggat gacatacgcg ccaagattct ggagtactac gacctgaagg      1320
     acaaagaacc aaatgagagt ttctatcttc aactctacgg cggaggcgtt tggttaatga      1380
     attctaggga cgaaacactc caactaggta atgaagtaaa gtcataaata acaatattta      1440
     tatgtaagtc tacacttgta cggaaagttt gacgggctac tagccaacgt aacgtacgac      1500
     acgaagtctg tgtggatctg tgagaggttt aacacgaacc cacgaatgtg acttggtacg      1560
     tgcgcacgta cagatactta gtcagtgtcc cacgctcaaa aactagaccc tcacacagat      1620
     ctgccaaacc tgctctcgtg cttagtgggt ctcggactgt gggagccgtg cttaggcaca      1680
     cattccgcaa aaagagacta agtcggtttg ggaactttgt cgaaaagtga ctggaccgac      1740
     agcaaggtgg cccgatactt gtgcacaaag tatagggagc tttgcagggg tatcctctca      1800
     accgcagact aacgtttttt gtatatttac agacatgaac atcctcagtt tggaagaagc      1860
     agccagactc ctgggaagtg ttgaaagcta cagaggatcg agtggtaggg ttgagaggac      1920
     ccgtaagcca ctacagcgac gcagggagag caggagccac tacgtccacg cccagggatg      1980
     acgaccagac atacagcatg aatgagatca ccaagctgtt gcgtgagagc accctggctc      2040
     aagtcaagct cagcgaaagg ctggtagaag gaatgaagtc ccctcgtgga ggagaatgct      2100
     aagatgaacc aaaacttcga aaggttcaca accaagatca gcggagatgt acagcaactg      2160
     atgaggtccg ttgatagtct gaagctcaga gggcaggatg gacaggcagt aaaagattgg      2220
     caggagaagc caactctttc agccaacaac aagccaagca tcgtcagctg tacacgcccg      2280
     gcagaaccga tcaagctgca tccacgagga cgcggacgtg gctttcgacc agccaaccgc      2340
     aatccgctca cgctcttggc tcctggacca agggagctcg gacctgctga acccaggtgc      2400
     tcgtccacac tagtggccga ctcgtacgag tggaacgaga aaaatgaagt aaggagagaa      2460
     cagtcgccat ataaagattg gcgcgttgaa tccgccgaac gtcttggaat cgcgctcgac      2520
     gatttgaatg taagtagacg tttttctgat caagacttaa cgcaactgaa taagctgaat      2580
     ttgttcaagt caatgaactc aggtaacacg agtataaatg acgcaaaatt gaaacagatt      2640
     aacatcacgc gaatgtacaa gttaaaatta gattcggaat ttgccccctt tgaggatttc      2700
     ttattctcag agctaaagtc gcgaaaactg ttctacgtct tcgaaaagaa caatcaaagt      2760
     ctgatctgtc cagatgaact cgaacacgat aagaatatca tacgcgagat aattctgaac      2820
     agaattgatg ataagtatca cctatacacg atgaacataa aagatccagt tgaattactg      2880
     gataagatta aagaaattaa aaagaatgaa ttgagaatta atgctcatac agcccagaaa      2940
     cgactcttca acttaaagct caacaaagat aaagaaacgg cctttaactt ctgcttgagg      3000
     tttgaagacc tcgtaagaaa gtatgaaagt aatgaaggca tagaaaaaat gagcgatacg      3060
     gcaaagaaaa gtctactgtt caacgcagta gagcaagcct acccagagat cattacggca      3120
     gagaacgttg caagccatgg tacgggtagg aaatatactt acaatgaact aaaagattta      3180
     attttccaga ttgacaactc gaagcagaga accccagaaa aatcagccct gctcggattc      3240
     gcagaggaaa gaaaccgttc ctctgacgaa cgatccaaaa gtagggaaag gcccaacaaa      3300
     cggtgcgagc gatgtggtag cacggcgcac ttgtccaagg actgcaagca cgacgagcct      3360
     aagtgcttta actgcaataa gttcgggcac atcgccgtag actgcagtga accacggaaa      3420
     gagccaccac gaaagagagc gactgatcgc aacagaagta tctctccaaa gagaaagcag      3480
     aggagagagc atagcagatc tcgatcaaag tcacctttca gacgacctgg cactcctgca      3540
     aaaggtacga ccaatactga ttcagtatgc atgaatgtga gtctgaatga atgggacgac      3600
     gagacgcaaa aatttatcgt agattcaggc gcgacagatc atatgacaaa ttctaaactc      3660
     atcttgactc agctgcacga aaagactgag cgcgtaatag gctgtgccaa taaagacaaa      3720
     cgatctaaca taatcgcaac caatcaaggc caagttaaat tcgaactatc ttacggtaac      3780
     gtaataaaac tagataatgt tgtatacgca gaaaatttga gaaaaaacct gctgtcactc      3840
     aaacgcttta cagatcaggg cctgtgcgtg tatttagata acaaaacgat aaacgtttac      3900
     gaaccaaata cgagagaaaa gattctagaa ggaaagtttg agaatccatt ctggataatc      3960
     gatttaaagc caaaattaga taacatacaa aagatgccct cgggtgcgct aattgcccat      4020
     gaaagcaatg aaaagattgt taagaaaaag gtgacattcg ctgatgaaaa gtcagtcata      4080
     gattcagcaa atcaaaggaa agaaaatggt gacgaatcta ccgtaataaa taccattaat      4140
     ttatggcaca ttagattagg acatacggct ctgaataaag taaagcttct gaaaggatta      4200
     taccccgaca ttaaacaatt ccgagaaaat gatcatggtg tgtgtttgaa agattgcgaa      4260
     atatgcaaag tagcgaaaat gaatagaccg aaattcgata ataacaaaga gatggccaag      4320
     aaaccattgc aacgggtcag tgctgacact atgggaccga ttacaccggc tactcatccg      4380
     aaaggctgta ggttcatagt tgtattagta gataattatt cacgctttgc catggcctac      4440
     ccagttaagc aaaagtcgga cgccgccgaa tgcatagatg actttgtcgt gaaatgtaga      4500
     aatatatgcg gaagagatga aaaattctgc tacctagact gtgatcaagg aacagaattt      4560
     accagcggaa agacacagaa ggtattggat aaatatggtg ctgaactcag aacaatttgt      4620
     ccatacactc cacagttaaa cggcatagca gagcgctaca atcaaaccat acagaaaatc      4680
     accagggccc taatgtacga ttctagacta ccagcaaatg cctgggatct ggctgtaaaa      4740
     gcagcggcct acctgtataa cttgacgcct cacaagtcca ttggtcttaa atcacctttg      4800
     ctaatgatca acccagaatc aaaagcatac ataaatcaga ttaagagatt tggttgtgta      4860
     gcttttacca aggtccaagg acaacaggaa actaagttcg ataagctctc gaataaaaca      4920
     gtgttagtag gatatactga cacaggatac ttgttactaa acccagaaga tggtaaagta      4980
     tacgaaagca ggaacgtgca attcatcgaa agcaaagtat ttggagatat ttacaagccc      5040
     gaagatataa agaattggac aataacaaac gatactctga ataaagaaac ctggcttttt      5100
     gaattcgacg aagaaagccc agatcaaccg gaagtggtga ttaaggcacc caagaaaaag      5160
     ggtagaccac gtaaagaaaa tcagaaaaca gccatgaaac ctatttcaaa aataaatcac      5220
     agaccagtga ctcggaagca gactcaaagt aagaaaattg tatcagctga aaaagcacag      5280
     ggtgaaacag aaggtctaaa catatacgac ccagatgcac tgatgacgct tggtacgtca      5340
     gaatcagaaa aaatgcagga taaaattgaa ggcctaagtg aatatgaatt gtatacacta      5400
     ctgacaggta ttaatggaga tccaaaatct taccgagaag ctgtatcatc accagaagca      5460
     gatagatggc aagaagccat aaacaaagag agagaagcac ttcagaaaaa ccgagtatat      5520
     gaagtagtca gtagaactag ctgcgacggt aaaaagttaa acatcctgga ttcgagatgg      5580
     gtattcaaac gtaaagacag tggaacaaaa taccccgact acaaagcaag aattgtcata      5640
     cgaggtttca aggattcaaa tttgtatgat ctttgtgaaa cgtacgcacc agtgtcaaga      5700
     cttgcactag taagagctgt actgactact gctaataaac acgactatgt gctgtggcaa      5760
     ctggacgtaa aagcagcgtt tcttcacagc cctataaaaa aggatatatt tctagaaata      5820
     ccagacggtt ttgaagaata cgaaaatcag aaacaaacga aagtttggaa gcttcacaaa      5880
     tctctttatg gcttgaaaac tagtccaaag aattggaatg aatacttttc agaattcgct      5940
     aaacaactaa aattccaagc gaacagtaga gatccatgcc tgttcatata cgccgaagaa      6000
     aaaagccgca taatcatgct gctgtatgtt gacgacatat tgctgacagg caatgacgag      6060
     ccaaagatga gagaaataca gaaagaactg agtaaaaagt ttgatatgaa attcctgggt      6120
     gaacctaaag agttcttggg aatcactata acaagaaaca gtaaagaaag gaccataaaa      6180
     ctggaccaaa ttaaattcat aaataagatg caaacgaaat ttggatatgc acaagctaaa      6240
     ggtcaatcaa cccccatggt aacaaatcaa gtgctgaaca gacaacgaaa acaacgagag      6300
     gaagaatcaa caaatgacaa agctataaac cagcgtggat acagagaagt ggttggatct      6360
     ctcatgtact tgatgtccgg caccaggcca gatttggcat acgcagtcaa tatgttaagc      6420
     agacaccaac aaaatccgac tgaacacgac tggaaaatgg taacaagagt attcaagtac      6480
     attgcttact caaagaattg gcagctgacc tacaaaggcc tgaaggacgg aatggaaaca      6540
     ttctcagatg caagttttgc agattgtaaa gactcgctca cgacaagcgg acatgtagtt      6600
     acgctgtacg gagatgcaat agcctggaga acccacaagc aaagctacgt ggctttatca      6660
     acttgtcaag ctgaatacgt agcaatgggt gatgcttgta gggaatcaat tagcataagt      6720
     ttatctctga aagtgattcc aaacatgaca tactttccaa tcatcttatg gtgtgataat      6780
     aaagcagcag tcgcttgcac aaagatggat ggaagtaata agttgagaca catggctgga      6840
     gtgtatgagg actatgttaa gcagtgtgtc aagttacatt atgtaaaaat agaatggata      6900
     gaatcaaagg agcaaagagc ggatatcttt accaagcctt tgccctctga tagccataac      6960
     aaattatcca gattattgct aggaaattaa cagatctttc atgttacaga ataactaagg      7020
     gtcagcctgg aaacgatgtc gaggacaatc gggagggagt gttggaata                  7069
//
ID   Copia13-NVi_LTR repbase;    DNA;    INV; 289 BP.
XX
AC   AAZX01023252;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia13-NV;
KW   Copia13-NVi_I; Copia13-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-289
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1160-1160 (2007).
XX
DR   Genome; AAZX01023252; Positions    1157     869.
XX
SQ   Sequence 289 BP; 56 A; 96 C; 60 G; 77 T; 0 other;
     tgtgtacgat ctcccccgac accgacggca gatccctcgc gtcgcagcga ctctagaagc        60
     gctcgccgcc aaaaccacgt gatacggcgc tgagctcggc ggcgctctcc gctcgccgcc       120
     tcactctcta cgagatagtc gagctgcacg cacgccttcg gctcttgtcc cgctctgtct       180
     aagtttaaac tttaataata aagttacgct acgctctatt acttgatact ctgtctttgc       240
     ttctttattt cgtgcaacct tatcgcgtcc ggatccttat ataccgaca                   289
//
ID   Copia14-NVi_I repbase;    DNA;    INV; 4338 BP.
XX
AC   AAZX01010927;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia14-NV;
KW   Copia14-NVi_LTR; internal portion; Copia14-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4338
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1161-1161 (2007).
XX
DR   Genome; AAZX01010927; Positions    5264     927.
XX
CC   Positions [1677-2177] - Integrase core
CC   'AGAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1179..2903,2907..4214)
FT                 /product="Copia14-NV_I_1p"
FT                 /translation="MRDEYVLLGDDTRVKVEGRGKVEILRLVNGQWLEGEI
FT                 NNVLYAPSLKKNLLSAGVCTALNYAVVLAGDQACVYSKNNKLIVQGLKQRN
FT                 NLTTMFIKSKCAEVNRVCIASTKLWHERLGHVSTSTIEKMVKCEAVSGISL
FT                 DKENDFFCDDCPSGKQFKLPFKTHEKSAKVNPVDVVHTDLCGPMQTTSVSG
FT                 ARFFVLFKDESSGFRSVDFLKHKSDTYDALKNHMLHVKNHFGKDVKIVRAD
FT                 NGTEYTDKRVKDFLSSQGIKILFSAPYTPEQNGRAEREMRTIVECARTMLL
FT                 ARGLPRRLWAEAVNTAVYTLNRTIGAMSPTKTPYELWFNKKPDLSHMRIFG
FT                 SDAYVLVPDVSRKKWDAKSVRLTLVGYENDSQNYRLFDSNTGRITVSRNVL
FT                 FNENSWKNAADGATSIPIWDDTLNYDNVQEQDERVIDGGDERVADDDNGRE
FT                 IGENAEPAVKVRGRRHNECGANAEAARDDQPQVERVRYDLRPRENIRSPNR
FT                 LICQVAYDKLYETPENYRDALNCEDAPFWEKAIKEELDAHAKNKTWKIVKK
FT                 PEGKKLVGHKWVFRIKSTKETDQCRYKALCAQGFTQEAGVDYSETFSPVVR
FT                 YESVRILLSIAAEEKLCSLHFDVSTAYLNSKLNEDLYMRVPDGLNVDCKKF
FT                 ALKLEKAIYGLKQAGRCWNERFDTFIKSLDFVQSSADKCVYTGLFKRCKVY
FT                 LALYVDDGLLLCRDQNVLNELVGVLMEEFDITVTNLNFFVGMEISQHDDCI
FT                 FISQEAYINKILKRFEMLDANEVKTPADPSEKLTYPIVKDGLKVPYRELVG
FT                 SLLYLSVISRPDITYAVGVVSRYLDNYDESHWRAAKRILRYLKGTRSLGLL
FT                 FCNNRANSGLVGYSDADYAGDIATRRSTSGYVFLLNGNCVVWSSRRQSTVS
FT                 LSTTEAEFIAASEATKEAIWLRKLLYDIGRQCVGPTILLVDNQSAIKLTRN
FT                 PEFHRRSKHIDARYQFICEKQRDGLIDMLIRTSSVQTCSRRLLVLKNSTQC
FT                 VLRLM"
XX
SQ   Sequence 4338 BP; 1294 A; 917 C; 1080 G; 1047 T; 0 other;
     ggttatgggc ccagccacgc agcggctcga ggaaggaagt ttctttacgc gaagtgttca        60
     gtgagagtgc tgaaaaactt tttggacata cgtttgttca agcaacgtac tcctcgctcg       120
     tttcttttgg tttgacaagt tcacgttatc ttggcaaatc aacgacaatg tcggacatca       180
     gctcccagga tttgcgaaac gtgacgaagt ttaacggaca aaatttccaa ttgtggaaat       240
     ttcaaatgag agtaattttc gtgtctcaag gccttatcaa gattgttgag ggcgccgaag       300
     ttaaacctga agacaccgag gcaaacgccg ctgcaagggc ggactggatc aaacgagacg       360
     cgaaggcaat gttcatattg tcctcatcga tggattacag tcaactcgac tatttgatta       420
     cgtgcacgtc tgccaattcc atgtgggaaa aactttcgag catccacgaa caaagaagcg       480
     ctgcaaacaa gctctctttg acgacgaggt tccacgaata caaaatgacg ccaagcgact       540
     cagcggccca gcacatggcg aaagtggaga acctcgcgaa tcagctcaag gatgtcgggg       600
     agacgatttc tgatgtcatg ataatggcaa aaatcatcgg gaccctgccg tcgaagtaca       660
     gcccgttcat ctcagcatgg gacagcgttc cagaggcaga tcaaaccctg acgaagctac       720
     gtgagagaat tctacgcgag gaatcccggc tctaaaacgt ggacgacgtg accagcgcgc       780
     tcgcgaccac cagcttctct aagaacaagg gcaagaaaga ttcttcatct aacaacggta       840
     atcaaacgaa aagtaagaaa gatattatat gttacttttg taaaaagagc ggtcacatcg       900
     taaagaattg taacgagcgt aaaaataaga aaaaaaaagg caatgcgcct gacgactgta       960
     agaatccccc caaggacggg caagattcca caaactttag cacgttagtc gcctcgtcga      1020
     atcgcgaaat ccgtggaaca gaccgaaaac aaattttgtg ctcgagtcgc gacgagagtt      1080
     ggttccgaga aacgagcgac gaccagctct ggattctcga tagtggcgcc tcacgccact      1140
     actcgtgccg acgcgagtgg ttttcagaat tcacgcctat gcgagacgag tacgttttgc      1200
     tcggtgacga tacgcgtgta aaggtcgaag ggcgtgggaa ggttgagatt ctacgattag      1260
     taaacggtca gtggctggaa ggcgaaataa ataatgtttt atacgctccg tctcttaaga      1320
     aaaacttgtt gtcagccgga gtatgtaccg cgctgaacta tgctgtagtt ctcgccggcg      1380
     atcaagcgtg cgtttattct aagaacaaca agctcatcgt acaaggcctg aaacagcgta      1440
     acaatctgac aacgatgttc ataaaatcga agtgcgccga ggtaaaccgc gtatgtatag      1500
     cttcaaccaa attgtggcac gagcgtctcg gccacgttag cactagcacg atcgaaaaaa      1560
     tggtcaaatg cgaagcggtc tcgggcatat cgctcgataa agagaacgat tttttttgcg      1620
     atgactgtcc atccggaaaa cagtttaaac taccatttaa aacgcacgag aaaagcgcga      1680
     aggtgaatcc cgtcgacgta gtccacaccg acttatgcgg gcctatgcag acaacatcgg      1740
     tcagtggtgc tagatttttc gtgttattta aagacgaatc atcggggttt cgaagtgttg      1800
     attttctgaa gcataaaagc gacacgtatg acgctttgaa aaatcatatg ctgcacgtca      1860
     aaaatcattt cggtaaggac gtaaaaatag ttcgcgcgga caacggtact gaatacacag      1920
     acaagcgtgt caaggatttc ctgtcatccc aaggcattaa gattttgttc tcggctcctt      1980
     acacgccgga gcaaaacgga cgagccgaac gcgagatgcg taccatcgta gagtgcgctc      2040
     ggacgatgtt attagcgcgg ggcttgccgc gtcgcctttg ggccgaagcg gttaataccg      2100
     ccgtgtatac actcaatcga acgatcgggg caatgtcacc gacgaaaact ccgtacgagt      2160
     tatggtttaa caagaagccg gatctgtcgc acatgcggat ttttgggagc gatgcatatg      2220
     tattagtccc agacgtttcg cgaaagaaat gggatgcaaa atccgttcga ttaacccttg      2280
     ttggatacga aaacgattcg cagaactaca ggttgttcga ctcgaacaca ggcaggatta      2340
     ctgtttcgag aaacgtgctt tttaatgaaa actcgtggaa aaacgcggca gatggagcga      2400
     cttcaatccc gatttgggac gacacactaa attatgacaa tgttcaagaa caagatgaac      2460
     gcgtaataga cggcggcgat gagcgcgtag cggacgatga caacgggcgc gagatcggcg      2520
     agaatgctga gccagctgta aaagtgcggg gcagacgaca caacgagtgc ggagcaaacg      2580
     ccgaggcagc tcgcgacgat cagcctcaag tcgaacgagt tcgatatgat ctgcgacctc      2640
     gcgaaaacat tcgatcgccg aaccgcctaa tttgtcaagt cgcttacgat aaactctacg      2700
     aaacacctga aaattacaga gacgcgttga actgtgaaga tgctccattt tgggaaaaag      2760
     ctataaaaga ggagcttgac gcccacgcga aaaataaaac ttggaaaatt gtaaagaaac      2820
     cggaagggaa gaagcttgtt ggtcacaagt gggtttttag gattaaatct acgaaagaaa      2880
     ctgaccagtg tcgctataag gcatgactgt gcgcgcaggg tttcacgcag gaggccggtg      2940
     tggactatag cgaaacattt tctcccgtgg ttcgttacga gtccgtgcga atattgttat      3000
     cgatagctgc agaagagaag ctttgttctc tacatttcga tgtaagcact gcgtacttga      3060
     acagcaaatt aaatgaagat ttgtacatgc gagtccccga cggactaaat gtagactgca      3120
     agaaatttgc gctaaaactt gagaaagcaa tatacggttt aaaacaggcc ggtcgatgct      3180
     ggaatgaaag attcgatact ttcattaaaa gcctggattt cgtgcaaagc agtgctgaca      3240
     aatgcgtata cacgggacta tttaagcgtt gtaaagtgta tctggcattg tatgtagacg      3300
     acgggctttt gttatgtcgc gatcagaatg tactcaacga attagttggc gttttgatgg      3360
     aagaattcga catcaccgta acaaacctga atttcttcgt cggcatggag atttcacagc      3420
     acgatgattg tatttttatc agccaagagg cttatattaa taagatttta aaacggtttg      3480
     aaatgttaga cgctaatgag gttaaaacac ccgctgaccc tagtgagaaa ttgacgtatc      3540
     cgatcgtcaa agatggactg aaagtccctt atcgcgagtt agttgggtca ttgttatatc      3600
     tatcagtgat ctcacgacct gatatcacgt atgcggtcgg tgtggtcagc aggtatctcg      3660
     acaattatga tgaatcgcat tggcgcgcag ctaaacgtat cttgcgatac ttaaaaggga      3720
     cgcgttccct cggattatta ttttgtaata atcgcgcgaa tagtggactg gtcggatatt      3780
     ccgatgcgga ctatgccgga gatattgcaa ctcgtcgatc aacaagcgga tatgtattcc      3840
     tgctgaacgg aaattgtgta gtctggtcgt ccagaagaca aagtactgta agcctcagca      3900
     ccaccgaggc agagtttatt gcggccagcg aggcaacgaa agaggctatt tggcttcgta      3960
     aactattata cgacatcgga cgccaatgtg ttggaccaac gattttattg gtggataatc      4020
     agagcgcgat taaactgacc cgaaacccgg agtttcatcg cagatccaaa cacatagacg      4080
     cccgttatca attcatttgc gagaaacagc gtgatggttt gattgatatg ttaatacgaa      4140
     cgagcagtgt gcagacgtgt tcacgaaggc tcttagtttt aaaaaattca actcaatgtg      4200
     ttctacgatt aatgtaacca gtttgtaata ttcagtttat tatattctta taatttatct      4260
     gtggttttca atattgtact caatcgaaag ttctatgtaa gaaaaggaga gacatcaaaa      4320
     acactcaaat agtggggg                                                    4338
//
ID   Copia14-NVi_LTR repbase;    DNA;    INV; 268 BP.
XX
AC   AAZX01010927;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia14-NV;
KW   Copia14-NVi_I; Copia14-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-268
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1156-1156 (2007).
XX
DR   Genome; AAZX01010927; Positions     926     659.
XX
SQ   Sequence 268 BP; 66 A; 70 C; 55 G; 77 T; 0 other;
     tgttgaaatc tagtgtgtat tttcgcgttt tcgataggct aagtcctaca catattcaga        60
     ctagtatagc gtcctccgat gagacccgac aataagagtg gggatgacac gacatcgcgc       120
     gctcctagcg gcgtttcgaa ctccgatctg taaggaccat attcagtcga actcccgagc       180
     gagtagcacc tctcgaataa agcctttttg tatttcaata agtgtcttgc atctttactt       240
     cgcgttatcc tcccgcatac cctcaaca                                          268
//
ID   Copia15-NVi_I repbase;    DNA;    INV; 4184 BP.
XX
AC   AAZX01023481;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia15-NV;
KW   Copia15-NVi_LTR; internal portion; Copia15-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4184
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1157-1157 (2007).
XX
DR   Genome; AAZX01023481; Positions    4855     672.
XX
CC   Positions [1569-2078] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4145
FT                 /product="Copia15-NV_I_1p"
FT                 /translation="MSQEHSNYHFTKFDGTNYQVWKFQMRAVLTANSVYDI
FT                 VLGTKKRVRSGETGYDQEKEEKWLKDNAKAMCILSSAMEINQLESCITCET
FT                 ANEMWMKMTLIHEHKSATNRSTLLQKFHTCKMETSEPAIAFVTKIQNMART
FT                 LEDLGEKISEAGVIAKILGSLPSKYSSLITAWDSVDSDKQNIDNLQERLIK
FT                 EERRLSETEENETGAFTVSNVRHVNKASRETGNNQNTRREGYRNLSQVICH
FT                 NCKKPGHIMRFCRRRRNTKGKQADTPKDKSDHVSAFVTTIDDNFSREKAAT
FT                 HQEIERLMKSDSSEIWIGDSGASRHMTYRRDWFSSFTSEHGATIVLGNNKV
FT                 CDVRGSGTIIIEKFLNGKWHRGRIENVLYIPELKKNLFSIGVCTALGYEVS
FT                 FYDNVVKICLDGSVVAQGEKQNNEIYRMFFRSVAQCEAHLSASSLQQWHER
FT                 AGHVNRRTLQEMIKNGVIEGVKISDVEDFVCEACQMGKAHILPFKKEVEHR
FT                 QWKMGECIYSDVCGPMLTNSIKGARYFVLFKDDASSYRLVYFIKHKSDVFD
FT                 KFKEVERLIYNKFNCRIKVLHTDNGREYCNGQMKKFLAQKGIRLETTAPYT
FT                 PQQNGKVERENRTVVESARTMMLHRQVPKYLWAEAVNTAVYVLNMTATSKR
FT                 PETTPYECWIGRKPDYSHLKVFGVPAYAHVPKMLRDKLDAKAKKSIFVGYQ
FT                 DESRNYRLYDYKTRKVFVSRNVTFVENENCCANEYQQVQATLPLPSCDGEE
FT                 MVENPVDNAYQRISSDSTEGADESTADVTQEGPTTMKKTVNKQTTRKKNDA
FT                 VDPSIFSSCRQLRVRENIKKPERYEGNVTEYEPATYQEAIESPDATKWTQA
FT                 IQEELLAHERNGTWTIVPRPQGRKVIDSRWIFKVQDPKAGKENRYKARLCA
FT                 RGFRQEYGIDFNETFSPVIRYDALRVMLAIATHRDLEIVQFDVTTAFLHGK
FT                 LEEEVYMKIPEGLQINSGKEEYVCRLNKSLYGLKQASRCWNETFKNFLFSL
FT                 DFKCSDIDSSIFIAVKRNVKVFLLLFVDDGLVLTEDKDVLSEILDSLRNKF
FT                 QITVSDVDNFVGLKIVRDRVNKTMFLHQAEYASKVLEKFNMTDANSVSTPM
FT                 EKNAISSEVQQHSQQIEKLPYRELIGSLMFLTVVSRPDIAYAVNVLSRFLN
FT                 NFNRTHWELAKRVLKYLKGSLHMGILYTSNESEPLLVGYCDSDFAGDQLTR
FT                 KSTSGFVFKMCGGPMTWNVGRQKDVALSTTEAEYVAASLASREAIWLRRLL
FT                 SGVGCPCASATVLNVDNQSAIKLVKNPVMHKRTKHIDIRCHFIREKYERGE
FT                 IDVKYVSTECQLADVFTKALTRNCHERMCKGIGLVHLSA"
XX
SQ   Sequence 4184 BP; 1412 A; 743 C; 986 G; 1043 T; 0 other;
     ttaaaaggtt atgggcccag gctcgcgacg agaatagacg gagaaatacg tggcaagtaa        60
     agttttgtga agtaatttat caagaaatca agatgtctca agaacactcc aattatcatt       120
     ttaccaagtt cgatggtaca aactatcagg tttggaaatt ccaaatgcgc gcagtgctca       180
     cagcaaatag cgtatacgac attgtgctcg ggacgaagaa aagagtgcgc agcggcgaaa       240
     ctggctacga tcaagaaaag gaagagaaat ggttaaaaga caacgccaaa gccatgtgca       300
     tactctcgtc tgcgatggaa ataaatcagt tagagtcctg tattacatgc gaaactgcca       360
     acgagatgtg gatgaaaatg actctcatac acgagcacaa gtcggcaaca aatagatcga       420
     cgctattgca aaaatttcat acctgcaaaa tggaaactag tgaaccggct atagcattcg       480
     ttacaaaaat tcaaaatatg gcaaggacgc tagaagactt gggtgagaaa atttcagaag       540
     ccggcgtaat cgcaaaaatt ctcggaagct tgccgtcgaa atacagcagt cttattacag       600
     cttgggacag tgttgatagc gacaagcaaa atattgataa ccttcaagag aggctaataa       660
     aggaagagag acggctaagc gagacggaag agaacgaaac aggcgcattt acggtttcga       720
     atgtgcgaca tgtaaacaag gcaagtagag agactggcaa taatcaaaac acaagacgcg       780
     agggctatcg aaatttatcg caggtaatat gccacaattg taagaagcca ggccacatca       840
     tgagattttg tcgtcgtaga agaaacacga aaggtaaaca agccgatact ccaaaagaca       900
     aatccgatca tgtaagtgct ttcgttacca ctatcgatga taatttctcg cgtgaaaaag       960
     ccgctacaca ccaagaaatt gaacggctta tgaaatcgga ctcgtcggag atctggattg      1020
     gcgatagtgg cgcatcgcga catatgactt acaggcgtga ttggttttct tctttcacct      1080
     cagaacatgg tgccacaatt gtacttggaa ataacaaggt gtgcgacgta agaggctccg      1140
     gtacaatcat tattgagaaa tttttaaacg gaaaatggca tcgcggtcga attgaaaatg      1200
     tattatacat tccggaatta aagaaaaatt tattttccat tggtgtatgt acggcccttg      1260
     gttacgaggt atccttttat gacaacgttg tgaaaatatg tttggacggc tccgtggtcg      1320
     cgcaaggaga aaaacagaat aatgaaattt atcgaatgtt ttttagatct gttgctcaat      1380
     gtgaagctca tctctcggcc agcagccttc aacaatggca tgaacgagca ggccatgtga      1440
     atagacgaac tcttcaagag atgataaaaa atggcgtcat tgaaggagtc aagataagcg      1500
     acgtagaaga ttttgtatgt gaagcctgcc agatgggtaa agcccatatt ctacccttca      1560
     agaaggaagt tgagcatcga cagtggaaaa tgggagagtg catctacagc gatgtatgcg      1620
     ggccgatgtt gacaaactcc ataaagggtg ctaggtattt tgtgctattt aaagatgatg      1680
     cgtccagtta caggcttgtg tattttatta agcataagtc agacgttttt gataagttta      1740
     aagaagtaga acgtcttatt tataataaat tcaactgtcg tatcaaggtg cttcatacag      1800
     acaatggacg agaatattgt aacggacaaa tgaagaaatt tctagcgcaa aaaggcatca      1860
     ggctggaaac gactgcgcca tacacacccc agcaaaatgg aaaagttgag agagaaaata      1920
     gaaccgtggt cgagagtgct cgaaccatga tgctgcatcg ccaggtaccg aagtatttat      1980
     gggctgaggc tgtaaataca gcagtatacg ttctcaacat gacagccacg agtaaaaggc      2040
     cagagacaac gccctatgag tgctggatag gcaggaagcc tgattattcg catctcaaag      2100
     tttttggtgt gccggcttat gcacatgtgc caaagatgct tcgagataag ctggatgcga      2160
     aggcaaagaa aagcattttc gttggttatc aggacgaatc acggaattat agattgtacg      2220
     attataaaac aagaaaggta tttgtttccc ggaatgttac atttgttgaa aatgaaaatt      2280
     gttgtgccaa tgaatatcaa caggttcaag ccactttgcc attgccttca tgcgacgggg      2340
     aagaaatggt tgagaatcct gttgacaatg catatcaaag gatttccagc gattcaacag      2400
     aaggtgctga tgaatctact gcggacgtaa cccaagaagg accaacaact atgaagaaaa      2460
     ctgtcaacaa acagactacg agaaagaaaa acgacgcagt ggatccttca attttctcct      2520
     catgtcgcca actgagagta agagaaaata tcaagaaacc cgaacggtat gaaggaaatg      2580
     tcacagagta tgaaccagca acgtaccagg aagcgataga atctccagat gctacaaaat      2640
     ggactcaggc tattcaagaa gaattgctcg cccacgaaag aaatggtacg tggactattg      2700
     tacctcgacc gcaaggacga aaagtcatag attcgaggtg gatatttaaa gtacaagatc      2760
     cgaaagctgg aaaagaaaat cggtacaagg cacgtctatg tgcgagaggt ttcagacaag      2820
     agtatggcat cgattttaac gaaaccttct ctccagtaat ccgttacgat gcactccgag      2880
     ttatgcttgc gatagccact catcgggatc ttgaaattgt acagtttgat gtgacaacgg      2940
     catttctgca tggcaagtta gaagaagagg tgtacatgaa gattcctgag ggactacaaa      3000
     tcaacagcgg taaagaggaa tatgtgtgcc ggctcaataa gtccctatac ggcctgaaac      3060
     aagcgtccag atgctggaac gagactttta agaatttttt gtttagttta gattttaaat      3120
     gtagtgatat agatagctcg atctttatag cggtaaagag aaatgtaaaa gtgtttttgt      3180
     tgttatttgt agacgacggt ttagttttaa cagaggacaa agatgtatta agtgaaattt      3240
     tagactctct gcgaaataaa ttccagatta ctgtaagtga tgtcgataac tttgtcggtc      3300
     ttaaaattgt gcgtgatagg gtaaataaga caatgtttct gcaccaagcc gaatatgcaa      3360
     gtaaagtctt ggaaaagttc aacatgacag atgcaaattc tgtaagcaca cctatggaga      3420
     aaaatgctat ttcgtcagag gtgcagcaac attctcagca aatcgaaaaa ttgccgtaca      3480
     gagagctaat aggctctcta atgtttttga cagttgtatc gcgtccagac atagcctatg      3540
     ctgttaatgt attgagccgt ttcttgaata attttaatag aacccattgg gaattagcaa      3600
     aaagagtttt aaaatatttg aaaggctctt tacatatggg aatcctatat acatctaacg      3660
     aaagcgaacc actacttgtt ggctattgtg attccgattt tgcgggcgat cagctgacgc      3720
     gaaaatcgac gtctggtttt gtttttaaaa tgtgtggggg tccaatgacc tggaatgtag      3780
     gtcgtcaaaa agacgtagca cttagcacaa ctgaggctga atatgtagcc gcgagtttag      3840
     catcgagaga ggcaatttgg ttgcgaagat tattgagtgg cgtcggatgt ccttgtgcaa      3900
     gtgcgacagt tttgaatgta gacaaccaaa gtgcaatcaa gttagtcaaa aatcccgtaa      3960
     tgcacaaacg cacaaagcac attgacatcc gatgtcactt tataagagaa aaatatgaga      4020
     gaggagaaat tgatgtaaaa tatgtatcaa cagagtgtca actcgccgat gtattcacaa      4080
     aagcactaac gagaaattgt catgagagaa tgtgcaaggg gatagggcta gtacacctta      4140
     gcgcataaaa tcattttggt aaaatacgta aaaaggggaa gtat                       4184
//
ID   Copia15-NVi_LTR repbase;    DNA;    INV; 381 BP.
XX
AC   AAZX01023481;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia15-NV;
KW   Copia15-NVi_I; Copia15-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-381
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1158-1158 (2007).
XX
DR   Genome; AAZX01023481; Positions     671     291.
XX
SQ   Sequence 381 BP; 99 A; 66 C; 93 G; 123 T; 0 other;
     tgaaagcgta ttttccgtat tttctagtgt gtaagtacga atgggatatt tatgtatcta        60
     ggtgagtata ggtccaacgc tttcttatcc ccactcgcgt aactctcttt tcagcacgta       120
     agtgcgtatg tatgtatcaa aggtccgtga gtctgtgtgt gtatgacgcg tatataagcg       180
     gcgtaaatat cggtccgtcc cgcaatattg tgtcgcatct gctgtgaaca ggtctttagg       240
     ttgcgctaag agtggtggat aatttatacc gtgtattgta ccgagtatag aagactcgag       300
     gtgaaggtgt gagtggttaa ataaacggaa gcaattatca acgaacttga gtcatttatt       360
     tgagcctatt ctacctaaac a                                                 381
//
ID   Copia16-NVi_I repbase;    DNA;    INV; 4224 BP.
XX
AC   AAZX01024383;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia16-NV;
KW   Copia16-NVi_LTR; internal portion; Copia16-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4224
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1153-1153 (2007).
XX
DR   Genome; AAZX01024383; Positions    4856     633.
XX
CC   Positions [1560-2093] - Integrase core
CC   'TGTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..2897
FT                 /product="Copia16-NV_I_2p"
FT                 /translation="MEGELTRIIKLRDINNWSIWKFQVKVISKSSGVWDVV
FT                 SGTRTCPGALATTAAADAITENQKSIEKWNKDDSLAQKIIVTTVSEQAMLH
FT                 IINCDTAKSMWDNFVTVYEQKSLATTHMLQQKWFTITKEPSDDIATHIAKL
FT                 EDIAHRLKLAGETMNDNMIITKILLTLPPSYDHFINAWESTPETERTKANL
FT                 TSRLINQEMRESSRDETALASHKYNKRGNFERPAADKSKNKWKPGKCHNCN
FT                 KPGHWARECRSKKSNDKENYGTKSTESKSKPHGNALMIDAFASIQSSDNHT
FT                 NLWYKDSGASSHMTHHKDWFLNYEPFKKPTWVRIGDGSLLEACGSGDINVL
FT                 SYNGNSWDPSHLSNVIYVPDLKYNLFSSNVTMDKGLMLSSDNRTCKFTKGG
FT                 KTIVIGERIGNLFVMKLKVEDASNAPHQAMVASEHSLATWHEKFAHQNYQR
FT                 VKQILSQRNIVLKDKNEPFCDACAIGKTHRLPFHGSKSETSRIGEIIHADL
FT                 CGPMQEASLKGSKYFLLLKDDFSKFRTVYFVTAKSDVYNCIEDYVKKAEKH
FT                 CPKGVKIIRTDNGLEFVNQNVSKLLNKYGIEHQRTVAYTPEQNGAAERENR
FT                 TLIEAVRSILAGKGFEKKFWAEATNTATHVMNCTGTSRIPNKTPYELWYNQ
FT                 EPKIQDLHIFGEKVYVHIPKEKRRKLDDKGKPGLFMGYEQYVKGFRILILE
FT                 TNKIEIARDVVFSGIAEPVNKTRIEENYDIILYLPKETDDEPEREREENLP
FT                 DENDREENVPDEPEIGLEENLPDNHDREENVPAEPEREAEENLPVRRNLRK
FT                 KHECSKPKRFDDYIDPDEIDIEELFITDIQEPLTFHEATNCPDADEWKRAM
FT                 QEEINSLSKNQVWTLVDAPKKETVMESRWIFKLKRDANDNIKRFKARLVAK
FT                 GFSAERRNRLQRNL"
FT   CDS           3025..4191
FT                 /product="Copia16-NV_I_1p"
FT                 /translation="MKQPHGFSDGSKKVCKLLRSLYGLKQSSRCWNQKFTS
FT                 FLSKHDLKATNADPCIFVSTNENKRLILGIYIDDGLIAAQSQAVVNELLAE
FT                 LKQEFEITHSCVNIFLGLQIECLKDGSFFVHQSSYVKKILEVFNMNNANSV
FT                 TIPADTNQEMCVSMHSGDQTKATNAPYREAIGKLMYLSTGTRPDITFAVNR
FT                 ASRYMENPNKIHWNAVKRILKYLKGTQTLGLLFSPTEDDQLYAYSDADYAG
FT                 EVETRKSTSGSLITLGNSLITWNSRKQSTVALSTTDAEYIAACETTRDIMW
FT                 IKKLVREVCNTKHVDTILHLDNQSAIKLIKNPVFHKRTKHIDIKFHYVREK
FT                 FEQKEFELEYINTHKQLADVFTKALAKMQFEQHRSFLLHDLQTVIN"
XX
SQ   Sequence 4224 BP; 1603 A; 746 C; 815 G; 1060 T; 0 other;
     ggttatgggc ccagttacga attaaacact atattttttt tacttctcca ctattggagc        60
     aaaaatagaa gggtgttcaa tcttacgttt gaggttatcc agccacgttg tgcaaaagtg       120
     aaagtactca acacgtaaaa accatggaag gtgaactaac tcgaataatt aaactcagag       180
     acataaataa ctggagtata tggaaattcc aagtaaaagt aatttcaaaa tccagtggag       240
     tatgggatgt ggtttcgggc acaagaacgt gtccaggtgc gcttgcaaca accgcagctg       300
     cagatgcaat tactgaaaac cagaaaagta ttgaaaaatg gaataaagat gattcccttg       360
     cacaaaaaat catcgttaca acagtttcag agcaagcaat gctacacata ataaattgcg       420
     ataccgctaa aagtatgtgg gataattttg taacagtata tgaacaaaaa tcacttgcta       480
     caacacacat gttacaacaa aaatggttca caatcacaaa agaaccgtct gatgacattg       540
     ctacacatat agcaaaacta gaagatatag ctcatcgcct gaaacttgct ggtgaaacta       600
     tgaatgataa catgataatt acaaagattt tgttaacctt accaccaagc tatgaccact       660
     ttatcaatgc atgggaatca acgccagaga ctgagcgaac caaagcaaat ttgacttcaa       720
     gactgattaa tcaagaaatg agagaatcct ctcgagatga aactgcacta gcttctcata       780
     aatacaacaa aagaggaaat tttgaaagac cagcggctga caaatctaaa aataaatgga       840
     aaccaggtaa atgtcacaat tgcaataagc ctggtcattg ggctcgtgaa tgccgtagta       900
     aaaagtcgaa tgataaagaa aattatggaa caaaatctac tgagtcaaaa agtaaaccgc       960
     atggaaatgc attaatgatt gatgcttttg cgtcaattca aagtagtgac aaccatacaa      1020
     atttatggta taaagattca ggagccagta gtcatatgac acaccacaag gattggtttt      1080
     tgaactatga accgttcaaa aagccaactt gggtacgtat aggagatgga agcttgcttg      1140
     aagcctgtgg atcaggggac ataaatgtac tatcgtacaa tggaaatagt tgggatccta      1200
     gtcacttatc caatgtaata tacgtacctg atttaaagta taaccttttt tcgtcaaacg      1260
     taaccatgga caaaggttta atgctctctt cagataaccg cacttgcaaa tttaccaaag      1320
     gaggtaaaac catagttata ggtgaacgaa taggaaacct atttgtaatg aagctgaaag      1380
     ttgaggatgc atcaaatgct ccacatcaag ccatggtagc atctgaacat tcgctagcca      1440
     catggcatga gaagtttgcg caccaaaact accagcgagt caagcaaata ctaagtcaac      1500
     ggaatatagt attaaaggac aaaaatgaac ctttctgtga tgcctgtgca ataggtaaga      1560
     ctcacagatt gccctttcat ggtagcaaat ctgaaactag tcgcatagga gaaataatac      1620
     atgctgactt gtgtggacct atgcaagaag catctctcaa agggtctaag tatttcttat      1680
     tacttaaaga tgatttctcg aagtttcgca cagtatattt tgtaacagca aagtcagatg      1740
     tatacaattg catagaagac tatgtcaaga aagctgaaaa acattgtcct aaaggagtca      1800
     aaattatcag gacagacaat ggattagagt ttgtcaacca gaatgtttca aaattattaa      1860
     ataagtatgg gattgagcat caaagaactg tggcttatac tccagagcaa aatggagctg      1920
     ctgaaaggga gaaccgaacc ctaatagaag ctgtccgatc catccttgct ggaaaaggtt      1980
     tcgaaaagaa attttgggca gaagccacga acactgctac tcatgttatg aactgtacag      2040
     gtactagtcg aataccaaat aagactccgt atgaactttg gtataaccaa gagccaaaga      2100
     ttcaagatct acatatattt ggagaaaaag tgtacgtaca cattcccaaa gaaaaaagaa      2160
     gaaaattaga cgacaaagga aaaccaggat tatttatggg atatgaacaa tatgtaaagg      2220
     gattcaggat attaattcta gaaacaaaca agattgaaat tgctagagat gtagtattca      2280
     gtggtatagc tgaacctgta aataaaacta gaatagaaga aaattatgat ataattttat      2340
     acttacccaa ggaaaccgat gatgaacctg aaagagaaag agaagaaaac ttacctgatg      2400
     aaaacgatag agaagaaaac gtacctgatg aacctgaaat aggattagaa gaaaacttac      2460
     ctgataacca tgacagagaa gaaaacgtac cagctgaacc tgaaagagaa gcagaagaaa      2520
     acttacctgt aagaagaaac ttgaggaaga aacatgaatg cagtaaacca aaaaggttcg      2580
     atgattatat agatcctgat gaaatagaca tcgaagaact ttttattact gacattcaag      2640
     aacctcttac ctttcacgaa gccacaaatt gtcctgatgc tgatgaatgg aagcgtgcca      2700
     tgcaggagga gattaattcc ctaagcaaaa atcaagtctg gactttagtt gatgcaccta      2760
     aaaaagaaac tgtgatggag agtcgttgga tattcaagtt gaaaagagat gccaacgata      2820
     atattaaacg attcaaggct cgcttagtag caaagggttt ttctgcagag agaaggaatc      2880
     gactacaaag aaacctttag ccctgtcatc agatttgatt caatcagatt aatacttacc      2940
     atagcagcaa aagagaggtt agtccttaga caatttgatg tgaaaacagc cttcctgtat      3000
     ggcaacatcg aagaaacaat atacatgaaa cagccacatg gtttctctga cggatccaaa      3060
     aaagtatgta agttacttcg aagtctatat ggtttaaagc aatcatccag atgctggaac      3120
     caaaaattca catcctttct aagtaagcat gatctcaaag caacaaatgc tgatccatgc      3180
     atttttgttt ctactaacga gaataaaaga cttattctag gcatatatat tgacgatgga      3240
     ctcattgcag cacaaagtca agctgtagta aatgagcttc tggcagaact aaaacaagaa      3300
     tttgaaataa cacatagttg tgtaaatata tttttaggat tacaaataga atgtctgaaa      3360
     gatggatcat tctttgtcca tcaatcaagt tacgttaaaa aaatacttga agtgttcaat      3420
     atgaataatg caaacagcgt taccatacct gctgatacta accaggagat gtgcgtttct      3480
     atgcattcag gagatcaaac aaaagccacc aatgcacctt accgtgaagc tattggtaaa      3540
     cttatgtatc tctctactgg gaccagaccg gatatcactt ttgctgttaa ccgagccagc      3600
     agatatatgg aaaacccgaa taagatacac tggaatgctg taaaaagaat tctaaaatac      3660
     ctgaaaggga cacaaactct aggattgtta ttcagcccca ctgaagacga tcaattgtat      3720
     gcatatagtg atgctgacta tgcaggcgaa gtagaaactc gaaagtcaac atctggaagt      3780
     cttatcacat tgggaaatag tctaatcaca tggaactccc gcaaacaatc tactgttgct      3840
     ttgtctacaa ccgatgcaga atacattgca gcttgtgaaa caacaagaga catcatgtgg      3900
     attaagaaac tggtcagaga agtttgtaac acaaagcacg tggacacaat tcttcatctt      3960
     gataaccaaa gtgctattaa actaatcaaa aatccagtct tccataaacg tacaaaacat      4020
     attgacatca agtttcacta tgtaagagaa aaattcgagc agaaggagtt tgaactggaa      4080
     tatatcaaca cacacaaaca actagcagac gttttcacca aagcgctggc caagatgcag      4140
     tttgaacaac acagaagctt tttattacac gatctccaga cagtgattaa ttaaaataaa      4200
     catatattat agaaacaggg ggag                                             4224
//
ID   Copia16-NVi_LTR repbase;    DNA;    INV; 293 BP.
XX
AC   AAZX01024383;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia16-NV;
KW   Copia16-NVi_I; Copia16-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-293
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1154-1154 (2007).
XX
DR   Genome; AAZX01024383; Positions     632     340.
XX
SQ   Sequence 293 BP; 95 A; 50 C; 33 G; 115 T; 0 other;
     tgttaaaata acaatataag tttcaataat atctaattca actattatct tataattgtt        60
     atatgaatat gtaaaactaa gaggtagtct gcactttgta gtgctaccaa ccccttttgt       120
     ttttcttaag ttactacctc ttatgaatat aggttagtct tcacgcgctc ccactttttt       180
     ttttttgttc tgttcctaca cacgaacaaa tatgtaaatc ttagagataa ataaatcttt       240
     tatttactgg aacatcgcaa gttaagagtt aattattcac ccaattctta aca              293
//
ID   Copia17-NVi_I repbase;    DNA;    INV; 7603 BP.
XX
AC   AAZX01010587;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia17-NV;
KW   Copia17-NVi_LTR; internal portion; Copia17-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7603
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1155-1155 (2007).
XX
DR   Genome; AAZX01010587; Positions    5697   13299.
XX
CC   Positions [4942-5349] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4942..7455
FT                 /product="Copia17-NV_I_1p"
FT                 /translation="MIIRERLTYPIRQKTEVSKCLVEFIRSVRNVLGSDEK
FT                 FCYLRCDRGTEFTGNAMIDVLDKFGAELQLACPDTPEDNGVAERFNRTIQS
FT                 KIRAWMFDSGLPSTMWDLAVKASVYVYNRTPHKSYEMKIPINLLNSKIDSN
FT                 LRQIKRFGCVAYVRATRNEGTTFSVKGIRSFIVGYIPTGYILYTPEEKRLY
FT                 ESRHVKCIEEVVYKDYFDKRESDEELFKIDIEDEVDCQQVEQERKSQENMS
FT                 QVDVIDVNKLVSSEEVESNDKVKETKRKRGRPKKLTKQSVMFCSEANENTE
FT                 QTETRDFALHALLAKIQGDPQTYREAVSSKDSEHWFKSIQVELDLIKDKEV
FT                 YEIIERPKGRIRMGKPNVIDSRWVFKRKIDKQEKTKFKSRLVIRGFKDKNA
FT                 YELSETYAPVSRMSLIRSFLVIANKYDLKLKQLDVETAFLYGDLSEEILME
FT                 IPEGIMVSKEYRKKFVWKLKKALYGLKISPKKWNNKFTAVMNELRFISSDM
FT                 DPCLFFRQSNYGVMIVVLYVDDILLAGNNMTELTEFSSKLSRKFKIKDLGK
FT                 PKEFLGIKIERCEEKKIIKLNQTKFIDNMLKRFGFDKIRSVNTPIASTQIT
FT                 NKDRKTRETEYIVSEAVNNRLYREAVGSLLYLAGVTRPDISFAVNVLSRHQ
FT                 VAPTKYEWKMVQRVFQYLIGTRHYSLIYSGKENYMKAYSDASLSDCGGSLT
FT                 TCGYAIQLYGDTVDWKTHKQQSLALSTCQAEYVAMSEACQAILALHNSVCF
FT                 ILRNDMYPIDLFCDNMAAQACANTDGGNRLRHMVERKEHYIKECVKRGYVK
FT                 ITWVKSADQLADIFTKALSFPVHEKLSLLLLNMIYN"
XX
SQ   Sequence 7603 BP; 2805 A; 1022 C; 1901 G; 1875 T; 0 other;
     ggttatggtc ccagcccgca tccacgacgc gaataaacaa ttttaatagt gtgaaagtgt        60
     tcgtgagtgc gtactttaag aggaagagag aaaacgcagc ttcgagcggc attgaggaag       120
     gtcgtgagat tccttaggag actacggcgc ttaagtcaat aatggggaca ggtaggtgat       180
     aattaatgtg agtgtacata caaaagacgc gagtaaaatc ttaggaaagt tagagacgcg       240
     gaagtgacgt ttacataatg cacgaaaaga cgcggagata aagaaaacta aaatcccgga       300
     atcgagagta aagtaaatct gacgtgtaaa attaatgacg tgtgtgaaat agtgtaaaat       360
     aaattcgttt atcaggaaac gctgaacaaa agacatttga cgacgtgagg gttaaacgga       420
     aagttaggaa aatttataaa aaaaaaaaga cgcaagctga aatcgtgatt aaacgtgcat       480
     gcgcttcttg gcacaaagca agtatgctct gaattccaag aaccggtcaa atcggcaaga       540
     tggctgacga gtggcgcaat tttgagcggg aaatcgtgcg cgagaaagaa aggaagattt       600
     tctgatgaag atgttcgccg tgaagaagca gagtagcgca aggaaggggg cgtggcttag       660
     ctgcgcgcgc taagagcggc aaggatggga tgcatgagag agagagagag agagagagag       720
     aaagagattt tgtaccggca gagttgaagt gcgtgtgtgt gtgagagaga gagagagaga       780
     aagaacggta ctttaccggc agagttgaag cgcgtgcatg cgagagagag ggaaaaagcg       840
     gtacagcgcg gggacgcgag agcgtatgcc atgcacgaga aagagaaaga gaaagagaga       900
     gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga       960
     gagcatacat gagtgaacat gagagtatgc atgagcgtga gactgtaaat ttgaaaaaca      1020
     gccgatcgtc ttttacgcta agcgaagtgc tgcggttgcc acttgactcg acgccgacga      1080
     atgtccgcag gttctagtgc cgtgggcacg tgctcacgcg cgtatggccg ataggcgcta      1140
     ttgccaggcg tagtgcgtga tgattgtctg cggccgtagt atacaataag ctatctgtgg      1200
     aattaatgct atgttgaatt tacagagact gaggagggaa tcgaagagat agtgagaaga      1260
     gtatgtaagg cgatgaatgc tttacatata ttggctgagg agagagtgta cctaggaaaa      1320
     ggaaaagatg gaaaactggt attttccacg aagaattcgc tgttcaaaat aggtaaggaa      1380
     gtgtactgat ggattaaaag taaagaagtg tatttagtga tgatttaaga gggcgtgtcc      1440
     tagtaaggag atgagaaagt gcgcactgac agaggacggg aaaccgaggt tactaggttg      1500
     agggaattta ttcagatggg ataattctta acttactatt aaaattatgc atgcatggga      1560
     tgtgctaaag agtagagtaa gttaggatcc tcgtaaaatc agattaggat atgaagtatg      1620
     ggacagtaat ttattaagaa acgcatgagt tatagaaagt aaaataaaat aagaattgaa      1680
     ttctaataaa taaataaaat gaaatgtatg acatgtatga agtgtgattg aacatgagat      1740
     attttaatga tgaatatatg actagataag atgtgatgca tgcaaagatg agatatatga      1800
     gatggtatat gaaatgaaca acgaattccg ggatgagtta tgttatgtga tgctatatga      1860
     tgagttgaaa tgatcagaat aaatgaggtg cttatcatat tcaaattaaa ctaatgctta      1920
     tttgtgctat tttaggtcaa ttcttgtcag aagatgactg tcagttcctg aggaaaatat      1980
     ggcctccagg ggagaaagtc atgcttgtgt cggagcccag aatatccgaa agaatggtga      2040
     cagaggagag gctgaaggcg gctatgcagg aaatagaaaa gaccgtagaa acgaaggtga      2100
     agactacact ggagtggatc actgaacaac agaaggaatt ctttgatatg caagcaaaac      2160
     tcaacaaaga gttaatcgaa agcacgcttt caaaaatgac agaaggcata cagaagcaga      2220
     aagagatcga agctccaaag caagacaagg ttgagaatga tacaaaagtc agatcgtggc      2280
     taaggtgggc aacgactaaa accaccccag ggaccaaagc tgctccaaaa ataaaaaaca      2340
     tagaagacgt ggatattgaa ctgaagatca ggcagggtgt aaaggaatac gaagaaagga      2400
     acagactagg agcggatcta aggctaaagc ccaccattga cgaaagtcta ctggaagaag      2460
     aaaactttgt agttccaatc cagaagaccg ggaccgagga agagggaatt gggagaaagc      2520
     atctctgctc tccgacacct tcattgttta ggacgacaga gaaatcagga tgaggaattg      2580
     gaagaaggag aagtcaatga agctcaagac tgggagggta aacaaatcat cccaggtaag      2640
     attgtaatga caacagggaa atcacccaaa actcagatgg atctgatcga ttgacatgag      2700
     gccgtcacca gaagggcaaa caagaccaca agtaaatatg atatgaatca tataggaata      2760
     tctgatggag taaatggggt aagcaataat aatctaaaca tagttaaaat tatagaagat      2820
     aaaattaaag aatcgttagc taaggataat aagggaggaa atggcggaat aaacccaact      2880
     aatgacagta acaagaataa aatcataatt gaggtttcta gcaaagagag taatgtgatg      2940
     cgaagttata agttaactac tgggatgaag tttgagattt ttgaagatta tttgatgtct      3000
     gaggttaaaa ccaaaaggtt agactatgtg tttgataaaa agaaatgtga ggatgtgaat      3060
     gaacctaaat taattgagaa taagcataga gttcgagata tcataatcaa tcatattgac      3120
     atagaatatt acactaaaat gattgatatt aaagaaacta ttgaaatggt ggaaaaacta      3180
     aaggaattaa aaaggtttga aactagaatc atgcggttaa ctgcaagaaa cgatttaaac      3240
     aacttaagat atgatgtaaa taagcataaa gcttctgaat tttgggattt gtttgaggaa      3300
     aaagtgaaag tatatgaaaa tacgcctaat gctgataaat taccggaaaa aagataaaaa      3360
     gaatctgttt atacaagcaa tcaaagatgc ggtgcccaac gtaactgtga cggattgtct      3420
     acttgaggaa tcgactgggc gagaaatgac gtacagtcaa ttaaaaaaat ttattttgca      3480
     ggaggaagct ttgagaccgc agaggcaacc acctaagtcc gcgttcaacg ccggatttcg      3540
     aggaggcaag agaggagagc aaattcagag aagagggaag gatgatgtca ggtattattc      3600
     gtgcggcaag aatggacaca tcagcagaga ttgtccgacc ccaggagagg tggtatgtta      3660
     caattgtaac aaggttggaa atcacatctc tagccagcta gcaaaagggc gaaattggaa      3720
     cctgctcaca accaaggacg tggaagacca gactggacgg gccaaggagg ccacaaccaa      3780
     ggatccacga gaggtggtgg cgcaggttcg attaaccgag gacgtggagg aaacagagga      3840
     cgaggaggca gaagtgctag aggcagaggt acctcagccc atttcggcta catggaaaac      3900
     ccagagcagg atcagtatta ccaaggtaaa ttaaattgta atttaattga tagaaatttg      3960
     aagtataata aaattactaa atttatagcg gattctggtg caacagagca tctgagtaaa      4020
     tcgaaattaa tttttgagag attgagtgaa aatgaagtga atgaaattaa ttgtgcgaat      4080
     aagaataatt atctgagtac tcagggaaaa ggttatgtta gaattaggac agaaaatggt      4140
     aaggagttaa taatgtcaga tgtattgtat tctaatgagt tgtcggaaaa cttattgtca      4200
     ctaaagaaat ttgttgatca aggactcgaa gtctatttaa acaataaagt aatcaatata      4260
     tttgatccga aatcccaaga gaatttatga ccggaaagta tgaaaatcca ttttggctaa      4320
     ttaaattaaa gattgcaccc aaaggcaaga acgagattga agtgtctaaa gcttttgctt      4380
     taataagctc attagaacag aatcatccat acaataccag gagtaaggga aatgaattaa      4440
     gtcaggtaga agagagggtt gaatctaaaa atgaggagaa tatggaaaaa ttagagacat      4500
     atgaaaacac agaaaattca agtctaggag atagaatatc tgatttatta catactgcta      4560
     cagatagaaa ggttcatgta atggaggatt gcaatggctc taatgataat cttgagattg      4620
     attataaaag tagatcatgt gaatcaatta ataaaattga caaagccatg atttggcatt      4680
     taagactagg acatgtatcg gctatgtaca tcagaaaact ggcagaacag tttcctgaaa      4740
     tacttgatat aaaaggagta aatgtagaag aaagtgttat taaatgtgaa gtgtgtctaa      4800
     taactaaaag ttgcaaactt cctttcaata aaattaggac tagagcatcg aagccattgc      4860
     aaattgtcca tgcagacacg atgggaccta ttagtccagt ttcatttcca aaaggctata      4920
     agtttgttgt ggttttcata gatgattatt cgagaacgac taacatatcc tattagacaa      4980
     aaaactgagg ttagcaaatg tctagtagaa tttattagga gtgtcagaaa cgtgttaggt      5040
     tcagatgaga agttttgcta tttgaggtgt gatagaggga cggaattcac aggaaatgca      5100
     atgatagatg ttctggataa gtttggagct gaactgcaat tggcatgccc agacacacca      5160
     gaagataatg gtgtggctga gcgtttcaat aggactattc agagcaagat aagagcgtgg      5220
     atgtttgact caggtttacc ttctacgatg tgggatttgg cagtgaaagc gagcgtatat      5280
     gtgtataatc gaacgccgca taagtcttat gaaatgaaaa ttccgataaa tttgttaaac      5340
     tcgaaaattg atagcaattt aagacagata aaaaggtttg gatgtgtagc ttatgtaagg      5400
     gcaactagaa atgagggcac tacgtttagc gtcaaaggaa tcaggagttt tatagtgggt      5460
     tatattccaa cagggtatat tttatataca cctgaagaga aaaggttata tgagagtaga      5520
     catgttaaat gcatagagga ggtagtgtac aaagattatt ttgataaaag agagtctgac      5580
     gaagagttat tcaaaataga tatagaggat gaggttgatt gtcaacaagt agagcaggag      5640
     aggaaaagtc aagaaaatat gagtcaggtt gatgttatag atgtaaacaa actagttagc      5700
     tcagaagaag ttgagtccaa tgataaagtg aaagaaacta aaagaaagag aggtagaccg      5760
     aaaaaattga ccaagcagtc agtgatgttt tgttcagagg cgaatgaaaa tactgaacaa      5820
     acagaaacaa gggattttgc acttcatgca ctattagcta aaatccaggg tgatccacag      5880
     acatataggg aagcagtaag ctccaaagat agtgaacact ggttcaaatc tatacaggta      5940
     gaactagatt taattaaaga taaggaagtc tatgaaataa tagaaagacc gaaaggaaga      6000
     atacgtatgg gaaagcccaa tgtaattgat tcacgatggg tcttcaaaag gaaaattgat      6060
     aagcaagaaa aaactaaatt caagagtagg ttagtcatta ggggattcaa ggataagaat      6120
     gcgtatgagt tgagtgaaac gtatgctccg gtatctagga tgtccttgat tagatctttt      6180
     cttgtgattg caaataaata tgatttgaaa ttgaagcagc tagatgtaga aactgcattt      6240
     ttatatggag atttgtctga ggaaatactc atggaaatac cagaagggat tatggttagc      6300
     aaagaataca gaaaaaagtt tgtttggaaa ttgaaaaagg ctttgtatgg actcaaaata      6360
     agtccaaaga aatggaataa taaatttaca gctgtcatga atgaattacg ttttatttct      6420
     agtgacatgg acccttgttt atttttcaga caatctaatt acggggtgat gattgtagtt      6480
     ttatatgtag acgatatttt gttggcaggc aacaatatga cagaactgac tgagtttagc      6540
     tcaaagttaa gtaggaagtt taaaattaag gacttgggta aaccaaaaga gtttttgggg      6600
     attaaaattg agagatgtga agaaaagaaa ataattaaat taaatcaaac gaagtttata      6660
     gataatatgt taaaaagatt tggctttgat aaaattagat ctgtcaatac tccgatagca      6720
     tcaacacaaa tcacgaataa agataggaaa actcgagaga ctgagtatat tgtatctgag      6780
     gctgttaata acaggttgta cagagaagct gtaggttctt tgttgtattt ggctggtgtg      6840
     acaaggccag acatatcgtt tgctgtgaat gtcttgagca gacatcaggt agctccaaca      6900
     aagtatgaat ggaaaatggt acaaagagtg ttccaatatt tgattggaac acgccattac      6960
     tcattgatat attcaggaaa agaaaattac atgaaagctt attcagatgc gagcttgtcc      7020
     gattgtggag gttctctgac gacttgtggc tatgccatac aattgtacgg agacacagtg      7080
     gactggaaga cacacaaaca gcaaagcttg gccttgtcga catgtcaggc tgagtatgta      7140
     gccatgagcg aagcatgcca agctatttta gctctgcata attcagtttg ttttatacta      7200
     aggaacgaca tgtatccaat agatctattt tgtgataata tggcagcaca agcatgcgct      7260
     aacacagatg gtggtaatag gctgaggcat atggttgaaa ggaaagagca ttatattaaa      7320
     gagtgtgtga agcgaggtta cgttaagata acatgggtta aatctgctga tcagttagca      7380
     gatatattta ccaaagccct atcctttcct gtgcatgaaa agttatcctt attactacta      7440
     aatatgattt ataactaata tatgcctcat gttacagaag aaccctggga gccacagact      7500
     ggagatgagg aggaagaata agtctacgcc agaggcactt ggtccagagt tccaaataat      7560
     agtcttatca agacataagg acataacgcg tatggagaga gag                        7603
//
ID   Copia17-NVi_LTR repbase;    DNA;    INV; 218 BP.
XX
AC   AAZX01010587;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia17-NV;
KW   Copia17-NVi_I; Copia17-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-218
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1151-1151 (2007).
XX
DR   Genome; AAZX01010587; Positions    5479    5696.
XX
SQ   Sequence 218 BP; 50 A; 52 C; 50 G; 66 T; 0 other;
     tgtgggaata tatatagacc atacgcatta tgcccatgta caggagtggg gagcaccatg        60
     ttggcatctc cgtgagaagc ggcgctgcgc gccacttgct tccgagctac tgatcggtgt       120
     gcatcgcctg taactcttat cgaataaagc cttttactta cgaccgaatc ttttgtgtat       180
     ctttattgtg agcacctacc tagtctgtta ttctaaca                               218
//
ID   Copia18-NVi_I repbase;    DNA;    INV; 4231 BP.
XX
AC   AAZX01010628;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia18-NV;
KW   Copia18-NVi_LTR; internal portion; Copia18-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4231
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1152-1152 (2007).
XX
DR   Genome; AAZX01010628; Positions    9186    4956.
XX
CC   Positions [1603-2106] - Integrase core
CC   'GCCCG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..1598
FT                 /product="Copia18-NV_I_2p"
FT                 /translation="MAGELSTRHVAKFDGKNFAAWKFQINAVLIAHNLEGI
FT                 VTGTRTKPTDATTNETKQWVKDNAKAMYVLSSALEPGQLNCLLSCVTAKEM
FT                 WDKLSVIHEQKTATHKLLMMQRFHEYKMDLSDSVAQHVAKVQNLAAQLLDV
FT                 GENLPDIVIMSKILTSLPMKYRNLRTAWSSVATEKQTIEHLLERLIEEENL
FT                 LRIDEEEEAVALAAFSKKRESVGTGTKESGGASVKNSKQGGDRSNKKTYKC
FT                 FSCHKKGHFARNCPEKKEKQQNSNQTSNASANVAFVAERRVSSKNELDEAK
FT                 VSSWKPSSEQERKLLETNTEEVWFIDSGASTHVTHRKEWFIEYRSRRDGSS
FT                 IVLGDDGECGVAGEGTIAVNRLIDDKWIEARIENVLHVPGLKRNLLSVGRC
FT                 TSLGYQFEFKNRYVELKKHKEIIAVGVIQSNAIYRMFLQVIKPDRKEINIT
FT                 STSMKVWHERLAHLNVRAMRDLTSGDSVQGVRIVEKEGFFCEPCQLGKSHK
FT                 LPFKKKN"
FT   CDS           1651..4206
FT                 /product="Copia18-NV_I_1p"
FT                 /translation="MPTESVNGARYYVLFKDDSSGYRYIYFLKNKSDVTEK
FT                 FIEFESTVRNLRGNSMKFLRTDNGREYVNDRLKQYLSQHGITHVNTAPYTP
FT                 EQNGQAERENRTIIEAARTMLKARDLPNYLWAEAVNTAVYLLNRTTVKATH
FT                 SNKTAYEVWTNKKPNLEHVRTFGCAAYMNVPKQLTNKLSDKAVALIMVGYQ
FT                 DNSSNYRLFNPITKKVHVSRHVIFNEDGRVKETTNQESDEDWFLPGDDVKV
FT                 PDEVHGEHENARDQPTPEPDEPVPEPAGGHDNIGDDQADVPGEGEAPIHSR
FT                 LRDRSKIKPPSKYLVNIAVFRPPETYDEALERPDAEKWRKTIEYELRQHEK
FT                 NNTWELVPRHHGMRTIDSKWVLKSTPGLGNQDVFYKARLCARGFMQKEGLD
FT                 YTETYAPVVRYDSLRMLLAHVALEDLETVTFDIKSAFLYGDLEEDIYMEVP
FT                 KGVRVNTRGMNARNDECRSSVDANECKNVLVCKLRRSLYGLKQAPRCWNTK
FT                 FKKFLSSFNFYESQADKCIFIGKCDDHKVYLALFVDDGLVICKSKVVLNNI
FT                 LSELRKQFEITVGDSCYFVGLEIYRNREEKSVIICQQAYIQHVIDRFNMND
FT                 ANPVCTPAETSLYLQKADKNVANKNNVPYREAIGSLMYLAMTTRPDIAYIV
FT                 CYLSRFQNGYDSRHWQALKRVLAYLKGTKYLGLEYKLNKEPCNLIGYSDSD
FT                 YAGCLETRRSTSGYVFFMAGAAVSWTSRRQELVTLSTTESEYVAAATAARE
FT                 ALWLKRFLSDFGYTCVTGILLHVDNKSAICLTKDSKNHRRTKHIDTRYHFL
FT                 KERCETGDLSVTYVASREQRADVFTKALPKNLFIEMRENLGLVDNSYLIA"
XX
SQ   Sequence 4231 BP; 1369 A; 860 C; 1024 G; 978 T; 0 other;
     ggttatgggc ccagatctac gcgtgagtga gaagtgatta ttttctttgt gtcgcgagtg        60
     aacgaacatt taacgtgtga taaaggaaga tggccggaga actgtctaca cgacacgtgg       120
     cgaaattcga cgggaagaat tttgcggcct ggaaattcca gatcaacgcc gtgttaatcg       180
     ctcacaactt agagggcatc gtaacgggta cgcgaacaaa accgacagat gcgacaacaa       240
     acgaaacaaa acagtgggtg aaagacaatg ccaaggccat gtacgtgtta tcatctgcac       300
     tggagcctgg acagctgaac tgcttgctgt cgtgtgttac agccaaagaa atgtgggata       360
     agttgagtgt catccacgag cagaaaacag ccactcacaa gctgttaatg atgcagcgtt       420
     ttcacgaata caaaatggat ttatccgata gtgtcgcaca gcatgtggca aaagttcaga       480
     atttggcggc gcaactgctg gacgtaggtg agaatcttcc ggacattgta ataatgtcga       540
     aaatcctcac gagtctgccg atgaaatatc gcaacttacg cacagcttgg agtagtgtcg       600
     caaccgaaaa acaaaccatc gagcatctac tggaacggct gattgaggag gagaatcttc       660
     tacgcatcga cgaagaagag gaggctgtag ctctagcagc tttttcaaag aaaagagagt       720
     cagtaggcac aggcactaag gagtcaggag gtgcaagcgt aaaaaattcg aagcagggtg       780
     gtgatagaag taacaagaaa acctacaaat gcttctcgtg tcacaaaaag ggacacttcg       840
     ctcgaaactg tcccgagaag aaagaaaaac aacagaattc gaatcagacg tctaatgctt       900
     ccgcgaatgt agcctttgtg gccgagagac gcgtcagttc taagaacgag ctcgacgaag       960
     caaaagtctc ttcttggaaa cctagtagcg agcaagagcg aaaactgttg gagactaaca      1020
     cagaagaagt ctggtttatc gacagcggcg catcaactca cgtgacccat cgaaaagaat      1080
     ggttcatcga gtaccgatca aggagagatg gcagcagcat agtcctaggt gacgatggtg      1140
     agtgcggtgt agccggcgaa ggtacgatag cggtgaacag actaattgac gacaaatgga      1200
     tcgaagcgcg aatcgaaaac gtacttcacg taccaggctt gaaaaggaat ttgctctcgg      1260
     ttggtcggtg cacatcgctc ggttaccagt ttgaattcaa gaatagatat gttgagttaa      1320
     aaaaacacaa agagattatc gcggtcggag tgatacagtc aaatgccatc tatcgtatgt      1380
     tccttcaagt gatcaaaccc gacaggaaag agataaacat aacctctacg agtatgaaag      1440
     tctggcatga gcgcctggca catcttaatg tgcgagcgat gagagatctg acgtccggcg      1500
     actcagttca aggtgtacgc atagtagaaa aagaaggttt cttttgtgaa ccttgtcagc      1560
     tcgggaaatc gcacaaattg cccttcaaga aaaaaaattg aacgagcgag cctgccaggt      1620
     gaatacttcc atagtgacgt atgcggaccc atgccaacag agtctgtgaa tggcgcgaga      1680
     tactacgtct tattcaagga cgacagtagt ggttatcggt atatttactt cttgaaaaat      1740
     aaatcagacg tcaccgaaaa gttcattgaa ttcgaaagta ctgttagaaa tcttcgcggt      1800
     aacagtatga agtttttacg caccgataat ggtcgtgaat acgtgaatga taggctgaag      1860
     cagtacctga gccaacacgg aataacacat gtgaacacag caccatacac gccggagcag      1920
     aacggccaag cggagcgcga aaaccgaacg atcatagagg cagctcgcac gatgttgaaa      1980
     gccagagact tgccgaacta cttatgggca gaggcggtca acaccgcagt ttatctatta      2040
     aacagaacaa cggtcaaggc tacccatagt aataaaactg catatgaagt ttggacaaac      2100
     aaaaagccca acttggagca cgtacgaacg tttggctgtg ctgcttacat gaacgtaccg      2160
     aagcagctga ccaacaaact gagtgacaag gcggtagctc tgatcatggt gggatatcaa      2220
     gataactcca gcaactatcg tctgttcaat ccaatcacca agaaagtgca tgtatcgaga      2280
     catgtaatct tcaatgaaga tggtcgcgtt aaggagacaa caaatcaaga gtcggacgaa      2340
     gactggtttc tcccaggcga tgacgtaaag gtaccagacg aagttcacgg agaacacgag      2400
     aatgctcgag atcaacctac ccctgaaccc gacgaaccag tccctgaacc agctggaggt      2460
     cacgacaata tcggagatga tcaggctgat gtaccaggag agggcgaagc tccaattcac      2520
     tcacgtctac gagacaggtc taaaattaag cctcctagta agtatttggt aaatatcgct      2580
     gttttcaggc ctcctgagac gtacgacgaa gcactggaaa gaccagatgc cgaaaaatgg      2640
     cggaagacca ttgaatacga actgagacaa cacgagaaaa acaacacctg ggagcttgtt      2700
     cctagacatc acggaatgag aaccattgac tcaaaatggg tcttaaaatc aactcctgga      2760
     ctcggaaatc aagatgtttt ctacaaagca cgtctatgcg caagaggatt tatgcaaaaa      2820
     gaaggactcg attacactga gacgtatgca ccagtggtgc gatatgattc tctgcgcatg      2880
     ctgctggctc atgtcgccct tgaagatttg gaaactgtaa cgttcgacat caagtcagcg      2940
     ttcttatacg gcgatttgga ggaagacatc tatatggagg tgccaaaagg ggtgcgtgtg      3000
     aatactcgtg gaatgaatgc aagaaatgac gaatgccgct caagtgttga tgcgaatgaa      3060
     tgtaaaaacg ttttagtctg taaactgcgt aggtctctgt atggtcttaa acaggcaccg      3120
     cgttgctgga acactaaatt taagaaattt ctgagttcgt tcaacttcta tgaaagtcaa      3180
     gctgacaaat gtatattcat tggcaaatgt gacgatcaca aagtatatct cgctctcttt      3240
     gtagacgacg ggctcgttat ttgtaaatca aaagtagtct taaacaatat tttatctgaa      3300
     ctgcgaaaac aattcgaaat aaccgtaggc gactcatgtt attttgtagg attagaaatt      3360
     tacaggaaca gggaagagaa aagcgtaatc atatgtcagc aagcctatat acagcatgta      3420
     atcgatagat tcaacatgaa cgatgcaaat cctgtatgta cacctgcaga gaccagttta      3480
     tacttgcaaa aggcagataa aaatgtcgcg aacaaaaata acgtaccata tcgcgaggcc      3540
     ataggttcgt tgatgtacct ggcaatgact actagacccg atattgctta tatcgtttgt      3600
     tacctaagta gatttcagaa tggttacgat agtcgtcatt ggcaggcatt gaagcgtgtc      3660
     ctggcctatc taaaaggtac caagtaccta ggacttgagt ataaattaaa caaagaacca      3720
     tgtaatctga tagggtactc agactccgat tatgctgggt gtttggaaac tagaaggtcc      3780
     acttcgggat atgtattttt catggctgga gccgcagtgt catggacttc cagacgccaa      3840
     gaattagtaa ccctcagcac gaccgagtct gagtatgttg cagctgccac agcagccaga      3900
     gaagcactgt ggttaaaaag atttctgtcc gatttcgggt atacatgtgt cactggcatc      3960
     ttgttacatg tcgacaacaa aagtgctatt tgtttaacga aagattctaa aaaccatcga      4020
     agaaccaaac acatagatac ccgatatcat tttttaaaag aaagatgcga aactggagat      4080
     ttgtctgtaa cttatgtagc atctagagaa cagagagcag acgtgttcac aaaagctcta      4140
     cctaaaaatt tgtttattga aatgcgtgaa aacttaggtc ttgtagacaa ctcatatcta      4200
     attgcttgat cagtgtgata aacggcggaa g                                     4231
//
ID   Copia18-NVi_LTR repbase;    DNA;    INV; 203 BP.
XX
AC   AAZX01010628;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia18-NV;
KW   Copia18-NVi_I; Copia18-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-203
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1149-1149 (2007).
XX
DR   Genome; AAZX01010628; Positions    4955    4753.
XX
SQ   Sequence 203 BP; 51 A; 62 C; 37 G; 53 T; 0 other;
     tgttaaagcg agtttctcac actataagaa tcgcgaacgc gagcgacctc tggtcgtagg        60
     ctggcgtatg cgcctgacgt ctcctcgccg acgctctctc tctcgctcct tacctcgagc       120
     cgttcggacg ctgtcactta ctaactacaa ataaatacct ctttacgata aagtgtcttc       180
     tcattcaaca cacaacaata aca                                               203
//
ID   Copia19-NVi_I repbase;    DNA;    INV; 2679 BP.
XX
AC   AAZX01010888;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia19-NV;
KW   Copia19-NVi_LTR; internal portion; Copia19-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2679
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1150-1150 (2007).
XX
DR   Genome; AAZX01010888; Positions    5707    8385.
XX
CC   Positions [45-557] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..1667
FT                 /product="Copia19-NV_I_2p"
FT                 /translation="MCSLSSPTPSDVSGKFFHSDVCGPMPVDSLGSARYFV
FT                 SFKDDFSGYRYVYFLKHKSDVYDRFKEFERLIYNKFGHSMKVLHTDNGGEY
FT                 CNALMKNLLEEKGIKLETTAPYTPQQNGRSKGDNRTIVESVSTMLLRSQAP
FT                 QYLWAEAVSTAVYVLIMTVTKRKPDTTPWECWTKRKPDYTHLKIFGCLAFE
FT                 HVPKALRKKFAKKANKVIFVGYEKESRNYRLYNYNTGKMSVSRNLTFDESW
FT                 FIEAIKPAEIVIFHAPIPDNGPSEENFKATDNIGGTEASESIHEAANEQEK
FT                 SPSKQPQQQARTQRPASGNTNKKIDLCKVQKPDCMPELSSCRQLRIRENIK
FT                 RSAKYEANFIKIHEPDSYQGAMAGPNAAHWKVAIHEELLTHDKNKTWTLVA
FT                 RPNICTVIDSKWFFRVQEAKAGKENRLKARLCARGFRQKYGINYQETFAPV
FT                 VRYDALRVMLAIAAHRDLEIIQFDVKTAFLHGQLEEDVMEIPEGLSDFYNI
FT                 SDKNLVCKLNKSLYGLSKRQGVGTLPLKHLYLNTVLTVVTRRVQFLLDV"
XX
SQ   Sequence 2679 BP; 869 A; 487 C; 608 G; 715 T; 0 other;
     ataggttatg gacccagagt acgcaaagtc gcatgtgctc cctttcaagc ccaacaccga        60
     gcgacgtgag tgggaaattt ttccacagcg atgtctgcgg accgatgccg gtggactctc       120
     tgggaagcgc taggtatttt gtatcgttca aagacgattt ttctggctat agatacgtgt       180
     attttttaaa acataagtcc gatgtgtacg atagatttaa agaatttgaa cgtttgattt       240
     ataacaaatt tggtcattcc atgaaggtcc ttcacacaga taatggcggg gaatactgca       300
     acgctctcat gaaaaatctt ttggaggaga aaggtatcaa gctggagact acagcaccat       360
     acacacccca gcaaaatgga agaagcaaag gggataaccg aacgatcgtt gagagtgtct       420
     ccacaatgct ccttcgcagc caagcaccgc agtatctctg ggccgaggca gtcagtacgg       480
     cagtttacgt attaatcatg acagttacaa aaagaaaacc agacaccaca ccatgggagt       540
     gttggactaa gaggaaacca gattatacac acttaaaaat ttttggctgt cttgcttttg       600
     aacatgtacc caaggctctt agaaagaaat ttgcaaagaa agcaaataag gttatattcg       660
     taggatacga gaaagagtct agaaattatc gcctttataa ttataacaca ggaaaaatgt       720
     cagttagtag aaatttaacg ttcgacgaga gttggtttat tgaagccata aaaccagctg       780
     aaatcgtcat ttttcatgcg ccaataccag ataatgggcc atcggaagaa aattttaaag       840
     ctactgacaa tataggcggg actgaggctt cggaatcaat tcacgaagca gctaatgaac       900
     aggaaaaatc accttccaag cagcctcaac aacaagcccg cactcaacga ccagcgagtg       960
     gaaatacaaa taaaaaaatt gacttgtgca aagtccagaa gccggattgt atgccagagc      1020
     tcagttcgtg tcgccaactt agaattcgtg agaacatcaa aagatcagct aagtacgaag      1080
     ctaattttat taaaattcat gagcctgatt cttatcaggg agcaatggcc ggtcccaatg      1140
     ctgcacactg gaaagtagca attcatgaag aattattgac tcacgacaaa aataagacgt      1200
     ggactctggt agcaagaccc aacatctgta cagtcatcga ctcgaagtgg tttttcaggg      1260
     tgcaggaggc taaggctgga aaagaaaatc ggctcaaagc tcgactctgt gccagaggtt      1320
     tccggcagaa atacggaatt aactaccaag aaacattcgc acctgtggta agatatgatg      1380
     ccctacgcgt catgcttgcc attgcagccc atcgcgacct tgaaattatt caattcgacg      1440
     tcaagacggc atttcttcat ggtcagctgg aagaggatgt tatggaaatt cccgaaggat      1500
     taagtgattt ttataacatt agtgataaga atttagtatg taagcttaat aaatcgcttt      1560
     atggcttaag caagcgtcaa ggtgttggca cactaccttt aaagcatttg tatctgaata      1620
     cggttttgac tgttgtaacg cggagagtgc aatttttgtt ggacgtataa gtgatgttgt      1680
     agtgtacata acattatttg tagatgatgg tctaatttta acaaaagatt gtaatgtaat      1740
     tgacaaagtt gtaaagattt taaaaaatag gtttgaaatt atggtgtgtg agttagatat      1800
     ttttgttggt atgagagttg tgcgtgatag agtgagaaaa accatattcc ttcatcaaac      1860
     cgagtatgct tacaaagtcc taaagcgttt tgacatgttg gacgccaaaa cctcatgtac      1920
     cccagttgaa aagggtgttg atctcgtttt catgaaggaa catgagtcaa atcatgaaaa      1980
     attgccatat agggaactaa taggttcttt aatgtttctt tttaccgtgt cgcgtcccga      2040
     tatcgcgtat gacgtgaacc ttatgagtag atatttagac aattttaata gaaatcattg      2100
     ggaagcggcg aaaagaattt taagatatgt aaaaggcact ttaaattacg gaattttgta      2160
     caaaagcagt gggagcatgt taaaattaga agcttattgc gactcggact acgcaggcga      2220
     ccaggatgga aggaggtcaa cctctggttt catttttaaa tattgtaatg gtccagtctc      2280
     gtggtgtgct cagagacagc gtaccgtgtc cttgagtagt acagaagcgg agtatatatc      2340
     cgcatctagc gagacaagag aagccatgtg gctgagacag ttgcagtacg atgttggatc      2400
     tccatgtgct ggcgcaacca cattatatat tgataaccaa agtaccatcc aattgatgaa      2460
     aaatcctgta tttcacaggc gcacaaaaca tatagaggtc catcatcatt atgttcgaca      2520
     aaaatacgag gcgggcgtta taaaagtaaa gtatataccg agtgaattgc aactcgctga      2580
     cattttcacg aaagcgctaa cgcgagaaca tcatgagcga atgtatgagg gcataggact      2640
     ttgtagtatc tttgtatgaa aatgcttaaa tagcgggag                             2679
//
ID   Copia19-NVi_LTR repbase;    DNA;    INV; 345 BP.
XX
AC   AAZX01010888;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia19-NV;
KW   Copia19-NVi_I; Copia19-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-345
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1146-1146 (2007).
XX
DR   Genome; AAZX01010888; Positions    5362    5706.
XX
SQ   Sequence 345 BP; 93 A; 72 C; 75 G; 105 T; 0 other;
     tgttgagaat attcgcgtgt tttcatacgt atgtaaatag ggacacagtc accgcgtgtg        60
     tacacactct atggtctcac gcatcgagcg tatttgtgtg agagtgcttc atagcgttac       120
     ttatagcgat tttcatcgcg tcagtcctga tcgagtcgtg gtaccgatca gaagcctaaa       180
     tcaacttatc ctcagtcgta gcattggttg tcttacataa tcttgtatag tccagggaac       240
     gggagcagtg tcgatagatg ttatacaatt attcgcgact tattcgtaag aaaactaagt       300
     gtccacaaag aacatctcca ctgtgtaatt aattcccaag gtcca                       345
//
ID   COPIA2-I_AG repbase;    DNA;    INV; 4232 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   COPIA2-I_AG is an internal portion of the COPIA2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA2-I_AG; COPIA2-LTR_AG; COPIA2_AG; Copia clade; Salto 7;
KW   integrase; reverse transcriptase.
XX
NM   COPIA2-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   578-2937
RA   Parkes J.R., Warren M.A. and Crampton M.J.;
RT   "Salto, a Ty1-copia group retrotransposon from the malaria vector
RT   Anopheles gambiae.";
RL   Direct Submission to Genbankac. AF93,.
XX
RN   [2]
RP   1-4232
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA2_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (31-MAR-2003).
XX
DR   [2] (Consensus)
XX
CC   COPIA2_AG is a young family of autonomous Copia-like LTR
CC   retrotransposons.
CC   COPIA2-I_AG, an internal portion of COPIA2_AG is flanked by 99%
CC   identical COPIA2-LTR_AG LTRs. The COPIA2-I_AG consensus sequence
CC   was reconstructed based on multiple alignment of 3 copies.
CC   The consensus sequence encodes the 1348-aa COPIA2-I_AGp protein
CC   (positions 189-4232). Partial protein (ac AAL55241.1) previously
CC   submitted to GenBank by [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           189..4232
FT                 /product="COPIA2-I_AGp"
FT                 /translation="MDFSKVGVIRRNNRNYRSWAFKVQMLMMREGTWTYVD
FT                 PGVAPTPVTPEWTEGDSKARATIALLVEDNQHNLIMTKNTAKETWDALKAH
FT                 HHKATLTGKVSLLKEICNANYREGENMEDFLYGMEDHYSRLENSGEKLSAN
FT                 MQVAMILRSLPKAFDALTTALESRSDKELTMDLERAKLIDESEKLYGGKVQ
FT                 EERVLKAKSEAKPGACFFCGQPGHKKRECKEFLNRKSSGEGEKKKKIKPNK
FT                 EQQVKTVRENDASSFTFMVRQPEIRGNDRSWLIDSGASSHMCSDKSAFTVM
FT                 EQSLRSNVTVADGSENRVEGVGDCLIKCAVEYGEIIEITLRGVLYVPTLEG
FT                 NMISIGKLAEKGVRAVFDNTGCKLVYGNTVVAVADKVSDMYWLRIAQDRVM
FT                 KSVVKEHTKNCQHTWHRRLGHRDPAVIGEMKRRDLVSGLEVVDCGIRWTCE
FT                 CCIECKMARSPFPPVAEKTSTEVLDIIHSDVCGPMEETTLGGCRYYMTLID
FT                 DHSRYTFVYFLKKKSEAEDKFREHVKLVQNQFGRKPRIIRSDQGGEYSNKA
FT                 LRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFW
FT                 AEAINTTCYLQNRLPSAAVERTPFEIWFGRKPDLTNLRLFGCVGYVLIPSV
FT                 KRKKLDVKAERMTFVGYSGEHKAYRMLNTQTGEIQISRDVRFLEIDDGSKE
FT                 QTYGDPKIEDNPTESVEIEWSLDETKREAKTNVANDTISESEFYGWDCSDD
FT                 GWPRGFWNDNDNNWLRGLWDDDDAEAGAAMPEAVLDAVPEAMPAAVPEVSN
FT                 TPVRRLQRVTAGVPPARYDEEVYLVKESVAEPKTYKEAVSGPQSAEWKIAM
FT                 AEEMQSHQENGTWELAELPPHRKAIGSKWIFKCKADEDGHFVRYKARLVAQ
FT                 GFCQKFGTDYDLVFVPVVKQITFRTMLVLASKRKMLTKHVDIKTAYLHGLL
FT                 KKEIFMRQPQGFESDNPNEVCRLHRSIYGLKQAARVWNTKIDDVLKTMGFI
FT                 QSTADPCLYIREKAGKSIFVLIYVDDVIVICNTEEEFSEVVHVLTLNFTIS
FT                 VMGNLRFFLGIRIRRNDGRYCMDQRAYLERVLERFGMLDAKPSKFPMDPGF
FT                 LKRKEENGRKLDSPKAYQSLIGALLYAAEISRPDIAIATAILGRRVQDPSE
FT                 ADWNEAKRILRYLKGTLDSVLYLGSGGQKLECFVDADWAGDESDRKSNSGF
FT                 VFKFGGGLIGWGCHKQKCVALSSTEAEYVSLAECLQEVKWILKLMADVGEQ
FT                 LDGPVLVNEDNQSCIALTKGDRAERKAKHIDTKFNFVEDMVRDGIVKLQYC
FT                 PTEHMQADLLTKPLQAVKLRQLREAIGIKPFSVEEE"
XX
SQ   Sequence 4232 BP; 1188 A; 859 C; 1239 G; 946 T; 0 other;
     ggttatgggc ccagctctgt gtggccagtt caattgaaaa gtgcgcgacg cggttcggaa        60
     agacagttat tttttcggtg tgaaaaaatt aggacatttc cggaaggtac gcagtgcggt       120
     taaggaatcg tgtgtttttt cgtggtgaaa gaaaaaaccc aaccgggaag gtttttgcac       180
     gggcaaaaat ggatttttcg aaagtgggcg tcatccggcg gaacaaccga aactatcggt       240
     cgtgggcttt caaagtgcag atgttgatga tgcgggaggg tacgtggacg tacgttgacc       300
     cgggtgtcgc gccgacaccg gtaactccgg agtggacgga gggtgattcg aaggcgcggg       360
     cgaccattgc tttgttggtt gaggataacc aacacaatct catcatgaca aagaacacag       420
     cgaaagagac atgggatgcg ctcaaggcac accaccacaa agccactctt accgggaaag       480
     tttcgttgct gaaagagatt tgcaacgcaa actatcgtga aggtgagaat atggaagatt       540
     ttttatacgg catggaggat cattattctc ggctggagaa ttcgggtgaa aaactctcgg       600
     cgaacatgca ggtggccatg attttgcgga gccttccaaa agcatttgac gcacttacca       660
     cagctttgga aagtcgttca gataaagagc taacgatgga tcttgagcgg gcaaagctga       720
     tcgacgaaag tgagaagctg tacggcggaa aggtgcagga ggagcgagtg ctgaaggcga       780
     aaagtgaagc aaaaccaggc gcgtgtttct tttgtggtca acctggccat aagaaacgag       840
     aatgcaaaga gttcctgaat cggaagagca gcggggaagg tgaaaagaag aaaaagatta       900
     agccgaataa agaacaacaa gtgaaaacag tgcgcgaaaa cgacgcaagt tcgttcacgt       960
     tcatggttcg tcagcctgaa attcgcggta acgatcggtc gtggctaatc gactcgggtg      1020
     caagttcgca catgtgtagt gacaaaagcg cgttcacggt aatggaacaa agcttgcgtt      1080
     caaatgttac cgtcgcggat ggcagcgaaa atcgcgttga aggcgttggc gattgcctga      1140
     tcaagtgtgc ggttgaatac ggtgaaataa ttgaaatcac gctacggggt gtgttgtatg      1200
     ttcctacgct ggaaggaaac atgatttcaa tcggtaaact cgcggaaaaa ggtgtgcgtg      1260
     cggtttttga caacaccggg tgcaagctcg tttacggaaa tacggtcgtc gcggtcgcgg      1320
     ataaagtgag cgatatgtat tggttgcgaa ttgcacagga tcgagtgatg aaatcagtgg      1380
     taaaggagca cacgaaaaac tgccaacaca cttggcatcg tcgtcttggg cacagggatc      1440
     cagctgtcat cggtgaaatg aagcggcgcg atttggtgtc ggggctagaa gtggtcgact      1500
     gcggtatccg ctggacctgc gaatgctgca tcgaatgcaa aatggcacgc tcgccatttc      1560
     caccagttgc ggaaaaaacc tcgacagaag tgctggatat aatccatagt gatgtgtgcg      1620
     gcccaatgga ggaaacgacc ttagggggat gccgttacta tatgacccta atagacgatc      1680
     atagtcggta tactttcgtc tattttctca aaaagaaatc ggaggccgag gataagtttc      1740
     gcgagcatgt aaaattggtt caaaaccaat ttggccggaa accgcgaatc attcgctccg      1800
     atcagggagg agaatactcc aataaggcgc ttcggaagtt ctgtgcggac gaagggataa      1860
     agatggagtt tactgcagca tattcacccc agcaaaatgg agttgcggag cggaagaacc      1920
     gatcgctaac ggagatgggt cggtgtatgc ttcgggatgc aggtatgcat aagcgatttt      1980
     gggcggaagc aatcaacacc acttgctact tgcaaaatcg attgccgtct gctgcagtag      2040
     agcgtacgcc attcgagatc tggttcggca gaaaaccaga tttgaccaac ctgcgactgt      2100
     ttggatgtgt tgggtacgta ctgattccgt cggtgaaacg aaaaaagtta gacgtcaagg      2160
     cggagcgtat gacttttgtc ggctattccg gcgagcataa ggcgtatcgg atgctaaaca      2220
     ctcaaacggg agaaattcaa attagtcggg atgtccgttt tcttgagatt gatgacggat      2280
     ccaaggagca gacatacggt gatcccaaaa tagaggataa tccgactgaa agcgttgaaa      2340
     tcgagtggtc tctcgatgaa acgaaacggg aagctaaaac taacgtggcc aatgatacaa      2400
     tctccgaatc tgaattttac ggttgggatt gttcagacga tggctggcca cgaggttttt      2460
     ggaacgacaa tgataacaat tggcttcgcg gactgtggga cgatgacgac gctgaagctg      2520
     gagctgcgat gccggaggcg gtgctggatg ctgtaccgga ggcgatgcca gcagctgtgc      2580
     cagaggtgtc gaatactccc gttcgtcgtt tacagagggt gacagctggc gttccaccgg      2640
     caagatatga cgaagaagta tatctggtga aggaaagtgt agcagaacca aaaacgtata      2700
     aggaagctgt gtccggtcct cagagtgctg aatggaaaat agcgatggca gaagaaatgc      2760
     agtcccatca ggaaaatgga acgtgggagc tagcggagct gccgccacac cggaaggcta      2820
     tcgggtcgaa atggatcttc aagtgtaagg cagatgaaga cggtcatttc gttcggtata      2880
     aagcacggct ggtggcgcag ggtttctgcc agaaattcgg gacggattac gacctggtgt      2940
     ttgtccccgt cgtaaagcag attactttcc ggacgatgct ggttctggcg agtaaaagga      3000
     agatgttaac gaagcacgtt gacataaaga cggcgtatct acatggtctt ctcaagaagg      3060
     agatttttat gcgccagcca cagggattcg aaagcgataa cccgaacgaa gtatgcaggc      3120
     tgcatcgcag catttacggg ctcaagcagg cagctcgtgt ctggaatacg aagatcgacg      3180
     acgtactgaa aactatgggt ttcatccaat caacggcgga cccatgtttg tacatacgcg      3240
     aaaaagcggg taagtccatc tttgttctca tttacgttga cgatgtgatc gtcatatgta      3300
     acacggagga agaattttct gaggtggtcc acgtcttgac actgaatttc acgatcagcg      3360
     tcatgggtaa cctaagattt tttctcggca tacgaattcg gcgtaacgat gggcgttact      3420
     gtatggacca acgagcttat ttggaacgag ttctggagcg tttcggcatg ctggatgcta      3480
     aaccgtccaa attcccgatg gatcccggct tcttaaaacg aaaggaggag aatggcagga      3540
     agttggattc gccaaaagcg tatcaaagtc tcataggagc tctgttgtac gctgcagaga      3600
     tcagcagacc cgatattgca atcgccacag ccattctggg caggagagtg caagatccat      3660
     cagaagcaga ttggaacgag gccaaacgga tactacgtta cctcaagggt acactggata      3720
     gtgtattgta ccttggaagc ggcggacaaa agctggagtg ttttgtggac gccgattggg      3780
     caggcgacga gagcgaccgc aaatccaact cggggttcgt gtttaagttc ggcggcgggc      3840
     tcatcggatg gggctgtcat aagcagaagt gtgtggcact atctagtacc gaggccgaat      3900
     atgtttccct tgccgagtgt ctacaggagg taaagtggat actgaaactg atggcggatg      3960
     ttggcgagca actggatggt ccagttctgg tcaacgaaga caatcaaagc tgcattgcgc      4020
     tgactaaagg agaccgagcc gaacgcaaag caaagcacat cgatacgaaa tttaatttcg      4080
     tggaggatat ggttcgggac ggcatcgtga aactgcagta ctgcccaacc gaacacatgc      4140
     aagctgattt gcttaccaaa ccgttgcaag cagtgaaact tcgacaactt agggaagcga      4200
     tcggaataaa accattcagt gttgaggagg ag                                    4232
//
ID   Copia2-I_Dmoj repbase;    DNA;    INV; 4016 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   28-OCT-2020 (Rel. 25.11, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2_Dmoj;
KW   Copia2-LTR_Dmoj; Copia2-I_Dmoj.
XX
NM   Copia2-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4016
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1022-1022 (2009).
XX
RN   [3]
RP   1-4016
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..4007
FT                 /product="Copia2-I_Dmoj_1p"
FT                 /translation="MKMEPLNMRIERLRDKDNWHLWCFMIRTLLEEDDDVL
FT                 AVCEGSLTCPTQESATYERDSKRFLKADKTARKIIIHSIERRPMELIVSCK
FT                 TAREMWIKLNSVYDMKSEENLSAIQKQFFDFKWIESESVDYNISKLEVLWS
FT                 KMKNLGSAVPETMLMSRILSSLPQKFNYFHSAWDSVEDSKRTLNNLTTRLM
FT                 TEEMRSKEQEVVPEESTALVAGNGKNKREHENKKKIMKCYNCGVMGHLKKD
FT                 CYRCYICKKKGHKSNTCHQRRNAGSQAENNQGESGESSRKGLIASRDGRED
FT                 DVWVIDSGASDHMSRRRDWYSTYEEFLEPLRIGVGNGKYITAHGKGNIDIE
FT                 TYVNNNKRATTMFNVLYVPEIVYNLFSIMSAAKRGVDCLIKNKGTQCLLRR
FT                 DNKIIATGSRFGNLLKLDANVLMPKLCNLTRKIESKESDSLQVWHERFCHQ
FT                 NVRHVRDYLKNKNIDFLENDFFCEGCAYGKQHRLTFHKNIDRATKTREIIH
FT                 TDVCGPIEVESIGKKLYFVSFKDDYSSYREVYFIRHKSEVFEKLQIFIQAI
FT                 QNQFHENIKEIHSDGGREYINKEVKLFFNKKGIKHIVNAPYTPEQNGVAER
FT                 ENRTIIEAARSMLHSNSELPLFLWAEAVNTAVYVINRTGPTKHGNKTPYEL
FT                 WFKKEPDIGNLKIFGTECFVHVPKEKRRKLDKKSIKGFIVGYVENCKGYRV
FT                 YVPNMRDVIISRDVCFKPENFTAQFKKPEILVDNSESETNESEYENNKIED
FT                 ESTEHNNSEMGRRLRDRSQIRMPDFYGCPVTFITQSLPLNYNEALKSDDKE
FT                 YWQTAMQEEINSLHENRTWVLVPKPENKKVINSRWVYTKKLNPDGSERYKA
FT                 RLVIKGYSQKEGIDYKETFSPVVRFDTVRFLLSVAAQENLFLGQFDVKTAF
FT                 LYGTLKENIYMHQPEGFEDGTSSVCKLLKSLYGLKQAPRCWTEHFANVIKN
FT                 LGFTQSIADPCFYIYSKNNDRILLTIYVDDGLIAASNEFLIDNLFENLSKE
FT                 FKITSTKNVTCFLGIEILKQPNGSIFIYQENYIKKILEKFNMINANIVSTP
FT                 VECNYDENVSEQNNCNAPYREAVGNLMFLQVVSRPDISFSVNVVSRELENP
FT                 KQHHWTLVKRIFRYLKGTMDLGILYSKNNNIFETYSDADYAGDKKTRKSTS
FT                 GILCKYANAAITWQSKKQQCVALSTTEAEYVSAALASKEMIWLKKLFFDCN
FT                 INLSNYILFIDNISAIKLIKNPEFHQRSKHIDVKYHFVRDLFEKDEIDVRY
FT                 VKSEEQIADIFTKALPKPRFLYLREKLGMKNKGQICYRDVEF"
XX
SQ   Sequence 4016 BP; 1467 A; 510 C; 869 G; 1170 T; 0 other;
     ggttatgggc ccagacagtg ctaaacgtgt aatgtagtgt gaaatcgagt gcaagtacaa        60
     aagtgaatta gtggcaaatt tgtaactaaa taaagacaat gaaaatggag ccattaaata       120
     tgagaattga acgattacgc gacaaagaca attggcattt gtggtgtttt atgattcgta       180
     cgctattgga agaagacgac gatgttcttg ccgtttgtga aggtagtttg acgtgtccga       240
     cacaggagtc tgcaacatac gagagagact cgaaaaggtt cttgaaagct gataagactg       300
     caaggaaaat aattattcat tctatcgaga gaagaccgat ggaattgatt gtgagctgca       360
     aaacagcaag agaaatgtgg ataaaattga actcagtgta tgatatgaaa tcagaagaaa       420
     atttatcggc tattcagaaa cagttttttg atttcaaatg gattgaaagt gagagtgtgg       480
     actacaatat ttcaaagttg gaagttttgt ggagcaagat gaaaaatctt ggaagtgctg       540
     tgcctgaaac aatgttaatg tcgcgaatcc tgtcatcttt gcctcaaaag tttaactatt       600
     ttcatagtgc gtgggattcg gtcgaagaca gcaaaagaac attgaacaat ttgacgactc       660
     gtttaatgac agaagaaatg cggtcaaaag aacaagaagt ggtacctgaa gagtcaacag       720
     cgttagtcgc cggcaacgga aaaaataaaa gagaacatga aaataagaag aaaattatga       780
     agtgctataa ctgcggcgtg atgggacatc tgaagaagga ctgctacagg tgttatatat       840
     gcaagaagaa aggccacaag agcaacacat gtcaccaaag gagaaatgca ggaagtcaag       900
     cggaaaataa tcaaggagaa tcgggtgaat catcgaggaa aggattgatt gcgagcaggg       960
     acggcagaga agatgacgtg tgggtgatcg actcaggagc ttctgatcac atgtcaaggc      1020
     gtcgagattg gtattctact tatgaagaat ttttggagcc cctgaggata ggcgtaggta      1080
     acggtaaata tatcacggcg cacggaaaag gtaatattga tattgaaact tatgtcaata      1140
     ataataaaag ggcgacgaca atgtttaatg ttttgtatgt tccggaaata gtttacaatt      1200
     tattttctat tatgtcagct gcaaaaaggg gtgttgattg tcttattaaa aataaaggaa      1260
     cacagtgttt gttgagacgt gataataaaa taattgcaac gggttctagg ttcggaaact      1320
     tattaaaatt agatgcgaat gttttgatgc caaaattgtg taatttaaca agaaaaatag      1380
     aatcgaaaga aagtgattct ttacaagtat ggcacgagag gttttgtcat caaaacgttc      1440
     gacatgttcg cgattatttg aaaaataaga atattgattt tctagaaaat gatttctttt      1500
     gtgaaggatg tgcttatggg aagcagcatc ggctaacatt tcacaaaaat attgaccgtg      1560
     caacaaagac acgagagata attcatactg atgtttgcgg tccgatagag gtagagtcta      1620
     ttggtaaaaa gttgtatttt gttagcttta aagatgatta ttcaagttat cgggaagttt      1680
     attttatacg tcataagtcg gaagtatttg aaaaactcca aatttttatt caggcaattc      1740
     agaatcaatt tcatgaaaac attaaagaaa ttcacagcga tgggggtaga gaatatatta      1800
     ataaagaagt taaattgttc tttaataaga agggaataaa acatattgtt aatgctcctt      1860
     atacacctga acagaatgga gttgcggaac gtgagaatag aactattatt gaagctgcac      1920
     gatcaatgtt gcattctaat tctgagttac cattatttct atgggcagaa gcagtaaaca      1980
     ctgcagttta tgtaattaac cgcacaggtc caacaaaaca tgggaataaa actccatatg      2040
     agttgtggtt caagaaagag ccagatatcg gaaatcttaa aattttcggg actgaatgtt      2100
     ttgtacatgt accaaaagaa aaaaggagaa aattagataa aaagtctatt aaaggattta      2160
     tagtaggata cgttgaaaat tgcaaaggat atcgtgtata tgttccaaat atgagagatg      2220
     taattataag tagagatgta tgttttaaac cagaaaactt tacagctcag tttaaaaaac      2280
     ctgaaatttt agttgacaat tctgaaagtg agactaatga aagtgaatac gaaaataata      2340
     aaattgaaga tgaatcaact gaacataata atagtgaaat gggtcggcga ttgcgagata      2400
     gatcacagat tcgtatgcca gatttttatg gttgccctgt tacatttatt acacaaagct      2460
     tgcctttaaa ttataatgaa gcgttaaagt ctgatgataa agagtactgg caaactgcga      2520
     tgcaagaaga aattaattct ttacatgaaa atagaacttg ggttcttgtt ccaaaacctg      2580
     aaaataaaaa ggttatcaat agtagatggg tttatacaaa gaagctcaat ccagacggct      2640
     cggaaaggta taaagcgcgt ttagttatta agggttattc acaaaaggaa gggatcgatt      2700
     ataaagagac ttttagccct gtagttagat ttgataccgt gagattcctg ttaagtgtag      2760
     ctgctcaaga aaatctattt cttggtcagt ttgatgtaaa aacagccttt ttatatggta      2820
     ctcttaagga aaatatttat atgcatcagc cagagggttt cgaagatggt acctcttctg      2880
     tttgcaaatt gttgaagagt ttgtatgggt taaaacaagc tccgaggtgc tggacagagc      2940
     attttgcaaa tgttattaaa aatttgggat ttacacaaag tattgcagat ccatgttttt      3000
     atatatactc taaaaataat gacagaattt tgttaacgat ttatgtagat gacgggttaa      3060
     ttgctgcatc caatgaattt ttaattgata atctatttga gaatttgagc aaggaattta      3120
     aaataacaag tacaaaaaat gtaacatgct tcttaggaat agaaatactg aagcagccaa      3180
     atggttctat cttcatatat caagaaaatt atataaagaa aattttagaa aaatttaata      3240
     tgataaatgc gaacattgtc tccacgccag ttgaatgtaa ttatgatgaa aatgtatctg      3300
     aacaaaataa ttgtaatgca ccttaccgcg aagcagtagg aaatttaatg tttttacaag      3360
     ttgtttcaag gccagatata agtttttctg ttaatgtagt ttcccgagag ctagaaaacc      3420
     cgaagcagca tcactggacg ttagttaaga gaatatttcg ttatttgaaa ggaacgatgg      3480
     atttgggaat tttatacagt aaaaataata atatttttga gacatatagt gatgctgatt      3540
     atgcaggtga taagaaaact cggaaatcta catctggaat tttgtgtaaa tatgcgaatg      3600
     ctgcaataac gtggcaaagt aaaaaacaac aatgtgtagc tttatcaaca acagaagccg      3660
     aatatgtaag tgcagctcta gcaagtaagg aaatgatatg gctaaagaaa ttgttttttg      3720
     attgtaacat taatttaagt aactacatct tgtttataga taatataagt gcgattaagc      3780
     taatcaaaaa tcctgaattt catcaacgaa gcaaacatat agatgttaaa tatcattttg      3840
     tacgcgattt atttgagaaa gatgagatag atgtaaggta tgtaaagagt gaagagcaga      3900
     tcgctgacat ttttactaaa gctttgccaa agcccagatt tttgtatcta agagagaaat      3960
     tgggaatgaa gaataaggga caaatttgtt atagagatgt tgagttttag ggaggg          4016
//
ID   Copia2-I_Dpse repbase;    DNA;    INV; 4185 BP.
XX
AC   Unknown_group_59;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   16-JUN-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2_Dpse;
KW   Copia2-LTR_Dpse; Copia2-I_Dpse.
XX
NM   Copia2-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1023-1023 (2009).
XX
DR   Genome; Unknown_group_59; Positions   81873   77689.
XX
CC   Positions [1927-2460] - Integrase core
CC   LTRs are 97% similar to each other. The original virus is a
CC   duplicate.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..4185
FT                 /product="Copia2-I_Dpse_1p"
FT                 /translation="MSGNMNFNIEKLDENNYSTWEVLMRSVLIQNDLWPIV
FT                 SGKIELSESATSEQRAAFELKDQKALASILLCVKSTQLNNIKNCVSSSQAW
FT                 QKLNKIHRPSGPARQVLLIKQLLTLKMSDGISAQEYLRKFQVVHEALAEVN
FT                 IKVDEKILSVVLLNGLPKSYESFVVAIETRDDLPSLSMLKIKISEEANRQE
FT                 DSISKEITSSAELHVSYDNNNFKKNFKKGKKCFKCGKEGHFKSECRAKSKQ
FT                 EGANNKGANSKSGERLGTMLCVTEYDKVEPEKYVPILSLAKPNDQMLNAWC
FT                 IDSGATAHLCCDKERFVSFTEDNQKVFLAGGKSLIAEGHGTVQVKFGDRSV
FT                 TMENVILVPDLQYNFISVTKLLKHGKKVVFEKNQAMIFENGKIVIKAHLEN
FT                 GLFMVQDNQEKCMNIVNVEADAFKWHNRFGHVHFDALKEMVNKEMVIGLKG
FT                 IYKPKQVCATCAKSKICVQPFQSSTNRSKGVLDLIHTDVCGPMQKQSMGGN
FT                 RYFATFIDDCSRYVSVSFLKTKDQVFEAFKEFKSQVECQTGRKVKVLRSDN
FT                 GREYISNVFDNYLNQNGIKRNLTVPYTPQQNGVAERANRTLVEMARSMLLH
FT                 AGLSECYWAEAIRAATYLRNRVASSCLSGVTPFEIWTGRKPVVSHLRVFGS
FT                 VAIALDKTKKSKFAQKGLEYIIVDYSDTAKAYRLVSKETRKLVESRDVIFV
FT                 EPEGGKLDASCSNDIASIEVQQNQNAEPEMDSEQFKDPENEPENQEEIRSS
FT                 NDILVIPEPIRGPGRPTIVRTGKPGRPRKQYHMLNAILAADVQVPQNYAQA
FT                 ERSTEGEIWKASMKDEYESLVKNGTWSLTKLPSGKKSIGCRWVYAVKSNPD
FT                 GSVNRLKSRLVAKGCSQRYGIDYKETFAPVVRHATIRLIIALAVEHGLHLH
FT                 QMDVVTAYLNGELEDEVFMREPEGFISEVHPNHVLRLHKSIYGLKQSGRVW
FT                 NSTLDATLRRIGFIPTVNEPCLYRKPGKNMCLIAVYVDDIILACKDLDDIS
FT                 DIKIKIAAEFDVVDIGPMQYFLGIEVKREGSTGAISISQRKYIRELLEQYN
FT                 LKDCRQTSTSLEAGYQVTCNKEDCRRVDITSFQKLIGELSYLAVMTRPDIA
FT                 HSVNKLAQRNKDPHSEHEAAAKHILRYLAKTIDWEICYTKQGKAIECFVDA
FT                 DWASDMTNRKSFTGYVCMLAGGAVSWESRKQSTVALSSTEAEYIALSSAAK
FT                 EAI"
XX
SQ   Sequence 4185 BP; 1445 A; 724 C; 1020 G; 996 T; 0 other;
     ggttatgggc ccagacacca attcacccag aaacagtata aaacagaaac agtgagaaac        60
     aataaacatt gtttggtgct tagtgaaaag cagtgctaaa aaaaaatggc atagactcat       120
     tggggttatg tgtgtacata gaaaggcaaa agaacaagtt gaacaaattc aacggagatt       180
     cgcattgtgt tttttgatta gaattttgca gcgaatcgga ccgttgccgt ggtttaaagt       240
     ccaaaataaa gcagtcccaa cggatcaaga aacacaaaag cgaacggaga ctcaagtgtg       300
     tataccaaaa agtgcgtatg ccaagccgca caaaacggcg agtgtgtata cccaaaagtg       360
     tgtataccaa ggcatagaaa atcgcgagtg tgtgtgtgta aatagcaact cggggggata       420
     cttaaaagaa aacgaaaaaa aaaaacaaaa gaaaggcacg gacaacagta ttgtcgtcgt       480
     agttgctttg tgcatgagac gatagacagt tacaaatttt gcactgtggg acaataagta       540
     taaaaaatga gtggaaatat gaatttcaat attgagaaac tggacgaaaa caattatagc       600
     acatgggaag ttttgatgag aagtgttctc atacaaaatg atttgtggcc aatcgtcagt       660
     ggtaaaattg agcttagtga aagtgcaaca agtgagcaac gtgcagcttt tgaactaaag       720
     gatcaaaagg cgttggcgtc aattttactt tgtgttaaat cgacccaact aaacaatatt       780
     aaaaattgtg tatcgtcgtc acaggcatgg caaaagctaa ataaaattca caggccaagc       840
     ggaccagcaa ggcaagtgct tttaattaaa caattgttga cgttaaaaat gtcggatggt       900
     ataagtgcac aggaatattt gcggaaattc caggtggtac acgaggcttt agcagaggtc       960
     aacataaagg ttgatgaaaa gatcttatca gttgtgttgc taaatggttt gcctaaatcg      1020
     tatgaaagtt ttgttgttgc gattgagacg cgagatgatt tgccgagctt gagcatgcta      1080
     aaaataaaaa tttctgaaga agcgaatagg caggaagata gcattagcaa ggaaattaca      1140
     agtagcgcgg aactacacgt cagttatgac aacaacaatt ttaagaaaaa ctttaagaag      1200
     ggcaaaaagt gttttaagtg cggaaaggaa ggccatttta aatcggaatg ccgtgctaaa      1260
     agcaagcagg aaggagcaaa caacaagggc gcaaacagta aaagcgggga aagattgggt      1320
     acaatgcttt gcgtaaccga atatgacaaa gtggaaccag aaaaatatgt accaatccta      1380
     agtttagcta agccgaatga ccagatgtta aatgcatggt gcatagacag tggcgcaacg      1440
     gcgcatctat gttgtgacaa ggaacgcttt gtgtcgttca cggaagataa tcaaaaagta      1500
     tttttagccg gcggtaaatc acttattgct gaagggcatg gaactgttca agtaaagttc      1560
     ggtgatagat ccgttacgat ggaaaatgtt atcttggtac cagatttgca gtacaatttt      1620
     atatcggtca caaaactatt aaaacatgga aaaaaagttg tgtttgagaa aaatcaagcg      1680
     atgatttttg aaaacggaaa aatagttata aaggcacatc tggaaaatgg attgtttatg      1740
     gttcaggaca atcaggaaaa gtgtatgaac attgtaaatg ttgaggcaga tgcattcaaa      1800
     tggcacaata ggttcggaca tgtacatttt gacgcattaa aggaaatggt taacaaggag      1860
     atggtaatag gtctcaaggg catatacaag ccaaaacaag tgtgtgcaac atgcgcaaaa      1920
     agtaaaattt gcgtgcaacc atttcaatcg agcacaaaca ggtcaaaggg cgttctagac      1980
     ttaatacata ctgatgtatg cggtccaatg caaaagcagt caatgggagg caatcgatat      2040
     ttcgccacat ttattgatga ttgttcaaga tatgtatcag taagtttcct aaaaaccaaa      2100
     gatcaggttt tcgaggcttt taaagaattt aaaagtcaag ttgagtgcca aactgggaga      2160
     aaagtcaagg ttttacgaag cgacaatggc cgagaataca tatcaaacgt ttttgacaat      2220
     tacctaaacc aaaatggaat aaagcgaaac ttaacagtgc catatacacc tcaacaaaac      2280
     ggagttgcag aaagggccaa cagaacattg gtagaaatgg caagaagtat gctgctgcat      2340
     gctgggttga gtgaatgcta ttgggcagaa gcgattcgag ctgccacgta tttgcgaaat      2400
     agagtggcaa gcagctgctt gagcggggtg acaccttttg aaatatggac aggtcgaaag      2460
     ccagtggtat cgcatttaag agtttttggc tcagtagcga tagctctaga taaaacaaag      2520
     aaatcaaagt tcgcacagaa aggcttagag tatataattg tggactactc ggatacggcc      2580
     aaagcatacc gtttggtcag taaagaaacc aggaaactcg tagagagtag ggatgtcatt      2640
     tttgtagaac ctgaaggggg caaactagat gcatcatgtt ccaatgacat agcatcaatt      2700
     gaggttcaac aaaaccagaa cgctgaaccc gaaatggata gcgagcaatt taaagatcca      2760
     gaaaatgagc cagaaaatca ggaggagatt aggtctagta atgacattct tgtaattcca      2820
     gaaccaataa gaggaccagg acgcccaacc atagtacgga cgggcaaacc aggacgacca      2880
     aggaagcagt atcatatgct caatgcgata ctggcagcag acgtacaagt tccacaaaac      2940
     tacgcacaag ctgaacggtc tactgaaggc gagatatgga aagcatcaat gaaggacgag      3000
     tacgaatctc tcgtgaagaa cggcacgtgg tcgcttacta aattgcctag cgggaaaaag      3060
     tccattggat gcagatgggt ttacgcagtt aagtccaatc cggatggaag cgtgaacagg      3120
     ctcaaatcac gtctggtggc gaaaggttgt agccaacgct acgggatcga ctacaaggaa      3180
     acatttgcac cagttgtacg ccacgcaact atcaggttga taattgcact tgcagtcgaa      3240
     catggtctcc acctacatca aatggatgtt gtcacggcgt atctcaacgg cgaattggaa      3300
     gatgaggttt ttatgagaga acctgagggc ttcatcagcg aagttcaccc aaatcacgtt      3360
     ttgaggcttc acaaaagtat atatggccta aaacaatcag gaagagtgtg gaactctacg      3420
     ttggatgcaa cgctgagacg cattggtttt ataccgactg tcaacgaacc ctgtctgtat      3480
     cgtaagccag gtaaaaatat gtgtctaata gctgtctacg tagatgacat tattttggcg      3540
     tgtaaggacc tagatgatat atctgatatc aagataaaga tcgcagcaga atttgatgtg      3600
     gttgacatcg ggcctatgca atacttttta ggtattgagg tgaaacgtga aggcagtacg      3660
     ggtgcgattt caatcagcca acggaagtat attagagagt tgctcgaaca gtacaatttg      3720
     aaagattgtc gacagacgtc cacgtctctt gaagctggtt accaggtgac atgcaacaaa      3780
     gaggactgcc gcagggtcga catcacatcg ttccaaaagc taattggaga gttatcttat      3840
     cttgctgtta tgactcgtcc ggacattgcg cattcggtga acaaattagc acaacgtaac      3900
     aaggatcctc attccgagca tgaagcggca gccaagcaca tccttcgata tttggcaaaa      3960
     actatcgact gggagatatg ctacacaaag caaggaaagg caattgagtg ttttgttgat      4020
     gcagattggg caagtgatat gacgaaccga aagtcattca ctggctatgt atgcatgttg      4080
     gcaggaggag cggtttcttg ggagtcaaga aagcaatcga cggttgccct cagttccacg      4140
     gaggcagagt acatagcctt atcatctgca gcaaaagagg cgata                      4185
//
ID   COPIA2-LTR_AG repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA2-LTR_AG is a long terminal repeat of the COPIA2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA2-I_AG; COPIA2-LTR_AG; COPIA2_AG; Copia clade; Salto7;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-207
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA2_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (31-MAR-2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA2-LTR_AG is a long terminal repeat of the COPIA2_AG LTR
CC   retrotransposon. There are ~7 copies of COPIA2-LTR_AG in
CC   the genome.
XX
SQ   Sequence 207 BP; 57 A; 56 C; 37 G; 57 T; 0 other;
     tgttgagctt ctcggattga tgcgacaagt gcctatcagg caacaccgaa tgattgccaa        60
     tcgggccaca ctttgcacac cacacacacg attgaactct gaataaagat cattcctgca       120
     ttaagcgtac aagcgaacac acgtcttttc atttggtaaa acagtccact cggtatttcc       180
     actttgcgtt tctcttccag ttcaaca                                           207
//
ID   Copia2-LTR_Dmoj repbase;    DNA;    INV; 386 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   28-OCT-2020 (Rel. 25.11, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2_Dmoj;
KW   Copia2-LTR_Dmoj; Copia2-I_Dmoj.
XX
NM   Copia2-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-386
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1024-1024 (2009).
XX
RN   [3]
RP   1-386
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: ~99% identical to the consensus.
XX
SQ   Sequence 386 BP; 122 A; 65 C; 87 G; 112 T; 0 other;
     tgttgaggat tgatctcgaa aaactcatca tcaagtgggc atttgagcta acggtaaaca        60
     cagtcgtcgg ctgatcgcgc atttgtctct agaataagaa accgaatgtt ctggattatg       120
     aaatagacgc aaacatagaa gcataaggag acatccagaa cattcgatat gcagtagaag       180
     taggtatata agcgtgctgt aagtcgagcc aaagttcatt cagtaagttc attgtgtaag       240
     atcaatgtca gtgtgtcggc tcggttagtt aagttcaaat cgtcgcggta cgtgaagaag       300
     tgtacttgtt actgaatatt gtgttaaata aactttttgc gttgcgccta catataccgt       360
     gtttcattta agaaaaacct tcaaca                                            386
//
ID   Copia2-LTR_Dpse repbase;    DNA;    INV; 494 BP.
XX
AC   Unknown_group_59;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2_Dpse;
KW   Copia2-I_Dpse; Copia2-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1025-1025 (2009).
XX
DR   Genome; Unknown_group_59; Positions   73234   72741.
XX
SQ   Sequence 494 BP; 146 A; 94 C; 95 G; 159 T; 0 other;
     tggagcacat cagcttgcta gaaaccccat gtttcatgca cgtacaaagt acatcgacgt        60
     caacatacat catattcgag aggttctcaa gagaggtgaa gtcaacattg catatctgcc       120
     aaccgatgag atgatagcag atgtcctcac aaagaactta gccaaggtta agcaccataa       180
     atttgtattc gcatttggtt taaaagatcg tttataagtg cttgacatgt tattgaatat       240
     tagttaagta tatttaaagt ttgtaaacat gcgttgtgtt gaggaggagt gttcaaagtg       300
     accgccacga taattagata ttgatctgta acaacactgc gcatgtgccc tgctgctgtt       360
     cgatgttctc atatcgatgt tctgtatatc gagtttccct tttcggtgtc tctctcttgc       420
     gtatgttact cggaagcaca cataattctt tatactgata ttctgctgtc ttacaaataa       480
     aaataacttt aaca                                                         494
//
ID   Copia2-NVi_I repbase;    DNA;    INV; 4116 BP.
XX
AC   AAZX01002725;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2-NVi;
KW   Copia2-NVi_I; Copia2-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4116
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1109-1109 (2007).
XX
DR   Genome; AAZX01002725; Positions    4506    8621.
XX
CC   Positions [1646-2059] - Integrase core
CC   'ATAAA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1676..3349
FT                 /product="Copia2-NVi_I_1p"
FT                 /translation="MVSFLKHKADVYDRFKAFEHQVNTKFNRPMKVLRSDN
FT                 GTEYCNRSMRKLLEDKGIKHETSAPYTPQQNGKSERANRTIVESARTMMLR
FT                 ANAPRFLWAEAINTAVYLLNRATSDKESNSTPFEAWTGQKPDYSHLKVFGS
FT                 PAYVHIQKMFRKKMDAKAFKATFVGYEGDSRNYRFYNPATKKVIQSREADF
FT                 LEDRVGEASEDAVDSATIWKHKGQPWEMEREEAVERYSPAPPSLIPEPPSS
FT                 PPSPRRIADHAPRPVASPPPEVEPVPAKTTKAANSNDRQLRDRSNIKKPSK
FT                 YQANIIEYNDPQTYNDELQAHAKNGTWELVPKPTGHSIIDSKWVLKYQAVK
FT                 AGKESRCKARLCARGFGQEYGKNYQETFAPVVRYDALRMLLAIANQEDYEI
FT                 VQFDVKTAFLHGLLKDEVYMAIPEGLNIRGEVDNVLCKLKRALYGLKQASR
FT                 CWNITFKNCMLDLNFKPCDSEKSIFVSEKNSELVYIILFFDDGLIMAKQSN
FT                 VLTNIISALKERFEITVCEPRTFVGMQIERDRANRTMFLHHSEYAWKILKR
FT                 FNMLDAKTVCT"
XX
SQ   Sequence 4116 BP; 1361 A; 796 C; 970 G; 989 T; 0 other;
     ggctatgggc cgaggagcgt accagagtaa tagtgcaagt gtgaaaagtg ataacattga        60
     ttgtattaaa tttaagtata ccgcaaaacg aagcgaagac aatcaacatg acaacagcga       120
     atgaatcacc gatacaccgc aacaaactcg atggcacaaa ctatcaatta tggaaattcc       180
     aaatgcgcgt aacactaatg gctaatggcg tatttgaagt agtcgacgga accaccgaga       240
     agccagcaga tttaacgaat accgatggta agaaatggat tgcagacaac gcaaaggcta       300
     tgtgcttatt ggcaggctct atgatgccgc ttcatcttga aaattgtatt actagcgata       360
     ctgcccacga gatgtggatg aaggtcaagc tcattcacga gcaaaaatcc gaagctaata       420
     aagcgagctt gctccagaag ttttatgcat gtcgaatgga ggcaaccgag tcgatggtgc       480
     aattttccac gaaagtgatg aatatggctc gaatgttaga agacttagaa gaaaaagtat       540
     cggagcttgg aatcgttgct aaaatcctgg gcagctcacc aaagaaatat aataattttg       600
     tgacagcatg ggacagtgtc gatgccaagg atcaaaccct aaataagctc caggagcgat       660
     taattaaaga agaaaaacgt cttagcgaaa ttgaagaaga aacgagcgcg tttatagtta       720
     atacgaagcc taatatttat gaaaaacaaa gattcgatga acgaacgacg agatcacacg       780
     ataacagaac ataccaagga agaaagacaa aaacaggatt aatatgttat tattgtaaga       840
     agactggtca cttcgcgaga aactgtccca agaagaagag aaactatcat aaaggtaaac       900
     aaaactccga atcaaacgcg atcgcccttg tagcgacaat taatgataga ccagcgagaa       960
     attgctagaa tattaaagct tgatagcacg gacgtttggc tgaccgacag tggcgcctca      1020
     agacatttaa cttatcgaag aaattggttg caagattttt cggtatgcag cggcgaaagc      1080
     gtgactctcg gggacaacga agagtgtaaa attgaaggca aaggaacaat ttttattgaa      1140
     aagcatgtcg atggcgaatg gatttctgga aaaatcgtag acgtgctcta tgttccacgt      1200
     ttgcgaaaga atcttgtttc ggtcggagta tgtacatcga aaggataccg agttagcttc      1260
     acaaaaaaag tggagttttt ctttgaaggt atcaaggtcg cacaaggtat taagcagggg      1320
     aatgaaatat atcggatgct gtttcgagtg gtcgagcgac ctgaagcaaa tgtatctaca      1380
     gtcagcctgc aacggttaca cgagcgctgt agccacgtca atgaaaaaac gctgttaagt      1440
     atggtaaaaa cgggcgctgt aaagggtgtt gatgtcaaag cagaatcgat tttctcgtgc      1500
     gactcatgca agattgaaaa gtcgcaccta cacccatata agaaggacca ggagcatcgt      1560
     aaatgactgc cgggtgaact gtttcattcc gacgtgtgcg gtccgatgag cgtaacatca      1620
     ctaggaggtg cgaggtattt tctaactttt tattgaccac gcttctaact acagaatggt      1680
     atctttcctc aaacacaagg cggatgtcta tgatcgattt aaagcatttg aacatcaagt      1740
     caacacgaag ttcaatcgtc caatgaaagt tctgagaagc gacaatggca ccgagtattg      1800
     taacagatcg atgagaaaat tgttggaaga taaaggtatt aagcacgaaa cgtctgcgcc      1860
     ctacacgccg cagcaaaatg ggaagtctga acgcgccaat aggaccattg tagaaagcgc      1920
     acggacaatg atgctcagag cgaacgcacc gagatttcta tgggctgaag caatcaatac      1980
     agctgtgtac ctgttaaata gagcaacctc agacaaggaa tcaaactcta cgcctttcga      2040
     ggcttggacc ggacaaaaac ccgactacag ccatctgaaa gtattcggat ctccagccta      2100
     cgtacacata caaaaaatgt ttcgtaagaa aatggatgca aaagcattca aggcaacctt      2160
     tgttggctac gaaggagatt ccaggaatta taggttctat aatccggcaa ccaagaaagt      2220
     aattcagtca agagaggcgg atttccttga agatcgtgtc ggagaagcat cagaagatgc      2280
     ggtcgattca gcaactattt ggaagcataa aggtcaacct tgggaaatgg aacgggagga      2340
     agctgttgag agatactctc cagcaccacc atctctaatt ccagaaccgc cgtcgtcacc      2400
     accgtctcct cgacgaatcg cggaccatgc gccaaggcca gtagcgtcgc caccaccgga      2460
     ggtcgagcca gtacccgcta aaacgactaa agcagccaac tcaaacgatc gccagctgag      2520
     ggaccggagc aacataaaaa aaccaagcaa gtatcaagct aatataatcg agtataatga      2580
     tccacagacc tataatgacg aactacaggc gcatgctaaa aacggcacat gggagctggt      2640
     accaaagcct accggtcaca gcataatcga ttcgaaatgg gtcctgaagt atcaggcagt      2700
     gaaggccggt aaagagagtc gctgtaaagc gcgcctctgt gctcgaggtt ttggacagga      2760
     gtatggcaaa aattaccagg aaacttttgc cccggtagtt agatatgacg ccttgcgaat      2820
     gctgcttgct attgctaatc aagaagatta cgagattgtc caattcgacg taaaaacggc      2880
     ctttttgcac ggtcttttaa aagacgaagt atatatggcc attccggagg gactaaatat      2940
     aagaggcgaa gttgacaatg tgttatgtaa gttaaaaagg gccttgtatg gcctaaaaca      3000
     agcttccaga tgttggaata ttacctttaa aaattgtatg ttagacctaa actttaaacc      3060
     gtgcgactca gaaaaatcta tatttgtaag cgagaaaaat agcgagcttg tatatattat      3120
     attatttttc gacgatggtc tcattatggc caaacaaagt aatgtattga ctaatataat      3180
     tagtgcgcta aaggaaagat ttgaaattac tgtgtgcgaa ccgcgtacat ttgttggtat      3240
     gcagattgaa cgcgatcggg ctaatcgaac catgtttctt catcattcag agtatgcgtg      3300
     gaaaattttg aagcgcttca acatgctgga cgccaaaaca gtatgtacct gagtatgaga      3360
     agggaataga tctgaactcg atgaaacaac atgattctga gacagtgaaa ttgccttacc      3420
     gagaactaat tggctcttta atgtttctat gtacggtcac gcgttttgac atgatgtacg      3480
     gagtaaattt atttagtcgt ttcttagata attatacgat tgcacattgg acagcagcga      3540
     aacgcatttt gcgatatctt agaggtacaa tcaatcacgg tatactgttc aaaaacagcg      3600
     ggagtaatca cgaattaatt gggttttgtg attcggatta cgcgggcgac acagaaacgc      3660
     gacgatctac gtccggatac atttttcgtt actgtggcgg tccgatttcg tggagtgttc      3720
     aaagacaaaa acgtgtaaca ctcagcacca ccgaagccca atacgtctcg gctagcaatg      3780
     ccacgcgaga ggtcgtatgg ttgagagagc ttttgaggga tgttggattt ccatgcacaa      3840
     agcctaccat tttaaacatt gataaccaag gtgcaattca attgataaaa aaccctgttt      3900
     ttcataggcg ttctaagcat atagaagtcc agcatcactt cgttagagag aagtatgagt      3960
     gtggagcgat cgatggaagt atgtaccaag cgaaaatcag ctcgccgatg tcttcacaaa      4020
     agcattagcg cgggagcttt ttgtaaaatt atgtaagaat ataggtttaa gctttgttga      4080
     aaatcttaaa gcgattgatg tctcggaaag cgggag                                4116
//
ID   Copia2-NVi_LTR repbase;    DNA;    INV; 342 BP.
XX
AC   AAZX01002725;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia2-NVi;
KW   Copia2-NVi_I; Copia2-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-342
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1128-1128 (2007).
XX
DR   Genome; AAZX01002725; Positions    4164    4505.
XX
SQ   Sequence 342 BP; 98 A; 63 C; 74 G; 107 T; 0 other;
     tgttaaggaa aattcctcga cattgtatct agaatattcg acgactgacg caagcgctta        60
     agcgagtatg tataatgtat atatgaaggt gtgtatagat atgtaaacat gaatgttttt       120
     ctggacggta ggctcggcgc gagcatcaaa cgacacgata ggcagttcta gtctggccct       180
     cgatatatat ggacgggtga tattttcgga agccctcgag tatgttagac taagaggtgg       240
     agagtgcttt gttgagatca tctctcttgt aactacaata aactctatta taactacact       300
     gcgcctattt tacattttac tctgctccta taatccttaa ca                          342
//
ID   Copia20-NVi_I repbase;    DNA;    INV; 3939 BP.
XX
AC   NW_001818714;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia20-NV;
KW   Copia20-NVi_LTR; internal portion; Copia20-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3939
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1206-1206 (2007).
XX
DR   Genome; NW_001818714; Positions    7383   11321.
XX
CC   'CTTTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1190..2956
FT                 /product="Copia20-NVi_I_1p"
FT                 /translation="MFNREYLFINSEGEGTEYITLNHPAPYGRRLGMVVNS
FT                 IEAMKAAMNNYSEVLEKQANAIISLQKSMVESNKVTMEMMNLIKELQNQKV
FT                 TNPLANSTIRDINQSTNNTSLRNTNTSNTINIKRNYMLTRKMPLNEWLDYL
FT                 KSDLKTNDLLFILEDNESLISLYDKSELEKKTSTVRDIIINHVDRYYHKRI
FT                 LEIDDPKLILNKIRDFRRAETNVTDSAMRSKLYSLKMSKKESVNDFCDRFE
FT                 TIVNEFEFCNTDAPLLEAEKRSAFFQAACNAYAELGQANITRLQSTGTEMS
FT                 LDNMITYLLQTEAQNKTSDGKPSDAKANLVTQIFSQTTKCFRCNKVGHKAA
FT                 DCPLAEYSLWYCFYCQAVANHKGDTCPNKDNPKDGYAKSLVYSNNTQNTHT
FT                 HNNFRGIRGRGRGGYNNVRGKFRGNNKRGNFKKQVTIQTPGRKQKQAEINK
FT                 ARLAGKYNKSNIRDDSSKLVFIADSGATEHIINKSLFLRNFKKSSGKIIRS
FT                 ANKNKSANIIIDGKGDLYLKPTSDENNKILLTNVIAAQDISDNLISLRRFA
FT                 DAGLSIYLDDKILKIFDKKSGSEYLTGIYEKPNWIISFEVEN"
XX
SQ   Sequence 3939 BP; 1510 A; 669 C; 745 G; 1015 T; 0 other;
     ggttgtgggt cagcatgcat gacggtattt ttttcgattc agaggaactg ttcaactatt        60
     caccacgatt tcagaggtac cgtttttttt cttttccaaa caaagggaaa tagaaattta       120
     gaagtgaaaa gctaatcaga tgaacaaata attaaatctc tcatttgctt agtctcggga       180
     gtgctttttg tttaaacgtg ccgtattcga gttgtgaaaa ataggataga cagtgcgatg       240
     tctaattagc tcagaataga gaaaaacatt agaaagagag attttgtagt cagagaaact       300
     aagttttgtt tccattatcc ttcagagaga gatatagaga gagaacaaag cacaggagtg       360
     ctatagcgcg cgtagaaacc gcgcgaacac aaaccggcgc gagctcgcgc gggccaattc       420
     tcggaatcgg agacaagcgt gcagcgacgc gcggcgtgga gagtcatgcg cccggcttgt       480
     ttacgtttcg acctctcggt ttttctctca gaaacatgag gcaaacgttt gtttcctgaa       540
     tatttttttc ggatgtttat ggaataatac cgtatgttta aatatttgca accagaacat       600
     ttttcctctc gtgatcgttg ctttctatca gagtattttt tttctcttgg acttaaaaat       660
     taaaaatcaa tcagacgaga attttaaagt aaaaagaaac acgaattaaa tagaatcctc       720
     gataatacgg cattgcagta aagtcgagtc tttctataaa gaataaaact acaaatttag       780
     caaactgctg tttgcagttt caccgcaaca gcatgtgcgt gtgcgatcgc ccctcacaca       840
     aaattgagaa aattgcgttc gtttgctcag gttgggaggg agcacgtgta tgttgttcgg       900
     cggaacaaaa catttttctc aagctagtct aacttgcaat gcggtcagac taagcaaaaa       960
     ttaaaactaa aagaaacatt caacattaca gggtgaaata aaactcggaa atatcagaag      1020
     tgtcaggatg tccgacaatt tagacgagga aattctacca aacatataag gtaaaagtgt      1080
     ttctattaga atataaacaa ataaatcaga gacagacgat aggcctataa aaacacttat      1140
     ttttatataa attaataagt aaattcagaa gtaagaaatc ggaagttgaa tgtttaatcg      1200
     agaatatttg tttataaatt cagagggaga gggaacagag tatattactc taaatcaccc      1260
     tgctccgtat ggcagaagat tggggatggt ggtaaacagc atcgaagcca tgaaggcagc      1320
     catgaacaac tattcagagg tcctagaaaa gcaagccaac gccatcataa gtcttcagaa      1380
     gtccatggta gaaagcaaca aagtaactat ggaaatgatg aatcttatca aagaattaca      1440
     aaatcagaag gtaacaaatc ccctcgcaaa ctctaccatc agagatataa atcagagtac      1500
     taacaacact tccttaagaa acacaaacac atcaaacaca attaacatca aacgtaacta      1560
     catgcttaca cgaaaaatgc ctctgaacga gtggttggat tatttaaaat cagatctaaa      1620
     aacaaatgac ttactattta ttttggaaga taatgaaagc ttaatcagtc tatacgacaa      1680
     atcagaatta gaaaagaaaa cctccacagt cagagacatt atcataaatc atgtagatag      1740
     atactatcac aagagaatat tagagattga cgatccaaaa ctgatattga ataaaatcag      1800
     agatttcaga agggcagaaa caaacgtaac ggattctgcc atgagaagta aattatatag      1860
     tttgaaaatg tcaaagaaag aatccgttaa tgatttttgt gatcgtttcg aaactattgt      1920
     taatgaattt gaattttgca atactgatgc ccctctatta gaagcagaga aaagatctgc      1980
     tttttttcaa gcagcttgta acgcatatgc tgaacttggt caagctaaca taacgagact      2040
     tcagtcgact ggaactgaaa tgagcttgga taatatgata acgtatttgt tgcagacaga      2100
     agcacaaaat aagacttcag acggaaaacc ttcagatgct aaagcaaact tagtgactca      2160
     aatcttcagt cagacgacta aatgcttcag atgcaacaaa gtaggacaca aggcagcgga      2220
     ttgcccctta gcagaatata gtctatggta ctgcttttac tgccaggccg tagcaaacca      2280
     caagggagac acttgtccaa acaaggataa tcctaaagac gggtatgcaa aatcattagt      2340
     ttactctaac aatacacaaa acacacatac acacaataac ttcagaggta ttaggggtag      2400
     aggtagaggc ggatataaca atgttagagg taaattcaga ggtaataaca aacggggaaa      2460
     tttcaaaaag caagttacga tccaaactcc tggccgaaaa cagaaacaag cagaaatcaa      2520
     caaagcaagg ctagcaggta aatacaataa atctaatatc agagatgatt catcaaaatt      2580
     agtttttatt gcggattccg gggcgacgga acacattata aataaaagcc tatttctaag      2640
     aaatttcaaa aagagttcag gaaagataat cagaagtgcg aacaagaata aatcagccaa      2700
     tattattata gatggaaaag gcgatctata cttaaaacct acatcagacg aaaataacaa      2760
     aattttatta acaaacgtaa tagctgcaca agatatttca gacaatttaa tatctcttag      2820
     acgctttgca gacgcaggtt tgagcatata tttagatgac aaaatactta aaattttcga      2880
     taaaaagtca ggatcagagt acctgacagg aatttacgaa aaaccaaact ggattatttc      2940
     atttgaagta gaaaattaga gagtatcaga cgatcacaac attaaataca atacatactc      3000
     ctgtatggca aatatagttt ccgttgatga atttttacaa aaaatcaatg aagaaaatca      3060
     aataagaaca caagctccct atagagaagc aataggtagt ttactctatc tagctggagc      3120
     aaccagacct gacatctcat tttcagtaaa ttatctgtca cggagacaac tgaaccccac      3180
     tgaaaatgac tgaaaaaatg taaaatgtgt tttcagatat ctcagagata cctcagatgt      3240
     tggactgacg ttcaaagcag aaaaggaaga attagaagct atgtcagacg ccagcttcag      3300
     agattggtac gattcatctt ccactggagg atatgtaata ttactatctg gtgatccaat      3360
     tatgtggcga agttacaagc aaacacatat atcattgtca acttgccagt cagagtattt      3420
     agcgatgagt aacagttgcc aaggcttaat ttcactagac aaagcaatca gaagcatcat      3480
     tgggaaaaca atgtacccta ttaccatttg gtgcgacaac aattgagcag gagattgcac      3540
     ccagatggaa ggaaatcaca aattgaaaaa ctttgatgac gatcttgaaa caattcagaa      3600
     gaatttagag gaaagagaaa aatcaggcag caaagcttac atggcagaca cacatggaga      3660
     ttatattaaa aaatgtgtat cagaaggaaa attcagagta aaatagattt ctacctcaga      3720
     aaatatagca gacattatga caaaacctct atctatagaa aaacataaat acttcagaga      3780
     caaaattctc aatttaaaat aagcacagta ttcataatat aattttgaat cagatgtaaa      3840
     agagtttctt ttctttcaga tatgtcaaac caagacgaca atgattcaga gtgaataaat      3900
     aaaaaaaaaa aaaaagaaga atcactcgca ggaagggag                             3939
//
ID   Copia20-NVi_LTR repbase;    DNA;    INV; 228 BP.
XX
AC   NW_001818714;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia20-NV;
KW   Copia20-NVi_I; Copia20-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-228
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1205-1205 (2007).
XX
DR   Genome; NW_001818714; Positions    7155    7382.
XX
SQ   Sequence 228 BP; 52 A; 73 C; 39 G; 64 T; 0 other;
     tgtcagaagt ataacgctgc tcgcgactag ttcgcaagac gtgcgcctca tgctcggacg        60
     acatggcgct tctttctgct tccttctcat tcgagtttcg tccgaccccg aggccacatc       120
     tccgctacat acgacactct gatttttgtg tgctcaataa aagtttcttc tcaaacacag       180
     gactaatccc ctttgattca tcccgtcaat ccaccaacta ctccaaca                    228
//
ID   Copia21-NVi_I repbase;    DNA;    INV; 2798 BP.
XX
AC   DS265683;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   03-JAN-2008 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia21-NV;
KW   Copia21-NVi_LTR; internal portion; Copia21-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2798
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1211-1211 (2007).
XX
DR   Genome; DS265683; Positions  397815  400612.
XX
CC   Positions [36-545] - Integrase core
CC   'AATAT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..1238,1242..2702)
FT                 /product="Copia21-NVi_I_1p"
FT                 /translation="MENLPFKNNRSGSDRPLHTIHVDTMGKISPPSFPGEN
FT                 NFIIVFIDDFTRYARAYSVKHKNESGKCLENFLKHMRNLIGKNEKVCYIRG
FT                 DNGTEFTGGEFAKIMEREGISNNFVLPYTPELNGTAERFNKTIQMKIRALM
FT                 IESGLPTTMWVLAVEAAVHTYNRTPHKGIDFKTPLQMINPNRKSHIEELKR
FT                 FGSLAYIKVSIPERKFSERAIKSILVGYIPTGYLLWQPQTQRLLNSRHVRF
FT                 NEKVVYKDISGLSKQAEIQIGDCKEHKTTNDSEKQTVHPSENTETANIDKP
FT                 KRGRTMKIKATEVKQKTRENPKRKAKEQPLRDPNFVYCIHEENADELKKKS
FT                 EDEICYVRLAELNEDPTSYREAVNSEQGEKWKEAIREELKAMNDNYVWEIV
FT                 DKPENISEKRRMNIIDSRIFKRKCNNGEEKFKARLVIRGFKNKNQYELSET
FT                 YTPVSRLSVIRSALVIVNKHNLDVHQLDVKTAFLNGILEDEVFMEIPEGLD
FT                 LNREKKMCKLRKTLYGLKISPKRWNLRFSEEANKLGLERDINGPCIFTWRK
FT                 EGKMVLLVLYVDDILLAGNNSEKIHEVKTKLCEVFEMKDLGEPKLFLGMKI
FT                 QRNKEKKIMILSNPEYTKKILERFNMNGSKPQSTPMVTRQVKNRESEQHEK
FT                 LRDQETPCKARYREAIGSLLYLAGTTRPDIAYAVIFLARKQTALSESDWKD
FT                 VKRIFRYLKGTTELGLTNRESGEKLEAFTDASFRDCEESKSTGGYVIQLYR
FT                 NTIAWRSYKQSYTSLSTCQAEYLAMSEACQELISLDKAIRDITGKTNYPVT
FT                 VWCDNASAGKCTEMDGVHKLKSFDDDVENIQRKLKERESTGTKSHIAETHG
FT                 DFIKSCVMENKVMVKWIGTKENQADIMTKPLPASAHIELRDKILRI"
XX
SQ   Sequence 2798 BP; 1084 A; 486 C; 612 G; 616 T; 0 other;
     agatggagaa tctcccgttc aaaaacaaca gaagtgggtc agataggcca cttcacacaa        60
     tacacgtaga cacaatggga aagatatctc caccttcgtt tccaggcgaa aacaatttta       120
     ttattgtctt catagatgat ttcacaagat atgcgagagc atacagtgtg aagcacaaaa       180
     atgaatctgg taaatgtcta gagaatttcc taaaacatat gaggaatctg ataggcaaaa       240
     acgaaaaggt gtgctacatc agaggagata atggaacaga gttcacagga ggtgaatttg       300
     caaaaattat ggagagagaa ggaattagca acaacttcgt tctaccatat actccagaat       360
     taaatggtac tgctgagaga ttcaataaaa ccattcagat gaaaatccga gctttaatga       420
     ttgaatctgg attaccgact accatgtggg tactagcagt agaggctgca gtacacacat       480
     acaatcggac accacacaag ggaattgatt tcaaaacccc attacagatg attaatccga       540
     accggaagag tcacattgag gagttaaaaa gatttggaag cctagcatac atcaaagtat       600
     ctattcccga gagaaagttt tctgagagag ccattaaaag tattctagtg ggttatattc       660
     caaccggata cttattatgg caaccacaaa cgcaaaggct gctaaactct aggcatgtga       720
     ggttcaatga gaaggtggtg tacaaagata tttctggatt gtcgaaacaa gcagaaattc       780
     aaataggaga ttgcaaagaa cacaaaacaa caaatgattc tgagaagcaa acagtgcatc       840
     catcagaaaa tactgagact gcaaacattg ataaacccaa acgaggtaga acaatgaaaa       900
     taaaagctac agaggtaaag caaaagactc gagaaaaccc aaagagaaaa gctaaagaac       960
     agccattgag agatccgaat ttcgtctact gcatacatga agagaatgca gacgagctca      1020
     aaaagaaatc ggaggatgaa atctgttatg tacgtttagc tgagttgaac gaggacccaa      1080
     ctagctacag agaagcagtg aattcagagc aaggagaaaa atggaaagaa gccatcagag      1140
     aagaactgaa agcaatgaat gacaactacg tttgggaaat agtggacaag ccagaaaaca      1200
     tctctgaaaa gagaagaatg aacataatag actccagata gatttttaag agaaaatgca      1260
     acaacggaga agagaaattc aaagcccgac tggtaatcag aggatttaaa aacaaaaatc      1320
     agtatgaact aagtgaaacc tatactccag tctccagact gtcagtcatc aggtcagctc      1380
     tagtgatcgt caataaacat aatctagacg tacatcaact tgatgtaaaa accgccttct      1440
     tgaatggaat actagaggac gaggtgttca tggaaattcc agaaggtctc gatctcaaca      1500
     gagaaaagaa aatgtgtaaa cttagaaaga ctctctatgg actaaaaatt agtcctaaga      1560
     ggtggaatct aagattttca gaagaagcca acaaactagg gttggaaaga gatatcaacg      1620
     gcccttgtat atttacctgg agaaaggaag gtaaaatggt gttattagta ctgtatgtag      1680
     acgatattct actagcagga aacaattctg agaaaattca tgaagtgaaa acaaaactat      1740
     gtgaagtttt tgaaatgaag gacctaggtg aacccaaatt gttcctagga atgaaaatac      1800
     agagaaacaa agaaaagaaa attatgatac tgagtaatcc tgagtacact aagaaaatcc      1860
     ttgagagatt taatatgaac ggtagcaaac cacagagcac tccaatggtc acgagacaag      1920
     tgaaaaatag agaatcggag caacacgaga aattgcgcga ccaagagaca ccgtgcaaag      1980
     cccggtatag agaagctata ggcagtttac tgtacttggc tggaacgacc agaccagaca      2040
     tagcttacgc tgtcatcttt ctagcgagaa agcaaaccgc actttctgag agtgattgga      2100
     aagatgtaaa gagaattttt cgctatctaa agggtactac ggagcttgga cttactaaca      2160
     gagaatccgg agaaaaactc gaagctttta ctgacgcaag cttccgagat tgtgaagagt      2220
     caaaatcaac tggaggatac gtaatacaac tctaccgaaa cacaatagct tggagaagct      2280
     acaagcagag ttacacgtcc ttgtctactt gtcaagccga atatcttgct atgagtgaag      2340
     cctgccaaga actgatttca ctggacaaag ccataagaga tataactggc aagacaaact      2400
     atcctgtgac tgtttggtgc gacaatgcat cagcaggaaa atgtaccgag atggacggag      2460
     tacataaact aaagagcttt gacgatgatg tagagaacat tcaaagaaaa ttaaaagaaa      2520
     gagaaagcac aggcactaaa agccacattg cagagactca tggagatttt atcaaaagct      2580
     gcgtgatgga gaacaaggtg atggtaaaat ggattggtac gaaagagaat caagccgaca      2640
     ttatgactaa acctctacct gcttctgcgc acatagaatt aagagataaa attctgagaa      2700
     tttaagagaa aagacttaag tacaaaatca attccttttt caattgtctg ttcacaggat      2760
     cccatgatta aacgtagtgg aggcacgtcg ggagggag                              2798
//
ID   Copia21-NVi_LTR repbase;    DNA;    INV; 180 BP.
XX
AC   DS265683;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   03-JAN-2008 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: long terminal repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia21-NV;
KW   Copia21-NVi_I; Copia21-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-180
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1212-1212 (2007).
XX
DR   Genome; DS265683; Positions  397635  397814.
XX
SQ   Sequence 180 BP; 37 A; 52 C; 44 G; 47 T; 0 other;
     tgttggcaat cgccgagcct cccagggacc ttagcgccat ctgcacacaa aagtttacaa        60
     cggagagcgt cgtgaggcgc gctctcactt gctcgctatc acttgagtcg tgcgcaagtc       120
     cgcccgagtg ctgaagagta tttttctatt actgagttcc ttcttagcct agcttagcca       180
//
ID   COPIA2I_DM  repbase;    DNA;    INV; 4162 BP.
XX
AC   .
XX
DT   20-JUL-2000 (Rel. 5.06, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   COPIA2I_DM is an internal portion of the COPIA2_DM retrovirus - a
DE   consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   COPIA superfamily; COPIA2I_DM; COPIA2LTR_DM;
KW   gag-reverse transcriptase.
XX
NM   COPIA2I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4162
RA   Kapitonov V.V. and Jurka J.;
RT   "COPIA2I_DM.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
DR   [1] (Consensus)
XX
CC   LTR of COPIA2_DM retrotransposon is listed in Repbase Update as
CC   COPIA2LTR_DM. COPIA2_DM has been multiplied recently since
CC   its proviral copies are ~98% identical to the consensus sequence
CC   and are flanked by 99% identical LTRs. There are about 50 copies
CC   of COPIA2_DM in the genome; 5-bp target site duplications.
CC   COPIA2_DM is most close to the DM1731 retrotransposon.
CC   It encodes 1334-a polyprotein. A ~280aa N-terminal portion is
CC   a gag-like sequence. There is one stop codon disrupting the
CC   polyprotein. It's unlikely that the stop codon was present
CC   in an active retrovirus. There are only two proviral copies of
CC   this
CC   particular region available in GenBank, they both have the
CC   stop codon.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(119..2527,2531..4084)
FT                 /product="COPIA2I_DM_1p"
FT                 /translation="MSSSINQIEKLDDENYSAWAVQMKSVLIHAELWGVVC
FT                 GRVVKNESDSAELKALFDAKDEKALASIMLCIKTSQINHIKNCETAVEAWQ
FT                 RLSEIHTPSGPARRICSLKQLLHMRMSETEVVSSHVNNFCAVVEKLKEIQL
FT                 VIQEEVLSILLLSSLPESFESFVVAIETRDELPTLKMLKIKLQEEGQRRMA
FT                 NEEHSAKSEQSAFGIRSAKQKAKSDIKKSVQVNNQQLINGKRTVNCWNCGR
FT                 SGHKAVNCMYRQRKGEHRESENLNTEKSFSVLCSTVQLGELPKNMWCLDSG
FT                 ATAHLCGERSMFKSFREHKERILLAGNKYIMADGRGTVKIAWRNSSFELID
FT                 VLFVKNLQCNFMSVSKAIENGFRVSFENRRGILKNDKNKVVLIAELQSDLF
FT                 MFQNERKVESACFVAQTNLMRKWHQRFGHLNFASLNKMIKQEMVLGLKKKY
FT                 LSGAKENDCLSCAKSKICVKSFPKASGNRTNEVLELVHSDICGPMQTTSVG
FT                 GARYFVTFVDDKSRYMFVYFIKTRDEILAKFKEFKAFAENQSGKKLKAIRS
FT                 DNGREYLSKAFQSILTENGIKRQLTVPHTPQQNGVAERANRTLVEMARTMM
FT                 IHAGVGDSLWAEAINTAAYLRNRAETSALSDVTPFESWTGRKPYVSHLKIF
FT                 GSKAIVLNKSTKRKFSAKGEENILVGYSDASKGYRLFNPIRKNICVARDVI
FT                 VFENDQDDGMTAGQAVPSPDVQLVEMQHLPVCVAEGKKQDDVFQVSDKHVD
FT                 DVASVEQHRFRGRSRHPLKTMKPPKSEDLDGQRRFILVNLEDYENNTTWST
FT                 AVRMRFQFQQGVKEALTIRNFEEWRTSMQKELESLRANKTWSLVDLPAGEK
FT                 AIGSKWVFAVKRNKMGKVERFKSRLVAKGCAQRYGVNFTDTFSPVARYSSI
FT                 KLVIALAVENGLYMHQMDVSSAYLNGDLHETVYMRQPEGFIDERYPKKVLK
FT                 LHKSIYGLKQSGREWNKLLNEVLQKIGFSSCPSEPCVYTRNSGKSKNLVVV
FT                 YVDDLIIASSSKEELCDIKASISKEFDVVDGGELRHFLGIEIERDGETGGI
FT                 RIGHKQYIESLLNDYSMQDCKPNLIPLEAGFEVKCDKADCQKVNQVSYQSL
FT                 IGSLMYLAITTRPDIMHSVIKLSQRNSDPHKEHEAGAKRVLRYLRGTADLQ
FT                 LHYERTGVPIHCYVDADWAGDTTDRKSFTGWACIAAGAAFTWDSKKQSVVS
FT                 LSSTESEYVALSMAAKEVAYVRKLVNEMGFGETQATKVYSDNQSSQCLVKN
FT                 DTFHARSKHIDIKYHYIRELYKNNIIEVNYVPTENMMADVLTKNLNRFKHE
FT                 KCIQGMGLN"
XX
SQ   Sequence 4162 BP; 1364 A; 739 C; 1029 G; 1030 T; 0 other;
     ggttatgggc ccagcccacg cggacataaa agtgaatagt tctaaacgaa ttagaatatt        60
     cggcatcttt aaatattgtg attcagggat ttaatacgaa aaacttatcg aagtgaaaat       120
     gagttcatca ataaaccaaa tagaaaaact tgatgatgaa aactacagtg cgtgggctgt       180
     acaaatgaag agtgtcttaa ttcatgcgga attatggggg gtggtgtgtg gacgtgtggt       240
     taaaaacgaa agtgatagtg ctgagctaaa ggctttgttc gacgcgaagg acgaaaaagc       300
     attagcaagt ataatgctat gcattaagac atcccaaatt aaccatataa aaaactgtga       360
     gactgctgta gaggcatggc aaagacttag tgaaatccac actccctcag gaccggcacg       420
     acgtatatgt tcgctaaagc agttgttgca catgagaatg tctgaaacag aagttgtttc       480
     gagtcatgtg aacaattttt gtgcggttgt tgaaaaacta aaagaaattc aattggtgat       540
     ccaagaagaa gtcctgagta ttctcctgtt gtccagtttg ccggaatcgt ttgaaagttt       600
     cgtagttgca atagaaacgc gcgatgagtt gcccacattg aaaatgttaa aaataaaatt       660
     acaagaggaa gggcaaaggc gtatggcaaa tgaagaacat tctgcaaaaa gcgaacaaag       720
     tgcatttgga attcggtctg cgaaacaaaa agcgaaaagt gacattaaga agagtgtgca       780
     agtaaataat cagcaactga ttaacgggaa aagaacagtt aattgttgga actgtggtcg       840
     cagcggccac aaagctgtaa actgtatgta taggcaaagg aaaggagaac atagagagag       900
     cgaaaactta aataccgaga aatcattctc tgtgctctgt tcaactgtac agcttggcga       960
     attgccaaaa aatatgtggt gccttgattc aggagcaacg gctcatttgt gcggtgagag      1020
     atcgatgttt aaaagcttca gagagcataa agagcgcatt cttttggctg gcaataagta      1080
     tattatggct gacggtcgtg gtacagtgaa aatagcctgg cgcaactcat catttgaatt      1140
     gatcgacgta ctctttgtaa agaatttaca atgcaacttt atgtcggtgt cgaaggcaat      1200
     tgaaaacgga tttcgtgtgt cgttcgaaaa caggcgcgga attttaaaaa atgataagaa      1260
     taaagttgtt ttgattgctg aactgcaaag tgatttgttt atgttccaaa atgaaagaaa      1320
     agttgaaagt gcatgtttcg ttgcacagac aaatttaatg agaaagtggc accagagatt      1380
     cggtcatttg aactttgcaa gcttgaacaa aatgatcaaa caagaaatgg tactcggact      1440
     aaagaaaaaa tatttaagtg gcgcaaaaga aaatgactgt ttgagctgcg caaaaagcaa      1500
     gatatgtgtg aagagtttcc caaaagcctc tggaaatcgc acaaatgaag tactggagct      1560
     agtgcatagt gacatctgtg gtccaatgca aacgacgtct gttggaggtg cacgctattt      1620
     tgtcaccttc gtagatgaca aatcgagata catgtttgtg tatttcataa agacgagaga      1680
     tgaaatactg gccaaattca aggagtttaa agcatttgcc gaaaaccaaa gcggcaagaa      1740
     gttgaaagca ataaggagcg acaacgggcg tgagtattta agtaaagcgt ttcaatctat      1800
     cttgacagaa aacggcataa agagacaatt gacggtaccg cacaccccac aacaaaacgg      1860
     tgtagcggag cgcgctaacc gaaccctggt cgagatggca aggactatga tgattcacgc      1920
     aggcgtcggc gactcactat gggctgaagc tatcaatact gctgcttatc tacgcaatcg      1980
     cgctgagacg tcagcattat ctgatgtaac accgttcgag tcttggactg gaagaaagcc      2040
     atatgtgtcc cacctgaaga tatttggttc gaaggctatc gtgcttaaca aatccacaaa      2100
     aaggaagttt tctgcgaagg gcgaagaaaa tattttggtt ggatactctg atgcttctaa      2160
     gggatatcgc ctgttcaatc ctatcaggaa gaatatctgt gttgctcgtg acgtaattgt      2220
     atttgagaac gaccaggatg atggtatgac ggcagggcaa gcagtacctt ctcccgatgt      2280
     tcaacttgtg gagatgcagc accttccagt ctgtgttgct gagggtaaga aacaagatga      2340
     tgttttccag gtgtcagata aacacgttga cgacgttgcg tctgtcgagc aacaccgatt      2400
     cagagggaga agtcgtcatc cactgaagac aatgaagcca ccgaagtcag aggacctgga      2460
     cggccaaaga agatttatac tggtaaacct ggaagactac gaaaacaata caacatggtc      2520
     aacggcatga gtacggatga ggttccaatt ccaacaaggc gtcaaggagg cgttaaccat      2580
     aagaaacttt gaagaatgga gaacctcaat gcagaaggag ttggagagcc tacgtgcaaa      2640
     caaaacctgg tcattggtgg atttgccggc aggtgagaag gccattgggt caaaatgggt      2700
     ctttgcagtg aagcgtaaca agatgggcaa agtcgagagg tttaagtctc gacttgtcgc      2760
     aaaagggtgc gctcagcgat acggcgttaa cttcacggat acgttctcac cagtggcacg      2820
     ctactcatca atcaaattag taattgcttt ggcggtggaa aacggtctct acatgcacca      2880
     aatggacgtc tcgtctgcat acttgaatgg tgatcttcac gaaacggtat atatgaggca      2940
     gccagaggga ttcatcgatg aacgatatcc aaagaaggtg ctgaagttac acaaatctat      3000
     atatggactg aagcagagcg gccgagaatg gaataaacta ctgaacgaag tactgcaaaa      3060
     gattgggttt tcttcatgcc ctagcgagcc atgtgtttac acccgtaatt ctggcaaaag      3120
     taagaacctt gttgtagtgt acgtagacga ccttatcata gccagttcaa gcaaggagga      3180
     actgtgcgat attaaagcat caatttcaaa agaattcgat gtcgtagacg ggggcgagct      3240
     aagacatttc ctgggtatcg aaattgaacg tgacggagaa actggtggaa tcaggattgg      3300
     ccacaagcag tatattgaga gccttctcaa tgattattcg atgcaggatt gtaagccgaa      3360
     tctcatccca ctggaagcag gctttgaagt aaaatgtgac aaggccgatt gtcagaaggt      3420
     gaatcaagtc agctatcaat cgctgattgg ctcattaatg tatctggcaa tcacaactcg      3480
     tcctgatatt atgcattcgg tcattaaact atcacaacgg aactctgacc cacataaaga      3540
     gcacgaagcc ggtgcaaagc gagttctgcg atacttgagg ggcacagctg atttgcagtt      3600
     acactacgag cgtactggtg tgcctataca ttgctatgtt gacgcggatt gggctggtga      3660
     caccacggac cgaaaatcct ttactggatg ggcatgtatt gctgcaggag ctgcctttac      3720
     gtgggactca aagaaacaat cagtggtttc cctaagcagc acagagtcag agtatgtggc      3780
     actttccatg gcagcgaagg aagtggcgta tgttcggaaa ttggtcaacg aaatgggttt      3840
     tggtgaaaca caggcaacta aggtttatag cgacaaccag agttcccagt gcttggtgaa      3900
     aaatgacact ttccatgcac gtagtaagca tatagatata aaatatcatt atataagaga      3960
     actgtataag aacaatataa tagaagttaa ttatgtaccc acagaaaaca tgatggcaga      4020
     tgttctaacc aagaatttga atagatttaa acatgaaaag tgtatccaag ggatgggttt      4080
     aaactaacaa aaatgtattt tgattttgga attaagataa aaatattatc cgtaagggtt      4140
     gacatattgc attgagaggg ag                                               4162
//
ID   COPIA2LTR_DM repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   20-JUL-2000 (Rel. 5.06, Created)
DT   20-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   COPIA2LTR_DM is a long terminal repeat from the COPIA2_DM
DE   retrovirus - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; COPIA2I_DM;
KW   COPIA2LTR_DM; Retrovirus; COPIA superfamily.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-198
RA   Kapitonov V.V. and Jurka J.;
RT   "COPIA2LTR_DM.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 198 BP; 58 A; 32 C; 34 G; 74 T; 0 other;
     tgttgaaaat atgtatgtaa tatgtatgta tatataataa tatgtaataa agtcaatgca        60
     ctgtgtctcc ctcttttggt cgcggtaacc aaaagctttt ttctcttatt gtgttatcct       120
     ctttagcgtg taatttggct gcctgcgtgc agtaacattg tactctagat cagtcacaat       180
     aaatacttga aacgaata                                                     198
//
ID   COPIA3-I_AG repbase;    DNA;    INV; 1607 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA3-I_AG is an internal portion of the COPIA3_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA3-I_AG; COPIA3-LTR_AG; COPIA3_AG; Copia clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1607
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA3_AG, a family of nonautonomous, copia-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 51-51 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA3_AG is a young family of Copia-like LTR retrotransposons.
CC   COPIA3-I_AG, an internal portion of COPIA3_AG is flanked by
CC   99-100%
CC   identical COPIA3-LTR_AG LTRs. The A. gambiae genome contains
CC   about 14,
CC   >98% identical, copies of COPIA3-AG internal sequence.
CC   The consensus sequence encodes the 500-aa COPIA3_AGp protein
CC   (positions 41-1540). The protein seems to be truncated, so the
CC   COPIA3_AG family is probably nonautonomous.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..1540
FT                 /product="COPIA3_AGp"
FT                 /translation="PKERFRKMERLGIAKLNGGNYSVWKTKVEFLLIREEL
FT                 WQYVISDGPGNTTASPTTEAIGAVWKSGDQKARATIGLLLEDNQLNLIKDC
FT                 KTAKATWEKLRGHYEKATLTSKVSILKNICEKRFSDGEDIEQHIFEMEELF
FT                 DRLTLTGEELSKSLQVAMVLRSLPQSFSVLTTALESRSDDELTLDLVKTKV
FT                 VDEVAKRGNRGCCDSVLKTIVKKNQMLCHFCQQPGHKRKDCLILMEKRSRD
FT                 LKQSEGQHGMKRSQLCVQTTDEETLEQEYSFTMRGFTANSWIVDSGATSHM
FT                 CIDRSCFVELDERYQQDVILADGTTARVEGIGSCRITTLSPEGKTSRVTLN
FT                 DVLFVPKLETNLVSVKKLTAKGAVILFDMSGCRIVKDQKVIALATISNGLY
FT                 SLKTRMQNVLTRKNARYRSIAKCLLMPMDLEYRNVQQKEEGLMLRKGELRK
FT                 RKLRKGESCSFVHCKDRTMSSGSRIWVGCHGKDMFGRCEKSIPRNNEFQSV
FT                 CCRS"
XX
SQ   Sequence 1607 BP; 497 A; 286 C; 440 G; 384 T; 0 other;
     ggttatgggc ccaggattag tggcgattaa aacgttttaa ccaaaagaaa gatttcgcaa        60
     aatggaacga ttgggaattg caaaactcaa cggaggtaat tacagtgtct ggaagacaaa       120
     ggtcgaattc ctcctcatcc gagaagaatt gtggcagtat gtgatcagcg atggaccggg       180
     taacacgacg gccagtccca ctaccgaagc catcggagca gtatggaaga gtggtgatca       240
     gaaggcgcga gcgacaatcg gccttttact ggaagataac caactcaatc taattaagga       300
     ctgtaagacg gctaaagcga catgggaaaa gctgcgagga cactacgaaa aggccacact       360
     aacttcgaag gtgtcgattt taaaaaatat atgtgagaag cgtttttccg acggtgagga       420
     tatcgagcag catatcttcg agatggaaga attgttcgat aggctaacat tgaccggtga       480
     ggagctaagc aagagcctgc aagtggcaat ggtgctccga agtctcccgc aatctttctc       540
     ggttctgacc acagcgttgg aaagcaggtc tgacgacgag cttacgctgg atttggtgaa       600
     aaccaaggtg gtagacgaag tagccaaaag gggaaacaga ggttgctgtg attctgtact       660
     aaagacaatt gttaagaaga atcaaatgtt atgtcatttc tgtcaacaac cagggcataa       720
     aagaaaggat tgcctgattc taatggagaa gcggtccaga gatttgaaac agtcggaagg       780
     ccagcatggt atgaaacgga gccagttatg tgtgcaaaca actgatgaag aaactctgga       840
     gcaggaatat tcgttcacga tgcgtggatt tacagccaat tcgtggatcg ttgattcagg       900
     agcaacatcg catatgtgta tcgatcggtc atgtttcgtg gagctggacg agcgttatca       960
     gcaggacgta attttggccg atggcacaac ggcgagggtt gaaggaatcg gttcgtgtcg      1020
     aataaccacg ctgtctccgg agggtaaaac atcaagagtg actcttaacg atgttttgtt      1080
     cgtcccgaag ttagagacaa acttagtgtc tgtgaaaaaa ctgacggcga aaggtgctgt      1140
     gattcttttt gacatgagcg gttgtcgaat cgtaaaggat cagaaggtta ttgcactagc      1200
     aacaatttca aatggattat attcactgaa gaccagaatg cagaatgtct tgacccgaaa      1260
     gaatgcccga tatcgatcaa ttgcaaagtg tttattgatg ccaatggatc ttgaatatcg      1320
     gaatgtacag cagaaggagg agggactgat gcttaggaaa ggcgagctta gaaaacgcaa      1380
     gttacgaaaa ggcgagtcat gttcttttgt acattgcaaa gatcggacta tgtcatcagg      1440
     gtctcgaatc tgggttggat gtcatggaaa agatatgttt ggaaggtgtg agaagtccat      1500
     acctagaaat aatgaatttc agagcgtgtg ttgtagatca tagcaacctc gatagttaga      1560
     atctgcgcct acaacttggt ttagagccag ccgagattga ggaggag                    1607
//
ID   COPIA3-LTR_AG repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA3-LTR_AG is a long terminal repeat of the COPIA3_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA3-I_AG; COPIA3-LTR_AG; COPIA3_AG; Copia clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-110
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA3_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 52-52 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA3-LTR_AG is a long terminal repeat of the COPIA3_AG LTR
CC   retrotransposon. There are ~20 copies of COPIA3-LTR_AG in
CC   the genome.
XX
SQ   Sequence 110 BP; 36 A; 19 C; 20 G; 35 T; 0 other;
     tgttgtgatc atagcaacct ctctagttta aacgaagtgt agtaggcttt attgaaatag        60
     agaataaatc agtctgcatt ttcctttcgt acgaacaaga agttccaaca                  110
//
ID   Copia3-NVi_I repbase;    DNA;    INV; 4130 BP.
XX
AC   AAZX01004352;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia3-NVi;
KW   Copia3-NVi_I; Copia3-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4130
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1129-1129 (2007).
XX
DR   Genome; AAZX01004352; Positions   19163   15034.
XX
CC   Positions [1633-2169] - Integrase core
CC   'TTAAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..4095
FT                 /product="Copia3-NVi_I_1p"
FT                 /translation="MAGEISTRSLVKFNSKNFQHWKFQITAAFVANGLLGQ
FT                 VDGTVPTLANKNDEEGQRWVKEDAKAMFLISSAMETEQMENLLVCETARNM
FT                 WERLTSVHKMKSQTHKLLMSQRFHEYRMDPNDTIVQHISKVQNLARQLIDI
FT                 GENIPDLVIMAKILASLPAKYRHFRTSWGVMESTRQTIELLQDRLIEEEAY
FT                 KTAEEKEETALAATTRNATQGAPKFNAKKKKNFRKSKNNIQCYVCSEKGHY
FT                 VRECPQKNSKQEKESRDNCALVASSRTATGHGQGDLAQRDAGVYFSEPTSE
FT                 QRKKILNAKLEDIWLTDSGASAHITFRREWLVNYRPRYEGSTIVLGDNHEC
FT                 AVVGEGSVRVKRLINGEWLDAQIDNVLYVPSMGKNLYSVEVCTTNGLNISF
FT                 SGDVVNISREGEIIATGVKQTNLVYRMCLLVQTSEQREANVATADVKVWHK
FT                 RMGHLNLRSFQSLVSKNLVKGVSVSGADEFFCEGCQIGKSHKLPFSKEVER
FT                 STESGEMFHSDVCGPMSEVTLGGASYYVSFIDDATSYRVVYFIKHNSDMTD
FT                 RFMTFEKLIRNKFDRTMKTLRSDNGKEYVNRRLEEYLESRGIVHERTAPYT
FT                 PEQNGTAERENRTIVECARTMLEASKWPNTLWAEAVNTAVYTLNRVLTPSK
FT                 NKIKTSYELWTGKKPDLSHLKVFGCSAYKYVPKIHTRKFDDQATKMIMVGY
FT                 EDNSTNYILLCPENMKVSVARHVKFNEAGIGLEKAEKTEEVDDEDKEDLLL
FT                 VPETNKEVREDVNNPPRNPEKVKEVENEDNGIGIRPSENAAKGAAESVSKR
FT                 QTSIPPAQRELRDRTKLQKPAKSLVNIAEIKLPTTFREATSGPDSEKWREA
FT                 IQEELGAHERIGTWVIVPRQENTRIIKSKWVFKVINNQSTGEARFKARLVG
FT                 KGFMLEEGIDYSETYAPIVRYDSLRVLLAYITLEDMEMVSFDVCAAFLYGD
FT                 LEEEIWMEVPEGVHVEKVDSGSVVCLLRKSLYGLKQAPRCWNVKFSNFLRR
FT                 FNFKEREADKCVYVGELEGHTVYLALFVDDGLLASKSSQIINKILNELRSE
FT                 YSITVGDASYFVGLQISRNRTEKLMFVNQNAYTQEILAKYGMGNAKCMSVP
FT                 VDPNVHLLAADPDCKNDCKAPYREAIGSLMYLAIVSRPDIAYAVNLLSKFV
FT                 CNFNEAHWAAVKRVFCETWSSQRQKMVTLSTTESEYVAAAAAAKEICWLSK
FT                 LENGIGCRCEDGVTLLVDNQSAIRLAKNPQYHKRTKHIDIRYHFIREICES
FT                 GEINIVYVASENQLADIFTKALPRDRFLHLRQSIGLVSEKELLE"
XX
SQ   Sequence 4130 BP; 1362 A; 754 C; 1030 G; 984 T; 0 other;
     ggttatgggc ccagacattg tctggaagcc aaagtaagag agactataag tgagtagtac        60
     ataaagacgc gagttagtcg ggcagtgaca tcaagccaaa aactgttcgc tcaagtgtgt       120
     ttctcgttcg tacccatgtc atataaactt ctacacgaga caaggtgtga aatttgagag       180
     atggcaggag aaatatcaac tcgtagccta gtgaagttca acagtaagaa tttccaacat       240
     tggaaatttc aaatcacggc ggcttttgta gcgaacggtt tactcgggca agtggatggc       300
     acagtgccta cactggctaa caaaaacgat gaggaaggac aacgctgggt caaagaagac       360
     gccaaggcta tgttcctaat ttcttcagcg atggaaacgg agcaaatgga aaatttactc       420
     gtgtgcgaga cagctcgaaa tatgtgggag agacttacgt ccgtccataa gatgaagtct       480
     caaacacata aactgctaat gagccagagg tttcatgaat accgcatgga ccccaatgac       540
     accattgtac aacacatatc gaaagtgcag aacttggcaa gacaactgat cgacattggt       600
     gagaatattc cagatctggt tataatggcg aaaatactcg caagtctacc tgccaagtac       660
     cgacattttc gaacatcttg gggagtcatg gagtcaactc gtcaaactat cgagctttta       720
     caagatcgac tcatcgagga agaagcctac aagacagcgg aagaaaaaga ggaaaccgcg       780
     ctggcagcta cgacgagaaa tgctactcaa ggtgctccaa aatttaacgc gaagaaaaag       840
     aaaaatttcc gtaagtctaa aaacaatatt cagtgttatg tgtgctccga aaagggacat       900
     tacgtgcgcg aatgtccgca gaagaatagt aaacaagaga aagagtctcg cgacaattgt       960
     gcgctggtcg cttcgagcag gacagcgacg ggtcacgggc aaggtgactt agcacagaga      1020
     gacgctggtg tttatttttc ggaaccaact tcggagcaac ggaaaaagat tttaaacgca      1080
     aagctcgaag atatctggct taccgacagc ggtgcgtcag cccacataac tttcagaaga      1140
     gagtggctgg taaattatcg accgaggtac gagggcagca ccatcgtgct cggtgacaat      1200
     cacgagtgtg cagttgtggg agaaggctcg gttcgtgtta agcggctgat aaacggcgag      1260
     tggctagacg cacaaataga caatgttctc tatgtgccaa gcatgggcaa aaatctatac      1320
     tcagtggaag tctgtacaac aaatggattg aacatcagct tcagtggaga cgtcgtcaac      1380
     atctcgcgcg aaggcgagat tattgcaaca ggtgtcaagc agacgaactt agtctatagg      1440
     atgtgcttgc tagtacagac gtctgaacag cgggaagcta atgtagccac agctgacgtg      1500
     aaagtttggc acaagaggat gggacactta aatctccgtt cttttcaaag tctagtgtcc      1560
     aaaaatctag taaaaggagt cagtgttagt ggtgcagacg agttcttctg tgaaggctgt      1620
     caaataggaa agtcacacaa actacccttc agcaaagagg tagaaaggag cactgagtcg      1680
     ggtgaaatgt ttcacagtga tgtgtgtggt cctatgtctg aagtcactct aggaggagca      1740
     tcatactatg tttcttttat agatgatgcg acttcataca gagtagtgta tttcataaaa      1800
     cacaattctg atatgacaga tcggttcatg acatttgaaa aactcatcag gaacaagttt      1860
     gacaggacta tgaaaacact aagaagcgac aacggcaagg agtacgtcaa cagaagactt      1920
     gaagaatatt tggagtcaag aggcatagtg catgagcgaa cagcacctta tacaccagaa      1980
     cagaatggta cggcggagag agaaaaccgt accatcgttg agtgtgccag aacaatgctg      2040
     gaagcatcaa agtggccaaa tacactttgg gcggaagctg taaacacagc tgtatacaca      2100
     ctgaacagag tgctgactcc aagtaagaac aaaatcaaga cgtcatatga attgtggact      2160
     gggaagaaac cagatctgag tcacttgaaa gtattcggct gtagtgcata caaatatgta      2220
     ccaaaaattc acaccagaaa gttcgacgat caggctacca agatgatcat ggtcggctat      2280
     gaagacaact caacgaacta catactacta tgtccagaga atatgaaggt gtcagtagct      2340
     cgtcatgtaa aattcaatga ggctggaata ggacttgaaa aagctgaaaa gactgaagaa      2400
     gtagacgatg aagacaagga agatctgctg ctggtacctg aaacaaacaa agaagttaga      2460
     gaagatgtca acaacccacc aaggaatcct gaaaaagtaa aagaagttga gaacgaggac      2520
     aatggaattg gaatcagacc atctgagaat gcggcaaagg gtgcagccga gtcagtctcc      2580
     aaacgtcaaa ctagtatacc acctgctcaa agggaactac gagataggac caaacttcag      2640
     aaacctgcta agtctctggt aaatatagct gaaattaaac ttcctactac ttttagagaa      2700
     gcaaccagtg gtccagattc agaaaaatgg cgtgaggcga tacaagaaga gctaggagct      2760
     catgaacgca ttggtacatg ggtcatagtg ccaagacaag agaacacaag gatcattaaa      2820
     agcaaatggg tcttcaaggt catcaacaat cagtcaactg gtgaggctcg tttcaaggct      2880
     aggttggttg gcaaaggatt catgctggaa gaaggtatag actacagtga gacctacgct      2940
     cccatagtga ggtatgactc tctacgcgta ctcttggctt acatcacatt agaagatatg      3000
     gaaatggtgt cattcgatgt ctgtgctgct ttcctgtacg gtgatctgga agaggagatc      3060
     tggatggaag ttcctgaagg tgtacatgtc gagaaagtag acagtggtag tgttgtgtgt      3120
     ctgttgcgaa aatccttata tggattaaaa caagcacctc ggtgctggaa tgtaaagttt      3180
     tctaatttct tgcgtagatt taattttaaa gagcgggaag cggataagtg tgtgtatgtt      3240
     ggagagttag aaggtcacac agtgtatctg gccttatttg ttgacgatgg cttgcttgca      3300
     agtaagtcgt cacaaattat aaataaaatt ctgaatgaat tacgtagtga atactccata      3360
     actgtaggag atgccagcta ctttgtggga cttcaaatta gtaggaatag aacagagaaa      3420
     ttgatgttcg taaatcagaa tgcgtatact caagaaattt tagctaaata tggtatgggt      3480
     aatgctaagt gtatgagtgt tccggtcgat ccaaatgtac atctgcttgc agcagatcct      3540
     gactgtaaga atgactgtaa ggctccatat agagaagcca taggatcact tatgtatcta      3600
     gcgattgtct ctcgaccaga tattgcttac gcagttaatc tgctaagcaa gtttgtgtgt      3660
     aattttaatg aagcccactg ggcagcagtg aaaagagtgt tttgtgaaac gtggagttct      3720
     cagcgacaga aaatggtaac gcttagtacc acagagtcag agtatgttgc tgcagctgct      3780
     gctgcaaagg aaatctgttg gttgagtaag cttgaaaatg gaatcggttg tcgatgtgaa      3840
     gatggtgtaa ctttgttagt tgataaccaa agtgctatta gattagctaa aaatcctcaa      3900
     tatcacaaga gaaccaaaca catcgacata cgataccatt ttataagaga gatatgtgag      3960
     agtggagaaa taaatattgt gtatgtagcc tctgagaacc agttagctga tatctttacc      4020
     aaggctttgc ctagggaccg atttttgcat ctacgacaga gcataggtct agtgagtgaa      4080
     aaagagttgt tagaataatg tagctggaga gcatacacaa aaggcggaag                 4130
//
ID   Copia3-NVi_LTR repbase;    DNA;    INV; 290 BP.
XX
AC   AAZX01004352;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia3-NVi;
KW   Copia3-NVi_I; Copia3-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-290
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1130-1130 (2007).
XX
DR   Genome; AAZX01004352; Positions   15033   14744.
XX
SQ   Sequence 290 BP; 75 A; 57 C; 56 G; 102 T; 0 other;
     tgttgtagtg taatttttcg tattgtctat atagagcgta tgtgtatgta tgtgctagag        60
     agagagcgct cctaaacgct ctctatctct ttctcgcgga gcgtcgcttt taactgttct       120
     gtgtagaata agaattcaaa ttagttagtt gagcacgagc gtctagagtg agcacacgtc       180
     tggtgcctct cttgtgtact tatagctaga ataaatctca atcaaacaga cattgtctct       240
     ctctcaataa acctttaata tcctgcttat atccgtgctc atatttaaca                  290
//
ID   COPIA4-I_AG repbase;    DNA;    INV; 4122 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA4-I_AG is an internal portion of the COPIA4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA4-I_AG; COPIA4-LTR_AG; COPIA4_AG; Copia clade; integrase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4122
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA4_AG, a family of autonomous, copia-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 53-53 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA4_AG is a young family of Copia-like LTR retrotransposons.
CC   COPIA4-I_AG, an internal portion of COPIA4_AG is flanked by >99%
CC   identical COPIA4-LTR_AG LTRs. The consensus was reconstructed
CC   from 6,
CC   >98% identical, copies of COPIA4-AG internal sequence.
CC   The consensus sequence encodes the 1322-aa COPIA4_AGp protein
CC   (positions 112-4077).
XX
FH   Key           Location/Qualifiers
FT   CDS           112..4077
FT                 /product="COPIA4_AGp"
FT                 /translation="MSTEEANSAGPSRESSAGAAALSGHAVGSNNLAMNVG
FT                 IEKLKGRENYVSWAFAMKMMLCRERCWDIVTARDDKAVDKDMDMRALSTIA
FT                 LSLEKHNYSLVMDANTAKEAWEKLKAAFTDDGVFRRISLLQELVSFKLNNF
FT                 SSTEAYVDAIMSTCHKLREIGFEVSDIWVSSILLMGLPKYYAPMVMGLEAS
FT                 GMAMKADAIKLKILQEVKTTCHKDDEALFSRGNPNLRKGGGAMKRSTKEVT
FT                 CYNCQKLGHFAINCPEKQKHKKNNKTRAMSSVLAMGDVSECEWYFDSGASS
FT                 HMAKSGVDFSERQHICHEVSTANNASMKAITKGTVSVNCQEGAVNLLNVLE
FT                 VPDLATNLLSVSKICKNGFKVVFTERKCEVFDENGEVFASGIAENGLYRLN
FT                 ENRVRTFLSYEIWHRRLGHLNFQSIQRLKGMADGIQTKQTNTYNCVACIEG
FT                 KHARESFPTSQERCKEKLELIHSDLCGPFEVESIGGSKYFMTFIDDATRKV
FT                 FVYMLKSKDEAKTVYEKFKSMVQRQSGRQIKLFRSDNGREYVNASMKASME
FT                 RDGICHQTTCTYTPEQNGVAERMNRTIVEKVRSMLNDAQLPKRFWAEAVNT
FT                 AVYLINRSPTRALNDITPEEAWSGKRPHLGHLKIFGSTVMVHKPKQKRVKL
FT                 DPKSERCIFLGYAHNTKGFRVFNVATNEIIISRDIIVVDEGQCEGFGKEQT
FT                 TPVEFLELLFAEGKDESNSTRNNPINISPTEEASDGQTEETPTRFDQSNET
FT                 PRRSQRQHKLPSKYKDYVINRKFVPSSTLANEAENVSSDSDYTTPESESDE
FT                 ALVVFSQREDPRNYAEAMKSEDAKQWMDAIQEELQSIEANNTWSLVDLPPG
FT                 RKAIGSKWVFKTKRDVDGNLLRYKARVVAQGFSQQFGTDYDEVFAPVVKQT
FT                 TFRVLMGIAAKRGMAVKQYDIKTAFLYGDLEEEIFMKVPQGVKVEDNKVCR
FT                 LKKGLYGLKQSARSWNQRLDQELKRQGYTNCLADSCLYRKRCGKEWCYVLV
FT                 YVDDLIVAGDNLDMIESLLAELKKSFEVNILGDIRFFLGIEVEKNKQGDYF
FT                 VNQRNYIKDVIISSGLTDAKPSSIPLDPGYIKIEAEEIELSDNKEYQQLIG
FT                 KLLYIAINTRPDISAAVSILSQKISKPTQRDWCELKRVVRYLKGTINYRLR
FT                 LSEKGCDNGIIGYCDSDWAENRIDRKSNSGYVFKVNGGTVSWTCRKQSCVT
FT                 LSTAEAEFVAISEGIQEALWLKLLLEELNDVQEVIIHEDNQSCLKILSGEK
FT                 LSNRTKHIATRYHFTKDLIKKGQISCVYCSTEEMIADLLTKPLARIRIQKL
FT                 VSLIGLSVSL"
XX
SQ   Sequence 4122 BP; 1415 A; 674 C; 1007 G; 1026 T; 0 other;
     ggttatgggc ccagacccaa tccaaaatta agtaattaat attctatcga agataaaagt        60
     gccacacttc acatcacccg aacaaagagt gaaattttgt gtacgagaga aatgagcacg       120
     gaggaagcga attccgcagg accgagcaga gagagcagcg caggagcagc agcactaagc       180
     ggccacgcgg tcgggagcaa caacctcgca atgaacgtag gtatcgaaaa gttgaaagga       240
     cgggagaact acgtttcgtg ggccttcgcg atgaagatga tgttgtgtag agaacggtgc       300
     tgggatattg taacggctag agacgataag gcggtagaca aagacatgga catgcgggca       360
     ttgtccacta tcgcgcttag cttagaaaag cacaattaca gccttgtgat ggacgctaat       420
     acagcaaagg aagcttggga aaagcttaaa gctgcgttca ctgatgatgg tgtgtttaga       480
     cgtatctctt tattgcaaga gcttgtttcg ttcaaattaa ataatttttc ttcgaccgaa       540
     gcatatgttg atgcaataat gtctacgtgc cacaagctta gagaaatagg cttcgaagtg       600
     agtgatattt gggtttcgtc aatcctgctg atgggattac ctaaatatta cgcgcccatg       660
     gttatgggat tggaagcatc gggaatggcc atgaaggcag atgcgataaa gttaaaaatt       720
     ttgcaagaag tgaaaaccac gtgccacaaa gatgatgaag cgctctttag tagaggtaat       780
     cctaacctgc gtaaaggggg aggagcaatg aagagaagca caaaagaggt tacatgctac       840
     aattgccaaa agctagggca ttttgcgatt aattgtcctg aaaagcagaa gcacaagaaa       900
     aataataaaa cacgtgcaat gagttctgtg ttggcaatgg gtgatgtgag tgaatgtgaa       960
     tggtactttg attcaggagc aagttcgcac atggcaaaat caggtgtaga tttctcggaa      1020
     agacaacaca tatgtcacga ggttagtacg gcaaacaatg ctagcatgaa agctattacg      1080
     aagggcacag tttccgtaaa ttgccaagaa ggtgcggtaa atttattaaa tgtgttagaa      1140
     gtaccagact tagctacaaa tttactatca gttagtaaaa tatgtaaaaa tggcttcaaa      1200
     gtggtattta cagaacgtaa atgcgaagtg tttgatgaaa atggagaagt gttcgcatcg      1260
     ggtattgctg agaatggatt ataccgattg aatgaaaata gagtgagaac atttttatcc      1320
     tatgaaatat ggcacaggcg actaggacat ttgaatttcc aaagtattca aagattaaaa      1380
     ggcatggccg atggcattca aactaaacaa actaacacgt acaattgtgt agcgtgcatt      1440
     gaaggcaaac atgcaagaga gtcgtttcct acaagccaag aaagatgcaa agaaaaatta      1500
     gaactgattc attcagatct atgtggacca tttgaagttg aatcaattgg tgggtcaaaa      1560
     tacttcatga ctttcataga tgatgcaaca cgtaaagtat ttgtgtatat gctcaagtct      1620
     aaagatgaag caaagacagt atacgagaag tttaaatcga tggtacaaag gcaaagtggt      1680
     cgacaaataa aattatttag aagtgacaac ggtcgtgaat atgtaaatgc cagtatgaaa      1740
     gcgagtatgg aacgtgatgg aatatgtcat caaacgacat gcacgtacac tccagaacaa      1800
     aatggagtag cggagcggat gaaccgcact attgttgaaa aggttcggag catgctaaac      1860
     gatgcgcagt taccaaagcg attttgggcg gaagcagtta acactgctgt atatttaatt      1920
     aatcggagtc ctacgagagc gttaaatgac attactccag aggaggcatg gtcaggcaaa      1980
     agaccacatt tgggacatct caaaatattt ggctctacag ttatggtaca caagcctaag      2040
     cagaaacgag taaaactcga tccaaaatcc gaacggtgca ttttccttgg ttatgcacac      2100
     aacacaaaag gatttagagt ttttaacgtt gccaccaacg aaataattat cagtcgtgat      2160
     attattgtcg ttgatgaagg tcaatgtgaa ggttttggca aggaacaaac aactcctgtt      2220
     gagtttctgg aactgctttt tgctgaagga aaggatgagt caaatagtac acgtaataat      2280
     ccgattaata tttcaccaac agaagaagca tcggatggtc agacagaaga aaccccaaca      2340
     aggtttgatc agagcaatga aactccaagg cgcagtcaac gacaacacaa acttccaagc      2400
     aagtacaaag attatgtcat taatcgcaaa tttgttcctt catcaacatt agctaacgaa      2460
     gcagaaaacg tatcgagtga ctcggactat acgacaccag agagcgagtc tgatgaagcg      2520
     ttagttgttt tctcgcagcg agaagatccc agaaactatg ctgaagctat gaagtctgaa      2580
     gatgctaaac agtggatgga tgctatccaa gaagagcttc agtctattga ggctaacaat      2640
     acatggtcac tggtagacct accaccggga cggaaggcga taggcagcaa gtgggtcttc      2700
     aagactaaga gagatgtgga tggaaatttg ttgcgttaca aagctcgtgt tgttgcgcaa      2760
     gggtttagtc agcagtttgg aactgactat gatgaggtat ttgcaccagt tgttaagcag      2820
     acgactttcc gtgtgctaat ggggattgcg gcaaaaaggg gaatggcggt aaagcagtac      2880
     gatattaaga ccgcgtttct gtacggcgat ttagaagaag aaatctttat gaaagttcca      2940
     caaggtgtga aagtggaaga taacaaggtt tgtagattga agaaagggct atacggctta      3000
     aaacaatcag caagatcgtg gaatcagaga cttgatcaag aactaaagcg ccagggatat      3060
     acgaattgct tagcagacag ttgcttgtac aggaaaagat gcggaaagga atggtgctac      3120
     gtcttagtat atgtagacga tttgatagtt gcgggagata atcttgacat gattgaatca      3180
     ttgcttgctg aattgaaaaa gtcgtttgag gttaacattt tgggcgacat aagattcttt      3240
     cttggaatag aagtagagaa aaataagcaa ggagattatt ttgttaatca gcgcaactac      3300
     atcaaagatg taattatctc tagtggatta acagatgcaa agccttctag tattcctctt      3360
     gatccagggt acataaagat cgaagcagaa gaaatcgaac tttctgataa taaggagtat      3420
     cagcagttaa taggcaaatt gctttatatt gcgattaaca cgagaccaga tatatcggca      3480
     gccgtatcaa tacttagcca aaagataagt aaacccacac aacgcgattg gtgtgagtta      3540
     aagagagttg tgagatattt aaagggaacc attaactatc gtctacgatt gagcgaaaaa      3600
     ggatgcgata atggtataat tggctattgt gactcagatt gggccgagaa cagaatagat      3660
     agaaaatcca acagtggata tgtttttaaa gtaaacggcg gtacggttag ttggacttgt      3720
     agaaagcaat catgcgtaac gttatcaaca gccgaagcag aatttgtcgc aatatcagaa      3780
     gggatacagg aagcgctgtg gttgaaatta cttcttgagg aattaaacga tgtacaggaa      3840
     gttattattc acgaagacaa ccagagctgt ttgaaaatct tatcaggcga aaagttgagt      3900
     aatagaacta agcatattgc aacgcgctat cattttacta aggatctaat taagaaagga      3960
     cagatcagct gcgtctattg ttcaacagaa gaaatgatcg cggatctatt aactaaacca      4020
     ttagccagga ttagaataca gaagttagta agcttgatag ggttaagtgt ttcactgtga      4080
     gatatacaac gacagcgtaa gggaacttgc gttgaggagg ag                         4122
//
ID   COPIA4-LTR_AG repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA4-LTR_AG is a long terminal repeat of the COPIA4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA4-I_AG; COPIA4-LTR_AG; COPIA4_AG; Copia clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-198
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA4_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 54-54 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA4-LTR_AG is a long terminal repeat of the COPIA4_AG LTR
CC   retrotransposon. There are ~20 copies of COPIA4-LTR_AG in
CC   the genome.
XX
SQ   Sequence 198 BP; 76 A; 38 C; 31 G; 53 T; 0 other;
     tgttgttatg aaccaacgca agatgattct catgagaact ggatttagta atgaaaacac        60
     agaacgaaat tttatagcaa atagagagaa ttatattgtc aaaattagga ataaagaaaa       120
     ccctcttccg ttactgcatc caaccaaaca agacgtgttt tctctcagct ccgaacataa       180
     ccctagtagt ttacaaca                                                     198
//
ID   Copia4-NVi_I repbase;    DNA;    INV; 4731 BP.
XX
AC   AAZX01004118;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia4-NVi;
KW   Copia4-NVi_I; Copia4-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4731
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1110-1110 (2007).
XX
DR   Genome; AAZX01004118; Positions    6664    1934.
XX
CC   Positions [1714-2244] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1807..3081,3085..4398)
FT                 /product="Copia4-NVi_I_1p"
FT                 /translation="MGKAKYIITFLDDLSRKTFVYFLKTKDEVPAVVQNFI
FT                 KLVNNQTQKKVKIFRSDNGKEYVNQRLKAALEQLGVKHETSIPYVPQQNGR
FT                 AERVNRTLLEKMRCMLAEAKLSKMFWAEAISTACYISNRSPRRCLNGRTPE
FT                 EVWPGSQTDLSSLRVFGCRARAYVPSYQRSKIDLTSKPAILLGYCEDQKGY
FT                 RLWNESERKVFTSCNVQFFEEPHGIAQKSKSVYFPVESENLDESTIPQNVV
FT                 EPEKETIDVDLPVKKKIVEPVNKKDVEPAVEPVKKKIVEHVKKKIVEPVNK
FT                 IICKNVPVEESEETRCVPEKENRKRDSQGLNHSSEPVIKRTKQTDSDILTL
FT                 NPAAEKCSRSTQRPNTRSAGRQAKSVDEGSSDEDFSSVPIRKSMRRKLKPK
FT                 HLDEFVTYSAISETGEPQSYQQEINGPEVEQINAMREEYQSIIKNSTWELC
FT                 DLPHGQPVIGSKWILTTTYKARLVARGFSQVRGINYDETYSPVVRYTSLRL
FT                 LFAYAARRDFDIFHLDVETAFLHGEMGKTVFLQQPQGFIKRGHETKVCRLK
FT                 KAMYGLKQGSRNWNLKLDSAFKSLNLVQSNYDSCVYTYKTVNKSIIVALFV
FT                 DDILVFTDSTDFFNILKDGLKSVCTIKDLGPVRRCLGINIHHERTLGVIEL
FT                 AQKDYIATLLENFGVDECRPTTTPMDSNHTQAQNSFSEESLPVNQIPYQNA
FT                 VGSLLYLAQATRPDLAYAVSTISKYNQNFNESHWNVVKRIFRYIQGTKDLR
FT                 FRYSKQDNPSIIGYCDASWATDPDDSRYTSGYVFTCQGSAISWNSRRQATV
FT                 ALSSTEAEYLSLSAATQEAMWLRRLSIELSIQPEEPFWFTVTTKVQSISPT
FT                 ILVLVHVPSI"
XX
SQ   Sequence 4731 BP; 1596 A; 943 C; 1048 G; 1144 T; 0 other;
     tagtgtaatt gagttgcaaa ttcattaaag ataatatatt cttaagagat agtgagtgac        60
     tttattttac ctggcttcac acacctgctt ccatacctaa agcatcaggt tatgggccct       120
     gccccattca aagaactccg aaaaagtttt ctttgccgtg atatgtgcga aaccgaggtc       180
     gaacagtgcc ggctataaat atagcgaatt acgcaacact acagttagag tgcagaattt       240
     gaaaatggcg agtcgcagtt caaacggtac ataccaactc atcgacaaat tagttggccg       300
     tgaaaattat agacagtggt cagtagccat gagggcttac ttggaagtcg aagatctatg       360
     ggacaccata gaagctcgca cagacggcac cctgtctaca gatccgaaaa agatgcagaa       420
     aacgcgtggg cgcataattc ttgcagtgga atccgaagta tacgcgtaca tcgaaaatac       480
     gacatcaccg caagaggtct ggaatgagtt ggcaaaaact tatgatgata agggactgac       540
     cagaaaagta tcgcttctac aagcaactac cacgactaga ctgaaaaatt gcagatgtat       600
     ggaagagtac gtatcaaata ttatttctgc tactaaaaag ctcagcgcaa gtggcacaaa       660
     attgcaagaa gatttagtgg gtgcgctttt gctgtcgggt ttaccgtcat catatcagcc       720
     tatgataatg gcgcttggaa gctccggagc agaaataacg gccgatttgg tcaaaaacaa       780
     attattagaa gaaaactaaa atggcgtccg tgaaagcgac tccgaaacgc tcggactcta       840
     cacgcaccag tcgcatcact caagcttcca gtctcgaaat tcgaacaaca gagggcgcca       900
     cccatccaag caaaagcagc gtaatcagta tggtcacttg gcgaatagat gtacagtcca       960
     gaatcgcaaa tcccaaaaag cttgcacagt agctacatca gctgacgaga gcgaatgtga      1020
     ggacactgtg tgaccacgtt aaccatgcgt gatactcact cagccgtcgt cgacactgtt      1080
     cttgccgatg ctgaagccca aaccacgata cctgtggaga cgttgtttgt agtggatcta      1140
     gtgagtaatg caagcaaatc agaatggatt ttagactccg acgcgtcaat ccacatgtgt      1200
     tgaagtgacg cgcatatgtc taacgtgcga aaaccaaaga ctgctacagt tacagcagct      1260
     aacaaagcta aggtgccagt aaaagcagaa ggtgaattgg tcttacagta ttatgatgac      1320
     aacaaatact ccaaagtgcg tcttgagaat gtgctttgcg tacctgacat aacatcaaat      1380
     ctgatatcag tcagtgccct agtcaagaaa ggatttagag ttttatttaa agatactaag      1440
     tgtgaggtga taggcaagaa caacgtggtt gtgctccaag gccaactaac aaacaacaac      1500
     atctacaaga taaaccttag accaaattca caccaggaag caaccaagtc agtaatagct      1560
     ctcaaggtca ctgaaaagtg tagcatagat ctgtggcaca gaagaatggc gcatttaaat      1620
     cagtaatatt taaatcagct tcgccaggta accacaggta ttgactttga taagagccag      1680
     gttggcaagt gtgaaatttg tgtcacagga acgctcgtgc aaaagccttt tcatcaaaac      1740
     aataaaagta ccaacagtat attggacctt gtgcatagtg atgtctgtcc agtagatcac      1800
     ctgtcaatgg gcaaggccaa gtatattatt acattcctag atgatctttc gagaaagacg      1860
     tttgtttatt ttttaaaaac taaagatgag gttccagcag tggtacaaaa ttttattaaa      1920
     ctagtcaaca atcaaaccca gaagaaagtc aagatattta gaagcgacaa cggtaaagag      1980
     tatgtcaacc agagactgaa agcagcattg gagcagctcg gtgttaaaca cgagacctcc      2040
     ataccgtatg ttcctcagca aaatgggaga gcagagaggg tcaacaggac cctattagaa      2100
     aaaatgaggt gcatgttggc agaggccaag ctatcaaaga tgttttgggc agaagctatc      2160
     tctacagctt gttatatttc taacagaagc cccagaagat gcttgaacgg acgtacgcct      2220
     gaagaagttt ggccaggaag ccagacagac ttgtcgtctc tcagagtatt cggatgtcgt      2280
     gccagggcct acgtgccaag ctatcagaga tcaaaaattg atctcacatc taaaccagct      2340
     attctactag gctattgcga agatcaaaag ggctacagac tctggaatga gtcagaaaga      2400
     aaagttttta cctcttgcaa cgttcaattt tttgaagagc cacacggcat agcccagaag      2460
     tctaaatcag tatacttccc tgtagagtca gagaacttag atgaaagcac gataccgcag      2520
     aatgttgttg aacctgaaaa ggagacaatt gatgtagact tacctgtaaa gaagaaaatt      2580
     gttgaacctg taaataagaa agatgtagaa cctgctgtgg aacccgtaaa gaagaaaatt      2640
     gtcgaacatg taaagaagaa aattgttgaa cctgtaaata aaattatatg taagaatgta      2700
     cctgtggaag aatcagagga aactagatgt gtacctgaaa aagaaaatag aaagagagac      2760
     tcgcaagggc taaatcacag ctcagaacca gtgatcaaga ggactaagca gactgacagt      2820
     gacatcctaa ccttgaatcc cgcagcagaa aagtgtagca gaagcacaca aagaccaaac      2880
     accagatcag ctggtagaca ggcaaagtca gtggatgaag gaagctccga tgaagacttc      2940
     tcatcagtac ctattcgcaa atctatgcgc aggaagctta agccaaaaca tctggatgag      3000
     tttgtgacat attcagctat tagcgagaca ggagaaccac agagttatca acaagaaatc      3060
     aatggacccg aggttgagca gtgaataaat gccatgagag aagaatacca gtcaattata      3120
     aagaattcta catgggaatt atgtgattta cctcatggac aaccagtcat cggatccaaa      3180
     tggattttaa ctacaacata taaagctaga cttgtggcac gaggtttctc ccaggtgaga      3240
     ggaataaact acgatgagac ctactctcca gtggtgcgtt acacatcact gagactgctc      3300
     tttgcctatg cagccagaag ggacttcgac atctttcact tggacgtgga gacagccttc      3360
     ttgcacggtg agatggggaa gacggttttt cttcagcagc cccagggatt tattaagaga      3420
     ggacacgaaa ctaaggtatg cagattgaag aaagctatgt atggtctaaa acaaggaagc      3480
     agaaactgga atttgaagct ggacagtgct ttcaaaagtc tcaacctcgt tcaatccaac      3540
     tatgattcat gtgtttatac atataaaaca gtaaataaat ccattatagt ggcattgttt      3600
     gtcgatgata ttttagtttt tacagacagc acagatttct tcaacatact caaggatgga      3660
     ttgaagagtg tctgcacaat aaaggacttg ggacctgtcc gtagatgcct tggaatcaat      3720
     attcaccatg agaggaccct gggtgtaatt gagttggccc aaaaggacta catcgccaca      3780
     cttctggaga attttggcgt ggacgaatgt agaccaacta ccactcccat ggacagcaac      3840
     catactcaag ctcaaaatag tttttctgaa gaatcgctcc cagtgaacca aattccttac      3900
     cagaatgctg tgggatcgct tctgtatctg gcacaagcta cgaggccaga cctggcctac      3960
     gctgtcagca ctataagtaa gtacaaccaa aactttaatg agtcacattg gaatgtggtc      4020
     aaaaggattt ttagatacat ccaaggcacc aaggacttaa gatttaggta cagcaagcaa      4080
     gataatccaa gtattatagg ctactgcgat gccagctggg ctacggaccc agatgactca      4140
     agatatacat ctggctatgt ttttacctgt caagggagtg cgatcagctg gaacagcaga      4200
     aggcaagcca ctgtggcact ttcaagtaca gaagcagaat acttatctct gtctgcagcg      4260
     actcaagaag caatgtggtt gagaagactc agtatagaat tgtcgattca gcctgaagag      4320
     cctttttggt ttactgtgac aacaaaggtg caatcgatct ctccaacaat tctcgtttta      4380
     gtccacgtac caagcatata aacgtgagac accattttat aaaagagatc attcaaacca      4440
     aacagataag ggtaagattc gcgagttcat ctcatattct agctgattct ctaacgaagg      4500
     cagctactcc caggaaaatt caagattttg tcggtgcagt gggactcaag acaaatcaag      4560
     agcagaagaa atctcaaggt cataacaagt gatcaagact gaagatagat tataaatgta      4620
     tattttattc gattgaacct ttaaaaaaaa aaatttttat aatgtaattg tccgagtatt      4680
     agtaattgtg atattgtact gcgaatgaca attatttagt tgagaggagc g               4731
//
ID   Copia4-NVi_LTR repbase;    DNA;    INV; 755 BP.
XX
AC   AAZX01004118;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia4-NVi;
KW   Copia4-NVi_I; Copia4-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-755
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1111-1111 (2007).
XX
DR   Genome; AAZX01004118; Positions    1933    1179.
XX
SQ   Sequence 755 BP; 210 A; 144 C; 127 G; 274 T; 0 other;
     tgatgtaatt ctgtagaaac aactaatata attgtctatt cgagctttcg aattgccgct        60
     tagattctct attgatcaga gtagttgtaa cgcgtctaat cataggtacg gtagaacgcg       120
     ttaaattctt actctctctc tctctctctt cccggataac caccgaagcg ttcggacgat       180
     cgcctaatac tcatagtgta attgagtcgc aaattcatta aagataatat attcttaaga       240
     gatagtgagt gactttattt tacctggctt cgcacacctg cttccatacc taaaacatca       300
     aattctatat tacatttttt tttacatcac ctttttaatc ataactagcg cgcgacacac       360
     ggccttaccg gcgctcgcct cgatattgcc tgatggtcgc actccgctcg aacgtgaggt       420
     aatcaattaa agcttttggg ccaaatgggg cgtgtcacac cgaaattgtt attcaattat       480
     atgtaccaaa aatcgtttct agggttgttg tttatgtata agcgttttga acacatgttt       540
     gtcatggtaa aaagttgtgt tttcaaatta tctacaactt ttacgtttaa ggtttttatg       600
     taaaatgtat actagtttat tcctataaca aaatcgattt tgccctgtta actcgaatta       660
     aaagcatttt cacgcttaag tgtctagagg aaagagtttt tttccttgag atctataact       720
     tttctattta actttttttt tgtttgtaga atgca                                  755
//
ID   COPIA5-I_AG repbase;    DNA;    INV; 4021 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA5-I_AG is an internal portion of the COPIA5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA5-I_AG; COPIA5-LTR_AG; COPIA5_AG; Copia clade; integrase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4021
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA5_AG, a family of autonomous, copia-like LTR
RT   retrotransposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 55-55 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA5_AG is a young family of Copia-like LTR retrotransposons.
CC   COPIA5-I_AG, an internal portion of COPIA5_AG is flanked by 100%
CC   identical COPIA5-LTR_AG LTRs. The consensus was reconstructed
CC   from 5,
CC   >99% identical, copies of COPIA5-AG internal sequence.
CC   The consensus sequence encodes the 1312-aa COPIA5_AGp protein
CC   (positions 76-4011).
XX
FH   Key           Location/Qualifiers
FT   CDS           76..4011
FT                 /product="COPIA5_AGp"
FT                 /translation="MALPSSSNSSSSFVGSTSIPSIERLLGRENWTSWKFA
FT                 AKTFLQLEGLWEVVKPVKKEDGTFETVDEKKDLQARLKLILLLDPTIYVHI
FT                 EDAESARSAWDKLEMAFEDKGLSRQIGLLHKLIKSDLDTCGSMNSYVNQVI
FT                 STANQLNAIGFKLPDLWVGMILLAGLPEEYRPMILAMENSGVAITGDYVKT
FT                 KLLQERPLLRNENVQALATNKRREVFKPKQKPSSSKGPQCRKCGRYGHIAK
FT                 FCKDDRKGGTTLCTVLSTFGNSEANEWILDSAAYAHMTSNKDLLSNLQNAT
FT                 GKVVAANGGTLDIVARGTAIIQPKCMEEIVTISDVKLIPGLTSNLLSVSRM
FT                 VEKGYTVQFNTKGCKVYNPSGKLVLTGIHNNNQFKVEQVANNMQEALSCNT
FT                 AESFELWHKRMGHLGAVNLKKLAGGLATGITLKNMDGADCRVCPLGKHSKL
FT                 PFPKKGSRAENVLDLVHSDINGPMETHSLGGHRYYITFIDDKTRRIFVYFL
FT                 KTKSEVEVFEAFKRFHAMAERQSGRKLKTLRTDNGKEYMNKSLTSFLQKEG
FT                 IRHETSNGYTPQQNGLAERANRTIVEMARCLLFEGNMTKGFWAEAVSTAVY
FT                 LINRSPTRGHNLTPEEAWNGRKPDLSHLRVFGTKAMVMIPKEKRRKWDPKS
FT                 HECVLTGFDEETKGYRLYDHKKKQTIISREVIFLDEGCSSNVTVTAMQEPR
FT                 RTFVRLDIEETTSIQPVQIPVPNFAPDAGSDSTLEENDAETDGELDESTTD
FT                 DENNTSTETMVQSEDDSSDFLGFSGSDVDGFVAVASGMYSGTYADPVSHQE
FT                 ALARDDSKEWGTAMQEEYNALMENKTWTLTSLPKGRQAIKCKWVYRTKCDS
FT                 SGNLTRYKARLVVKGFSQRKGEDYDETYAPVVRYCSLRYLFALAIKHDLMI
FT                 DQMDAVTAFLQGDLDEDIYMEQPPCFVDGQRKTLVCKLNKAIYGLKQASRV
FT                 WNNKLDAALQRFGLIPTQYDPCVYVGSEGGKIIIVAIYVDDMMIFSNDVAW
FT                 KKQLKKHLCSCFRMKDLGAAQHCLGIRIQRTKETIKLDQEIYIESILKRFN
FT                 MDKCKPVAVPMNNSEKLTKEESPKSNNETAAMKDVPYQEAVGCLMYLAQST
FT                 RPDILYAVNMLSRFNKNPGQKHWNGVKHVMRYLRGTSNFKLVYKKNVDSKI
FT                 IGYCDADWGSDPDERKSTTGNIFMAQGGAISWMCKKQPTVALSTCEAEYMS
FT                 VSAAVQEASWWRGLSAKLANADEVIEIRCDNQSCIAIAKNGGYHPRTKHID
FT                 IRHHFIKDALSRGIVTLEYVSTEDQIADGLTKPLQRTKFEISRELMGISEA
FT                 "
XX
SQ   Sequence 4021 BP; 1253 A; 755 C; 1017 G; 996 T; 0 other;
     ggttatgggc ccagactcga aaattgatta aagatccaga atatcgaaga cttgaatcta        60
     gaaagtttag tgaaaatggc gcttcctagc tcaagcaatt cctcgtcaag tttcgtcggt       120
     tcgacaagta ttccctccat tgaacgtctg ctcggtcggg aaaattggac atcctggaag       180
     tttgctgcta aaacgtttct acaactcgaa ggactttggg aagtagtaaa acctgtgaaa       240
     aaagaggatg gaactttcga aacggtggac gaaaaaaagg atttgcaagc cagattgaag       300
     ctcatccttt tactcgaccc aacaatttat gtccatattg aagacgcgga atcggctcga       360
     tctgcttggg acaaattgga aatggcgttt gaggataaag ggctttctag gcaaatcggc       420
     ttgcttcaca agctgattaa gtctgatttg gatacatgtg gctcaatgaa ttcatacgtg       480
     aatcaggtaa tatccacggc aaaccaacta aatgccattg gtttcaaatt gcccgacttg       540
     tgggtaggaa tgattctttt ggctggttta ccggaagagt atcgaccgat gattttggct       600
     atggagaatt ctggtgttgc aatcacaggc gactatgtga agacaaaact tcttcaagag       660
     aggccgttgc tacgtaacga aaatgttcaa gcgttagcca ctaacaaacg tcgtgaagtt       720
     ttcaagccaa aacagaagcc ttcttcgtcg aaaggtccgc aatgtaggaa atgtggccgg       780
     tatggtcata ttgcgaaatt ctgcaaggat gatcgaaaag gaggaacaac gttgtgtacg       840
     gtgctatcga catttggaaa cagtgaagct aacgagtgga ttttggattc ggcagcgtat       900
     gcgcacatga ctagcaacaa ggatttattg agcaacctgc aaaacgcaac aggtaaagta       960
     gttgctgcta acggaggaac tctggacatt gtcgctcgtg gaactgctat aatacaaccg      1020
     aaatgcatgg aagagattgt aacgatcagc gatgtaaagc tgattccagg tttaacatcg      1080
     aatttacttt cggttagcag gatggtagaa aagggatata ctgttcaatt caacaccaaa      1140
     ggttgcaaag tatataaccc tagcggcaag ttggtgctta ctggtattca caacaataat      1200
     cagttcaagg tggaacaggt agcgaacaac atgcaggagg ctctgtcgtg taacacagca      1260
     gaaagtttcg aattgtggca taaacggatg gggcatctgg gtgctgtgaa tctcaagaaa      1320
     cttgctggtg gtttggcaac tggcatcaca ttgaaaaata tggacggtgc ggattgcaga      1380
     gtttgcccgt taggcaaaca ttcgaagtta ccgtttccga agaaaggttc tcgagctgaa      1440
     aatgtcttgg atttggttca ttcggacatt aatggaccga tggaaacgca ctcgcttggt      1500
     ggacatcgat actacatcac gttcatcgat gacaagacga ggcgtatatt cgtttatttc      1560
     cttaagacga aatctgaagt agaagttttc gaagccttca agagattcca cgcgatggcg      1620
     gagcgtcaaa gcggaaggaa gcttaaaaca ctacgtacag ataacggtaa ggaatatatg      1680
     aacaaatccc taacatcgtt cttgcagaaa gagggcatcc gccatgaaac ttcgaacgga      1740
     tacacaccac agcaaaatgg actggcggaa cgtgccaaca gaactattgt ggaaatggcg      1800
     cggtgtttac tgttcgaagg aaacatgacc aaaggttttt gggcggaggc ggtttcaaca      1860
     gcagtttatc ttatcaatcg ttctcctaca cgtggacaca atttaactcc tgaagaagcg      1920
     tggaatggaa gaaaacctga tctttcacat ctgcgtgtgt ttggaacgaa agcgatggta      1980
     atgattccga aggagaagcg acgtaaatgg gatccgaaat ctcatgagtg cgttctgact      2040
     ggctttgatg aagaaacgaa aggatatcgt ctgtacgacc ataaaaagaa gcaaacgatc      2100
     attagccgcg aagtaatttt tttagatgaa ggttgttcat cgaacgtgac agttacagca      2160
     atgcaagagc caagaagaac attcgttaga ctggacatcg aggaaacaac ttcaatccaa      2220
     cctgtgcaaa tcccggttcc caattttgca cccgatgctg gatcagacag cacgttggaa      2280
     gaaaatgatg cagaaacgga tggtgaactc gatgaaagta cgacagatga cgaaaacaac      2340
     actagtacag aaacgatggt acaatctgaa gacgattcga gtgattttct tgggttttcc      2400
     ggaagcgatg tcgatggctt tgtagcagtt gcgtctggta tgtacagtgg aacatatgct      2460
     gatcctgttt cacaccaaga agcactcgct agggatgata gcaaagaatg ggggactgcc      2520
     atgcaggagg agtataacgc tctgatggag aacaaaacct ggacgctaac ttcgctcccg      2580
     aaaggaagac aagccataaa atgcaaatgg gtgtatcgga ctaaatgcga ttcatctgga      2640
     aatttaactc gatacaaggc tcgtttggtc gtcaaaggat tctcacagcg aaagggggaa      2700
     gattatgatg aaacgtacgc tcccgtggta cggtattgtt cgctgcgata cctttttgcc      2760
     ctggctatca agcatgatct gatgatagat caaatggatg cagtaacagc atttctgcaa      2820
     ggagatcttg atgaagatat ttacatggag caaccacctt gcttcgttga tggacagcgg      2880
     aaaacgttgg tatgtaaact taacaaagct atttatggtt tgaagcaggc gagccgagtt      2940
     tggaacaaca aactggatgc agcattacaa cggttcggcc tgataccaac tcagtacgat      3000
     ccttgcgtgt atgtaggtag cgaaggaggt aagatcatta tcgttgctat atacgttgac      3060
     gacatgatga tttttagcaa cgatgtggca tggaaaaagc agctgaagaa acatctttgt      3120
     agttgtttcc gtatgaagga tttaggagca gcacagcact gcctaggtat aaggattcaa      3180
     cggacaaaag aaaccatcaa gttggatcaa gaaatctaca tagaatctat tttaaagagg      3240
     ttcaatatgg ataaatgtaa accagtggca gttccaatga acaacagtga gaagctgacc      3300
     aaggaagaaa gtccgaagag taacaatgaa actgctgcga tgaaagatgt gccgtatcaa      3360
     gaagccgttg ggtgtttgat gtatttggca caaagtactc gaccagacat tctgtacgcg      3420
     gtgaacatgc tgagtcgatt caacaaaaat ccaggacaaa aacactggaa cggagtgaag      3480
     catgttatgc gctatcttcg agggacttct aattttaaat tggtttacaa aaaaaatgta      3540
     gattcgaaaa ttatcggtta ctgtgatgct gattggggat ctgatccaga tgaacgaaaa      3600
     tccaccactg gcaacatctt tatggcgcaa ggaggagcaa tttcatggat gtgcaagaag      3660
     caaccgacgg tagccttatc tacgtgtgag gctgaataca tgtctgtatc ggcggcggta      3720
     caggaagcct catggtggcg cggactttct gcgaaactgg cgaatgcgga tgaagtgatt      3780
     gaaattcgtt gtgacaatca aagctgcatt gcgatcgcga agaatggtgg gtatcatcca      3840
     cgaacgaaac acattgatat tcgtcaccat ttcatcaaag atgctctcag ccgtgggatt      3900
     gtcactctag aatatgttag cacggaggac cagattgcag atggacttac taaaccattg      3960
     caacggacta aattcgagat tagtcgcgag ttaatgggta tctctgaggc ttgaggagga      4020
     g                                                                      4021
//
ID   COPIA5-LTR_AG repbase;    DNA;    INV; 108 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA5-LTR_AG is a long terminal repeat of the COPIA5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   COPIA5-I_AG; COPIA5-LTR_AG; COPIA5_AG; Copia clade;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-108
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "COPIA5_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 56-56 (2003).
XX
DR   [1] (Consensus)
XX
CC   COPIA5-LTR_AG is a long terminal repeat of the COPIA5_AG LTR
CC   retrotransposon. There are ~5 copies of COPIA5-LTR_AG in
CC   the genome.
XX
SQ   Sequence 108 BP; 37 A; 20 C; 18 G; 33 T; 0 other;
     tgttgaagag caagccttga gtaaaatagt aggctatgat tattaatgta agattctaga        60
     aatatagtct tgttccaacc agcaaccttt acacagctac tctctaca                    108
//
ID   Copia5-NVi_I repbase;    DNA;    INV; 4159 BP.
XX
AC   AAZX01004556;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia5-NVi;
KW   Copia5-NVi_I; Copia5-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4159
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1131-1131 (2007).
XX
DR   Genome; AAZX01004556; Positions    5415    1257.
XX
CC   Positions [1572-2072] - Integrase core
CC   'TAAAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3107..4135
FT                 /product="Copia5-NVi_I_1p"
FT                 /translation="MKRIGFKQADADNCVYIGLHENDTVYIALYVDDGLLL
FT                 AKNQKTLDRLIAILQEEFKITSGALKFFVGMEISRTEDGIFIKQTNYIKRI
FT                 LEKFHMEGANPIRTPADQHSKLVSPLEPQTNFPYREVVGSLLFLAMVSRPD
FT                 IAYAVSVTSRFLDNHDQTHWRAVKRILRYLKGSENIGLFYPSNSESDTLVG
FT                 YSDADYAADLDTRRSTTDYVFKLYDACVSWSSKRQATVSLSTTEAEFIAAS
FT                 EATKEIIWLRKLLSNIEHGCAQPTILHIDNQSAIKLSRNPEFHRRSKHIDV
FT                 RYHFICEKVKNNEVNTKYVNTHDQCTDMFTKPLCCEKLNKLLNKINVTNRI
FT                 "
FT   CDS           join(135..1325,1329..3062)
FT                 /product="Copia5-NVi_I_2p"
FT                 /translation="MAETSDLKNISKFNGQNYQLWKFQMRAAFIAHDLLEI
FT                 VEGTDKKPASTTTNAADVFKWSKKDAKAMFFLSDAMEYSQLEYLITCSTSN
FT                 NYRMSPGDSIPQHIARVENLASQLKDIDQAISDTMIMAKILSTLPAKYNAF
FT                 VSAWESVVADDQTLHNLRERLLREESRMTTMDNLDNALATLSLPKEKNQGH
FT                 RPQSGNNANSNQRKKSITCDFCKKPNHIARFCFARKRSKNSNVNSNGNDQN
FT                 NSRKQMDGDSANLTAFTVTKNDSNSESASANVAENPAWLSAIGDRDSWILD
FT                 SGASRHISCCREWFRELRMTGQDEFVYLGDETRLKVEGYGDVYIKRFINNA
FT                 WLDGVIRNVLYIPSLARNLLSSGVCTFDGHSIVFDREQANIFSRENTLIAR
FT                 GIKRNNLIKMLFIPESRLDANYTSVAPLSLWHERMGHINCNRIKHMLNNDV
FT                 VSGVLVSDKKDFFCESCPPGKQFKLPFHKTEKNANVAPGEIIHSDLCGPMQ
FT                 TPSVSGAKFFVLFKDEATGFRTVYFRRHKNDRYDRLKCFVNLIKNQFGKDM
FT                 KILRSDNGLEYKNKRVTEFLESRGIKHQTSALYTPEQNGRAEREMRTIVEC
FT                 ARTMLLSRNFPTRLWAEAVNTAVYILNRSLGAQSNDATPFELWSKQKPDLS
FT                 HLRIFGCDAYAHVPNALRKKWDEKSKKLIMVGYDADSANYRLFDPRTGRVT
FT                 ISRNVSFNENLHERKSRNGEEAYIDFDNEVCETLQNDDRIPRAKPHNENDE
FT                 NRADDAAADEPALGEADVHEQLDDDDPGAANADAIAANDRNPRIAEIARPN
FT                 LRPRDKLLRPQRYRADTVVCESPTTYKDALNRADSDLWKIAIQNELEAHAR
FT                 NRTWDIVELPKGRKAIGYKWTFKIKHAIDESEQQCKARLCAKGYSQEAGTD
FT                 YDEFFSPVARFESIRVLLAIAARENLCSMQFDVSTAYLNSELNELIYMRVP
FT                 DGLNVSDKNLVLKLNKAISD"
XX
SQ   Sequence 4159 BP; 1282 A; 1006 C; 948 G; 923 T; 0 other;
     ggttatgggc ccaggaaggt gtggcttttt ttccagtttg tccatcacca acaacgctag        60
     tgaaagtttt ttttcttttt tcgtgtttcg tacgttttgt gttcactcgc ttttgagaaa       120
     tatcgagaaa caagatggcg gaaacttcag acctcaagaa tatctcgaaa tttaacggtc       180
     agaactacca gctctggaag ttccaaatga gagccgcctt tattgcgcac gaccttctgg       240
     aaattgtgga aggaacagac aagaaaccag cgagcacgac caccaacgca gccgatgtat       300
     ttaagtggtc taaaaaggac gcgaaagcca tgttttttct gtctgacgcc atggagtaca       360
     gccaacttga atacctcatc acgtgctcaa cttctaacaa ctaccgcatg tcacccggag       420
     actcgatacc gcaacacatc gcccgagtgg aaaaccttgc cagccaacta aaagatatcg       480
     accaggcgat atcagacacc atgataatgg cgaagatcct tagtacgctg ccggccaagt       540
     acaacgcctt cgtctcagca tgggagagcg tagtggccga tgaccagacg ctgcacaacc       600
     taagggaacg actgctacgg gaggagagcc gcatgacgac catggacaac ttggacaacg       660
     ctctcgccac cctcagccta cccaaggaga agaaccaagg tcatcgtcca caaagcggta       720
     acaatgcgaa ttcaaatcaa cgtaaaaaat cgattacgtg tgacttttgc aaaaaaccga       780
     atcatattgc gcgtttttgt tttgccagaa agcgatcaaa gaattccaac gtaaactcga       840
     acggaaatga tcaaaacaat agccggaaac aaatggacgg agattcggcg aatctcaccg       900
     cgttcacagt tactaagaac gactcgaact cggagagtgc gagcgcgaac gtcgcagaga       960
     accctgcttg gctcagcgca ataggggaca gagattcgtg gatcttagac agcggcgcgt      1020
     cgcgtcacat ctcgtgctgc cgcgaatggt tccgagaact tagaatgacc ggccaggacg      1080
     agtttgttta cctcggcgac gagacgagat taaaagtcga aggttacgga gacgtataca      1140
     taaagagatt tataaacaac gcgtggctcg acggtgtaat tcgcaacgtt ttatacatcc      1200
     catcgctcgc gaggaaccta ctatcctcgg gcgtttgtac cttcgacgga cactcgatcg      1260
     tttttgaccg cgaacaagct aacatttttt cgagagaaaa tactttgatc gctcgaggca      1320
     ttaagtagcg aaacaatttg ataaaaatgt tgtttatacc tgaatcaaga ctagacgcta      1380
     attacacttc tgttgctccc ctgagcctgt ggcacgaacg tatgggccac attaattgta      1440
     atcgcatcaa acacatgtta aacaacgacg tagtttcggg cgtgcttgta agcgacaaaa      1500
     aggatttttt ctgcgaaagc tgtccacccg gcaagcagtt caaactgcct ttccacaaga      1560
     ccgaaaaaaa cgcgaacgtc gcgcccggag aaataataca ttccgatctc tgtggtccca      1620
     tgcaaacacc ttcagtcagc ggtgcgaagt tttttgtatt gtttaaggac gaagcgaccg      1680
     gctttcgcac cgtatatttt cgcaggcata aaaatgacag gtacgatagg ttgaagtgtt      1740
     tcgttaatct gataaaaaat caattcggga aagacatgaa aattttacga tcggataacg      1800
     gccttgagta taaaaataag cgcgtgacag aattcttaga atccagaggc atcaagcacc      1860
     agacgtctgc tctgtacact cccgaacaga acggtcgcgc ggaacgtgag atgcgcacca      1920
     tagtcgagtg cgcgcggacg atgttgttgt cgcggaattt tccgacgcgt ctgtgggccg      1980
     aagccgtcaa tacggctgta tatatcctaa accgatcgtt gggggcgcag tcgaacgacg      2040
     ctacgccttt cgaactctgg tctaaacaaa aacccgacct gtctcatttg cgcatttttg      2100
     gatgcgatgc ttacgctcac gtacccaacg ctttacggaa gaaatgggac gaaaagtcaa      2160
     aaaaattaat catggtaggt tacgacgcgg actcggcgaa ctataggcta ttcgatcctc      2220
     gaaccggacg cgtaacgatc tcaagaaacg tctcctttaa cgaaaaccta catgaacgca      2280
     agagccggaa cggcgaggaa gcttacatcg atttcgacaa tgaggtttgc gaaaccctgc      2340
     aaaacgacga tcgaatacct cgcgcgaaac cccacaatga gaacgacgag aaccgagcag      2400
     atgatgcagc cgcggatgaa ccggcattag gcgaagcgga cgtacatgaa cagctcgacg      2460
     acgacgaccc cggtgccgca aacgccgacg ctatcgcggc gaacgatcga aatccgcgca      2520
     tcgccgaaat cgcacgtcca aatctacgtc cgcgagataa attgctccga ccacagcgct      2580
     atcgcgccga caccgtcgtc tgcgagtccc cgaccacata taaagacgcg ttgaaccgcg      2640
     ccgactccga cctttggaaa atagccatcc aaaacgagct agaagcacac gccagaaatc      2700
     gcacttggga tatagtcgaa ttaccaaaag gacgcaaggc gataggttat aaatggacgt      2760
     tcaaaataaa acacgcgatc gatgaaagtg aacagcaatg caaagcgcga ttatgtgcga      2820
     aaggatattc ccaagaagct ggaacagact acgacgaatt cttttctccc gtcgcacgtt      2880
     tcgaatcaat ccgggtactt ttagcaatag ccgctcgaga aaatttatgc tctatgcaat      2940
     ttgacgtaag cacggcttac ctcaacagcg aacttaacga gcttatctac atgcgtgttc      3000
     ccgacggatt gaacgtcagc gacaaaaatc tcgttctaaa actgaacaag gccatttcgg      3060
     actgaagcag tcaggccgtt gttggaacga aaaattcgac cgatttatga aacgtatagg      3120
     ttttaaacaa gccgacgcag acaactgcgt atacataggc ttacacgaaa atgatactgt      3180
     atacatcgct ctatacgtgg acgacggtct attattagcc aaaaatcaaa aaacattgga      3240
     caggttaatc gcgattcttc aagaggaatt taaaataact tctggcgctt taaaattctt      3300
     cgtcggtatg gaaatttcgc gtactgagga cggtatcttt ataaagcaaa cgaactatat      3360
     aaagcgaatc ttagaaaaat tccatatgga aggtgcgaat cctatcagaa cgccagctga      3420
     tcagcattcg aaacttgtta gcccgttaga acctcagacg aattttccgt atcgtgaagt      3480
     cgtaggatcg ctattattct tggccatggt ttcccgacca gacatcgcgt acgccgtaag      3540
     cgtgactagc cgcttcttag ataaccacga ccaaacccac tggcgcgctg tcaaacgtat      3600
     tttgcgctac ctaaagggaa gcgaaaacat cggacttttc tacccttcca acagcgaatc      3660
     cgatacacta gtcggatact ccgacgctga ttacgcagcg gatttggaca cgaggcgatc      3720
     taccaccgac tacgtattta aattgtacga tgcatgcgta tcatggtctt cgaagcgtca      3780
     agctaccgtc agtctaagca caacggaagc cgaattcata gcggccagcg aggcgaccaa      3840
     ggaaatcata tggttaagaa aactattgtc aaatatcgaa catggatgtg cgcaaccgac      3900
     aattttacac attgataatc aaagcgcgat aaagctatct cgaaatccag aattccaccg      3960
     cagatcaaag cacatcgatg tacgatatca ttttatatgc gagaaagtaa aaaacaacga      4020
     agtgaacaca aaatatgtaa acacgcacga tcaatgtacc gatatgttca cgaaaccatt      4080
     atgttgcgaa aaactgaata agttacttaa caaaataaat gtaacgaacc gcatttaaac      4140
     gacgctcaag cagtggggg                                                   4159
//
ID   Copia5-NVi_LTR repbase;    DNA;    INV; 253 BP.
XX
AC   AAZX01004556;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia5-NVi;
KW   Copia5-NVi_I; Copia5-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-253
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1132-1132 (2007).
XX
DR   Genome; AAZX01004556; Positions    1256    1004.
XX
SQ   Sequence 253 BP; 61 A; 69 C; 55 G; 68 T; 0 other;
     tgttaaaata aagattcttg atgcgtcgca tattactcgc gtatactacc tatgtataaa        60
     accacagagt gggggcaggt agcgacgaag cgatctggag cgccacctcg cagcgaacgc       120
     gttgccgccg cccgctttgg ggcctcagac atttttgtac cgtcacgcag tgagcatctc       180
     ctttcacgac acgaataaat ctattgactt tcaactgtgc ttgatccttc ttttttaacc       240
     tgctccgcca aca                                                          253
//
ID   Copia6-NVi_I repbase;    DNA;    INV; 3936 BP.
XX
AC   AAZX01000798;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia6-NVi;
KW   Copia6-NVi_I; Copia6-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3936
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1133-1133 (2007).
XX
DR   Genome; AAZX01000798; Positions   15533   19468.
XX
CC   Positions [1569-2099] - Integrase core
CC   'GCATT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..2750
FT                 /product="Copia6-NVi_I_1p"
FT                 /translation="MIQNIEKLSGADNYHDWAVLMKAYLEHEDVFDTIVAP
FT                 TGEQISTDATKRRLARTKIILAVERVVLSQIQNLESPKDIWDTLKNAYAIE
FT                 SLYRKTSLIIEYTRIRLEDCNSTEEYIDKIITIHQKLKNIGKDLGDDFAAC
FT                 IMLEGLPSEYEPMRMALESLPEKEITTENVKTKLLMQVKWRQGANKSNEVG
FT                 LYAYNQNKQGGGYSRGPNYRRNFGARPMNSAGIRCYRCNKYGHMSTDCSLP
FT                 DKRNHPNRYQANHVTEENEDENNEDDDQIAAFAFVGLAAGNGASTDDWIVN
FT                 SGASRHICNNSSIFAEIHKSDLTYITVANRSKVQVRGEGGVYLRLENGITV
FT                 KLLNVLQVPDITVNLISVGQTNLKGYSTVFSSSGCKIMNQRGDLVLYAKLQ
FT                 NGIYKVPRFSNPQDIDKQENNRRDRSVALVASAQPQDMELWHRRLAHLNYN
FT                 SLNQLRDGAALGIHMKPGKAEQCEICALEKICKQPFKLNEKRANAALEIVH
FT                 TDLCHVTPKSNGNATYILTFLDDYSRKAFVYFLKKKDEVYKSFVHFNNFVE
FT                 NETGNKIKSLQSDNGTECVNSKMNQLMDQSGIKRRLSIPGTPQQNGRAERL
FT                 NRTLLDKARCMILDAGVAKSFWAEAVAVAAYVHNRTPKRCTKYKTPQELWT
FT                 GKIPDLSHIKVFGCKAIVHVPESKRGKMDAKGTRCIFIGYCPTRKAYRLWD
FT                 PSAKGVVISRDVTFYEHGSLKPVVPDNINGTKPVFLIADDPDDNSEEEAYS
FT                 VDQLKQVDTSMEESTENENPCHQPTGHEGLPAIPDQPHALDQDAPPDGQPG
FT                 VKSQTEGIRRSSRVRRMPTKYTEYYLSRKRNSEAAHLADASDIPDKKSNKT
FT                 IKRDIKPDLWLGVVNN"
XX
SQ   Sequence 3936 BP; 1258 A; 880 C; 953 G; 845 T; 0 other;
     ggttatgggc tcagggtccc acagtgagaa acaagtgtac cgtatttctt tagtggaacc        60
     attattggta gatcagcttt aaaccttcga ggagtctcag gtgcaacgac gaaatggctg       120
     ttaataaagg gaaaaattag gccatgattc agaacatcga aaagctctcc ggagccgaca       180
     actaccacga ttgggcagtt ttaatgaagg cctacttgga gcacgaggac gttttcgata       240
     ccatagtagc cccaacgggt gaacaaataa gtacagatgc aacgaaacga agattagcaa       300
     gaaccaaaat aattttagcg gttgagcgcg tagtactaag ccaaatacaa aacctagaat       360
     cccctaaaga tatttgggac acattgaaaa atgcgtacgc aattgagagt ctgtaccgca       420
     aaaccagctt aataatagaa tatacaagaa tccgtctaga ggactgcaat tccacagaag       480
     aatacattga caagataatt accatacatc aaaaactgaa gaacatcggc aaggatctcg       540
     gagatgactt cgccgcatgt attatgctcg agggcctacc gtccgaatat gaaccgatgc       600
     gcatggcgct cgaaagcttg cccgagaaag aaatcacaac cgaaaacgtc aaaactaaac       660
     tattgatgca agtaaaatgg agacaaggag caaacaagtc caacgaggta ggattatacg       720
     cgtacaacca aaacaaacaa ggcggcggtt attctagagg acccaactat aggcgaaact       780
     ttggagcgag gccaatgaac tcagcaggta tacgctgtta ccgatgtaat aaatatggac       840
     acatgtccac tgattgctct ctaccagaca agcgaaacca cccaaaccgc taccaagcaa       900
     atcacgtcac cgaggaaaac gaggatgaaa acaacgagga cgacgaccaa atcgcggctt       960
     tcgccttcgt cgggcttgca gcaggaaatg gagcaagcac ggacgattgg atcgtcaact      1020
     ccggtgcttc acggcacata tgcaataata gttcgatctt cgccgaaatc cataaatccg      1080
     atttgacgta cattaccgtg gcaaatcgca gtaaagtgca agtcagagga gagggaggcg      1140
     tataccttcg gctggagaac ggaataacgg ttaaattgct gaatgtcttg caggttcctg      1200
     acattacagt aaacctcata tcggtcggtc aaacgaattt aaaaggatat agtactgttt      1260
     tctcatcatc aggctgcaaa attatgaacc aaaggggaga cttagtgctg tatgccaagc      1320
     tgcagaacgg tatatacaag gtaccgcgat tttcaaatcc tcaagacatc gacaaacaag      1380
     aaaataaccg acgcgaccgg tcggtagctc tcgtggcttc agcgcagcca caagatatgg      1440
     agctgtggca tagaagactc gcccacttaa attacaacag cctaaatcaa ttacgcgatg      1500
     gagctgcgct cggaatacac atgaagcccg gcaaagcgga gcagtgcgag atatgcgcct      1560
     tggaaaaaat ttgtaaacaa cccttcaagt tgaacgagaa acgagcgaac gctgcactgg      1620
     aaatagttca cactgatttg tgccatgtca cccccaagtc gaacggcaat gcgacgtaca      1680
     tactaacttt tctcgacgac tacagtcgaa aagcgttcgt ttacttccta aagaagaagg      1740
     acgaagttta caaaagtttc gtccacttca ataatttcgt cgaaaatgaa accggaaaca      1800
     agattaaatc gttgcagagc gacaacggaa ccgagtgtgt aaactcaaag atgaaccagc      1860
     ttatggacca gtccggcatc aaacggcgac tcagtatccc gggcactccg caacaaaatg      1920
     gcagggccga aagactaaac agaaccctgt tggacaaggc aagatgcatg attttggacg      1980
     ctggtgtcgc aaaatctttt tgggctgagg ctgttgcggt ggcagcgtat gtccacaaca      2040
     gaacaccaaa acgctgcacg aagtacaaaa ctcctcaaga attatggaca ggtaaaatac      2100
     cagatttatc acatataaaa gtttttggct gcaaagccat agtccacgtt ccagaatcca      2160
     agagaggcaa gatggacgct aagggcacga ggtgtatatt catcggatac tgcccaaccc      2220
     ggaaagcata cagactgtgg gacccgtcag caaaaggagt ggtcataagc agggacgtca      2280
     ccttctacga gcacggcagc ctcaaacccg tagttccaga caacatcaac ggaaccaagc      2340
     cagtcttctt gatcgccgat gacccggatg ataacagtga ggaggaagcg tattctgttg      2400
     accagctaaa gcaggtcgat acgagtatgg aggagagtac ggaaaacgag aacccatgcc      2460
     atcagccgac tgggcatgag ggacttcccg cgataccgga ccaaccccat gcgctcgacc      2520
     aggacgcgcc gcccgatggt cagccagggg tcaaatcgca aactgagggc attagaaggt      2580
     cgtcgagggt cagacgaatg cccaccaaat acactgaata ctacctgagc agaaaaagaa      2640
     attccgaagc tgctcatttg gcggacgcca gcgacatccc cgataagaaa tcgaacaaga      2700
     caatcaaacg agatataaag ccagatttgt ggctaggggt tgtaaacaat tgaatggagt      2760
     agatgtcacg gagacatatt ctccggttgt aagatataca accctaatat tactgttctc      2820
     ttatgctgtt aggaaaggcc tggagatcga acacctggac gtcgagacgg cgtttttgca      2880
     gggagaactc gaggagcagg tgtacataca gcagccggaa ggatacgtcg acccgcatca      2940
     cccggacttg gtctgcagat taaagaaagc aatctatggc ctcaaacaaa gtggacgcgt      3000
     ctggaacgta aaactgggta gcatcctaaa cgaaatgggc ctccaacgct gtgaatatga      3060
     cccatgctta taccatctgc aaaggagcgg tgcggagctc aagatggctg tatttgtcga      3120
     cgacttgctg gtgttcgcaa gttccagagc cctcatccag gaggtcactg cggagctgcg      3180
     gaagcgcata acgctaagag atctcggcga catcacaaga tgcttcaacg tcaacgttac      3240
     cagggataga gagagagagg aattctatct atggaccaac gggatagcat agtgcgcatc      3300
     ctcagggact acggaatgga gggttgtaac ccatgtagca ttcccatgga cgcaggctcc      3360
     tcattggtgg cagacgcatc cccgaagtca aagtctgaat tggatgagct gagtaagatt      3420
     ccttaccaaa atgtaattgg atctctcatg tacctcctcc agatgaccag accggacctg      3480
     gcctatacgg tgagcactat gagccgcttt aacacctgtt acggaatgga gcactggaag      3540
     gtgctgaaga aaacaatata aatagtgtcg acaacaagga gatacagatc acccacgtat      3600
     caactccgta tatggtggct gattcgctaa caaagccagt gccggctcct aagatgaaca      3660
     actttaaatt aagtgtggga ctgtataatt aaaaatttat tgagattttt cctttgcgtg      3720
     tttttataac gataacgacg atacctatgt atagcttgtt tttaaatgtg aactttaagt      3780
     gagaaatgtt gtttgatgca gtgtaagtca ttagatcaaa aggtatagaa caatgttgtc      3840
     tgcgaagtct tttgtatcgc gaacttaaga gtgtacatta gttgttcttg ccttttgtat      3900
     tgttcaatgt aataagcgaa ttcaaacatg ggggcg                                3936
//
ID   Copia6-NVi_LTR repbase;    DNA;    INV; 226 BP.
XX
AC   AAZX01000798;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia6-NVi;
KW   Copia6-NVi_I; Copia6-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-226
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1134-1134 (2007).
XX
DR   Genome; AAZX01000798; Positions   15307   15532.
XX
SQ   Sequence 226 BP; 66 A; 53 C; 37 G; 70 T; 0 other;
     tgttggaaat gagtgttcga attcgctaca taaccgctac taccaccact actacttccg        60
     tgtataggag agtacaggga tactgtataa ataggtctct cgaggcgtac gagagtcatt       120
     cgccgttcac accccgctta aataaaacgt taagtatatt atttaagcta ttgatatttc       180
     attatcccat ctacctttcc acatacactc gatatcattt gctaca                      226
//
ID   Copia7-NVi_I repbase;    DNA;    INV; 4228 BP.
XX
AC   AAZX01002465;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia7-NVi;
KW   Copia7-NVi_I; Copia7-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4228
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1112-1112 (2007).
XX
DR   Genome; AAZX01002465; Positions   22806   18579.
XX
CC   Positions [1630-2160] - Integrase core
CC   'GTTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1108..3870
FT                 /product="Copia7-NVi_I_1p"
FT                 /translation="MCSSRLNMTNIKHSRIKSVTAANQTKVSVQGEGNVAL
FT                 QYHGPTGERRVLLENVLLVPDLTVNLLSVSIITRRGGKVIFAGPTCQIYNS
FT                 KGIPILQGQRTTNNVYKITFQPRSAQTDTLRSDFALSVSIPTDIQLWHRRM
FT                 GHLNEAYLKQLREAAIGVNFKNDQLYRCQTCIAGKLIQKPFKINNKRASAI
FT                 LELVHSDVCQMEELSIGRAKYFITFTDDYSRKTFVYFLKQKDEVPDITMKF
FT                 IKYVEKQTDRKLKRFRTDNGGEYVNAKLKTALAELGVKHETSIAYQPQQNG
FT                 RAERVNRVLLEKARCMLSEANLPYKFWAEAISTACYLSNRSPKRCLGGVIP
FT                 EELWTGSRANLSHFRVFGCEARAYISSHQRKKLDPTSRPAIFIGYSEDQKG
FT                 YRLWSAEDKKVFVTSNVEFLEKELESSIKPAYFPVEFSDTMESNVDKVLAQ
FT                 EPINKENFRRNEESVTNENLRRNVEPVNKESFRSNEEPVNKGNFRRNEEPV
FT                 NKENFRRNEKPVNKENFRTTEEPANQEDKIRNKTPKKREIVKEAPANDDPM
FT                 ITRKRKIQSNQDEVIKKSAKLTDRSTDLQPPLSNQPRPQTRSVTKLDQPRD
FT                 LEDSEDELITPSCKSQRRKRKPKHLDDYVVYSIVSEFGEPRTVEEALSGPE
FT                 SHHWRQAMDEEYKSIIKNNTWVLCNLPHGESVIGSKWIFKKKPAADGTTKC
FT                 KARLVAQGFSQLKGIHYDETYAPVVRYTSLRLLFVYAVKRGLNVYHLDVET
FT                 AFLHGDMEETVYLEQPQGYVQKNQKHKVCKLNKSIYGLKQGSRNWNRKLDS
FT                 TLKELKLIQSYQVTCIYSYFNKKKCIIVALFVDDLMVFTDSIDFLDILKTG
FT                 LQKICTLKDLDPMKKCLGIRVNVDNSKGVIELDQTEYIESLLAQYGMSDCR
FT                 STGTPLDLKGDYSSSQS"
XX
SQ   Sequence 4228 BP; 1439 A; 845 C; 952 G; 992 T; 0 other;
     ggttatgggc ccaggcgcaa cgatgaagat ctgaaaagct ctagtcgcaa tataagtgcg        60
     cattggcagg acagtgatac gcaaattttg gagcaccgac atcttgagag agagccgtaa       120
     catggcgagc cgtacgagca gcggtgtaat tttatctatc gataaattgg tcggcaggac       180
     aaactaccga tcctgggctg tagctatgag agcatattta gaagtagaag atttgtggaa       240
     cacgattgag gctccacaag gtggtcaact atcaacagat gcgaagaaac tgcagaaggc       300
     gcgaggcaga atcatactga cagttgaacc ggatatctac gcataccttg aagacgccaa       360
     atcaccgaag gatgcttggg aggcactcgc caaaaccttc gatgatccgg gagcgaacag       420
     caaggtcaat ctatttatgc agctttcaac gaccaggtat gaaaactgta agtctatgga       480
     ggactatgta gcgcgcataa tagggacttc gcaaaagctc aatgctatcg gttcgaaaat       540
     accgacagat ttgataggag ctttgatgtt ggccggatta ccggagtcat acaaaccgtt       600
     aaggatggct cttactaatt cgggtcaaaa tttaaccgca gattttgtga aaacaaaact       660
     tttagaagaa gctcaatgct ccaataacgg ccacgaaatt caaaacgaag cattccatgc       720
     gcaagtgcac tcgacgcact tcgcgccgca gagtagtgcc aacagagggc gcaacgggta       780
     tcataaacgc ttaggacgtc ggcgtaattc gaacgtgaga tgctataact gtaataagtt       840
     cggtcatata gcaagtaagt gtactgctcc gataaaaaaa aacaaaatgc atgcacagcc       900
     gcagcagacg aggagagcga ggacgaggac gtcgtgtgtg cgctcttagc ctcgatacga       960
     tcaggcgata ctcacgcggc gaacgtcggc accgctcttg tcgactcgaa gaatacaatc      1020
     tcggctggca ccgcactcct tgcagtgaat cagtcaaaac acacacaggc agacgagtgg      1080
     attttggact ccggagcttc gaagcatatg tgctccagcc gactcaatat gacaaacata      1140
     aagcattcca gaataaagag tgtaacagct gctaatcaaa ctaaagtgtc tgttcaagga      1200
     gaaggaaatg tcgctttgca gtaccacggt ccaactggag aacgtcgggt gttgttggag      1260
     aatgtgctgc tggtacccga cctcacagtt aatttgctgt cagtaagtat catcactaga      1320
     agaggtggaa aggtgatttt tgctggcccc acatgccaga tatacaacag caaaggtatc      1380
     ccaatactgc agggacagcg aaccacgaat aacgtctaca agataacctt tcagccgaga      1440
     tcagctcaga ctgatacact caggtccgac tttgcactca gcgtttccat tcctactgat      1500
     attcagctat ggcataggag aatgggtcac ctaaacgagg cctatttgaa gcagctgcga      1560
     gaggctgcta ttggtgtcaa tttcaagaat gatcaactat acagatgtca aacctgcata      1620
     gctgggaagc tgatacagaa gccattcaag atcaacaaca agcgtgcctc agccattctt      1680
     gaactggttc atagtgatgt atgtcagatg gaagaattat caattggaag agctaagtat      1740
     tttataacct tcacagatga ttacagccga aaaaccttcg tctatttcct gaaacagaag      1800
     gatgaagtac cggacatcac tatgaaattc atcaagtatg ttgaaaaaca aactgaccgc      1860
     aagttgaaaa gattcaggac agataatgga ggtgagtacg tcaatgccaa gctgaagact      1920
     gcattagctg aacttggtgt gaagcatgaa acctctattg cctaccaacc acagcagaac      1980
     ggtagagcag aaagggtaaa ccgtgttctt ctcgagaagg caagatgtat gctgagtgag      2040
     gccaatctac cttacaagtt ttgggctgaa gctatttcaa ctgcctgtta tctatccaac      2100
     agaagtccaa aaaggtgttt gggtggagtt attccagaag agctctggac cggatccaga      2160
     gccaacttgt cacacttcag agtttttggt tgtgaagcac gagcatacat ttctagtcac      2220
     cagagaaaga aacttgatcc cacttcaaga ccagcaatct tcataggtta cagtgaagat      2280
     cagaaaggct atcggctatg gagtgcagag gacaaaaaag tgtttgtgac tagcaatgtg      2340
     gaattcctcg agaaggagtt ggaatcgtca atcaaaccag catattttcc tgtagaattc      2400
     tcagatacta tggagtcaaa cgtagataaa gtacttgctc aagaacctat aaataaagaa      2460
     aattttagaa gaaacgaaga atctgtaact aatgaaaatc taagaagaaa cgtagaacct      2520
     gtaaataaag aaagttttag aagtaatgaa gaacctgtaa ataaaggaaa ttttagaaga      2580
     aatgaagaac ctgtaaataa agaaaatttt agaagaaacg aaaaacctgt aaataaagaa      2640
     aattttagaa ctactgaaga acctgcaaat caagaagata agattagaaa taagacacct      2700
     aagaaaaggg aaattgtaaa agaagcacct gcaaacgatg atccaatgat aacaagaaaa      2760
     agaaaaatcc aatctaacca agatgaagtg ataaagaaat cagccaaact gacagataga      2820
     tcaaccgacc tgcaaccacc attgagtaac caacctcgtc cacaaaccag atcagtcact      2880
     aaactcgacc aaccaaggga tctggaagat tcagaagatg aactgatcac acccagttgc      2940
     aaaagtcaac gtagaaaacg taaacctaaa cacctagacg actacgtggt ttattctata      3000
     gtcagtgagt ttggtgaacc gagaacagtc gaggaggctt tatctggacc agagtctcat      3060
     cactggagac aagccatgga cgaggagtac aaatctatca tcaaaaacaa cacatgggta      3120
     ctgtgcaacc ttccacatgg tgagtcagtg attgggagta aatggatttt caagaagaag      3180
     ccagctgcag atggaacaac taaatgtaaa gcaaggttag ttgctcaagg tttttcgcaa      3240
     ttaaagggta ttcattacga tgagacatat gccccggtag tcaggtacac atcactcagg      3300
     cttttatttg tttacgctgt gaagagagga ctcaacgtat accaccttga tgttgagaca      3360
     gcatttctcc atggtgacat ggaagagact gtgtacttag aacaacctca aggttacgtt      3420
     cagaaaaacc agaaacataa agtctgcaag ctgaacaaat ccatttatgg actaaagcaa      3480
     ggcagtcgca attggaatcg caagctggac tccacgttga aggaattaaa actgatccaa      3540
     tcataccaag tcacttgtat atatagttat tttaataaga aaaaatgtat tattgtagct      3600
     ctctttgtgg atgacttgat ggtcttcacg gatagcatcg actttctgga catcctaaaa      3660
     actggcctac agaagatatg cacactgaaa gaccttgacc ccatgaaaaa atgcttgggt      3720
     attcgagtca acgtggacaa cagcaagggc gttattgaac ttgaccagac cgaatacatc      3780
     gagtcattac ttgcccagta tggaatgtca gactgcagat ctactggtac cccgctggac      3840
     cttaaaggtg actacagcag ctctcaatca tgaggctcag cattcaatcc tcatcaggaa      3900
     ttcgaagttc agtgtcagta ctaagcacat caataggcga ctccactttg ttagcgaaag      3960
     cattgatagt ggtgagatca gtgtaagctt cattccatct acgcacatga ttattgacgc      4020
     cctaaccaag gctatcagtc aaaggaagtt gagggacttc gtcgagaaca tcggtctcaa      4080
     gaatgaagag agaagacagt attaataaat aaaaaataat atattttgat actttgtatt      4140
     tagagatttt aattgtcgac gaattttgta atgtaaattt tatctaagaa aatatcaatg      4200
     ttctgttaaa taattaattg agggggca                                         4228
//
ID   Copia7-NVi_LTR repbase;    DNA;    INV; 287 BP.
XX
AC   AAZX01002465;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia7-NVi;
KW   Copia7-NVi_I; Copia7-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-287
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1113-1113 (2007).
XX
DR   Genome; AAZX01002465; Positions   18578   18292.
XX
SQ   Sequence 287 BP; 92 A; 62 C; 39 G; 94 T; 0 other;
     tgttgtgata ttagagtcaa ttaatcattt aaatggtcgc gcgcttatac acttataata        60
     gactaacgta gtctctcgta tcatactaga atcttctagg caacttataa agtaccagaa       120
     actagctgac tcgttcactt gagttcacaa cgcgatcaag acaagtacag ttttgctctc       180
     gccctctcat ctcaactgtt ataaataata aatctattat acatatttag aagataaact       240
     actggctcgt ttatttcact cgccctccga aatacctaat tatatca                     287
//
ID   Copia8-NVi_I repbase;    DNA;    INV; 6024 BP.
XX
AC   AAZX01003863;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia8-NVi;
KW   Copia8-NVi_I; Copia8-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6024
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1114-1114 (2007).
XX
DR   Genome; AAZX01003863; Positions   15271    9248.
XX
CC   Positions [3359-3874] - Integrase core
CC   'GTAGG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           670..3387
FT                 /product="Copia8-NVi_I_1p"
FT                 /translation="MLINSTGVDQEEFRRIILREWARLEANEAYGDKYHRD
FT                 TVTLLRKKDGSSYFLRSELQLRRFDEVLSETERAVIDRVWPAVKKQLVFQL
FT                 RYSVDSITRSEFMWMMLEQNKMFLTGIEMLVKGLTMPGFGQQLPYFDQSPP
FT                 AKPLSVEPRGPEPPKSTVTVQPKKPAALVEETEPVEPRNAFLDIRKKPRIK
FT                 GIENFPKAASTPFGRPQTVRCTELIDMSINMREPVKRSAERRREPSEGGEL
FT                 SNNSEDEAQETRESNKSDTPVEISMFDPYRASGSQQMQPPPDQEHRSKFPR
FT                 VSVRQNNCCQFVEQSNNVPLNVVNELVENKIKVLLLERDKEIEKSSNDRSF
FT                 LNLSEQLKNEFIGRENLGSRTYKLTVKTNFEMFEDYLKSELRNKKLHYILD
FT                 ESVSMNSTVNESKRLDDEFKVREIIINRIDAIYYNKIVNLTDPKLILRKLK
FT                 DVKRYETRTTRITARRDLMTIKYLPSKETASDFYDIFQEKVRIFENIPDAG
FT                 KLPENELKDYFLQAVAEAVPEITTADQLFKEATSTEMTCERLKNYLLQVGS
FT                 TKSRKMPSQPPVRAFVHSSQGTGRLICRGCGMEGHTKTNCPNEGLRQCYYC
FT                 LKLGTHLAHECNKRKADAEKGQATATSYGPPSKRGRWTGQGSRSTASRGRT
FT                 SKMAASGRASVAPANRGARGARGASTRGRGRGRGGPQRGVGYSRLQQGTSL
FT                 QAIAEEYQGNKANCGNKELLEFIADSDATEHLSRSKLYFDKFDSRAITKVD
FT                 CANKDSTFRTDDSGSTEVVTEDNNTFTLNNILYSKNLSYNLLSLRRFVDRG
FT                 LEIYLNNKIIDIYNPELDKSILTREYKKPFWIIKLVLSKDTATKTNPKIMY
FT                 NTRSKKNSVKINDSDVNKSVSGRSSVDKTREPNDVETDFLQTSSNRKHTQN
FT                 RD"
FT   CDS           4442..5362
FT                 /product="Copia8-NVi_I_2p"
FT                 /translation="MINLGPNIIDSRWVFKRKTNEQGETKFKGRLVIRGFK
FT                 DKNVYDLRETYAPVSRMSLIRAFFSIANKLNYTIRQLDVETAFLYGDLSED
FT                 IYMEVLEGVQITSDTRKRFLWKLNKSLYGLKISPKKWNDKFSSVMTKLGFT
FT                 SNDIDPYLYIKHSGVDTILVVLYVDDILLASSNNEVLNKLSQNLIAEFKIK
FT                 DLGTPKEFLGIKIERDQTKRVIKLSLYETIFMLSRFGFESCRPLSTPMRQL
FT                 EVVSHDRKEREETENTLAESGKEQIPNKLYREAVGSLLYLANATRPDISYA
FT                 VNVLSRHQVNPTIQE"
XX
SQ   Sequence 6024 BP; 2074 A; 1117 C; 1369 G; 1464 T; 0 other;
     ggttatgggc cgggtgagcc acgcttccac tacgcaaaaa taaagtgcgt gacacgcgtc        60
     tagagacgct ggagtgtttt tagctcacga gagcaagtga aatgtcaggt ggcaaaaggc       120
     tgtgtatacg ctctttacaa cgataatcgg aaatagaaaa tgcttcgaag caagagattt       180
     taaatcctca tatcagtaac cgttgagtag catgtttaat agtgttcttt aaaaacctgt       240
     gttgcaaaat aaatacggac tgcagttcat gaaaaatcgc attttgtgag ggccccacat       300
     aatgcgtatc cggctttcgc ttaaattcaa gcaagctgta ataaatcaat tcaaaagtca       360
     acacagtagc tagaacaaga aagatagaca agagtcaggt gaaagtaaga ttcagaaaag       420
     aacatcaacc aaagaaacag gttaatctta caatatgcca agaccgcgcg attagaatcg       480
     cctcacttga ttgggagagc aagagcatgc gacaagagtc gctcctcaag agaggaaagt       540
     caaaagatat ttgctgatag aaactctgag tcaaagtcgt aattgaacaa ttatttttat       600
     tgttttaact atctaataca tggatatctg gaataatatt ttgtatatac atacaaacac       660
     aacacttata tgctaattaa ctcaacaggt gttgatcaag aggaattccg tcgcatcatc       720
     ctccgggaat gggcgaggtt ggaagccaac gaggcgtatg gtgacaaata ccaccgagac       780
     accgtcaccc tgctaaggaa gaaggacggc tcctcgtatt ttttaaggag cgaactccag       840
     ctgcgcaggt tcgacgaggt cctgtcggaa accgagagag cggtcattga ccgcgtgtgg       900
     ccggctgtaa agaagcaact cgtgttccag ctgaggtact cggtggactc catcaccagg       960
     agtgagttca tgtggatgat gctggaacaa aacaagatgt tcttaaccgg gattgagatg      1020
     ctggtgaagg gtctcaccat gccaggcttt ggacagcagc tgccctactt cgatcaaagc      1080
     cctcctgcga aaccactgtc agttgagccc cgtggtccgg agccacccaa atctacggtg      1140
     actgtccagc caaagaagcc tgcagctctg gtcgaagaaa ccgagccagt ggagcccagg      1200
     aatgcctttc tagacatcag gaaaaagccc cgaatcaagg gcatcgaaaa cttcccgaag      1260
     gcagcctcga ccccgttcgg caggccgcag acggtgcggt gcacagaact gattgatatg      1320
     agtatcaata tgcgcgagcc tgtcaaaagg tcggcagaaa gaaggcggga gccttccgag      1380
     ggcggagaac tttccaacaa ctcggaggac gaggctcagg agactcggga gtcgaacaag      1440
     agtgacacgc cggtggaaat ttccatgttc gacccctaca gggcttctgg gtcgcagcag      1500
     atgcagccgc cacctgatca agaacacagg tcaaaatttc cccgggtatc ggtaagacaa      1560
     aataattgtt gtcagtttgt agaacagtcc aataacgttc ccttgaacgt agttaacgaa      1620
     ctagtagaaa acaagataaa ggtcttgctt ctcgaaagag ataaagagat tgagaaatca      1680
     tcgaatgata gaagtttttt gaatttgtcg gaacaattga aaaatgaatt tataggcaga      1740
     gaaaatctag gttctagaac ttataaactc acggtaaaaa ctaacttcga aatgttcgaa      1800
     gactacttga agtccgaact aagaaacaag aaactgcact acattctgga tgagagtgtg      1860
     agtatgaact ctactgtaaa tgagtcaaaa agattggatg atgagtttaa agttagggaa      1920
     attataatca atagaataga cgcaatttat tacaacaaga ttgttaattt gactgatccg      1980
     aaactgattc ttagaaagct gaaggatgta aaaagatacg aaactcgaac aactagaatc      2040
     acagctagac gagacttgat gacaatcaaa tatttacctt cgaaagagac tgcgtctgat      2100
     ttctacgata tattccagga gaaagtcaga atatttgaaa atattccaga cgcgggaaaa      2160
     cttccggaaa acgagttaaa agattatttc cttcaagcag ttgctgaagc agttccggaa      2220
     attaccactg cagatcaatt gtttaaagaa gctacgtcta cggaaatgac atgcgagaga      2280
     ctaaaaaatt atttattgca ggttggatcc accaagagtc ggaaaatgcc ctcccaaccg      2340
     ccagttagag cgttcgtgca ctcaagtcaa ggcactggcc ggctgatctg cagaggttgt      2400
     ggaatggagg gtcacaccaa gaccaactgt cccaacgaag gcttgaggca gtgttattac      2460
     tgcctcaaac tcggtactca tcttgcacac gagtgcaaca agcgtaaagc agatgcggag      2520
     aagggacagg caactgcgac cagctacggc ccaccctcaa agagagggag gtggacaggc      2580
     caagggagcc ggtctactgc gagcagaggc cggacatcta agatggcagc gtctggccga      2640
     gcctcagtgg ctcctgccaa ccgtggagcg agaggcgcca gaggcgcatc aacccgaggc      2700
     agaggccgtg gacgtggcgg accacagagg ggtgtaggct actctaggct tcagcagggg      2760
     acatcgctcc aagccattgc cgaggaatac caaggtaaca aagcgaactg cggtaataaa      2820
     gaattgctag aatttatagc ggactcagat gcgaccgagc atttgagcag atcaaagttg      2880
     tacttcgaca aatttgactc tcgagcgatt actaaggtag attgtgcgaa caaagatagc      2940
     acttttagga ctgacgatag tgggtcaact gaagttgtta cagaggataa taataccttt      3000
     accttaaaca acattttgta ttcaaaaaat ctgtcataca atctgttatc gttgagacgt      3060
     ttcgtagatc ggggacttga gatttacttg aataacaaaa tcattgatat ttataatcca      3120
     gaactagata aaagcatttt gacaagagag tacaagaaac cattttggat tattaaattg      3180
     gttttaagta aagatacagc aactaaaact aatcctaaaa tcatgtataa cacaagaagt      3240
     aaaaagaact ctgtcaaaat aaacgactcc gatgtaaaca aatcagtatc gggcaggtcc      3300
     agtgtagaca agactaggga acctaatgat gtggaaacag attttttaca aacatctagt      3360
     aacagaaaac acacacaaaa cagagactag tcaggtcgat aaaatagatg tgaataaaaa      3420
     tcacaataaa cctagagagg aaatttcaga agccatgtta tggcatatca gactaggaca      3480
     tgtatctaag aaatatttac ttgtgttagc caagcaaaat gataaattaa taaatattga      3540
     aaatataaac aaagataaga ccatacaaga tgaaaaattc tattatctaa gatgcgacag      3600
     ggggacggag tttgtttgtc aggctactag agaggtctta ggaaaatacg gtgcagaatt      3660
     gcaactggct tgtccagata caccacaata caacggtgtt gctgaaaggt ttaatcgaac      3720
     gctagagaat aaagtaaaag tcatgatgct ggactctggc ttaccgcatt cgtattggga      3780
     tctagctatt aaaacagctg tctatattta taataggaca tcacacaagt cagtagacat      3840
     ggtggcacct ttgagtaaaa tcttatcaaa tcagtctgaa tgcgtgagtc aggtcaagcg      3900
     ttttatgcgc agcatatttt aagatagccc gcagcacaga aaccaagttt tcgcctcaag      3960
     caaagcaggg atttttaatt ggatatctga gtacaggaaa catgatactt gtaccgagcg      4020
     aaaataaatt atatgattgt aaacatgtta ggtttgtaga aaatttaacg tataaagact      4080
     ttcaaagtaa aagtatagaa aacgatcaat cagaattaaa atttgaaaag gaatcagact      4140
     ccgagactga gaaagagaga cagtagttga aataaaatcg aaaagaggta gaccgaaaaa      4200
     gaatcccgta gcaatgttct ttttaactga agatcctgag atacaagaat ttgattttga      4260
     tagagaattt agcgatctta aatatcatgc tcttctagct aaaatcttag gtgacccata      4320
     aacgtttaaa caggctgtaa actctccaga gagagaacac tggttgggag caattaaatc      4380
     agacctagat tctattaaag aaaaacaagt atacactgta gtagaaagat ctaaagtatc      4440
     tatgattaac ttaggaccaa atataatcga ctccagatgg gtctttaagc gaaaaacaaa      4500
     tgaacagggc gaaactaaat tcaaaggtcg attagttatt cgaggtttta aagataaaaa      4560
     tgtgtatgac ttacgtgaaa catacgctcc agtatccagg atgtcactga taagagcttt      4620
     cttctcgata gcgaataaat taaattacac gattagacaa ctcgatgttg aaactgcgtt      4680
     cttgtacggt gacctttcag aggacattta tatggaagtt ctggagggag tacagattac      4740
     cagtgatacc agaaaaagat ttctatggaa actaaacaag tcactttatg gattaaagat      4800
     aagtcccaag aagtggaatg ataaattttc aagcgtaatg actaagctag gctttacatc      4860
     aaatgatata gatccgtact tatacattaa acactcaggt gtagatacaa tccttgttgt      4920
     attgtatgtt gacgacatac tgttagctag ttcaaacaac gaagtcttga acaagttgag      4980
     ccaaaattta attgctgaat ttaaaatcaa agatctcggt acccccaaag aatttttagg      5040
     gatcaaaata gaaagagatc aaaccaagcg agttatcaag ttgagcctat atgagactat      5100
     attcatgttg agtagatttg gctttgaaag ctgcaggccg cttagtacac caatgaggca      5160
     acttgaggtt gttagccatg atagaaaaga gagggaggaa actgagaata cactggctga      5220
     atcaggaaaa gagcaaattc ctaataaact gtacagagaa gctgtcggat ctctacttta      5280
     tttggcaaac gcaacgaggc cagacatttc gtatgcggta aatgtactta gtaggcatca      5340
     ggtgaaccct actatacagg aatagaatat ggttaagaga gtatttcaat acttgtcagg      5400
     aacacgaaac tatgagttaa cattcaatcg aaccgatgag gggctgataa cttactctga      5460
     cgctagctta gcagactgta aaagttctct gaccacgtgt ggctacgtta ttcgactgtt      5520
     cggtaacaca gtggcgtgga gaacgcacaa gcagcagagc gttgctttgt ccacttgtca      5580
     atcagagtat gtcgccatga gcgaaacctg tcaggagtgt atgtccttac ataactcagt      5640
     agcaattatg ctagagcgaa acttatatcc actgacattg tgctgcgaca acatggcagc      5700
     catttcttgc gctaaagtaa atggtggtaa tcggttaaga cacatggtcg aaagaaggga      5760
     acattatgta aaagaatgtg taaataagaa ttacattaag atagaatgga tcaaatcaaa      5820
     gagtcaatta gctgacatat ttacaaaggc tttacccaag caattacatt atgaactatt      5880
     gaaaatcatt tttaacatat aattaataga ttttgtgttc attttagagt ttcctgaaga      5940
     gaccgatggc gaggcagaag ttgcagagcc atccataaca gaggagccct ggaactgagt      6000
     gggaggtcct caagtgagag ggag                                             6024
//
ID   Copia8-NVi_LTR repbase;    DNA;    INV; 209 BP.
XX
AC   AAZX01003863;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia8-NVi;
KW   Copia8-NVi_I; Copia8-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-209
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1115-1115 (2007).
XX
DR   Genome; AAZX01003863; Positions    9247    9039.
XX
SQ   Sequence 209 BP; 45 A; 62 C; 43 G; 59 T; 0 other;
     tgttgaagct agagatgacc acttggaact ctcccacgtt ctactcatgc gcaagctcgc        60
     cgagctgcgc cgctcgactc ggcgcgtgag ttcgtcgctt agccctccga gagagcgctc       120
     gtactttccc gaagtttaat aaattacttt tttcacgaga ccttttgcat tttgattatt       180
     tacgagactc accctacctg atcccaaca                                         209
//
ID   Copia9-NVi_I repbase;    DNA;    INV; 4591 BP.
XX
AC   AAZX01000081;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia9-NVi;
KW   Copia9-NVi_I; Copia9-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4591
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1116-1116 (2007).
XX
DR   Genome; AAZX01000081; Positions    9244    4654.
XX
CC   Positions [1983-2510] - Integrase core
CC   'ATTTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..1716
FT                 /product="Copia9-NVi_I_1p"
FT                 /translation="MAEIICTAVQKLNSVNYSTWSYKIQLMLMKDKVWDVI
FT                 KDEPPAAADTTYAAWTARDETAQVTIGLLVEDSQLRLIKNAKTAREQWNTL
FT                 KEYHQKSTLSGRIHLQRRFYHTVLQEGGDMVEHIATLSEYVDKLFGMGHSV
FT                 DDSTLVGVLLCSIPESYGTLIMALEGRPDKDLTPDFVKGKLIDEYMRRKDS
FT                 REARSSASDEVAMNTTYSEKKGTQPSKLKCFFCKKKGHAKSENAKTAREQW
FT                 NTLKEYHQKSTLSGRIHLQRRLYHTVLQEGGDMVEHIATLSEYVDKLFGMG
FT                 HSVDDSTLVGVLLCSIPESYGTLIMALEGRPDKDLTPDFVKGKLIDEYMRR
FT                 KDSREARSSASDEVAMNTTYSEKKGTQSSKLKCFFCKKKGHAKSECRKYKT
FT                 WQEKHTEKANKVTSVIIENDEDYGCYLARVEACLGAKAEIENWIVDSGATS
FT                 HMAQTRTFFEELDAGSKGYVRLADDENRVQVEGVGTAAIKCADASEKISTI
FT                 KVREALYVPGLGANLLSVSKLTKDGYKRFSKRTSAR"
FT   CDS           2061..3851
FT                 /product="Copia9-NVi_I_2p"
FT                 /translation="MQTLTPGGKRYFMTIIDDYSRYTHLYIMRHKNEAAGL
FT                 IQEYVQMAKTQFHKVPKIIRSDRGREYVNTELQSFLKNQGILIQYTAPYSP
FT                 QQNGVAERKNRSLLDMSRCMLFDAELDIKYWGEAVHTANNLQNRLPSRATT
FT                 KTPYELWYSEKLHLADLQIFGSPAYMHIPKEQRRKLDHKGKKYFFVGYSDE
FT                 SKAYRLLDTETDKIKISRDVEFVDKRGSKEKSHPSQEECEISILHNKQNEN
FT                 IDQPDDNSSIASSSSEDYASIEESSLESSSSDVKESSVQDDNVPEAEAPPV
FT                 TRRSERSNRGVPPDRYMAASNLTRLESEPRSVKEALSRPDAHHWKKAMEEE
FT                 IFSHIKNGTWVIVQRPDGRDIIKCKWVFKIKYNANGEIERYKARLVACGYS
FT                 QIYGEDYNEVFAPVVKQTTFRTLLTVAGHKGLQIKHFDVKTAFLNGELKEN
FT                 IYMKPPDGFITQDGQEMVCRLRKGIYGLKQAAKVWNDCLNDCLTAFGFKQS
FT                 QADLCLYTKDDNGDKTYLVVYVDDFLIAAKDSMKIDEVAEFLSTKFQLKDL
FT                 GNLSFYLGIEIRRDEDGIFYMKQEKYIEKILHRFGCKMQKSPIFLSIKAI"
XX
SQ   Sequence 4591 BP; 1537 A; 1004 C; 1094 G; 956 T; 0 other;
     ggttatggac ccagccctag tgaataaatt ttttggagta tacaaataca atatcaagtg        60
     tgtgacacaa cgtttgactg aaagtgatta aaagtgaagt gagtttttat aaagttcaga       120
     atggcagaaa tcatctgtac cgctgttcaa aaactcaata gcgtaaacta ttcaacatgg       180
     agctataaaa tacagctcat gttgatgaag gacaaagtgt gggacgtcat caaagacgag       240
     ccacctgctg cagctgacac cacatacgcc gcatggaccg ctagagatga aacggctcaa       300
     gtaaccatcg gcttgctggt agaggacagc caactaaggc tgataaagaa tgccaaaaca       360
     gcacgcgagc agtggaacac gctgaaagaa taccaccaga agtcaaccct ctcaggtaga       420
     atacatctac aacgacgttt ctaccataca gttctgcaag agggtggtga tatggtcgag       480
     catatagcta cactatcaga gtacgtagat aaactttttg gcatgggtca ttctgtcgac       540
     gacagtacgc tcgtaggagt cttgctatgc agtatccccg aatcttacgg cactctcatc       600
     atggctttag agggtaggcc ggacaaggac cttacgccag acttcgtcaa aggaaaatta       660
     atcgacgaat acatgcggcg caaggactcg cgggaagcaa ggagcagtgc atcggacgaa       720
     gtagccatga acactacgta tagtgaaaag aaaggtacgc aacctagcaa gttaaagtgt       780
     tttttctgca aaaagaaagg ccacgcgaaa tcagagaatg ccaaaacagc acgcgagcag       840
     tggaacacgc tgaaagaata ccaccagaag tcaaccctct caggtagaat acatctacaa       900
     cgacgtctct accatacagt tctgcaagag ggtggtgata tggtcgagca tatagctaca       960
     ctatcagagt acgtagataa actttttggc atgggtcatt ctgtcgacga cagcacgctc      1020
     gtaggagtct tgctatgcag tatccccgaa tcttacggca ctctcatcat ggctttagag      1080
     ggtaggccgg acaaggacct tacgccagac ttcgtcaaag gaaaattaat cgacgaatac      1140
     atgcggcgca aggactcgcg ggaagcaagg agcagtgcat cggacgaagt agccatgaac      1200
     actacgtata gtgaaaagaa aggtacgcaa tctagcaagt taaagtgttt tttctgcaaa      1260
     aagaaaggcc acgcgaaatc agaatgcaga aaatataaaa catggcaaga aaaacacacc      1320
     gaaaaagcca acaaagtgac tagtgtgata atcgaaaacg acgaagatta tggctgttat      1380
     ttagcacgag tagaagcctg tctcggtgcg aaagcagaaa tcgagaactg gatagtcgat      1440
     tccggagcga caagccatat ggctcaaacg cggacttttt tcgaggagct ggacgcaggc      1500
     agcaaagggt acgtacgcct cgcggatgat gagaaccgcg ttcaggtaga aggcgtaggg      1560
     acagcagcca taaagtgcgc agatgccagc gaaaaaatct cgacaataaa agtgcgcgaa      1620
     gcgctctacg ttcccggatt aggcgcaaat cttctgtccg tcagtaaact cacgaaggac      1680
     ggatataaac gattttcgaa gagaacatct gcaagataat aaaaaatggg acagttctgg      1740
     caatagcaaa ggtagcctca gacctttacg agctgagagc caaaaaatcc tttgcagcga      1800
     aagcagtagc cataaagaaa agctgtgccg aggattgtca ccacgtgtgg cacagacgct      1860
     tcgggcaccg ctttacaacg gcaattaagg agctggagga aaaacaactg gccactggga      1920
     ttaaaatatc ggactgtgga aggaacatcg tgtgccagga ctgcattaag ggtaaattgg      1980
     cccgtaaacc ttttccaaag gaatcgagga cccaaacaca cgcagccctc gatctcgtac      2040
     acacagatgt ttgcggccca atgcagacgc tcactccagg gggcaaaagg tattttatga      2100
     ccatcatcga cgactactcc aggtatacac atctgtatat aatgcgccac aagaacgagg      2160
     ccgctggatt gattcaggag tacgtgcaga tggcaaaaac gcagtttcac aaagtgccta      2220
     aaataatcag atcagatcga ggaagggagt atgtgaatac ggaactccag tcattcctca      2280
     agaatcaagg catcctcata cagtatacag caccttattc acctcaacaa aacggcgtcg      2340
     ccgaacgcaa gaaccgatcc ttgctcgata tgtcgagatg catgcttttc gatgcggaac      2400
     tcgacataaa gtactgggga gaagcagttc acacggcaaa taatttgcaa aaccggctgc      2460
     ccagcagagc aacaacaaaa actccatacg agttgtggta ctcggagaag cttcatctag      2520
     cggatctgca aatcttcggc agtcccgcct atatgcacat tcccaaggaa cagcgtagaa      2580
     agctggatca taaaggtaaa aaatattttt ttgtcggtta ttccgatgaa tcgaaagcct      2640
     atcggctctt ggatacagaa accgacaaaa tcaagataag ccgagacgta gaattcgtgg      2700
     ataaaagagg cagcaaagaa aaatcacatc catctcaaga ggaatgtgaa atttcaatac      2760
     tacacaacaa gcagaacgag aacattgatc aacccgacga taatagttca attgcgtcat      2820
     catcaagcga agattatgcc agcatagaag agagcagcct cgaaagcagc tcgtcagatg      2880
     tgaaagaaag cagcgttcaa gatgacaacg tacctgaagc agaagcgcct ccggtcacca      2940
     ggcgctccga aaggtccaat aggggcgtgc cgccggacag gtatatggct gcatccaatc      3000
     tgacgagatt agagtctgag ccaagaagtg taaaagaggc attatcaaga ccagatgcac      3060
     accactggaa aaaagctatg gaagaggaaa ttttttcgca cattaaaaat ggcacatggg      3120
     ttatcgttca acgaccagat ggaagagaca tcataaaatg taagtgggta tttaaaatta      3180
     aatacaatgc caacggagaa atagaaaggt ataaggcccg gctcgtggca tgcggttact      3240
     cgcaaatata cggagaggac tacaacgaag tttttgcacc cgtcgtgaag cagacgacct      3300
     ttcgcacgtt gttaacagta gcgggtcata aaggtctgca aatcaagcac ttcgatgtga      3360
     aaactgcatt ccttaacggc gagcttaagg agaacatcta tatgaagcca cccgacggtt      3420
     tcatcactca agacggacaa gaaatggttt gccgcttgag gaagggaatc tacggtctaa      3480
     agcaagcggc aaaagtatgg aacgactgct taaatgactg tttaacagca tttggattta      3540
     agcaaagcca agccgattta tgcctgtata caaaggacga caacggcgac aagacctacc      3600
     tcgtagtgta cgtcgatgat tttcttatcg cagccaaaga ctcaatgaaa atcgacgaag      3660
     ttgcggaatt tctgagcaca aaatttcagc tcaaagatct cggtaacctc agcttttatt      3720
     tgggaatcga gataagaaga gacgaagacg gcatttttta tatgaagcaa gaaaagtaca      3780
     tcgagaagat cctacacaga ttcggctgca agatgcaaaa gtctccaata ttcctctcga      3840
     tcaaggccat atgaagacaa gaggcgatca atcgccaatg cccgaaagca agcgctacca      3900
     gcagcttatc ggcgcattat tatatctcgc tgttaataca cggccggaca tatctgcaag      3960
     tgtgactatt ttaagtcaat acaacaagga gcccggcaca gctgattgga atgaagcgaa      4020
     aagggtcgcc cgctacctgc acggaacaaa aggcgccgag ctacgactcg gaaaaagggg      4080
     cggcgcacct acactcatcg gctatgcaga cgcagactat gcagagaccc gacttgacag      4140
     aaaatctttt agcggctata catttcaata ttgcggatca acaattagtt ggtcttgccg      4200
     aaagcaatcc tgtgtgtcac agtcatcgac ggaagccgaa tatattgccc tcgcggaagc      4260
     gactcaagaa ggaatatgga tccgtcgctt acttgaagat tttgaagaac gaccacaaga      4320
     aaaaaccgtg atctatgagg acaatcaaag ctatcttaag ctcttagatc acaaacgatt      4380
     taatcatcgc acgaagcata tcgatacaaa atatcacttc gtcaaagata ttaaggagaa      4440
     gcagctgatg gattaccaat attgccccac agcagaaatg atcgccgaca tgctaactaa      4500
     gccattagga aaaattaaat taagaggctt cgcagaaatg tcaggcatga taaattttta      4560
     gatcaccgat gtgtgcatcg ttgaggaagg g                                     4591
//
ID   Copia9-NVi_LTR repbase;    DNA;    INV; 387 BP.
XX
AC   AAZX01000081;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; Copia9-NVi;
KW   Copia9-NVi_I; Copia9-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-387
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1117-1117 (2007).
XX
DR   Genome; AAZX01000081; Positions    4653    4267.
XX
SQ   Sequence 387 BP; 110 A; 101 C; 65 G; 111 T; 0 other;
     tgttgagaaa tatactttct accaatgata cgcacacaca gccctcagct gatcgagacg        60
     agcagagagg gtagctacct ggcttgggtt ttattgcacc cgagcggcca ccgacgctcc       120
     ccagcagaga cgcgcacaga gggcctcact tccgaacgga ccgccgacca gcgtacacat       180
     cagcccccgc aactatgtct actctacagt tttaccttgt tctctcttta tattagattc       240
     agtgtacaac gaacatttta aattagtgtt acatatattg tatttacttc atttacctct       300
     agtgctgttt aaaactctgt ataatctcgt atatttattt gaataaagtc taataaataa       360
     atactaccac ttcacctaac tccaaca                                           387
//
ID   COPIA_DM_I  repbase;    DNA;    INV; 4594 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   03-AUG-2018 (Rel. 23.08, Last updated, Version 4)
XX
DE   Drosophila melanogaster transposable element copia.
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; internal portion; Repetitive element;
KW   Copia element; DMCOPIA; COPIA_DM; COPIA_DM_LTR; COPIA_DM_I.
XX
NM   COPIA_DM; COPIA_DM_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4594
RA   Emori Y., Shiba T., Kanaya S., Inouye S., Yuki S. and Saigo K.;
RT   "The nucleotide sequences of copia and copia-related RNA in
RT   Drosophila virus-like particles.";
RL   Nature 315, 773-776 (1985).
XX
FH   Key           Location/Qualifiers
FT   CDS           156..4382
FT                 /product="COPIA_DM_I_1p"
FT                 /translation="MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVD
FT                 GLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVY
FT                 ERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMD
FT                 KISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDT
FT                 SKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHI
FT                 KKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLD
FT                 SGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEI
FT                 TLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGML
FT                 NNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLL
FT                 NNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVT
FT                 LDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYL
FT                 YIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKART
FT                 MVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKH
FT                 LRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARD
FT                 VVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKEC
FT                 DNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKY
FT                 FLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEI
FT                 INRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKS
FT                 SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYK
FT                 ARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTA
FT                 FLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALK
FT                 ECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYL
FT                 MEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVS
FT                 TPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYS
FT                 SKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEI
FT                 DRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLK
FT                 FLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ
FT                 NNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE"
XX
SQ   Sequence 4594 BP; 1674 A; 643 C; 903 G; 1374 T; 0 other;
     ggttatgggc ccagtccatg cctaataaac aattaaattg tgaattaaag attgtgaaaa        60
     taaattgtga aatagcattt tttcacattc ttgtgaaata gctttttttt tcacattctt       120
     gtgaaattat ttccttctca gaatttgagt gaaaaatgga caaggctaaa cgtaatatta       180
     agccgtttga tggcgagaag tacgcgattt ggaaatttag aattagggct cttttagccg       240
     agcaagatgt gcttaaagta gttgatggtt taatgcctaa cgaggtagat gactcctgga       300
     aaaaggcaga gcgttgtgca aaaagtacaa taatagagta cctaagcgac tcgtttttaa       360
     atttcgcaac aagcgacatt acggcgcgtc agattcttga gaatttggac gccgtttatg       420
     aacgaaaaag tttggcgtcg caactggcgc tgcgaaaacg tttgctttct ctgaagctat       480
     cgagtgagat gtcactatta agccattttc atatttttga cgaacttata agtgaattgt       540
     tggcagctgg tgcaaaaata gaagagatgg ataaaatttc tcatctactg atcacattgc       600
     cttcgtgtta cgatggaatt attacagcga tagagacatt atctgaagaa aatttgacat       660
     tggcgtttgt gaaaaataga ttgctggatc aagaaattaa aattaaaaat gaccacaacg       720
     atacaagcaa gaaagttatg aacgcgatcg tgcacaacaa taataacact tataaaaata       780
     atttgtttaa aaatcgggta actaaaccaa agaaaatatt caagggaaat tcaaagtata       840
     aagtcaagtg tcaccactgt ggcagagaag gccacattaa aaaagattgt ttccattata       900
     aaagaatatt aaataataaa aataaagaaa atgaaaaaca agttcaaact gcaacatcac       960
     acggcattgc gtttatggta aaagaagtga ataatacttc agtgatggac aactgcgggt      1020
     ttgtccttga ttctggtgct agtgaccatc ttataaatga tgagtcgctg tataccgaca      1080
     gtgtggaggt tgtgcctcca cttaagattg cagtggccaa gcaaggcgaa tttatttatg      1140
     ccactaagcg tggtattgtc cgactacgga atgaccatga gattacactg gaggatgtac      1200
     tcttttgtaa ggaagctgct ggtaatttga tgtccgtaaa gcgtctccaa gaggcaggaa      1260
     tgtcgatcga atttgacaaa agcggtgtaa ccatttcgaa aaatgggtta atggttgtca      1320
     aaaattcagg tatgttaaac aatgtacctg tgatcaattt tcaagcatat tctataaatg      1380
     ctaagcataa aaataatttt cgtttatggc atgagaggtt tggccatata agcgatggca      1440
     aattattaga aataaaacga aagaatatgt ttagtgatca aagtcttcta aacaacttag      1500
     agttatcatg tgaaatttgt gaaccctgtt taaatggtaa acaggcaaga cttcctttta      1560
     aacaattgaa agataagacc catattaaaa gaccactttt tgtagtacac tcagatgtct      1620
     gtgggcctat tactccagtt actttagatg ataaaaatta ttttgtgatc tttgttgatc      1680
     agtttacaca ttattgtgta acttatttaa ttaaatataa atctgatgtg tttagcatgt      1740
     ttcaagattt tgtagccaag agtgaagctc attttaattt aaaggttgtg tacttataca      1800
     ttgacaatgg tagagaatac ttgtcaaatg agatgagaca attttgtgtt aagaaaggaa      1860
     tttcttatca cttaacagtg ccacatacac ctcagttaaa tggtgtttct gagagaatga      1920
     taagaaccat tacggaaaaa gctcgaacca tggttagtgg tgcaaagcta gataaaagct      1980
     tttggggcga agcagtatta actgctactt atttaatcaa cagaattcct agtagagcac      2040
     ttgttgatag ttcaaagacc ccatatgaga tgtggcacaa taagaagcca tacttaaaac      2100
     atttgagagt gtttggtgca actgtttatg tgcatattaa aaacaaacaa ggaaagtttg      2160
     atgataaatc atttaaaagt atttttgtgg gctatgaacc caatggtttt aagttgtggg      2220
     atgctgtaaa tgaaaaattt attgtcgcaa gagatgttgt tgtcgatgaa accaatatgg      2280
     ttaattctag agctgttaaa tttgaaacag tgttcctgaa agatagtaag gaaagtgaaa      2340
     ataaaaattt tccgaatgac agtaggaaaa taatacaaac agaattcccg aatgagagta      2400
     aggaatgcga caacatacaa ttcctgaaag atagtaagga aagtgaaaat aaaaattttc      2460
     cgaatgacag taggaaaata atacaaacag aattcccgaa tgagagtaag gaatgcgaca      2520
     acatacaatt cctgaaagat agtaaggaaa gtaataaata ttttctgaat gagagtaaga      2580
     aaagaaagcg agatgatcac ctgaatgaaa gtaagggatc aggcaacccg aatgagagta      2640
     gggaaagtga aacagcagag cacttaaaag aaattggaat tgataatcca actaaaaatg      2700
     atggcataga aattattaat agaagaagtg agagattaaa gactaagcct cagatatcct      2760
     ataatgaaga ggataatagt ctaaataaag ttgttctaaa tgctcacact atatttaacg      2820
     atgtcccaaa ttcatttgat gaaattcaat atagggatga taaatcttct tgggaagaag      2880
     ccatcaatac agagttaaat gctcataaaa ttaataatac ttggacaatt acaaaaaggc      2940
     ctgaaaacaa aaatattgta gatagcagat gggtattttc tgttaaatat aatgaacttg      3000
     gaaatccaat tagatacaaa gctagattgg ttgcacgagg attcactcaa aaataccaaa      3060
     tagactatga agagacattt gctcctgtag ctagaatttc aagtttccga tttatattgt      3120
     cattagtaat acagtataac ttgaaagtcc atcaaatgga tgtaaaaaca gctttcttaa      3180
     atggcacgtt aaaagaggaa atttatatga gacttcctca aggtatatcg tgtaatagtg      3240
     acaatgtgtg taaattgaat aaggcaattt acggactcaa gcaagcggct agatgctggt      3300
     ttgaagtatt tgagcaagca ttgaaagagt gtgagtttgt aaactcttca gttgatcgct      3360
     gtatatatat tttagacaaa ggtaacatca atgaaaacat atatgtatta ttatatgtag      3420
     atgatgtggt tatagctaca ggagatatga caagaatgaa taacttcaaa aggtatttaa      3480
     tggaaaagtt taggatgact gacctaaatg aaataaaaca ttttattgga attaggatag      3540
     agatgcagga agataaaatc tatttaagcc aatctgcata tgttaaaaaa attttaagta      3600
     aatttaacat ggaaaattgt aatgcagtta gtactccttt acctagtaaa ataaattatg      3660
     aattacttaa ttcagatgaa gactgcaata ccccatgccg tagcctcata ggatgtttaa      3720
     tgtacataat gctttgtaca cgcccagatt taactactgc agtaaatatc ttgagcagat      3780
     atagtagcaa aaataactcc gaattatggc agaacttaaa aagagttctt agatatttga      3840
     agggcactat cgatatgaaa ttgattttta aaaagaactt ggcatttgaa aataaaatta      3900
     ttggttatgt ggattctgat tgggctggta gtgaaattga tagaaaaagt acaacagggt      3960
     atttattcaa aatgtttgat tttaatctca tttgttggaa tacaaagaga cagaactcag      4020
     tagcagcctc atcaactgaa gctgagtata tggccctatt tgaagccgtg agagaagctc      4080
     tatggcttaa atttttatta actagtatta acattaaact agaaaacccc attaaaattt      4140
     acgaagacaa tcaaggctgt attagcatag caaacaaccc ctcatgtcat aaacgagcta      4200
     aacatattga tattaaatat cattttgcca gagagcaagt tcagaataat gtgatttgtc      4260
     ttgagtatat tcctacagag aatcaactgg ctgacatatt tacaaaaccg ttgcctgctg      4320
     cgagatttgt ggagttacga gacaaattgg gtttgctgca agacgaccaa tcgaatgctg      4380
     aatgaaattt ttatatatat ttttcaaatt taaattcctg taaacatatt ttgttacaat      4440
     gatctgatcg ggtttttctg ggttttcccc gtatcctcgc agcaaatgct ggatcagtta      4500
     acacttccca gaatgcacac cacccacatt tgatagttac taatgaatat tattgttatg      4560
     tttttaatta tagacgttat ttttgagggg gcgt                                  4594
//
ID   COPIA_DM_LTR repbase;    DNA;    INV; 276 BP.
XX
AC   X02599;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 12.07, Last updated, Version 2)
XX
DE   Drosophila melanogaster transposable element copia.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; COPIA_DM;
KW   COPIA_DM_I; COPIA_DM_LTR; Copia element; DMCOPIA;
KW   Long terminal repeat; Repetitive element.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-276
RA   Emori Y., Shiba T., Kanaya S., Inouye S., Yuki S. and Saigo K.;
RT   "The nucleotide sequences of copia and copia-related RNA in
RT   Drosophila virus-like particles.";
RL   Nature 315, 773-776 (1985).
XX
DR   GenBank; X02599; Positions      21     296.
XX
SQ   Sequence 276 BP; 100 A; 42 C; 34 G; 100 T; 0 other;
     tgttggaata tactattcaa cctacaaaaa taacgttaaa caacactact ttatatttga        60
     tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc actcttttta       120
     ttccttcttt ccttcttgta cgttttttgc tgtgagtagg tcgtggtgct ggtgttgcag       180
     ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta tttatttatt       240
     tattaagaaa ggaaatataa attataaatt acaaca                                 276
//
ID   CR1-100_AAe repbase;    DNA;    INV; 4815 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-100_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4815
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1188-1188 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 23 sequences with >95%
CC   identity. Closely related to T1 and Q.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..1287
FT                 /product="CR1-100_AAe_1p"
FT                 /translation="MTAACDRCAKSIKRGEEVIICMGFCDHVVHLRCANID
FT                 KNIIKAINDSSNLNWMCDECVKLMKLTRFRNAISSVGNTINELTRNQQAAH
FT                 DELKRELMKHSEQIAQLSNQFNSVTPLHPASINRRASKRRRMENDPQVTKP
FT                 LLGGTKATDSVSIATVPQPTALFWIYLSRLHPSVKPDAVEKLTKESLQCNS
FT                 AKAIPLIKQGTDVNSLNFISFKVGIDPEYRTAALDPSSWPSGILFREFENT
FT                 NERNYWMPEPSTPSILVTSDSEVTPHQAAIDTADC"
FT   CDS           1330..4704
FT                 /product="CR1-100_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="METSSQIGAVQPIAAIVHRSRRGPAVESVEGVLQPAF
FT                 PGKYSNSIEQTLPDRLPASSTLTMSSVPIASYSYRSSCSSTSNPGRSTLST
FT                 MEAPGPPSSVAPSSVVEETLQQCRSCHPSRPGPESSVGEGVFQATCDGKYL
FT                 SNNGVSCPDDSSIPRAATNARNDASAPTNILMYYQNVGGINSSLAEYQLAF
FT                 SDGCYDIYALTETWLNGNTSTRQLFDDSYYVYRQDRSSSNSDKCSGGGVLL
FT                 AVRSNYKSHVIDPPGSSMVEQVWIAISTVDAMLYLCVVYIPPDRVNDEIXI
FT                 EKHLDSLNWVVSQMGPRDKLVILGDYNLSAIFWQRNFHGYLFPVATRSSIS
FT                 LASRKLLDAYSTARLRQMNDVENENNRILDLCFFIEEIQNDCVVMQAPSPL
FT                 VKMCRHHPPVLTKIAIRPQLRFRDTTEGVNYDFSKADFSGMNNFLANVDWD
FT                 EALHDSEANLAASTLSGILLYAIDQFVPVKLRRDTPKPAWSNTGLNHLKRM
FT                 KQSALRRHSKYRTDSTRATYMEVNAEYKKLNNRLYNSFQNRLQNRLKTNPK
FT                 SFWRYVNEQRKEVGLPSTMTDGLNEFNSTMDIANLFRTQFSNVFINEHLHP
FT                 QDIANATTNVPRLPASVEQFTITDNMVISAGKELKSSTGFGPDGIPSLVLK
FT                 RCMNSLASPLAKLFNTSLSTNVFPDCWKHSYVFPVFKKGCRQSVSNYRGIA
FT                 ALSSTSKLFELIVLRKLTQSYSHYISPNQHGFMSRRSTTTNLTCFTSFVIR
FT                 QIESGHQVDAIHTDLSAAFDKMNHQIAIAKFDKLGLNDNMLLWLKSYLTGR
FT                 SMSVKIGEHVSMPFSVWSGVPQGSHLGPFLFLLYMNDVNFILDCLKLSYAD
FT                 DIKLYCTINKPQDSEFLQHQLEIFAEWCNINRMSLNVSKCSVISFGRRRTL
FT                 LQFNYGLAGVELQRVTTVKDLGVLLDTKLTFKDHVAYIVSKASAQLGFLFR
FT                 FSKKFTDVYCLKALYCSIVRPILEYSSVVWSPFYRNEIQRIEAVQRKFVRF
FT                 ALRRLRWRDPLNLPSYESRCKLIDLDLLEPRRNVAKACFISDLLQGSIDSP
FT                 LLLSSLDINTRRRNLRFHPFLNIPSARTNYGLHEPMRSMSRVFNSCYHVFN
FT                 FNVSRGTNKCNFRQFLC"
XX
SQ   Sequence 4815 BP; 1321 A; 1172 C; 991 G; 1330 T; 1 other;
     gaatcactgg catcactgct acttgtacgt aatgcaaatt gtattcggtc tcgtatttaa        60
     gcttcgtttt atttgttaac cacatcctaa aatcgccgtt tctgttcccc gtgtactgta       120
     tacgttcagt gaatcgagcg tttatgagtc aacgtctgtg attagtgcct ttgtgatata       180
     atcgctaatt gcgctaagtc gtacttcgtt ttgctgataa acaataccaa tactgctctc       240
     cacgctgaat taaaccaaag cgacgcaccc cggtggatag cgtaaactac aattgcaagc       300
     tgcgcagcta gtgtgctttc acctactcga cttgcacgca agttaaattc gtagtcttcg       360
     aagtagtggt gcacatacac actcgcatcc gtgcattgga cttacgctag cataaaatat       420
     caagtgtgtg ctagaataag ggccaatcat ctcgtcgaaa tgaccgctgc atgtgaccgc       480
     tgcgcaaaat cgatcaagcg tggcgaagaa gtgattattt gcatgggatt ctgtgatcat       540
     gtcgttcatt tgcgatgcgc aaacatcgac aaaaatatca tcaaagccat taatgattca       600
     tctaatttga attggatgtg tgatgaatgc gtgaagttga tgaagttaac gcgcttccga       660
     aatgccatct cttccgtcgg aaacacgata aatgagctca ccagaaatca acaagctgct       720
     cacgatgaac tgaaacggga attaatgaag catagtgaac aaatcgctca gctttcgaat       780
     caattcaact cggtcactcc attacatccc gcttctatca atcgtcgcgc atcaaagcgc       840
     cgccggatgg aaaatgatcc tcaagttacc aagcctcttc ttggtggtac aaaggcgact       900
     gactctgtca gtattgcaac cgtgccacag ccaactgctt tgttctggat ttacctctct       960
     cgactgcatc ctagcgttaa accagatgca gttgaaaaat taacgaaaga gagcctgcaa      1020
     tgcaattcag caaaagctat tcctctaatc aagcagggaa cagatgtgaa ttcgttgaat      1080
     ttcatttcat tcaaagtcgg cattgatcct gaatatcgaa cagcagccct cgacccttcc      1140
     tcatggccaa gcggaattct cttccgcgaa ttcgaaaaca ccaacgaacg gaactattgg      1200
     atgcccgaac caagtactcc atcgatcctt gttacatcag attccgaagt aactccccat      1260
     caagccgcca ttgacactgc tgactgctga ccacaaaata ataaaccacg acgcaccgta      1320
     gaaagcacaa tggagacctc ttctcagatc ggcgcagtcc agccaattgc agccatcgtt      1380
     catcggagtc gtcgtggtcc tgctgtcgaa tctgtggaag gggttctcca gcctgctttt      1440
     ccaggcaagt actctaactc aatagaacaa actcttcctg atcgtctccc cgcttccagt      1500
     acattaacga tgtcctctgt acccatcgca tcgtattcgt accgttcatc atgctcatca      1560
     acatctaacc cgggacgctc gacactaagc actatggaag cccctggtcc acctagctca      1620
     gtcgcgccat cgagtgtcgt cgaagaaacg ttgcagcaat gtcgttcgtg ccatccaagt      1680
     cgtcccggcc ctgagtctag tgttggtgaa ggggtcttcc aagccacctg cgatggcaag      1740
     tatctatcca ataatggtgt gtcttgtcct gacgattctt caatccctag ggccgcaacc      1800
     aatgcgagaa atgatgcgtc ggctcctacc aatattctaa tgtactatca aaatgttggc      1860
     gggatcaaca gctctcttgc cgagtatcag ttggccttca gtgacggttg ctacgacatc      1920
     tacgccctta ccgaaacctg gcttaacgga aatacttcta ctagacaact gtttgacgac      1980
     tcttattacg tctatcgaca agataggtca tcctcgaata gtgataaatg ctcaggaggt      2040
     ggagttttgc tagccgttcg ttcaaactac aaatcccatg tgatagatcc tcctggaagt      2100
     tcgatggttg agcaagtttg gatcgctatc agcactgttg atgcaatgct atatttatgc      2160
     gtggtctata ttccaccaga tcgtgtaaat gacgaaattk tgatcgaaaa acatctcgac      2220
     tccctgaatt gggtggtctc acaaatggga ccaagagaca aactcgttat tctgggtgac      2280
     tacaacttaa gtgcgatctt ttggcaacgg aattttcacg gttatctttt tcccgtcgca      2340
     acccgatcct cgattagcct ggcttcgcgg aaacttcttg acgcgtatag taccgctaga      2400
     ctccgccaga tgaatgatgt ggaaaacgaa aataatcgca tactggatct gtgctttttc      2460
     attgaggaaa tacaaaacga ctgtgtggta atgcaggctc cgtccccact cgtaaaaatg      2520
     tgtaggcacc atccacctgt gctgacgaaa attgcgataa gaccacaact acgcttccgt      2580
     gatacaactg aaggtgtcaa ctacgacttc agcaaggccg atttttccgg aatgaataat      2640
     tttcttgcga atgttgactg ggacgaagcg ctccacgatt ctgaagctaa tctcgctgcg      2700
     tcgaccttgt ctggtatact gctgtacgct attgaccagt tcgttccagt caagctcagg      2760
     cgcgatacgc ccaagccagc gtggtcgaat accggactta accatctgaa aagaatgaaa      2820
     caatcagctc ttcggcgaca tagcaagtac cgtacagact ctacgcgagc aacatacatg      2880
     gaagtgaatg ccgaatacaa gaaactcaat aatcgtctgt acaactcttt ccaaaaccgt      2940
     ttgcaaaacc gcctcaaaac taaccctaaa agtttctggc gttatgtaaa tgagcaaaga      3000
     aaggaggtcg gattgccctc tacgatgacc gatggcctga acgaattcaa ttccaccatg      3060
     gacattgcaa atctttttcg cacccagttc agcaacgttt tcatcaatga gcatctccac      3120
     cctcaagaca tagccaatgc caccacaaat gttcctcgac tacctgcatc agtagagcag      3180
     ttcactatca ctgacaacat ggtcatctcg gctggaaagg aactgaaatc gtctactgga      3240
     tttggccctg acggcatacc ttctctagtc ctcaaacgct gtatgaattc actagcatcg      3300
     ccgctggcaa aattattcaa cacatctcta agtactaacg ttttcccgga ctgctggaaa      3360
     cactcctatg tttttccagt gtttaaaaaa ggatgtagac agagcgtttc gaattatcgt      3420
     ggaattgctg cactgagttc aacatctaaa ttgtttgagt taattgttct tcgcaaacta      3480
     actcagagct actctcatta catatcgcca aatcagcatg gctttatgtc tagacgttca      3540
     acgacaacca atttgacttg ctttacctca ttcgtgatac gccaaataga atctggtcac      3600
     caagtagacg cgatacacac cgatttatcg gcagcgtttg ataagatgaa ccatcaaatt      3660
     gcaattgcga aatttgacaa actgggcttg aatgacaaca tgcttctctg gctgaaatcc      3720
     tacctgactg gacgaagcat gtccgtcaaa attggcgaac atgtttcaat gcctttctcg      3780
     gtctggtctg gcgtacctca aggcagccac ctcgggcctt tcttgttttt gctttacatg      3840
     aacgatgtca actttattct ggactgccta aaactttctt acgctgatga tataaagctt      3900
     tactgcacaa tcaataaacc gcaagattct gagtttttgc aacatcagtt ggaaatattc      3960
     gcagaatggt gtaatatcaa caggatgtcc ctaaatgtgt ccaagtgctc agtgatttca      4020
     tttggccgca gacgcacact tctacagttt aattatggtt tggctggtgt cgaactgcaa      4080
     cgtgtaacta cggtgaagga cttaggcgtt ctattggaca ctaagctgac gtttaaggat      4140
     catgttgctt acatcgtctc gaaagcttct gcgcagctgg gttttctgtt ccgcttcagc      4200
     aaaaagttca ccgatgtgta ttgcctgaaa gctttatact gctcaattgt acgccctatc      4260
     ctggaatact catcggttgt atggtcacca ttctacagga acgagattca acgaattgag      4320
     gccgttcaac gcaaattcgt gcgcttcgcc cttcgccgac ttaggtggag agatccactg      4380
     aacttgccaa gctatgaaag ccgctgcaaa cttattgatc tggaccttct tgaacctaga      4440
     cgcaatgtag caaaggcgtg cttcatctct gaccttttgc aaggatcaat agacagccct      4500
     ctgctgctca gttcattgga catcaacact cgtcgccgaa atctccggtt tcatccattt      4560
     ctgaacattc cttccgccag aacaaattat ggccttcacg aaccaatgcg tagcatgtcc      4620
     cgtgtgttta atagttgtta tcatgtgttt aattttaatg tgtcgcgtgg aacaaataag      4680
     tgtaatttta gacaattttt atgttaattc atgtgaaatg tttgtttaga ttttttgtgc      4740
     ttttagactt aagatcaatt gtcattgggg tgggaacttc acctgttgac taaagcagta      4800
     aataaataaa taaat                                                       4815
//
ID   CR1-101_AAe repbase;    DNA;    INV; 5246 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-101_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5246
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1189-1189 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. Closely related to T1 and Q.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..2107
FT                 /product="CR1-101_AAe_1p"
FT                 /translation="MPCGVKSCSVNDDHLLWRCTYCDKKYHAACIGVQRHR
FT                 EHIITAFMVPMCADCQDILMKEADVRKLLHQQEKLLEAVRSQNDTNQRIAA
FT                 DLSKFSLVSVLFESIEHLLNEVNESLALSNKNNESIRNALDQHMVSCDSRV
FT                 TSAITDINISNTKMSQKIKNFFDDSALAIEKAVNSAAEVAVNAITPTKPPT
FT                 TPDPLPIIIDEVRNELASLAKSAAFAAIAEASTTTEHKHAEILFLSKEILE
FT                 EVKSVSSAVETIESSTGKNSSQADKTLAEELAEDILSSVIHKSNTKTHKPS
FT                 RAHQQIQHQQKPQPSPNKHANNVIKELFAERRAKMSRIRSVQTTESQPPNS
FT                 GWRFINNGKKRLWLQDWSKYDATYSNKIAERGSTQNKHERDSNLNKKSNNN
FT                 QIKPSDKQLLATAKVQFAGPPPNTDHPIAALTVPKLINFRKGETINPYRVE
FT                 KQTQPQNNTQLPTVPTTNTAPSSTLTESPGWSLDPLRPPIVTLTQQSAEGD
FT                 GRFLKARLRDPNIMKIVRLFLAYMKDQPANICIDGNTPTSIRMVLASEGLP
FT                 TDPDHLLRIFSDVHQEYGVGPAEAAADLEAYRRYLSSERTNRLQQLRENSH
FT                 KFFSPYPGPSNFRK"
FT   CDS           2233..5085
FT                 /product="CR1-101_AAe_2p"
FT                 /translation="MKSPAKMKEIYKNILSSSFSVILATETSWDESVKSEE
FT                 VFGSGFNVFRGDRNFSESGRKSGGGVLVALSTDFNSEVINTQHFKEFEHVW
FT                 VKSHIAGETHLFASVYFPPDHAHKGTYENFLQCAEQILSQLPPEVKVHIYG
FT                 DFNQRNADFIRDSENESILLPVVGDNETLQFIFDKTANLGLNQINHIKNRQ
FT                 NCYLDFLLTNIYEDFCVTESLNPLWKNEAFHTAIEYSLFIHKNARPNDYEY
FT                 EEAFEYKSADYEKIKCRLNSVNWQEIIRNEGSVETAAYIFNEIVLEIIKQE
FT                 IPSKKIRRNLSTKNPIWYNNHIKNLKNRKQKAHKIYKKHQKDENLAKYLDI
FT                 CTQLNLAISDAFEEYNSKTELEIKSCPKNFFNYVKTKLKSDNFPSVMHLDE
FT                 NVGDNSEKICNLYANFFQEIYTTFSEEDRDRNYFAFYPEFSRDIGVNQINV
FT                 REISDALMNLDASKGPGPDTIPPIFMKNLAKELTAPLFWLFNKSLESGIFP
FT                 KIWKSSFLVPIFKSGRKSDIRNYRGIAIISCIPKLFESIVNEKLFLQIKNR
FT                 ITDTQHGFFKGRSTSTNLLQFVDYSLNAMDNGNHVEALYTDFSKAFDRIDI
FT                 PMLLFKLKKIGIEPRLLKWLESYLTDRQQIIKFKGNKSKPIQVTSGVPQGS
FT                 HLGPLLFIMYVNDISFIFNKLKVLIYADDMKLYLEIRNEEDINVFRNEIEI
FT                 FYIWCKKSLLELNVKKCNLISFSRKRTTPRISISLGNQNVEKCERVRDLGV
FT                 ILDSKLSFVDHYNTIIHRANNMLGFIKRFCYNFHDPYTIKTLYIAYVRSIM
FT                 EYCSIVWSPFSMTHEERLESVQKQFLLYALRKLGWTSFPLPPYKARCMLID
FT                 IQTLKERREIARVSFVNDIVSQRIDSTEILSKLNFYAPSRQLRNRNLFLTN
FT                 HHRTNYAKNGPLNQMMAIYNQHCETIDFTMSRQNLKTYFKSTRNRNT"
XX
SQ   Sequence 5246 BP; 1849 A; 1131 C; 890 G; 1376 T; 0 other;
     ttctgtgacg aaccaccttt gagttcggac gcgctttcat agcgctcttg taaatatttt        60
     acaactagac ttctgacccc gggcccgcgc gcgtaccggt cagtccgtat ttcaattgta       120
     tatatttatt ttctactttt gacaacatag ctctgcgcgc ttctcgtgct ttgccagtaa       180
     ttgcaattaa actttttttt ttaccctcga cgcgagcgta gcgaagtaac tttttttacc       240
     cccgtgtgtg tagtgtggtc atatatcaaa catgccttgc ggagtgaagt cttgcagcgt       300
     caacgacgac caccttctat ggaggtgtac ttattgcgac aaaaaatacc acgctgcctg       360
     tattggagtc caaagacatc gggagcacat tattaccgcg tttatggtac caatgtgtgc       420
     cgactgccag gacatcctta tgaaggaggc cgacgtgcgg aagctgcttc atcaacaaga       480
     aaaacttctt gaagcagtgc gctcacaaaa cgacacaaat cagcgtattg ctgctgacct       540
     aagtaaattc agcttagtgt cagtattatt tgaaagcatt gagcacctgc tcaatgaagt       600
     aaacgaatcg ttggctttgt ccaacaaaaa caacgaaagc atacgcaatg cactcgacca       660
     gcacatggtg tcgtgtgact cacgcgtgac ttcagcaatc accgacatca acatatcgaa       720
     tacaaaaatg tcacaaaaaa ttaaaaactt ttttgacgat tctgcattgg ctattgaaaa       780
     ggcagtcaat tcggcagcag aagtagcagt aaatgcaatc acgccaacga agcctccaac       840
     cactcctgac ccacttccaa taataattga cgaggtcaga aatgaattgg cctcattagc       900
     caaatcagct gcatttgcag caatagcaga agcatcaacg acgacggaac ataaacatgc       960
     agaaatccta ttcttatcga aggaaatatt ggaggaagtt aagtctgtct catctgctgt      1020
     cgaaactatc gagagcagca ctggaaaaaa ctcatcgcaa gccgacaaaa cattagccga      1080
     agagttagcc gaagacattc tttcatcggt catccataaa tccaacacca aaacccataa      1140
     accaagtcgg gctcatcaac aaattcaaca tcagcagaaa ccacagccgt cacccaataa      1200
     acatgcaaat aatgtcatca aagaactttt cgctgaacgt cgagcaaaaa tgtccagaat      1260
     acgatccgtc caaacgactg aatctcaacc accaaatagt ggttggcgat ttataaacaa      1320
     cgggaaaaaa cgactttggc tccaagactg gtctaagtat gatgccacat actcaaataa      1380
     aattgctgaa agaggatcaa cacagaataa acatgaacgg gattccaacc tcaacaagaa      1440
     aagcaacaac aaccaaatca aaccatcaga caagcagctt ctagcaactg ctaaagtgca      1500
     attcgcgggt ccgccaccta acaccgacca cccaatcgct gctctcacgg ttccgaaatt      1560
     aatcaatttc agaaagggtg aaaccataaa cccctaccgc gttgaaaagc aaacacaacc      1620
     acagaacaac acacaattgc caacagtgcc aacaacaaat actgcaccat catcaacgtt      1680
     aactgaatca cctggctggt cactcgatcc cttgcgacca cccatcgtca ccttaacaca      1740
     acaatcagct gagggtgatg gccgcttcct aaaagcaaga ctgcgtgatc ccaacatcat      1800
     gaagatcgtc cgactgtttc tggcatacat gaaggaccag cctgcgaata tctgcattga      1860
     tggcaacaca ccaaccagca ttaggatggt cctcgcgtcg gaaggattgc caacggatcc      1920
     cgatcatctt cttcgaattt tttctgacgt tcatcaggaa tatggagttg gcccagctga      1980
     agcagcagcg gatctggagg cgtatcgtcg gtacctatcg agcgaacgta ctaaccgact      2040
     tcaacaattg cgggagaatt cgcacaaatt cttctctccc tatccaggac cgtcaaattt      2100
     tcgcaagtaa ggacgcccac ttctacggaa gaacacagta taattttatc aaacgacgtg      2160
     cctccaaaca cttctttgca atgtagacag agtgtgactg aaatcttgat atactgtcaa      2220
     aatttcaatc gcatgaaaag cccagcaaaa atgaaggaaa tttataaaaa cattttaagc      2280
     tcatcctttt cggttattct ggcaactgaa acaagctggg atgaaagcgt aaaaagcgaa      2340
     gaagtctttg gaagcggctt caacgtattc agaggcgacc ggaatttttc agagtccgga      2400
     agaaaatcag gcgggggagt actcgttgct ctttcaactg attttaattc tgaagtaatc      2460
     aacacacaac attttaaaga attcgaacat gtctgggtaa agtcacacat agcaggtgaa      2520
     acacacttgt ttgcctcagt gtattttcca cctgaccatg cgcataaagg cacgtatgaa      2580
     aatttcttac aatgtgccga acaaatttta tcacaactcc ccccagaggt taaagttcac      2640
     atctatggtg attttaacca acgcaatgct gatttcattc gggactctga aaacgaaagt      2700
     attttacttc cagtcgttgg ggacaatgaa acattgcagt ttattttcga taaaaccgca      2760
     aatttaggac taaatcaaat taatcatatt aaaaacagac aaaactgtta tttggatttc      2820
     ttattgacaa acatttacga agatttctgt gtaactgagt cattgaatcc attatggaaa      2880
     aatgaagcgt ttcacacagc aatcgaatat tccctattca tccataagaa tgcaagaccc      2940
     aacgactatg aatacgagga agcctttgaa tacaaatcag cagactatga aaaaattaaa      3000
     tgtagattaa atagtgttaa ttggcaagaa ataatcagaa atgaaggaag tgtcgaaact      3060
     gctgcataca tattcaatga aattgtacta gaaatcataa aacaagaaat tccttccaaa      3120
     aaaatacggc gaaacctcag tacaaaaaat ccaatatggt ataacaacca cataaaaaat      3180
     ctgaaaaatc ggaagcaaaa ggcacacaaa atttataaga aacaccagaa agatgaaaac      3240
     ttagcaaaat atttggacat ttgcactcaa ttgaatcttg ccatcagtga tgcttttgaa      3300
     gaatataatt caaaaactga acttgaaata aagtcctgtc caaagaactt cttcaattac      3360
     gtaaaaacaa aactaaaatc tgacaatttt ccatctgtta tgcaccttga tgaaaatgtg      3420
     ggcgacaact cagaaaaaat ttgcaatcta tatgcaaatt ttttccaaga aatctatact      3480
     acattttcgg aagaagaccg cgatcgcaat tattttgcgt tttacccgga attttctaga      3540
     gatattggtg tgaatcaaat caatgtgcgg gaaatttcag acgctctaat gaatttggac      3600
     gcttcaaaag gtcccggccc tgacacgatt ccaccaatat ttatgaaaaa tttagcaaaa      3660
     gaacttacag cgccattgtt ttggcttttt aataaatccc ttgaatccgg aatcttccca      3720
     aaaatatgga aaagctcctt tttagtgcct atctttaaat ctggccgaaa atctgacata      3780
     cgtaattatc gtggtatagc cattatctct tgtattccaa aacttttcga gtcaatcgtc      3840
     aacgaaaaac tatttcttca aatcaaaaat agaattactg acacacaaca tggcttcttt      3900
     aaaggtcgct cgacctcaac aaatttactt caatttgttg actattcatt gaatgcaatg      3960
     gacaatggaa accacgtaga agctctttat acggacttta gcaaggcatt tgatcgcata      4020
     gacataccaa tgctactttt caaactaaaa aaaattggaa tcgagccaag actgctgaaa      4080
     tggcttgaat cgtatttaac tgaccgccaa caaataataa aattcaaagg aaacaaatca      4140
     aaaccaattc aagtcacttc gggtgtccct caaggctctc atttgggacc tcttcttttt      4200
     attatgtatg taaacgacat ttccttcatt ttcaataaac tcaaagtgtt aatatatgcc      4260
     gatgacatga agctctacct ggaaataaga aatgaagaag acatcaatgt attccgcaat      4320
     gaaatagaaa tattctacat atggtgcaaa aaaagcctat tagaactgaa tgtaaaaaaa      4380
     tgcaacctaa tatcatttag cagaaaaaga acaacaccgc gaatttcaat ttcattagga      4440
     aatcaaaatg tagaaaaatg tgaaagagta agggacttag gagtaatctt agactctaag      4500
     ctttctttcg tagaccacta caatacaata attcacaggg ctaataacat gctagggttc      4560
     ataaaacgct tctgctacaa ctttcatgac ccatacacaa ttaaaactct atatattgca      4620
     tatgtaagat caatcatgga atactgcagc attgtatggt ctcctttctc aatgacacac      4680
     gaagaaagat tagaatctgt acaaaaacaa tttctactat atgctcttcg taaattaggt      4740
     tggacatcat ttccacttcc accctacaaa gcacgctgca tgcttattga catacaaact      4800
     ttgaaagagc ggcgtgaaat cgcaagagtt tcatttgtaa atgatatcgt ttcgcaacgt      4860
     attgattcta cagaaatctt atcaaaatta aatttctacg ctccttctag gcaactacga      4920
     aatcgtaact tattcttgac aaatcatcat cgaacaaatt atgccaaaaa cgggcctcta      4980
     aatcaaatga tggccattta caatcaacat tgcgaaacta ttgactttac catgtctcgg      5040
     caaaatctaa aaacatactt caaatccact agaaatcgca acacataaaa taaaacaaaa      5100
     tgaaattaac attacttaca ctacactttt ctttttcaat attttttata aatttcataa      5160
     ttttagtatt aagaaataaa acaaaaatat gtatatgtaa aatgtactag tctacgtcgt      5220
     ttgacgaaat aaataaataa ataaat                                           5246
//
ID   CR1-102_AAe repbase;    DNA;    INV; 4527 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-102_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4527
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1190-1190 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..1388
FT                 /product="CR1-102_AAe_1p"
FT                 /translation="MQCSVKTCNISDDRFLWKCEFCSKNYHAACIGVQRHQ
FT                 ECFILSYMVPLCDDCQHNLKTGIDTRKVLHQQQQLINSIRAQTDANLRIAA
FT                 DLKKLSAMGELFDQIELQLKESVLCINSSTSSSVSNAVSALSRVAEKYSGN
FT                 TNDMPSNDLIAIKNHLTGLLDISMKSSKQHIEDFVEALTVDLTDELKKICT
FT                 EVQSLSSLTIEMAAHCNEHNASIGTARFVENESPPSLLQELAETADLNSGT
FT                 AGWRLLGTKKVWRSDWTEYDKRQKRRALQQKAKEKAQKRKKAKKSFNTSKS
FT                 TTNTNMNNKEKPLNVLPNFMNYNDSHFRGRSNGKCDHDNSQKPKVFINRCR
FT                 KGNNFLPPDRELLAVAKDRYSRPPTNYPPIQFQRGETLNPYPVCNGQQRHV
FT                 PATNQPTNWMEPSCPSTSTASCKSCGCTRYSCFQRN"
FT   CDS           1367..4426
FT                 /product="CR1-102_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="VLVFSTKLTLSLDEENNNDVLDLNISSNLTSTELQDE
FT                 EVTNLSKSDCSTTFKTSSQLGTEVLVYCQNFNRMKSASKMKEIHSRILTCP
FT                 YTVILATETSWDETVNSEEVFGNNYDVFRNDRDCQTSEKKSGGGVLIAVST
FT                 LFSAEIIETTKFKEFEHVWVKVHIAGETHVFVSVYFPPKNARKIVYEKFYN
FT                 IVEHVIGGFPPETKVHIYGDFNQRDIDFFPDVDNESILLPIFGENEALQFI
FT                 CDTSASLGLNHINHVKNQQNCYLDLLMTNTDEDFCVVESLTPLWKNELFHT
FT                 AIEFSLFVHGNNRPKDCDFEEVHDYRSANYDNIRQKINQVSWQNVLRNEEN
FT                 VESAVKMFYKILNDIIHDDIPLIKRRRNHNSKYPIWFSREIKNLKNRKQKA
FT                 HKIYKKCKNDANLINYLNICDQLNLAIDTAFEEYNERTERELKSCPKNFFN
FT                 YVKTKTKSNNFPSEMHLDDKIGVNPEESCNLFATFFQDVYTTYSENNRDRE
FT                 YFSFLPEIPNDICVNQIKVHDIVDALKSLDVSKGAGPDGIPPVFLKMLSIE
FT                 LASPLFWLYNMSLQSGSFPETWKSSFLVPIFKSGKKSDIRNYRGIAIISCI
FT                 PKIFEAIINKILFDMVKNRITHTQHGFFKGRSTCTNLLEFIHYSLTAMDNG
FT                 NHVEALYTDFSKAFDRIDIPMLLFKLEKIGFQPDLLKWVESYLTNRQQIVR
FT                 YKGVKSIPIKVTSGVPQGSHLGPLFFILYVNDISFILKKVKALIYADDMKL
FT                 FLEIVNDEDIHTFQNEIDMFYKWCNKSLLQLNVKKCNSISFSRKRSIPNTT
FT                 VYLGNQLVEKCVRIRDLGVILDSKVTFIDHYNTIINKANKMLAFIKRFSYN
FT                 FHDPYTIKTLYITYVRSILEYCSIVWSPFSSTHENRIESVQKQFLLFALRK
FT                 LGWTRLPLPSYEARCMLINIQTLKKRREFAMVSFVNDIVSHRIDSMTLLSK
FT                 LNFYAPSRQLRSRSIFYTNHHRTNYAKFEPLNQIMSVYNKHCETIDFTMTK
FT                 SELKQKFMSYQNSN"
XX
SQ   Sequence 4527 BP; 1592 A; 812 C; 812 G; 1311 T; 0 other;
     tcagtcattc gtcggaggta gacgcgtttt ttaagtgctc cgtaattatt tttatttaat        60
     ttttttttat tgacaaacat cgcgcgcgac cggcaaaaat gcagtgtagt gtgaaaacct       120
     gtaatatcag tgacgatcgg ttcctatgga agtgcgagtt ttgctccaaa aactaccacg       180
     cggcgtgcat tggagtacaa cggcaccaag agtgttttat cttgtcctac atggtacctc       240
     tatgtgacga ttgtcaacat aatttgaaaa ccggcattga cacccgcaaa gtgctgcatc       300
     aacagcagca gctaattaat tcaattaggg cgcaaactga cgccaatctt cgaatagctg       360
     ctgatctgaa aaagctcagc gcaatgggtg aattatttga ccaaattgag cttcagctca       420
     aggaatcggt gctgtgcatt aacagcagca catcgtcgag cgtatcaaat gctgtatcgg       480
     cattatcgcg tgtggccgaa aaatattcag gaaatacaaa tgatatgccc agcaacgatt       540
     tgattgctat aaaaaaccat ttaactggcc ttttagatat ttcaatgaaa tcttcaaaac       600
     aacatattga agattttgtt gaggcgttaa cggtggatct gactgatgaa ttgaaaaaga       660
     tctgtaccga ggttcagtcg ttgagcagcc taaccattga aatggctgct cattgcaatg       720
     aacataacgc tagcattggt actgcccgat ttgtggaaaa tgagtcaccg ccaagcctat       780
     tacaagagtt ggctgaaact gctgatttaa actctggtac cgcaggttgg cgtttacttg       840
     gaactaaaaa agtttggcgt tcggactgga cggaatatga caaacgtcag aaacgccgtg       900
     cactacagca aaaagccaaa gaaaaggccc aaaagcggaa gaaagcaaag aaaagcttca       960
     acacttcaaa gagcacgaca aatactaata tgaacaacaa agaaaagccg ttaaatgttt      1020
     taccaaactt tatgaactat aacgacagtc acttcagggg cagaagtaac ggaaagtgtg      1080
     atcatgacaa cagccaaaaa ccaaaggtgt tcataaacag atgtcgaaaa ggaaacaatt      1140
     tccttccacc tgacagggag cttctggctg tagcaaagga tcgatactcg agaccgccaa      1200
     cgaactaccc acctatacaa ttccaaaggg gggaaactct aaacccctat ccagtctgca      1260
     atggtcaaca acgtcacgtt cccgccacca accaaccaac aaactggatg gagccgagct      1320
     gtccttcaac atcaactgca tcatgcaaat cgtgtggatg tactaggtac tcgtgttttc      1380
     aacgaaactg acgctctccc tagatgaaga aaacaacaat gacgtgttag atctaaatat      1440
     atcttcaaat ttaacaagta ccgaattgca agatgaagag gtaactaatc taagtaaatc      1500
     agattgttct actactttta aaacttcttc acagttaggt acagaagttt tggtttattg      1560
     ccaaaacttt aaccgtatga aaagcgcttc taagatgaaa gaaatccata gtagaatttt      1620
     aacatgtcct tacacagtta ttttggcaac agaaactagc tgggatgaaa ctgtgaatag      1680
     tgaagaagtt tttggaaata attatgatgt ttttaggaat gatcgtgact gtcaaacgtc      1740
     tgagaagaag tcaggaggag gagtcttaat tgctgtttct acattgttta gtgcagaaat      1800
     catagaaacc actaaattta aagagtttga gcatgtatgg gtgaaagtac acatagcagg      1860
     cgaaacgcat gtgtttgtgt ctgtgtattt tccgccgaaa aacgctcgta aaatagttta      1920
     tgagaaattt tacaatattg ttgaacatgt tattggcgga tttcctcccg aaacaaaagt      1980
     gcatatatat ggagatttca atcaacgtga tattgatttc ttcccagacg tcgacaacga      2040
     gagcatcctg ctgccaatat ttggagaaaa tgaggctttg caatttatat gtgatacatc      2100
     ggcaagtcta ggtctaaacc atattaacca cgttaaaaat cagcagaact gttatttaga      2160
     tctcttaatg accaatactg atgaagattt ctgtgtggta gaatcattga ctcccttatg      2220
     gaaaaacgaa ctttttcata cagctattga gttttcttta ttcgtgcatg gaaataacag      2280
     acctaaagat tgcgactttg aagaagttca tgattatcgt tcagcaaatt atgacaatat      2340
     aagacagaaa atcaatcaag taagttggca aaatgtgtta agaaacgaag aaaatgttga      2400
     atctgccgtt aaaatgtttt acaaaatttt aaacgacata atacacgacg atataccctt      2460
     aataaaaaga agaaggaatc ataactcaaa gtatcctata tggtttagta gagaaatcaa      2520
     aaatttaaag aatcgtaagc aaaaggcaca taaaatatac aaaaaatgta aaaatgatgc      2580
     aaatttaatt aactatttaa atatttgcga tcaattaaat cttgccattg ataccgcatt      2640
     tgaagagtat aatgaacgaa ctgagcgtga attgaaatca tgtcctaaaa atttctttaa      2700
     ttacgttaaa acaaaaacca aatctaacaa ctttccatct gaaatgcacc ttgatgataa      2760
     aattggtgtg aaccctgaag aaagctgcaa tctgtttgca acattttttc aagacgttta      2820
     cactacttat tcggaaaata atcgagatcg tgaatatttc tcatttcttc cggaaatccc      2880
     aaatgacatt tgcgtcaatc aaatcaaagt acatgatatt gtagatgcac taaaaagtct      2940
     agatgtctcc aaaggtgctg gacctgacgg gattccacct gtatttttga aaatgttatc      3000
     aatcgaactt gcatctccgc tattttggct ctacaatatg tctctgcaat caggtagttt      3060
     ccctgaaaca tggaaaagct catttttagt gccgatcttt aaaagtggca aaaaatctga      3120
     catacgtaat tatcgtggga tagccattat ctcttgtatt ccaaagattt tcgaggcaat      3180
     aataaataaa attttattcg atatggttaa aaacagaata actcatactc agcatggttt      3240
     ttttaaggga cgctcaacat gcacaaactt gctggagttc attcattatt ctttgacagc      3300
     catggataat ggtaatcacg tggaagctct ctatacagat ttcagtaaag ctttcgatcg      3360
     cattgacata ccaatgttgc tttttaagtt agaaaaaata ggatttcaac cggaccttct      3420
     taaatgggta gagtcttatc ttactaatcg ccaacaaata gttagataca aaggagtaaa      3480
     atctattcca attaaagtta catcgggagt tcctcaaggg tctcatttag ggccattatt      3540
     ctttatttta tacgttaacg acatttcctt cattctgaaa aaagtgaaag ctctcatata      3600
     tgctgatgac atgaaactgt ttcttgaaat agtaaacgat gaagatatac atacttttca      3660
     aaatgaaatt gatatgtttt acaaatggtg caataaaagc cttcttcaat tgaacgtgaa      3720
     aaaatgtaat tcaatatcct ttagcagaaa gcgtagtata cctaacacaa cagtctacct      3780
     agggaatcaa ctagtagaaa aatgcgtaag aataagagat ttaggagtga ttttagattc      3840
     caaagttact tttatagatc actataatac aattatcaac aaggcaaaca agatgttagc      3900
     atttataaaa cgatttagct ataattttca cgatccatac actataaaaa cattatacat      3960
     aacctatgtg cgttcaattt tagaatactg tagcatagtt tggtcaccat tttcatcaac      4020
     ccatgaaaat cgtatagaat cagttcaaaa acaatttctg ttgttcgcac ttcgaaaatt      4080
     aggttggaca aggttacctc taccatctta tgaagcacga tgcatgctca ttaatattca      4140
     aacattgaag aaacgtcgcg aatttgcaat ggtctcgttc gtaaacgata tagtttcgca      4200
     tcgtattgac tcgatgacac ttttatcaaa attaaatttt tatgctcctt caagacaact      4260
     gcgaagtcgt agtatttttt atacaaacca tcaccgcaca aattatgcca aatttgagcc      4320
     tttaaatcaa ataatgtctg tttacaataa acattgcgaa accattgact ttactatgac      4380
     gaaatcggaa ctaaaacaaa aatttatgtc atatcaaaat tcgaactaga ttaagaaaat      4440
     aacgttttca aactatataa tattaagtgt aaaattgtaa caaaatggtc tacttctgat      4500
     tgacgacatg aaataaataa ataaata                                          4527
//
ID   CR1-103_AAe repbase;    DNA;    INV; 5224 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-103_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5224
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1191-1191 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 24 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           384..1388
FT                 /product="CR1-103_AAe_1p"
FT                 /translation="MDSCQVCSMTLDSGRALSCNGTCSSIFHFTCVGLTKT
FT                 QYASLTAKLGMFWFCNSCRLNFEPAVYDRERTIMKALRELLIRTDSMDTRL
FT                 GNYGENLRKINKTLYDSQVSMPADSSSFAKRIEQLTLDDSSDDPINRSRSC
FT                 NETSFFEVLDAVNCSIAQPPEKFVVGNNKRVQILDNPSTIPANFSNGSRTD
FT                 VSTPAALPHCSNRQSRNILDASVSPTRTEGAARPNNALKVASRVQHSNDVE
FT                 AFYATPFEPEQSEEEVKSFVADITNAHPSLIKVTKLVPRGRSLADLSFVSF
FT                 KITICKTYSKVVSDVWYWPDGISVRPFEANSKNETAVRLQNSS"
FT   CDS           1388..5119
FT                 /product="CR1-103_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNDKITTAESDPDSPYLGRTTSSTLEASSPPIIVESI
FT                 QPAHISRPSPMFGMVEGVFQSVHSGKYEANKDITSSEDVPSRSVSRIAQSS
FT                 FTTAITGATDFQQQPERTLSSCTLEALEPPITVEPIQPAFSSRSGPVYGSG
FT                 EKVFQSVLSGKYQQHKNTIRSDITPARSYHESHHSSQLSTPGCTPASSKEG
FT                 PNSLVTVEPFLPATCSHPGPVYEQEEGVFRTHFAGKYAHRQSNTFAVNSTA
FT                 SSPMYHQLHQRTSSQTEPAISIASGCSTQSQTHQKIVTNSEASSDVLIYYQ
FT                 NVGGINSAISDYKLACSDACYDIYAFTETWLNDNTLSNQLFDNSFSVYRQD
FT                 RSSTNSCKSSGGGVLLAIRSSFKSRLLNPPNDLTVEQLWVAVTSLENTIFV
FT                 CVLYTPPDMVNNDALIDKHLASLDWIVSKMGVKDNIIILGDFNLRGITWQR
FT                 DSIGTLFPDSTCSSMSLATRELLDAYSTVGLKQLSSVLNENNRSLDLCFAS
FT                 EDLCLDCSVMRAPSPLVKNCRHHPPLLITMRRAPQLHYVDSASSVFYDFSK
FT                 ADFCGMNVFLRNVDWXQILNEDDANEAASSLTSILLYTIGQFVPLKTPREP
FT                 VRPAWSNSHLKHLKRLKRAALRKHSKHRTDTTRAAYAESNALYTNLNERLY
FT                 RAHLVQIQDRLKSDPKSFWRHVSDQRNQTGLPSSMTNGADLEANSSTETAE
FT                 LFRAQFSSVFTDEILTAEDISTTTRNVPQLSNPGLPVSVTSNMVISALDKL
FT                 KSSKGYGPDFIPSVLLKKCASSLALPLAKIFNTSLLTGEFPACWKDSFVFP
FT                 VYKKGCRQNVGNYRGIAALSAISKLFELIVLDKLVQTCAHYISPNQHGFMP
FT                 KRSTATNLTVLTTFVIREIQKGHQVDAIYTDLSAAFDKMNHEIALAKFDKL
FT                 GFKNNSLKWLRSYLIGRSMSVKIGDHISSPFPVTSGVPQGSHLGPFLFLLY
FT                 MNDVNLILNCLSLSYADDLKLYYVIKHKNDVVFLQQQLQVFADWCRRNRML
FT                 LNVSKCSVISFGRKHSLLVEDYYLNNTKLQRETTVKDLGILLDTKLTFKNH
FT                 VSYIVCKASSQLGFVLRFAKQFKDIYCLKALYCSLVRPILEYSAIVWSPYY
FT                 QNEVQRIEKIQRKFVRFALRNLYWRNPSNLPSYESRCMLINLELLHARRDV
FT                 SKACFISDLLQNQIDCPALLARLDINIRSRNLRSHSFLHLNAARTNYGLNE
FT                 PLRNMCRTFNKCFEGFDFHVSRNVNKSRFKRILC"
XX
SQ   Sequence 5224 BP; 1451 A; 1225 C; 1046 G; 1501 T; 1 other;
     ccactgttct atcgttgaag ttgtttttcg tgctcgcgag ttttcgatcg ttctgtcagt        60
     gtttttgatc tgaaaaattc ctatagtgga ctcgaactat tcctaatgga cttgtgaatc       120
     actgataatt acaatttgtg caaataagac tacgtgtgtt gtgtcattga gtgatttgtt       180
     tttgtgcgat ttggacaatt attatcgcca ttggcagtat accctttctc gctttcggat       240
     ttttgaagcg ccatctagca gcaaaattgg aaagcttatt tacggctact atcaaggctg       300
     catacttgta ggcgcttaac atcgattatt gctaaccgta ccacagcggt gcttcggaac       360
     agtattgctt tcgtcgttac atcatggatt catgccaagt gtgttctatg actttggact       420
     cgggaagagc actttcatgc aatggaacat gcagctcgat attccatttc acctgtgttg       480
     gcttgaccaa aacacaatat gcttccttga ctgcaaaatt ggggatgttt tggttttgta       540
     actcatgccg cttaaatttt gagccggccg tatacgaccg cgagagaacc atcatgaaag       600
     cattacgaga actgttgata agaacagatt cgatggacac ccggcttgga aattatggag       660
     aaaatctccg taaaataaac aaaactctct acgacagcca agtatcgatg ccagcagatt       720
     cctcatcgtt tgcaaagcgc atcgaacaac tgactctaga tgattcgtct gatgatccaa       780
     taaaccgttc gagatcttgt aacgaaacat cctttttcga agtattggat gctgtaaact       840
     gctcgattgc gcagccgccg gaaaagtttg tagtaggaaa caataaacgt gttcaaatac       900
     tggacaatcc ctccacaata cctgccaatt tttcaaatgg ctctcgcact gatgtttcca       960
     cacctgcagc tttacctcat tgttcaaatc gccagagcag aaatattctg gatgcatcgg      1020
     tttctcctac acgtacagag ggcgcagcta gaccgaataa tgctctaaaa gtcgcaagca      1080
     gagtccaaca ctcgaacgat gttgaggctt tctacgcaac cccttttgaa cctgagcaaa      1140
     gtgaagagga agtaaaatcg ttcgttgccg acatcactaa tgctcatccg tccttgataa      1200
     aagtgacgaa attagttcca cgtggaagaa gtcttgcgga tctttcattc gtgtccttca      1260
     agataactat ttgtaaaacc tattcgaaag ttgttagcga tgtctggtat tggccggatg      1320
     gaatctctgt tcgtccgttt gaagccaact caaaaaacga aacggccgta cgtcttcaga      1380
     actcgtcatg aatgacaaaa taaccactgc agaatctgat cctgattcac catacctggg      1440
     acgcacaaca tcaagcactt tggaagcctc ttcgccaccc atcatagtcg agagcatcca      1500
     gccagcgcac atcagtcgtc ccagtcctat gtttgggatg gtcgaagggg tcttccagtc      1560
     tgtgcactca ggcaagtacg aagcaaataa ggacattacc tcttctgaag acgttccctc      1620
     ccgcagcgta tctagaattg cccaatcatc atttactaca gccattactg gagctacaga      1680
     ttttcagcaa cagccggaac gcacgttatc atcttgcaca ttggaagcct tggagccccc      1740
     catcacagtc gagcccatcc agccagcgtt cagcagtcgt tccggccctg tgtatgggtc      1800
     tggcgaaaag gttttccagt ccgtgctatc aggcaagtac cagcaacata agaacactat      1860
     ccgctctgat atcactcctg cccgcagcta tcatgaatcg caccacagct ctcaactttc      1920
     tacaccggga tgcacgcctg ctagctctaa ggaaggcccc aattccctcg tcacagtcga      1980
     gccattcctg ccagcgacct gcagccatcc cggtcctgtg tacgagcaag aagaaggggt      2040
     cttccggacg cactttgcag gcaagtacgc acaccgccaa tctaatacgt ttgcagtaaa      2100
     ttctaccgct tccagcccca tgtatcatca actccaccaa cggacgtcat ctcaaacaga      2160
     accggctatc agtattgcct ctggatgttc tactcagtcc caaactcacc agaaaatcgt      2220
     taccaactcg gaagcctctt cagacgtcct gatctactat caaaatgtcg gtggtataaa      2280
     tagcgccata tcagactata agctagcgtg tagcgacgcc tgctacgaca tttacgcttt      2340
     taccgaaact tggctgaacg ataatacctt atcaaaccaa ctgttcgaca actctttctc      2400
     tgtttatcgt caagatcgtt cgtccacgaa tagttgcaag agttctggtg ggggcgtctt      2460
     gttagctatc cgctccagct tcaaatcgcg ccttctgaat cctccaaatg atttgacagt      2520
     tgaacaattg tgggttgcag ttacaagcct tgaaaatact atttttgttt gcgtcttgta      2580
     taccccgccg gatatggtta acaatgacgc gttaatcgac aagcatttgg catcacttga      2640
     ttggattgtc tcgaaaatgg gcgtcaagga taacatcatt attctgggcg attttaatct      2700
     gcgcggcatt acttggcaac gcgactcgat cggaactctt ttcccagatt caacttgttc      2760
     atctatgtcg ctggcaacgc gagagttgct ggatgcttac agtactgtcg gactcaagca      2820
     gttgagttct gtcttgaacg agaacaatcg atcacttgat ctgtgttttg ctagcgagga      2880
     tttgtgtctt gattgctctg tcatgcgcgc gccttcgcct ttagtaaaaa actgtcggca      2940
     tcaccctcca ctgcttatta ccatgagaag agcgcctcag cttcactacg ttgacagtgc      3000
     ttcaagtgtt ttctacgatt tttcgaaggc cgatttttgc ggaatgaacg tctttctcag      3060
     aaatgtagat tggamccaga ttcttaacga agatgatgct aacgaagctg cttcatcgtt      3120
     gactagtatt ctactctaca ctattggtca gtttgtgcca ctgaaaacac ctcgtgagcc      3180
     agtcagaccc gcttggtcta attcacatct gaagcatcta aaacgtttga aaagagcagc      3240
     actcagaaag cacagcaagc accgcaccga caccaccaga gctgcttatg ccgaatcaaa      3300
     cgcactgtat accaatctca atgaacgtct ttaccgtgcg catctagtgc agattcaaga      3360
     tcgcctcaag tccgacccca aaagcttttg gcgtcatgtc agtgaccagc ggaaccaaac      3420
     aggtctacca tcttcaatga cgaacggagc tgatttggaa gccaactcat caacagaaac      3480
     tgcagaattg tttcgagctc agttcagcag tgtattcacc gacgaaatac tcaccgctga      3540
     ggacatcagt acaactactc gcaatgtacc acagctgtcg aatccaggtc ttcctgtatc      3600
     agttacttcc aacatggtga tcagcgcttt ggacaaacta aagtcttcga aaggatacgg      3660
     tccagatttc atcccatcag ttcttcttaa aaagtgcgct agttctctgg cgttaccttt      3720
     agctaaaatt ttcaatacgt ctctgcttac tggcgaattt ccggcttgtt ggaaggattc      3780
     atttgttttt cccgtataca agaagggttg cagacaaaac gttgggaatt atcggggaat      3840
     agctgcatta agtgcaatct ctaaactttt tgagctaatc gttctcgata aacttgttca      3900
     aacatgtgca cattatatct cgcctaacca acatggcttc atgcccaaac gatcaacagc      3960
     cacaaattta actgttctaa ctaccttcgt aattcgcgag atacaaaaag gtcaccaagt      4020
     agatgccatt tacactgatc tgtcggctgc attcgacaaa atgaatcatg aaatcgcact      4080
     tgctaaattc gataagttag gattcaaaaa caactcactc aaatggttac gctcatatct      4140
     gatcggccgc agcatgtccg taaaaatcgg cgaccatatt tcatcacctt ttccggttac      4200
     ttctggcgta cctcaaggca gccatctcgg gccgtttcta tttttattat atatgaatga      4260
     tgtcaattta attttgaact gcctaagtct atcatacgct gatgatttga agctgtatta      4320
     tgtaatcaaa cacaagaacg acgttgtgtt cttgcagcaa cagcttcaag ttttcgctga      4380
     ttggtgtcga cgtaatcgga tgctactgaa tgtatcgaaa tgctcggtga tatctttcgg      4440
     ccgaaaacac tcattattag tggaagatta ttacttaaat aatactaaat tgcaacgaga      4500
     aacgacagtt aaggatctag gcattttatt agatactaaa ttaactttta aaaatcacgt      4560
     ttcctacatt gtgtgtaaag cctcttcgca gttaggtttt gttttacgat tcgcgaaaca      4620
     atttaaggac atatattgcc tgaaagcttt gtattgttcc ttagttcgac ctatactgga      4680
     atattcagcc atagtttggt ccccatacta ccaaaatgag gttcaacgaa ttgaaaaaat      4740
     ccagcgcaag tttgttcgct tcgctcttcg taatctctac tggagaaatc cctcgaattt      4800
     accaagctat gagagccgct gtatgctgat taacttggag cttcttcacg caaggcgaga      4860
     tgtttcaaaa gcttgtttca tcagtgatct acttcaaaat caaatagatt gtcctgcttt      4920
     actcgccagg ttagatatta atattcgaag ccgtaaccta cgatcacact cttttctgca      4980
     tttaaatgcc gcaagaacaa attatggctt aaatgagcca ctgcgtaata tgtgtcgtac      5040
     ttttaataaa tgtttcgaag gatttgattt tcatgtttcc cgcaatgtga acaagagtag      5100
     atttaagaga attctttgtt agttttaagg tgtatgttat agccgttaag catgtcattg      5160
     gggtgtataa ttttaacctg ttgacagtaa taataataaa taataaataa ataataataa      5220
     ataa                                                                   5224
//
ID   CR1-104_AAe repbase;    DNA;    INV; 4835 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-104_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4835
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1192-1192 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 29 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..1229
FT                 /product="CR1-104_AAe_1p"
FT                 /translation="MACNICQKVISDDDGVTCRGFCGNSYHMLCVRLDLSH
FT                 EALEAHRKNLFWFCDGCADTLSNDGIQKFAHHCNHDIAHDNVTLQSLKDDI
FT                 CGLKEVVNALTTKFESKSLTPSLRAPRRWIADTLPVPNTPKRIRDDGPMNQ
FT                 PNAKPCNIRGTKTASELVKTVAPPEDLLWIYLSAFHPSTSENDIVNLVREC
FT                 MDMGTDAQPKVVRLVPKDKDPATLSYVTFKVGVSKALKEIALSMDTWPDNI
FT                 FFREFDNSLNSNRRVLRITASNSQSGGGGR"
FT   CDS           1232..4549
FT                 /product="CR1-104_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSSLDPHVPASVFNPERTACSIMEAPSPPDPVALPGC
FT                 SRLHSRSGPVVEDGVGVFQPLITGKYTFHTERPLLESLPNSSTSMVQDPNA
FT                 SPNRIVYTSTHRSSTTLGHCPRSSSTAIIPECTAQNTETCTHSVSTSGSAN
FT                 ISSSSRTISDNAKLTVYYQNVRGLRTKIDDVFVAISATNYDVIVLTETWLS
FT                 DPILSTQIFGDAYTVFRNDRNARNSRKSRGGGVLIAVARHINSAADSTPIV
FT                 DSLEQLWVKLKFTNFSMSVGVIYLPPDRKSDLDSVDNHVESIGAVLSHCQT
FT                 NDHAILLGDYNQSGLVWDLHTDDPPKVDVLRSHISPACASLLDGFNLHGLT
FT                 QINTIFNRNNRLLDLALVNETSLGNCTLSEIADPLSTLDADHPPFVIELGL
FT                 TKPEFDDSLDPPSLDFLRANYSGLAEALASINWAAVDFDTEVDEAVQIFSR
FT                 ELRSAMAEHIPLRRPSSKPPWGNSHLRRLKQVRSKLQRKYRRNQCPVSKQL
FT                 FNRASYQYRIYSRFLYKRYTQRTQQNLRRNPKQFWKFVNSKRKEKGLPVEM
FT                 HLKTEVGSSAREKCNLFASHFKSAFNNFVSSASQIEMACRDTPENAFQMER
FT                 FQITTEHVQTAILKLKLSYVSPDGIPSCIFKKCSDALIQPLTSIFNASLRQ
FT                 GKFPTSWKSSEMFPVHKKDDKRNVENYRGITSLCACSKIFEIIMNDMLFAS
FT                 CKNYITPDQHGFFPKRSTATNLVQFVSFCLCNLDSGSQIDAVYTDLKSAFD
FT                 RVDHGILLARLEKLGVSRDLVHWFKSYLTDRQLTVKIGLDSSEPFSNLSGV
FT                 PQGSNLGPLLFSIFINELSSVLPPGCRLFYADDVKLYVVINCLQDCLHLQQ
FT                 SINHFVDWCNSSLLTVSLQKCHVISFHRKRTPITFDYSIADQPLTRVTEVR
FT                 DLGVTLDTALTFRVHYNDMISRANRQLGFMFKIADEFRDPLCLRSLYCALV
FT                 RSILESNVIVWCPYQSTWISRIEAVQRKFVRYALRSLPWHDPTNLPRYEDR
FT                 CRLLGIETLEQRRNNSQAVFIAKILLGELDSPEILNRINIYAPTRVLRQRG
FT                 FLMLESRNTGYGSHDPIRFMAATFNGVYELFDFNASAERFKRRLREMNR"
XX
SQ   Sequence 4835 BP; 1306 A; 1103 C; 1013 G; 1412 T; 1 other;
     tcgtgtggct tgtttatgta tgagcacgac ttggtaaatg cgttttactt aagcgttttt        60
     tatcagtttt agattgattt tgaattgttt tttttgttga tcggtcaatt gtttcgtgag       120
     ttttctttga cgatttattg gagttcatag tgataatagt gtgtttgctg cttaaaagta       180
     gtttttaaat aatttattgt ggtgtcaaca aagtcaacta gtattgactg catcggtgtt       240
     gctttattac aacgactcgt atgcaacatt tcatcgatcc atcccgtgct taaaagcttc       300
     gattgtgcct gagttcaact tgctgcatat ccaaaggcgt tttcattttt ccatcgtaca       360
     gtgaagatcc tttgaacatt tctgttgccg taatagtcac tacgttggtt cggaatatgg       420
     cctgcaacat ttgccaaaaa gtcatttcag atgatgacgg agttacctgc cgtggtttct       480
     gtgggaactc ttatcatatg ctatgtgtta ggttggacct ttcgcatgaa gcattggaag       540
     ctcacaggaa aaacctattc tggttttgcg acggatgtgc cgatacgttg tctaatgacg       600
     gcattcaaaa atttgctcat cactgtaatc acgatattgc gcatgacaac gttactcttc       660
     aatcacttaa ggatgatatt tgtggactga aagaagtcgt taatgcactt acgaccaaat       720
     ttgaatccaa atcgctcact ccgtccttgc gtgcacctcg gcgatggatt gctgacacat       780
     taccggttcc gaatacgcca aaacgaatac gcgacgatgg accaatgaat cagcctaatg       840
     caaagccatg taatatccgt ggaactaaaa ctgcatccga acttgttaag acggttgcac       900
     cccccgagga tctgctgtgg atttatcttt cggccttcca tccgagcact tccgaaaatg       960
     acatcgtcaa cctcgtgaga gaatgtatgg atatgggcac tgacgcacaa ccgaaagttg      1020
     taagacttgt tccgaaggac aaggatccag caacattatc ttatgttacc ttcaaagtgg      1080
     gtgtgagcaa ggcgcttaag gaaattgctt tatctatgga cacgtggcct gacaacatct      1140
     tcttccggga attcgacaat tctttaaaca gcaatcgccg tgtgttacga attactgcga      1200
     gcaacagcca atccggcggg ggaggtcgat aatgtcatcc ctagatccac atgtacctgc      1260
     ttccgttttc aacccagaac gcactgcctg tagcatcatg gaagccccta gtcctcccga      1320
     cccagtcgcg ctccctggtt gttcccgcct tcatagtcgt tctggccctg tggtcgagga      1380
     tggtgtcggg gtcttccaac cgttaatcac aggcaagtac acatttcata cggaacgtcc      1440
     wctgcttgaa agccttccga attccagcac atcaatggta caagatccta atgctagtcc      1500
     gaaccgaatc gtctatacat ctacgcatcg ctcctcaaca accctgggcc attgtccgcg      1560
     ctcctcatct actgcaatta ttccggaatg cactgcccag aatacagaaa cctgcactca      1620
     ttctgtttcg acgtcgggat cagcaaatat ttcttcgagc agtcgaacaa tctccgataa      1680
     tgcgaaattg accgtgtact accagaacgt acgaggcttg cgcacgaaaa tcgacgatgt      1740
     atttgtagcc atctccgcaa ccaattacga tgtaatcgtt ttaactgaaa cgtggctttc      1800
     cgacccgatt ctttcgacgc agatcttcgg ggatgcatat actgtatttc gaaacgatcg      1860
     taatgcacga aacagtcgta aatctcgtgg tggaggagtt ttaatcgctg ttgcacgtca      1920
     cattaatagc gctgctgact caacgccaat tgttgattct ctcgagcaac tttgggtcaa      1980
     gctaaaattc acgaattttt caatgagtgt gggggttata tacttgccac cagatcgcaa      2040
     atcagacttg gacagtgttg acaatcatgt tgaatctatt ggagccgttc tgtctcattg      2100
     tcaaaccaac gatcacgcta ttctgctcgg tgactataat caatcgggcc ttgtttggga      2160
     tttacacacc gacgatcctc ctaaagttga cgtattgcgg tcgcacattt ctccagcatg      2220
     cgcttcgctt cttgatggct tcaatctcca cgggttgaca caaatcaaca caatatttaa      2280
     taggaacaac cgccttttgg atcttgccct agtgaatgag acatcactag gaaattgcac      2340
     cttatccgaa atcgccgatc ctctttccac gttggatgca gatcaccccc cgtttgtaat      2400
     agaactaggt ctaacgaaac ctgaatttga cgactcgctg gaccctccta gcttggactt      2460
     tctcagagca aactattcag gtttagctga agcactagcg tcaattaatt gggcggccgt      2520
     tgactttgat acagaagtcg atgaagcggt ccagattttt tcccgcgaat tacgcagcgc      2580
     catggctgaa cacattcctt tacgtagacc atcctcaaaa cctccatggg ggaattctca      2640
     cttgcgacga ttgaagcagg ttagatcaaa attacaacgc aagtaccgta ggaatcagtg      2700
     ccccgttagt aaacagttgt tcaaccgagc tagctatcag tatcggattt acagtcggtt      2760
     cctctacaag cgatatactc aacgaacaca acaaaatctg cgaagaaatc ctaagcaatt      2820
     ttggaagttt gtcaactcaa aacgcaaaga aaaaggccta cccgttgaga tgcatttgaa      2880
     aaccgaagta ggaagctctg caagggaaaa atgtaacctg tttgcgtccc atttcaaaag      2940
     tgcgttcaac aatttcgtat cttccgcctc acagattgaa atggcatgca gagatacacc      3000
     ggaaaatgct tttcaaatgg aacggttcca aataacgacc gaacatgtgc agactgcaat      3060
     cttgaagctt aagctctctt atgtcagccc agacggaatt ccgtcgtgca ttttcaagaa      3120
     gtgcagcgat gccttgatcc aaccgttgac atcgatattc aatgcctcat tgcggcaggg      3180
     caaatttcct accagttgga agtcgtctga aatgtttcca gtgcacaaaa aggatgacaa      3240
     gcgcaatgtt gaaaattacc gcggtataac atcactgtgt gcctgctcca agattttcga      3300
     gattatcatg aatgacatgt tgtttgcttc ttgcaaaaac tacatcaccc cagatcaaca      3360
     tgggtttttt cctaaaagat caactgccac aaatcttgtc cagtttgttt cattctgctt      3420
     atgtaacttg gactctgggt cgcaaataga tgcagtatat acggacttga aatccgcctt      3480
     cgatcgtgtg gaccatggga tactactcgc tcggcttgag aaacttggcg tctcacgtga      3540
     tctcgttcac tggttcaaat catacctcac ggatcgtcaa ctcacagtta aaattggatt      3600
     agactcatcc gaaccgtttt ccaatttgtc cggagtgcca caagggagca acttgggtcc      3660
     tctgctgttc tccatattca tcaacgagct ttctagtgtg ctaccacccg gatgccgttt      3720
     gttctatgca gatgatgtga agttatacgt ggttatcaac tgtctccaag actgtcttca      3780
     tcttcaacag tccattaatc acttcgtcga ctggtgcaac agtagcttgt taacagtgag      3840
     tctacaaaaa tgccatgtta tatcgttcca tcgtaagcga acgcccatca cttttgacta      3900
     ttccatcgct gatcaacctc taacacgtgt aaccgaggtt cgtgacttag gcgtaacatt      3960
     agatactgcc ttaacctttc gggtgcatta taacgatatg atctccagag ctaatcggca      4020
     gctcgggttt atgtttaaaa tagctgacga gtttcgcgac cctctgtgtt tacgatctct      4080
     gtattgtgca cttgttcggt ctattctgga atcgaatgtt attgtatggt gcccgtatca      4140
     atcaacatgg atctctagga tcgaagctgt tcaacgaaag tttgtgagat acgccctacg      4200
     tagccttcca tggcatgatc ctacgaatct gccaaggtac gaagaccgct gcagattgct      4260
     aggtatcgag acgcttgagc aaagaaggaa taattcacag gctgtattca ttgcaaaaat      4320
     cttgttagga gagttggact ctcctgaaat actgaaccgc atcaatatat atgctccaac      4380
     gcgggtgcta cgacaacgtg gtttcctaat gttggaatcc agaaacacag gctatggctc      4440
     acatgatcct ataagattta tggcagcaac gtttaacgga gtgtacgagt tgttcgactt      4500
     caacgcttct gctgaacgtt tcaaacgaag gcttcgggaa atgaaccgtt aacgaaacac      4560
     cgaaaaattc atcaaattac aatgttttta ttctttttat agcacaaaac tgattattgt      4620
     tagaatttaa gaactatttg tttgttgtac tgtaagttat ttgttcttag ttttatgttg      4680
     tatttgtatt ttttctcttt aaaagatgtg gggtttttat gcctatttga gcaagtcaaa      4740
     cgatgtggcc agctcaaata ggcttttccc tgccaggctt cataaggact ttacgtccga      4800
     tgaaggttag aaacaaataa ataaataaat aaata                                 4835
//
ID   CR1-105_AAe repbase;    DNA;    INV; 4962 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-105_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4962
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1193-1193 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1181
FT                 /product="CR1-105_AAe_1p"
FT                 /translation="MSKTCGKCSEAINGIDFVICRGYCGAFFHINDCSGVT
FT                 RALQSYFTSNKNLFWMCDECAELFGNSHFRVISNQADEKSPLTSLVSAITE
FT                 LRTEIKQLNVKPTAHASPAANIRWPAIDQRRGTKRPRVHETNAPQLEACRV
FT                 GSKKTQDNVASVPISKADVEPRFWLYLSKICPDVTVEAVRAMTKANLNIEN
FT                 DPIVVKLVPKGKAIESLSFVSFKIGLDPSLKNKXLDPETWPEGLLFREFED
FT                 YGAPKFRVPLRINVQSTPLGTNLSPITPVMDLS"
FT   CDS           1073..4876
FT                 /product="CR1-105_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="IRRLWSPKISRSSEDQCAINTARNKFISNHSRHGFEL
FT                 SFNPGRNNLSVLEALYPPITVPFFPPAFVSRPGPVFGCGERVFRTECQGEY
FT                 HQIQSNAISVTSNAFSXTVPTHTSTNATSTPECTPARLMEAPDPFVTVEPL
FT                 LPASCSHSGPVYDFGKGVFQPVLTGKYASTLNICXPVTSVGSRNFSNDNSS
FT                 NSQRLFDVFANRDQTVSSSALLSPPGCTPASIVEAPNPLITVEPLLPAFSS
FT                 HPGPVYELGDGVFRTAFAGKYACNSNNSLPVTPTVSSNVTDSFACSVHHST
FT                 VSSASPVCSIAEATQNRATSRSVHRSISVYYQNVRGLRTKLVHLRLLLTSC
FT                 DYDVLVFTETWLRDDIESAEISSDYTLFRCDRSPSTSQYSRGGGVLIAVKN
FT                 LLHCEAIPLSNSEELEQIAVCVKSQFRSLYIVAVYLPPNTNADLYSAHANS
FT                 VQSIVNRTSGRDIILSLGDFNLPNLQWVLDDDINGYIPTNISSEQEQCLIE
FT                 SLFSSGLRQVNNVMNTRGRLLDLVFVSLPEFLDLTEPPVPILPIDTHHMPL
FT                 VLLFDVSDENSIEFESRDDDLRYDFTTCDFNQLKEAFADTDWNSQLQGANV
FT                 DESVSLFYDKIFAVCNSSVPLKRRVVNSMFNKPWWTSELRHFRNVLRKARH
FT                 RFFLTKSENDRINLREVEISYKTLLLSTYEAYLTKVQDNVKQNPSRFWDFI
FT                 KKQKSSARVPNNVTYHDLHASSNVEAANLFASFFESVFSKVSPVWRRDSFA
FT                 HIPSYNIRLPMIQFSPEEVLKAIDDLDIKKGPGTDGIPPVLLKKCSAELSI
FT                 PIAYLFNRSLSERTFPMFWKTASVVPIHKSGNMSRVENYRGVSILCCLSKV
FT                 LEKLMHGVLYTIASPIICDSQHGFMKHRSTTSNLMCYVTNLSREIEGRRQV
FT                 DAVYIDFAKAFDTVPHALVTEKLNRIGFPNWISEWICSYLSGRTAHVVVNS
FT                 ASSRSFSITSGVPQGSVLGPLLFNIFVNDLCYLLSSFKLSFADDLKLFRVI
FT                 RSFHDCAALQEDINVMLTWCSNNGMRVNCKKCKVISFTRSNSPINHQYRMN
FT                 TDILQRVTSICDLGVIVDEKLTFKEHVKTTSAKAFSVLGFIRRHAAEFTDV
FT                 YALKVLYCALVRSILEYASPIWSPYHVTDVLSIERVQKKFVRFALRLLPWN
FT                 DPNNLPPYAERCQLIGLEPLSCRRERSQRLLVFDIITNAIDCPVLLEQTPL
FT                 YIPPRSFRNSPLLAVPYHRTNYGYNNPLDSCIRSFNEICNEFDFDISKNLF
FT                 KNRISRP"
XX
SQ   Sequence 4962 BP; 1324 A; 1205 C; 1005 G; 1423 T; 5 other;
     attctggcat cactgctatg ttcatgtatg caattaattc ggtcgtgctt ttttattgat        60
     tttctttgtg aaattccgag ttttaaatca tcgttttgtt tgccgttacc ttatgtgaag       120
     tgaattcgtg gttcctcatt gtgatcgtgt gaaattttag catattcgcg atagtttgtt       180
     tttgtttgat ctgttaaacc acaagagcct tctaccatcc acgccgatct tttccaactg       240
     gagcgacatc tgctggtcaa cacaaaaaac tgctgttcga ttttgaagca tctgagcttt       300
     cgcctgttcg gaggaatatc gaggagtaca ccagattatc tacccgtagg cgcttcacca       360
     tgtcgaaaac ctgtggaaag tgctcagaag ccataaacgg tatcgatttt gtaatctgcc       420
     gtggatactg tggagctttc ttccacatca atgactgctc tggagttact cgtgctttgc       480
     aatcatattt tacatccaac aagaatctgt tctggatgtg tgatgagtgt gcagagctgt       540
     tcggaaattc tcactttcgt gtcatttcaa atcaagcaga tgagaaatca ccccttacwt       600
     cgcttgtttc tgccatcact gaactgcgca ctgaaataaa gcagcttaat gtgaagccca       660
     cagctcatgc atcaccagca gctaatatac gttggcctgc tattgatcag cgtagaggca       720
     caaagcgtcc tcgagtgcat gaaactaatg cgcctcaatt ggaagcttgt cgcgtaggca       780
     gcaaaaaaac gcaagataat gtcgcttcgg ttccaattag caaagccgat gtggaaccaa       840
     gattctggct ttatctctcc aagatttgcc cagatgtcac cgtggaagct gttcgkgcaa       900
     tgacaaaagc caacctgaat atcgaaaatg atccaatcgt ggtgaaactt gtgccaaaag       960
     gtaaagctat cgaatcactt tccttcgtct cgttcaaaat tggactagac ccttcgctca      1020
     agaataaakc gcttgatcca gaaacatggc ctgagggcct actgtttcgt gaattcgaag      1080
     actatggagc cccaaaattt cgcgttcctc tgaggatcaa tgtgcaatca acaccgctag      1140
     gaacaaattt atctccaatc actcccgtca tggatttgag ctgagtttca acccaggacg      1200
     caacaattta agtgttttgg aagccctgta tccccccatc acagtcccgt ttttcccgcc      1260
     agcgttcgtc agtcgtcctg gtcctgtgtt tgggtgtgga gaaagggtct tccgaaccga      1320
     atgtcaaggc gagtatcatc aaattcaatc aaatgccata tcagttactt caaacgcttt      1380
     tagtwcgact gttccaaccc acacttcaac taatgctacg tcaacaccgg aatgcacgcc      1440
     tgcacgcctt atggaagccc ctgatccttt cgtcacagtc gagccactcc tgccagcgtc      1500
     ctgcagtcat tccggtcctg tgtacgattt cggaaagggg gtcttccaac ccgtcctcac      1560
     aggcaagtat gcatcaacac tgaacatctg csctccagta acttctgttg gttccagaaa      1620
     tttttctaac gacaacagct ccaattctca acgcttattc gacgtattcg ccaaccgtga      1680
     tcagacagta tcatcttcag cacttctctc gccaccggga tgcacgcctg ctagtatcgt      1740
     ggaagcccct aatcctctca tcacagtcga gccactcctg ccagcgttca gcagtcatcc      1800
     cggtcctgtg tatgagcttg gtgacggggt cttccgaacc gcattcgcag gcaagtatgc      1860
     atgtaattcg aacaattctc ttccggtaac gcctaccgtt tccagcaacg taactgattc      1920
     gttcgcgtgc tctgttcatc attccacggt atcgtcggca agccctgttt gttccattgc      1980
     cgaagcaact caaaatcgtg caacatcgag gtccgtacat cgttctatct cggtgtacta      2040
     tcaaaacgtc agaggattgc gcaccaaact tgtccacctg cgactcctgc taaccagctg      2100
     cgactatgac gtgcttgttt ttaccgagac gtggttgcgt gatgatattg aaagtgctga      2160
     aatctcatct gactatacgc tttttcgctg cgaccgtagt ccatcaacta gtcaatattc      2220
     acgcggtggt ggcgtattaa ttgctgtgaa aaatctcctt cactgtgagg cgattccatt      2280
     gtccaacagc gaagaattgg aacagatagc agtctgtgtg aaatcgcaat ttcgttcgct      2340
     ctacattgtt gctgtttatc tccctccaaa cacaaatgcc gatttgtatt ctgctcatgc      2400
     aaattcagtg caatcaatcg tgaatcgcac atcgggcaga gacatcattt tgtccttagg      2460
     tgactttaac ctccctaatt tgcaatgggt tttggacgac gacataaatg gttatattcc      2520
     aacgaacatt tcttccgaac aagaacaatg tctcattgaa tccttgttct catctggctt      2580
     acgacaagtc aacaatgtaa tgaatacgcg cggtagactt cttgatcttg tgttcgtaag      2640
     tctaccagag tttttggatt tgacagaacc tcctgtacca attttaccta ttgacactca      2700
     tcacatgccg cttgttttac tatttgacgt gagcgacgag aattcgatcg agtttgaaag      2760
     ccgtgacgac gatctcagat acgattttac cacctgtgac ttcaaccaac taaaagaagc      2820
     atttgcagat accgattgga actcgcaact gcaaggcgct aatgtagatg aatcggtttc      2880
     gttattttac gataagattt tcgcagtatg caattcttct gtccctctca aacgaagggt      2940
     cgtcaactct atgttcaaca aaccgtggtg gacctctgaa ctgcgtcatt ttcgaaacgt      3000
     gcttcgaaag gctcgtcacc gtttttttct caccaaatct gaaaacgaca gaattaatct      3060
     acgtgaagtg gaaatatcct acaaaacatt actgctatcg acttatgaag cttacttaac      3120
     caaggttcag gacaatgtta agcaaaatcc atctcgtttc tgggatttca tcaaaaagca      3180
     aaaatcatct gctcgcgttc ctaacaacgt aacttaccac gatcttcatg caagctcaaa      3240
     cgtggaagcc gccaatcttt tcgcctcgtt ttttgaaagt gtgttcagta aggtctctcc      3300
     cgtatggcgt cgtgacagct ttgctcatat tccgtcgtat aacatccgcc ttcctatgat      3360
     ccagttctct cctgaagaag tattgaaagc catcgatgat cttgacatca aaaaagggcc      3420
     ggggacagac ggtattccac cggtgctctt gaaaaaatgc tctgcggaac tatcgattcc      3480
     tattgcgtat ttgttcaatc gatcgctcag tgaaagaacg tttccaatgt tttggaagac      3540
     agcatctgtt gtgcccatcc ataagtctgg aaacatgagt cgcgttgaaa attatcgtgg      3600
     cgtctctatt ttgtgctgtt taagcaaagt tcttgaaaag ctaatgcatg gagtactgta      3660
     tacaatcgcc tcacctataa tctgcgacag tcaacatggc ttcatgaagc atcgatcgac      3720
     aacatccaat ctaatgtgtt atgttaccaa cttatcacgt gaaattgaag ggaggaggca      3780
     agtcgacgcg gtgtacatag attttgccaa agccttcgat actgttccac acgctttagt      3840
     cactgagaag ctgaaccgca tcggcttccc gaactggatt tctgaatgga tttgctcgta      3900
     tctctctgga cgtaccgcac acgtagtagt taactcagca agctcccgat cattcagcat      3960
     tacgtctggc gtgccccaag gcagcgttct tggaccatta ctgtttaaca tattcgtaaa      4020
     cgatctgtgc tatctccttt cctcgttcaa gctgtcgttc gccgacgact taaaactttt      4080
     ccgagtcata cgttcgttcc acgattgtgc ggcattgcaa gaggatatca atgtaatgtt      4140
     aacctggtgt agcaataacg gtatgcgcgt gaactgcaaa aaatgcaagg ttatatcctt      4200
     cacccgttca aactccccaa tcaaccacca atatcgcatg aacaccgata tactgcagcg      4260
     agtaacatcc atatgtgact tgggagttat cgttgacgaa aaactaacgt tcaaggaaca      4320
     tgtgaagaca acgagtgcca aagcattctc agtgctagga tttatacgtc gacatgctgc      4380
     ggagtttacc gatgtatacg cattgaaagt gctatattgt gcgttagtac gtagcatctt      4440
     agagtacgcc tccccgatat ggtccccata tcatgttacg gatgtactct caatcgaacg      4500
     tgtccaaaag aaattcgtac gttttgcatt gcgactgctt ccttggaacg atccaaacaa      4560
     tcttcctcca tatgctgaac gctgtcaact gataggatta gagccactat cttgcagacg      4620
     tgagagaagt caacggttgc tagttttcga catcatcaca aatgcgattg attgtcccgt      4680
     gcttcttgag caaacaccgc tttacatccc tcctcgtagt ttccgaaact ctccattact      4740
     agctgttcca tatcaccgga caaattacgg ctacaacaac ccgcttgact cctgcattcg      4800
     gtcgtttaac gagatttgta acgaattcga ttttgatata tccaaaaact tgttcaaaaa      4860
     ccgtataagt aggccatagg aaatttagat atagttagtt cagtctgtac gacttacagt      4920
     cgaagacggt gaaataaata aataaataaa taaataaata aa                         4962
//
ID   CR1-106_AAe repbase;    DNA;    INV; 5553 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-106_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5553
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1194-1194 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >96%
CC   identity. Sequences around 2500-2650 are unclear due to the
CC   small number of copies and divergence.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1483
FT                 /product="CR1-106_AAe_1p"
FT                 /translation="MDLCQVCLNRLDSGSLINCSGACGKMFHFGCVGMTKP
FT                 HFSSWSAKIGLFWFCESCRLNFDPAVYDREKTIMKALRELLIRTDSIDTRL
FT                 GNYGDNLRKISKSLNGCQRQSKPDNCYQQQSSFLHSINELSLDDTMDDPIN
FT                 RSRSCDDTSFFEVLDEINSSISGQPDKFVVGSSKRVQIIENPTSNAGTSRN
FT                 TSRTNVSTPAAPDKRSIVPSNKPSSSQTTDGIQNPTESTVDKIVTVSASSL
FT                 NNCGNHRDNSSKPPSIPLKVAKTTQLSNESESFYVTPFAPDETEEEVKLYV
FT                 CEISNTHSSLVNVIKLVPRGKTADDLSFVSFKVTVSKSISNVVGDPWYWPE
FT                 GISVRTFEPNPKNGVFSRLPRT"
FT   CDS           join(1417..2535,2557..5355)
FT                 /product="CR1-106_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GNICPYFRAKSKKRSFFPPSQDLVNTNLYHPYPVLPE
FT                 QATFPVSSGERLNSICPAEAGKDTTPFLNGESNFQYFERAVVQNRQNNDCI
FT                 YTSNECPAMNNIQPGCHTDYPSVVFTPSVDPEDISAYHFAIRPVLSGKLYS
FT                 GICPAVARVDTAPNLNGGSYPQLNHYVSPAIDRTPSDENRDSRVYHLAALP
FT                 VLSGKSDSGICLAVASDDAAPNLNGDSHLQPINRSATSITQSGGHSEDSEG
FT                 IRAYHSEHLPASSGKSNSGICLAEARQNTAPNLNGIPLLQLNDDDSTSPTI
FT                 DPGSTSSCRVSSNKVILEMYYQNVGGMNTTLADYSLACCDTSYDMIALVET
FT                 WLNDKTLSQQIFGPSYSVSVSDHQVHIYFFNLLVSQYDPNLDKTSKKIKNK
FT                 RIFLYFVYRCDRSSSNSVKRSGGGVILAVSSMFKSRIIFPPSGIGVEQLWV
FT                 AITFAGWTLYVCVVYFPPDRIHDSELIDAHLDSLTWVFNEMGINDSIMIIG
FT                 DFNIPSIEWKLNSSGFLHPDSNRSVVHKLSCKLLDGYSTAGLAQINGVTNS
FT                 NGRMLDLVFVSNELLHISDVFEAPAPLVKTSRHHPHLQLALKASMQSSIAT
FT                 VEEIYYDYNRADYRSMNEFLASINWNELLFDCDANAATVRFSNVVLYSIDQ
FT                 FVPIKIVKRSNHPAWFNSALRRLKTKKRHALTVYTKHRNARNKRRYVTING
FT                 IYKRLNKRLYLAYQTGIEEKLKXNPKNFWQHVNKQRKEDGLPSTMVCNNVE
FT                 ASSVGDIAELFRLHFQSVFVAEHLPDLNILNAASNVPQGPAFEQISPISTE
FT                 MVESTGNHLKISTSPGPDGIPSIVIRKCISSIALPLATIFNQSLLSGVFPK
FT                 NWKTSYVFPVFKKGDKRVISNYRGIASLSAASKLFEKLVLEYMMHHCSNLI
FT                 AEEQHGFTPKRSTMSNLVLYTNSILREMESGNQTDAIYTDFSAAFDKVNHQ
FT                 IAVAKLNRLGFNGFFLVWIKSYLTDRSMSVKIGTHLSSSFTVTSGVPQGSH
FT                 LGPLIFLLYLNDVNLLLSCYKLSFADDFKLYLTIKTEADADFLQDQLNIFS
FT                 DWCTSNRMILNSSKCSVITFTRKQNPIIRDYILHGTVLNRESVVKDLGVLL
FT                 DSKLSFKDHISYVTTKASAQLGFIFRITKQFKDVYCLKTLYCSLVRSILEY
FT                 GSVVWSPFYKNGVDRIESVQRKFLRFALRLLPWNDPLNLPNYEDRCKLINL
FT                 DLLEVRRNVSKATFIADLLTSRINCANLLCQLNINIRSRILRTNDFLRVPG
FT                 SRTNYCYNSPLASMCRVFNKCYNVFDFNLSRSTIKKRIKQLLCYS"
XX
SQ   Sequence 5553 BP; 1583 A; 1237 C; 1050 G; 1682 T; 1 other;
     ttctgggaac actgccgctc gtagttcgtt tgtttgtttt tcttgttcga tttcataccc        60
     gtttttgaca atactttcgg ctagttaaaa taccgaaaat aatagaatcg gacggtttgc       120
     cataagcttt actttcgtac agaattcgtt tttgtgtgtg gctgctgtac tagtgatatt       180
     ttgtgccatc aaattgctat ttgtttaccc gctacaacac ccactttcgc tcatttttcc       240
     tttcgaagcg ccatctgcca gattttattg gaaactgtgc aagatattgc atacaagcga       300
     ctttgcaata ttcgttcaac cgctccaggt gtctgcatac ccaaaggcgt tacaactagc       360
     ttctcgcact tgcagaaatt tcggaaggat ggatttatgt caagtttgct taaatcgctt       420
     ggactctgga agcctgatta attgcagcgg agcatgcggc aagatgtttc attttggttg       480
     cgtcggaatg accaaaccgc atttctcctc atggtcagcc aaaattggat tattttggtt       540
     ctgcgagtcc tgtcgtttaa actttgatcc agcagtttat gatagagaaa aaacgatcat       600
     gaaggctcta cgtgaattgc tgattcgtac tgattccata gacacgagac ttggaaatta       660
     cggcgataat cttcgtaaaa ttagcaaaag cctaaacgga tgtcaaagac aatcgaagcc       720
     agataattgt taccaacaac aatcctcgtt tttgcatagc atcaatgaac tctctttgga       780
     cgatacaatg gacgatccaa tcaatcgctc tcgatcttgt gatgatacat cattcttcga       840
     ggttttagac gagatcaata gttctatctc gggccaacct gataagtttg ttgttgggag       900
     tagcaaacga gtgcagataa tagagaaccc aaccagcaat gccggaacca gtaggaatac       960
     atctcgaaca aatgtgtcta cccctgctgc tcccgacaag cgatcgattg tcccttcaaa      1020
     caaaccttca tcttctcaaa ctaccgatgg aatccagaat ccgactgagt ctactgttga      1080
     caagattgtt actgttagcg caagctcgct gaacaattgt ggcaatcatc gtgataactc      1140
     gtccaaaccg ccttcaattc cactgaaagt tgcaaaaacc actcagctat ccaatgaatc      1200
     agaatcattt tatgtgacac catttgcacc ggatgaaacc gaagaggaag tgaagctcta      1260
     tgtatgcgag atttcaaata ctcactcgtc attagtaaat gtgattaagc tcgttccacg      1320
     cgggaaaact gccgacgacc tttcatttgt ctcattcaaa gtaacggtta gtaaatcgat      1380
     ttcgaacgtg gtcggcgatc cgtggtattg gcctgaggga atatctgtcc gtactttcga      1440
     gccaaatcca aaaaacggag ttttttcccg ccttcccagg acttagtgaa caccaattta      1500
     tatcacccgt atccagtttt accggaacaa gcgacgttcc ctgtttcgtc aggtgagcgt      1560
     ttgaatagta tatgtcccgc cgaagccggg aaagacacta caccctttct gaatggagaa      1620
     tccaactttc agtattttga acgtgctgtt gttcaaaacc gacaaaacaa tgactgcatc      1680
     tacacttcaa acgaatgtcc agctatgaat aatatacaac ctggttgcca caccgattat      1740
     ccttctgttg tattcacacc atccgttgat cctgaagaca tcagtgcgta ccactttgcc      1800
     atccgtcctg ttttgtcagg taagctctac agtggtatat gtcctgccgt agccagggtc      1860
     gatactgcgc caaatttgaa tggaggttcc tatccgcagc tcaaccacta cgttagtcct      1920
     gcaatcgacc gtacgccatc cgatgaaaac cgtgattccc gtgtatacca cttagccgcg      1980
     cttcctgttt tatcaggtaa gtctgacagt ggtatatgtc ttgccgtagc tagcgatgat      2040
     gccgcaccaa atttgaatgg agattcacat ttacagccca tcaaccgttc tgccacttcc      2100
     atcacccaat ccggcggcca ttctgaagac tcggaaggca tccgtgcata ccactctgaa      2160
     caccttcctg cttcgtcagg taagtcgaac agtggtatat gtcttgccga agctagacag      2220
     aatactgcac ccaatctgaa cggaattcct cttcttcagc tcaacgacga cgattctact      2280
     tcccctacta ttgatcccgg atctacttca agttgtcgcg tgtcatccaa caaagttatc      2340
     ctggagatgt actaccaaaa tgtcggcggg atgaacacaa ctttggctga ttactcttta      2400
     gcctgctgcg atactagcta cgatatgatc gcattggttg aaacatggct caatgacaaa      2460
     acactctctc aacaaatttt tggtcctagc tattccgtat ccgtttccga ccatcaagtt      2520
     catatttatt ttttttgaaa ctgttacgtg tcgtaaaatt tgttagtttc ccagtatgat      2580
     ccgaaccttg acaaaacatc aaaaaaaata aaaaataaaa gaattttcct ttattttgta      2640
     tatcgatgtg accgttcatc ctccaatagt gtcaaacgtt caggaggtgg agttattcta      2700
     gcagttagct ccatgtttaa gtctcgcatc attttccctc cttctggcat cggagttgag      2760
     caactttggg ttgctattac attcgcagga tggaccttgt acgtatgcgt agtttacttt      2820
     ccgcccgacc gtatccatga ctccgaactt atcgatgctc atctagattc gctcacctgg      2880
     gtattcaatg aaatgggcat caatgacagt atcatgataa taggtgactt taatattccg      2940
     tcaatagagt ggaagctaaa cagttcaggc tttttgcatc ccgattctaa tcgatctgtt      3000
     gttcacaaac tttcctgtaa attacttgac ggttacagca ctgccggttt ggcgcaaatc      3060
     aacggagtga caaatagtaa cggccgaatg ttggacctcg tctttgtcag taacgaactt      3120
     ttgcatatct ctgacgtctt tgaagcccca gcgccattgg tgaagactag caggcatcat      3180
     cctcatctac aactcgctct caaggcatct atgcagagct caattgcaac ggtggaagaa      3240
     atctattacg actataacag agccgactat cgatccatga atgaatttct ggccagtatc      3300
     aactggaacg aactactgtt tgattgcgac gcaaatgctg cgactgttcg tttctcaaat      3360
     gtcgttctat attcgattga tcaattcgtc cctattaaga tcgtgaagcg atctaatcat      3420
     ccagcttggt tcaattctgc tttgaggaga ttaaaaacta agaaacggca tgccctaacg      3480
     gtttacacaa aacaccgaaa tgcccgtaac aaacgtcgct atgttacaat caatggcatt      3540
     tataaacgtc tcaacaaaag gctttatctc gcttatcaaa caggaatcga ggaaaaactt      3600
     aaatktaacc ccaaaaattt ctggcagcat gtgaacaaac aacgcaaaga agatggtctt      3660
     ccgtctacca tggtgtgtaa caacgtggaa gcgtcctctg tcggagacat tgcagaattg      3720
     tttcgcctac actttcaaag cgtattcgtt gctgaacacc ttcccgatct caatatccta      3780
     aatgcggctt ccaatgttcc tcaaggtcct gctttcgaac aaatatctcc tatttccact      3840
     gaaatggttg agtctactgg aaatcatcta aagatatcaa cgagtcctgg tccagatggg      3900
     attccttcaa ttgtaatccg taaatgcata tcatcgatag cattaccttt agcaacgatt      3960
     ttcaaccaat cgttgttaag cggtgtattc cccaagaatt ggaaaacatc ttatgtattt      4020
     cctgttttta aaaaaggaga caaaagagtt atatcgaact atcgtggaat cgcctcctta      4080
     agtgccgcct ctaaactgtt tgaaaagctg gttttagaat acatgatgca tcattgctcc      4140
     aatttgattg ccgaagaaca acacggtttt acaccgaaac gatcaacgat gagtaactta      4200
     gttctctaca ccaactcgat tctccgtgaa atggagagcg gaaaccaaac tgatgccatt      4260
     tatacagact tttcagccgc tttcgataaa gtaaaccatc aaattgcagt agctaagctt      4320
     aatcgtctcg gcttcaacgg tttcttcctt gtatggatca aatcgtacct cacggatcga      4380
     tccatgtctg ttaaaatagg aacgcacctc tcatcttcgt ttaccgtgac atcaggagtc      4440
     ccacaaggaa gtcatcttgg gccgctgatt ttcttgttgt acctcaacga cgtgaatctt      4500
     cttctgagct gttacaaact gtcattcgct gatgatttca aactctattt aactattaag      4560
     actgaagctg atgcagactt tcttcaagat caactcaaca ttttttcgga ttggtgcact      4620
     tcaaatagaa tgattttaaa ttcttcaaaa tgctcagtta taacatttac gcgcaaacag      4680
     aatcccatta tcagagacta tatcttacat ggtaccgttt tgaacagaga atctgtcgta      4740
     aaagatctgg gagttctatt agactcgaaa ctttctttca aagatcatat ttcttatgtg      4800
     accacaaaag cttcagctca attaggtttt attttccgta ttactaaaca gtttaaagat      4860
     gtgtattgtc tgaaaacttt atactgttcc ttagttcgct caatccttga atatgggtcg      4920
     gttgtttggt ctccttttta taaaaatggt gtcgacagga ttgaatcagt tcaaagaaaa      4980
     tttttaagat tcgctttaag attattgcct tggaatgacc cgctgaacct cccgaactac      5040
     gaagatcgct gtaaactaat aaacctagat ctccttgaag tgcgacgaaa tgtatcgaaa      5100
     gcgacattta tcgctgacct gctgacttct cgtataaact gtgccaattt gctgtgccaa      5160
     ttgaacatca acatccgtag tcgaattttg cgcaccaacg actttcttcg cgtaccggga      5220
     tcgagaacta attactgtta taattctcct ttagctagta tgtgtcgtgt attcaacaag      5280
     tgttataatg tgtttgattt taatttgtct agatctacta ttaagaaaag aattaagcaa      5340
     ttattgtgtt attcgtaaga tttgaatgtt atttaacaga tatttgttta ttagttttaa      5400
     gtcaattgta tcatttggat ttgttaatct gttgatgcga aaagatgaga aggttttatg      5460
     cctatttgag agagagttca tttttaagct caactcaaac gggcttttcc ctactcctaa      5520
     aataaaataa aataaaataa aataaaataa aaa                                   5553
//
ID   CR1-107_AAe repbase;    DNA;    INV; 5105 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-107_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5105
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1195-1195 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..1182
FT                 /product="CR1-107_AAe_1p"
FT                 /translation="MVKNCGKCAKAINGIEFVVCRGYCGATFHINECSGAT
FT                 RAMLSYFTTHKKNLFWMCDKCADLFENSHFRAISCQADETSPLASLTSAIT
FT                 ELRTEIKQLNSKPHPGSTPASSVQWPIINQRRGSKRPRMAEPVARASETCQ
FT                 VGSKKPQENDPSIPICKKEDIQRFWLYLSKIRPDVTVEAVSAMVKANLNID
FT                 ADPPIVKLVPKGRTIESLSFVSFKIGLDPSLQQIALDPETWPEGLLFREFE
FT                 DYGAPKFRFPLTTTPSLLTPQAASSPATPVMDLS"
FT   CDS           1080..5015
FT                 /product="CR1-107_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RLRSPKISVPADDNAFTVNSSSCFITCHPRNGSELDS
FT                 SSQHSSSSAPGCTPASLMGALNPLVAVEPLLPASSSHPGPAYECGEEVSQL
FT                 APAGKYSHPKNASRPVICTTFDSPTHTASNPSSEWIEFSSNWRNISSSTNE
FT                 LRTSSKGCNVSSSLSKFSSAQLQSPGCAPASLMEAPNPFVAVEPLLPASSS
FT                 HPGPAYECGEGVFQPVLAGKYNHVKNTSPSVIRTTFGSLPHIGYGSNSSKC
FT                 IVTSTIDSIRSLTSSQPSSAQLSSQSTLPSSSPGCMPASLMGDPNSFVAVE
FT                 PLLPASCSHPGPAYEIEEGVSQPVLAGKYSSIENNYLPVISTDSSSQAQRI
FT                 DRHAPSTPPSSDISPRSSIAVYYQNVRGMRTKISRLRLILSSCDYDVLVFT
FT                 ETWLRDDIDSTEISPDYTFFRCDRSRVNSQHARGGGVLIAVKHHLRCEMFP
FT                 LSDCDQLEQVAVRMKLDNRSLYIITIYIPPNSSADRYSAHANAVQGLVNSV
FT                 SADDIVLSVGDFNLPNLRWQMDDELNGYIPSNASSEQEKSLIETLFATGLR
FT                 QVNNFENINNRLLDLVFVSLPELLDLVQPPAPLLPIDNHHAPFILLLDVSV
FT                 SIPATLDDDADRVEYDFNVCDFDQLAIALGNVDWSILEQTGTVDELSAAFY
FT                 NKLLEICDALVPRKRRTINSPSSKPWWTSELRRLRNLLRKARQHFFLSKSE
FT                 GDKIALREAEATYKSVLQTTYDDYISGVQASVKQDPTRFWGFVKKLKSSTR
FT                 IPCNVSYDETLASSNEEAANLFAEFFESVFSKSSPVPRQDCFAHVPSHNIN
FT                 FPIMQFTADEVLNVIYTLDCKKGPGTDGIPPLLLRKCAAELVTPVTLLFNR
FT                 SLSERTFPSVWKTAFIVPIHKSGNINRVRNYRGISILCCLSKIFEKLMHNA
FT                 LYTVAAPIISEYQHGFMRHRSTTTNLMCYVTSLSREIESGNQVDAVYVDFA
FT                 KAFDTVPHILIIDKLKRIGYPDWLTEWIFSYLSARTAQVVVNSSRSRQINV
FT                 TSGVPQGSVLGPLLFNIFVNDLCLCLSSFKLSFADDLKFYRIIRSSLDCFA
FT                 LQEDINTLLIWCSDNGMRVNNDKCKVITFTRSNNPVTHQYHMEFAHLERVA
FT                 SICDLGVTIDAKLQFHEHVGITTAKAFSVLGLIRRHASEFTDIYALKTLYC
FT                 SLVRSILEYAAPVWSPYYVAPILSIERVQKKFVRFVLRSLPWNDPDNLPPY
FT                 PDRCQLISLEPLTVRRVKMQRLFVFDILNGAIDCPALLEQISLQIPSRRLR
FT                 NTPMIAIPYHRTNYGFNNPFDSCLRSFNVVSDQFDFDMCKNVFKTRISRIV
FT                 "
XX
SQ   Sequence 5105 BP; 1322 A; 1347 C; 1049 G; 1387 T; 0 other;
     tacccttaat tcgcactgat ctgtttacgt ttcataccgg caattacttg cgtttttaat        60
     cgggtaaaat cgatcttttt tagtcacttt ttgtgtttct cttgtgatta tcgttttgtg       120
     taccgctgtg ttatcgaggt tttcgagtgg tcagcgtgaa tattgcgaaa aatctaccgt       180
     atagtgtttc attatttcaa caatagctac aacccgctgt actcttattc cactttcgtg       240
     acaaccgtac atttgagcag cgtttccaca catacgcgcc atctacatct ggaaaaagta       300
     aaccggctta ttggcgatct aaatcgattg acgatctaaa aacaacgagt tgtcaagatg       360
     gttaaaaatt gtggaaaatg cgcgaaggcc ataaatggca ttgaatttgt agtttgccgt       420
     ggttattgtg gagctacgtt ccacattaac gaatgctcgg gtgctacaag agcgatgtta       480
     tcgtatttca cgacgcacaa gaagaatctt ttctggatgt gcgacaaatg tgccgacctg       540
     tttgagaatt cccacttccg tgccatttcg tgccaagccg atgagacttc acctcttgca       600
     tctctgacgt ctgcaataac tgagcttcgc acggaaataa aacaactgaa ttcaaagccc       660
     caccccggtt cgactccagc ttcaagtgta caatggccta ttattaacca acgaagaggt       720
     tcaaagcgcc cacgcatggc cgagcctgtg gcacgtgcat ctgaaacctg tcaagtaggc       780
     agtaaaaaac ctcaagaaaa tgacccatcg atccctatct gcaagaaaga agatattcaa       840
     cggttttggt tgtacctctc aaagattcgc cctgacgtca ctgtggaagc tgtgagtgcc       900
     atggttaaag caaacctcaa tattgacgca gatccaccca tcgtcaagct tgtaccgaag       960
     ggaagaacaa tcgaatctct ttccttcgtc tcgtttaaaa ttggtttgga tccttcctta      1020
     caacaaattg cgcttgatcc tgagacatgg ccagagggac tactgtttcg agaatttgaa      1080
     gactacggag ccccaaaatt tcggttcccg ctgacgacaa cgccttcact gttaactcct      1140
     caagctgctt catcacctgc cacccccgta atggatctga gctagattca tcaagtcaac      1200
     actcgtcatc ttcagctccg ggatgcacgc ctgcaagcct tatgggagcc ctcaatcccc      1260
     tcgtcgcagt cgagccactc ctgccagcgt ccagcagtca tcccggccct gcgtatgagt      1320
     gtggagaaga ggtctcccaa ctcgctccag caggcaagta ctcccatcct aaaaacgctt      1380
     ctcgtccagt aatttgcacc acttttgaca gccctacgca cactgcctcc aatccgtctt      1440
     ctgaatggat cgaattttcc tcgaattggc gaaatatttc ttcatcaacg aacgaactca      1500
     gaacttcttc gaaaggttgc aacgtttcat catcattgag caaattttct tcagcacaac      1560
     ttcaatcccc gggatgcgcg cctgcaagcc tcatggaagc tcccaatccc ttcgtcgcag      1620
     tcgagccact cctgccagcg tccagcagcc atcccggtcc tgcgtacgaa tgtggagagg      1680
     gagtcttcca acccgttctc gcaggcaagt acaatcacgt taaaaacact tctccgtcag      1740
     taattcgcac cacctttggc agtctacctc acattggtta cggcagtaac tcatcaaagt      1800
     gtatcgtaac ctcaacaatc gacagcatca gatctctgac atcaagccaa ccatcatcgg      1860
     cccaactttc atctcaatca acgcttccat cgtcgtcccc gggatgcatg cctgcaagcc      1920
     ttatgggaga ccccaattcc ttcgtcgcag tcgagccact cctgccagcg tcctgcagtc      1980
     atcccggtcc tgcgtacgaa atcgaagagg gggtctccca acccgtcctc gcaggcaagt      2040
     attctagcat cgagaacaac tacctcccag taatttctac tgattccagc agccaagctc      2100
     aacgcattga tcgtcacgct ccaagcacac caccatcgag cgacatttca ccgagatcca      2160
     gcatagcagt atactaccaa aacgtacgag gtatgcgcac caagatttct cgactccgtt      2220
     tgatactgtc tagttgtgat tatgacgtgc ttgttttcac tgaaacctgg ctccgtgatg      2280
     acatagatag tacagaaatt tctcccgact acacgttctt ccgttgcgac cgcagtagag      2340
     taaacagtca gcatgcacgt ggtggtggcg tgctgattgc cgttaagcat catcttcgtt      2400
     gtgaaatgtt cccactgtcg gattgcgatc aattagagca ggttgcggtt cggatgaagt      2460
     tggacaatcg ctcactctac attattacta tctatattcc tcctaactcg tccgccgacc      2520
     gatattctgc ccacgcaaat gcagtacagg gcctcgtaaa cagtgtttca gcagatgata      2580
     ttgttctctc cgtgggggac ttcaacctcc caaatttgcg atggcagatg gacgacgagc      2640
     tgaacggcta cattccctcg aatgcttcat cggaacaaga gaaatctctc atcgaaaccc      2700
     ttttcgctac aggcctgcga caagtgaaca atttcgagaa catcaacaat cgactccttg      2760
     atcttgtttt cgtaagtctg ccagagctac tggatctagt tcaacctccc gccccactat      2820
     tacccattga caaccaccat gcgccattca ttttacttct cgacgtgagt gttagtattc      2880
     cagccacact cgatgacgat gctgacagag tggagtatga cttcaacgtg tgtgatttcg      2940
     atcagctggc tatagcttta ggaaatgttg actggagtat tctcgagcaa accggtacgg      3000
     tcgacgaatt gtctgcagcg ttttacaaca agcttctcga aatttgtgac gctttggtcc      3060
     cgcgcaaacg acgtacgatt aactcacctt ccagcaaacc gtggtggact tccgagctgc      3120
     gtcgtctccg taatttactg aggaaagcac gacaacactt cttcctctcg aagtctgaag      3180
     gcgacaaaat cgccctacgt gaagccgagg caacatacaa gtctgttttg cagactacct      3240
     acgacgacta catatccgga gtgcaggcca gcgtcaagca agatccaacg cgcttctggg      3300
     gctttgtaaa gaaactgaag tcatccaccc gcatcccttg caatgtaagc tatgacgaaa      3360
     ctcttgccag ttctaacgaa gaagccgcta atctctttgc tgaatttttc gaaagcgtgt      3420
     tcagtaaatc gtctcctgta ccccgtcagg actgctttgc gcatgttcct tcgcacaaca      3480
     ttaacttccc catcatgcag ttcaccgccg atgaggtgct gaatgtcatt tacactctgg      3540
     actgtaagaa aggacccggg acggacggca ttccaccact gctcctgaga aaatgtgctg      3600
     cagaacttgt cactcctgtc acgcttttat ttaatcgatc tctgagcgaa agaacatttc      3660
     cttccgtgtg gaagacagct ttcatcgttc caatccacaa gtcagggaac atcaaccgag      3720
     tcagaaacta ccgtggtatt tcaatactgt gttgcttgag caaaattttc gaaaaactga      3780
     tgcacaatgc cctctacacc gtagctgcac cgataatatc cgagtatcaa cacggattca      3840
     tgagacatcg ctcaacaaca acaaacctga tgtgctacgt tacctcgctg tcacgggaga      3900
     tagagtcggg aaatcaagtt gacgcagtgt atgttgactt cgcaaaagcg ttcgatacgg      3960
     ttccgcatat tttaatcatc gataaactca agcgaattgg ctacccggat tggctcacgg      4020
     agtggatttt ttcgtaccta tccgctcgta ctgcgcaagt agtggtcaac tcatcaaggt      4080
     cccgtcaaat caacgtaacg tctggagtgc cccagggtag cgtattgggt ccactgttat      4140
     tcaatatctt tgtgaacgac ttgtgtttgt gcctttcatc tttcaaactc tcgttcgccg      4200
     atgatctcaa attctaccgt atcatacgtt catcacttga ctgttttgcg ctgcaagagg      4260
     acatcaacac tttgctgatc tggtgcagcg acaacggtat gcgtgtcaat aatgataaat      4320
     gcaaagttat aactttcact cgctccaaca accccgttac ccaccagtac cacatggaat      4380
     ttgcacatct agaacgtgta gcttcgatct gcgacctggg agttaccatc gacgctaagt      4440
     tacaatttca tgaacacgtt ggaatcacga ctgctaaagc tttttcagtc ctgggactaa      4500
     tccggcgcca cgcttcagaa ttcactgata tctatgcttt gaaaacactc tactgcagtt      4560
     tagtgcggag cattcttgaa tacgcggccc ctgtctggtc accgtattat gttgcaccga      4620
     tactctccat tgaacgcgtt caaaagaagt ttgttcgttt cgtacttcgc tcccttcctt      4680
     ggaatgatcc ggacaatctt cctccgtatc cggatcgctg ccaactgata agtttagaac      4740
     cgctgactgt caggcgtgta aaaatgcaac gtctatttgt atttgacatt cttaacggtg      4800
     ctatagactg tcctgcgctt ctcgagcaaa tatctctgca aatcccttct cgacgactgc      4860
     gaaacactcc catgattgcg attccttacc atcgcactaa ttatggtttc aataatccgt      4920
     tcgactcttg tcttcgttcc ttcaatgttg tttccgatca atttgacttc gatatgtgca      4980
     aaaatgtgtt taaaactcga ataagtagaa ttgtttagat gttaagtatg cgtaaattag      5040
     tgctaagtgg ttcagtctgt acgattttaa ttcgaagacg gtgattataa ataaataaat      5100
     aaata                                                                  5105
//
ID   CR1-108_AAe repbase;    DNA;    INV; 4939 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-108_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4939
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1196-1196 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1746..4862
FT                 /product="CR1-108_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPNPLISVEPLPPATSSHPGPEFECVEGVFQPITA
FT                 GKYVHVSNNSRSVXSIDSSRQAPMEARLDDGAIEIIESGDVPAAEDSVKER
FT                 MFSMYYQNVRGLRTKIARLRLMMSSCDYDVIVFTETWLREDIDSSEISSDY
FT                 AIFRCDRSSRTSQHLRGGGVLIAVKNVLNCESVHLNDCDELEQVAVCVKLR
FT                 QRSLCIIAVYFPPNSNVELYTAHAKAVQEMTDRLSADDIILSIGDFNLPSL
FT                 RWCLDEDINGYIPMNALTETERCLTEGLFACSLRQVNSFVNVNDRLLDLVF
FT                 VNLPEYFDLVAPPSPLLTIDNHHTPFVLLLDNSEIPTLLDDQLNCFNFDYA
FT                 TCDFDLLNSNFGRIDWDLQLFSDTVDQMLAAFYVLLNDVVSNHVPRKRKAS
FT                 VSVFSKPWWTPELRNLRNGLRKMRKRYFLSKSDIDRVQLRQREAEYEQALS
FT                 STYENYLLRIQSSVKQNPSYFWDFVKQRKSNNRIPFSVSFNGVTSRSNVEA
FT                 ANCFASFFEGVFSRTSPVQRNNHFAQITSHDIHLPRFEFSQDAVRKVLEGL
FT                 DTSKGPGTDDIPPVLLKNCANTLALPIAAVFNRSLRDGIFPKAWKLAAIVP
FT                 IHKSGNLNCVSNYRGVSILCSLSKVFEKMIHEVLYSAAAPYISISQHGFMK
FT                 NRSTTTNLMCYVSEISRGMETKNQVDAVYVDFAKAFDTVPHNLIIDKMKHL
FT                 GFPDWFTKWLYSYLSGRSAFVKVNSIRSRYFSIPSGVPQGSVLGPLIFIIY
FT                 INDLSELISCSKLSFADDLKFFRTIASPADCFDIQADIDLLLVWCGDNGMR
FT                 VNEKKCKVISYTRRSNVIHHEYCMGLNPLERVNSICDLGVTIDSKLRFNEH
FT                 INIIVAKAFTVLGFIRRHASGFNDVYCLKTLFCSLARSILEYATPVWSPYY
FT                 ATHTLIIERVQKHFLRFALRQLPWNDPQNLPCYPDRCKLINLETLSARRTK
FT                 LQRLFIFDLITGNVDSPELIQLIPWNTPPRRFRNTLMFAVPFHRTNYGSNN
FT                 SLNSCLRSFNDVSNAFDFNLSKDMFKLRIRSIE"
FT   CDS           join(147..920,802..1827)
FT                 /product="CR1-108_AAe_1p"
FT                 /translation="MAKQCAKCCEAINGIXYVVCRGYCGAFFHMNACSNVT
FT                 RALQSXFTTNRXNLLWMCDKCADLFENSHFRAISTSADQKSPLNTLTTAIT
FT                 ELHTEIKKINSKPNVQFSPAAXWPIITQRRATKRPLETIVPARASENCCVG
FT                 SKQPLGNVVSVPVCKNEDPKFWLYLSRIRPDVSXEAVSAMVKANXDIDDDL
FT                 VVVKLIPKEKDITTLTFVSFKVGLDPSMKSKALDPETWPQGVLFREFEDYG
FT                 SQKFRFXRTRNRQHLQRSQKRWIXKHGLRACYSXSLRITDLKSFVXLVQET
FT                 GNTFSDSANIVSCYSGNGFELNGLHPGRTILSNPEALDPPXTVVPFQPAFN
FT                 SRPGPVFGFGDGVPVXSGKYTXIKENYVPDSFIVSSEPSQCHQLPSALIVP
FT                 APGCKLRSPMEAPKPLISVEPFLPATSSHPGPEFECVEXVFQTVXXGEYVH
FT                 VSNNSRPVMSIACRHHSXPVXFDVSNHSSHHQLXSSAXIISGCTPASHMEA
FT                 PNPLISVEPPGPEFECVRGSSKPSRRVVQCEQFSSSNVHRFSTICACTSTF
FT                 PIIRHIINFHRPGKSFRPRDARLQASWKPPILSSQSSHSRQRPAVIPVLSL
FT                 SV"
XX
SQ   Sequence 4939 BP; 1348 A; 1167 C; 1038 G; 1357 T; 29 other;
     ggcaawtttt ttctgatcac cgcgacatct gcagaataat agttgaagca caaatcgcat        60
     acaagttcca atacaagcca cgtttgcaac tacaacatac aakcgggcat aagtaatacg       120
     cgctgcataa ccacaggcga ttcacsatgg caaagcaatg cgcaaagtgc tgtgaagcaa       180
     tcaatggwat ckattatgtt gtctgtcgcg gttattgtgg cgctttcttc cacatgaacg       240
     cgtgttcgaa tgtgacacgt gcgctwcaat ccwacttcac aacgaataga aakaatctcc       300
     tctggatgtg cgacaagtgt gcggatctat tcgaaaactc acactttcgc gctatwtcga       360
     cttctgcsga ccaaaaatca ccattgaaca cgcttaccac tgcgatcaca gagctacata       420
     ctgagataaa aaagataaat tcaaagccta acgttcaatt ttctcctgct gctawctggc       480
     caattataac tcaacgtaga gcsacaaaga gaccgcttga gacgatcgta ccggcccgag       540
     cctcggaaaa ctgttgtgtt ggaagtaaac agcctctggg caatgtcgta tctgtaccag       600
     tttgcaaaaa cgaagaccca aaattttggt tgtacctgtc cagaattcga ccagatgttt       660
     cawtcgaagc tgtttcagct atggtsaaag ctaacwtgga tatcgatgat gatctcgtag       720
     tggtgaaact cattccaaaa gagaaggata taacaacact cacattcgtg tccttcaaag       780
     ttggtcttga tccgtcaatg aagtcaaaag cgttggatcc mgaaacatgg cctcagggcg       840
     tgttattccg kgagtttgag gattacggat ctcaaaagtt tcgttttsct cgtacaagaa       900
     accggcaaca ccttcagcga tagcgcaaac atcgtctcct gctactccgg taatggattt       960
     gaattgaatg gactccatcc gggacgcacc attttaagca atccggaagc cctcgatcca      1020
     cccwtcacag tcgtgccatt ccagccagcg ttcaacagtc gtcccggccc tgtgtttggt      1080
     tttggtgacg gggtgcccgt tgmttcaggc aagtacacac kcattaagga aaattatgta      1140
     cctgattcgt tcatcgtttc cagtgaaccg tcacaatgtc accaacttcc atctgcattg      1200
     attgttcctg ccccgggatg caaacttcgc agccctatgg aagctcctaa acctctcatc      1260
     tcagtcgagc cattcctgcc agcgaccagc agtcatcccg gtcctgagtt tgagtgtgta      1320
     gagsgagtct tccaaaccgt aawtscaggc gagtatgtgc acgtgtcgaa taattctcgt      1380
     ccagtaatgt ccatcgcttg tagacaccat tctkcgcctg tamacttcga cgtttccaat      1440
     cattcgtcac atcatcaact twcatcgtcc gcaasaatca tttcgggatg cacgcctgca      1500
     agccacatgg aagcccctaa tcctctcatc tcagtcgagc cacccggtcc tgagtttgag      1560
     tgtgtgaggg ggtcttccaa accgtccagg cgagttgtgc agtgcgaaca attctcgtcc      1620
     agtaatgtcc atcgctttag caccatctgc gcctgcactt caacgttccc aatcatccgt      1680
     cacatcatca actttcatcg tccaggaaaa tcgttccggc cccgggatgc acgcctgcaa      1740
     gcctcatgga agcccccaat cctctcatct cagtcgagcc actcccgcca gcgaccagca      1800
     gtcatcccgg tcctgagttt gagtgtgtag agggggtctt ccaacccatt accgcaggca      1860
     agtatgtgca cgtgtcgaac aattctcgtt cagtamaatc catcgattct agccgccaag      1920
     ctccgatgga agctcgattg gatgacggag ctattgaaat cattgaatca ggagatgtac      1980
     ctgccgcaga ggatagtgtc aaagagcgca tgttttcgat gtattatcaa aatgttaggg      2040
     gattgcgcac caaaatagct cgtttgcgtt tgatgatgtc cagttgtgac tacgacgtga      2100
     ttgtcttcac tgagacatgg ctacgcgagg atattgacag cagtgaaatc tcttccgact      2160
     acgcaatttt taggtgcgat cgaagttcta ggacaagcca acatttgcgt ggaggaggag      2220
     ttctgatagc tgtcaaaaat gtcttgaact gtgaatcagt tcatttgaat gattgtgacg      2280
     aactcgagca agtggcagtt tgtgtgaaat tgaggcaacg gtcgctgtgc ataattgctg      2340
     tatactttcc accgaattca aacgttgagc tgtacaccgc tcatgcgaag gcagtgcaag      2400
     aaatgacaga tcgattgtca gccgatgaca tcatcctgtc gattggtgac ttcaatcttc      2460
     ccagcttgcg atggtgtttg gacgaggata ttaatggata catccccatg aatgcactca      2520
     cagaaacaga gagatgttta actgaagggt tgtttgcctg cagtctccga caggtcaaca      2580
     gttttgttaa cgtaaatgat agacttctgg atctcgtttt cgtcaacctt ccagagtatt      2640
     ttgacttggt agcgccgcct tctccacttt taactattga caatcaccat actccattcg      2700
     ttttactact tgacaacagc gaaattccga ccttacttga cgaccagcta aactgcttca      2760
     attttgacta tgcaacctgc gactttgatt tgcttaattc taatttcgga cgaattgact      2820
     gggatcttca attgttcagt gacacagtag atcagatgtt agccgctttc tatgttttac      2880
     tcaatgatgt agtcagcaat catgtaccta ggaaaaggaa agcgtctgtc tccgttttta      2940
     gcaaaccgtg gtggactcct gagctaagaa atctccgtaa tggcctcaga aaaatgcgta      3000
     agcgttattt tctctcaaag agtgacatcg acagagttca gctgcggcag cgtgaagctg      3060
     agtacgaaca ggctctttcg tcaacgtatg agaattattt gctaaggatt cagtcatctg      3120
     tgaagcaaaa cccttcgtac ttctgggact ttgtcaagca acggaaatcc aacaaccgca      3180
     ttcctttctc ggtcagtttc aacggagtga catctcgttc gaatgtggaa gcagccaatt      3240
     gttttgcctc attttttgaa ggcgttttta gcagaacctc acccgtccaa cgtaataacc      3300
     actttgccca gataacgtct cacgacatac atcttccacg cttcgagttt tctcaagatg      3360
     cggtacgaaa ggttctagaa ggactggaca cctcgaaagg acctggcacg gatgacatac      3420
     ctccagtgtt actaaagaat tgcgccaata cacttgcatt gcccattgct gctgtgttca      3480
     atcgttcgct ccgagatgga atttttccaa aggcatggaa actggcggca attgtaccga      3540
     tccacaaatc cgggaatctc aactgtgtct ccaactatcg tggtgtatct atcctgtgca      3600
     gtcttagcaa ggtgttcgaa aaaatgattc acgaagttct gtatagtgct gctgctccgt      3660
     atatctcaat tagtcagcat ggctttatga agaacagatc aacgacaaca aacctgatgt      3720
     gctatgtgtc agaaatatcc cgaggcatgg aaaccaaaaa ccaagtcgac gcagtttatg      3780
     tggattttgc gaaagctttc gacacagtac cgcacaatct gatcatcgat aaaatgaagc      3840
     atctaggttt ccccgactgg tttacaaagt ggctgtactc atacctctct ggacgtagcg      3900
     cttttgtaaa agtgaactcg attagatcaa gatactttag cattccatcc ggagtaccgc      3960
     aaggtagcgt acttggacca cttattttca ttatttacat taatgacctg agcgaactga      4020
     tctcttgttc caaactatcc tttgccgacg acctaaaatt tttccgaacc atagcttctc      4080
     cagctgactg tttcgatatt caagctgata ttgatctatt gttagtttgg tgtggtgaca      4140
     atggcatgcg tgtcaatgag aagaaatgta aggttatatc ttacactcgc cgcagtaacg      4200
     tgattcacca tgaatattgt atgggtttaa atccacttga acgagtaaac tcaatatgtg      4260
     atttgggggt cactattgac tcgaagctcc ggttcaatga acacatcaac atcatagttg      4320
     ccaaggcatt cacggtgctg ggctttatac gtcggcatgc atctggattt aacgatgtgt      4380
     actgcctgaa gacgctgttc tgttcactag ctcgcagcat tttagagtat gccacaccag      4440
     tttggtcgcc ttattatgca acgcatacat tgatcatcga gcgtgtccag aaacattttt      4500
     tgagatttgc tctgcgacaa ttaccatgga atgatcctca aaatcttccc tgctaccctg      4560
     atcgttgcaa actgatcaac ctagaaactc tctcagcccg tcgtaccaaa ttgcaaagac      4620
     tatttatctt tgaccttata acaggtaacg tagatagtcc ggaacttatc cagctgattc      4680
     cgtggaacac accacctcga cgcttccgaa atacattaat gtttgctgtc cctttccaca      4740
     gaacgaacta tggttcaaat aattctttaa actcgtgttt aagatcattt aacgatgtaa      4800
     gcaacgcatt tgattttaac ctctcgaaag atatgttcaa acttagaata agaagtatag      4860
     aataatatag tttttaagaa atcagtctgt acgacaaagt cgaagatggt gaataaataa      4920
     ataaataaat aaataaata                                                   4939
//
ID   CR1-109_AAe repbase;    DNA;    INV; 2999 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-109_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2999
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1197-1197 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >97%
CC   identity. The consensus is 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2892
FT                 /product="CR1-109_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="AAPASSNILMYYQNVGGINSSLAEYNRAVSDSCYDVY
FT                 AFSETWLNANTLSNQLFDSSYIVYRQDRSASNSNKRTGGGVLFAVRSNFKS
FT                 RVLNSPNGSSIEQLWVAITTVDATLYLCVIYIPPDRVNDESLIEKHTDSLD
FT                 WVVSQLKPRDSIMIIGDFNLSGISWQYDXSGSLFPVASRSTISLTSRKLLD
FT                 AYSTACLRQTVGIMNENSRVLDLCFVSEELRDASTVMQAPSPLVKTCRHHP
FT                 PILLKMEICPQKRFHDVSESVFYDFRNADFNGMNDFFENVDWDDVLRDSDA
FT                 NLAASTISAILLYGIDQYVPVKVKREPSKPAWSNSELKNLKRVKKAALRRH
FT                 SKFRTDSTRARYMQANTEYKQLNDCLYNAHQDHLQSILKANPRSFWKHVNE
FT                 QRKESGLPPTMSDGLHEADSKEDIADMFRTQFSNVFTNEHVDPDIVNDAIR
FT                 DVPRLSTFVQQIIITDDMVASASKELKSSTGSGPDGIPSLVLKRCAETIAA
FT                 PLARVFNLSLASGVFPNCWKQSYVFPVFKKGSKQLVSNYRGIAALSATSKL
FT                 FEVIILQKLVQSYAHYISPDQHGFMPKRSTTTNLACFTSFILRLMEAGQQV
FT                 DAIYTDLSAAFDKMNHQIAVAKFDKLGMGNSMLLWLQSYLTGRNMSVKIGD
FT                 HVSSPFRVWSGVPQGSHLGPFLFLLYMNDVNFKLKCLKLSYADDLKLYWTI
FT                 KQPEDAVFLQHELEAFAEWCQINRMSLNVSKCSVISFSRKHAPFHFGYFLA
FT                 GTQLERVSTVKDLGILLDSKMTFKDHVAYAVSKASSQLGFLFRYAKKFRDV
FT                 YCLKALYCSIVRPTLEYSSIIWSPYYQNGIKRVEAIQRKFVRFALRHLRWR
FT                 DPLNLPSYGSRCQLIKLESLVSRRNVAKACFVGDLLQGNIDCSTLLSCLDI
FT                 NVRRRNLRTHSFINIPSARTNYGLQEPMRSMSRVFNMCYHVFDFNVSRETN
FT                 KSSYRRVLC"
XX
SQ   Sequence 2999 BP; 798 A; 727 C; 645 G; 827 T; 2 other;
     gctgcaccag cttcatccaa catcctaatg tactaccaaa acgttggcgg tatcaatagc        60
     tcgctcgccg aatacaaccg ggccgttagt gatagttgct atgacgtcta cgctttctcc       120
     gaaacctggc tcaacgctaa tacattgtcg aatcagctct tcgacagctc gtacatcgtg       180
     taccgtcaag accggtcggc ttccaatagc aacaaacgta ccggaggcgg cgttttgttc       240
     gctgttcgat cgaatttcaa atctcgtgtg ctaaattctc ctaacggatc atcgatcgag       300
     caattgtggg ttgctattac cactgtcgac gcaacgctct acctgtgtgt gatttacatc       360
     ccccctgatc gggtgaacga tgagtccctg attgaaaagc atactgactc gctggattgg       420
     gtggtttctc aattgaaacc aagagacagc attatgatta tcggcgattt caacttgagt       480
     ggtatttcct ggcagtacga ctsttccggt tctctctttc cggttgcctc tcgatcaacg       540
     atcagcctga cgtcccgaaa gctactagac gcgtacagca ccgcctgcct ccgacagact       600
     gtcggcatta tgaatgaaaa ctcccgagtg ctagacctgt gcttcgtcag cgaggaatta       660
     cgagatgcta gtacggtaat gcaagcccca tcgccacttg ttaaaacgtg caggcatcat       720
     cctcccatac tgctgaaaat ggagatatgt ccgcaaaaac gcttccacga cgtttccgaa       780
     agtgttttct acgatttccg taacgctgac ttcaacggaa tgaacgattt cttcgaaaat       840
     gttgactggg acgacgttct tcgagattct gatgcaaatc tggctgcctc gacaatctct       900
     gctatcttgt tgtacggcat agatcagtac gttcccgtca aggtcaaacg tgaaccttcg       960
     aaaccagcct ggtctaattc cgaactgaaa aatctcaaga gggtgaagaa agcagctctc      1020
     agacgtcata gtaagtttcg tacagattct acgagagcac ggtacatgca agcgaatact      1080
     gaatataagc agctgaatga ttgtctgtac aacgctcatc aggaccattt gcaaagcatc      1140
     ctcaaagcaa accctagaag cttctggaaa cacgtcaatg aacaacggaa agaatctgga      1200
     ttgcccccta cgatgtccga cggcttacat gaggccgatt ccaaagaaga cattgctgat      1260
     atgttccgca cgcaatttag taacgtcttc accaatgaac acgtcgatcc agacattgtt      1320
     aatgatgcaa ttagagatgt tccccggctt tccaccttcg tgcagcaaat cataatcact      1380
     gacgatatgg ttgcatcagc aagcaaggaa ttgaaatcgt ccacaggatc cggtccggat      1440
     ggcattcctt ctcttgttct caaacgttgt gcagaaacaa ttgcagcccc gctagcaagg      1500
     gtttttaacc tatccctggc ttctggtgtg tttccgaatt gctggaaaca gtcgtacgtt      1560
     tttccagttt tcaaaaaagg tagcaaacag ttagtctcca actatcgtgg aatagctgcg      1620
     ctgagcgcta cttcgaagct gttcgaggtc attattctgc aaaaattggt ccaaagctat      1680
     gcacattaca tatcgcctga tcaacacgga ttcatgccca aacgttcgac gacaactaac      1740
     ctggcttgct tcacttcgtt cattttacgc ctaatggagg ctggtcaaca agtcgacgcc      1800
     atttacacgg atctctccgc tgcatttgac aagatgaacc atcaaatcgc agtggccaag      1860
     tttgataagc ttggtatggg aaatagcatg cttctatggc tccaatcgta cctaaccggt      1920
     cggaatatgt ccgtcaaaat tggagatcac gtttcgtcac cctttagagt ctggtccgga      1980
     gttcctcagg gtagtcacct cggtccgttt cttttcctgt tatacatgaa cgatgttaat      2040
     ttcaagctta agtgcctgaa gctttcatac gccgatgact tgaagctgta ttggacgata      2100
     aagcaaccgg aagacgcagt ttttctacaa catgagttgg aagccttcgc tgaatggtgt      2160
     caaataaatc gaatgtcgtt gaacgtgtca aaatgttccg ttatatcatt cagccgcaaa      2220
     catgcacctt tccatttcgg atattttcta gcaggcacgc aacttgagcg cgtatcaaca      2280
     gtcaaagact tgggcattct cctggactca aaaatgacat tcaaagacca cgttgcatat      2340
     gctgtgtcca aagcttcatc tcaactggga ttcctgttcc ggtatgccaa aaagtttcgg      2400
     gatgtgtact gcctaaaggc tttatactgt tcgatagtgc gccctactct ggaatattcg      2460
     tcaataatct ggtctccgta ctatcagaat ggaatcaaac gtgttgaggc tattcaacgc      2520
     aaattcgtcc gctttgctct acgccacctc agatggagag atccgcttaa cctgcccagc      2580
     tatggtagcc gatgtcagct aatcaaattg gagtcactgg tgtcgagacg caacgtagcc      2640
     aaagcctgct ttgttggaga tctcctgcaa ggcaacatcg actgctccac actgctcagc      2700
     tgcttggaca tcaacgtacg acgccgcaat ctwcgaactc attcgttcat caacatacct      2760
     tctgccagaa caaactacgg tttacaggaa ccgatgcgta gcatgtcccg agtattcaat      2820
     atgtgttatc atgtttttga ttttaatgtg tcgcgcgaaa caaataagtc tagttaccgt      2880
     cgagttttgt gctaattttt gtaatcttgg tttgaatatt ttagtgtttg tattttgttt      2940
     aagaaacaag ggtcattggg gtaatgtttt acctgttgac taataaataa ataaataaa       2999
//
ID   CR1-10_AG   repbase;    DNA;    INV; 3448 BP.
XX
AC   NT_078268.2;
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-MAR-2009 (Rel. 14.02, Last updated, Version 2)
XX
DE   CR1-like non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-10_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3448
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 636-636 (2009).
XX
DR   EMBL/GenBank/DDBJ; NT_078268.2; Positions 1489876 1493323.
XX
CC   It is likely to be 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3195
FT                 /product="CR1-10_AG_1p"
FT                 /translation="SPRIPRIFGLQCSPGFSSTTAAAIPSQAINRCDPRTR
FT                 ITSVYPYRFSAANFPPVDEPAATTAQSNSTSTPITPLHHAAERFETLPSVA
FT                 SPITVSAPLPLHASFPHPIDDLRFYYQNTRGLRTKLDDLRLASADTEYHVL
FT                 ILTETWLSENIPSSLAFDNNFVIYRCDRNSRNSSRSRGGGTLIAVSRKLAA
FT                 CEISPASDSLEQCWIRLKLPSCSLFIGSIYLPPTLSADASTLNTLDASIDE
FT                 IISRMKKNDRLLLFGDFNIPSITWHASPDPAPPFLPLLVPASSAHSSSLFI
FT                 DIVRYHSLSQLSSVSNFRQVQLDLIFTFPKNQSNATSTCTYVSQAPVPILQ
FT                 IDPHHPPLELSLKITGSLTPSNRSQHSSSRLTTAPSLDFRKTDFNLLNTSL
FT                 SNIDWSQLYSCKDVNLAVSTFTSLFLSTLPQCCPKRNPPRSPPWSDATLKS
FT                 LKRDKSRYQRAYWSTRSVNALRTYKYAAAAYRLYNRTRYNGYILILQTRLR
FT                 WYPRAFWKFMNARRKGSSLPSTMHLESVYASSPEDICSLFRNHFSNIFSPP
FT                 SQIPNTASQCLSYTPQDVIDVSCFGFDEHSVSEALSKLKPSFSAGPDGIPP
FT                 SLLKKTAEVIAPLLSFIFNLSLRLCCFPSSWKSGWLCPIFKKGNSADVSNY
FT                 RGIVLLPACSKVFEIAVHSVISFQVKSWISVNQHGFMPSRSTVTNLMQFAS
FT                 HVIPSLDSGLQVDTIYTDFKAAFDTVPHHLLLLKLKKLGFSNMLIDWLYSF
FT                 LNSRSIRVKTDTTFSSSFCPSSGVPQGSVLSPLLFVLFVSDVHAILPSEGH
FT                 LLYADDLKIYLTISTHSDCLRLQEFLNSFSLWCSYNQLSLCPEKCSVISFC
FT                 HNRNPIHYEYSLSNSVLSRTSLIRDLGVLWDDKLSLNEHLESVVASASRTL
FT                 GLICRLTRDFRDPLCLKSLYCSLVRSTLEYASVVVGPVRSGWILRFEKVQK
FT                 RFTRFAFRRMAGPNAAMPSYESRCNLLGLESLEVRRSQARVLFIGRMLNGL
FT                 IDAPTLLEKIGLYAPSRNLRARSALNMVSRQTTFGSNEPLLLCVRTFNTST
FT                 DPPHPRL*"
XX
SQ   Sequence 3448 BP; 812 A; 981 C; 599 G; 1056 T; 0 other;
     tcacctcgca ttccgcgaat ttttggacta caatgctcgc cgggattttc atcaaccacc        60
     gctgccgcca tcccgtccca ggcaatcaac agatgcgacc caagaacacg aatcacttcc       120
     gtctatccgt accgattcag cgccgccaac ttcccccctg ttgacgaacc agcagcgaca       180
     actgcgcagt caaacagcac ctctacgcca ataacccctc tccatcatgc tgctgagcgc       240
     ttcgaaactt taccttcggt cgcttcacct attacggtta gtgccccgct acccttacac       300
     gcatcattcc cgcatcctat cgatgatcta cggttctact accaaaatac ccgtggctta       360
     aggaccaagc tagacgatct cagactcgct tcagctgata cagaatacca tgtactcatt       420
     ctcaccgaaa catggctctc tgagaacatt ccctcatctc tagcatttga taacaacttc       480
     gttatatacc gatgcgatcg caattctcgc aacagctcac gctctcgcgg cgggggcact       540
     ctcatcgctg tgtcccgaaa gctcgcagcc tgtgagattt ctccagcttc cgattcgctc       600
     gagcagtgct ggatacgttt aaaactccca tcctgctctc tcttcatcgg atctatctat       660
     ctgccgccta ctctcagcgc cgatgccagc acgctcaaca cgttagatgc atcgatcgac       720
     gaaatcatct cgcgcatgaa gaaaaatgat cgtttactgc tgttcggtga tttcaacatt       780
     ccatctatta cctggcacgc gtcaccggac ccagctcccc ccttcttgcc gctcttagtt       840
     cctgcctcat cagctcattc ttcaagttta ttcatcgata tcgtgcgtta ccacagcctt       900
     agtcagctta gtagtgtcag taatttcaga caggttcagc ttgatctaat ttttactttc       960
     cctaaaaatc agtctaatgc aacgtctaca tgtacatacg tctcgcaagc tccagttccc      1020
     atcctacaga tagaccctca ccaccccccg ctggaactgt ctcttaaaat cacaggttca      1080
     cttaccccca gtaatcgttc tcagcatagc tcttctcgtt taactaccgc cccctcgctc      1140
     gattttagaa aaactgattt taacctatta aatacttctc tttctaatat agattggtca      1200
     caactttact cttgtaaaga tgtaaatttg gccgtttcta ctttcacatc cctcttttta      1260
     tccacactcc cgcaatgttg tcccaagcgc aatccccctc gttcccctcc ctggtctgat      1320
     gctaccttaa agtccctgaa gcgtgacaaa tcccgctacc aacgtgcata ctggagtacc      1380
     cgttctgtta atgctcttag aacttacaaa tatgcagctg ccgcatatcg actttataac      1440
     cgcactcgct acaatggtta tattcttatc cttcagacgc gcctccgctg gtacccccgt      1500
     gccttctgga aatttatgaa tgctcgacgc aaaggcagct ctctcccgag cactatgcat      1560
     ttagagtccg tatacgcctc atcgccggag gatatttgct cgctttttcg caaccatttc      1620
     tcgaatattt ttagccctcc ctcgcaaata cccaataccg catctcaatg tctttcgtat      1680
     accccccaag atgtgattga tgtgtcctgc tttggcttcg atgaacactc tgtctcagaa      1740
     gctctttcaa aactaaaacc ttctttctct gcaggccctg acggaattcc tccctcactt      1800
     ttgaaaaaaa cggctgaggt gatagcccct cttttgtcat tcattttcaa tctatccctg      1860
     cgcctctgct gcttcccttc ttcatggaaa tcgggctggc tttgtcccat cttcaagaaa      1920
     gggaattccg ctgacgtgtc aaactaccgt ggcattgttc tgctaccggc ttgtagcaaa      1980
     gttttcgaaa ttgcagttca ctccgtaatt tctttccagg taaaaagctg gatcagcgtg      2040
     aaccaacatg ggttcatgcc aagccgctcg acggtcacga atttaatgca attcgcgtct      2100
     cacgtcatac cctcgcttga ttctggtttg caagtagaca cgatctacac ggatttcaag      2160
     gccgcctttg ataccgttcc ccaccacctt ctgctgttaa aactaaaaaa acttggtttt      2220
     tctaatatgt taattgactg gctttattct tttttaaaca gcaggtccat tcgtgtaaaa      2280
     accgacacta ccttttcttc gtccttttgt ccctcctctg gagtgccaca aggcagcgtc      2340
     ttgagcccac tcttattcgt actttttgtc agtgatgttc atgcaattct cccgtccgaa      2400
     ggtcatttac tgtatgctga tgatttaaaa atatatttaa ctatcagtac gcacagcgac      2460
     tgccttcggc tccaggagtt tctgaactca ttctctttat ggtgctccta caaccagcta      2520
     agtctttgcc ctgaaaaatg ctctgtaata tccttctgtc ataaccgcaa ccctatccat      2580
     tacgaatatt cgctctccaa ttctgtgctg tctcgaacct cccttatacg tgatcttggc      2640
     gtcctttggg atgataaatt atcactaaac gaacatttag agtcggttgt cgcaagtgct      2700
     tctagaacgc tgggtcttat atgtagactt accagagatt ttcgtgatcc actttgcctc      2760
     aagtcacttt attgttcttt agttagatca acattggaat acgcttcagt ggtcgttggt      2820
     ccagtccgtt ctggatggat cttaagattt gaaaaggtcc aaaagcgttt cactaggttc      2880
     gcttttcgac gaatggctgg ccccaatgcc gctatgccca gctacgaatc tcgctgcaat      2940
     ttacttggtc tggaatccct ggaagtaaga cgctcccaag cgcgcgtcct tttcatcgga      3000
     cgcatgctca atgggcttat tgatgctccc actctccttg agaagattgg cttgtacgca      3060
     ccctccagaa atttaagggc acgtagcgca ctaaacatgg tttctcgaca aaccacattt      3120
     ggttccaacg agcctcttct cctgtgtgtt cgcactttta atactagcac agatcctcct      3180
     cacccccgtt tataatcctt tataatcctt ttccctgata ctcttcccta tcctcttttt      3240
     tctcatcctc ttttttccga ctatcatatc taatattatt cactcttctt ttcttacgtt      3300
     tgtattttat cctaatatct gtctttcatg tgctcaaaag ttcgctttag tattaggaat      3360
     ttagataggt taagttagga attagttaga tttaggaatt gtgaaaccat caggctgaca      3420
     atttgaataa acttgaaatg aaatgaaa                                         3448
//
ID   CR1-10_CQ   repbase;    DNA;    INV; 2168 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2168
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 12-12 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2105
FT                 /product="CR1-10_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="RRADFESLSRALRGIEWSSVLDPVDIDLAVDTYTXIL
FT                 GRLIEQFVPKIRKVVSHHLPWQTQELRXLKTQKRAAFKVSNGSVHLRDYYL
FT                 RINHSYQRLSRRCFANYQRKMQKKLKTDPKKFWKFVNESRRESGLPTSMRL
FT                 ADXEGDDADKICQLFAKKFAGVFCAEPITDEEVRAAAENVPRRDELLASIE
FT                 IDEGTIQAAAAKLKHSCSPGPDGIPSTLLKRCSSSLSAPLLHLFRLSLSSG
FT                 KFPVAWKQAYMFPVHKKGDRTNVENYRGISALCATSKLLELVVIDPVFSHC
FT                 RQDLADEQHGFFPKRSTATNLLCFTESIINSFDAHSQTDAIYTDLSAAFDK
FT                 INHRIAVAKLERLGFRGSLLAWFKSYLTGRSLRVRIGDALSDIIDATSGIA
FT                 QGSHLGPVVFLFYFNDVNYTVTGPRLVYADDLKLFARIDNSNDAEALQRDL
FT                 DRFAGWCXVNRMILNPGKCQXITFSRRHFPVTFDYRINDTSVERVTHVKDL
FT                 GVILDTQLTFKQHLSYIIAKASRQLGLVIRMTRKFTDIYCLKTLYCSLVRS
FT                 TLEYCSTVWSPHYNNAVCRLESIQRRFVRYALRQLPWTNPLXLPPYEQRCR
FT                 LIDLDTLQLRRDLARAMTSADVLLGRIDCPDLRNQIQLRVPTRQLRHTPAL
FT                 EVPFRRTNYSANGAINGLKRAFNKVSSVFSLDVSRTTLRFKFVSLLRSLLR
FT                 M"
XX
SQ   Sequence 2168 BP; 535 A; 586 C; 503 G; 533 T; 11 other;
     tccggcgcgc cgacttcgag agtttgtccc gcgccctacg tggtatcgag tggagcagcg        60
     ttctggaccc tgtagacatc gatttagcag tcgacacgta cacatstatt ctgggmagac       120
     tgattgaaca gtttgtgccg aagattcgga aggtggtctc ccatcacctt ccctggcaaa       180
     cccaagaact wcgccwcctc aagacccaga aaagagctgc cttcaaggtt tccaacggat       240
     ctgtacactt acgcgactac tatcttcgga ttaatcacag ctatcaacga ttgagtcgca       300
     ggtgctttgc aaactaccag cgcaaaatgc agaagaaatt gaaaaccgac ccgaagaaat       360
     tctggaaatt cgtcaacgag agccgtagag aatctggatt gccgacttca atgcggttgg       420
     ctgacgawga aggagatgat gcagacaaaa tttgccagct tttcgcgaag aagtttgccg       480
     gtgtattctg cgcggagcct attactgacg aggaagtccg agccgccgca gaaaacgttc       540
     cacgtcggga tgaactactg gcttcgatcg agattgatga aggtaccatc caagccgctg       600
     cagccaaact aaaacactct tgctcaccag gaccggacgg gataccgtct accctgctga       660
     aacgttgttc ctccagccta tcggcaccac tcttacacct gtttcgtctt tcgttgagct       720
     ctggaaagtt tcctgttgcc tggaagcaag cttacatgtt tccagtgcac aaaaaaggcg       780
     atcgaactaa cgtggagaac taccgtggga tttccgcctt gtgtgccacc tcaaagttgc       840
     tggaattggt tgtgattgat ccggttttct cgcattgccg ccaagacctt gctgatgaac       900
     aacacgggtt ctttcctaag cgatcaacag caaccaatct cctctgcttc accgaatcga       960
     tcatcaacag cttcgacgcc cactctcaaa ccgatgccat ctacacagat ctgtcagccg      1020
     ccttcgacaa aattaaccat cgcatcgctg ttgctaagct tgagagattg ggtttccgag      1080
     gaagcctatt ggcctggttc aagtcttatc taacgggacg ttcgctgagg gtgagaatcg      1140
     gagacgcact ttccgatatc atcgacgcca catcgggtat cgcgcaagga agccacctcg      1200
     gtccggtggt attcctgttt tactttaacg acgttaatta caccgtcact ggacctcgcc      1260
     tcgtttacgc ggatgacctc aagctttttg ctcgaattga caactcgaac gacgccgaag      1320
     cattgcagcg cgatcttgac aggtttgctg gttggtgcga kgtgaaccgc atgatcctca      1380
     accctggaaa atgccaakcg atcacgttca gtcggagaca cttcccagta accttcgact      1440
     accgtattaa tgatacttct gtcgaacggg tcactcacgt gaaggatttg ggagtcatct      1500
     tggacacgca actcactttc aagcagcatc tgtcatacat aatcgccaaa gcctcccgac      1560
     aactaggatt ggtaatccgc atgacgcgca agttcactga catttattgt ctaaagaccc      1620
     tgtactgctc gctggtccgm tccactctag agtactgctc gacagtgtgg tccccgcact      1680
     acaacaacgc tgtttgccgc ctcgaaagca tccaacgaag gtttgtgcga tatgccctca      1740
     ggcagctgcc gtggacaaat cccttgcawc ttccgccgta cgaacaacgc tgccgtttga      1800
     tcgacctcga tacactmcag ctacgacgag acctagcccg tgcgatgact tctgctgatg      1860
     tcctactcgg ccggattgat tgccctgacc tgcgtaacca gattcagctc cgagtgccta      1920
     cccgtcaact acgccacacg ccagctctcg aagttccgtt tcgtcgcacc aactacagcg      1980
     cgaatggtgc catcaacgga ctaaagagag cgtttaacaa agtgtccagt gtgtttagct      2040
     tagatgtgtc tcgtactacg ttgcgtttta agtttgtgtc cttgttaaga tctttgttac      2100
     gcatgtaaat ttagttttaa gtkcatcatt ggggcaaaat aagtgcctgt tgagaagaaa      2160
     taaacaac                                                               2168
//
ID   CR1-10_DTa  repbase;    DNA;    INV; 4645 BP.
XX
AC   .
XX
DT   06-JUL-2012 (Rel. 17.08, Created)
DT   06-JUL-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4645
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1701-1701 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1640..4486
FT                 /product="CR1-10_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="CFNGFKKLXFLIHYQNVRGLLSKLSKLFLDSTTFYAN
FT                 VIAFSETWLNSTVNDSEILSKNYXIYRNDRPCRRGGGVLIAVKSNLTSELI
FT                 NCPNSSSIEFISVKLSLPKSNMLITCSYIPPGSEIDMYLLHLSAIRYVSSL
FT                 ADDNDHLIVLGDFNLPNVSWFQSNDSILMTPRTQNDFIEGLIELSLLQINW
FT                 ISNHNERILDLTFVSDNCDAAVSRVPPLSLPEDNHHPTLQLSLNGVFHSAR
FT                 ASARPQLRFCFRKTNYSQLLHSLSITDWSCLTDVPVADGVAYFYGVLYSLF
FT                 DKYVPLFSGKTPYSSPWFTRQLSYLKNKKSRLFKRFKQTGLQTDFAKYSVV
FT                 KSDYLKHNSECYNNYLARCKNDFKSNPKLFYSFVNAKRKSQSFPPSLFFNS
FT                 AVASDENGISNLFADFFQSTYTNADSSKDFNYPHSLPHLDSIFNPVILEAD
FT                 VLQGLIALKLSFSAGPDMVPSCILKNCANFLSSPLTILFNMSINQCNFPSA
FT                 WKESFIVPLFKKGNRSDIANYRGIAKLSAIPKLFEKLITSQLQHQCRSLIS
FT                 PCQHGFTRCRSTTTNLLEFTSLVNRGFLHKQQTDVIYTDFSKAFDTVNHCV
FT                 LIKKLNLMGFPPKLLAWLLSYLTDRCQRVKYNDITSKTINVTSGVPQGSHL
FT                 GPLLFGLLINDLPQVIKSATVLMFADDVKLCLSMSLPDSCSRLQLDLDYLQ
FT                 TWCKLNNLYLNYSKCNVMTFYRRNPSLYSYSIDSNVLHRISTIQDLGVLFE
FT                 HKLCFNDHISLICNKARSLLAFTKRWSKEFDDPYTTKLLYVSLVRPSLEYC
FT                 SCIWSPQTLTCQNMLESVQKQFLLFALRGFNWDAGRRLPSYNARLRLLDMP
FT                 TLINRRICHGVMFIHKLINGDVDSSFLLSSLNWNVPCRTIRRYRPLSLPFC
FT                 RTNFALNDPFRVLCEKYNDLSHVLLYGVSSVSNYNKLLLLLSSNM"
FT   CDS           join(638..982,960..1661)
FT                 /product="CR1-10_DTa_1p"
FT                 /note="RING-finger domain."
FT                 /translation="MTLCCASSCAFNNKITARQPLVCCWICDNLAHPICVE
FT                 LGRSSGQIVDKLKLRVGLNWTCPSCRHIEVDMKSFMRQTHLEFQALSTGFR
FT                 ELYDKFNAAESHFKNLKMLSVPQCSNTVFPNVLTRDNCSLPNNNLTVPESA
FT                 ALMRLSPISRKLMDFNRAAPHLSAEDESLDSDAIPHPSSQTEVRGDLDPGV
FT                 CDHADAGEREGASADIDHMAAGTSLAAQTVAPVMALLAIPRRPSTVPSSAP
FT                 VTLAALAPKKCIFVSRLLASATENDVRHHIVTRLSLTDPSAVGITKFNFKL
FT                 KRDYSSFKIHVPDGLFSKIICSSFWPENTIVHEYLKKDNSTVRTSAASRNV
FT                 STVSKN"
XX
SQ   Sequence 4645 BP; 1168 A; 1045 C; 854 G; 1575 T; 3 other;
     ttctagtatt cggacgtgtt tttcgacgct cctccttcac atcgtgtttt tcctgtgaaa        60
     acctattccg ttctaatcag attttgaaca ttttgtcagt aaccctgcaa tcttgtttaa       120
     ttcgtgccat tcggttaatc taaatggaca gtgactttac tatttgcaaa attaatttgt       180
     aaacaaaata tttttgctac tgctctgttt tgccagcgtt accgcaaaac ccatagtttg       240
     tgttgttgtt gaaacgactc tctctgtgtc tgccgcgaac atccacgaga acctactctg       300
     tgttgccagc ggtaccgcta agcctatagt ttgtgttgtt ggtttgtaac cactctccct       360
     gtgtttacgc gaacgtgcaa tcggtgcatt tcgctctgtg cggttcttca gcgcctatca       420
     gtccgctctc tgcccgactc ccgcgctgct cttcgactgc tgtatccgac tgctctttgc       480
     tctgccctgt tgctgctgct ctgctctgcc ctgccgctgc tgcgctgttc tgccctgctg       540
     ttgctgtgct gctctgcctg gctgctacgc tgatcttcga tcgcttgcat cggactgctc       600
     tttgccttgc tgctgctatt tacgctgtta aatcaagatg actttgtgtt gcgcttcttc       660
     gtgtgcgttt aacaacaaaa ttaccgctcg tcaaccgttg gtttgttgct ggatctgcga       720
     caacttggcg caccctatct gtgttgagct ggggcgctca agcggccaaa tcgtagacaa       780
     gctaaagcta cgggttggcc ttaactggac gtgtccgagc tgtagacaca tcgaagtaga       840
     catgaaatcg tttatgcggc aaacccatct ggagttccaa gctctgtcaa ctggatttcg       900
     tgagctttat gataagttca atgccgcgga atcccacttt aaaaatctta aaatgctaag       960
     tgttccccaa tgttctaaca cgtgataatt gctccttacc taataacaat ttaactgttc      1020
     cagagtctgc cgcccttatg cgattgagcc ctatttcaag gaaattgatg gacttcaatc      1080
     gagctgctcc ccacctctcg gccgaggatg aatcgctcga ttcagacgca attcctcacc      1140
     cctcttccca gacggaagtt cggggcgatt tggatccagg cgtttgtgat catgctgatg      1200
     ctggcgagag ggaaggggca tccgctgata tcgaccatat ggctgctgga acttcattgg      1260
     ctgcacaaac cgttgcccct gtgatggctc tgctggctat tccccgacgt ccatccactg      1320
     ttccatcttc tgcacccgtt actctggcgg ccttggctcc aaaaaagtgt atctttgtgt      1380
     cgagactgtt agcttctgca accgagaatg atgtgagaca tcatattgtc acgagactct      1440
     cccttaccga tcccagtgct gtcggcatca ccaaatttaa ttttaaactc aaaagggatt      1500
     actcttcctt taaaattcat gttccggatg ggctgtttag taaaattatt tgttcgagtt      1560
     tttggccaga aaatactatt gtgcatgagt acttgaaaaa agacaattcc acagttagaa      1620
     cctctgctgc ttcgcgtaat gtttcaacgg tttcaaaaaa ctagawttct tgattcacta      1680
     tcaaaatgtt cgaggtttgc taagtaagct ctccaaacta tttctagata gtactacttt      1740
     ttatgcaaat gttattgctt tctccgaaac ctggcttaac tcgactgtaa atgatagtga      1800
     aatcttgtct aaaaactack ttatttatag aaatgatcgt ccgtgtcgtc gtggtggtgg      1860
     ggtccttatt gcggttaaat ccaacttgac ttcagagctt attaactgtc ctaactcctc      1920
     aagtattgaa tttatttctg tcaaactctc ccttccaaag tctaatatgt tgattacctg      1980
     ctcttacata cctccagggt ctgaaataga catgtattta ctccacctgt ctgcaatacg      2040
     ttatgtatct tcgttggctg acgataatga tcaccttatt gttcttggtg actttaatct      2100
     cccaaatgtc tcttggttcc agagtaatga ctcgatatta atgactccca gaactcaaaa      2160
     tgactttatt gaaggcctca ttgaactatc tttgcttcag ataaattgga tttccaatca      2220
     caatgaacga attttagact tgacttttgt atctgataac tgcgacgccg ctgtgtctcg      2280
     tgttcctcct ctatctctcc ctgaagataa tcatcatcct accctccagt tatctttaaa      2340
     tggtgttttc cactctgcga gagcttcagc aaggccacag ctaagatttt gctttagaaa      2400
     aactaattat tcgcagcttt tgcattcgtt atctataact gattggtcat gcctaacaga      2460
     tgtccctgtt gcggatggtg tggcgtattt ctatggtgtc ctttatagtt tgtttgataa      2520
     atatgtaccc ctttttagtg gtaaaactcc ttacagctct ccgtggttta ctcgtcagct      2580
     ttcttatctt aagaataaaa aatccagact ctttaaacga ttcaaacaaa ctggcttgca      2640
     gacggacttt gccaaatatt cggtagtcaa atcagactac ttaaagcata attctgaatg      2700
     ctacaataac tatctagctc gctgtaaaaa tgactttaaa agtaatccaa aactatttta      2760
     ttcatttgtg aatgccaaac gaaagtctca atcctttcct ccctccttgt tttttaattc      2820
     tgctgttgct tccgatgaaa atggtatttc taatttattt gctgattttt tccaatcaac      2880
     ttataccaat gctgacagta gtaaagattt taactatcct cattctctac ctcatctgga      2940
     ctcaatcttt aatccggtta ttctcgaagc cgatgttctc cagggcttaa tcgctttgaa      3000
     actctccttt tcagcaggac cagatatggt tcctagctgt attttaaaaa attgtgcaaa      3060
     ttttctttcc agtcctctaa caatcctttt taatatgtct ataaatcaat gtaattttcc      3120
     atccgcttgg aaggaatctt tcattgttcc gctgtttaaa aaaggtaata ggtccgatat      3180
     tgctaactat cgggggattg caaagctcag tgctattcct aaattattcg aaaaattaat      3240
     aactagtcaa ttgcagcatc aatgtmggtc gcttatttcg ccatgtcaac atggcttcac      3300
     caggtgccga tctactacca ccaatttgct tgagtttacc tcattagtaa accgtggctt      3360
     tctccataag caacaaacag atgttattta tacggatttt tccaaagcat ttgacacggt      3420
     aaaccactgc gtacttataa aaaaacttaa tcttatgggg ttccctccaa agttgttagc      3480
     gtggttactt tcatacctca cagaccgctg tcagagggtg aaatataatg atataacgtc      3540
     caaaactata aatgttacct ctggtgtacc tcaaggaagt catttgggac ccttattatt      3600
     tggcttgttg attaacgact tacctcaagt tattaagtcc gcaactgttt taatgtttgc      3660
     tgacgacgtt aaactgtgtt tgtctatgtc attaccggat tcttgttctc gtcttcaatt      3720
     agatcttgac tatttacaga cttggtgcaa actcaataat ttatatctta actattctaa      3780
     atgtaatgtt atgacctttt atcgtcgtaa tccgtctttg tattcgtact ccattgacag      3840
     caatgtcctt caccgtattt ctactataca agacctggga gttttatttg agcataaact      3900
     ttgttttaat gatcacatat cactaatttg taataaagct aggagccttt tagcctttac      3960
     gaagcgttgg tctaaggagt ttgatgaccc gtatacaacc aagcttttat atgtatctct      4020
     tgttcgccca tcgttagagt attgttcatg tatatggtca ccgcagacgt taacttgcca      4080
     aaatatgtta gagtccgttc aaaagcagtt tttgttattt gctctaagag gttttaactg      4140
     ggacgctggc cgtcggttgc catcctataa tgccagattg cgtttactag acatgcccac      4200
     cctgatcaac cgtaggattt gtcacggtgt tatgtttata cacaagttaa taaatggtga      4260
     tgtcgactcc tcctttctcc ttagttccct aaactggaat gtgccatgca ggacaattcg      4320
     ccggtatcgg cctttgtctc tgccattttg caggacaaat tttgccctta atgacccttt      4380
     ccgtgttctt tgtgaaaaat ataatgatct cagtcacgtc ttgttgtatg gagtctcttc      4440
     agtgtctaat tataataagt tattattgtt attgtcctca aatatgtaat tcaacgtgcc      4500
     taccactcga tgtgagcagg ggcatatcgc taaaaaattc cccttatgtg gtttggcgtt      4560
     ctagttctta aatacaaaat attataaatg ttttacaagc agtccattgc ttaataaaat      4620
     acaatacaat acaatacaat acaat                                            4645
//
ID   CR1-110_AAe repbase;    DNA;    INV; 4532 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-110_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4532
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1198-1198 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..1374
FT                 /product="CR1-110_AAe_1p"
FT                 /translation="MNCEICALDASADSVLWTCAGCPRKFHAACIGVTVQR
FT                 SSLRRKDRKLIDFTSYVLPCCESCQELVQAKLDIKKLNEEHKLLTEQLHAN
FT                 TEVLHRFNLNNEKPSIINEAFEGLEILMSAIKNELAIINKSSSLAGSVATI
FT                 KNHITTVLDIVAQKNNDYLTNTLTSFKSDVSTELRNINDDLCQINQLQLDM
FT                 AATTSASMNPNLFVDIVDELKAWSANILSTKSIEPLTHEAYPSLEVEMEKS
FT                 EDTSGWRLLGDKKIWKADWTSYDARKMHRERQQKLAEKAKQKRKRRNRLPQ
FT                 NTQQPARSKYMNKSHPRPTTVNGRNYNEPSYNRCSIIHQRNTSRNCYNRSN
FT                 TNAAGDIDFRTNTPLLDRELLAAAKERFSRPPPTSYRPTIAFQRGEVLNPY
FT                 PSDRQPNTPHRTNAAPARLNGRCSCQCFCQN"
FT   CDS           1287..4457
FT                 /product="CR1-110_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RQTTEYATPNKCRTSTFEWKVLLPVFLPELTHFTEEG
FT                 NISILTRNECIANNLGYDEGSNDCGNHSSCDRNCINLNDEHLNESDNARHD
FT                 VDLPKASEALVYCQNFNRMRGSSKIKQIHKNILASSFSIILGTETSWDESI
FT                 KSEEVFGCDYNVFRDDRDFLMSQRKSGGGVLIAVSSKFNSEIICSSKFKEF
FT                 EHVWVKVNIENEKHVFASVYFPPDHANKHAYDSFFKNAEDIISGLPPEVKV
FT                 HIYGDFNQRNADFIPDFENEGIMLPVVGENETLQLIFDKIAILGLNQINHV
FT                 KNRQNCYLDFLLTNIQEDFYVTESIAPLWKNEAFHTALEYSLFIHNNCRPT
FT                 VCEYEDIYEYDNANYENIKNRINLIDWQSLIREENNVEKAVDIFYSLLMEI
FT                 IREEVPLKRKKLFGNSKNPIWFNRNIRNLKNRKQKAHKIYKKHGSDDNMQK
FT                 YLDLCEQLNIAINSALEEYNRKIESDIKSCPRSFFNYTKTKLKSNNLPSKM
FT                 QLDDKDANNPEEICHLFSTFFQEIYTTFSEEDRDQNYFSFFPAPSNDISVH
FT                 QISVQDILSGLKGLDATKSAGPDEIPPVFMKKLAVELTSPLFWLFNMSLKS
FT                 GKFPKIWKKSFLVPIYKSGKKTDIRNYRGIAIISCIPKLFESIVNRKLFGQ
FT                 LRNRITNAQHGFFKGRSTSTNLLEFTNYTLNAMDNGNYVEALYTDFSKAFD
FT                 RIDISMLLFKLEKIGFDKPSLNWIQSYLTNRQQIVRYNGKKSNPIQVTSGV
FT                 PQGSHLGPLLFILYVNDISYILKHINILIYADDMKLFMEIKYANDIDIYLS
FT                 EISIFDEWCSKSLLQLNVKKCNLITFSRKRNTEETTVVLGNQIVEKCDRVR
FT                 DLGVILDSKLTFIDHYNTIIHKATNMLGFIKRFGSNFNDPYTIKTLYVAYV
FT                 RSILEYCSIVWSPFMKTHEERLESVQKQFLLYALRKLGWTSFPLPSYESRC
FT                 MLIDIQTLKKRREFAMVSFVNDIVSHRIDSPNLLNSLNFYTPSRQLRNRNL
FT                 FFINHRRTNYAKFSPLNRMMSLYNQHCETIDLTMSRSNLRIYFNSVRYSSI
FT                 "
XX
SQ   Sequence 4532 BP; 1587 A; 818 C; 813 G; 1314 T; 0 other;
     ttgcatttta atcgtcaatc aaagtagacg tgttttttat tcgctgaaac ccgcgcgcga        60
     ctcgattttg ttttaattat tctatttttt gcgtacgtca tgaactgcga aatttgtgct       120
     ttggacgctt ctgccgactc ggtattgtgg acatgtgcgg ggtgtccacg taaattccac       180
     gccgcgtgta tcggtgttac ggtgcagcgg agttcattga ggaggaaaga tagaaaattg       240
     attgacttca cctcatatgt tttgccttgc tgtgagtctt gccaagaact cgtacaagca       300
     aaattggaca taaaaaagct gaatgaagag cataaacttc taacagagca gctccatgct       360
     aatacagaag tgttgcatcg cttcaattta aataatgaaa aaccaagcat aatcaacgaa       420
     gcttttgaag gacttgagat tctgatgtct gcaataaaaa atgagctggc tattattaac       480
     aagtcaagta gcttggctgg aagcgttgca actataaaaa atcacataac gacggttctt       540
     gacatagttg cccagaaaaa caatgattat ttgacaaata cgttaacatc atttaagtcc       600
     gatgtatcca ctgagctgcg gaacataaat gacgatctat gtcaaataaa tcagctgcaa       660
     ttggacatgg ccgccacaac gtctgcaagt atgaacccaa atttatttgt ggatattgtc       720
     gacgagctga aagcatggtc agcaaacata ttgtctacaa aaagcattga accgttgaca       780
     catgaggcgt atcctagttt agaagttgaa atggaaaagt ccgaagatac ttcaggatgg       840
     cgtttattag gtgacaaaaa aatatggaag gccgattgga cttcatatga tgcgcgcaaa       900
     atgcatcgcg agcggcagca aaaactggct gaaaaggcca agcaaaaacg taaaaggcga       960
     aacagattgc cacaaaacac acaacaaccc gcaaggagta aatatatgaa taaaagtcac      1020
     ccgcgtccaa ccaccgttaa tggaagaaac tacaatgagc cgagctacaa cagatgttcc      1080
     atcatccatc agagaaatac cagtaggaac tgttacaacc gtagcaatac taatgccgca      1140
     ggagatattg acttcagaac aaatactcct cttctagaca gagaattact agcagcagcg      1200
     aaggaaagat tttcgagacc acctcccact tcgtatcgtc caaccatagc attccagaga      1260
     ggagaagtgc tgaacccgta ccctagcgac agacaaccga atacgccaca ccgaacaaat      1320
     gccgcaccag cacgtttgaa tggaaggtgc tcctgccagt gtttttgcca gaattgacgc      1380
     acttcacaga ggaaggtaat attagtatct taacacgcaa tgaatgtatt gctaataatt      1440
     taggctatga cgaaggctca aatgactgcg gcaaccattc gagttgtgat aggaattgta      1500
     taaatttaaa tgatgaacac ttaaatgaat ctgataatgc aaggcatgat gtagaccttc      1560
     caaaagcttc cgaggctctt gtttattgtc agaatttcaa tcgtatgaga ggatcttcaa      1620
     aaatcaagca aatccataaa aacatattag cgtcatcttt ttcgatcata ttaggcacag      1680
     aaacaagttg ggacgaatct ataaaaagcg aagaagtttt cggatgtgat tataacgttt      1740
     ttagagacga tcgcgatttt cttatgtcac aaagaaaatc aggaggaggg gtcctcattg      1800
     cagtctcttc aaaatttaat tctgaaatta tttgttcttc gaaattcaaa gagtttgaac      1860
     atgtttgggt gaaagtaaat atagaaaacg aaaaacatgt atttgcatca gtgtactttc      1920
     cacctgatca tgccaacaaa catgcttacg actccttttt caaaaatgct gaagatatca      1980
     tatctggtct tccccctgag gtgaaagtac acatatatgg tgacttcaac caacgcaatg      2040
     ctgacttcat tcctgatttt gaaaatgagg gcatcatgct tccagtggtc ggggaaaatg      2100
     aaacgttaca attaattttc gacaaaattg caattttggg cttgaaccaa attaatcatg      2160
     taaaaaatcg gcaaaattgt taccttgact ttctattgac aaacatccaa gaagatttct      2220
     acgttactga aagtattgca cccttgtgga aaaatgaagc atttcataca gcactggaat      2280
     actcattatt tattcacaat aactgcagac ccacagtgtg cgaatatgag gatatctatg      2340
     aatacgataa tgcaaattat gaaaacataa aaaatagaat aaacttaatt gactggcaat      2400
     cactgatcag agaagaaaat aatgtcgaaa aagctgttga tatattttac agtttactaa      2460
     tggaaattat tcgtgaagag gtacctctga aaaggaaaaa actttttggt aattcaaaaa      2520
     atcccatctg gttcaataga aatatcagga atttaaaaaa tcgaaagcaa aaggctcaca      2580
     aaatttataa aaaacatgga agtgatgata atatgcagaa atacctggac ttatgtgaac      2640
     agttgaacat tgctataaat tctgcacttg aagagtataa tagaaaaatt gagagcgata      2700
     taaagtcatg cccaagaagt ttctttaatt atactaaaac aaaattaaaa tcaaacaatc      2760
     taccatcaaa aatgcaactt gacgataaag acgctaacaa cccggaagaa atttgccacc      2820
     tcttttcaac gtttttccaa gaaatctata cgacattttc agaagaggat cgggaccaaa      2880
     attatttttc attcttccct gccccctcaa atgacattag tgtgcaccag ataagtgtac      2940
     aagacatctt atcaggcttg aaaggattgg atgccacaaa aagtgcagga cctgatgaaa      3000
     tccctccagt atttatgaag aagcttgctg ttgaattaac atctcctttg ttttggctgt      3060
     tcaatatgtc actaaaatcc ggcaaatttc ctaaaatctg gaagaaatca ttcttagtac      3120
     ctatttacaa atcagggaag aaaactgata ttcgtaatta tcgtggaatt gctataattt      3180
     cctgtattcc aaagctcttt gaatccattg ttaatagaaa attgtttggg caattaagga      3240
     acagaattac aaatgcacaa catggatttt ttaaaggccg ttccacttct acaaatttac      3300
     tagaattcac caattatact ttgaatgcta tggacaatgg taactatgta gaggctctgt      3360
     atactgattt cagcaaagca tttgaccgca ttgatatctc tatgttactc ttcaagttag      3420
     aaaaaatagg atttgataaa ccatctttaa actggataca atcatattta acaaatcggc      3480
     aacaaatagt gagatataat ggtaaaaaat cgaatcctat ccaagttaca tcaggagttc      3540
     ctcaaggctc acatctagga cctcttcttt tcatattata tgtaaatgat atttcctaca      3600
     ttcttaagca tataaatatt cttatctatg ccgacgatat gaagttattc atggaaatca      3660
     agtatgctaa cgacattgac atctatctga gtgaaatatc tatttttgat gaatggtgta      3720
     gtaaaagcct acttcagtta aatgttaaaa aatgtaattt aattactttt agcagaaagc      3780
     gaaacacaga agaaacaact gtagttttag gaaatcaaat cgttgaaaaa tgcgataggg      3840
     tcagagattt aggcgtaatt ttagactcaa aactcacttt tatcgatcat tacaacacca      3900
     ttatacataa agcaacaaat atgcttggtt ttatcaaacg ctttggttct aactttaatg      3960
     atccatacac tattaaaact ttgtacgtcg cttacgtgag gtctatatta gagtattgta      4020
     gtattgtatg gtctcctttt atgaagacgc atgaagaacg tcttgaatca gttcaaaagc      4080
     aatttctgtt atatgctctt cgtaaattgg gctggacatc cttccctctt ccatcttatg      4140
     aatcaagatg catgctcatt gatattcaga cattgaaaaa gcgccgcgaa ttcgctatgg      4200
     tttcattcgt gaacgatatt gtttcgcatc gtattgattc tcctaaccta ttaaacagtt      4260
     taaattttta tactccttcc cggcaattga ggaatcgtaa cttgtttttt attaatcacc      4320
     gtcgtactaa ttatgcaaaa ttttctcctc taaaccgaat gatgagttta tataatcaac      4380
     attgcgaaac aatagactta acaatgtcgc gtagtaacct aagaatatac tttaactctg      4440
     taagatatag cagtatatag atttaagtgt taacatgtag tctactttga ttgacgataa      4500
     taaataaata aataaataaa taaataaata aa                                    4532
//
ID   CR1-111_AAe repbase;    DNA;    INV; 5034 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-111_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5034
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1199-1199 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..1306
FT                 /product="CR1-111_AAe_1p"
FT                 /translation="MESCQACSKSLDSDRVVTCSGSCGMTFHFICVGLSKS
FT                 QYACWTSKVGMFWFCTSCRLNFEPAVYERDKIMLKALRELLIRTDAMDTRL
FT                 GNCGENLRKFTKILHGGNQSKSSNCSNLQTTLLQSIDEMTLDDVVDDPINR
FT                 SRSCDETSFFEVLDEVNSSIAMAPDRFVVRGNKRVQIVESTSRMNASTPAA
FT                 LPHVSKCLPPDTICAPPSRSSPNIHSIGNNTRSPSGRTLKPNNSFLKVANG
FT                 ALQAIDDECYYVTPFTPDQTEDDIKLHVCDITNADPSVVKVTKLVPRGKKL
FT                 EELSFVSFKISVCRSYSGVVSDSWYWPEGITIRPFEPNSKNEIPARLPKSM
FT                 Q"
FT   CDS           1258..4962
FT                 /product="CR1-111_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TKLKKRNPCTASEIYAIEQRQISSEIATADECQSSPS
FT                 PGRTESSTLEALEPPITVLTIQPAIIRRPGPVFGTGERVFQPVLSGKYSRL
FT                 EENIRSEELFHNSPSEIFVSTFDVSANIPGRTIYSTLEAPEPPITVVTTQP
FT                 AIIRRPGPVFGTGEGVFQPVLSGKYLQLRNTICSENVFVRSVDDPHHSTGF
FT                 PIPGCTPASPSEAPYPLVTVEPILPAASSHPGPVYERGEGVFQTPIAGKYT
FT                 NDQNNMLPVISIASSSFASHPTFNELTEPPGASSIVPVNASTTHHHLALYY
FT                 QNVRGLRTKIAHLRLLLSSCDYDVIVFTETWLCAGIENREITSEYTIFRCD
FT                 RNELNSRHSRGGGVLIAVKNNLPCDTIHIPNCENLEQIAVRIKLRERFLYI
FT                 TAIYIPPNSSPDVYSAHANAMQFVTDLASVFDVVMSIGDFNLPNLHWQLDS
FT                 DTNGYIPSNMSTEHERNLVESLFAMGLRQVNRFTNTNRKLLDLVFVNLPEH
FT                 VDMILPPSALLRLDNHHVPYILLLEELEANPAMPAQEDWAFDFHACDYRQL
FT                 NNVLADIDWDSEFDNRPLEEILPLFYDRLNAVINDHVPKRLRRSSSSFNKP
FT                 WWTLELRNLRNSLRKSRKHFFRTRSENDRSTLREMETSYKVLLSSTYCNYI
FT                 SRIQANVKEDPRRFWNFVNHQKTCNGIPSTVNYNGVFAHSNLEAANLFATF
FT                 FESVYNKVAPVQRHNSFAHVDVCDITLTATEFVPDETREALGELDPDKSAG
FT                 TDGIPPLLLKNCAASLAKPITKIFNCTIRERAFPSVWKTARIVPIFKSGTC
FT                 SNVSNYRGISILCSLSKVLEKMMHNVLYNVARPFITDTQHGFMKHRSTTSN
FT                 LMCYTTRLSTELAARRQVDSIYIDFAKAFDTVPHVLIVEKMKYIGFPAWIA
FT                 QWIFSYLTDREAFVVVNNVRSRTFAITSGVPQGSVLGPLLFNIFVNDLGNL
FT                 ISSSKLSFADDLKLFRVILSEADCEALQEDINNVLIWCDNNGMNVNSKKCK
FT                 IISFCRRENLFQHNYTMGATAVDRVHSICDLGVTIDSKLRFTEHIGIITAK
FT                 AFSTLGFIRRHANSFTDIYALKTLFCSMVRSILEYAAPVWCPQYVTHILTI
FT                 ERVQKKFLRFALRDLPWRDPVNLPHYSDRCQLIKLEALSTRRTHQQRMLIF
FT                 DLLTGNIDCPELLEQIPINVPPRRFRYSPFLVIPYNRTNHGSNNPFYVCLR
FT                 SFNDVAELFDFNLSKTVFSNRLREL"
XX
SQ   Sequence 5034 BP; 1393 A; 1243 C; 1052 G; 1346 T; 0 other;
     cattgtgagc atcgcgtttc acggtcgtag ttctgtgaat tattgtgttt agtgtttcgt        60
     gatactggat caattattac tgacatctac aaaacaccag cacgctgtca atttttcgaa       120
     gcgccatctg ccagaaaaac aaggaagcta gtagaagttc gagtataaca gttcaacagg       180
     gctgcatact ggtaggcgct ttaggcgcat cattatttta ccgttgctgt gcgtagtgtt       240
     gtaacattct tcctcgacac ttcacggctt cactatggaa tcatgccaag cttgctcaaa       300
     atctttggat tcggatagag tggtcacctg tagtggatca tgtggaatga ctttccactt       360
     tatatgcgtt ggcctgtcta aatctcaata cgcctgttgg acgtcgaaag tgggcatgtt       420
     ctggttctgc acatcatgcc gactgaattt cgaaccagcc gtatacgagc gagataaaat       480
     aatgctgaaa gctctacgtg aactgttgat tcgaacagac gctatggata cacggctcgg       540
     aaattgcgga gaaaatctca ggaaattcac caaaattctc catggtggca accaatccaa       600
     atcatcaaac tgctcgaatc ttcaaacaac attgcttcag agtattgatg aaatgactct       660
     cgacgatgtc gtagatgatc caatcaaccg gtccaggtca tgtgacgaaa cgtctttctt       720
     tgaagtgctg gatgaggtga acagctcaat agctatggct cctgataggt ttgtcgtccg       780
     aggaaataaa cgcgtgcaaa tcgtggaaag cacgtctcgt atgaacgcat ctactcccgc       840
     agctttgcca catgtatcga agtgcttgcc gccggataca atatgtgccc cgcctagtcg       900
     aagcagtcct aacatccact ctatcggaaa taacactaga tcgcccagcg gaagaaccct       960
     caaacctaac aactcttttc tcaaagttgc aaatggcgcg ctccaagcaa ttgacgacga      1020
     atgttattat gtcactcctt ttacgccaga tcaaacggaa gacgacatca agctgcacgt      1080
     gtgtgacatc actaatgcgg atccctcagt tgtcaaagtt acaaagctgg ttcctcgtgg      1140
     gaaaaaactt gaagaacttt cgtttgtatc cttcaaaata tcggtttgca gatcttactc      1200
     aggtgttgtc agcgacagct ggtactggcc agaaggaatt accatacggc cctttgaacc      1260
     aaactcaaaa aacgaaatcc ctgcacggct tccgaaatct atgcaataga acaacgtcaa      1320
     atttcttccg aaatcgccac agccgatgaa tgtcaatctt ctccatcacc gggacgcaca      1380
     gaatcaagca ctttggaagc cctggagccc cccatcacag tcctgaccat ccagccagcg      1440
     atcatcagac gtcccggtcc tgtgtttggg acgggcgaaa gggtcttcca gcctgtgcta      1500
     tcaggcaagt actctcgtct cgaagaaaat atccgctctg aagaactttt tcacaatagc      1560
     ccatcagaaa tcttcgtttc tacattcgac gtatcagcca acatcccggg acgcacaata      1620
     tacagcacat tggaagcccc ggagcccccc atcacagtcg tgaccacgca gccagcgatc      1680
     atcagacgtc ccggtcctgt gtttggaacg ggtgaagggg tcttccagcc tgtgctatca      1740
     ggcaagtacc tacagttgag gaacacaatc tgctctgaaa atgttttcgt tcgtagtgtt      1800
     gacgacccgc accattcaac tggatttcca ataccgggat gcacgcctgc tagcccctcg      1860
     gaagcccctt atccactcgt cacagtcgag cccatcctgc cagcggccag cagtcatccc      1920
     ggtcctgtgt atgagcgcgg agaaggggtc ttccaaactc caattgcagg caagtacacg      1980
     aacgatcaga acaacatgct gccagtaatt tcaatcgctt ccagctcctt tgcatcacat      2040
     cccaccttca acgagctaac cgaaccacct ggcgcgagca gcattgtccc agttaacgca      2100
     tcaacaacgc atcatcattt ggctctgtac taccagaacg ttaggggtct gcgaaccaaa      2160
     attgctcacc taaggctgtt actgagtagc tgtgactacg atgtcatagt cttcacggaa      2220
     acatggttgt gtgctggtat tgaaaatcgc gagattacgt ctgagtacac gattttccga      2280
     tgcgaccgca acgaattaaa tagtcgccat tcacgcggtg gtggtgtgct catcgcagtc      2340
     aaaaataatc tgccctgtga caccattcat ataccaaatt gtgagaacct tgagcaaatc      2400
     gccgtacgta taaaattgcg tgagaggttt ctctatataa cagcaatcta tattccgcca      2460
     aactccagtc ccgacgttta ctctgctcat gcaaatgcca tgcagtttgt tacagatctt      2520
     gcttcagtgt tcgatgttgt tatgtcgatt ggggacttca atcttcccaa tttgcattgg      2580
     caacttgata gcgatacgaa cggttacatt ccctcgaata tgtccactga acatgagcga      2640
     aatttggttg aatcgttgtt cgccatggga ttgcgtcaag tcaacagatt cacaaacacg      2700
     aatcgaaaac ttctcgatct cgtctttgta aatcttccag agcatgtaga tatgattctt      2760
     cctccttctg cccttttgcg gttggacaat caccatgttc catacatctt actccttgaa      2820
     gagttggagg ctaatccagc catgcccgct caagaagatt gggcattcga ttttcatgcc      2880
     tgcgactatc ggcaattaaa caacgttcta gcagacatcg actgggactc cgaattcgac      2940
     aacagaccat tggaggaaat tttaccgttg ttttacgacc gactcaacgc cgttatcaac      3000
     gatcatgtac caaaacgttt aagaaggtca agctcgtctt ttaacaaacc gtggtggact      3060
     ctcgaactcc gtaaccttcg caacagcctt agaaaatcaa ggaagcattt tttccgtaca      3120
     agatccgaga acgacagaag cacgcttcgt gaaatggaaa catcgtacaa agttctcctt      3180
     tcatctacat actgcaatta tatttcgagg attcaggcaa acgttaagga agatcctaga      3240
     cgtttttgga atttcgtcaa ccaccaaaaa acttgcaatg gaattccgtc aaccgtcaac      3300
     tacaacggtg tttttgctca ttccaactta gaagcagcta atctctttgc tacatttttt      3360
     gaaagcgtat acaataaggt agcgccagta caacgtcaca actccttcgc acacgttgac      3420
     gtttgcgaca tcaccttaac agctaccgaa ttcgtacctg atgaaacacg cgaggcacta      3480
     ggtgagcttg accccgacaa gagtgcgggc acggatggca ttccgcctct tcttctgaag      3540
     aactgcgctg catctctagc caaaccgatt actaaaatct tcaactgtac cattcgtgag      3600
     agagcctttc cgtctgtgtg gaaaacggct cgcatcgttc cgattttcaa atcaggaaca      3660
     tgtagcaatg taagcaacta cagaggcatt tccatacttt gtagtctcag caaagtttta      3720
     gaaaaaatga tgcataacgt tttgtacaat gtagcacgac ctttcataac tgacactcag      3780
     cacggtttca tgaagcaccg gtctacaacc tcgaatctga tgtgctacac taccagattg      3840
     tctacggaac tggcagcaag acggcaggta gactccatct atatcgattt tgctaaggct      3900
     ttcgacaccg ttccgcacgt tctaatagtc gaaaaaatga aatacatcgg atttccagcc      3960
     tggattgcac aatggatttt ttcctatctc acggatcgtg aagcttttgt ggttgtcaac      4020
     aacgtacgct cgcggacctt cgctataaca tctggtgttc ctcaaggcag tgtgttagga      4080
     ccactactat tcaacatctt cgtgaacgac ttgggcaact tgatttcgtc atccaaactc      4140
     tcttttgcgg atgatcttaa attatttcgt gtcattctct ccgaagccga ctgcgaagcc      4200
     ttacaggagg acatcaacaa cgtgctaata tggtgcgata acaacggcat gaacgtgaac      4260
     agtaagaaat gcaaaatcat ttcattctgt agacgcgaga atttatttca gcataactac      4320
     acaatgggtg caacagctgt agatcgagtg cattcaattt gcgatttggg cgtgacaata      4380
     gattccaagc tacgtttcac tgagcatata ggcattataa cggcaaaagc cttctcaaca      4440
     ctcgggttca ttcggcgcca tgccaacagc tttaccgaca tttatgcttt gaaaaccctg      4500
     ttttgctcaa tggtgcgaag cattctcgaa tacgctgctc cagtctggtg tccacaatat      4560
     gttacgcaca tacttacgat cgagcgagta cagaaaaagt tcttgcgttt tgcactgcgg      4620
     gatcttcctt ggagggatcc agtaaatcta cctcactatt cagaccggtg ccaactaatc      4680
     aagctggaag cgctatccac aaggcgcacg catcaacaaa ggatgctgat tttcgacctg      4740
     ctgaccggaa atatcgactg tcccgagcta ctggaacaga ttcctataaa cgttcctcct      4800
     cggcgatttc gttactcacc gtttttggtc attccgtaca acagaaccaa ccacggtagt      4860
     aacaatccat tttatgtgtg tcttcgttca ttcaatgatg ttgcagagtt atttgatttt      4920
     aatttgtcta aaactgtttt tagtaataga ttaagagagc tttagattaa tgttagtata      4980
     taatttttca gtctgtgcgt tgtaaacgaa gacggtgtat gtaaataaaa taaa            5034
//
ID   CR1-112_AAe repbase;    DNA;    INV; 4600 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-112_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4600
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1200-1200 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1435
FT                 /product="CR1-112_AAe_1p"
FT                 /translation="MSCEICACDTSVDSVLWSCVGCPRKFHANCIGVTVQR
FT                 GSLRRRDRKVVDVNSYVLPCCESCQELIQAKLDFNGLLEQQKVLEKQLNAN
FT                 TEVMHRLSLHQEKPNVVHEAIEGMEILLTSVRNELAAINKNSSLAGSVVAI
FT                 KNHITGLLDTAITATTENMYSTLKTVTSDISTDLRNINDEISHLSQLSIDT
FT                 AASCAMNSNPMLGLDILDELKSLSANILTNKNTSAPPSIEYPSLEAELNNK
FT                 IAEVSGWRLLGNRKVWKADWTQYDMRKSFHKRQQNMADKAKKRRKRRIRNA
FT                 NKNCNKNNINNNDVNINHHCHNNVPSKIHHKVSKQQNNNHGNFAFNNSQER
FT                 SHQLPPDRELLAAAKHHFSRPPTNYRPTMQFKRGEILNPYPAREAPRQSVA
FT                 VPPPNWTTEGSSTGGSCEACGACRHSCFLRN"
FT   CDS           1399..4470
FT                 /product="CR1-112_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRCMPAFVFSTELTDPSEAENNSIQPGEANQHLVTNN
FT                 NDNSPYGLTDLNNELPIISSETQPTEILIYCQNFNRMKSAFKINEIHKNIL
FT                 SSSYSIILGTETSWNDDVKSEEIFGSNYNVFRNDRDLLLTQRRSGGGVVVA
FT                 ISSNFSSEIIDSPKFKEFEHVWVKSNIGNETHIFVSVYFPPDQACKSTYES
FT                 FFLIAEEIITQLPPENKVHIYGDFNQRNADFIPDFENESILLPVVGDNETL
FT                 QFIFDKTASLGLNQINHVKNKQNCYLDFLLTNMHEDFCVSESISPLWKNEA
FT                 FHTAIEYSMFMHIYHTPHEYVYENIFDYSRANYTNIRLKLDNANWQSVLRN
FT                 QNNIECAIEIFYNLLWETIREEVPVKKRRRNHNSKNPIWFNKQIINLKNRK
FT                 QKAHKVYRRYKKPDDLEKYLVICDQLNLAISTALTEYNIKTENEIKSCPKN
FT                 FFNYVKTKLKSCNFPSTMTLDEKVGNNSEDICNLFAKFFQENYSTFSENDR
FT                 DYSYFSHFADFPSDVGVNSINVQDILFGLKNLDATKGSGPDEIPPGFIKNL
FT                 ATELTTPLFWLFNMSLQTGQFPKVWKKSFLIPIYKSGKKSDIRNYRGIAIM
FT                 SCIPKLFESIVNKNMFAQIKNRITNAQHGFFKGRSTTTNLLEFVSYSLSAM
FT                 DKGYFVEALYTDFSKAFDKLDIPMLTFKLEKMGIEMSLLKWIKSYLNDRQQ
FT                 IVKFNGKRSNPIHVTSGVPQGSHLGPLLFILYVNDVSYILNKLRVLIYADD
FT                 MKLFLEIKNDDDHNVFKNEIQIFYTWCCKSLLELNIKKCNLISYSRKRTTP
FT                 NMSIVLGNEHVKKCDKIRDLGVILDSKLSFVDHYNAIIHRAGNMLNFIKRF
FT                 GQHFRDPYTLKILYVAYVRSILEYCSIVWSPYTKKHEERIESIQKQFLLYA
FT                 LRNLGWSVLPLPSYESRCMLINMKSLKVRRDYAMVSFVNDIVSQRIDSADI
FT                 LSKLNFYTPTRHLRNRYLFTVGHHRTNYAKFSPLNQMMTIYNQHCEMIDVN
FT                 MSRTKLKKYFFDIQNNSN"
XX
SQ   Sequence 4600 BP; 1629 A; 828 C; 805 G; 1338 T; 0 other;
     tttaagtcgt caaccagttc ggacgcgttt gttaattgct ccagcccacc tgtgcgcgtt        60
     ttcatttgtc attaaatttt tattacatca gctttaagta gctacaggtg ccgtgcgcga       120
     tattgtttat aatcgaatca gttttttttt gtcacgcgta atgagttgcg aaatttgtgc       180
     ttgcgacact tctgtcgact cggtcttgtg gtcatgtgta ggctgcccgc ggaagttcca       240
     tgcaaactgc attggtgtca ccgtgcagag gggttcactg cggagaagag acaggaaggt       300
     agtggacgtt aactcttacg tactaccatg ctgtgaatcc tgtcaagagc taatccaggc       360
     gaaattggat tttaacggac tattggagca acaaaaagtt ctcgaaaaac agctgaatgc       420
     caatacggaa gtgatgcaca gactctcgct tcatcaagaa aaaccaaatg ttgtccacga       480
     agctattgaa ggtatggaga ttttgcttac tagcgtgaga aatgaactgg cagcaataaa       540
     taaaaacagt agcttggctg ggagtgtcgt tgccatcaag aatcatatta ccggccttct       600
     tgataccgca ataacggcaa ctactgaaaa tatgtactcc acgctaaaaa cggtgacatc       660
     cgatatatct actgacctgc gcaacataaa cgacgaaatt agccatttaa gtcaattatc       720
     aattgacaca gcggcaagtt gcgcgatgaa ttcaaatcca atgctggggc tggacatcct       780
     cgatgaatta aagtctttgt ccgcaaatat attgacaaac aaaaatacgt cggctccacc       840
     atcaatagaa tatccaagtt tggaagccga attgaataat aaaattgctg aagtgtcagg       900
     atggcgccta cttggaaaca gaaaagtttg gaaagccgat tggacgcaat atgacatgcg       960
     caaaagcttt cacaaaaggc agcaaaatat ggccgataaa gcgaaaaagc gtagaaagcg      1020
     gagaatcagg aacgctaaca aaaattgtaa taagaacaac attaacaaca acgacgtgaa      1080
     cattaatcac cattgccata ataatgtccc atccaaaatt catcacaaag taagcaaaca      1140
     acagaataac aatcacggaa atttcgcctt caacaatagc caggaaagga gtcatcaact      1200
     tcctcctgac agagagcttc ttgcggcagc gaaacatcat ttctctagac cgccaacaaa      1260
     ttatcgacca accatgcagt ttaaaagagg agaaatttta aacccatatc cggcgaggga      1320
     ggcgccccgg cagtccgttg cagtaccacc cccgaactgg acgacggaag gatcttcaac      1380
     tggtggatct tgtgaagcat gcggtgcatg ccggcattcg tgttttctac ggaattgacg      1440
     gacccctcag aggcagaaaa taattcaatt caacccggtg aagctaatca gcacttggta      1500
     acaaataata atgacaattc accatatggt ttaacagact taaataacga actaccaata      1560
     atttcttctg aaacacagcc aactgaaatt ttaatctatt gtcagaactt taatcgcatg      1620
     aaaagtgctt ttaaaattaa tgaaattcat aaaaatatat taagttcatc gtactcaatc      1680
     atattgggta cagaaacaag ttggaatgat gatgtgaaaa gtgaagaaat ttttggtagc      1740
     aattacaacg tatttcgcaa tgatcgtgac ttacttttga cacaaagaag atcgggcgga      1800
     ggagtcgtcg ttgcaatatc atcaaatttc agttctgaaa tcattgattc acctaaattt      1860
     aaagaatttg agcatgtgtg ggttaaatca aatattggta atgaaactca tatttttgta      1920
     tcagtttact ttcccccaga tcaggcttgt aagtcaacat acgagagttt tttcctgata      1980
     gcagaagaaa tcataactca acttcctccc gaaaacaagg tgcatattta tggcgatttc      2040
     aatcaacgta atgcagattt cattcctgat tttgaaaacg agagtattct actccctgtt      2100
     gttggcgata atgaaacttt gcaatttatt tttgacaaaa ctgcatcctt aggccttaat      2160
     caaataaatc acgtaaaaaa taaacaaaac tgttacctag attttttatt gacaaatatg      2220
     catgaagatt tctgtgtaag tgagtcaatt tcaccattat ggaaaaatga agcgtttcac      2280
     acggcaatag aatattctat gtttatgcat atttatcata ctcctcacga atatgtgtat      2340
     gagaatattt tcgattatag tagagccaat tatactaata ttagattaaa attagataac      2400
     gcaaattggc aatctgtttt gagaaatcaa aataatattg aatgtgcaat agaaatcttt      2460
     tacaatttat tgtgggaaac cattagggag gaagtacctg ttaagaagag acgaaggaat      2520
     cacaactcaa aaaatccaat ttggttcaac aagcaaatca taaatttgaa aaatcgaaaa      2580
     caaaaagctc acaaagttta cagaagatat aaaaaaccag acgatttaga aaaatatttg      2640
     gttatttgcg accaactcaa tttagccatt tctacagcac ttaccgagta caacataaaa      2700
     actgaaaatg aaataaagtc atgtccaaag aattttttca attacgttaa aactaaactc      2760
     aaatcgtgca actttccatc aacaatgact ttggatgaaa aagtaggaaa taattctgaa      2820
     gatatttgca atcttttcgc aaaatttttt caagaaaatt attcaacatt ttcggaaaac      2880
     gatcgagatt attcttactt ttcacatttt gctgactttc cgagtgatgt tggcgttaat      2940
     tctataaatg ttcaagacat tttgtttggt cttaaaaatt tggacgccac taaaggatca      3000
     gggccagatg aaattccacc cggattcata aaaaacttag caactgaact cacaactcca      3060
     ttattttggt tattcaatat gtctcttcaa actggccaat ttccaaaggt atggaaaaaa      3120
     tcattcctca taccaatata taaatcaggt aagaaatcgg acattcgaaa ttatcgcggt      3180
     attgctatta tgtcatgtat tccaaaactt ttcgagtcaa ttgtaaacaa aaatatgttt      3240
     gcccaaataa aaaatcgtat aacaaacgct caacacggct ttttcaaagg tcgttcgacc      3300
     actacgaacc ttctggaatt tgtaagttac tcactgagtg caatggataa aggttacttc      3360
     gtagaagctc tttacactga ctttagtaaa gcatttgata aacttgacat tccaatgttg      3420
     actttcaagc ttgaaaaaat gggaatcgaa atgagtctcc ttaagtggat caagtcctat      3480
     ttaaacgacc gtcagcaaat agtaaaattc aatgggaaaa gatcaaatcc aatacatgtt      3540
     acatctggag tacctcaagg ctcacactta ggccctcttc tttttatttt atatgttaat      3600
     gacgtttctt atattctaaa caaactgagg gtccttatat atgctgacga catgaagcta      3660
     tttttagaaa taaagaatga tgacgatcat aatgttttta agaatgagat acaaattttc      3720
     tacacgtggt gctgcaaaag tttattggaa ttgaatataa aaaaatgtaa cctcataagt      3780
     tatagcagaa aacgaaccac accaaatatg tctattgttt taggaaacga acatgtaaaa      3840
     aaatgtgata aaataagaga cttaggagtt atcttagact caaaactatc atttgtagat      3900
     cactataatg caataattca tagagcagga aatatgctca atttcataaa acgatttggc      3960
     caacactttc gtgatcctta cacattaaaa atactttatg ttgcatatgt aagatcaata      4020
     ttagaatatt gtagtattgt ttggtcacct tacacaaaaa aacatgaaga acgtatagaa      4080
     tcgatacaaa agcagttttt attatacgca ctacgtaatt taggctggtc agtacttcct      4140
     ctaccatcat atgaatcacg atgcatgctt atcaatatga aatcactgaa agtgcgtcgt      4200
     gattatgcta tggtttcttt tgttaacgat attgtttcac agcgcattga ttctgctgat      4260
     atactttcaa aactgaattt ttatactcca actcgtcact tgcgcaatcg ttacttgttc      4320
     acagtaggtc atcatcgcac gaactacgct aaatttagtc cgttgaatca gatgatgact      4380
     atatataatc agcattgtga aatgattgat gttaacatgt ctcgaacaaa actgaaaaaa      4440
     tacttttttg atatacaaaa caatagtaac tgaggaatgt attatgaatc gagtatactc      4500
     aacaaattta taatatataa acacatagat attaagaaca caatgtaatt tagaatggtc      4560
     tacaaaatgc ttgacgtcaa ataaataaat aaataaataa                            4600
//
ID   CR1-113_AAe repbase;    DNA;    INV; 4065 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-113_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4065
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1201-1201 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 21 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           224..1018
FT                 /product="CR1-113_AAe_1p"
FT                 /translation="MESICFSCTLTVKKEDEIVCNGFCKSSFHLECVHQSI
FT                 EIRNTIASSSQLFWMCKACSKMMANANFRQAISSTNNVLELMAEQYSITLN
FT                 ELRKEIAHNTTKINTILQRTPSQATPQIPRSQLPSSSRKRPRLLVDAPSHH
FT                 DNASVGTREFAPDESIPLAQKEDTFWLYLSGFDPQATTQQIEKLVKSNLNT
FT                 DKTVNVVKLVPKGRTLEELTFVSFKVGLEQQMKEVALSVSSWQKGIIFREF
FT                 DFSHSASSRQTFRFQPSPGDNCAQ"
FT   CDS           891..4004
FT                 /product="CR1-113_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KRLPYLYRHGRKVSSSVNSTLVTLLLRVKLFVFNHHQ
FT                 EIIVHNNHHATNTTEILTRNDQRQTTLIRNAQQLLISSADNSTISQNPATK
FT                 LETFTIYYQNVRGLRTKTNDLFLALSDSDYDVISFTETWLNNDVNNSELTQ
FT                 NYTIYRCDRNANNSCFQRGGGVLIGVRNGLQSTSVCFADSDRLEQIAVRIT
FT                 LPDFELYVCTIYLPPNSETILYEQHSACVQHLLDLAGDRGRVVVIGDYXLP
FT                 LLCWKYDDEINSFIPVNASSEQELALIESVGCCGLHQINDFSNANGRLLDL
FT                 VFVNEEKYVELFEPPLPLLKVDLHHKPFVLKFEINVMCDDDNISNPLDFDF
FT                 HRCDFASINTAISEVNWNEELNECSIDEAVSRFYQRVYSILQNAVPMKKRR
FT                 RMLGRRQPWWNNQLQRLRNRLRKARKRYFRSRDEQRKVELRVIESEYNSLH
FT                 AQSFRCYIHRTEEKIKRDPKSFWSFVSSRKQVNGIPQRVHYNDVEADTSFD
FT                 SANLFSSFFRSVLSNNRSPSSDAYLNSLPQHDFNVALFNFSPEDVLTKMQG
FT                 LDESKGAGPDRLSPVFIKYCADSLAAPTSIIFNRSIAESVFPSAWKIASIT
FT                 PIHKAGSIHNVENYRGISILSCLPKVFESLVHDSLYPHVHHIISEFQHGFV
FT                 KRRSTTTNLMTYVSTLIDALEKRQQVDAIYIDFTKAFDRVPHVLAVNKFNK
FT                 MGLPDWLTRWIHSYLTERSAYVRINGTSSNPFEITSGVPQGSHLGPLFFLL
FT                 FVNDLCESIKSQKLMFADDLKFFRVVSSLVECCAIQTDIDTLLNWCLLNGM
FT                 EVNTRKCSVITFSRVRNPANFEYKMSSEIIARVTTVKDLGVLLDSKLNFAQ
FT                 HIASTTAKAYAVLGFIKRNAQQFEDVHCLKTLYCALVRSILEYGVLVWAPY
FT                 HAAQSARIERIQRNFLRFALRRLPWTDPIRLPPYEHRCNLVHLTTLASRRV
FT                 LLQRLFVFDILKHNIDCSMLLYKVNFNVPIRITRHTEFLRLPVHRTLYGQN
FT                 NPFDVCCRRFNEVFVNFDFNVSKPMFRSRIRY"
XX
SQ   Sequence 4065 BP; 1158 A; 914 C; 852 G; 1136 T; 5 other;
     gtktgtgtga ggtaaacaat tcgtwaactg tgtttttttc ctgacgctaa ttttacgttt        60
     ttctctacgt tatcgtgaat ttttatgtgc gattttgttc tatctggacg catcttttat       120
     cgttccaccg gcgttatctg gagttcatca agttacgtcc tcatcttgag ctattaccgt       180
     caaaattgtc acaacacgga accgaagatc aacttcaaca acaatggagt caatttgctt       240
     ttcatgtacg ctcaccgtga aaaaggaaga cgaaattgtg tgcaatggct tctgcaagtc       300
     atcatttcat ctggagtgtg tgcatcaatc catcgaaatc cgcaacacca tagccagcag       360
     ttcacagctc ttttggatgt gcaaagcctg ttcgaaaatg atggccaacg ctaactttcg       420
     tcaggctatc tcatccacca acaacgtact ggaactgatg gctgagcaat attccattac       480
     gctgaatgaa ttgaggaaag agatcgccca caacactaca aaaataaaca caatcttgca       540
     acgcaccccg tcacaagcta ccccacaaat tccgagatcg cagcttccat catcgtcaag       600
     aaaacgaccc cggcttcttg tagatgcgcc ttcccatcat gataatgcat ccgttggtac       660
     cagagaattt gctccagacg aatcaatccc gttggcgcaa aaggaagata cgttttggtt       720
     gtatctttcc ggcttcgacc cgcaagccac aacccaacag atcgaaaaac tcgtcaagag       780
     caatctcaac acagacaaga cagtgaacgt cgtcaaattg gttccgaaag gaaggacact       840
     ggaggaactt acgtttgtgt cattcaaagt aggtctagaa cagcaaatga aagaggttgc       900
     cctatctgta tcgtcatggc agaaaggtat catcttccgt gaattcgact ttagtcactc       960
     tgcttcttcg cgtcaaactt ttcgttttca accatcacca ggagataatt gtgcacaata      1020
     atcatcacgc aacaaacacc accgaaattt tgactaggaa tgaccaacgg caaacaacac      1080
     tgatccgaaa cgcacagcaa ctacttattt cttccgcaga caacagcact atatcgcaaa      1140
     atccagcaac caaactcgaa actttcacga tctactacca aaatgttcgc ggactacgta      1200
     ccaaaacaaa cgatttgttt ttggctctat ccgacagtga ctacgacgtt atttcattca      1260
     cggaaacctg gctcaacaac gatgtgaaca actccgaact cacacaaaac tatactatct      1320
     atcgctgcga tagaaacgct aacaacagct gttttcagcg tggtggtggt gtattgattg      1380
     gcgtacgaaa tggactgcag agcacatctg tttgctttgc agacagtgat cggttggaac      1440
     agatcgccgt tcgcattact ctgcccgatt tcgaattgta tgtctgcacg atctacctac      1500
     cgcccaacag tgaaacgatt ctgtatgaac agcattctgc ttgtgttcaa cacttgctcg      1560
     atcttgctgg tgatcgcggg cgtgtagtag tcattggtga ttataawctt ccccttttat      1620
     gctggaagta cgacgatgaa ataaattcat tcataccggt gaatgcgtcg tctgagcaag      1680
     agcttgcctt gattgagtct gtgggatgtt gcgggcttca tcaaattaat gatttttcga      1740
     atgcgaatgg aagacttctt gatctagtgt ttgtcaatga ggaaaagtac gtcgaactat      1800
     tcgagccacc gttgcccttg ttgaaagttg acctccatca taaacctttc gttttgaaat      1860
     ttgaaatcaa tgtaatgtgc gatgatgata acatttcaaa tcccctcgat ttcgattttc      1920
     accggtgcga ctttgcatcg atcaacactg caatctcgga agtgaattgg aatgaagagc      1980
     taaacgaatg cagcatagac gaagctgttt cacgtttcta tcagcgggtg tactcgattc      2040
     ttcaaaatgc tgttccgatg aaaaagcgac gtcgaatgtt ggggagaaga caaccatggt      2100
     ggaataatca gctgcagcga ctacgaaacc gtttacggaa ggcgagaaag cggtattttc      2160
     gttctaggga tgaacagcga aaagtggaac tgcgtgttat tgagagcgaa tacaactctt      2220
     tgcatgcaca aagctttcgc tgctacattc accggacgga agagaaaata aaaagggatc      2280
     ccaaatcmtt ttggtcgttc gtgagtagcc gcaagcaggt gaatggaatt cctcagcgag      2340
     ttcattacaa cgatgttgaa gccgatactt cgttcgattc ggcgaacctg ttctcgtctt      2400
     tctttcgaag tgtgctaagt aataaccgat caccttcgtc tgatgcatac ttgaacagtt      2460
     tgccgcaaca tgatttcaac gtagcacttt tcaacttttc tccggaggat gtgttgacta      2520
     aaatgcaagg attagacgag tctaaaggcg ctggaccaga tcgactttct ccggttttca      2580
     tcaaatactg tgccgattcg ctggccgctc ctacttccat tatcttcaat agatcgattg      2640
     cggagagtgt ttttccaagc gcatggaaaa tcgcttccat aactcccata cacaaagctg      2700
     gtagtataca caatgtggag aactaccgtg gcatctcaat tctaagctgt ttgccaaaag      2760
     ttttcgaaag cctagtccac gattckctct atccacatgt gcaccacata atctctgaat      2820
     ttcagcatgg gttcgtgaaa agacgctcta caactacgaa tttgatgacg tatgtatcca      2880
     cgcttattga cgcactggaa aaacgacagc aagttgatgc aatatatatc gacttcacta      2940
     aagcatttga cagagtacct catgttttag cagtgaacaa attcaacaag atgggcctgc      3000
     ctgattggct gactcgatgg atacactctt acctcactga gcggagtgcc tatgtgcgaa      3060
     taaacggaac cagctcaaac ccgtttgaaa taacgtctgg tgtgcctcaa ggaagtcact      3120
     tgggcccttt attttttctg ttgttcgtca acgatctttg cgaatcgatc aaatcgcaaa      3180
     agcttatgtt tgcagacgat ttgaaattct ttcgagttgt ttcatcgcta gtggagtgct      3240
     gtgccatcca aacggacatt gacacgttac taaactggtg cctgttaaac ggaatggaag      3300
     tcaacacccg aaaatgcagc gttattacct tcagtcgagt gagaaaccca gccaactttg      3360
     agtataaaat gtcatcagag attatcgcca gagtcaccac agtgaaagat ttaggtgtgc      3420
     tactcgacag taagcttaac tttgctcaac atattgcttc aacaacggcg aaggcgtacg      3480
     cggtattggg cttcattaaa cgtaatgcac agcagtttga agacgttcac tgtttgaaaa      3540
     cactctactg tgctctggta cgcagcatac tagaatatgg tgtgctggtg tgggcaccct      3600
     atcacgctgc tcaaagcgct aggatcgagc gaattcaacg gaatttcctg cgatttgcgc      3660
     taagacggtt gccatggact gatcctatcc gactgccgcc gtacgaacat cgctgcaacc      3720
     tggtgcacct gacgacgttg gctagcagga gggttctttt gcaacggctt ttcgttttcg      3780
     atattttaaa acacaatatt gactgctcta tgctattgta caaagttaat tttaatgttc      3840
     caatcagaat tactcgacac actgaatttc tacgtttacc tgttcaccgt acgctttatg      3900
     gtcagaataa cccgtttgat gtttgttgtc gtcgttttaa tgaagtgttt gtaaattttg      3960
     attttaatgt gtcgaaaccc atgtttagaa gtagaattag atattaagtg tatctgtctg      4020
     tacggttaaa atcgaagaca agtaaataaa taaataaaat aaata                      4065
//
ID   CR1-114_AAe repbase;    DNA;    INV; 4978 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-114_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4978
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1202-1202 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           418..1461
FT                 /product="CR1-114_AAe_1p"
FT                 /translation="MDSCQICSNSISSDKLVTCSGTXGYFFHYACAGLSKS
FT                 HYSSWSANIGLYWFCASCRLNFNPNVCDREKTIVRALRELLLRTDSMDTRL
FT                 ANYGEHLRKINMTLYGYQQRTSQTNRSHDNSTFHQQIDMLNLDDTIDNTVN
FT                 RSRSCEETSFXEVLDEINTTVGQPTDKFIVGANKRVQIICNQPSPSTSKEH
FT                 TNQSRASTPAASSQIPKTPISVSKSSNASNPNRNSVSNHPTGTTRTSSGPL
FT                 SVANIGQPAADSVDFYVTPFTPDQKEEDVKLYIQEVANVAPSTIKVVKLVP
FT                 RGKDLDDLSFVSFKVTVNKTASDVIGDPWYWPDGVTVRVFDHNQKNGSSIQ
FT                 RPPQP"
FT   CDS           1422..4889
FT                 /product="CR1-114_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="SKKWFIHPATAPALVPFLSLESTTPGRTQKCIMDVPS
FT                 HPDPAVSSNVPCSKSRPGTSAVGGMVRGIQNAFSGKYNSSFKLSSFDRFSN
FT                 PRSDLQSNDHLGPCCFSTTSTNMSIRNSTSPGRTQKSTLDAPNHPDPAAAA
FT                 DACFQSRPGISAVGGKEGGFQNASSGKYNSYYELPSPGTLSNSSFQSPVLL
FT                 PSINQSPSTSADSALKVYYQNVRGLRTKIDSWFLAVTGCDYDVIALTETWL
FT                 DNRINSVQLFGPLYDVYRCDRNANNSDKRSGGGVLIAVKKSLSSTQLNVGD
FT                 SVLEQVWVKVGANNTTLYISSFYLPPDKTNDHQVIESHLQSIRAIDTLSSC
FT                 DDRILILGDYNLPGIQWIQNEYGFVSIDYPNSTLNNTYYSIIDGMAFSNLH
FT                 QLNATRNLNGRTLDLVFCNSLDNSVSEASELLTTIDSHHPALELLISTLVE
FT                 ETGADDDERQLNFKQTDFGALTSYLDLIDWSFMSNWTDVDSAARCFIDVLN
FT                 TWLIEHVPLKQKPRYPPWETNELRTLKRNKNAALRRMRKTRTPATKTEFQH
FT                 FSRAYTSMNASCYRSYVHRMQNNLRRNPKSFWGFVNSKRKDNGLPVNMFLG
FT                 EKHCTSSTNKCSLFAHRFSSVFNNEPCSDADVSRAVQDIIPDVVDIDIFDV
FT                 TDSMILRAASKLKNSFNPGPDCIPAAVYKKCINSMLQPLRIIFNISLKRYK
FT                 FPDVWKTSTMFPVFKKGSKRDIANYRGITSLSAGSKLFEIIVNDFLFFKIK
FT                 NYLSTDQHGFFPGRSVTTNLVDFTTNCLMNIENGLQVDAVYTDLTAAFDSI
FT                 NHNILLEKIKKIGASDGLVRWLKSYLVGRNLRVKIGGCYSGTFECRSGVPQ
FT                 GSNLGPLLFSIFFNDVTNFLPKGCRLLYADDLKIYFIIKNEDDCVMLQTVL
FT                 NQFSGWCSRNQMTLSIDKCSAISFHRKVKPICYNYRINGRLLERLSVVRDL
FT                 GVMLDDNLSFNHHRSSIIDKANRQLGFISKISRDFTDPYCLKALFCSLVRP
FT                 LLETADVVWTPYHSTWVERIERIQKRFLRHALKNLPWREPDNLPPYRERCQ
FT                 LLSMDTLEQRRHVNQAVFIAKLLKGEIDCPNLLSLLPLHVPSRMLRNHTLL
FT                 RPGQHRTNYGANAPLPAMLNHFNLVQQFFDFNMSTTSFKRKIVTQRLP"
XX
SQ   Sequence 4978 BP; 1374 A; 1173 C; 993 G; 1433 T; 5 other;
     ctsactcgtt tgtgcaatcg gtcgctctta tttgttgtga ttttttcgtc gcgaatattt        60
     tgatgttgca aacattgcaa atttgtcgcc gcgcgttttt cgtgttctga atggacttgc       120
     ttaccggttt tcgatgttaa tgtgacattt tatgctctct ggatcgtgaa ttttcgtgca       180
     ctgtttttag tgatttgttt gacaaactat tatttgtttt tcacacaccc acattcgctg       240
     tcgagctttt tttgaaacac catctgccag aaaaatcctg aagckcatct accacagtca       300
     acatcacgta caccggagtg ctttcgttag wgaaatcaca tacccaaagg cgcttgaggc       360
     acatcttcct accgtcgcac tgcgtagctc tgtaaaaggg attatctttg ttgcaaaatg       420
     gattcatgcc aaatctgctc aaatagcata agctctgaca aattggttac atgcagtgga       480
     acctgkggct acttctttca ttatgcctgc gctgggttat caaagtcaca ttattcatcg       540
     tggagtgcta atattggact ttactggttc tgcgcatcct gtcgattgaa tttcaatccc       600
     aacgtctgcg atcgagagaa gacgatagtt agagctttac gcgaactgct tttacgcaca       660
     gactcgatgg acactcgcct cgcgaattat ggagaacact tgcgcaaaat caacatgacg       720
     ctgtatggct atcaacaacg cacatcgcag actaatcggt cacatgacaa ttcgacgttt       780
     catcaacaaa ttgatatgct aaacctggat gataccattg acaataccgt taatcgctca       840
     agatcctgcg aggaaacatc ctttttsgaa gttcttgatg agatcaacac tactgtgggt       900
     caacctacag ataagttcat cgtcggtgcg aataaacggg ttcaaatcat atgcaaccag       960
     ccttcaccat ctacatctaa agagcataca aatcagtctc gtgcatctac tcccgcagct      1020
     tcttcacaaa taccaaaaac tccaatctct gtcagcaaat caagtaatgc atcgaatcct      1080
     aatcgaaatt ctgtgagcaa ccaccctact ggtactacca ggacatcttc tggtcctcta      1140
     agcgttgcca atatcggaca gcctgccgct gattctgtgg atttttacgt tactcctttc      1200
     accccggacc aaaaagaaga agacgtaaaa ctgtacattc aagaggtcgc taatgttgcc      1260
     ccatcaacca ttaaagttgt caaacttgta ccacgcggga aggatctaga tgatttgtct      1320
     tttgtgtcct tcaaagttac cgtcaacaaa actgcctcgg atgtaatcgg cgacccttgg      1380
     tattggcctg acggtgttac tgttcgtgtc ttcgaccata atcaaaaaaa tggttcatcc      1440
     atccagcgac cgccccagcc ttagtaccat ttctatcgct cgaatcgaca accccaggac      1500
     gcacacaaaa atgcattatg gatgtcccta gccaccccga ccctgccgtt tcgtcaaatg      1560
     ttccttgctc taaaagtcgt cctggcacct ctgcagtcgg aggtatggta aggggcatcc      1620
     aaaatgcctt ctcaggcaag tacaattcgt cgttcaagct ttcttcgttt gatcgtttct      1680
     caaaccctcg tagcgacctg caatcgaatg atcatctggg accttgctgc ttttcaacca      1740
     cgtcaacgaa catgtctata aggaactcga cttctccggg acgcacacaa aaaagcactt      1800
     tggatgcccc caaccacccc gacccagccg ctgcagctga tgcctgtttt caaagtcgtc      1860
     ctggcatctc tgccgtcgga ggaaaggaag ggggcttcca aaatgcctct tcaggcaagt      1920
     acaattcgta ttatgaactt ccatcgcctg gcaccttatc aaattccagc ttccagtccc      1980
     cagtgctact tccatcgata aaccaatctc caagcaccag tgccgattca gcgttaaaag      2040
     tgtactacca gaatgtgcgt ggtttgcgca ctaaaatcga tagttggttt cttgctgtta      2100
     ctggctgtga ttacgacgtg atcgccctta ctgaaacctg gttggacaac cgtatcaatt      2160
     ccgttcaact gtttggaccc ttatacgacg tgtacaggtg cgaccgcaac gcgaacaaca      2220
     gcgataagcg gtccggaggc ggagtactga tcgccgttaa aaagtctctc tcttccacgc      2280
     aattgaatgt tggcgacagt gtattggagc aagtgtgggt taaagtcggt gcaaacaata      2340
     caaccctgta tatctcgtcg ttttaccttc ctccggataa aacgaacgat caccaagtca      2400
     ttgagtcgca tctgcagtcc attcgtgcaa tcgacactct tagttcatgt gatgaccgaa      2460
     ttctgattct tggtgattac aatcttcctg gaattcagtg gatacagaat gagtatggtt      2520
     tcgtttctat tgactatcca aactctactc ttaacaatac atactactcg attattgacg      2580
     gtatggcttt cagcaatctc catcaattga atgctactcg taatttaaat ggacgtactc      2640
     ttgacttggt gttctgtaat tcgcttgaca attctgtttc tgaagccagc gaactgctca      2700
     ctactattga ttcgcatcat cccgcattag agcttcttat ttcaactttg gtcgaggaaa      2760
     ctggcgctga cgatgatgaa cggcagctta acttcaaaca aacggacttc ggtgctttaa      2820
     ctagttatct tgatctcata gattggtcct ttatgagcaa ttggacagat gtggattcag      2880
     ctgctcgctg ttttatcgat gtgcttaata catggctgat agaacacgtc ccattaaaac      2940
     aaaaaccacg atatccacct tgggagacta atgagctacg aactcttaag cgcaataaga      3000
     acgccgcttt gcgtagaatg cgcaaaactc gaactccggc aacgaaaact gaattccagc      3060
     attttagtag agcttatacc tcaatgaatg cttcttgcta tcgcagttac gtgcaccgaa      3120
     tgcaaaacaa tctccgtcgc aacccaaaat ctttttgggg gtttgtaaat agcaagcgta      3180
     aggacaacgg gcttcctgtc aacatgtttc ttggcgaaaa acactgcact tcttccacga      3240
     acaagtgttc tttatttgcc caccgtttct ccagcgtctt caacaatgaa ccctgttcgg      3300
     atgctgatgt aagcagagct gttcaagata tcattcctga tgtagttgac atcgatattt      3360
     ttgatgtaac tgattcaatg atcctacgtg cggcaagtaa gcttaaaaac tcgtttaacc      3420
     ctggtccaga ctgtattcct gcagcagtgt acaaaaagtg cattaattca atgcttcaac      3480
     cattacgaat aatattcaac atctctctga agcgttataa gtttccggat gtctggaaga      3540
     cttctaccat gtttcccgtc tttaaaaaag gatcgaagcg cgatatagca aactatcgtg      3600
     ggataacgtc tcttagcgcc ggatctaagc tcttcgagat catcgtaaac gatttcttgt      3660
     ttttcaaaat aaagaactat ttgtcgaccg atcaacatgg cttcttccct ggaagatcag      3720
     ttactacgaa cctagtggac ttcaccacca attgccttat gaacatagaa aatggattac      3780
     aagtggatgc cgtgtatact gacttgactg ccgcctttga cagtatcaat cacaacattc      3840
     ttctggaaaa aattaagaaa ataggtgcat ctgatggtct cgttagatgg ctcaagagct      3900
     acttagtggg tcggaattta cgtgtcaaaa ttggtggctg ctattcggga acatttgaat      3960
     gcagatctgg agttccccaa ggcagcaatt tgggaccgct gctgttctct atcttcttca      4020
     atgatgtcac caacttttta ccgaaaggat gcagattatt atacgcagat gaccttaaaa      4080
     tctacttcat tataaagaac gaagatgact gcgtaatgtt gcaaaccgtg cttaaccagt      4140
     tctccggatg gtgttcacgg aatcagatga ctctgagtat cgacaagtgt tcagctatat      4200
     cattccatag gaaagtaaag cctatctgtt acaattatcg gatcaatgga aggttactgg      4260
     agagattgtc tgttgtaaga gacttaggtg tgatgttgga cgacaacctt tcgtttaacc      4320
     atcacaggag ctctatcatt gataaggcca accgccagct tggctttatc tcaaagattt      4380
     cacgcgactt cactgatcct tactgcctga aagccttgtt ttgttcactg gtacgaccgt      4440
     tgcttgaaac tgcagatgtt gtatggacac cttaccactc cacatgggtt gagcgaatag      4500
     aaagaatcca gaagagattt ttacggcatg cgcttaaaaa tttgccatgg agagaacccg      4560
     ataatctgcc accttaccga gagcgttgtc agttactgag catggacacc cttgaacaac      4620
     gaagacatgt caaccaagca gtttttatcg caaaactttt aaaaggggag attgattgcc      4680
     caaatcttct ttctttgctg cctctgcatg ttccatcgag aatgctacgc aatcatacgc      4740
     tactccgccc cggtcaacat aggactaact atggtgctaa tgctccactt cctgccatgt      4800
     taaaccactt taatttagta caacaatttt ttgattttaa tatgtcgaca actagtttta      4860
     agaggaagat tgtcactcag cgactaccgt aataataagt taaggtcttg tataagaata      4920
     gaaaaattca ctagggcgtg ttccgatgaa tgtatcccaa taaataaata aataaata        4978
//
ID   CR1-115_AAe repbase;    DNA;    INV; 4236 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-115_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4236
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1203-1203 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 18 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..896
FT                 /product="CR1-115_AAe_1p"
FT                 /translation="MNKTLYSGGQSSKQVNQSLDQTSFQRKIDMLTLDDVD
FT                 DPINRTRSCEETSFFEVLDEINSTVAQPSEKFIVGPNKRVQILTNQPSSSS
FT                 SSHVQENASTPAASSQKRRAPIITSDISSHIGHSSQHRLDLPASNRSRQHD
FT                 NTRPSSGPLSVAKVGQTASDMSDFYVTPFTPNQSEEDIKQYIQEICKVDIS
FT                 SVRVAKLVPRGKKLDDLTFVSFKVSVDNTISEMIGDPWYWPEGVSVRAFDY
FT                 IQKNEPTTLRPTSS"
FT   CDS           827..4129
FT                 /product="CR1-115_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RCLCPCIRLHPKKRTNDTPSDLVIEMTTTSHVPNHQT
FT                 LLAVPDLRFNPGCLTKLGRIHSGIPGDPTPSVTVQLTSAISSNRRRPSSVD
FT                 DFGGRVAQPAISGKFSSNIEHSSPHVTSLSSTVEDISSNRKLTHPSSSINQ
FT                 RTPPSPRRTSIRIYYQNVRGLKTKIDSWFLAVSDCDYDIIAITETWLDDRI
FT                 NSVQLFGPMYDVYRCDRNSENSNKRSGGGVLIAVRKSLSSVQVNVGNMVEQ
FT                 AWVSVKLEKRSLHISSFYLPPDKTNDPNIIEAHLNSIRFIESGAAQDDEIL
FT                 IFGDYNLPRAYWIKDDHGSIVLDSARSTLNASCNAIIDGMAFHNLHQLNLV
FT                 SNKNGRILDLVFSSSELVAVTEASDRLIAIDLHHPPLEMVLLAVPEEICAH
FT                 ETEHRLDFKKINFDSLLTFLDNINWAFVSLCTDVDTATRNFIGILNDWLVT
FT                 HVPRSKSQRYPPWETHELRTLKRRKNAALRRFRKNRAPAFKTQFQCASRAY
FT                 MSMNDSCYRAYVVRTQNQLRRNPKSFWGFVNSKRKETGLPLTMSFRERECS
FT                 DPSGKCALFAECFSSVFNNNLCTSSDIERATCDVSPHVADIDIFDVTDSMI
FT                 LRAVSKLKNSHSPGPDGIPAIVYKKCINSLLAPLRHIFNLSLAQGSFPSIW
FT                 KESFMFPVFKKGSKRDISNYRGITSLSAGCKLFEIIVNEYLHFELKNFIST
FT                 DQHGFFPGRSVSTNLANFSNTCITNMENGYQVDAIYTDLTAAFDRIDHDIL
FT                 LKKIEKIGASVGFIKWLRSYLVGRKLKIRIGASCSSYFESTSGVPQGSNLG
FT                 PLLFSVFFNDVTNVLPRGCRILYADDLKIFLVIRNPDDCVRLQNMLSHFYD
FT                 WCERNKMSVSVSKCFVISFHRKSSPINFNYKLAGCTLNRTTLVRDLGVMLD
FT                 SNLSFNQHRCMVIDKANRQLGFIAKISREFTDLYCLKALYCSLVRSILETA
FT                 DIIWTPYQSTWIERIEKIQKRFLRHTLAHLPWNNPANLPPYTDRCRLLNMD
FT                 TLENRRRANQALFVAKLLKGEVDAPMLLSLLPVNIPSRPFRRYTFLRQAQH
FT                 RTNYGSNAPLPAMIAEFSRVQHLFDFNLSSGVFKNRVLEYLRAS"
XX
SQ   Sequence 4236 BP; 1215 A; 995 C; 837 G; 1189 T; 0 other;
     cacgtcgtct gaattttgac cccgccgttt atgaccgaga gaagactatt attaaagctt        60
     tgcgagagct attaataaga actgattcaa tcgatacgag attgggcaat tacggcgaaa       120
     acctacggag aatgaataaa acgctctaca gtggaggcca aagttctaaa caagttaacc       180
     agtcgttaga tcaaacgtct ttccagcgca aaatagatat gctcaccctg gatgacgtcg       240
     acgatcctat caacagaaca agatcatgcg aagagacttc tttttttgaa gttttggacg       300
     aaattaattc tacagtggca caaccgtctg aaaaattcat cgtcgggccc aataaacggg       360
     ttcagatcct aaccaatcaa ccatcttcga gctcaagcag tcacgttcaa gaaaacgctt       420
     ctactcccgc cgcttcttct cagaaacgta gggctccgat catcacttcg gatatatcgt       480
     cccatatcgg ccactctagt cagcaccgcc tcgacctacc tgctagcaat agatcacgac       540
     agcatgacaa tacacgacct agttctggac cgctcagtgt ggcgaaagtt ggacaaacgg       600
     ccagtgatat gtctgacttt tatgtcactc cattcactcc caaccaatcg gaagaggata       660
     taaagcagta cattcaggaa atttgcaaag tggatatttc ttctgtacga gttgctaagc       720
     tggtgcccag gggaaaaaaa ctggatgatc ttactttcgt ctctttcaaa gtttccgttg       780
     acaatactat ttcggaaatg attggtgacc cttggtattg gcctgaaggt gtctctgtcc       840
     gtgcattcga ttacatccaa aaaaacgaac caacgacact ccgtccgacc tcgtcataga       900
     gatgaccacc acttctcatg taccgaatca tcaaacgttg ctggctgttc ctgatctccg       960
     gttcaaccct ggctgtttga cgaaattggg acgcattcat tcaggcattc cgggcgaccc      1020
     tactccatcc gtcacagttc aactcacatc tgccatctca tccaaccgaa gacgtcctag      1080
     ttctgtagac gattttggag gcagggtcgc ccagcctgca atctcaggca agttttcttc      1140
     caatattgaa cattcgtccc ctcatgtcac ttcgctttcc agcactgttg aagacatctc      1200
     cagcaacagg aaattgactc atccaagctc atcaatcaat caacgtaccc caccctctcc      1260
     tagacgcaca tcaataagga tctactacca aaatgttcga ggcctgaaaa caaaaatcga      1320
     tagttggttc ttggcagtta gtgattgtga ctacgatatt atcgcgatca ctgaaacttg      1380
     gctagatgat cgtataaact ccgttcaact tttcggtccg atgtatgacg tttatagatg      1440
     cgatcgaaat tccgagaaca gcaacaagcg tagtggaggt ggtgttctga ttgcggtcag      1500
     aaaaagttta tcttccgtac aagtaaacgt cggcaacatg gtggagcaag cgtgggttag      1560
     tgtgaaactg gaaaaaagat cactccacat ttcttcgttt tatctccctc ccgataaaac      1620
     aaatgacccg aatattatcg aggcacattt gaattctatt cgattcattg aatctggcgc      1680
     tgctcaagac gatgaaatac taattttcgg ggattacaac ctaccacgag cctattggat      1740
     aaaagatgat catggaagca ttgtcctgga ctccgcacgt tctaccctga atgcttcatg      1800
     caatgccatt attgatggta tggcgttcca taatcttcac caattgaatt tggtcagcaa      1860
     caaaaatggg cgcattctgg accttgtgtt ctccagttct gagctggtag ctgttactga      1920
     agcgagtgat agattaatag ctatcgactt gcaccatcca cccttggaaa tggtactttt      1980
     ggctgtgcct gaagaaatct gtgcgcatga aacggaacat cgtttagatt tcaagaagat      2040
     aaacttcgat tctttactga ccttcctcga caacataaat tgggcgtttg tgagcctctg      2100
     tacagatgtc gacactgcca ctcgcaattt tattggtatt ctgaacgatt ggcttgttac      2160
     gcatgttcca agaagtaaat cacagcgata ccctccatgg gaaacccacg agctgcgaac      2220
     actaaaacga agaaagaatg cagcactgcg tcgttttcgt aaaaatcgtg ctcctgcttt      2280
     caagacccaa tttcaatgcg ctagccgagc ctacatgtcg atgaatgatt catgctatcg      2340
     agcttatgtt gttcgtaccc aaaatcaact tcgtcgtaat ccgaaatcat tctggggttt      2400
     tgtgaacagt aaacgtaagg aaaccggact gcccttaact atgtcattta gagaaaggga      2460
     atgcagcgac ccctcaggaa aatgtgcttt attcgccgag tgtttttcga gtgtcttcaa      2520
     taataatcta tgcacctcct ctgacataga acgcgccact tgcgatgtct ccccccacgt      2580
     tgctgacata gacatttttg acgtaaccga ctccatgatc ctgcgggcag taagcaaact      2640
     gaaaaactct cattcacctg gtcctgacgg aattcctgcc atcgtttaca agaagtgtat      2700
     caactcactc ttagcacctc ttcgacacat attcaacctt tctctggcgc agggtagctt      2760
     cccaagtata tggaaagaat cattcatgtt cccagttttc aaaaaaggat ctaaacgcga      2820
     tatcagtaat tatagaggaa tcacctctct cagtgctgga tgcaagctat tcgaaattat      2880
     cgttaacgaa tatctacact tcgaattgaa aaatttcatc tccacggacc agcatggatt      2940
     cttccctggg agatcggttt caacgaatct agccaacttc tctaacacat gtatcacgaa      3000
     catggagaac ggatatcagg tggacgctat ctacactgat ttaaccgctg ctttcgaccg      3060
     aatcgaccat gatattcttc taaaaaaaat agaaaaaatt ggagcatctg ttggatttat      3120
     caaatggtta cgaagttatc ttgttggacg gaaattgaaa atcagaatcg gtgctagttg      3180
     ctcgagttat tttgaaagta cttctggagt tccccaaggc agtaaccttg ggcctttgtt      3240
     gttctccgtt tttttcaacg atgtcaccaa tgttcttcca cgtggatgcc gtatcctgta      3300
     cgcagatgac cttaaaatat tcttagtgat acgcaatccg gacgattgtg ttagacttca      3360
     aaacatgcta agccattttt acgattggtg tgaacgaaac aagatgtctg taagcgtttc      3420
     gaaatgtttc gtgatttcat ttcataggaa atcgagtcca atcaatttca actacaaact      3480
     ggcaggctgt accctgaata ggactacctt agttcgggac ctaggggtga tgttggacag      3540
     taatctctcc ttcaatcaac acagatgtat ggtgattgat aaagctaatc gtcaattagg      3600
     ttttatcgca aaaatctctc gtgaattcac cgatctctac tgcttgaaag cactgtactg      3660
     ctcgcttgtt cgctcgatac ttgagacagc cgacataatt tggactccct atcaatcaac      3720
     atggatcgaa cgaatcgaaa agatccagaa acgtttccta cgacacacac ttgcacattt      3780
     gccttggaac aatcctgcga acctgcctcc ctacactgat cgttgtcgac tccttaacat      3840
     ggataccctg gaaaaccgga ggcgagcgaa ccaagcgctt ttcgttgcaa aactactgaa      3900
     aggtgaagtt gatgccccaa tgctactttc tcttctacct gtaaacatcc cgtcaagacc      3960
     gtttcggaga tatacatttc tacgtcaggc tcagcataga actaattacg gatccaacgc      4020
     tcctctacca gcaatgattg ctgaattttc tcgtgttcaa cacttatttg attttaattt      4080
     atcgtccggt gttttcaaaa acagagtcct tgagtatttg cgagcttcat aaatctttgt      4140
     cattagtctt caattttaaa atagttttaa gccttgttca ctaggatact aaatccgatg      4200
     aatgtatttt gtaataaata aataaataaa taaaaa                                4236
//
ID   CR1-116_AAe repbase;    DNA;    INV; 4792 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-116_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4792
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1204-1204 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1617..4757
FT                 /product="CR1-116_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PSSYLPFSPDHVVHRTPLENNSPVLINVNDLQPLRDS
FT                 PPLHIRDDLLPPRQTSEYPRSTLTEEQCTSTDSIQPLRSSCCAHTADRNES
FT                 HQTNYSIYYQNVRGLRTKTRDLYLALVECDYDIVVFTETWLHAGIASAEFS
FT                 ANYSVYRCDRSSHTSQHSRGGGVLIAVKPHVRCKEVFFKHSGIEQVCIEVK
FT                 LNDCSLFISSVYMSPSLSTDSYERYIKCMNELLERITDKDTLLLMGDYNLP
FT                 NVEWQFDDDLCCFLPLNQFDENSTGVLTKESCIISGMFDGGLHQINGIRNV
FT                 NDRLLDLAFVNTMDCWDLSEAVVPIMPLDAHHPALLLNIMCSTQTLNLLDL
FT                 EGAFDFRSCNFAEVNASLSEIDWNTLARSLSVDDAVDAFYRTIYFTIGNHV
FT                 QRRRPLVTKKVPWWNSELSLLKNRLRKARKKYSRSPSVESKTWLRSCEAEY
FT                 QVLHRNVYRTYITDIQRKLKTDPAHFWSYIRSRRGTNGLPISLSLGDEKSE
FT                 SSQEAVNLCADYFKSTYVHHEPLTTDEHLRFVEQFDINIPHLEVSVQDIEE
FT                 ALARINEQKGPGPDGLSPTFLKNCRHTLALPVSILFNMSLSTSRFPSAWKI
FT                 ASMVPVHKSGSTHKVENYRGISILNCLAKLLERFVYDLIKSTTDHIVSECQ
FT                 HGFVGKRSTVTNMMVFVPFVSQSLTERYQVDAIYIDFAKAFDRLSHDIIVS
FT                 KMHHLGFPLWLCTWLRSYLVDRKAFVKCGTVSSDTFAIKSGVPQGSHLGPL
FT                 LFTLSINDICVIIRSEKILFADDLKIYRKIKDSVDCVALQNDLQSLNEWCK
FT                 VNRMQVNVKKTKVISFYRSEGTTIHQYTLESTVIDRVTSIRDLGIIVDKSL
FT                 TFKEHLSVTISKAITTLGFIIRNTKDFDDVYVLKTLYCSLVRSILEYAIQI
FT                 WAPRQIGELRLLESVQKRFLRYALRSLPWNDPIRLPPYLSRCQLIRLESLG
FT                 GRSEMLRRLFIFDLLQGNINCSSLLAAVPIHAPTRSLREFEFLRIPNYGHR
FT                 TFFNPFVECCRLFNDVYYVFDFNVSKTMFKDRIRNNAQSER"
FT   CDS           join(349..651,627..1613)
FT                 /product="CR1-116_AAe_1p"
FT                 /translation="MVVCELLACPDPEKVARVIQCDGRCRKTFHIACVGVT
FT                 GPHLKAHQENDGVLWLCSDCRRNRGDALLEKXDANRIGLADLAKRMETYFE
FT                 VVVTKLDTHLTLRARYSLNVALIRELASTTATSNALNVELITRTSSNATFN
FT                 FEDSLSAVPDKICPSASENPYDEAIQRSSETAVQVSTSQGGNENDMQRNSS
FT                 PIPVELQSGNPKSSASRIQSTNAKIVDSRSCSHGSATAHQANIPTSNANSV
FT                 SPFSSNPFVINAPPSAYPACYYAPWTPGASGLFCHPYPMATALPRTQQSYF
FT                 GFAHPADSANKRSNVKRKKNNIRGSNVEATFEPKLTAAQNLPSGSHSDQTI
FT                 TYCVRNLSPDTNAAQVQRYIASKGRIPETAISCSSVAKKGKHISFQTFRVI
FT                 IPQCYAGVVSSDDFWPDGVTISVFGRPKAVSLPIEI"
XX
SQ   Sequence 4792 BP; 1413 A; 954 C; 986 G; 1438 T; 1 other;
     acgtttcgct tggctgttgt tgctgttgct tgtcgctgtt gctgttcacc tcgttctcat        60
     tggtttaaca atcccaaaaa ttcctaaaac ataacagtct gttggcggaa tacctttttt       120
     gtccggatgt catgaaatgt tcagaataag tggcgaattt tgagataaat tcgtgttttt       180
     gtggcaaata aaacagcatt tcacagcatt gtttggctgt gatcaagttt tttattcaat       240
     tgcatatatc cgttaaacga ttgttgagct ctcacacgat catcttcaat cacagttcgt       300
     tttctgcact caccgttcgg catatactgg tggtatactc tcgttgccat ggtggtatgc       360
     gagcttctag cttgtcctga tcctgaaaag gttgcaagag tgatacaatg tgatggacgt       420
     tgtaggaaaa catttcacat cgcatgtgtt ggtgttactg ggcctcacct gaaagcacac       480
     caggaaaatg atggagtttt atggctgtgc tccgattgcc gccgtaatag aggtgatgca       540
     ctgctggaaa aaawtgatgc gaacaggatt ggattagcag acttggcaaa acgcatggag       600
     acatatttcg aagttgtggt aactaagctc gatactcact taacgttgcg ttgattagag       660
     agttggcatc caccacggca acttcaaatg ctttgaatgt tgagcttatc acccgtacgt       720
     cttcgaatgc aactttcaat ttcgaggatt cactcagcgc tgtccccgat aaaatttgtc       780
     catctgcaag tgaaaacccc tatgatgaag ctattcaacg atcaagtgaa actgcagtac       840
     aagtttcaac cagtcaagga ggcaacgaga atgatatgca gcgaaattcc tcacctattc       900
     cagtagaatt gcaatctggc aatccaaaat cctctgcttc aaggatacaa agcacgaatg       960
     caaaaatcgt cgattcacgg agttgtagtc acggcagtgc aacggcacac caagctaaca      1020
     ttcctacaag taatgcaaac tctgttagtc catttagttc caatccgttt gttatcaatg      1080
     ctcctccaag tgcttaccca gcttgttact acgccccatg gacacctggt gcttctggtc      1140
     tgttttgcca tccttatcca atggctacgg cgcttcctag gactcagcag tcatattttg      1200
     gctttgccca tcctgcagat agtgccaata agagaagcaa tgtcaagcgt aagaaaaaca      1260
     acattcgtgg aagtaacgtg gaagcaactt ttgaaccgaa gttaacagct gctcaaaatt      1320
     tgccatcggg ttcacattcg gatcaaacta ttacttactg tgtacgtaat ttatcccctg      1380
     acaccaacgc tgcccaagtt cagaggtata tagcatcaaa aggcaggatt cctgagacgg      1440
     cgatttcttg ctcaagtgtg gctaaaaaag gaaaacatat aagttttcaa acatttagag      1500
     tgataattcc gcaatgctac gctggtgttg tatcatcgga tgacttttgg cccgacggtg      1560
     ttactatatc cgtttttggg agaccaaaag cagtttcctt gccaatcgag atatagccat      1620
     catcttactt accgttttca cctgatcatg tcgtacacag aacaccattg gaaaacaact      1680
     ctccagtact catcaacgtt aacgatctgc aacctcttcg cgactctcct cctctacata      1740
     taagagatga tttattaccg cctcgacaaa ccagtgagta tcctcgttct acacttactg      1800
     aagaacagtg tacatccacc gatagcatac aaccactacg cagttcatgc tgtgctcata      1860
     ctgctgatcg taatgaatcg caccaaacaa attattcgat atattatcaa aatgttcgtg      1920
     gcctccgcac caagacaaga gatttatatt tggctttggt agaatgtgat tatgacattg      1980
     ttgttttcac tgaaacctgg ttgcatgctg gtattgctag cgcagaattt tctgccaatt      2040
     attcagtcta cagatgtgat cgtagctccc atacaagcca acactcgaga ggtggcggtg      2100
     tattaatagc cgttaaacca catgtacgct gtaaagaagt gttttttaaa cattctggaa      2160
     ttgagcaagt atgcatagag gtaaagctca acgattgctc gctgtttata tcttctgtat      2220
     acatgagccc aagcttgagc acagacagct atgaacgata tatcaaatgc atgaatgaat      2280
     tactcgagcg gataactgat aaggacacat tgttgttgat gggtgattac aatctgccaa      2340
     atgttgaatg gcaatttgac gacgatctgt gttgtttcct tccattgaat caattcgatg      2400
     aaaatagcac gggagtctta acgaaggaat catgtattat ttctggaatg tttgatggcg      2460
     gtctgcatca aattaatgga ataagaaatg tgaacgatag attactggac cttgcattcg      2520
     tgaacaccat ggactgttgg gatctatctg aagcagttgt tccaattatg ccacttgatg      2580
     cgcaccatcc agctctactt ctaaatatca tgtgtagcac gcagacactc aatctgttgg      2640
     atttagaagg cgcttttgat tttcgttctt gcaacttcgc cgaagtaaat gcatctttaa      2700
     gtgagataga ttggaacact ctcgcgcgct cattgtctgt tgatgatgct gtagatgcat      2760
     tttacaggac tatatacttc acaatcggaa atcatgttca gcgcagacga cctctagtga      2820
     ctaaaaaagt tccgtggtgg aatagcgagc tttcattgtt gaaaaatcgc ctgagaaagg      2880
     cccgtaagaa atacagccgt tctccatctg tagaatcaaa aacgtggtta cggtcatgtg      2940
     aagctgaata tcaagttctg caccggaatg tgtatagaac ctatattaca gacattcaac      3000
     gaaaattgaa aactgatcca gcacactttt ggagttatat tcgtagcaga agaggaacca      3060
     acggcctacc aataagttta tcgcttggag atgaaaaatc tgaatctagt caggaggcag      3120
     taaacttatg tgcggattat ttcaagtcaa cttatgtaca tcatgaacct cttaccacag      3180
     atgagcacct caggtttgtg gagcaattcg acattaatat accgcatctg gaggtttctg      3240
     tccaagacat cgaggaagcg ttagcaagga tcaatgaaca aaagggtccg ggtcctgatg      3300
     gtttatctcc aacatttctg aagaattgca gacatacgtt agcgctacct gttagtatat      3360
     tgtttaatat gtcactatct acgtccagat ttccgtcagc gtggaagatt gcttcaatgg      3420
     ttccagtaca taaaagtgga agtacacata aggtagagaa ctacagagga atatctatat      3480
     tgaactgtct cgcaaagttg ctcgaacgtt tcgtttatga tttgattaaa tctacaactg      3540
     accatatagt atctgagtgt cagcacggtt ttgtaggaaa aaggtcaact gtcaccaata      3600
     tgatggtttt tgtacctttt gtaagccaat cacttacgga acgttaccaa gtcgacgcta      3660
     tatatattga ctttgcaaag gcgtttgata ggctatcgca cgatataatc gttagcaaaa      3720
     tgcatcatct tgggttccct ttatggttat gcacatggct tcgttcatac cttgttgatc      3780
     gtaaagcgtt tgtcaaatgt ggcactgttt catcagacac ttttgctatt aagtcaggag      3840
     tacctcaagg cagccattta gggccattgt tatttacatt gtccattaat gatatctgtg      3900
     taataattag atcagagaaa attttgtttg ctgacgatct caaaatttat agaaaaatca      3960
     aggatagtgt agattgtgtt gctctccaaa atgatttaca gtcattaaat gaatggtgca      4020
     aagtgaacag aatgcaggtc aatgtgaaga aaactaaagt catctccttt taccgtagtg      4080
     aaggcaccac cattcatcaa tacactctcg aaagtactgt aattgataga gtaacttcaa      4140
     ttcgcgacct gggaataatt gttgataaaa gtcttacatt caaagaacat ctctctgtaa      4200
     caatttcaaa ggccattaca acgcttggat ttattattag gaacactaaa gactttgatg      4260
     atgtatatgt acttaaaaca ctatattgtt cgcttgtaag aagtatattg gagtacgcta      4320
     ttcaaatttg ggcaccacgt caaattggtg aacttagatt gcttgaaagc gttcagaaaa      4380
     ggttcctaag atatgcgttg cgctcccttc catggaatga cccgatacga ctcccgccat      4440
     atcttagtag atgtcagctg attagactag aatctttagg tggtagatct gaaatgctgc      4500
     gtagattatt tatttttgat ttactgcagg gcaatataaa ctgtagctca cttctagcag      4560
     ctgtgccaat tcatgctcca accagatcat tgagagaatt tgaattctta agaatcccga      4620
     actacggtca taggactttt tttaatccgt ttgtagaatg ttgtaggtta ttcaatgatg      4680
     tttattatgt gtttgatttt aatgttagta aaactatgtt taaggataga ataaggaata      4740
     atgcgcagtc tgagcgatag aaatatctta gacggtggtc aataaacaat aa              4792
//
ID   CR1-117_AAe repbase;    DNA;    INV; 5344 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-117_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5344
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1205-1205 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 18 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           296..2251
FT                 /product="CR1-117_AAe_1p"
FT                 /note="PHD zinc finger at the N-terminus."
FT                 /translation="MTKKCDGAPCFGGSTRSNKIECRNCRKSFHAKCANLN
FT                 GSQLKAIRDLPGVFXFCTVCRSIENRVDQQVHSSILDLVLHRINSLTRLVY
FT                 AQIDATRSLCRSLGNEHTHVSVPRMSFLDKSSIVDVVKTNFENALDQMQFE
FT                 FSRDFNDLVAENTHRNATDKPHTDDSSIVLNDNNKRDRTSSSDLSPNSEKR
FT                 MRVDVPNSSCENSNTVALPLTASQQCSAEIVTVSTSQANVILPNETVLPSA
FT                 NPPMPSPGAVAIAASYELPAVVGTAAANESANTVNNNAAITASAPANAVNA
FT                 ATNYQATTVNTPANTYHASCTRAPTIATQATKTTQAINXYQATFTNQAIIS
FT                 NHAVNTNQAFIASQATPAAFVSTTQNDFARPPAVTXLVTYAPSHQARFYPL
FT                 IHDSCSNAARMHSVGTQTSPNAVSRRSSLEYIRRDNTTTISTSSGNTTVAS
FT                 NHTVPATMFSPTMVNIADGPAQSHQSHPLPTRVNQLRNTAVISRQNGPVSP
FT                 TLSIANREDPRKWFYVSPFQPHETAQNISDYVSMKANCRIDQVICQKLVSE
FT                 NRSNGPPLTFISFKLSVPEDIVXTIRSDKFWPEGIVIKPFLYQRPPVNRLS
FT                 APYPSTSVPRTPITRIAIQRPELFPSARQLPKRYQMSSPLISRTQTIHPFQ
FT                 TLV"
FT   CDS           2014..5157
FT                 /product="CR1-117_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="IXQILARRNSYQAFFIPTPSCQSVISAIPINQRPSHS
FT                 YHQNSNTEAGIVPICSPTPKTLSNELPVNFQNANNSSISNASLRSSLGVKG
FT                 LSVFYQNVRGLRTKLDSFLVASTSSSYDVILLTETWLNDVISDRQLFGPEY
FT                 TVYRSDRSTSNSSKQLGGGVLIAVKQQFNSTRMMSNDYVHIEQLWVKITLP
FT                 EYSLYLCCFYLPPDLKHDLGILNAHITSIEQIYSSLKERDLLVICGDYNLS
FT                 CIDWRYDKVDADSLFAFPIESNNSVPSYANHLIDSFDSLNLYQMNEHRNSN
FT                 CRILDLIFMSDKAKDAASVHRALYPLLGEDKHHPSLEITFDSVCIKASPDP
FT                 FDPTALNFNKVDYELLAVSLGDIDWSEILSSSSVNDAVQRYTTKIIDVLQA
FT                 TIPKCKPKPSLPWITPKLLHLKSRRNAALRELRKNRCYVTRKRFHFVSDVY
FT                 RKENNRQYQKYIRRSEENLRRNPKSFWSFVNSKRKDSGLPVSMHYNTQEAS
FT                 SAKEKCNLFAKRFSSVFTADCLSECDINTATSDVPADISCLNNLHISAEDI
FT                 IKASKRLKPSSSPGPDGIPTCILKKCIQQLSLPLHHIFNLSISSGVFPAQW
FT                 KSSFMFPVFKKGDRQDMINYRGITSLCSSSKLLELIVNESLLHNFKSYIST
FT                 KQHGFFPRRSVTSNLVEFTSFVLRKMDQGTQVDAVYTDLKAAFDCLNHDIL
FT                 IAKLRKLGIGGILLDWFDSYLRDRALQVKIGSCCSSPFAATSGVPQGSNLG
FT                 PTLFSLFFNDVTRKIPHTCRSLYADDLKIFNAVRSPDDAQALQQFLTLFED
FT                 WCSRNKMSLSVDKCQVITFSRKLNNVNAVYRVNGVSLMRVTSIIDLGVILD
FT                 TKLNFVEHMTSTICKANRQLGFISKVCQSFRDPYCFRSLYCSLVRSILEFS
FT                 SVVWSPSYVTWNLRLESVQRRFIRRALSHLPWNDPIVLPPYENRCLLLNLE
FT                 TLSARRLKAEALFAAKIILGEIDSPSILSDFHFSAPTRILRSSSFFALPFR
FT                 RTNYGKSDPIRKMCVSFNRFSDCFDFTCNSSMFKSRMDRIRV"
XX
SQ   Sequence 5344 BP; 1514 A; 1259 C; 988 G; 1578 T; 5 other;
     gtcgaagttg tcgaagtttt tagccgattg ttttttcgct tcaagttcaa tatcaatatt        60
     agcccagaaa ttcgctttta ataattcgtt aaagcatcaa aagtgcatct ctctacgttg       120
     ataatcaaca ttactgtgtt atttgtggat tttgtgactc tgcagggcat ataacgccga       180
     aataaatttt gccaacggct tcgttgtgta gaagctgtta gtggccaacc gccattctgt       240
     agtgccttct cactgatcgt gaaaccagtt gaaacgcatt agttgtttgt caacaatgac       300
     gaagaagtgt gatggtgctc cctgttttgg aggatcgacc agaagcaata aaatcgaatg       360
     tcgaaattgc cgtaaatcat tccatgcgaa atgcgccaat ctcaatggaa gccaattaaa       420
     agcaattcgt gatttgcccg gagtgttctg kttttgtacc gtctgtcgta gtatagagaa       480
     tcgagtcgac cagcaagtgc atagttctat acttgatctc gttttgcatc gcatcaattc       540
     gctcacacga ctagtgtatg cccaaatcga tgccacccgt tctttgtgtc gttcacttgg       600
     gaacgaacac actcatgtaa gcgtacccag gatgtcgttt ttggacaaat catcaattgt       660
     tgatgtcgtg aaaaccaatt ttgagaacgc cctggatcaa atgcagttcg agttctcgag       720
     ggatttcaac gatttggtcg ccgagaacac acacagaaat gctacggata aaccgcatac       780
     cgacgattct tcaattgtgt tgaatgataa caacaagaga gatcgtacat ccagctcgga       840
     tttatctcca aattccgaaa aaagaatgcg agttgatgtt ccaaatagtt catgtgaaaa       900
     ttcaaatact gtagctctcc ctcttacagc tagccaacaa tgctcagctg agatcgtcac       960
     cgtatccacg tcgcaagcta acgtcatttt accgaatgaa actgttttgc catctgccaa      1020
     tccgcctatg ccttctcctg gtgctgttgc tattgctgct agttacgaac tccccgctgt      1080
     tgttggaacc gctgctgcca acgaatctgc caataccgtc aataataatg cagccatcac      1140
     cgccagtgct cctgccaacg ccgtcaatgc cgccacaaat tatcaagcca ccaccgtcaa      1200
     tactcctgcc aacacctacc atgccagttg tacacgtgcc cccactatcg ccacccaagc      1260
     taccaaaacc actcaagcca taaacgscta tcaagccacc tttaccaacc aagccattat      1320
     ctcaaatcat gccgtaaata ccaatcaagc cttcatcgcc agtcaagcca ccccagccgc      1380
     ctttgttagc acaactcaaa acgattttgc tcgcccacct gccgtcactw gcctggtgac      1440
     ctacgctcca tctcatcaag ctcgctttta tccgcttatt catgacagtt gctctaacgc      1500
     tgcaaggatg cactctgttg gtacacaaac ctcaccaaac gctgtgtctc gccggagcag      1560
     tttggaatat atccgtcgtg ataacaccac aaccatctca acaagctcag gtaatactac      1620
     agttgcctct aatcataccg ttccagccac gatgttttct ccaaccatgg tcaacattgc      1680
     tgatggaccc gcccaatcac atcagtctca tccgcttcca acaagagtta atcagctacg      1740
     caacactgcc gttatcagta gacagaatgg cccagtgtca cctacattat cgattgctaa      1800
     ccgtgaagat cccaggaaat ggttctatgt ctcgcctttc caaccacatg aaacagctca      1860
     aaatatttcc gactatgtat ccatgaaagc aaattgtcgc atagatcaag tgatatgtca      1920
     gaaactagtc agtgaaaacc gttcaaatgg accacctctc acatttattt cctttaagtt      1980
     aagcgtgcct gaggatatag ttmctactat tagatckgac aaattttggc cagaaggaat      2040
     agttatcaag ccttttttat accaacgccc tcctgtcaat cggttatcag cgccataccc      2100
     atcaaccagc gtccctcgca ctcctatcac cagaatagca atacagaggc cggaattgtt      2160
     cccatctgct cgccaactcc caaaacgtta tcaaatgagc tccccgttaa tttccagaac      2220
     gcaaacaatt catccatttc aaacgctagt ttaaggtctt ctttaggagt caaaggactc      2280
     agtgtgtttt atcaaaatgt tagaggtctt cggaccaaat tagactcctt tctagttgct      2340
     agtacctcct catcatatga cgtcatattg ttaactgaga cttggttaaa tgacgtcatc      2400
     tctgatcgac aattgtttgg cccggaatat acagtgtacc gaagtgatcg atcgacaagc      2460
     aatagctcaa agcaactcgg tggtggagta cttattgctg taaaacagca gtttaactca      2520
     actcgtatga tgtcaaacga ctacgttcat attgaacaat tgtgggtcaa aataacgcta      2580
     cctgaatact ctttatattt atgttgcttt tatctgcctc cggatttgaa acatgatttg      2640
     ggcatcttaa atgctcatat aacatcgatt gagcagatat attcctctct caaggaacgc      2700
     gatctattgg tcatatgtgg tgactataat ctctcgtgca ttgattggcg ttacgacaaa      2760
     gttgatgcag attctctttt cgcttttcca atcgagtcca ataactctgt accttcctac      2820
     gccaaccatc taatagacag ttttgactct ttgaacttat accaaatgaa tgagcatcgt      2880
     aatagtaact gtaggatttt agacctaatt tttatgagtg ataaagctaa ggacgcagcc      2940
     tctgtgcatc gcgcattata ccctcttctt ggtgaagaca agcaccatcc gtctttggaa      3000
     ataacttttg attcggtgtg tattaaggct tctcctgacc ctttcgatcc cactgctctg      3060
     aatttcaaca aagttgatta tgaactgtta gctgttagtc taggagatat agattggtca      3120
     gagattctta gttcttcaag tgtgaatgat gccgttcaac gctacacaac taagataata      3180
     gacgttctgc aagcaactat tccaaaatgt aagcccaagc cttctcttcc gtggattact      3240
     ccaaaactgc tccatttaaa atctcgaagg aacgctgctt taagggagct tcgtaaaaat      3300
     aggtgctacg tgacgcgtaa acggtttcat ttcgtaagcg acgtttacag aaaagaaaac      3360
     aaccgccaat accaaaaata catccggcgt tcggaagaga atctccgacg taacccaaaa      3420
     agtttctgga gtttcgtcaa cagcaaacga aaggatagcg gactaccagt gtctatgcac      3480
     tataacaccc aagaagcatc cagcgcaaaa gaaaaatgca acttgtttgc taaacgtttt      3540
     tctagtgttt ttactgctga ttgtctgtct gaatgtgaca ttaatactgc aaccagtgat      3600
     gttcctgccg acatttcgtg cttaaacaat ttacacataa gcgcagagga cattattaaa      3660
     gcttccaaac gattaaaacc tagttcctct cctggcccag atggtatacc aacttgcatc      3720
     ctgaaaaaat gtatccagca attgtcactt ccgctccatc atatcttcaa cctgtctata      3780
     tcctcaggag tttttcctgc tcagtggaaa tcgtcgttta tgtttccagt tttcaaaaaa      3840
     ggggatcgcc aagacatgat caactatcgt ggaataactt cgttatgttc ttcttcgaag      3900
     ctgcttgaat tgattgtaaa tgaatccttg ctacacaatt tcaaaagcta cattagcaca      3960
     aaacaacatg gcttttttcc acgtcgatcc gtcacatcaa atttggtcga gttcacttca      4020
     tttgtactcc gcaaaatgga tcaaggtaca caggttgacg ctgtgtacac ggacctcaaa      4080
     gctgctttcg attgtctcaa ccacgatatt cttatagcaa agctaagaaa actcggcata      4140
     ggtggcatac tattagactg gttcgattct tacttacgag atagggcgct gcaagtaaaa      4200
     attggctcct gctgctcatc cccctttgcc gctacatcgg gtgtgccaca aggcagtaac      4260
     cttggcccca cactgttctc gttgtttttc aacgacgtca caaggaaaat acctcacacc      4320
     tgccggtcat tatacgcgga tgatttaaag atattcaacg ctgtccgttc tcccgatgac      4380
     gcgcaagcgc ttcaacagtt tcttacgctt tttgaggatt ggtgtagccg aaacaaaatg      4440
     tcattaagtg ttgataaatg tcaggtcata acattttccc gcaaactgaa caatgttaat      4500
     gctgtctaca gagtaaatgg agtttctctg atgcgtgtga cgtcaatcat cgatttggga      4560
     gttatactgg acaccaagtt aaattttgtt gagcacatga cttcaactat ttgtaaagct      4620
     aaccgccagc tcgggttcat ttcaaaagta tgtcagtcgt ttcgtgatcc atattgtttt      4680
     cgttcattat attgttcatt agttcgttca attcttgagt tttcttctgt tgtgtggtcg      4740
     cctagttatg ttacatggaa tttacgtttg gaatctgttc aacgtcgctt cattcgccgt      4800
     gccctatccc atcttccatg gaatgatcca attgttctgc ctccctatga aaaccgatgc      4860
     ttattgctca acctcgaaac actttcggca cgtcgcttaa aagctgaggc cttgtttgcg      4920
     gctaaaatta ttctaggtga aattgattca cctagtatac ttagtgactt ccatttctca      4980
     gctccaactc gtatacttcg ctcgtcatcc ttctttgctc ttccattccg acgtacaaac      5040
     tatggtaaaa gtgaccctat acgtaaaatg tgtgtctcat tcaatagatt ctccgattgt      5100
     ttcgacttta cttgtaatag ctccatgttt aagagtagga tggataggat tagggtttag      5160
     aataattaga ttaaggatca ttgttcaatt aggcataaga ttgtccgttg aatgtatgta      5220
     tattgttgtg atgttgttta aaaagataca ggttttttaa tcagctttgc tggtttttcc      5280
     tgtcacaaaa gaaaacgaat acaacaaata aataaataaa taaataaata aataaataaa      5340
     taaa                                                                   5344
//
ID   CR1-118_AAe repbase;    DNA;    INV; 4803 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-118_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4803
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1206-1206 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           425..1288
FT                 /product="CR1-118_AAe_1p"
FT                 /note="PHD zinc finger at the N-terminus."
FT                 /translation="MACPRCQKVTSDNDYIICRGYCGASFHTFCAKVDQPA
FT                 LETLKQYDQNIFWMCDDCASLFSNGHFRNLASRCGVDHASPNTDAINSLKD
FT                 DLEKLNQAVKSLTAKVDSQPKTPAGSLKFQYNDVLKTPFSSKRRRISESST
FT                 PQVVTRPVNNRGTSKTLCESVKTVQLKDDLFWIYLSAFDPSTTDDEIVEFV
FT                 RKCLNISIEQPIPKVVKLVSKVRDVSTMRFVSFKVGVAKSLSEIALCADSW
FT                 PENIYFREFENRPKNVPPIVKINMNPNPPAKDVETTSAVPLDQQSQQ"
FT   CDS           1153..4722
FT                 /product="CR1-118_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="EYLLQGIRKSSKKRSTDSKDQHESQSACERCRNHFGC
FT                 SVGSAKSTMTTFYASSAAVTPSTPGRIACSTEGDPYPPNPVVPVADCSCHH
FT                 SRPGPVVLVCDGISRQHPSGKYTCNRTVALPNYTSCSSEQQYFASLLSSES
FT                 QSSSHTSSPGRTVYSTLEAPESLDPVVNAAVPCHHRRPGPVVGDDEGVFQP
FT                 VTTGKYWSSCKFLSPDISSSCSSREPALDRRLAPAPASRDLSAKLRIYYQN
FT                 VRGLRTKIDDVFLSTSDLDYDAYVFTETWLDDRIQSRQLFNNNYMVFRVDR
FT                 SSTSSSRRRGGGVLIGVHKKFGSSQVEIATEVRVEQLWVKVSIRATDIFIG
FT                 VLYIPPDKSQDRTFVQYHLDSVSNICTLQNGSSSMILFGDFNQPRLFWKTN
FT                 NRYAFVDPLQSHVSSSSQILLDGMAFHGLRQRNLNRNCSERILDLVFSTDS
FT                 IMTNGFASLAIEKVVPLDRYHPALEFAVAALPPVSFYEDIDLSERDFRRGD
FT                 FNVLDQMLLQADWSGVYQSNDVDGAVASFNAILHNCIMQTVPLKRPPRSRF
FT                 GQYIPSFLKRRRIKLLQQYCRRRCMNTKRLFLEASRIYRGYNRFLYKLYVK
FT                 RQQEDLRQKPKNFWNFVNTKRKENGLPVTMHLGDIEASTAEEKCTLFAQQF
FT                 SSVFANRVATTAEINEAVRAVPRDMVDLDVFHINEGMVDVAFKKLKMSYRP
FT                 GPDGIPSCIFKKCSTSLIAPLVAIFNKSMHLQQFPTAWKTSHMLPVFKKGD
FT                 KTDIVNYRGITSLSAGSKCLEIIVNNVMFTSCCSYLSEKQHGFYPKRSVES
FT                 NLCDFTSTCICAMDNGVQVDAVYTDIKAAFDTVNHDILLAKLLRLGVSARM
FT                 CQWLKSYLSYRNLCVKIGPVVSNPFHPACGVPQGSNLGPLLFSLFFNDVTI
FT                 LLANGGLLIYADDLKLFLVVRTEADCRELQDLLDTFARWCCLNFLIISVPK
FT                 CCVISFRRSKSPILYDYSINGQKLERVDKVKDLGVLLDCQLTFKLHYSAIV
FT                 DKANRQLGFVFKMAKDFDDPLCLRALYCSLVRSILEFASTVWSPYEAVWIA
FT                 RIEAVQRKFVRRALINLPWRHPEMLPPYEDRCALLGIEPLRVRRRIDRAVY
FT                 GAKIIRSEVDCAALLERIRLYAPERVLRSRQVIQVESRNTNYGANDPVNSI
FT                 SRCFVEGYELFDFNSSVESFRQRLYRSRLFN"
XX
SQ   Sequence 4803 BP; 1289 A; 1033 C; 1028 G; 1451 T; 2 other;
     atggaactga aatgctatga aaatctattc atggagacta tcgtattgac cataacagtt        60
     gatggmaccw ctgttgatgg ttatatcgaa gcttaacgac agctcttctg ttttttgata       120
     ttttacctat gaaatcggtt tttattattg tgaccaatag ttctatgttt taatgaatat       180
     tgtgctcaag tttttatgtt gttgatatga actatagtgt gttaattgta gtgattttgc       240
     gctgtgatag tgattgaagc attattgttg ttaccgttta caccgtcccc gcatcgtcac       300
     cagaagttgt aactgacagc aaatagctga ttccatcgct ttcttgcaag tttgctttca       360
     acacatccat acggtctgtg acataatcgt gcctacatct cggcgtttcc tgctcattgc       420
     aattatggct tgtcctcgtt gccaaaaagt tacttcggat aacgattaca tcatttgtcg       480
     tggttattgc ggagcttctt tccatacctt ctgcgcaaag gtggatcaac cagcgcttga       540
     aacgttgaag caatatgatc agaatatttt ttggatgtgt gacgactgcg ctagcttatt       600
     ctctaacgga cattttcgta atctggcttc gcgttgtggt gttgaccatg catctcccaa       660
     taccgatgca atcaattcat tgaaagatga tctggaaaaa cttaatcaag ctgtgaaatc       720
     tcttacggcc aaagtcgatt ctcagcctaa gactccagct ggttctttga aattccagta       780
     caatgacgtc cttaaaacac cgttttcatc gaaacgccga cgtatctctg agagtagtac       840
     gccccaggta gtcactagac ctgttaataa tcgtggcacc agcaaaacgt tatgcgaatc       900
     agttaaaact gttcaattaa aagacgactt attttggatc tacctttcgg catttgaccc       960
     gagtaccact gacgacgaaa ttgtggagtt tgttcggaaa tgtctcaaca tcagcattga      1020
     acaaccaatt ccaaaggtgg tgaagctggt gtctaaagtc agggacgtat ccactatgcg      1080
     tttcgtctct tttaaagtgg gagttgctaa atccctaagt gaaatcgcac tttgtgccga      1140
     ttcgtggcct gagaatattt acttcaggga attcgaaaat cgtccaaaaa acgttccacc      1200
     gatagtaaag atcaacatga atcccaatcc gcctgcgaaa gatgtcgaaa ccacttcggc      1260
     tgttccgttg gatcagcaaa gtcaacaatg acaacttttt atgcatcctc tgccgccgtt      1320
     acaccatcta ccccaggacg cattgcctgc agtactgagg gagatcctta tccgccaaac      1380
     ccagtcgtgc ctgtagctga ttgttcctgt catcatagtc gtcctggtcc tgtggtcttg      1440
     gtttgtgatg ggatctcccg acaacatccc tcaggcaagt atacgtgcaa tagaacagtg      1500
     gccctgccta attatacctc atgttccagc gaacagcaat attttgcttc acttctctcg      1560
     agcgaatcgc aatctagcag ccatacgtca tcaccaggac gcacagtgta cagtactttg      1620
     gaagccccgg agtccctcga cccagtcgtg aatgcagccg ttccatgcca tcatagacgt      1680
     cctggccctg tggtcgggga tgacgaaggg gtcttccaac cggtgacaac gggcaagtat      1740
     tggtcttcct gcaagtttct ttcgcctgat atatcttcga gttgcagttc acgtgaaccc      1800
     gctttggaca gacgattggc gccggctcca gcttcaaggg acttgtcagc taaactacgt      1860
     atttattatc agaatgttcg gggcctaagg acaaaaattg atgacgtttt cctttctaca      1920
     tctgatctgg attatgacgc ttacgttttc accgagacat ggttggacga tcgtattcaa      1980
     tctcgtcaat tgtttaacaa caactacatg gtattccgtg ttgatcgctc ttctacgagt      2040
     agctcccgtc gtcgtggtgg cggcgttctt atcggcgtac acaaaaagtt tggatcatcg      2100
     caggttgaaa ttgctacaga agttagggtt gaacaattgt gggttaaagt ttccattcga      2160
     gcaactgata tctttattgg cgttttgtac attcctcctg ataaaagcca agacaggacg      2220
     tttgtacagt atcatcttga ttctgtgtcc aatatttgca cattacaaaa tggttccagt      2280
     tctatgatcc tgttcggcga tttcaatcaa cctcgcctat tctggaaaac taacaaccgc      2340
     tatgcttttg tcgatccact tcaatcacac gtatcttcgt cgagccaaat ccttcttgac      2400
     ggtatggctt ttcatggatt acgacaacgg aatttgaatc gcaactgcag tgagcgtatt      2460
     ttggatctag tattcagcac tgactcgatt atgaccaatg gatttgcctc gttggcaatc      2520
     gaaaaggttg ttccacttga tcgctatcac cctgccctcg agttcgctgt agctgcgctg      2580
     ccaccagtat cattttatga agatatcgat ctatctgaac gcgattttcg tcgaggtgat      2640
     tttaatgtat tggatcaaat gcttttgcag gcggattggt ccggagtgta tcaaagtaat      2700
     gatgtggatg gtgctgttgc ttcgttcaat gctatccttc ataattgcat catgcaaact      2760
     gttccgctga agagaccacc aagaagccgg tttggtcaat acatacctag ctttctgaaa      2820
     cgccgtcgca ttaaactgct acaacagtac tgtcgccgta gatgtatgaa cacaaagcgt      2880
     ctatttctcg aagctagtcg catttaccgt gggtataacc gtttcctgta taaactttat      2940
     gttaaaagac agcaagaaga tctacgacag aaaccgaaaa acttttggaa ttttgtcaac      3000
     acgaaacgaa aagaaaacgg actacctgta actatgcatt taggtgatat cgaagccagc      3060
     actgctgaag aaaagtgtac gctgtttgcc caacaatttt ccagtgtttt tgccaatcga      3120
     gttgcaacga cagcggaaat caatgaagca gttcgagccg taccacgaga tatggttgat      3180
     cttgacgtgt ttcatatcaa tgaaggtatg gttgatgttg catttaagaa actcaagatg      3240
     tcttatcgtc ctggaccaga tggtatccca tcatgtatat tcaaaaaatg tagtacatcg      3300
     ttaatcgcac cgctggttgc catctttaac aaatcgatgc atcttcagca gttcccaacc      3360
     gcttggaaaa cgtcgcacat gttgccagtg ttcaaaaagg gtgataaaac ggatatagtt      3420
     aactaccgcg ggataacttc cctttcagct ggttctaaat gcttagaaat catcgtgaac      3480
     aatgtcatgt ttacttcatg ttgttcctac ctcagtgaaa aacagcacgg cttctaccca      3540
     aagcgttcag ttgaaagtaa tctatgcgat ttcacgtcga catgcatttg tgctatggac      3600
     aacggtgtgc aagttgacgc tgtatacaca gacatcaagg ctgcttttga caccgttaac      3660
     cacgatatcc ttctggcaaa actacttcgg cttggtgtat cagcaagaat gtgtcaatgg      3720
     ctcaaatcgt atctcagcta tagaaatctt tgcgtgaaaa ttggaccagt tgtatcaaat      3780
     ccctttcatc cagcatgcgg tgtaccacag gggagtaatt tagggcccct attattttcg      3840
     ttatttttca acgatgtgac tattttgctc gctaatggtg gattgctgat ttacgcagac      3900
     gacctgaagc tatttttagt agtgagaact gaagctgact gcagagaact tcaagacctt      3960
     ttggatacct tcgcacgttg gtgttgccta aacttcctca taataagcgt tcctaaatgt      4020
     tgcgtcatct cgttccgtcg aagcaaatct ccaattctgt acgattacag tataaatgga      4080
     cagaaactgg aacgcgttga taaagtcaag gatcttgggg tgttgttaga ctgccaattg      4140
     acgtttaaat tgcattattc cgccatcgtg gataaagcaa accgacagtt ggggtttgtc      4200
     ttcaaaatgg ccaaagattt tgacgatcct ctttgcttgc gcgctttata ttgctctctt      4260
     gttagatcta tcttggaatt tgcatctact gtgtggtcgc catatgaagc cgtgtggatt      4320
     gcaagaatag aagctgttca aagaaaattc gtgaggcgtg ctttgataaa tctaccatgg      4380
     cgacatcctg aaatgctacc accttatgag gatcgttgtg ccttgctggg aattgaaccg      4440
     ttacgtgtac gtcgcagaat cgatagagct gtatatggag cgaaaataat tcgtagcgaa      4500
     gtagattgtg cagctttgtt ggagcgtatt cgactctatg cccctgagcg tgttttacgg      4560
     tccagacaag ttattcaggt tgaatccagg aatactaatt acggagcaaa tgatccggtg      4620
     aattctatta gtagatgttt tgtagaaggt tacgagctgt tcgattttaa ctcttctgta      4680
     gagtcattca gacagcgatt gtacagatct cgtttattta attaattatt ttaagatttc      4740
     ttcattaaga ccccgatgtc agatggaaat aacaacaata aagaaacaat aaagaaagaa      4800
     gaa                                                                    4803
//
ID   CR1-119_AAe repbase;    DNA;    INV; 4543 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-119_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4543
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1207-1207 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           748..1572
FT                 /product="CR1-119_AAe_1p"
FT                 /note="PHD zinc finger at the N-terminus."
FT                 /translation="MATSEVCHSCARSMSASEVVCGGFCKATFHFSCATIS
FT                 EELYKQICGKPAIFWMCNGCREMMGNARFKNALSSMNAATIELNDTYQKLL
FT                 EDMKSEIKQSLIAEIREEIKGGFNKLSPAVFSPLPRRFKFGNTNSPKRRLD
FT                 EEAATSNQPAKIIRGIGPSAANISVRVDSPADKFWVYLTKISPEVTETDIE
FT                 KLAKECLRVDEVAVKSLIPRGRPSSTLSFISFKVGVDPESKSKALDPASWP
FT                 QGIEFREFIEDEGRRTQHFWKPTPNVDSGPIIIS"
FT   CDS           1506..4478
FT                 /product="CR1-119_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RTKDSTFLETDAECGLRPDNHLVEPVDASSLSNSSPT
FT                 LPNLSHLTVYYQNVRGLRTKTNSLFLSLASCDYDIVVFTETWLHADISNAE
FT                 LSRNYAIYRCDRNSRTSALRRGGGVLIAVKSELNCKSVHLVDCESLEQIAV
FT                 QIVLPHQSLFVCSIYIRPCSQPDYFIKHAESVQGLLDMANPHDTVIVMGDY
FT                 NLPHLAWNYDEDVLGFLPLNASSEQELVVVESLLTTGLKQINYAVNSNGKL
FT                 LDLVFVSDSDTVELFEPPSAMMKVDQYHKPIVLKVDFQPGSKPQSYRTFHE
FT                 YDFARCDFSVINAKISALDWDQLLSLSNVDAAVSVFYDNIYQIIHDTVPVK
FT                 TRRPVMSLQQPWWNPQLRNLRNRLRKARKRYFRSRTSEKMRAVELAEAEYN
FT                 SLLEACFREYMDNIQTSLRDNPTSFWSFVNSRKKSSGIPTDLTYCNRSSSC
FT                 DASSANLFADFFRSVFDNNQPPTSQQYIDQLPSYNIFLPRPDFSLELIKQT
FT                 LGSVDVSKGPGPDRIPPSFIRNCASSLALPVASIFNRSLRDGVFPDAWKLA
FT                 SITPIFKSGNIHRVENYRPISILNCLAKVLESLLHDKLYPAVHGIISEFQH
FT                 GFVKKRSTITNLMSFTNTVIRSNEKRQQTDAVYIDFSKAFDKVPHAIAIAK
FT                 LSRLGLPAWVVSWIKSYLSSRKAFIKIRGAKSDVFAIPSGVPQGSILGPLI
FT                 FVLFVNDICDQLHCCKLLYADDLKIYRVIKSILDCCALQEDINRLTSWCRI
FT                 NGMLANAAKCKVITFARVNSPIKFDYTIDHAPLERVDAIKDLGLILDDKLR
FT                 FNKHISMVIAKANSMIGFLRRNTMEFTDVHALKSLYCSLIRSVLEYGVQVW
FT                 APYHAVHVTRIERIQKKFVRFALRRLPWTDPDNLPAYEHRCALIGLHSLSS
FT                 RRTFLQRLFIFDIVSNHIDCSSVLQCVNFHAPTRQLRNFNLLWTPGHRTAY
FT                 GFHNPVDRCCRLFNDVYDAFDFNISKLVFKNRIKDL"
XX
SQ   Sequence 4543 BP; 1215 A; 1117 C; 934 G; 1275 T; 2 other;
     gcaactctgc cgctctgtga gaactgtgat ckctgtcgtc gcatcgattt attatcaaat        60
     ttcgtcgttc tgtgccgcct aaattgctct gtcccgcata attttgtcca caagtgccca       120
     agccatccgt cacacaaact gtttgcactg tttagtcagg taggattagt gaaaatctta       180
     tttttccgag ctggcttgag tgtggtcaga gaaagccacc tccgccatcg ccctatataa       240
     acaatctccc acctcgccgc tctccacctg cactactgtc gcagttctgt gtatcgtacc       300
     gatcaccgat ataaacaaaa caaccgatcg tcagattaat aatttgcctg ttgccgcccg       360
     ccgattccga taaatcgtgt catttaaatc acctgtagca ttccaagcca atacaaaacg       420
     tttgtttctg ctggccttct cattgcgcaa tccgaaaaac ccgccaaagc ttcgccaaga       480
     ctgaaatcat catcatcgtc gtagaaatat ttcctcatcg ccgtcatcgt ttgcgtgaag       540
     ataaacaacg cttgctgtac cacaacttgt gtgcgcttgt atgtattgaa gatttttaga       600
     aaacaatcga tctcgtattg tgcccagtct gtcaacgtca tacttcagtc atcgatccgc       660
     actagtggcg ccatctagtt gtcactgctc gcactgcagt tagagcaacc ccactgttgt       720
     tgccatccag tgtagttaaa catattcatg gctacatcag aagtttgtca cagctgcgcg       780
     cgcagcatgt ctgcttctga agttgtttgc ggcggttttt gtaaagctac tttccacttc       840
     tcgtgtgcaa caatatcgga agagctttac aaacaaatat gcggtaaacc cgctatcttc       900
     tggatgtgta atggctgtcg tgaaatgatg ggtaatgctc gcttcaaaaa cgctctgtcg       960
     tccatgaatg ccgcaacaat tgaactcaac gatacgtacc aaaaacttct cgaagacatg      1020
     aaaagtgaga ttaagcagag tctcatcgca gaaataagag aggaaatcaa aggaggtttc      1080
     aacaagcttt ccccagctgt attttcaccc ctcccacgac gtttcaagtt tggaaatact      1140
     aattctccta agagacgact wgacgaagag gccgcgacat ccaaccaacc ggctaaaatt      1200
     attcgcggta tcggtccatc ggctgccaac atatcagttc gcgtggacag ccccgctgat      1260
     aagttttggg tatacctcac gaaaatatca ccggaagtta cagaaactga catcgagaag      1320
     ctcgccaagg aatgtttgcg tgtagatgaa gtcgctgtta aatcgttgat tccgagaggt      1380
     cgaccgtctt cgacactgtc tttcatttcc ttcaaagttg gtgtagaccc ggaatctaaa      1440
     tctaaggctt tggatcctgc atcctggccg caagggatcg aattccgaga gtttatcgaa      1500
     gatgaaggac gaaggactca acatttttgg aaaccgacgc cgaatgtgga ctccggcccg      1560
     ataatcatct cgtagaacca gtcgatgcaa gtagtctttc caactcttct ccaacgctgc      1620
     ccaatctttc tcacttgacc gtttattacc agaacgtcag agggttaagg acaaagacaa      1680
     attcgctatt tctctcgttg gcttcctgtg attacgatat tgtggtattc accgagacgt      1740
     ggctgcacgc tgacatttcg aatgctgagc tatcgagaaa ctatgccatc taccgctgtg      1800
     accggaattc tcgaactagc gcacttcgac ggggtggtgg cgtgttgatt gcggtgaaat      1860
     cggagctaaa ctgcaaatcc gtgcatcttg tagattgtga aagtctcgaa cagatcgctg      1920
     tacaaattgt cctgccacat caatcgcttt tcgtttgttc catctatatt cgtccttgca      1980
     gtcaacccga ctacttcatc aagcacgctg aatctgtaca agggcttctt gacatggcca      2040
     accctcatga tacagtgatc gtaatgggtg attacaactt gcctcatcta gcctggaatt      2100
     acgacgagga cgtgctagga tttctgcccc tcaacgcttc gtctgaacaa gaacttgttg      2160
     tagtggaatc gttgctgact actggactta agcagatcaa ttatgctgtc aactcaaacg      2220
     gtaagttgct tgacttagta tttgtcagtg actcagatac cgttgaactg ttcgaaccgc      2280
     cctctgccat gatgaaagta gaccaatacc ataagccaat agttttgaaa gtcgacttcc      2340
     aaccgggtag caaaccgcaa tcatacagaa cgttccatga atacgatttt gcaagatgtg      2400
     atttcagtgt catcaatgca aaaatatcgg ctttagactg ggatcaattg ctttcccttt      2460
     ccaacgtaga tgctgctgta tccgtgtttt atgacaacat ttatcaaata atacacgata      2520
     ctgtccccgt taagacccgt agacctgtta tgagcctcca acagccatgg tggaacccgc      2580
     aattgcgcaa tttgcgaaac cgtctacgta aagcccgaaa acgttatttt cgttccagaa      2640
     cttctgagaa gatgcgtgct gtagagctgg ctgaagcaga atataatagt ctgcttgaag      2700
     cttgtttccg cgagtacatg gataacattc agactagttt aagagacaat ccgacgtcct      2760
     tttggtcctt cgtaaactct cgcaagaaat catctggcat tcctacagac cttacctact      2820
     gcaaccgtag ctcttcctgt gatgcctcct cggcaaattt atttgctgat ttcttccgga      2880
     gcgtcttcga taataatcaa ccgcctactt cacagcagta catagaccaa ttaccatcct      2940
     acaacatctt tctgccacgg cctgacttca gcctcgaatt aatcaagcaa accctcggct      3000
     cagttgacgt ctcgaaagga cctggcccag atcgcatccc gccgtccttc atcaggaact      3060
     gtgcatcttc gttggcatta cctgtcgcat ccattttcaa ccgctcgctt cgggatggag      3120
     tttttccaga tgcctggaag cttgcctcaa tcacgccgat cttcaagtcc ggaaacattc      3180
     acagagttga aaactatcgt cctatctcga ttctcaactg cctggctaaa gttttggaaa      3240
     gccttctaca cgacaagttg tatcccgcag ttcatggtat catctcggaa ttccagcatg      3300
     gatttgtgaa aaagcgctcg acaattacga acttgatgag cttcaccaat accgttatcc      3360
     gcagcaatga gaaacgccaa caaacagacg ccgtttacat agacttttcc aaagcttttg      3420
     acaaagtacc acacgctatc gctatagcaa aactgagccg cctcgggctt ccggcatggg      3480
     ttgttagctg gataaaatca tatttatcgt caaggaaagc attcatcaag attcgcggcg      3540
     ctaagtccga cgtgtttgcc attccttcgg gtgtcccgca aggtagtatc ctgggacctc      3600
     taattttcgt acttttcgtc aacgatattt gtgatcagct acactgctgt aaattactgt      3660
     atgccgacga tctgaaaatt taccgtgtga tcaaatcgat tcttgattgt tgtgcactcc      3720
     aggaggatat caatcgatta acttcatggt gtcgaatcaa tgggatgtta gccaatgctg      3780
     ccaagtgtaa ggttatcact ttcgcacgtg tgaatagccc aatcaaattc gattatacga      3840
     tcgaccatgc cccgcttgaa agagttgatg ccatcaagga tctcgggctc atcttggacg      3900
     acaaattgcg attcaacaag cacatatcta tggtcatcgc gaaggcaaac tcaatgatcg      3960
     gctttttgcg tcgcaacact atggaattca ctgacgtgca cgctttgaag tctctctatt      4020
     gctccttgat tcgaagcgtt cttgaatatg gagtacaagt ctgggctccg tatcatgcag      4080
     tacacgtaac gcgaatcgaa aggatccaaa aaaagtttgt tagatttgct ctccgacgac      4140
     ttccgtggac tgatcccgat aatctacctg catatgagca tagatgcgcg ctaataggac      4200
     tacactcctt gtcaagtcgt cgcacttttc tgcaaaggct atttattttt gacattgtca      4260
     gcaatcacat tgactgtagc agtgttcttc aatgcgttaa ttttcatgcg cccactcgac      4320
     aacttcgcaa cttcaacttg ctgtggaccc ccggacatcg tactgcatac ggatttcaca      4380
     acccggttga cagatgttgc agattattca atgatgtgta tgacgccttt gattttaaca      4440
     ttagtaaact agtttttaaa aataggatta aggatcttta agcagtctgt gtgacttttt      4500
     tttgtcaaag atgtagaata acaaataaat aaataaataa ata                        4543
//
ID   CR1-11_AG   repbase;    DNA;    INV; 4340 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-11_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4340
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 16(7), 1388-1388 (2016).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1157
FT                 /product="CR1-11_AG_1p"
FT                 /translation="MTHCRICSLDTEEAVIICGGDLNISSCKQAFHPKCLK
FT                 MPKSSIKSVSHNNNIVWICNTCTNNNSDNGLVLGEKAPRLIETISEMKNEI
FT                 SHLLNXLKREMIAEVDLRIRTNYSEYPHTLTRNHATNTSQFNERLASTTTL
FT                 NTTPVHPVKTTHSTTSSSEMPPGCSYTRNITHTLSSTSPREQTQRRIGVDS
FT                 AASANHSFNHRNALLTGAATDASSSFEGFVPNVEPRVWTFVTHIAPHVTEE
FT                 DMTTFITNRLENKNCMVKKILPRDRDPATLRFISFKVSLPNALKXKALSPA
FT                 TWPRGFVYAEFEFRNKKINDFFTPHTLYNSPV"
FT   CDS           1404..4151
FT                 /product="CR1-11_AG_2p"
FT                 /translation="MLFPRRCFLTTTASQFTVPIVPLLIVQRQEEGEFLLQ
FT                 LKKIASSPCTPLSNITESLWIQLRTPTNSLIVGAIYLAPDRCNDTHTINAL
FT                 CSTLRCVRDKYTDDTMILMGDFNQSQLVWSTSNENVAVLNTSESRINPSCS
FT                 VLLDEFNYAGLSQLNCYMNPHGSILDLILADDGIPYHLLKLELVLDPWIQP
FT                 DSYHPAIALRIFSESNHTTTPQHTSNIQSRNFRKTNFIGLSSALTDVDWSH
FT                 ITRDPDLNQNILLFTNKITSFYDQFVPRYRTPTKPPWSNSRLKDLRKQKKR
FT                 LHKMFRQHKNEVNRRIFIKAARLYQTFNRRAYANYVRKIENRFKRDPRTFF
FT                 SFARQKRDSNRLPSMMLLNGRSYTGNVEISQAFADYFSSTYVINSPPVTNA
FT                 VTSNHIPDAADIPLPVLSEADIASAINELKLSFAAGPDAIPSAIFKRCRDA
FT                 LTPVLTTLFNKSLQQKRFPQAWKSSFMFPVYKNGNRNDICNYRGIYMLCAV
FT                 SKIFEITISKHLSSGFKNIISNDQHGFLPNRSIETNLLSLLSTCYPAMDNG
FT                 KQVDVIYTDFSAAFDSVNHSMLISKLSSYGVNGALVHWLSCYLSDRHITVN
FT                 ISSSLSAPFTNTSGVPQGSILGPILFNIFINDVIYVIPDCEKLFYADDMKM
FT                 FLPISDQTDCFTLQNCLTRFNSWCNSNCMRLNISKCSVISYTRKRTPIVYD
FT                 YKIDDRSVPRKNVIRDLGVHLDSRLTLQNHYEAILSKAFRLLGFILRVAKD
FT                 FKDPFSIKALYCAIVRPTLEFASIIWTPTQQYLIDRLESVQRKLTRSLFYR
FT                 LPWSRNSVCPSYRTRCLLFGLEPLQHRRKTAQCLFIHKLVSGSLDAPSILS
FT                 KLNFQAPSRMLRTRTLFNIEFRSTNFGSNDPLLKMISAYNSLGNNVDLNSN
FT                 LNNLRTFLHSLI"
XX
SQ   Sequence 4340 BP; 1292 A; 1013 C; 760 G; 1270 T; 5 other;
     caaatcagat aatttttgcg ttattgtgat cgcgcttnta gtatcactag tttgaagact        60
     ctgaaagtag agaattagct gctgtagtat gctgtaacac ttgattagtg gcattaaaat       120
     cggtctgttt cgggtataat ttcctgtttt cgtcgtgctc tgctgttatt gctcgtcaat       180
     tcaccatgac tcactgccgg atttgctcac tggacaccga ggaagcagtt atcatatgtg       240
     gcggtgactt gaacatctct tcgtgcaaac aggctttcca cccaaagtgt ctgaaaatgc       300
     caaaatcgag cataaaaagt gtttcacata ataataatat tgtttggatc tgcaatacgt       360
     gcaccaacaa caactccgat aatggcttgg ttcttggtga gaaggcaccc cgcctcatcg       420
     aaacgattag tgagatgaag aacgaaatat ctcacctact aaatganttg aagagagaaa       480
     tgattgcaga ggttgatcta cggatacgca caaactattc cgaatatcct cacacactca       540
     ctaggaacca tgccactaac acttcacagt tcaacgaaag attggcttcc actactacac       600
     tgaacactac gcctgtccat cccgtcaaaa ctactcacag caccacgagc tcttcggaaa       660
     tgccgcctgg atgttcttat acacgcaata tcactcacac tctttcatct acttcaccac       720
     gcgaacaaac acaacgaaga atcggtgttg acagtgctgc ttcggctaat cattccttta       780
     atcatcgaaa cgcattgctt accggtgcag caactgatgc aagttcatcg tttgaaggct       840
     tcgttccaaa tgttgagcca cgagtatgga cgtttgtcac tcacatcgca ccgcacgtta       900
     ctgaagaaga tatgacaact tttattacca atcgccttga aaataaaaat tgtatggtaa       960
     aaaaaatact tcctcgtgat cgcgatcctg caacgcttcg attcatctcc ttcaaggtca      1020
     gtctcccaaa tgcacttaag antaaagcac tttcacctgc aacttggccc cgcggtttcg      1080
     tatacgccga atttgagttc cgtaataaaa aaatcaacga tttttttacg ccacataccc      1140
     tatacaactc accagtatga ctatgagatc acagatcgtc ccgaacactc tcacacccga      1200
     agagaacagc ccgaacaccg aacatcatac tgtttcgctc tccgacactc tcccaacgat      1260
     cacacactcg cagcctcccc tgagtgaact ttcgatctat tatcaaaatg tgcgtgggct      1320
     acgcactaaa acagctgatt tatatgcagc aagttatgaa tcggaatatg acgttatagt      1380
     tttaaccgaa acatggctcg acgatgctat ttcctcgacg atgctttttg acgacaaccg      1440
     cttcacagtt taccgtaccg atcgttccac tactaatagt acaaagacaa gaggaggggg      1500
     agttcttatt gcagttaaaa aaaattgcct ctagcccttg cactcctctc tcaaacataa      1560
     ctgagagtct gtggattcaa ctgagaaccc ctacgaattc tcttatagtt ggtgctatct      1620
     acctcgcacc ggatcgttgc aacgacaccc acacaataaa tgctttatgc tccactcttc      1680
     ggtgtgtgcg ggataaatat actgatgata cgatgatcct tatgggggat ttcaatcagt      1740
     ctcagctcgt atggagcaca tccaatgaaa atgttgcagt tttaaataca tcggaatccc      1800
     ggattaatcc ttcctgttca gttctcctcg atgaattcaa ctatgcagga ctgtcccaac      1860
     taaactgcta catgaatcct catggttcta tactggacct tattttggct gatgatggga      1920
     ttccttacca cttattaaag ttggagctcg ttcttgaccc ttggattcaa cccgactcct      1980
     accacccggc gattgctctc cgcatatttt ctgaatcaaa ccacactaca acaccacaac      2040
     atacntcaaa tatccagagt cggaacttcc gaaagacgaa ttttataggt ctctcatcgg      2100
     cccttaccga cgttgactgg agccatatca ccagagaccc ggatctcaac caaaacattt      2160
     tgttgtttac aaacaaaatc acaagctttt acgatcagtt tgtccctcgt tatcggaccc      2220
     caaccaagcc accctggtct aactcacggt taaaagacct gagaaaacag aaaaaaagac      2280
     tccataaaat gttccgtcaa cataagaacg aggtcaatag aagaatattt attaaagctg      2340
     cccgtctgta ccagacattt aatcgccgag cctacgccaa ctacgtaaga aaaatagaaa      2400
     accgatttaa aagggatcca agaacgtttt ttagttttgc tcgacaaaaa cgagatagta      2460
     acagacttcc atcaatgatg cttctgaacg gaagatcgta caccggtaat gttgaaatca      2520
     gtcaagcatt tgctgattac ttttcatcaa catacgtgat taactcgcca ccagtcacta      2580
     atgctgttac gtccaaccat atacctgatg ctgccgacat tcctcttcct gttctgtctg      2640
     aagctgacat tgcctcggct atcaacgagt tgaagctttc attcgctgct gggcctgacg      2700
     ctatacccag tgctattttc aaacgctgca gagatgcttt aactcctgtc ttgaccacat      2760
     tgttcaacaa gtctttgcag cagaaacgct tccctcaagc atggaaatct tcattcatgt      2820
     tcccggttta caaaaatgga aatagaaatg acatatgtaa ttaccgtggt atttatatgt      2880
     tatgtgcagt cagcaaaatt ttcgagatca ccatttcgaa acacctatca agtggtttta      2940
     aaaatataat ttccaacgat cagcacggct ttctacccaa ccgctcaatt gaaacnaacc      3000
     ttctctcttt attgagcacc tgctatcctg caatggacaa cggtaaacag gtagacgtaa      3060
     tctacaccga cttcagtgct gcctttgact ccgtaaatca ctcaatgcta atttcaaaac      3120
     tatcaagcta cggagtaaat ggggcgctag ttcattggct ctcctgttat ttaagtgata      3180
     ggcatataac agtgaatatt tcctcctctc tatctgcacc attcaccaac acgtccgggg      3240
     tcccacaagg cagtattctc ggacctattc tttttaacat tttcataaac gatgttattt      3300
     acgttatacc agattgcgaa aaattgtttt atgcagatga tatgaaaatg ttcctaccga      3360
     tatcagatca aaccgattgt tttactcttc aaaactgttt aactcgattt aactcatggt      3420
     gtaattcaaa ttgtatgcgt ctcaacatat ctaaatgctc tgttatatcc tacactagaa      3480
     aaagaactcc cattgtttac gattataaaa ttgatgatag atcagtgccg cgtaaaaatg      3540
     tgattcgcga tttaggcgtt catttagata gcagactaac gttacagaac cactatgaag      3600
     caatactttc aaaagccttc cgtttgttag gattcatttt gcgtgttgcg aaagacttca      3660
     aagatccatt cagtataaaa gctctgtatt gtgcaattgt ccgtcctacc ttagaattcg      3720
     ctagtattat ttggactccg acacagcaat atttaataga taggctagaa tcggttcaac      3780
     gcaagctcac tcgttcattg ttttaccgtc tcccgtggtc tcgtaattct gtttgtccct      3840
     cttaccgtac aaggtgcctg ttatttggac tagaacctct gcaacataga agaaagacgg      3900
     cacagtgctt atttatacac aaacttgtta gcggatcttt agacgccccg tcaattctga      3960
     gtaaattgaa ctttcaggcc cccagtagaa tgttaagaac caggacatta tttaacatag      4020
     aattcagatc gactaatttt ggatctaacg atcctttatt aaaaatgata agtgcctata      4080
     actcgctagg aaacaatgtc gacttgaact caaacttaaa caatttacgg acctttttac      4140
     atagcttaat atgacgcttc cacagtttat gttgtttttt tatttttatt tggttgattg      4200
     acagttaaac ttgttatgtt tttcgatgcg tttttgttag cactgttctt tagcattaac      4260
     tatagaaata agtatgttat gtaagcttat gccagctgga taactttcgg aataaataat      4320
     aataataata ataataataa                                                  4340
//
ID   CR1-11_CQ   repbase;    DNA;    INV; 2423 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-11_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2423
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 13-13 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2402
FT                 /product="CR1-11_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="HSHDGFLYPDPRLQAKSVNITDLLDVYSTATLEQINS
FT                 FPNENNNTLDLCFVSRQDVAPPIYVAPAPLVKTVPHHQPLILSLDVLRYPA
FT                 RTVTFEPIRYDYRKADINGIAEILTSIDWTNTLDPDDVNVAVQTFSNILSY
FT                 AIDRHVPKKAILPPDRIPWQTNELKKLKSKKRAALKKFSRRRTLPLRDHYL
FT                 RLNQRYKTLNNHCYNRYRYRIQQKLKSNPKAFWKHFNDQRKESGLPSSMFL
FT                 DNETASNPDTICQLFAEKFSRMFINETLSPHEVAAATENVPPCGNVLDRLV
FT                 LDDQRIMNAAAKLKSTSSVGPDGIPSSILKKCIQCLLSPLRLLFQHSLDKG
FT                 VFPDLWKTAFMFPVYKKGNKRDIDNYRGISALCAVSKLFELAVLDLVFFHC
FT                 KQQICAEQHGFMPGRSTTSNLLTFTTYLTKGLASRSQTDVIYTDLSAAFDR
FT                 LNHDIAIAKLKKLGFSGSLLGWFQSYLSRRTISVKIGECVSLLFLAYSGVA
FT                 QGSHLGPLIFLLYFNDSNFVLDGPRLAYADDLKIFRYVNSTDDAELLQQQL
FT                 DQFADWCATNRMTLNPQKCSVISFTRKLRPITHNYTLLGTTVPRVECINDL
FT                 GVLLDAKLTYKNHVAYIVAKASRLLGFIFRATKKFTDVYCLKSLYCGLVRS
FT                 TLEYSSVVWNPWYQNSSERIESVQRRFIRFALRLLPWSDPHRLPSYESRCQ
FT                 LIHLDSLAVRRNAARVTAVADLLTSRIDCPSLLGELNLQARSRVLRGGAFF
FT                 RIPLEAANYSAHGSIIGLQRTFNRVASIFDFNVSRDVLKKQFLEFFRCN"
XX
SQ   Sequence 2423 BP; 623 A; 698 C; 519 G; 579 T; 4 other;
     tgcactctca cgatggattc ctgtatcctg atccacgcct ccaggckaag tccgttaaca        60
     tcaccgatct gttggacgtc tacagtaccg ccacgctgga gcagataaat agcttcccaa       120
     acgagaacaa caatacgctt gacctctgct tcgtcagccg gcaggacgtt gcgcctccaa       180
     tatatgtcgc cccagckcct ctagttaaga ccgttcccca tcaccagccc ctgatcttgt       240
     ccctkgacgt actccgctat cccgcacgca ctgtgacatt cgaaccgatc cggtacgatt       300
     accgcaaggc cgacattaac ggaatcgctg agatattaac gagcattgac tggactaata       360
     cgctagaccc agacgatgtt aatgtggcgg tgcagacctt ttctaacatt ctctcgtacg       420
     caattgaccg tcacgtaccc aaaaaagcaa tcctgccccc cgatcgcatc ccgtggcaga       480
     ccaacgagtt gaagaagctg aaatccaaaa aacgagccgc tctcaaaaag ttttcccgaa       540
     ggcgcacact accactcaga gaccactacc ttcgactgaa ccaacggtac aagaccctga       600
     acaatcactg ttacaaccgc tatcgatacc ggatccaaca aaaactgaaa tctaatccga       660
     aggccttctg gaaacacttc aatgaccaga ggaaagaaag tggtttgcct tcctctatgt       720
     tcctcgacaa cgagaccgct tcaaatcccg ataccatctg tcaactgttt gcagagaaat       780
     tttccagaat gttcatcaat gaaacccttt caccgcacga ggtcgcagcc gccactgaaa       840
     atgtgccacc ctgcggcaac gttctggacc gactcgtact cgacgaccaa cgaatcatga       900
     acgcagctgc caaattgaaa tcaacctcat cagtaggacc tgacggaatc ccctccagta       960
     tcctgaaaaa gtgcatccaa tgcctgctgt ccccactacg attactgttc cagcactctc      1020
     tcgacaaagg ggtttttccg gacctgtgga aaactgcttt catgtttcca gtctataaaa      1080
     agggaaacaa acgtgacatc gacaactacc gggggatctc ggcgctttgc gctgtctcca      1140
     aactgttcga gctcgctgtg ctcgacctgg tgttttttca ctgcaagcaa cagatctgcg      1200
     ctgagcaaca tggcttcatg ccgggacgtt cgactacatc gaacttgctg accttcacca      1260
     cctacctgac caaggggcta gctagtcgaa gccaaaccga cgtaatctat actgatctct      1320
     ccgcagcctt cgacaggctc aaccatgaca tcgcgatcgc taagctcaaa aaactagggt      1380
     ttagtggcag tttgctcggt tggtttcagt cctatctttc cagacgaaca atcagtgtga      1440
     agatcggtga atgcgtctcg ctgctattcc tcgcctactc cggtgtagcg caaggaagtc      1500
     acttggggcc tcttatattc ttgctctact ttaacgacag caattttgta ctggatggac      1560
     caagactcgc ttatgccgac gacttgaaga tcttccggta cgtgaactca acggatgacg      1620
     ctgaactact tcaacagcag ctggatcaat tcgccgactg gtgtgccaca aaccgcatga      1680
     ccttaaatcc tcagaagtgt tccgttatat cgttcaccag gaagctcagg ccgatcacgc      1740
     acaactacac gctcctcgga acaaccgtcc cgcgggtcga atgcataaac gatctcggag      1800
     tgctgctaga cgcgaagctc acgtacaaga atcacgtcgc atacatcgtt gcaaaagcct      1860
     caagactgct tggtttcata tttcgtgcga ccaaaaagtt taccgacgtc tactgcctga      1920
     agtcattgta ctgcggcctt gttcggtcaa ccctggaata cagttccgtg gtgtggaatc      1980
     cctggtacca gaatagctcg gagaggatcg agagcgtgca gcgacgattc attcgtttcg      2040
     cactccgctt gcttccatgg agtgaccccc accgtctccc aagctacgaa agcagatgtc      2100
     agctaatcca tctggactct ttggctgttc gtcgcaacgc cgcacgtgta accgctgttg      2160
     ccgacctgct cacatcaagg attgattgcc cctccctact cggtgagctg aatctgcaag      2220
     ctagatctcg tgtgctgcgc ggaggtgcct tcttccgaat cccactwgaa gctgccaact      2280
     acagtgcaca cggctccatc atcggacttc aacggacctt caatcgagta gcctcaattt      2340
     tcgattttaa tgtgtcacgt gatgttttga aaaagcaatt tttagagttt tttagatgta      2400
     attaaagtat tattgtgtaa cat                                              2423
//
ID   CR1-11_DTa  repbase;    DNA;    INV; 4424 BP.
XX
AC   .
XX
DT   05-DEC-2012 (Rel. 19.10, Created)
DT   05-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4424
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2822-2822 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1469..1867,1780..4344)
FT                 /product="CR1-11_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="RLDPGTQYYRFKKLSCFFTVIYQNVRSLLGKLNQIHT
FT                 NSASFDFDAIAFTETWLNSSVSDHEIFVHKFSTYRTDRSSFAGGVLIAVNN
FT                 NFSSELFPVANETGIEFVAVKVCIGSAFIFLTCSYIPPTSDSQYIIRCCKS
FT                 LHWLGFYLFDLLIYSPNVRFPVYLNHLSAIQFVMSAVGHADQIIVMGDFNL
FT                 PHISWIPCDDSNLLLPNICHDFIDGLTDLPLAQINSVKNNRNRLLDLMFVG
FT                 DAALATVSRVNPISLPEDPYHPTLSISVELLNQSYKSTALTPCPIKCFRKT
FT                 DYTGLNKYLSRIDWSFLLEIQDMDSAVLQFYNSIYPALEAFVPTLDISPSS
FT                 KPPWFSKHLSYLKNKKSRLYKKYQKSGSLLDFARYSTIRSQFLTENSQSYN
FT                 LYLSQCKDNFRTNPKQFFSFVNSKRKSNAFPPSLRYLNKTENSAPEISNLF
FT                 ASFFQSTYSSKPYNTSTPYPYFIPHANNIFLPPFTESVVLEGMSSIDISYS
FT                 AGPDKVPSCILKHCAQNLLYPITLLFNLSVSLPCLPRIWNESYIIPLHKKG
FT                 SRVDIENYRGIAKLSAIPKLLEHLITLQLQHLCSSLISPSQHGFIRHRSTT
FT                 TNLLEFSHLINQGFQHRLQTDVIFTDFSKAFDSVNHSLLLLKLSYLGFPNN
FT                 LLKWIESYLTNRTQRVLFMNELSHTVDVTSGVPQGSHLGPLLFILFINDLP
FT                 QVISYSSIFMYADDVKICFSYSDWYLHSHLQFDLNEFHKWCVSNLLFLNHA
FT                 KCKLMTFYRSSPHLVSYSLGNHNLDRITTSNDLGVLFDHKLCFNSHITATV
FT                 NKAKGVLAFIKRWSKEFDDPYTTKTLYVALVRPILEYCSCVWSPQYKEPQN
FT                 IIESVQKQFLIFALRNLGWDSGRLLPSYRARLKLIDLPSLQHRRICNAIMF
FT                 VHKLLLGLVDSESLLSYIQLNVPSRFTRSFRPLRLPLCRSNYAQHEPFRAL
FT                 CNNYNSLYNILSFELPISTLPSNILSHLESLEL"
FT   CDS           join(132..521,301..891,810..1508)
FT                 /product="CR1-11_DTa_1p"
FT                 /translation="KANFVKTVTLLLNFNKLKQVLQXXVNPKSVVVVWLYR
FT                 LTRNALVYGSLSVAAFRYIASISRVRNRAQNIACISRSPAVSSLRPSSLDK
FT                 PPLDLSLYCSLIRSRRFFSYQFSTTLQLHKNVFDLLRQEMRILAFLEYETA
FT                 LRTSPAYHALPLSPLCAPLRWINRRWTYRSTALLSDLAAFSLINFQLLFNY
FT                 TKMSLICCAKKCEFSGTISGDNYLMCWLCDNCSHVKCGGGGHNGRIGDIVG
FT                 KHRQFYWTCTSCLSITMEMRTFMRQTRSGFQKVRTQLNVLSDIFGSVESSF
FT                 LGLKLLSESPRGIPIFNPMLNLLPIMHCSPYLVRRISQRNPNIQPNAELIA
FT                 DNALLSVPRSPLNISATSITINTPVPALPNASNNDDPATATTANVPDSADA
FT                 DRTPLDSTSLHTEVTDVGPGTSTSAPRPLMEFSPCRPSGSAGNTSATANVP
FT                 NPDELPLTSVPRPSELPLRSVKLRKAIFVSRLSPDTTPGAVKNHLCSKLKA
FT                 TPDNFIINKFNFNHTRKISSFKIFLPDSLLSEALNPALWPSDTIVHEFLPK
FT                 DSTQAPNITGSKN"
XX
SQ   Sequence 4424 BP; 1177 A; 1149 C; 693 G; 1401 T; 4 other;
     aacaaacttc gctgaagacg gtcgtgcttt tcaatcgctc ccgaaaacgt ttagcctatc        60
     gttgaattaa gtctatcttc ataacccaac ttggaatatc ttatcacttt cgatacgccg       120
     cttcactgtg aaaagccaac tttgtaaaga cagtgacttt attgttaaat tttaacaaat       180
     taaaacaagt gcttcaacmw kttgtcaatc ctaaaagtgt tgttgttgtt tggctttatc       240
     gtctcacccg caacgctctc gtttacggtt cgctcagcgt tgcagctttc cgttacatag       300
     ctagcatttc tcgagtacga aaccgcgctc agaacatcgc ctgcatatca cgctctcccg       360
     ctgtctcctc tctgcgcccc tcttcgttgg ataaaccgcc gctggactta tcgctctact       420
     gctctcttat ccgatctcgc cgctttttct cttatcaatt ttcaactact cttcaactac       480
     acaaaaatgt ctttgatttg ctgcgccaag aaatgcgaat ttagcggcac catctctggt       540
     gataactact tgatgtgctg gctgtgtgat aactgctcac atgttaaatg tggcggtggc       600
     ggtcataatg gtagaatcgg mgatattgtt gggaaacaca ggcaatttta ctggacttgt       660
     acttcgtgcc taagcattac catggaaatg agaactttca tgaggcaaac gagatctggg       720
     ttccaaaagg ttcggactca acttaatgtc ctctctgaca tatttggttc cgtcgaatct       780
     tcatttctgg gcctcaaact tctaagtgaa tctcccagag gaatcccaat attcaaccca       840
     atgctgaact tattgccgat aatgcactgc tctccgtacc tcgttcgccg ttgaacatct       900
     ctgctacatc gatcaccatc aatacacctg taccagcctt acccaatgcc tcaaacaatg       960
     atgacccagc tacagctact actgctaatg ttcctgattc cgctgacgcc gatcgcactc      1020
     cactggattc aacttcccta catactgaag ttacagatgt cggtcctggc acctcaactt      1080
     ccgcaccacg accgcttatg gaattctcac cttgccgacc gtccggatct gctggcaaca      1140
     ccagcgctac cgcaaatgtt cccaatcccg atgaactgcc gctaacatct gttcctcgcc      1200
     catctgaatt accattgcgc tcagtcaaac ttcggaaagc aatatttgtg tcccgcttgt      1260
     cacctgatac tacgccggga gccgtcaaaa atcatctgtg ctccaagtta aaagctactc      1320
     ctgataattt tataattaac aaatttaatt ttaatcacac gcgtaaaatt tcctcattta      1380
     aaattttcct tcccgacagt ctcctatcag aagctttgaa tcctgcatta tggcctagtg      1440
     acactattgt tcatgaattt ctgcctaaag actcgaccca ggcacccaat attaccggtt      1500
     caaaaaacta agttgctttt ttaccgtcat ttatcaaaac gtacgcagtc ttttgggtaa      1560
     acttaaccaa attcacacta acagcgcgtc atttgacttt gatgccatcg cttttaccga      1620
     aacctggctt aactcttccg tttccgacca tgaaatcttt gttcataagt tctctactta      1680
     tagaacggat cgttcttcct ttgctggtgg tgtccttatc gcggtaaaca acaatttctc      1740
     ctctgagttg tttcctgttg ctaacgagac tggtattgaa ttcgttgctg taaaagtttg      1800
     cattggctcg gcttttatct ttttgacctg ctcatatatt cccccaacgt cagattccca      1860
     gtatatttaa accacctgtc tgccattcag tttgtgatgt ctgccgtggg tcatgcagac      1920
     caaataattg tgatgggtga ctttaacctc ccacatattt cctggattcc ctgtgatgac      1980
     tctaatcttt tgctacctaa catttgtcat gattttatcg atgggttaac tgacttgccc      2040
     ctagctcaaa tcaactcagt taaaaataat cggaatagac ttttggacct catgtttgta      2100
     ggtgacgccg ctcttgcaac agtttctaga gtcaatccaa tttcccttcc tgaagatcct      2160
     tatcacccca ctctatctat atctgttgag cttttaaacc aatcttacaa atcgactgca      2220
     ctaaccccct gtccgatcaa atgttttcgg aaaacagatt acactggcct caataagtac      2280
     ctttcgagga ttgactggtc atttctatta gaaatccaag atatggactc cgccgtccta      2340
     caattttaca actccattta tccggccttg gaagcttttg tccctacact ggatatatcc      2400
     ccttcttcca agcccccgtg gttttccaaa catctctcgt acctaaaaaa caaaaaatcc      2460
     aggctttata aaaaatatca aaaatccggc tctctacttg acttcgcccg ttactccacc      2520
     atccgctccc aattccttac tgaaaacagt caatcctata atctatacct atcacagtgt      2580
     aaagataact ttcgcactaa tccaaaacaa tttttctcct tcgttaactc caagcgaaaa      2640
     tctaatgctt ttcccccgtc acttcgctat ctcaataaaa cagaaaattc tgctcccgag      2700
     atttccaact tatttgcatc ttttttccag tcaacttatt cttctaaacc ctacaacacc      2760
     tcaacaccgt atccctattt cataccgcat gctaataaca tatttttacc ccctttcaca      2820
     gagagtgtcg ttctggaagg aatgtcctct attgacattt catactcagc tggccctgat      2880
     aaggtgccaa gctgcatttt aaaacactgt gcccaaaatc tgttatatcc aattacactt      2940
     ctttttaact tatcagtctc tttgccctgc ctacctagga tctggaatga gtcttacata      3000
     attcctcttc ataaaaaagg ttctcgagtg gacatcgaaa attaccgtgg cattgccaaa      3060
     ctatcagcta ttcctaaact tctggaacat cttatcactc ttcaattaca acatctctgc      3120
     agttccttaa tatctccttc tcagcatggg tttattaggc atcgatcaac gacgaccaat      3180
     ctccttgagt tctcgcactt gattaatcaa ggttttcagc accgtctaca aaccgacgtt      3240
     atattcactg attttagcaa ggctttcgac tcggtaaacc attcactgct tctgcttaaa      3300
     ctttcttatt tgggattccc aaataacctt ctaaaatgga tagagtcgta tttaacaaat      3360
     cgcacccaac gagtcctctt tatgaatgag ctatctcaca ctgtggatgt cacttctggt      3420
     gttcctcaag gcagccacct tggaccgtta cttttcatac tttttataaa cgacctacct      3480
     caagttatat catactcgtc tatttttatg tacgccgatg acgtcaaaat ttgtttctcc      3540
     tattccgatt ggtaccttca ttctcacctt caatttgacc tcaatgaatt tcataagtgg      3600
     tgcgtcagta atctcctttt cctaaaccat gcaaaatgca aacttatgac tttctaccgt      3660
     tcctccccgc atcttgtctc ctacagcctt ggcaatcaca acctagaccg cattaccacc      3720
     tcaaatgacc ttggagtcct tttcgaccat aaactatgct tcaatagcca tattactgca      3780
     acggtaaaca aagccaaggg tgtgttagct ttcataaagc gatggtccaa agaatttgac      3840
     gacccgtaca ctaccaaaac actgtatgta gctttagtac gtccgattct ggaatactgt      3900
     tcctgtgtgt ggagcccgca atataaggag cctcagaaca ttatcgaatc ggtacaaaag      3960
     cagtttctga tctttgcact gcgtaatctt ggatgggatt ctggcagact acttccatct      4020
     tatcgagcca gacttaaatt aatcgacttg ccgtctttac aacaccgtag aatttgcaat      4080
     gccataatgt ttgtccataa gcttcttttg ggtctcgttg attctgaatc actcctttcc      4140
     tatatacaat taaacgtccc atccagattt actcgttcat tccgtccttt gcgcttgcct      4200
     ttgtgtaggt ctaattatgc ccaacatgaa ccttttcgcg cactatgtaa caactacaat      4260
     agcctataca acattttatc ttttgaatta cctatcagca ctcttccgtc taatatttta      4320
     agtcacctcg aatcgttaga attgtaataa gttagtgtat ccctagtcaa gcatatgtta      4380
     gcagataatt gttaaccaac taaataaata aataataaaa aaat                       4424
//
ID   CR1-120_AAe repbase;    DNA;    INV; 4568 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-120_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4568
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1208-1208 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..1497
FT                 /product="CR1-120_AAe_1p"
FT                 /translation="MPCASNNCTVSDDKHVWYCHGSCGKKFHAACVGAQRN
FT                 HEQSILSYMLPLCYDCQKRFVLEANFEKFFNQQQETNKLNNLLMESNYKIS
FT                 SNLNKFDISEGFESIEMLLNDLKSDFKAIAAKHNTTAEEIAKSSAQVNELA
FT                 LRCKNGKQDDVAIKNHLTSLFDISMQATKNSIIEYVDVLTSDLTRELKNIC
FT                 TEFEKVSSLIIDMASHCSEHNASHANSSSADIIDELKQISNAVNSLEKKST
FT                 SSPPLESHPNLGTEMMSAQAENNSGWRLLGTQKVWKASWAEYDARQLRRLN
FT                 QQKNADKARKRRKRNAVRMSNTNSYNSVRNNNNNNNGNNNDDRSRNKYKGI
FT                 LNNNKTVFNKTNIGSKPTCSYYNYNNNNKCNSQQAATSSLPPDKDLLAAAK
FT                 VKFSGHSTANQRGIKFQRGETLNPYPVDHQFPQTSSSSSPNWTLGPALRNS
FT                 FSQHCSSCSCERSCFRPT"
FT   CDS           1476..4496
FT                 /product="CR1-120_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TFVFSSDLTHSTEADHDEAGNVSIDIENSFKNDELPS
FT                 ISSENRSTEILVYCQNFNRMKSASKMSIISKNILSSSFSVILGTETSWNDS
FT                 IKNEEIFGSNYNVFRNDRDLVLTQRKSGGGVLVAISSKFNSELIASPKFKD
FT                 FEHVWVKTEIIGETHIFASVYFPPDRATKSTYEVFFKAAEEIVSYFPPEYK
FT                 IHIYGDFNQRNVDFIPDYDNESILLPVVGENETLQFIFEKIAFLGLNQINH
FT                 VKNQQNCFLDLLLTNICEDFCVVESVSPLWKNEAFHTAIEYSIFVHSNLNP
FT                 NDCSYEYVFDYNMANYDNIRYKINRVNWQSNLKEEVNIESAVQNFYKILSE
FT                 VIQEEVPLKRKRRGFGSKNPVWFNKQIINLKNRKQKAHKTYKAHNSQANLE
FT                 KYLSICDQLNLTISNALTDYNIKTENEVKSCPKNFFNYVKSKINSNNFPSK
FT                 MTLDDKEGNNSEDICNLFATFFQETYTNFSDNDRDFGYFSYLPEISRDVGV
FT                 NQIHVQDITTGLNDLDATKGSGPDGIPPVFIKKLAVELTTPLFWLFNMSLE
FT                 SGEFPKEWKKSFLVPIYKSGKKSDIRNYRGIAIISCIPKLFESIINKCIFG
FT                 QIKHRITNSQHGFFKGRSTTTNLLEFVDYSIMAMDKGNHVEALYTDFSKAF
FT                 DRLDISMLIFKLSKIGIEKKLLKWIESYLTDRQQIVRFNDKKSKPIQVTSG
FT                 VPQGSHLGPLLFILYVNDVSFLLKKIRILIYADDMKLFLEIMKDDDYETFH
FT                 NEILLFNTWCFKSLLKLNVEKCNLITYSRKRNTPNLTIRLGNQQVKKCDKI
FT                 RDLGVILDSKLTFVEHYNTITHKAGNMLNFIKRFGYHFQDPYTIKTLYVAY
FT                 VRSILEYCSVVWSPYLKSHEERIESIQKQFLLYALRKLGWTVFPLPSYKAR
FT                 CMLINIQTLKQRREYAMVAFVNDIVSQRIDSTKLLSKLNFYAPNRQLRHRN
FT                 LFTLDRYRTNYAKFSPLNQMMSVYNEHCEMIDLSMPRTKLKSYFNSLGNLR
FT                 I"
XX
SQ   Sequence 4568 BP; 1616 A; 838 C; 795 G; 1319 T; 0 other;
     agtctttgta caggtcggac gtatttcata tttgctccgc ttcaaataaa tcgcgcgcgt        60
     ttgttttttt tattttgttc ttttgtctaa ctgctgcgta agtgaatcat gccgtgcgcg       120
     agtaataatt gtaccgtcag tgacgataaa catgtgtggt attgccatgg gtcgtgcgga       180
     aaaaaattcc atgctgcgtg cgtcggcgct caaaggaacc atgagcagag tatcctgtca       240
     tatatgcttc cgctctgtta tgactgtcag aagcgatttg tactagaagc gaactttgag       300
     aagtttttca atcagcaaca agagaccaac aaactcaata atttattgat ggagtcgaat       360
     tacaaaattt catccaattt aaataaattc gatattagcg aagggtttga gagcatcgaa       420
     atgctattga acgacctgaa aagtgatttc aaagccatcg cagcaaaaca taacactaca       480
     gctgaagaaa ttgcgaaaag ctctgctcaa gtgaatgaat tggcattgcg ttgcaaaaat       540
     ggaaaacaag acgacgttgc cataaaaaac cacttgacat cactgttcga catatcaatg       600
     caggccacca agaacagcat aatagaatat gttgatgtac tcacttccga tttgacacgg       660
     gagcttaaga atatttgcac tgaatttgaa aaagtcagta gtttgattat tgatatggct       720
     agccattgtt cagaacataa tgcgagccat gcaaattcat catcggcaga tatcatagat       780
     gaattgaagc aaatttcaaa cgccgtaaat tctcttgaaa aaaagagtac atcttcaccc       840
     ccattggaat cacacccaaa tttggggaca gagatgatgt ccgcgcaagc tgaaaacaat       900
     tctggctggc gactgcttgg aacgcaaaaa gtttggaagg ctagttgggc agaatacgat       960
     gcacgccaac ttcgccgctt gaatcaacaa aaaaacgcag ataaggcaag gaaacgtcgc      1020
     aagcgaaacg cagtgcgaat gtcaaatacc aattcataca actcagtccg caacaacaac      1080
     aacaacaaca acggaaacaa caatgacgac agatcccgga acaaatataa agggatactc      1140
     aacaacaata aaacggtctt caataaaacc aacataggca gcaaacccac atgtagctat      1200
     tacaactaca acaataacaa caaatgcaat agtcaacaag cagcaacaag ctctcttcct      1260
     ccggataagg atcttttggc agcagcgaag gtgaaattct ctggtcactc tactgcaaat      1320
     caacgaggta tcaagtttca acgaggagaa acactaaacc cgtacccggt ggatcaccag      1380
     tttcctcaaa caagctcctc ttcttcccca aattggactc tcgggcccgc tctgagaaac      1440
     tctttttctc agcattgttc gtcgtgttcc tgtgaacgtt cgtgttttcg tccgacctga      1500
     cgcactctac agaggcagac catgacgaag ctggtaacgt ttcaatagat atagaaaata      1560
     gttttaagaa tgacgaacta ccatcaattt cttcagaaaa tcgttctact gaaattctgg      1620
     tatattgcca gaatttcaat cgcatgaaga gcgcatcaaa aatgagtata attagtaaaa      1680
     atatattaag ctcctcgttt tcagttattt tgggcactga aacaagttgg aacgatagca      1740
     ttaaaaacga agaaattttt ggtagcaact ataatgtatt taggaatgat cgggatttag      1800
     ttttaaccca aaggaagtca ggtggtggag ttctagttgc aatttcttca aaattcaatt      1860
     ctgagcttat tgcttcacca aaatttaagg attttgagca cgtttgggta aaaacagaga      1920
     tcattggaga gactcatata ttcgcgtcag tttactttcc tcctgatcga gctactaagt      1980
     cgacgtatga agtgttcttt aaagcagccg aagaaatcgt ttcatacttt cctcctgaat      2040
     ataaaattca tatttatggt gatttcaatc aacgaaatgt agattttatt ccagattatg      2100
     ataatgagag cattcttctt ccagttgttg gtgaaaatga aacattacaa tttatatttg      2160
     agaaaattgc attcctagga ctcaaccaaa ttaatcatgt caaaaaccaa cagaattgtt      2220
     tcttagattt acttctaacg aatatatgtg aggatttttg tgttgtggaa tctgtttctc      2280
     cgttatggaa aaatgaagcg ttccacacag cgatcgaata ttccatattt gtacacagta      2340
     accttaatcc caacgactgt agttatgagt atgtttttga ttacaatatg gctaattatg      2400
     acaatataag gtacaaaata aatagagtaa actggcaatc caatctgaaa gaagaagtaa      2460
     atattgaaag tgccgtacaa aacttctaca aaatattgtc ggaggtaatt caggaggaag      2520
     ttccactcaa acgtaaaaga cgaggttttg gctcaaaaaa tccagtctgg ttcaataagc      2580
     aaatcattaa tttgaaaaat cgcaaacaaa aagcacacaa aacctacaag gcacataata      2640
     gtcaagcaaa tttagaaaag tatctgagta tttgtgatca actaaattta actatttcta      2700
     atgcacttac agattataac ataaaaaccg aaaatgaagt caagtcatgt ccaaagaatt      2760
     tcttcaacta tgtcaaatca aagattaatt caaacaattt cccatcaaaa atgacattag      2820
     acgacaaaga aggaaataac tcagaagata tttgtaacct ttttgcaact ttttttcaag      2880
     aaacttacac gaacttctct gataatgatc gtgattttgg atatttttca taccttccag      2940
     agatttcaag ggatgttgga gtaaatcaaa ttcatgttca agacattacg acaggtctga      3000
     atgatttaga tgctactaaa ggatcagggc cagatggaat cccaccagta tttataaaaa      3060
     aattagcggt agaacttaca actccactat tctggctttt caatatgtca cttgaatctg      3120
     gtgaatttcc aaaggaatgg aaaaagtctt tcttggtacc tatttacaaa tcaggcaaaa      3180
     aatctgatat caggaactat cgtgggattg ccatcatttc atgcattcca aaactgttcg      3240
     aatcaattat taacaaatgt atttttggtc aaattaaaca cagaataact aattcacaac      3300
     atggcttctt taaaggccgt tcaactacta caaacctcct ggagtttgtt gattattcca      3360
     taatggcaat ggataaaggt aaccacgtag aggctctcta cactgatttt agtaaagcat      3420
     ttgatagact tgacatttca atgttaattt tcaaactgag taaaataggt atcgagaaaa      3480
     agcttctcaa atggattgaa tcatatctaa ctgaccggca gcaaatagta agatttaatg      3540
     acaaaaaatc caaaccaatt caagtcacat caggtgttcc tcaaggctcc cacttaggac      3600
     ctctcctttt tattttatat gttaacgacg tatcttttct tcttaaaaaa atacggattc      3660
     ttatatatgc agatgacatg aaattgtttt tagaaatcat gaaagacgac gattatgaaa      3720
     cattccataa tgaaatactt ttatttaata cctggtgttt taaaagttta ttgaagttga      3780
     atgttgaaaa atgtaatcta ataacttata gcagaaaacg aaacactccg aatttaacaa      3840
     taaggttagg aaaccaacaa gttaaaaaat gtgataaaat tagagatcta ggagtaattt      3900
     tggattccaa attaacgttc gttgaacatt acaacacaat aactcataaa gcgggcaata      3960
     tgcttaactt cataaaacgt ttcggatatc attttcaaga cccttatacg atcaaaaccc      4020
     tttacgttgc ttatgtgaga tccatattag agtattgtag tgttgtctgg tccccatatt      4080
     tgaaatcaca tgaagaacga atagagtcga ttcaaaagca gtttttacta tacgcactcc      4140
     gcaaattagg atggactgta tttcctcttc cgtcatataa agcacgatgc atgttgataa      4200
     acattcagac attaaaacag cgacgagaat atgccatggt cgcatttgtt aacgatatcg      4260
     tttcacaacg tattgactca acaaagctat tatctaaatt aaacttttat gctcctaatc      4320
     gacaattgcg tcacagaaat ttgtttactt tagatcgtta tcgtacaaac tacgccaaat      4380
     ttagtcctct aaatcaaatg atgtctgttt acaatgagca ctgtgaaatg attgatctta      4440
     gtatgccccg gaccaaattg aaatcatatt ttaactcact aggaaatctt agaatataag      4500
     aaactatgta actatgtagt ctacaaatga ttgacgaaat aaataaataa ataaataaaa      4560
     gaaataaa                                                               4568
//
ID   CR1-121_AAe repbase;    DNA;    INV; 2415 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-121_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2415
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1209-1209 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 19 sequences with >96%
CC   identity. This consensus is 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2300
FT                 /product="CR1-121_AAe_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="VNDVVNENGRCLDLCFVSTQDVAPSIAIAPSALVKNV
FT                 SHHPPLVLLLADSEPCEPLTISPVSYDFNRANQQGIVEFLASVNWLEVLDT
FT                 NDVENAALTFTHILGHVIERHVPKKVHGTAGPPWQTQELRRLKTSKRAALR
FT                 LYSKRGTQSHRNHYVSVNNKYKSTSRRCFRRYQQHIQQNLKTKPKSFWRYV
FT                 NQQRKESGLPSTVKLDDEVASDRNQACRLFAKKFSSVFCDEMLSEEYVALA
FT                 ASNVPLVMETLNAFSVDDGMIARAATQLKSSINPGPDGIPSSFVKSYIEQL
FT                 LLPIRHVFALSLTSGTFPSVWKNAIIFPVHKKGDRKDVSNYRGISSLCAIS
FT                 KLFELVVMEPLIAHCKQFISNEQHGFIPGRSTTTNLLSLTSHVSDSFTERV
FT                 QTDVIYTDLTAAFDKINHLITIAKLERLGISGLMLRWFKSYLTERQLTVGL
FT                 EGHFSETFTATSGIPQGSHLGPVIFLLYFNDVNYVIKGPRLSYADDLKMYL
FT                 RVRSICDAITLQNDLDAFAGWCSLNRMVVNPEKCNVISFSRRKEPVYFNYQ
FT                 LFGKILQRVDHVKDLGVILDAQLTFKHHMSYVIAKASRTLGFIFRIAKEFT
FT                 DVYCLKSLYCSLVRATLEYCSTVWHPHYQNGVQRIESVQRRFIRFALRRLP
FT                 WRDPHRLPSYHSRCQLIHLETLQSRRDINRAMIVADLLQGRIDCPAILGQV
FT                 DISARHRNLRANSMLRPPLRRTNFGQNVAINGLQRVFNRVAPAFDFHLPRH
FT                 TVRRNFAEILTRRIV"
XX
SQ   Sequence 2415 BP; 673 A; 532 C; 505 G; 705 T; 0 other;
     aagtcaatga cgtagtgaat gaaaacggac gatgtttaga tctctgcttt gttagcacac        60
     aggatgttgc accttcaata gcaatcgccc catcagcttt ggttaagaac gtttcacatc       120
     acccgccgtt ggttctcctg ctcgccgata gtgaaccatg tgaaccgcta accatatctc       180
     cggtttcata cgatttcaat agagcaaatc aacagggaat agttgaattt ttagcctctg       240
     taaactggct tgaggttctt gatacgaatg acgttgaaaa tgctgcccta acttttacgc       300
     atatcttagg gcatgtaatt gaaagacatg tacccaaaaa agtccatggg accgctggtc       360
     caccttggca aactcaagag ctccgtcgcc tcaagacttc caagagagca gccctcaggc       420
     tatactccaa gcgtggaacg cagtctcacc gtaatcacta tgtgagtgtt aacaacaaat       480
     ataaaagcac tagccggcgt tgtttcagac gatatcagca gcacattcag caaaatctca       540
     aaaccaaacc taaatcattt tggcggtacg tgaaccaaca acgaaaggaa tccggattgc       600
     cttctactgt gaaactagac gatgaagtgg cctctgatag aaatcaagct tgtcggcttt       660
     ttgccaaaaa attttctagc gttttttgtg acgagatgtt atcagaggag tatgtagcac       720
     ttgctgctag taacgttccg ttggtcatgg agacattgaa cgcatttagt gtcgatgatg       780
     gtatgattgc tagagctgcc acccaattga aatcttcgat caatcccggc cccgatggaa       840
     ttccttcttc cttcgtgaaa tcgtatatcg agcagttgct cttacctatc cgtcatgtgt       900
     ttgctttgtc cctaacgagt ggaacgttcc catcggtttg gaagaatgct atcatttttc       960
     cagttcacaa aaaaggcgac cgcaaggatg ttagtaatta tcgtgggatc tcgtcacttt      1020
     gtgctatttc aaaactcttt gagttagtag taatggaacc gctaatagct cactgtaagc      1080
     agttcataag taatgagcaa catggtttca ttcctgggag atctactacc accaatctct      1140
     tgagtcttac atcccacgtt tccgatagct tcactgaacg tgttcaaaca gatgttattt      1200
     atacggatct gactgctgca tttgacaaga tcaaccattt gataacgatc gcaaaactgg      1260
     aaaggctcgg aatttccgga ctaatgctac gttggtttaa gtcctacctt acagagagac      1320
     agctgacggt cggactggaa ggacattttt cagaaacatt cacggctact tctggaatac      1380
     ctcaaggaag tcatttgggt cctgtgatct ttttattgta ctttaacgat gtgaactacg      1440
     taattaaagg gccacgatta agctatgccg acgatttaaa aatgtatctc cgtgtccgtt      1500
     ccatctgtga tgctataact ctacagaacg atttggatgc ttttgcagga tggtgtagtt      1560
     tgaatcgcat ggtggtgaat cctgaaaagt gtaatgttat atcgttctca cggagaaaag      1620
     agcctgtcta tttcaactac cagttattcg gaaaaatact tcaacgagtt gatcatgtga      1680
     aggatttagg tgtcattctg gatgcccaac taacgttcaa gcaccatatg tcctacgtca      1740
     tcgcgaaagc ttccaggact ttaggattta tcttccgtat tgctaaggaa ttcaccgacg      1800
     tatactgcct caagtcactc tactgttcgc ttgtacgtgc gactttggaa tattgttcga      1860
     cggtttggca cccacactat cagaacggcg ttcaaaggat tgaatcggtt caacgtcgtt      1920
     ttattcgttt cgcactccgc cgacttcctt ggcgcgatcc acaccgatta cctagctatc      1980
     atagtagatg ccaattgatc catcttgaga cgttacagtc acgccgggac ataaacagag      2040
     cgatgatagt tgctgacctg ttgcaaggga gaatcgactg ccccgctatt cttggacagg      2100
     tagatataag tgctcgccac cggaatttgc gagctaattc tatgttacga ccacctctac      2160
     gacgaactaa ttttggacaa aatgtagcta taaatgggct gcaacgcgta ttcaacagag      2220
     tagcaccagc gttcgacttt catcttccaa gacatacagt ccgccgtaat tttgccgaaa      2280
     tacttactcg aagaattgtt tgatttttat tgtgtacttg tttttatata tcttgaccta      2340
     ttttgtcgta aatttaagta accacacatc attgggacta attgtctgtt ggtgtaaaca      2400
     aataaacaaa aaaaa                                                       2415
//
ID   CR1-122_AAe repbase;    DNA;    INV; 4736 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-122_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4736
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1210-1210 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1224
FT                 /product="CR1-122_AAe_1p"
FT                 /translation="MPMVCTSCSDEIKADHIKITCQGFCKAAFHGNCSGLS
FT                 VHAIDEAAKHSQLFYLCNPCTKLMSDLHLRSTIRSAYEAGQEKVLSAHNEI
FT                 VENLKQEIMTELKKEIRTSFATLANSSSRTPISSKRIASNAIPSRRLFSKS
FT                 QTHVFQKQPMDCGTAESISPSLGIGVVSMPASQPKFWLYLSRISREVTTEQ
FT                 VCEMAKKRLGSEDITTIRLVATGRDINTLSFISFKIGIDCNLKAKALCSST
FT                 WPKGILFREFKDNKSNANFWKPQQTPNVSPTATTSSSTSSSVEAMAE"
FT   CDS           1110..4631
FT                 /product="CR1-122_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="VQGQQIKRKFLETPANTERLTYGDNVQLNILICGGDG
FT                 RIDAVSPRRTALSSLETSSQFDTVPPFAASAHLSRRGPDVKSVEEVLQPAI
FT                 SGKYFHQLELSASDITPAFCQKPSGSVCLTDFVSSSSRDQTSPKLGCTLYG
FT                 TMEAPKPPSSVEPVEKFNLHQHSCLQSHPGPESRVGNGVFQTAPIGKYPTL
FT                 NNCASPHDILIRSPIPMILEPANSDVLMYYQNVGGMNSTLVDYKLACSDQC
FT                 YDIYAFTETWLNENTPSNLLFDDTYSVYRQDRSPSNSNKRSGGGVLLAIRS
FT                 CFKSRQMFIPEINVIEQLWVSVSLSEAKTFICVVYFPPDRVNDVNLIEKHV
FT                 ESINWIIGQMSPNDNIIIVGDFNLRFVNWNWNAQGFYYPDVAHSSGTVSSG
FT                 CLLDGYSTACLRQLNGVKNDNGRTLDLCFVSDEMCAHCNITRAPSMLVKVC
FT                 RHHPPLQLSIKTNTKFAFEDAEVSTLFYDFGSADFDSMNSFLMNVHWAEVL
FT                 RDCDADRSASILSNILLYAIDQYVPKKLNRVIAHPAWSNSHLKRLKREKRK
FT                 ALRKFSKHKTPSSRARYLRANQHYKRLNGKLFLAHQERLQRRLKSNPKSFW
FT                 RYVSDQRKETGLPRSMTNGMLEASSTEEIAELFLVQFSNVFSNPSTSSRDI
FT                 MDAAASVPVYSAVGPHHLITDEMVLSAAKRLKKSTGCGPDGIPSVVLKQCI
FT                 NAISSPLTLIFNSSLETGLFPSCWKESFVFPVHKKGCKRNVSNYRGIASLC
FT                 ATSKLFELIVLDFLSSKCSHYISSDQHGFVAKRSTNTNLVTYTSFITRQME
FT                 NGLQVDAIYTDLSAAFDKMDHEIALAKFDRLGISGSLLTWLRSYLTGRTMC
FT                 VKIGDHRSASFRVTSGVPQGSHLGPFLFLLYMNDINFILKCQKKSYADDLK
FT                 LYCVIXKPSDALFLQQQLEVFANWCEKNRMVLNASKCSVISFGRKRSMYLH
FT                 EYTLXGAAVKRENAVKDLGVILDSKLTYKEHVSYIVSKASSQLGFLFRFGK
FT                 HFQDIYCLKALYCALVRSTLEYSAVVWAPFYQNGMRRIEGVQRKFVRYALR
FT                 NLPWNDRNNLPSYVDRCKLIHLDLLSVRRDVAKACFVSDLLNSNVDCPELL
FT                 SQLNVNIRRRALRSNDFLQIDRSRTNYGMNDPVKSMCRVFVACFESFEFGL
FT                 SRNRLRQNFLSVLSV"
XX
SQ   Sequence 4736 BP; 1308 A; 1083 C; 964 G; 1377 T; 4 other;
     tttggcaaca ctgttgttgt tatttagctg taatttttgt cactcctaaa ttactgtttt        60
     tatccgtgta tccgtgacaa ttattcgttg tattaattgt tatctgtgta ttgacactcg       120
     tattgctcag tgcaactgaa attcaataac attagactct acaacttgtt caattcgtgc       180
     atttatttct tgttgagttg tgataaaatt tgtttcgtcg catcatcaac cgcatttgcg       240
     tacaagaacc agtccagcac aacaatatct tccctgcaag ttttggacct cgacgctgca       300
     tacctgcagg cgcttcatct ttcctggatc acatcgtgtt gatacttcgt cacaagcaaa       360
     atgcctatgg tctgcactag ttgctccgat gaaatcaaag ctgatcatat taagatcact       420
     tgccaaggat tttgtaaggc agcgttccat ggaaactgta gtggtctatc tgtacatgct       480
     attgatgaag ctgccaaaca cagccaacta ttctatctct gcaacccttg taccaaattg       540
     atgagtgatt tgcatcttcg tagcacgatt cgcagtgcgt acgaggccgg ccaagaaaag       600
     gtgttaagtg cacataatga gatcgtcgaa aatttgaagc aggaaattat gactgaactg       660
     aaaaaggaaa tacgtactag ttttgcgacw ctagctaatt cttcatctcg tacaccaata       720
     tcatcgaaaa ggattgcctc aaacgcaatt cctagtcgcc gcctatttag caaatctcaa       780
     acgcatgtat ttcagaaaca acctatggat tgcggaaccg ctgaatcaat atccccttca       840
     cttggaatag gtgttgtatc tatgcccgcg agtcaaccga aattctggct ttacctctca       900
     cgtatctctc gtgaagtaac gactgaacaa gtgtgcgaaa tggcaaaaaa acgtcttggg       960
     tctgaggaca tcacaactat tcggctagtt gccactggtc gtgacatcaa cacgctatca      1020
     ttcatctcgt tcaaaattgg tatcgactgc aacttgaagg ccaaggctct ctgctcttca      1080
     acatggccaa aaggcattct ttttcgtgag ttcaaggaca acaaatcaaa cgcaaatttt      1140
     tggaaacccc agcaaacacc gaacgtctca cctacggcga caacgtccag ctcaacatcc      1200
     tcatctgtgg aggcgatggc agaatagatg cagtatcacc acgacgcacc gcactaagca      1260
     gtttggagac ctcttcacaa tttgacacag tcccgccttt tgctgccagc gctcatctta      1320
     gtcgtcgtgg tcctgatgtc aaatctgtcg aagaggttct ccagcctgcc atttcaggca      1380
     agtattttca tcaattagaa ctctcagctt ctgatattac tcccgctttc tgtcagaaac      1440
     catctggatc tgtatgcctc accgattttg tttcatcgag tagcagagac caaacttcgc      1500
     cgaagctggg atgcacgtta tatggtacta tggaagcccc taagccccct agttcagtcg      1560
     agcccgtaga aaaattcaac ctccatcagc attcctgcct tcaaagtcat cccggtcctg      1620
     aatctagggt cggcaatggg gtcttccaaa ccgctcccat cggcaagtac ccgacgctga      1680
     acaattgtgc ctctcctcat gacattctca ttcgcagccc tataccgatg attttggaac      1740
     ccgctaattc ggacgtattg atgtattatc aaaatgtcgg tggcatgaat agcactctgg      1800
     ttgactacaa actagcgtgt tccgatcaat gctacgacat ttacgctttt acggagacct      1860
     ggctaaacga aaatacgccc tccaacctat tgttcgacga cacttatagc gtgtaccggc      1920
     aagatcgttc tccgtccaac agcaataaac gatccggtgg cggagttctg ctagccatcc      1980
     gttcctgctt caagtcacgc cagatgttca ttccggaaat taatgtcatc gagcagctat      2040
     gggtctcagt gtcactctcc gaagcaaaaa ctttcatttg cgtcgtctat tttccacccg      2100
     atcgtgtcaa cgacgttaac ctcatagaaa aacatgtcga atcgatwaat tggatcatag      2160
     gtcagatgtc cccaaatgac aacatcatca ttgtcggcga tttcaatctt cgttttgtta      2220
     actggaattg gaatgcccaa ggattttatt atcccgatgt cgcccattct agtggaacgg      2280
     tttcgtctgg atgcctgctg gatggctaca gtactgcttg tctcagacaa ctgaatggtg      2340
     ttaaaaacga caacggacgc acgttggatt tatgcttcgt tagcgatgaa atgtgcgctc      2400
     attgcaatat cacacgagct ccatctatgt tggttaaggt gtgtaggcat caccctcctc      2460
     tacaactttc gataaagacc aatactaaat ttgccttcga ggatgcggaa gttagtactt      2520
     tattctatga tttcggtagt gccgattttg atagtatgaa ctcgtttcta atgaatgtac      2580
     attgggctga agtacttcgc gattgtgatg ccgatcgatc tgcttcaata cttagcaata      2640
     ttttactcta cgccattgac cagtatgtac caaaaaagct taaccgagta atagctcacc      2700
     ctgcctggtc gaactcgcac cttaaacgtc ttaaaaggga aaaacggaaa gctttgagaa      2760
     aattcagcaa acataaaact ccatcatcca gggcacggta tttacgagca aatcaacatt      2820
     ataagcgatt gaatgggaaa ctatttcttg ctcaccaaga acgcttacag agacgcttga      2880
     aatcaaaccc taaaagtttc tggcggtatg ttagcgatca acgcaaggag actggactcc      2940
     cccgttcaat gaccaacgga atgttggaag cctcttccac tgaagaaatt gccgaactct      3000
     tccttgtgca attcagcaac gttttttcca atccatcgac tagtagccga gacataatgg      3060
     atgcagctgc tagcgtacca gtttattcgg ctgtaggacc tcatcacttg ataactgatg      3120
     agatggtttt gtctgctgcg aagcgcttaa aaaaatcaac cggctgtggc cccgacggta      3180
     ttccatctgt cgtcctcaaa caatgtatta atgcaatatc ttctcctttg acgttgattt      3240
     tcaactcatc gctggaaact ggattgttcc ccagctgttg gaaagaatca ttcgtttttc      3300
     cagttcataa aaaaggttgt aagcgcaatg tgtcaaacta tcgtggaatt gcctccttat      3360
     gtgctacttc taaactattc gaactgatag tcttggactt cttatcatca aaatgctcgc      3420
     attacatttc atcagatcag cacgggtttg tggctaaacg ctcgacaaat actaatcttg      3480
     tcacttacac atctttcatc acacggcaaa tggaaaacgg cttacaagtt gatgcaatat      3540
     acacggatct gtcagcagct ttcgacaaaa tggaccacga aatcgcctta gccaagtttg      3600
     atagactggg aataagtggt agtctgctca cctggttgcg atcgtatcta acaggacgca      3660
     ctatgtgcgt aaagattgga gatcatcgtt ccgcatcgtt tcgtgttaca tccggagtac      3720
     cgcaaggcag tcatcttggg ccgtttctct tcctgctcta tatgaacgac attaatttca      3780
     ttttaaagtg tcaaaaaaaa tcttacgcag atgacctcaa actgtactgc gtaattwcaa      3840
     aaccaagtga cgccctattt ctgcaacagc aactagaagt gtttgcaaac tggtgcgaaa      3900
     aaaacagaat ggttctcaat gcttccaaat gctctgttat ttcgtttggc cgtaaacgtt      3960
     caatgtatct ccacgaatat actttgkccg gtgcagctgt aaagcgtgaa aatgctgtga      4020
     aggatctcgg agtaatcttg gactccaagc tgacgtataa agagcatgta tcctacatcg      4080
     tatcgaaggc gtcatctcaa ctaggctttc tatttcgttt tggcaaacac ttccaggaca      4140
     tttattgttt gaaagccttg tattgtgcct tggtgcgttc tacgttggag tactcggccg      4200
     tagtgtgggc accgttctac caaaacggta tgcgcagaat agagggtgtg cagcggaaat      4260
     ttgtacgtta cgcgcttcgt aatttaccgt ggaacgatcg taataatcta cccagctacg      4320
     ttgaccgctg taaattgata caccttgacc tcttgagtgt tagacgtgac gtagctaaag      4380
     cctgcttcgt cagtgacctc cttaattcga acgttgattg tccggagctt ctgagtcaac      4440
     tgaacgtgaa tattagaaga cgagcactac gttcgaatga ttttctgcaa atcgacagat      4500
     cgaggacaaa ctacggcatg aatgatcctg tgaaaagtat gtgtcgtgtt ttcgttgcct      4560
     gtttcgagag ctttgaattt ggtttaagta gaaatagatt aagacaaaat tttttgagtg      4620
     tgctttctgt gtaatgttag atttttgtgt tttataatct aagttttgtc atttgggagt      4680
     ttataacctg ttgacgtaca aaaatataaa taaatataaa taaataaata taaaaa          4736
//
ID   CR1-123_AAe repbase;    DNA;    INV; 4682 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-123_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4682
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1211-1211 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..1181
FT                 /product="CR1-123_AAe_1p"
FT                 /translation="MVKHCTKCDXAIAGTDYVACRGYCGGFFHMNACSGVT
FT                 RALLSYFSSHRKNLFWMCDGCANLFENSHFRMISEQXEQHSPLGSLTAAIN
FT                 ELRTEIKQIRSKPIMQFSPASNTRWPAIEQQRAAKRPREMDSPVRAPXCCV
FT                 GSRKAQENDVTISVTPNVVDEKFWLYLSRIRPDVTVESMTALVKDSLQIDV
FT                 DPPVVKLVPKGKELGSLSFVSFKIGLNPSLKEKALDPSTWLEGLXFREFED
FT                 CGVQKFRVPPKTMRPSTPLLVPHSSSPATPLT"
FT   CDS           1058..4597
FT                 /product="CR1-123_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GFGFPRVRGLRSTKISGXAKNHETIDTITSAPLIISS
FT                 NTTYINLSAPGRTTSSVLEAPYPPITVEQFPPALCSRPGPVYGSGDGVFHT
FT                 LFTGKYXIDSYLQLCVVPDASNDYSQLTKPPTKSPSQATPGCTPASLMEAS
FT                 NPFITVEPILPASSSHPGPVYDYGEEVFQTVNAGKYNDVLSNSLPVTSITS
FT                 SELTTSRSTPDYTLQVASNQQRPSRSTNAGLNVQPTHRLLSVYYQNVRGLR
FT                 TKISQLRLLLSSCDYDVLVFTETWLRPDINNAEISTEYEIFRCDRSDFTSS
FT                 YSRGGGVLVAVKSHHKCESISLPNCTHLEQIAVRVALEHRSLYIVAIYLPP
FT                 NSIAELYSAHADAVEHIAKLSSSSDVILSVGDFNLPNLRWQCDEDSNCCIP
FT                 LNVSSESEQLLIETLFSIGLQQINNVVNVNSRLLDLSFTSLPEALDVIVPP
FT                 VPLLPVDNHHAPFILLLDDSGENFSELDEWDEVPTFNFNACDFDVLNAAFA
FT                 DTDWHFLQQCASVNEMLTAFYDKLYDICNVHVPRRRKKLNSMYNKPWWSNE
FT                 LRNSRNILRKARKRFFHTRSESERENLHRVETAYKSLLKSSFENYISVVQS
FT                 KVKQNPTFXWDFVGKQKSTKRVPSNVMLNGCQACSHEEAANLFASFFESVF
FT                 STTTPTLPPNCFHHIPSFDFSFPVIQFSVIDVLNSFNDLDVTKGPGTDAIP
FT                 PLLLKNCSTVLADPVSLIFNRSIHERTFPTIWKRSCIIPIHKSGNHAQVTN
FT                 YRGVSILCCLGKVFEKLVHSALYNVAAPLISDSQHGFMKHRSTSTNLMVYV
FT                 TALSRELEMGNQVDSIYIDFAKAFDTVPHKAIISKMTHIGFPNWITEWLLS
FT                 YLSDRTAFVSVNSAKSRSFSITSGVPQGSVLGPLLFNIFVNDLSLLLKSFS
FT                 LSFADDLKMYRTITSSVDCVTLQEDVNTVLIWCGNNGMSVNSSKCKVISFT
FT                 RRSRSVSHDYFIGSVIIERVDSICDLGVTIDAKLKFNDHVGATVAKSFAAL
FT                 GFIRRHAADFTDVYALKTLYCSLVRSIVEYAVPVWCPYYTTHILAIERVQK
FT                 KFIRFALRTLPWNDPSNLPPYPDRCRLIDLQTLRSRRVEMQCLFIFDVLQG
FT                 NIDSPALLEQVPLNIPPRQLRNYPFLAIPYHRTNYGQNNPFDACLRVFNVK
FT                 SNVFDFNLSKNVFRGRIRVNI"
XX
SQ   Sequence 4682 BP; 1270 A; 1135 C; 947 G; 1320 T; 10 other;
     catcactggc ctatatgtaa gcttggtgat aaccgtgcgc gaattttcaa gcttttaaac        60
     cgtgtaatac aacctataaa ttcattacgt cgttctaatt gttatctgtc tgtgcagttc       120
     tactagattt cgtttgtgat tactgaaatc gacgcstcgt agtgtataaa atcacatcaa       180
     attttcggac attcagagtg tttttgttgc tgttgttaca atcttcatcc ctctatccac       240
     cctctcgccg attttttcat ccgaagcaat atctgacgga atccaacgca aacttccaat       300
     cgagcttgcg tgctttagta ctcgaattct catcaacact gcctacggtt aggcgcatca       360
     acatggtcaa gcactgcaca aagtgtgatk aagcaattgc cggcaccgat tacgtagctt       420
     gccgcggata ctgtggaggt ttcttccata tgaatgcctg ctcaggcgta acacgtgcac       480
     tcctatcgta cttttcgtct catcgaaaaa atctgttctg gatgtgcgac ggatgtgcaa       540
     atctttttga gaattcgcat ttccgtatga tctccgaaca agmtgagcag cactcacctc       600
     tcggctcttt gaccgctgct atcaatgagt tacgaactga gattaagcaa attcgttcca       660
     agccaattat gcaattttca ccggcctcaa acacacgttg gcctgcaatc gagcaacaaa       720
     gggctgccaa acgacctcgt gaaatggata gtccagtaag agctcctaaw tgctgcgtag       780
     ggagtagaaa agcacaggaa aacgacgtca caatttccgt tacccccaac gtggtggatg       840
     aaaaattctg gttgtacctc tcaagaatcc gtcctgatgt caccgttgaa tcaatgactg       900
     ctttagtcaa agatagcctt caaattgacg tggatccgcc cgtagtgaag cttgtcccta       960
     aaggaaagga gttaggctca ctctcattcg tttcctttaa aattggcctc aacccctcgc      1020
     tcaaagaaaa agcccttgat ccctccacgt ggcttgaggg tttggwtttc cgcgagttcg      1080
     aggactgcgg agtacaaaaa tttcgggtwc cgccaaaaac catgagacca tcgacaccat      1140
     tactagtgcc ccactcatca tctccagcaa caccacttac ataaatctst ctgccccggg      1200
     acgcactaca tctagcgttt tggaagcccc ttatcctccc atcacagtcg agcaattccc      1260
     gccagcgctc tgcagtcgtc ccggtcctgt gtatgggtct ggagacgggg tcttccacac      1320
     tctttttact ggcaagtatc mcatcgatag ttatctccaa ctttgtgttg ttcctgatgc      1380
     ttcaaacgat tacagccaat tgacaaaacc gccaactaaa tcaccgtcac aagctacacc      1440
     gggatgcacg cctgcaagtc ttatggaagc ctccaatcct ttcatcacag tcgagcccat      1500
     cctgccagcg tccagcagtc atcccggtcc tgtgtatgat tatggggagg aggtcttcca      1560
     aactgtcaac gcaggcaagt acaatgatgt tttgagcaat tctcttccgg taacgtccat      1620
     cacttccagt gaactgacaa cttcgcgatc gacacctgat tatactctac aagttgcatc      1680
     gaaccaacag cggccttcac gttcaactaa cgccggactg aacgttcaac caacccaccg      1740
     tcttctgtcc gtttattacc agaacgttag aggtttgcgt accaaaattt ctcagctacg      1800
     cttgctttta tcgagctgtg actacgacgt gctagtcttt acggagacat ggctacgacc      1860
     ggatataaac aacgcagaaa tctcgacaga atatgaaata tttcgttgcg accgtagtga      1920
     tttcaccagt agctattcaa gagggggtgg ggtattggtg gctgtcaaaa gtcatcataa      1980
     atgcgaatcc atttcattgc caaattgtac acatcttgag cagatagcgg ttcgtgttgc      2040
     attggaacat cgctcattgt atatcgtggc tatatacctc ccgccaaact cgatcgccga      2100
     actctattca gcccacgctg acgcagtaga acacatagcg aaattgtcat ctagttcgga      2160
     tgttattctc tcggttggag atttcaatct tcctaatctg cgatggcaat gcgacgaaga      2220
     ttccaactgc tgcattccat tgaacgtttc ttctgaatca gagcagttgc ttattgaaac      2280
     tttattctca attggtttac aacaaataaa caatgttgtg aacgtgaata gtagattgct      2340
     ggatttgtcg ttcaccagcc taccggaagc tctcgatgtc attgtacctc ctgttccact      2400
     attacctgtg gacaatcatc atgcaccgtt tattttacta cttgatgata gtggagaaaa      2460
     cttttctgaa cttgacgaat gggatgaagt ccccactttc aattttaacg cttgtgactt      2520
     cgacgtattg aatgctgcat ttgccgatac cgactggcat tttcttcagc aatgtgcatc      2580
     tgtaaatgaa atgttaacag cattctatga caagctwtac gatatatgta acgttcacgt      2640
     ccctcggagg aggaaaaagc ttaattctat gtacaacaaa ccatggtgga gcaacgaact      2700
     gcggaattca agaaatattc ttagaaaggc acggaaacga ttttttcata cgagatctga      2760
     aagcgaacga gaaaatctac atagagttga gacagcgtac aaatcgcttc taaaatcttc      2820
     cttcgaaaat tacatttccg tggttcaatc gaaagtgaaa caaaatccaa cgttcwtctg      2880
     ggacttcgtc gggaaacaaa aaagcaccaa gcgtgttcct agcaacgtta tgctcaacgg      2940
     atgtcaagca tgttcacacg aagaagctgc gaatctgttt gcgtctttct tcgaaagtgt      3000
     tttcagtaca accacaccaa ctctccctcc caactgcttt caccacattc catcgtttga      3060
     cttctcgttt cctgtaattc agttttctgt gatcgacgtg ctgaattcat tcaacgatct      3120
     tgatgtcact aaaggaccgg gaactgatgc catacctcca cttctactga aaaattgttc      3180
     taccgtatta gccgaccctg tttcgttgat attcaacaga tccatacatg aaagaacatt      3240
     cccaacaata tggaagcggt cctgcattat tccgattcac aaatctggaa atcacgccca      3300
     agtcaccaat taccgtggcg tctcgatttt gtgctgccta gggaaagtct ttgaaaaatt      3360
     agtgcacagt gctctgtata atgtagcagc tcctctcatc tctgatagtc aacatggctt      3420
     catgaaacat agatccactt cgacaaatct aatggtttat gtaactgcgc tttctcgtga      3480
     gttagagatg ggaaatcaag ttgactccat atacatagat ttcgccaagg catttgatac      3540
     tgtaccgcat aaagccatta tcagcaaaat gacgcacatc ggattcccta actggatcac      3600
     ggaatggctg ctgtcgtatt tatctgatcg gacagcattc gtgagtgtta attcagcgaa      3660
     atctcgctcg ttcagcatta cgtctggcgt accccaagga agtgtcctgg gtccgctgct      3720
     tttcaacatc tttgtcaatg acttatctct actgctcaaa tcatttagtc tttccttcgc      3780
     tgatgatctg aagatgtacc gcaccataac ttcatcagtc gattgtgtaa cgctgcaaga      3840
     ggacgtgaac actgtgctga tctggtgtgg aaacaacgga atgagtgtca acagtagcaa      3900
     gtgcaaggtc atatccttta ctcgccggag tcgctctgtc agtcacgact atttcatcgg      3960
     atcggttata atagagcgag tggattcaat ctgcgatctg ggagtaacca tcgatgcgaa      4020
     gctcaaattc aacgatcatg tgggagccac agtagcgaaa tccttcgctg ctctaggctt      4080
     cattcgccgc cacgctgctg acttcaccga tgtctacgcc ttaaaaacgc tctattgttc      4140
     cttggtgcgt agtattgtag agtatgctgt cccagtttgg tgcccctact acaccacaca      4200
     tatccttgcc attgaacgtg tgcagaaaaa attcatacgg tttgcgctgc gcactcttcc      4260
     gtggaatgat ccgtcaaact taccgcccta ccctgatcga tgtcgattga ttgacctgca      4320
     aacattgagg agtagacgcg tagaaatgca gtgtctcttt attttcgacg tcttgcaagg      4380
     gaacattgac agccctgcac tattggaaca ggtcccgctg aatattccac cacggcaact      4440
     acggaactac ccgttcctgg ccataccgta tcacagaaca aattatggtc agaataatcc      4500
     gttcgatgcc tgtcttcgtg tgtttaacgt caaaagcaat gtatttgatt ttaacttgtc      4560
     taaaaatgta tttcgtggta gaattagagt taatatttag aatatgcagt acagtaattc      4620
     agtctgtgtg acttcatgtc aaagacggtg gaaataaaat aaaataaaat aaaataaaat      4680
     aa                                                                     4682
//
ID   CR1-124_AAe repbase;    DNA;    INV; 5458 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-124_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5458
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1212-1212 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           301..1728
FT                 /product="CR1-124_AAe_1p"
FT                 /translation="MTTVTCSACTQIIVAETDRVYCFGGCEQILHLRCSEL
FT                 RPSDSSTLRNNIALKYMCFACRKKQICLNDLRSKYSELLERMDDVCVKVSK
FT                 YESILNQLETNLLGKIEASLMSTVGSKIESLFALRSAMNDCPTYATVARGS
FT                 DNRSVNTNAAAIVSSMPTSKKIKPGKSSLIANENVDDGWILRSGKRRAKST
FT                 ANGNYATAKNTSDNEQLTTAKRSSNLPSTTSSAGKKFEQSVIIKPKENQQA
FT                 DVTQRHIREKIDPIDFSVKGIRSKENGDVIVRCETSTHAQKLVSAAVDILS
FT                 DDYEVSILKPLKPRLKVIGLSENLDASEFVSTLKKQNGLPDSSDVTLIHMR
FT                 KIEKWKQFPFIAVLETDAQTFETLIQRQRVNIRWDRCQVTENVNVYRCFKC
FT                 SRYGHKAATCVNPTCCPLCAGDHAVQECDATFEKCINCELKNKQRKLPYDE
FT                 LLNINHSAWSSECPVYQKRLKAVRKMVDYSA"
FT   CDS           1732..5079
FT                 /product="CR1-124_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSVNYCAIYASIGKTNTSICPAGASIDSARNQMDLSP
FT                 QMTRSTDVSSDTQVMDARSTNSDDCLVDNPACSGNFRERICHAEARQDAAL
FT                 LNSRSVLQTDSSTAIFNGCTPDNLAVVPGNDGSICLAEEVGDTAPPESSSR
FT                 CNSSSDNSVPQIIDQVATRHKLSFFYQNVRGLRTKIDDFFIAVSACQYDVI
FT                 VLTETWLDEVILSPQLFGNSYTVFRNDRNQRNSSKSRGGGVLIAITSRISC
FT                 CRESSPVNDSLEQIWVKLKLSSFNVSVGVIYLPPDRKTSVTCIKNHMESIE
FT                 SVYSNLDAHDHAFMFGDYNQSSLLWKTTSTKSTVDIMRSTVSTACSSLLDG
FT                 FCLNGLTQINHVFNRNGRLLDLVLVNEAAFGNCTLSEAIEPLTALDNDHPA
FT                 LEVEAYLPDPIKFDEATPVPGLDFRKADFDGLNEALLRYDWSFLETVNSID
FT                 DAIENFTRICNATMSNYVPLRRPPAKPSWGNFRLKHLKRKRSKALRKYCRT
FT                 HCMLAKQALIRASNKYRLYNRLLYKRYTSRMQENLRKNPKLFWNFVKSKRN
FT                 ETGLPTEMFLGDAFASSDLSKCNLFARHFQNAFNDTASTDSQVEIACKETP
FT                 LNVFELAISRITVRQVASAINKMKYSTADSPDGIPSCVLKRCCDAISPVLA
FT                 ILFNISLQQRKFPESWKLSIMFPVYKKGDKRNIENYRGITSLCASSKVFEI
FT                 VVYDSIFTACKNYISIEQHGFYPRRSVSTNLVHFVSNCIRAMDSGLQTDVI
FT                 YTDFKSAFDRVDHNILLKRLAILGISSDFVCWLKSYLMDRKLCVMIGSESS
FT                 DTFSNISGVPQGSNLGPLLFSLFINDLSRLLPSGCKLFFADDVKIFMIIES
FT                 FNDCEKLQQMVDKFSHWSSRNMLTLSINKCSVISFHHKQRPIVYDYAINNI
FT                 QLQRVYQVRDLGVTLDSALSFRIHFEDIISRANRQLGFIFKICGEFTDPLC
FT                 LRSLYCALVRSLLESNVVVWCPYQLTWINRIETIQRRFVRRALRNLPWRDS
FT                 MNLPPYADRCRLLGIDTLVNRRFIQQAAFVAKVLTGELDSPEILSRLNIYA
FT                 PQRILRQRDFLTITPSNTVYGQNDPISAMSTVFNEVYVYFDFNVPAATFSR
FT                 RLQQLNRS"
XX
SQ   Sequence 5458 BP; 1605 A; 1155 C; 1112 G; 1585 T; 1 other;
     ctatatgcta tatttaccat actgtgctga tgtgaaagtg atgttctcac gttaaatatt        60
     cgttttttgt ctgcaaaatc cgtgatttgt gtgataagtc ttacattagc gagtagagaa       120
     ttcaatgctt aacccacgca tggtgaacga ttgtacattg catttagtgt gtccgtttat       180
     tttgtgaaaa agttatagca gtttctcgat ttcgatcaac atcggtagaa aaacaacagt       240
     atcacaaaag ccagcttctg tttcgttgga ggggggacat gcgtgtccaa cgtcgctccc       300
     atgacgacgg tcacatgcag tgcgtgcact cagatcatcg ttgccgaaac tgatagagtc       360
     tattgtttcg gtgggtgcga gcaaattttg caccttcggt gttctgagct tcgtccgtct       420
     gattctagca ctttgagaaa taacatcgct ctgaagtaca tgtgctttgc atgccgcaaa       480
     aaacagatat gtttgaatga tctaagatcg aaatactctg agctgctgga gagaatggac       540
     gatgtctgtg taaaagtatc caaatatgaa tcgattttga atcagctgga gacaaatctt       600
     cttggtaaaa tcgaagcaag cctaatgtca accgtcggta gcaagatcga atctctgttc       660
     gccttgcgta gcgcgatgaa tgattgccca acttacgcaa ctgtagcacg tggttctgac       720
     aatcgttctg taaataccaa tgctgccgct atcgttagct cgatgccgac tagtaaaaaa       780
     attaagcctg gcaaaagttc tcttattgcc aatgagaatg tggatgatgg ttggattctg       840
     cgatctggga aacgtcgtgc aaaatctact gcgaatggaa attatgcaac tgcgaaaaac       900
     acgtccgata atgaacagct tactactgca aaacggtcaa gtaacttgcc atcgacaacg       960
     tctagcgctg gtaaaaagtt tgaacagtct gttataatca aaccgaagga aaatcaacaa      1020
     gcagatgtaa cacaaaggca tattcgagaa aaaatcgacc ctatcgattt ttccgtgaaa      1080
     ggcatcagat caaaagaaaa cggtgatgtt attgtgcgat gcgaaactag cacccacgcc      1140
     caaaaacttg taagcgcagc tgttgatatt ttatcggatg actatgaagt ttccatactc      1200
     aagcctctca aacccagatt aaaagtcatc ggcttgtccg agaatctaga tgcctcagaa      1260
     tttgtatcca ctctgaagaa gcaaaatgga ttgccagatt catctgatgt aacattaatt      1320
     cacatgcgca aaatcgaaaa atggaaacaa tttccattca ttgctgttct agagactgac      1380
     gctcagacat tcgaaacact gattcaacga cagcgtgtga atattcgttg ggataggtgt      1440
     caagttactg aaaatgtaaa cgtttatcga tgcttcaaat gctcaaggta tggtcacaaa      1500
     gctgctactt gtgtgaatcc tacttgctgt cccctgtgcg ctggagacca cgctgttcag      1560
     gaatgtgatg ccacttttga gaaatgtatc aactgcgaac tcaaaaacaa gcagaggaag      1620
     ttgccatatg acgagctgtt aaatatcaat cattccgcct ggagttcaga atgtccagtt      1680
     tatcagaagc gtttaaaggc tgtgagaaaa atggtggatt attctgctta gcaatcagtt      1740
     aactattgtg ctatatatgc ttctattggt aaaactaaca ctagtatatg tcctgccgga      1800
     gcttcaatag attctgcacg aaatcaaatg gatctttcac cacagatgac cagatctact      1860
     gacgttagca gcgataccca ggtgatggat gcaaggtcaa ccaattctga tgattgtctt      1920
     gtggacaatc ctgcttgctc aggtaatttt agagaacgta tatgtcatgc cgaagctaga      1980
     caagatgctg ccctccttaa tagtcgttcg gttttacaga ctgactcttc tactgcgata      2040
     ttcaatggat gcaccccaga taacttagct gttgttccag gtaacgatgg cagtatatgt      2100
     cttgccgaag aagtaggtga tactgcaccc cctgaatcaa gctctcggtg taattccagc      2160
     tccgacaact ccgtcccgca gatcattgac caagtagcaa cacggcacaa gctttcgttt      2220
     ttctatcaaa acgttcgcgg actacgcacc aagattgacg acttcttcat tgcagtatcg      2280
     gcatgccagt atgacgttat agtgctaaca gaaacttggc tcgatgaggt aatactgtct      2340
     cctcaacttt ttggaaactc ctacacagtc ttcagaaatg acagaaacca gcgtaacagc      2400
     agtaaatccc gtggtggcgg tgttctaatt gccattacat cgagaataag ttgctgtcgc      2460
     gaatcttctc cagtaaacga ttctctagag cagatttggg tgaaactcaa attatccagt      2520
     ttcaatgtta gcgttggagt catatacctt cctcccgatc gtaaaacgag cgtaacttgt      2580
     atcaaaaatc acatggaatc tattgaatca gtttattcca atttggatgc acatgatcat      2640
     gccttcatgt tcggcgatta taatcaatcc agtttattgt ggaaaacaac atcgaccaaa      2700
     tcaactgtgg atattatgcg atccactgta tcaactgctt gcagtagtct tcttgatggg      2760
     ttctgtttga atgggcttac tcaaatcaac cacgttttca atcggaatgg tcgtctcctt      2820
     gatttagttc tggtgaatga agcagcattc ggaaattgca ctctttcaga agccattgag      2880
     cctctcacag ctctcgacaa tgatcatcct gccttggaag ttgaagcata cttgcctgac      2940
     cccatcaaat ttgacgaagc cacacctgtt cctggtcttg acttccgtaa agcagatttc      3000
     gatggtttaa atgaagcttt gcttcgatat gattggagtt tcttggagac agttaatagt      3060
     attgacgatg ctattgaaaa ctttacacgt atttgtaatg ctaccatgtc caactatgtt      3120
     cctttacgta gacctcccgc taagccttca tggggtaatt ttcgtctgaa acacctcaag      3180
     cgaaaaagat caaaagcact tcggaaatac tgcagaaccc attgcatgct tgccaagcag      3240
     gcattaatca gagctagcaa caaatatcgg ttatacaatc ggcttctata caaacgttat      3300
     acttcacgaa tgcaagaaaa tttacggaaa aacccaaagc tgttctggaa ttttgtgaaa      3360
     tctaagcgca acgaaacagg cctacccacg gaaatgtttt tgggagatgc tttcgcttct      3420
     tcagacctaa gtaaatgcaa tctatttgct agacattttc agaatgcatt caacgacact      3480
     gcatctactg attcccaggt ggaaattgcc tgcaaagaga ctccgcttaa cgtctttgag      3540
     cttgcgatca gtcgcataac ggtgcgacaa gttgcttccg caataaataa aatgaaatac      3600
     tcaaccgcgg atagccctga tggtattccg tcctgcgtat tgaaaagatg ctgtgatgct      3660
     ataagtcctg ttctggcaat tttgttcaac atctcgctac agcaacgcaa gtttccagaa      3720
     agttggaaat tatccattat gtttcctgtg tataaaaaag gagacaagag aaacatagag      3780
     aactatcgtg gaatcacatc tttatgtgcc agctctaagg tattcgagat agtagtctac      3840
     gactcaatat ttactgcttg taaaaactat atatcgatcg aacagcatgg tttttaccca      3900
     aggagatcag taagcacaaa tcttgttcac ttcgtttcca actgcatacg ggccatggac      3960
     agtggcttac aaacggatgt gatatatacc gatttcaaat ctgcatttga ccgtgtagat      4020
     cacaacattt tgttaaagcg cctcgcaata ttaggcatct cttcagactt tgtttgctgg      4080
     ttgaaatcgt acctgatgga tcggaaactc tgcgtaatga ttggctctga atcttctgat      4140
     actttctcaa acatatcagg cgttccacaa ggaagcaatc ttggtccact gctattctcg      4200
     ctttttatta acgacctctc ccgcctatta ccatctggat gcaagttgtt ctttgccgac      4260
     gacgtgaaaa tcttcatgat cattgaaagt ttcaacgact gcgaaaaact tcagcaaatg      4320
     gtagacaaat tttcccattg gagttcgaga aacatgctta ccttaagtat caacaaatgc      4380
     agcgtcatat cgtttcatca caagcaaaga cctattgtct atgattatgc aatcaataac      4440
     attcagctac agcgagtcta tcaagtacga gatttaggcg ttacgctgga ttcagcactc      4500
     agcttccgga ttcacttcga ggatatcatc tctagagcta acagacagtt aggcttcatc      4560
     ttcaaaattt gtggcgaatt cacggaccca ctttgcctcc ggtcattata ttgtgcactc      4620
     gtgagatctt tattagaatc aaatgttgtt gtatggtgcc cctatcaact gacgtggata      4680
     aataggatag agacaattca aagacgattt gtaagacgtg ctctacgtaa tctaccgtgg      4740
     cgtgattcga tgaacttgcc accatacgcg gaccgatgtc gccttcttgg cattgatacc      4800
     cttgtcaaca gaagatttat ccaacaagcg gcttttgtgg caaaagtact caccggagag      4860
     ttggattcgc ctgagattct gtcccgtttg aatatctacg cacctcaacg aattttgcgg      4920
     caacgtgatt ttttaacaat tacacccagt aatacggttt atggccaaaa tgatccaata      4980
     agtgccatgt ccaccgtttt caacgaagtt tacgtatatt ttgacttcaa cgtgcctgct      5040
     gcaacatttt caagaaggct tcaacaactc aaccgatcat gatgtcagga cgaaaaatca      5100
     ggcgagttcc gttcctaaag tttattttgg aaagaattaa gctacccatt tttcattttc      5160
     agcagtgttt ccatcttgga cagccagaga gtgtgacgtc gttgttatcg tccatttgtt      5220
     gaaaaactaa ctatttttaa gtaatgtgct ttgttttaat gttgactttt agcttgtaat      5280
     tggtgcaaaa ttgtaaagca ttgaattgta aatgtaattt tgaaaagatg cggggttttt      5340
     acgccctttg gagaatggca attacagcgc ttgtcaactc caacgggctt ttcctcacca      5400
     ccttcattga gccaaaaggc asatgaagtg aaaagataaa taaacaaata aacaaata        5458
//
ID   CR1-125_AAe repbase;    DNA;    INV; 4611 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-125_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4611
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1213-1213 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..1062
FT                 /product="CR1-125_AAe_1p"
FT                 /translation="MAMEKKHCKECKLEVNDIEPVRCGFCDAFFHISQQCC
FT                 GFNHRANRDILSQGKAMFICNDCRSELNGRSIKRYLQDQLDSQNSTHADGD
FT                 ASDNLTSQVQLLADAVGKLSKKVDVLSMGQMSGSKTNLLLTPTFRKWPKLG
FT                 VKRPRMETEQYESTALNSDRGTRNIDLGDLSIDTIMPVPTPPKFWLYLSGF
FT                 QPLISTDDVQKIVTRCMDLSSPCDVVRLVPKGKDVSNMSFVSFKIGFDPSV
FT                 KEQALQASTWLNGLTFREFVEQPKNYRRTVANPMDINQTPV"
FT   CDS           1164..4529
FT                 /product="CR1-125_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEALEPPTTVEPFQPPFSSRPGPVCGSGVKGFQIDIA
FT                 GKYDFSMISMTSDPFIDSSLSASASSRSTIQTSPLGRNDVSSMEVPKPPTA
FT                 VEFFLPAFSSRPGPACGRGVRDFQPDLEGKFNTVMQSTILDSSIASSQFPT
FT                 EPVRFCSDDVDHDMTTEPMLQICNDDEQGTGVSIYYQNVRGLRTKITDFYT
FT                 SVTASLYDVVVLTETWLDEVIPSCMLFGNDYVVYRGDRTPLTSTKKRSGGT
FT                 LIAVKRTIPSNLIPINDEGLEHVWVSLRMKRSSLAIGAAYIPPDKASDVQL
FT                 TNRHITSMESVIPKHDAVAVFGDYNRPGLRWIRNVNHTCSVDVTSSSLTQS
FT                 NAALLDGMSSNNMWQLNYIKNCYGNTLDLLFVSEELLNGLTIEEVDDPLVP
FT                 IDICHKPFSCTIENCEPSQNTFEDEFDINSLNFRKTDFIGLSQHLTLVDWA
FT                 VVIECPTINEAVERFTTILQNAFAIFVPRRRSPKKPAWSNTELRRWKRRCS
FT                 TAKRLYRKNRTAANKLAFQLASRQYRSLNCRLYKEHTASTEQNLKHNPKCF
FT                 WNFVKSKRKETGLPSSMYLDQKRANTSLDKCELFASFFSSMFDSNSGSTDA
FT                 AMELTPAGCVEVATFEVSIEAMQKATKKLKSSYLPGPDGIASCILKKCSQE
FT                 LLEPLVHLFNLSLRVCTFPTRWKASFMFPVHKKDSKNDVRCYRGITSLCAC
FT                 SKLFEIIVSDYMYCQTKHYISTSQHGFYPGRSVSTNLSEFVSFCLRNIEQG
FT                 RQVDAIYTDLKAAFDKVDHNILLAKLGKLGCSPSFVEWLRSYLCDRKLAVK
FT                 IGSSISRWFVSSSGVPQGSNLGPLLFSLFMNDAIIHIGDGFCLVYADDLKL
FT                 YVLINGKEDCHKLQTLLNKFVSWCRVNRMQLSISKCFVVSFHRKMSHVSFD
FT                 YTIDGELLNRTQIIRDLGVCLDSTLSFRNHHEEIIDKARRQLGFMCKLSKE
FT                 FRDPYTLKSLYVSLVRPILETASIVWDPYHSTVASRIESIQKRFIRFALRN
FT                 LPWSDPLNLPPYEGRCLLIGIETLEQRRKRAKALFVAKLIAAEIDAPNLLQ
FT                 MISFNTPNYAIRRPEFLRLPFRRRDYASQEPVRSMMECFNEVVHLFDFNIT
FT                 TKKFKTRLLRYVYN"
XX
SQ   Sequence 4611 BP; 1282 A; 1002 C; 1022 G; 1305 T; 0 other;
     cactgtgtat ttgttgtaaa cagtcacgta tcttagtcgc cggctatttt gatgtttttc        60
     gtcgtgaaaa cgtagtttaa attttgttca atttatcaca tttgtcgttt cgtgaaaagg       120
     tgaaccattt gtgtgtattg gacaaccaaa aatcgaccgt gaaattgctg aaaacacgga       180
     attaatttca ctcgatctcc cgactaacca agagcaatgg cgatggaaaa gaaacattgc       240
     aaagaatgca aactggaggt gaatgatatt gaacccgtac ggtgtggctt ctgtgatgcc       300
     ttttttcaca ttagtcagca gtgttgtgga ttcaatcatc gagccaatcg agatatactg       360
     tcgcaaggaa aggcgatgtt catttgcaat gactgccgat ctgaactgaa cggtcggagt       420
     ataaaacgct acctacagga ccaattggac tctcaaaact caactcatgc tgatggtgat       480
     gcttcggata atctgacatc ccaagttcag ttgctcgctg atgccgttgg taaattgagt       540
     aagaaggttg acgtgctgtc gatgggtcaa atgagtggaa gcaaaacaaa cctgctgctt       600
     acacctactt ttcgaaaatg gcctaaattg ggtgtgaaac gtcctcgcat ggaaaccgag       660
     caatatgaat ccactgcttt gaattccgat cgtggcacta ggaacattga tcttggcgat       720
     ctgtccatcg acactattat gcccgtacca actccaccta agttctggtt atacctgtct       780
     ggtttccaac cactgatctc gaccgatgat gtacagaaga ttgtgacacg ctgtatggat       840
     ctttcttcgc cgtgtgatgt cgtacgttta gtgccgaaag gaaaagatgt ttcaaacatg       900
     tcgtttgttt ccttcaaaat tggctttgat ccgtcggtga aagagcaagc actgcaggcg       960
     tcaacttggt tgaatggact gacatttcgg gagttcgtgg aacaaccaaa aaactacagg      1020
     cgtacggtgg ccaatcccat ggacatcaat cagacacctg tttaacgtgt tgcatttcga      1080
     actatgaaga ccgtggaatc gccattctcc cttatccgtc atcgcaaatc aagctaccac      1140
     tgggacgcat cgatgttggt cttatggaag ccctggaacc ccccaccaca gtcgagccat      1200
     tccagccacc gttcagcagt cgtcccggtc ctgtgtgtgg gagcggtgta aagggcttcc      1260
     aaatcgatat tgcaggcaag tacgattttt caatgatctc gatgacttct gatccgttca      1320
     tcgattccag cctatctgca tcagcttcat ctcgttcaac aattcaaact tcaccactgg      1380
     gacgcaacga tgttagctct atggaagttc cgaagccccc caccgcagtc gagtttttcc      1440
     tgccagcgtt cagcagtcgt cccggccctg cgtgtgggcg tggtgtaagg gacttccaac      1500
     ccgatctcga aggcaagttc aataccgtca tgcaatcaac gattcttgat tcgtccattg      1560
     cttctagcca atttccgact gaaccagtcc ggttctgtag tgacgatgtt gaccacgata      1620
     tgactactga accgatgctt caaatctgca acgacgacga acaaggcact ggggtctcga      1680
     tttattatca aaacgtcaga ggactacgga caaaaatcac ggacttctac acttctgtta      1740
     ctgcttcgct ctacgatgtg gtcgttttga ctgaaacctg gttggatgaa gtgattccat      1800
     catgcatgct gtttggtaat gattacgtcg tttatcgtgg tgatcgtaca ccgctaacaa      1860
     gcaccaagaa acgttccggc ggtactctta tcgcagtgaa gcgcacaatc ccgtccaatt      1920
     tgatcccgat taacgacgag ggacttgagc atgtgtgggt gtccctgaga atgaagagaa      1980
     gtagtcttgc tattggagca gcatatattc ctccggataa agcgtcggat gtgcaattga      2040
     cgaatcgcca tattacaagc atggaatctg ttatccctaa acatgatgca gttgctgtat      2100
     ttggtgatta caatcgacca ggtcttcgat ggataagaaa cgtaaatcac acatgttcag      2160
     tggacgtcac ttcatcttct ctgacgcagt ccaatgcggc attgctagac ggaatgagct      2220
     caaacaatat gtggcaattg aactacataa aaaactgcta cggaaacacg ttggatttgt      2280
     tattcgttag tgaagaattg ttgaacggtt tgactattga ggaagtcgac gatcctctgg      2340
     ttccaattga catttgccac aagccttttt cttgtaccat cgaaaactgc gaaccctcgc      2400
     aaaatacctt cgaggacgag tttgacatca attcgttgaa tttccgaaaa accgacttca      2460
     ttgggttgag ccaacacttg acgctagtgg actgggcggt tgtcatagaa tgtccgacta      2520
     taaatgaagc tgttgaaaga ttcacgacta tccttcagaa cgcttttgct attttcgttc      2580
     cacgtcgacg ttctccgaaa aagccagctt ggtcgaacac tgagctgcgt cgttggaaaa      2640
     ggcgttgcag cacagcaaaa agattgtatc gcaaaaatcg cactgcagca aacaagttgg      2700
     catttcagtt ggcgagtcgc caataccgca gtttgaattg cagattgtac aaagaacaca      2760
     ctgcctccac agaacagaat ttaaaacaca atccgaaatg tttttggaac ttcgtaaaat      2820
     ccaaacgcaa agaaactggt ttgccgtctt caatgtatct ggatcaaaaa cgtgccaata      2880
     cttcgttgga caaatgcgaa ttgttcgctt ctttttttag ttccatgttt gattcgaact      2940
     ctggaagcac tgatgctgcc atggaattga ctcctgctgg atgtgtagaa gtagctacat      3000
     tcgaagtctc aattgaagca atgcagaaag cgacgaagaa gttgaaatca tcatatcttc      3060
     ctggacctga cggaattgcc tcgtgtatcc tgaaaaaatg cagtcaagaa ttactggagc      3120
     ctctagttca tcttttcaat ctttcactga gagtctgtac cttccctaca cgctggaaag      3180
     catcgtttat gtttccggtg cataaaaagg acagtaaaaa tgatgtacgg tgttatcgtg      3240
     gtattacgtc gctttgcgcg tgctcaaagt tatttgagat tattgtgtcg gattacatgt      3300
     attgccagac gaaacattat atctctacga gccagcatgg attttatcca ggaagaagtg      3360
     tatcaacaaa tttgagtgaa ttcgtctcgt tttgtctacg gaatatcgaa caaggccggc      3420
     aggtagatgc aatttacacg gatctgaaag cagcgtttga caaggttgat cacaacatat      3480
     tgcttgcaaa gttgggcaag cttggatgtt cgcctagttt tgttgaatgg cttcgttcgt      3540
     acctctgcga taggaagctg gctgtaaaaa taggatcttc tatttcacga tggtttgtga      3600
     gcagttctgg tgttcctcaa ggaagcaact tgggcccgct tttgttctcg ctgtttatga      3660
     acgacgctat tatacatatt ggagacggct tctgcctggt atatgcagat gatttgaagc      3720
     tttacgttct gataaatggt aaagaagact gtcataagct ccaaactctc cttaacaagt      3780
     tcgtatcgtg gtgtcgtgtc aacaggatgc agcttagtat ttccaagtgc ttcgttgtta      3840
     gcttccatcg aaaaatgagt catgtgtcgt ttgactacac tatcgacgga gagttgttaa      3900
     acagaactca aattattcga gaccttggcg tgtgtctgga ttccactctt tcattcagga      3960
     atcaccatga agagatcatc gacaaagcac gtcgccaatt agggtttatg tgcaaattga      4020
     gcaaagagtt tagagacccg tacacgctca aatcgttgta cgttagtctt gttcgaccaa      4080
     tccttgaaac cgcttcaatt gtttgggatc cctaccacag cactgtagct tcccgtatag      4140
     aatccattca aaaacggttc atcagatttg cactacgaaa cttgccatgg agtgatccac      4200
     taaatctacc accgtacgag ggtcgctgtc ttctgatagg aattgaaaca ttggagcaaa      4260
     gaagaaaacg ggctaaagct ctgtttgtag ctaaactaat agctgcggag attgatgcgc      4320
     cgaacttgct tcaaatgatt agcttcaata ctccaaacta cgccattcgc cgtcccgagt      4380
     ttcttcgatt gccattcaga cgacgagact acgcttccca agaaccagtg cgatcaatga      4440
     tggagtgttt taacgaagtt gttcatctgt tcgattttaa tattacgacc aagaaattca      4500
     agacaaggct tttgcgatat gtttataact agttctaaga ttttattcat taagactcaa      4560
     aagtcggatg aaatatacaa ataataataa taataataat aataataata a               4611
//
ID   CR1-126_AAe repbase;    DNA;    INV; 3976 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-126_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3976
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1214-1214 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 18 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..708
FT                 /product="CR1-126_AAe_1p"
FT                 /translation="MEKKQCGACQLEVNEIEPLRCGFCDVYFHIGPQCCGF
FT                 NLSRPSRDLFSQGKALFMCPSCREELNGRSIKSYITDMQESNIPPPDDLQI
FT                 QVQKLTKLVDTVCQKVDRCLNNTVPADRTVRTEEIWPRLGVKRRCGNDDQP
FT                 IPAAPDRGTNSIDLSDLSVPCLTPEAPPPKFWLYLSGLHPQVTADDVQKIA
FT                 SRCLKLSAPADVVRLVPRGADVTKLSFVSYKLG"
FT   CDS           741..3902
FT                 /product="CR1-126_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="CFHLAQWITVPGIHRYVKKPDFDHGLRHGHGEFKLML
FT                 FPVDGGDSRVVSMNENCITRSHVDGENPRVSTRGEYLNHSPVSSAPNASPL
FT                 QNLNVDNRHLWVYYQNVRGLRIKIDTLFCNTIECNYDVIILIETGLNESIN
FT                 STQLFGDNYNVYRCDRSARNSNKSTFGGVLIAVHRRFNSTIIDTINGVFLE
FT                 QVCASVAVGSKRLQLCAVYIPPDKSKDVSAFNDHVESIGELCSLCSVHDHV
FT                 LVCGDYNQPKLLWTRNDDELRPANSITLTTTSTVLIDGMDFLNLCQANTER
FT                 NYLGRTLDLVFGSPDLLPVVLVPASPLVPVDLHHPPLEISLPSINVSLNDS
FT                 TGGNVTSDLSLDFNKIDFDALSVFLAELDWSNILAELNADEMAESFCTILV
FT                 NWMNTNVPIRRPTPSPAWSTPLLRTLKRKRNALQRRLRRDHCSDNKRLFHQ
FT                 ACNEYRNLDSSLYKSYVLRMQSNLRRNPKSFWNFVNSKWKSTPIPTSVYLD
FT                 GVEASNSTEKCELFAAHFSSVFSTESVTPSEVDAAITDVPSNLLDLDTFRI
FT                 TPNMITEAAKKLKCSFSPGPDGIPTAVFCRCTDALAEPLCKIFNQSFDDAR
FT                 FPRIWKQSFMVPVHKKGDKRDVKNYRGITNLSAASKLFEMIISHVILEQAK
FT                 CYISADQHGFMPGRSVTTNLLDFTTTCFEQLENGAQIDVIYTDLKAAFDSI
FT                 NHDILLAKLAKLGASSRLSSWFSSYLRERSLRVKLDSNTSSCFMSSSGVPQ
FT                 GSNLGPLLFLLFFNDVMVLLGSGCGLSYADDLKLYATIHSIDDCSRLQSIL
FT                 DIFVDWCHRNKLTVSVPKCMVMSYFRTTRPLIQDYVIDGSVLNRTDEFNDL
FT                 GVLMDPKLTFNLHRSNVIAKANRQLGFISKISRDFTDPYCLKALYCSLVRP
FT                 ILECAALVWAPHQLSWSLRMESVQRRFIRVALRNLPWRDPRNLPPYANRCK
FT                 LLDLDSLDRRRKTQQAAFIAKLLNGEVDCSRLLAVLNIRVAPRMLRGTALL
FT                 QPRFHRTAFGYHEPMTEMIRIFSSVEGLHEFGESSLRFTSRIRRQNDF"
XX
SQ   Sequence 3976 BP; 1020 A; 940 C; 886 G; 1130 T; 0 other;
     tgtttattgc tgcgagtggc tgttttgttc tacatcagta tggagaagaa acaatgcggc        60
     gcatgtcagc tggaagtgaa tgagatcgag ccgttgcgct gtggattttg tgatgtttac       120
     ttccacattg gtccgcagtg ctgtggattc aacctcagtc gaccgagtag agatcttttc       180
     tcacaaggaa aggcattatt tatgtgtccg agctgccggg aggaactaaa cgggaggagt       240
     ataaaatcgt acatcaccga tatgcaagag tctaacatac ctccgcctga tgatctgcaa       300
     attcaagtgc aaaagttgac taagttggtg gatactgttt gccaaaaagt cgatcgttgc       360
     ttaaataata ctgttcctgc tgatcgtaca gttcgcactg aggaaatctg gccgcgtcta       420
     ggtgtgaagc gccgttgtgg caacgatgat caaccaatac ccgcggcgcc tgatcgtgga       480
     accaattcta tcgatctcag tgacttgtct gtgccgtgtt taacaccaga agctcctccg       540
     ccaaagttct ggctgtacct gtctggatta catccgcaag taaccgctga cgatgtccag       600
     aagattgcat ctcgttgcct caagttgtct gctcctgccg atgttgtacg tttagttccc       660
     aggggtgcgg atgtgaccaa attgtctttc gtgtcgtaca aacttggttg ataggtccca       720
     acaaaggacc gtgcgcttga tgcttccacc tggcccagtg gattactgtt ccgggaattc       780
     atcgatatgt caaaaaaccg gatttcgacc acggattgcg acatggtcac ggcgaattca       840
     aattgatgct ttttcctgtg gatggtggtg actctagggt tgtctccatg aacgaaaact       900
     gtattacgcg atctcatgtg gatggtgaaa accctagggt ttccaccaga ggcgagtatc       960
     ttaaccattc tccagtttct tccgcaccta atgcctctcc attgcagaat ctgaacgtcg      1020
     ataaccgcca tctctgggtg tattaccaga atgttcgagg attgcgcatc aaaattgaca      1080
     cattgttttg caataccatc gagtgcaact atgacgtcat tattctcatc gaaactggac      1140
     tcaacgaaag tatcaactca acacagctgt tcggggacaa ctacaatgtg tatcgctgcg      1200
     accgaagtgc gagaaacagc aataaatcta cttttggagg cgttctcatt gctgtccatc      1260
     gccgtttcaa cagcacgatt atcgatacta tcaacggcgt attcctggag caagtttgcg      1320
     cgtcggtagc agttggctcc aagcggcttc aattgtgcgc cgtttatatc ccccccgaca      1380
     aaagtaagga tgtgagtgca ttcaacgatc acgtggaatc catcggtgag ctatgtagct      1440
     tatgctctgt ccacgatcat gtactggtat gtggggatta taatcaaccg aaattactat      1500
     ggactcgaaa tgacgacgaa ctacgaccag cgaactctat cacactgacg accactagta      1560
     cggtgctgat cgacggtatg gattttttga atctttgtca agcgaatact gaacgcaact      1620
     atttgggacg cacacttgac ctagtattcg gatcaccgga cttgttaccc gtggttttgg      1680
     tccccgcttc accgcttgtt cctgtagatc ttcatcaccc gccgctcgag atatctctac      1740
     cgtcaatcaa cgtttctctg aacgactcaa ctggcggaaa cgtgaccagc gatttatcat      1800
     tagatttcaa caagattgac tttgacgccc tttcagtttt tctcgccgag ctggactgga      1860
     gcaacatttt ggctgagtta aacgccgatg aaatggctga atcgttttgt accattttag      1920
     taaactggat gaacacgaac gtaccgatcc gtcgccctac tccttcacct gcgtggagca      1980
     caccgttgct aagaacattg aagcgtaaac ggaacgcact ccaacgcaga ttgcgtcgtg      2040
     atcattgctc tgataataag cgtctctttc accaagcatg taacgaatat cgtaacctcg      2100
     attcatcgtt gtacaagtcg tatgtcttgc gtatgcaatc taacttacgg cgtaacccaa      2160
     aaagtttctg gaacttcgtt aattccaaat ggaagagtac gcccattcct acgagtgtgt      2220
     atcttgacgg tgtggaagct tctaattcaa cggaaaaatg cgaacttttt gcggctcatt      2280
     tctcatccgt gttttctact gaatctgtca cgccttctga ggtggatgct gcaattacgg      2340
     acgtaccaag caacctgttg gatttggata cattccgcat tacaccgaat atgattacgg      2400
     aagctgccaa aaagttgaaa tgctctttct cgccgggccc tgacggaatc cctactgctg      2460
     tgttttgtcg ttgtactgat gcgttagctg aaccactgtg caaaatattc aaccaatcgt      2520
     ttgacgatgc acgttttcct aggatttgga agcagtcgtt catggttcca gttcacaaaa      2580
     agggcgataa gcgtgatgtt aagaattatc gaggaattac taatctctct gccgcatcaa      2640
     aattgtttga aatgatcatc agtcacgtta ttctagagca ggccaaatgc tacatttctg      2700
     ccgatcaaca tggctttatg ccggggcgtt cggtaaccac gaacttgcta gacttcacca      2760
     cgacctgttt tgaacagttg gagaacggag cccaaatcga cgttatttac actgacctca      2820
     aagcggcatt cgactccatt aaccacgata tcctactggc aaagcttgcc aagcttggtg      2880
     cttcgagtcg gttatcatca tggttttcct cctacctgag agaaagatcg cttcgcgtaa      2940
     agctcgattc aaacacttct tcgtgcttca tgagctcatc cggagttcct caaggaagca      3000
     acctgggtcc gctgcttttc cttctattct tcaacgatgt gatggttctt ctgggatccg      3060
     gctgtggact ttcctatgct gacgatttga aattgtacgc caccatacac tccatcgatg      3120
     attgctcccg actacagtct atattggata tatttgttga ttggtgtcat cgtaacaaac      3180
     taactgtaag tgttcctaaa tgtatggtga tgtcctactt ccgcactact aggccactca      3240
     tccaagacta cgtcatcgat ggttcggttc taaatagaac ggatgaattc aacgatttgg      3300
     gtgtgttgat ggatcctaag ttgacattca acctacatcg ctcgaatgta attgccaaag      3360
     caaatcgcca gcttggattt atatctaaga tttcccgaga cttcacagac ccgtattgcc      3420
     taaaagcact ctattgctcc ttagtacggc caattttgga atgtgctgct ttggtgtggg      3480
     ctccccatca gctatcgtgg agtcttagaa tggaaagcgt ccaacgaaga ttcattcgtg      3540
     tggcattaag gaacctaccc tggcgtgatc cacggaacct gccaccatat gctaatcgat      3600
     gtaaactgct tgatttggac tctctagacc ggcggcgcaa gactcaacaa gctgctttta      3660
     tcgcgaaact actgaacgga gaagtggact gttccagact tcttgctgtt ttgaatattc      3720
     gtgtagctcc aagaatgtta cgcggcactg ctttactcca accaaggttc catcgaacag      3780
     ctttcggtta ccacgagcct atgactgaaa tgatccgcat cttctctagt gttgaaggct      3840
     tacacgagtt tggtgaatct tccctgcgat ttacgtcacg catcaggcgt caaaacgatt      3900
     tttagttaag tcccaatttc atgtagacaa tagtcagatg aaaataaatc aataataata      3960
     ataataataa taataa                                                      3976
//
ID   CR1-127_AAe repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-127_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4561
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1215-1215 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           721..1575
FT                 /product="CR1-127_AAe_1p"
FT                 /translation="MEICNSCAVSMTSSEVVCSGFCKANFHYKCVHLSESL
FT                 YKDICGNASVFWLCKGCCEIMKSARFKNAMTSTHAASLELRDAYQKVVEDL
FT                 KAEIKNSLLAELKQEIQGGFNKLSPAILSPVPRRFQFRDRNTPKRTRDEES
FT                 AQSSEQPSKIFCGTGQSAGSTSEGLAANADDKFWVYLTKISPEVSESDVQC
FT                 LAQDRLQTADVVVKSLVPRGKPLSMLSFVSFKVGVHKDLKSKAMDPATWPE
FT                 GIQFREFIDHDSNVRNFWRPALRLDPGATSSIVMQPQIALQMST"
FT   CDS           1482..4490
FT                 /product="CR1-127_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="CSEFLETSAALRSGSNFFDSNAATNRSSDVYVEEHHS
FT                 ALRSRPSCSANSSPNYLTLYYQNVRGIRTKTNELFLRLSSCDYDIVVLTET
FT                 WLHSNISNSELATGYCIFRCDRSSASSDLQRGGGVLIAVKASLNCKSVALQ
FT                 NCENLEQAVVCIELQKSSIYVCCIYLRPNSQVTLYSAHFSAIQCICEGMSE
FT                 ADTIVVVGDYNLPRLSWEIDDDINALLPSNASSEQEVVLVETMVASGLHQI
FT                 NSLQNTNGRILDLAFVNEPGDVELIKPPAPLLGIDNHHMPFLLRINAEDYQ
FT                 LQYVMDSNQTYDYDFRHCNFADLDTAISSIDWTTLFHGKTTDETVRMFYDT
FT                 LNGILSENVPRRRRRCQPFKHPWWTSELQNLRNVLRKSRRRYFRTRTVVDY
FT                 DNLRSIENRYNECQTEAFRAYISRLETTAKQDPSSFWNFIRNRKSSNRIPA
FT                 EMTHNNCTANSPETLADMFADCFENVYRNSSPPFIPDNLRQSPVFDINFPL
FT                 LEFNQHDVSSALNELDISKGPGTDNLPPVFLKECSASLQLPLCIIFNRSLR
FT                 DGTFPQPWKVASISPIFKSGSNQIAENYRGVSILCCVAKVFESLVHNALYA
FT                 AAQPLISDSQHGFVKKRSTTTNLMLFTDFVSTALENRQQVDAIYFDFSKAF
FT                 DRVPHDLAVAKLNHLGFPRWITDWLHSYLTNREAFVKVNGAKSRNFAITSG
FT                 VPQGSVLGPLIFVLFVNDLCFRLKSPKVLFADDLKIYRTISSLLDCCAIQS
FT                 DINEIQLWCVENGMELNTKKCKQISFTRRQSRIDFEYLVGPDILERVESIR
FT                 DLGVIIDYKLQFNEHISIATAKGFAALGFIRRSTKHFQDIYALKSLYCALV
FT                 RSVLEYAVCVWSPHHTTQIIRMERVQRSFVRYALRQLPWANPTDLPDYRSR
FT                 CNLIALETLSARRTKLQRLLVFDLIVGNVNCPSLLENVSLYAPSRQLRERN
FT                 LLFVRRHRTSYGFHNPLDKCFRAFNNVSVVFDFNISKFVFKNRIRNLE"
XX
SQ   Sequence 4561 BP; 1227 A; 1101 C; 967 G; 1264 T; 2 other;
     ctggcaaccc tgcctgttat tagtcgtgct cttccgtcgc tccaacaatt tttgcgtcaa        60
     tcwcatcgaa accgccaccc gaaatcgctt gaagccgcat caagtcgccc gcaaccgctc       120
     aaacmtcctc ccacagcagt ttaaagcagc gttcagtcag gtaggattag tgaatccaag       180
     ttattccgag ctggctagag cgtggtttga gaaaaactgc ccaccgccat tgcccaaata       240
     aattatctcc cacctcgcca ctctccacct gttctgaccc gctactctgt gtacaaacat       300
     cgctcgtcac aacatcaact gccatcgttt gccgagcata atacctcctc cgaaaaacgt       360
     catatttgca ttaagcaccc tgctgtaacc aagatcaagc caatacacta ctcctgatct       420
     tgcccatctt ctcactcaac aatccgaata gaccaccgga gtcccaccag aaataatccg       480
     tggtagttca tcggttccat tgatcggatc tcatcgtagc cattcattca acgatcgacg       540
     aaggtaaaca aacattgtgc cgtcaaccat tccaagaacc gacatttgtg tgagtgcagt       600
     cattttcgca tctgtccctg gcagtgttgc cagtttagcg gctaacatcg ataacgctgt       660
     aacgcttgag tgacgcttga aattcgatta cgttttttgt ttaaatcgac ggttgacatt       720
     atggaaattt gcaacagctg cgcagtaagc atgacctcgt ctgaagtggt gtgcagtggc       780
     ttctgtaaag caaatttcca ttacaaatgc gtccacttgt cggagtcgtt atataaggat       840
     atttgcggaa atgcttctgt cttctggctt tgcaagggat gttgcgaaat tatgaaaagt       900
     gctcgtttca agaatgctat gacatcaacg catgcagctt ctctagaact tcgagatgca       960
     taccagaagg tggttgaaga tttgaaggcg gagattaaaa atagcctttt ggccgagttg      1020
     aaacaagaga tccaaggagg attcaacaaa ttgtctcctg ctattctttc accagttcca      1080
     cgtcgtttcc agttcaggga tcgtaacaca cccaagcgaa ctcgtgatga agaatccgca      1140
     caatcttcgg agcaaccatc gaaaatattc tgcggcaccg gccaatcagc tgggagtaca      1200
     tcagaaggac tggcagcgaa tgctgacgat aagttctggg tgtatttgac aaaaatatca      1260
     cccgaagtgt ctgaaagtga tgttcagtgt cttgctcagg atcgactaca gactgccgac      1320
     gttgttgtga aatcgttggt acctagagga aaaccgcttt cgatgttgtc gtttgtatcc      1380
     ttcaaggttg gtgtacacaa ggatctcaaa tcaaaggcta tggatcctgc tacctggcct      1440
     gaagggatac aattccgtga gtttatcgac cacgatagta atgttcggaa tttttggaga      1500
     ccagcgctgc gcttagatcc gggagcaact tcttcgatag taatgcagcc acaaatcgct      1560
     cttcagatgt ctacgtagaa gaacatcatt ccgcactccg aagtcgtcca tcttgctcgg      1620
     caaactcatc tccgaattat ctgacgttgt attatcagaa cgtcagaggc atacgtacta      1680
     aaacaaacga gttgttcttg aggctttcgt catgcgacta tgatatcgtg gtcctcacag      1740
     aaacatggct gcactcaaat atatccaatt cggaactcgc tacaggctat tgcatatttc      1800
     gttgtgatcg gagctcggcc agcagtgacc ttcaacgtgg tggcggagtt ttaattgcgg      1860
     ttaaagcctc tctcaactgc aagtctgtgg cattgcaaaa ctgcgagaac ctcgaacagg      1920
     ctgttgtatg cattgaactc cagaagtcgt cgatctatgt atgttgcatt tatctacgtc      1980
     ccaactcgca agtcactctc tactctgcac acttctcagc gatccagtgc atatgtgaag      2040
     gcatgtcgga agcagatacg atcgtcgtcg tgggcgatta taatcttcct cgtctaagct      2100
     gggaaatcga tgacgatatt aacgcattgc tgccctctaa cgcatcatcc gaacaagaag      2160
     tcgtcctagt tgaaacgatg gtagcttcgg gattgcacca aatcaatagc ttgcaaaaca      2220
     cgaacggccg aatactcgat ttggcattcg tcaacgaacc aggtgatgta gagttaatca      2280
     aaccgccggc acctctcctc gggattgaca accaccatat gccgttcctt cttcgaatca      2340
     acgcagaaga ttatcaattg cagtacgtta tggattcgaa tcaaacatat gactacgatt      2400
     ttcgtcactg caacttcgcg gatctcgaca ccgccatttc ctccatcgat tggactacgc      2460
     tgtttcacgg taagactaca gatgagacgg tacgtatgtt ctatgatact ttgaatggga      2520
     ttctcagcga aaatgtaccg cgaagacgtc gtagatgcca accatttaag cacccttggt      2580
     ggacttccga gttacagaac ttacggaatg tcctccggaa gtctcgtagg cgttattttc      2640
     ggacaagaac ggttgttgat tatgacaatc tccgttcaat agaaaatcgg tataacgaat      2700
     gccaaacgga agcatttcgg gcctatattt cacgactgga gacgactgct aaacaagacc      2760
     cctcttcgtt ctggaacttt attcgtaacc gcaaaagctc aaatcggata ccagctgaga      2820
     tgacacacaa taattgtacc gctaactctc ctgaaacatt agctgacatg tttgcagatt      2880
     gcttcgaaaa cgtttaccgt aacagctcgc caccgtttat tcccgataac ctcaggcagt      2940
     ctcctgtgtt tgatataaac ttcccgctgt tagaatttaa tcaacacgat gtttcatcag      3000
     ccttgaatga acttgatatt tccaaaggac caggaaccga caatcttcct ccagtgttcc      3060
     taaaagaatg ctccgcatct ctgcaattgc ctctttgcat tattttcaac agatcgctcc      3120
     gtgacggtac ttttccgcag ccgtggaaag tagcttcaat aagtccgatt ttcaaatctg      3180
     gttccaatca gattgccgag aactaccgcg gcgtttccat tctgtgctgc gtggctaaag      3240
     tcttcgaaag cttagttcat aacgcgttgt atgcagctgc tcaaccgtta atttcagatt      3300
     cgcaacacgg gtttgttaaa aagcgatcaa ccactacgaa tctgatgttg ttcactgatt      3360
     tcgtatcgac ggccctcgag aacagacaac aagttgatgc catctatttc gacttctcca      3420
     aagctttcga cagagttcca catgatctcg ctgttgcgaa gctgaaccat ctgggatttc      3480
     cgcgctggat tactgattgg ctccattcat atctgacaaa ccgtgaggcg ttcgtcaaag      3540
     taaacggagc aaaatctcga aatttcgcta ttacatctgg tgtgcctcaa ggtagcgtcc      3600
     tcgggccact gattttcgtg ctgttcgtga atgatctctg cttccggctt aaatcaccca      3660
     aagtgctgtt tgccgacgat ctgaaaattt acagaactat ttcgtccctt ctcgactgct      3720
     gtgctattca atccgatatt aacgagattc aactgtggtg cgttgaaaat ggaatggagc      3780
     tgaacactaa gaagtgcaaa caaatttctt tcacccgacg ccagtcccga atcgactttg      3840
     aatatttggt gggcccagat atcttggagc gcgttgaatc catccgcgac cttggtgtca      3900
     taatcgatta taaactgcaa ttcaacgaac atatcagcat cgccactgcc aaaggattcg      3960
     ctgccctcgg atttattcga cgtagtacga aacattttca ggatatctac gctttgaagt      4020
     cgttgtactg tgctctagtt cgaagcgttc tggaatatgc cgtctgtgtg tggtctccac      4080
     atcatactac gcagatcatc cgaatggaaa gagttcaacg tagcttcgtt cggtacgctc      4140
     ttcgccagtt gccttgggca aatccaactg atctgccgga ttacagaagc cggtgtaacc      4200
     tcatcgcttt ggaaacgctc tctgccagac gtacaaaact acagagactg cttgtgttcg      4260
     atctgattgt aggaaatgtc aattgtccgt cactgttgga aaatgtgtcc ctgtatgccc      4320
     cgtctcgtca actacgtgaa cgtaacctgc tttttgttag acgccatagg acttcatacg      4380
     gttttcataa ccctctggat aaatgttttc gtgcgttcaa taatgtgagt gttgtgttcg      4440
     acttcaatat ttcaaagttt gtttttaaaa atagaataag gaacttagag taagatacag      4500
     tctggggaat ttatttttaa ttcaagacgg tgataaataa ataaataaat aaataaataa      4560
     a                                                                      4561
//
ID   CR1-12_AG   repbase;    DNA;    INV; 4541 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-12_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4541
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 16(7), 1389-1389 (2016).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..1257
FT                 /product="CR1-12_AG_1p"
FT                 /translation="MARICNACTMEIAEASISCCLCDSPFHQRCTSVPADL
FT                 FLRISEYKQLHWCCIGCNNVFMNPRTKFVKDAAMQSGFQAAITTVAESIKT
FT                 VMEPLTNEIKTGFARMSQLDLKTPRSSHPPAKIRRINPSKRLFSDVIKDNH
FT                 ALFTFGATSNQRNSQNNNTKRTDDVQRKTHAPPVITGTKKDIAAFPIKIVP
FT                 AHSAVQKCALYISRLSPDTTSDQIVQMVKQALSIDDATAYCLIRQGTNTAT
FT                 LSFLSFKVLVPLSLRDKALSPDTWPLGLSVREFIDYRTQQPSANFRIQPPM
FT                 GLSTPTTLPTVLNIRSPPLLDHTILSAHTPRTSPTPQTH"
FT   CDS           1092..4430
FT                 /product="CR1-12_AG_2p"
FT                 /translation="LPNSTAECKFSYTTANGSLHPYNFAYGAKYSVTATAG
FT                 SHNFIGTHSTHITNTANPLIFTGIQSTHIAHTYNHTNHPDTSQETKNTGAE
FT                 TTLVNNNCTYQTIVFPTTNNIFSTEAVLDERRTQLNDRETKTNHRQRTDTT
FT                 LTQSHGYHVNPTGVACRNNTDELLFLYQNVRGLKSKCNQVFDYVSTTHYDV
FT                 IILTETWLDSTIDSSELFPDNYTVYRTDRSSKNSKKSTGGGVLIAVASHLR
FT                 TILCPTQDTVEQLWVRVYGNKRTFITGVVYIPPDLVNNTTTMQTICSTIDN
FT                 IACATTDTFLLFGDFNFPNLSWNTDDSNVPALRINYENSRITDNCRSLLDC
FT                 IYSNGLSQINFIPNASDNILDLIIVSDEILHYCAPPVVSPFPMVAVDVHHP
FT                 PVELHLTGAGNTARSWRSTAPNRESGTRNYRRTNFIRLAELLQSTDWSFLE
FT                 GNPDVNSALELFNTTLLALISDCCPLMPPRRSPPWSDARLRRLKQNKASCF
FT                 RFYSTNGTQHSKLRFIAAHNVYRSYNRQLHTRYLIRVKFSLIRHPTRFWRY
FT                 VESKRGNSSLPDVLTYNNVSTSSKEGMCNLFADRFKDCFTTDDASLSLEAA
FT                 LNNVPRDVVDIDVRDIIISVDTVLRALQQVKTSYNPGPDGIPTAILAKCRE
FT                 FLAEPLSQIYQLSFAQSTVPTAWKSSVMFPVYKKGDKNSAENYRGITTLPS
FT                 CAKVFEIVIQNSLMYHCRSYISTRQHGFFPRRSVTTNLVEFVSNCHAAFTS
FT                 GAQMDAVYTDLKAAFDRVNHRLLLAKLARIGLSTPLVNWFRSYISERSYYV
FT                 QIDGVSSKVFESSSGVPQGSNLGPLLFSLFINDVTLAITEADCLLYADDVR
FT                 LFRIVRNTSDSLSLQRSIDVFSDWCINNDLLISVDKCTSMSFFRIASPIRY
FT                 IYSISGTQLPRCNTVRDLGVTLDRKLDFRQHYCDILDKANKMLGFIRRHSR
FT                 ELNDPHCLLTLYKSYVRSILEFSSTVWCPFSSVWSNRIEAVQKRVTRIVLH
FT                 FTPWRNVTPRPSYHTRCLLFGLDTLARRRDNAQCTFLSKLIVGEIDSPELL
FT                 ARVNINVPPRVFRNYRLXRTDLTRRAYSENDPMTAMARKFNQRYISFDWHL
FT                 PTRFC"
XX
SQ   Sequence 4541 BP; 1231 A; 1149 C; 870 G; 1288 T; 3 other;
     gacgtttgac gtttaacgta aaagtcgctt tcgcatatcg ctcagtatct tttcttgaaa        60
     atcgcgctgt ttatctcact atttttcggt ttctgtataa tcacagtatt ttagaacacc       120
     gttcgtattt cgtgcaatag tgcgtttatc tctgtgaccc aaaaactcgc gcatatttcg       180
     catttcggat cgcgtctgag ttcacgcgtc ctgaccgcca tcgctcttgt tgctgcaacg       240
     acaacctgca ccgtttcccg tagaatggcc cgtatttgca acgcctgcac tatggaaatt       300
     gcggaggcat ctatcagctg ctgcctgtgc gactccccat ttcatcagcg ctgcacttcg       360
     gttcccgctg atctgttcct gcgcatttcg gaatataaac aattacactg gtgctgtatt       420
     ggctgcaaca acgtcttcat gaatccgcgc accaagttcg taaaagacgc agccatgcaa       480
     tctgggttcc aggcggcaat aacgacagta gccgaaagca tcaagaccgt tatggagcca       540
     ttgactaacg aaattaaaac tgggtttgca cggatgagcc aacttgacct aaaaactcca       600
     cgtagcagtc accctcccgc aaaaattcgt cgcataaatc catccaaacg tttgttttcc       660
     gatgtcatta aggacaatca cgcattgttt acattcggtg ctacgagcaa tcaaagaaat       720
     agccaaaaca acaatacgaa gcgaactgac gatgttcaac gcaaaactca tgcaccacct       780
     gtgataactg gcacaaaaaa ggatatagca gcatttccaa tcaaaatagt acccgctcat       840
     tccgcggtgc aaaaatgcgc gttgtatatt tcccggctct ctcccgatac aaccagtgac       900
     caaattgtac aaatggtcaa acaagcttta tccattgacg atgctacagc atactgtctt       960
     attcgccagg gtacaaatac ggctacactc tcattcctgt cgtttaaagt gttagtgcct      1020
     ttatcactac gtgacaaggc tctttcccct gacacctggc ctcttggcct atcagtacgt      1080
     gaattcattg actaccgaac tcaacagccg agtgcaaatt ttcgtataca accgccaatg      1140
     ggtctctcca cccctacaac tttgcctacg gtgctaaata ttcggtcacc gccactgctg      1200
     gatcacacaa ttttatcggc acacactcca cgcacatcac caacaccgca aacccactaa      1260
     tattcaccgg tattcagtcc acgcacatcg cgcacactta caatcacaca aatcatcctg      1320
     acacgtctca agaaacgaag aacaccggcg ctgaaacaac gttagtaaat aataattgca      1380
     cttaccagac gattgttttt cctacaacaa acaatatttt ttcgactgag gcagtgcttg      1440
     acgaaaggcg cacgcaactt aatgatcgtg aaaccaaaac aaaccatcgc caaagaacgg      1500
     acactacact cacacaatcg cacggctatc atgtcaatcc tacaggggtc gcctgccgta      1560
     ataatactga cgaattattg ttcctgtacc aaaacgttag aggattgaaa tctaaatgca      1620
     atcaagtatt tgactatgtt tctacaaccc actatgacgt tattatcctg actgaaacat      1680
     ggttggattc aacgattgat tcctcggaat tgttcccgga taattataca gtgtatagaa      1740
     cagaccgcag cagcaaaaat agtaaaaaat caaccggtgg cggggttctc attgccgttg      1800
     cttcacacct acgtacaata ctttgtccta cacaggatac cgttgagcaa ctctgggtaa      1860
     gagtttatgg taataaacgt acttttatca cgggtgtagt gtacattcct ccagatttag      1920
     taaacaacac tactaccatg caaactatct gctccaccat agataatatt gcttgtgcaa      1980
     ccaccgatac gtttctccta ttcggggact ttaacttccc caatctttcc tggaacaccg      2040
     atgattctaa cgttcctgca ctgcgaatca attatgagaa ttcacgaatt acggacaact      2100
     gccgctcttt gcttgactgc atctatagta atgggctttc tcagatcaac tttataccta      2160
     atgcatcgga taacattctc gatctcataa ttgtctctga cgagatccta cattattgtg      2220
     ccccaccggt ggtgtcncct ttccctatgg ttgccgttga tgttcatcat cctcctgttg      2280
     aactacactt aactggtgct ggcaatacag ctcgttcctg gcgttctacc gcaccaaacc      2340
     gtgagtccgg cacacgtaac tacaggcgaa ctaactttat ccgtctagct gaactgcttc      2400
     aatctactga ctggtctttc ctggaaggta atccggatgt taactcagca ttggaactat      2460
     ttaacacaac actactggcg cttatatctg attgctgtcc tctaatgcca ccgcgtcgca      2520
     gtccaccatg gtctgatgca cgtttacgcc gtctaaagca aaacaaagcg tcatgctttc      2580
     gcttttacag tacaaatggt acacaacact ccaagttaag gttcattgct gcccataatg      2640
     tatatagaag ctataacaga caacttcata ctcgttatct cattcgagtg aaattctcgc      2700
     tcatcagaca cccaacacga ttctggaggt atgttgaatc aaaacgcggt aacagctcgc      2760
     tccccgatgt tctcacatat aacaacgtct ccacaagcag taaggaaggc atgtgcaact      2820
     tatttgctga tcgtttcaag gactgcttta ctacggatga tgcaagctta tcattagaag      2880
     cagctttaaa taatgtgccc cgtgatgttg ttgacattga cgtacgcgat attattatct      2940
     cggtagatac tgtactacgt gctctgcagc aggtcaaaac ctcatacaac cctggacccg      3000
     atggtattcc tacggcaatc cttgccaaat gccgcgaatt tttagcagag cctctgtctc      3060
     aaatctacca actctctttt gcacaaagta ctgtacccac ggcctggaaa tcctctgtga      3120
     tgtttccggt gtacaaaaaa ggggataaaa actctgctga gaactaccgc ggtataacca      3180
     ccttgccttc ttgtgccaag gtgtttgaga tcgtcataca aaactcgcta atgtatcact      3240
     gtcgttctta tatttctaca cgccagcatg gtttctttcc tcgacgcagt gttaccacaa      3300
     acctggtgga attcgtctcc aactgccacg cagcctttac ttccggagct cagatggatg      3360
     cagtatacac tgatcttaag gctgcgtttg atcgtgtgaa ccatcgcttg ctgttggcta      3420
     agctcgcccg gatcggtctc tctactccgc tggtgaattg gttcaggtcc tatatctctg      3480
     aacgtagcta ctacgtacaa atcgatggtg tctcctctaa ggttttcgag agttcatctg      3540
     gcgtccctca gggcagcaac ttgggaccac tgctgttctc gctttttatt aacgacgtca      3600
     cactggccat tacggaagca gattgtctgc tttatgcgga tgatgttagg ctgtttcgta      3660
     tcgtacggaa cacttccgac tctctttcnc tgcaaagatc gattgatgtt ttctctgact      3720
     ggtgtatcaa caacgacctg ctaatttctg ttgataagtg tacgtcaatg tctttcttta      3780
     gaatagctag tccgataagg tatatctata gcatatcagg gacacaacta ccgcggtgca      3840
     atacggtcag ggatttagga gtcaccctgg atcgcaaact agatttccga caacattact      3900
     gtgatatttt agacaaagct aacaaaatgc taggatttat tcgtcgacat tcgagagaac      3960
     tcaatgaccc acactgcctg ttaactctgt ataagtccta tgttcgttcc atcctcgagt      4020
     ttagttctac agtttggtgt ccgttctcta gtgtttggtc caatagaata gaagctgtcc      4080
     aaaagagagt tactcgtatt gtcctacact tcactccgtg gcgtaatgta acccctcgtc      4140
     catcgtatca tactcgttgt ttgttgtttg gtctggacac acttgctagg agacgtgata      4200
     atgcccaatg tacgtttttg tccaaactta ttgtcggtga gatagattcg ccagaactac      4260
     tggctagagt caacataaat gtccctccta gagtgttccg taactacaga ctantaagaa      4320
     ctgaccttac aagacgtgca tacagcgaga acgacccaat gactgcgatg gcccgtaaat      4380
     ttaatcagcg ttacatttca tttgactggc acctacctac tagattctgt tgatcggttt      4440
     tgtcattgta cactgcgtta gttatttaag ttttagtttt aattcagtga taaggccgct      4500
     tgtttggcca atcacttaat acaataaaca atacaataca a                          4541
//
ID   CR1-12_CQ   repbase;    DNA;    INV; 3978 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-12_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3978
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 14-14 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..684
FT                 /product="CR1-12_CQ_1p"
FT                 /translation="MIKHTKEIPSLSAAASSRSAPVVSHPYPAHGDRAGGF
FT                 RPGFSGKYSCCPSNSPLDKSXVSSESSSRQPLQNSILXIPSARSKSVRNFS
FT                 DYGGALAPPTTLQLSGPAIVSNLIVSAEVSRRISVAPNSIETASPGRFLLS
FT                 TVGALNSPAAADTIAEPAISKTQLAGHLSRPGDVCGYGARVPKSSARASTH
FT                 VAEPFLSLTITRIPAPTEDIHPLALPRYFTRDA"
FT   CDS           531..3803
FT                 /product="CR1-12_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CVRVRGXGSQIFSTGKYSRCGTFSLVDDHPHSSSDRR
FT                 HSPARAAALLHSGRLIQSPVEAPERPVAVLPHVNAQQSRPEPAYGHREGVF
FT                 QRQLSGEYPVLEHMSRADDLLVSSTSLRTTSAAEAPNRLDTQRALSFYYQN
FT                 VRGLRTKIDDLFLAVIDCDYDVIVLTETWLDDEIFSPQLFGTGFVVYRNDR
FT                 DTVRTGKKTGGGICIAVSKKFDSTEFPVPTDASSLEQLWVVINGVADQKLY
FT                 VGSVYISPDLARNSAVIESHFNSASAVAEAMRPNDLHLLLGDYNQPKITWA
FT                 KFNSRHAHPSSSSASYPLSSSTLLDGMALLGMKQLNDVSNNLNRTLDLVLI
FT                 DDDSVNYCSVAEAPEALLRIDPPHPPLEVTVSLRVPVPFIDEPDTRSYNFY
FT                 KADFPALNRALLGVNWNALNETQNVDEAVAFFNSTLKTAFRDHVPTRAPPR
FT                 KPPWSNDRMKKLKRRRAAALRKYSARRNPVTHRAFRLASKRYTHYKRHRYG
FT                 IHVRRTQENLKRNPKLFWSFVNEKRKETGLPAKMFLGEANSTSTEETCNLF
FT                 AQHFLSVFRPSPATPDQVRSALRAVPADALHLSAVPITEEDVRMAIAKLKS
FT                 SSSAGPDGIPSIVLKSCAVAVTKPLQRIFNLSIQSETFPNCWKSSYMFPIF
FT                 KKGDKRDVSNYRGITSLCAGSKLMEIIVNTLLINATKGYISTAQHGFFSGR
FT                 STSTNLVDFISFCKRNMEGGGQVDVVYTDLKAAFDRIDHRILLAKLDHLGV
FT                 SCKVVNWVASYLTGRTLSVKIGASESVPFCMTSGVPQGSNIGPSFFSVYYN
FT                 DVTFVLPPGSRILYADDLKIYQPIHNVDDCRVLQQLIESFTQWCDSNLLSV
FT                 SFSKCSIISFTRKKHPICWPYTIGDQPLERATVVKDLGILLDEMLSLSAHY
FT                 NAVISKANRNLGFVFRIANEFRDPACLRALYYALVRSHLETAVVAWSPHTD
FT                 EWVTRIESVQRKFTRFALRFHSWPDQVVAPSYEQRCEALGMETLSKRRQFL
FT                 RAAFVGKLLLGAIDAPNILARINFNVIPRPLRTWNALRLDFHRTQYGQQEP
FT                 IRAMCDVFNDFDDLFDYSMSVDSFISNLRRTIFV"
XX
SQ   Sequence 3978 BP; 963 A; 1125 C; 907 G; 978 T; 5 other;
     gtsggaatag gatgcatgat caagcacact aaggaaatcc cctctctctc cgctgcggct        60
     tcaagtcgct ccgcgcctgt tgttagtcat ccttacccgg cgcacggaga tcgagctggg       120
     ggtttccgac ctggcttctc aggcaagtat tcatgttgtc ccagtaattc cccacttgat       180
     aaaagttkgg tttccagcga atcatcctca cgccagccac tgcagaactc aatcctakgg       240
     attccwtcag cccggtcgaa gtctgtacgc aacttttcgg attacggggg agcccttgcc       300
     ccccctacca cactccagct atctggcccg gctattgtca gcaaccttat cgtcagcgcg       360
     gaagtctcca gacgcatctc tgtcgcaccg aattccatcg agactgcttc tccaggacgc       420
     ttcttgctaa gtaccgtggg agccctcaac tctcccgccg cagccgatac catcgcagag       480
     ccagccatat cgaagaccca acttgctggc catttaagtc gtcctggtga tgtgtgcggg       540
     tacggggcgm gggttcccaa atcttcagca cgggcaagta ctcacgttgc ggaacctttt       600
     ctctcgttga cgatcacccg cattccagct ccgaccgaag acattcaccc gctcgcgctg       660
     ccgcgctact tcactcggga cgcctgatac aaagtcctgt ggaagccccc gaacgacccg       720
     tcgcagtcct gccgcatgtc aacgctcagc aaagccgtcc cgaacctgcg tacggccatc       780
     gtgagggggt cttccaacgg caactctcag gcgagtaccc cgttcttgaa catatgtccc       840
     gcgctgatga tctgttggtt tccagtacct ccctgaggac tacatcagcg gccgaagctc       900
     ctaatcggtt ggacacgcag cgcgctctga gcttctacta tcaaaacgta aggggacttc       960
     gtacaaaaat cgacgatctg ttcctggctg tgatcgattg cgattatgat gtcatcgttc      1020
     ttacggagac ctggctagac gatgaaatct tctcgcccca gttgttcggg actggctttg      1080
     tagtctaccg caacgatcga gacactgttc gcactggaaa gaaaactggc ggtggaatct      1140
     gcatcgctgt ctcgaaaaag tttgattcaa cggaatttcc tgttccgacg gatgccagca      1200
     gcctcgaaca gctttgggtt gtcatcaatg gcgtcgcaga tcagaagctg tacgtcggct      1260
     ccgtctacat cagcccggat cttgccagaa attcagcagt tattgagtcg cactttaact      1320
     cggcctccgc tgtggccgaa gcgatgcgtc cgaacgattt gcacctgctt ctcggcgatt      1380
     acaaccaacc taaaataact tgggcaaaat tcaactcgag acacgcgcac cccagttctt      1440
     cgtctgcatc ttatccgctt tccagttcta cactactcga cggcatggca ctgcttggaa      1500
     tgaaacagtt gaatgatgtt agcaataact taaatcgcac acttgatttg gtgctcatag      1560
     atgacgattc tgtaaactac tgctctgtcg ctgaggcccc ggaagcgctg cttagaatcg      1620
     acccgccaca tcccccactg gaggtaactg tttcgctgag ggtgccagtg ccgttcatcg      1680
     acgaacctga tacccgatca tacaacttct ataaggcgga ttttcccgcc ctcaatcgcg      1740
     cacttctcgg agtaaactgg aatgccctca atgaaacgca gaatgtggat gaagctgtgg      1800
     cattcttcaa ctctacactg aaaaccgcct tcagagatca cgttccaact cgtgcacccc      1860
     ctcggaaacc tccctggtcc aatgatcgca tgaaaaaact gaaacgacgg cgtgccgctg      1920
     ctttgaggaa gtattcagct agacggaatc ctgtaaccca tcgcgccttc cgtctcgcca      1980
     gcaaacgtta cacgcactac aaaagacacc gttatggaat ccatgttcgc cgtactcaag      2040
     agaatctgaa acgtaatcca aaacttttct ggtcttttgt gaacgagaaa cgcaaagaaa      2100
     ccgggctccc agctaaaatg ttcctcggcg aagctaactc tacttccacg gaggagacgt      2160
     gcaacttgtt cgctcagcac tttttgagcg tatttcgtcc atcgcctgca actccggatc      2220
     aagtgcgcag cgcactccgc gctgtccccg cagacgcact tcacctgagc gctgtaccaa      2280
     tcacggagga ggacgtacga atggcgatcg caaagctgaa gtcctcatcg tctgccggac      2340
     ctgacggaat cccatcaatt gtgctgaaat cctgtgctgt cgccgtcaca aaaccgttgc      2400
     agcgaatttt caacctgtcc atacaatccg aaaccttccc gaattgctgg aaatcatcgt      2460
     acatgttccc aatcttcaag aaaggggata agcgggacgt ttccaattac cggggaataa      2520
     catctctttg tgccggttcc aaactgatgg aaatcatcgt aaacacgctc ctgataaacg      2580
     caacgaaggg ttacatctca acagcacagc acgggttctt ttcgggacgc tcgacaagta      2640
     caaacttagt cgacttcatc tcattctgca aacgaaacat ggaaggcgga ggacaagtgg      2700
     atgttgttta caccgacctt aaggctgcgt tcgacaggat cgaccaccgc atcttactcg      2760
     ccaagctcga ccacctcggc gtttcatgca aagtcgtcaa ctgggttgca tcgtacctga      2820
     ctggcagaac actctcggtc aaaatcggtg cttccgaatc agtgccgttc tgtatgacgt      2880
     ctggcgttcc tcaagggagt aatataggac caagcttctt ctctgtctac tacaacgacg      2940
     ttacctttgt gctcccaccc ggaagcagaa ttctctacgc cgacgaccta aagatttacc      3000
     agccaattca caacgtagac gactgccggg tgctccaaca gctgattgag tcttttactc      3060
     agtggtgtga ttcaaatttg ttgtcagtaa gtttctctaa atgttctatt atctctttca      3120
     cacgcaaaaa acaccccatc tgctggcctt acaccatcgg agaccaaccg ctggagaggg      3180
     cgaccgtcgt taaggatctt ggcatactcc tcgatgaaat gctcagcctc tccgcccact      3240
     acaacgccgt tatctccaaa gcaaaccgca atctcgggtt cgtttttcgg atcgcaaacg      3300
     agtttcgtga tcctgcctgc ctacgagctc tttactacgc actcgttcgt tctcacctcg      3360
     agactgctgt ggtggcttgg agcccgcaca ctgatgaatg ggtgactaga atcgagtcgg      3420
     tacagaggaa gttcacaaga ttcgcattgc gcttccactc atggcctgat caagttgtag      3480
     cgccatccta cgaacaacgc tgcgaggctc tagggatgga aacactctct aagagaaggc      3540
     agttcttacg ggcggctttc gtggggaaac tgttattagg tgccatcgac gctcctaata      3600
     tcctcgccag gatcaacttc aacgtcatcc cgcggccgct cagaacgtgg aacgcactcc      3660
     gcctagactt tcatcgtact caatatggac agcaggaacc tatccgggcg atgtgtgacg      3720
     ttttcaatga ttttgacgat ttatttgatt actcgatgtc tgtagattcc tttatttcta      3780
     acttacgccg tactattttt gtttagatct aagtttatat tgtatctcgt gaaatgtatt      3840
     gaccatgttt aaaagacggt gggttttatg cctattcgag agtggcgaat ttagcgatcc      3900
     aactcgaacg ggcttttacc acccagtcca ttaagacaga taaatgtcgg atggacaata      3960
     aaataaaaat aacaaata                                                    3978
//
ID   CR1-12_DTa  repbase;    DNA;    INV; 4504 BP.
XX
AC   .
XX
DT   07-DEC-2012 (Rel. 19.10, Created)
DT   07-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4504
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2823-2823 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           485..1540
FT                 /product="CR1-12_DTa_1p"
FT                 /translation="LVTMSACCVVGCQFTGKITSRQPIVNCWLCENIAHAK
FT                 CVDFGHSAAQIADRTRSNANLDWTCPTCLHIKIDIRSFMRQMELEFQALRA
FT                 GFTDLLSRFNVFDSNFKGRILLNQISLNINRNPTLPNISLHVPDLSSNLSL
FT                 PSPTASYMSCDEDDPNGSESSTTDVRMQSRPDSLNVASPESLGPTNRSPAV
FT                 ATSGALPHLVLPLDNTLVPPPVPLSSMIPRKNSNSPAPSSPVPLTLMVPRK
FT                 SIFVSRLNAALTVNDVMHHIVSKLSLPNQKGIDITKFNFKQIRDYSSFKIL
FT                 VPDELFSKLLDPNFWPANIIVHEYIKKIVRXPSLPCRSPALLQIQKTKFHN
FT                 PLSKCTGAS"
FT   CDS           1446..4328
FT                 /product="CR1-12_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="FASHHFLVGAQLCFKFKKLNFIIHYQNVRGLLSKLST
FT                 LYKNSSIFEANVIVFTETWLNPSVHDSEILSNNFFVYRNDRHTRRGGGVLI
FT                 GVKSDLTSELVDISGSSGIEFICVKLSFPKNKIFLTCSYIPPNSEFNVYIL
FT                 HLSAIQSISLLLAETDQLIVLGDFNLPNISWLESNDSLAMITRMQHDFVDG
FT                 LVELSLQQVNWIPNHIGRLLDLIFVFDGIDVEVSRIPPLSLPEDYHHPTLQ
FT                 LCINGFFNAPRTAINVHPSLCFKKTDYAKLVESLSTINWSYLVDLPVDDAV
FT                 GYFYKVLYRLFDVHVPLSSLKNSYSSPWFTRQLSYLKNKKNRLFKRFKXSG
FT                 LLTDWAKYSSAKAEFVQHNSDCYQNYLSRCKRDFKSNPKLFYSFVNSKRKS
FT                 NCYPHSLFLNNNIASDDDDISNLFADFFQSTYTECNGVIDNDYPYPLPHLN
FT                 SIFKPVINVSDVLQSLDTLKLSFSPGPDKIPSCILRNCSSYLAFPLTLIFN
FT                 LSLSQGRFPSIWKESFIVPLFKKGNKSDISNYRGIAKLSAIPKLFEKIITC
FT                 QLQHHCRSIISPCQHGFTRRRSTSTNLLEFTSLITRGFLTHHQTDVIYTDF
FT                 SKAFDSVNHKLLIFKLSRLGFPPNLLDWILSYLSNRTQMVCFNNRISKIIN
FT                 VTSGVPQGSHLGPLLFGLMINDLPNVIKSSTVLMYADDVKLCLSMCLPSSF
FT                 NDLQLDLDCLYTWCMINMLNLNYSKCNFMTFYRCNPSLFSYSIGNNALERI
FT                 LSVQDLGVLFDHKLSFKDHISTISNKARSLLAFMKRWSKEFDDPYTTKLLY
FT                 VSLVRPSMEYCSCIWSPQISCYQNMLESVQKQFLLFALRGLHWDTGSRLPS
FT                 YLARLRLLDLPTLYHRRKCHGVMFLHKLINGDVDSPFLLSSLNWNVPCRTV
FT                 RRFRPLSLPICRSNYALHDPFRVLCDDYNSLCHVLLFDTPNATNYNKLMYF
FT                 LSSNNL"
XX
SQ   Sequence 4504 BP; 1165 A; 983 C; 748 G; 1602 T; 6 other;
     aagacagctg attctctctc tgttgtatac ggacgtgttt tacattcgct cccacattta        60
     ttcgcttagt gtcgaaattt tcgatttttt atattcccta agttttcatt ctcaactcgg       120
     ttgagcccgc cgtttgaatg caaattagtg atttgtgtta aaaccatcgt ctttataaag       180
     atattgaaaa atagttaacg acgcgagtgc attgtgcatt gttgttgttt tttatttaca       240
     ttgtcgtttt ggcgctctct cgcaccgttt gttctgctca tctcccaact tcagtcaccg       300
     gctctcattt tcgagttaac ggttctttgc tgatttggtc ttatcgcgct ctttctttcc       360
     tcttatcgcg ctctttcttt cctcgacgcc ctcatagcca cacagctgtt tgttggcact       420
     caactaaagc tttctgttta catttctcta cattctacat tctacatttt ttatcttact       480
     ttaacttgta acaatgtctg cttgctgtgt tgttggttgc caatttactg gcaaaatcac       540
     ttctcgtcag ccgattgtta attgctggtt atgtgagaac atcgcgcacg ctaaatgtgt       600
     tgactttggg catagtgcgg cccaaattgc ggatcgtact aggtctaatg ccaacctgga       660
     ctggacgtgc cctacatgcc tacatatcaa aattgatatt agatcattta tgaggcaaat       720
     ggagcttgag ttccaggcct tacgtgctgg atttacggac ttattaagtc ggtttaatgt       780
     tttcgactca aactttaaag gtcgtatcct tcttaatcaa atatctttaa atataaatcg       840
     taatcctaca ctgcctaata tttctctaca tgttccagat ctctcgagca acctctctct       900
     tcccagcccc actgcaagct atatgtcgtg cgatgaggac gatcccaatg ggagcgaatc       960
     atcaacgacc gatgtcagga tgcaatctcg gccagattcg ctgaacgtag cttcgcctga      1020
     gtctttaggg cctactaatc ggtcgccggc tgttgccact tcgggggccc tgccgcacct      1080
     cgtactgccc ctagataata cccttgtacc tcctcctgtt ccactttcta gcatgatccc      1140
     taggaagaac agtaatagcc cagctccctc ttctccggta ccactcactc tcatggtacc      1200
     taggaagtct atttttgtgt caagattgaa tgcagcactc acagtcaacg acgtgatgca      1260
     tcatattgtc tcgaaactct cccttcccaa tcaaaaaggt attgacatca ctaaatttaa      1320
     ttttaaacaa ataagagatt attcttcatt taaaatactt gttccggatg aactgttctc      1380
     caaacttctt gacccwaatt tttggcctgc taatataatt gttcacgaat atataaaaaa      1440
     aatagttcgc ktcccatcac ttccttgtcg gagcccagct ctgcttcaaa ttcaaaaaac      1500
     taaatttcat aatccactat caaaatgtac gggggcttct tagtaaactc tcaacgcttt      1560
     ataaaaacag ctcaattttt gaagccaatg ttattgtatt cactgagacc tggcttaacc      1620
     catctgtaca cgatagtgag attttgtcaa ataacttttt tgtttatcgg aatgatcgtc      1680
     atacccgtcg aggtggaggc gttcttattg gagtcaaatc cgatttaact tccgagcttg      1740
     ttgatatttc tggttcatca ggtattgaat ttatttgtgt aaaattatct ttcccwaaaa      1800
     ataaaatttt tttaacttgc tcctatatac cccctaactc cgaatttaac gtgtatatat      1860
     tgcacctgtc cgccatacag tctatctcct tgttgcttgc tgaaactgac caactcattg      1920
     tgctcggtga ctttaatctt cccaatattt cttggttgga gagtaatgac tcattggcaa      1980
     tgattactag gatgcaacat gactttgttg atggtcttgt tgaactatcc ttgcagcaag      2040
     ttaactggat tcccaatcat attggtcgtc tccttgactt aatcttcgtc tttgatggta      2100
     tcgatgttga agttagtcga attccgccac tatctctacc tgaagattat catcatccta      2160
     cccttcagct ctgtataaat ggatttttta atgctcccag gactgcaata aacgtacatc      2220
     ctagtttgtg ttttaaaaag actgactatg ctaaactagt tgaatcttta tcgacaatta      2280
     attggtccta tcttgttgac cttcctgttg atgatgcagt tgggtatttt tataaagtcc      2340
     tttatcgtct atttgatgta catgtccctc tttcctcctt gaagaattcg tatagctctc      2400
     catggtttac tcgtcaacta tcctatctaa aaaataaaaa aaacagactt tttaaacggt      2460
     tcaaaatktc tggcttgctg acggactggg ccaaatatag ttctgctaag gcggaatttg      2520
     tccagcacaa ttctgactgt tatcaaaatt acctgtctcg ttgtaagcgt gatttcaaaa      2580
     gtaatcctaa acttttttat tctttcgtca attctaagcg gaaatctaat tgttaccctc      2640
     attctctttt tcttaataat aatatagcat ctgatgacga tgatatttcc aacctatttg      2700
     ctgatttttt tcaatcgact tatacggaat gcaatggtgt tattgataat gattatccat      2760
     acccactacc tcatctgaac tctatcttca aaccagtgat taatgtatct gatgttcttc      2820
     agagtcttga tactcttaag ctctcttttt caccgggtcc tgacaaaata ccaagttgta      2880
     tactgaggaa ttgttcgtcc tatctagctt ttcccttaac attaatattt aatttgtcgc      2940
     taagtcaagg aagatttcca tccatatgga aggaatcgtt tattgttcca ttgtttaaaa      3000
     aagggaacaa gtcmgatatc tcaaattatc gtggtattgc aaaactcagt gcaattccta      3060
     aacttttcga aaaaattatt acctgtcagt tgcagcatca ttgccggtct attatttctc      3120
     cgtgtcaaca tggctttact agacgtcgct ctacttctac aaacctacta gaatttacat      3180
     ctttaattac tagaggcttc ctgacacatc atcaaactga tgtgatttat actgattttt      3240
     ctaaagcttt tgattctgtg aaccataaac ttcttatttt taaattgtcc cgtttagggt      3300
     ttcctccaaa cctacttgac tggatacttt cctacctttc taatagaact caaatggtct      3360
     gttttaacaa tagaatttcc aaaataatta atgttacttc tggagtgcca cagggtagcc      3420
     acctgggtcc tttactcttt ggcttaatga ttaatgatct acctaatgtt ataaaatcgt      3480
     ctaccgtatt aatgtatgca gatgatgtca agctttgttt gtccatgtgt ttacctagct      3540
     catttaatga cctccaatta gatcttgact gtttgtatac gtggtgcatg attaacatgt      3600
     taaatttaaa ctattccaaa tgtaacttta tgacctttta tcgttgtaat ccatctctgt      3660
     tttcttattc tattggaaat aacgcccttg aacgaatttt atcagttcag gatcttggcg      3720
     ttttatttga tcataaactt agtttcaaag accatatatc tactatatck aataaagcca      3780
     gaagtcttct tgcatttatg aaacgttggt caaaggagtt cgatgatccg tacacaacaa      3840
     agcttttgta tgtttctctt gttcgtccgt ctatggaata ttgctcttgt atatggtctc      3900
     ctcaaattag ctgttaccaa aatatgttag agtctgtcca aaaacaattc cttttatttg      3960
     ccctgagggg attacactgg gacacaggta gtcgactgcc ctcttatctt gcgaggttgc      4020
     gcctgctcga cttaccaacc ctctaccatc gtagaaagtg tcatggagtt atgttcttac      4080
     ataaacttat taatggtgat gtcgactccc ctttccttct tagttcactt aactggaatg      4140
     taccctgtag aacagttcgc cgttttcgtc cgttgtccct gccaatatgt agatctaatt      4200
     atgccctgca tgatcctttt cgtgttctgt gtgacgacta taattcactg tgccacgtct      4260
     tactgtttga tacccccaat gctactaatt ataataaact tatgtatttt ctgtcttcaa      4320
     ataatttata aattctttgt aagcatgtat tttaaactgt ctattgttaa atcgtatttt      4380
     ctccatgtcc gcgattccgc ttacttgccc aaaacggttt agggctccgc gcgtaacaag      4440
     ctttgcttgg tgtcgtaagg gccacttgtt tgtactgacc atagtgcatc aacgtccaag      4500
     aaaa                                                                   4504
//
ID   CR1-13_CQ   repbase;    DNA;    INV; 3854 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-13_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3854
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 15-15 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..669
FT                 /product="CR1-13_CQ_1p"
FT                 /translation="KCRVLEIAEAAGAAAPSFVFPTVPVFRFGSTXNRQSG
FT                 SSRSASGQPQAHNAFQTSQSTLAGFHLPAAXSXTAFSLAANTRVXPINNNP
FT                 QSVPQQKAARPRNRKQLQPHLXPFLQPPLVQHNLAPPLQQTAPAFTCKHFY
FT                 VKPFDPATTAEQIANYIQSRTGXXYDNFNCQRLTSESRSDSRPLTFVSFKV
FT                 TVPDVVAFTNVITNSAFWPDFVSVDSFTSRRRS"
FT   CDS           673..3621
FT                 /product="CR1-13_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QSKPCSALASVTSNTRRDILSVYYQNLGGLNSSLAEY
FT                 KLACSDASYDLYAFTETWLQSHTLSSQLFDDTYEVYRKDRSSSTSSKSSGG
FT                 GVLLAVRKELKPREMKVPDTSEVELVWVILPLTEKSVHICVVYLPPDRVND
FT                 SELVERYTQSLLWVVSKLKANDSICVLGDFNLSCLKWISDKDGSLFVDVSR
FT                 STVSTVTARFLDDHHLANLAQISEITNENNALLDLCFVSNDVTEYYRVSRA
FT                 PAPLVKDVRHHPPLHLSIFDSAPCKFADSKTAVYYNFKKADYIGMNTFLNN
FT                 MNWEELLASRNVHSAAEVFSHVLLYAIDQFVPKKCRKPPVTPEWSTPALKR
FT                 LKSSKRSALKCFSKCHSSFYRLQVNNINNRYKHLNKKLFLAHQIRVQKHLK
FT                 KNPKGFWNYVKKQRCESGLPNSMVRDGVDATNTREICDAFRAQFSSVFTHK
FT                 NLSEQEISNAAARVPESLPIPSNVVISHEDFRTASAKLKCSHSAGPDGIPS
FT                 VVLKSCSNSICLPLTKIYNMSLSSGVFPDRWKESFVFPIFKKGCKRDICNY
FT                 RGIAALCAMSKLFEVIVLNFFLHNFSSGIAYDQHGFLPKRSTNTNLVTYVS
FT                 TIQRAIQSGYQVDAVYTDLSAAFDKIDHRIAIAKLRRIGLHGTFIDWVYSY
FT                 LTGRSMQVKIADCLSSPFLVTSGVPQGSHLGPFIFLLYINDVNYQLRCSKL
FT                 SYADDFKLFTIIKKPSDCRFLQQQIKVFSDWCQLNQMVLNPTKCSVITFSR
FT                 KRSPVCFDYTLFENSLKRDRCVKDLGVMLDAELSFKDHVAYMTSKASKLLG
FT                 MIFRMTKYFRDIQCLKTLYCSLVRSTLEYGSIVWAPFYANEINRIEAVQRK
FT                 FTRFALRYSPNQSLDYASRCDFLHLDFLSVRRDLAKTVFVSDLLRSNIDCP
FT                 YLVGQLNINIRRRTLRSFAFLTLPFARTNYAFNEPFSSMCRVFNRCYSSFD
FT                 FNLSRPVQKLQFLTFLREENPRPLNPLV"
XX
SQ   Sequence 3854 BP; 1003 A; 995 C; 723 G; 1124 T; 9 other;
     aaatgccgcg ttctcgaaat tgccgaagcc gcaggtgctg ccgccccctc atttgtattc        60
     ccaaccgttc cagtttttcg tttcggatcc acwamcaacc ggcaatctgg cagctctcga       120
     tcagcgtctg gacaaccaca agctcacaat gccttccaaa catcacaatc aacattggct       180
     gggttccatc ttcctgcagc caamagtakw acggcatttt cgcttgctgc caacactaga       240
     gtgcawccaa tcaacaacaa tccacaatct gtgccacaac aaaaagctgc tcgtccccgg       300
     aaccggaagc agctacagcc ccacttamag cccttcctac aaccaccatt agttcaacac       360
     aatttggctc ctcctcttca gcaaactgcc ccggctttta cctgcaagca tttctatgtt       420
     aaaccgtttg accccgcaac aacggccgag caaatcgcta attacatcca aagccgtacc       480
     ggctgsmgct atgataactt taactgtcaa cgactgactt ctgagtctcg ttcagactct       540
     cgaccactaa cattcgtgtc gttcaaagtt accgtgcccg atgttgtagc ttttaccaat       600
     gttattacca actcagcatt ctggcccgac tttgttagcg tcgattcgtt cacttcaagg       660
     cgtcgttcat agcaatcaaa gccctgctca gctctcgctt ccgtaacatc gaataccaga       720
     cgagacattc tttctgttta ctaccaaaat cttggcggcc tgaatagttc cttagctgaa       780
     tacaagctcg cgtgctccga tgcttcttat gacctttatg cctttaccga aacttggtta       840
     cagtctcata ccctatccag ccagctattt gatgacactt acgaagttta ccggaaggat       900
     aggtcaagtt ctactagttc gaaatccagc gggggcggtg ttcttcttgc tgtacgcaaa       960
     gaacttaaac cacgtgaaat gaaggtcccc gacacctccg aagtcgaact cgtctgggta      1020
     attctccctt taactgaaaa atccgttcac atttgcgtcg tttatcttcc accggaccgt      1080
     gtcaacgatt ctgagcttgt cgagcgttat acccagtccc tcttgtgggt cgtatctaaa      1140
     ttgaaagcta atgacagtat ctgcgtcctg ggcgacttta atctcagctg cctcaaatgg      1200
     atttccgaca aagatggttc ccttttcgtc gacgttagca ggtctaccgt tagcacagtg      1260
     acagcgcgct ttttggacga ccaccatctg gcaaatcttg ctcaaattag tgaaatcaca      1320
     aacgaaaaca acgctttgct tgatctttgt tttgtcagca acgatgttac ggaatattac      1380
     cgagtttccc gcgcgcctgc acctctggta aaagatgttc ggcatcatcc tccgttgcac      1440
     ctgagtattt tcgatagcgc tccctgtaag ttcgccgata gtaagactgc tgtatactac      1500
     aacttcaaaa aagctgacta cattggaatg aacaccttcc tgaacaacat gaattgggag      1560
     gaactgcttg catcacggaa tgtccattct gctgcggagg ttttttctca cgttctattg      1620
     tacgcaattg atcagttcgt ccccaagaag tgtcggaaac cacctgtcac tccggaatgg      1680
     tccactcctg ctctcaaacg actaaaatcc tccaaacgtt ctgcgttgaa atgcttctcg      1740
     aagtgccatt ctagcttcta ccgtctccag gtcaacaaca taaacaatcg gtacaagcac      1800
     cttaacaaga aattgtttct cgcgcatcag attagagttc aaaaacacct gaagaaaaat      1860
     cctaaagggt tttggaacta cgtgaaaaaa cagcggtgtg agtccggcct tcctaattcc      1920
     atggttcgtg acggcgtcga tgcaacaaat acgagagaaa tttgtgatgc gttccgtgcc      1980
     caattctcta gcgtgttcac ccataaaaat ctttctgaac aagaaatatc caacgctgcg      2040
     gctcgagttc cagaatcgct acccatccct tcgaacgttg tcatctcgca cgaagacttt      2100
     agaactgcaa gtgccaagct aaaatgctcc cactccgccg gacctgatgg tatcccctcg      2160
     gttgtcttga aaagttgttc taacagcatt tgccttcctc taacaaaaat ctataacatg      2220
     tctcttagct ccggggtgtt tcctgaccga tggaaggagt catttgtttt cccgatattc      2280
     aaaaaaggct gtaaacgaga catttgcaac taccgcggaa ttgcagccct ctgtgcaatg      2340
     tctaaacttt tcgaggttat cgtgcttaac ttttttctgc ataacttttc ttcgggcatt      2400
     gcttacgacc agcacggatt tctccccaaa cggtcaacta acacaaacct tgtgacttat      2460
     gtttccacaa tacaacgagc aatccaaagt gggtaccagg tcgatgcggt ctacaccgac      2520
     ctctctgcag ctttcgacaa gatcgatcat cgaatcgcaa tcgcaaaact tcgacgtatt      2580
     ggcttacacg ggactttcat tgactgggtt tactcctacc taaccggaag atcgatgcag      2640
     gtaaaaatcg cggattgcct ttcatcgcca ttccttgtga catccggggt acctcagggc      2700
     agccacttag gtccatttat attcctgctc tatatcaacg atgtcaacta tcaacttcgg      2760
     tgctcgaaac tttcttatgc tgacgatttc aaactgttca ctatcatcaa gaaaccctca      2820
     gactgtcgct tccttcaaca gcaaatcaaa gttttctccg attggtgtca gctgaaccaa      2880
     atggtgttaa accccactaa atgttcagtt ataacgtttt cacggaagag gtcgccggtc      2940
     tgcttcgact acacactatt tgaaaactct ttaaaacgtg atcgttgtgt caaagatttg      3000
     ggtgtcatgc ttgacgcaga actttcattt aaggatcatg tggcttacat gacttctaag      3060
     gcatccaaac tgctcggtat gatcttcaga atgactaagt actttcgaga tattcaatgt      3120
     ttaaaaactt tatattgttc actagtcaga tccaccttgg aatacggttc tatcgtctgg      3180
     gcgccatttt atgctaacga gataaatcga attgaagctg ttcaacgcaa attcactcga      3240
     ttcgcattgc gctactctcc caatcaatct ttggattatg ccagtcgatg tgatttcctt      3300
     catcttgatt ttttgtctgt caggagagat ttagcgaaaa ccgtgtttgt ttctgatctg      3360
     ttgagatcca acattgattg tccttacttg gtcggacaac tcaacatcaa cattcgccgg      3420
     cgaacacttc gctcatttgc ctttctgacc ctaccctttg ctcgcaccaa ttacgccttc      3480
     aatgaaccat tctccagcat gtgcagagtc ttcaatcggt gctactcgtc tttcgatttt      3540
     aatttgtctc gtcctgttca aaaacttcaa ttcttgacgt ttctccgaga agaaaatccc      3600
     cgacccctta accctctagt ttaggtttac acttgtagct tatttattta tttatttatt      3660
     tatttattta tttatattgt atgtaatttt cgttagctta ataggttagt ttaagtaatt      3720
     atgtaaaagc ctttttgtca tttggactgt aaatctgttg acaataaaaa aagaggtttt      3780
     gtgcctattt gagaaggacc catcggttgg cgatccactc aaacgggctt ttccctccaa      3840
     acaaaacaaa acaa                                                        3854
//
ID   CR1-13_DTa  repbase;    DNA;    INV; 4455 BP.
XX
AC   .
XX
DT   11-DEC-2012 (Rel. 19.10, Created)
DT   11-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4455
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2824-2824 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           514..1533
FT                 /product="CR1-13_DTa_1p"
FT                 /translation="MSVPCTAKKCEYNGTIVGDSYLLCWLCDNCAHIKCAG
FT                 AGANGRIADLLSKRIGFLWTCSGCLDTAYCMRTFMRQTRDNFRDVHKLVTA
FT                 LTDKVSKVESQFREYKIVGESPKRKIANNNSLEVPADGFPSMLTPTGHDLV
FT                 SPTALAIPAPVLNFVPPASERVNLSPGTLPRNSVLNTPASSTIMALQIPPN
FT                 SMPKDPVNLGRSEVHTQPSTSSNSTQNPSKPHPNVQDARPIRGTRRPLAAV
FT                 SLKAVETKKAIFVSRLRPDTTEDEVRGHLCDMFQVSSDNFIISKFNFNYKR
FT                 KVASFKIILPESFLLRALGPGLWPVDTVVHEFARKELSSNKNSSVPKN"
FT   CDS           1512..4376
FT                 /product="CR1-13_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="KFFGSKKLDFILHYQNVRGLLSKLTSLHANSAAFDSS
FT                 IIAFTETWLNSTVSDSEIMSNKYFIYRRDRPSRRGGGVLIAVKSDLSSQAL
FT                 SIADTADIEFIAVKICLQSSNLFVTCSYIPPCSQASTYLQHLAAIRNISSS
FT                 ADASDHLIVLGDFNIPQLSWLPYDDLAALVPSDQNDFLDGLIALSLGQVNS
FT                 IPNQNGRFLDLIFVSDFCDTTITRCTPLSSPEDPYHPTLQININSVVQFPN
FT                 TSEKAIRTRCFRKVDYSLLSASLTQVDWSILQNLSLENSVSSFYNIMYSLF
FT                 DKLVPSIIQKTSTSPPWSSKHLAHLKNLKTKLYKKFAKTGLQSDFCKYSVA
FT                 KSNYFLHNSECYNSYLLRCKYEFRSNPKLFYSFVNSKRKSKMFPPSLHLNN
FT                 ISASNDQGISNLFADFFQSTYSPYSNHPNSDFSYSYQLAHTDSIYCPVIDE
FT                 RDVSRSLSSIKLSYSPGPDMVPSSVLKYCADPLSVPLTMIFQKSIHLCTFP
FT                 AVWKESFIIPLHKKGSKSDIMNYRGIAKLSAIPKLFEKLICDQLQHQCRSL
FT                 LSPNQHGFTKCRSTTTNLLEFTTYINKGFLSSNQTDVIFTDFSKAFDSVCH
FT                 ELLIHKLRLLGFPLTLLMWIQSYLTGRSQKVQFNNVLSKIVSVSSGVPQGS
FT                 HLGPLLFGLFINDLPQIIVASKVLMYADDVKLCMHMTSPGSHMQLQLDLNN
FT                 LQSWCQVNKLLLNPDKCKSMTFFRSNPAVRTYSIGQSALERIETVLDLGVL
FT                 FDHKICFNRHVSTISNKAKALLAFIKRWSKEFDDPYITKLLYVSLVRPTLE
FT                 YCSCVWSPQYEHYQDMIESVQKQFLLFALRGLNWDSGSRLPSYKDRLRLLN
FT                 LPTLKHRRICTGVIFLHKLLTGGVDSLHLITSINWNVPSRPTRRFRPLALE
FT                 IARSNYSRFDPFRVLCDNYNELYHLLSYECSYDVNSTRVTAFLSSANNQSY
FT                 "
XX
SQ   Sequence 4455 BP; 1205 A; 1099 C; 767 G; 1384 T; 0 other;
     caagcgttac accaagtcgg tcgtgttttt cattcgctcc taaactcttt tcgatttcac        60
     taataaaatc tatccgctta tcaaaatatc tataaagaaa caagatagtt ccatattatc       120
     gtcgttttga taacatttca aacatagact gtgatttaaa aacgtattta aatacgaatt       180
     aatatcaaca taaaccaaaa caaaaacaaa gctttgcatt gctccgcgtt tctgccgctt       240
     gtgttctgtt gttgtttaca ctctccgttg ctctccgaat cgtgcttctc taatctttcg       300
     aacgcgtatt actctctgag cggtcattac ctctctaacg gtacttcctt cgctgtctgc       360
     tttgtgcgtg ctgctgaaac tcaccggttg cccggataat caacggctct cctgcctaat       420
     atttcttgca gtctctttca tcgctcttta atccgagctc gcctacttgg tctataagtt       480
     cccttaatct ttttgaatct cttaactacc aatatgagtg taccgtgcac tgccaaaaaa       540
     tgcgaataca atggcaccat tgttggtgat tcctatttac tatgttggct gtgcgacaat       600
     tgtgcacata ttaaatgcgc tggtgccggc gctaatggtc gcatcgctga tctactttcc       660
     aaaagaatag gatttctttg gacctgcagc ggttgccttg atacggcgta ttgtatgcgc       720
     actttcatga gacaaacgcg ggataacttc agagatgtcc ataaacttgt taccgcctta       780
     actgataagg tttctaaagt tgaatcgcaa ttccgtgagt acaaaattgt gggcgaatct       840
     ccaaaaagga aaatcgctaa caacaacagc cttgaggtgc cggcagatgg gttcccatcg       900
     atgctgaccc caaccggaca tgacctagtt tctccaactg cactagccat ccccgccccg       960
     gtgctaaact ttgtgcctcc agcctctgag cgagtaaacc tgtctccggg aacactccct      1020
     agaaacagtg tattaaatac gccagcatca tccacaatta tggctttgca aattccacca      1080
     aattctatgc cgaaagatcc agtcaatcta ggcagatccg aagtccatac tcaaccctcc      1140
     actagctcta atagtactca aaatccgtcc aagcctcatc cgaacgtcca ggatgcacgt      1200
     cccatacgtg gtactcgtag acccctcgct gccgtgtcct taaaggcagt cgaaactaag      1260
     aaggctatct ttgtctctcg gcttcgtcct gataccaccg aagatgaagt taggggacat      1320
     ctatgtgata tgttccaggt ctcttccgac aatttcataa tttccaagtt caattttaat      1380
     tataagcgaa aagttgcttc ttttaaaatt attcttccgg aatctttctt acttcgagca      1440
     ttaggtcctg gattgtggcc agttgacacc gtagtccatg agtttgctcg taaggaacta      1500
     tcctctaata aaaattcttc ggttccaaaa aactagattt cattttgcac tatcaaaatg      1560
     ttcgtggcct tctcagcaag ctaactagtt tgcatgcaaa cagtgctgct tttgactcga      1620
     gcattattgc cttcacagaa acttggctta attctaccgt atccgatagt gaaataatgt      1680
     ccaataaata tttcatttat aggcgtgacc gcccctctcg tcgaggtggt ggtgtcctaa      1740
     ttgccgtaaa atccgactta tcgtcccaag cgttgtccat tgctgacacg gccgatattg      1800
     agtttattgc tgtaaaaata tgcctgcaaa gctccaacct ctttgtaact tgctcgtata      1860
     ttcctccatg ttcccaagct tctacatatt tgcagcacct cgccgctatt aggaacattt      1920
     cttcatccgc tgatgcttca gatcacctta ttgttttggg tgacttcaat attcctcaac      1980
     tatcctggct gccatatgat gatcttgctg cactagttcc cagcgatcag aatgatttcc      2040
     tagatggtct tatcgcctta tcccttggcc aagtaaattc catacccaat cagaatggga      2100
     gattcctaga ccttatattt gtatctgact tttgcgatac cactataacg cgctgtactc      2160
     cgctgtccag tcctgaagac ccctatcatc cgacactaca aattaacatt aatagtgtgg      2220
     ttcagttccc aaatacttct gaaaaagcga ttcggactcg atgcttccgg aaagtcgatt      2280
     actcgctact gtcggcttcc ttgacccaag tggactggtc tatactccaa aatctttcgc      2340
     ttgaaaattc agtatcaagc ttttacaata ttatgtattc cttatttgat aaacttgttc      2400
     cttccattat tcaaaaaacc tctaccagcc caccgtggtc atcgaaacac ttggctcacc      2460
     taaaaaattt aaagacgaaa ctgtataaga agttcgcgaa aacagggctc caatctgatt      2520
     tttgcaaata cagtgtagcc aaatccaatt atttcctgca taattccgaa tgctataata      2580
     gctacctgtt acgctgcaaa tatgaattcc gcagtaatcc caagctattt tactcttttg      2640
     ttaactcaaa gcgtaagtcc aaaatgtttc caccttctct tcatttgaac aacatatcag      2700
     cgtcaaatga ccagggaatc agtaacctgt tcgcggactt tttccagtcc acatattcgc      2760
     cttattcaaa tcacccaaat tccgatttca gctattccta tcagctagcc cacacggact      2820
     ccatatattg tcctgtaatt gatgaacgtg atgtcagtcg cagcctatcc tcgataaagc      2880
     tgtcttattc tccaggtccc gatatggtgc ccagctccgt actaaaatat tgcgcagatc      2940
     cactttctgt tccattaacc atgattttcc aaaaatctat ccatctctgc acctttccgg      3000
     ctgtttggaa ggagtccttt attattccac ttcataagaa gggcagcaag tctgatatta      3060
     tgaactatcg tgggatagcc aaactaagtg ctattcctaa gctatttgaa aaactcatat      3120
     gcgatcaatt gcagcatcag tgtcgctcct tattatctcc gaatcaacat ggtttcacaa      3180
     aatgtcgttc aactacaact aacctgctgg aatttacgac ctacattaat aaaggcttcc      3240
     tatcctccaa tcaaactgat gtaattttca ctgattttag caaagcgttt gattcagtgt      3300
     gccatgagct tcttatccac aagctgcgcc ttcttggttt cccactaact cttctgatgt      3360
     ggattcagtc ataccttaca ggccgttccc aaaaggtaca atttaataat gtactttcaa      3420
     aaattgtatc tgtaagctcc ggagtacctc aaggtagcca tcttggtcct ttgctatttg      3480
     gtctatttat taatgatctt cctcaaatta tcgtggcctc caaagttctt atgtatgcgg      3540
     atgatgtcaa gttgtgtatg catatgacat cgcctggttc ccacatgcag ctccagcttg      3600
     acttaaataa ccttcaatcc tggtgccaag tcaataagct actgcttaat ccagataaat      3660
     gtaaatccat gacatttttt cgttccaatc cagctgtgcg tacatactcc attggccaat      3720
     cagcgctaga acgcattgaa accgtcctag atcttggagt cctatttgac cataagatat      3780
     gcttcaatcg ccatgtcagc actatctcca ataaagctaa ggccttatta gctttcatca      3840
     aacgctggtc caaggaattc gatgatccgt atatcacaaa gctcctgtat gtttccttag      3900
     ttcgtccaac gctggaatac tgctcatgcg tatggtctcc acagtatgag cactatcaag      3960
     acatgattga gtccgttcag aagcagtttc tcctatttgc cttacgtggt ttgaactggg      4020
     actctggaag ccgactacct tcctacaaag acaggctgcg acttttgaat ctgccaactt      4080
     taaagcatcg tcgaatatgt actggcgtga tcttccttca caagctcctt actggcggtg      4140
     tggactcact tcacctgata acgtccataa attggaacgt tccttctaga ccaactcgtc      4200
     gatttcggcc attagcactg gaaattgcca ggtcaaacta ctcccgtttt gacccattcc      4260
     gagttttatg cgacaactat aatgaattgt accacttatt atcctatgag tgttcctacg      4320
     atgtaaattc aaccagagtc actgcgttcc tgtcatccgc aaataatcaa tcatattgaa      4380
     aatttcttgt atatttttta agtccaatga gctgttcata gctttatata ttaaataaat      4440
     aaataaataa ataaa                                                       4455
//
ID   CR1-14B_CQ  repbase;    DNA;    INV; 4709 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-14_CQ;
KW   CR1-14B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4709
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 16-16 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
CC   The consensus is ~77% identical to that of CR1-14_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..1515
FT                 /product="CR1-14B_CQ_1p"
FT                 /translation="MRVDVPVDQTLDSNNSVPTVSDAEAALGAAALAVERA
FT                 AAARTTNSSIVQAAQLDGTTPPIAPRNAVATSAAAAQSATAHPDAVHPAAS
FT                 HAAPAAHSTTALLPPTDPGVQQAVLPHSQVSQQLLITPQAPPQPQTMPSSQ
FT                 PLVVPPQSMLPSQPLVSAQPPPQTMPLLQPLVLPSPQRQAPPPPLITQPLQ
FT                 TAPQALTHAASTSSSSSTATNRIVPDARFSVESYQQSKAPEVNFIPFKTSF
FT                 IVSEGNRINVHGPSLTQCQQLLDSNISEPNCQIHEQNCTPHTTQATNYCET
FT                 TNTISNLQHPSLLVAPPEQSTSDDSAELKWFYVSRFLPSETCDNLIRYIQN
FT                 KTXCDSARIICQKLVRKNRNSARPLTFLSFKLSVPESIESLIVATDFWPEG
FT                 VTIKPFLVKRQAPELIGPSSHNPQPLNNLVSPRSSRTTTPRRRPAPKMIPN
FT                 QPQHTARLYPYNLPLPFYHPSQLAVPHMNQYLPLYGQMPEAVHHRQQWSTM
FT                 V"
FT   CDS           1500..4478
FT                 /product="CR1-14B_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVNNGLRSAISPAPPPTDPRTTNQAALHREEATNLLL
FT                 YYQNVGGMNTTIANYYLAISSASYDFYAFTETWLSTTTLSSQIFGTEYEVF
FT                 RCDRSAANSCKDSGGGVLLAVRSSLKPRQLIPPNCTCPEQVWVSVPLASST
FT                 LFVCVVYIPPKFDNDATLFEQHRRSLTWILSKTKVNDSIMIVGDFNFPGIR
FT                 WTRTPTNKLLPNLALTPSNKLKHDLLDEYSTANLSQLNDLCNSSNNVLDLC
FT                 FASSXVPVNCALLPAPSPLVKDVRHHLPFLVSISCTVFTFSDTNGSTFIDY
FT                 RNGNYEGMNEFLATVNWTRLMANLDANEAAVTWTEILTQAINVFIPKKQRQ
FT                 PPQHPPWSTHRLKKLKTVKRAALKKYAKHPTDRWKNHYRAKNRKYSLLNNQ
FT                 LFRRHLNRIQSRLKREPKKFWNHVNEQRKETGLPTSMVLDGDEATTTESIC
FT                 DLFRRQFCSVFNNETVADSQVARAASNVPLRPPIGPHPVISSESVRRACAR
FT                 LKSSNSCGPDGIPAVVLKKCCDALAEPLAQLFNTSLSTGVFPCFWKKSFVF
FT                 PVHKKGPKRDVRNYRGIAALCAVSKLFEVIVLDFIKFNCCDYIAQEQHGFM
FT                 AKRSTSSNLVTYSSFILRTMQKRKQIDAIYTDLSAAFDKLNHRIAVAKLER
FT                 LGFSGSLLEWLRSYLTGREMSVKVGDVISAIFAVFSGVPQGSHLGPLIFLL
FT                 YMNDVHPLLKCHKLSYADDIKLFTVIEETGDCQFLQEQLNRFANWCSDNRM
FT                 VLNATKCSAITFTRKRNKISFDYTLSNTTIPRTSCVKDLGVMLDSKMTFTD
FT                 HITYMVSKASKTLGFVFRIAKHFRDLGCLKALYCSLVRSTLEYCSTVWAPF
FT                 YQNAIQRVESVQRKFVKYAQRHITWPDPLNPPSYAERCKMLNLDPLSVRRD
FT                 VAKAVFVADLLQSSIDCPAVLQLININTRRRVLRNHSFLTVRRALTNYGHN
FT                 EPVSSMCRIFNLCSDHFDFDLSRDKIKIRFLNFLKSLP"
XX
SQ   Sequence 4709 BP; 1170 A; 1381 C; 965 G; 1189 T; 4 other;
     tctttacctc agccagacaa aataatgaga gttgacgttc cggttgacca aacgctcgat        60
     tcaaataatt cagtccctac cgtttcagac gctgaggctg ctctgggagc ggctgccttg       120
     gctgttgaac gcgcagctgc cgctcgtacc accaacagct ccatcgttca agccgcccag       180
     cttgacggga ccactccacc gattgcccct cggaatgcag tcgccacctc cgccgccgcc       240
     gctcaatcag cgaccgctca cccagacgcc gttcatccag ctgcgtctca cgcggcccct       300
     gctgctcact cgaccaccgc attactgcct ccaactgatc ctggggtaca acaggcggtt       360
     ttgccgcatt cgcaggtctc gcagcagctg ctaatcacgc ctcaggcccc gcctcaaccg       420
     caaaccatgc cctcgtccca gcctctggtt gtgccaccgc agtccatgct tccctcgcag       480
     cctctggtct cagcgcagcc gccaccgcaa accatgccct tgctccagcc tctggttttg       540
     ccgtcgccgc aaagacaggc cccgcctccg cctctgatta cgcagccgct gcagactgcg       600
     cctcaggctt taacccacgc cgcatcaaca tcttcctcgt catctaccgc taccaaccgc       660
     attgttcccg acgcacgatt ttctgtggaa agctaccagc aatcaaaagc tcctgaagtt       720
     aacttcattc cattcaaaac tagttttatt gttagcgaag ggaataggat taatgttcat       780
     ggacccagtc ttacgcaatg tcaacagctg ttagactcaa acatctcgga acccaattgc       840
     cagattcacg aacaaaactg tacacctcac actacacaag ctacaaatta ttgtgaaacc       900
     accaacacca tcagcaacct acaacatcct tcacttttgg tagcccctcc agaacagtcc       960
     acctctgacg attcggctga gctaaagtgg ttttacgtct cccggttcct tcctagcgag      1020
     acttgtgata atctgatacg ctacatacaa aacaaaacga amtgcgattc cgcccgcatc      1080
     atttgtcaaa agttagttcg caaaaatcgt aactcagcca ggcccctcac gtttctctcg      1140
     ttcaaactaa gcgttccgga atcaattgag agtttgattg tcgctacaga cttttggcca      1200
     gaaggtgtta caatcaagcc ttttttagtg aagcgacaag ctcccgagct cattggtcct      1260
     tcctcacaca acccgcaacc actgaacaac ctcgtttcgc cacgcagttc acgaacaacg      1320
     actcctcgtc gccggcccgc tccgaaaatg attcccaatc agcctcagca cacagcacgt      1380
     ctgtacccat acaatctacc gctaccgttt tatcatccca gtcagttggc ggtgccccat      1440
     atgaaccagt atcttccgct gtacggtcag atgccagaag ctgtccacca caggcagcaa      1500
     tggtcaacaa tggtttaagg tctgccattt cacccgctcc accaccaacc gaccctcgta      1560
     cgactaacca agctgcgctg catcgtgaag aagcgacaaa tcttctgctc tactatcaaa      1620
     atgtaggggg tatgaacact accatcgcaa actactatct cgctatctct tccgcttctt      1680
     acgactttta tgcatttacc gaaacctggc tgtcaacaac taccctctcg agtcaaatct      1740
     tcggtaccga atacgaggtt ttccgctgcg atcgttctgc cgcgaacagc tgcaaagatt      1800
     caggcggagg tgtccttctt gccgtccgct ccagtctcaa gccacgccaa ctgatcccac      1860
     cgaattgcac atgtccagaa caggtgtggg tttcagtccc tctcgcctca tccacattgt      1920
     ttgtgtgtgt tgtttatatt ccaccaaaat ttgacaacga tgcgactctc tttgagcagc      1980
     acagacgatc tttgacgtgg attttatcca agacgaaagt caatgacagc ataatgatcg      2040
     tcggcgattt caactttccg ggtatccgtt ggacacgcac cccgacgaac aaattgctac      2100
     caaatcttgc tctcaccccc tcgaacaagc ttaaacacga tctcctggac gaatattcga      2160
     ctgcgaacct gagccagtta aacgacctgt gcaacagctc caacaacgtg ctcgaccttt      2220
     gctttgccag ctcgaawgta cctgtcaatt gtgccctcct cccagcacct tcacctctcg      2280
     tgaaagacgt tcgtcaccac ttgcccttcc tggtttctat ctcgtgtaca gtgttcacct      2340
     ttagtgacac gaacggtagt accttcatag actaccgcaa tggtaactac gaaggtatga      2400
     acgaattctt ggcaaccgtt aactggactc gactgatggc caatctcgac gccaacgaag      2460
     ctgctgttac ttggacggaa attttgacgc aagctatcaa cgtcttcatc ccgaagaaac      2520
     agcggcaacc tcctcaacat ccaccatggt ctactcaccg cctgaagaag ctkaagaccg      2580
     tgaaacgtgc cgcactcaag aaatatgcca agcatccgac agatcgttgg aaaaaccact      2640
     acagagctaa gaaccggaag tacagtttgt taaacaacca actttttcgc cgccacctga      2700
     accgcatcca gagccgcttg aaacgtgaac ccaaaaagtt ttggaaccac gtcaacgagc      2760
     agcggaaaga aactggtctc ccaacctcga tggtactcga cggtgatgag gctacaacca      2820
     ccgagagtat ttgtgacctt ttccggcgcc agttctgcag tgtcttcaat aacgaaactg      2880
     tagcagactc gcaagttgct agggctgcta gtaacgttcc actgcgacct cccatcggac      2940
     ctcatccggt gataagctcc gagtccgttc gccgtgcctg cgcccgcctg aagagttcca      3000
     acagctgtgg accggatggc atccccgcgg ttgtgctcaa aaagtgttgc gatgcactcg      3060
     cggaaccgct ggctcaactc ttcaacacct cgctttccac cggagttttc ccatgtttct      3120
     ggaagaagtc gtttgtgttc cctgttcaca aaaaggggcc taaacgtgac gtccggaact      3180
     accgcggaat cgctgccctc tgcgctgtaa gcaagctctt cgaagtcatt gtgctagact      3240
     tcatcaagtt caactgttgt gattatatcg cccaggaaca gcatggcttt atggcgaaac      3300
     gttctaccag ttccaatctg gtcacctatt cgtccttcat cctacgaacc atgcagaaac      3360
     ggaaacaaat tgacgccatc tacacggatc tatcggcagc attcgacaag ctaaaccacc      3420
     gtattgctgt tgctaaactc gagcgactgg gcttcagcgg ttctctgctc gaatggcttc      3480
     gctcctacct caccggacga gaaatgagcg tgaaagtggg cgacgtaatt tctgccatat      3540
     ttgctgtttt ttcaggcgtc ccacaaggca gccacctggg tcccctgatt tttctcctct      3600
     atatgaacga cgtgcaccct ctgcttaaat gtcacaagct gtcttacgcg gacgacataa      3660
     agcttttcac tgttatcgag gagaccggag actgccagtt tcttcaagag cagctcaacc      3720
     ggtttgccaa ctggtgctcc gataacagaa tggttctwaa tgcaactaag tgttcagcaa      3780
     tcactttcac ccgcaaacgc aacaaaattt cctttgacta tactctttca aacaccacca      3840
     tacctcggac gtcctgtgtg aaagatttag gcgtgatgct ggatagcaaa atgacgttta      3900
     ctgaccatat tacgtatatg gtttccaaag cttccaaaac attaggattc gtctttagga      3960
     tagctaagca ttttcgagat ttaggctgtc tcaaagctct ttattgctcg ctggttcgtt      4020
     ctacgctcga gtactgttcc acggtttggg ctcccttcta ccagaacgcc attcaacgcg      4080
     tggagtcggt gcagcgaaag ttcgtcaaat atgcccaacg tcacatcacc tggcctgatc      4140
     ctttaaatcc tccgagctat gctgagcgtt gcaaaatgct aaaccttgat cctctctcgg      4200
     taagacgtga tgttgcaaag gcagtgtttg tagctgacct cctgcagtcg tccattgatt      4260
     gtcccgctgt tttgcaactg atcaatatta acacccgccg gcgtgtactt cgcaaccact      4320
     cttttttgac ggttcgccga gctctgacta attacggaca taacgaacca gtttctagta      4380
     tgtgtcgtat ttttaacttg tgctctgacc atttcgactt tgacctgtcc cgcgacaaaa      4440
     tcaaaatccg tttccttaat ttcctcaagt cccttccctg acaatacaca cgtagatatt      4500
     agaacactgt gatatttttg ttaatttatt gagttagttt taaagtgaac ccgtcttgta      4560
     tcatttgagt tttgtgtact tgttgatgcg aaaagacgag gtggttttgt gcctctttga      4620
     gagagtgtct tggaatatgc tagacacatc tcaagggggc ttttgtccac ctcctaataa      4680
     agaaaatgaa aatgaaaaaa tgaaaatga                                        4709
//
ID   CR1-14_CQ   repbase;    DNA;    INV; 5595 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-14_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5595
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 17-17 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..5362
FT                 /product="CR1-14_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPKTGKIEVVACCDAGSRGTKIRCEFCAKSWHTKCAN
FT                 ITANAIKTLRDTGGACWLCPTCRTPDGRQPASSDTSKLILQRVTSALLLIG
FT                 NLTDTMRVFCRMYSASLSASTPSTTVLPPTAALEPDLSDAFHANLSDLFDS
FT                 ILGDGNKRPRTSSLSRASEVQPEKILRVDVPVDQTSTSNITVPPVSGAADA
FT                 SPSATLETAVTTTPSAVNLLAVADPATSPLAAAVAAVTGVANADASADTLL
FT                 GSSELAASLPISPHQSSTXATAAAVAAMPPTIQPEEPPLTMLSVQPLVTPQ
FT                 PPPPXIMPSLQPQQVANIPQVLQPLQIMPQAPPQPLTMPSSQPLVMLSPTM
FT                 LSAQPLVTPQPPLPPPRKLAPPPPLIMQPLQTAPPASTAASTNEFAVRSSE
FT                 AVDSNXQSTTPTVNFIPCPTSFTVTDGNNINVYGPSPALLEQLTVSTNXNC
FT                 QTRQTNCMPHTTQNNAMLNQAANNPSPPGNINQSHPTLLVAPLEQPVSELK
FT                 WYYVSRFLPTETPENLIRYIRHQTNCDALIVCQKLVRKNRNANRPLTFLSF
FT                 KLNVPESIENRITAADFWPEGVTIKPFLVNRQPPPTNWSSLDQSQPAEQPH
FT                 AYQEQSTHSNPSSPALTXHDTEAIVDAADSLSVPSQPILACVSSQPADGAF
FT                 XIPVHAAVQSNARVQQHSTIDNGLIPSSAHSVSSIQNAQAAVSTNLLLYYQ
FT                 NVGGINTTIANYALAISSASYDLYAITETWLTSATLSSQIFGPEYEVFRGD
FT                 RTASNSCKGSGGGVLLAVRSNLKPRQLFPPDCTVPEQVWVAVPLAASTMFV
FT                 CVIYIPPKFDNEKPLFDQHRXSLTWIVSKMKANDSLMVLGDFNFPAIRWTR
FT                 TPTNKLIPNLALTPTNELKHKLLDEYSTANLSQLNDMCNNSSNVLDLCFAS
FT                 SGTPINFTLLPAPLPLVKDVRHHFPFLVSISCTTLDFRDVAGNTFMDYRKG
FT                 NYDGMNNFLTNINWNQLLANLDADTAADTWTGVLTDAINTFVPRKQRQPPR
FT                 HPPWSTPRLQILKSRKRAALKKYTKHPTDRWRNHYRSRNRKYSILNKQLFR
FT                 RHQHRIQSRLKRDPKKFWNHVNEQRKETGLPTAMILDGEEATSTESISDLF
FT                 RRQFSSVFTNEAVGETHIAKAASNVPLRPPIGPHPVVTSESIRRACASLKG
FT                 STSCGPDGIPAFVLKKCCDALAEPLAQLFNTSLATGVFPCCWKKSFVFPVH
FT                 KKGPKRDVRNYRGIAALCAVSKLFEVIVLDFIKFNCCDYVALEQHGFMAKR
FT                 STNSNLVSYSSFILRTMQQRKQIDAIYTDLSAAFDKLNHRIAVAKLERLGF
FT                 GGPMLDWLRSYLTGREMSVKIGDVISAAFSVFSGIPQGSHLGPLIFLLYMN
FT                 DVHHLLGCHKLSYADDIKLFTVVENDTDCQFLQEQLDLFANWCSENRMVLN
FT                 ASKCSVISFTRKRNTMSFHYTLSNTTIPRTSCVKDLGVMLDSKMTFADHIT
FT                 YTVSKASKTLGFIFRIAKNFRDLSCLKALYCSLVRSTLEYCCIVWAPFYQN
FT                 AIQRVESVQRKFVKYAQRHIIWPDPANPPSYAERCKMLNLELLTVRRDVSK
FT                 ATFVADLLRSSIDCPAVLQLVNINTRPRVLRNHSFLTVHRALTNYGQNEPV
FT                 SSMCRVFNLCSDLFDFDISRDTIKKRFLNHLKSHP"
XX
SQ   Sequence 5595 BP; 1402 A; 1631 C; 1153 G; 1401 T; 8 other;
     taccaacaac actttcggat waaatttttg ttgacatcag tccgcagttt tatttcgata        60
     tttgattgca aagtgctttt attttcatta aaacgcgtta cttcgccggt tgaaacacct       120
     gtgtttacgc gcatagtgaa gttaagtgcc ttaattggat atttggattg tttttcgtgt       180
     gattaatatt acactccttg catctcgccg ctgtttttgc cgccctcgtg aagcactgta       240
     gtctcggaac actacacttg gctcccgtag tcccgcgacc tcacgcgcac atttggagca       300
     gtccttcgca gtgtgcgttt gtttaccctc cgcaactacc cagtctgaag aacgggccga       360
     aagcgagtcg aaagcgtgca tcgtctgtac gatttactcg aagatgccta aaactgggaa       420
     gattgaggtg gttgcgtgtt gtgacgccgg ttctcgtgga acgaaaattc gatgcgaatt       480
     ctgcgccaag agctggcaca ctaagtgcgc aaatattacc gcgaatgcaa tcaaaactct       540
     tcgtgacacc ggtggtgcat gttggctttg cccgacgtgc agaacaccag acggaagaca       600
     acctgcatcg agtgatacca gcaagctcat cctacagcgt gtcacatcag cgctgttgct       660
     catcgggaac ttgacggata ccatgcgagt cttctgtcga atgtactctg catcgctctc       720
     tgcatcgacg cccagtacaa ccgtgctgcc cccaactgct gctcttgaac ctgacctgtc       780
     cgacgccttc cacgcaaact tgagcgatct attcgattcg atccttggtg acgggaataa       840
     aaggccccgt actagcagct tatccagagc atctgaagtc caaccagaga aaatactgag       900
     agttgacgtt ccagttgacc aaacctccac gtcaaacatt acagttcctc ccgtttcagg       960
     cgctgctgac gcttctccgt cggccacact tgagactgct gtcaccacta ctccgtcggc      1020
     cgtgaacctg ctggccgtcg cggatcccgc cacttctcca ttggctgccg ccgttgccgc      1080
     tgtcaccggc gtcgccaatg ctgatgcttc agctgacact ctgctgggtt cctctgagct      1140
     cgccgcttct ctaccgatca gccctcatca atcgtctacc wccgccactg ccgccgccgt      1200
     cgcagcaatg ccgcctacaa ttcagcccga agaaccaccg ctgactatgc tttccgtcca      1260
     gcctctggtc acgcctcagc cgccgccgcc asaaatcatg ccctcgcttc agcctcagca      1320
     agtagccaac ataccgcagg tcctgcagcc gctgcaaatc atgccacagg ccccgccaca      1380
     accgctaact atgccctcgt cccagcctct agttatgcta tcgccgacca tgctttccgc      1440
     ccagcctctg gtcacgcctc agccgccgct accgccgccg cgaaaactgg ctccgcctcc      1500
     gcctctgatt atgcagccgc tgcagactgc gccgccagca tcaaccgctg cctctaccaa      1560
     cgaatttgca gttcgctctt cagaagccgt cgactccaac maacaatcga caacacctac      1620
     agttaatttt ataccgtgcc cgactagttt taccgtaacc gatgggaata atattaatgt      1680
     ttatggacct agtcctgcac tgcttgaaca gcttacagtc agcaccaacm agaattgtca      1740
     aacacgccaa acaaattgta tgccacacac cacacaaaac aatgcaatgc taaaccaagc      1800
     agcaaacaat ccctcaccac ccggcaatat caatcaatcc caccctacac tacttgtagc      1860
     tcctctagag caaccagtgt ctgagctgaa atggtactac gtctctcgat tcctcccaac      1920
     tgaaacccct gaaaacttga ttcgctacat tcgacaccaa acgaattgtg atgccttaat      1980
     cgtttgtcag aagctagttc gcaaaaatcg caatgcgaac agacctctca cattcctctc      2040
     attcaaactt aatgtccctg aatcgatcga gaacagaatc actgctgctg acttctggcc      2100
     tgaaggagta acgattaaac cttttttagt gaatcgacaa ccccccccaa caaactggtc      2160
     ctcccttgac caatctcaac cagcagaaca accacatgcc tatcaggagc agtccacgca      2220
     cagtaacccc tcgtcgcctg ccctcacawa ccatgacacc gaggcaattg tcgacgcagc      2280
     agacagttta tccgtaccct cccaacctat cttggcctgc gtttcatccc aaccagctga      2340
     cggtgccttc cktataccag tacatgccgc agtacagtcg aatgccagag tacagcaaca      2400
     ttcaacaatc gacaatggtc tgatcccgtc atctgctcat tcagtctcat cgattcaaaa      2460
     cgctcaagct gctgtttcta cgaatctgct actttattac cagaacgttg gaggcattaa      2520
     taccactatc gccaactacg ccctcgcaat ctcttccgcc tcatacgacc tgtacgcaat      2580
     aactgagacg tggttgactt ctgctactct gtctagtcaa attttcggtc ccgaatatga      2640
     agtattccgt ggagatcgga cagcctcgaa cagctgtaaa ggatcaggcg gaggagtcct      2700
     gcttgccgtc cgctcgaacc taaagccacg ccaattgttc cctccagatt gtaccgttcc      2760
     ggagcaagtc tgggttgcag ttccactcgc tgcatccacg atgtttgtgt gtgttatcta      2820
     cattcctccc aaatttgaca acgaaaagcc gctgttcgat cagcacagac amtccttgac      2880
     gtggatagtt tccaagatga aagcgaacga tagtcttatg gtgctaggtg acttcaactt      2940
     cccagccatt cgctggacgc gcacaccgac gaacaaactg attccaaact tagccctcac      3000
     tccgaccaat gagttaaagc acaaactcct ggatgagtat tctaccgcaa accttagcca      3060
     actgaacgac atgtgcaaca actcaagcaa cgttcttgac ctatgctttg ccagctctgg      3120
     gacaccgatc aactttaccc ttctaccagc tcctctgcct ttggtgaaag acgtgcgcca      3180
     ccactttccg tttcttgttt ccatttcctg tacgacgctc gattttcgtg atgttgctgg      3240
     taatacgttc atggactatc gtaagggaaa ctacgatggc atgaacaact tcctgaccaa      3300
     cattaattgg aaccaactac tggccaacct tgacgccgac acagctgctg atacttggac      3360
     aggtgttcta acagacgcca tcaacacctt cgttccaagg aaacagcgcc agcctccaag      3420
     acatccaccg tggtcaacac ctcgactgca aattttgaag tccaggaaac gcgctgccct      3480
     caagaaatac accaaacacc cgacagatcg atggagaaac cattataggt caagaaaccg      3540
     gaagtacagt atcctgaaca aacaactttt tcgtcgccac caacaccgaa tccaaagccg      3600
     attgaaacga gaccccaaga agttctggaa ccacgtaaac gagcagcgga aagagacagg      3660
     tctaccaact gcgatgatac tcgacggtga agaggctact tccaccgaga gtataagcga      3720
     tctgtttcgt cgccagttca gcagcgtatt caccaacgaa gcagtagggg aaacgcatat      3780
     tgctaaggct gctagcaacg ttccactgcg acctcccatt ggacctcacc cggtggtcac      3840
     ttccgagtcc atccgtcgtg cctgcgcctc tctcaaaggt tctaccagct gcggcccaga      3900
     cggcatcccc gcgtttgtgc taaaaaagtg ttgcgatgca ctcgcggaac cattggctca      3960
     actcttcaat acctcgcttg ctactggagt tttcccgtgt tgctggaaga agtcctttgt      4020
     tttcccagtc cacaagaagg gcccaaaacg tgatgtccgg aactatcgcg gaattgctgc      4080
     cctctgcgca gtcagcaaac tgttcgaagt aatcgtgctg gatttcatta agttcaactg      4140
     ctgtgactat gtcgccctgg aacagcacgg cttcatggcg aaacgttcca ccaactctaa      4200
     cttggtctcc tactcgtcct tcattcttcg aaccatgcag caacggaagc agatcgatgc      4260
     catctatacg gacctatcag cggctttcga caagctgaac caccgcattg ctgttgcgaa      4320
     actggaacgc ctaggtttcg gcgggcccat gctcgattgg ctacgctcct atctcactgg      4380
     ccgtgaaatg agcgttaaaa tcggtgacgt gatttccgct gctttctctg ttttttcagg      4440
     cattccgcaa ggaagccatc tgggccctct gatcttcctc ctctacatga acgacgtgca      4500
     tcatctttta ggctgtcaca aactgtcgta tgcggatgat atcaaactgt tcaccgttgt      4560
     cgagaatgat accgactgcc agtttcttca ggagcagctc gacctgttcg ccaactggtg      4620
     ctccgaaaac aggatggttc tgaacgcttc caagtgctcg gttatctctt tcacacgcaa      4680
     gcgcaacaca atgtctttcc actacacact ttcaaacacc accataccta ggacctcctg      4740
     tgtgaaagat ttaggtgtga tgctggatag caaaatgacg tttgctgacc acattacgta      4800
     tacagtctcc aaggcttcca aaactcttgg cttcatcttt aggatagcta aaaacttccg      4860
     ggatttaagc tgtctcaaag ctctttattg ttcgttggtc cgctctactt tagagtactg      4920
     ttgtattgtt tgggctccct tctaccagaa cgcgattcaa cgcgtggagt cggtccagcg      4980
     gaagttcgtt aagtacgcgc aacgtcacat tatctggcct gatcccgcca atccaccgag      5040
     ttacgcagag cgctgtaaaa tgcttaatct cgaacttctt acagtaaggc gtgacgtttc      5100
     caaggcgacc ttcgttgcag atctccttcg atcgtccatc gattgtcctg ccgttttgca      5160
     actggtaaac ataaacactc gccctcgcgt actccgcaat cactcgttct tgactgtcca      5220
     cagggctctc acaaactatg ggcagaacga accggtttca agtatgtgtc gtgtttttaa      5280
     cttgtgctca gatctgtttg actttgacat ctcccgtgac actatcaaaa aacgattcct      5340
     taatcacctg aaatcccatc cctaacctga cgatacacac gtagatttta gaactgtgat      5400
     atttttttaa tttattgagt tagttttaag agtgaccccg tcttgtatca tttgagtttt      5460
     gtgtacttgt tgatgcgata agatgaggtg gttttgtgcc tttttgagaa agtgtctttt      5520
     atcgataacc agacacagct caagggggct tttgtccacc tccaataaag aaaaaaaaaa      5580
     aaaaaaaaaa aaaaa                                                       5595
//
ID   CR1-14_DTa  repbase;    DNA;    INV; 4898 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   04-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4898
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5933-5933 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4898 BP; 1261 A; 1148 C; 945 G; 1544 T; 0 other;
     agtcgtcagc tagctttctt tgcgttcgga cgtgcttata attctcgcta tgttgcttca        60
     ccgctgtccc gagtgcaata ccgatgttac accggcccag cttcgcgcct cggatgctat       120
     ccgctgttct tctttgtgcc ggcgcgctta tcatacttct tgcgttgacc taccggacga       180
     tgtgataaaa attctattaa atccaaacat actgtggcaa tgtgacagct gtgtggttgc       240
     gaatgattcg cattctaaaa ttgatgaact tgatgctaaa ttgcaagccc tggaatgctt       300
     atatcagggc cttaataaaa aatttttgga ggcattccca cctaaaaata atgcattgaa       360
     tcaaaatcaa aacataaatc ttaagcctcg tcaaccgagg cctgccaatg tatctgcagc       420
     tccccagtca tatgcggctg ctgctgctac gtcttccgcg gtcgttgacc cgtctaatca       480
     tgctctggat atcgggagag gaaatttcat acaagtccga aataagaaga gaaggaacaa       540
     caacaagccc aagcatattg ttggagtggc ccctaatgcc gaagatcttc acgtattgcc       600
     aagtaataaa ttcttgcatg tcggaaagtt tgcaacagct accgatcctg ctgctgtttt       660
     aaaatatgtg tccaccaagc ttaatgtgga cgctaattct ttcacttgtg taaaacttgt       720
     aaaaaaagat gttgacgttg caactttaaa gtttgtaaat ttcaagcttg gtatccctga       780
     tcacctttat gattcagtct tcaagaatga tttttggcca aactcagtta aggtcaaaag       840
     atttattcat agagaacggg ccgttatgga cgtggataat atcgtatcca atttgccgga       900
     gcctgcacaa acttcaacga caattcatcc atcaaaaaac ccctagtaat cggcgccact       960
     ggcgtcgata cttttgcggg acattttttg caagcattgg tcactgctct ctcatcatct      1020
     tccgcctctc tcccgtcgca tcgtcaacaa catcagccgg agctgttgtt gtccactttc      1080
     tgcgacattc gccgtccgcc aagctctaac atcggcgcgc tcctcggagt tgcgctctca      1140
     tcatcttccg cctctctccc gtcgcatcat caacaacatc agccggagct gttgttgtcc      1200
     gctttctgcg acattcgccg tccgccaagc tctaacatcg gcgcgctcct cggagttgcg      1260
     ctctcatcat cttccgcctc tttcccgtcg catcgtcaac aacatcagct ggagctgttg      1320
     ctgtccgctt tgtgcgactt tcgccatccg ccaagctcta acatcggcgc gctcctcgga      1380
     gttgcgccct catcatcttc cgcctctctc ccgtcgcatc gtcaacaaca tcagccggag      1440
     ctgttgttgt ccgctttgtg cgacattctc cgtccgccaa gctctaatat cggcgcgctc      1500
     cttggagttg cgctctcatt atattccgcc tctctcccgt cgcatcgtca acaacatcag      1560
     ccggagctgt tgttgtccgc tttctgcgac attcgccgtc cgccaagctc taacatcggc      1620
     gcgctcctcg gatttttttc cggtgctctc tggagttgct ctccccatca acaactacaa      1680
     tgggctgtgg cagctggagg gggctctcgc gcactattaa caggagcgga ttcacctgcg      1740
     tgcagtcata ttcagaatgc taataatgac cgcccacgaa atattgggag tgatgatcac      1800
     cagcctattc gtatccgcac aactacttta ctgaaggttc ttattaataa ttctaatact      1860
     tatgataaga tcccagcaag gcctcttatg gattcgggcc atgacgctgg accaagtatt      1920
     gatagcatga ccagggatga ccgtacatgc acaaataata taactttcaa tatttatttt      1980
     caaaatgtcg gtggtatgcg tacaaaagct ccatcgcttt tcttggcaac gtctcaatgc      2040
     gatcatgacg tcatcatttt tgttgaaacc tggctcaaca tggatttctt tgataatgaa      2100
     ttcttcgata cgaatcttta ccatgtattc cgtaaggatc gtgatgccgt taaaacaaga      2160
     tgctccagag gtggcggcgt tttaattgct gtgcggcgtg gacttcgttg cactgctatt      2220
     cgtctccaga atgaggattc tctgctcgat caaatctgtg tatctctctc tggtcctaca      2280
     gaaacaattt tcctgacagt ctcatatata ccccctagca gcagttttga tctttataaa      2340
     gcgcacgttg ataacattgc ccacctacac caggagctgg aggagggcca gtacatatgt      2400
     gttttgggcg acttcaacct atcttcgctc gtgtgggctc atgattcaga gtcctcagca      2460
     atggttccca gtaacttgca tcttccctac gaaatcttag tcattgatga gcttcttagt      2520
     atggcattag tccagattaa ccatgtattt aataatttaa ataagcttct agacttaatt      2580
     tttgtacatc ctgatttaag cattaattta tgttgcagcg ataatccact tgccgcgtgt      2640
     gatgctcatc acaagccttt gttaatctct attacttgtt atatttttcg cccaattaat      2700
     tctcgcttgc cttttactta tattaattct agcagtttag attctatccg taacgatatt      2760
     tctaatatta gatgggcgga ggtcctctcg catgcagatg tgaatacaag ctatgaagtt      2820
     tttttatctt ttctctctac tattgtgggc agatatacta aaactagggt tcaaagttgt      2880
     tacagactgc catggtacac gcaaggacta aagaaatata aaaaccttag aaataaattc      2940
     tataagcgct acttagaaag cggtgatgct ggtgactttg accgttacaa acagcataag      3000
     cgtgagtttg agttcctcaa taaattctta tacaaccaat atattgctga tatagagcgt      3060
     aaattaacta ccaatcctaa atcattctgg cactttatca attctaaacg aacatcttct      3120
     tactttcctt cccatatgtc atttgaagat cattcagcct cctcggatat tggggtcgct      3180
     aatctatttg ctaagttctt tgcatctaac tttgagccgg gctcgctgtg gaatgacgaa      3240
     gattcgctca atgccattcc tactatgtta aatattggtt gcttagatgt caccgattct      3300
     gactgccatc tggcggctga atgctttaat gagtcagcaa aattagattg tgatggcctt      3360
     tctccattta ttttgaaaaa ttgtataggt gttctttgtg agccccttaa aatcatcttt      3420
     aatttatctc tttccactgg tgtttttacg catagatgga aactggccac tgttactcct      3480
     atattcaagt cgggtgcaaa aaacattgtt tcaaattata ggccaattgc aaagctcagc      3540
     aatgtctcaa aaatgttcga acgaattgta gccaagcagc taacttttct tgttggtcgg      3600
     atcatcagtc ctaaccaaca tggttttatg cctcgacggt ctactaccac aaacttagct      3660
     acgttcaatc atttttgcac ccactcgttt ctcagtcatc atcaagttga tgtggtctac      3720
     accgatttcg ctaaagcatt tgataaagtc tcccataatg ctttattagc taaactgcag      3780
     aaaatgggat ttcactcact attacttagc tggttcaaat cttatttaga tgatcggatt      3840
     tacagagttg aatgcaatgc tgtttactct aactcatatg ttgcaacttc tggccttcct      3900
     cagggaagtg ctttgggtcc gttgctgttc atcgtcttca taaatgatat tagctattgc      3960
     ataaagaact cggaatttct gttgttcgct gacgatctta aaatatttag agctgtgaat      4020
     tgtatctccg atagtgacct tcttcaaaat gacctagaaa gggtgggaaa ttggtgttct      4080
     cgtaataatt tgcctctcaa tttatcaaaa tgtttcttcg ttaggtacag taaacgaata      4140
     attaatatcc ttttctcgta ttccattgac tcccatattc tgtccctgag aaatgaatcc      4200
     ctggacctag gagtcatgtt tgacagtaaa tttatgttca ttgaacatat taactatatt      4260
     attcccaagg cctacgctat gtatgggttt gtaaaaagaa atgccgcgca atttaaagat      4320
     ccctacacga agctaagctt atattcagcc ttcattaggt caaaactgga atatgcctcg      4380
     ttcatctgga acccgacggg tactattcac ataaatcggc ttgagcgtgt acagaaacag      4440
     tttctacgtt ttgcccttct agctttaaat ttcaatgacc cggtcccgtc ctattctgcc      4500
     aaatgtcggc ttgttcacct ttcttcccta gaagatcgga gaactaccag ttcattagtt      4560
     ttcatatgtg atttgctgac ctctgaaatc gactgccctg cactgctggg cagcataggg      4620
     ttatcggtgc ctggtagatc gttaagaacg tttgaaccat tttttgtacc ggcttacaga      4680
     gccaattatg cccacaatga gccgttgtgt agagccctgc atttttataa taagttgcca      4740
     tctcacatgc ggttggatcc atgctccccc agagatttaa tcaagaaaaa cttgtataat      4800
     tattttgcct cacttagtat ttaatttagt attagttagt agccagttaa ggttttttac      4860
     tgttggcgaa taaagaaata aataaataaa taaaataa                              4898
//
ID   CR1-15_CQ   repbase;    DNA;    INV; 3411 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-15_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3411
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 18-18 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..3369
FT                 /product="CR1-15_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MATPTPSDTAAPPFAAADLTCPGPVVGVRDRSCQTCP
FT                 TGKYPYISNTSSSERLPIFSPSTVPDSTRRLPSAEAVMVSQLMDPAPLDNP
FT                 SHRAALPSPGRSLDGTMEVPNRSDAVALPASGQPSRPGPAFGSREGVFQQQ
FT                 TPGEYSESTVFSSPDNPLACSPPRHLTIYYQNIRGMRTKTEKLRLALMSSD
FT                 YDVVVLTETWLHGNILDSEFSANYKIFRLDRNTATSSAARGGGALVAVKSD
FT                 LGAREVELANCERLEQSTVRINFHSFSLFVCGIYVRPRTTPDVYTLHAESV
FT                 QQILEKATDQDVVVVVGDYNLPDLVWVFDEDVGGFLPANASSDAEVALTES
FT                 FLANGLVQINFLLNNSNRLLDLAFVNDAAAFELLQPPNSLLPIDAPHPPFV
FT                 LKLEICAHTPASESIDPVAEEFDFKRCNFETLNSRLEAVDWSTMDTAGSLD
FT                 DAVTEFYDQLLNVLRDTVPVRARRFRCPSRTPPWWNSQLRNLRNQLRKARK
FT                 RFVNRSSWGNKVTLSYLETEFAEQQVTSYQNYIAGVQDNLQSNPKNFWSYV
FT                 KERKQVGEIPTDVSYREEKSTSPEAAANLFARFFETVHSSQDPTVPPEQLN
FT                 ELATYNINLPLLTVSVAEVKKALGSVDAAKGPGPDRIPPSVVKNCCSSLAR
FT                 PVTSIFNRSLSEGAFPSEWKVASITPIHKSGSRAKVENYRSISILSCLAKV
FT                 LEKLLVDHIYPSVKNIISEYQHGFMKQRSTTSNLMAYTNWIIRRMEKRQQV
FT                 DAVYIDFAKAFDRVPHKLTIAKLTALGLPDWVTRWLNSYLVNRSAYVKIAG
FT                 SLSTCYEIPSGVPQGSHLGPLIFVLFINDLCSRLQSCKLLYADDLKIFRRI
FT                 GDSDDVRALQEDINVLLRWCVQNGMEVNEKKCKLISFYRIRSPNLAEYNMG
FT                 RSTLERVHSIVDLGVTIDCKMEFNQHVSISVAKSYAMLGFLRRNAAGFTDV
FT                 RVLKTLYFSLVRSVLEYAVPVWAPYYAVHQQKIESIQRRFVRFAARVLPWN
FT                 DPVTLAPYTNLCALVGLPTLQHRRVLLQRLFVFDVLRNNIDCSDLLEEVHI
FT                 RVPSRELRNHQLLDIPRHTTNYGHHNPLDACCRKFNHSTILENFDFNVCKS
FT                 VFRSRILLLS"
XX
SQ   Sequence 3411 BP; 806 A; 989 C; 837 G; 778 T; 1 other;
     acgaagcaag gcactatggc gactcctact ccttccgaca cagctgcacc cccgtttgcc        60
     gctgccgact taacctgtcc cggtcctgtg gtcggagtgc gagataggag ttgccaaact       120
     tgccccacag gcaagtaccc gtatattagc aacacttcct cttccgaacg cctcccaatt       180
     ttcagcccaa gtaccgttcc cgattccacg cggcgtttgc cgtcggctga agctgtcatg       240
     gtgtcacagc tgatggaccc cgcgccgttg gacaacccat cgcaccgtgc cgcgctgcca       300
     tcaccgggac gctcgctaga cggtaccatg gaagtcccca atcgctccga cgcagtcgcg       360
     ctcccagcca gcggccagcc aagtcgtccc ggccctgcgt tcggaagtcg agagggggtc       420
     ttccaacaac aaactccagg cgagtactct gagtcaacag ttttttcttc tcctgacaat       480
     cccttggctt gcagccctcc acgacacttg accatctatt accagaacat tcgcggcatg       540
     cgaacaaaga cggagaaact gcgcctcgcc ttgatgtcca gtgactacga cgtagtggtt       600
     ctcaccgaaa cctggttgca cggcaatatt ctggactcgg agttctccgc gaactacaag       660
     atcttccgac tcgaccgaaa caccgccacg tccagcgcag ctcgtggagg aggagcactt       720
     gttgctgtca aaagcgacct tggagctagg gaggtagaat tggctaactg cgaacggttg       780
     gagcagtcaa cggttcgtat caacttccat tccttctctc tcttcgtttg cgggatttac       840
     gtccgaccac gcaccactcc cgacgtgtac accttgcatg ctgaatccgt ccagcaaatt       900
     ctcgaaaaag caacggatca agacgtggtg gttgttgtcg gggactacaa ccttccggat       960
     ctcgtctggg tcttcgatga agacgtcggt ggctttctcc ccgcgaacgc gtcgtccgat      1020
     gcagaggtgg ctctcaccga gtccttcctg gccaacgggc tggtacaaat aaacttcctg      1080
     ctgaacaact ccaaccgctt actagacctc gcctttgtga atgacgctgc ggcctttgag      1140
     ctgttacagc ccccgaactc actcttaccg atagacgccc cgcatcctcc attcgttctg      1200
     aagctagaga tttgcgcgca cacacctgct tccgaatcta tcgatccggt tgctgaggag      1260
     ttcgatttca aacgttgcaa ctttgaaacg ctgaattcaa ggctagaagc tgttgattgg      1320
     agtacgatgg acacagcggg ctcactggac gacgccgtga cagagttcta cgaccagctg      1380
     ctgaacgtgt tacgcgacac agtgccagtt cgagccaggc gatttcgttg cccttccagg      1440
     acgccgccgt ggtggaactc gcagcttcgg aacttacgca accaactgcg gaaggcacgt      1500
     aagcggttcg tgaatcgaag ctcgtgggga aacaaggtca cactctcgta cctcgaaact      1560
     gagtttgctg agcaacaggt tacgagctac cagaattata tcgcaggagt tcaggacaat      1620
     ctccagtcta acccgaagaa tttctggtcg tatgtcaagg agaggaagca ggtgggagaa      1680
     ataccaacag atgtgtcgta tcgcgaggaa aaatcgactt ctccggaggc agccgcaaac      1740
     ctatttgcac ggtttttcga aaccgttcac agctcgcaag accccacggt tcccccagag      1800
     cagctaaacg aactagcaac ctacaacatt aacctcccgt tgctcacagt ctcggttgcg      1860
     gaagtcaaga aggctcttgg ctcggtggat gcagcaaaag gccctggacc ggaccggatc      1920
     cctccatctg tcgtcaagaa ctgctgcagc tcgcttgccc gtcccgtcac aagcattttc      1980
     aaccgctcgc tctccgaagg tgctttcccg tcggagtgga aggtcgcctc aattaccccg      2040
     atccacaaat cggggagtcg cgccaaagtt gagaactacc gttcgatctc aattctgagc      2100
     tgtttggcaa aagtattgga aaagttgctt gttgaccaca tctacccgtc cgtgaaaaac      2160
     atcatctcgg aataccagca cggcttcatg aaacagcgat ctacgacgtc caacctgatg      2220
     gcgtacacga actggataat ccggaggatg gagaagcgtc aacaagttga tgccgtctac      2280
     attgatttcg ccaaggcctt cgatcgagtc ccccacaagc taactatcgc caaactaaca      2340
     gcgcttggcc tgccggactg ggttactcgt tggctcaact cgtacctggt caaccgttcc      2400
     gcctatgtga agatcgctgg ttctctctcg acctgctacg aaataccttc cggcgtcccg      2460
     caaggaagcc accttggccc gttgattttc gtgctgttca tcaatgacct gtgttcccgt      2520
     ctccagtcat gcaagctgct gtacgccgat gacctcaaaa tmttccggcg aattggagat      2580
     tctgacgacg tccgtgctct ccaggaagac atcaacgtgc tgcttcgctg gtgcgttcag      2640
     aacggaatgg aagtgaacga gaaaaagtgc aagctgatct cgttctacag gattcggagc      2700
     ccaaatcttg cggagtacaa catgggccga tccacactcg aacgcgttca ctccatcgtg      2760
     gacttgggcg tcacgattga ctgcaagatg gaattcaacc agcacgtctc catctccgtg      2820
     gccaaatcgt acgctatgct cggtttcctt cgaagaaatg ctgctggttt caccgacgtg      2880
     agggtcctca aaacgctgta cttctcgcta gttcgcagtg tgttggagta cgccgtaccg      2940
     gtgtgggcgc cgtattacgc cgtccatcag cagaagatcg agagtatcca gcgtcggttc      3000
     gtaaggtttg cagctcgagt gttgccctgg aacgaccctg tgacgctggc accctacacg      3060
     aacctgtgcg ctctggtcgg cctgccaaca ctccaacaca gaagagttct ccttcaacga      3120
     ctgtttgtgt ttgacgtctt gcggaacaac atcgactgca gtgacctact cgaagaagtc      3180
     cacatccgag ttccctcaag agaacttcgg aaccatcagc ttctcgacat accaagacac      3240
     acgacgaact acggacacca caaccctctt gacgcctgct gtagaaagtt caatcactcg      3300
     actattttgg aaaattttga ctttaatgtg tgtaaatctg tgtttagaag tagaattttg      3360
     ttgcttagtt agtaagaaac cctaaagtct gcaaagatga taaataaata a               3411
//
ID   CR1-15_DTa  repbase;    DNA;    INV; 4727 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   18-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4727
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5915-5915 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 4727 BP; 1280 A; 1024 C; 896 G; 1523 T; 4 other;
     ctctgatcag cgctcgtgtc gaccagacgt attttttcgc tatgtcttct aattcgtgcg        60
     cggagtgcaa agctgaagtc acagctgcac agcttcgcgg ttttgatgca gttcgttgtt       120
     cctctctttg tcgccgcaag ttccacactg cttgtgttga tttgccagag gatgcaatca       180
     aacttttaac taccatgcct aatcttattt ggcagtgcga cagttgcgtt gtgagcaatg       240
     attcgcattc caagacggat gaaattatga aagaacttag tgatcttaaa agcctttatt       300
     caactttaaa tgcaaaattt ctaaaagcct tcccggaacc ttctatgaca agcgtgaaaa       360
     ccaatcagcg gagagtggat aagcctctta tccctgcacc agttgcatca acatccgatc       420
     aagttaaccc ttcctcaaac cacgatcccg ttgtaccaac gaaagtggcg gaaaagaagc       480
     gcaacaagaa tcacaagaac aacaacaaga acaagaggca ctttattggt ttggctcctc       540
     cttgtgttct attcgaagct ttaccaagca aacgttttct gcacatcggc aaatttccag       600
     taaacacaca gccagaggcg ctgtgtaaat atgttgcgga aaagctgagc gttaatgaaa       660
     aattaattat ctgcaattct ttaactaaaa aagacgtgga tattaacacg ttagcattca       720
     tcaatttcaa acttggagta ccggagcagc attaccaaac ggttttcagt gatgaatttt       780
     ggccacaatc agtaaaagtg agccagttca tttatagaga gagatccaaa ccccccttgg       840
     attctacggt tgtgaatttc ttagaaggag gaccgttgcg tacttcgact ccttctaaag       900
     gtgaatcaaa aaacccccaa tagtcgacgt cactgacatt gacgtcactt tcggcctgat       960
     cttggatcct attgctcttc gtttcgcttt actaccctat tcacaacaac aacatcagcg      1020
     gtcggctttt tccccggctg cccatttatt ttctggacca gatgtcatca agctcagttt      1080
     cgacttaaga gaaacagttc atcgtgagct gtttcagctt cttcagtttc tattgcgttg      1140
     cttttgctcg catcgtacaa ttgatactct ccctaattgc gctctctctg gattggcgct      1200
     ctctattcat cattctacgc tcctgcattc gccgtttgcc ttttgcaata ttgctcgccg      1260
     cactctgcct acactcacta cctctccgct ttctgctgtt tcatcgcaga cgcttacatt      1320
     aggatggaat ggaatcttcg aaattatgtt ctctacttat tcgccgctgg agttaaatca      1380
     acattggatg ctgctatctt catattcgga ttctaatgag ctcagcgcgt ctcgtgggat      1440
     ggcgctctct tatccgaata gtctgatact cgcttcactg tgctcttcac cgcctctctc      1500
     ttttgatgtg atttcttctg cgctctttgg atggccctca cagaataggc aagcgtccgg      1560
     aggaaaatca tttacatata cctgcacttc cattcctagg aacattgatc ttaacccgcc      1620
     tataaaaata cgtacggata cgttgcgcaa agtacttctt agtacttatg atcatgcaag      1680
     gccgacatct aatctggatg ttgagagttt ctcttcaata acatgcgtcg actggcaacc      1740
     tgctagtgcc ttgtctgctg tgaattcaaa cagccatcat tcagcgaata atggcctgaa      1800
     aatatacttt caaaatatat ccggcatgag aactaaaacg caatctgtct ttatgaatac      1860
     ttctaacagt gattatgaca taatcatact ggttgaaact tggttaaatt ctaacttcag      1920
     ttcgaatgaa ttcttcgatc ctaatatatt tcaagtattt cgtaaagata gagacttcgg      1980
     agaatgcagt gcgagagagg aggtggcgtt atagtggctg ttagccgtaa attctgttgt      2040
     atggcaattc gactcgttaa tgatgactcg cttctggacc agttggcggt gacggtgtct      2100
     ggctcatccg ggaagatatc gattgtggct tcctatattc ctccgggcag tgattctgga      2160
     ctttaccagg ctcacctaga caacatttcg aacatccatg ccagcttgga ggactctgat      2220
     ggcatatgtg tggcaggaga cttcaacctc agttctgttt tctggacgtg tgacccacaa      2280
     gcagctgcta tggtgcccgg aaacgtgcat cattcacatg aaataattgt cattgatgac      2340
     tgttttagta tgggcctcac ccaaattaat aatattttca atgatttgca taagcttctt      2400
     gatttaatct tcattaattc cattgttcat tctaacgtaa ctcttgctga atttaccatt      2460
     tcaaattgtg ttgtccatca caaacccttg tgctttaaca ttgaatttta tagctttctg      2520
     ccatttattg attctaatcc tagatacata tttgatccct ctagtttgag ttccctaagg      2580
     gattgcctgc tatccctgaa ttggtgtgcc ttactatcta acccttgcat tgaaactaat      2640
     tataaaacct ttctttcaac tattagaaat actcttgaca gcatagtccg ttccagggta      2700
     cggggttcct acaggcttcc ttggtatacg aaaggactgc aaaaatacaa aaaccttagg      2760
     aacaaatatt acaagaaatt ttctaaaaca cataacccag cagatggtga gagatacagg      2820
     cagcataaac gtgagtttga gtttctcaat aaatttcttt ataaccaata catttgtgaa      2880
     gttgagcata gcttgaagga caaccctaag gcgttttggc gctttgttaa ttctaagaaa      2940
     tctcattcgt ctataccttc agctatgtct tatggtgata ttgttgcttc cactgaggcc      3000
     gatatcgcca atttgtttgc tgcgtgtttt tcctcaaaca ttgaaccttc caatgattgg      3060
     tatgatcagg aaacattaaa ttcaattcca gaaatttgca gcattggaag tctggacata      3120
     tcgtatgatg acatttctga agcaatcagt tattttgatg attccccaag gctagacttt      3180
     gatggaattt cttcattctt ccttaagaat tgcattggca gtctgtacct acctctgcag      3240
     atcttgtttt cttcttcttt gtctcagggt agattcccaa ttagatggaa aatttctaga      3300
     gttatgccgg tccataaagg aggaagtaaa tttgacattt cgaattatag gccgattgct      3360
     aaaatcggca acattgctaa actgttcgaa agaataattt tcaaaaaatt atctttctta      3420
     ataaggtctt atatagaacc taaccaacat ggcttcatgc ctggtcgatc tacgacgacc      3480
     aacttggcca tttttacgag tcactgtgta catgcatttg aggatcactc acagatggac      3540
     acgatttaca cagattttgc caaagctttt gacaaggtgt gtcactctgc ccttaaggct      3600
     aaactttcga aactaggctt tcactcctca tttcttaatt ggatagcatc gtatttggat      3660
     aaccgacgct atcatgttga aataggtggt gcattatccc atccctataa agcgacatca      3720
     ggacttcctc agggtagctc tcttggccct ttacttttta ttatttttat aaatgacatt      3780
     tgcgcgtgta tcaaattttc taacttcctt ctttatgcgg atgatcttaa aatttatagg      3840
     actgtcaaaa ctgtaaatga ttcgatattg cttcaatcag acctagatag tatcggtagt      3900
     tggtgttcca agaataattt gcctttaaac cttcacaaat gccacatcgt tcgttattcg      3960
     aaagkcctgt aaccatccca tccacttatc tcatcaataa ccaccctctc tctgttttaa      4020
     atgaaatagt tgatctgggg gtattatttg atgacaaatt tctgtttaat gaacatctga      4080
     attttatatt accaaaggca tatgcaatgt tcggctttgt taagcgaaac acggtcttat      4140
     tcaaagatcc gtattccaga ttatctgttt actctgcgtt tgtccgttcc agggttgagt      4200
     atgcttcctt tatttggaat ccctcaggaa gtgtccagat caataggctt gagaggttgc      4260
     agaaaaagtt tttaaagttt gcattgcaat ccttgcattt tactgaaccg gctccgccct      4320
     atgctagcca gtgttccctg ctgcacactt gttccttgaa ggatcgccgt gcaattgcag      4380
     gacttctttt ccttaatgat ctactggtag gtaatattga ttgtccttgt ctgttgggat      4440
     gcattaattt taatgctcct gccaggaatc ttcgtacctt gktaccattt ctggaacgtg      4500
     ctgtcaggac aaattatgct cgcaatgagc cattactaag gkctcttaga atgttcaatt      4560
     ccttgcctac aagcattaga ttcwgctggg gggccaagaa ggaactgtta aggcaaaccc      4620
     ttagggaata ttttttaatt aatattcaat aatagattta agttaatcaa ttgtagtaag      4680
     atgtagccag ataaggattt atccattggc gatataaata aataaat                    4727
//
ID   CR1-16B_CQ  repbase;    DNA;    INV; 3951 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-16_CQ;
KW   CR1-16B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3951
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 19-19 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >99%
CC   identity.
CC   This consensus is ~80% identical to that of CR1-16_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..3837
FT                 /product="CR1-16B_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGRFTKSRLEVPRAPXTVEPNHSPSSNYFSGSAARPG
FT                 PVFGHGNGAFQAATSGKYTHPLRTSPRPDALSLSSKLRXVDEEMLAVAERC
FT                 VADGPGRMYRGIEVEPRFPVTAVPFTTNTLSCLSSSQHSRPGPVNGTRSGV
FT                 SRALLSGKYMWFPRTILPPDVPEVFSQRYVPTTEPQPRLADNSAFSVPEQD
FT                 CTFQCARAEIADLPDHVDFPCFPVTITPFITANHRSDESDTSGRSHQGSEE
FT                 CPRPPYTVESSQRSSPGVSTSHQSRPDPVYGHGSGGFRPPPTGEYNQINDS
FT                 XPALNHQSLQQSKGTLSFITVYYQNAGGMRTKTKQFFLALASXDYDVIALS
FT                 ETWLQDDIVDAELSSNYNLFRQDRNGLTSDRSRGGGVLIAVKKAHDFTCTR
FT                 VLSAGYEHLEQVAVRIKARNHTVYVCCIYIRPNSPPDVYTSHGTAVQELVD
FT                 LSSNDDSIIVTGDYNLPHLAWTFDVDVNGFIPLNASTEQELALTENVVATG
FT                 LLQICSLANVNGRILDLAFVNDTLSVELIEPPKPILRTDRHHKPFILRVDY
FT                 PDIPGVATRIEDAEPDFSRCDFDRVTESLSSIDWDDILQDQDANTSTTIFY
FT                 DVLYEIVRQFVPSKRVSRNRTEKLPWWNADLRNRRNILRKARKRLFKAGTP
FT                 ENQTAVDRLEIEYELLQDSLFRDYLNRVQVDLKDNPSSFWKYVRSRKRTSV
FT                 LPTRISLNGSTAENPEDAANVFADFFSSVYEADAPSASNDYLNDLPTYDVD
FT                 FPQPEFSQAEVKSALDAVDPSKGAGPDRLPPSFIKRLSEHLAKPVSVIFNR
FT                 SLSEGTFPDEWKLAAITPIHKTGSTTAAENYRPISILSCLPKVFEVLIHEG
FT                 MYSSAQVVISEFQHGFVKKRSTVSNLMAYVSALNENLEKFKQTDAIYFDFA
FT                 KAFDKVPHTLIIAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGVQSRNFPI
FT                 PSGVPQGSHLGPLIFILFINDICQRLQSQKLLYADDLKIFRTVASTIDCVA
FT                 LQQDIDAIQEWCNLNGMKVNPSKCKSISFTRSPAPIRYDYTFDRHEMDRVC
FT                 SIRDLGLLIDRKLSFSEHVSSTTAKAFALLGFLRRNTAEFENINALKTLYI
FT                 TMIRSILEYAVQVWAPHHANQRDRLEKVQRRFTLYALRRLPWRNGVWRSSY
FT                 SDRCTLLEMVSLEKRRTFLQRMFVFDVLTGRIDCPQLREEITVHRPTRTLR
FT                 NQPLLRIPFHRTLYGYNRPIDRCCRIFNSVSDEYEPSMTRERFKRKILAL"
XX
SQ   Sequence 3951 BP; 954 A; 1110 C; 940 G; 941 T; 6 other;
     taggtttcgg awtgcgagct gttcgaatgt tccagacatc tcatctgtgt tgctgtcatg        60
     ggacgtttta ccaaaagccg tttggaagtg ccccgtgccc ccgwcacagt tgagccaaac       120
     cattcaccat catcaaacta tttttccggt tcagctgcac gtcccggccc tgtgttcggt       180
     cacggcaacg gggccttcca agctgccacc tcaggcaagt acactcatcc gttaagaacc       240
     tcaccgcgcc ctgatgcgtt gtcactttct agtaagctgc gakccgtcga cgaagaaatg       300
     ctagcagtcg ccgagagatg tgtcgctgat ggtccgggac gcatgtaccg aggcattgag       360
     gttgaacccc gcttccccgt cacagccgtg cccttcacca ccaacacgct ttcctgtttg       420
     agttcgagcc agcacagtcg tcccggccct gtgaacggga ccagaagcgg ggtcagccgc       480
     gcactgcttt caggcaagta catgtggttt cccagaacta ttctgccacc tgatgttccc       540
     gaggttttca gccaacgcta cgtgcccact accgaaccgc aaccacgact tgcagacaat       600
     tcagcattct ccgtcccgga acaggattgt acatttcaat gtgcacgtgc tgaaatagct       660
     gatctgccgg accacgtgga ttttccctgc ttccccgtca caattacgcc gttcatcact       720
     gccaatcacc gctctgatga atcagatacg tcgggacgct cgcaccaagg tagtgaggaa       780
     tgcccccgcc ccccgtacac agtcgagtca tcgcaacgtt ccagcccggg tgttagcacg       840
     agccatcaga gtcgtcccga ccctgtgtac ggacacggca gcgggggctt ccgacctcca       900
     cccacaggcg agtacaatca aattaacgac agtwgtcccg cactgaatca tcaaagtttg       960
     cagcaatcca aaggcacgct gagctttatt accgtctact accaaaatgc tggtggtatg      1020
     cgtaccaaga cgaagcagtt tttcctcgcc ctggccagcw gcgactacga cgtcattgcg      1080
     ctgtcggaaa catggttgca ggatgacatc gtggatgcgg agttgtcgtc aaactacaac      1140
     ttgtttcgcc aggaccggaa cggattgacg agcgatcgca gtaggggagg cggcgtgctc      1200
     attgcagtaa agaaggcgca tgattttacg tgcacacgtg ttctttctgc gggatacgag      1260
     catctcgagc aggttgcggt tcggattaaa gcccggaatc ataccgtcta cgtgtgctgt      1320
     atttatatac gcccaaacag ccctccagac gtctacacct cacatgggac cgccgttcag      1380
     gagcttgttg atctgtcatc taatgatgac tcaattattg taaccggcga ttacaactta      1440
     ccgcatcttg catggacctt tgacgtggac gtaaacggtt tcattccgtt gaacgcatct      1500
     acggaacaag agctggcgct gaccgaaaat gttgttgcaa cgggactcct ccaaatctgc      1560
     tcgctggcta atgtcaacgg aagaatcctc gaccttgcgt ttgtcaacga tacgctctca      1620
     gtcgaactga tcgagccgcc caaaccgatc ctcagaacgg atcgtcatca caagccgttc      1680
     attcttcggg tggactaccc cgatatccca ggcgtggcaa cgagaatcga ggatgctgag      1740
     ccggatttca gtcgctgcga ctttgaccgt gtcaccgaat ccctcagcag cattgactgg      1800
     gatgacattc tgcaagatca ggacgccaat acttcgacta cgatcttcta cgacgtcctt      1860
     tacgaaatcg tgcgacagtt cgttccctca aagcgtgtct cacgcaaccg gactgagaag      1920
     cttccatggt ggaatgctga tctgcgaaat cgtcggaaca ttctgaggaa agcacgtaaa      1980
     agattgttca aagccggcac accagaaaat caaaccgctg tcgaccgtct ggaaatcgag      2040
     tacgaattgc tgcaagactc actctttcgc gattacttga atcgggtgca agtggacctg      2100
     aaagacaacc catcgtcatt ctggaaatac gtgaggagca ggaaacgtac cagtgtcctt      2160
     ccaacaagga tttcgctcaa cggttccacc gctgagaatc cggaggacgc tgcaaacgtc      2220
     tttgccgact tcttcagtag cgtgtacgag gcggatgcac cttctgcttc gaacgattat      2280
     ttgaacgacc ttccaacata tgatgtcgat tttcctcaac cagaattctc acaagcagaa      2340
     gtaaaatccg ccctggacgc tgtcgatcca tcgaaaggtg ccggtcctga tcggctccca      2400
     ccttccttca tcaaacggct ttctgagcat ttagctaaac cagtcagcgt aattttcaac      2460
     cgctctctgt ctgaaggaac ttttcccgac gaatggaaac ttgcagcgat cacacccatt      2520
     cacaaaaccg gtagtactac ggctgctgaa aactacaggc caatctccat cctgtcctgc      2580
     ctgcccaaag ttttcgaggt gcttatccac gagggaatgt actcttccgc ccaggtagta      2640
     atttccgagt tccagcacgg ttttgtcaaa aaacggtcca cggtatccaa cctgatggcg      2700
     tacgtcagcg cactgaatga aaacctcgaa aagttcaagc aaactgacgc gatctacttc      2760
     gacttcgcca aagcgttcga caaggtaccc cacacgctta ttatcgctaa gttagaccgg      2820
     ctggggttcc caaggtggct gacagcatgg atccgttcgt acctttcggg gcggtttggc      2880
     tacgtccgtc tcggtggcgt ccaatcgagg aatttcccga ttccatctgg agtcccccaa      2940
     ggaagccatc tgggaccgct gatcttcatt ctcttcatca acgacatctg ccaaaggttg      3000
     cagtctcaaa aactgctgta tgctgatgac ttgaagatct tccgtaccgt ggcgtccacc      3060
     attgattgcg tcgctcttca acaggacatc gacgcgattc aggagtggtg taatctcaac      3120
     ggaatgaagg tgaaccccag caaatgtaaa agcatcagct tcaccagatc acccgctcca      3180
     attcggtacg attacacctt cgaccgccac gaaatggacc gmgtctgctc aatcagggat      3240
     ctcggtctgc tgatcgaccg caagctgagc ttctcggagc atgtctcttc cacaacagct      3300
     aaggcgttcg cgttgcttgg atttctgcgt cgcaacactg ctgagttcga gaacatcaat      3360
     gcccttaaaa cgctctacat caccatgatt cgaagcatct tggagtacgc tgtgcaggtg      3420
     tgggcgccgc accacgctaa tcaacgtgat cgcttggaga aagttcagcg ccgtttcact      3480
     ctttatgccc ttcgccgtct gccttggagg aacggcgttt ggcggtcgag ctacagcgac      3540
     agatgcacct tgctggaaat ggtgtcacta gaaaagcggc gaacctttct tcaacggatg      3600
     ttcgtcttcg atgttctgac cggtcgcatc gactgcccgc aactccgaga agaaatcacg      3660
     gtgcatagac caacgcggac gctgaggaac cagccccttc tgaggattcc cttccatcgt      3720
     actctatatg gatacaaccg accaattgac cgctgctgcc gaattttcaa ctccgtatct      3780
     gacgagtacg agcctagcat gaccagagaa cgtttcaaac gaaaaattct agctctttga      3840
     tgcgatgtga tttttttatg ttatttgact gtttaatttt atgttagttt ttaagatatt      3900
     cagtctgtgc gactctggtc gaagacggtg aacaataaac aacataaaca a               3951
//
ID   CR1-16_CQ   repbase;    DNA;    INV; 5651 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-16_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5651
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 20-20 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..1413
FT                 /product="CR1-16_CQ_1p"
FT                 /translation="MSATSTSNISKNTILCHACAEDVLDEYIPCQGFCNAV
FT                 FHPNCSGVKPALLKEIASHRQIFWVCKSCTNLMVDLRHRRSIQCAYEAGQE
FT                 LSLSHHNRIVEQLKLELLTVLKAELSANFAKLVASNSLTPRSSSLNKGGFR
FT                 GSGSRRLFDNNPAPPLGPNPIPPKPVTGKPGGPADVPERIVAKGFGAPAGD
FT                 DSPRFWLYLSRVSRNVTEEQITKLAIDRLGVSEIKAKRLVAKGKDVSRMRF
FT                 ISFKVGMNFDLKDKALESSTWPDGLLVREFEERSGEIFWEPTNAVNFQQNP
FT                 TPPVPPQDPRNTPTPKSTPVSMPLESKEMMTNPKDTEPTSPGSQGCSPMDL
FT                 WTK"
FT   CDS           1485..5537
FT                 /product="CR1-16_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMSSFSPGRAVESLVRVPRLPDATTSSPRYHLRTPAS
FT                 RSHQSRPGAGVGVGGGVSQPAPFGKYPSRLQHFLPDVRPTSSPCTITTAAQ
FT                 TAIVLQLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQS
FT                 RPGAGVGVGGGVSQPAPFGKYPSRLQHFLPDVRPTSSPCTITTAAQTAIVS
FT                 QLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQSRPGAG
FT                 VGAGGGVSQPAPFGKYQLSSFHTRPDARSAFSATVPSALQTSPAAPGHRNA
FT                 TSVAVRSVRLVSPCPASSITANHHTDEPRTSGRTHLGSEECPRPPYTVESL
FT                 PTSSPGVSSSQQRRPDPVYGQGSGGFRLQPSGEYNEANDSGPALNRRHFQQ
FT                 PNGPLSFITVYYQNAGGIRTKTKQFYLALASSDYDVIALSETWLQDDIVDA
FT                 ELSSNYHIFRQDRSALTSDRRRGGGVLVAVKKSHGVTSTRVLSRGYEHLEQ
FT                 VAVRVKVRNHIVYVCCIYIRPNGPPEVYASHGTAVQELLDLSSHDDSIIVT
FT                 GDYNLPHLSWTFDDDVNGFIPLNASSEQELALTENVVATGLLQICSLMNAN
FT                 GRILDLAFVNDAHSVELIEPPSSILRTDRHHKPFVLRVDLLDVPDEATGNY
FT                 EMEPDFRRCDFDLAAEALSIIDWDAILLGRDTNATTTILYDVLYEIVRQFV
FT                 PVRRIPCNRTEKLPWWNADLRNRRNILRKARKKLFRASTPENRATVEHLEA
FT                 EYESLQDSSFREYLNRVQVDLKENPSSFWRYVRSRKRSSVLPARISFNNTT
FT                 AENPADAANIFADFFSNVYETTAPAASADYLNTLPTHDLQYSQPEFSQVDV
FT                 QTALDVVDPSKGAGPDRLPPAFIKRLSAQLAKPVSIIFNRSLSEGVFPDEW
FT                 KLAAITPIHKSGSTMAADNYRPISILSCLPKVFEVLIHEGMYSAAQVVISE
FT                 FQHGFVKKRSTVSNLMAYVSALNENLEKFKQTDAIYFDFAKAFDKVPHTLI
FT                 IAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGAQSRKFPIPSGVPQGSHLG
FT                 PLIFILFVNDICQQLQSQKLLYADDLKIFRTVTSAIDCVALQQDIDKILEW
FT                 CSLNGMKVNPSKCKCISFTRSSAPIRYNYSFDRHELDRVSSIRDLGLLIDR
FT                 KLNFSEHVSATAAKAFAMLGFLRRNTAEFENINALKTLYITMVRSILEYAV
FT                 QVWAPHHANQRDRLEKVQRRFTLFALRRLPWRNGVWWSSYSDRCALLRMQS
FT                 LEQRRVLLQRMFVFDVLSDRIDSQQIRDEINVYRPVRQLRNLPMLRIPVHR
FT                 TLYGHNRPIDRCCRFFNEVSNEFSPGLPRKNFKLKIINL"
XX
SQ   Sequence 5651 BP; 1327 A; 1609 C; 1338 G; 1377 T; 0 other;
     tttttttttt tcctccgtgt aatttacagc agtttgttta ctctttctca gtgctattat        60
     attttgtcgg ttttagtgcg caacacaatt gttttcgtcg cgaaacctcg gccgatccac       120
     ttatcggacg cctatattga cggaactatt ggagtgtacc tgattatccg cgagttaatt       180
     tcgggaaagt gattaagagt ttagttctgt gtacaaagtg ccattggaga cacacagctt       240
     ctctacgtcc cccccaacac gcagttgttt ttaatcagcg ccatctattg gtgaatagcg       300
     gagttacagc tatctctgtc gtcccggttg cttacttgtt ggcgattttt cggattgtgg       360
     agcaacatct tcgtaatgtc tgcaacatcg actagcaaca tctccaagaa caccatcctg       420
     tgccatgcgt gcgccgagga tgttctggac gagtacattc cctgtcaggg gttctgtaac       480
     gcggtgttcc atccgaattg cagcggcgta aaaccagcgt tactgaagga gattgcatca       540
     caccggcaaa ttttttgggt ttgcaaatca tgcactaacc ttatggtgga cctgcgtcat       600
     cgtcgttcga tccaatgcgc atatgaagca ggccaggagt tgtcactgag ccaccataac       660
     cgcatcgtcg agcagctcaa attggagctc ttaaccgtgc tgaaagctga gctgagtgca       720
     aacttcgcca aacttgttgc gtcaaactca ctgactccca ggtcttcaag tctgaataaa       780
     ggtggttttc gcggttctgg aagtcgccga ctatttgaca acaatcctgc tccacccctt       840
     ggaccgaacc ctatcccacc caagcctgtc accggcaaac ccggagggcc tgccgatgta       900
     ccggaaagga tagtggcgaa agggtttggg gcacctgctg gtgatgattc acctcgcttc       960
     tggctttacc tttcccgcgt ctcccggaac gtgactgagg agcaaattac caagctcgct      1020
     atcgatcgct tgggagttag cgaaatcaaa gcgaagaggt tggttgccaa aggcaaagat      1080
     gtcagcagaa tgagattcat ctctttcaaa gttggtatga acttcgattt gaaggacaaa      1140
     gccctcgaat cctccacgtg gcccgacggt ctcctggtcc gtgaattcga agagcgttct      1200
     ggtgaaattt tttgggagcc cacaaacgcc gtcaactttc agcagaatcc aacgccacct      1260
     gtcccaccac aagatccaag gaatacgcca acgccgaagt ctacgccagt atccatgccg      1320
     ctggagtcaa aggaaatgat gacaaatccg aaggatacag agccaacttc accggggagc      1380
     cagggttgtt cacctatgga tctctggaca aaataacgcg cacgtccgcg ccgtttgccc      1440
     gatcttccct acactcaacc atatcgccat ccacttgccc acgcatgatg tcatcgtttt      1500
     caccaggacg cgccgtagaa agccttgtga gagtccctcg cctgcccgac gccaccacgt      1560
     cttcgccccg ctaccacttg agaacccctg ctagccgcag ccatcagagc cgtcctggtg      1620
     ctggtgtcgg tgtcggggga ggggtctctc aaccggcgcc cttcggcaag tatccttctc      1680
     gattgcaaca tttcctgcct gatgtccgtc caacttccag cccatgtacc atcacaactg      1740
     cggctcagac tgcaatcgtc ttacagctgt cagctcgagc catccagtct ttgccaggac      1800
     gcaccgtaga aagccttgtg agagcccctc gcctgcccga cgccaccacg tctacgctcc      1860
     gccaccacat gagaacccct gctagccgca gccatcagag ccgtcctggt gctggtgtcg      1920
     gtgtcggggg aggggtctct caaccggcgc ccttcggcaa gtatccttct cgattgcaac      1980
     atttcctgcc tgatgtccgt ccaacttcca gcccatgtac catcacaact gcggctcaga      2040
     ctgcaatcgt ctcacagctg tcagctcgag ccatccagtc tttgccagga cgcaccgtag      2100
     aaagccttgt gagagcccct cgcctgcccg acgccaccac gtctacgctc cgccaccaca      2160
     tgagaacccc tgctagccgc agccatcaga gccgtcctgg tgctggtgtc ggtgccgggg      2220
     gaggggtctc tcaaccggcg cccttcggca agtatcaact cagcagtttt cataccagac      2280
     ctgatgctcg ttcagctttc agtgcaactg ttccgtcggc gctccaaact tctcctgctg      2340
     caccgggtca ccgaaacgcc acctcagtcg ccgtgcggtc ggttcgtttg gtcagcccct      2400
     gccccgcgtc ttcaatcact gctaatcacc acactgacga accaaggacg tcgggacgca      2460
     cgcacctagg tagtgaggaa tgcccccgcc ccccgtacac agtcgagtca ttacctactt      2520
     ccagtccggg tgttagttcg agccaacaga gacgtcccga ccctgtgtac ggacaaggca      2580
     gcgggggctt ccgacttcaa ccctcaggcg agtacaatga agctaacgat agtggtcctg      2640
     cactgaatcg tcgtcatttt cagcaaccca acggcccgct tagttttatc accgtctact      2700
     accaaaatgc cggtggcatc cgcactaaaa cgaagcagtt ctacttagcc ttggccagca      2760
     gcgattatga cgtcatcgcg ctttcggaaa cgtggttgca ggatgatatc gtggacgccg      2820
     agctgtcgtc gaactaccac atatttcggc aagatcgcag cgccctgacc agcgatcgcc      2880
     gcaggggagg cggcgtactc gttgcagtca agaagtcaca cggggtcacg agtacacgtg      2940
     ttctttcgag gggttacgag catctggagc aggttgcggt tcgagtgaag gtccggaatc      3000
     atatcgtcta cgtgtgctgc atttacatac gccccaacgg cccaccagaa gtatacgcct      3060
     cgcatggaac tgccgtccag gagctcttgg atctttcttc ccatgatgac tcgatcattg      3120
     tcaccggtga ttataaccta ccccatctct cgtggacctt cgacgacgac gtgaacggtt      3180
     ttatcccgct gaacgcctct tcggagcaag agctggcatt gactgaaaac gttgtcgcaa      3240
     ccggactcct gcagatctgc tcgttaatga acgcgaatgg aaggatcttg gatctagcat      3300
     tcgtaaacga cgcgcactcc gttgaactca tcgagccacc ttcctcaatc ctcagaaccg      3360
     accgacatca caagcctttt gttcttcgag ttgatcttct tgacgtcccg gacgaggcaa      3420
     caggaaacta cgaaatggag ccggatttcc gccgctgtga ttttgacctt gccgccgaag      3480
     ccctcagtat tattgactgg gatgctatcc tactaggtcg agacacaaat gctacgacta      3540
     cgatcctcta cgacgttctt tacgaaatcg tgcgacagtt tgtacccgtt aggcgtattc      3600
     cctgcaaccg gaccgaaaag ctcccgtggt ggaacgctga cctgagaaat cggcgaaaca      3660
     tcctcaggaa agcgcggaaa aagctgttcc gtgccagtac acccgaaaac agggccactg      3720
     ttgagcattt ggaagcggag tacgaatcgc tgcaagactc atcttttcga gaatacctga      3780
     atcgtgttca agtagacctg aaagaaaacc catcgtcatt ctggagatat gttagaagca      3840
     gaaagcgctc cagcgtactt ccagcaagga tctcgttcaa caacactact gctgagaatc      3900
     cagcggatgc tgcaaacatt ttcgccgact tcttcagtaa tgtttacgag acaacggcgc      3960
     ccgctgcatc ggccgactac ttgaacacgc taccaactca cgatctacaa tattcccaac      4020
     cggagttctc gcaagtcgac gtacaaaccg ctcttgatgt tgttgaccct tctaaaggcg      4080
     ccggacctga ccgtcttcca cccgccttca tcaagcggct ttctgcgcaa ctggccaaac      4140
     ccgtcagcat aatctttaat cgctctctat ccgaaggtgt ttttcctgac gaatggaaac      4200
     tagcagcaat cacgcccatt cacaaatctg gtagtaccat ggctgcggat aactataggc      4260
     caatctctat cctgtcctgt ctacccaagg tttttgaggt gcttatccac gagggaatgt      4320
     actctgccgc acaggtagta atttccgagt tccagcacgg ttttgtcaaa aaacggtcca      4380
     cggtatccaa cctgatggcg tacgtcagcg cactgaatga aaacctcgaa aagttcaagc      4440
     aaactgacgc gatctacttc gacttcgcca aagcgttcga caaggtaccc cacacgctta      4500
     ttatcgctaa gctagaccgg ctggggttcc caaggtggct gacagcatgg atccgttcgt      4560
     acctttcggg acggtttggc tacgtccgcc tcggtggcgc tcaatcaagg aaattcccca      4620
     ttccatccgg tgtcccccaa ggcagccatc tgggtccgct gattttcatt cttttcgtca      4680
     acgatatttg tcaacaactc cagtcacaaa aattgttgta cgcggatgac ttgaagatct      4740
     ttcgtaccgt aacctccgcc attgattgcg tggcgcttca gcaggacatc gacaaaattc      4800
     tggagtggtg tagccttaac ggaatgaaag ttaatcctag caagtgcaaa tgcatttcgt      4860
     tcacacggtc gtccgcccca attcgttaca attacagttt cgaccgtcac gaactggacc      4920
     gcgtcagttc catcagggat ctcggtttgt tgatcgacag aaaactaaac ttttccgagc      4980
     acgtttctgc gacggcggcg aaggcgtttg caatgcttgg gtttctccgc cgtaatactg      5040
     ctgagtttga gaacatcaac gcactgaaaa cactctacat cacaatggtt agaagcatat      5100
     tggagtacgc tgtacaggtg tgggcgcctc accacgctaa tcaacgtgac cgtttggaga      5160
     aagtccaacg tcgtttcacc ctcttcgccc ttcgtcgtct accttggaga aatggtgttt      5220
     ggtggtcaag ctacagcgac aggtgtgcac tacttcggat gcaatcgctc gaacaacgcc      5280
     gtgtcttact tcagcgaatg tttgtctttg atgtcctctc ggatcgcatc gactcccagc      5340
     agatccgcga tgaaatcaac gtgtacagac cagtgcgaca gctgaggaac ctgcccatgc      5400
     tgagaattcc agtccatcgc acgctctacg gccacaatcg accaattgac aggtgttgcc      5460
     gctttttcaa cgaggtgtcc aacgagttct cacctggcct gccgaggaag aattttaagc      5520
     tgaaaatcat caatctgtga tatatttgtt gtcaatgttt tgtatgattt tattttttaa      5580
     gtttagtttt aaggtattca gtctgtgcga ttaactcgaa gacggtgtaa taaataataa      5640
     taataaataa t                                                           5651
//
ID   CR1-16_DTa  repbase;    DNA;    INV; 4966 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   26-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4966
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (26-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   Mostly a reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..943
FT                 /product="CR1-16_DTa_1p"
FT                 /translation="MSIPNCSECNSSVTAAQLLCFDAVRCSSLCRRAFHTS
FT                 CVNISPDVSKLLTNLPNLLWQCDNCLVANDSHSKIDELNEKINKLEIFCMD
FT                 LNNKFLSAIAHKPGVIQSQPQPQPQQKTNNMNNVSTRPRTLRPLAVSASDE
FT                 VHVADPLTVVKEGDWSIVRKKRRNIRKNNKTRLVGEAPSCSDLTVMQSKKY
FT                 LHVGKFAVDTEPEAVLKYVAEKLNVATETFTCFKLVKLDADLSALKFVNFK
FT                 LGVPEHLLAAVFNNKFWPISVKVGHFVQRERPKADHVALRIPTTDESSTPV
FT                 NSPSKNSQ"
FT   CDS           1131..4892
FT                 /product="CR1-16_DTa_2p"
FT                 /translation="TVTRITLSFHHAALYTQLFTSSAVCDVLSSPACETYA
FT                 RSVLFGVALSSPPAVLAQHTTDRSVLFGVALSSPPAAWAQHPLSRSVLFGV
FT                 ALSSPPAAWTQHPLSRSVLFGVALSSPPAAWAQHPSSRSVLFGVALSSPPA
FT                 ELAQYPTARSVLFGVALSSPPAAWTQHPESRSVLFGVALSSPPAAWLQHPE
FT                 SRSVLFGVAHSSPHTTLELWPTPGWLSGFNGVSLSATQLATLDCNTIYDPW
FT                 DDDLNPPIRIRTESLRRVLNGSYGVGGQKTVAAAADFTLPDYRQASMARVP
FT                 GKSPSRRIGNLLKIFFQNVSGMRTKTQSVFMNTSNSDYDVIILVETWLNPN
FT                 FNANEFFDANLFNVYRKDRDFSRMQCDRGGGVIVAVRHTFLCIAVKLENED
FT                 SLLDQLAVEVAGSSGKIVIVASYIPPGSDFTLYQAHLNNISSINDSLVDGV
FT                 GICVTGDFNLGSVVWTCDPQSLFMVPGNVHQPHEIIVIDDCYSMGLTQINN
FT                 IFNDLHRLLDLIFINSIVHSSVSLAEYTISNCDSHHKPICFNIEFYNFLPT
FT                 VNVVPMYNFDDSSLAAVSDCLVSINWVSVLSDACIETNYNNFLAALKNTLD
FT                 SIVPTKVRGCYRLPWYTKGLQKYTNLRNKFYKRFLRWGNPVDGDRYRQHKR
FT                 EFEFFNKFLYNQYISDIENSLKSNPNSFWRFVNSKKSSSSIPSTMTYKNMV
FT                 ANSGADIANLFASFFSANFEPASSWNNQEVLNNIPEFSSIGSLDITDSDIS
FT                 EALVHFDDSKKPDVDGVSSFFLKHCYTGILEPLKILFSASLAQGNFISRWK
FT                 MAKILPVHKCGCKSEISNYRPIAKISNIAKLFERIVVKKLSFHLSAYIDPN
FT                 QHGFMPGRSTTTNLAIFTKFCLQSFESHSQVDTVYTDFAKAFDKVCHSALQ
FT                 AKLSKLGFHSSLLKWISSFMVNRSYQVEVSGSVSNSYKATSGLPQGSSLGP
FT                 LLFIIFINDICFCIQSAKYLLYADDFKIYLSVNSISDTYLLQADLSKISLW
FT                 CTRNKLPLNQNKCHVVRYSKCSLSIISTYYIYDHPLLALYEIMDLGVLFDS
FT                 KFLFNHHINYILPKAYAMFGFVKRNTVLFRDPYARLSVFSAFVRSRVEYAS
FT                 FIWNPSSAVHSNRVERLQKKFLKFSLQPLHFSDPFPSYSSQCRLLHTCSLK
FT                 DRRSIAGLLFVNDLIIGNIDSPFLLSLITFNAPARNLRTMVPFFESAARTN
FT                 YARNEPLLRALRLFNSLPASIRLCWGSKKDMLRQSLREYFLCSS"
XX
SQ   Sequence 4966 BP; 1262 A; 1162 C; 1016 G; 1526 T; 0 other;
     gtcagctagc tttcaatgcg ttcggacgtg cttatctttc gctatgtcta ttccaaattg        60
     ctcagagtgc aattcgtcgg tcactgcagc ccagcttcta tgttttgatg ctgtccgctg       120
     ctcttcgttg tgccgtcgcg ccttccacac ttcgtgtgta aacatttcgc cggatgtgtc       180
     taaactgctg accaatttgc cgaatttatt gtggcaatgt gacaactgtc ttgtcgctaa       240
     tgattcccac tccaaaattg acgaactcaa tgagaaaatc aataagctgg aaatattttg       300
     tatggatctc aataacaaat tcttaagtgc gatcgcccat aaacctgggg tcattcaatc       360
     tcagcctcag ccgcagccgc agcagaaaac taacaacatg aacaacgtta gtaccaggcc       420
     gcggaccctt agacctttgg cagtgtccgc cagtgatgag gtgcatgttg cggacccgtt       480
     aactgtggtt aaagagggtg attggagcat cgttcgtaaa aagaggagga atattcgaaa       540
     aaacaacaaa acgcgtttag ttggagaggc ccccagctgt agcgatttga cagtaatgca       600
     aagcaagaaa tatttgcatg tcggtaaatt tgccgttgac accgagccag aggcggtgtt       660
     aaaatatgtg gctgaaaagc ttaatgtggc cactgaaact tttacatgct tcaagctggt       720
     caaattggat gctgacttgt cggctcttaa gtttgtcaac tttaagctgg gagttcctga       780
     gcatctcctg gcagcagtct tcaataataa attctggcca atatcagtta aggtgggaca       840
     tttcgttcaa cgagagaggc ccaaagcgga tcacgttgct cttcgaattc caacaacaga       900
     tgaatcttct acccccgtaa actccccttc aaaaaactcc caataatcgg cgtcactggc       960
     attgacgtct gttgcaattc tcaactgtat tatcaacaac aacggcagaa gcgagcggtt      1020
     aatctgcttg ctctctgcat ccatctctct catcaactca cgcaccaaca gctgcattca      1080
     caacaacaac aacaccagct gattttgccg tttgctttat gcacctctga actgttacta      1140
     gaattacgct ttcttttcat catgcagctc tttacactca gttgtttacg tcgtctgccg      1200
     tgtgtgatgt gttaagttct cccgcatgcg agacatatgc tcgtagcgtg ctcttcggag      1260
     tggcgctctc ttcacctccc gctgtattgg cgcagcatac cacagatcgc agtgtgctct      1320
     tcggagtggc gctctcttca cctcccgctg cctgggcgca gcatccatta tctcgcagcg      1380
     tgctcttcgg agtggcgctc tcttcacctc ccgctgcctg gacgcagcat ccattatctc      1440
     gcagcgtgct cttcggagtg gcgctctctt cacctcccgc tgcctgggcg cagcatccat      1500
     catctcgcag cgtgctcttc ggagtggcgc tctcttcacc tcccgctgaa ctggcgcagt      1560
     atccaacagc tcgcagcgtg ctcttcggag tggcgctctc ttcacctccc gctgcctgga      1620
     cgcagcatcc agaatctcgc agcgtgctct tcggagtggc gctctcttca cctcccgctg      1680
     cctggttgca gcatccagaa tctcgcagcg tgctcttcgg agtggcgcac tcttcgccgc      1740
     acactacctt ggagctgtgg ccaacacctg ggtggctcag cggttttaat ggagtatcac      1800
     tctcggctac acagttggca acgttggatt gtaataccat ttatgatcct tgggatgatg      1860
     atctcaaccc accaatacgt attcgtacgg aatcactgcg ccgcgttctt aatggatcct      1920
     acggcgttgg agggcagaag actgttgctg ctgctgctga tttcactctc ccggattacc      1980
     gccaggcatc catggcaaga gttcctggaa agtcgcctag ccgtagaatt ggaaaccttc      2040
     ttaaaatttt ctttcaaaat gtatctggaa tgaggaccaa aacccaatct gtcttcatga      2100
     acacatccaa tagtgattat gacgtaatca tattggtgga aacctggctc aaccctaact      2160
     ttaacgccaa cgagttcttc gatgcaaatc tgttcaacgt ctatcgtaag gacagagact      2220
     ttagcagaat gcagtgcgat agaggtggtg gtgtcatcgt ggcagtacgc catactttct      2280
     tgtgcatagc cgttaaactt gaaaacgaag actctcttct ggaccagttg gctgtcgagg      2340
     tagctggctc gtcaggaaag attgtaatag ttgcttccta cattccccct ggtagcgatt      2400
     ttacgcttta tcaggcacat ttgaataata tttccagtat aaatgacagt ttagttgatg      2460
     gtgtgggtat ctgtgtgaca ggagatttca atttaggatc tgttgtatgg acatgtgacc      2520
     cgcaatcgct ctttatggtg cctggtaatg tccaccagcc acatgaaatt attgtcattg      2580
     atgattgtta tagtatgggc ctcacccaaa taaataatat ctttaatgat ttgcataggc      2640
     tactagattt aattttcatc aattcgattg ttcattcctc ggtaagcctt gctgaatata      2700
     ctatttctaa ttgtgattct catcataaac caatttgctt taatattgaa ttttataact      2760
     ttttaccaac agttaatgta gttcctatgt ataactttga tgattccagc ctggctgccg      2820
     taagtgattg cctcgtatct attaattggg tctctgtact atcggatgct tgcattgaga      2880
     ccaattataa taattttcta gctgcactca aaaatactct ggatagcatt gtcccaacta      2940
     aggtgcgggg ttgttatagg cttccgtggt acactaaggg cctccaaaag tatacaaatt      3000
     taaggaataa gttctataaa aggttcttga gatggggtaa tccggtggat ggcgatagat      3060
     acaggcaaca taagcgagaa tttgagtttt ttaacaaatt tctatacaat cagtacattt      3120
     ctgatattga aaatagctta aagtctaatc ctaattcgtt ctggcgcttc gttaattcta      3180
     aaaagtcatc atcatccatc ccttcaacta tgacatataa aaatatggtc gctaactctg      3240
     gggctgatat tgccaactta tttgcttcct ttttttctgc caacttcgag cccgcgtcta      3300
     gctggaataa ccaggaagtc ctaaacaata ttccagaatt cagtagtatc ggctcccttg      3360
     atataactga ttccgacatc tctgaagctt tagttcactt tgatgattct aagaagcccg      3420
     acgttgatgg agtatcttcg ttctttctaa aacactgcta tactggtatt cttgaacctc      3480
     ttaaaatcct tttttctgcc tctctagctc agggaaattt tatatctaga tggaaaatgg      3540
     ctaaaattct accggtccat aaatgtggat gtaagtctga gatctccaac tacaggccta      3600
     ttgccaaaat aagcaatata gctaagctgt tcgagagaat cgtagttaaa aagttatctt      3660
     tccatttaag tgcctatatt gacccaaatc agcatgggtt tatgcctgga cgttctacga      3720
     ccacgaatct agctatcttc acaaaatttt gtttacaatc ctttgagtcc cattcgcagg      3780
     tggacacagt ttatactgac tttgccaagg cttttgataa ggtctgccac tctgccttac      3840
     aagcaaagct atccaagctg ggctttcact cttcacttct caaatggatt tcatctttca      3900
     tggtaaaccg atcctatcag gttgaagtca gtggatctgt atcaaactca tataaagcga      3960
     catctgggct tcctcaggga agttctctgg ggcccttgct ctttatcatt ttcattaatg      4020
     acatttgctt ctgcattcag tcagccaaat atcttctcta tgcagacgac ttcaagattt      4080
     acctttcggt gaattcgata agtgacactt atttgctgca ggctgatcta agcaaaatta      4140
     gtttatggtg tactcggaac aaactgccac ttaatcaaaa caaatgtcat gtggtccgct      4200
     atagtaaatg ttcattatct attatttcaa cgtattatat ttacgatcac ccactccttg      4260
     cgctgtacga aattatggat cttggggtcc tctttgatag caaattcctt ttcaatcacc      4320
     acattaatta catcttgccc aaagcatatg ctatgttcgg ttttgtcaaa cgtaatactg      4380
     tactgtttag ggacccgtac gccagactgt cagtgttttc tgcatttgtt cgctcaaggg      4440
     tggaatatgc ttcttttatt tggaatccct caagcgcagt gcatagcaat agggttgagc      4500
     ggcttcagaa aaaatttctg aagttttcac tccagccgtt gcatttttct gatccattcc      4560
     catcttactc cagccaatgc cgcctactac atacttgtag tcttaaagac aggcgttcaa      4620
     tagcgggcct acttttcgtg aacgacttaa ttattggtaa cattgatagt cctttcctat      4680
     tgagtttaat tacctttaat gccccagcca ggaatctccg taccatggtc cctttttttg      4740
     aaagtgctgc taggaccaat tatgctcgga atgagccact tttaagggct ttgcgtttat      4800
     ttaactccct accagccagc atccggttat gttggggatc caagaaggat atgcttaggc      4860
     aatcacttag ggaatatttt ttatgtagtt cttagtctta gttttaagtt tataacttac      4920
     tagccagata aggatttaat ccattggcgg aataaataaa taaata                     4966
//
ID   CR1-17_CQ   repbase;    DNA;    INV; 1715 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-17_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1715
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 21-21 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1648
FT                 /product="CR1-17_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="SSSAKEAAQLCADFFKTTFVQHEDPVSDHHLRFVRPQ
FT                 DLTILQPRLTRQDVLRALSQVNTKKGPGPDRLSPLFLKSCAGSLAHPVSIL
FT                 FNLSLQTGIFPSVWKTAAMVPIHKSGNLHNVENYRGVSILSSLAKLLELLV
FT                 LNAMKEATNPILSDYQHGFRKARSTLSNLMVYVPYVSKALGNRTQVDSIYI
FT                 DFAKAFDRLPHKIIISKLAKLGLPDWLLTWLSSYLENRKAYVKHGRSCSKL
FT                 FSVTSGVPQGSHLGPILFNLFINDVCEVIKSEKVMFADDLKFYREVYNTKD
FT                 CAELQDDLSAMIEWCSANGMQVNASKCKVLSFYRGNSPILYRYLSDGKELE
FT                 RVESIKDLGIVVDKKLTFKEHLSATVAKARTTLGFISRNTQEFKDFQAIKC
FT                 LYLTLVRSILEYGVQIWAPRLIGDANLYERVQRTATRMIIRKLPSNHPVRQ
FT                 AHYEERLQFLRMEKLSLRVSFLRRLFLFDVVNGNSDCQALIALLPPQAPER
FT                 NRRGDVLFRIPNDGWRSYFNPFYECCKCFNSVCVKFTNGMSKLSFKSRIKG
FT                 ID"
XX
SQ   Sequence 1715 BP; 468 A; 396 C; 392 G; 459 T; 0 other;
     atcttcgtct gctaaggaag ccgctcagct gtgtgcagac ttcttcaaaa ccacctttgt        60
     tcagcacgag gatcctgtct ctgatcatca tctcagattc gtcagaccac aggacctgac       120
     tatactgcag cctcgtctta cacgacagga cgtgttgaga gcactttcgc aggtcaacac       180
     caagaaagga cccggtccag acaggttgtc gcccttgttt ctaaagtctt gtgccggatc       240
     gcttgcccat cctgtaagca tcttgttcaa cctttcgctt caaaccggca ttttcccttc       300
     tgtgtggaaa actgcagcca tggtccccat tcataaaagc ggaaatttac ataacgtgga       360
     aaactatcgt ggtgtttcta tactgagtag cctggcgaaa ctgttagaac tgttggtgct       420
     gaatgcgatg aaggaggcaa caaatcccat cttgtctgac taccagcacg gctttaggaa       480
     ggccagatct actctctcca acctgatggt ctacgttcca tatgttagca aagccctagg       540
     aaaccggacc caagttgatt caatctatat cgactttgca aaagcgtttg atcggctgcc       600
     gcataagatc atcatcagta aactggccaa gcttggtctg cctgactggt tattgacgtg       660
     gttgtcttct tacctggaga accggaaggc atacgtcaaa catggtcgct cctgctccaa       720
     gcttttctcg gttacatcag gagtccccca gggtagccat ctaggtccga ttctatttaa       780
     cctgtttata aacgacgtgt gcgaagtcat caagtcggag aaagttatgt ttgccgatga       840
     tttgaagttt tatcgagaag tctacaacac caaagactgc gcagaactcc aagatgacct       900
     aagtgcaatg atcgagtggt gcagcgcaaa cggaatgcag gtcaacgcta gcaaatgcaa       960
     ggtcctgtca ttttatcgtg gaaactctcc catcctctat cgttaccttt ccgacgggaa      1020
     ggagctggaa cgtgtcgagt cgattaagga tctcggcatt gtagtcgaca agaagctgac      1080
     tttcaaggaa catctctcgg cgacagtagc gaaggcaagg actacattgg gatttatttc      1140
     tcggaacacc caggagttca aggattttca agcgatcaag tgtttgtact tgaccctagt      1200
     ccgcagcata ctagagtatg gcgtacaaat ttgggccccc aggctgattg gagatgcaaa      1260
     cttgtacgaa agagtgcaaa gaaccgcaac gaggatgatt atccgcaaac ttccctccaa      1320
     ccacccagtg agacaggctc actacgagga gagactccaa tttctgagga tggaaaagct      1380
     ctctttgcgg gtttcattcc tcaggcgtct tttcttattc gacgtagtga acggaaactc      1440
     ggactgccag gcactaatag ctttgcttcc gccgcaagct ccagagagaa atcggagagg      1500
     tgatgttctc tttagaatcc cgaacgatgg ctggagaagt tattttaacc ctttttatga      1560
     atgttgtaaa tgttttaatt ctgtctgtgt caaatttacc aacggaatgt ccaaacttag      1620
     ctttaaaagt agaattaagg gtatagatta aattcagtct gtggatattt tttgtatcaa      1680
     agacggtgtg actaaaataa ataaaataaa ataaa                                 1715
//
ID   CR1-17_DTa  repbase;    DNA;    INV; 4445 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4445
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5934-5934 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..1464
FT                 /product="CR1-17_DTa_1p"
FT                 /translation="MDTFVCSINNCHQLIRADQSKLTCWLCEKMAHTKCAG
FT                 YTGRTSDDLAKGHNLLYCCDPCLLVAQEMRSFMRQTKGGLKSLINSFGVAR
FT                 DSFRRADDLLSALDSQFNSLKLIDESPKRKKATGGRQPKENTPQPPESNKQ
FT                 SSTTNQLSTVANPQMLLRSAAKKDLDQLESVSSVVDPPVAPPITNNLSPPG
FT                 NVESGLPAQVGAAETQSAVPKPLSVVQPKKQIFISRLSPDQTASEVLDYIQ
FT                 HKTNAKNIKVEKFNFTYARDTSSFKIFVPNDLFSTICSEAFWPDLMVVKEF
FT                 ETRNTNKRKRPVQTRLPNQGQSSAASSSSSSTLSSSSKN"
FT   CDS           join(1416..2330,2320..4296)
FT                 /product="CR1-17_DTa_2p"
FT                 /translation="CGIFIFIFYPIFVFKKLKTSLILSYQNTRGLRSKLSK
FT                 LYSDSLSFASHIIVFTETWLKEEILNSEIFPGKYTTYRHDRPSRRGGGVLI
FT                 AVNSTLTSEVVTFEEFYNIEFICVRLSFPGSFIYITCSYIPPASEFPDYLN
FT                 HLFAIQSVSNKLTDRDQLLVLGDFNIPGTSWSTDEQSNVLLPLAQHDFIEG
FT                 LLDLSLSQINNIKNSLGRLLDLCFVSNPDRVFLSKIAPLTQPEDPYHPAFE
FT                 VSIDTGTVIDAKSEKSTKXLLCFRKADFXMLNSYLSAFDWSDLYXCHNMDD
FT                 AINIFYSTVNSFFIRFFNSCVPLYYPSVSTKPPWFSKELTHLRNVKSRLYR
FT                 KYKDTGSQSIFSRYLSARSSFTVLNALCYKNYLNRCKIQFSQDPKQFFNFV
FT                 NTKRKSTNYPSSLSFENMTATTDQAIADLFAQFFQTTYSPSSHCTRPYSYT
FT                 VSKSNLIFCPTLNESALLIDLQKVKPVYSPGPDGIPGCVLRYCAEALCKPL
FT                 LKLFTLSLETSQFPSMWKESFVIPLHKKGNKLEANNYRGISKLSAIPKLFE
FT                 NIITPHLQHLCRSVISPCQHGFMKRRSTITNLLELTSFVIKGFKNNFQTDV
FT                 IYTDFSKAFDSVNHLLLVRKLDLIGFPVDLLRWISNYLKGRTQRVLFKNXL
FT                 SCTLQVTSGVPQGSHLGPLLFTLFINDLPSVISHSRVLMYADDVKLCLQYK
FT                 DTFCQSDLQSDLNSFQTWCSDNSLNLNGSKCKVMTFCRVTPQYAIYTLSES
FT                 TLDRLDLVNDLGVLLDPRLKFTDHISSMVNKARGALGFIKRWSKEFDDPYI
FT                 TKTLFISLVRPILEYGSPVWSPQYGIHIDRIESVQKNFLLFALRRLNWDAN
FT                 RILPSYSSRLLLINLPSLTNRRTMLGTVFIYNLIRGEIDSPDLVGRLNFFV
FT                 PSRLTRNYIPLILNHCRSNYDMHEPFRVLCSDYNRLYPIISNSDSLPLLKR
FT                 LILNFLAQN"
XX
SQ   Sequence 4445 BP; 1235 A; 981 C; 787 G; 1437 T; 5 other;
     cgacttccaa agtgaacggt tgtgtttttt tcgcgctccg aatttttatt tgttttcgtg        60
     tttaccttta gacggtttta attaaaactt aaatattcgg tccctaattt gatttatcat       120
     attacttctt atatttcgcg agtgaattta ctctattctg tgcacaatct cattaaaaca       180
     atttccaatt ttaatattgt gttctgtgtt ttttgttttt gtgatttctt ttgcctttcc       240
     tttgtgcggt gtccgtaaaa gctacagtgc agtttgtgtt gttgttttct gcattcgcat       300
     taactgcatt acgctcccgc tctcccgcac tctcgcattc tctctcwact tttccctctt       360
     tcgaaattta aagcgtgcgg agtcggtgct cttgcggtac ttttaactgc tcgttcgcaa       420
     atttcggtcc ctacatttct gtttggtaca gtgggcaaaa tatttacaat tatggatact       480
     tttgtctgct ctattaataa ttgccatcaa ttaatcagag ctgatcagtc aaaactgacc       540
     tgttggctgt gtgaaaaaat ggctcatacc aagtgtgccg gctatactgg ccgaaccagt       600
     gatgacctgg ctaagggtca caatttactt tattgttgtg atccttgtct tctagttgcg       660
     caagagatga gatcttttat gcgccaaacc aaaggcggct taaagagttt aatcaatagt       720
     tttggtgttg ctagagatag ttttcgccga gcggatgatt tactctcagc gctggactct       780
     caatttaata gccttaagct aattgacgag tctccaaagc gcaaaaaggc cactggtggc       840
     aggcagccta aggaaaacac cccgcaaccc ccggaaagta ataaacagag ctccacgacg       900
     aatcagctgt cgaccgtagc aaatccccaa atgttgctac gatcagctgc taaaaaagat       960
     ttggatcaat tggaatccgt atcatccgta gtagaccccc ctgttgcccc gcccattact      1020
     aataacttgt cacctccagg gaatgttgag tctggtctac cggcacaagt tggcgctgca      1080
     gaaactcaat ccgcagtacc aaaacctctt tcagtggttc aacccaaaaa acaaatattt      1140
     atttctcgtc tttcgcctga ccaaacggca tccgaggtgt tggactatat acagcacaaa      1200
     acaaatgcca aaaacattaa agtggaaaag tttaatttca cttatgcgag ggacacctca      1260
     tcttttaaga tctttgttcc gaacgatctc ttttcaacca tttgctcaga agctttctgg      1320
     ccagatctta tggtggtaaa ggagttcgaa actaggaata caaataaaag aaaaagaccc      1380
     gtgcagacta gactccccaa tcaaggccag agtagtgcgg catcttcatc ttcatcttct      1440
     accctatctt cgtcttcaaa aaactaaaaa ctagcttaat tctttcctat cagaatacga      1500
     gaggcttgcg cagtaagcta tctaaattgt attcggatag tctttctttt gcttcccata      1560
     ttattgtatt tacagagacc tggctaaaag aggagatctt aaactccgaa atttttcctg      1620
     gtaagtacac cacctatagg catgaccgtc catccagacg aggcggtggt gttttaattg      1680
     ccgtgaactc aactctcacg tcagaagtgg tcacatttga agaattttat aatatagagt      1740
     tcatatgtgt aaggctgtcg tttcccggta gttttatata tatcacctgc tcgtatatac      1800
     cgcctgcatc tgaatttcca gactacttaa atcatctttt tgccatacag tcagtgtcga      1860
     acaaactgac cgatagagac caacttttag ttctaggaga ttttaatatc ccgggaacat      1920
     cgtggtcaac agatgaacaa tcaaatgttt tacttccact agcccagcat gactttattg      1980
     aaggcttgct agatttgtca ttgtctcaaa ttaacaatat taaaaattca ctaggtcgtt      2040
     tattggacct atgtttcgtt tcaaatccgg accgcgtatt tctatccaag atagcacctc      2100
     ttactcaacc tgaagatcca tatcatccgg cgtttgaggt ttcaatcgac actggtactg      2160
     tgatagatgc aaaatcagag aagtctacta agsgactact ttgttttcgc aaggccgact      2220
     tttkcatgct aaactcttat ttatctgcct ttgattggtc cgatctttac kcatgtcata      2280
     atatggatga tgcgataaat attttttatt caacagtaaa ttcgtttttt taattcttgt      2340
     gttccgttgt actatccgtc agtctccacc aaaccacctt ggttcagtaa agagctgaca      2400
     cacctaagaa acgtaaagtc cagactctat aggaaatata aagataccgg ttctcaatct      2460
     attttttcta gatacttaag cgctcggtct agttttaccg tgcttaacgc tctgtgttac      2520
     aaaaattatt tgaaccgttg taagatccaa ttctctcagg atccgaaaca gttcttcaat      2580
     tttgttaaca ctaagcgtaa atccacaaat tatccttcct cgctatcttt tgaaaacatg      2640
     acagcaacaa ctgatcaggc aatagccgat ctatttgctc agttttttca aacgacatat      2700
     tctccttcat ctcactgtac acggccttat tcttacactg tatccaagtc gaacttaata      2760
     ttttgtccca cattaaacga aagcgcccta ttaattgatc tccaaaaagt caagcccgtc      2820
     tattcacctg gtcctgatgg aattcccggc tgcgtgctta gatattgcgc agaagccctt      2880
     tgcaaacccc ttctcaaatt gtttaccttg tctttagaaa cgtctcaatt tccttctatg      2940
     tggaaagaat cgtttgtgat tcccctccac aagaaaggta ataaattgga agcaaacaat      3000
     tatagaggca tatctaaatt gtcagctatc ccgaagcttt ttgaaaatat tattacacct      3060
     catttgcagc acctatgtag gtcagttata tctccatgtc aacatggttt tatgaaacgt      3120
     agatcaacaa ttactaacct tttggagctc acttcatttg tgataaaggg attcaaaaac      3180
     aattttcaaa cagacgtcat ctacactgac tttagtaaag catttgactc cgtaaaccac      3240
     ctacttctgg ttagaaaact cgatttaatt gggttcccag ttgatctttt gagatggatc      3300
     tcaaattatt taaaaggcag aacgcaaagg gtacttttta aaaattstct ttcttgtaca      3360
     ctccaggtta cctcgggtgt cccacaaggg agtcacttgg ggccgctact ttttacttta      3420
     ttcataaacg accttccatc agttataagt cactctcgtg tacttatgta cgctgatgat      3480
     gtgaaattat gcctgcagta caaggatact ttttgccagt ctgatttaca atccgattta      3540
     aatagtttcc aaacatggtg ctccgacaat tcgctgaatt taaatggctc taagtgtaag      3600
     gtgatgactt tttgtcgtgt tactcctcaa tatgcgattt acacgctgag tgagagcact      3660
     ctggacagat tagacctagt caatgatctt ggtgttcttt tggacccaag actaaagttc      3720
     actgatcaca tttcatccat ggtaaataaa gctaggggtg cgcttggctt tattaaaagg      3780
     tggtctaagg aatttgatga tccttatatt actaagacct tattcatctc gctcgtccgg      3840
     ccgatacttg agtatggatc acccgtctgg agtccccaat acggaattca tattgaccgt      3900
     atcgaatccg tacaaaagaa ctttttactt tttgccttaa ggcgcctaaa ctgggatgca      3960
     aaccgcattt taccttctta ttctagtaga ttactcctaa ttaacttacc ctccctaacc      4020
     aaccgtagaa cgatgcttgg aactgtcttc atttataacc ttattcgagg tgaaattgat      4080
     agccccgact tggttggacg acttaacttt tttgttccaa gtagattaac tagaaattac      4140
     attcccttaa ttttaaacca ctgtagatct aactatgaca tgcatgaacc tttcagagta      4200
     ctatgttctg actataatag actttatcct attatatcaa attctgactc tctgcctctc      4260
     ctaaaacgat taatattaaa tttcctagca cagaattaga tcctactttt tttcctcgaa      4320
     ctatattttt attttctaca tcgcgtctat catctcgcga atcgtgccgt acgatacacg      4380
     gcagcgcccc tcggtcggtt gggcgggagg tgtggccgtg ggactccgcg cgaaaaaaaa      4440
     aaaaa                                                                  4445
//
ID   CR1-18_CQ   repbase;    DNA;    INV; 3242 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-18_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3242
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 22-22 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3001
FT                 /product="CR1-18_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ADGPXRTSTPIPGSTTTLSNVPPVSAAPTHAEQSGVT
FT                 PVVDERLLLYYQNVAGLNTKISDYALAISDAIYDLYAFTETWLNEDTLSHQ
FT                 IFGPGFHVIRADRSAANSVKTSGGGVLLAVRSNLRPRQLSPPHCSALEQIW
FT                 VALPLASTTMFICVXYIPPTHTNNSEIISQHCDSLSWISSQMKPNDSILII
FT                 GDFNLPCLRWTLNPAGFFIPDAKHSTINSTVSQLLDDYSIANLGQLCGIQN
FT                 NYGNVLDLCFASIGMSTSCNLTQAPSPLLRACRFHQPLLVSIECRVHAFRD
FT                 TSSQFFYDYRRGNFQGMNEFLKNVDWNHLLADRDANSAAVAFTEVVLRAIN
FT                 IFIPKKLHLPACHPAWSNDQLKRLKTQKRAALKKFNKHPTRRWKVQYNSIN
FT                 RKYSRLNNTLFLRYQRXIQHRLKQNPKQFWNHVNSQRKETGLPSVMELDSR
FT                 EASSPIAICELFRSQFSSVFTNEDLDDTTVQQAASNVPDRDTIAQHPLVDP
FT                 DTVSRTCSALKYSTSSGPDGIPAAVLKSCSDSLALPLSKLFNISLKSGVFP
FT                 LSWKKSYIFPVHKKGPKRNVRNYRGIAALCAVSKLFELIVLDHIKLNCNNY
FT                 IAQEQHGFMPKRSTCSNLVAYTSFISQSMQKRQQVDAIYTDLSAAFDKINH
FT                 RIAFAKLERLGFCGSFLKWLCSYLSDREMCVKIGDVLSAVFAVFSGVPQGS
FT                 HLGPIIYLLYMNDVHLLLKCHKLSYADDIKLFAVINSSNDALLLQDQLNIF
FT                 AHWCDDNRMVLNASKCSVITFTRKRSTISFDYNLSNTSLSRSSSIKDLGVV
FT                 LDCQLSFIEHISYTVSKASKVLGFVFRVAKHFRQVSCLKALYCSLVRSTLE
FT                 YCSVVWAPFYQNGIERIEKVQRKFTRYALRHIPLVDPLNPPSYADRCNSLG
FT                 LDLLSVRRDVAKAIFVSDLLKSSIDCPEILEQVNFYIQRRTIRSHQFIRIP
FT                 RASTNYGRNAAVSSMCRVFNDCYVHFDFHLSRNVLRKLFLNHFKT"
XX
SQ   Sequence 3242 BP; 825 A; 849 C; 643 G; 922 T; 3 other;
     ggccgacggc cccwttcgca cctcaacccc aattcctggc tcaaccacaa cactatccaa        60
     cgttccccca gtatcagctg ctcccaccca tgcagaacag tccggggtta caccagtagt       120
     agacgaacgt cttttgttgt actaccagaa tgtcgcaggt ttaaacacga agatctcaga       180
     ttatgctctt gccatctccg atgccatcta cgatctgtac gccttcacag agacgtggct       240
     aaatgaggat actctctcgc atcaaatatt cggtcctggg ttccacgtaa ttcgtgccga       300
     tcgttccgca gcgaacagtg taaaaacttc cggtggtggt gttctgctag ctgttcgttc       360
     gaatctgcgc cctcgtcagc tgtctccgcc acactgctca gctcttgagc aaatctgggt       420
     tgcgctaccg cttgcctcca caactatgtt catttgtgtt ttwtacatcc cacccacgca       480
     cacgaacaac tctgaaatca ttagccaaca ctgtgattcc ctttcttgga tatcatctca       540
     gatgaaacca aacgatagca tcttgataat aggcgatttc aacctcccct gcctaagatg       600
     gactcttaat ccggcagggt tcttcatacc ggacgccaaa cactctacca tcaacagtac       660
     tgtctcgcaa ctgctcgacg actacagcat agcaaacttg ggtcaacttt gcgggataca       720
     aaacaactat ggcaatgtcc tcgatttatg tttcgctagc attggaatgt ccaccagttg       780
     caatctcacc caagctccat caccattact tcgtgcttgt cgattccacc aacccctact       840
     cgtttcgatc gagtgcagag tccacgcttt tcgcgacacc agcagccaat ttttctacga       900
     ttatcgtaga ggaaacttcc aaggcatgaa cgaatttctc aaaaatgtcg attggaacca       960
     ccttctagct gaccgtgatg ctaattcagc tgctgttgct ttcactgagg ttgtgttacg      1020
     agctatcaac atcttcatcc ccaagaagtt acacctgcca gcgtgtcatc cggcgtggtc      1080
     caacgatcaa ctgaaacgcc tgaaaactca gaaacgggca gccctcaaga agttcaacaa      1140
     gcacccaacg cgtcgctgga aggtccaata caactctatc aaccgaaagt acagccgctt      1200
     gaacaacact ttgttcttga gataccagcg cmgcatccag catcgcctaa agcagaaccc      1260
     gaagcagttt tggaaccacg ttaacagcca gaggaaggaa actggcctac caagcgtcat      1320
     ggaacttgac agcagagaag catcttcacc aattgccatc tgcgaactgt ttcgctctca      1380
     atttagcagc gtattcacta atgaggattt ggatgataca acggtacaac aagctgcatc      1440
     aaacgttcct gatcgcgata ctattgccca gcacccactc gttgatcccg acactgttag      1500
     ccgaacttgc agcgctttga agtactccac cagcagcggt ccggatggca tccccgcagc      1560
     tgttttgaag agctgctctg acagtcttgc tctccctctt tcgaagctgt tcaacatttc      1620
     cctcaaatct ggcgtgttcc cactgtcctg gaaaaaatcc tacatatttc cggtacataa      1680
     gaaaggacct aagcgaaatg ttcgaaatta tcgaggtatt gctgctctgt gtgccgtcag      1740
     caagttgttt gagttgattg ttcttgacca cattaaactt aactgcaaca actacatcgc      1800
     tcaagagcaa catggtttca tgccaaaacg ctcgacgtgc tccaaccttg ttgcctacac      1860
     ttcctttatt tcccaatcta tgcaaaaacg ccagcaagta gatgccattt acacagatct      1920
     ctccgccgct tttgacaaga taaatcatcg gattgctttt gctaaattgg aaaggttagg      1980
     cttttgtgga tcgtttctta agtggctgtg ctcgtacctc tctgaccgtg aaatgtgtgt      2040
     caaaattggt gatgtcttgt ccgcagtttt tgctgttttc tccggtgtac ctcaaggaag      2100
     tcatctcggt ccaatcatct acctgttgta catgaacgat gtccacctgt tacttaagtg      2160
     tcacaaactg tcgtatgctg atgatatcaa gctctttgct gtcataaact ctagcaacga      2220
     tgcgctcttg ctgcaagacc aacttaacat cttcgcccac tggtgtgacg acaacagaat      2280
     ggtccttaac gcctcgaaat gctctgtgat tacctttacc cgcaagcgat cgacaatatc      2340
     ctttgactat aatctatcaa atactagtct tagtcgttcg tcatctatca aagaccttgg      2400
     tgttgtgtta gactgtcaat tgtcctttat tgaacatatt tcctacaccg tctctaaggc      2460
     atccaaagtt cttggttttg tttttcgtgt ggctaaacat tttcgtcaag tttcgtgttt      2520
     gaaggcactt tattgctcac tggttcgctc gacactagaa tattgttcgg tggtctgggc      2580
     tccgttctac caaaacggta tcgagcgaat tgaaaaggtt caacggaagt tcactaggta      2640
     tgcgcttcgc cacatccccc tagtggaccc actaaatcca cctagctacg cagatcgctg      2700
     caattccctt ggtcttgacc ttctatctgt tcgtcgtgac gtagctaaag caatcttcgt      2760
     gtctgatttg ttgaagtctt caattgactg tcctgagatt cttgagcaag tcaacttcta      2820
     cattcaacgc cgtacgatca gatctcacca attcattaga attccacgcg catcgaccaa      2880
     ctacggtcgc aacgcggccg tgtcgagcat gtgtagagtc tttaacgatt gctacgtgca      2940
     ctttgacttc catttgtctc gcaacgtact ccggaaactt ttcctaaacc attttaaaac      3000
     ttgacccatc gctaccagaa gctttctact tgtgatatcc aactgtgatc ttagtttagg      3060
     ttaggattag ggaaagtttt atttgtgttc tatgtattag tttaagaaat cttgtatcat      3120
     tggagtttgt aaacttgttg atgcgttaag atgaggtggt ttttatgcct tcttgagaat      3180
     gtgtctgaca cagctcaagg gggctttttg cccaccaaaa taaaaaatga aatgaaatga      3240
     aa                                                                     3242
//
ID   CR1-18_DTa  repbase;    DNA;    INV; 4621 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   02-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-18_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4621
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5916-5916 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4621 BP; 1241 A; 1029 C; 884 G; 1458 T; 9 other;
     agtctctgat cagctttcgt tgcattcaga cgcgtttctc cttcgctatg gacttctatt        60
     cgtgttccga gtgcaaagct gaaattacag ctgcacagct tcgtggtttt gaggcggttc       120
     gctgcgcttc tctttgtcgc cgtacatttc acacagcttt tgctgatttg cctgatgagg       180
     cawttaaaat tcttactaat atgcccaatc taatgtggca gtgtgacagc tgtgttgtgg       240
     gcaatgattc acactccaaa atcggagaag ttatggaaga acttcaggcc ctaaagagtc       300
     tctataatga tttwaattcc aaatttctaa aggcctttcc cactatggct actgataatc       360
     ctaatgtcag tcagcgtaaa aaagtggtga aacccttggc tccagccccg ttggctgccc       420
     gtcaggcgga ctgtgcggac ccggtacccc ttccccctgc accggctatt gctaaaaacc       480
     ataagaagaa tcataggaac aaaaggcaca tagttggtca ggctgccagc tgtgagcaac       540
     tcgaagttgt gccgagcaat aaatttttgc atattggcag attcagagct cacgtcaaat       600
     cagaaacggt gtgtgaattt gttgcgacca agctaggcgt ggattcagcc agcataatct       660
     gcaagccgtt agtaaaaaac ggtgtagacg tctcttcact gcaattcgtg aattttaagc       720
     tgggatacca gagcaacact ttcggccgcg tatagtgatg agttctggcc aattcaatca       780
     aagttagccg attcatacac agggataggc caattgttga cgataaaatt ctggacttgg       840
     ataatcaaca atcatcagtc tcaaaaaacc cccaataatc ggcgccactg gcgtcgatgt       900
     ttttgcggga catttttccg atgcacctca ttctgcttcg ttctcacaat atcagcggtc       960
     gttggtttca ccagctgctg gttgcattcg ccggtcatct ggactcattg ccgctctcag      1020
     tgcactcttt gttgacgtgc gctcttcaac gataaaccaa caacaacgtc agctggagct      1080
     ttcgttgtcc gctttgtgca aacttcgcct aacacctgcg actgcttcga caacttacgc      1140
     tgctctcgga gcggctctct cttcttctgc tacgctctca acctttctac aacaactgca      1200
     gctcgagcat tcgtcatttg ctttgtgcga cattcgccca atgcaattgc tcttcattat      1260
     cacacgttca tcatttatcg ccatgcttat aatgcaccgt acgcagcagc agtctatgtt      1320
     ttcgccagct gctttaagag ttgctgtgct ctctcttggg gccatatttg gaaactctct      1380
     tcaacgccgt catctggaag ttttaggaga ctctggctcg ctatcatcat ctggtctgga      1440
     gttacttctc ttcaatgggg cttaagagtt cggccatcgc tccctattaa ttggttctct      1500
     tcaacttcat cgcaatcttt cggatacgac tctatggatt gcattccgaa cccatgcgtt      1560
     gacgatcagc ttccaatttt tatccgcact acaacaattc ttaagattct gtgtaagagc      1620
     caaggaagtg gtgggacttt gctggatagg ccttcggcgg acgtgtgccc tgtagcggag      1680
     aacatcattg atagtgaagt ccagatcgaa aaggcaagcc ctaacaatam atctttcagt      1740
     atctatttcc aaaacattgc tggcatgcgc accaaatcgc agtccctctt cttggcaact      1800
     tcaaattgtg attttgatgt aattgtcctt gttgaaactt ggctcaacat ggatttttat      1860
     gacaatgaat ttttcgatcc taaactatat catgttttcc gcaaakatcg ggattctatw      1920
     aaaacgcaat gcgctagagg tggaggcstc ctagttgctg tgcggcgcaa cttgcggtgt      1980
     acatctttac ggctagcaaa tgaagattct cttctggatc aaatttgcgt atcgctctcg      2040
     ggacccttgg acacaatctt tttggtggta tcgtatatac cgccatgcag cagttttgag      2100
     ctawacaagg atttggaaga tcaccagttt atgtgcgttc tgggtgattt caatctgtca      2160
     tcgctggtgt gggtgcagga tgaagattct tcgastatga ttcccagtaa tgtgcatctg      2220
     cctcatgaaa ttctactaat tgatgatctt tttagtatgg gcttagttca gattaacagt      2280
     atattcaata agttaaatag gcttttagat ttaattttta ttagcccgga tttaggaaca      2340
     gatttaagtt gtagtaatat tcgactctca gagtgtgatg cccatcatca gcctttatta      2400
     ctattaataa catgtcatat ttactcagct aacaaatcac tcacaccttt aatgtatwta      2460
     agtgctaata gtttaaattc tattcgacat gatatttcta atattaattg ggtcgatagc      2520
     ctttcgcatg ctaatgttga ggctagctat gatcatttta tttctgtgct ttctcttatc      2580
     attagtaggt atgctaaaaa aagagttcaa agttcttata aactaccctg gtatacgcgg      2640
     ggactcaaaa aatacaaaaa tctccgtaat aagttttaca agcgttacct tgagagcggt      2700
     gaccctgccg atcttgaaag atacaagctg cacaagcgtg aattcgaatt cttaaacaaa      2760
     tttctttata gccaatatat gtcagatgtt gaaagtaaat tacgtatgaa tcccaaatcc      2820
     ttctggcact ttgtaaactc caaaagaaga acatcgaaca ttccttccca catgtctctt      2880
     aatagtgaaa tggcttcctc ggacttggag gttgctaact tgtttgctaa atttttttca      2940
     tccaatttcg agccaacttc gtcttggaat gatgatgaaa cccttctttc catcgactct      3000
     ctattaaata taggaaatct aaatgtgtcc gactttgact gccatattgc tgctgcgagc      3060
     ttaaatgact cagaacgtat ggattgcgat ggcctttctc cctttattct aaaaaattgt      3120
     attgatgttc tatgtgaccc cctcaaaata atttttaata agtccctctc cagtggtatg      3180
     ttcattcata gatggaagtt agctacagtg accccaattc tcaaatcagg tgtaaaaagt      3240
     tccatatcta attacagacc aattgccaag ctgagtaaca tttcaaaaat gtttgagcgc      3300
     attgtggcta ggcagctaaa ctttcttgtg ggccgctcta ttacccctaa ccagcatggt      3360
     tttatgccag gacgatcgac taccactaat ttagcaacct tcaatcactt ctgcataaat      3420
     tcttttgtga atcatcacca agtagatgta gtctataccg actttgccaa agcctttgat      3480
     aaagtctgtc atactgcttt attagctaag cttcaaaaaa tgggattcca ctctctaatc      3540
     ttagattgga ttaggtccta cctaaccaat agagaataca aagtggaaaa taatggggtt      3600
     ttttcgaacc cgtatgtggc aacgtctggc ctccctcaag gaagtgcttt agggcccttt      3660
     ctattcattt tatttataaa tgatataagt aattccatac atgattctga gtttctatta      3720
     tttgcagatg acctcaaatt attcaagtcc gttaattcaa cttcagactg tttactcctc      3780
     cagaatgact taaatagatt aggtaattgg tgctcccgaa atatgcttcc tttaaatttt      3840
     tcaaaatgct ttttagtaag atacagcaag cgtataaata atgttatctg ctcgtattca      3900
     attaattccc atctccttgc cacaaaaaac gagtgcctgg atttaggaat tgtttttgat      3960
     tcgaaatttc tcttcgttga acatataaac tacatcatac ctaaagcata tgccatgtac      4020
     ggattcatca agcgcaacac aactcacttc tctgacccat acactaagct tactctattc      4080
     ttctcattcg ttcgttctaa attagaatac gcggcatttg tctggaaccc gactggactt      4140
     gtgtacattc gtcgggtaga gcgagtgcaa aagcttttcc tccgtttcgc ccttcaaagc      4200
     ctccgattcc gtgatcccac tccttcctat gctgctaggt gtcgccttgt acagcttgca      4260
     acattacaag atcgtaggag tgtaattgcg ctgcttttta tattagacct actttccgga      4320
     aaattgattg ccctattttg cttaatatta ttagcctatc cgtgcctagt agggctctaa      4380
     gaaccactga accttttttt atccctacac acagaacaaa ttacgctcta aatgagccta      4440
     tgtacagagc tttacatctc ttcaacagtc tgccacttag catgcgattg gacccaagtt      4500
     cgtccaggga tagcaacaag aaagccctgt tattatattt ctctagaatt agtaattagt      4560
     taagagttag ttaagtagcc agtaaaggac atgaagtctg ttggcgaaat aaataaataa      4620
     a                                                                      4621
//
ID   CR1-19_CQ   repbase;    DNA;    INV; 4411 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-19_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4411
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 23-23 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..4366
FT                 /product="CR1-19_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="IXRTQRRXFLGXFKCCREHSGKSATPPVPTLNDADDA
FT                 EFAARVCTAIDSKDTGACFGVDWRSGRFTHGSSDRITCGTIVPTIPASFRS
FT                 SSQHLPVRVLQSSPGRAVESLMRAPRLPDATTSSPRQRLRTPASRSHQSRP
FT                 GAGVGVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPP
FT                 SFRAIQFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVG
FT                 VGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAI
FT                 QFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGV
FT                 SQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPG
FT                 RAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAP
FT                 FGKYPPRSQHFLPDVRPTSSSCAGPSATQIANASTLSATVPSQLANDVQPQ
FT                 RPGSVDRRDSSLLTIYYQNVRGLRTKTNQLHLSLSSCDYDVIAFSETWLNA
FT                 KIVDSELSSDYTFYRADRSRETSVLERGGGVLIGVKKRFHPEPIHLRGGEK
FT                 LEQIAVRIPLPGKTLFVCCVYIPPNSDATIYTQHSSCVQQLCDLAQGPDEV
FT                 IVVGDYNVPNLTWHFDEDINGYLPSGQSTEQEVALIEDVLGTGLQQMFDLP
FT                 NANGRLLDLALVSDSSRFQLIEPPRAILKVDAHHRPFILVLETQSTGTAAE
FT                 QSGTYYDFANCDTMALNNSIASLDWANLLLVGSVDDIVERFYDKLNEIIRE
FT                 VVPLKHRRPHPNSHQPWWNRETRNLRNRLRKARKRFLKHPTEMLGRELADR
FT                 ELHYEMSLEAAFRGYISGIESNLKREPKSFWAFVKKRKQDKGIPQDMVYRD
FT                 SSASTPDDSVQLFADFFKTVYSANQPTTSNESLDKILPHELHMPLVCLTEE
FT                 DVRKVLASTDASKGPGPDCIPPSIVKQCAATLANPLAIIFNRSLESGVFPA
FT                 KWKVASITPIHKSGNVHNVENYRSISILSCLPKVFEKIVHEFLSRAVQPII
FT                 SACQHGFMAKRSTTTNLMTFVTDVLRSMESRCQVDAVYVDFAKAFDRVPHQ
FT                 LAVEKLRRLGLPEWITTWLHSYLTSRSAYVKLGGSKSGLFMIPSGVPQGSH
FT                 LGPLIFLLFIDDLCHWIKNDKVLYADDLKFYRTITSPLDCLALQSDIDSLM
FT                 RWCDQNGMEANAKKCQVITFDRKLRPITHAYMMGISLLDRVCSVKDLGVTL
FT                 DRKMTFNEHITSVTAKAFATIGFIRRNTTAFKDIHALKALYSALVRSQLEY
FT                 AAQVWAPYHNVHIARLERVQRAFVRLALRTLPWRNPPEQTSIEDRRRLLGL
FT                 DTLLKRRQRMQQLFIFDLLTKRLDCQKLSQLLIVYVPPRNLRRNPSMFRLS
FT                 VHHTVYGHNQPFDVCCRLFNVVSDRFVLNMTKDSFKKLISC"
XX
SQ   Sequence 4411 BP; 1023 A; 1265 C; 1077 G; 1043 T; 3 other;
     aatcwgaaga acgcaacgca gaawtttttt gggagmcttc aagtgctgtc gtgaacactc        60
     aggaaaatcc gccactcccc ccgtcccaac ccttaacgac gccgacgacg ccgagtttgc       120
     cgccagagtc tgcaccgcaa tcgactccaa agataccgga gcatgttttg gagttgactg       180
     gaggtctggg cggttcaccc atggatcatc agacagaata acgtgcggca caatcgtgcc       240
     aacaatccca gcatcttttc gctcttcatc ccagcatcta ccagtacgag tcctccagtc       300
     ttcgccagga cgcgccgtag aaagccttat gagagcccct cgcctgcccg acgccaccac       360
     gtcttcgcca cgccaacgct tgagaacccc tgcaagtcgc agccatcaga gccgtcctgg       420
     tgctggtgtc ggtgtcgggg gaggggtctc tcaaccggcg cccttcggca agtacccttc       480
     tcgatcgcaa catttcctgc ctgatgtccg tccaacttct agctcgtgcg ccagtacgtc       540
     ggcgactcaa actgcaatcg tctcaccgcc gtcatttcga gccatccagt tttcgccagg       600
     acgcgccgta gaaagcccta tgggagcccc tcgcctgccc gacgccacca cgtcttcacc       660
     acgccaacgc ttgagaaccc ctgcaagtcg cagccatcag agccgtcctg gtgctggtgt       720
     cggtgtcggg ggaggggtct ctcaaccggc gcccttcggc aagtaccctt ctcgatcgca       780
     acatttcctg cctgatgtcc gtccaacttc tagctcgtgc gccagtacgt cggcgactca       840
     aactgcaatc gtctcaccgc cgtcatttcg agccatccag ttttcgccag gacgcgccgt       900
     agaaagccct atgggagccc ctcgcctgcc cgacgccacc acgtcttcac cacgccaacg       960
     cttgagaacc cctgcaagtc gcagccatca gagccgtcct ggtgctggtg tcggtgtcgg      1020
     gggaggggtc tctcaaccgg cgcccttcgg caagtaccct tctcgatcgc aacatttcct      1080
     gcctgatgtc cgtccaactt ctagctcgtg cgccagtacg tcggcgactc aaactgcaat      1140
     cgtctcaccg ccgtcatttc gagccatcca gttttcgcca ggacgcgccg tagaaagccc      1200
     tatgggagcc cctcgcctgc ccgacgccac cacgtcttcg ccacgccaac gcttgagaac      1260
     ccctgcaagt cgcagccatc agagccgtcc tggtgctggt gtcggtgtcg ggggaggggt      1320
     ctctcaaccg gcgcccttcg gcaagtaccc tcctcgatcg caacatttcc tgcctgatgt      1380
     ccgtccaact tctagctcgt gtgccggtcc gtcggcgact caaatcgcaa acgcctcgac      1440
     gctgtcagcc accgtcccta gtcaactcgc taatgatgtt caaccccaac gccccggctc      1500
     cgtggaccgt cgtgactcct cactgctaac catctactac cagaacgtta gaggactaag      1560
     aacgaaaacc aatcaactgc acctgtcgct gagctcgtgt gattacgacg tgatcgcatt      1620
     ttctgaaacg tggctcaatg cgaagattgt ggactcagag ctttcttcgg attatacctt      1680
     ttatcgtgcc gatcgtagtc gtgaaacaag cgtcttggag agaggtggcg gcgtcttgat      1740
     cggtgtcaaa aaacgttttc acccggaacc cattcatttg cggggcggtg agaagcttga      1800
     gcagatcgca gtgcgtatcc ccttgcctgg aaagacgtta ttcgtctgct gtgtttacat      1860
     tcctcccaac tcagatgcaa ctatctacac tcagcactca tcgtgtgttc aacaactgtg      1920
     cgatctggcg caaggtcctg atgaagtcat cgtcgttggc gactacaacg ttccgaatct      1980
     cacttggcat ttcgacgaag acatcaacgg gtacctgccc agcggccaat ctactgaaca      2040
     ggaagttgct ctgattgagg acgttcttgg tactggcctc cagcaaatgt ttgatcttcc      2100
     gaacgcaaat ggacgattac tcgatctggc cctcgtaagc gactcgtctc gattccaact      2160
     cattgaacca cctcgggcca ttctcaaggt tgacgcacat cacaggccgt ttatcctagt      2220
     tctcgaaacg caatcaacgg ggaccgctgc cgaacaatcc ggaacgtact acgactttgc      2280
     taactgcgac accatggcgt taaacaactc tattgcaagc ttggactggg ctaatctgct      2340
     actcgttgga tctgttgatg acatcgttga gcgattctac gacaagctaa atgaaattat      2400
     ccgggaggtt gtacctctaa agcatcgacg tccgcaccca aacagccacc agccttggtg      2460
     gaatcgagag acccgtaatc ttcgcaacag gctgcgaaaa gcaaggaaac gtttccttaa      2520
     acatccgacg gaaatgctgg gcagggagtt ggcggatcga gagttgcact acgagatgag      2580
     cttagaagct gccttccgag gatacatcag tggcatcgaa tcgaacctga agcgtgagcc      2640
     gaaatccttc tgggcattcg tgaagaagcg gaagcaagac aaagggattc cgcaggacat      2700
     ggtgtatcgt gactcaagcg cctcaacgcc agacgattct gtacaactgt ttgcagattt      2760
     tttcaaaacc gtttacagcg ccaatcaacc tacaaccagc aacgagtccc tggacaagat      2820
     cctgccgcac gagttacaca tgcccttggt gtgtctcacg gaggaagacg tgcgcaaggt      2880
     cttggcctct accgacgcct ccaaaggacc tggcccggac tgtatccctc cgtccattgt      2940
     aaagcagtgc gcagctacac tagcaaaccc gctcgccatt atcttcaacc gctccctcga      3000
     atcgggtgtg ttccctgcta aatggaaggt agcttcgatc acgccaattc acaagtccgg      3060
     gaacgtgcac aacgtggaaa attatcgttc gatctccatt ttgagctgcc tacccaaagt      3120
     gttcgagaaa attgtgcatg agtttttatc ccgtgccgtg caaccaataa tatctgcctg      3180
     tcagcatggt ttcatggcca agagatctac gacaacgaac ctgatgacct ttgtcaccga      3240
     cgtcttaagg agtatggaga gtcgctgcca ggtggatgct gtctatgtgg attttgcgaa      3300
     ggcgttcgat agagtgccgc accagcttgc cgttgaaaaa ctgcgaaggc ttggactccc      3360
     tgaatggatc acgacttggc tgcactcgta cctaacttct cgttcagcct acgttaaact      3420
     cggtggctcg aagtctgggt tgttcatgat cccgtctggt gtcccgcagg gtagtcatct      3480
     gggcccacta atttttcttc tgtttatcga cgatctctgc cactggatca agaacgacaa      3540
     ggtcttgtac gctgatgact tgaagttcta tcgcacaatt acttcaccgc tcgattgcct      3600
     ggctctccaa agtgacattg attcgctcat gaggtggtgc gatcaaaacg ggatggaggc      3660
     caacgcaaaa aagtgtcaag taattacatt cgaccgtaag ctgcgcccaa tcacgcacgc      3720
     atacatgatg ggaatatcct tgctagaccg ggtgtgttct gttaaggatc ttggcgttac      3780
     tcttgacaga aagatgactt tcaacgagca tatcacttcc gtcacggcta aggcgtttgc      3840
     tacaattggt ttcatccgaa gaaatacgac tgccttcaaa gacatccacg ctctaaaggc      3900
     tctgtacagt gccctagtca gaagccagtt ggagtatgct gcccaggtgt gggcaccata      3960
     tcacaatgtt cacatcgcca ggttggagag ggtgcaacgc gcgtttgtgc gactagcatt      4020
     acgcacgctg ccgtggagga atccgccgga gcagacatca atcgaggatc gccgtcgtct      4080
     gttggggctg gacacgctgt tgaagaggag acagaggatg cagcagctgt tcatcttcga      4140
     tcttttgacg aaaaggctgg actgtcaaaa attgtctcaa cttctgatcg tttatgttcc      4200
     accacgtaat cttcgtcgaa atccgtctat gtttcgtcta tctgtgcacc atactgtgta      4260
     tggacacaac caaccatttg atgtatgctg tcgtttgttt aatgtagttt ctgaccgttt      4320
     tgttttaaat atgacgaaag atagttttaa gaaattaatt agctgttagg aaacagtctg      4380
     ttcaagacga agataaataa ataaataaat a                                     4411
//
ID   CR1-1a_AG   repbase;    DNA;    INV; 5247 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 3)
XX
DE   CR1-1a_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; endonuclease; CR1 clade; DNA/RNA-binding;
KW   CR1-1_AG; CR1-1a_AG.
XX
NM   CR1-1a_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5247
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-1a_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 13-13 (2003).
XX
DR   [1] (Consensus)
XX
CC   CR1-1a_AG is a subfamily of CR1-1_AG non-LTR retrotransposons.
CC   The CR1-1a_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-1a_AG occurred less than 1 million years ago.
CC   The CR1-1a_AG and CR1-1_AG consensus sequences are 79% identical
CC   to each other. The 3' terminus of CR1-1a_AG is composed of the
CC   CAT
CC   microsatellite.
CC   CR1-1a_AG encodes two proteins: a 444-aa CR1-1a_AG-ORF1p
CC   (positions 441-1772) and 932-aa CR1-1a_AG-ORF2p (positions
CC   1776-4571). CR1-1a_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-38) and gag-like zinc knuckle
CC   regions (aa positions 340-444). CR1-1a_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           441..1772
FT                 /product="CR1-1a_AG-ORF1p"
FT                 /translation="MECLACSAVVLINDDPILCAGKCGGNFHRRCVTPSLS
FT                 KTAAKIINENKNVLYMCDRCLEHKSGLAGMDVDVSGSYDLLTQSIKNLESN
FT                 VSVWISSALEKGIETLKTELCAQVERKLEQTLRESLSAVECSNKAKEALRA
FT                 TFDDTKARETVEDESWATVTKKRKRTNSGNSNVQTIINRFDTGNVNSTPKI
FT                 SDKVTGPILANKNKNSKTLVIVPKVGQSCDKTRADLRAKLDPRKQQVSEFR
FT                 NGKDGQVFVQCSAQVKLDELRKEVENILGDEYATDLPLSRVKIIGMSEKYT
FT                 DSHLVDLLKSQNEGIPWKQVKVIGMFENKIYKYQKYNAVLEIDYESDLCLA
FT                 KLGKINVGFDRCKISKSVHVMRCYGCGQFNHKSTECKNKQACSKCGDEHKT
FT                 SECTSSSLKCVNCVLANSVRNLKLDVRHAANDYNCPMFKKQIERRMQLSQ"
FT   CDS           1776..4571
FT                 /product="CR1-1a_AG-ORF2p"
FT                 /translation="QVGEELGRFREILYFNVAGLSSNYAMFRETVEKVQPL
FT                 LVLISETHVIEEEAFQQFHINGYRVVSCLSHSRHTGGVAVYARSEIVLKVI
FT                 FNESLEGNWFLGVAVSKGMTAGNYGILYHSPSASDSRFVDILEEWLDRFLN
FT                 FSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMKQKVNEFTRIARQSRTLI
FT                 DQVYSSTDSIKVTTDPLLKISDHETLVLNINVKRCETIQRKFKCWNRYSKF
FT                 ALCNHVSQGLRQEAPSFNEAADLLWNTLKKAMGTLVEEKTILSRETSRWYT
FT                 LELSRAKRKRDEAYQHFIRSNSGYDWTEYTRLRNTYSRNLKTTRRNYFSGE
FT                 ISKHKGNSKELWKVLKSLLRPEESRVSVVKFDGLVESEDSIICQKFNLFFV
FT                 NSVLDINQNIADARAPDSLFCNDAPGNQFKFQKITKEKLKTICFSLSKTAG
FT                 IGNVNCNTIQDCFHVVGESLLIVINQSLEEGIFPETWKESLVIPIPKVSGA
FT                 ASAEEFRPINMLHVLEKVLELVVKEQLVQFLTRNDLLISEQSGYRQGHSCE
FT                 TALNLVLARWKVLMDRKESIVAVFLDLKRAFETISRPLLLQTLRRFGIVGK
FT                 ELNWFENYLKDRTQRTVFGNSISEPIENTLGVPQGSVLGPILFIMYINDMK
FT                 QVLKSCEINLFADDTVLFISHKDIKQAESLINFDLNALDGWLRYKKLALNV
FT                 KKTSYMVMTAGVLDSPPSIVINKEPIERVRQVKYLGVILDDRLKFNTHIDW
FT                 VIAKVASKCGVISRLAKDLDFFGIVNLYKSLISPHFDFCSSILFLGNKGQI
FT                 KRLQRLQNRIMRLALGCGRRTSSFVMLDILQWMSVEQRIVYQTMTFIFKLL
FT                 GGLLPGYLGERIVRGSDVHRHCTRRANEPRVPNLISHGARNSLFFKGIQLY
FT                 NRLPGEIKNASNLPDFKRRCAAYVKQTV"
XX
SQ   Sequence 5247 BP; 1575 A; 847 C; 1255 G; 1570 T; 0 other;
     tcaacccttg aggtgaatgg tgacaagtgc agtcctgtga atgtgtagct cccgtttgtg        60
     aactgtgaaa acttgtgaaa tagagagcta agtgttattt tgttttgttc tacttgttac       120
     ttaatgttag tgctacctgc ggtatcattg tttagtattt gtattattgt tttgtgaatg       180
     taaaacacgg gtgaagtatc tcggtcgaca gcgtcactgc gttgtcgaaa gtgattaatc       240
     tttgctcggt atgtgtttgt gttcgtgcta gacatacgta tcgttgtccg tttgtcaaga       300
     cgtgtacacg agtgtaagcg tttgatatcg caggctgtag tagagtagtg tttgtgtgca       360
     tttgctgtta cctttttttc atgtctgtgt gataattttt ttaattctaa aacagctcgc       420
     ccgaattttg tttttacggc atggagtgtt tagcatgctc cgccgtagtt ttaataaacg       480
     atgacccaat tttgtgtgcg gggaaatgtg gtggcaactt tcatcgtcgc tgtgttaccc       540
     cctcgctctc gaaaacagcg gccaaaataa ttaatgagaa taagaatgtg ctgtatatgt       600
     gtgatagatg tttagaacac aaatcgggct tggcgggtat ggatgtagat gtgagtggat       660
     cgtacgattt actcacacaa tccataaaaa atttggagtc gaatgtgagt gtatggatat       720
     cgagtgcctt ggaaaaggga atcgagactc taaaaactga gctctgcgca caagtggaac       780
     gcaaattgga gcaaacattg cgtgaaagct tgagtgcggt agaatgctca aataaggcaa       840
     aggaagcctt gcgtgcaacc tttgacgata ctaaggccag agaaacagta gaggatgaaa       900
     gttgggctac agtgactaag aaaagaaaaa ggacgaatag tgggaacagt aatgttcaaa       960
     ccattattaa tcgttttgac acggggaatg ttaattcgac gcccaagatt tctgacaagg      1020
     ttactggacc cattttagca aacaaaaata agaatagtaa gactctggtt attgtaccaa      1080
     aggtgggtca atcttgtgat aagacaagag ctgaccttcg cgctaagctg gatccaagga      1140
     agcagcaggt gtcggaattc cgtaacggca aggacggtca ggtgtttgtt caatgttctg      1200
     ctcaggttaa attagatgaa ctcaggaaag aagtagaaaa cattttggga gatgagtatg      1260
     caacggattt accattgtca cgtgtaaaga taattgggat gagcgaaaaa tacactgact      1320
     cacatttagt agatctttta aaatctcaaa atgagggaat accctggaaa caggtcaagg      1380
     tcataggaat gtttgaaaat aaaatttaca agtaccaaaa atataatgcg gtcttggaaa      1440
     ttgattatga gtctgaccta tgtctggcaa aattaggaaa aataaatgtg ggatttgata      1500
     ggtgtaaaat ttcgaagtcc gtgcatgtta tgaggtgtta tggttgtggt caatttaatc      1560
     acaagagcac cgagtgcaag aataagcaag cttgttcaaa atgtggtgat gaacacaaaa      1620
     cgtccgaatg tacttcatct tctttgaaat gtgtgaattg cgtgttagca aactctgtta      1680
     gaaaccttaa actagatgta agacatgcgg ccaatgatta taattgtccg atgtttaaaa      1740
     aacagataga aaggcgtatg caactttctc aatagcaggt aggggaggag ttaggacggt      1800
     tcagagagat tttatatttc aatgtagccg gtctttcgtc caactacgcc atgtttcgtg      1860
     agacagtaga gaaagttcaa ccgttgctgg tcttaatctc tgaaactcat gtgattgagg      1920
     aagaagcatt tcagcagttt catattaatg gttatagggt tgtgtcgtgt ttgtcccact      1980
     cacgtcatac aggaggtgta gctgtttatg ccaggagcga aattgtccta aaggtgattt      2040
     ttaatgaatc attggagggt aattggtttc ttggtgttgc agtttctaag ggaatgacag      2100
     caggcaatta cgggatattg tatcattcgc caagtgcaag tgactcaagg tttgttgaca      2160
     ttttggaaga atggttagat aggttcttga attttagcaa acttaacatt atcgtcggtg      2220
     atttcaatat tgactggtta aatgttgaaa aatctgcgaa gttgaaaagc ttaatggatt      2280
     cagtaaacat gaaacaaaaa gttaacgaat tcacacgaat tgctaggcag agcagaacat      2340
     tgatcgatca ggtttacagt agcacagact caatcaaggt cactactgat ccgttattaa      2400
     aaatatcgga tcatgaaaca cttgttttga atataaacgt gaaacgttgt gaaacgattc      2460
     aacgaaaatt taaatgctgg aataggtact cgaaatttgc tctttgcaat catgtgtcac      2520
     aaggtttaag gcaagaagca ccgagcttca acgaagctgc agacttgtta tggaacacat      2580
     tgaaaaaagc tatgggcacc ttggttgaag agaagacaat cttgtcaaga gagactagta      2640
     ggtggtatac tttggaactt agccgtgcga aacggaaaag agacgaagca taccaacatt      2700
     ttattagatc aaactcaggc tacgattgga ctgaatacac tagactaagg aatacataca      2760
     gcaggaatct caaaactact cgtagaaatt actttagtgg tgagatatct aagcataaag      2820
     gaaatagcaa ggagttgtgg aaagtgctta aaagtttact aaggccagag gaatcacgcg      2880
     tttctgttgt aaaatttgat gggttggtag aatcggaaga ttcaataata tgccagaaat      2940
     tcaatttgtt ttttgtaaac agtgttttag atataaatca aaacattgct gatgccagag      3000
     cgcctgattc tttgttttgt aatgatgctc caggaaacca attcaaattt cagaaaatta      3060
     caaaagagaa attaaaaact atttgtttca gcctgtccaa aacagcgggc atagggaatg      3120
     ttaactgtaa tactattcag gattgcttcc atgtggtagg agagtctctt cttatagtga      3180
     tcaatcagtc gctggaggag ggtatttttc cggagacttg gaaggaatca ttggtaatac      3240
     ctattcctaa agtgagcgga gctgccagtg cggaagagtt tcgtcccatc aatatgttgc      3300
     atgtactcga aaaggtgctg gaattggtgg ttaaggagca attggtccag tttctaactc      3360
     gaaatgacct gttgattagt gaacaatcag gatatcgaca gggacactct tgtgaaactg      3420
     ctttaaatct tgtactggcg aggtggaagg tgttgatgga tcgaaaggaa tcgatagttg      3480
     ccgttttctt ggatctaaaa cgagcatttg agactatatc aagaccgtta ttgctgcaga      3540
     ccttaaggcg ttttggtatt gtggggaaag agctcaattg gttcgaaaat tatttaaaag      3600
     acagaactca gagaacagtt tttggaaact ctatatcaga gcctatagaa aatacccttg      3660
     gagttccgca aggaagtgtt cttggaccaa ttttgtttat aatgtatatc aatgacatga      3720
     aacaggtttt gaagtcttgt gagatcaatc tttttgccga tgatactgtt ttgtttatct      3780
     cgcacaaaga catcaagcaa gcagagtctc tgattaattt cgatttaaac gctctggatg      3840
     gttggcttag gtacaaaaag ctagcattaa acgttaagaa gactagttac atggtaatga      3900
     ctgctggtgt attagacagt cccccatcca tcgtgataaa taaggaacca atcgaaagag      3960
     tccgtcaggt taaatatctg ggggttattt tagacgacag attgaagttc aacactcaca      4020
     tagactgggt catcgctaaa gtggcatcaa agtgtggggt tattagtagg ctggcaaaag      4080
     atctcgattt ttttgggata gttaacctct ataagtcact gatttcacca cattttgatt      4140
     tttgctcgtc gattctgttt cttggcaata agggacaaat taaaaggctt cagagattgc      4200
     aaaatcgtat tatgcggtta gctttagggt gtggccgacg tacgtcgtct tttgttatgc      4260
     tagatattct tcagtggatg tctgtagagc agaggattgt gtatcaaacc atgaccttta      4320
     tatttaaact tttggggggc cttttgccag ggtatttagg ggaacgcatt gttcgaggat      4380
     ctgatgttca tcggcactgt acacgcagag caaatgagcc gagggttccc aacttaattt      4440
     cacatggtgc cagaaactct ttgtttttca aggggattca attatacaac agattacccg      4500
     gagaaatcaa gaatgcgagt aacttgccag acttcaaacg taggtgtgcg gcatatgtta      4560
     aacaaactgt gtaatgtcat atttgtgtag aagtcctatg tcactatgtt atgtacaact      4620
     gcacttgtca tcatgagctt gatgatgatg ataagatttt tcttgatata tgaaaacaaa      4680
     ttagaaaaaa tatataagaa agagacaaca taagtttgag acacgcgcgc gtacaagtgg      4740
     acaatcggat ttagtttggg agagcttgct gtctgcatgt ctgggaggtc acagcgagat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttctcc tgcatcggaa      4860
     ggtagtgccc tggtgccatc gttggtacca gcggaactgg ccatatgcat gttgcagtgt      4920
     gccctgataa tttccaatac attaggttct gctgcttcgg aaggtagtgc cctggagccg      4980
     gtgtggcacc agtggaactg gccatatgca tgtcgcagtt atgtcctgat gtgttcgatg      5040
     gagttgaccc gttttttctt gatgaaacta cgtcggtcgt cttgggtgtg tgtatgactt      5100
     ggtggattct tttgaatgac gtccgatgcc accacttgct cgtaaatttt tattttattc      5160
     aaaaactacc ttagagtaat attatcgtaa agatacttcc gtccttctca aacctgtgtt      5220
     ggggtaagag gtgggactta tcatcat                                          5247
//
ID   CR1-1B_DTa  repbase;    DNA;    INV; 4608 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   05-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1B_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4608
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5909-5909 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4608 BP; 1213 A; 950 C; 825 G; 1617 T; 3 other;
     gcgtcgcttg tgaacggttg tgtttaccat tgtgctctga gtttttgttt tatattgtgt        60
     tatttccgca agtattttgt gtttatttac taacaaagtt tagcctaaca atcgtgttag       120
     tgactttcat agatctccca gattacgggt acgtggttat agttatttta acatttccat       180
     ttgatttatt taatatcttg gctttgttag tgtaatttgc actctccaaa ttggctctta       240
     tattctctct cttactctta ctctctctct ctgccgctct attataactg taatttcact       300
     ctctctgaac ctgccgaatt tcttgtagac ctattctcat agtctctctc tctcttgctt       360
     gctttacatc taactgttcg tgcgttgagt tgttttggtg ccccacaagc cacgctcagt       420
     cgatagaaga cttttctctc gcgctctctt tcgatttaat tcgcgatctc gcgctcttat       480
     actttttgtg tttttgtgat tttgtggttt tggaatttga tcccagtgcc aaatttactt       540
     gaggtatttt tttatacttt tatatacttt ttattttatt ctctttattc tctaacgtat       600
     ttttcttata atgactctta tctgtactaa gaaaaattgt aggactgcat ctaatgaccc       660
     ttttgtttac tgttggctct gcgaagcaat gatgcattct aaatgtgcag gatttactgg       720
     cagagttaaa gactttattg aaatgcggat tggtctcatg tgggtatgtg agcmctgcag       780
     ggatttggca gttgagatga gcagctttat gaggcagact cgagacggcc tatgtaatct       840
     ttcacgagtt tttaaacagc tcaatgawgg atttaattcc gtatgtgaac aatttaataa       900
     taaaaaatta ttaaccgagt cgcccaaacg caaaaaagct agctcaacga cagtaaaggc       960
     gagtgttgaa tcctctttaa atccaaactt ggtagctgct gcagtttctg gtgacacagg      1020
     ggtaagtgaa ccacctgtgc caatggatac tgctagttca ggtgtagtcc ctgtccctgt      1080
     agcccctgta tctgaatgtc aggctccaga tccggcggta tcaaccaatc cggagccgac      1140
     catacccata ggtacagtgg gcgccgtttc tgtcgctcag ccgaatgagg ttcaggctgc      1200
     tgctgggggg cgtaaaaatc tctcagttgt acccagacgt acagtaggtg ccgcttctgg      1260
     cgctcagctg agtgaggttc agactgctgc tggggggcgt aagaaactct cagttgttcc      1320
     acataggaag caactatttg tttcaagatt tacgcctgat accacatctg aggatgtttt      1380
     ggaattcatt cgtgaaaaat tcccatccga ggatattgcg gttgaacaat ttmgattttc      1440
     atacgcccgt aggatatcgt ctttcaaaat ttttgctccg cctgatgtgt ttaaagaact      1500
     gctttctgaa agcttctggc ttaatgatga tctggttata aaagaatttg ttcctaataa      1560
     accgagaaca aataataggc cttccacggt gccaaaaaac tgaaaagttt attattggct      1620
     taccaaaatg ttagaggact taacatgaag ctaccaaagc tttatgctga ctcctcggca      1680
     tttacggacg atatcttagc ttttactgaa acttggctga aaccagagat aacagactct      1740
     gaagttctgt ctaccaattt taatacctac agaaccgatc gcctttcccg tagggggggc      1800
     ggcgttttaa ttgccgtcac ctccaccata agttctgaga gaattcactc ttatgcctct      1860
     aatgacattg aatttgtttg tgtgaaagtt tccctgcaaa ccttgtctat ttttattaca      1920
     tgttcgtata ttccgcctgg ctctgaccta ataatttatg agcaacatct atctgctatt      1980
     aaatcaattt tacccttttt ttccaataga gaccttttca ttgttttggg tgactttaat      2040
     ctccctgata tatcttggtc ccccccttct gactcacttg tcgctttacc tttatccacc      2100
     catgattttg tggatggcct tttagaatta tcgttacagc aggttagctt tatacgaaat      2160
     tcattaaata gacaattaga tcttgtgttt gtttcagagc cgtctgaagt cacagtatct      2220
     agaattgacg ctcttgtggt accagaagac cgataccatc caactatgga attgacaatt      2280
     tgcctcccct accttgatac cctctctcct ttagtttctc caactaaaat gagatgtttt      2340
     cggaaatgtg actataataa acttaattta atgatttcgc aatacgattg gacagatctt      2400
     tataactgtg tggacatcga aagtgcaacg gaacttttct atagcgttct aaacactttt      2460
     tttaatgaat gcgttcctga taggcttcct cccaagccga acaggccccc ctggtttaca      2520
     aatgcgcttc aaagactaaa aaatcttaaa acaaacactt ataaaaagta taaaaaatcg      2580
     ggtaagccat ctgatttttc gaaatatgtg gtggctcgat ctgattttaa tgttcttaac      2640
     agtcattgct attccatgta tttaaatcgt tgtaaatttg aatttacaaa tgatccgaag      2700
     caattttata actttgtcaa cgcaaagcgt aagtcatcag ctttgccttc atcggttcga      2760
     tttaactcaa tggaggcatc gactgactct gaaattgctg atttattctc tgactttttc      2820
     caaactactt atagctcttc ttcatggtca gaatcaaatt accgtaatcc cttaaatagg      2880
     gcaaattgta ttttttcccc tataattacc gaaagttctc tcttaagaga tttaacatca      2940
     acaacgccaa cttattctcc cggtcctgat ggacttcctg ggtgtgtgct taagttttgt      3000
     gcatcaacca tctgcaaacc tattcttaaa ctttttcaat tgtctatttc atcatcagtt      3060
     tttccaacta tctggaagga ttcttttatt attccacttc acaaaaaggg tgcgaaggcg      3120
     gatgcccaga attatagagg tatttctaaa ttgtcggcta ttccaaaagc ctttgaacgt      3180
     attatcactt ctcatttgca acatttatgt tcctcgctaa tatcaccgtg tcagcacggt      3240
     tttgttaagc gaagatcgac taccaccaac ctacttgaat tgtcatcaat tgtaataaat      3300
     ggatttaaca ataaaatgca gactgacgtt gtatatacag atttcagtaa agcctttgac      3360
     tctgttaacc actctcttct tttattcaaa ttagatttgc ttgggtttcc atgtaatcta      3420
     ttaacttgga tttcaagcta tttgaatggg aggactcaga gggttatatt taagaacgct      3480
     gtttcaaaaa cgatccatgt gacatctgga gtacctcagg gtagtcattt gggccctttg      3540
     ctgtttactt tgtttattaa cgatcttccc tctattgtaa cacattctcg tgtactaatg      3600
     tatgcggatg atgttaagct ttgtttgaca tataataata tagagtctgg ttttggctta      3660
     caatcagaca ttgatcaatt tcaagtatgg tgtgagtata acctcttaaa tttgaactgc      3720
     ctaaaatgca acgtaatgac cttttatagg gtcaccccta cctttataag ttattcgctt      3780
     cagaatttgc cacttgaccg tatatattca gtaaatgatt taggcgttct tctggacccg      3840
     aagcttaaat ttgactgcca cataatgtcg acagtcaata aagctatgag tgttcttggg      3900
     tttataaagc gttggtcaaa agaatttgat gacccttata taaccaaatt attatttacc      3960
     tcccttgtcc gtcctatatt ggaatattgt tcttcggttt ggagcccaca ataccaagtc      4020
     cacattgacc gtatagagtc ggtacaaaaa aaatttctcc tttttgccct tcgtagtttg      4080
     aactgggatc aaaacgtaag gctaccttcc taccagagta gattattatt gcttaattta      4140
     ccgacacttg caaatcgtag aaaaatgctt ggtaccattt ttatgcataa tcttataaga      4200
     ggtgatattg attctgtaga gcttgttagc cgcctaactt ttaatgttcc cgttagacta      4260
     acacgtaatt atcatcctct taatttacct cgatgtacat caaattttgg tctgcacgag      4320
     ccctttcgcg ttctatgtaa taactataat gttctttatc atttaatttg cacatcaact      4380
     tcaatcccgg tattaaaaac taacatttta actcatttgc ttcactccta actgcatgtt      4440
     ttttttttca ttattggtcc cgtctttatg ggttttatgt attcttcctc gcgaactcgc      4500
     atttttgccc aaatttacaa aagggccccg cgcgtaacaa gcacgtgctt ggtgtcgttg      4560
     ggccacttgt ttgtacttct cgtagtgcat caacgtccat catatata                   4608
//
ID   CR1-1C_DTa  repbase;    DNA;    INV; 4530 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.10, Created)
DT   17-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1C_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4530
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5910-5910 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4530 BP; 1192 A; 928 C; 822 G; 1587 T; 1 other;
     cgatttagcg tcgcttgtga acggttgtgt ttacctgtgc tctgagtttt tgatttattt        60
     ttgtgatttt ttacgcaagt gttttgtgtt tagcatacta acaaagtttg cctaacaatc       120
     gcgttagtgt tttaaataga tctccctgtt taacgggtat gtggttttag ttattttaac       180
     aatttccatt agatttgttt aatatcttgg ctttgttggt gttattttgc gctctctaaa       240
     tttgctcttg tattctctct ctttttctct ctctctattc cgctctattt taactgtaat       300
     ttcgctctct cggaacctgc caaatttctt gtagactctt gggtgctttt ctcatagtct       360
     ctctctctcg ctttacattg taactgttcg ttcgttttgt tgttggtgcc gcacaagcca       420
     cgctcagtcg attgaacact ttttctctcg cgctctcttg ctctcgactt aattcgcgat       480
     ctcgcgctct tatacttttg tgttttgtgt tttttgcggt tttggaattt gatcccagtg       540
     ccaaatttac tcgaggtata ttttccacat tttattttct atttctttga ataatctttt       600
     tttcctataa aatggccctt atctgtatga agaaaagttg tgctcttccg atgtcaacca       660
     aagattcttt tattatctgc tggctctgcg attcggtcat gcacgtcaaa tgtgcaggat       720
     ttactggcag agttaaagac ttcattgaaa tgcgtaccgg tctcatgtgg gcatgtgagt       780
     cctgcaagga aatgacagtc gaaatgagca gctttatgag gcagactcga gacggactat       840
     taaacctttc acgagttttc acacagctca atgacgggtt caactcagtt tgcgaccaat       900
     ttaataataa gaaattatta ttaactgagt cgcctaaacg gaaaaaagcc agctcagggg       960
     cggttaataa gaccgtgaaa cataacaaaa cattgaactc ggtagctgca gcagttccgg      1020
     tcggcacagg ggtaagcgag ccacctgtgc ctatggtaac agccagttcc ggaggtgacc      1080
     ctgtttctgg atgccaacct gagctacaga agtcggtgct gaccgtaggt acagtaggaa      1140
     ccgcttctgg gtcccagccg agtgaggttc agactgctgc tggggggcgt aagaaacttt      1200
     cagttgttcc acataggaag caattgtttg tttctagatt taccccggat accaaatctg      1260
     aggatgttat ggaattcata cgtgaaaaat tcccatccga ggacattgaa gttgaacaat      1320
     ttcgattttc gtacgcccgt aggatatctt cttttaaaat atttgctccg cctgatgtgt      1380
     ttaatgtact actttctgaa agcttttggc ttaatgatga tttggtaata aaagaatttg      1440
     ttcccaataa accgagaaca aataacaggc ctcccactgt gcctaataat cggctttcca      1500
     ctgtgcctaa taataggcct tccactgtgc caaaaaacta acaggtttat ttttggctta      1560
     tcaaaatgtt agaggactaa atatgaagct accaaagctt tatgctgact cctctgcatt      1620
     tactgaagat attttggctt ttacggagac ttggctgaaa ccagagatat ctgactctga      1680
     agttttgtca atgaacttta acacctacag gaccgatcgc tccccgcgta gggggggtgg      1740
     tgttctgatt gccgttacct ctagtttaac atcggagagg cttaacattc atatccctaa      1800
     cgatattgaa tttgttagtg tcaaagtttc cattcaatcc ttatctattt ttgtaacctg      1860
     ctcttatatt cctcctggct ctgatttaat aatttatgag caccatctgt ctgctatwaa      1920
     atctgttcta tcctttcttt ccaacagaga ccttttgatt gttttgggtg actttaatct      1980
     cccaaatatc tcttggtctc ttcccactga ctcacttgtc gctactcctt tatccgccca      2040
     tgattttgtg gatggccttt tagaattatc gttacagcaa gtaagcttta tacgaaattc      2100
     attaaataga caattagatc tagtctttgt tttagatccg catgaagtca ctgtagctag      2160
     aattgacgca cttgttgtac ctgaagacca atatcatcca actttggaat tgacaattgg      2220
     cctcccctgt actgataccc tttctccttt agttcctcaa actaaaagga gatgctttcg      2280
     taaatgtgac tataataaac taaactacat gatttctcaa tataattgga ctgatttgta      2340
     caattgcatg gatattgaca gtgcaattga acttttctat agcgttttaa acactttctt      2400
     tgacgaatgc gtacctgaca gtcttcctcc gaagctaaac aggcctcctt ggtttaacaa      2460
     tgagcttcaa agacttaaaa atcttaaatc caacacttat aaaaagtata aaaaaacggg      2520
     aaagccatct gattttgcga aatatgttgt ggctcgttca gattttaatg ttctcaacag      2580
     tcattgctat tccatgtatt taaatcgatg taaattcgag ttttcaaatg atccgaagca      2640
     gttttataac ttcgttaatg ccaagcgtaa gtcttcggca ttgccttcat cggtacgttt      2700
     aaactcaaaa gaggcatcgt cggattctga aattgcggat ttatttgccg agtttttcca      2760
     aactacttat agttcggctg cttggtcaaa ccctacctac cctaaccact taaatagggc      2820
     taattgtatt tttacccctg taattaccga aagttctctt ttaaaggatt tagcaacaac      2880
     aacgccaacg tattctcccg gtcctgatgg actccctggg agtgtgctta agttttgtgc      2940
     ttcaaccatt tgtaaaccga ttcttaaact ttttcatttg tctatttcat catcagtttt      3000
     tccaactatc tggaaggact ctttcattat tccactccac aaaaagggtg cgaaggcgga      3060
     tgcccagaat tatagaggca tttctaaatt gtcggcaatt cctaaagcat ttgaatgtat      3120
     tattacttct catttgcagc atttatgttc ctcgctaata tcaccgtgtc agcatggttt      3180
     tgttaagcga agatcgacca ccaccaacct tcttgaacta tcatctattg taataaatgg      3240
     atataagaat aacatgcaga ctgacgttat atatacagat tttagtaagg cctttgactc      3300
     tgttaaccac tctctccttt tattcaaatt agatcagctt gggttcccat gtaatctatt      3360
     aacttggatt tcaagttact tgaatggtag gactcagagg gttatattta agagcgctgt      3420
     ttctaaaatg atcaacgtga catctggagt tcctcaaggt agtcatttag gccctttgct      3480
     gtttactttg tttattaacg atcttccctc tatcgtagct cattctcgtg tactaatgta      3540
     cgctgacgat gttaagcttt gtttatcata taaagatgta gggtccggtt tcaacttaca      3600
     gtcagatatt gattgttttc agggatggtg tgagtacaac cttttaaatc tgaactgcct      3660
     taaatgcaac gttatgactt tttacagggg cactcctacg tttgttagtt attctcttca      3720
     aaatacacca ctcgaccgta tatattcaat taacgattta ggtgttcttc tcgacccaaa      3780
     acttaaattt gattgccaca taatggccac tgtcaataaa gctatgagtg tttttgggtt      3840
     tataaagcgt tggtcaaagg aatttgatga cccttataca accagattat tatttacctc      3900
     ccttgtccgt cctattttgg aatattgttc ttcagtttgg agcccacaat atcaagtgca      3960
     catcgaccgt attgagtcgg tgcaaaaaaa atttcttctt tttgcccttc gtagtttgaa      4020
     ctgggatcaa aacgtaaggc taccttccta ccagagtaga ttactattgc ttaatttacc      4080
     tacacttgaa aaccgtagaa taatgcttgg tactattttt atgcaaaatc ttataagagg      4140
     tgatattgat tccgtagaac tggtaaaccg tttaactttt aatgttcccg ttagactaac      4200
     acgaaattat taccctctta atttgcctcg atgtacatca aattttactc tgcatgagcc      4260
     ttttcgtgtt ctatgtaaaa attataacaa tctttatcat ttaatttgca cttcaacatc      4320
     tatccccgta ttgaaaacta aaattttatc tcatttgctt caatcttagt tgtagtattt      4380
     gtagtatttg gtttcatgtc ttttcctcgc gaactcgcat ttttgcccta attgataaag      4440
     ggtcccgcgc gtaacaagca cgtgcttggt atcgttgggc cacttgtttg tactgctcgt      4500
     agtgcatcaa cgtccatcat aataaataaa                                       4530
//
ID   CR1-1_AG    repbase;    DNA;    INV; 5401 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   22-JUL-2009 (Rel. 14.08, Last updated, Version 3)
XX
DE   CR1-1_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; endonuclease; CR1 clade; DNA/RNA-binding;
KW   CR1-1_AG.
XX
NM   CR1-1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5401
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-1_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 1-1 (2002).
XX
DR   [1] (Consensus)
XX
CC   CR1-1_AG is a family of CR1-like non-LTR retrotransposons. The
CC   CR1-1_AG consensus sequence was reconstructed based on multiple
CC   alignment of ~20 copies identified in the sequenced portion of
CC   the genome. Given the ~2% divergence of these copies from the
CC   consensus sequence, transposition of CR1-1_AG occurred less than
CC   1 million years ago. Integrations of CR1-1_AG have not produced
CC   target site duplications. The consensus sequence encodes two
CC   proteins: a 440-aa CR1-1_AG-ORF1p (positions 425 1745) and 941-aa
CC   CR1-1_AG-ORF2p (positions 1746-4568). CR1-1_AG_ORF1p is DNA/RNA
CC   binding protein composed of the PDH domain (aa positions 3-57)
CC   and gag-like zinc knuckle regions (aa positions 334-442).
CC   CR1-1_AG-ORF2p is composed the AP endonuclease and reverse
CC   transcriptase domains. The 3' terminus is composed of the CAT
CC   microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           425..1768
FT                 /product="CR1-1_AG-ORF1p"
FT                 /translation="MECLKCSAVVGTSDDPIICSGSCGFIFHRRCITPTLN
FT                 KPAVKLINENRNVVYMCDICLDQSAGLVHMDTDATKSNDLLAQTLRDLEAN
FT                 VSVWISSALERGIETLKTELCAQVERKLETTLRETLSAIEASKMSKAALRA
FT                 TSDTPQTSKTVQDVNLETWATVTKKRKRTNSGDSNVQTIINRFDEGNNKVT
FT                 PKIKKINDVKEPMGKNKENNKTLVIVPKVVQSCDRPRADLSARLDPRKQQL
FT                 SEFRNGRDGQVYAQCPALANLDSIRKEVEDILGDDYSTSLPMARVKIIGMS
FT                 EKYSSSDLVDLLKSQNEGIPWKQENVIGMFESKIYKYQIHNVVLEIDHETD
FT                 KCLAKLDKINIGFDRCKISRSIHVMRCFKCGQFSHKSTDCQNKEACSKCSG
FT                 EHRTSDCTSSILKCVNCVLANTSRNLKLQVQHAANSYECPLFKKQVERRMQ
FT                 LSQ"
FT   CDS           1746..4568
FT                 /product="CR1-1_AG-ORF2p"
FT                 /translation="RDECNFLNSRGGVELGRFREILYFNVAGLSSNYAMFR
FT                 ETVEKVQPLLVLISETHVTEKEAFEQFYLKGYRVVSCLSHSRHTGGVAAYA
FT                 RSDVVLKVILNESLEGNWFLGVAVSRGMTVGNYSILYHSPSASDSRFVDIL
FT                 EEWLDRFLDLSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMNQKVNEFTR
FT                 IARQSRTLIDQVYSSIDSIKVTTDPLLKISDHETLVLNINDERCKTIQRKV
FT                 KCWNRYSKHALCNNVSQGLQCGASDFDEAADLLWNTLKHAMSTLVEEKTIV
FT                 SRETSRWYTLDLARAKRKRDKVYKKFIRTNRDNDWSEYTKLRNSYSRDLKN
FT                 RRSDFFSNEINKHKKNSKELWKVLKSMLQPDESCVSVVKFNGVIEADDSII
FT                 CNKFNSFFVNSVLDINQNIASVSEPSYYVDSATPRCHFRFQKITLEQLKTI
FT                 CFNLTKTAGIGNVSSTTIQDCYHVIGEDLLMVINQSLERGCFPKSWKESLI
FT                 IPIPKVNGAANAEDFRPINMLHVLEKVLETVVKEQLVQFLNRNELLIREQS
FT                 GYRQGHSCETALNLVLARWRVLMDRRESIVAVFLDLKRAFETISRPLLLST
FT                 LRRFGIVGRELSWFESYLKERTQRTLFGSSVSEPIENTLGVPQGSVLGPIL
FT                 FIMYINDMKQVLKACEINLFADDTVLFISHKEIKQAESLMNIDLNALDGWL
FT                 KYKKLALNINKTCYMVMSAGVLEEPPSIVINSELIERVRQAKYLGVILDDR
FT                 LKFHAHIDWVIAKVAKKCGVISRLAKDLDFFGKVHLYKSLISPHFDFCSSI
FT                 LFLGNKGQIKRLQRLQNRIMRLILGCGRRTPSAVMLNILQWMSVEQRIVYQ
FT                 TMTFIYKMLKGLLPGYLGESIVRGSDIHRHHTRRANEPRVPNLHSQSARNS
FT                 LFFKGIQRYNSLPDEIKNARNLPDFKRKCVIYVEQTV"
XX
SQ   Sequence 5401 BP; 1641 A; 926 C; 1288 G; 1546 T; 0 other;
     tgatgagtga ctgttgacaa gtgcagttcg ttgacaagtg tgactgttta gctctgtgtt        60
     gtgacgtgaa ataagttgtg taaaatagag ctaagtgctc aaatttttag atacgtgtgt       120
     agataaatgt tcgtggatgc tctcggtgtc agtgtgtttt gcaaaggtaa aagtgacctt       180
     gttaaaaaaa caaaagattg gtgcggtcaa cagcgttccg ccgttggtgg cagtaaccga       240
     tccttgttgt gtagataagt gtttgtaccg tttttttatc catgtatgtg tgacaccggg       300
     agatacgtag agtagcatat tagtatagta gtgtttgtgt cgcttttggc cggcgtttga       360
     aaccaggtaa gcgaaaaaaa acacactttt ataagacttc gcccgtattt gttttttaca       420
     cggcatggag tgtttaaaat gctccgccgt ggtgggaacc agcgatgacc cgataatttg       480
     ttcagggagt tgtgggttta tttttcaccg tcggtgtatt acacccacac tcaacaagcc       540
     tgcggtcaaa ctaattaatg agaaccgcaa tgtcgtatat atgtgtgaca tttgtttaga       600
     tcaaagcgcg ggcttggttc atatggatac tgatgcaact aaatcaaatg atttgcttgc       660
     acaaacactg agggatttgg aagccaatgt gagcgtgtgg atttctagcg ctttagagag       720
     aggaatcgag actctcaaaa ctgagctttg cgcgcaagtg gagcgtaagt tggaaacaac       780
     tttgcgcgaa acattaagcg ctatagaagc ctcgaaaatg tcgaaggcgg ccttgcgtgc       840
     aacttctgac actccgcaaa ccagcaaaac agtgcaggat gtaaatttag aaacatgggc       900
     tacagtaacg aaaaaaagaa aaaggacaaa tagtggagac agcaatgttc aaactattat       960
     taatagattt gacgagggaa acaataaagt tactcccaaa attaagaaaa ttaacgatgt      1020
     gaaggagcct atgggaaaaa ataaagaaaa taataaaaca ctggttattg ttcctaaggt      1080
     ggtgcagtct tgcgatagac caagagctga ccttagcgcc agattggatc cgaggaagca      1140
     gcaattgtcg gaattccgca acggcagaga cggacaagta tatgcacaat gtcctgctct      1200
     ggcgaattta gatagcatta gaaaagaagt agaagacatt ttaggagacg attattcgac      1260
     atccttacct atggcacgcg ttaaaataat tggaatgagt gaaaaatatt cttcttctga      1320
     cttagtagat cttttgaaat ctcaaaatga gggaattccc tggaaacagg agaatgtaat      1380
     tggaatgttt gagagtaaga tctacaagta ccagatacat aatgtggttt tggaaatcga      1440
     ccatgaaact gataagtgtc tggcaaaact tgataaaatc aatattggat ttgatcggtg      1500
     taaaatttct agatccattc acgttatgcg ctgctttaaa tgtggtcaat ttagccataa      1560
     aagcactgac tgccaaaata aggaagcgtg ttcaaagtgc agtggcgagc accgaacgtc      1620
     ggattgcacc tcgtccatcc tcaaatgtgt aaattgtgtt ttggctaaca catccaggaa      1680
     cctgaaacta caggtacaac atgcggccaa tagctatgaa tgcccgctgt ttaaaaaaca      1740
     ggtagagaga cgaatgcaac tttctcaata gcaggggagg ggtggaatta gggcggttca      1800
     gagagatttt atatttcaat gttgccggtc tttcatctaa ctatgctatg tttcgtgaga      1860
     cagtagaaaa agttcaaccc ttgttggtct tgatctctga aacccacgta accgagaagg      1920
     aggcattcga gcaattttat ttaaaaggat atagggtagt gtcgtgttta tctcattcac      1980
     gtcacacagg aggtgttgca gcttatgcca gaagtgacgt tgtccttaaa gtgattttaa      2040
     acgagtcatt ggaaggcaat tggtttctcg gtgtagcggt ttctcggggt atgacggtag      2100
     gcaattatag catattgtat cactcaccta gtgcgagtga ttcgaggttc gtagatattt      2160
     tggaagaatg gttagacagg tttttggatc ttagtaagtt gaacattatc gtcggtgact      2220
     ttaatattga ctggttaaat gttgaaaaat ctgcgaaact gaaaagttta atggattcag      2280
     taaacatgaa ccaaaaagtc aatgaattca cacgaattgc taggcagagc aggacattga      2340
     ttgatcaggt ttacagtagt attgactcaa tcaaagtcac tactgatccg ttattgaaaa      2400
     tatcggatca cgaaacactt gttttgaaca taaacgatga acgttgtaaa acgattcaac      2460
     ggaaagttaa atgctggaat aggtattcga aacatgctct ttgcaataat gtgtcacaag      2520
     gcttgcagtg tggtgcatct gattttgatg aggctgctga cttgttatgg aacacattga      2580
     aacatgcaat gagcaccttg gtggaagaaa aaacaattgt ttctagagaa actagtaggt      2640
     ggtatacttt ggatctcgca cgtgctaaac ggaaaagaga caaagtgtat aaaaaattta      2700
     ttagaacgaa tagagataat gattggtctg agtatactaa acttagaaac agttatagta      2760
     gggatctcaa aaatagacga agcgatttct ttagcaatga aataaacaag cacaagaaaa      2820
     atagcaaaga gttatggaaa gtcctcaaaa gcatgttaca acctgatgaa tcatgcgttt      2880
     cagttgtaaa atttaacggt gtgattgagg ctgacgactc catcatttgc aacaagttta      2940
     actcgttctt tgtgaacagt gttttagata ttaatcaaaa cattgcttct gtcagtgaac      3000
     ctagctatta cgtagatagt gctactccac gatgccattt cagatttcag aaaattactc      3060
     ttgaacaact aaaaaccatt tgtttcaacc tgacaaaaac ggcaggtata gggaatgtaa      3120
     gttcaacaac catacaggat tgctatcatg tgatcggaga ggaccttctt atggtgatta      3180
     atcaatcact agagagggga tgttttccga aatcatggaa agaatcattg attataccta      3240
     ttcctaaagt gaacggagct gccaatgcgg aagattttcg ccccataaac atgttgcatg      3300
     tgctcgaaaa ggtgctggag acagtagtta aggagcaatt ggttcagttt ctgaacagaa      3360
     acgagctgtt gatccgagag caatcaggat atcggcaagg acactcttgt gagactgctt      3420
     tgaatcttgt actggcgagg tggagggtgt tgatggatcg gagggaatcg atagttgctg      3480
     ttttcttgga tctaaaacgg gcatttgaaa caatatctag gccattgttg ctttctacct      3540
     taaggcgttt tggtattgtg gggagggagc tcagttggtt cgaaagttat ttaaaagaaa      3600
     gaactcagag aactttattt ggtagctctg tatcagagcc tatagaaaac acccttggtg      3660
     ttccgcaagg tagtgttctt ggaccaattt tgtttatcat gtacatcaat gacatgaaac      3720
     aggttttgaa ggcttgtgag atcaatcttt ttgccgacga tactgttttg ttcatctcgc      3780
     acaaagaaat caagcaagca gagtctctga tgaatatcga tttaaacgct ctggatggat      3840
     ggctgaagta caaaaagctg gcattaaaca ttaacaagac ttgttacatg gtgatgtctg      3900
     cgggtgtatt ggaagaacct ccatctatcg taataaattc ggaactaatc gaaagagtta      3960
     gacaggctaa atacctggga gttatcctag acgacaggtt gaagttccac gctcacattg      4020
     actgggtcat cgctaaagtg gcaaagaagt gtggagtgat aagtagattg gcgaaggatc      4080
     tcgatttttt tgggaaagtt catctctaca aatcattgat ctcgccacac tttgacttct      4140
     gctcatccat tttgtttctt ggcaacaaag gtcaaattaa aagacttcaa aggttgcaaa      4200
     accggattat gaggttaatt ctggggtgcg gtcgacgtac gccgtccgcg gttatgctga      4260
     atattcttca atggatgtca gtagagcagc ggattgtgta ccagaccatg acttttatat      4320
     ataaaatgtt aaagggcctg ttgcctgggt acctggggga gagcatagtt cgggggtccg      4380
     atatccatcg gcaccacaca cgcagggcaa atgagccgag ggtacctaac ttgcattccc      4440
     aaagtgccag aaactctttg tttttcaaag ggattcaacg gtacaacagt ctaccagatg      4500
     aaattaagaa tgcgagaaac ttgccggatt tcaaacgtaa gtgcgtcata tatgttgaac      4560
     aaactgtata atgtgaaata tgtgtagatg tcccatgtca ttatgtaatg tgtaactgca      4620
     gttgtcatca cgatctttat gatgatgata agatttttct ttatatacta taattaaaat      4680
     tagaaaaaat ataagaaaga gtcaacatag gtttgagaca cgcgcgcgta caagtggata      4740
     ttcgggatct atttggggga atttacggtt tgcacacggt ctgggaggtc acaacaggat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttcacc tgcttcggaa      4860
     ggtagtgccc tagagccaat cattggcact agtggaactg gccatatgca tgttgcagtt      4920
     gtgttctgat aagtagtgcg ccggatccat tagttggttc ttggcgagct acgtaaggga      4980
     tacattagat tctcctgctt cggaaggtag tgccctggag cctgccattg gtgccagaga      5040
     ccctggggcc agcggttggc actagtggaa ctggccatat gcatgtcgca gttgtgtcct      5100
     gataagtggt gcgccagatc catttattgg ttcttggcgg gctacgtaaa ggatgctagg      5160
     gaataccatt gtattcgatg gagtatgacc cgttttttct tgatgaaact atgttggtca      5220
     tcttgggtgt gtgtatgact cggacagttc ctctgagagt tttccgatgc caccacttgc      5280
     tcgtacaaaa tattttaata tacctatcag agtaatatta tcgtaaagat acttccgtcc      5340
     ttctcaaacc tatgttgggg aaagaggtgg gacttatcat catcatcatc atcatcatca      5400
     t                                                                      5401
//
ID   CR1-1_BM    repbase;    DNA;    INV; 3410 BP.
XX
AC   .
XX
DT   30-JUL-2009 (Rel. 15.03, Created)
DT   30-JUL-2009 (Rel. 15.03, Last updated, Version 1)
XX
DE   CR1-1_BM autonomous non-LTR retrotransposon from silkworm -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3410
RA   Kapitonov V.V. and Jurka J.;
RT   "Young families of CR1 non-LTR retrotransposons from animals.";
RL   Repbase Reports 10(3), 528-528 (2010).
XX
DR   [1] (Consensus)
XX
CC   The consensus sequence is less than 1% divergent from several
CC   copies of CR1-1_BM.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..3162
FT                 /product="CR1-1_BM_1p"
FT                 /note="APE endonuclease and RT domains."
FT                 /translation="MIYFFSLSLMANLKIFYQNVRGLRSKTNLFYRNIILC
FT                 DNDIICLSETWLMPGIYDSELFDERFVVYRCDRNYNSRNDSLGGGVLIAVR
FT                 RGITVFNLTCLPSNRNRSADIISIKINIKHNNVSKLLHLYCCYFPQCSSQF
FT                 EDEIGFFEDISDTIITNPGDEFLCVGDFNIRNASWELIGVDGPARLLNGDR
FT                 WDSLVFGLSNFLAFNSFKQFNSISNINKRCLDLVISNCACKVVRSSLPLVS
FT                 EDDHHPALDIQIQGLDVRPLRSPGRSILLFHKSDYSIINEELSKIDWKQSF
FT                 MNLDVDMAVGKFHEILDKIISDNVPVKVVRGNSNFPYWYSSALIKLIKEKR
FT                 KFHRKWKCYGRLADYSSFSVLRERQKALKICCYNAHITKCEDDILKCSKQF
FT                 WRFVKSKRSAGDFPNELFLNDRCSSDGSEICNLFNVHFGSAFLTNNTQSAS
FT                 SLSYTPASYDLNCVDISSFFISVGKVKQYLKNLDISKGAGPDGIPPVFLRQ
FT                 CYAQLCYPLHLLFNHSLSTGVMPRIWKRSFVVPVFKSGDKHNIANYRPISK
FT                 ICAIPKMFERIVYDFLFPLIRPHIIEQQHGFISHRSTETNLCEFLDYVLSS
FT                 MEDGHQVDVVYTDYSKAFDRINFDILIEKLHGLGVHGDLLRWLESYVRDRS
FT                 QAVTFNGFCSSFAPVPSGVPQGSHLGPMLFNIYVNDVSNVFRKSKFIMYAD
FT                 DKKVYKVIKSLNDCLELQDDLNNLFVYCQNNLLTVNTNKCTIITFSRGRSN
FT                 ILYDYSINGQTLVRTTVVRDLGIYLDSSLIFDFHVNEIVNKAFRMLGFILR
FT                 VGKDFKRPSTLILLYNSFVRSILEYGSVTWNPQYNIYIQRLERVQKKFFKH
FT                 LLYHCRRFNSPEPTEFVSLVDRRLLRDQMFLYKIINNEIDSSYLLSKISFK
FT                 CSRISARSKQTFHMSTARTKYASNSFVRRSCRLYDAKFSNADIFCLSLVAY
FT                 RKAVLECL"
XX
SQ   Sequence 3410 BP; 928 A; 528 C; 650 G; 1303 T; 1 other;
     gactatttca gttttttgag aaacttttaa atgttttttt aactatttta ataacattat        60
     tatgtaaggc ttgttatgat atagcaacat acttattgtt tagcattgga gaatttttta       120
     ttttgttcgt ttggaacttt tactcctggg gtgggtgttt gattaatgtt gagatctata       180
     ttctcgtttg tgtaggtact tatgtattga catgtcaatt attatgctgt ggtttgagcc       240
     gtggactatt aatactgttg gttaattatt tatatgatct attttttctc tctctctcta       300
     atggctaatt taaagatttt ttaccagaac gttcgtggtt tacgtagtaa aactaatttg       360
     ttttatagaa acattatttt atgtgataat gatattatat gtcttagtga gacatggtta       420
     atgccgggta tttatgactc ggagttgttt gatgagcgtt ttgttgttta ccgttgcgat       480
     cggaactata actctcgaaa tgattctttg ggtggcgggg tacttattgc tgtgcgtaga       540
     ggaattaccg tttttaattt aacctgtctc ccttccaaca gaaaccgatc agctgatatt       600
     atttcgataa aaataaatat taagcacaat aacgttagta aactactcca tctttactgt       660
     tgctattttc ctcaatgttc ctctcagttt gaagatgaaa ttggtttttt tgaggatatt       720
     tctgacacaa ttattactaa tcccggtgac gaatttttgt gcgtcggcga tttcaatata       780
     aggaatgctt cttgggagct gatcggtgtt gatggacctg ctagactctt gaatggtgat       840
     cggtgggact cacttgtctt tggtctttct aattttttag cttttaatag ttttaaacaa       900
     tttaattcga tttctaatat aaataaaaga tgcttagatt tagtaataag taattgtgct       960
     tgtaaggttg ttcgttcgtc ccttcctctt gtatctgagg atgatcatca tccagcctta      1020
     gatattcaga ttcaggggtt agacgtgaga cccctacgtt ctcctggccg gtccatattg      1080
     cttttccata aaagtgacta ctctattatt aacgaggaac tttcgaaaat tgattggaaa      1140
     caatctttta tgaatttaga tgtcgacatg gccgtgggca agtttcatga aatcttagac      1200
     aagattattt ctgataatgt gcctgtgaag gtcgtaagag gtaactccaa tttcccttac      1260
     tggtactcct ctgctttaat caagttgatt aaagaaaaaa gaaaatttca caggaaatgg      1320
     aaatgttatg gtcgattggc cgactattca agtttttctg ttcttcgtga aagacaaaaa      1380
     gccttaaaaa tttgctgtta caatgcacac ataacaaagt gtgaggatga tatcttgaag      1440
     tgcagtaagc aattttggag atttgttaaa tccaagagga gtgctgggga ttttcctaac      1500
     gaattgttct taaatgatag gtgctcatct gatggttctg aaatatgtaa tttatttaat      1560
     gttcattttg gttctgcctt tttaactaac aatacacagt cagcatcatc gttaagttat      1620
     acccctgctt cttacgacct taactgtgta gatatttctt cattttttat ttcggtgggt      1680
     aaagtcaagc aatatttaaa aaatcttgat atttccaagg gtgctggtcc ggatggtatt      1740
     ccgcctgttt ttttgcgaca atgttacgct cagctgtgtt accctttgca tcttcttttt      1800
     aatcactcat tatcaactgg tgttatgccc cgtatttgga agcggtcgtt cgtggtgcca      1860
     gtctttaaga gcggtgataa acataacata gctaactaca gaccaatttc taaaatttgt      1920
     gccatcccta agatgtttga acgtatagtt tatgattttt tatttccatt gattaggcct      1980
     catattatag agcaacagca tggttttata agccatagat ctactgagac aaacctctgt      2040
     gagtttttgg attatgtatt gagctccatg gaggatggtc atcaggttga tgtggtgtac      2100
     acggattatt ccaaagcgtt cgatcgaata aattttgaca ttttgattga gaaattgcat      2160
     ggacttgggg tccacggtga tttgctgcga tggcttgagt cttatgttag agatcgcagt      2220
     caggctgtga ctttcaatgg tttttgttca tcatttgcac ctgttccctc gggagttcct      2280
     cagggctctc atctcggtcc tatgttattt aatatatatg tcaatgacgt ttcgaatgtt      2340
     ttcaggaaat ccaaattcat tatgtacgct gatgacaaaa aagtatataa agttataaag      2400
     tccttaaacg actgtttgga attacaggat gatttgaaca acttatttgt ttactgtcaa      2460
     aataacttac tcacagtgaa tactaataag tgtactatta taacattctc acgtggaaga      2520
     tcgaatatct tgtatgacta ttctattaat ggtcaaactt tggtacgcac cacagttgtt      2580
     cgtgatttgg gtatttattt ggattccagt ttgatttttg attttcatgt taatgaaata      2640
     gtaaataagg cttttcgaat gttaggcttc atacttagag ttggtaaaga ctttaaaaga      2700
     ccatctactt tgattctgtt gtacaacagt tttgtacggt ctatattgga atatggctcc      2760
     gtcacatgga acccccaata taatatttat attcagcgac tagaaagagt ccaaaaaaag      2820
     ttttttaagc atcttttata ccattgtcgt cgctttaact ctccagaacc gacagaattt      2880
     gtctctctag tcgatcgcag gctactgagg gatcaaatgt ttttatataa aataataaat      2940
     aacgagattg attctagcta tcttctttcc aaaatttcat ttaaatgtag tcgtatttcc      3000
     gcgcgttcta aacagacctt ccacatgtcc acggctcgaa cgaaatatgc ttctaactct      3060
     tttgtccgta gatcttgtag gttgtatgat gctaagttct ctaatgctga tatcttttgc      3120
     ttgtcacttg tagcatatag aaaagctgtt ttggagtgtt tatagggtga tttggcccga      3180
     taagtgttgt agttttatag tgtgagttaa tgtataaaat gatatgtgcg tattgtgttg      3240
     cttttgtttt tttktttaat ttaaatttct aaatttctct tcttgttcac tgtctactta      3300
     tatgtgattt tgattgtgga aacatatttg gttattgttt tagctatatt ttttaaatat      3360
     tgtatgtttt gtattgtact gtttgtttcc caaataaata aataaataaa                 3410
//
ID   CR1-1_BTa   repbase;    DNA;    INV; 4119 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4119
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 618-618 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..1073
FT                 /product="CR1-1_BTa_1p"
FT                 /translation="KCYIFACSKGSFLAFYRQLTEFFVLKCYRQPNLKMST
FT                 KCGTCDKVFGTKPIIACGHCSSLFHLECAGLSSTEIRTTELKSLEKKLVYM
FT                 CGECKRYGDNSSLKDTLALLLDDMSALKSQVSTFTLISDDVEKLKGELKSN
FT                 EESIMAISSRVNNMEDKIKSVSSELLALKSSVNCEPAILGANVDGVLQEVE
FT                 ERKRRACNLIMYGVRQARSEDEDKAAVLKLLSKIKDLKVGGMRIIRLKSNA
FT                 TDKRKPVKIIFPSRSDVMKVLRGKALLPKGVSVASDKTMAXRQYLVKLSKA
FT                 KDEHNLXFPDDQKSIKYIRGTPKLVSNKLDAVAGASSSXSGGK"
FT   CDS           1077..3959
FT                 /product="CR1-1_BTa_2p"
FT                 /translation="CQASDAQIQIXYANAGGLRSGDKLLNLRTFFNSLTIK
FT                 PDILVVTETWLNSSXFSGELGLGGCTVYGSDRVYDDXIQRGGGVLIAVKNS
FT                 LKSCRLIVPPLEGYSSHLFVKLSLAPVVIIGGTYIPPRSNXTVYRDHSLVV
FT                 STLADQCPDAKLMLFGXYNLSKIAWSSSLPLCAECTSYVDPNGIDAVNHVA
FT                 XVFTCLSLNQXFPAHPSKGYTLDLFSNVDSIFVSDPPDDFVFKSNDNHCPK
FT                 LFSFPHKSFASLKPKLFYKNFFSCDYGPIITXLSGIEWSSLFKDKSLDEMV
FT                 DILSEELNEVVAELVPTSCKRPDANFPVWYDKELIKITMDKRXYHFLWKSN
FT                 SEMRXYILFKKLRAQXIRKSRELYKSXILKVESNCKSNLKASWSFVNNFNK
FT                 TASIPDVMRLGDRNSDSLSTSVNLFADFFGSTYRPSPLSPSLDSGYEGSTC
FT                 FPNITEETVLNAINSTKPNGSVGPDGIHPFFVSNCSEVLAKPLSLLFDKSL
FT                 SSGYFPSAWKVSYITPIFKSGDEHDVKNYRPISIISVIPKLFDKIVSNMLY
FT                 EAFAEKICLQQHGFVRGRSTVSNLAVYCDFIAEALDMSQQVDAVYTDFSKA
FT                 FDSVSHNLLIDKLKDLKLQSNILHWFQSYLTGRTQMVRVHGVISKLIYVLS
FT                 GVPQGSHIGPILFLIFINDLVLNLRFVRSLLFADDLKLYAVIRSVADSILF
FT                 QQDLDYLGEWSLRNDLPFNVSKCSVITFSKHRAPAHFEYAISGSILNRVHL
FT                 VKDLGVTFSSDFSFSEHIDLVTLKALRLFGFIRRVSAHFRVGTILYLYKSI
FT                 VMPILTYASPIWSPHTRQGWDKIESVQHHVLRFLSFKLNRPMSIYDHDYSK
FT                 ISEALNVPTLESRHHTYDLALAFRVLGGHISAPDLSQLFQVREVNYSLRVA
FT                 RPLFDNPARTSYRFHSVVVRVKRRWNLLSPGLADASLETNLFKSRVKDYXL
FT                 KYYVPY"
XX
SQ   Sequence 4119 BP; 1067 A; 795 C; 843 G; 1392 T; 22 other;
     ctctcctgac aactttattt gaacaattaa ctgagtcaat gtcttgtgtt tttacttttt        60
     tcatataaaa gtgctacatt tttgcttgtt ctaagggctc gtttttggca ttttatcggc       120
     agctgactga attttttgtc cttaagtgtt atcggcaacc taacctcaaa atgtccacca       180
     aatgtggtac ttgtgataaa gtgttcggta ctaaacctat cattgcctgc ggacattgtt       240
     ccagcctttt tcacttggaa tgtgctggcc tttcctccac ggaaattcgt acaactgaac       300
     ttaaatctct tgagaaaaaa cttgtttata tgtgtgggga gtgcaaacgc tatggtgata       360
     actcttccct aaaggataca ttagcattgc ttctggatga catgtcagct ctaaagtctc       420
     aagttagtac atttacactc atttctgatg acgtggagaa gctgaaaggg gagttgaaat       480
     ccaatgaaga atctataatg gcaatatcct ctcgtgtaaa caatatggaa gataagatta       540
     agtctgtatc aagcgagcta ctggcgctta aatcctctgt caactgtgaa ccagccatac       600
     ttggggcaaa tgtcgatggt gttcttcagg aagtggaaga aaggaagcgg agggcttgca       660
     acttaatcat gtatggcgtc cgtcaagcta ggtctgagga tgaagataag gctgctgttt       720
     taaagttatt aagtaaaatc aaggacttaa aggtcggtgg aatgcgcatt atcaggttga       780
     aatccaatgc taccgacaag cggaagccag taaagattat atttccgtct cggtctgatg       840
     ttatgaaagt tcttagaggt aaggctcttc tccctaaggg ggtgtcggtt gctagtgata       900
     agactatggc gmaaagacaa tatctggtaa agctatccaa agctaaagac gaacacaatc       960
     taamgttccc tgatgatcaa aaatcaatta agtacatacg aggtactcca aagttagtta      1020
     gtaataagct ggatgcggta gcaggggctt cttcctcccw atcgggaggg aagtgatgcc      1080
     aggcgtctga tgcacaaatt caaattcwgt atgccaatgc agggggctta cgctcaggtg      1140
     ataaacttct taatcttaga acttttttta atagtcttac aatcaagcct gacattctcg      1200
     tcgtcactga gacttggtta aatagttctk ttttcagtgg agagctgggt ctgggtggtt      1260
     gtactgtcta tggatctgat cgcgtatatg atgatgawat tcaaagaggc gggggagtat      1320
     taattgcagt caaaaattct cttaagtctt gtcgcttgat agttcctcct ctagaaggct      1380
     actctagcca cctgtttgta aaattgtcwc ttgctcctgt cgttattatt ggtgggacgt      1440
     acattccccc ccgctcgaac tmtacagtat acagggatca ttccctggta gtaagtacct      1500
     tagcagatca gtgcccwgac gctaagttaa tgctctttgg asattataat ctgtctaaaa      1560
     ttgcttggtc cagttctttg cccctttgtg ctgagtgtac aagttatgtg gatcctaatg      1620
     gtattgatgc tgtaaatcat gtagcawccg tgtttacctg cttaagttta aaccaakttt      1680
     ttcctgccca tccgtccaaa ggatacacct tggacttgtt ttctaatgta gatagcattt      1740
     ttgtttctga cccaccagat gattttgtat tcaaatcgaa tgataaccat tgtcctaaat      1800
     tgttttcttt tcctcataaa tcttttgcat ctcttaagcc taagttattt tataagaact      1860
     tcttttcttg tgattatggc ccaattataa ccwgattatc tggaattgaa tggtcctcct      1920
     tatttaaaga taaatcwctt gatgagatgg ttgacattct cagtgaggaa ttaaatgaag      1980
     ttgtagctga gcttgttcct acttcwtgca agcgccccga cgccaatttt cctgtctggt      2040
     atgataagga gctcatcaaa attacaatgg ataaaagatt mtatcacttc ttgtggaaat      2100
     cwaatagtga aatgagasac tacattctat ttaagaaact aagagctcag tktattcgca      2160
     agtcccgtga attgtataag agtwatatac ttaaggtgga gtcaaactgt aagtctaatt      2220
     taaaggcttc ttggtcattt gttaataatt ttaataaaac tgcgtccata ccagatgtga      2280
     tgagattggg cgaccggaat tcggactctt tgtctacttc agttaatttg tttgcagatt      2340
     tcttcggttc tacctaccga cccagtccac tctcaccttc tcttgattct ggttatgagg      2400
     gttccacttg ctttcctaac ataactgaag aaacagttct taatgctatt aattccacca      2460
     agccgaatgg tagtgtcggt cctgacggga ttcatccttt ttttgtttca aattgttcgg      2520
     aggtcttagc caagcctctg tctctcttgt ttgataagtc cctgtcatcg ggatactttc      2580
     cgtcggcttg gaaagtctca tatattaccc ctatttttaa gtccggagat gagcacgatg      2640
     taaaaaatta tcgtcctatt tctattataa gtgtcattcc gaaacttttt gataagattg      2700
     tgtctaacat gctgtatgaa gcttttgcag agaaaatatg cttacagcag catggctttg      2760
     tgaggggtcg ctctacagtg tctaatttag cagtgtactg tgacttcatt gctgaagctc      2820
     ttgacatgtc acaacaagtg gatgcagttt atacagattt ctctaaagct tttgacagtg      2880
     ttagtcacaa tctcctgatt gataagttga aggatttgaa acttcaaagt aatattttac      2940
     attggttcca atcttatcta acaggtagga ctcaaatggt tagggttcac ggtgtcattt      3000
     ccaaacttat ttatgtgctg tccggcgtgc cacagggatc tcatataggg cccattttgt      3060
     tcctcatctt tatcaatgac cttgtcttaa atttgcgttt tgtgagatcc ttactctttg      3120
     ccgatgattt aaaattgtat gctgtcattc gtagtgtggc ggattctatt ttgttccagc      3180
     aagacctgga ttaccttgga gaatggtcgt tgcgcaatga tctccctttt aatgtttcta      3240
     agtgttctgt aataaccttc tccaagcacc gagcccctgc tcattttgag tatgctatta      3300
     gtggttctat tctgaaccgg gttcatttag ttaaggatct aggtgttaca ttttcttcag      3360
     acttctcatt tagtgagcat attgatttag ttacccttaa ggctcttaga ctttttggct      3420
     ttatccgtag agtttctgcg cattttagag ttggtacaat cctctacctg tataaatcca      3480
     tcgttatgcc aattctaacg tatgcatctc caatatggtc tcctcataca cgccaagggt      3540
     gggataaaat cgaatccgtc cagcaccatg tgcttcgttt tttgtcattt aagttaaata      3600
     gacccatgtc catatatgac cacgactata gtaagatctc tgaggctttg aacgtcccaa      3660
     cgttggagtc taggcatcat acctatgacc tcgctttggc gttcagagtc cttggaggtc      3720
     atatttcggc tccagatctg tctcagctgt ttcaggtgag ggaggtcaac tactccctga      3780
     gagttgcccg tcctttattt gacaaccccg ctaggacttc ttaccgtttc cactcggtgg      3840
     ttgtcagagt aaagaggcgg tggaacctac tgtcgcctgg gctagctgat gcaagtctgg      3900
     agacgaacct gtttaagtct agggtcaagg actacktttt gaaatactat gttccctatt      3960
     agttatattc attgtattgt acttttgttt gttttgtttt atttgtcagt wgagtctatc      4020
     atttgttcag ctgttttgct cttttttgtt aattactttt gtaattgggc aacttgcccg      4080
     ttttgtataa taaataaata aataaataaa taaaataaa                             4119
//
ID   CR1-1_CQ    repbase;    DNA;    INV; 4887 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4887
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 1-1 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..1822
FT                 /product="CR1-1_CQ_1p"
FT                 /translation="MQCYVPTCSSPFDQQYLWNCTGICNRKFHAACIGVKR
FT                 GSEDDLQLHVLPICSLCRNNLHMEIDIRKIMQHHLEGSHMILTHIKTNDKT
FT                 NQEALNELHNKIIGLQEEIKKSAEIASRILSAVLTQAPAMDFPLNEVRKAF
FT                 EDTTSDQNQKLAESFCRIQEITSSHRDDIIKTIASAEKCPSDIILAVHDEV
FT                 RALTSSINKLQDNEIEVRQKSLAEELNEQTVLEIESGWRLIGSKKIWKPDW
FT                 TDFDARQRTRRLQEKEAEKARRRNRKHRQQIQHQQQQQSQQHHQQRRQQQH
FT                 LQQQQSHQHLRRQQHQTNCNSDAGRNPSTPHFNLKDNQFDQDNASSSNFFT
FT                 HSSTKLSDKELLDQARVEFSGQPPTTSNSNFINFRKGETINPYRKEKTPIV
FT                 PPLNATTPQPAKTSSQTPEVTDSMFCLDPMKPPIVRLTEQSAVGDGRFLLA
FT                 RLREIKVYDNLRLYLAYLKDQKPDVCIDGLTLTSMHVFFASNGLPTEPEHL
FT                 MNIFMEYNSTIGISPKQTLTDLETYRKYVTTRRLQYLQHSREAANKFYLPT
FT                 TSSNFYKH"
FT   CDS           1849..4824
FT                 /product="CR1-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTPSQEAVSTINNLSMSPKISSTEQQNANEILIYCQN
FT                 FNRMKSPGKMKEISLNILSHSFDIILGTETNWDESVHPEEIFGNNYFVFLG
FT                 NRNLNLSQKKSGGGVLLAINARLNPKEIVTEKHFQFEQVWAKATIAGQVHI
FT                 FASVYFPPDHANKQSYELFFKTVEIITSKMEPEVKLHIYGDFNQSKVEFIS
FT                 DQENEAILLPVIGENETLHFLFDNIANYGLFQINHVKNQRNSFLDLLFTNC
FT                 IEDFHVQESVTPLWKNEVFHTAIEYSIYVHKNTLPIDWEYEEVLEYNKTNF
FT                 VEAKRKLLAIDWQNLFNNEGNVDELVGKFYTEINTITSETVPTRRRRRNNT
FT                 GNKYPVWFTPQLRNLKNRKQKAYKLYRNNTNDTNLLNYLNISDHFFSALNS
FT                 ANEEYNSKVESEVKSCPKNFFNYVKSKSKSSNFPSQMQLDENVGSNSKEIC
FT                 NLFSKFFKEVYTSFSEEDRDRDYFSYIPEFPNDVSVNSLSETEVRQALKDL
FT                 DSSKGPGPDGIAPAFLKNLAEELTYPLHHLFNMSINTGKFPQTWKKSFLVP
FT                 IFKSGPKSDIRNYRGIALLSCIPKLFESIINEKIFQQVKNRITCKQNGFFK
FT                 GRSTSTNLLEFVNFTLNAMHNRNFVEAIYTDFSKAFDRIDIPLLIFKLQKI
FT                 GIQPNLLEWLKSYLTKREQIVRFQNVLSESIHVTSGVPQGSHLGPLLFILY
FT                 VNDISFILKKINVLVYADDMKLYMEIGNANDSHVFQNEINLFYTWCSKSLL
FT                 QLNVKKCNSIAFSRKHETPNITVLLGNQPVEKCKVVRDLGVILDSQLTFVE
FT                 HYNTIINKAKSTLGFIKRFAFNFQDPYTIKLLYITYVRPLLEYCSIVWNPY
FT                 YAVHQARIESVQKQFLLYALRKLNWTAFPLPSYEARCMLINIQSLQERRKF
FT                 AMLSFINDIISQRIQSAALFSVIRNSIHEPSRTLRNSPLFRITAYTTNYLK
FT                 NSPLNQMMRFYNENSQYIHFDMSKPELRKNLYNRNNI"
XX
SQ   Sequence 4887 BP; 1748 A; 1108 C; 786 G; 1245 T; 0 other;
     gcagttgagt ctttttaccg gacggacgcg ttttttaatt cgctctacac tttattttta        60
     tttaccttca ctgacccagt ccacaaacgt aaacgtaaac atatttattt ttttttgtcg       120
     cgcgtcgcgt gtgcacttat taacaaacgt aagcaaaatg cagtgctatg tgccgacgtg       180
     ctcttcaccc ttcgaccaac aatacctctg gaactgtacg ggcatttgta atcgaaaatt       240
     tcacgcagcc tgtattgggg tcaagcgtgg ctccgaagac gacttgcaac tacatgtact       300
     tcctatatgc agcctttgtc gaaataacct acatatggaa atcgacatta gaaaaataat       360
     gcagcatcat ttagaaggca gtcatatgat cttgactcac atcaagacca atgacaagac       420
     aaaccaagaa gcccttaatg aactgcataa taaaatcata ggcctgcagg aagaaattaa       480
     gaaatctgca gaaatcgcaa gtcgaatact ttcggcagta ttaacacagg caccggcaat       540
     ggacttcccc ttaaacgaag tcagaaaagc atttgaagac accacctcgg accagaatca       600
     aaaactcgct gaatcattct gccgtatcca ggaaattacg tcatcccacc gggatgacat       660
     aattaaaaca attgcctcag cagaaaaatg cccctcggac ataattttag cagtccacga       720
     tgaagtgagg gccctcactt catccatcaa taaactgcaa gacaatgaaa ttgaagtccg       780
     gcaaaaatca ctggcagaag aattaaacga acaaaccgta ctggaaatcg aatctggctg       840
     gcgacttatc ggcagcaaaa aaatttggaa gccagactgg accgacttcg acgccaggca       900
     gcggactcgc cgtcttcagg aaaaggaagc cgaaaaagca cgtcgccgca accgaaaaca       960
     tcgtcaacaa attcagcacc agcaacaaca acaatcacaa caacatcatc agcaacgccg      1020
     gcaacagcaa cacctgcagc aacaacaatc acatcaacat cttcgtcggc aacagcacca      1080
     gaccaactgc aactctgacg caggccgaaa cccaagtacg ccacatttta acttaaagga      1140
     caatcaattc gaccaggaca acgcaagtag cagcaacttt ttcactcatt cgtcaaccaa      1200
     attgtccgac aaggaacttc tagaccaggc aagggtcgaa ttttctggcc aacctccaac      1260
     tacatcgaat tcaaacttca tcaacttccg aaaaggggaa accatcaacc cctaccggaa      1320
     ggaaaaaacg ccaatcgtcc cacctctaaa cgccaccacg ccgcagccag caaaaacgtc      1380
     atcacaaact cctgaagtaa cagacagtat gttctgtctg gacccaatga agccgcccat      1440
     agtacgccta actgaacagt ctgcagtcgg cgatggccgt ttcctgctgg ccagactccg      1500
     cgaaattaaa gtctatgaca atctcagact atacttggcg tatctgaagg accaaaaacc      1560
     ggacgtctgc atagacggac taacactaac cagcatgcat gtcttttttg catccaatgg      1620
     cctgcctact gaacctgaac atcttatgaa catcttcatg gaatacaact caacaattgg      1680
     aatttcacct aagcaaaccc tcaccgacct ggaaacctac aggaaatatg taacaactag      1740
     aagacttcaa tacctgcagc attcgcgcga agccgccaac aaattttacc tgccgactac      1800
     atcgtcgaat ttttacaagc attgacgcct tctaacacgg aagaagaaat gacaccctcg      1860
     caagaggcag taagtactat taataattta agtatgtctc caaaaatttc ttcaacggaa      1920
     caacagaatg cgaatgaaat tctaatttat tgtcagaatt tcaatcgcat gaaaagccca      1980
     ggcaaaatga aggaaatttc tttaaacatt ctctcacatt ctttcgacat tattcttgga      2040
     actgaaacta actgggacga aagcgtccac cctgaagaaa tttttggaaa caattatttt      2100
     gtattcctag gcaatagaaa tttaaatctc agtcagaaaa agtcaggagg cggcgtcctc      2160
     ttagccataa atgccagact taatccaaaa gaaattgtaa ctgaaaaaca ttttcaattt      2220
     gaacaagtct gggccaaagc cactattgca ggccaagtac acatttttgc atcagtatac      2280
     tttccgccgg accatgcaaa taaacagtcg tatgaactat tctttaaaac agtagaaatc      2340
     ataacatcaa aaatggaacc ggaagtaaaa cttcacattt atggcgactt taatcaaagc      2400
     aaagtcgaat ttatatctga ccaagaaaat gaagcaattc ttctcccagt cattggggaa      2460
     aatgaaactt tgcattttct ctttgacaat attgcaaatt atggactttt ccaaatcaat      2520
     catgtaaaaa accaaagaaa ttcattttta gaccttttat tcactaactg tattgaagac      2580
     tttcatgtac aagaatctgt aacccccctt tggaagaatg aagtcttcca tacagcaatt      2640
     gaatattcta tttatgtcca taaaaacact ttgcccattg actgggaata tgaagaagtc      2700
     ctggaataca ataaaacaaa ctttgtagaa gccaaacgta aactacttgc aattgactgg      2760
     caaaatttat ttaataatga aggaaatgtc gacgaattag taggaaaatt ctatacggaa      2820
     attaacacta taacatctga aaccgtacct actagaagaa gacgacgtaa taacacaggc      2880
     aataaatacc cagtgtggtt cactccacaa ctaagaaatt taaaaaatag aaaacaaaaa      2940
     gcctacaaac tatacagaaa caatacaaat gacacaaatc ttctgaatta tctgaatatt      3000
     tccgaccatt ttttttcggc actcaattct gccaacgaag aatataatag taaagtcgaa      3060
     tctgaagtca aatcatgccc gaaaaatttc tttaattacg taaaatccaa atccaaaagt      3120
     agtaacttcc catcgcaaat gcaactggac gaaaatgtag gcagtaactc aaaagaaatt      3180
     tgcaatcttt tttcaaaatt tttcaaagaa gtatacacct cattttccga agaagaccgc      3240
     gaccgcgact acttttcata tataccggaa tttccaaatg acgtctcagt caattctttg      3300
     tcagaaacgg aagtacgcca ggcattgaag gacttagact catcaaaagg accaggaccc      3360
     gacggaatag cacctgcatt cctaaagaac cttgcagaag aattgacata tccactgcat      3420
     catcttttca acatgtcaat aaatacagga aaattcccac aaacatggaa aaagtctttt      3480
     ttggtgccta ttttcaagtc aggcccaaaa tcagacatac gtaattatcg cggaattgcc      3540
     cttttgtctt gcattccaaa acttttcgaa tctattataa atgaaaaaat ctttcagcaa      3600
     gtaaaaaacc gcatcacatg taaacagaac ggctttttta aaggccgctc tactagcacc      3660
     aaccttttag aatttgtaaa ttttacactg aatgcaatgc ataatcgcaa tttcgtagaa      3720
     gcaatttaca cagactttag taaggcattt gacagaatcg acataccatt attaatcttc      3780
     aaactgcaga aaattggaat tcaaccgaat cttttggaat ggcttaagtc atatttgact      3840
     aagcgcgaac aaattgttcg cttccaaaat gtactatcgg aatcaattca cgtcacctct      3900
     ggggttccgc aaggatccca tctaggacct cttcttttca tcttgtatgt aaacgacatt      3960
     tccttcattc ttaaaaaaat taacgtactt gtatatgcag acgacatgaa attgtatatg      4020
     gaaataggaa atgccaatga cagtcatgta ttccaaaacg aaattaatct tttctacaca      4080
     tggtgtagta aaagcctact ccaattgaat gtaaagaaat gtaattccat tgccttcagc      4140
     agaaaacatg aaacaccaaa cataacagta ttattaggaa accaaccagt agaaaaatgc      4200
     aaagtagtac gtgatctagg tgtcatccta gactcacaac taacttttgt agaacactat      4260
     aacacaataa taaacaaggc aaaaagtaca ttaggcttta taaagcgctt tgcattcaac      4320
     ttccaggacc cgtatactat taaattactc tatataacgt atgtcaggcc actcttggaa      4380
     tactgtagta tcgtctggaa tccatactat gccgtacacc aagcacgtat tgaatctgtc      4440
     caaaaacaat tcttactgta cgcactacgt aaacttaact ggactgcatt tcctctccca      4500
     tcgtatgaag cacgctgcat gctcataaac atacaatcat tacaagaacg tcgtaaattt      4560
     gccatgctct ctttcatcaa cgacattatt tctcaacgca tacagtcagc agcattattt      4620
     tcagtaatac gcaatagtat tcatgaacca agccgtactc ttagaaattc accacttttt      4680
     agaataactg catacacgac aaattattta aaaaattcgc cattaaatca aatgatgcgc      4740
     ttttataatg aaaattcaca gtacatacat ttcgacatgt ctaaaccgga actacgaaaa      4800
     aatctgtaca atagaaataa tatctagtat gtaagaaaat tgtaagtagt ctacataagc      4860
     ttgacgaata aacaataaac taataaa                                          4887
//
ID   CR1-1_DAn   repbase;    DNA;    INV; 4452 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4452
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 374-374 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..868
FT                 /product="CR1-1_DAn_1p"
FT                 /translation="MSPLVCSECSGEVTATQLRGCEAVRCSSICRRAYHTD
FT                 CVDLPSEAIKLLINIPNLLWQCDSCVIGNDSHSKIDELNMKVLDLESLYMS
FT                 INAKLDLALESSSGPMAASEGSQRVTPPTTSTNAENKKSSLAQIPTGSKVA
FT                 VPRNKRNNPSRRIVGHAPSCAQLQVLPSLKYLHIGKFATATQPEALCKYVA
FT                 DKLQLDPSDVACARLVKKDADINALKFVNFKLGVPEQHFPAVFKVDFWPMS
FT                 VKVTRFLHREPAKVIDLPARLPRSNPGASKNPQ"
FT   CDS           1017..4373
FT                 /product="CR1-1_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MHYLLQQQQLIPRWAVCILSSLVDLQQQQMVRYRLIV
FT                 SPSLFILSFLDGWSTVRLTTRAHFSASGGNVCLHHGLERRASLRVDAQNSM
FT                 SSISLAVPATGFVGRLDIHMSNLEINENLCVSTLAILEAMRLGYVASSIRT
FT                 LPVPSHIPHSRPIPSVDCMDRAALGSNKSLRVFFQNISGMRTKSRMVLLNS
FT                 SVCDFDVIVLVETWLNSNFSSSEFFEPKMFQVFRKDRDSSSTHCERGGGVI
FT                 IAIRRSMLATVVSLKVGDPILDQLAVSIQGIQGPFIIIASYIPPNSAFSTY
FT                 QAHMENIASVYGSMEDPMALMVAGDFNLSSIVWTWDPESVGMLPSNVHQSH
FT                 EIVVLDDIFSMGLSQVNNIYNDLSKILDLIFLNNVVHSKVEICNVPLSPCD
FT                 MHHKPLLIHIEFYSFLPSPSPISYYHFNESNLSLINNAIVSFDWVSLFSDG
FT                 TIDDCYTKFLIALFNIIDNNASVRVRRSFKLPWYTEGLKNLKNRRDKFYKR
FT                 FLKTGELMAGELYRQYKREFEFLNKFLYNQYITDVEASLISNPKAFWRFVN
FT                 GKKSSSDIPSAMSYGGLAANSDKGISELFAKYFASNLEPKVSWDEREVLQK
FT                 ILPLLEVGCLDILDCDIVEASSHFNESHTPDLDGISPFFIRKCIASLTTPL
FT                 QLLFTLSLSSGKFASRWKITSISPIHKGGSRADVTNYRPIAKICNIAKLLE
FT                 RIVTKKLTFLIRNFISHNQHGFLPGRSTTTNLVVFSKHCLEAFERRCQVDA
FT                 VYTDFSKAFDKVCHAALLAKLFRLGVHSSMLSWLESYLADRPCHVPIGDAT
FT                 SSPFIASSGLPQGSSLGPLLFIIFINDISSCFLYSDFLLYADDLKVFKAIS
FT                 CIRDSYLLQDDLRRVSSWCALNLLPLNLAKCHFIRYSKRALDLCTSYAIGN
FT                 HDLQLKEEVVDLGVLFDSNFKFSSHLDFIMPKAYAMLGFVKRHTDQFKSPY
FT                 AKLSVYAAFVRSRLEYASIIWSPANKISSNRVERLQKKFLKFALLPLRFVD
FT                 PLPSYHSRCLLLHICTLEDRRTVAALTFINNIVISSIDCPMLLELINFNVP
FT                 QRDLRSFAPFRIACRRANYLLNEPIDRALSFFNTLPPSLRTKWGSDKQAFR
FT                 VLLVRHFLSSM"
XX
SQ   Sequence 4452 BP; 1102 A; 1014 C; 944 G; 1392 T; 0 other;
     cattctcagt ctagctttcc ttgcgttcgg acgtttattt tttgctatgt cgccgctcgt        60
     ttgttcggag tgcagtgggg aagttactgc tacgcagctt cgtgggtgtg aggccgttcg       120
     gtgctcatcg atctgccgcc gtgcctatca taccgattgt gtggatttac catccgaggc       180
     tattaaactt ctaataaaca ttccaaactt actgtggcaa tgtgatagtt gcgtcattgg       240
     aaacgactct cattcaaaaa ttgatgagct taatatgaag gtcttggacc tggaatccct       300
     ttacatgagc attaatgcga aattggatct tgctcttgaa agttcgtctg ggcccatggc       360
     tgcttcagag gggtctcaga gagtgacacc ccctactact tctactaatg ctgaaaataa       420
     aaagtcatca ttggcccaga tccccactgg gtcaaaagtg gccgtcccaa gaaataagag       480
     gaataaccct agcaggcgca ttgtcggaca tgcacccagt tgtgcgcagc tccaagttct       540
     tccctctcta aaatacctgc acattggtaa atttgcaacg gctacccaac cggaggcgct       600
     gtgcaaatac gtcgctgata agttgcaact ggaccccagt gatgtagcct gtgctagatt       660
     ggttaaaaaa gatgctgata tcaacgctct aaaattcgtc aactttaaat tgggagttcc       720
     cgagcaacat ttccccgctg tcttcaaggt tgatttctgg cccatgtcgg taaaagtcac       780
     tcgttttctt catagagagc ctgctaaggt tattgacctc cctgcgagac tccctcgatc       840
     aaaccctgga gcgtcaaaaa acccccagta agcggcgcta ctggagccgc tacttttccc       900
     tcttcatact cttcgaccgg tcatcatatt ctccctctcc tgagccgcca acaacattcg       960
     gcgctggcag ttatggatac tgttgatgtc acttcctacg ttattctgct cccgcaatgc      1020
     actatttgct ccaacaacag cagctgatcc caaggtgggc tgtttgcata ttatcttcgc      1080
     ttgtggacct ccagcaacaa caaatggttc gttatcgtct tattgtgagc ccctctctgt      1140
     ttatcttatc tttcttggat gggtggtcca ctgtgagact gaccactcgt gctcactttt      1200
     cggcgtctgg aggaaatgtt tgtttacatc atggtctgga gcgtagagca tcgctacgcg      1260
     tggatgctca aaactctatg agctctatat ctttagctgt acctgccact ggattcgttg      1320
     ggcgactgga cattcatatg tccaatctgg agattaatga aaatttatgt gtgtccacgt      1380
     tggctatctt ggaagctatg cgtttgggat atgtggcctc tagcatcagg accctgccag      1440
     tgccttcaca tataccacac tcccgcccaa ttccgtcagt ggattgcatg gatcgtgctg      1500
     ccttgggctc taataagagc ttaagagttt tcttccaaaa tatatctgga atgcggacca      1560
     aatcccgcat ggtgctttta aactcttcag tctgtgactt tgatgtaatc gtcctcgttg      1620
     aaacatggct caatagcaac tttagttcct ccgagttctt tgaacccaaa atgtttcaag      1680
     tatttagaaa agaccgtgat tcatccagca cccattgtga gcgaggaggt ggtgtgatta      1740
     ttgctatccg ccgatccatg ttggccacgg tggttagcct taaggttggc gaccctatac      1800
     tggaccagct agccgtctca atccagggca ttcagggccc tttcatcatc attgcatcgt      1860
     atatcccgcc aaacagcgca ttcagtactt atcaagcgca tatggaaaat atcgccagtg      1920
     tctatggtag catggaggac cctatggctc tgatggttgc tggcgacttc aacttgagct      1980
     ctattgtttg gacttgggac ccggagtccg ttggcatgtt acccagcaat gttcaccaat      2040
     cgcatgaaat cgttgttttg gatgatattt ttagcatggg cctctcccaa gtaaataata      2100
     tttataacga tttatcgaaa attctggatc tgatattttt aaataatgta gttcatagta      2160
     aagtagaaat ttgtaatgta ccattaagtc cgtgtgatat gcaccataag ccattgttga      2220
     tacacatcga attttatagt tttctgcctt ccccctcacc tatttcttat tatcacttta      2280
     atgagtctaa cctttcactt attaataacg ctattgtaag ttttgattgg gtttcccttt      2340
     tttcggatgg cacgattgat gattgttata ccaagtttct gattgctctt ttcaatatta      2400
     tcgacaataa tgcctccgtt agggttcgaa ggtcgttcaa gctgccttgg tatactgagg      2460
     gtctaaaaaa cttaaagaat agaagggata aattttataa gcgatttcta aagacagggg      2520
     aactaatggc tggtgagttg taccggcaat ataagcggga gtttgaattc cttaataaat      2580
     ttctatacaa ccaatatatt actgatgttg aagcgagcct catatccaac cctaaagcgt      2640
     tttggcggtt tgtgaatggg aaaaaatcat cctctgatat accttctgcc atgtcttatg      2700
     gtggtttggc agctaactcc gataagggca tttctgagct ttttgcgaaa tattttgcct      2760
     caaaccttga gccgaaggtc tcttgggatg agcgggaggt acttcaaaaa attttgcctc      2820
     ttcttgaggt tggatgcttg gacattctag attgtgacat tgttgaggcc tctagtcatt      2880
     ttaatgagtc gcatacacct gatttagatg gtatctcccc attcttcatt aggaagtgta      2940
     ttgcatcctt aaccacacct ctgcaacttc tgttcacttt atcattatct tcgggtaagt      3000
     ttgcttctcg atggaaaata acctcgatct cgcccattca taaaggtggc agcagggcag      3060
     acgtcactaa ctataggcct atcgccaaga tatgtaatat tgccaagtta cttgagcgta      3120
     ttgtcaccaa aaagctaact tttttgattc gtaactttat ttctcacaat caacatggat      3180
     tcctgcctgg gcgatccacc acaaccaact tagtggtttt ctctaagcat tgcctggaag      3240
     cctttgaacg ccgatgtcag gtcgatgccg tttatacgga cttctctaaa gcctttgata      3300
     aagtttgcca tgcagcccta cttgctaaat tgttcagatt aggtgttcac tcctccatgt      3360
     taagttggtt ggagtcttat ttggcagacc gaccatgcca cgttcccatt ggtgatgcca      3420
     cctcgagtcc ctttattgcc tcatctggcc tcccgcaagg tagttctttg gggccgctcc      3480
     tattcatcat tttcatcaac gacatctcct cttgctttct ttattcggac tttttgttat      3540
     acgcggatga ccttaaagtg tttaaggcca ttagctgcat tagggatagc tatctactgc      3600
     aggatgattt gcgccgagtc tcttcttggt gcgccctcaa tctccttcct ctaaatttag      3660
     ctaaatgtca tttcattcgt tacagtaaga gggcgctaga cttatgtacc tcctatgcaa      3720
     ttggcaacca tgacctgcag ctcaaggagg aggtggttga tcttggcgtc cttttcgact      3780
     caaattttaa attttccagc catttagact ttataatgcc taaggcgtat gccatgttgg      3840
     gttttgtgaa gcggcacaca gaccaattca agagcccgta cgcgaagctt agtgtttacg      3900
     ccgcattcgt ccggtcgagg ctggaatatg cctctattat ttggagcccc gcaaataaaa      3960
     taagttcaaa tagagttgag cggttgcaga aaaaattttt aaaatttgca cttctccctt      4020
     taaggtttgt ggatcctcta ccctcatacc acagccggtg ccttctcctc cacatatgta      4080
     cacttgagga tcggcgcact gtggcagctt taactttcat taataacata gtaattagca      4140
     gcattgattg ccccatgtta ttggagctta taaacttcaa tgtgccccag agggatcttc      4200
     gctcgtttgc tccctttcgg attgcttgtc gtagggccaa ttaccttttg aacgagccta      4260
     ttgatagagc attatcattt tttaatactt tgccgcctag cctccgaact aagtggggct      4320
     cagataaaca agcgtttagg gtcttattgg ttaggcattt cttaagtagt atgtaagata      4380
     gattgtatag tagccatgta agattaaaat aatcaatggc gaaagagaga aataaataaa      4440
     taaataaata aa                                                          4452
//
ID   CR1-1_DAzt  repbase;    DNA;    INV; 4582 BP.
XX
AC   .
XX
DT   07-OCT-2019 (Rel. 25.03, Created)
DT   07-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4582
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 871-871 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..1504
FT                 /product="CR1-1_DAzt_1p"
FT                 /note="PHD finger."
FT                 /translation="MEFSVVCDKKTCKKQITHDQPSIPCWLCDSVVHAKCA
FT                 GLSGLVGDAISKRNGLHFSCEACRPVEREMAAFMRQTRKGFMELTVGFKEQ
FT                 YDRLLAMESQFSGFKLLTESPRRKKVTPRDLHVPAAPRPSDADKLTPTTPI
FT                 VQQLISFATPKATTAAGDENSVAEFIASEGMQPKSSVASASVLSASSLTVP
FT                 SIPTPPVNIRPGPPGITITGDRPVVPRLVGIPPKRQVFVSRLAPDSTIKDV
FT                 TAYIQSQIKAVDVKVEKFNFSYAREIASFKISVSQAHFNTICSAKFWPEHL
FT                 VVKEFKAKKKTRPPITLPTNQTSAPSSSSRSTSTRPKN"
FT   CDS           1426..4335
FT                 /product="CR1-1_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="APDNFANKSDQCSIVIFPLHFHPSKKLANSLLVTYQN
FT                 VRGLRSKLSILFQDSVAFVSHVIVFTETWLKPDILSSEVLADRYTTYRKDR
FT                 SSRRAGGVLIAVDSNFTSELFTVQIEQELEFLCVRLILPAFSVFITCSYIP
FT                 PSSEIAIYEQHLSALTAISSSLSDKDHMIVLGDFNLPGIDWSSANESNSLV
FT                 PMARHDFVDGLIDLSLSQVNHVKNSLGRFLDLCFATDPTLALLTRVPPLSI
FT                 PEDAYHPTFEVTLDLGRTVLNRSGRLPQCVRCFRKAEFTKLNNLIRDFDWS
FT                 ALYLCSDITTGTNIFYDALDSLFVSCVPLSCPIRSGKPPWFTKELSHLKNV
FT                 KSRLYKKFQEVGSPSSLSHYVIARSNFSVLNAQCYQNYLSRCRISFSKDPK
FT                 QFYGFVNTKRRTSAHPSSLSFLNTSADNDQAIADLFARFFQTTYSQDVYSG
FT                 QPYPYGLPRSNGIFSPLLNESSLLHDLRTVKPVFSPGPDGVPGCVLRYCAE
FT                 SLCGPLLKLFNLSINSSCFPPIWKESFIIPLHKKGSKSDANNYRGISKLSA
FT                 IPKVFEKILTPHLQHLCRSLISPAQHGFIRRRSTTTNLLEFTSFIIKGFQG
FT                 NLQTDVVYTDFSKAFDSVNHSLLAQKLDLLGFPPNLLRWIASYLCSRSQRV
FT                 LFKNSLSSPVLVTSGVPQGSHLGPLLFTLFINDLPSVLTYSRVLMYADDVK
FT                 LCVQYKDISFQSRLQSDLDRFQSWCCANLLNLNASKCKVMTFHRSSAFLVP
FT                 YTLCGGSLERITRVDDLGVLLDPKLKFSEHISTMVNKAMGVLGFIKRWSKE
FT                 FDDPYITKTLYTSLVRPILEYGSCVWCPQYNVHQDRIESVQKNFLLFALRG
FT                 LNWDAGVRLPSYPNRLLLINLPTLANRRKMLGVIFVHNLIRGDVDSPDLLS
FT                 RINFTIPIRSTRNYTPLFLPLCRSNYALHEPFRVLCSDYNSLYHIISTTNS
FT                 LPSLKLLILLYLSRN"
XX
SQ   Sequence 4582 BP; 1135 A; 1111 C; 932 G; 1404 T; 0 other;
     gtcgttcgtt tctctttgta gaatacagac gtgtttttgt tttgcgctcc gcgtactttc        60
     tgcctttttg cttaaacaac cggtgttttt attgaaaata acctttaaaa attcataaat       120
     taacaaccca ctaaatcatc tatcacttta tcgcgagtgc atgcctgtta acgtgaaaaa       180
     cataacttaa attatttgct tttgcatcgt ctaacagtgt gtttttgttt gtgcttttcg       240
     taagtacaca cattatcata tttagccgct ctcacctatt agttttgctg atctatcact       300
     ctctctctat tacccacact ttaaataact gttcttcctc tctcgctctc agtattttct       360
     gtgcagtagc gctctctctc tctcaattgt agctactgta actgctctca tttttaccta       420
     ttcctctttt ggcgtttatc tggcacattg gtctgaaacc aatttttttt taaggaaaaa       480
     aaaataaaat acaaattaca aaaataaaat taaaatggaa ttctctgtgg tctgcgataa       540
     aaaaacttgc aagaagcaga tcacccatga ccagccgagt atcccctgct ggctctgtga       600
     tagcgtagtg cacgctaaat gcgccgggtt atccggtctc gtgggtgatg ccatctcaaa       660
     aaggaatggc ctgcatttca gctgtgaggc atgccgtccg gttgagaggg agatggcagc       720
     gtttatgcgg cagacccgga agggctttat ggagctgacc gtgggcttta aagagcaata       780
     tgatcggctc ctagccatgg agtctcagtt tagtggtttc aaactactga ctgagtctcc       840
     taggcgtaaa aaggtcactc cgagggatct gcatgtgccg gctgcccctc gaccgtccga       900
     tgctgacaag ttgactccga ccactccaat agtgcagcag ttgatctcgt tcgccactcc       960
     gaaggcaacg acagctgctg gcgatgaaaa ttcggtagcc gaatttatcg cgtcggaggg      1020
     catgcagcca aaatcatccg tagcgtccgc gtccgtactg tccgcaagct cattgactgt      1080
     cccctcaatt ccgaccccac cagtgaacat acgtcccgga ccaccgggta ttaccatcac      1140
     aggtgatagg cctgtggtgc caagattggt ggggatccca ccaaagagac aagtttttgt      1200
     ctcacggctt gcccctgact ccacaattaa agatgtgacg gcttacattc aaagccaaat      1260
     aaaagccgtc gatgttaagg tggaaaagtt taacttttcg tatgccaggg agatagcttc      1320
     ctttaaaata agtgtctctc aagctcattt taacaccatc tgttctgcca aattttggcc      1380
     ggagcatttg gtggtgaagg agtttaaggc aaagaagaag actaggcccc cgataacttt      1440
     gccaacaaat cagaccagtg ctccatcgtc atcttcccgc tccacttcca cccgtccaaa      1500
     aaactagcaa actctctttt agtgacctat cagaatgttc gaggtttgcg tagcaagctc      1560
     agcattcttt tccaggatag tgtcgcattt gtatcccacg ttattgtgtt taccgaaacc      1620
     tggttaaagc cggacattct tagttccgaa gttttggcag atcggtacac aacttataga      1680
     aaggatcgtt cgtctcgacg tgcaggaggg gttctgattg ctgtggactc aaacttcacg      1740
     tcggaacttt tcacagtcca gatcgagcag gaactggaat ttctgtgtgt aagactgatt      1800
     cttcccgctt tctcagtttt cataacttgc tcgtatattc caccttcttc ggaaatcgca      1860
     atttacgagc agcatttgtc cgccttaacc gctatttctt cctcgctatc tgacaaagat      1920
     cacatgatag ttcttggtga cttcaacctg ccaggaattg attggtcttc ggcaaatgag      1980
     tctaatagcc tggtacccat ggcacgacat gactttgttg acggcttgat tgacctgtct      2040
     ctgtctcaag ttaaccatgt taaaaattcc ttgggtcgat ttcttgatct gtgctttgca      2100
     acggatccga ccttagcgtt gttaactcga gtccccccgc tcagtatacc tgaagatgcc      2160
     taccatccta cattcgaagt gacgctcgac ctaggacgaa ctgtattgaa tcggtcgggt      2220
     agactacccc aatgtgtccg ctgcttccgt aaggccgagt ttacgaagct taataacctc      2280
     attagggatt ttgattggtc cgctttatat ttgtgcagtg acattacgac aggcacaaac      2340
     attttttatg atgcactgga ctcacttttt gtctcttgtg tcccactttc gtgtccgatt      2400
     agatcaggaa aacccccttg gtttaccaag gagttatccc atctaaaaaa cgtaaaatcc      2460
     agactgtata aaaaatttca agaagttggc tctccttctt ctctttctca ctatgtaata      2520
     gctcggtcaa atttttcagt tcttaacgct caatgctatc agaactacct atctcgatgc      2580
     aggataagtt tctctaagga ccccaaacag ttctacggct tcgtaaacac taagcgtaga      2640
     acgtccgcac acccatcctc gctatcattc cttaatacgt cggcagataa tgatcaggca      2700
     attgccgatc tttttgcccg tttcttccaa actacctatt cgcaggacgt ctactctggt      2760
     cagccgtatc catacggctt accgaggtcg aacggcattt tcagtccttt gctaaatgaa      2820
     agctcgttgc ttcatgatct acgaacagta aagccggtgt tctcaccggg tccggacgga      2880
     gttcccggct gtgtactcag gtactgtgcc gagtctctgt gtgggccgtt gcttaaactg      2940
     ttcaacctct ctataaattc ttcatgcttt cccccgatat ggaaggagtc ctttataatt      3000
     cctctccata agaaaggtag caaatctgac gcgaacaact atagaggtat atctaagtta      3060
     tccgctattc ctaaagtgtt tgagaaaatt ttaactccgc acctgcagca cctatgcaga      3120
     tcacttatat ctccggctca acatggattt ataaggcgga gatcaaccac tacaaactta      3180
     ttggagttca cctcctttat aattaaaggc tttcaaggaa atttacagac ggatgttgtt      3240
     tacaccgatt tcagtaaagc gttcgactct gtaaaccact ccctccttgc acaaaaactt      3300
     gaccttttag ggttcccgcc caatctcctt aggtggatcg ctagttacct gtgttctagg      3360
     tctcaaagag tccttttcaa aaactccctg tcctcaccag ttttggtgac ttcgggtgta      3420
     cctcagggga gccatctagg ccccttactc tttacactct ttataaatga cctgccttct      3480
     gtattaacat actctcgagt acttatgtat gcggatgatg ttaagctctg tgtccagtat      3540
     aaggacattt ccttccaatc caggttgcag tccgatctcg atagatttca gtcttggtgt      3600
     tgtgcaaatc tgttaaacct taatgcttca aaatgtaaag taatgacttt tcatcgttcc      3660
     agcgcctttc tggttcctta caccctttgt ggtggttctc ttgagagaat tacccgggtt      3720
     gatgatcttg gtgttctatt agatcccaag ttaaagtttt cagaacacat ttctaccatg      3780
     gtgaacaagg ccatgggcgt gcttgggttt ataaagaggt ggtcaaagga atttgatgac      3840
     ccctatataa caaagactct ctacacctct ctggttcgtc cgattttaga atacggttct      3900
     tgtgtatggt gccctcagta caacgtacac caggaccgta tagaatcagt tcagaaaaac      3960
     tttttacttt ttgctttacg cggcctcaac tgggatgcag gtgtgagact gccgtcttac      4020
     cctaatagat tgcttttaat aaaccttcca accttagcta atcgtaggaa aatgcttggt      4080
     gtgatttttg tgcacaactt gatcaggggt gacgtagaca gccctgacct gttgagccgc      4140
     ataaacttca cgattcctat tagaagcact aggaattata cacccttgtt tcttccgctt      4200
     tgtagatcga attacgcctt gcatgaacca tttagagtcc tatgctctga ttataattcc      4260
     ctctaccata ttatctctac tactaactcc cttcctagtc tgaaattatt gatactctta      4320
     tatctttctc gtaattagca attgcttagt ttttagctaa attagttcta cttttcctcg      4380
     aacactagtc taacagctat ctttcctgca tgtccgcgat cggttcggtt aacgagtcgc      4440
     gcgttatgcg gcagcgcccc tcggtcggtt gggcgggagg tgggctgcgt tattgcctgg      4500
     gatccgcgcg taacagccat cggctggtgt cgcttgggcc acttgatggt gcagtcattg      4560
     catatcaacg tcctaaagaa aa                                               4582
//
ID   CR1-1_DBi   repbase;    DNA;    INV; 2937 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2937
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 921-921 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2937 BP; 820 A; 607 C; 520 G; 989 T; 1 other;
     gaaacaaatt tttgtttctc ggctgagtcc tgacctttca tccctggaca ttacggccta        60
     tatccgtaac aaagttcaga tggatgatct aaaggttgaa caatttaatt ttccatatgc       120
     cagggaagta tcatcattta agatcggtgt tccctgtgct cattttgcaa ckatgtgctc       180
     agccaatttt tggcctgcag gcatttttgt taaagagtac gaagctaaaa aaagaaaatt       240
     cgttcaaagg aagttggaaa tcccaagcca tccacgtctt catctttatc tgtctcaaaa       300
     aactatattc tttccttctg ctttcctatc agaatacaag aggtttacaa agtaagttga       360
     ccaaattgta tactgatagt ttttccttgt cttcccatgt tattgtgttt acagaaacct       420
     ggaaattctt agttccgaag tctttccaag taagttcaca acttacaggc ttgatcgtcc       480
     ctcccgacgt ggaggtggag ttttaattgg agttgactca gaattaacgt ctgaagtaat       540
     aacgtccgac attaaatttc tgtgtgtaaa actatccctt ccgggtattt ctatatacat       600
     aacatgttcc tatattccgc cgtcatctga attcccaata tatgcgaatc atctgtccgc       660
     tatccatata tctcaagtaa actttcagtt aatagtttta ggtgacttta atataccggg       720
     ctatattgtt accttcaacg cagcatgatt ttcttgacgg cttcttaata tttcttgtct       780
     caagtaaatc atgttcaatt tttaggacga ttactggatc tatgctttgt ttccagtcca       840
     gattgtgttt gcatagttag aacctctgca attactttac cagaagaccc atatcaccca       900
     acgctggagc tgactattga cacgggtaca aaagtgcatg aactatcgaa aagtcagcta       960
     aacgcatccc ctgctttcgt agagcaagct ttgcacttat caatagcctt atagcttgct      1020
     cggattggtc taatctgtac ttatgtacta acgtggttta ataaagagtt ggcacgacta      1080
     aaatgtaaag tctagactct acaaaaagtt tagagcttcc ggtttgcaag ctgcttttcc      1140
     cgatacttaa gtgctcggtc tgattttacc gtgcttaacg cccagtgtta caaaaactat      1200
     ttagctcgtt gcaagacaca gtttacactg gatccaaaaa gttttataat tttgttaaca      1260
     caaagcgtaa atcttcaagt tttccatcac acttaaattt gaaattcgcc gcaaacactg      1320
     atcagccata gccgatcttt ttgcacagtt ttttcaaacc acctattcaa catcaagtcc      1380
     tccatatgac atgctaaatg catttgcaaa gggtcaaacc agtctactct ccgggtcctg      1440
     acggagtccc tggatgtgtg ctcagtattg cgctgagact ttgtgtagac cattgcacaa      1500
     actttttact ttgtctttag aaacgtcaga tttccccaca gatggaagga gtcgttcgtt      1560
     atcccgcttc ataaaaaggg gagtaaattg aacgcatgta attacagagg tatttcaaag      1620
     ctttcagcta taccgaagct ctttgagaac attattacgc cccatttgca gcacagttgt      1680
     aggtccctta tctcctcttg tcaacacgga tttataaaac gtagatcaac gacaaccaac      1740
     cttttggagt ttacttcatt tgtgtaagtg gttttagaaa aaatcgtcag actgatgtag      1800
     tttacactga tttcagtaag gcgtttgatt ctgtaaatca cccgattcta gtccggaaat      1860
     tggacctttt agggtttcca ggtgatcttc ttaggtggat cttaagttat ttgaatggca      1920
     ggactcaaag ggttattttt aaaaactctt tttcatccct aatccgagtt acgtccggtg      1980
     taccacaagg aagtcatctt ggcccgctcc tgtttacatt atttataaat gaccttcctc      2040
     acgtaagttg tgcctgcaat gtaatgatcc cgcacaagtt tagctttaaa tctgatctca      2100
     tgcatttcaa acatggtgca tggataatga attaaattta aatggttcta agtgtaaact      2160
     aatgaccttt tttcgtgtca gccctcacta ttcaacttat actttgagtg gttgtggtta      2220
     gataggataa cgcatgctga cgaccttgga gtctatatgg atcctaaact taaattttct      2280
     gatcacatta ctaccatggt gaataaagcc aggggcgtgc ttgcatttat caaaaggtgg      2340
     tcgaaggaat tcgatgatcc ctatgtcaca agaccttgtt tatttcatta gtccgaccaa      2400
     ttcttgagta ctgcgctccg tttggagtcc ccaatatggg gtgcatatag accggattga      2460
     gtctgtgcaa aaaaacttct taatatttgc cttacgggga cttaactgga tacaagccta      2520
     tactaccatc ctactctagt agactacttc ttattaactt accatcatta gctaaccgta      2580
     gaactatgct tggtattacg tttattagaa atcttattca tggtgatgtg gagagtcccg      2640
     agttactggg tcgcctgcat tttaatgtgc caaatagatt cactagaaac tatattcctc      2700
     tagtattaaa tcattgtatc tcaattatgc aatgcatgaa ccttttagag tactttgcaa      2760
     tgattataat agactatatc acctaatatc tactaccgac tcactgccta tccttaaatc      2820
     aataatacta tccacttagc aactaattag ttttacttta tgtatcttgt ctatgcgtat      2880
     tttgacccgt atttttaatt gtctattgtt atattgtctt tttttccgcg atttcgt         2937
//
ID   CR1-1_DBp   repbase;    DNA;    INV; 4456 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4456
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 698-698 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..880
FT                 /product="CR1-1_DBp_1p"
FT                 /translation="MSPLVCTECSAEVTATQLRGCEAVRCASICRRAYHTA
FT                 CVDLPSEAIKLLINIPNLMWQCDSCVIGNDSHSKIDELNHKVLDLESRFES
FT                 LNAKVDLALVNGAAVPAGRASSAGVHVVAPPAMPTSTGSIKATLGQAPTAS
FT                 KGAVPKKKRINPNRRIVGQAPSCAQLQVLPTLKYLHVGKFATSTQPDALCK
FT                 FVADKLNVEPNDLVCARLIKKDADINALKFVNFKLGVPEQNFPTVFNDDFW
FT                 PMSVKVSRFVHREPAKVIDLPAILPLPHSQSSKNPQ"
FT   CDS           985..4365
FT                 /product="CR1-1_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVTVDAVFNSSNNWLRLLIDILQQQQLFSRRVVYFLS
FT                 SLVDAQQQQDDGNRDVGSASLILSLFAGPLAGAFFSPMEDVYLRFGPVGGS
FT                 LLRLDVPDYERSMFSPGTESALLLDSRRSTDESNGNFYVSLSAILQAMRIG
FT                 YASTCTSTRSALSPSPPCRPIPSLDCSYSSSSDPNKSLKVLFQNISGMRTK
FT                 TRMVFLNSSACDFDVIILVETWLNDKFSSSEFFEPNLYHVFRKDRDAFSTQ
FT                 CERGGGVIIAIRRSLQATPLRLPVADPLLDQLAVSIQGVHGPFVIIASYIP
FT                 PNSAFSIYHAHMENITSVCARTSDPTALMVAGDFNLSSIVWSWDPESPCML
FT                 PSNVHQSHEIVVLDDIFSLGLSQVNNIFNDLSKILDLIFLNNLVNSKVELC
FT                 NVPLSPCDMHHKPLVINIEFYSFLPSASPIPYYHLNDTNLSLINASISAFD
FT                 WVSLFSDGSIDDCYTKFLVALFNIIDTYAPVRVRRSYRLPWYTKGLKNLKN
FT                 RRDKHYKRFIMTGETRAGELYRQFKREFDFLNKFLYNQYISDVEASLRSNP
FT                 KAFWRFVNSKKSKSDIPSSICYGNLAADSDQGVSDLFAKYFASNLEPKVPW
FT                 SDHETLLSIEPFLNVSNMDVLDGDLVEATGHLTESLTPDVDGISPFFLKRS
FT                 IASLSTPLQLLFSFSLSSGRFPHRWKITSITPIHKGGSRCDVTNYRPIAKI
FT                 CNVAKILERIVTKKLTFLARNFISPNQHGFLPGRSTTTNLAVFSKHCFEAF
FT                 ENRFQVDAIYTDFSKAFDKVCHAALLAKLYKLGIHSCLLSWFESYLADRPC
FT                 HVTVGDAISSPFVTSSGLPQGSSLGPLLFIIFINDISSCFRHSHFLMYADD
FT                 LKIYKEISCISDSYLLQEDISRVYSWCSRNLLPLNLSKCMFTRYSRRSLEI
FT                 CTGYSINNYNLAAKEEVLDLGVLFDSKFKFSGHLDYILPKAYAMLGFVKRH
FT                 VNQFKSPYSSLSVYAAFIRSRLEYASIIWNPECKVRSNRIERLQKKFLKFA
FT                 LLPLRFQDPVPSYQSRCLLLNVCTLEDRRKLAALTFLNNLIVDNIDCPFLL
FT                 GLVNFNVPQRDLRTFAPFRVKCHRANYLLNEPIERALSYFNSLPPSLRIEW
FT                 GSDKGVLKRKLIRHLLSFC"
XX
SQ   Sequence 4456 BP; 1075 A; 1028 C; 938 G; 1413 T; 2 other;
     tcagtcttca tctagctttc tttgagttcg gacgtctact ttttcgctca tgtcgcctct        60
     cgtttgcacc gagtgcagtg cagaagttac tgctacccaa cttcgtgggt gtgaggccgt       120
     tcggtgcgcg tcgatctgcc ggcgtgccta tcacaccgct tgtgttgatt tgccctcgga       180
     ggctataaaa ctacttatta acattccgaa cttaatgtgg caatgtgata gctgcgtcat       240
     tggaaatgat tcgcattcca aaattgatga gctaaatcat aaagttctag atctggagtc       300
     ccgcttcgaa agccttaatg ccaaagttga cctwgccctg gtaaatggag cggctgtgcc       360
     cgctggacgc gcctcctcgg ctggggtgca tgttgttgct ccccctgcta tgcccaccag       420
     cactgggagc ataaaggcta ctctggggca ggccccaacg gcatctaagg gggctgtccc       480
     gaagaagaag cggatcaacc ctaataggcg cattgtggga caagcaccca gttgcgctca       540
     acttcaagtg cttcccacct tgaaatacct tcatgtgggt aaattcgcga cgtctaccca       600
     accggatgca ctgtgcaaat ttgtcgcaga taagctgaac gtggagccca atgatttagt       660
     ctgtgctagg ctgatcaaaa aggatgctga catcaacgcc ctcaagttcg tcaattttaa       720
     attgggagtt ccggagcaaa atttcccaac agtcttcaat gacgattttt ggcctatgtc       780
     ggtaaaagtc agccggtttg ttcatagaga gccggctaag gttattgacc tcccggcgat       840
     tctaccttta ccgcattcgc aatcttcaaa aaacccccag taagcggcgc cgctggcgcc       900
     gttacatcgt tttcttctca agctgcagtt cgtcaccccg attgctctct gctgcgctac       960
     caacaacaat cggcgtgggc gttcatggta acggttgacg ctgtcttcaa ttcctccaat      1020
     aattggcttc gtttgctgat cgatattctt caacaacaac aacttttttc aaggcgagtt      1080
     gtttatttct tatcttcact tgtggatgcc cagcaacaac aagacgatgg taatcgagac      1140
     gttggcagcg catcgcttat cttatctctt ttcgctgggc cactcgctgg tgctttcttt      1200
     tcgccgatgg aagatgttta tttacgtttt ggacccgtgg gtggatcttt gctgcgtttg      1260
     gatgtgcctg actatgaacg ctcaatgttt tcacctggca cggaatctgc cttgctactg      1320
     gactctcgca ggtctactga tgagtctaat ggaaatttct atgtgtcctt gtcggctatt      1380
     ttgcaagcta tgcgtattgg atatgcctcc acatgcacca gtaccaggag tgcactttca      1440
     ccatcaccgc cttgccgtcc aattcccagt ttggactgta gctactcgtc gtcctcggac      1500
     cctaataaaa gcctaaaagt tctattccaa aatatatcgg gaatgagaac caagacccgg      1560
     atggtattcc tcaattcttc tgcctgcgat tttgatgtaa tcatccttgt ggaaacstgg      1620
     ctcaatgaca aattcagctc ctctgagttc ttcgagccta atttgtacca tgtatttcga      1680
     aaggaccgag atgcattcag tacccagtgt gagcgaggtg gaggtgtgat catcgctatc      1740
     cgtcgatctc ttcaggctac accactgcgc cttccggtgg ccgacccttt actggatcag      1800
     cttgcggtct caatccaggg cgtccatggc ccgttcgtca tcattgcatc atacatccct      1860
     ccgaacagcg catttagtat atatcatgcg catatggaaa acatcactag tgtctgtgct      1920
     agaacgtcgg accctaccgc tttgatggta gctggcgatt tcaacctgag ctccattgtc      1980
     tggtcttggg acccggaatc tccctgcatg ctacctagca acgttcacca gagtcatgaa      2040
     attgtagttt tagatgatat ttttagtctg ggcctctccc aagtaaataa tatttttaat      2100
     gatttatcca aaattcttga tcttatattt ttaaataatt tggttaatag taaagtagaa      2160
     ttatgcaatg taccattaag tccttgtgat atgcaccaca agccgttggt aattaatatt      2220
     gagttttata gttttttgcc ttctgcttcc cccattccat attatcatct gaatgatact      2280
     aacttgtcac ttattaacgc ctctatttca gcctttgatt gggtttccct tttttcggat      2340
     ggctcaatcg atgattgtta tactaagttc ttggttgccc tttttaatat tattgatact      2400
     tatgcccctg tgagggtacg aagatcctat aggcttccct ggtatacaaa aggtttaaaa      2460
     aacttaaaga atagaaggga taagcactac aaacgattta taatgacagg tgagactcga      2520
     gcaggagagc tgtaccggca atttaagcgg gaatttgatt tccttaataa gttcctctac      2580
     aatcagtata tatccgatgt cgaagctagc cttcgatcca atcctaaagc tttttggcgg      2640
     tttgttaaca gcaaaaagtc aaaatcggac ataccttcat ccatatgtta tggtaattta      2700
     gcagccgact cggatcaggg cgtttctgat ctttttgcaa aatactttgc ctctaacttg      2760
     gagccgaagg ttccttggag tgatcatgaa actcttctta gcattgagcc ttttcttaat      2820
     gtgagtaaca tggacgtttt ggacggtgac ctagttgaag ccactggaca tctgaccgag      2880
     tcgctcacac ctgacgtgga cggtatctcc ccattctttc ttaagaggag tatcgcttct      2940
     ctttctactc cccttcaact gctgttctcc ttttcgctct cttctggtag attcccccac      3000
     cggtggaaga ttacttctat aacgcctatt cacaaaggtg gcagtaggtg tgatgttacc      3060
     aactatcgac ctatagccaa aatttgcaac gtcgctaaga tactggagcg gatagtaact      3120
     aaaaaattga cttttctggc tcgcaatttc atatccccca accagcatgg ttttctgcct      3180
     gggaggtcca ctaccactaa tttagctgtc ttttctaagc actgctttga agcttttgaa      3240
     aaccgatttc aggttgatgc catttacacc gacttctcca aagccttcga caaagtgtgt      3300
     catgctgccc ttctggccaa attatataaa ttaggtattc attcctgcct attaagttgg      3360
     ttcgagtctt atctggctga ccgaccttgc cacgttactg ttggagacgc tatctcaagt      3420
     ccatttgtca cctcctctgg tcttccacaa ggcagctctc ttggacctct tctatttatc      3480
     attttcatta atgacatctc gtcatgcttt cgtcattcgc actttttaat gtatgcggat      3540
     gaccttaaaa tctataaaga gattagctgc attagtgaca gttacttgtt acaggaggat      3600
     atatccagag tttactcatg gtgctcccgc aatcttcttc cattaaactt atctaagtgt      3660
     atgtttaccc gttacagtag gcggtctctt gaaatctgta cgggttattc catcaataat      3720
     tataatttgg cagctaaaga agaggtgtta gaccttggtg tcttattcga cagcaaattt      3780
     aaattttctg gtcacttaga ctatatttta cctaaagcgt atgctatgct gggctttgtt      3840
     aagaggcacg tgaaccagtt caaaagtcca tactcgagcc tcagcgtcta tgctgcattc      3900
     attcggtcga ggctggaata tgcctcaatc atttggaatc cggagtgtaa agttcgttcc      3960
     aacagaattg agcgactcca gaaaaaattt ttaaaatttg cacttctgcc tctaaggttt      4020
     caggatcctg ttccttcata ccagagccgt tgccttcttc tgaacgtttg cacgttggag      4080
     gatcggcgta aactggcagc gttaactttt ttgaataatt taatcgttga taacattgat      4140
     tgtccttttt tgttgggact cgttaatttt aatgttcctc aaagggatct tcgtaccttt      4200
     gccccctttc gggtcaagtg tcatagggcc aattatcttt taaatgagcc gatagagcgg      4260
     gctctttctt attttaattc tttgccgcct agcctccgaa ttgagtgggg ctctgataag      4320
     ggtgtgttaa aacgcaagtt aataaggcat ttattaagtt tttgttaatt ttgtagtttt      4380
     atttattagg tgtaagttgt tatgttatgt agccatgtaa ggatttgtcc gttggcgaaa      4440
     taaataaata aataaa                                                      4456
//
ID   CR1-1_DEl   repbase;    DNA;    INV; 4690 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4690
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 567-567 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           982..4056
FT                 /product="CR1-1_DEl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MHKLVLRPLALYIVLSNQGAQPQLFSHQQQYGALFGV
FT                 SLSHHHAASYAQSLLTAVFSDVPNAYDSSALLILALYPSPAASLLRFTRGW
FT                 LSDCVELSLSSHPYLQQQRNRMTLPFSLCSSLLEKSPLLYSALFRVALPSP
FT                 PAASALRPTFGWLTGVFGVPLTSSWLPTGDFKILHFYGRLLSPQVSLLLPL
FT                 FDDALSALRSQGHSSTLEVSASWSSTIGRMDCNYNLRNDNLPLPIRIRTGI
FT                 LRTALNGFFGLARQRPHVDFTIPFHDFRYETMATVSENSSVKRIGTNCLKI
FT                 YFQNISGMRTKTQSVFMSTSNSGYDIIILVETWLNPNFNSNEFFDTNLFHV
FT                 YRKDRDFSRMKCERGGGVIVAVRRTFSCCAAVLSNEDSLLDQLAVEVSGLS
FT                 GKTVIVASYIPPGSDFTLYQAHMNNIASLHASIDDSVGLVVTGDFNLGSVV
FT                 WSCDPQSHAMVPGNVHQPHEIIVIDDCYSMGLTQINYIFNDLHRLLDLIFI
FT                 NSIVHSSVSLAEFSISSCDVHHKPLCFNIEFYNFLPVVNFIPMYNFDHASS
FT                 VAVSDCLTSMDWVSLLSNACIETNYNNFLVALKNILDSTCSTKVRGSYRLP
FT                 WYTKGLQKYKNLRNKFYKRFIRWGNPLDRDRYRQHKREFEFLNKFLYNQYI
FT                 SDIENSLKSNPNVFWRFINSKKSYSSIPSTVSYNNTTANSGTNIANLFASF
FT                 FSANFEPACGSLEINDEDISEAISQFDDSIKPDIDGVSSFFLKKFYHSLLQ
FT                 PLKMIFSSSLLQGKFISRWKIAKILPVHKGGSKSEVSNYRPIAKISNIAKL
FT                 FERIVVKKLSFLIRTYIDPNQHGFMPGRSTTSNLAIFAKHCIQAFELHSQV
FT                 DTVYTDFAKAFDKVSHSALQAKLFKLGIHGSFLNWISSYLANRSYHVEVSG
FT                 FVSNLFEATSGLPQGSSLGPLLFIIFINDICFCIQSAKYLLYADDLKIYMP
FT                 VNSLNDSYLLQSDLNKISLWCIQNNLPLNLNKCYVVRYSKCILNILSTYVI
FT                 DNHSLSALTETVNFCLLTI"
XX
SQ   Sequence 4690 BP; 1258 A; 1026 C; 880 G; 1522 T; 4 other;
     aatcagatct gatcagcttt cgttgcgagc agacgcgttt ttcatttcgt tatgacccca        60
     tttacgtgct ctgagtgcaa tgttgccgtt acgcatgcgc aacttcgcgg ttttgaggcg       120
     gttcgatgtt catcgctttg tcatcgcact ttccacactt cttgtgttaa tttgcctgaa       180
     gaggcaataa aattgctaac tattatgccg aatctgttaa tcgcactcga aaacagacga       240
     aatcattgaa gaacttcgcg aacttaaaag cctatacttg cacttaaata canagtttca       300
     aatcgctttt cccgaatctg cggatgcccc ggctaatgtt aacgccaaca agcggaagaa       360
     ggaaaaagtt gccaataaac ctccggcttc atctacttcc catcatacca atcccgttgt       420
     gtcagaccat aaccctccca atgagggctt tacggttgtc tccaagaaaa ataaaaagaa       480
     tcgtaacaac aagaagcata ttattggttc ggcgctcgct tgtgatcaac ttgcagtatt       540
     gcccagcaaa agatttttgc atattggcaa attcgctgta aacacaaagc cagaggcgct       600
     gtgcaagttt gtttctgaca agttaaaagt aaattctgac accatatcat gctattcatt       660
     aacaaaaaaa gatgtagatc tcagcacact gaagttcatt aactttaagc ttggagtccc       720
     ggagcagtat tatcagactg tcttcagcgg tgatttctgg ccacaatcag ttaaggtgag       780
     ccgattcatc cacagggaga gagagcactt ggagtctacc gtggtggaca cgttgggtgg       840
     ngaaccattg cgtacatcta cccctgccaa gcttcaatca aaaaaccccc agtaatcgac       900
     gtcactggct ctgacgtcat tattggttca ctttcgtgca tcatttataa ctgcagttct       960
     caacctcntc accaacaaca aatgcataag ctggtgctta ggccgctcgc cctctacatc      1020
     gttctttcga atcaaggcgc gcagccgcag ctgttttcgc atcaacaaca atacggcgct      1080
     ctcttcggag tttcgctctc tcatcatcat gcagcttcat acgctcagtc gctcttgacg      1140
     gctgtttttt ctgatgtacc caatgcatat gatagtagcg cgctcctcat attggcgctc      1200
     tatccatctc ctgctgcctc gctgcttcgc tttactcgtg gatggctgag cgattgcgtt      1260
     gaattatcac tctcttcgca cccatatttg caacaacaac gaaatcggat gactttgccc      1320
     ttttctttat gcagctcctt acttgaaaag agtccgcttc tatacagcgc tctcttccga      1380
     gttgcgctcc cttcacctcc cgctgcatcg gcgcttcggc cgacgtttgg atggcttacc      1440
     ggtgtttttg gagttccgct cacttcctca tggttgccaa cgggggattt taaaatctta      1500
     catttttacg gacgcttgct ctctccacaa gtttctcttc tgttgcctct ctttgatgat      1560
     gcgctttctg cattgcgctc ccaagggcac tcatcgactc tggaagtatc tgcaagttgg      1620
     tcttctacga ttggacgaat ggattgcaac tataaccttc gtaatgataa tcttccacta      1680
     ccaatacgta tccggactgg aatattgcgt acggctctga atggcttttt tggacttgcg      1740
     aggcaaaggc cgcatgtgga ttttacgata ccatttcatg acttccgtta tgaaactatg      1800
     gcaacagttt ctgagaattc atcagtcaaa agaattggaa ctaattgcct taaaatttat      1860
     tttcaaaaca tatctggaat gagaactaaa actcagtccg tcttcatgag cacttccaac      1920
     agtggttacg acataataat attggttgaa acctggctca accccaactt caactccaat      1980
     gagttcttcg atactaattt attccatgtc tatcgcaagg atagagactt cagcagaatg      2040
     aagtgcgaga gaggtggagg cgtcatcgtg gctgtccgcc gtaccttctc ctgctgcgca      2100
     gctgtacttt caaacgagga ctctcttctg gaccagttgg ctgttgaggt atctggattg      2160
     tctgggaaga ctgtaatagt tgcttcttat attccccctg gaagtgactt tacgctttat      2220
     caggcgcata tgaataacat tgccagccta catgccagca tagatgactc tgttggtctc      2280
     gttgtgacag gagattttaa tttgggatct gttgtatggt catgcgatcc gcaatcccat      2340
     gctatggtgc ctggcaatgt acaccagcca catgaaatta ttgttatcga tgattgttat      2400
     agtatgggcc tcacccagat aaattatatc tttaatgatt tgcataggct actagattta      2460
     atattcatca attctattgt tcattcctcg gtaagccttg ctgaatttag tatttctagt      2520
     tgtgatgttc atcataagcc cttatgcttt aatattgaat tttataattt cttaccagtt      2580
     gttaacttta ttcctatgta taattttgat catgccagct cggttgccgt aagtgattgc      2640
     ctcacgtcta tggattgggt ttccttgcta tcaaatgctt gcattgagac caattacaat      2700
     aactttcttg tcgctttaaa aaatattctt gacagcacnt gttcaaccaa ggtacggggt      2760
     tcctataggc ttccttggta tacaaaaggt ctccagaaat ataaaaatct aagaaataag      2820
     ttctacaaac ggttcattag atggggtaat ccattggatc gtgatagata tagacaacat      2880
     aagcgggaat ttgagtttct taataaattt ctatataatc aatacatttc cgacattgaa      2940
     aatagcttaa agtcaaatcc aaatgtgttc tggcgtttta ttaattcaaa gaaatcttac      3000
     tcttccatac cgtcaactgt gtcatataac aatactaccg ctaattctgg gacaaatatt      3060
     gcaaacttat ttgcttcctt tttttcggcc aattttgagc ctgcttgtgg ttcccttgaa      3120
     attaatgatg aggacatttc tgaagctatt tcgcaatttg acgactccat taagcctgac      3180
     attgatggag tttcttcatt ttttcttaaa aaattttatc acagtcttct tcaacccctt      3240
     aagatgatct tctcgtcttc gctacttcag ggtaaattta tttctagatg gaaaattgcc      3300
     aaaattctac cggttcataa aggcggaagc aagtctgagg tttctaatta caggccgatt      3360
     gctaaaataa gcaatattgc aaagctattc gagagaattg tagttaaaaa attatccttc      3420
     ctgatacgta cttatattga ccctaatcag cacgggttca tgcctggtcg ttctactacc      3480
     tcgaatttag ctattttcgc gaaacattgc atacaagcct ttgagttaca ttcccaagtg      3540
     gacacagttt atactgattt cgccaaggct tttgataagg tttctcactc tgccttgcaa      3600
     gcaaaacttt ttaagcttgg tattcacggc tcttttctaa attggatctc ttcttatttg      3660
     gcaaaccgat cctatcatgt tgaagtcagc gggtttgttt ctaacctctt tgaagcaacc      3720
     tctggtcttc ctcaaggcag ttctcttggt cctttgcttt tcattatttt cattaatgat      3780
     atttgtttct gcattcaatc tgccaagtat cttctttatg cggatgacct taaaatatac      3840
     atgccagtga attccttaaa tgacagttat ttgctacaat cggacttgaa caaaatcagt      3900
     ttatggtgta ttcagaacaa tttacctctc aacctaaata aatgttatgt tgttcgctat      3960
     agtaaatgta tcttaaatat tctttctaca tatgttatcg ataaccattc actctctgcg      4020
     cttactgaga cagtaaattt ttgtttatta accatatgaa ccatgttctg ccgaaggcat      4080
     atgcaatgtt cggatttgtc aaaagaaaca ctatactttt taaggacccg tactcacgac      4140
     tgacagtgtt ctcagcattt gtgcgttcaa gagtggaata tgcttccttt atttggaacc      4200
     cgtcaagtgt tgttcatatc aatagaattg agaggctgca gaaaaagtac ctaaaatttg      4260
     cacttcagcc gttaaacttt tcggaacctt tgccagctta ctctagccaa tgttgcctac      4320
     tgcatacctg cagtctagaa gatcgccgtt cgatagcgag cttgctcttt atcaatgatg      4380
     ttataattgg taatatagat agtccattca tattaagctc aattaaattc aatatccctg      4440
     ccaggagtct ccgtaccatc atcccatttt ttgaaagtgc tgcgaggact aactatgcgc      4500
     gtaatgagcc aatcttaaga actttaagac tttttaactc tttgccacta agtattcgat      4560
     tggtttgggg atccaagaag gatgtgctta ggcaattact tagggaatat tttttaatta      4620
     atacttagtt ttaagttaag ttagctgata gccagataag gatttatcca ttggcgaata      4680
     aataaataaa                                                             4690
//
ID   CR1-1_DEu   repbase;    DNA;    INV; 4497 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.06, Created)
DT   14-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4497
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(6), 918-918 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           524..4354
FT                 /product="CR1-1_DEu_1p"
FT                 /translation="MSDIICCIKKCNKIVSVDQVSVHCWLCDNIAHSKCAG
FT                 FKSATVPDALGRSDSGLHYCCDRCREAQKEIRSFMRQTKNGFGQVLVAFRK
FT                 ANDLFSALDTQFNNLQLLNESPKRKKTSRLPPAVTASNANNSLLPPSDVQQ
FT                 SPSLSPLPSTTPIVTTPVTAHISDPENVAKVRRHLSDEQSEVVALDPPVPX
FT                 VLQAQKNXPLTHQRNLGSGLPAPTGSVGKPPAPPKPLIGIPLEKHIFVSRL
FT                 SPDTSESDILAYIQAKLKVDIRVENITKYKYSYARNVASFKIRVPPMAFDD
FT                 ICSTNFWPQHIFVQEHQLKNKKRKKSPFRSKASTSKRSCQPKKLTSSIILX
FT                 YQNTRGLRSKLSNLFSVSFSFASQVIVFTETWLTPEILNSEVFPSRYTIYR
FT                 LDRSLGNGGGVLISVDSNLVSEVINLQTGDLEFITVKISLSRLNLYITCSY
FT                 IPPKSDSLTYERHLAAIQSVFSMLSDMDQLVVLGDFNLPQVAWSMNDNTLA
FT                 LTPTSHHDFTAGMLDMSLAQINHIGNSLGRLLDLCFLSDTDAVSIYRAPPL
FT                 TLPEDPYHPTLDLTIDTGLCTKPKNNYADKKIRCFRKADFKKINNFISEFD
FT                 WSDLYACTDMSTALDIFYSTLNLVFDRFVPLRYPAMADKPPWYTRHLSNLK
FT                 NIKLRFFKKYLRTNSNDCYVHYMVARSNFTVHNTQCYKNYLARCKNQFALD
FT                 PKQFYSFVNTKRKSKTFPSLLSFRKXTASTDQEIADLFAQFFQTTYSPLLI
FT                 NAQTYAYDIPRSNFISRPTLSECGVIKDLQNVKPVFSPGPDGVPGCVLRYC
FT                 SATLAKPLLKLFNLSLETSTFPAIWKESLIIPLHKKGKKSDAENYRGISKL
FT                 SAIPKLFEKILVPHLQHQCRSVISPCQHGFMKQRSTTTNLLELTSFVITGF
FT                 QNKLQTDVXYTDFSKAFDSVNHGLLLEKLDLIGFPTDLLGWISSYLTGRTQ
FT                 RVLFKNSVSALVYASSGVPQGSHLGPLLFTLFINDLPLVVNDSLVLMYADD
FT                 VKLCLQYTDASYQVKLQSDLNNFQNWCSANLLNLNGSKCKAMTFCRLRPKV
FT                 ATYTLHGVALERINAVEDLGILLDAKLKFSDHISSMVNKARGVLGFIKRWS
FT                 KEFNDPYVTKTLFISLVRPILEYGSCIWDPQYGVHQCLIESIQKNFLIFAL
FT                 RGLNWDANIHLPSYKSRLLLINLPSLANRRTMLGVVFIHNLLKGEIDSQAL
FT                 LGRLNIHVPLRITRNYIPLSLEHCSSNFAQHEPFRVLCSNYNDLYNITSNS
FT                 SPNTLKVSILIHLAQN"
XX
SQ   Sequence 4497 BP; 1188 A; 1087 C; 813 G; 1403 T; 6 other;
     gctcaactct tctctttcaa agcgaacggt tgtgtttttg gcttttgcgt gttctcgagc        60
     gatttaatct ttgaatttct tcccgaatca cctcgttttt gctacttttt tgcaaacgtt       120
     tatctactta aaaaaccgtc tttcgattcc gcgtcgtgca gtgcatttat tgttatctgt       180
     ttgcataaag catttattgc aaacaaatat caacaactgt ggtctgtatt ctaacatatt       240
     ttttactttg ctttgtgcta ttagtaacgg aactttcacc gcttacctct ccagcacaac       300
     atctgtagat ctcttttcta tatctcccac cggcttgtag ctctcgaaaa cacactctct       360
     ctccctctct tatacaactt gtactctctt ataacgcctc tctctcgcta acactctctc       420
     gcttactcta ttgcccctaa ctgtttctct caaactccct ttcttcttcc ctataatatt       480
     tttctggcac agtggtttac attttactaa ttattttgcc aaaatgtctg atattatctg       540
     ttgcattaaa aaatgcaata aaattgtgtc ggttgaccaa gtaagcgtcc actgttggct       600
     gtgtgataac attgcgcact ccaagtgtgc agggtttaag tcagccaccg ttccggatgc       660
     tttgggtcgt tccgactctg gcttacacta ctgttgtgac agatgtcgtg aggcccagaa       720
     ggaaattaga tcttttatgc ggcagactaa aaatgggttc ggtcaggtat tggttgcttt       780
     tcgaaaagct aacgacctgt tttctgcgct ggacactcag ttcaacaatt tacaactgtt       840
     gaatgagtct cctaagcgca aaaaaacgtc ccgtttgccg ccggcggtta ccgccagtaa       900
     tgcaaataac tcccttctcc ctccgtctga tgttcaacag tctccttcat tgtcaccgct       960
     gccgtccacc actccaatcg tgacgacacc ggtaacagcc catatttcgg atcccgaaaa      1020
     tgttgctaag gtgcgtaggc atttgtccga tgagcagtcc gaggtagtcg cattggaccc      1080
     tcccgtgcca aangttctac aagcccaaaa gaatntaccc ttgactcacc agaggaactt      1140
     agggtccgga ttaccggcac ccactggtag cgtgggcaaa ccacccgccc cgccaaagcc      1200
     cttgattggt attcctctag agaaacacat ttttgtttcc cggctttccc ctgatacgtc      1260
     cgaatcggac atcttagctt acattcaagc aaaacttaaa gtcgatatta gggtggaaaa      1320
     tatcactaaa tataaatatt cctacgctag gaacgtggca tctttcaaga tccgtgttcc      1380
     tccgatggct tttgacgata tctgttcgac caatttctgg ccgcaacata ttttcgttca      1440
     agaacatcag cttaagaata aaaaaagaaa aaagtcgccc tttaggagta aagcttccac      1500
     aagtaaacgc tcctgccaac ctaaaaaact aacatcatcc attattcttn cgtaccagaa      1560
     cacaagaggc ttacgctcta aactttctaa tttgttctcg gtaagcttct cgtttgcatc      1620
     ccaggtcatt gtgtttaccg aaacctggct nactccagaa attcttaatt ctgaagtttt      1680
     ccccagtagg tacacaatat ataggcttga ccgatccctc ggaaatggtg gtggagtcct      1740
     aatttcagtg gactctaatc tcgtttccga ggtgataaat cttcaaactg gagacttaga      1800
     atttatcaca gttaaaatct cattgtctag gttaaattta tacatcactt gctcttatat      1860
     tccgcctaag tccgattcct tgacatatga gcggcaccta gcagccattc agtctgtctt      1920
     ctcaatgtta tcggacatgg atcagctggt ggtgttgggt gatttcaacc taccccaggt      1980
     ggcttggtcc atgaacgata acaccttagc tttaacacct acgtcgcatc acgactttac      2040
     tgctggcatg ttagacatgt cactggctca aattaatcat atagggaatt ctttaggtcg      2100
     tttgctcgat ctgtgctttc tctctgatac ggacgccgta tccatataca gagctccacc      2160
     tctcacactc cccgaagatc cttatcatcc aacattagat cttacgatcg atacggggct      2220
     atgcactaag cctaagaaca attacgctga taagaaaatt cgatgttttc gtaaagccga      2280
     ctttaaaaaa attaataact ttatttcaga atttgactgg tccgatttgt acgcatgtac      2340
     cgatatgtcg actgctctag atatatttta tagtacatta aacctagttt ttgatcgctt      2400
     tgttccgttg cggtatccgg ctatggcgga taaaccccct tggtatacaa ggcacctttc      2460
     taatctaaaa aatatcaaat taagattctt taaaaaatac ttaagaacca atagcaatga      2520
     ctgttatgtg cattatatgg tggctcggtc taactttacc gtgcataaca ctcagtgtta      2580
     taagaactat ttagctcgat gtaagaacca gtttgctctg gatccgaaac agttctatag      2640
     ttttgttaac actaagcgta aatctaaaac ctttccgtct ttgctatcgt ttcgaaaanc      2700
     tactgcaagc acggatcagg aaattgccga tctttttgca cagttttttc aaactaccta      2760
     ttcacctttg ttaataaacg cgcagactta cgcttatgat atcccccggt ctaactttat      2820
     ttcccgaccc accttgtcgg aatgtggggt tataaaggat cttcagaatg tgaagccagt      2880
     cttttcgcca ggtccagacg gggtaccggg ctgtgtgctt aggtactgct ctgctaccct      2940
     ggccaaaccc cttttaaaat tatttaacct ttccctggaa acgtccacgt ttcccgctat      3000
     ctggaaagag tcccttatca ttccccttca caagaaggga aaaaaatcgg atgctgaaaa      3060
     ttacagaggt atatccaaac tatcagcaat tccgaaactc ttcgaaaaaa ttcttgtgcc      3120
     tcacttgcag caccagtgta gatctgtcat atctccatgc cagcatggct ttatgaaaca      3180
     acggtctacc actaccaatc ttctggaact aacatccttc gtgatcactg gtttccaaaa      3240
     taaacttcag acggatgtca tntacactga cttcagtaaa gcatttgact ccgtgaatca      3300
     cggccttctt ttagaaaaac tcgatcttat cggttttcct actgatctcc tgggttggat      3360
     tagcagttac ctcacaggta gaacgcaacg agttcttttt aaaaattcag tgtctgcttt      3420
     agtctatgct tcctccgggg tccctcaggg gagccacctt ggtccgttac tttttacttt      3480
     attcattaac gaccttccct tggttgttaa tgactcccta gtacttatgt atgcagacga      3540
     tgtcaagctc tgtctgcaat ataccgatgc ctcctaccag gtgaaactgc aatctgacct      3600
     taataatttt caaaactggt gctctgcaaa cttattaaat cttaatggct ctaagtgcaa      3660
     agcaatgacc ttctgtcgcc taagacctaa agttgccact tatactttgc atggtgtagc      3720
     tctggaaaga attaatgcag ttgaagatct tggcatccta ctcgatgcaa aacttaagtt      3780
     ttccgaccat atttcctcta tggttaataa agctagagga gttcttggtt tcattaaaag      3840
     gtggtcgaag gaatttaacg acccctatgt taccaaaaca ctttttattt ctttagttcg      3900
     tccgattctg gaatatggat catgtatctg ggacccccag tatggggttc accagtgcct      3960
     tattgaatcc atccaaaaga attttttaat atttgctctc cgcggtctca actgggatgc      4020
     aaatatacac cttccctctt ataaaagtag actcttacta atcaatttgc catccctcgc      4080
     taatcgtagg acgatgcttg gggtcgtctt tatccataat cttcttaagg gtgaaattga      4140
     tagccaggcc cttctaggcc gcttgaatat ccatgtaccc cttaggatta ctagaaacta      4200
     tattcctcta tccttagagc attgtagttc gaactttgcc caacatgaac catttcgggt      4260
     actatgttca aactacaatg atctttataa cattacttct aactcttctc ctaacacttt      4320
     gaaagtttcg atactaatcc atttagcaca aaactaactt tcctcgtatc tttactaatc      4380
     cactcggatc tatccccgtg ttccgagccg tacgtcagac ggcagcgccc ctcggtcggt      4440
     tgggcgggag gtgggttgca cgtcaagcaa cgggagtcgc gcgaaaaaaa aaaaaaa         4497
//
ID   CR1-1_DF    repbase;    DNA;    INV; 3196 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3196
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 961-961 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           740..3160
FT                 /product="CR1-1_DF_1p"
FT                 /translation="MDQLVVLGDFNIPGTTWSSDDNSNALQPIGXNEFIDG
FT                 LLDIPLCQVNHVRNSLDRLLDLCLVSNPESVVLSRATPLTLPEDPYHPAFE
FT                 VTIDTGITVKNNAIKPAKRIHCFRKANFLRLNHLISGNDWSDLYSCNNMED
FT                 AITIFYSAIKPFFNSCVPLYNPSTSHKPPWFSKELTHLRNLKSRLYKKYKI
FT                 SGCQSVFGKYIRARSNFTVLNAQCYKNYLVRCRSQFLRDPKRFYNFVNTKR
FT                 RSCSFPPSLSFESRTANTDQAIADLFAQFFQTTYSTVSHSSEQYLYAIPKS
FT                 NLIFRPTLNESSLLLDLQRVTPVYSPGPDGIPGCVLKHCANALCKPLLKLF
FT                 TLSLQTCQFPLVWKESFVIPLHKKGSKSDACNYRGISKLSAIPKLFERAVT
FT                 PHLQHLCRSIISPCQHGFMKRRSTTTNLLELTSFVIDGFKNNFQTDVIYTD
FT                 FSKAFDSVNHFLXIRKLDMMGFPADLLSWIFSYLSGRTQRVLFKNSLSGLL
FT                 RVTSGVPQGSHLGPLLFTLFINDLPSIIAHSRVLMYADDVKLCLQYNDCSR
FT                 HSSLQADLNNFQNWCHDNLLKLNSSKCKLMTFCRVNPHNVTYSLSGGALER
FT                 IALVDDLGVLLDPKLKFXLHISSMVNKARGMLGFIKRWSKEFEDPYVTKAL
FT                 FISLVRPILEYGAPVWSPQYGVHADRXESVQKNFLIFALRRLNWNANLFLP
FT                 SYSHRLLLINLPSLTNRRTMLGTVFIHNLIRGXIDCPXLLSRLNFSVPSRL
FT                 TRNYVPLVLNQCRRNYNVHEPFRVLCSDYNRLFPXLSSSDSLQLLKRLVLT
FT                 FLAQN"
XX
SQ   Sequence 3196 BP; 893 A; 725 C; 577 G; 989 T; 12 other;
     ttccacaaac gagacaaata tttgtttctc ggctggnccc tgatctcaca tcatttgatg        60
     tctcgtctta catcaaagac aaaatnaatg ccgataaagt gaaggtggaa aaattcaact       120
     tttcatacgc taggaacatt tcatctttca agataagtgt tcctgacgaa ctttttaaca       180
     ccatatgctc gagcgacttt tggccggcaa aaatggtggt taaggagttc gtagcgaaaa       240
     taaaaaagaa aggccctacg ggaattaaac tccccggccg ggaccaacaa accgcgccgt       300
     ccttagctcc ttccccaaaa aactaaccac taacttccta attagctatc agaatacaag       360
     aggtttgcgt agcaagctaa ccaaattgta tactgatagc ttttcgtttg catcccaagt       420
     tattgtgttc acagaaacct ggttaaagcc ggagatcttt agctccgaag tttttcccgg       480
     taagtacaca atatataggc atgaccgtcc ctctagacgg ggagggggcg tccttattgc       540
     agtggacgct aacctcacgt cagaagaggt tttgacagaa gatcctttga actttgagct       600
     agaattttta tgcgtaaaac tgtctgtcgc tggcaggtta atttttatta cctgctctta       660
     catacctcct tcgtccganc ttgaggacta ttttaggcac ctatcagtta taaagtcaat       720
     ttcgagttct ttgtccgata tggatcagtt agtagttcta ggtgatttta atatacctgg       780
     aactacgtgg tcctcggatg ataattccaa tgctttacaa cccataggcc anaatgaatt       840
     cattgacggt ctacttgaca tacctctgtg tcaggtaaac catgttcgaa attcnttaga       900
     tcgcttactt gatttgtgcc tcgtctcaaa tcctgaaagt gttgttcttt ctagagcaac       960
     tccacttacg ctgcctgaag atccatatca ccctgctttc gaggtgacta tcgacactgg      1020
     tataacagtt aaaaataatg ctataaagcc agccaagcga attcattgtt ttcgcaaggc      1080
     taactttctg agacttaatc atcttatatc tggcaatgac tggtccgatc tctattcctg      1140
     caataatatg gaagacgcca ttacaatttt ttattcggca atcaaaccgt tttttaactc      1200
     gtgtgttccg ctatataacc cgtcaacatc ccataaacca ccttggttta gcaaggagtt      1260
     gacacacctt aggaatttaa agtccagact ttataaaaaa tataaaattt caggttgtca      1320
     gtctgttttt ggaaaataca taagagctcg gtcaaacttt accgtgctta acgctcagtg      1380
     ttacaaaaat tatttagtcc gttgcaggtc ccagttttta cgggatccca aacggttcta      1440
     taattttgtc aacactaagc gcagatcatg ttcctttccg ccttcgcttt cgtttgaaag      1500
     taggacggct aacactgatc aggcaatagc cgatctgttt gcccaattct ttcaaacaac      1560
     ttactcnaca gtgtctcatt caagtgagca atatttatac gcaataccta agtcgaacct      1620
     aatatttcgt cccaccttaa acgaaagctc cctacttttg gatcttcaac gtgttacacc      1680
     agtttactcc ccaggtcctg acgggattcc tgggtgcgtt cttaaacact gtgcaaatgc      1740
     attgtgtaaa ccccttctca agctgtttac cctatcccta caaacttgtc agtttcccct      1800
     cgtttggaag gagtcatttg ttattcccct tcataaaaag ggaagcaagt cggatgcttg      1860
     caattataga ggtatttcta aattgtcagc aattccaaag cttttcgaac gtgcagtaac      1920
     cccccacttg cagcaccttt gtagatcaat catatctcca tgccaacacg gatttatgaa      1980
     acgcaggtct accacaacaa atcttttaga gctcacgtcc ttcgtgatag atggctttaa      2040
     aaataatttc caaactgatg tcatttacac agacttcagt aaagcatttg actctgtaaa      2100
     tcacttccta ntgattcgca aacttgacat gatggggttt ccagcagatc ttttaagttg      2160
     gatctttagt tatctcagtg gccgaacgca aagagtcctt ttcaaaaatt ccttaagcgg      2220
     tctcctcaga gttacctctg gtgtaccaca aggaagccat ctgggaccat tacttttcac      2280
     cttgttcatt aatgatcttc catcgatcat tgcgcattcc cgcgtactta tgtacgcgga      2340
     cgacgtaaaa ctgtgtctgc agtataatga ttgctcccgt cattcaagcc ttcaggcaga      2400
     cctaaacaat tttcaaaact ggtgtcacga caatttactg aaattaaaca gctccaaatg      2460
     caagctgatg acgttctgtc gggtcaatcc gcataacgtc acctattcgc taagtggtgg      2520
     tgccttggaa agaatagcgc ttgttgacga tcttggcgtc ctattggacc ccaaacttaa      2580
     attcnctctt catatttcga gcatggttaa taaagctagg ggaatgcttg gatttattaa      2640
     acgatggtcg aaggaatttg aggatcctta cgttaccaag gctttattta tatcgttggt      2700
     ccggccaatc ctcgagtatg gggcacccgt ttggagtcct caatacggag tacatgctga      2760
     tcgcatngaa tcagtacaaa aaaacttttt aatttttgcc ctacgccgcc ttaactggaa      2820
     tgcaaaccta ttcctaccct catattctca tagattgctc ctcattaacc tgccctccct      2880
     tactaaccgt agaacgatgc ttggtactgt atttattcat aaccttatac gtggtganat      2940
     tgactgtcct nacttgctga gtagactaaa tttctcggta ccaagtagat taactagaaa      3000
     ttatgttcct ttagttttaa atcagtgtag acgtaattat aacgtgcatg agcctttcag      3060
     agtactttgt tctgactaca atagactttt tcctatntta tcctcttctg actctctgca      3120
     gctccttaag cgattagttt taacatttct ggcacaaaat tagatcgcta aatttaaact      3180
     taaattaaat ttaaaa                                                      3196
//
ID   CR1-1_DK    repbase;    DNA;    INV; 4554 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.07, Created)
DT   03-JAN-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4554
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1328-1328 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..1602
FT                 /product="CR1-1_DK_1p"
FT                 /translation="MATCCFPKCPNGQKISSRQVTVYCWLCDNIAHIGCAD
FT                 LGQNGSRITDRIRENPGLDWTCPSCLHIKSDMRVFMRQTHLEFQSLAAGFK
FT                 ELSTRFQKAEHHFKSLKLLSDPANKNRSNLSXKFLSLPDPECPLMQFTPRA
FT                 KPAAVDNGSGDDAASIPTSMVEDLVRPLDQQPVNVVQASTLHAAASAEVAA
FT                 PVPILGGGEAAMLPVQQPVYTDQASTSRAAAINDASVVSNANPVAPPVVTI
FT                 SAPAVTRSGPQQSTISGVAKRGPVPLAGVAPKKQIFVSRLNPGASEGDVKT
FT                 HLSSKLNVSVTEFSVSKFNFKERRDISSFKITISDLLFSKALDPSVWPEHA
FT                 IVHEFEHKSTPRARGPQTPSTRPPKN"
FT   CDS           1962..4445
FT                 /product="CR1-1_DK_2p"
FT                 /translation="MQHLSLIQEIHSSLGINDHLIVTGDFNLPSISWMPLP
FT                 DSNVLVPTSPHDLIHGLIDHSLGQLNFVRNCSNNVLDLIFVSEFANAYVTR
FT                 IDPLSSPEDAYHPTLELTLEASTPLLLCPEAEPATFRCFRKAKFTEMNHHL
FT                 SLTDWTFLNSTEDPSDIVKRFYEIMYSVFDMYVPSFPSPEVSHKPPWFSRR
FT                 LSYLKNLKSRLFKKYSKSGLQVDHSRYLTARTNFLAHNSECYRNHLNRCKI
FT                 EFQANPKQFYAFVNSKRKSQQFPSCLHFDNASASNEPDIANLFAKFFQTTY
FT                 SQTNFDNNSEYSFPLPHSNCIFMPVISEDDVLHNLRTIKLSFSSGPDLVPS
FT                 CVLRNCASSLCRPLSRLFQLSLQHSFFPKVWKESFIIPLHKKGSKSNIEHY
FT                 RGIAKLSAIPKLFEFLITTQLQHQCSSIMSPSQHGFMKRKSTSTNLLEFVA
FT                 VIRNAFKNNTQTDVIFTDFSKAFDSVNHQLLLKKLCLLGFPVTLIKWISTY
FT                 LSNRTQRVAFKGSFSNLVHVTSGVPQGSHLGPLLFGIFINDLPQVILHSYV
FT                 LMYADDVKLCLPLVNPDSAQLLQADLNNMLSWCTHNLLFLNNSKCKYMSFY
FT                 RRNCFQANYSLGTSVLERIHSVTDLGVLFTHNLSFTDHIGIIVGKAKGVFA
FT                 FVKRWSKEFDDPYTTKLLYISLVRPILEYCSCVWSPQYAKYQDLIESVQKQ
FT                 FLLFALRGLDWDPHRHLPPYADRLRLLDLPSLKDRRTCHGVMFLHKLINGY
FT                 IFSSNLLKQIRFSVPSRPSRYFRPIALDICKTNFEAHDPFRVLCSLYNDMY
FT                 SLLYFEMSLDFNKNNILRHLSLPLTT"
XX
SQ   Sequence 4554 BP; 1157 A; 1104 C; 843 G; 1448 T; 2 other;
     cgtttcgcca agctttgagt tggacgtgct ttacatcgct ctacatttat tcaaagtttt        60
     cttagtgaaa tcctatttat caaagcccaa attttcggca agtggtcggt gtttccgtga       120
     acttcataat caataaacaa ccggaccttt gtaaataaag tctgtgactt tatcgtcgta       180
     aaacaatttc ggttttacaa ttgccttgcc ttcctattct tgtgcattgt gtttaccgct       240
     tatcgctgca tcgccttgtg ttgttgttgg cgctagctaa atcaataaca caaatttctt       300
     atttttcggc gcttagataa aagcttttat ttgtgcgctc ttcgctttct gttttgatcg       360
     gtctgttcgc cgcgaaactt aaacaatttt tttcaaaaaa caattgtata atttgttttg       420
     atcggccatt tcgtcgcgca aataaattaa accaattcgt aatttacttg gataaagtat       480
     ttttttattc caaaaatggc tacgtgttgt ttccctaagt gcccgaacgg ccaaaaaatt       540
     tcttcgcggc aggtcactgt ctactgctgg ctctgcgata atatcgctca cattggatgc       600
     gccgatctgg ggcaaaatgg atcgcgtatc accgatcgca ttcgcgaaaa tcctggattg       660
     gactggacgt gcccgagctg cctgcatatc aaatccgata tgcgggtctt catgaggcag       720
     actcacctgg agtttcagtc gttggcggcc ggctttaagg agttgtcaac tcgcttccag       780
     aaggcggaac accatttcaa gtcgctaaaa ctgctaagtg accccgcaaa caaaaacagg       840
     agcaacctgt ctganaagtt cttatctctt ccagaccctg aatgccccct tatgcagttc       900
     accccacgtg ccaagcccgc agccgtggat aacggctctg gtgacgatgc ngcatcgatc       960
     ccaacttcta tggttgaaga tctcgtcagg ccgttggatc agcagcctgt caacgttgtc      1020
     caggcgtcca cgttgcacgc tgcagcctct gctgaagttg ctgcaccggt ccccattctc      1080
     ggagggggcg aagccgccat gctcccggtt cagcagcctg tctacaccga tcaggcatcc      1140
     acgtcgcgtg ctgctgccat caacgacgcg tcggtggtgt cgaatgccaa cccagtggct      1200
     cccccggtgg tcactatctc ggcgccggcc gttaccagaa gcggccccca acagtcgaca      1260
     atttctggcg ttgccaaacg cggaccggtg cctttggctg gtgttgctcc gaaaaaacag      1320
     atttttgttt cccgcctcaa tccaggtgct tctgagggcg acgttaagac ccacttgagc      1380
     agcaaattga atgtttctgt tactgagttt agtgtctcca aattcaattt taaggaaaga      1440
     cgtgatatat cttcgtttaa aattacaatt tctgacctac tattttctaa ggctcttgat      1500
     ccttctgtgt ggcctgagca tgcaattgtt catgaattcg aacacaaaag tactcctcgt      1560
     gctcgcgggc ctcaaactcc ttcaactagg cctccaaaaa actaatagac tcttttgttc      1620
     ttcactatca gaatgttcgt agtttacttg gcaagctcag taggctgcac gtcaatagtg      1680
     tctctttcga tgccaatgtt attgtcttta cagaaacatg gctcaactcc tctgtgtctg      1740
     actctgagat tttttcaggg aactatgcca tctttagacg tgatcgtcct atacggacag      1800
     gcggtggtgt tctcattgcg gttaaatccg atctggtttc caatatcatt tctaaaactg      1860
     acactgatat agagtttgtg gcggttcgca tccaggttta cgattattct atctacgttt      1920
     catgctcgta tattccacct aggtctgaca ctgatattta tatgcagcat ttatccttaa      1980
     ttcaagaaat tcattcttcc cttggtatta atgaccacct tatcgtcacg ggtgatttta      2040
     atctaccctc catttcctgg atgcccttac ctgattcaaa tgttcttgtt cccacctcac      2100
     cccacgattt aattcatggt ctcattgacc attcattggg acaattaaat ttcgttagga      2160
     actgcagtaa taacgtctta gacctcatct ttgtctctga gtttgccaat gcctacgtca      2220
     ctagaattga ccctctttct agtcctgagg acgcttatca tcccactttg gagctaaccc      2280
     tcgaagcctc cacaccatta ttattgtgtc cggaagctga gcctgcaacg tttcgttgct      2340
     ttcgaaaagc taagtttaca gaaatgaacc accacttatc cttaacggat tggactttct      2400
     tgaactccac agaggatccc tcagacatcg ttaagcgttt ctatgaaata atgtactcag      2460
     ttttcgacat gtatgtccct tcatttccct caccagaagt ttctcataag cccccttggt      2520
     tttctcgtcg gctttcatat ctaaaaaatc tgaaatccag actgtttaaa aagtacagca      2580
     aatctggtct tcaagtcgac cattcgagat atttaactgc tcgtacaaat ttcctagcac      2640
     acaattctga atgctacaga aaccacttaa atcggtgcaa aattgagttt caggctaacc      2700
     cgaagcaatt ttacgctttc gtaaactcga aacggaaatc tcaacaattt ccttcatgtc      2760
     ttcatttcga taatgcctcc gcttccaatg agcctgatat cgcgaacctg ttcgcaaagt      2820
     tcttccagac tacatactca caaactaatt tcgataataa ctcagagtat tcttttccac      2880
     tcccgcactc caattgcatt tttatgcctg taatcagcga agatgatgtt cttcataatc      2940
     tcagaacaat caaactttcc ttttcctctg gtccagatct tgtacctagc tgcgttctga      3000
     gaaattgtgc cagctcatta tgtagaccac tgtctagact ttttcagtta tcacttcagc      3060
     attcgttttt ccccaaagtt tggaaagaat cgtttatcat tccgcttcat aaaaagggca      3120
     gtaaatctaa tattgaacac tatagaggta tagcaaaact tagtgcgatt cccaaattat      3180
     tcgaatttct aattactact cagcttcagc accaatgtag ctcaataatg tccccctcac      3240
     agcatggctt catgaaacgt aaatcaacgt ctacaaatct ccttgagttt gttgctgtca      3300
     ttagaaacgc gtttaaaaat aacacccaaa ccgatgttat ctttacagat ttcagcaaag      3360
     ctttcgattc ggtgaatcat caattactgc tgaagaaact ttgtctgttg ggttttccgg      3420
     ttacgttgat caagtggatt tctacttatt tgtcgaaccg tactcaaaga gttgcattca      3480
     agggttcatt ctcaaacctt gttcacgtga cttctggtgt tcctcaaggg agccacctcg      3540
     gtcctcttct atttggcatt tttataaatg atctgcccca agttattctc cactcttacg      3600
     tcttgatgta tgctgatgac gtaaaactat gtttgcctct tgtgaatcct gactctgctc      3660
     agcttttgca agctgattta aacaacatgt tgtcctggtg cactcacaat ttattgtttc      3720
     ttaacaactc caaatgtaaa tacatgtcgt tttaccgcag aaattgtttc caggctaact      3780
     attccttagg cacgagtgtt cttgaacgta tccactctgt aacggatctt ggtgttctat      3840
     ttacccacaa cttgagcttc accgatcaca tcggtataat tgtcggtaaa gcaaagggtg      3900
     tttttgcttt cgtaaaacga tggtctaagg aattcgatga tccctacact acaaaactct      3960
     tatatatatc cctggttcgg cccatactcg aatattgttc gtgcgtatgg tcccctcaat      4020
     atgcaaagta tcaggacctt atcgaatcgg tacagaaaca attccttttg ttcgctcttc      4080
     ggggtttaga ctgggaccca catcgccacc ttcctccgta tgccgacaga ctacgccttc      4140
     tggacctgcc ctctcttaag gatcgtcgga cctgccatgg cgtgatgttc ctgcataaat      4200
     taataaatgg atatattttt tccagtaatc ttcttaagca aatacgcttt tcagttcctt      4260
     ctaggccatc acgttacttt cggcctatag ctttggatat ttgtaaaact aatttcgagg      4320
     cacacgatcc ttttcgcgtt ttatgttcgc tttacaacga catgtactct ctgttatatt      4380
     ttgaaatgtc attagacttt aacaaaaata atattttaag acacctatcc ttgcctctga      4440
     ccacctgatg tgagtcggag catatcatta aaaaacactc cttatccggt ctgaggtaag      4500
     gatatggatt taaaatggca gatatttgct attcttaata aataaataaa taaa            4554
//
ID   CR1-1_DMo   repbase;    DNA;    INV; 4975 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4975
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4975 BP; 1283 A; 986 C; 776 G; 1930 T; 0 other;
     tattcagaga gagttctcag tgagagttaa cagacgtgtt tactattgtg ctcttcaatt        60
     attcttgttt tcttagttaa ttatttttat taaatttcac ataattgcgg ttcggttgta       120
     tatagcaaat atctatatta tcctgtgcaa ggtttgatcc gttgttcact gcgtttttaa       180
     taatttgctt ttttaatttg tgaagctttg tgtgcagtgt cggttcatta gtttcattat       240
     ttgcattttt gctttagtgt ttctatttgt tggcgctctc cccagttcac tctttctaag       300
     tttgtgtgag tgtgtgcata agttgctctc actatctacg gttgttgtat ttgcctctct       360
     tgaatctttg atttttgtgg tgtgcaagta tactctctcg ctgaggactt ttgatctgct       420
     ccgtaacggc tgtttttgtt gttgactcgc tctctcaaca tatattttcg ttgcgctctg       480
     taacggctgt ttgttgttgg actcgctctc aacacattta tacctctctt tgttgtgaca       540
     tttctgttta cattcagtaa ttttgtgatc tatcccgatt gccaatatga gttgctgcaa       600
     aaaagcttgc actttcaggc aaacagttga ttctgcacaa gcgcaattta taagttgctg       660
     gctgtgtgat aacatgatgc atactaagtg tgcaggtctt actgggcgtg aatatgacaa       720
     gattatgtct actactaaag ctggtagtgg aggcatacgc tggtcttgtc cgatttgttt       780
     ggaaaaacaa ataaactttt ctaaaatgta tagtgctgtg aggtctcagt ttttaaaact       840
     gaagaagatt tctatgcagt tgaccagtga catggctgct gctgaggaaa tcttaaatca       900
     gtacggcttt gaaagtcctc tctctcaatt ggatactcct ttgttgtcgg taactccttc       960
     tgtaatagta ccgtcaccta attcgcttgc tcctccctca ccttgcgctt ctgttttgtc      1020
     gtcggctccc aattctctag atcctccttc accttgtccc atatctgttt ctcctattga      1080
     cgcttctatt gaaactcaag cccctgtccc aaatttggat gctacttcta ttgttgctca      1140
     aacaaagagt gacaataagt cagcctctca tagcattacc ttatctgttg tctctcctag      1200
     aaagcaagtt ttcttatcta ggctttcatc tgacactacc attgaggcag tatcggcttt      1260
     tatctcaaat aagattccgg ttaatgtttt tatatcgaag tttagtttcg cgacaccgcg      1320
     tgaaattgct tcgttcaaaa tcaatgtgcc tgtagaacac tttaaaaccc tttgtgaccc      1380
     taatttctgg ccacctcatg tagttgttca tgaatttaaa cccaaaaatc gtaacagatc      1440
     gatgcctatt tcagtaaatt taccttcggt gcaatcttca tcaaacgttg taccaaaaaa      1500
     ctaaattact tacaaacctc ttctcagctg tccctgattt atcaaaatgt acgtggctta      1560
     aactcaaaac ttaaaagtct tttcttgcat agtttcagtg tacaatatga tattatcgct      1620
     ttcactgaaa catggctaag tagtaatatt cataatagtg aaattctttc aagtaatttc      1680
     actatttata gactcgaccg ttcgtcgcgc agaggtggtg gggtgttaat tgcggttaag      1740
     tccattatcc actctgaatt gtttaccttt tcgtcccttt atgatgtgga gattatagcg      1800
     gttaaattaa ctctgccatc gtgctcatta tacatcacat gttcttatat ccctccctct      1860
     tctgatgtac aagtttatgc tcaccacata aattgtatta aacaagttaa tgaacatgta      1920
     aatgatagag attgtcttct tgtgttgggt gattttaata ttccgaacac ttcttggtct      1980
     tcaacttgta atgcaaatta ctttattccg acaattgatc actatctttt tgatgaattg      2040
     tttaacctgt ctatgtttca gatgaactct atttcaaacc atcttaatcg cactcttgat      2100
     cttgtgtttg ttaatcatga ttcgctaatt aatgtcgcga gatcaactcc tttctcctta      2160
     cctgaggata tatatcatcc cactttagag gttttattaa ctatcgacaa tcctccctct      2220
     aatactccaa tgccttctaa acttagtcgc tgttatcgta aatgcaattt cgttttgctt      2280
     aacgaactaa ttaattcaac agactggtct attttatatg agtcggttga tattaattta      2340
     gcatcatcgt ttttttattc taccttaaac tctattctgg atgtttgtgt ccctctccgc      2400
     cgtatttcgc cagtttcaaa taagccacct tggttcacca aaactctttc gaacttgaga      2460
     aacattaaaa ctaaatgttt taaaaattac aaaaagtctg gttcaagtat tgactggtcc      2520
     aaatattcca ttgccaagtc aaacttcaat cttttaaatt ctagctgtta tgagaattat      2580
     cttacacgtt gcaaacgtca gtttactcgt gatcccaaac aatttttctc atttgtaaac      2640
     tcgaagcgta aatcctctgg tttgccgtcc tcatttgtcc ttggaggtga aaaaacatgc      2700
     aatgatcagg attcctctga tctatttgct gatttttttc aatccactta ttcttctgct      2760
     gatctctaca gcaactcata tccttattct cttcctgaat atggatctat aaatactccc      2820
     aaagttactg catcctctca tggctgcagc cattaagaca ttgaaatcat ctttctctcc      2880
     tggtgctgat aatattccta gttgtgtgat taaagagtgc agtgtttctc ttcagtcaca      2940
     attactaaaa ttgtttaact tgtccttgga tacttctgtg ttcccttcaa tttggaaaga      3000
     atctttcatc attcccttat ataaaaaagg tggaagatct gatatttcca attatagagg      3060
     catcgcgaaa ttatctgcta ttccgaagtt atttgagaaa atcataacat cggccttgca      3120
     gcatttttgc aaatcgatta ttcaaccatc tcaacatggt tttgttcaaa atcgatctac      3180
     gtcctctaat ttacttgagt tcacgtcgct tgttaatgac agcttttcca aaaaaatgca      3240
     aaccgatgtt atttatacgg acttcagtaa agcatttgac tcagtacatc attacatact      3300
     aattcttaag cttgaacgct taggattttc acccagtctt gtctcttgga tttcatccta      3360
     tttaacgggt agaacccaaa gagtcttgct gagaacagct atgtctaaac ttatctttgt      3420
     ttcgtctggt gtacctcagg gtagccattt gggcccattg ctcttttccc tttttataaa      3480
     tgaccttcct agttgtatct cgtattccac tatatttatg tatgctgatg atgtaaaact      3540
     ttgccttcca tactccaggg caaatggaca tcttcacctt caagatgacc taaatgcatt      3600
     tcaactttgg tgtgtggcaa accagcttga cctaaattgc tcaaagtgta tgacaatgac      3660
     cttcagtcgt accgttcctc taattgttga ttataaaatt agcaataatt ccttacgacg      3720
     catctttaca gtcaaagatc ttggtgtatt ctttgactgt aaacttaact ttaatcttca      3780
     tatttctacc ataattaatg aagccaaaag tgcgcttggc tttattaaac gttggtctaa      3840
     ggaatttaaa gatcctttta ttaccaagcg cttatttact tcgcttgtgc gtcctatcct      3900
     agagtattgt tctgtcgtat ggtctccgca acataaactg tatcaggatc gtatcgaatc      3960
     ggtccaaaaa cagtttcttc tctttgcctt aagagacctt agatgggaca gtaatttacg      4020
     attaccgtct tatcatagta ggctccagct aattgatctt ccatcgctaa ccaatcgcag      4080
     aacaatttta ggaattgttt ttctgcataa attgattagt ggtgatattg attcgtcctc      4140
     tttgttgggt cgtctaaatt ttttggttcc gtcccgagca actagacact atcgtccgct      4200
     tcatttacct gtgtgcacta gggattattc tttgcacagt gcgtttcatg ttctttgtgt      4260
     taattttaat aaatattatc acgttttttc cttagagctc tctcctccta aaataaaaag      4320
     tgtactatca gcttatctta gggaaatcac tcacaatgcc caggcataag cattggcata      4380
     cgcttttgct gctaatgttg tgttagtgat ttctcaattc tattcttata ctctattttt      4440
     ggctcttcca ttactctttt ctttttatta tttcttattc tttttcatta acttttcttg      4500
     caacttctct tattaccggc cttttttctt tttctatact ttacctcttc ttattttatt      4560
     cttttttttc ctttttttat tattgttttt ttttttttaa ctccttttat ttatttattt      4620
     attttatttt attttttttt tattattatt attatttttt tattttttat tattatttta      4680
     agaattattt taagtatgct aaatattgtt taataaccta cattttaata ttttattttt      4740
     ttaagttttc ttactaacac tttcttttca tagcttcaat agtatcactg accatatttg      4800
     gctgtgagac gtgggcatag ccggccggac tggcaaataa aataccccca tcgggttggt      4860
     gttactattg aaattatatc gtgtactttg tataggcttt tttaaattaa aattgactct      4920
     catttttgtc aatagcttta agaaaataaa taaataaata aataaataaa taaat           4975
//
ID   CR1-1_DPer  repbase;    DNA;    INV; 4691 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4691
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1643-1643 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..1558
FT                 /product="CR1-1_DPer_1p"
FT                 /translation="MEFAVVCAKKTCKKQITHDQPNVPCWLCDSVVHAKCA
FT                 GFSGLVSDAIAKRNGLHYSCEACRAVEKDMVAFMRQTRSGFKELTVGFKNQ
FT                 YDRLLAMEAQFSGLKLLNESPRRKKVTPRDLQVPTVTQPCAAEKLTPTTPS
FT                 VQQLISFATPKATKAAGDADSVAEFIASENVQPSTSAASVSVVSASSLVVP
FT                 SIPIPPVNRRSGPPDIATTGTRPAVTKPLVGVPPKRQVFVSRLAPDLTSND
FT                 VTAFIQSKIKAVGLKVEKFNFSYAREIASFKISISPTQFDTICSTKFWPEH
FT                 LVVKEFKAKKKNRPPISLPNLSSVPPSTSTSSSSTSRLAPTFPKN"
FT   CDS           1462..4386
FT                 /product="CR1-1_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="APHIASKSFQRATLNLNFLFLNFPSCSNLSKKLTSLL
FT                 VTYQNVRGLRSKLSILFRDSVAFASHVIVFTETWLKPDILSSEVLAGRYTT
FT                 FRKDRSSRRAGGVLIAVDSYFTSEHFTVQVQQELEFLCVKLILPAFAIFIT
FT                 CSYIPPSSDISIYEQHLSALTAVASSLSDKDRMIVLGDFNLPGTVWSSVNE
FT                 SSILVPMSRHDFVDGLLDLSLSQVNHVKNSLGRLLDLCFVSDPTIVLLTRA
FT                 LPLTIPEDAYHPTFEVSLDIGPTVLDRSSRLPERVRCFRKAEFAKLNNLIR
FT                 DFDWSALYLCTDVTKGTNIFYNALGTFFDSCVPLSCPIRSGKPPWFTKELS
FT                 SLKNLKSRLYKKFQEVGSPTSHSRYVIARSNFSVLNAQCYKNYLSRCRIRF
FT                 SQDPKQFYCFVNSKRRTSAHPSSLSFCNTSANNDQAIADLFAQFFQTTYSE
FT                 ERYSGQPYPYGLPRSNGIFSPLLNEYSLLQDLRLVKPVFSPGPDGVPGCVL
FT                 RYCAEALCGPLLKLFTLSIDSSCFPPIWKESFIIPLHKKGSKSDAKNYRGI
FT                 AKLSAIPKLFEKVLTPHLQHLCKSLISPTQHGFIRRRSTTTNLLEFTSFII
FT                 KGFQGNLQTDVIYTDFSKAFDSVNHSLLAHKLDLLGFPPNLLRWISSYLCS
FT                 RSQRVLFKNSLSLPVKVSSGVPQGSHLGPLLFTLFINDLPSVXTYSRVLMY
FT                 ADDVKLCVQYKDISFHSRLQSDLNSFQSWCCANLLHLNASKCKVMTFHRSN
FT                 PLLAPYTLFGGSLERITLVDDLGVMLDPKLKFSEHISTMVNKAMGVLGFIK
FT                 RWSKEFDDPYITKTLYTSLVRPILEYGSCVWCPQYKVHQDRIESVQKNFLL
FT                 FALRGLNWDAGVRLPSYSSRLLLVNLPSLVNRRKMLGVIFMHNLIRGDIDS
FT                 PDLLSRINFTIPIRLTRNFIPLFLPLCRSNYSLHEPFRVLCSDYNSLYHII
FT                 SSTNSLPLIKLLILTHLSSN"
XX
SQ   Sequence 4691 BP; 1143 A; 1129 C; 934 G; 1484 T; 1 other;
     cgttctcttt cgtagtgatc agacgtgttt ttgttttgcg ctccgcattt ttccttttgt        60
     ttcgaataaa cagccggagt tttcctaatt aaattctaaa tatactttct aaccagacaa       120
     caatctggaa acctattcat ttacgcgagt gcatgccttt tgatttgtgt taaaatatta       180
     tttaactttt tatttttcgg cgtcggcttg tgttgtgttg tgttgttgca gtgagtgagt       240
     attgcattgc agtccgctct cgtctggtag cttttgttgt cttatcactc tctcgctatc       300
     acctcaacct caataactgt tctttctctc tcgctctttc aactttctga gcaatagcgc       360
     tctctgtcta gtagctctcg ctataaccgc tctccactct gctctctttt ttttcttacc       420
     aattccgctt tgagcgttgt ctggcacatt ggtctgatac caatttgttt tggaaatttt       480
     taattttttt gattttaatt tttctttgca aattttctta agaaaatatt tgaataataa       540
     aaataaaatg gaattcgctg tggtctgcgc caaaaaaacc tgcaagaagc agatcactca       600
     cgatcagcca aatgtcccct gctggctctg cgacagcgta gtccacgcaa aatgcgcggg       660
     attttctggc ctcgtgagcg atgccatagc caaacgtaat ggcttgcatt acagttgcga       720
     ggcatgccgt gcggtggaga aagacatggt ggctttcatg aggcagacgc ggagtggctt       780
     taaggagctg accgttggtt tcaaaaacca atacgatcgg ctcctagcca tggaggctca       840
     gtttagcggt ttaaaactgc tgaatgagtc tccgaggcgc aaaaaggtca ctccgcggga       900
     cctgcaagtg ccaaccgtca ctcagccgtg cgccgccgaa aaattgactc cgaccactcc       960
     aagtgtacag cagttgatct cgtttgccac tccaaaggca acgaaagctg ctggcgatgc      1020
     agattcggta gccgaattca tcgcctcgga gaatgtgcag ccaagtacgt ctgctgcgtc      1080
     cgtgtccgtg gtgtccgcaa gttcactagt tgtcccgtct atcccgatcc caccagtaaa      1140
     tagacgttcc ggacctccgg atattgccac cacaggtact agacctgcgg tgactaaacc      1200
     actggtggga gtcccaccaa aacgacaagt ttttgtttca cggctggccc ctgacctcac      1260
     atctaatgat gtaactgctt tcattcaaag caaaataaaa gccgtgggct taaaggtgga      1320
     gaaatttaac ttctcttatg ccagggagat agcgtcgttt aagataagca tctccccaac      1380
     tcaatttgac accatttgct ccaccaaatt ttggccggag catttggtgg tgaaggagtt      1440
     taaggctaag aagaagaata ggccccccat atcgcttcca aatctttcca gcgtgccacc      1500
     ctcaacctca acttcctctt cctcaacttc ccgtcttgct ccaacctttc caaaaaacta      1560
     acttctcttt tagtaaccta tcagaatgta agaggcttgc gtagtaagct cagcattctt      1620
     ttccgggata gtgttgcatt tgcttcccac gttattgtgt ttactgaaac ctggttaaag      1680
     ccggacattc ttagttccga ggttttggca ggtcggtaca caacttttag aaaggaccgt      1740
     tcgtctcgac gtgcaggagg ggttctaatt gcagtggact cttacttcac gtcagaacac      1800
     ttcacagtcc aagttcaaca ggaactggaa ttcctgtgtg taaaactgat tcttcccgct      1860
     ttcgctatat tcattacttg ctcgtatatc ccaccttctt cggatatttc aatttatgag      1920
     cagcacttgt ccgctttaac cgctgttgct tcctcgctat ctgataaaga tcgtatgata      1980
     gttcttggtg acttcaactt gccaggaact gtttggtctt cggtaaacga gtctagtatc      2040
     ctagtgccca tgtcacgaca tgactttgtt gacggcttgc ttgacctgtc cctgtctcaa      2100
     gtcaatcatg tgaaaaattc cttgggtcga ttgcttgatc tatgctttgt atcggatccg      2160
     accatagtgt tgttaacccg agcccttccg ctcactatac ctgaagacgc ctaccaccct      2220
     actttcgagg tgtcgctaga cataggacca actgtattgg atcggtcgag tagactacct      2280
     gaacgtgtcc gctgctttcg taaagccgag tttgcgaagc ttaataacct aattagggat      2340
     tttgattggt ccgctttgta cttgtgcact gatgtcacaa aaggcacaaa cattttttac      2400
     aatgctcttg gcacattttt tgattcttgt gtcccgcttt cttgtccgat tagatctgga      2460
     aaaccccctt ggtttaccaa agagttatcc agtctaaaaa acttaaaatc aagactttat      2520
     aaaaaatttc aagaagtggg ttctcctact tctcactctc gttatgtaat agctcggtca      2580
     aacttttcag ttcttaatgc tcaatgctat aagaactacc tatctcgttg caggatacgt      2640
     ttttctcagg accctaaaca gttttactgc ttcgtaaaca gtaagcgtag aacgtccgca      2700
     cacccatcct cgctatcatt ttgtaatacg tcggcaaata atgatcaggc aattgccgat      2760
     ctttttgccc agtttttcca aaccacctat tctgaggaac gctactctgg tcaaccgtac      2820
     ccatacggat taccgaggtc gaacggcatt ttcagtccct tgttaaatga atattcccta      2880
     cttcaagatc ttcgactagt taagccggtg ttttcaccgg gtccagacgg ggttccaggt      2940
     tgtgtactca ggtactgcgc cgaggctctg tgtggaccat tgcttaaact attcaccctg      3000
     tccattgatt cctcttgctt ccccccaatc tggaaggaat cgtttataat tcctctccat      3060
     aaaaaaggta gcaagtctga tgcaaaaaat tatagaggta tagcaaagtt atccgctatt      3120
     cccaaattgt ttgagaaggt tttaactccg cacttgcaac atctctgcaa gtcacttata      3180
     tctccaactc agcatggatt tataaggcgg cgatcaacca ccacgaactt gttagagttt      3240
     acctctttca ttattaaagg ctttcaaggt aacttacaga cggatgttat ttacaccgac      3300
     tttagtaaag cattcgactc tgtaaaccat tcccttttag cacataaact tgacctttta      3360
     gggtttccgc ccaacctcct gagatggatt tctagctatc tttgttctag gtctcaaaga      3420
     gtcctcttca aaaactccct ctctttacca gtaaaggttt cttcgggagt accacagggc      3480
     agccatctag gccccttact cttcacactc tttattaatg acttgccttc agtawtaaca      3540
     tactctcgag tacttatgta tgcggatgat gttaaactct gtgtccagta caaggacatt      3600
     tcatttcatt ctcgcttgca atccgatctc aatagctttc agtcatggtg ttgtgcaaac      3660
     ttgttacacc ttaatgcctc gaaatgcaaa gttatgacat ttcatcgttc taaccctttg      3720
     ttggctccct acaccctatt tgggggttct cttgagagaa ttaccctggt ggatgatctg      3780
     ggtgttatgt tagatcccaa gttaaagttt tccgaacaca tttctaccat ggtaaataag      3840
     gccatgggcg tgcttgggtt tataaagagg tggtcaaagg aatttgacga cccctatata      3900
     acaaagactc tctatacctc gcttgttcgt ccgatcttag aatacggctc ctgtgtatgg      3960
     tgccctcagt acaaagtaca ccaggaccgt atagaatcag tacagaaaaa ctttttactc      4020
     tttgctctgc ggggccttaa ctgggatgcg ggtgtaagac tcccatctta ctctagtaga      4080
     ctattattag taaacctccc atccttagtt aaccgtagaa aaatgcttgg tgtgatattt      4140
     atgcacaact tgatcagggg tgacatagac agccctgatc tgttgagccg cataaacttc      4200
     acgattccta ttagactgac tagaaacttt ataccgttgt tccttccact ttgtagatcg      4260
     aattattcct tgcatgaacc gtttagggtc ttatgctcgg attataattc cctctaccat      4320
     attatatcct ccactaattc tcttcctctt attaaattac taatccttac acacctttct      4380
     agtaattagt aattgtagtg gtatttgtat tttgtatttt attgcatgct taatttctta      4440
     ataagtttag tgctaatttt cctcgaatgt tagtctaata tctatctttc ttgcatgctc      4500
     gcgtttggtt cggctacgca ccgcgcgtca tgcggcagcg cccctcggtc ggttgggcgg      4560
     gaggagggct gcgttttgcc tgggatccgc gcgtaacagc cttctgctgg tgtcacacgg      4620
     gccacttgac ggtgcagtaa ttgcatcgcc tcttgataga tgcagtcatt gcatgtcaac      4680
     gtcccatata t                                                           4691
//
ID   CR1-1_DRh   repbase;    DNA;    INV; 4493 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4493
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1675-1675 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..1484
FT                 /product="CR1-1_DRh_1p"
FT                 /translation="MAFCSLKNCKKVISAGQQSIPCHTCDKIYHAKCLGYS
FT                 GLVRDAIDKRSGLRYYCDECIVYENQAIXIRRLTKSSVTELIRNCRKNTDL
FT                 LVALESQLTSRMLAEPDSPKRKKVAVGGHSMAGAVQPAARDSIPAQLPILG
FT                 ATQMVLRSGAKSDSVPEVAGTDVAPLGTSALSDQNKVVAPTPHVDLTSGLP
FT                 ADTGSTDTNSVVPKRVACVVPKTVTCVRVPQLKHVFVSRLAPDLSSLDITA
FT                 YIRNKIQVDDLKVEQFKFSYARKVSSFKIGIPCALFASVCSASFWPEGIFV
FT                 KEYEAKRKKNSSGEMENTIKEPSPAPSTSSSVPKN"
FT   CDS           1439..4315
FT                 /product="CR1-1_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RTIPSALHILFCPKKLASSFLLCYQNTRGLLSKLTKL
FT                 YSDSFSFPYNIMVCTETWLRPDILSSEILPGKYTIYRLDRQSRRGGGVLIA
FT                 VDSTFSSELLTFEEFYDIEFLGIKLSFPGSFVYITCSYIPPSSEFPIYANH
FT                 LSVIQSISKKLSDRDQLIVLGDFNIPSATWSPDENSNILLPLAQHDFIDGL
FT                 LDIALSQVNHVKNSLGRLLDLCFVSNSEGVCLSRTSPLTQPEDPYHPTLEL
FT                 TVDARTELNKKSEKSVKRIRCFRKANFHLLNTFISGYDWSEFYSCTNVAKA
FT                 VNIFYNALNSFFYLCVPLYYPSISNKPPWFNKELSHLKNIKSRLFNKFKMC
FT                 GSQSAFSRYLRARSNFIVLNARCYKSYLTRCRVQFSQDPKQFYNFVNTKRK
FT                 SACYPASLSFENSTANSDQAIADLFAQFFQTTYSVSSRPNPSYSNAIPKSN
FT                 LIFCPRLSESSLLLDLHKVKPVYSPGPDGVPGCVLRYCAETLCRPLYKLFT
FT                 LSLKTSHFPLIWKESFVIPLHKKGNKCNTSNYRGISKLSAIPKLFENTITP
FT                 HLQHLCRSIISPCQHGFIRRRSTTTNLLELTSFVINGFRKNMQTDVVYTDF
FT                 SKAFDSVNHSLLVLKLDLLGFPCDLLTWISSYLSGRTQRVLFKNSISDLIR
FT                 VTSGVPQGSHLGPLLFTLFINDLPLVLTKSRVLMYADDVKLCLQYNEISSS
FT                 SDLQSDLNAFQTWCCENLLDLNSAKCKVMTFFRVNPQYATYTLGGCALSRI
FT                 THVDDLGVLLDPKLKFCDHITSMVNKARGVLGFIKRWSKEFDDPYVTKTLF
FT                 ISLVRPILEYCSAVWSPQYGVHIDRIESVQKNFLLFALRGLNWNASLILPS
FT                 YSSRLLLINLPSLVNRRTMLGTTFIYKLIHGDVESPELLGRISFSVPNRIT
FT                 RNYVPLTLNICRSNFDMHEPFRVLCNDYNRLYHIISTTDSLPSLKXLILSY
FT                 LAQN"
XX
SQ   Sequence 4493 BP; 1198 A; 998 C; 855 G; 1435 T; 7 other;
     cacagagaac ggtcgtgttt ttgttttgcg ctccgaattt tcatttttct tattgaaacc        60
     accggggttt acttaaatct ctttaacgtt tctacacctt taagtgtttt ctaacaactt       120
     tccgttcgct tcgcgagtgc atcgtgatta acttgtgttt agaaaataaa aagtttttat       180
     cataatttaa ttcggtgctg gtttgttgtt attgttttct attgcctccc ttttcagtct       240
     ttctcttcgt cgttgggcgc tgttggaacg gcacgcactc caacggtaat atctctctga       300
     ggtgttttat accggagtta atcggttaat aatcccgctc tctctctctt ttcgtttcta       360
     tctcgtttcg tggtgcctaa catcaaagtt aatcggtgtt tcgctcccgc tctgtcgctc       420
     tccttgctct ctcatcaaaa agttcttgag cgctttcgat ttttttgtcc gctatagtgc       480
     acagtggtcc gtggtcagcg aaaatggctt tctgttcatt aaaaaattgc aagaaagtta       540
     tctcggctgg acagcaaagt attccctgcc atacatgtga taaaatttat cacgcaaagt       600
     gtcttggcta ttctggcctg gttcgcgatg ccatcgataa gaggagtggc ctacgctact       660
     actgcgatga atgcatcgta tacgagaacc aggcaatanc tattaggcgg ctcacaaaaa       720
     gcagtgttac ggaattaatc cggaactgcc gtaaaaatac ggacctgctc gtggcgcttg       780
     aatcgcagct cactagtcgc atgctagctg agcccgattc cccaaagcgc aaaaaagtcg       840
     cggtcggtgg gcattctatg gcaggtgccg tgcaacctgc tgcccgcgat tcgattccag       900
     ctcagctgcc aatcttaggc gccactcaaa tggtactaag atcgggggca aaaagtgatt       960
     cggtacccga agttgctgga accgatgtgg cgccgctagg tacttccgct ctgtccgatc      1020
     aaaataaagt agtggcccca acacctcatg tagacttaac gtccggatta ccggccgata      1080
     ctggtagtac agatacaaat tctgtagtac caaaaagggt cgcatgtgtt gtaccaaaaa      1140
     cggttacttg tgttcgggtg ccccagctaa aacatgtatt tgtttcacgg ctcgccccag      1200
     acctctcatc actggatatt acggcttata tccgtaacaa aatccaagtt gatgatttga      1260
     aggtcgaaca atttaaattt tcttatgcta ggaaagtatc atcatttaag attggtattc      1320
     cttgtgctct ttttgcatct gtgtgttccg ccagtttctg gcccgagggc atatttgtaa      1380
     aagagtacga agctaagaga aaaaagaata gttcagggga aatggaaaat accattaaag      1440
     aaccatcccc agcgccctcc acatcctctt ctgtcccaaa aaactagcct cctcttttct      1500
     tctttgctat cagaatacaa gaggcttact tagtaagctg actaaattgt actcggatag      1560
     tttttcnttc ccatataata ttatggtatg tacagagacc tggttaaggc cggatattct      1620
     tagctccgaa attctcccgg gtaagtacac aatttatagg cttgatcgtc agtccagacg      1680
     gggaggtgga gtcctgattg ctgtcgactc caccttttcg tctgaattac taactttcga      1740
     agaattttat gacatcgaat tcctaggtat aaaattatcg tttcccggta gttttgtata      1800
     tattacttgt tcatatatcc caccatcatc tgagttccct atttacgcaa atcacctttc      1860
     cgttattcag tccatttcca aaaaactgtc agatcgagat cagttaatag tattgggtga      1920
     ttttaatata cctagtgcga catggtcccc tgacgaaaac tctaacattt tacttccttt      1980
     agcgcagcat gactttattg acggcttgct tgacattgcg ctatcccaag tgaaccatgt      2040
     taagaactcc ttaggacgtt tactggactt gtgttttgtt tcaaattcag aaggcgtttg      2100
     cctatcaaga acgtcaccac ttacacaacc ggaagatcct tatcatccaa ctctagagct      2160
     gactgtagac gcaagaacag agctgaataa aaaatccgaa aagtcggtta aacgaatccg      2220
     ctgctttcgt aaggcaaact ttcatctttt aaatactttt atatccggct atgactggtc      2280
     cgaattttat tcatgcacta acgtggctaa ggccgttaat atcttttata atgcattgaa      2340
     ttccttcttt tatctgtgtg ttccgttata ctatccgtca atttcaaata aacctccgtg      2400
     gtttaataaa gagttgtcac acctaaaaaa tattaagtcc agacttttca ataaatttaa      2460
     aatgtgcggt tcacaatctg ccttctctcg gtacctaagg gctcggtcaa attttatcgt      2520
     gcttaacgcc cggtgttata aaagctattt gactcgttgt agggtccaat tttcacaaga      2580
     tccaaaacag ttttataatt ttgttaacac taagcgtaaa tcagcctgtt accctgcatc      2640
     gctatcattc gaaaactcta cggcaaattc tgatcaggca attgccgatc tatttgccca      2700
     gtttttccag acaacatatt ctgtttcatc ccgtccaaat ccgtcttatt caaatgccat      2760
     acccaagtcg aacttgattt tttgtccgag gttaagcgaa agctcccttc ttttggatct      2820
     ccataaagtt aagccngtct attcaccggg tccggacgga gttccaggct gcgtgctnag      2880
     gtactgtgct gaaactctgt gtagacctct gtacaaattg tttaccttgt ctttaaaaac      2940
     atctcatttc ccacttattt ggaaggagtc atttgtcatt ccccttcata agaaaggaaa      3000
     taaatgcaat acaagtaatt acagaggcat atccaaatta tccgccatcc caaagctttt      3060
     cgaaaacact attacacccc atttgcaaca tctttgtaga tcgattatat ctccatgtca      3120
     acatggattt ataaggcgaa gatctacgac gacaaacctc ttggagctaa cgtcttttgt      3180
     aataaatggc tttagaaaga acatgcagac tgacgtagtt tacactgatt ttagtaaagc      3240
     gtttgattca gtaaatcact cgcttcttgt attaaagcta gacttattag ggtttccatg      3300
     tgatcttcta acatggatct caagttatct gagtggtagg actcaacgag tcctctttaa      3360
     aaactcgatc tctgatttga tccgagttac ttcaggcgtc ccacaaggaa gccaccttgg      3420
     cccacttctt tttactttat ttataaacga tctccctcta gtcttgacaa agtcgcgtgt      3480
     ccttatgtac gcagatgacg ttaagttatg cctgcaatat aacgaaattt ctagcagttc      3540
     agacttacaa tctgacctaa acgcttttca aacatggtgt tgtgaaaatc ttttggattt      3600
     aaatagcgct aagtgcaaag taatgacatt ttttcgggtg aacccacaat atgcaacgta      3660
     tacgctgggt ggttgcgcgt tgtctagaat tacgcatgtt gatgaccttg gcgtcctcct      3720
     tgacccnaaa cttaagtttt gtgaccatat tacttctatg gtgaataaag ccaggggagt      3780
     acttggattt attaaaaggt ggtcaaagga attcgatgat ccctatgtta caaagactct      3840
     gttcatttca ctagtccgtc caatcctgga gtactgttcn gcagtttgga gtcctcagta      3900
     tggtgtacat atagaccgga tagagtctgt gcaaaagaac tttttattat ttgctctacg      3960
     gggccttaac tggaatgcaa gccttatttt accatcctac tctagtagac ttctcctaat      4020
     taatctacca tccttagtaa accgtagaac gatgcttggc acaactttta tctataaact      4080
     tattcacggg gatgtggaga gtcccgagtt actgggtcgc ataagcttct ccgtgcctaa      4140
     tagaattacc aggaactatg ttcctcttac attaaatatt tgtagatcta actttgatat      4200
     gcatgaaccg tttagagtac tgtgtaacga ctataataga ctataccaca ttatttctac      4260
     taccgactct ttgccaagcc taaaancatt aattttatct tacttagcac aaaattagta      4320
     ttagtattag tctcgtacgt atttctaatc ttagtctgtc cgcttctaca ttgtgctttt      4380
     aacttctcgc gatctcgttt ttacgcctat taggctccgc gcgtaacaag cactgcttgg      4440
     tgtcgtaagg gccacttgtt tgcgctgatc atagtgcatc aacgtccgaa aaa             4493
//
ID   CR1-1_DSer  repbase;    DNA;    INV; 4454 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4454
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2057-2057 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           448..1488
FT                 /product="CR1-1_DSer_1p"
FT                 /translation="MSTCCATDCPHSRKITSRQATVYCWLCTNAAHPGCAD
FT                 LGHVGPRIADRIRDHAGLDWTCPSCLHIKSEMRIFMRQTHLEFQSLAAGFK
FT                 DLASRFQKTESFFKSMKLISVTPNNNTGHIPNNFLPVADPASPLLLFSPRN
FT                 PPNGHTTSVADDSAADVAASGQAANASPCPGLADTVASPTMQPVNMDLAST
FT                 SHAAAANKALPASNHLKNAHSAIGPAVIIASPLTSSPRVQLSTISGVAPRS
FT                 PAPLAGVAPKRLVFVSRLNPDATAKDVAIHLSNKLNVPLTEFSVSKFNFKQ
FT                 KRDISSFKIALSDTLYSKVLDASVWPVHAIVHEYLYKSNPRAGVPLTPSTR
FT                 PPKN"
FT   CDS           1395..4337
FT                 /product="CR1-1_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MARTCYCSRISLQEQPTGWSAPDSLNQASKKLINSFS
FT                 LHYQNARSLLGKLSKLHANSASFDANVISFTETWLNSSVSDCELFAGNYIV
FT                 YRRDRQMRTGGGVLIAVKSDLISELVPTTYSDNILEFVAVRVQVHDYSLYV
FT                 SCSYIPPRSDATIYLQHLSLIQGIHSTLGVNDHLIAMGDFNLPSISWLPSP
FT                 DTNFLVPTAAHDLVQGLIDLSLGQLNYVKNCSDKILDLIFASEFANALVSR
FT                 IDPISYPEDAYHPTLEIILEASSPLLPSPEVEPTTFRCFRRANFNGINSYL
FT                 SLADWTFLDSLDDPNNMVMRFYDILYSAFDIYVPSFPSPDASYKPPWFSRR
FT                 LSYLKNLKSRLHKKFTRTGSQVDLSRYLTARTKFLAHNSVCYRNHLNRCRD
FT                 EFQANPKQFYAFVNSKRRSQNFPSCLHLNTESASNEPDIANLFAKFFQSTY
FT                 SSIGYNTTSSYPYSLPLSNSIFMPAICEDDVFQNLKTLKPSFSSGPDRVPS
FT                 CVLRHCAGALCRPLSILFQMSLRLSFFPESWKESFIIPLHKKGSKSNIENY
FT                 RGIAKLSAIPKLFELLITAQLQHQCRSIMSPSQHGFMKNRSTSTNLLEFCA
FT                 VIRNGFKLNFQTDVIFTDFSKAFDSVNHLLLLRKLTLLGFPALLTNWIATY
FT                 LSNRSQRVAFKRSLSNRVFVSSGVPQGSHLGPLLFGLFINDLPEVVLHSSV
FT                 MMYADDVKLCLPLTNSHSHNLLQTDLNNMQSWCINNLLFLNNSKCKFMSFY
FT                 RKNCLLANYSIGACDLERIYTVTDLGVLFNHTLNFNDHIGLIISKARGVFA
FT                 FVKRWSKEFDDPYTSKLLYISLVRPILEYCSCVWSPQYAKYQDLIESVQKQ
FT                 FLLFALRGLHWDPHRHLPSYADRLRLLSLPTLKDRRTCHGVIFILKLLNGQ
FT                 ICSTYLLSKLRLAVPVRPSRHFRPIALNVCKTNNDEHDPFRVLCSMYNKYY
FT                 FLLHVELSYELNVQNLLTYLSLPLPT"
XX
SQ   Sequence 4454 BP; 1093 A; 1128 C; 800 G; 1433 T; 0 other;
     aatcgcctac gagtcggacg tgtttttctc tcgctctacc ctcgcttaaa gttttcaccg        60
     tgaatattta ttctaaaaag cccaaatttt tggcaaacga tcagtgtttt ggctattctt       120
     tatttaccca caatatctga atcatctcat ttaaagtcag tgactttaat ttccgaaaac       180
     atcatcggcg aaaaatattc tttcgccctt gttttctgcg ccgtgtgttt atcgcttatt       240
     gctgcgctgg tctcagtgtt gttgttgctg caagtgatct gcaagccgcg aacaatcaca       300
     caatctcata ctttcttgag ctgagataaa agcttacatc tttctctcgc actgtttttg       360
     ttttgatcgg ttccttcgcc actcaagtca atttcctttt tattacttgc gcgttgcttc       420
     atacgactta ttattatttt gaacataatg tcaacttgct gtgccacgga ttgcccacat       480
     agccgcaaaa ttacttcgcg gcaggccacc gtttattgtt ggctgtgcac taatgccgca       540
     caccctggct gcgccgatct tgggcatgtt ggcccgcgca tcgccgaccg catacgagat       600
     cacgctggct tggattggac gtgcccgagc tgccttcata ttaaatccga aatgcggatt       660
     tttatgagac aaactcattt agagtttcaa tctttggcgg ctgggttcaa ggatttggca       720
     agccgtttcc aaaaaacgga atcttttttt aaatccatga aactgataag tgtcacgcca       780
     aataacaaca cgggacacat tcctaataat tttttgcctg ttgcagaccc tgcgagccct       840
     cttttgctgt ttagcccacg caacccacca aatggtcata ccacgagtgt tgctgatgac       900
     tcagccgccg atgtcgccgc gtcgggtcaa gcagcgaatg cttccccttg tcctggacta       960
     gctgataccg tcgcatctcc aaccatgcag ccagtcaaca tggatctggc gtctacgtcg      1020
     catgctgccg cagcaaacaa agccctgccg gcctcaaacc atctgaagaa tgctcactct      1080
     gcgattggcc cggcggtcat catcgcatct cctctgactt ctagtcccag agttcaactt      1140
     tcaactatct ctggtgtcgc cccaaggagt ccggcgcctc ttgccggcgt tgccccaaaa      1200
     aggctagttt ttgtctctcg cctcaatcca gatgcaaccg cgaaagatgt cgcgatccac      1260
     ttgagcaaca aattgaatgt tcctttaact gaattctctg tctcaaagtt caattttaag      1320
     cagaaacgag atatttcctc ttttaaaatt gcactttccg acacgttata tagtaaggtt      1380
     cttgatgctt ccgtatggcc cgtacatgct attgttcacg aatatcttta caagagcaac      1440
     ccacgggctg gagtgcccct gactccctca accaggcctc caaaaaacta attaactcgt      1500
     tttctttgca ttatcagaat gctcgtagtt tgttagggaa acttagcaag ctgcacgcta      1560
     atagtgcctc cttcgatgcc aacgttattt ccttcaccga aacgtggctt aactcctctg      1620
     tttccgattg cgaattattc gctggcaact atattgtcta taggcgtgac cgtcaaatgc      1680
     gtactggcgg cggcgttctt attgccgtga aatctgacct tatttctgaa ctggttccca      1740
     caacctactc agataatatt ttggagtttg ttgcggttcg tgttcaagtt cacgactatt      1800
     ctctctatgt atcatgctct tacatcccac cccggtctga cgctactatt tatctacagc      1860
     acctgtcctt aatccaggga attcactcaa ctctgggtgt taatgaccat ttaatagcta      1920
     tgggcgattt taaccttcct tccatatctt ggttgccatc accagacacc aattttctgg      1980
     ttcccactgc agctcatgac ttagtccaag gtcttattga cctttctttg ggccaattga      2040
     actacgtcaa gaactgtagt gataaaatct tggaccttat ctttgcgtcc gagttcgcca      2100
     acgcccttgt ctcaagaatt gaccctatct cctatcctga agatgcttat catcccactc      2160
     tggagataat tcttgaagcg tcgtctcctt tacttcctag tccagaagtt gaaccgacaa      2220
     cttttcgctg cttccgcaga gctaatttca atggcattaa ctcctattta tccctagctg      2280
     attggacttt tttggattct ctagacgacc ccaataacat ggttatgcgc ttttacgata      2340
     ttttatattc tgcctttgac atttatgtcc catcctttcc ttcacctgac gcgtcttaca      2400
     agcccccatg gttttctcgt cgactatctt accttaaaaa cttgaagtcg aggcttcaca      2460
     agaaattcac taggactggg tcacaggtgg acctttctag atacttgaca gctcgcacaa      2520
     aattcttagc ccacaattct gtatgctaca gaaaccacct aaatcggtgt agggatgagt      2580
     tccaggctaa tcctaagcaa ttttacgcgt ttgtaaattc aaaacgaaga tcccaaaatt      2640
     ttccttcttg tcttcatctc aatactgagt ccgcgtctaa cgagcctgat atagcgaacc      2700
     tgttcgcaaa atttttccag tctacgtact catccattgg ctacaataca acctcttcgt      2760
     atccttattc tcttccactt tctaattcca ttttcatgcc cgctatttgc gaagacgatg      2820
     tttttcagaa cctcaagaca ctaaaacctt ccttttcttc tggtcctgat cgcgttccta      2880
     gctgtgtttt gagacactgt gctggtgctt tatgccgacc tctgtcaatt ctttttcaga      2940
     tgtcgcttcg tctttcattt ttcccagaaa gttggaagga atctttcatc attcctctcc      3000
     ataaaaaggg cagtaaatct aatatcgaaa actacagagg tattgcaaag cttagtgcta      3060
     ttccaaagtt gttcgaactt ctgattactg cgcagctgca gcaccaatgt cggtcaatta      3120
     tgtccccctc tcagcacggc tttatgaaaa acagatcaac gtctactaac cttctagaat      3180
     tttgtgctgt cattagaaac ggtttcaaat taaattttca aacagacgtt atcttcaccg      3240
     atttcagcaa ggcttttgac tcggtaaatc acctactatt acttagaaaa cttacgcttc      3300
     ttggtttccc tgctttattg actaactgga ttgcaacata tttatccaac cgtagtcaac      3360
     gtgttgcctt taagcgctct ctctcaaacc gggtttttgt ttcttctggc gttcctcaag      3420
     ggagccacct tgggccactt ctgttcggcc tctttatcaa tgacttgcct gaagtggttc      3480
     tacactcaag tgtgatgatg tacgcagatg acgtcaaact ttgtttgcca ttgacgaatt      3540
     ctcattcaca caaccttttg caaactgacc ttaataacat gcaatcctgg tgcattaata      3600
     atctcctctt tctcaacaac tccaaatgca aatttatgtc attttaccgg aagaattgcc      3660
     tgctcgccaa ttactctata ggtgcgtgcg atcttgaacg catttatacg gtaacagatc      3720
     tcggagtcct atttaaccac acccttaatt ttaatgacca cattggtcta attattagta      3780
     aagctcgagg ggttttcgcc tttgttaagc gatggtcaaa ggagtttgat gatccttaca      3840
     catcaaaact tctttatatc tcactcgttc gccctattct tgaatattgt tcgtgtgtgt      3900
     ggtcacctca atatgcgaag tatcaagacc ttattgaatc tgttcagaaa caattccttt      3960
     tgttcgctct acgtggatta cactgggatc cacatcgtca tcttccatcg tatgccgaca      4020
     ggctaagact tttaagcctt cccaccctaa aggatcgtcg aacctgccac ggcgttatct      4080
     ttatacttaa gcttctcaat ggtcaaattt gctccacgta tttattaagc aaattacgtc      4140
     tcgcagtccc tgtaaggcct tctcgtcatt ttcgtccaat agcccttaac gtttgtaaga      4200
     cgaataatga cgagcatgat cctttccgtg ttctatgttc catgtacaat aagtactatt      4260
     ttctgttaca tgttgaattg tcctacgagt taaatgtcca aaatctgtta acctacctat      4320
     ccttacctct gccaacctga tgtgagtcgg agcacatcgt taaaaaacac tcccttttgt      4380
     tgtgcagagg taagggtaca atataatttt aagaatggca gttcattgct attttctttt      4440
     tataaataaa taaa                                                        4454
//
ID   CR1-1_DSuz  repbase;    DNA;    INV; 4963 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4963
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 599-599 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..939
FT                 /product="CR1-1_DSuz_1p"
FT                 /note="PHD finger."
FT                 /translation="MLLPRCPECKTDVTLAQLRASDAVRCSSLCRRAYHTS
FT                 CVALPDDVLKLLLNPNILWQCDSCVVANDSHSKIDEFDEKLKALERLYQGL
FT                 QNKFMEAFPPKDDALHQNVNPKPRLPRPTNVAAAPLSYAAAAATASAVVDP
FT                 SNHALDMERGNFIQVRNKRRRNNNKPNKHVVGVAPNAEDLHVLPTKKFLHV
FT                 GKFATDTDPNAVLKYVSTKLKVDASSLTCAKLVKKDVDVQTLKFVNFKLGI
FT                 PDQLYDIVFKNDFWPNSVKVKRFIHRERATVVGDGILSNLPEPGPTSSSSQ
FT                 PSKNP"
FT   CDS           888..4886
FT                 /product="CR1-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FAGAWTNFIIKSAVKKPLVFDATGVDTFAGHRLQAFP
FT                 HLSESFSQQHRQLLAFLTALSSSSDSLLTHHQQHQPELLLSTLCDIRRPPG
FT                 LNIGTLLGVALTSLSVALLMLHQQHQPELLLFALRDVRSPPGSNIGALLGV
FT                 ALSSSCASLPLHRQQHQLELLLSAVRDIRRPPGSNIGALLGVALSSSCASL
FT                 PLHRQQHQLELLLSAVRDIRRPPGSNIGALLGVALSSSCVSLRKYLENRVD
FT                 SYSSSPNSHALSVSTFLTFDFLQQLSQSALSEGALWRCFRHQQQQWTAAAV
FT                 ERSRSLLPGVDSPACSYILNANIDCPPNIWSADHQPIRIRTTTLLKVLTNN
FT                 FINYDKIPARPLTDSGHDAGPVIDSMTMDDRICANNTNFNIYFQNIGGMRT
FT                 KAQSLFQATSHGDHDVIIFVETWLNMDFFDNEFFDTNLYHVFRKDRDSVKT
FT                 RCSRGGGVLIAVRRELRCIAICLQNEDSLLDQLCVSLAGPMETIFLTVSYI
FT                 PPSSSFDLYKAHVDNIAHLYQELEDGQYICVLGDFNLSSLVWAHDLESSAM
FT                 VPSNLHLPHEILVIDELLSMGLVQINHVFNNLNKLLDLIFVHPDLCLTLCC
FT                 SDNPLAACDAHHKPLLILITCYIFSPNNSRLPLTYINSSSLDSIRSDISNI
FT                 RWAEVLSHADVNTTYEVFISFLSTIIGRYAKTRVQSSYRLPWYTQGLKKYK
FT                 NLRNKFYKRYIESGEAADFDRYKQHKREFEFLNKFLYSQYIADIECKLITN
FT                 PKSFWHFINSKRTTSYFPSHMSYESLSASSDIGVANLFAKYFVSNFEPSSL
FT                 WNDDDSLGAIATMLNIGCLDVTDLDCHMAAESFNDSGKLDCDGLSPFILKN
FT                 CIGVLCEPLKMIFNKSLSTGVFAHRWKLATVSPIFKSGHKNIVSNYRPIAK
FT                 LSNVSKMFERIVAKQLTFLAGRIISPNQHGFMPGRSTTTNLATFNLFCIHS
FT                 FISHHQVDVVYTDFAKAFDKVSHNALLAKLQKLGFHSSILNWFKSYLDGRI
FT                 YRVECNGVFSNPYVATSGLPQGSALGPFLFIIFINDLSYCITNSEFLLFAD
FT                 DLKIFRSVNSISDSELLQNDLVKVGNWCSRNKLPLNVSKCFYVRYSKRLIN
FT                 VLSSYSISSHVLSLRNESLDLGVMFDTKFTFMDHINYIIPKAYAMYGFVKR
FT                 NSTQFKDPYTKLSLFSSFIRSRLEYASFVWSPTGTTHINRIERVQKKFLSF
FT                 ALLSLNFNDPVPSYSAKCRLVHLSSLQDRRTTSALVFICDLLSSKIDCPAL
FT                 LSSIGFSVPGRSLRSFEPFFIPAYRANYAFNEPLCRALFYWNKLPSHMRLD
FT                 PCSPRELIKKTLYNYLSSLSI"
XX
SQ   Sequence 4963 BP; 1282 A; 1148 C; 955 G; 1578 T; 0 other;
     agtcgtcatc tagctttctt tgcgtccaga cgtgcttaaa ttctcgctat gttacttccc        60
     cgctgtcccg agtgcaaaac cgatgttaca ttggcccagc ttcgcgcttc ggatgctgtt       120
     cgctgctctt ctttgtgccg tcgcgcctat catacttctt gcgtagccct accggatgat       180
     gtgctcaaac tcttattaaa tccaaatata ctatggcaat gtgatagctg tgtggttgcg       240
     aatgattcgc attctaaaat agatgaattc gatgaaaaat tgaaagccct ggagcgctta       300
     tatcagggcc ttcaaaataa attcatggag gcgttccccc ctaaagatga tgcattgcat       360
     cagaatgtaa atccgaaacc tcgtctaccg aggcctacca acgtagctgc agctcccctg       420
     tcatatgcgg ctgctgctgc tacggcttcc gcggtcgttg acccttctaa tcatgctctg       480
     gatatggaga gaggaaattt catacaagta cgaaataaga ggagaaggaa caacaacaag       540
     cccaataaac atgttgttgg agtggctcct aatgctgaag accttcatgt tttgccgacc       600
     aagaaatttt tgcatgtcgg aaagtttgca actgatacag atccgaatgc tgttttaaaa       660
     tatgtgtcca ccaagcttaa ggtggatgct agttctctca cttgtgcaaa gcttgtaaaa       720
     aaagatgtcg acgttcaaac tttaaaattt gtaaatttca agcttggtat ccctgatcag       780
     ctttacgata tagtcttcaa aaacgatttc tggccgaact cagttaaggt caaaagattt       840
     attcatagag agcgggccac tgtggtaggg gatggaattt tatctaattt gccggagcct       900
     ggaccaactt catcatcaag tcagccgtca aaaaacccct agtgttcgac gccactggcg       960
     tcgatacttt tgcgggacat cgtctgcaag cctttcctca tttgtcggag tcgttttcgc      1020
     aacaacatcg gcagctgctt gcgtttctca ctgcgctctc ttcatcttct gactctctcc      1080
     taacgcacca tcaacaacat cagccggagc ttttgttgtc cactttgtgc gacattcgcc      1140
     gtccgcctgg cttgaatatc ggcacgctcc tcggagttgc gctcacatca ctttccgtgg      1200
     ctctcctgat gcttcatcaa caacatcagc cggagctttt gttgtttgct ttgcgagacg      1260
     ttcgcagtcc acctggttct aatatcggcg cgctcctcgg agttgcgctc tcatcatctt      1320
     gcgcctctct cccgttgcac cgtcaacaac atcagctgga gcttttgttg tccgctgtgc      1380
     gcgacattcg ccgtccgcct ggctctaata tcggcgcgct cctcggagtt gcgctctcat      1440
     catcttgcgc ctctctcccg ttgcaccgtc aacaacatca gctggagctt ttgttgtccg      1500
     ctgtgcgcga cattcgccgt ccgcctggct ctaatatcgg cgcgctcctc ggagttgcgc      1560
     tctcatcatc ttgcgtctct ctccggaagt acctagaaaa tcgggtggat tcttactctt      1620
     catcgcctaa tagtcatgcg ctctccgtct ctacctttct gacgttcgac tttctacaac      1680
     aactctctca gagtgctctc tctgaaggtg ctctttggag atgctttcgc catcaacaac      1740
     aacaatggac tgcggctgct gtagaacgtt ctcgctcatt attaccagga gtggattcac      1800
     ctgcgtgcag ttatatcttg aatgctaata ttgactgccc acctaatatt tggagcgccg      1860
     atcaccagcc tattcgtatc cgtaccacta ctttactgaa ggttcttaca aataatttta      1920
     ttaattatga taaaatccca gcgaggcctc ttacggattc gggccatgat gctggaccag      1980
     ttattgatag catgaccatg gatgaccgga tatgcgctaa caatacaaat ttcaatattt      2040
     attttcaaaa tatcggtggt atgcgtacga aagctcaatc ccttttccag gcaacgtctc      2100
     atggtgatca tgacgtcatc atttttgttg aaacctggct caacatggat ttcttcgata      2160
     atgaattctt cgatacaaat ctttatcatg tgttccgtaa ggatcgagat tccgttaaaa      2220
     cacgatgctc cagaggtggc ggagttttaa ttgctgtgcg gcgtgagctg cgttgcattg      2280
     ctatttgtct ccagaacgag gattctctgc tcgaccaact ctgtgtatct ctcgctggtc      2340
     cgatggaaac aattttcctg acagtatcat acataccccc aagcagcagt tttgatttat      2400
     ataaagcgca tgttgacaac attgcccacc tataccagga gctggaagat ggccaatata      2460
     tatgtgtttt gggcgacttc aacctatctt cgctcgtgtg ggctcatgat cttgagtctt      2520
     cagcaatggt tcccagtaat ctgcatcttc ctcatgaaat cttagtcatc gatgagcttc      2580
     ttagtatggg attagtccag attaaccatg tttttaataa cttaaataag cttctagatc      2640
     taatttttgt acaccctgat ttatgcctta ctctatgctg cagcgataat ccgctagccg      2700
     cgtgtgatgc tcatcacaag cccctattaa tcttaattac ttgttatatt ttctctccaa      2760
     ataattctcg cttgcctctt acctatatta attctagcag tttagattct atccgtagtg      2820
     atatttctaa tatcagatgg gcggaagtcc tctcgcatgc ggatgtgaat acaacctatg      2880
     aagtttttat atcttttctc tctactatta taggcagata tgctaaaact agagttcaaa      2940
     gttcttatag actaccatgg tacacacaag gactaaaaaa atacaaaaat ctccgaaata      3000
     aattctataa gcgctacata gaaagcggtg aagctgccga ctttgatcgg tacaaacaac      3060
     ataagcgtga gtttgagttc ctcaataaat tcttatacag ccaatatatt gctgatatag      3120
     agtgtaaact aattaccaat cctaagtcat tctggcactt tatcaattct aaacgtacaa      3180
     cctcctactt tccttcccat atgtcatatg aaagtctttc agcttcttct gatattgggg      3240
     tcgctaatct atttgctaag tactttgtat ctaactttga accgagctcg ctgtggaatg      3300
     acgatgattc actcggtgcc attgccacga tgctaaatat tgggtgctta gatgttactg      3360
     atttggactg tcatatggcg gctgagagtt ttaacgactc aggaaaatta gactgcgatg      3420
     gcctttctcc atttattttg aaaaactgta taggtgttct ttgtgagccc ctaaaaatga      3480
     tcttcaacaa gtctctttcc actggcgtat ttgcgcatag atggaaactt gccacagttt      3540
     ctcctatatt caagtctggt cacaaaaaca ttgtttcaaa ttataggcca attgcaaagc      3600
     taagtaatgt ttcaaaaatg tttgaacgaa ttgtagctaa gcagctaact tttcttgctg      3660
     gtcggatcat cagtcctaac caacatggtt ttatgcctgg aaggtcaact accactaact      3720
     tagctacgtt taatcttttt tgcatccact cgtttatcag tcatcatcaa gttgatgtag      3780
     tctacaccga cttcgccaaa gcatttgaca aagtctccca taatgcttta ttggcaaaat      3840
     tgcagaaatt gggatttcat tcatcaatat taaattggtt taaatcttat ttagatgggc      3900
     ggatttatag agtagagtgc aatggtgttt tctcaaaccc gtatgtggct acttctggcc      3960
     ttcctcaggg aagtgctttg ggtccgtttc tattcatcat cttcattaat gatttaagct      4020
     attgcataac aaattctgaa ttcctgttgt ttgcggacga tcttaaaata tttaggtctg      4080
     tgaattcaat ctccgatagt gaacttcttc aaaatgacct agtaaaagtg ggaaattggt      4140
     gttctcgtaa taagttgcct ctgaacgtgt caaaatgttt ctacgttagg tacagcaaac      4200
     gattaattaa tgtccttagc tcttattcca ttagttccca tgttctttcc ttaagaaatg      4260
     aatcactgga cctaggagtt atgtttgata ccaaatttac tttcatggat cacataaact      4320
     acataattcc aaaggcatac gctatgtatg gttttgtaaa acgaaattcc acgcaattta      4380
     aagatccgta cacgaaacta agcctatttt cttcgttcat taggtccaga ttggaatatg      4440
     cttcgtttgt ctggagtccg actggaacta cacacatcaa tcgtattgag cgtgttcaaa      4500
     aaaaattcct atcttttgcc cttctttctc taaactttaa tgacccggtt ccctcttact      4560
     ctgcgaaatg tcgtcttgtg cacctttctt ccctacaaga tcgtagaaca actagcgcac      4620
     tagtttttat ttgtgacctg ctgtcctcca aaatagactg ccctgcattg ctgagtagca      4680
     taggcttttc cgtacctggt aggtctttaa ggtcatttga accctttttt attccggcat      4740
     atagagctaa ctatgctttt aatgagcctc tgtgtagagc cttgttctac tggaacaaac      4800
     ttccatctca catgcggctg gacccatgct ctcctaggga attaattaag aaaacccttt      4860
     acaattacct ttcgtccctt agtatttagt ttagtaatat acaagtagcc agttaaggta      4920
     ccaactgttg gcgaaataaa taaataaata aataaataaa tat                        4963
//
ID   CR1-1_DT    repbase;    DNA;    INV; 4534 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.08, Created)
DT   18-OCT-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon from the Drosophila takahashii
DE   genome: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4534
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1607-1607 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           610..1140
FT                 /product="CR1-1_DT_1p"
FT                 /translation="MALICTKKNCSLPTSXXDPFVXCWLCEAMMHAKCAGF
FT                 TGRVKDFIEMRIGLMWVCEPCRELAVEMSSFMRQTRDGLCNLSRVFKQLND
FT                 GFNSVCEQFNNKKLLLTESPKRKKASSTTVNASVEPALNPNSVAAAVSGDT
FT                 GVSEPPVPMDTASSGGVVPVSXATCIRGSRRRPYPEVQ"
FT   CDS           1738..4371
FT                 /product="CR1-1_DT_2p"
FT                 /translation="GGGVLIAVTSSLXSERLXXHVPNDIEFVSVKVSXQSS
FT                 SIFVTCSYIPPGSDLIIYEHHLSAIKSVLSFLSNRDLLIVLGDFNLPNISW
FT                 SLPTDSLVATPLSAHDFVDGLLELSLQQVSFIRNSLNRQLDLVFVLDPHEV
FT                 TVSRIDALVVPEDRYHPTLELTIGLPCTDTLSPLVPQTKTRCFRKCDYNKL
FT                 NYMISQYNWTDLYNCVDIESAIELFYSVLNTFFDECVPDRLPPKLNRPPWF
FT                 NNALQRLKNLKSNTYKKYKKSGKPSDFSKYVVARSDFNVLNSHCYSMYLNR
FT                 CKFEFSNDPKQFYNFVNAKRKSSALPSSVRLNSKEASSDSEIADLFAXFFQ
FT                 TTYSSAAWSXSXYPNPLNRANCIFTPVITESSLLKDLASTTPTYSPGPDGL
FT                 PGCVLKFCASTICKPILKLFXLSISSSVFPTIWKDSFIIPLHKKGAKADAQ
FT                 NYRGISKLSAIPKAFERIITSHLQHLCSSLISPCQHGFVKRRSTTTNLLEL
FT                 SSIVINGFNNKMQTDVIYTDFSKAFDSVNHSLLLFKLDLLGFPCNLLTWIS
FT                 SYLNGRTQRVIFKSAVSKTIHVTSGVPQGSHLGPLLFTLFINDLPSIVTHS
FT                 RVLMYADDVKLCLTYNNIESGFGLQSDIDRFQVWCEYNLLNLNCLKCNVMT
FT                 FYRGTPTFISYSLQNXPLDRIYSVNDLGVLLDPKLKFDCHIMXTVNKAMSV
FT                 FGFIKRWSKEFDDPYTTRLLFTSLVRPILEYCSSVWSPQYQVHIDRXESVQ
FT                 KKFLLFALRSLNWDQNVRLPSYQSRLLLLNLPTLENRRIMLGTIFMHNLIR
FT                 GDIDSVELVNRLTFNVPVRLTRNYYPLNLPRCTSNFTLHEPFRVLCXNYND
FT                 LYHLICTSTSIPVLKTKILXHLLQS"
XX
SQ   Sequence 4534 BP; 1152 A; 960 C; 825 G; 1547 T; 50 other;
     tattcgattt agcgtcgctt gtgaacggtt gtgtttacca ttgtgctctg agtttttgnt        60
     ttatnttgtg attntttccg caagtgtttt gtgtttatct actaacaaag tttagcctaa       120
     caatcgcgtt agtgntttnn atagatctcc cagattaacg ggtacgtggt tntagttatt       180
     ttaacaattt ccatttgatt tgtttaatat cttggctttg ttagtgtaat ttgcactctc       240
     taaatttgct cttgtattct ctctcttttn ctctctctct cttccgctct attataactg       300
     taatttcgct ctctctgaac ctgccgaatt tcttgtagac cttttctcat agtctctctc       360
     tctctcgctt tacattgtaa ctgttcgtgc gtttagttgt tggtgcccca caagccacgc       420
     tcagtcgatc gaacactttt tctctcgcgc tctcttgctc tcgacttaat tcgcgatctc       480
     gcgctcttat acttttgtgt tttgtgtttt ttgcggtttt ggaatttgat cccagtgcca       540
     aatttactcg aggtattttt ttatttcaca ttttattttc tttatcttcg aataattatt       600
     tttcctataa tggctcttat ctgtactaag aaaaattgta gtcttccgac gtcanccaan       660
     gacccttttg tttnctgttg gctctgcgaa gcgatgatgc acgctaaatg tgcaggattt       720
     actggcagag ttaaagactt cattgaaatg cggatcggtc tcatgtgggt atgtgagccc       780
     tgcagggaat tggcagttga gatgagcagc tttatgaggc agactcgaga cggcctatgt       840
     aatctttcac gagtttttaa acagctcaat gacggattca attccgtttg cgaacaattt       900
     aataataaaa aattattatt aaccgagtcg cccaaacgca aaaaagctag ctcaacgacg       960
     gtaaatgcga gcgtngaacc cgccttaaat ccgaactcgg tagctgctgc agtttctggt      1020
     gacacagggg taagcgaacc gcctgtgcca atggatactg ctagttccgg aggtgtagtc      1080
     cctgtntctg nagccacctg tatccgcgga agtcggcgcc gaccgtaccc agaggtacag      1140
     taggcgccgc ttctggctct cagccgagtg aggttcagac tgctgctggg gggcgtaaga      1200
     aactctcagt tgttccacat aggaagcaac tgtttgtttc nagatttacc ccngatacca      1260
     catctgagga tgttttggaa ttcatncgtg aaaaattccc atccgaggac attgcggttg      1320
     aacaatttcg attttcgtac gcccgtagga tatcntcttt caaaatnttt gctccgcctg      1380
     atgtgtttaa ngtactgctt tctgaaagct tttggcttaa tgatgatttg gtnataaaag      1440
     aatttgttcc caataaaccg agaacaaata acaggcctcc cgcggtgccn aanaatcggc      1500
     tttccactgt gcctaataat aggccttcca cggtgccaaa aaactgaaag gtttattntt      1560
     ggcttaccaa aatgttagag gactnaacat gaagctacca aagctttatg ctgactcctc      1620
     tgcatttacn gacgatatct tggcttttac ggaaacttgg ctgaaaccag agatancnga      1680
     ctctgaagtt ttgtcaatga actttaacac ctacaggacc gatcgcttcc cgcgtagggg      1740
     ggcggcgttc tgattgccgt tacctctagc ttaanntcgg agagacttna cnctcatgtc      1800
     cctaacgaca ttgaatttgt tagtgtcaaa gtttccnttc aatcctcgtc tatttttgtn      1860
     acctgctctt atattcctcc tggctctgac ttaataattt atgagcacca tctgtctgct      1920
     attaaatctg ttctatcctt tctttccaac agagaccttt tgattgtttt gggtgacttt      1980
     aatctcccna atatctcttg gtctcttccc actgactcac ttgtcgctac tcctttatcc      2040
     gcccatgatt ttgtggatgg ccttttagaa ttatcgttac agcaagtaag ctttatacga      2100
     aattcattaa atagacaatt agatcttgtg tttgttttag atccgcatga agtcacggta      2160
     tctagaattg acgcacttgt tgtacctgaa gaccgatatc atccaacttt ggaattgaca      2220
     attggcctcc cctgtactga taccctttct cctttagttc ctcaaactaa aacgagatgc      2280
     tttcgnaaat gtgactataa taaactaaac tacatgattt cncaatataa ttggactgat      2340
     ttgtacaatt gcgtggatat cgaaagtgca attgaacttt tctatagcgt tttaaacact      2400
     ttttttgacg aatgcgttcc tgacaggctt cctccgaagc taaacaggcc tccttggttt      2460
     aacaatgcgc ttcaaagact taaaaatctt aaatccaaca cttataaaaa gtataaaaaa      2520
     tcgggtaagc catctgattt ttcgaaatat gtggtggctc gttcagattt taatgttctc      2580
     aacagtcatt gctattccat gtatttaaat cgatgtaaat tcgaattttc aaatgatccg      2640
     aagcagtttt ataacttcgt taacgccaag cgtaagtctt cggcattgcc ttcatcggta      2700
     cgtttaaact caaaagaggc atcgtcggat tctgaaattg cggatttatt cgccganttt      2760
     ttccaaacta cttatagttc ggctgcttgg tcaaantcta nctaccctaa ccccttaaat      2820
     agggcaaatt gtatttttac ccctgtaatt accgaaagtt ctctcttaaa ggatttagca      2880
     tcaacaacgc caacgtattc tcccggtcct gatggactcc ctgggtgtgt gcttaagttt      2940
     tgtgcntcaa ccatttgtaa accgattctt aaactttttc anttgtctat ttcatcatca      3000
     gtttttccaa ctatctggaa ggactctttc attattccac tccacaaaaa gggtgcgaag      3060
     gcggatgccc agaattatag aggtatttct aaattgtcgg caattccaaa agcctttgaa      3120
     cgtattatca cttctcattt gcaacattta tgttcctcgc taatatcacc gtgtcagcac      3180
     ggttttgtta agcgaagatc gactaccacc aacctacttg aattgtcatc tattgtaata      3240
     aatggattta acaataaaat gcagaccgac gttatatata cagatttcag taaagccttt      3300
     gactccgtta accactctct tcttttattc aaattagatt tgcttgggtt tccatgtaat      3360
     ctattaactt ggatttcaag ttacttgaat ggtaggactc agagggttat atttaagagc      3420
     gctgtttcta aaacgatcca cgtgacatct ggagtncctc agggtagtca tttgggccct      3480
     ttgctgttta ctttgtttat taacgatctt ccctctatcg taacacattc tcgtgtacta      3540
     atgtacgctg acgatgttaa gctttgtttg acatataata atatagagtc cggtttcggc      3600
     ttacaatcag acattgatcg ttttcaagta tggtgtgagt ataacctctt aaatttgaac      3660
     tgcctnaaat gcaacgtaat gaccttttat aggggcactc ctacgtttat aagttattcg      3720
     cttcagaatn cgccactcga ccgtatatat tcagtnaacg atttaggcgt tcttctggac      3780
     ccgaagctta aatttgactg ccacataatg ncgactgtca ataaagctat gagtgttttt      3840
     gggtttataa agcgttggtc aaaagaattt gatgaccctt atacaaccag attattattt      3900
     acctcccttg tccgtcctat tttggaatat tgttcttcgg tttggagccc acaatatcaa      3960
     gtgcacatcg accgtatnga gtcggtgcaa aaaaaatttc tcctttttgc ccttcgtagt      4020
     ttgaactggg atcaaaacgt aaggctacct tcctaccaga gtagattact attgcttaat      4080
     ttacctacac ttgaaaaccg tagaataatg cttggtacta tttttatgca taatcttata      4140
     agaggtgata ttgattccgt agaactggta aaccgtttaa cttttaatgt tcccgttaga      4200
     ctaacacgaa attattaccc tcttaatttg cctcgatgta catcaaattt tactctgcac      4260
     gagccctttc gcgttctatg taanaattat aacgatcttt atcatttaat ttgcacttca      4320
     acatctatcc ccgtattaaa aactaaaatt ttanctcatt tgcttcaatc ttagttgtag      4380
     tctttgtagt atttggtttc atgtattttc ctcgcgaact cgcatttttg ccctaattga      4440
     taaagggtcc cgcgcgtaac aagcacgtgc ttggtatcgt tgggccactt gtttgtactg      4500
     ctcgtagtgc atcaacgtcc atcatatata tata                                  4534
//
ID   CR1-1_DVi   repbase;    DNA;    INV; 4778 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4778
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila virilis genome.";
RL   Repbase Reports 12(9), 1989-1989 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           457..1443
FT                 /product="CR1-1_DVi_1p"
FT                 /translation="MSCCKKPCTFKQADDSALPQFVNCWLCENMMHAKCAG
FT                 LTGRDCDKIAAIAKKGCGGLRWSCPECIDKQIDFSRMYNSVRSQFLKLNNV
FT                 AKQLSSNFDSSFELLGKYKFESPTNRRLEPQLLQLPSTSVQTPTTFLSLPS
FT                 NLEVSPMLSLSPSPSDCPITPASSPVLDPVEPVPDSVPINQTASAPSAPGR
FT                 KGRPARNLAQIVKSNHCASLAPPTPVLPTAPSAPTLTVVAPRRQVFVSRLS
FT                 SDTTSESLAAYIASKSSASVSITKFNFSTPREISSFKINVSHDMFPIICDP
FT                 KFWPPHMIVHEFKPKKRNQPVTLPVPSIQGTISAPKN"
FT   CDS           1386..4298
FT                 /product="CR1-1_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="PACHPSSPFNTGYHFCPKKLASSSDQIFIHYQNVRGL
FT                 TSKLKNLFIASTSFDSDIIAFSETWLNSTISDFEILPNNFILFRNDRPTRG
FT                 GGVLIAVKATLQSELFCFSTPTDAEIVSVKVSFPTRNIYVTCSYVPPSSDI
FT                 QVYMNHITCIKEVSSHVRDNDLLLVLGDFNLPNISWSLFTAENYLVPSAQH
FT                 DFLDCMLDLSLFQINSISNHMNRTLDLVFVNDYLISNVSRSPPLSLPEDVY
FT                 HPTLEIAMLNCNPSISCSSANKPRYCFRKGNYSLLNQLIYSTDWSFLYDSV
FT                 DMNTAINSFYITLNSLLDVCIPKSIPSTTFSKPPWFTPRLSHLKNVKSKYF
FT                 KKFKKSGSCTDLAKYSIAKSNFFLLNSQCYENYLIRCKRQFARNPRQFYNF
FT                 VNLKRKSSSLPSSFFLGMDKASNDTDSANLFANFFQSTYSSVCPNTNSYPY
FT                 TISSASSIPPPIISHSSLLLAINSLKSSYSPGPDNIPSCLLKECSSSLFYP
FT                 LLKLFNLSLETSVFPSLWKESYIIPLHKKGGKSDIQNYRGIAKLSAIPKLF
FT                 EKIITSNLQHFCKSVVSPVQHGFVKNRSTTTNLLEFTSLVNDAFLSKMQTD
FT                 VIYTDFSKAFDSVHHDILLFKLDRIGFPLSLLLWINSYLKGRTQRVILRLT
FT                 TSKRVHVTSGVPQGSHLGPLLFTLFINDLPSVISHARVLMYADDVKLFLSY
FT                 TNPLHHSRLQDDLNAMQLWCSANQLHLNCSKCMFMTFNRTTPYLVSYTIDN
FT                 IPLQRILTVKDLGVIFDSKLCFNLHIDTIVNEAKGVLGFIKRWSKEFNDPF
FT                 ITKLLYISLVRPILEYCSCIWSPQYINSQDRIESVQKQFLLFALRGLNWDP
FT                 NLRLPSYSSRLLLLNLPSLINRRTILGVVLLHKLIIGDIDSPFLLGRLQFS
FT                 VPARPTRNYRPLLLSTCTTDYAMHNSFRVLCKNYNSLHHVFSTELSLPLIK
FT                 SLLSGYLREVADHSQL"
XX
SQ   Sequence 4778 BP; 1233 A; 1072 C; 779 G; 1693 T; 1 other;
     agagagagtt ctcagttgag agtgattgac gtgttttact tgtgctccaa gatttttata        60
     tatttttgcg cttttatcct gctttatatt tcaaaatttt gcatttttcg gtgctttatt       120
     taaaaagctt ttataaactg tgcaaagtgt catctgttgt gcagcgtgtc tgttaattat       180
     tacattttat aaaacgcggc gtcagttccg tgtttgttgt tattggctgt tttaagtctt       240
     ttgcctttgt gctcccctgt gcatacactt gtttgtgcgt gtgttcgctg catactttct       300
     gcttgtgcat cgcgctctca caaatttctt tctattgctt ttcgcaccaa acaatttgtt       360
     tgtgtacgaa taattgtttt ttgagtgttt acttgtgcac cgttttcgtt tcgttttgct       420
     ctgcgctctc gcaagttgct tgtgcattta ataattatgt cgtgctgtaa gaaaccgtgc       480
     acgttcaagc aggctgacga ttctgcactg ccgcaatttg ttaattgctg gctgtgtgag       540
     aatatgatgc atgctaaatg tgcaggtctc actgggcgtg attgcgacaa gatcgctgct       600
     attgccaaga agggctgcgg tggcttgcgt tggtcgtgcc cagaatgcat cgacaagcaa       660
     attgatttct ccagaatgta taattctgtg agaagtcaat tcttaaaatt aaataatgtg       720
     gctaagcagc tctcgagtaa ttttgactcg agtttcgagt tgctaggcaa atataaattt       780
     gagtccccaa ccaatcgccg gttggagcct caacttttgc aattgccctc tacgtctgtt       840
     cagacaccta cgactttctt gtctcttcct agcaacttgg aggtatctcc aatgttgtct       900
     ttatcgcctt ctccaagcga ctgtccaatt accccggctt caagccctgt actagaccca       960
     gtagagcccg tacctgattc cgtcccaatt aatcaaactg cctcagcccc gtcagctcct      1020
     ggccgcaaag gtagacctgc gcgcaatctt gcgcagattg ttaaaagcaa tcattgtgcc      1080
     tcgttagctc ctccaactcc tgtattacct acagccccat cagcgcctac tttaacggta      1140
     gttgcccctc gtaggcaagt ttttgtgtct cgactttcgt cggacaccac ttctgagtca      1200
     ttggcagcct atattgctag caaatcttct gctagcgtgt caataactaa atttaatttc      1260
     tccacccctc gtgaaatatc atcattcaaa ataaatgttt cacatgatat gttcccaatc      1320
     atttgtgatc ccaaattttg gccaccacac atgattgttc atgagttcaa gcctaaaaag      1380
     cgtaaccagc ctgtcaccct tccagtccct tcaatacagg gtaccatttc tgccccaaaa      1440
     aactagcttc atcttctgac caaatcttta ttcattatca gaatgtcaga ggtctcactt      1500
     caaagctaaa aaatcttttt attgccagca cttccttcga ttcggacata atagcatttt      1560
     cagaaacatg gttaaactca accatatctg attttgagat attaccgaat aactttattt      1620
     tgtttagaaa tgatcggccg actcgaggtg gtggggtgtt aattgccgtt aaagccactc      1680
     tccagtctga actattctgt tttagtacgc ctactgacgc tgagattgtc tcagttaagg      1740
     tgtcttttcc tacacggaat atctatgtaa catgctctta tgtcccacct tcttctgata      1800
     ttcaagttta tatgaatcat attacttgta ttaaagaagt ttcttcacac gtgcgggata      1860
     atgacctatt attggtgttg ggtgatttta atttgccgaa catctcttgg tcattattca      1920
     ctgctgaaaa ttatctagtg ccctcagcac agcacgattt tttagactgc atgcttgatc      1980
     tttcgttgtt tcaaatcaat tcaatttcta atcatatgaa tagaacactt gaccttgtat      2040
     ttgttaacga ctaccttatt tctaatgtgt ctaggtcacc tcctttatct cttcctgagg      2100
     atgtctatca tccaacttta gagattgcaa tgctaaattg taatccttcc atttcgtgct      2160
     catcagccaa taagccccgc tattgctttc gcaaaggaaa ttattccttg ctgaatcagc      2220
     ttatttattc aaccgattgg tctttcttat atgactcagt tgatatgaat acagccatta      2280
     attcttttta tatcacccta aactccctct tagatgtgtg tattcctaag tcaattcctt      2340
     cgactacttt ttcaaaacca ccctggttta ctcccagatt atcacatcta aaaaatgtaa      2400
     aatccaaata ttttaaaaag tttaaaaagt ctggttcgtg tacagacttg gctaaatatt      2460
     ccatagccaa gtcgaacttc tttcttctta attctcaatg ctatgagaat tatctaattc      2520
     gttgtaaaag gcaattcgcc cgaaatccga gacagtttta taattttgta aacttgaagc      2580
     gtaagtcttc aagtttgcca tcttcttttt ttcttgggat ggataaagct agcaatgaca      2640
     ctgattctgc taacctcttt gctaattttt tccaatcaac ttactcttca gtctgtccta      2700
     atactaattc ttacccttat actatttcct ccgctagttc tatacctccc cccattattt      2760
     cacactcctc tctcctatta gctataaact ctctaaaatc ttcttactct cctgggccgg      2820
     acaatattcc tagttgtcta ctcaaggagt gtagttcttc ccttttctat ccattgctaa      2880
     agctttttaa tctatccctt gaaacttctg tctttccatc tctttggaaa gaatcttata      2940
     tcattcctct tcacaagaaa ggtgggaagt ctgatataca aaattacagg ggcattgcaa      3000
     aactgtctgc tattcctaaa ttatttgaaa aaataatcac ttcgaatttg cagcatttct      3060
     gcaaatcagt tgtttcccct gttcaacatg gattcgtaaa gaatcggtca actacgacca      3120
     atctgcttga gtttacttcc ttggtaaatg atgctttcct ttcgaaaatg caaactgatg      3180
     tcatttacac tgacttcagt aaggcgtttg actctgtgca ccatgacatt ttacttttta      3240
     aacttgaccg aataggtttc cctctgtccc ttttactttg gattaattct tatttaaaag      3300
     gtaggaccca aagagtaata ctgaggttga ctacctctaa aagggttcac gttacttctg      3360
     gtgttcctca aggtagtcat cttggacctt tactctttac actttttata aatgatcttc      3420
     cctctgttat atcacatgcc cgtgtactca tgtatgcgga cgatgtcaaa ctttttctat      3480
     catacactaa ccccctacat cattctcgtc tacaagacga tttgaacgct atgcaacttt      3540
     ggtgttcggc caatcaattg catctaaatt gttcaaagtg tatgtttatg acttttaatc      3600
     gtactacacc ttatcttgtc agttatacaa tcgacaatat ccctttgcaa cgtatactaa      3660
     cagttaagga tctaggcgtt atttttgatt ctaaactctg tttcaatctt catatagata      3720
     ccattgttaa tgaggcaaaa ggtgtacttg gattcattaa acgatggtct aaagagttta      3780
     acgatccttt tataacaaaa cttctgtaca tctctcttgt tcgccctatc cttgaatact      3840
     gctcttgcat ctggtctcca cagtatatca acagccagga tcgtattgaa tctgttcaga      3900
     agcaatttct gctttttgcc ttacgaggtt taaattggga ccctaatctt cggttgccgt      3960
     cctactccag cagactgctt cttctcaacc ttccgtcgtt aatcaaccgt aggacaattc      4020
     tcggtgttgt ccttctacat aagttgatta ttggcgacat tgattctcct tttctgctag      4080
     ggcgtcttca attctctgtt ccggctagac caaccagaaa ttatcgcccc ttattactat      4140
     ctacgtgcac aactgattac gctatgcaca attcttttcg cgtgctatgt aaaaattata      4200
     atagtttgca tcacgttttc tctaccgaac tgtctctacc cctaataaaa tcgttgcttt      4260
     caggatacct tcgggaagtc gctgaccatt cccagctatg agcaggggca tagctagccg      4320
     gacaggctga aaaattttcc cccaccgtgt cggtgatttc ccattacttt tctctttgtc      4380
     ctatccactt aacactcttt atctaactta cattgcttta ctttattaac aattttctta      4440
     ctttcttttt tcctatttat tgtattttct ttattaattt agcaaattaa gattattttt      4500
     aatttcactt gagatcactt ttttcctact tacaaccttc tgcttagatg taggctctaa      4560
     tagcgtcact gacaaaatta gctgtgaaaa ggggcacagc tggccggact ggcaaataaa      4620
     acacctccat cggtcggtga tgctatttag aaaattgtat cctttaacta ggcttttagc      4680
     atatamttat attgtacaac cttttgaata atgaggaaga cactcgtttt gtcgaccatt      4740
     aataaataaa taaataaata aataaataaa taaataaa                              4778
//
ID   CR1-1_DWil  repbase;    DNA;    INV; 4718 BP.
XX
AC   .
XX
DT   23-FEB-2007 (Rel. 12.02, Created)
DT   23-FEB-2007 (Rel. 12.02, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_DWil.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4718
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-1_DWil, a family of young CR1 retrotransposons from the
RT   Drosophila willistoni genome.";
RL   Repbase Reports 7(2), 110-110 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a very young family of CR1 non-LTR retrotransposons.
CC   CR1-1_DWil copies are less than 1% divergent from the consensus
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           641..1648
FT                 /product="CR1-1_DWil_1p"
FT                 /translation="MVVCSKNNCIVATNAVDSHDYILCWLCDNAVHVKCAG
FT                 YTGRIKESIAKGGGLKYGCDACREVENEMRSFMRRTRDSFDTLRAGFNKLQ
FT                 AEFTAVETQFRSLSLMNESPKRKRTSPWGVSVSVDPPASLIVPDRSHAPST
FT                 PNVQQLISFKSPVVNAISNELPVSPGNDLLKTMPIVVSDVSGQLPIPMEIA
FT                 DSSKSIEGPVNKLTAAVGDLSNVTAAADASGPRPLVGIPPKKHIFVSRLDP
FT                 VVTSDDVIAYIRKKVNVSNIAVEKFKFSYSRDISSFKISVSANIFDTICRE
FT                 DFWPKHIIVKEYTVKKKNRQPIRLPTTTTNTIPATSASAGVSKN"
FT   CDS           1606..4482
FT                 /product="CR1-1_DWil_2p"
FT                 /translation="YYSCHISICWCVKKLASSLNLGYQNVRGLKSKLPNLY
FT                 VDSLSFEHNILAFTETWLKPDIADASVFSTNFSIFRRDRISRIGGGVLIAV
FT                 DAALSSEMIQFSSTQEIEFVGVKVNFKSFNAFITCSYIPPLSDMVVYLNHL
FT                 EAIQFVSSLVSSQDMLIVVGDFNLPALAWSLTDESTTLLPSLSHDFIDGLL
FT                 GLSLSQVNPVLNSNGKSLDLIFVLDSSYCEVSRIEPFVLPEDKFHPTLNLK
FT                 IDLPLLSPLLGSNELPLTRCFRKTDFASLNENIATTDWSYLYNCSDMNSAV
FT                 RFFYDTLNSLFDICVPLGRLERLNKPPWFSRELSNLKNVKTRYYKKFQKTR
FT                 RSSDYALYTVARSKFMMLNTQCYKNYLQRCKLQFSSDPKQFYNFVNSKRKT
FT                 SVHPSFLSFQNKKASTDQAIADMFASFFKTTYSSTEYRASPYPYHLKKANC
FT                 IFNPVIDESSILTELKLVKPVYSPGPDGIPGCILRFCANALCKPILKLFLL
FT                 SVESSSFPSIWKESYIIPLHKNGKKSEASNYRGISKLSAIPKAFEKIITSQ
FT                 LQHFCSSIISPSQHGFVKRRSTTTNLLEFTSIIIKGFKNGKQTDVIYTDFS
FT                 KAFDSVNHTLLLSKLSDIGFPPLFLSWVREYLTNRKQKVLFKSSFSVSISV
FT                 TSGVPQGSHLGPLLFTLFINDLPSVIVHSRVLMYADDVKLCLTYKDTDSFS
FT                 RLQADLKNFQSWCQFNLLNLNTTKCKVMTFFRNSPQLVTYILNNSPLERLN
FT                 NMNDLGVLMDHKLNFNTHISTTVAKAMSVLGFIKRWSKEFDDPYTTKVLFT
FT                 SLVRPILEYGSCIWSPQYESHQIRLESVQKQFLLFALRGLSWDRNVNLPSY
FT                 SSRLLLINLPSLTNRRIMLGVIFMHKLLIGDIDSPELLAQVNLSVPCRRSR
FT                 HPLIPLSLSRCSSNYAMHEPFRVLCSDYNLLSPVIGSEFSINMLKTSILSH
FT                 LVNR"
XX
SQ   Sequence 4718 BP; 1254 A; 951 C; 846 G; 1667 T; 0 other;
     aaaaactttc actcgttgca gaggacggac gtgttttttt tgcgcttatc aacttttatt        60
     ttttctcgcg attaaatact tttatataac tcttaaatta tcggtttaat taataacaat       120
     tacaacatcc gaattttacg attaaatact tttatataac tcttaaatta tcggtttaat       180
     taataacaat tacaacatcc gaattttatt ttcatttcgc gaattcttgc tgtcgttttt       240
     gtttaaattt aaataaaatc aaaacttaca acaatacttg cattagcggt gttgttgttt       300
     tgtttatctc ttttgctttt gtgtctttac cgttttaact aactctcgcg ctcttgcgta       360
     caaattgttg ttgcatgtgt tcaatttgac gcgctctccc gctctttcct attcttgatt       420
     gatttgcgct ctcgtctttt gcctacccgc gactctgtga tacgtgtttt tgtttttgtg       480
     tttttcattt ctttttattc tttagttgtg aaggcttact ctgcacatta acccttgtgt       540
     cagaactggt cagtatattc ttatacacag atttttaacc tttagaattt ttattttttt       600
     ttgtatttcc tttttcaatt aaattaaact ttttgataaa atggttgtct gctcaaaaaa       660
     taattgcata gttgccacta atgcggttga ctcccatgat tatattcttt gttggttgtg       720
     tgacaatgcg gttcacgtca agtgtgcagg ttacacaggc agaatcaagg agtctattgc       780
     taaaggtggt ggcttaaaat atggatgtga tgcttgccgg gaggtcgaga atgagatgcg       840
     ctctttcatg aggcggacta gagatagttt tgacacttta agggcaggtt ttaataaact       900
     ccaagcggag tttactgcgg tggagactca gttcagaagt ttatcgctta tgaatgagtc       960
     tccgaaacgt aaaaggacca gtccttgggg tgtttctgta tctgtagatc cgccagcgtc      1020
     tcttatcgtc cccgaccggt ctcatgcacc gtccactcct aatgtacagc aattgatatc      1080
     gtttaagagc ccggttgtga atgctattag taatgaatta ccggtatcac ctgggaatga      1140
     tctcttaaaa acgatgccta ttgtagtgtc cgatgtgtct gggcaattac ccattccaat      1200
     ggaaattgcc gatagttcta aaagtatcga gggccccgtg aacaagttga ctgctgcagt      1260
     gggtgacttg tccaacgtta ctgctgcggc tgacgcttcg ggaccgcggc ctctcgttgg      1320
     cataccacca aagaaacata tatttgtttc taggctagac cctgttgtca catctgatga      1380
     tgtaatagcc tatattcgga agaaagttaa cgtctcgaat attgcggtgg agaagtttaa      1440
     attttcttat tctcgggaca tttcgtcctt taaaattagt gtttctgcca atatcttcga      1500
     cactatatgt cgagaagatt tttggcctaa acatataata gttaaggaat atactgtaaa      1560
     aaagaaaaat cggcaaccga ttcgcttgcc tacaacaaca actaatacta ttcctgccac      1620
     atcagcatct gctggtgtgt caaaaaacta gcttcgtccc ttaacctggg ttaccagaac      1680
     gttagaggac tgaaatctaa acttcctaat ctctatgtag atagtctttc ttttgagcat      1740
     aacattctag ctttcacaga gacgtggcta aaacctgata ttgctgatgc atcggttttt      1800
     tccacaaact tttctatttt cagacgtgac cggatttctc gcataggtgg tggcgttctg      1860
     atagctgtgg atgctgcttt atcatctgaa atgattcaat tttctagtac ccaggagatt      1920
     gagtttgtcg gtgttaaagt aaattttaaa tctttcaatg ctttcattac ttgttcctat      1980
     attccaccat tgtcagacat ggtggtatat ttaaatcatt tagaggcaat tcagtttgtc      2040
     tcctctttag tttcgagcca agacatgctc atagttgtag gtgattttaa tttacccgct      2100
     ttagcatggt cactaacaga tgaatctacc acgttgctgc cctctttgtc acatgacttt      2160
     attgatggcc ttctaggctt atctttatcc caagtcaatc ctgtcttaaa ttctaatgga      2220
     aaatcgttag atcttatttt tgtattggat tcttcttatt gtgaggtttc taggatcgaa      2280
     ccatttgttc ttccagaaga caaatttcat cctacattaa atttaaaaat tgatttgccc      2340
     ttgctttcac cattacttgg ttcaaatgag ttaccactaa ctaggtgctt tcgtaagact      2400
     gactttgcca gccttaatga aaacattgct actaccgatt ggtcttatct gtacaattgt      2460
     agtgatatga actcggctgt tcgttttttc tatgatactc tgaattcact ctttgatatt      2520
     tgtgtgcctc ttggtaggct ggagcggctt aacaaacctc cctggttctc tcgcgagcta      2580
     tccaatttga aaaatgtgaa gacacgatat tataagaagt tccaaaaaac acgtcgttca      2640
     tcagattatg ctctgtatac agtcgctcgt tcaaaattca tgatgcttaa tacacaatgc      2700
     tataagaatt atcttcagcg gtgtaagctt cagttttctt ctgaccctaa acaattttat      2760
     aattttgtta attctaaacg taagacctct gtgcacccat cttttttgtc ttttcaaaat      2820
     aaaaaagcga gcactgatca ggcaattgcc gatatgtttg cgagtttttt caaaacaact      2880
     tattcctcaa cggaatatcg agcaagtccg tatccttatc atttaaaaaa ggctaattgc      2940
     attttcaatc cagtgattga tgaaagttct attcttaccg aacttaaatt agttaaacct      3000
     gtttattctc cggggccaga cggtattcct ggatgtatac tcaggttctg tgcaaacgca      3060
     ttatgtaaac ccattttaaa attgtttcta ttgtctgtag aatcttcctc ttttccatct      3120
     atttggaagg agtcgtatat tattcctctg cataaaaatg gcaaaaagtc cgaagcctct      3180
     aactataggg gtatctcaaa attgtccgct attccgaaag cttttgagaa aattataact      3240
     tctcaattgc aacatttttg cagctctatt atttcgccat cccaacatgg gtttgtgaaa      3300
     cgtagatcta caaccactaa ccttttagaa tttacatcaa taattatcaa ggggttcaaa      3360
     aatggtaaac aaactgatgt catatacact gacttcagca aagcctttga ttccgttaat      3420
     cataccctat tactttctaa gctgagcgac attgggtttc cacccctttt cctttcttgg      3480
     gttcgagaat atttaacaaa tagaaaacag aaggtacttt ttaagtcttc tttttccgtt      3540
     tccatttctg tgacttctgg tgtacctcaa ggtagtcatc ttggccctct gctcttcaca      3600
     ctatttatta acgatcttcc atcagtcatt gttcattcgc gtgtgcttat gtatgctgac      3660
     gatgtcaagc tttgtcttac ttataaagat acagattcat ttagtcggct acaagctgat      3720
     cttaaaaact ttcaatcctg gtgccagttt aatctactaa atcttaacac taccaaatgt      3780
     aaggtaatga ctttttttcg taactctcct caactggtca cttatattct aaacaacagc      3840
     cctttagaac gtctaaataa tatgaatgat ttgggcgtac ttatggacca taagttaaat      3900
     tttaacaccc atatttccac cacggtcgca aaggccatga gtgtcctggg tttcattaaa      3960
     agatggtcaa aagaatttga tgacccctat acaactaaag ttctttttac ttcgcttgtc      4020
     cgtcctattt tagagtatgg atcttgcatt tggtcacctc aatatgagtc gcaccagatt      4080
     agactagaat ccgttcaaaa gcagttcttg ctatttgctc ttcgtggctt aagctgggat      4140
     cgcaatgtca atttgccttc gtattctagt agacttctct tgattaacct tccgtcccta      4200
     actaaccgta gaattatgct tggtgtcatt tttatgcaca agctcctaat tggtgatatc      4260
     gactcgcctg agttattagc tcaggtgaat ctgtcggtac catgtagacg gagtagacat      4320
     cctttaatac ctttatccct tagtcgttgt tcttctaact atgctatgca tgaacctttt      4380
     agggtcctct gctctgatta caatcttcta tcccctgtaa tcggctcaga gttttctatt      4440
     aatatgctta aaacatctat cctatcccat ttagttaata gatagctata gtattatgtg      4500
     tttgtctgtc ttttctattg tgtattttgt ccacgcgatt cgtgccgtgc gttatacggc      4560
     tgcacccctc ggtcggtcgg gtgggaggtg ggcagttatc tgcttgggct cgcgcgtaac      4620
     aggctttgtc ctggtgtcgt aggggccact tgaacgtact gcgcatagta tcgtcaacgt      4680
     ccgctaataa aaaaaaaaaa aaaaaaaaaa aaaaaaaa                              4718
//
ID   CR1-1_Hmel  repbase;    DNA;    INV; 4892 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Heliconius melpomene.
XX
KW   Non-LTR Retrotransposon; Transposable Element; non-LTR; CR1;
KW   Heliconius melpomene; CR1-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4892
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-4892
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1606..4512
FT                 /product="CR1-1_Hmel_1p"
FT                 /translation="MDENLNVLNNIDIIKSTDSIKCNIESLPNFLSKTNLK
FT                 LTTIVTQNIRSTTKNFDDLLINLTLLPNDPDIIILTECRLQTAKSVPILDN
FT                 YSSFQTINLLNQNDGVIVYIRNNINSEVSELSLYEATGLEIKFANYVILGL
FT                 YRSPSFIHADNFILSLNNYLSGITKCNNVFILGDINIDLISTPREKSWERN
FT                 NRLNYLNILSTHGLMPGHMLPTRDDSCLDHVMLKIDNSHSSSLVAVLNTTV
FT                 TDHNMVTLHISQGLKTSKLLKYKTIIDYENAYNSLITADVLCLNIFKDPEC
FT                 YAVALIDMIKTILSKHSRVVSIPSNKRIKKPWITIGALRCIRLRNLMQIKL
FT                 RTNSHNEILKITFKRYRNFCSNLIHKLKRQYHKNKINKHLKQPRKLWSTID
FT                 YIAQYKQEKTTNTNLLAVRTTPQESVNHVNKYFVSIGQSLAEVIYSSKQFQ
FT                 NTSVISHSQYSTVSSFVLLDTDPTEVDRILIGLDSNSAPGWDGISTKFLKM
FT                 ARAFIVPLICSLANLCFHKGIFPKALKRSIVTPVFKGGDKTDVNNYRPISV
FT                 LTSISKIVEKLLNNRLMGYLNKFNILSSSQYGFRKGLSTQDAILALTSLIV
FT                 QEVDKGNKCLAVFLDLKKAFDTVSVVTLVRRLEQIGIRDKALSLFKSYLGD
FT                 RKQMVRIGEHLSSEECVTYGIPQGSVLGPTLFLIYINDLCKLQDIGGNIFS
FT                 YADDTAIVFTGKSWLDVKNKAETGLAKISKWLCDNLLTLNIQKTSYICFTK
FT                 YANTQPTLDFSLKIHNCQQDNSTLNICHCPTLQKVISTKYLGIMLDQRLCW
FT                 TAHIELLMTRIRKLIRVFKSLRHVMEKELLKRIYIALVQSVITYCIPIWGG
FT                 SAKSHFLSLERAQRALIKVMYFKSYRFPTSVLYEXSGILSVRKLYILNLIL
FT                 KCHGTIXFDKNKLRKRRNDRVAPICKVRSSFAKRQYGFQSATLYNKINRFL
FT                 XIYSXXXFMQEDFD"
XX
SQ   Sequence 4892 BP; 1673 A; 939 C; 800 G; 1444 T; 36 other;
     gtttagcwtg ttwscttctt cgcctggcta ccgttgagtt tggacgtgtc cacgataatt        60
     attttgccgt gaccagtgtt tatgaccctt cgcttacgag agttaccgwa gccgccggtg       120
     tctcgcacaa ctggtttacw aaccggtgac aaggtcatct gaccgcacta ctcgcacgta       180
     gcgtaatcgg atataaggwg ctmctctcgg gggttggtga gtgagaacac attatattat       240
     gacgcgatct tacaaawacg tctaacgaac atctaactta ccatccacct tttamtatat       300
     acaattgaaw aatgtcagtg cgacgtwctc cgccaaagaa tgaagctcct gggtcaaaat       360
     tgcaccaaag tgctwctatg gatgtcgtca actatggatc tgactctgaa ttacttggta       420
     aaaaaacwga aacatcccct ccatatgttt ttcatcgtaa taaacgsctt agaaaacagg       480
     actcgccacc ttcagaatat tcttgcctta aggatgaatt aaaatccctt acatcgctca       540
     tcagtgcaca aaakatagtt tttgacgaaa taactaccaa gttaaaaagc attcaagaaa       600
     ctaacactaa aattgaaaca caaatgtcgt tactcacgtc tcaaaacgaa gaattttgta       660
     agaaaattga gcgcctcgaa ctccaaacta agctggatcg tgaacatata atcgtactag       720
     aggatagaat tgaagacttg caaagataca cacgaaaatc ttgtatcgaa ataaaaaatg       780
     ttccacgaaa actacacgaa aatcaagaag atttagttaa tatggttgcg agcctaggcg       840
     gtaccttaaa gwtagacttg aatacgcgag acattacgga tatcttcaga ttacgaagca       900
     gaaaagactc tgagaaaagt cccccaatag tggttgaact ctcctctaca ctaatgagaa       960
     caagtttgct tagaaaggtt aaggatttta atataaaaaa taaatgtaaa ttacaagcaa      1020
     aacatctagg ttttactaaa aacgaagatg tgcccgtgtt tatatcagag caactaactg      1080
     caaaaggctc ccgtctattc ttcctggcgc gagatctagt aaaatcaaaa aagttcaaat      1140
     tttgctggac ggcttttgga aaagtttttg tcaggaagga cgataactcc aaaataatat      1200
     taatacaaaa cgagagtcaa atccatcagc tacagcaaga aatatgacta tatggtaatt      1260
     tttcttgcgg taccgtacga tttctttact tttctatatt ttatgatctc attttgctat      1320
     ttaaatatgt atactgcatg ctaattagat ataagcaaat cgtttcttgt ttatcgaaag      1380
     attttgggcc aaacctattt gtcttcaaca ttattataca ctacacaccg atctcacata      1440
     caattaaaca tataaacttt attaactata tatgttattc tgtgcatatt tataataaaa      1500
     ctaatactta ctttgtaata aataaaacga taagaacata cagtaaaaaa ctaataccta      1560
     tgatgcctgc cagcgacatc ccgcaatata gcgtgtctcc cgattatgga tgaaaaccta      1620
     aatgtattaa ataatataga cattattaaa tctacagact caataaagtg taacatagaa      1680
     agcttaccca atttccttag taaaactaat ttaaaattaa ctacaattgt cacacaaaat      1740
     ataaggagta ctacaaaaaa ctttgatgac ttactgatta atttgacgct actaccaaat      1800
     gacccagata taataatttt aactgaatgt agattacaaa cagcgaaatc agttcccatt      1860
     cttgataatt attcatcttt ccaaacaatt aatctactaa accagaacga tggtgtaatt      1920
     gtttatatta ggaataatat taattctgaa gtaagtgaac taagtttata tgaagctaca      1980
     ggacttgaaa ttaaatttgc taactatgtt atactgggtc tttatagatc tccgtcattt      2040
     atacatgccg acaattttat tttatccctt aataactacc tgagcggtat tactaagtgt      2100
     aataatgttt ttattcttgg ggatataaac atagatttga tatcgacacc aagagaaaaa      2160
     tcttgggaac gaaacaatag gttaaattat cttaacatcc tctccacaca tggactcatg      2220
     cccggtcata tgttaccaac gagagatgac agctgcctcg accatgtgat gcttaaaatc      2280
     gacaattccc acagctcatc cttggttgcg gttttaaata ctaccgtgac ggatcacaat      2340
     atggttactc tacacatctc gcagggattg aagacatcta agttactaaa atataaaact      2400
     attattgatt atgagaatgc ttacaattca ctgataaccg cagacgtact ttgtcttaac      2460
     attttcaaag atccagaatg ttatgctgtg gcgctaattg atatgataaa aactattctc      2520
     agtaaacact cccgtgttgt atccatccca tccaacaaaa gaattaaaaa gccgtggatc      2580
     acaataggtg ctctgcgctg tattaggtta agaaatctaa tgcaaattaa acttaggaca      2640
     aattcgcaca atgaaatttt aaaaataact tttaagcgtt atcgtaactt ttgttcaaat      2700
     ttaattcata aactaaaaag acaatatcat aaaaacaaaa taaataaaca tcttaaacag      2760
     ccaagaaaac tatggtctac tattgattac attgcccaat ataaacaaga aaaaaccaca      2820
     aacaccaatt tattggcagt acgaaccact ccacaagagt cagtaaatca tgtgaacaag      2880
     tattttgtca gtattggaca aagcttggca gaggtcatct atagttcaaa acaatttcaa      2940
     aacacatccg tgatttcaca tagccaatat tcaaccgtat catcttttgt tctgcttgac      3000
     accgatccca cagaagtgga cagaatacta attggtcttg attcaaacag cgccccgggt      3060
     tgggacggta tttcaaccaa atttttgaag atggctagag catttatagt cccgctgatc      3120
     tgctcgctgg ctaatttatg ctttcataag ggtatattcc caaaagcact taagcggtct      3180
     atagtgactc ctgtgtttaa gggtggggat aaaaccgacg ttaataacta taggcctata      3240
     tcagttttga cttctatctc taagattgtg gaaaaactct tgaataatcg actgatggga      3300
     tacctgaaca agtttaatat cttatccagc tcacaatacg gttttaggaa ggggctctct      3360
     acacaagatg ctattttagc acttacatct cttattgtgc aagaagtaga taagggtaac      3420
     aaatgtctcg cagtcttcct agacttaaaa aaggctttcg atacggtctc tgtagtcaca      3480
     cttgtacgcc gactggagca aataggtata agagataaag ctcttagtct attcaagagc      3540
     tatcttgggg atagaaagca aatggtcagg attggagaac acctaagtag tgaagaatgt      3600
     gtcacttacg gtathccgca gggaagcgtc ctcgggccaa cgctctttct tatttacata      3660
     aacgacctat gtaagcttca ggacattgga gggaatattt tttcctatgc tgatgacact      3720
     gccatcgtgt ttactggcaa gtcttggcta gacgtaaaaa ataaggcaga aaccggttta      3780
     gcaaaaatat caaagtggtt gtgtgataat ttattaacat taaacataca aaagacaagc      3840
     tatatatgtt tcacaaagta tgcaaataca caacctactc ttgatttctc cctaaagatt      3900
     cataattgtc aacaagacaa ctctactctt aacatttgtc actgtcccac cttgcagaaa      3960
     gttataagca caaagtacct tgggattatg ttggaccaaa ggctgtgttg gactgctcac      4020
     attgaactcc tgatgactcg tatcagaaaa ctaatacggg tcttcaaatc actcaggcat      4080
     gtgatggaaa aggaattatt gaagagaatt tacattgcac ttgtgcagtc tgttattact      4140
     tactgcatcc cgatctgggg tggctctgca aagtcccatt tccttagttt agaaagagcc      4200
     caaagagctc tcattaaggt gatgtacttt aagtcataca gatttccaac aagtgtctta      4260
     tatgaattba gcggtatatt gtctgtgcga aaactctata ttctaaacct aatcttaaag      4320
     tgtcatggaa ctatachttt tgataaaaat aaattaagga aacgacgaaa tgatcgtgtt      4380
     gccccaatat gtaaagtacg ctcgagtttc gcaaaacgac aatatggttt ccaatcggct      4440
     actttataca ataaaataaa tcgcttcctt bgcatatatt ctatrrawaa mttcatgcaa      4500
     gaagattttg actaattggc taaataaact ttcttatata gaaactgaaa cattactttc      4560
     gtaatattgt tctctatttt acacavaatg cacagataaa tataacctat atawakaaca      4620
     ggacatgtac ggaaaaccct ttcatacctc atgbtcgcac acacacacac acacacacac      4680
     wcacmcacac rcacwcacac acacacacgt atacggcccc cttrtttatc ttctgttata      4740
     tytattaact attctctaag cttaaatgta tcaaacggag aagcgagtca ttcccaacac      4800
     aagtatcctt gattacttac tgggaagtct cagcgaytca acttgtaava aaactatgag      4860
     aataaagcta tttttatttt tttttttttt tt                                    4892
//
ID   CR1-1_HMM   repbase;    DNA;    INV; 2142 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2142
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2780-2780 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1584
FT                 /product="CR1-1_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="KFFYSYIKMKRSNKCNFPALMTLNGVSSTNGSDICNQ
FT                 FATHFSSVYTSQNLTTLHPYKATLLNCTSELSKINIQEKDIVDKLKCIDTN
FT                 KGAGPDNIPPFFVKQCAVHLAKPLFLLFNKSLCVGEFPCSWKVAKVVPVFK
FT                 AGDRKDISNYRPISILSVFSKIFESLICPVLTWHMKSAIIENQHGFITKRS
FT                 TLSNLAIVVDDLAMALDNSEQVDCVYTDFAKAFDVVDHSILLNKLSVYGIN
FT                 GNLIKWLKTYLLNRKMNVVLGGYLSQTFTATSGVPQGSILGPTLFGFFIND
FT                 IHDCFRHSRFQLYADDLKIYSKIINIADSIKLQQDLDRLSLWCDNNNLKMN
FT                 HLKCHILTFSRKVKNINFNYSINGNILGRVNQISDLGIILDNKLSFIPHLD
FT                 DIIKKALKLLGFILRASKEFKRSSTKITLFNSIIRSKLEYCSIAWNPHYKS
FT                 HENRLERVQKRFLRQLAYKDNLLKQTKSYSDHLRFYNALSLSNRRDLLDLC
FT                 FLHKIINGGIDSPNLLHRIGLAVPRHTFXKPQ"
XX
SQ   Sequence 2142 BP; 738 A; 323 C; 327 G; 752 T; 2 other;
     aaattcttct actcttatat taagatgaag cgttctaaca aatgcaactt ccctgcttta        60
     atgactttga acggcgtttc gtcaaccaat ggatctgata tttgcaatca atttgcaacg       120
     cacttctcaa gtgtgtatac ttcacaaaat ttaacaacac ttcatccata taaagctaca       180
     ttgttaaatt gcacttcaga gttgtcaaaa ataaacatcc aagagaagga tattgtcgat       240
     aaattaaaat gtattgatac aaataagggc gctggaccgg acaatatacc tccctttttt       300
     gttaaacagt gtgctgtcca tctagctaag cctctattct tattatttaa taaatcttta       360
     tgtgtaggtg aattcccgtg ttcatggaaa gttgcaaaag ttgtccccgt ctttaaggcc       420
     ggtgatagaa aagatatttc aaattataga ccaatttcca tattgtcagt tttttctaaa       480
     atattcgagt cattaatttg tccagtgctc acgtggcaca tgaaatcagc aattatagaa       540
     aatcaacatg gttttatcac aaaacgatcc actctgtcga acttggcaat agttgttgat       600
     gatttagcta tggcgttgga taattctgaa caggtagatt gcgtttatac agacttcgcc       660
     aaagcattcg acgtcgtcga tcatagtatt ttattaaata aacttagtgt gtatggtatc       720
     aatggcaatc taattaaatg gcttaagact tacttgttga atcgtaaaat gaatgtagtc       780
     ttagggggat atctgtcgca aacgtttact gcgacctctg gtgtccctca aggttccatt       840
     cttggcccca cattgtttgg gttttttata aacgacatac acgactgttt taggcatagt       900
     agatttcaat tatatgctga cgatcttaaa atatacagca aaattattaa catagccgac       960
     tcgattaaat tacaacaaga tttggataga ctttcattgt ggtgtgataa taataactta      1020
     aaaatgaatc atctcaaatg tcacatttta acatttagcc gtaaagttaa aaatattaac      1080
     tttaactatt ctataaatgg aaatatttta ggaagagtca accaaattag cgatctcggg      1140
     atcatattag acaataagtt aagttttatt ccacatttag acgacataat aaaaaaggca      1200
     ctaaaactgc taggtttcat tttgcgagcc tcaaaagaat ttaaaagatc cagtaccaaa      1260
     ataacattat ttaactctat aatacgtagt aagcttgaat attgttctat tgcatggaat      1320
     cctcattaca agtcacatga aaacagatta gaaagagtac agaagagatt tttacgtcaa      1380
     ttggcttaca aagataactt gctgaaacaa actaaaagct attccgatca cttaagattt      1440
     tataatgccc tttctttatc taatcgtaga gatttacttg atctttgctt cttacataag      1500
     attataaatg ggggtataga tagtccaaat ttgttacaca gaataggttt agcagtacca      1560
     aggcacacat tcwagaagcc acaataaaaa taagcacact tttaaagtgc gtttctgtag      1620
     gagtaacata ggcaaagcag ctccattaaa tagaastcta atattatata acagcatatt      1680
     caaaaaagca gctttagata tatttaaaca atctatatca tctttcaaac tacaaacaaa      1740
     aaaaaatatg ttttctctta aaaaataatt atcaattaac ttgaaattat tagttatgtt      1800
     ttttaatagg taaaatcatt gttaaatttt tgtgttctgt ttcttatata gtacttataa      1860
     gttttttatt tttattatac tttatataaa ttattatatt ttatatatat atatatattt      1920
     tgaagtgtaa gtaatgttag tgtagaatga tttgtattgt gtttgttttc tgttgttttt      1980
     cttttttatt tcatgcatgt caagttagcc tgtaagtggg gtatacaatt aatgtagtac      2040
     tcgcgtaaga ttgtttttgt ttttagcgtt tgtattatta ttgtatacaa cgttggcttc      2100
     ctattaaata aaataaaata aataaaaata agcaaatcaa aa                         2142
//
ID   CR1-1_LMi   repbase;    DNA;    INV; 4260 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   09-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4260
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3109-3109 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1765..4188
FT                 /product="CR1-1_LMi_1p"
FT                 /translation="MVIGCFYRPPGSAAVVAEHLKENLENISSRFPDHVIV
FT                 LGGDFNLPDIDWETQTFMTGGRDKESSEIVLSALSENYLEQLNREPTRGDN
FT                 ILDLLVTNRPELFETVNAEQGISDHKAVTASIISAVNRNIKKCRKIFLFGK
FT                 SDKKRISEYLTAQHRSFISSTDSVEEQWSKFKAIVQYALDEYVPSKIVRDG
FT                 KEPPWYNNRIRKLLRKQRELHCKHKHSQSLVDKQKLNEAKCSVRRAMREAF
FT                 NEFESKVLCTDLAENPKKFWSYVKAVGGSKQNXQTLCDENGIETEDDTLKA
FT                 ELLNVFFQSCFTEEDCTVVPSLDCRTDYKMADIEIIDRGIEKQLKSLKRGK
FT                 AAGPDGIPVRFYTEYAKELAPLLAVVYRRSLEERSVPKDWKMAQVIPVFKK
FT                 GRRTDVQNYRPISLTSVSCRILEHVLCSSIMTFLETRNLLCRNQHGFRKRR
FT                 SCETQLALFVHETQRAIDTGSQVDAVFLDFRKAFDTVPHRRLMNKVRAYGL
FT                 SDQLCDWIEEFLDNRMQHVILNGEKSSEVRVMSGVPQGSVVGPLLFTIYIN
FT                 DLADNIGSSLRLFADDAVVYREVVTMENCIEMQEDLHRIDAWCREWQLNLN
FT                 VDKCNVLRIHRKKDPLSFSYTIAGQQLEAVNSINYLGVGIRSDLKWNDHIK
FT                 SIVGKADARLRFIGRILRKCSPKTKEVGYSTLVRPQLEYCSPVWDPYQVGL
FT                 IEEVEKIQRRAARFVTGSFGNRESVTEMIDKLQWKTLQERRSVARYGLLSK
FT                 FREHTFTEESSSILLPPTYISRRDHEDKIREIRAHTEAYRQSFFPRTIRDW
FT                 NRRENR"
XX
SQ   Sequence 4260 BP; 1202 A; 840 C; 1164 G; 1050 T; 4 other;
     tagttattct cgcatatttg ataaatactg tttgatagcc ttgtctgtgg ctggttttca        60
     aaacaagtca gagaccttac tacagtcgtt atcagtcagt ccagtgccag ctgttgccag       120
     tgtcacatcg taaacagcgc taagtatcta atttaatttg tgtcaaattt aatttgccag       180
     tctagttctt cattttcgtt agtacttctg ttttaagagg tttattctcg cgtacttggc       240
     agatttcgtt tgtgctactg ttttaatagt ttattctcgc gtatttgata agtactgttg       300
     ggcgcgtcag cagcacacag tcagcagcac cagcagagtt acagctaagc aggagcgaac       360
     tattgtgact tatttgtggg ctgagcagtg tcaatttcta taaactcgcg ctagtaacaa       420
     gatacttaac tctctacagg caattgttga tttgttagga tggataggat gtgtgactgc       480
     tgcgtacgga cgcaggagga gctggccgct gttcgcgagc agctgagcgt gctgttggcc       540
     gcggtcagcc gtcttcaggc tgctgcctcg gagtgttgcg gcagtggggg ctctggtgcg       600
     tcgcatggga caccacaggt gttacatgct tcacccacgg tccctgctgt cgggacatct       660
     tcgcgcgtgc cggacgcggt tgagccaccc tctcctcaag gggtgtggcg ggttcaacgg       720
     cgttcgcgtc gctcggggcg aaaggtcaat gtggaggctg gccgtgcggc gtcgcccgct       780
     ctgcctgtga gtggacatgt ggccgctcct tcagcagggt ccgagcaggc acacgggggg       840
     aggggtwtat tagtgattgg gagctccaat gttaggcggg tgatggagcc ccttagggaa       900
     atagcggaaa ggtcggggaa gaaggccagt gtgcactctg tttgccgggg ggtctcatcc       960
     gagatgtgga ggaggccctt ccggcggcga cagagagcac tgggtgcacc cgactgcaaa      1020
     ttgttgctca tgtcggcacc aatgactcct gccggctggg ttcagaggtc tcctcagttc      1080
     atacaggcgg ttggcggagt tggtgaaggc tgaaagcgtc gctcgcgggg tggaatctga      1140
     gctaactatt tgtagtgtcg ttcccagaac cgatcgcggt cctctggttt ggagccgagt      1200
     ggaaggctta aaccagaggc tcagacgatt ctgcggagat ctaggctgca aatttctcga      1260
     cctccgctat cgggtggaga aatgtagggt tcccctgaat aggtcaggcg tgcactacac      1320
     gcaggaagcg gctacaaggg tagcggagta cgtgtggagt gcacatgggg gttttttagg      1380
     ttagagaatt ccctccctag gcccgacaag acgcctcctg agccgcgaca aggtagcagt      1440
     aggcagaaca caacagggaa tgaaaagatc aatgtagtag tagttaactg caggagcgtc      1500
     tatagaaagg tcccagaact gctctcatta ataaacggtc acaatgccca catagtacta      1560
     gggacggaaa gttggctgaa accagatgta aacagtaatg agattctaaa ctcagactgg      1620
     aatgtwtacc gcagagatag gctgsacagt gaagggggag gcgtgtttat agcgataaaa      1680
     agtgcactag tatcgaagga aatagacgga gatccgaagt gtgaaataat ttgggtgaag      1740
     gtcacggtta aagcaggctc gaacatggta attggatgtt tctataggcc tcctggctca      1800
     gcagctgttg tggcagaaca cctgaaggaa aatttggaaa atatttcgag tagatttccc      1860
     gatcatgtta tagttttggg aggagatttt aatttacctg atatagactg ggagacccaa      1920
     acgtttatga cgggtggcag ggacaaagaa tccagtgaaa ttgttttgag tgcattatct      1980
     gaaaactacc ttgagcagtt aaacagagaa ccgactcgtg gcgacaacat attagacctt      2040
     ctggtgacaa acagacccga actattcgaa acagttaacg cagaacaggg aatcagcgat      2100
     cataaagcgg ttacagcatc gataatttca gccgtaaata gaaatattaa aaaatgtagg      2160
     aagatttttc tgttcggaaa aagtgacaaa aagcggattt cagagtactt gacggctcaa      2220
     cacagaagtt ttatctcaag tacagatagt gttgaggaac agtggtcaaa gttcaaagcc      2280
     atcgtacaat atgcattaga tgagtatgta ccaagcaaga tcgtaagaga tggaaaggag      2340
     ccaccgtggt acaacaaccg aattagaaaa ctgctacgga agcaaaggga acttcactgc      2400
     aaacataaac atagccaaag ccttgtagac aaacaaaaat taaacgaagc gaaatgtagc      2460
     gtgaggaggg ctatgcgaga ggcgttcaac gagttcgaaa gtaaagttct ttgtactgac      2520
     ttggctgaaa atcctaagaa attttggtct tatgtcaaag cggtaggtgg atcaaaacaa      2580
     aatstccaga cactctgtga cgaaaatggc attgaaacag aggatgacac tctaaaggct      2640
     gaattactaa atgtcttttt ccaaagctgt ttcacagagg aagattgcac tgtagttcct      2700
     tctctagatt gccgcacaga ttacaaaatg gcagatatcg aaataattga cagagggata      2760
     gaaaaacaat taaaatcgct caaaagagga aaggccgcag gacctgatgg gataccagtt      2820
     cgtttttaca cagagtacgc gaaggaactt gccccccttc ttgcagtggt gtaccgtagg      2880
     tctctagaag agcgtagcgt tccgaaagat tggaaaatgg cgcaggtcat ccccgttttc      2940
     aagaagggac gtcgaacaga tgtgcagaac tataggccta tatctctaac gtcggtcagt      3000
     tgtagaattt tggaacatgt attatgttcg agtataatga catttctgga gactagaaat      3060
     ctgctctgta ggaatcagca tgggtttcga aaaaggcgat cgtgtgaaac ccagctcgcg      3120
     ctattcgtcc acgagactca gagggccata gacacgggtt ctcaggtaga tgctgtgttt      3180
     cttgacttcc gcaaggcgtt tgatacagtt ccccacagac gtttaatgaa caaagtaaga      3240
     gcatatggtc tatcagacca attgtgtgat tggattgagg agttcctaga taacagaatg      3300
     cagcatgtca ttctcaatgg agagaagtct tccgaagtaa gagtgatgtc aggtgtgcca      3360
     caggggagtg tcgtgggtcc gttgctgttc acgatatata taaatgacct tgcggataac      3420
     atcggaagtt cactgaggct ttttgcggat gatgctgtag tatatagaga ggttgtaaca      3480
     atggaaaatt gtattgaaat gcaggaggat ctgcatcgaa ttgacgcatg gtgcagggaa      3540
     tggcaattga atctcaatgt agacaagtgt aatgtgctgc gaatacatag aaagaaagat      3600
     cctttatcat ttagctacac tatagcaggt cagcaactgg aagcagttaa ttccataaat      3660
     tatctgggag taggcattag gagtgattta aaatggaacg accatataaa atcaatcgtc      3720
     ggtaaagcag atgccagact tagattcatt ggaagaatcc taaggaaatg cagtccgaaa      3780
     acaaaggaag taggttacag tacacttgtt cgcccacagc ttgaatactg ctcaccggtg      3840
     tgggatccgt accaggtggg gttgatagag gaagtagaga agatccaacg gagagcagcg      3900
     cgcttcgtta caggatcatt tggtaatcgt gaaagcgtta cggagatgat cgataaactc      3960
     cagtggaaga ctctgcagga gagacgctct gtcgctcggt acgggctttt gtcgaagttt      4020
     cgagaacata cctttaccga ggagtctagc agtatattgc tccctcctac gtatatctcg      4080
     cgaagagatc atgaggataa aatcagagag attagagccc acacagaggc ataccgacaa      4140
     tctttctttc cgcgaacaat acgtgactgg aataggaggg agaaccgata gtggtactca      4200
     aggtaccctc cgccacacac cgtcgggtgg cttgcggagt atggtgtaga tgtagagatg      4260
//
ID   CR1-1_NVi   repbase;    DNA;    INV; 4642 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4642
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 748-748 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(15..437,406..1518)
FT                 /product="CR1-1_NVi_1p"
FT                 /translation="MAGVRMPPDKCVSNFECHSNKTSTTLFCIICDAVYHF
FT                 SCLAQKTTDIKIISGNLIVCPEHSDTNLTSKIEEEGLDDATRLLIAQIKLN
FT                 KTEEVRRDLLLEVSTAEQDELDINIEGKYKLIKNENLLLKQLVSELQEKKH
FT                 TTSVNCRKKNILLREKLLNKQNESAAASFSYAEVTSFPKLLQKKVPKITVK
FT                 NVSNKAVDVKKKVIECLVTEKKIQTKNLYVNRKEELVINCLNSESAMLTES
FT                 VLKHNLEGICEVRKDTLKNPKIKIVGIDNYSNMEMEDIEDDINMRNFGSFT
FT                 NKGQVLHMYKSNFSSLTTVLMEVPADIYKFIKENKSRIFVGYQNCKVYDSI
FT                 NINPCYNCGRFGHNGNKCNNSSVCLKCAEKHKTSTCTNNAIKCLNCVFSNS
FT                 KYNTKLDVNHAANDTNQCNILKKKISIYIDSTDYPIRPTLPAVHQVYRERD
FT                 NTTDTHNPTTDNTMKQPLQELPKSTKQKHERSEAAKQQQLQQLKMARTPQQ
FT                 QAAPAKNTRLRSSKT*"
FT   CDS           join(1775..2731,2706..3575,3517..3882,3875..4393)
FT                 /product="CR1-1_NVi_2p"
FT                 /translation="LIGSNYEYESYYNDSRINRNDGVIVFVNRNLVQSTEI
FT                 VQQGRIRIVNTKINLSNNSNIEISSMYRSHGIPKTEFILDLNKYLIKKRNI
FT                 KNHLVIGDFNIDILDCDHVSQEFLCNFFDKGYIPGFVGITRPPVGIAKGSC
FT                 IDNIFIKTDNLNTITYKLKLSITDHYPIFIALNKMKIVHNKPTIVLNYKKL
FT                 INSAETRNWNEIITMQDPNLATDKLLYEIKQCIELSKMNQKRIKQVGRKNW
FT                 ITDAIIKSCETKEFLYNLWKLDINNEQLKTEYKTYSKILEKVIKDAKFRYD
FT                 KKLVEKNANNPKKLWEIINNKLGKKRVTINLAKKESNETISCIKINDIKVT
FT                 EKVEIARNMNKFFCEIGQKLSNDIVQPNNAEFRLPDINANSIFLKPTNMNE
FT                 VKNIINTLKIKNGGVDKIKAKSLKVICNYIAVPLTHIFNLCIEKAIWPDAL
FT                 KKAEIIPIYKAGEKHNITNYRPISLISNVAKIFERIIYNRLYDFIQKNNII
FT                 SKHQFGFMKNIGSKNALNYITQILYNNVDKTIPTIVTFLDLAKAFDTVDHK
FT                 LLLNKLYCIGIRGQALDLLRSYLNNRYQTVKIDGVESDSLLISMGVPQGTI
FT                 LGPLLFIYIYKVWVFHRVRYWVHSYLFIYINDVLKEIPLESILSYADDTAI
FT                 IATGNTWIEAQKSMNEFLTVIYKWLAVNKLSLNVDKTVCMTFGSYCDSVPK
FT                 XIDVRIQNXKIARVEXYKYLGIVIDXNLKWVNGYKHIQYIYNKKXKVSSLY
FT                 FSQTITXYVNRNFKNDILCXLPXHNXLWNSSLGNGAYRNNRDLLQSLQRKI
FT                 LKIINKNTFSIQDSPLNLEQVFNFESLKIHYQDLKTQFQMSTXITRKKSLI
FT                 IPKSKKRVSDKNSYNNAIIIYNXLPNELKELDISKTAAKXKIKYWIKTXT*
FT                 "
XX
SQ   Sequence 4642 BP; 1877 A; 670 C; 764 G; 1298 T; 33 other;
     aaaaagccag caacatggcg ggagtgcgga tgcctcccga taagtgtgtc tcaaattttg        60
     agtgtcatag caataaaact tcaacaacat tattttgcat catatgtgat gcagtatatc       120
     attttagttg tttagcacaa aaaacaaccg acatcaaaat cataagtggt aacttaatag       180
     tgtgcccaga acatagtgac acaaacctaa cctcaaaaat agaagaggaa ggtttagacg       240
     atgcaacaag attactgatt gcacaaataa aactgaataa aacggaagaa gtaaggagag       300
     atctactact tgaagtttca acagcagaac aggatgaact tgacatcaat attgaaggaa       360
     agtacaagct aataaaaaat gaaaacttac ttttgaaaca gctagtcagt gaattgcagg       420
     aaaaaaaaca tactacttag agaaaaattg ctaaataagc aaaatgaaag tgctgcggct       480
     agtttttcgt atgcagaagt tacaagtttt cctaaactat tacaaaagaa agtgcctaag       540
     ataactgtaa aaaatgtgag taataaagca gtggacgtca aaaagaaagt tatagagtgc       600
     ttagttactg aaaagaagat tcaaacaaaa aacttgtacg taaacagaaa agaagaactt       660
     gttatcaatt gcttgaatag tgaaagtgct atgttaactg aatctgtttt gaaacataac       720
     cttgaaggta tatgtgaggt taggaaagat acgttgaaga atcctaaaat caaaattgtc       780
     ggaatcgata actacagtaa catggaaatg gaggacatag aggatgatat aaacatgaga       840
     aattttggaa gttttactaa caaggggcaa gtactacata tgtacaaaag caatttcagt       900
     agcttaacta cagtactaat ggaggttcct gctgacatat acaaattcat caaggagaac       960
     aaaagcagga tttttgttgg ctaccaaaac tgcaaagtat atgactctat aaatataaat      1020
     ccatgttaca attgtggaag atttgggcac aacggtaaca aatgcaacaa cagttctgta      1080
     tgcctcaagt gcgcagaaaa gcacaagact agtacctgca caaacaacgc cattaagtgt      1140
     ctgaattgtg ttttttcaaa cagcaaatac aatacaaagc ttgacgtcaa ccacgctgct      1200
     aacgatacaa accagtgtaa catcctgaag aaaaaaatca gcatatacat agactctact      1260
     gactatccta ttaggcctac cttaccagcg gtacatcaag tctatcgaga acgtgataat      1320
     actacagata cacacaaccc aaccacagac aacacaatga aacagccttt acaagaacta      1380
     cctaaatcta caaaacaaaa acatgaaagg agtgaagcag ccaagcagca acaacttcaa      1440
     caattgaaga tggctagaac accacaacaa caagctgctc cagcaaaaaa tacaaggtta      1500
     agaagcagta aaacttaaat taataaaatg gatacttttg attatctaga tataatacaa      1560
     aaggattcaa tgcagaaaga aaaaaacata cagtggtatt ggcgatctaa acaagacaat      1620
     tagcaacaaa aatgatataa ttatgcactt aaatgtaaga agcatgaatg caaattttga      1680
     caaggtaaaa atattttttg aaagtctgat cgtcaaacca tctgttgttg ttctttctga      1740
     aacatttgag caggtaaatc atacattttt ttaactgatc ggaagtaact atgaatacga      1800
     gtcttactac aacgatagta ggattaatag gaatgacgga gttatagtat tcgtaaatag      1860
     aaacttggtt cagagcacag aaattgttca acagggtagg attagaattg taaatacaaa      1920
     aattaactta agtaataata gcaatattga aatctcatcc atgtacagat ctcatggcat      1980
     acctaagact gagtttatat tagatttaaa taaatatttg ataaaaaaga ggaacattaa      2040
     aaatcattta gtaataggag atttcaatat tgatatattg gattgcgatc atgtgagcca      2100
     agaattcctg tgtaatttct ttgataaagg atatattcct ggatttgttg gaattacgag      2160
     gccacctgtg ggcattgcaa agggatcctg cattgataat attttcataa aaactgataa      2220
     cttaaataca attacttata aactcaaact atctataaca gaccattacc ctatatttat      2280
     agctctcaat aaaatgaaaa tagtacataa caaaccaaca atagttttaa attataaaaa      2340
     attaataaat agtgctgaaa caagaaactg gaatgaaatt atcacaatgc aggatcctaa      2400
     tttagccaca gataagttgt tgtatgagat taaacaatgt atagagttat ccaaaatgaa      2460
     tcaaaaaagg attaaacagg tggggaggaa aaattggatc actgatgcga taattaaatc      2520
     gtgcgaaacc aaagaatttt tgtataactt atggaagttg gatataaata atgagcaact      2580
     taaaactgaa tacaaaacct attccaaaat tttagagaaa gttattaaag acgccaaatt      2640
     tagatatgat aaaaaactag tcgaaaaaaa tgcaaataac cccaaaaaac tatgggaaat      2700
     cataaacaat aaacttggca aaaaaagagt ctaatgaaac cataagttgt ataaagataa      2760
     atgatattaa agttacagag aaagttgaga tagctagaaa catgaataag tttttctgtg      2820
     agatcggcca aaaattgagt aatgatatcg tgcaacccaa taatgctgaa tttagactac      2880
     cggatattaa tgcaaactca atttttctaa aacctacaaa tatgaatgaa gtaaaaaaca      2940
     taatcaatac attgaaaata aaaaatggtg gtgtggacaa aataaaagct aagtccttaa      3000
     aagtgatttg taattatatt gcggtaccct taacgcatat ttttaatttg tgcattgaaa      3060
     aagctatatg gccagatgca ctaaaaaagg ccgaaatcat tccaatatat aaagcagggg      3120
     aaaaacataa cattaccaat tataggccca tctcactcat atctaatgtt gctaaaattt      3180
     ttgaaagaat tatctataac aggctatatg attttatcca aaaaaataac ataatatcaa      3240
     aacaccaatt tggttttatg aaaaatattg gctcaaaaaa tgctttaaac tatatcacac      3300
     aaattttgta caataatgta gataaaacga taccaacaat agtcactttt ctcgacttgg      3360
     ctaaagcttt tgatacagtt gaccayaagt tgttattaaa taaactgtat tgtattggta      3420
     ttagaggtca ggcattggat ctccttagaa gctatttgaa taacagatat caaactgtta      3480
     aaattgacgg tgtagaaagt gatagyttac taataagtat gggtgttcca cagggtacga      3540
     tactgggtcc actcctattt atttatatat ataaatgatg tkctaaagga gattccacta      3600
     gaatcaattc tatcgtacgc agatgatact gcaatwatag caacaggcaa tacrtggata      3660
     gaggcgcaaa aaagtatgaa tgagtttctt actgtgatat acaaatggtt rgcggtaaat      3720
     aagttatcty traaygtgga taaaacagtt tgtatgacat ttggaagcta ttgcgayagt      3780
     gtaccgaaac wtattgatgt aagaattcaa aataraaaga tagctagagt tgagwattac      3840
     aaatacttgg gaattgtcat tgaytwcaat ctraaatggg tataaacaca tccaatatat      3900
     atataataaa aaaracaaag tatctagtct atatttttca caaactatca cayactatgt      3960
     caacagaaac tttaagaatg atatattatg cwttcttcca yagcataaty agctatggaa      4020
     tagtagcctg gggaatggtg cmtatagaaa taaccgtgat ttattacaaa gtttacagag      4080
     aaaaattctc aagattatca acaaaaatac ttttagtata caagatagtc cattaaacct      4140
     agagcaagta tttaattttg aatcccttaa aatccattat caagatctca aaactcaatt      4200
     ccaaatgtct acaartatta ctcgaaagaa aagtttaatt atacctaaga gcaaaaaacg      4260
     agtcagtgat aaaaacagtt ataataatgc tattataatt tacaatkcac taccaaatga      4320
     gctcaaggaa ttagatataa gcaaaaccgc ggcaaaamgt aaaattaagt attggatcaa      4380
     aaccaawact tagttttcca gatagtttta aattgttaaa tttgttaaat tytaagaaaa      4440
     gaaaatgtaa tgagtgttta ttgttgttga aatkrttttg ataatgtaay tatctttagt      4500
     yttaagtact agttttaagt yttttattct tatgttatat accaagcttg tacacaggta      4560
     acttagttta cctctacaag gcttgctggt atgcgtattc ttaaggtata ctatgtaagc      4620
     tattatcttg gtttaatawa ta                                               4642
//
ID   CR1-1_PPo   repbase;    DNA;    INV; 690 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-690
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3104-3104 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..509
FT                 /product="CR1-1_PPo_1p"
FT                 /translation="AEFKNPTTYLYLYKTLVRSQLEYAVPIWNPLYNKYIK
FT                 SIEAVQEKYLRCLNYRCFHTYLSYQGLLAKFKLLSLKSRRLQHEAVLLHDL
FT                 CHNRYDCICLTRRISYRVPTRAHPRNVSKLFSTNWSRTNAGLRSPLNRIVN
FT                 SYNTNFNDIDIIHVTKNNLKIEIIKTLNYQ"
XX
SQ   Sequence 690 BP; 240 A; 125 C; 91 G; 234 T; 0 other;
     gtgcagaatt taaaaatcca accacttacc tctatttgta taaaacccta gttcgttcgc        60
     aactcgaata tgctgtgcct atttggaatc ctctctataa taaatatata aaatcaatag       120
     aagctgtaca agaaaaatat cttcgttgcc taaactatag atgttttcat acatacttat       180
     cgtatcaagg cctcctagct aaatttaaat tactaagtct caaatctaga cgacttcaac       240
     atgaagcggt gctactccac gatctgtgcc ataataggta cgactgcatc tgtttaacca       300
     gaagaatatc gtacagagtc cccacaaggg ctcatcccag aaatgtttca aaactttttt       360
     caacaaactg gtctcgaact aatgcgggct tgcggtcacc acttaatcga attgttaatt       420
     cttataatac caattttaat gatatagata tcatacatgt aactaaaaat aaccttaaaa       480
     tagagattat taaaactttg aattatcaat aatattaata tatcattaag taccactcga       540
     atgtatagcc tatttataga tttattttat tattatagtt actatgtggt aaagttgtgg       600
     atggcacatc tactcaacac ttttgaattg tactgtatat ttttttttct tgtgctattg       660
     ttcttttacc caaataaatg aaaaaaaaaa                                        690
//
ID   CR1-1_TCa   repbase;    DNA;    INV; 2416 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   04-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   CR1-type retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   CR1-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2416
RA   Jurka J.;
RT   "CR1-type retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 735-735 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           485..2296
FT                 /product="CR1-1_TCa_1p"
FT                 /translation="MALRAARKNYYGQRIQNADNKSKCAWNIVNKICGRSK
FT                 KCCEIQIEGDPKQIVNDINQYFINSAPFVRSKSNNNTISSNAKTMYXYPVT
FT                 SQEIITIIQNLKNKKSAGFDEISNNIIKYCNEEISAPLSFVIQNSLDYGIF
FT                 PEQLKRAQVLPIYKKGDPTLISNYRPISLLSSFSKIFETVISSRITNFLMK
FT                 FQLLNSSQHGYIKGKSVDSAIFSFTNALLDKLEEKKVVLGIFLDFSKAFDC
FT                 LDHNILISKLKKYGIRGIMLKLITSYLNNRYQQVTITKNSTVYTSNKLLIK
FT                 QGVPQGSILGPLFFVIYINDLLNILTVSDNNSAVNFADDTNILIWGENMTD
FT                 TMKEAKICMNKVINWTKENKLVLNFEKTYGIHFAICNHKNTEKPNKIVISS
FT                 KEIELIEKTNFLGICIDHKLSWTNHIDNLLKKLNSVHFTIRVLKKYINIEQ
FT                 LRIIYFANFQSLLSYGIIFWGQSGKISKVFVAQKQVMRTMFNLKYNETCRN
FT                 IFKSNNFLTVTGLYIYRLLLFFFKQNLLFNVTNDHKYDTRKVDLEYPRHKL
FT                 TLTEKNSYYAGIKLYNSLPVHLRTPCNLNLFKKKIFDYILDLEPYTLNEFY
FT                 NRQVF*"
XX
SQ   Sequence 2416 BP; 972 A; 336 C; 331 G; 775 T; 2 other;
     attctaagca ttgtaaaagt attttttatc atataatatg tatgaaatgg ttcaagaaaa        60
     cacaagaata accgcacgca gtaaaacaag aatagacaat gtttttacaa atatgacctt       120
     taataacttt aaaatagaag ttcttgaacc acacatatcg gatcacatgg gtatacagct       180
     aactacgagc ataaaaaata atactaataa tactgatgca gtaaaaaacg ttagaatttt       240
     aaatgtatat gcatgtaatc gcaatgatat caatgctcag tggagcaatt ttataaatat       300
     tttcaatgat aaatttaacg aatgttttcc tctaaaacaa ataaaagaaa aaaaaacaag       360
     aaaatattta taaaaatgat cctaaagtaa aatattataa atattatcta gatttgttat       420
     ctgtgataag taagtgtgac gataaatatg ttattcttta taagtatttg aaaaaaaata       480
     cgacatggct ctacgagcgg cacgtaaaaa ttactatgga caacggattc aaaatgcaga       540
     caataaatca aaatgtgctt ggaatattgt taacaaaatt tgtggcagaa gtaaaaaatg       600
     ttgtgaaatt caaatcgaag gtgatcctaa gcagattgtt aatgacatta accagtattt       660
     cattaattca gcgccctttg tacgaagtaa gtcaaataat aatacgatct catccaatgc       720
     taaaactatg tacntatacc cagttactag tcaagaaatt attactataa ttcaaaattt       780
     aaaaaataag aaaagcgcag gctttgacga aatatctaat aacataatta aatactgtaa       840
     tgaagaaatt agcgcacctt tatcttttgt tattcaaaac tctttagatt atggaatttt       900
     cccagaacaa ttaaaacgag cgcaagttct tcctatatac aaaaaaggtg acccaacatt       960
     aatatcaaat tataggccaa taagtctgct gtcatcgttt tctaaaattt ttgaaactgt      1020
     tatatcttcc agaattacta actttttaat gaaatttcag ctactgaatt catcccaaca      1080
     cgggtacatt aaagggaaat ctgttgactc agctatattt agcttcacta atgctctgtt      1140
     agataaatta gaagaaaaaa aggtggttct tggaattttc ttagatttct ccaaagcctt      1200
     cgattgccta gatcataaca tcctaataag taaattaaag aaatacggca taagaggaat      1260
     tatgttaaag ttgatcacat cttatcttaa taataggtat cagcaggtca caataacaaa      1320
     aaacagtact gtatatacat caaataaact tctaattaaa caaggtgtac ctcaaggtag      1380
     tatactaggg cctttatttt tcgtaattta tataaacgac ctattaaaca ttttaacagt      1440
     ctcagacaac aatagtgcag ttaactttgc tgatgacaca aacatattaa tttggggtga      1500
     aaatatgaca gatacaatga aagaagcaaa gatwtgcatg aataaggtaa taaactggac      1560
     taaagaaaat aaattagtgt taaattttga aaaaacctac ggcattcatt ttgcaatatg      1620
     taatcacaag aatacagaga aaccgaataa aattgtaata tcatctaaag aaattgaatt      1680
     aatagagaaa actaattttc tgggaatatg cattgaccat aagttaagct ggactaatca      1740
     tatagataat ttattaaaaa aattaaactc agtacatttt acaatacgtg ttttaaaaaa      1800
     atacattaac attgaacaac taagaataat atacttcgca aattttcaat cattactaag      1860
     ctacggtata atattttggg ggcaaagtgg aaagatatca aaagtatttg ttgctcaaaa      1920
     acaagtcatg agaactatgt ttaacttaaa atataatgaa acttgtagga acatctttaa      1980
     aagcaataac tttttgacag taactggttt atacatatat agattacttt tatttttctt      2040
     taaacagaat ctactattta atgtcactaa cgaccataag tacgacactc gcaaagtaga      2100
     cttagagtat ccaagacaca aacttacgct gacggaaaaa aattcttatt atgcaggaat      2160
     aaaactatac aatagtttac ctgtgcatct acgcacacct tgtaatttaa atttatttaa      2220
     aaagaaaata tttgactaca ttttggatct cgaaccatat actttaaatg aattctataa      2280
     tagacaggtt ttttgactta tgtcttaaaa ttatttttat gttattgtta tttctgtgta      2340
     taatactgac gtttttcgta tcaattttgt tactacatct gtataaattg atagaaataa      2400
     attattatta ttatta                                                      2416
//
ID   CR1-20_CQ   repbase;    DNA;    INV; 5074 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-20_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5074
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 24-24 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..701
FT                 /product="CR1-20_CQ_1p"
FT                 /translation="MGCKQCQKKVSDSERIICQGFCGASFHMICAKVDIPL
FT                 KDALGQRPNNAFWMCDDCAKLFXNGHFRLIAKGHDEGNSEIADAVKTMQNE
FT                 ITKLTSTVIAFTEKVAENSASTTTWPSKRPRDSETPTKVSIPSASRGTKAM
FT                 TTVPVLASAEQDDLWYIWLSSFPPSVTEDDIRLMVKECLSVDDDDPIAVKM
FT                 LVTFLH"
FT   CDS           1273..4782
FT                 /product="CR1-20_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDGSQSTDTVAPPLCCNQQHCSCRPSRPGPVFGTGNG
FT                 AIHTGNSGKYLYLPDDIARPDVLPNFSPRHATTTTAIRDIDAEHADPGRST
FT                 YRAMDDSRSTDTVVPPLCCNQQHCSCHPSRPGPVFGTGNGVIQNLFSGEYS
FT                 RSADIDACPDVSPSFSQQLSMTSQHGCSSDPPEVHPPVQLIPPNSSLKPLS
FT                 VYYQNVRGLKSKIDEFFLACSELEFDIIILIETWLDDSVTFVQLFGDEYHV
FT                 YAVNRGKKNSVRIVGGGVLIAVRRLLDSSVCKEGMVDILEQVFVTVRLAHI
FT                 NLHICAFYLPYEKRLEHNLLEKHINSVTTVCELARSEDIIIAAGDYNQSYL
FT                 VWRDDGRGYATADLAETHARLRTERASHETLLDGMAICNLRQIQTVRNANN
FT                 RILDLIFISDDESLPTVHCVEDPLVPLDSHHPAVWFEIEAVQRVAFQDDFD
FT                 PNSLNYRRTDFATMCTNLAAVDWSPVLTCTNVNDAVTQFGIIVRLHLQRLT
FT                 PRRRPPRKPPWSDAHLKWLKKIRSAALRQYSHDHCTICRRRYKKACSTYKR
FT                 YNKLRYRQYVHKTQCDLKRNPKKFWSFVKTKYKENGLPSSMVYGSRVASNS
FT                 EEKCTLFAEHFASVFNKPDVQNDIDPACLDAVPSNLVSVDTFDITRSMLRK
FT                 AIAKLKSSFVAGPDGIPAAVIKRCGSMLEVPLLKIFNMSMTEATFPEEWKK
FT                 SYMFPVFKKGEKRRVENYRGITSLCSCSKVLELIMCDYLMFNCRNYITFEQ
FT                 HGFVAGRSVTTNLMEFVTTCFNSMSEGLQVDAVYTDLKAAFDRIDHDIALM
FT                 KFAKLGFSSRICSWLESYLKGRRLQVKIGSSLSVEFSNWSGVPQGSNLGPI
FT                 GFALFYNDAGLSLHGNCKLIYADDLKLFTTIESLADCYVLQSHIDAFAEWC
FT                 RLNRMTLSIEKCMVISFHRKTKRHVFTFDYTLLNQPIQRVDCVKDLGALLD
FT                 FNLTFRQQQASVIEKANRQLGFMFRATREFDDPACLRTLYYALVRSHLETS
FT                 CIIWAPYHQNWIDRIERIQRKFVWFAARNFNWRDPSNLPPYEHRCELLGLM
FT                 TLENRRKLSKAMFAAKLLTGELDCPNLLEQLGAAVQARSLRTRSGFLHRTL
FT                 STTEYMRHSPFRSMCSIFNDFFDLFEFGESTTSFRTKLTSRLSIRGRRDNA
FT                 GENERPRRSTR"
XX
SQ   Sequence 5074 BP; 1306 A; 1303 C; 1149 G; 1311 T; 5 other;
     caggagcccc cacacaagca ctgcgaacaa tacagctagc tggacgtcat cacttgttta        60
     catccagcta cacactgccc aacttgaagt cgccctgagt ggggttgctc aaaatgggct       120
     gcaaacagtg ccagaaaaag gtctcggact ctgagcgcat catatgccaa ggwttttgcg       180
     gggccagctt ccatatgatt tgcgccaagg tggatatccc gttgaaagac gctctgggac       240
     aacgtcctaa taatgcgttt tggatgtgcg atgactgcgc gaagttattc mtgaacggtc       300
     acttccgtct cattgccaag ggacatgatg agggcaattc ggagattgct gatgctgtga       360
     agacgatgca gaatgaaatc accaaattga cttccacggt catcgcattc acmgaaaagg       420
     ttgctgaaaa ttcggcgtct acgaccacct ggcccagcaa gcgtcctagg gacagcgaaa       480
     cgcccaccaa agtcagcatc ccctccgcct cacgcggtac gaaggcaatg accacagttc       540
     ctgtcctcgc cagcgcagaa caggatgact tgtggtatat ctggctatcg agtttcccgc       600
     cgagcgtcac ggaagacgat atccgcctga tggtgaagga gtgcctgtcc gttgatgacg       660
     acgaccccat cgcggttaag atgctggtga catttctaca ctgacatcaa tcacgttcaa       720
     ggtcggagtc agtcgggatt accgcgagtc atctctggac ccgagtaact ggccagaggg       780
     cctggcattc cgggaattcg tcgacatgaa caatcgacct gcgcctagcg taactccaat       840
     ggggttctca aggcgtcggc tagattagtg tgtccacctc gctgtcgcaa actcatcact       900
     gaacctcatc acttgaccgc tgccgttcta ccatcatcgt ctcgaaacca tcctgctgct       960
     gttactgctg acccgggacg cacgttatac agaattaggg atgacccccg atccaccggc      1020
     acagtcgcgc catcgctctg cggtattcct gccaattgta cctgccatcc aagccgtccc      1080
     ggccctgtgt ccggtcgcgg aaacggggtc atccaaactg agaactcagg caagtacacg      1140
     tctcgttttg atttacttgc tcgccctgat gtcctcccaa gtttcagcca acgatctaca      1200
     ctatctacaa cgggtcactc tagcggcttc agcgacaatc aggctgaccc gggacgctcg      1260
     ttcaaaagcg acatggatgg ctcccaatcc accgacacag tcgcgccacc gctctgctgt      1320
     aatcaacaac actgttcctg ccgtccaagt cgtcccggcc ctgtgttcgg taccggaaac      1380
     ggagccatcc acactgggaa ctctggcaag tacctgtacc ttcctgatga cattgctcgc      1440
     cctgatgtac tcccgaattt cagtccacgc catgcaacaa caacaacagc gattcgcgac      1500
     attgatgctg aacatgctga cccgggacgc tcgacttatc gcgctatgga tgactcccga      1560
     tccaccgaca cagtcgtgcc accgctctgc tgcaatcaac aacactgttc ctgccatcca      1620
     agtcgtcccg gccctgtgtt cggcaccgga aacggagtca tccagaatct gttctctggc      1680
     gagtattcac gttcagctga tattgatgct tgccctgatg tgtctcccag tttcagtcaa      1740
     caactctcca tgacttcgca acacgggtgc tcgagcgacc caccggaagt tcatccgcca      1800
     gtacaactaa ttccgccgaa ctctagctta aagccgctct ctgtatatta tcagaacgtg      1860
     cgaggcctaa aaagcaaaat cgatgaattc tttcttgcct gcagcgaatt ggagtttgat      1920
     ataataatac taattgagac ttggctggat gattcggtca cttttgtgca actgtttggg      1980
     gacgaatatc atgtttacgc tgtaaatcgt ggcaagaaga acagtgtaag aatcgttgga      2040
     ggtggtgtat tgattgctgt caggcggcta ctcgattctt ccgtatgcaa agaaggaatg      2100
     gttgacatcc tcgagcaagt ttttgtcacg gtacgtttgg cacatatcaa ccttcacatt      2160
     tgtgctttct acctgccgta cgagaaacga ttggagcata atctgctgga aaagcacata      2220
     aattctgtga caacagtttg tgaacttgct cgatcwgaag acatcatcat tgcagccgga      2280
     gactacaacc aaagttatct wgtttggcgt gatgatggca gaggctacgc gacggctgat      2340
     ttagctgaaa ctcatgctcg tttacgtact gagcgtgctt cacatgaaac acttttggac      2400
     ggtatggcca tttgtaacct acgccagatc cagacggttc gcaatgccaa caaccgaatt      2460
     ctggacctta ttttcatatc agatgatgaa tcgctaccaa ctgtccattg tgttgaagat      2520
     ccactggttc ctctggactc ccaccacccc gctgtttggt ttgaaatcga ggctgtgcag      2580
     cgcgttgcat ttcaagacga ttttgaccca aattcgctca actaccggag aacagacttc      2640
     gcaacgatgt gcaccaacct ggctgccgtg gactggtcgc ccgttcttac ctgcacgaat      2700
     gttaatgatg ctgtcacaca gtttggtatt atcgttcgct tacatctgca acgtctgacg      2760
     ccacgacgtc gtccaccacg taaaccacct tggtcggacg ctcaccttaa atggttaaag      2820
     aagattcggt ctgcagcttt acgtcagtac tcccatgacc actgtaccat ttgtcggcgg      2880
     aggtacaaaa aggcatgttc aacttacaag cgttacaaca aactccggta caggcagtac      2940
     gtccacaaaa cacaatgcga tctcaagcga aacccgaaga aattctggtc atttgtaaaa      3000
     actaaataca aagagaacgg tctgccctcg tcgatggtgt acggaagtcg tgtagcgtca      3060
     aattcggaag aaaaatgtac cctgttcgct gagcacttcg cgtctgtttt taataagcca      3120
     gatgtccaga acgacattga tcctgcttgc ctcgatgctg ttccgtccaa tctcgtaagc      3180
     gtggacacgt ttgacatcac cagaagtatg ctgcgcaagg cgattgcaaa gctgaagtca      3240
     tcattcgttg ctgggcctga tggtattcct gccgctgtaa tcaaacgttg cggaagtatg      3300
     ctggaggtgc ctttgctcaa aatattcaac atgtctatga ctgaggcaac tttcccagaa      3360
     gaatggaaga agtcgtacat gttcccagtt ttcaagaaag gagaaaagcg gcgtgttgaa      3420
     aactatcgag gaataacttc actgtgctcg tgctcaaagg ttctagaact tatcatgtgt      3480
     gattatctca tgttcaactg ccgtaactat ataacttttg agcaacatgg gttcgtcgcc      3540
     ggcagatcgg ttacaacgaa cctgatggag tttgtcacca cttgtttcaa cagtatgtct      3600
     gaggggttac aagttgatgc tgtttatact gatctcaagg ccgcctttga ccgcatagac      3660
     catgatattg cactgatgaa atttgccaaa ctaggattct cgtcccgcat ttgcagctgg      3720
     ctagaatcgt acctcaaggg aagacggttg caggtgaaga ttggaagcag tttatcagta      3780
     gaattttcca attggtctgg cgttccccaa ggtagcaatc ttggaccgat cggctttgca      3840
     ctcttctaca acgatgctgg gctatcactt cacggaaatt gcaagttaat ttacgcagat      3900
     gacctcaagt tattcacaac catcgagagc cttgctgatt gttacgttct ccaatcgcac      3960
     attgatgcct tcgctgaatg gtgtcgcctt aatcgcatga cattaagcat cgaaaagtgc      4020
     atggtcatct cattccatcg caaaacgaaa cggcacgttt tcacattcga ctacacactc      4080
     ctcaaccagc ccatacagcg agtcgattgc gtgaaggatt taggagcctt gctcgatttt      4140
     aacttgacat ttcgccagca gcaagcatca gtcatcgaaa aggctaatcg ccaactcggc      4200
     ttcatgttcc gagctacccg tgagttcgac gatcccgctt gccttcgtac tctgtattat      4260
     gctctcgtac gatcccatct ggaaacctcc tgtattatct gggcacctta ccatcagaac      4320
     tggatcgaca ggatcgaacg tattcagcga aagttcgtct ggtttgctgc tagaaacttt      4380
     aactggcgtg acccttcaaa tcttcccccg tatgaacaca gatgcgagct gctggggttg      4440
     atgacgctcg agaacagacg gaagctgtcg aaagccatgt ttgctgccaa gctgctcacg      4500
     ggtgaactgg actgtcctaa ccttctcgaa caactaggcg ccgcagttca agctagatct      4560
     cttcgtactc gcagcggatt tttgcatcgt acgctcagca ctaccgagta catgcgacac      4620
     tcgccattcc gttcgatgtg ttcgatattc aacgatttct tcgacttgtt cgagtttgga      4680
     gaatcaacta catcatttcg aactaaacta acatcgagac taagcatcag gggacgacgt      4740
     gacaacgccg gggagaatga acgtcctcgt cgatctacca ggtgattacc gttccttaag      4800
     ttatgctcta cattcagtat tctaccggac cttttttttg taggtggtga tgatcgtgca      4860
     ttcgtcgttt agcgttttct gtttagtgtt tacatgctgt tttttttttt tttaattact      4920
     tgaccatttt gtactatatt gtaaagcgaa caaacaacaa caaaacttca ttaagaccat      4980
     gtggtcggat gattttaata aataaataaa taaataaata aataaataaa taaataaata      5040
     aataaataaa taaataaata aataaataaa taaa                                  5074
//
ID   CR1-21_CQ   repbase;    DNA;    INV; 4070 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-21_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4070
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 25-25 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..3867
FT                 /product="CR1-21_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSIPHSHPSAPIDSQPPRDVAGCPAAYVVGLGRTYQS
FT                 IEVGPHSSDTTEPIADTVSSAQICSSHQRRPGHVFGHGSGANQASILGKYL
FT                 RSPGTSSLPHVPVAFSDRYSSDVEFELTSRFLNGPSNDYTHLAEWAGACEL
FT                 FTSDNVPVLEGCQCPGCFLVPFTQPPRDPGGQLAPQPVTFLCFNCIQKNHE
FT                 ISVLHSPSSTRRHPSCPDPSCHALKDTGDFAAIVPSPEIADAQATQDPLPD
FT                 ILSQQDISSGLQPVAFQQVRFYYQNVRSLNNKVDEFFLACTDCEYDVILLT
FT                 ETWLDGSVKPLQLFGDLFAVYTTNRNPANSRRKVGGGVLIAVRKTLDSVVC
FT                 VEAAADNLEQIFVTIHLKNQKMFIGCFYLPSEKRYEHQLVEQHLTCIETVR
FT                 SISAPNDTIVVVGDYNQSHLVWKPLAGNRSFVDPLLTHTRGASERTTHEVL
FT                 LDGIASNNMHQSNLVCNHQNRILDLVLINDGATHSAPEAALESLVSLDNYH
FT                 PALTFEVSAALNNSYEDTLDPLGLNFRKTDFVGLQRSLGETDWSSVLTSID
FT                 VDEAVAAFGQILRSNLTRHTPGFLPARKPAWSNERLRKLKQFRASALNRYS
FT                 QRRCPETKRVFNAASSRYKAYNKRRYAEHIKRTQANLRRNPSQFWKFVKSK
FT                 YKETGLPAVMTLGETVATTNIEKCELFARHFASVFRPPGTPPTSQQHLETV
FT                 PCDLIDLDVFQITEDMLKRGIQKLKSSNSPGPDGIPPVIFKRCFNQITAPL
FT                 LRVFNLSMSQCKFPEEWKRSVMFPVFKKGAKRSVENYRGITSLCSGSKLLE
FT                 IVVGEVIMFNCRPFISSEQHGFTPGRSVTTNLMEFTNFCIENLAAGRQVDA
FT                 VYTDLKAAFDRIDHDIALQKFAKLGFSARLCRWLESYLKNRIIQVKIGTSL
FT                 SMEFSNGSGVAQGSNLGPIVFNTFFNDSNSLFNDNCNLSYADDFKIFLAID
FT                 NLPDCYRLQSRLDKFANWCALNRLELSVSKCTTISFHRKTSREVFTFEYTL
FT                 DGHALERLKVVKDLGALLDEPLSFRPQQAAVVDKANRQLGFLFRMTREFDD
FT                 PLCLRSLYCALVRSHLESSAVIWAPYHQNWIDRIERIQKKFVWFACRRMPW
FT                 TDPTRLPRYEARCNLIGLETLENRRTISKSIFAAKILTAQIDSPNLLNLLN
FT                 TQISSRDLRNRPNFLARPRVRTEFHNNSPVRSMSAAFNEMYFLFEFHEPIP
FT                 RFREKLRIEFQERTRTLLGAPRQDPVVGRLRIGRQ"
XX
SQ   Sequence 4070 BP; 1024 A; 1079 C; 919 G; 1047 T; 1 other;
     cgacaacttg gggttcctca aaaaccgtcg cgtggagtga agtgccatca gtctgcgtgg        60
     gagtacgggg gccaccgggc ccccaaacca gttaagttat tgcatgtaaa wgaatttcca       120
     aaaagtcaag aaatgtccat cccccatagc catccatccg ctccaattga ttctcaaccg       180
     ccgagggacg tcgcaggttg ccctgctgcc tacgttgttg gtctgggacg cacgtaccaa       240
     agcattgagg ttggccccca ctcctccgac actactgagc caatcgccga caccgtttcc       300
     agcgcccaga tatgttccag tcaccagaga cgtcccggcc atgtgttcgg tcatggaagt       360
     ggggccaacc aagcctccat cttaggcaag tacttgcgtt ctcccggaac ttcttcgctg       420
     cctcatgttc ccgtggcttt tagtgaccgc tactcatctg acgtggaatt cgagcttacg       480
     agtcgttttc tgaatggacc atccaatgac tacacccatc tggccgaatg ggctggcgca       540
     tgtgagctgt tcacctccga caatgtgccc gtactcgaag ggtgtcagtg ccccggctgc       600
     ttcctagtgc cttttacgca accaccgagg gatcctgggg gccagctggc cccccagcca       660
     gttacgtttt tatgttttaa ttgtattcaa aaaaatcacg aaatttccgt actccatagc       720
     cccagttcca ctcgccgcca tccgagttgt ccggaccctt cgtgccatgc gctaaaggac       780
     actggcgact tcgcggcgat cgttcctagc cccgagatag ccgatgcaca agcgacgcaa       840
     gatcctctgc cggacatcct gtcgcaacaa gacattagca gtggtctgca gccggttgcc       900
     tttcaacagg tccggttcta ttatcaaaac gttcgatcgc tgaataacaa agttgatgaa       960
     ttcttcctgg cttgtacgga ctgcgaatac gacgttatct tgctcaccga gacgtggctc      1020
     gacggtagcg tgaaaccact ccagttgttc ggcgacctgt ttgcagttta cacaacaaat      1080
     cgaaatccag ctaacagccg tcgtaaagtt gggggaggtg ttctaattgc ggtcagaaaa      1140
     acactggatt ccgtcgtctg cgtcgaggca gctgccgata atctggaaca aatttttgtg      1200
     accattcatc tcaagaatca aaaaatgttc atcggctgct tctatcttcc ctcggaaaaa      1260
     cgatatgagc atcaactggt agagcaacac ctgacctgca tcgaaactgt tcgctccatc      1320
     tccgctccaa atgacactat agtggtagtg ggtgactaca accagtctca tctcgtttgg      1380
     aagccgcttg ctgggaaccg ttcattcgtt gatcctttgt taacccacac gcggggtgca      1440
     tcggaaagaa ctacgcatga agttctgctg gatggtattg cgagtaacaa catgcaccaa      1500
     agcaatcttg tgtgtaatca ccaaaaccga attctggatt tagtactcat caacgacggt      1560
     gcgacgcact ccgcccctga agctgctcta gaatcgctcg tttcactgga caattaccat      1620
     cctgctctaa ccttcgaagt gtcggctgcg ctcaacaata gttacgaaga cactctcgac      1680
     cctcttggat taaatttccg aaaaactgat ttcgttggcc tacaacggag tttaggagaa      1740
     actgattggt cgtctgttct cacttccatc gacgttgacg aagccgtagc cgcctttggc      1800
     cagatcctgc gaagtaatct tacacgccac acgcccgggt tcttgcctgc aaggaaacct      1860
     gcttggagta atgaacgcct tcgcaagctt aagcaatttc gtgcctctgc acttaaccga      1920
     tattctcaac gccgatgtcc tgaaaccaag agggtcttca atgccgcaag ttcccgttat      1980
     aaagcttaca ataaacgccg gtacgccgaa cacattaaga ggacgcaggc gaatcttcga      2040
     cgcaatccgt cgcagttctg gaagtttgtg aaatcgaagt acaaagagac tggacttcct      2100
     gccgtgatga cgttaggaga aaccgtggct actaccaaca tcgagaaatg tgagctgttt      2160
     gcgagacact ttgcttcagt tttccggccg cctggcactc caccgacttc acaacagcat      2220
     ctagaaacag ttccatgcga tttgattgat cttgatgtgt ttcaaattac ggaggacatg      2280
     ctgaaaagag gaatacagaa attgaaatcg tcgaattctc ctggccctga cggaatcccg      2340
     ccggtgatct tcaagcgttg tttcaaccag attactgccc cactgctccg agttttcaac      2400
     ctctccatgt cgcagtgcaa gtttcctgag gagtggaaaa gatccgtaat gtttccagtg      2460
     tttaagaaag gtgcaaaacg gtcggtcgag aactacagag gaattacgtc gctgtgctct      2520
     ggttcaaaac ttctcgagat cgtggtcggg gaagtcatca tgtttaactg ccgaccgttc      2580
     atcagttctg agcagcatgg atttacacct ggtcgctccg tcactactaa tttgatggaa      2640
     tttaccaatt tctgcattga aaatctggca gctgggcgtc aagtggatgc tgtctacacc      2700
     gacttgaaag ccgcattcga tcgaattgac cacgacattg cccttcaaaa atttgcaaaa      2760
     ctcggtttct ctgcacgtct ttgtcgctgg cttgagtctt atctcaaaaa tcggatcatt      2820
     caggtgaaaa ttggaacatc gctgtcgatg gagttctcca acggttcagg agtggcacag      2880
     ggtagcaacc tcggcccgat tgttttcaac actttcttca acgactccaa ctctctcttc      2940
     aacgacaact gcaatctctc gtatgctgat gacttcaaga tcttcctcgc tattgacaac      3000
     ttacctgatt gctacagact gcagtcccgc ctagacaaat ttgccaactg gtgtgcgttg      3060
     aatcgtttgg agctgagcgt ctctaaatgc actacgatat cgtttcatcg caagaccagc      3120
     cgggaggttt ttacatttga atacacactg gatggacacg cgctcgaacg tctgaaagta      3180
     gtgaaagatc taggagctct actagacgaa cccttatctt ttcgcccaca acaagcagca      3240
     gtcgtggaca aggccaacag acagctcggt tttctgttta gaatgacccg cgaattcgac      3300
     gaccccctct gtttacgctc gttgtactgc gcgctagtcc gctcacacct ggaatcatcg      3360
     gcagttatat gggctcccta ccaccagaac tggatcgatc gtatcgaaag gatccagaaa      3420
     aagtttgtct ggtttgcctg taggagaatg ccatggacgg acccaactag actaccacgt      3480
     tacgaggcac gctgtaacct gattggactc gagaccctgg aaaatcgtcg gacaatatcg      3540
     aaatctatct tcgctgctaa aatactgact gcgcaaatcg actcccccaa tctgttaaac      3600
     ttacttaata cccaaatttc ttctagggac ctgcgaaatc gtccaaactt cctcgcacga      3660
     ccgcgtgtca ggaccgagtt ccacaacaac tcaccagttc gatcgatgtc ggcggcgttc      3720
     aacgaaatgt acttcctgtt tgaatttcac gagcccattc caagatttcg cgaaaaacta      3780
     cgcatcgagt tccaggagcg tacaagaact ttgcttggtg cgcctcgcca ggatcccgtc      3840
     gttggccggt tacgcatagg acgacaatga cttgactaat ttttaaaatg tattgtaatt      3900
     taccacgtat gttgtcatgt tatcaatctc gatgtaattt attttaaaag aagtgaggtt      3960
     ttgtgccttt gtgagaatga ttctaatgtt tcaactcaca tcggcttttg ccctcgccaa      4020
     ccaaaacatc catgtagacc cttggttcga tggattaata ataaataata                 4070
//
ID   CR1-22_CQ   repbase;    DNA;    INV; 4654 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-22_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4654
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 26-26 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..717
FT                 /product="CR1-22_CQ_1p"
FT                 /translation="MICAKVDVPLREQLDLNQTQVFWXCGECAKLFSNSHF
FT                 RRVVKDHDGGNSEIAESMKTMQNDIANLTSTITDLKEXVQTQSTSLSTPXW
FT                 PNKRQRGSSTDTPVKVAIPTASRGTKAMNSVPVIAAEPNDLWYLWLSSFPP
FT                 SVTDEDIHSMVKECLSVEDDDPIVVKMLVKKGVDVSTLSSVTFKVGIGRDY
FT                 RESSMDAANWPEGLSFREFVDIDRRPAPTVLPSGFSRRRLE"
FT   CDS           789..4508
FT                 /product="CR1-22_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEAPNHPVTVEFPASDQHSRPGPVFGCREGVFQATFT
FT                 GEYHPLSDLSCPYSPSTSSVQPCHWFALHGTTSHIAALSSPGRMLYGRKEA
FT                 PKRSDAVAFPASDQHSRPGPAFRCREGVFQPTFRGQYPITSSNDCFDLDIF
FT                 SDSSQSPEPGRDPNQDSHLTIRPSPGRTVYGTMEAPDHSVTVEFPASGQHS
FT                 RPGPVFGDREGVFQAAPTGEYRSNQVTSCSENSSAFSSRPSTSHQHDRAAR
FT                 EPFTESQAPTPPSSTDTNASGTCQQIRFYYQNVRGLKSKVDEFFLNCLDCD
FT                 YDVIMLTETWLDDSINAVQLFGNAFEVFSTHRNAGNSRRTVGGGVLIAVRK
FT                 SLDSTVCAEAAAVNLEQIFVKIQLKTQKVFVGCFYLPSEKRYEHQLVEDHI
FT                 TCIESVAGLADPSDYIVVAGDYNQSNLVWKALSGNRSFADPLHTHTRCRME
FT                 KTTHEVLIDGVARNSLHQCNLVPNHQNRILDLIFISDGAERTAVSEANDSL
FT                 VPLDRYHPALVFDLSAVLDAEFEDVHDPLDLNFRKTDFSELIRSLENTDWT
FT                 SVLGSSDVDAAVDIFGSVVRELLARHTPCRRPPRKPAWSNASLRELKRQRA
FT                 AALERYTQHRGPITQAVFKAASSRYKSYNKRCYKSYIRKTQENLRRNPSQF
FT                 WSFAKSKYQENGLPSTMVLGETVAKTNAEKCTLFAQHFASVFQQPGPAPAS
FT                 EQHLELVPRDVVDIDVFVASKDMLKRASLKLKSSNAPGPDGIPSVVLKRCF
FT                 EQLSEPLLKIVNLSLQQSKFPTAWKKSVMFPVFKKGAKRLIGNYRGITSLC
FT                 AGSKLLEIVVGEVISFNCRSFICPEQHGFMPGRSVTSNLMEFTNFCIENIA
FT                 AGRQVDAVYTDLKAAFDRLDHTIVLQKLAKLGFSSRMCRWLESFLKERIIQ
FT                 VKIGTSLSAEFSNGSGVAQGSNLGPLVFTVFFNDSNALFVDKCKLLYADDF
FT                 KIFLAIDNLADCYGLQSRLDKFSNWCDVNRLELSVQKCTTISFHRKTRREV
FT                 FSFDYSLGGHVLERLEVVKDLGVLLDEKLTFRQHLSAIVDKAYRQLGFLFR
FT                 MAREFDDPLCLRSLYFALVRSHLEYSSVIWSPYHQNWIDRIERIQKKFVWY
FT                 ACRKMPWNDPTRLPSYEARCNLLGIETLETRRTIAKAVFAAKILTAEIDCP
FT                 HLLSLLNTNISSRNLRPRADQGLLARSFARTDYQRNSPVRSISDAFNDAYR
FT                 FFEFHEPVSKFREKLRAEFKERTRIRLSRN"
XX
SQ   Sequence 4654 BP; 1159 A; 1260 C; 1107 G; 1125 T; 3 other;
     gggtattgcg gagcaatttt ccacatgatt tgcgccaagg tggacgtccc gctgcgggaa        60
     cagctggatt tgaaccagac gcaagtattc tggatktgtg gggaatgtgc caaattgttc       120
     tccaacagtc acttccgccg cgtcgttaag gaccacgatg ggggcaactc ggagattgcc       180
     gagtcgatga aaacaatgca gaacgacatc gcgaatctta cgtcgacgat taccgacctg       240
     aaggagawag tccagaccca atcgacatca ttgtccacac ccwcgtggcc aaacaaacga       300
     cagcgcggct ccagcacaga tactcccgtg aaggtcgcta ttccaaccgc ctctcgcgga       360
     acgaaggcta tgaattcagt tccagtaatc gcagctgagc cgaacgacct gtggtacctg       420
     tggctctcca gtttcccccc gagtgtcacg gatgaggaca tacactcgat ggtgaaagag       480
     tgtctctccg tcgaagacga cgatcccatc gtcgtaaaga tgctcgtgaa gaagggtgtc       540
     gacgtttcca cactctcgtc ggtgacgttc aaagtcggaa tcggccggga ctaccgtgaa       600
     tcgtccatgg atgcagccaa ctggccggaa ggactgtctt tccgcgagtt cgtggacatc       660
     gaccgtagac cagcgcccac cgtattgcca tcggggtttt cgaggcgccg cctggaataa       720
     tctcgcaacg tcgtagtcag ccatcatttg ccgctctgcc atcaccggga cgcctgttag       780
     aaagacctat ggaagccccc aatcaccccg tcacagtcga gttcccagcc agcgaccagc       840
     acagccgtcc cgggcctgtg ttcgggtgtc gggagggggt cttccaggcc acattcacag       900
     gcgagtacca tccgttatca gatttatcgt gcccttacag tccttcgact tccagcgtgc       960
     agccatgcca ctggtttgcc ttacacggaa cgacttctca tattgctgcc ttgtcatcac      1020
     cgggacgcat gttatatggt cgtaaggaag cccccaaacg ctctgacgca gtcgcgttcc      1080
     cagccagcga ccagcacagc cgtcccggac ctgcgttcag atgtcgtgag ggggtcttcc      1140
     aacctacttt cagaggccag tatccaatca ccagctcgaa tgactgtttc gaccttgaca      1200
     ttttctcgga ttccagccaa agtcctgaac caggtcgtga cccaaaccaa gacagccacc      1260
     tgacgatacg accatcaccg ggacgcacgg tatacggcac tatggaagcc cccgatcact      1320
     ccgtcacagt cgagttccca gccagcggcc agcacagccg tcccggtcct gtgttcggag      1380
     atcgagaggg ggtcttccaa gccgccccca caggcgagta ccgttcaaat caagtgactt      1440
     cttgctctga aaattcttca gctttcagtt ctcggccgag tacaagtcac cagcatgaca      1500
     gagctgcccg tgagcctttc acggaatcgc aggctcccac cccgccttcg tcaacagaca      1560
     ccaatgctag tggaacgtgt cagcagatcc ggttctacta ccagaacgta cgaggattaa      1620
     aaagtaaagt ggacgagttt ttcctgaatt gccttgattg cgactacgac gtcattatgc      1680
     tgaccgaaac ctggctggac gactcaataa atgctgtgca gctgtttgga aatgcttttg      1740
     aagtgttttc tactcatcgc aacgccggaa acagccgtcg taccgtgggt ggcggtgtac      1800
     tcatagctgt ccggaagtcc ttggattcga ctgtatgcgc tgaagctgct gctgttaatc      1860
     tagaacaaat cttcgtcaaa attcagctga agacgcagaa ggtttttgtc ggctgtttct      1920
     atctaccttc tgaaaaacgc tacgaacatc aattggtaga ggatcacata acctgcattg      1980
     aatccgttgc tggactcgct gatccaagcg attacattgt ggtcgccgga gattacaatc      2040
     agtccaatct ggtttggaag gcgctatccg gcaatcgctc gttcgccgac cccctgcaca      2100
     cgcacacgcg ctgtcggatg gaaaaaacaa cacatgaagt gctaatcgat ggtgtcgcta      2160
     gaaacagctt gcatcaatgc aatctcgtac ccaatcatca gaacagaatc cttgacctta      2220
     tcttcatcag tgatggcgct gaacgcactg cagtgtctga agcgaacgac tctctagttc      2280
     ctctagatag gtatcaccct gcactggttt tcgatctctc cgctgttttg gacgcagaat      2340
     tcgaagacgt tcacgacccc ctcgatctga acttccggaa gacagacttc agcgagctga      2400
     ttcggagctt ggaaaacact gactggacaa gtgttttagg atcttcagat gttgatgcag      2460
     cagttgatat cttcggatct gtcgtacgag aacttctcgc gaggcacacc ccctgccggc      2520
     gacctcctcg aaaaccggct tggagcaacg cgagtttgcg cgaactcaaa aggcaacgag      2580
     ctgctgccct cgagcgatac acccagcacc gcggaccgat tacacaagct gtgtttaaag      2640
     ctgccagctc ccgatacaaa tcttacaaca agcgctgcta caaaagctac atccgaaaaa      2700
     cacaagaaaa tcttcgccgc aacccgtcgc agttctggtc ctttgcaaaa tctaaatatc      2760
     aagaaaatgg actgccctct actatggttt taggagagac tgtagccaaa acgaacgccg      2820
     aaaagtgcac ccttttcgcc caacactttg catctgtttt tcaacaacct ggtccagcac      2880
     ctgcctctga acagcatctg gaactggtac cgcgcgacgt agtggacatc gatgttttcg      2940
     tcgcttccaa ggacatgtta aaacgtgcat cgctgaaact aaagtcgtcg aacgcgccag      3000
     gacctgacgg catcccatcg gtagtgctca agcgctgttt cgaacaactg tcggagccgc      3060
     ttttgaaaat tgtgaacctg tccttgcaac aatccaagtt tccaactgca tggaagaaat      3120
     cagtgatgtt tccggtgttt aaaaagggtg caaaacgatt gattgggaat tacagaggaa      3180
     tcacttctct ctgcgctgga tcgaagcttt tagaaattgt tgttggtgaa gtcatctctt      3240
     tcaattgccg cagcttcatc tgtcccgagc aacacggatt tatgccagga agatctgtca      3300
     cttcaaacct gatggaattt acaaacttct gcatcgagaa tattgcggcg ggtcgacaag      3360
     tagatgcagt ttacactgat ttgaaggcag cttttgaccg cttggaccat accatcgtgc      3420
     tccagaaact tgctaagctc ggattctcat ctcgcatgtg tcgctggctg gaatcattcc      3480
     tcaaagaacg gataatccaa gtaaagattg gtacatcgct gtcagccgag ttttctaacg      3540
     gatcgggtgt cgcacaagga agcaaccttg gcccacttgt gttcactgtg ttcttcaacg      3600
     actccaacgc cctttttgtc gacaaatgca agctcctgta tgctgacgac ttcaaaattt      3660
     tcttggccat cgacaacctc gctgattgct acggtcttca gtctcgcctc gacaagttct      3720
     ctaactggtg tgacgtgaac cgcttggaac tcagcgtgca gaagtgcaca actatttcct      3780
     ttcaccggaa aacaaggcgc gaggtgtttt cgtttgatta ctcgctaggt gggcacgtgc      3840
     tcgagcggct cgaagtcgtg aaagaccttg gggtcctact tgacgaaaag cttaccttcc      3900
     ggcagcatct atcagcaata gtagacaagg cttatagaca gctcgggttt ctgttcagaa      3960
     tggcgcgtga attcgatgac ccgctctgcc ttcggtcgtt gtactttgcc ttggtcaggt      4020
     cccatttgga atattcgtcc gtaatctggt ctccttatca tcaaaactgg attgaccgta      4080
     tcgagagaat ccagaagaag ttcgtgtggt acgcctgcag aaaaatgccc tggaacgacc      4140
     ctacacgact gccgagctac gaagcacgct gcaacctgct tggcatcgaa acactggaga      4200
     cgcgacgaac cattgcgaaa gctgtcttcg ctgctaagat cctgaccgct gaaattgatt      4260
     gcccacatct tttatcccta ctaaatacaa atatttcttc cagaaatctg cgtcctcgag      4320
     ctgaccaggg gcttctcgca cgctcgttcg caaggacaga ctatcagcgc aactctcccg      4380
     tgaggtccat ttctgacgct tttaacgacg cctacaggtt tttcgaattt cacgaacccg      4440
     tgagcaagtt ccgcgaaaag ctgcgcgccg agttcaagga gaggacacga attcgtttaa      4500
     gtagaaacta aaatgacaat tttttaacgc gttgtaaatt atgtttgtat tgtgctacct      4560
     gtaattgtaa tttattttat ttgtaagagc atcgagcaat acccaaccat ttagaccatt      4620
     taggtccgat gggttaataa acaattcaat tcaa                                  4654
//
ID   CR1-23_CQ   repbase;    DNA;    INV; 2144 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-23_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2144
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 27-27 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1912
FT                 /product="CR1-23_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ALKKLKSSKRAALKKFSKCPISVNRLNLNQISNDYRR
FT                 LNKSLFLAHQSRVQNRLKQNPKGFWKFVNEQRKESGLPSTMIRDGVEVSTS
FT                 SEICDAFRVQFSSVFADNNLSDPDVAAAADSVPDSGLVCSDLQVSREDFNA
FT                 ACSKLKSSTSPGPDGVPAIVIKKCANSLSEPLLRIFNLSLSLGVFPNNWKE
FT                 SYVFPVFKKGCKQDVKNYRGIAALCAVSKLFEVIVLEFLRHNLSHVVSDDQ
FT                 HGFFPKRSTNTNLVTYISKIQRAISDGYQVDAIYTDLSAAFDKINHRIAIA
FT                 KLRRVGLHGSLLTWVNSYLTGRTMLVKISDNLSLPFSVTSGVPQGSHLGPF
FT                 LFLLYINDVNFLLRCPKLCYADDFKLYAIIKRPTDMEDLQAQVDLFADWCR
FT                 LNQMVLNPSKCSTITFTRKRCPTFFSYKILGNPLTRDSFVKDLGVLLDSKL
FT                 SFKNHISYLCSKASKQLGMIFRMTKYFRDVNCLKILYLSLVRSTLEYGSVV
FT                 WAPYYHNDIGRIEAIQRKFTRFALRHLGECPNYETRCSMLHLDPLSVRREA
FT                 AKAFFVADLFRSNINCPFLTSELNVNIRRRVLRSHSFLVIPGARTNYAFNE
FT                 PVSSMCRVFERCYPFFDFHLSRPRLKHDIXNFLREAYVF"
XX
SQ   Sequence 2144 BP; 532 A; 485 C; 419 G; 704 T; 4 other;
     agccctcaaa aagctgaaat cctccaagag agctgccttg aaaaagtttt ccaagtgccc        60
     tattagtgtc aatcgcttaa atttgaatca gatcagcaac gactacaggc ggttgaataa       120
     gtcactgttc ctcgctcacc aatctcgtgt tcagaaccgc ctcaaacaaa atcctaaagg       180
     cttctggaag ttcgtaaatg agcaacgaaa ggagtctggt cttccgtcaa ctatgatccg       240
     tgacggggtg gaagtctcaa cctcatctga gatttgtgat gccttccgtg tccaattttc       300
     gagcgttttt gctgacaaca acctaagcga ccctgatgtt gctgcggcag ctgactcggt       360
     tcctgattcc ggtcttgtct gctccgacct tcaagtctct cgggaggact ttaatgcagc       420
     gtgttcgaaa ttgaaaagtt ccacgtcccc cggacctgac ggagttcccg caatcgttat       480
     caaaaagtgt gcaaatagcc tctcggagcc actccttcga atctttaatt tatcactttc       540
     tcttggagtt ttccccaata actggaagga gtcatatgtg ttcccagtgt ttaaaaaggg       600
     ttgcaagcaa gacgttaaaa actatcgcgg tattgccgcc ctctgtgcag tctccaagtt       660
     gtttgaagtg attgttttgg agtttcttcg ccacaactta tcgcacgtcg tctccgatga       720
     ccaacacggg tttttcccta aacgttccac caatacgaat cttgtcactt acatttccaa       780
     gatccaacgt gcgattagcg atggctatca agtcgacgcc atctatactg acctttctgc       840
     ggcatttgac aaaattaacc accgtatagc aattgcgaaa cttcgccgtg ttggcctaca       900
     cggttctttg cttacgtggg ttaactccta cctgaccgga agaactatgt tggttaaaat       960
     ctccgataac ttgtctttac cattttctgt tacctcgggt gttccacagg gaagccattt      1020
     agggccgttt cttttcctgt tgtatatcaa tgatgtcaat ttcctgcttc gctgtcctaa      1080
     actatgctac gctgacgatt ttaaattgta tgctataatt aagaggccta ctgatatgga      1140
     agatttgcaa gctcaggttg atttatttgc tgactggtgc cgcttgaatc agatggttct      1200
     caatccttct aaatgttcga caattacatt cacccgtaaa cgctgcccaa cgtttttcag      1260
     ttacaaaatt cttggtaacc cacttactcg tgactctttt gtcaaggatt taggcgtgtt      1320
     gttggattcg aagctttctt ttaaaaatca catttcctat ttgtgctcga aggcttctaa      1380
     acagctagga atgattttta gaatgaccaa atattttcgc gacgtcaatt gcctaaaaat      1440
     tctctatctt tccttagttc gctccaccct agagtacggt tcagttgtgt gggctccata      1500
     ttatcataat gacattggac gaatcgaagc gattcaacgt aaatttacaa gatttgctct      1560
     aagacatctt ggtgagtgtc caaattacga aactcgttgc tctatgctcc accttgatcc      1620
     tttgagtgtt cgtagagaag ctgctaaagc cttttttgtt gctgaccttt tccgatcaaa      1680
     catcaactgc ccttttctta cgagtgaact gaacgtcaac attagacgcc gggtgcttcg      1740
     ctcacactct tttctcgtta tacctggagc ccgtacaaat tatgcsttca acgaacctgt      1800
     ttctagtatg tgcagggttt ttgaacgttg ttaccccttt ttcgatttcc atttgtctcg      1860
     tccccgtctg aagcacgata ttttkaattt tctcagggaa gcwtatgtgt tttgacaaag      1920
     gtttagaccg gtttattttt agtcagtttt atttatttat ttatttattt tttacattgt      1980
     gctagtttag tttgwtagct taagtttgat tgtatatatc ctctatgtca tttggattgt      2040
     aaaatctgtt gataataaaa aagaggtttt gtgcctattt gagaaggacc catcggtagg      2100
     cgttccactc aaacgggctt ttccctcata taaaacataa aaca                       2144
//
ID   CR1-24_CQ   repbase;    DNA;    INV; 4297 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-24_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4297
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 28-28 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..4164
FT                 /product="CR1-24_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEDPRLSVTVVPPHSRNXAXCTSHPSRPGPVFGPRRG
FT                 VFQNRSVGKYPYAENDLVSLPDARLTSSNVSTNESIRQDSAYRSQDAASQQ
FT                 SNDNADPGRPPTCYMEDLRLSVTVVPPHSRNYAFCTSHPSRPGPVFGPRRG
FT                 VFQNRSVGKYPYAENDLVSLPDARLTSSNVSTNESIRQDSAYRSQDAASQQ
FT                 SNDNADPGRPPTCYMEDLRLSVTVVPPHSRKYAFCSSHPSRPGPVFGPRRG
FT                 VFQNHLVGKYPYAENDLVSLPDAHLTSSNVSTNESLRPDSAYRSQDAASQQ
FT                 STDNADPGRPPIRIMEDPDPPDTVVPPHCCDSSRSGHQSRPGPVFGSREGV
FT                 FQTPNAGKYQAAFQVGYALDPDPRLLSSDVQTTPVHSDDPTTPVHHDNRRS
FT                 SAGQPVIFEPIRFYYQNVRGLNTKVDDFFLSCCDCDHDVILLTETWLDGRV
FT                 TSAQLFGNNFSVYHTYRNPANSKRKVGGGVLIAVRNSLDSVECVQAVAENL
FT                 EQMFVTIRTPSKRIFVGCWYLPPEKRFETELMEKHLSCIENIRRIAGPHDV
FT                 IVVAGDYNQGSLVWKHLSGNRSYVDPQLTRTRTEKERLTHGVMLDGMANCN
FT                 MHQCNLVKNDRNRILDLIFVSDDDCTVVAAADEPLVPLDAPHPALVFDIDA
FT                 SRTVFVQVDNNDRVLNYKRTNFDELQRTLADVDWTPVTSAMDVDTAVREFS
FT                 NLLNFHLAQHTPQFRTPPKPEWSNARLKRLKKERAAALKTFTLRRCRMTKL
FT                 AFNAASSRYRRYNRYRYNVYIRKTQSQLRRNPKKFWTFVKSKYKERGLPAT
FT                 MALGDSTATTNDEKCELFARHFSSVFREPEIISSTHHLDAVPRDLVDINTF
FT                 VISRDMIEKATKKLKSSFSPGPDGIPSAVLKRCANQLIEPLLVIFNLSLRQ
FT                 ATFPTAWKKSFMFPIFKKGSKRSIENYRGITSLCSGSKLLEIIVSDVILFN
FT                 CRSYVAPEQHGFMPKRSVNTNLLEFTSFCIDNIAEGRQVDAIYTDLKAAFD
FT                 RIDHDIALQKFSKLGFSPMLCRWLESYLKGRIIQVKIGASVSLEFTNGSGV
FT                 AQGSNLGPIVFSGFFNDANFLFSGNCKLSYADDFKLFIPIDTLADCYVLQS
FT                 RLDKFSEWCGHNRLELSSAKCYVISFNRKQSRELFTFDYHLGSHVLERLEV
FT                 VKDLGVLLDLKLDFHLQLSSVIDKANRKLGFMFKAAQEFDDPLCLRTLYCA
FT                 LVRSHLETSAVVWAPYHQNWIDRIERVQRKFVWFALRRLPWNNPAQLPSYE
FT                 TRCNLLGIETLQNRRTISRAVFAAKVITSEIDSPNLLFQLNARVQPRNLRP
FT                 TPGFLSRPLVRTVYAENSPIRALATAFNEFYHLFDFHEPVSRFLERLRTEL
FT                 RDRSRSSRPAENPQQRASRTRRSSR"
XX
SQ   Sequence 4297 BP; 1059 A; 1213 C; 954 G; 1069 T; 2 other;
     atggaagatc cccgcctctc cgtcacggtc gtgccaccgc attcccgcaa ttwcgcctwt        60
     tgtacgagcc atccaagtcg tcccggcccc gtgttcggtc caaggcgtgg ggtcttccaa       120
     aatcgatccg taggcaagta cccgtatgcc gaaaatgatc tcgtctcgct ccctgatgcc       180
     cgcttaactt ccagcaacgt ttcaacaaac gagtcgattc gtcaggattc cgcgtatcgc       240
     agtcaggatg cagcttctca acagtcgaat gacaacgctg acccgggacg cccgcctaca       300
     tgctacatgg aagatctccg cctctccgtc acggtcgtgc caccgcattc ccgcaattac       360
     gccttttgta cgagccatcc aagtcgtccc ggccccgtgt tcggtccaag gcgtggggtc       420
     ttccaaaatc gatccgtagg caagtacccg tatgccgaaa atgatctcgt ctcgctccct       480
     gatgcccgct taacttccag caacgtttca acaaacgagt cgattcgtca ggattccgcg       540
     tatcgcagtc aggatgcagc ttctcaacag tcgaatgaca acgctgaccc gggacgcccg       600
     cctacatgct acatggaaga tctccgcctc tccgtcacgg tcgtgccacc gcattcccgc       660
     aaatacgcct tttgttcgag ccatccaagt cgtcccggcc ccgtgttcgg tccaaggcgt       720
     ggggtcttcc aaaatcacct cgtaggcaag tacccgtatg ctgaaaatga tctcgtctcg       780
     ctccctgatg cccacttaac ttccagcaac gtttcaacaa acgagtcgct tcgtccggat       840
     tccgcgtatc gcagtcagga tgcagcttct caacaatcga ccgacaatgc tgacccggga       900
     cgcccgccca tccgcatcat ggaagacccc gaccctcccg acacagtcgt gccaccgcac       960
     tgctgcgact catcacgttc cggccatcaa agtcgtcccg gccctgtgtt cggctctagg      1020
     gaaggggtct tccaaacacc aaacgcaggc aagtaccaag ctgcttttca agtcggttac      1080
     gcgctggacc ctgatccccg cttgctttcc agcgacgttc agacgacgcc cgtacacagc      1140
     gacgatccga cgacacccgt acaccacgac aatcgacgtt ccagtgctgg tcaacccgtt      1200
     atcttcgaac ctatccgttt ctactaccag aatgtacggg gtctgaatac gaaggtcgac      1260
     gatttcttcc tgtcatgctg cgactgtgat catgacgtaa ttctcctaac cgaaacctgg      1320
     cttgatggtc gagtcacctc ggcccaactg tttggtaaca atttctctgt ctaccataca      1380
     taccggaatc ctgcaaacag taagcgaaaa gtcgggggcg gtgtccttat cgccgtgcga      1440
     aattctctcg attctgttga atgcgtccaa gctgtagccg agaatcttga acagatgttc      1500
     gtcacaattc gcactccgag taagagaatt ttcgtcggct gctggtatct tcccccagag      1560
     aagcgttttg agaccgagct gatggagaag catcttagct gcatcgaaaa catacgtcgt      1620
     atcgccggac cgcatgacgt cattgttgtt gcaggtgact acaaccaagg aagcctagtc      1680
     tggaagcacc tttctggtaa ccgatcctac gtcgatccgc agctcacgcg tactagaacc      1740
     gagaaagaac gactcacgca cggagtaatg ttagatggaa tggctaactg caacatgcat      1800
     caatgcaatc tggtgaaaaa cgatcgtaac cgcatcctag atctgatatt tgtcagtgac      1860
     gacgactgca ccgtagttgc tgctgctgac gagccactcg tgcctctgga cgccccccat      1920
     ccagcgctgg tgtttgacat tgacgcatct aggaccgtgt ttgtacaggt agacaacaac      1980
     gaccgggtat tgaactacaa acgaactaac ttcgacgaac tgcaaaggac tctggcggat      2040
     gttgactgga ccccagttac ctctgccatg gacgtagaca cagctgttcg ggaattttca      2100
     aacctattga attttcatct tgcccaacac actcctcaat tcagaactcc gcctaaaccc      2160
     gaatggtcga acgctcgtct taaacgcctg aaaaaagaac gtgccgctgc actgaaaacg      2220
     ttcaccctgc gccgctgccg tatgacgaaa ctggccttca acgccgctag ttcccgttac      2280
     cgccgataca atcgttacag gtacaacgtc tacatccgta agacccaatc gcaactgcgg      2340
     cgaaatccca agaaattctg gacttttgta aaatcgaagt acaaggaacg tggccttcct      2400
     gcaacgatgg cgttgggcga ttcgactgca actacaaacg acgagaaatg cgaactattt      2460
     gccagacact tttcgtccgt attccgggag cccgaaatca tttcttccac tcatcatctt      2520
     gacgctgttc cccgtgatct ggtcgacatc aacacgtttg tcatttcgcg tgacatgatc      2580
     gagaaggcga cgaagaagtt gaagtcatca ttctcaccag gacccgacgg aatcccttct      2640
     gctgttctca agcgctgtgc aaatcaactg atcgagccac ttttggttat atttaacctt      2700
     tccttgcgtc aagccacatt tccaacagca tggaagaaat ctttcatgtt tccaattttc      2760
     aagaaaggtt caaagcgttc cattgaaaac tatcgaggga tcacgtcttt gtgttccggt      2820
     tctaagcttc tagaaattat cgtcagcgat gtgatcctgt ttaactgtcg aagttacgtt      2880
     gcaccggaac aacatgggtt tatgccgaag agatcggtga acactaacct gctcgagttt      2940
     acatcgttct gcattgataa cattgccgag ggacgccaag tcgatgcaat ctacacggac      3000
     ctgaaagctg cttttgatcg gattgaccac gatattgcac tacaaaagtt ctccaaactg      3060
     ggtttctcgc cgatgctatg ccgttggctt gaatcttatc tcaagggtag aatcatccag      3120
     gtgaagatcg gcgcatccgt ttcactggaa tttaccaacg gctccggcgt ggctcagggg      3180
     agcaacctcg gcccaatagt tttttccggg ttcttcaacg acgccaattt cctgtttagc      3240
     ggaaactgta agctatccta cgctgacgac ttcaagctgt tcatccctat cgacacgttg      3300
     gccgactgtt acgtgctaca atcaaggctg gacaaattct cggagtggtg cgggcacaac      3360
     cgcctggaac tcagctccgc aaaatgctac gtcatatcct tcaaccggaa acaaagtcga      3420
     gaattgttca cattcgatta ccatctcggt tctcacgtgc tggaacgcct agaagttgtc      3480
     aaagatttgg gtgtacttct tgacctgaaa ttggattttc acctgcaact atcttccgta      3540
     attgacaaag ccaaccggaa acttggtttt atgttcaagg ctgctcaaga atttgacgat      3600
     ccgttatgtc ttaggacatt gtactgtgct cttgtgagat cgcaccttga gacgtcagca      3660
     gttgtctggg caccctatca ccagaattgg atcgatcgca ttgaacgtgt acaaaggaaa      3720
     ttcgtctggt ttgctctgag acgcctcccg tggaataatc ctgctcagtt accaagctac      3780
     gaaactcggt gcaacctgct tggaatagag acgctccaaa accggcgaac aatctcaagg      3840
     gctgtattcg ctgcgaaagt tattacctct gaaatcgact cccctaatct tcttttccag      3900
     ttaaatgcca gagtgcagcc aaggaatcta cgcccaaccc ctggattcct ctcacgcccg      3960
     ttggtccgta cggtttatgc ggaaaactcc cctattcgtg cgctggccac agctttcaac      4020
     gagttctacc atctgttcga cttccacgaa cctgtgagcc gatttttgga aagacttcga      4080
     actgaactcc gagatcgttc tcgttcatct cgtcctgctg aaaacccgca acaacgtgca      4140
     tcaagaacaa gaagatctag ccgttaaatc atgttttgtt taaatttatg ttttgataac      4200
     ttgactatat ttatgtttgt aaagttctta ttagttttaa gcaaccaaac ttcattgaga      4260
     ccaccgggtc agatgatttc aaataaacaa atcaaac                               4297
//
ID   CR1-25_CQ   repbase;    DNA;    INV; 4236 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-25_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4236
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 29-29 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..4170
FT                 /product="CR1-25_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RALRRIFLGADKRXQPDSAXSASSSCPTCTNKTVNAE
FT                 SHAKVNAETNTKVNVEVNPEIYAGHGADPKGYGTNFACESQWFTYGSRDRL
FT                 TNTLRSTPSLPQQSSVQHLPASSPGRAVESIMRAPRLPDATAPSPSYRTRS
FT                 PASRSHQRRPGAGVGVGGGVSQTAPLGKYPSQLQVSLPDACPTYSSSLITS
FT                 SSTRTANASPPAQAIQSSPGRTVESIMRAPRLPDATTSSFSYRTRSPAGCS
FT                 HQSRPGAGVGVGGGVSQPVLFGKYPFQSQRVLPDASPTHRSCPSTSTSTRT
FT                 ANASPLPAQAIQSSPGRTVESIMRAPRLPDATTSSFSYRTRSPAGCSHQSR
FT                 PGAGVGVGGGVSQPVLFGKYQFSTPHTSPDARSDFSATVPPSTFVTLAAPG
FT                 CVYHGTMEDLGSANSGMPAALTASDPASASSERGFLNVYYQNVRGLRTKTN
FT                 SVLLALSSCDYDVIIFTETWLVPGIKNSEFAAGYDIFRCDRSAETSSLQRG
FT                 GGVLVAVKTGRNCKDVELVGCGSLEQIAVRIVLPHQALFICCIYIRPASNI
FT                 DVYQLHTGAVQQILGMAGVRDLVLVVGDYNLPALTWFFDDDTHSFLPINAS
FT                 AEQEVLLLESMLSCGLLQINNLASAHGNLLDLAFVSDATAAELIDPPCPLL
FT                 KPDAHHKPILLKLDYDHGGNDDLDDADEIFDFNQCDYALLNERISAVDWDT
FT                 LLDTSSVDESTANFYERLNSILHEVVPKKIRRMSHRYKLPWWNDELRTLRN
FT                 RLRKATSRYMESKTAWDKVTVQNIEDEYNALNQESFRSYINNTQRSLKSDP
FT                 SKFWSYVNSRKNANRTPTDVSYRDLNSTSPAIAANFFADFFKSVHSSDAIP
FT                 PRDHEFEYVPTHYLPLPLPVLNDEETLKALSGVDGAKGPGPDGIPPSLIKA
FT                 CADSLTVPVKRIFNDSLRKGVYPAMWKVASITPIHKSGSTKKVENYRPISI
FT                 LNCLAKVLEKIVYDRLYAVVRPIISDDQHGFMQKRSTTTNLLTFVHSTVNA
FT                 LESGEQVDAIYIDFEKAFDKVPHALTVRKLRKLGLPAWITNWLLSYLTNRK
FT                 AFVNLRIARSSTFDIPSGVPQGSHLGPLIFILFVNEICALTNSNTLMYADD
FT                 LKLFRSVKNNVDCCSLQMDVNALLHWCESNGMKVHVKKCKVISFSRSRNPL
FT                 RFDYTMGDGCPLDRVNSIRDLGVTVDRKMKFNEHIALTTGKAFAMLGFLKR
FT                 NTAHFDDPFALKVLYASLVRSVLEYAAVVWAPYHVTLAARIERVQRAFVRF
FT                 ALRKLPWNNPLILPSYEGRCLLFRLQSLAERRTLMQRLFVFDLLRGNIDCR
FT                 SIRNNVRFNEPARQGLRGERPLLWIPRHIFDYGYNNPLDVCFRQFNEICSC
FT                 FDYVVSKTVFKTRIS"
XX
SQ   Sequence 4236 BP; 1041 A; 1186 C; 1014 G; 992 T; 3 other;
     cacgtggcct cgcggtcttg tgatccgaga atttgaagag cgctccggag aatttttttg        60
     ggagccgaca aacgcgwtca accagactca gcwgmatccg cctcctcctc ctgcccaacc       120
     tgcaccaaca aaaccgttaa cgccgaaagc cacgccaaag tcaacgccga aaccaacacc       180
     aaagttaacg tcgaagtcaa ccccgaaatc tacgccggac acggagctga cccaaaagga       240
     tacggaacca acttcgcctg cgagtcacag tggttcacct atggatcacg agacagacta       300
     acgaacacac tcagatcaac accctcactt ccgcaacagt cttcagttca acatctacca       360
     gcttcatcac caggacgcgc cgtagaaagc attatgagag cccctcgact gcccgacgcc       420
     accgcgccct cgcccagcta ccgcacgaga agcccagcta gtcgcagcca tcagagacgt       480
     cctggtgctg gtgtcggtgt tgggggaggg gtctctcaaa cggcgcccct cggcaagtat       540
     ccttctcaat tgcaagtttc tctacctgat gcctgcccaa cttacagttc gagtctcatc       600
     acgtcgtcct cgactcggac tgcaaacgct tcaccgccag ctcaagccat ccagtcttcg       660
     ccaggacgca ccgtagaaag cattatgaga gcccctcgcc tgcccgacgc caccacgtcc       720
     tcattcagct accgcacgag aagtccagct ggttgcagcc accagagccg tcctggtgct       780
     ggtgtcggtg ttgggggagg ggtctctcaa ccggtgctct tcggcaagta cccttttcaa       840
     tcgcaacgtg tcctacctga tgccagtccc actcacagat cttgtccatc cacgtcgacc       900
     tcgacgcgga ctgcaaacgc ttcaccgctg ccagcccaag ccatccagtc ttcgccagga       960
     cgcaccgtag aaagcattat gagagcccct cgcctgcccg acgccaccac gtcctcattc      1020
     agctaccgca cgagaagtcc agctggttgc agccaccaga gccgtcctgg tgctggtgtc      1080
     ggtgttgggg gaggggtctc tcaaccggtg ctcttcggca agtaccaatt cagcacgcct      1140
     cataccagcc ctgacgctcg ttcagatttc agcgctactg taccgccgtc gacttttgta      1200
     actcttgctg caccggggtg cgtgtaccac ggcactatgg aagaccttgg ttccgcgaat      1260
     tccggcatgc ctgctgcatt gactgcatct gatccagctt ctgcgtcgtc agagcgtggt      1320
     tttttgaacg tgtactatca aaacgtgcga ggcttaagga caaagacaaa ttccgtgctg      1380
     ttagccctta gttcctgtga ttacgacgtc atcatcttta cggagacgtg gctggtaccg      1440
     gggattaaaa actccgagtt tgctgcggga tatgacattt ttcgttgcga ccgaagtgca      1500
     gaaacatcat cacttcaacg cgggggaggt gtactggttg cggtcaaaac aggacggaac      1560
     tgcaaagacg tcgaactcgt gggttgtggc agcctggaac aaatcgctgt ccgtattgtt      1620
     ctaccacatc aggcactttt catctgctgt atctacattc gaccagcaag taacatcgat      1680
     gtgtaccagc tccacacggg cgctgtgcag caaattctcg gcatggcggg agtaagagat      1740
     ttggttctcg tcgtcggcga ttataacctt ccggcgctaa cctggttctt tgatgacgat      1800
     acgcacagct ttctcccaat caacgcatcg gcagaacagg aggttttgct gttggaatcg      1860
     atgctctcct gcggacttct gcaaatcaac aatctggcga gtgcacacgg aaatcttctt      1920
     gacttggcat tcgtgagtga tgcgactgct gctgaactca tcgatccgcc atgtcctctt      1980
     ttaaaaccag acgctcatca taagccaata cttttaaaac tggattatga tcacggtggc      2040
     aatgacgacc ttgatgatgc agatgaaatc ttcgatttca accagtgtga ctatgccctc      2100
     ctgaacgaga gaatatccgc cgtggactgg gacactctgc ttgacacttc ctcggtagat      2160
     gaatctactg caaacttcta tgaaaggctc aattccatcc tacacgaagt cgttccgaag      2220
     aaaatccgtc gaatgagcca ccgatacaag ctgccgtggt ggaacgatga actacgaacg      2280
     ctcagaaacc gcttacgcaa ggcaacatct cgatacatgg aatcaaagac agcatgggac      2340
     aaggtgacgg tgcaaaacat cgaggacgaa tacaacgcgc tgaaccaaga aagctttcga      2400
     tcctacatca acaacacaca aaggagtcta aagagcgatc catcgaagtt ttggagttac      2460
     gtgaacagcc ggaaaaacgc caatcgaact ccaacagacg tttcgtaccg cgatttgaac      2520
     tcaacatctc cagccatcgc cgccaacttc ttcgctgatt tcttcaagtc ggtgcacagt      2580
     tctgatgcaa ttccaccccg cgaccacgaa tttgaatatg taccaactca ctatctgccg      2640
     ctgccgcttc cggtgctcaa cgacgaggaa actctgaagg cgctttcggg agtggacgga      2700
     gctaaaggac caggtccgga tggaattcca ccgtcgctga tcaaagcctg tgctgattct      2760
     ctcaccgttc cagttaagag gattttcaac gattctcttc gaaaaggcgt ttatcccgcg      2820
     atgtggaaag tggcgtcaat cactccgatt cataaatcag ggagcaccaa gaaagtcgag      2880
     aactaccgac cgatatcgat cctgaactgt cttgccaagg ttctggagaa gattgtgtat      2940
     gataggctgt acgcggtggt gcgtccgatc atttcggatg atcagcacgg attcatgcag      3000
     aaacgttcaa caacaaccaa cctcctaaca tttgtacact caactgtaaa tgcccttgaa      3060
     tccggtgaac aggttgacgc catctacata gatttcgaga aagccttcga caaggtacct      3120
     cacgcactca ccgttcgaaa gctccgcaag ctcggtcttc ctgcttggat caccaactgg      3180
     ctgctttcgt acctgacgaa tcggaaagct tttgtcaatc ttcgaatcgc ccgttccagc      3240
     acatttgaca ttccctctgg cgtcccacaa ggcagccacc tcggcccact cattttcatt      3300
     ctctttgtga acgaaatatg tgcgcttaca aattctaaca cattgatgta cgctgatgac      3360
     ctgaaactgt tccgctcggt gaagaacaac gtcgactgct gctcgctaca gatggacgtc      3420
     aatgcgctcc tgcactggtg cgagtcaaat ggaatgaagg tacacgtgaa gaagtgcaag      3480
     gttatctcgt tcagtcgttc aaggaaccct ctgcgatttg actacacgat gggcgatggg      3540
     tgtcctttag atcgtgtaaa ctctatccgg gacctaggcg tgaccgtgga tcgtaaaatg      3600
     aagttcaacg aacacatcgc tttgacaact ggaaaggctt ttgcgatgct aggcttcctg      3660
     aagcgcaaca ccgcccactt cgacgacccg tttgctttga aagtgctgta cgcgtcgctg      3720
     gtcaggagcg tcctggagta tgctgcggtt gtttgggcac cgtaccacgt aacgctggct      3780
     gcgcggattg aacgagtcca gcgtgccttc gtgaggtttg ccttgcgcaa gctgccatgg      3840
     aataacccgc tgatcctgcc atcgtacgaa ggacgctgct tgctgtttag gctgcagtca      3900
     cttgccgagc gtcggaccct gatgcagcgt cttttcgtat tcgatctgct gcgcggcaac      3960
     atcgactgcc gcagcatccg caacaacgta cgcttcaatg aaccggctcg ccaaggactc      4020
     agaggggaac gccccctgct gtggattccg agacatatat ttgactatgg ttataataac      4080
     ccgctagatg tttgtttccg tcaatttaat gaaatctgct cttgttttga ttatgtcgtg      4140
     tccaaaactg tgtttaaaac tagaataagt taatgttagt tttttaagat tatacagcct      4200
     gagcatttta gatggaggcg gtgaaataaa taaata                                4236
//
ID   CR1-26_CQ   repbase;    DNA;    INV; 4189 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-26_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4189
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 30-30 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           395..4114
FT                 /product="CR1-26_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGRISILGTPNPTDLGPPAVEVHPRRPGSQVRSDVGV
FT                 SQPATTGKYSPLRTLQSLQRTPIFSLDNTRITSSEIPLTSSGAAVPSPSLS
FT                 PVQSTRLPCESTSPGRAIESPMGASCPPDTATSSPIYHFGTFSARRCHQSR
FT                 PGAGVGAEAEVSQMAHLGTYMSCSEHLPSPNNHPHSSAGFVSPERAHQHLA
FT                 MEFQAAAAHLAVSTTPGRVYLSTMGDPGPPATVEPPCHRRLFSRPGPVCSE
FT                 GNGVSQTASSGKYTSNESAVLSGSDLSLDSSTFPDAAAAVVQTEPVERRFL
FT                 TVYYQNVRGLRTKTNETFLALCRCDYDVIVFTETWLTEAIKDAELTKNYKL
FT                 FRCDRNPESSSLLRGGGVLIAAKAKLECKAVELLNCESLEQTVIRLTLPLQ
FT                 TLFVCCVYIRPVSDPATYATHAAAVQQVIDLSKESDSVLVVGDYNLPNLIW
FT                 YHDDDTDSLLPVNASSEQEVTLVESMLPLGLTQVNDLPNAFGKLLDLVFVS
FT                 DNVSVELFEPPCPLLKVDQHHNPLLMQLEYRTALNDNTVEPDAVFDFKRCD
FT                 YTTLNERILAVDWLTFLDAPCVNSVTEMFYEKLFEIFNEVVPRKSVRICHR
FT                 YKQPWWNDDLRLLRNRLRKATSRFLSTKTAWDKVVARNIEEEYLNLQQESF
FT                 QNYINDLQSTVKSNPSKFWTYVNAKKQTEQTPLDVSYRDVNSSSPEESASF
FT                 FADFFKSVYNTNSTVYPDSHLEGAPTSNISIPRPTLADDDILKVLSSVDPS
FT                 KGPGPDGLPPVFVKSCANSLVVPVSVIFNKSLEHAIFPDIWKLASISPIHK
FT                 SGNVSKVENYRPISILSCLAKVLEKVVYDRLFPAVRRIISANQHGFMRNRS
FT                 TTTNLLSFVSPTINVLESGGQVDAVYIDFEKAFDKVPHTLTIKKLKKLGLP
FT                 DWIVAWLHSYLTSRKAFVNLRVTRSDIFDIPSGVPQGSHLGPLIFILFVNE
FT                 LNTLTGSSTLMYADDLKLYRTVKSHVDCLALQADVDTLLHWCDRNGMTAHA
FT                 KKCKVLSFSRSRNPIISDYSMNGQQLDRVETFKDLGVVVDSKLRFNQHIAL
FT                 TTAKAFAMLGFLKRSTKHFDDPYSLKSLFCSLVRSVLEYAVVVWAPFHETQ
FT                 VTRIERVQRAFVRYAFRKLRWNDPLRLPPYEQRCALFNLPTLARRRVFIQR
FT                 LLVFDVLRDNIDCSSIRELVHFYVPARQGLRNNPPLLSVPRHRTVYGHHNP
FT                 LDVCLRKFNDVHSCFDFIVSKNVFKSRISS"
XX
SQ   Sequence 4189 BP; 1042 A; 1160 C; 967 G; 1018 T; 2 other;
     taaccagcat aacggtagaa ccaaggcccc aacggttctg gttgtacctt accggactga        60
     atccaaaaat caacaccaac gacgtcaagt tgatcgtgga acgttgcctt ggaacaagct       120
     tggatcttga tcctaagctc ctggtcccga aggataccga ctgctcgcgt tacagattcg       180
     tttcgtatcg aatcggcttg gatcccaaac tccgagataa ggcccttgat ggaaacaatt       240
     ggccaagaaa cctcggtgtc agagagttcg agtttttcga cacggattca aaaaaccgat       300
     caacgcctcg tgtctctcca gcagaatagt ggtggatcga gacctcggct acgcatcacc       360
     tctacaaagt tcccgctaca tcttccagtc gaccatgggg cgcataagca ttttgggaac       420
     ccccaatcct accgacctcg gcccacccgc tgttgaagtt catccccgtc gcccgggctc       480
     acaggtccgt agtgatgtgg gggtctccca gcctgctacc acaggcaagt actcgcctct       540
     tcgaacactc caatcgcttc aaagaactcc aattttcagt ctcgacaaca ctcgcattac       600
     ttcctcggaa atcccgctta ccagctcagg cgctgctgtg ccttcaccca gtttgtcgcc       660
     ggttcagtca actcgtctgc cgtgtgagag cacatcacca ggacgcgcca tagaaagccc       720
     tatgggagcc tcttgcccgc ccgacactgc aacctcttcg ccaatctacc actttggaac       780
     attttctgct cgccgctgcc atcagagtcg tcctggtgca ggtgtcggcg ccgaggcaga       840
     ggtctcccaa atggcacacc ttggtacgta catgtcttgc tctgaacatc tgccctcgcc       900
     aaacaatcat ccgcattcca gcgctggctt cgtttcacct gaacgagcac atcaacatct       960
     cgcaatggag tttcaagcgg cagctgctca tcttgcagtt tcaaccacac cggggcgcgt      1020
     gtacctaagc actatgggag atcctggacc tcctgccaca gtcgagccac cgtgtcatcg      1080
     tcgtctcttc agccgccctg gtcctgtgtg cagtgaagga aatggggtct cccagaccgc      1140
     cagctcaggc aagtacacgt ctaacgaaag cgcagtgtta tcgggctcag atctctcctt      1200
     ggattccagc acctttcctg atgctgctgc tgctgtagtt caaaccgaac cggtggagcg      1260
     ccgcttcctg acagtatact accagaacgt gagaggtctc agaacaaaaa ccaacgaaac      1320
     atttctggca ctatgtcgct gcgactacga cgttatcgtt ttcaccgaaa cctggctcac      1380
     ggaggcgatc aaagatgccg agttaacaaa aaactacaag ctgtttcgat gcgaccgcaa      1440
     cccagaaagc agttctctac ttcgaggagg aggggtcctt atcgcagcta aagctaagct      1500
     cgagtgtaaa gctgtcgagc tactcaattg cgaaagcttg gaacagaccg taattcgcct      1560
     gaccctgcca ctgcaaacgt tgttcgtgtg ctgtgtctac atcagacccg ttagcgatcc      1620
     cgccacctac gccacccacg ccgccgccgt gcagcaagtc atcgaccttt ccaaggaatc      1680
     ggactctgtc ttagttgttg gcgattacaa cctcccgaat ctaatctggt accatgacga      1740
     cgacacggac agcctccttc ctgtaaacgc ttcttcagag caggaagtca cgctagttga      1800
     gtcgatgttg ccgctgggtc taacacaagt aaacgacttg cccaacgcgt ttggtaagct      1860
     gctggatctg gtatttgtca gtgacaacgt atcggtcgag ttgttcgagc ctccatgccc      1920
     tcttttgaaa gttgatcagc accacaaccc gcttcttatg cagctggagt acagaactgc      1980
     gttgaacgac aacactgttg aacccgatgc tgtctttgac ttcaaaaggt gtgattacac      2040
     gactttgaac gagagaatcc ttgctgtcga ttggctgacc tttctggatg ctccctgtgt      2100
     caactctgtg actgaaatgt tctacgaaaa actctttgaa atcttcaacg aggttgtacc      2160
     aaggaagtca gtacgcatct gccaccgcta caagcagccc tggtggaacg acgatttgcg      2220
     cttgctccga aatcgtctgc ggaaagccac tagcaggttt ctatcaacta aaacagcgtg      2280
     ggacaaagtc gtcgcgcgta acatcgaaga agagtacctg aatcttcaac aagagagctt      2340
     ccagaactac atcaatgatc tgcaaagtac cgtgaagagc aacccgtcaa aattctggac      2400
     ctatgtgaac gcaaaaaagc agactgaaca aactccgctg gacgtgtcct accgtgatgt      2460
     caacagttcg tcgcccgaag agtcagccag tttttttgct gatttcttca aatctgtata      2520
     taacacaaac tctacggtgt acccggacag ccacctggag ggggctccta cctctaacat      2580
     ctcaatccct cgcccaaccc ttgcagatga tgacatcctc aaggttcttt cgagcgtcga      2640
     tcctagcaaa ggtcctggtc ccgatggtct cccaccagta ttcgtgaaaa gctgtgcaaa      2700
     ctcgcttgtt gtgccggtct cggtgatctt caacaaatcg ctggaacatg caatcttccc      2760
     cgacatctgg aaacttgcgt cgattagtcc aatccataaa tccggtaacg taagcaaggt      2820
     cgaaaactac cggcctattt ctatcctaag ctgtttagca aaagtgctag aaaaggtcgt      2880
     ttacgacagg ctgttcccag cagtgcgacg gattatctcg gcaaaccaac acgggttcat      2940
     gcggaaccgg tcaactacca cgaaccttct ttccttcgtc tcacctacca tcaacgtgtt      3000
     ggagagtgga ggccaggtgg acgcagtgta tatcgacttc gagaaggcgt tcgacaaggt      3060
     gccgcacacg ctgaccatca agaagctgaa aaaactgggc ctcccggact ggatcgtcgc      3120
     ttggcttcac tcctatttga cgagcaggaa ggctttcgtt aatctccggg taactcgttc      3180
     cgatatcttc gatattcctt ctggcgtccc gcaaggtagc cacctggggc cgctcatttt      3240
     catactgttt gtgaatgagc tcaacacttt gacgggttca agtacgctta tgtacgccga      3300
     cgatcttaaa ctctaccgaa ctgtmaaatc tcacgtcgac tgcctcgctc tacaagcaga      3360
     tgtggacacc ttgctgcact ggtgcgaccg gaacgggatg acwgcgcacg caaagaagtg      3420
     taaggttctg tcattcagcc gttcgaggaa ccctataatc tcggactaca gcatgaatgg      3480
     acaacaactc gatcgtgtgg aaaccttcaa ggacctggga gtagttgttg acagtaagtt      3540
     gaggttcaac cagcacattg ccctaacgac cgccaaagct tttgccatgt tgggcttcct      3600
     gaaaaggagt actaagcact tcgacgatcc ttactcgcta aaatcgctgt tttgctcgtt      3660
     agtaagaagt gttttggagt acgcagtcgt tgtatgggcc ccgttccacg aaactcaagt      3720
     caccagaatc gaaagagtac agcgggcttt cgtacggtac gccttccgga aacttcgctg      3780
     gaacgatccc ctgcggttgc caccgtatga gcaacgttgt gcgctgttca acctgcctac      3840
     gctcgcccgc cgccgtgttt ttatccagcg tctactggtc ttcgacgttc ttagggacaa      3900
     cattgactgt agcagcatcc gtgaactggt ccatttctac gttccagcac gtcaaggact      3960
     caggaacaac ccaccactgc ttagtgtccc gcggcaccga acggtttatg gacatcacaa      4020
     cccgttagat gtttgtttga gaaagtttaa tgacgttcat tcatgttttg attttattgt      4080
     gtctaaaaat gtgtttaaat ctagaattag ttcatagttt ttttaagaaa gtagcctgtg      4140
     catcatattg atggaggtgt cgacaaataa ataaataaat aaaaaaaaa                  4189
//
ID   CR1-27_CQ   repbase;    DNA;    INV; 2382 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-27_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2382
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 31-31 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..2328
FT                 /product="CR1-27_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ARNCFRRVYACNXDTANLQPAELQPKTPGPAVTPVPE
FT                 STESLTYDFTRCDFEAVNXALSQINWTGILAHCSLDEAVSRFYDALXDVIQ
FT                 LHTPLRRLHPPSNRKPWWNATLRNLRNRLRKARTRLHKRRCQPNIAEVREL
FT                 EELYESQQNAAFSEYIHRIETDVKQNPRSFWTFLKSRKKGSGIPTEISNGC
FT                 VEANSVEEQASLFADFFSGVYSTSLPAPCNEVVDHIPTHDLHLPVVHFSIE
FT                 DVSRALDDVDVTKGPGPDSIHPSFLKNCAASLALPTTIIFNRSLAESTFPT
FT                 AWKLASITPIHKAGNVHKVENYRGISILSGFAKLFEHLVHGALYPVLKPII
FT                 ANEQHGFVKRRSTTSNLLLFTSTLLTNIEKGQQIDAVYVDLSKAFDKVPHA
FT                 LLLEKLRRYGLPEWIVRWIHSYLADRKAFVKVRCTSSHLLAIPSGVPQGSV
FT                 IGPLLFILFVNDLCSVLESDKLMYADDLKVFRSVSSPLDSCALQQDIDRLL
FT                 RWCTANGMEVNVQKCKIISFTRKRTPLLSSYRMGQNELERVNTIKDLGVTI
FT                 DSKACFNEHIALTTAKAFATLGFLRRNAADFVDLFALKTIYCSLVRSQLEY
FT                 AVQVWAPYYAVQAERIERIQRAFTRFAVRRLPWVRPQGLSSYDDNCERLKL
FT                 PALASRRVLLQRIYVFDLLSCNIDCPTLRDKITLHIPARNLRNPAPFLEVP
FT                 GHRTNYGYYSPLSACCRVFNDVADVFVFGMSKCVFKTRIKNRT"
XX
SQ   Sequence 2382 BP; 649 A; 611 C; 509 G; 610 T; 3 other;
     ggataccatc gtagttgtag gcgattacaa tctgcctcac ctcaactggt ctttcgattc        60
     ggacatcaac ggatacctgc caacaaacgc atctgctgag caagaaattg ctttcgtaga       120
     gtctatgctt gcaacwggga tacagcaaat cttcaacctg ccgaactgca accgaagact       180
     cctggacctg ctgtgacacc tgtaccagaa tctaccgaaa gcttaacata cgacttcact       240
     cgttgtgact ttgaagcggt taacmtcgca ctttcacaaa ttaactggac tggcatactt       300
     gctcactgct cactggatga agcagtttcc cgtttttacg atgcactatw cgacgttatc       360
     caactccaca cgccgctgag acgactacat cctccatcga accgtaagcc ttggtggaac       420
     gctacacttc gaaatctacg aaaccgactc aggaaagcaa ggacccgact ccacaagcga       480
     cgctgtcaac caaatatagc agaagtgcgt gaattggaag agctctacga atcccaacaa       540
     aatgcagctt ttagtgagta cattcatcgc atcgaaacag acgttaagca aaaccctcgc       600
     tctttctgga cattcctgaa gagtagaaaa aaaggtagtg ggattccaac tgaaatctcg       660
     aacggatgcg tagaggcgaa ctctgtggaa gagcaagcca gcttatttgc tgactttttc       720
     agcggggttt actctacctc tctccctgca ccgtgcaatg aagttgtaga tcacatacca       780
     actcatgatt tgcatctgcc agtagtacat ttctcgatag aagatgtatc aagagccctt       840
     gatgatgttg atgttactaa aggtcccggc ccggacagta tccatccatc tttcttgaaa       900
     aactgtgcgg cttctctcgc tcttcccaca actatcattt tcaaccgctc gctcgcagaa       960
     tccacatttc ccactgcttg gaaattggct agtattacgc caatacataa agccggcaac      1020
     gttcacaaag tcgagaacta ccgaggaatt tcaattttga gtggttttgc taaactgttt      1080
     gaacacctgg tacatggagc actttatcca gtattgaagc caatcatcgc caacgaacaa      1140
     cacgggtttg ttaagcgacg ctcaacaacg tccaaccttc tcctcttcac ttcaacactc      1200
     ttgacgaaca ttgaaaaagg ccaacaaatt gacgctgttt acgtggatct atctaaagcc      1260
     ttcgataagg taccgcatgc tctcttactg gagaaactga gacgctatgg ccttccagaa      1320
     tggatcgtcc gatggattca ttcatacctt gccgatcgca aagccttcgt caaagtaaga      1380
     tgcacttcct ctcatctcct cgcaattcct tccggagtcc cgcaaggcag cgtgattgga      1440
     cccttacttt tcattttgtt cgtgaacgac ctgtgcagtg tcctcgagtc ggacaagctg      1500
     atgtacgcag acgacctgaa agtgttccga tcagttagct cgcctctcga cagctgtgca      1560
     ctccagcaag acatcgatcg cctgttacgc tggtgcactg ccaacggaat ggaggtcaac      1620
     gtacaaaaat gcaaaatcat aagcttcacg cgcaaacgaa cacctctctt gagtagctac      1680
     aggatgggcc aaaacgaact tgaacgggtg aacactatca aggacctggg tgtgacgatc      1740
     gacagcaaag cgtgcttcaa cgaacatatt gcactgacaa cagcgaaagc ttttgccacc      1800
     ctcggatttc ttcgtcgaaa tgcagctgac tttgtggatc tgttcgcgct taaaacaatc      1860
     tattgttcgc tagttcggag tcaactagag tacgccgtcc aagtatgggc accttactac      1920
     gccgtgcaag ctgaaaggat cgagcggatt cagcgagctt tcaccagatt tgctgtgcga      1980
     cgcctgccat gggtgcggcc tcaaggactc tcctcgtacg atgacaactg tgagcggctt      2040
     aaactccctg cgctggcatc acgacgagtt ctactacagc gaatttatgt attcgacttg      2100
     ttgtcgtgca atattgactg ccctactctt cgcgataaaa tcaccctaca catcccagct      2160
     cgtaatctgc gcaaccctgc tccgtttctt gaagttcctg gccatcgtac gaactacggt      2220
     tattatagtc cccttagtgc ttgctgtcga gtgtttaatg atgtagcaga tgtgtttgtg      2280
     tttggaatgt caaaatgtgt atttaaaact aggattaaaa ataggacata agttgtagtc      2340
     tgtgcggcga gtgccgaaga tgaaataaat aaataaataa aa                         2382
//
ID   CR1-2B_DAzt repbase;    DNA;    INV; 3760 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DAzt;
KW   CR1-2B_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-3760
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 874-874 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated. The consensus is ~93%
CC   identical to that of CR1-2_DAzt.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..670
FT                 /product="CR1-2B_DAzt_1p"
FT                 /translation="MEVEVVPSTPASTGSSASAIPPGPAPRVEPASASPIN
FT                 HVTPLDRSTLIAVAPLKPIFVSRLMESATDVMVRDYIFTKLNINNSSGIVV
FT                 TKFTFKEKRNISSFKILVPEKFVKNVLEPSFWPEHTICHIFSSRSRPSQSA
FT                 PRVGILPTPSTVLPSISKN"
FT   CDS           1036..3540
FT                 /product="CR1-2B_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLHAVHLQSVLSQLCDSDRLIVLGDFNLPNVTWSPSN
FT                 DSNLMFPSMQHDFVDSLSDTSLGQVNGIRNSMSRTLDLVFTTDASSTLVCR
FT                 GSPLSFPEDPYHPTLSIDFLLPSSCPIKSFIKPSNIYCFKKADFLSLNTAL
FT                 SQMDWSFLDDFQEIESATNAFYSSIFSIFPMHVPLVTPSRNLSGPIWFTPR
FT                 LINLKNXKSRMFKKFKKSGLQSDFSKYSIAKSKFALFNTLCYNRYLTKCKL
FT                 NFKRDPKQFFRFVNSKRKSSQFPSSLHLNGSYADRDCDIADLFASFFQRCY
FT                 SVPSINLPSILASSNDFSSSYSYPIPLNSSNCILPPFIDYDGLLTNLKSCK
FT                 FSFSTGPDSVPSAVLKLCAESLCVPLLKLFNLSLKTGVFPTVWKESYIVPF
FT                 HKKGSKSDVSNYRCISNLSAIPKLFEKIITSQLQHFCRSVFSESQHGFIKR
FT                 RSVSTNLLEFSTFVTSGFAKQCQTDVVYTDFSKAFDSVNHNLLIHKLSLLG
FT                 FPTKLLYWTNSYLSSRSQRVSFNSSLSKPVIVSSGVPQGSHLGPLLFNLFI
FT                 NDLPQMLSHSRVLMYADDVKLCFSYSDPLSPLSLQSDLDALNNWCLINILP
FT                 LNISKCNIMTFHRNKPYLFDYSINNIILQRLFKVNDLGITFVPNLCFNSHI
FT                 STISNKAKGVLGFVKRWSKEFTDPYTTKLLYVSLVRPILEYGSCVWSPQYQ
FT                 KFQDMLESVQKQFLIFALRGLNWDPSIHLPSYESRLRLINLHSLKSRRICQ
FT                 GVLFLHKLLSGEVESTALISLISIAAPFRPTRHYFPLHLQLCLSNYSDYES
FT                 FRSLCRNYNQFFHLFSFDTSSNMVKIILINNLI"
XX
SQ   Sequence 3760 BP; 933 A; 970 C; 581 G; 1273 T; 3 other;
     atctacatcg aaaaagacgg ctggctcttc acctgccggc tgttcacctg tgcccgtgac        60
     tgccaaggat atccaactgg acagtaatga tcatcccgtg cctgtgtttg cccaggttgt       120
     ccaaccggtc attactgatc atccagttgt tggcatcacc gtgcccccta aggaagtcgt       180
     cgatactgct gtcagcatgg aagttgaagt tgtcccttcc acaccggcta gcactggctc       240
     ctcagccagc gctatcccac ccggacctgc ccctcgggta gaacccgcct ctgcctcacc       300
     cataaatcat gtgacccctc tagaccgatc tactttaatc gctgtcgctc ctctaaaacc       360
     tatttttgtc tcccgtctca tggaatcggc tacagatgta atggttcggg actatatctt       420
     caccaaactg aacattaata actcctctgg catcgtagta actaagttta cctttaagga       480
     aaaacgtaat atttcctcct ttaaaattct tgtcccggag aagtttgtaa agaatgtgtt       540
     agaaccctct ttctggcccg aacacactat ctgtcacatc ttcagcagcc gatctcgacc       600
     ttcacaatcc gctcctcggg taggaattct tcctacacca tctactgtat taccatctat       660
     ttcaaaaaac tgaattcttc cctacctcta aagatcactt atcagaatgt acgaggcctg       720
     tgcagtaagc tcaccaaatt acatgctgat agtgcaactt ttgattccga cattattgcc       780
     ttctctgaaa catggctcaa tccatcaatc tcggattccg agatttttgt agacaatttt       840
     accatatata gatctgatcg accatctcga ggtggcggcg tcctaattgc tgttcgttcc       900
     gacttaactt cccaactctt tcccatcgat gagcccaaca ctattgaaat tatcgtagtt       960
     aaaatccgtc tgtgttcttt taatttattc atatcatgct cttatatccc gccgtcctct      1020
     gaatttacaa cttatatgct tcacgctgtc catcttcagt ccgttctgtc tcagctttgt      1080
     gattctgatc gtcttattgt cctcggcgac tttaatctcc caaatgtcac ttggtctcca      1140
     tccaatgact ctaacttaat gttcccatct atgcagcatg acttcgttga ttctctgtcc      1200
     gatacatcgt taggccaggt aaatggcata cgtaatagca tgagtaggac ccttgatctc      1260
     gtcttcacta ccgatgcttc gagcactttg gtatgtcgag gatcacctct atcattccct      1320
     gaagacccat accatcccac actttcaatt gatttcctgt tgccctcttc atgccctata      1380
     aagtcgttta ttaagccttc gaatatctat tgctttaaga aggctgattt tctctccctg      1440
     aatactgccc tatctcagat ggattggtca ttccttgacg atttccaaga aattgaatck      1500
     gctacgaatg cattctatag ctctattttt tccatctttc ccatgcatgt tcctttagtc      1560
     accccctcca gaaatctttc tggccctatc tggttcaccc cgagattaat aaatctgaag      1620
     aatttwaaat cccgtatgtt caagaagttc aaaaaatccg gtttgcaatc agacttttcg      1680
     aagtactcaa ttgcaaaatc gaaatttgct ttatttaata cattgtgcta caatagatac      1740
     ttgaccaaat gcaagcttaa ctttaaacgc gatcctaaac aattcttcag gtttgttaat      1800
     tctaagcgca aatcttccca gtttccttct tctctacact taaatggtag ttatgctgat      1860
     agggattgtg acattgctga tctgttcgct tccttttttc aacgttgcta ctctgtcccc      1920
     tctattaacc ttccctctat cctagcctca tcgaacgact ttagtagtag ttactcatat      1980
     cctatccctt taaatagttc taactgtatc cttcccccct tcatcgacta tgatggactc      2040
     ttaacaaatt taaaatcgtg caagttttcg ttcagcactg ggccagactc ggttccgagc      2100
     gcggttctta aactttgtgc agaatctctt tgtgtgcctc tcctaaaact attcaacttg      2160
     tctctcaaga ctggtgtctt tcccaccgtc tggaaagaat cctatatagt tccctttcat      2220
     aaaaagggat ctaaatctga tgtctctaac taccgctgta tttccaactt atctgccatt      2280
     cctaaactct ttgaaaaaat catcacttct cagctgcaac atttttgtag gtctgtattc      2340
     tctgaatcac agcatggatt cattaaacgt cgctcagtct ctactaatct acttgaattt      2400
     tccacctttg ttacttcggg atttgctaaa cagtgtcaaa ctgatgtcgt ttatactgac      2460
     tttagtaaag ccttcgactc cgtcaatcat aatctactta ttcataaact gtctcttcta      2520
     gggtttccga ctaagcttct atactggact aattcttacc ttagtagccg ttctcaacgt      2580
     gtcagcttta actcctctct ctctaaacct gttattgtct catcgggggt tcctcaaggt      2640
     agtcacctgg gtcccttgct atttaaccta tttattaacg atcttcctca aatgttatct      2700
     cattcccgtg tcctaatgta tgctgatgac gttaagctat gtttttccta cagtgacccc      2760
     ttgtccccac tatctttgca atcagatctt gatgctctta acaactggtg cttaatcaac      2820
     attctacctc ttaacatttc taaatgcaat attatgactt ttcaccgtaa taagccatac      2880
     cttttcgatt actctatcaa taacattatc ctacaacgcc tcttcaaagt taacgacttg      2940
     ggcattacct ttgtacctaa tctatgtttc aactctcata tctctactat ctctaacaaa      3000
     gccaaaggag tccttggatt tgtcaaaaga tggtctaagg aatttacaga tccgtacact      3060
     acaaaactcc tgtatgtttc cctggttcgg cctattttgg aatatggttc ttgtgtttgg      3120
     tctcctcaat accaaaaatt tcaggatatg ctcgaatcag tacaaaaaca gttcctcatc      3180
     tttgctctcc gcggactcaa ttgggaccct tcgatccatc tcccttctta tgaaagtagg      3240
     ttgcgcttaa ttaacctcca ctctcttaaa tcccgtagaa tctgccaagg agttctcttc      3300
     ctccataagc ttctctctgg tgaggttgaa tcgactgccc tcatcagcct tattagtatt      3360
     gctgctcctt tccgcccgac taggcattac tttcctcttc atctccaact ctgtctttct      3420
     aactactcgg attatgaatc tttccgtagc ctttgccgta actataacca atttttccat      3480
     ctgttttcct ttgatactag ttctaatatg gtcaaaatta tcttaatcaa taacttaatt      3540
     taatttaaat agctgtaatt gggaattgtt cggctaccgg cttttctcta acctaaattt      3600
     ggctgttggt gggaccttat cggctactga gccgataatc agccccaccg ggtctgagta      3660
     tttgctttag cccttttctt gtaattattg atatgtaatt ttcaccctta cagtttaact      3720
     gtmcattgtt aaactttaaa caaaataaac aataaacaat                            3760
//
ID   CR1-2_AG    repbase;    DNA;    INV; 4665 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   CR1-2_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1 clade;
KW   CR1-2_AG; DNA/RNA-binding; PHD finger; endonuclease;
KW   reverse transcriptase.
XX
NM   CR1-2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4665
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-2_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 2-2 (2002).
XX
DR   [1] (Consensus)
XX
CC   CR1-2_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-2_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-2_AG occurred less than 1 million years ago.
CC   Integrations of CR1-2_AG have not produced target site
CC   duplications.
CC   The consensus sequence encodes two proteins: a 416-aa
CC   CR1-2_AG-ORF1p
CC   (positions 256 1503) and 996-aa CR1-2_AG-ORF2p (positions
CC   1559-4546). CR1-2_AG_ORF1p is a putative DNA/RNA binding protein,
CC   which includes the PDH domain. CR1-2_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains. The 3'
CC   terminus
CC   is composed of the AATA microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           1559..4546
FT                 /product="CR1-2_AG-ORF2p"
FT                 /translation="MEANPASNTHNPSDSLPPLITCSESTPGASRSLIPSI
FT                 DRLNIYYQNVRGLRTKLDELRLSLSELDMDVLVLTETWLDGSIPSSLISED
FT                 AYVIYRCDRNSLNSNRCRGGGVLIACSSVLNTSTLSLPFDSLESVWTIVKL
FT                 QNLAIYIGAVYIPPDLRSSEVVLDDLHESVSFVAGKLKPNDLMVLLGDFNS
FT                 PSLSWQPSASCVNQFIPTGVSRENVSLLDGMSVNGLLQLSGIKNIRGRQLD
FT                 LLFANAAFLECCSPVIASPVPLVALDNHHPALETSVLLTHSRPASSQRIPT
FT                 ARMFNFRKLDYQKLHRILADTDWSFIDADCDINQAVAAFTNVITSAFPSCC
FT                 PLLKPAPNPKWSNRALRLLKSDKNRAQRAYRLNNTLHNLCVYKYAAKAYRL
FT                 LNRHLYRRYVRRLQMRFTIDPGSFFRFANSRRGSASLPSTLFLDLSSATSN
FT                 PDICNLFAKHFSSVFVDPSTFKVPLDVGLSYTPSDVISCNSVVVSESLVKS
FT                 ALSKLKTSFSPGPDGIPACVLKKCGNTLTPILTRLFSRSLSVGIFPSQWKL
FT                 AWLVPIYKKGDRTLASNYRGISIICACSKILESIVHLSVMPCVKNYISTEQ
FT                 HGFMPNRSVSTNLMCFLSSLYHYLSSGKQVDTIYTDFKAAFDSIPLSLLVA
FT                 KLRKLGFGGSILPWFNSYLENRSYAVKICGSFSECFLSSSGVPQGSVLSPL
FT                 LFILFLNDCTSILPPNGFLLYADDVKIFLPVSSTADCLVLQSWLCKFSTWC
FT                 ASNGLVLCPEKCSVLSFFRSSTSITHAYSVCDAPIPRASLSKDLGVFFDPS
FT                 LSFKEHTDYVINKANKSLGYICRMSTEIRDPFCLKSLYCCWVRSVLEYACV
FT                 IWSPVQLSLLQRIERIQRRFTRIVFRRSLGHHSIPLPSYDDRCTLLGLAKL
FT                 EHRLSVAQASFVAGILLNTIDTPSLLSRLHLYAPCRTLRYRFRLQLPICRT
FT                 RFARNEPFVRAMSSFNSTSDLFDFNISYPVYRSRLRSFSVP"
FT   CDS           256..1503
FT                 /product="CR1-2_AG-ORF1p"
FT                 /translation="MASVICKKCEGAISNDPIPCFGLCEHYYHDKCIGLST
FT                 PLLRDFKKSQNLFWACADCAQRLRAVDTLRFSHGLSRDAAYLLESLQSDFR
FT                 DTSRSVQAASAGLRLELSSSLDCFRNEIALMKQESASSIRSVKDFIDSLTA
FT                 SHSMERNYSQAPLLTTLDEVKHGIKELDLMHRELLTSFNSLMNKLNSHLAT
FT                 HTTTSSAHHSAIPATHSTTTIPVAASKLTHQAVGENPSKRRLLDRSPDPSP
FT                 TNTVTRAMLSSGTGLSCNNITTVPERPPRTWVFISRIAPDTPIEAIREMAC
FT                 SNIGTDDILVYSLVRRDRDLSTLSYVSFKIGVPDSHRAIALAASTWPRGIS
FT                 FKEFIDLNPRSVNVWRPTTAASHAPSAPVTRESDHHSSPPSINHTTQLRNA
FT                 DFTISPDHGPMSLPYTQYFQQA"
XX
SQ   Sequence 4665 BP; 1046 A; 1223 C; 888 G; 1508 T; 0 other;
     tgtcacttgt cacttgtcac tcatagcggc tggttgtgct ttctcactct gctatttcca        60
     agttgatttt ttaccgcgat tttcttgttg attaaggctt gaactgtttt agttcggtta       120
     atttgcactc gcgcgttcac gtatcacaaa tttgtgcggc acctgtgaat tgtacggttc       180
     aacatataaa cattgcaatc cgcctgcggt tgttgtgacc actcactgtt cagtcgaact       240
     ttgcgctatt ttgcgatggc gtctgtgatc tgtaagaaat gtgaaggtgc tattagcaac       300
     gatccaattc cgtgcttcgg tctttgtgaa cactattacc acgataagtg cattggactt       360
     tcaaccccgc tcctgcgtga ttttaagaag tcacaaaatt tattctgggc ttgcgcggat       420
     tgtgctcagc gtttgcgggc cgttgacact ttacgcttct cgcacggcct ttctcgtgac       480
     gctgcctacc tgttggaatc gttgcagtcc gatttccgcg atacctcacg ttctgtgcag       540
     gcggcatcag ctggcttgcg acttgaactt tcctcttcac tggattgttt tagaaacgag       600
     atagctttga tgaaacagga atcagcatcg tcaattcgtt ccgtgaaaga tttcatcgac       660
     tcacttactg cttctcactc aatggaacgc aactactcac aggctccact actcacaacg       720
     cttgatgaag ttaagcatgg catcaaggag cttgatctca tgcaccgtga gcttctcact       780
     tccttcaact cactaatgaa caagctcaac tctcatcttg ccacgcatac cactacatcg       840
     agtgctcacc attctgcgat tcctgctacg cactcaacga ccacgattcc agttgcggcc       900
     tctaagctca cccatcaagc tgttggtgag aatccttcta aacgtcgatt gttggatcgc       960
     tctcccgacc catcgcctac caataccgtt acacgcgcta tgctttcatc gggcacaggg      1020
     ttgtcctgca ataatattac gaccgttcct gaacgcccac cccgtacttg ggtctttatc      1080
     tcccgtattg ctcctgatac tccgattgaa gcgatccgcg aaatggcctg ttctaacata      1140
     gggacagacg acatcttggt atacagcctt gtacgacgcg accgggatct ttctacgctc      1200
     tcctacgtat cttttaaaat tggtgtaccg gattcgcacc gggctattgc tttggctgct      1260
     tcaacctggc ctcgcgggat ctcttttaag gagttcatcg accttaatcc ccgctccgtc      1320
     aatgtttggc gacccactac tgcagcatcc catgcacctt ctgcgcctgt tactcgtgaa      1380
     tcggatcatc attcatcgcc accttctatc aaccacacga cacaactgcg aaacgctgat      1440
     ttcactattt cgcccgatca tggtcctatg agcttgcctt atacgcagta ctttcagcaa      1500
     gcgtaaaccg gctgatccgg ctgaagattt tcatgaacta ccgactttac ccgaattgat      1560
     ggaagctaac cctgcatcta atacacacaa tccgtccgac tctcttccgc cgttaataac      1620
     ttgcagcgag agcactcccg gcgcatctcg ctctctcatt ccttcgatcg atcgactaaa      1680
     catctactat caaaacgtaa gaggattgcg cacaaaacta gacgagttac gcctctctct      1740
     atctgagctt gatatggatg tgttggtgtt aactgaaaca tggctcgatg gctcaattcc      1800
     gtcctctctt atctcggagg atgcgtatgt catctatcgc tgcgaccgaa attctctcaa      1860
     cagtaaccgt tgccgtggtg gtggtgtact cattgcctgc tcttccgtgc tgaacacgtc      1920
     aactttatca ctgccgttcg actcgctgga gtctgtttgg acaattgtta agcttcaaaa      1980
     ccttgcaatc tatatcggcg ccgtttacat cccacccgat ttgcgttctt ccgaagtagt      2040
     ccttgacgat ttacatgaga gtgttagttt cgttgctggc aaacttaaac caaatgatct      2100
     tatggtgtta cttggtgatt ttaattcacc atcactctcc tggcaaccgt cggcatcgtg      2160
     cgttaatcag ttcattccta ctggtgtatc tcgtgaaaat gtttctctgc ttgatggaat      2220
     gtcggtaaac ggtttgctgc aattatccgg cataaaaaat atacgcggaa gacaattaga      2280
     tcttctattt gccaatgctg ccttcttgga gtgctgctcc cccgtcatag cttcacctgt      2340
     tccactcgtc gcgctagaca atcatcatcc tgctcttgag acaagcgtgc tccttacgca      2400
     ctctcgccct gcatcctccc aacgaatacc tacggctcgt atgttcaatt ttaggaaatt      2460
     ggactaccaa aagcttcatc gtatattagc cgataccgat tggtccttta ttgatgctga      2520
     ctgtgacata aatcaagctg tagcagcgtt tactaatgta atcacttccg ccttcccttc      2580
     ctgctgtcct ctccttaaac ccgctcctaa tcctaagtgg tcgaacagag ctttacgtct      2640
     attaaaatcg gacaaaaacc gcgctcaacg cgcctaccgt ttaaataata ctttacacaa      2700
     tctttgtgta tataaatatg cggctaaggc ttatcgtctt cttaatcgcc atctgtatcg      2760
     tcgctacgtt cggcgtcttc aaatgcgctt cactattgat cctgggtcat tctttcgttt      2820
     tgcgaactct cggcgaggct ctgctagcct tccatccacc ctgtttcttg atctgtcctc      2880
     tgctacgtcc aatcctgata tatgtaacct gtttgccaaa catttctcta gtgtatttgt      2940
     cgatcctagt acttttaagg ttcctttgga cgtaggcttg tcttacacgc cctctgatgt      3000
     gatatcatgt aattcagtcg ttgtaagtga aagcctagta aaatccgctt tatccaaact      3060
     taaaacttcg ttttcaccag gccccgatgg catccctgcc tgtgttttga aaaaatgtgg      3120
     caataccctc actcctattc tcactcgtct tttttctcgc tcgcttagtg tagggatttt      3180
     tcctagtcaa tggaaactag cttggcttgt tcccatttat aagaaaggtg accgcacact      3240
     agcatcaaac tacagaggca tttctattat ttgtgcgtgt tctaaaatcc tcgagtcaat      3300
     tgtccattta tctgtaatgc cttgtgtaaa aaattatatt tctacggaac aacacggctt      3360
     tatgcccaat cgctcagtgt ccaccaacct aatgtgtttt ttgtcttctc tatatcacta      3420
     tctgtctagt ggtaagcaag tagacactat ctataccgat ttcaaagcgg catttgacag      3480
     tatacctcta tcattacttg ttgctaagct tcgaaaacta ggtttcggtg gctctatatt      3540
     gccgtggttc aactcctatc ttgagaatcg ttcatatgca gttaaaatct gtggctcttt      3600
     ctctgaatgt tttcttagtt cttcgggtgt ccctcaaggt agtgtcctta gtcccttact      3660
     gttcattctc ttcctcaatg actgtacttc gatccttcct cctaacggct tcttgctata      3720
     tgcggatgac gttaaaattt ttcttcctgt atcttctaca gctgattgtc tagtccttca      3780
     atcctggctc tgtaaattct ctacatggtg tgcttctaac ggtttagtcc tgtgtcctga      3840
     aaaatgttcc gtcttgtctt tcttccgatc ttctacaagt ataactcatg cttatagtgt      3900
     ctgtgatgcc cctattcccc gtgcgtcctt gtctaaggat cttggcgtct tctttgaccc      3960
     gagtctttct ttcaaggagc acacggacta tgtcatcaac aaggccaaca aaagtcttgg      4020
     ttatatttgt cgcatgtcca ctgaaattcg tgatcccttt tgtcttaagt ccctttattg      4080
     ttgttgggtc cgttccgtac tggaatatgc ctgtgtcatc tggtctcctg tccaactatc      4140
     tctgctccaa aggattgaga ggatccagag acgttttaca aggatcgtat ttcgtaggtc      4200
     gctgggtcat cactctattc cgcttccttc gtatgacgat agatgcactc tattaggcct      4260
     tgccaagttg gagcaccgcc tctcggtcgc tcaggcttct ttcgtcgctg gcatattgct      4320
     caatacgatt gatactcctt cacttctgtc gcgcttacat ttgtatgcac cttgtcgcac      4380
     cttacgttat cgttttcgtc tccagttacc tatatgtcgt acacgttttg ctcgcaatga      4440
     gccttttgta agagctatgt cgtcttttaa tagtacttct gatctgttcg atttcaacat      4500
     atcctatcct gtctaccgat cccgtcttcg ctccttttcc gtaccataaa ctccttccaa      4560
     ctccttcgtg aataattgta tactatagtc agtaagcact attgctgtaa cccaacgtgg      4620
     ccgagcaatt aataaaataa aaataaataa ataaataaat aaata                      4665
//
ID   CR1-2_BTa   repbase;    DNA;    INV; 3967 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3967
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 619-619 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a one locus. Both termini are indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..1252
FT                 /product="CR1-2_BTa_1p"
FT                 /translation="MGEDVWLVSLSDKTSSGSRFECLADFASMSVCGKCQK
FT                 PCNRQAKDNTSCAICKLLFHNSCVGISIKNSYIKNWTCGECIALRNKKSIA
FT                 RSCSVDASPNMGRGERVRKTSTPTPVSSACFVNNLSASASDVDEVSMSAIK
FT                 ELFSQTNARLTAGLQKLETDLGESINLCHSKIDEFMELLKAQKCLIEQQGK
FT                 VIEEQHSQIVKLNKRVSELEVRTENQEQYSRANSLEIYGVPETKNEDPVRI
FT                 VVEICRKLGVQINETAIDACHRLGKQTNRTSAGIIVKFVRRLDKESILTKK
FT                 RVFRNLSTSQIGMKVDYPIFINQSLSPNRRILFAKAKELNRELKWKFLWVD
FT                 KAGRIKMRKHEKASVQVISTPSDLDNLKKFIVNKESLKRQSDLSISGRGED
FT                 STLVGDDSTPVNSVTPH"
FT   CDS           1312..3900
FT                 /product="CR1-2_BTa_2p"
FT                 /translation="MNRNMQVGLKMSGKMLFLTAVYFSPTANLNDFMEFVE
FT                 YMENNPELIIHDNVIVGDFNISDVKGINYDFTSGNANARSLSNLMALLNLR
FT                 SCNNVLNFQGKTLDLLLSSTHVVVQREFYPLLSEDVYHPCLLFKCDNLYVD
FT                 VARSVNIQRPYLNFKKANFKELYFRLSHANWEHLFSLTDPNAAVDYFYSVL
FT                 NDAIYSSVPMNMLITKSKFPTWFTRELIVMVKLKNRLARKRKLSKHYLNRF
FT                 RVLRSEIKRVSSRAYKMYMVKLQDSVKTNVKEFWNYVNSRRRTTMLRDTFK
FT                 LNDVRYPGANLAQGFADHFSSVFVSQKSAESSLLNQNHVRDPDLCHRENGY
FT                 PEVDMLNINFITIGEVRDALRMLKAKKSCGPDGIPSYITKGCADLLVTPLT
FT                 HIINTSIQSGVFPSKWKMANVSPIFKTGDEAEISNYRPIAILNACAKVYER
FT                 VLFKLVYNHVKNYISSYQHGFMPGRSTITNLLLFTDFISCELDSASRVDAI
FT                 YLDFKKAFDRVNHAVLLNKLRKFGFSNLLLKLFASYLQGRSLQVIFGHYKS
FT                 EEFFSNIGVPQGSNLGPLLFLLMINDLPDRVKHSKILLFADDVKLYNSIAN
FT                 EDDMACLQEDLVNISEWCRDNDMDLNAGKCKFITFTRKTDFPVLNYNINGI
FT                 ELERVNVIRDLGVLLDSELSFKYHIDNLVNAGNKLLGFVIRNTRYFTDIAT
FT                 SLLLFNSLVRSKLEYASEIWNPSYNTCDNSIERIQNKFLRYLYFKKHHVKF
FT                 PLGGHVGDLRSSFSVSKLLTRRKLADLVFLYKIVNSLINSSLILENVKLVV
FT                 PRSGLRPTSKLFYVPRVRTAHRQQAFLIRACALANELDGLDLFAVSVGAFA
FT                 SDCLGRLTLD"
XX
SQ   Sequence 3967 BP; 1195 A; 681 C; 844 G; 1247 T; 0 other;
     agtctggatc cgacagccga tgggtgaaga cgtgtggctc gtctctcttt ctgataagac        60
     tagtagcggt agtagatttg agtgtcttgc ggatttcgct agcatgagtg tgtgcggaaa       120
     gtgtcaaaag ccttgtaatc gccaggcaaa agacaatacc agttgtgcca tttgtaagct       180
     attattccat aattcatgtg ttggaattag catcaagaac tcctacatta aaaattggac       240
     ttgtggtgag tgcatcgcat tacgtaataa gaaaagcatt gcgcgttcct gtagtgttga       300
     cgcgtcgccc aacatgggac gcggcgaacg agtgaggaaa acgagtactc ctactcccgt       360
     gagctcggct tgttttgtca acaatctctc cgcgtccgct agtgatgtag atgaggttag       420
     catgagtgct atcaaggagt tgttttccca aacgaatgcg aggcttacgg ctggtctaca       480
     aaaattagag acggacttgg gtgagtcaat taacctgtgc cattccaaaa ttgatgaatt       540
     catggaactt ttgaaggctc aaaagtgttt aatagagcaa cagggcaagg tgatagagga       600
     acagcactcg caaatcgtga agctcaataa gagagtcagt gagcttgaag tgcgtactga       660
     aaaccaggag caatattctc gagcaaattc tcttgaaatt tacggagtgc cagaaaccaa       720
     aaatgaggac cccgtgcgga ttgtggtcga gatttgccgt aaacttggtg tgcagatcaa       780
     tgaaactgca attgatgcat gtcatcggct tggcaagcag actaacagaa cgagtgctgg       840
     aataattgtc aagtttgtga ggcgccttga taaggagtca attctaacca aaaaacgggt       900
     cttcaggaat ttgtctacaa gtcaaattgg tatgaaagtt gactatccca tattcattaa       960
     tcagtcactg tcacctaatc gtagaatcct ttttgctaaa gccaaggagc ttaatagaga      1020
     gctcaaatgg aaatttttgt gggtggacaa ggctggtagg attaagatga gaaagcatga      1080
     gaaagcttcg gtacaagtaa tatctacccc tagcgatttg gataatttaa agaaattcat      1140
     cgttaacaag gagtcgttaa aaagacaatc tgatttgagt ataagtggaa ggggtgagga      1200
     ttcaacctta gtgggggatg attcaactcc tgtcaattct gtgacaccac actgaacctt      1260
     gcactatctg tggtatgtac atagctctca tttttccttt ttccattcta aatgaatcgc      1320
     aatatgcagg ttggtctaaa aatgtctggt aaaatgttat tcttaacggc tgtctatttt      1380
     tccccaactg ccaatttaaa tgattttatg gaatttgtag agtacatgga aaataaccct      1440
     gaattaatca tccatgacaa tgtaatagta ggtgacttta atataagtga tgttaaagga      1500
     attaactatg acttcacatc ggggaatgct aacgctaggt ctctgagcaa tttaatggca      1560
     ctacttaatt taagatcttg taataatgtg ctgaattttc aaggtaaaac tctggactta      1620
     cttcttagta gtactcatgt agtggtacaa agggaatttt accctctctt atctgaggat      1680
     gtgtatcacc cttgcctcct ttttaaatgt gacaatctgt atgttgatgt tgccagatca      1740
     gtaaacatcc aacgccctta tcttaatttt aaaaaagcaa actttaagga actgtatttt      1800
     cgccttagtc atgcgaattg ggaacatctt tttagtttaa ctgatccaaa tgctgctgtg      1860
     gactactttt attcggtatt aaatgatgcc atatatagtt ctgtacctat gaacatgctc      1920
     attacaaagt ctaaattccc cacttggttc acacgagaat tgatcgtaat ggtcaagtta      1980
     aagaatagat tagcaaggaa aaggaaattg tccaaacact atttaaatag atttagggtg      2040
     ctcaggtctg aaataaaaag agtctctagt agggcgtata aaatgtatat ggtcaagtta      2100
     caagacagcg taaaaaccaa cgtcaaagag ttttggaatt atgtgaatag caggagaagg      2160
     actactatgt taagggatac atttaaactc aatgatgtta ggtacccagg tgctaactta      2220
     gctcagggat ttgctgatca cttttcctct gtctttgtat ctcaaaaatc tgctgagtca      2280
     agccttctaa atcaaaatca tgttagggat cctgatttgt gtcataggga aaatgggtac      2340
     ccggaagtag atatgctaaa tatcaacttt attacaatag gtgaagtgcg ggatgcgctg      2400
     cggatgttga aagcgaaaaa atcttgtggt ccggacggta tcccgtccta tatcacaaag      2460
     gggtgcgctg atttgttggt aacccctcta actcatatta ttaatacttc aattcaatct      2520
     ggtgttttcc catccaaatg gaaaatggct aacgtatccc cgattttcaa aacaggtgat      2580
     gaagcagaaa tatctaatta cagacccata gccatcttaa atgcctgtgc aaaagtatat      2640
     gagagagttt tgtttaagtt agtttataat catgtaaaaa attatatctc tagttaccaa      2700
     cacggtttta tgccaggcag atcgacaata actaacttac tgttgtttac tgacttcatc      2760
     tcatgtgaac tggattctgc ctctagagtt gatgcgatct accttgattt caaaaaagca      2820
     tttgacaggg taaatcatgc tgtattactt aataaattac gtaaatttgg tttttctaat      2880
     ttactgttaa aactgtttgc tagctatctt caaggtagat cattacaagt tatatttggt      2940
     cattacaaat ctgaagagtt tttcagtaac ataggggtgc cccaggggag caacttaggt      3000
     cccttgcttt tcctgttaat gattaatgat ttgcctgata gagttaaaca ttcgaaaatt      3060
     ttgttgtttg cggatgatgt taaactctac aattcaatag caaatgaaga tgatatggcg      3120
     tgcttgcagg aggacctggt caatatctcg gaatggtgca gagataatga tatggatcta      3180
     aatgccggca aatgcaaatt tattactttc actagaaaaa cagactttcc tgtactcaat      3240
     tataatatta atggaattga gttagaacga gttaacgtga taagagattt gggtgtgctt      3300
     ttagacagtg agctttcatt taagtaccac attgacaacc ttgtgaatgc aggaaacaaa      3360
     ttattgggtt ttgtaataag aaatactaga tatttcacgg acatagcaac atcattatta      3420
     ctgtttaatt cattagtgcg tagtaagttg gagtatgcat cagagatatg gaatccgtca      3480
     tataatacat gcgataacag cattgaaagg atacaaaata aattccttcg gtatttatat      3540
     tttaaaaagc accatgttaa gttccccctc ggaggacatg ttggggatct gaggtcctcg      3600
     ttctcggtct ctaaactcct aactagaagg aaattagcgg atttagtgtt cctctataag      3660
     attgtaaata gcttaataaa tagctctcta attttagaga atgtaaagct ggttgtaccg      3720
     cgatctggtc ttcgacctac atctaagtta ttttatgtcc cgagagtgag gacagcacat      3780
     cgccagcaag ccttcttaat tagggcgtgc gctctggcta atgaacttga cggtttggac      3840
     ttgtttgcag tttcggttgg agcttttgcc agtgactgtc tcgggcggct cactcttgat      3900
     taaatcactc tattttgttt tttgtttttt tgtctattgt gttttttttt tttttttttt      3960
     ttttttt                                                                3967
//
ID   CR1-2_CQ    repbase;    DNA;    INV; 4790 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4790
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 2-2 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1762
FT                 /product="CR1-2_CQ_1p"
FT                 /translation="MPCHINNCQITDASHLMQCSGSCGRSYHAACAGTQRN
FT                 YENEITNYMIPLCRDCQGVISVEVTTRAVLLQQQKLTCDIKALIDANFKAC
FT                 NAFKQMDNKIEVVQDEYEGIATLLGEMQQQLNRLDKKIDDSTLNVCKKVSS
FT                 ILDDVAPADNASTLVKIDALTSVTQQIGESQSIIGERLKNINTELIFLSGR
FT                 DPGPAVNEILEEIKAISANLPAGTEQTEAHHETLADELASSSASGSPNLKD
FT                 NSGWRTLGNKRLWKADWTDYDIRTARRKEQSKLRRKANQRKRRRQHRRSSY
FT                 TGTDDLDEIDYELDYSFFDNNFHLEQRNDRLHRLCHNQLAQHLVKQPVNLL
FT                 QNPQHSQSQQQQHNQQQQSQQQQHQQHIQLQQQQSQQRQHQPQQHQHQSQQ
FT                 QQQLHQLQQPYQDQQQQQQHQQLQQPSLQQHQQQTFQHLQQPQQAHPLQQQ
FT                 QQQQHQQQQPQPHQQHHQNLQQQLQAQSHQQQQPQFHQQHPPAQQQPQLHQ
FT                 QQQPTQAQLIHRSAQVYSETPSWMFRPAQRSSFSETGNFMN"
FT   CDS           1765..4701
FT                 /product="CR1-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTPSCEASDNLILTSPTTASNNLIEILTYCQNFNRMK
FT                 SAAKIDTINQAISGCLYTAILGTETSWDASILSEEVFSSNFNVFRNDRNLL
FT                 SSGKKSGGGVLVAIKTDFDSEKLDSDVFAHFEHVWVKAQIAKETHIFASVY
FT                 FPPLSPLSSYEDFFRNAEKIISSLDPESKIHLYGDFNLGAVDFMVDAENES
FT                 ILIPILGESDRLQXIFDKMYSLGLNQINHVKNQNNRFLDLLFTNMTEDFCV
FT                 TEANNPLWKNEAHHTAIEFSLFVHKANNRPDGSDYEEIPDYNNANYPLIKR
FT                 RLLEVDWKALLEKETNIELAVNTFYSIIYDILDESVPIRRKRRTIDKHPPW
FT                 FTREVKNLKNRKQKAHKAYKSNSQKLDEYLQICSQLEVTIQFEFEKYHRKV
FT                 ESEIKSDSKQFFNFVKSKLKSSNFPSNMSLDNKIGKNSAEICELFANFFES
FT                 VYTSFDENDRDRSYFSFIPQANNEITVDSLSLDEIQAALKALDSSKSTGPD
FT                 GISPKFAKNVASELASPLYWLFNLSLKSGIFPSAWKKSYLVPIFKSGKKSD
FT                 VKNYRGIALISCIPKLFEAIVNNKMFAQLKDYITQKQHGFFKGRSTATNLL
FT                 SFVNYTLNEMDNKNSVQTLYTDFSKAFDRVDIPMLLFKLDKIGIDSNLLSW
FT                 LKSYLTKRTQCVKFNGLISRLINVTSGVPQGSHLGPLLFILYVNDVSFIFK
FT                 HINVSIYADDMKLFMKIKDETDASRFQNEINIFFEWCCRSLLQLNIKKCTS
FT                 ILFSRKINKPNINVKLDNQIVETCSNVRDLGVILDSKMTFIEHYNTMVFKA
FT                 TNMLNFIKRFSYNFKDPYTLKTLFIAYVRSILEYCSVVWSPHIKTHETRIE
FT                 SVQKQFLLFALRKLGWTVFPLPSYIARCMLISLETLVKRREFASLSFVNDL
FT                 IANRINSPELLQTLNFYEPTRVLRAREPFALHFHRTDYAKHGPMNRMMETY
FT                 NKYNNIIDFTMTKSTMKKQFYNQR"
XX
SQ   Sequence 4790 BP; 1644 A; 1089 C; 803 G; 1248 T; 6 other;
     tcctwtgtwg tmagtcgtaa tcgagctgtc gtggtaatcg gtcgcatttt taattaagtc        60
     cgtgtcgttc cgcgcgcttt ttgaagtgta agcataaacc gcgaattcat tcattttttt       120
     gtgtcgactt aaccctctca actcgcgaaa catgccttgc catatcaata actgccaaat       180
     caccgacgca tcgcacttga tgcagtgttc cggttcgtgt ggcagaagtt accatgctgc       240
     gtgcgctggg acacagagga actacgagaa cgaaataact aattatatga tcccgctgtg       300
     ccgagactgc cagggagtta tttcggttga agtcacaact cgcgccgttc tcctgcaaca       360
     gcaaaagctg acttgcgata tmaaagctct gattgatgct aactttaagg cttgcaatgc       420
     cttcaagcaa atggacaaca aaatcgaagt tgttcaagat gaatatgagg gcattgccac       480
     cctccttggc gaaatgcagc agcaactcaa cagactggat aaaaaaatcg acgactctac       540
     attaaacgta tgcaaaaaag tttcgtcaat tttagatgac gtagcaccag cggacaacgc       600
     cagtacgttg gtcaaaatcg acgcactgac ctccgtcact cagcaaattg gtgagagtca       660
     gagcattatc ggtgaaagac ttaagaatat caacacggag ttgatttttt tgtctgggcg       720
     tgaccctggt cctgctgtca atgaaatcct cgaggagatt aaggcaatct cagccaatct       780
     cccggctggt actgagcaaa ccgaggctca tcacgaaact ctcgctgatg agttagcatc       840
     tagctcagct tcaggtagtc ccaatcttaa agacaattct ggatggcgca cactcggcaa       900
     taaacggcta tggaaagctg actggactga ctacgatatc cgaacagcac gccgaaagga       960
     gcaatctaaa ttgagacgta aagccaatca gcgaaaacgg cgtcggcaac ataggcgctc      1020
     cagctacacc gggacagacg acctcgatga gatcgattac gagctcgatt acagcttctt      1080
     tgacaacaat ttccacttag aacaacgtaa cgaccggctt caccgcctgt gccacaatca      1140
     gcttgcacaa cacttagtaa aacaaccagt caacttatta caaaatccac aacattcaca      1200
     atcccagcaa caacaacata atcaacaaca acaatcccag caacaacaac accaacagca      1260
     tatccagctc caacaacaac aatcccagca acgtcaacac caaccccagc agcatcaaca      1320
     tcaatcccaa caacagcaac aacttcatca actccagcaa ccctatcaag accaacaaca      1380
     gcagcagcaa catcaacaac ttcagcaacc atctctacag caacaccaac aacaaacatt      1440
     tcaacaccta cagcagccgc aacaagccca ccccctccag caacaacagc aacagcaaca      1500
     tcaacaacaa caaccacaac cccatcaaca acatcatcaa aatctacagc aacaactaca      1560
     agcccagtcc caccaacaac agcaaccwca atttcaccag caacacccac cggcacaaca      1620
     gcaaccacaa cttcatcaac agcaacagcc cacccaagct cagctaatac atagaagcgc      1680
     acaggtatac agtgaaacac ctagctggat gttccggcca gcgcaacgta gctctttttc      1740
     ggaaacagga aattttatga actaatgacg ccttcatgtg aagctagcga taatttaatt      1800
     ttgacaagtc caaccactgc gtctaataat ttaattgaaa ttttgactta ctgtcaaaac      1860
     ttcaatagaa tgaaaagtgc cgcaaaaatc gacactatta atcaagctat cagcggatgc      1920
     ctttatactg ctattcttgg cacggagacc agttgggacg ctagtatttt aagcgaagag      1980
     gttttctcta gcaactttaa tgtattcagg aatgatagaa atctgttatc atccgggaaa      2040
     aagtcaggag gcggcgtttt agtcgccatt aaaaccgatt ttgactcaga aaaacttgat      2100
     tctgacgttt ttgcacattt tgaacacgta tgggtcaaag ctcagattgc aaaagagact      2160
     cacatctttg catctgtgta ttttcccccg ttatcgccac tcagctcata tgaagatttc      2220
     ttcaggaacg ctgaaaaaat tatctccagt ctagatcccg aatccaaaat acatttgtat      2280
     ggcgatttca atctcggtgc tgtcgacttc atggttgacg cagaaaacga gtctattctt      2340
     attcccatct taggggaaag tgatagatta caaktaattt ttgataaaat gtactctctc      2400
     ggcctaaatc aaattaatca tgttaaaaat caaaataatc gctttcttga tcttcttttt      2460
     actaatatga ctgaagactt ctgtgtgact gaagcaaata atccactttg gaaaaatgaa      2520
     gctcatcaca cagcaattga attttcactt ttcgtgcata aggctaataa cagaccagat      2580
     ggttcagatt acgaagaaat tcctgattac aataatgcca attatccctt aatcaaacgt      2640
     agactattag aagttgattg gaaagcatta ctagagaaag aaacgaacat cgagctagca      2700
     gttaacactt tctatagcat tatatacgac atcctcgatg aaagcgtccc aatacgaaga      2760
     aaaagacgca caattgacaa acacccgcct tggtttacaa gagaggttaa aaaccttaaa      2820
     aatagaaaac aaaaagctca caaagcttac aaaagcaata gccaaaaact tgatgagtat      2880
     ctacaaatat gcagtcagtt agaagtcacc atccaatttg aatttgaaaa gtatcataga      2940
     aaggtagaat cggaaatcaa gagtgattcc aagcagtttt tcaattttgt caaatcaaaa      3000
     ttaaaaagta gtaattttcc gtcaaatatg tctctcgaca ataaaattgg caaaaacagt      3060
     gcagaaattt gtgaattatt cgcaaacttt tttgaaagcg tatacacctc ttttgatgaa      3120
     aacgatcgcg accgaagcta cttttccttt ataccccaag cgaataacga aataacagtc      3180
     gatagcttat ccttagatga aattcaggcg gctcttaaag ctcttgacag ttcaaaaagt      3240
     accggaccag atggaatatc tccaaaattt gcaaaaaatg tagcctctga actggcttct      3300
     ccgctttatt ggctatttaa tctatcatta aaatcaggaa tattcccaag tgcttggaag      3360
     aaatcatatt tagttccaat tttcaaatcc ggtaaaaaat ctgacgtgaa aaactaccgt      3420
     ggaattgctc ttatttcatg tattcccaag ctctttgagg caatagttaa caacaaaatg      3480
     tttgctcaat taaaagacta cataacacaa aaacagcatg gatttttcaa agggcgctca      3540
     accgcaacta atcttctctc gttcgtaaac tacacattga atgaaatgga taacaaaaac      3600
     tctgtacaga cactctatac tgactttagc aaagccttcg acagagtgga cattcctatg      3660
     cttcttttca aattggataa aatcggaatt gattctaatc tactttcatg gcttaaatct      3720
     tacttaacaa aacgcacgca atgtgttaaa tttaatggcc tcatatctag gctcatcaat      3780
     gttacttccg gggtacctca aggctctcat ttaggcccat tactttttat tctttacgta      3840
     aatgatgtat cctttatatt taagcatatc aacgtttcga tttacgcaga tgacatgaaa      3900
     ttgtttatga aaattaaaga cgaaactgac gcttcaagat tccagaacga aatcaacata      3960
     ttctttgaat ggtgctgtcg tagcctttta caacttaaca ttaaaaagtg tacatcgatc      4020
     ttgttcagca gaaaaataaa taagccaaat ataaacgtaa aactagacaa ccagatagtt      4080
     gaaacctgtt caaatgttag agatttagga gtcatacttg attctaaaat gactttcatc      4140
     gaacattaca acacgatggt attcaaagca actaatatgc tcaacttcat aaaacgattc      4200
     agttataact ttaaggaccc ctatacattg aaaacattgt tcatagctta tgttcgctct      4260
     attcttgaat attgtagcgt cgtgtggagt ccacacatca aaacacacga aacccgtatt      4320
     gaatcagtgc aaaaacaatt tttactattt gctcttcgta aactagggtg gacagtgttt      4380
     ccccttcctt cgtatattgc acgctgtatg ttaataagct tagaaacact tgtaaagcgt      4440
     cgtgaattcg cttctctctc gttcgtaaat gatcttattg caaaccgaat taattctcca      4500
     gagttgttac aaacattaaa tttctatgaa cccacacgcg tattgagagc acgtgagcca      4560
     ttcgcattgc attttcacag aactgactac gctaaacacg ggcccatgaa tagaatgatg      4620
     gaaacttata acaaatataa taacataatc gatttcacaa tgacaaaatc caccatgaaa      4680
     aaacagttct acaatcaaag atagatgttc cccccttgta attagaaact aagcaacgat      4740
     catgtagtct acgtatgttt gacgaataaa taaataaata aataaataaa                 4790
//
ID   CR1-2_DAn   repbase;    DNA;    INV; 4500 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4500
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 375-375 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           539..1522
FT                 /product="CR1-2_DAn_1p"
FT                 /translation="MDFKLVCALKSCNKTISSSQPTIHCWLCENVLHAKCA
FT                 GFTASVSDAISRRSGLHFCCDGCRAVQDEMRSFMRQTKSGFKELISGFRKI
FT                 NDQLCALDTQFSSLQLLNESPKRKKSAFSDVLGSNNLQPAQPTTMQPLISL
FT                 ATPRAGPEKNSASECLGLNEQLSDMSSVASLQVIPDPIIQTPVTVTKQGNK
FT                 PSGPPVRTDAAVLVTAAPKPLQVIPPSKHIFVSRLAPDTSEIDISAYIKAK
FT                 AKADIKVVDITKFKYSYTRHTSSFKIRVPLQMFKTICSASFWPENIFVQEH
FT                 QPSTVKKKITKPVGVKLPHVKATDQPSTSSSSISKN"
FT   CDS           1525..4362
FT                 /product="CR1-2_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSSLTLTYQNTRGLRSKLPKLYSDSSSFASHIIVFTE
FT                 TWLKPEILSSEVFPSRYTTFRCDRTLRRGGGVLISVDSKFASEEVKSQEFG
FT                 DIEFLCIKITLSDQSLYVTCSYIPPSSEPPTYWQHLSAIRLVFDRLSDGDQ
FT                 LIALGDFNIPELMWSNVDNSPSLQLNSHHDFPEGMFDMSLGQINHVRNSLG
FT                 RLLDLCFVSDPDGITLSRTLPLSNPEDPYHPTLEVSIENNYFFDLKSTVKS
FT                 QKVRFFRKADFMKLNKLILEFDWSDLLACEDINIALQKFYYTLNIFFDACV
FT                 PWKYPSASTNPPWYXRHLINLKNSMSRLLNKHRLSGCTVSYSRYLVARSNF
FT                 TVHNAECYRSYIRRCRIQFTQDPKQFYNFVNTKRKHVSFPPLLTFENSYAN
FT                 TDQAMADLFAQFFQTTYSPSSSLAQPYTYNIQSANLIFCPSFDQSGVLSDL
FT                 LKVKPVYSPGPDGVPGCVLKYCAEALCKPLVKLFNLSLETSIFPLMWKESF
FT                 IIPLHKKGKKSDAANYRGISKLSAIPKLFEKLITPHLQHLCSSIITPCQHG
FT                 FMKRRSTTTNLLELTSFITDGFRNGLQTDVIYTDFSKAFDSVNHSLLISKL
FT                 SLLGFPTDLLMWISSYLSGRTQRVFFKDVTSRVVRATSGVPQGSHLGPLLF
FT                 TLFINDLPLALTNSLVLMYADDVKLCLQYKFTSAQSRLQSDLDKLQNWCLA
FT                 NNLKLNGSKCKLMSFYRSSPHQAMYFLYGNALERLTQVNDLGVLLDLKLKF
FT                 TDHVSTMVNKAMGVLGFIKRWSKEFNDPYITKTLYTSLVRPILEYGSCVWS
FT                 PQYGVHQDHIESVQKNFLTFALRGLNWDANLYLPSYHSRLLLINLPTLTNR
FT                 RTMLGVMFLYNLIYGNIDSQHLLTRLNFNIPSRRTRNFRPLLLSHCSSTYA
FT                 QHDPFRVLCSDYNGLYHILSLCSTNNLKSLILTALSMQHSSS"
XX
SQ   Sequence 4500 BP; 1246 A; 1005 C; 792 G; 1454 T; 3 other;
     tcacttcctc tctttatctt aaagcggacg gacgtgtttt ttttgtgcgc actacgtttt        60
     tgtaaaattt gcaataagct ttctataaac aatcggtgtt tatttcttta ctgatataaa       120
     aacaaattgc aattttttag atccgtatcg cttcgcgtgt gcagtgatat atttggaggt       180
     aaaataataa tttatttaac ttactttcca aacatagccc tgctctgctt cttcatctcc       240
     tacggtgttg ttgctattct tttgcttcta ctctcgctca atagagattc ttatctctat       300
     ttctttaaat cttactaact tgcactaact gctctcttta atctcccctt ctcgtttcct       360
     tggtacagtg gttcaaggtt cctcattaat aaaatmaaat aatattttta aattaattat       420
     taattttttt aataattttt aataaattaa ttatttaaat ttttaataat ttttaataaa       480
     ttaattattt aattttaaat aatttttaat aaattaatta ttcaaatttt taataattat       540
     ggattttaaa ttggtctgtg cattaaagtc ttgcaataag acaatctcgt cttcccagcc       600
     taccatccat tgctggctct gtgaaaacgt tttacacgct aagtgtgccg ggttcacggc       660
     ctcagtgtcg gatgcaatct cgcgtaggtc tggactccac ttttgctgtg acggttgtcg       720
     tgctgttcag gacgaaatga ggtcgttcat gaggcagact aaaagcggtt tcaaggagtt       780
     gattagtggt tttcgaaaaa tcaatgacca actctgtgcg cttgatacac agtttagtag       840
     tcttcaacta ctaaatgagt ctccaaagcg taagaaatcc gcttttagtg atgtgctcgg       900
     gtcgaataat cttcagcctg ctcagccgac aactatgcag ccgcttatat ctctggccac       960
     cccaagggcc ggacctgaga aaaattcggc ttccgaatgt ctcggactca atgagcaatt      1020
     gtccgatatg tcctctgtgg catcgcttca agtgatccca gacccaataa ttcaaactcc      1080
     tgtaacagtc accaaacagg gtaataaacc gtccggaccc ccggtacgca ctgatgccgc      1140
     agtattagtt acggcggcac caaaaccctt gcaggtgatc ccaccatcaa aacacatttt      1200
     tgtttcccgg cttgcccctg atacttcgga gattgatatc tcggcttaca tcaaagccaa      1260
     agcaaaagcc gacataaagg tggtggatat tacaaaattc aaatattctt acaccaggca      1320
     cacgtcatct ttcaaaatac gtgtgccctt gcagatgttc aagacgatct gttccgccag      1380
     cttttggcca gagaacattt tcgtccaaga acatcagcca agtacggtga aaaaaaagat      1440
     aaccaaacct gtgggtgtaa aactcccaca tgttaaggcc actgatcaac cttccacctc      1500
     atcttcctca atctcaaaaa actaatgtct tcattaacac ttacctatca gaatacaaga      1560
     gggttacgta gtaaacttcc caaactgtat tctgatagtt cttcttttgc atcccacatt      1620
     attgtattta cagaaacttg gttaaagccg gagatcttaa gctccgaagt ttttcctagt      1680
     aggtacacca cttttagatg tgatagaact ttgcgaaggg gaggaggagt gctaatttct      1740
     gtagactcca aattcgcttc tgaagaggta aaatcacaag agtttggtga cattgaattt      1800
     ctttgcatca aaatcacttt gtccgatcaa tctttgtatg ttacctgttc gtacatacca      1860
     ccttcgtccg aaccgccaac atactggcaa catttgtccg ctattcgttt ggttttcgat      1920
     cgtctgtctg atggtgacca gctgatagct ctgggtgact ttaatatccc agaacttatg      1980
     tggtcaaatg ttgataattc accgtcttta cagcttaact cccaccatga cttccctgag      2040
     ggcatgttcg acatgtcact cgggcaaatt aaccacgtta gaaattcttt aggtcggctg      2100
     ttggacttat gtttcgtttc tgatcctgat ggaattactc tttccagaac tttgccmctt      2160
     tctaaccctg aggatccata tcatcccact cttgaggttt caatcgaaaa taattacttt      2220
     tttgacctta agtctacagt taaatctcag aaagttcgtt tctttcgtaa ggctgacttt      2280
     atgaaattaa acaagttaat tttggaattt gattggtctg atttactggc atgcgaggat      2340
     ataaacatcg cattacaaaa attttattac actttgaaca tatttttcga cgcttgcgtg      2400
     ccgtggaaat atccgtccgc ttcaacgaat ccgccttggt atwcaaggca ccttataaat      2460
     ttaaagaata gtatgagtag acttttaaac aaacatagat tatctggctg tacagttagt      2520
     tattcaagat acttagtagc tcggtccaat ttcaccgtgc ataacgcaga atgttatagg      2580
     agttatattc gccgctgcag gattcagttt actcaggatc cgaagcagtt ttataacttt      2640
     gtaaacacta agcgtaaaca tgtatctttt cccccactgc ttacgtttga gaactcttat      2700
     gcgaacaccg atcaggcaat ggccgatctc tttgcacagt tttttcaaac tacctattca      2760
     cctagcagca gtttagctca gccttacact tataatatcc aatcagccaa ccttatattt      2820
     tgcccatctt tcgatcaaag tggtgtgtta tcggatcttc ttaaggttaa gcccgtgtat      2880
     tcgccaggcc ctgatggagt accaggctgt gttctgaagt actgcgccga ggcactgtgc      2940
     aaaccgcttg ttaaactctt taatctatcg ctggaaactt cgatctttcc ccttatgtgg      3000
     aaggaatcct tcattattcc gctgcataaa aaagggaaaa aatccgacgc tgctaattat      3060
     agaggcatct ctaaattgtc agcaattcca aagctttttg aaaaacttat cactccacat      3120
     ttgcaacacc tatgtagttc aataataact ccgtgccagc atggcttcat gaagcgccgc      3180
     tccaccacta ccaacttatt ggagctaaca tcttttatca cggatggctt ccggaatggc      3240
     ttacaaacag acgtcatata cactgacttc agtaaagcat ttgactctgt taaccattcg      3300
     cttcttataa gtaaactcag tcttttggga ttcccaactg atcttcttat gtggatttcg      3360
     agctacttat cagggagaac ccaacgtgtt ttctttaaag atgttacctc gcgtgtagtc      3420
     cgcgccacat cgggggtgcc ccaaggaagc catcttggac ccctactttt tactctgttt      3480
     attaacgact tgccccttgc cttaactaat tcacttgtac ttatgtacgc tgatgacgtt      3540
     aagctatgcc ttcagtataa attcactagc gcccagtcta gacttcaatc cgatttggat      3600
     aaacttcaaa attggtgttt agcaaataac ctaaagctta atggatcgaa atgtaaactt      3660
     atgtcttttt accgatctag tcctcaccag gctatgtact ttctctatgg gaacgcctta      3720
     gaacgattaa ctcaggttaa cgatctaggt gtcctattag atttgaaact taaatttacc      3780
     gaccatgtat ctaccatggt taataaagct atgggtgtgc ttggttttat taaaagatgg      3840
     tcaaaagaat ttaatgaccc gtacataact aaaacgttat atacatcact ggtccgtccg      3900
     attcttgagt atggatcgtg tgtctggagt cctcaatatg gagtacacca agatcacatt      3960
     gaatctgtac aaaaaaactt ccttactttt gctcttaggg gacttaattg ggatgcaaat      4020
     ctttacctcc cctcttatca tagtagactt ttactaatca acttaccaac attaacaaat      4080
     cgtagaacga tgctgggtgt catgtttcta tataatctta tttatggaaa tatagacagc      4140
     cagcatttac taacacgttt aaactttaac attcctagta gaaggaccag aaactttcgt      4200
     cctctactcc tcagccattg tagttcgaca tatgcccaac acgatccgtt cagggtatta      4260
     tgttcggact acaatggtct ctaccacatc ttatcacttt gctctactaa caatcttaaa      4320
     tcgcttatat taaccgcctt atctatgcaa cactcttcct cgtaatatct ttctcctaat      4380
     cctcgcttat ctatctcgga tctattcccg cgattcgagc cgtacgttac gcggcagcgt      4440
     ccctcggtcg gttggacggg aggtgggctg tacgtatgca gtgggaaccg cgcaaaaaaa      4500
//
ID   CR1-2_DAzt  repbase;    DNA;    INV; 4800 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4800
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 872-872 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           566..1702
FT                 /product="CR1-2_DAzt_1p"
FT                 /translation="MSACCAKRCDGHRSVATRQTFIFCWLCDNTAHSSCAG
FT                 FGHIGGRVVDLIKTRCGLNWTCWDCRAVEADMRTFMRQTHNEFAAVHAEFR
FT                 KLQDKFNSMETHFRNLKILNESPKRRKVSSNLPSVHCSNSLAANDSHAPPN
FT                 SSPALIDFGARETDVYPSTSKKTAGSSIAGCSPVPVSAKDTQLDSNEHTVP
FT                 VIAQAVQPDITDQPVVGITVPPKEVVDTADSMEVEVVPSTPACTGSSARAI
FT                 PSGSPPRAEPASASPKNHVTPLDRSTLFAVAPLKSIFVSRLMESATDVMVR
FT                 DYIFSKLNINSSSGIVVTKFIFKEKRSISSFKILVPEKFVKYVLEPSFWPE
FT                 HTICHIFSSRSRPSQSAPRVGILPTPSNALPSLSKN"
FT   CDS           2068..4572
FT                 /product="CR1-2_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLHVDYLQSVLSQLNDLDRLIVLGDFNLPNVTWSPSN
FT                 DSNLMFPSMQHDFVDCLSDTSLGQVNGIRNSMSRTLDLVFTNDASSTLVCR
FT                 GSPLSLPEDPYHPTLSIDFLLPSSSHTKPFIKPSNIFCFKKADFLSLNTYL
FT                 SQSDWSFLDDFQDIESATNAFYSFIFSIFPMHVPVAIPSRNLSGPIWFTPR
FT                 LTNLKNLKSRMYKRFKKSGLQSDFSKYSIAKSRFSLFNTLCYNRYLTKCKL
FT                 NFKRDPKQFFRFVNSKRKSSQFPSSLHFNGRYADRDCDIADLFASFFQRCY
FT                 SVPSSNLPSNLASSNDFSSSYSYPIPLNSSNCILPPFIDYDGLLTHLKSCK
FT                 FSFSSGPDSVPSAVLKLCAESLCVPLLKLFNLSLETGVFPSVWKESYIVPF
FT                 HKKGSKSDVSNYRCISNLSAIPKLFEKIITSQLQHFCRSIFSESQHGFIKR
FT                 RSVSTNLLEFSTFVTSGFAKQFQTDVVYTDFSKAFDSVNHNLLIHKLSLLG
FT                 FPTTLLYWTDSYLSNRSQRVIFNSSLSIPVTVSSGVPQGSHLGPLLFNLFI
FT                 NDLPQMLVHSRVLMYADDVKLCFSYSDPLSPLSLQSDLDALNNWCLINFLP
FT                 LNISKCNIMTFHRNKPYLFDYSINNIILQRLFKVNDLGITFVPNLCFNSHI
FT                 STISNKAKGVLGFVKRWSKEFTDPYTTKLLYVSLVRPILEYGSCVWSPHYQ
FT                 KFQDMLESVQKQFLIFALRGLNWDPSTHLPSYESRLRLINLHSLKSRRTCQ
FT                 GVLFLHKLLSGEVESTALISLISINVPFRPTRHYFPLHLQLCLSNYLDYES
FT                 FRSLCRNYNKFFYLFSFDTSSNMVKIILTNNLM"
XX
SQ   Sequence 4800 BP; 1165 A; 1221 C; 774 G; 1639 T; 1 other;
     atcgttatcg atacatcgtt acggacggtc gtgctatacc tcgctcgcgc ttaaataact        60
     gctaaaaatt ataaatcttc tttcatagga aagtaatttg tgtttttacc ttgttctggt       120
     gttcctaacc gatcgtgcag tgtgttcgat tctagtgcaa acgtattacg cgtacttttg       180
     tgtatttatt ttcaatttct caattttctt ttcctattgt gctttctgta cttctctgca       240
     ctttcttaat cgcagctgtt tttgttgcta tctactgctc tctctgaatc gctctctggt       300
     tctatctacg ctcagcttat cagctctcat tccaacacac acgcaccgcg ttggccgctg       360
     ctttgtgctt gtctctctga tctttctatc gtctctctgt gtctcttgta tacttgccgt       420
     tattgcgttt gttttgttcg gtcttgcgcg cgcaattgtg aaacataagc taacgacaat       480
     atcactgtgt cacaccgact tatattttac ccttcttttc tttcattttc atatttattt       540
     tttttattgt ttttaataat aaaaaatgag cgcctgctgt gctaagcgtt gtgacggcca       600
     ccgttcggtt gccactcgcc aaacgttcat cttctgctgg ctgtgcgaca acacggctca       660
     ttctagctgc gcgggttttg gtcatatagg tggtcgcgtt gtcgatctga ttaagacccg       720
     ctgcggcctc aactggactt gttgggactg cagggcagtg gaagccgaca tgcgaacgtt       780
     tatgaggcag actcataacg aattcgccgc tgtccacgcc gaatttagaa agcttcagga       840
     taagttcaac tctatggaaa ctcattttcg aaatcttaaa attctaaatg agtctccaaa       900
     gagaagaaag gtttcatcca atctgcctag tgttcactgt tccaattctc ttgcagccaa       960
     tgactctcac gctcctccta atagttcgcc agccttgatt gattttggcg ccagggaaac      1020
     cgatgtttac ccatctacat cgaagaagac ggctggctct tcaatcgccg gctgttcacc      1080
     tgtgcccgtg tctgccaagg atacccaact ggacagtaat gaacataccg tgcctgtgat      1140
     tgcccaggct gtccaaccgg acattactga tcagccagtt gtaggcatta ccgtgccccc      1200
     taaggaagtc gtcgacactg ctgacagcat ggaggttgaa gtagtcccct ccacaccggc      1260
     ttgcactggc tcctcagcta gagctatccc atccggatct ccccctcggg ctgaacccgc      1320
     ctctgcctca cccaaaaatc atgtgacccc tctagaccga tctactctat ttgctgtcgc      1380
     tcctcttaaa tctatatttg tctctcgtct tatggaatcg gctacggatg tcatggttcg      1440
     ggattatatc ttctccaaac ttaatatcaa tagctcctct ggcattgttg ttactaaatt      1500
     catcttcaag gaaaaacgta gcatttcctc ctttaaaatt cttgtcccgg agaagtttgt      1560
     aaagtatgtg ttagaaccct ctttctggcc cgaacacact atctgtcaca tcttcagcag      1620
     ccgatctcga ccttcacaat ccgctcctcg ggtaggaatt cttcctacac catctaatgc      1680
     actaccatct ctctcaaaaa actgaattct tcccctcctc twaagatcac ttatcagaat      1740
     gtacgaggtc tgtgcagtaa gctcaccaaa ttacatgctg atagtgcaac ttttgattcc      1800
     gacattattg ccttctcgga aacgtggctc aatccctcaa tctcggattc cgagattttt      1860
     gttgacaatt ttaccatata tagatctgat cgaccaactc gaggtggcgg cgttctaatt      1920
     gctgttcgtt ctgacttaac ttcccatctc ttccccatcg atgagcccat cactattgaa      1980
     attatcgttg ttaaaatccg tctgcgctct tataatttat tcatatcatg ctcctacatc      2040
     ccaccgtcct ctgaatttac tacttatatg ctacacgttg actatcttca gtctgttctg      2100
     tctcagctca atgatttaga tcgtcttatt gtcctcggcg actttaatct cccaaacgtc      2160
     acttggtctc catccaatga ctcaaactta atgtttccat ctatgcagca tgatttcgtt      2220
     gattgtctgt ccgatacatc tttaggccag gtaaatggca tacgtaatag catgagcagg      2280
     acccttgatc ttgtcttcac taatgatgct tcgagcacgt tggtatgtcg aggatcgcct      2340
     ctatcactcc ctgaagaccc ataccatccc acactatcaa ttgatttcct gttgccttcc      2400
     tcaagccaca caaaaccctt tataaagccc tcgaatatat tttgctttaa gaaggctgat      2460
     tttctctcct tgaataccta cctatcccag tcggattggt cattccttga cgatttccaa      2520
     gatattgaat ctgctactaa tgcattctat agctttattt tttccatttt tcccatgcat      2580
     gttcctgtag ccataccctc cagaaatctt tctggcccta tctggttcac ccccagatta      2640
     acaaatctga agaatttaaa atcccgtatg tacaaaaggt ttaaaaaatc cggtttacaa      2700
     tctgactttt cgaagtactc gattgcaaaa tctagatttt ccttatttaa tactttgtgc      2760
     tataatagat acttgaccaa atgcaagctt aacttcaaac gcgaccctaa acaattcttc      2820
     aggtttgtta attctaagcg taaatcttcc caatttcctt cttctctaca ctttaatggt      2880
     cgatatgctg atagggattg tgacattgcc gatctcttcg cttccttttt tcaacgttgc      2940
     tactctgtcc cctcttctaa ccttccctct aacctagcct catcgaacga ctttagcagt      3000
     agttactcat atcctatccc tttaaatagt tctaactgta tccttccccc cttcatcgac      3060
     tatgatggac tcttaacaca tttaaaatcg tgcaagtttt cgttcagttc tgggccagac      3120
     tctgttccga gcgcagttct aaaactttgt gcagaatccc tttgcgtgcc tctcctaaaa      3180
     ctttttaatt tgtctctcga aactggtgtc tttccctccg tctggaaaga atcctatata      3240
     gttccctttc ataaaaaggg atctaaatcg gatgtatcca actaccgctg tatttccaac      3300
     ttatctgcca ttcctaaact tttcgaaaaa atcattactt ctcagctcca acatttttgt      3360
     aggtctatat tctctgaatc acagcatgga ttcattaaac gacgctctgt ctctactaac      3420
     ttacttgaat tttccacctt tgtaacttcg ggatttgcta aacagtttca aactgatgtc      3480
     gtttacactg actttagtaa agccttcgac tccgttaatc ataatctact aattcataaa      3540
     ctgtcccttt tagggtttcc gacaacgctt ctatactgga ccgattctta ccttagtaac      3600
     cgttctcaac gtgtcatctt taactcctct ctctctatac ctgttactgt ctcttcgggg      3660
     gttcctcaag gtagtcatct gggtccctta ctatttaacc tatttattaa cgatcttcct      3720
     caaatgttag ttcattcccg tgtcctaatg tatgctgatg acgttaagtt atgtttttcc      3780
     tacagtgacc ctttgtcacc actatctttg caatctgatc tggatgctct taataactgg      3840
     tgcttaatca actttctacc tcttaatatt tctaaatgca atataatgac gtttcatcgt      3900
     aataagccat acctcttcga ctactctatc aataacatta tcctacaacg cctcttcaaa      3960
     gttaatgact tgggcattac ctttgtacct aatctatgtt tcaactctca tatctctact      4020
     atctctaaca aagccaaagg agtccttgga tttgtcaaaa gatggtctaa ggaattcact      4080
     gatccgtata ccacaaaact cttgtatgtt tccctggttc ggcctatttt ggaatatggt      4140
     tcttgtgttt ggtctcctca ctaccaaaaa tttcaggata tgctcgaatc agttcaaaag      4200
     cagtttttga tctttgctct ccgcggactc aattgggacc cctctacaca tctcccttcg      4260
     tatgaaagta gattgcgctt aattaacctc cactctctta aatcccgtag aacctgccaa      4320
     ggagttctct tcctccataa gcttctctct ggtgaggttg aatcgactgc cctcatcagc      4380
     cttatcagta ttaatgttcc tttccgcccg actaggcatt actttcctct ccatctccaa      4440
     ctctgtcttt ctaactactt ggattatgaa tctttccgta gcctttgccg caactataac      4500
     aaatttttct atctgttttc ctttgatact agctctaata tggtcaaaat aatattaaca      4560
     aataacttaa tgtaatttaa atagctgtaa ttgtaaattg ttcggctacc ggcttatctc      4620
     taacctaaat ttggctgttg gtgggaccct ttaggccctt gagccgttaa tcagccccac      4680
     caggtctgag tatttgcttt tgccctttac ctttaattat tgatttgtaa tttccttacc      4740
     ctgacagttt aactgtacat tgttaaactt taaacaaaat aaacaaaata aacaaataaa      4800
//
ID   CR1-2_DBi   repbase;    DNA;    INV; 4504 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4504
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 922-922 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           605..1426
FT                 /product="CR1-2_DBi_1p"
FT                 /translation="MALVCSKKNCTLASSTKDPFIFCWLCDSMMHVKCAGF
FT                 TGRVKDFIDLNSGLMWSCGSCKEMVVEMSGFMKQTRDSLLNISGAFRQLNE
FT                 GFNTVCAQFNNKKLLTESPKRKKASLTAVNTTMESNPNPNLVAAVPVDTGX
FT                 SEPTVRMDTASSSVAHVSGLKASVLAKSKKSVPTVPIGTVGTVLDLSLVRF
FT                 RLLLGGVRNFQLFHKGSNYLFLDSPQIPHLRMFWNLYVKNSHPKILQLNNF
FT                 DFHMLVGYLLLKYLLRLTFLMFYFLKAFGLMMV"
FT   CDS           1506..3971
FT                 /product="CR1-2_DBi_2p"
FT                 /note="apurinic-like endonuclease adn reverse
FT                 transcriptase."
FT                 /translation="MLAYQNVRGLNMKLPKLYADSSAFTEDILAFTETWLK
FT                 PGISDSEVLANNFNTYRTDRHSRRGGGVLIAVTSSLTSERILIHIPNEIEF
FT                 LSVKVSLQSLSVFVTCSYIPPGSDLVIYEHHLSAIKSVLSLLSNRDLLIVL
FT                 GDFNLPDISWSPPTDSFVAMPLSAHDFVDGLLELSLQQVSFIKNSLRRQLD
FT                 LVFVSDPSEITVCRIDALVVPEDPYHPTMELTICLPCSDTLSPLVSPTKMR
FT                 CFRKCNYNKLNDMISHYNWTDLYNCTDIESATELFYTVLNTFFNECVPDGF
FT                 LSNLNRPPWFTNALQRLKNLKSNTYKKYKKSGRPADFSKYVVARTDFNVLN
FT                 SHCYSMYLSRCKFEFSNDPKQFYNFVNAKRKASALPSSVRLNSMEASTDSE
FT                 IADLFAEFFQTTYSSTAWSNSNYPNPLNRANCIFSPVITESSLVRDLATTT
FT                 PTXSPGPDGLPGCVLKFCASTICKPILKLFNLSISSSVFPSIWKDSFIIPL
FT                 HKKGAKADAQNYRGISKLSAIPKAFERIITSHLQHLCSSLISPCQHGFVKR
FT                 RSTTTNLLELSSIVINGFKKKMQTDIVYTDFSKAFDSVNHSLLLFKLDQLG
FT                 FPGNLLSWISSYLNGRTQRVIFKNAVSKLIYVTSGVPQGSHLGPLLFTLFI
FT                 NDLPSIITHSRVLMYADDVKLCLSYNDIASGFNLQSDIDCFHGWCEYNLLN
FT                 LNCLKCNVMTFYRGTPTFISYFLKNTPLDRIYSVNDLGVLLDPKLKFDCHI
FT                 MSTVNKAMSVLGFIKRWSKEFDDPYTTKLLFTSLVRPILEYCSSVWSPQYQ
FT                 VHIDRIESVQKNFSYLPCVV"
XX
SQ   Sequence 4504 BP; 1209 A; 910 C; 792 G; 1590 T; 3 other;
     cgatttagcg tcgcttgtga acagctgtgt ttacttttgt gctccgagtt tttgtctttt        60
     ccagtgattt ttgtgcgagt gttctgtgtg tatttattta caaagattag cctaacaatt       120
     gcgctagtaa ttctaaatag atctcccagt aaacgggtac gtgttaatag ttattttaac       180
     atttctatta gatttgttta atcccatagc tttgtttttg taacttacgc tcctaaactt       240
     gctaaaactc ttttactctc tctcaatctc cctcgctcta ttttataact gtaacctgct       300
     ctctatgcac ccgctgaatt tctagtagac tttttcggtg ctattttctg caactctctc       360
     tctctctctt gcttgattta ctttgtattt gttcgtgctg aaagttgtta gtgtcgcaca       420
     agccacgctc agtcgataga atattttttt ctctctctcg tgctctctta cgttttgata       480
     aattttcgcg atctcgcgct cttatttttt ttgtgttttg tgcctttgtg atttttgaat       540
     ttgatcccag tgccaaattt actcgaggta tttttgatat tttatttcat ttgtttgtct       600
     tataatggcc cttgtctgtt ccaagaaaaa ctgcacactt gcgtcttcaa cgaaagaccc       660
     ctttattttt tgctggctct gcgattcgat gatgcacgtc aaatgtgcag gattcaccgg       720
     cagagttaaa gattttattg atcttaactc tggtcttatg tggtcatgtg gttcctgcaa       780
     ggaaatggtg gttgagatga gcggctttat gaagcagact cgagacagcc tgttgaatat       840
     ctcgggtgct tttaggcaac tcaatgaggg gttcaatacc gtctgtgccc agtttaataa       900
     taaaaaatta ttaacmgagt cgcctaaacg caaaaaagcc agcttaaccg ccgttaatac       960
     caccatggaa tccaacccaa atccgaactt ggtagcagca gttcctgtcg acacagggkt      1020
     aagcgaacca actgtgcgta tggatacagc tagctcgagt gtagcccatg tttccggact      1080
     aaaagcttct gtactggcta agtcaaagaa atcggtgccg accgttccta taggtactgt      1140
     aggcaccgtc ctggatctca gcctagtgag gttcagactg ctgctggggg gcgtaagaaa      1200
     ctttcagttg ttccacaaag gaagcaatta tttgtttcta gattcacccc agataccaca      1260
     tctgaggatg ttctggaatt tatacgtgaa aaattcccat ccgaagatat tgcagttgaa      1320
     caatttcgat tttcatatgc tcgtaggata tcttctttta aaatatttgc tccgcctgac      1380
     gtttttaatg ttttactttc tgaaagcttt tggcttaatg atggtttagt aattaaagaa      1440
     tttgtcccaa ataaaccgag aacaaataac aggccctcca ctgtgtcaaa aaactaaaaa      1500
     gtttaatgtt ggcgtatcaa aatgttaggg gattaaatat gaagctaccc aagctttatg      1560
     ctgactcctc tgcatttaca gaagatattt tagcttttac ggaaacttgg ctgaaaccag      1620
     ggatatccga ctctgaagtt ctggctaata actttaatac ttataggacc gatcgccact      1680
     cacgtagggg gggcggtgtc ctgattgccg ttacctctag cctaacatct gaaagaattc      1740
     tcattcatat acccaatgaa attgaatttc taagtgtgaa agtttctttg caatctttat      1800
     ctgtttttgt tacatgttct tatattccac ctggctctga cctagtaatt tatgagcacc      1860
     atctgtctgc aataaaatct gttttatccc ttctttctaa cagagacctt ttgattgttt      1920
     taggtgactt taacctacct gatatttctt ggtctcctcc tactgactca tttgtcgcta      1980
     tgccgttatc cgcccatgat tttgtggatg gccttttaga attatcgtta cagcaagtaa      2040
     gctttataaa aaattcctta agaagacaat tagatcttgt gtttgtttca gacccgtctg      2100
     aaatcacagt atgtagaatt gacgctcttg ttgtacctga agacccatat catccaacta      2160
     tggaactgac aatttgcctc ccctgctctg ataccctctc tcctttagtt tctccaacta      2220
     aaatgagatg ttttcgtaaa tgtaactata ataaacttaa cgatatgatt tctcattata      2280
     attggacaga cttgtacaat tgtacagaca ttgaaagtgc cactgaacta ttctatacag      2340
     tcttaaatac gttttttaat gaatgcgtac ctgatgggtt tctttcaaac ctaaacaggc      2400
     ctccttggtt taccaatgcg cttcaaagac ttaaaaacct taaatctaac acttataaaa      2460
     agtataaaaa atcgggtaga ccagcagatt tttcgaaata tgttgtggct cgaacagatt      2520
     ttaatgttct caacagtcat tgctactcta tgtatctaag tcgatgtaaa tttgaatttt      2580
     caaacgatcc gaaacagttt tacaattttg ttaatgccaa gcgtaaggca tcggcattgc      2640
     cttcatcggt acgtctaaac tcaatggagg catcgacgga ttctgaaatt gctgatttat      2700
     ttgctgagtt tttccaaact acttatagtt cgacagcttg gtcaaattct aactacccta      2760
     atcccttaaa tagggcaaat tgtattttct cccctgtaat caccgaaagc tctctcgtaa      2820
     gagatttagc aacaacaacg ccaacatktt ctcccggtcc agatggactt cctggatgtg      2880
     tgcttaagtt ttgtgcgtca accatttgta aaccgattct taaacttttt aatttgtcta      2940
     tttcatcatc agtttttcct tctatctgga aggactcttt tattattcca ctccataaaa      3000
     aaggtgcgaa ggcagatgcc caaaattata gaggtatttc taaattgtcg gcaattccta      3060
     aagcatttga acgtattatc acttctcatt tgcaacattt atgttcctcg cttatatcac      3120
     cgtgtcagca tggttttgtt aagcgaagat cgaccaccac caaccttctt gaattgtcat      3180
     ctattgtaat aaatgggttt aagaaaaaaa tgcagactga cattgtatat acagatttta      3240
     gtaaggcctt tgactccgtt aaccactcac ttcttttatt taaattagat cagcttgggt      3300
     ttcctggtaa tctattatct tggatttcaa gttacttgaa tggtaggact cagagggtta      3360
     tattcaagaa tgctgtttca aaattgatct acgtgacatc tggagtgcct cagggtagtc      3420
     atttgggccc tttgctgttt actttgttta ttaacgatct tccctcaatc ataacacatt      3480
     ctcgtgtact aatgtatgct gatgatgtta agctttgttt atcatataat gatatagcgt      3540
     cgggatttaa cttacagtcg gatattgatt gttttcatgg atggtgtgag tacaaccttt      3600
     taaatttgaa ctgcctaaaa tgcaacgtta tgacttttta taggggtact cctacgttta      3660
     tcagttactt tcttaaaaat acgccacttg accgtatata ttcagttaac gatttaggtg      3720
     ttcttcttga ccctaaactt aaatttgact gccacattat gtccactgtt aacaaagcca      3780
     tgagtgttct tgggtttata aagcgttggt caaaagaatt tgatgaccct tatacgacca      3840
     aattattatt tacctccctt gtccgtccta ttttggaata ttgttcgtcg gtttggagtc      3900
     cacaatatca agtgcacatc gaccgtattg agtcggtaca aaaaaatttc tcttatttgc      3960
     cctgcgtagt ttgaactggg atcaaaacgt aaggcttcct tcctacgaga gtagattaca      4020
     attgcttaat ttacctacac ttgtaaatcg tagaacaatg cttggtacta tttttataca      4080
     aaatcttata agaggtgaca ttgattctgc agaactttta aaccgcctaa cattcaacgt      4140
     tcccgttaga ctaacacgaa attattatcc tctaaatttg ccacgatgta catcaaattt      4200
     ttgtctgcac gagccctttc gcgttctatg taataactat aataaacttt atcatttaat      4260
     ttgcatttca acatctatcc cggtattaaa aactaatatt ttaactcatt tgcttaattc      4320
     ttagttgtgc cttttatttt catttgtgtc ccgtctctat ttgttttatg tatgtatctt      4380
     cctcgcgaac tcgcattttt tgcccaaatt gataaaaggg ccccgcgcgt aacaagcacg      4440
     tgcttggtgt cgttgggcca cttgtttgta ctgttcgaag tgcatcaacg tccatatata      4500
     tata                                                                   4504
//
ID   CR1-2_DBp   repbase;    DNA;    INV; 4356 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4356
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 699-699 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           455..1450
FT                 /product="CR1-2_DBp_1p"
FT                 /translation="MSLTCTAKKCEFGGTITGDSYLSCWLCNNCSHIKCAG
FT                 GGHNGRISDLINKKIGLTWSCIACREIESEMRTFMKQTRNGFLDVRKQFSA
FT                 LNEQFLALETQFLGLKLLSESPRRKIPNNNLLTAKLLNTPTSHAVQVDEFS
FT                 TPNILPSPTXLPTYAVPVPRDLMSLPSGHSNIHPLQEAISVPSTNLEPPLI
FT                 LEPPSLDIVGQPPSLDNLPSALAVMSPRPLVGVAPEVRSSGLTLRAVAPRK
FT                 AIFVSRLMPDATVDDVKSHLLNHLKVAPNEIAVFKFNFKHKRSISSFKIVL
FT                 PDSYLEKALDPVAWPEHSIVHEFLAKDAQNPIPAETASKN"
FT   CDS           1396..4281
FT                 /product="CR1-2_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="IPSKRRSESYPCRNCFKKLNNIVFSCCYQNVRSILGK
FT                 LSQFFTKSASFDFDAIVLTETWLNSSVSDYEILVSKFIVFRLDRPTFAGGV
FT                 LIAVTNKYPSEIIPFTNEFGIEFIAVKILTGSSHIFLTCSYIPPMAEDIVY
FT                 FHHLDAIRSVSSLAKDRDLILIMGDFNLPIISWIPSEVDNSLLSSCHNDFI
FT                 DGLTDLALLQINPIHNTHGRFLDLIFSNVSSSVTVIRSPPLSLPEDIHHPT
FT                 LLASVLIDVPHNDACFNAKPRFKCFRKTDFIALRNHLAEIDWNFLSSINTI
FT                 EAATDSFYEIIHNALNKFVPEVPVSLSTKPPWYNKHLSRLKNRKSRAYKKF
FT                 LKSGSMCHQSNFLYVRNQFIILNDLLYKQYIRNCKVNFRNDPSSFYSFVNM
FT                 KRKSNLFPPSLSYKNISHSSEQGIANLFASFFQTTYSSDSYNHNSSYPYKL
FT                 PHINNIYFTKFRIQDLFEALSTIDISFSAGPDNVPSCVLRYCSDILCYPLT
FT                 ILFNLSLELACLPKRWNESFIIPLHKKGSKALIENYRGIAKLSAIPKLLEK
FT                 LVTFQLQHFCKSIISTSQHGFVKHRSTTTNLLEFTSFIHRGFLSRMQTDVV
FT                 YTDFSKAFDSVNHHLLLHKLCLLGFSPHIVQWLTSYLSNRTQRVLFKNSSS
FT                 QIINVSSGVPQGSHLGPLLFVLFVNDLPSVVNYATTFMYADDVKLCLSFSD
FT                 HFLHRHLQLDLNEVFLWCSNNLLLLNCSKCKVMTFNRSVPHIVSYSLGNNV
FT                 LDRVFLINDLGVIFDNKLSFNDHISLTVNKARGVLAFIKRWSKEFDDPFTT
FT                 KTLYVSLVRPILEYCSSVWSPQYFVHQRRIESVQKQFLLFALKGLNWDTAT
FT                 SLPSYNCRLKLLNLPPLKERRTCAGVMLLHVLILGQVDSQVLLEKLMFSVP
FT                 NRVTRSFRPLWLPISRSNFAEHDPFRVICKNYNSLSHLMSPELSLDVIKSK
FT                 IMEYLLT"
XX
SQ   Sequence 4356 BP; 1164 A; 995 C; 733 G; 1462 T; 2 other;
     tctgtatatt cacttgccgt acccggacgt gtttcttcga tcgctcttgc cagtttgcaa        60
     ttattttcga tcttgaactc aagctttctc cttctgcgac aagttgaaat ataacaatta       120
     atccctaaaa ataaattcga cttattaagt tcattgaact atttatttcc aatttataca       180
     tttaatcggt taaagttatc tctgttgcgc tttaactata ttctccaaca taagtctctc       240
     cgagctgtac tctccggacg taacccgtta cattcatagt tactgtggag tttgttgttc       300
     ttcacgacgc cgaaccttcg ttgcacatct cttttgtaac gtcgtctctt acatccgatc       360
     tgatcgtcca ctctcggcta cagagtgctt cagagagcct aaattcttta cacgctatta       420
     cagtggtctg cattccgtca aaaagaagcc aaaaatgagt cttacttgca cagcaaaaaa       480
     atgtgaattt ggtggaacca tcacgggtga ctcatacctg tcttgttggc tctgcaataa       540
     ctgctcacat attaaatgtg ctggaggagg acacaatgga cggataagtg accttatcaa       600
     caagaaaatt ggcctgacat ggtcttgcat cgcttgtaga gaaattgagt cagagatgcg       660
     gacttttatg aaacagacga gaaatggttt cctagatgtc cgcaagcaat tctcggccct       720
     taatgagcaa ttcctcgctc ttgaaactca attccttggg ctaaagttgt taagcgaatc       780
     ccccagacga aaaattccga acaacaacct gctgactgct aaattactga atacccctac       840
     atcccatgct gtacaagtcg atgaattttc aacaccaaac attttaccgt cgcctactwg       900
     tctacctact tatgctgttc cagtaccaag ggacttgatg agccttcctt cagggcactc       960
     taatattcat cccttgcaag aagcgatcag cgtaccgagt acaaatctcg agccacctct      1020
     catcttggag cctccatcgt tggacatcgt tggacaaccc ccatcgttgg acaacctacc      1080
     ctctgctcta gctgtgatgt ctccaaggcc tctggttggt gtggcgcctg aagttagatc      1140
     ttctggactt acgctgaggg cggttgctcc tcgtaaggcc atttttgtct ctcggcttat      1200
     gccggatgct actgttgatg atgtcaagag tcacctgtta aaccatctta aggtagctcc      1260
     taatgaaata gctgttttta agtttaactt taagcataag cgttctatat cttcttttaa      1320
     aatagttcta cctgattcct accttgaaaa agcacttgat cctgtagcct ggcctgagca      1380
     cagtatcgtt catgaattcc tagcaaaaga cgctcagaat cctatccctg cagaaactgc      1440
     ttcaaaaaac tgaataacat agtattttcc tgctgctatc aaaacgttag aagtattctg      1500
     ggtaagctga gccagttttt tacaaagagt gcttcttttg attttgatgc tatcgtgctt      1560
     actgaaactt ggcttaactc ctctgtctct gattatgaaa ttcttgtttc caaattcata      1620
     gtgtttcgat tggatcgtcc aacttttgca ggtggtgtcc tcattgctgt tactaataag      1680
     tacccttctg aaattattcc tttcacgaac gagttcggaa ttgagttcat tgcggtgaaa      1740
     attttaactg gctcgtctca tatttttctg acctgttcct acattcctcc catggctgaa      1800
     gatattgtgt actttcacca tcttgatgcc attaggtctg tctcttcgtt ggccaaggac      1860
     cgtgatttaa tcctaatcat gggagatttc aaccttccca tcatttcctg gatcccgtct      1920
     gaggtagaca attccttgct ttccagttgt cataacgact ttatcgatgg cttaaccgat      1980
     cttgccctgc tccaaattaa tccaattcat aacactcatg gcagatttct cgaccttatt      2040
     ttttctaatg tgtcatcctc tgtgacagtc attcggtccc cgccgctatc gcttcctgaa      2100
     gacattcacc accctacact attagcatcg gtgttaattg atgtgcctca caatgatgct      2160
     tgctttaatg ctaaacctcg tttcaaatgc ttcagaaaga ctgattttat tgcccttcgg      2220
     aatcatttag ctgaaatcga ttggaatttt ctttcatcta taaacacaat tgaagcagct      2280
     acggattcgt tttacgaaat aattcataat gccttgaaca aatttgttcc ggaagtccct      2340
     gtatcattgt ctacaaaacc accttggtat aataaacacc tttctcgtct taagaacagg      2400
     aaatccagag cttacaaaaa gtttcttaag tcaggatcga tgtgccacca gtcaaacttt      2460
     ctttatgttc gcaaccagtt tattattctc aacgatctac tctataagca gtatatcagg      2520
     aattgtaagg taaactttcg aaatgatcca agctccttct actcttttgt caatatgaaa      2580
     cgtaaatcaa atctttttcc tccttcccta tcatataaaa atatttcaca ttcttctgag      2640
     caaggtattg ctaatctctt tgcgtcattt tttcaaacca cctattcgtc cgattcatat      2700
     aaccacaatt cttcttatcc ttataaatta ccacatataa acaacattta ctttacaaaa      2760
     tttcgaattc aggatctgtt cgaagctctt tcaacaatag atatatcatt ctctgctggt      2820
     cctgacaatg ttcctagctg tgttctaagg tactgttctg atatcctttg ctatcctctc      2880
     actatcttat tcaacttatc cttggagctg gcatgtctcc ccaagagatg gaatgaatct      2940
     tttattattc cgcttcataa gaaaggctct aaagcactta ttgagaacta ccgggggatt      3000
     gctaagctat ctgcgattcc caaactgctt gagaaactgg ttactttcca actgcaacat      3060
     ttttgtaaaa gcattatttc cacttcacag catggttttg tcaagcatcg ctctaccaca      3120
     actaaccttc ttgaattcac ttcgtttatc cacagaggtt ttctgagccg catgcaaact      3180
     gatgtggtgt acactgactt tagtaaagcg tttgactctg tkaaccacca tctcctcctt      3240
     cataagctgt gtcttttggg gttttctcct catatagtac agtggttgac ctcttatcta      3300
     tcgaaccgca cgcagcgtgt tttgtttaaa aacagttcat cacagattat aaatgtttca      3360
     tctggtgtcc cacaaggtag tcacttagga cctcttctgt ttgttctttt tgtcaacgat      3420
     ttacctagtg ttgtaaacta tgctactaca tttatgtatg ctgatgatgt caagttatgt      3480
     ctttctttct cagaccattt ccttcataga cacttgcaac tagaccttaa cgaagtcttc      3540
     ttgtggtgct caaacaatct ccttttgctt aactgctcta agtgtaaggt tatgacgttc      3600
     aatcgcagtg tgcctcacat cgtttcgtac tctcttggga ataacgtctt agatcgtgtt      3660
     ttcctaatta acgatcttgg agtaattttt gacaataagt tgtccttcaa cgaccacata      3720
     tcactaacag tgaataaagc cagaggcgtg ctagctttta tcaaacgttg gtctaaagaa      3780
     tttgatgatc ctttcacaac taaaactcta tacgtatcgt tggttcgtcc tatcttggaa      3840
     tactgttcta gcgtttggag tccgcaatac tttgttcacc aaaggaggat tgaatcagtc      3900
     caaaagcagt ttctgctatt tgcgttaaaa ggcttaaact gggatactgc cacttccctc      3960
     ccgtcgtata attgccggtt aaaactacta aacctacctc ctttaaaaga gcgccgtact      4020
     tgtgctgggg ttatgctgct tcatgtgctt attcttggac aggttgactc acaagtactt      4080
     cttgaaaaat taatgttttc tgtgcctaat agagtaacta gatcattccg acccctttgg      4140
     ttaccaattt ctagatctaa ttttgcggaa cacgatccat tccgcgttat ttgtaaaaat      4200
     tataactcgt tatcccattt aatgtcccct gaactatccc tagatgtaat taaatccaaa      4260
     attatggaat atcttttaac ttaatttatc cttactctta gttataataa tatagaaata      4320
     acagttcatt gttaataata ataataaata aataaa                                4356
//
ID   CR1-2_DEl   repbase;    DNA;    INV; 3861 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3861
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 568-568 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3861 BP; 1095 A; 752 C; 658 G; 1353 T; 3 other;
     cgatttakcc tcgcttgtga tcggttgtgc ttatctcgtg ctctgtgatt ttgtcaagtt        60
     tggattaatt tctgaaagtc tggtgttttt tttaaatcaa gcatagcgta acttcattgt       120
     gtgtgtttgg ctaggttttc tatagctagg aactaggctt ttcttataaa tctgtactca       180
     ctattagagt tttaataatt ttgttttaaa ttgtctaatc cctgtgcact gttattgtaa       240
     tttcattctc ttgtgcatgc tttgccagtg ccctagtgtt ttgtttttgt aacattgcac       300
     attttatgat tatgtctgtt acctgctcca agaaaggttg ccagcttcca tctacatcaa       360
     aagatatatt atcttctgct ggctctgcga tacaatcatg catgcaaaat gtgcaggatt       420
     tgttggmaga gttacagata acattgacct gcggactggg ctcaagtggt catgtgagtc       480
     ctgcagggaa atggaacttg agatgtgtgg ctttcttttt ggagtattaa aacaactcac       540
     tgaatgtttc aacgcggtaa gtgaacggtt tagtagtaaa aaactgctta gtaagtcacc       600
     taagcgtaaa aaaccgagcc cattagaacg ggcgcttctt taaattctgt tcatttaccg       660
     gcacctagct tagcccggtg gatcaaaagc ttaacagcca gctgttccta atggtactgc       720
     gtgctctgaa gtactccctt catcagaaag tcggagtaaa aatgttcaag tgttcaaggt       780
     gttggtggtg gtaaaaagaa actttctgtt gttccccata ggaaacaatt atttgtttct       840
     cgatttaccc ccaaaccaca tctgatgatg ttatggagtt tattcaagaa aaatacccat       900
     ctccaaacat tacagttgaa caatttaaat tttcatacgc tcgcaagata tcctctttta       960
     aaatatctgt tcctccagaa gcttttaacg ttctaaataa taaaagtttt tggcctgatg      1020
     atgaactaat aataatttaa gaatttgttc ctaaaagaca aagaaataat aatcggcctc      1080
     cgattttaga gtctgttcca aaaaactgaa cacttctata tttctagcct atcaaaatgt      1140
     aaggggactt aatatgaagt tacctaggct gttcgctgac tcctctgcct ttaatgaaca      1200
     tattttagtc ttcacagaaa cttggctgaa accggagatt tccaactccg aagtttttcc      1260
     aaacaacttt aacacttata gaactgatcg cgtttctcgt aggggaaggc ggggtgctta      1320
     ttgctgttaa ctccagtctt acatcggaga taattcagac tgattacccc aatgaaatag      1380
     aatttgttag tgtaaaagtt tccttacatg ccttatctat ttttgtaacc tgggtctgac      1440
     attttaattt atgaacatca taattagcct gctattaaat ctgttctatc tctactttct      1500
     gacagggatc atttgattgt tttgggagat tttaatctcc cagatatatc ttggtcatct      1560
     cctactgact cacttgtttg cacgcctttg tcggatcatg actttgttga tggactttta      1620
     gacctatcat tacaacaaat tagctttatc cgtaactctt taaataggca attagatctt      1680
     gtatttgttt tggatccgtc tgaggtcgtt gtatctagaa ttgaccctct agttgtccca      1740
     gaggaccgat accatcccac aatggaattg acaatttccc tgccctgccc tgatacctat      1800
     tcccatttag tttgtgaaac taaaacgaaa tgcttccgca aatgacaact ggccaaacca      1860
     aacttataca attgcatgga tatggaaagt gccactgaat tattctatag cgttttaaac      1920
     acttttttaa tgcgttcctg acagtcttcc tccaagacat aacagacctc cgtggtttac      1980
     acaagagctt caaagactta aaacaaacac ttacaaaaag tacaaaagga cgggcaagcc      2040
     atctgatttt tcgaaatatg tggttgctcg atcggatttt aatgttctta acagtcaatg      2100
     ctattctatg tatttgaacc ggtgtaaaac cgaattttca aataatccga agcaatttta      2160
     taactttgta aatgtcaagc gaaaaaactc cgccttgcct tcattagtac gattaaactc      2220
     aactgaggcg tctactgact ctgaaattgc tgatttattt gccaagttct tccaaactac      2280
     ctatagtgcg gattcttgtc taaattcagt ttacccttac aatttaaaca ggtcaaattg      2340
     tatttttccc cggtaataac agaaagttct cttctaaagg atttggagac cacaacacca      2400
     acatactctc cagggccgga cgggcttcct gggtgcgtgc tctcaactat ttgtaaaccg      2460
     attcttaaac tgtttcaatt gtctacctca acatcagttt ttccaactat ctggaaagat      2520
     tcttttatta ttccactcca taaaaaggga ggaagtcgga tgttcaaaat tatagaggta      2580
     tttctaaatt gtctgcaata cctaaagcat ttgagcgcat tattacttct catttgcaac      2640
     atttgtgttc ctcactaata tcaccttatc aacatggttt tgttaagcga aggtctacca      2700
     cgaacctact tgaattgaca tctattatag ttaaaggatt taataataaa atgcagactg      2760
     atgttatata tacagatttt agtaaggctt ttgattctgt taaccattct cttcttttat      2820
     tgaaattaga tcagctcggg ttttcgaata atcttttaac ttggatttca agttatttga      2880
     atggaagaac tcagagggtt atttttaaaa acgcagtttc caatatgatt aacgtaacat      2940
     ctggagtgcc tcagggtagt catttggcca ctttattgct ttttcattaa ctcgttcatc      3000
     attmttctca taacacattc tcgagtatta atgtatgctg atgatgttaa actttgtttg      3060
     tcctataata atttgcaatc gggtttcggt ttacagtctg atattgattg ttttcagaga      3120
     tggtgtcaat ctaacctctt aaatctgaat tgccttaaat gtaacgtaat gactttttat      3180
     aggggtacgc cttcatttat aagctattct cttcataata tgccactgga ccgaatatat      3240
     tcttgggttt attaagcgat ggtcaaaaga atttgacgat ccttatacaa ctaaattatt      3300
     atttacttcc cttgtccgtc caaatttgga atattgcgct cccgtttgga gtccccaata      3360
     tcaagtacac attgatcgta ttgagtcggt acaaaaaaat cttcttttcg cccttcgtgg      3420
     tttgaactgg gatcaaaacg taaggttgcc ttcttactct agtagattac tattgcttaa      3480
     tttacctact cttgtaaatc gtagaatcat gcttggaact attttatgca caatcttgtc      3540
     aaaggtgata ttgactcata gaattggtaa gccgcttaac ttttaatgtg ccttttagac      3600
     caacccgcaa ctaccatcct cttaacttgc caagatgtac ctcaaatttt ggcctgcatg      3660
     aaccctttcg tgttctttgt aataattata ataatctata taatcaaatt tgcatttcaa      3720
     cctctatccc tgtcttaaaa actacagttt taacatattt gcaccgtact tagttttagt      3780
     ttttttataa atgtctctac attatgttat ttgtgttttc ctcgcgaact cgataactgc      3840
     ccactatgct aatagggccc g                                                3861
//
ID   CR1-2_DEu   repbase;    DNA;    INV; 4381 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4381
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 943-943 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..1371
FT                 /product="CR1-2_DEu_1p"
FT                 /translation="MSEIVCYLKSCNKIITTNQPSVLCWLCDNMVHAKCAN
FT                 FRATVSDVLARGDSGLHYCCESCRGTQREMRSFMRQTKNGFREVLGAFRKA
FT                 SDLLTALDTQFNNVQLLNESPKRKKSNSCVPQITSSLLAPTSYLQNTEVSP
FT                 QLFGTPLANTPVSTKNSESEFSGHDGRKSLDSLSASRLLAPTEPISININP
FT                 PDTPQGNFVPGLPACTGGAGSEPATPKPLKVIPPEKHIFVSRLSEDTSESD
FT                 VLAYIQARTKADIKVDNITKFKYHYNRIVSSFKIRVPSVEFDKMCSTKFWP
FT                 EHIFVQEHRPGHKKRKLIDLRR"
FT   CDS           1400..4243
FT                 /product="CR1-2_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="ANPRKKLTSSLILSYQNTRGLRTKLPTLFSESFSFAS
FT                 QIIVFTETWLVSEILSSEIFPSRYVIYRLDRSLGSGGGVLISVDSKLVSEE
FT                 INLQFGDIEFICVKLALPGRFLFITCSYIPPKSDPSTYELHLAAIQSVFTL
FT                 LSDVDQLVVLGDFNIPQINWSKNENSLALTPSSHNDFIAGMLDMTLEQINH
FT                 VKNSLGRLLDLCFISDSDSVYISRVPPLTRPEDLYHPTLELAIDVGPLQTT
FT                 EPTRAVKKVRCFSMSDFLKLNILISDFDWSDLYACNDMTSALNIFYHALNL
FT                 IFDICVPMRYPSRTDNPPWYTKGLSTLKNIKFRLQKKYLKTRTPLSYSQYL
FT                 IARSNFTVLNAQCYKNYLARCRTQFTQDPKQFYNFVKTKRRPKTFPSALTF
FT                 ENSTARTDQAIADMFAKFFQTTYSPSTTARQPYVYGVPQSNLVTRPFLSKS
FT                 GILKDLQSIKPTYSPGPDGVPGCVLRYCASSICNPLLKLFNLSLETTTFPP
FT                 IWKESFIIPLHKKGKTSDAGNYRGISKLSAIPKLFEKIIVPHLQHQCRSII
FT                 SPYQHGFMARRSTTTNLLEFTSYVITGFRKSLQTDVIYTDFSKAFDSVNHS
FT                 LLVHKLDLIGFPCDLLKWVESYLTGRTQRVLFKDVLSGPIYASSGVPQGSH
FT                 LGPLFFTLFINDLPIALTNSFILMYADDVKLCIQYNDACYQRKLQSDLNNF
FT                 QFWCSANLLNLNGSKCKVMTFSRSKPLISTYTLCGVTLDRIKLVDDLGVLL
FT                 DAKLTFSDHIFSMVNKARGVLGFIKRWSKEFNDPYVTKTLFVSLVRPILEY
FT                 GSCVWNPQYAVHQDRIESIQKSFLLFALRGQNWDANLHLPSYKSRLLLINL
FT                 PTLANRRTMLGVVFINNLISGDIDSQALIGRLNINVPARPTRNYIPLSLRH
FT                 CSSNFALHEPFRVLCSSYNTLYNIISNTSPTNIKIVLLNHLAHI"
XX
SQ   Sequence 4381 BP; 1216 A; 998 C; 783 G; 1384 T; 0 other;
     gagattctct tccgaagcga acggacgtgt ttttttctac tctcgttaac tttgttggct        60
     atttacgaat atacgcttaa accgatacga atttctttgt ataaataaaa ccttcagccg       120
     tttgccttcc gcgcagtgaa ctaaactgtg tagcttttgt ttcttttgtt taaactctca       180
     atttacttaa attattttca cattctccta tttctcgtct ttcgcgataa acggttcctc       240
     tcccgctcgc gcctctctcg tgttgtttat ctatacctta tcttgatttc aatctattcc       300
     cccgctccct cacacttctc atagtgtgca tatctaaaac ttatcttgtt tttattcttc       360
     tttttctgtt ctcgcacagt gggcttcttt cgattaaata gtgcttaaaa ataataatta       420
     taaatcatta tgtctgaaat tgtctgctac ttaaaatctt gtaacaaaat aattacaact       480
     aaccagccaa gcgttttgtg ttggctttgt gataatatgg ttcatgccaa atgtgccaat       540
     ttccgtgcca ccgtatcgga tgttttggcc cgaggcgatt ccggcttaca ttattgctgt       600
     gaaagttgtc gagggactca aagggaaatg agatctttta tgcggcagac aaaaaatggt       660
     tttcgtgagg tgctcggcgc ttttcgtaaa gccagcgatt tgctcacggc gctggacacc       720
     caatttaata atgtccaatt gttaaatgag tctccaaagc gtaaaaaatc aaactcttgt       780
     gtgccgcaga tcactagttc ccttctcgct cccacttctt accttcagaa cactgaagtg       840
     tcgccgcagc tgtttggaac gcctttggcc aacactccgg tgagtacgaa aaattcggaa       900
     tccgaatttt ctggacatga tggtaggaaa tcgttagata gtttgtctgc ttcaaggctc       960
     ctggctccta cagagccaat ctccattaac atcaacccac ccgatacacc gcaggggaat      1020
     ttcgtgcccg gactaccggc gtgcactggc ggtgcaggat cagaacctgc tacaccaaag      1080
     cccctaaagg taatcccacc tgagaaacat atatttgttt cccggctttc cgaggatacg      1140
     tctgagtcag acgtattggc atacatacaa gccagaacga aagccgacat taaggtggat      1200
     aacataacta aatttaaata tcattataac agaatagtat catcatttaa gattcgcgtc      1260
     ccctcggtgg aatttgacaa aatgtgctca accaagttct ggccggaaca cattttcgtc      1320
     caagaacatc gaccgggaca taaaaaaaga aaattaatcg acctgcggcg gtaaaactcc      1380
     ctcaaacaaa agccattgag caaaccctcg caaaaaacta acatcgtctc tcattctttc      1440
     ctatcagaac acaagggggt tgcgtactaa gcttcctact ttgttttctg agagcttttc      1500
     ttttgcatcc caaataattg tttttaccga aacatggctg gtttcggaaa ttcttagctc      1560
     tgaaattttt ccgagtaggt atgtaatata caggcttgat cgatcactcg gatctggggg      1620
     tggagtgtta atttctgtcg actctaaact tgtatccgag gagattaacc ttcaattcgg      1680
     cgatatcgaa ttcatttgtg ttaaacttgc gcttcctggt aggtttttat ttattacatg      1740
     ttcttacatc cctcccaagt ccgacccatc cacgtatgag ttgcacctag cggccataca      1800
     gtccgttttt acgttattat cagatgtgga tcagttagtg gttctgggtg attttaacat      1860
     accacaaatt aactggtcaa aaaatgaaaa tagtttagct ttaacacctt cctcacataa      1920
     tgattttatt gcaggtatgt tagacatgac cctggaacaa attaaccatg ttaaaaactc      1980
     tttaggtcgg ttactcgatc tatgctttat ctcagattcg gactccgtat atatatctag      2040
     ggttccacca cttacacgcc ctgaagatct ttatcatccc actctggagc tggcgatcga      2100
     tgttggacca ctccaaacga ctgagcctac tagggctgtc aaaaaggttc gatgttttag      2160
     catgtcagac tttcttaaac ttaatattct tatctctgat tttgactggt ccgatctcta      2220
     cgcatgcaat gatatgactt cagctttaaa catattctac catgcattaa acctaatttt      2280
     tgatatatgt gttccgatga ggtacccgtc cagaacggat aaccctcctt ggtataccaa      2340
     gggcttaagc accttaaaaa atataaagtt caggcttcag aagaaatact taaaaactag      2400
     aactccgctt agttactctc aatacttaat tgctcggtca aattttaccg tgcttaacgc      2460
     tcagtgttat aaaaattatt tagctcgttg taggacccaa tttacacagg atccgaaaca      2520
     gttttataat ttcgttaaga ctaagcgtag acctaaaacg tttccttcag cactaacgtt      2580
     tgaaaactca acggcgagaa ctgatcaggc aatagccgat atgttcgcca agttttttca      2640
     aaccacatat tcaccttcga caaccgctag gcagccttat gtctacggtg ttccacaatc      2700
     gaacctcgtc acgcgacctt ttctatctaa gagtggtatt cttaaggatc ttcagagtat      2760
     taagccgacc tactctccgg gccccgacgg cgttcccggc tgtgtgctta ggtactgcgc      2820
     gtcttccatt tgcaatcctc ttctcaaact gtttaacctc tcgcttgaaa cgactacgtt      2880
     tccccctatt tggaaggaat ctttcatcat tcctttacac aagaaaggga aaacttcgga      2940
     tgctggtaat tatagaggta tctctaaatt atcagcaatt cctaaactct ttgagaaaat      3000
     tattgtgccc catttgcaac accagtgtag atcaataata tctccatatc aacatggttt      3060
     tatggctcga cggtctacaa ctacaaactt gcttgaattt acctcttatg tcattactgg      3120
     gttccgaaaa agtcttcaga cagatgtcat ctacactgac tttagtaaag catttgactc      3180
     tgtaaatcac tcacttttag ttcataaact tgacttaatc ggattcccat gcgatcttct      3240
     taagtgggtt gaaagttatc tgactggtag aacgcaacgt gttttattta aagatgtctt      3300
     gtctggtccg atttatgctt catccggtgt ccctcaggga agccatttag gtccgctatt      3360
     tttcacatta ttcataaatg accttccaat cgctttaaca aattctttta ttttaatgta      3420
     cgcagatgat gtgaaacttt gtattcaata taatgatgcg tgctaccaga gaaaactaca      3480
     atctgacctt aacaactttc aattttggtg ctctgcaaac ttactaaatc ttaacggctc      3540
     taagtgtaaa gtaatgacct tcagtcgctc taagccgtta atatccactt atacgctttg      3600
     tggtgtaacc ctagatagaa ttaagctagt agacgactta ggtgtcctat tggatgccaa      3660
     acttacattt tccgaccaca ttttttccat ggttaacaaa gccagaggtg tgttaggttt      3720
     tataaaaaga tggtcgaaag aatttaatga cccttacgta accaaaactt tatttgtctc      3780
     tctcgttcgt ccgatcttag agtatggatc ttgcgtctgg aacccccagt acgcggtcca      3840
     ccaagaccgt atagaatcaa ttcaaaaaag ctttctctta tttgctcttc gtggccaaaa      3900
     ttgggatgca aacttacatc ttccctccta taaaagcaga ctattactaa taaacttacc      3960
     tacccttgct aaccgtagga caatgcttgg cgttgttttt attaacaatc ttattagtgg      4020
     ggacattgat agtcaagccc taataggtcg cttaaacatc aatgtgcccg ctagacccac      4080
     tagaaactat attcccttat ccttgagaca ttgcagctcg aactttgccc ttcatgaacc      4140
     atttagggta ttatgttcga gttacaatac cctctacaac attatatcca atacttctcc      4200
     tactaacata aaaatcgtct tactaaacca cttagctcat atttaattaa tttatttatt      4260
     taatattcca ctcggtacta tccccgtgtt ccgagccgta cgatagacgg cagcgcccct      4320
     cggtcggttg ggcgggaggt gggttgcacg ttaagcaacg ggagtcgcga aaaaaaaaaa      4380
     a                                                                      4381
//
ID   CR1-2_DF    repbase;    DNA;    INV; 3529 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3529
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 962-962 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..322
FT                 /product="CR1-2_DF_1p"
FT                 /translation="LAPNCLPPKGNFEAGLPAQVGVAEIQTVVPKPLSVVP
FT                 LKKQIFVSRLSPDQSSSDVLSYIQGQRPITLKWKNLTFLTLGIFHLSGSLS
FT                 RTSFFQPYVRAIFGRIVWW"
FT   CDS           403..3270
FT                 /product="CR1-2_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="TFIYIFLFLKKLTSSLLLSYQNARGLRSKLTKLHSDS
FT                 FSFASHIIVFTETWLKSEILNSEVFPGMYTIYRHDRPSKRGGGVLIAVEST
FT                 LTSEEVLFDELNSIEFICVKLSLPDSLIYITCSYIPPSSETSVYFNHLSVI
FT                 QSVSDKLSDRDQLVVLGDFNIPGTIWSPDERSNVLLPIAQNDFIDGLLDTS
FT                 LSQVNHIRNCLGRLLDLCFVSNPENVFLSRVAPXTQPEDPYHPTLEVTIDT
FT                 GTIIKEQSVKSAKRIYCFRKADFLRLRNLISCYNWSDLYTCNNMADAINIF
FT                 YTAIQTFFYSCVPKYYPSISSKPPWFNKELTHLRNVKSRLYRKFKDTGSHS
FT                 IFSKYLKARSNFTVLNAQYYKNYLNRCKVQFAQDPKQFYNFVNTKRKTSSF
FT                 PSSLSFENTTATSDQAIADLFAQFFQTTYSPHLPHYDQPYSYAVSKSNLVF
FT                 CPTLSESSLLCDLQRVKPVYSPGPDGIPGCVLKYCAEALCKPLLKLFTLSL
FT                 EMSQFPHMWKESFVIPLHKKGNKSDASNYRGISKLSAIPKLFEKVITPHLQ
FT                 HLCRSIISPCQHGFIKQRSTTTNLLEFTSFVIRGFKHNFQTDVIYTDFSKA
FT                 FDSVNHSLLIRKLDLLGFPVDLLEWILSYLNGRTQRVLFKNSLSCVLRVTS
FT                 GVPQGSHLGPLLFTLFINDLPLVITHSRVLMYADDVKLCLQYKDISCRSNL
FT                 QSDLDSFQKWCSDNLLNLNGSKCKLMTFCRTDPIRGAYTLSGCSLDRITQV
FT                 DDLGVLLDPKLKFSIHISSMVNKARSVLGFIKRWSKEFDDPYITKNLFISL
FT                 VRPILEYGSPVWSPQYGVHSDRIESVQKNFLLFALRRLNWDANLLLPSYSS
FT                 RLLIINLPSLANRRTMLGTVFMFNLICGKIDSPDLVSRLNFSVPSRLTRNY
FT                 IPLILNQCRSNYELHDPYRVLCSDYNRLYPIISISDSLPLLKRSLLTFLAQ
FT                 N"
XX
SQ   Sequence 3529 BP; 984 A; 758 C; 615 G; 1170 T; 2 other;
     acttgcccca aattgtttac cgccaaaagg gaactttgag gccggtttac cggctcaagt        60
     tggtgttgca gaaatacaaa ctgtagtgcc aaaacccctt tcagtggttc cacttaagaa       120
     acagattttc gtttctcggc tttcccctga tcaatcatca tccgatgtac tgtcttatat       180
     acaaggccaa aggccgataa cattaaagtg gaaaaattta acttttctta cgctcgggat       240
     atttcatctt tcaggatcac tgtcccggac gagctttttt caaccatatg ttcgggcaat       300
     ttttggccgg atagtatggt ggtaaaagag ttcgaagcta ggatcaaaaa taaaaaaaag       360
     gcccgtggga ataaaacttc cttcgagtgg ccagaccact aaaccttcat ctacatcttc       420
     ctcttcctca aaaaactaac atcaagcctt cttctttcct atcaaaatgc aaggggcttg       480
     cgtagcaagc taactaaatt gcattctgat agcttttctt ttgcatccca tattattgtg       540
     tttacagaaa cgtggttaaa gtcggagatt cttaactccg aagtttttcc aggtatgtac       600
     acaatataca ggcatgaccg gccttccaag cggggtggtg gagtcttaat tgcggttgag       660
     tccaccctca cttcggagga ggtgcttttt gatgagctca atagcataga atttatatgc       720
     gtaaagctgt cgcttcccga tagtcttatt tatataactt gctcctatat tccgccatcc       780
     tctgaaactt cagtttattt taatcatttg tctgtcatac agtctgtttc ggataagctt       840
     tctgataggg atcaattggt agttctagga gattttaata ttcctggaac tatttggtcc       900
     ccagatgaaa gatcaaatgt cctactgcct atagcacaaa atgactttat tgacggcttg       960
     cttgacactt cattatcgca agtcaatcat atacgaaatt gtctaggtcg tttactggac      1020
     ctctgttttg tatctaatcc tgaaaatgtg tttctctcca gggtagcacc gmttactcaa      1080
     cctgaagatc catatcatcc tactcttgag gtgacaatcg acacaggtac cataataaaa      1140
     gagcaatctg tcaagtctgc taaacgaatt tactgttttc gcaaggcaga ctttttgagg      1200
     ctaagaaatt taatatcttg ctataattgg tccgatcttt acacttgcaa taatatggcg      1260
     gatgccataa atatatttta tactgcaatc cagacttttt tttattcttg tgttccgaaa      1320
     tactatccgt ctatctctag caaacctcct tggttcaata aagagttgac acacttaaga      1380
     aatgtaaaat ccagacttta taggaaattt aaagataccg gttctcactc tatcttttca      1440
     aaatatttaa aagctcggtc aaattttacc gtgcttaatg ctcagtatta caaaaactat      1500
     ttaaaccgtt gcaaggtcca gtttgcgcag gatccgaaac agttttataa tttcgttaat      1560
     actaagcgta aaacatcttc tttcccttcc tcgttatcat ttgaaaatac tacggcaaca      1620
     tcggatcagg caatagccga tttatttgcc cagttttttc aaacaacata ctcacctcac      1680
     ttacctcact atgatcagcc ctattcttat gctgtatcca agtcgaattt agtattctgt      1740
     cccacgttaa gcgagagctc cctactttgc gatcttcagc gtgttaagcc tgtatattcg      1800
     ccaggccccg atggaattcc tggctgtgtg cttaaatatt gcgcggaagc cttgtgcaag      1860
     ccgcttctca aattgtttac cctctctttg gaaatgtcac agtttcccca tatgtggaag      1920
     gagtcttttg tcattcctct tcacaaaaaa ggtaacaaat cggatgcaag caattataga      1980
     ggtatctcta aattgtctgc cattcctaag ctttttgaaa aagttatcac ccctcacttg      2040
     cagcacctgt gtaggtcaat aatttcaccg tgtcaacacg gttttataaa acaaagatca      2100
     acaaccacta atctcttgga gtttacttca ttcgtgatta ggggttttaa acacaatttt      2160
     caaacagatg tcatttacac tgactttagt aaagcatttg actctgtaaa tcattcactt      2220
     cttataagga aacttgactt attaggtttc ccagttgatc ttctagaatg gatcttaagt      2280
     tatctgaatg gcaggacaca aagggtcctt tttaagaatt cactttcttg tgttctccga      2340
     gtcacctccg gcgtccctca agggagccac cttggcccgc tactatttac cttatttatt      2400
     aatgaccttc cattagtaat aactcactct cgtgtactta tgtacgcaga tgatgttaaa      2460
     ttgtgcttgc agtataagga catttcttgc cgttcgaatt tacaatccga tctagatagc      2520
     tttcaaaaat ggtgcagtga taacttactc aacttaaacg gctcaaagtg taagcttatg      2580
     accttttgtc gaactgaccc gatacggggg gcttacactt taagtggatg ctctttggac      2640
     agaataactc aggtggatga ccttggtgtt cttctggacc caaaattaaa attttctatc      2700
     catatttcgt ctatggtgaa taaagccagg agtgtgcttg gatttataaa aaggtggtca      2760
     aaggaatttg acgaccctta cataactaaa aatttattta tttcgcttgt ccgtccaatt      2820
     cttgaatacg gatcaccggt ctggagtccc caatatggag ttcattcgga tcgtattgaa      2880
     tcggtccaaa aaaatttttt actttttgcc ctacggcgcc taaattggga tgcaaacctt      2940
     ttattaccct cctactctag tagactactt ataattaatt taccctccct agccaaccgt      3000
     agaacgatgc ttggaacagt ttttatgttt aatcttattt gtggtaaaat tgatagcccc      3060
     gacttagtta gcaggctaaa cttttctgtt ccaagtagat taaccagaaa ttacatcccc      3120
     ctaattttaa atcaatgtag atctaactat gagctgcatg atccctacag agtattgtgt      3180
     tctgactata atagacttta tcctattata tctatttctg actctctgcc gctcttaaag      3240
     cgatctctcc tgactttttt agctcaaaat tagatcttat tgtcttcctc ctaattttcc      3300
     tcggcctttt tcttattttt ctaagtcgcg actctcctct cgtgaattta ttattttaaa      3360
     tttaaaatta aaataaaatt taacttaact taacttttct ttccttaatt tttttctttt      3420
     aaaaatcgcg tcaaaattat cgcgaatcgt gccgtacgat acacggcggt cgcccctcgg      3480
     tcggttgggc gggwaagtgg gccgtgggac tacgcgcgaa aaaaaaaaa                  3529
//
ID   CR1-2_DK    repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4560
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1329-1329 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..1333
FT                 /product="CR1-2_DK_1p"
FT                 /translation="MVSNXICDIKGCQKEVLADQPSLHCWLCDAVVHAKCL
FT                 SLTGRIADAISAKNGLRYCCHACREVEKDMLSFMRQTKSGFSELRVNFRKT
FT                 NDLFTXLDAQFSGMKLLSESPKRKKSAAGRLQLGEPQPPKIWHTPSAQPPT
FT                 PTPTPMVLRSGTAKDSAFEGAGAXMAAXPPXLLVESAAGSQSLTPQTSKKI
FT                 SAIPKGKNRAEPLAEVGNAALPKTLTAIPPLKTIFVSRLAPDLASEDVLAH
FT                 IXSKTQAKSVKVEKFNFSYPRDISSFKISVSLDLFDTICSGDFWPEHAVVK
FT                 EYEVKIKKKRPSRPAQTTVTAGVTAVPKN"
FT   CDS           1219..4179
FT                 /product="CR1-2_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LLARARCSQGVRGKDKEKTAFTAGTNHSDCGRHGSAK
FT                 KLNTSLLLSYQNTRGLRSKLSKLYSDSFSFASQVIVFTETWLKPEILSSEI
FT                 FPGKYTTYRLDRLSQRGGGVLIAVDSTLISELVQIDDLTGIEFICVKLSFP
FT                 GSFIYITCSYVPPSAEEPIYWKHLSAIQAVSNMLSDRDQLITLGDFNIPGA
FT                 RWSSDGTSNVLQTAAQHDLIDGLLDISLSQVNHVVNSLNRLLDLCFVSDPV
FT                 GVNLTRVDPLTLPEDPYHPTFEVTIDLGTVVKTKPDLSCSATKVRCFRKAN
FT                 FQRLDTLISQFNWSELYRCTDMASAVDIFYSAMNSFFALCVPLAYPSVSSK
FT                 PPWFTKELTRLKNVKSRLYNRYKRTGSPTVHSRYLSARSNFTVLNAQCYKS
FT                 YLTRCRVQFTQDPKQFYNFVNTKRKPNLHPSSLSFKNATANSDQAIADLFA
FT                 EFFKTTYCSSNSLDQTYSFDLPKSNLIFSPILTESSLSSDLHRVKPVYSPG
FT                 PDGIPGCVLRYCAGALCNPLLKLFTLSLETSEFPLIWKESFIIPLHKKGSK
FT                 SDASNYRGISKLSAIPKLFENVITPHLQHLCRSVISPCQHGFMRRRSTTTN
FT                 LLELTSFVIRGFQRNFQTDVIYTDFSKAFDSVNHSLLVRKLDLIGFPVDLL
FT                 KWILSYLSDRTQKVLFKNALSKFLRVTSGVPQGSHLGPLLFTLFINDLPLV
FT                 LTNSRVLMYADDVKLCLQYKDSSCQSDLQSDLNNFQAWCRANLLHLNSSKC
FT                 KLMTFSRVTPQFATYTLNDCALERISLVDDLGVRLDPKLSFSEHISCMVNK
FT                 AKGMLGFIKRWSKEFDSPYITKTLFTSLVRPILEYGSCVWSPQFGIHINRI
FT                 ESVQKNFLLFALRGLPWDADERLPSYSSRLLLINLPSLANRRTMLGVVFLH
FT                 NLINGDVESPFLLGQLNFHVPRLTSRTLIPLVVNHCRREFEVHEPFRVLCT
FT                 DYNRLSDIIIRSDSPSVLKTLILVELARSVSP"
XX
SQ   Sequence 4560 BP; 1163 A; 1049 C; 881 G; 1454 T; 13 other;
     ctttkgactt tcatagcgaa cggtcgtgtt tttgttttgc gctccgaact tttgtgttkc        60
     tttgcattca aaccaccggg gtccwgttta wattgttaaa atacaattcg taactttgcc       120
     gtttcgctac gcgagtgcat gtgcatgtgt ctttaagtgt ttaattaata tatatataat       180
     taatcacttt tagtttttgc gtttttgcgt tttcttatcc cctctttgtg ttgtcccgtt       240
     tatttgcttc tagcggcact taagcggctc caagctttcg tgtttctctg ctcacccacg       300
     cttacgctcc cgctctcttg ttttttttcg gtactgctta tcagcgcaca gtggttaaag       360
     gtttgtgaaa atggtttcaa atwttatttg cgatattaaa ggctgccaaa aggaggtttt       420
     ggcagatcag cccagccttc actgctggct ttgcgatgcg gtcgttcacg ctaagtgtct       480
     aagcttaacg ggccgtatcg ctgacgcaat ttctgccaaa aatggcttgc gctattgttg       540
     ccatgcctgt cgtgaggtgg agaaggatat gttatccttc atgcggcaaa ccaaaagcgg       600
     wtttagtgaa cttagggtca attttcgcaa aacaaacgac ctgttcacag mgctggacgc       660
     tcaatttagc ggcatgaagc tgctaagcga gtcgccaaag cgmaaaaaat ctgctgctgg       720
     tcggctgcag ttgggcgaac cccagccacc aaagatttgg cacactccct cggcacagcc       780
     cccgacaccg acgccaactc caatggtgtt aagatcggga acggctaaag attcggcatt       840
     cgaaggtgcc ggggcagwaa tggcagcagm tccgccastg ttattagttg agtccgctgc       900
     ggggtctcaa tctctgacac cgcagacttc aaaaaaaatc tcagctatcc caaagggcaa       960
     aaatagggct gaaccactag cagaagtcgg taatgctgcg ttaccaaaga ccctcaccgc      1020
     tattccacca ctaaaaacaa tatttgtttc tcggcttgcc cctgatctcg catcggaaga      1080
     tgtactagct catatackga gcaaaacaca agccaaaagt gtgaaagtgg aaaaattcaa      1140
     tttctcatac cccagagata tctcatcttt caagataagt gtctccctcg atctttttga      1200
     cacaatttgt tctggtgact tctggcccga gcacgctgta gtcaaggagt acgaggtaaa      1260
     gataaagaaa aaacggcctt cacggccggc acaaaccaca gtgactgcgg gcgtcacggc      1320
     agtgccaaaa aactaaatac ctccctccta ctttcctatc agaatactag aggcttacgc      1380
     agcaagctct ctaaattata ttctgatagc ttttcgtttg catcccaggt gattgtgttt      1440
     accgaaacct ggttaaagcc ggagattctc agctccgaaa tttttccggg taagtacaca      1500
     acttatagat tggaccgtct ttcccagcga ggtggtggag ttttaattgc cgttgactcc      1560
     acccttattt ccgaactggt tcaaattgac gatctcacag gtattgaatt tatctgtgta      1620
     aaactatcat ttccaggtag ttttatctat ataacctgtt cttacgttcc tccatctgct      1680
     gaagagccta tttattggaa acacctttcg gcaattcagg ctgtttccaa catgctttca      1740
     gatagagacc aactaataac tctaggagac ttcaatatac ctggagctcg ttggtcatca      1800
     gatggtacgt ccaatgtcct ccaaactgcg gcacagcatg acctcataga tggtttgctt      1860
     gacatttcgt tgtcccaagt taaccatgtc gtaaattctt taaatcgcct actagatctg      1920
     tgtttcgtct ctgatcctgt aggtgtaaac ttaacaagag tcgatccatt gacgcttccc      1980
     gaagaccctt accatcctac tttcgaagtg accatcgatt tggggactgt cgtaaagacc      2040
     aaacctgatt tgagttgctc agcgactaaa gttcgctgct tccgtaaagc aaattttcaa      2100
     aggctagata ccttgatttc ccaatttaat tggtctgaac tttacagatg tactgacatg      2160
     gcgtccgccg tggatatttt ttacagtgcc atgaattcgt tctttgcatt gtgtgttcct      2220
     ttagcctatc cgtcggtttc tagtaaacca ccttggttca ccaaagagct gacacgccta      2280
     aaaaacgtta agtctaggct ttataatcgc tataaacgca ccggatctcc tactgttcat      2340
     tcaaggtatc ttagtgctcg gtcgaatttc accgtgctta acgcgcaatg ttataaaagt      2400
     tatttaactc gctgtagggt tcagttcacg caggacccga aacagtttta taactttgtt      2460
     aacactaagc gaaaacccaa tttacatcct tcatcgcttt cgttcaagaa cgctacagca      2520
     aactctgatc aggccatcgc cgatctcttt gccgagtttt tcaaaactac gtattgttcc      2580
     tcgaatagct tagatcagac ttactctttt gatttgccca agtcgaacct aattttcagt      2640
     cctattttaa ccgaaagctc ccttagttcg gatcttcatc gtgtaaaacc agtttactca      2700
     ccgggtcccg atggaatacc aggctgcgtg ctcaggtatt gtgccggagc tctgtgcaat      2760
     ccccttctga aattgtttac cttatcttta gaaacctcag aatttcccct tatttggaag      2820
     gaatcattta tcattcctct ccacaaaaaa ggtagcaaat cggacgccag caactataga      2880
     ggaatctcta agttgtcggc aattccaaaa cttttcgaga atgtaattac tccccacttg      2940
     cagcatttat gcagatccgt aatttcacca tgtcagcatg gttttatgag gcgaagatcg      3000
     accactacaa atctcctgga actcacctct ttcgttatta gaggtttcca acgtaacttt      3060
     caaaccgacg tgatttacac agacttcagt aaagcttttg actcggttaa tcactctctt      3120
     cttgtaagga agcttgactt aatcgggttt cctgtcgatc ttcttaaatg gattttgagc      3180
     tatttgagtg acagaactca aaaggttctg tttaaaaatg ctctatccaa attcctcaga      3240
     gtcacttctg gcgtcccaca gggtagccac ctcggcccgc tgctatttac attgtttatc      3300
     aatgacctcc cgctggttct aacgaattct agagtactta tgtacgctga tgacgttaag      3360
     ctatgcttgc agtataagga cagctcttgc cagtcagacc tgcaatcgga tcttaataac      3420
     tttcaagcat ggtgtcgtgc taatttatta catctcaata gctctaaatg caagctgatg      3480
     acattttcac gtgtcactcc ccagtttgcc acttatacgc taaatgattg cgctcttgaa      3540
     agaatatctc ttgttgatga tttaggcgtt cgcttagacc ctaaactttc gttctctgaa      3600
     catatttcgt gcatggttaa taaagccaaa ggcatgctcg gttttattaa gaggtggtcg      3660
     aaggaattcg attcccctta tataacgaag acccttttta cttcgttagt tcgccctata      3720
     ttggagtatg gttcatgcgt ctggagtcct caattcggaa tccatattaa ccgtattgaa      3780
     tctgtacaaa agaacttttt acttttcgcc ctccgtggcc taccttggga tgctgatgag      3840
     aggctaccgt cstattcaag tagactccta ttaattaact taccctccct agctaaccgt      3900
     agaacgatgc ttggtgtcgt attccttcat aacctaataa acggtgatgt tgagagcccc      3960
     tttcttttag ggcagcttaa cttccacgtt ccccgactaa catctagaac ccttatccct      4020
     ttagtagtaa atcactgtag gcgggagttt gaagtacatg aaccctttag ggttttatgt      4080
     acggattaca accgcctctc tgacattata attcgtagcg atagcccttc cgtactaaaa      4140
     actttaatac ttgttgagtt agctcgtagt gtatcaccgt agtctaattt tgcatgcgtt      4200
     tcttatttat ttatcgtagt tatttagtta cattatatta atttttttta atatttattt      4260
     tgcatgcgtt tttatttatt tatcgtagtt attatttagt tacatatatt atattttttt      4320
     atatttattt tgcatgcgtt tttacttttt atttatatat ttatagtata ttatattttt      4380
     ttcttattaa ttttattttt gtactctcgt aacgtttcct cgttcttttc ttccttcatt      4440
     caccgcgtct atctagttcg cgattcgtgc cgtacgtcac gcggctgcgc ccctcggtcg      4500
     gttgggcggg aggtggaagc gggaccccgc gcgaaaaaaa aaaaaaaaaa aaaaaaaaaa      4560
//
ID   CR1-2_DPer  repbase;    DNA;    INV; 3331 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3331
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1644-1644 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. Likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..330
FT                 /product="CR1-2_DPer_1p"
FT                 /translation="SKPIFVSRLMASATEVMVRNFILSKLNIDSSAGLVVT
FT                 KFNFKVKRNISSFKILVPDKHVNSLLDPSFWPVHTICHLFTNRPTSPDHRV
FT                 GILPTPSAPSATPSATSSVAKN"
FT   CDS           183..2978
FT                 /product="CR1-2_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FARPLFLAGAYDLSPLYKSSHQPGSSSRYSSNSICSI
FT                 CNSVCYIFCSKKLASPSTLKIAYQNVRGLGSKLNKLHTDSATFEADIIAFS
FT                 ETWLHPSISDSEILIDKFNIYRSDRPSRGGGVLIAVRSDITSQLFSVEAHN
FT                 NIEIIVVKLRLSSINLFISCSYIPPSSEFSTYMLHAALFQTVSSQLNESDF
FT                 LIVLGDFNLPNISWSPSKDSNQMFPIIQHDFVDSLSDSSLGQINGICNSIG
FT                 RILDLVFTTDSTNTLVRRGSPLSFPEDLYHPTLEIDVQLPSPGPTKSCIKP
FT                 SAIFCFKRADFTSLNSALSLIDWSFLDDFREIEPXTXAFYSTVFSIFPTFV
FT                 PLVSPLRNLSGPIWFTPRLVNLRNIKSRLYKRFKLSGSQSDFSKYSIAKSK
FT                 FSICNTLCYNSYLAKCKLNFKRDPKQFFKFVNSKRNSSQYPSSLHLNGTYA
FT                 DNNSDIANLFASFFQLCYSAPSNNMPSILASPHDYPAXHSYPIPFNSSSCI
FT                 HPPFIDYDGLLTNLKSCKFSFSTGPDLVPSAVLKLCADSLCVPLLKLFNLS
FT                 LELGDFPTVWKESYIIPIHKKGSKSDVSNYRCISNLSAIPKLFEKIITSQL
FT                 QHFCSSLLSESQHGFVKRRSVSSNLLEFSSFVTAGFAKQCQTDVVYTDFSK
FT                 AFDSVNHNLLIHKLSLLGFPTKLLHWTNAYLCNRSQRVCFQSSLSKPVFVS
FT                 SGVPQGSHLGPLLFNLFINDLPQVLTNSRVLMYADDVKLCFSYSDPVSPLF
FT                 LQSDLDALNNWCTINALPLNISKCNVMTFHRNKPYLFDFTINNISLERLYK
FT                 VNDLGIIFVPNLCFLILIYPLFRIKPKESLALSKDGRRNFLTPIPLNYSTF
FT                 LLYGLSWNMVPVSGLPITKNIKICLSPFKNNSLSLPCADLIGTPLVIFLLM
FT                 RVGCASLTCTLLKAVELVMEFSFSTNFS"
XX
SQ   Sequence 3331 BP; 822 A; 873 C; 491 G; 1142 T; 3 other;
     tcaaaaccta ttttcgtctc tcgactcatg gcatcggcta cggaggtcat ggtccgaaac        60
     tttatattgt ctaaactcaa catagatagt tctgcgggtc tcgtagttac caaatttaac       120
     ttcaaggtca agcgaaacat ctcctctttt aaaattctcg tccctgataa gcatgttaat       180
     agtttgctcg acccctcttt ctggccggtg catacgattt gtcacctctt tacaaatcgt       240
     cccaccagcc cggatcatcg agtaggtatt cttccaactc catctgctcc atctgcaact       300
     ccgtctgcta catcttctgt agcaaaaaac tagcttcccc tagtacgtta aagattgcct       360
     atcagaacgt tcgtggcttg ggcagcaagc tcaacaagtt acatactgat agtgcaactt       420
     ttgaggccga cattatcgct ttctccgaaa cctggcttca tccctcaatc tctgattctg       480
     aaatccttat tgacaaattt aacatttata gatcggatcg tccatctcgt ggtggtggtg       540
     tcctgattgc tgtccgttct gacataacat cccaactttt ttctgtcgaa gctcataaca       600
     atattgaaat tatagtagtt aagcttcgac tctcctcgat aaatctattt atatcgtgct       660
     cttacatccc accgtcctct gaattttcaa cctacatgct tcacgcagcc ctttttcaaa       720
     ctgtttcgtc ccaacttaat gagtccgatt ttcttatcgt cctcggagat ttcaatcttc       780
     caaatatttc ctggtctcca tccaaagact ccaaccagat gttcccaatc atacagcacg       840
     atttcgttga ttctctgtcc gactcatcat tgggtcagat aaacggcata tgcaatagca       900
     ttggtaggat tttagacctt gtctttacta ccgactctac gaacacttta gtacgccgag       960
     gttcccctct atcttttccc gaagaccttt accatcctac cctggaaata gatgtccagc      1020
     tgccttcacc tggtcccacc aaatcctgca taaagccttc agctatattt tgcttcaaga      1080
     gggctgattt tacctctttg aatagcgcac tttctctgat agattggtca ttcctcgacg      1140
     actttcgtga gatcgagccc gmcactmacg ctttctatag cactgttttt tccatctttc      1200
     ctacctttgt tccattagtt tcccctctca gaaatctttc tggccctatt tggttcactc      1260
     cgcggctagt aaacctaagg aatataaaat ctcgtttata taagaggttt aaactgtctg      1320
     gctcgcagtc agatttctct aagtattcaa ttgcaaaatc taaattttca atttgtaata      1380
     ccctatgcta taatagttat ttggcaaaat gtaagctcaa ctttaaacga gatcctaaac      1440
     aattctttaa gtttgttaac tctaaacgta attcttcaca atatccctct tctttacact      1500
     tgaatggtac ttacgcagat aacaattccg atatcgctaa cctatttgct tcattttttc      1560
     aactttgcta ctctgctcct tctaataaca tgccctctat tctcgcctca ccccacgact      1620
     atcctgcckc gcactcatat cctatccctt ttaatagttc aagttgtatc caccccccct      1680
     ttattgatta tgatggcctt ctaactaatt taaaatcatg taaattttct ttctccactg      1740
     gtccagattt ggttcccagt gccgtgctca aactctgtgc ggattctctt tgcgtgcccc      1800
     tcttgaaact gttcaacctc tctctcgagc ttggtgattt tcccaccgtc tggaaagaat      1860
     cctacataat tcctattcat aaaaaggggt ctaaatcaga cgtctcaaac taccgttgta      1920
     tctccaattt atctgccatt cctaaactct tcgaaaaaat tattacttct cagctccaac      1980
     acttttgtag ttccctgtta tcagaatcac agcacggatt tgtaaaacgt cgctccgttt      2040
     cgtctaacct ccttgaattt tcctccttcg taactgccgg atttgcaaag caatgtcaaa      2100
     ctgacgtagt ttatactgat tttagtaaag ctttcgattc agttaatcac aatctcctca      2160
     tccacaaact atctctacta ggatttccga ctaaacttct tcactggact aatgcgtacc      2220
     tttgcaatcg ttctcagcgt gtctgcttcc aatcttctct ttctaaacca gtttttgtct      2280
     cttcgggtgt gccgcaaggt agccatctcg ggcccttatt atttaacctc tttatcaacg      2340
     atcttcccca agttttaacg aattcacgag tcctaatgta tgctgacgat gtcaagctat      2400
     gtttttccta cagcgatccg gtgtccccgt tatttcttca atcagatctc gacgctctca      2460
     acaattggtg tactattaac gctcttcctc ttaacatttc caaatgtaac gtcatgacct      2520
     tccatcgcaa caagccttac ctttttgact ttacaattaa taacatttcc ttggaacgcc      2580
     tgtacaaagt taatgactta ggcattatct tcgttccgaa cttatgtttt ttaattctca      2640
     tatatccgct atttcgaata aagccaaagg agtccttggc tttatcaaaa gatggtcgaa      2700
     ggaattttct gacccctata ccactaaact actctacgtt tctcttgtac ggcctatctt      2760
     ggaatatggt tcctgtatct ggtctcccca ttaccaaaaa tatcaagata tgcttgagtc      2820
     cgttcaaaaa caattcctta tctttgccct gcgcggactt aattgggacc cctctcgtca      2880
     tcttccttct tatgagagtc ggctgcgcct cattaacttg cactctcttg aaagccgtag      2940
     aacttgtcat ggaattctct ttctccacaa acttctccta ggcgaggttg aatcttcggc      3000
     cctcattagc cttatcagaa ttgctgtccc atcccgcccg actaggcatt actttcctct      3060
     ccgtcttcct ctctgtcctt caaactactc tgaccatgaa tctttccgta gcctttgccg      3120
     cgattacaat aaatttttcc atcttttttc ctttgatact tgcgcttcca aagtaaaatc      3180
     ttctttaatg aataatttaa gttaacttct ttcggccttg cattgtgtta ccgtactttc      3240
     cagtagcaga taatcttatg ttttgtacat tcctattttt acacagttta actgtccata      3300
     gttgaactct aaacattaaa cattaaacat t                                     3331
//
ID   CR1-2_DRh   repbase;    DNA;    INV; 4397 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4397
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1676-1676 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. 5'-end uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           395..1411
FT                 /product="CR1-2_DRh_1p"
FT                 /translation="MNNKNLVCFCKKCSLVIRADQSNMTCWLCENMVHTKC
FT                 AGFTGRTSDDLSKGPNLQFCCDACVEVANEMKSFMRQTKGGLMGLISCFGV
FT                 ARDSFRRADDLLSALDSQFNSRKLLEESPKRKKAAGGKEQKGNTPQPKSKE
FT                 QQSIPADQQLISANPQMLLRSAAKKDSVSEQSVTECMQPGTSKNSDLSVVV
FT                 SQLVDPPISQNVASPPQGTTESGQPAQVGFAETMSAPPKSLSVVPLKKQIF
FT                 VSRLSPDQTSSDVLSYIQDKTKADCNSVKVEKFKFSYARDISSFKITVPNE
FT                 LFEAICSGDFWPDNMVVKEFEAKIKKKGPVGVKLPSRGQTSVPISKN"
FT   CDS           1378..4239
FT                 /product="CR1-2_DRh_2p"
FT                 /translation="SRPNQCTNFKKLTSNLLLSYQNARGLRSKLTKLYSDS
FT                 LSFASHIIVFTETWLKPEIFSSEVFPGKYTIYRYDRPSRRGGGVLIGVDSN
FT                 LPSEELFFDEFNTIEFICVKLSLPGNFIYITCSYIPPLSELPDYLNHLSVI
FT                 KSVANKLSDRDQLIVLGDFNIPGVTWSTEDGSNVLLPIAQHDFIDGLLDIS
FT                 LSQVNHVRNSLGRLLDLCFVSNPEGVFLSRVAPLTQPEDPYHPTIELSFDT
FT                 GRVIEEKSEKSKRIHCFRKADFLRLNNFISGFNWSDLYLCNNMSDAVNVFY
FT                 TAINSFFNSCVPWYYPSTSNKSPWFSKELTHLRNVKSRLFRKYKNTGSQSV
FT                 FTRYLSARSRFTVLNAQCYNSYLNRCKVQFSQDPKQFYNFVNTKRKSNSFP
FT                 SSLSFENMTATTDQAIADLFAQFFQTTYSTLDYSSQPYSYTMSKSNLIFCP
FT                 TLTESSLLLDLLRIKPVYSPGPDGIPGCVLRYCAKALCKPLHKLFTLSLET
FT                 SQFPNIWKESFVIPLFKKGNKLEASNYRGISKLSAIPKLFEKIITPHLQHL
FT                 CRSIISPCQHGFIKRRSTITNLLELTTFVIKGFNSSFQTDVIYTDFSKAFD
FT                 SVNHLLLIQKLDLLGFPVDLLKWISSYLNGRSQRVLFKNSISEILRVTSGV
FT                 PQGSHLGPLLFTLFINDLPSIISHSRVLMYADDVKLCLQYKDISCHLDLQS
FT                 DLDNFQNWCRDNLLNLNGSKCKLMTFYRANPIYATYTLSGSSLDRITLVND
FT                 LGVLLDPKLKFSNHISSMVNKARGVLGFIKRWSKEFDDPYLTKTLFISLVR
FT                 PILEYGSPVWSPQYGIHIGRIESVQKNFLLFALRRLNWDANLILPSYSSRL
FT                 LLINLPSLANRRTMLGTIFIYNLIHGDIDCPDLLSRLNFSVPSRLTRNYIP
FT                 LILNHCRSNYALHEPFRVLCSDYNRLFPVISNLDSLPLLKRLILASLAQD"
XX
SQ   Sequence 4397 BP; 1210 A; 927 C; 800 G; 1460 T; 0 other;
     gactttcaaa gtgaacggtc gtgttttttt tctgcgcttc gaattttgta ttttgttttc        60
     gtttattccc atcggtgggt tttatcaaaa caattttaat tttcttccgg tttatttaaa       120
     cataaattta aactccgttc gcttcgcgag tgcactttgt atttaatact aataaattgt       180
     tttagttttt cgtaattctt atctgtgttt tcttttctta tatccccgcc gtttctcttt       240
     tgtgcatgca ctttaactta tttacgctcc cgctctcttg ctctctttgc tttgaaagtt       300
     ctaagcgtgc agtttctgcg ctcttgcggt acttataact gctcgcttat aaatttcaat       360
     tcgctttctt ggtacagtgg ttccaataaa taaaatgaat aataaaaatt tagtctgctt       420
     ctgcaaaaaa tgcagcctcg taatcagggc tgaccagtct aatatgactt gctggctgtg       480
     tgaaaatatg gtgcacacca agtgcgccgg ttttactggc cggacaagtg atgacctttc       540
     aaaggggccc aatttgcagt tttgttgtga cgcttgtgtc gaggttgcga acgagatgaa       600
     atcgttcatg cgccaaacta aaggcggcct gatggggctg attagctgtt tcggagttgc       660
     tagagatagt tttcgccgag ctgatgatct cctctctgcg ctggactcgc agtttaatag       720
     tcgtaagcta ttagaagagt cccctaagcg caaaaaggcc gctggtggta aggagcaaaa       780
     ggggaacacc ccgcaaccga aatcaaaaga acaacagagc attccggcgg atcagcagct       840
     gatttcagca aaccctcaaa tgttgctaag atcagcagct aaaaaagatt cggtatccga       900
     acaatccgtt acagaatgca tgcaaccagg gacttctaag aattccgatt tgtccgtagt       960
     ggtttcacaa ttagtggatc cacctatctc tcagaatgta gcatcaccac cacaagggac      1020
     tactgagtcc ggacaaccgg ctcaagttgg ttttgcagaa acaatgtctg ctccaccaaa      1080
     atccctttca gtggttccac taaagaaaca aattttcgtt tctcggcttt cccctgatca      1140
     aacatcttct gatgtattgt cttatataca agacaaaact aaagccgatt gtaatagtgt      1200
     aaaggtggaa aagtttaagt tttcttatgc tagagacatt tcatctttca agataactgt      1260
     ccctaacgag ctttttgaag ccatatgctc gggcgacttt tggccggata atatggttgt      1320
     aaaagagttc gaggctaaga taaagaagaa ggggcccgtg ggagtaaaac ttcctagtcg      1380
     aggccaaacc agtgtaccaa tttcaaaaaa ctaacttcta acctccttct ttcctatcag      1440
     aatgcaagag gtttgcgtag caaactcact aaattgtatt ccgatagcct ttcctttgca      1500
     tctcatatta ttgtgttcac agaaacctgg ttaaagccgg agatctttag ctccgaagtt      1560
     tttccaggta agtacacaat atataggtat gaccgtccct ctagacgggg aggtggagtc      1620
     ttaattggag ttgattcaaa cctcccgtct gaggagttat tttttgatga attcaatacc      1680
     attgaattta tttgtgtaaa gttatcgctt cctggtaact ttatatacat aacttgctca      1740
     tatattccgc cgttgtctga acttcctgat tatttaaatc acctatccgt tattaagtcc      1800
     gttgcaaata agctttccga tagggatcag ttgatagttc taggtgattt taatatacct      1860
     ggagttactt ggtccactga ggatggatcg aatgtcttac tacctatagc acagcatgat      1920
     tttattgacg gcctgcttga catatctcta tctcaagtaa accatgttcg aaattcatta      1980
     ggtcgcctac ttgatttgtg ttttgtatca aatcctgaag gtgtgtttct gtccagagta      2040
     gcaccactca cgcaacctga agatccatat cacccaacaa tcgaactttc atttgatacg      2100
     ggtagagtta tagaagaaaa atcagaaaaa tccaaacgaa tacattgttt tcgcaaggca      2160
     gactttctga ggctaaataa ttttatttct ggctttaatt ggtctgatct ttacttatgc      2220
     aataatatgt ccgatgcagt taatgttttt tacactgcaa taaactcatt ttttaattcc      2280
     tgtgttccgt ggtactatcc gtcaacttcc aataaatcac cttggtttag caaagagttg      2340
     acacacttaa gaaatgtaaa gtccagactt tttaggaaat ataaaaatac cggttctcaa      2400
     tctgttttta ctagatattt aagtgctcgg tcaagattta ccgtgcttaa tgctcagtgt      2460
     tataatagtt acttaaaccg ttgtaaggtc cagttctctc aggacccgaa acagttttat      2520
     aatttcgtta acaccaagcg taaatctaat tcttttcctt cctcgctgtc gttcgaaaac      2580
     atgacggcaa ccacagatca ggcaatagcc gatttatttg cccaattttt tcaaacgact      2640
     tactctactt tagattattc atcacagcct tattcttaca ccatgtccaa gtcaaacctc      2700
     atattctgtc ccactttaac agaaagctct cttcttttgg atcttcttcg tattaagcct      2760
     gtttattcgc cagggcccga tggtattcct gggtgcgtgc ttaggtattg cgctaaggcc      2820
     ctgtgcaaac ctcttcacaa gttgtttacc ttatctctag aaacctccca attcccaaat      2880
     atttggaagg aatcatttgt tattcctctt ttcaaaaaag gtaacaagtt agaagccagt      2940
     aactacagag gtatttctaa gttgtcagct attcctaagc tttttgaaaa aattattact      3000
     cctcatttgc agcacctttg cagatcaatc atttctccgt gtcaacacgg atttattaaa      3060
     cgtagatcca caatcacaaa ccttctagag ctcactacat ttgtgataaa aggcttcaat      3120
     agtagttttc aaacagacgt catttacact gactttagta aagcatttga ctctgtaaat      3180
     cacttacttc ttattcaaaa acttgacctt ttaggttttc cagttgatct gcttaaatgg      3240
     atttcaagtt atctgaatgg caggtcacaa agggtccttt ttaaaaattc aatttctgaa      3300
     attctccgtg ttacctccgg tgtcccacaa gggagccatc tgggtccgtt actttttaca      3360
     ttatttatta acgatcttcc ctcaattata agtcattctc gcgtacttat gtacgcagat      3420
     gatgttaagt tgtgcctgca gtataaggac atttcctgcc atttagactt gcaatccgat      3480
     ctagataatt ttcaaaactg gtgccgagat aatttactaa atttaaacgg ttccaagtgc      3540
     aagctgatga ctttttatcg ggccaatccg atatacgcga cttacacgtt aagtggcagc      3600
     tctttggata gaataactct tgtaaacgat cttggcgttc tcttggaccc taaactaaaa      3660
     ttttctaatc acatttcgtc catggttaat aaagccagag gagtgcttgg atttattaaa      3720
     aggtggtcaa aagaattcga tgatccttat ttgactaaaa ctttatttat ttcgctagtc      3780
     cgtccgattc tggagtatgg gtctcccgtc tggagtccac aatacggaat acatattggt      3840
     cgtattgaat ctgtacaaaa aaacttcctt ctttttgctt tacggcgcct aaactgggat      3900
     gcaaatctta tcttaccttc ttattctagt agacttcttt tgattaattt accatcccta      3960
     gccaaccgta gaacgatgct tggtactatc tttatttata accttataca tggtgatatt      4020
     gactgccccg acttgttaag tcggctaaac ttttctgtgc caagtagatt aactagaaat      4080
     tatattcccc taattttaaa tcattgtaga tctaactatg ccttgcatga gcctttcaga      4140
     gtattatgtt ctgactataa tagacttttt cctgtaatat caaatcttga ctctctgccg      4200
     ctcctaaaac gattaatact tgcttcattg gcacaagatt gatctaacta ttactttttt      4260
     ccccggacct ttacctttat tttcctatct cgcgtctatc ttatcgcgaa tcgtgccgta      4320
     cgatacacgg ctgcgcccct cggtcggttg ggcgggtaag tgggccgtgg gactccgcgc      4380
     gaaaaaaaaa aaaaaaa                                                     4397
//
ID   CR1-2_DSer  repbase;    DNA;    INV; 4433 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4433
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2058-2058 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           446..1444
FT                 /product="CR1-2_DSer_1p"
FT                 /note="PHD."
FT                 /translation="MSGNIVCLVKTCKKAVVAGDLTIGCWLCDNVMHAKCI
FT                 GVAARTVDDVKKNIGLRFCCEACRDVEREMMSFMRQTKSGFKGILTSFRKT
FT                 LDMFLALDTQFNSLTLLNESPRRKKTATGGQHVDGPQLPATGSQQQPPSAQ
FT                 PSTSALIPRVLRSSARKDSVSECAAGVPVPPLISVLSPGGSQILTPQSPVH
FT                 INISSQGVRPGIPADNGTADNQSALPKALIAVPPTRHIFVSRLSPDQTSED
FT                 VLAFIQGKTRAEKIKIKVEKFKFSYARDISSFKINVPNELFNTICSPNFWP
FT                 EYIVVKEFEAKKKKKRPVGITLPRPDHTTAPSTSSNPDPKN"
FT   CDS           1399..4302
FT                 /product="CR1-2_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SYHCAFYVFQSRSKKLTHSLGISYQNARGLRSKLPNL
FT                 YSDSLSFVSQVIVLTETWLKPEILSSEVFPAVFTVYRLDRPVRRGGGVLIA
FT                 VDSSLTSELLTFEECNDVEFLCVKLSIKGSSIFITCSYIPPLSELPIYWNH
FT                 LSAIQMVSSRLLDRDQLVVLGDFNIPGAIWCSNNSTNTLHTPTQHDFIAGL
FT                 FDISLSQVNHVRNSLQRLLDLCFVSDPARVSLARVAPLTQPEDPYHPTFDV
FT                 TLDIGCDVQNISDRPANKVLCFRKTDFERLNNFINEFNWSDLYMCTDMAVA
FT                 VDIFYSAMNSFFTECVPLYYPPSSNKPPWFTKELSRLKNKKSRLYAKFKIT
FT                 GSQSALSFYLSARSNFTVLNAQCYKNYLTRCRAQFSQDPKQFYNFVNTKRK
FT                 PKTNPSSLSFENTTANNDQAIADLFSQFFQTTYSSSSYLHQTYSYDIPKSN
FT                 LIFCPSLNESSLLLDLHRVKPVYSPGPDGIPGCVLRYCADALCYPLLKLFT
FT                 LSLETSHFPIIWKESFIIPLHKKGSKLDASNYRGISKLSAIPKLFENIITP
FT                 HLQHLCRSVISPCQHGFIKRRSTTTNLLELSSYIIKGFHNNCQTDVIYTDF
FT                 SKAFDSVNHSLLVRKLDSMGFPSDLLNWISSYLNGRTQKVLFKNNLSNVLR
FT                 VTSGVPQGSHLGPLLFTLFINDLPKVLTNSRVLMYADDVKLCVQYNDVACQ
FT                 SDLQTDLNNFQTWCRVNLLNLNDSKCKLMTFSRVVPKLATYTLNCCSLERI
FT                 NSVDDLGVRLDPKLDFIDHISSMVNRARGVLGFIKRWSKEFNDPYVTKSLY
FT                 TSLVRPILEYGCCVWSPQYGVHSKRIESVQKNFLLFALRGLNWDANQRLPS
FT                 YSSRLLLINLPSLANRRTMLGITFIFNLIHGDVESADLLSQLNFHVPCRTT
FT                 RSYIPLVLRHCRTSFELHEPFRVLCANYNDLYTLISNVDTLPKLKSLILTH
FT                 LVSMQANNLAARR"
XX
SQ   Sequence 4433 BP; 1167 A; 1040 C; 835 G; 1391 T; 0 other;
     ttcatctttc caagtgaacg gacgtgtttt tttcttgcgc tctcgttttg tattaaagat        60
     tgattctaac caccggggtt aacttaaatt ttctaatttg tgtttataac ttcccgttca       120
     cttcgcgtgt gcatgcagct atactatttt gtgtacataa ttggctttat tttccaattt       180
     agttgtgctg ctagtgttag cttttgcata ttttgcattc ctttttgtgc cttcttcgtc       240
     tagcttttgt ttgcgccgtc gcaacagcta aacgttttat ctatctatct cccacgctct       300
     ctcactctct cgctttagct gtgccgctgc acttcttatc taatctaatc tcattcgctc       360
     tcccgctctc ccgctctctc gctctcgctg ttcatatctc tgttgttatt ttttccaagt       420
     acaagtacag tggtaagtcc taataatgtc cggaaatatt gtctgtttag tgaaaacctg       480
     caaaaaggca gttgttgcag gtgaccttac aatcggctgc tggctgtgcg acaacgtcat       540
     gcacgccaag tgtattggag ttgcagctcg gacggtggac gatgtaaaaa aaaacatcgg       600
     cctgcgtttc tgttgtgagg cctgtcgcga tgtagaaagg gagatgatgt ctttcatgcg       660
     gcaaaccaaa agcggtttta agggcatttt aacgagtttt cgtaaaactc ttgatatgtt       720
     cttggcgctg gacacccaat ttaatagcct tacgctatta aatgagtctc ctaggcgcaa       780
     aaaaactgct actggtgggc agcatgtaga cggaccccaa ctacctgcaa cgggctctca       840
     gcagcagcct ccctcggcac agccctcgac ctcagcatta attccaagag tgctgagatc       900
     gagcgctaga aaagattcgg tatccgaatg tgcagcggga gtgcccgtac cgccgttgat       960
     ttctgttcta tcgcctgggg ggtcgcaaat attgacccct caaagtcccg ttcacataaa      1020
     tatatcttcc cagggtgtta ggcccggaat accggccgac aatggcacgg cggataacca      1080
     atctgccttg ccaaaagccc ttatagctgt tccaccaacg agacatattt ttgtctcgcg      1140
     gctctcccct gaccaaacat cggaagatgt tctcgccttt atacaaggca aaaccagagc      1200
     cgaaaaaatt aagataaagg tggaaaaatt caaattttct tacgcaaggg acatttcatc      1260
     tttcaaaata aatgtcccta acgagctctt caatactatt tgctctccca acttctggcc      1320
     agagtacatc gttgttaagg agttcgaggc gaagaaaaag aaaaagcggc ctgtaggaat      1380
     aactctaccc aggcctgatc ataccactgc gccttctacg tcttccaatc ccgatccaaa      1440
     aaactaaccc actccctagg tatttcctat cagaatgcaa gaggcttacg tagtaagctt      1500
     cctaacttgt attctgatag cctttcgttt gtatctcagg ttattgtgct cacagaaacc      1560
     tggttaaagc cggagattct gagctccgaa gtttttccag ctgtgttcac ggtatatcgg      1620
     ctagatcgcc ctgtcagacg cgggggtgga gttctaatag cggtggactc ctcactcacg      1680
     tcagaattat taaccttcga ggaatgtaac gatgttgaat tcctctgtgt gaagctatct      1740
     atcaaaggta gctccatttt tattacctgt tcctacatac ctccactgtc ggaacttcct      1800
     atttattgga atcacctttc cgctattcag atggtttcca gtagactttt ggatagagac      1860
     cagttggtag ttctaggaga ttttaatatc cctggtgcta tttggtgctc aaataattcc      1920
     accaatactc tccatacacc tacacaacat gactttatcg ctggcttgtt tgacatttcg      1980
     ctgtctcaag tcaaccatgt tcgaaattcc ttacagcgct tgctcgatct ttgcttcgtc      2040
     tctgatcctg cgagagtcag tttagcaagg gtggcgcctc tgacgcagcc cgaagatcct      2100
     tatcatccaa ctttcgatgt gactcttgat attgggtgtg acgtacagaa tatttctgat      2160
     cgtccagcca ataaagtcct atgttttcgc aaaacggact ttgaacggct gaataatttt      2220
     ataaacgagt tcaattggtc tgatctatac atgtgcactg acatggcagt tgccgtggat      2280
     attttttaca gtgccatgaa ttcatttttt actgaatgtg ttccgttata ttatccgcca      2340
     agctcgaata aaccgccgtg gtttactaaa gagttgagcc gacttaaaaa taaaaaatct      2400
     agactgtatg ctaaattcaa aatcaccggt tctcaatctg ccctttcatt ttatttatca      2460
     gctcggtcaa actttaccgt gctgaacgcg cagtgttata aaaactattt aactcgttgt      2520
     agggcccagt tctcacagga cccaaaacag ttttataatt tcgttaacac taaacgtaaa      2580
     cctaaaacaa atccttcctc gctttcattt gaaaatacta ccgcaaataa tgatcaggca      2640
     atagccgatc tattttcgca gttttttcaa acaacctatt ctagctcttc gtatctacac      2700
     cagacctatt cctacgacat acccaaatca aacttaattt tctgtcccag cctaaacgaa      2760
     agctctctcc ttttagatct tcatcgtgtc aagccagttt attcgccagg tcccgacgga      2820
     attccaggct gtgtgctcag gtattgcgcc gacgccctgt gctatcccct tctgaaattg      2880
     tttaccttgt ccttagaaac ctcccacttt cccattattt ggaaggaatc gtttattatt      2940
     cctctccaca aaaaaggtag caaattggat gccagcaatt atagaggaat ctctaagttg      3000
     tcggccatcc caaaattatt tgaaaatatt atcacccctc atttacagca cctttgtaga      3060
     tcggttattt ctccatgtca acatggtttt attaagcgaa gatcaacaac aacaaatctt      3120
     ttggagctct cttcctatat tataaagggc ttccataata attgtcagac agatgtaatc      3180
     tatactgatt tcagtaaagc ttttgactct gttaaccatt ctctcctcgt tagaaaactc      3240
     gattcaatgg gttttccaag tgatcttctt aattggatct caagttattt gaatggcagg      3300
     acgcaaaagg tcctctttaa gaataattta tccaatgttc taagggttac atctggcgtc      3360
     ccgcaaggaa gccatttggg acccttattg tttacattat ttataaatga cctgcccaaa      3420
     gtcttgacta actccagagt acttatgtac gcggatgacg tcaagctttg cgtgcaatac      3480
     aatgacgttg cctgccagtc ggatttacaa acagatctta ataattttca aacttggtgc      3540
     cgtgtaaact tattaaactt aaatgactcg aaatgcaagc taatgacatt ctcacgtgtc      3600
     gttcctaagc ttgctactta cacgctgaac tgctgctctt tggaaagaat taattctgtt      3660
     gacgatttgg gcgtccgctt ggaccctaaa cttgacttta ttgatcatat ttcgtctatg      3720
     gtgaatagag ccaggggtgt gcttggattt attaaacggt ggtcgaagga attcaatgac      3780
     ccctatgtta ctaaatcctt atatacttcc ttagttcgtc ctatcctaga atatggatgc      3840
     tgcgtttgga gccctcagta cggcgtccat agtaaacgca ttgagtcggt tcaaaagaac      3900
     tttttacttt tcgctctacg cggtttaaat tgggatgcaa accaaagatt accttcctac      3960
     tctagtagac tcctattaat aaacttgccg tccttagcca atcgtagaac gatgctaggg      4020
     ataaccttta tttttaacct tatacatggt gatgtggaaa gtgctgactt gttgagtcag      4080
     cttaatttcc atgtaccatg tagaactact agatcctata tcccattagt gttgcgccac      4140
     tgtagaacct cctttgaact gcatgaacct tttagagtgc tatgtgcaaa ttataatgat      4200
     ttgtacacac taatctctaa cgtagatacc cttcctaaat taaaatcttt aatactaaca      4260
     cacttagtaa gcatgcaagc taacaatctg gcagcacgcc ggtagttcaa ttttcctcgt      4320
     attctgtcct atattttcca tcgcgcctac taacacctaa ccctaacagg cacgtgcctg      4380
     gtgtcatacg ggccacttga atgtactgaa cttagtgcat caacgtccaa gaa             4433
//
ID   CR1-2_DSuz  repbase;    DNA;    INV; 4507 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4507
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 600-600 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~91% identical to
CC   that of CR1-5_DRh from D. rhopaloa.
XX
FH   Key           Location/Qualifiers
FT   CDS           608..1501
FT                 /product="CR1-2_DSuz_1p"
FT                 /translation="MALVCSKKNCTLSSSTKDPFIFCWLCESIMHVKCAGF
FT                 TGRVKDFIDQNSGLMWSCGSCKEMVVEMSGFMKQTRDSLLNLSGAFKQLNE
FT                 GFNSVCAQFNNKKLLTESPKRKKTSSAAVNTVTVSTPNPNLVAAAVSVDTV
FT                 VSEPTAPMDTAVLGEVTASRSRVVKKPSVPTTVPTVPIGTEVTVSGSQLSE
FT                 VQSAAGGRKKLSVVPQRKQLFVSRFTPDTTSEDVLEFIREKFPSENISVEQ
FT                 FRFSYARSISSFKIFAPPDVFKVLLSESFWLNDDLVIKEFVPNKPRTNNRP
FT                 STAPKN"
FT   CDS           1477..4329
FT                 /product="CR1-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QTFHGAKKLKSLFLAYQNVRGLNMKLPKLYADSSAFT
FT                 ADILAFTETWLKPEISDNEVLSNNFNAYRTDRSSRRGGGVLIAVSTSLTSE
FT                 RIHSDTPNEIEFVSVKVSLQSFSIFVTCSYIPPGSDLIIYEHHLSAIKSVL
FT                 SLLSNSDLLIVLGDFNLPGISWSPPTDSLVAIPLSAHDFVDGLLELSLQQV
FT                 SFIRNSLNRQLDLVFVSDPSEVTVSRIDALVVPEDRYHPTMELTICLPCVD
FT                 TLSPLVSQTKVRCFRKCNFKKLNDMISQYNWTELYNCMDIESATEHFYIVL
FT                 NTFFNECVPDRFPSKTNRPPWFTNALQRLKNLKTNTYKKYKKSGKPSDFSK
FT                 YVVARSDFNVLNSHCYSMYLSRCKFEFSNDPKQFYNFVNAKRKSSALPSSV
FT                 RFNSMEASTDSEIADLFAEFFQTTYSSAAWSNSNYPNPLNKANCIFTPEIT
FT                 EISLVRDLEKTTPTYSPGPDGLPGCVLKFCASTICKPILKLFNLSISSSVF
FT                 PTIWKDSFIIPLHKKGAKADAQNYRGISKLSAIPKAFERIITSHLQHLCSS
FT                 LISPCQHGFVKRRSTTTNLLELSSIVINGFKNKMQTDVIYTDFSKAFDSVN
FT                 HSLLLFKLNQLGFPCNLLTWISSYLNGRTQRVIFKNAASKLIYVTSGVPQG
FT                 SHLGPLLFTLFINDLPSIITHSRVLMYADDVKLCLSHNDIASGFNLQSDID
FT                 CFQGWCEYNLLNLNCLKCNVMTFHRGTPTFVSYSLQNTPLDRIYSVNDLGV
FT                 LLDPKLKFDCHIMSTVSKAMSVLGFIKRWSKEFDDPYTTKLLFTSLVRPIL
FT                 EYCSSVWSPQYQVHIDRIESVQKKFLLFALRSLNWDQNIRLPSYQSRLLLL
FT                 NLPTLANRRTMLGTIFMQNLIRGDIDSVELVNRLTFNVPVRLTRNYYPLNL
FT                 PRCTSNFCLHEPFRVLCNNYNNLYHLICTSTSIPVLKTNILTHLLHS"
XX
SQ   Sequence 4507 BP; 1198 A; 911 C; 799 G; 1599 T; 0 other;
     cgatttagcg tcgcttgtga acggttgtgt ttactcttgt gctctgaatt ttttgtctat        60
     tctgtgattt tttgcgagtg ttttgtgttt gtttattaac aaagcttagt ctaaccgctg       120
     ggttagtgtg tttagtgttt tttactagat ctcccagtga ttatagttat tttaacattt       180
     atattagatt tgtttaatct actagctttg ttagtgtaat tcttatactc actaaacttg       240
     ctaaaactct tcgattctca ctctctctcc cgctctatat tacaactgta acttaaactc       300
     tctctgaacc tgccaaattt ctggtagact tttggtgtgc tattctcttg tctctctctc       360
     tctctctctc tcttgcttgc tttacattgt aactgttcct gcgtaaagtt gtcagtgtcc       420
     cacaagcaac gctcaatcga tagaagattt tttctctcgt gctctcttac gtttaaatta       480
     ttacgcgatc tcgcgctctt attttttttc gtgttttgtg cctttgtggt tttggaattt       540
     gatcccagtg ccaaatttac tcgaggtatt tttcatatat tattctattt tatttaatct       600
     ccttaaaatg gctcttgtct gctctaagaa aaattgtact ctttcgtctt caactaaaga       660
     cccttttatt ttctgctggc tctgcgagtc gataatgcac gttaaatgcg caggatttac       720
     tggtagagtc aaagacttta ttgatcagaa ttctggactc atgtggtcat gtggatcctg       780
     caaggaaatg gttgttgaga tgagcggctt tatgaagcag actcgagaca gccttttgaa       840
     tctctctggt gcttttaaac agctcaatga ggggttcaat tccgtttgtg cccaatttaa       900
     taataaaaaa ttactaactg agtcgcctaa acgtaaaaaa accagctcag cggcagttaa       960
     tacggtcacg gtatccaccc caaatccgaa cttggtggct gcagcagtct ctgttgacac      1020
     tgtggtaagt gaacctactg cgcctatgga tacagctgtt ttaggtgaag tcactgcttc      1080
     tcgaagtcgg gtggtaaaaa aaccttcagt gccgactacg gtgccgaccg tacctatagg      1140
     tacagaagtt accgtttctg gctctcagct tagtgaggtg caatctgctg ctgggggtcg      1200
     taagaaatta tcagttgttc cacaaagaaa acaattattt gtttcgagat tcactccaga      1260
     taccacatct gaggatgttt tggaatttat tcgtgaaaaa ttcccatccg agaatatttc      1320
     agtggaacaa tttagatttt catatgctcg tagtatatcg tcgtttaaaa tatttgctcc      1380
     gcctgatgtg tttaaggtac tactttctga aagcttttgg cttaatgatg atttagtaat      1440
     aaaagaattt gttcccaata aaccgagaac aaataacaga ccttccacgg cgccaaaaaa      1500
     ctaaaaagtt tatttttggc ctatcaaaat gttaggggac taaatatgaa gctacccaag      1560
     ctttatgctg actcctctgc atttactgct gatattttgg cttttacgga aacttggttg      1620
     aagccagaga tatctgacaa tgaagttctg tcaaacaatt ttaatgccta taggaccgat      1680
     cgctcctcac gtaggggagg cggtgtgctg attgccgtta gcactagcct aacttccgag      1740
     agaattcact ctgatactcc taatgaaatt gaatttgtta gtgtgaaagt ttccttgcaa      1800
     tcattctcaa tatttgttac atgctcctat attccacctg gctctgattt aataatttat      1860
     gagcaccacc tgtctgcgat aaaatctgtt ctatcccttc tttctaacag tgaccttttg      1920
     attgttttgg gtgactttaa tctccctggt atttcttggt ctcctcctac tgactcacta      1980
     gtcgctatac ctctatccgc ccatgatttt gttgatggtc ttctagaatt atcgttacag      2040
     caagtaagct ttatacggaa ttcattaaat agacaactag atcttgtgtt tgtttcagac      2100
     ccgtctgaag tcacggtatc tagaattgac gctcttgttg tacctgaaga ccgatatcat      2160
     ccaacaatgg aattgacaat ctgcctccca tgcgttgata ccctctctcc tttagtttct      2220
     caaactaaag tgagatgttt ccgaaaatgt aactttaaaa aacttaacga catgatttct      2280
     caatataatt ggacagaatt gtacaattgt atggatattg aaagcgccac tgaacacttc      2340
     tatatagtgt taaatacctt ttttaatgaa tgcgttcctg ataggtttcc ttcaaagaca      2400
     aacaggccac cttggtttac caatgcgctt caaagactta aaaaccttaa gacaaacact      2460
     tataaaaagt ataagaaatc gggtaagcca tctgattttt cgaaatatgt ggtggctcga      2520
     tcggatttta atgttcttaa tagtcattgc tattctatgt atttaagtcg atgtaaattt      2580
     gaattttcaa atgatccgaa gcagttttat aactttgtca atgccaagcg taagtcgtca      2640
     gcattgcctt catcggtacg ttttaactca atggaggcat cgacggattc tgaaattgct      2700
     gatttatttg ccgagttttt ccaaactact tatagttcgg ctgcttggtc aaattctaac      2760
     taccctaatc ccttaaataa ggcaaattgt atctttaccc ctgaaattac ggaaatttct      2820
     ctcgtaagag acttagaaaa aacaacgcca acttattctc ccggtcctga tggactcccc      2880
     gggtgtgtgc ttaagttttg tgcgtcaacc atatgtaaac cgattcttaa actttttaat      2940
     ttgtctattt catcgtcagt ttttcctact atctggaagg actcttttat cattccactt      3000
     cacaaaaagg gtgcgaaggc ggatgcccag aattacagag gtatttctaa attgtcggca      3060
     attcctaaag catttgaacg tattattact tctcatttgc aacatttatg ttcctcgcta      3120
     atatcaccgt gtcagcatgg ttttgttaag cgaagatcga ctaccaccaa ccttctggaa      3180
     ttgtcatcta ttgtaataaa tggatttaag aataaaatgc agactgacgt tatatacact      3240
     gattttagta aggcctttga ctctgtcaac cactctcttc tcttattcaa attaaatcag      3300
     cttgggtttc catgtaatct attaacttgg atttcaagtt atttgaatgg taggactcag      3360
     agggttatat tcaagaacgc tgcctcaaaa ctgatctatg tgacatctgg agtgcctcag      3420
     ggtagtcatt tgggcccttt gctgtttact ttgtttatta acgatcttcc ctctatcata      3480
     acacactctc gtgtactaat gtatgctgat gatgttaagc tttgtttatc acataatgat      3540
     atagcgtcgg gtttcaactt acagtcagat attgattgtt ttcagggatg gtgtgagtat      3600
     aaccttttaa atttgaactg ccttaaatgc aacgttatga cttttcatag aggtactcct      3660
     acttttgtta gttactctct tcaaaatacg ccactcgacc gtatatattc agttaatgac      3720
     ttaggcgttc ttctggaccc aaaacttaaa tttgactgcc acataatgtc cactgtcagc      3780
     aaggccatga gtgttcttgg gtttataaag cgttggtcaa aagaatttga tgacccttat      3840
     acaaccaaat tattatttac ctcccttgtc cgtcctattt tggaatattg ttcttcggtt      3900
     tggagtccac aataccaagt gcatattgac cgtattgagt cggtacaaaa aaaatttctt      3960
     ctttttgccc ttcgtagttt gaactgggat caaaacataa ggctaccttc ctatcagagt      4020
     agattactat tgcttaattt acctaccctt gcaaatcgta gaacaatgct tggtactatt      4080
     tttatgcaaa atcttataag aggtgatatt gattctgtag aacttgtaaa ccgcctaact      4140
     ttcaatgttc ctgttagact aacacgaaat tattatcccc taaatttgcc acgatgtaca      4200
     tctaattttt gtctgcacga gccctttcgc gttctatgta ataattataa caacctttat      4260
     catttaattt gcacttcaac ttctatcccg gtattaaaaa ctaatatttt aactcatttg      4320
     cttcattctt agatgcttct tttattttca tttgtgtccc gtctctattt gttttttgta      4380
     tcttcctcgc gaactcgtat tttttgccca aattgataaa agggccccgc gcgtaacaag      4440
     cacgtgcttg gtgtcgttgg gccacttgtt tgtactgctc gtagtgcatc aacgtccatc      4500
     atatata                                                                4507
//
ID   CR1-2_DT    repbase;    DNA;    INV; 4401 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4401
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1693-1693 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ~90% identical to CR1-4_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           421..1185
FT                 /product="CR1-2_DT_1p"
FT                 /translation="MSACCMKPCLLNGKITSRQPTIGCWLCNNIAHPKCAD
FT                 LGHSAGLVADRTKSNSGLDWTCPSCHHIKVNIMAFIRQTDLEYQSLLAGFK
FT                 DLFNRFEKAESNFKGRILAAASHNAVATSDHVPVAADSGPDTGASSCLQST
FT                 AHSSTASTAVSSGYVPTLESYRLATSNASTVVTDGCAADASPGLTPAAASF
FT                 GPPDPIAPADLHPVNFDQASTSHAAAVGSGIILTPANTNTSPSQSTLCGVA
FT                 QRVPMPLSGVAQKN"
FT   CDS           1385..4318
FT                 /product="CR1-2_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TCNCSRICTQAQSSGSRASDSFNQCFKKLNNSFSLHY
FT                 QNVRSLLGKLSKLHVNSVSFNANVIAFTETWLNSSVSDCEIFAGNYVIYRC
FT                 DRSVRLGGGVLIAVKSNLVSQRIPIIGTDSTLEFVAVRIKLHDYFVFVSCS
FT                 YIPPRSDISLYLRHLDQIQSIHTTLGDNDHLIVMGDFNLPALSWMPSTDSS
FT                 ALVPTTAHEFVHGLIDLSLGQLNSVINCSSKVLDLIFASEFANAYVTRISP
FT                 LSNPEDAYHPTLEVTLEASAPLLSCPEIEPATFRCFRRAKFAEMNRHLSQL
FT                 DWSFMDSNDNPSHIVEQFYSLLYLAFDKFVPSFPTGNASHKPPWFSRRLSF
FT                 LKNTMSRLFKKYKRTGLQVDHSRYLIARSNFLVHNSDCYNSYLNRCRIEFQ
FT                 DNPKQFFAFVNSKRKSQLFPSCLHLDTISASSDSDIANLFAQFFQSTYSSF
FT                 SYDNTSSYPYPLPHSNCFFTPLISEDDVLQNLHTIKTSFSSGPDLVPSCIL
FT                 KKCADALCKPLSKLFQISLLHSFFPEVWKESFIIPLHKKGSKSDIKNYRGI
FT                 AKLSAIPKFFEQLITAQLQHQCSSVMSPTQHGFMKRRSTTTNLLEFTSVIR
FT                 SAFKNDNQTDVIFTDFSKAFDSVNHQLLLKKLTLLGFPITLTKWISAYLTN
FT                 RTQRIAFKSTVSNLVHVTSGVPQGSHLGPLLFGIFINDLPQVVLSAHVMMY
FT                 ADDVKLCLPLSNPDSQALLQADLNNLNSWCIQNLLFLNNSKCNFMSFYRKK
FT                 LLLTTYSIGSNELERINSVTDLGVLFNHNLNFSNHIGIIVSKAKGVFAFVK
FT                 RWSKEFEDPYTTKHLYISLVRPILEYCSCVWSPQYTIYQDLIESVQKQFLL
FT                 FALRGLNWETHRHLPSYVDRLRLLNLPSLKDRRTCHGVMFLHKLITGLVNS
FT                 SYLLGQIRFSIPVRSTRHFRPIALDICKTNFELHDPFRVLCSQYNELYFLI
FT                 FSECSVNLIVTNILTYLSLPPST"
XX
SQ   Sequence 4401 BP; 1145 A; 1066 C; 771 G; 1419 T; 0 other;
     tcgtcgtcgt agtcggacgt gtactttatc gctcctccat ctgatcgaac tttacccgtg        60
     taaactacat cgattaatgc cgaatccgga catctgacaa tttttcggtg atctttatca       120
     tactgacaag ttttgatagc taaaagacag tgactttata cgtaattcga atgattacaa       180
     tataatcaga aaacgttttg tgtttttgct ttgttgttct actctattct cgagtttacc       240
     gcaaacttct acactggtgt tgttgttagt gcatttgctc tcttatcgtt tcggcgcgag       300
     catcacacgc gcggaaagct tatcactgac caaactgcaa gctgcgcttt ctacatctac       360
     atctaaatct acgttgtttt ctacacgtat ttatttgaca attttctcaa ttatttcgct       420
     atgtctgcct gctgcatgaa accttgcctt ttaaatggca aaatcacctc ccgccaaccc       480
     acaattggtt gctggctgtg taataacatt gctcacccta aatgtgccga ccttggacac       540
     agtgctggtc tagtcgcaga ccgtactaaa tccaattctg gcctggattg gacctgcccc       600
     agttgccatc atattaaagt caatattatg gctttcataa ggcaaactga tctggagtac       660
     cagtccttac tagctggatt taaggactta tttaataggt ttgaaaaggc tgaatccaac       720
     tttaaaggcc gaatcctggc agctgcttcc cacaatgctg tcgctacctc ggatcacgtt       780
     cccgttgctg ccgattctgg accggacacc ggagcatctt cttgtctgca atccacggct       840
     cattcatcta ctgcttctac tgctgtcagc tctggttatg ttccaacact ggaatcctac       900
     cgcttggcta ccagtaatgc ctctactgtt gttactgacg gctgcgcggc agacgcctcc       960
     cctggactta cacctgccgc ggcctccttt ggaccgcccg atcccatcgc acctgctgat      1020
     ctacatcccg tcaactttga ccaggcatct acgtcgcatg ctgctgcagt tggctctggc      1080
     ataattttga cgcctgctaa tacgaacacg agcccatcac agtcaacctt atgtggagta      1140
     gcgcaaaggg ttcccatgcc cttatcgggc gttgcacaaa aaaactaatt tttgtctccc      1200
     gccttaatcc tggcgcttct gaagatgacg tcaaaaacta cctgagcagc aaactgaatg      1260
     tttctcgatc cgtacttacc gtcttgaagt tcaagtttaa gcagagacgt gagatatctt      1320
     cgtttaaaat tggacttcct gaggaacatc ttgataaggt tctagatgtt tctatatggc      1380
     ctgaacatgt aattgttcac gaatatgtac acaagcacaa tcctcgggtt cacgggcctc      1440
     agattccttc aaccaatgct tcaaaaaact aaataattct ttttctctac actaccagaa      1500
     cgttcgcagt ttattgggca aacttagtaa actgcacgtg aacagtgtct cctttaatgc      1560
     caatgtgatt gcttttaccg aaacgtggct taattcttct gtgtctgact gcgaaatctt      1620
     tgctggtaat tatgttatct atagatgtga ccgctcagtg cgtcttggcg gtggtgttct      1680
     cattgccgtc aagtccaatc ttgtctctca acgtattccg ataattggta cggatagtac      1740
     attagagttt gtcgctgttc ggattaagct tcatgattat tttgttttcg tatcatgctc      1800
     atacattcct ccccggtctg atattagcct ctacctccga cacttggatc aaatacagag      1860
     tattcatact acccttggcg ataacgatca tcttattgtt atgggtgact ttaatctccc      1920
     cgccctttct tggatgccct caactgattc aagtgctctt gtgcctacca cagcgcatga      1980
     gtttgtacac ggtcttattg atctttcatt aggtcaactg aactcagtca ttaactgctc      2040
     tagcaaagtt ttagacctta tttttgcctc ggagttcgca aatgcatatg taactcgaat      2100
     tagccctctc tccaatcctg aagatgcgta tcatcccaca cttgaggtta ctttagaagc      2160
     atcagctcct ttactgtcat gtcccgaaat cgaaccagca acttttcgct gttttcgaag      2220
     agctaaattt gctgaaatga ataggcattt atcccaactc gattggtctt ttatggattc      2280
     aaatgataat ccctcacata ttgtagaaca gttttatagc ttactatatt tagccttcga      2340
     taagttcgtt ccttcatttc ccactggaaa cgcgtctcat aagcctccgt ggttctctcg      2400
     tcgactctct ttccttaaaa acaccatgtc tagacttttt aagaaatata agagaactgg      2460
     gctgcaagtt gaccattcta ggtatctaat tgctcgttcc aattttttag tccacaattc      2520
     cgattgttac aacagttacc taaaccgttg cagaatcgaa ttccaagaca atcccaagca      2580
     gttcttcgca tttgttaatt cgaaacgaaa atcgcaacta tttccatcat gccttcatct      2640
     tgatacaata tccgcctcta gcgactccga tattgcgaac ttattcgcac aattcttcca      2700
     gtccacgtac tcttctttta gttacgataa cacctcttcc tacccatacc ctcttcctca      2760
     ttccaactgc tttttcactc ccctaattag tgaggacgat gttttacaaa atttgcacac      2820
     aatcaagacg tctttctctt ctggccctga tcttgtaccg agctgtatct taaaaaaatg      2880
     tgctgatgcc ttgtgcaaac cgctatctaa actgtttcaa atatccctcc ttcattcatt      2940
     tttccctgaa gtttggaagg aatcttttat cattccactt cataaaaagg gaagcaagtc      3000
     ggacattaaa aactaccgtg gtattgcaaa actaagcgca attcccaagt ttttcgaaca      3060
     gcttattacc gctcagctac agcaccaatg cagctcagta atgtccccaa ctcagcatgg      3120
     ctttatgaaa cgaagatcaa cgactacaaa tcttcttgag tttacttcag tcatcagaag      3180
     cgcttttaaa aatgataatc aaaccgatgt tatttttacg gacttcagta aagccttcga      3240
     ttccgtgaac catcagttat tattgaaaaa attaacacta ttaggattcc cgatcacgtt      3300
     gactaagtgg atctcagcct acctgacgaa ccgaactcaa agaattgctt ttaaaagcac      3360
     agtctcaaac cttgttcacg tgacctctgg tgttccgcaa gggagccacc ttggaccctt      3420
     actgtttgga attttcataa atgacttgcc ccaagttgtt ctctctgctc atgttatgat      3480
     gtatgctgac gacgtaaaac tctgtttgcc gttatcgaat cccgattccc aggcactttt      3540
     gcaagctgat ctgaacaatc tgaattcatg gtgcatccaa aatttgttgt ttttgaacaa      3600
     ttctaaatgt aactttatgt ccttttatcg gaagaagctt ctcctaacta catattctat      3660
     tgggtcgaat gaacttgaac gcataaattc cgttacagac cttggagtgt tattcaacca      3720
     caacttaaat ttctctaatc acattggtat catagttagt aaagcaaaag gcgtttttgc      3780
     ctttgttaag cgttggtcga aggaatttga ggacccctac accacaaaac atttatacat      3840
     ttccttggtt cgtccaattc ttgaatactg ctcgtgtgtt tggtcacccc aatataccat      3900
     ttatcaggac cttatcgagt cggtacagaa acagttcctt ttgtttgctc tacgtggttt      3960
     aaactgggaa acacatcgac acctgccatc gtacgtggat agactgcgtc tacttaacct      4020
     gccctccctc aaggatcgtc gaacgtgcca tggtgttatg ttcctgcaca aattaattac      4080
     tggacttgta aattcaagct accttcttgg tcaaattcgt ttctccattc ctgtaaggtc      4140
     tactcggcac tttcgaccaa ttgccctcga tatttgtaaa actaactttg agttacatga      4200
     tccatttcgc gttttatgtt cgcaatataa tgaactgtat tttttgatat tctcggaatg      4260
     ctctgttaat ttaattgtaa caaacatcct aacttacctg tccctgcccc cttccacttg      4320
     atgtgagtag ggtactatgt ttatgttggc agatatttgc taactttaaa taaataaata      4380
     aataaataaa taaataaata a                                                4401
//
ID   CR1-2_DWi   repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4552
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1956-1956 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           582..1472
FT                 /product="CR1-2_DWi_1p"
FT                 /translation="MACCLPTCKHSDRFDDQYRAISCWLCDNLIHLKCAGL
FT                 NGRDYDKFSGLSVSKPELGLMRWTCPSCASQQLDFSRMYRDIRLKFLSLNK
FT                 LAKQLSNECDSSVHLLSQFKFVPPSEKSPKKCTLELPRKQSPALSITSSPI
FT                 LLSPTPSSCPSLCSSFQIEVPITSPGVPHSIPHGNSDQSQDHASSQSLADP
FT                 NAPPPPLTVVPHRKQLFISRLAPDTSESSVAAYISNICPAKVLIQKFKFSR
FT                 PREISSFKITVPNEYFSAMVDTNFWPEGLVVHEFAPNKRSRPLPVHLPNLS
FT                 SASKN"
FT   CDS           1451..4312
FT                 /product="CR1-2_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FIFCFKKLITSSLCIHYQNVRGLLTKLSNLFCDSQTF
FT                 SADILAFSETWLNSSVLDNEILSNNFISYRLDRVGRRGGGVLIAVNSNLCS
FT                 SVVPIDLPLGVEFICVEITCSNFSLYISCSYIPPASDITTYMHHADALQTI
FT                 FNRLKDRDFLIVLGDFNLPNISWLVDDNLSFLIPSSQHVFLDSLLECPLYQ
FT                 LNSFLNSSKRILDLVFVSDPTVSAVSRTQPLVKPEDPYHPTIELTISYNSV
FT                 TNSFNNIANSRRRCFRKTNFNLLNSLIFSFDWSFLFECCDIDRAVKFFYSA
FT                 LNSLIDKCVPYVNVSTVSSAPVWFTRRLSNLRNIKSRYFKRFKKTGSRLDY
FT                 ANYCIAKSQFCLLNTQCYNNYIVRCKVEFYKNPKRFYNFVNSKRRSNVLPS
FT                 TFRLNDQTANNDSDIADLFAKFFQSTYSTTVSEPTPYPFSIPHLNCMFFPS
FT                 ITEDCIISSLSSMTSSFVPGPDNIPSCILKMCSNSLSKPLSRLFFISSETC
FT                 TFPDIWKESFIIPLFKKGSKSDVSNYRGIAKLSAIPKLFEKIITSSLQHLS
FT                 RSTISPCQHGFMKGRSSLTNLLELTTLVHHGFRKKCQTDVIYTDFSKAFDT
FT                 VDHSMLLAKLNIMGFSPKLLAWLKSYLIGRTQKVSFRSSISKTVRVTSGVP
FT                 QGSHLGPLLFTLFINDLPLALAHSRVLMFADDVKICYSYNDPSFQQYLQSD
FT                 LDAFCDWCHVNKLHLNASKCSFMTFSRLSPFLAHYSVKSVLLDCVPSFKDL
FT                 GVMFDPKLSFNVHISSIVNRACSLLGFIKRWAKEFDDPYVTKVLYTSLVRP
FT                 TLEYCSPVWNPQYDVHQRSIESVQKQFLKFALRGLNWDPSLRLPSYSSRLL
FT                 LINLPSLYNRRLVFGILFLHKLVNGEVISTNLLDTLYFCVPSRRTRNFFPI
FT                 HLSRCLTNYSLHEPFRVLCQSFNNLSHLISPHLSVTSLRAILFNHLQRNQ"
XX
SQ   Sequence 4552 BP; 1073 A; 1013 C; 735 G; 1730 T; 1 other;
     aagcttctgc tctctgacgt gacggtcgtg tttttgcata gctcctgagt ttttattaat        60
     atttattgtt ttctctcagt ttttaattgt gcttagtttk tttacgcttt cactggtgtt       120
     gttcgcttga cacccttgtg ttttatttcc ataattcgcc aaattaaata gtttaaacag       180
     tttttctgtt tcgtgattag tgtttggtgc atttaatttt tttctcttta tttttttctc       240
     tctcgtcatt gcttctgcag ttgctcccct catcgccccc atcataccat cagtgctagt       300
     ggctttgttg ttctatctgc tttgtgcttg tgctcagctt ctctcccgcg taatcacttt       360
     tgtaaggccg cctctcaaag ctcggcttat aactgttctt gcactctctc ttgtgctgtg       420
     cactctagct gttctctttg ttttatttgt aattattgat ttcttatcga taattatctt       480
     tgtgctgtgt atttaaattt ttctatttat tcttatatat ataaatttat ttatttattt       540
     ttattttttt ttttttgcct tgtgtttctt ttggctttat aatggcttgt tgtctaccta       600
     cttgcaagca ttctgatcgt tttgatgatc agtatagagc aatatcttgt tggctttgcg       660
     ataatcttat tcacttaaaa tgtgctggcc tcaatggccg cgactacgac aaattttctg       720
     gtttgtctgt gtctaagcct gagcttggct taatgcgctg gacttgccca tcttgtgcca       780
     gccagcagct tgattttagc cgtatgtata gggatattcg tttaaagttt ctttctttaa       840
     acaaactggc caaacagctg tctaacgagt gtgactctag cgtacattta ttgtcgcaat       900
     tcaagtttgt tccaccttct gagaagtcgc ccaagaaatg tacccttgag ttgcctcgca       960
     agcagtcgcc agcactctct attacatcgt ctcccatttt actttcgcct acaccatctt      1020
     cttgtccctc tttatgctct tcttttcaga ttgaagtacc cattacaagc cctggtgtac      1080
     ctcattctat ccctcacggg aactctgatc aatcacagga tcatgctagc tctcaatcac      1140
     ttgcggatcc caatgctcct ccgcctccac taactgtagt gcctcatcgc aaacaattat      1200
     ttatctctag gcttgctcct gatacttctg agtcgtctgt ggcagcttac attagtaata      1260
     tatgccctgc taaagtttta attcaaaagt ttaagttttc taggcctcgc gaaatctcct      1320
     cttttaaaat tacagtacct aatgagtatt tctcagctat ggttgacact aatttctggc      1380
     cagagggcct agttgtacac gagtttgcgc ccaataagcg ctcccgtccg ttgcctgtcc      1440
     accttcctaa tttatcttct gcttcaaaaa actaataacg tctagtcttt gcattcatta      1500
     tcaaaatgta agaggacttc ttaccaagct ctcgaacctg ttctgtgata gccaaacctt      1560
     ttcggctgac atattagctt tctctgaaac ttggcttaac tcctctgttt tggataatga      1620
     aattctttct aataacttta tttcttatag gcttgatcgt gttggtcgtc gtggcggtgg      1680
     agtacttatt gctgtcaact cgaatctgtg ttcaagtgtt gtgccgattg atctgccctt      1740
     aggtgttgag tttatttgcg tcgaaattac atgttccaac tttagcttat atatttcttg      1800
     ttcatatatt cctccagctt ctgatataac gacctatatg catcatgctg atgctttgca      1860
     aactattttt aatcgtctta aagatcgcga tttccttata gttttaggtg atttcaactt      1920
     gcctaatatt tcttggcttg ttgatgataa tctatctttc ttaattcctt catctcaaca      1980
     tgtttttctt gatagcctac ttgaatgtcc gctatatcag ttgaattctt tccttaactc      2040
     ttctaaaaga atccttgatc ttgtttttgt ctctgatccc actgttagtg ctgtatcccg      2100
     aacacagccc ctagtgaaac ctgaagatcc ctatcaccct accattgaac ttactatttc      2160
     ttacaattcc gttactaatt catttaataa catcgcaaat tctcgtcgta gatgttttcg      2220
     taaaacaaat ttcaatcttc ttaatagcct tattttctct tttgattggt catttctatt      2280
     tgagtgctgc gatatagatc gtgcagtgaa gtttttctac tctgctctta attctctaat      2340
     tgataaatgc gttccttatg tgaatgtctc taccgtctcc agcgcgccag tctggttcac      2400
     acgtaggctc tctaatctcc gtaacattaa atcgagatat tttaaaagat ttaaaaaaac      2460
     tggttcgcga cttgactatg caaattactg tatagccaaa tctcaatttt gtcttttaaa      2520
     cactcaatgc tacaataatt atatcgttcg ctgtaaggtt gaattttata agaaccccaa      2580
     aagattttat aactttgtta attccaaaag acgctctaat gtactaccct ccaccttcag      2640
     acttaatgac cagactgcta ataatgattc agatattgca gatctgtttg ctaaattctt      2700
     tcagtcgact tattctacta ctgtttcgga acccacaccc tatccctttt caatcccaca      2760
     tttaaattgt atgttttttc ctagtattac tgaagactgt attatctcta gcttgtcatc      2820
     tatgacgtct tccttcgttc ccggtcctga taatatacct agttgcatcc ttaaaatgtg      2880
     ttcgaattcc ctatctaagc ctttatctcg gttattcttt atatcgagtg agacttgtac      2940
     ctttcccgat atttggaagg agtcttttat tattccgctt tttaaaaagg gtagcaaatc      3000
     ggatgtttct aactaccgtg gcattgccaa actttcggca ataccaaagc tgtttgagaa      3060
     aattattacg tcttcccttc aacacctatc cagatccact atttctcctt gtcagcatgg      3120
     attcatgaaa ggtcgttcgt cgcttactaa ccttttagaa ttgactaccc ttgtacacca      3180
     tggcttccgt aaaaagtgtc aaactgatgt tatttatact gactttagta aggctttcga      3240
     tacggttgat cattctatgc ttctcgcgaa acttaacata atgggttttt ccccaaaact      3300
     gttggcttgg ttaaagtcgt atcttattgg cagaacccaa aaggtgtctt ttcgttcctc      3360
     gatatctaaa actgttcgag ttacgtcagg tgtaccccaa ggcagtcatc tgggccccct      3420
     gttatttaca ctgtttataa atgatttgcc tttggccttg gctcattcac gcgtgctcat      3480
     gtttgcggat gacgtcaaga tttgttattc ctataatgat ccttctttcc aacagtactt      3540
     gcaatcagat ctcgatgcgt tctgtgattg gtgccacgtt aataaattac accttaatgc      3600
     ctctaagtgt tcttttatga ctttcagtcg tttgtctccg ttcctagctc attactctgt      3660
     taagtctgtt ctgttagatt gtgtaccatc gttcaaagac ttaggcgtga tgtttgaccc      3720
     aaaactttca tttaatgttc atatttcttc tattgtcaat agagcatgca gccttcttgg      3780
     cttcattaaa cgttgggcca aagaatttga tgatccctat gtaacaaagg ttttatacac      3840
     ttcgttagtt cgccctactc tagaatattg ctcgccagtg tggaatccgc aatatgatgt      3900
     tcaccagcgt agtattgaat cggtacagaa gcaattcctt aagtttgcgt tacgcggtct      3960
     taattgggac ccgagtcttc gcctaccttc ttattctagc agacttcttc ttattaatct      4020
     tccttcactt tacaaccgta ggctcgtttt tggcattctc tttctccata aactagtcaa      4080
     cggcgaagtc atttctacta atttactaga tacgctatat ttttgtgttc cctcacgtcg      4140
     gaccagaaac ttttttccta ttcaccttag tagatgtctg actaactact ctcttcatga      4200
     accttttcgt gttctttgcc aatcttttaa caacctttct cacctaattt ctcctcatct      4260
     ttctgtcact tctcttcgcg ctatactttt taatcatcta cagcgaaacc aataataata      4320
     ttctggactt ggattggctg caactcatcc ctgaccacat tggctgtgaa tcggggcata      4380
     gctggcacct tatgcaaata aaacacctcc accgggtcgg ggatgtttag ttgtgtatat      4440
     agctaagcta tctttttcaa ttaattacta tctgtcttta gcttaagctt tttcgtcgac      4500
     tgctgtgtta gttgacgtaa ataaataaat aaataaataa ataaataaat aa              4552
//
ID   CR1-2_Hmel  repbase;    DNA;    INV; 2289 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a Non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2289
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2069
FT                 /product="CR1-2_Hmel_1p"
FT                 /translation="INSELNKINWVQQLSSHNVSDAVDRFYLLINNVVDKL
FT                 VPTKTVYSNNKFPAWYSRRLIKLVNKKLKLHRKWKIYGRSSDYKIFSDLRH
FT                 ETKHMELECYVRFIDKAESNIRYSSKQFWSFVKSKRXXDCIPDSXVFNDQI
FT                 SSDGQAIANTFNSYFQSVFEVNXRIVVGETNCASENNLSINNVSITREIIK
FT                 KYLLKLDLSKGSGPDKLHPIFLKCCSSEISVPLHILFSKSLQSGSLPHIWK
FT                 RSIIVPVYKSGDKQNVKNYRGISKLSVIPKLLEKIIYDNLFPLIRPQLIPQ
FT                 QHGFINKRSTETNLCEFLVEVLYAMNSGYQVDVIYTDFSKAFDKISHSLLI
FT                 DKIKQAGIHGDLLRWLESYLRDRTQAVAVRGFTSSFVPITSGVPQGSHLGP
FT                 LLFNIFINDIIQSFEHSKILLYADDAKIFKIIRDQEDCTKLQEDLVNFDKY
FT                 CASNQLSLNLDKCCVISFCRKKSPILFDYLIRNRKIKRVSIVKDLGVLLDA
FT                 GLLFDKHIANIIGKAYKMLGFIFRQGSDFKNIHTFKLLYNSYVRPYLEYAS
FT                 PVWNPQYDKYVFAIESVQNKFIRRLLYKFKLDNSHNLNILSLKXRRGYRDQ
FT                 IFLYKLLHNLIDSNYLLSNIHIKCPTFSARSRDTFYISARKTNYAQNCFIL
FT                 RSCRAYNNCFSDIDIFHSSLMQFSCKIIDKIQNSVNPNLM"
XX
SQ   Sequence 2289 BP; 767 A; 363 C; 345 G; 805 T; 9 other;
     ccattaactc tgaattaaat aaaattaatt gggtccaaca actctcttct cacaatgtct        60
     cggacgcagt tgatagattt taccttttaa taaataatgt tgttgacaaa ttagttccaa       120
     ctaaaactgt atacagcaat aacaaatttc cagcttggta ctctagacgt ttaataaaac       180
     tagtaaataa aaaacttaaa ttgcatagga aatggaagat ttacggcaga agtagtgact       240
     ataaaatatt ttctgatcta cggcatgaga caaaacatat ggagttggaa tgctatgttc       300
     ggtttattga taaagctgaa agcaatattc gttacagttc aaaacaattt tggtcctttg       360
     tcaagtcaaa acgartgamt gattgtattc ctgacagcat dgtttttaac gatcaaatct       420
     cctctgatgg ccaggctatt gccaacactt tcaactctta cttccaatct gtgtttgaag       480
     ttaatayaag aattgtagtt ggggaaacta attgtgcttc ggagaataat ctttctataa       540
     ataatgtcag tattactcgt gagatcataa aaaagtatct tttgaaactt gacctttcta       600
     aaggttctgg gcctgataaa ttacatccta tatttttaaa atgttgcagt tctgaaatct       660
     ctgttccatt acacatattg ttttcaaaat ctttacaatc ggggtctttg cctcatattt       720
     ggaaaaggtc tattattgtc ccagtctata aaagtggtga taagcaaaat gttaaaaatt       780
     atcgtggaat atcaaaactt tctgttattc ccaaattatt agaaaaaatt atttacgata       840
     atctatttcc tcttatacgt cctcaactaa tcccgcaaca acatggtttt ataaacaaac       900
     gctccacaga aactaacctc tgtgagtttc tagttgaagt cctctacgct atgaatagtg       960
     ggtatcaagt cgatgttatc tatactgact tttcgaaagc attcgacaaa atttcacatt      1020
     ctttgttaat tgacaaaatt aaacaagctg gtatacatgg tgatcttcta agatggcttg      1080
     agtcttatct ccgagataga actcaagctg ttgctgtgag gggctttact tctagttttg      1140
     tgcctattac ttctggtgta ccacagggtt cccatcttgg acctcttctt tttaacattt      1200
     ttatcaatga tattatacaa tcttttgaac attctaagat acttctttat gccgatgatg      1260
     caaaaatttt caaaattata agagatcaag aggattgcac taaactgcag gaggatctag      1320
     tcaattttga taaatactgc gcgtctaatc aattatctct aaatcttgac aaatgttgtg      1380
     taattagttt ttgtagaaag aaatctccca ttctatttga ttatctgatt cgcaacagga      1440
     aaataaaaag agtctccatt gttaaggacc ttggtgtatt attggacgcc ggtcttttat      1500
     tcgacaaaca tattgcgaat attataggaa aagcatataa aatgctcggt tttatattta      1560
     gacagggrag tgattttaag aacatacata catttaagct tttgtataat tcatatgtta      1620
     gaccttactt agagtatgcc tcgccagtct ggaacccaca gtatgataaa tatgtatttg      1680
     caattgaaag tgtccaaaat aaatttatac ggcgattact ttacaaattt aaattagata      1740
     actctcataa cctaaatata ctatcattaa aaaamcgaag aggatataga gatcaaattt      1800
     ttttgtataa attgttacac aatcttatag attccaatta tctgctaagt aatattcaca      1860
     taaaatgtcc aacttttagt gccagatcta gggacacctt ttacatttct gctcgaaaaa      1920
     ccaattatgc ccaaaattgt tttatactaa gatcttgtag ggcatacaat aattgcttta      1980
     gtgatattga catttttcat agtagtttga tgcagttttc atgtaagatc attgacaaaa      2040
     ttcaaaattc tgtaaatcct aacctaatgt aaaccttaac ctttcattcg taaaaatctt      2100
     tgtttttttt ttttyytttw agacagtaaa tttaattttt aattgttaat tagcaacata      2160
     ttcactccat gttttatgta taagtggaaa ctttattggc agttggaata tggatatgta      2220
     ttatactaaa aagtactgta aaatgctgtt tgtttcccaa cttaaaataa ataaataaat      2280
     aaataaata                                                              2289
//
ID   CR1-2_HMM   repbase;    DNA;    INV; 4938 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4938
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2781-2781 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           579..1655
FT                 /product="CR1-2_HMM_1p"
FT                 /translation="MADGKSVKYSCCPRLETSLEVLRCSLCKKLFHYSCLN
FT                 TTKTIFEDLTENFKTTWECPACNCKKPKSCNNNTPVGGLHSVDSQEPDIAT
FT                 QNVDMRKRANKRKCVSPDLSLLDIRQVIREELECIKSNMLEQFNAKIKEVI
FT                 QMVTEITSSMTFIEQQYEDIKKDLKEKETVIYSLEAENKSLRMTVNDLASR
FT                 TSAMEQHARANNVEIQCIPEHKSENLLSCVKQLASTVNYXINDSDIHLCTR
FT                 ISKFNRDSNRPRSVVVEFGCQRVRDEFLAATVNFNKKSTVKQDKLNTSHLG
FT                 IGGEQRPIYVVEHLSPALKALHAAARVKSKEKNYRFVWVKGGQIFMRKSEK
FT                 TEYIHVKNTAALANLS"
FT   CDS           1621..4464
FT                 /product="CR1-2_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLKILRPLPIYLDSLPQIQIVQHKACDGITTAKFNML
FT                 TCYYQNVRGLRSCTEKVRLKILSNNYDIIIFTETWLHGGISDSEIFDDRYT
FT                 VYRRDRETSIAQNSKQMGGGVLIAVSSCLISRRHLKYESEIEDLWVSIEIK
FT                 TKTTTEELLICAVYFPPPVTQLTLDSFIRCSNKVMVDLNKHILLAGDFNLG
FT                 DIKWCAQSNDIQHLVPHYIGHNSIRTKFLDFLALNELRQFNGIENPKHKML
FT                 DLMLARSNIINVDTCLSVLRNIDQYHPPLLVRISIQPTIIIDSNPQHTYNF
FT                 FKADYEAIIQSLNRVPWLSELSNLENIDAMVTKFYKMLYQIINTHVPKTCK
FT                 RKNKFPIWFTPNLIKLLKQKYKYHKKYKKFGNPLDKIEFEYLRKDCDILML
FT                 ECYNKYILKIESEIAKHPRYFWTHLKNLKKGNSKFPAIMSLGELKKSKDSE
FT                 ICDLFALHFSSVYDSHDQSMPITIKAPDIEEVDYIIITRKSVIKKLRRLDV
FT                 KKSCGPDNIPPFFLVKCADSISLPLALLYNVSIKSGTFPKAWKEARIVPIF
FT                 KSGKKDSVTNYRPISILSSMSKVFESIIYTHIYEHVKNHLSSNQHAFMTKR
FT                 STCTNLASFVNNICEKVDKNLQVDAIYTDFSKAFDKVSHTILVAKLRAYGI
FT                 NGYLLEWCKSYLKSRQSTVVLNGVTSKPFTASSGVPQGSNLGPLFFNIFIN
FT                 DICDIIQFSDFYIFADDLKLCRTICTNYDSLLLQQDLDNITEWCLTNKMAL
FT                 NTNKCSHIKFTRKRNKKQTSYKIGTQTLNEVDHIRDLGIIIDSQLRFIHQV
FT                 NKMLDSAYQSLGFVLRCSREFKRVETILQLYYCYVRSKLEYCCPVWSSVYK
FT                 VHCDRIENIQKTLVRHLEFRTGGPKSNTYRERLQRFKLHSLQERRALLQMT
FT                 FLHKLFNGNIDCSALLEQLNVNVPPVMDHDIRDPYLPPNVAKAI"
XX
SQ   Sequence 4938 BP; 1753 A; 823 C; 833 G; 1526 T; 3 other;
     ggaaagcaat atagattagc tccgtgtata taattgtatt aattaagtaa atagtgtact        60
     tgtggctcta attattgtac gagcactaac tatatatccc aaaaattaag tgccaacgtt       120
     atctccttgt tttaactatt gactgttata aaaactatat catgtggact ttgctgtggc       180
     agcggtaatg tcaaaaacaa tatttcacaa aataacatta agcgaaaggc cagtgagaag       240
     aaaaagtgtt aaaaaagtga tagtgaataa tattttatta tatttctagt gctgagtgtc       300
     gacttatttt gttgtaaatg aaagatttta aaaagtatat agtaataatt ggaacaaagt       360
     agtactgtct acactggact agtggtgaca taaggacaaa atgtgcaaat cgacccgagt       420
     tcaaacctac gtcaaaaaat aagatttctt tccttttttt tttttcttat ttttaaattt       480
     ttaatttaag tttggaccaa ctattttacg ttttaattaa tgttcctata aaatataagg       540
     gttattttaa acttatatat aaaacagtga cttgtaatat ggctgacggt aaaagtgtta       600
     agtacagttg ttgtccccgc ctagaaacat ctttagaggt gctccgatgt agcttgtgta       660
     aaaaactttt tcattactct tgtctcaaca ctactaagac aatttttgaa gatctaacag       720
     aaaactttaa aactacatgg gaatgtcctg cttgtaactg caaaaagccc aaaagttgca       780
     ataataatac acccgttggc ggattgcact cagtcgattc ccaagaaccg gatatagcga       840
     ctcaaaatgt agatatgagg aagagggcaa ataaaagaaa atgtgtgtcg ccagatcttt       900
     cgctgctaga tataagacaa gttattagag aagagttaga atgtataaaa tcaaatatgt       960
     tggagcaatt taacgcgaaa attaaagaag taattcaaat ggtaactgag ataacaagct      1020
     caatgacatt catagaacaa caatatgagg atataaagaa agatttgaaa gaaaaagaga      1080
     cagttattta ctctttggaa gctgaaaata aatcattgag aatgacggtc aatgatttag      1140
     cgtctagaac gagcgctatg gagcaacatg cgagagccaa taatgtggaa atccaatgta      1200
     tacctgaaca taaaagtgaa aatcttcttt catgcgtgaa gcagctagca tccactgtca      1260
     attatawaat caacgactca gatattcacc tgtgtacgag gatctctaaa ttcaatagag      1320
     atagcaacag acctcgatcc gttgtcgtag aatttggctg ccaaagagtt cgcgacgagt      1380
     ttttagcagc aacagtcaat tttaacaaaa agtcaaccgt taaacaagat aagctgaata      1440
     ctagccattt gggcataggg ggggagcaaa ggccaatata tgttgttgaa catttgtcac      1500
     cagctctcaa agcacttcat gcagccgcac gtgtaaaatc caaagaaaag aattaccgat      1560
     tcgtctgggt caaaggaggt caaatattca tgcgtaaatc agaaaaaaca gaatacatcc      1620
     atgttaaaaa tactgcggcc cttgccaatt tatcttgata gcttacccca aatacaaatt      1680
     gtacaacata aggcatgcga tggaattact acagctaagt tcaacatgtt aacatgttat      1740
     tatcaaaatg ttagggggct acgttcctgc actgagaagg tccgtcttaa gattctctct      1800
     aataattatg acattataat ttttactgag acttggctcc acggtggcat ttctgatagt      1860
     gaaatttttg acgatcggta tactgtatac cgacgtgacc gagaaacttc catagcacaa      1920
     aattccaagc aaatgggcgg gggagtcctt attgctgttt caagttgctt aatatcccgc      1980
     cgacatctaa aatatgaaag tgaaatagaa gacttgtggg ttagcattga aataaaaaca      2040
     aagacaacaa ccgaggaact cttaatatgt gccgtttatt ttcctcctcc agtgacacaa      2100
     ctcacgctgg actcatttat tcgttgttca aataaagtaa tggttgattt aaacaaacac      2160
     atacttttag caggagattt taaccttggc gatattaaat ggtgcgctca atcgaatgat      2220
     atacaacatt tggttcctca ttacatcggc cacaattcaa taaggactaa gttcttagat      2280
     tttttagcac ttaatgaact aaggcaattc aatgggatag aaaacccaaa acataagatg      2340
     ttggatctga tgttagcaag atccaatata ataaatgtcg acacctgctt aagcgttttg      2400
     cgtaatatag atcagtatca tccaccacta ttagtaagaa tatctatcca acctactata      2460
     ataattgact ctaatccaca acatacatat aatttcttca aagcagatta tgaggcaata      2520
     atccagtctt taaatagagt accgtggtta tctgagctgt caaacctaga aaacattgat      2580
     gcgatggtca caaaatttta caaaatgctt tatcaaatta ttaatacaca cgtgcctaaa      2640
     acatgtaaaa gaaaaaataa gtttccaatt tggttcactc caaatttaat caaattatta      2700
     aagcagaaat ataaatatca taaaaaatat aaaaaatttg ggaacccatt agataaaatt      2760
     gaatttgaat acctacgtaa agactgtgat atactcatgt tagaatgcta taataaatat      2820
     atattaaaaa ttgaatcgga aattgctaaa caccccagat acttttggac gcatttgaaa      2880
     aacctgaaaa aaggtaactc taagttccca gccatcatgt ctctcggcga acttaaaaaa      2940
     tctaaagata gtgaaatatg cgatctcttt gctttacatt tttcctcagt ctacgatagc      3000
     catgaccaat ctatgccgat taccataaag gcacctgata ttgaggaagt agattatatt      3060
     attattacac gcaaatcagt cataaagaaa ttaaggagac tcgacgttaa aaaaagctgt      3120
     gggccggaca acatcccacc attttttttg gttaaatgtg cagattcaat atccttacca      3180
     cttgccttac tttataatgt gtccattaaa tcgggaacgt ttccgaaggc gtggaaagaa      3240
     gcaagaattg tacctatatt taagagtggg aaaaaggata gtgttacgaa ttacagacca      3300
     atctctattc tttcaagtat gtcgaaagtt tttgaatcaa ttatttacac acacatttat      3360
     gagcatgtca aaaatcattt atcctccaat cagcatgctt ttatgactaa gagatcgaca      3420
     tgtactaatc ttgcttcctt tgttaataac atatgtgaaa aggtcgacaa aaatttacaa      3480
     gtggatgcga tatatacgga tttttctaaa gcmtttgaca aagttagcca tactatccta      3540
     gtagcaaagt taagagctta tggaattaac ggatatttac tggagtggtg taaaagttat      3600
     ttaaagtctc gccaatctac tgttgttttg aacggagtga catcaaagcc atttacagca      3660
     agttctggag tacctcaagg atccaattta ggacccttat ttttcaatat atttataaat      3720
     gacatttgtg atataattca attttctgac ttttatatat ttgctgacga cttaaaatta      3780
     tgtagaacaa tatgtacaaa ctatgacagc ttgttacttc aacaagacct tgacaatatt      3840
     acagagtggt gtttgacaaa taagatggcc ttaaatacta acaaatgcag ccatattaaa      3900
     tttactcgta agagaaataa aaagcagaca tcttataaaa ttggtacaca gacattaaat      3960
     gaagttgacc atattcgtga cttaggcata attattgata gccagcttag atttatccat      4020
     caagtaaaca aaatgctcga ttctgcttat caatcacttg gatttgtgct gagatgttca      4080
     cgtgaattta aaagagtgga gactatatta caattatact actgttacgt tcgcagcaaa      4140
     ctggagtact gctgcccggt ttggtcttct gtatataaag ttcattgtga tagaattgaa      4200
     aatatccaaa aaacactagt acgacacctt gaatttcgta ctggtggccc taagtccaat      4260
     acgtaccgsg aaagactaca gcgctttaag ctccactctt tgcaagaacg aagagcactg      4320
     ttacagatga catttcttca taagcttttt aatggtaaca tagattgtag cgctctcctt      4380
     gaacaactaa atgtcaacgt accaccagtg atggaccacg atatcagaga cccttatttg      4440
     ccaccaaatg ttgcaaaagc aatttaggaa agaattctcc gctagcgagg cttcaaagaa      4500
     catataatga gttgaacaaa ttaatttgcg acttagatat agctcacgac acatatacaa      4560
     tttttaaaaa caaaattagc aaatttatga cgcagaccaa tgcagaccgg cagcaatagt      4620
     tttctttaaa taattactat ttttttttaa tctataatat atatttataa tattttaaga      4680
     cattcaatta attgacattt ttgtttgaca tttttttttt tctaagacta ttttactgta      4740
     tgacttctat attactttaa tttacagtta caatttttaa tctatatgtt attaatacca      4800
     attgtaattt tattagtaga tacatgctgt gattgtcttt aattggaaaa gcatttagtt      4860
     tataaataga cctcgatgta atttggccat gttgtaatgt ttcttctgtt gacgatccta      4920
     aataaataaa taaataaa                                                    4938
//
ID   CR1-2_LMi   repbase;    DNA;    INV; 4265 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   09-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4265
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3110-3110 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(415..849,893..1381,1303..3426,3375..3641,
FT                 3578..4180)
FT                 /product="CR1-2_LMi_1p"
FT                 /translation="MNRDCDCCVRMQSELVTLRSQLQAVLTSVAQLEAAIE
FT                 GRRCCWPVVGTERTPVVSTDRPAPATCPDTASSEADTPPVVAWEVAPVRGR
FT                 RRKTFRGTDREASPVRLANRFEALSVQDNVPESDGVSHPEVTTQPARSGLS
FT                 QRWVCLRDGCQGGEEGQRALRVHTGGVIPDVERVLPDAMKGTGCSQLQVVA
FT                 HVGTNDVCRFGSEEILSGFERLSEVVKTASLACKMKAELTICSIVDRTDCG
FT                 PLVQSRVEGLNQRLRRFCDRVGCRFLDLRHRVVGFRVPLNRSGVHYTQEAA
FT                 TRVAGAVWRGLGGFLGVRSPLYAGSGYTGSGGCVAWTGRFFRIKSFGEIEN
FT                 GQSQRVQVDHRRNVDPETIGITVVNCRSCVGKVPELQALIESTETHIIIGS
FT                 ESWLKPEISSEEVFSKDLTVFRKDRLNKIGGGVFVAVKSSISCSEVEVDSS
FT                 CELLWVEVVPENRKKLIIGSFYRPPDSDDTIAERFKENLSLITKTYPTHTI
FT                 IVGGDFNLPSICWQNYIFKSGGRHKTSSENALNAFSENYFEQLVHEPTRIV
FT                 NGCENTLDLLATNNPELIMSIKTDTGISEHRAVVAKLNIESPKVTKNKRKV
FT                 YLFRKADRNKIHCFLKDSFHSFLTLNVGVDQMWLKFKEVVSTAIESFIPNK
FT                 LIKEGGDPPWYTKQVRTLLQKQRKRHTKFKRTRNPQDWRSYTEARNLARTS
FT                 MRDAYNTYHNETLSRNLTENPKRFWSYVKYTRGKTQTIPSLRDSNGDPADD
FT                 SATKAELLNIAFRNSFTKEDETNIPDFELRTEARMSNVEVDIIGVVKQLKS
FT                 LNKNKSSGPDCIPIRFLSDYAEAIAPYLTAIYNRSLKEGSVPKDWKVAQVT
FT                 PIFKKGSRSNPLNYRPISLTSICSRVLEHILYSNIMNYLEQNDLLTQGQHG
FT                 FRKYRSCETQLALYSHEVMSAIDKGSQIDSVFLDFQKAFDTVPHKRLLIKL
FT                 RGYGISPQICDWIGDFLSERTQFVVIDGKASTKTEVISGVPQGSVIGPLLF
FT                 LIYINDLGEICYWSSAVPYLHKRFRGNLSSSLRLFADDAVIYRLVKSSEDQ
FT                 NQLQNDLNKISLWCKNWQLTLNNEKCEVVHMSTKRNPLNFVYKINQSKSRP
FT                 HEYEKKSVKLCLQDKSIKVKAVNSTKYLGITITSDLNWKEHVDNVVGKANQ
FT                 RLRFIGRTLKRCNRTTKETAYTTLVRPFLEYCCPVWDPYQVGLTEDIERVQ
FT                 RRAARFVLSRYRGDSVTEMIQDLGWESLQQRRLSLRRGLLTKLQSPTFSSE
FT                 CENILLTPTYIGRNDHQNKIREIRARTERFRCSFFPRAIREWNGR"
XX
SQ   Sequence 4265 BP; 1256 A; 875 C; 1031 G; 1103 T; 0 other;
     agtcgccgag tggacgtcgt ccagtgcaca cctgtccagc gccagcacat tttcagttgt        60
     aagtgtaacc ggcttctctc tagaagctac atattttgac ttttcagtgc gctttccctt       120
     cagttcatta aagttattgt gtgctcgcgt ttttatttga ttcatattca cgttaaatat       180
     ctggttagtg tattattccg ccgtgtgaat cgcgtcgcga cagtcgtctg tctttgtttt       240
     ctgattagaa gcgacatata gtattttgat tttcgtctgc gcgttctcgt ttcagtttgt       300
     aaatttatac tgtgctctcg tgcatattag attcaaatcc gcgttttaac aaacagtgta       360
     gtcttccttt gagcgcatcg cgactgtagt ttttgttttc tcggcactgt aatcatgaat       420
     agggactgtg actgctgtgt gcggatgcag tctgagctgg tgacacttcg ctcccagctt       480
     caagctgtgt taacctcggt tgcacagctg gaggctgcga tcgaggggcg tcgttgttgt       540
     tggccggtag tggggaccga acggactccc gtcgtctcca ccgatcggcc tgcgccagcg       600
     acatgccctg atactgctag cagtgaggca gacaccccac ccgtggttgc gtgggaggtt       660
     gctccagtgc gtggcaggag gcgcaagaca ttccggggga ccgatcgtga ggcctccccg       720
     gttcgtcttg cgaacaggtt tgaggcgcta tctgttcagg acaacgttcc tgagtcggat       780
     ggtgtctctc atcctgaggt caccacccag cctgcaagat ccgggctttc acagaggtgg       840
     gtttgcttgt agttgggagc tccaacgtta ggcgggtgat ggagcccctt agagagatgg       900
     ctgccaagga ggggaagaag gccaacgtgc actccgtgtg catacgggtg gagtcattcc       960
     agatgtggaa cgagtcctcc cggatgccat gaagggtacg gggtgcagcc aactgcaggt      1020
     ggtggctcac gtcggtacca atgatgtgtg tcgcttcgga tctgaagaga tcctctcagg      1080
     ttttgagcgg ctatctgaag tggtaaagac tgccagtctt gcttgcaaga tgaaagcaga      1140
     gctcaccatc tgcagcatag ttgacaggac cgactgtgga cctctggtac agagccgagt      1200
     ggagggtctg aatcagaggc tcagacggtt ctgcgaccgt gtaggctgca gattccttga      1260
     cttgcgccat cgggtggtgg gtttccgggt tccgctgaat aggtcaggag tccactatac      1320
     gcaggaagcg gctacacggg tagcgggggc tgtgtggcgt ggactgggcg gttttttagg      1380
     ataaagagct tcggggaaat agaaaatggg caatctcaaa gggtgcaggt ggatcacagg      1440
     agaaatgtag atccggaaac tatcggtata acagttgtaa attgtcgtag ctgtgtcggg      1500
     aaagttccag aactgcaagc gttaatagaa agcaccgaaa cacacatcat tataggcagc      1560
     gaaagttggc tcaagccgga aataagttca gaagaagtat tttcaaaaga tctaacggta      1620
     ttcagaaagg atagattaaa caaaataggt gggggcgtgt ttgtcgccgt caaaagtagt      1680
     atttcatgta gcgaagttga agttgatagt tcgtgcgagc tattatgggt agaggttgta      1740
     cccgaaaatc gtaagaagtt aataatcggt tccttttacc ggcctcccga ctctgacgat      1800
     acaatagcag aaaggttcaa agaaaacctg agtctaatta caaaaacgta cccgactcac      1860
     acgataatag taggtggtga ttttaattta ccctcgatct gttggcaaaa ttatattttc      1920
     aaatcaggag gtaggcataa aacatcgtcc gaaaatgcac tcaacgcatt ctctgagaat      1980
     tacttcgaac aattagttca tgagccaact agaattgtaa atggatgtga aaacacactt      2040
     gatctcttag caacaaataa tcctgagctc ataatgagca tcaaaacgga tacaggtatt      2100
     agtgaacaca gagctgtagt agcgaaattg aatatcgaaa gtcccaaagt taccaaaaat      2160
     aaacgaaaag tatatttgtt caggaaagca gatagaaaca aaatacattg cttcttgaaa      2220
     gacagcttcc actcgtttct aacactaaac gtaggtgtag accagatgtg gctcaaattc      2280
     aaagaagtgg tatcgacagc aattgaaagt tttataccta ataaattaat aaaagaagga      2340
     ggcgatcccc cttggtacac aaaacaggtc aggacactgt tgcaaaagca aaggaaaagg      2400
     catactaaat ttaaacgaac acgaaatccc caggattggc gatcctacac agaagctcga      2460
     aatttagcga ggacttcaat gcgagatgcc tacaatactt atcacaacga aactctttct      2520
     cgaaatttga ctgaaaaccc aaagagattt tggtcatatg ttaaatatac taggggcaaa      2580
     acacaaacaa taccctcact acgtgatagt aatggcgatc ctgccgatga cagcgctact      2640
     aaagcagagt tactaaacat agcttttaga aactcattca ccaaagaaga cgaaaccaat      2700
     attccagatt tcgaattacg aacagaggcc agaatgagta acgtagaagt agatatcatc      2760
     ggagtagtga agcaactaaa atcacttaac aagaacaagt cttctggtcc ggactgtata      2820
     cccattagat ttctatctga ttatgctgaa gcgatagctc cttacttaac agccatatac      2880
     aaccgctctc tcaaagaagg atctgtacca aaagattgga aagttgcaca ggtcacacct      2940
     atattcaaga aaggcagtag gagtaaccca ctaaactaca ggcctatttc attgacgtca      3000
     atttgcagca gggttttgga acatatcctg tattcaaata ttatgaatta tctcgaacag      3060
     aatgatctat tgacccaagg tcaacacgga tttagaaaat atcgttcatg cgaaacacaa      3120
     ctagctcttt actcacacga agtgatgagt gctatcgaca agggttcgca aatcgattcc      3180
     gtatttcttg atttccagaa ggcttttgac accgtacctc acaaacggct tttaatcaaa      3240
     ttgcgtggtt atggtatatc gccccaaatt tgcgactgga taggggattt cctgtcagag      3300
     aggacacagt tcgtagtaat cgatggtaag gcatcgacta aaacagaggt gatatcgggc      3360
     gttccacagg gtagtgttat tggtcctctg ctgttcctta tttacataaa cgatttaggg      3420
     gaaatctaag tagctctctt aggttgtttg cagatgacgc cgtcatttac cgtctagtaa      3480
     aatcatctga agatcaaaac caactgcaga acgatctgaa taagatatca ctatggtgta      3540
     aaaattggca attgactcta aataatgaga agtgtgaagt cgtccacatg agtacgaaaa      3600
     gaaatccgtt aaactttgtt tacaagataa atcaatcaaa gtgaaggccg taaactccac      3660
     aaaataccta ggaattacta ttacttcaga cttaaactgg aaagaacacg tagataatgt      3720
     cgtgggaaag gcgaaccaga gactgcgttt tattggcaga acccttaaaa gatgcaacag      3780
     aactactaaa gaaactgcat acactacgct tgtccgtcct tttttggagt attgctgccc      3840
     agtgtgggat ccttatcagg tgggtttgac ggaggacatc gaaagagtcc aaagaagggc      3900
     agctcgtttt gtattgtcac gatacagggg agacagcgtt acggaaatga tacaggatct      3960
     gggatgggaa tcattacaac aacggcgctt atcgctgcgg cgtgggctac ttacgaaact      4020
     ccaatcgcca acattctcct ccgaatgcga aaatatattg ttgactccca cttacatagg      4080
     tagaaatgat catcagaata aaatacgaga aatcagagct cgaacggaga gattcaggtg      4140
     ttctttcttc ccgcgcgcta ttcgagaatg gaatgggaga taaatagtat aaggtggttc      4200
     gatgaaccct ctgccaggca cttaaatgtg atttgcagag tatcccatgt agatgtagat      4260
     gtaga                                                                  4265
//
ID   CR1-2_NVi   repbase;    DNA;    INV; 5153 BP.
XX
AC   .
XX
DT   14-APR-2009 (Rel. 14.04, Created)
DT   14-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5153
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 749-749 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           666..2003
FT                 /product="CR1-2_NVi_1p"
FT                 /translation="MAPGRNKPPDRCRSNFACCKHKPATTAVCVICDEAYH
FT                 HSCLKQKNENYKFVGNNLIVCPEHSYQNVTSKIDEEVLSESASLLIAQIKL
FT                 KKSEDVRNDLLAETSDKTQDLQEAESIEESDIELLRTENMLLKRLVSELTE
FT                 KNDLLKEKLQNIKSGTDVKLRTYSDTIKYSRATQKKVPKISVKKSNNSNID
FT                 VMKSVIECLTAEKNIQTKNIYVNKNDEVIISCLNDNSAELTETVLKEKLED
FT                 ECNITKNELNNPKIKIVGIDNYMNMQTKEIEKDINERNFSNFEKNGEVLHM
FT                 YKNKHNNLSTVLMEVPAEIYKHIRENSNKIFVGYQHCKVYDLVNICPCFKC
FT                 GRFGHNAKKCRNDTLCLKCSETHKTSDCDKDSAKCINCHYSNTRYKSKLDT
FT                 KHFTYDSSQCSILKKKLIDISTPSIIPSNPPYRQLNQSIATWNQQTGSKYL
FT                 *"
FT   CDS           join(1970..2197,2194..4311,4265..5074)
FT                 /product="CR1-2_NVi_2p"
FT                 /translation="MESANRLEVPVDVNNAADKEIQQLENNTPRNKSKKEP
FT                 QHNSRPHTRRDQQVLLNQPKLHSTASTPVNKSDKNKIKKKIGNMDTFDYLD
FT                 KFQNKSMQKERTCSNIENFNKVINNKKDIILHVNIRSINANFDKLKILIES
FT                 LAIKPAIVICSEVFEQVNYNLYQLNGSDYDYIIYYNDSRINRNDGVIVFVN
FT                 NNLVQHTEVVEAGRIKIINTRITLNDKSSLEISAMYRSHGIPKTEFILDLN
FT                 KYLTKKRNVKNHLVIGDFNIDLLDCDHYSQDFLCNFLDKGYIPGFVGITKP
FT                 PIGRAKGSCIDNIFIKSHNINTATYKIRHDITDHYPIIIAVNKLKEVTKKP
FT                 YVFLNYKKLTNYAIARNWNEIMSMDDPNLAVEKLLNEIKLCVELAKTKKKA
FT                 KKHTGRKNWITDAIVRSCETKEFLYNLWQLDVQNDQLKTQYKTYAKILDKV
FT                 ITDAKIKYESNLIQNNSNNPKKLWEIINMKIGKVKKCNDAINYIKINNQKI
FT                 TDKFQIAQNMNTFFCDIGRNLSANIVKPVNTELKLPAMNPISIFLKPTSTA
FT                 EIISIINALKLKNGGVDKINAKTLKLLCKHIAGPLTHIFNKCIEKSIWPDS
FT                 LKRAEVVPVYKSGEKHKITNYRPISLISNVAKIFERIIYNRIHDFVEQSNI
FT                 ISKQQFGFMRKIGTKDALKYITNALYNNVDKSKPTIITFLDLAKAFDTVDH
FT                 SILLAKLYCIGIRGQALDLLSSYLSDRYQVVKIDGIQSDSSVVNTGVPQGT
FT                 ILGPLLFILYINDVLREIPPPPPRGYNFVCRGRSPPPPPEAIISYADDTAI
FT                 IATGKNWIEAQDTMNNFLSVISEWLALNKLSLNVGKTVCMTFGSSIGSVPA
FT                 QVNIKILDKNITRVEHFKYLGIVFDSNLRWENHMKHIIGKTKYLVYIFYKI
FT                 SKTMPTETLRMIYYAFFHSIISYGIIAWGGAYRNSRDQVQKLQNKILKIIN
FT                 KNKFPSHDNPLNIVQLFALESLKLHYYDLKEKYLASDSITRNRSIIIPKTN
FT                 KRISNKNSYMKAINIYNELPNQLKVLNIEKFSQKRKIIEWIKSNC*"
XX
SQ   Sequence 5153 BP; 1987 A; 864 C; 897 G; 1404 T; 1 other;
     gacgtcacgc ttggtaagtc tagcagcatc atcaagtcgc tctgcttatt tagcattatt        60
     ttaatgtgtt ttctcactcg aatgagtgat ttttcacagc gggaaggatc ctctatctgg       120
     ctcgcacgct agcgctggaa aaccacgact ttttcgtgcg tttttatgag cctagaggag       180
     ttcttttcgc aagctggaga caacataacc tcatctgtca accactatac aattgctgct       240
     ggcgaacatc ctcatagctg tttcatcatg aggacatagc atcggctctc aacatcgcta       300
     aagaggaaaa gaaaaatctg gttttttgga acatcagccc caaattcaac cgaatggagg       360
     tcttctacag agatttttag aggttagata caaatagctc tatctctctc taaagagcgc       420
     gagatcagtc gtcaccgttg ctgcgcgtct gattccaata ttcgccacca gggtgcaaca       480
     ccatcgacac tggacaaacg ttggcacctc tgactgatca gccatggtgt ttttggcgcg       540
     ttattcaaaa atctgctaga gcgggagttt tgaaaatttt gaaaatttaa aaattttttt       600
     tctttttatc aaaaattttg ataacttttc tgagccaaaa ttagtacaat tcctcacatg       660
     ccaagatggc gccgggacgg aacaagcctc ctgacaggtg tcgcagtaat tttgcatgtt       720
     gtaagcataa accagcaaca acagcagtgt gcgttatttg tgatgaggct tatcaccata       780
     gttgcctcaa gcaaaaaaat gaaaactata aattcgttgg caataatctc atagtttgcc       840
     ccgaacatag ctatcaaaac gtaacctcaa aaattgatga ggaagtttta agcgaatctg       900
     cctcactttt aatagcgcag attaagctaa aaaaatctga agatgtgaga aatgacctat       960
     tggctgaaac tagtgacaaa actcaagact tacaagaggc tgaatccatc gaagaaagtg      1020
     atattgaact tttaagaact gaaaatatgc tgttgaaaag gttagtgagc gaactaactg      1080
     agaaaaacga ccttcttaaa gaaaaattgc aaaacatcaa gagtgggact gacgttaagt      1140
     tacgcacgta ctcagatacc attaagtact caagagcaac tcagaaaaaa gttcctaaaa      1200
     tatctgtcaa gaaaagcaat aacagcaaca tcgatgtcat gaaatcggta attgaatgtc      1260
     tcacagccga aaaaaacatt caaacaaaaa acatatacgt taacaaaaat gatgaagtta      1320
     ttataagctg cctgaatgat aacagtgctg aattaacgga gacagtactg aaagaaaaac      1380
     tagaggacga atgtaacata acaaagaatg aattaaataa tccgaagatc aaaatagtgg      1440
     gtatcgacaa ttatatgaac atgcaaacca aggaaatcga gaaggacatt aatgaaagaa      1500
     atttcagtaa ctttgaaaag aacggagaag tcctgcatat gtacaagaac aagcacaaca      1560
     acttaagcac tgttctgatg gaagtcccag ctgagatcta caagcacata agagaaaata      1620
     gcaacaaaat ttttgttggg tatcaacatt gtaaagtcta tgacttagta aacatctgcc      1680
     catgtttcaa gtgcggtaga ttcggacaca atgctaagaa atgcagaaat gataccttgt      1740
     gtttaaaatg ttctgaaacc cataaaacga gtgattgtga taaggacagt gcaaagtgca      1800
     taaactgtca ctatagtaat acgagatata aatcaaagct agacacaaaa catttcacct      1860
     atgactccag ccagtgcagc atcttgaaaa aaaaattgat agatatatcg actccgtcga      1920
     ttatcccatc aaacccacct taccggcaac tgaatcaatc tatcgcaaca tggaatcagc      1980
     aaacaggctc gaagtacctg tagatgtcaa taatgctgcg gataaggaaa ttcagcaact      2040
     tgaaaataac actccacgca ataaatcgaa aaaagaacct caacataact caagaccaca      2100
     tacaagacgt gatcaacaag tactattgaa ccaaccaaag ctgcactcca ctgcatcaac      2160
     accagtcaac aaaagcgata aaaacaagat taaaaaatag gtaacatgga tacttttgat      2220
     tatttagata agtttcaaaa taaatcaatg caaaaagaaa ggacatgcag taatattgaa      2280
     aattttaata aagttataaa caacaaaaag gatattatcc tgcatgtaaa tattcgaagt      2340
     ataaatgcaa attttgataa actaaaaatt ttaatagaga gtttagctat caaaccagcg      2400
     attgtgatat gttccgaagt ttttgagcaa gttaattata atttatacca actgaatggc      2460
     tcagattatg attatataat ttactataac gacagtagga taaataggaa tgatggcgtc      2520
     attgtatttg tcaataacaa tctagtccaa cataccgaag ttgttgaagc aggtagaatt      2580
     aaaataataa atactaggat aaccttaaac gataaaagta gtcttgaaat atcggctatg      2640
     tacagatcgc atgggatacc aaagactgag tttatactag accttaataa gtacttaact      2700
     aaaaagagaa atgtaaaaaa tcacttagtg ataggtgatt ttaatattga cctgctagac      2760
     tgtgatcact atagtcaaga tttcttatgc aattttcttg ataagggata tattcctggt      2820
     tttgtaggta ttacaaagcc acctattggt agagccaagg gatcatgtat cgacaatatt      2880
     ttcattaagt ctcataacat taacacagcc acatataaga ttaggcatga tataacggac      2940
     cattacccga tcataattgc tgtaaataag ctgaaggaag taactaaaaa accatatgtt      3000
     ttcttaaatt acaaaaaatt aacaaattat gcaattgcta gaaactggaa tgaaattatg      3060
     tcgatggatg atccaaattt ggctgtagaa aaattgttga acgagatcaa gctatgcgta      3120
     gaattggcaa aaacaaagaa aaaggctaaa aaacacactg gtagaaaaaa ctggataact      3180
     gatgcaatag tgaggtcgtg tgaaactaaa gagtttttat ataatttatg gcaactagat      3240
     gtgcagaacg atcaactaaa aacacaatat aaaacttatg caaaaatttt agataaggta      3300
     attaccgacg ctaaaataaa atatgaatca aatcttattc aaaataattc caataaccca      3360
     aaaaaacttt gggaaataat aaatatgaaa atcgggaaag ttaaaaaatg caatgatgcc      3420
     ataaattaca taaaaataaa taatcaaaaa attactgata aattccagat agcgcaaaat      3480
     atgaatactt tcttttgtga tataggtaga aatctaagtg ctaatatcgt taaaccagta      3540
     aatactgaac ttaagctgcc tgccatgaat cctatctcta tttttttaaa gccaacaagt      3600
     acagcagaaa taataagtat aatcaatgca ctgaaattga aaaatggagg agttgataaa      3660
     ataaatgcaa agaccttgaa actgctatgt aaacacattg caggtcctct aacccatatt      3720
     ttcaataagt gtattgagaa atcgatatgg ccagattctt taaaaagggc cgaagtagtg      3780
     ccagtctata aatcaggaga gaaacataaa atcacgaatt atcgacccat ctctctcata      3840
     tccaatgttg caaagatttt tgagcgaatt atatataata gaattcatga ttttgtagaa      3900
     cagagcaata taatctcgaa gcaacaattt ggtttcatga ggaagattgg tacgaaagat      3960
     gctctaaagt acataactaa tgcactatat aataatgttg ataagagtaa gcctacgatt      4020
     ataactttcc ttgacctggc gaaagctttc gatactgttg accatagcat actactggca      4080
     aaactttatt gcattggaat taggggccaa gcgttggatc tcctttccag ctatttgagt      4140
     gacagatacc aagtagtcaa aatagacggt attcaaagcg atagctctgt ggttaacaca      4200
     ggcgttccac aaggaacgat cttgggaccg ctacttttta tcctgtacat aaatgatgtc      4260
     ttgagggaga tccccccccc ccccccccga ggctataatt tcgtatgcag atgatactgc      4320
     tattatagcc actggtaaaa attggataga agcccaagat accatgaaca attttctaag      4380
     tgtgatatcg gagtggctgg cattaaataa gttgtcatta aatgtaggaa agactgtttg      4440
     tatgactttt gggagcagta tcggaagtgt accagctcaa gtaaacatca aaattctcga      4500
     caaaaatata actagggtag aacattttaa atatctagga attgtttttg atagcaacct      4560
     aaggtgggaa aatcacatga aacatataat cgggaagaca aaatacctag tatatatttt      4620
     ttacaaaatt tcaaaaacca tgcctacaga aactctcaga atgatctatt atgctttttt      4680
     ccatagtatc attagctatg gtatcattgc ttggggtgga gcatatagaa atagtcgaga      4740
     ccaagttcaa aagctacaaa ataaaatttt aaaaatcata aataaaaata agtttccatc      4800
     acacgacaat cctctaaata tagtacaact ttttgctctt gaatctttga agctgcatta      4860
     ttatgatcta aaagaaaaat acctagcatc agatagtatt actagaaata gaagtatcat      4920
     tatacctaag actaataaga gaattagcaa taaaaatagc tatatgaaag caataaatat      4980
     ttataatgag cttcctaayc aactgaaagt attaaatata gaaaaattct ctcaaaagag      5040
     aaaaattata gaatggatta aatccaattg ttgaaaaaat atttttatat attaataata      5100
     agaatagtaa taaataagaa aataaaaaaa atggtaactt gttgttaaaa aca             5153
//
ID   CR1-2_PPo   repbase;    DNA;    INV; 158 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-158
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3105-3105 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 158 BP; 47 A; 17 C; 18 G; 76 T; 0 other;
     tttattttta tttttcagaa actttttttt tattataatg ttgtgttagc ctgtaagtgt        60
     atccatgata ttgtgtttta gttataatta cttttcttca tcaacaaact tatttcatgt       120
     gatacgttgg cttcctattg aaataaataa ataaataa                               158
//
ID   CR1-2_TCa   repbase;    DNA;    INV; 2099 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   04-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   CR1-type retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   CR1-2_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2099
RA   Jurka J.;
RT   "CR1-type retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 736-736 (2009).
XX
DR   [1] (Consensus)
XX
CC   The 5'-end not determined.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..2099
FT                 /product="CR1-2_TCa_1p"
FT                 /translation="CLSTTRKQYPTEQNKELYTEYKNKHLLLLNSTKKSFY
FT                 ENKISVSDNRIKTIWSIIKSETKSVTNQLKLPTNVSADNFNDFFLHNPENI
FT                 IKNLTNGHNDSHTYLNKKYIKTNASMFFQPVIEDDIRIIINKLKNKTAEDI
FT                 YGISIHLLKVSATPILSIITNIINCCLSEGVFPSKLKISRVLPIYKKGDEN
FT                 DLKNYRQISILPAFSKILESVMCQQLVNFLEKNKYLSQQQFGFRKGFTTTD
FT                 AILSLVKDIQKAFENKQTYVGVFTDLSSAFDCVDHEILLDKLRFYGVRGTC
FT                 LKLFRSYLEDRQQYVKINASLSKAGHIKYGVPQGSILGPVLFLVYINDLEN
FT                 SMDKNILTIMYADDTSLGIPINKKKNVVPIKERMIRDADEWFAANKLALNK
FT                 TKTVTKVFELQSQLKQTEHIKFLGLFLDNKLSWAPHVYEVCNRLSTAVFAI
FT                 RKIRVSVNEYAALSTYYALFHSQINYSILLWGDAAYVHLHKILVLQKAAVR
FT                 AIAEICSDVSCRAYFKKYKIMTLFSLIIFHKVYDVRKNISSYPSLADVHSH
FT                 DTRNKTNLVNPRFRLAKSDNLSIRLYNSLSQNLKDQHLPLKTFKTKLINML
FT                 TECSLYSINEYLCVCVCVCYHYIFILLTSLILILLLLLLLL"
XX
SQ   Sequence 2099 BP; 814 A; 345 C; 304 G; 635 T; 1 other;
     actcaatatt tagaaccaca aactggataa taaaattaac aacggcagaa gacaaattta        60
     acgaattctt taaaatattt ttggagggtt ttaaaccatc ttcaactata ccttcaaaaa       120
     taaaaataca aaccgcaata aaataaaatc atggataaca cctgatataa aaaaaaagtt       180
     aatgtttatc tactacgcgt aaacaatatc ccacagaaca aaataaagaa ctatatacgg       240
     aatataaaaa taaacatcta ctgttgctaa actctactaa aaaatccttc tatgaaaaca       300
     aaatttcagt atcagacaat cgtataaaaa caatatggtc tatcatcaaa agtgaaacta       360
     aaagtgttac caatcaatta aaacttccca caaatgttag tgcggataat tttaatgatt       420
     tctttttaca taatccggaa aatattatca aaaatttaac taatggacat aatgattctc       480
     atacttactt aaataaaaaa tatattaaaa ccaacgcttc aatgtttttc caacccgtca       540
     ttgargatga catccgtata ataataaata aacttaaaaa caaaacggcg gaagatatat       600
     atggtataag cattcattta cttaaagtga gtgctactcc tattttaagt attattacaa       660
     atattataaa ctgttgtctg agcgaaggtg tatttccatc aaaacttaaa attagtagag       720
     tcttaccaat atacaagaaa ggagacgaaa atgacctaaa aaattaccgc caaatatcaa       780
     tattgccagc attttctaaa atattagaat cagtaatgtg ccaacagctc gtaaacttct       840
     tagagaaaaa taaatatcta agtcagcaac agtttggttt cagaaaaggc ttcaccacaa       900
     ccgacgcaat attgtcatta gttaaagata ttcaaaaagc atttgaaaat aaacaaacat       960
     atgtaggtgt attcacggac cttagctctg catttgactg cgttgatcac gaaattttgc      1020
     tagataaact acgcttctat ggagtaaggg gaacatgtct aaaactgttt agatcctatt      1080
     tggaagatcg acaacaatac gtgaaaatca acgcatcact aagtaaagca ggacatataa      1140
     aatacggggt acctcagggg tccatactgg gtcctgttct ctttctagtt tatataaatg      1200
     acttagaaaa ttctatggac aagaacatcc taacaataat gtatgctgat gatacgtcat      1260
     taggtattcc tataaacaag aagaagaacg tggtaccgat taaggaaaga atgatcagag      1320
     atgcagatga gtggtttgca gccaataaat tagccctaaa taaaacaaaa acagttacaa      1380
     aagtatttga acttcagtcg caactcaaac aaactgaaca cataaaattt cttggactgt      1440
     ttttagacaa caaactatcg tgggcacccc atgtttatga agtttgcaat aggttgtcca      1500
     cagcagtatt tgcaatacga aaaataagag taagcgttaa cgaatatgcc gctttatcaa      1560
     catattatgc cttgtttcat tcccaaataa attacagtat tttattgtgg ggagacgcag      1620
     cctacgttca tctccataag attcttgttt tacagaaagc tgcagtcaga gcaatagccg      1680
     aaatatgtag tgatgttagt tgcagagcat atttcaaaaa gtacaaaatt atgacactat      1740
     tttctcttat tatatttcat aaagtttacg atgttagaaa aaatatctca agttatccct      1800
     ctttggcaga cgtgcatagt catgacacaa gaaacaaaac aaatcttgtt aatccgcgtt      1860
     ttcggttagc aaaaagtgac aatctaagta tacggcttta taactctcta tctcaaaatc      1920
     taaaagatca acatcttcct ctcaaaacat ttaaaactaa attaataaat atgttaactg      1980
     agtgcagcct atacagtatt aatgaatatt tgtgtgtgtg tgtgtgtgtg tgttatcatt      2040
     atatttttat cttactgaca agtcttattt taatattatt attattatta ttattatta       2099
//
ID   CR1-3B_LMi  repbase;    DNA;    INV; 3842 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   11-DEC-2014 (Rel. 19.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3B_LMi.
XX
NM   CR1-3B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3842
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3111-3111 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(445..951,911..1792,1741..2040,1884..3767)
FT                 /product="CR1-3B_LMi_1p"
FT                 /translation="MEPLREMAAKEGKKANVHSVCIPGGVIPDVERVLPDA
FT                 MKGTGCSQLQVVAHVGTNDVCRFGSEEILSGFERLSEVVKTASLACKMKAE
FT                 LTICSIVDRTDCGPLVQSRVEGLNQRLRRFCDRVGCRFLDLRHRVVGFQVP
FT                 LNRSGVHYTQEAATRVAGAVWRGLGGFFFFRELCGVDWAVFFFFRLEGLGN
FT                 TQKGFQSQRVQVKDRTNTDLKTIGLTVVNCRSCVGKVPELQALIESTESQI
FT                 IIGTESWLKPEISSAEIFTKGQMVFRKDRLNKIGGGVFIAVTGGLSCSEIE
FT                 VDCSCELVWVEVIPDNQNKLIIGSFYRPPDSDDSIAEMFKESLDQISKTYP
FT                 KHTILIGGDFNLPSICWQKYMFKTGGKHKTSSEIVLNAFSENYLEQLVHEP
FT                 TRIVNGCENILDLLATNNPELIKSIKTDTGISEHRVVVARLNIGLSKSTKI
FT                 KRKYIYSKKQIKIRLTLSKKIYLFKKADKNSINAFLSENLQSFETNNVSVD
FT                 QMWLTFKEIISTTIDRFIPNKLTKRGLTRRGTQNRLDHCYKSKEKSMPNLN
FT                 AQKIPKTGNLLQKLEIQIHTKQINKEGADPPWYTKQVRSLLQKQRKKHAKF
FT                 KRTKNPQDWQSFTETRNLARTSMREAYNSYHNETLSRNLVENPKKFWSYVK
FT                 YTSGKTQSIPSLHDRNGDATDDSSAKAELLNTAFRNSFTREDEANTPEFVS
FT                 RTAASMRNLEVDTPGVLKQLKSLNKSKSPSPDCIPIRFLSEYADAIAPYLT
FT                 IIYNRSLSERSVPKDWKVAQVTPIFKKGNRSDPQNYRPISLTSVCSRILEH
FT                 ILSSNIMNYLEENDLLSHSQHGFRKYRSCETQLALYSHDVMSAIDKGCQID
FT                 SVFLDFRKAFDTVPHKRLLIKLRAYGISPQLCDWIRDFLSERTQYVVIDGK
FT                 SSSRTEVISGVPQGSVIGPLLFLIFINDLGDNLSSSLRLFADDAVIYRLVK
FT                 SPEDQKQLQNDLDKISAWCKNWQLTLNNDKCEVIHMTTKRNPLNFSYTINQ
FT                 SNLQAVNSTKYLGVTITNNLNWKEHIENIVGKANQRLRFIGRTLRRCNSST
FT                 KETAYTTLVRPILEYCCALWDPHQVGLTDDLEKIQRRAARFVLSRYRGESV
FT                 TEMMHELGWKSLKERRYLLRRDLFAKFLSPTFSSECEHILLAPTYIGRHDH
FT                 HNKIREIRSKTERFRCSFFPRAIREWNYREIS"
XX
SQ   Sequence 3842 BP; 1181 A; 779 C; 913 G; 969 T; 0 other;
     ttctcggtat tgtaatcatg aatagggact gtgactgctg tgtgcggatg cagtctgagc        60
     tggtgacact tcgctcccag cttcaagctg gaggctgcgg tcgaggggcg tcgttgttgt       120
     tggccggtcg tgggacaacg gatccgttcc accgatcggc ctgcggcagc gacatgccct       180
     gatactgcca gcaatgaggc agacacccca ccgtggttgc gtgggaggtg tccagtgcgt       240
     ggcaggcggc gaagacattc cgggggaccg atcgtgaggc ctccccggtt cgtcttgcga       300
     acaggtttga ggcgctatct gttcggacaa tgttcctgag ccggatggtg tcgctcatcc       360
     tgaagtcacc acgcagcctg cagatccggg ctttcacaga gggtgggttt gcttgtagtt       420
     gggagctcca acgttaggcg ggtaatggag ccccttaggg agatggctgc caaagagggg       480
     aagaaggcca acgtgcactc cgtgtgtata ccgggtggag tcattccaga tgtggaacgg       540
     gtccttccgg atgccatgaa gggtacgggg tgcagccaac tgcaggtggt ggctcacgtc       600
     ggtaccaatg atgtgtgtcg ctttggatct gaagagattc tctcaggttt tgagcggcta       660
     tctgaagtgg taaagactgc cagtcttgct tgcaagatga aagcagagct caccatctgc       720
     agcatagttg acaggaccga ctgtggacct ctggtacaga gccgagtgga gggtctgaat       780
     cagaggctca gacggttctg cgaccgtgtg ggctgcagat tcctcgactt gcgccatcgg       840
     gtggtggggt tccaggttcc gctgaatagg tcaggagtcc actacacgca ggaagcggct       900
     acacgggtag cgggagctgt gtggcgtgga ctgggcggtt tttttttttt ttaggttaga       960
     gggcctcggg aacacacaga aagggtttca atctcaaagg gtacaggtca aagataggac      1020
     gaacacagat ctaaaaacca ttggtctaac agttgtaaat tgtcgtagct gtgtggggaa      1080
     agtaccagag ctccaagcgc taatagaaag tactgaatct caaatcatta taggtaccga      1140
     aagctggcta aagccggaga taagttcagc tgaaattttt acaaaggggc aaatggtgtt      1200
     cagaaaagat agattgaata aaataggtgg tggcgtattt attgctgtca caggcggttt      1260
     atcctgtagc gaaattgaag tagattgctc ctgtgagttg gtatgggtag aggttatacc      1320
     tgacaaccag aataaattaa taattggttc tttttatcga ccccctgact cagacgattc      1380
     gattgcagaa atgttcaaag aaagcttgga tcaaatttca aaaacgtacc caaagcatac      1440
     aattttaatt ggtggcgact ttaacttacc ctcgatatgt tggcaaaaat acatgttcaa      1500
     aactggaggc aaacataaaa catcgtccga aattgtactg aacgcattct ccgaaaatta      1560
     tctcgagcaa ttagttcatg aacccactag aatagtaaat ggttgtgaga acatacttga      1620
     cctcctagca acaaataatc cggagctaat aaagagcatc aaaacagaca cagggattag      1680
     tgaacacaga gttgtcgtag cgagactgaa tatcggactt tccaaatcca ccaaaattaa      1740
     aagaaaatat atttattcaa aaaagcagat aaaaattcga ttaacgcttt cctgagtgag      1800
     aatctccagt ctttcgaaac taacaatgtg agtgtagatc agatgtggct tacattcaaa      1860
     gaaataatat cgacaaccat tgacagattc ataccaaaca aattaacaaa gagggggctg      1920
     acccgccgtg gtacacaaaa caggttagat cactgttaca aaagcaaaga aaaaagcatg      1980
     ccaaatttaa acgcacaaaa aatccccaag actggcaatc ttttacagaa actagaaatt      2040
     tagctcgaac ttcaatgcga gaagcttaca atagttacca caacgaaacc ctgtcacgta      2100
     atttggtaga gaatcctaag aaattctggt cgtatgtaaa gtatactagc ggcaaaacac      2160
     aatcaatacc ttcattacat gatagaaatg gtgatgctac tgatgacagt tctgctaaag      2220
     cagaattgct taacacagct ttccgaaatt ccttcactag agaagacgaa gcaaatactc      2280
     cagaattcgt atcaagaaca gctgccagca tgcgtaattt agaagtagat acccctggag      2340
     tattaaaaca acttaaatca cttaacaaaa gtaagtctcc cagtcccgac tgtataccaa      2400
     ttaggttcct ttcagagtat gctgatgcaa tagccccata cctaactatc atatacaacc      2460
     gctcgctcag cgaacgttcc gtacccaaag actggaaagt tgcacaggtc actccaatat      2520
     tcaagaaagg caataggagt gatccgcaaa attacaggcc tatatcactg acgtcggttt      2580
     gcagcaggat tttagaacat atactttcct caaatattat gaactacctc gaagagaacg      2640
     acctattgtc ccatagtcaa cacggattca gaaagtatcg ttcttgtgaa acacagctag      2700
     ctctttactc acatgatgtg atgagtgcta tcgacaaggg atgtcaaata gattccgtat      2760
     ttctagattt ccggaaggct ttcgacactg tacctcacaa gcgtcttcta atcaaattgc      2820
     gtgcttatgg aatatcgcca cagttgtgcg attggattcg tgatttcctg tcagaaagga      2880
     cacagtacgt tgtaattgac ggtaagtcat cgagtagaac agaagtgata tctggcgttc      2940
     cacagggaag tgttataggg cccctactgt tccttatttt tataaacgat ttaggagaca      3000
     atctgagtag ctctcttaga ctgttcgcgg atgatgctgt catttatcgg ttagtaaagt      3060
     caccagaaga tcaaaagcaa ctgcaaaatg atttagataa gatatctgca tggtgcaaaa      3120
     attggcaatt gacccttaat aatgataagt gtgaggtcat ccatatgacc actaaaagaa      3180
     atccattaaa cttcagttac acgataaatc agtcaaacct acaggccgtc aattcaacta      3240
     aatacctagg agtaacaatt acgaacaact taaattggaa agaacacata gaaaatattg      3300
     tagggaaggc gaaccaaaga ctacgtttca ttggcagaac acttagaaga tgcaacagtt      3360
     ctactaaaga aactgcctac actacacttg tgcgtcctat tttggagtat tgctgcgcat      3420
     tgtgggatcc acaccaggtg ggactgacgg acgatttaga gaaaattcag agaagggcag      3480
     ctcgttttgt attatcgcga tataggggag agagtgtcac ggaaatgatg cacgagttgg      3540
     ggtggaaatc attaaaagaa aggcgttatt tgttgcggcg agatctattt gcgaaatttc      3600
     tttcaccaac tttctcttca gaatgcgaac atatattgtt agcacccacc tacataggga      3660
     gacatgatca tcataataaa ataagagaaa tcagatcgaa aacagaaaga tttaggtgtt      3720
     cctttttccc gcgagctatt agagaatgga actatagaga aatatcataa aagtggttcg      3780
     atgaaccctc tgccatgcac ttcaatgtga cttgcagagt atctatgtag atgtagatgt      3840
     ag                                                                     3842
//
ID   CR1-3N1_LMi repbase;    DNA;    INV; 4017 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   non-autonomous; CR1-3N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4017
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3101-3101 (2014).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 4017 BP; 1141 A; 806 C; 809 G; 1261 T; 0 other;
     ctcagtgacc ggcggccagt gcacacgtga ccagcagcag ctctacattg tacggtaacc        60
     ggcttcttaa tagaagcgac ttatttacat ttcttgtgtg ctttctcttg cagctctttg       120
     tcgagtttag tttattctca aggttccttg ggtatcactt taattgctgt aaaattaaat       180
     tttatctcag gacatgtgtt gtagtttggg cggcatccgg ccaccccgtc aatattacct       240
     tgccgaatcc caataaccaa aaccgaccct gcatgtgcgg gaaaagggct aaaaagaaag       300
     aagaagaaga tgtgctgtag ttcgaagcca ttaatgccaa ttatcaggtt acagttataa       360
     cttggcttct gtgaaggttt aatataattc tggtactcgc agctcctaac atttcagttt       420
     gtcccactgg tttctgtggt ggcggaagaa gctatagcat ctacaaagac attctatgtc       480
     ggaacaagtt ttaacatcta caaagacatg ctatctccta aaagaaacag agtgactcta       540
     aaaaatttag agatacttta cgtctagcat ctacaaagcc atttatctcc taaaagaaac       600
     agagctattt ttaaaaattt agagatactt aacgtcttgg agtactacag cttcatttgt       660
     cctccttttt tgttgagtga taatttcatg tacttgtttg taattaaata tagtataatg       720
     aaggaaagaa acatcgttga attacgtgtt gtcccttttt gccttatttg atcacaattt       780
     ccttcctttc ttaatcttaa atttgcacca aaaattataa tcctcgtaat tatgttgatg       840
     cccagttgcc agtccctgcc ctatacaccg ttcgataaaa gaacaatcat gataccgtga       900
     ctaatcaagt gagattggcg tggctgcttc gagggcctac cgtgtccaat cacgtaatac       960
     gtttctttac ctctccttag caatgcctca ctgttgccgg tgactgtgca tctcaggaag      1020
     tactattagt gccatttgaa attcgcttct gaaagttggc aactacaatg tcaattccta      1080
     gagatccaag gagataattg tgggaccttt gcagttcact agttttctag tgttgtgaca      1140
     accctagcgc gtcacttgca aatagcctag tggagcgact cgaaaaaata ggtctaagaa      1200
     aaacttaatt cgttactcaa atcttcgtcg ttaagaatct aaacaactct ttgatacaga      1260
     gaatcagtac ttacgatttt gttgatcgcc gaagcaatag tgcggtattc atagtcgaca      1320
     ttggtttgtg ttatcatggt ttgtccactc aaagtggggc ttccttcaat tttcttttca      1380
     attaaaggtt ttaatcctct catttgtcat cgagtatcag aactcactga actctcgcct      1440
     tgctttgttt atacgcagat gcgatttact tatgtacatt tcttacaagt acgtccttgc      1500
     tatgaactaa agtcagccag gcaggccgtt ctatccgacc atttctttct tttttgcttt      1560
     aaacaaaagg tattcatcca tagatttgtc atcagaattc acttaacgct cgccttcctt      1620
     caaaatgaag aaaaatacgc gatctgagcc ggatgaatta attttgcagg cttcctctta      1680
     aaatcgcaag tggtgaaaac agttctaatg atgacaactt gatcgacttc tcttcttcaa      1740
     tagttttaaa tacatacctt gacactaaac atatgtatct atcttcatcc tcttatggca      1800
     gtttgaatct ttcgactact gcaaaaaatt aacattgtga tgaaactaag agggtagttt      1860
     cagatctact accaggaagt tcaagacctt acactagtgt ggctactttg atatcggaag      1920
     aagtgagtga actattagtt ttccacagaa gttttgacca gcctagaaat gagcggtata      1980
     tctccccatg tgcttacttt gaaagaagat gttattataa tgctcctcgg aaatttacgc      2040
     tcctgacgga tttctgaatg ggacgaggct aatagtcaaa aaagtataac gatatcatat      2100
     atttagaagc tgcgactagt gtaagtgctg gggaacaaat actgttacct cgcacagatt      2160
     tgacgacata ttgacggtac aatgcccttc tcttttaacg acggccattt caaaatagat      2220
     aagcattttg tatgacaatc aacaaagcac ggagtcaaac acttcatcga gtcggaatca      2280
     acctgcataa accagttttt aatcacggac acttgtatgt tgccttatcc gaggcaaaac      2340
     attcgaaaat gaacctaagg ggcgaggaaa aactaacttt gtctggaagg aagaattgta      2400
     aggaataata ttgtatgcac tgttaaaatt tataataaat tcagcggttg accattgaat      2460
     tttcagcatt gcctgctcca gcatggtatg tttaagtttt gttattttat cattatttgt      2520
     gctaatttat attttaattt atgaatctct ctaatttaag tttggtttta gaagtggttt      2580
     aacgactgaa aatgctatat tttcgtttca aagacaaagg gatgaaggca gtgcatcagg      2640
     agagacagac acttgaaagt gccactggga gaaaaaggag agactgtgag ggagacattg      2700
     gcaatgaaag ggagatgctg tgtatgaaaa cttcgtaacg ataagagtct ggctaaaagg      2760
     atttagcatc ttttgcgtta aaagagcgcg aatatgttcg catcccaaca ttttttgtga      2820
     gaaagtcgga atgagacaga tggtgtcccg ccttgatgcc agggtatttt aaagagaaca      2880
     atatttgcgt ttttgtgttc caatagacgt atttttcagt tgcttctgta agaaattctc      2940
     agtcggtatc gcctgacccc accctgtgag tgactcagga acttcctgca gtctagtggc      3000
     cgagcgaggt ggcgcggtag taacaccctg tggactcgta ttcgggctgt ggttcaaatc      3060
     cacctccggc catacatgtt taagttttcc gtagtttccc tatagcagac aaatgccggg      3120
     atagttcttt tgaaagggca cgcccgattt cctttcccat ccttaccaat tcattcgacg      3180
     tgagctctgc ttctaatgac cacgtggtca cgtggtctct ctctctctct ctctctttct      3240
     ctctctctct ctctctcttc ttttttactt ttttgctgtc ttggatacag gccagcacac      3300
     gacttgtttc cagtagctgc acggtgtttc ctacacagat agtttaaggt caatccagac      3360
     actacttaac aatggccgag aagtaatcgt ctgagatctt acgggcttga accaattaat      3420
     gggcctgaaa tttcgagaat tcttttttgg tttctattat cctgacacca tgcatttcta      3480
     caattaacta attaatataa ttagtattat tttgtacaac ctgatgcacc agctccacca      3540
     aagagactgc ctacatcaca cttgtgcgtc ctctcttgga gtactgttgc cccttgtggg      3600
     accctcacca ggtgggactg acggaagata ttgagaaggt tcagagaagg gcagctcgtt      3660
     ttgttttatc acgttacggg ggggaaagcg tcacggaaat gttgcacgaa ttggggtgga      3720
     aatcattaaa agaaagacgt tattcattgc ggcgtgatct gtttgcgaag tttcaatcac      3780
     cgacttttag ttctgaatgt gaaaatattt tgctagcacc cacctactta gggagacatg      3840
     accatcccaa taaaataaga gaaatcagat cgaaaacgga acgatttagg tgttctttct      3900
     tcccgcgcgc tattagagaa tggaacggta gagaaaagtt atgaaggtgg ttaatgaacc      3960
     ctctgccagg cacttaaatg tgatttgcag agtatctatg tagatgtaga tgtagat         4017
//
ID   CR1-3_AG    repbase;    DNA;    INV; 4693 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   04-SEP-2010 (Rel. 15.10, Last updated, Version 3)
XX
DE   CR1-3_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; CR1 clade; DNA/RNA-binding; PHD finger;
KW   AP endonuclease; CR1-3_AG.
XX
NM   CR1-3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4693
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-3_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 14-14 (2003).
XX
DR   [1] (Consensus)
XX
CC   CR1-3_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-3_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~3% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-3_AG occurred less than 2 million years ago.
CC   The 3' terminus of CR1-3_AG is composed of the ATAA
CC   microsatellite.
CC   CR1-3_AG encodes two proteins: a 418-aa CR1-3_AG-ORF1p
CC   (positions 1057-2310) and 910-aa CR1-3_AG-ORF2p (positions
CC   2314-5043). CR1-3_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 5-40). CR1-3_AG-ORF2p is composed
CC   the AP endonuclease and reverse transcriptase domains.
CC   Putatively, the last protein is translated through the ribosomal
CC   frameshift.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..1518
FT                 /product="CR1-3_AG-ORF1p"
FT                 /translation="MAGICSACANDIVAADRIVKCQGWCNSEFHFSCSGLS
FT                 EELSATIESCAQLFWACKACVKFHKDPRTAVLRSSTPYTHTSVDLLSSIAD
FT                 LKAGLRSELSQHTTAIKLELLEVLKAEIRSCLRSTHAATDLPSQRPIHHNS
FT                 APKLFNSVVKNIPGTITPTLQQYPSLAASLSVSANEPSSFTNMPPXYNPQT
FT                 PLLRGSGSPLDSDTLDTIPHTDTRMWLFFTRFSPSVTTEQISLMVQVRLAL
FT                 DKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALSPKTWPSALTYRE
FT                 FRDYRTNNYNTNTCATTETNSMLDQNVTLATDTYHNPLSHSGGSAAMPTTT
FT                 TDTLAQPVTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAA
FT                 PKKRPKRGNAKRTDESADAGPSDE"
FT   CDS           2314..5043
FT                 /product="CR1-3_AG-ORF2p"
FT                 /translation="QSCTASGDAPRSAHPSLSIYYQNVRGLRTKTTNLRLA
FT                 LSESEYDFIILTETWLTQSIPSSLLTDDHYHIYRCDRNLSNSALSRGGGVL
FT                 IACSSSIPTCEIASPNTILEQLWIKTLLPGVSVYIGVVYIPPSHANDPAVM
FT                 NALHDSVREISSRIKESDLLYVFGDFNKPDIRWELTNTSEATDCSPCYSVM
FT                 HYAPLCNSVANTDFVDGLHSTGLFQLSGIANQSGRQLDLVFANLAATNILC
FT                 DSITPLHSVNGTSALENSLPYVTHCSIPLLSEDFHHPSLDMMIYYPVQLSH
FT                 TTNSHTRSTVNRNFFKTNVERMNSLIVSFDRNFDCSNFATIDEATDFFSVF
FT                 MRSAINSCVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIF
FT                 FDALNNYRRXNRVLYRSFIRRTERQLFSKPTRFWSFWNKRRNIRSIPPSMS
FT                 YNGXTSIDTSDICNTFANRFADAFTLPVHNPNTLAEATRNTPSDAIDFIIP
FT                 TIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMR
FT                 GTYPASWKHARMVPIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTA
FT                 VQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDNMDRGTQVDAVYIDFRAAFD
FT                 SISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGV
FT                 PQGSNLGPLLFLIYINDLSFVLPPGQHLMYADDVKIFAPVRNDSDCVRLQT
FT                 ILENLDSWCSRNALQVCADKCQCISFSRARHPITFTYTMLNTALARTTCIR
FT                 DLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFTDPMCVKSIFCAIV
FT                 RSCLEYCCPIWCPLGVGDINRLEAIQRRLTRYAVRLLPWQSHHARPTYHQR
FT                 CLLLGH"
XX
SQ   Sequence 4693 BP; 1219 A; 1248 C; 899 G; 1320 T; 7 other;
     gatctgtgat gtacatatta taatgtacac actctcattc caaacgtcac tgtgactggt        60
     cgaagattct ctgcgctccg actattttca atattattcc gagaaaacct gtatctttgc       120
     tgaacctgtt gctggtgtag gtgacttcat tgcctggttt tgtttaacaa ctggattatt       180
     caccgtcaat cacctggaaa cgttttccgg cccacaatca ttacgtcgct tcaacatcac       240
     aatcaatcgc tcatccacaa agcaatggct ggtatttgtt ccgcctgcgc taacgacatc       300
     gtagctgctg atcgcattgt gaaatgccag ggttggtgca actctgagtt tcacttctca       360
     tgcagcggac tttctgagga actgtccgct actatagagt cctgtgcaca acttttttgg       420
     gcctgtaaag cctgtgtaaa gtttcacaag gatccgcgta cggccgtgtt gaggtcatcc       480
     accccgtaca ctcacacttc tgtcgaccta ctgtccagca tagccgacct taaagcgggc       540
     ctccgtagcg agctgtcaca gcataccaca gctattaagt tagagcttct ggaagtttta       600
     aaggcggaga tccgttcctg cttgcgatcg acgcatgccg ccaccgattt accgtctcaa       660
     cggcccattc atcacaattc agcgcctaaa ttgtttaatt cagtggtcaa aaatatccct       720
     ggtactatta cacccacact acaacagtat ccatcattag ccgcttctct tagtgtgagt       780
     gcgaacgaac cgtcatcctt caccaatatg ccaccasttt acaacccgca aacaccacta       840
     ctcagaggat cgggatcgcc gctcgattct gacacactag acaccatccc acacactgat       900
     acgcgaatgt ggctattctt tacgcgtttc tccccatcgg ttaccactga gcagatttct       960
     ctcatggtgc aagtacgtct agcactcgat aagcgggatg tgtttgtaca ccgtctgacg      1020
     aagcttggtg ccgacactag tacactctca tttatctcat ttaaggtggg cataccagcc      1080
     actctacgca acaaggctct ctcacctaag acatggccct ctgctcttac ctaccgagag      1140
     ttccgtgact atcggaccaa taattataac actaatacct gtgcaacaac tgaaacaaat      1200
     tcgatgctcg atcaaaacgt tactctcgct accgacactt atcataatcc tctctcacat      1260
     tctggaggga gtgccgcgat gccaactact acaacagata cgctcgcaca gcccgttacg      1320
     atttcctcac ctgccatgac cactacagac acagctttgt ttacaaacga accacatctt      1380
     gaccttaatg agcgaatgct tgttaccacc acacctacca ggtcacctcc cgaatgctta      1440
     gccgctccta aaaaacgacc gaagcgcgga aacgctaaac ggactgatga atctgctgac      1500
     gctggcccgt cggatgaata gcaatcttgc actgcatccg gcgatgcacc tcgctcagct      1560
     catcccagtc tctctatcta ctaccaaaat gtacgtggtc tacgaacgaa aactacaaat      1620
     cttcgcctgg cgctatcaga atcagaatat gattttatca ttctcaccga gacttggctt      1680
     actcagtcca taccttcttc gctcctcact gacgatcatt atcatatcta caggtgcgat      1740
     aggaatcttt ccaacagtgc cctctcacgc ggtgggggtg ttttaattgc atgttcctct      1800
     tcaataccga catgtgaaat cgcatcgcct aataccatac tggaacaact ttggatcaaa      1860
     acattgctgc caggtgtctc tgtttacatc ggcgttgttt acattccgcc tagtcatgcg      1920
     aatgaccccg cagtgatgaa cgctttacat gatagtgtac gtgaaatttc aagccgcatt      1980
     aaagagagcg atttattata cgtcttcgga gatttcaata aacctgatat cagatgggag      2040
     ctgactaata catcagaagc caccgattgc tctccatgtt attctgtcat gcattatgca      2100
     cctttatgca attccgtggc taataccgat ttcgttgatg ggttgcatag taccggatta      2160
     tttcagttga gtggtattgc aaatcaatct gggcgtcaat tggatctggt cttcgcaaac      2220
     cttgccgcaa ccaatatttt gtgcgactca atcacacctc tgcactctgt gaatggtact      2280
     tcggctctag agaactccct cccatacgta acacactgta gtattccact tctcagtgag      2340
     gactttcatc atccttcatt ggatatgatg atttattatc ccgtacaact atcccacacc      2400
     accaacagtc acactcgcag tacagtcaat agaaatttct tcaaaacgaa tgtggaacgt      2460
     atgaattctc ttattgtgtc gtttgaccgc aattttgact gctccaactt tgccactatc      2520
     gacgaagcca ccgatttctt tagcgttttt atgcgctcag cgattaattc ctgcgttcct      2580
     gttgctcaac gaaagtctgg ccccgattgg tctaatgcat ctttaagacg gttgaaaaaa      2640
     ataaaatcaa aagcctacgc ggattacagt agaacgagat catcgctgca taggagaatt      2700
     tttttcgatg cactgaacaa ttatcgtcga cawaatcgtg tgctctaccg ctccttcatt      2760
     cgccgtactg aaaggcagct gttttctaag ccgacacggt tctggagctt ctggaacaaa      2820
     cggcgcaata taagaagtat ccctccgtca atgagctaca atggcsaaac tagtatcgat      2880
     acatccgata tttgcaacac tttcgccaat cgtttcgctg atgcattcac ccttcctgtt      2940
     cacaatccta acacactagc agaggccacy cgcaatactc catcggatgc tatcgatttt      3000
     attataccca caattgacga agcattaatt gcgcgcacac tcaacgatat aaaaccatct      3060
     acatcatctg gacctgacaa tattcccgca tacattttga agcactgccg tcaatcactc      3120
     gcacccattc ttgccaaaat atttaatgat tcccttatgc gtggcacgta tcctgcgtcc      3180
     tggaaacacg cgcgaatggt tcctatccat aaaaaaggca gtcgacttca tgctagtaat      3240
     tatcgtggca ttgtttccct atgcgcttgt gcaaaggtgt ttgagctcat tctatacaat      3300
     ccgctactca cagcagttca aaactatatg agccctagtc agcatggatt tctcccaagg      3360
     agatcttcca ccacaaatct tgctgaattt gttggytact gcttcgacaa catggatcgt      3420
     ggtactcaag ttgatgcagt atatatcgac ttcagggctg cgttcgatag tatytctcat      3480
     gatattctac tctcgaagct aaaaaaactc ggtttcctcg actggcacat cacctggctg      3540
     cgttcatatt taactggtcg ttcgtactac ataagcatag gatctcatcg ttctcactcc      3600
     ttcaccagct cctccggtgt gcctcaaggg agtaatttgg gaccgctact cttcctcatc      3660
     tatataaatg atctatcttt cgttttaccg ccaggccaac acctaatgta cgccgacgat      3720
     gtaaaaatat tcgctccagt tagaaacgac agtgactgtg tacgccttca aacgatcctt      3780
     gagaatctgg atagctggtg cagcagaaac gccctccaag tgtgtgctga taaatgccag      3840
     tgtatatcat tcagcagagc ccgtcacccc atcacgttta catacactat gctcaacacg      3900
     gctttggctc gcacgacatg tatccgtgat ctgggggtgc tactcgatca gaagatgtca      3960
     tttcgccctc acattgatag cgttgttgcg aagggaaatc agctacttgg tttaattacg      4020
     cggacctgta gcgagtttac cgatcccatg tgcgtcaagt cgatcttctg tgccatcgta      4080
     aggtcgtgcc tggagtactg ctgtccgatc tggtgcccgc ttggcgttgg tgacatcaat      4140
     cgcctcgaag ccattcaacg gagactcacc aggtacgcgg ttcgactcct tccatggcaa      4200
     tcccaccacg ctcggcccac ctaccatcag cggtgtctgc ttctcggaca ttgaaccact      4260
     ctgctctcga cgtaaaatat gacgcccaat gccttttcat attccggctc cttaaachcg      4320
     gagagatcga ttccccggca tcgaatacta gccagcatca atttgttcgc tccctgtcgg      4380
     attcttagat ccaatttcca tctccgtgta ccgcgtaccc gcaacaacca ttagccaggg      4440
     acaccctatt atacgtatgt ccctcgagtt caatgaagtg ttagatttgt tcgattttag      4500
     tatgtctact tctacgttca aggagaaatt gcgtctacgt cacatttaat gtttgcttat      4560
     aactagaggt ctatttatat gctataaatg atcattgtta tacatacctt aatttaatta      4620
     taaggttgcc gattagacac gatggtccgt cggtttatat atgaaataaa taaataaata      4680
     aataaataaa taa                                                         4693
//
ID   CR1-3_CQ    repbase;    DNA;    INV; 4443 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4443
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 3-3 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..660
FT                 /product="CR1-3_CQ_1p"
FT                 /translation="HRSCIDGLNRTAFEAIGKFQKNCYWLCDVCAGRFDQF
FT                 VQSMDVDDDPSPATDVSKLSEAVEKLSGIVNELSGQMKEKSSKKSFADVVF
FT                 PGSKREREDDVNNEPPAKIKTVCGTRTIQHKIKTVVNERELFWVYLGRLDP
FT                 CHTDEEIAEMTQECLDLPEXPKVKRXVKKDADTSKLSVVSFRVLLPDDLRD
FT                 TALQPDTWPTGVTVREFDFDLRPSPRFRQL"
FT   CDS           788..4390
FT                 /product="CR1-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRPGPVYGHGNGAFQAALAGKYIHSTRTNPRLDASLH
FT                 YSELPTADKVMPSPEFDADIGLGRMYRGIKVDPRFPVTTEPLTASVASSSS
FT                 HLSRPGLVNGTRSGVNYSLLSGKYLHFPSTIPPPDDPLVSSHFHPSHAEHD
FT                 QPLPLIGPRQQNLLSAVAEVADHPGRTYHGNVECPRSPVTVAPSVSSGEYV
FT                 CSSSPSRPGAVCGQGCGGFRPASSGEYTCIDPNSPALNDCTLQRPAVPNGV
FT                 ISVYYQNVRGLRTKIDDMYLASQDCGHDVIILTETNLKDDITSLQLFGSAF
FT                 NVFRCDRSRKNSEKQSFGGVLIAVSKHYSNAHEVETARGNELEQLCVAASI
FT                 QGENFLFCAIYVPPEKRSDVNLINEHIATIDELRGTKCADHTTVVCGDYNQ
FT                 SHVQWSLIGSIARPTSPLTAASTMALVDGMDYLNLCQTNLVHNCFGRILDL
FT                 VFCSSQRSVAVDVAASALALPVDSHHPPLVCHFPIFKRPQERRGNSANPAL
FT                 RLLNFRKIDFAAMTTFLLSVDWSLCLTNLGVDEMANTFCSIIRNWMNQHVP
FT                 TVKPRVSPAWSNSRLRQMKRLKNACQRALRRRRSVVNKMKFRRSSDAYRKL
FT                 NSTLYKSYVLRVQTNLRRNPRGFWSFVNAKRKSKDIPDSVFLDQHESGSPE
FT                 MSCDLFAQHFKSVFAAGCATDEEAAVAANNVPENLLDLSTFDVSADMVKQA
FT                 LAKLKSSFSPGPDGIPSVVYRRCADALVAPLSVIFNKSFSQQTFPSTWKQS
FT                 FIVPVHKSGDKRNVRNYRGVTNLSAASKLFEIIVSKVIQRQAMRYLSDDQH
FT                 GFIPKRSVTTNLLEFTSTCIGHLENKAQVDVIYTDLKAAFDRIDHNVLLRK
FT                 LSRLGLSVQLVNWLRSYLVGRSLRVRLGTSVSAVFVNNSGVPQGSNLGPLL
FT                 FILFFNDVLFLLGPGCALVYADDLKLFLPIKATDDCCRLQALLDIFVSWCR
FT                 RNKLVVNISKCLVMSFTRSKRMISFDYSIDGVVLQKVDQVRDLGVLMDPKL
FT                 TFDLQRVSVIAKANRQLGFISKISKDFRDPYCWKSLYCSLVRPILEYAAIV
FT                 WLPYQLTWILRIERVQKRFIRRALRSLPWRDPVNLPPYPARCRLLNIQPLQ
FT                 SRRTTQQATFVAKLLNGEVDSPNLLSLINFRTPQRTLRDSTLLARRFHRTA
FT                 YGFNEPVSSMIRAFTAVEDLFEFGESSVRFRDKINRTQTFIH"
XX
SQ   Sequence 4443 BP; 1063 A; 1193 C; 1066 G; 1119 T; 2 other;
     cacagatcgt gcattgacgg tctcaaccgt actgccttcg aggccatcgg caagttccag        60
     aaaaattgct actggctttg cgacgtttgt gctggtcgtt tcgatcaatt tgtacagtcg       120
     atggatgttg atgacgatcc ttcacctgcg actgatgttt ctaagctgag tgaagctgta       180
     gaaaaactta gcggaatcgt gaacgagctc tccggtcaga tgaaggaaaa gagctcgaaa       240
     aaaagtttcg ctgatgttgt cttccctggt tcgaaacgcg aacgagaaga cgacgtaaac       300
     aatgaacctc cagcgaagat caaaacagtt tgtggtacgc gcaccatcca gcacaagatc       360
     aagacggtgg tcaatgaaag ggagttgttt tgggtttacc ttggccgact tgatccctgt       420
     cacaccgatg aagaaattgc cgaaatgact caggaatgcc tcgacctccc tgaacmaccc       480
     aaggtgaaaa ggcwcgtcaa gaaagacgcg gacacctcca agctgtccgt cgtgtcgttc       540
     cgggttctgc ttcccgatga cttacgggac actgcacttc aaccggacac ctggccgact       600
     ggagtgacgg ttcgcgagtt cgacttcgat ctgcgaccct cacctagatt tcgacagctg       660
     tgagcatcac ctcatctatg ttgctgacct gggacgttat cacaaaagcc gtttggaagt       720
     gccccgtgcc cccgtcacag ctgtgccaca ccattcttca tcaccaagct attgttcctg       780
     ctattgtatg cgtcccggcc ctgtgtacgg ccacggcaac ggggccttcc aagccgctct       840
     agcaggcaag tacattcatt cgacaagaac caatccgcgc cttgatgcgt cgctacatta       900
     cagtgagctg ccaaccgccg acaaagttat gccgagtcca gagtttgacg cagatattgg       960
     tctgggacgc atgtaccgag gcattaaggt tgatccccgc ttccccgtca caactgagcc      1020
     cctcaccgct tccgtcgctt cgagctccag ccatctcagt cgtcccggcc ttgtgaacgg      1080
     gaccagaagc ggggtcaact acagcctgct ctcaggcaag tacttgcact ttcccagtac      1140
     aattccgccc cctgatgatc ctttggtttc cagccatttc cacccatctc atgccgagca      1200
     cgatcaaccg ttgccgctca tcggtcctcg ccagcaaaat cttctcagtg ctgtcgctga      1260
     agttgctgat catccgggac gcacgtacca cggcaatgtg gaatgccccc gctcccccgt      1320
     cacagtcgcg ccatccgtca gttccggtga atatgtctgt tcgagctcac ctagtcgtcc      1380
     cggcgctgtg tgcggtcaag gatgcggggg cttccggcct gccagctcag gcgagtacac      1440
     atgcattgat cccaactctc ccgcactcaa tgattgcact ttgcagcggc ctgctgttcc      1500
     gaatggcgta atcagcgttt attaccaaaa cgtaagaggc ctcagaacga agattgatga      1560
     catgtactta gcatcgcaag attgtgggca cgatgtaatc attctgacgg agacgaattt      1620
     gaaagacgac atcacatcac tgcaactctt cggatcagca ttcaacgtgt ttcgttgcga      1680
     ccggagccgg aagaacagcg agaagcagag ctttggcgga gtcttgatcg cagtatctaa      1740
     acactacagc aatgcacacg aagtcgaaac agctcggggc aatgaacttg agcaattgtg      1800
     tgtagcagcg agcattcagg gcgaaaattt tctattctgt gccatttatg ttccacctga      1860
     gaagagatct gatgtcaatc ttatcaatga gcacattgcg accatcgatg agttgcgagg      1920
     tacgaagtgc gcagatcaca caaccgttgt ctgtggcgac tataatcaat cccatgtcca      1980
     atggtcgctg attggcagca tagctcgccc cacgagcccc ctgactgccg catccaccat      2040
     ggctttggtc gatggaatgg attatctcaa cctgtgtcaa actaatctgg tacataattg      2100
     ctttgggcgg attctagacc tcgtcttttg ctcgtcgcag agatccgtcg ctgtggatgt      2160
     tgctgcatct gctctggcgc taccggttga ttcgcatcat cctcccctag tctgccactt      2220
     tcccatcttc aagcgacctc aggaacgcag aggcaactcg gcgaacccag cgctgcgtct      2280
     gctaaatttc cgcaaaatcg atttcgccgc tatgacgaca ttcttgctca gcgtagattg      2340
     gagtctatgt ttgacaaacc ttggcgttga tgagatggct aacacgtttt gcagcattat      2400
     tcggaactgg atgaatcaac acgtgcctac agtaaagccc cgcgtgtccc ccgcttggag      2460
     caacagccgt ctgaggcaaa tgaaacgact taaaaatgca tgtcagcgag cgctgcgccg      2520
     tcgtcgctct gttgtcaaca agatgaagtt taggagatca agcgatgcat acaggaaact      2580
     caactctaca ctgtacaagt cgtacgtgtt gcgtgtccag acgaaccttc ggcgtaatcc      2640
     ccgcgggttt tggagctttg tgaacgcgaa aagaaagagc aaagacatcc ctgacagtgt      2700
     ctttcttgac caacacgagt ccggatctcc agagatgtcc tgtgatctgt ttgcacagca      2760
     tttcaaaagt gtttttgctg caggttgcgc cactgacgag gaagctgcgg ttgctgcaaa      2820
     caacgttccc gagaaccttc ttgacctttc aacattcgac gtgtcggctg atatggtaaa      2880
     gcaagcgcta gcaaagctaa agtcgtcctt ctccccaggg ccagatggta tcccttctgt      2940
     ggtctaccgc cgatgtgctg atgcgttggt tgctcctctt tcggtcattt tcaacaagtc      3000
     attttcccag caaacgttcc cgtccacttg gaagcagtca ttcatcgtgc ctgtgcacaa      3060
     gagtggtgac aaaagaaacg tcagaaacta tcgaggagtg acgaacctgt ccgcagcatc      3120
     caaattgttc gagatcatcg tcagcaaagt gatccagcgt caagctatgc gctacctgtc      3180
     tgatgatcag catggtttca tcccgaagcg ttcggtgacc acgaatcttt tggaattcac      3240
     ctcaacatgc atcggccact tggagaacaa agcgcaagtc gacgtgatat acaccgatct      3300
     caaggccgct tttgaccgca tcgaccacaa cgtcctgctt cgtaagcttt ctcgcctagg      3360
     cctgtctgta caactggtaa actggctacg gtcttacttg gtgggtcgtt cgcttcgggt      3420
     tcgactaggg acgagtgttt cagctgtttt tgtgaacaat tcgggagtac cgcaaggaag      3480
     caatttggga ccacttctat ttatcctgtt tttcaatgac gtgctgtttt tgctaggacc      3540
     aggttgcgcc cttgtgtacg ctgatgacct gaagctattc ctgccgatca aagcaacaga      3600
     tgattgctgt cgactgcaag ctcttctgga cattttcgtc tcctggtgtc ggcgcaacaa      3660
     gctcgtcgta aacatttcca agtgcttggt catgtcattc acacgtagca aacggatgat      3720
     ctcgtttgac tacagcatcg atggagtcgt cctgcaaaag gttgaccaag ttagagatct      3780
     tggggttctg atggatccta agctgacatt tgacctccaa cgagtttcgg tgattgccaa      3840
     ggccaatcgg cagcttggat tcatctccaa aatttcgaag gactttcgag acccgtactg      3900
     ttggaaatcc ctgtactgtt ccctcgttcg gcccatcctt gagtacgctg ccattgtgtg      3960
     gttgccctac cagctaacgt ggattttgcg aatcgaacgt gtgcagaagc ggttcatccg      4020
     gagagccctg agaagcttgc cctggaggga tccagttaat ttgcctccgt atccagctcg      4080
     atgtcggctg ctgaacatcc aaccccttca gtccaggcgt acaacgcagc aggcaacttt      4140
     tgttgctaag ttgttgaatg gagaagtcga ctctccaaat ctgctctctc ttatcaactt      4200
     ccgcacaccg caaagaacgc ttcgtgactc aacgctacta gcccgcagat tccaccgtac      4260
     agcctatggt ttcaacgaac cagtttccag catgatccga gccttcacag cagtagaaga      4320
     tttgtttgaa tttggtgaat cgtctgtccg ttttcgtgat aaaatcaacc gtactcaaac      4380
     ttttattcat taagacaaac attgtcagat gaatgtaaat aaacaattaa acaattaaac      4440
     aat                                                                    4443
//
ID   CR1-3_DAn   repbase;    DNA;    INV; 4449 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4449
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 376-376 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           480..1448
FT                 /product="CR1-3_DAn_1p"
FT                 /translation="MEYNVVCSLKSCNKPISASQASIYCWLCESVSHAKCA
FT                 GLTASVSDAISRRVGLHYCCSGCRAVQDEMRSFMRQTKSGFKDLIVGFRKI
FT                 NDQLSALDVQFNSLQLLNESPKRKKSATREVAAPVIAEQLDPPAIMQPLIS
FT                 LATPRAGTVNEKLAPEFTVAEQNLSALSSMASLQVIPRNTLELTPIASTRN
FT                 GNPPPGPPERTDAAVLPTVAPKPLQVIPPVRQIFVSRLAPDTSEIDISAYI
FT                 KAKTKAVIRVEDIRKFKYSYSRRMSSFMIRVPVPMFVTICSPGFWPEDIFV
FT                 QEHQPSKVKKKNSKPAGVKLPTSVQSDSSKN"
FT   CDS           1376..4300
FT                 /product="CR1-3_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="GKEKKLEACWSQAPNICPIRLFKKLTRSINLTYQNCR
FT                 GLRSKLPRLYSDSLSFASHIIVFTETWLKPEIFCSEVFPSRYTTFRRDRPL
FT                 RRGGGVLISIDSNFVSEEVKLPEFGDFEFICVKVILSAQSLFITCSYIPPS
FT                 SEPPTYWHHLSAIQAVTNLMSDIDLLIVLGDFNLPELNWSITENLTFLSLS
FT                 THHDFTAGIFDLSLGQINHVRNSLGRLLDLCFVSDPDSTTLSRALPLSTPE
FT                 DPYHPTLEVSIETNSGVNQKTSCVSKKIRCFRKADFRKLNLLIDTFDWSDI
FT                 LACTDINIILDKFYLTLNSFFDLSVPWKYPSATNNPPWFTRCLTKLKTYKD
FT                 RLLNKYKRTCSSIDFSRYLIARLNFSVHNAECYKNYIRRCRIQFTQDPKQF
FT                 YNFVNTKRKHVSFPSLLTYQNLSATSDQAIADLFAKFFQTTYLPPNTSDQP
FT                 YAYNIQPTNSIFVPFLSENNILLDLQKVKPVYSPGPDGVPACVLKYCARAL
FT                 CKPLQKLFNLSLESSIFPFKWKESFIIPLHKKGKKSDAANYRGISKLSAIP
FT                 KLFEKLITPHLQHLCSSIISPCQHGFIKRRSTTTNLLELTSFVLDGFQKGL
FT                 QTDVIYTDFSKAFDSVNHSLLLSKLNLLGFSTDLITWISSYLNGRTQRVLF
FT                 KNQYSRLVRATSGVPQGSHLGPLLFTLFINDLPPSITNALVLMYADDVKLC
FT                 LQYKFPSAQNRLQSDLDNFQKWCLANDLVLNGSKCKLMSFYRTSPHQASYN
FT                 LSGIALEKLTQVNDLGVLLDIKLKFSDHISSMVNKAKGVVGFIKRWAKEFN
FT                 DPYITKSLFISLVRPILEYGSCVWCPQYGVHQDRIESVQKNFLLFALRGLN
FT                 WDANLHLPSYNSRLLLINLPSLKNRRTMLGVVFLXNLINGDVDSQHLLTRL
FT                 QFNVPNRRTRNFSPLFLSHCRSTYAQHDPIRILCSNYNGLYNIISLSSQSN
FT                 LKTSILNYLQEHTNSSSFSL"
XX
SQ   Sequence 4449 BP; 1267 A; 1008 C; 767 G; 1404 T; 3 other;
     actctcttcc ttcacttcat agcgaacggt cgtgattatt ttttgcgctt gcgataaatt        60
     ctatttttgc caaacgcggg tttgaaacct taatttaaac actttgtttt cattactaat       120
     attgtgtctt aatattaaag ttatacccgt atcgctacgc gcttgtgcag tgccatattt       180
     gggtgagcat ttaataaaat taaaaagtcg caatccaaat atagctctgc ttcctttttt       240
     actctctgcc tttttaattt ttgcagttaa ttctgctctt atctttttgc gcgcatttcg       300
     ttacacttgc gctctcccgt agctctctct ttactaacac tctcctctac ctactctttt       360
     actaacctta gttggtacag tggttgaagg cttatttgtt taaaataaaa aacaaaaaat       420
     aatagaatat ttaaaaatta taaattaatt tttgctaatt tgctaattaa ttttttaaaa       480
     tggaatacaa tgttgtctgc tctttaaaat cgtgcaataa gccgatatct gcgtcccagg       540
     ccagcatcta ttgttggcta tgcgaaagtg tctcacatgc caaatgtgct ggccttactg       600
     catctgtctc ggatgccata tcccgccgtg ttggcctcca ttattgctgc agtgggtgcc       660
     gagctgtcca agatgaaatg agatcattca tgcgacagac caagagtggg tttaaagatt       720
     tgatcgttgg tttccgaaaa atcaacgatc aactcagtgc gctggatgtt caattcaata       780
     gccttcagct gttgaatgaa tctcctaagc ggaaaaaatc tgctactagg gaagttgcag       840
     ctccagtaat cgcggaacag ctggatcctc ccgcaataat gcagccgctc atttcccttg       900
     ctactccaag agcagggacg gtaaatgaaa agttagcacc cgaatttacc gtagcagagc       960
     aaaatttgtc tgctttgtcc tccatggcat cactccaagt gattcccagg aatacccttg      1020
     aattaacccc catagcttcc actagaaatg gtaacccgcc gcccggaccc ccggaacgga      1080
     ctgatgccgc ggtattaccg accgtggcac caaaaccatt acaggtaata ccacctgtta      1140
     gacaaatatt tgtctcacgg ctagcccccg atacctcgga gattgatatc tcggcttata      1200
     tcaaagccaa aaccaaggcc gttattagag tggaagacat taggaaattt aaatactcct      1260
     actcgaggcg catgtcatcc ttcatgatac gtgtgccagt gccgatgttt gtgacaatat      1320
     gttcgcctgg cttctggcca gaggacatat ttgtacaaga gcatcagccg agtaaggtaa      1380
     agaaaaaaaa ctcgaagcct gctggagtca agctcccaac atctgtccaa tccgactctt      1440
     caaaaaacta acacgttcta tcaatcttac ctatcagaac tgtcggggcc tacgtagcaa      1500
     gctccctaga ctttattctg atagtctttc ctttgcgtcc catattatag tctttactga      1560
     aacttggtta aagccggaga tcttttgctc cgaagttttt ccaagtaggt acaccacttt      1620
     tagacgtgac cgacctctgc gaagaggagg aggagtctta atttctattg actccaattt      1680
     cgtttctgaa gaggtaaagt taccagagtt tggtgatttc gaatttattt gcgttaaagt      1740
     catattgtct gctcaatcat tgtttattac atgttcttac attccaccat cttccgagcc      1800
     gcccacatac tggcatcact tgtcggctat acaggctgtt accaatctta tgtcagatat      1860
     tgaccttctg atagttcttg gcgactttaa tttaccagaa ctcaattggt caattactga      1920
     aaatttaact ttcttatcac tttccaccca tcacgatttc acggcgggca tctttgactt      1980
     gtccctaggc cagatcaacc atgttagaaa ttcgttaggt cggcttcttg acttatgttt      2040
     tgtatctgat ccagatagta ccacactttc cagagcgttg cccctctcaa cccctgaaga      2100
     tccataccac ccaacgcttg aagtttcaat tgaaaccaat tctggtgtca atcagaagac      2160
     ttcctgcgta tcaaagaaga ttcgttgttt tcgtaaggct gattttcgta aacttaattt      2220
     attaattgat acttttgact ggtccgatat tctggcatgc actgatataa atatcatcct      2280
     agataaattt tatttgacat taaattcatt ttttgactta agcgtgccgt ggaaatatcc      2340
     gtccgctaca aataatccac cttggtttac aaggtgccta acwaaattaa aaacatataa      2400
     agacaggctt ttaaataaat ataaaagaac ctgtagcagc atagatttct caagatactt      2460
     aatagctcgg ctaaatttct ccgtgcataa cgccgaatgt tataaaaatt atattcgccg      2520
     ctgtcggatt cagttcactc aggatccaaa gcagttttat aactttgtaa acacgaagcg      2580
     taaacatgta tcttttcctt ccctacttac gtatcaaaat ttatcagcga cttcggatca      2640
     ggccattgcg gatttattcg caaaattttt ccaaacaact tatttacctc ctaacacttc      2700
     agatcagcca tacgcttaca acattcaacc aactaatagt atatttgttc catttctttc      2760
     tgaaaacaat atactattgg atcttcaaaa ggtaaaacca gtttattcgc caggccccga      2820
     cggagtacca gcctgtgtgc taaaatactg tgctagggct ctgtgcaaac ctcttcaaaa      2880
     actatttaac ttatctttgg aatcttcgat tttccccttt aaatggaagg aatctttcat      2940
     aattcctctg cacaaaaagg ggaaaaaatc cgatgctgcc aactacagag gcatctcaaa      3000
     attgtcagcg attccaaagt tattcgaaaa attaataact cctcatttgc aacacctatg      3060
     ctcatcaata atttctccat gtcagcatgg tttcattaag cgtcgctcaa ccaccactaa      3120
     tttattggag ttgacatcct ttgttttaga tggcttccaa aagggacttc aaactgatgt      3180
     tatttacaca gactttagta aagcatttga ttcagttaat cactcactct tgttgagtaa      3240
     actaaatctt ttgggattct caaccgacct cattacgtgg atctccagct atttaaatgg      3300
     aagaacacag agagtcttat ttaaaaatca atactcccgc ttagtccgtg ccacatctgg      3360
     tgtccctcaa ggaagccatc ttggcccatt actattcact ctttttataa atgacttgcc      3420
     cccatccata acgaacgcgc tggtactaat gtacgcagac gatgttaagc tttgtctsca      3480
     atataagttc ccgtctgccc aaaacagact ccagtcggat cttgacaatt ttcaaaaatg      3540
     gtgtttagct aatgacttag tacttaacgg atcaaaatgc aaacttatgt ctttttatcg      3600
     tactagtcct caccaggctt cgtacaatct ctctgggatt gccttagaaa aattaactca      3660
     ggttaatgat cttggtgtcc tcttagacat aaaacttaaa ttttccgacc atatttcttc      3720
     aatggttaat aaggctaaag gtgttgtcgg ttttattaaa agatgggcaa aggaatttaa      3780
     cgacccttac attactaaaa gcttatttat atccttggtc cgcccgatac tggagtacgg      3840
     ttcatgtgtc tggtgtcccc aatacggtgt tcatcaagac cgcatagaat ccgtacaaaa      3900
     aaacttctta ttatttgctc ttaggggact taactgggac gcaaatcttc acctaccttc      3960
     gtataatagt agactcctac taataaactt accctcctta aaaaaccgta gaacaatgct      4020
     gggtgtcgtt ttcctacasa accttattaa tggtgatgta gatagccagc acttactaac      4080
     acgcttacag tttaacgttc cgaatagaag gaccagaaac tttagtcctt tattcttaag      4140
     ccattgtaga tcgacatatg cacagcatga tcccattagg attttatgtt cgaactacaa      4200
     tggtctgtat aatattattt ctctttcctc ccagtcaaat ttgaaaacct ccattttaaa      4260
     ttacctacaa gaacatacta attcttcctc gttttcttta taatccttct atttaaactt      4320
     atatactata ctcattatac taactcgaat ttattcccgc gattcgagcc gtacgttatg      4380
     cggcaggcgc ccctcggtcg gttgggcggg aggtgggctg tacgtatgca gtgggaaccg      4440
     cgcgaaaaa                                                              4449
//
ID   CR1-3_DAzt  repbase;    DNA;    INV; 4904 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4904
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 873-873 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           845..1948
FT                 /product="CR1-3_DAzt_1p"
FT                 /note="RNA recognition motif."
FT                 /translation="MSSCCAKNCDRSVSTRQTYIYCWLCDNTAHTNCAELG
FT                 HIGGRVGDLIKTRCGLNWTCWDCRAIENDMRVFMRQTHLEFDALNAGFRLL
FT                 QDKFRLTEAHFKTLKILTESPKRKKGNKYLANTNNDFSLPAPEPPVPLARS
FT                 PPVTGMEPVANDAIASASAPRPVAPPAPRAAPMPVASRPPPAEADAVXMMA
FT                 VEAPSNLXSIAIASTSTMPIVLPNSTAACAPRVEVLAXEDAANATATPRPI
FT                 RGMATPSGSRSGLEISGVVPRKAIFVSRLNPEATTEDVKHHLCSKLSARLE
FT                 DIIVTKFSFKHKRNISSFKIFVPDSYLDRSLDPSIWPKHTIMHEFVRKVSN
FT                 LNVTGPANSSSNLSPNVSCPIISKN"
FT   CDS           1927..4785
FT                 /product="CR1-3_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LPYHFKKLTNYFSVHYQNVRSLLGKLRQLHTDSASYD
FT                 FDAISFSETWLNSTVHDHEIFGXNFIIYRMDRASYAGGVLIAVKTDFSSEL
FT                 FPFNNIHGIEFIAVKVRVGMSFIYLTCSYIPPKSDADVYSKHLSAIHSVVS
FT                 SLGCADQIVVMGDFNLPLLYWLPCDDANQLLPNTHNDFISELTDVSLAQIN
FT                 SIKNNRNRLLDLIFVMDASLSTVARVSPLALPEDLYHPTLSITLECTTSSC
FT                 VNITLTPHRMKCFRKTDFDNLNIHLSNVDWSILFSLPNIDVAVNSFYKILN
FT                 SALNTYVPEIXVPLSSKPPWFSRNLSYLKNRKSRLFKKYQKTGSLLVFVQY
FT                 SSARSQFLSTNSLCYNXYLSSCSRNFRNDPKKFFSFVNSKRKSNAFPPSLH
FT                 YLNNSESSAAGIANLFATFFQSSYSSHIYNSSTPYPYHLPHSNSIFQPTFE
FT                 ERVVLDGLQSLKISFSAGPDKVPSCILKHCAQSLCQPLTFLYNLSLEQSCL
FT                 PVIWNESYIIPLHKKGSRSNIENYRGIAKLSAIPKLLEFLVTRQLQHLCSS
FT                 LISPSQHGFIKHRSTTTNLLEFSSIINRGFQSGLQTDVIFTDFSKAFDSVN
FT                 HTLLIQKLSLLGFPSNLLRWISSYLSNRTQRVLFTNVLSEIVNVTSGVPQG
FT                 SHLGPLLFILFVNDLPQVVTFSHTLMYADDVKICLPYSDWYLHTHLQLDLN
FT                 ELLLWCSSNLLFLNLSKCKLMTFYRRAPHFVSYSLGNHVLDRISSSNDLGV
FT                 LFDHKLCFNSHIAATANKAKGVLAFIKRWSKEFEDPYVTKQLYISLVRPIL
FT                 EYCSCVWSPQYKEQQVILESVQKQFLIFALRNLHWDSGRTLPPYRSRLKLI
FT                 DLPSLHHRRICNGVMFVHKLLLGMVDSQSLLSQIDFTVPSRSTRSFRPIRL
FT                 PLFRSNYAQHEPFRVLCYNYNSLYQLISPELTLKHIAFSIYNYLNSANL"
XX
SQ   Sequence 4904 BP; 1229 A; 1145 C; 854 G; 1661 T; 15 other;
     acagatagga acacttttga gagagcggtc actgcaaaac ggtctttgaa agaccactac        60
     gcaataagtg tcttcaaaaa gggttgtttc ttgctgtgtg cgagaaagag aaaagattat       120
     atgtgcaata catacatgtg cataaatgtt atgtaggaat acacagacgc acgcatacat       180
     acaaaaggac tgttttgctg aaagtgtccg accaaagtag tccctgagag agcaaaccaa       240
     agagaacaca aaaaaaagtg ttttggtcaa tcatatcgat atatcgttgc ggacggtcgt       300
     gttctatttc gctcttgctt gaatatttgt taaaaattgt aaatcttctg ttaaaggaaa       360
     gtaatttgtg ttttttacct tgttctggtg ttcctwaccg atcgtgcaac gtgttcgatt       420
     ttagtgcaca cgcattacgc ttacttttgt gtatttatat tcaacattca attcctattg       480
     tgcattctta acttctctgc actttcttaa tcgcagctgt tttgttgttg tctattctag       540
     tgcggtscac ttgctctctc tgaaccgctc tctgttttat cttctatcag cttatctgtt       600
     ttcatttcca acacacacgc actgcgttag ccgccgctct gtgcttgtct ctctgtgktt       660
     ctatcgttct ctctgttctc tccgtttcac ttgccgttgt ttgtgactgt ttttgttttt       720
     gttcgtgctt gcgcgcgcaa ttgttawcac aatctaaagt tactatcttt gccccacacc       780
     gacttttatt ttacctttct ttatttcttt tatttttatt tttcataatt ttcttaaaca       840
     caatatgagt tcttgctgcg ctaagaactg tgaccgttcg gtctctacac ggcaaacgta       900
     tatctactgt tggttgtgtg acaacacggc tcataccaac tgtgctgaat tggggcacat       960
     cggaggtcgc gtgggagatc ttatcaagac tcgctgcggt ctcaactgga cctgttggga      1020
     ctgcagggct attgaaaacg acatgcgtgt ctttatgaga cagacgcatc ttgaattcga      1080
     tgccctaaac gctggattcc gtttgcttca agataagttt cggttgacgg aggctcactt      1140
     caaaacactt aaaattttga ctgagtcacc gaagaggaag aagggtaata agtatttagc      1200
     caatacaaat aatgattttt ctcttccagc ccctgaacca cctgtacctc ttgctcggtc      1260
     accgcctgtt actggtatgg aacctgtagc caatgatgca attgcatctg cctctgcgcc      1320
     caggcctgtc gcaccacctg cacctcgcgc tgcacccatg cctgtcgcct ctaggccccc      1380
     acccgctgaa gctgacgcgg ttgkcatgat ggcggttgag gccccttcaa acttggmatc      1440
     catcgctatc gcctcaacca gcactatgcc aatcgtgttg ccgaacagca ccgctgcgtg      1500
     tgctcccagg gtggaagtgc ttgcggmtga ggatgccgcc aatgctactg ccacaccgag      1560
     acctattcgg ggtatggcta caccttctgg ctctcgatcg gggcttgaaa ttagtggagt      1620
     ggttcctcga aaagcaattt ttgtttcccg actcaatcct gaggccacta cggaggatgt      1680
     taagcatcat ctctgttcaa aacttagcgc tcgccttgag gatattattg tgaccaagtt      1740
     ttcctttaaa cataagcgta atatttcctc ttttaaaatt tttgttcctg attcttacct      1800
     tgatagatct cttgaccctt ctatttggcc taagcataca attatgcatg agttcgtgcg      1860
     taaagtatcg aatcttaatg ttactggccc tgccaattct agttctaatc tgagtcctaa      1920
     tgttagctgc cctatcattt caaaaaacta actaactatt tttccgttca ctatcagaat      1980
     gtacgcagtc ttttaggcaa actgcgtcaa ctacatacgg atagtgcctc ttacgatttc      2040
     gatgctatca gtttttctga aacatggctc aactccactg ttcacgatca tgaaattttt      2100
     ggtcamaatt tcatcattta tcgaatggat cgtgcatctt atgcaggtgg agttctgatt      2160
     gcagtcaaaa ctgacttctc atcggagtta ttccctttca acaatatcca cgggattgag      2220
     ttcattgcag tcaaagtccg tgttggcatg tcttttatct atctaacctg ctcatatatt      2280
     cctcccaaat ctgatgctga tgtttactca aaacaccttt ctgctatcca ttctgttgtg      2340
     tcttccttag gttgtgccga tcagattgtg gtcatgggtg attttaattt acctcttctt      2400
     tattggctgc cctgtgatga cgctaaccaa ttgcttccta atactcataa cgattttatc      2460
     agtgagctaa cggatgtttc ccttgcccaa attaattcca ttaaaaataa taggaacaga      2520
     cttctcgacc ttattttcgt tatggatgct tctctaagta cagttgccag agtctcccca      2580
     ctagcacttc ctgaagacct ataccatcct acgctatcta taactttaga gtgtaccact      2640
     tctagttgtg ttaacattac cttgactcct caccggatga agtgttttcg caaaactgat      2700
     ttcgacaatt taaacattca cctctcgaat gtcgattggt ccattctttt ttccttacct      2760
     aatattgacg tagcagtcaa ctcattctat aaaattttaa actctgccct taatacttat      2820
     gttccggaga ttwctgtacc attatcgtcc aagcctccct ggttctctag gaatttatca      2880
     tacttaaaga ataggaaatc tagacttttt aaaaagtacc agaaaactgg ctccttgctt      2940
     gtctttgtac aatattcttc cgcccgctct caattcctat caactaatag tctgtgctac      3000
     aatckttacc tctcttcttg tagtagaaac ttccgcaatg atcctaaaaa attcttttct      3060
     tttgtcaact ctaaacgtaa gtccaatgca tttcctccgt cccttcatta tctaaacaat      3120
     tccgaatctt ctgctgctgg catcgcaaac ttattcgcaa cctttttcca gtcgtcttac      3180
     tcttctcata tttataactc atccactccg tatccctacc atttgcctca ctctaatagc      3240
     atttttcaac ccacttttga ggaacgcgtt gtgctcgacg gcttgcagtc tttgaaaatt      3300
     tcattttctg caggtcctga taaagtgcct agttgcattt taaaacattg tgcccagtct      3360
     ctatgccaac ccttaacctt tctttacaat ctatccttgg aacagtcttg tctccccgtw      3420
     atttggaatg agtcctacat aattccgctg cacaagaaag gctccagatc caacatagag      3480
     aattaccgag gcattgcaaa gctctctgcc attcctaagc tccttgaatt cctggttacm      3540
     cggcaattgc aacatctctg ttctagcttg atatctcctt cacaacatgg ttttattaaa      3600
     catcggtcaa caactaccaa tctgctcgag ttttcctcca taatcaaccg tggatttcag      3660
     agcggwttgc aaactgacgt tatttttacg gattttagca aggcattcga ttcggttaac      3720
     cataccctat taattcagaa gctgtcctta ttaggtttcc ctagtaatct tctacgttgg      3780
     atttcgtcgt atctttctaa tcgtacacaa cgggtcttat ttactaatgt tttatcagag      3840
     atcgttaacg tcacatctgg tgtcccacaa ggtagtcatt tgggtccgct cctcttcatt      3900
     ttatttgtga atgaccttcc ccaagttgta acattctctc atacattaat gtatgcggat      3960
     gacgttaaaa tctgtctgcc ctactccgac tggtacttgc acacacacct tcagctagac      4020
     ctaaatgaat tgctattgtg gtgttcaagt aatctcctat ttttgaacct ctcaaaatgt      4080
     aagcttatga cattctaccg tcgtgctcca catttcgtat cctattctct tggcaatcat      4140
     gtattggatc gaatttcgag ttcaaatgat cttggagtat tatttgacca taaactgtgt      4200
     tttaatagtc atatagctgc gacagctaat aaagctaaag gtgttctagc atttatcaag      4260
     cgttggtcca aggagtttga agacccgtat gtgaccaaac aattgtacat ttcgttagtg      4320
     cgcccgatat tggagtactg ttcttgtgtg tggagcccac agtataagga acagcaagta      4380
     attcttgaat cwgttcaaaa acaattttta attttcgctc ttcgtaattt acattgggac      4440
     tctggtagaa ccctgccacc ttaccgatct aggctaaaac taattgacct gccttcgtta      4500
     caccatcgca gaatatgcaa tggtgtaatg ttcgtgcaca agctccttct cgggatggtg      4560
     gactcccaat ctctcttgag tcagattgac tttacggttc cctctcgttc tactcgttct      4620
     tttagaccta tcagattacc cttatttagg tctaactatg cccagcatga acctttcagg      4680
     gttttatgct ataactataa ttccctctat cagctcatat cccctgaact aacccttaaa      4740
     catatagcat ttagtattta caattacctg aactctgcta acctgtaatc ttaattttwa      4800
     attttgttat tgttttatct ttagttctct ccctaattta taatttatat agcattatta      4860
     gcagataatt gttaattaat taaataaata aataaataaa taaa                       4904
//
ID   CR1-3_DBi   repbase;    DNA;    INV; 5439 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5439
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 923-923 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1753..2592,2583..3332,3287..3505,3435..5051)
FT                 /product="CR1-3_DBi_1p"
FT                 /translation="MKAFMRQTRKALTEFRKQLTSSFEVFSIMETQFLDCK
FT                 LLNESPKRKIANNNKNSLQIPSPCIAAVGIPSPISACLNSILAVNNSAGPG
FT                 TSGLQSSFAFNNTSPGSEPGASGLQPNQNTGTTAEGSSTPQQLAPGPGSLH
FT                 INPDHATTIAPAALPSSQPAANQPLSAIPLSGVAPRSNAADLPLRGIAPNR
FT                 SVFVSRLNPEATADCVKSYLCQKLGAQPNSISVFKFNFKQPRNISSFKITL
FT                 PESMFSNALDPTIWPEHTIMHEYIRKGASQDPNSVDAKNCKKLNRSISVAY
FT                 QNVRSLLGKLKRVYSNSTLLDFDIIAITETWLNTTVYDQEIFVNKFAIYRL
FT                 DRPTRGGGVLIAVLNSHSSELIPYDNMHSIEFIAVKVTTDKCNVFLTCSYI
FT                 PPGSDPAIYLHHLSAISAVSLAVGDADQLIVLGDFNLPHLSWLPNSDSNIL
FT                 FPENQHEFIDGLTNLSLGQVNSIKNSRERILDLIFVSDVSVATVSRCDPVS
FT                 TPEDSYHPALYLSVHINFETTNQSASQRGNTIRDNYESICLTTREHYTGLN
FT                 SHFDRLNWSTLYSFTDLDSAVLWFNESVCSALDTFVPSYRWKLIKASLVLQ
FT                 AFVLHIPLSQVTVGNSLKPPWFSRHLSYIKNTKSLLKDIKNPRFFYAEYIA
FT                 ECRQNIRSDPKKFYSFVNSKRKSNVFPPCLHLGNLSESSDINISNLFATFF
FT                 QSTYSLPHINNIHIPPFKISDVLNGMLTIDESFSAGPDKIPSCIIKQCAAS
FT                 LCGPITFLFNLSLQLSFFPSVWKTSFLIPLHKKGSKTDVGNYRGIAKLSAI
FT                 PKLFERLVTCQIQHMCSSIISTSQHGFVKKRSPSTNLLEFSRLIHCSFLQK
FT                 KQADVIFTDFSKAFDSVNHSLLIYKLSLIGFPPYLLDWISSYLSNRSQRVL
FT                 FKNVVSSLVNVTSGVPQATSHLGPLLFILFINDLPQVMSYCTTFMYSDDVK
FT                 ICMSFSNLSSHLLIQSDLNKFQAWASTKLLSLNYSKCKTMSFSRTTFHTTS
FT                 YTLGNSLLERVVKINDLGVLFDQKLCFNSHISVMVNKATGVLAFIKRWAKE
FT                 FNDPYTTKSLYVSLVRPIMEYCSEVWNPQYVYQQNLIESVQKQFLLFALRN
FT                 LNWDPDRHLPPHLSRLKLIDLNTLKHREFNCKIF"
XX
SQ   Sequence 5439 BP; 1545 A; 1237 C; 940 G; 1711 T; 6 other;
     aggcaatcga tttgagggga aaaaatcact ctacctcaaa gccacagaaa aataaaacca        60
     tacatggaac tgccaaaatt cgacggtamc tacgtcgagt tcaaaattat tactactatt       120
     caatgtcaaa aaaatcaata attttatatc cgctttgaaa aggaasagta aaggcttacc       180
     aaatcamgtc gaccatgaat agggggtatg taatccgtaa tgcaagcgcc atccgccgca       240
     gtgttacgat ctctcttcga cgcccttact agtttttacg gatttcttct ctcggcaacg       300
     aaaagttgga aaaagtcatg tccaggttag atcgaaaaac gcggtcgcga tgggaagaat       360
     aaaccagtta aaattctagt cagatatgga aatattcttg ggaagcgatt aataaacgtt       420
     atcaacactt agtggctgag gattccacga caggaaggag agcttccaag cgggagcagc       480
     caaacaagcc atgctttaga aagaaggcat tcgtagtttc gtgacctgmc gaagactccc       540
     aattgaaatk tcaattttgt aagtcaaagt tctatcaatt gccaaactgt ttacatttcg       600
     cccaaagtct taagaaagga cgaaatttca acagatgtaa tatatgcaaa acatagaccg       660
     cattaaacat atattgtttc ggttttccct tgcccggttt cgccttttgt ttctaagaat       720
     agatcgggag ttacaaaatt acgatagtat tgaaatattg cttacatagt cattattgct       780
     tttcggcgag ccgagcagct cgattgctca agaaatatat aaacttaatt atttatttat       840
     aatgacaatt attatttata taaaaattat acagtgtatt ggccagccat tccattgaac       900
     aaacgtattg ccgttgtgct ctatccttaa attacgaact ataggcaagt caaacagtca       960
     tttcgcaacg atactgaccg gttgtgtttt atttgagctc ttgaaattac ctttcaatcg      1020
     cggttacacc gaacgtatat aatcttaaaa ttggagaata actttctcaa cccccgctta      1080
     acacttcacg caccgtatat aaacattaca tcgcgccaat taacatattt aattgaatcg      1140
     caattcatct gctgttgcca caagkgcttc tgttccctat cgccgtcgcg tctgttcttt      1200
     acacccgctc gccaattgct ctctcaaggc cacggtcctc tctccgtgca cttcactttg      1260
     agcgcttcgc ctctctcatc gcctggatat tcgaattggc tctccgaatc gacgactctc      1320
     ccatcaagta ttctaacggt cctctctccg tttacttcga gtgggtcgcc tctctcatcg      1380
     ccttgcttgc tgcggatctt cgaattggct ctccgaatcg tcgcctctcc catcgccgta      1440
     tctgccacta cctggtgttc tgcgtgtctc tttaatctcc cacggcctgc tcttctgcaa      1500
     gattctctta actgcctctt aactgcatag tgtccaaaca atcactaaaa tgagtgtcgt      1560
     catctgttcc gcaaagaaat gcgagttcaa ttgtgttatc attggagata attatttgtc      1620
     ttgttggctt tgcgacaatt gcgctcatgt aaaatgcgca ggaatgggtc aaaacggccg      1680
     tgtagttgat ctgatctcga agagaggcgg cttaacttgg ttctgcccta cctgcctcgt      1740
     acttactcgg agatgaaagc cttcatgagg caaacaagga aggcgcttac agaatttcgt      1800
     aaacagctga ccagcagctt tgaagtcttc tcaattatgg agactcaatt tctcgactgt      1860
     aaactgctaa atgaatcacc aaagcgaaag attgcgaaca ataataaaaa ttcgctgcaa      1920
     attccatctc cctgcattgc tgcagttggt attccgtcac ctattagtgc gtgcctgaat      1980
     tcaatcttgg ctgtcaacaa ctcagctgga ccgggcacat cgggattgca gtctagcttc      2040
     gcctttaaca acacctcacc tggatctgag cctggagcat ctggattgca gcctaaccaa      2100
     aataccggta cgactgcaga aggctcttca actcctcaac agttagcacc tggccctggc      2160
     tcactacata taaacccaga tcatgctact acaatcgcac cggccgcgct tccttcgagc      2220
     caaccggctg ctaatcaacc cctcagtgct atcccactat ctggcgtggc tcccagatcc      2280
     aatgcggcgg atcttcctct cagaggcatt gcacctaata ggtcggtctt tgtttctcgt      2340
     ctcaatccgg aagccactgc tgattgtgtt aaaagctacc tgtgccaaaa attgggtgca      2400
     caacctaata gtataagtgt ctttaaattt aatttcaaac aaccacgtaa catctcttct      2460
     tttaaaatta ctcttccaga atctatgttt tctaacgctt tagatcccac aatttggccg      2520
     gagcacacta taatgcacga atacatccgc aaaggcgcat ctcaggatcc caattctgtt      2580
     gatgcaaaaa actaaatcgc tcaatatctg ttgcttatca gaatgttcgt agtctattgg      2640
     ggaaactaaa aagagtttac tctaacagca ccttgctgga ttttgacatt attgctataa      2700
     ctgaaacctg gctcaacaca actgtttatg atcaagaaat attcgttaac aagtttgcca      2760
     tttacagatt agaccgccca actcgtggcg gtggcgttct aattgcggta ctaaactctc      2820
     attcttctga acttattcct tacgataata tgcacagcat tgaatttata gcagttaaag      2880
     ttaccaccga taaatgtaat gtatttctta cttgctccta cataccccct ggctctgatc      2940
     ctgctattta tcttcatcac ctttcagcta tttctgccgt ttctttagct gttggtgacg      3000
     ccgatcaact tattgtcctg ggtgatttta acttacctca tctttcatgg cttcctaact      3060
     cagactctaa tattttattc cctgaaaatc aacatgaatt tatagatggg ttaactaatt      3120
     tgtcacttgg acaagttaat tccataaaaa attctagaga aaggatcctt gacctaattt      3180
     ttgttagcga tgtgtctgtg gcaaccgttt ccagatgcga tcctgtgtcc acaccggaag      3240
     attcgtacca tcctgctcta tatctaagcg ttcatataaa ttttgaaact acgaatcaat      3300
     ctgcctcaca acgcgggaac actatacggg attaaattcc cactttgacc gcctaaactg      3360
     gtcgacctta tactcattca ctgaccttga tagtgcagtt ctttggttta atgaatcggt      3420
     ttgctctgcc ttagatacct ttgtcccaag ttaccgttgg aaactcatta aagcctcctt      3480
     ggttctccag gcatttgtcc tacattaaaa acacaaaatc gcttttaaaa gatataaaaa      3540
     atccgcgctt cttttatgct gagtatattg ctgaatgtag acaaaatatc agatctgacc      3600
     ctaaaaaatt ctattccttt gtaaattcta aaagaaaatc taatgtattt ccgccatgtc      3660
     tccatttggg taatctttca gaatcttccg atattaacat ttctaacctc tttgctactt      3720
     tctttcaatc tacatactct ttgccccaca ttaataatat ccacatccca ccttttaaaa      3780
     tcagtgacgt tctaaatggc atgttgacta ttgacgagtc tttctctgca ggtccggata      3840
     aaattccgag ttgcataatc aaacagtgtg ctgcatctct ttgcggccca atcacttttc      3900
     tatttaacct ctcattgcaa ctgtcattct ttccaagtgt ttggaagaca tcttttttaa      3960
     tccctcttca taagaaaggt tctaaaactg atgtcggtaa ctaccgaggt attgccaagc      4020
     tgtctgcgat tccgaagctt ttcgaacgtc tagtaacctg tcagattcag catatgtgta      4080
     gttcaattat ttcaacctcc caacacggat ttgttaagaa acgttctcct tctacgaatc      4140
     ttctcgaatt ttcgcgtcta attcattgta gttttctcca gaagaaacaa gcagatgtca      4200
     tattcaccga tttcagcaag gcgttcgatt cggttaacca ctctttactt atttataaac      4260
     tatctctcat tggatttcct ccctacttac ttgattggat ttcgtcatac ttgtcgaata      4320
     gatctcaacg tgtattgttc aaaaacgtag tatcttctct ggtaaatgtt acttcaggcg      4380
     taccacaagc tacaagtcac ctgggaccat tactattcat tttgtttatt aatgacctcc      4440
     cacaggtgat gtcctactgc accactttta tgtattcaga tgatgtgaaa atctgtatgt      4500
     cattttctaa tttaagctca catcttctta ttcagtctga cctcaataag ttccaggctt      4560
     gggcctcaac aaaattgtta tcactaaatt attcaaaatg caaaacaatg tcgttctccc      4620
     gcactacttt tcacacaacc tcgtacaccc ttggaaactc cttattggaa cgcgtggtga      4680
     aaattaatga tcttggtgtg ttgttcgatc aaaaactttg tttcaatagc catatctcag      4740
     ttatggttaa taaagctacc ggcgtcttag cctttattaa gcgttgggca aaagagttca      4800
     atgatccgta tacaactaaa tcgttatacg taagcctagt tcgcccaatt atggagtact      4860
     gttctgaggt atggaatcca caatatgtat accaacagaa cttaatagaa tcggttcaaa      4920
     aacaattttt gttatttgct ttgcgcaacc ttaattggga tcctgatcgg cacttaccac      4980
     ctcatttgtc caggctaaaa ttgattgacc taaacacctt aaaacaccga gaatttaatt      5040
     gcaaaatttt ctgaccaaaa agacgattta agattgtgtt gatgggtttc cgcattagga      5100
     ttattaggat tcccacaatg ttttggagca atttcttgat ctgcagcgaa gtgtttgcca      5160
     aatgctgtat cagcaatttc agcatacgtt aactgagaga cataattagc gtcaaatgta      5220
     ttgacttatg tattcttatg ttaccttgca aaccatttac ttaatctcgt ttaaaaatta      5280
     tctgattttg acaaaattaa tgataattgt tataagccga ggtttgataa ttaaccaaat      5340
     gcaatccagt tgggctttcc agtttcgaat ccgaatgaat ttagttgtgt tcagaagaat      5400
     tattgcacaa ctaaagatgt tatgaaaaaa tagattcat                             5439
//
ID   CR1-3_DBp   repbase;    DNA;    INV; 4339 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4339
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 700-700 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           553..1257
FT                 /product="CR1-3_DBp_1p"
FT                 /translation="MRSFMRQTKNGFKELITGFRKINDQLCALDTQFSGLQ
FT                 LLNESPKRKKSAVSDPPQPAQPXLMQPLISLATPRARTEKNSSXFLRDNEQ
FT                 LSDMSAMASLQVMPQVLGNETPIRVTQKGIPQSGPPAPTDAAVLVPATPKP
FT                 LQVIPPSKHIFVSRLAPDTSEIDISAYIKAKTKADIKVEDIQKFKYNYTRR
FT                 TSSFKIRVPALMFKTICSPSFWPENLFVQEHQPSSVKKKXINQWE"
FT   CDS           1316..4156
FT                 /product="CR1-3_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="PKKLVSSLTLTYQNTRGLRSKLPKLYSDSSFFASHII
FT                 AFTETWLNPEIFSSEVFPSKYTTFRRDRSQRRGGGVLISVDSTFASEEVKS
FT                 QEFGDIEFICVKITMSVKALYITCSYIPPMSEPPTYWQHLSAIRYVSNLMT
FT                 DRDQLVAVGDFNIPELKWSNVDNSPSLSLITYHDFTAGMFDMSLGQINHVR
FT                 NSLGRLLDLCFVSDPDGTALSRAFPLSTPEDPYHPTLEVSIETTPGIDQMS
FT                 PSVVNKIRCFRKADFQKLNSLIDTFDWSDILACTDLNVTLEKFYFTLNTFF
FT                 DSCVPWKYPSASTNPPWFTRCLTNLKNIKNKLLLKYKKTCSSVDFSRYLLA
FT                 RSNFTVHNAECYRNYIDRCRIQFTQDPKQFYNFVNTKRKHVSFSPLLTFEN
FT                 SSATSDQAIADLFAEFFQTTYSPPKLTDQPYAYNIQAANLIFCPFFSENNL
FT                 LSGLLRVKPIYSPGPDGVPGCVLKYCARALCKPLLRLFNLSLETSIFPLKW
FT                 KESFIIPLHKKGKKSEAANYRGISKLSAIPKLFEKLITPHLQHLCSSIITP
FT                 CQHGFIKRRSTTTNLLELTSFVIDGFCKGYQTDVIYTDFSKAFDSVNHSLL
FT                 LSKLNMLGFPKDLLTWISSYLDGRTQRVLFKNIQSRLVRATSGVPQGSHLG
FT                 PLLFTLFINDLPPALTNSLVLMYADDVKLCLQYKSISAQCSLQSDLDNFQK
FT                 WCLANDLILNGSKCKHMSFYRSCPLQATYSINGIALEKLTQVNDLGILLDI
FT                 KLKFADHISLMVNKAKGVLGFIKRWSKEFNDPYITKTLFISLVRPILEYGS
FT                 CVWSPQYGVHKDRIESVQKNFLIFALRGLYWDANLQLPSYSSRLLLINLPS
FT                 LTNRRTMLGVVFLHNLINGDVDSQHLLTRLNFNIPNRRTRNFSPLFLSRCS
FT                 STYALHDPFRVLCSNYNGLYSITSLSCPSNLKYRILNFLTNSS"
XX
SQ   Sequence 4339 BP; 1224 A; 980 C; 760 G; 1352 T; 23 other;
     acttccctct ctttctctca agcgaacggt cgtgtttttt ttgtgcgcac tgcgtttwtg        60
     acaaatatts gtaaaccggt gtttacwcac ttgtgaattg aatmttgwga atcttaasaa       120
     tcttaagcct aaaccgtatc gcttcgcgag tgctgtggta tatttggagt cgaattaaca       180
     awttgtmtaa wttcwattcc aagcatagct cagckctgct tcccgkctta tctmtatttc       240
     tgcatttctc ttttgctctc tcaaaggctc ctgtttggca cagtgsttca aggtatwgtg       300
     ttttttamct ttttawatat taattttgtt ttattaaata aaaaaaaaaa aataaaatgg       360
     aatttaaact tgtctgtgcc attaagtctt gtaacaagac aatttccaca tcccagccta       420
     gcatccattg ctggctatgt gaaaacgtcg tgcacgccaa gtgtgccggt tcactgctca       480
     gtttcggatg ccatttcccg taggtcgggt ttacattatt gttgtgawaa ttgtcgtgct       540
     gtgcaaggcg aaatgaggtc gttcatgaga cagaccaaaa atggatttaa agagctgatc       600
     actggttttc gtaaaatcaa tgaccagctc tgtgcgcttg acactcaatt tagcggcctt       660
     cagctgctaa atgagtcccc taagcgtaag aaatccgctg tttctgatcc gcctcagcct       720
     gctcagccga nattaatgca gccgctcata tctctggcca ccccaagggc tagaactgag       780
     aaaaattcgt cagamtttct cagggataat gagcaattgt ccgatatgtc cgccatggca       840
     tcccttcaag tgatgccaca ggtcctaggg aacgaaaccc ccattagagt cacccaaaag       900
     ggtattccac agtccggacc accggcaccg actgatgctg cagttctcgt acctgcgaca       960
     ccaaaaccct tacaggtgat tcctccatcg aaacatatat ttgtttctcg gcttgcccct      1020
     gatacttcag agattgatat ctcggcttat atcaaagcca aaactaaagc cgatataaag      1080
     gtggaggaca tacaaaaatt taaatataat tatacaaggc gcacgtcttc tttcaagatt      1140
     cgtgtgcccg cgctgatgtt caagacgatt tgttctccca gtttttggcc agagaatctt      1200
     ttcgtccaag aacatcagcc tagttccgtg aaaaaaaagt twataaacca gtgggagtga      1260
     gacttcccaa aatcggaacc actgaccaac cctccacctc ttctttggcc actaacccaa      1320
     aaaactagtt tcctcactaa ctcttaccta tcagaatact agggggctac gtagcaaact      1380
     ccccaagcta tattctgata gttctttctt tgcatcccat ataatagcat ttacagaaac      1440
     ttggttaaat ccggagatct ttagctccga agtttttcca agtaagtaca ccacttttag      1500
     acgggatcga tctcagcgaa gaggaggtgg agtcctcatt tcggtagact ctacttttgc      1560
     ttctgaagag gtgaaatccc aagagtttgg tgacatagaa tttatttgcg ttaaaatcac      1620
     tatgtccgtg aaagctttat acattacatg ttcatatata cctcctatgt ctgaaccgcc      1680
     cacatattgg cagcatttgt ccgctattcg atacgtctct aatcttatga cggatcgtga      1740
     ccaactcgta gcggtgggcg actttaatat cccagaatta aagtggtcca acgtcgataa      1800
     ctcaccatct ttgtcactta taacttacca tgacttcacc gcgggcatgt ttgacatgtc      1860
     cctaggtcag atcaatcatg ttagaaattc gctaggtcgg ctcttagact tatgttttgt      1920
     atctgatcct gatggtactg ctctctccag agcttttccc ctttcaaccc cagaggatcc      1980
     atatcacccc acgctggagg tctcaatcga aaccactcct ggtatcgatc agatgtctcc      2040
     gagcgtggta aataagattc gctgtttccg taaagctgat tttcagaaac ttaatagcct      2100
     tatcgataca tttgactggt ctgatattct ggcgtgcact gatcttaatg tcactttaga      2160
     aaaattttat tttactttaa atacattttt tgactcatgt gtgccttgga aatatccgtc      2220
     cgcttcaaca aatcctcctt ggtttacaag gtgcctcact aacctaaaaa atataaaaaa      2280
     taagctttta cttaaatata aaaaaacctg cagtagtgtt gatttctcaa gatacctact      2340
     agctcggtcg aattttaccg tgcataacgc tgaatgttat aggaattata ttgaccgctg      2400
     ccggattcaa tttactcagg atccaaagca gttttataat tttgtaaaca ctaagcgtaa      2460
     acacgtatct ttttcacctc tgcttacgtt tgaaaattcc tctgcgactt cggatcaggc      2520
     cattgccgat ctattcgcag aattttttca aacaacttat tctcctccta aattgactga      2580
     tcagccttac gcatataaca ttcaagcagc aaatcttatt ttctgtccgt ttttttctga      2640
     gaacaactta ttatctggtc ttttaagggt aaaacccatt tattcgccag gccccgacgg      2700
     agtaccaggc tgtgtgctaa aatactgcgc cagggctctg tgcaaacctc ttctaagact      2760
     tttcaactta tctttggaaa cctcgatttt tccccttaag tggaaggaat catttataat      2820
     tcccctacat aaaaaaggga aaaagtccga ggctgccaac tacagaggca tctctaagtt      2880
     gtcggcaatt ccaaagttat ttgaaaaatt aattacccct catttgcaac acctttgctc      2940
     ttcgatcatc actccttgtc agcatggctt tattaagcgt cgctccacca ccacaaactt      3000
     attggagttg acatcctttg tcatagacgg cttttgtaag ggatatcaaa ccgatgtaat      3060
     ttacacagac ttcagcaaag catttgattc agttaatcac tcactcttgt tgagtaaact      3120
     gaatatgctg ggttttccta aagacctctt aacgtggatc tccagctacc tagatggaag      3180
     gacacaaaga gtcttattta aaaacataca gtcccgtctg gtccgtgcta catccggcgt      3240
     ccctcaagga agtcatcttg gcccgttatt atttacgctt tttataaacg acttgccccc      3300
     tgctttaacg aactctctag ttcttatgta tgcagatgat gtaaagcttt gtcttcagta      3360
     caaatccatc tctgcccaat gcagtcttca gtctgacctt gataactttc aaaaatggtg      3420
     tttggctaat gatctaatac ttaatggatc aaaatgcaag catatgtctt tttatcgttc      3480
     ttgccctctg caagctackt attctattaa tgggattgcc ttagaaaaat taacccaggt      3540
     taatgatctc ggcatcctat tagacataaa acttaaattt gccgaccata tttccttaat      3600
     ggttaataag gctaaaggag tccttggttt tattaaaagg tggtcaaaag aatttaatga      3660
     cccctatata accaaaacwt tattcatttc tttggtccgt ccgatactgg agtacggttc      3720
     atgtgtctgg agtccccaat atggagtaca taaggaccgc atagaatccg tacaaaagaa      3780
     ctttttaata tttgcactta gaggtctata ctgggatgca aatcttcagc ttccatccta      3840
     cagtagcaga cttttactta taaacttacc tagcttaaca aatcgtagga caatgctcgg      3900
     tgtagttttt ctgcataacc ttattaacgg ggatgtagat agccagcatt tactaacacg      3960
     cttaaatttc aacattccta atagaaggac tcgaaacttt agtcctctgt tccttagccg      4020
     ttgtagttcg acatatgcac tgcatgaccc ttttagggta ttatgttcga actacaatgg      4080
     tctctactct attacatctc tttcctgtcc ctctaattta aaatatagaa ttttaaattt      4140
     ccttactaac tcctcttagc ttaataatta acaaataact taatatactc taacaaatcg      4200
     tttcttgagc gcccctcggt cgtctgggcc tctaagcttt atgatgaata caggaatgct      4260
     agctgatgct cttattgatg cacaagccat ttccaaattc tgaaagaccg aagaaaaaaa      4320
     aaaaaaaaaa aaaaaaaaa                                                   4339
//
ID   CR1-3_DEl   repbase;    DNA;    INV; 3440 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3440
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 569-569 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1255..1914,1845..3362)
FT                 /product="CR1-3_DEl_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MPSTDSIALVPTAHEFVHGLIDLSLGQLNSVLNCSRK
FT                 VLDLIFVSEFANAYVTRISPLSNPEDAYHPTLEVTLAPLLSCPEIEPASFR
FT                 CFRRAKFAEMNRHLSELDWSFMDSNDDPLHIVEQLSIRSFPHFPLQMKNSM
FT                 SRLFKKFKRTGLQVDHSSLFAKFFQSTYSSFSYDNTSSYPYPLPHSNCIFT
FT                 PLISEDDVLQNLQQSRRLSLRALILYRAVLCFTKSATIKTSFSSGPDLVPS
FT                 CVIKKCADALCKPLSKLFQISLLHSYFPEVWKESFIIPLHKKGSKSDIKNY
FT                 RGIAKLSAIPKLFEQLITAQLQHQCSSVMSPTQHGFMKRRSTTTNLLEFTS
FT                 VIRSAFKNNYQTDVIFTDFSKAFDSVNHQLLLKKLILLGFPIPLTKWISTY
FT                 LSNRTQRVAFKSTFSNFVHVTSGVPQGSHLGPLLFGIFINDLPQVVLSSHV
FT                 MMYADDVKLCLPLSNPNSHELLQADLNNLHSWCIQNLLFLNNSKCNFMSFY
FT                 RKRLLLTSYSIGSNDLERINFVTDLGVLFNHNLNFSDHIGIIVSKAKGVFA
FT                 FVKRWSKEFEDPYTTKHLYISLVRPILEYCSCVWSPQYTNYQDLIESVQKQ
FT                 FLLFALRGLNWDTHRHLPSYVDRLRLLNLPSLKDRRTCHGVMFLHKLITGL
FT                 VHSSYLLGQIRFSIPVRSTRHFRPIALDICKTNFEVHDPFRVLCSQYNELY
FT                 FLIFSECSVNLIVTNILTHLSLPPPT"
FT   CDS           join(299..793,745..1044,918..1265)
FT                 /product="CR1-3_DEl_1p"
FT                 /translation="MASTDVADGRTADASSGPSPAAAYSGLVNIDQELRRA
FT                 AAVGSGMILTPSNTLSGVAHLEPKPLSGVALKKLIFVSRLNPGAFEDDVKN
FT                 YLSSKLNVSRAELTVLKFKFKQRREISSFKIGLPEEHLNKALDVSIWPEHV
FT                 IVHEYVNMLNPRVHGPQIPLTNVPKNSSGPWASDSFNQRSKKLNNSFSLHY
FT                 QNVRSLLGKLSKLHVNSVSFDANVIAFTETWLNSSCLTAKYLLEIMLYIDV
FT                 TAQCVLAVVFLLPSSPILSLNAFRFLLSDCEIFAGNYVIYRCDRTMRLGGG
FT                 VLIAVKSDLVSERIPIIGTDSILSLLQFGLSFMIISFLYHARIFPLVLILA
FT                 STFSIWLKYRVFIQPSAITIILLLWATLTSCHILDAIN"
XX
SQ   Sequence 3440 BP; 904 A; 817 C; 615 G; 1103 T; 1 other;
     ctgcctgctg catcaagcct tgccttttaa atggtaaaat ctcctctcga catcccacaa        60
     ttggttgctg gctgtgtgac aacattgctc accctaaatg tgccgacctt gggcacagtg       120
     ctggccttat tgcwgaccgg actaaatcaa attctaacct ggattggacc tgccccagtt       180
     gccatcatat taaagtcgat attatggctt tcacaaggaa accgatctgg agtaccagga       240
     cttattcact cggtttgaaa aggctgaatc caactttaaa agccgtttgg ctaccaggat       300
     ggcctctact gatgttgctg acggccgcac ggcagacgct tcctctggac cttcacccgc       360
     cgctgcctat tctggactcg tcaacattga ccaggaatta cgtcgtgctg ctgcagttgg       420
     ttctggcatg attttgacgc cttctaatac cttatctgga gtcgctcatc tggaacctaa       480
     gcccttatcg ggcgttgcac taaaaaagct tatttttgtc tcccgcctta atcctggtgc       540
     ttttgaagat gacgtcaaaa actacctgag cagcaaactg aatgtttctc gagccgaact       600
     aaccgtcttg aagttcaagt ttaagcaaag acgtgaaata tcttcgttta aaattggact       660
     tcctgaggaa catcttaata aggctctcga tgtttctata tggcctgaac atgttattgt       720
     tcacgagtac gtaaacatgc ttaatcctcg ggtccatggg cctcagattc ctttaaccaa       780
     cgttccaaaa aactaaataa ttctttttcc ttacactacc agaatgttcg cagcttattg       840
     ggcaaactta gtaaactgca cgtcaacagt gtctccttcg atgccaatgt gattgctttt       900
     accgaaacgt ggcttaattc ctcttgtctg actgcgaaat atttgctgga aattatgtta       960
     tatatagatg tgaccgcaca atgcgtcttg gcggtggtgt tcttattgcc gtcaagtccg      1020
     atcttgtctc tgaacgcatt ccgataattg gtacggacag catattgagt ttgttgcagt      1080
     tcggattaag cttcatgatt atttcgtttt tatatcatgc tcgtatattc ccccttgttc      1140
     tgatcttagc ctctaccttc agcatttggc tcaaatacag agtattcatt caaccctcgg      1200
     ctataacgat catcttattg ttatgggcga ctttaacctc ctgccatatc ttggatgcca      1260
     tcaactgatt caattgctct cgttcccacg gcccatgagt ttgttcacgg tcttattgat      1320
     ctttcattag gacaacttaa ctcagtcttg aactgctcca gaaaagtttt agaccttatt      1380
     tttgtctcgg agttcgccaa tgcttacgta actcgaatta gccctctctc caatcctgaa      1440
     gacgcctacc atcctacact tgaggttact ttagctccat tactgtcatg tcccgaaatc      1500
     gaaccagcat cttttcgctg ttttcgaaga gctaaattcg cagaaatgaa taggcattta      1560
     tcggaactcg attggtcttt tatggattca aacgatgatc ccttacacat tgtagaacag      1620
     ctttcgatac gttcgttccc tcatttccct ctgcaaatga aaaactccat gtccagactt      1680
     tttaagaaat ttaagagaac cgggctgcaa gttgaccatt cgagcttatt tgcaaaattt      1740
     ttccagtcca catactcgtc ttttagttac gataacactt catcctaccc ataccctctt      1800
     cctcactcca actgtatttt cacgccccta attagtgagg atgatgtttt acaaaatctg      1860
     caacaatcaa gacgtctttc tcttcgggcc ctgatcttgt accgagctgt gttataaaaa      1920
     aatgtgccga tgctttgtgt aaaccattat ctaaactttt tcagatatcc ctcctacatt      1980
     cgtatttccc tgaagtttgg aaggaatctt ttatcattcc acttcataaa aagggaagca      2040
     aatcggacat taaaaactac cgcggtattg caaaactgag cgcgatcccc aagctttttg      2100
     aacagcttat taccgctcag ctacagcacc aatgcagctc agtaatgtcc ccaactcagc      2160
     atggctttat gaaacgaagg tcaacgacta caaatcttct tgaatttacc tcagtcatca      2220
     gaagcgcttt taaaaataac tatcaaactg atgttatttt tacggacttc agtaaggctt      2280
     tcgattccgt gaaccatcag ttattattga aaaaactaat actcttagga ttcccgatcc      2340
     cgttgacaaa gtggatttca acatacctgt cgaaccggac tcagagagta gcttttaaaa      2400
     gcacattctc taactttgtt cacgtgacct caggtgttcc gcaagggagc cacctaggac      2460
     ccctactgtt tggaattttc ataaatgact tgcctcaagt agttctctct tctcatgtta      2520
     tgatgtatgc tgacgacgta aaactttgtt tgccgttatc gaaccccaat tcccatgaac      2580
     ttttgcaagc cgatctgaac aatctgcatt cttggtgcat ccagaatttg ctgtttttaa      2640
     acaactcgaa atgtaacttt atgtcctttt atcggaagag gcttctcctc acttcatatt      2700
     ctattgggtc gaatgatctt gaacgcataa atttcgtaac agaccttgga gtgttattca      2760
     accacaactt aaacttctct gatcacattg gcattatagt tagtaaagca aaaggggttt      2820
     ttgcctttgt taaacgttgg tctaaggaat ttgaggaccc ctataccacg aaacacttat      2880
     acatttcctt ggttcgtcca attcttgaat actgctcgtg tgtttggtct cctcaatata      2940
     ccaattatca ggaccttata gaatcggtac agaaacagtt ccttttgttt gctttacgtg      3000
     gtttaaactg ggatacacat cgtcacctac catcttacgt ggatagactg cgtctactga      3060
     acctgccctc cctcaaggat cgtcggacct gccatggtgt catgttcctt cacaaattaa      3120
     taactggact tgtacattca agctacctac tgggtcaaat acggttctcc atccctgtaa      3180
     ggtctactcg tcactttcga cctattgccc tcgatatttg taagacgaat ttcgaggtac      3240
     atgatccatt tcgcgtttta tgttcgcaat ataacgaact gtattttttg atattttctg      3300
     aatgctctgt taatttaatt gtaacaaaca tcctaactca cctgtccttg ccccctccca      3360
     cttgatgtga gtcgggtact atgtttatgt tggcagatat ttgctaactt aatgtaataa      3420
     ataaaaaata aataaataaa                                                  3440
//
ID   CR1-3_DK    repbase;    DNA;    INV; 4401 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4401
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1330-1330 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1412
FT                 /product="CR1-3_DK_1p"
FT                 /translation="MSXNMVCFAKNCKKSITYGELTITCWLCDNIVHAKCI
FT                 GVVARTVDDVAKNIGVRYCCEACREVEREMMSFMRQTRGGFKELLXXFRKT
FT                 QDMLLALDTQFNXLKLLNESPRRKKTATGGQHIGGSQPPVIGTAQQPPSTL
FT                 PPTPGQIPRVLRSSAKKDSVPECVAGATVPPVLPSSVLSTGGSQLLSQPSQ
FT                 SPNPSPCQGIRPGLPAESGMVAQSAVPKPLTAIPPTKQLFVSRLSPDQTSE
FT                 DVIAFIQGKVKVDREKIKVEKFKFSYPRNISSFKINVPDEVFGTLCSAETW
FT                 PQYVVVKEFEGTKKKKRPVGITLPRPDLPNAPSTSSNSVPKN"
FT   CDS           1361..4267
FT                 /product="CR1-3_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="ARFAQCSVYVFQFRPKKLTSSLXISYQNARGLRSKLP
FT                 KLYSDSVAFASQVIVFTETWLKPEILSSEVFPAAFTVYRLDRPIRRGGGVL
FT                 IAVDSTLTSELIIFEESNNVEFLCVKLSVNGSSIFVTCSYIPPLSELPIYW
FT                 NHLSAIQLVSKRLSDRDHLVVLGDFNIPGAIWSLDNSTNTLLTTTHHDFIA
FT                 GLFDISLSQVNHVRNSLERLLDLCFVSDPERVSLARVAPLTQPEDPYHPTF
FT                 DVTIDMGTVSRNKSDSPAQEVFCFSKTDFVRLNNFIINYNWSDLYTCTDMA
FT                 EAVGIFYRVMNSFFIDCVPLYCPSTSNKPPWFTKELTRLKNRKSNLYAKYQ
FT                 RTGSPIVLSSYLSARSTFTVCNAQCYNNYLTRCRSQFSEDPKQFYNFVKSK
FT                 RKSITRPSSLSFGNSTADNDQAIADLFAQFFETTYSNSIDPNQAYPYIIPK
FT                 SNQIFSPTINESSLLRDLHRVKPVFLPGPDGIPGCVLRNCAEALCNPLLKL
FT                 FTLSLETSHFPLIWKESFVIPLHKKGSKLDANNYRGISKLSAIPKLFENVI
FT                 TPHLQHLCRSIISPCQHGFIRRRSITTNLLELTSFIIKGYRNNFQTDVIYT
FT                 DFSKAFDSVNHSLLVRKLDLMGFPTDLLNWISGYLNGRTQKVLFENKLSNV
FT                 LRVTSGVPQGSHLGPLLFTLFINDLPEVLTNSRVLMYADDVKLCVQYNDAT
FT                 CQSDLQTDLNNFQTWCCVNLLNLNGSKCKLMTFSRVTPKPATYTLNGCSLE
FT                 KINIVDDLGVRLDPKLDFIDHISCMVNKARGVLGFIKRWSKEFNDPYVTKT
FT                 LYTSLVRPILEYGSCVWSPQYGVHSKRIESVQKNFLLFALRGLNWDANQRL
FT                 PSYSSRLLLINLPSLSDRRTMLGITFLYNLIRGDVESTDLLGQLNFHVPIR
FT                 NTRSFLPLVLPHCRTSFELHEPFRVLCANYNDLYTIISNVDSLPKLKTSIL
FT                 TYLRMQATNPAVRQ"
XX
SQ   Sequence 4401 BP; 1135 A; 1037 C; 850 G; 1361 T; 18 other;
     atattcatcc ttccttcaaa gtgaacggac gtgttttttc ttgcgctccc gatttgtgta        60
     gaatttgtct awaaacctcc ggggtttact awcatttaat atttggtgtt tcwaataatt       120
     cccgttcact tcgcgtgtgc atgctacttg tctattttgt gctatttaaw tcaatttaaa       180
     ttgcatttta gtttgggctg ctgcggttgc tttgcatttt gctctttttg cattcccttt       240
     tgtgccttta gcgtttgttg ttgtttgcgt tgccgcgaca gctataaacg gttctactca       300
     gsgcttatct cwcgctctcc cgctckttgs ccccccgctc wtcwagtgcc gctgcattta       360
     atcccttgcg ccctctctta aatagcgagg tacagtggta agtccttaca atgtcccwta       420
     atatggtctg cttcgccaaa aactgtaaga aaagtattac ttacggtgaa ctcaccatca       480
     cctgttggct gtgtgacaac atagtacatg ccaagtgcat tggcgttgtt gcacggacag       540
     tagatgacgt ggccaaaaat atcggcgtac gttactgctg cgaggcctgc cgcgaggtgg       600
     agagggaaat gatgtctttt atgcggcaaa ccaggggtgg ttttaaagag ctwttattkw       660
     gttttcgcaa aactcaagat atgctcttgg cgctggatac tcaatttaat ascctcaagc       720
     tgttaaatga gtctcctagg cgcaaaaaaa ccgcaactgg tgggcagcat attggcggat       780
     cccagccacc agtgataggc actgcacagc agcctccctc gactctgccc ccgaccccgg       840
     gacaaattcc aagagtcctg agatcgagcg ctaaaaaaga ttcggtaccc gaatgcgtcg       900
     cgggtgcgac cgtgcccccg gtkttgccca gttccgtttt gtccactggg gggtcccaac       960
     tgttgtctca gccctctcag agccctaatc ccagtccctg ccagggtatc aggcccggac      1020
     taccggccga aagtggtatg gtggctcagt ctgccgtgcc aaaacccctt acggcaattc      1080
     caccaacaaa acagttattt gtttcgcggc tttcccctga tcagacatcg gaagatgtca      1140
     tagcttttat ccaaggcaaa gtaaaagtcg atagagaaaa aattaaggtg gaaaaattta      1200
     aattttctta ccctaggaac atttcgtctt tcaagataaa tgttcctgac gaagtctttg      1260
     gcactctatg ctctgccgaa acctggccac agtatgtggt tgtcaaagag tttgaaggta      1320
     cgaaaaagaa aaagcggcct gtaggaatta ctcttcctag gccagatttg cccaatgctc      1380
     cgtctacgtc ttccaattcc gtcccaaaaa actaaccagt tcccttkgta tttcctatca      1440
     gaatgcaaga ggcttacgca gtaagcttcc taaattgtat tccgacagcg tcgcatttgc      1500
     ttcccaagtt attgtgttca cagaaacctg gttaaagccg gagattctga gctccgaagt      1560
     ttttccagct gcgttcacag tataccggct agatcggcct atcagacgtg ggggaggtgt      1620
     ccttatagcg gtcgactcca ctctcacgtc cgaattaata attttcgagg aatccaacaa      1680
     tgttgaattc ctttgcgtga agctatcagt taatggtagt tccatttttg ttacatgttc      1740
     ctacattcct ccattgtcgg aacttcctat ttattggaac catctttccg ctattcagtt      1800
     ggtctccaaa agactttcgg atagggacca tttagtagtt cttggtgatt ttaacatccc      1860
     aggggctatt tggtccctag ataattccac taacacactt cttacgacaa cacatcatga      1920
     ttttattgct ggcttgtttg acatttcgct gtcccaagtc aatcatgttc gaaattcctt      1980
     agagcgcttg cttgatcttt gttttgtctc agatcckgaa agagttagtt tagctagggt      2040
     ggcgcccctg acgcaacccg aagatcccta tcatcccact ttcgatgtga ctatcgacat      2100
     ggggactgtt tcacggaata aatctgacag tccagcccaa gaagtcttct gctttagcaa      2160
     gacggatttc gtacggctga ataatttcat aattaattac aactggtccg atctatacac      2220
     atgcactgac atggcggaag ccgtgggtat tttttatcgt gttatgaatt cattttttat      2280
     tgactgtgtt ccgttatact gtccgtctac atcaaacaag cctccttggt ttaccaaaga      2340
     gttgacccgc ctcaaaaata gaaaatcaaa tctatatgct aaatatcaac gtaccggttc      2400
     tccgattgtc ctatctagtt atttatcagc tcgatccact tttactgtgt gtaacgcgca      2460
     gtgctacaat aattatttga ctcgttgcag gtcccagttt tctgaggacc caaaacagtt      2520
     ttataatttt gttaaatcca agcgtaaatc cattactcgt ccgtcctcgc tctcttttgg      2580
     taattcaaca gcagataatg atcaggcaat agccgatctt tttgctcagt tttttgaaac      2640
     cacttactcc aactcaatag acccaaatca ggcttatcct tacatcatcc ccaaatcgaa      2700
     ccaaatcttc agtcctacca ttaacgaaag ctctcttctt agggatcttc atcgtgttaa      2760
     gccagttttt ttaccaggtc ccgacggaat accaggctgt gtgcttagga attgtgccga      2820
     agccctgtgc aatccacttc tcaaattgtt taccttatcc ttagaaacct cccactttcc      2880
     ccttatttgg aaggaatcat tcgttattcc tctccacaaa aaaggtagca aattggatgc      2940
     caacaattac agaggtatct ctaagttgtc ggccatccct aaactgttcg aaaatgttat      3000
     tactcctcat ctgcagcacc tgtgtaggtc aattatttct ccatgtcaac atggttttat      3060
     taggcgaaga tcaattacaa cgaatctgtt ggagcttact tcctttatta taaagggata      3120
     ccgaaataac tttcagacag atgtaatcta tactgatttc agtaaagcat ttgactctgt      3180
     taaccattct cttcttgttc ggaaactcga tttaatggga tttccgactg atcttcttaa      3240
     ttggatctca ggttatctaa atggcaggac gcagaaggtc cttttcgaaa ataaactatc      3300
     taatgttctt agggttacat ctggcgtccc gcaagggagt catttgggtc ccctactgtt      3360
     tacgttattt atcaacgatc tgcccgaagt tttgaccaac tccagagtac ttatgtatgc      3420
     tgatgacgtc aagctttgtg tgcaatataa cgatgctact tgccaatcag acttacagac      3480
     agatcttaac aattttcaaa catggtgctg cgtgaactta ttaaacttaa acggctctaa      3540
     gtgcaagcta atgacattct cccgtgtcac tcctaagcct gcaacttata cgctaaacgg      3600
     ctgctctttg gaaaaaatta atatagttga tgatttaggt gtccgtctgg atcctaaact      3660
     cgactttatc gatcatattt cgtgcatggt gaataaagcc aggggtgtgc ttggtttcat      3720
     taaacggtgg tcgaaggaat tcaatgaccc ctatgttaca aaaacgttat atacttcact      3780
     tgttcgtcct atcttagaat atggatcctg cgtttggagc cctcagtatg gcgtccatag      3840
     taaacgcata gaatcggttc aaaagaactt cttacttttc gctttacgcg gtttaaactg      3900
     ggatgcaaac cagaggttac cgtcttattc tagtagactc ttactaatta acttaccctc      3960
     cttatctgat cgtagaacca tgctaggtat tacattctta tacaacttaa tccgtggtga      4020
     cgtggaaagt actgacttgc tcggtcagct aaattttcac gtaccaataa gaaacactag      4080
     atccttttta ccattagttt tgccccactg tagaacatcc tttgaactgc atgaaccctt      4140
     tagagtcctc tgtgcaaatt ataacgattt gtacacaata atatctaacg ttgatagcct      4200
     cccaaaacta aaaacttcaa tcttaaccta cttacgcatg caagcaacca atccggcagt      4260
     acgccagtag tagtctcccc gcatcctttt ttttaagtcc ttcgcgttta ctaattgcta      4320
     acagaacaag cacgtgcttg gtgtcgcaag ttccacttga tatgtactgt acatagtgca      4380
     tcaacgtctt gcaataatat a                                                4401
//
ID   CR1-3_DPer  repbase;    DNA;    INV; 4396 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4396
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1645-1645 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 4396 BP; 1055 A; 1008 C; 977 G; 1352 T; 4 other;
     ctgtcctctg ttcttctttg tgccgccgag cgttttactt gacttgcatc gatttgcacg        60
     cagacgcagt taaactttta acaaatctgc ctaatttgtt atggcagtgt gataactgtg       120
     tggttgcgaa tgactcgcat tcgaaaatag atgagcttaa cgacaaggtt ctgaagcttg       180
     aaaaccttta tcggagtttg aagtctgatt ttcagactct ttcgaccaat tctcatgagc       240
     atgtgaagcc gattgctcca aaaaaagatt ccaataggcc aaagccggcg accgacttaa       300
     tgtctccacg gtttgtggct gccacctcga ctgaggtcat tgacttggga acagctgctg       360
     ctcccctacc cgatctggag ggcttcgggc ttcgtcacag tcagaaggaa ggagaggaag       420
     aatcggaaga agcatgccaa tcgtcttgtt ggtgttgctc cgagctgcga acagctgagt       480
     gtgatgcaga gcagtaaata cctgcatatt ggtaaattat ctaccgcaat gggtccagag       540
     gcgttggtga aattcgttgc tgataagctc aaggtgccgg aggcggaaat ttcttgcgtg       600
     aaattggtca agcgagatgc tgatttatct gcgttgaagt tcgtaaattt caaacttggg       660
     gtctctgaac ctttattccc cttggccttt gataatagat tctggccagt atcggtaagg       720
     gtttcccgct ttgtgcatag acagaggccg gaagctgatt tgacggcagt taatctgtgt       780
     gcagctgtgc cattgcggac gtccacgccg actcagaaag ctccagttcc atccacttca       840
     aaaaaccccc agtgagcggc gcctctggct ttatgatcgc cgcttctccg caacatattc       900
     tacttgcact ttttcgcctt tttgctatga gcaacagccc gttgtttcat ttttggcaaa       960
     caacaaaact ttgacttttc gatctgcgct ttgtgcgata ttcgctcggc tgctgatgga      1020
     tcagatgacg atgctcttgc tggcgctctc tcccgacaac gtgcgcttct aacgtcatca      1080
     ttacaacaac aaatgcaaat gcattgcttc gtatgctatg cttgcgccgt cgctgctctc      1140
     gacatttggg aagagtcagc agcccgtcgt gcgctcttat gtggaacact ctcttcaaca      1200
     ctctcttcag catcgtcaca tagattggcc ctcccggctg cttccctccc ctcttttatg      1260
     gacaaggatg gtgtgctact gattcggact tcaacgctta ggctggctct aggcatgggc      1320
     ctcgctcctt ggagtcagtt ggatatggct gaccctcgtc tggacccatc ttccgtggcc      1380
     aataacagga cggcaccgcc actttctgag accgtgccga tggttggttc caagtctata      1440
     cgaatttttt ttgtaaaata tagcgggcat gcgcaccaag gctcaggctg tcatcgtggc      1500
     tacctctacg tatgacttcg acattgtcat tttggttgaa atctggctca attgtaactt      1560
     tttcgacaac gaatacttcg atcctagcct tttccaggtt tttcgtaagg acagagattg      1620
     tgccaaaacg tcattgtggc cgtcagacgc accctacgct gcgatcggat ttgtctcctg      1680
     gatggagact ctgttctgga tcagattggt gtggcggtgg ctggccagtt ggagacacta      1740
     tttattagcg catcctacat tccgccaaat agcagctatg aaatatacaa ggcgaacaca      1800
     cagaacattt ctaacattta tagtaatctg cgagaccgtc agcacctctg cgttgttggc      1860
     gacttcaatt tgggttcgtt ggtatggtcc ggcgatccgc aatcgtcggc tatgatacct      1920
     agtaatgtac atttgtcgaa cgagattctt ttcctagacg actgttttag tatgggctta      1980
     tcccaagtaa ataatgtgtt taataagcta aataagattc tagacttaat ttttgttagt      2040
     tcggatatag attgccatgt tacatgttgc gaactcccca tcgcggaatg cgacatgcat      2100
     catatgccgt tggaattctt agtcaatttc catttttatt cgccctgggc ggaaccattt      2160
     tatgaatgct tcttttctag tgtaagcctg aatgctatta gggataatat gttaaatgtt      2220
     aattgggctt ctgttttcct tcgcatccta gtgtagacac gtcctataat gttttcctgc      2280
     atacggtccg tcgtattatt ggtagcaatg cttccaaaag ggtgcatggc tcctatagac      2340
     tgccgtggta tacgaagggt cttatgaaat ataagaatct tcgtaataag tactttaaac      2400
     gatttggtaa gacccgggac cctgtagatt gggcaaggta tgtgcaacat aagagggagt      2460
     ttgctttttt aggcaaattt ttgtataacc aatatattgc cgacgttgag agggaactta      2520
     aagtcaatcc caggtctttt tggcattttg gcattttata aagtccaaaa ggtcaacgag      2580
     ctctcttcct tccgttatga acctgggcag cttgagcgct aatacggata atggtatagc      2640
     aaaccttttt gcttctttct ttagctcaaa ttttgagcca tacgcagmtt ggcacagttt      2700
     cgaagtctta aactctatwc cctcggtggt caatattggc acactcgatg tatcggaaga      2760
     ggacattttg gwggcaattg atgagttcga taattctaat aaacccgact gtgatggcat      2820
     ttctgccttc ctgcttcgca actgtgttgt agcgttctgt gaacctctca aaattctatt      2880
     cacaaattcg ctgttaacgg gtcagtttat tggtaagtgg aaagctgcca cgattacgcc      2940
     aatttttaag agaggtacca aaaatctcat ttccaattat agaccaattg ccaaactcag      3000
     caatgtttca aaacttctag agcgaatcat tgccagaaaa atcaccttcc tcatgaaatc      3060
     gtacattagc ccaaatcagc atggttttat gccgggtaga tcaacaacca ctaatctcat      3120
     tgctttcagt aatttctgca ctcgtgtctt tgaaatgcac tctcaagtcg acgttgtgta      3180
     tactgacttt gctaaagcct ttgacaaagt ctcccactgt gctttaatag ccaagctgca      3240
     tcggttgggg attcattcct gcctgctcag ttggtttagg tcgtatcttg agcggcgaga      3300
     gtatgtcgta ttgataaatg gaaagccttc ggacccattc ttggctactt ccggccttcc      3360
     acagggaagt gcacttggtc cacttctgtt cttaattttt attaacgaca tatgtctcag      3420
     cattcaagct tctgagcatc tgctttatgc tgatgatctt aaaatcttcc gatctgtcaa      3480
     aaccttaggc gatagtatcc ttctgcagcg cgacctggat agagttgctc gttggtgcag      3540
     acttaattcg ctcccactca acattagtaa atgttacttt gtttctttta gcaagcgtgt      3600
     ctttaatgtg ctggcctcat attcaataga tggccatcct ctcttaaagc agacggagat      3660
     acttgacctc ggggtcttat ttgactctag atttctgttt gcagggcata tgaatttaat      3720
     attgccaaaa gcctatgcaa tgttcggctt tgttaagcgc aattcatccc aattcaggga      3780
     cccatataca aggctcagtc tgtacgcatt ccttgtgcgc tcgctccttg agtacgcttc      3840
     catggtctgg aatcccaccg gggtcgtcca aatttcgcgc atcgaacgac tccaaagaaa      3900
     gtttctgaaa tttgcactcc agcctctgcc attttccatt ccgatgccgt cctatgagtg      3960
     cagatgtcgc ctcgtgcatc tctcctctct cgaggatcgt aggaccattg cggctcagat      4020
     atttatttat gaccttttag tgggtaacat cgattgccct gacctactta gtaggattag      4080
     cytcactacg cccgccagga gcctcaggac ccatgcaccc tttgcagttg atctccaccg      4140
     gaccaattat ggctttcatg agcccatcag tagggcgctt cggcagcaca atgcgctgcc      4200
     agctgggatg cgctttgact tttgccaggg gaagggagcc gtcagacggt tgcttgtgga      4260
     tttcttcctg ctacataatt aatttattaa tgttattttt tgttatttgt taagatagaa      4320
     ataagttagc ctagccagtt aaggattttt tttgattccg ttggcgaata ataaataaat      4380
     aaataaataa ataaga                                                      4396
//
ID   CR1-3_DSuz  repbase;    DNA;    INV; 5081 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   17-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5081
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 601-601 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~99.6% identical to
CC   CR1-4_DBi from D. biarmipes.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..880
FT                 /product="CR1-3_DSuz_1p"
FT                 /note="PHD finger."
FT                 /translation="MNSYSCSECNAEVTAAQLRGFEAVRCSSLCRRTFHTA
FT                 CVDLPEDAIRLLTNMPNLLWQCDRCVVSNDSYSKIDEVMEELHDLKSLYMD
FT                 LNSKFLKAFPNSTTDNSNVSQRKKVVKPLAPPSSIGRQANHADLIPPAPVS
FT                 TAARNHAKNNRNKRQIVGQAPNCELLEVVPSNKFLHIGRFRAHVKSDSVCE
FT                 YVANKLGVDTATIICKPLVKNGVDVATLEFVNFKLGIPEQHFQTVFSDAFW
FT                 PNPIKISRFIHRDRPIVDGNVLDLHNHHTSESKNPQ"
FT   CDS           826..5001
FT                 /product="CR1-3_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="WERSGFAQSSYIGIKKPPIIGASGVDLTTANFYDPLP
FT                 HLHATYSQCQRPLVSISLTATITLSYAAPSALLSIGRPSLTNQKHYQLDFS
FT                 FLVLSNVHQTLTGEALSPDSVKIPALSALFGDVHSSQSKQHRHQLDLSLSI
FT                 SRDVCQTLSGELLSSYFIKIPALSALFGVVRSSPSNKQQRQLELSLSVLRD
FT                 IRQTLIDEALSSYSITHLPLSALSGDVHASLSKQQQHQLELSLSVSDDDRQ
FT                 TLFGEPLSSYFIKIPALSALVGVVRLSQLNQQQRQLELSLSELCYVRLMLT
FT                 KTQRLELSKFALSDTRDHSIISLLPRSSLTLRNCLNFSSTALCGSSRWQHQ
FT                 QQLCPSLPNLDRYALLTATLPSLLRTSCSLLKVSSKLRECIDPSLHEKIRI
FT                 KNTTLLKAICGPTTLGTHEQILPRALDYDALNANPEIVDRAIVSTAPLKIY
FT                 FQNISGMRTKAEQVYLATSQCEFDVIVLVETWLNINFYSNEFFDSNLYHVF
FT                 RKDRDSTKTHCARGGGVIVAVRCNLRCLSIGLLIEDTLLDQVAVSIIGESE
FT                 SLQIVVSYIPPNGSYKLYKAHLENITDIYNNLQDHQHICVIGDFNLSSLVW
FT                 SQDPEHHSSLPSNIHQPHEILFIDDIFSMGLIQVNNIFNNLHKILDLVFLS
FT                 ADINFSLVQCSSPISNCDIHHRPLLLGINFYSFAPSAEYSPRFIFNETSLC
FT                 AIRNEISAINWESVLSHVSLESCYDTFLVVILNIIKNNARERVHNSFKLPW
FT                 YTKGLKKLKNLRNKFYKRFLVTQDPGDWNRHLQHKREFEFLNKFLYNQYIA
FT                 SVENGLKSNPNSFWRFINSKKSASSVPSAMFLGNLSSHSNTETANLFASYF
FT                 KANFEPTAAWNDSQTLNAITPLLNLGSLTVLEENIHRAVEDVDESYTPDCD
FT                 GIPAYFLKHCIEVLCVPLKILFDKSLSSGHFADRWKVASVTPILKSGPKNN
FT                 IANYRPIAKISNIAKLFERIVAHKLSFLVKTYISTSQHGFVAGRSTTTNLA
FT                 VFSNYCIHAFNMRYQVDAIYTDFAKAFDKVSHSALLAKLARLGIHSALLNW
FT                 IKSYLHHRLYRVNINGKFSDSYLATSGLPQGSAMGPLLFIIFINDVRFCLS
FT                 SECLLYADDLKIFKSIKLATDSQLVQHDLVSLSSWCSRNSLPLNISKCFYV
FT                 TYSKSAYNIVTSYNINGQPLQLRQESLDLGVLFDSKFKFAAHFDYIMPRAY
FT                 AMFGFVKRNASLFTDPYTRLALYFAFVRSKLEYASLIWNPFTTTHGNRIER
FT                 LQKQFLKFALLPLRFLDPTPSYHQQCRLVHLPSLEHRRSILAICFISDLLD
FT                 GSIDCPELLSKVGFHAPPRQLRNFDPFFLELRRTNYSKNEPLYRALYESNA
FT                 LPIDMQLDYFSSKSILKHRLVNYFVNFST"
XX
SQ   Sequence 5081 BP; 1413 A; 1128 C; 971 G; 1569 T; 0 other;
     tcagtctctg attagcattc gttgtagtca gacgtgtttt cttttcgcta tgaattctta        60
     ttcgtgctcc gagtgcaatg ctgaagttac agcagcgcag cttcgcggtt ttgaggcggt       120
     tcgttgctca tcgctttgtc gtcgtacttt tcacactgca tgtgttgatc tcccggagga       180
     tgctattaga ttattaacaa atatgccgaa tctactctgg cagtgtgatc gctgtgttgt       240
     gagtaatgat tcatactcca aaatcgatga agtaatggaa gaacttcatg acctgaagag       300
     tctatacatg gatttaaatt caaagtttct gaaggctttt cccaattcta ccactgacaa       360
     tagcaatgtc agtcagcgta aaaaagtggt gaaaccattg gctccacctt cttcaattgg       420
     tcgtcaagcc aaccatgcag acctgatacc ccccgcacca gtttctactg ccgccaggaa       480
     ccatgcaaag aataacagga acaagaggca aatagttggt caagctccta attgtgaact       540
     tctcgaagtt gtgccgagca ataaattcct tcatattggt agattcagag cgcacgtaaa       600
     atctgattct gtgtgtgaat atgttgcaaa taagctaggt gtggataccg ccaccataat       660
     ttgcaagcct ttagtcaaaa atggtgtaga tgttgctaca ctggaattcg tcaattttaa       720
     attaggaata cctgagcagc actttcagac tgtgtttagt gatgcgttct ggcccaatcc       780
     aatcaagatc agtcgattca tccacaggga taggccgatt gttgatggga acgttctgga       840
     tttgcacaat catcatacat cggaatcaaa aaacccccaa taatcggcgc ctctggtgtc       900
     gatttgacta cggcaaattt ttatgatcct cttcctcatc ttcatgctac ttattcgcaa       960
     tgtcaacgtc cgctggtttc gatatcgcta actgctacca ttactctctc atacgccgct      1020
     cccagtgcac tcttaagtat tgggcgcccg tcactcacaa atcaaaaaca ttatcagctg      1080
     gatttttcct ttcttgttct gtctaacgtt catcaaacgc tcactggaga ggcgttgtca      1140
     ccagattccg ttaagattcc cgctctaagc gctctcttcg gagatgtgca ctcatcacaa      1200
     tcaaagcaac atcggcatca gctggatttg tcgttgtcta tttcgcgcga cgtttgtcaa      1260
     acgctctctg gagagctgct ctcatcatat ttcatcaaga ttcccgctct aagcgcgctc      1320
     ttcggagttg tgcgctcatc accgtcaaac aaacaacaac gtcagctgga gttgtcgttg      1380
     tctgttttgc gcgacattcg tcaaacgttg atcgatgagg cgctctcatc atattcaatc      1440
     actcatctcc ctctaagcgc gctctctggg gatgtgcatg catcactatc aaagcaacaa      1500
     caacatcagc ttgagctgtc gttgtctgtt tcggacgacg atcgtcaaac gctctttgga      1560
     gagccgctct catcatactt catcaagatt cctgctctaa gcgcgctcgt cggagttgtg      1620
     cgcttatcac aattgaacca acaacaacgt cagctggagt tgtcgttgtc tgaattgtgt      1680
     tacgttcgtc taatgctcac aaaaacccaa cggctggagc tttcaaaatt tgctctgagt      1740
     gatactcgtg atcacagtat catttcctta ttaccgcgct cctctctgac gctacgaaat      1800
     tgcttgaatt tctcatcgac tgctttgtgt ggctcttccc gatggcagca tcaacaacaa      1860
     ctttgtccat ctctccccaa cttggataga tatgctctgt taacggcgac attgccatcg      1920
     ctcttaagaa ctagttgctc tttactaaaa gtatctagca aacttaggga atgcatcgat      1980
     cctagtctgc atgaaaaaat tcgtattaaa aacactacat tactgaaggc gatctgcggg      2040
     cctacaacat tgggaacgca tgaacaaata cttcctaggg cattggacta tgatgcctta      2100
     aatgcgaatc cggaaattgt tgatcgtgct attgtgagta cggccccact aaaaatttat      2160
     tttcaaaaca tctccggaat gcggacaaag gcggagcaag tataccttgc cacatcccaa      2220
     tgcgagtttg atgttatagt tttagttgaa acttggctca acataaactt ttactcaaat      2280
     gaattcttcg actccaattt gtaccatgtg ttccgcaaag acagagatag cacgaaaacc      2340
     cactgtgcta gagggggtgg tgtaattgtt gctgttcgct gcaatttgcg ctgcttgtca      2400
     attggacttc tcattgaaga tacccttctt gatcaagttg cggtgtcgat aattggagaa      2460
     tcggaatcgc tgcaaattgt ggtgtcatac ataccaccga atggttcata taaactttac      2520
     aaggctcatc tggaaaacat taccgacatc tacaataatc tgcaggacca tcaacatatc      2580
     tgtgtgattg gagactttaa tctatcatcc ctcgtttggt ctcaggatcc ggagcatcac      2640
     tcttcactgc caagcaacat acatcaacca cacgagattc ttttcatcga tgatattttc      2700
     agtatgggct taatacaagt caataatata ttcaataact tacataaaat tttagactta      2760
     gtattcctta gcgctgatat taacttttct ttagtccaat gtagttcacc tataagcaat      2820
     tgtgatatcc atcatagacc attgctacta ggtataaact tttacagttt tgcgccttca      2880
     gctgaatatt cacctagatt tattttcaat gaaaccagcc tttgtgccat cagaaatgag      2940
     atctctgcca ttaactggga gtcagtttta tcacatgtca gtttggagtc gtgttatgac      3000
     acatttttag ttgttatttt aaacatcatt aagaacaatg ctcgagaaag ggtccacaat      3060
     tcgtttaagt tgccatggta tacgaaaggt ttgaaaaagc ttaaaaatct tcgaaataaa      3120
     ttctataaaa ggtttttagt tacacaggat cctggtgatt ggaatagaca cttgcagcac      3180
     aaacgagaat ttgaatttct aaataaattt ctttacaatc agtatatagc gagtgttgag      3240
     aacggcctaa aaagtaatcc caactctttt tggcgattca tcaattcaaa gaaaagtgct      3300
     tcttcagttc catctgctat gttcctaggg aatttatctt cccattcaaa tacagaaact      3360
     gcaaatctct ttgcctctta ttttaaagct aattttgagc caacagcagc ctggaatgat      3420
     tctcaaacct taaatgcaat cactcctcta ttgaatttag gtagtttaac cgtgctagaa      3480
     gagaatattc atagggctgt ggaagacgtg gatgaatcgt acactccgga ctgtgatggg      3540
     attccggcct actttctgaa acattgtata gaggtgctat gcgttccact aaaaattctg      3600
     tttgataaat cactttctag tggacacttt gcggatagat ggaaggtcgc atccgtgact      3660
     ccaattttaa aatcagggcc gaagaataac attgccaatt acaggcctat agcaaagatc      3720
     agtaatatcg ctaaactctt cgaacgcatt gttgcccata aattatcatt tcttgtaaaa      3780
     acatatataa gcacttctca gcatggtttt gttgcaggtc ggtcaactac gactaatctt      3840
     gccgttttca gcaactattg cattcatgcc tttaatatgc gatatcaggt tgatgctatt      3900
     tacactgatt ttgcgaaagc ctttgacaaa gttagccaca gtgccctact ggcaaaactg      3960
     gcccgcttgg gtatacattc ggcactacta aattggataa aatcatattt acaccatcga      4020
     ctttatagag ttaatattaa tggaaaattc tcggattcct atttggcaac ctctggcctc      4080
     cctcagggga gtgctatggg acctctgctt ttcatcattt tcattaatga tgtgaggttc      4140
     tgtctatctt cagagtgtct cctgtatgca gatgatttaa aaatttttaa gtctattaaa      4200
     ttagcgacag actcacaatt ggttcaacat gacttagttt ccttgagctc ttggtgtagc      4260
     cgaaattcgc ttcctcttaa cataagcaag tgcttctatg tcacttacag taaatccgca      4320
     tacaatatcg tcacatctta taatatcaat ggtcaacctc tacaactgcg gcaggaatcc      4380
     ttggatctag gagtgttgtt tgactcaaaa tttaagtttg cagcacactt cgattacatc      4440
     atgcccaggg cctatgctat gtttggattt gtgaaacgga acgcatcgct attcacggat      4500
     ccctacacca gacttgcgct ttattttgca tttgtccgat ctaaactaga atatgcgtct      4560
     cttatttgga atcccttcac taccactcat ggaaacagaa tagaacgtct acagaaacag      4620
     tttttgaaat tcgcgttgtt gccgctaagg tttttagacc ctaccccttc ataccaccag      4680
     caatgtaggc ttgttcacct accatccctt gagcatcgta gaagtatcct cgccatttgc      4740
     ttcatctctg atttgttgga tggtagtatc gactgtccag aactgctatc gaaagttggt      4800
     tttcacgccc cgcctaggca acttcggaat tttgatccct ttttcctcga gctgcggcgg      4860
     acaaattatt ccaaaaacga gcccctctat agggccttat atgagtctaa cgcacttcca      4920
     attgatatgc aattggacta cttctcaagt aaatcaattc ttaagcatag gttagtcaat      4980
     tattttgtaa attttagtac gtaagataag ttgttgaaat gttcaagtag ccagtaaagg      5040
     aattccgttg gcgaaatgaa ataaataaat aaataaataa a                          5081
//
ID   CR1-3_DT    repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4561
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1694-1694 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~95% identical to CR1-3_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           617..1660
FT                 /product="CR1-3_DT_1p"
FT                 /translation="MSVVICSAKKCEFNGVIIGDNYLSCWLCDNCAHVKCA
FT                 GMGQNGRVVDLILKRCGLTWFCPTCLVLTQEMKAFMRQTRNALAEFRKQLT
FT                 SSFEIFSTMETQFLDCKLLNESPKRKIANNNKNSLQIPSPCTAAVGIPSPI
FT                 SASLNSILAVNNSAGLGTSGLQSSFAFNNTSPGSEPGASGLQPNQNTGTTA
FT                 EGSLTPQQLVPGPGSLHLNPDLATTIAPAALPSSQPAANQLLSAXPLSGVA
FT                 PRSNAADLPLRGIAPNRSVFVSRLNPEATADCVKNYLCQKLGAQPSSISVF
FT                 KFNFKQPRDISSFKITLPESMFSNALDPTIWPEHTIMHEYIRKGASQDPNS
FT                 VDAKN"
FT   CDS           1651..4491
FT                 /product="CR1-3_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CKKLNRSISVAYQNVRSLLGKLKRVYSNSTLLDFDII
FT                 AITETWLNSTVYDQEIFVNKFSIYRLDRPTRGGGVLIAVLNSHSSELFPYD
FT                 NIHSIEFIAVKITTDKCNVFLTCSYIPPGSDPAIYLHHLSAISVVSLSVGD
FT                 ADQLIVLGDFNLPHLSWLPNSDSNILFPENQHEFVDGLTKLSLGQVNSIKN
FT                 SRERILDLIFVSDVSVATVSRCDPVSTPEDLYHPALCLNVDINFETTNQSA
FT                 PQRVKCFRKTDYIGLNSHLDRLNWSTLYSFTDLDSAVLWFNESVCSALDTF
FT                 VPEVSVANSLKPPWFSRHLSYLKNTKSRLFKKYKKSGSPSDFSQYVIARSN
FT                 FVISNNQCYAEYIAECRQNIRSDPKKFYSFVNSKRKSNVFPPCLHLGNISE
FT                 SSDINISNLFATFFQSTYSSLSFNTSTSYPYALPHINNIHIPPFTISDVLN
FT                 SMLTIDESFSAGPDKIPSCIIKQCAASLCGPITFLFNLSLQLSLFPSIWKT
FT                 SFLIPLHKKGSRTDVGNYRGIAKLSAIPKLFERLVTCQIQHMCSSIISTSQ
FT                 HGFVKKRSTSTNLLEFSSLIHCSFLQKKQTDVIFTDFSKAFDSVNHSLLLH
FT                 KLSLIGFPPYLLDWISSYLSNRSQRVLFKNEVSSLVNVTSGVPQGSHLGPL
FT                 LFILFINDLPQVMSHCTTFMYADDVKICMSFSNLSSHLLIQSDLNNFQAWA
FT                 STNLLSLNYSKCKTMSFSRTTAHTTSYTLGNSLLERVEKINDLGVLFDQKL
FT                 CFNSHISVIVTKATGVLAFIKRWAKEFNDPYTTKSLYVSLVRPIMEYCSEV
FT                 WSPQYVYQQNLIESVQKQFLIFALRNLNWDPDRHLPPYLSRLKLIDLNTLK
FT                 HRRFCNGVIFIHKLLSGAVYSPTLLRDINIAVPSRYTRAFRPIRLPIVRSN
FT                 FSLHEPFRVLCTNYNLAYQCISFESSIDFISPQIYCYLDSLNV"
XX
SQ   Sequence 4561 BP; 1207 A; 1090 C; 762 G; 1497 T; 5 other;
     gcatcgacac tgaccggttg tgttttatct gagctcttga aattaccttt caatcgtggt        60
     tacaccgaac gtatataatc ctaaaattgg agaatatcwt tctaaamccc cgcttaacac       120
     ttcacgcacc gtatataaac attacawcgc gccaataagc atatttaatt gaatttcaat       180
     tcatcgctgt gccacaaagg gcttcgctgg tgctttgttt ttgttctcta tcgccgtttg       240
     tcgcgtctgt tctttacacc cgctcgccaa ttgctctctc aagtgtccta acggtcctct       300
     ctccgtgcac ttcactttga gcgctgcgtc tctctcatcg ccttgcttgc tctggatctg       360
     aattggctct ccgaatcgac ggctctccca tcaastattc taacggtcct ctctccgttt       420
     tcttcgagtg ggtcgcctct ctcatcgcct tgcttgctgc ggatcttcga attggctctc       480
     cgaatcttcg gctcccccat caccgtatct gccactacct ggagttctgc acaactcttt       540
     aatctcccac tgcctgctct tctgcacgct tctcttaact gcctgttaac tgcacagtgt       600
     cccaacaatc actaaaatga gtgtcgtcat ctgttccgca aagaaatgcg agttcaatgg       660
     tgttatcatt ggagataatt atttgtcttg ttggctttgt gacaattgcg ctcatgtaaa       720
     atgcgcagga atgggtcaaa acggccgtgt agtcgatttg atcttgaaga gatgcggctt       780
     aacttggttc tgccctacct gccttgtact tactcaggag atgaaagcct tcatgaggca       840
     aacaaggaat gcgcttgcag aatttcgtaa gcagctgacc agcagctttg aaatcttctc       900
     tactatggag acgcaatttc tcgactgtaa actgcttaac gaatcaccaa agcgaaagat       960
     tgcgaataat aataaaaatt cgcttcaaat tccatctccc tgcactgctg cagttggtat      1020
     tccgtcacct attagtgcga gcctgaattc aatcttggct gtcaacaact cagctggact      1080
     aggcacatcg ggattgcagt ctagtttcgc ctttaacaac acctcacctg gatctgagcc      1140
     tggagcatct ggattgcagc ctaaccaaaa taccggtacg actgcagaag gctctttaac      1200
     tcctcaacag ctagtacctg gccctggctc actacattta aacccagatc ttgctactac      1260
     aatcgcaccg gccgcgcttc cttcgagcca acccgctgct aatcaactcc tcagtgctak      1320
     gccactatca ggcgtggctc ctagatccaa tgcggcggat ctacctctca ggggcattgc      1380
     acctaatagg tcggtctttg tttctcgtct caatccggaa gccactgctg attgtgttaa      1440
     aaactacctg tgccaaaaat tgggtgcaca acctagtagt ataagtgtct ttaagtttaa      1500
     tttcaaacaa ccacgtgata tctcttcttt taaaattact cttccagaat ctatgttttc      1560
     taatgcttta gatcccacaa tttggccgga gcacactata atgcacgaat acatccgcaa      1620
     aggtgcatct caggatccca attctgttga tgcaaaaaac taaatcgctc tatatctgtt      1680
     gcttatcaga atgttcgtag tctattgggg aaactaaaaa gagtttactc taacagcacc      1740
     ttgctggatt ttgacattat tgctataact gaaacctggc tcaactcaac tgtttatgat      1800
     caagaaatat tcgtcaacaa gttttctatt tacagattag accgcccaac tcgtggtggt      1860
     ggcgttctaa ttgcggtact aaactctcat tcttctgaac tttttcctta tgataatatt      1920
     cacagcattg aatttatagc agttaaaatt actaccgata aatgtaatgt atttcttact      1980
     tgctcctaca taccccctgg ctctgatcct gctatttatc ttcatcacct ttcagctatt      2040
     tctgtcgttt ctttatctgt tggtgacgcc gatcaactta ttgtcctggg tgattttaac      2100
     ttacctcatc tttcatggct tcctaactca gactctaata ttctattccc tgaaaatcaa      2160
     catgaatttg tagatgggtt aactaaattg tcacttggac aagttaattc cataaaaaac      2220
     tctagagaaa ggatccttga cctaattttt gttagtgatg tgtctgtggc aaccgtttcc      2280
     agatgcgatc ctgtgtccac accggaagat ttgtaccatc ctgctctttg tctaaacgtt      2340
     gatataaatt ttgaaaccac gaatcagtct gccccacaac gcgttaagtg ttttaggaaa      2400
     accgactata ttggattaaa ttcccacttg gaccgtctaa actggtcgac cttatactct      2460
     ttcactgacc ttgatagcgc agttctttgg tttaatgaat cggtttgctc tgccttagat      2520
     acctttgtcc ccgaagtttc cgttgcaaac tcattaaagc ctccttggtt ctccaggcat      2580
     ctgtcctacc tcaaaaacac aaaatcgcgt ctttttaaaa aatataagaa atctgggtcc      2640
     ccctcagatt tttcccaata tgttattgcc cgatctaatt tcgtaatatc taataatcaa      2700
     tgttatgctg agtatattgc tgaatgtaga caaaatatta gatctgaccc taaaaaattc      2760
     tattcctttg taaattctaa aagaaaatct aatgtatttc cgccatgtct ccatttgggt      2820
     aatatttcag aatcttccga tattaacatt tctaacctct ttgcaacttt ctttcaatct      2880
     acatactctt ctctctcctt taacacatcg actagttatc catacgcttt gcctcacatt      2940
     aataatatcc acatcccacc ttttacaatc agtgacgttc taaatagcat gttgactatt      3000
     gacgagtctt tctctgctgg tcctgataaa attccgagtt gcataatcaa acagtgtgct      3060
     gcatctcttt gcggcccgat cactttccta tttaacctct cactgcaact gtcactcttt      3120
     ccaagtattt ggaagacatc ttttttaatc cctcttcaca agaaaggctc tagaactgac      3180
     gttggtaatt accgaggtat tgccaagctg tctgcgatcc ctaagctttt cgaacgtcta      3240
     gtaacctgtc agattcagca tatgtgtagt tcaattattt caacatccca acatggattt      3300
     gttaagaaac gttctacttc tacgaatctt ctcgaatttt cgtccttaat tcattgcagt      3360
     tttctccaga agaaacaaac agatgtcata ttcaccgatt tcagcaaggc gttcgactcg      3420
     gttaaccact ctttacttct tcataaacta tctcttattg gatttcctcc ctacttactt      3480
     gattggattt cgtcatactt gtcgaacaga tctcaacgtg tattgtttaa aaacgaagta      3540
     tcttctttgg taaatgttac ttcaggcgta ccacagggta gtcacttggg accattacta      3600
     ttcattttgt ttattaatga cctcccacag gtgatgtccc actgcaccac ttttatgtat      3660
     gcggatgacg tgaaaatctg tatgtcgttt tctaatttaa gttcacatct tcttattcag      3720
     tctgacctca acaatttcca ggcttgggcc tcaacaaact tgctatcact gaattattca      3780
     aaatgtaaaa caatgtcgtt ctcccgcact actgcccaca caacctcgta cacccttgga      3840
     aactccttat tggagcgtgt ggagaaaatt aatgatcttg gtgtgttgtt cgatcaaaaa      3900
     ctttgtttta atagccatat ctcagttata gtcactaaag ctaccggcgt cttagccttt      3960
     attaagcgtt gggcaaaaga gtttaatgat ccgtatacaa ctaaatcgct atacgtaagc      4020
     ctagttcgcc caattatgga gtactgttct gaggtatgga gtccacaata tgtataccaa      4080
     cagaatttaa tagaatcggt tcaaaaacaa ttcttaatat ttgctttgcg taaccttaat      4140
     tgggatcctg atcgacattt accaccttat ttgtccaggc taaaactgat tgacctaaac      4200
     actttaaaac accgcagatt ttgtaacggt gtaatattta tacataaact gctgagcggt      4260
     gcggtgtatt ctccaacttt gctgagagat atcaatattg cagtcccctc aagatacact      4320
     cgtgccttcc gtcctatccg tctaccaatt gtgagatcta atttttccct tcatgaacca      4380
     ttccgtgttt tatgtactaa ttataattta gcctatcaat gtatatcctt tgagtcttct      4440
     attgatttta tatcccccca aatttactgt tacctcgatt cactaaacgt ataaatgtat      4500
     aaattgttaa gttgttaagt tagctgtcca tagttaacta taagccaaat aaataaataa      4560
     a                                                                      4561
//
ID   CR1-3_DWi   repbase;    DNA;    INV; 4621 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   20-JAN-2022 (Rel. 27.01, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_DWi.
XX
NM   CR1-3_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4621
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1957-1957 (2012).
XX
RN   [3]
RP   1-4621
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-JAN-2022).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98% identity.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           571..1575
FT                 /product="CR1-3_DWi_1p"
FT                 /translation="MSVCCKYNCNNPSKTSEDFLYCWLCDNVMHFKCAGYT
FT                 VKVRDSIAQGGGLKWGCDSCRGLELEMRSFMKRTGDAFKTLSAGVHKLQEE
FT                 LLAMEVQFRSSKLLIESPTRKRARFQGASLSPSAHSSLPVPAFDIDPMSPN
FT                 AQQLISFRSPALAGVESLPISPGDSIPPTNTISVVVSEPSGQTSVSRNIAN
FT                 KVVTRGASKVLAASAAAASAVAATAVPSIPSSLVVVPPKKQIFISRLDPNT
FT                 TSEEVIAYIQGKVQAPNIAVEKFRFSYTRDISSFKIGVSPDLFGQICHKDF
FT                 WPEHLVVKEYTIKKKNRPPISLLPASVNNVPSGSSAPVGESKN"
FT   CDS           1533..4406
FT                 /product="CR1-3_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RSFRLVCTCWRVKKLISSLTLAYQNVRGLKTKLSKLY
FT                 VDSLAFDFHILAFTETWLKPDIADASIFPSKYLIYRHDRTIRNGGGVLIAV
FT                 DSAFSSEIVQSSNQEIEFVCVKISFNSFSAYITCSYIPPQSDLAVYTHHLE
FT                 AIQLISSYLSDKDLLVVLGDFNLPEIAWTLSFDSLLLLPSLSHCFIDGLLE
FT                 LSLTQINPVRNSRNRSLDLVFVLDSSNCDVSRTDPLVIPEDNFHPTLDITI
FT                 DLPFGVMSRHNNSMPPTRCFRKTNFTKLKKLLLTNDWTYLYTCTDMDSAIS
FT                 VFYKTLESFFDVCVPRVTLGWSDRPPWFSRELCNLKNVKSRCYKRFKKSGK
FT                 ASDFSLYVVARSNFMVLNSHCYKDYLQRCKLRFSRDPKQFYKFVNVKRKTS
FT                 VHPSYLSFENNKADNDQAIADMFADFFKTTYSSSIYQANPPYPHHLQSSNC
FT                 ILDPVFDESSVLSVLSSVKPIYAPGPDGIPGCVLRFCAEALCKPILKLFTL
FT                 SVTSSAFPPIWKESYIIPLHKKGKKSEASNYRGISKLSAIPKAFEKIITSQ
FT                 LQHFCSSIISSSQHGFKKRRSTTTNLLEFTSHSIKGFKTAVQTDVIYTDFS
FT                 KAFDSVNHTLLLYKLNALGIPSLLLDWILQYLSKRTQKVLFKSSFSKTIQV
FT                 TSGVPQGSHLGPLLFTLFINDLPLVVSHSRVLMYADDVKLYLSFKDISSSC
FT                 LLQSDLNDLQSWCETNLLNLNGSKCKVMSFYRCTPYLATYYLNDTALERLD
FT                 IINDLGVLMDHKLTFNPHISATVSKAMNVLGFVKRWSKEFDDPYTTKILYT
FT                 SLIRPILEYGSCIWSPQYETHQSKIESVQKQFLLFALRGLNWDRNVNLPSY
FT                 SSRLLLINLPSLINRRVMLGAIFIHKLLIGEIDSPELLNQLNLSVPRRPTR
FT                 NFIPLSLKHCSSNYSLHEPFRVLCSDYNLLYPVIRSEASLSLVKTSILAHL
FT                 ARN"
XX
SQ   Sequence 4621 BP; 1179 A; 994 C; 846 G; 1602 T; 0 other;
     catattgtca ctcatcgaag tcggtcgtgt tttttttgcg ctctcgctta atttttgtct        60
     ttcattcttt cgtgaagcta atttataata ttcaatttaa attcattgcc ttactaattc       120
     ttaataaatc gctatactca tcgcgaagtt tgcgttaaat ttacaaacat ttatataaat       180
     ttattatcaa aactttaaca aacgcaaata taattttgtt gttgcgctgc ttagtttttg       240
     atttcgttct attttttgct cccacccgcg ctctcaattt acagttcata gtttgttttt       300
     gtttgtgtgg tgttggtgct ctctattctt ttgtttctct tttgatcgcg ctcgcggccg       360
     ttaacttcgc gctggtgaca agtttttgtt gttgtgtgtt ttattacaga taagtacaaa       420
     tattctctct ttttgttttc tctttctaat ttgcatattg cagttagctt ttgccttgct       480
     ttgtatacgt ctctcttaac atatacattt ttcccatttt atttacatat tgatttataa       540
     tttgtttttg tataaatcaa ttatttaata atgtctgtct gttgcaaata taattgcaat       600
     aatcccagca agaccagtga agactttctt tactgttggc tgtgtgacaa tgtaatgcac       660
     tttaaatgtg ctggttacac agtcaaggtg cgggatagta ttgcacaggg tggcggcctt       720
     aaatggggct gtgattcgtg tcgtggcttg gagctcgaga tgcgaagttt tatgaaacgg       780
     actggggatg catttaaaac cctgtcagct ggcgttcata agctccaaga ggagcttttg       840
     gcgatggagg ttcaattcag aagttctaaa cttttgattg aatctccgac gcgaaagagg       900
     gccaggtttc agggcgcgtc cctcagtccg tcggcacatt cgtctctacc agttccggct       960
     ttcgacattg accctatgtc accaaatgca cagcagctga tatcgtttag gagtccggct      1020
     ttggcaggtg tggagtctct tcccatttcc cctggagaca gtatcccacc tactaacacg      1080
     atatcggttg tagtttccga accgtccggg caaacatccg tttccaggaa tattgccaat      1140
     aaagtagtta caagaggagc tagtaaagtg ctggctgctt cagctgctgc tgcgtctgct      1200
     gtagccgcta ctgctgtgcc tagtattcct agttcccttg ttgtagttcc acccaaaaag      1260
     caaattttta tttcgaggct tgatcccaat actacttctg aagaagtcat agcctacatc      1320
     cagggcaaag ttcaagcacc aaacattgct gtggaaaagt tccgtttttc atatactcgg      1380
     gacatttcgt cctttaaaat aggtgtctcc ccagatcttt ttggccaaat atgtcataaa      1440
     gatttttggc cggaacacct tgttgtaaaa gagtatacaa taaaaaagaa gaatcggcct      1500
     ccgattagct tgctacctgc ctctgtgaat aacgttcctt ccggctcgtc tgcacctgtt      1560
     ggcgagtcaa aaaactaatt tcgtccctaa ctctggccta tcagaacgta cggggactaa      1620
     agactaaact gtctaaactc tatgtagata gtctagcttt tgactttcat attcttgcct      1680
     ttactgagac ttggctgaag cctgatattg ccgatgcttc aattttcccc tcaaaatatt      1740
     taatatatag acatgatcgg actatccgta atggtggtgg cgttttgatc gctgttgact      1800
     cggcgttctc gtctgaaatt gtccagtcct ccaatcagga gattgaattt gtttgtgtta      1860
     aaatttcgtt taattctttt tctgcctata ttacttgttc gtatattcca ccacagtccg      1920
     acttggcagt atacactcac catttggaag ctattcaact tatttcctca tatctctctg      1980
     acaaagactt gctcgttgtt ctgggagatt ttaatttacc tgagattgcc tggacccttt      2040
     catttgactc tttattactg ttgccctcct tgtcacattg tttcatagat ggtctgcttg      2100
     agttgtccct aactcaaata aatcctgtcc ggaatagtcg taacagatca ctagatctgg      2160
     tatttgtgtt ggattcttcc aactgcgatg tttccaggac tgatccctta gttatccccg      2220
     aagacaactt tcatccaact ctggatataa ccattgacct tccttttggt gttatgtctc      2280
     gacataataa ctcgatgcct ccaacccgat gttttcgcaa gacaaacttt actaaactta      2340
     aaaaactctt gttaactaat gattggacat atctgtatac ttgcacggat atggactctg      2400
     ccatttctgt cttctataaa actcttgagt cgttctttga tgtttgtgtc ccgcgtgtga      2460
     ctctaggatg gtctgataga cctccttggt tctcacgtga gttatgtaac ttgaagaacg      2520
     taaaatcgag atgttataaa agatttaaaa aatccggtaa agcatcggat ttttccctat      2580
     atgtagttgc tcgatcaaat tttatggtgc tgaattcaca ttgctataag gattatcttc      2640
     agcgatgtaa actcaggttt tctcgcgatc ctaagcaatt ttataaattt gtaaatgtta      2700
     aacgtaagac atcagtgcac ccgtcttact tgtctttcga aaacaataaa gctgacaatg      2760
     atcaggcaat tgccgacatg tttgctgatt ttttcaaaac aacttattcc tcttcgattt      2820
     atcaagcaaa tcctccttat cctcatcact tgcaatcgtc taattgcatt ttagaccctg      2880
     tgtttgatga aagttcggtt cttagcgtgc tcagttccgt caaaccaata tatgcacctg      2940
     gccctgatgg aataccaggc tgcgtattaa ggttttgcgc ggaggcccta tgtaagccaa      3000
     tacttaagtt gtttacactg tccgtcacat cttccgcctt cccgcctatc tggaaggaat      3060
     catatattat tcctcttcat aaaaagggga agaagtccga agcctccaat tataggggta      3120
     tttctaaatt gtctgccata cccaaagcat ttgagaaaat aataacatct caattgcagc      3180
     atttttgtag ctcaatcatt tcgtcatccc aacatgggtt taaaaaacgt agatcgacaa      3240
     ctactaacct attagaattt acatctcact caatcaaagg gttcaagact gccgtgcaaa      3300
     ctgacgtcat ttatactgac ttcagcaagg cctttgactc tgttaatcat actctgcttt      3360
     tatataaatt aaacgcactt ggcatcccca gccttttgct agattggatt cttcaatatc      3420
     tttctaagcg tacacaaaag gtcctcttta agtcttcatt ttctaagacc atccaagtga      3480
     cctctggagt acctcagggt agtcatttgg gtccattgct attcactctt tttataaatg      3540
     atcttccatt ggtagtgtca cattctcggg tgcttatgta cgcggatgat gtcaagcttt      3600
     acctcagttt taaagacata tcgtcttctt gcctacttca atcggatctt aatgatcttc      3660
     agagttggtg tgaaacaaac ctattaaacc ttaacggctc taaatgtaaa gttatgtctt      3720
     tttatagatg cactccatac ttagcaactt attatcttaa cgacactgcc ttagagcggt      3780
     tagatattat caatgattta ggtgttctta tggaccataa attaactttt aatcctcata      3840
     tttctgctac agttagtaaa gctatgaatg ttcttgggtt tgtgaaacga tggtcaaaag      3900
     agtttgacga tccgtacaca accaaaattc tgtatacttc tttaatccgt cctatcttag      3960
     agtacggatc ttgcatatgg tcacctcaat atgagacgca ccaaagtaaa attgaatctg      4020
     ttcaaaagca atttctgctt ttcgctcttc gcggtctaaa ttgggatcgc aatgtcaatt      4080
     tgccatcata ctccagtagg cttcttttaa tcaatcttcc ttctttaatt aatcgtagag      4140
     taatgcttgg tgctatcttt attcataaac ttttaatagg tgaaatagac tctcctgagc      4200
     tattgaacca gttaaaccta tctgtacccc gtagacctac tagaaatttt attcctctat      4260
     ccttaaaaca ctgtagttct aactattctt tgcatgaacc ttttcgagtc ctatgttctg      4320
     actacaatct tctgtatccc gtaatcagat cagaagcctc tctttccctt gtgaaaactt      4380
     ctattttagc acatttagct cgtaattagc tgtagttaat catattttta attgtttgtc      4440
     cgttttattt gtatttgtcc acgcgatcgt gccgtccgat atgcggctgc gccccacggt      4500
     cggtcgggcg ggaggtggac agcgctctgc ttgggctcgc gcgaaacagg ctatgtcctg      4560
     gtgtcgtatg ggccacttga acgtacttcg cattgtacgc gtcaacgtcc agacaataaa      4620
     a                                                                      4621
//
ID   CR1-3_Hmel  repbase;    DNA;    INV; 4686 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4686
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1549..4473
FT                 /product="CR1-3_Hmel_1p"
FT                 /translation="LVFSGVGMLLSSSLFLKFDSNIKLYYQNSRGLRTKTH
FT                 SFLQAVLCNNYDIIVLTETWLNDSVSSSELFDERYVVYRRDRSNAELIHKN
FT                 EGGGVLVAISRQIHSKRIFHWESKLEDLWVIIEIPISHSLRRVALCVVYLP
FT                 PPVHSSMLDYFIDNSRLVLEDCDCSCILGDFNLPSINWNLLNDTSCEYXVP
FT                 GLCQPLIDLINIYGLKQHNSVVNKSDRILDLVLSNIPTCIVRPSHSTLSNI
FT                 DQLHPPLDVDXSFVGQTKLPFNRESFKLNFHKADXINILKELKKCEWVQIF
FT                 GDVNDVNVILSKFYNTIGAIIEKFVPKQXXKKSRYPPWFSSNLRHRLKEKY
FT                 NLRRRFQKYKNPMDELELQLLDSRCTRLAIDCYNKYISDSEKNILKNSKYF
FT                 WTYVKAKRGGTSSYPLHMTDGSVTASDGKQICEMFASYFASVFINXTTQNS
FT                 DYRDSLEYMEKCSRFITLPIIDSETLLGKLKSLDENKGAGPDGIPPVFIKR
FT                 CAIYLVEPLLIIFNMSLQTGIFPAEWKKARVVPIHKANNVDLISNYRPISI
FT                 LSTLAKVLESLVCPSVRFHFKQSLSIQQHGFVPSRSTXXNLVDLTENIAEA
FT                 LDSHKQVDVVYTDFSKAFDRLPHDLLMQKLSAYGISGIFLQWIKSYLENRT
FT                 FSVVVNGFYSNSRKATSGVPQGSHLGPILFTMFVNDILNAIKFSKTFMYAD
FT                 DLKLSKVIDTVXDSIMLQKDLDELLNWCRHNKMDLNPNKCFFVRYYRKRNI
FT                 ISFQYSIAQNKIKELEQIRDLGVLFDKKLTFVPHIEQIVNRGSKLLGFVLR
FT                 NIKGLRDNRVRILLYTSLVRSILEYCSVVWRPHFASHSLVIERIQKRFLRY
FT                 LLFSNGISKKKLPSYCQQLNHFRMISLEERRRRLDIFFXSKIFTNGIDCPQ
FT                 LLNKFNIRVPARFPRNIITLLYPPPXKTVFGSNSPVPRLCKLVNEYSDLFD
FT                 INADSTSKIRLILNTKSQTY"
XX
SQ   Sequence 4686 BP; 1547 A; 801 C; 830 G; 1483 T; 25 other;
     acacggccta aataatactc cttcacgcaa gttccgcgaa aatatcttat ttaaaattat        60
     ttccactcac aatatctaac aacggcttcg aaaattcagt gtataaagtg tgttaatata       120
     cattagtgat acaaacattg caattaaaat gtgtataata tcgtaaataa cgcaataatt       180
     gcttagattt atatattaat wtttttttgt gacaatttgt gcggtcagtt gaatatttca       240
     ctgccacagt ggtcagagtg catcagcgat cgaatctcac ggttacgcgc taagcagaag       300
     aaccattatc gtatgcagag ctttcgtcga gacgtatgac gtaccctaat cacttcgtca       360
     tagattaagc tctgcagata agacacatgt acgaacaagc aagcatttgc atctgagagg       420
     acaacattat tatcatatta tttactcaaa cttattaaat aataaaaatg tcacggtcac       480
     gatggggttg ttgtttaccg gaagcaggta ataatgatga gtctataaca tgttcaaagt       540
     gtaaaaaacg ttatcacttt gcatgcatat ttcttgacgc aacactagct aatacagata       600
     cgggttggag ctgccctgaa tgttgtcgta attcctctaa gaatgtaaaa aaggatcaca       660
     ctcctattcg caatgtatct actgtgagag gaagtaaaag accagcactt cagtctccgc       720
     ctacaccgga aaatcgcagc ataactcggg atgatttacg tgatgcaata gaagaagtta       780
     tgaatcaaaa aatgcaagaa ttattttcta aaatggaaga tagtattagc aaaattattg       840
     atagaaagat aaaaccgtta gaagatgata taattgaaat tagaaagttt ttgaatttca       900
     ctaacgagaa ttatgaagac atgaaaaata acattgatgc ttttaaggtc agaatatctg       960
     agttggaatc tgaaagagat gagcttggtt ctactgttaa ttctcttaat caaagaatca      1020
     atcaaataga acagcagtcg agacagagta atatagagtt gcaatgcgtg ccggataata      1080
     aaaatgaaaa cctaattaag ataatttgtg atttaggaaa gattgtcggt tgtcaactaa      1140
     aagaaaatga tatactgcgc tgcacccgca ctgcaaagca aaatcaaagc tctccacgcc      1200
     cacgatcaat aattgtacaa ttgtcaacac caagattgcg agacgagctt cttgctgcgt      1260
     ctattaaata taacaaggga aaatctgtag aaaataaatt aaattctgca ctactgggat      1320
     tgcctggaat tagcagaccg atctttgtct gcgaacacct gtctcccatg aacaaggctc      1380
     ttcacgcggc agccaggaag agagcgaagg aagctggata caagtatgtc tggattcgga      1440
     atggcagagt gtttttgagg aaaagtgatg aaaccgaatt tatcgtagtg aaaaatttag      1500
     atatattaaa aaacatttga taatttgttt atttttaagt ttatttaact agtttttagc      1560
     ggtgttggta tgttattgtc cagttctctc tttttaaaat tcgattccaa tataaaattg      1620
     tactatcaaa actcacgtgg attaagaacc aaaacacaca gctttcttca agcggtactt      1680
     tgtaataatt atgacataat cgttctcaca gaaacgtggc twaacgactc ggtttcttcc      1740
     agtgagcttt ttgacgagag atatgtagtt tatagaagag atagaagtaa cgccgaacta      1800
     attcacaaaa atgaaggtgg cggagtcctt gtagcaattt ccagacaaat acactccaaa      1860
     cgtatatttc attgggaatc taaacttgaa gacctctggg tcattattga aattccgata      1920
     tcacattctt tacgtcgggt tgctctctgt gtagtatatt tgcctcctcc ggtgcatagt      1980
     tcaatgttgg attactttat agataattct cgtcttgttc tcgaagattg tgattgcagc      2040
     tgtatcttag gtgactttaa tttacctagt attaattgga atttattgaa tgatacttct      2100
     tgygaatata akgtgccagg tttatgtcaa cctttaatag atttaattaa catatatgga      2160
     ctcaaacagc ataacagtgt agtcaataag tccgacagaa tactcgatct ggtgttatct      2220
     aatattccaa cttgcatagt ccgtcctagt cactcaaccc tcagtaacat tgaccagtta      2280
     catcctcctc tggatgtaga twtttcattt gtagggcaaa craagcttcc gtttaatcgc      2340
     gaatctttya agttaaattt tcataaagcc gattwcatta atattttaaa agaacttaaa      2400
     aaatgtgaat gggtgcagat atttggrgat gttaatgatg ttaatgtwat tctttcyaaa      2460
     ttttataata cyattggcgc tatmattgaa aaatttgttc ctaaacaaaa watkaagaaa      2520
     tctcgatayc cacchtggtt tagtagtaac ttaaggcacc gtttaaaaga aaaatacaac      2580
     cttagacgtc gttttcaaaa atataaaaac ccaatggacg aactagagtt gcagttgcta      2640
     gattcgcgtt gtacacgttt ggccattgat tgctataata aatacattag tgactcagaa      2700
     aaaaatattt taaaaaactc gaaatatttc tggacctacg ttaaagccaa acgaggtggc      2760
     acgagctctt acccacttca tatgactgat ggatcggtga ccgcctcaga tggtaagcaa      2820
     atttgtgaaa tgtttgcgtc atattttgca tcagtattca taaatwatac tactcaaaac      2880
     tctgattaca gagattcytt ggagtacatg gaaaaatgca gtcggtttat aacgctacct      2940
     attatagact ctgaaactct actggggaaa ctcaaaagtt tagatgaaaa caagggtgcc      3000
     ggccctgatg ggattccgcc cgtgtttatt aagagatgtg ctatatacct ggtagaacct      3060
     ttattaatta tatttaatat gtccttgcaa actggcattt ttccggctga atggaaaaaa      3120
     gcgagagtag tcccaattca caaagcaaac aacgtggatt taatatcaaa ttacagacct      3180
     atttccattt tatcaacttt agctaaggta ctagaatcgc ttgtttgtcc ctctgtacgt      3240
     tttcatttta aacagagttt gagtattcaa cagcacgggt ttgttccttc tcgatcaaca      3300
     tdtaycaatt tagttgatct cacagaaaat atagcagagg ctcttgactc tcacaagcaa      3360
     gtggatgttg tatacacgga ctttagtaag gcttttgatc gtttgcctca tgatttattg      3420
     atgcaaaagt tatctgctta tggcatttct ggtatttttt tacaatggat caagtcttac      3480
     ttagaaaaca gaacattctc tgtagtagtt aatggctttt actctaattc tcggaaagca      3540
     acgtcaggtg ttccgcaggg gtctcatctg ggtccaatct tgttcaccat gtttgttaac      3600
     gacatactta atgcwataaa attttccaaa acttttatgt atgcagatga cctaaaattg      3660
     agtaaagtta tagacactgt acawgattca ataatgcttc aaaaagatct tgatgaactt      3720
     ctcaattggt gtcggcacaa taaaatggat ctcaatccaa ataagtgttt ttttgtaagg      3780
     tactatcgga aaagaaatat catctcattt caatatagta ttgcacaaaa taagattaaa      3840
     gaacttgagc aaatccgcga tctgggtgta ttatttgata aaaaattaac atttgtacct      3900
     cacattgaac aaatagtaaa ccggggctca aaactactag ggttcgtatt aaggaacatt      3960
     aaaggtttac gtgataacag agtccggata ctgctgtaca catctcttgt tcgcagcatc      4020
     ttagaatatt gttcagtagt atggagacct cactttgcaa gccattctct agtaatagaa      4080
     cgaatacaaa aaagattctt acggtaccta ttattctcga acggaatttc aaaaaagaaa      4140
     ctaccttctt attgtcaaca attaaatcat ttccgaatga tttctttaga agaacgtaga      4200
     aggcggttag acatattttt trtctctaaa atttttacca acggaattga ctgccctcag      4260
     ctactcaata agtttaatat acgtgtacca gcgaggtttc cccgtaatat aataaccctc      4320
     ctttatcccc cacccyggaa aacagtgttt ggatcaaact ctcctgttcc tagactttgc      4380
     aagttggtta atgagtacag tgacctattt gacattaatg ctgattcaac tagcaagatt      4440
     cgattaatat tgaacaccaa aagtcaaaca tactaaaaat atattaaatt taacattttt      4500
     tttaattttc ttttttgttc tgtgttgttt tctacgctta ggagtttatt ttcggtctaa      4560
     catagcaaga tgtatctacc tgtaagtgtt tgttacattt agtcttagtt ccatgtacta      4620
     tgtatctttt ttgtatgtat tgatgtaaac aaatgttggt ggatcaataa ataaataaat      4680
     aaataa                                                                 4686
//
ID   CR1-3_LMi   repbase;    DNA;    INV; 4189 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4189
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3112-3112 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(332..1309,1231..2922,2898..3308,3272..3640,
FT                 3577..3903,3813..4118)
FT                 /product="CR1-3_LMi_1p"
FT                 /translation="MARNCDCCERMEAELVTLRSQLQAALASLATLETAVG
FT                 GRRCCGPLAGVQQTPCASVVPSDRPAAVASPLTAREGVAPQSVVDWEVSSA
FT                 RVRRRKTSRGTEVEASPVSLANRFEALSVAEDVPDADGVACPVLAPLPSRS
FT                 GHSQRVGLLVVGSSNVRRVMEPLRKMAAREGKKSNVHSVCIPGGVIPDVER
FT                 VLPDAMKSTGCSQLQVVAHVGTNDVCRFGSEEILSGFERLSEVVKTASLAC
FT                 KMKAELTICSIVDRTDCGPLVQSRVEGLNQRLRRFCDRVGCRFLDLRQRVV
FT                 GFRVPLNRSGVHYTQEAATRVAGAVWRGLGGFLGVRSPLYSGSGYTGSGGC
FT                 VAWTGRFFRLEGLGNTQNGFQSQRGQVRHRKKADLGTIGVTVVNCRSCVGK
FT                 VPELQALIESTEAQIVIGSESWLTPEISSAEIFSKGQMVFRKDRINKKGGG
FT                 VFIAVTNGLSCSEIEADTSCELVWVEVIPDNRNKLIIGSFYRPPDSDDAVA
FT                 EMFKESLNHISNRYPKHTVIIGGDFNLPSICWHNYVFKTGGKYKTSSELVL
FT                 NAFSENYFEQLVHEPTRIVSGCENTLDLLATNNPEIVKSIKTDTGISEHRV
FT                 VVARLNVEIPKCTKNKRKIYLFNKADKNSLHAFLSDSLQSFKTKNASVDQL
FT                 WLTFKDIISVAIERFIPNKLIKEGADPPWYTKQVRSLLQKQRKTHAKFKKT
FT                 QNPQDWQSFTETRNLARTSMREAYSSYHNEILSRNLAENPKKFWSYVKYTS
FT                 GKTQTIPSLRDSNGNTTDDSTAKAELLNTAFRNSFTKEDEVNTPVFNPRTA
FT                 ASMRNLEVDVPGVVKQLKSLNKNKSSGPDCIPTRFLSEYADAIAPYLAIIY
FT                 NRSLSERSVPKDWKVAQVTPIFKKGNRSDPQNYRPSHSPKLQAISLTSICS
FT                 RILEHILCSNIMNYLEENDLLTNSQHGFRKYRSCETQLALYSHEVLSAIDK
FT                 GSQIDSIFLDFRKAFDTVPHKRLLMKLRAYGISPQLCDWIHDFLSERTQFV
FT                 VIDGKSSSKTEVISGVPREALNRSDIWRSQGSVIGPLLFLVFINDLGDNLN
FT                 SSLRLFADDAVVYRLVKSTEDQKQLQSDLDKISTWCENWQLTLNKEKCEVI
FT                 HMTTKRNPLNFNYAINQSNLKVVNSTKYLGVTITNNLTGENTGRKFYQIPR
FT                 SYNYEQLDWREHIENIVGKANQRLRFIGRTLRRCTSSTKETAYITLVRPLL
FT                 EYCCPLWDPHQVGLTEDIEKVQRRAARFVLSRYGGEASRKCCTNWGGNHEG
FT                 SEKGSSFCFITLRGGSVTEMLHELGWKSLKERRYSLRRDLFAKFQSPTFTS
FT                 ECENILLAPTYLGRHDHPNKIREIRSKTERFRCSFFPRAIREWNGREKL"
XX
SQ   Sequence 4189 BP; 1206 A; 881 C; 1027 G; 1075 T; 0 other;
     ctcagtgacc gccggccagt gcacacgtga cagcagcagc tctacattgt aaggtaaccg        60
     gcttcttaat agaagcgact tattttcatt tcgtgtgtgc tttcttttac agttcttcaa       120
     actttagtgt gctcgcgtgt ttatttatta agaatcgcgt ttagttgtca gttcagttgt       180
     tgatattttg atttattagc tcgcgtatat atttttcaga ttcgccgtta ataaacagtt       240
     tagtgttagg ttcatatttt tcgaagctca ctgtttatca aacttctgtg tcctcagacg       300
     tacttacttg gaacatacat aggtttttag aatggctagg aactgtgact gctgcgaacg       360
     gatggaggca gagttggtga ctcttcgctc gcagcttcag gcggcgttgg cttcgctggc       420
     aacgcttgag actgcggtgg gtgggcgccg ctgttgtggg ccgctcgcgg gggtgcagca       480
     gacgccctgt gcgtctgttg tgccctccga tcggcctgcg gctgtggcca gcccgctcac       540
     tgcccgcgag ggggtcgccc cccaatccgt ggtggattgg gaggtctcct cagcgcgtgt       600
     caggcggcgt aagacttccc gggggaccga agtggaggcc tccccggtta gtcttgccaa       660
     cagattcgag gcgctgtctg tggcagagga tgttcctgac gcagatggtg tcgcttgtcc       720
     tgtactcgcc cctctgcctt caagatccgg gcactcacag agggtgggtt tgttagtagt       780
     tgggagctcc aacgttaggc gggtgatgga gccccttagg aaaatggctg ctagggaggg       840
     gaagaagtcc aatgtgcact ccgtgtgcat accgggggga gtcattccag atgtggaacg       900
     ggtccttccg gatgccatga agagcacagg gtgcagccag ctgcaggtgg tggctcatgt       960
     cgggaccaat gatgtgtgtc gctttggatc ggaagagatc ctctctggtt ttgagcggct      1020
     atcagaagtg gtaaagactg ccagtcttgc ttgcaagatg aaagcggagc tcaccatctg      1080
     cagcattgtc gacaggactg actgcggacc tttggttcag agccgagtgg agggtctgaa      1140
     tcagaggctc agacggttct gcgaccgtgt gggctgcaga ttcctcgact tgcgccaaag      1200
     ggtggtgggt tttcgggttc cgctaaatag gtcaggagtc cactatactc aggaagcggc      1260
     tacacgggta gcgggggctg tgtggcgtgg actgggcggt tttttaggtt agagggcctc      1320
     gggaatacac aaaatgggtt tcagtctcaa agggggcagg tcagacacag gaagaaagca      1380
     gatctaggaa ccattggtgt aacagttgta aattgtcgta gctgtgttgg gaaagttcca      1440
     gagctccaag cgctgataga aagtactgag gcacaaatcg ttataggttc tgaaagctgg      1500
     ctgacgcctg agataagttc ggccgaaatt ttttcaaagg gccaaatggt cttcagaaag      1560
     gatagaataa ataaaaaagg gggtggcgtg tttattgctg ttacaaacgg tttatcctgc      1620
     agcgaaattg aggcagatac ttcctgtgag ttggtctggg tagaggttat acctgacaac      1680
     cggaataaat taataattgg atctttttat cggccccctg actcagacga tgcggttgca      1740
     gaaatgttca aagaaagctt gaatcacatt tcaaataggt atccgaagca tactgttata      1800
     atcggtggcg actttaattt accctcgata tgttggcata attacgtatt caaaaccggc      1860
     ggcaaatata aaacatcgtc cgaactagtt ctgaatgctt tttctgaaaa ctacttcgaa      1920
     cagttagttc atgaacccac tagaatagta agtggttgcg aaaataccct tgatctccta      1980
     gcaacaaata atcccgagat agtaaagagc atcaaaacag atacagggat tagcgaacat      2040
     cgagttgtag tagcgagact gaatgtcgaa attcccaaat gcaccaaaaa taaacgaaaa      2100
     atatatctat tcaataaagc agataaaaat tcgcttcacg ctttcctgag tgatagtctc      2160
     cagtctttca aaactaaaaa tgcgagtgta gatcagttgt ggcttacttt caaagacata      2220
     atatcagtag caatcgagag atttatacca aataaattaa taaaagaggg ggctgacccc      2280
     ccgtggtaca caaaacaggt cagatcactg ttgcagaaac aaagaaaaac gcatgcaaaa      2340
     tttaaaaaga cacagaatcc acaagactgg caatctttta ctgaaactcg caacctagcg      2400
     cggacttcaa tgcgagaagc ctatagtagt taccacaacg aaatcctgtc tcgtaatctt      2460
     gcagaaaatc caaagaaatt ctggtcatat gtgaagtaca ctagcggcaa aacacaaaca      2520
     ataccttcac tacgcgatag caatggtaat actaccgatg acagtactgc taaggcagaa      2580
     ttactaaaca cagctttccg aaattcgttc accaaagaag acgaagtgaa cactccagta      2640
     ttcaatccaa gaacagctgc cagcatgcga aacttagaag tagatgttcc tggagtagta      2700
     aaacaactta agtcactaaa caaaaacaaa tcttccgggc cagattgtat accaactaga      2760
     ttcctctcag agtatgctga tgcaatagct ccgtacttag ctatcattta caaccgatca      2820
     ctcagcgaaa gatccgtacc caaagactgg aaagttgccc aagttactcc aatattcaag      2880
     aaaggcaata ggagtgatcc ccaaaattac aggccatctc attgacgtcg atttgcagta      2940
     ggattttgga acatatactt tgttcgaaca ttatgaacta cctcgaagag aacgacctat      3000
     taaccaatag tcaacacgga ttcagaaagt atcgctcttg cgaaacacag cttgcccttt      3060
     attcacatga agtgttaagt gccatcgaca agggatctca aatcgattcc atatttctgg      3120
     atttccggaa ggcttttgac actgtacccc acaagcggct tctaatgaaa ttgcgtgctt      3180
     atggaatatc tccccaattg tgcgattgga ttcacgattt cctatcagaa aggacacagt      3240
     tcgttgtaat tgacggtaag tcatcgagta aaacagaagt gatatctggc gttcccaggg      3300
     aagcgttata ggtcccctac tcttccttgt gtttataaac gatttaggag acaatctgaa      3360
     tagctccctt agactgttcg cggatgatgc tgtcgtttat cggttagtga agtcaacaga      3420
     ggatcaaaag caactgcaaa gcgatttaga caaaatttct acatggtgcg aaaattggca      3480
     attgacacta aataaagaaa agtgtgaagt aatacacatg accactaaaa gaaatccgct      3540
     gaacttcaat tacgcgataa atcagtcaaa ccttaaggtc gtaaattcta ccaaatacct      3600
     aggagttaca attacgaaca acttgactgg agagaacaca tagaaaatat tgtggggaag      3660
     gcgaaccaaa ggttacgttt cattggcaga acgcttcgaa gatgcaccag ctccaccaaa      3720
     gagactgcct acatcacact tgtgcgtcct ctcctggagt actgttgccc cttgtgggac      3780
     cctcaccagg tgggactgac ggaagacatt gagaaggttc agagaagggc agctcgtttt      3840
     gttttatcac gttacggggg ggaagcgtca cggaaatgtt gcacgaattg gggtggaaat      3900
     cattaaaaga aagacgttat tcattgcggc gtgatctgtt tgcgaagttt caatcaccga      3960
     cttttacttc tgaatgtgaa aatattttgc tagcacccac ctacttaggg agacatgacc      4020
     atcccaataa aataagagaa atcagatcga aaacggaacg atttaggtgt tctttcttcc      4080
     cgcgcgctat tagagaatgg aacggtagag aaaagttatg aaagtggtta atgaaccctc      4140
     tgccaggcac ttaaatgtga tttgcagagt atctatgtag atgtagatg                  4189
//
ID   CR1-3_NVi   repbase;    DNA;    INV; 4278 BP.
XX
AC   .
XX
DT   16-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4278
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 750-750 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           165..1358
FT                 /product="CR1-3_NVi_1p"
FT                 /translation="MSLNGSFLSAGSLDGRVMPIDDSLVTKRMPRLSVCVG
FT                 CEYENCDCFGQGDINCVKCNRRFHEKCAGLSGCVKCSDDLDKVVCNLCLGP
FT                 STSVSSAHLSIGGSRVPASVPVSVAVGTSESAAAFPAPAQTIVSDDKFEEL
FT                 KSLLQGNYASIRESLTGIDDRFARLDSQLEQDRTERRAIRAEVAKLDARLR
FT                 ALEERPAAVLAGPVVVSGDGSAPLPDGRXVQALASLDSASEVQDQLYRSRN
FT                 LLLYDVPAGGSDSDLATVKEILGKISSLDLDKISVRRFARPTSRGTFPPLV
FT                 VRFSTSFEVIRMITYRSLLPSGISVAADLTPAQRARRRQLLEEASKHNRDH
FT                 PDKPKTVKFVRGSLALIDAKQKTGVFSCQQKPKLIVVLRIKPSSPSTTKML
FT                 THW*"
FT   CDS           1368..4031
FT                 /product="CR1-3_NVi_2p"
FT                 /translation="PIFAPIFFNLLIYRTDIIVFTETWLQPALLSAELGLV
FT                 GYRIYRRDRDLQAVGVSRGGGVLVAVRDHINSSELFVESSLEQIFIRISLP
FT                 DTTMILGAVYLQPNSDTTRYQEYVDGLETVAEANADCQLVMVGDYNLPSVT
FT                 WRSNPLQFAQTGYVDPEHRMNAELICGCFSSLGLSQLIPPHPSKGYSLDLL
FT                 FASPGFIDLFELNEQLVPTDGHHVPSVFNANICCDSDFVPVSKRNFFAADY
FT                 ESIVNHLGEVDWDSILSCDCLEDILCGFYNVVDTCISKQVPLSRSNPSTYP
FT                 VWYDRELICTIRDKKLAHKAWKLTGETSDEIEFKRLRAVCIRMSRSRYRDY
FT                 VRSVETGLRSNINAFWSFVKGLKGEAGIPVTTYLDDLKAESESETVNLFSS
FT                 HFSSVYDCNPASPLNHLLESRELISNVRVLAEDLRPFVRELKCTANPGPDN
FT                 VPNVFVKRCWPALERPIVDIFNKMLANGYFPKAWKRSYIFPVFKHGDRHDV
FT                 KNYRPISLISCIPKLFDAFLTDVLSQRLLCKITDLQHGFLPGRSTLTNLLI
FT                 FNDFVSDALENSAQVDSIYIDFSKAFDRVDHGRLLAKLWNIGVRGSIFNLL
FT                 SSYLSNRYQAVRINNSVSPAVLVSSGVPQGSHLGPLLFCIYIDDLVKQFRF
FT                 ANALLYANDVKIFMRIHSEEDVERLRADLNALSGWACENGLVINAAKSQVV
FT                 SFYRGRTQLQFQYELDGSAIARTEVVRDLGVLFDSRLTFAPHVDYVVSRCR
FT                 GLIGFVKRTTQDFSNISAIIYLYNTLVMPTFIYCCQIWSPYTQIAINHLDS
FT                 VQHKFIRYLAYKSGRPMAPIDHDYSLIASSLGIPSIHSVHRYHDGLLTFKL
FT                 LRKFMICPSICVAIDLYTSIWRIRTLGSFRPYLD*"
XX
SQ   Sequence 4278 BP; 945 A; 948 C; 1037 G; 1347 T; 1 other;
     ctctcttacg cctcctgtgt cttcccaggg tgtttttagt ggcgttactg cgcactgaag        60
     agctctggct gcctgcttgt tgttttgtga agcgtcgtgg cgtgtagtgc tctgtctaag       120
     acttgtgctt atttgtctgg tgtatatttc agtgttagac agctatgtcc ctgaacggta       180
     gctttttatc cgcgggctcc ttagacggca gagtcatgcc gatagacgat tctttggtta       240
     caaagcgtat gcctagattg agcgtatgcg tcggttgcga atatgaaaat tgtgattgtt       300
     ttggacaagg tgacattaac tgtgtaaaat gtaaccgtcg cttccatgag aaatgtgctg       360
     gcttgtcggg ttgtgttaag tgtagcgatg accttgacaa ggtggtctgt aacctctgtc       420
     tcggaccttc gacctccgtt tcctctgccc atctgagcat cgggggatca cgtgtgcctg       480
     cttcggtccc agtgtcggtt gccgtcggaa catctgagtc agcagcggcg ttccctgccc       540
     ccgcccaaac catagtttcg gatgataaat ttgaggagct gaagagcttg ctgcagggta       600
     actacgccag catcagggag tccctgactg gtattgatga caggtttgcg cgccttgact       660
     ctcagctgga gcaggacagg acggagaggc gtgctattcg tgcggaagtc gctaagctgg       720
     atgcccgttt gagggccctt gaggagcgcc ctgctgctgt tctggctggt ccggttgtcg       780
     tgtctggaga tggttctgca ccactgcccg atggccgagy tgtccaggct cttgcctctc       840
     ttgactctgc gtcggaagtc caggaccagc tgtaccgctc gcgcaacctc cttctgtacg       900
     acgttccagc tggcgggtca gactctgatt tggcgactgt caaggagatc ctgggcaaga       960
     tttccagtct ggatcttgat aaaatcagcg tcaggaggtt tgccaggccg acttctcgag      1020
     gaactttccc tccattagtt gtaagattca gcaccagttt tgaggtgatc aggatgatca      1080
     catacaggag tcttcttcca tctgggattt ctgttgccgc agaccttaca ccagcccagc      1140
     gcgcacgtcg tcgtcagctg cttgaggagg cgagcaagca taatcgtgac catcctgaca      1200
     aacccaagac tgtcaaattt gttcggggca gtttggctct catcgacgcc aagcaaaaga      1260
     caggggtttt ttcttgccaa cagaaaccaa agctaattgt tgtgctgcgg ataaagccaa      1320
     gctcaccatc tactaccaaa atgctcactc actggtaaat aagctaacct atcttcgctc      1380
     caatcttctt caacttgctt atttaccgga cggatatcat cgttttcaca gagacttggc      1440
     tgcaacccgc tttattatct gccgaactcg gactggttgg ctatcggatt tatagaaggg      1500
     atcgtgacct tcaggctgtt ggggtctcaa gaggtggtgg cgtacttgtt gcagtaaggg      1560
     atcatatcaa ctcctctgaa ttatttgtcg aatcctcact cgaacaaatt ttcatcagaa      1620
     tttcccttcc agacaccacc atgatcctgg gtgcggtcta tcttcagcca aattctgata      1680
     cgacacgata ccaggaatat gttgatgggt tggagacggt ggctgaggcc aatgctgatt      1740
     gtcagcttgt tatggtggga gattacaatc ttccttccgt tacttggcgc tctaatccac      1800
     tacagtttgc tcagactggc tatgtggatc cggagcatcg tatgaacgct gaactcatct      1860
     gcggctgctt ttcatctttg ggactgtccc aacttattcc accacatcca tcgaagggct      1920
     actcgttgga cctgttgttt gcatctcctg gattcatcga tctctttgaa ctgaatgaac      1980
     agcttgtgcc taccgatggt catcacgttc cgagtgtttt taatgcgaat atttgttgtg      2040
     atagtgattt tgtacctgtg tcaaagcgta atttttttgc tgccgattat gaatcgattg      2100
     taaaccatct tggtgaagtg gactgggatt cgatcctttc ttgcgactgt ctcgaggaca      2160
     ttttgtgtgg cttttataat gttgtggaca cctgtattag caaacaggtt cctttgtcga      2220
     gatcgaatcc tagtacttat cctgtatggt atgatcggga gcttatatgt actattagag      2280
     ataaaaagtt ggctcataaa gcgtggaaac tcactggcga aaccagtgat gaaattgagt      2340
     tcaagaggct ccgagccgtt tgtatccgga tgtcgagatc tcggtaccgg gattatgttc      2400
     gatcggtgga aaccggcctt aggtccaaca ttaacgcgtt ttggtctttt gttaagggtt      2460
     tgaagggcga ggctggtatc ccagttacta cgtatcttga cgatttaaag gctgaatcgg      2520
     agtctgaaac ggttaacttg ttttcttccc atttcagttc agtatatgac tgtaatccag      2580
     ctagcccttt gaatcatctt ctagaatcgc gtgaacttat ttccaatgta agagttttgg      2640
     cggaggatct gcgtcctttt gtccgtgagt tgaaatgcac agcgaaccct ggtccggaca      2700
     atgtacctaa tgtctttgtt aagcgctgct ggccagcttt ggagaggcct atagttgata      2760
     tttttaacaa gatgttggct aacggttatt ttcctaaggc gtggaagcgt tcttatattt      2820
     ttccggtgtt taaacacggc gatagacatg atgtcaaaaa ttataggcct atttctctta      2880
     tcagctgcat tccgaagctt ttcgacgcgt ttttgaccga cgtattgtcc cagcgactgc      2940
     tttgtaagat cactgatctg cagcacggct ttctgcctgg tcgatcgact ttaactaacc      3000
     tcttgatttt taatgacttt gtctctgatg cccttgagaa ctcggctcaa gtggactcca      3060
     tctatattga tttctctaag gctttcgata gagttgatca tggcaggttg ctggctaagc      3120
     tgtggaacat tggtgttcgt ggctccatat ttaatctatt gtcgtcatac ctttcgaatc      3180
     gctatcaggc cgttagaata aataatagcg tgtctccagc tgtcttggtg tcgtctggcg      3240
     tacctcaggg ctctcacctg ggtcctttat tattttgcat ctatattgat gatctcgtga      3300
     agcaatttcg ctttgcgaat gccctgttgt acgcgaatga tgtcaagatt tttatgcgta      3360
     ttcactctga ggaggatgtg gagaggctta gggctgatct taatgctttg agcggttggg      3420
     cgtgcgaaaa tggcctggtc ataaacgcgg ccaagagcca ggtagtgtca ttttataggg      3480
     gcaggacaca actacagttc cagtatgagc ttgacggatc ggctattgct cgcacggagg      3540
     tggttaggga cttgggggtt ttatttgact cgcgcttgac cttcgcacct catgtggatt      3600
     acgtggtctc taggtgtcgt gggctgatcg gatttgtgaa gcgaactact caagactttt      3660
     ccaacatatc tgctattatt tatctttaca atactctggt catgcctact ttcatttatt      3720
     gttgtcaaat ttggtcaccc tatactcaaa ttgccatcaa ccatttagat tccgttcagc      3780
     ataaatttat tcgttacctg gcttacaagt ccggccggcc catggcgcct attgaccacg      3840
     attattcact catagcgtct tcgttgggta ttccttcgat acactcagtg catcggtatc      3900
     atgatggtct gcttacgttt aaacttttgc gtaaatttat gatttgtccg tcgatctgcg      3960
     tagccataga cctatacacg agcatctggc gcattcgaac tttgggttct tttcgacctt      4020
     acctagatta aagcgtgctt ggaattctct ccctcaacgt atcactgtca tcgagcagtt      4080
     gtctgaattc aaagtgaacc tcaaatcatt tgtgtcggca tttggttagg aaacttggtt      4140
     cataatattt ttgttgtttt gtatattgtt tgttattttt acaattgtca tgtacctgaa      4200
     ttttatattt ttgtaagggc acttatgccc gttaatttat ataaataaat aaataaaaat      4260
     ggctaaacaa gcaaaaat                                                    4278
//
ID   CR1-3_PPo   repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-303
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3106-3106 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 303 BP; 129 A; 33 C; 42 G; 99 T; 0 other;
     aacaactatt acggggaaag gacaacgaaa tacgtaatac ctaatttata taatatcatt        60
     aacttcctca gagatgaaag cattgtcaat aaatccaaaa acattgtaaa aaataaatta       120
     agaaatcatt tcttacaaga ttaagtaact agtaaatata taagaattaa gtaggagata       180
     cattaaggta tatttataag aaatgggtgt ttgtcgccaa caaactgctg tgcagtttgg       240
     cgacattttt atttgtaaat ttttatatat tttttttctg tatgtaaata aataaaaaaa       300
     aaa                                                                     303
//
ID   CR1-3_TCa   repbase;    DNA;    INV; 4800 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   04-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   CR1-type retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   CR1-3_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4800
RA   Jurka J.;
RT   "CR1-type retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 737-737 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(948..2114,2102..4798)
FT                 /product="CR1-3_TCa_1p"
FT                 /translation="MSVCYKCKSSVVNSIACLNCKKAYHPSCLRAFKNYSA
FT                 IGQDLTSISACPCCDKLKSLQNPTSPTLNISTNTIFEDLGILKQETDLIKK
FT                 TLDDLKTFITESPTTVCTFDKIDEYVRKSFDDLESKLISLLKDTLNREIEK
FT                 LKNSIKNEVIAEISTNLNRTNDNIKTANSSDLTLKSTNSKNVSTQSVSKTN
FT                 RYKVRIFADQKGRHCIDLLETYIPVSKYVIQSVVKPYSSLQELLKTENNNE
FT                 QLGNNDFVVIYAGNHEAQKGKIPDENTLNELINHKFLNTNIILIGCPYFVN
FT                 RPILNNFVYELNCNFYNVAKNNKNIYYLDSNDKIFDQFKTDNFVINKAVKR
FT                 CIIKNLGDLITECQDHTNRSAVEQNPVATFLDTSLPSVDKSDSQSFLSVFL
FT                 NRFVCLQPSHSKISISINKKTVNSFHGIYQNVRGLKSKSVTFFNSFLSTSD
FT                 EFDLIVITESWLDDTVLDGELFSDNYYVFRRDRDLRHLGIHRGGGVLIAVN
FT                 NKYNCRQLDISNISRRSSPAIDLVAIKINVTSYQHLFVFVVYIPPSISFSD
FT                 FDNFFDLLNNFDEINNDNVLFLGDFNTPLFSGFSKNNFSISLKHFASFHNF
FT                 NQFNNIRNNRNNILDLIFSNMDCAVSKSSFSFVPEDPFHPSLEFTLDIVAK
FT                 TPDKFYMNRDHVAFNFKKANFDCLYTTLQVVDWSELEKFSDVNEACRVFYE
FT                 TLYNCFELSVPKLFCRKNYRTFPTWFNTDIINCLRRKSNILKKYRRTKNMH
FT                 FYEEFKKLRSLSKSLITTAYSQYIGHMENTISKDPKKFWSFVQAKKRNSRI
FT                 PGVLYHNGNAISNPNDIVNSFAKFFKSVFSDMTLTSDSPSMMTNLNSFITV
FT                 NEINEHEIIRVLKRSKDTLTAGCDGIPSFLLRDCAHIFSKPLVYIFNLILQ
FT                 TSTFPNIWKIAHVCPVFKTGDITQIQNYRPISILCNFSKVFESIIYDRIYS
FT                 SVKRFISPSQHGFVEKRSTVTNLACFTQFISDALDRKGQVDVIYMDFKKAF
FT                 DQIDHHLLLLKLDQYGFSGSLLSLIKSYLANREQRVKYRNYISDSYVATSG
FT                 VPQGSNLGPLLFLLFINDICGSLSTCAKLLFADDLKIYTEIKSIEDCLTLQ
FT                 NNINAVVKWCNENRLYLNPSKCNVMSYTKKREFLEFVYDISSVTLHRTFII
FT                 KDLGVIFDTELAFSEHIRDVTARAIKSYGFIYRNCRDFKNLSVMKTLFFSL
FT                 VRSKLEYGALIWHPIYKIHIDQLENIQRRFLKFLVFIIDGNYPIRGYDQNL
FT                 LLNRFGLQSLQFRRICIIIKFLYNLIN"
XX
SQ   Sequence 4800 BP; 1561 A; 807 C; 735 G; 1697 T; 0 other;
     ataatcttta acaaaaattt gctttaaaat aaaatgtttg aaaaaccgaa attaaactaa        60
     attaattgtg tctaacactt tagtagagga aaaaggagaa gacataaaag tcaccaaagt       120
     cttcagagtc gtttttagta ctaaatttgc ttatatgcaa gcgcttaatt aaggtaacag       180
     ttttttggtt tcttgcttat atctcgaaaa cagttactcc tatcaatttt tatcttttta       240
     ctaaaattaa agctgataaa atttcctaca aaatagttat ttgcattttt catgtaggac       300
     taaccataag cgagatataa gtttgaaaat aattaatatt taaaaaaagt gctttaacag       360
     aaaatgcctt gtgatttaaa atacacttaa tttattgggt ccaatacttt attatttact       420
     ttattttttt ggtgctatgc taggcttgtg ctaatgtgct ataaataagg tgttacaatt       480
     ttgtgctgta aataaggtgt tgtgcatttt gtgctataaa cgtcagtttt ttaatttttc       540
     gttaattatt tgtggtaata acttaataag tgactaaggt ttaaggttat gttaaactgt       600
     agtcaatagc gttttgcatt tcttttggac tttcaaacat ttatacttta cacaaagagt       660
     tatactgata taaatgacgt gatcaatgct cgtactataa ccaataatcc aattttgtgc       720
     tactttttat gaacattagt ttttacatgt aaatttcata tcagaggcgt acgcttctag       780
     aattgctgat aataattatt attctatcct ctgttccttt tgtgtccttt ccgtggccta       840
     cctgtgcttg tttttttatt ttgagtcact acgaacggcc gcgtagtgtg aagcgtgtgt       900
     ccttgtcttt attcccttgc ctgattgtat ttatcaactc actcataatg agtgtctgct       960
     ataaatgcaa aagtagcgtc gtgaattcta tcgcttgctt aaattgcaaa aaagcgtatc      1020
     accccagttg cttaagagcc tttaaaaact attctgcgat tggtcaagat ctgacatcaa      1080
     taagtgcatg cccttgttgc gataaattaa aatctttaca aaatcccact tctccgactc      1140
     taaatatctc tactaatact atatttgaag accttggtat cctaaagcaa gaaaccgact      1200
     taataaaaaa aactcttgat gatttaaaaa cgtttataac tgaatcaccg actactgttt      1260
     gtacttttga taaaatagat gaatatgtac gcaaaagttt tgatgatctt gaaagcaaat      1320
     taatttcttt gttaaaggat acccttaatc gtgaaattga gaaattaaaa aattcaataa      1380
     aaaacgaagt aatagcagaa atctctacta atttgaaccg taccaatgat aatattaaaa      1440
     ctgccaactc ttctgattta actttgaaat ctacaaattc aaagaatgta agtacccagt      1500
     ccgtgtctaa gacgaacaga tataaagttc gtatatttgc tgatcaaaaa ggacgtcatt      1560
     gtatagactt attagaaact tatattccag ttagcaaata tgtgatccaa tccgtagtaa      1620
     aaccttattc ctcgttacaa gagcttctta aaactgaaaa caacaacgag caacttggca      1680
     ataatgattt tgttgtaata tacgctggaa atcatgaagc acaaaaagga aaaatccctg      1740
     atgaaaatac tctaaatgaa cttatcaatc ataaattttt aaatactaat atcattctta      1800
     tcggctgtcc atattttgtt aatcgtccca ttttgaataa ttttgtttat gaattgaatt      1860
     gtaattttta taatgtggct aaaaataata agaacatata ttacttagac tcaaacgata      1920
     aaatttttga tcaattcaag acggataact ttgtaataaa taaagctgtt aaaaggtgca      1980
     ttataaaaaa cctgggcgac ctaatcactg agtgccaaga ccatacaaat agatctgcag      2040
     ttgaacaaaa tccagtagca acgtttcttg acacatctct gccatcagtt gataaatctg      2100
     actctcagtc tttttaaatc gcttcgtctg tttacagccc tcacattcta aaatatctat      2160
     atcaatcaat aaaaaaactg tcaatagttt tcatggcatc taccaaaatg ttaggggatt      2220
     aaaatcaaaa tcagttacat tttttaattc atttttatct acgtctgatg aatttgattt      2280
     aattgttatt actgagtctt ggttagatga caccgtcttg gatggtgaat tgttttctga      2340
     taattattat gtttttcgtc gggacagaga tctccgccac ctgggtatcc atagaggtgg      2400
     tggtgtgctt atagcagtta ataacaaata taactgtcgt caactcgata tatctaatat      2460
     tagtcgtaga agttctcctg ctattgatct ggttgcaata aaaataaatg taacaagtta      2520
     tcaacatctc ttcgtgtttg tagtctacat tcctccttct atttccttta gtgattttga      2580
     caattttttt gatcttctta ataattttga cgagattaat aatgacaatg ttttattctt      2640
     aggagacttt aacactcctt tattcagtgg attttcaaaa aacaatttta gtatttctct      2700
     caaacacttc gcttcttttc ataattttaa tcaatttaat aacatacgta ataataggaa      2760
     taatatattg gatctcatct tttccaacat ggactgtgcc gttagcaagt cctctttctc      2820
     gtttgttcct gaagatcctt tccatccgag tttggagttt accctcgata ttgtagcaaa      2880
     aactcctgat aagttctata tgaataggga ccacgtcgca tttaatttta aaaaagcaaa      2940
     ttttgattgt ctatacacta ctttacaggt agttgattgg tccgaactgg agaagtttag      3000
     cgatgtgaat gaggcatgtc gagtttttta tgaaaccctc tacaattgtt ttgagttatc      3060
     tgttccaaaa ctattttgtc gtaaaaacta ccgcacattt cctacttggt tcaacactga      3120
     cattatcaat tgtctacgtc gtaaatctaa cattttaaag aaatatcgtc gaactaaaaa      3180
     tatgcatttc tatgaggagt ttaagaaact tcgatctctt tcaaaatccc taataactac      3240
     tgcctattct caatacatcg gccacatgga aaacactatc tccaaagatc caaagaaatt      3300
     ctggtctttt gttcaagcta aaaagcgtaa ctctagaatt ccgggtgtgt tgtatcataa      3360
     tggtaatgca atatcaaatc ctaatgatat agtaaatagt ttcgctaaat tcttcaaaag      3420
     tgttttttct gacatgactt tgacttcaga tagtccctcg atgatgacga atctaaatag      3480
     ttttattact gtaaacgaga ttaatgagca tgaaataatc cgggtattaa agcgatctaa      3540
     agacacactt actgctggtt gtgatggtat ccccagcttt ttattaaggg attgtgcaca      3600
     tattttttct aaaccactcg tatacatttt taatttaata ttgcaaactt cgacgtttcc      3660
     taacatatgg aaaatagcac acgtttgtcc tgtcttcaaa acgggtgata taacacaaat      3720
     tcaaaactac aggccaattt caatcttgtg taatttctcg aaagtttttg agtcaattat      3780
     ttacgaccgc atctactctt ctgtaaaaag atttatatca ccttcgcagc atggatttgt      3840
     tgaaaaaaga tcaactgtta caaatctagc ctgttttact cagttcatat ctgacgcttt      3900
     ggacagaaaa ggtcaggttg atgtcattta tatggacttc aaaaaagcat ttgatcaaat      3960
     tgatcatcat ctgttattgt taaaacttga tcagtatggt ttctccggtt ctttgctatc      4020
     cctaataaaa tcttatcttg ctaatcgaga gcaaagggtt aaatatcgta actacatttc      4080
     ggatagttac gttgcaactt cgggtgtgcc gcaaggttcc aatcttggac ccttattatt      4140
     tttgcttttc attaatgata tatgtggttc tttatcaaca tgcgctaaac ttctctttgc      4200
     cgatgatctt aaaatttaca cagaaataaa atctatagag gactgcctca ctttacagaa      4260
     caatattaac gcagtagtga aatggtgtaa tgaaaatcgc ctttatctaa acccatccaa      4320
     atgtaacgtt atgtcttaca ctaaaaagcg cgaattcctt gaatttgtat atgatatttc      4380
     gtccgtaaca ctgcatcgta cctttattat taaagatttg ggagttattt tcgatactga      4440
     actcgcattc agtgagcata ttagggatgt tacggctaga gcgattaagt catatggatt      4500
     catctataga aattgtcgag attttaagaa cttatcagtt atgaagaccc tattcttctc      4560
     gttagttaga agcaaactgg aatacggcgc acttatttgg cacccgattt ataaaatcca      4620
     tatagatcaa ctcgaaaaca tacagcgacg attcctaaaa ttcctagttt ttataataga      4680
     tggaaattat cctataaggg gctatgacca gaacttgctt ttgaatagat tcggtctcca      4740
     atctttacag tttcgccgta tttgtattat aattaaattt ctgtataatt taattaataa      4800
//
ID   CR1-43_AAe  repbase;    DNA;    INV; 4749 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-43_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4749
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1130-1130 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           325..1188
FT                 /product="CR1-43_AAe_1p"
FT                 /translation="MACKRCQKKVSDDEIVVCRGYCGASFHAVCVNVDEPL
FT                 RKQLKHYRNNVFWMCDGCANLFTNAHFRTMMTGFDDKISAMPAAIETMKGE
FT                 IEKLHNCLNNLSAKVDGMPSTPTPFSTPNPWPAIHRINRSVKSAKRLRDID
FT                 GNSIKVDSGSIKTGTKALDALSSVRLAPRSNDDLFWIYLSAFHRDTSESQI
FT                 TSFVTECLELPTNIEPQVVKLVPKGKDPNTLNFVSFKVGLSDKFRDKALSC
FT                 DSWPENIRFRQFEDNRSKNLPQVVSLTSTIHPGTEDPSERASSSMIV"
FT   CDS           1062..4637
FT                 /product="CR1-43_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KHPIPAIRGQPFKKLAPGGQSNFHDSSWDRGSFRASF
FT                 FEYDSVSSLGPPGRTQRGIRGAPSDPVTVEPSSPAYLSNYAFDSVSCHHRR
FT                 PGPVNGGLEGVSQPAPSGKYACSRRLSLGDEFDNFSSVPSKTIHVVNLERN
FT                 EPSLSSTSLPGRTVESLMEAPDPSNPVEQIAVTAHHSRPGPVVGCGAGVFQ
FT                 SVTTGEYSYNSRNGISIPDESIFRTSNGQSSTSTIQHADNDDVLIYYQNAG
FT                 GMNSTTHDYLLATSDECYDVIVLTETWLDSRTISSQVFNSXYDVFRCDRGP
FT                 RNSRKSTGGGVLVAVNKKRKSKAIENDQWSSIEQVWVCIEFTNRKVFLCGI
FT                 YVPPDRTRDDDLIERHTRSIMSVVEMTSACDEIIVIGDFNLPGISWQPSHH
FT                 GFLHPDPDRSTMHVGATKLLDCYCSATLRQINHLTNENNRSLDLCFVSAQD
FT                 VAPTVSIAPLPLVKQARHHPPLILTLNDRHTIEMKGIVPVSYDFPNADHGG
FT                 IAEYFASIDWLNVLDGRDADEAALTLSNIIGHVIDRHVPKKAFNGNRKPWI
FT                 TRELSSLKTAKRAALRHYCKHRTIPLRDQYRSLNAEYKLRIRESFRHYQHG
FT                 IQRNLQAKPKSFWSYVNSQRKESGFPSTMTLNGEVTSEPQKVSQLFADKFA
FT                 STFCDEIISDEQVNQAASNVPLLVGSTLSSXDIDDAVIFRAASQLKSSTNL
FT                 GPDGIPAVFVKKYIDNLIVPLRHVFNLSLSSGVFPSIWKTAIMFPVHKKGD
FT                 RKDVNNYRGISSLSSISKLFELIVLDALMSHSKQYLSDEQHGFISGRSTTT
FT                 NLLCLTSHVTESFANKGQTDVIYTDLSAAFDKINHAITIAKLEKYGVSGNL
FT                 LRWLKTYLIGRKLSVTVEGFRSKDFLAASGIPQGSHLGPLIFLLYFNDVNY
FT                 VLHGPRLSYADDLKIYSRIRSKADAIRLQQDLDNFKNWCTLNCMVVNPDKC
FT                 SIISFARIRDPVVFDYKLHDTVIQRVDHVKDLGVVLDNQLTFKRHVSYVVE
FT                 KASRTLGFIFRIAKDFTNVYCVKSLYCSLVRSNLEYCSVVWHPYYQNGIER
FT                 IESVQRRFIRFALRRLPWRDPFHLPSYESRCRLIHIDTLQVRRDVSRALFV
FT                 ADTLQGRIDCPDILRAVNLNVRPRTLRNNSLLRLPFQRTNYGQNSAIIGMQ
FT                 RTFNRAASVFDFNLSRETVRRNFYVLFSNLNDD"
XX
SQ   Sequence 4749 BP; 1269 A; 1118 C; 1013 G; 1346 T; 3 other;
     ggcaacattg tctacttgtg ctccaagttt gttattgttc gtcgtgcttt ttatcctttt        60
     ttgtggtgca gtcaagtgcc ttaaaccacc gttttagtat tcaccgatta gttaatcgaa       120
     ccttcgcgct ggaatataaa aatcgtgcga ttcatcgcga tatagttcgt gtactttgat       180
     aatttgtcaa ctcgcagcaa caacaagtgt cggtgcccga tcgaatttgc aaccaaattt       240
     tcacctaccc cgcacaccga ttttatctgc tctaagctcc atctactgtt ggatagccgc       300
     acaccaaatt gatcgtttgc aaacatggcc tgtaagcgct gtcaaaagaa ggtttccgat       360
     gatgaaattg tcgtatgtcg aggatactgc ggcgcatcgt ttcatgcagt ttgcgtcaat       420
     gttgatgaac ccctacgcaa gcaactgaaa cactatcgta acaatgtgtt ttggatgtgc       480
     gatggatgtg ccaacctctt tactaatgcg catttccgta ctatgatgac gggatttgat       540
     gacaagattt ctgctatgcc agcagctatc gagaccatga aaggtgaaat cgaaaagctt       600
     cataactgtc tgaacaattt atcagccaaa gtcgatggta tgccctcaac tccaacgcca       660
     ttctctactc caaacccttg gcccgctatc catcgcatca atcgctccgt gaaatccgca       720
     aaacgcctcc gtgatattga cggtaattcc attaaagttg acagtggatc cattaagacg       780
     ggtacgaaag ctttagacgc actatcatct gttcgcctcg ccccgcgatc caatgatgat       840
     ttgttttgga tatatttatc agcatttcac cgagatacgt ctgagagcca aatcacctca       900
     tttgtcactg agtgcttgga gttgcctacc aacatcgaac ctcaagtggt caaattagtt       960
     cctaagggaa aagatccgaa tacgctcaat ttcgtatcat tcaaagtcgg attgagcgac      1020
     aaattcaggg ataaagcgct ttcatgtgat tcgtggcctg aaaacatccg attccggcaa      1080
     ttcgaggaca accgttcaaa aaacttgccc caggtggtca gtctaacttc cacgattcat      1140
     cctgggacag aggatccttc cgagcgagct tcttcgagta tgatagtgta agcagtttag      1200
     gaccaccagg acgcacgcaa cgaggcatta ggggagctcc ttctgacccc gtaacagtcg      1260
     agccatcatc tcctgcatat ctatcgaatt acgcttttga ttccgtttcc tgccatcatc      1320
     gtcgtcctgg tcctgttaac ggtggtttgg aaggagtctc ccagcctgca ccttcaggca      1380
     agtatgcgtg tagtagaaga ctttccctcg gtgatgaatt cgacaatttc agctctgttc      1440
     cctcaaaaac cattcacgtc gtaaatcttg aacgcaacga accttcctta tcatcaactt      1500
     cgctaccggg ccgcactgtg gaaagcctca tggaagctcc cgacccttct aacccagtcg      1560
     agcaaatcgc agtcaccgct catcatagtc gccccggtcc tgtggttggt tgtggtgcgg      1620
     gagtcttcca atccgttacc acaggcgagt attcgtacaa ttcacgtaat ggaatatcga      1680
     tacccgatga atcaattttc aggacctcaa acggacagtc aagcacatcg acaattcagc      1740
     acgctgacaa tgacgacgtt ctcatctatt accaaaatgc tggtgggatg aacagcacta      1800
     cacacgatta tctgctggca acatccgacg agtgctatga cgtaattgtg cttaccgaaa      1860
     cgtggcttga ctcacggacc atctccagtc aagtgttcaa ttccgamtac gacgtttttc      1920
     gatgcgaccg cgggcctaga aatagccgta aatcgacagg tggcggtgtt ctagttgcgg      1980
     ttaacaagaa gcgcaaatct aaggcgattg aaaacgacca gtggagcagt atcgaacagg      2040
     tatgggtgtg catagagttc acgaatcgca aggttttctt gtgcggtatt tacgtccctc      2100
     ctgatcgaac acgtgacgac gatttgatcg aacgtcatac tagatcgatc atgtcggtgg      2160
     tcgaaatgac gtcggcgtgt gatgaaatca ttgtcattgg ggatttcaac ctacctggta      2220
     tctcgtggca accatctcat cacggtttcc ttcaccccga tcctgaccgc tctacaatgc      2280
     acgttggtgc aactaaacta ctcgactgct actgttcagc cactttacgt caaattaacc      2340
     acttgaccaa cgagaacaat cgttcccttg atctctgctt tgtaagcgct caggatgtcg      2400
     ctccgacagt ttcgatcgcc cccttgccgt tagtcaagca agcaaggcat caccctccgt      2460
     taattcttac gttgaacgac cgccatacaa tcgaaatgaa aggaattgtt cctgtttcct      2520
     atgactttcc gaatgctgac catggtggaa ttgcagaata ttttgcctcc atcgattggt      2580
     taaacgttct ggatggacga gatgctgatg aggcggcttt gactctctca aacataattg      2640
     ggcatgttat tgatcggcat gtgcccaaga aagctttcaa tggtaacagg aaaccatgga      2700
     ttacacgtga gcttagttca ttgaaaaccg caaaaagagc agcactcagg cattattgta      2760
     agcaccgcac gattccgttg cgtgatcaat atcggagttt gaacgccgaa tacaaattgc      2820
     gaattcgtga gagttttagg cattaccaac acggaatcca gcgaaacctg caggcaaagc      2880
     caaaatcttt ttggagttat gtgaattctc aacggaagga gtcaggtttc ccttcaacca      2940
     tgactcttaa tggtgaagtt acctcagagc cacaaaaagt cagtcaactt tttgctgaca      3000
     agtttgcgag tactttctgc gatgaaataa tttccgatga acaagtcaac caagctgcat      3060
     ccaatgttcc tttgctggta gggagcactc tgagctcmst cgacatcgat gacgccgtga      3120
     tatttagagc tgcctcgcag ttaaaatcat ctacaaacct cggaccagac ggcattccag      3180
     ccgttttcgt taaaaaatac atcgataacc tcatcgtacc acttcgacat gtattcaacc      3240
     tgtcactatc tagtggtgta ttcccgtcta tttggaaaac cgccatcatg tttcctgtcc      3300
     acaaaaaagg agatcgaaag gacgtaaaca actaccgtgg catttcgtct ttgtcctcca      3360
     tttccaagtt gtttgaactc atagtcctgg atgcattgat gtctcacagt aagcagtatc      3420
     tgagcgatga acaacatggc tttatctcgg gaagatctac cactacaaat ctcctgtgcc      3480
     ttacgtcgca tgtcacagag agttttgcga ataagggtca aacggatgtc atctataccg      3540
     acttgtctgc ggcattcgat aagatcaatc acgccattac gattgccaaa ttggaaaaat      3600
     atggtgtcag cggtaatttg ttgcgttggc tcaaaacata cctgattgga cggaaactct      3660
     ccgttacagt agaaggtttt cgttcaaaag attttctcgc cgcatcggga atcccacaag      3720
     gaagtcatct tggaccgcta atattcctat tatacttcaa tgatgtcaac tacgtgctcc      3780
     atggccctcg cttatcctat gctgatgact tgaagattta ttcgaggatt cgttctaaag      3840
     ccgatgcaat tcggcttcaa caagatttgg acaacttcaa gaactggtgt accctgaact      3900
     gtatggttgt taaccctgac aagtgcagca ttatttcttt tgccagaatt cgcgatcctg      3960
     tagtttttga ctacaagctg catgataccg taattcagcg agtagatcat gtgaaggatc      4020
     taggtgtagt tttagacaac cagttaacat tcaaacggca tgtttcatat gtcgtagaga      4080
     aggcatcccg tacgttaggg tttatctttc gcatcgcaaa ggacttcacg aatgtgtatt      4140
     gtgttaaatc gttgtactgt tcgctagttc gatccaatct cgaatactgc tcggtcgtat      4200
     ggcatcctta ctatcagaat ggtatagaga ggatcgaatc agtacaacgt cgcttcatac      4260
     ggttcgccct tcgtcgactt ccttggcgtg atccattcca tctaccgagc tatgaaagtc      4320
     gatgtcgttt aatacatatc gacacacttc aagtgcgaag ggacgtttcg agagctctat      4380
     ttgtagccga tactttacaa ggccggattg actgccctga tattctacgg gcggtgaact      4440
     tgaacgttcg tcctagaacg cttcgaaata attcgttatt gagactacct tttcaacgca      4500
     ctaattacgg acagaacagc gcaataatag gcatgcaaag gacgttcaat agggccgctt      4560
     ctgtgtttga ttttaatttg tctcgtgaaa ctgttcgtcg taatttctat gtactatttt      4620
     ccaatttaaa tgacgattag tgatatcctt atgtgttata ttttttattg ttaacaaatt      4680
     atgtttaggt taaggcatca ttgggacaat tgttgtctgt tggtgtaata taataaataa      4740
     ataaataaa                                                              4749
//
ID   CR1-44_AAe  repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-44_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4552
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1131-1131 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           329..1216
FT                 /product="CR1-44_AAe_1p"
FT                 /translation="MDTKCYQCSTPIKTFEFLQCKLCDXAAHLKCVGLKRS
FT                 NMDFMNEHKNVLWFCDKCVDHLNLLKANPPITSHEIVTGVSEAIKESLADL
FT                 KFDLQKTKELTESIVDKLPTQENLGLNTTRSAWPSIKRTREHVKETPRSRP
FT                 NDKLAVGTKSVEKEQIVVETVPKPTEKFWLYLSRIARHVTEADISELVKNC
FT                 LQTDDPIDVRKLVRKDADLKQFAFISFKIGLDLKLKNTALDPAVWPKGIYF
FT                 REFENMSTERDFWGPAKIPRMDDGTPHVTGTPLIVSSPANRQTPLHQQRNA
FT                 HHKA"
FT   CDS           1216..4440
FT                 /product="CR1-44_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMEAPKPPDTVEPSRSSLVPACSGRPSRSVPVFGTGE
FT                 GVFQHACSGKFNQLGISSLPESILISSAIAATTASLQPTRSDNASVNSLST
FT                 ATSCLRADSEDANVQSALHVNVITTSSTKDDILDIYYQNVGGLNSCLNDYL
FT                 LASSDCCYDIIAFTETWLTQNTLSSQVLDHQYEVFRCDRGPHNSRKTKGGG
FT                 VLLAIRQGIKAHLIEDDTWSSVEQLWLAIELSDHTLYLCVVYIPPDRTRDD
FT                 FLIEAHTNSVSTIVDRASNSDEIVVIGDFNLPGIRWRSSDNGFLYPDACHS
FT                 TLNVSTTKILDRYSTATLRQINHVVNENGRSLDLCFVSSQDVAPNIALAPA
FT                 PFVKPVIHHPALHISFDISNKVESKVDSATIFNDFRNADYDSIQRIFSTLD
FT                 WDELLDVNDVNTAAQTFSHVLWYAINRHVPKKTVSEGRNQWQTPELRRLKR
FT                 QKRAALKKYSKKKTASLRNHYVRVNNIYKSLSRRCFHRYQIGVQRKLKSHP
FT                 KSFWNYAKQQRHVNGLPSSMKWNETIASEPQVICDLFATKFSNIFSEEVLT
FT                 DRQISLASANTQTTGLLMPDVATDDESILTAVRKLKASTCSGPDGIPSVFL
FT                 KNCIDSLLAPLQRIFNLSLSTGVFPSCWKSAYMFPVHKKGDRKDIDNYRGI
FT                 SALCAVSKLFELVVTDRLYFHCKQVLSPDQHGFIPGRSTASNLLCLTSYVT
FT                 DSMLEHAQTDVIYLDLSAAFDKVNHQILLAKLAKLGIHGSLLCWFQSYLYD
FT                 RRSKVMIDDSVSADFAMTSGIPQGSHLGPLMFLLYFNDVNNVLEGPRLSFA
FT                 DDFKLYCKIRSDADAQFLQQQLTAFANWCNVNRMTVNPEKCSIITFSRSKN
FT                 PMAYSYDLNGVLLSRVDQIKDLGVILDSKLTFKQHVSYIVDKASKSLGLMF
FT                 RITKSFTDIYCLKTLYCALVRSTLEYCSTVWSPYYQNGVLRIESIQRRFVR
FT                 FALRLLPWHDPLRLPSYENRCRLISMDTLSTRRDVAKAVLVSDILQGRVDC
FT                 PYILQQINLYVQPRLLRNNALLRPRTSRTNYGMNSAITGLQRVFNRVATDF
FT                 DFNVSRDLLRYRFSNSLR"
XX
SQ   Sequence 4552 BP; 1257 A; 993 C; 959 G; 1340 T; 3 other;
     ctatcgcatt agtttttttt tcactctgtt tgtgttgact atttttcgtt tacattcgaa        60
     cgcaaaattg acgggagtgt attaagcgta tcgtgtttac atctgttttt ttttatcaaa       120
     ctatctcgaa tttgattttg tggaagctgc ctgcaataaa tcgtgtttta tttgcatcgt       180
     tcagtggwca attgtttttg gaacgaattt cttcctgcca tcatacctga cgtcatcgtt       240
     tcgtktttcc gcaatcagcg ccatctgtgg acgaatagtt gcaatcttta tcgatcattc       300
     atcgttcgag tcgacgaaga gagtggaaat ggataccaaa tgctaccagt gctctacgcc       360
     gatcaaaact ttcgagtttc tacaatgtaa attgtgcgat maagcagcgc atctgaaatg       420
     cgtcggctta aaacgctcga atatggactt catgaatgag cacaaaaatg tcctttggtt       480
     ttgtgataaa tgtgttgatc acctcaacct actaaaagcc aaccctccaa ttacttcaca       540
     cgaaattgtg accggggttt ctgaagctat caaggagtct ctggcggatt tgaaatttga       600
     tctccagaaa acgaaggaat tgactgaatc gattgtggat aaacttccta cgcaagaaaa       660
     tcttggactt aatacaactc gttctgcgtg gccaagtatc aaacgaactc gcgaacatgt       720
     aaaggaaacg cctagatctc gtcccaatga caagcttgca gtgggaacaa aatcggtcga       780
     aaaggaacaa atcgttgtag aaacggtacc taagcccacc gaaaagttct ggctgtattt       840
     gtcaaggatt gcccgccacg tcactgaagc tgatatttcg gagttggtga aaaactgttt       900
     gcaaactgat gacccaattg atgtgaggaa gctggtacgc aaagatgcag atttgaaaca       960
     atttgcgttt atttcgttta aaattggctt ggatttgaag ctgaaaaata ccgctttgga      1020
     tcctgctgtt tggcccaagg gtatctactt ccgtgaattc gaaaatatgt ctacggaacg      1080
     ggatttttgg ggaccagcaa aaattccaag aatggacgat ggaacacctc atgtcaccgg      1140
     gacaccattg attgtgtcat ctcctgccaa tcgtcaaaca cctttacacc aacaacggaa      1200
     cgcacatcac aaagcatgat ggaagccccc aagccacccg acacagtcga gcccagccgt      1260
     tcttcgttag ttcctgcttg ttccggccgt ccaagtcgtt ccgttcctgt gttcggaacc      1320
     ggcgaggggg tcttccagca tgcttgctca ggcaagttta accaactcgg aatatcatca      1380
     ctgcctgaaa gtattttgat ttctagtgcg atcgctgcta caactgcttc actacagccg      1440
     actaggagtg acaacgccag tgtgaattcg ctatcaacgg ctacttcatg tttacgcgcg      1500
     gactctgagg atgcaaatgt tcagtcagca ttgcatgtca atgtcataac cacgagttca      1560
     actaaagatg atattcttga catttattat cagaatgtcg gtggattgaa ttcttgcttg      1620
     aacgactatt tgctggctag ctcggattgt tgttacgaca tcattgcgtt taccgaaacc      1680
     tggttgactc aaaacactct ctcgagccaa gtcctagatc atcagtatga agttttccgt      1740
     tgcgatcgtg ggccacataa cagcaggaaa actaaaggtg gtggagtcct ccttgctatt      1800
     cgacaaggca taaaagctca cttaattgaa gacgatactt ggtcttcagt tgagcagttg      1860
     tggttggcaa ttgaactatc ggatcacacc ctctatctgt gcgttgttta catccctccc      1920
     gatagaacgc gtgacgactt cctaattgaa gcacatacta attccgtttc aactatcgtt      1980
     gacagagcct cgaattctga cgaaattgtg gtaattggcg acttcaattt gcctggtatt      2040
     cgctggcgat cttcggacaa tggtttcctt tacccagatg cttgtcattc aacgttgaac      2100
     gtgagtacaa ccaagattct cgaccgttac agcaccgcta cacttcggca aattaatcat      2160
     gtagtgaatg agaacggccg cagcctcgat ctatgttttg ttagttccca agacgtggct      2220
     cctaatatag cattagctcc agcaccattt gtgaagcccg tcatccatca tccagcatta      2280
     cacatcagct ttgatataag taacaaagtt gaaagtaagg ttgattcagc tactatcttt      2340
     aacgacttca ggaatgcaga ctatgacagt attcaacgta ttttttcaac gctagattgg      2400
     gacgagcttc tcgatgtaaa tgatgttaat actgcagcac aaacattttc acatgttttg      2460
     tggtacgcga taaaccgaca tgtcccaaaa aagacagtct ctgaaggtcg taatcagtgg      2520
     cagactccgg aactccgtag attgaagaga caaaagagag cagcgctaaa aaagtactcc      2580
     aagaagaaga ccgcgtcatt gaggaaccat tacgtgcgag ttaacaacat ctataagagc      2640
     ctaagcaggc gatgctttca tcgataccaa atcggagttc aacggaaact caaatctcac      2700
     ccaaaatcgt tttggaacta tgccaaacag cagcgtcatg tgaatggtct accatcttcg      2760
     atgaagtgga acgaaacgat tgcttccgag ccacaagtta tatgcgacct gtttgcaacg      2820
     aagttttcta acattttctc tgaggaggtg ctcacagata gacagatatc gttagcatct      2880
     gccaacacac agaccacagg acttctcatg ccggatgtgg ccaccgatga tgaatctatt      2940
     ttaacagcag tacgtaaact gaaagcatca acttgctcag gacctgatgg aattccgtcg      3000
     gtatttttga aaaactgcat agacagcttg cttgcacccc tgcaaaggat ttttaatctg      3060
     tcactttcga ccggagtatt tccatcctgc tggaagagcg cctacatgtt tccagtacac      3120
     aaaaaaggtg ataggaagga catcgataac taccgtggaa tttctgcgtt atgtgcagtc      3180
     tctaaactct ttgagcttgt cgttacggat cggctctatt tccattgcaa gcaagtcttg      3240
     agtccagacc agcatggctt tattccagga cgttcaactg cgtcaaactt gttatgttta      3300
     acttcctacg tgactgacag tatgctcgaa catgcacaaa ctgatgtgat ttacctggat      3360
     ctttctgctg ctttcgataa ggtcaaccac caaattctct tagcaaagct ggcaaagttg      3420
     ggcatacacg gcagtttatt gtgttggttt caatcctatt tatatgatcg ccgttcaaaa      3480
     gttatgatag atgattcagt ctccgctgat tttgcaatga catctggaat cccgcagggt      3540
     agtcatctag ggccattgat gtttcttctg tatttcaatg atgtcaacaa tgtgctcgaa      3600
     ggaccaagac tttcttttgc ggatgatttt aagctttatt gtaaaatccg ctctgacgct      3660
     gatgctcagt ttctgcaaca acagctgact gcctttgcca attggtgcaa tgtgaatcgc      3720
     atgactgtga atcctgaaaa atgttctata ataacgtttt ctcgttcgaa gaaccctatg      3780
     gcctatagtt atgacctcaa tggcgtgctt ttgagtagag tagatcaaat caaagatcta      3840
     ggtgtgattc tcgattctaa attgacattt aaacaacatg tatcatatat agtggacaaa      3900
     gcttccaaat cacttggttt aatgtttcgt atcactaaat catttacgga catttactgc      3960
     ttaaagacgc tatactgtgc attagttcgg tccactttgg agtactgttc aaccgtatgg      4020
     agtccttact accaaaatgg agtcttgaga atcgagtcaa ttcaaagacg gtttgtccgt      4080
     tttgctcttc gtctgttgcc ttggcatgac ccgcttcgtc tcccttctta tgagaaccgg      4140
     tgtcgtttaa tcagtatgga caccctcagc actcgtagag atgtcgccaa ggctgtttta      4200
     gtatccgaca ttcttcaggg ccgtgttgat tgcccttaca ttctgcagca gataaatctc      4260
     tacgtccagc caagactgtt gcggaacaac gcgttgctgc gtcctcgcac ttccaggact      4320
     aattacggaa tgaacagtgc aattacaggc ttgcaaagag tattcaatag ggtggcaact      4380
     gattttgatt ttaatgtgtc ccgtgatttg cttcgctata ggttttctaa ctctttaagg      4440
     tagacagtaa gattgtgtgt tttttttatt gttttaatgt taacgacaac aattaataca      4500
     tcattggggc taggagcctg ttgatgttca aataaataaa taaataaata aa              4552
//
ID   CR1-45_AAe  repbase;    DNA;    INV; 5021 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-45_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5021
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1132-1132 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 23 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           431..1258
FT                 /product="CR1-45_AAe_1p"
FT                 /translation="MSTACDRCAKAIKRNDEVITCMGFCDHIVHLRCANID
FT                 KNFAKSISDATNLYWMCDECAKLMKLVRFRNAVSSVGDAICELTKNQEVAN
FT                 TELKNELVKHSQQIAHLSNRINSITPSMPISAERRAMKRRRIDNDNQPAKS
FT                 LVGGTRIADNNGVATVPVPSTMFWVYLSRLHPSVNYEAVEKLARECLQCEA
FT                 AKAVPLVKQGTDVNSLNFISFKVGVDPKFRAVALDPSSWPKGILFREFEDS
FT                 RRGNYWMPEPSTPSIIVTSDAEETPQQASMEATEN"
FT   CDS           1262..4948
FT                 /product="CR1-45_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PLGTHSTGRRKQPRRIVESTLETSSQYDSVLPFAVIG
FT                 LQSRRGPDVETVEEVLQSASPGKYNYFQEQALPDQFPASSRGTSSRRILLS
FT                 PDLINHVSIVSDPNFNFNQFDEASFTPGRTSASLMEGPNQPSAVEPLLPSI
FT                 ISRPGPVTGFGIGLFQAAYSGKYTSNMCSMIPDALTNSSFPSPPTTLLDFQ
FT                 ILGRTDTSVMEAPEPPATVELTQPAIDSRLSPVCGSGAGVFQSSVNGKYAT
FT                 LSNNAIVDVMTASSSSLPVDNTIIATSSPFQADNIWLYYQNVRGLRTKIDD
FT                 FYLATNDCNLDVIILTETGLDDCINSIQLFGTIYNVYRCDRSTRNSHKTCF
FT                 GGCLIAVGQQYPSSLIELSNGQNLEQICVSSIIKGQKLKLMVVYIPPDRSQ
FT                 DVSTIEAHIASVQELCDKSSSDDKVIVCGDYNQPRLSWTVGTEGLTPNGSR
FT                 VLPPAAAALVDGFDFLNMTQANNHLNHLGRVLDLVFSTSGDINVLRADFPL
FT                 LPIDPHHPPLDISVAASSTQRSISSHRESRVLNYRRLDFVALTEYLSNVNW
FT                 NELLNVQDVNEMTERFCRAICSWLNDNLPVKRPPVQPVWSTSELRRLKRDR
FT                 NAKQRKLRRHRSAENQRAFKTAADSYHRLNTLLYKSHVSRVQAGIRRDPKN
FT                 FWGFVNSKRNSPSIPSNVYLDETESASVEESCELFAEFFASVFSPGSTSQQ
FT                 EADAAASNLPTDAVDIDIFNITSDMIITASRKLKSSYSPGPDGVPAVIFRR
FT                 CIASLAVPLSRIFNTSFEQKTFPDMWKQSFMFPVFKKGDKRNVKNYRGITS
FT                 LSAGSKLFEIVVSSVILNYSKSYISVNQHGFMPGRSVTSNLLDFTSACISQ
FT                 IETKAQVDAVYTDLKAAFDVIDHRILLCKLSRIGISDRLLSWLESYLSNRI
FT                 LRVKLDSAVSRAFSNSSGVPQGSNLGPLLFALFFNDVALLLGSEYVLIYAD
FT                 DLKIYLTVKSVEDCRRLQGLINTFADWCRLNKLLISVSKCMVITFHRSKNP
FT                 IIFDYRIEGNVLERVDQISDLGIILDAKLSFNQHISSMISKASRQLGFVTK
FT                 VSREFTDPHCLKTLYCALVRPILENASIIWTPYHLSWNIRIERIQRRFIRI
FT                 ALRSLPWRDPQNLPPYNERCRLLGLDSLQRRRSIQQSIFVAKLLNGEIDAP
FT                 ALLTRVNFRTMGRQLRSSTMLTTRFHRTSYGCNEPLTACLRTFSLVEELFD
FT                 FGETTGCFKRRVTSSRILQ"
XX
SQ   Sequence 5021 BP; 1323 A; 1196 C; 1054 G; 1448 T; 0 other;
     ttctggcatc actgttgaat gtttgtatgc tgtttttcgg cccggagttt ttaactcatt        60
     agaaagtgaa atcggcgtca taaaaccgtt attttgtttt cgtatgtttg gagtgactct       120
     gtgaattgta ctcgtgtgtt aattagtgtc cattgccgtc gtgatacatt atcacttatt       180
     gcgagtgaac tgtgttttgt ttgctccact tgttcacaaa agcttacctg ccccataccg       240
     attttccact gaaagacatc tgttggtggg ttacacaagc tttaactgca agctctggag       300
     ttccatcgat ttcatcgact accgaggaat acttttggta ttgtgatagt ggtgatacac       360
     attcaaccat aaccatacac agctagcaat ttgttcttcg tgtgtagaaa ggctcaggag       420
     tatttacgac atgtccaccg cttgcgatcg ttgcgccaaa gcaattaagc gtaacgatga       480
     agtgatcacg tgtatgggct tctgcgatca tatcgtccac ctcagatgcg caaatattga       540
     taaaaatttt gccaaatcca tttctgatgc gaccaatttg tattggatgt gtgatgaatg       600
     tgcaaaatta atgaagcttg tacgtttccg taatgccgtc tcttctgttg gtgatgcgat       660
     ttgcgaactt accaaaaatc aagaggtggc gaacaccgaa ctgaaaaatg aactcgtcaa       720
     acatagccaa caaattgctc atctttcgaa tcgaatcaac tctatcacac catcaatgcc       780
     catctccgct gaacgtcgcg cgatgaaacg tcgccggatc gacaatgata atcagcccgc       840
     taaatcactt gtcgggggaa ctaggatcgc tgataacaat ggtgttgcaa ctgtaccagt       900
     accctccacc atgttttggg tttacttgtc tcgcttacat cccagtgtga attacgaagc       960
     tgttgaaaaa ttagcacgag agtgcttaca atgcgaggcg gcgaaggctg tgccattggt      1020
     taagcaggga accgatgtga attctttgaa cttcatttcg ttcaaagttg gcgtcgatcc      1080
     taaatttcgt gctgtagcgc tggatccttc ttcatggcct aaaggtattc tcttccgaga      1140
     atttgaagat agtcgtcgtg gaaactattg gatgcctgag ccaagtactc cttctattat      1200
     cgttacgtct gacgctgaag aaactcctca acaagcatcc atggaggcca ccgagaattg      1260
     acctcttggt acacactcta ctggacgaag gaagcaaccg cgacgcatcg tagaaagcac      1320
     tttggagacc tcttctcagt acgactcagt cctgcctttt gctgtcatcg gtcttcagag      1380
     tcgtcgcggt cctgatgtcg aaactgttga agaggttctc cagtctgcat ccccaggcaa      1440
     gtacaactac tttcaagagc aagcacttcc tgatcaattt cccgcttcca gcagaggcac      1500
     atccagtcgt cgtattttac tatcacctga ccttatcaac catgtgtcca tcgtttctga      1560
     cccgaacttc aattttaatc aatttgacga agcatcattt actccgggac gcacatccgc      1620
     tagtcttatg gaaggcccta accagcccag cgcagtcgag cctttgctgc catcgatcat      1680
     cagccgtccc ggtcctgtga ctgggtttgg gatagggctc ttccaagccg cctactctgg      1740
     caagtataca tccaacatgt gcagtatgat tcctgatgcg ctcaccaatt ctagctttcc      1800
     atcaccgcct acaacgctac tcgattttca aatactggga cgcactgaca ctagcgtcat      1860
     ggaagcccca gagccccccg ccacagtcga gctaactcag ccagcgatcg acagccgtct      1920
     cagtcctgtg tgcgggagtg gtgcaggggt cttccaatct tccgtcaatg gcaagtacgc      1980
     tactttatcg aacaatgcaa tcgttgatgt aatgaccgct tctagctcat cactccctgt      2040
     cgacaatact atcatcgcta ccagttctcc gtttcaagct gacaacattt ggctgtatta      2100
     ccagaacgtt cgtgggttaa gaacgaagat tgacgatttc tacctcgcca ccaatgactg      2160
     caacctcgat gtcattattc taactgaaac tggtttagac gattgcatca actctataca      2220
     gctctttggt actatctaca atgtataccg ctgtgatcgc agcaccagaa atagccataa      2280
     gacatgtttc ggtggctgtc tcattgctgt tggtcagcag tatcctagct cattgattga      2340
     actaagtaac ggccaaaact tggaacaaat ttgcgtatca tctattatca agggacaaaa      2400
     gctgaaactg atggtagtct acattccccc tgatcgaagc caggatgttt caaccattga      2460
     ggcacatatc gcatctgtgc aagagctgtg tgacaaaagc tcctcggatg ataaagttat      2520
     agtatgcggg gattacaatc aaccgcgatt gtcatggacg gttggtaccg aaggtcttac      2580
     ccccaacggt tctcgtgtcc taccccctgc cgccgctgct ttagttgacg gtttcgactt      2640
     cctcaacatg acacaagcta acaaccatct caatcatctc ggcagagttc tggaccttgt      2700
     attttccact tccggagaca tcaacgtctt gagagctgac ttcccgttac tgcctatcga      2760
     tcctcatcac cctccgttag atatttccgt ggctgcttca tcaacgcaac gtagcatttc      2820
     tagtcatcga gaatccagag tgctaaacta tcgtcggctc gattttgttg cgcttaccga      2880
     gtacttgtca aacgtgaatt ggaacgagtt gttgaatgta caggatgtga acgaaatgac      2940
     ggagcgtttc tgtcgcgcta tttgctcttg gcttaatgac aacctccctg taaaaaggcc      3000
     accagttcaa ccagtatgga gcacttcaga actgcgtagg ttgaagcgtg atcggaatgc      3060
     caaacaaaga aagcttcgta gacatcggtc tgccgaaaat caacgagcct tcaaaacagc      3120
     tgctgactct tatcatcggt tgaatactct cttgtataag tcacacgttt cgcgtgttca      3180
     agctggcatt cgtagagacc cgaaaaattt ctggggattt gtgaattcaa aacgaaatag      3240
     tccgtccatc ccgtccaacg tttatctcga cgaaactgaa tcggcttcag tggaagaatc      3300
     ttgcgagtta tttgccgagt tttttgcatc cgttttctca ccaggtagta cttctcaaca      3360
     ggaagccgat gctgcagcgt cgaatcttcc tactgacgct gtcgacattg atatcttcaa      3420
     tattacgtca gatatgatta tcaccgcctc caggaaatta aaaagttcgt actcaccagg      3480
     tccagatggt gtgcctgcag taatttttcg tcgctgtatt gcctctctag ccgttccctt      3540
     aagtcgtata ttcaatacgt cttttgagca gaaaaccttt cctgatatgt ggaaacaatc      3600
     tttcatgttt cccgttttca agaaaggtga taaaagaaat gtgaagaact acagaggaat      3660
     aacaagcctt tctgccggat cgaagctgtt tgaaattgtt gtcagcagtg tcattctcaa      3720
     ctacagcaag agctacatct cagtgaatca gcacggattt atgccaggga gatctgtcac      3780
     atcaaacttg ctcgatttca ccagcgcatg catctcacag attgaaacta aagcgcaggt      3840
     tgacgctgtg tatacggact tgaaggccgc cttcgacgtt atagatcacc gtattcttct      3900
     gtgtaaactt tctcgcattg gcatatctga tcgacttttg tcatggttgg aaagctattt      3960
     atctaaccga attctgcgag ttaagcttga ttccgctgtt tcgcgtgcat tcagcaatag      4020
     ttcaggtgtc ccacaaggaa gcaatcttgg ccctctgctt ttcgcattgt tctttaacga      4080
     tgttgcactt cttttgggtt ccgaatacgt acttatatat gccgatgacc tgaaaattta      4140
     tcttactgtc aaatctgttg aggactgtag gcggcttcaa ggtctgataa atacttttgc      4200
     agactggtgt agattgaaca agctcttaat aagcgtttct aaatgcatgg ttataacatt      4260
     ccaccgatca aaaaatccca tcatctttga ttatcgcatt gaagggaacg tacttgaacg      4320
     agtcgatcag ataagtgatt taggtatcat cctggatgct aaactcagct tcaatcaaca      4380
     tatttcgagc atgatctcaa aagcatctcg tcaacttggc tttgttacga aagtttctcg      4440
     tgagttcact gacccgcact gcctcaaaac tctctactgt gcattagtac gtccaatact      4500
     cgaaaatgct tcgattatat ggactcctta tcatctgtca tggaatatca gaatcgagcg      4560
     tattcagcgc agattcatcc gtattgcgct acgaagtctg ccttggcgag atccacaaaa      4620
     cctaccaccg tataatgagc gatgccggct tctaggactt gattcactgc agcgacggcg      4680
     aagtatccaa caatctattt tcgttgctaa actgctgaat ggagagatcg atgcacctgc      4740
     gcttctaact cgtgtcaact tccgtacaat gggcaggcaa ttgaggtctt caactatgtt      4800
     gacaacaaga tttcaccgca cttcttatgg ctgtaacgaa ccactgaccg catgtttgcg      4860
     aaccttttct ttagttgaag agctgtttga cttcggagag actactggat gctttaaacg      4920
     gagggtgact agttcaagga tactacaata actattaagt atattcatgt agacaactgt      4980
     cagatgaatt aatcaaataa ataaataaat aaataaataa a                          5021
//
ID   CR1-46_AAe  repbase;    DNA;    INV; 4766 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-46_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4766
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1133-1133 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..687
FT                 /product="CR1-46_AAe_1p"
FT                 /translation="MMNNVDTKYSALPDAVQSMQSKIENLQSAVEALTAKV
FT                 EDKPCTPTPFVTPNLWPTRNRINTPFGSTKRRRINDEALTNVPLVTSNFGT
FT                 KSTGVIKTVQLNQRDDDNLLWIYLSAFHPNTSEGQIASLVSECLELLNIPK
FT                 VVKLVPKGKDPNSLQFVSFKVGVASQLKEKALACDTWPENIRFREFEDLRS
FT                 KNGPKIVSLLPTGPPSVMNTTESSSIA"
FT   CDS           732..4727
FT                 /product="CR1-46_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPSDPVTVEPFPAIINPHQLTQDKPTTSRHSRPGP
FT                 VYGGLEGVFQPSLSGKYFRHINNFFPDGASIFSSSQAGFDNKRTQSTGQLS
FT                 PKLAIGESATSQPGRTPRRTLEAPSDPVTVEPTSSTTINLASCRRSRPGPV
FT                 YGGLEGVFQPALPGKYTHNSSRPLLEDYPNCSPSVDTCQYVEQVPSVSHSN
FT                 AATINSSPLHSRPASNQPGRTPRSSMEVPSDPVTVEPFCARGGARGPGRPR
FT                 GAAGGPGRAPRRPGRGAPPRRRGAAPRGAAPRAAPPVTSIKQVSSRRSRPG
FT                 PVHGGLGGIFQPASPGKYACNISRPVPEDHSDFSSTINDINDRTSSANMPV
FT                 FEDVSRRSLDSAVGRNYGCSNRLASNLHVYYQNVGGMNSTINDYLLASTDN
FT                 CYDIIALTETWLNERTSSSQVFDSNYAVFRCDRCSSNSRKSAGGGVILAVR
FT                 QQLKPRMVPNDSWTSVEQVWVEIPLSDRSLFFCVVYLPPDRVRDASLIAVH
FT                 TESIAIIRAKLKPVDEIVIIGDFNLPGIKWLPTRFGFMHPDADRSTLPTST
FT                 TSLLDSYSTNLLQQINPVENSNGRILDLCFVSNVDYAPVISEAVAPLVKLV
FT                 NHHPPLHIVLENRSNDCFRQTVAAVYYDFKNADFDAISDVLSNIDWEDVLG
FT                 DDEIDTAVQYFSNIMNYVIDRHVPKRVNSKHTQTPWQTNELRSIKTAKRAA
FT                 LRYYTKHRTESSRHYYVQLNNEYKRMNQSCYQSYMKNMQLKLKANPKSFWK
FT                 FVNDQRKESGLPTTMMYEGNWSSDPKIVCDFFADKFGGVFSEEGITPQQIE
FT                 AAVEDVSYLGESITHIDVDRSMIMTATSKLKASCSTGPDGIPPILLKKCAS
FT                 SLVVPLQRIFSLSLATGKFPDSWKSAFLFPVHKKGDKMHIQNYRGISALSS
FT                 VAKLFELVLLEPMFSHCRHYIVEEQHGFMPKRSTSTNLLSFTSYITEGFNN
FT                 AKQTDAIYLDLTAAFDSINHEIALAKLEKLGFGGRILGWLRSYLIGRQLEV
FT                 RIGDVTSHKFAAPSGVPQGSHLGPMIFLLYFNDVNKKMKVPRLSFADDMKI
FT                 YFQVSSIADAHILQQDLIHFADWCSTNRMRVNPSKCAVISFCRKKEPLLFE
FT                 YNIFGTSIERTSCIKDLGVQLDSKLSFQQHISYMVGKASRSLGFLFRVGKE
FT                 FTDIYCLKNLYCSLVRSTLEYCSPVWNPYYNNAVERIEAVQRRFIRFALRR
FT                 LPWSNPFSLPSYESRCQLIQLETLTIRRNVARALFVSDVFTSRIECQVLLN
FT                 SIQLQVQPRTLRNRSFLQIPLRRTNYGSYGAIVGLLRLFNRVADYFDFHLS
FT                 REAIKRNFKRVFCRYSIIRA"
XX
SQ   Sequence 4766 BP; 1257 A; 1237 C; 1034 G; 1238 T; 0 other;
     tgttcagaac tttttgcaaa tacagttttc cgcgaaatga tgaacaatgt cgacaccaag        60
     tattctgctc tgccagatgc agtccaatcg atgcaatcga aaattgaaaa tttgcaatcg       120
     gcagtggagg ctttaacagc aaaagtggaa gacaagcctt gcactcccac tcccttcgtt       180
     acgcccaacc tatggcccac caggaatagg atcaacactc cattcggctc aactaaacgt       240
     cgcagaataa acgatgaagc tctgacgaac gtgccattag ttacaagcaa ctttggtact       300
     aaatcaactg gtgtcatcaa aactgtacaa ctcaatcagc gcgacgacga caatctactt       360
     tggatttacc tctctgcctt ccacccaaac acttcagagg gtcagattgc ttcactagtt       420
     agtgaatgct tggaattgct caacatacct aaggttgtta aattagtccc caaaggtaaa       480
     gacccgaatt cgctgcaatt tgtgtctttc aaagttggtg tcgctagtca gttgaaagaa       540
     aaagctctcg cctgcgacac ttggcccgaa aatattcgtt tccgggaatt tgaagatctt       600
     cgatcaaaaa acggacccaa aattgtgagc ttgctgccga cgggaccgcc atctgtaatg       660
     aacaccacgg aatcgagttc aattgcctga atgttccatc tagtctacca ggacgcacgt       720
     tagaaagccc tatggaagct ccctctgacc ccgtaacagt cgagccgttt cctgccatca       780
     tcaatccaca tcaactcacc caagacaaac caactaccag tcgtcacagt cgtcctggcc       840
     ctgtttacgg aggtttggag ggggtcttcc aaccttcact ttcaggcaag tatttccgac       900
     acatcaacaa tttcttccct gatggtgctt cgattttcag ttcctctcaa gctggttttg       960
     acaacaaacg aactcaatct actggtcagc ttagtccaaa actcgccatt ggtgaatccg      1020
     ctacaagtca accaggacgc acgccaagac gcacattgga agccccttct gaccccgtga      1080
     cagtcgagcc tacttcttca accaccatca atctcgcttc ctgccgtcgc agtcgtcctg      1140
     gtcctgtcta cggaggcttg gaaggggtct tccagcctgc acttccaggc aagtatacgc      1200
     ataactccag tcgacctctc cttgaagatt atccaaattg cagtccttcc gtcgacactt      1260
     gccaatacgt cgaacaagtg ccatccgtaa gtcactcaaa cgcagctaca ataaattcga      1320
     gcccacttca ttcgagacca gcatcaaacc agccaggacg cacgcccaga agctctatgg      1380
     aagtcccttc cgaccccgtg acagtcgagc cattctgcgc ccggggcggc gcgcgcgggc      1440
     ccggccggcc ccgcggcgcg gcgggcggcc ccgggcgggc cccgcggcgc cccggccggg      1500
     gcgccccgcc gcgccggcgg ggggccgcgc cccgcggcgc cgccccgcgc gccgcgccgc      1560
     ccgtcaccag catcaaacaa gtttccagcc gtcgcagtcg tcctggtcct gttcacggag      1620
     gtttgggagg gatcttccaa cctgcctctc caggcaagta tgcgtgcaat atcagtcgac      1680
     ctgtccctga agaccattcc gatttcagct cgacaatcaa tgacatcaac gatcgtacgt      1740
     cttctgcaaa catgccagtc ttcgaagatg tttctcgccg tagtctcgat tcggctgtgg      1800
     gcaggaatta tggttgcagt aatcgactcg cttcaaacct acatgtgtac taccagaatg      1860
     ttggcggcat gaatagtacc ataaacgatt acctgctggc cagtactgac aactgctacg      1920
     acatcattgc tctcactgaa acgtggttga atgaacggac atcatcatcg caagttttcg      1980
     atagtaatta tgccgttttc cgttgcgatc gttgttcatc aaatagtcgc aaatcagctg      2040
     gaggtggggt tatccttgca gtacgccaac agctgaaacc acgcatggtc ccaaacgact      2100
     cttggacaag cgtcgaacaa gtgtgggtcg aaataccact gtccgaccga tcacttttct      2160
     tttgcgtggt ttatctgcca cccgaccgtg tccgagatgc atccttaata gcagtccaca      2220
     ctgaatcgat tgcaatcatt cgtgcaaagc tgaaacccgt ggatgagatc gtgattattg      2280
     gcgacttcaa tctccctgga ataaaatggt tacccacccg ttttggtttc atgcacccgg      2340
     acgccgatcg ttctacgctt ccaaccagta ctactagttt gctcgattcg tatagtacca      2400
     atttgctgca gcaaatcaac cccgttgaga acagtaatgg aagaattttg gatctctgct      2460
     tcgtaagcaa cgtcgactat gctcctgtaa tctccgaggc tgttgctccg ctcgtcaaac      2520
     tcgttaatca ccaccctcca ctgcacattg tcttagaaaa ccggtctaac gattgcttca      2580
     gacaaacggt agctgcagta tactacgatt ttaaaaatgc tgactttgac gcaatttctg      2640
     acgtcctatc gaatatcgat tgggaagacg ttttaggtga tgacgaaatt gatactgcag      2700
     tgcaatattt ctccaatatt atgaactacg tgattgatag acatgtgcct aaacgagtta      2760
     attccaagca cacacaaact ccttggcaaa caaacgagct acggtcaatc aaaactgcta      2820
     aaagggcggc attgcgatac tatacaaagc accggactga atcgtcaaga cattattacg      2880
     ttcaactgaa taacgagtat aaacgaatga accaatcgtg ttaccaatcg tacatgaaaa      2940
     acatgcagct caagctgaaa gcgaacccga aatctttctg gaagttcgta aacgaccaaa      3000
     gaaaggaatc tggtctaccc acgacgatga tgtatgaggg aaattggagc tccgacccta      3060
     aaatcgtttg cgactttttt gccgataagt ttggtggcgt tttttcggaa gaagggatta      3120
     cgcctcaaca aattgaagca gctgtggaag atgtctccta tctcggcgaa tcaatcactc      3180
     atatcgatgt tgatcgatca atgattatga cggctaccag taaacttaaa gcttcttgct      3240
     ccacgggccc cgatggaatc cctcctatct tgctgaaaaa gtgtgcttcg agtttggttg      3300
     ttcctcttca gcgcatattt agtttgtcgc tagccactgg caaattccca gactcatgga      3360
     agtctgcatt cttgtttcct gttcacaaga aaggtgacaa aatgcacatc caaaactacc      3420
     gtggaatatc cgctctgagt tcagttgcta aactctttga gcttgtgcta ctggaaccta      3480
     tgtttagcca ctgccgacat tacattgttg aagagcaaca cggcttcatg cctaagcgat      3540
     ctaccagtac aaatctgctt tcttttactt catacattac cgaaggcttt aataacgcaa      3600
     agcaaactga tgcaatttat ttggacctca ctgctgcctt cgacagcatt aaccatgaaa      3660
     ttgcgttggc taaattagaa aagcttggtt tcggtggcag aattcttggc tggttgcgct      3720
     cctaccttat tggccgccag ctcgaagtga gaattggaga cgtcacctca cacaaatttg      3780
     ctgctccgtc aggcgttcct caaggcagcc acctcggtcc aatgatattt cttctttact      3840
     tcaacgacgt caataaaaaa atgaaagttc ctcgtttgtc gttcgccgac gatatgaaaa      3900
     tttattttca agtaagttcg atcgctgatg ctcacattct ccagcaggat ttgatacact      3960
     ttgcggattg gtgcagtaca aaccggatga gagtcaaccc aagcaagtgt gccgtcatat      4020
     ctttttgccg gaagaaggaa cctttgttgt tcgaatacaa tattttcggc acttctatcg      4080
     aaagaaccag ctgcataaag gatctagggg tgcagcttga tagcaaatta tctttccagc      4140
     agcacatatc atacatggtc gggaaagcct ccagaagcct cggatttctg tttcgtgtcg      4200
     gcaaggagtt tactgacatc tactgcctga agaatttata ctgctcgctg gtgcgttcca      4260
     ccctagaata ttgttcgccg gtttggaatc cttattacaa taatgcagtg gaaaggattg      4320
     aagctgtaca gcgaaggttc atccgtttcg ccctgcgacg ccttccatgg agcaacccat      4380
     tcagtttacc cagctacgag agccgctgtc agctcataca gttggaaacg ctgacaatac      4440
     gtcgtaatgt tgctcgtgcg ttattcgttt cggatgtctt cacttccagg atcgagtgcc      4500
     aggtattgct caacagtatc cagctgcagg tgcaaccaag aaccctacga aaccggagtt      4560
     ttctacaaat tccccttcgg cgtacgaatt acggatctta tggggccatt gttggtcttc      4620
     taaggctttt taatagagtt gcagattatt tcgatttcca tctgtctaga gaagcgatca      4680
     agcgaaattt taaaagagtt ttttgtagat atagtatcat tagggcttag tattagcctg      4740
     ttgatggaac aaataaataa ataaat                                           4766
//
ID   CR1-47_AAe  repbase;    DNA;    INV; 3948 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-47_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3948
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1134-1134 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           427..3825
FT                 /product="CR1-47_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGTPSDPVTVEPNHHATSNSSVCASCHLRRPGPVYGG
FT                 LEGVSQPAFPGKYAYHNGHSLDDVSNNSSSTENDDPPASLHQNSYSTSQFH
FT                 LPGRNVESLMEAPGPSDPVEQIAASVLHSRPGPVVSCGAGVFQSVTSGEYP
FT                 FNTSHEQPILEEPNSRISERNSDSATKSLGRYDDVLVYYQNAGGMNGDVDK
FT                 YLLATSDECYDVIVLVETWLDSRTLSGQVFGAEYEVFRCDRGPLNSRKSTG
FT                 GGVLVAIKRKYKPSVINSDEWVSIEQIWVSFQLSNRKVFLCAVYVPPDRTR
FT                 DVALIDLHSRSIMSAIDMADATDEIVIFGDFNLPGISWQSSDNGFLHPNPD
FT                 RSTLHIGASRLLDSYSSATLRQINYTTNENGRSLDLCFVSAQNTAPSISVA
FT                 PSPLVKQVYHHPALVLILNDSKVPELKSVDPISYDFRNADHDRIVEFLSAI
FT                 DWDLVLDGRDVNNAALTLSHILGHVIERHVPKICHPAKSKPWMTRELRMLK
FT                 TAKKSALRKYSKHHTVSLQEHYRKLNSAYKVSSRNSFRRYQQNLQRNLKAN
FT                 PKFFWKYVKDQRKEAGYPSTMTLNGEVTSEPRRICQFFADKFSSTFSNEFV
FT                 SEEQIIQAASNVPLLAGDSFGTLNIDDAMISRAASQLKSSTNTGPDGIPSV
FT                 FVKKYIENLLVPLRHVFNLSMSSGDFPSVWKTAVMFPVYKKGERRDVNNYR
FT                 GVTSLGAISKLFELVVMDPLLSHCKQYLSDAQHGFISGRSTASNLLCLTSH
FT                 ITESLAERAQTDVIYTDLSAAFDRVNHAITIAKLERLGICGSVLRWLHSYL
FT                 TGRKLTVTVEDIISDEFLATSGIPQGSHLGPLIFLLYFNDVNYVLKGPRLI
FT                 YADDLKIYRRIRSESDARILQQEIDTFTNWCTLNCMTVNPSKCSTITFARI
FT                 RQPIVFNYNLRGNEIERVDHVKDLGVILDPQLTFKRHVAYTVEKASRTLGF
FT                 IFRIAKDFTNMNCLKSLYCSLVRSTLEYCSVVWNPYYQNGTERIESVQRRF
FT                 IRFALRRLPWRDPFRLPSYESRCQLIHMETLQVRRNIARAMFVTDTLQGRI
FT                 DCSTILRTIDLNVRPRALRNNSLLRLQFRRTNYGQHSALNGALRVFNRAAS
FT                 CFDFNLSRATIRRNLSVFFSRRMDE"
XX
SQ   Sequence 3948 BP; 1065 A; 976 C; 851 G; 1056 T; 0 other;
     gttcaactat ttgtcttgat tcacgccaag aagatgactt gatatggatc tacttgtccg        60
     cgttccatcc gaatacgact gaaaaccaaa tttcttcgtt tgtcagggag tgctgtgaac       120
     tgacagccaa cgctcatctc aaagtgatta aactggtgcc aaaaggaaag gatttgaata       180
     cgcttaatta cgtgtccttc aaaattggtt aagcgttcaa ttcaaggaaa aagctttctc       240
     gtgtgaaacg tggcctgaaa acatacgttt tcggcaattc gaagataatc gagcaaaaaa       300
     cttaccgaga gttatcagcc tgtcttcaac gatacaacaa ggaacgactg ttccgcctcc       360
     catggactct tcgagcttgg acatctaggg gtcagcatcg caccaggacg cacgcaacga       420
     agcacgatgg gaactccttc tgaccccgta acagtcgagc caaatcacca cgccacctcg       480
     aattcctccg tttgtgcatc ctgccatctt cgtcgtcctg gtcctgttta cggcggtttg       540
     gaaggagtct cccagcctgc atttccaggc aagtatgcgt atcacaacgg tcattcactc       600
     gatgacgttt caaacaattc tagctctacc gaaaacgacg atccaccagc gagtttgcac       660
     cagaactctt attcaacgtc ccagttccat ctaccgggcc gcaatgtgga aagccttatg       720
     gaagctcccg gcccttctga cccagtcgag caaatcgccg cctccgttct tcacagtcgt       780
     cccggccctg tggttagttg tggcgcggga gtcttccaat ctgttacctc aggcgagtat       840
     ccttttaata caagtcatga acaaccgata cttgaagaac caaattccag aatctctgaa       900
     cgaaattccg actcagcgac taaaagcctt ggtcgttacg atgacgtgct ggtctactac       960
     caaaatgccg gagggatgaa tggagatgtt gacaagtatc ttctagctac atccgacgag      1020
     tgctatgatg ttatcgtctt ggtagaaacg tggctcgatt ctcgaaccct ttcgggacaa      1080
     gttttcgggg cagaatatga agtttttcgt tgcgaccgtg gacctttgaa tagtcgcaaa      1140
     tcaacgggtg gcggcgttct tgttgcaatc aagcggaaat ataaaccaag cgtcatcaac      1200
     agcgatgaat gggttagcat cgaacaaata tgggtgagct tccagctctc aaatcggaag      1260
     gtgttcttgt gtgcagttta cgtgcctccc gatcgaactc gcgacgtggc actgatcgat      1320
     cttcattccc gatcgattat gtcagcgatc gatatggcag atgcgaccga cgaaatcgtc      1380
     atctttggag atttcaactt gcccgggata tcctggcaat cgtctgacaa tggtttccta      1440
     cacccgaatc cagaccgttc cacgttgcat atcggagcat caagacttct cgacagctac      1500
     agctctgcta cgttgcgaca aattaattac acaacgaatg aaaacggtcg ctctctagat      1560
     ttatgtttcg tcagtgcaca aaataccgct ccatcaatct cagttgctcc atcgcctttg      1620
     gtcaaacaag tataccatca ccctgctttg gtcctcattc taaacgattc gaaagtacct      1680
     gaattgaagt cggttgatcc gatttcctac gactttcgta acgcagacca tgatcgcatt      1740
     gtcgaattcc tttctgcgat tgattgggac cttgtactcg atggtcgtga tgtcaataac      1800
     gctgccctaa ctctctcgca tatactagga catgtcattg agcgccatgt gcctaaaata      1860
     tgtcatccag ctaagagcaa accatggatg acccgagaac ttcgtatgct caagacagca      1920
     aagaaatctg ctctaaggaa atattccaaa caccacacag tctcgctgca ggaacactac      1980
     agaaaactaa attccgccta caaagtaagc agtcgaaata gtttcagacg ataccagcag      2040
     aatcttcagc gcaacttaaa ggcaaacccg aaattcttct ggaagtatgt gaaagatcag      2100
     cggaaagaag ccggttaccc ttcaaccatg acgttaaacg gcgaagtaac cagtgagcct      2160
     cgacgtattt gtcagttttt tgccgacaag ttctcgagca cttttagtaa cgaatttgtt      2220
     tccgaagaac aaattatcca agccgctagc aatgttccac ttctggcagg tgacagcttt      2280
     ggtacactca acatcgacga cgccatgatt tctagggccg cttcacagct caaatcatcg      2340
     accaataccg gcccagacgg aattccgtct gtttttgtta aaaagtatat cgaaaatctt      2400
     ttagtccctc tccgtcacgt atttaatctg tctatgtcaa gcggagactt cccatccgta      2460
     tggaaaaccg ccgtcatgtt tcctgtttat aagaagggtg agcggaggga tgtgaacaac      2520
     taccgtggag tcacgtctct gggcgcaatt tccaagttgt tcgaactcgt cgttatggac      2580
     ccattgctct cgcattgcaa acagtacctt agcgacgccc agcatgggtt catctccgga      2640
     agatcgaccg cttcgaatct tctttgtctg acgtcacata tcaccgaaag tctagcggaa      2700
     agagcccaaa ccgacgtcat atatactgac ttgtctgcgg cattcgatag agtaaaccac      2760
     gcaataacga ttgccaaact ggaaaggctc ggaatctgtg gcagtgtatt aagatggctt      2820
     cattcatatc tcaccggccg caagctaacc gtaactgttg aagacattat ctcggatgag      2880
     tttttagcca cttccggcat accgcagggt agtcatctag gcccgttgat ttttctgctg      2940
     tattttaacg acgtcaatta cgtactcaaa ggccctcgtt taatctacgc agacgacctg      3000
     aagatctatc gtaggattcg ctccgagtcc gatgcaagaa tccttcagca ggagatcgac      3060
     accttcacga actggtgtac cttgaattgc atgacagtga atccaagcaa gtgctccaca      3120
     attacgtttg ctcggattcg acagccaatt gttttcaact ataaccttcg aggcaacgaa      3180
     attgaacgtg tagaccatgt taaagatctt ggcgtgatcc ttgaccccca gctaactttc      3240
     aagcgacatg tggcttatac agtggaaaag gcctccagaa ccttgggatt tatttttcgt      3300
     atcgccaagg acttcaccaa tatgaattgc ctcaagtcgc tgtactgttc gctcgttcgt      3360
     tcgacgctag agtactgctc tgtcgtttgg aatccgtatt accaaaatgg tacggaaagg      3420
     atcgaatccg ttcagcggcg ttttatacgt tttgctcttc gtcgacttcc atggcgagac      3480
     ccgttccggt taccgagtta tgaaagtagg tgccagttga ttcacatgga aactctccag      3540
     gtgcgccgta acatcgccag agcaatgttt gtaaccgaca cgctacaagg aaggatcgac      3600
     tgttcgacta ttttgaggac gattgatcta aacgttcgtc ccagagcgct acgtaacaac      3660
     tcactgctga gattgcaatt tcgacgcaca aactatggcc agcatagcgc cctaaatgga      3720
     gcgctacgag tcttcaatag agcagcttct tgtttcgatt ttaatttgtc ccgtgctaca      3780
     atccgtcgta acctttctgt attcttttca agaagaatgg acgaataacg atttaatttt      3840
     atttttgtgt tgcgcaccat gacttttgtt aaatttaaga tagtttaatc accattggga      3900
     cacaaatcgt ctgttggtgt aagataataa taaataaata aataataa                   3948
//
ID   CR1-48_AAe  repbase;    DNA;    INV; 4539 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-48_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4539
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1135-1135 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 23 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1657..4476
FT                 /product="CR1-48_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRTKTNEFRTKMETCDYDIIVLTETWLRPDVVNAELA
FT                 SNYCIFRCDRNDNTSTLQRGGGVLIAVKSTLRCSAVELTDYIHLEQVVVAV
FT                 RLPDTTIYVCGIYIRPNSHFDVYDSHASAVQEICNLSSTRDSIVVVGDYNL
FT                 PHLTWHFDDDCNSYLPRNASSESEIMFTQSMIGSGLHQINSLRNMNGRILD
FT                 LAFVSEXSFVELIDPPSSLLKVDSHHKPFVLRIEIETRTRAPVEEADVDDF
FT                 DFKRCDFAALNDMLVAVDWNETFGDAPLDRITVLFYDKVFDIIRHHVPRRR
FT                 RCSAVHSKLPWWTPELRHLRNIVRKARKRYFRNKSHDNRKNLKSLETRYSV
FT                 CQENAFRSYTNRMESNLKRDPKSFWTYIKKLKNINRIPEELSYNGTTAETA
FT                 EASANLFADFFSSVHNNHSPTFSSSARQNIQSFNVSLPMITISQHEVSSAL
FT                 KKLDVSKGAGTDCLPPTFLKECADSLKTPISVIFNRSLREQVFPEIWKVAS
FT                 ITPIHKSGSVHSVENYRGISILCCIAKVFEEIIHRSLYSAVRPIISDVQHG
FT                 FVKKRSTVSNLMSFTNVLSNSVEKRRQVDAIYFDFAKAFDKVPHELVISKL
FT                 KHIGLPDWITEWLRSYLTDRKAHVKVGRARSHSYDISSGVPQGSVLGPLIF
FT                 ILFINDLAVRLKSGKLMYADDLKIYREISSTLDCCALQSDVNELISWCTEN
FT                 GMELNIDKCKTITFTRRQTYVTHDYAIGNNIIERVFSIRDLGVIIDSKLKF
FT                 TEHISTVTAKGFAVLGFIRRNSQSFRDVYTLKALYCSLVRSVMEYAVCVWS
FT                 PYHATHMLRIEKVQRCFIHYCLRQLPWNDPTNLPDYVSRCRLIDLETLTSR
FT                 RTKIQRLFVYDLLSNNIDCSELTNELRFYAPTRQLRERQLLVIRPHRTTYG
FT                 QNCPMSSCLRAFNDVGCYFDFNVSKCTFKHRIKYLN"
XX
SQ   Sequence 4539 BP; 1268 A; 1062 C; 973 G; 1232 T; 4 other;
     aattctggca ccactgcgtg ttttcgtttg tgttgtttat aacgtcgccc taaaatcctg        60
     tgaatattcg tgcaatcaac tctataaatc agggtttatt gctaaactgc ctcgttccgc       120
     ttctgttagc cgcaagcatc aggttttcgc atcacttttg gcaaggtagg acagtgattt       180
     gtgatctaaa tccgagcagg ctagagagtg gaagcatccg ccatcgcccg ataacatatt       240
     tcccacctcg ccgctctcca ccttccaacc gatcgaaagc tgcaacaaga tcaaaaatca       300
     acccgccccc atttgcccca ncgccccacc aacgccctac taytgtttgc tgcaccgaac       360
     gaaatcaaaa caagaaatcg tcctgtaata ctccgcttca tattggaaat aaactactta       420
     cgctgcctcg tctttcattc caacgctccg aaagggacca acgaacgatc atcatacagc       480
     ctcaatcgcc gtccaaagcc aacccgttgc taccaaggat taatcgccaa actctgcatc       540
     cgtagtatca tccattcacg taaggaaatt ctgttttggt tctgcacttt gtttatgtat       600
     tgaactgtga agctcaccgt tgacaagcca ccgtttgtga cagagaacac acgcgcagct       660
     cgtggtcatt ccgagaatca atagttcaca gtatatcacc ccttcgtaac tgggagcttg       720
     tttctcgcag ctaaaatgca gggtgtttgt gaaaaatgcg cttccgaact atccgctgat       780
     ttttggagct gtggtggatt ttgttctggt cgcttttgct tcaggtgtac cggaatgagt       840
     cctgatatcc aagctgccgt tgcgaataac gggtgccttc actggatgtg taacgcctgt       900
     agcggaataa tgattaaagc tcgctttact aaggcaatca catcagtgaa tgctgcctat       960
     gaaggcataa tcgaatcaat gaaaatccga aattcgagac aacattttgt ccgaaatccg      1020
     ctcggaattg cagaataacc ttaaacgaat tccggagatt gttgcaaaca caccgattcg      1080
     aaatattcaa cgtcgcacat ttgattcggc tgtccgtaat cctgcaaaac gtcttcgtgc      1140
     aaatgatgat gtgcctctcg acccgcctaa aaaactggtc tgtggcactg atggccacag      1200
     tactagttct tcagacgtca tcgcagttcc tgaacgaacg gatgaaaaca cgttttggct      1260
     ttacttatca ggagtgtccc cgaaagcgcc tgatgagaag gttatcgaaa tggtcaagaa      1320
     taggctcgma acagacgact taactgtcgt taaacttgtt cctcgtggaa aggatacaaa      1380
     caatctcacg tttgtatcct tcaaaatagg aatgaagctt gatcttaggg caaaagcaat      1440
     gacttcatca acctggccag ttggaattcg ttttcgcgaa ttcgagaacc acagttcctc      1500
     aagggcgggg ttctggaatc cctcggagaa ccagcccgaa ccacagatcg taacagtatt      1560
     gaactagtat ccccatcgtg tcccatagat cttcattctc ctcgtgatga gaccgtttta      1620
     agccatttga caatctacta ccaaaacgtg cggggtatgc gaacgaaaac taatgagttt      1680
     cgtacgaaaa tggaaacttg tgattatgac ataattgttc ttactgaaac ctggctgcgc      1740
     cctgatgtgg ttaacgcaga gttagcatcg aactactgca tctttcgctg tgaccgcaat      1800
     gacaatacca gcacgttaca gcgaggcgga ggcgttttaa tcgctgtgaa atcgactctt      1860
     cgttgcagtg ctgttgagct aacggactac atccacctcg aacaggttgt ggttgctgtt      1920
     agactgcctg atacaacgat ttacgtatgt ggaatttaca ttcggcctaa ttcccatttc      1980
     gatgtatatg attcgcacgc atctgcagta caggagattt gcaacttatc atcaactcgt      2040
     gactccattg tcgtcgttgg cgattacaat ctaccgcatc tgacatggca tttcgatgat      2100
     gattgcaaca gttacttgcc gcgaaatgct tcttcagaat cggaaataat gttcacccaa      2160
     tccatgatcg gttctggact acatcaaatc aactcacttc gtaatatgaa tggacgtatt      2220
     cttgacctag cattcgtgag tgaakctagc ttcgtggagc tcatcgatcc tccatcttct      2280
     ctgttgaaag ttgactctca tcacaagccg tttgttctcc gaatcgaaat tgaaaccaga      2340
     actcgcgccc ctgttgaaga ggctgatgta gacgacttcg attttaagcg ttgtgatttc      2400
     gcagcactga atgacatgct agtggcagtt gactggaatg aaacgtttgg cgatgcacct      2460
     ctcgaccgaa tcactgtatt gttttacgac aaggttttcg acatcattcg ccatcacgta      2520
     ccacggagac ggaggtgctc tgccgtgcat tcgaagcttc catggtggac accagagtta      2580
     cgacacctcc ggaacatcgt tcgcaaagca cgaaagcgtt acttccggaa taaatctcac      2640
     gacaacagaa agaatctcaa gtccctcgaa acgcgataca gtgtatgcca agaaaacgct      2700
     tttcggagct atacaaaccg tatggaatcc aacttaaaac gggacccgaa atctttttgg      2760
     acgtacatca agaagctgaa aaacatcaac cgaattcctg aagaattgtc ttacaacgga      2820
     acgacagccg aaactgcaga agcttccgct aatttatttg cagacttctt cagcagcgtg      2880
     cataacaacc actcccctac gttctcatca tcggcgaggc agaatattca atcttttaac      2940
     gtaagtctac caatgataac gatctctcaa cacgaagtct catctgcgtt gaaaaagctt      3000
     gacgtctcta aaggtgcagg cacagactgc ttacctccga cattcctcaa agagtgtgca      3060
     gactcattga agacaccaat tagtgtaatt ttcaatcgct ctctacgtga acaagttttt      3120
     cctgagattt ggaaagtggc ttcaatcact ccgattcaca agtccggtag tgttcactct      3180
     gtcgaaaatt atcgaggcat ctcaatactg tgctgtatcg caaaggtatt cgaagagatt      3240
     atacacagga gtctctacag cgcagttcgt ccaataatct ccgatgttca gcatggtttc      3300
     gtaaagaaaa gatcgacagt ttcgaatctg atgagtttca caaatgttct gtcgaatagc      3360
     gtcgagaagc ggcgtcaagt ggatgcaatt tatttcgact ttgcgaaagc cttcgataaa      3420
     gttcctcacg aacttgtaat cagcaagctt aagcatattg ggcttcctga ctggataacc      3480
     gaatggctta gatcctacct gaccgatcga aaagctcatg tgaaagtcgg ccgtgcacgt      3540
     tctcattcat atgatatatc atccggtgtt ccgcagggaa gtgttctcgg cccgctaata      3600
     ttcatcttat tcataaacga tctcgccgtc cgtctaaaat ctggaaagct gatgtatgcg      3660
     gatgatctta agatctatag agaaatatct tcgactctcg attgctgtgc attacaatct      3720
     gacgtaaatg agctgatttc atggtgtaca gagaatggta tggaactgaa catagacaag      3780
     tgcaaaacta ttaccttcac gcggcgccaa acgtacgtga ctcacgacta cgcaatcggt      3840
     aacaacatca tcgagcgcgt gttttccatt cgtgatcttg gcgtaataat agatagtaag      3900
     ttgaagttca ctgaacacat aagcaccgtg acggcgaaag gatttgctgt gttgggattt      3960
     atccgacgaa actcgcaatc gtttcgcgat gtgtacacgc tgaaggctct gtattgctcg      4020
     ctggtcagga gcgtcatgga atatgcagtg tgcgtctggt ctccatacca tgcaacgcat      4080
     atgctcagaa ttgagaaggt gcagcgctgt ttcatccact attgtttaag gcagttaccg      4140
     tggaacgatc cgacgaatct tcccgactat gtaagtcgtt gtaggctgat agatttggaa      4200
     acattgacgt ccagacgaac taagattcag cgattatttg tgtatgactt gttgtccaat      4260
     aacatcgact gctcggaact gaccaacgaa ctgaggtttt acgcaccgac aaggcagctc      4320
     cgcgagaggc agttgctggt tatacgaccg catagaacga catatggaca gaactgccca      4380
     atgtctagtt gtttgcgggc attcaatgat gtaggatgtt attttgattt taatgtgtcc      4440
     aaatgtactt ttaaacatag aattaagtat ttaaattaac agtctggcgg attaaggtat      4500
     tgatccaaga cgtagcaatt aaataaataa ataaataaa                             4539
//
ID   CR1-49_AAe  repbase;    DNA;    INV; 5159 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-49_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5159
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1136-1136 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..1357
FT                 /product="CR1-49_AAe_1p"
FT                 /translation="MDCQICSTTLDPGRAVICSGSCGMSFHFTCVEMSKSQ
FT                 YSSWASKIGLMWFCKICRSNFDPVVHDREKVIMKALRELLIRTDSMNTRLG
FT                 NYGENLRRVNKTLSGMLLNSKTPNHTKQTTFRHSIDDLNLDDTLEDTTNCS
FT                 RSCEETSFFEVLDEIDNSIANVPDKFVVGSDKRVQIVASRQKASKSSTNKA
FT                 RIDVSTPAAKRHYFDENVEASTSHGNSNSIEECTTKRHPPAIHGSSSTTNG
FT                 NNSNIYSEPNRTKLKVATNPQATADSESFYXTPFEPNQSEDDVKNYVMDIS
FT                 NLHASLVKVTKLVPRGRRIEDLSFVSFKVTVCQSASAVVGDSWYWPEGISV
FT                 RLFEPNQKNGSAVLLPNTQ"
FT   CDS           1405..5025
FT                 /product="CR1-49_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPKPTLTVEIGQPALIRRPGPVLGSXGGVFQPFLS
FT                 GKYASNKNFTGSDDTTSNSSGESIDSLAQQAQQAFTTGHFYPGRTTLSTME
FT                 ASMPTHTVQTLLPALNRRPGPVLGTGRGVFQPVLSGKYTMCKNFICSDDVP
FT                 SNSFCDDSDRFIQSSGFNRPVQIVAINESDSHPGRTTLGTMEAPKPPITVQ
FT                 TFQPAFLSRPGPVLGVSEGVFQRPLLGKYNLAENDFRSDGSYPHSKLAIPE
FT                 TIKTCRDDHRLLVYYQNVRGLRTKIDNFLLDATESSYDIVVLTETWLDDKI
FT                 YSAQLFGDKYTVFRNDRNQINSAKSRGGGVLIAVSTRLSCSIDPSPICETL
FT                 EQLWIRIKTPGRNIIVGVLYLPPNRKSNCMDIEAHVRSIGLVASTLKSADI
FT                 FLQFGDYNQSGIVWSTHLCNYPLIDAQKSNVNEPCSILLDGFSLHGLTQIN
FT                 TVINRNGKLLDLVLTNEPGLEICSVSEAIEPLIALEPVHPALEVSIKLIKP
FT                 IIFEDIPESPNLDFRRADYEALNDAIAAANWEFLENATDIDDSVEYYTDVV
FT                 KRIIADNVPIGRPPCKPIWSDPHLRKLKSLRAKALRKYSRSRCPSQKRLFN
FT                 YASNRYRLYNRLLYKRYVLRTQDNLRRNPKQFWSFVKTKRKENGLPAEMHL
FT                 ESETASTVLHKCNLFANHFKRTFNTDSASESHVTEALTNTPRDVIDFNMFR
FT                 ISEINVKDAIDKLKFSYSAGSDQIPSCILKKCFNAFVKPLVLLYNASLQQR
FT                 KFPTAWKLSEMFPVYKKGDKTNIENYRGITSLCSTSKVFEIIINDALFASC
FT                 KNYISPDQHGGFFPRRSVSTNLVSFVSDCLRNMDSGNQIDAVYTDLKAAFD
FT                 RVDLAILLGRLEKIGMSAPFVCWFKSYLTNRELYVKIGSEKSMKFSNLSGV
FT                 PQGSNLGPLLFVIFINEIAMILPPGCRVFYADDVKIYMVIKSLIECMELQS
FT                 RLSCFQTWCIRNNLTLSIGKCLVISFHRKLKPIIFDYHLDGHLLQRVEQVR
FT                 DLGVTLDSALTFRTHYNDIISRANKQLGFIFKISDEFRDPTCLRSLFCSLV
FT                 RPILEFSVVVWCPHHANWITRMEAVQKKFVKFALRGLPWLDPLNLPSYEDR
FT                 CRLLGLVTLERRRFNAQAIFVAKILKGEIDSPPILQEINLYAPERRLRQRD
FT                 FLQLGARNAQYGQYDPVRYMCSSFNAVFDLFDFNVSCDSFRFQLCQRR"
XX
SQ   Sequence 5159 BP; 1438 A; 1201 C; 1049 G; 1468 T; 3 other;
     cgttttgact atagtgctgt taacgcgtta tcgagctata tttacggtga tgctatagta        60
     tagctattat tgtttttcgc ccattgacaa gcataaccac gctcacttgc ctttctgaag       120
     agccatctgc cagaaatgtt ttaaaactgg tggagctttc tgtggaactt atttgaaccg       180
     gctgtactac acgctgcata agcgtaggct catcaacgca tctccttcca caaccgtcat       240
     attgcgacac attgagtctc ccacatacac gatggattgc caaatttgct caacaaccct       300
     ggatcctggc agagcagtaa tatgcagcgg atcttgcgga atgtcctttc atttcacatg       360
     tgtggagatg tccaaatccc agtactcgtc atgggcgtct aaaattggac tgatgtggtt       420
     ctgtaaaatc tgccgttcaa attttgatcc ggttgtccat gatcgggaaa aagttatcat       480
     gaaagcctta agggagttat taatccgtac agattctatg aatacccggc ttggtaacta       540
     tggtgaaaat cttcggaggg tcaacaagac cctttctggt atgctcttga actcaaaaac       600
     gccaaatcac acgaagcaga ctacgtttcg tcatagtatt gatgacctta atctagacga       660
     caccctagag gacacaacaa attgttctag atcgtgtgaa gaaacttctt tcttcgaggt       720
     ccttgatgaa atagataact cgattgcaaa tgttccggac aaatttgttg ttggatccga       780
     caaacgtgtc caaatcgttg ctagccgcca gaaagcctcc aaaagttcaa ccaataaggc       840
     acgtatcgat gtttcaacac ctgctgctaa acgacactac tttgatgaaa atgttgaagc       900
     tagcacttct catggcaaca gcaatagtat cgaagaatgc accacaaaac gtcaccctcc       960
     agctatccac ggttccagtt ctaccacaaa tggaaataat tcaaacatct actccgaacc      1020
     caatcgtacc aaattgaaag tagcaactaa tcctcaagca actgctgaca gcgaatcgtt      1080
     ctacktcact ccatttgagc cgaatcaaag tgaagacgat gtgaaaaatt atgttatgga      1140
     catttctaat cttcatgcat ctctcgtaaa agtgaccaag ctagttcctc gcggcaggcg      1200
     tattgaggat ctttcatttg tatcatttaa agtcactgtt tgccaatcag cttcagccgt      1260
     tgttggagac tcttggtatt ggccggaggg aatttctgtg agattgttcg aacccaacca      1320
     aaaaaacgga tctgctgtac ttcttccgaa cacacagtaa aacagtccac tcttctacat      1380
     ccgggacgca cgacgactag ctctatggaa gccccaaagc ccaccctcac agtcgagatc      1440
     ggccagccag cgctcatcag acgtcccggt cctgtgcttg ggtcckgtgg aggggtcttc      1500
     caacccttct tgtcaggcaa gtatgcatca aataagaact ttactggctc tgatgatact      1560
     acttccaaca gctcggggga aagtatcgat tcgcttgcac aacaagccca gcaagctttc      1620
     accaccggcc atttctaccc gggacgcacc accttaagca ctatggaagc ctctatgcct      1680
     acccacacag tccagaccct cctgccagck ctcaacagac gtcccggtcc tgtgttggga      1740
     acaggtagag gggtcttcca gcctgtgcta tcaggcaagt acacaatgtg taagaatttt      1800
     atctgctctg atgatgttcc gtccaacagc ttctgtgatg actccgaccg gtttattcag      1860
     tcatcagggt tcaatcgacc cgttcaaatt gttgcaatca atgaatccga ttctcatccg      1920
     ggacgcacga cacttggcac catggaagcc ccaaagcccc ccatcacagt ccagaccttc      1980
     cagcctgcgt tcctcagtcg tcccggtcct gtgcttgggg tgagtgaagg ggtcttccaa      2040
     cgtccactac taggcaagta caatcttgct gagaacgatt tccgctctga tggatcttat      2100
     ccccacagca aactggctat tcctgaaaca ataaaaacat gtcgagatga tcatcgtctg      2160
     ttggtgtatt accaaaacgt tagaggactc cgtaccaaga tcgacaactt tcttctggac      2220
     gccactgaat cttcgtacga catagtagtt ttgaccgaaa cgtggctgga tgacaaaatt      2280
     tattcagctc agctttttgg cgacaagtac acggtgtttc gaaatgatcg caatcagatt      2340
     aatagtgcaa aatctcgagg aggaggcgtc ttaattgctg tttctacgcg tttatcatgc      2400
     agcattgacc cgtctcctat ctgcgaaaca ctggagcagt tatggattag aattaaaact      2460
     ccaggaagaa acattatagt aggagtactg taccttccac caaaccgaaa gtcaaactgt      2520
     atggacattg aagctcatgt acgatctatt ggtttggttg cttccacatt gaagtctgca      2580
     gacatttttc ttcaatttgg cgactataac caatccggca tcgtgtggtc cacgcactta      2640
     tgcaattatc ccttaatcga tgctcaaaaa tccaacgtaa acgaaccttg ctcaattctt      2700
     ttggatggtt ttagtttaca tggattgaca caaatcaaca ctgtaatcaa tcgcaatgga      2760
     aaactacttg acctggtgct aaccaatgaa ccaggtttag aaatctgttc tgtttctgaa      2820
     gctattgaac cactgattgc actagaacct gttcatcctg ctctagaagt gtcgatcaag      2880
     ttgatcaaac caattatttt cgaagatatt ccggaatcgc ctaacctgga cttccggcga      2940
     gcggattacg aagcgttgaa tgatgcaatt gccgcagcca actgggaatt ccttgagaat      3000
     gctaccgaca ttgatgattc agtggaatac tacaccgacg ttgtgaaacg gataattgct      3060
     gataatgttc ctattggaag acctccctgt aaaccaatat ggtccgaccc tcatttgcgc      3120
     aaattgaaga gtctgagagc aaaggctctt cgaaagtaca gtagatcgcg atgtccttcc      3180
     cagaaacgat tgttcaacta tgctagcaac cgatacaggc tttacaatcg tttgctgtat      3240
     aaacggtatg tattacgcac tcaagataat cttcgccgca acccaaagca gttctggtct      3300
     tttgtaaaaa ccaagaggaa agaaaatggt ctacctgctg aaatgcatct tgaaagtgaa      3360
     accgcttcta cggtgctgca taagtgcaac ttgtttgcca accacttcaa gcgcacattt      3420
     aacaccgatt ccgcatccga atcacatgtc actgaagcac tcaccaacac gccaagagac      3480
     gttatcgatt tcaatatgtt cagaatatct gaaatcaacg tcaaggacgc cattgataag      3540
     ctgaaatttt cctattctgc tggctcggat cagattccat cttgcatcct gaagaaatgt      3600
     tttaatgcat tcgtcaaacc gcttgtatta ctatacaatg cctccttgca gcaacgtaaa      3660
     tttcccacgg cttggaagtt gtcagaaatg ttccctgtct ataaaaaagg ggataaaaca      3720
     aacatcgaga actaccgagg tatcacctca ttatgctcta catcaaaagt ttttgagatt      3780
     attatcaacg acgcgttatt cgccagttgc aaaaactaca tttcaccgga tcaacacggt      3840
     ggttttttcc ccagacgatc tgtctctact aatttggtga gcttcgtttc tgactgccta      3900
     cggaacatgg attccggtaa tcaaattgac gctgtatata ccgacctgaa agctgcattt      3960
     gatcgggtgg atctagccat tttgttaggc agactggaga aaattggaat gtcagcacct      4020
     ttcgtctgct ggtttaaatc ctacctcacg aatcgggaac tttacgtgaa gattggatca      4080
     gaaaaatcga tgaaattcag caacctctca ggcgtccctc aaggtagcaa cctcgggcct      4140
     ctgctctttg ttatttttat caacgaaatt gcgatgatcc ttccgccagg atgtcgggtc      4200
     ttttatgcag atgatgtaaa aatttacatg gtgatcaaat ctctcatcga atgcatggaa      4260
     ctacagagtc ggctgagttg ttttcaaacg tggtgcatac gaaacaacct cacactaagt      4320
     attggtaaat gtctggtgat ttcatttcat cggaagctca aaccaataat cttcgattac      4380
     catcttgatg gccatcttct tcagcgagtg gaacaagttc gagatttggg cgttactcta      4440
     gatagtgctc ttacgtttcg cactcactac aacgacatta tcagtagagc caataaacag      4500
     cttgggttca ttttcaagat ctctgacgaa tttcgcgacc caacttgcct acgctcatta      4560
     ttttgctcac ttgttcgtcc tattttggaa ttcagcgtcg tggtgtggtg ccctcatcat      4620
     gcaaattgga ttacgcgtat ggaagcagta caaaagaagt ttgtgaagtt cgccctccgt      4680
     ggtcttccat ggctcgaccc attgaacctg ccctcatatg aagatcgctg tcgccttctt      4740
     gggctagtca cattggaacg aagacgtttt aatgctcaag caatttttgt cgctaaaata      4800
     ttgaagggtg aaatcgattc tccaccgatt cttcaggaaa tcaatttgta cgcaccagaa      4860
     agaagacttc gacaacgtga ttttcttcag cttggtgcgc gtaatgccca gtacggtcaa      4920
     tatgatcctg ttagatatat gtgctcttct tttaatgcag tatttgatct tttcgatttt      4980
     aatgtgtctt gtgatagttt tagatttcaa ttgtgtcaga ggcgttaaat gttattcaat      5040
     tgttcattaa tgtttgtttt tcatacgtga tttaagtttt gtagtagttt aattagttaa      5100
     ggttttcatt aagaccaatg ttgcgtcaga tgaatgaaag ttgaataaat aaataaata       5159
//
ID   CR1-4B_AG   repbase;    DNA;    INV; 4112 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4B_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4112
RA   Jurka J.;
RT   "A subfamily of CR1-like non-LTR retrotransposons from African
RT   malaria mosquito.";
RL   Repbase Reports 16(7), 1387-1387 (2016).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           13..1092
FT                 /product="CR1-4B_AG_1p"
FT                 /translation="MDCAICSSTIAKDPVLCCGNLPYSKCEAAFHPECIKI
FT                 AAACVKETARNRGLCWMCEKCRESRADFVSFISGLMSDLKNEMRNELFHEL
FT                 DKRFTHLPSSKLPSTKPTNTATSAPKQTGIPTTSLLTVNAYHTDPDNIESS
FT                 TPESVKLDTISRTHPSERTETSITEFSHPALHIGTSNDLTMNSAIQFIPAP
FT                 EPKTWIFITRVAPKVTEESMKTFIQGRLNCTNCSVKRILPNGRDPNALTYI
FT                 SFKVGVPSELKEIALSPTTWPCGFVYREFNFRPRAPKISTPYSGFTLPAPL
FT                 YPQSAVREPAKTNTTHQDMNLANTITSPQPTTSYSISTAVTQTNAASTTEP
FT                 QINIXGNSSGSPFLRKQ"
FT   CDS           1851..3788
FT                 /product="CR1-4B_AG_2p"
FT                 /translation="MVPQQNLSSSESPERRDLNFRRTKFDELTIALTQTNW
FT                 ELLKSNHDINDSVLSFTNHLNGLFEQFVPCFNPPSKPPWANNALRVAKRRR
FT                 SNAQQKLRSLRNSTNQANFARAARIYKQLNRFAYADYVRKIEFRFKKDPLA
FT                 FWKFIRNKKSCDRLPAVMNFKGNIISGEDDLCKGFAEHFASVYTCNSSKPL
FT                 NLSSALSAINDAVDLSTSTISEDEVDAAISQLKLSYASGPDNIPSAILIHC
FT                 KAALLPILTQLFNKSLQSKCFPQIWKSSYMFPVFKKGDKSDICNYRGISML
FT                 CACSKLFEKVMFRHMSYAFLPVISVMQHGFMPKRSIETNLLHLLQFCYSNI
FT                 DKGLQVDVIYTDFCAAFDKVNHYLLLAKLLKYGVHSNFLAWLESYLMNRCI
FT                 NVKIGKTFSDPFCNFSGVPQGSILGPLLFIIFINDIVFAVPNVNVLLYADD
FT                 LKMFLAVENSNHCEILQDSVNRFLTWCHDNEMFVNVQKCNCITFSKKRIPI
FT                 TFNYKIGQDSVPRSSVVRDLGIMLDSKLILSCHFHTIVSKALNMLGFILRA
FT                 SSDFKDPFCLKSLYCALVRPILEFACVVWCPNQVTYIDMIEKVQKKATRAM
FT                 FYRLPWSNQMPRPPYHVRCQLFGLETLEHRRKNAQCIFMHKLLNGLID"
XX
SQ   Sequence 4112 BP; 1204 A; 954 C; 708 G; 1243 T; 3 other;
     tctctcatcg caatggattg tgccatctgc tcttctacca tcgccaagga tccngttctc        60
     tgctgtggaa atttgcctta ttcgaaatgc gaggctgcgt ttcatccaga atgcattaaa       120
     attgctgcag cttgtgtcaa agagacggcc cgtaatcgtg gcctttgctg gatgtgtgaa       180
     aagtgtcgtg aatctagagc cgacttcgtt tcttttattt ctggtttgat gagcgatctg       240
     aaaaatgaga tgagaaatga actgtttcac gagctagata aaaggttcac tcacttgcct       300
     tcatccaaat taccatccac taaacctaca aatacagcta caagtgcacc aaagcaaact       360
     ggtatcccca ctacaagttt attaaccgtt aacgcatacc acactgatcc tgacaatata       420
     gagtcatcca cgcctgaatc cgttaaacta gacactattt cacgcacaca cccatcagag       480
     cgtaccgaaa cgtcgatcac cgaattctct cacccagctc ttcacattgg cacttctaac       540
     gacttaacca tgaacagcgc tatacagttt ataccagcac cagaaccaaa aacatggatt       600
     tttattacga gagttgcacc aaaagttacc gaagaaagca tgaaaacatt tattcaaggg       660
     agattgaatt gcactaactg ttccgtgaaa cgtattttgc ccaacggccg cgatccaaac       720
     gctctcacat acatatcatt taaagttggt gtcccttctg aactaaaaga gatcgcgctc       780
     tctcccacga cttggccgtg tggttttgtt tacagagagt ttaactttcg cccacgcgct       840
     cccaaaatat ccacaccata ttcgggattc accttacctg caccgcttta tcctcaatca       900
     gctgttcggg aacctgcgaa aacaaacact actcaccagg acatgaatct cgccaacact       960
     atcacatcac cacagccgac tacttcttac tcgatctcta ccgcggttac acaaacaaac      1020
     gctgcatcaa caacagaacc gcaaataaat attgntggca actcttccgg atcacctttt      1080
     ttacgcaaac aataacgtgt ccgcgccgac acgatgtntc actaaaggat cctttctata      1140
     tcttctatca aaatgctaga ggtttacgca caaaaaatac cgaatgcttt accagtacag      1200
     ctatttccga gtgggatgtg atcgttctca ccgaaacctg gctcaccgat agttacccat      1260
     cttctctatt gtttgacagc caccgctaca ataccttccg attggatcgc tctgccataa      1320
     atagtgataa atgtattggt ggaggagttc tcattgccac gaatatcaaa tatgcggctt      1380
     cgctgtgcac tactaataca tcatcaattg agtgtctttg ggtgcgtgta aaagttttgg      1440
     atgtttccct agtcatcggc tcattctacc tccctcctga ccaagctgcc aaccccgatg      1500
     ttataaatac tttctgtact acgctacatg aaactaggga aaaatataaa gacgatcatt      1560
     tgattattct cggagatttc aatcaaccct atcttaaatg gattactcgg aacgattttc      1620
     cttcgcttga cttcagcaac tcccgaatac atcctacctg ccaaattctc ctcgatgaaa      1680
     ttaatttggc cggccttcag caagttaatt caatcaccaa ctgtaacaat actatacttg      1740
     atttaatttt tgcggatgac cagaccgttg aacgattgag cccattagaa ctgagtttag      1800
     aatccatagt tgaacctgat ccacatcacc ctgctctact taccagcttc atggttccgc      1860
     aacagaattt gtcgtcttct gagtccccag aacggagaga tttgaacttt agacgtacga      1920
     aatttgatga attaacaata gcgctaactc aaaccaattg ggaattatta aagtctaacc      1980
     acgatatcaa cgatagcgtg ttaagcttca caaatcatct aaatggatta ttcgaacagt      2040
     ttgttccctg ctttaatcct ccatcgaaac caccgtgggc taataatgca ctacgcgtcg      2100
     ccaaacgccg gagatctaat gcccaacaaa aactgcgcag tcttcgaaac agcaccaacc      2160
     aagcaaactt tgctcgcgct gctcggattt acaaacagtt aaaccgtttt gcgtatgctg      2220
     actacgttag aaagatcgaa ttcagattca aaaaggatcc actagcattc tggaaattca      2280
     tacgaaataa gaaatcctgc gaccgtcttc cagctgtaat gaacttcaag ggaaacatca      2340
     tttcgggtga agatgacctc tgcaaaggtt ttgcagaaca tttcgcttcc gtgtacacct      2400
     gcaattcttc gaaacctctc aacctatctt cagcactttc cgcaatcaac gacgcagttg      2460
     acttatccac atctactatc agtgaagatg aagtcgatgc tgccatatcg caactgaagc      2520
     tttcgtatgc ctctgggccg gacaacattc ccagtgcaat tcttattcac tgtaaggctg      2580
     ctcttttgcc tattctgact caacttttca acaaatcctt acagtcgaaa tgcttcccgc      2640
     aaatatggaa atcttcttac atgtttcctg tctttaaaaa aggagacaaa tctgatatat      2700
     gtaattatcg cggaatctct atgttatgtg cttgtagtaa gctgtttgaa aaagttatgt      2760
     tccgccacat gtcctacgct ttcctgcctg ttatatctgt tatgcaacac ggcttcatgc      2820
     ctaaacgttc gattgaaact aacctgcttc atttgcttca attttgctac tccaatattg      2880
     acaagggcct ccaggttgat gtcatttata ccgacttctg cgctgcattt gacaaggtca      2940
     accactactt attgcttgct aaattattaa aatatggtgt acactcaaat tttttagcat      3000
     ggttagaaag ctacctaatg aaccgttgca ttaatgtaaa aattggaaaa actttttctg      3060
     accctttctg taacttttct ggtgttccac aaggaagcat attagggcca ttattattta      3120
     ttatatttat taacgatatt gtgtttgctg ttcccaacgt caatgtttta ctatatgcag      3180
     acgatcttaa gatgttcctt gctgttgaaa attcaaatca ctgcgaaata cttcaagatt      3240
     ccgtaaaccg ttttttgacg tggtgccatg ataacgaaat gtttgtgaat gtacaaaaat      3300
     gtaactgcat tactttctct aagaaaagga ttccaataac ttttaattac aaaataggtc      3360
     aagacagtgt gccgcggtca tctgtagttc gtgatttagg aataatgtta gacagtaaac      3420
     ttatattatc gtgccatttc cacacaatcg tctcaaaagc attaaatatg ttaggtttta      3480
     ttctacgtgc ttcttccgac tttaaagatc ctttctgtct taaatcgtta tactgtgccc      3540
     tagtccgtcc tatactagaa tttgcttgcg ttgtttggtg tccaaaccaa gtgacctata      3600
     tagacatgat agaaaaagtt cagaaaaagg cgacacgcgc tatgttttat cgtcttcctt      3660
     ggtcaaacca aatgccacgc cccccgtacc atgtcaggtg tcagttattt ggtctcgaaa      3720
     ctttagaaca caggagaaag aatgctcaat gtattttcat gcataaatta ttaaatgggc      3780
     ttattgatta aatgggctta ttgatgcacc tgaaatttta aatctgatca gtttttctgc      3840
     acctactagg gatcttagaa gcaggtcttt aatcaggatc ccatttcgat cttcttcatt      3900
     tggcgctaac gaccctttaa ttaaaatgtg tgtcagctac aatagacttg aatcatctgc      3960
     agattttcat atccctgttt ctcaccttcg tcagttgtaa agggctagtg ttatttatgt      4020
     ttaagttgtt tactaattaa gaatttgtat ctgttattta ggcctattgc ccgataacgt      4080
     aaataaataa ataaataaat aaataataat aa                                    4112
//
ID   CR1-4B_LMi  repbase;    DNA;    INV; 1831 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1831
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3102-3102 (2014).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 1831 BP; 548 A; 364 C; 403 G; 516 T; 0 other;
     aggcaaaagt tagtagagat tcgtgcgtct ataaaaagat cgatgcgtga agcatacaat        60
     aattatcaca gccatacctt agcaaaagat ctttccgaga acccgaaaaa attctggtcc       120
     tatgtaaaat cgataagcgg gtcaaagccc actgtccagt cactagttga tcattccggg       180
     gcagtaatag aagaaagcaa acggaaagct gaagttctaa atttaacctt taagaaatct       240
     ttcacgcagg aggaccgcac aaatatacca tcatttgatc aacgtactaa ttccgaaatg       300
     ggggacatag caataggtat ttccggtgta agaagcagct gagagagtta tacgacccta       360
     cttacattta tagaaaggaa agagggggga ttcgaacccc cgaccgtagt ggccgtgcag       420
     accgtgactg gagcgcctca gccccctcgg ccaccgcggc cggccattca ggacgccgcc       480
     gtttccgttc cccgctagga catcctgatt ttggtctctt gcgatttcct taaaccgaac       540
     cagccaattt ctgggaatgc aatgccagtt tccttttcca cccttgaaca aacgacccga       600
     aattgtgttc tgtctctact gacgttgagt cctaatcttc ttcctcagat gctgatttca       660
     ttttcgccag tagctagaag taacttgttg tatcctgaaa gtgatgtgat gagaagttat       720
     ttgtctggtc ccactgggtt ggccgcgagg tctgaggcgc catgtcacga attgcgaggc       780
     tactcccacc ggagggttga gtcctccctc gggtatgggt atgtgtcttg tccttagcgt       840
     aagttagttt acgtagtgtg taagtctagg ggtcgataat cttagtagtt tggtccatta       900
     gttacacaaa cgatcaataa tttgtctgat tagcagtcga aacaggctcc tcacgttgtt       960
     tctgacaaca ctagaaaaga tgttaaaaat caaaaatatt tttcacctag gtaatgctta      1020
     gaatggcacg atgtatacga aacctgacaa gcagctttcg tagagacctt gatgaggcta      1080
     gaaacttggg gaaacaacca catggtggga ttaaatcgtc ctgaatgggt tagatcttcc      1140
     aaaatgagag atacgagttc agcacctggt atgtatcatt aacgtatatg tgctgtattt      1200
     cagtctcacc agacacggta tttttgctgc tatcgatctc gtatccctta cacagcaagt      1260
     cgaaatgcct tttcaagtac aaacgtgatc aaaactaggt gttttgaaat cttttatata      1320
     gtaaatgttg ttttaaagta gataacgagg gtgatacgta agtttcagcc tgcacatcaa      1380
     aagtacacaa ttgatgttaa gcttccatat agtagacgac gctgctaatc gcagttttct      1440
     gactgcttag ttcagtaatt cattaaaacc actcagaaag cgaaagaaat aatttgaaaa      1500
     cattttggag agcaagaatg attcgaatta tcatagaact taggaactat agctattcct      1560
     gcaaaatatc tatattcaca aaaaaagaat tagttttgat tatcgattac tgaatgaatt      1620
     atttgatata ttacgtgata tatttcgcgt taagatcaca aagacaagat aagagaaatt      1680
     agggctcgta cggaggcata taggcattct ttttttcctc gttcaatttg ggagtggaat      1740
     aggaaaggaa atgcctagta gtggtacagt gtaccctccg ccacgcacct tacggtgaat      1800
     tgcggagtat gtatgtagat gtagatgtag a                                     1831
//
ID   CR1-4_AG    repbase;    DNA;    INV; 4411 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   CR1-4_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; CR1 clade; CR1-4_AG; DNA/RNA-binding; PHD finger;
KW   reverse transcriptase.
XX
NM   CR1-4_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4411
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-4_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 15-15 (2003).
XX
DR   [1] (Consensus)
XX
CC   CR1-4_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-4_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~1% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-4_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-4_AG is composed of the TAAA
CC   microsatellite.
CC   CR1-4_AG encodes two proteins: a 349-aa CR1-4_AG-ORF1p
CC   (positions 363-1409) and 965-aa CR1-4_AG-ORF2p (positions
CC   1430-4324). CR1-4_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-40). CR1-4_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           1430..4324
FT                 /product="CR1-4_AG-ORF2p"
FT                 /translation="MEPVLNTFNIFYQNVRGLRTKTSECFANTAIADWDVI
FT                 VLTETWLDDSFPSELLFDNNRFNTFRTDRSAANSNKCRGGGVLVAINANYA
FT                 SSLCSTNTSTIECLWVRVKVLNVSLIIGSFYLPPDQSANMDTINAFCNSLH
FT                 LTREKYKNDFFILFGDFNQPNLKWDINGKFPTLNLMLTRLSPTSQALLDEL
FT                 SFEGLRQLNTVLNHNNNMLDLVFANDKVTDYMRPIELCIESIVEPDGHHPA
FT                 LLTYFTLPQYSVPSSKPPRQADFNFRRTNFTDLVSALNQINWDSIADHDDI
FT                 NDSVAEFSSQMNELYEQFIPRFNVRAHPPWTNSALRLAKRRRSRALKKLHR
FT                 LKNSTNQINFARASKIYKQLNRTAYANYVRKIEINIKRHPTSFWKFAKDKE
FT                 SCGRLPSSMQFEGNTITGDEEFCNAFASYFSSVYTNNSSVPSNSTSALSFI
FT                 NDEVNLCTPLINDDEVESAISLLKLSYAPGPDNIPSAILINCKAALIPILT
FT                 KLFNKSLQSKCFPRLWKSSWMFPVYKKSDKSNVCNYRGISMLCACSKLFEK
FT                 IMSRHMLQAFSPLISNVQHGFMPKRSIETNLIYLLNFCHSYIDKGLQVDVI
FT                 YTDFCAAFDKVNHFLLLSKLSKYGVHTNVVEWLRSYLTDRCINVKIGTSLS
FT                 ATFHNLSGVPQGSILGPLLFIIFINDVVFAIPHVKLLLYADDLKMFLPVKY
FT                 SDDCEMLQDSLNYFSAWCFNNEMLLNVSKCSCITFSKKKNPIIYNYKINED
FT                 SVPRFSQVRDLGVILDSKLSLSSHYQTIVTKALKLLGFVLRVSADFKDPFS
FT                 LKTLYCSLVRPILEFASVVWCPHQITYIDKIEKIQKKITRVMFHRLPWSNQ
FT                 IPRPSYNVRCLLFGLETLQHRRTTAQITFMHKLLIGDFDAPDILNFICFST
FT                 PSRGLRSRELLRSPFRSTGFGANDPLLKMIDVYNRLGLSADFNQSVSQLRQ
FT                 HIQVSSRAII"
FT   CDS           363..1409
FT                 /product="CR1-4_AG-ORF1p"
FT                 /translation="MDCAICSTTINKDPVVCIGNLPFSECNSAFHPECIKL
FT                 AATCVKEVARNRGLCWMCEKCRDSRSDLFSSISCLMNTLKDELKNAIRSEL
FT                 DQRISQLDPNRVMPQEREKIAPTVSTISLTDKTFHTSTDTPMSPTPTPVKQ
FT                 NSLPHSQSRMLSDNEHINPTQAILHTGTANDHINTDTIQFIPAPEPKVWMF
FT                 VTRIAPTVTEENMKMFILGRLKCTDCSVKCVIPRGRVTSSLKYVSFKIGIP
FT                 SEFGELAFSPSTWPCGFVYRQFEFHQRTQKQFTPTLPVSCFPASNNSTARS
FT                 FSTTNFMHNDVNCINVIPPTHTTQHSPSPSHHLKNANSPETHLTQNNSSGS
FT                 TFLSQH"
XX
SQ   Sequence 4411 BP; 1287 A; 967 C; 779 G; 1377 T; 1 other;
     cggggagaga gttggccact gaagcgtttg gacgtgtttc tgcgttgctc ctgtgtactg        60
     tctgtttttg gtgtgatttt ggtttgaaat cgttcgtttt tgagtttgtg aagctgttcc       120
     tgtcgcaagt tttgctgtgt tgctgtgttg aagcattttg ttcctgcatc gtacgagaat       180
     ttctacgaga acgcgtgcct gaatttgtat tttctgcgtg atttgtgttt catcggcgac       240
     agcggttcag tgttattgac cctgcttaat acactcagag agtaattcgc accagctcat       300
     caataagtgt cctctccgtt cactctcact gctcacctaa gtgatcgata ctctctctca       360
     taatggactg tgcaatctgc tctactacta tcaacaaaga tccggttgtt tgtattggca       420
     atcttccttt ttcggagtgc aattctgcct ttcatccgga atgcattaaa cttgccgcca       480
     cttgtgttaa ggaggtggca cgcaatcgtg gtctctgctg gatgtgcgag aaatgccgtg       540
     actcgagatc agatttattc tcatcaattt cgtgcttgat gaatacactg aaagatgagt       600
     tgaaaaatgc aatacggagt gagcttgatc aaaggatatc tcagctggat ccaaatagag       660
     tgatgccgca agagcgtgag aaaatcgctc cgactgtgag taccatctct ctcaccgata       720
     aaacattcca cacatccacc gatactccta tgtcaccaac accaactccc gtcaaacaga       780
     actcactacc acactctcaa tcgcgtatgc tctctgataa tgaacacata aatccaacac       840
     aagcaattct tcacaccggc actgccaatg atcacatcaa cacagacacc atacaattca       900
     ttcctgcacc tgagccaaaa gtttggatgt ttgtaactag gattgcaccc actgtaactg       960
     aggagaacat gaaaatgttc attctaggaa ggttaaaatg cactgactgt tcggtgaagt      1020
     gtgtcatacc aagaggtcgc gttacaagct cactaaagta tgtgtccttt aagatcggca      1080
     ttccatcgga gtttggcgag ctcgctttct ctccttcaac ttggccatgc ggatttgttt      1140
     accgccagtt tgaatttcac caacgtacac agaaacaatt cacaccaaca ctcccggtat      1200
     cttgctttcc tgcttcaaac aattcaactg ccagaagttt ctcaactact aattttatgc      1260
     ataatgatgt caactgcata aatgtgatcc caccaacaca cacaacacaa catagtccat      1320
     caccgagcca tcatcttaaa aatgcaaact cacctgaaac tcacctgact caaaayaatt      1380
     cctccggttc gactttttta agccaacatt aagtcattca actgtaccta tggagccagt      1440
     actaaacaca ttcaatatat tttatcaaaa cgtgagaggc ttacgtacta aaacctctga      1500
     atgttttgct aatactgcaa tcgccgactg ggatgttatc gttcttacgg aaacgtggct      1560
     agatgacagc tttccatctg agcttttgtt tgataacaac cgctttaata cattccgtac      1620
     ggatcgttct gcagcaaaca gtaacaaatg tagaggtggt ggtgtcctcg ttgcgatcaa      1680
     tgcaaattat gcttcctctc tgtgctcgac aaacacatct acaattgaat gcctttgggt      1740
     tcgagtaaaa gttcttaatg tttcgctaat catcggatca ttttatttgc ctcctgatca      1800
     atcagccaac atggacacca taaatgcatt ctgtaattca ttgcacttaa cgagagagaa      1860
     atataagaat gactttttta ttctgttcgg ggacttcaat caacctaatc ttaagtggga      1920
     tatcaacggc aaatttccga cactgaatct tatgcttacc cgactatccc ctaccagtca      1980
     agctctactc gatgaactaa gctttgaagg tcttcgccaa cttaacactg ttctaaacca      2040
     caataacaac atgttagatc tagtgtttgc gaacgacaaa gttactgatt acatgaggcc      2100
     aatcgaatta tgcatcgaaa gtattgttga acctgatgga catcatccag ctttacttac      2160
     atacttcacg ctcccgcaat acagtgtgcc gtcatctaaa cccccacgtc aagcagattt      2220
     caattttaga cgaactaatt tcactgatct cgtttctgca cttaaccaaa tcaactggga      2280
     ctctatcgct gaccatgacg acatcaacga cagtgtggct gaattttctt ctcaaatgaa      2340
     tgaactgtat gaacaattca tcccacggtt taatgttcgt gctcatccac catggaccaa      2400
     ttctgcacta cgtttggcta aacgtcgaag atcacgggcc cttaaaaaac tgcatcgact      2460
     aaaaaacagc actaatcaaa taaattttgc tcgcgcctca aaaatatata agcagctgaa      2520
     ccgaaccgcc tacgccaact acgtcaggaa aattgaaatc aatatcaaaa gacatcccac      2580
     atcattctgg aaatttgcta aagataagga atcctgtgga cgacttcctt cctcgatgca      2640
     gtttgaggga aacaccatta ccggagatga agagttttgc aatgcatttg cctcatattt      2700
     ctcttctgtg tacaccaaca attcctcggt accgtctaac tcaacatcgg ctttatcctt      2760
     cataaatgat gaggttaatt tatgcacacc actaatcaac gatgatgagg tggaatctgc      2820
     tatttcgttg ttgaagcttt cctacgcacc tgggcctgac aatattccca gcgcaattct      2880
     cattaactgc aaggctgctc tcattcccat actgaccaaa ctattcaaca aatccttgca      2940
     atcgaaatgc ttcccgcgtc tttggaaatc atcgtggatg tttcctgttt ataaaaaatc      3000
     tgacaaaagt aatgtgtgca attatagagg aatttcaatg ttatgtgcgt gcagtaaact      3060
     gtttgaaaag ataatgtctc gtcatatgct ccaagccttt tcaccattaa tttctaatgt      3120
     tcaacatggc tttatgccga aacgatcgat tgagaccaat ctaatatact tacttaactt      3180
     ttgccactcc tatattgaca agggcttaca ggttgacgtc atttatactg acttctgcgc      3240
     tgcttttgac aaggtcaacc actttctatt gctatctaaa ttatcaaagt atggtgttca      3300
     cacaaatgtt gttgagtggt taagaagtta tttaactgat cgttgcatta acgttaagat      3360
     aggaactagt ttatctgcca cattccataa tttatctggt gttcctcaag ggagtatatt      3420
     aggaccttta ctatttatta tatttattaa cgatgtcgtg tttgctattc ctcatgttaa      3480
     attgttatta tatgctgacg atctaaaaat gttcctacct gttaaatatt ctgacgactg      3540
     tgaaatgtta caagactcgt taaactattt ttctgcatgg tgttttaata atgaaatgtt      3600
     acttaatgtt agcaaatgta gttgtataac attctcaaag aaaaaaaatc ctattattta      3660
     taactacaaa atcaatgaag acagcgttcc acgtttttct caggttcggg acttaggagt      3720
     tattttagac agtaagctta gtttatctag ccattatcaa actatcgtca ctaaagctct      3780
     taaactgtta ggatttgtct tacgtgtctc ggccgacttt aaagatcctt tcagtttaaa      3840
     aacattatac tgttctttag tccgtcccat cctggaattt gccagtgtag tttggtgtcc      3900
     ccatcaaatc acatacatag ataaaattga aaaaattcag aaaaaaatca cacgtgttat      3960
     gtttcatcgt cttccctggt caaaccaaat tccacgtcct tcgtataatg ttcggtgttt      4020
     actatttggc ttagagactt tacagcatag gagaactacg gctcagataa cttttatgca      4080
     taaattatta attggagatt ttgatgcacc tgacatttta aattttattt gcttttctac      4140
     tccctctaga ggtcttagaa gtagagagct actaagaagc ccttttagat cgactggttt      4200
     tggtgccaat gatccactgc tcaaaatgat tgatgtgtat aataggttag ggttatcagc      4260
     agatttcaat caatccgtta gtcagctgcg tcagcatatt caagttagtt ctagggccat      4320
     aatttaaact tgtactctgt aagcattaag ttatttaggc atactgcccg ataactttga      4380
     tttaaataaa taaataaata aataaataaa t                                     4411
//
ID   CR1-4_CQ    repbase;    DNA;    INV; 3697 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3697
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 4-4 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..3658
FT                 /product="CR1-4_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRASRLPDATTSSPSYRTXSPASRSHQSRPGVGVGVG
FT                 GGVSQTAPPGKYYFRTQPSPPDACPTYSSRATEPATRNVYASPXSARAIQS
FT                 SPGRTVESLMRASRLPDATTSSPSYRTRSPASRSHQSRPGAGVGVGGGVSQ
FT                 SAPPGKYHPSFPHCTSDGPSPSSKLRIYYQNVRGLRTKVDAFFLAITECDY
FT                 DVIVLTETWLAAEILSPQLFGSNYRVFRNDRNERNSVKRSGGGVLIAVASR
FT                 LDCVSDPTPVCDTLEQLWVRLSVGASQRVCIGVFYFPPGMNRNIDLIKSHL
FT                 DSIGSVISSLDLNDSFIQFGDYNQPGLKWIPSEEGGLEIDPVLSSMPLASS
FT                 YLIDGFNLHGLTQLNSCINVYNNCLDLVLVNDVVLPKCAVFEAVEPLVPLD
FT                 ITHPALEMVVDVPAPTVTTEPPSAIQQPFNFRKANYAAIKEELSYVDWSFL
FT                 ETSSSIDAAVDSFQTVLNNIFAVHVPRRRPSQKPPWSNATLRRLKQLKAAA
FT                 LQDFCNHRSPFFQTRFKLASKRYRGCNRTLYRRYVIRTQHDLRKNPKNFWS
FT                 FVNSKRKTDGLPPTLYLNDVAATTPEEKCALFAAHFKDAFNSRPASEAEIM
FT                 AATRNTPANAFECSFTEVGNGQVTAAIDKLKLSYSAGPDGIPSSVIKRCSD
FT                 VLLLPLSILFNLSLCQSTFPAKWKRSFMFPVHKKGAKSSIKNYRGITSLSA
FT                 CSKVFEILINSVLFESCKHYISTDQHGFIPKRSVATNLAQFVSHCLQEMDA
FT                 GAQVDAVYTDLKAAFDRVDHGVLLKRLEVLGVSANLIRWLKSYLTDRVMRV
FT                 RIGNSESDIFTSLSGVPQGSNLGPLLFILFVNELALLLAGGCRLFYADDVK
FT                 IFTVVRSVLDCSTLQRQLDRFNEWCLRNFLTISIDKCNAISFHRKLKPVIF
FT                 DYAIAGSTLARVTQVRDLGVTLDCKLSFTSHRHDIVSRANRQLGFIFRIAE
FT                 DFRDVACLRSLYCALVRSILEFCSVVWCPYQSTWTAKIESVQRKFTRLALR
FT                 RAHNPAGWSPYEERCRILRLDTLEKRRHISQASFVAKVLAGEIDSPWILAQ
FT                 IQVYAPERPLRQRPYLQLARRNTNYGQHEPIRFMCSRFNVFSQLYRPNIST
FT                 SMFQQRARLWYSSQF"
XX
SQ   Sequence 3697 BP; 858 A; 1075 C; 842 G; 917 T; 5 other;
     gctccggtga atttttttgg gagccawcaa acgccgccac gcagactcag caaaacctgc        60
     caccgccccc tctccaacct tctccaacaa aatcgtcgat gccggaaacc accccaaagt       120
     caacgccgaa gccaacgcca aagtcaacgc cgaaatcttc actggaaacg gagcctactt       180
     tgccgtcggg ctcacccatg gaccacgaga actaacgccc acgcttacaa aatcgccttc       240
     ggttcattat ctaccagctt cwtcgccagg acgcmccgta gaaagcctta tgagagcctc       300
     tcgcctgccc gacgccacca catcctcgcc aagctaccgc acgagwagcc cagctagtcg       360
     cagccaccag agccgtcctg gtgttggtgt cggtgtcggg ggaggggtct ctcaaacggc       420
     gccccctggc aagtactatt ttcgaacgca accttctcca cctgatgcct gcccaactta       480
     cagctcgcgt gccacagagc ccgcgacccg gaatgtctac gcttcaccgm tgtcagctcg       540
     cgcgatccag tcttcgccag gacgcaccgt agaaagcctt atgagagcct ctcgcctgcc       600
     cgacgccacc acatcctcgc caagctaccg cacgagaagc ccagctagtc gcagccacca       660
     gagccgtcct ggtgctggtg tcggtgtcgg gggaggggtc tctcaatcgg caccccctgg       720
     caagtaccat ccaagctttc cccactgcac atctgatggc ccctcgcctt ccagcaaact       780
     gcgtatctac taccagaatg ttcgaggtct ccgaacgaaa gtcgatgcct ttttcctcgc       840
     catcactgag tgcgattatg acgtcattgt cctgactgaa acttggctgg ccgccgagat       900
     tctgtcccct cagctgttcg gttcgaatta ccgtgtattc aggaacgaca gaaatgagcg       960
     gaacagtgtt aagcggagcg gaggaggtgt tctgatagct gttgcatctc gtctggactg      1020
     tgtctcagac cctactcctg tctgcgacac tttggagcaa ctctgggtta ggttatccgt      1080
     aggcgcttca caacgcgttt gcataggcgt gttctatttt cccccgggaa tgaatcgcaa      1140
     cattgaccta attaagtccc acttagactc aattggcagt gtcatttcca gccttgatct      1200
     gaacgattcg ttcattcaat tcggcgacta caatcaacct ggcctaaaat ggattccctc      1260
     ggaagaaggt ggacttgaga tcgacccggt gctgtccagt atgccacttg ccagcagtta      1320
     cctaatcgat ggttttaacc tgcacgggct tactcagctc aactcctgta tcaacgtcta      1380
     caacaactgt ctcgaccttg tcctggtgaa cgacgttgtg cttcccaaat gcgctgtctt      1440
     tgaagctgtt gaaccgctgg taccactcga catcacccat cctgcactgg aaatggtcgt      1500
     cgatgttccc gcacctacag ttacaaccga accaccatcc gcaatccagc aacccttcaa      1560
     cttccggaaa gccaactatg cagcgatcaa agaggagctg agctatgtcg actggagttt      1620
     tttggagact tcttcgagca tcgatgccgc cgttgattct tttcaaactg ttttgaacaa      1680
     catttttgct gtacacgttc cccggcgaag gccttctcag aagccacctt ggtctaacgc      1740
     cactttacga agactcaagc agctcaaagc cgcggctctc caagatttct gcaatcatcg      1800
     ttcacccttc ttccagacca gattcaagct cgctagcaaa cgttacagag ggtgcaaccg      1860
     tactctgtac aggcgatatg ttattaggac gcagcacgat ctccggaaaa atccgaaaaa      1920
     tttctggtcg tttgtaaact cgaaaagaaa aacggacggc ctgccaccta cgttgtacct      1980
     gaacgatgtt gctgctacta ctcccgagga aaaatgcgcg ctttttgcag cccactttaa      2040
     ggacgcgttc aactctagac ctgcttcgga ggcggaaatc atggcggcaa cacggaatac      2100
     tccagccaac gcattcgaat gttcctttac ggaggttggg aatggccaag ttactgccgc      2160
     tattgacaaa ctcaaactgt cctactcggc cggccccgac ggcattcctt cctctgtcat      2220
     caaacgttgt tcagatgttc tcctattgcc tctttctatc ctcttcaacc tttctttatg      2280
     tcaaagtacc ttcccggcta agtggaaacg ctcttttatg tttccagtcc acaaaaaggg      2340
     tgccaaaagt agcatcaaga actatcgtgg aatcacctcc ctctcggcct gctccaaggt      2400
     ttttgaaatc ctcataaaca gtgtcctgtt tgagagctgt aaacactaca tctccacaga      2460
     ccagcatgga tttattccga aacgttcggt tgccacgaat ctggcccaat tcgtgtctca      2520
     ttgccttcag gaaatggatg ccggagcgca agtcgacgct gtgtatacag acctcaaggc      2580
     tgctttcgat cgagtcgacc acggagttct tctgaaacga ctggaagtac ttggagtttc      2640
     tgctaatctc attcgctggt tgaagtccta cctcactgac cgggttatgc gtgtcaggat      2700
     tgggaactct gaatcggaca tattcaccag tctgtctggc gttccccaag gcagtaactt      2760
     agggccccta ctgtttatcc tgttcgtcaa tgaattggca ctgctgctag ccggaggatg      2820
     tcggctgttc tacgcagatg acgtgaaaat attcacagtt gtaaggagcg ttttggactg      2880
     ttcaactctg cagagacagc tggatcgttt caacgagtgg tgcttgcgta acttcctgac      2940
     gatcagcatt gacaaatgca acgccatctc tttccatcga aaactgaagc ctgtgatctt      3000
     tgactacgcc atcgcgggaa gcacactggc gcgggtgacc caagtacgag atcttggagt      3060
     tactctggac tgcaaactca gtttcaccag ccatcgccat gacatcgtgt ccagagccaa      3120
     ccgtcagctg ggattcatct tcaggatcgc tgaggacttc cgggatgttg catgtctgcg      3180
     ctccctgtac tgcgcgctgg taagatccat cctcgagttc tgctctgttg tctggtgtcc      3240
     ataccaaagc acttggacag ccaagatcga atcagtccaa agaaaattta ctcgacttgc      3300
     ccttcgccgt gcgcacaatc ctgctggttg gagtccgtac gaggaacgtt gccgaatcct      3360
     gcggttggac acacttgaaa aaaggcggca catctcacaa gcatcgttcg ttgccaaagt      3420
     gctggctggc gaaatcgaca gtccctggat cctagcgcag atccaagttt acgctcccga      3480
     aaggccgctc cgccaacgtc catacctgca gctcgcacgt cgcaacacca actatggaca      3540
     acatgagccg attcgattta tgtgtagtcg ttttaatgtt ttttctcaac tctatcgtcc      3600
     taacatttcc acttccatgt ttcaacaacg tgctcgactc tggtattcta gtcagtttta      3660
     atgtatatgt gtcggtgtcg tcgctagttt ttataag                               3697
//
ID   CR1-4_DAn   repbase;    DNA;    INV; 4268 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4268
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 377-377 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..1341
FT                 /product="CR1-4_DAn_1p"
FT                 /translation="MSLICTAKKCEFGGSITGDSYLSCWLCNNCSHIKCAG
FT                 GGHNGRISDLITKNIGLTWSCIACREIESEMRTFMKQTRNGFLDVRKQFAA
FT                 LNEQFLTLETQFLGLKLLSESPRRKIPNNNPMAVNLLGTPASHVIHSDKFL
FT                 TPNTSSPPIVPVEVIHSPSLPMESSMSLVPPIVLDPPSLENLQVPVAPSPR
FT                 PLTGVAPELKSSGLSLRAVAPRKAIFVSRLMPDATVDDVRSHLLKHLKVAP
FT                 NDLAVFKFNFKHKRNISSFKIVIPESYFEKALDPSAWPEHSIIHEFLAKDP
FT                 LNHNFADSAPKN"
FT   CDS           1299..4184
FT                 /product="CR1-4_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RPSESQLCRFSSKKLSNNVFSCCYQNVRSILGKLSQF
FT                 FTKSASFEFDAIALTETWLNSSVSDYEIFVPNYTVFRLDRPSFGGGVLIAV
FT                 SIKYSAELITFPNXFGIEFIAVKITVGPSHIFMTCSYIPPSVDDTVYFHHL
FT                 NAIKYVLSLVNDSDFVLIMGDFNLPQISWIPCEDDNSLHSSCHNDFIDELI
FT                 EIALSQINPILNTLSRSLDLIFCNRISSVTVNRSSPLSLPEDVHHPTLLVS
FT                 VLIDVPNMHNYEAQYRSKCFRKTDYNALRNHLAGIDWEYLSSFNCIDAATD
FT                 SFYEVIHNALDKFVPVLSSSSSTKPPWFNKHLSRLKNRKSRAYKMFLKSGS
FT                 LFHQTNFLYIRNQFILLNNQLYKRYILNCKANFRNDPSSFYSFVNMKRKSS
FT                 LFPPSLSYKNISDSSDHGIANLFASFFQSTYSSDSYNLNSTYPYNIPYINN
FT                 IYLSKFNHLDVSNALSTLDISFSAGPDNVPSCILRYCSDILCYPLTTLFNL
FT                 SLDLSCLPKRWNESFIIPLHKKGSKILIDNYRGIAKLSAIPKLLEKMVTLQ
FT                 LQHHCKSIISSTQHGFVKNRSTTTNLLEFTSIVHKGFLKRMQTDVIYTDFS
FT                 KAFDSVNHRLLLQKLYLMGFPSNIIKWMTSYLSNRTQRVLFKNITSHVIKV
FT                 TSGVPQGSHLGPLLFILFVNDLPSVVSYATTLMYADDVKLCFSYSDHFLHR
FT                 HLQFDLDEVFLWCSNNLLSLNCSKCKVMTFNRSTPHVISYSLGNHFLDRVS
FT                 LMNDLGVLFDHKLSFNEHISLTVNKARGVLAFIKRWSKEFDDPFTTKTLYI
FT                 SLVRPILEYCSCVWSPQYMVHQRSIESVQKQFLLFALKYLNWDSDGLLPPY
FT                 SCRLKLLDLPPLQVRRTCAGAMLLHKLILGQVDSHLLLEKIKFSVPNRSTR
FT                 SFRPLWLPICRSNFADHDPFRVICKNYNLLSHLFSPELSLDVIKSKLFVFL
FT                 LNNFPNS"
XX
SQ   Sequence 4268 BP; 1140 A; 933 C; 678 G; 1516 T; 1 other;
     cagtctttcc tctgactttg ccgtatcccg acgtgttttt tgcgattgct ctcatctcat        60
     tacctacata tatctacata tatctttgat acgagactcc tcttttcgcg tatcattgtc       120
     tgagataatt gacttacata gttcattatc cacacacttc ttaaaaataa tattattctt       180
     caatattatt tctgccgtgc cctgcgaata ttcatatata atatatatat tcctgagtct       240
     attctccgat cgagtaatcc cgttatatca ttgttactct gaagcggtta ttcgtaacat       300
     tcgtatctct tttgttacgt attctcttcg acgtgcctga tccgaacgtg cctctctacc       360
     actgaactct ttgaactcta ccattgaact cttctcgctc tcactacagt ggacaaatct       420
     cagtaaataa tgagtctaat ttgcactgct aagaaatgcg agtttggagg atccatcact       480
     ggagattcgt atctttcctg ctggctttgc aacaactgct cacatattaa atgtgctggt       540
     ggtgggcata atggacggat aagcgatctc atcactaaga atattggtct gacatggtct       600
     tgtattgcct gcagagagat cgagtctgag atgcggacct tcatgaagca gacgagaaac       660
     ggttttcttg atgtccgtaa gcagtttgct gcacttaatg agcaattcct tacacttgag       720
     acccaatttc ttggtctcaa gttactaagt gaatctccaa ggagaaaaat tccgaataat       780
     aacccgatgg cggtcaatct attgggcact cctgcttctc atgtgattca ttcggataaa       840
     ttcttaactc ctaatacttc atcgcctcct attgttcctg tggaagtgat ccattcacca       900
     agtctgccaa tggaatcgtc aatgagtctt gttccaccta ttgtcctgga tcctccatcg       960
     ttggaaaacc tccaggttcc tgtggctccg tcacctaggc ctctcactgg tgtggcgcct      1020
     gagttaaaat cctctgggct ttcgctgaga gctgttgcac ctcgtaaagc catattcgta      1080
     tcccgcctca tgccggatgc cactgtggat gatgtcagga gtcacctctt aaaacatctt      1140
     aaggtagctc ctaatgattt agcggtcttt aagtttaatt ttaaacataa gcgtaacata      1200
     tcctctttca aaattgtaat tcctgaatcc tactttgaaa aagcacttga tccgtcagcc      1260
     tggcccgagc acagtattat tcacgaattt ttagctaaag accctctgaa tcacaacttt      1320
     gccgattcag ctccaaaaaa ctgagtaata atgttttttc ttgctgctac caaaacgttc      1380
     gaagtattct gggtaaactg agccaatttt ttactaagag tgcttctttt gaatttgatg      1440
     ctattgcact tactgaaacc tggcttaatt cctctgtctc tgattatgaa atttttgttc      1500
     caaactacac tgtgtttcga ttggataggc cttcttttgg tggtggtgtc ctcattgctg      1560
     ttagtattaa atactcggct gaactaataa ctttcccgaa tcwgtttgga atcgagttta      1620
     tcgcagtaaa aataactgtt ggtccgtctc atattttcat gacctgttct tatatacctc      1680
     catcggttga tgatacggta tattttcatc accttaatgc tatcaagtac gttttatcat      1740
     tagtcaatga ctctgatttt gtcctaatca tgggtgattt caaccttccc caaatctcct      1800
     ggatcccgtg tgaagatgac aattccttgc attctagttg ccataacgac ttcattgatg      1860
     aactaattga aattgctctt tcccaaatta accccatcct taacacactt agcaggtccc      1920
     tagaccttat tttctgtaat agaatatcct ctgtcactgt aaatcggtct tcaccactat      1980
     cgcttcctga agatgtacac catcccacac tattggtttc ggtgttaatt gatgtcccta      2040
     atatgcataa ctatgaggct cagtatcgtt ctaaatgttt ccgaaaaacg gattacaacg      2100
     ctcttcgcaa tcatttagct ggaattgact gggaatatct ttcatctttt aactgtattg      2160
     atgctgctac tgattctttt tatgaggtaa tccacaacgc gttggacaaa tttgttccag      2220
     tactttcatc gtcttcatca acgaaaccgc catggtttaa caaacacctt tctcgtctta      2280
     agaacaggaa atctagagct tacaaaatgt ttcttaagtc tggatctttg tttcatcaga      2340
     caaactttct ttacattcgt aaccagttta ttcttcttaa taatcaactt tataagcgct      2400
     atattttaaa ttgtaaggct aacttccgaa atgatccgag ctccttttat tcgtttgtca      2460
     atatgaaacg taaatccagt ctttttcctc cttccctatc ttataaaaat atttctgatt      2520
     cttctgatca tggtattgca aatctctttg catcattctt tcaatcaact tattcgtccg      2580
     attcttataa tttaaattct acatacccgt ataatattcc gtatataaac aatatctact      2640
     tgtctaaatt taatcatctt gatgtttcta atgctctttc aaccttggat atctcttttt      2700
     ctgctggtcc tgataacgtc ccgagctgta ttcttaggta ctgctccgat attctatgct      2760
     atcctcttac taccctattc aatttatctt tggacctttc atgccttccc aagagatgga      2820
     atgaatcttt tattattcca cttcataaga aaggttctaa aatacttatt gataactacc      2880
     gtggtattgc taaactttct gctattccca agctgctgga gaaaatggtt acattgcaac      2940
     tgcaacatca ttgtaaaagc ataatttcct ccacccagca tggttttgtc aaaaatcgtt      3000
     ctacaacaac caatttgcta gaattcactt cgatcgtcca taagggtttt cttaaacgaa      3060
     tgcaaaccga tgttatttac accgatttta gcaaagcttt tgattctgtt aatcaccgtc      3120
     tccttctcca gaaactttat cttatgggtt tcccttctaa tatcataaag tggatgactt      3180
     catatctatc taatcgtacg cagcgggttt tgttcaagaa catcacatct catgttataa      3240
     aagtaacatc tggtgttccg caaggcagtc acttaggacc tcttctattt atcctctttg      3300
     ttaacgactt gcctagtgtc gtgagctatg ctactacact tatgtatgct gatgatgtaa      3360
     agctctgttt ttcttactct gaccactttc ttcatagaca tctacagttt gaccttgacg      3420
     aagtattctt gtggtgctct aataatctcc tctcactaaa ctgctcaaaa tgcaaggtta      3480
     tgacgtttaa ccgtagcacg cctcatgtca tctcgtactc acttgggaat cactttttag      3540
     atcgtgtttc cttaatgaat gatcttggag ttcttttcga tcacaagctg tcgtttaatg      3600
     aacatatttc tctaacagtt aataaagcca gaggagtact tgcatttatc aagcgctggt      3660
     caaaagagtt tgatgatccc tttaccacta aaacgttgta tatctctttg gttcgtccga      3720
     tccttgaata ctgttcatgc gtttggagtc cgcagtatat ggttcatcaa agaagtattg      3780
     aatcagtgca aaagcagttt cttttatttg ccttaaaata tttaaactgg gactcagatg      3840
     gtcttcttcc accatatagt tgtcggctaa agttattaga cctgccacca ttgcaggtac      3900
     gtcgtacttg tgctggggcc atgctccttc ataaactcat tcttggtcaa gttgactctc      3960
     atcttttact tgaaaaaatc aaattttctg ttccaaatag gtcaaccagg tccttccgac      4020
     ccctttggtt accaatttgt agatcaaatt ttgcggacca tgatcctttt cgtgttattt      4080
     gtaaaaatta taatctattg tcccatttat tttcccctga attatccctt gatgtaataa      4140
     aatctaaatt gtttgttttt cttttgaata attttcctaa ttcttaatta taattaatta      4200
     attttaaaaa ttgtatatat aaataacaga taattgttac tacttcaata aataaaaaaa      4260
     aaaaaaaa                                                               4268
//
ID   CR1-4_DBi   repbase;    DNA;    INV; 5071 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   CR1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5071
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 924-924 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1703..2854,2805..4973)
FT                 /product="CR1-4_DBi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLTKTQRLELSKFALSDTRDHSIISLLPRSSLTLRNC
FT                 LNFSSTALCGSSRWQHQQQLCPSVPNLDRYALLTATLPSLLRTSCSLLKVS
FT                 SKLRECIDPSLHEKIRIKNTTLLKAICGPTTLGTHEQILPRALDYDALNAN
FT                 PEIVDRAIVSTAPLKIYFQNISGMRTKAEQVYLATSQCEFDVIVLVETWLN
FT                 INFYSNEFFDSNLYHVFRKDRDSTKTHCARGGGVIVAVRCNLRCLSIGLLI
FT                 EDTLLDQVAVSIIGESESLQIVVSYIPPNGSYKLYKAHLENITDIYNNLQD
FT                 HQHICVIGDFNLSSLVWSQDPEHHSSLPSNIHQPHEILFIDDIFSMGLIQV
FT                 NNIFNNLHKILDLVFLSADINFSLVQCSSCRYKLLQFCAFSSNVVHVGINF
FT                 YSFAPSAEYSPRFIFNETSLCAIRNEISAINWESVLSHVSLESCYDTFLVV
FT                 ILNIIKNNARERVHNLFKLPWYTKGLKKLKNLRNKFYKRFLVTQDPGDWNR
FT                 HLQHKREFEFLNKFLYNQYIASVENGLKSNPNSFWRFINSKKSASSVPSAM
FT                 FLGNLSSNSNTETANLFASYFKANFEPTAAWNDSQTLNAITPLLNLGSLTV
FT                 LEENIHRAVEDVDESYTPDCDGIPAYFLKHCIEVLCVPLKILFDKSLSSGH
FT                 FADRWKVASVTPILKSGPKNNIANYRPIAKISNIAKLFERIVAHKLSFLVK
FT                 TYISTSQHGFVAGRSTTTNLAVFSNYCIHAFNMRYQVDAIYTDFAKAFDKV
FT                 SHSALLAKLARLGIHSALLNWIKSYLHHRLYRVNINGKFSDSYLATSGLPQ
FT                 GSAMGPLLFIIFINDVRFCLSSECLLYADDLKIFKSIKLATDSQLVQHDLV
FT                 SLSSWCSRNSLPLNISKCFYVTYSKSAYNIVTSYNINGQPLQLRQESLDLG
FT                 VLFDSKFKFAAHFDYIMPRAYAMFGFVKRNASLFTDPYTRLALYFAFVRSK
FT                 LEYASLIWNPFTTTHGNRIERLQKQFLKFALLPLRFLDPTPSYHQQCRLVH
FT                 LPSLEHRRSILAICFISDLLDGSIDCPELLSKVGFHAPPRQLRNFDPFFLE
FT                 LRRTNYSKNEPLYRALYESNALPIDMQLDYFSSKSNLKHRLVNYFVNFST"
FT   CDS           join(76..906,852..1334,1195..1680)
FT                 /product="CR1-4_DBi_1p"
FT                 /translation="MNSYSCSECNAEVTAAQLRGFEAVRCSSLCRRTFHTA
FT                 CVDLPEDAIRLLTSMPNLLWQCDRCVVSNDSYSKIDEVMEELHDLKSLYMD
FT                 LNSKFLKAFPNSTTDNSNVSQRKKMVKPLAPPSSIGRQANHADLIPPAPVS
FT                 TAARNHAKNNRNKRQIVGQAPNCELLEVVPSNKFLHIGRFRAHVKSDSVCE
FT                 YVANKLGVDTATIICKPLVKNGVDVATLEFVNFKLGIPEQHFQTVFSDAFW
FT                 PNPIKISRFIHRDRPIVDGNVLDLHNHHTSESKNPQWERSGFAQSSYIGIK
FT                 KPPIIGASGVDLTTANFYDPLPHLHATYSQCQRPLVSISLTATITLSYAAP
FT                 SALLSIGRPSLTNQKHYQLDFSFLVLSNVHQTLTGEALSPDSVKIPALSAL
FT                 FGDVHSSQSKQRRHQLDLSLSISRDVCQTLSGELLSSYFIKFLLALSSEMC
FT                 THHNQSNVGISWICRCLFRATFVKRSLESCSHHISSNSCSKRALRSCALIT
FT                 VKQTTTSAGVVVVCFARHSSTLIDEALSSYSITHLPLGMCMHHYQSNNNIS
FT                 LSCRCLFRTTIVKRSLETALIILHQDSCSKRARRSCALITIEPTTTSAGVV
FT                 VV"
XX
SQ   Sequence 5071 BP; 1415 A; 1116 C; 969 G; 1571 T; 0 other;
     aaaatatccg attacatatt atcaaatgct tctctgatta gcattcgttg tagtcagacg        60
     tgttttcttt tcgctatgaa ttcttattcg tgctccgagt gcaatgctga agttacagca       120
     gcgcagcttc gcggttttga ggcggttcgt tgctcatcgc tttgtcgtcg tacttttcac       180
     actgcatgtg ttgatctccc ggaggatgct attagattat taacaagtat gccgaatcta       240
     ctctggcagt gtgatcgctg tgttgtgagt aatgattcat actccaaaat cgatgaagta       300
     atggaagaac ttcatgacct gaagagtcta tacatggatt taaattcaaa gtttctgaag       360
     gcttttccca attctaccac tgacaatagc aatgtcagtc agcgtaaaaa aatggtgaaa       420
     ccattggctc caccttcttc aattggtcgt caagccaacc atgcagacct gatacccccc       480
     gcaccagttt ctactgccgc caggaaccat gcaaagaata acaggaacaa gaggcaaata       540
     gttggtcaag ctcctaattg tgaacttctc gaagttgtgc cgagcaataa attccttcat       600
     attggtagat tcagagcgca cgtaaaatct gattctgtgt gtgaatatgt tgcaaataag       660
     ctaggtgtgg ataccgccac cataatttgc aagcctttag tcaaaaatgg tgtagatgtt       720
     gctacactgg aattcgtcaa ttttaaatta ggaatacctg agcagcactt tcagactgtg       780
     tttagtgatg cgttctggcc caatccaatc aagatcagtc gattcatcca cagggatagg       840
     ccgattgttg atgggaacgt tctggatttg cacaatcatc atacatcgga atcaaaaaac       900
     ccccaataat cggcgcctct ggtgtcgatt tgactacggc aaatttttat gatcctcttc       960
     ctcatcttca tgctacttat tcgcaatgtc aacgtccgct ggtttcgata tcgctaactg      1020
     ctaccattac tctctcatac gccgctccca gtgcactctt aagtattggg cgcccgtcac      1080
     tcacaaatca aaaacattat cagctggatt tttcctttct tgttctgtct aacgttcatc      1140
     aaacgctcac tggagaggcg ttgtcaccag attccgttaa gattcccgct ctaagcgctc      1200
     tcttcggaga tgtgcactca tcacaatcaa agcaacgtcg gcatcagctg gatttgtcgt      1260
     tgtctatttc gcgcgacgtt tgtcaaacgc tctctggaga gctgctctca tcatatttca      1320
     tcaaattcct gctctaagcg cgctcttcgg agttgtgcgc tcatcaccgt caaacaaaca      1380
     acaacgtcag ctggagttgt cgttgtctgt tttgcgcgac attcgtcaac gttgatcgat      1440
     gaggcgctct catcatattc aatcactcat ctccctctgg ggatgtgcat gcatcactat      1500
     caaagcaaca acaacatcag cttgagctgt cgttgtctgt ttcggacgac gatcgtcaaa      1560
     cgctctttgg agaccgctct catcatactt catcaagatt cctgctctaa gcgcgctcgt      1620
     cggagttgtg cgcttatcac aattgaacca acaacaacgt cagctggagt tgtcgttgtc      1680
     tgaattgtgt tacgttcgtc taatgctcac aaaaacccaa cggctggagc tttcaaaatt      1740
     tgctctgagt gatactcgtg atcacagtat catttcctta ttaccgcgct cctctctgac      1800
     gctacgaaat tgcttgaatt tctcatcgac tgctttgtgt ggctcttccc gatggcagca      1860
     tcaacaacaa ctttgtccat ctgtccccaa cttggataga tatgctctgt taacggcgac      1920
     attgccatcg ctcttaagaa ctagttgctc tttactaaaa gtatctagca aacttaggga      1980
     atgcatcgat cctagtctgc atgaaaaaat tcgtattaaa aacactacat tactgaaggc      2040
     gatctgcggg cctacaacat tgggaacgca tgaacaaata cttcctaggg cattggacta      2100
     tgatgcctta aatgcgaatc cggaaattgt tgatcgtgct attgtgagta cggccccact      2160
     aaaaatttat tttcaaaaca tctccggaat gcggacaaag gcggagcaag tataccttgc      2220
     cacatcccaa tgcgagtttg atgttatagt tttagttgaa acttggctca acataaactt      2280
     ttactcaaat gaattcttcg actccaattt gtaccatgtg ttccgcaaag acagagatag      2340
     cacgaaaacc cactgtgcta gaggaggtgg tgtaattgtt gctgttcgct gcaatttgcg      2400
     ctgcttgtca attggacttc tcattgaaga tacccttctt gatcaagttg cggtgtcgat      2460
     aattggagaa tcggaatcgc tgcaaattgt ggtgtcatac ataccaccga atggttcata      2520
     taaactttac aaggctcatc tggaaaacat taccgacatc tacaataatc tgcaggacca      2580
     tcaacatatc tgtgtgattg gagactttaa tctatcatcc ctcgtttggt ctcaggatcc      2640
     ggagcatcac tcttcactgc caagcaacat acatcaacca cacgagattc ttttcatcga      2700
     tgatattttc agtatgggct taatacaagt caataatata ttcaataact tacataaaat      2760
     tttagactta gtattcctta gcgctgatat taacttttct ttagtccaat gtagttcatg      2820
     taggtataaa cttttacagt tttgcgcctt cagctgaata ttcacctaga tttattttca      2880
     atgaaaccag cctttgtgcc atcagaaatg agatctctgc cattaactgg gagtcagttt      2940
     tatcacatgt cagtttggag tcgtgttatg acacattttt agttgttatt ttaaacatca      3000
     ttaagaacaa tgctcgagaa agggtccaca atttgtttaa gttgccatgg tatacgaaag      3060
     gtttgaaaaa gcttaaaaat cttcgaaata aattctataa aaggttttta gttacacagg      3120
     atcctggtga ttggaataga cacttgcagc acaaacgaga atttgaattt ctaaataaat      3180
     ttctttacaa tcagtatata gcgagtgttg agaacggcct aaaaagtaat cccaactctt      3240
     tttggcgatt catcaattca aagaaaagtg cttcttcagt tccatctgct atgttcctag      3300
     ggaatttatc ttccaattca aatacagaaa ctgcaaatct ctttgcctct tattttaaag      3360
     ctaattttga gccaacagca gcctggaatg attctcaaac cttaaatgca atcactcctc      3420
     tattgaattt aggtagttta accgtgctag aagagaatat tcatagggct gtggaagacg      3480
     tggatgaatc gtacactccg gactgtgatg ggattccggc ctactttctg aaacattgta      3540
     tagaggtgct atgcgttcca ctaaaaattc tgtttgataa atcactatct agtggacact      3600
     ttgcggatag atggaaggtc gcatccgtga ctccaatttt aaaatcaggg ccgaagaata      3660
     acattgccaa ttacaggcct atagcaaaga tcagtaatat cgctaaactc ttcgaacgca      3720
     ttgttgccca taaattatca tttcttgtaa aaacatatat aagcacttct cagcatggtt      3780
     ttgttgcagg tcggtcaact acgactaatc ttgccgtttt cagcaactat tgcattcatg      3840
     cctttaatat gcgatatcag gttgatgcta tttacaccga ttttgcgaaa gcctttgaca      3900
     aagttagcca cagtgcccta ctggcaaaac tggcccgctt gggtatacat tcggcactac      3960
     taaattggat aaaatcatat ttacaccatc gactttatag agttaatatt aatggaaaat      4020
     tctcggattc ctatttggca acctctggcc tccctcaggg gagtgctatg ggacctctgc      4080
     ttttcatcat tttcattaat gatgtgaggt tctgtctatc ttcagagtgt ctcctgtatg      4140
     cagatgattt aaaaattttt aagtctatta aattagcgac agactcacaa ttggttcaac      4200
     atgacttagt ttccttgagc tcttggtgta gccgaaactc gcttcctctt aacataagca      4260
     agtgcttcta tgtcacttac agtaaatccg catacaatat cgtcacatct tataatatca      4320
     atggtcaacc tctacaactg cggcaggaat ccttggatct aggagtgttg tttgactcaa      4380
     aatttaagtt tgcagcacac ttcgattaca tcatgcccag ggcctatgct atgtttggat      4440
     ttgtgaaacg gaacgcatcg ctattcacgg atccctacac cagacttgcg ctttattttg      4500
     catttgtccg atctaaacta gaatatgcgt ctcttatttg gaatcccttc actaccactc      4560
     atggaaacag aatagaacgt ctacagaaac agtttttgaa attcgcgttg ttgccgctaa      4620
     ggtttttaga ccctacccct tcataccacc agcaatgtag gcttgttcac ctaccatccc      4680
     ttgagcatcg tagaagtatc ctcgccattt gcttcatctc tgatttgttg gatggtagta      4740
     ttgactgtcc agaactgcta tcgaaagttg gttttcacgc cccgcctagg caacttcgga      4800
     attttgatcc ctttttcctc gagctgcggc ggacaaatta ttccaaaaac gagcccctct      4860
     atagggcctt atatgagtct aacgcacttc caattgatat gcaattggac tacttctcaa      4920
     gtaaatcaaa tcttaagcat aggttagtca attattttgt aaattttagt acgtaagata      4980
     agttgttgaa atgttcaagt agccagtaaa ggaattccgt tggcgaaatg aaataaataa      5040
     ataaatagta atttcatact gatgggtaat a                                     5071
//
ID   CR1-4_DEl   repbase;    DNA;    INV; 4570 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4570
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 551-551 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           613..1653
FT                 /product="CR1-4_DEl_1p"
FT                 /translation="MTIACTANKCEYNGIISGDTYLICWLCDNCSHVKCAG
FT                 AGFNGRVGDLISKRVGFTWSCTSCRKMTDEMRTFMRQTRTGFAEVRKLFNA
FT                 MNDKFLAVESQFLGLKILSESPNRKIPNNNLQLPVHDLPSISTPTNANNMD
FT                 LSPNYLTPSLPLAHTTPSGPSSVPSRASLATESLGNVLPEENMASLGLHLA
FT                 PVATNSAPASASTSGAVSFSNDMPGPSLAAPRRTNVPLSGVPRSNRPRNSE
FT                 ATSDVSGIPLRGVIQKSIFVTRLNPEATAEDVRIFLCEKLQAPDNAISVHK
FT                 FIFKQKRNISSFKIRITDSYFSKALDSTLWPVNTLVHEYLQKNQPRGSNSA
FT                 VSKN"
FT   CDS           1602..4484
FT                 /product="CR1-4_DEl_2p"
FT                 /note="apurinic endonuclease and reverse
FT                 transcriptase."
FT                 /translation="VSSEKPASWLKFSCFKKLRKTNLSILYQNVRSLLGKL
FT                 SKVYVNSLSTDADVIALTETWLNSSVSDQEIFVDKFVIYRTDRISLGGGVL
FT                 IAVHNSLSSEIFPFKNPLSIEFVAVKININNINIYITCSYIPPRSDTSLYL
FT                 MHLSAIQLVSSSIADEDHLIIMGDFNISNVSWISSLDSNLLFAESQHDFID
FT                 GLTDLSLGQINFVKNHLDRLLDLIFVNNDTLANVLRSPPFSLPEDPYHPTL
FT                 LLNVEIVAEIQTKAALRVKCFRNANFVGLHQHLSAIDWSFLKSCNDIETAV
FT                 SSFNLTLQSSLNLFVPEVSVSDSSKPPWFNRHLSYLKNKKSRLYKKYLKSN
FT                 SAVDFSNYVTSRVLFFNASKLCYECYIAQCRDNIRNDPKSFYSFVNSKRKS
FT                 NAYPSTMYLHNRTESSSLDISNLFANFFQSTYSLQSYDFSTPYPYDLPCIN
FT                 NIFVPQFEVSDVLKALLSLETSYSAGPDNIPSCVLRNCAEALSWPITFLFN
FT                 LSLLSSEFPRIWNESFIIPIHKKGSRSDVENYRGIAKLSAIPKLFEQLVTC
FT                 QLQHMCASIISPAQHGFVKQRSTTTNLLEFSTLIHRSFLNKCQTDVIFTDF
FT                 SKAFDSVSHSLLLHKLSLLGFPPNLLNWISAYLSNRTQRVLFNNQLSSVVN
FT                 AFSGVPQGSHLGPLLFVLFINDLPKVVSFASTLMYADDVKICLSFSDQMSY
FT                 LRLQSDIDQLQLWCSNNLLLLNHTKCKCMSFYRTTAHIHSYHLGNSTLERI
FT                 TQVTDLGVLFDSKLCFKSHISVIIGKAKGVLAFIKRWAKEFDDPYTTKTLY
FT                 ISMVRPILEYCXCVWSPQYIDQQKLIESVQKQFLLFALRQLNWDPVRRLPP
FT                 YSSRLMLIDLKSLKHRRMCSGVIFLHKLLIGEVNSGLLLSYINIAVPSRFT
FT                 RTFRPIHLPICRSNFALHEPFRVLCSNYNAVYPAISLENSIDRISSNIYAF
FT                 LESYNI"
XX
SQ   Sequence 4570 BP; 1192 A; 1087 C; 775 G; 1515 T; 1 other;
     ggcgcagaga ctttcatcta atcggacgtg taattcgacg ctcctctttc acactgtgtt        60
     cttccggagt tttacgtatt ttacctagct cagttgtctt gtcagtaacc ctacaaccta       120
     cataaatacg tattacatat agacattaaa agttaatgac ggtttattta aattaaaaca       180
     agctaccaat tgactatttt tcttattgct ctgcttggtt cagcgtttac cgctaatcct       240
     aaagtttggt gctgttagtg acactacgct cttagtgctc tccgcgtaca tttacacgaa       300
     gctgcattcg ttgcacttgt ttcgatcggt tgctcaacgc tcacatccga ccgctctctg       360
     taccgctgct gctgctcttc aacgctcaca cgctctctgc cctgctgctg ctctgctgtt       420
     caacgcttac atctgaccgc tcttcacccc gctgctgctt caacgtttat acggtatatg       480
     ctccgctgct gttaagcgct tgcagctgtt gcccaacatt tctcgctcac gctcgaggct       540
     gatacggatg ctcatatact acacccgcgc tcccctcttc ttctgtgcac agtgatctga       600
     taattaacca aaatgaccat cgcttgcact gctaataaat gcgagtataa tggcattatt       660
     agtggcgata cctacctcat ctgctggtta tgtgataact gttcgcatgt taagtgtgct       720
     ggagctggct tcaacggccg tgttggggat ttaatctcca aacgagttgg ttttacctgg       780
     tcctgcacgt cttgccgcaa gatgacggat gaaatgcgta cgttcatgag gcaaactagg       840
     actggatttg ctgaagttcg taaactcttc aatgctatga atgacaaatt cctggcagtg       900
     gaatctcagt ttcttggact taagattctt agcgagtcac cgaatagaaa aatcccaaat       960
     aataatcttc aacttcctgt tcatgattta ccatccatct cgacgccaac taatgctaat      1020
     aatatggacc tttcgccgaa ctacttaaca ccgtctctgc cactggctca cactacccct      1080
     tctggacctt cttctgttcc ctcgcgtgcc tcattggcta cggaatcact tggtaatgtt      1140
     ctaccggaag aaaacatggc ctctcttgga ttacatctgg ctcctgttgc taccaactct      1200
     gctcctgcat ccgcttctac atctggtgct gtttccttct ccaacgatat gcctggccca      1260
     agccttgcgg ctcctagacg cactaatgtc cctttaagtg gtgttccgag aagtaaccgt      1320
     ccaaggaata gcgaggcgac ttctgatgtc tctgggattc ctctgagagg ggttattcaa      1380
     aaatcaatat tcgtgacgag acttaatccc gaagccactg ccgaggatgt taggatcttc      1440
     ctctgtgaga aactgcaggc cccggacaac gctatttctg tacataagtt catttttaag      1500
     caaaagcgca atatctcttc ttttaaaatt cgtatcactg attcttattt ctctaaggca      1560
     cttgattcta cactttggcc agttaatact ttagtacatg agtatcttca gaaaaaccag      1620
     cctcgtggct caaattcagc tgtttcaaaa aactaagaaa aacaaatctg tcaattttat      1680
     accaaaatgt gcgaagccta ctgggtaaac tgagtaaggt gtatgttaat agtctttcca      1740
     ccgacgccga cgtcattgct ttaactgaaa catggctaaa ctcttcggtt tccgatcaag      1800
     aaatattcgt tgataagttt gttatctata gaactgaccg catctccctg ggcggtggcg      1860
     tgttaattgc agttcacaac tcactttcat cggagatttt tccttttaaa aaccctcttt      1920
     ccattgaatt cgttgcagtt aaaattaata tcaataacat taatatttat ataacttgct      1980
     cttacattcc tcctagatct gatacttctc tctatttaat gcacttgtct gccattcaat      2040
     tagtatcctc ttctattgcc gatgaggacc acctaattat aatgggagat tttaacatat      2100
     ctaacgtgtc ttggatctct tcattggact ccaatctcct ttttgccgaa agccagcacg      2160
     actttatcga cggcctgacg gacttgtctc tgggccagat aaactttgta aagaaccatt      2220
     tggatagact tctcgactta atatttgtta ataacgacac tctagctaat gtcctcagaa      2280
     gccctccctt ttctctgcct gaagacccct atcatccaac cctgttgttg aatgttgaga      2340
     tcgttgcaga aattcagact aaggcggcct tacgcgtaaa atgtttccgc aatgccaatt      2400
     ttgttggttt acaccagcat ttgagtgcta tcgattggtc cttcttaaaa tcatgtaatg      2460
     acatagaaac tgcagtgtca tcctttaatt tgacattgca gtcgtcatta aatcttttcg      2520
     ttcccgaggt atcggtaagt gactcttcta agcccccatg gttcaatagg cacttgtctt      2580
     acctcaaaaa taaaaaatcg aggctgtata aaaaatactt aaaatccaat tctgcggtgg      2640
     atttttccaa ttatgtcacg agccgcgtgc tgttctttaa tgcctctaaa ctttgttatg      2700
     aatgctacat cgctcaatgt agagataaca ttcgtaatga tccgaaaagt ttttactcct      2760
     ttgtaaactc caaaagaaaa tcaaatgcgt atccctcaac tatgtattta cacaaccgaa      2820
     ctgaatcatc atctttagac atttctaatc tttttgcaaa cttttttcag tcaacctact      2880
     ctcttcaatc ctatgacttt tccactccct acccttatga tctgccctgc atcaataata      2940
     tttttgttcc tcaatttgaa gttagcgatg ttcttaaagc ccttctgtcg ctggaaacgt      3000
     cctattccgc gggccctgat aacatcccta gctgtgttct aagaaactgt gccgaagctc      3060
     tgtcttggcc aatcactttt ctatttaact tatctttatt atcttcagag ttcccgagaa      3120
     tttggaatga atcttttatt attccaattc ataaaaaagg ctcaaggtcc gatgtcgaaa      3180
     attatcgtgg tatagccaaa ctttctgcca tacctaagct ttttgaacag ctggtcactt      3240
     gtcaacttca acatatgtgt gcctccatca tctctcccgc acagcatggc tttgtaaaac      3300
     aacggtcgac cactactaat cttctcgaat tttctactct catccaccgt agtttcctaa      3360
     ataaatgcca aactgacgtt atttttactg acttcagcaa ggcatttgat tcagtaagcc      3420
     atagccttct ccttcataaa ctatctcttc ttggttttcc acctaattta cttaactgga      3480
     tttctgccta tctttcaaac agaactcaac gcgttctctt caataatcaa ctttcctccg      3540
     tcgtaaatgc tttttctggt gtcccccaag gaagtcatct ggggccacta cttttcgttc      3600
     tttttattaa tgatcttcca aaagtagtgt catttgcctc tactctaatg tatgcggacg      3660
     acgtaaaaat ttgcctatca ttctctgacc aaatgtcata ccttcgccta cagtcggaca      3720
     ttgatcaatt acaattatgg tgttccaaca atttgttgct tcttaatcac actaaatgca      3780
     aatgtatgtc cttttaccgg actacagccc acatacactc ttaccatctt ggaaactcta      3840
     ctttagaacg tattacgcaa gtaactgatc taggtgtcct atttgatagc aagttatgtt      3900
     tcaaaagcca tatttctgtc atcattggta aagctaaggg tgttttagcc ttcataaaac      3960
     gttgggccaa ggagtttgac gacccgtata caacaaagac tctttacatt tccatggttc      4020
     gccccatttt ggaatactgc kcatgtgttt ggagccctca atatattgat caacaaaaat      4080
     taatcgagtc agtccaaaag caatttttat tatttgctct ccgacagctg aattgggacc      4140
     cggtgaggcg tttgccacct tactcttcaa ggttaatgtt aattgatcta aagtctttaa      4200
     aacatcgtag aatgtgcagc ggagtaattt ttttgcataa gcttctcata ggtgaggtga      4260
     attctggcct cctcctaagc tatattaaca tcgctgttcc ctcaagattt actcgtactt      4320
     ttcgacctat tcacttgcca atttgtagat ccaactttgc ccttcatgag ccctttcggg      4380
     tgctttgttc caattataat gcagtatacc ctgcaatatc tttggaaaat tctattgatc      4440
     ggatatcatc taacatttat gcttttcttg aatcatataa tatttagtta gttttaagtt      4500
     atatttattt ttagcatata tgtgtaagtt agcagttcat tgttaactat aaatcaataa      4560
     atcaataaca                                                             4570
//
ID   CR1-4_DK    repbase;    DNA;    INV; 4558 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4558
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1331-1331 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..933
FT                 /product="CR1-4_DK_1p"
FT                 /translation="MLCAECNLEVSASQLRSTEAVRCASLCRRVFHAACVD
FT                 LPADAIKLLLNPNILWQCDGCVVANDSHSKIDELDSKIKNLECLYQHLNSK
FT                 FSEAFPTKGDSIEHTNNVTVRPSRRQAANATVAPQSYAAAASSSSVQGQGL
FT                 RPPNAERDGFVKVLHRKRKNNNNNKKTVVGVASASDXLQVLPIVKYLHAGK
FT                 FKAATEPEAVLNYVSSKLNVDAKAFSCIKLIKKDVDISTLKFVNFKLGVPD
FT                 QHYKAVFSNEFWPCSVKVKRFVHRERTNKEDTIIELGGPARTSTPTHSSKN
FT                 PQ"
FT   CDS           933..4484
FT                 /product="CR1-4_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIDAAGVDAFVDHTLLAHSPRNHMLGLSPQRSQHLHL
FT                 SPRLRSSSSFSMLQQQHQPVLLPSLLCDIRLGLALSSTLSTPPLLQQFWLE
FT                 LLYSSSALRVDAALCLVSPLDLLRLLWMLCAGWARSLDALYGFAHQQQQLM
FT                 QADVIAAGLQFSAGPALLRNYIRSFQLASTHLDFMKPIKIGTISLLKAASG
FT                 LVAHKPHLGSSNCAIDDMVVPPAYPESAHPSSSLVNGDSPSLKIYFQNISG
FT                 MRTKTGAVYLATSSCDYDVIILVETWLNMDFFDNEFFDANLYQVFRKDRDA
FT                 AKTQCSRGGGVLIAVRRTLMCSSIRLWNDDSLLDQLCVSLAGPVETILLVV
FT                 SYIPPCSSFELYKAHVDNIARISQDLEDSQSICVFGDFNLSSLVWVHGVDS
FT                 PAMIPSNLHLPQEILVIDDLFSLGLVQINHVFNKLHKLLDLIFVSQDLNLN
FT                 LVCSSNPISECDAHHQPLLISLFTYIFSPYKPSTSSLYINMNNLNLIRNDI
FT                 KLVNWVEVLSHDNLDTCYDNFLITISAIIKKYAKKRLFCSYKLPWYTHGLK
FT                 KYKNLRNKFYKRYVENGNSADFDRYKQHKREFEFLNKFLYNQYIADVEMRL
FT                 INNPKSFWHFVNSKKTTSYIPSHMSLDNSSASSDIEVANLFAKYFASNFEP
FT                 LSSWNDDFTLRSIAPSSNIGSLYVTESDCQLAVESLNDSEKFDCDGLSPFI
FT                 LKSCIGVLSEPLHNNLQQIPLQRCFHSEMEAGYSYSHFQVRRKNIISNYRP
FT                 IAKLSNISKMFERIVAKQLAFLTGSTISPNQHGFMPGRSTTTNLAVFNHFC
FT                 INAFSRQKQVDVVYTDFAKAFDKVCHSALLAKLEKIGFHSSMLNWIRSYLD
FT                 GRWYRVVCNDHSSSPYIATSGLPQGSALGPFLFVLYINDIGQCFKSSEFLL
FT                 FADDLKIFKSVSSVLDSNMLQDDLARVGDWCSRNKLPLNLSKCFTVTYSKR
FT                 LNNSLFPYSIDSCLLACKTEALDLGVMFDAKFLFIDHINYIVPKAYAMYGF
FT                 IKRNAAQFTDPYTKLSLXFSFVRSKLEYASFIWNPTGSVHSNRLERIQKKF
FT                 LCFALNSLNFHEPVPSYSAKCRLVHLSSLHDRRIVASLLVIFDIISCKIDC
FT                 PALLRCIHFSVPSRHLRAFEPFFLPICRTNYALNEPIYRALCFYNNLPPNM
FT                 RLDPSSPRALIKNEFLLYLSTINVS"
XX
SQ   Sequence 4558 BP; 1184 A; 1038 C; 894 G; 1437 T; 5 other;
     agtcgttgac tagctttcaa agcgttcgga cgtgccatta tcgctatcgt tatgttgtgt        60
     gccgagtgta atttagaagt ttcggcatcc cagcttcgct ccacagaggc tgttcgctgc       120
     gcttctcttt gccgtcgggt atttcatgct gcctgcgttg atttgcctgc tgatgcaatc       180
     aaactcttac ttaatccgaa tatactgtgg cagtgcgatg gctgtgttgt agccaatgac       240
     tcgcactcaa aaattgatga actcgattct aaaatcaaaa atctagagtg tttgtaccag       300
     catctaaact ctaaattttc ggaagctttt cctaccaaag gggactcaat agaacacacc       360
     aacaacgtca ccgttaggcc tagccgtagg caagctgcta atgcaacggt agctcctcaa       420
     tcgtatgctg ccgctgcttc ttcatcgtcg gtccagggcc aaggtctacg acccccgaat       480
     gctgagagag acggttttgt aaaagttcta cataggaaga ggaagaataa taacaataac       540
     aaaaaaaccg tcgttggagt tgcatckgct tcggatwctc tccaagtctt gccaatcgtc       600
     aaatatctac atgccgggaa gttcaaagcg gctacggagc ccgaggctgt tttaaattat       660
     gtctcttcca aattaaatgt tgatgccaaa gcgttttcct gcatcaaact tataaaaaaa       720
     gacgtggaca tatctacttt aaaattcgtc aacttcaaac tcggcgttcc tgaccaacat       780
     tataaggctg tcttcagtaa tgagttttgg ccttgctctg ttaaggtcaa aaggtttgtc       840
     catagggaga ggacaaataa agaggatacc attattgagc tgggtggacc tgcaagaacg       900
     tcaaccccca ctcattcgtc aaaaaacccc caatgatcga cgccgctggt gtcgacgctt       960
     ttgtggatca tactcttctt gctcattccc cccgtaatca tatgctcggg ctaagcccac      1020
     agcgctcgca gcatcttcat ctttctccgc gcctgcgctc gtcatcatcg ttttctatgc      1080
     tacaacaaca acatcagccg gtgcttttgc cgtctctttt atgcgatatt cgccttggct      1140
     tggcgctttc gtccacgctc tcaacgcccc cgctgctaca acaattttgg ctggagttgt      1200
     tgtattcatc gtctgctttg cgtgtagatg ccgctctctg cttggtttcg ccgttggatc      1260
     ttctccgtct tctttggatg ctgtgtgctg gctgggcgcg ctcccttgat gctctttatg      1320
     gatttgccca tcaacaacaa cagctgatgc aggctgatgt cattgctgct ggattgcagt      1380
     tctctgcagg cccggctctc ttaagaaatt atattcgctc ttttcaactt gcttcgacgc      1440
     acttggattt tatgaaacca atcaagattg gaactatatc gctacttaag gctgcctctg      1500
     gactagttgc tcataaaccg cacctcggct catcgaactg tgcaatagat gatatggtgg      1560
     tgccccccgc ttatcctgaa tctgcgcatc cctcctcatc cttagtgaat ggcgatagcc      1620
     ccagcctaaa aatatatttt caaaatatat ccggcatgcg tacaaagact ggcgctgtct      1680
     atttggccac atcgtcctgt gattatgatg tcattatact agttgaaact tggctcaaca      1740
     tggacttctt cgataatgaa tttttcgacg ccaatcttta ccaagtattc cgaaaagacc      1800
     gggatgctgc taagacgcaa tgctccagag gtggaggagt tcttattgct gtgcgccgta      1860
     ctctgatgtg cagttccatc cggctttgga atgatgactc ccttcttgat caactttgtg      1920
     tgtctctcgc cggacccgtg gaaactattc ttctggtggt atcatatatt cccccatgca      1980
     gcagtttcga actgtataag gctcatgtgg ataacatcgc ccgtattagt caagatcttg      2040
     aggattcgca gtctatctgt gtttttggcg actttaatct ttcctcgctg gtgtgggtgc      2100
     atggagtgga ctcaccagca atgattccca gtaacctgca tctgcctcag gaaatcttgg      2160
     tcatagatga tcttttcagt ctcggtctgg tccagataaa tcacgtattt aataaattac      2220
     ataaacttct agatctaatt tttgtaagtc aagatcttaa cttaaatcta gtttgcagta      2280
     gtaatcctat ttctgagtgc gatgcccacc accagccctt actgatttca ttatttactt      2340
     atatattttc gccttataaa ccaagcacat cttcattgta cattaatatg aacaatttaa      2400
     atttaattcg taatgatatt aagcttgtta attgggttga ggtcctttcg catgataatt      2460
     tggacacttg ctatgataac tttttaataa ctatttcagc tatcattaaa aaatatgcna      2520
     aaaaaaggct cttttgctcg tataaattac catggtatac gcatgggctt aaaaaataca      2580
     agaatctcag aaataaattt tataagcgat acgttgaaaa tggtaattct gcagacttcg      2640
     atagatataa acagcataag cgcgaattcg agttcttaaa caagttcttg tacaaccaat      2700
     acatagcaga tgtggaaatg agactaatta acaatcctaa atctttctgg cattttgtta      2760
     attcgaagaa aacaacatca tacatccctt cccacatgtc attagataac tcgtcagcat      2820
     catctgatat cgaagtggca aatctgtttg ccaaatactt tgcgtcgaat ttcgagccat      2880
     tatcctcatg gaatgatgat ttcacgcttc gwtccattgc tccaagctct aatattggga      2940
     gcttatatgt cactgagtcc gactgccaac tcgctgtgga gagccttaat gactctgaaa      3000
     aattcgactg cgatggtctc tcacctttta tattaaaaag ttgtattggc gttctttcag      3060
     agccacttca taataatctt caacaaatcc ctctccagcg gtgttttcac tcagagatgg      3120
     aagctggcta cagttactcc cattttcaag tccggcggaa aaatatcatc tccaattaca      3180
     ggccaattgc aaagcttagc aatatatcta agatgtttga gcgaattgtt gctaagcagc      3240
     tcgcctttct cactggtagc accatcagcc ctaaccagca cggctttatg ccaggacgtt      3300
     cgactaccac gaacttagct gtttttaacc acttttgcat taatgccttt tcgagacaaa      3360
     agcaagtgga tgtggtatac actgactttg ccaaagcatt tgataaggtc tgccatagtg      3420
     ctttgttggc taagctcgaa aaaattggct tccattcatc aatgctgaat tggataagat      3480
     cttacttaga tggccgttgg tatagagtgg tgtgcaatga tcattcttcg agtccgtata      3540
     tagcgacgtc tggccttcct caggggagtg ccttgggccc ttttcttttt gttttatata      3600
     taaatgacat tggccaatgc tttaagagct cggaattttt attgtttgcc gatgatctga      3660
     aaattttcaa gtctgtaagt tctgtcctgg atagcaatat gcttcaggat gatttggcta      3720
     gagttggaga ttggtgctct cggaataagc tgcccttaaa cctgtccaaa tgtttcactg      3780
     tcacatacag caaaaggctc aacaattcgc tttttcccta ctcgatcgat tcctgcctcc      3840
     ttgcctgcaa gactgaagca cttgacttgg gagttatgtt tgatgctaaa ttcctcttca      3900
     ttgaccatat aaactatata gttccgaaag cgtatgctat gtatgggttc ataaagcgta      3960
     atgcggctca attcactgac ccttacacca agctcagctt atwtttttct tttgtaaggt      4020
     ccaagcttga gtacgcttcg ttcatttgga acccgactgg atcggtacat tccaaccgcc      4080
     tagaacgtat tcagaaaaag tttctgtgtt ttgcccttaa ttccctaaat ttccatgaac      4140
     cagttccctc ctattccgct aaatgtcgtc ttgtgcactt gtcatctcta cacgacagga      4200
     gaatcgttgc tagtctactt gtcattttcg acattatttc gtgcaaaatc gattgtcctg      4260
     cattgcttag atgtatacat ttttctgttc ctagtaggca cttaagagcg tttgagcctt      4320
     ttttcttgcc tatttgtcga acgaattatg cattaaatga gcccatttat agagccttat      4380
     gcttttacaa caatcttcca ccaaacatgc gattggaccc tagctcacca agggccttaa      4440
     ttaagaatga atttcttctt tatttatcca caattaatgt tagttagtta agtcagttaa      4500
     gctttagtta agtagccaga taaggtttac cgttggcgaa ataaatgaaa taaataaa        4558
//
ID   CR1-4_DRh   repbase;    DNA;    INV; 3203 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.08, Created)
DT   03-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3203
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1677-1677 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           238..3135
FT                 /product="CR1-4_DRh_1p"
FT                 /translation="SSGPRASDSFNQRSKKLNNSFSLHYQNVRSLLGKLSK
FT                 LHVNSVSFDANVIAFTETWLNSSVSDCEIFAGSYVIYRCDRSMRLGGGVLI
FT                 AVKSDLVSQRIPIIGTDSILEFVAVRIKLHDYFVFISCSYIPPRSDISLYL
FT                 QHLAQIQSIHSTLGYNDHLIVMGDFNLPDISWMTSTDSIALVPTTAHEFVH
FT                 GLIDLSLGQLNSILNCSKKVLDLIFVSEFANAFVTRISPLSNPEDAYHPTL
FT                 EVTLEASAPLQSCSEIEPASFRCFRRAKFAELNRHLSELDWSFMDSNDDPL
FT                 HIVEQFYGILYSAFDTFVPSFPSANAPQKPPWFSRRLSFLKNSMSRLFKKF
FT                 KRTGLQVDHSMYLIARSNFLVHNSVCYNGYLNRCRIEFQDNPKQFYAFVNS
FT                 KRKSQQFPSCLHLDTTSASSDADIANLFAKFFQSTYSSFSYDNTSSYPYPF
FT                 LTPTVIFTPLISEDDVLQNLKTIKMSFSSGPDLVPSCVIKKCADALCKPLS
FT                 KLFQISLLHSFFPEVWKESFIIPLHKKGSKSDIKNYRGIAKLSAIPKFFEQ
FT                 LITAQLQHQCSSVMSPTQHGFMKRRSTTTNLLEFTSVIRSAFKNNIQTDVI
FT                 FTDFSKAFDSVNHQLLLKKLTLLGFPIMLTKWISTYLSNRTQRVAFKSTIS
FT                 NSVHVNSGVPQGSHLGPLLFGIFINDLPQVVLSSYVMMYADDVKLCLPLSN
FT                 PNSHDLLQADLNNLHSWCIQNLLFLNNSKCKLMSFYRKRLLLTSYSIGSND
FT                 LERINSVTDLGVLFNHNLNFSDHIGTIVSKAKGVFAFVKRWSKEFEDPYTT
FT                 KHLYISLVRPILEYCSCVWSPQYTNHQDLIESVQKQFLLFALRGLNWETHR
FT                 HLPSYVDRLRLLNLPSLKDRRTCHGVMFLHKLITGLVNSSYLLGQIRFSIP
FT                 VRSTRYFRPIALDICKTNFEVHDPFRVLCSQYNELYFLIYSECSVNLIVTN
FT                 ILTHLSLPPPT"
XX
SQ   Sequence 3203 BP; 857 A; 749 C; 543 G; 1054 T; 0 other;
     gctcattttt gtctctcgcc ttaatcctgg tgcttctgaa gatgacgtca aaaactacct        60
     gagcagcaaa ctgaatgttt ctcgagccga actaaccgtc ttgaagttca agtttaagca       120
     gagacgtgaa atatcttcgt ttaaaattgg acttcctgag gaacatctta ataaggctct       180
     cgatgtttct atatggccta aacatgttat tgttcacgag tatgtaaaca tgcctaatcc       240
     tcgggtccac gggcctcaga ttccttcaac caacgttcca aaaaactaaa caattctttt       300
     tccctacact accagaacgt tcgcagctta ttgggcaaac ttagtaaact gcacgtcaac       360
     agtgtctcct tcgatgccaa tgtgattgct tttaccgaaa cgtggcttaa ttcctctgtg       420
     tctgactgcg aaatatttgc tggtagttat gttatatata gatgtgaccg ctcaatgcgt       480
     cttggcggtg gtgttcttat tgccgtcaag tccgatcttg tctctcaacg tattccgata       540
     attggtacgg acagcatatt agagtttgtt gcagttcgga taaagcttca tgattatttc       600
     gtttttatat catgctcgta tattccccct cgttctgata ttagcctcta ccttcagcat       660
     ttggctcaaa tacagagtat tcattcaacc ctcggctata acgatcatct tattgtaatg       720
     ggcgacttta acctccctga catttcctgg atgacatcaa cggattctat tgctctcgtt       780
     cccaccacgg cccatgagtt tgttcacggt cttattgatc tttcattagg acaactgaac       840
     tcaatcttga actgctccaa aaaagtttta gaccttattt ttgtctcgga gttcgccaat       900
     gcattcgtta ctcgaattag ccctctctcc aatcctgaag acgcttacca tcctacactt       960
     gaggttactt tagaagcttc agctccatta cagtcatgtt ccgaaatcga accagcatct      1020
     tttcgctgtt ttcgaagagc taaattcgca gaattgaata ggcatttatc ggaactcgac      1080
     tggtctttta tggattcaaa cgatgatccc ttacatattg tagaacagtt ttatggtata      1140
     ctctactctg ctttcgatac gttcgttccc tcatttccct ctgcaaacgc gcctcaaaag      1200
     cccccttggt tctctcgtag actctctttc ctgaaaaatt ccatgtctag actttttaag      1260
     aaatttaaga gaactgggct ccaagttgac cattcgatgt atctaatagc tcgttcaaat      1320
     ttcttagtcc acaattccgt atgttacaat ggttacctaa accgttgcag aatagaattc      1380
     caagacaacc ccaagcagtt ctacgcattt gttaattcga aacgaaaatc gcaacaattt      1440
     ccatcttgcc ttcaccttga tacgacatct gcctctagtg acgccgatat tgcgaactta      1500
     tttgcaaaat ttttccagtc cacgtactcg tctttcagtt acgataacac ttcatcctac      1560
     ccctacccct tcctcactcc aactgttatt ttcacgccct taattagtga ggatgatgtc      1620
     ttacaaaatc tgaaaacaat caagatgtct ttttcttcgg gccctgacct tgtaccgagc      1680
     tgtgttataa aaaaatgtgc cgatgctttg tgcaaacctt tatctaaact ttttcagata      1740
     tccctccttc attcgttttt ccctgaagtt tggaaggaat cgtttatcat tccacttcat      1800
     aaaaagggaa gcaaatcgga cattaaaaac taccgcggta ttgcaaaact gagcgcgatc      1860
     cccaagtttt ttgaacagct tattaccgct cagctacagc accaatgcag ctcagtaatg      1920
     tccccaactc agcatggttt tatgaaacgt aggtcaacga ctacaaatct tctggaattt      1980
     acctcagtca tcagaagcgc ttttaaaaat aacattcaaa ctgatgttat ttttacggac      2040
     ttcagtaagg cttttgattc cgtgaaccat cagttattat taaaaaaact aacattacta      2100
     ggattcccga tcatgttgac taagtggatt tcaacatacc tttcgaaccg gactcagaga      2160
     gtagctttta aaagcacaat ctcaaactct gttcacgtga actctggtgt tccgcaaggg      2220
     agccacctag gacccctact gtttggaatt ttcataaatg acttgcctca agtagttctc      2280
     tcttcttatg ttatgatgta tgctgacgac gtaaaacttt gtttgccatt atcgaacccc      2340
     aattcccatg atctcttgca agccgatctg aacaaccttc attcttggtg catccagaat      2400
     ttgctgtttt taaataactc gaaatgtaaa ttgatgtcct tttatcggaa gaggcttctc      2460
     ctcacgtcat attctattgg gtcgaatgat cttgaacgca taaattccgt aacagacctt      2520
     ggagtgttat tcaaccacaa cttaaacttc tctgatcaca ttggcactat tgttagtaaa      2580
     gctaaagggg tttttgcctt tgttaaacgt tggtctaagg aatttgagga tccctatacc      2640
     acgaaacact tatatatttc cttggttcgt ccaattcttg aatactgctc gtgtgtttgg      2700
     tctcctcaat ataccaatca tcaagacctt atcgaatcgg tacagaaaca gttccttttg      2760
     tttgctttac gtggtttaaa ctgggaaaca catcgtcacc taccatctta cgtggataga      2820
     ctgcgtctac tgaacctgcc ctccctcaag gatcgtcgaa cctgtcacgg tgtcatgttc      2880
     cttcataaat taataactgg tcttgtaaat tcaagctacc tactgggtca aatacggttc      2940
     tccatccctg taaggtctac tcgttacttt cgacctattg cccttgatat ttgtaagacg      3000
     aattttgaag tacatgaccc atttcgcgtt ttatgttcgc aatataacga actgtatttt      3060
     ttgatatatt ctgaatgctc tgttaattta attgtaacaa acatcctaac tcacctgtcc      3120
     ttgccccctc ccacttgatg tgagtcgggt actatgttta tgttggcaga tatttgttaa      3180
     ctttaatgta ataaataaat aaa                                              3203
//
ID   CR1-4_DSuz  repbase;    DNA;    INV; 4498 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4498
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 602-602 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..1479
FT                 /product="CR1-4_DSuz_1p"
FT                 /translation="MSACCVVGCQFVGKITSRQPIVSCWLCENIAHAKCAD
FT                 FGHSAAQIADRTRSNANLDWTCPTCLHIKIDIRAFMRQTELEFQALRAGFT
FT                 DLLSRFNVCDSNFKGRILLSQSSLNINRSPTLPNVSLHVPDLSTNLSLPSP
FT                 TAGYVSCDEDDPNGIESSTNDPTGQSLPDSGTVVSPESLRPTNRSPAVATS
FT                 GALPHLVLPIANTLAPPPVPLTSMIPRKNTHSPALSSPVPLTVMVPRKSIF
FT                 VSRLNAAITVNDVMHHIVTNLSLPNQNGIDITKFNFKQKRDYSSFKILVPD
FT                 GLFSKLLCPNFWPADIIVHEYIKKNSSLSMTSLSAPSSDINSKN"
FT   CDS           1464..4307
FT                 /product="CR1-4_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="YKFKKLNFLIHYQNVRGLLSKLSTLYINSSVFEANVI
FT                 VLTETWLNPSVHDSEILSNNFFVYRKDRQTRRGGGVLIGVKSNLTSEFVDI
FT                 SESSGIEFISVKLSFPKRNIFLTCSYISPGSEFNVYLLHLSAIHSISLLLT
FT                 ETDQLIVLGDFNLPNISWLESKDSLAMIPRMQNDFIDGLVELSLQQVNRIP
FT                 NHIGRLLDLIFVFDSSDAEVSRISPLSLPEDCYHPTLQLCINGFFNNPRTA
FT                 INVQPSLCFKRTDYGRLVESLSTVSWSFLVDLPVDDAVRHFYEILYRLFEE
FT                 HVPLSSMKNSYSSPWFTRQLSYLKNKKTRLFKRFKISGLQTDFTKYSSAKV
FT                 EFVQYNTDCYKNYLSRCKRDFKSNPKLFFSFVNSKRKSSCFPPSLVLNNKV
FT                 ASDDNDICNLFADFFQSTYTKCNNVIIKDYPYPLPHLNSIFKPVIDVSDVL
FT                 QSLNTLKLSFLPGPDRIPSCILRNCSSYLALPLTLIFNLSLSQCRFPSIWK
FT                 ESFIIPLFKKGNKSDISNYRGIAKLSSIPKLFEKIITCQLQHHCRSIISPC
FT                 QHGFTRCRSTSTNLLEFTSLITRGFLTHHQTDVIYTDFSKAFDSVNHRILI
FT                 YKLSLLGFPPNLLEWILSYLSNRTQMVCFNNKISKIINVTSGVPQGSHLGP
FT                 LLFGLMINDLPYVIKSSTVLMYADDVKLCLSMCLPNSYNDLQLDLDCLYTW
FT                 CMINKLNLNYSKCNFMTFYRSSPSLYSYCIGNNALERIFSVQDLGVLFDHK
FT                 LSFKDHISTITNKARSLLAFMKRWSREFDDPYTTKLLYVSLVRPSMEYCSC
FT                 IWSPQISCYQNMLESVQKQFLLFALRGLSWDTGSRLPSYHARLRLLDLPTL
FT                 NHRRKCHGVMFLHKLINGDVDSPFLLSSLNWNVPCRTVRRFRPLSLPICRS
FT                 NYALHDPFRVLCDDYNALCHVLLFDSPNATNYDKLMYFLSSNNL"
XX
SQ   Sequence 4498 BP; 1164 A; 974 C; 770 G; 1590 T; 0 other;
     aattcgaatt cggtctctgt tgtacacgga cgcgttttat atttgctcct acatttattc        60
     gcctagtgtc taaattaccg atctgatata ttcccaaagt ttcattttca actcggttga       120
     gaccgccgtt tgcatgcaat ttagttattt gtgttaaaac cattatctgt attattatat       180
     tggataatag ttaaagacgc gggtgctttg tgcattgttg ttgtttctta tttacattgt       240
     tgttttggcg ctctctcgca ccgttcgctc tgctacattc tcccaacttc agtcaccggc       300
     tctcattttc gagttaacgg gtctttgctg aattggtctt accgctctct tttcttatct       360
     ttcctctgcg ttttgcaaag ccacacagct gtttgttggc actcatctaa agcttcctac       420
     tttttctact ttttctacat tctacattta actgacctca acttgtaaac aatgtctgcc       480
     tgctgtgttg ttggttgcca atttgttggt aaaatcactt ctcggcagcc aattgttagt       540
     tgctggttat gtgagaacat tgcgcacgca aaatgtgcag actttgggca tagtgctgcc       600
     caaattgctg atcgcactag atctaatgct aacctggact ggacgtgccc tacatgccta       660
     catatcaaaa tcgatataag agcatttatg aggcaaacgg agctggagtt ccaggcatta       720
     cgtgctggat ttacggactt attaagtcga tttaatgttt gcgactcgaa ctttaaaggt       780
     cggattcttc taagtcaatc ttcattaaat ataaatcgta gtcctacact gcctaatgtt       840
     tctttacacg ttccagatct ctcgaccaac ctctctcttc ccagccccac tgcaggctat       900
     gtgtcgtgcg acgaggatga tcccaatggg atcgagtcat caacgaatga ccccacgggg       960
     caatcgctgc cagattcagg gactgtagtt tcgcctgagt cattaaggcc tactaaccgt      1020
     tcaccggctg ttgccacttc cggggctctg ccgcaccttg tacttcctat agctaatacc      1080
     ctcgcacctc ctcctgtccc acttactagc atgatcccta ggaaaaacac gcatagccct      1140
     gctctctctt ctccggtacc actcactgtc atggtaccta ggaaatctat ttttgtgtct      1200
     aggttgaatg cagcaataac agtaaatgac gttatgcatc atattgtcac aaacctctcc      1260
     cttcccaatc aaaatggtat tgacatcacc aaatttaatt ttaaacagaa aagagattac      1320
     tcttcattta aaatacttgt tccggacggg ctgttctcta aacttctttg ccccaatttt      1380
     tggcctgctg atataattgt ccacgagtat ataaaaaaaa atagctccct ttccatgact      1440
     tctttgtcgg cgcccagctc tgatataaat tcaaaaaact aaatttccta attcactatc      1500
     agaatgttcg ggggcttctt agtaaactct ctacgcttta tataaatagt tcagtttttg      1560
     aggccaatgt tattgtactc actgagacct ggcttaaccc atccgtacac gatagtgaga      1620
     ttttgtctaa taactttttt gtttatcgga aggatcgtca gacccgtcga ggaggaggcg      1680
     ttcttattgg agtcaaatcc aatttaactt ctgagtttgt tgatatttct gaatcatcag      1740
     gtattgaatt tatttccgta aaattatctt tcccaaaaag aaacattttt ttaacctgct      1800
     cgtatatatc tcccggctct gaatttaacg tgtatctact gcacctgtcc gccatacatt      1860
     ctatctcctt gttgcttact gaaactgacc aacttattgt gcttggtgac tttaatcttc      1920
     ccaatatctc ttggttggag agtaaggact cattggcaat gattcctagg atgcaaaatg      1980
     attttattga tggtcttgtt gaactatctt tgcagcaagt taacaggatt cccaatcata      2040
     ttggtcgtct tcttgactta atctttgttt ttgatagtag cgatgctgaa gtcagtcgta      2100
     tttcgccact atctttacct gaagattgtt atcatcctac ccttcagctc tgtattaatg      2160
     gattttttaa taatcctagg actgcaataa atgtacagcc tagtttgtgt tttaagagga      2220
     ctgattacgg cagactagtg gaatctttat cgacagtaag ctggtccttt ctagttgacc      2280
     ttcctgttga tgatgcagtt aggcactttt atgagatcct ttaccgtcta tttgaagaac      2340
     atgtccctct ttcctccatg aagaattctt acagctctcc atggtttacc cgtcaactat      2400
     cttatctgaa gaataaaaaa acaagactat ttaaacgttt caaaatatcc ggcttacaga      2460
     cagacttcac caaatatagc tcagctaagg tggaatttgt ccagtacaat actgattgtt      2520
     acaaaaatta cctgtctcgt tgtaagcggg atttcaaaag caatcctaag cttttctttt      2580
     ctttcgtcaa ttctaaacga aaatctagct gcttccctcc ctctctcgtt ctcaataata      2640
     aggtagcatc tgatgataat gatatttgca acttattcgc agactttttt caatccactt      2700
     atacgaaatg caataatgtc attatcaaag attatccata cccgctacct catttgaact      2760
     ctatcttcaa accagtgatt gatgtatctg atgttcttca gagtcttaat actctcaagc      2820
     tctcattttt accgggtcct gatagaatac caagttgtat acttaggaat tgttcatctt      2880
     atcttgctct tcccttaaca ttgatattta atctgtccct aagtcaatgt agatttccat      2940
     ccatatggaa ggaatccttt attatcccat tgtttaaaaa agggaacaag tctgatatct      3000
     caaactatcg cggtattgct aaactcagtt ctattcctaa actttttgaa aaaattatta      3060
     cctgtcagtt gcagcatcat tgcaggtcta ttatttcacc ttgtcagcat ggcttcacta      3120
     gatgtcgctc tacttctaca aacctacttg aatttacgtc tttaatcact agaggttttc      3180
     tgacacatca tcaaactgat gtgatttata ccgatttctc taaagctttt gattcagtga      3240
     accataggat tcttatttat aaattgtccc ttttaggttt tccacccaac ctactagagt      3300
     ggatactttc ctacctttct aatagaactc aaatggtctg ttttaataat aaaatttcca      3360
     aaataattaa tgttacttct ggagtgccac agggtagcca cctgggacct ttactttttg      3420
     gcttaatgat taatgatcta ccttatgtta taaaatcgtc aactgtttta atgtatgcag      3480
     atgatgtcaa gctatgtttg tccatgtgtt tacctaattc atataatgac cttcaattag      3540
     atcttgattg tttgtatacg tggtgcatga ttaacaagtt gaatttgaac tattctaaat      3600
     gtaactttat gaccttttat cgtagtagtc catctctgta ttcttattgt atcggtaata      3660
     acgcccttga acgtattttt tctgttcagg atcttggcgt tctatttgat cataaactta      3720
     gttttaaaga ccatatatct actataacta acaaagccag aagtctcctg gcgtttatga      3780
     agcgctggtc aagggagttt gatgatccat acacaacaaa gcttttgtat gtttctcttg      3840
     ttcgtccctc aatggaatat tgctcgtgta tatggtcacc tcaaattagc tgttaccaaa      3900
     atatgttaga gtccgttcaa aaacaattcc ttttatttgc tttgagaggt ttaagctggg      3960
     acacaggaag tcgattgccc tcttatcatg cgaggttgcg cctgctggac ttaccaaccc      4020
     tgaaccatcg tagaaagtgt catggagtta tgtttttgca taaattaatt aatggtgatg      4080
     ttgactctcc cttccttctt agttccctca actggaatgt accctgtaga acagttcgtc      4140
     gttttcgtcc gttgtccctg ccaatttgta gatccaatta tgcccttcat gatccttttc      4200
     gggttctttg tgacgactat aatgcactgt gtcacgtctt actgtttgat agccctaatg      4260
     caactaatta tgataaactt atgtattttc tatcttccaa taatttgtaa atttctatgt      4320
     tactagccat tctatgtgag catgtatttt aaactgtcta tttttatgtc gtctttttcc      4380
     atgtccgcga tttcgtttac ttgcccaaat cggtttaggg ctccgcgcgt aacaagcatt      4440
     gcttggtgtc gtaagggcca cttgtttgta ctgaccatag tgcatcaacg tccaagaa        4498
//
ID   CR1-4_DT    repbase;    DNA;    INV; 4443 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4443
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1695-1695 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~90% identical to CR1-1_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..963
FT                 /product="CR1-4_DT_1p"
FT                 /translation="MAVCCSKKCKSLILAGQQSIPCHSCDSIFHAKCLGYS
FT                 GLVRDAIDMRSGLRYYCEECIAYETQAISIRRLTKSTVTELIRNSRRNTEL
FT                 LVALESQLTSRMLSEPDSPKRKKIAVDRQPTGDASETLSGDPGSAAQQSIS
FT                 AAAQMVLRSKAKKDSVSECKDREILPHETPEKSV"
FT   CDS           1379..4249
FT                 /product="CR1-4_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RAIHIFICICLKKLDSFLLLSYQNTRGLQSKLTKLYT
FT                 DSFSLSSHVIVFTETWLKPEILSSEVFPSKFTTYRLDRPSRRGGGVLIAVD
FT                 SELTSEEITSDEIMDIEFLCIKLSLPGISIYITCSYIPPSSEFPIYANHLS
FT                 AIQFISSKLSDRDQLIVLGDFNIPRATWSTVETSNILLPSTQHDFLDGLLD
FT                 ISLSQVNHVQNSLGRLLDLCFVSSPDCVCIVKTSAITLPEDPYHPTLELTV
FT                 DTGTKLIEICEKSAKRIPCFRRANFALINSLIACSDWSNLYLCTNMTEAVN
FT                 IFYNVLNAVFDTCVPTYYPKISSQPPWFSKELSRLKNVKSRLYKKFRASGS
FT                 QAAFSRYLSARSDFTVLNAQCYKNYLARCKTQFTLDPKQFYNFVNTKRKSS
FT                 SYPSTLKFENSAANTDQAIADLFAQFFQTTYSTTSPSDQSYPYDMPKSNFI
FT                 FCPVISESSLLLDLQRVKPVYSPGPDGVPGCVLKYCAETLCRPLHKLFTLS
FT                 LETSDFPHRWKESFVIPLHKKGSKLNACNYRGISKLSAIPKLFENIITPHL
FT                 QHSCRSLISSCQHGFIKRRSTTTNLLEFTSFVLNGFRKNRQTDVVYTDFSK
FT                 AFDSVNHPILVRKLDLLGFPDDLLRWILSYLNGRTQRVIFKNSLSSLIRVT
FT                 SGVPQGSHLGPLLFTLFINDLPLVLTNSRVLMYADDVKLCLQFNDPAQSLA
FT                 LQSDLNAFQTWCMNNDLNLNGSKCKLMTFFRVSPHYSTYTLSGCGLDRITH
FT                 ADDLGVYMDPKLKFSDHITTMVNKARGVLAFIKRWSKEFDDPYVTKTLFIS
FT                 LVRPILEYCAPVWSPQYGVHIDRIESVQKNFLIFALRGLNWDTSLILPSYS
FT                 SRLLLINLPSLVNRRTMLGITFIRNLIHGDVESPELLGRLHFNVPNRFTRN
FT                 YIPLVLNHCISNYAMHEPFRVLCNDYNRLYHLISTTDSLPIFKSIILSYLA
FT                 TN"
XX
SQ   Sequence 4443 BP; 1221 A; 947 C; 836 G; 1438 T; 1 other;
     ctttcgctct ttcagtgaac ggtcgtgttt ttgtcttgcg ctccgaattt ttgttctttt        60
     tgtccataaa ccatcggggt ttaattcgaa ttttctaaca tttatatagc tttttatgtc       120
     actaacaaca tccgttcgct tcgcgagtgc atagtgattg ttttgtgttt aaattaacta       180
     aattagtttg cacgcccagt ctctgtgcag tgtttgttgt tattgtttta tcttattgca       240
     ttctcctttt ctaccaaacg ctgtttggag cggtaagaat ctatacggta gttacccgct       300
     ctcccgcact cccgcataaa acgttgttgt tggcacagct waaacttacg ctcccccgct       360
     tactcactcc cgctcactct ctcccgctct ctcttactct cgtagctttt ttctctttgc       420
     accgtggttc ggaatatagc gataatggct gtctgttgtt cgaagaaatg caagtcgttg       480
     attttggctg gacaacagag cattccgtgc cattcgtgcg atagtatttt tcatgcaaaa       540
     tgtcttggct attcgggcct ggttcgcgat gcaatcgaca tgagaagtgg cttgcgctac       600
     tattgtgaag aatgtatcgc gtatgaaacc caggcaatct ctataagacg gctcacaaaa       660
     agcactgtga cggaattaat tcgtaacagc cgtagaaata cggagctgct tgtggcgctt       720
     gagtcgcagc tcactagccg tatgctatct gagcccgatt ctcctaagcg taaaaagatc       780
     gcggtcgata gacaacccac gggagacgct agtgaaactc tctctggcga tccggggtct       840
     gcagcacagc agtcgatctc agctgccgca caaatggtac tgaggtcgaa agctaaaaaa       900
     gattcggtat ccgaatgtaa agatcgtgag attttgccgc atgagacacc cgaaaaatct       960
     gtttaaaaaa atacagaaat gattccaacg ccgcatgttg acttaacgtc tggagtaccg      1020
     actggaactg ttagtgcagc cataaatgct gtagtaccaa aacctgtcac atgcgtggta      1080
     cctaaaacag tcacctgtgt accgcagcgg aaacaaattt ttgtttctcg gctgaatcct      1140
     gacctttcat ccctggacat tacggcctat atccgtaaca aagttcagat tgatgatcta      1200
     aaggttgaac gatttaattt tccatatgct agggaagtat catcatttaa gatcggtgtt      1260
     ccctgtgctc attttgcaac gatgtgctca cccaattttt ggcctgcagg catttttgtt      1320
     aaagagtacg aagctagaaa aagaaaattc gttcaaagga agttggaaat ccctttaaag      1380
     agccatccac atcttcatct gtatctgtct caaaaaacta gattctttcc ttctgctttc      1440
     ctatcagaat acaagaggtt tacaaagtaa gttgaccaaa ttgtatactg atagtttttc      1500
     cttgtcttcc catgttattg tgttcacaga aacttggtta aaaccggaaa ttcttagttc      1560
     cgaagtcttt ccaagtaagt tcacaacgta caggcttgat cgtccctccc gacgtggagg      1620
     tggagtttta attgcagtcg actcagaatt aacgtctgaa gaaataacgt ccgacgaaat      1680
     aatggacatt gaatttctgt gtataaaact atcccttccg ggtatttcta tatacataac      1740
     atgttcttat attccgccgt catctgaatt cccaatatat gcaaatcatc tgtccgctat      1800
     ccagtttatt tcaagtaaac tatcagatag ggatcagtta atagttttag gtgactttaa      1860
     tatacctaga gcgacatggt ccaccgtcga aacctcgaat atattgttac cttcaacgca      1920
     gcatgatttt cttgatggtt tgcttgatat ttcattgtct caagtaaacc atgttcaaaa      1980
     ttcgttagga cgattactgg atctatgctt tgtttcaagt ccagattgtg tctgcatagt      2040
     taaaacctct gcaattactt taccagaaga cccatatcac ccaacgctgg agctgactgt      2100
     tgacacgggt acaaaattaa ttgaaatatg tgaaaagtca gctaaacgca tcccctgctt      2160
     tcgtagagca aactttgcac ttatcaatag ccttatcgct tgctcggatt ggtctaatct      2220
     gtacttatgt actaatatga ctgaagctgt taatatattt tataatgtat taaacgcagt      2280
     ttttgataca tgcgtaccta cgtattatcc taaaatttct agccaacctc cgtggtttag      2340
     taaagagttg tcacgactta aaaatgtgaa gtctagactc tacaaaaagt ttagagcttc      2400
     cggatcacaa gctgcctttt cccgatactt aagtgctcgg tcggatttta ccgtgcttaa      2460
     cgctcagtgt tacaaaaact atttagctcg ttgtaagacg cagtttacac tggatccaaa      2520
     acagttttat aattttgtta acacaaagcg taaatcttca agttacccat caacccttaa      2580
     atttgaaaat tctgccgcaa acactgatca ggccatagcc gatctttttg cacagttttt      2640
     ccaaaccacc tattcaacaa caagtccgtc agatcagtct tacccatatg acatgcctaa      2700
     atcaaacttt attttttgtc cagttataag tgaaagctca cttcttttag atttgcaaag      2760
     ggtcaaacca gtctactctc cgggtcctga cggagtccct ggatgtgtgc tcaagtattg      2820
     cgctgagact ttgtgtagac cattgcacaa actttttact ttgtctttag aaacgtcaga      2880
     tttcccgcat agatggaagg aatcgtttgt tatcccgctt cataaaaagg ggagcaaatt      2940
     gaacgcatgt aattacagag gtatttcaaa gctatcagct attccgaagc tcttcgagaa      3000
     cattattact ccccatttgc aacacagttg taggtctctt atttcctctt gtcagcacgg      3060
     atttataaaa cgtaggtcaa cgacaaccaa ccttttggag tttacttcat ttgtgttaaa      3120
     tggttttaga aaaaatcgtc agactgatgt ggtttacact gatttcagta aggcgtttga      3180
     ctctgtaaac catccgattt tagttcggaa attggacctt ttggggtttc ctgatgatct      3240
     tcttaggtgg atcttaagtt atttgaatgg caggactcaa agggtcattt ttaaaaactc      3300
     tttatcatcc ctaatccgag ttacgtccgg tgtaccacaa ggaagtcatc ttggtccgct      3360
     cctgtttaca ttatttataa atgaccttcc tctagtccta acgaactcac gtgtacttat      3420
     gtacgcagat gacgttaagt tgtgcctgca atttaatgat cccgcacaaa gtttagcttt      3480
     acaatctgat ctcaatgcat ttcaaacatg gtgcatgaat aatgatttaa atttaaatgg      3540
     ttctaagtgt aaactaatga cctttttccg tgtcagccct cactattcaa cttatacttt      3600
     aagcggttgt gggttagata gaataacgca tgctgacgac cttggagtct atatggatcc      3660
     taaacttaaa ttttctgatc acattactac catggtaaat aaagccaggg gtgtgcttgc      3720
     atttatcaaa aggtggtcga aggaattcga tgatccctat gttactaaga ccttgtttat      3780
     ttcattagtc cgaccaattc ttgagtactg cgctccagtt tggagtcccc aatatggggt      3840
     gcatatagac cggattgagt ctgtgcaaaa aaacttttta atatttgcct tacggggact      3900
     taactgggat acaagcctaa tactgccatc ctactctagt agactacttc taattaactt      3960
     accatcatta gttaatcgaa gaactatgct tggtattacg tttattagga atcttattca      4020
     tggtgatgtg gagagtcccg agttactggg tcgcctgcat tttaatgtgc caaatagatt      4080
     cacaagaaac tatattcctc tagttttaaa tcattgtatc tctaattacg caatgcatga      4140
     accttttaga gtactctgca atgactataa tagactatat cacctaatat ctactaccga      4200
     ctcactgcct atctttaaat caataatact atcctactta gcaactaatt agttttactt      4260
     tatgtatctt gactattcgt attttgacct gcatgtattt ttaattgtct attgtgaaat      4320
     tgtcttcttt gtccgcgatt tcgtttactc gcccaaaacg gtgtagggcc ccgcgcgtaa      4380
     caagcattgc ttggtgtcgt aagggccact tgattgtact gaccatagtg catcaacgtc      4440
     caa                                                                    4443
//
ID   CR1-4_DWi   repbase;    DNA;    INV; 4647 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   21-JAN-2022 (Rel. 27.01, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_DWi.
XX
NM   CR1-4_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4647
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1958-1958 (2012).
XX
RN   [3]
RP   1-4647
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JAN-2022).
XX
DR   [3] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           604..1548
FT                 /product="CR1-4_DWi_1p"
FT                 /translation="MPVCSVKNCLQPAPPLNSFIYCWLCKTTVHVKCAGFT
FT                 CRVKDLLDQKKGLKWGCESCRIVEDEMELFMRQTKDNLMSLSASFLKLSQE
FT                 FKAVESQFSSLTLLTESRKRKKAGEQTSDLSLCLPVSTSISVPTPSQPMQT
FT                 PIPXTMSVVSVLSGQESTPMDFADRDSSDSSAGMPLVATDATINAVADAIP
FT                 AMPKPLVGVPPKKHIFVSRLLPDATSDDVMAHIRAKLNVSNISIEKFKFSY
FT                 SREISSFKISVPIEFFDCICSSSFWPKSLIVKEFTSRKKKTRGQTRIPSPS
FT                 IPLSSSSIPTPSLSIPSSTLSKN"
FT   CDS           1395..4394
FT                 /product="CR1-4_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LLAEKLNCEGVYIQKKEDTGPNKDSFTIYSSFFLIYS
FT                 HSFLIYSFFYSIKKLTTSFSVGYQNVRGLNTKLTKLFVDSLSFDFDLIVFT
FT                 ETWLKPDVFDATVLPSNFNIFRRDRTDRRGGGVLIAVDSALSSGLITIPVS
FT                 STIEFICVKVSFSRFSIFVTCSYIPPQSEWPTYLLHLDSIKFIVELLSDRD
FT                 LLIVLGDFNLPTMTWSTVNGSKTLLPSGCHDFIDGLLELSLAQLNSISNTS
FT                 GRFLDLIFTSDPSFCEVSRTSPMVLPEDSYHPTLELSIEFPSREPISECDP
FT                 TVSTRCFRKTDFVALNNAFLNTDWTNLYTCTDMNSAISLFYTTVDSIFNDC
FT                 VPLVSPVVTQKSPWFTRGLSKLKNLKSRYYKKYKVTGLSSDLSRYLVAKSN
FT                 FIVSNSKCYNNYLQRCKLQFSENPKEFYSFVNSKRNSVSLPSFAVFNNDSA
FT                 SSDQSISNLFANFFSTTYISTKYNSSQIYPYPITKSNCILNPIITQSSVAK
FT                 ELMTIKPVYSPGPDGIPACVLRFCAESLCSPLLKLFELSVTLSEFPTIWKD
FT                 SFILPLHKCGNKSDVTNYRGISKLSAIPKLFEKIMTSQIQHXCKSIFSPYQ
FT                 HGFVKNRSTTTNLLQFTSFVIQGFKKQKQTDVIYTDFSKAFDSVNHALLLH
FT                 KLNLVGFPDALLAWILQYLSNRRQRVLFRSSLSKIICVESGVPQGSHLGPL
FT                 LFTIFINDLPTVLLNSRVLMYADDVKIANRIVDSLSCHTLQADLNAFQGWC
FT                 RTNLLSLNCSKCKVMSFYRGSPQLTSYFLNNFPLEKINNTSLVVKDLGILI
FT                 DHKLSFNQHISTTVSRAKSVLGFMKRWSKEFKDPYITKILFTSLVRPILEY
FT                 GSCVWSPQYEFYQNKLESVQKQFLLFALRDLRWDPTVQLPSYSSRLQLINL
FT                 PSLTNRRTMLGVTFLYKLLNGEIDSSELLSQINISVPSRRTRNFTPLILPT
FT                 CTTNYSLHEPFRILCSDYNRLWHVIGSETSLPGIKTAILSFLARN"
XX
SQ   Sequence 4647 BP; 1188 A; 964 C; 814 G; 1679 T; 2 other;
     atcaacgctc tcgaggaaga cggacgtgtt ttttttaagc tcccgcgttt taactgattt        60
     tataattttt ttttattttg tgttatcggc atcgcgatcg aaaattataa ttataatatt       120
     aaatctaact tgcaccatat cactcgtttg cgtttttgtg tgtttgtgtt aataattttt       180
     aacaacctta attctgttaa aacctttgtt ggtttttttc ttttctttct ctctttccca       240
     cctttttttc tttcttgtaa atcacaagca acgctcattt gttgttgtct tgaaatttct       300
     gtgagttctt gttgcagtgt ttttgttttt gtgatttcta gctcccgcgc tcgcgctctt       360
     taactttttt ttttttctct ctcgttttcg tttcacttgt cgccgttatt tgcgctcata       420
     ctgcagtctg ttgtgtgtct gtaatttaga ctctatagtg ctctctttat cttttaaccc       480
     ttgtgcaccc ccaatatctc gctttcttat tatttctgga cctcagagtg agttatatat       540
     tttaatacca atacatatct catttttatt tgtttggtta ctaattcatc taattaactc       600
     ataatgcctg tctgttcggt taaaaattgt ttgcagcccg ccccacccct gaatagtttt       660
     atttactgtt ggttgtgtaa aactacagta catgttaagt gcgccggctt tacatgcagg       720
     gtaaaggatc ttttagatca aaaaaagggt ctcaaatggg gatgtgagtc atgccgtatc       780
     gtggaagatg aaatggaact tttcatgcgg caaacaaagg ataacctgat gagtctgtcc       840
     gccagttttc ttaaactctc gcaagagttt aaagctgtcg agtctcagtt tagtagttta       900
     acgctactga ctgagtctcg aaagcgtaag aaggcaggag aacagacttc tgatttgtcc       960
     ttgtgtttgc cggtctccac atctatatcg gttccgacgc cttctcaacc aatgcaaact      1020
     ccaattccgs agacgatgtc tgtagtgtcc gttttgtctg ggcaagaatc tacacccatg      1080
     gattttgccg atagggattc tagtgatagt agtgccggaa tgccacttgt tgcaactgat      1140
     gctacaatta atgcggtagc tgatgcaata cctgcaatgc cgaaaccatt ggtgggagtg      1200
     ccacctaaaa aacacatttt tgtttcgaga cttctccctg atgctacatc ggatgatgtc      1260
     atggcccaca ttcgggctaa actgaatgtc tccaatatat caatagaaaa gttcaaattt      1320
     tcatattcta gagaaatttc atcttttaaa atcagtgttc caattgagtt ctttgactgt      1380
     atctgcagtt ctagcttctg gccgaaaagc ttaattgtga aggagtttac atccagaaaa      1440
     aagaagacac ggggccaaac aaggattcct tcaccatcta ttcctctttc ttcctcatct      1500
     attcccactc cttccttatc tattccttct tctactctat caaaaaacta acaacttcct      1560
     tctctgtcgg ctatcagaat gtcagaggcc ttaatactaa acttactaaa ctctttgtag      1620
     atagtctgtc ttttgatttt gacctaattg tctttactga gacttggtta aaacctgacg      1680
     tttttgacgc cacagttcta ccctctaatt tcaatatttt tagacgtgat cgtactgatc      1740
     gtaggggtgg tggagttctt attgctgtag attccgccct atcatcgggt ctgataacaa      1800
     tacctgtctc aagtactatc gaatttatat gcgttaaggt atcttttagt cgtttttcca      1860
     tttttgttac ctgttcttac attccgcccc aatcggaatg gccaacctat ttactacact      1920
     tagattctat taaatttata gttgaactac tttctgacag agacttatta attgtcctag      1980
     gggactttaa cctgcccact atgacttggt caacagttaa tggtagcaaa acgttgctgc      2040
     cctctgggtg tcatgatttt attgatggtc tgcttgagct ttcgttggcc cagctgaatt      2100
     cgatttctaa tacgtctggc agatttctgg atctgatttt tacttctgat cctagctttt      2160
     gtgaagtatc tagaactagt ccaatggtgt taccagagga tagttatcat ccaactttag      2220
     agttatctat tgagtttccc agccgcgagc ccatctccga gtgtgatcct acggtaagca      2280
     cccgatgttt tcggaagact gactttgtcg cactaaacaa tgcctttctt aataccgatt      2340
     ggactaattt atacacttgt acggatatga attccgccat ttctttattt tataccactg      2400
     ttgactcgat ctttaatgac tgtgtacccc tagtgtctcc tgtggtgacg caaaaatcac      2460
     catggtttac gcgggggctg tcaaaactga agaatcttaa gtctaggtat tacaaaaaat      2520
     ataaagtcac gggtctatca tcggatctgt ctcgttactt ggttgctaaa tcgaatttta      2580
     ttgtttctaa ttctaaatgc tataataatt acttacaacg ttgcaagttg caattctccg      2640
     aaaatcctaa agagttctat agtttcgtta actcaaagcg aaattctgtc tcccttccat      2700
     cgtttgcagt ttttaataat gattcggcct cttctgatca atctatttct aatttatttg      2760
     ctaacttctt ctcgactacg tacatatcta ctaagtacaa ctctagccag atatatccat      2820
     atcctataac gaaatccaac tgtattctta atcctattat aacgcaaagt tcggtagcta      2880
     aggaactaat gacgattaag ccggtatact caccgggccc agacggtatt cccgcttgtg      2940
     tcctgaggtt ctgtgcggag tcattgtgct cgcctttact taagcttttt gagttgtccg      3000
     ttacactgtc cgagtttcca actatatgga aggattcgtt cattttacct cttcacaaat      3060
     gtggcaataa atccgacgtc actaattaca gaggaatttc taaattgtca gcgataccta      3120
     aactgtttga gaaaattatg acgtctcaaa tacagcattt mtgtaaatct attttttcgc      3180
     cataccagca tgggtttgtc aagaataggt ctaccacaac taacctttta cagtttacat      3240
     cttttgtaat ccaaggtttt aagaaacaaa agcaaactga tgttatatat acggatttca      3300
     gtaaggcttt cgattcggta aaccatgcct tactattaca taagctgaat ttagttggct      3360
     ttccggatgc tctgcttgct tggattttac aatatctaag caataggagg cagagggttc      3420
     tttttaggtc ctctctttct aagatcattt gtgttgaatc gggagtccca cagggcagtc      3480
     accttggccc attattattt accattttta ttaatgatct ccccaccgtt cttttaaatt      3540
     ccagagttct tatgtatgcc gatgatgtaa aaatcgctaa tcgcatcgta gactctctct      3600
     catgtcatac cttgcaagct gacctgaatg cttttcaggg gtggtgtagg actaacttgt      3660
     tatctctaaa ctgttctaag tgcaaagtta tgtcttttta tagaggttct ccccaattaa      3720
     cgagttactt tttaaataat ttcccgttag aaaaaattaa taatacttcc ttggttgtaa      3780
     aagatttggg gatcttaatc gaccacaaac ttagttttaa tcagcatata tcgactactg      3840
     ttagtagggc taagagtgtt cttggcttta tgaagcgctg gtcgaaggag ttcaaggatc      3900
     catatattac caaaatactt tttacttctt tagtccgccc catattagaa tatggatctt      3960
     gtgtttggtc tcctcaatat gagttttatc aaaacaaatt agaatctgta caaaaacagt      4020
     ttttactctt tgcccttcgt gatttgcgct gggatccaac tgtacaactt ccatcttatt      4080
     ctagtcgact tcagttaatt aaccttcctt ctttaactaa tcgtagaaca atgcttggtg      4140
     taacttttct ttacaaactt ttgaatggtg agattgactc ttccgagctg ttgagccaaa      4200
     ttaacatttc tgttccatct agaaggaccc gcaatttcac accgcttata cttcccactt      4260
     gcacaactaa ctattctctg catgaacctt ttcgtatact atgtagtgac tacaacagac      4320
     tttggcacgt tatcggttcc gaaacatcgc ttccgggtat taaaactgcg atcttgtcat      4380
     tcctcgctcg taattagttg taatcatctt tatttatacc tatcctgttt tctttttata      4440
     tgtaacctat tatctcatta catttaatat tttctatttc tttagtttaa tttatgttta      4500
     tatatgtaat acgcctatgc ccttaggtcg gagtgggtag aggttgtaac attaacttta      4560
     cttagggtca ttcgtaacag gcccgggcct ggtgtcatat gggccacttg ttcgtactga      4620
     gcgttgtacg actacgtcta tattata                                          4647
//
ID   CR1-4_Hmel  repbase;    DNA;    INV; 3113 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3113
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           632..2863
FT                 /product="CR1-4_Hmel_1p"
FT                 /translation="VLXNALILYEMLXLHHPPLEMLISISPAHYSPHVKIQ
FT                 KNNYFKGDYNKITKALSEISWEGELLKYDNVNDMISRFYQILYEIIHLYVP
FT                 KSNKHNNYHPVWFNSYLIYLLKQKKKFHTRYKIYNNPLDLIEFQYLRDNCE
FT                 ILITTCXDKYIHTLENQIGTDSKYFWTHIXNKRRNXSRYPSSMYLGNKHSN
FT                 DLRESCNLFSEHFSCVFNPIVDICGDNLDSHQQLSEVPNIYISQETIINKI
FT                 KRLDLKQSSGPDNIPPVFLFNCVXLISFPLHLIYNASLVQGRFPDIWKEAR
FT                 IVPIFKDGKKELISNYRPISILSTMSKVFESIVHPFIFHHVKNLLHPRQYG
FT                 FXPKKSTNSNLLNYVSYLIDSVDKNLQVDVIYTDFSKAFDKVDHGILVRKL
FT                 LSFGISGILLDWCKSYLSNRNSRVVIHGESSESFSATSGVPQGSNLGPLFF
FT                 VLFINDIADIFENCQFYLFADDLKIAKIITQESDVVALQGNLDRLVEWCDL
FT                 NRMVLNPSKCSFIRFSRKKRPIMSYYHISGKNLNVTDSVRDLGVIFDSKLR
FT                 FEEHVNTVVKASLKLLGFIFRQSRDFKNPATILRLYNSLIRSKLEYCCQVW
FT                 SPAYRKYSDRLESVQKRFIKYLVYRFNTLSHSERYEDIIGSFKLQLLSNRR
FT                 DLVDMKFLXNLFKGKIDDSELLSRFNIKIPQRTPRNPCLFFKTERTRTNLG
FT                 QNSPINRISRSFNEYLKEDVTLDIGCDGLSVFLRKCNHILNKVN"
XX
SQ   Sequence 3113 BP; 1055 A; 503 C; 507 G; 1037 T; 11 other;
     aatatttctt gttattatca gaacgtccga ggtctaagat catacgtaag agatattgca        60
     ctcaaaattc agaatagttc ttttgatatc ataattctta ccgaaacgtg gttaaattgt       120
     actatttatg actcggaaat ttttgatagt agatatactg tgtacagaag ggatcgcatt       180
     aacaaaacac ttggtggcgg tgttcttatc gccgtttcaa ataactatac ttcatctaga       240
     gtattcagct gcaactcaga atgcgaagat ctttgggtaa aaataaaaat atctagtgag       300
     aaagaacatg gttttatcaa aatctgtgcg gtttacctac caccgcctct taatcttaac       360
     ttgttaggga aatttattga gagcacaaat cgagtgatgg atgagtgtat cactaaatac       420
     acacttatag caggtgattt taatatgtca aatgttgttt gggaacttca tagccccagc       480
     tcatatctcc tgcccttaat taacagcaac agttctattc acagtttact gtcagacttt       540
     atggaattat ataattttaa gcaattcaat hatgtcaaaa ataataatga taaaattcta       600
     gacttagtgg tttgtaactc tgaaatagta agtattaada aatgcactaa tcctatacga       660
     aatgttgamc cttcaccatc caccattaga aatgttaatc tcaatttccc ctgcccacta       720
     ttcgcctcat gtaaaaatac aaaaaaataa ctattttaag ggtgattata ataaaataac       780
     taaagccctg agcgagattt cgtgggaagg tgaactccta aaatatgata atgtgaacga       840
     catgattagc agattctatc aaattcttta tgaaataata catctttatg tacctaagag       900
     taataagcac aacaattatc atccagtttg gtttaactcc tatcttatat atttattgaa       960
     gcaaaaaaag aagtttcata ctagatacaa gatttataat aatcccctag acctaatcga      1020
     atttcaatat ctccgagata actgtgaaat actgataaca acgtgtdatg acaaatatat      1080
     acatactctg gaaaatcaaa ttggtactga ttctaaatat ttttggactc acattdctaa      1140
     taaacgtcgw aacycctcta ggtacccatc atctatgtat ttgggtaata agcattcgaa      1200
     tgacctgaga gaatcttgta atctattttc tgagcacttt tcctgtgttt ttaatcctat      1260
     agttgacata tgtggtgata atcttgattc acatcagcag ttatctgaag tgcctaatat      1320
     atacatatcc caggaaacca taataaataa aataaaaaga cttgatttaa aacagagttc      1380
     tggacctgac aatatacccc ctgtatttct atttaattgc gttgabttaa tatcatttcc      1440
     attgcattta atttataatg cttcacttgt gcagggacgg tttccagata tatggaagga      1500
     agcaagaata gtgccgattt ttaaagatgg aaaaaaggaa cttatatcta actacagacc      1560
     aatatctata ctctcaacta tgtcaaaggt ttttgaatca atcgttcacc ccttcatatt      1620
     tcatcatgtt aaaaacttac tgcatccacg tcaatatggc tttrtaccta agaaatctac      1680
     taattctaat ttgcttaatt acgtctcata tcttatcgat tcagttgata aaaacctaca      1740
     agtagacgta atttacacgg acttctctaa ggcatttgat aaggtagacc atggtattct      1800
     agttagaaaa ttattaagct ttggtatatc tggtatcctt cttgattggt gcaaatctta      1860
     cctctctaat cgtaatagca gagtagtgat acatggtgag agctctgagt cttttagtgc      1920
     tacttctggg gttccgcaag gctctaattt ggggcctcta ttctttgtgc tattcattaa      1980
     tgatatagca gacatattcg aaaattgtca gttttatttg tttgctgatg acttaaaaat      2040
     tgctaaaatt ataacacaag aatctgacgt ggtggcctta caaggcaatc ttgatagact      2100
     cgtagaatgg tgtgatttaa atcgaatggt cctcaaccca agcaaatgta gcttcataag      2160
     attttcgagg aagaaaagac ctattatgag ttactaccat atctcaggta aaaatcttaa      2220
     tgtaacagac tctgttaggg accttggcgt aatatttgat agtaaattga gatttgaaga      2280
     gcacgttaac actgttgtga aagcttccct caagttactc ggcttcattt ttaggcaatc      2340
     aagggatttt aaaaatccag caacaattct acgcctttac aatagtttaa ttcgtagtaa      2400
     gcttgaatac tgctgccagg tgtggtctcc tgcttacagg aagtattctg ataggctcga      2460
     aagcgttcaa aaaagattta ttaaatattt agtttatagg tttaatactc taagtcatag      2520
     tgaacgatat gaagacataa ttggcagctt taaattgcaa ttgctttcaa accgtagaga      2580
     tctcgtagac atgaagtttc tasataattt attcaaagga aagatcgatg atagtgaact      2640
     gttgagtaga tttaatatta agatacctca gagaacccct cgcaacccat gtctgttttt      2700
     caagacggaa agaactagaa cgaaccttgg acaaaatagt cccattaatc gcatctctcg      2760
     ttcatttaat gagtacttga aagaagatgt aacgttagac attggttgtg acgggctctc      2820
     agttttctta agaaaatgca accatatact caataaagtt aattaataga atgagttgta      2880
     aatgatttta actattatgt aatattaagt aattttatat ttttgctatt taattattth      2940
     ttttttctat agtgtaaata aatcattgtt attattgatg atgaatgatg tgttctccta      3000
     taatcagttg tacataatag tattagtata tcctaagaat gtatgtaatg taaaccaata      3060
     tgtacgacag ttggagatcc gtataaataa ataaataaat aaataaataa ata             3113
//
ID   CR1-4_LMi   repbase;    DNA;    INV; 4286 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4286
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3113-3113 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(927..1151,941..1738,1617..2585,2417..3256,
FT                 3072..4217)
FT                 /product="CR1-4_LMi_1p"
FT                 /translation="MEPLRQIASRAGKNSDVHSVCLPGGLIRDVEAALPGL
FT                 LSVRGAVVCKLLLMSALMTPVAWVLRTSSDRTGGWRNWADSVQGRKEFRCA
FT                 LGMSAGGPHPRCGGGLAGATERTGCSRLQVVAHVGTNDSCRLGSEDILRSY
FT                 GRLAELVKTAGLARGVQAELSICSIVPRVDRGPLVWSRVEGLNQRLRRLCD
FT                 SHGCRFLDLRYRVGNCRDPLDRSGVHYTKEAATRVAEYLWSAHVFRLGDSS
FT                 DEHSSIDIQTVKSGRIQKDSSTVKILAVNFQSIRNKVPEFTALQESLRARI
FT                 ILGTESWLNPDVGSFEIFSEEWDVYRKDRSGTIGGGVCVHCSPQKYSFCIP
FT                 TLEASKYLAKNGMYIAKIDQVRSEGVFVFIAVHKSIPSAELEVESDCEVIW
FT                 TRVTGIGEIKLIVGCFYRPPSSTVTVLESFKESLRSVARRYPDHALLVGGD
FT                 FNLPSIDWDAYAFTTGGTDKQSCELLLSTFSEHCFEQLNRQPTRNGNILDI
FT                 IATNRPDLVNDVTVETGVSDHDVVIATMATKVNKSVKKPRRVFVLERADKQ
FT                 LLASHLRNEWTSFSSGTVDVEELWAKFKCIVNKALEKYVPTKWIKDGKDPP
FT                 WFNSNIRKSEKQSSCTLGSKRSSKSNQKKLVEIRASIKRQCAKHTVTTTVI
FT                 PQQKILPRTEKTGPMETKQLHSRFKKVKQIKSEKVSRDSRVYKKTMREAYS
FT                 NYHRHTSAKDLAENRKNWSYVKSVSGSKVSIQSLVDHSGVVIEDSKMKAEV
FT                 LNLTFKKSFTQEDHANIPSFDGRTNSQMEDIVIGIAGVEKQLRELKTNKSP
FT                 GPDGVPIRFYKEYSAALAPYLACIYRESLIQRKVPSDWKKAQVTPVYKKGK
FT                 RTDPRNYRPISLTSVCCRILEHILSSNIVNFLETEKLLSMHQHGFRKHRSC
FT                 ETQLALFSHDILRAMDEGQQADCIFLDFRKAFDTVPHYSCISLRRKSFCPC
FT                 ISTALGSIDRAKPSLPFSLMTSCVLWMKGNRQTAYFSIFERRLTRYRTTAA
FT                 NEVRAYGIGTQICEWLEDYLSNRTQYVVLDGECSSETRVSSGVPQGSVIGP
FT                 LLFSIYINDLTDRVSCNLRLFADDAVVYRRVSSLNDCSRMQDDLDQISRWC
FT                 EEWQLALNVEKCKVMQMSRRNNPVMFEYSISSVLLDRVASIKYLGVTLHSD
FT                 MKWNEHIRTVVGKANGRLRFIGRILGRCDSSVKETAYKTLVRPRLEYCSSV
FT                 WDPHQIGLKEDIEAVQRRAARFVTGRFDQCASVTEMLRELNWESLEGRRRS
FT                 FREALLKKFRGPEFEADCRTILLPPTYISRKDHKDKIREIRARTDAYKYSF
FT                 FPRSIWEWNRKASN"
XX
SQ   Sequence 4286 BP; 1127 A; 868 C; 1181 G; 1109 T; 1 other;
     gcataattaa attgtgtgca ttttcattgc cggccaactc cgtaatttcc gctagtgcct        60
     cagtatttta agagmttttc ttggcagatt tcgttgtgct tctgtttcaa gagcttattc       120
     tcgcatattt gacaaatact gttgtgtata gttttctctg tgatttgtgt atttcaaaac       180
     aagtcagaga cgttgctaca gctagttgtc agtcagtcta ctgccacctg ccgccagtgt       240
     cacatcgtcc agagctctaa gtagcataat ttaatttgtg tgcattttca ttaccggtca       300
     atttcttaaa ttccgttagt gcttctgttt tattctcgcg catttggcag atttcgttaa       360
     agcttctgtt ttaagagttt tgaacagtgg gggaccgttt atcacagctc agtcagctac       420
     cagccgccat tagtaaagca ctagtgtagt agcgaattga agtatttagc agctttattt       480
     gttttcactc tttaggtgtt tcagtagcag tggtaggatg gatagggtgt gtgcgtgctg       540
     tgtgcggacg caggaggagt tggccgctgt tcgcgaacag ctgaacgtgc tttggccacg       600
     gtcagccgtc tccaggctgc tgcctcgggg tgtggcagcg gtggagaggt ggagtgtcgc       660
     atggggcacc tcaggtgcgc gtgggtcgcc cacggtctct gctgccatca cgtgtaccgg       720
     acgcagttga tccgccctcg ccgcagggtg agtggcgggt agcgcgttcg cgtcgctcga       780
     ggcggagggc caatgtggag gctggccgtg tggcatcgcc cgttcatcct gcgagtgatc       840
     aggtggccgg tccttcagca gggtccgagc aggcacacgg ggggaggggt ctgttagtga       900
     ttgggagctc caatgttagg cgcgttatgg agccccttag gcagatagcg tccagggccg       960
     gaaagaattc cgatgtgcac tcggtatgtc tgccgggggg cctcatccga gatgtggagg      1020
     cggccttgcc ggggctactg agcgtacggg gtgcagtcgt ctgcaagttg ttgctcatgt      1080
     cggcactaat gactcctgtc gcttgggttc tgaggacatc ctcagatcgt acgggcggct      1140
     ggcggaattg gtgaagactg ctggcctcgc gcgcggggtg caagcagagc tttcaatttg      1200
     cagcattgtt cccagagtgg atcggggtcc tttggtttgg agccgagtgg agggtctcaa      1260
     ccaaaggctt cgtcgactct gtgacagtca tggctgcaga tttctggacc tgcgttatcg      1320
     ggtggggaat tgtagggatc cccttgatag atcaggggtg cactacacaa aggaagcagc      1380
     tactcgggta gcagagtact tgtggagtgc acatgttttt aggctaggcg atagttctga      1440
     tgaacactcg tctatcgata tacagacagt gaaatcaggt cgcattcaga aggactcttc      1500
     aactgtcaaa atattagcag taaattttca aagtattaga aacaaagttc ccgaatttac      1560
     tgcattgcag gaaagtctcc gcgctcgaat aatcctcggg actgagagtt ggctgaatcc      1620
     cgacgttgga agcttcgaaa tatttagcga agaatgggat gtatatcgca aagatagatc      1680
     aggtacgatc ggagggggtg tttgtgttca ttgcagtcca caaaagtatt ccttctgctg      1740
     agctcgaagt cgagagtgac tgtgaggtta tctggacacg tgtaacaggt ataggcgaaa      1800
     tcaagttaat agttgggtgt ttttaccggc cacccagttc caccgtcaca gtgctagagt      1860
     cattcaaaga aagtttacga tcagtagcgc gaaggtaccc ggaccatgct ttattagttg      1920
     ggggcgactt caacctgccg agtatagact gggacgccta tgctttcact acagggggta      1980
     cagacaagca gtcttgtgaa ctattgttga gtacgttttc cgaacactgc tttgagcagc      2040
     taaatcgtca gcccacacgc aatggaaata ttttggacat tatagctaca aacaggccag      2100
     accttgtcaa tgatgtcact gtagagacag gggttagtga tcatgatgtc gtcatagcga      2160
     caatggccac caaagttaat aaatcggtca agaagcctag gagagtgttt gtgctagaaa      2220
     gagcagataa gcaattgtta gcgtcccact taaggaatga atggacatcg tttagttccg      2280
     gtacggtgga cgtagaggaa ttatgggcaa aatttaaatg cattgtaaat aaagcgctgg      2340
     agaaatatgt gccgacaaag tggattaagg atgggaaaga cccaccgtgg tttaatagta      2400
     atattcgaaa atctgagaaa caaagcagtt gcactctcgg ttcaaaaagg tcaagcaaat      2460
     caaatcagaa aaagttagta gagattcgcg cgtctataaa aagacaatgc gcgaagcata      2520
     cagtaactac caccgtcata cctcagcaaa agatcttgcc gagaaccgaa aaaactggtc      2580
     ctatgtaaaa tcggtaagcg gatcaaaggt ctctatccag tcactcgttg atcattctgg      2640
     ggtggtgata gaagacagca aaatgaaggc cgaagtttta aatttaacat ttaagaaatc      2700
     attcacgcag gaggaccatg caaacatacc ttcatttgat ggtcgcacta actcccaaat      2760
     ggaggacata gtaataggca tagctggtgt agagaagcag ctgagagagt tgaaaacaaa      2820
     caagtcgcca ggtccagatg gggtaccaat ccggttttac aaagagtact cggcggcatt      2880
     ggccccttac ttagcttgca tttatcgcga atctttgatc cagcgcaaag taccaagcga      2940
     ctggaaaaag gcacaggtaa ctcccgtgta taagaaaggc aaaagaacgg acccacgaaa      3000
     ttacagacct atatcattaa catcagtttg ctgtagaatt cttgaacata ttctcagttc      3060
     taatatagta aatttccttg agacggaaaa gcttctgtcc atgcatcagc acggctttag      3120
     gaagcatcga tcgtgcgaaa cccagcttgc ccttttctct catgacatct tgcgtgctat      3180
     ggatgaaggg caacaggcag actgcatatt tctcgatttt cgaaaggcgt ttgacacggt      3240
     accgcactac agctgctaac gaagtacgag cctatggaat aggtacccaa atatgtgagt      3300
     ggctcgaaga ctacttaagt aatagaaccc agtacgttgt cctcgatggc gagtgttcat      3360
     cagagactag ggtatcgtca ggggtgcccc agggaagtgt gataggaccg ctattatttt      3420
     ctatctatat aaatgatctg acggacagag tgagttgcaa tctgcggctg tttgctgatg      3480
     atgctgtggt gtacaggagg gtgtcgtcat tgaatgactg tagtaggatg caggatgact      3540
     tggaccaaat ttctaggtgg tgtgaggaat ggcaactagc gctaaatgta gaaaaatgta      3600
     aggtgatgca gatgagtagg agaaacaatc ccgtaatgtt cgaatacagc attagtagtg      3660
     tgctgcttga cagagtcgcg tcaattaaat acctaggcgt aacgctgcac agcgatatga      3720
     aatggaacga gcatataagg acagtcgtgg ggaaggcaaa tggtcgactt cgctttattg      3780
     ggagaatttt gggaaggtgt gattcgtctg taaaggagac cgcatataaa acgcttgtac      3840
     gaccccgtct tgagtattgc tcaagtgttt gggatcccca ccagatcggt ttaaaggagg      3900
     acatagaggc agttcagagg cgggcggcta ggtttgtaac tggtagattc gatcaatgcg      3960
     cgagtgttac tgaaatgctt cgggaactca actgggagtc gctggaggga aggcgacgtt      4020
     cttttcgaga agcactgttg aagaaattta gagggccgga atttgaggcg gactgcagaa      4080
     cgattctact gccgccaacc tacatttcgc gtaaagacca caaggataag atcagagaga      4140
     ttagggctcg tacggatgca tacaagtatt cgtttttccc tcgttctata tgggagtgga      4200
     acaggaaagc aagtaactag tagtggtact gagtaccctc cgccacgcac ctttgggtgg      4260
     attgcggagt atgtatgtag atgtag                                           4286
//
ID   CR1-4_NVi   repbase;    DNA;    INV; 4499 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4499
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 751-751 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(8..451,405..1415)
FT                 /product="CR1-4_NVi_1p"
FT                 /translation="MAETSAGSSCAQATIYYKCHPKIEVKTVVCLICESVY
FT                 HTSDFARLDGAIKLSSVLGICNEHHDLDLTSNISKETLSNDARHIVAQIKS
FT                 NHNSESRKKLLDNLEIISDEEEGEVYENSLKRENSLLRELNKELTEKKQDA
FT                 KRFTGETKKQKKNKMLRDLLEKQKSDTNTVKNKTFAEVMSYSKTSTRSKRV
FT                 PSIIIKNKSAHTIDQINLFVAHYLNKDKAIQTKKVHKKKDEVIVNCLNEES
FT                 TSKAFSILKKKLADECEVNKEKVENPKVKVVGINNFENLDDKKLEEDINER
FT                 NFSKFSKKCIVLHTYKNNKTNLQTALIEMPAELYQSVRESNNKLFVGYQNC
FT                 RVYDYCNIKPCFNCGRFGHNGLKCNNRPICFKCTGNHKTRECERQGNIMKC
FT                 PNCIYSNSKYKTEYKTEHMATDSHECKILQAKIRKFIDFTDYTMQPILPRY
FT                 VGMAGATTVKAAGWRNIGMSTASINTLNDNIPNKGRNKN*"
FT   CDS           join(1587..2495,2538..4007)
FT                 /product="CR1-4_NVi_2p"
FT                 /translation="KVCQKSHVXIICTIICTETWIVQHPHFYQLHGYKLCY
FT                 NESKINRADGVLVYIKNNIYEKTKVEVIDKLSVVSSDLKLQSGESLRVSAM
FT                 YRCHDVPKTEFLNSVKKFLSKHIRTKNHCIIGDFNIDIIESNVQNNNIGAI
FT                 SISQEFLNNFFEQEFIPYYRGVTRPSLDNESGSCIDNCFAKTRDVNIESYK
FT                 LCTPFNDHYPLVISIDQLKVQNEQEKIENCINYRKLKEYAKKIEWNSCLHL
FT                 QDPNLALDELIKMIHSCVGKATCNKKTKNKQLPRKKWITKAILVSCKNKEN
FT                 LYNIWKKILQINKTIKDAKYKFENNEIRRSGDNPRQLWSIINSKMGKSNKQ
FT                 MKSPDCIVVNNQKIVNKTNIANEMNDYFSQVGIDLSNQINNKCDDQIRLPA
FT                 RNSESIFIQPTNVCEIHRVISEMKKKAGGVDNINASTIKCIAMFLAKPLEH
FT                 IFNISIQQSIWPNALKRADIVPIHKSGDSTCIANYRPISLISNIAKIFEKI
FT                 IYNRLFNFIMKHNIISERQFGFVRGRGATDALDCLADIIYKSLDKSKPIIT
FT                 TFLDLAKAFDTVDHRILLDKLERYGIRGCALKLLTSYLSGRKQCVKINNFK
FT                 SEYKDISIGVPQGTILGPLFFILYVNDLLIDMLKDSIMSYADDTVIISSDD
FT                 SWSAAQDKMNFYLSKVAKWLMLNKLSLNVNKTVYITYGNYCDSVPEDINIK
FT                 IGGNFINRVESHKYLGLHFDYNMKWNIHIDSIVKRTRYLIFVFAKIKSIMD
FT                 RKTLMMIYHAFFQGLVNYGIIAWGGHITIVCTRYKEYKRSY*"
XX
SQ   Sequence 4499 BP; 1871 A; 608 C; 802 G; 1216 T; 2 other;
     cgccaacatg gcggagacga gcgcaggctc gtcgtgtgca caagcgacaa tttattacaa        60
     atgtcatcct aaaatagaag tgaaaacagt tgtgtgtcta atttgtgaaa gtgtgtacca       120
     cacaagtgat tttgcaagat tagatggtgc gattaaatta agtagtgtat tgggaatatg       180
     caacgaacat catgatctcg atctaacctc aaatataagt aaagaaacgc tgagtaatga       240
     tgcgaggcat atagtcgctc agataaaatc aaaccataac tcggaatcta gaaagaaatt       300
     gctcgataat ttagaaatca tcagtgatga agaagaagga gaagtgtatg agaatagttt       360
     gaaaagagaa aattcactgt taagagaact aaataaagaa ttaacagaaa aaaaacaaga       420
     tgctaagaga tttactggag aaacaaaaaa gtgacacaaa tacagtgaaa aataaaactt       480
     ttgcggaagt aatgtcttat tcaaaaacta gtaccaggtc aaaaagggta cctagcataa       540
     taataaaaaa caaatcagca cataccattg atcagataaa cttgtttgta gcacactatt       600
     taaataagga taaggcaatt cagaccaaaa aagttcacaa gaaaaaggat gaagtgattg       660
     ttaattgttt gaatgaagaa agtacaagta aagcttttag tatattaaag aaaaaactag       720
     ctgatgaatg tgaagtgaac aaagaaaaag tagaaaatcc aaaagtaaaa gtagttggaa       780
     ttaataattt tgaaaaccta gatgataaaa aattggaaga agatataaac gaaagaaact       840
     ttagtaaatt ttcaaaaaaa tgtatagttc tacatacata taagaacaac aagactaact       900
     tgcaaacagc gttaattgaa atgccagcag aattgtatca aagtgtcaga gaaagcaata       960
     ataaactatt tgtaggatat caaaactgca gagtttatga ttattgcaat attaaaccat      1020
     gcttcaactg tggcagattt ggacataatg gtctgaaatg caataatagg cctatctgtt      1080
     ttaagtgtac gggcaaccat aaaactagag agtgtgaaag acaaggaaac ataatgaaat      1140
     gtccgaattg tatatacagt aatagtaaat acaagacaga atacaagaca gaacatatgg      1200
     caacagacag ccacgaatgc aaaattttgc aagccaagat aagaaagttt attgacttta      1260
     ccgactatac aatgcaacct atattaccaa gatatgtcgg catggcaggg gccacgacag      1320
     ttaaagcagc gggatggaga aatatcggga tgtcaacagc ctcgattaac acactcaacg      1380
     ataatatacc aaataaagga agaaacaaaa attaaccatg gatcaggata ttaacattga      1440
     agaagtaggc aaggcagagt gtgaagtaga aaacatcaga gaactcaaca ggaagatcat      1500
     gaagatcgtg aagaagaaaa atttaatttt gtgtgtgaat ataagaagtc tcaatgcaaa      1560
     ttttgaaaaa ctagaaacat ttgtagaaag tatgtcaaaa aagccatgtg tktataatat      1620
     gtacgataat ctgtacggag acatggatcg tgcagcaccc tcatttctat caattacatg      1680
     ggtataaatt atgctacaac gagagtaaaa ttaatagggc agatggtgtc cttgtgtata      1740
     ttaaaaataa tatttatgaa aaaactaaag tagaagtaat tgataaattg agtgtggtta      1800
     gctcagatct taagcttcaa tcaggtgaat cattaagagt ttcggctatg tacaggtgtc      1860
     atgatgttcc caaaacagaa tttcttaata gtgtaaaaaa atttctatca aaacacatta      1920
     gaaccaaaaa ccactgtata ataggagatt tcaatataga tataatagaa agtaatgtac      1980
     aaaataataa tataggtgca atatcaataa gtcaggaatt cttaaataat ttctttgaac      2040
     aagaattcat tccgtactat agaggtgtaa caagaccctc tctagataac gaatcgggtt      2100
     cttgtattga taattgtttt gcaaagacta gagacgttaa tattgaatct tataaactat      2160
     gtactccgtt taacgaccac tatccgcttg taataagtat cgatcagctt aaagtgcaga      2220
     atgagcaaga aaagatagaa aattgtatta attatagaaa gttaaaggaa tatgcaaaga      2280
     aaatagaatg gaattcatgt ttgcatttgc aggatccaaa tcttgctttg gatgaactaa      2340
     taaaaatgat acatagctgt gttggaaaag ccacttgtaa caaaaaaact aagaataaac      2400
     aattacctag gaaaaaatgg ataactaaag caatattagt atcgtgtaaa aataaagaaa      2460
     atctatataa tatatggaaa aaaatcctac aaatataact ctaaagcatg aatataaaaa      2520
     ttatgaaaaa attttgaaat aaaacaataa aagatgctaa atacaaattc gaaaacaatg      2580
     agataagaag aagtggcgat aatccaagac agctatggag catcataaac agtaaaatgg      2640
     gcaaaagcaa caaacaaatg aaatcgcctg actgtatagt ggtaaataac caaaaaatag      2700
     taaacaagac aaatatagcg aatgaaatga atgattattt tagtcaagtt ggaatagact      2760
     taagtaacca aataaataat aagtgcgatg atcaaataag actgccagca agaaatagcg      2820
     aatccatatt tatacaacca actaatgttt gtgaaataca tagagtaata agcgaaatga      2880
     agaaaaaagc tggtggggta gacaacatca atgcaagtac aatcaagtgc attgctatgt      2940
     ttctggcaaa acccttggaa catattttta acataagtat acagcaatcg atttggccga      3000
     atgcgctaaa acgagctgat atagtaccaa ttcacaagtc tggagatagt acatgtattg      3060
     caaactatcg cccaatatca ctgatttcta atatagctaa aatatttgaa aaaattatat      3120
     acaacagact tttcaatttt ataatgaagc ataatattat atcagagaga cagtttggtt      3180
     tcgtcagagg cagaggagca acagatgcgc ttgattgtct tgcggatatt atatacaaaa      3240
     gtctagacaa aagtaaacca ataataacga catttctaga tctagccaaa gcttttgata      3300
     ctgttgatca cagaatatta ttggataagt tagaaagata tggaataaga ggatgtgcct      3360
     taaaactctt aactagctat ctatcaggta ggaaacaatg cgttaagata aataatttca      3420
     aaagtgaata caaagatatt tccataggtg ttccgcaagg aaccatttta ggtcctttat      3480
     tttttatcct atatgtaaat gacctactga tagatatgct aaaagactct ataatgtctt      3540
     atgcagacga cacagtcatc atctcgagtg atgactcgtg gtcggcagca caggacaaga      3600
     tgaattttta tcttagcaag gttgccaaat ggctgatgtt aaataaacta tcgttaaatg      3660
     taaataaaac tgtatacata acctatggca actactgtga tagtgttcca gaggatataa      3720
     atattaaaat tggaggcaac tttataaata gggttgaaag ccataaatat ttagggttac      3780
     atttcgatta caatatgaaa tggaatatac acattgactc cattgtaaaa agaacaagat      3840
     atttaatttt tgtctttgca aaaattaaaa gtataatgga tagaaaaacc ttaatgatga      3900
     tctaccatgc attcttccag ggcctagtca attatggaat aattgcctgg ggtgggcata      3960
     taacaattgt atgtactcga tacaaggagt acaaaagaag ttattaaaaa ttattaacag      4020
     aaatcatttt gaaacacaaa attccccact aacagttagg caattgttcc aaattgaagc      4080
     aataacatat cactatggga aactaaggga tatttatagt aaaaatacga aaactactag      4140
     gaaaaagagt atatcattgc caaaaattaa taaatctata agtaagaaaa gcagctacta      4200
     catggctgtg aaaattttca atttactctc taatgatctc aaagagttaa cagttagaaa      4260
     agtaactata aaaaataaat taaaggattt cataagaaat ctaatagtat gaaatgaatt      4320
     agagacacta gtttaacttc tgttataagt acaagaaaga acagtaygaa aagattaatt      4380
     ttagttttta gtttttaagc tatctgtata attattgtgc catacctatg tacaggcaac      4440
     ttgtttgcct ctataggaag cctttaaaag gcttatgtat atggtcataa ataaataaa       4499
//
ID   CR1-4_TCa   repbase;    DNA;    INV; 4055 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   04-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   CR1-type retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   CR1-4_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4055
RA   Jurka J.;
RT   "CR1-type retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 738-738 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1100
FT                 /product="CR1-4_TCa_1p"
FT                 /translation="MAEFNCCHCFKSVSRDTPIVVCDGCSLNIHCRCLKIS
FT                 ENEIAFISQSRSPNIKLFCNRCNVTITAISEIKKLVNDIKTSFDERLSELE
FT                 SLIINNNTSQAINREEIIAESVDRSARACNVIMYNVKPVANKQDVDVVNDV
FT                 LEVIDPSLVIGPENVFRVGKTVGDKPRLLKLQFKTQQMARLCLKKKSSLLQ
FT                 HPQFAHITISDDKTPGQLKHLNNLRDELKRRLDVGEKDLTIKYVNHVPKII
FT                 SHQKN*"
FT   CDS           1118..3880
FT                 /product="CR1-4_TCa_2p"
FT                 /translation="MALLYTNIASLSSKFNDLLLEVTEFRPSIIALTETWL
FT                 NPSISDDAVHIENYSIYRDDRLSQKGGGVCFYVDKIKISKFFKITQICISV
FT                 KPYDSLWLKFEGNEQTFVIACIYRPPTGASFNNHENDKNLFNTIQSTINQY
FT                 PNLIIMGDFNFPCIDWSAKNTTGQTIIEKQFSELLLENNLSQIVTEPTRFR
FT                 SQQRPSLLDLVILSDVNLVSSLNVSNPVGTSDHSKIEIELQIMIYSEPNAR
FT                 IKTTSIVDYTRIDESLLTYDWNGLDSLNAEEQWKHFKSILQTCITTNSRLF
FT                 TNRLRKDKPWINQHMLDKIKYKAKLWKKFKRKPTEDNFSAYKRFSNQLKSD
FT                 LQIARCNYENSILNKPKLFYSHVRKFISSRVSVPLVRNASGLLCSDHTETA
FT                 NTLADSFAATYNLNINNNIPSFMPTSTFSGLSYINFTPDLVKSQLCAIKLN
FT                 TAPGPDQIPPKLLRTCAASLSGPLAKMMTKSFLQGTLPYEWLQATITPLYK
FT                 SGDKLDPANYRPVSLTSTCCKIMEKVIVKELLTYMRKNNLIPEHQHGFLPG
FT                 RSVVTNLLSCTNLWTKMLDTNQPVDIIYLDFSKAFDKVPHNLLLAKLESYG
FT                 VTGNLLDWIRAFLSNRNYCVKVCGKFSYSKPVLSGVPQGSVLGPILFLLYT
FT                 ADLLFSLDSYSAYADDIKLFANPLVTDLQDQLNLIFQWSEKWQIPLNIAKC
FT                 CVLQCGHNNPKYLYHINGTLLSVKTSTKDLGVIVNDKLGWSEQCLASVGRA
FT                 RKMFYLLKHVFPNPSVSFISKVYITYIRPHLEFAIPVWRPYLLKDIDLLER
FT                 TQHLVTRWTHCLRQVSYEQRLEILKIPDLRARQNRADAIQIFRLTHGLFPG
FT                 VTRNFLQIQYHDRLRGHSYKLKKEPFKTTVRKNYLTNRAFDIWNGLPDNVV
FT                 AAVTVSSFKNQYDTLQ*"
XX
SQ   Sequence 4055 BP; 1325 A; 745 C; 684 G; 1301 T; 0 other;
     gtctctgcgt gctcttgcct ttgggattca ttttcagtgg ttgattcttg gtgttgattg        60
     ttgaatttga tatctgggtg tatgtggttg ttgttgtttc ctctggaaat tactattttt       120
     gcgatttcgg taagttattc ttgtttaatt cgttaatatc cgtcattaga tacgcataat       180
     tatatcttat cgcggcagta taagatagcg ctcgcccctc tatagcagca gcagctggta       240
     tcgcggcggc gcggcgcagt gaaaatttag tatttatcgc tctgtcgcag agtgagcgtc       300
     tggtgtccaa attttgtcta cattaatttc attaatttca gtttaaatca ctaaatttaa       360
     tggctgaatt taattgctgc cactgtttta aaagcgtaag tcgtgataca cctatcgtgg       420
     tgtgtgacgg ctgttcgcta aatattcact gtcgttgcct caaaataagc gaaaatgaaa       480
     tcgcctttat ttctcagtct cgctctccaa atatcaaact gttttgtaat agatgcaacg       540
     taactatcac agcaatttca gaaattaaaa aactcgtaaa tgacataaaa acatcatttg       600
     atgagcgtct tagcgaactc gaatctctta ttattaataa caatacgtct caagctataa       660
     accgcgaaga aattatcgcc gaatctgtgg acaggtcggc tcgtgcgtgc aatgttatta       720
     tgtacaatgt taaacctgtc gctaataaac aagacgtgga tgtggtaaat gatgtcctcg       780
     aggtcattga tccatcactt gtgattggtc cggaaaatgt ttttcgcgta ggaaaaaccg       840
     tcggtgataa acctcgctta ttaaaattgc aatttaaaac tcaacaaatg gcacgtctat       900
     gcttgaagaa aaaatcgtct ttgctgcagc acccacaatt tgctcacatt actattagtg       960
     atgataaaac cccgggtcaa ctaaagcatt taaacaattt gcgtgatgaa ttaaagcgaa      1020
     gacttgatgt tggcgaaaag gacttgacaa ttaaatacgt taaccacgta ccaaaaatta      1080
     tttcacatca aaaaaactaa atatttacca ttgttcaatg gctcttctgt atacgaatat      1140
     cgcatcttta tcttcaaaat ttaatgattt gttattagaa gtaactgaat ttagaccttc      1200
     tattatcgca ctcacggaga cttggcttaa tccgtctatc tctgatgatg ctgtacacat      1260
     tgaaaattac tctatttaca gagatgatcg cctatctcaa aaaggtggcg gtgtgtgttt      1320
     ttatgtagat aaaattaaaa tttcaaaatt ttttaaaatt actcaaattt gcatatctgt      1380
     taaaccttat gattctctat ggttaaaatt tgaaggaaat gaacaaacct ttgttatagc      1440
     atgtatttac agaccaccaa caggagcgtc ttttaacaat cacgaaaatg ataaaaatct      1500
     atttaatacc atacaatcaa ctattaatca gtatcctaac ttaattatca tgggagattt      1560
     caattttcca tgtatagact ggtctgctaa aaacacaaca ggtcaaacaa tcatcgaaaa      1620
     acaattttct gaattgctct tggagaataa tttgtcacaa atagtcactg aacctacacg      1680
     atttagatcc caacaacgtc cttcattact tgatttggta attttgtctg acgttaacct      1740
     tgtatcgtct ttaaacgttt cgaatcctgt aggtacatct gatcattcaa aaatcgaaat      1800
     tgagttacaa attatgatat attcagagcc aaatgcaaga attaaaacaa catcaattgt      1860
     tgactacact cgcatagacg aaagtctctt gacttacgac tggaatggtt tagattcact      1920
     aaatgcggaa gaacaatgga aacattttaa atcgatttta caaacttgca ttacaacaaa      1980
     ttccagactg tttacaaacc gactgagaaa agataaaccg tggataaatc aacacatgct      2040
     tgacaaaata aaatacaaag ctaaattatg gaaaaaattt aaaaggaagc ctactgaaga      2100
     taatttttct gcttataaaa gattttctaa ccaactaaaa tctgatttac aaatagccag      2160
     gtgtaattat gaaaattcta tattaaataa accaaaacta ttttattccc atgtacgtaa      2220
     atttatctct agtcgtgtgt cggtcccttt agtacgaaat gcttcaggtc tactctgctc      2280
     cgatcataca gaaactgcaa acactttagc ggacagtttt gctgctacct ataatttaaa      2340
     cattaataat aatataccgt catttatgcc tacaagtaca tttagtgggt tgtcttatat      2400
     taattttact ccggatctgg taaaaagcca actctgtgcc attaaattaa atacagctcc      2460
     aggtccggat cagatacctc ccaaactcct gagaacttgt gctgcttcgt tgtcgggccc      2520
     acttgccaaa atgatgacaa aatcattctt acaaggcact ttgccctacg agtggttgca      2580
     agcaacaatc acgcctttgt acaagtcagg agataaactt gatcctgcta actatagacc      2640
     tgtaagtctc acgtcgacat gctgtaaaat tatggaaaaa gttatagtca aggaactatt      2700
     aacttacatg agaaaaaata atttaatacc tgagcatcag cacggctttt taccaggtag      2760
     gtcagttgtc acaaatttgc tatcctgcac aaatctatgg acaaaaatgt tagacactaa      2820
     ccaacctgta gacataattt accttgattt tagtaaagcc tttgataaag tccctcacaa      2880
     tctcttgtta gcaaaactgg agtcctatgg tgtaacagga aatttgcttg attggatccg      2940
     agcgtttcta tcaaatcgaa actattgtgt aaaagtctgt ggtaaatttt cgtactctaa      3000
     accagtatta agtggggtcc cacagggatc agttcttgga ccaattttat tcttgttata      3060
     tacagcagat ttattgtttt cactggacag ctattcagca tatgcggatg atattaagtt      3120
     atttgctaac ccacttgtca cggacttgca agaccaactt aatttaatct tccaatggag      3180
     cgagaagtgg caaataccac taaatattgc aaaatgctgt gtacttcagt gtggccacaa      3240
     caacccaaag tacctttacc atataaatgg cacactcctg agtgtaaaaa cctcaaccaa      3300
     agatctaggg gtcattgtaa atgataagtt aggatggtca gagcaatgtc tagcatcagt      3360
     gggtcgagcg cgtaaaatgt tttatttgct aaagcatgtt tttccaaatc cttcagtcag      3420
     ttttatttca aaggtgtaca tcacttacat aaggccgcat ttggaatttg ccattccagt      3480
     ctggagacct tatttgttaa aggatattga tttgctggaa agaactcagc acctggtaac      3540
     tagatggaca cactgtttaa gacaagtttc atatgaacaa cgtcttgaaa tactcaaaat      3600
     accagatcta cgtgctcgtc aaaacagggc agatgcaatt caaatttttc ggcttactca      3660
     tggtttattt cctggagtaa cacgcaattt cttgcaaatt caatatcatg acagacttag      3720
     aggtcattct tataagctga aaaaagaacc atttaagact accgttagaa agaattattt      3780
     gacaaatcgt gcatttgata tatggaatgg cttgcctgat aacgttgttg cagctgttac      3840
     tgtttcttcc ttcaagaatc aatatgacac attacaataa ttaacattaa cctttattaa      3900
     ttaactaatt taactgtaga ttaaaattgt atttcatttt tcattattca atggtgtttt      3960
     atttaacacg aaaccgtatt tcttgatatt ttgctataaa ggtgttaacc tcagcaaaga      4020
     atctatgtta ataataataa taataataat aataa                                 4055
//
ID   CR1-50_AAe  repbase;    DNA;    INV; 4125 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   29-JAN-2019 (Rel. 24.02, Last updated, Version 2)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-50_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4125
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1137-1137 (2011).
XX
RN   [3]
RP   1-4125
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-JAN-2019).
XX
DR   [3] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >91% identity.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..1050
FT                 /product="CR1-50_AAe_1p"
FT                 /translation="MTMEKKQCKECQLDVNDIEPIRCGFCDAVFHISQQCC
FT                 GFNYRTNRDVLSQGKLMFICADCRSELDGRSVKRYLEDKMQSQMISPTGVT
FT                 ASDNLSSQVQLLAGVVDKLSKKVDVLASTTVAGGKTKQLLTPSFRAWPKPG
FT                 AKRPRVEQYDSAALTIDRGTRDIDLSDLSIGSIMPTPTPPKFWLYLSGFQP
FT                 LISCDDVQKIVARCLDLSAPCDVIRLVPKGKDVSNMSFVSFKVGLDPSARD
FT                 QALLASTWLDGLVFREFVDQSKNSHRPSIKPVDFNQTPV"
FT   CDS           954..4040
FT                 /product="CR1-50_AAe_2p"
FT                 /translation="MAGWIGVSGVRGPIKKLPSSIDQTCGLQSDSCIMRSI
FT                 SDGGNPRVPITGEYPYSISPPRTLNRFMLQTNTADVSLYYQNVRGVRTKID
FT                 DLLLAAMDCNYDVIMLTETGLNDCINSLQIFGQTFNVFRCDRSCMNSNKTT
FT                 FGGVLIAVNRRLASTQIRIRRGLTLEQVFVEVAVDRNHLMIGVVYIPPDRS
FT                 RDVDLIEEHIASVRELCDHASFDDQILICGDYNQPRLQWLLNADGEVQLAG
FT                 NSSLAPASAALIDGMDFLNMIQANSHRNQHDRTLDLVFRSNDCTPIISEAA
FT                 IALLPVDLHHPPLEMQISIQCERQIDKRLPAADEPALDFSRIDYDALLDYF
FT                 STFDWRCLNACRGVDDMASNFCFVIQQWLKNNVPHRRRPFSPAWSTSLLRK
FT                 LKREKNACQRKYRKEQTAYSKLKFQRASNAYRSLNASLYKSHVLRVQANLR
FT                 LNPKSFWKFVNSKRKDPAIPRNMVYDHVKASSSAECCELFANFFASVFDHT
FT                 ASSTVEAESASSEVPLDFLSLTTFEVTPAMVITAARKLKSSLSPGPDGVPS
FT                 VLLSRCAAVLADPLSKIFTRSLNDGIFPAIWKQSYMFPVFKAGDRENVRNY
FT                 RGITSLSAVSKLFEIIVSEVILSQSKHYVSLDQHGFMPGRSVTTNLLCFTN
FT                 TCITAMEEKAQVDVIYTDLKAAFDRIDHNMLLSKLIRLGATNKLASWLASY
FT                 LIGRQLRVKIDSCVSTPFCNSSGVPQGSNLGPLLFTLFFNDVASTLGVDCK
FT                 IIYADDMKIYLVIRSVEDCHRLQNLIDKFIDWCQLNKLIVSIPKCSVMTFH
FT                 RSKRPLLFDYRMNGSRLRRVDEVIDLGVTLDSKLTFNNHYASIIAKANRQL
FT                 GFISKIAKDFTDPYCLKSLYCALVRPILETASIVWTPNDVSWTLRIERVQR
FT                 RFIRMALRHLPWRDPLNLPAYPARCKLLNMDTLEKRRKIQQAMFVAKLLNN
FT                 EIDCPRLLSKLDIRAAQRPLRQRSLLQGRFHRTTFGYNEPVSSMIRSFTMV
FT                 EDFFEFAETTVCFKNKITRSSIL"
XX
SQ   Sequence 4125 BP; 1085 A; 898 C; 924 G; 1218 T; 0 other;
     tcactagctg tggtgcacac tgtgttttta tccgttgttt ttttacgttt ttctgtttat        60
     taattcggtt ttaaatactc atccattatc gtactagtag tttaatcgaa ctgtgatcct       120
     accatacatt ggacaaatcg aaaacgatct cggaattgct taatttctag agaaactctt       180
     gtcgaattta ccggcttacc agttgtggtt atgacgatgg agaagaaaca gtgcaaagaa       240
     tgccaactgg acgtgaacga tatcgaaccg atacgttgtg gcttttgtga tgccgttttc       300
     cacattagtc aacaatgctg tggattcaat taccgtacca atcgagacgt tttgtcgcaa       360
     gggaagctga tgtttatctg cgccgattgc cgatctgagt tggatggccg aagcgtgaaa       420
     cgctacctgg aggataagat gcaatcacaa atgatttctc ctactggtgt gactgcgtct       480
     gataatttat catcccaagt acaattgctt gctggagtgg tggacaaact gagcaagaaa       540
     gttgatgttc tcgcttcgac tacagttgca ggaggtaaaa ctaagcaatt gctaacacct       600
     tccttccgtg cgtggcccaa accaggagcc aaacgtcctc gtgtggaaca atatgactcc       660
     gctgccttga ctatcgatcg tggtacaaga gacatcgacc tcagtgatct ttcgattggt       720
     tcgattatgc ctactccaac gccgccaaaa ttctggttgt atttatccgg attccagcca       780
     ctcatatctt gcgatgatgt gcagaaaata gtggctcgct gtctggacct atcagcaccg       840
     tgtgatgtaa tccgtttggt tccgaaaggc aaagatgtct cgaacatgtc gttcgtttca       900
     tttaaagttg gtctcgatcc gtcggcgcgc gatcaagcgt tattggcatc aacatggctg       960
     gatggattgg tgtttcggga gttcgtggac caatcaaaaa actcccatcg tccatcgatc      1020
     aaacctgtgg acttcaatca gactcctgta taatgcgctc tatttcggac ggtgggaacc      1080
     ctagggttcc catcacaggc gagtatccgt attcaatatc tcccccacgt acactcaacc      1140
     gttttatgtt gcagacgaac accgccgatg tatcccttta ctatcagaat gttcgaggtg      1200
     ttagaacaaa aatcgacgat ttgcttctgg ctgctatgga ttgcaattac gacgtcatta      1260
     tgctgacgga gactgggttg aacgattgca tcaattccct gcaaatattt ggacagacgt      1320
     tcaacgtttt tcgatgtgac cgcagctgca tgaatagcaa taaaacgacc tttggtggtg      1380
     tgctgatagc agttaaccgt cggttggcta gtacacaaat tcgcatacgt cgcggtttaa      1440
     cgctggaaca agtatttgtt gaggttgctg ttgaccgtaa tcatctcatg attggagtag      1500
     tttacatccc accagaccgt agtcgagacg ttgacttgat tgaagaacat atagcttccg      1560
     ttcgagaact ttgtgaccac gcatcctttg atgaccagat tttgatatgc ggagattata      1620
     atcagcctcg tctccagtgg ttactgaacg ctgatggtga ggtacaactt gctggaaatt      1680
     catctttagc tcctgcgagt gctgctttga tcgatggtat ggactttttg aatatgatcc      1740
     aagcaaattc ccatcgcaat caacatgatc gaacactgga ccttgtattt cgctcgaacg      1800
     actgtactcc aatcatcagt gaagctgcga ttgcattgtt gccagtagat ttgcatcatc      1860
     ctccgctgga aatgcagatt tccattcaat gtgaacggca gattgataaa cggttgcctg      1920
     ctgctgacga accggctctt gattttagta ggattgacta cgacgcactt ctggattatt      1980
     tttctacttt tgattggaga tgcctaaatg cttgccgagg tgtcgatgat atggcttcaa      2040
     acttctgttt cgtcattcaa caatggctaa aaaataacgt tcctcaccga agacgtccgt      2100
     tctcgcctgc ctggagtacg tcactgcttc gaaaattgaa acgtgagaag aatgcgtgtc      2160
     aacgtaaata tcggaaagag caaactgcgt acagtaagtt gaagttccaa cgagccagta      2220
     atgcgtaccg tagtttgaat gcatcgctgt acaaatccca cgtgctgaga gtgcaagcta      2280
     atcttcgttt gaatccgaaa agtttttgga aattcgtgaa cagcaaaaga aaagatccgg      2340
     ccatccctag aaatatggta tatgatcatg tgaaggcaag ctcctctgct gagtgttgtg      2400
     agctatttgc gaactttttt gcttctgttt tcgatcatac tgctagttcc acggtggaag      2460
     ctgagagtgc ttcctcggag gtcccgctgg atttccttag tctgacgact ttcgaagtaa      2520
     ctcctgcaat ggttatcact gctgccagaa aattgaagag ttcattgtcc cccggacccg      2580
     atggcgttcc atcagtattg ctcagtcgct gtgcagctgt tctggctgat ccgctttcga      2640
     aaattttcac tcggtctctc aatgatggta tatttccggc catttggaaa caatcgtaca      2700
     tgtttccggt cttcaaggct ggagataggg aaaatgttag aaattacaga ggaattacaa      2760
     gcttgtcagc agtatcgaag ctgttcgaaa ttatcgtcag tgaagtcatt cttagtcagt      2820
     cgaagcacta cgtctcactc gatcagcatg gttttatgcc tggaagatct gtcactacga      2880
     atctgctttg ctttactaat acatgtataa ctgctatgga ggagaaagca caggttgatg      2940
     tgatctacac cgatttgaag gcggcctttg accgaatcga tcataatatg ctattgtcga      3000
     agcttattcg ccttggtgcg actaataaac tcgcatcatg gctcgcctcc tatttgatcg      3060
     gaaggcagct acgtgttaaa atcgattcct gcgtttcgac cccattctgt aattcgtcgg      3120
     gtgtacccca aggaagcaat ttgggtcccc tattgtttac actgtttttc aacgacgtcg      3180
     cttcgacatt aggtgtggac tgcaaaatca tctatgctga cgacatgaaa atttatctgg      3240
     tgattcgatc agtggaagac tgccatcgtc tgcaaaatct gatagacaag tttattgact      3300
     ggtgccaact gaacaagtta attgtcagca ttccaaagtg ctctgtaatg acatttcacc      3360
     gctcgaaacg accacttttg ttcgactata ggatgaatgg atccagactt cgtagggttg      3420
     atgaagtgat tgatttagga gtgacgttgg actcgaaatt gaccttcaac aatcactatg      3480
     cgtcaataat agccaaggca aatcgacagc tgggcttcat atcgaaaata gccaaagatt      3540
     tcacagaccc gtactgtttg aaatcactat actgcgcgct ggtacggcca attctcgaaa      3600
     ctgcttcgat tgtttggacg ccaaatgatg tttcctggac attgaggatc gaacgtgtcc      3660
     aacgaaggtt cattcggatg gccctgcgtc atctaccctg gcgtgatcca ctgaatcttc      3720
     ctgcatatcc tgctcggtgc aagctactca acatggacac ccttgagaaa aggcgtaaaa      3780
     ttcaacaggc gatgtttgta gctaaacttc tgaacaatga aattgattgt ccacgactgc      3840
     tttccaagct agatattcgg gctgctcaac gacctctccg gcagcgatca ttgctacaag      3900
     gcagatttca ccgaactacg tttggatata atgaaccagt gtcgtcgatg attcgctcat      3960
     tcactatggt tgaagatttc tttgagttcg ctgaaacaac tgtgtgtttt aaaaacaaga      4020
     ttactcgctc gtccattttg taatttcttt gttattagtt cattcattaa gaccttgaag      4080
     tcagatggat aaatattggt aaataaataa ataaataaat aaata                      4125
//
ID   CR1-51_AAe  repbase;    DNA;    INV; 6056 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-51_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6056
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1138-1138 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           236..1675
FT                 /product="CR1-51_AAe_1p"
FT                 /translation="MASVVCSGCVHKITTESDRVYCFFGCDKILHTKCAEI
FT                 NLTGAKALKENPALRYICFDCRKNQLSINDVQSKCESVLKSVNELHSIQKS
FT                 TIERIVNLERSIADSVSSSCEKVVSKCIEKLLTDLRDSACYVQHAVPNIAA
FT                 GPSYAAVVQTGVPLSQRTENYKRKVADTYSQNSAKKLKPNSADDDVANDEG
FT                 QWLRSGKRRNRIIQSTHLKATSVESSIRTPIGRPKPSQVPKMNRTVVIKPK
FT                 VSQDVDTTKSEIKSNLDPVVHAVKDVFFNDNGNAIIRCDSQQSALKLIDSA
FT                 QSSLGTKYEIGIQTALRPRVKIVGFSEVMQDEFISKLIKQNNLPDNAELKV
FT                 VRFTKSKKLKDNPMSVVLEVDACTFKILLNAKYVNIEWERCPVFESIDVLR
FT                 CFRCSEFGHIAANCNKPFCCPKCTECHEATECMSEYEKCINCTIANKAQNV
FT                 PADQQLEVNHCSWSNECPVYLKRLEKSRQRIDYST"
FT   CDS           1691..5647
FT                 /product="CR1-51_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLLITPLCCESGAYNAAYSVNTSPQGSGHQHNELAGP
FT                 GKAFCSICPTEAFIGTTPALNRVHILQSTATSFDDMVQDDKAGPTDTLSPD
FT                 SGHQHNELPGPGKASYSICPAEVYLDTAPALNRIHALQNSDLQQENVAVTL
FT                 LPDSGHQHNELAGPGKVFYSICPTEAFTGTTPALNRVHILQSAATSLDEII
FT                 QDDDAGPTDTLSPDSGHQHNEXPGPGKASYSICPSEAFTGTTPSLNQVHVL
FT                 QNVPTYLNAIVSDASVVHTELYFPNASEKTESPIDATTSDTGHQHQELAGP
FT                 GKALCSICPSEAKTTAPALNRDQTFQIMQSELSSTTDVDSGHQLSNSHLSA
FT                 ALSSIISVSPPPSFKKLRIYYQNVRGLRTKIDDFFLAVADLHYDIIVLTET
FT                 WLDDKIYSAQLFGDFYTVFRNDRSTLNSRKCRGGGVLIAVSSGLNCNLDPT
FT                 PVDSSLEQLWVVLSLPEQKISVGVIYLPPDRKNDMPSISKHVESIQLIQSN
FT                 LGIQDHAFLFGDYNQSALVWNYSTRNRLQINPLESHISTQCATLLDGFSLS
FT                 GLNQINGIVNQNGRILDLALVTDSALNQCELLEAVEPLVPLDADHPAFTVE
FT                 VKIPSRLIFEDMSNECGLNFRKADFIGLNEALGEIDWNIIESTPNLDDAVN
FT                 LFNHLITRTMSDYVPVRRPAPKPPWTNARLKKLKRIRSKFLRKFCRTRCPH
FT                 VKQQFDHASNNYRLYNRFLYQEYTLSIQENLRRNPKQFWSFVNSKRNENGL
FT                 PVQMFLQDNSANTSAEKCELFATHFKHAFNSCVASNDEAEATCRDVPYNVC
FT                 ELSNVQIDHQQVKAAISKLKYSTAAGSDGIPSCLLKKCANNLIRPLAFLFN
FT                 ESLRQRLFPSNWKISVMFPVFKKGDKQNVENYRGITSLCACSKVFEIIIYE
FT                 LLFASCKNYISSDQHGFYPRRSASTNLLHFSSFCIRNIDAGSQIDAIYTDL
FT                 KSAFDRVDHKILLAKLNKLGISSDLIDWFNSYLTNRKLLVKIGDESSEFFT
FT                 NPTGVPQGSNLGPLLFSIYVNELSRLLPPGCRLFYADDVKIFIVVNSIQDC
FT                 YTLQRILNSFVAWCSNNKLTISLAKCSVITFHRKLQPIVHHYTILNQHLER
FT                 VDHIRDLGVILDQAFSFRLHYEHIISKANKQLGFIFKLTSEFHDPLCLRAL
FT                 YCALVRSILESNAVVWCPYQANWISRIEAIQRKFVRQALRSLPWRDPLNLP
FT                 SYEDRCGLLGLRTLEERRCISQAVFVGKTLQGEVDSTEILGRLNIYAPERI
FT                 LRQRNFLQLEPRRAVYGFHDPIRFISARFNEVFHVFDFNISTTAFKRRLQG
FT                 SLPTLNR"
XX
SQ   Sequence 6056 BP; 1756 A; 1327 C; 1226 G; 1745 T; 2 other;
     taatgtgaat tcgtgaattt tccgcgtgac atgacatatt actggatagc gaaaatcatt        60
     ctaaatacgt gcgtcgtgaa gttatcataa ttttctgttt tctggatgtg tgatacttga       120
     ttttataatt ctgttctgat cgatccaaaa caagcgattt gcatatagca gataaagctt       180
     tgtttgtcgc ccgtggggcg aataagatgc caacaataaa tcaccgcttg ctaccatggc       240
     atcggtggtt tgcagtggtt gtgtgcataa aatcacaaca gagagcgatc gagtgtattg       300
     cttttttggc tgcgataaaa ttttgcacac taaatgtgct gagattaatt taactggagc       360
     gaaagcgttg aaagagaatc cagcacttcg ttacatctgc ttcgattgcc gcaagaatca       420
     attatctatt aatgatgttc aaagtaaatg tgagtctgtt ctgaaatccg ttaatgagct       480
     gcacagcata caaaaaagta ccattgaaag gatcgttaat ctcgagcgct ctattgctga       540
     ttcggtatca agttcttgcg aaaaagttgt ttcgaaatgc attgagaaat tattaaccga       600
     cctccgtgat tctgcttgct atgtccaaca tgctgtacct aacatcgctg ccggtccttc       660
     gtatgctgct gtggttcaaa ctggagtgcc cttatcccaa cgaactgaaa attacaaacg       720
     caaggtagct gatacttatt ctcaaaactc tgcaaagaag ctgaaaccta actctgctga       780
     tgatgacgtt gcaaatgatg agggacaatg gttgcgctcc gggaaaaggc ggaatcggat       840
     tattcagagt acacatttaa aagccacttc tgtcgaatct tcaatcagaa ctcctattgg       900
     ccgacccaag cctagccagg tgcccaaaat gaatcgtact gtagtaataa aaccgaaagt       960
     atcacaggac gtagacacga cgaaatctga gataaaaagc aatttggacc ccgtcgttca      1020
     tgccgttaaa gatgtgttct tcaacgataa tggaaatgcc atcattcgat gtgattcgca      1080
     acaatctgcc cttaaactaa ttgattctgc tcaaagttca ttgggtacca aatatgagat      1140
     aggtattcaa actgcactgc gtcctagagt taaaatcgtt ggattttctg aagttatgca      1200
     agacgaattt atttcgaagc tcataaaaca aaacaacctg cctgataacg cagagttgaa      1260
     agttgtgcga tttaccaaat ccaaaaaact gaaagacaac ccaatgtctg tcgttttgga      1320
     agtggatgcc tgcaccttta aaattttgct caacgctaag tacgtgaata ttgaatggga      1380
     acgctgtccg gtttttgaat caatcgatgt tcttcgttgt ttccgctgct ctgaatttgg      1440
     acatattgcg gccaattgta ataaaccctt ctgctgtcca aaatgtactg aatgtcatga      1500
     ggcaactgaa tgcatgtctg aatacgagaa gtgtattaac tgcactattg cgaataaagc      1560
     acaaaacgta cctgctgatc aacagcttga agtcaaccat tgctcctgga gtaatgaatg      1620
     tccggtgtat ctgaagcgtt tggaaaagtc aagacaaagg attgactact ccacatagca      1680
     gtcagaactg atgctgctga tcactcccct ttgctgtgaa tctggagctt acaatgcagc      1740
     ttattcagtc aacacgtcac ctcaaggctc aggacaccag cacaacgaac tggctggtcc      1800
     aggtaaagct ttttgcagta tatgtcctac cgaagcgttt ataggtacta ctcccgccct      1860
     caatcgagta cacatattgc agagtactgc tacttctttc gacgatatgg ttcaagacga      1920
     taaagctggt ccaaccgaca cgttgtctcc ggattcagga caccagcata acgaactgcc      1980
     tggtccaggt aaagcttcct atagtatatg tcctgccgaa gtctatttag atactgcgcc      2040
     cgccctcaat cgaatacacg cattacagaa ttcagatctc cagcaagaaa acgtagctgt      2100
     cacgttactg ccggattcag gacaccagca caacgaactg gctggtccag gtaaagtttt      2160
     ttacagtata tgtcctaccg aagcgtttac aggtactacg cccgccctca atcgagtaca      2220
     catattgcag agtgctgcta cttctcttga cgaaataatt caagacgatg atgctggtcc      2280
     aaccgacacg ctgtctccgg attcaggaca ccagcataac gaacwgcctg gtccaggtaa      2340
     agcttcttac agtatatgtc cttccgaagc gtttacaggt actacgccct ccctaaatca      2400
     agtacacgtg ttgcagaatg ttcctactta tctgaacgca attgtttctg atgcttccgt      2460
     tgtgcacacc gaattgtatt tccctaatgc ttcagagaaa acggagtctc caatagatgc      2520
     taccacttcg gatacaggac atcagcacca agagctagct ggtccaggta aagctttatg      2580
     tagtatatgt ccttccgaag caaaaactac tgcacccgcc ctcaatcgag atcaaacgtt      2640
     tcagataatg caaagcgaac tgtcttctac gactgatgtg gattctggac atcagttaag      2700
     taattcccat ctcagtgcag ctctttcgtc gatcatcagc gtttctccac cacccagctt      2760
     caaaaaactg cgtatttact atcagaatgt tcggggtttg cgcacaaaaa tcgatgattt      2820
     tttcctggct gtggcagatt tgcattatga tatcatcgtg cttacagaga cgtggctcga      2880
     cgataagatc tattccgcgc agctttttgg agatttttat accgtattta gaaacgatcg      2940
     tagcacgctg aatagcagaa aatgtagagg tggcggggta cttattgctg tttcctctgg      3000
     tttgaactgt aatcttgacc ctactcctgt cgatagctct ctcgaacaat tatgggtagt      3060
     gctgagtctt cctgagcaga aaataagcgt tggtgtcatt tatctgcctc ctgatcgcaa      3120
     gaacgacatg ccaagtatat ccaaacatgt tgaatcaatc cagctaattc aatcgaatct      3180
     cggaatacag gatcacgctt tcttattcgg tgactataat caatcagcgc ttgtttggaa      3240
     ctattcaaca agaaatcgtt tgcaaatcaa cccattagaa tcacacattt cgactcaatg      3300
     cgccacactt cttgatggat tcagtctaag cggtttaaat caaatcaatg gaattgttaa      3360
     tcaaaacggg cggattcttg atttagccct ggtcactgat tctgcattaa accaatgtga      3420
     attattagag gccgtcgaac ctttagttcc tcttgatgct gaccatcctg cgtttaccgt      3480
     ggaagtaaaa attccgtctc gtttgatttt tgaagatatg tcaaacgaat gtggtttgaa      3540
     ttttagaaag gccgatttta tcggtctgaa cgaagccctc ggagaaattg actggaacat      3600
     tatagaatct accccgaact tagacgacgc cgtgaacctc tttaatcacc tgattaccag      3660
     gacaatgtcc gattacgttc ctgttcgtag acctgctccc aagcctccct ggactaatgc      3720
     tcgcttgaag aagcttaaac gaattaggtc aaaattttta cggaagttct gcagaactag      3780
     atgcccacat gttaaacaac aatttgatca tgcgagcaac aactaccggc tatataacag      3840
     atttttatac caagaatata ccttgagcat tcaggaaaac ctgcgtcgaa atcctaaaca      3900
     gttctggtcg tttgtgaact ccaagcgtaa tgaaaacggc ttacctgtac aaatgtttct      3960
     acaagacaat tctgctaaca catccgccga aaaatgtgag ttgtttgcca cgcattttaa      4020
     gcatgctttc aacagctgtg ttgcatctaa tgacgaagca gaagctacgt gccgcgatgt      4080
     accatataat gtatgtgaat tgagcaacgt tcaaatcgat caccagcagg ttaaggccgc      4140
     catctctaaa ttgaagtatt caaccgctgc cggctcggat ggaattccat cctgtctctt      4200
     gaaaaaatgc gcaaacaatt tgatccgtcc gctagctttt ttgttcaacg aatctctgcg      4260
     acagcgtctg tttccatcta actggaaaat ttctgtaatg tttccagtgt tcaaaaaggg      4320
     cgacaagcaa aacgttgaga actaccgagg aataacctca ctatgcgcgt gctcaaaagt      4380
     ttttgaaatc atcatctacg agttgctttt tgcgagctgt aagaattata tctcttcgga      4440
     tcaacacggt ttttacccta gaaggtcagc ctcaacgaac cttttgcact tttcctcgtt      4500
     ttgcattcga aatattgatg ctggatcaca gattgatgcg atatatactg atctaaagtc      4560
     ggcgttcgac cgagttgatc acaagatatt acttgccaaa ctgaataagt taggaatctc      4620
     atcagacctt attgattggt tcaattccta tctcacgaat cgcaagctgc tagttaaaat      4680
     aggcgatgag tcgtcggaat tcttcactaa tccaactggc gttcctcaag gaagtaattt      4740
     gggacctctg ctgttttcaa tctacgtgaa tgagctttca agattgctac caccgggctg      4800
     tcgattgttt tatgcggacg acgttaagat tttcattgta gttaacagca ttcaagattg      4860
     ttacacactc caacggattt taaactcatt cgtagcatgg tgctccaata ataagctgac      4920
     aatcagccta gctaaatgca gcgtgataac atttcacaga aaattgcaac caattgttca      4980
     ccactataca atactgaatc aacatctgga gcgcgtcgac catatccgag atctgggagt      5040
     tatactcgat caggcatttt ctttccgtct acattacgaa cacatcatat ctaaggccaa      5100
     caaacaactc ggcttcatct ttaaactaac cagcgagttc catgatcctc tatgtttgcg      5160
     ggcattatat tgtgcactag ttcgctcaat tttggaatct aatgctgttg tatggtgccc      5220
     atatcaggcg aactggatct ccagaatwga ggccatacaa agaaagtttg tcaggcaagc      5280
     gcttcgaagc cttccatggc gtgacccgct aaacttgccg tcgtacgaag atcgttgcgg      5340
     actactcgga ctgcggacat tagaagaaag gagatgtatt agccaagcag tgtttgttgg      5400
     aaaaacattg cagggagaag tcgactctac cgaaatttta ggacgattga acatctatgc      5460
     tcctgaaaga attctacgcc agcgcaactt tctacagctt gagccacgcc gtgcagtata      5520
     tggctttcat gacccaatcc gtttcatatc tgccagattt aacgaagtat ttcacgtatt      5580
     cgactttaac atctctacaa ccgcgtttaa acgccgatta caaggctcat taccgacttt      5640
     gaacaggtga gttcctctcc aacaactcta aaggttgtaa atggtgctac cagatgtttt      5700
     ttttttctct cattctcgat tacaattgtc gccgagtctt gaccagagat catcgtaatg      5760
     tttcctgtag accacgatgt ttggatggat ggatgatgca cgaatagttt ttaggtttta      5820
     tgatgattga caatgtttgt agaaaagtaa ttgtgatcgt attgtattta atgactttgt      5880
     ttataattgt tactgacagt gattgtaatg tttatgtaga aaagatatga ggtttttacg      5940
     cctttttgag caagtcgcga gttgttggtc tactcaaatc ggcttttcct catcaaacgc      6000
     ttcattaagc aaaagcagat gaagctagaa accaaataaa caaataaaca aataaa          6056
//
ID   CR1-52_AAe  repbase;    DNA;    INV; 5580 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-52_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5580
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1139-1139 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2409..5492
FT                 /product="CR1-52_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEFANIIFLTFGQPAITGRPGPACGQGKGVFQITLNG
FT                 KYTSALNNSAADEISDSSLSTFQQPQSTNQRESSEIAVYFQNVRGVRTKVD
FT                 ELFLATCDCDYDVIILVETGLDECINSLQLFGTSYNVYRCDRCALNSRKSR
FT                 FGGVLIAVAHQYISSMIDLRNGKTLEQICVSTVIKGQRINFLAVYIPPDRS
FT                 QDVSSVEAHIASVQELCGGSSFNDTIIVCGDYNQPRLSWTRTIEGICYDSS
FT                 TSLPPAAAALVDGFDFLNLMQANVEHNYLGRVLDLVYSSPDKDIKVTRAVS
FT                 PLLPIDAHHPPLEVAVAVPCLRQSLTSHCETRRLNYRRIDFEALSEYLSNV
FT                 DWTVMFRNIDDVDDISMHFCDVLCTWLNENLPLVRSPAKPPWGNSELRRLK
FT                 RKRNTTQRLLRKHRSHANQLAFKLASDAYRQMNAVLYKSYVTRTQFGLRKD
FT                 PRSFWSFINSKRKCSSIPSNVFLDDSESSSVQESCELFAKHFASVFSCHIT
FT                 SQSEANEAASNIPVDAVEMDIFEISSDMIVAASKKLKNSYSPGPDGVPAII
FT                 FRRCAGSLASPLSHIFNKSFEQKKFPAVWKQSLMFPVHKKGDKRNVRNYRG
FT                 ITSLSAGSKLFEIIVSNAILNATKSYISPNQHGFMPGRSVTTNLIEFTSTC
FT                 ISQIEGNAQVDAVYTDLKAAFDLIDHRILLSKLSRLGASERFTMWLESYLS
FT                 NRVLRVKLESCVSGMFSSSSGVPQGSNLGPLLFVIFFNDVTLLLGSKCVLV
FT                 YADDLKIYLVVKTREDCIRLQELLDTFVEWCRLNRLVVSVAKCLVITFHRS
FT                 KCPIAFDYCIDGNVLERVDQVSDLGVVLDAKLTFNHHITSIITKATRQLGF
FT                 ITKVSRDFTDPHCLKALYCALVRPILENAAVVWTPYHLSWIIRIERVQRRF
FT                 IRIALRDLPWRDPQNLPPYGERCRLLGLDTLQRRRQFQQATFVANILTGEI
FT                 DASALLSRIEFRAIGRQLRSSSLLMTRFHRTSYGFHEPLTSCVRTFSLVDN
FT                 LFDFGERPSSFRRRLERSRMFY"
FT   CDS           join(314..652,618..1127,1040..1639)
FT                 /product="CR1-52_AAe_1p"
FT                 /translation="RRLMSMEKNCAKCNQTISGIDYVACRGYCGCTFHMQC
FT                 SGVSRALMNYFTTHRKNLFWMCNDCAALFENSHLRSITKEVDENSPLASLT
FT                 EAIGNLQKEIKQLIKTSFIWHITGGSKPASSGISPAVRRWPQIETVRAAKR
FT                 PRGPDFAQTVSECRTGSKQVGQNVISVPTTAKPETKFWLYLSRIRPDVTNE
FT                 EMSAMVRANLELSQDPEVVKLVAKGADITNMSFISFKIGLDPALKPIALDP
FT                 LSWPEGLMFREFEDYSVPKFRKPSITNLTPTLTKTPEVPMEPGLFRSKISE
FT                 TIHYKPDSNVNENSRSSNGAINDNSRSFNFDVRESESHLKSLSHHSFLDVS
FT                 PTPGCTAACIMEDPILPSTVVPLLPAINSRPGRVSGCGDGFFQAALSGKYN
FT                 LSLCNTTSDALTVFSTQPASSPPSTPLMSNSTSKTLGRINSSIMEALKPSA
FT                 AVEPFQPAITSRPTVAASHTNAGQKYNSHLKRSQMLII"
XX
SQ   Sequence 5580 BP; 1574 A; 1194 C; 1153 G; 1659 T; 0 other;
     tctggcatcc ctgccgagta acttaattga acttttacta tcgatttttt tttcgccgtt        60
     ttaatgtgtt aacagcgtgt ttaatttttt tattctttga ctactaattg atattgtgaa       120
     gtccgtatac ggtagtcatt tagttgttgt gatttctgta ctgatttgat aattattcgc       180
     tagttttgtg atcaccgttt gttccgtcca tcgtaataca tacgtgcgca tcaaaacaat       240
     taccgtataa attcgagcaa attttgtcac cgttgtgctg ctgcttacgt tgtaacgttt       300
     gttgcctact tgaaggcgat taatgagcat ggagaaaaat tgcgccaagt gcaaccaaac       360
     cataagtggt attgattacg tcgcttgtcg tggatactgt ggttgcacat tccacatgca       420
     atgttcaggt gtctcacgtg cacttatgaa ctatttcacg acgcaccgca aaaatctttt       480
     ctggatgtgc aatgattgtg ccgctttatt cgagaactcg catcttcgct caattacgaa       540
     ggaggttgac gaaaattcac cgctggcgtc actcacggaa gcaatcggaa atctacaaaa       600
     agaaataaaa cagttaatca aaaccagctt catctggcat atcaccggcg gttaggcgtt       660
     ggccacagat tgaaactgtt cgagcagcca aacggcctcg tgggccagat tttgcacaaa       720
     cggtatcaga gtgtcgtact ggctctaaac aagttgggca gaatgtaatt tctgtcccta       780
     ctactgcaaa accagagact aagttctggc tctacttgtc tcgcattcgt cctgatgtta       840
     ctaatgagga aatgtcagca atggtacgag ccaacctgga actgtcccaa gatccggaag       900
     tggtgaaatt ggtggccaaa ggagcagata tcaccaatat gagcttcatt tccttcaaaa       960
     ttggcctgga tccagctttg aagccgatcg ctctagatcc attatcctgg ccggaaggtc      1020
     tcatgtttcg tgagtttgag gattattccg ttccaaaatt tcggaaacca tccattacaa      1080
     acctgactcc aacgttaacg aaaactccag aagttccaat ggagccataa atgacaactc      1140
     aaggagtttt aatttcgacg tgcgtgaaag cgaatctcat ctgaaaagcc tgtctcatca      1200
     ttctttcctc gatgtttcac cgacaccggg atgcactgcg gcatgtatta tggaagaccc      1260
     tatcctaccc agcacggtcg tgcctttgct gcctgcgatc aacagtcgtc ccggacgcgt      1320
     gtctgggtgt ggagatgggt tcttccaagc cgctctctca ggcaagtaca atctcagttt      1380
     gtgcaataca acttctgatg ctttgaccgt ttttagcacg caaccggcat catcaccgcc      1440
     atcaacacca ttaatgtcca actctacctc taaaacactg ggacgcatca actctagtat      1500
     aatggaagcc ctgaagccct ccgccgcagt cgagccattc cagccagcga tcaccagccg      1560
     tcccacagtg gccgcatccc atacaaatgc tggccaaaag tacaattctc acttaaaacg      1620
     ttcacagatg cttattattt gacaaaacat ggtttttaga ggtaatttga tacaaatagc      1680
     cgctgaacca gaaaatcgat atttccggta cattagtgaa ttagtttaaa atagcacatt      1740
     ttttcaattc aataaatgaa atccgtattc aggttacaat taaatgaagc gtcattattt      1800
     cgatgctaat ttgaagttca atatcgtggg caagctcgag gtggttttta aatctattgg      1860
     ggagcatata atggtaaaaa atgcgatatt tataacaagt atgatggtct aatgggctaa      1920
     ttcgtagtgt aactaaaaaa tatttgttta tatcttggcg caaaaaagcg caagtgaagc      1980
     catagtacat cgaatactat ggaatatttg ccacacattg aggggtaaat gatcgtttta      2040
     gagcgtttcc cagatatctt gcactacttt tgaaaaaatg ccttattttt gaaggagctc      2100
     tatattatac acttcttgac attctcaaat ggtaaacatc taaaatatgg ttcgaaatat      2160
     cttcaaaaca aagcctaagg tatattcttt tgaatgagac cggttgagaa tgatttggtt      2220
     atgatttagt acagaaactg caatttctac agaacgaact tcacgaaatt tgaaaaaatt      2280
     aaaagggtaa atttcagcta acatctctac aggtcacatg ctgtgaaaaa tcgaaatata      2340
     taccgatcga tctgaaactt tgggaaattg ttattcaata ctgaagaaat caagaaaaaa      2400
     tattcgagat ggaatttgcc aacatcattt ttttgacttt tggccagcca gcgatcaccg      2460
     gccgtcccgg tcctgcgtgc ggacaaggca aaggggtctt ccaaatcaca cttaacggca      2520
     agtacacatc tgcattgaac aattcagctg ctgatgagat ctccgattcc agcttgtcca      2580
     cgtttcaaca gccgcaatca acaaatcagc gggaatctag cgaaattgca gtatacttcc      2640
     aaaacgtacg tggagtaagg acgaaagtcg atgaattgtt tcttgctacc tgtgactgcg      2700
     attatgatgt cataattttg gtggagactg gccttgatga atgcatcaat tcattgcagc      2760
     ttttcggtac ttcttacaat gtgtatcgtt gtgatcgatg tgctttgaac agtcgtaaat      2820
     cgcgttttgg gggtgttctt attgctgttg ctcatcaata catcagctcg atgatcgatt      2880
     taagaaatgg caagacattg gagcaaatat gcgtatcgac cgtcatcaaa gggcaaagaa      2940
     tcaatttttt ggctgtctac atccctcccg acagaagcca agatgtttcg tcagtagaag      3000
     cgcatatcgc ttctgtacaa gagctttgcg gcggatcgtc tttcaacgat acaataattg      3060
     tatgtgggga ttacaatcaa ccacgcttat cctggacaag aacaatagaa ggaatatgtt      3120
     acgatagttc cacttcgctg cctccagcgg ctgctgctct ggtcgatggc ttcgatttcc      3180
     ttaatctaat gcaagcaaat gtagaacata attatcttgg tagagtgctt gacctcgtgt      3240
     actcctcgcc tgataaagat atcaaggtaa caagagcggt ttctcctttg ttgcccattg      3300
     atgcacatca tcctccactg gaagttgcgg ttgctgttcc gtgtttgaga cagtcactca      3360
     cctctcattg tgaaactcga cgtttaaact atcgtcgaat tgactttgaa gctttatcag      3420
     agtatttatc gaacgttgat tggactgtta tgttccgtaa tattgatgat gtggatgaca      3480
     tctccatgca tttttgtgat gtcttgtgca catggctcaa tgagaacctc cctctagtaa      3540
     gatctccagc aaaaccacct tggggcaact cggagttacg cagattgaaa cgtaaacgga      3600
     atacaacaca aagattattg cgaaagcatc gatctcacgc taaccaattg gcgttcaaac      3660
     tagctagtga cgcataccgt cagatgaacg ctgttctcta taagtcttat gtcacacgca      3720
     cacaatttgg cttgcgaaag gatccgagaa gcttttggag ctttattaac tcaaaacgta      3780
     aatgttcatc tatcccatct aacgtttttc ttgacgattc ggaatcatca tcagtgcaag      3840
     agtcctgtga attgttcgcc aaacactttg catctgtttt ttcctgtcac ataacatctc      3900
     aatcggaagc aaatgaagct gcatctaata ttcctgttga cgctgttgaa atggatattt      3960
     ttgaaatttc ttccgacatg atcgtggctg cttcaaaaaa gctgaaaaac tcctactcgc      4020
     ctgggccaga tggtgtacca gccattattt ttcgtcgttg cgctggttct ttggcttccc      4080
     cgctttctca tattttcaat aaatccttcg agcaaaagaa attccctgct gtgtggaagc      4140
     aatcgctaat gtttcctgtg cacaagaaag gagataaaag gaatgtaaga aactatagag      4200
     gcattacaag tctatctgca ggatcgaagc tttttgaaat aattgtgagc aatgccatcc      4260
     ttaatgctac caagagctac atttcaccca atcaacacgg atttatgccc ggccgttccg      4320
     ttactaccaa tctcatagaa tttaccagca cctgtatatc gcagattgag ggaaatgcac      4380
     aagtggatgc agtgtacacg gatttgaaag ctgcctttga tttaattgat caccgaatac      4440
     tgctgtctaa gctgtcccgc ctaggtgcat ctgagcgttt tacgatgtgg ttggaaagtt      4500
     acctttcgaa tcgagttctg cgagtcaaac ttgaatcgtg cgtttccggt atgttcagca      4560
     gcagttcagg cgtcccacaa ggcagcaatt tgggcccttt gctatttgta atatttttca      4620
     atgatgttac cctactgcta ggatcaaaat gtgtgctggt atacgccgat gatttaaaga      4680
     tttatctggt agtcaagaca agagaagatt gtatccgact tcaagaacta ctggatactt      4740
     tcgttgaatg gtgtaggtta aatcggctcg ttgttagcgt cgctaaatgc ttagtgatca      4800
     cgttccatcg atcgaagtgt ccaatcgctt tcgattactg tattgacggt aatgtcctcg      4860
     agcgcgttga tcaagtcagc gatttgggcg ttgttctaga cgcaaaacta acattcaacc      4920
     atcacatcac gtcaatcata actaaagcaa cacgacaatt gggctttatt acgaaagttt      4980
     ctagggattt tactgatcct cactgcctca aagcactata ttgcgctttg gttcgaccaa      5040
     tccttgaaaa cgctgctgta gtgtggactc cttaccatct ctcgtggatc atcaggattg      5100
     aacgtgttca acgtaggttt atccgcattg cgctcagaga tctaccctgg agagacccgc      5160
     aaaatctccc gccctatggc gagcgttgtc ggcttctagg actcgataca ctgcaacgac      5220
     gccgacagtt ccagcaagct acatttgttg ctaatatttt gaccggtgag attgacgctt      5280
     cagcacttct atcccgcatt gaatttcgag ccattggtag acagctgcgg tcctcttctt      5340
     tattgatgac cagatttcac cgaacatcgt atggttttca tgaaccgctt acctcatgtg      5400
     tccgaacatt ctctttagtg gataatttgt ttgattttgg agaaaggcct agttccttca      5460
     gaagaaggct ggaaagatca agaatgtttt attaatagta attaggtttt agtcttaagg      5520
     aaattcatgg agactactgt cagatgaaaa agataataat aaataaataa ataaataaat      5580
//
ID   CR1-53_AAe  repbase;    DNA;    INV; 4596 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-53_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4596
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1140-1140 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..1030
FT                 /product="CR1-53_AAe_1p"
FT                 /translation="MSACDRCAKSIKRADDVITCMGFCEHIVHLRCTNFEK
FT                 SIAKAISDSQNLFWMCDECTKLMKIVCFQNAISSVGNSINELTKNQEAANA
FT                 ELKSVLAKHSEQIAQLSSRIQSTTPTIADSVSRRAMKRRRTEELAPIAKPL
FT                 LGGTKSTDDVSIATVPPPTPLFWIYLSRLHTSVKPDIVEKLTKDSLHCESA
FT                 KAVPLVKQGTDINSLNFISFKVGVDPKYRLSALDPSSWPKGILFREFEDNR
FT                 AKNLWMPDPCSPSIIVTDSLETPQHAPSSMITADC"
FT   CDS           1034..4537
FT                 /product="CR1-53_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="HQGARCTASVGASGSSNTVVPYTHCLAPPASISCRPS
FT                 RPGPVFGSKSEVSQLNTPGKYDFIRTCCLPDSFTTSSCYRVHDAMFSSPGN
FT                 AAFNTPCHISVGPSASTTSSTCIRKTGRLQPSLMEVPRPSTAVELVPGFPD
FT                 NPACVSCHQSRPVPACRSGQGVFQTPSSGEFLSCNASTAPDGLPTPRSHSG
FT                 SPPSSTRNTSGFFHARHQECSSPPLQHVTVYYQNVRGMRTKTTDFFLITAT
FT                 CDYDIIILTETWLHPDIQNSELTSNYTIFRCDRNKQTSSLQRGGGVLIAVK
FT                 SALRCSSITLTDCNSLEQVAVSVILPETTIHLCGIYIRPTSPPEVYTTHAS
FT                 AVKKICDLSCVSDTIVVVGDYNLPGLSWFLDDDLNSYLPSNASSEAETTFA
FT                 EMMISTGLHQVNSLLNTNDRLLDLAFVSDAGEVEVLDPPTNLLRLDAHHKP
FT                 FVLRIEVTNNRHLTRPESNSELSFDFNRCDFVTLNQILSSINWYDLLSNES
FT                 SDEAVALFYTKLFDVFRDAVPYKRKRLNLAPKLPWWSPELRHLRNVLRKAR
FT                 KRFFRSRSNEDRENLKSLEARYNECQNLYFQNYINRVESNLKHNPSSFWSY
FT                 VKTRKSRNHLPEQMCYCGSSAANGNESADLFANFFSSVYSTNCPTLSAATR
FT                 QCIRTHDVNLPLHSVTEQDVRAELIKLDADKGAGTDRLPPIVLKECAESLK
FT                 TPISIIFNRSLNEKKFPTVWKTSSITPIHKSGNYTSVENYRGISIICCVAK
FT                 VFEKIIHSVLYNATRHLISDRQHGFMKKRSTVSNLMCYTNFLSREIENRKQ
FT                 VDTVYFDFRKAFDKVPHSLAIEKLEHMGLPVWITEWLRSYLSDRKAFVKFG
FT                 NSQSRVFDTTSGVPQGSVLGPLIFVLFINDLSVRLKSTMLLYADDLKMYRI
FT                 ISSTLDCCELQADIDELHLWCLENGMQLNISKCKTITFTRRLSCFPFEYKI
FT                 NGICLDRVNTINDLGVIIDSKLKFNEHINIITAKALSVLGFVRRNSQLFHD
FT                 VYTLKTLYCSLVRSILEHAACVWSPYHTTLEIRIEKVQRSFIRYALRSLPW
FT                 NDPQNLPHYESRCKLIDLETLSRRRTKLKQMFVFDLITGNIDCSALLNDVM
FT                 FFAPSRNLRGRYLLTTGAHRTSYGQNSPFTSCIQCFNDVNDQFDFNVSKTI
FT                 FKRRIKNIR"
XX
SQ   Sequence 4596 BP; 1273 A; 1148 C; 906 G; 1268 T; 1 other;
     gctttgtacg cgttttatgc tttaattgcg tgtgttttta tgcctatgtg tccacctgta        60
     gtgatataat atcacttttc gtcagtgcat cttacaatat ccagctcatt taacaacaat       120
     agacatctgc ctaccgctaa ctgacatcaa cccaacctgt gatatatatt gtggtgccgt       180
     aatcataaac aaaatcatcg atatgtcagc ttgtgatcgt tgtgcaaaat ccatcaaacg       240
     agccgatgac gtgattacat gcatgggatt ctgcgagcat atcgtccatc tcagatgcac       300
     caacttcgaa aaaagtatcg ccaaagccat atccgactca caaaatttgt tctggatgtg       360
     tgatgagtgc ackaaattaa tgaagattgt ttgcttccaa aacgctatct catctgtcgg       420
     aaattcgatc aacgaactga ccaagaatca agaagcggct aatgctgaat taaaaagcgt       480
     gttggcaaaa cacagtgaac aaattgccca actttctagc cgcattcaat cgaccactcc       540
     aacaattgcg gactctgtca gtcgtcgtgc aatgaaacgc cgacgcactg aggaattggc       600
     cccaatcgct aaacctttac tcggaggaac aaaatctacc gatgatgtta gtattgctac       660
     agtgcctcca ccaacccctc tgttctggat ctatctgtct cgtttacata ccagtgtgaa       720
     gcccgacatt gtggaaaaac taacgaaaga cagtttgcat tgtgagtcag ctaaagcagt       780
     tccattggtt aaacaaggca cagatatcaa ctccttgaac ttcatatcgt tcaaagttgg       840
     tgtcgatccc aagtaccgcc tttcagctct tgatccatca tcttggccga aaggaatcct       900
     gtttagagag ttcgaggaca atcgtgctaa gaacttatgg atgccggacc cttgttctcc       960
     gtcgataatt gtgactgact cattggagac cccgcagcat gctccctctt ctatgatcac      1020
     tgccgactgc tgacaccagg gcgcacgatg tacagcttca gtgggagcct ctggttcatc      1080
     caacacagtc gtgccataca cccattgtct cgctccgcca gcttcgattt cctgccgtcc      1140
     aagtcgccct ggccctgtgt ttggatccaa atcagaggtc tcccaactca ataccccagg      1200
     caagtatgat ttcatcagaa cgtgttgcct tcctgacagt tttaccactt ctagttgcta      1260
     ccgtgttcac gatgcaatgt tctcatcacc tgggaatgca gctttcaata caccctgcca      1320
     cattagcgtc gggccttcag catcaacaac gtcatcaaca tgcattcgaa aaacggggcg      1380
     cctgcagcca agtcttatgg aagtccctag accctctacc gcagtcgagc tagttcctgg      1440
     ctttccagac aatccagcgt gtgtttcctg ccatcaaagt cgccccgttc ctgcgtgtag      1500
     aagtggtcaa ggggtcttcc aaactccttc ctctggtgag tttttaagct gcaatgcatc      1560
     taccgcccct gatggtcttc ccactcctag gtcgcatagt ggatccccac catccagtac      1620
     cagaaacaca tcgggctttt tccacgcacg acatcaagaa tgtagcagtc cgcctctaca      1680
     gcacgtgacc gtttattatc aaaatgttcg aggcatgcgc acaaaaacca ctgacttttt      1740
     cctgatcacg gcaacttgcg actacgacat tattatactt acggaaacct ggctgcaccc      1800
     cgacatacaa aactccgagc tgacttcaaa ttatacaatt ttccggtgcg atcgcaacaa      1860
     gcaaaccagc tctcttcaac gtggcggcgg cgtgctaatt gcagtgaaat ctgctcttcg      1920
     ttgttcatct attactttaa ctgactgtaa ttccttggaa caagtcgctg tctctgtaat      1980
     actaccggag acaacgattc atctctgtgg tatttacata cgacccactt ctcctcctga      2040
     agtttacaca acgcacgcat cagctgttaa aaaaatttgc gatctttctt gtgtatctga      2100
     cacgattgtg gttgttggag actataatct gccagggcta tcctggtttc tcgacgacga      2160
     tctgaatagc tatctacctt ccaacgcttc atccgaagca gagacaacat ttgccgaaat      2220
     gatgatttct acgggactcc atcaagtcaa ttccttgctc aatacaaacg atcgcctcct      2280
     cgatttggct tttgtaagtg atgctggcga agtagaagtg cttgatcctc caacgaatct      2340
     gttacgtctg gatgcacatc acaaaccctt cgtacttcga attgaagtta caaacaaccg      2400
     tcacctgacg cgtccagaga gcaacagcga actcagtttt gattttaacc gctgtgattt      2460
     cgtaacattg aatcaaattt tatcatcgat caattggtat gatttgctta gtaatgaatc      2520
     atctgacgaa gcagtggcac ttttctacac caaactgttt gacgtttttc gcgatgctgt      2580
     tccatacaaa cgcaagcgtc ttaatctagc acccaaactg ccgtggtggt cacctgagct      2640
     ccggcatctc cgaaacgttt tgcgtaaggc ccgaaagcga tttttccgtt caaggtccaa      2700
     cgaagatcgt gaaaatctca agtctcttga agcgcgctat aacgagtgtc aaaacttgta      2760
     ttttcaaaac tacataaatc gagtggaatc aaatttgaaa cacaacccgt ccagtttttg      2820
     gtcttatgta aaaactcgta aatcgcgcaa tcatctaccc gaacaaatgt gttactgtgg      2880
     atcgtccgct gcaaatggca atgaatcggc tgaccttttc gcgaactttt tcagcagcgt      2940
     atacagtaca aattgcccaa cactctctgc agcgactcga caatgtattc gtacacatga      3000
     tgtgaactta cctctccata gtgtaacgga acaagatgtc agggcggagc tcataaagct      3060
     tgatgctgac aaaggcgctg ggacggaccg tctacctccg atagtcttga aagaatgtgc      3120
     agagtctctg aaaacaccca tcagcataat cttcaatcga tctctcaatg agaagaaatt      3180
     ccctactgtt tggaaaactt catcgataac tcccatccac aaatctggaa actacacctc      3240
     cgtggaaaac tatcgcggta tctccataat atgctgtgtc gccaaggtat ttgagaagat      3300
     aatacattcc gttttgtaca acgctacccg gcacttgatt tcggaccgac aacacgggtt      3360
     catgaagaag cgttcaacag tgtccaactt gatgtgttac accaacttcc tttcaagaga      3420
     aatcgaaaac cgcaaacaag tagacacagt gtatttcgac tttagaaagg cttttgacaa      3480
     agtcccgcat agtcttgcaa tcgagaaact tgagcacatg gggcttcctg tctggatcac      3540
     cgagtggctt cgctcgtatt tatctgatcg caaagctttc gtcaaatttg gcaactcaca      3600
     atcacgcgtt ttcgacacaa cctctggagt cccgcagggc agtgttctag gaccgttgat      3660
     tttcgtgctt ttcatcaacg acctgtccgt tcgtctaaaa tcaacgatgt tattgtacgc      3720
     tgacgatctt aagatgtata ggataatttc ctcgaccttg gactgctgcg agctccaagc      3780
     tgacatcgac gaacttcatc tctggtgttt ggaaaatggt atgcagctta acattagcaa      3840
     atgtaaaacc atcactttca cacgtcgcct atcctgcttt ccatttgaat acaaaatcaa      3900
     tggtatttgc ttagaccgtg tcaatacgat taacgacttg ggtgtcatca ttgatagtaa      3960
     gctgaaattc aacgaacata tcaacatcat aacagccaaa gcgttgtcag ttcttggttt      4020
     tgtacggcgt aattcacaat tatttcacga cgtgtacacg ttgaaaactt tgtattgctc      4080
     tttggttcgg agcattctgg aacatgctgc atgtgtttgg tcgccttacc atacaacact      4140
     ggaaattcgc attgagaaag tacagcgaag ctttattcgt tacgccctca gatcgcttcc      4200
     atggaatgat ccgcaaaatc ttcctcatta tgagagccgc tgcaaactga tcgatctcga      4260
     aacactatca cgaagacgaa ctaagttgaa acaaatgttc gtatttgacc tcataaccgg      4320
     aaacattgac tgctctgctc ttctcaacga tgtaatgttc tttgcaccga gccgaaattt      4380
     acgtggaaga tatctcttaa cgacgggtgc acaccgcacc agttacggtc aaaacagtcc      4440
     cttcactagt tgcatccagt gcttcaatga tgtaaacgat caatttgatt tcaacgtgtc      4500
     caagacgatt tttaaacgta gaattaagaa tattagataa taagaacagt ctgtgggaca      4560
     ttaaaggaat ccaagacggt gtcaaataaa taaata                                4596
//
ID   CR1-54_AAe  repbase;    DNA;    INV; 2808 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-54_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2808
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1141-1141 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity. The consensus is likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2749
FT                 /product="CR1-54_AAe_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="WLRPDVLNSELCSNYTIFRCDRSEQTSSFQRGGGVLI
FT                 AVKASFRCTSVSLNDCDSLEQVVVSVNLPMSTIYLCGIYIRPASPPEAYSM
FT                 HATAIQSICNFSSETDAIIVVGDYNLPGLSWIYDDELNSYLPCNASTEAEM
FT                 TFVEAVMATGLYQVNSIRNVNNRILDLAFVSDVCDIEVLEAPSYLLRMDAH
FT                 HKPFVLRVQIWETRNNSSSDSNDEADFDFSLCDFESLNASLSTINWTNELA
FT                 NKGTDEATAHFYDKLYDVLHSNVPRKRLRPKQKGKLPWWSPELRRLRNGVR
FT                 KARKRYYRSKSPVARQNLHVIESRYNECKVFTFRNYINTIESNLKNNPNSF
FT                 WSFVKSRKSNNRIPEQIRFQDRTSANVDESANLFADFFSSVNSTISPTLST
FT                 ATRHSIPTHDITLSFLNFTEQDVKTALTSLNVKKGAGADRLPPSFWKECAE
FT                 SMKLPISLIFNRSLADRKFPAVWKTASVVPIHKSGSINSVDNYRGISILCC
FT                 IAKVFESMMHMVLYNATRHLISDSQHGFVKKRSTVSNLMCYTNFLSSEIER
FT                 RQQVDAVYFDFSKAFDKVPHDLAIKKLDRMGLPDWITEWLRSYLSGRKAFV
FT                 RIGDTQSRGFDITSGVPQGSVLGPLIFVLFINDLSYRLKSCKLFYADDLKI
FT                 YRAITSVIDCYALQSDVNELLLWCSENGMQLNNSKCKCITFTRRLSSISFN
FT                 YEINGSIIDRVTTINDLGVTIDSKLKFSKHVSVTTAKAFSVLGFIRRNSQA
FT                 FQDIYTLKTLYCSLVRTILEYAACVWSPYYTTQVLHIEKVQRSFLRYALRS
FT                 LPWNDPVNLPDYESRCMLLNMETLSFRRTKLKRMFLFDLITHNIDCSDLLA
FT                 EVGFLAPSRYLRSRQLLAPRTHRTAYGQNSPLTSCIRSFSIVNDVFDFNQS
FT                 RVEFKRRISSIR"
XX
SQ   Sequence 2808 BP; 775 A; 654 C; 572 G; 806 T; 1 other;
     atggctccgt cctgacgtac tsaactccga actctgttcc aattacacaa tattccggtg        60
     cgatcgcagt gaacagacaa gctccttcca acgtggtggt ggtgtactta ttgcagttaa       120
     agcttctttt cgttgtacat cggtctcttt gaacgactgc gactcccttg aacaagttgt       180
     tgtctcagtt aatcttccaa tgtcaacaat ctatctttgt ggcatttaca ttcgaccggc       240
     ttcaccacct gaagcgtact cgatgcacgc aactgcaata caaagtattt gcaacttctc       300
     ttccgaaacc gacgcaatca ttgtagtcgg cgactataat ctaccagggc tttcttggat       360
     atatgatgac gagcttaata gctatctacc atgcaatgcg tcaactgaag ctgagatgac       420
     ttttgttgaa gcggtgatgg ctacaggact gtaccaagtc aactcaatac gtaacgttaa       480
     taatcgtatt cttgatttgg cttttgtcag tgatgtctgc gatattgaag tgttggaggc       540
     accatcttat ctcttgagaa tggatgctca tcacaagcct ttcgttcttc gagtacaaat       600
     atgggagaca cgcaacaatt catcttccga cagcaatgat gaagcggatt tcgacttctc       660
     gctttgcgat tttgaatcgc taaatgctag tttatcgacg atcaactgga cgaacgaact       720
     ggcaaacaaa ggcactgatg aagcaactgc tcacttttac gataagctgt acgacgtttt       780
     gcatagcaat gtccctcgta agcgtttgcg tcctaaacag aagggcaaac tgccgtggtg       840
     gtcacctgaa ctgagacgtc ttcgaaacgg tgttcgtaag gctcgcaagc gctattatcg       900
     ctccaaatcg cctgttgcca gacaaaatct tcatgtgatt gaatctcgtt acaacgaatg       960
     caaagtcttc acgttccgta attacatcaa tacaatcgaa tcaaatttga agaacaaccc      1020
     gaatagtttc tggtcattcg tcaagagccg taaatcgaat aatcgcatac ctgagcaaat      1080
     acgttttcaa gacaggacgt cagcgaatgt ggatgaatcg gccaatctat tcgctgattt      1140
     tttcagcagt gtgaatagca ccatctcccc aactctctcc actgcaacgc gacattctat      1200
     tcccacgcat gacataacgc tgtcattcct aaattttacc gaacaagacg tgaaaactgc      1260
     actaacgagc cttaatgtta agaaaggcgc tggagctgat cggcttcccc cttcattttg      1320
     gaaggagtgt gctgaatcta tgaagctgcc aataagccta attttcaacc gatctctcgc      1380
     tgacagaaag tttcctgcag tttggaaaac ggcctcagta gtcccgattc ataaatctgg      1440
     cagtatcaat tctgtcgaca actatcgtgg aatatcaatt ctttgttgca ttgccaaagt      1500
     ttttgaaagc atgatgcaca tggtcctgta taatgccact cgacacctga tatccgactc      1560
     ccaacacgga ttcgttaaga aacgatccac agtttcaaat cttatgtgct acaccaattt      1620
     tctttcatcg gaaatcgaac gccgtcagca agtggacgct gtgtacttcg acttctcgaa      1680
     ggcatttgac aaagtccccc acgatcttgc tatcaagaag ttagaccgaa tggggctgcc      1740
     cgactggatc acagaatggc ttcgttccta cttgtccggc cgcaaagcct tcgtcaggat      1800
     cggagacaca caatctcgtg gttttgatat cacctccggt gtcccccagg gcagcgttct      1860
     aggcccactt atatttgtac tgttcattaa cgatctgtcc taccgtttga aatcgtgcaa      1920
     gctcttttat gctgatgacc ttaagatcta cagagctatc acctcagtca tcgactgcta      1980
     tgctctacaa tctgacgtca acgagctgct tctatggtgt tcagaaaatg gaatgcagtt      2040
     gaacaacagc aaatgcaagt gcataacatt tacacgccgt ctttccagca tctctttcaa      2100
     ctatgaaatc aacggtagta tcatcgaccg agtgacgacc attaacgatt tgggtgttac      2160
     cattgacagt aaactgaaat tcagcaaaca cgtgagcgta accactgcta aggctttctc      2220
     tgttcttggg ttcattcggc gtaactcaca agcgttccaa gatatctaca ccctaaagac      2280
     attgtattgt tcattggtgc gaaccatact ggaatacgct gcctgtgtgt ggtcacctta      2340
     ttacactact caggtgctcc acattgagaa agtacagcgt agctttcttc gttatgcact      2400
     caggtcacta ccgtggaacg accctgtcaa tcttccggac tatgagagtc gctgcatgtt      2460
     gctgaatatg gaaacactgt catttaggag aaccaaatta aagcgaatgt ttttatttga      2520
     tttgattacg cacaatatcg attgtagcga tttattagcg gaagtagggt ttctcgctcc      2580
     aagccgttat ttacgtagtc gccaactctt ggcacctaga acgcatagaa ctgcctatgg      2640
     tcagaatagc ccacttacta gttgtattcg tagttttagt attgtgaatg atgtgttcga      2700
     ttttaatcag tccagagttg agtttaaacg tagaataagt agtattcgat aagtaaatca      2760
     gtctgtagga aatttatcca agacgttgca aataaataaa taaataaa                   2808
//
ID   CR1-55_AAe  repbase;    DNA;    INV; 4462 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-55_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4462
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1142-1142 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..931
FT                 /product="CR1-55_AAe_1p"
FT                 /translation="MAPAHELGGLLRSGRRRNNPVNSNTAIPSTPVMSPIP
FT                 PDPATPRTQQAKSNAVAKLEQTVLFKPKKNQSAEKTKDDISAKFDPVAFAV
FT                 KDVWLRDFGEVAVRCGSKDLALKMVSSASTVCAEKYIIEMQKPLKPRIKII
FT                 GFSKDLNHEVLVDKLKQQNNLTTSFDLKVVRVTRNQKRKSNQMSAVIETDA
FT                 TGFVTLMKLRRVYLGWERCRLVDATDALRCYNCSEFQHKASACTKAACCPK
FT                 CAGGHKAEDCDSDYEKCINCHMENAKRTSKHDDLLDVSHAAWSLDCPINQK
FT                 HLARARRRIDFSS"
FT   CDS           935..4387
FT                 /product="CR1-55_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSTTSAEKNLQSVISAGPGKLLTSICPAEVKQDTAPP
FT                 LSGTEPXQQSLDIPHLTEYDRDHSTDNQISDAVSTMDFYLQLDDSAGPGKL
FT                 LTSICPAEAKIDTAPFLSGIQPFQLCSNVNHSNERCSTEDKQFACATSTKD
FT                 FNYQLEDSAGPGKFTTSICPAEAETDTAPPLSVTQLLQTPTTDLQHTAHVC
FT                 PASMPKGIRIYYQNVRGLRTKIDNFFVAVSDNEYDVIVLTETWLXDVINSV
FT                 QLFGQGYTVHRKDRCPDISGKSRGGGVLIAVKNTLRSSRCKIHSDPNLELL
FT                 WINVESNDQVICLGVAYIPPEQSRDRCMIESYVSSISTVVSAGDFHTAYFL
FT                 FGDFNLPDLCWLSTPAGYAYPEPSDSATPSNAFIDGMSLLNLKQLNVVRNN
FT                 LDRTLDLLFVNDEALPMCDLTQPFEPLIPIDLLHPPLLATVRCSARSVFIE
FT                 ATDDRLLDFSKANFEQLNEALLAIDWSRLYNERDVNVAVQLYTDTLTQMFH
FT                 EFVPAPRPRQKPPWTNNHLRHLKRKRARALREYSNNRNSITKRRFTIASSE
FT                 YKCYNRALYGRYVVRKQGVLKNNPKAFWAFVNEKRKETGLPSSMFLGSENA
FT                 DTNEEMCNLFAEHFSSVFDCATINQDQVSCAVRDVPLNAMCMTIYEFDDED
FT                 ILKAIKKLKPSTNPGPDGIPSVVLKKCSAAICAPLRSIFNKSISQGVFPER
FT                 WKKSVMFPAFKKGDKRDISNYRGVTSLSAGSKLFEILVSNELFRHAKSYIS
FT                 QDQHGFYPGRSTATNLVQFTSLCLKAMERGIQVDTIYTDLKAAFDRVNHHI
FT                 LLAKLNRLGIATNVIKWMESYLTNRQLVVKLGSMESEPFSNYSGVPQGSNL
FT                 GPLLFSLFFNDACFVVPQGCRLVYADDFKIFRSVRSSEDCRMLQVLVERFS
FT                 SWCERNFLPISVKKCSVISFTRKKSPILWDYHMGNERVERTNVVKDLGVML
FT                 DSELNFREHYSYIINKANRNLGFIFKISSEFRDPYCLRSLYFSLVRSILET
FT                 AAVVWSPAHNVWIDRIERIQSKFIRYALRHLPWQNVIELPPYEARCRLLGM
FT                 DTLERRRNNLKAIFVGKILLGEIDAPWILAQININVLPRPLRQRSFLRLQP
FT                 HRTDYARNEPVNSMCVLFNLYHHMFDFNVSSRVFQNRVTNFYE"
XX
SQ   Sequence 4462 BP; 1283 A; 1006 C; 980 G; 1187 T; 6 other;
     gtctatttct gtcccaatgg ctccagctca tgaacttggt ggtttgcttc gttctggtag        60
     gcgccgaaat aatccagtaa attcaaatac tgctattccc agtacacccg tgatgtcacc       120
     aataccgcca gaccctgcta ctcctcgcac gcagcaagca aaatcgaacg ccgtcgctaa       180
     acttgaacaa actgtcctgt ttaagccaaa gaagaaccag tcagctgaaa aaacaaagga       240
     cgacatatca gcgaaattcg atcctgtggc tttcgctgtg aaagatgttt ggctcagaga       300
     ttttggggaa gtagccgtaa gatgcggttc aaaagatcta gcattgaaga tggtcagctc       360
     tgcttctact gtttgcgctg aaaaatacat tattgaaatg caaaaaccgt tgaaaccaag       420
     gattaaaata attggtttct caaaagacct gaatcatgaa gtactggtag acaaactgaa       480
     acagcaaaac aatttgacga cttcgttcga tctgaaagtt gtgcgtgtaa cgagaaacca       540
     aaagcggaaa tctaatcaga tgtcggctgt tatcgagact gatgcaactg gttttgttac       600
     tttgatgaag ctccggcgcg tctatctggg atgggaaaga tgcagactgg tggatgctac       660
     tgatgctctt cgctgttaca attgttcgga gttccaacat aaggcctcag cttgcacgaa       720
     agctgcatgt tgtcccaaat gtgctggtgg acataaggca gaagattgtg attcggacta       780
     cgaaaagtgt atcaattgcc atatggaaaa tgctaaacgt acatcgaagc acgacgatct       840
     cctcgacgtc tcacacgctg cttggagttt ggattgtcca atcaatcaga aacatctagc       900
     cagagcaaga cgaaggattg atttttcaag ctagcaatca acgacctcag cagaaaaaaa       960
     tctgcagtct gttatctctg ctggtccagg taaattgttg accagtatat gtccagccga      1020
     agtgaaacaa gatactgcac ctcctctcag tggaactgaa ccattmcagc aatctttgga      1080
     catccctcat ctcaccgagt acgacagaga tcactccaca gacaatcaga tctccgatgc      1140
     ggtgtcaacg atggattttt atctccagct tgatgactca gctggtccag gtaaattatt      1200
     gaccagtata tgtccagccg aagcgaaaat agatactgcg ccctttctca gtggaattca      1260
     accattccag ctctgttcga acgtgaatca ctccaacgaa agatgttcta cggaagacaa      1320
     gcagtttgct tgtgcgactt caacgaagga ttttaactac cagcttgaag actcagctgg      1380
     tccaggtaaa tttacgacca gtatatgtcc agccgaagcg gaaacagata ctgcgccacc      1440
     tctcagcgtw actcaattgt tgcagactcc tacgaccgat ttgcaacaca ctgcccacgt      1500
     atgtcctgca tcgatgccta aagggatccg aatatactat cagaacgtwa gagggcttag      1560
     gacgaaaatt gacaactttt ttgttgcggt ttcggataac gaatatgacg tcattgtctt      1620
     gacagaaact tggctgwatg atgtcataaa ctccgtacaa ctattcggtc aaggttacac      1680
     agtgcatcgc aaagatcgtt gtccagatat ttccggaaaa tctcgtggtg gcggagtgct      1740
     catagctgtg aaaaacacat taagatcgtc tcggtgtaag attcacagcg acccaaatct      1800
     tgagctctta tggatcaatg tcgagagcaa tgatcaggtc atttgcctcg gcgtagcgta      1860
     cattcctcca gaacaatcca gagatcgatg tatgattgaa agctatgtca gttccatttc      1920
     gacggttgta tcagcaggtg atttccatac tgcttatttt ctcttcggtg attttaattt      1980
     gcccgaccta tgttggcttt ccactcctgc gggctatgcg tatcctgaac cgtctgactc      2040
     tgctactccc agcaatgcat tcatcgatgg tatgtccctg ctgaatctga aacaactgaa      2100
     cgtagttaga aataatctgg accgaacact tgatctacta ttcgtgaatg atgaagctct      2160
     accgatgtgt gatcttactc aaccatttga accattgatt ccaattgatt tgttgcaccc      2220
     accacttctc gccactgtgc gctgttcagc tcgcagtgtg ttcatcgaag ccaccgacga      2280
     caggttattg gacttctcga aagcgaattt tgaacagttg aatgaagctc tccttgcaat      2340
     tgactggtca cgtttgtaca atgaaaggga tgttaatgtg gcggttcagc tttacactga      2400
     tactcttacg caaatgttcc atgagtttgt acctgcacca cgccctcgtc agaagcctcc      2460
     ttggactaac aaccatctcc gacacctgaa acgaaaacgc gcacgcgccc taagagaata      2520
     ctctaacaac cggaactcaa ttacgaaaag gagatttacc atcgccagtt ccgaatacaa      2580
     atgttataac cgagcactct acggtcgwta tgtggttcgg aaacagggag tcttgaaaaa      2640
     caacccgaaa gctttttggg cktttgtcaa cgagaagcgc aaagagaccg gtttgccatc      2700
     aagcatgttc ttgggaagcg aaaatgcaga cacgaatgag gaaatgtgca acttattcgc      2760
     cgagcatttt tccagtgtat tcgattgcgc aacaatcaac caggatcaag ttagttgtgc      2820
     tgtaagagac gtgccgttga atgcaatgtg tatgacgatc tacgagtttg atgatgaaga      2880
     tattctgaag gctatcaaga agctgaaacc gtcgaccaac cctggaccgg atggaattcc      2940
     ttcggtcgtt ctgaaaaaat gctctgctgc tatttgtgca ccactacggt cgattttcaa      3000
     caaatcgatc tcgcaaggag tatttccgga acgctggaag aaatccgtta tgttccctgc      3060
     tttcaaaaaa ggggacaaac gtgatatttc aaactaccgc ggcgtaacct cgctcagtgc      3120
     tggttctaag ctgtttgaga tcctggtgag caacgaactg tttcgacatg cgaaatcata      3180
     catttcgcaa gaccaacacg gcttctaccc aggcaggtcc actgctacta acttagtaca      3240
     attcacttca ttgtgtctaa aagctatgga acgaggaatt caggttgaca cgatctacac      3300
     cgacttaaaa gcagcatttg atagagtgaa tcaccacatc ctgctggcga agttaaatcg      3360
     tctaggcatc gcaaccaacg tcatcaaatg gatggaatcg tacttgacaa atcgtcagtt      3420
     agtagtcaaa ttaggttcaa tggaatcaga accgttcagc aactactctg gtgtgccgca      3480
     gggtagtaac ctagggccat tactgttctc cttgtttttc aacgatgcct gctttgtcgt      3540
     ccctcaaggc tgcagattag tatatgctga cgattttaaa atatttcggt cagtcaggtc      3600
     ttcagaggac tgccgaatgc tgcaagtgtt agtcgagagg ttttcaagct ggtgcgaaag      3660
     gaactttttg cctatcagcg tgaagaaatg ctcggtaatc tcgttcacca ggaagaaaag      3720
     tccaattctc tgggattacc acatggggaa tgagcgagtg gaaaggacga acgttgtgaa      3780
     ggaccttgga gtcatgctgg actctgagtt aaactttcgt gagcactaca gctacatcat      3840
     caacaaagcc aaccggaatc ttggattcat atttaagatt tcgtctgagt ttcgagaccc      3900
     atactgctta cggtcacttt atttcagtct agtccgttcc atactggaaa ccgcagcagt      3960
     agtatggagc ccagcccaca atgtttggat cgacagaatt gaaagaatac agtcaaaatt      4020
     catccgatac gcgctgagac atctgccctg gcagaatgta attgaacttc caccatacga      4080
     agctcgatgc cggcttctag gaatggacac ccttgagagg aggagaaaca acttgaaagc      4140
     catatttgta ggtaaaatac ttttgggaga gatcgatgca ccgtggattc ttgcccagat      4200
     caatatcaat gtcctgcccc gcccactgag acagcgtagt ttccttcgtc ttcaaccaca      4260
     ccgaactgac tacgcacgaa acgagccagt taactccatg tgtgtgttgt ttaatttgta      4320
     ccatcatatg ttcgacttta atgttagttc tagagtattt caaaatcgag tgacaaattt      4380
     ttatgaatag gtttaagtgt tcatggtaga ctaatgtgtc agatgaatgt aactctaata      4440
     ataataataa taataataat aa                                               4462
//
ID   CR1-56_AAe  repbase;    DNA;    INV; 5007 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-56_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5007
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1143-1143 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..1218
FT                 /product="CR1-56_AAe_1p"
FT                 /translation="MNSNCKQCSEPIKTIEFIQCSGFCHQSAHLKCIGLKR
FT                 ANMDLVREHKNILWFCDRCIDNLEYLKQNPLKTKQDVVEAVSDVFRESLNV
FT                 LKDEILETKELAKSLTDKKLSNDFSGQVRARTSWPSIKRSRDTATPKARPD
FT                 SRLVGGTKSIEKGSLTVETVAKPPEKFWLYLSRIARHVTEDDVTELVRNCL
FT                 QTQQPIEVRKLVRKDADLNQFAFISFKIGIEKELKETALDPSVWPKGIFFR
FT                 EFENQQTERDFWGPPKIPRLDIRTPSATLSTPVTQITAMQ"
FT   CDS           1107..4874
FT                 /product="CR1-56_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KPANRTGFLGTSKNSSIGHPDTFRYFVHSSHSDNCNA
FT                 IIYPPPSTSEAAYLGTTLVQYGSNFQAYGTDHQSRRIVESHLEASDPLNSV
FT                 LPFADIDHHSRLDPAVEVCDEVFQIACEGKYYLESNDIHILRDKSYLDSSS
FT                 TLPCCNHGVSSGPANHSSPERKPSTSTMEAPKPPSTVVPILPAHNSRSGPV
FT                 FGLDAGVFQTTNEGKYIKSPTTSLPESIPIFXAAPAISGPTRPISDDNRLE
FT                 NAAMCIDRADSSFPEADAPVPENRTMDIVVPPTPADTRPSESVIAPFANIT
FT                 TSTCSADGMVNIYYQNIGGLNSSLEDYLMASSDCCYEILVLTETWLSANTI
FT                 SSQVLDQQYEVFRCDRGPHNSSKARGGGVLLAVRRGIKAHLIEDDAWNGVE
FT                 QLWLAIELADRNLYTCVIYVPPDRTRDDSLLDAHMSSVQSIVDMASPKDDI
FT                 LIIGDFNLPGICWKSSSNGFLYPDVGHSTLNVASNRFLDGYSSATLRQINH
FT                 IVNENGRSLDLCFVSSRDVAPSIALAPAPLVKFVPHHPPLLVSINSKIIED
FT                 CKEIPSSVFYNFKNADYDSIIRVLQTIDWANILDEHDVNSAALTFSHILSY
FT                 VIDRHVPKKTVSVSNAAWQTSELRDLKRQKKAALRRYSKHKSQEQRDHYVR
FT                 LNSLYKSASRDCFRRYQTGIQRRLKNNPKYFWNYVKKQRNEYGLPSSMKWN
FT                 DTVTSDPQAICDMFASKFSSTFSNEALSDQQITSASANTQLTGLVMPDVTV
FT                 SNESIVEASSKLKASTCLGPDGIPSLFLKNCIDCLLVPLRTIFNKSLSSGV
FT                 FPACWKNAYMFPVHKKGDRKNIENYRGISSLCAVSKLFELVIVDRLFFHCK
FT                 QFISPNQHGFFSGRSTASNLLCLTTYVAESMRLRSQTDVLYLDLTAAFDKI
FT                 NHEIAVAKLERFGVHGALLSWFKSYLNGRRSQVVIGESKSAYFPIPSGIPQ
FT                 GSHLGPLIFLLYFNDVNTVLDGPKLSFADDFKLYFKINSDADAWFLQQQLD
FT                 AFAQWCHSNRMTVNPEKCSIITFSRLKNPKLYNYTFSGVILERVDRIKDLG
FT                 VILDCQLTFRHHLSYMLHKASASLGFIFRVTKTFTDIHCLKALYCALVRSI
FT                 LEYCSTIWSPYYQNGAERIESVQRRFVRFALRRLPWRDPFHLPSYESRCRL
FT                 IGLDTLRTRRDVAKALLVADVLQGRVDCSEILQQVNLYVRPRALRITSMLR
FT                 PQTQRTNYGVNCAITGLQRTFNRVDAEFDFNVSRDVLRGRFFTVFR"
XX
SQ   Sequence 5007 BP; 1372 A; 1148 C; 1047 G; 1438 T; 2 other;
     cacttctggc aaccactgac gtgtacgcaa ctttgttgat atttcgtcgt cgttttattt        60
     tcgctattta tgtgtttatt tgattcgtta attcatgtcg ttattattgt tgtgaactgc       120
     tttctcgttg ctatttgatt tcaagaccgg ctttcttcgt tcgacgtgtc gtagtgagaa       180
     aaaacatatc taattttcgg tccattagga gtgtttttgt tgtgcgctgc cgttacgatc       240
     tggacgtacc tctctggctg tattcgtatt ctcttccgaa gcgacatctg gtggaaacca       300
     acttcaatct gcaccaatac taattcacgg caaagctctt cttgtgcaac tttccatctg       360
     ttggccggta tcgaaatgaa ttcaaattgt aagcagtgct ctgagccgat caaaaccatt       420
     gagttcatac agtgcagtgg tttttgtcat caatcagcgc acttgaaatg tatcggcctg       480
     aaaagagcta atatggacct cgtacgagag cataagaata tcttatggtt ctgcgaccgt       540
     tgcatcgata atcttgaata tttgaagcaa aatccactga aaacgaagca ggatgtcgta       600
     gaagcagttt cagatgtatt tcgcgaatct ctgaatgtat tgaaagacga gattctggaa       660
     accaaagagc tcgcaaaatc tctgaccgat aagaagcttt ctaacgattt ttctggtcag       720
     gttcgagctc gtacttcatg gccgagtatt aaacgatccc gcgacacagc tactcctaaa       780
     gctcgccctg attccagact tgttggtggc accaaatcca ttgaaaaggg gagcttgact       840
     gtggagaccg ttgccaaacc accagaaaaa ttctggttat atttatccag aatcgctcgt       900
     cacgtcacgg aggatgacgt taccgaacta gtcagaaatt gtctacaaac tcaacaacct       960
     atcgaagtgc gaaagcttgt tcgcaaggac gcagatttga accagttcgc attcatctca      1020
     tttaaaattg ggattgagaa ggagctgaag gaaactgccc tcgacccttc tgtctggccc      1080
     aaagggatct tcttcaggga gtttgaaaac cagcaaacag aacgggattt ttggggacct      1140
     ccaaaaattc ctcgattgga catccggaca ccttccgcta ctttgtccac tccagtcact      1200
     cagataactg caatgcaata atctacccac caccatcaac atcagaagca gcttatctcg      1260
     gaactacctt ggttcagtac ggcagcaatt tccaagcgta tggaacggat catcaatcga      1320
     gacgcatcgt agaaagccat ttggaagcct ctgatcccct caactcagtc ctgccatttg      1380
     ctgacatcga tcatcacagt cgtctcgatc ctgcagttga ggtgtgtgac gaggtcttcc      1440
     agatagcttg cgaaggcaag tattatttgg aatcgaatga catacatatt ctgcgtgaca      1500
     aatcatacct tgacagctca tctactctac cctgttgtaa tcacggagtt tcttcgggac      1560
     cagctaatca ttcatcaccg gaacgcaagc cttcaacaag taccatggaa gccccaaagc      1620
     cacccagcac agtcgtgcca atcctgccag cgcacaacag tcgttccgga cctgtgtttg      1680
     ggttggacgc aggggtcttc caaaccacca atgaaggcaa gtatattaaa tctccgacca      1740
     cgtcactgcc tgaaagcatt ccaattttca gkgctgctcc agctatatcc ggtccaacac      1800
     gaccgatttc ggatgacaat cgtttggaga atgcagctat gtgtatcgat agagcagatt      1860
     cctcgttccc tgaagcagat gcacctgttc ctgagaaccg caccatggat attgtcgtgc      1920
     ctcccacgcc tgccgatact cgtccgtcag aatcagttat agcccctttt gctaatatca      1980
     caacctcgac atgttcagcc gatggtatgg taaacattta ctatcagaat attggcggtt      2040
     taaattcgtc tctggaggat tatttgatgg ccagttcaga ctgctgttat gaaattcttg      2100
     tattaactga aacttggctc tctgcaaata cgatttcaag tcaagtactg gaccagcagt      2160
     acgaagtatt ccgttgtgat cgtggtccac ataacagcag caaagcgcgc ggtggcggtg      2220
     tgctcttagc tgtacgacgg ggtatcaaag ctcatttaat cgaagatgac gcgtggaatg      2280
     gcgtggagca gctgtggtta gcgatcgaac tagctgaccg aaacctctat acgtgtgtca      2340
     tctatgttcc ccctgataga acacgtgatg attcattgct cgacgcacac atgagttcag      2400
     tacaatctat tgtagacatg gcttcgccca aggacgatat cttgattatt ggtgatttta      2460
     acttgcctgg aatatgctgg aaatcttcma gtaatggatt cctgtacccg gacgttggtc      2520
     attcgactct taatgttgct tcgaatagat ttcttgacgg ttacagttct gctacgctac      2580
     ggcagattaa ccatatcgtg aacgaaaacg gcagaagtct cgatttgtgc tttgttagct      2640
     ctcgcgatgt ggctccatca atagctttag ccccagcacc gctggtgaaa tttgttccac      2700
     accaccctcc gctgcttgtt agtataaata gtaaaattat cgaagattgc aaagagatcc      2760
     cttcttcagt cttttacaac ttcaaaaatg cagattatga cagcatcatt cgcgttcttc      2820
     agacgattga ttgggcaaac atccttgatg agcatgatgt caatagtgcg gcacttacat      2880
     tctcccatat tctttcatat gtgattgatc gacatgtacc caagaaaact gtatcagtgt      2940
     ccaatgcagc atggcagaca tctgagctac gagatctaaa aagacagaag aaagctgctt      3000
     tgagacggta ttctaaacat aaaagtcagg agcaaagaga ccattacgtc agactcaata      3060
     gtctatataa aagtgcaagt agagactgtt ttcgtcggta tcagaccggc atacaacgac      3120
     gacttaaaaa taatccaaaa tatttttgga attatgttaa aaaacagcga aacgagtacg      3180
     gattgccttc ttcgatgaaa tggaacgata cagtaacctc tgatccacaa gccatctgcg      3240
     atatgttcgc ttctaaattc tccagcactt tctctaacga agctctatcg gaccagcaaa      3300
     taacatcagc atcagctaat actcagttga ccggtttagt aatgcccgat gtgactgtca      3360
     gtaacgaatc cattgtagaa gcatcaagta agcttaaagc ttcaacgtgt ctaggacctg      3420
     atggaattcc ctccctgttt ttgaagaact gcattgactg cttactcgtt cccctgcgaa      3480
     caattttcaa caaatctcta tcatctggag tgtttcctgc gtgctggaaa aatgcgtata      3540
     tgtttccagt tcacaaaaag ggagacagga agaatattga aaattatcgt ggaatatcat      3600
     cactgtgtgc tgtttccaaa ctcttcgagc tggtcatagt agaccgacta ttctttcact      3660
     gcaagcaatt catcagccct aatcagcatg gattcttttc cggacgatca accgcctcta      3720
     atctattatg tctcaccaca tacgtggctg aaagcatgcg cctaagatca caaacagatg      3780
     ttctatattt ggacctaact gcagcattcg acaaaatcaa tcatgaaatc gcggtagcga      3840
     agctcgaaag gtttggtgtt cacggtgcac ttttaagctg gtttaagtct tatcttaatg      3900
     ggcgtcgttc acaagtcgtc attggtgagt ctaaatcagc atattttccg attccatccg      3960
     gtattccaca aggcagtcat cttggaccgt tgatattcct gttgtatttc aatgacgtca      4020
     acaccgttct tgatggacca aaactctctt tcgctgatga cttcaagctg tattttaaaa      4080
     tcaattctga cgccgatgcc tggtttttgc aacagcagtt agacgctttc gctcaatggt      4140
     gtcacagtaa tcgtatgacc gtaaacccag agaaatgctc gattatcacc ttttcccgtt      4200
     tgaaaaaccc gaaattgtac aactacacct tctctggcgt cattctggaa agagttgatc      4260
     gaatcaagga tcttggagtg atacttgact gtcagctgac ttttagacat cacttgtcgt      4320
     acatgttgca caaagcttca gcatcccttg gatttatttt tcgagtgacc aagacgttca      4380
     ctgacattca ctgtttgaag gcgctctact gtgcgttggt tcgttcaatt ttggagtatt      4440
     gctcaactat atggagtcca tactatcaaa atggagctga aaggatagag tctgtccaaa      4500
     gacgtttcgt tcgattcgct cttcgccggt tgccgtggcg cgacccattt cacctcccga      4560
     gctatgaaag ccgatgtcgc ctaattggct tagacactct cagaacacgc agagatgttg      4620
     ccaaggccct tctggttgct gacgttttgc agggccgagt cgattgctcg gaaatcctac      4680
     agcaggttaa tttatacgta cgaccaagag ctttgcgtat cacctcaatg cttcggccgc      4740
     aaacccaacg caccaattac ggagttaact gcgccataac cggtctacaa aggacgttca      4800
     acagagtaga tgcagaattc gattttaacg tgtcacgtga cgtgcttcgt ggtagatttt      4860
     ttactgtttt cagatagttt ttaagtgttg tgacttttaa atattttttg tttgtagtct      4920
     gtgtattata accaattatt aataaccatc attggggctc aatagcctgt tgatgaagaa      4980
     gaaataaata aataaaataa ataaata                                          5007
//
ID   CR1-57_AAe  repbase;    DNA;    INV; 5594 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-57_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5594
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1144-1144 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 19 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           289..1680
FT                 /product="CR1-57_AAe_1p"
FT                 /translation="MTSVTCSACTQIITTESDRVYCFGGCEQILHIRCSEL
FT                 RQSDSNALRNNVALKYMCFACRKKQVCLNDLQAKCTELLERINEIGATVTK
FT                 HETSFSQLENRLLTRIESVLMPALVSKIESMISTRKVNDNRLSYATVTRDA
FT                 TTTAVCASAVTVSPVPNGSDGRESLDEGWILRSGKRRGVTKSVTSTKTSAE
FT                 NKNSDNSQNRRKRSSNVQSTAVKKIEQTVIIKPKSVQQADVTLKQVRDKID
FT                 PVNFSVKGIRTRENGDVVVRCETSEHAQKLVDAAVDVLSDCYEISVQKPLK
FT                 PRIKIIGLSEDLDASEFVSVLKKQNELPTSAEITLIRMRKIEKWKQFPFIA
FT                 IIETDCQTFETLIQRERVHVRWDRCRVAEDVNVLRCFKCSKYGHKASSCNN
FT                 PLCCPICTGDHEATDCDAAFEKCINCELRNKLSKSPYDEQLDVNHSAWSSA
FT                 CPVYQKRLKNVRLMVDYSA"
FT   CDS           1684..5193
FT                 /product="CR1-57_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSVADRGITVSMGKLNTGICPAGALIDTAPIQMDISP
FT                 QPIATTDTCLTDFGKSRTMCYQSSNFHDSLVGNPDCSGNLNTGICPAEAPL
FT                 DAAPIQLDISYQMAIGTDATYNSRTICGSSCHQDCLVDNPACSGKFNERIC
FT                 RAEVRTDAARFNSHLVLQSPVTSIHRNGWNDADGPGVPGNGGSICPAEAEN
FT                 DTAPPESNSRCCFSVDEEDARNKLTFFYQNVRGLRTKIDDFFLAVSTCCYD
FT                 VIVLTETWLDDQIMSPQLFGNSYTVFRNDRNRRNSRKSRGGGVLIAISTRI
FT                 SCSLDPSPMHDSLEQIWVKLNMPGLSISVGVLYLPPDRKADLTSINNHIDS
FT                 VESVFSNLRPNDLAYLFGDYNQSNLRWNTTPRTSPTIDVMRSSMSTACSSL
FT                 LDGFSLHGLIQINHVLNQNERLLDLVLVNEAAFGNCALSEAIEPLCALDND
FT                 HPALELDCYLPRPLKFDNVSYESGFDFRKADFHGLSEALLRCDWRFLNAAG
FT                 NIDAAVDSYTRMMQTILPDHVPLRRPPAIPPWSNFRLKNLKRKRSKALRKY
FT                 CRTRCIVAKQALTRASNKYRLYNRLLYKRYAIRTQNNLRRNPKQFWNFVKS
FT                 KRNETGLPSEIFLGSSHASSTPEKCNLFARHFQGAFNETKADDSQIDIACR
FT                 NTPINVCELSISNITSQQVTAAISKMKYSTASSPDGIPSCVLKRCCNALSP
FT                 VLASLFNMSLQQCRFPSSWKLSIMFPVYKKGDKRDVENYRGITSLCASSKV
FT                 FEIVVYDMLFAASKDYICTSQHGFYPKRSVSTNLVIFASHCIRNMDDGLQT
FT                 DVVYTDFKSAFDRVDHNILLKRLELLGVSFNTICWLKSYLTNRKLRVMIGS
FT                 EKSVAFNNLSGVPQGSNLGPLLFSLFINDLSRLLPTGCKLFFADDVKIYLT
FT                 IKSFDDCIRLQELLNIFVEWSSINKLTLSLHKCSVISFHRKLKPMIYNYTI
FT                 GNRNLERIDHVRDLGVILDTALTFRIHFEDIISRANRQLGFIFKICDEFKD
FT                 PLCLRSLYCALVRSLLESNVVAWCPYQLTWINRIEAVQKKFIRRALRFLPW
FT                 RDPVNLPPYEHRCRLLGLDTLVSRRSAQQAGFAAKVILGEIDAPEILSQLN
FT                 FYAPERILRQRNFFMAGGSNTVYGQHNPINAVQTVFNEAYELFDFNMTAAT
FT                 FQRRVLQRGTH"
XX
SQ   Sequence 5594 BP; 1637 A; 1179 C; 1146 G; 1632 T; 0 other;
     aatgtgtgca aagcaagtgt gtattgtgta ttgtgcttac gtttaatttc tgtttatcct        60
     tgcaaaaact gcaatacatg tgatctaaat tgcatcagat tgcagaactt tttatgctct       120
     tgccacgcat agtggatgat tattgtgcag tgcaagtgtg ttaacaaaat ttaaagataa       180
     ataactatca aaaattacat cggtgcagca acaacaacag aatcgacaga atcacaaagc       240
     gttcttctgt tccattgaag aggggcatgc gtgccctgcg tcgctcccat gacgtcggtt       300
     acgtgtagcg catgtactca gataatcacc accgaaagcg atagagtcta ttgttttggc       360
     gggtgcgaac aaattctgca tattcggtgc tctgagcttc gtcaatctga ttccaatgct       420
     ttgcgaaaca atgtcgctct caaatatatg tgctttgcgt gccgtaagaa acaggtatgt       480
     ttaaacgatc tgcaagctaa atgtaccgag ttattggaaa gaataaatga aattggtgcg       540
     actgtcacta aacatgaaac tagcttcagc cagctggaaa acaggcttct gaccaggatt       600
     gagtctgttc taatgccggc gcttgttagc aagatcgaaa gcatgatttc tactcggaaa       660
     gtaaacgaca atcggctctc ttatgcaact gtcacacgtg atgcaacaac tactgcagtc       720
     tgcgcttctg ccgtcacagt gagtccggta cctaatggtt ctgatggtcg tgagagcttg       780
     gacgaaggat ggatactacg atcgggcaaa cgtcgtggtg tcactaaatc ggttacaagt       840
     acgaaaactt ctgcagagaa caaaaattcc gataacagtc agaataggag aaaacgatca       900
     agtaacgtac aatctactgc tgtgaaaaaa attgagcaga ctgtcatcat caaaccaaag       960
     tcagttcaac aggctgatgt tactctgaaa caggtccgag acaaaattga tccagttaat      1020
     ttctctgtaa aaggcatacg aaccagagaa aacggtgatg ttgttgtacg atgtgaaaca      1080
     agcgagcatg ctcaaaagct agttgatgct gcggttgacg ttctttccga ttgctatgaa      1140
     atttctgtac aaaagcctct taagcccaga ataaaaatca ttggtttgtc cgaggatctt      1200
     gatgcttctg aatttgtatc ggttttgaag aaacaaaacg aactacctac ctcggcggaa      1260
     ataacactga tccgaatgcg aaaaatagag aagtggaaac aatttccatt cattgctatt      1320
     attgagaccg attgtcaaac cttcgaaaca ctcatacaac gtgaacgtgt ccatgttcgt      1380
     tgggatcgtt gccgggttgc tgaagatgta aatgttctcc gctgctttaa gtgctccaaa      1440
     tatggacaca aagcttcctc atgtaacaac ccgttatgct gtccaatatg cactggtgat      1500
     catgaagcta ccgattgtga tgctgccttt gaaaaatgta ttaattgcga actgcgaaat      1560
     aagctgagta agtctccgta tgatgaacaa ctggatgtca atcactcagc ctggagttca      1620
     gcgtgtccag tctatcagaa gcgtctgaag aatgttaggc tcatggtgga ttattcagcc      1680
     tagcaatcag ttgctgatag gggtattact gtttctatgg gtaaattaaa caccggtata      1740
     tgtcctgccg gagcacttat agatactgca ccaattcaaa tggatatttc accacagccg      1800
     attgccacaa ccgacacttg tttgactgac ttcggaaaat ctaggacgat gtgttatcaa      1860
     tcatctaatt ttcacgattc tcttgtgggc aatcctgact gttcaggtaa tttaaacact      1920
     ggtatatgtc ctgccgaggc accccttgat gctgcaccaa ttcaattgga tatttcatac      1980
     cagatggcta ttggaactga cgccacctac aactccagga caatatgtgg ttcttcatgt      2040
     caccaagatt gtctagtaga caatcctgct tgctcaggta aatttaatga acgtatatgt      2100
     cgtgccgaag tcaggacgga tgctgctcgt tttaatagcc atttggtttt acagtctccc      2160
     gtcacttcta ttcaccgcaa tggatggaac gatgctgatg gtccaggtgt cccaggtaat      2220
     ggtggcagta tatgtcctgc cgaagcggag aatgatactg caccacctga atcaaattct      2280
     cgctgttgtt tcagtgtgga cgaagaagat gcacggaata agttaacctt tttctaccaa      2340
     aatgtacgtg gactacgcac aaagatagat gatttctttc ttgctgtatc aacttgctgc      2400
     tatgatgtta ttgttcttac ggagacatgg ctcgacgatc aaatcatgtc acctcaactc      2460
     ttcggaaact cctacaccgt cttcagaaac gatcgaaatc gacgcaatag cagaaaatca      2520
     cgcggtggag gtgttcttat cgcaatttca acaagaataa gctgcagctt agatccttct      2580
     cccatgcatg actcattgga acaaatctgg gtaaagctga atatgcccgg actcagtatt      2640
     agcgttggtg tcttatacct ccctcccgat agaaaggcag atttaacaag cataaacaac      2700
     catatcgatt ccgtggaatc tgttttttcc aacttacgac caaacgatct tgcttatctc      2760
     ttcggtgact acaaccaatc aaatttacgc tggaacacaa cgcctaggac aagtccaacc      2820
     atagatgtta tgcggtcttc tatgtctaca gcgtgcagta gcctccttga tggtttctct      2880
     cttcacggtc tgattcaaat caaccacgta ctcaatcaga atgaacgtct tttggatttg      2940
     gttcttgtta acgaagcagc ctttggaaac tgtgcacttt ccgaggccat tgagccactc      3000
     tgcgctcttg ataatgatca tcctgcttta gagttggatt gttatctgcc tagacctcta      3060
     aagtttgaca atgtttcgta tgaatctggt tttgactttc gcaaagctga ttttcacggc      3120
     ttaagcgaag cactacttcg atgcgattgg cgatttttaa atgctgcggg taatatagat      3180
     gctgctgttg acagctatac aagaatgatg caaactatct tgcccgatca tgttccgtta      3240
     cgcaggccac ccgcaatacc tccgtggagt aactttcgtc ttaaaaactt gaaacggaag      3300
     agatccaaag cgcttcggaa atactgtaga actcgttgta ttgttgccaa gcaggcctta      3360
     accagagcaa gtaataaata tcgactgtat aatcggcttc tttacaaacg ttatgctata      3420
     cgaacgcaaa ataatttacg cagaaatcct aaacaatttt ggaattttgt aaaatcgaag      3480
     cgcaatgaga ctggtctgcc atcagaaatt ttcttgggct cgtcgcatgc ctcctctact      3540
     ccggaaaaat gcaatctttt tgctaggcac ttccaaggcg catttaatga aactaaagcc      3600
     gacgattcgc agattgacat tgcctgtaga aacactccta tcaatgtatg tgagctttcg      3660
     attagtaata tcacaagtca acaggtcact gctgcgataa gcaaaatgaa gtactccact      3720
     gcttcaagtc ctgatggaat cccgtcctgt gtattgaaaa gatgctgcaa tgccttaagc      3780
     ccagtgttag cttctctgtt caatatgtcg ctacagcaat gtcgttttcc gtccagttgg      3840
     aaactctcta tcatgttccc cgtatacaag aaaggtgaca agagagacgt tgagaattac      3900
     cgtggaatta catccctatg tgccagctca aaagtcttcg aaatcgtcgt ttatgatatg      3960
     ttattcgctg ccagtaaaga ttatatttgt accagtcaac atggattcta cccaaagaga      4020
     tctgtttcta caaacctggt gattttcgct tcacattgta tacggaacat ggacgatggg      4080
     ctacaaacag atgtggtata tactgatttc aaatctgcat tcgatcgtgt agatcacaac      4140
     atcttgttga agcgactcga gctgcttggc gtatctttca atactatttg ctggcttaaa      4200
     tcgtacttaa caaatcggaa actacgtgta atgattggct ctgaaaaatc agttgcattc      4260
     aacaatttat ctggcgtacc acaaggaagc aatctcggac ccttactatt ctcgctcttc      4320
     atcaacgatt tgtctcgtct actacctaca ggatgcaaat tattttttgc cgatgacgtt      4380
     aaaatatact taacaatcaa aagtttcgac gattgcatta gattacaaga attgttaaat      4440
     atctttgttg agtggagctc aatcaacaag cttaccttga gtttacacaa gtgcagtgtt      4500
     atatcatttc atcgcaaact taagcccatg atctacaatt ataccatcgg caatcgtaac      4560
     ttggagcgta ttgaccacgt acgggacttg ggcgttattt tggatactgc tctcactttt      4620
     cgcatccatt ttgaagacat tatttccaga gctaatcgac agttaggatt tatttttaaa      4680
     atctgtgacg aattcaaaga tcctctgtgt ctccgttcac tatactgcgc acttgtacga      4740
     tcactgttgg aatccaatgt tgttgcctgg tgcccatatc agttgacttg gataaacaga      4800
     attgaagctg tccaaaagaa atttataaga cgtgcacttc gctttctgcc ctggcgtgat      4860
     ccggtgaact tgcctccgta cgagcatcga tgccgtctcc ttggacttga tacactggtc      4920
     agcagaagat ccgcacagca ggctggattt gcagcgaagg tgatacttgg agaaatagac      4980
     gcaccagaaa tcctgtctca gttaaatttt tatgcaccgg aacgaatcct gcgacagcga      5040
     aactttttca tggctggagg cagtaatacg gtttacgggc aacacaaccc gatcaatgcc      5100
     gtacagacgg tattcaatga agcatatgaa ttgttcgact tcaacatgac tgcagctaca      5160
     ttccagagaa gagtactgca aaggggtacc cattgagcat gaatgcagca ttagattcaa      5220
     caaacagact ttcaggcgag aatatgtcca ataacttaac gttagaaaaa tttagctaca      5280
     tgtctctttt tgtttttttt ttcagatgct gacggagaat acctctgtat atttgcaata      5340
     cttgactcat ttttaaattg tatgtcctgc ttacttaatg tgtttagtgt atttttataa      5400
     gtcatgttat tttatgtaga aagatatttg aaaagatgcg gggtttttac gtcttttgga      5460
     gactggccac aatttctcct agtgtcaact ccaagggact tttccccacc acctcaatat      5520
     tcattaagac aaaagtcaga tgaaggaaat aaaataaata aataaataaa taaataaata      5580
     aataaataaa taaa                                                        5594
//
ID   CR1-58_AAe  repbase;    DNA;    INV; 5159 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-58_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5159
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1145-1145 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..1146
FT                 /product="CR1-58_AAe_1p"
FT                 /translation="MVCNICQQAVSDSDRISCRGYCDKSFHMNCVNADYDL
FT                 REVLATHERNVFWMCNDCADLFARDHFRQLTAGCSNNEIPDISAIKSIKDD
FT                 IAGLKQAFGELSAKVDCNPCTPTLKNPWRAVGRIERTLPNTPKRARMEIQP
FT                 VIERPIQCGTKTASTTVKTISPPEDLVWIYLSAFDPSTSDKDITNLARECL
FT                 GMDSNVNPKVVKLVPKDKDVSTLSFITFKIGLSKNLREIALSNNTWPENVH
FT                 FREFVSYSKNQRPVVKVATAAAPPNTGVQ"
FT   CDS           1191..4874
FT                 /product="CR1-58_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPNPPDPVVLVSSCQQSRSGPEVEDGVGVFQTPFA
FT                 GKYPLNDIHSPPERFSIPSTVADFNSTLLPVSTPGRTVSSLMEAPYPSDLV
FT                 ELSTDSRHHSRPGPSVGCGDGVFQHPSAGEYLFHHDFWPSNSFPAFSFITD
FT                 VFGSRDGVYQHSTSNAVSCPGNFINDVENTTSAFELSTEISGDPERTACRT
FT                 EEASDPLNPVVLPDAVLPSRSGPVVEIGDEVFQASLSGKYSSIRNNALLDS
FT                 CLTFSQPSGNHSPQPDICPGQNGSPAPEHVLTIFYQNVRGLRTKIEDFFLA
FT                 VTDSQYDVIVLTETWLDDRITSAQLFNNQFTVFRNDRNHLNSNKARGGGVL
FT                 IAVSRRLSCCLDPTPVSSSLEHLWIKIKTPYRTTSIGVMYLPPDRKSDVRI
FT                 IESHIDSINSILSHLEVNDFALLFGDYNQSGLLWNTSPNEAPSIDVLRSHF
FT                 PIGCSSLLDGFNLNGLTQINSIFNRNLRMLDLVLTNESVLPYCTVSEALEP
FT                 LVSLDLDHPALETSVRLPLPTQFVEMADLPQLDFHRTDYESLKRILNNADW
FT                 NAIEMCTSVNEAVDYFVMVLMQAISISTPLRRPAPKPQWSNSHLRHLRRQR
FT                 SKALRKYCKSRNPYNKRVFSLASNEYRIYNRYRYMLYTRRTQENLRRNPKQ
FT                 FWSFVNEKRNEGGLPTEIHLGQLVAQTPLEKSNLLAQHFKSVFNDYFATQA
FT                 HAEEATRATPTDAFNFTVFDVSPALVVSAIKKLKSSNASGPDGVPSCIVKK
FT                 CSTELAEPLSMLFNLSLRHGEFPRQWKTSFMFPVYKKGDKQNVENYRGITS
FT                 LSACSKVFEIIVNDALFASCKNYISSDQHGFFPKRSVSTNLAPFISLCVRS
FT                 MDAGTQVDVVYTDLKAAFDRVDHVILLAKLEKLGVSSQLVRWFKSYLTDRV
FT                 LCVKLGSAQSDTFTNQSGVPQGSNLGPLLFSIFINEVGIILPRGCRSFYAD
FT                 DVKLYLVVRCAEDCLRLQNMINCFEQWCSSNFVTLSTSKCNVITFHRKLKP
FT                 ILHEYKIGSQLLQRVDNVRDLGLHLDTALTFNIHYSDIIAKANRQLGFIFK
FT                 IASEFRDPLCLKALYCSLVRSILEFSDVVWCPYQITWITRIEAIQRRFIRY
FT                 ALRSLPWDDPVNLPPYEDRCQLLGLETLQKRRAVNQAVFAAKSLLGELDAP
FT                 ALLDEFEIYAPTRNLRSRAFLNLGHRSANYSLHDPIRFMSARFNEYYEHFD
FT                 FNRSALAFRHSLQRNTVP"
XX
SQ   Sequence 5159 BP; 1384 A; 1191 C; 1056 G; 1528 T; 0 other;
     tctggcatcg ctgtcgtaat agttgttgac aatttttaac ctgaagtatt tttccgattt        60
     tttgtgtttt atttcgttta ttaaacttca catagtgatt gtttgattga ttaagatcct       120
     cgaatttagt aatctctcga agtaactgct attcgtcatt agttattgtg tttttcaacg       180
     gatttgtctt ctgtgcacag ttgagattca ttctctcagt cattattcaa caaacgttct       240
     gtcgacttgc ctacgtcaca tcttctattc atattgaacg caagttgttg ctattaccgg       300
     aagcctacct aaaggcgttt gtgcgaaaca gaaaatatgg tttgcaacat ttgtcaacaa       360
     gccgtttcgg attcagaccg catttcgtgt cgcggctact gtgacaagtc attccatatg       420
     aattgcgtca atgctgacta cgaccttcgt gaggttttgg ctacacacga gcggaatgta       480
     ttctggatgt gtaatgattg tgctgattta ttcgcccgag accactttcg tcaactaact       540
     gcaggttgca gcaataatga aataccagac atttccgcca tcaagtctat caaggatgac       600
     atcgcaggcc tgaagcaagc tttcggtgaa ctttcggcta aagttgattg caacccctgt       660
     actccgaccc tcaaaaatcc ttggcgagca gttggtcgaa ttgaacgtac tttgcccaat       720
     acaccaaaac gtgcgagaat ggaaatacaa cctgttatcg aacgccccat ccaatgtggt       780
     actaaaacag cctcaacaac agtgaaaact atttcaccac cagaggatct ggtttggata       840
     tacctatcgg cttttgatcc tagcaccagc gataaagata ttacgaacct agcgagggaa       900
     tgcctgggta tggattctaa tgtgaatcct aaagttgtca aactggttcc aaaagacaaa       960
     gacgtgtcta cactaagctt catcacgttc aaaattggac taagcaaaaa ccttcgtgaa      1020
     atcgctttat cgaataacac ttggccggaa aatgtgcact tccgtgagtt tgtaagctat      1080
     tcaaaaaacc agcggccagt agtcaaggtt gcaaccgcgg cagccccgcc gaatactgga      1140
     gtccagtaga atcaccttca atcaacccag agcgcgctgc ctgtagctct atggaagccc      1200
     ctaatcctcc cgacccagtc gtgctcgtgt catcatgcca acaaagtcgc tctggccctg      1260
     aggtcgagga tggtgtcggg gtcttccaaa ctccttttgc aggcaagtac ccgcttaatg      1320
     acattcattc gccacctgaa aggttttcaa ttcctagtac tgtcgccgat ttcaactcaa      1380
     ctttactccc cgtttcaaca ccgggccgca ctgtatccag cttaatggaa gccccttatc      1440
     cctccgacct agtcgagctt tcaacagatt cccgtcatca cagtcgtccc ggtcctagtg      1500
     tcggatgtgg agacggggtc ttccaacacc cttctgcagg cgagtatcta ttccatcatg      1560
     atttttggcc gtccaatagt tttccggctt tcagcttcat cactgatgtg ttcggaagta      1620
     gagatggggt ctaccaacat tcgacttcca acgctgtctc atgccctggt aatttcatca      1680
     atgacgtgga aaatacaaca tctgctttcg agttgtcaac ggaaatctca ggtgatccag      1740
     aacgcactgc ctgccgcact gaggaagcct ctgacccact caacccagtc gtgcttcctg      1800
     atgcagttct tccaagtcgt tctggtcctg tggttgagat cggggacgag gtcttccaag      1860
     cttccttatc aggcaagtat tcgtccatta gaaacaatgc tctgcttgat agttgtttga      1920
     ctttcagcca accctctggc aatcattcac cacaacctga catttgtcct ggacaaaatg      1980
     gatctcctgc cccagaacac gtgctgacga ttttctatca aaacgtacgt gggttacgta      2040
     ctaagatcga ggattttttc ctagcagtaa ctgattcgca atacgatgtc atcgttctca      2100
     ccgaaacctg gctcgacgat agaattactt cggcccagct attcaacaat caattcacgg      2160
     tttttcgaaa cgacaggaac catctcaaca gtaataaagc tcgtggtggg ggggtcctga      2220
     ttgctgtgtc caggcgacta agttgttgcc ttgatcctac accggttagc tcttctttgg      2280
     aacatctgtg gatcaaaatc aagaccccgt acagaactac aagtattggt gttatgtatt      2340
     taccccctga tcgcaaatcc gatgtgcgca tcattgagag ccacattgat tcgattaatt      2400
     ctatactctc gcatttggaa gtgaatgatt tcgcgcttct gtttggcgat tacaaccagt      2460
     ctggattatt gtggaacaca tcaccgaacg aagctccttc cattgatgtt ttgcggtcac      2520
     actttccaat tggttgcagc agtctccttg acggattcaa tctcaacggt ttaacacaaa      2580
     tcaattctat tttcaataga aatttgcgta tgcttgatct tgtgcttacg aatgaatctg      2640
     ttctaccata ctgcacagtt tccgaagcgt tagaaccgtt ggtcagcctt gatctagatc      2700
     atcctgcgtt agaaacgtct gtgaggttac ccttgcccac tcaattcgta gagatggctg      2760
     atttgcctca actggacttt cacagaacag attacgaatc cctaaaacgt atcctcaaca      2820
     atgctgactg gaatgcaatc gaaatgtgca cctccgttaa tgaagcagtg gattactttg      2880
     ttatggtttt aatgcaagct atttcgattt ctacccctct gcgcagacct gctccgaaac      2940
     ctcaatggag caatagtcat ctacgtcatt tgcggcgtca gcgttctaaa gcactacgaa      3000
     aatactgtaa atctcgtaac ccttacaata agcgagtgtt ctctttggcc agcaatgaat      3060
     atcggatata caacagatac cggtatatgc tttacacacg tcgcacacag gaaaatctcc      3120
     gaagaaaccc caagcagttc tggtcgttcg tcaatgagaa aaggaatgag ggaggcctcc      3180
     caactgaaat tcatctggga caattggtgg ctcagacgcc gctggagaaa agcaatcttc      3240
     tggctcaaca cttcaaaagc gtattcaacg attactttgc aactcaggct catgctgagg      3300
     aggctacaag agcaactccc actgatgcat tcaactttac agtctttgac gtttctcctg      3360
     ctcttgttgt atctgctatc aaaaagctga aaagttctaa tgcttctggt cctgacggtg      3420
     ttccatcctg tatagtgaaa aagtgttcaa cagagttagc cgaaccttta tcgatgttgt      3480
     tcaacctctc cctacggcat ggcgaatttc cgcgacaatg gaagacatcc ttcatgttcc      3540
     cagtatacaa aaaaggcgat aagcaaaacg tagaaaatta ccgaggcatc acatcactta      3600
     gcgcctgctc aaaagtgttt gaaatcatcg ttaacgatgc tctctttgct agttgcaaga      3660
     attacatatc cagtgatcaa catggatttt tcccaaaacg ctcggtatct acgaatcttg      3720
     ctccgtttat ttcgttatgt gtgaggagta tggacgctgg aactcaagtt gatgttgttt      3780
     atacagatct taaggcggcg tttgaccgcg ttgatcatgt gatactgctg gcaaagttag      3840
     aaaaactagg cgtgtcctca cagttggttc gatggttcaa atcataccta actgatcgtg      3900
     ttctctgtgt gaaacttggt tctgctcagt cggacacatt tactaatcag tcaggggtgc      3960
     ctcagggcag taacctagga ccattgctgt ttagcatttt tattaacgaa gtcggaatta      4020
     ttcttccacg agggtgtcgc tctttctatg ctgacgatgt caaactatat ttagtagttc      4080
     gatgcgccga agactgcctt cggttgcaaa atatgataaa ctgctttgag caatggtgct      4140
     cttctaactt cgttacattg agtacatcaa aatgcaatgt tatcaccttt catcgcaagc      4200
     tgaagccgat tctacatgaa tacaagattg gcagtcaact attacaacga gttgataacg      4260
     ttcgtgattt aggactccat ctcgatacag ctttgacttt caacattcac tactcggaca      4320
     tcatcgctaa agcaaatagg cagctgggat tcatcttcaa aattgctagc gaatttcgtg      4380
     atccattgtg tttgaaagct ctatattgct ccctcgtccg gtcgatatta gaatttagtg      4440
     atgtagtttg gtgtccatat caaataacct ggattactcg aattgaggct atccagagaa      4500
     gattcattcg ctatgctcta cgatcgctac cctgggacga tcctgttaat ttgccacctt      4560
     atgaagaccg atgtcagctt ttgggccttg aaactctaca gaagagaaga gctgtcaacc      4620
     aagcagtatt tgcagctaaa tccttgttag gagaattaga tgctcccgca ttattggacg      4680
     aattcgagat atacgctcca accaggaatc tccgctccag agcctttctt aaccttggac      4740
     accgatccgc caactatagc ttgcacgatc caatacggtt tatgtcagcc agattcaacg      4800
     agtactacga gcattttgac ttcaaccgat cagctctcgc ctttcgacat agcttacaac      4860
     gtaatacggt accgtagggc atgatctctt gatacagttg tttggcgatt ggcattatgt      4920
     ttaattgatt ttaatatgtt tttttttttt gtgtgcttaa ttgttattgt tagatataag      4980
     ttgtaattct tgtgtaatgt tttgtgaaga aaagatatgg ggtttttatg cttttttgag      5040
     taaggtttat atgtcaacca actcaagggg gcttttcctc atcatatatt tcattaagac      5100
     tgagagtcag atgaaattaa ataaataaaa taaataaata aataaataaa cgaatgaaa       5159
//
ID   CR1-59_AAe  repbase;    DNA;    INV; 4935 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-59_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4935
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1146-1146 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 21 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..1206
FT                 /product="CR1-59_AAe_1p"
FT                 /translation="MATQCGTCMEPITGMDVVVCRGYCGGSFHMNGCTSVT
FT                 RAMQSYFTTHKKNLFWMCDRCAELFENSHFRTISCNADEKSPLSMLTSAIT
FT                 ELRTEIKHLNSKPTVSFPPATNVDWPAIDQRRSAKRRRETESVVRASGNCR
FT                 TGSKKTQDDVISVPIFNEEVDEKFWLYLSKIRPDVTVEAVSAMIKANLDLT
FT                 SDPTVVKLVPRDKDISTLSFVSFKVGLDPSLKNKALDPETWPQGLLFREFE
FT                 FFGAPKFRKLLPKKLATPLLQPQASSSPITPIMDLS"
FT   CDS           1092..4856
FT                 /product="CR1-59_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="VRVFRSPKISEITAQKTSYTVITTASFIITNHAHHGP
FT                 ELNFDNPGCNNSSILEAPSSPSTVLPIQPALISRPGPVSGCGDGVFHNVAT
FT                 GEYSSFKHNRMTVTSEGSIHSHVRRLDSCRRNISSSSNIESSVRNSSPGCM
FT                 PASLTEAPNPLVTVEPFLPATSSHPGPVYEKGEGVFQPVNAGKYDCIKNTS
FT                 LPSTFITFSKGKQKSSCSNQHQFSAHRHSSSSTDRLLSRHSPLGCTPASFM
FT                 EAPEPIVTVEPILPATNSHPGPVFDTGEGVFQPVDAGKYESNSSNHLPSSS
FT                 ITFSRDNANDIWIYYQNVRGLRTKIDSLLLTATDCNFDVIMMTETGLDNCI
FT                 TSQQLFGAGFNVFRCDRSPANSSKSRFGGVLIAVAQRYSSRVVHTESGQNL
FT                 EQICVSAMIKGRKIMMCVIYVPPDKSNDVNVINGHVSAMEELCAKCTTGDA
FT                 VLICGDYNQPRMRWCFVDSVIQCDGSQLPLSSSTLLDGMNFLCLGQKNLVR
FT                 NSLDRILDLVFCLSDREAEVNSCSMPLLPVDSHHPPLEISLPSRMVHDDAQ
FT                 MRTGNERPLNFRMIDFDALLAYLSTIDWNVIVTTVDVDEMAESFCSILNDW
FT                 FASNVPRSRPAVSPPWSTSRLRELKRVRNACQRKVRRHRTSFNKRNFHQAS
FT                 NAYRLLNVTLYKSYVLRVQSSLRRNPRDFWRFVNSKRKDSVIPANVYLNEA
FT                 TAASAIESSKLFARHFESIFVASSATNLEIEEAIRDVPCDLADIRTFMITP
FT                 EMVSQAAKKIKKSFVPGPDGLPAVVICRCIAALAQPLSDIFNRSFQQAKFP
FT                 RIWKQSYMTPVFKRGDRHNVSNYRGITSLSAVSKLFETIVCGVMLDATKCY
FT                 ISKDQHGFMPGRSVTTNMLNFTSKCIMSMENKAQVDVIYTDLKAAFDKIDH
FT                 MILLRKLSRLGTSNQLVSWLESYLTERELRVKIDSCVSPPFTNKSGVPQGS
FT                 NLGPLLFVLFFNDAASALGDGYKLVYADDMKLYMVVRTEDDCLCLQHSLNL
FT                 FADWCRRSKLVLSIEKCQVITFHRIVNPILFDYRIEGNTLIRVSSVNDLGI
FT                 QLDSRLTFDLHRSSIITKATRQLGFISKVARDFSDPHCWKSLYCALVRPIL
FT                 ENVSVVWNPYQVTWSLRIERIQKRFVRSALRNLPWRDPANLPPYPDRCRLL
FT                 GLDTLEHRRKIQQSLLVAKVLTGEIDSPELLSLINFRVPNRSLRNTTLLQP
FT                 IFHRTAFGYNEPITTCIREFTAVEDLFNFDEPTERFANRIRSVVT"
XX
SQ   Sequence 4935 BP; 1319 A; 1129 C; 1084 G; 1403 T; 0 other;
     ttggcatcac tgcttttgat gtatgttatg caaactgctt acggtcgtga ttttttctcg        60
     tttttgtgtg ttttcataat cgtaaaatca tcgttttgcg ttctcgtgtt aaaagattga       120
     cattgtgatc gtttcgatac ataagttgat gtttagtgtc gtgtcgtagt gaaataatat       180
     caattagcta gagtgaattg tttttctcta ccacgtcacc cgctacaaaa gcctgctacg       240
     tcgttttatt ttttcgactg aagcgacctc tgctggaata aatcagaatc gctacttgca       300
     tgcaaataat ctcctgtgct tttatcaacg taagccttgg acgcaaactt ggaggctaca       360
     ttcaggcgct acatcatggc aacacagtgt ggaacatgca tggaaccgat cactggtatg       420
     gatgttgtgg tatgtcgtgg ctattgcggt ggctctttcc atatgaatgg atgtacaagc       480
     gtcactcgag ccatgcagtc gtattttaca acccataaaa aaaatctgtt ttggatgtgt       540
     gatagatgtg ctgagttgtt tgaaaattct cattttcgca caatctcgtg caatgctgac       600
     gaaaaatcgc cccttagcat gctcacgtct gcgatcaccg agttgcggac tgaaataaaa       660
     cacttgaatt cgaagcccac agtatcgttt cccccagcaa ctaatgttga ttggcctgcg       720
     atcgatcagc gtagaagcgc taaacgccgt agagagactg aatcagtcgt acgcgccagt       780
     ggaaactgcc gcactggtag caaaaaaacg caggatgatg ttatatctgt tcccattttc       840
     aatgaggaag tggatgaaaa attctggctt tacctatcga aaattcgtcc agatgtgact       900
     gtcgaagccg tatcagccat gataaaagcc aacctcgatt taactagcga tcctactgtg       960
     gtgaaactcg taccgagaga caaggatatc agcacattat cctttgtttc tttcaaagta      1020
     ggactcgacc cgtctcttaa aaataaagct ttggatcctg aaacatggcc acaaggacta      1080
     ctatttcgtg agttcgagtt tttcggagcc ccaaaatttc ggaaattact gcccaaaaaa      1140
     ctagctacac cgttattaca accgcaagct tcatcatcac caatcacgcc catcatggac      1200
     ctgagctaaa tttcgacaat ccgggatgca ataattcaag tattttggaa gccccttcgt      1260
     cccccagcac agtcctgcca atccagcctg cgctcatcag tcgtcccggc cctgtgtctg      1320
     ggtgtggtga tggggtcttc cacaatgttg caacaggcga gtactcttca ttcaaacaca      1380
     atcgtatgac agttacttca gaaggttcta tacattcaca tgtgcgtcgt ttggactctt      1440
     gtcgccgcaa tatctcttcg tcttcaaaca tcgaatcatc tgtgcgtaat tcatcaccgg      1500
     gatgcatgcc tgctagcctt acggaagctc ccaatccact cgtcacagtc gagccattcc      1560
     tgccagcgac cagcagtcat cccggtcctg tgtatgagaa gggagagggg gtcttccaac      1620
     ccgttaatgc aggcaagtac gattgtatta agaacacatc actcccgtca acattcatca      1680
     ctttcagcaa aggaaaacag aaaagttctt gttcgaatca acatcagttc tctgctcacc      1740
     gtcattcatc atcttcaacc gatcgattac tatcacgtca ttcaccactg ggatgcacgc      1800
     ctgctagctt catggaagcc cccgagccga tcgtcacagt cgagccaatc ctgccagcga      1860
     ccaacagtca tcccggtcct gtgttcgata ctggtgaagg ggtcttccaa cccgtagatg      1920
     caggcaagta cgaatccaat tcgagcaatc acctcccctc atcgtccatc actttcagtc      1980
     gtgacaatgc caacgatatc tggatctact accaaaatgt gcgtgggctg aggacgaaaa      2040
     ttgacagcct gttactaaca gccaccgatt gcaactttga cgttatcatg atgaccgaaa      2100
     ctggactgga caactgcatc acctcacaac agctatttgg tgcaggcttc aatgtttttc      2160
     ggtgtgatcg aagccctgcc aatagtagca agtcccgctt tggtggtgtt ttgattgctg      2220
     tagcacaacg atatagcagc cgtgttgttc acactgaaag tggacaaaat ttggagcaaa      2280
     tatgtgtatc tgcgatgatc aaaggtagga agattatgat gtgcgtaata tatgttccac      2340
     cggacaaaag caatgacgta aacgtgatca acggacatgt ttccgcaatg gaggaactct      2400
     gcgcgaaatg cacgactggt gatgctgtcc tcatatgtgg tgattataac caaccacgta      2460
     tgcgctggtg tttcgttgat agcgtcattc aatgcgacgg ttctcaactc ccattgtcca      2520
     gtagcactct tctggatggt atgaattttc tgtgccttgg tcaaaagaat ctcgtccgga      2580
     attcacttga tcgcattctt gatttggttt tttgcctgtc ggatcgtgaa gcggaagtaa      2640
     attcttgttc catgccattg cttcccgttg attctcacca ccccccgctg gagatctctc      2700
     taccatcccg catggtgcat gacgatgcgc agatgcgcac tggaaatgaa cgaccgctta      2760
     acttccgtat gattgatttc gatgctcttt tggcatattt gtcaacaatt gattggaatg      2820
     tcattgtaac caccgttgat gttgatgaaa tggcagaatc tttttgttcc attctgaatg      2880
     actggtttgc ctcgaatgtc cctcgaagtc ggccagcagt ttcacctccg tggagcacga      2940
     gtcgtttgag ggagctaaaa cgtgtacgca atgcctgtca acggaaagtg cgtcgtcatc      3000
     gaacatcatt caataagcgg aatttccatc aagccagtaa tgcgtaccga ctcttgaatg      3060
     tcactcttta caagtcttac gttttgcgcg tacaatcgag tttaagaagg aatccacgtg      3120
     atttttggcg cttcgtgaat tctaaacgta aagattcagt gataccagcc aatgtatatt      3180
     tgaatgaagc gacggctgct tctgcgatag aatcaagcaa gttgtttgca aggcactttg      3240
     agtcaatttt cgtggcaagt tcagcaacaa atttggaaat agaagaagcc atacgtgatg      3300
     ttccttgtga tttagctgac ataagaacgt tcatgataac tccagaaatg gtttcacagg      3360
     ctgcaaaaaa gataaagaag tcgtttgttc cgggtcctga tggtttacct gcagttgtta      3420
     tttgccgctg cattgcagct ttagcacaac cgttaagtga tatcttcaat cgttcattcc      3480
     aacaagcaaa atttcctcgt atctggaaac aatcgtatat gacgcccgtt ttcaagcgtg      3540
     gtgaccgtca taacgttagc aactaccgtg gtattacgag cctatctgct gtctcgaaac      3600
     tgttcgaaac catagtatgt ggagttatgc ttgatgcaac caaatgctac atatccaagg      3660
     atcaacacgg attcatgccc ggccgttcag ttacaacaaa tatgctgaac ttcacgtcaa      3720
     agtgtattat gagtatggag aataaagcgc aagtcgatgt aatttacacc gatttgaagg      3780
     ctgcgttcga taaaattgac cacatgatac tcctgcgcaa actatctcgg cttggaactt      3840
     ctaatcagct cgtctcttgg ctggagtcgt acctcacgga acgggaattg cgggtgaaga      3900
     ttgatagctg cgtatcacca ccgttcacga acaaatccgg cgttccgcaa ggtagcaacc      3960
     ttgggccgtt gctgttcgta ctgtttttta acgatgctgc ttcagctctg ggcgatggat      4020
     acaagcttgt ttacgctgac gatatgaaat tgtatatggt agtacgaaca gaagacgatt      4080
     gtttgtgcct gcagcattca ctgaatctgt ttgctgactg gtgccgtaga agtaaactgg      4140
     tactaagcat cgagaaatgt caggtgatta cttttcaccg tattgtgaat ccaatcttat      4200
     tcgactaccg tattgagggc aatactctta tcagagtttc cagcgtgaac gatctgggga      4260
     ttcagctaga ctcaagattg acattcgact tgcaccgttc atcgatcata acgaaggcaa      4320
     cacgtcagtt aggattcatc tccaaagtgg cgagagattt ttcggatcct cattgctgga      4380
     aatcgctata ctgtgctctt gttcgtccaa ttcttgaaaa tgtgtccgtt gtatggaatc      4440
     cgtatcaagt aacgtggagt ctgaggattg aaagaattca aaaacgattc gttcgctctg      4500
     ccttgaggaa cctgccgtgg agagatcctg ccaacttacc accatatcca gataggtgta      4560
     ggctgcttgg acttgatacc ctggaacatc gacggaaaat ccagcaatcg ctgcttgtgg      4620
     ccaaagtgtt gaccggtgaa attgatagcc cagaactgtt gtcgctgatc aactttcgag      4680
     taccgaaccg atccctccgg aacacgacgt tgctgcagcc aatatttcat aggaccgcgt      4740
     tcgggtataa tgagcctata actacctgta ttcgtgagtt tacggctgtt gaagatctgt      4800
     tcaattttga cgaaccaact gaacgatttg caaatcgaat taggtctgta gtaacttagt      4860
     atagtttttt attcattaag acgaaatatt gtcagatgaa ttattttaaa tacaaataca      4920
     aatacaaata caaat                                                       4935
//
ID   CR1-5B_CQ   repbase;    DNA;    INV; 2935 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_CQ;
KW   CR1-5B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2935
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 5-5 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   The consensus of this family is ~81% identical to that of
CC   CR1-5_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..2863
FT                 /product="CR1-5B_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNTRALEYRLACSAISYDVIAVTETWLKNNTLSSQVF
FT                 GNGYEVFRCDREQFINSQKKDGGGVAIAVRQGLNARIVSSDEWKCVEQVWV
FT                 AIDLADHTVYICVVYIPPDQTNNASVFEINSSSVSTVSSMARPYDELVILG
FT                 DFNLPRLIWRPSRDGFLYADPELSTQTLHVTEFLDNYSSALLQQINQFPNE
FT                 NNVLLDLCFVSCPDIAPPIAIAPAPLVKDVRHHPPLHLSLPVHLASEFTPI
FT                 VCEVRYDYRKSDVPSMLELLRSIDWENTLDKDNLDDAVQTFTNIIGYVIDR
FT                 HVPKKPVTNARVPWQTSELRRVKAAKRSALKKYSKHRTLPLHNYYVRLNSC
FT                 YKRMSKQCHADHEVRTQKKLKSNPKGFWKYINEQRKEIGLPSSMFLGDKTA
FT                 SNTEDICQLFAAKFSSMFTQEDLSQQQITAAANNVLPNGLALNRITIDRSQ
FT                 ILEAATKLKSSNTAGPDGVPSIVLKKCIDGLLDPLAHLFSLSLSTGSFPKL
FT                 WKHAYMFPVHKKGDKRNADNYRGISALCATSKLFELAVMDPVFFFCKNLIS
FT                 DDQHGFMPSRSTTTNLLTFTTFVTDSFTAKSQTDAVYTDLSAAFDKLNHSI
FT                 AIAKLERMGIGGVLLRWFQSYLTGRKISVKIGDWLSAVFEAFSGIAQGSHL
FT                 GPLVFLLYYNDCIHSISVPRLSYADDMKIYCRIDNASDAQVLQQQLINFAE
FT                 WCKINRMVVNPTKCSVISFSRKRNPIKFEYQICGTSIPRENCVKDLGVLLD
FT                 TELTYKQHISYIVSKASRQLGFVFRTAKNFTDIYCLKALYCALVRSTLEYC
FT                 CSVWSPYYENSVARIESVQRRFIRYALRSLPWRDPFRLPSYESRCELINLD
FT                 TLAVRRNVCRSLLVADVLTSRVQCPAILRGLNIFAPIRTFRNSPFLRVPIR
FT                 QTNYAMYSALTGLHRAFNFVASLFDFNLSRDVIKRKFLLFFRR"
XX
SQ   Sequence 2935 BP; 753 A; 797 C; 666 G; 719 T; 0 other;
     atactaccag aacgtcggag gcatgaacac acgggctctc gagtaccgtc tcgcgtgctc        60
     cgctatctct tacgacgtaa tcgcggtgac ggaaacctgg ttaaagaaca acacgctatc       120
     gagtcaagtc ttcggcaacg ggtacgaggt cttcagatgt gatcgcgagc agtttatcaa       180
     cagccagaag aaagacggtg ggggagtagc tatcgcagtc cggcagggac tcaacgcgcg       240
     aatcgtttca tcggacgagt ggaagtgcgt tgagcaagtt tgggtcgcca tcgatcttgc       300
     tgaccatacc gtctacatct gcgttgttta catccctccc gaccaaacca acaacgcaag       360
     cgtatttgaa atcaactcgt cttcggtttc aacagtctct tcaatggcac gtccctacga       420
     tgagctagta attctcggcg acttcaactt gcccagactg atatggcggc caagccggga       480
     tggtttcctg tatgctgatc ccgaactctc aacccagacc ttgcacgtaa cagagttcct       540
     agacaactat agcagcgcac ttctgcagca gatcaaccag ttcccgaacg aaaacaatgt       600
     gctgttagac ctttgtttcg tcagctgccc agatattgca cccccgatag ccatcgcccc       660
     ggcaccgcta gtcaaggatg tccggcacca tccaccgctg cacctatctt tgcctgttca       720
     tttagccagc gaatttacgc ccattgtttg tgaagtccgc tatgactatc gcaaatccga       780
     cgttcccagc atgctagaac tacttcggag cattgactgg gagaacacac ttgacaagga       840
     caatcttgac gatgctgtgc agaccttcac caatattatc ggctatgtca tcgacagaca       900
     cgtcccgaag aaaccagtta cgaacgcccg tgttccatgg caaaccagcg aacttaggag       960
     agtcaaggct gctaagaggt cggcactgaa aaagtactca aaacatcgaa cgttaccatt      1020
     gcacaactac tacgtgcgac tcaacagctg ctacaaaagg atgagcaaac agtgtcatgc      1080
     cgatcacgaa gtacgtaccc aaaagaagct taagtccaat ccgaaaggat tctggaaata      1140
     catcaatgag cagcggaagg aaatcgggct gccgtcgtcg atgttccttg gcgacaagac      1200
     agcttcgaat acggaggaca tctgccagct gtttgccgca aaattttcga gcatgttcac      1260
     acaagaagat ctgtcacaac aacaaatcac cgctgctgcc aacaatgtcc ttccaaacgg      1320
     gctggccctg aaccgcatca caatcgatcg ctcgcagatt ctggaagccg caaccaaact      1380
     gaagtcatcc aacactgcag gtccggacgg agttccatcg atcgtcctga aaaaatgtat      1440
     cgacgggctt ctagatcctc tcgcacatct cttcagtctg tccctctcca ccggctcctt      1500
     cccaaaactc tggaagcacg catatatgtt tccggtgcac aagaaagggg acaaacggaa      1560
     cgcagacaac tatcgcggga tttcagcact gtgcgccact tcgaaactct tcgagctggc      1620
     ggtcatggat ccggtgtttt tcttctgcaa gaaccttatc agcgacgacc agcacggttt      1680
     tatgccttcg cggtcaacca cgacgaatct gctcactttt acgacattcg tgaccgatag      1740
     tttcaccgcc aaatcgcaga ccgacgcggt gtataccgac ctgtcggccg catttgacaa      1800
     gctgaaccat tctattgcaa tcgcaaagct ggaaagaatg ggaatcggtg gggttctcct      1860
     gcgttggttt caatcctatc taaccggccg gaaaattagc gtcaagatcg gtgattggct      1920
     gtccgctgtc tttgaagcct tttcgggaat tgcacaaggc agtcacttgg gaccacttgt      1980
     attcctgctg tactacaacg actgtatcca ttctatctcg gttccacgcc tgtcgtacgc      2040
     ggacgacatg aaaatctact gccggattga caatgcatct gacgctcaag ttctccaaca      2100
     acagctgatc aacttcgcgg aatggtgcaa aattaaccga atggtcgtta atccaaccaa      2160
     atgctccgtt atctcttttt ccagaaaacg caacccgatt aagttcgagt accagatttg      2220
     cggcacttca attcctcgtg agaactgcgt taaggatctg ggtgtgctcc tcgacacgga      2280
     gctgacatac aagcagcaca tctcctacat cgtctccaaa gcatcgcggc aacttggttt      2340
     tgtcttccgt acagccaaaa actttactga catctactgt ttgaaggcac tttattgtgc      2400
     gttggtccgt tccacactag aatactgctg ttctgtgtgg agtccgtact acgagaacag      2460
     cgtagcgcga atcgagagtg tgcagcgaag attcatccga tatgcccttc gatctctacc      2520
     ctggcgggat cccttccgac tgcccagcta cgaaagtcgc tgtgagctga tcaacctgga      2580
     cacgctagca gtacgacgaa atgtgtgccg atcactccta gttgccgacg ttttgacctc      2640
     gagagtgcag tgtccggcca ttctccgtgg attgaacatt ttcgccccca ttcggacttt      2700
     tcggaactcc ccattcctac gtgtccctat ccgtcaaaca aattatgcaa tgtacagtgc      2760
     actgacaggg ctacaccggg cgtttaattt tgtcgcttct ttgttcgatt ttaacttgtc      2820
     tcgtgatgtt atcaaaagga aattcttgtt gttctttaga cgttaattta tgtattagtt      2880
     tgtaaggtaa aacaccattg gggcccgagc ctgttggtgt ccaaataaat aaata           2935
//
ID   CR1-5_AG    repbase;    DNA;    INV; 4525 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   CR1-5_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; CR1 clade; CR1-5_AG; DNA/RNA-binding; PHD finger;
KW   reverse transcriptase.
XX
NM   CR1-5_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4525
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-5_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 16-16 (2003).
XX
DR   [1] (Consensus)
XX
CC   CR1-5_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-5_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-5_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-5_AG is composed of the ATAAAC
CC   microsatellite.
CC   CR1-5_AG encodes two protein sequences: a 378-aa CR1-5_AG-ORF1p
CC   (positions 228-1361) and 968-aa CR1-5_AG-ORF2p (positions
CC   1492-4395). CR1-5_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 5-60). CR1-5_AG-ORF2p is composed
CC   of
CC   the AP endonuclease (aa positions 1-250) and reverse
CC   transcriptase
CC   (aa positions 520-750) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           1492..4395
FT                 /product="CR1-5_AG-ORF2p"
FT                 /translation="MQQAPTDRAACITVYYQNVRGLRSKADEFRLSVLETE
FT                 YDVLVLTETWLDPCIPTALLLGDEYRVYRCDRDATNSSHSRGGGVLIACNV
FT                 SLLSYVLPTLPQLLELTCVCIQLCDHRLFIAAAYLPPNHSMNEEKISALID
FT                 FVANICTTLGPRDRFMLIGDFNQSTLSWTSASEENGAAFDFYEPHARSARS
FT                 VQFVDGLHQSGLYQLNFNTNSSGRILDLIYANWPAASTCSSIRVCEYPLTT
FT                 IDEHHPPLDFDLDNVAPVTIATAIDADKRLNYARVDLPKLERLILSFDNSF
FT                 NCSDYSTIDDATEAFCEFMRSAICECTPVKIPRRGPPWADRTLNALKKEKR
FT                 KAYSDQRAERNSTSRLYYNRVHSLYRRYNRSCHRSYLKQTARSLCKYPRRF
FT                 WSYMDKKRKSAGLPSIIRYDGDSACSLPEMCKLFALRFKDNFASQTTGPED
FT                 VADALSNTPVGALLPMLPVITVDTITSAIKRVKSSYTPGPDGIPAVILKWC
FT                 ASALAPSLMKIFKESLRCGTFPATWKSSWMTPIYKKGCKNDAVNYRGITSL
FT                 SVCAKVFEMLIYEPLLASACNYISVNQHGFVPRRSTTTNLLEFVSKCHKSI
FT                 DNGLQLDAIYTDIKAAFDSVSHSILLAKLDLLGLPNPMIMWLRSYLTDRQY
FT                 SVKLGPYMSSPVHASSGVPQGSNLGPLLFLLFINDATLILPADNHLLYADD
FT                 AKIFRVIREPEDHARLQTSLHEFQCWCNRNALSLCTHKCEVITFSRSRCPS
FT                 LYEYALDGQSLARKQCVKDLGVLLDTKLSFKDQLDHVVATSNRMLGLVINM
FT                 TRELNDIPCTKALYCSLIRSLMEYANIVWWPTAARPLARLESIQRKISRFA
FT                 LRSWNQRLDYRTRCLLLGLPTLSERIRKARLSFITGLLDGRIDSPSLLAAI
FT                 NLYVPARPLRTRAMLALDDRRTQFGSSDPFLLMCRAFNAVSDAFEPRISPT
FT                 EFNDRVSVLNLVP"
FT   CDS           228..1361
FT                 /product="CR1-5_AG-ORF1p"
FT                 /translation="MEDVCYACSEALGPVEGSITCLYCEGTYHLACTKVPI
FT                 SVIDEVKRMASLHWSCIGCTNAIGNPRSKAIKGMGMQVGFQAALTAAVDAM
FT                 KASLVPPVIQEIRDGFAGIATAHSASLQHSNQLLPDALPNGKRRRLFRDAV
FT                 ASSDAVFVDSAAISNVTNTNNTHRIDRPSLPPIITGTNTTSASIPTVSQTP
FT                 RTDYLWLHLSRLAASVTIEQVVSLVCLQLDTADAIAFSLLKAGTVPSPLSA
FT                 VSFKVRIPAALRSKALNAASWPVGLGVREFISLPPRSLHSRTQHTNTYTPI
FT                 PQQPRTQQTPAPLQPRTQHSPAPQQPCTQHNNPHNNPYSPAHIHEPARTQT
FT                 EQSPTDMNCTLPSPTLPSTSRSKTLQTTLVQFFPK"
XX
SQ   Sequence 4525 BP; 1158 A; 1175 C; 947 G; 1245 T; 0 other;
     tcagctttga cagttgtcaa catagcgtgt ctactgctat cgctccgcat ttatccgcta        60
     ttttattggt gtaatctggt tttgctataa tcaacacaag ttttagtgtg tccataagtg       120
     tagtctcgtg accctgccat cgtgttcctg acgaaaacca ccgtgttcgc gatatatttg       180
     gcttttattt gtggctcctt cgacgttcat ctgcagcggc atctaaaatg gaggatgtgt       240
     gttatgcatg ttctgaagca ctgggcccgg ttgaagggtc aattacgtgc ctatattgtg       300
     agggtacata ccatctggcg tgcactaagg tgcctatatc ggtcatcgac gaagtgaaac       360
     ggatggcttc cctgcactgg agttgcattg ggtgtactaa cgccatcggg aatccgcgta       420
     gcaaggcgat caagggcatg ggtatgcagg ttgggtttca ggcagccctc acagctgctg       480
     ttgatgccat gaaggctagc ttggtcccac cggtaataca ggagattcgg gatggctttg       540
     ccggaatcgc cacggcccat tcggcatcct tgcaacatag caatcaattg ctcccagatg       600
     cactaccaaa cggaaaaaga cgaagattat ttcgtgatgc agttgcatcc tcagatgccg       660
     tgtttgttga cagtgcagca atctcaaacg tcacaaatac aaacaacact caccggatcg       720
     atcgtccttc actaccacca ataatcacag gtactaatac aacctccgct tcaataccaa       780
     ctgtttcaca gacaccaaga accgattatt tatggctgca tctttcaagg ttggctgcgt       840
     ccgtcaccat agagcaagtt gtctcgttgg tgtgtttgca gttggacact gcagacgcaa       900
     ttgcttttag tctgctaaaa gcaggaacgg ttcctagccc attgagtgct gtatcgttca       960
     aggtcagaat ccctgctgcc cttcgtagta aggcacttaa cgcagcctcc tggccggtcg      1020
     ggctcggtgt gcgtgagttc atctcgctcc cgccgcgatc tctacattca cgaacacaac      1080
     acacgaacac ttacacaccg ataccgcaac aaccccgtac tcagcagaca ccggcaccac      1140
     tacagcctcg cactcaacac tcaccggcac cacagcagcc ttgtacccaa cacaataatc      1200
     cccacaataa tccatactca cctgcacata tccatgaacc cgcacgaaca caaaccgaac      1260
     aatcaccaac cgatatgaac tgcactctcc cttcacccac tcttccgtcc acgtcacgtt      1320
     caaaaacact tcaaactaca ctggttcaat tttttccgaa gtaaccgcac tacagcagcg      1380
     cacccatatt ttgcgcatac ggctcgagca aatccttcga caacaaacac aatacactca      1440
     ccttctacga taagctcgct caattgcaac accacagcgc ctactaacac tatgcaacaa      1500
     gcacccactg atcgagcggc ttgtatcact gtgtactatc agaatgtgcg tggcctgcgt      1560
     tctaaagccg atgagttccg tttgtcggtt cttgagacgg aatacgatgt attggtactc      1620
     actgaaactt ggctcgatcc ctgtattccc accgctctcc ttctaggaga tgagtatcgt      1680
     gtttaccgat gcgaccggga tgccactaac agctctcact ctcgtggggg tggtgtttta      1740
     attgcatgca acgtttctct tctctcttat gtgcttccta cgttgccgca actgttagaa      1800
     ctcacttgcg tatgtattca gttatgcgac caccgtttgt ttattgccgc tgcctacctg      1860
     cctcctaacc atagcatgaa tgaggagaaa ataagtgcat tgatcgactt cgttgctaat      1920
     atctgcacta ctcttggtcc gagagacagg ttcatgctta ttggtgattt caaccagtct      1980
     acgctatcct ggacatcggc gtcagaggaa aatggagctg cttttgattt ctatgagcct      2040
     catgcacgct ccgcgcgcag tgtccagttc gttgatggtt tgcatcagag tggactatac      2100
     cagcttaact tcaatactaa ctcatcgggg cgaatacttg acctaattta cgcaaattgg      2160
     ccagctgcat ctacatgttc ttcaatacgt gtctgtgaat atccccttac tactatcgac      2220
     gaacaccacc ctccgcttga ctttgatttg gacaacgtag ccccagttac gatcgctaca      2280
     gccattgatg ctgataaaag gctgaattat gctcgtgttg accttccaaa attggagcga      2340
     ttgattttat cttttgacaa ttcttttaac tgttcggact attcaaccat tgacgatgcc      2400
     acagaggctt tttgtgagtt catgagatct gctatatgtg aatgcactcc tgttaaaatt      2460
     cctcgtcgtg gaccaccatg ggctgatcgc acactaaatg cattaaaaaa agaaaaaaga      2520
     aaagcctatt ctgatcaacg agcagaacga aacagcacgt cacgtcttta ttacaacaga      2580
     gttcattctc tctatcgccg atataataga tcctgtcacc gaagttattt gaaacaaact      2640
     gcacgttccc tctgcaagta ccctaggcgc ttttggagtt atatggacaa aaaacgaaaa      2700
     tctgctgggc taccaagcat tatacgttat gacggtgaca gtgcctgttc cctgccagaa      2760
     atgtgtaaat tgtttgcctt gcgcttcaag gacaacttcg cttctcaaac tactggtcca      2820
     gaagatgtgg ccgatgctct ctctaacaca cctgttggtg cactgctccc tatgctacca      2880
     gtcatcactg tcgatacgat cacctctgcc atcaaacgtg tcaaatcctc atatacccct      2940
     ggcccagatg gtataccggc cgttatccta aagtggtgtg cttctgcgct tgctccctcg      3000
     ctgatgaaga tttttaagga gtccctgaga tgtggaacct ttcctgccac ttggaaatct      3060
     tcctggatga cacccatcta caagaagggc tgtaagaatg atgctgtaaa ctatcgtggc      3120
     ataacctcac tcagcgtgtg tgcaaaggtg ttcgaaatgc taatctacga gccattgttg      3180
     gcctcggcct gcaactatat tagtgtgaat caacatggtt ttgtacccag gcgatctaca      3240
     acgactaatc tactagaatt tgttagcaaa tgccataaat ctatcgataa cggtttacaa      3300
     ctagatgcta tttatacgga tatcaaggca gcattcgaca gtgtatcgca ctccatcttg      3360
     ctagcgaaac tcgacttact tggtctccca aaccctatga taatgtggct tagatcgtac      3420
     cttacagatc gtcaatattc tgtgaagtta ggcccgtaca tgtcaagtcc agtgcatgca      3480
     tcttctggag tcccgcaggg cagcaacctg ggtcctttgc tgttccttct tttcatcaac      3540
     gacgcgacat tgatccttcc ggctgataat catctactgt acgcagatga cgcgaaaatt      3600
     tttcgtgtta ttcgtgaacc agaagaccac gcccgactgc aaacttcctt gcatgagttc      3660
     cagtgttggt gcaaccgtaa tgctttatcc ctatgcacac ataaatgtga agtcatcact      3720
     ttcagtcgtt ctcgctgccc atcattgtat gaatatgcgc ttgatggaca gtccttggcg      3780
     cgaaaacaat gtgttaagga tctaggtgtt ttgctcgata caaaactatc atttaaggat      3840
     cagctggatc acgtagtagc caccagcaat agaatgctag gactagttat caatatgact      3900
     cgcgagctta atgatatacc ttgcaccaag gcgctctatt gctcacttat ccggtcgttg      3960
     atggaatatg caaatatcgt atggtggcca actgcagcgc gtccgttagc tcgattggaa      4020
     tcaatccagc gcaaaatttc acgatttgca cttcgctcat ggaaccaaag gctcgattac      4080
     cggactaggt gtttactact cgggctaccc accctaagtg agcgaatacg aaaagccagg      4140
     ttgtcgttca tcacgggact tctcgacggc cgtattgact ctccgtcact actggctgcc      4200
     atcaacctgt acgttccggc caggccgctc cggactcggg caatgttggc cctcgacgac      4260
     cgtagaacgc aatttggctc ctctgacccg ttcctactca tgtgccgtgc tttcaacgca      4320
     gtcagcgacg cttttgagcc gaggatttcg ccaactgagt ttaatgatcg tgtttctgtg      4380
     ttaaatttgg ttccatagtg cacattttta tgttctatgt tattgtaatc cattgtaaag      4440
     aactcattgt aaaacattgc taaaatggtt cgagagggca ttattgtcca tcgatagaca      4500
     aataaacata aacataaaca taaac                                            4525
//
ID   CR1-5_CQ    repbase;    DNA;    INV; 4762 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4762
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 6-6 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1245
FT                 /product="CR1-5_CQ_1p"
FT                 /translation="MASACDYCAKQVKDEEPFVKCMGFCEGVVHMRCTKTG
FT                 SLKMNTSFLKIINECFNMFWMCDECSKLMKVARFRTVMESVGDAVDHMQDE
FT                 QDRKNSELRDLITENGKQLLLLSKRVSSLTPTANKLGTPRNKPTPKRTRDS
FT                 NPVPPKPLVFGTNEVASASVTCIPPEESLFRLYVTRFANHTTATQVEGLVK
FT                 NAIGQNELVQVTALVKKGVDPLTLPFISFKVAVNLGHKAAILNPAIWPGNC
FT                 GFREFEDLQRKSSSPSNGDGQRAKKPMLSLATIPITLTPSGSASPNPDNRD
FT                 VEPFLTPRSGNSDGAPAPMDH"
FT   CDS           1188..4682
FT                 /product="CR1-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TVFDTPLGELRRGAGPNGSLAPVFGCRLTSGCTTQST
FT                 EEAPTLSGTVAQSAASVHLSHPDPAAGSRVGVFQSSQSGKYAHRLSPSPPD
FT                 AYPVSSATPSSCLSRHNPDGDLRAAAPPQPTACWTSGCTTQSTEEAPTLSG
FT                 TVAQSAASVHLSHPDPAAGSRVGVFQSSQSGKYAHRLSPSPPDAYPVSSAT
FT                 PLRRPGRGQKSRLPCNESLNIYYQNVGGMNTRALEYCLACSAVSYDVIAVT
FT                 ETWLKASTLSTQVFGNGYEVFRGDREQFVNSQKRDGGGVAIAVRHGLRARI
FT                 VVSDEWKCAEQVWVAIDLDDHTVFICAAYIPPDQTSSANVFEINAASVLAV
FT                 SAMARPYDELIVLGDFNLPGLIWRPSGDGFLYADSALSTQAAHVTEFLDSY
FT                 SSSLLQQINSFPNENNVVLDLCFVSCPDTAPPLVIAPAPLVKDVRHHPPLL
FT                 LSLPVRLATEHTPVVCEVRYDYRNLDVPSMLELLQSIDWENTLDKDNLDEA
FT                 VQTFTNILSYAIDRHVPKKPVTNARVPWQTSELRRVKAAKRSALKKFSKHR
FT                 TLPLHNYYVRLNSCYKRMSRQCHADHEVRTQKKLKSNPKGFWKYINEQRKE
FT                 IGLPSSMFLGDETASNTEEICQLFAEKFSSVFTLEDLQPEQVTAAASNVPT
FT                 NGLGLNSIRIDRSKILEAVAKLKISNTTGPDGVPSIVLKKCIDGLLEPLYL
FT                 LFNLSLSIGSFPKLWKHAFMFPVHKKGDKRNVDNYRGISALCAVSKLFELA
FT                 VMAPVFFFCKNLISEDQHGFMPSRSTTTNLLTFTTFVTDSFTARSQTDAVY
FT                 TDLSAAFDKLNHAIAIAKLERMGIGGTLLSWFQSYLADRKINVKIGDCLSA
FT                 ALMAFSGIAQGSHLGPLVFLLYYNDCNHSLSGPRLSYADDMKIYCQVNNAA
FT                 DAQALQQDLNIFADWCETNRMVVNPTKCSVITFSKKRNPIKFDYQICGTLI
FT                 PRENCVKDLGVLLDTELTYKQHISYMISKASRQLGFIFRAAKGFTDVYCLK
FT                 ALYCALVRSTLEYCSAVWSPYYENSAVRIESVQRRFIRFALRRLPWRDPFH
FT                 LPSYESRCKLINLDTLAVRRNVSRALVISDALTSRLQCPAILRGLDIMAPL
FT                 RTLRNTPFLRVPVRRTNYAMHSALTGLHRAFNFVASLFDFNLSRDVIKNKF
FT                 LLFFRR"
XX
SQ   Sequence 4762 BP; 1137 A; 1339 C; 1166 G; 1120 T; 0 other;
     cacttttttc tccgtgtcta cgtctacggc gattgtttac gtttgcgata gcgctgatat        60
     tttttgcgat tttacgtgtg ttttgcgcaa gtttccgaag tttattcgcg ttgtgcggtc       120
     cgtttacgct aaccaccaat cccggaaagt gtcgaacggt cggttcccgt ggcctggttg       180
     ctggttgaaa cctgcgtgtt tttactccgt tgagtgaacc tccaacacaa catcgtcgtt       240
     aagggcatct ctaccggcgg tgtttattgg ttgcggctgc acaaattatt tgccgaaatt       300
     ttggacatgg cttctgcttg cgattactgc gccaaacagg tcaaggatga ggagccgttc       360
     gttaagtgca tgggcttctg cgaaggggtc gtacatatgc gctgtaccaa gacgggcagc       420
     ttgaagatga acacctcgtt cctgaagatc atcaacgaat gcttcaatat gttttggatg       480
     tgcgacgagt gttcgaagct gatgaaggtg gctcgtttcc gcaccgtaat ggagtccgtc       540
     ggcgatgcgg tcgaccacat gcaggatgaa caagaccgca aaaactccga gctgcgggac       600
     ctgatcactg agaatgggaa gcagctgctg ctgctctcca agcgcgtcag cagcctaaca       660
     ccaactgcca ataaattagg tacgccaagg aataagccta ctccgaaacg tacccgtgac       720
     tccaatcctg ttccgccgaa gcccttggtg tttgggacga acgaagtagc gagtgcaagt       780
     gtcacttgca tccccccaga agaaagtctg ttccggctgt acgtgacacg cttcgccaac       840
     cacacgactg ctacacaagt ggaaggactc gtgaaaaatg ccatcggtca gaacgaactg       900
     gttcaagtga ccgcattggt caaaaagggg gtcgatccgc taactctacc gttcatctcg       960
     ttcaaagtcg cggtgaatct tggacacaag gcggcgattc taaacccagc aatctggcct      1020
     ggcaactgcg gctttagaga atttgaggac ctgcaacgaa aatcttcttc gccgagcaat      1080
     ggtgatggac aacgggcaaa aaaaccaatg ctgtctctcg cgaccatacc gatcactctc      1140
     acaccatcag gttctgccag ccccaatcct gacaatcgcg acgttgaacc gtttttgaca      1200
     ccccgctcgg ggaactcaga cggggcgccg gccccaatgg atcactagct ccagtattcg      1260
     gctgccgctt gacatcggga tgcacgaccc aaagtaccga ggaagccccg actctctccg      1320
     gcacagtcgc gcagtccgca gccagcgttc atcttagtca tcccgatcct gctgccggaa      1380
     gtagagtcgg ggtcttccag tcgtcacagt caggcaagta cgcacaccgt ctgagccctt      1440
     cccctcctga tgcatatccg gtttccagtg ctactccttc aagctgcttg agccgacaca      1500
     atcccgacgg cgacctacga gctgctgcac cgccgcagcc cacggcatgt tggacatcgg      1560
     gatgcacgac ccaaagtacc gaggaagccc cgactctctc cggcacagtc gcgcagtccg      1620
     cagccagcgt tcatcttagt catcccgatc ctgctgccgg aagtagagtc ggggtcttcc      1680
     agtcgtcaca gtcaggcaag tacgcacacc gtctgagccc ttcccctcct gatgcatatc      1740
     cggtttccag tgccactccc ttaaggcgtc cgggacgagg ccaaaagtcg cgattgccgt      1800
     gtaacgagtc gctgaacatc tactaccaga acgtcggtgg catgaacaca cgagctctgg      1860
     agtactgtct cgcatgctcc gccgtctcat atgatgttat cgcagtaacg gagacctggt      1920
     taaaggccag cacactgtcc actcaagttt tcgggaacgg ctacgaggtc ttcaggggtg      1980
     atcgcgagca gttcgtcaac agccagaaga gagatggcgg gggcgttgct atcgcggttc      2040
     gtcacggact tcgagcgcga attgttgtgt ccgatgaatg gaagtgtgcc gagcaagtat      2100
     gggtcgccat cgatctcgat gaccataccg tcttcatctg cgctgcgtac atcccccccg      2160
     atcaaaccag cagtgcaaat gtgtttgaaa tcaacgcagc ttctgttttg gccgtctctg      2220
     ccatggcccg cccctacgat gaactcatcg tcctcggaga tttcaacctg ccaggattga      2280
     tctggcgtcc cagcggcgat ggttttctgt atgccgactc tgcgctttca acccaggccg      2340
     cgcacgtgac ggagtttctg gacagctatt ccagctcctt gcttcaacag atcaactctt      2400
     tcccgaacga aaacaacgtg gtgttggacc tctgctttgt cagctgccca gataccgcac      2460
     ccccgctagt catcgctccg gcaccgctag ttaaggatgt ccggcatcat ccgccgctgc      2520
     tgctgtccct gccggtccgt ttggccaccg agcacacgcc agttgtttgt gaagtccgct      2580
     atgactatcg caatttagac gttcccagca tgttagagct cctgcaaagc attgattggg      2640
     agaacacact tgacaaggat aatctcgacg aggccgtaca gacctttacc aacattctta      2700
     gctacgccat cgacaggcac gtaccgaaga aacctgttac gaacgctcgt gttccatggc      2760
     aaactagcga gcttaggaga gtcaaagctg caaagaggtc ggcactgaaa aaattctcca      2820
     aacatcggac gttacctttg cacaactatt acgtgcgact caacagctgc tacaaaagga      2880
     tgagtagaca gtgtcatgcc gatcacgaag tacgtaccca gaagaaactc aagtccaacc      2940
     cgaaaggatt ttggaagtac atcaacgagc agcggaaaga aatcgggtta ccgtcatcta      3000
     tgttcctagg agacgaaaca gcatcgaata cggaggagat ctgccagctg ttcgccgaga      3060
     aattttcgag cgtgtttacg ctagaggacc tgcaaccaga acaagtcacc gccgccgcca      3120
     gcaacgtccc aacaaacggt ctgggtctga acagcattag aatcgatcgc tccaagattc      3180
     tggaagccgt agccaagctc aagatatcca acacgacagg cccggacgga gttccatcga      3240
     ttgtcctgaa aaaatgcatc gacgggctcc tggagcctct ctatctcctc ttcaatctat      3300
     ccctctctat tggatcattt ccgaagctct ggaagcacgc cttcatgttt ccggtacaca      3360
     agaaaggtga taaacggaac gtggacaact atcgtggaat atcagcactg tgcgccgtct      3420
     cgaaactttt cgagctagcg gtcatggctc cagttttctt cttctgcaaa aacctgatca      3480
     gcgaggacca gcacgggttt atgccatcgc ggtcaacaac gacgaatcta ctcacgttta      3540
     cgacgttcgt gaccgacagc ttcaccgcca gatcgcaaac cgacgcggtg tacaccgacc      3600
     tgtcggcagc gttcgacaag ctgaatcacg ctattgcgat cgcaaaactg gaaaggatgg      3660
     gaatcggcgg gactctcctc agttggttcc agtcctatct ggccgaccgg aaaatcaacg      3720
     tcaagattgg agactgcttg tcggctgcct tgatggcctt ttcaggtatc gcacagggaa      3780
     gtcatctcgg accactcgtc ttccttctat actacaacga ctgcaaccac tccctctctg      3840
     gaccgcgtct gtcctacgca gacgacatga agatctactg tcaagtgaat aatgcagccg      3900
     acgctcaagc cctccaacag gatctgaaca tcttcgcgga ctggtgtgaa acaaatcgaa      3960
     tggtcgtcaa ccccaccaag tgctctgtca tcaccttctc caagaaacgc aacccaatca      4020
     agtttgacta ccagatctgc ggcacattaa ttccccggga gaactgtgtc aaggacctcg      4080
     gcgtgcttct tgacacggaa ctcacataca agcagcacat atcatacatg atttccaaag      4140
     cctcgcgaca gctcggcttc atcttccgtg cagcaaaagg ttttacagat gtctactgtt      4200
     tgaaggctct gtactgcgct ttggtccgtt caacgctgga gtattgttct gccgtatgga      4260
     gcccctacta cgaaaacagt gcggtgcgga ttgagagtgt gcagcgaaga tttatccggt      4320
     tcgcgctccg tcgactcccc tggcgggatc catttcatct gcctagttac gaaagccgct      4380
     gtaaactgat caaccttgac accttagcag tgcgtagaaa tgtcagccgt gcactcgtaa      4440
     tctccgacgc tctgacttct agattgcagt gcccagccat ccttcgagga ctagacatta      4500
     tggccccgct tcgaacgctt cgtaacactc cgttcttgcg tgttcctgtt cgccggacga      4560
     actatgctat gcatagcgcg ttgacgggac tacacagagc attcaatttt gtagcttctt      4620
     tgttcgattt taatctgtcc cgtgacgtca tcaaaaataa gtttttattg ttttttaggc      4680
     gataatttgt gtacatgtac ttagttttaa gcacaccatt tgggcatgtg gtgcctgttg      4740
     gtgttaaaca aataaacaaa ta                                               4762
//
ID   CR1-5_DEl   repbase;    DNA;    INV; 1700 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1700
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 552-552 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1700 BP; 488 A; 365 C; 310 G; 537 T; 0 other;
     ttctttagga cgtttactgg atttgtgttt ttgtgtcaaa tccagaaggc gtttgtgttt        60
     taagaacgtt gccacttacg caacctgaag atccctatca cccagcttta gactgactat       120
     gacagagtta aaggaaaaaa tgttggaaag actgctttcg taagacaaac tttggtcgct       180
     taaatacttg tatatctggc tttgactggt ccgaacttta ttcatgcact aacatggctg       240
     aggccattaa tatcttttat aatgcattga actccttctt ccaaaagtgt gttccgttac       300
     actatccgtc taactccaat aaacctccat ggtttaataa agagttgtca cgtctaaaaa       360
     atgttaagtc cagactttat aataaatata aagcgtgtgg ttcgcaagcc gccttttcca       420
     gatacttaag tgctcggtcg aattttaccg taggatccag ttttcacaag atccaaaaca       480
     gttttataat tttgttaaca ctaagcgtaa atccgcctct tacccagcat cgctatcgtt       540
     tgaaaattcc acggcaaaca ctgatcaggc aattgccgat ctcagttttt ccaaacgaca       600
     tattcagctt cgtccagtac acatcaatct tattcatatg ccatgcaagt ctaacttaat       660
     cttttgtccg aatttaagtg aaaactccgt tctcgttgat ctgcaaaggg ttaagccagt       720
     ctactcaccg ggtcctgacg gtgttcaggc tgtgtgctta gatactgcgc agagaccctg       780
     tgcagaccac tacataaatt gattacccta tccctagaaa cctctgactt cccacctatt       840
     tggaaggagt catttgttat tccccttcat aaaaagggaa ataaatcaaa tacaagcaat       900
     tatagaggta tttccaagtt gtccgctatc cccaagcttt tcgaaaacat tataaccccc       960
     acttgcaaca tctctgtagg tcgattatat ccccgtgcca acacgggttt ataagcgcag      1020
     gtctacgacg acaaacctct tggaactaac gtctttcgtt ataaatggct tcagaaataa      1080
     ccttcagact gacgttgttt acactgactt tagtaaagcg tttgattctg taaatcactc      1140
     tcttcttgta cggaagttag acttattagg gttttcaaat gatcttctaa catggatttt      1200
     gagttatctg agtggtagga cacaacgagt cctctttaaa agctccgtct ctaaaataat      1260
     ccaagttact tcaggcgtcc cacaagggag ctctagtttt gacaaagtcg cgtgtcctta      1320
     tgtacgcaga tgacgtcaag ttatgcctgc aacatagcga tatttccctc tgttcagatt      1380
     tacaaacgga ccttaatgct tttcaaacat ggtgttctgt aaatctattg gacttaaata      1440
     gcactaaatg caaagtaatg acattttatc gggtcaaccc acatatgcca cgttaggtgg      1500
     ttgtgagttg actagaatta gacatattga tgaccttggc gtccttttgg acccaaaact      1560
     taaattttct gaccatattt ctccatggtg aataaagcca ggggagtgct tggatttata      1620
     aaaaggtggt ctaaggaatt tgatgatcca tatgtcacaa aaactttgtt catttcatta      1680
     gttcgtccaa ttctggagta                                                  1700
//
ID   CR1-5_DK    repbase;    DNA;    INV; 2924 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2924
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1332-1332 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2924 BP; 788 A; 639 C; 560 G; 935 T; 2 other;
     atggtaccaa caacaacagc tgtggccgtc tgacgtcgat gtttatggtt tggatagtac        60
     acaaccttat ctgcctattg cgggtctgtt ggatgctaca gacaactcag tcaaagttcg       120
     atccatatcg ctgctcaagg ctgccactgg attggttgct tgtgatctgc gccccgcatc       180
     atctaatcct acacctgttg atgttttggc tgcgctgcct gctcatcatg aacctgcgcc       240
     gcccctctct tcttcgtact gcgacagctc cagccggaaa gtatttttcc aaaatatatc       300
     cggcatgcga acgaagacgg acgctgttta tttggcatcg tcgcagtgtg actttgacgt       360
     tattatatta gttgaaactt ggcttaatat ggatttcttc gacaatgaat tcttcgaccc       420
     caatttatac caagtattcc gaaaggatcg agatgctgcg aaaacactgt gctctagagg       480
     tggaggcgtc cttatagcgg ttcggcgaag tctgtgctgc acatctatcc ggctttggaa       540
     tgaggactct attctggatc aactttgcgt gtctcttgct ggacctttgg aaaccatttt       600
     tctggtggtt tcatatatac cgccatgcag cgcattcgag ctttacaagg cccacgtgga       660
     taatatcacc cgcattagca atgatctgga ggattcgcag ttcatctgtg tcttggcgac       720
     ttcaacctct cttcgttggt gtgggtgcat gatgtggact ctcagtaatg gttcccagta       780
     acctgcatct gccgcatgaa attttggtga ttgatgatct cttcagtatg ggattggtcc       840
     aaattaatca tgtatttaat aaattaaata ggcttctaga cttagttttc gtgagtcagg       900
     acttacactt gaacttagcg tctagtaata atcctctttc ggattgtgat gttcaccacc       960
     agcctttatt attatcaata tctacgtata tattctctcc aagtaattca ccaacatatt      1020
     ccatgtatat taatcctagc aatttaaatt tacttcggaa tgatatcgca aatattaatg      1080
     ggtggaggtc ctttcgcatg ttaatttgga cacttgctat gataactttc tctcatattt      1140
     tcagtcatca ttaatagaca tgcgagaaaa aggttccacg gttcttataa actgccctgg      1200
     tatacgccag gtctaaaaaa atacaagaac cttaggaata aatttataaa cgtttattga      1260
     aaatggtaac tcttcagatt ttgaaagata caggcagcac aagcgcgaat ttgaattcct      1320
     aaataaattc ctatataatc aatatatagc agatgtggaa cgaaatttaa ttaataaccc      1380
     gaaatcattt tggcacttta ttaattcgca acttcctcta ttccttctcg tatgttttac      1440
     aatggctcaa ctgcatcgtc tgatcttgaa ggggcaaatc tttttgccaa atactttgcc      1500
     tcaaactttg agccaacttc tctatggagc gatgatgcaa tgctggttcc attgcttcga      1560
     gctcaaacat tgggtgcctg caggtctccg aatctgactg tcacctcgca gcggcgactt      1620
     caatgactcg gaaaaattcg attgtgatgg cctctcacct ttatttaaaa ttggcttcaa      1680
     attattttta ataaatctct cattagtgga gtatttattc agagatggaa gctggcacta      1740
     gttaccccca tccttaagtc gggtgctaaa actatagtct caaactacag accaatttca      1800
     aagcttagca atgtctccaa gatgtttgag cgaattgtgg ctaaacagct cgcctttctt      1860
     gttggtaata ccattakccc caatcagcat ggttttatgc ctggaaggtc gactaccaca      1920
     aaccttgctg tattccacca tttctgcact aatgccttct tgagtcacaa ccaagtggat      1980
     gttgtataca cggattttgc taaagcgttt gataaagtga gccataakgt gctattagct      2040
     aagctaaaaa aatgggcttt cactcatcta tgttgacctg gttaagttcc tatcttaatg      2100
     gccgcaggta tagagtggta tgtaatggtc attcctcgga tccgtatatt gcgacttctg      2160
     gccttcctca ggggagtgcc ttgggcccat ttcttttcat cctgttcatt aacgatatag      2220
     ggtcatgctt taaaaatgct gaatttctca tgtttgctga tgatttaaaa atattcaaat      2280
     cagtgaattc agctcttgat tgtgctaagc tgcaggcttc gcaatgcggt tcaattttca      2340
     gacccttaca ccaaactcag cctatttttt actttcgtag gtctaaggtg gagtatgcct      2400
     cctttatatg gaacccttcg gagccataca cacaaaccga ctggagcgca caaaaaaaat      2460
     ttctatcctt cgccctttgc tcccttcact tccacgatcc cgctccttct tattccgcta      2520
     aatgccgact agtgcattta gcttcattag aagatagaag agcagtgtca gcaattatag      2580
     taatttttga tcttatttct ggaaaaattg attgccccgc tttactaagc cttgtaaact      2640
     tttgtgttcc cggtaggcag ttaagatcac tggaaccttt ctctactccg ttttgtagaa      2700
     ccaattatgc ccttaatgag ccaataacca gggctttatt atattttaac aagctaccac      2760
     ccaacatgcg gctggaccca acctccccca gagacttggt caaaaggcaa ttatatttat      2820
     acttagctcg aaatgtaact taggattaat ttaaatttaa gacttatgta gccagataag      2880
     gagtctatcc gttggcgaaa taaataaata aataaataaa taaa                       2924
//
ID   CR1-5_DRh   repbase;    DNA;    INV; 4483 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4483
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1678-1678 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The consensus is ~93% identical to
CC   that of CR1-2_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           596..1486
FT                 /product="CR1-5_DRh_1p"
FT                 /translation="MALVCSKKNCTLASSTKDPFIFCWLCDSMMHVKCAGF
FT                 TGRVKDFIDLNSGLMWSCGSCKEMVVEMSGFMKQTRDSXLNISGAFKQLNE
FT                 GFNSVCAQFNNKKLLTESPKRKKASLTAVNMIVESTPNPNLVAAVSVDTGV
FT                 NEPTVPMDTASSGGVPVSRIKSTVLAKSKNSLPTVPIGTVGTVPGSQPSEV
FT                 QTAAWGRKKLSVVSQRKQLFVSRFTPDTTSEDVLEFIREKFPSEDIAVEQF
FT                 RFSYARRISSFKIFAPPDVFNVLLSEXFWLNDDLVIKEFVPNKPRTNNRPS
FT                 TVPKN"
FT   CDS           join(1531..1695,1680..4316)
FT                 /product="CR1-5_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKLHKLYADSSAFTEDILAFTETWLKPEISDSEVLSN
FT                 NFNTYRTDRPSRRGGAVYGGGGVLIAVTSSLTSERILTHIPNEIEFVSVKV
FT                 SLQSLSIFVTCSYIPPGSDLVIYEHHLSAIKSVLSLLSNRDLLIVLGDFNL
FT                 PDISWSPPTDSLVAIPLSAHDFVDGLLELSLQQVSFIRNSLNRQLDLVFVS
FT                 DPSEVTVCRIDALVVPEDRYHPTMELTICLPCSDTLSPLVPPTKMRCFRKC
FT                 DYNKLNDMISHYNWTDLYNCTDIESATELFYIALNTFFNECVPDRFPLNLN
FT                 RPPWFTNALQRLKNLKSNTYKKYKKSGKPSDFSKYVVARSDFNVLNSHCYS
FT                 MYLNRCKFEFSNDPKQFFNFVNAKRKSSALPSSVRLNSTEASTDSDIADLF
FT                 AEFFQTTYSSTAWSNSNYPNPLNRANCIFTPLITENSLLIDLETTTPTYSP
FT                 GPDGLPGCVLKFCASTICKPILKLFNLSISSSVFPTIWKDSFIIPLHKKGA
FT                 KADAKNYRGISKLSAIPKAFERIITSHLQHLCSSLISPCQHGFVKRRSTTT
FT                 NLLELSSIVINGFQKKMQTDVIYTDFSKAFDSVNHSLLLFKLDLLGFPGNL
FT                 LTWISSYLNGRTQRVIFKNSVSKLIYVTSGVPQGSHLGPLLFTLFINDLPS
FT                 IITHSRVLMYADDVKLCLSYNDIASGFNLQSDIDCFHEWCEYNLLKLNYLK
FT                 CNVMTFYRGTPTFISYFLENTPLDRIYSVNDLGVLLDPKLKFDCHIMSTVN
FT                 KAMSVLGFIKRWSKEFDDPYTTKLLFTSLVRPILEYCSSVWSPQYQVHIDR
FT                 IESVQKKFLLFALRSLNWDQNVRLPSYQSRLLLLNLPTLVNRRTMLGTIFM
FT                 QNLIRGDIDSAELVNRLTFNVPVRLTRNYIPLNLPRCSSNFCLHEPFRVLC
FT                 NNYNNLYHLICISTSIPLLKTNILTHLLFS"
XX
SQ   Sequence 4483 BP; 1206 A; 890 C; 772 G; 1613 T; 2 other;
     cgatttagcg tcgcttgtga acagttgtgt ttacctttgt gctctgagtt tttgtatttt        60
     ttcagtgatt ttgtgcgagt gttttgtgtt catttattta caaagcttaa cttaatatct       120
     gtgttagaaa ttttaaatag atctcccagt aaacgggtat gtgtttataa ttgttttaac       180
     atttctatta gatttgttta atctcgtagc tttgttagtg taatttacgc tctctatact       240
     tgctagaact cttttactcc ctctcaatct ctcccgctct attttataac tgtaatttac       300
     tctctatgaa cttctggtag actttttcgt ttatttctct aacttctctc tctctctctc       360
     ttgcatgctt tacattgcat ttgtttattg attaaagttg ttgtgttgca caagccacgc       420
     tcagtcgata taagatttat tctctcgtgc tctctttatt cgatttaatt cgtgatctcg       480
     cgctcttact tttttcgtgt tttgtcccct tgtggttttt ggatttgatc ccagtgccaa       540
     atttactttg aggtattttt catattctta tttttttatt tgctttaaac ttacaatggc       600
     tcttgtctgt tctaagaaaa attgtactct tgcgtcttca actaaagacc cttttatttt       660
     ttgctggctc tgcgattcga tgatgcacgt taaatgtgca ggatttactg gcagagtcaa       720
     agatttcatt gatcttaatt ctggtctcat gtggtcatgt gggtcctgca aggaaatggt       780
     agttgagatg agcggcttta tgaagcagac tcgagacagc ntattgaata tctcaggagc       840
     ttttaaacaa ctcaatgagg ggttcaattc cgtctgtgcc cagtttaata ataaaaaatt       900
     attaaccgag tcgcctaaac gtaaaaaagc cagtttaacc gccgttaata tgattgtgga       960
     atccacccca aatccgaact tggtagcagc agtttctgtt gacacagggg taaatgaacc      1020
     aactgtgcct atggatacag ctagttcggg tggagtccct gtttccagaa taaaatctac      1080
     agtactggct aagtcaaaga attcgttgcc gaccgtacct ataggtacag taggcaccgt      1140
     tcctggttct cagcccagtg aggttcagac tgctgcttgg gggcgtaaga aactttcagt      1200
     tgtttcacaa aggaagcaat tatttgtttc tagattcacc ccagatacca catctgagga      1260
     tgttttggaa tttatacgtg aaaaattccc atccgaggat attgcagttg aacaatttcg      1320
     attttcatac gctcgtagga tatcgtcttt taaaatattt gctccgcctg atgtgtttaa      1380
     tgtgttactt tctgaaagnt tttggcttaa tgatgattta gtaattaaag aatttgttcc      1440
     aaataaaccg agaacaaata acaggccttc cactgtgcca aaaaactaaa aagtttattc      1500
     ttggcgtatc aaaatgttag gggactaaat atgaagctac acaagcttta tgccgactcc      1560
     tctgcattca ccgaagatat tttggctttt acggaaactt ggctaaaacc agagatatct      1620
     gactctgaag ttctgtcaaa taactttaat acttatagga ccgatcgccc ctcacgtagg      1680
     gggggggcgg tgtactgatt gccgttacct ctagcctaac atccgaaaga attctcactc      1740
     atatcccaaa cgaaattgaa tttgtaagtg tgaaagtttc cttgcaatct ttatctattt      1800
     ttgttacatg ttcctatatt ccacctggct ctgatctagt aatttatgag caccatctgt      1860
     ccgcaataaa atccgtacta tcccttcttt ctaacagaga ccttttgatt gttttgggtg      1920
     actttaatct acctgatatt tcttggtctc ctcccactga ctcacttgtc gctatacctt      1980
     tatccgccca tgattttgta gatggccttt tagaattatc gttacagcaa gtaagcttta      2040
     tacgaaattc tttaaataga caattagatc ttgtgtttgt ttcagacccg tccgaggtca      2100
     cggtatgtag aattgacgct cttgttgtac ctgaagaccg atatcatcca acaatggaat      2160
     tgacaatttg cctcccctgc tctgataccc tctctccttt agtgccccca actaaaatga      2220
     gatgttttcg taaatgtgac tataataaac ttaacgatat gatttctcat tataattgga      2280
     cagacttgta caattgtaca gacattgaaa gtgccactga actattctat atagcgttaa      2340
     atactttttt taatgaatgc gttcctgata ggtttccttt aaacctaaac aggcctcctt      2400
     ggtttaccaa tgcgcttcaa agacttaaaa accttaaatc aaatacttat aaaaagtata      2460
     aaaaatcggg taagccatca gatttttcga aatatgtagt ggctcgatcg gattttaatg      2520
     ttctcaacag tcattgctat tctatgtatc taaatcgatg taaatttgaa ttttcaaatg      2580
     atccgaaaca gtttttcaac tttgttaatg ccaagcgtaa gtcatcggca ttgccttcat      2640
     cggtacgtct aaactcaacg gaggcatcga cggattctga cattgctgat ttatttgctg      2700
     agtttttcca aaccacttat agttcgacag cttggtcaaa ttctaactac cctaatccct      2760
     taaatagggc aaattgtatt tttacccctt taattactga aaactctctc ttaatagatt      2820
     tagaaacaac aacgccgact tattctcccg gtccagatgg acttcctgga tgtgtgctca      2880
     agttttgtgc gtcaaccatt tgtaaaccga ttcttaaact ttttaatttg tctatttcat      2940
     catcagtttt tcctactatc tggaaggact cttttattat tccacttcat aaaaagggtg      3000
     cgaaggctga tgccaagaat tatagaggta tttccaaatt gtcggcaatt cctaaagcat      3060
     ttgaacgtat tatcacttct catttgcaac atttatgttc ctcgcttata tcaccgtgtc      3120
     agcatggttt tgttaagcga agatcgacca ccaccaacct tcttgaattg tcatctattg      3180
     taataaatgg atttcagaaa aaaatgcaga ctgacgttat atatacagat tttagtaagg      3240
     cctttgactc cgtcaaccac tctcttctct tattcaaatt agatctgctt gggtttcctg      3300
     gtaatctatt aacttggatt tcaagttact tgaatggtag gactcagagg gttatattca      3360
     agaattctgt ttcaaaattg atctacgtga catctggagt ccctcaggga agtcatctgg      3420
     gccctttgct gtttactttg tttatcaacg atcttccctc tatcataaca cattctcgtg      3480
     tactaatgta tgctgatgat gttaagcttt gtttatcata taatgatata gcgtcgggat      3540
     ttaacttaca gtcagatatt gattgttttc atgaatggtg tgagtacaac cttttaaagt      3600
     tgaactacct taaatgcaac gttatgactt tttatagggg tactcctacg tttattagtt      3660
     actttcttga aaatacgcca ctcgaccgta tatattcagt taacgattta ggtgttcttc      3720
     tggaccctaa acttaaattt gactgccaca taatgtccac tgttaacaaa gccatgagtg      3780
     ttcttggctt tataaagcgt tggtcaaaag aatttgatga cccttatacg accaaattat      3840
     tatttacctc ccttgtccgt cctattttgg aatattgttc gtcggtttgg agtccacaat      3900
     atcaagtgca cattgaccgt attgagtcgg tacaaaaaaa atttcttcta tttgcccttc      3960
     gtagtttgaa ctgggatcaa aacgtaaggc taccttccta ccagagtaga ttactgttgc      4020
     ttaatttacc tacacttgta aatcgtagaa caatgcttgg tactattttt atgcaaaatc      4080
     ttataagagg tgatattgat tctgcagaac ttgtaaaccg cctaactttc aatgttcctg      4140
     ttagactaac acgaaattat atccctctaa atttgccacg atgttcatca aatttttgtc      4200
     tgcacgagcc ctttcgcgtt ctatgtaata attataacaa cctttatcat ctaatttgca      4260
     tttcaacttc tatcccgtta ttaaaaacta atattttaac tcatttgctt ttctcttaat      4320
     tgtgcctttt attttcactt gtgtcttgtc tctatttaat ttatgtattt tcctcgcgaa      4380
     cagcattttt tgcccaaatt gaaatagggc gtaacaagca cgtgcttggt gtcgttgggc      4440
     cacttgtttg tactgctcgt agtgcatcaa cgtccatcag aat                        4483
//
ID   CR1-5_DSuz  repbase;    DNA;    INV; 4930 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   17-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4930
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 603-603 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 4930 BP; 1278 A; 1127 C; 956 G; 1551 T; 18 other;
     tcagtcgtca tctagctttc tttgcgttca gacgtgctta aaattctcgc tatgttactt        60
     ccccgctgtc ccgagtgcaa taccgatgtt acattggccc agcttcgcgc ttcggatgct       120
     gttcgctgtt cttctttgtg ccgtcgcgcc tatcatactt cttgcgtagc cctaccggac       180
     gatgtgctca aacttttatt aaatccaaac atactgtggc aatgtgatag ctgtgtggtt       240
     gcgaatgatt cgcattctaa aatttacgaa tttgatgaga aattgaaagc cctggagcgc       300
     ttatatcagg gccttcataa taaattcttg gaggcgttcc cccctaaaga tgatgcattg       360
     amtcagaatg taaatcccaa acctcgtcta ccgaggccta ccaacgtagc tgcagctccc       420
     cagtcatatg cggctgctgc tgccacgtct tcggcggtcg ttgacccttc taatcatgct       480
     ctggatattg agagaggaaa tttcatacag gttcgaaata agaagagaag gaacaacaac       540
     aagcccaata aacatgttgt tggagtggct cctaatgccg aagatcttca tgttttgccg       600
     accaagaaat ttttgcatgt cggaaagttc gcaactgata cagagccgaa tgctgtttta       660
     aaatatgtgt ccaccaagct taaggtggat gctagttctc tcactgttgt aaaacttgta       720
     aaaaaagatg ttgacgttam aaccttaaag tttgtaaatt tcaagcttgg tatccccgat       780
     cacctttacg attcagtctt caaaaacgat ttctggccga actcagttaa ggtcaaaaga       840
     tttattcata gagaacgggc cattgtggta ggggatggaa tcttatctaa tttgccggag       900
     cctggamaaa cttcaacatc aagtcatcca tcaaaaaacc cctagtgttc gacgccactg       960
     gcgtcgatac ttttgcggga catcttctgc aagcctttcc tcatttgtcg gagtcgcttt      1020
     cgcaacaaca tcggcagctg cttgcctttc tcactgcgcc ctcatcatct tctgtctctc      1080
     tcctaacgca ccatcaacaa catcagccgg agcttttgtt gtccgcttcg cgcgacattc      1140
     gctgtccgcc tggctctaat atcggcgcgc tcctcggagt tgcgctctca tcatcttgcg      1200
     cctctctccc gttgcaccat caacaacatc agctggagct tttgttgtcg ctttgcgcga      1260
     cattcgccgt ccgcctggtt ctaatatcgg mgcgctcctc ggasttgcgc tcwcatcatc      1320
     ctscgcckct ctcccgwtgc wccatcaaca acatcagctg gagcttttgt tgtccgcttt      1380
     gcgcgacatt cgccgtccgc ctggctctaa tatcggcgcg ctcctcggag ttgcgctctc      1440
     atcatcttgc gcctctctcc cgttgcacca tcaacaacat cagctggatt cttactcttc      1500
     attaggttgg aacccgctca ttgaaaatat gttctctaca tattcgccgc tggagttaaa      1560
     ccaacatcgg atgctgctat cttcggattc tgatactact aatgagctca gcgcgccttt      1620
     tgggatagcg ctctctttta tgagtagtcg gatacactct tcactgtgct cttcaccgcc      1680
     tctctctatt gatgcaattt cttctgcgct ctttggatgg ccgtcacaga acaggcatgc      1740
     gtccgtaaga aaatcattta catattccca attcgactgc actattattc cttggaacga      1800
     cgatctcaac ctgcctataa aaatacgtac ggatacgttg cgcaaggtac ttaatagtac      1860
     ttatgatcat gcgaggccga catctaattt ggatgttgag aattcctctt caacaatatg      1920
     cgctgactgg caacctgcta ggggcttgtc tgcagtaaac tcaaacagcc atcattcagg      1980
     aaataatggc ctgaaaatat actttcaaaa tatatccggc atgagaacta aaacgcagtc      2040
     tgtctttatg aatacttcca acagtgacta tgacattatc atactggttg aacttggcta      2100
     aattctaact ttagttcgaa tgaattcttc gatcctaaat tattccaagt ttttcgtaaa      2160
     gatagagact tcggcagaat gcagtgcgag agaggaggtg gtgtcatcgt ggctgttagc      2220
     cgtaaattct gttgcactgt aattcgactc cttaatgatg actcccttct ggaccaattg      2280
     gcggtgacgg tgtctggctc atccgggaag atatcgattg tggcttccta tgttccacct      2340
     ggcagtsatt ctgggcttta ccaggctcac ttagacaaca tctctaacat ccatgccagc      2400
     ttggaggact ctgatggcat atgtgtggca ggagacttca acctcagctc tgttttctgg      2460
     acgtgggacc cacaagcatc tgctatggtg cccggaaatg ttcatcattc acatgaaata      2520
     attgtcattg atgactgttt tagtatgggc cctcacccaa attaataatg ttttcaatga      2580
     tttgcataag ctkcttgatt taatcttcat taattctatt gttcactcta acgtaactct      2640
     ggctgaattt acgatttcaa attgtgttgt acatcacaaa cccttgtgcc taaacatcga      2700
     attttacagc tttctgccat tcaatgattc taatcctaga tatatatttg atccctctag      2760
     tttgagttcc ctaagggatt gcctgctatc cttaaattgg ggtgccttgc tatcgaaccc      2820
     ttgcatagaa actaattata waacctttct ttcaacgatt agaaatactc ttgacagcat      2880
     agtccgttcc aagatacggg gttcctacag gcttccttgg tatactaagg gactgcaaaa      2940
     aatcaaaaac cttagaaaca aatactacaa aaaattttct aaaacacata acctggccga      3000
     tggtgaaaga tataggcagc acaaacgkga gtttgagttt cttaataaat ttctatatag      3060
     ccaatacatt tgtgamgttg agcatagttt gaaggccaac cctaaggcgt tttggcgctt      3120
     tgttaactca aaaaaatcac attcgtctat accttcaaca atgtcgtatg gtgatgttgt      3180
     tgcttccact gaggccgata tcgccaattt gtttgctgcc tttttttcct cgaacatgga      3240
     accttccgat gattggtatg acctggaaac tttaaattca attgcagaaa tttgcaacat      3300
     tgggagcctg gacatatcgt atgatgacat ttctgaagca attagttatt ttgatgattc      3360
     cccaagacta gactttgatg gaatttcttc attcttcctt aagaattgta ttgccagtct      3420
     ttacctaccc ctgcaaattc tgttctcttc ttccgtgtct caaggaagat tcccattaga      3480
     tggaaaattt ctagagtcac gccggtccat aaaggaggaa gtaaatttga tatttctaac      3540
     tataggccaa ttgctaagat cagcaacata gctaaattgt tcgaaagaat aattttcaaa      3600
     aaattatctt tcttaataag gtcttacatc gaacctaatc aacatggctt catgcccggt      3660
     cgatctacga cgaccaactt ggctgtcttt accaatcact gtataaatgc atttgaggat      3720
     catttgcaga tggacacgat ttacacagat tttgccaaag cttttgacaa ggtttgtcac      3780
     tctgccctaa aggctaaact ttccaaactt ggctttcact cctcttttct taactggata      3840
     gcatcgtatt tggataaccg acgctatcat gttgaagtag gtggtgcatt atcccatcct      3900
     tataaagcga catctggact tcctcagggt agctcccttg gccctttact tttcattatt      3960
     tttataaatg acatttgtgc ctgtatccat ttttctagct tccttttata tgcggatgac      4020
     ctaaagattt ataggactgt cagtaacgta aatgattcga tattgcttca atctgaccta      4080
     gatagtatmg gcagttggtg ttccaagaat agtttgcctt taaaccttaa caaatgccac      4140
     atcgttcgtt atgcgaaacg ttctgtaact attccatcca cttatcacat caataaccac      4200
     cctctctctg ttttgaatga aatagttgat ctgggggtat tatttgatga caaatttctg      4260
     tttaatgagc acctgaattt tatattacca aaggcttatg caatgttcgg ctttgtkaag      4320
     mgaaacactt tattattcaa agatccgtat tccagattgt ctgtatactc tgcctttgtc      4380
     cgttctaggg ttgaatatgc ttcctttgtt tggaatccct cgggaagtgt ccagatcaat      4440
     aggattgaga ggttgcagaa aaagtttttg aagtttgcat tgcaatcctt gcattttact      4500
     gaaccggcac cgccctatga tagtcagtgt tccctgcttc acacttgttc cttgaaggat      4560
     cgccgtgcaa ctgctggcct tctctttctg aacgatctgc tagtaggaaa tattgattgt      4620
     ccttgcctgt tgggatgcat caattttaat gttcctgcca ggaatctccg taccatggtt      4680
     ccattcctgg accgtgctgt caggactaat tatgctcgca atgagccact actaagggct      4740
     cttagattgt ttaattcttt gccttctagc attagattca gctggggggc caataaagat      4800
     atgctaaggc aaacccttag ggaatatttt ttaagtaatt ttcaataata gatttaaggt      4860
     aatcgtatgt agccagataa ggattcatcc attggcgata agtaaataaa taaataaata      4920
     gataaataaa                                                             4930
//
ID   CR1-5_DT    repbase;    DNA;    INV; 4514 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4514
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1696-1696 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(539..1114,949..1572)
FT                 /product="CR1-5_DT_1p"
FT                 /translation="MTIICTAKKCEYNNIISGETFLICWLCDNCAHVKCAG
FT                 AGFNGRIGDLISKKVGFTWSCTACREMTDEMRTFMRQTRTGFMEVRKLLTS
FT                 MNDKFLAVESQFLGLKILSESPKRKIPNNLQLPANGLTTTMLSTPTGANNM
FT                 EHSPTILHRLFHLLILLHLDLQTTYQCSRTLHCLRHPLVTFHRYKTSPLLD
FT                 CSQHGTFSNYLTPSLPPAHTTPSGSSDNLPMQSHAALPAASPGNIPPVQNL
FT                 ATPGLQLVPGDSVSASCAVSSINDLPSPRRLGPGRSNIPLSGVPSRADQRK
FT                 SVGTPAVSGIPLSGVIQKSIFVSRLNPEATAEDVRIYLCEKLLAPDNAISV
FT                 YKFNFKHKRNISSFKILLADHLFPKALDSTIWPVNTLVHEYLQKDKTRGSS
FT                 XAASKN"
FT   CDS           join(1485..3326,3275..4402)
FT                 /product="CR1-5_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FYNLASEYVSSRVSPKGQDSGLQXSCFKKLDNLSILY
FT                 QNVRSLLGKLSRVYVNSLSTDADVIALXETWLNSSVSDQEIFADNFVVYRV
FT                 DRPTLGGGVLIAVHNSLSSELFAFXNXHSIEFIAVKISLNSXNIYITCSYI
FT                 PPKSDESLYLMHLSAIDLVSSATGDEDHFIVMGDFNLPNLLWVTSPDSNLL
FT                 FTESQHEFIDGLSDLSLGQINFVENNKDRLLDLIFVNNETLTILLRCSPFS
FT                 TPEDPYHPTLLLKVEINAETRSTSATRVKCFRRANFNSLSQHLGAIDWSSL
FT                 KSCYDLETAVSTFYEFLHSSINIFVPDVSVIDSSKPPWFNKHLSYLKNKKS
FT                 RLYKKYLKTNLSVDLAKYVSIRSEFTIAANQSYARYIAQCRENIRSDPKHF
FT                 YSFVNSKRKCNCYPSSLHYKSSSESSSLNISNLFAKFFQSTYSPQSYSSST
FT                 PYPYPLPHINNIYVPYFEVKDVLKALLSLEISFSPGPDKIPSCVLRNCAET
FT                 LSWPITFLFNQSLLLSEFPRIWSESFIIPLHKKGSRSDVENYRGIAKLSAI
FT                 PKLFEQLVTCQLQHMCTSIISPAQHGFVKHRSTTTNLLEFSCLIHRSFLKN
FT                 AKLMLFLRTSARHLIQKCQTDVIFTDFSKAFDSVNHSLLLHKLSLLGFPPI
FT                 LLNWILAYLSNRTQRVLFNNQLSSVVNVFSGVPQGSHLGPLLFVLFINDLP
FT                 NVISFATTLMYADDVKICLSYSDQISHHRLQSDLNELQSWCSINLLHLNHA
FT                 KCKSMSFYRTSAHIQPYYLGNCILERISKVNDLGVLFDSKLCFKSHISVTI
FT                 GKARGVLAFIKRWAKEFDDPYTTKTLYVSMVRPILEYCSSVWSPQYNEQQK
FT                 LIESVQKQFLLFALRQLNWDPNRHLPPYESRLKLIDLQSLKHRRMCGGVIF
FT                 FHKLLLGEVNSPRLLSYIDIAVPSRFTRTFRPIHLPICRSNFAVHEPFRVL
FT                 CSNYNLLYTEISLENSIECLSAKIYSFLESSNNLY"
XX
SQ   Sequence 4514 BP; 1216 A; 1087 C; 768 G; 1430 T; 13 other;
     aacacgagcc gtttggatam tttaaaamga cagtaacata ataacttgca aaacaaaact        60
     ggcaacagaa tatatttgct aatgctctgt tttgccagcg ttaccgctaa accaaaagtt       120
     tgtttttgtt gctatattgc tctctctgtg tttgccgcga acattcacac aatcgccctc       180
     tgttttgcca gcgtcaccgt taagcataat agtttgttgt tggtgaaact gctctctttg       240
     tgcttgccac gaacatttac acgcacttgc aatcactgca ctgcgcttcg atcggttctt       300
     cagcgctaac ttcgtctctc tggagtgctg ctgccttgct tttcggcgct tacatccaac       360
     tgctctctgc ccagctgctg ctctgctctt cgacgcttac gctttccact ctgctgctgc       420
     tctgcccttc gacgcttaca tcggactgct ctttgccctg ctgccgctct gccctgccgc       480
     tattgccgct tatacaccca cgcttgtctg ctgcacagtg acctgatact cagccaaaat       540
     gactatcatt tgcactgcta aaaaatgcga gtataataac atcatcagcg gagaaacttt       600
     ccttatatgc tggctgtgcg acaactgcgc gcacgttaag tgcgccggag ccggtttcaa       660
     tggccgtatt ggggatttaa tctccaaaaa agtcggcttc acctggtctt gcacggcatg       720
     ccgtgagatg actgatgaaa tgcgcacctt catgaggcaa actaggaccg gatttatgga       780
     ggttcgaaaa ctcctcacct ctatgaacga caaattcctg gcagtggaat cccagttcct       840
     cggtcttaag attctaagtg aatcaccgaa aaggaagatt ccaaataatc ttcaacttcc       900
     tgcaaacggg ctgacaacca cgatgctttc tactcctact ggcgctaaca acatggaaca       960
     ttctccaact atcttacacc gtctcttcca cctgctcata ctactccatc tggatcttca      1020
     gacaacttac caatgcagtc gcacgctgca ttgcctgcgg catcccctgg taacattcca      1080
     ccggtacaaa acctcgccac tcctggattg cagctagttc ctggcgattc agtctctgca      1140
     tcatgtgcag tttcttctat aaatgatctg cctagcccaa gacggctggg tccaggtcgt      1200
     tctaacatcc ctttgagtgg tgttccaagt cgagcagacc agagaaaaag cgtggggact      1260
     cctgcggtct cgggcatccc tctaagtggg gtcattcaaa aatccatatt tgtatccaga      1320
     ctcaacccag aagctactgc tgaggatgtg agaatctacc tttgcgaaaa acttcttgct      1380
     ccagataacg ctatttctgt ctataaattt aattttaagc ataagcgtaa catatcttca      1440
     tttaaaattc ttcttgcaga ccatttgttc cctaaagcac ttgattctac aatttggcca      1500
     gtgaatacgt tagttcacga gtatctccaa aaggacaaga ctcggggctc cagtwcagct      1560
     gcttcaaaaa actagataac ttgtcaatwc tctaccaaaa tgtgcgaagt ctactgggaa      1620
     aactgagtag ggtgtatgtt aacagtcttt ccaccgatgc mgacgtaata gctttawctg      1680
     aaacttggct taactcttcc gtctctgatc aagaaatatt tgctgataac tttgttgttt      1740
     atagagttga tcgccccacc ctmggtggag gcgttttaat tgcagttcac aattcactgt      1800
     cttcwgagct ttttgctttt sagaatkwtc attccattga atttatagca gtcaaaatat      1860
     ctttaaatag tastaacatt tacataactt gctcttatat tccacctaaa tcggatgaat      1920
     ctctgtactt aatgcacctt tctgcaattg acttagtttc atctgcaact ggtgatgaag      1980
     atcatttcat tgtaatgggt gactttaact tgcctaacct gctttgggtg acttcaccgg      2040
     actccaatct tctttttact gagagtcaac atgagtttat cgacggccta tctgatttgt      2100
     ctttgggtca gattaacttt gtggagaaca ataaagacag gctcctagac ttaatctttg      2160
     ttaataacga gaccctcaca attttgctca gatgctcacc cttctccaca ccagaagatc      2220
     cctaccaccc aaccttgttg ttgaaagttg agattaacgc agaaactcgt agtacatcgg      2280
     ccacacgagt caaatgtttc cgcagagcca atttcaacag tttgagccaa catttgggtg      2340
     ccatcgattg gtcatcatta aaatcatgtt atgatctaga gaccgcagtg tcaacgtttt      2400
     atgagttctt gcattcgtct atcaacattt tcgtaccaga tgtatctgta attgactcat      2460
     ccaagcctcc atggtttaat aagcacttat cctacctcaa aaacaaaaaa tccaggctat      2520
     acaaaaaata tttaaaaacc aacctctcag tagacctggc gaagtacgtc tcgatccgct      2580
     ctgaatttac tattgctgct aatcagagtt acgctcgcta cattgctcaa tgtagagaaa      2640
     acattcgctc ggatccaaaa cacttttatt cctttgtgaa ctctaaaaga aagtgtaact      2700
     gttatccctc atctcttcat tataaaagct cttctgaatc ctcatcatta aacatatcta      2760
     atctttttgc caaatttttc cagtcaacct actctccaca gtcctatagc tcctcgactc      2820
     cttatccwta ccctctaccc cacattaata atatctatgt tccatacttt gaagtcaaag      2880
     acgttctgaa agcccttttg tctcttgaga tatcgttttc tccgggtcct gataagatac      2940
     caagctgcgt ccttagaaac tgtgccgaaa ctttgtcctg gccaatcact tttttattca      3000
     accaatctct gcttctttct gaattcccga gaatttggag tgaatctttc atcattcctc      3060
     tgcataaaaa aggctcaaga tccgatgttg aaaactatcg cggtattgcc aaactctctg      3120
     ctatacctaa gcttttcgaa cagttggtca cctgccaact tcaacatatg tgtacctcca      3180
     taatctctcc agctcagcat ggttttgtta agcatcggtc aactactaca aatctcctcg      3240
     aattctcttg tctcattcat cgaagtttcc ttaaaaatgc caaactgatg ttatttttac      3300
     ggacttcagc aaggcatttg attcagtaaa ccatagcctt ctccttcaca aactgtctct      3360
     tcttggattt ccaccaattt tactaaactg gattttggca tatctctcaa atagaactca      3420
     acgcgttctc tttaataatc aattgtcttc tgttgtaaat gttttttctg gtgtccccca      3480
     aggcagtcac ttaggtccac tactgttcgt actctttata aacgatcttc caaacgtcat      3540
     atctttcgcc actactttaa tgtatgctga tgacgtaaaa atttgcctat catactccga      3600
     ccaaatctct caccaccgcc tacaatcgga tctaaatgaa ttacagtctt ggtgctccat      3660
     taacttgtta caccttaacc atgcaaaatg caagtcgatg tctttttatc gaacttcagc      3720
     tcatattcaa ccttactatc tcgggaattg tattttggaa cgtatttcca aagtaaatga      3780
     tctaggtgtt ttattcgaca gcaaattatg tttcaaaagc cacatctccg ttactattgg      3840
     taaagctagg ggggttttag ccttcataaa acgttgggcc aaggagtttg acgatccata      3900
     cacaacaaaa actttgtatg tttccatggt tcgccctatt ttggaatatt gctcgagtgt      3960
     atggagccct caatataatg aacaacaaaa actaattgag tcagttcaaa agcagtttct      4020
     attattcgct ttgcgtcagc tgaactggga tccgaataga cacttgccac cctatgaatc      4080
     gagattaaaa ttaattgatt tacaatctct aaaacatcgc agaatgtgcg gtggagtaat      4140
     tttttttcat aaactgcttt tgggtgaggt aaattccccg cgtctcctga gctacattga      4200
     catcgctgtc ccttcgagat tcactcgaac ttttcgccca attcacctgc caatttgtag      4260
     gtcaaacttt gcagttcatg agccctttag ggttctttgt tcaaattata atttattgta      4320
     tactgaaata tcattggaaa actcgattga atgtttatca gctaaaattt actcctttct      4380
     tgagtcttcg aataatctgt actaataacc ctgctttgtt aaactcttat ttaagttata      4440
     tttatttaag taaatagtta tgttaatata agttagcaga ttcattgtta actataaacc      4500
     cccaataaat aaat                                                        4514
//
ID   CR1-5_Hmel  repbase;    DNA;    INV; 1693 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1693
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           559..1380
FT                 /product="CR1-5_Hmel_1p"
FT                 /translation="KINDINDSLLMQQDLDNLVVWCNENQLKLNYQKCFAI
FT                 TFSRKVHNFNFNYNLNGETLNKTKQIRDLGITIDNKLSFVPHIDNLLKTTL
FT                 KTVGFIIRNSKEFKKSKTKLILFNSMVRSKLEYCSTVWNPFYQIHTDRIER
FT                 VQKKFLKYLNYKDNGINKNKRYKDILKFYKTLSLSSRRVMLDICFLHKLIN
FT                 GEVDCNKLLEKIMLAIPRQNARVRTKKKYTFLSRKVRSNLGTNAPINRAMK
FT                 NYNEIFNMANIDIFRDSGTLFKKKIKKYFLQCD"
XX
SQ   Sequence 1693 BP; 633 A; 207 C; 258 G; 586 T; 9 other;
     aatatggaag aaagcacggg ttgtacccat atttaaaagc aacgacaaaa aggaaatatc        60
     aaactataga ccaatatgca tattatctat ttttggcaag attttagaat ctttcatctg       120
     tcaagcactt aattggcata tgaaatctat atttactgaa gatcagtatg gttttattag       180
     caaaaggtct accacgtcaa atttggtttt attcgtagat aatttgtcag aaaccgtcga       240
     taaaggtagc caagtagact gtatatacac agattttgct aaagcgttcg atgtcgtcag       300
     tcattcaatt cttatagata aacttgagaa ttatggtatt tatggaaatc tactggactg       360
     gtttagatca tacttgatca acagagaaat gaacgtagtt attgcaggat ataaatccca       420
     tacgtttgtt gcaacatcag gagtacccca gggctctcat ctgggaccag ttttatttgg       480
     aattttcatt aatgacatag taaaaaattt taaaaattgt tgttttaatt tgtatgctga       540
     tgatctcaag ttttataaaa aattaatgat ataaatgact cattgttaat gcagcaagac       600
     ctggacaatt tagttgtttg gtgtaatgaa aatcaattaa aattgaacta tcagaagtgt       660
     tttgctatta cgttcagtag aaaggtacat aactttaatt ttaattataa cttaaatgga       720
     gagacactga ataagacaaa acaaatcaga gacttgggca tcacaattga taataagtta       780
     agctttgtac ctcatattga taatttgtta aaaacaacat taaagactgt aggatttatc       840
     ataaggaaca gtaaagaatt taaaaaatca aagactaaac taatattatt taattcaatg       900
     gtgagaagta agctagaata ttgttccact gtttggaatc ctttctatca aatacatact       960
     gacaggatag agagagtaca aaagaaattt ttaaaatatt taaattataa ggataatggg      1020
     ataaacaaaa ataaaaggta caaagatatt ttaaaatttt ataaaacgct ttccctatcc      1080
     agccgtagag tcatgctcga tatttgtttt ttgcacaaac ttataaatgg agaagtggac      1140
     tgcaataaac tgcttgaaaa aattatgctt gctataccaa gacaaaatgc aagagtacga      1200
     acaaagaaaa aatacacttt tctaagtaga aaagtaagat ctaacctggg tacaaatgcc      1260
     cctataaacc gagctatgaa aaactataac gaaattttta acatggcaaa tattgatatt      1320
     tttagagact caggtacatt atttaaaaaa aaaattaaaa aatatttttt acaatgtgat      1380
     tagagaactg ttttttaaca ttattattta ttttttgttt actcttatta tatatttttt      1440
     aactaatgta atatctatat acatadtttt tatttataaa ttttagtart ayrsttgtaa      1500
     aatcattttt aattgttttt aaattagatg tagaatatta ggttttagaa tacctgcttt      1560
     tagttataat catgttgagc tagcctgtaa gtgtgatgta caatgtaaaa catttttaaa      1620
     cctttgtact ttgtttttta awkrwttgta tcttttgtat gttacgttgg cttgcctaat      1680
     aaataaataa aat                                                         1693
//
ID   CR1-5_HMM   repbase;    DNA;    INV; 3626 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3626
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2782-2782 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..373
FT                 /product="CR1-5_HMM_1p"
FT                 /translation="QHARLNNIEVQCVPENRQESIIEIVTKLGSAVGCXIT
FT                 EDTIAACSRVAKSNRSSNRPRSIVVQLTSQKIRDRLLAACIKYNKSHPTDK
FT                 LNTSHIDIKGHKQAIYVVEHLSPTNKALHAAARVKL"
FT   CDS           join(506..1699,1618..3384)
FT                 /product="CR1-5_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="VICVKFSSITIYYQNVRGLRTKTKDFYCNLLCVNADI
FT                 IVLTETWLNETVCSNMLFGNNYNVFRRDRMIDSNSKKKDGGGVLIAVKKHI
FT                 SSKNMIEWQGNCEDLWVVINTPINNKLCHMVLXVVYLPPPVNKALLETFLA
FT                 NYNRVSEIHNLYTCLVGDFNLNNINWSTSNTHYIQPISSICQSLVDFCAMN
FT                 NLRQCNNVMNCSNKILDLVLTDIPNCNVTESIDVLCKSDPLHPPIEFKVNT
FT                 ETSDRLTINTNLKRLNFYKADYGSINKYLADIDWHTEFYKCECIDEMVLTF
FT                 YNILKKSIDMFVPLSKNKCNKFPVWLPKKFIRRLNEKIKIKERYKIYNNPM
FT                 DELTLRLLSRRCXKLASESFQTYIQNTEQSIKKILNTFSILSKILKNIRVH
FT                 IQLLTKYKKNPKYFFNFVKNSQKHQSTYPATLSNGKVTASNGEDSCNLFAQ
FT                 YFASVCNSPSGSNDINAIRNVYSVQKNNTPLSYVEICEKHILDKLKTLDIS
FT                 KGAGSDNIPSIFIVECASNLSLPLYYLYNESLRSGVFPVKWKEAKVVPVHK
FT                 QEDETMVKNYRPISILSHFAKVFEDLICPIINSHFKPSLIDQQHGFVKGRS
FT                 TITNLVTFTDSVIQAIDERLQIDAIYTDLSKAFDRVPHDILLKKLAAYGFM
FT                 GPLIKWFSSYLKHRSFYVVLNGYKSNIQVCLSGVPQGSHLGPTLFNIFIND
FT                 IIVCFQNSSPYIFADDVKFIRAVGTLEDSSLLQEDIDRLVEWCNDNGMSVN
FT                 AAKCRHIKFTRNARSVPSFYSIKEIILEEVTTLKDLGVVLDSKLTFLPHIE
FT                 QTIKKASKKLWFVIRMSKIFLKPNTKIILYNSLIKSILEYGSVVWRPHYAT
FT                 HILRLERLQKRFLWNLSFSTGNVKKLTSYSERLKYFKMISLDNRRTLLDIR
FT                 FIYKILNNYIDCPQLLSSFNFKVPRCYPRSKIAPLXIPFRRTVLGSNSAIP
FT                 RLSKLLNDYSMVTDVFYDSINKFHNNILKNLK"
XX
SQ   Sequence 3626 BP; 1280 A; 551 C; 586 G; 1204 T; 5 other;
     acagcatgca cgtttaaata atattgaagt acaatgtgtc ccagaaaacc gacaagaaag        60
     cattatagag atagtcacta aattaggtag tgcagtgggt tgtwatatta cggaagatac       120
     aatagcagca tgtagccggg ttgcaaagtc taatcgatcc agcaaccgcc cccgttctat       180
     agttgttcag ttgacatctc aaaaaattag agaccgctta ttggcagctt gtataaaata       240
     taataaatcg catcccacgg ataaactgaa tacatctcat attgatatca aaggacataa       300
     acaagctatt tatgtagttg aacatctgtc acccacaaat aaggcattac atgctgctgc       360
     aagggtaaaa ttataaatat gtatgggtca gaagcggaaa aatttatatg agaaaagatg       420
     atagctcaga gtttaaagta ataaaaagtt ttgattattt agaaaaaata aattagaatt       480
     aattgtgtta gtktaattca aataggtaat ttgcgtaaaa ttctcgtcaa taacaatcta       540
     ttatcaaaat gttcgtggtt tacgaacaaa aacaaaagat ttttattgta atttattgtg       600
     tgtgaacgct gatataattg tgcttacgga aacctggtta aatgaaactg tttgtagtaa       660
     tatgttgttt gggaataatt ataatgtttt taggagagat cggatgattg atagtaattc       720
     taaaaagaaa gacggaggtg gtgtcttgat tgctgtaaaa aaacatattt cttctaaaaa       780
     tatgattgaa tggcaaggca attgcgaaga tttgtgggtt gttataaata cacctataaa       840
     taataaactt tgtcatatgg ttttatstgt agtatattta ccaccaccag taaataaagc       900
     gttactcgag acttttttgg ctaattataa tagagtatct gaaatccata atctttacac       960
     ttgccttgtt ggagatttta atctcaataa cataaactgg agtacatcta acactcacta      1020
     cattcaaccg atctcttcaa tttgccaatc tttagtggac ttctgtgcaa tgaataactt      1080
     acgacagtgt aacaatgtaa tgaattgctc aaataaaatt cttgatcttg tgttaactga      1140
     tataccaaac tgtaatgtga cagaatcaat tgacgtttta tgtaagagtg atccattgca      1200
     cccaccaatt gaatttaaag taaacacaga aacatcagat agactaacaa ttaatacaaa      1260
     tctcaaacga ttaaattttt ataaggctga ctatggttct ataaataaat atttagcgga      1320
     tatagattgg catacggaat tttataaatg tgaatgtatt gacgaaatgg tgttaacatt      1380
     ttacaacata ctaaaaaaat ctattgacat gtttgtacct ttatctaaga ataaatgcaa      1440
     taaattcccg gtttggcttc ctaaaaaatt tattagacgt ctaaatgaaa aaataaaaat      1500
     aaaagaacga tataaaatat ataataatcc tatggatgaa ctaactctga gattgcttag      1560
     cagacgttgc cwgaaattag cttctgaatc atttcagacg tacattcaaa acactgaaca      1620
     aagtataaaa aaaatcctaa atactttttc aattttgtca aaaattctca aaaacatcag      1680
     agtacatatc cagctacttt aagtaacggc aaagtaactg ctagcaacgg ggaagattct      1740
     tgtaatctct ttgctcaata ttttgcatct gtttgtaatt ctccttcagg ttccaacgat      1800
     attaatgcaa ttagaaatgt ttattctgtt caaaaaaata ataccccatt atcttatgta      1860
     gaaatttgcg aaaaacatat acttgataag ctcaaaacac ttgatatttc taaaggagct      1920
     ggatcggata atattccttc tatatttatt gttgagtgcg cgagtaatct ttcattgcca      1980
     ctttattact tatataatga gtcgcttagg tctggagtat ttcctgtgaa gtggaaagaa      2040
     gctaaagtcg ttcctgtgca taagcaggaa gatgaaacta tggtcaaaaa ttatcgaccg      2100
     atatcaatac tgtcgcactt tgcgaaggta tttgaggatc ttatctgtcc tattatcaat      2160
     tcccacttta aaccttcctt gatagatcaa caacacggat ttgtaaaagg tagatcaact      2220
     atcacaaatc ttgttacttt caccgattct gtaattcaag cgattgatga gcgattacaa      2280
     atagatgcaa tttatactga tttgagcaag gcattcgatc gtgtgccgca tgatatttta      2340
     ttaaaaaaac tggccgccta tggttttatg ggtccattaa taaagtggtt ttcatcatac      2400
     ttaaaacatc gttcttttta tgttgtatta aacggatata aatcaaatat tcaagtatgc      2460
     ttatcaggag tacctcaagg ttcccatttg ggtcctactc ttttcaatat tttcataaac      2520
     gatattatag tgtgttttca gaactcaagt ccgtatatat ttgctgatga tgttaaattt      2580
     attagagccg taggaacatt ggaggactca agtttacttc aagaggatat tgaccgccta      2640
     gttgaatggt gcaatgataa tggcatgagc gtaaatgcag ctaaatgtag acacataaaa      2700
     ttcacacgta atgcacgatc tgttccttca ttttactcca ttaaagaaat tatacttgaa      2760
     gaggtcacaa cattaaagga cttaggcgta gtcttagatt caaaactaac tttcttgcca      2820
     catattgaac agacgataaa aaaagcatcc aaaaagttat ggtttgtaat acgcatgtca      2880
     aaaatttttc tcaaaccaaa cactaaaatt attttatata atagtctcat aaaaagtatt      2940
     ttagaatatg gcagtgtagt gtggcgacca cattatgcta cacatatttt gagactggaa      3000
     cgtcttcaaa agcgtttttt gtggaatctg tcattttcta caggaaacgt taaaaagtta      3060
     acttcgtaca gcgagaggtt aaaatatttt aaaatgatat cactggacaa tcgtagaact      3120
     ttattagata ttcgctttat ttataaaata ttaaataatt atatcgactg tcctcaattg      3180
     ttaagtagct ttaatttcaa agtccctcgt tgctatccta ggtctaagat tgcaccacta      3240
     kctatcccat ttcgtcgcac tgtactcggt tcaaattcag caattcctcg tttgagcaaa      3300
     cttctaaacg actatagtat ggttacggat gtattttatg attcgataaa taaatttcac      3360
     aataatatct tgaaaaatct caaataattt tcattaacta gtaggtagca cttaaactac      3420
     agcatacaag ttgattagaa tttgttttta taaacattag atttaagtaa aacaattatg      3480
     tgattgcatg ctgtgtttac ctttatatag ttgtacaatt aagttttttt ttttttttgt      3540
     attgcatgtg ttagtattat aagtatcatt gtaacaactg ctggtgaacc ttttacaaat      3600
     aaaataaaaa ttaaataaaa taaaat                                           3626
//
ID   CR1-5_NVi   repbase;    DNA;    INV; 5946 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-5_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5946
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 752-752 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           277..1509
FT                 /product="CR1-5_NVi_1p"
FT                 /translation="MLSDVAKKTIALIKMKTSEEIREQLLKELHNKTAEKH
FT                 NTTIMDEENEMENLVAENTLLKQLVAELQDKNQLQKEIIEMQKQKSTESQT
FT                 NIKSYAEVIRDIKPKPKRVPSIMIKANDPNQTNTMELLTKCLVTEKNVQTK
FT                 YIRKKNESEIEVSCMNSKSLETLENVLTSKLKNCQVKVEQQGNPKIKIVGI
FT                 DNATNMDELDIESDINTRNFKNFNSSCKVLHMYTNKRNKTSTVLMECSPDI
FT                 YKSIRENNNKVFVGHQCCKAYDLINITPCYNCGRYGHSASKCRNDPACIKC
FT                 SDKHNVSVCNNNKIECVNCIFNNNKFKTSLPTDRLKCSILKKKIKKYINSI
FT                 DYPIAPVLPAWDETSAIKQIHTIQTNRLLYQRSVAPGKNVGKFQRATQLQG
FT                 TSQQNYPANTAAEDIQ*"
FT   CDS           join(1509..3161,3101..4384,4374..5300)
FT                 /product="CR1-5_NVi_2p"
FT                 /translation="MEAQINLIEEIQNSLNEQERIYRDVETFNKDRSSNND
FT                 LILYLNIRSLNANFEKLQILLKSLKIKPYVIVCTEVWKLTHYQYYRIKDYK
FT                 LYYNHGDINKNDGVVVYVNENVKHTNDTIVIGKLKILNTIISLNNKKQLEI
FT                 SSLYRSHGLSCIEFNQNLKIYLDQKKNVKNHIIIGDFNINIQDYNHISVEF
FT                 LNNLLENGFLPGFTNTTRPTNITTNEGTCIDNIFIKTDFLNTKSLTLMTPI
FT                 TDHYPLFLELKNRTLKQDNKQLEGDFYRYNYKKLNNTAKQINWTKFKNTKD
FT                 PNENINEIIKEIQYCMEKSKYKKPNLHNSKKTPRKDWITKAIVKSCITKET
FT                 LYNKLKQHPDNEELKENYKQFVKTLDKVIKAAKIDHEKKTIEKNSDDPRKL
FT                 WACINSKIGKNKNKTETTISQLKTEDNTIITNRIEIANKMNEYYCKLGETL
FT                 SNKIITPSNKKLELPKSNPKTIYIKPTNESEIIKIIDNMKLKSGGIDKISA
FT                 RILKTIAAIIADPLAHVINQCIEMAIWPDMLKAAEVIPIYKAGKKMKWVTI
FT                 DRYHSNTNIQSWEKNEMGNYRPISLISNIAKIFEKVIHRRIIDFVSQSKIL
FT                 SKNQYGFMKNIGTKDALNMISKTIYENLDQSTPIAITFLDLAKAFDTVNHK
FT                 ILLDKLYAYGMRGKGHQLITSYLNNRKQKVKIGSHTSDFENVNTGVPQGTI
FT                 LGPLLFILYVNDLLMNMPENSIISYADDTAVIANGKTWSEVEVKMNKHLED
FT                 ISTWLRLNKLTLNIQKTVYITFGNYCDSVPKKIEFKINHEILKRVNETKYL
FT                 GLIFDSNMRWDKHIQYLINKTRYLIFIFSKISKFMDTSTLRIIYYAFFHSL
FT                 INYGIVAWGGAYQNNLQLLQTVQKRILKIINKNTFQRANPLNLQQLFAYES
FT                 LRYHYTNFKDQFINSTSRTRNKLIILPRYNKTVSTKNSYIKAINIYNKLPN
FT                 DLKIIDMRRKTNIRKIQDWLRINEELMSEKTNTTTIDCQQLKIWLSEIGNQ
FT                 DQCERRCVISSKIQDLIQQRKEMNNNRQGTAENSVYLDIRTYICAKGKCNS
FT                 YNIRKHRRISTYNYNKINNTYPNIIDSLDDITNDIINTWMLKTKNNKANIK
FT                 FIKFIKGTCNDLENIKNPNIEKYKPIETVFSMIDGMAAENSNKARNREATA
FT                 APGQKITESASHRMTYGDINYLGSNKAFFYFDRGIRGKQVFTNSVSSLKLQ
FT                 SPYKDIVIIDEIIFTSDCKCDSSNQHKEMFPHYRVTCAVGLTCPARLNSTE
FT                 KMSYIREKNATTDRFMTARQMLVRNW*"
XX
SQ   Sequence 5946 BP; 2530 A; 957 C; 941 G; 1518 T; 0 other;
     aaatgaaatt taatcatgtt atttttgttt aaataacaac atataatact gtcaatatgg        60
     cgccaattgt gaaaacacct ccggataagc cggatcgcag tttttacaag tgtcatccaa       120
     gtaaaatagt gaaaacagtg atttgtataa tttgtgagaa ctgcatatca taaaagtgat       180
     ttcgagaaga ctaaaaatcc cgtgtacgtt ggtgaacatt tgattatatg ccaagatcat       240
     gtcctaggag acctaaccac taataccgaa caacatatgc taagtgatgt ggcaaagaaa       300
     accattgcgc ttataaaaat gaaaacatca gaagaaatca gggaacaact actaaaagaa       360
     ttacacaata aaacagctga aaaacataat acaacaatta tggacgagga aaatgaaatg       420
     gagaatcttg tggcagaaaa caccctattg aaacaactag tagcagaact gcaagacaaa       480
     aatcagcttc agaaagaaat aattgaaatg caaaaacaaa aaagcacaga gtcacagaca       540
     aatataaaat catatgcaga ggttataaga gacataaagc cgaaaccaaa gcgagtccca       600
     agtataatga ttaaggccaa tgaccccaat cagacaaaca caatggaact gctcacgaag       660
     tgtctagtta cagagaagaa cgtgcaaact aagtatatac gtaaaaagaa tgaaagcgaa       720
     atagaagtca gctgtatgaa ttcaaaaagt ctagaaacac tcgagaacgt gttaacaagt       780
     aaacttaaaa attgtcaagt caaggtagaa caacaaggta atccaaaaat aaaaattgtt       840
     ggtatagaca acgctacaaa catggatgaa ctggacattg aaagtgatat taatacacgc       900
     aactttaaaa actttaacag ctcatgtaag gtactgcaca tgtacaccaa taaaaggaac       960
     aaaaccagca cagtactaat ggaatgctca ccagatatat acaagtcaat acgtgaaaac      1020
     aacaataagg tttttgtagg acatcagtgc tgtaaagcct atgatctgat aaacattacc      1080
     ccttgctaca actgtggaag atacggacat agtgcatcaa agtgtaggaa tgatcctgca      1140
     tgtataaagt gctctgataa acacaatgtg agtgtatgca ataacaataa aattgagtgt      1200
     gtaaactgta tatttaacaa taataaattc aaaacaagtc taccaacaga cagactgaag      1260
     tgttctatac ttaaaaagaa gataaaaaaa tatattaact ctattgatta cccaatcgca      1320
     cctgtattac cggcttggga tgaaacaagt gcaattaaac aaatacacac aatacaaact      1380
     aacaggctac tataccagag gtcagtagca ccaggaaaga acgtgggaaa attccaaaga      1440
     gctacgcaac tccaaggcac cagtcagcag aattatccag caaacacagc agctgaagat      1500
     attcaataat ggaagcacaa ataaatttga ttgaagaaat acaaaatagt ctaaatgaac      1560
     aagagcggat ttacagggat gtcgagactt ttaataagga tagaagtagt aataatgatc      1620
     ttatcctgta cttaaacatc agaagcctaa atgccaattt cgaaaagtta caaatccttc      1680
     ttaaaagtct aaaaataaaa ccatatgtta ttgtatgcac agaggtatgg aaattaacac      1740
     actatcagta ttatagaata aaagactaca aattatatta caatcacggc gacatcaata      1800
     aaaatgatgg tgttgtggtt tatgtaaatg agaatgttaa acatactaat gatacgattg      1860
     taataggtaa gcttaaaata ctaaacacaa ttatctccct taataataaa aaacaactag      1920
     agatctcatc gttatacaga tcacacggac taagttgtat agaatttaat cagaatctca      1980
     aaatctattt agatcagaaa aaaaatgtaa aaaaccatat tataattggt gattttaaca      2040
     taaatataca ggattacaat catataagtg tagagttcct aaacaacctt ctagaaaatg      2100
     gttttctacc aggatttaca aacaccacca gaccaacaaa cataactaca aatgaaggaa      2160
     cgtgtattga taatatcttt attaaaactg acttcctgaa tacaaaatcg ctaacactta      2220
     tgacgcctat tactgatcat tatccactat tcttggaatt aaaaaatcga acactaaaac      2280
     aagataacaa acagttagaa ggagactttt atcgttacaa ttacaaaaaa cttaataaca      2340
     ctgctaagca aataaattgg acaaaattta agaatacaaa agatccaaac gaaaatataa      2400
     acgaaataat aaaagaaata caatattgca tggaaaaatc gaaatacaaa aaaccaaacc      2460
     tgcataattc caaaaaaact cccaggaaag actggataac aaaagcgata gtaaaatcct      2520
     gtattacgaa agaaacatta tataacaaac taaaacaaca tccggataat gaagaactaa      2580
     aggaaaatta taaacaattc gttaaaactc tagataaagt tataaaggca gcgaaaattg      2640
     atcatgaaaa gaaaacaatc gagaaaaata gtgatgatcc cagaaaactc tgggcctgca      2700
     ttaatagcaa aataggcaaa aataaaaata aaactgagac tactattagt caactaaaaa      2760
     ctgaagacaa tacaataatc acaaatagaa tagaaattgc aaataaaatg aacgaatatt      2820
     attgcaaact tggcgaaaca ttgagtaata aaataattac accaagtaat aaaaaactag      2880
     aattacctaa aagcaatcca aaaacaatct acattaaacc aaccaacgaa tcagaaatta      2940
     taaaaattat agacaacatg aaactaaaaa gcggaggtat agataaaata agtgcaagga      3000
     tactcaaaac tattgctgct attattgcag accccctggc ccacgttata aatcaatgta      3060
     ttgaaatggc aatttggcca gatatgctga aggcggctga agtaatacca atatacaaag      3120
     ctgggaaaaa aatgaaatgg gtaactatag accgatatca ctaatatcaa atattgctaa      3180
     aatctttgaa aaagttatac acaggagaat tatagacttc gtaagtcaaa gtaagatatt      3240
     aagtaaaaat caatatggat ttatgaaaaa cattggaacc aaagatgctt tgaacatgat      3300
     ctctaaaaca atatacgaaa acctagatca gagtacaccg atagctatta cattcctaga      3360
     cctggcaaag gcatttgaca ctgtaaatca taaaatacta ttagacaagc tttacgcata      3420
     cggtatgaga ggtaagggtc atcaacttat tacgagttac ttaaacaata ggaaacaaaa      3480
     agtaaaaata ggttcacata caagtgattt cgaaaacgta aatactggtg tcccacaagg      3540
     gacgatactt ggcccattgc ttttcatact ttacgtaaat gacttactga tgaatatgcc      3600
     agaaaactct ataatatcct atgcagatga cacggcagtg atagctaatg gaaaaacctg      3660
     gtctgaagtt gaagtaaaaa tgaacaaaca ccttgaagat atctctacat ggctcaggct      3720
     aaataaacta acattaaata ttcaaaaaac agtatatatc acttttggaa actattgcga      3780
     tagcgtgcca aagaaaattg aatttaaaat aaatcacgaa atactaaaga gagtaaatga      3840
     aacgaaatac ctaggcctaa tatttgattc taatatgaga tgggataaac atattcaata      3900
     tctcataaat aagactagat acctcatttt tattttcagt aaaatttcca aattcatgga      3960
     tacatctact ctaagaataa tttactacgc atttttccac agtctgatta actatggaat      4020
     agttgcgtgg ggtggtgcgt accaaaataa cttgcaactg ttacaaacgg tccaaaaaag      4080
     aatcctgaaa attataaata aaaatacctt ccaaagagct aatccactta acctacagca      4140
     attattcgca tacgaaagtc tacgctatca ttatactaac tttaaagatc agtttattaa      4200
     ttcaacaagc agaacaagaa ataaactaat aatcctacca aggtataaca aaactgtaag      4260
     cacaaaaaat agttacatca aagctattaa catctataat aaactaccga atgatctcaa      4320
     aatcatagac atgcggagaa aaacaaacat cagaaaaata caagactggt taagaattaa      4380
     tgagtgaaaa aacaaatacc acgacaatag actgccagca actgaaaata tggctctctg      4440
     agataggcaa ccaagatcaa tgtgagcgta gatgtgtaat atcctcaaaa atacaggatt      4500
     taatacagca aagaaaagaa atgaataata atcgacaagg aactgcagaa aactctgtat      4560
     atttagatat tagaacctac atttgcgcaa aaggcaaatg taattcatac aatatacgca      4620
     aacatcgtcg tatctccacc tacaattaca acaaaattaa taatacatat ccaaatatta      4680
     ttgatagttt agacgatata acaaacgata ttataaatac ctggatgctc aaaacaaaaa      4740
     acaataaggc taatatcaaa ttcattaaat ttattaaagg aacatgtaat gacttggaaa      4800
     acatcaaaaa tcctaatatt gaaaaatata aaccaattga aacggtcttc tccatgatag      4860
     atggaatggc tgcagaaaat agcaacaaag caagaaatag agaagcgact gccgcacctg      4920
     gacagaaaat cacggaatca gccagccata gaatgaccta tggcgacatt aactatctag      4980
     gatcaaacaa agcctttttc tactttgaca gaggaataag agggaaacag gtttttacaa      5040
     actcagtgtc ttctctcaaa ttacagtcac cgtataagga catagtaata atagatgaaa      5100
     taatttttac atcagactgt aaatgtgact catctaatca gcacaaagaa atgtttccac      5160
     actatagagt tacctgtgcg gttggactta cgtgcccggc taggctcaac tcaacagaga      5220
     aaatgtcgta cataagagaa aaaaatgcaa caacggatag atttatgaca gcaagacaaa      5280
     tgttagtgcg gaactggtga aatagtgcga aatatgaaaa gtgccattat acaaagttag      5340
     aatataatat tttaaatgtt aagttttttc tttacaatac caaattacaa tacaaaaaca      5400
     tagaatctaa aaaattgtgc aatataatct tatttaatga gatctttaat gtcgtcgtag      5460
     cattactcgt ataaaagacc aaatcataga atcacttact aataattaag aaaatgttaa      5520
     caaaattttt atatattaat attaaaagga ttatatgtca ctgttaattt tttttattag      5580
     aaaataatat atattgtcat cagagttggg acgaagagag tctaaggatt cttgtaaccc      5640
     gacctacgtt tgtatgaatg agaagggtgg tatgaactgt gtctggaagt ccgacatggt      5700
     ttcatgttat ccttaagcat gaatggagat tgtatggtat gttgtatgac tggatgttat      5760
     tgctgaagaa acagcaataa ctaaccagta ctcatgtatt tttagtattg ttaatccgga      5820
     cctgcgaaca ggaaatattg tttttctctg caggattgcg tcgttatagt gtgttattgt      5880
     gcaaataata tcaactctgt atcgaatgca attgttttgt aactctggag ttaaataaat      5940
     aaataa                                                                 5946
//
ID   CR1-60_AAe  repbase;    DNA;    INV; 3510 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-60_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3510
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1147-1147 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 21 sequences with >91%
CC   identity. Closely related to T1 and Q. This consensus is likely
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3357
FT                 /product="CR1-60_AAe_1p"
FT                 /translation="QQACTGKYQFRNCSSLCDSVPLTQPTVRTAGRDVTPE
FT                 XNSLHNRSXLQPGRTVESFLEAPSSSNTVVHNPASAHHSRPGPVVSRCSGV
FT                 FQSALTGKYDYQNELPLSHINSLFSAVTDGTLGNMMSTTECNQAEAPRLEQ
FT                 IPTLNLGTRSNCKSMMNQHRADNVVIYYQNVGGMNSLLEDYRLSVSDNCYD
FT                 IIALTETWLDCRTTSHSVFGSNYEIFRCDRNRRNSRKSSGGGVLLAVSRKL
FT                 TAYPIENDSWTCLEQVWISIKLADRTLFLCVVYIPPDRVRDNDLIETHCRS
FT                 VLEVAENASANDEVIVLGDFNMSGISWRSSGNGFLYPDPQRSTLHPAATTL
FT                 IDGYSTATLTQINSVTNENNRILDLCFVSSIEVAPPIYRALAPLVKSTIHH
FT                 TPLVISVENQLICEFTIAPKAVHYEFSKADYHGIANLLSSLDWDTILDAED
FT                 VDAAVETFSNVLSYVIDRHVPKQVFQDKTRIPWMTNELRRLKTSKRAALRQ
FT                 YTKHRTPQLKCRYLRLNKEYKRVSQRSYSLYQRGIQRKLRANPKAFWNFVN
FT                 EQRKESGLPSSMLYNGRLGSSTSEICQLFGAKFAEVFSTETLDADQVNLAV
FT                 NGLPIFSHSLSTFHIDESMIADAASQLKTSFNPGPDGVPPAFLKTNIDHLL
FT                 HPLCRLFRLSLSCGTFPSLWKKAHMFPVHKKGCKRDVNNYRGITSLSAVSK
FT                 LFELVVMGPLLSHCKQYLSDDQHGFIAGRSTTTNLLCLTSYATESMTQRAQ
FT                 TDVIYTDLSAAFDKLNHAIAIAKLERLGINGNLLQWFHSYLTDRHLLVAIG
FT                 DCHSDTFSASSGIPQGSHLGPLIFLLYFNDVNLALKGPRLSYADDLKIFLR
FT                 IRSIDDCRFLQQQLDAFANWCSVNRMVVNPDKCSVITFSRKKQPFVYQYTL
FT                 RGTDIERVEHVKDLGVILDSQLTYKQHISYVVDKASRTLGFIFRCAKNFTD
FT                 VHCLKALYSSLVRSSLEYCSTVWSPSYSNGAERIESIQRRFLRYALRRLPW
FT                 NNPFRLPSYESRCQLIRLEPLSSRRDTAKALLIADALGNRIDCPSILEQIN
FT                 VNVQPRALRNSAMLRLPYRSTNYAMHGAINGLQRTFNRVSSLFDYHLSREV
FT                 LRSRFSEYFRR"
XX
SQ   Sequence 3510 BP; 928 A; 874 C; 727 G; 979 T; 2 other;
     caacaagctt gcacaggcaa gtaccaattt cgtaactgtt cttcgttgtg tgattcagtt        60
     cccctcacgc agcctactgt acgaacggct gggcgtgacg ttactcctga aamcaattct       120
     ctacacaacc gatcgamcct tcagccagga cgcaccgtag aaagcttttt ggaagcccct       180
     agttcctcta acacagtcgt gcataatcct gccagcgctc atcacagccg tcctggccct       240
     gttgttagta ggtgttcggg ggtcttccag tctgctttga caggcaagta cgactatcag       300
     aacgaacttc cgctgtctca tatcaactca cttttcagtg ctgtgactga tgggacactc       360
     ggtaatatga tgagcacaac ggaatgcaac caagccgaag cgccacgctt agaacaaatt       420
     ccaacgttga accttgggac tcggagtaac tgtaagtcta tgatgaacca acatcgtgcc       480
     gacaatgtag tcatatacta ccaaaatgtc ggtggtatga atagcttgtt ggaggattac       540
     cgcttatctg tttctgacaa ttgctacgac ataattgctc taaccgaaac ctggctcgat       600
     tgtcgcacca catcccactc agttttcggt tccaactatg aaatttttcg ctgcgaccgc       660
     aatcgaagga acagtcggaa gtcatcagga ggtggcgtcc tgctagccgt aagccgaaaa       720
     ttaacagctt atccaatcga aaacgattca tggacctgct tggaacaagt ttggatatcc       780
     ataaaattag cagaccgcac gctgtttcta tgtgttgtat acataccacc agatcgcgta       840
     cgtgacaatg atctcatcga aactcattgt cgatcagttc tggaggttgc agaaaacgct       900
     tctgctaacg acgaggtcat cgtgttgggt gatttcaaca tgtctggcat ttcttggcgg       960
     tcatccggga atggttttct atatccagat ccccagcgtt caaccctgca tccggctgca      1020
     acaactctca tcgacggtta tagtacagct actcttactc aaatcaacag tgtgaccaac      1080
     gaaaacaatc ggattttaga tctttgcttt gtcagttcga tcgaagtggc tccaccgatt      1140
     tatcgcgccc tcgccccgtt agtgaagtca accatccacc atacccctct tgttatttcc      1200
     gtcgaaaacc aattgatttg cgagtttact atcgctccca aggctgttca ctatgagttc      1260
     tcaaaagccg attaccacgg tattgctaat ctgctttcta gcctggattg ggacactatt      1320
     cttgacgccg aagatgtgga tgcagcagtg gaaaccttct cgaatgtgct ctcctacgtt      1380
     atcgatcgac atgttccgaa acaggttttt caggacaaaa cgcgtatccc ttggatgacc      1440
     aacgagcttc ggcgactaaa aacttcgaaa cgagccgcct tacgacaata caccaagcat      1500
     cgcactcctc agctaaaatg ccggtacctc agattgaaca aggagtataa gcgcgtgagt      1560
     caacgctcct actcacttta tcaacgtgga attcaacgaa aactgagagc taatccgaaa      1620
     gctttttgga attttgtgaa tgagcagcgt aaagagtctg gcttgccctc atcaatgtta      1680
     tacaacggcc gattgggatc atcaacttca gagatttgtc aactcttcgg tgccaaattc      1740
     gccgaagtgt tctccaccga aacgttggat gcggaccaag tcaaccttgc cgtcaatggg      1800
     ctgcctatat ttagtcattc gctaagcacc ttccatattg atgaatcgat gatagccgat      1860
     gctgcttccc aacttaaaac atcattcaat ccaggacctg acggtgtacc tccagctttt      1920
     cttaagacaa atatcgatca cttactgcac cctctttgtc ggctgttccg attgtcatta      1980
     tcatgcggaa ctttcccttc gctctggaag aaagcacata tgttcccggt tcataagaaa      2040
     ggatgcaaac gagatgtaaa taattatcgt ggaataacat cgctgagtgc agtttcgaag      2100
     ttattcgaac tagtagtcat gggaccacta ctttcccact gcaaacagta tttgagcgat      2160
     gatcagcacg ggttcatcgc tggtcgctct acaaccacca acttgttgtg tctcacttca      2220
     tacgcaactg aaagtatgac ccaaagagcg cagacagatg tgatttatac tgatttgtcc      2280
     gcggcctttg acaagctaaa ccatgccata gcgatcgcaa aattagaaag gcttggaatt      2340
     aacgggaatc ttttacaatg gtttcatagc tatttgacag accgccatct acttgttgcc      2400
     ataggagact gtcactccga cactttctct gcatcatcgg gtatccctca aggaagccac      2460
     ctgggccccc tgatatttct cctgtatttc aacgatgtga atttggcgct taaaggacca      2520
     cgattgtctt acgcggacga tctcaaaata tttctccgca tacgctccat cgacgattgc      2580
     cgttttctgc aacagcaact tgacgccttt gccaactggt gcagtgtgaa tcgtatggta      2640
     gtcaaccctg acaagtgctc tgtgataacc ttctcaagga aaaagcaacc gtttgtctat      2700
     caatacactt tgcgtggaac ggacatagaa cgagtagagc atgttaagga cttgggagta      2760
     attttggatt cccaactcac gtacaaacag cacatttcgt acgtagtaga caaggcatcc      2820
     agaacgcttg ggtttatttt tcgctgtgcc aaaaacttca ccgacgttca ttgtctgaag      2880
     gcactttact cttccttagt ccgttcctcg ctagaatact gctcaactgt atggagccca      2940
     tcctacagca acggcgcaga aagaatagaa tccattcaac ggcgtttcct tcgatatgcc      3000
     cttcgaagac taccctggaa taatcctttt cgtctgccca gctatgagag ccgatgtcag      3060
     ctgattcgtt tggagccact ttcatccaga cgggatactg ctaaggctct tctgatcgct      3120
     gatgcactgg gtaaccggat tgactgccca tctatattgg aacagataaa cgtcaacgtt      3180
     caacctcggg ctttgcgtaa cagtgcaatg ctgcgactgc cctatcgtag cacaaactac      3240
     gcaatgcatg gagctatcaa tggactccaa cgaaccttca atcgcgtttc gtcactcttt      3300
     gactaccact tgtctcgcga agtactccgt agtagattct cagaatattt tagaagatag      3360
     ttgtatttaa atgtctgttt ttgctttaat ttgtttgtaa attttgttcg cttttattgt      3420
     ttgattagtg acgtttcatg tacttatttt tttttatcat catttgggca actcagcctg      3480
     ttgatgaata ccaataaaca ataaaaataa                                       3510
//
ID   CR1-61_AAe  repbase;    DNA;    INV; 2450 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-61_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2450
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1148-1148 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 18 sequences with >98%
CC   identity. Closely related to T1 and Q. This consensus is
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2327
FT                 /product="CR1-61_AAe_1p"
FT                 /translation="LDNFAFRGLKQRNLLRNHLDRTLDLIFTNDAITDCSS
FT                 VDEACQPIVDIDPHHPAFVLTVRSPTIVPFVEVSDEEVRDFGKVDYETLHV
FT                 LLSRVDWSTVYQCNDVDNAVSIFNGKLHECFTHCVPLAMPRRKPAWSNARL
FT                 LYLRRNQSKMQRRFSKRKNDCNKLAFNRASRSYRYYNRYLYGKYVRRVQDN
FT                 LRRHPKQFWSFVNSKRNETGLPSFLSLNGHSASSAEGKCELFASWFASVFD
FT                 TSSQSQADPDAASQSLPTDIIDVDIFEVSHMMVEEALKKLKPSISPGPDGI
FT                 PACILKHCKAVLIAPLKAIFNLSLRCQQFPKAWKMSYMRPIFKKGSRTEVS
FT                 NYRGITSLPAGSKCFEIIMNDVLLQACKTYISQNQHGFFPQRSVISNLCEY
FT                 TSFCIKEMDKGGQVDSIYTDIKAAFDTVDHSILLAKLNRLGASSRICSWLY
FT                 SYLTDRQLLVKIGKAISAPFTPHCGVPQGSNLGPLLFVLFFNDVSHVLSNC
FT                 YLLFYADDLKIYLIVRSINDCRQLQEQLDLFVSWCTLNHLSISVSKCCIIS
FT                 FRRMKSPVLYNYAINGTILNRVDNVKDLGVLLDHQLTFKMHYSETVDKANR
FT                 QLGFIFKIASEFDDPLCLKSLYCSLVRSILEFASVIWSPYDAVWIARIESI
FT                 QRRFVRCALRSLPWSDPLRLPPYEHRCALLGIETLEERRKMNQAVFGAKVL
FT                 RSEIDSPALLRQLNIYAPQRVLRSRQLLYQPPRRTMYGSNNPIDTISRRFQ
FT                 DNYNLFDFNISTNTFKNRLRNRQV"
XX
SQ   Sequence 2450 BP; 703 A; 517 C; 518 G; 712 T; 0 other;
     ttttggacaa tttcgcattc aggggactga aacagagaaa tttattgcga aaccatttag        60
     acaggacgtt agatctaata ttcacaaatg atgctatcac agattgcagt tcagtcgatg       120
     aagcctgtca gccgatagtg gatattgacc cgcatcaccc agcctttgta ctcacagtaa       180
     gatctccgac aatagttcct ttcgtagaag ttagtgatga agaagttcgc gactttggta       240
     aagtggacta cgaaacactc cacgttttgc tttcgagagt ggactggtca actgtctatc       300
     aatgcaacga tgtggataat gcggtgagca tcttcaatgg gaaactacac gaatgtttca       360
     cgcactgtgt accgttagca atgccgcgac gcaaacctgc gtggtctaat gcacgcttgt       420
     tgtatctccg acggaatcaa tccaagatgc agagacgatt ttcaaaaaga aaaaacgatt       480
     gcaacaagct ggcatttaat cgagctagcc gcagttatcg ttactacaat cgatacctct       540
     acggtaaata tgtaaggcgt gttcaggaca atttacgaag acatccaaag cagttctgga       600
     gttttgtcaa ttcaaagcga aatgaaactg ggctgccatc atttttgagc ttgaatggcc       660
     actctgcttc ctcggccgag ggcaaatgcg agctttttgc atcatggttt gcgagtgtct       720
     tcgacacatc gtctcaatct caagcggatc ccgatgctgc gtcacaatcg ttacctactg       780
     atattatcga tgttgacatc ttcgaagtta gccatatgat ggtggaggag gcattgaaga       840
     agctaaaacc atccatatcg ccaggccctg atggtattcc tgcatgcatt ttgaaacatt       900
     gcaaggcggt gttaattgct ccgctaaagg ctatattcaa cctctctctc cgatgtcagc       960
     agttccctaa agcatggaaa atgtcttata tgcgaccgat cttcaagaaa ggcagtagaa      1020
     cggaagtatc gaactatcgt ggaataacct cccttccagc tggatcgaaa tgcttcgaga      1080
     taataatgaa cgatgtttta ttgcaagcct gcaaaacata catttcacag aatcagcatg      1140
     gattcttccc acaacggtca gtaatctcaa atctatgcga gtatacgtca ttctgcatca      1200
     aagaaatgga taaaggggga caggtcgata gtatttatac agatataaag gccgcatttg      1260
     atacagttga tcacagtatt ctcttggcaa agttgaaccg tttgggtgct tcttcgagaa      1320
     tttgcagttg gctgtattcc tatctaactg atcgtcaact actcgttaag attggaaaag      1380
     ccatatcagc tccattcact ccgcattgtg gtgtacccca agggagtaat ttggggccac      1440
     tgttgtttgt cctgtttttc aatgatgtgt cccatgtact ttcgaactgt tacttgttgt      1500
     tctatgcaga tgacttgaaa atctatctca tagtaagaag catcaatgat tgccgccagt      1560
     tgcaagaaca gttggacctc tttgtgagtt ggtgtacgtt gaatcatttg agtattagtg      1620
     tgtctaagtg ctgcatcata tcctttcgta gaatgaaaag tcctgttctg tacaattatg      1680
     ccattaatgg taccatactg aatcgtgtgg ataatgttaa agatttgggt gttttactag      1740
     accatcaatt gacattcaaa atgcactatt cagaaacagt cgacaaagcc aatcgtcaac      1800
     ttggattcat cttcaaaata gcaagtgaat tcgatgaccc tctgtgtcta aaatcattgt      1860
     actgctcgtt agtcagatca attctagagt ttgcttctgt aatctggtcg ccatatgatg      1920
     cagtgtggat tgctagaatc gaatcgattc agcgtagatt cgtgagatgc gcattacgta      1980
     gcttaccctg gtctgaccca ttacggctac cgccctacga gcatcgatgc gcactgctcg      2040
     gtatcgaaac gctagaggag aggcgaaaga tgaaccaagc cgtctttggt gctaaagttc      2100
     ttcgctccga aatagacagc ccagcattgc ttcgccagct taatatatac gctcctcaac      2160
     gtgtgctgcg ttctagacaa ctactatatc aaccaccgag gcgaactatg tatggatcca      2220
     ataatcccat tgacacgata agccggagat tccaagataa ttacaatttg ttcgatttta      2280
     acatctcaac taataccttc aaaaatcggt tgcgcaatcg ccaggtttaa tgtatcctgt      2340
     taagtgttgt ccaagagttg atgcttagtt tagtttagtt ttaattttat tcattaagac      2400
     catgatgtcg gatgaatctt caatacaaat acaaatacaa atacaaatac                 2450
//
ID   CR1-62_AAe  repbase;    DNA;    INV; 5435 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-62_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5435
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1149-1149 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 23 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           394..1461
FT                 /product="CR1-62_AAe_1p"
FT                 /translation="MESCQICSTSLDSRRAINCSGSCGRIFHFACVGMSKS
FT                 HYSTWCAKIGMFWFCNSCRLNFEPAVYDREKTIMKALRELLIRTDSMDTRL
FT                 GNYVENLRKINNNLSGSHLSSKAGNTSTTSIPTKSFAQRIDELTLDDTYDD
FT                 PIHRSRSGDDTSFFEVLDEVNGSLALLPDKFVVGSNKRVHIVAKPSSSSNR
FT                 NVHRSNVSSPAASVNHRYVSTKQTSATDKNTFSPEFAGVKEFRNPSGTRVE
FT                 SRPTSIPLKVANSVQTPGDVESFYVTPFAPDQLADEVKQYVIEISNTDPSL
FT                 VNVTKLVPRGKNVEELSFVSFKVTISKSASSVVGDQWYWPDGITVRAFEPN
FT                 PKNGAVTRLPTIS"
FT   CDS           1416..5036
FT                 /product="CR1-62_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TESKKWRCYQASDHFVTQRGFADFLNPSSVDLGRMTF
FT                 PVSSVHEGRVTFPVLSGNHLNSICPAEVLIDTAPTLKGSTHFQFHDSSTAT
FT                 HPPTIENESLSNFGSHHSGTVPVLSGKIDQSICLAEAGKDTAPSLKSVSRL
FT                 QSSNTANNRPAAIGPPLASLLVDPLAGDVHRVNESTVTTVAGCNTYHLASF
FT                 PTVSGKSESGICHAEAGNDTAPNVSESSPLQHAPSWRVQPTAVNALQCSSS
FT                 NNLLIYYQNVRGLRTKIDDFYLATAESKFDVIVLTETWLDERIYSAQLFGS
FT                 QYTVFRNDRNQENSTKSRGGGVLIAINRRLCCSLDSSPISSSLEQIWVKIK
FT                 GQYRSLSLGVLYLPPDRKSDLECIHNHVNSIGNVLGQLALKDLALIFGDYN
FT                 QSNLVWIKQENKPPTIDILRSSISASCSALLDGFSLHGLVQINTVLNRNSR
FT                 LLDLLWVNDIALSDCSVHESIDPLIDLDSDHPALETCVNMSSPITFESTDD
FT                 VEGLDFRNANITALKQILAQTDWHGLDTACNVDEAVDHFTQIVNQAIIGNV
FT                 PLRRPHPKPIWGNARLRYLKRSRSAALRRYCQYRNPSTKRIFIEASIDYRI
FT                 YNRFLYRRYTRQTQENLRLNPSQFWSFVKSKKNEEGLPVEIFLGDRQARTS
FT                 ADKSNLLADHFKQVFSSSSASSVLVHKAIEHTPSDILSLDVIAITPELIGT
FT                 AISKLKSSYAAGPDGIPSCLLKKCSTELIEPLAKIFKLSFEQGVFPKRWKA
FT                 SYMFPVHKKGDKRNIENYRGITSLCACSKIFELIVNDALFSACKSYISTDQ
FT                 HGFFPKRSICTNLVPFTSMCLRTMETGAQVDVVYTDLKAAFDRVDHGILLA
FT                 KLNKLGVSGAMIRWFNSYLTDRLLCVKIGTAESYYFTNPSGVPRGSNLGPL
FT                 LFTIFINDVGLILPPECRSFYADDVKLYIIVRCFRDCLQLQSLIHSFETWC
FT                 SDNCLTLSVHKCNVITFHRSKSPILHDYKMNGQSLQRVNNIRDLGISLDAR
FT                 LTFNQHYSDMIAKANRQLGFIFKIADEFHDPLCLKALYCALVRSILEFGSV
FT                 IWCPYHATWIARIEAIQRRFVRYALRYLPWNDPSNLPPYEERCQLLGIETL
FT                 EHRRTTAQAVFVAKLFTGEIDSPEIIGQIGIYVPERNLRSRNFLHLGSRSS
FT                 NYGMHDPIRFMSTRFNEFYSIFDFHDTSTTFCRRIQRELIDRQRNIPI"
XX
SQ   Sequence 5435 BP; 1494 A; 1275 C; 1082 G; 1582 T; 2 other;
     cctggcaaca ctgctcgttt gtttatgtgt tccgtattgg caccagaagt atttcgtttt        60
     agtttgtgac aatctacggt tttattgcca agttccgttt catctaattg cttttgtgtt       120
     ttacttcctg acgtcgtcga agttttatcg gaaaacggac tcgataacat gtttttgtga       180
     agtgaatatt tctgctttgg acgattagca tcacaatata tcccttccca cgcaawtttt       240
     ttccatccgg agcgacatct gttgggcact agcgatatcg taatcttgca tccaacctaa       300
     cattcaactc tgcccgatca cacaatcgca tcgtcgcata caggcataca atattcgtca       360
     tcaagaaact caatcatctt cgatttctgt gagatggaat cttgccaaat ttgttcaacg       420
     tccttggact ccagaagggc tattaactgc agtggctctt gtggcaggat atttcacttc       480
     gcctgcgtag ggatgtctaa atcgcattac tctacttggt gtgcgaaaat tggaatgttc       540
     tggttttgta attcatgccg tttgaacttt gagccagccg tatatgatcg tgagaaaacg       600
     atcatgaaag cgttacgtga attgctcata cgcactgact ccatggatac gcgcctcgga       660
     aattatgtgg aaaatcttcg aaaaatcaac aacaatctct ctggatcaca tctgtcgtca       720
     aaagcgggca acacctcgac cacatcgatt ccgactaaat ctttcgccca acgcatcgat       780
     gagttgactt tggacgatac ttatgatgat ccaatacatc gttcgaggtc aggcgacgat       840
     acttcatttt ttgaagtgct tgatgaagta aatggttctc ttgcgttgct ccccgataag       900
     tttgtcgttg gatcaaacaa gagagtccac atagtggcca agccatctag ctcaagtaat       960
     agaaatgtgc accgttcaaa tgtgtcatca ccggctgctt ccgtaaacca tcgctatgtt      1020
     tccaccaaac aaacatctgc taccgataag aacacgttct ctcccgagtt tgcaggagta      1080
     aaggagttca gaaatccttc tggcactcgc gttgagtctc gtcctacctc cattccgctg      1140
     aaagttgcaa atagcgtgca aactcctggt gacgttgagt ccttttatgt gactcctttt      1200
     gcgcctgatc aacttgccga tgaagttaaa cagtatgtta tcgagatctc aaataccgac      1260
     ccgtccctgg tgaacgtaac caaattagtt ccccgtggga aaaatgtcga ggagctctcg      1320
     tttgtatctt ttaaggttac gattagtaaa tctgcttcga gcgtagtcgg cgatcagtgg      1380
     tattggccag atggtatcac agtgcgagct tttgaaccga atccaaaaaa tggcgctgtt      1440
     accaggcttc cgaccatttc gtaactcaac gwggattcgc cgattttcta aatccttctt      1500
     cggttgattt gggacgcatg acgttccctg tttcatcagt ccatgaggga cgtgtgacgt      1560
     tccctgtttt atcaggtaat catttgaaca gtatatgtcc cgccgaagtg ttgattgata      1620
     ctgcacccac attgaaagga agcacgcatt ttcagttcca cgatagttct acagccactc      1680
     atccgcccac tattgagaat gaatcgctga gcaatttcgg ctcacaccac tcgggtacag      1740
     tccctgtttt atcaggtaaa atagatcaga gtatatgtct tgccgaagcc ggaaaggata      1800
     ctgcaccctc tctgaaaagc gtttcccgat tacagtcatc caatactgcc aacaacagac      1860
     cagcagctat cggccctccg ttagcatcat tactcgtcga tcccctcgcc ggagatgttc      1920
     accgcgtcaa tgaatcgacc gtaactacgg ttgcgggttg caacacatac cacttggcat      1980
     cattccctac agtgtcgggt aagtctgaga gtggtatatg tcacgccgaa gcaggaaatg      2040
     atactgcacc aaatgtgagt gaatcttctc cgttacagca tgcaccttca tggcgagtac      2100
     agcctacagc cgtcaatgca ctccaatgtt cttcgagcaa caacttgctc atatattatc      2160
     aaaatgttcg cggcttacgg actaagatcg atgattttta tttggctacc gccgagtcta      2220
     aatttgatgt catagttctc actgaaacgt ggttggacga gcgaatatat tcggcacagt      2280
     tatttggcag tcaatacacc gtattccgca acgatcgcaa tcaagaaaac agtaccaaat      2340
     cacgtggcgg cggtgtactg atagcaatca ataggcgctt gtgttgcagc cttgattctt      2400
     ccccaatcag ttcttccctc gagcagattt gggtcaagat caaagggcaa tatagatcat      2460
     tgagccttgg tgttctatat ttgcctccgg atcggaaatc tgatttggaa tgtattcaca      2520
     atcacgtaaa ctcgattggt aatgtactcg gtcaactagc cttaaaagac ctggcgctga      2580
     tttttggcga ttataatcaa tcaaacctgg tgtggatcaa gcaagaaaat aaacccccaa      2640
     caatcgacat tcttcgatct agcatatctg catcatgctc agctcttctg gacgggttta      2700
     gcctacacgg cctagttcaa ataaatactg tattgaacag aaactctcgt ttacttgatc      2760
     tcctttgggt taacgacatc gcactctctg attgctccgt gcatgaatct attgaccctt      2820
     tgatagatct tgattctgat catcctgctc tggaaacatg cgttaacatg tcgtcaccta      2880
     ttactttcga aagcaccgat gacgtagaag gacttgattt tcgcaatgcg aatataactg      2940
     cgcttaaaca aatacttgct caaactgatt ggcacggtct tgataccgca tgtaatgtag      3000
     acgaagccgt tgaccatttt actcaaatag ttaatcaagc gattatcgga aacgtgccac      3060
     ttcgcaggcc gcaccccaaa cccatttggg gaaatgctcg acttcgttat ttgaaacggt      3120
     caagatctgc tgctctaagg aggtactgcc aatatcgtaa cccatcaacc aaacgcattt      3180
     tcatagaagc cagtattgac taccgtatat acaaccggtt tttgtatcgg cgatatacga      3240
     gacaaactca ggaaaatctc cgcctaaatc catcacaatt ctggtccttt gtaaaatcca      3300
     aaaagaatga agaaggctta cctgttgaaa tattccttgg agaccgccaa gctcgtacat      3360
     cggcagacaa aagcaacctt ctggcagacc acttcaaaca agtctttagt agctcctcag      3420
     cttcttcagt tctggtacat aaggcaatag aacatactcc aagcgatatt ctcagcctcg      3480
     atgtaattgc gattactccg gaattaattg gaacggccat atcgaagtta aaatcgtctt      3540
     atgcagctgg cccagatgga attccctcct gcctacttaa aaaatgttct actgagctca      3600
     tcgaaccact agcaaaaatt tttaagcttt cttttgaaca aggtgtgttt cctaagcgat      3660
     ggaaagcatc ctacatgttt ccagttcaca aaaaaggaga caaacgaaac atcgaaaact      3720
     atcgagggat aacgtctctg tgtgcctgct cgaaaatatt cgaacttatt gtcaacgatg      3780
     ccttattctc tgcttgcaag agttatatat ctactgatca acacgggttc tttccaaaga      3840
     gatcaatatg taccaacctt gtaccattta cttcgatgtg cttgaggact atggaaactg      3900
     gtgcgcaagt cgacgtcgtt tacacggatc tcaaagctgc gttcgaccgt gtagaccacg      3960
     gtattctact ggcaaagctc aataagcttg gtgtgtctgg agcaatgata cgctggttca      4020
     attcttatct tactgaccga cttctttgtg taaaaattgg tacagctgaa tcatattact      4080
     tcaccaaccc ttcaggcgtt ccacggggca gcaacttagg accgttgctg tttacgattt      4140
     tcatcaatga tgttggactg atcctcccac cagaatgccg ttcattttac gcagatgatg      4200
     ttaaactgta tatcattgtt cgttgcttca gagactgctt acaactacag agcctaattc      4260
     acagcttcga aacgtggtgt tcagacaatt gtctaactct gagtgttcac aaatgcaatg      4320
     taatcacatt tcatcgcagt aagagcccta ttttgcacga ttataagatg aacggccaga      4380
     gtctccaacg cgtcaacaat attcgtgatc ttggaatctc actggatgcc cgcttaacgt      4440
     ttaaccaaca ctactcggat atgattgcta aagcaaacag acaacttggt tttatattca      4500
     agattgccga cgaattccac gatcctctgt gcctcaaagc gttatactgt gcgcttgtac      4560
     gttcgatttt agaattcgga tcagtcattt ggtgtccata tcacgcaacc tggatagcga      4620
     ggattgaggc catccaaaga agatttgttc gctatgccct tcggtatcta ccatggaacg      4680
     atccatcgaa ccttccgccc tacgaagaac gttgccaatt attgggtata gaaaccctcg      4740
     aacataggcg tacgaccgca caggcggttt ttgtagcaaa actgtttacc ggagaaattg      4800
     acagccccga aataataggc caaattggca tttatgttcc cgaacggaat cttcgctcaa      4860
     gaaacttttt gcacctcggt agccgatcat caaactatgg catgcatgac ccgatacgtt      4920
     tcatgtccac gcggttcaac gaattttact cgatcttcga ctttcacgac acctcaacaa      4980
     cattttgtcg gcgaatacaa cgtgaattga tcgatcgaca gcgtaatatt ccgatataat      5040
     catatgaaca tctactaatt tgaacaggtg agtctctgtc caagtcctgt actcagtagt      5100
     tttgtgctat acccttgttt ttatttcatg gattccaacc gacccgctac aaacatcgag      5160
     tatcaactgg atcaatgaac cccgacttcc cgaaaatgtt tttaagttca tctatttaag      5220
     agataagttt taaattgttt tcgtttgttt tctgctgttt actatttata agcttaagtt      5280
     ctctgttatt tttcgaaaag atatggggtt tttacgcttt cttgtttccg gcataatgtg      5340
     gctgactcaa ggaagctttt ccccatccaa cctttttcat taagactaaa aaggtcagat      5400
     gaaataaata aataaataca aatacaaata caaat                                 5435
//
ID   CR1-63_AAe  repbase;    DNA;    INV; 4506 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-63_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4506
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1150-1150 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           697..1548
FT                 /product="CR1-63_AAe_1p"
FT                 /translation="MHTVCEQCANDFTGAVMKCGGFCSXQFCMKCTGMTEE
FT                 THRLLNNNGHLVXMCFACRNILAKTRFSHAISSVNAANQNIIDALKTEIKD
FT                 SILNDIRTEIRDNFKTLVDAVPSTPLTIRPPPLPHSSRNKRQREADVDDDT
FT                 SSRRPPKLLCGTATRNSDVCSVAIDSADTVPDFWLYLSGIQPDVVDDTVRQ
FT                 MVQESLGTNEFKLVKLIPKGKDQRMLTFISFKVGIAADLKEKAMSADTWPK
FT                 GIRFREFENQNLPRAGFWRPSAPVPENTLPQITVTSDXPLNVA"
FT   CDS           1443..4445
FT                 /product="CR1-63_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KPKLATSGFLETIRSCSREYITANNSHIRSSTERGLI
FT                 LNTDIEQPSTLPSVPTSSFLVYYQNVRGLRTKTRELFLELCSCDYEVIAFT
FT                 ETWLHPGIADSELTSNYNVYRCDRNNSTSEFQRGGGVLIAVKKHHRCEVVS
FT                 MSNGEDLEQVVVRIRLPTKTIHVCCIYIRPSSAPSVYEQHASCIQDICAGA
FT                 SMNDAILLLGDYNLPHLVWRYDNDINAHLPTNASSESEISLTESVIASGLF
FT                 QVLNIRNHNDRLLDLAFVNDPDNVEVFEPPSPLLKPDAHHKPFLLNVFLPA
FT                 IEDNEKDDVLHFDFRRYDASALSRDLSNVDWNSILNESTVDDAVNVFYDVI
FT                 YNVIREHVPMRKRRTTRSNNQPWWNNELRTLRNRLRKLRKRYFKHRSEENR
FT                 TLLQTMERHFSTRRTSAFREYIRGLECNAKDDPSSFWTFVKSQRKSNGIPR
FT                 EVSYQNVHASSAEESANLLADFLKSVYNDRPTPVTQEVLDGVVTYDLHMPL
FT                 LNVTVEEVFRRFSDIDASKGPGPDGIPPLFVKQCAEALSLPATIIFNRSLS
FT                 SGVFPALWRIASITPIHKAGNLNNAENYRGISILNCISKVLESFVHEALYR
FT                 TVRSVIPEFQHGFVKGRSTATNLMSFVTCVKNRIEKKHQVDAIYIDFAKAF
FT                 DKVPHTLTIAKLRKMGLPEWIIAWLESYLTERFAFVKVHGYESARFTIPSG
FT                 VPQGSHLGPLLFVLFIADLCDLIQSEKLFYADDLKIFKTILSQMDCCVIQR
FT                 DLDTIRNWCSANGMDTNAEKCKVISFTRSRAPIQQSYSIGVHELDRVTSVK
FT                 DLGVVVDNKVTFNEHIATTTAKAFSLLGFLRRITKSFQDVYALKSIYCTVV
FT                 RSVLEYAVQVWSPYHQVQSNRVERVQKSFLRYALRRLPWNDSIRLPPYEHR
FT                 CMLIGLDTLASRRILLQRVFCFDLLTGNIDCGDLLQQLNIHVPNRRLRHRT
FT                 FLYIPTHRTLYGHHNPLHSCCRYFNDVYDKFDFNITKMTFKNRIRH"
XX
SQ   Sequence 4506 BP; 1255 A; 1047 C; 935 G; 1259 T; 10 other;
     catmcctggc atcactgctg aagtcgtttg ttgttgtcat ctgtgtcgct ctgaagattt        60
     ckatctcatc acctgctttc gcctccacaa atcaacgttc gctgcaaatc gcatcccaaa       120
     gccatcaatt tatcgttagc tgctgctgtt atcgctcaat ttggtcaggt aggatcgtga       180
     ttttaaaata aatccgagtt ggcttgagag tggaagtgcc cgccaccacc gccattgccc       240
     ccwmcakaaa atttcccacc tcgccactct ccacctgtac cagctgctgt caaacccaaa       300
     cgaacaagct cttgttgatc tgccttctcg ctctcgctgc tgcgtawcgg aaatcaaaac       360
     attcatctat tttcaaacct gtacgaatca tccgtcatct aagaaaatag aaagctgttw       420
     cccgctccgt gttatcatta catccatccg aaaacgtccc atataatcca gcaagccgcc       480
     tacatcgctg ttgtttcatc atttgacctg attaccgctg ccatcgaccg tgatcgtaag       540
     tccactggaa gtattttagt gagccatttt gtataccacc tcaactcgct acacccgtac       600
     tctttgctgc cttctcgccg ctcgttgcgc catctagttt ctgagcgttg aacctgatct       660
     tctgataggg tgatccattt tccgtcaagg ctaaagatgc atactgtctg cgagcaatgc       720
     gcaaatgatt tcactggagc ggtgatgaaa tgtggaggtt tctgttcawg ccaattttgc       780
     atgaaatgta cgggtatgac ggaggaaaca caccgtttac tgaataataa cggtcatctc       840
     gtakggatgt gttttgcttg tcgtaatata ctcgcaaaaa cacgtttctc tcatgccatt       900
     tcatctgtga atgctgctaa tcagaacatc attgatgcac taaaaacgga aatcaaggac       960
     agcattttga atgatattcg cactgaaata cgcgataact tcaaaacctt ggttgacgcg      1020
     gttccatcga cgcctttgac aatacgacca cctccgttgc ctcattcgtc aagaaataag      1080
     agacaacgtg aagctgacgt tgatgacgac acttcctcaa gacgcccacc gaagctgctc      1140
     tgtggaactg ccactcgcaa ctctgacgtt tgttccgttg ctattgattc ggcggataca      1200
     gtaccagatt tctggttgta tttgtccggt atccaacctg acgttgttga tgacactgta      1260
     cggcaaatgg tacaggagag ccttgggaca aatgagttta aattggtgaa gcttattcct      1320
     aaggggaaag accagcgtat gcttacgttc atttctttca aagttggcat tgccgctgac      1380
     ttgaaggaaa aagctatgtc cgccgacaca tggcccaagg gaatccgttt tcgtgaattt      1440
     gaaaaccaaa acttgccacg agcgggtttt tggagaccat ccgctcctgt tcccgagaat      1500
     acattaccgc aaataacagt cacatcagat cwtccactga acgtggcttg atactgaata      1560
     cggacatcga gcaaccatcc acgctgcctt ctgttcctac ttcctccttc ctcgtgtatt      1620
     atcaaaatgt ccgtggcctc agaacgaaga cgagagagct ttttttagaa ctatgcagct      1680
     gtgattacga agtcatcgca tttactgaaa cttggctgca cccgggtatt gctgattctg      1740
     agcttacatc taactataat gtttaccgct gtgaccgcaa caattcaaca agtgaatttc      1800
     aacgtggtgg aggtgttttg attgctgtca agaagcatca ccggtgcgaa gtagtttcga      1860
     tgtcaaacgg agaagatctt gagcaagtag tggtgcgaat tagacttcct accaaaacga      1920
     tccacgtctg ttgcatttac atcaggccta gttctgcccc atcagtttac gaacaacacg      1980
     cttcttgcat ccaagatatt tgtgctggag cttcgatgaa cgatgccata ctattactag      2040
     gggactataa tctaccacat cttgtgtggc gatacgacaa cgatataaac gctcatctcc      2100
     caacgaatgc atcttccgaa tccgaaatct cgctgacaga atcagtgatc gcatctggac      2160
     tgtttcaagt tttgaatatt cgcaatcata acgatcgact gctcgaccta gcttttgtga      2220
     acgatccaga caatgtagag gtgtttgagc cgccttcgcc tctactgaaa cctgacgcac      2280
     accataagcc gtttctgtta aacgtttttc tacccgcaat cgaagataac gaaaaggacg      2340
     atgttttaca tttcgacttc cggcgatatg atgcaagcgc tcttagtaga gatctgtcta      2400
     atgtcgactg gaattcaatt ctcaacgaaa gcactgtaga cgatgcagtc aacgtttttt      2460
     atgacgtgat ctacaacgta atccgcgaac atgtaccgat gagaaagcgc cgaacaactc      2520
     gcagcaataa tcaaccgtgg tggaacaatg aacttcgtac attgcggaac aggcttcgca      2580
     agcttcgaaa acgatatttc aaacatcggt ccgaggaaaa cagaactctt cttcaaacaa      2640
     tggaaagaca tttttcgacg cgacgaactt ccgcttttcg tgagtatatt aggggcttag      2700
     aatgcaatgc caaagacgat ccttcatcat tctggacatt tgttaaaagt cagcgaaaat      2760
     caaatggtat accgcgtgaa gtaagttacc aaaatgttca tgccagttct gcagaagaat      2820
     ccgcaaattt attagccgat tttctgaaga gcgtttacaa tgacagacca acaccagtta      2880
     ctcaggaggt acttgatggt gttgtgacct atgatctgca tatgccactc ctcaatgtaa      2940
     ccgtcgaaga agttttcagg cgcttctctg atatcgatgc ttcaaaaggt ccaggaccgg      3000
     atggaattcc gccattgttt gttaaacaat gtgcggaagc gctctctctt cctgcaacaa      3060
     taattttcaa tcgatcgctt tcaagcggag ttttcccagc tttatggagg attgcgtcca      3120
     tcactcctat ccataaggca ggaaacctga acaacgcaga aaactaccgt ggcatttcta      3180
     tcctcaactg catttcaaaa gttctagaga gtttcgttca cgaggcattg tatagaactg      3240
     tacgttcagt gattccggaa tttcagcatg gctttgtcaa aggtagatct actgcaacga      3300
     acctcatgtc ttttgttaca tgtgtgaaaa acaggataga gaagaaacat caagtcgacg      3360
     ctatatacat tgacttcgcc aaggcgttcg ataaagtacc gcatacccta acaattgcaa      3420
     aactacggaa aatgggactt ccggaatgga taattgcgtg gctagaatcc tatctaaccg      3480
     aacgatttgc tttcgttaaa gtacatgggt atgagtctgc tcggtttaca ataccgtctg      3540
     gggttcctca aggcagtcac ctcggaccac tgctattcgt gttatttatt gcagacctat      3600
     gcgatctgat tcaatcagaa aagttatttt atgccgacga tttgaaaatt tttaaaacga      3660
     ttctctctca aatggactgt tgcgtaattc aacgcgattt ggacacaata aggaattggt      3720
     gcagcgctaa cggaatggat accaatgctg agaaatgtaa ggtaatatca ttcactcgat      3780
     cccgagcgcc gattcaacaa agttactcaa tcggagttca tgagctggac cgtgtcactt      3840
     ccgtaaagga tttgggagtt gtcgttgata acaaggttac attcaatgaa cacattgcta      3900
     caactactgc gaaagctttt tctctccttg ggtttctgcg aagaataacg aaatcgttcc      3960
     aagatgtgta cgcactcaaa tcaatctact gtacggtagt ccgcagtgtt ttggagtacg      4020
     ccgttcaagt gtggtcacca taccatcaag tccaaagcaa tagagttgaa agagtccaaa      4080
     aatcattctt gcgatatgct ttacggcgcc tgccgtggaa cgactcgata aggttgccgc      4140
     catatgaaca ccgatgcatg ttgattggac tggacacgct agcgtcgaga aggatactgc      4200
     tacagagggt gttctgtttt gatcttctga cggggaatat cgattgcgga gatttgcttc      4260
     aacaactgaa cattcatgtc ccgaaccgtc gcctacgcca tcgaactttt ttgtatattc      4320
     cgacacatcg cactctttac gggcatcata accctctaca ctcttgttgt cgatacttta      4380
     atgacgttta tgataaattc gattttaata ttactaagat gacgtttaaa aataggataa      4440
     ggcattaaaa taagtttcag tctgtacaat taaattgaaa attgaagacg tagaataaat      4500
     aaataa                                                                 4506
//
ID   CR1-64B_AAe repbase;    DNA;    INV; 2646 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-64B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2646
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1151-1151 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >92%
CC   identity. The consensus is 5'-truncated and ~77% identical to
CC   CR1-64_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2574
FT                 /product="CR1-64B_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="EQSIVCVKLQKSSIYICGIYLRPNSQPVLYSSHSAAI
FT                 QQLSERISRFDSIVVVGDYNLPQLIWQTDDDINGLLPSNASSEQEVTLLET
FT                 MVASGFQQINNIVNSNGRLLDLAFVNDNNDVELLEPPTPLLRMDNHHKPFV
FT                 LRIDVNDSCTQVGDSNHADDFDFRYCNFDELKSAIATVEWATLFIGKDTDE
FT                 TVCTFYEVLHRILDEHVPRKRRRRTHPFKHPWWTSELQHLRNIVRKSRRRY
FT                 FQSRTVENRDKLRLLEASYIDCQTASFRRYVARMETTAKEDPSAFWTFIRN
FT                 RKRVNKFPAEMAFRDTVANSPEGIANLFADFLENVHCTNPPTFSPDSLRNC
FT                 PTFDLNLEPFDFAQQDVLSALQKLDTSKGPGTDNLPPLLFKECADSFQIPL
FT                 TIIFNKSLQSRTFPMLWKTASVIPIFKAGSTRGVENYRGISILCCLAKIFE
FT                 ELVHNVLYTASQPLISQFQHGFVKKRSTTTNLMTFTSFLSTEIENKHQVDA
FT                 IYFDFSKAFDKVPHDLAISKLRHLGFPNWIADWLRSYLTNRKAFVNINGTY
FT                 SRVISVTSGVPQGSVLGPLIFVLFINDLCFRLKSGKLFYADDLKIYRTIAS
FT                 HLDCCALQADVNELELWCQENGMELNIKKCKSIAFSRRQSRTEFDYKIGSE
FT                 PLERVESIRDLGVIIDTKVRFNDHISVINAKAFAALGFVRRSTNDFNDIYA
FT                 LKSLYCSLVRSILEYAACVWAPHHTTQIVRLEKVQRSFIRYALRQLPWSDP
FT                 VNLPDYPARCMLINLEMLDARRNNLQRLFVFDLIMGNIDCPALLEDVQFYA
FT                 PLRQLRERDLLQIRRHRTSYGFNNPLSRCFRLFNCASALFDFNVSKYVFKN
FT                 RLKDF"
XX
SQ   Sequence 2646 BP; 709 A; 641 C; 556 G; 740 T; 0 other;
     gagcaatcga ttgtatgtgt aaagctgcag aagtcgtcaa tttacatctg cggaatctat        60
     cttcgtccca actcgcaacc tgtattgtac tcatcgcact ctgcagcaat ccaacagctc       120
     agtgaacgga tctcgcggtt tgattcgatc gtcgtcgttg gagattataa cctccctcaa       180
     ctaatctggc agactgatga tgacatcaat ggactacttc cttccaacgc ctcatccgaa       240
     caagaagtca ccctgcttga aacaatggtt gcttctggat ttcagcaaat caacaacatt       300
     gttaactcaa atggacgcct tctggatctc gctttcgtga atgacaacaa cgacgttgag       360
     ctacttgagc ctccgactcc tctcctcaga atggacaacc atcacaagcc gtttgttctc       420
     cgcattgacg ttaacgatag ctgcacgcaa gtaggtgatt caaatcacgc cgacgatttt       480
     gactttcgat attgtaattt cgacgagctg aaaagcgcta tcgctaccgt cgaatgggct       540
     acactgttca ttggtaagga cacggacgaa acggtatgta ctttttatga agttctgcat       600
     cgcattctgg acgagcacgt tccgcgtaaa cgacgaagac gtacacatcc tttcaaacat       660
     ccatggtgga catccgagct gcagcacctt cgtaatattg ttcgtaaatc tcgaaggcgt       720
     tattttcagt cacgaactgt tgagaaccgt gacaagcttc gtctcctaga agccagctat       780
     atcgactgtc aaacagcctc gttccgacgc tacgttgctc gcatggaaac gactgcaaag       840
     gaagatccct ccgccttctg gaccttcata cggaatcgca aacgtgtgaa caaattccca       900
     gctgaaatgg ctttccgaga caccgtcgct aactcccccg aaggtattgc taatttgttt       960
     gcagactttc tcgaaaacgt acactgcaca aacccgccga cgttctcgcc ggacagtctc      1020
     aggaattgtc ccactttcga tctaaacctc gagccttttg actttgctca gcaggatgta      1080
     ttatctgcct tgcaaaaatt ggacaccagt aaaggccccg gtaccgacaa tcttccgccg      1140
     ttactcttca aggaatgtgc cgattctttc caaattccat tgacaatcat tttcaacaag      1200
     tcgctccaaa gcagaacttt tccgatgctt tggaagacag cctcagtcat cccgattttt      1260
     aaggcaggct ctactcgtgg tgttgaaaat tatcgaggaa tttcaattct gtgctgtctg      1320
     gcgaaaattt tcgaagaact ggttcataat gtcctgtaca ctgcatctca accgctgata      1380
     tctcaattcc aacacggatt tgttaaaaag cggtcaacga caacgaatct catgacgttt      1440
     acgagtttcc tctcgacgga aattgaaaat aagcaccaag ttgatgccat atactttgac      1500
     ttttccaaag cattcgacaa ggtaccccat gatctcgcca tttctaagct cagacacttg      1560
     ggctttccaa attggatagc tgattggctg cggtcatatc tgacaaaccg aaaggcattt      1620
     gttaacatca atggcacata ttctcgcgtc atctctgtaa cgtctggtgt gccgcaggga      1680
     agtgtgcttg ggcctctgat tttcgttttg ttcataaacg atctgtgctt tcgtctgaaa      1740
     tccggaaagc tgttttacgc cgacgaccta aaaatttata gaaccatcgc atctcacctg      1800
     gactgctgcg ctcttcaagc tgatgttaat gaacttgaat tgtggtgcca ggagaacgga      1860
     atggagctca atataaaaaa atgtaaatcc atcgctttct cccgtcgaca atcacgcacc      1920
     gaattcgatt ataagatcgg atcggaaccg cttgaacgcg tggaatcaat tcgtgatctt      1980
     ggagtaatca tcgatacaaa agtgcgtttc aacgatcata tctctgtaat taatgctaag      2040
     gcgttcgcgg cccttgggtt cgttcgtcgc agtacaaacg atttcaatga tatttatgcg      2100
     ctcaaatcgc tgtactgctc gttagttcgc agcatattag agtacgcagc atgtgtatgg      2160
     gcaccgcatc acaccactca aatcgtcagg ctggagaaag ttcaacggag ttttattcgg      2220
     tacgcccttc gacagctgcc ttggtcagat cccgtcaact tgccggatta cccagcacga      2280
     tgtatgctca tcaatctgga gatgttggac gccagacgta acaacctaca aaggctcttc      2340
     gtttttgatc tcatcatggg aaatatcgat tgtcctgcac ttctggaaga cgttcagttc      2400
     tacgcgccgc ttcgtcaact gagggaacgt gatttgctgc agataaggcg tcacaggact      2460
     tcttacggat tcaacaatcc gttgtctaga tgttttcgtt tgttcaattg tgcgagtgcg      2520
     ttgtttgatt ttaatgtgtc taagtatgtc tttaagaata ggcttaagga tttttagctt      2580
     aagaaacagt ctgtggaatg taacaattcg agacggtgac aataaataaa taaataaata      2640
     aataaa                                                                 2646
//
ID   CR1-64_AAe  repbase;    DNA;    INV; 4551 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-64_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4551
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1152-1152 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 23 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           726..1598
FT                 /product="CR1-64_AAe_1p"
FT                 /translation="MMEICNSCAVMMNAPEVVCSGFCKATFHYKCAKVSES
FT                 FYREICGNPAVFWFCRGCCDLMKSARFKNAMTSTNAATLELKDAYQKVVED
FT                 LKTEIKESLIAELKQEIQGGFNKLSPAVLSPVPRHFQFNYRATPKRMRDDD
FT                 TSGPTEHPPKIFCGTGQSSSNVLSESTSSPDDKFWLYLTRISPEVTENDVL
FT                 NLAKECLQTSEVVAKSLVPRGKPLSMLSFVSFKVGVNKGHKSKAMDPATWP
FT                 QGIQFREFVDQESNARHFWKPPQRIDPGASSSNQLQSSQQTSTQPCITLS"
FT   CDS           1478..4492
FT                 /product="CR1-64_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PRVERPTFLEAPAAHRPGSIIIESTPIQSANLNAALH
FT                 HSELNRRSPRSTAATRNYLTVYYQNVRGIRTKTQELFLSLSSSDYDIIVLT
FT                 ETWLRPDIANAEFAANYNIFRCDRNSATSNLQRGGGVLIAVKAALNCRSVV
FT                 LENCNNLEQTVVLVKLQQSSIYVCGIYLRPNSLPVLYASHSAAIQQLCERI
FT                 SSSDTIVVVGDYNLPQLVWQMDDDVGSLLPSNASTEQEITLVERMVASGLH
FT                 QINSLLNSNNRLLDLAFVNEVNDVELIEPPSSLLRVDRHHRPFVLRIDVSD
FT                 IRRQLAGNPNQADEFDFRRCNFAELEAAISSIDWNSLFHGMDTDQTVCIFY
FT                 ETLYEILDEHVPRRRRRRHFYKQPWWTSELQHLRNVVRKSRRRYFRSRTVQ
FT                 NRDNLRIIESRYKECQTTSFRNYVTNMETTAKQDPSGFWTFIRNRKRANRF
FT                 PAEMTFNDTVANSPEGVANLFAEFFESVYCTNSPTFSPDSVSNCPAFDLNV
FT                 ARFDVTQQDVSSALRKLDITKGPGTDNLPPLFLKECADSLQIPLTIIFNRS
FT                 LHDSTFPMLWKTASITPIFKAGSTRAVENYRGISILCCLGKVFEELIHSVL
FT                 YTACQPLISEFQHGFVKKRSTTTNLMTFTNFLSTEIENKHQVDAIYFDFSK
FT                 AFDKVPHDLAIAKLRHLGFPNWIALWLQSYLTQRKAFVSINGTRSRVISIT
FT                 SGVPQGSVLGPLIFILFINDLCFRLKSGKLLYADDLKIYRVIMSHLDCCAL
FT                 QNDIDELVNWCQQNGMELNIKKCKSIAFSRRHSRIDFEYMVGSERIECVDS
FT                 IRDLGVTVDSKLRFNEHVSLTTAKAFAALGFVRRTTNYFKDVYALKSLYCS
FT                 LVRSILEYAVCVWSPHHTTQIVRLERVQRSFIRYALRQLPWSDPVNLPEYP
FT                 ARCRLIDIETLASRRNNLQRLFVFDLLKGNLDCSSLLDNVPFYAPNRHLRE
FT                 RDLLLIRRHRTSYGFNNPLSKCLRLFNSVSALFDFNVSKYVFKNRIKDLD"
XX
SQ   Sequence 4551 BP; 1205 A; 1145 C; 966 G; 1235 T; 0 other;
     tctggcaacc ctgctgcgct acttagctgt gtttttgttg tgtcatccgt ttcatcaata        60
     tttcatcgaa aaacgccacc cacaattcat ctacgcaacg tcagatcgct tgaacccggc       120
     caatcttttc ccgcacgatt aatctgctac tcccagccag gtaggatcag tgaattctgt       180
     gcaattccga gctggctcga gtgtggtttt gagaaaatcg ctctccgcca ttgccccatc       240
     aataaaaatc tcccacctcg ccactctcca cctgcgctgc tcttgcaagc cccgtgcatt       300
     acaccattcg ccaaaacata aacaatcatc cattgctcct gccagcagcg catcaactgc       360
     agttaattat cgctccaaac tcacccacct gtatcagctg agccaataaa cttcagttgc       420
     tcctgctgtt cttctcgctc tgcagtccga aattcccacc aaccccgcat agaggaccga       480
     acccaaattg catcaatttc cgcatcgctg caacttcatc gtttttgctt tgctgacgat       540
     tgccaaggta aacaatacaa acttcaccga cagctttgtg agtaggaaga cagagaaacg       600
     acatttcggc atctgtcatc gccagtgttg ccagttccgc cgacttttga tctgcttatt       660
     gctgttacgc ttgggtgacg cttctgtgct tctatttcgc cgatttaaat cgacagtttg       720
     aagagatgat ggaaatttgc aacagctgcg cagtaatgat gaatgctccg gaagttgtat       780
     gtagtggatt ttgcaaagca actttccatt ataaatgcgc taaagtgtcg gagtctttct       840
     acagggagat ttgcggtaac ccagctgtgt tttggttctg cagaggttgc tgcgatctga       900
     tgaagagcgc ccgtttcaaa aacgctatga cttcgacaaa cgctgccact ttggaactca       960
     aggatgctta ccagaaggtg gtcgaagact tgaaaacgga aataaaagaa agtcttatcg      1020
     ccgagctgaa gcaggaaatc caaggcggct tcaacaaatt atcccctgca gtgctttctc      1080
     cagttcctcg gcatttccaa ttcaactatc gtgcaacacc taagcgaatg cgcgatgacg      1140
     atacatccgg gccgacggaa catccaccga agatcttctg tggcactggc caatcatcga      1200
     gcaatgtgtt aagcgagtca acctcaagcc cggacgataa attttggttg tatctgacga      1260
     gaatttcacc agaagtcact gagaacgacg tgctgaatct tgcgaaagaa tgcctacaaa      1320
     ctagcgaagt cgtggccaaa tcactagttc cacgtggaaa gccattatct atgctttcat      1380
     ttgtgtcctt caaggttgga gttaataaag gccacaaatc caaagcgatg gatcccgcta      1440
     cctggcccca agggatacag ttccgcgaat ttgttgacca agagtcgaac gcccgacatt      1500
     tttggaagcc cccgcagcgc atagacccgg gagcatcatc atcgaatcaa ctccaatcca      1560
     gtcagcaaac ctcaacgcag ccctgcatca ctctgagtta aaccgccgtt ccccgagatc      1620
     tactgccgct actcggaact acctgacagt ttactaccaa aacgtcaggg gcatccgaac      1680
     caaaacgcaa gaactatttt tgagtttatc gtcctccgac tatgatatta tagttcttac      1740
     agaaacgtgg ctgcgtcctg acattgcaaa tgcggaattt gctgcaaact acaatatatt      1800
     caggtgtgat cggaattctg ccactagcaa ccttcagaga ggcggtgggg tcctgattgc      1860
     cgtgaaagcc gcattgaact gcagatcagt agtgttagaa aactgcaata acctcgagca      1920
     aactgttgta ctggtgaagc ttcagcagtc gtcgatttac gtttgtggga tctatctccg      1980
     ccccaactcg ctaccggtgc tctacgcctc gcactctgca gccattcaac aactctgtga      2040
     acgcatttcg agctctgaca caatcgttgt tgtaggggac tacaacctcc ctcaattagt      2100
     ctggcagatg gatgatgacg tcggcagttt gcttccttct aacgcctcca ccgaacaaga      2160
     gatcaccttg gttgaaagaa tggttgcctc cggattacat cagatcaata gccttttgaa      2220
     ttcaaataac cgcttgctgg accttgcatt cgtgaatgaa gtaaacgacg ttgagttgat      2280
     cgagccaccg tcttctctcc tccgggtgga ccgccaccac aggccgtttg ttcttcgtat      2340
     tgacgtgagc gatattcgta ggcagttggc aggtaatcca aatcaagccg atgaatttga      2400
     ttttcgacga tgcaactttg ctgagctaga agctgctatc tcttccattg attggaattc      2460
     tttgtttcac ggcatggaca ctgatcaaac ggtatgtatt ttctatgaaa ctttgtacga      2520
     aattctggac gagcatgttc cacgtagacg acgccgacga catttctaca aacagccttg      2580
     gtggacatcc gagttgcaac accttcgcaa cgttgtgcgc aaatctcgta gacgctattt      2640
     tcgatcgcgg accgttcaga atcgagacaa tcttcgtatc atcgaatccc gttacaaaga      2700
     atgtcaaaca acctcgttcc gaaactacgt taccaacatg gaaacgactg caaagcagga      2760
     tccctccggt ttctggacgt ttattcggaa tcgcaagcgt gctaatagat tccctgccga      2820
     aatgacattc aatgacaccg tcgccaactc tcccgaaggc gttgctaatt tgtttgcaga      2880
     atttttcgaa agcgtgtact gcacaaactc accaacgttc tcgcctgaca gtgttagcaa      2940
     ttgtccagca ttcgatttga atgtcgcacg tttcgatgtc acacagcaag atgtttcgtc      3000
     cgccttgcga aaactcgaca tcacaaaggg accagggaca gataatcttc ctccgttgtt      3060
     tctcaaggag tgcgctgatt ctcttcaaat tccgctgacg ataattttca atcgatcgct      3120
     ccatgacagc acttttccga tgctctggaa aacagcctcg atcactccga tcttcaaagc      3180
     aggttctact cgtgcagttg aaaactatcg aggaatctcg attttatgct gcctggggaa      3240
     agtctttgaa gaattaatcc atagcgtttt gtacactgca tgtcaacctc tgatatcaga      3300
     atttcaacac ggattcgtca aaaagcgttc aactacgaca aatctcatga cgttcacaaa      3360
     ctttctctcg accgaaatcg aaaataagca ccaggtagac gccatctact tcgacttttc      3420
     caaagcattt gataaagtcc cgcatgatct cgctattgca aagcttagac acctaggttt      3480
     tccaaattgg atagctctat ggttgcagtc ctatctaacg cagcgtaagg cgttcgtcag      3540
     tatcaacggc acgcgttctc gcgttatctc aatcacgtcg ggcgtgccgc agggtagcgt      3600
     gttaggaccg ctgatattca ttctcttcat caacgacctc tgcttccgac taaaatcagg      3660
     aaaattgttg tacgcggacg atttgaaaat ttacagggta atcatgtctc atttggattg      3720
     ctgtgcgcta cagaacgata tagatgagct tgtgaattgg tgccagcaga acggtatgga      3780
     gctgaatata aaaaaatgta aatctattgc attctctcgt cgacactcac gaattgattt      3840
     tgagtatatg gtcggatcgg aacggatcga atgcgtggat tcaatacgcg accttggagt      3900
     tactgtcgac agcaaactac gtttcaatga gcatgtctcc ctcactaccg caaaggcttt      3960
     tgccgctcta ggattcgttc gtcgcaccac caattatttt aaggatgtat atgcactcaa      4020
     gtcgctctac tgctctttag ttcgtagtat tttagaatac gcagtttgtg tgtggtcacc      4080
     gcatcacacg acacaaatcg tccggttgga gagagtccag cgaagtttta ttcgatatgc      4140
     tcttcgtcaa ctgccatggt ctgatcccgt aaacctgcca gaatacccag cccgctgtag      4200
     actgatagat atcgagacac ttgcttccag acgcaacaat ttacagcgac ttttcgtatt      4260
     cgacctttta aaggggaact tagattgttc atcgcttctc gacaatgttc cattctacgc      4320
     gcccaatcgc catttgcgag aacgggactt gctactcatc aggcggcata gaacgtctta      4380
     tggattcaac aacccgctgt ccaagtgcct tcgtctgttt aatagtgtta gtgctttgtt      4440
     cgattttaat gtgtctaagt atgtttttaa gaataggatt aaggatttag attaagaaac      4500
     agtctgtggg atttcaataa ttcgagacag tgacaaataa ataaataaat a               4551
//
ID   CR1-65_AAe  repbase;    DNA;    INV; 3202 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-65_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3202
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1153-1153 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >95%
CC   identity. This consensus is likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3109
FT                 /product="CR1-65_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="NDHLSANMHRTLSHSGRTTSSTMEAPTPPSTVESLQP
FT                 ALISRPDPVVGRGGGVFQPVLSGKYNKITDSLLPDISPPSSLRIYYQNVRG
FT                 LRSKIDSFFLAISELDYDVIVLSETWLDDCILSSQLFGSNYSVFRTDRSAL
FT                 NSDKGRGGGVLIAVSSRISCSVDSAPVSNQLEQLWVKIVLPRNNVSIGVIY
FT                 LPPDKKNDIDTIQRHIESIGAVHSHLHENDMAMLFGDYNLSDVHWTSDAND
FT                 NVFVDLTRTRLNPASSTLLDGFCFHGLSQVNTIVNSGGRTLDLVLLNDVVL
FT                 PNHSIHEAVEALTTVDVHHPPIESVVSCPLPVVYETVSDNTGFDFKKANFE
FT                 SLNVALRSMDWDRLDSIEDVNEAVAFFTNSVMQAVAEHVPPRRPPSKPPWS
FT                 NSRLRLLKRRRSAALRFYRSHRSQQSKLHFNRSSSEYRSYNAYLFAQYKSR
FT                 TEQNLRSNPKQCWSFVNTKRNEDGLPTSMYLDELSADSASDKCELFAMQFK
FT                 RAFNDYASPASQIDRALQDTPQDVFSYDMFHVSEEEVIGAIGKLKFSYNPG
FT                 PDGIPPALLKRCSSTLLAPLTKLLNHSLRQQVFPACWKKSFLFPIHKKGDK
FT                 RCVSNYRGITSLCACSKVFEIIVNDSLFESCKRYISTDQHGFFPKRSVSSN
FT                 LVEFSTLCIRAIDAGKQVDAVYLDLKAAFDRVDHRILLQKLRKCGVAINFV
FT                 DWFRSYLTERSLCVRIGESESASFTNISGVPQGSNLGPLLFSLFINDVSLI
FT                 LPTGNRIFYADDAKIYMIVESLDDCYRLQHLLNLFEAWCARNCLTLSIEKC
FT                 QVISYGRKRSPIRFPYELSGTTLERVKCVRDLGVTLDEKLTFNCHQNDVIS
FT                 RANKQLGFVLKVSSGFKDPLTLKALYCALVRPILEFAAIVWCPFQNYWISR
FT                 IESVQRKFVRHALKNLPWRDPENLPPYHERCRLLGIDTLEDRRHVAQTMFV
FT                 AKVLRNEIDSPSLLADVNIYAPERTLRRRQFISLGSRNTRYGQHDPVRFMA
FT                 LKFNEAYHLFDFNVTITTLRNHFIQYFRRN"
XX
SQ   Sequence 3202 BP; 868 A; 740 C; 678 G; 916 T; 0 other;
     caatgatcat ctttcggcca acatgcatcg cactctttct cattcaggac gcacaacatc        60
     tagcaccatg gaagccccaa cgcccccctc aacagtcgag tccctccagc cagcgctcat       120
     cagtcgtcct gatcctgttg tagggagagg tggaggggtc ttccagcctg tgctgtcagg       180
     caagtacaac aaaatcactg atagtttgct tcctgacatt tctccgcctt ccagtctacg       240
     catctattat cagaacgttc gtggcttacg ttcaaaaatc gactcgttct tccttgccat       300
     cagtgaattg gattatgacg tcatagtact ttcggagacc tggttagatg attgtatcct       360
     ctcatcgcag ctgtttggaa gcaactattc agtattccgg acggaccgta gtgctttgaa       420
     tagtgataaa ggaaggggag gtggtgtttt aatagccgtg tcatcgcgca taagctgctc       480
     tgtagattct gcgcctgtta gtaaccagct tgaacagctc tgggttaaaa tcgtcttacc       540
     ccgcaacaat gttagtattg gagtgatata cttgccaccc gacaagaaga acgacattga       600
     taccatccag cgccacattg agtcaattgg agctgtccac agtcacctcc atgaaaatga       660
     tatggcaatg ctgttcgggg actacaatct ctccgatgta cattggactt ccgatgcgaa       720
     cgataatgtt ttcgttgatc tgacacgtac acgcctgaat ccggcaagtt ccactctatt       780
     agatggtttc tgcttccatg gtctctcgca agttaataca atagttaact caggtgggcg       840
     tactctcgat ctcgtccttc tcaatgatgt cgttctgcca aatcactcaa tacacgaagc       900
     tgtcgaagca cttaccacgg ttgatgttca tcacccgcca attgaatcgg ttgtatcttg       960
     tccgttacct gttgtctacg aaacggtttc tgacaacaca ggatttgact ttaaaaaagc      1020
     aaacttcgag tcactgaatg ttgctttacg ctcaatggat tgggatcgtc ttgactctat      1080
     tgaagatgta aacgaagctg ttgcattttt cactaattcg gtgatgcaag ctgttgcgga      1140
     acacgttccg ccacgccgac cacctagtaa accgccttgg tcgaatagcc gactgcgtct      1200
     tctaaagcgc cgtcgatctg ctgctctccg tttttaccgg agtcatcggt cacaacagtc      1260
     aaagctgcac ttcaaccgat caagcagtga gtacaggagc tacaacgctt acttgtttgc      1320
     tcaatataaa tctcgtactg aacagaacct ccgatcaaac ccaaaacagt gttggtcatt      1380
     cgtaaacact aaacgaaatg aagatgggct tccaacatca atgtatcttg atgaactatc      1440
     ggctgattcc gcaagtgata aatgtgagct gttcgctatg caattcaaac gtgccttcaa      1500
     tgactatgct tctccagcaa gtcaaattga tcgtgcttta caagatactc cacaagacgt      1560
     gtttagttac gatatgttcc acgtttcgga agaagaagtg attggagcga tcggaaaact      1620
     gaagttttca tacaatccag gtccggatgg gataccacca gcgttactga agagatgcag      1680
     ctccacactg ctggctcctt tgactaagct tctaaaccat tcactccgac aacaagtgtt      1740
     ccctgcgtgc tggaaaaaat cgttcctatt cccaattcac aagaagggtg acaaacgatg      1800
     tgtaagcaac taccgtggca taacttcact atgtgcttgt tctaaggtat tcgaaatcat      1860
     agtcaacgat tccttatttg aaagttgcaa acgatacatc tccaccgatc aacatgggtt      1920
     ttttccaaaa agatccgtct cgtccaatct tgttgaattt tcaacgcttt gtattagagc      1980
     tattgatgcc ggcaaacaag tagacgctgt atatctggac ttgaaggcgg cattcgaccg      2040
     tgtcgatcat cgtatccttc ttcagaaact cagaaaatgt ggtgttgcca taaatttcgt      2100
     tgattggttc cgttcttatc tgactgaacg atcgttgtgt gtgagaatcg gggaaagtga      2160
     atcagcatcg ttcacgaaca tatccggagt accgcagggt agcaaccttg gacctttgct      2220
     gttctcacta tttatcaacg atgtatcact gattttgccg actggaaaca ggatcttcta      2280
     tgctgacgac gcaaaaattt atatgattgt agaaagcttg gacgactgtt accgtttgca      2340
     acatttactc aacttattcg aagcatggtg tgcacggaac tgtttaacat tgagcatcga      2400
     gaaatgtcaa gtcatctcgt acggaagaaa gcgcagccca attcgcttcc catatgaact      2460
     atcagggacg acgcttgaac gtgttaaatg tgttcgtgat ttaggtgtta cattggacga      2520
     gaagctcact ttcaactgtc accagaacga tgtcatctcc agagcaaata aacaacttgg      2580
     tttcgttttg aaagtttcaa gtggattcaa ggatccgcta accctgaaag ctttgtactg      2640
     cgccttagtg cgtccaatat tggagtttgc tgctatcgtg tggtgtcctt ttcaaaatta      2700
     ctggatctca cgaattgaat ccgtgcaaag gaaatttgta cgccacgctt taaaaaatct      2760
     tccttggcgg gacccagaaa acctgccacc gtaccatgag cgttgccgtt tactgggaat      2820
     cgataccttg gaggatagac gtcatgtggc ccaaacaatg tttgttgcta aggttttgag      2880
     gaatgaaatt gattcaccgt ccctgttagc cgacgtaaat atttatgcac ctgaacggac      2940
     actgcgtaga cgtcaattca tcagtcttgg tagtcgcaat acacgctatg gacagcatga      3000
     tcctgtgagg ttcatggctt tgaagttcaa cgaagcctac cacttgtttg acttcaacgt      3060
     cactataact acactgcgga accattttat tcagtatttt agaagaaatt gactgtatgt      3120
     ttagcttaag ttatttattt atacattcat taagacaact tcgtgtcaga tggattaaat      3180
     cagaaataca aatacaaata ca                                               3202
//
ID   CR1-66_AAe  repbase;    DNA;    INV; 3349 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-66_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3349
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1154-1154 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..3255
FT                 /product="CR1-66_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="YSKRFQPSNETPAISHDVQPGCTPVSLVEASYPLVTV
FT                 EPILPATSSHPGPVYEYGEEVFQTLFAGKYSCDSSNFSPVTSVASSDIPTR
FT                 KSDTKSAAPDDFASDNPANRLPNVITDDLDNNQSCHALRFYYQNVRGLRTK
FT                 VDSFFLAVSECDYDVIVLTETWLDDRFQNAQLFGSKFIVYRTDRNAANSSK
FT                 RRGGGVLIAVSTHLNSFIDPTLTSIALEQLWIKISTPSRTISVGVIYLPPD
FT                 RRDNMDYIRDHLNSMNSVLSNLALNDCVLQFGDYNQPNLLWEASDDGFLRV
FT                 NSQSILSTAGSTLVDGFYFHGLTQLNGIPNRNSRFLDLVLGNDEARYSCNV
FT                 TEAIEPLIDLDVDHPALDVILNLPDSITFEDCSDNSQMYDFRRADYAGIHA
FT                 AISRIDWQPIDDANNIDDAVTYFNHVVQDIIAQNVPLCRPKPKPPWSNSHL
FT                 RQLKRNRAKSQRHYCRNRSQFTKQEFNRASNAYRTYNRLLYRRYVVRTQTS
FT                 LRRNPKRFWSFVNSKRKEVGLPRSVHLDGQTATSEQEKCFLFAQHFQKTFH
FT                 DSPATPDQIAAAIEYTPRDVFDFRSFTIDEQTVQTAFRKLKMSHAPGPDGI
FT                 PSCILKNCSHSLATPLAKLFSRSLQEGKFPDEWKVSSMFPVYKKGDKKDVH
FT                 NYRGITSLCSCSKLFEILINDALFNSCKSFISTAQHGFFPKRSVTTNLTEF
FT                 VSLCLRTLDSGGQIDTIYTDLKAAFDRVDHGILLAKLDKLGVSHSLVRWFE
FT                 SYLTNRLLYVKIGSSQSESFTNSSGVPQGSNLGPLLFLLFINELSQLLPPG
FT                 CRLFYADDVKIYMIIDSTADCELLQSRVNIMANWCSSNFLTLSVNKCNVIS
FT                 FHRRQKPIIFDYRICDTVLNRVDQVKDLGITLDQEMNFKPHYNDVIAKANR
FT                 QLGFIFKLSDDFRDPLCLKALYCSLVRSILEFSVVVWCPYQSCWIARLESV
FT                 QRRFLRYALRHLPWRDPLNLPAYEDRCRLLGIETLEQRRRRAQAVFAAKLI
FT                 VGDIDSPELLRQLNIYAPERVIRQRNFLQLVPRNRLYGMNEPLRASADALN
FT                 EAFTAFDFNLPLISFIRRLSLS"
XX
SQ   Sequence 3349 BP; 896 A; 788 C; 682 G; 983 T; 0 other;
     atcgctgttc gtacctgata ctcgaaacgt tttcagccat cgaatgaaac accagccatt        60
     tcgcacgatg ttcaaccggg atgcacgcct gtcagcctcg tggaagcctc ctatcctctc       120
     gtcacagtcg agcctatcct gccagcgacc agcagccatc ccggtcctgt gtacgagtat       180
     ggagaagagg tcttccaaac tctctttgca ggcaagtaca gttgtgattc gagcaatttc       240
     tctccggtaa cgtctgttgc ttctagcgat attcctacac gtaaatcgga tactaagtcc       300
     gcggcgcccg acgattttgc ttccgacaac cctgccaacc gccttcctaa cgttattact       360
     gatgatttgg acaacaacca atcgtgtcat gctctgcggt tttattacca aaatgttcgt       420
     ggacttcgta ccaaggtgga ttctttcttc ttggctgtca gcgaatgtga ctacgacgtc       480
     attgttttga ccgagacatg gctggacgac agatttcaaa atgcgcaatt gttcggatcc       540
     aaatttattg tctaccgcac tgatcgaaat gcagcgaaca gctcaaaacg ccgtggtgga       600
     ggcgtcctaa tagcagtgtc tacgcatttg aacagtttca tcgatcccac tttgacgagc       660
     atagcacttg agcagttatg gattaaaatt tcgacgccaa gccgaacgat tagcgttgga       720
     gttatttatc ttcctccaga ccggcgtgac aatatggact acatacgcga tcatttgaat       780
     tccatgaatt ctgttttatc caatttggct ctcaacgatt gcgtattgca gtttggtgat       840
     tacaaccagc cgaatttgtt atgggaagca tcagatgacg gatttcttcg agtgaattct       900
     caatctatac tctcaaccgc cgggtctaca cttgttgatg gtttttattt ccacggttta       960
     acgcaactta atggaatacc gaacagaaat tcacgatttt tggacctggt gctaggcaac      1020
     gatgaagcaa gatactcctg taacgtaacc gaagcgatag aacctctcat cgatcttgac      1080
     gttgaccatc cagccttgga cgtaattttg aatcttcctg attcgataac atttgaagat      1140
     tgtagtgaca attctcagat gtatgacttt cgccgagctg attacgctgg aattcatgct      1200
     gctatttctc gtattgattg gcagcccatc gatgacgcta ataatattga cgatgccgtg      1260
     acatatttta atcacgtagt tcaggatatt attgcccaaa acgttcctct gtgccgtcca      1320
     aaacccaaac ctccatggtc caacagccat ctacgccagc taaaaagaaa tagagcaaaa      1380
     tcacaacgtc actactgccg caatcgttcg cagtttacga agcaggaatt taatcgcgcc      1440
     agcaatgcct atcgtactta taaccgtctg ctgtatcgtc gatatgtagt tcgtacgcaa      1500
     acatcacttc ggagaaatcc aaaacgattc tggtcgtttg tcaattccaa gcgaaaggaa      1560
     gttggtttac ctcgatcagt acacctcgat gggcaaactg caacttcaga acaagagaaa      1620
     tgttttctat tcgcgcaaca ttttcaaaaa acgtttcacg actcccccgc cacacctgac      1680
     caaatagctg ctgctattga atatactccc agagatgttt tcgacttccg ctcttttact      1740
     atcgatgaac aaactgtcca aacagccttc agaaaactga aaatgtcaca tgcgcctgga      1800
     ccggatggaa ttccgtcttg cattttaaag aattgctccc attcgctggc cactcctttg      1860
     gccaagttat tttcccgatc actgcaggaa ggcaagtttc ctgatgaatg gaaagtttcc      1920
     agcatgtttc ctgtctataa aaaaggcgat aagaaagatg tgcataacta cagaggcatc      1980
     acatctttat gctcctgctc caaattattc gagattctca taaacgatgc tttgttcaat      2040
     tcttgtaaat cttttatttc aactgctcag catggatttt ttccgaagcg atcggttact      2100
     acaaacctaa cggaatttgt ttctctctgc cttcgtactc tggattccgg tgggcaaatt      2160
     gatacaatct atacggatct aaaagcagcg tttgaccgag tggatcacgg cattctgcta      2220
     gctaagcttg ataaacttgg agtttctcat tccttagtgc gttggtttga gtcatatcta      2280
     acaaaccgct tgctatacgt gaaaattgga tcatcgcaat ctgagagctt cacaaattca      2340
     tctggagtac cccagggcag taatcttgga ccgcttctgt tcctgctgtt catcaacgaa      2400
     ctctctcagc tgctacctcc tggatgtcgg ttgttctatg cagatgacgt taaaatctac      2460
     atgatcatcg acagcactgc ggactgcgaa ttgctgcaat cacgggtgaa cataatggca      2520
     aattggtgct cttcaaactt tctgacactc agcgtcaaca aatgcaatgt catttcattc      2580
     caccgcagac agaagccaat cattttcgat taccggattt gtgatacagt tctcaaccga      2640
     gtggatcagg ttaaagattt gggcatcact cttgaccagg aaatgaattt caagccacac      2700
     tacaatgacg tgatcgcgaa ggcaaaccgg cagcttggat ttattttcaa gctttctgat      2760
     gacttccgcg accctttatg tttaaaagca ctgtattgct cgttagtccg ttccattttg      2820
     gaattcagcg ttgttgtctg gtgtccgtac caaagttgtt ggatcgcaag attggagtca      2880
     gtacaacgca gattccttcg gtacgcactt cgacatcttc cctggcgaga tcctctaaac      2940
     cttcctgcct acgaggatcg ctgtcggttg ctgggaatcg aaacgttgga gcagagaaga      3000
     cgtagagcgc aagctgtttt tgcggctaag ctgatcgttg gtgatatcga ctctccggag      3060
     ttactaaggc aattgaatat atatgcacct gaacgagtaa taagacaacg caactttctt      3120
     cagctcgtgc ctcgcaatcg tttgtatggc atgaatgaac ctcttcgtgc ttctgctgat      3180
     gcgctcaacg aagcctttac tgcttttgat tttaatttgc ctttgattag ttttatccgt      3240
     agattgtcat tgagctagat ttttatgttt tttttttcat taagacaaac agatgtcaga      3300
     tgaataacaa cttcaataaa taaataaata aataaataaa taaataaat                  3349
//
ID   CR1-67_AAe  repbase;    DNA;    INV; 4996 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-67_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4996
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1155-1155 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 25 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1183
FT                 /product="CR1-67_AAe_1p"
FT                 /translation="MACNKCDKVVNDSDLITCRGYCGNSFHMICMKLDYSV
FT                 REVLNANKKNMFWLCDSCSELFSNDQFRKISSRHINDMPEDTPLKSIKDDI
FT                 AGLKQIVSALSSKIDAKPLTPVFNSWRKMDGIQTIPNTPKRIREDVQSTIK
FT                 PSIIRGSKAASEMVKTVRPPEDLFWLYLSAFEPSTSDSEIVAFVKECMSST
FT                 EVDPKVVRLVAKNKDPSTLSFVTFKVGVPKTLKDVALSSETWPDNIYFREF
FT                 DNNSKNQRRLVRITAERSPIVVT"
FT   CDS           1123..4929
FT                 /product="CR1-67_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="FKKPTSFSQDYCREEPDCGDITSCWIPGRTLALRFME
FT                 ASDPLSTVEPFLPATISRPGPVSEYGDEVFQNPVSGKYSVYSSNSLPDMTT
FT                 ASSTTTSLAISSLRTPGRKLSISPKEASHSPSTVEPFLPSTCSRPGPVFGI
FT                 DEEVFRIPPSGKYDTSATVPLSEKFIASSQASSESAPVLLATTTTTSPAVS
FT                 SFRTPGRTFSTSPKEASHSPSTVEPFLPSTCSRPGPVFGIDEEVFRIPPSG
FT                 KYDTSATVPLSEKFIASSRASSEAVPEHSSSISGITLATTDTTTSLPSSSG
FT                 SLLTGIEEHVNTRSKWGGITVYYQNVGGLNSSIQDYHLACSDCCYDVIVLT
FT                 ETWLNDNTRSSQIFGASYEVFRCDRNPENSRKATGGGVLIAVRKEFEASAV
FT                 DDQHWRNAEQVWVRIKLGNHNLYMAAVYIPPDRIRDDSVYDALIRSATSIS
FT                 SNATVCDEFVILGDFNLPGVKWKHTSNGFLSIDTEQSSYPLSANALIDSYS
FT                 FANMRQINDCVNENGRTLDLCFASLQDVAPDISIAPNVLVKFVPHHPPLLL
FT                 MLNNNELVTLTETVESVYYDFNKADYESISNVLHSIDWYSILDHENVEGAT
FT                 QTFSNVLSYVIDRHVPKKAAKTSEHAPWQSRELRRLKREKRAALRNYSKYK
FT                 TLQLKEYYLQINGLYKNMSKACYSAYLRNLQASMKANPKVFWNYVRCQKKE
FT                 NGLPSVMKLNDIEGSNELEHCQLFATKFSGVFSNEHLETEQIIAAASNVPL
FT                 SGLSLNAVNVSNAMIIEAASRLKSSSSCGPDGIPSVLVKKSIENLVTPLQH
FT                 IFQLSLNTGTFPSLWKNAYMFPVHKKGDKSNVDNYRGISALCAVSKLFELV
FT                 ILEPVFFECKHFISNDQHGFMPKRSTTTNLLCFTTYVIDGMAHGLQTDAIY
FT                 TDLSSAFDKINHDIAIAKLSRLGFNGAVLNWFRSYLTGRLLNVKIGDHLSD
FT                 SFAASSGVPQGSHLGPLLFILYLNDVNKLLEGPRLSYADDFKIFLKIAKPN
FT                 DASFLQKQLLIFANWCDLNRMVLNAKKCAVVSFSRSQNPVFYDYSLSGERL
FT                 SRESSMKDLGVILDSKMTFRQHVSYITEKASRNLGLIFRIGKEFRDVYCLK
FT                 SLYCALVRSVLEYGSAVWNPCYLNGSDRIERVQRRFIRWALRNLPWQNRFE
FT                 LPPYEDRCQLIGLDTLSCRRSVTCALCVSDVLSARIDCPAILRYLPFQARI
FT                 RNLRNNSLFRIQFRRTNYSLNCGITGLLRIFNRVASVFDFHYSRATLKQLF
FT                 VTTFKRFM"
XX
SQ   Sequence 4996 BP; 1375 A; 1134 C; 1053 G; 1434 T; 0 other;
     aaaatttggc agcactgcga tcttgtatag tacaactttg tgtgcgcatt ttgttagcaa        60
     atttcaccga tctgttaagt gtctaaattc atgatttttt gttgagtcga ttgattgtgt       120
     tctcctttcg tgttaacaac ggtattgtgc ttgtatcttg tgaattgagc tgattattac       180
     ggcttatcat ctgatcaact ggacgacaac gtagtttctt ctaacaccga cgcaaacatt       240
     tttcgaacag gacgacatct tgcgtgaaaa attggaaaca gaacttgtgt gcaatattga       300
     acggcagccg aagctcttta ctgtaaactc gctatctcgt tagtataaca atcaggcgtt       360
     tcttctgatc gtcgcatttt caccaccaag gatggcttgc aacaagtgtg ataaggtagt       420
     aaacgattct gatctcatta cctgccgtgg atattgcgga aattccttcc atatgatctg       480
     catgaagctt gactattcgg ttcgtgaggt actcaatgct aataagaaaa atatgttctg       540
     gctgtgtgat agctgttcag aattgttttc caacgaccaa ttcagaaaaa tatcttctcg       600
     tcacatcaac gacatgcccg aagatactcc gcttaagtct atcaaggacg atatagctgg       660
     attgaagcaa atcgtaagcg ctctctcttc caagattgac gcaaagccgc taacccctgt       720
     gttcaactct tggcgtaaga tggatggaat tcaaactatt cccaatacac cgaagcggat       780
     acgtgaggat gttcagtcaa ctatcaagcc atctatcatt cgtggttcca aagcagcgtc       840
     cgaaatggtt aaaacagtgc ggcctcccga ggatctgttc tggctttatt tgtctgcatt       900
     tgagcccagt acctcagaca gcgaaatagt agcctttgtc aaggaatgca tgtcatctac       960
     tgaagtggat ccgaaagtcg taaggttggt tgccaagaac aaagatccat cgactcttag      1020
     ctttgttact ttcaaagttg gtgttcccaa aacactaaag gacgtggctt tatcgagtga      1080
     aacgtggccg gataacatct acttccggga gttcgacaat aattcaaaaa accaacgtcg      1140
     tttagtcagg attactgcag agaggagccc gattgtggtg acataacttc atgttggata      1200
     ccgggacgca cacttgccct acgctttatg gaagcctctg atccactcag tacagtcgag      1260
     ccattcctgc cagcgaccat cagccgtccc ggtcctgttt ctgagtatgg tgacgaggtc      1320
     ttccaaaatc cagtttcagg caagtattct gtttattcga gcaattccct tcctgatatg      1380
     actaccgctt ctagtacaac gacatcactc gcaatatcat cccttcggac accaggacgc      1440
     aaactttcca tcagccctaa ggaagcctct cattctccaa gcacagtcga gcccttcctg      1500
     ccatcgacct gcagtcgtcc tggtcctgtg tttggaatcg atgaggaggt cttccgaatc      1560
     ccgccttcag gcaagtacga cacatccgcg acagttccac tctctgaaaa gtttatcgct      1620
     tccagtcaag catcttctga atctgcacca gtgcttttgg caactactac aacgacatca      1680
     cccgcagtat catcttttcg gacaccagga cgcacatttt ccaccagccc taaggaagcc      1740
     tctcattctc caagcacagt cgagcccttc ctgccatcga cctgcagtcg tcctggtcct      1800
     gtgtttggaa tcgatgagga ggtcttccga atcccgcctt caggcaagta cgacacatcc      1860
     gcgacagttc cactctctga aaagtttatc gcttccagcc gagcatcttc tgaagctgta      1920
     ccagagcatt cgtcaagtat ttctggaatt acactagcaa caaccgacac aacgacatct      1980
     cttccgtcat ctagtggttc tctactgacg ggtatagagg aacatgttaa tactcgtagc      2040
     aaatggggtg gtattaccgt ctattaccaa aacgtcggtg gattgaactc ttcaatccag      2100
     gattatcatc ttgcgtgctc ggattgctgt tatgacgtca tcgttttaac tgaaacctgg      2160
     ttgaacgata acaccagatc gagtcaaatt tttggtgcta gctacgaagt ttttcgatgt      2220
     gacagaaacc ccgaaaatag tagaaaggca acaggaggtg gtgttttgat agctgtgcga      2280
     aaagaatttg aagcttcagc tgtcgatgac cagcattgga gaaacgcaga acaggtatgg      2340
     gtccgaatta agctgggcaa tcataattta tatatggctg ctgtttatat tcctcccgat      2400
     cgtatccgcg atgactctgt ttacgatgct ttaattcgat cagcgacgtc catctcgtcg      2460
     aatgctactg tgtgtgacga attcgtcatt cttggcgatt tcaatcttcc tggcgttaaa      2520
     tggaaacaca caagtaatgg gtttttatca atcgacactg aacaatcctc atatccactc      2580
     agtgctaatg ccctgataga tagctatagt tttgcgaata tgcggcagat caacgattgt      2640
     gttaacgaaa acgggcgaac tttggacctg tgtttcgcta gtcttcagga tgttgctcca      2700
     gatatctcga ttgccccaaa tgttctagta aaatttgttc cgcatcaccc tccactcctt      2760
     ttaatgttga acaataatga attggttaca ttgacagaga ccgttgagtc tgtgtactat      2820
     gacttcaata aggcagatta cgagagtatc agcaatgtac ttcactcaat tgattggtac      2880
     agtatacttg accacgaaaa cgttgaagga gctacgcaaa ctttttcaaa cgttttatct      2940
     tacgttattg acagacatgt tcccaaaaag gccgcaaaaa catctgaaca tgcaccctgg      3000
     caatctcgtg aattgcgcag gttaaaaagg gaaaaaagag cagccctacg aaattattct      3060
     aaatacaaaa cgcttcaatt gaaagagtac tatttgcaaa ttaatggtct gtataagaac      3120
     atgagtaagg cctgttattc tgcttatctg cggaatttgc aagcgtcaat gaaagcgaac      3180
     ccaaaagtat tttggaatta cgtaagatgt cagaagaaag agaatggatt accatcagtg      3240
     atgaagttga atgatatcga aggatcgaac gaattggaac attgtcagct ttttgccaca      3300
     aagttttctg gggtcttctc caatgaacat ctggagacgg agcaaataat cgctgccgct      3360
     tccaatgtac cactcagtgg cctttcgctg aatgcagtaa atgtaagcaa cgctatgatc      3420
     atcgaagcag cctcccgcct aaaatcgtcc tcatcgtgtg gtcctgatgg tataccctcc      3480
     gttctggtga agaaatccat cgagaacctg gtcactcctc ttcagcatat attccagctc      3540
     tctttaaata ccggtacttt cccatcgcta tggaaaaatg catacatgtt tcctgtacac      3600
     aagaagggcg acaagagcaa cgtcgacaac taccgtggca tttctgccct ctgcgctgtt      3660
     tcgaagctgt tcgaattggt gatacttgaa cctgttttct ttgaatgcaa gcacttcatc      3720
     tccaacgatc aacacggatt catgccgaag cggtcaacaa caacaaatct gctttgtttt      3780
     actacttacg taatcgatgg aatggcgcac ggattgcaga cggacgccat ttatacggac      3840
     ttatcctccg cgtttgacaa aatcaaccat gatatcgcta tcgccaaatt gtcgagattg      3900
     ggtttcaacg gagccgttct aaactggttt cgctcttatt tgaccggccg tctactcaac      3960
     gtaaagatcg gagaccatct ctcggacagc tttgctgcat cgtctggagt tccccaagga      4020
     agccatttgg gaccgttact attcatcctc tatctgaacg atgtaaataa gcttttggaa      4080
     ggacctcgcc tatcatacgc agacgacttc aaaattttct tgaaaattgc caaaccaaac      4140
     gatgcgagtt ttttacaaaa gcagttactc atatttgcaa attggtgtga tctgaatagg      4200
     atggttttga atgctaagaa atgcgctgta gtttccttct ctagaagtca gaacccagtt      4260
     ttctacgatt acagtttgtc tggcgaaagg ttaagcagag aaagcagtat gaaagacctt      4320
     ggtgtgatac tggactccaa aatgactttc aggcaacatg tttcctacat aactgagaag      4380
     gcgtcaagga atcttggact catctttcgg atagggaagg aatttagaga cgtgtattgc      4440
     ctgaaatccc tgtattgtgc cctagtccgt tcagtgctag aatacggatc agctgtttgg      4500
     aacccttgct atctgaacgg atctgatagg attgaaagag ttcaacgcag atttattcgt      4560
     tgggctttgc ggaatctacc gtggcaaaac cgttttgaac tcccacccta cgaagatcgt      4620
     tgccagttaa ttggattgga cactttaagc tgccgaagaa gcgttacgtg tgctctgtgt      4680
     gtttctgatg tattgtcggc gcgtatagat tgtcctgcta ttctgagata cctaccgttt      4740
     caagcgagaa tccgaaattt gcgaaacaat tcacttttta ggattcagtt ccgccgcaca      4800
     aactacagtt taaattgtgg aatcaccggt ctgctgagaa ttttcaaccg cgtagcttcc      4860
     gttttcgatt tccactattc tagagctact ttaaagcaat tatttgtcac gacgtttaaa      4920
     cgatttatgt aaacctagat taagttttat cattgggact accataaggt ctgttgataa      4980
     taaataaata aataaa                                                      4996
//
ID   CR1-68_AAe  repbase;    DNA;    INV; 4742 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-68_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4742
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1156-1156 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           310..1167
FT                 /product="CR1-68_AAe_1p"
FT                 /translation="MACERCQKKISTKKERVVCHGYCGASFHAVCVNVDGP
FT                 LQEQLAQNGKNVFWMCDGCAGLFTNAHFRVMMTNFDGKASVLPEAFQSMRL
FT                 QIEQLQSAVDALTTKVEEKSSTPTPFATPNLWPNRDRLNTPVNSTKRRRGQ
FT                 DGHMLGVPTVVGNVGTKAAGVIKTVQLNQRDDDNLLWIYLSAFHPLTSEGQ
FT                 IASLVSECLDLTSTSTKVVKLVPKGKDVNSLQFVSFKVGIAKQLKEKALSS
FT                 DSWPENIQFREFDDLRSKNSRRIVSLLSIEDKPLTMETAESNSAT"
FT   CDS           1074..4673
FT                 /product="CR1-68_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="SSLKKQSTNSQFAVNRGQTIDNGNRRIELRNLKSTSS
FT                 SNQLGRTQGSTLEAPSDPVTVEPCSTVNINQVSCHHSRPGPVNGGLEGVFQ
FT                 PALPGKYSCIFSRPIPEDSSNSSFNTKHPAEEHEPHANQPKAPLNSISCPS
FT                 SSLDQPGRTQGGTLEAPSDPVTVEPCSTVNINQVSRHRSRPGPVNGGLEGV
FT                 FQPAIPGKYACPVELSTAEDFSNFSSNSGTSSSAYRSNFSQTVSTSKYNTS
FT                 RPIAPNPLTIFYQNVRGLRTKTTDLRLALSSCDYDVIALTETWLGSDILNS
FT                 EFSSDYAIYRLDRNPATSQLQRGGGVLIGVKKHLHCKLVTLDNAENLEQVA
FT                 VCISLPTQAVYICCVYIRPNSDTAVYSDHALCVQQLCELAETTDSVIALGD
FT                 YNLPRLLWEFDADMNSYIPVNASSEQEITLTQAVLSCGLQQIQDVRNENER
FT                 LLDLAFVTDTDRIEIFESPCGILKLDAHHKPFIIKLDYSSNPDDIIQDRCY
FT                 YDFNSCNEDSIHARLRSIDWETFLSDCDVDDAVSRFYSTVYDIIHEYTPIR
FT                 RRRHRIHFKQPWWTPELRNLRNRLRKVRKHFVKNRTEENRQSLRAAEEQYS
FT                 VRLHTAFHAYILRNESNAKRDPSSFWTFVKKLKRNAGIPHDVCYRDENAAT
FT                 VEETADLFAKFFKHVFSNTAPSHSPDEHREWQSSLMHYDFPVPQLNVTFEE
FT                 IKKVLSSVDPSKGPGPDNLPPKFVKQFAASLASPITIIFNRSLLNGVFPAV
FT                 WKIASITPIHKTGNIHNVENYRGISILSCIPKALEKIVYDVVYQAVRPIIS
FT                 EYQHGFVKKRSTTTNLMVFVNSLVTSVEKRRQVDAVYVDFSKAFDKVPHLL
FT                 AVDKMKCLGLPDWTTQWLRSYLTDRTAFVNINGINSSSFEIPSGVPQGSHL
FT                 GPLIFILFVNDMCNLLSSFKLMFADDLKIYRVIESQLDCCALQEDIDRLLR
FT                 WCTLNGMQMNIQKCSVISFNRLREPLRFDYTIGQTNLHRVYAVKDLGITMD
FT                 SKVRFNEHIAAITAKAFATLGFLKRNTNAFQDIYALKSLYCALVRSLLEYG
FT                 VVVWAPFHAVQVNRIEAIQRNFIKYALRILPWNDTVNLPPYEERCRLISLD
FT                 SLATRRKLLQRMFVFGLLNGDVDCNSLLGQLNFSIPQRPLRNYSLLWQPAH
FT                 RTNYGYNEPWAMCCRLFNETCDVFDFNLSKSAYKHRIKYLA"
XX
SQ   Sequence 4742 BP; 1324 A; 1117 C; 990 G; 1311 T; 0 other;
     ccactcacgc tctgagaata cagattgttt gtttacctct gtgttgaatt agttgaattt        60
     taacgttgtt tacgaaatat taaatatttg ttttaagttg attgaaaccg tattgtgagc       120
     agtgtataat ttttgtgcca aagctatcgt ctgtaaccgt tatttgtcca gaatagcact       180
     atcaaaaaag gaacattcag tgttgttaga tagcaatacc gtcactcagt gccaatcaat       240
     tgtcccatac ttcagttcat cgtgcactgc attcgtcttt cgtactgccg atttgcacct       300
     cttctcatca tggcttgtga gcgctgccag aaaaaaattt caaccaaaaa ggaacgtgtc       360
     gtttgccatg gctattgtgg cgcgtcgttc cacgcagttt gtgtgaacgt tgacggacct       420
     ctccaagagc aattggcgca aaatggaaaa aatgtgtttt ggatgtgcga tggatgcgct       480
     ggcttattca caaatgctca cttccgtgtg atgatgacca actttgatgg gaaagcttca       540
     gtcttgccag aagcatttca atctatgcga ttgcagattg aacagttgca atctgctgtg       600
     gacgcattaa cgacaaaagt tgaggaaaaa tcgagcacgc ccacaccctt tgctactccg       660
     aatttgtggc ccaatagaga tcgcctcaac acccctgtga attcaacgaa acgtcgtaga       720
     ggccaagacg gtcatatgtt gggcgttcca acggttgtag ggaatgtagg caccaaggca       780
     gctggcgtta tcaaaactgt gcaattgaat cagcgagatg acgataattt gctttggata       840
     tatctctcgg cttttcatcc attgacctct gaagggcaga ttgcctcgct cgtcagtgaa       900
     tgtttagatt tgaccagtac atcgacaaaa gtagtgaagc tagttcccaa aggaaaagat       960
     gtcaattcac tacaatttgt ttccttcaaa gttggcatcg ctaaacagtt gaaggagaag      1020
     gccctttcga gtgattcatg gcctgaaaat atccagtttc gggaatttga tgatcttcgc      1080
     tcaaaaaaca gtcgacgaat agtcagtttg ctgtcaatag aggacaaacc attgacaatg      1140
     gaaaccgcag aatcgaactc cgcaacttga aatcaaccag ctcttcgaat caactgggac      1200
     gcacgcaagg aagcactttg gaagcccctt ctgaccccgt aacagtcgag ccatgttcca      1260
     ccgtcaacat caaccaagtt tcctgccatc atagtcgtcc cggtcctgtt aacggaggct      1320
     tggaaggggt cttccagcct gcacttccag gcaagtactc atgtatattc agtcgaccga      1380
     ttccagaaga ttcttcaaat tctagcttca acaccaaaca tcccgccgaa gagcacgaac      1440
     cacatgcgaa ccaaccaaaa gcacctctaa acagcatttc ctgcccatcg tcatcattgg      1500
     atcaaccagg acgcacgcaa ggaggcactt tggaagcccc ttctgacccc gtaacagtcg      1560
     agccatgttc caccgtcaac atcaaccaag tttcccgcca ccgcagtcgt cctggtcctg      1620
     ttaacggagg tttggaaggg gtcttccagc ctgcaattcc aggcaagtat gcgtgtcctg      1680
     tagaactttc caccgctgaa gacttttcga attttagctc gaactccggc acatcatcca      1740
     gcgcttatcg atcgaacttc agccaaacag tctccacgtc aaagtacaac acctcccgcc      1800
     cgattgcgcc aaatcctctt acgatattct accaaaatgt ccgtgggttg agaaccaaga      1860
     ctaccgatct tcgtctagcg ctctcgtcct gtgattatga tgtcatcgcg ttaactgaaa      1920
     cgtggctcgg tagtgacata ctaaactccg agttttcttc cgattatgcc atataccgct      1980
     tagatcgaaa tccagccact tctcaactgc aacgcggagg cggggtgctg atcggcgtca      2040
     agaagcatct gcactgtaaa ttagttacat tggacaatgc cgagaatttg gagcaagttg      2100
     cggtgtgtat atcgttgcca acgcaggccg tctacatatg ttgtgtatac ataaggccga      2160
     attctgacac tgctgtttat tcggatcacg cattatgcgt gcaacaactg tgtgagcttg      2220
     ctgaaactac cgactcagtc attgctttgg gagactacaa cctacctagg cttctgtggg      2280
     aattcgatgc tgacatgaat tcttacattc cggtaaatgc ctcctctgaa caagaaatca      2340
     ccttaacaca ggcggttctt tcatgtggat tacagcaaat tcaggatgta cgcaacgaaa      2400
     acgagagact acttgatcta gctttcgtaa ctgatactga cagaatcgaa attttcgaat      2460
     ctccctgtgg aattttaaaa cttgacgctc atcataaacc ttttattatc aaacttgact      2520
     acagcagcaa tcctgacgac atcatacaag atcgctgtta ttatgatttt aactcttgca      2580
     acgaagattc aatccatgct cgattaagat cgattgattg ggaaacgttt ttgtcggact      2640
     gtgacgttga cgacgcagtt tctcggtttt atagcacagt ctacgatatt atccacgaat      2700
     acactcccat tcgaagacgc agacatcgca tccacttcaa gcagccttgg tggactcctg      2760
     aactccgcaa cctccgaaac agattacgca aagttaggaa acactttgtc aagaatcgta      2820
     cagaagaaaa taggcaatca cttcgtgccg ccgaagaaca atactccgtt cgtctgcata      2880
     ctgctttcca tgcttatatt ttgcgtaacg aatcgaatgc aaagcgggat ccatcttcct      2940
     tttggacttt tgtcaaaaag ctaaaacgta atgccggcat acctcacgac gtgtgttata      3000
     gagatgaaaa tgcagctacc gtggaagaga ccgcggatct cttcgcaaag tttttcaaac      3060
     acgtattttc aaataccgct ccctctcatt ctccggacga acaccgcgaa tggcagagca      3120
     gtttgatgca ttacgatttt ccagtaccgc agttaaatgt aacttttgag gagataaaga      3180
     aagtcctctc atccgttgat ccctctaaag gacctggccc cgacaactta ccacctaaat      3240
     ttgttaagca gtttgctgca tcgctcgcct cacctatcac tataattttc aatcgctcac      3300
     tgctaaatgg tgtctttccg gctgtatgga aaatcgcttc catcacgcct atccacaaga      3360
     ctgggaacat ccacaatgtc gaaaattatc gcggaatttc gattctgagc tgtattccga      3420
     aagctttgga aaagatcgta tacgatgttg tgtaccaggc agttcggcca attatttcgg      3480
     aatatcaaca cggctttgtg aagaaacgtt ctacaaccac caacctgatg gtttttgtca      3540
     actcgctggt tacttcagtt gaaaaaagac gccaagttga tgcagtatat gttgatttca      3600
     gcaaagcttt tgataaagta ccgcacttgc tagcagtgga taaaatgaag tgtttgggtc      3660
     tacctgattg gacaacgcaa tggctgagat cttatttaac cgaccgcacc gcttttgtca      3720
     acattaacgg catcaattcg tctagcttcg aaataccatc gggggtccct caaggaagcc      3780
     acttaggacc cttgattttc atcttgtttg tgaatgatat gtgtaacctt ctgtcttcgt      3840
     ttaagttaat gtttgccgac gacttgaaaa tttatcgagt gatagagtct caacttgatt      3900
     gttgtgctct ccaggaggat attgatcgtc ttttgcggtg gtgtacattg aatggtatgc      3960
     agatgaatat tcaaaaatgt tctgttatat ctttcaaccg tctgcgcgag cctctgcggt      4020
     tcgactacac gataggacaa accaacttgc accgtgtata tgcagttaaa gacttgggca      4080
     tcactatgga ctccaaagtc cggtttaatg agcatatagc cgcgatcact gctaaagcat      4140
     tcgccacgct gggatttttg aaaaggaaca cgaacgcgtt ccaggatatc tatgcgctca      4200
     aatctctgta ctgtgccctt gttcgcagcc ttctggaata cggagttgta gtttgggctc      4260
     ctttccacgc tgtgcaggtg aacagaatag aagcaatcca acggaatttc atcaagtacg      4320
     ctctaagaat tcttccctgg aatgataccg tgaacttacc gccctatgaa gaacgatgta      4380
     ggctgatcag cttggactca ctagcaacta ggagaaaact attgcaacga atgtttgtat      4440
     ttggcttact gaatggtgat gtagattgca actccctttt gggacaactc aatttctcca      4500
     ttccccaaag accccttcgc aactacagtc ttctgtggca accagctcat cgcaccaact      4560
     atggatacaa cgagccatgg gccatgtgct gccgtttgtt caacgaaaca tgtgacgtct      4620
     ttgatttcaa tttgagtaag tctgcgtata agcatagaat taaatatcta gcttaagtaa      4680
     atatctgtgc aacactagtt gaagatgtaa gaaataaata aataaataaa taaatataaa      4740
     ta                                                                     4742
//
ID   CR1-69_AAe  repbase;    DNA;    INV; 3988 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-69_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3988
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1157-1157 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..773
FT                 /product="CR1-69_AAe_1p"
FT                 /translation="MCPACRKLMXGTRFRGAINSTNDLLQAVMSQQNQMLD
FT                 DLRXEIKRNTERINEIVGKQQQQDLPNRSPWPAIQPRSSKRPRIQIDPPQI
FT                 DEDAPRARESKFWLFLSRFSPHATVEEISNLVQRNLDMNEPVEVVKLVRRG
FT                 VEINQLSFVSFKIGMGMKWKEKAMQPENWQXGIYFREFVGVERGPAIFRVX
FT                 RQRNQSNDFFSTPLAPPSRAAVAMQQ"
FT   CDS           919..3909
FT                 /product="CR1-69_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPVNEKXAVNIYYQNMNSIRGSDRQKSLYLSSXELDY
FT                 DACAFSETYLDSSVQDXLLFNSCFSVYRCDRNRNNSEKHSGGGVLIAVHRR
FT                 LACREFARAENNEAICVRIDAMNGNIFLCCGYIPPTSNVHRYQSFAQFVES
FT                 IIETVGPHDVVLVFGDFNLPNLKWNQRFQEGNNCFLLPDRITTQSEMAIVD
FT                 GFLSAGLMQVCDLPNQNNNYLDLIFTTDTESCQAVVTDPIIKHEVHHYAMQ
FT                 LTIATDTLRELEAGMPKTHLNLELMNVASVKEAIRDVSWSNVFISQSEYER
FT                 NSHTHDQQAASMLEFLNSLDVLNCELEFSAIVSNIIDFNVLSFYFVLFSIF
FT                 SRFAPFSRSRSIRESRYPEWFSPILIQVLKDKRKALKKKRRNPSPENIASY
FT                 KELLATFKVLHREAYQVYISKIQNGIKANPKSFWKFVNGRRKNAGVPQVMK
FT                 YGNRSSSNGQDTAQLFAEYFKSVYRDDIPNDYNPPINAHGDVMELSQDEVN
FT                 QGLADLDSSKTAGPDKLPAKILKEFKDELCEPLSILFNSSLSSGYFPHLWK
FT                 ISHITPVHKKGSRSDTENYRGIAIQSATPKLFERLVYCHLYERVSERVSAA
FT                 QHGFLKGKSVVTNLCEFSSMVTDFVSKGYQVDCVYTDMSKAFDVVGIDSIM
FT                 RAVTNFGISGMLFEWIRTYLQGRIQFVRVLNNTSESFSVHSGVPQGSHLGP
FT                 LLFVMVMNDLPSFMTKAIVLIYADDVKIFLPVKIIDDCLLLQHDLRNFERF
FT                 VDVNRLSINPSKCSVITYARRVQPIIFDYSLGHTILRRVETVRDLGVTMDQ
FT                 CLTFNDHINTVVKESLQLFALTRRFGRDFDDPHAILTIYTNLVRTKLDFAS
FT                 VVWRPQYDIHVQRLEAIQRKFVKFALRNLGWTREQMPDYDELCRLVDIDSI
FT                 SNRHQIADIVFFCNILSGRIRSTLLYDRLCFNTSPVSLRRRRVFDPPLRSR
FT                 NYTRHEPTARFMNDFNRLQDVISINMTSDEIRSRLRIFLRDY"
XX
SQ   Sequence 3988 BP; 1176 A; 847 C; 882 G; 1072 T; 11 other;
     caattaccga tgaaagtgat gtagtgacct gtcaagggtt ttgcaaggct acgttccacc        60
     tgaaatgctc acacctcagt gcgagtgcat gggaggaggt cagatcaaac tcgctgatct       120
     attggatgtg tccagcttgc agaaagttga tgwgwggcac gcgttttcgt ggcgctatta       180
     actctacaaa tgatctacta caagctgtga tgagtcaaca aaatcagatg ttggatgatt       240
     tgcggkgtga gataaagagg aataccgaaa gaatcaatga aatagtaggg aaacagcaac       300
     agcaggatct tcctaatcgc tcaccttggc ctgccatcca acccaggtca tcaaaacgcc       360
     cacgcatcca aatcgatccg ccacagatcg atgaagatgc acctcgggca agagagtcca       420
     agttttggtt gttcttgtcg aggttttccc cacacgccac tgtggaggaa atctctaatc       480
     tggttcaacg gaatctggat atgaatgagc ctgtsgaggt agtgaagttg gtccgtaggg       540
     gggttgagat caatcagctc tccttcgtat cgtttaaaat tggcatggga atgaagtgga       600
     aagaaaaagc aatgcagcca gaaaactggc aamagggaat ttatttccga gaatttgtkg       660
     gtgttgaacg aggacctgct atttttcgag ttgakcgtca gcgaaatcaa tcaaacgact       720
     ttttctcaac accacttgca ccccccagcc gagcggcggt cgcaatgcag caataataac       780
     gatgatgacg gactctctga aacaagatgc gaaacgaatt ttacacacac gagatgttat       840
     aatgctgaag gactacctac cctcacggat gaaacaggaa cacaaacgta ccacacgtcg       900
     caatcatcga atttagagat gcctgtaaat gaaaaascag ccgtcaacat ttactatcaa       960
     aatatgaaca gcattagagg gagcgatcgg cagaaaagcc tgtatttgtc atcgttsgaa      1020
     ttggactacg atgcgtgtgc cttcagtgaa acttacctgg actcttctgt gcaagatakt      1080
     ttgctgttca attcatgttt ctccgtctac cgatgcgata ggaacagaaa caatagtgag      1140
     aaacattccg gtggaggagt gctgatagca gttcatcgtc gtctcgcttg ccgtgagttt      1200
     gcacgcgctg aaaataatga agcgatatgc gtwagaatag acgcaatgaa tggaaatatt      1260
     ttcctgtgct gtggatatat tccacctacc tcaaatgttc accgttatca atcgttcgcc      1320
     caattcgttg agtccatcat tgagaccgtt ggcccgcacg acgtcgtgct tgtatttgga      1380
     gatttcaacc taccgaattt gaagtggaat cagcgttttc aagaaggaaa taattgtttt      1440
     ctcttacccg atcggattac tacgcaaagt gaaatggcca ttgttgatgg atttctgtcg      1500
     gctggactta tgcaagtgtg tgatttgccg aaccaaaaca ataactattt ggatctcata      1560
     ttcaccactg acaccgagtc ctgtcaagct gttgttaccg acccgataat caagcacgaa      1620
     gttcaccact acgcgatgca actgacgata gctacagata ctctacgcga attggaagcc      1680
     ggtatgccta aaactcattt gaatttagag ttgatgaatg tcgcgtctgt taaagaagcg      1740
     ataagagatg tttcatggag caatgttttc atttcacaat cagagtatga acgtaattcg      1800
     cacacgcatg atcagcaagc cgcgtcgatg ctcgaattcc ttaattcact cgacgttttg      1860
     aattgcgaac ttgaattttc cgcaatagtt agcaacataa tagacttcaa cgttttgtcg      1920
     ttttacttcg tgttgttcag catcttttca cggtttgctc cattctccag gagtcgatcg      1980
     attcgggaaa gccgatatcc tgaatggttc tctccgatcc tcattcaagt ccttaaagat      2040
     aagcggaagg cacttaagaa aaagcgtcgt aatccatccc cggagaacat tgcctcgtat      2100
     aaagaacttc tggcaacatt caaggtgctg cacagagaag cgtatcaagt ttacatctct      2160
     aagattcaaa atgggatcaa agctaatcct aaatcattct ggaaattcgt aaatggtagg      2220
     cgtaagaacg caggagttcc acaggtcatg aagtatggta acagatcctc ctcaaatgga      2280
     caagacacag ctcaactttt cgccgaatac ttcaagagtg tttatcgcga cgatattcca      2340
     aacgactata atcctccaat caacgcgcat ggtgatgtaa tggaattatc tcaagatgaa      2400
     gtgaatcaag gtttggcaga tctagattca agcaaaacag caggtccgga caaattgcca      2460
     gcaaagattc tcaaagaatt caaggacgaa ctttgtgaac cactatccat tctgttcaac      2520
     tcatcgctct catccggcta ttttccacat ctctggaaaa tctctcacat aactccggtt      2580
     cataaaaagg gctcgcgttc agacactgag aactaccggg gaatagcaat tcagtccgcg      2640
     acaccaaaat tgttcgaacg attagtgtac tgccatctct acgaacgtgt cagtgaacgt      2700
     gtttctgctg cacagcatgg ctttctcaaa ggtaagtcag ttgtgacgaa cctgtgtgag      2760
     ttcagttcca tggtcaccga ctttgtctcc aagggatacc aagttgactg tgtatataca      2820
     gatatgagca aggcttttga cgtcgtggga atagacagta ttatgcgcgc tgtgaccaac      2880
     ttcgggatca gcggcatgct gttcgaatgg ataaggacat acttacaagg cagaatacag      2940
     ttcgttagag tgctcaataa tacgtctgaa tcgtttagtg tgcattcggg agttccacaa      3000
     ggtagccatc ttggtccact gcttttcgtt atggttatga atgatctacc ctcgttcatg      3060
     acaaaggcaa ttgtgctgat ctatgctgac gatgtaaaaa tattcctgcc agtgaagatc      3120
     atcgatgatt gtcttctgct tcaacatgac ctacgcaact ttgaaagatt cgtcgacgtg      3180
     aataggctga gcattaatcc aagcaaatgt tctgtaataa catacgcaag aagagttcaa      3240
     ccaattatat ttgactacag cttgggacac acgatcttgc ggcgcgtaga aactgttcga      3300
     gatctaggtg tgacgatgga tcagtgctta acgtttaacg accacatcaa cacagttgtt      3360
     aaggaatcac ttcaactatt cgcgctgacc cgacgttttg gccgagattt cgatgatcct      3420
     catgctattt taacaatcta caccaaccta gttaggacta agcttgattt tgcgagcgtt      3480
     gtgtggcgtc cccaatatga tatacatgtg caaagacttg aggcaatcca gagaaagttc      3540
     gtgaaatttg cgctgagaaa cctaggatgg actagagagc aaatgcctga ttacgatgaa      3600
     ctttgccgcc ttgtagatat cgacagcata agcaacagac atcagatcgc agacattgta      3660
     tttttctgca atattttgag tggacgcata aggagtacac ttttgtacga tcggctttgt      3720
     tttaacacca gtccagtttc acttcgccgc agaagggtgt ttgatccccc attgaggtcg      3780
     agaaactaca cccggcatga gcctacagct agatttatga atgacttcaa cagactacag      3840
     gatgtaattt ctattaatat gacaagtgat gaaattcgta gtagattaag gatattttta      3900
     agagactact aagaaatttg tttgttaatt ttaagtaagg gtaacgggct tacagcctat      3960
     agtccaaata caaatacaaa tacaaata                                         3988
//
ID   CR1-6B_CQ   repbase;    DNA;    INV; 1832 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_CQ;
KW   CR1-6B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1832
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 7-7 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   The consensus is ~80% identical to that of CR1-6_CQ. Both
CC   termini are truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1831
FT                 /product="CR1-6B_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NGNIDDYFHASSGECYDFIALTETWLKDHTLSSQIFG
FT                 PEYEVFRCNRGPDNSRKTEGGGVLIAARRCFKPRRILKDAWKGVEQVWVSV
FT                 KLADRVLYLCVVYFPPDRTFDKDLYRIHLDSVASVAERARPADDIIVVGDF
FT                 NLPKLTWTPSHDGFLYPDPDRSQFHSCASDLLEGYNMATLQQVNHVENEDG
FT                 RRLDLCFVSAQDFAPTLTTAPIPLAKVVRRHPALIITVAGTHSCTVRDRQD
FT                 TVRYNFRGADYEGMSLALGRINWESVLDSVDVDAAVDTFSSIMRDHIDQFV
FT                 PKVRKRVTYHLPWQTPELRNLKTQKRAAFKVSSRCGTLSLRDYYLSINSRY
FT                 QRLSRSCMASYQRRKQRELKSNPKKFWKFVDENRKESGLPSSLHLADEEAE
FT                 STEDICKLFAKKFASVFSSEPVTEDEARSAADNVPRCDRSLASIEIDEDAI
FT                 SAAVTKLKHSSSPGPDGIPSTLLKRCSSVLQVPLLHLFRLSLASGKFPCAW
FT                 KQAFMFPVHKKGDRRNIENYRGISALCAASKLFELVVIDPIFAHCRQELSS
FT                 DQHGFIPKRSTATNLLCFTEFVIDSFENRSQTDAVYTDLSAAFDKINHNIA
FT                 IAKLEKLGFRGS"
XX
SQ   Sequence 1832 BP; 448 A; 499 C; 445 G; 440 T; 0 other;
     gaacggaaac atcgacgact actttcacgc cagctcggga gaatgttacg atttcatcgc        60
     attaacagag acttggctca aggaccacac gctatcctct cagatcttcg gacctgagta       120
     tgaagttttc cgatgcaatc gaggtccgga caatagcagg aagacggaag gaggaggtgt       180
     cctaatcgcc gcacgtcgct gcttcaagcc gcgccgaatt ctcaaagacg cttggaaggg       240
     cgtcgagcag gtttgggttt ctgtgaaact ggctgatcgt gtgctttacc tatgcgtggt       300
     ctacttcccg ccggatcgga cctttgacaa ggacctgtac cggatccatc ttgattctgt       360
     ggcatccgta gctgaacgag cgcgcccggc tgatgacatc atcgttgtgg gtgacttcaa       420
     tttgccgaag ctgacctgga caccttccca cgacggcttt ttatatccag atcctgatcg       480
     ttctcaattt cactcttgcg caagtgatct cctggaagga tataacatgg cgaccttgca       540
     acaagttaat catgtggaga acgaagatgg gcgtcggctc gatctctgct tcgtgagcgc       600
     acaggatttc gccccaacgc taaccaccgc tccgatcccg ctcgccaagg ttgttcgtcg       660
     tcatcccgcc cttatcatca ctgtggccgg cacccacagc tgcacggttc gtgatcgaca       720
     agacactgta cgctacaatt ttcgcggtgc tgattatgaa ggaatgtcgc tagcactggg       780
     tcgcatcaac tgggagagtg tgttggattc tgtcgacgtc gacgctgccg ttgatacgtt       840
     ctcatctata atgcgagacc acatcgacca gttcgtaccc aaggtcagga agcgtgtcac       900
     ctatcacctt ccgtggcaaa ctccagagct tcgcaacctc aagacacaga agagagctgc       960
     ctttaaagtc tcctccaggt gcggaacact ctctcttcga gattattact tgagcatcaa      1020
     cagcagatac cagcgactga gccgcagttg tatggcaagc taccaacgcc ggaagcagcg      1080
     tgaattaaag tccaatccca agaaattttg gaaattcgtt gacgagaatc gtaaggaatc      1140
     tggactgccg tcgtccttgc acctggccga cgaggaagct gagagcaccg aagatatctg      1200
     taagctgttt gccaaaaagt ttgcaagcgt tttttcaagc gaacctgtaa ccgaagacga      1260
     ggcccgatct gctgccgaca acgttcctcg ttgcgaccgc tctcttgctt cgatagaaat      1320
     tgacgaagac gccatctcag ctgcggtgac taagctaaag cactccagct caccaggacc      1380
     ggacgggatc ccctcgacac tgctgaaacg ttgttcatcg gtattacaag tacccctctt      1440
     acacctattt cgcctatccc tcgcatctgg aaagttcccg tgcgcatgga agcaagcctt      1500
     catgttccct gtccacaaaa aaggcgatcg caggaacatc gagaattaca gaggtatatc      1560
     ggctctgtgc gctgcatcga agctgttcga gctggtggtg attgatccca ttttcgctca      1620
     ctgccgccag gaactatcaa gcgaccaaca tggattcatt ccgaaacgtt ccaccgcaac      1680
     aaatctactc tgttttactg agtttgttat tgacagtttc gaaaatcgct cgcagactga      1740
     cgcggtgtac acagatctgt cagctgcctt tgataagatc aatcacaaca tagcaatcgc      1800
     caagctcgag aaacttggat tccgcggtag tt                                    1832
//
ID   CR1-6_AG    repbase;    DNA;    INV; 4293 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   CR1-6_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; CR1 clade; CR1-6_AG; DNA/RNA-binding; PHD finger;
KW   reverse transcriptase.
XX
NM   CR1-6_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4293
RA   Kapitonov V.V. and Jurka J.;
RT   "CR1-6_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 57-57 (2003).
XX
DR   [1] (Consensus)
XX
CC   CR1-6_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-6_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-6_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-6_AG is composed of the ATAAAC
CC   microsatellite.
CC   CR1-6_AG encodes two protein sequences: a 358-aa CR1-6_AG-ORF1p
CC   (positions 225-1299) and 998-aa CR1-6_AG-ORF2p (positions
CC   1300-4293). CR1-6_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 4-57). CR1-6_AG-ORF2p is composed
CC   of
CC   the AP endonuclease (aa positions 50-230) and reverse
CC   transcriptase
CC   (aa positions 550-780) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           1300..4293
FT                 /product="CR1-6_AG-ORF2p"
FT                 /translation="FAALPTPTYNRPHLTVSFTNRRTSVKSAQTPTCYVPA
FT                 ANALRTARSTASVYYQNVRGLRTKVDEFRLSVLESNFDVIVLTETWLDPSL
FT                 PSALLFDDSFRVYRCDRSVDNSTCSRGGGVLIACSQSLTSREHTTVHPSLE
FT                 LVCVVIQLGNSRLFIIAAYLPPRLAANAATLREIENCIRSLCSTMHPGDGL
FT                 LLLGDFNQPLVSWSAAQHDPDLPFLHYEPRTRSALSALFMDEMHHSGLFQI
FT                 NGHLNTSGRVLDLVFANNAVASVCLPLELCLTPLLAIDTYHPALELAIPLP
FT                 REESAVPALTSRLDYARTDFNRLLPMIASFANVFDCSHYATLDLAVKDFER
FT                 FMLQALNECTPVKRPKRGPPWGDRTLRRLKTAKAAAYRDYLLRRCPAALRN
FT                 YNTAHSLYRRYNRFRYLGHVRRTVLRCRGNSRVLWNFANNRRKSSGFPSSV
FT                 SYNGRNGNNPSAVCDIFASRFAATFLPAVTDERQIADALSNVPVDAMAPNL
FT                 PIIDEYSVSKAIDRLKSSFAPGPDGIPASTLKRCGTTIAPILASIFRDSLR
FT                 SGIYPACWKTSWLVPVHKKGDKSNACNYRGITSLCACAKVFELLVYEPLLA
FT                 AASNYISTAQHGFVPQRSTTTNLVEFVSLCHRTIDAGSQIDAVYTDIKAAF
FT                 DSVPHALLLAKLETLGLPVQLLAWMRSYLTGRTYCVKMGPHTSRRIDASSG
FT                 VPQGSNLGPLLFVIFLNDVTRLLPPDGHLLYADDAKLFLPIRDRSDQLRLQ
FT                 ATLSAFQSWCSLNGLELCVEKCVVVTFARKRCPLVYDYALNGSTIGRKSCV
FT                 TDLGVLLDEKLSFHDQLEHVVTKGNQLIGLLKQIARDITDPICIKTLYCAL
FT                 VRPVLEYASVVWWPTAARPLARLESIQRKFTRFALRSWSVQLDYEGRCALL
FT                 GIETLKQRNCNAQRLFVAGLLDNRIDSPALLSRLNMYVPPRSLRARSLLDV
FT                 EERRTRFGSSDPFIRMCREFNVICDRHQPDMSRTALLNSIRVV"
FT   CDS           225..1358
FT                 /product="CR1-6_AG-ORF1p"
FT                 /translation="MAAICFACAVSLDAADCIVGCAYCEATFHRGCCRLPS
FT                 ELIDAVLTHIDLHWSCTGCTNILKNPRCRSVKEIGAQVGFQAALTSTVAAV
FT                 GKLIEPIIAEVRSGFTLLQNAPIPQLCNTDPRPVAGRKRRRIIEDSMSPDV
FT                 NKNVNIRQNNMFAASSPSAYTNTTVGIPPSSTLPEELMGTDSLSSPLRAAF
FT                 PQPATDRIWIRLSRLSTAVTVEQVVASVKRRLATDDVLAYCLLRKGVSVDS
FT                 VNWLSFKVRVPAALRDAALAPSSWPVGIGVREFVQSRQREHGHSSSPITIK
FT                 HRSLTRTPVVIDRRSMPRTPTSTVYHAPAHASTSQAQTLTSPQLGEHTLND
FT                 TTHGPNSTLIDGPLLIRRTSNTNLQQTTLDRFFHE"
XX
SQ   Sequence 4293 BP; 915 A; 1227 C; 1026 G; 1125 T; 0 other;
     tctgacgtct aactgctcgg tcgcttatcg ctgtgctccg cgtttttcca aaaatattta        60
     agtgtatttt ctaacgtacc cagttaatac tcgttcaact gactaccaaa ctgcttcctg       120
     ttactgttgc gcgttagtgt gttatttcat tgacccacga ctgtgtatta acgtttttaa       180
     tccgggttaa cggtggtgtg atcaaaaccg cacataattt cgcgatggcg gctatctgtt       240
     tcgcgtgtgc tgtgtcactg gatgctgccg actgtatcgt cggctgtgcg tactgtgagg       300
     ctacttttca ccgcggttgt tgcaggctgc cttccgagct gattgatgcg gtcctgactc       360
     acatcgatct gcactggagc tgcactgggt gcaccaatat cctgaaaaat ccgcgctgcc       420
     gatcagtcaa agagatcggg gctcaggtcg gttttcaagc tgctctcacc tcaactgttg       480
     cggctgtggg gaagcttatt gaaccgatta tcgccgaggt gcgcagtgga tttactctac       540
     tgcaaaatgc acccatacct cagctttgca ataccgatcc tcggcccgtt gcgggtagaa       600
     agcggcggcg tatcatcgag gattctatgt cccctgatgt caacaaaaac gtaaacattc       660
     gtcaaaataa catgtttgca gcgtcatcgc caagcgcgta cactaacact acagtcggca       720
     tcccaccctc gtctacgcta ccggaagaac tcatgggaac cgattcgcta tcgtcaccgc       780
     ttcgagcagc gtttccccag ccggccacag acagaatatg gatccgacta tctcgcttgt       840
     ccactgccgt caccgtggag caagtggtcg cttctgtgaa acgccgttta gccaccgatg       900
     acgtcctagc atactgcttg ctgaggaagg gagtcagtgt tgacagcgta aactggcttt       960
     ctttcaaagt gagagtaccg gccgcccttc gtgacgcagc actcgcccca tcgtcctggc      1020
     ctgtcggtat tggtgtacgt gaatttgtac aatcccgtca acgagagcat ggacactcat      1080
     cgtcaccaat caccatcaaa caccgttctc tcacacgcac acctgttgtc atcgatcgcc      1140
     gatcgatgcc tcgcacacca acatccactg tctatcacgc accggcacac gcatcaactt      1200
     cacaggctca aacactaaca tcaccacaat tgggagaaca cacgctgaac gacactactc      1260
     atggtcctaa ttcaacactc attgacggcc cgcttttaat tcgccgcact tccaacacca      1320
     acttacaaca gaccacactt gaccgtttct ttcacgaata gacgaacctc tgttaagtct      1380
     gcacaaacac ctacctgtta tgttcctgct gctaatgcgc ttcgcactgc ccgttccact      1440
     gcctctgttt actatcaaaa cgtgcgggga ctgcgcacga aggtcgatga gtttcgcctg      1500
     tcggtgttgg aatccaattt cgatgtaata gtgcttacgg aaacctggct cgatcctagt      1560
     ctaccttcgg ctttgctgtt tgacgatagc ttccgagtct accgatgcga tcgtagtgtt      1620
     gacaacagta catgttcccg cggtggaggt gtgttgattg cgtgctctca gtctctgacg      1680
     tcacgggagc acacaacggt gcatccatcg cttgagctag tgtgcgttgt aatacaacta      1740
     ggcaattccc gactattcat cattgctgca tacctcccgc ctagacttgc cgcaaatgct      1800
     gccacgctcc gtgaaatcga aaattgcatt cgctcattat gctcaactat gcatcccgga      1860
     gacggtttac tcctgttagg agacttcaac caacctctcg tctcctggtc agccgctcag      1920
     catgatccgg atttgccatt tctgcattat gagccacgta cgcgatcggc tctctccgct      1980
     ctgtttatgg acgagatgca tcatagcgga ctcttccaga tcaatggtca tcttaacacc      2040
     agcggacgcg tcttagacct ggtgtttgca aataatgctg ttgcttctgt ttgccttccg      2100
     cttgaacttt gcctcacccc gctgttagca attgacacct atcacccggc gcttgagttg      2160
     gccatcccgc taccacgaga ggaatcagcc gttcctgcgc taacatcacg ccttgactac      2220
     gcgcggacgg actttaacag gctcctgccg atgatcgcct cgttcgcgaa tgtcttcgat      2280
     tgttcccatt acgccactct tgacctcgct gtgaaagatt ttgagcggtt catgttgcaa      2340
     gccctgaatg aatgcacgcc ggtgaaacga cctaaacgag gccccccttg gggtgacaga      2400
     acgctgcgca ggctcaaaac ggctaaagct gccgcgtatc gcgattattt gttgcgtagg      2460
     tgtcccgctg cattgcgcaa ctataacact gcgcactctc tctatcggcg ctataacagg      2520
     ttccgctacc tggggcacgt acggcgtacg gttttgcgct gccgcggcaa ttcacgtgta      2580
     ctgtggaact tcgcaaacaa tcgtcggaaa tcctctggtt ttcctagctc cgtcagttac      2640
     aacgggcgca acggcaacaa tccgtctgct gtatgtgata tttttgcctc gcgctttgcc      2700
     gccaccttcc ttccagctgt aactgatgag aggcagatag ccgacgcatt atcaaacgta      2760
     ccggtggatg ctatggcccc aaacttgccg atcatcgatg agtattcagt ctcgaaagcg      2820
     attgacaggc tgaaatcttc gtttgctcca gggcctgacg ggatcccggc ttccacgctt      2880
     aagcgttgtg gcaccaccat cgcgcctatc ctggcctcga tttttcgcga ctcgctgcgt      2940
     tcgggcatct atcctgcctg ctggaaaact tcgtggcttg ttccagtgca caaaaagggg      3000
     gacaaatcaa atgcatgtaa ttaccgtggc attacatcgc tttgtgcctg cgctaaggtc      3060
     ttcgagctcc tggtgtacga acctctcctc gcagctgcct cgaactacat tagcacagct      3120
     caacatggat ttgtccctca gcgttcaacc accaccaacc tggttgagtt cgttagcctc      3180
     tgccacagga ccatcgatgc cggctcgcag atcgacgcag tctacacgga catcaaggct      3240
     gccttcgata gcgttccgca cgccttgctg ctcgcaaagc tcgaaacgct tggtctgcct      3300
     gtgcagctgc tggcctggat gcgctcctat cttactggtc gcacatactg cgtgaagatg      3360
     ggaccccata cgtcgcgccg tatcgatgct tcttctgggg tgccgcaggg gagtaatctt      3420
     ggaccgctgc tgtttgtcat tttcctgaat gacgtaacac ggttgctccc tcctgacggc      3480
     cacctactgt atgcagacga cgcgaagctg ttcctgccta tccgcgaccg gtcagaccaa      3540
     ctccgccttc aagccactct aagtgccttc cagtcatggt gctctttgaa tggtcttgaa      3600
     ttgtgcgtcg agaagtgtgt tgtcgttacg tttgcgagaa agcggtgccc cttagtgtat      3660
     gactatgcgt taaatggatc taccattggt cgcaaaagct gtgtcacgga tctaggagtg      3720
     ctccttgacg aaaagttgag cttccacgac cagctagagc acgttgtcac taagggtaac      3780
     caattgatcg gcttactaaa acaaatagca cgagacatca ctgacccgat ttgcatcaag      3840
     acgctatact gtgctttggt gcgaccagtg ttagaatacg cttctgtagt atggtggcct      3900
     acagctgctc gtcccctagc tcgtttagag tcgatccagc gcaaattcac gcggttcgct      3960
     ttgcgctcct ggagtgtcca acttgactat gagggacgct gtgcgttgct tggcatcgag      4020
     acgctgaagc agcggaactg caacgctcag aggctgtttg tcgcgggact tcttgacaat      4080
     cggatcgact cgcccgcgct tctttcgagg ctcaacatgt atgtcccgcc gagatcgctc      4140
     cgagctagat cgctacttga cgtggaggaa cgccgcactc gctttggctc ctctgatccg      4200
     tttattcgta tgtgccgtga gtttaatgtc atttgtgatc gtcatcaacc tgacatgtcg      4260
     cgcaccgcat tgttgaatag tattcgtgtc gtg                                   4293
//
ID   CR1-6_CQ    repbase;    DNA;    INV; 3709 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3709
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 8-8 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..738
FT                 /product="CR1-6_CQ_1p"
FT                 /translation="SKRQTQASTIPLFTNVTSSTLMPACILATIGRRPYIA
FT                 IYRAAATATRHQVGGRQTLLTRDARTPASWKTPTLPSQSRHRSAATYLVPD
FT                 IKVVPALCTVPEKGSSKRQTQASTIPLFTNVTSSTLMPACILATIGRRPYI
FT                 AIYRAAATATRHQVGGRRTLLTRDARTPASWKTPTLPSQSRHRSAATYLVP
FT                 DIKVVPALCTALENGSSKTRFQACIRVFPFSRRSLMLHNLPAPSNPPTHRS
FT                 PTLAR"
FT   CDS           198..3644
FT                 /product="CR1-6_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGSRERV
FT                 FQTPNAGKYNPAFHERDVFDPDARLHSSDDRTTPVHRDLPSCSYRNPSPSR
FT                 WPSDTADPGRTNPRIMEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGFRER
FT                 VFQNALPGMYSRFSVQSTLPDASQPSSSQQSSDAPLTHPRSLARVSSRIQQ
FT                 CHLYYQNAGGMNGNLDDYLHASSGECFDFIALTETWLKENTLSSQVFGPAY
FT                 EVFRCNRGPNNSRKVEGGGVLVAARRCFKPRRIDQDAWKAVEQVWVSLKLS
FT                 DRVLFLCVVYFPPDRIYDKDLYKIHLDSIASIAERTRPIDDIVVVGDFNLP
FT                 KLTWTPSRNGFLYPDPDRSQFHPCARDLLAGYNLATLQQINHIENEDGRRL
FT                 DLCFVSAQDFAPTLIVAPAPLAKIVHRHPALVVTIDGCHSSAVRDRPDTVC
FT                 YNFRGADYDEMSLALRNIDWDSVLDSVDVDAAVDTFSSILRDHIDHFVPKV
FT                 RKRNSTHLPWQTPELCNLKTQKRAAFKIFSRCGTLSLREYYLRMNSKYQRL
FT                 SRSCMASYQRKKQRELKANPKKFWKFVDENRKESGLPSSMRLANEEAESTA
FT                 EICRLFAKKFSSVFTNEHITDDEIQIAANSVPRCDRSLPMIDIDDDAVSAA
FT                 ITKLKHSSSPGPDGIPSTLLKRCSSALVSPLLHLFRLSLASGKFPCAWKQA
FT                 FMFPVHKKGDRRNIENYRGISALCAASKLFELVVIGPIFAHCRQELSSDQH
FT                 GFFPKRSTATNLLCFIEFVIDSFDNRSQTDAVYTDLSAAFDKINHSIAIAK
FT                 LEKLGFCGSLLTWFRSYLSGRSLRVKIEDTLSESFDATSGIGQGSHLGPLV
FT                 FLFYFNDANFTLRGPHLSYADDLKLFAKIDCLEDAEALQRELDKFADWCEA
FT                 NHMVLNPGKCQVITFSRKHSPILFNYHLGDTLVERVDHVKDLGVILDVKLT
FT                 FKQHVSFITAKASRQLGLVIRMTRHFTDIHCLKTLFCSLVRSSLEYCSSVW
FT                 TPHYNNAVYQLERIQRRFVRYALRLLPWRNPQQLPPYEDRCQLMHLDTLQL
FT                 RRDLARALTVSDVLTDRIDCPSLREKITLTAPARQLRHTPIMQIPFRRTNY
FT                 SANGAIVGLKRAFNKVSSVFDVSLSRDVLKSKFLSVLRRMF"
XX
SQ   Sequence 3709 BP; 855 A; 1118 C; 876 G; 860 T; 0 other;
     tccaaacgcc aaacgcaggc aagtacaatc ccgcttttca cgaacgtgac gtcttcgacc        60
     ctgatgcccg cctgcattct agcgacgatc ggacgacgcc cgtacatcgc gatctaccga       120
     gctgcagcta ccgcaacccg tcaccaagta ggtggccgtc agacactgct gacccgggac       180
     gcacgaaccc ccgcatcatg gaagaccccg actctcccgt cacagtcgcg ccaccgctct       240
     gctgcgacgt atctagttcc ggacatcaaa gtcgtcccgg ccctgtgtac ggttccagag       300
     aaagggtctt ccaaacgcca aacgcaggca agtacaatcc cgcttttcac gaacgtgacg       360
     tcttcgaccc tgatgcccgc ctgcattcta gcgacgatcg gacgacgccc gtacatcgcg       420
     atctaccgag ctgcagctac cgcaacccgt caccaagtag gtggccgtcg gacactgctg       480
     acccgggacg cacgaacccc cgcatcatgg aagaccccga ctctcccgtc acagtcgcgc       540
     caccgctctg ctgcgacgta tctagttccg gacatcaaag tcgtcccggc cctgtgtacg       600
     gctttagaga acgggtcttc caaaacgcgc ttccaggcat gtattcgcgt ttttccgttc       660
     agtcgacgct ccctgatgct tcacaacctt ccagctccca gcaatcctcc gacgcaccgc       720
     tcacccaccc tcgctcgtta gctagggttt cctcgaggat tcagcaatgc catctttatt       780
     accaaaatgc tggtggcatg aacggcaacc ttgatgacta ccttcacgcc agctcaggag       840
     aatgcttcga cttcatcgcc ctgacggaaa cttggctgaa agagaacacg ctttcgtcgc       900
     aggtctttgg accggcttac gaagttttcc gctgcaatcg tggaccaaac aacagcagga       960
     aagtggaagg aggaggagtc ctcgtcgcgg cacgccgctg tttcaagcca cgccggattg      1020
     accaagacgc ttggaaggca gtcgagcagg tctgggtgtc tctgaagttg tctgatcgtg      1080
     tccttttcct ctgtgtggta tacttccccc cggatcgcat ttacgacaag gacctgtata      1140
     agatccatct cgattcgata gcatctattg cagaacgcac gcgcccgatc gacgacatcg      1200
     ttgtcgtagg ggacttcaac ttgccgaaac tgacctggac accttcccgt aacggtttct      1260
     tgtacccgga tcctgatcgc tcacaattcc atccctgcgc gcgtgatctt ttggccggat      1320
     ataacctggc cactctgcag cagatcaacc atattgagaa cgaagacggt cgccgtctcg      1380
     atctttgctt tgtgagcgca caagatttcg ccccaacgct aatcgttgcc ccggccccgc      1440
     ttgctaagat cgtccatcgc caccccgcgc tcgttgtcac catcgacggt tgtcacagtt      1500
     ctgctgttcg agaccgaccg gacaccgtat gctacaactt ccgaggtgct gattacgatg      1560
     aaatgtctct ggcactgcgc aacatcgact gggatagtgt attggactct gttgacgtcg      1620
     acgccgcggt cgatacattc tcatcaatcc tgcgagatca catcgaccat ttcgttccta      1680
     aggtcaggaa gcgtaattct actcacctac cgtggcaaac gccggagctt tgcaacctca      1740
     aaacccagaa gcgagccgct ttcaagatct tctccaggtg tggaacactt tcccttcgtg      1800
     agtactacct gagaatgaac agcaaatacc agcgtctgag tcgcagttgt atggcaagct      1860
     accagcgcaa gaagcagcgt gagctgaagg ccaacccgaa gaagttttgg aaattcgtcg      1920
     acgagaaccg caaagaatcc gggctgcctt cgtccatgcg attggccaac gaggaagctg      1980
     agagcactgc agaaatctgc aggctgttcg ccaaaaagtt ttcgagtgtt tttacaaacg      2040
     aacatatcac cgacgacgag atccaaattg ctgccaacag cgttccccgt tgcgatcgat      2100
     ctcttcccat gattgacatc gatgacgacg ccgtatcagc tgcgataact aaactgaaac      2160
     attccagctc ccctggaccg gacggaatac cctcgacact gctgaagcga tgttcgtccg      2220
     cgctggtatc gcccctcttg cacctgttcc ggctatccct cgcctccgga aagttcccgt      2280
     gtgcatggaa gcaggcattc atgttccccg tgcataaaaa aggcgatcga aggaacatcg      2340
     agaactacag aggtatctct gccctctgtg ctgcctcgaa actgttcgag ttggtggtga      2400
     ttggtccaat ctttgcccat tgccgccagg aattatccag cgatcagcat ggattctttc      2460
     caaaacggtc cactgccacg aatctgctgt gcttcatcga gttcgttatc gatagcttcg      2520
     acaatcgctc tcaaactgac gccgtttata cagatttgtc ggcagctttc gacaagatta      2580
     accacagtat tgctatcgcc aaactcgaga agctcggatt ctgtggcagc ctgttgacat      2640
     ggttcaggtc gtatctgtcg ggacgctcgc tgcgggtgaa aatcgaggac acactctccg      2700
     aaagtttcga cgctacctct ggaatcggtc aaggcagcca cctcggtccg ttggtgttct      2760
     tgttctattt caacgacgcc aacttcaccc tgagaggacc ccatctttcc tacgcagacg      2820
     acctcaaact gttcgccaag atcgactgtc tcgaagatgc cgaagccctg caacgcgaac      2880
     tggataagtt cgctgattgg tgtgaggcga atcacatggt ccttaatccc ggaaaatgcc      2940
     aggtgataac gtttagccgg aagcactctc cgatactctt caactaccat cttggcgaca      3000
     cactagtgga aagagttgat cacgttaagg atctcggtgt catactggac gttaaactga      3060
     ccttcaagca acacgtgtcc ttcatcactg ccaaagcatc ccgtcagctc ggtctggtga      3120
     tccgtatgac acgccacttc accgacatcc actgcttgaa aacgctgttc tgctcgttgg      3180
     tccggtcctc gctcgaatat tgctcgtcgg tttggactcc gcactacaac aacgccgttt      3240
     atcagctaga gagaattcaa cgcaggtttg tccgatacgc cctgagactg ctgccctgga      3300
     gaaatcccca gcagctgccg ccatacgaag accgctgcca gctcatgcat ctcgacactc      3360
     tccagctgcg tcgtgacctg gcccgtgcgt tgacagtttc ggacgttctg accgacagga      3420
     tcgattgccc ctctctccga gaaaagatca ccctgactgc acctgcccgc cagctacgcc      3480
     acacgccaat catgcagatc cctttccgcc gtaccaatta cagcgccaac ggagccatcg      3540
     tcggactgaa gcgagccttc aataaagtgt cctctgtttt tgacgtcagt ttgtctcgcg      3600
     atgtgttaaa gtccaagttt ttatcagtgt taagacgaat gttctagttt tagtcttagt      3660
     tttaagttca tttgggcaat aagtgcctgt tgagaaataa acaaacaaa                  3709
//
ID   CR1-6_DEl   repbase;    DNA;    INV; 4717 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4717
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4602-4602 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 4717 BP; 1349 A; 1034 C; 865 G; 1467 T; 2 other;
     cagtcatcag ccagctttca ttgtgatcgg ttgtttttca ctatgtctct ttgcaccgaa        60
     tgcaattccg aggttactgc tacgcagcta cgtagcttcg aggcggtccg ttgttcgtcg       120
     gtctgtcgcc gcacatttca catagcctgt gttgatttgc ccgaagaggc aattaaatta       180
     ctaattaata tgccgaacct tctctggcaa tgcgacggtt gtgttgtgag taacgattct       240
     cactctaaaa tcggagaact aatggaagag attcgggagc taagaaatct atacatggac       300
     ttaaattcaa agtttaataa tgcttttccc gttcctgcta ttggcaacaa taatgtcagt       360
     cagcgcaaaa aattggtgaa acctgcagca ccaactcctt ctacttccca tcaagcgaac       420
     caggcttcat cccatcatgc taagcaagct gttctggtat ccaccgctcc agcagctgcc       480
     cccaaaagga atcacaaaaa taatcatgga acaagggacg cattgttggt ttagccccta       540
     gttgtgacca attcgaagtt ctaccaagca acaaatttct gcatattggc aaatttgcag       600
     taagcaccaa accagaggcg ttgtgcgaat ttgttgctaa taagttgtgc attaaaactg       660
     accgtataat ttgcaaacct ttaattaaaa aagatgcaga tatatcagca ttgaagttca       720
     tcaattttaa gctgggagtg cctgaaaaat actatcaatc tgtgttttgc gatgaatttt       780
     ggccagaagc agtaaaagtc agcagattca tccacaggaa cagaccaatt gttgaggaaa       840
     caatttttga gttgcacact gatcatactc ctatttcatc agcacccaat tcagatccaa       900
     aaaaccccca ggaataggcg ccactggcgt catcaccgtt gcggggcatt tcggcgatct       960
     tcttcctcat ctactgggtt tgtgctcgca acaacaaagg ctgggcttgc ctattgcctt      1020
     tattctccca aattttaaat tctttgcgct ctatccaccg acaaatatcc aacaacacca      1080
     gctggagctc tcgttgttcg ttttcttcga ccctcgccaa acatcgggtt ccattcctat      1140
     tacggattgc gtgctcttcc gagacgtgct ctattatttc catacgctca cgacagcccc      1200
     acaaaattct cggcttcagc tttcaacgtc cgctttgagc gaggctctcc taagtcatag      1260
     tcttaatgtc aatgctcttt gtccgctctc cggattcgag ctctctgcaa tgatgctaca      1320
     actacaacac tatctggaat ttttaccgcc cgcttgtata gctgttctgg atttgatgag      1380
     actctgaaag tgcgtttggg agttgagctc tctgctaaac tttctgttca gctgatggat      1440
     gaacaacaac atcgcccgct tttatcgcta cgttctctta aagttgctct cttggaagtg      1500
     gccgctttca gtttagagcc atcgctctta aattctggct tctctttttt cgagaaatct      1560
     aatatatttt gcgaatgtag cgcacttaat tctgaagata agcaatggat caaagttacg      1620
     tcgttactaa gggcgatcag cggaatwaaa acattaggat cggtaggtgc tgttactccg      1680
     catgcactgg aatgcattag catgaacaac acgaatcagc tggtggcgac cccgaggatt      1740
     tacaatcatt ccattttaag cacatcccca cttaaaatct atttccaaaa tatctctgga      1800
     atgcggacaa aagcggaaca agtatatctt gctacatccc aaggcaactt tgatgtcata      1860
     gtcctagttg aaacctggct caacatgaac ttttacacta acgagtactt cgatttcaac      1920
     ttgtatcaag tctatcgcaa ggacagagat ggtacaaaaa cacaatgcgc tagaggagga      1980
     ggcgttaatt gtggctgttc gtcgcagctt gagatgttta tctattggac ctcttctcaa      2040
     tgaagacacc cttctggatc aagtggctgt ttctgttatt ggaccagtga atacgctact      2100
     tattgtggcg tcttatatac cgccgaagag tacctattct ctttacaagg cccatctgga      2160
     gaacgtgacc aatatctatg ataatctact ggaccaacag catctctgcg ttattgatga      2220
     ctttaacctg tcatcccttg cttgggcgag gaaccctgac gctcattcct tactgccaag      2280
     taacttgcat cagccacatg aggttctttt catcgacgat ctattcagta tggcttaata      2340
     caagttaata atgtattcaa tgatttatat aagctctaag atttagtatt tcttagtccc      2400
     gatattaaat ttttccttag ctgaatgtaa tttacctatc agcaactgcg atgttcatca      2460
     taggccattg ctactaatma ttagactttt atagttttgc gccttcagcg gataattttt      2520
     ccaagttcat tttcactgaa agctgccttc gttctatcag aagcgatatt tcctcagttg      2580
     actggcaatc aattctttcg catgttagtt tgaagttgtg ttatgatcac tttttagaag      2640
     ttcttttaaa cataattaaa aataatgcac aagaaagggt gcaaaattca ttcaagctgc      2700
     cttggtatac aaaaggccta aaaaagctga aaaatcttcg caataagttt tataaaaaat      2760
     tcttagtatc gcgtgatccg agtgattgga ataggcactt gcaacacaaa cgtgaatttg      2820
     agtttttaaa taaatttctt taccatcagt acatagcaga cgtcgagagc gggctgaaac      2880
     tcaaccccaa atctttttgg aggtttgtca gatccaaaaa aaacgtttct tcagttccct      2940
     ctgctatgta ccttggaaat ttaacttctc attctgatat agaaacttca aatctgtttg      3000
     cttctttttt taaagctaat tttgaacgag cagaagattg gcatgattct caaacccttg      3060
     attcaattac aagattggta aacataggtt ctttgactgt tgaagacgag aatattcact      3120
     cggctattca agactttgac gattcttaca accctgattg cgatgggatt cctgcttatg      3180
     tcctcaaatg ttgcattgaa gagctatgtg tacccttgaa aattattttt aatctatcac      3240
     ttttgagtgg acactttgct gatagatgga aggttgcata cgtgactcca attctaaaat      3300
     ccgggcccaa gaataacatt gccaattatc gccctattgc taaaataagt aatatttcta      3360
     agctttttga gcgtattgtt gcctacaaac tttcgtttct tctaaaaaga tacataagca      3420
     actgtcaaca tggttttgta tcaggtcggt caaccacgac aaacctagca gttttcagca      3480
     actattgcat tcaagccttt aataagcact gccaagttga taccgtatac acggatttcg      3540
     ctaaagcttt tgataaagtt tgtcactgtg ccttgttggc aaaacttgca catttgggca      3600
     tacactcagc tatgttaaac tggataagat cttatctaaa ccatcgtagc tacaaagtga      3660
     acattaatgg aacattttcg gaaccttatt tggcaacatc tggccttccg caggggagtg      3720
     ctttgggacc cctgcttttc attattttta taaatgatgt acaaatcaat atctcttcag      3780
     aatgtctcct ctatgcagac gatttaaaaa tttttagaga agtcgaaact ccagcagact      3840
     cactatcact gcagttagac ttagatttct tgagttcatg gtgccgccga aatttacttc      3900
     cgctaaacat taataaatgc ttttatgtta gctacagtaa atgcgtatac aaccttataa      3960
     ccacatacag tattgcaggg cagcccttaa atgttcaaca agaatgctta gatctgggtg      4020
     taatgtttga ttccaaattt aatttctcag cacactttga ttatatcatg cctaaagcgt      4080
     acgctatgtt tgggtttgta aagcggaact cagcgctttt catggatccc tatacgaggc      4140
     ttgcgctcta ttcaacattt gtgcgctcta aaatagagta cgcggctttt atctggaatc      4200
     cctcagccaa tatccacata aatagaatag aaaggctaca gaaaaacttt ctaaaattcg      4260
     ctctcttacc cttaagaatt tctgaaccct tcccccctta tcagcagcag tgtctcctcg      4320
     ttcaccttcc cacacttgcc aatcgcagaa caatcatctc catctgtttc atcgccgacc      4380
     tggtggccgg aatcattgac tgtccagaac ttctttcaaa agtaggcttt aaatgctcct      4440
     gctaggcacc tccgagattt tgctcccttt attgttgagt tacgcaggac taattactcc      4500
     caaaacgagc cactttatag agccttgtgt gagtgcaata aacttccaac taacatgcga      4560
     cttaattatt tttctagcaa gtctgatctt aaacataaat tgatcgatta cttttttcaa      4620
     tgttagtgcg taagaatatt gaataaataa taatgttaaa tatataagta gccagttaag      4680
     gaatgaatac cgttggcgaa ataaataaat aaataaa                               4717
//
ID   CR1-6_DSuz  repbase;    DNA;    INV; 3029 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   10-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3029
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 593-593 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 3029 BP; 856 A; 682 C; 543 G; 948 T; 0 other;
     ctctgcagaa acacaatctg ccgcaccaaa acccctatca gtggttctgc caaaaaaaca        60
     aatatttgtt tctcggcttt cccctggcca aacggcctcc gaggtgttgg actatataca       120
     acataaaaca aaggccaaaa atattaccgt ggaaaaattt aattttacct atgccaggga       180
     cacctcgtct tttaagatgt ctgttccaaa caaggcggct gcagcaaaag aaaaagacct       240
     gtagaaacta gacccagccg tatgtcgcac cttcatgttc taccgtagca ccttcttcaa       300
     aaaataaaaa ctagcttaac tctttcctat cagaatacca gaggcttgcg tagcaagcta       360
     actgaattgt attcggatag tctttctttt gcatctcaca ctattgtgtt cactgagacc       420
     tggttaaaac cggatatcct aaactccgag atttttcctg gtagccattt ataggcatga       480
     tcgaccgtcc aggcgaggag gtggagtcct aattgccgtg gactccacct caagcgagag       540
     atgttgagga attcaatgga attcgtatgt gtaaggcgtc tggtagtctc ctgctcgtac       600
     atttcgcctg catctgagtt cccggagtat ttaaatcatc ttttcgctat acaggcagtc       660
     tcaaaaagct gtccaataga gaccatcttg tagttctggg agactttaat atacctggaa       720
     ttacgtggta gaaactctct cagctcataa tgattttact gaaggtttgc ttgacatatc       780
     tttatctcaa gttaactaca ttaaaattcc tcaggcccct gcattgcgtg tcgaggtctc       840
     aatcgacact ggtgctgtct agaagaaaaa tcagagaagt caactaagcg attacattgg       900
     ttccgcaagg ctgactttca gcataaatct ttatatatca ggctttgatt ggtccgatct       960
     ctactcatcc caaaatatgg atgatgctat aaatattttc tttagttcag taaattcccg      1020
     tgctcgtcgt tccaacaagc caccttggtt cagtaaagag ctgacacacc taagaaataa      1080
     gaagtccaga ctttatagga aattcaaaga taccggttct caatctattt attctagata      1140
     cttaagtgct cggtctagtt ttaccgtgct aaactctctg tgttacaaaa actatttaaa      1200
     tcgttgtgaa gttcaattcc tcagaatccg aaaaagtttt ataattttgt taacactaag      1260
     cgtaaatcca ccaatccctt cctcgttatc ttttgaaaat attaccgcaa caactgatca      1320
     ggcaatagcc gattttttgc cattattttc aaacgacata ttctacttta cctcattcct      1380
     cacaacctta ttcttacact gtatccaagt cgaatttaat gttctgtccc accttaaatg      1440
     aaagctctct gcttgttgat cttcaacgtg tcaagcccgt tattcgcctg gtcccgatgg      1500
     aattcctggc tgcgtgctta gatattgcgc ggaggcctta tgcaagcccc ttctcaaatt      1560
     gtttacctta tctttagaat cttcacaatt tcccaatatg tggaaggaat cgtttgtaat      1620
     tcctctccac aagaagggta gcaaagtgga agcaaacaat tatagaggta tctctaaatt      1680
     gtcagcgatc ccaaagctct ttgaaaatat tattactccc catttgcagc acctctgtgg      1740
     cctccgtgtc aacacgggtt tatgaaacgt agatcaacaa ccactaacct tttggaactt      1800
     acatcatttg tgataaaggg atttaaaaaa catcttcaaa cagacgtcat ttacactgac      1860
     tttagtaaag catttgactc tgttaatcag ggttcttctt gttagaagat tgcagaacac      1920
     aaagagtact tttaaaaatt ctctctcttg tatactccac gttacctccg gtgtcccaca      1980
     agggagccac ctggggccgc tactttttac tttatttata aatgaccttc cctcagttat      2040
     aactcattct cgtgtactaa tgtacgcaga tgatgttaaa ttatgcctgc agtacaagga      2100
     tacttcttgc cagtccaact tacaatccga tttgaataat tttcaaacat ggtgctctga      2160
     caatttactg gatttaaatg gctctaagtg taaggtaatg actttttgtc gagtcaatcc      2220
     tcaatatgcg acatacacgc tgagtgaggg ctcattggat agaataactc tagtaaacga      2280
     tcttggcgtt cttttggacc caagactaaa atttgctgat cacatttcgt ccatggtgaa      2340
     taaagctagg ggtgcgcttg gctttattaa aaggtggtca aaggaatttg atgatcctta      2400
     tattacaaag accttattta tttcgcttgt ccgcccgata cttgagtatg gatctcccgt      2460
     ctggagtccc caatacggaa ttcatgttga tcgtatcgaa tctgtacaga agaacttttt      2520
     gctatttgct ttagaggcgc ctgggatgca aacctgattt taccttctta ttctagtaga      2580
     ttactcctaa ttaacttacc ctccctagcc aaccgcagaa cgatgcttgg aacagtcttt      2640
     atttataacc ttattcgagg cgaaattgat agccccgact tggttagcca gctaaacttt      2700
     tctgttccat gcagattaac aagaaattac attcccctaa ttttaaatca ttgtagatct      2760
     aactatgact tgcatgaacc tttcagagta ttatgttctg actacaatag actttatcct      2820
     attatctcaa aatctgactc tctgcctctc ctaagacgat taatattaaa ttttctagca      2880
     cagatttaga tcctactttt tttcctcgaa ctatatcttt atttttctac gcgtctatca      2940
     tctcgcgaat tcgtgccgta cgacacacgg cagcgcccct cggtcggttg ggcgggaggt      3000
     gtggccgtgg gatcccgcgc gaaaaaaaa                                        3029
//
ID   CR1-6_DT    repbase;    DNA;    INV; 4027 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4027
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1697-1697 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4027 BP; 1032 A; 984 C; 761 G; 1243 T; 7 other;
     ttgcgtttta accgctagag ttgttgttgc ccgcgcttta gctctcctat mgctctcgtg        60
     cattacgctt atcgcttaac agtgtgtttt gttgttggtg taattactct ccggtcatct       120
     gctgctgaac aatcacacgc acttgttttg atcggttctt cgccgcgatt attaaaccaa       180
     tttatatatt aaaacaaacg aaatgagttc atgctgtgcc gcttcctgct cttatggcaa       240
     caaaataact tcccgtcaaa cttcggtttg ctgctggatt tgtgacaact tggcamatcc       300
     tatctgcgtg gwgctagggc ggacaagtgg cccaatwgtg gacaagctta ggtcacgggt       360
     tggccttaat tggacttgtc caaactgcag gcatattgag gttgatatga aaacattcat       420
     gcgtcaaacc cacctggagt tccaagccct gtcgactggg ttcctcgagc ttcaagataa       480
     attccgctct gctgaatcac actttaagaa cctgaaaatg ctaagtgtcg cccaaactta       540
     ctctttgcct aataatacct taaatgttcc acagtcttcc gcctcaatgc aactgagccc       600
     tattacaaga gcacttatgg acttcaatca agcctccccc actcttacca cttcctccct       660
     gccggatggt ggtgcagctg atgaagacca catatcttca gatcactcga caactgtacc       720
     aacagttgcc ccggcgacgg ccctggtttc tcttcctctg cattcaccta ctggactgca       780
     tcttggctct gttgccaacg aagaccaggc atctacgtcg caagccgcgg tcgtctgcta       840
     tttccgataa tatgccgcga cagccacaca ttcggcgcct gtaagaatca actgcggaaa       900
     tcatatctgt gtcgcgccaa ggatatctgc gccaatagtt ggcgttgcac ccaaaaggtt       960
     catttcgtcc cccgtctgag tcctggggct tctgagaacg acgttaagcc cacctaagta      1020
     gcaaacgaat atttccggca ccgaaattac tgtctcgaag ttcagtttta agcaaagacg      1080
     cgaaatatcg tcgtttaaga ttgggatttc tgacactcta attgataaag tccttgatat      1140
     agcaatctgg ccggagcatg ccgtcgtcac gagtatgtta acaaatcaaa ttcccgagtt      1200
     cgtgggcctc aaaccccttc agccaggttc caaaaactaa ttgagtcatt ctccctacac      1260
     tatcagaatg tacgtagttt actgggtaaa ctcagtaagt gcacgtcaat agtgtctcct      1320
     ttggcgccaa tgtgattgcc ttcactgaaa cgtggcttat tcctctgtgt ctgactgtgc      1380
     atctgcgggc gagtcatctg ttgttctatt gcgtcatcat ctggtttcag accgcgcccg      1440
     ctcgtattaa cgtcacgctg cccgcacact ccaccctcgg caataacgac catcttattg      1500
     ttatgggcga ctttaacctg ccttccatat cmtggatgtc atcacctgac tcaaatgttc      1560
     ttgttccctc tttacctcac gagttggtac acggcctwat cgacctctca ttgggacaat      1620
     tgaactctat tcagaactcc tcgaataaaa tcttggacct tatttttgcg tctgagttcg      1680
     ccaatgccta cgtttcaaga attgacccgc tcgttagccc tgaagaaatt atcaccctac      1740
     acttgaggtc attctggaag cctcggctcc tttattacca ggtcctgaaa tcgaaccagc      1800
     atcttttcgc tgctttcgaa aggccaactt tactggtatg aatctttatt tatccgaagt      1860
     agattggtct tttatggact taaacgaaga acctcttaac attgttaaac agttctacgg      1920
     cattctcggc acggttttcg atttgtatgt gccttcattc ccctcacctg atgtttctta      1980
     taagcctcct tggttcactc gtagactctc ttacttaaaa aactgcaagt ccagactttt      2040
     taagaaattt aagaggacag ggatgcaagt agactattcg agatacctta ctgcgcgatc      2100
     tgaattcata actcacaatt cccaatgcta caagaattac cttgatcgtt gcagaamtga      2160
     gtttcatgat aaccccaaac agttctatgc atttgttaac tccaaacgca agtctcaaca      2220
     atttccatgc tgccttcatc tggattccgt ttctgctttt aatgatgccg atattgccaa      2280
     tttatttgca aattttttcc agtccacgta ttcatccaca agctacgata atacctcagc      2340
     gtatcccttt tcacttccgc actctaatgg tatgtttatg cctataatca gcgtagatga      2400
     tgtttttcaa aatctgcaaa gaatcaagtc atccttctct tctggtcccg atcttgtacc      2460
     aagctgcgtt ttaaaatatt gtgctagtgc attgtgtggg ccactgtcaa aactatttca      2520
     gttatccctg cagcactcat tttttccaga agtttggaag gaatctttta taattccgct      2580
     tcataaaaag ggaagtaaat cggacattaa taactaccga gggattgcaa aactcagtgc      2640
     tattcccaaa ctcttcgaac agttaattac tgctcagctt cagcaccagt gtagctcaat      2700
     aatgtcccca acacagcacg gctttatgaa acgtagatca acgtcaacca accttctaga      2760
     gtttactaca gttattagga atgcgtttaa aacaaacacc caaactgatg taatctttac      2820
     agacttcagt aaggctttcg attcggtgaa ccatcagtta ctgttaaaaa aacttacgct      2880
     tttgggattc ccgatctcgt tgacgaagtg gatttcttca tacttattga accggacgca      2940
     gagagtatta tttaaaaatt cgatctcaaa ccttgtccat gtgacttctg gcgttcctca      3000
     agggagtcac cttggaccac ttctgtttgg aatctttata aatgacttgc ctcaagtaat      3060
     tctctcttcc cacgtgatga tgtacgccga tgacgtaaaa ctttgcatgc ccttaacaaa      3120
     cgttgattct cacgtactcc tgcaagcgga cttatgcaat ctgcaatcat ggtgcctcca      3180
     gaacctgctg ttcttaaata attctaaatg tagcttcatg tctttttatc ggaagaggct      3240
     tttcctcttt aattattcca tcgggatgaa cgatcttgaa cgcattaatt ccgtaacaga      3300
     tcttggagtt ttatttagcc acaacctaaa ctttaccaat cacatcggca tcattgtcag      3360
     taaagcaaaa ggggtttttg cgtttgtaaa gcgctggtct aaagaatttg aggatcccta      3420
     caccacaaag cacctttaca tttctcttgt gcgacctatt cttgaatact gctcgtgcgt      3480
     atggtcacct caatatgcta aatatcagga cctaatcgaa tcggtacaga aacagttcct      3540
     tttgtttgct ttacgtgggt taaactggga accacaacgt cacctgccat cctacgtcga      3600
     tagactgcgt cttctgaacc tgccctcgct aatggatcgt cggacctgcc agggagtgat      3660
     gttcctccac aagttgatca ctggacttat aaattctagc ttcttactcg gccaaatacg      3720
     gttttcgatc cccgtaagag catcccgcta ctttcggcct attgctcttg aaatttgcaa      3780
     atcgaatttt gaagcgcacg atccttttcg agttttgtgt actcaatata atgaattgta      3840
     ttttttgttg tttgttgaat gttccgtgga ctttaatgta agaaatattt ttaatcacct      3900
     atccttgcct ctgcccactt gatgtgagtc ggagcatatc gttaaaaaaa actcctttac      3960
     tcgggcggag gtaggagtta ggtttatatt ggcagatatt tgctaatttt tggaaataaa      4020
     taaataa                                                                4027
//
ID   CR1-6_Hmel  repbase;    DNA;    INV; 2499 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2499
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           824..2077
FT                 /product="CR1-6_Hmel_1p"
FT                 /translation="VXTTCFLLTNMVLXSGSSTEDALSNLVDEVAQNINNR
FT                 KKTLAIFLDISKAFDTVSLPILYSKLENIGIRGIVLDLFKSYLSDRTQAVN
FT                 IXNNISNEANVSFGVPQGSVLGPTLFLIYANQLCNLSVPNTKIISYADDTA
FT                 LLVYGNSWAETREHGEKALAIVISWLSCHRLTLNVDKTQFITLGPKRSLPP
FT                 ISFSIIAHRCHPELSPICHCSNINRSSTIKYLXVIIDENLTWRNHILALSA
FT                 RIRKIIYIFKQLRSGASIEIAKMVYFALVQSILTYCISAWGGAPKSILLPL
FT                 EKAQRCILKVMTSKPTRFPTAELYDICKVLTVRQLFVLRSILRXXRLTPFX
FT                 PQNNCGKRRVDKVCSIESRRTVSANRLFYYLSPILYNKINKELKIYPLTLY
FT                 QCKTKLTDWLLNLDYDQTENLLIV"
XX
SQ   Sequence 2499 BP; 817 A; 482 C; 382 G; 788 T; 30 other;
     ggtgcagcag aaaaattggt attaacaata acctctgcta tacaaaaata cacccgcayy        60
     atctcttgca gaaaaagaat tataaaacca tggatcactc ctggattgct ccgatgtata       120
     agaaatcgcg ataaactata taaaaatacg aaaaagaatc ccgatgatcc aatatctaaa       180
     atcagttatg ttcgttataa aaatttctgt aacaatctgt taaaaaaaat taaagctaat       240
     tatgaaaata tcgagttcca gaaagctagc aaaaatacaa aaaggacatg gaccgttgtt       300
     aaaacaatta taaataacac taaagagaat actaaggtct caagcaatct cttgcaatta       360
     ggtaacgatc caatctcagc agtcaataat gtaaacgatt actttgctaa tatagggaaa       420
     aaacttgctt ctgccgatca tttcaatagt gctcctcaga tgtacctacc gtacactgcc       480
     gcccaggtaa tacctaattc aatggttatt aatgaaactg ataattcaga aattagatcc       540
     atmattctya atctkaaaag ccattgcgcg gtagggtggg ayggtatatc gtcctctgtc       600
     cttaaagctt cggtaaatgt acttacccca cctatttctt ggatttgtaa cctctgctta       660
     tcccaggggg tatttcccaa aatctttaaa aaggcwsymr ttcacccaat ttataaaaac       720
     ggatgtaagg ccagcttcag taactacaga cccatatctg ttctaagtgc cctatctaag       780
     rtcttggaaa agcttattaa taatagactt gtctcctact taggtakata caacttgctt       840
     tctcctaacc aatatggttt tagdaagtgg tagctcaacc gaggatgcgc tctcgaattt       900
     agttgatgag gttgcccaaa atatcaataa tagaaaaaag actcttgcca tatttctgga       960
     catttctaag gcctttgaca cggtctcact accgatcctt tacagcaaat tggaaaatat      1020
     tggtattaga ggaattgtct tggatctctt caaaagttat ttatctgaca gaacacaagc      1080
     agtaaacaty wataataata ttagcaatga agcaaacgtc tcgtttggag tacctcaggg      1140
     tagcgtattg ggaccaactc tatttttaat ctacgctaat caactttgca acctttctgt      1200
     tccaaatacc aaaattattt cttatgcaga tgataccgct ttgcttgtgt acggtaacag      1260
     ttgggccgag acacgcgagc atggtgagaa agctttagcc atcgtaataa gctggttgtc      1320
     ctgtcacagg ctaacattaa atgtggataa aacccaattt ataactctag gcccgaaacg      1380
     ctcgttgcca cccatttctt tttctataat tgctcataga tgccaccccg aattaagtcc      1440
     aatctgccat tgtagtaata ttaatagatc ttccactata aaataccttd gagttattat      1500
     agatgagaat ctcacctgga ggaatcatat actagcttta agtgcccgta ttcgaaaaat      1560
     aatatacatt ttcaaacaat taagatctgg agctagtata gaaattgcta agatggttta      1620
     tttcgcactt gtccaatcga ttcttactta ctgcatatcg gcatggggtg gtgcacctaa      1680
     atcaatctta ctcccactag aaaaagcaca gagatgtata cttaaggtta tgacatctaa      1740
     acctacccgt tttccaactg ccgaactata tgacatttgt aaagttttaa ctgtccgtca      1800
     attattcgtt ctgcgctcta ttttacggrr gmataggctc accccattck ahccgcagaa      1860
     caattgcggv aaacgaagag ttgataaggt ttgctcaata gagtcacgac gcactgtctc      1920
     tgcaaatcgc ctattttatt acttaagccc catattatat aataaaataa ataaagaatt      1980
     aaaaatatat cccctaacgt tgtatcaatg taaaactaaa ttgactgact ggttattaaa      2040
     cttagattat gatcagacag agaacctatt gatcgtatag cttgataccg atgaagccat      2100
     catacgtacg cacacacaca tccacacaca yrtccacaca crcayacaca catccacaca      2160
     cgcaaactca cacaccacac ataaacatca tgcacatcga tcactctaat aatgttttgt      2220
     ttattgtata cctttttatt twattttttc ttttaattaa ttahttttta atactattat      2280
     tgcatgcttt tttaattatt atttttatca tttgttatat tttaaagttt ttcttttttt      2340
     ttdgtaattg aactcatttt gatcatacta atttatgaat ggatgcttgt gaggcgggcg      2400
     ttaataactg ccacacagtt tataactaat gcggttatta tcgttataaa ttgttttttt      2460
     gtaattttgt ttatgaataa attatattat tattattat                             2499
//
ID   CR1-6_HMM   repbase;    DNA;    INV; 2467 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2467
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2783-2783 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2292
FT                 /product="CR1-6_HMM_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="NRILDLCLTSVYNTESFSAPITLVPPDVLHPPYYILI
FT                 PIDKNSSKPTPKSPCFRYCFKNADYEQINSDILEINWCKLFQNKSVEESVD
FT                 IFYEYIFHIIRKRVPFKRANNFKFPVWFTPALIHIFKNKKKAWIKWKVYKN
FT                 QSDYSIFSMYRDRFKTESQICYNKYINSVEDSILKNIKYFWTYIKNRQNQS
FT                 DIPNSVHYNGTKADTPESICSLFSSFFQSVFQPSDVCDSFCMEDIDDIDRY
FT                 TSNDTVISDIHLSESNVFKELKSLDTTKSAGLDNIPPIFIKTSAMSICKPL
FT                 TMLFNKCLKEGICPVLWKSARITPIHKGGLKKDVVNYRPISILSTLSKVLE
FT                 RLVRNDVYPLLHKAILPEQHGFVRKRSTITNLFIYTSKLFENIDANAQMDS
FT                 IYTDFLKAFDRVDHRILLEKLAFNGIRGNLWRWFKSYVTNRTQKVVINGYE
FT                 SGTVIITSGVPQGSILGPMLFILFINDIHMCFQHCDFLLYADDLKIFRTIT
FT                 NFNDHLDFQEDLNRFNNYCIANKLQLSFDKCKIITFTRKQASSTYNYSIGG
FT                 HNLSRVQTIRDLGVTLDNKLTLDAHVDNICSKAYKMYGFVMRASNDFVRPS
FT                 TYLHLYKTLIRSQLEHGVCIWDPLYNKYSDCLERVQKKFLRCMHYKSCRNY
FT                 KPYYQLLQKYNLLELKSRRIQMQAMFLYDICHNRYDCSDIVNSISYGVPTR
FT                 SYRRACRSTHHLFATRTTRTNAGLRAPIQHTLNSYNSNFSHIDIFANTVSV
FT                 YKRLLFEELYDDT"
XX
SQ   Sequence 2467 BP; 836 A; 439 C; 395 G; 797 T; 0 other;
     aatagaatac ttgacttatg cctaactagc gtatataata ctgagtcatt ttcggcgcca        60
     atcactctgg ttccacctga cgttttgcat cctccctatt atattttaat acctattgat       120
     aaaaactcat ccaaacctac accgaaaagt ccatgtttta gatactgttt taagaatgcc       180
     gattatgagc aaattaatag cgacattttg gaaattaatt ggtgtaaatt gtttcaaaat       240
     aaatctgttg aagaaagtgt tgacatcttc tatgaatata ttttccatat tatacggaaa       300
     cgcgttcctt ttaaaagagc caacaatttt aaatttcctg tatggtttac tccagcacta       360
     atacacatat ttaagaataa aaagaaagct tggattaaat ggaaagtata taaaaaccaa       420
     tccgattatt ctatattttc aatgtatcgt gatagattca agacagaatc acaaatttgt       480
     tacaataaat atatcaactc tgtggaagac agtattctca aaaatattaa atacttttgg       540
     acttatataa aaaatcgtca aaatcaatca gatataccaa acagtgtcca ttataacgga       600
     acaaaagcag atactcccga aagtatttgt agtctgtttt cttctttttt tcaatctgtt       660
     ttccaacctt ctgacgtatg tgactccttc tgtatggaag atatagatga catagacaga       720
     tacactagta acgacactgt tattagtgat atacatctat cggaatcaaa tgtctttaag       780
     gaactaaagt ctctagatac tactaaaagc gcaggtcttg acaatattcc tcctattttt       840
     attaaaactt ctgctatgtc tatatgtaaa cctttgacca tgttgtttaa taaatgccta       900
     aaagagggta tatgcccagt tttatggaaa tcagctagaa tcacaccaat acataaagga       960
     ggcttaaaaa aagatgtagt taattatcga ccaatttcaa tcctatcaac actatccaag      1020
     gttctagaga gactggtgcg taatgacgtc tatccactgt tgcataaagc tattcttcca      1080
     gagcaacatg gtttcgttcg taaacgatct actatcacta atctgtttat ttatacttct      1140
     aaactgtttg aaaatattga tgctaatgct caaatggata gtatctacac agattttctg      1200
     aaggcgttcg atagagtaga tcataggata ctcttagaaa aactggcttt caacggtatt      1260
     cgtggcaatc tttggaggtg gtttaaatct tacgtaacaa acagaacaca aaaggttgtc      1320
     attaatggat atgagtcagg tacggttatt ataacgtctg gggtgcccca gggatcgatc      1380
     cttggtccga tgttattcat cctattcatt aacgacatcc atatgtgctt ccagcattgt      1440
     gattttttac tatacgcaga tgacctaaaa attttccgca caataactaa ttttaatgac      1500
     catctggatt ttcaggagga cctgaataga tttaataatt actgcattgc taacaaacta      1560
     cagctaagtt ttgacaagtg taaaattatt acctttacta gaaaacaagc gtctagtacc      1620
     tataattatt ccataggtgg ccataacctt agtagagttc aaaccatccg tgaccttgga      1680
     gtcacattag ataataagct gacactggat gcacatgttg ataacatatg tagtaaggcc      1740
     tacaagatgt atgggtttgt tatgagagct agtaatgact tcgtccgtcc aagcacatac      1800
     ctacatctct ataaaacctt gatccgttca caattggagc atggtgtgtg tatttgggat      1860
     ccgttatata acaaatactc agactgcctg gagagagtgc aaaagaagtt cttgcgttgc      1920
     atgcactata aatcctgtcg taattataaa ccatactatc aattactgca gaaatataat      1980
     cttttagagt taaagtctag gagaatacaa atgcaagcta tgtttttata tgacatttgc      2040
     cataacagat acgattgctc tgatattgtg aatagtataa gctatggagt gcctactaga      2100
     tcatataggc gggcctgtcg ttccacccat catctttttg ccacacgaac gactcgtact      2160
     aatgcaggcc tacgtgcacc tattcagcac acattaaatt cctacaacag caactttagc      2220
     catatcgaca tctttgcaaa tactgtaagc gtttacaaaa gactgctatt tgaggaactg      2280
     tatgatgaca cttaataaac tacagaatta taatgtacaa tcgactctca acttttaaaa      2340
     cttatttatt atatctaggg taaacgatgt tgatttcaca attattatat gtataaatta      2400
     tattatatat aaattatgtt attgtgatat tgttagttta cctcaataaa tcaaaaaaaa      2460
     aaaaaaa                                                                2467
//
ID   CR1-6_NVi   repbase;    DNA;    INV; 3601 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.05, Created)
DT   08-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-6_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3601
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 933-933 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..241,226..570,543..2873,2866..3441)
FT                 /product="CR1-6_NVi_1p"
FT                 /translation="TYPREGCTGPRDGLSKQEELTAGYSGFSNAWTLTRII
FT                 MSHRAWTVELFLLNCTIGPIDPSTSLCTTFLSKATTSRCHYWSVPLLVLML
FT                 MKSLDAVFPGPQETALFLVRFGSSDDASRVLKNRKLLPSSVEATADHTAYQ
FT                 RDLYRKLKLKASLHNTSHPDSLKKVVYVKGTPTLVDLRRTSTAPLSEKPSK
FT                 NLQASETFKKLAGILKPVNKLSLYYQNAYSMYGKLHLFKAKLFQLSILPDI
FT                 VVITETWLQDCVLSSELGMQQFDVFRCDRDLSSHGVQRGGGVLIGVKKFLQ
FT                 AELVHVDNVIEQLIIRISLPSHKLIVAASYLRPDSSVQVFSSHVSNLEDAN
FT                 IKFPDHRMVLLGDFNLHHITWSSDTSAYSPMAYLSPALRSAADIISGYSTS
FT                 MDLVQHFKHHPKKGYSLDLLFAQKDFISPMDFNEDILPCDDHHVPGMFSCN
FT                 ISVASSASCNLKFCKRKFYSADFEAIRARLSEEDWATVLYSFSDDPDSGIA
FT                 RFYEILNGVIDQHVPITKQSLSSYPKWYDSELINAICKKKIAHSTWKSSNS
FT                 KRDEIEFKRLRAVCVRLSRSKYRAYISSVELGLKRNMRTFWSFIKNLRNDS
FT                 SIPSKMYHGPTRAASDVEVSNLFSGYFSSVYRTDSLREFESNDEPLVSLSN
FT                 IVLSIETLRSIVANLDDNINGGPDGIPPYFIKRCWSLLERPIVHIFESMLR
FT                 SGYFPTFWKYSFVVPIYKNGDRHSVANYRPISTLSCIPKILDAYLASELSN
FT                 SLLSKVAQQQHGFISGRSTLTNLLVFNDFLSESLCNHEQTDAVYTDMSKAF
FT                 DSVNHSRLISKLFNFGIRGKLLDLLRSYLTNRSQAVRVNGAVSSPVDVPSG
FT                 VLQGSHLGPLLFCLYVNDLVPKLSAAQVLLYADDIKLFMRVRSADDSVKLQ
FT                 RDLDTLVAWSVENGLSLNANKCSVISFSRSKSLLLFNYCINGSRLQRVDVV
FT                 KDLGVIFDSSLTFITANQQTDVVVSRSLRMLGFIKRSTVDFSDPSAIIYLY
FT                 KTLVLPHFLYCPQIWRPHSQYLINKLESVRHSFLRYIAFKMGKPLHRFCHD
FT                 YSEIAEGCDIXTVDSTFYLHDCVMTFKILRGLTNCERLSDLFVSRTVAYPL
FT                 RNLRDLREGTFSSNLGFYSSINRMKRQWNSIPNNVQSKESVGQFKSSIRSL
FT                 SLAY*"
XX
SQ   Sequence 3601 BP; 908 A; 802 C; 764 G; 1126 T; 1 other;
     tacgtaccct cgagaaggat gtacaggacc tcgagacgga ttgagtaagc aggaggaact        60
     gacggctggc tacagtggct tttccaatgc atggacgtta acccgtataa taatgtctca       120
     cagagcttgg actgtggagc tttttctgct gaactgcacg ataggaccta tagatccttc       180
     aacgtcctta tgtacaacgt tcttgtcgaa agcaacaact tctaggtgcc attactggtc       240
     ttaatgttga tgaaatctct ggacgccgtt ttcccaggac ctcaagaaac agctcttttc       300
     ctggtacggt ttggctcgag tgatgatgct tctcgtgtcc tgaagaacag aaagctgctt       360
     cctagctcgg tcgaggccac tgcagaccac acagcttatc agagggatct atacagaaaa       420
     ttgaagctaa aggcttcatt acacaatacc tcccatcctg acagtctaaa aaaggttgtc       480
     tatgtcaagg gcacgccaac cctggtggat cttaggagga cctctacggc tccgctcagt       540
     gagaaacctt caaaaaactt gcaggcatct taaagccagt caacaaactg tcgctttact       600
     accaaaacgc ctattctatg tacggtaagc ttcatctctt taaggctaaa ctgtttcaac       660
     tctctatctt gccggatatt gttgttataa ctgagacttg gctccaggat tgtgtcttgt       720
     cttctgagct gggaatgcag cagttcgacg tgttcaggtg tgatcgtgac ctgtcatcgc       780
     atggagtcca gaggggtgga ggagtcctga ttggagtcaa gaagtttcta caggctgaac       840
     ttgttcatgt tgataatgtg attgagcaac tcattattag aatctctctt ccctctcata       900
     aacttattgt tgcggcctct tatttacgcc ctgactcttc tgtacaggtg ttctccagcc       960
     atgtatctaa ccttgaagat gcgaacatca aatttcctga ccatcgcatg gtactgctgg      1020
     gggatttcaa tttgcatcac atcacctgga gctcagacac ctcggcttac tcaccgatgg      1080
     cctacctcag cccagcattg aggtctgcag cagatatcat cagtggctac tccacttcca      1140
     tggatctggt ccagcacttc aagcatcatc caaagaaggg atactctttg gacttgcttt      1200
     ttgcccagaa ggatttcatc tcaccgatgg acttcaatga agacattctg ccctgtgatg      1260
     atcaccatgt tcctggcatg ttctcgtgta atattagtgt agcgtcgtct gcgtcctgta      1320
     atcttaagtt ttgtaagcgt aaattttact ctgcggattt tgaggcaata agggctcgtc      1380
     tttcggagga ggactgggcg actgttttgt attctttctc agatgatcct gactctggta      1440
     tagccagatt ttatgaaatt cttaatggtg taattgacca gcacgtacct atcacaaagc      1500
     agtctctcag ctcgtatccg aaatggtacg actcggaatt gatcaacgcg atttgtaaaa      1560
     agaaaatcgc tcattccaca tggaaatcgt cgaattccaa gcgtgacgaa atcgaattta      1620
     aaagattgcg tgcagtgtgt gtgaggttat ctagatctaa gtatcgtgcg tatatctctt      1680
     cggttgaatt aggcttgaag cgtaatatgc ggacattttg gtccttcatt aaaaacttaa      1740
     gaaatgattc aagtattccg tctaaaatgt accacggacc cactagggcc gccagtgatg      1800
     ttgaagtgtc taatcttttt tccgggtatt ttagctccgt ttatagaacg gattctctgc      1860
     gtgagtttga gtctaatgac gagcctctgg ttagtttatc taacatcgta ctgtccattg      1920
     aaaccttacg tagcatagtg gccaatttgg acgacaacat caatggcggc cctgatggta      1980
     ttccaccgta cttcataaag agatgttggt cattattgga gcgtcctatt gttcatattt      2040
     ttgagtccat gcttcgctct ggctatttcc ctaccttttg gaaatactct tttgtcgtac      2100
     ctatttataa aaatggagat aggcatagcg tagcaaacta tcgaccaata tccacgttaa      2160
     gctgcattcc caagattctt gatgcctacc tggcatcaga actgtctaac tctctcctat      2220
     ctaaagtcgc tcaacagcag cacggcttta tcagtgggcg ctccacgctt actaaccttc      2280
     tcgtatttaa cgatttcctg tcagaatctc tttgtaacca tgagcaaact gatgctgttt      2340
     ataccgatat gtcaaaagcg tttgactccg tcaatcacag ccgtcttatt tcgaaactct      2400
     tcaactttgg tatacgcggg aaattgttgg atcttctgag atcctattta acaaaccgtt      2460
     cgcaagcggt aagagtgaac ggggcagtgt cgtctcccgt ggacgtacca tccggagttc      2520
     tgcaaggttc ccacctggga cctttattgt tttgtttata cgttaacgac ctcgttccta      2580
     aactcagtgc tgcgcaggtt ttgttgtatg cggacgatat taaattgttt atgcgtgttc      2640
     gttcggcgga tgattccgtt aagcttcaga gggatttgga tacacttgtg gcctggtcag      2700
     ttgagaacgg actatctttg aatgccaata aatgctcggt gatctcattt tccaggagca      2760
     agtcgttgct tctctttaat tattgcatta atggatctag gctgcagaga gttgatgtgg      2820
     tcaaggatct tggcgtgatc tttgactcat cattgacgtt tataacagca aactgacgtg      2880
     gtcgtgtcca ggtccctccg aatgctgggc ttcatcaaga gatccaccgt tgatttctcg      2940
     gacccctctg cgatcatcta tttatataag actttggtac tccctcactt tctatactgt      3000
     ccacagattt ggcgacctca ctctcaatat ctaattaata aacttgaatc ggtacgtcat      3060
     tctttcctta gatatattgc ttttaaaatg ggtaaaccct tacatagatt ttgtcatgac      3120
     tactcagaaa tcgcagaggg gtgcgacatc cyaacggtgg actcaacgtt ttatctccat      3180
     gactgcgtta tgaccttcaa gattcttcgt ggtctaacta actgtgagag actgagtgat      3240
     ctctttgtta gtcgaacggt ggcgtatccg ttaaggaact tgcgtgatct tcgagaaggc      3300
     accttctcct ctaatctcgg gttttacagc tctattaacc gaatgaaacg ccaatggaat      3360
     tctatcccga ataacgtcca aagtaaggag tctgttggtc aatttaagtc ctctatccgc      3420
     tcgttatcgc tggcctacta gccagatata tgtatctccg tattattatt atttttgtac      3480
     attcgaatct aatgaactat ttgtcacttg ttttatattt ctcaaaactt gtatttatta      3540
     tagtattttt gtaaagggcg cttcgcccgt taaattatta aataaataaa taaataaata      3600
     t                                                                      3601
//
ID   CR1-70_AAe  repbase;    DNA;    INV; 4115 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-70_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4115
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1158-1158 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 25 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..961
FT                 /product="CR1-70_AAe_1p"
FT                 /translation="MASCCFACSNDLVQEEEIVCKGFCKSTFHLRCVHLSP
FT                 EIRTVIQSNSQLYWMCSACTKMMKNATFRQAIASTNEAMLHLEVQQNKVLE
FT                 ELRSEIKQNTAKINSILSLTPRTPKRVGEFHFSSQLAKRNRTDGSSSVNRL
FT                 STRDEQVGSKDDDPSIVVPLASQVQKCWLYLSQFDPKATTDDIVRLVKRNL
FT                 ETESDVQVVKLVPKGRRIEDLSFVSFKVGIEMDLREKALLATSWQKGIYFR
FT                 EFEFSRSARPDVFRFEP"
FT   CDS           942..4031
FT                 /product="CR1-70_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSFVSNLSSSHSFAPISPTLHSPIPSPARKPVRKNDY
FT                 NVHSVDEIRIYYQNMNSIRSSGRLQSVFLSSVENDYDVYVFCETNLDASIT
FT                 NGMIFHESFVTYRCDRSPLNADKPSGGGVLISVRATLPSCIINESSCNEEV
FT                 SVRISIGKTDIVLCCIYLPPDASLARYSSHCDSVRKLVDTASPESKVIVIG
FT                 DFNLKNTIWYRENENDLHLLPLQVRTPEETAIVDELTACALVQVCGIPNQN
FT                 NRFLDLTFTNDDECCQMDLCEPLLHNETHHNAMSLTVNYNKLTYDESALHS
FT                 QPTRXKLDLKRCDYADIVQELLTVNWDDIFIEYETFDAAQLNASIDSMVSY
FT                 LRRFEMFDELGNGVHRVNNAVDFNVLAFYATIYEVFSRHCRVVNSKRGGPV
FT                 YPEWFDSETVQLLKIKNKLHNKFRRSKSIRDEDAYRQALREFKTKQRSQYA
FT                 AYMDELQFNIQANPKVFWKYVSKKRRDTGIPVNVTYKSTNADCIERAAELF
FT                 AEYFNAVYSERNEIQVPVYPRAEERLPEIALSLDEVCLKMQTLDVSKASGP
FT                 DGIPNICIKSCVEAFALPLHKLFNLSLSCGYFPALWKISHIVPVHKKGSKL
FT                 PVENYRGIAILSAIPKMFESLIYDQLYSWIEPRISSCQHGFLKKRSTTTNL
FT                 AEFVSRTSQWMMDGLQVDTIYTDMSKAFDVININAILSVLGKHGIEDRILS
FT                 WLRTYLENRTQYVKLHQTRSKSFSVDSGVPQGSHLGPLLFILVMNELPSYL
FT                 DGVYILIYADDVKIFIPISCLKDCRNLQRNVELFSNFCMQFGLKVNVSKCN
FT                 VVSFSRKPNTIHYDYRMSADVIHRSFCVNDLGVDLDSELSFTKHIDKVIAK
FT                 ANAMFGMIRRLGQEFDDPYTIISLYVGLVRSIIEYAGIVWQPYYETHKTRI
FT                 ESVQKKFVRFALRNLGWRDVLPDYKSLCTLVGIDSLEIRRKTADALFLKDI
FT                 IDGRYNSQYLAGQISLYEGRTGLRLTRPFQIPNRVQNYARNEPIYRMMSFY
FT                 NANRDCLNVEMSKEQIKYVIRFNF"
XX
SQ   Sequence 4115 BP; 1208 A; 826 C; 882 G; 1198 T; 1 other;
     gtacctaatt gcgatccaat aatttcgtag ttttcgacgc gtttggcatc gtatttattt        60
     tgtacttcgt tcagaatcga cgtggaatta cctcgtgtat ttgaaaatcg tggagttcgt       120
     ttgagtttcg aacaatttct cgagatttta cgttctgaaa tccttaccgt atagtttcac       180
     cacaacaatg gcttcctgtt gttttgcatg cagtaacgat ctcgtccaag aagaagagat       240
     cgtctgtaaa ggtttctgca agtcaacctt ccatctccga tgtgtacacc tcagtccgga       300
     gattcgcaca gtgatccagt ctaactctca gctgtactgg atgtgctcgg cttgcacgaa       360
     gatgatgaaa aacgcaacgt ttcgacaggc tattgcatcc acgaatgagg ctatgctaca       420
     ccttgaagtg cagcaaaaca aagtgttgga agagctaaga tctgagatta agcaaaatac       480
     agcgaaaatc aactcaatac ttagcctgac accacgcact cctaaacgcg taggtgaatt       540
     ccatttttca tctcaacttg ccaaacggaa cagaaccgat ggtagtagct ctgtaaatag       600
     gctatctaca cgtgatgaac aggtaggaag taaagatgat gatccgagca tagtggtgcc       660
     cttggcaagc caagtgcaaa aatgttggtt atatctttcg caattcgatc ctaaagctac       720
     taccgatgat attgttcgat tagtgaaacg taatttggag actgaatcag atgtgcaagt       780
     ggtaaaactt gttccgaagg gacgaagaat tgaggatctt tcgttcgttt ccttcaaggt       840
     gggaattgag atggatttga gagaaaaggc actgttggcc acgtcgtggc aaaaaggaat       900
     atatttccga gaatttgaat tctcgcggtc ggctcgccct gatgtctttc gtttcgaacc       960
     ttagctctag tcattcattt gcgccaatat caccgacttt acactctccg atcccgtctc      1020
     ccgctcgaaa gcctgtaagg aaaaatgatt ataatgtcca ctctgtcgac gaaatacgca      1080
     tatactacca gaacatgaac agtatccgta gtagcggccg actgcagtcc gttttcttgt      1140
     cgtccgtcga gaatgactac gatgtttacg tattctgtga aacgaatttg gatgcgtcaa      1200
     taacgaatgg aatgatattt catgaatcat ttgttaccta ccgatgtgat cgttcgccgt      1260
     tgaatgccga taagccatcc ggagggggtg ttctcatctc cgtaagagcc actcttccga      1320
     gttgtattat taatgagtca tcctgcaatg aagaagtctc agtaagaatc tccattggaa      1380
     agaccgacat cgtcttgtgt tgcatttact tacctcccga tgcgagtcta gcacgatact      1440
     cgtcacactg cgacagcgtt cgtaaactgg tcgatacagc aagccctgaa agcaaagtta      1500
     ttgtaattgg tgactttaat ctgaaaaaca ccatttggta ccgtgagaac gaaaacgatc      1560
     tgcatctctt accactgcaa gtccgcacac cggaggaaac tgctattgtt gatgaactga      1620
     ctgcctgtgc actggttcaa gtgtgtggta ttccgaatca aaacaatcgt ttcctcgatc      1680
     taacatttac gaacgacgat gaatgttgtc aaatggactt gtgtgagccc ctactccaca      1740
     acgaaactca tcataatgct atgtcactca ccgttaacta caacaaactt acctatgatg      1800
     aatctgcact gcacagtcaa ccaacacgac ktaaattgga cctcaagaga tgtgattacg      1860
     ctgatattgt gcaagagctc ttaaccgtca attgggatga tattttcatt gaatacgaaa      1920
     cgtttgacgc agcacaattg aatgcatcca tcgactcaat ggttagctac ttacgcaggt      1980
     ttgaaatgtt tgatgaatta ggaaatggtg tacatcgtgt gaacaatgct gtcgacttta      2040
     atgtgttagc attttatgct accatctatg aagttttttc aagacattgc cgtgtcgtta      2100
     acagtaaaag aggtggccca gtctaccccg agtggttcga ctccgaaact gtacaactgt      2160
     taaagattaa gaacaagctg cacaacaagt tccggcggag caaatcgatc cgtgatgagg      2220
     atgcgtacag acaagcattg cgagagttta aaacgaagca acgttcccag tatgcggcat      2280
     atatggatga attgcaattt aacattcagg ctaatccaaa agtgttttgg aaatatgtca      2340
     gcaaaaaacg gcgtgatact ggaatcccag ttaatgttac gtacaaatcg acgaatgctg      2400
     attgcatcga acgtgcagct gagttgtttg ccgaatactt caatgcagtt tactccgaac      2460
     gaaatgagat tcaagtacct gtatatcccc gtgcggaaga gcggttacct gaaatagcac      2520
     tgtctttgga cgaagtgtgt ttaaaaatgc aaacgttgga tgtttccaaa gctagcggtc      2580
     ccgatggtat tccgaatatt tgtatcaaaa gttgcgtcga agcgttcgca cttcctttac      2640
     acaaattgtt taatttgtct ctttcttgtg gctatttccc ggcgctgtgg aagatctcgc      2700
     acattgttcc ggttcataaa aagggttcca agttgcctgt ggaaaattac cgtggaatag      2760
     ccattctatc cgcaataccg aaaatgtttg aaagcctaat ctatgaccag ctttattcat      2820
     ggattgaacc gcgtatttca tcatgtcaac atgggttctt gaaaaagcgc tctacgacca      2880
     cgaatctggc tgaatttgtg tctcgaactt cccagtggat gatggatgga ctacaagtgg      2940
     acacaatata tacagacatg tctaaagcgt tcgatgtcat taacattaat gccattctat      3000
     cagttttggg aaaacacggc attgaagatc gaattctcag ctggcttcgt acttatttgg      3060
     aaaatcggac ccaatacgtt aagctacacc aaacgagatc gaaatcattt tctgttgatt      3120
     ccggggtgcc tcaaggtagc catttgggcc ctttgctctt catccttgtc atgaatgaat      3180
     tgcctagtta cctcgatgga gtctacatcc tcatttacgc cgatgatgtc aaaatattca      3240
     ttcctataag ttgtttgaag gattgtcgga atctacaacg aaatgttgag ctgttctcca      3300
     acttttgtat gcagtttggt ctaaaggtca atgtttctaa atgcaacgtg gtgtctttct      3360
     ctagaaagcc taatacaatc cactatgact atcgaatgag tgcagatgtc atacatcgat      3420
     cgttttgtgt gaatgacttg ggcgtggacc tcgatagtga actatccttt actaaacata      3480
     ttgacaaggt aatcgcaaaa gctaatgcca tgtttggaat gattagacgg cttggacagg      3540
     aattcgatga tccgtacaca ataatttctc tctacgttgg attagttcgt tcgattattg      3600
     agtatgctgg gatagtttgg cagccatatt acgaaacgca taagacaaga atcgaaagtg      3660
     tacagaaaaa gtttgttagg tttgcactcc ggaaccttgg gtggagagac gttttgccgg      3720
     attataaatc attatgcacg cttgttggaa ttgattcgct cgaaattaga agaaaaacgg      3780
     ctgacgcttt gttcctaaag gatataattg atggtagata taattctcaa tacctagcag      3840
     ggcagatttc attatatgag ggtagaacag gtttaagatt aacaaggccg tttcaaattc      3900
     caaatagagt tcaaaactat gctaggaatg aacctatata tcgtatgatg tcgttttata      3960
     atgcaaaccg tgattgttta aatgttgaaa tgtccaaaga acaaattaag tatgtaataa      4020
     gatttaattt ttagttgtat tgacggaaga acattgtaat tagtttaaga taatgggcaa      4080
     atgcctacag tcacaataaa tcaaatcaaa tcaaa                                 4115
//
ID   CR1-71_AAe  repbase;    DNA;    INV; 3987 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-71_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3987
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1159-1159 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..918
FT                 /product="CR1-71_AAe_1p"
FT                 /translation="MHVPSVSISSTVSAPPRPQRYIPFSVSTSTSTISSLP
FT                 AIRDHTQVVHNVPNHQPNTQVSQMNIATQNSVGNVNYSRNTPIQPTTVPSL
FT                 SVAPASTPFKWYYLTRFQPYETQQNIVSFIVSKTNCDPSLISCHKLVRSNR
FT                 DENIPLTFVSFKISVPAEIEAFITAPHFWPAGVSIKPFAVRNESSSQHFLS
FT                 TRQSRIALNMPSPRQRATLQTNYRQIISPLASPLPLSHRVVHQPFLYXQQA
FT                 GRSTPQLTTMV"
FT   CDS           1014..3800
FT                 /product="CR1-71_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYAFTETWLNCDTISSQIFGHSYNVFRLDRNSRNSIK
FT                 KSGGGVLLAVRSNLKSRQLSISNSDAVEQVWVAVSFQTHTLYICVLYIPPD
FT                 RTSDSNMIDQHISSLTSIVNQMEIRDSLMILGDFNLPGIEWKQSSSSYLYP
FT                 DVTHSTISSLVSKLIDSYSLARVSQLNSVRNNNGRMLDLCYGSIEGDVCFS
FT                 LMEAPSPLINQSIHHPPLLIELRGASPCVFMEPVETLYYDFKRGDYCSMNA
FT                 FLSNIEWQDFINQDLEFSVGTFSNIVLYAIDQFIPKHSRNPQPNPPWSNNR
FT                 LKRLKSLKRSALRKYSKHKTPANKRVYNSANSRYKRLNQKLFSAHQRKVQQ
FT                 NLRHNPKHFWNYVNEQRKESGLPNVMSKGNVECSSLNGICDLFLSQFSNVF
FT                 TQETLNDEQIRNAANNVPVHPPVGNHPIVDPEEIGKICFSMKSSTSSGPDG
FT                 IPAYILKKCSISLSTPLSRLFNLSLQVGSFPVQWKRSYVYPVFKKGNKREV
FT                 CNYRGIAALCAVSKLFEKVVYNFLFHHCHHYISEYQHGFMPKRSTNTNLVV
FT                 YTTFIAKALQKGKQVDSIYTDFSAAFDKINHQIAIAKFERLGFSGYFLSWL
FT                 HSYLNGREMAIKLGDAVSSYFHASSGVPQGSHLGPLIFLVYLNDVNLLLKS
FT                 FKLSFADDFKLYWIVNNVDDALFLQSQLGIFTDWCETNRMHLNASKCSVMS
FT                 FSRKRILIDYDYKIRSTSLKRESVIKDLGVLLDPKLTFKEHIDFIASKASK
FT                 TLGFIFRVAKNFRNIQCLKSLYCSLVRSILEYSSVVWAPYYQIDIFRIEAI
FT                 QRKFLRFALRHLPWNDPINLPSYEDRCKLIGLELLSVRREVSKSLFVSDLL
FT                 QSRIDCAQLLSLLNINVPYRQLRSNSFLFLHGARTNYGHHEPFKSMCRSFN
FT                 RCFNEFDFHLSRPTLRKKFHLVLAS"
XX
SQ   Sequence 3987 BP; 1158 A; 953 C; 682 G; 1189 T; 5 other;
     gcctccaatc aagcctccaa tcaagcctct aaacaagcca tacctcacgc accaaaccaa        60
     gccacagctc aagccaccta ttctatccaa gaatgcccaa acgccacaac gctcgctacg       120
     tatcactccc aacttccatt gcatctaaat agctcatcat taatgcacgt tccaagtgtc       180
     agcatatctt caaccgtttc agctccacca cgacctcaac gatatattcc attttcggta       240
     agcacctcta ccagtactat ttcatcgctt cccgctattc gggatcatac gcaggtagtt       300
     cataatgtac caaatcatca accaaacaca caagtgagtc aaatgaatat agccacacaa       360
     aactccgtag gcaatgtaaa ctacagtaga aacacaccga ttcagccaac caccgttcct       420
     agcctttctg tcgctccagc atccacacca ttcaaatggt actacctaac cagattccag       480
     ccctacgaaa cacaacaaaa tattgtttca tttatcgtga gcaaaaccaa ctgcgatccc       540
     tcactgataa gctgccataa actcgtacgt agtaatcggg atgaaaacat acctctaaca       600
     tttgtctctt ttaaaataag tgttcctgct gaaatcgagg cttttattac cgctccacat       660
     ttttggccag ccggtgtttc gatcaagcct tttgccgttc gaaatgagtc aagtagtcag       720
     cattttttat ctacgcgcca aagtcgaata gccctgaata tgccatcacc mcgccaacgt       780
     gctacccttc aaaccaacta tcgacaaata atttctccac ttgcatcccc cctcccgctg       840
     tcccaccgag ttgtgcacca accattcctg tatcamcaac aagctggcag atcaactcct       900
     caactcacga cgatggttta aatcataaat tattggttta ctaccaaaat ttaggaggaa       960
     tcaacaccmg catctctgag taccgtcttg cctgctcaga ctccagttat gatatgtatg      1020
     ctttcaccga aacatggcta aattgcgata caatttccag tcaaattttt ggtcattcat      1080
     ataatgtgtt ccgcctcgat cgtaactcta gaaacagcat taagaagtcc ggaggaggag      1140
     ttttgttagc ggtacgttcc aacctaaaat cacgacaatt atccatttca aactctgatg      1200
     ccgtcgaaca agtttgggta gcagttagtt ttcagacaca tacgttgtac atttgtgttc      1260
     tttacatacc tcctgatcga actagtgact cgaatatgat tgatcagcac attagctccc      1320
     tcacttcaat agtaaatcaa atggaaataa gggatagttt gatgatcctc ggcgatttta      1380
     acctacctgg catcgaatgg aaacaaagct catccagtta tctttaccct gatgtaactc      1440
     attccacaat aagctctttg gtgtcgaagc ttatcgacag ttatagctta gcccgtgttt      1500
     ctcagctcaa ctccgtgcgc aataataatg gtcgaatgct tgacctttgt tatggtagta      1560
     tcgaagggga tgtgtgcttt tcattaatgg aagctccttc tcctctaata aaccaatcaa      1620
     ttcatcatcc tcctctattg attgaattgc gtggtgcttc accctgtgtg tttatggaac      1680
     ctgtggaaac gttgtattac gacttcaaac gtggtgatta ttgcagtatg aatgcttttc      1740
     tgtccaatat cgaatggcag gatttcatca accaggactt ggaattttca gttggtactt      1800
     tctccaacat agtactgtac gcaattgatc agtttattcc taagcactcg agaaatcctc      1860
     agcccaatcc gccatggagc aacaatcgtc tgaaacgctt gaaaagttta aaacgatctg      1920
     ctttgcgtaa gtactcaaag cacaaaacgc ccgcgaataa acgtgtttat aactctgcca      1980
     attctcgata caaacgcctg aatcaaaagc tgttttccgc gcatcaacgg aaggttcaac      2040
     aaaaccttcg tcacaatcca aaacactttt ggaattacgt taacgaacaa cgtaaggaat      2100
     ctggtctacc caacgtaatg tccaagggaa atgttgaatg ttcgtccttg aatggtattt      2160
     gcgatctttt cctgagtcag ttttcaaacg ttttcactca agaaactctg aatgatgaac      2220
     aaatccgcaa tgctgccaac aatgtaccag ttcatccacc agtcggcaac catccaatag      2280
     ttgatcctga agaaattggc aagatttgct tctccatgaa atcatcgaca agctccggac      2340
     ctgatggcat tcctgcatat attttgaaga aatgctccat aagtttatct acgcctcttt      2400
     ctcgtctctt caatctatct ctgcaagttg gatcatttcc agtccaatgg aaacgaagct      2460
     atgtataccc agtattcaaa aaagggaaca aacgtgaagt ctgcaattat cgtggaatag      2520
     ctgctctttg tgccgtttcg aagttgttcg aaaaagttgt ttacaacttt ttgttccatc      2580
     actgtcatca ttacatttcg gagtaccaac atggtttcat gccgaaacgc tcaactaata      2640
     caaatttggt ggtatataca actttcatcg ctaaagctct acagaaaggg aagcaagtag      2700
     attctatcta caccgatttc tcggccgcgt ttgataaaat caatcatcag atagctattg      2760
     caaaattcga acgtctcggt ttctccggat attttcttag ttggcttcac tcctacttga      2820
     acggccgaga aatggccatt aaattaggtg atgctgtttc atcctacttc cacgcttcat      2880
     ccggggtacc acaaggaagt catctaggac cgttgatatt tctcgtgtat ctcaatgacg      2940
     ttaatcttct acttaaatct ttcaaacttt cttttgccga cgacttcaaa ctgtattgga      3000
     ttgtaaataa tgtagatgat gcattatttt tgcaatctca gctcgggata tttaccgatt      3060
     ggtgtgaaac taatcgcatg cacctaaacg cttcgaaatg ctctgtaatg tcgttctccc      3120
     gaaaacgcat tttgatagat tacgactata aaattcgatc cacatctctc aaaagagagt      3180
     ctgtcattaa ggaccttggt gtgttactag acccaaaact gacgtttaag gagcatatcg      3240
     acttcattgc ctctaaagcc tctaaaactc ttggttttat tttccgcgtc gctaaaaact      3300
     tcagaaatat tcaatgctta aaatcattgt actgttcttt ggtaaggtct attcttgaat      3360
     attcgtcagt tgtttgggca ccgtactatc aaattgacat atttcgtatt gaagcaattc      3420
     aacggaaatt tctgcgcttt gctctgcgac atctcccatg gaacgatcca attaacttgc      3480
     ccagttatga agatcgttgc aagttaatcg gcttagagtt gttgagtgtt cgccgtgaag      3540
     tttcaaaaag tctctttgtt tccgaccttc tccaatcgag aatagattgc gctcaactat      3600
     tatctctcct caatataaat gttccatacc gtcaacttcg atcgaactcc ttcctatttt      3660
     tgcacggtgc tcgcacaaac tacgggcatc acgaaccatt taaaagtatg tgccgatcgt      3720
     tcaaccgttg tttcaatgaa tttgattttc atctttcccg tccaactctt cgtaaaaaat      3780
     tccatctggt tctggcaagc taggtttata ttagtcatag ttattaagta gatttaagta      3840
     atctttgtat cagttggaaa mawatgtaat agtctgttga tacgaaaaga agaggaggtt      3900
     ttgcgcccat ttgagaaaga gctcaatatt gctcagctca aatgggcttt tccctgctcc      3960
     aaataaacaa ataaacaaat aaacaaa                                          3987
//
ID   CR1-72_AAe  repbase;    DNA;    INV; 4826 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-72_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4826
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1160-1160 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1762
FT                 /product="CR1-72_AAe_1p"
FT                 /translation="MVQTRKCDASPCFGSSSRTGKISCVRCQKSFHLKCTG
FT                 ITTNQFKSVRDCPGAVWLCIICRNTPDLDQAATNFTYNMILDRLNSVYRLV
FT                 NSQIDVTRWLCSTFGHNPPHQKNSTPPPVSHVHNETSNHNFMDQIENLQFN
FT                 FTREFNDFGDASINNTGNNRSSSPPSILTSSKSGHSTEVVVPSSIPISAIT
FT                 TVQSFVENSRALTNVANTDVTTQATTSATMPATATESTAAYPTSTVIIDTA
FT                 ATVQATVTKPTTATAPNVTTSTTMPTATIALTLPKTATATVTTSTTATAMH
FT                 ATTSKTNAPPAASVTRSSGKNACTQTIPYPTTHIAPPVSARANTLPSHQPA
FT                 RPTSSTTPSVSTNYPTSVPVLAIAPPSSNSSANDTWYYVTRFQPNETVQNI
FT                 VAYISHKANCKPEHIRCLKLTRQINSESLTFVSFKVSVPKSIEELISATEF
FT                 WPIGITVSPFLERRSNIYRRKKPFSPVPSRLVPRQMRGAQLNPPANVPTST
FT                 LLRAVPQHYFNSNKVQPRMPPPPRRFQSSLV"
FT   CDS           1513..4653
FT                 /product="CR1-72_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ILAYRNNRVAFFRTALEYLPTQKAFFAGSLALGSTTN
FT                 ARSPTESTSECTNFNSSSSGSTTLFQLQQGSTPNATTATPFPIIPRLDNVL
FT                 SLYYQNVGGINSSLHSYNLACSDASYDLVAFTETWLDEGTLSKQIFGSDYI
FT                 VFRQDRNEFNSRKTRGGGVLLALRSTLACKQLYPPNCTIVEQIWVSVNLTS
FT                 FTLFICVIYIPPDRVNDLAIIESHLDSLTWITSKMQLTDKIIIIGDFNLPG
FT                 ISWTRARTNFLFPDSSKSTTTSSSINLLDGYSLANLCQINDVPNSNGRCLD
FT                 LCYITEELLSSDSIKLSAAPGPLVKTGCHHPPLHISISVPQPLKYIDIADS
FT                 MYYDFNKTNFMSMNSFLLGIDWESILADSEISSVVKTFSNVLLYAIDRFTP
FT                 KRQKRSKSYPPWSNPHLKRLKSIKRCHLKKYSKHHTDFFKLQYNASNRMYK
FT                 DLNDQLFSDYQQRMQLDLKNNPKKFWSYINDQRKESGLPSSMKLGNVETSS
FT                 IARICNLFREHFSSVFTDELLNDDEVLRAANNVPHHSSCGQHPTVTTQMVE
FT                 TALCKLKSSSNPGPDAIPSIILKRCSSSLSAPLSFIFNLSLKCGTFPSHWK
FT                 DSFVFPIYKKGCKRDVSNYRGIAALCAVSKLFELIVLEFITHNCSLYISET
FT                 QHGFMPKRSTTTNLLSYISFVTRCIQDRLQVDAIYIDLSAAFDKINHKIAV
FT                 AKLEKLGFSGAFLSWLRSYLVGRTMSVKIGDCISSPFFVSSGVPQGSHLGP
FT                 FIFLLYINDVNLSLECFKLSYADDFKLYNVIKCDNDTALLQKQLDVFVVWC
FT                 KNNKMILNASKCSSISFSRKHTITEFNYHIGEVTLNRVKSIKDLGVMVDYK
FT                 LTFNDHISYIVSKASKSLGFIFRVAKHFSDIHCLKSLYCSLVRSVLEYAAI
FT                 VWAPFYQNSIQRIESIQRKFLRFALRNLHWRDPLHLPSYIDRCQLIHLNLL
FT                 STRRDVCKLLFVSDLIQCRIDCSNLLEKLNFDIHIRTLRSHLFFRLPTNRT
FT                 NYGYHEPVISMCRLFNQYCNVFDFHLSRPVLKHQFVQMLGV"
XX
SQ   Sequence 4826 BP; 1388 A; 1209 C; 817 G; 1412 T; 0 other;
     tttttttttc attttcttac acgaaattca ttgacaaatt attaaagtgt agtgtaaagc        60
     atatttcgct aaacggacaa tcccatctta tggaattaca tccccaagtg gccaccgtcg       120
     cgaatttcat ctgattatcg gtcacgctat tgttcgctcc acgaagcagt atacaacaac       180
     aatggtgcaa accaggaaat gtgatgcatc accttgtttc ggaagctctt ctcgtactgg       240
     aaagattagc tgtgttagat gtcagaaatc ctttcacctc aaatgcactg gaatcactac       300
     caatcagttc aaatctgttc gagactgtcc cggtgctgtg tggctgtgta taatatgccg       360
     caatactcct gatctggatc aagctgccac aaattttaca tacaacatga tactggatcg       420
     actcaattca gtctatcgac tggttaatag ccaaattgat gttacccgat ggttatgtag       480
     tactttcgga cataacccac cccatcaaaa aaactctacg cctccaccgg tttctcatgt       540
     ccacaatgaa acatccaacc acaacttcat ggaccaaatc gaaaatctgc agttcaactt       600
     cacacgtgaa tttaacgact tcggcgacgc ttccatcaac aatactggaa ataaccgttc       660
     cagcagccct ccatcaattt tgacatcgtc aaaatccgga cattccacgg aagttgttgt       720
     tccatctagt attcctatat ctgcaatcac tacagttcaa tcatttgtag aaaactctcg       780
     cgctctgacg aatgttgcca atactgacgt cacaactcaa gcaactacct ccgccaccat       840
     gccagctact gccactgaat ccactgccgc ataccccacc tctaccgtta tcatcgatac       900
     tgccgccacc gtccaagcca ccgtcaccaa gcccactacc gccactgctc ccaacgttac       960
     aacctccacc actatgccca ctgctaccat cgccctcacc ttgcctaaaa ccgctacagc      1020
     cactgttaca acatctacaa ccgccaccgc catgcatgct acgacatcca aaacaaatgc      1080
     tcctcccgct gcatccgtca ctcgctctag tgggaaaaat gcatgtactc aaacaattcc      1140
     atacccaaca actcacatcg caccgccagt atcagcccgc gccaatactc tgccatcgca      1200
     ccaaccagct agaccaacat catcaacaac accatcagta tcaaccaact atcctaccag      1260
     tgttccagtt ttagctattg ctccaccttc gtctaacagc agcgcaaatg atacatggta      1320
     ctatgttact aggttccaac caaatgaaac cgtgcagaat atcgtagcgt atatatccca      1380
     taaggcaaac tgcaaacctg agcacatccg ttgcctcaaa ctaacacgtc agattaacag      1440
     cgaatcacta acatttgtat cgttcaaagt cagcgttcca aaatcaatcg aagagctgat      1500
     ttctgctact gaattttggc ctataggaat aaccgtgtcg ccttttttag aacggcgctc      1560
     gaatatttac cgacgcaaaa agcctttttc gccggttccc tcgcgcttgg ttccacgaca      1620
     aatgcgcgga gcccaactga atccaccagc gaatgtacca acttcaactc ttcttcgagc      1680
     ggttccacaa cattatttca actccaacaa ggttcaaccc cgaatgccac caccgccacg      1740
     ccgtttccaa tcatccctcg tctagacaac gttctgtcgc tttattatca gaacgttgga      1800
     ggaataaatt cttccttgca ctcctacaat cttgcatgct cagacgcttc atatgatctc      1860
     gttgctttca ctgaaacatg gttagatgaa ggtacgcttt ccaaacaaat ttttggtagt      1920
     gactatatcg tgttcaggca ggatcgtaat gaattcaaca gtcgtaaaac tcgcggggga      1980
     ggtgtcctat tagctctacg ctcgacgcta gcttgtaaac agctttaccc tccaaattgt      2040
     acaattgtgg aacaaatttg ggtatctgtt aacttgacta gttttacact ttttatctgc      2100
     gtcatttaca tacccccgga tcgtgtgaat gatctcgcca tcattgagtc acaccttgat      2160
     agtcttacct ggattacttc taaaatgcaa ctcaccgaca aaatcatcat aatcggcgat      2220
     tttaacttgc ctggaatatc gtggacccgt gctagaacaa attttctgtt ccccgactca      2280
     tctaagtcaa caaccacatc ttcatcaatc aatctgctag atggatatag cttagctaat      2340
     ttatgtcaaa tcaatgatgt ccccaacagt aatggtcgtt gcttggatct ctgttacatc      2400
     accgaagagc ttctgtccag cgacagcatc aaattatcgg ctgccccagg tcctctcgtt      2460
     aaaaccggtt gccatcatcc tccattgcac attagcatca gcgtacccca gccactcaag      2520
     tacatcgaca tcgcggattc catgtactac gatttcaaca aaacaaactt tatgtctatg      2580
     aacagctttc ttcttggaat cgactgggaa tcaattctgg cagatagtga gatcagttca      2640
     gtagtgaaaa ctttttccaa cgttttgttg tatgctatcg atcgttttac accaaaaaga      2700
     caaaaacggt cgaagtctta tcctccatgg tccaatcctc atctaaaacg gctgaaatct      2760
     atcaaaagat gccatcttaa aaagtactcc aagcaccata ctgatttctt caagttacag      2820
     tacaatgcat caaataggat gtacaaagac ttgaacgatc aacttttctc cgattatcag      2880
     caacgcatgc aactcgatct gaaaaacaat cctaaaaagt tctggagtta tatcaacgac      2940
     cagcgcaaag aaagcggtct accatcttct atgaaactcg gaaatgtcga aacatcatca      3000
     atcgctagaa tttgtaatct tttccgtgaa cacttctcaa gtgtgtttac tgacgagcta      3060
     ctaaacgatg atgaagtttt gagagctgct aataatgtac ctcaccactc atcatgcggt      3120
     cagcacccta cagtcacaac tcaaatggtg gaaacagcat tatgcaagct caaatcatct      3180
     tcgaaccccg gcccagatgc aatcccatcc atcatcctaa aaaggtgctc atcaagtctg      3240
     tctgccccac tatcattcat ttttaatttg tcgttaaaat gtggaacgtt tcccagtcac      3300
     tggaaagatt cattcgtatt tcccatttac aaaaaaggtt gtaaacgtga cgtttctaat      3360
     tatcgcggaa ttgctgccct gtgtgcggtc tcaaaattgt ttgaactgat agttttggag      3420
     ttcattacac ataactgctc tctttatatc tctgagaccc aacacggatt catgccgaag      3480
     aggtccacta caactaatct gttgtcatac atatcatttg ttactcgctg catccaggat      3540
     cgacttcaag tagatgcaat ctatattgat ctctccgctg ctttcgacaa aatcaaccat      3600
     aaaatagcgg tcgctaaact cgagaagctg ggattcagtg gcgctttcct ctcatggctt      3660
     cggtcttatc tcgttggtcg tacaatgtcc gttaagattg gtgactgcat ctcatcacct      3720
     ttctttgtgt catctggcgt tcctcaaggt agccacttag gacctttcat ctttcttctc      3780
     tacattaatg atgttaattt gtccctcgag tgttttaaac tgtcttatgc cgatgatttt      3840
     aagttgtata atgttataaa atgcgacaac gataccgcat tactacaaaa acaactagat      3900
     gtcttcgtag tttggtgcaa gaacaacaaa atgattttga acgcgtctaa atgctcaagc      3960
     atttctttta gccgtaagca caccatcaca gaattcaatt atcacatagg agaagttact      4020
     ctgaaccgcg tgaagtcgat aaaagattta ggagttatgg tagattataa attgacattt      4080
     aatgatcata tttcatatat tgtttcgaag gcatctaaga gtctaggttt tatattccgc      4140
     gttgccaaac acttctctga tattcactgc ctcaaatcgc tttactgctc tttagtacgc      4200
     tccgttttag agtatgcagc aattgtgtgg gctcctttct accagaatag cattcaacgc      4260
     attgaatcca ttcaacgcaa atttttgcgg tttgcgctgc ggaatttgca ttggagagat      4320
     cctttgcatc ttcctagcta cattgacaga tgtcaattaa tacatttgaa cctgctatcc      4380
     acacgtcgag acgtttgcaa acttcttttt gtatcggatt tgattcaatg tagaattgat      4440
     tgttcaaatc ttttagaaaa attgaatttt gatattcata ttcgaactct tcggtctcat      4500
     ctctttttcc gattacccac aaatcggacc aattatggtt atcatgaacc tgtgattagc      4560
     atgtgccgtc tgttcaacca atattgtaat gttttcgatt ttcatctttc ccgtcctgtt      4620
     ttgaagcatc agtttgtcca aatgttaggt gtttaatatg tagataagga aaagttaagt      4680
     taagttttat ttatgtatca ttgggaattg taatctgttg atacgaaaag aagggtaggt      4740
     tttgtgccta tttgagagag agcattagtt gacagctcaa ctcaaacggg tttttcccta      4800
     ctccgaaaaa aaaacacaaa ataaac                                           4826
//
ID   CR1-73_AAe  repbase;    DNA;    INV; 5095 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-73_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5095
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1161-1161 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1978
FT                 /product="CR1-73_AAe_1p"
FT                 /translation="MTKKCDGEPCXNGSARGGRAACSKCHKQFHLKCVNLT
FT                 GNQYKAVRECPGAFWFCVVCRNGDITSGSRSESYETDNALILQRITSVLKL
FT                 VGIQIDVSRSICRAISSLYSRPKCCNSATKVVSPARPTQNDSRNFLDELER
FT                 MQFEFTEVFNSFINNDPPSSTTGGNKRDRTSSSTSSFPRNDKRMRVDVSVG
FT                 TSDNTDIIVPLLADMDEFSRNNPPDVESTAAVQQLATTQKSNAATTNQAIA
FT                 TTNATSATTTNVASATANATTNATAFTSAITTTTAAVTYPPTINSQVSTIT
FT                 AVNSTASLTTNTNQATSNAPTALPHRDHAASTIYFDRNTAENASSTAPCST
FT                 LPQVPLPHRVMFSTSTVSTSTNATSSRIPSGQHAMPTHMATSESDNNQNAS
FT                 LAHYLTIPPQQSNVVFNSSQNTAITGNYRLNTDIMPPPVAVLSVAPPSTPL
FT                 KWYYLTRFQPHETADNIISFIVSKTKCDPTSIICHKLVRDNRNANFPLTFI
FT                 SFKLSVPATIESFVTTPHFWPTGISIKPFFARNTSNDKPFLGTARQRFLVQ
FT                 NTPSPRYRAALSTRHQQQMSSPLPSPFVNQNSGILPHMSNQQQLIAAQSQL
FT                 NRITSTMV"
FT   CDS           1681..4878
FT                 /product="CR1-73_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KLCHNATFLAYWYFHQAFFCQKHFERQAFLGNSSTTF
FT                 PRSEYPVTALPRRPLHQTSTTNVFTASIPVCESEQWDIAPYVQSTAAHCSP
FT                 ISTQQDNFDNGVNRKLLIYYQNVGGINTRVAEYHLACSDSSYDAYAFTETW
FT                 LNDQTISSQIFGTSYNVFRLDRNLNNSSKKSGGGVLLALRANLKARQLSIP
FT                 SSEAVEQIWVAVSFESHTXFICVLYIPPDRTQDLTLIDQHINSLYWVTTQM
FT                 KINDSLIIMGDFNLPTIKWKLSPSNYLYPDPSHSSISSSTVKLLDSYNVAR
FT                 ISQLNTVLNNNDRMLDLCFGSFEGDVRYVLMEAPSPLVKTSVHHPPLLIEA
FT                 NGAISSTFKEPVEMLYYDFKHGDYRSMNTFLSHINWHDFIDLDLNSSTVTL
FT                 SNILLYAIDQFVPKRSRKSSPQPPWSNNRLKQLKRLKRSLLRKYSKLKTPR
FT                 AKQNYHAANSRYKTLNKNLFLSHQRAVQQKLRHNPKGFWNYVNEQRKESGL
FT                 PTVMFKGNVECSSTEGICDLFLNQFSSVFTNESLQEHQINKAASAIPVHAP
FT                 VGDHPIIDAXTVADVCSSLKASTSSGPDGVPAFILKKCSSSLSLPLSRLFN
FT                 LSLQVGTFPNHWKKSYIFPVFKKGNKQEVSNYRGIAALCAISKLFEKVVYD
FT                 FLFHNCKLFISEHQHGFMPKRSTNTNLVLYTSFIAQTLQKGHQVDSIYTDF
FT                 SAAFDKINHRIAVAKFNRLGFSGSLLSWLQSYLSCREMAVKIGDTTSNFFP
FT                 ATSGVPQGSHLGPLIFLVYLNDVHLQLKSLKLSFADDFKLYWAVKDVKDAQ
FT                 FLQNQLDVFTEWCDTNRMDLNASKCSVISFSRKQSTFHFDYRIRSTTLKRE
FT                 SVVKDLGVLLDIKLTFKEHISYITSKASRTLGFIFRVAKHFKNIQCLKSLY
FT                 CTLVRSILECSSVVWSPYYQNSILRIESIQHKFLRFGLRHLPWSNPHNLPS
FT                 YEDRCKLIGLELLSVRRDVSKSLFISDLLQSKIDCPSLLSQLTFNIPYRRL
FT                 RSCTFLFLQSARTNYGHNEPFISMCRIFNRCSSEFDFHLSRYTLRKKYSQI
FT                 LAASVSRSS"
XX
SQ   Sequence 5095 BP; 1438 A; 1272 C; 878 G; 1502 T; 5 other;
     ttacgcgaac aaaccgattt attatctacg aagactcagt tctgttttgc attgctttca        60
     accatcataa ttcattcgct ataccatacc gccgcctgcc gttcattgcg tgtactagca       120
     cgacagctcg actgtttwca tctgcatctg gtttcacacc atgactaaaa agtgtgacgg       180
     tgaaccttgc ttmaacggat ctgctcgagg cggacgggct gcttgctcca aatgccacaa       240
     gcaatttcat ctcaaatgtg tcaatctgac gggaaaccaa tataaagctg ttcgtgaatg       300
     ccccggtgcc ttttggttct gtgtcgtatg tcgtaatggc gatatcactt ctggaagccg       360
     ctccgaatcc tacgaaactg ataatgcgct tattctccaa cgaatcacat cggttctgaa       420
     actcgtcgga atccaaatcg acgtatctcg ctctatttgc cgtgctatca gttcacttta       480
     ctcgcgaccg aaatgttgta attctgcgac taaggtcgtg tctcctgctc gcccaacgca       540
     gaacgattcg aggaatttcc ttgacgaact cgagcggatg caatttgagt tcaccgaagt       600
     cttcaattca tttattaata atgatccacc ttcttctacc actggaggca acaaacgtga       660
     ccgcacctcc agctctacgt catcatttcc gaggaacgac aaacgaatga gagttgacgt       720
     ttcagttggt acttcggata acaccgatat tatagtcccc cttcttgcag atatggatga       780
     gttttcgcgc aacaacccac cagatgttga atctaccgcg gcagttcaac aacttgccac       840
     gactcagaaa tctaacgctg ccaccaccaa tcaagccatc gccaccacca acgccacctc       900
     cgctaccacc accaacgtcg cctccgctac cgccaacgcc accaccaacg ccaccgcctt       960
     tacctccgcc atcactacta ctactgctgc tgttacctat cctcctacaa tcaacagtca      1020
     agtttctact atcactgcgg tgaactctac agcaagcctc accacgaaca ccaaccaagc      1080
     tacctccaat gctcctactg cccttcctca cagagatcat gccgcaagta caatatactt      1140
     cgaccgaaat actgctgaaa acgcatcttc gaccgcccca tgctctactc tgccccaagt      1200
     gccattgcct catcgagtta tgttttctac atcaacggta agcacttcaa caaatgccac      1260
     ctcatctaga atcccgtcag gccaacatgc tatgccaacg cacatggcaa catctgaatc      1320
     agacaataat caaaatgcat cacttgccca ctaccttaca ataccgccac aacaatcaaa      1380
     tgttgttttt aacagctctc aaaatactgc aattactgga aactatagat taaacaccga      1440
     tattatgcct ccccctgttg ctgtcctttc cgtcgctcca ccatcaacac cacttaaatg      1500
     gtactacctt actaggttcc agccacacga aactgcagac aatattatct cgttcattgt      1560
     aagcaaaacc aaatgtgatc ctacttcgat tatttgccat aagctagtgc gcgataaccg      1620
     taatgccaat tttcctctga cattcatttc attcaaatta agtgttccag caaccattga      1680
     aagctttgtc acaacgccac atttttggcc tactggtatt tccatcaagc ctttttttgc      1740
     cagaaacact tcgaacgaca agcctttctt gggaacagct cgacaacgtt tcctcgttca      1800
     gaataccccg tcaccgcgct accgcgccgc cctctccacc agacatcaac aacaaatgtc      1860
     ttcaccgctt ccatccccgt ttgtgaatca gaacagtggg atattgcccc atatgtccaa      1920
     tcaacagcag ctcattgcag cccaatctca actcaacagg ataacttcga caatggtgta      1980
     aatcgtaaat tgttgattta ttatcagaac gttggtggga ttaacactcg tgtcgctgaa      2040
     taccatctcg cttgttcgga ctccagttat gatgcatatg cgttcactga aacgtggcta      2100
     aatgatcaaa cgatatctag ccagattttc ggtacttcct acaatgtttt tcgattggat      2160
     cgtaatctta acaatagtag taagaaatca ggcggaggag tgctgttagc tctgcgcgcc      2220
     aatctcaaag ctcgtcagtt atcgattcca agttctgaag ctgtggagca gatttgggta      2280
     gctgttagtt ttgaaagtca tactmttttc atttgtgttc tgtatattcc acctgaccgt      2340
     actcaggact tgactttaat tgatcagcac attaattcac tatattgggt caccactcaa      2400
     atgaaaatta atgatagcct gataattatg ggtgacttta atctgcccac catcaaatgg      2460
     aagctgagcc cctcgaacta tttgtatcca gaccctagtc actcctcgat tagctcatct      2520
     acagtgaaac tcctagatag ttacaatgtg gctcgtatat cacagttaaa tacagtactt      2580
     aacaacaatg acaggatgct tgacctatgc tttggtagtt tcgaaggtga tgtacgttat      2640
     gtattaatgg aagccccttc acctcttgtg aaaacatcgg ttcaccatcc accgttatta      2700
     attgaggcta atggtgctat ttccagcact ttcaaggaac ctgttgaaat gctgtactac      2760
     gatttcaaac acggagatta tcgtagtatg aatactttcc tctcccatat caactggcat      2820
     gacttcatcg accttgacct caattcctca accgtaactc tatccaatat cttgttatat      2880
     gcaatcgatc aatttgtccc aaaaagatct cgcaaatcgt cacctcagcc accatggagc      2940
     aacaatcgct taaaacaatt aaagaggcta aaacgatctc tcttacgcaa atactcaaag      3000
     ttaaaaactc cccgtgctaa acaaaattat catgctgcca attctcgtta caaaaccttg      3060
     aataagaatt tatttctttc acaccaacga gcagttcaac agaaattacg acataatcct      3120
     aaaggattct ggaattatgt caacgagcaa cgtaaggaat ccggtcttcc tacggtcatg      3180
     ttcaagggaa atgttgaatg ttcatctaca gaaggcattt gtgatttgtt tttaaatcaa      3240
     ttttctagtg tgtttacgaa tgaatctttg caagaacacc agatcaataa agctgctagt      3300
     gctattcctg ttcacgctcc cgttggtgat caccctatca tcgatgcaga macagtcgca      3360
     gatgtttgct cttccttgaa agcttcaaca agctccggtc ctgatggtgt gcctgctttt      3420
     attttgaaaa agtgctccag tagtctttct ttacctcttt ctcgtctctt caatctatcg      3480
     ttacaagttg gaaccttccc taaccattgg aaaaaatcat acattttccc tgttttcaag      3540
     aaaggaaata agcaggaagt aagcaattat cgtggtattg ccgctctctg tgccatctca      3600
     aaattatttg agaaagtggt gtatgatttc ttattccaca actgcaaact tttcatctcc      3660
     gagcatcaac atggttttat gccgaaacgc tcaacgaata ccaacttggt tctctacact      3720
     tcgtttatcg ctcaaacact gcagaaaggt catcaggtag actcgattta tacggacttc      3780
     tcggctgcat ttgataaaat taaccatcgt attgctgttg ctaaattcaa tcggctcggt      3840
     ttttctggat cattgctcag ctggcttcaa tcttacctga gttgtcgtga aatggccgtc      3900
     aaaattggag acactacatc taacttcttc ccagcaacct ccggagtgcc tcaaggtagt      3960
     cacttggggc ctctaatttt tttagtatat ctcaacgatg ttcatttaca actcaaatcc      4020
     ctaaagctct catttgctga tgacttcaag ttgtactggg ctgtcaaaga tgttaaagat      4080
     gcacaatttc ttcaaaatca gctcgatgtg ttcactgagt ggtgcgacac taaccgaatg      4140
     gatctgaatg caagtaaatg ttcggtgatt tcattttccc gcaaacagtc aacgtttcat      4200
     ttcgactata gaatcaggtc tactactctt aagagagagt cggttgttaa ggacttagga      4260
     gtgttactag acattaaact cactttcaaa gagcatatta gttacataac atckaaagcc      4320
     tctagaacac tcggctttat tttccgtgtc gcaaaacact ttaaaaatat tcagtgcctt      4380
     aagtctcttt actgtacact agtgagatca atattagaat gctcttcagt tgtctggtcc      4440
     ccttattacc aaaatagtat tcttcgaatc gagtcgatac agcataaatt tctgcgcttc      4500
     ggactgcgtc atctcccttg gagtaatccc cataatttac ctagttatga agaccgttgt      4560
     aaacttatag ggttagagct gttaagtgtt cgtcgcgatg tatccaaatc tctgtttatc      4620
     tccgatcttc ttcaatcaaa aattgattgc ccttcgttgt tatcacaact taccttcaat      4680
     attccatacc gtcgtcttcg atcctgcaca tttctgtttc ttcagagtgc tcgcactaat      4740
     tatggacaca acgaaccgtt tattagcatg tgtcgaatct tcaaccgttg ttcgtctgaa      4800
     ttcgatttcc atctctctcg ttacaccctc cgtaaaaaat atagccaaat acttgcagcc      4860
     tcagttagtc gaagtagtta atctttgtca gatagcttag gatataacta gttgtatttt      4920
     agatgtaatt atagatgtaa gccaaaattg tatcatttgg aaaccatgta aattctgttg      4980
     atacgaaaag aagagaaggt tttgcgccca tttgagaaag acgctaatgt tgatctactc      5040
     aaatgggctt ttccctactc caaataaaga aataaagaaa taaagaaata aagaa           5095
//
ID   CR1-74_AAe  repbase;    DNA;    INV; 5135 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-74_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5135
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1162-1162 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..2037
FT                 /product="CR1-74_AAe_1p"
FT                 /translation="MSKKCSASHCITGSSRSSKITCANCRKGFHLKCVGLS
FT                 SNQFKAIRDFPGAEWFCPACRNSPLDLQQSSINPVLNLILDRLASVLRLVG
FT                 VQIDVTRSLCRALSENIRRTSINNRNSVPAQASQYRNFEDALNNLQLEFSN
FT                 VFGSFIDADDNSAAKRDRTSSLSSSHLVSSNSGKRMRVDVPISTSDIANII
FT                 VPSIADATAVNIASSSEPVEACSSDINCITSTENASAATVTSITTSATPTA
FT                 STTASTTPFTRLAPPPANSSHYATSTVAALRPATACSATLAATQAVFTTAT
FT                 QTSPSSATAYKTSVTTEQSTQTNFSALPKPPRTTQLILQSPMISAPASSAT
FT                 CNTTNTVCKNVLPPEDRHLPQSRPSESVDLTVPPTMVSSSGPTIPCYQSSC
FT                 SLASIQTKNNCNSYTRPSLAIAQSAPIISVNSNDNWYYLTKFLPHETESNI
FT                 INYIAHHTNCNPSHIVCQKLVRANSDTRPLSFLSFKIKFPVGIENVVLANG
FT                 FWPQGVTITPFLDRRSNSRKPVGSQTQLRSILRNPRLLNQRSPSLQSNSLH
FT                 NLQPVKYLAPVQRKQIPSPGFKAPNYRVTLV"
FT   CDS           1770..4916
FT                 /product="CR1-74_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KCRACQWILATGSYYNPFFRQAIQQPQTCRKSDTTTL
FT                 NSSKSTFTQSTFTLASVEFIAQSSTGEIPSSSATETNTFARVQSSELQSNF
FT                 SLNGLLCYYQNLGGINTSLTEYLLACSDAAYDIYAFTETWLKNTTPSSTIF
FT                 GNVYSVFRTDRSSLNSSKSTGGGVLLAVRSTLKCRLLQPPNCHAVEQLWVA
FT                 LPVSHHTLYICIIYIPPDRINDPLLTSQHSDSLDWITSQMNLTDKILILGD
FT                 FNMSSISWTTGSSNYLYPNYQQSKINTSQCQLLNDYSTAGLVQISSVYNSN
FT                 HRLLDLCFTSLEHIQDITVVKAAAPLVKDCRHHPPIQLYLKNRVPYEFKPI
FT                 SSGIHYNFRKTDFIKMNQFLSSIDWDDMLRGLSVDTTVEVVSFAVTHAIGL
FT                 FTPKTSHKDPSFPPWSTKALKRLKTTKKSALKKFSKKRNALTKTQYLTCNS
FT                 EYKRLNDRLYHSYIRRTQRNLKLNPKKFWSYIDDQKKESGLPSTMTLREKK
FT                 ASSLSSITALFRQHFSAVFTSTTLTPHHVQEAAAMVPQRSAIGPHPRISSL
FT                 TVELACDGLKCSTNPGPDGIPAVVLKSCSSSLSKPLSTIFNRSLSSGCFPS
FT                 AWKNSYIFPVFKKGAKGEVSNYRGIASLCATSKLFELIVLDFLKHHCLNYV
FT                 SETQHGFMPKRSTTTNLVSYTSFIIKTIEARKQVDAIYTDFSAAFDKINHD
FT                 VLLAKLERLGLAEPLLSWMRSYLVGRTMSVKIGNIISEHFAVPSGVPQGSH
FT                 IGPFLFLLYLNDINLVLKCFKLSYADDYKLYYVITCNEDARFLQLELDTFT
FT                 NWCKTNNMSLNADKCSVITFTRKHSIISYEYSINGIPIKRESTIKDLGVLL
FT                 DSKLCFKDHVAYITSKALKCLGLIFRSAKHFDDIYCMKTLYCSLVRSVLEY
FT                 GVVVWAPYYDSGIQLIEAVQHKFVRYALRRLPWTDPHNLPSYVDRCKLIDL
FT                 DLLEHRRKVCKASFISDVLQSHIDCPTILEMLNVDTRRRDLRSHQFFRLPI
FT                 FRTNYGYNEPISGMCRIFNQCFHAFDFHLSRVSNKNQFRKILL"
XX
SQ   Sequence 5135 BP; 1472 A; 1232 C; 893 G; 1536 T; 2 other;
     cagackwgga acgatcacaa ccacacagtg ttatacctat ttgaagctgc tattaaattc        60
     gttttttcta ctgttaatta tctcgcttaa ataagagcag tgcgttaata ttgatctaaa       120
     cgttttgttc tttataatcc gttgttggtt cagtaaaatt gtgccaaatt aagctgtagt       180
     gatataattt atcacatcat ccaagctact cacccgtcat cgatacagcc attgtttgct       240
     gtttgcagct cagacaacca caaagcgcat tgttttcact tgcccatcga ttcgacgtag       300
     aagatgtcga aaaaatgttc tgcttcccac tgtattactg gttcatctag aagcagtaaa       360
     ataacttgtg caaactgcag aaaaggattt catttgaaat gcgttggttt atcatccaac       420
     cagttcaaag cgatacgtga cttccccggc gcagaatggt tctgtccagc atgtcgaaat       480
     tcgccactcg atcttcagca gtcatcgatc aatccggtgc tcaatttgat actggatcgc       540
     cttgcgtcgg ttttacgtct ggttggagta caaatcgacg tgactcgctc gttatgtcgg       600
     gctctgagcg aaaatatccg tcgcacaagt ataaacaaca gaaactcggt acctgctcaa       660
     gcctcccagt ataggaattt tgaggatgcc ctaaacaacc ttcaactcga attttcgaac       720
     gtcttcggct ctttcatcga tgctgatgat aactctgctg ccaaacggga tcgtacaagc       780
     agcctatcgt cttcgcacct tgtatcatct aattctggaa agcgaatgag agttgatgtt       840
     ccgataagta cgtccgatat agcaaatatt atagttcctt caattgcaga cgccactgct       900
     gtgaatattg cctcctcatc ggaacccgtc gaagcttgca gttctgacat caattgcatt       960
     acatcaaccg aaaatgcctc cgccgccacc gtcacatcta tcaccacttc tgccacccct      1020
     accgcctcca ctaccgcctc aactacacca tttaccagac tagctccacc accagccaat      1080
     tcaagccact atgccacttc cactgttgct gcactaagac ccgccaccgc ctgctctgct      1140
     accctcgctg ctacgcaagc tgtttttaca actgccacac aaacttcgcc ttcgtcggct      1200
     accgcttaca aaacctccgt caccaccgaa caaagcacgc aaaccaactt ctctgcatta      1260
     ccaaagccac cacgcaccac tcaacttatt ctccaatcac caatgatctc tgctccagct      1320
     tcatcagcaa cttgtaatac aaccaacacg gtctgcaaaa atgttcttcc accagaggat      1380
     cgtcatctac cgcagtccag gccatcagag tctgtcgact tgactgtccc tcctaccatg      1440
     gtgagttcat ccggaccgac aatcccttgc tatcaatcat catgttctct agctagtatt      1500
     caaactaaga acaattgtaa ttcttacact agaccgtccc tagcaatagc tcaatctgca      1560
     ccaataatct cagtcaatag caatgataac tggtattacc tcacaaaatt tttgccacat      1620
     gaaacagaaa gcaacataat taattacatt gctcatcata cgaattgtaa cccttcacat      1680
     atagtgtgcc agaaactggt tcgagcaaat agtgacacga gaccgctatc gtttttgtcg      1740
     tttaaaatta agtttcctgt tggaattgaa aatgtcgtgc ttgccaatgg attttggcca      1800
     cagggagtta ctataacccc ttttttagac aggcgatcca acagccgcaa acctgtagga      1860
     agtcagacac aactacgctc aattcttcga aatccacgtt tactcaatca acgttcaccc      1920
     tcgcttcagt cgaattcatt gcacaatctt caaccggtga aatacctagc tccagtgcaa      1980
     cggaaacaaa taccttcgcc agggttcaaa gctccgaatt acagagtaac tttagtttga      2040
     atggcctact ttgctactat caaaacctcg gtggaattaa cacttcactt actgaatatc      2100
     ttcttgcctg ctctgacgct gcttatgaca tttacgcgtt tactgaaaca tggctcaaga      2160
     atactacacc ttcctctaca atttttggta atgtatattc agtcttccgt accgaccgct      2220
     catcattgaa tagttccaaa agtaccggtg gcggcgtgct tcttgctgtt cgttcaacgc      2280
     tcaaatgtcg tttactgcaa ccacccaact gccatgccgt agaacagttg tgggtggcac      2340
     ttcctgtttc tcatcatact ttgtacatct gtataatcta cattcctcct gatagaatca      2400
     acgatcctct actgacctct caacattcag attctctaga ttggattaca tcgcagatga      2460
     acttgactga taagattttg atcttaggag atttcaatat gtcttccata agctggacca      2520
     ctggttcctc aaactatctc tatccaaact accagcagtc caaaataaac accagtcagt      2580
     gtcagttact aaacgattac agtacggcag gtttagtcca aataagctca gtttataatt      2640
     caaaccatcg acttctagac ctttgtttta ccagcttaga acatattcag gatataactg      2700
     ttgtaaaagc ggccgctcct ctcgttaagg attgtcgaca tcatccacct atacaacttt      2760
     atttgaaaaa cagagtcccg tatgaattca aacccatttc tagcggtatc cactacaatt      2820
     tcagaaaaac tgattttatc aaaatgaatc agtttttgag ttcaattgat tgggatgaca      2880
     tgctacgagg tctaagcgtg gatacaaccg tcgaagtagt aagtttcgct gtaactcacg      2940
     cgataggttt gttcacgcct aaaacttctc ataaagatcc ttctttcccg ccttggtcca      3000
     ccaaagctct taaaagatta aaaacaacta aaaagtcagc tctgaaaaaa ttctcaaaaa      3060
     aacgtaatgc tcttaccaaa acacaatatc tgacctgcaa tagtgaatac aaacgtctga      3120
     atgatagact atatcacagt tacatccgcc gcacccagcg caacctcaaa ttgaacccta      3180
     agaagttttg gtcgtatatc gatgatcaaa aaaaggagtc aggattaccg tcaactatga      3240
     cgcttcgaga aaagaaggct tcaagtctct cttcgattac tgctttattc agacaacatt      3300
     tctcagcagt tttcacttct acaacattga caccccatca tgttcaagaa gccgcagcta      3360
     tggtacctca acgttccgct attggccctc acccaaggat ttcgtcgctc acagttgagt      3420
     tagcttgtga cgggttgaag tgctcaacaa accctggtcc tgatggaatt ccagctgttg      3480
     ttcttaaaag ttgcagctca tccctttcga agccattgtc aactatattt aaccgttcgc      3540
     tctcttctgg ctgttttccg agtgcatgga aaaattcgta tattttccca gtcttcaaaa      3600
     aaggcgctaa aggggaagtt tcgaattaca gaggaattgc ttccttgtgt gcaacgtcca      3660
     aactgtttga gttgattgta ctggattttc tcaaacatca ctgcctgaat tatgtatctg      3720
     aaacccagca tggctttatg ccaaaacgat ccactaccac taatttagtc agctacacat      3780
     ccttcattat caaaaccatc gaagctcgta aacaagttga tgcaatttat actgactttt      3840
     cggcggcctt tgacaagata aatcacgatg tcttgttagc aaaactcgag cgcctaggat      3900
     tagccgaacc tcttttaagt tggatgagat cctacttagt aggacggacg atgtcagtta      3960
     aaataggaaa tataatttct gaacactttg ctgtaccatc gggagttcct caaggaagtc      4020
     atattggccc gtttttgttc ctactctact taaatgatat taaccttgtc ctcaaatgtt      4080
     tcaaactttc ttacgccgat gattataagc tttattatgt cataacatgc aatgaagatg      4140
     ccaggtttct tcagttagaa cttgatacgt ttacgaactg gtgtaaaaca aacaacatga      4200
     gtctgaatgc agacaaatgt tcagtgatta ccttcactcg aaaacactca atcataagct      4260
     acgaatattc cattaatgga atacctatta aacgagaatc tactatcaaa gacttagggg      4320
     ttctgctaga ttccaagctt tgcttcaaag atcatgtagc gtatattaca tcaaaagcgc      4380
     taaaatgctt gggtttgatc tttcgatccg ccaagcactt cgatgacata tactgcatga      4440
     aaactctcta ctgttctctt gtccgctctg ttctggagta cggtgttgta gtgtgggctc      4500
     catactacga ttctggcatt caactaatcg aagcagttca gcataaattt gttcgttatg      4560
     ctcttcgtcg tcttccttgg accgatccgc ataacttgcc cagttatgtg gatcgttgta      4620
     aattgatcga tctcgatctt ttagaacatc gtcgtaaagt ttgcaaggct tcgtttattt      4680
     ccgatgttct tcaatctcat atagattgtc caactatttt agaaatgtta aatgttgata      4740
     ctcgtcgtcg tgatcttcgt tctcatcagt tcttccgtct tccaatattt cgtacaaact      4800
     atggctataa tgagcctata agtggtatgt gtcgcatttt taatcaatgt tttcatgcgt      4860
     tcgattttca tttgtcccgt gtctccaaca aaaaccagtt ccgtaaaatt ttgttgtaac      4920
     attatgatta agttagtaga tgtaaacgat tagctttaag atctgtattg ttgtatagtg      4980
     tactttagcg ttaagaattg tatcattggg aatttgtatt ctgttgatat gaaaagaaga      5040
     ggaggtttta tgcccatttg agaaagagct tttaagaaag ctctactcaa acgggctttt      5100
     ccctgctcca ataaagataa agataaagat aaaga                                 5135
//
ID   CR1-75_AAe  repbase;    DNA;    INV; 5464 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-75_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5464
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1163-1163 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           355..1431
FT                 /product="CR1-75_AAe_1p"
FT                 /translation="MEKCCVCSNNLDSGRTIICSGSCGRFFHFDCVGLNKS
FT                 QFTAWTSKLGFFWFCDSCRRSFDAADYDREKTIMKALRELLIRIDSMDTRI
FT                 GSFGENLRRINKTLFDVKQNRRSSTSSQHQASFLRSIDEITLDDVIDDPIN
FT                 RSRSCEDTSFFEVLDEVNSSIALPSDKFVVGANKRVQIIANPCGSGNNRSS
FT                 VDVSTPAAPARQSNSQNKRVPASRQLTELDSNHADFASDRNLVANTERTHE
FT                 SSSKTRPQSMSLKVANSQTPHDQESFYVTPFAPDQNEEEIKQYVCEISNVN
FT                 SALVHVVKLVPRGKNANDLSFVSFKVTVCKTVSTVVGDPWYWPDGITVRTF
FT                 EPNVKNSTATRLPINT"
FT   CDS           1347..5243
FT                 /product="CR1-75_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVLARWNNRSHIRTQCKKQHSYSSPNQHIIEPPALSV
FT                 DRLSDEFASLVVSSEFQACHFAALPVSSGKTNSGICPAEAGKDAAPILNRE
FT                 PFFQSLNRSAANIRCCEDYSIQRSSELVSFDNITLPTDRSNIELHSEYRAF
FT                 SVDCQTRHFAALPVSSGKFNSGVCLAEAGRNTAPNFNRDPPFQPIGRSAIH
FT                 VNRTDDHSRYPVETPTYHSAALPVLSGKFVPSGICPAEAGKDATPFLNRVP
FT                 LFQPSDHRYIEPVHNFVPSEDPRICHFAALPVLSGKFDSGICLAEAGRDAT
FT                 QNLNRGPNFQLNTCSTAHANLPXTVLSGPSINDYDITTPNSRETANRGLLV
FT                 YYQNIGGINTRLSDYRLACSDSCYDAYAFTETWLNSDTISSQIFDPSYSVF
FT                 RLDRNSQNSRKNSGGGVLLAVKAKLTARQLSVPNSESVEQIWVAITFQTHT
FT                 LFICVIYIPPDRSQDMEVIDQHIGSLKWISDKMKIKDSLMILGDFNFPGIQ
FT                 WKLSTSNYLYPDVTRSSISLSGNKLIDNYSLERVSQLNFVVNDNGRLLDLC
FT                 FGSIDGGANFSVMKAPSDLVKPTIHHPSLLIEIVSVSPCIFIDPVETLFYD
FT                 YKNGDFCGMNNFFSNINWLDYINQNLDSSLSAFSSIVLYAIDQFIPTRSRK
FT                 APINPPWSNNHLKQLKRLKRSTLRKYTRFKTQRCKRNYHAANCRYKRLNKK
FT                 LFYSHQMKVQQNLRQNPKSFWNYVNEQRKESGLPTVMFKGNIERSTTDGIC
FT                 DLFLNQFSSVFTTEILDESQVFLAAENVPVHSPVGDHPFIEAEAINKICSS
FT                 LKASTSCGPDGIPAMVLKKCSANLSMPLSCLFNLSLQVGKFPDGWKKSYVF
FT                 PVFKKGNKRDVSNYRGIAALCAVSKLFEKVVYDFLLHNCHNFISEHQHGFM
FT                 PKRSTNTNLLTYTTFIAQALQEGKQVDSIYTDFSAAFDKINHQITIAKFER
FT                 LGFAGSFLCWLKSYISGREMAIKVGDSISPYFHVTSGVPQGSHLGPLIFLV
FT                 YLNDVHFTLRSLKLSFADDFKLFYVVNDVCDAHFLQSQLDVFTVWCEKNRM
FT                 DLNAAKCSVISFSRKRSTLLFNYKVGTTVLKREYVVKDLGVLMDSRLTFKE
FT                 HVAFVTSKASKILGFIFRVAKHFKNIQCLKSLYCSLVRSVLEYSSVVWAPY
FT                 YQNSIMRIESIQHKFVRFSLRHLPWNNPLNLPSYEQRCNLIGLELLSVRRE
FT                 ISKALFISDLLQTQIDCPHLLSLLNLNIPYRPLRSSAFLYIRGARTNYGHH
FT                 EPFTSMCRSFNRCFHDFDFHLSRRILRNRFSSILSSPT"
XX
SQ   Sequence 5464 BP; 1507 A; 1227 C; 1063 G; 1666 T; 1 other;
     tggcaacact ggtttgcacc gtttttgttt gtcttctagc tctcgatatt ttctatgttt        60
     acaccgtgta aattgcatcg ttaattgccg ttgcccattg attacgtcgg attgcagaag       120
     tttgtttgtg tattcattgt gtgtgctcgc gttccggtgc cgcaaagtga caatattgtg       180
     atagtgtgat tgcagttgtt attattcaca tctactacgc ccccattcgc tcgatttttc       240
     ttgaagcgac atctggtaga aaaaatcaga aacttatttg gatacaagcg acacgcaagt       300
     tgcatgcaag tttccaacca acgtttttac ccagtgggac attagacgac caagatggaa       360
     aaatgttgtg tctgctcaaa caacttggac tctggaagga cgataatatg cagtggatca       420
     tgtggtcggt tttttcattt cgattgcgtg ggcttgaaca aatcgcaatt cacggcgtgg       480
     acttcgaaac ttggattctt ttggttctgt gactcttgcc gcagaagttt tgatgcggct       540
     gattatgaca gagagaaaac cataatgaag gctttacgcg aattgttaat tcgtatcgat       600
     tccatggaca ctcgaattgg aagcttcggc gaaaatctcc gtagaatcaa caaaacgctg       660
     tttgacgtca agcaaaatcg gagatcatca accagttcac aacatcaagc cagtttttta       720
     cggagtattg atgaaatcac tttggatgat gtgatagacg atccaattaa tcgatcgaga       780
     tcatgcgaag atacctcttt tttcgaggtt ttggacgagg tcaacagctc tattgctctt       840
     ccttcagata agttcgtcgt tggagcaaat aaaagagtgc agataattgc aaatccgtgt       900
     ggatccggca ataataggag ttcagttgat gtttccactc ctgctgctcc tgcaaggcaa       960
     tcaaattctc aaaacaaacg agtacctgct tcacgtcagc tcactgaact tgatagtaat      1020
     catgctgact tcgccagtga taggaatcta gtcgcgaata ctgagcgcac gcatgaatct      1080
     tcgtctaaaa ctagaccaca gtccatgtct ctgaaggttg caaactcgca gacacctcac      1140
     gatcaggaat cgttctacgt tactccattc gcaccagacc aaaacgaaga agaaattaag      1200
     cagtatgtct gtgaaatttc taatgtcaac tctgcattag ttcatgtggt taaattagta      1260
     ccacgcggaa agaatgccaa cgacctttcc ttcgtatcat tcaaagtgac cgtctgtaaa      1320
     acggtttcaa cagtggtcgg tgatccatgg tactggccag atggaataac cgttcgcaca      1380
     ttcgaaccca atgtaaaaaa cagcacagct actcgtctcc caatcaacac ataatcgagc      1440
     cacctgcttt atcagtcgat cgtttgagcg atgaatttgc gtcgttagtt gtttccagcg      1500
     aatttcaagc atgccacttt gcagcacttc ctgtctcgtc aggtaagact aacagtggta      1560
     tatgtcctgc cgaagcaggg aaggatgctg caccaatcct gaaccgagaa ccattttttc      1620
     agtccttaaa ccgctctgcc gccaatatcc gttgttgcga agactactcc atccagcgct      1680
     catccgagct tgtgtcattt gataacatca cccttcctac tgatcgttca aacatcgagt      1740
     tgcattctga ataccgtgca ttttccgttg actgccaaac acgccacttt gctgcgcttc      1800
     ctgtttcgtc aggtaagttt aacagtggtg tatgtctcgc cgaagcaggg aggaatactg      1860
     caccaaattt caatcgagat ccacctttcc agccaattgg tcgttctgcc attcacgtaa      1920
     atcgaaccga tgaccattca agatatcctg ttgaaactcc cacgtaccac tctgctgcac      1980
     ttcctgtttt atcaggtaag tttgtgccca gtggtatatg tcctgccgaa gcagggaagg      2040
     atgctacccc ttttctgaat cgagtaccgc ttttccagcc ttctgatcat cgctacattg      2100
     aacctgttca taactttgta ccgtctgagg acccaagaat atgccacttt gcagcacttc      2160
     ctgtcttgtc aggtaagttc gacagtggta tatgtcttgc cgaagccggc agggatgcta      2220
     cacaaaattt gaatagaggt ccaaatttcc agctcaacac atgctctact gcccacgcaa      2280
     atctacccak cactgtgctt tccggaccat cgataaatga ttatgacatc acgacaccga      2340
     attccagaga aactgctaac cgtggcttgt tggtatatta ccaaaatatc ggcggaatca      2400
     acactcgttt atccgactat cgtctcgcct gctccgattc ctgttacgat gcgtatgcct      2460
     tcacagaaac atggttaaac agtgatacca tctctagtca gatctttgat ccatcttata      2520
     gcgtttttcg tttagatcgt aactcccaga acagtaggaa aaactccggc ggtggtgtac      2580
     tattggcagt caaagcaaaa cttactgctc gacagttatc ggttcctaat tctgaatctg      2640
     ttgagcaaat ttgggtagca ataactttcc aaactcatac cttgttcatc tgtgtcattt      2700
     acattcctcc cgatcgctcg caggatatgg aagtaattga tcaacacatc ggctcgctca      2760
     agtggatctc agataagatg aaaattaagg atagtttgat gatacttggt gattttaatt      2820
     ttcctggcat ccaatggaaa ctcagtacgt caaattatct atatccagac gtcactcgtt      2880
     cttcaatcag cttatccggt aacaagctaa tcgataacta tagcttagaa cgtgtttctc      2940
     agttgaactt cgttgttaat gataatggtc ggctattgga tctttgtttt ggaagcatcg      3000
     atggaggcgc aaatttttca gtcatgaaag ccccttctga tcttgtgaaa ccaacgattc      3060
     atcatccctc tctgctaatc gaaatagtta gcgtctcacc atgcatattc atagatccag      3120
     ttgaaacgct tttctatgac tacaaaaatg gtgacttttg cggtatgaac aactttttct      3180
     ccaacatcaa ctggcttgat tacatcaatc aaaacctcga ttcatctttg agtgcgttct      3240
     ctagtattgt attgtatgct atcgaccaat tcattccgac gcgttctcgt aaagccccaa      3300
     tcaacccacc gtggagtaac aatcatctaa aacagctgaa aaggttgaaa agatcaactc      3360
     tgcgaaagta tacgagattc aaaacccaac gttgtaaaag gaactatcac gctgcaaatt      3420
     gtcgctacaa acgcttgaat aagaagctgt tctattcgca ccaaatgaaa gttcaacaaa      3480
     atctacgtca aaatcctaaa tcgttctgga actatgtcaa cgagcaacgg aaggaatccg      3540
     gtctacccac ggtcatgttt aagggtaata ttgaacgctc cactaccgat ggtatttgtg      3600
     atcttttctt aaaccagttt tcaagcgttt tcaccacgga aattttggac gaatcacaag      3660
     ttttcttagc cgctgaaaat gtacccgttc attcaccagt aggtgatcac ccattcatcg      3720
     aagccgaagc aattaacaaa atttgctcct ctttgaaagc atcaactagc tgcggtccag      3780
     acggtattcc tgcgatggtt ctgaaaaaat gctctgccaa tctttcgatg ccattatcgt      3840
     gtctcttcaa cttatcactt caggttggta aattcccaga tggttggaag aagtcgtatg      3900
     tcttcccggt ttttaaaaaa ggaaacaaac gtgatgtcag caactatcgt ggtattgcag      3960
     ctctgtgtgc cgtttcgaaa ttgttcgaga aagtggttta cgacttttta ctccacaatt      4020
     gtcataattt tatttcggag catcaacatg ggttcatgcc gaaacgctcg acgaacacca      4080
     acttgcttac ctacacgact ttcattgcac aagcacttca agaaggcaaa caagtagact      4140
     cgatatatac ggatttttcg gcggccttcg ataaaatcaa tcaccagata accatcgcca      4200
     aatttgaacg tcttggattt gctggttctt ttctttgctg gttgaaatct tatatcagcg      4260
     gccgtgaaat ggctattaaa gtcggtgatt ccatttcacc ctacttccat gtaacttcgg      4320
     gggtgccaca aggtagccac ttagggccac tgatattttt agtgtactta aacgatgtac      4380
     attttacact caggtcattg aagctttctt tcgccgatga tttcaaattg ttttacgttg      4440
     tgaatgatgt ctgcgatgct cacttcctgc agtcccaact tgatgtgttc actgtttggt      4500
     gtgaaaagaa tcgcatggat ctcaacgccg ctaaatgctc tgtgatatcg ttctctcgga      4560
     aacgctctac attattattt aactataaag ttggtactac tgttctcaaa agagaatatg      4620
     tggttaagga tttaggtgtg ttaatggact caagattaac tttcaaggag catgtcgcct      4680
     tcgttacctc caaagcctcg aaaatacttg gtttcatatt ccgtgtagca aaacatttca      4740
     aaaacattca atgtttaaaa tctttatact gttcattagt gaggtcagtt ttagaatact      4800
     catcagttgt ttgggctcct tattatcaga atagtatcat gcgtatcgaa tcaatccaac      4860
     acaagtttgt acggtttagc ttgcgtcatc tgccatggaa caatccactg aatttgccca      4920
     gttacgaaca gcgttgcaat cttattggtc tagagttact gagcgtacgc cgtgaaatct      4980
     caaaagcact attcatttct gatcttttac aaacacaaat tgattgtcca catttgttgt      5040
     cgctccttaa tcttaatata ccttaccgcc ctcttcgctc tagtgcattt ctttatattc      5100
     gtggtgctcg cactaattat gggcaccacg aacctttcac cagcatgtgt cgttctttta      5160
     atcgttgttt tcatgatttt gattttcatc tctctcgccg cattcttcgt aatagattca      5220
     gtagtattct ctccagtcca acttaacata ttgcatcaga tgaattttgt agccgtacat      5280
     tagttttact atagaaataa gaataattta tattactagt attaagcaaa aattgtatca      5340
     tttggagtgt aactttctgt tggtactaaa agatgaggag gttttgcgcc catttgagga      5400
     agagttatct cagctcaact caagtgggct tttccctgct ccaaaaaaga aataaagaaa      5460
     taaa                                                                   5464
//
ID   CR1-76_AAe  repbase;    DNA;    INV; 4089 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-76_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4089
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1164-1164 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           226..1014
FT                 /product="CR1-76_AAe_1p"
FT                 /translation="MAVSVCCSCAGELEKTEEIVCNGFCRSSFHLKCVKQT
FT                 AATRDIVAKCSQLFWMCNACTKIMANSTFRNALSSANNAMEAIHAEQNNAL
FT                 VELRQEMEQNTEKINMILRQLPTALQERTGRKTSTSSTSVPSSRRKRPRID
FT                 EDAIQTEIRETEGTKEIDSSVMIPLADRTTSESKFWLYLSGFNPNATDDDI
FT                 RSLVQRNLNTSDAVDVRKLVPKGKNLDELSFVSFKVGIDSQLKDMALVSST
FT                 WQKGIIFREFDFHPRATFQFQQ"
FT   CDS           923..4018
FT                 /product="CR1-76_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RIWRWYPLLGRRVSYSANSISILGLRFSFNSNSSNYV
FT                 ETFFSPIHATCCQHVDIASTNATTPIALQYPDHVNSNTDGKLNRSTPSITV
FT                 YYQNVRGLRTKTNELFAALSVCDYDIVVLTETWLNKNVLDAELTDEYVIHR
FT                 CDRSASTSQCLRGGGVLIGVKKNIRCNVFTINGADRLEQVVIRASVGSVSL
FT                 VVCAVYLPPNTELGLYEQHAACINELHRKTSIHDRIVVLGDYNLPLLRWCF
FT                 DNDVGCFIPTNASSEQEISLVENVIASGLQQVNYLTNENGRLLDLAFVNCM
FT                 TICEIIEPPLPLMNVDRHHQPFVMVIEDQRTTLENENNSNVVYDFNHCDFD
FT                 VLNVAISQINWREILNSGTLDEAVDSFYGGLDSIFRQHVPLKRQSRQHGSR
FT                 RPWWNGELRNLRNRLRKARRRYFRLRNDDSKAVVRDLECQFNSLNASRFRS
FT                 YISRLERNIKDDPKQFWTLIRNRTSTKAIPHTVNYLGDTSSTPLESASLFA
FT                 SFFQSVLSNNSPPLVESYLNRLQSFDLNLPATAFTERDVCIKLREVDGCKG
FT                 PGLDGLLPYFIKQCSSSLAVPATLLFNRSLEESTFPSRWKEASITPIHKTG
FT                 NVHDVTNYRAISILNCLPKVFESMVLDFLYPAVRNIIAVDQHGFMKKRSTT
FT                 TNLMSYVSLLVDLIDKRQQIDAVYIDFSKAFDRVPHQLAIEKLKRIGFPDW
FT                 LTKWFSSYLSKRSASVKLGTVKSDPFCISSGVPQGSHLGPLLFVLFVNDLC
FT                 SELESLKSMYADDMKIFRVVSSPVDCCALQADVDKVLIWCERNGMEVNIQK
FT                 CNIITFSRIRAPILFEYSMQSCTLKRVSTIKDLGITLDNKLRFNEHISSVI
FT                 AKAYAVLGVIIRNTRDFNDIYCLKTLYISLVRSLLEYGVVVWSPYHAVQID
FT                 RIERVQKCFVRFALRRLPWRNRFRLPAYENRCALISLPTLATRRTYLQRLF
FT                 VFDLLENNVDCPDILEKLRFNAPGRTIRRTDFFRRSAHRTQYGQHNPLDVC
FT                 CQVFNDVYHMYDFNLCKSAFKSRISN"
XX
SQ   Sequence 4089 BP; 1143 A; 883 C; 890 G; 1173 T; 0 other;
     cacaccataa ggtaaagtta aacgttgatt atctgttatg atcgttttct aatcagtgtt        60
     ttcttgtgtt tcatatacct gattattgca atcgctgttt tctccgtgct gatcaacttt       120
     ttccccgtgc ggtacatctg gagtattgct gtttccgcgc cagaataagt gattaaatta       180
     aggaatttta tttcacatcg ttttccgtat tcaagtacac aaacaatggc ggtttcagtt       240
     tgttgttcat gcgccggcga gttggaaaaa actgaagaaa tagtctgcaa tggtttctgt       300
     aggtcgtctt tccatcttaa atgcgtgaag caaactgctg ccactcgtga tattgtcgcc       360
     aagtgctccc aactcttctg gatgtgcaat gcttgcacca aaattatggc aaactctact       420
     tttcgcaatg cactatcgtc agctaataat gctatggaag ccatccatgc tgagcaaaac       480
     aatgcacttg tcgagctgag acaggagatg gagcaaaaca cagaaaaaat caacatgatt       540
     ctacgtcaat tgcccactgc attgcaagag cgcactggca gaaagactag cacgtcaagc       600
     acgtctgtcc ccagcagccg ccgtaaacgt ccccgaattg atgaagatgc gatccagacc       660
     gaaatacgcg agaccgaagg aaccaaagaa attgattcaa gtgtgatgat accgctggca       720
     gataggacga ctagtgaatc caaattctgg ttgtatctat ctggcttcaa tccaaatgct       780
     actgatgatg atattcgaag cttggtgcaa cgaaatctga ataccagcga tgccgttgac       840
     gtgcgaaagt tagttccaaa aggcaaaaat cttgacgaac tttccttcgt gtcgtttaag       900
     gttggtatcg actcgcaact aaaggatatg gcgctggtat cctctacttg gcagaagggt       960
     atcatattcc gcgaattcga tttccatcct agggctacgt ttcagtttca acagtaacag      1020
     cagtaattat gttgaaacct tcttctcgcc gatacatgcc acttgttgtc aacacgttga      1080
     tatcgcctca acgaatgcta ctactccgat cgcgctacaa tatcccgatc acgtgaattc      1140
     gaataccgac ggcaaactga accgatctac gccctcgatc acggtttact atcagaatgt      1200
     gagaggatta agaaccaaaa caaacgaatt atttgcagcc ttgtctgttt gcgattacga      1260
     tatagtggtg cttacagaaa cttggctaaa taagaatgtg ttggatgccg agctaactga      1320
     cgagtatgtg atacaccgtt gtgatcgtag tgcgtccact agccagtgcc tccgtggtgg      1380
     tggggttctg attggtgtca aaaagaatat tcgatgcaat gttttcacta tcaacggggc      1440
     tgatcgtcta gaacaggtag tcattcgagc tagtgttgga agcgtatcac ttgtggtgtg      1500
     tgcggtttac ctccctccca atactgagct tggattatat gaacaacatg cagcgtgcat      1560
     caatgaactt cacagaaaaa cttccattca tgacaggatt gtagttctgg gtgactacaa      1620
     tttgcctctt ctccgctggt gtttcgataa cgacgtcgga tgcttcattc caacgaatgc      1680
     atcctccgag caggaaatct ctttagttga gaacgttatc gcgtctggtt tacaacaagt      1740
     aaactatcta acaaatgaaa acggaagact gctcgattta gcttttgtga attgcatgac      1800
     catatgtgaa ataattgagc ctcctctgcc cttaatgaat gtggaccgtc atcatcagcc      1860
     gtttgtgatg gtcattgaag atcaacggac tacgctcgag aatgagaaca actccaatgt      1920
     agtttatgac tttaaccatt gcgattttga tgtattgaat gttgcaattt cacaaatcaa      1980
     ttggcgagag atcttgaact ctggtacttt ggacgaagct gtggatagtt tctatggcgg      2040
     attggattct atttttcgac aacacgttcc tttgaaaaga caatcacgac agcatggaag      2100
     cagacgacct tggtggaacg gagagttgcg gaatcttcga aaccggctac gtaaggctcg      2160
     tagaagatac tttcgactga ggaatgatga cagtaaagca gtggtgcgcg acttagaatg      2220
     ccaattcaat tctttaaacg catcacgctt tcggtcgtac atttcccgac tagaaagaaa      2280
     tataaaggat gacccgaagc agttttggac tttaattcga aaccgtacat ctacgaaagc      2340
     aattcctcac accgttaact atcttggtga tacatcttca acgccgttgg agtctgcaag      2400
     tctttttgcg tcgttctttc aaagtgtgct aagtaataac tcaccacctt tggttgaatc      2460
     gtacctaaat agattgcaga gtttcgacct caacttgcct gcaactgcct tcactgagcg      2520
     cgacgtgtgc atcaaactga gagaagttga cggttgtaag gggcctggat tggatggatt      2580
     attgccgtat ttcatcaaac agtgttcttc ttcgttggct gtaccggcta cactactctt      2640
     caatcgttcg ctcgaagaaa gcacatttcc atcgagatgg aaggaagcgt cgatcacgcc      2700
     aattcacaaa actggaaatg ttcatgatgt tacgaactac agagcaattt ctatcctgaa      2760
     ctgtctgccg aaagtttttg agagtatggt attagatttt ctttacccgg cggtgcgtaa      2820
     catcattgca gtcgatcagc acggatttat gaaaaagcgc tcaactacaa caaacctcat      2880
     gagttatgtg tctttactgg tcgatctaat agataaacga cagcaaatcg acgcagtata      2940
     catcgacttc tcgaaggctt tcgaccgtgt cccacaccaa cttgcgatcg aaaaacttaa      3000
     gcggattgga tttcctgatt ggctgaccaa atggttttct tcgtatctca gtaaacgctc      3060
     tgcttccgta aagcttggaa cagttaaatc ggatccgttt tgcatttcgt cgggtgttcc      3120
     tcagggaagc catctcggtc ctcttctctt cgtactcttc gtgaatgatc tttgcagcga      3180
     attagaatcc ctgaaaagca tgtacgctga cgacatgaaa atttttcgtg tggtgtcctc      3240
     tccagtggat tgctgtgcac tacaggcaga tgttgacaaa gttctgatct ggtgcgagag      3300
     aaacggaatg gaggttaaca tacaaaaatg caacatcatt accttttcac gaatccgcgc      3360
     tccaattctt tttgagtatt cgatgcaaag ctgtacgttg aaaagagtct caaccattaa      3420
     agatctaggt atcaccctgg acaacaaact gcgtttcaac gagcacatat cgtcggtgat      3480
     agctaaggcc tacgcagtac tcggtgtaat catcaggaac actcgggatt tcaatgatat      3540
     ttactgcctg aaaacattat acatctcgtt ggttcgcagc cttttggaat acggcgttgt      3600
     ggtctggagc ccgtatcacg ctgtgcagat tgaccgcatc gaacgtgttc agaaatgctt      3660
     tgtcaggttt gcacttcgta gactaccatg gcgtaataga tttcgactcc ctgcttatga      3720
     aaaccgatgc gcactcatca gtcttccgac gttggcaact aggagaacat atcttcagag      3780
     gcttttcgtg ttcgacctac tggagaacaa cgttgactgt ccggatattt tggaaaagct      3840
     tcgtttcaat gctccaggta gaacgatacg gcgtactgac ttctttcgac gatcggcaca      3900
     tcgcacacag tatggacaac acaacccact cgatgtttgc tgccaagttt ttaatgatgt      3960
     gtatcacatg tatgatttta atttgtgtaa atctgcgttc aaatctagaa taagtaatta      4020
     agttttagtc tgtgcgatgt taaaatatcg aagactgtaa ataaataaat aaataaataa      4080
     ataaataaa                                                              4089
//
ID   CR1-77_AAe  repbase;    DNA;    INV; 3533 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-77_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3533
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1165-1165 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..431
FT                 /product="CR1-77_AAe_1p"
FT                 /translation="NIVAYVSKKTRCSPAQVRCSKLIRQDRSQPITFISFK
FT                 LSVPKAFESTIVANSFWPEGVSITPFLERRPNAYRRKKLFSPQPITSLPRH
FT                 QSHQVYGLQMKPSPNNAPYVQQPPTPILRQSHVLHNNRPQHLSLPVRNRFQ
FT                 SSLV"
FT   CDS           158..3316
FT                 /product="CR1-77_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="FLARRSLDYSFFRTASQCVQTQETVFTSTNHEFTTSS
FT                 VTSSLRSSNETISKQCTLRPTTTNSHPSSITCSPQQPASTSKPASSKSVPI
FT                 IPCLATVLTCYYQNVGGINTSVHSYMLACADASYDLIAFTETWLDERTLST
FT                 QIFGNCYVVYRVDRNEQNSRKTRGGGVLLALRSSLNCRQLYPPNSSVEQVW
FT                 ASINLSTYMLYVCVIYIPPDKVNDPVVIDAHLESLTWISSQMELSDKIVVI
FT                 GDFNLAGITWNTGSSHLFPDPSKSTIALSSINLLDGYSTANLCQINNVPNT
FT                 NGRLLDLCFISEDFLNNDEIHLTAAPISLVKSCTHHPALHISISLPQTYTY
FT                 IDTTESIYYDFGKTNFAAMTEFLAGFNWDSVLVGLDTHTAAKAFCDIMSYA
FT                 IDQFTPKRQKQTKTYPPWSNPCLKRLKSAKRSCLKKYSKNRTNLLRSRYIT
FT                 SNRKYKVLNEALFSAYQHRVQLNLKNNPKKFWNYIDEQRKESGLPSCMKLG
FT                 DTEVSTVPDICHAFQKHFRSVFSDEMLDDLEVSKAASNAPNLPTVGNHPTV
FT                 SSIMLETAIKSLKSSSNPGPDGIPSLILKKCFSVLQFPLLHIFNLSLRCGS
FT                 FPEIWKSSYLFPVFKKGCRRVISNYRGIAALCATSKLFELVVMDFITHNCS
FT                 SYISETQHGFMPHRSTTTNLVSYTSFITRCIEKGLQVDAIYIDLSAAFDKI
FT                 NHKIAVAKLERLGFTGSFLSWLQSYLIGRSMSVKIGECLSSPFQVTSGVPQ
FT                 GSHLGPVIFLLYLNDVNLSLKCFKLSYADDFKLYYVINDHNDADFLQCQLD
FT                 VFVDWCKTNRMVMNATKCSIISFTRKHRTIMSDYHVSDHTLERVSSIKDLG
FT                 VIVDSNLSFRDHVSYVVGKASKSLGFIFRAGKHFSDVYCLKTLYCSLVRSN
FT                 LEYAAIVWSPQYQNSILRIERIQRKFIRFTLRNLPWTDPSNLPEYKDRCQL
FT                 INLNLLSTRRNLAKLLFTCDVIQSRVDCPELLEKFNFDIHRRALRSHTFFR
FT                 LPLCRTNYGRNEVVNSMCRLFNQYCNVFDYNLSRAVLKTRFAVVLGV"
XX
SQ   Sequence 3533 BP; 1013 A; 792 C; 631 G; 1097 T; 0 other;
     ataatattgt ggcctatgtt agtaagaaaa cgcgttgtag tcctgctcaa gtccgttgct        60
     caaagcttat acgacaggac agaagtcaac ctatcacatt tatatctttt aagttaagtg       120
     ttcccaaagc tttcgaaagc acgattgtcg caaatagttt ttggccagaa ggagtctcga       180
     ttactccttt tttagaacgg cgtcccaatg cgtacagacg caagaaactg ttttcacctc       240
     aaccaatcac gagtttacca cgtcatcagt cacatcaagt ttacggtctt caaatgaaac       300
     catctccaaa caatgcaccc tacgtccaac aaccaccaac tcccatcctt cgtcaatcac       360
     atgttctcca caacaaccgg cctcaacatc taagcctgcc agttcgaaat cggttccaat       420
     catcccttgt ctagcaaccg ttttaacatg ctattaccaa aacgttggtg gcattaatac       480
     atccgtacac tcttatatgc tggcatgcgc cgatgcctcc tatgatctca tcgcctttac       540
     tgagacttgg ttagatgaga gaactttgtc cacgcaaatt tttggaaact gctatgttgt       600
     ctacagagtc gatcgaaatg agcaaaatag ccgtaaaact cgcggcggtg gtgttttatt       660
     agctctacgg tcatcgctaa actgtcgtca gctttacccc cccaacagct cagttgaaca       720
     agtctgggcc tcaatcaacc tatcgactta catgctctac gtttgcgtca tatacattcc       780
     acctgataaa gtgaacgatc ctgtcgtcat tgacgctcat cttgaatctc ttacctggat       840
     ttcttctcaa atggaactca gcgacaaaat tgtagtcatt ggcgatttca atttggccgg       900
     cataacatgg aataccggct catcgcatct ttttcctgat ccatcgaaat ctacaattgc       960
     actttcatcg atcaacctgc ttgacggata cagtacagca aatttatgcc aaatcaacaa      1020
     tgtaccaaac acgaatgggc gccttttaga cctctgtttc atttcagagg actttttaaa      1080
     caacgatgaa atccacttga cagctgctcc catttctcta gttaaatctt gtacccacca      1140
     ccctgctctg cacataagca tttctctgcc acaaacatat acatatattg atacaacaga      1200
     aagtatctac tacgattttg gaaaaacaaa ttttgctgct atgactgaat tccttgctgg      1260
     attcaattgg gattcagttt tggttggtct cgatactcac actgctgcta aggcattttg      1320
     tgacattatg tcttatgcta tcgatcagtt cacccctaaa cgacagaagc aaacaaaaac      1380
     ctatcctcca tggtccaatc catgtctcaa gaggttaaag tcagccaaac ggtcttgtct      1440
     taaaaagtac tctaaaaatc gaacaaattt gcttagatca cgttacatca cttccaatag      1500
     gaaatataaa gtgttgaatg aggcactttt ctccgcttac cagcatcgtg tacaactaaa      1560
     tcttaaaaac aacccaaaga agttctggaa ttatatcgac gagcaacgaa aggagagcgg      1620
     cctaccatca tgcatgaagc ttggagatac agaagtgtct actgttccgg atatctgtca      1680
     cgcatttcag aagcatttcc gcagcgtttt ttcggatgaa atgttggatg atctagaagt      1740
     ctcaaaagct gccagcaatg cgcctaacct cccaactgtt ggcaatcatc ctaccgttag      1800
     tagcataatg ctggagacgg ctataaaatc actcaaatct tcctcaaatc ctggcccaga      1860
     cggcatccca tctcttattc tgaagaagtg cttttcagtt cttcagttcc ctttgcttca      1920
     catcttcaat ctgtctttac gttgtggatc gtttccagaa atctggaagt cgtcgtattt      1980
     atttcctgtc ttcaaaaagg gatgcagacg tgtcatctca aactatcgtg ggattgccgc      2040
     cttgtgtgcc acttccaagc tattcgaatt ggttgtcatg gacttcatta ctcacaactg      2100
     ttcaagttac atttcggaaa ctcaacacgg attcatgccg caccgatcaa ccacaacgaa      2160
     cctggtatcg tatacatcct ttataacccg ctgcattgaa aaaggacttc aagttgatgc      2220
     aatttacatc gatctctcag cggccttcga caaaattaac cacaaaattg cagtagccaa      2280
     actagagaga ttgggcttca ctggttcctt cctttcctgg ttacagtcat atttgatcgg      2340
     tcgttctatg tctgttaaaa tcggagaatg cttatcatca ccatttcaag taacatcagg      2400
     ggttcctcaa ggaagccatt taggacctgt aatttttctt ctttatctta acgatgtaaa      2460
     cctgtctctc aaatgtttca agttatctta tgctgatgat tttaaattat actacgtcat      2520
     caacgaccac aacgacgctg attttttgca atgtcagctg gatgtttttg ttgattggtg      2580
     taagacgaac aggatggtca tgaatgcgac taaatgttca atcatttcat tcactcgtaa      2640
     acatagaact ataatgtcgg attaccatgt ttctgaccac acattggaac gcgtaagttc      2700
     aatcaaagac cttggtgtca tcgtggacag caacctgtca ttccgtgatc atgtctcata      2760
     tgttgttggt aaagcttcca agagtctagg tttcattttt cgtgccggta aacatttttc      2820
     tgatgtttat tgccttaaaa ctttatattg ttctttggta cgatctaatc tcgaatatgc      2880
     agctattgtt tggtccccac aatatcagaa cagtatttta cgtattgaac gaatccaaag      2940
     aaagtttatt cgatttacgt tacgaaacct accgtggaca gatccctcaa atttaccaga      3000
     gtacaaagac aggtgtcagt taattaacct taatttactc tccactcgtc gaaaccttgc      3060
     caaacttttg ttcacctgtg atgtgataca gtctagagtt gattgtcctg aactgttaga      3120
     aaagtttaat tttgatattc atcgtcgcgc actccgttct cacacatttt ttcggctacc      3180
     tttgtgtaga accaattacg gtagaaatga agttgtaaat agtatgtgtc gtttgtttaa      3240
     tcagtactgt aatgtctttg attataatct atctcgtgca gttttgaaga ctcgctttgc      3300
     tgtagtgtta ggtgtctaga ataagattcg atgtttaaaa agtgtatgta aaattaagta      3360
     ttagattaag ctacgtcttt gtatcatttg gaattgtgtt ctgttgatat gaaaagacgg      3420
     gtaggttttg tgcctatttg agaaagaggt tcaaattgtt ggtctctact caaacgggtt      3480
     tttccctact cctaaaaaat aaatgaaaat gaaaataaat gaaaaatgaa aca             3533
//
ID   CR1-78_AAe  repbase;    DNA;    INV; 4219 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-78_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4219
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1166-1166 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           282..1088
FT                 /product="CR1-78_AAe_1p"
FT                 /translation="MNYTTIDSSNNLPVTSQNIRDAGILAPGHTAQSTSNL
FT                 LPGTTPVSTAHKSQNSREELCDKVNDHSTKSSSIANHSERPPTLAIAVPSL
FT                 ASSSIDNDNWYYITRFKPHETEENVIRYIAHHAHCNSNQILCRKLARLNDE
FT                 SRPLSFLSFKINVPKSIEQILVSDGFWPLGVSIAPFLDRRSNSYKPTGTRP
FT                 HYRSKPSTHALKKQLAHTMPPPLQTTPLTSTKLRNLPPVYQLKNQNRFLPS
FT                 PNVAPQVSQLVPAKHQRTAAPQFRTSLV"
FT   CDS           770..3964
FT                 /product="CR1-78_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RLLAIRSVHCSFFRPSIEQLQTYRHSTSLPLETFDTC
FT                 FEETTSTHHATTVANNPSNEYETKKPAARLSIKEPESIPTESKCSSPSLST
FT                 SSSKTPKNCGSPVQDILGLDGIQCYYQNLGGMNSILSDYRLACSDSAYDVY
FT                 AFTETWLGESTLSQQIFGNEYTVFRADRTERTSCKSSGGGVLLAVRSNINC
FT                 NVLQPPNSPAVEQLWVEMKIAGHALFICVTYIPPDRINDPSITFSDTLLWI
FT                 TSRMALXDKILVLGDFNFRSVTWQLSTTGYFYPSPALSSLNSVQKQLLDDF
FT                 STAGLVQINPVFNSNHRLLDLCYVSQDITLDVSVSEAPAPLVKHVRHHPPL
FT                 HIFIKKYVPCKFVPAREKTRYKFWETDFEKMNCFLSTIDWSTIFHDLDTNT
FT                 AVEVFTFVVTYAIDQFTPKDASYAPLNPPWSNLALKKLKSRKRSALKRYSK
FT                 YRSNSAKRIYGTCNSKYKRLNKTLFHAYLNKIQRSLKKNPKKFWSYIDDQR
FT                 KESGLPSTMNLGERQVSTIPDICDIFRQQFSAVFVNENLSPQQVAEAASNV
FT                 PFYPTIGPHPEITVTTIETACKQLKSSSNPGPDGIPAVILKKCCTSLAFPL
FT                 AVIFNRSVNSGCFPTPWKKSFVFPIYKKGKKTDVINYRGIAALCATSKLFE
FT                 LIVLDFLKHNCLKLVSETQHGFIEKRSTSTNLVAYTSFIIKSMEARKQVDS
FT                 IYTDFSAAFDKINHQIMIAKLNRLGICGSLLAWLQSYLLDRTMSVKIGDTT
FT                 SSAFRVTSGVPQGSHIGPFLFLLYLNDVNSLLKCFKLSYADDFKLFYEVVC
FT                 HQDAVFLQNDLDIFTYWCTLNRMSLNPSKCSAISFGRKRSLICFDYSIAGE
FT                 TLNRVTSIKDLGVILDSNLNFKDHISYITAKASKSLGFIFRAAKRFTDVHC
FT                 LKTLYCSLVRSTLEYAVVVWAPYYNNSVQRIERIQHKFIRFALRHLPWNDP
FT                 FNLPRYEDRCSLIDLPLLENRRNISKACFIADVLQSRIDCPCVLNSLNIDI
FT                 HRRTLRSYQFLRLPTSRTNYGHNEPIANMSRLFNKCYHVFDFNLSRSAVKR
FT                 SFSEIFRT"
XX
SQ   Sequence 4219 BP; 1246 A; 1016 C; 713 G; 1242 T; 2 other;
     ctgctgccag aaatgcacct ctacccaccg ccaackccac ctcctccacc atcgctacca        60
     gaacatctcc agtcactggt actccatccg tcactgccaa tattatttcg catcaatcaa       120
     ccgcaagcct tccgcctaat gcttcaaatt acaaaattca tcgcactgcc gaccaagcga       180
     ttcaaactta cacaggtgcc attcccaaac ctcaacgact caaacccacc acatgctccg       240
     ttgcttgcca gacgtctaca gctgctgaga atatttcatc aatgaactac acaacaatcg       300
     actcgtccaa caatctcccg gtaacatcac agaacatcag ggatgccgga atacttgctc       360
     ctggacacac cgctcaatcc acttcaaatt tgctgccagg tactacgcca gtttccactg       420
     cacataaatc tcaaaatagt agggaagaat tgtgtgataa ggtaaatgat cattctacga       480
     aaagtagttc tattgcaaac cactcagaac gtccaccaac acttgcaata gccgttccct       540
     ctttagcttc gtcaagcata gataatgata attggtatta catcacccgc tttaagccac       600
     acgaaactga agaaaatgtc ataagatata ttgctcatca tgctcattgt aactccaacc       660
     aaatactttg tcgaaaactc gcccgattga acgacgaatc aagaccactt tcgtttttgt       720
     ctttcaaaat caatgtgcct aagagtatcg aacaaattct tgtctctgac ggcttttggc       780
     cattaggagt gtccattgct ccttttttag accgtcgatc gaacagttac aaacctacag       840
     gcactcgacc tcactaccgc tcgaaacctt cgacacatgc tttgaagaaa caactagcac       900
     acaccatgcc accaccgttg caaacaaccc ctctaacgag tacgaaacta agaaacctgc       960
     cgcccgttta tcaattaaag aaccagaatc gattcctacc gagtccaaat gtagctcccc      1020
     aagtctctca actagttcca gcaaaacacc aaagaactgc ggctccccag ttcaggacat      1080
     ccttggttta gatggcatac aatgttacta tcagaatctc ggtggtatga actctattct      1140
     ttctgactac agactcgctt gttctgattc agcctatgat gtgtatgcat tcactgaaac      1200
     ctggctcggt gaaagcacac tttctcaaca aatttttggc aacgaataca ctgttttccg      1260
     tgcagaccga accgaacgca caagctgcaa aagctctggt ggtggagttc ttctagccgt      1320
     tcgttccaat atcaattgca atgttcttca gccacctaat agcccagcgg tcgaacagct      1380
     ttgggtcgaa atgaaaattg ctggacatgc cttgttcatt tgtgttacct acattcctcc      1440
     tgatcgcatc aacgatccat cgataacgtt ttctgatacg ttgttatgga ttacatcacg      1500
     catggcacta amggataaaa tattggtatt gggtgacttc aactttcgat ctgttacatg      1560
     gcaactcagt actacgggtt acttttatcc cagccctgct ctttcttcac ttaattcggt      1620
     tcaaaaacag ctacttgatg atttcagcac tgcgggactt gtacaaatca atccagtttt      1680
     taactcaaac catcggttgc tcgacctttg ttacgtaagt caagatatca cgctagacgt      1740
     atccgtctct gaagcacctg ctccattagt caaacatgtt agacatcacc ctcctctgca      1800
     tattttcatt aagaaatacg ttccttgtaa gtttgttcct gccagagaga aaactcgtta      1860
     caaattctgg gaaaccgact ttgaaaaaat gaattgtttc ttgagtacaa tcgattggag      1920
     caccatattt cacgatttag ataccaatac agcagtagaa gtatttacct ttgttgttac      1980
     atacgccatc gaccaattca ctccaaagga tgcttcttat gcgccattaa acccaccttg      2040
     gtcaaacctt gccctcaaaa aactcaaatc tcgcaaaaga tcggctctca aaaggtactc      2100
     taaatatcgt agcaactctg ctaaacggat ttacggcact tgtaatagca agtataaacg      2160
     cttgaacaaa actctcttcc atgcttactt aaataagatt cagcgtagtc ttaagaaaaa      2220
     tccaaaaaag ttttggtcct acatcgatga ccaacggaaa gaaagtggtc ttccatcaac      2280
     catgaaccta ggtgagagac aagtgtctac tatacccgac atttgtgata ttttccgtca      2340
     acaattctct gctgtcttcg tgaacgagaa cctgagtcca cagcaagtcg ccgaagccgc      2400
     ctcaaatgtt cctttttatc caactatcgg tccccatcct gaaattacgg tcacaaccat      2460
     tgaaactgct tgtaaacaac tgaagtcttc ctcaaacccg ggtcctgatg gaataccggc      2520
     cgttatccta aagaaatgtt gcacttcgct tgcctttcca ttggccgtta tcttcaaccg      2580
     ctctgttaat tccggatgct tccctactcc ttggaagaaa tcatttgttt ttccgattta      2640
     taaaaaaggt aagaagactg atgtcatcaa ctaccgcgga atcgctgctt tgtgtgctac      2700
     gtcgaaactg tttgagttaa ttgttctaga ctttctcaaa cataattgct taaaactcgt      2760
     ctcggagacc caacacggtt ttattgaaaa acgttcgaca tcgactaacc ttgtagccta      2820
     cacgtccttt attataaaat caatggaagc acgcaaacag gttgattcca tatacaccga      2880
     cttctcggcc gcatttgata aaatcaacca ccagatcatg atagctaaac tgaatcgtct      2940
     gggaatatgc ggaagtctcc tagcctggct tcaatcttat ttactcgatc gaactatgtc      3000
     cgttaagata ggcgatacta cgtcttctgc attccgtgtc acttccggtg taccgcaggg      3060
     tagccacatc ggacccttct tattcctgct ctatctaaac gacgtcaatt cactactcaa      3120
     atgtttcaaa ttgtcctatg cagatgattt caagctgttt tatgaagtag tgtgtcatca      3180
     agatgccgtt ttcttacaaa acgatctgga tatcttcact tattggtgca ccttgaatcg      3240
     catgtctctg aacccttcta aatgctcggc catctctttt ggaagaaagc gctctctaat      3300
     ctgctttgat tactctattg ctggggagac tttaaataga gtaacttcga tcaaagatct      3360
     gggtgttatt cttgatagta acctcaactt taaggatcac ataagctata taacagctaa      3420
     agcatcaaag agtctagggt tcatctttcg tgcggccaaa cgttttacag atgttcactg      3480
     tctaaaaacg ttatactgct cgttagtgcg ttccaccctc gaatacgcag tcgtagtatg      3540
     ggctccttat tataacaaca gcgttcaaag aattgaaagg attcaacaca aattcattcg      3600
     ttttgcactc cgtcatttac cctggaatga cccattcaat cttcctagat atgaagatcg      3660
     gtgttcattg atcgatcttc ctttattgga aaacaggcgt aacatctcca aagcatgttt      3720
     tattgctgat gtgttacagt cccgtattga ttgtccttgt gtcttgaatt cattgaacat      3780
     tgatattcac cgtcgtactc tacgttcgta tcagtttctt cgtctaccaa cctcacgtac      3840
     taattatgga cacaatgaac ctattgccaa tatgtctcgt ttgttcaata aatgttacca      3900
     tgttttcgat tttaatttgt ctcgttcagc ggtaaagaga agttttagtg agatttttcg      3960
     aacatagtag gtttatttaa ggtagagtta gcttaattta agaatttatg ttagttttaa      4020
     ttcatcattt ggattgtatt attctgttga tgagaaaaga tgagaaggtt ttgcgcccat      4080
     ttgagagaga gctaaaatga tagctctact caaacgggct tttcccttct cctaaataaa      4140
     taaataaata aataaataaa taaataaata aataaataaa taaataaata aataaataaa      4200
     taaataaata aataaataa                                                   4219
//
ID   CR1-79_AAe  repbase;    DNA;    INV; 5089 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-79_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5089
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1167-1167 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..1708
FT                 /product="CR1-79_AAe_1p"
FT                 /translation="MTTVLCDVCIQKITIESDRVYCFGGCHKILHAKCFEL
FT                 NSAAVAALRQNVGLKYMCFDCRKDQTDLNAVKNHCSEIASTVDVMRESMDD
FT                 IDSKVNAILKTQFDDFQNSLLSHVKQLIGKEVANTYVCKTASTASSYADVT
FT                 RSGIDIPTAQNTRIELTTPSNATMYRQDSCTPVATDQDDDRGWLRSGKRRG
FT                 SKSSSTTNVKLNQIKSTVISNSPAPKTSAITKIEQTVTFKPIEVQSAEITK
FT                 RDIQQKLDPVSFAVKNVHFKDTGEASIRCESRELALRMMSAAKKVLSEKYA
FT                 IDIQNALKPRVKIIGFDESVSKDKLVDTIKKQNSSLQDVDMNVVRLKKNER
FT                 HKSNPMTALVEVDASLLVKLIKLQRVNVGWFRCRVVEDINVNQCYNCFEYG
FT                 HKACDCTAPACCPKCAECHEFNECESDFQKCVNCYNHNRQFKLNEENQLDI
FT                 AHSSWSTDCPIFLRRLNRAKQRIDYSS"
FT   CDS           1712..4999
FT                 /product="CR1-79_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QPIVTRGSTPTTLCSVSSGDTCVLPGNDTICICPAEA
FT                 GGDTARNLIQTALQTNYLDPITTEITSTLTSGDSYGPSGKHRTSICPAEAD
FT                 EDAARILIHRNLQSHQSNHCPTSSGNCANTDHCDCNASRNLESAESSSPPL
FT                 KIYYQNTRGLRTKMEDFFLAVSEMEYDVVVLTETWLNDQHLSTQLFGNSYT
FT                 VHRDDRDPVVTGMSRGGGVLIAVANHLSSSRVDVHTAIDLDQVWVKIDLRE
FT                 VRIFIGVVYFSPDQAAIPSKIEDHLNSVRAVSDIVSTSDINLLFGDYNQPN
FT                 IVWSNAPSGFAYPDPVESRFSVASSTLLDGMSLLDLKQLNVIKNTIGRTLD
FT                 LAFIGGDKYASCKILPVSDPLVTADSFHPPILSLLDCSPPVRFVEPDESGQ
FT                 FNFRKADFNALNSALQNTDWSVLETSDDVDDAVAMFNSTLTGMFREYVPVF
FT                 RRRLRPPWSNNHLKNLKRKRAAALRRYSINRNMYTKRIFVLASNKYKSLNR
FT                 KLYHRHVRQKQSNLKRNPRQFWSFVNDKRKQSGLPCSMFLGTQAANTQQES
FT                 CDLFAEHFADAFQLVPSDDELIRVALRNVPTNVISLNFTYFTEEDVLNAIK
FT                 KLKPSTSAGPDGIPPIVLKQCASSLCQPLLMICNKSVELGRFPESWKLSVM
FT                 FPAFKKGDKRNVQNYRGVTSLCAGSKLLETLVGRVLFAGVRNYITTNQHGF
FT                 FPGRSINTNLVEFTSFAIHEMEAGGQLDTIYTDLKSAFDRVNHDLLLAKIE
FT                 RLGATERFVSWLRSYLYNRVLYVKVGNATSVCYQATSGVPQGSNLGPLLFS
FT                 IFFNDICLVLPDGTRLLYADDLKIFLRIRSIQDCKELQRLIDVFQGWCSRN
FT                 LLLVSISKCSVISFTRRKTPIVWSYTMCGEPLERTSVVKDLGVLLDAKLSF
FT                 TDHYSSIISKANRNLGLIFRISSEFRDPYCLRALYVALVRSVLESASIVWC
FT                 PYTDNWGRRIEAVQRRFIRYALRFLPWNNPENLPPYEDRCRLLGLETLSNR
FT                 RSISKAAFVGKLLLNAIDSPTLLRQISFNVPPRLLRNRDFLRLDYHRTDYG
FT                 QNEPIRAMCSVFNSVVSVFDFNVSVDVFITRLKIMFNRL"
XX
SQ   Sequence 5089 BP; 1475 A; 1107 C; 1114 G; 1392 T; 1 other;
     cgctgatcac gataacaagt ccgcatgtga tacgattgtc cgcgtctacc ggtttttttt        60
     tcgttgttgt agcgtacggt attagtcaac atttatacgt tcgtgtagct cttaggaaga       120
     ccttttgaat gatacttcgg gctaaatcgt gcgattaggt ttagacgagt tacttccatc       180
     ggaagtttta tcgagttggg aaaaatcatc atcagccaca acaaaattgc ctcatcataa       240
     aggcccgcta cagggtaaaa attgcgtggc ggcggcagtg ccgctcctca atatgacgac       300
     ggtattgtgc gacgtgtgca tacagaagat tactattgaa agcgatcgtg tctattgctt       360
     cggcggttgc cacaagattc ttcatgcaaa atgttttgag ctgaattcag ctgccgtggc       420
     tgctctgcgg caaaatgtag ggctgaagta tatgtgcttt gactgtcgca aagatcaaac       480
     cgacttaaat gcggtgaaaa accattgctc tgagattgct tcaactgtag atgttatgag       540
     agagtcaatg gatgatatcg actcgaaagt taatgcaata ctcaaaaccc aatttgatga       600
     tttccaaaac tctttgctat cgcacgttaa acagctgatt ggaaaggagg ttgccaatac       660
     gtatgtctgt aagacagctt caaccgcaag ttcatacgct gacgtcaccc gtagtgggat       720
     tgatataccc acagcgcaaa atacgaggat tgaattaacc acaccttcca acgccacaat       780
     gtatcgacag gattcatgca cccccgtggc cactgatcag gatgatgacc gaggatggct       840
     ccgctctgga aaacgccgtg gatcaaagtc gtctagcacc acgaatgtta aactcaacca       900
     gattaagtcc accgtaataa gcaactcgcc agcccctaag acaagtgcga taaccaaaat       960
     agaacaaaca gtcacattca agccgatcga agtccaatct gccgaaatta cgaaacgtga      1020
     cattcaacaa aagttggatc cagtcagctt tgctgtaaaa aacgttcact tcaaagacac      1080
     gggtgaagcg tccattcgct gcgaatctag agaattggct ctcagaatga tgtctgctgc      1140
     taaaaaggtt ttgtccgaaa aatatgctat cgacatccag aatgcactca aaccgcgagt      1200
     gaaaattata ggatttgatg agagtgtgtc caaagataaa ctggttgata ccatcaagaa      1260
     gcaaaattca tcacttcaag atgtcgatat gaatgtagtt cgattgaaga aaaatgagag      1320
     gcataaatcc aatccgatga cggcattggt agaagtggac gcaagtttgc ttgtgaagtt      1380
     gattaagctt cagcgggtga atgttggatg gtttcgttgc cgcgttgtgg aagatataaa      1440
     cgtgaaccag tgctacaact gtttcgaata cggtcataaa gcgtgtgatt gtactgctcc      1500
     tgcttgctgt cctaaatgcg cggagtgcca tgagttcaac gaatgcgaat ctgactttca      1560
     gaagtgtgta aactgttaca accataacag gcaattcaag ctaaatgagg aaaaccagtt      1620
     ggacatcgct cactcatctt ggagcaccga ttgtccgatt tttctgcgtc gtctgaatcg      1680
     tgccaagcaa aggatcgatt actcatcata gcaaccaata gtgactcgag gaagcacccc      1740
     aacaacgctc tgcagtgtgt catctggcga cacctgtgtt cttccaggta atgacacaat      1800
     atgtatatgt cctgccgaag caggaggtga tactgcacgc aaccttattc agactgcatt      1860
     acagactaac tatttggacc ccatcacaac ggagattaca tcaacgttaa catctggcga      1920
     cagctatggc ccctcaggta aacatagaac aagtatatgt ccggccgaag ccgacgaaga      1980
     tgctgcacgc attttgattc atcgtaattt gcagtcacac caatcgaatc actgcccgac      2040
     gtcatctgga aactgcgcaa ataccgacca ctgcgactgc aatgcatcac gtaatctgga      2100
     gtctgctgag agttcgtcac cgccgcttaa aatctattac cagaacacac gtgggttgag      2160
     gaccaaaatg gaggatttct tcttggccgt atcggagatg gaatacgacg tagtggttct      2220
     aaccgaaaca tggctgaacg accaacatct gtccacccag ctattcggaa acagctatac      2280
     agtacataga gacgatcgag atcctgtagt caccggtatg tccagaggag gaggagtact      2340
     aatcgctgtg gcgaatcact tgtcctcaag tcgtgttgat gttcacaccg ccatcgactt      2400
     ggaccaagtt tgggtcaaaa ttgatttgag agaagtcagg atatttatcg gtgttgtgta      2460
     ctttagtcca gatcaggctg ctattccctc caagattgaa gaccatctca attctgttag      2520
     ggctgtttct gatattgtgt cgacctctga tatcaacctc ctattcggag attacaatca      2580
     gccaaatatt gtctggtcca atgctccatc gggattcgct tatcccgatc cagttgagtc      2640
     ccgcttttcc gttgccagtt caactctgtt agatggaatg tcgcttttag atctcaaaca      2700
     gctgaatgtt atcaaaaaca cgattggtcg cacgttagat ctggcgttca taggaggtga      2760
     taaatatgcg tcttgtaaaa ttttgccggt atctgacccg ttagttactg cggattcttt      2820
     tcatcctccg atactgtctt tactggattg ctcgccacca gtacgttttg ttgaaccgga      2880
     tgagtcagga cagtttaact ttcgtaaggc tgatttcaat gctcttaatt cagcacttca      2940
     aaatactgat tggtctgtac tggagaccag cgacgatgta gatgacgctg tagccatgtt      3000
     caatagtaca cttacgggca tgtttcggga atacgttccc gttttccgac gtcgtcttcg      3060
     acctccgtgg tccaacaatc atctcaaaaa tctgaaacga aagcgtgcgg ctgctttgcg      3120
     acgttactca atcaacagga atatgtacac gaagcgaata tttgtgttag ctagcaacaa      3180
     gtataaatca ctcaaccgta agctctacca tagacacgtt agacaaaagc aatctaatct      3240
     gaaacgaaat cctcgacaat tttggtcatt tgttaatgac aagcgcaaac aaagtgggct      3300
     tccgtgcagc atgttcctag gaacgcaagc ggcaaacact caacaggaaa gctgtgacct      3360
     cttcgctgaa catttcgcag acgcttttca attagttccg tctgatgatg aactgattcg      3420
     agtggctctt aggaacgtcc ccactaatgt aatttctttg aactttacct actttaccga      3480
     agaagatgtc ctcaatgcga ttaaaaaatt gaaaccatct acatctgctg gaccggatgg      3540
     tatcccaccg atcgtcctga aacaatgtgc aagttctcta tgtcagccct tactaatgat      3600
     atgcaacaaa tctgttgagc ttggtagatt tcccgagagt tggaaacttt ccgtaatgtt      3660
     tcccgctttc aagaaaggtg ataagcggaa cgtgcaaaac tatagagggg taacttcatt      3720
     atgcgctggt tcaaagttat tagaaacatt ggtgggccga gtactattcg ctggagtgag      3780
     aaattacatc acaaccaatc agcacggttt cttcccagga agatcgatca acacaaattt      3840
     ggttgaattt acatcgtttg caatacatga aatggaggca ggaggacaac ttgacaccat      3900
     ctataccgat ttaaaatctg cattcgatcg ggtgaatcac gaccttctac tagcaaaaat      3960
     tgagcgtctt ggtgcaacag aaagattcgt ctcatggttg cgctcatatc tatataaccg      4020
     tgttctctac gtgaaggttg gcaatgcaac atcggtatgc taccaggcaa catcgggagt      4080
     accacaaggg agcaacctgg ggccgctcct attctcgatt tttttcaacg acatctgctt      4140
     agtgctgcca gatggaaccc ggctacttta cgcggatgac ctcaaaatat ttttgcgaat      4200
     caggtctata caggactgta aagagctgca acggttaata gatgtattcc aaggctggtg      4260
     ctcgaggaat ttattgttag taagcatctc gaaatgttcc gtcatatctt tcacaagaag      4320
     aaagactcct attgtttgga gttacacaat gtgtggagaa ccattggaac gaacatctgt      4380
     ggtgaaagac ttgggagtgc tgctcgacgc aaagctctcg ttcacggatc actactcgtc      4440
     gatcatatca aaagcaaaca gaaacttagg attgattttt aggatttcat ccgaatttmg      4500
     agacccttac tgcttacgtg ctctttatgt agcgctggta cgatcagtcc tagagtcagc      4560
     atctattgtt tggtgtccct acactgacaa ctggggtaga cggattgaag ctgtacagag      4620
     acggtttatc agatacgctc ttagatttct accctggaat aatccagaaa acttgccacc      4680
     atatgaagac cgatgccgat tgttgggtct agaaaccctc tccaacagac gaagtatatc      4740
     gaaagctgcc ttcgtcggaa aactgctttt gaacgccatc gactccccca ctctattgag      4800
     gcaaatcagt ttcaatgttc ctcctcggtt acttaggaat cgtgactttt tacgacttga      4860
     ttatcaccga acagattatg gacaaaatga gcctataaga gcaatgtgta gcgtttttaa      4920
     tagtgttgtc agtgtgttcg atttcaatgt atctgtagat gtttttataa ctagactcaa      4980
     aataatgttt aatagattat aagtttttta atatgttcat gtagactaag cagtcagatg      5040
     aatagagatg taataataat aataataata ataataataa taataataa                  5089
//
ID   CR1-7_AG    repbase;    DNA;    INV; 3143 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   14-JUL-2016 (Rel. 21.07, Last updated, Version 3)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_AG.
XX
NM   CR1-7_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3143
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 633-633 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           463..2982
FT                 /product="CR1-7_AG_1p"
FT                 /translation="MYVPPDMANNTSVIHTICSTIDDVACKANEMCLLFGD
FT                 FNLSNLNWIPDETNPLMLQVDYESSRITDNCRLLLDCMNSNGLYQINKIHN
FT                 ASNNYLDLIFVCDDILQQCSPPAITPFPIVAIDCYHPPIELCLPNGLAKAE
FT                 HHTTSHQESGMLDYSRTNFLILNDLLQSSDWSFLDGNPDVNHALDMFNRKF
FT                 TEHLSACCPIKRPRQGPPWGNAQLRRLKRNKSSCYRFYQNSGTQQSRLRFI
FT                 AAHNVYRSYNRQLHSRFLIRIQFSLRRKPKKFWRYVDTKRKNSSLPAIVSF
FT                 NGTTSCTKEETCNLFADRFMSSFATEAPGFSLDAALNNVPSDAVDVNVRDI
FT                 NISRDSVLKALKQVKPSYNPGPDGIPTAVLAKCSEVLAGPLARIFTLSLNQ
FT                 RMFPAAWKSSYMFPVHKKGDKSLVENYRGITTLPAGAKVFEVVVQNSLLNC
FT                 CRSLISTRQHGFFPRRSVTTNLVEFVSHCHAAFASGAQMDVIYTDLKAAFD
FT                 RVNHRLLLAKLARLGFSTPLVEWFESYLTNRRYRVKVECMTSREFVSCSGV
FT                 PQGSNLGPLLFSLFFNDVTTVVRESECLLYADDLRLFFPVRCFGDCLVLQA
FT                 SIDSFSDWCLNNDLQISVDKCLSMSFHRSNCPIVFNYCISGTQLQRHSAVK
FT                 DLGVTLDRKLDFHVHHNEIIDRANRMLGFIRRQSREFSDPHCLVALYKSLV
FT                 RSILEYSSVVWCPSSSLWSNKIESVQKKFTRLVLRFTPWRNVAARPSYHAR
FT                 CLIFGLESLATRRETAQILFMKKIILGEIDSPDLLARVNFHVPARILRNFR
FT                 LLRVDQTRRAYSDNEPLTAMAIRFNAHYDSFDWNSLS*"
XX
SQ   Sequence 3143 BP; 864 A; 716 C; 628 G; 933 T; 2 other;
     tttgcacctg atgcaggtgc aggcwactta acgatcgtga acccaacact aactattgct        60
     acagtacaga tcctacactc acacaaacgc acgacggtca tgtcattcct gcaggggttg       120
     cctccttaaa taatactgac gatttgttat ttttatatca aaatgtaaga ggactaaaaa       180
     ctaaatgtca tgaggtattc gattatgttt ctactactca ttacgacgtc attatcctga       240
     ctgaaacatg gttggactat taactcgtca cagttgtttc cggaccatta tatcgtcttc       300
     agaaaggacc gtaatgacar aaatagcagg aaaaccaaag gtggtggggt tctcatagct       360
     gtcgcctcac atttgcgagt actcttatgt tctacatcag acactgtcga gcaactttgg       420
     ttaaagattt acagcattaa gaaaacgtat gttatcggcg caatgtatgt tcctcctgac       480
     atggcaaata acacgtcggt tattcacaca atctgttcaa ctattgacga cgtagcgtgt       540
     aaagctaatg aaatgtgttt gttattcggg gacttcaatt tgtcaaacct gaattggata       600
     cccgatgaaa caaatccact tatgctccaa gttgactacg aaagctcgag gatcacggac       660
     aactgtcgcc ttcttcttga ttgtatgaat agcaacggac tgtaccagat taacaaaatt       720
     cataatgcgt cgaataacta cctcgatttg atctttgtat gcgacgatat cctgcaacaa       780
     tgctctccac cggcaataac acccttcccc atagttgcta ttgattgcta tcatccgcct       840
     atagagctat gcctgccgaa cggcttagcc aaagcagaac atcacacaac atcacatcaa       900
     gaatcaggca tgctcgacta cagtcgcaca aactttttga ttctaaatga tctactgcaa       960
     tcctctgact ggtcattcct tgatggaaac ccggacgtaa accatgcact cgatatgttc      1020
     aatcggaaat ttacggaaca tttatctgcc tgttgcccta taaaacgtcc acgacagggt      1080
     ccaccgtggg gtaatgctca attacgccgt ttaaaacgaa acaaatcttc ctgctatcgg      1140
     ttttaccaaa acagtggaac acaacaatcg agattgcggt tcatcgctgc acacaatgta      1200
     tatagaagct ataatagaca acttcactct cgttttttga ttcgtataca gttcagctta      1260
     agaagaaaac cgaaaaaatt ttggaggtat gtcgacacaa aacggaaaaa cagctccctg      1320
     ccagctatag tttcctttaa tggaacaact tcgtgtacca aagaggaaac ctgcaattta      1380
     tttgccgatc gtttcatgag ttcgtttgcc actgaagctc ctggcttctc attggatgct      1440
     gctctcaaca acgtgccctc cgacgctgtc gatgttaatg tgcgtgacat aaacatctcc      1500
     agagattctg tgctaaaggc gctcaagcag gtcaaaccat cctacaaccc tggacctgat      1560
     ggtattccaa ccgcagttct tgccaaatgc agcgaagttt tggccggacc tctggctcgt      1620
     atcttcacac tctctctcaa tcagcgtatg tttccagcag catggaaatc gtcctacatg      1680
     tttcctgtgc ataaaaaggg ggataagagc ttagtggaaa actaccgtgg cattactact      1740
     ttgcctgcag gtgctaaggt ttttgaagtc gtcgtccaga actcgctctt gaactgttgc      1800
     cgctcgctga tatcaacacg ccaacacggg ttcttccctc gccgcagtgt gaccaccaat      1860
     ttggtggagt ttgtatctca ctgccatgct gcattcgctt cgggagccca gatggatgtc      1920
     atctataccg accttaaggc tgcctttgat cgggtgaatc atcgcttgct gttggcgaag      1980
     cttgctcgtc ttggattctc taccccttta gtggagtggt tcgaatctta cctcaccaat      2040
     cgtcgatatc gcgtcaaagt tgaatgtatg acatctaggg aattcgtgag ttgttcaggc      2100
     gtgccacagg gtagtaacct tggacccttg ctgttttctc tatttttcaa tgacgttact      2160
     actgtagtaa gggaatctga atgtttattg tatgcggacg atcttagact tttttttcct      2220
     gtgaggtgtt ttggtgattg tcttgtcctg caagcatcga tcgactcttt ttccgactgg      2280
     tgtctgaaca acgacctaca aatttctgtt gataaatgtt tgtccatgtc gtttcaccgt      2340
     tctaattgtc caatagtgtt taactactgc atctccggta cacaattaca acgacacagt      2400
     gcagtaaaag acttaggagt tacccttgac cgtaaacttg actttcatgt gcaccataac      2460
     gaaattattg atagagcgaa cagaatgcta ggatttatac gcaggcagtc gagagaattc      2520
     tccgacccac attgtcttgt cgcactctac aaatcactag tcagatccat cttagaatac      2580
     tcctcagtag tttggtgccc atcgtcgtcg ttatggtcga ataagattga gtcagtgcag      2640
     aaaaaattca cccgtttggt cttacggttc acaccctggc gtaacgtagc agcgagacct      2700
     agttatcatg cccggtgttt aatttttgga ctcgagtctc tcgctactcg tcgcgaaacg      2760
     gcgcaaatct tgtttatgaa aaaaatcatc ctaggagaga tagattcacc ggacctttta      2820
     gctagagtta atttccacgt acctgctcgt attttaagaa actttaggct actaagagtt      2880
     gaccaaacta gacgtgcata tagcgataat gaacctttga ctgcgatggc tatcagattt      2940
     aatgcacatt atgactcttt tgactggaat tccctaagtt aacctgtttt tcttgctgtg      3000
     atactctgtg ttatttattt tgtgctgatg ttacattgta ccgtgatgct ttatgttatt      3060
     ataagtttag tttataagat cagtgataag gccaatgatg gccaatcact taacatttac      3120
     aaataaacaa ataaacaaat aaa                                              3143
//
ID   CR1-7_CQ    repbase;    DNA;    INV; 3288 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3288
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 9-9 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..3185
FT                 /product="CR1-7_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LAVGVRSGQTSGASYRAVPDDRRAAAVGSRADPDADG
FT                 ACTTDRFTCQPTNXGRCRNGDYRVETAATSNSPQIAASTQPTHSVLLPRRQ
FT                 RRPNRKLVPSSLLVYYQNAGGIRTKTNQFNLALASSDYHVIAVSETWLRDG
FT                 ILDSELSSNYQFFRKDRSPATSELRRGGGCLVAVKNGLDATLVKLAGYDHL
FT                 EQTIIRVKVRRQNVFLCCIYIRPNSPNDIYLSHYAAVREVLSKAGVNDLVI
FT                 VVGDYNLPGLRWTFDDDVNAFIPNNASTEIELDLMESLLTSGMQQVCNLSN
FT                 ARGNILDLAFVNDADRVDLIEPPSAILKPDRHHKQFVLKVDLHHNPDQVSQ
FT                 HSADVADFDFNRCDHVAVTDALNQIDWDNVLNSEDANTQASQFYSVVFDVI
FT                 QQLVPRKRIARDRSIKQPWWNAELRHKRNILRKARKRLFRSKSPEDNVCVE
FT                 RLETEYELLNETLYREYLDNIQTRLTDDPSSFWSYVKSRKRTDGIPSVVDS
FT                 GDRSSNSPEEAANLFADFFKGVFNHGLHTAPADYLDEIPSHNIDMPFPVLS
FT                 EAEVLEALAAVDSSKGPGPDKLPPSFIKMCAGSLAHPVSLVFNRSLTNGQF
FT                 PDVWKVAAITPIHKSGRRKDVQNYRPISILSCLPKVLEQLIHKRMYAAAVP
FT                 IISEFQHGFVKKRSTVSNLMLYVSSINSSLEKRCQVDSVYVDFAKAFDKVP
FT                 HNLAIEKLRRMGFPRWLTVWLSSYLTGRTGFVRIGSSRSLQFAVTSGVPQG
FT                 SHLGPLIFLLFVNDICTHLKSQKLLYADDLKVFRVVSSAIDCVALQQDICA
FT                 INEWCVRNGMKVNEEKCNVISFSKKQDTIHYRYEMNSHLLTRVDCIKDLGV
FT                 MMDHKLTFDKHVAVTSAKAFATLGFLRRNTVDFENIRALKTLYISLVRSIL
FT                 EYAVQVWAPHYAVLCDRLEKVQKSFTLYALRRLPWRNPAYLTSYDDRRRLL
FT                 QLESLEHRRIFLQRLFVFDVLTNRVDCPEIRQKMSLHEPQRALRTYLPFRI
FT                 ARHTTVYGQNHPIDRCCRYFNPVWCFFNFDMTKELFKTKIRNVL"
XX
SQ   Sequence 3288 BP; 869 A; 831 C; 751 G; 836 T; 1 other;
     tcgctgattt tgtgccgtga gttcgaggac tataactcgc agtcggggtt cgatccggac        60
     agacctcagg cgccagctac agagcagtcc cagatgatcg aagagcagca gccgttggat       120
     cccgtgcaga cccagacgct gacggtgcct gtacaacaga ccgtttcacc tgccaaccaa       180
     ccaacwccgg ccgatgtcgc aatggagact accgagtaga aactgctgcc acatccaact       240
     ctccacaaat tgctgcttca actcaaccaa ctcattcagt gttattacct cgacgccaac       300
     gccgaccgaa tcgaaagctt gtcccttcca gtctcctcgt ttattaccag aacgcaggtg       360
     gtattcgaac caaaactaac cagtttaact tggccctagc cagcagcgat taccatgtga       420
     tagcggtgtc tgaaacgtgg cttcgtgatg gtattctgga ttcagagctc tcatccaact       480
     atcaattttt tcgaaaagat cgtagtcctg ctacgagtga actgaggcga ggaggtggtt       540
     gccttgttgc cgtgaagaat ggactcgacg caactcttgt gaaactcgcc ggctatgatc       600
     atctggagca gaccataatt cgtgtcaaag ttcggcggca aaatgtattt ttgtgctgca       660
     tctacataag accgaacagc ccgaacgata tctacctttc gcactacgca gctgtccgtg       720
     aagtgttatc gaaagctggc gtaaacgact tagtgattgt agttggagac tacaacttgc       780
     ctggtctgcg ctggacgttt gacgacgacg tgaacgcatt cattcccaac aatgcctcga       840
     ccgaaattga acttgacctt atggaatcct tactgacgtc cggaatgcag caggtttgta       900
     atctctccaa tgctagaggc aacatacttg acctagcttt cgtgaacgac gcagatagag       960
     ttgacctgat cgaacctccg tcggctattc tcaaacccga ccgacatcac aaacagtttg      1020
     tactgaaggt tgacctccac cacaatcccg accaagttag ccaacactct gctgacgttg      1080
     ctgattttga cttcaaccga tgtgaccatg ttgctgttac ggatgcattg aatcaaatcg      1140
     actgggacaa cgtgctgaac tcggaagacg ccaacactca agcatcacag ttctacagcg      1200
     tagtatttga cgtgattcaa cagctcgtgc cgaggaaacg gatagctaga gatcgatcaa      1260
     tcaaacaacc atggtggaat gctgagttac ggcataagcg gaacattctg cgcaaagcaa      1320
     ggaaacgact gtttcggtcg aaatcaccgg aggataacgt ttgtgtcgag cgactggaaa      1380
     cggagtacga gctgctgaac gaaacactgt accgtgagta cctcgacaac attcaaaccc      1440
     gcttaacgga tgacccttcg tcgttttgga gttacgttaa gagcaggaag cgaactgatg      1500
     gcattccttc cgtggtcgat tcgggtgatc gtagctcaaa cagtcctgaa gaagcagcta      1560
     atttatttgc cgactttttc aaaggcgtgt tcaaccatgg cttgcacacc gctccagcag      1620
     attatctcga cgaaattccc tcccacaaca ttgacatgcc atttccggtt ctttctgaag      1680
     cagaagttct agaagctttg gctgcagttg actcttcaaa aggccctggt cctgataagc      1740
     tgccaccttc tttcattaaa atgtgcgctg gatcgttggc acaccctgta agcttagtct      1800
     tcaaccgatc gcttacaaat ggtcagttcc cagatgtgtg gaaagttgct gccattacgc      1860
     caattcataa atctggacga aggaaagatg ttcaaaacta cagaccgatc tcaatactat      1920
     cctgcctgcc aaaagttcta gaacaactga ttcacaaaag aatgtacgct gccgcagtcc      1980
     ccatcatatc ggagtttcag catgggttcg tgaagaaacg atccacagtc tcgaacttga      2040
     tgctgtacgt tagctcgata aattccagcc ttgagaaacg gtgccaggtt gattccgtgt      2100
     acgtggactt tgccaaagcc tttgataagg tgcctcataa cttggcaatt gaaaagctga      2160
     gacgtatggg attccctcgc tggctcacgg tatggctctc ttcctatctg accggcagaa      2220
     cagggtttgt tcgcatagga agctcacgat cgctccagtt tgccgtgacc tccggagtgc      2280
     cgcagggaag ccacctcggc ccattgatct ttttactgtt cgtcaacgac atttgcactc      2340
     acctcaaatc ccaaaagttg ctgtatgcag atgacctcaa agtgtttcgt gttgtttcct      2400
     ctgccatcga ttgcgtcgcc ctgcagcagg atatctgcgc tattaacgaa tggtgtgtta      2460
     ggaacgggat gaaggtgaat gaagagaaat gcaacgtcat cagcttctct aagaaacagg      2520
     acacgattca ctaccgatat gagatgaatt cacacttgtt aactcgtgtc gactgcatca      2580
     aagacctcgg cgtaatgatg gaccacaagc tcaccttcga caagcatgtc gctgtcactt      2640
     ccgctaaggc ctttgcaacg ctgggattcc ttcgacgtaa cacggtggac ttcgagaaca      2700
     ttcgggcact taaaacgctg tacatctctc tggtacgaag tattctcgag tatgctgtgc      2760
     aagtctgggc accgcattac gcagttctgt gtgaccgctt ggagaaagtg cagaaaagct      2820
     ttacactata cgctctacgt cgcctgccct ggaggaaccc tgcgtaccta acaagttacg      2880
     atgaccgccg aagattacta caattagaat ctctagaaca tcgccggatt ttcctgcaac      2940
     gtctgtttgt gtttgacgtt cttacaaacc gagtagactg cccggagatc cgtcagaaaa      3000
     tgagccttca cgagccccaa cgtgcgctga gaacctacct gccgtttagg atcgctaggc      3060
     acactaccgt ttacggacaa aaccacccga tcgatcgctg ctgccgttat ttcaacccag      3120
     tttggtgctt ttttaatttc gacatgacaa aagaactatt taaaactaaa attagaaacg      3180
     tgttgtgacg tacctttatg tttttaatgt tttatatctg tttatacgtt tagtttataa      3240
     gtatatacag tctgtgcggc ataatgccga agacggtgac aaataaaa                   3288
//
ID   CR1-7_DEl   repbase;    DNA;    INV; 4674 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4674
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4597-4597 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 4674 BP; 1229 A; 996 C; 868 G; 1573 T; 8 other;
     cagtcttcag tcagctctca ttgcgatcgg acgtgctttc ttcttcgcta tgtcaatctg        60
     ttccgaatgc aattccgaag taaccgccgc gcagcttcgc cgtttcgatg cgattcggtg       120
     ttcttctctt tgccgccgcg cttttcacat tgcttgtgtc gaattgcagc cggatgcaat       180
     ttaattgcta acgaacctgc caaacctact ctggcagtgt gatggctgtg ttgtccataa       240
     tgactctcac tctaaagttg acgaaatcaa caatagagtt attgaactgg aaatgcaata       300
     tatggattta aataccagat ttcttaatgc cctgccgaat ttgtctaatc atgtcgatac       360
     tatgccgcgg aacaagacgg ccattaccac tgcagctcca attgcagcgt ttcccattcc       420
     accttcaact agttccgaaa tttctaattt agagtttcct gctgtgagct ctgttccggt       480
     gcgtaggatg aaaaagaaga ttcataaaac caataagaag cgcctagttg gactggcccc       540
     tagctgtgat gcatttcaag ctctgccaag cagaaattat cttcacattg gaaaatttcc       600
     tgttaccacg aagccagagg cgttgtgcaa atatgtgtcc gataagccgc atatcgaagt       660
     taatactawa tcttgcaaca gcctggtaaa aaaagatgtg gacatttcgt cgcttaaktt       720
     cataaacttt aakctgggag ttcctgggca gcatttttcc actgttttta gtggcgwatt       780
     ttggcctsaa tcggtcaagk takgccgttt tattcatagg gacaaccagt tgaagttact       840
     gttgtggata accgacttat tggaggacct cagcgtacat caacatcaac acctacggca       900
     gcttcaaaaa acccccagta attggcgcta ctggcgctga ttttgttccg ggacaatttt       960
     tacagtcaac tcttcatccg cctactcttc ccttgcaaca acaacagctg tctctatgac      1020
     ttcggcttgc agtgcatttc tcagagaggc gttttcctct cgttccgatg ttctccagct      1080
     ggaccaacaa gaacagctgc aattatctgg ttcggctttg acaataatgc tgaacgcgct      1140
     cttcgttgcg ctttgctccg ctccgatgca acaacagttt cgtcgggagt tctatcgctg      1200
     tccaatttac atgagcatcg ctcaagcgct ggatatgatg ctgttctaag tgcgctcttt      1260
     ggagttggcc tctcttcagt cttcgccgct cttccgacct ggaacttttc ttcgcatgct      1320
     ggattgatga catcgaactc ttaaggcgca ttctcgtatc attctcattg ttgccgggcg      1380
     ttgacgatgc tcttcggata tctgacgttt gggagctctt gggtcatctc ttcaattact      1440
     cgaactgttc tcagatcact atctgcataa gcaagtatct acaaggctgc tttcttaact      1500
     ctattgatta tagctcatac gtgcctgagt tattatacac cttatcattg gaacagcata      1560
     accctatgca tttttcaaat caggaagaga taaaaaaatt aaatttcatc gtattaaagg      1620
     caatttgtgg agtctacaag cctcagtcag aaactggaca ggacgcttct ggttcagcga      1680
     ttgtgtttgc aacttattct tgcaatcttc cttctgcggt gccacatacg cgagcaccta      1740
     tagtggccgg aaggattctc ttaagacata cttccaaaat atatcaggca tgcgcaccaa      1800
     ggctgagttg gtttatttga tgacttctac ctgcgacttt gatgtgataa tattagttga      1860
     gacctggctc aactccaact tttttaatga cgagttcttt gattcgaacc agttcctgat      1920
     ttatcgtaaa gatagggatg ctgagaaaac gcaccattca agaggtggag gagttattgt      1980
     ggcagtccga cgcactcttc tttccgaaaa tattattctc tcaaatgagg attcattgct      2040
     ggaccagatt tgcgtttcag ttcatgggcc atctgaaaaa gttgtattta ttgcatcata      2100
     cataccacct aacagcgact acagcctcta tgaggcacat ttggataaca tttcatgcgt      2160
     tcatcaaggg ctactggata ccgatcatat ctgcgtattg ggtgacttta acctaggttc      2220
     ccttgtgtgg gtgcaggatc cccactcttc taatttaatt cccagcaacg ttcacttacc      2280
     acatgagatc ctattaattg atgacttgtt cagtatgggc ttaacccaga taaacacaat      2340
     ctttaactgt ttaaatagat tattagatct agtttttgtt aattcagaaa tcaattattc      2400
     tataagccta tgcgaatgtc ctatttcgaa atgcgatgtt catcatatgc cattgctttt      2460
     aaatttacaa ttttatactt ttgagcatga attacctcaa gttccatttt acacatttaa      2520
     tgaaaataat ctactcgctg ttcgtaatga tataataact gttaattggt cttcagtttt      2580
     ttcgcatgct agtgttgatg attgctattt aaaatttctt aatattattt ctgatattct      2640
     caaaaggaat tgtcctctga aggtacggag tccttatagg ctgccatggt acacaagtgg      2700
     tctaaaaaaa tataaaaacc ttcgtaataa gttttacaaa cgatatctgg caactcgtaa      2760
     ctctcttgac tgggaacgat acaggcagca caagcgggag tttgaatttt taaataaatt      2820
     tctgtacaac cagtacatta tcaatgttga gaatggtctt aaacaaaatc ctaaaacttt      2880
     ctggaggttt gttaattcaa aaaagaattt gtcttctata ccttcttcta tgactatgga      2940
     taacattact gtttcctctg agctgggtgt ggccgcaaaa tttaattcta cttcgaacct      3000
     cttagtgatt ggaaccatct agagacattg aataatattc cgtttcttcg taatattgga      3060
     attttttcag tgtccttcga tgatattcat caagcggtgg acgtttttga tgataataat      3120
     aagcctgacc tggatgggat ttctccctgt ttcttaaaaa attgtgtctc agcactttgt      3180
     cagcctctaa aattaatctt cgacttgtca ctttccaggg ggtgttttat taaaaaatgg      3240
     aaagaagcca cggttacacc aattcataaa tcgggtagta aatgccttat cattaactat      3300
     cgacccattg ccaaattgag taacatatct aaactttttg agcggattat caccaagcat      3360
     ctttcctttc ttgtgaagcc ctacatttcg cccaatcagc atgggtttat gtccggtagg      3420
     tctactacct caaatttagc tgtttttagt aattattgtc tcaatgaatt tcaacgtcag      3480
     tgtcaggtag atggtatcta cttggatttt gcaaaagcat ttgataaagt ttgccataaa      3540
     gcacttttcg ccaagcttcg gcaattggga tttcatccct cgttgccaaa attgattata      3600
     tcatatttgg atcggaggac ctatcgggtc aacattaatg gtaatctttc ttgcccattt      3660
     gttgcaactt caggccttcc tcaaggtagt gcccttggcc ctcttctttt tataatattt      3720
     attaatgacg tttcctgctg ttttatgaac tcagaatatc ttttatatgc tgatgatatt      3780
     aagatcttta gatctatccg ttcagttgct gacactagcc tgcttcaagc tgacctgaac      3840
     ctcgttagtg cgtggtgtgt caataatttg ctcccactta acttaaataa atgctatttc      3900
     gtcaggtata gtaaacgcac ttttgatatt ttaagtccct attcattgta ctcacagctt      3960
     ttgccacacc aatgtgagtc tttagacctc ggggtcttgt ttgattgtaa atttagtttt      4020
     tctgggcacc ttaactatat tatacccaaa gtctatgcta tgtttgggtt tgttaggcga      4080
     aatagtatgc attttgaccc ttatactaaa cttacactct attcagcact tgtgcgctcc      4140
     aaattagatt atgcctcttt catttggaac cctacggctt cttcgcacgt taatagaatt      4200
     gagcgcattc aaaaaaaatt tctcagattt gctctttctt cacttaattt tgctgaccct      4260
     ttgccatctt actctagcag atgtcgtctt gtccatctct ctagccttga agaccgtagg      4320
     aaaatacaag ccttacttat cctggatgac cttcttgctg gcagccttga ttgccctgtg      4380
     ttgctttcca aaatagactt ttgtgtgcca tgcaggtctt tacgttctca cgaaccattt      4440
     tttattaagc attgtaggac taattacgcc ctttatgagc ctatttgtcg ggctcttcga      4500
     ctatataatg ctttaccacc tagcatgcgg ttcgacttca gttccaacaa gcaattagtg      4560
     cgttattctt tagttgaata ttttttaact tgttttgttt agttttaaga tatatataga      4620
     tgtagccagt aaacatattk ttttggcgaa taaataaata aataaataaa taaa            4674
//
ID   CR1-7_DT    repbase;    DNA;    INV; 4807 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4807
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1698-1698 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~88% identical to CR1-4_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4807 BP; 1357 A; 1078 C; 905 G; 1464 T; 3 other;
     tgtcgccgta cttttcacac tgcacgtgtt gatctccctg aggatgctat wagattatta        60
     acaaatatgc cgaatctact ctggcagtgt gatkgctgcg ttgtgagtaa tgatgcacac       120
     tccaaaatcg atgaagtgat ggaagaactt catgacttga agagtctata catggactta       180
     aactcaaagt ttctgaaggc ttttcccatg tctgatactg acaataacaa tgtcagtcgg       240
     cgaaaaaaag tggtgaaacc tttggctcca gcttcttcaa gtgatcgcca agccaaccat       300
     gcagacctgg ttccccccgc accagtttct actgccgcca agccccacgc aaagaatcac       360
     aggaataaga gacaaataat tggtcaagct gctagttgtg aacaactcga cgttgtgccg       420
     attaataaat ttcttcatat tggtagattc agagctcatg taaaatctga ttctgtgagt       480
     ggatatgttg caaataagct aggcgtggat accgctacca taatctgcaa gcctttagtc       540
     aaaaatggag tagatgtcgc tacattggaa ttcgtcaatt ttaaattagg aataccagag       600
     cagcactttc agactgtgtt tagtaatgca ttctggccga atccaatcaa agtcagtcga       660
     ttcgtccata gggataggcc tattgttgat gggaacgtcc tggattcgca caatcatcat       720
     acatcggact caaaaaaccc ccaataatcg gcgcctctgg tgtcgatttt actacggcaa       780
     attgtcatga tccgcttcct catcttcatg ctacttattc gcaaggtcaa cgcccgctgg       840
     tttcggtatc gctagttgct accattaatc cctcatacgt cactcccagt gcactctctt       900
     ggagcgcatt gccaaatcaa caacatcatc agctggattc ttcgttttct gttttgtctg       960
     acgttcatca aaagttctca ggagaggmtt ttgcaccaga ttccatcaag attcgcggtc      1020
     taagagcgct ctgcggagtt gtgcactcat caccgccaaa acaacaacaa catcagctgg      1080
     agttgtcgtc ctctgctttg cgcgacattc gtcagcgctc cctgagggcc ccatcacttc      1140
     catcatccgc tctaagcgcg ctctgcggag ttgtgcactc atcacgccaa agcaacaaca      1200
     acatcagctg gagttgtcgt cctctgtttt gcgcgacatt cgtcaaacgc tctctggaga      1260
     ggaactctca tcatctttca ccaagcttct cgctctaagc gcgctctccg gagttgtgca      1320
     ctcatcaccg ccaaagcaac aacaacatca gctggagttg tcgtcctctg ctttgcgcga      1380
     cattcgtcaa acgctctctg gagaggagca cccatcattt tccatccaca tctcgctcta      1440
     agcgcgctct ctagagttgt gcgctcatca cagtcaagca atcaacaaca tcagctggag      1500
     ttgttgttgt ctgttttccg cgaagttcgt caatcgctcc ccagcgaggc gctcttatcg      1560
     catttcatca atattcccgc tctaagcgcg ctcttcggag ctttgcgctg tttacaatcg      1620
     aatcaacaac aaggtcagct ggagttctca tcggcagctt ggtgtggctt ttctcgatgg      1680
     ctccatcaac aacaacattg cccttctctt ctcaacttgg atagatatgc tcccttaaca      1740
     gcgccattgc catcactctt aagaactagt tactcttcgc taaaagcatc taacaatcta      1800
     caggaatgca tgcatgataa aatacgtatc aaaaccacta cattactgaa ggtgatctgc      1860
     gggcctacaa cattgggatc gcaagatcat atacttccta tagcattgga ctataatgca      1920
     ttaaatacga atccagaggt tgttgatcat gctactgtga gtacagcccc gttaaaagtt      1980
     tattttcaaa accgggcggc aaggcggagc agtatacctt gccacatcac aatgcgagtt      2040
     tgatgttata gttttagttg aaacttggct taacataaac ttttactcaa atgaattctt      2100
     cgactccaaa ttgtaccatg tgttccgcaa agacagagat agcacgaaaa cccactgtgc      2160
     tagagggggt ggtgtaattg tagctgttcg ctgcaatttg cgctgcttgg caattggact      2220
     tctcattgaa gatacccttc tggatcaagt tgctgtttcg ataattggag aatatgaaac      2280
     tctgcaaatt gtggcgtcat atataccacc aaatgcatct tataaacttt acaaggctca      2340
     tctggaaaac attaccgaca tctacaataa tctgctggac catcaacata tctgtgtgat      2400
     tggcgacttt aatttgtctt ctctcgtttg gtcccaggat ccggaccatc aatcttcact      2460
     gccaagcaac atacatcaac cacacgagat tcttttcatc gatgatattt tcagtatggg      2520
     cttaatacaa gtcaataata tatacaataa cttacataaa attttagacc tagtatttct      2580
     tagcgctgat attaactttt ccttagtcca atgtaattca cctataagca attgtgacat      2640
     ccatcatagg ccattgctac taggtataaa cttttatagt tttgcgcctt cagctgaaca      2700
     ttctcctaga tttattttca atgaaaccag cctctgttcc atcagaaatg agatatctgc      2760
     cattaactgg gaatcagttt tatcacatat tagtttggag tcgtgttatg acactttttt      2820
     agtaattatt ttaaacatta ttaagaacaa tgctcgagaa agggaccaaa gttcattcaa      2880
     attgccttgg tatacaaaag gtttaaaaac gcttaaaaat cgatccttat gattggaata      2940
     gacacttgca gcacaaacgt gagtttgaat ttctaaataa atttctgtac aatcaatata      3000
     tagcggatgt tgagatcgga ctaaaaagta atcccaactc tttttggcga tttataaatt      3060
     caaagaaaaa aacttcttca gtaccatctg ccatgttcct agggaattta tcttcgcatt      3120
     caaatataga aactgcaaat ctttttgctt cttatttcaa agataatttt gagccaacag      3180
     gagcctggaa tgattctcaa accttaaatg cgattactcc tctattgaat ttaggtagtt      3240
     taatcgtgct ggaagagaat attcataagg ccgttgaaga cgttgatgaa tcttacactc      3300
     cggactgtga tggtattccg gcttttattc tgaaacattg tataaatgtg ctatgcgtac      3360
     cactaaaaat tatttttgac aaatcacttt ctagtggaca ctttgcggaa agatggaagg      3420
     tcgcatccgt gactccaatc ttaaaatcag ggccgaagaa taacattgcc aattacaggc      3480
     ctatagcaaa gatcagtaat atcgctaaac tcttcgagcg cattgttgcc cataaattat      3540
     catttcttgc taaaacatat gtaagcactt ctcagcataa ttttgtagca ggtcggtcaa      3600
     ccacgactaa ccttgccgtg ttcagcaact attgcgttca ggcatgacaa agttagccac      3660
     agtgctctac tggcaaattg gaatgtatac ccaagctcgc ttgggtatac attcggcatt      3720
     actaaattgg ataaaatcat atttacacaa tcgtctttac agagtgaata ttaatggaaa      3780
     tttctctgat tcctatttgg caacctcagg cctccctcag gggagtgcta tgggacctct      3840
     gcttttcatt attttcatta atgatgtgag gttctgtcta tcttcagagt gtctactgta      3900
     cgcagatgat ttaaaaattt ttaagtctat taaaatagcg acagactcac aatcggttca      3960
     acaggactta gattcgttga gctcttggtg tagccgaaat gcgcttcctc taaacataaa      4020
     caagtgcttc tatgttactt acagtaaatc tgtatataat ttcttcacat cttataatat      4080
     taatggtcaa cctttacagc tgcggcagga atccttggat ctaggtgtga tgtttgactc      4140
     gaaatttaag ttctcagcac acttcgatta catcttgccc agagcctatg ccatgtttgg      4200
     atttgtgaaa aggaacgctt cgctattcac tgatccctac accagacttg cgctttactt      4260
     tgcatttgtc cgatctaagc tagaatatgc cgctcttata tggaatccct ttactagcac      4320
     tcatggaaat agaatagagc ggctacagaa acaatttctg aaatttgctc tattgccgct      4380
     aagattgtta gaccctgttc cttcttatca ccagcaatgc aagcttgttc gtctaccatc      4440
     ccttgcgcat cgtagaaata tcctggccat ttgctttatc tttgatttgg tgaatggtgg      4500
     tatcgactgt cctgagctac tctcgaaagt tggttttaac gctccttcta ggcaactgcg      4560
     gaattttgat cccttttttc ttgagctgag gcggactaat tattcccaaa atgagcctct      4620
     ctatagggct ttatctgagt ttaacgcact tccagctgat atgcaatcag actatttccc      4680
     aaataaaacc attttgaaac ataggttaat taattatttt gtaaatgtta gcacgtaata      4740
     taatttgttg gattgtataa gtagccagtt aaggtatatc cgttggcgaa ataaataaat      4800
     aaataaa                                                                4807
//
ID   CR1-7_Hmel  repbase;    DNA;    INV; 1850 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1850
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           556..1353
FT                 /product="CR1-7_Hmel_1p"
FT                 /translation="LQCGNEMAGQQFALVKYCQDQVPNILYTRKKYHDQHQ
FT                 QESLQLKAHYCRLDDSNLICNCQKLTQTQSLKYLGVVVDQHLSWKDHINSL
FT                 YGRVKRLISIFKNIRYICDLQLLRSIYFALCNSLISYGIIVWGGANKTLLL
FT                 RVERAQRAILKVIFCKDYRYPTDALYKDLAMLNVRQTYLLAILKDQHKHSI
FT                 VGTHNQRRRQDLVFELPTVKSAFARKFYLSLAPHIYNKISKSVKLKNLNNY
FT                 TFKKTVDKYLKALTYNDTEKFIKLI"
XX
SQ   Sequence 1850 BP; 698 A; 328 C; 240 G; 566 T; 18 other;
     tctgtaacta caggcccatt tctttactac caacactttc caagatcatt gaaaaattgt        60
     aaacaatcgt ctaaaagtat tcctaacgaa aaataaaata ttagccctaa accaatttgg       120
     ctttcaaaat aataaatcta catctgatgc tctaaaatct ctaacctcaa atataataag       180
     ccttttagat aaccgcgtga agtgtatagg aatattctta gatttaaaga aggcattcga       240
     cactgtctct gtgcctctat tattaaaaaa actggaaaat gtaggtgtac gtggccttcc       300
     acatcaattg cttactagct acttaacaaa cagaaagcaa atgttaagta ttaataattt       360
     actaagtgat gaagctaatg tcaaatatgg agtgccccaa ggaagtacct tggggcctac       420
     actcttcctc atatatataa atgacctttg tctcttgcga ctaaaacata ctaacattat       480
     aacatttgca gacgacactg tattaatttc acaagcaaac tcttctgaag aagtttatag       540
     aaatgccaat aatgacttca gtgtggtaat gaaatggctg gacaacaatt tgctctcgtt       600
     aaatattgcc aagaccaagt acctaacatt ttgtatacgc gaaaaaaata ccacgaccaa       660
     caccaacaag aatcactaca actaaaagca cattactgca gacttgacga ttctaattta       720
     atatgtaact gtcaaaagtt aacacaaaca caaagtttaa aatatttagg agttgttgtt       780
     gaccagcacc tttcctggaa agatcacata aattcactgt atggacgagt caagagattg       840
     atttccattt ttaagaatat acgatacata tgtgatcttc aattattgag aagtatttac       900
     tttgcgctgt gtaattcttt aataagttat ggcatcattg tttggggtgg ggccaataag       960
     acactattat tgagagtaga aagggctcaa cgtgctattc ttaaagtaat attttgtaaa      1020
     gattatagat accctactga cgcactctat aaagacttag caatgttaaa tgtaaggcaa      1080
     acatatttat tggcaatttt aaaagaccaa cacaaacact caatcgtggg aactcataat      1140
     caaagaagac gacaagacct agtgtttgaa cttcccacag ttaaatcagc ttttgcacgg      1200
     aaattctatc tctctctggc accacatatt tacaataaaa tatccaaatc ygtaaaactt      1260
     aaaaacctca ataattatac atttaaaaaa acagttgaca aatatcttaa agcactaaca      1320
     tataacgaca cagaaaaatt tatyaaacta atataatcat acttaatact cgaaaatgtt      1380
     ggaaaaaatt aaactcactc atcgctaaaa ttaatcactt cagacataca cacacgcaca      1440
     tacacacact cacacacacg caygcacaca cacrmaaacw crcwcacata caatcatatt      1500
     tacattttac atatatatat attmkwtwtw tmykttttat atttttattt tacatawaat      1560
     tttcttagcg tatattatat aattctttca tagaagtttt tattattrta ttttaatatt      1620
     atcaagaaaa ttcaacaaat aaatggctgc atctaaactt tttatatgta ctacattagt      1680
     aagaaaacaa gcatgcgagg aatactatcc taccgtcata cagtaaaact agttcggagg      1740
     gtagtgctaa tcaattattg ttagcttaac caaaattgta ttactgttaa ttatacgcca      1800
     tttattgtaa taggttaagg tttatatata taaataaata aataaataaa                 1850
//
ID   CR1-7_HMM   repbase;    DNA;    INV; 3835 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3835
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2784-2784 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           473..1543
FT                 /product="CR1-7_HMM_1p"
FT                 /translation="MSPRRFEWACCNNNNSSGERIVCTKCKSSFHSTCLQS
FT                 LPDRGSFANNKANWICPLCCRASKGLRNDNTPVRDSLSPNQSSNVSYRTKK
FT                 RVALSSPPEVPEIPVIQNEIREIIRDEIKAFMVDMKQTMSKLLSDELKVVK
FT                 EELVEVRGSMNFISGQYEDIKQKVLEKTDTINELVKENTXLQNTLSDVSRR
FT                 LNYLEQNSRATNVEIQCVPENKNENLYNLIDKLNTAIGADITESSVYNCTR
FT                 IAKTNRDSSRPRSIVVQFDSVKTRDKFLAASIKFNKLKKKEDKLNTTVMGC
FT                 SGEKRPVFVMEHLSPRNKKLHAAARVRAKEKGYSFVWVRNGRIFVRKNEQS
FT                 HFIIINDFKCLDKM"
FT   CDS           1561..3834
FT                 /product="CR1-7_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MISRYFGFKFKLLNIYYQNVRGLRTKTNEFYHKLCCS
FT                 DFDIIVLTETWLNSTVLSSEFMNDNYTVYRRDRCHCSSASNKRDGGGVLIA
FT                 VKKKFSSRRLLHLETDAEDLWVLIDLPLRPSIKFQICAVYFPPPTSRILLD
FT                 SFTDKFNISLATTENETCIVGDFNLGCIDWNPXSTLSYTSVLVQNLLDFIS
FT                 ANNLKQCNLVSNSSGKILDLVLTSFSECNVRPALDILSKVDVYHPPIFIEF
FT                 TLPGGGAMKPHAHSQRRNFFKADYEAINSYLQLVSWRNVFRSCEDVDGMVS
FT                 KFNEILMKAICQFVPYYVPKSRNYPHWFSQSLIKMIREKNKIRIKYKIYNN
FT                 PRDELEFLLIKKRCEDHAKFCYNTYIQKLESSIKSNPKFFWSHIKNKRGHR
FT                 DSYPSTLSYGSTSSSDGSRICELFASFFSSVYCSDESSQDSTELKTLGHRL
FT                 NSDSFTCLAFEKEEVLKKLRGLDATKGAGPDGIPPYFIKKCAHSLASPLVE
FT                 IYNTSLISGTFPDLWKTARVVPVHKNGDKSQVTNYRPISILSTLAKVFEAL
FT                 LCPYVQRYFHKYLMEMQHGFIKSRGTTTNLTSFIEMXSRNIDKNKQTDAIY
FT                 TDFRKAFDTVSHSILISKLSAYGVSGPLIRWFKSYLTNRSFAVVVKGFKSN
FT                 DLNIASGVPQGSHLGPILFNIFLNDISNCFLNSTPFIYADDIKFSREINTY
FT                 EDVSLLQDDLNRVLEWCKTNHIHLNSTKCSHIKFTRKHNPIKSSYAIERYT
FT                 LTEVEEQ"
XX
SQ   Sequence 3835 BP; 1271 A; 635 C; 710 G; 1212 T; 7 other;
     tgaaggtagt tcggagtagg tttgccaata aacagctctt gtgaatgttt tgttaaaata        60
     ttgtataagt ttaaattacc agtgtaaatc taagtaaaac taattattag cggtgtgatt       120
     attgtgtaga agtgttttct tagtaatcaa tggactataa agacggtttc aataaagttt       180
     gcatcaagtc atgtcagtgc ttttttaaca aactattttg ctagtcttgt gtctaaaagt       240
     cagtgttttg ctattgtttg atggccaaca acttatttaa taaatcagtg gtaattcatg       300
     aacaaaataa ctttgtaaat ctaaaattta tcaattcatc atacgacaac tgtgtagtgc       360
     gacaagatgc caatagatgg agctgcatta taaaatatta gtcttgtatt ctggtttcta       420
     acttatgata aaatctcaga aattataaat ctatataaag aaaaaaaaaa aaatgtctcc       480
     gagacgtttt gaatgggctt gttgtaataa caataacagt agtggtgaac gtattgtttg       540
     cacgaaatgt aaaagtagct tccatagcac atgtcttcaa tcattgcctg accgtggtag       600
     ttttgcaaat aacaaggcaa actggatttg tccgttatgt tgtagggcct ctaagggatt       660
     gagaaatgat aatacgcctg tacgtgattc cttaagtcct aatcaaagtt caaatgtgag       720
     ttatcgtacg aagaaacgag tagcgctctc gtctccccca gaagttcctg aaatcccagt       780
     aatacaaaat gagatacgcg agattataag ggacgagatt aaagctttta tggtagatat       840
     gaagcaaact atgtccaaat tgctgtctga cgaattgaag gtagttaagg aggaacttgt       900
     ggaggtgaga ggctcaatga actttatcag tggtcaatat gaagatataa agcaaaaagt       960
     attggagaag accgacacta ttaatgagct tgtcaaggaa aatacacwtt tgcaaaatac      1020
     attgagtgac gtcagtaggc gtttaaatta tttagagcaa aattcacgtg ctaccaatgt      1080
     tgaaattcag tgtgtacctg agaataaaaa cgagaattta tataatctta tagataaatt      1140
     aaatactgca atcggtgctg atattactga gagcagtgtt tataattgta cgagaatagc      1200
     aaaaactaat cgagactcga gtcgcccaag gtctattgta gtgcagttcg attctgttaa      1260
     aactcgcgac aaatttcttg cggccagtat aaaatttaat aaactgaaaa agaaggagga      1320
     taaattaaac acgactgtaa tgggatgcag tggcgagaag aggcctgtat ttgtaatgga      1380
     acacctttcc ccacgtaaca aaaaactgca tgcagctgct cgggtaaggg caaaggaaaa      1440
     aggctattcg tttgtgtggg tgcgcaatgg tcgaatcttt gttcgcaaaa atgagcaatc      1500
     tcattttatt ataattaatg actttaagtg cttagataaa atgtaattat aagttattgc      1560
     atgatttcaa gatattttgg cttcaaattc aaactcctaa atatttatta tcagaatgtt      1620
     aggggtttgc gtacgaaaac taatgaattt taccataaat tatgttgtag cgattttgat      1680
     attatagttc tcacggaaac ttggcttaac agcactgtac tatctagtga gtttatgaat      1740
     gataactata ctgtttacag aagagatagg tgtcattgct cttccgctag caataaaagg      1800
     gatggcggtg gtgtactaat tgccgttaaa aagaaattca gttccagaag acttcttcac      1860
     cttgaaacag atgcagagga tttatgggtt ttgatagatc ttccgttaag accttctatt      1920
     aagtttcaaa tttgcgctgt ttattttcct ccaccaacta gccgaattct tttggattcg      1980
     tttacggaca agtttaatat ttcattagca accacagaaa atgaaacatg tattgtwggc      2040
     gattttaact tgggttgcat tgactggaac ccaaamtcta ctttatccta tacctcagtt      2100
     cttgtccaaa acctccttga ttttatatca gcaaataatc ttaaacaatg taacttggtc      2160
     tcaaatagta gtggaaaaat actagatctt gtcctcacta gcttttcgga atgcaatgtc      2220
     agaccagcat tagatatttt gagtaaggtt gatgtatacc atcctccaat ctttattgaa      2280
     tttactttac ccggtggagg ggcaatgaaa cctcatgctc attctcagag acgcaatttc      2340
     tttaaagctg attatgaggc tataaattcc tatcttcaat tagtttcctg gagaaacgtt      2400
     tttaggagct gtgaagacgt ggatggtatg gtttctaagt ttaatgaaat actaatgaaa      2460
     gctatatgtc aatttgttcc atattatgtt cccaaatctc gtaactaccc tcattggttt      2520
     agtcagagct taatcaaaat gatcagagaa aagaataaaa tacgaataaa atataaaatt      2580
     tataataatc cccgagatga attagaattt ctgttaatta aaaaaagatg tgaagatcat      2640
     gccaagtttt gttacaatac ttacattcaa aagttagaga gctcaattaa aagtaaccct      2700
     aaattttttt ggtctcatat aaaaaataaa cgtggtcacc gagattccta cccatctaca      2760
     ctttcatatg gatcaaccag ttcctcggat ggaagcagaa tctgtgaact ctttgcctcc      2820
     tttttctctt cagtttattg ttcagatgaa tccagtcaag attcaacaga attaaaaaca      2880
     ctaggtcaca gattgaatag tgactcattc acatgtttgg cattcgagaa agaagaagtt      2940
     cttaaaaaat taaggggtct agacgcaacc aaaggagctg gacctgacgg tataccaccg      3000
     tattttatca aaaaatgtgc ccacagttta gcttcacccc ttgtggaaat atataacact      3060
     tctcttattt ccggcacatt tcctgacttg tggaaaaccg ctagagttgt tcctgtgcac      3120
     aaaaatggtg acaaatcgca agttacwaat tatagaccta tatctatact ctctacsctg      3180
     gctaaggtgt ttgaagcatt gttgtgtccg tatgtacagc gttattttca taaatactta      3240
     atggaaatgc aacatggttt tatcaagtcg agaggtacta caactaattt aactagcttt      3300
     attgaaatgm tttctcgtaa tattgacaaa aataaacaga cagatgctat atacacggat      3360
     tttaggaaag cttttgatac ggtatctcac tcaatmctta taagtaagct ctccgcttat      3420
     ggtgtttctg gtcctctaat acgttggttc aagtcatacc ttacgaatag atcctttgct      3480
     gtagttgtga aaggtttcaa gtctaacgat ctcaatattg catctggtgt gccacagggg      3540
     tcacatctgg gcccaattct attcaatatc ttcctaaatg acatatcaaa ttgtttttta      3600
     aattctacac cattcattta tgcagatgac ataaagttct cgcgtgaaat taatacctat      3660
     gaagatgtat ctctactgca ggacgactta aatagagttc tggaatggtg caaaaccaat      3720
     cacatccatc taaacagcac aaagtgttca cacattaaat ttactaggaa acataaccct      3780
     ataaagtcat cttatgccat agaacggtat acactaactg aagtggaaga acaaa           3835
//
ID   CR1-7_NVi   repbase;    DNA;    INV; 4435 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-7_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4435
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 934-934 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           305..1297
FT                 /product="CR1-7_NVi_1p"
FT                 /translation="MSSCKKQSKTYADIMANRQPIKSQRVPRIIVKSLKSE
FT                 NKDPKEFSKKVCNLLIEKKDIQTKQVKSINDSEIEIKSMNEKSAKATIELL
FT                 SRKLSNNYKTTIEKIESPKMKIVGVDNYNKMNLEDLEKDLNNRNFNEYDEK
FT                 CKVLHINKNNSTKTSSIIIEVPRIIYKHIKDNQNRIFIGYQSCKVWDLINI
FT                 KPCYNCGRFGHNPQKCRNEPCCLKCAGEHLTMQCDNSSNSTCINCFFSNSK
FT                 YKTKFEVNHMANDTEKCAILKSKINRYIDMTDYPMRPTIPKYLGKVEIHKE
FT                 IHKETTTVIKSPSKLLKNSQLSTSAPILPLRTKTQRDK*"
FT   CDS           join(1297..2340,2368..3108,3032..4192)
FT                 /product="CR1-7_NVi_2p"
FT                 /translation="MEQHIDLIEELQKEVLQEEISYPDLKTLNKNLYKNDS
FT                 YILHLNIRSFLNANFNKLEIFIKSLKIKPSIIVCTETWKMFNCQIFALKGY
FT                 KLYYNNGKINQNDGVVVYIQDGISETTEVIEIGKLKILNTRITLSNNSNVQ
FT                 LSSLYRCHDLSSLEFIANLKTYVNIKKNLKNHLIIGDFNIDIMKEDNYSQE
FT                 LLNNMLEKGFAPGFRHTTRPKNGSGNGTCIDNIYIKTKSIDTKSFKLMIPF
FT                 TDHYPIFLKLNKPPKPKKEIVRHYYNYTKLQRIASSKNWHIIETMHDPNSA
FT                 TAYLINEIQDCLEKSKSLINMKISKKTPRKEWITKAIMVSCEKKEQLYKKN
FT                 AQRTKEYYIHILYTKRLDKLIYEAKLRHDRNFFTNNSNNTKQLWKHIKNKL
FT                 GTNSQKDTTINKIAIDKNCTIEEPIQIANYMNSFFCKIGKDLSDKIINPQG
FT                 KKLELPPINNNTIFIKPTNNSEILQIIQNMKMKNGGIDNIPSKALKVLSPL
FT                 IVNALTHIFNLCIDKSIWPDALKSAEVVPIFKSGSKMEITNYRPISLISNL
FT                 AKILEKIIYNRFQSFFDKFNLLAKNQYGFRKKYRDQRCSKLYHEHNLQPKI
FT                 NMVLEKNIGTKDALSYITNIIYSKLDKSKPIAITFLDLAKAFDTVNHAILL
FT                 DKLYNYGIRGKAHKIITSYLCNRKQKVKIGTADSRYETVITGVPQGTILGP
FT                 LLFIIYVNDLLVDRTESTISYADDTAIYTTDDTWTKVENKMNMYLEDISTW
FT                 LLLNKLSLNISKTVYMTFGNYCDSVPKKNDIKIFIQGNELNRVEQYKYLGI
FT                 NFDFNLKWDKHIEYIIKKTKYLIYILYKLSKYMQTDILKIIYYAFFHSIIT
FT                 YGNIAWGGAYKNNLELLQRSQNRILKIINKNKFDQNNPLNLKQIFAYECVI
FT                 YHYNELKNQHMTSNSITRNKLIKPPKCSKAVSDKNNHIRAIQVFNCLPKSN
FT                 PNLKHLDISKNYNKKKVKKWISTHIL*"
XX
SQ   Sequence 4435 BP; 1921 A; 626 C; 659 G; 1229 T; 0 other;
     agtatcagta gtaatttgtt tagtgtgtga aaacgtttat cataaaagtg attacgacaa        60
     gtgtaaagac aagaaataca ttagtaatat aatatgccca gaacacgtgg agctaaacat       120
     aaccttgaaa gatcaagagc ctaggctaaa tgattcagca aaaattttaa ttgcaagtat       180
     caaaagtact aaagaagatc aaattaaaca taaattcaga actggaaaat ctgcatgttg       240
     agaataaact attgaaacaa ctgaatgaag aattaatgga caaaaatgca ctattaaaag       300
     aactatgagc tcctgtaaga aacaatcaaa aacatatgct gatataatgg caaatagaca       360
     acctatcaag agtcaaagag taccaagaat aattgtcaag agtcttaaga gtgaaaacaa       420
     agatccaaaa gagttttcga aaaaagtatg caatctgtta atagagaaaa aagacataca       480
     aacaaaacaa gtaaaatcaa taaatgatag tgagatagaa ataaaaagta tgaatgaaaa       540
     aagtgccaag gctacaatag agttactcag tagaaaacta tctaataact acaaaacaac       600
     gattgaaaaa atagagtcac ctaaaatgaa aatagttgga gtggataact acaataaaat       660
     gaatcttgaa gatctggaaa aggacttgaa taatagaaat tttaatgagt atgatgaaaa       720
     gtgtaaagta ttacatataa ataaaaataa ttctacaaaa acatctagta taataattga       780
     agtgccaaga ataatatata aacacatcaa agataatcag aatagaattt ttattggtta       840
     tcaaagctgt aaagtgtggg acttaataaa catcaagcca tgctacaatt gtggaagatt       900
     tgggcataat ccgcaaaaat gtagaaatga accctgttgt ctaaaatgcg caggagagca       960
     tttaactatg caatgtgata attcaagtaa ttctacatgt atcaattgtt tcttcagcaa      1020
     ttctaaatat aagacaaagt ttgaggttaa tcatatggcc aatgacacag agaaatgtgc      1080
     aatattaaaa agtaagataa acagatacat agatatgact gattatccta tgagacctac      1140
     tatacctaaa tacttaggta aggtagaaat ccacaaagaa attcacaaag aaaccactac      1200
     ggtaattaaa tcgccaagta agcttctgaa gaattcgcaa ctaagcacta gtgcaccaat      1260
     actacctttg aggacaaaaa cgcaacgaga taaataatgg agcaacacat cgacctcatt      1320
     gaagagctac aaaaggaagt attacaggaa gaaatatcat atcctgatct gaaaactctt      1380
     aataagaatt tatacaaaaa tgacagttat atcttgcatc taaatatcag aagttttcta      1440
     aatgccaatt ttaataaatt ggaaattttt attaagagtt tgaagattaa acctagcata      1500
     atagtatgta cagaaacgtg gaagatgttt aattgccaaa tttttgcact aaaaggttat      1560
     aaattgtatt acaataatgg taaaataaat caaaatgatg gggtagtagt ttatatacag      1620
     gatggtatat cagaaacaac agaagtgata gaaataggta aactcaaaat attaaacaca      1680
     cgaataacgt taagtaacaa tagcaatgtt caattatcat ctttatacag atgccatgat      1740
     ctctcttctc tagaattcat agcaaactta aaaacatacg tcaatataaa aaaaaatctt      1800
     aaaaatcact taatcattgg tgactttaac atagatatta tgaaagaaga taattatagc      1860
     caagaactat taaataacat gttagaaaag ggttttgccc caggatttag acacacgaca      1920
     agacctaaga acggtagtgg aaacggaaca tgcattgaca atatctatat aaaaactaaa      1980
     tctattgaca ctaaatcatt caaacttatg atcccattta ccgaccatta cccaatcttc      2040
     ttaaagctga ataaaccacc taaaccaaaa aaagagattg ttcgccatta ttataattac      2100
     actaaactac agaggatagc tagcagtaaa aattggcata tcatagaaac aatgcatgat      2160
     cccaactccg ctacagccta cttaataaac gagatacagg attgcttaga aaaatctaaa      2220
     agtctgatta atatgaaaat aagtaaaaaa actccaagaa aggagtggat cactaaagct      2280
     atcatggtct cgtgcgagaa aaaagaacaa ttatacaaaa aaaatgcgca aagaaccaaa      2340
     taataataat attaaagtag agtataagaa tattatattc atatactcta taccaagagg      2400
     ctagataagc tgatttatga agcaaagctt aggcatgata gaaatttctt tacaaataac      2460
     agtaacaata ctaaacaact ttggaaacac attaagaata agttaggaac aaactcgcaa      2520
     aaggatacaa caattaataa aatagcgata gataaaaact gtacaattga agaaccgata      2580
     caaattgcca actacatgaa ttcctttttt tgtaaaatag gaaaagactt aagcgacaaa      2640
     attattaacc cacagggtaa aaaattagaa ttacctccca taaacaataa tacaatcttt      2700
     atcaaaccaa ctaataactc agaaatactg caaattattc agaatatgaa aatgaaaaat      2760
     ggtggaattg ataatattcc ctccaaagct ctgaaagtac tatcaccttt aattgttaat      2820
     gcattaacac acatatttaa tctttgtata gataaatcaa tatggccgga tgccttgaaa      2880
     tcagcggagg tagttcccat tttcaaatct ggtagcaaaa tggagataac taactataga      2940
     ccaatatcgt taatatctaa tttagcaaaa atattagaaa aaataatata taacagattc      3000
     caatccttct ttgacaaatt taatctacta gccaaaaatc aatatggttt tagaaaaaaa      3060
     tatagggacc aaagatgctc taagttatat cacgaacata atttacagta aactagacaa      3120
     aagcaaacca atagcaatta cctttctaga tctggctaaa gcttttgata cggtcaatca      3180
     tgctatttta ctagacaaat tgtataacta cggtataagg ggtaaagcgc acaaaataat      3240
     aactagttac ttatgtaata gaaaacaaaa agttaaaata ggaacagcgg acagccgtta      3300
     tgagacagta attacgggag tgccacaagg gacaattctt ggtccacttt tatttataat      3360
     atatgtcaat gacctgcttg tagataggac tgaaagtaca atctcatatg ctgatgatac      3420
     agctatttat acaactgatg atacttggac caaagtggaa aataaaatga atatgtacct      3480
     agaggatata tctacttggt tgttgcttaa taaattatct cttaatataa gtaaaactgt      3540
     atatatgaca ttcggtaatt actgtgatag tgttccaaaa aagaatgata taaaaatatt      3600
     tatacagggt aatgaactga acagagttga acagtataag tatctgggta ttaattttga      3660
     tttcaattta aaatgggata agcatattga atatataata aagaaaacta aatatttaat      3720
     atatatatta tataaattgt caaagtacat gcaaaccgat attcttaaaa ttatatacta      3780
     tgcatttttc cacagcataa taacctatgg aaacattgca tggggtggtg cgtacaaaaa      3840
     caacctagaa ttactacaaa gatctcagaa tagaatatta aaaattataa acaaaaataa      3900
     atttgatcaa aataatccat taaatcttaa acaaattttc gcttatgaat gtgttatcta      3960
     tcactataat gaacttaaga atcagcatat gacatcaaat agtataacta gaaacaaact      4020
     tattaaaccg ccaaaatgct ctaaagctgt tagtgataag aataatcaca ttagagcgat      4080
     acaagtattt aattgtctac ctaaatctaa tccaaatcta aaacatctag atatctcgaa      4140
     aaattataat aagaaaaagg taaagaaatg gatcagtact catatattgt aaaataaaaa      4200
     aaaaaaaaaa aaaaaaaaga ggtgcaatct tagtaagatt ttcattttgt tagtctttta      4260
     gtttgtaagt tagttttgta agatcatttt attaagtata tataccagac ctatgtacag      4320
     gtagctgtgt ctacctctat aggatgtcag ttaacccaga tataccaagt atatcttgga      4380
     gttaactata acatgtattt attactctgg atgaataaat aaataaataa ataaa           4435
//
ID   CR1-80_AAe  repbase;    DNA;    INV; 4750 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-80_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4750
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1168-1168 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           288..1085
FT                 /product="CR1-80_AAe_1p"
FT                 /translation="MAFCERMIHLRCSATKLNKPFVKIVHDSPNLFWMCDE
FT                 CAKLMKIARFKSVVSSFGDAFKAIADRQEMVHAEIRKELAIQGQQIAQLSK
FT                 RMAPTSPFLRESASSSRQPPSKRRRDDELVFNPAVTKPLLGGTKEMSNAGI
FT                 VTVPEPVQLFWVYLSRIHPSVKPEAIEKLVKDCLQSEGTIKAVPLVKRGID
FT                 STRLSFISYKIGIDPKLRDAALSPDTWPKGLLFREFEDNSSKNLWLPSLNT
FT                 PTIMVSPEVGASQFSTPTTGMDLSS"
FT   CDS           989..4552
FT                 /product="CR1-80_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVTILEYADHHGISRSRSLAVLHSHHRNGSFKLTSTR
FT                 LQSSNVDQAAIVSSIPERTACRLMGALDPHDTVEQAVSCHRSRSGPVVVLG
FT                 DRVSQPPLSGKYASIYSNSSPDQFPCSSTLSVHAETVDAENSIWKSSSECL
FT                 PMLALDSTPPGHPERTLESPMEALNPSDAVLPSAGSVHQSRSGPVVRCGER
FT                 VFQASNHGEYFPSVRPQSSPDIYMDSRNISDPVPKRFEDIVVYYQNVGGIN
FT                 SCVEDYRLAVSGSSFDIIVLIETWLDSRTLSSQIFGPDYEVFRCDRSPDNS
FT                 KKSTGGGVLVAVRRELKARAVENEAWKCLEQVWLCVDLRDRKLFLCALYVA
FT                 PDLTRDNAVFETHSQSVFAVIDTASPVDEVLVLGDFNLPTVSWKLSHNGFF
FT                 YPDPERSVIHGCVAGLLDSYSAAMISQINHVVNENGRSLDLCFVSTQDEAP
FT                 FISVAPCPLVKDVPHHPPLIISVERTLLVNCVDRPATVSYDFQNADHHSIA
FT                 EVLSSIDWDNVLDRNEVDTAALTFSHVLAYVIDRHVPKRVHQVSRLPWQTA
FT                 ELRKMKSIKRAALRKYTKFRTPSLRCHYVRLNHEYQRLSRQCFLRYQREIE
FT                 RKFKLKPKSFWKYVNEQRKTYGLPSSMELNGRTGSSTQEICQLFAEKFSMV
FT                 FSSETLSSHEVSLAARNVPLNDQALGAIEIDDGMISEAAKQLKASNNPGPD
FT                 GVPSVLLKKHIAGLLSPLLFLFRSSLSSGIFPSNWKIAHMFPVHKKGSKRN
FT                 VDNYRGITSLCAVSKLFELVIMKPLLSHCKQHLCPDQHGFTAGRSTATNLL
FT                 CLTSFITDSMVERSQTDVIYTDLSAAFDKLNHTIAIAKLERLGVCGSLSSW
FT                 FKTYLTGRLLKVAIGDCRSGSFYATSGIPQGSHLGPLIFLIYFNDVHSAIR
FT                 SPRLSYADDLKMFLKIHSIADCGFLQQQLDHFADWCFLNRMVVNPKKCSII
FT                 TFTRKRQPIIFDYCLLGTTIDRVNQVKDLGVILDSKLTFKPHVSYIVDKAS
FT                 RTLGFIFRIAKNFTDVYCLKSLYCSLVRSTLEYCSAVWSPAYDNGSERIES
FT                 VQHRFLRFALRKLPWRNPFQLPSYESRCQLIDLELLRTRRDVCRALTVADT
FT                 LQGRIDCAFILEKNDLHAQSRSLRNNVMLRLPLRRTNYGMHGAIIGIQRVF
FT                 NRIALLFDFHLTRESLRRRFSEFFAGRSG"
XX
SQ   Sequence 4750 BP; 1237 A; 1161 C; 1039 G; 1311 T; 2 other;
     gttgtttctc gtgtctcccg ttgaataaac cgatcacgct ccgstgtata gtggacatta        60
     acgaatagca agcacaatat tgtgaaaaca tctagaaaat ccgatcatac tgagcgcggt       120
     gaactattgt ttttgtttgt ttttcttcac tgttccctct gtgcactttc cgggctaccg       180
     tacaaaaatt aagggcatcc ccatcgcggt tagagcaatc cccatcgtcc gacgcttgtg       240
     atcactgcgc gaagccggta aaaagtgatg acgaacacat cacttgcatg gctttttgcg       300
     aacggatgat tcaccttaga tgctcggcta caaagctaaa taaaccattt gtgaaaatcg       360
     ttcacgacag cccaaatttg ttttggatgt gtgacgagtg tgcgaagctt atgaaaatcg       420
     cacgattcaa atcggtcgtt tcatcgttcg gcgatgcctt taaggctatt gccgatagac       480
     aggagatggt acatgccgag attaggaagg aactggcgat acaaggacaa caaatcgctc       540
     aattgtctaa acgaatggca ccaacttccc cttttctgcg agaatctgct tcatcttctc       600
     gacaaccacc gtcgaaaagg cgccgtgacg atgagttagt tttcaatccg gctgtcacca       660
     aaccacttct tgggggcact aaggaaatgt caaacgccgg catagttacc gtccctgaac       720
     ctgttcagct gttttgggtg tatctttccc gtattcatcc gagtgtcaaa cccgaagcca       780
     tcgaaaaatt agtgaaagac tgtttgcaga gcgagggcac cattaaggct gttccacttg       840
     taaaacgcgg gattgattca actcgtttga gcttcatatc ctacaagatt ggaattgatc       900
     caaagctccg cgatgccgct ttgagtccag atacatggcc aaaaggatta ttgtttcgcg       960
     agttcgaaga taatagctca aaaaacttat ggttaccatc cttgaatacg ccgaccatca      1020
     tggtatctcc cgaagtcgga gcctcgcagt tctccactcc caccaccgga atggatcttt      1080
     caagttaact tctaccagat tacaaagcag caacgtagat caagcagcca tcgtttccag      1140
     tataccagaa cgcaccgcct gtcgccttat gggagccctc gatcctcacg acacagtcga      1200
     gcaagctgtt tcctgccatc ggagtcgttc tggtcctgtt gtcgtgcttg gtgacagggt      1260
     ctcccaacct cctttatcag gcaagtacgc ttctatatat agcaattctt cgcctgatca      1320
     atttccgtgt tccagtactc tatcagttca cgccgagacc gtcgacgccg agaattcgat      1380
     ttggaaatct tcatccgaat gtctaccaat gctggccctg gactcaaccc ctcctggaca      1440
     cccggaacgc actctagaaa gcccaatgga agcccttaat ccctctgacg cagtcctgcc      1500
     ttctgctggc tccgttcatc aaagtcgttc cggtcctgta gtcagatgtg gagagagggt      1560
     cttccaagca tccaatcacg gcgagtattt tccttctgta cgccctcagt cgtcgcctga      1620
     tatttacatg gattccagga acatcagcga tcccgtacca aaacgattcg aggacatcgt      1680
     agtttactac caaaatgttg gtggaattaa ctcatgtgtg gaggactacc gcttggctgt      1740
     ttcgggttcc agttttgata tcatcgttct aatcgagacg tggcttgatt ctcgaacttt      1800
     gtctagccaa atttttggac cagattacga agttttccgt tgtgatcgga gtccagataa      1860
     cagcaagaaa tctactggtg gtggcgtact cgttgccgtt cgacgagaac tgaaagcgag      1920
     ggccgtcgaa aacgaagcct ggaaatgcct agaacaagtt tggttatgtg ttgatctccg      1980
     cgatcgaaaa ctgtttctat gcgcgcttta tgttgcaccc gatctgaccc gagacaatgc      2040
     tgtcttcgaa actcactctc aatcagtttt tgctgttatc gatactgctt cacctgtcga      2100
     tgaggtcctc gttttaggtg acttcaacct accaaccgtc tcgtggaaac tatcacacaa      2160
     tggtttcttc tatccggacc ccgaacgctc cgtaatccat ggttgtgtag ccggtctctt      2220
     ggacagctat agtgccgcta tgatctccca gataaatcac gtagtcaatg agaacggacg      2280
     cagcttggat ctttgcttcg tcagtaccca ggatgaagca ccctttattt cggtggcccc      2340
     atgcccacta gttaaggatg tccctcatca ccctccattg attatttccg tcgaaagaac      2400
     cctcctcgtc aattgcgtcg atcgtccagc aactgtatct tatgatttcc agaacgccga      2460
     ccaccatagt attgcggaag tgttgagtag cattgactgg gacaatgttt tggatcgtaa      2520
     cgaagttgat actgctgctt taaccttttc acatgtcttg gcatacgtca ttgacaggca      2580
     cgtcccaaaa agagtgcatc aagtttcgcg acttccttgg cagactgcag aactgcgaaa      2640
     aatgaagtca attaaaagag cagctctccg caagtatacc aaatttcgaa caccctctct      2700
     aagatgccat tacgtgaggc tgaaccacga atatcaacgc ttaagtcgtc aatgtttctt      2760
     gcgataccaa cgtgaaatcg aacgtaaatt caaattgaag ccaaaatctt tctggaaata      2820
     cgttaacgag cagcggaaga cgtacgggct gccatcttca atggaattga atgggagaac      2880
     gggttcatct actcaggaaa tttgccagct attcgcagag aagttctcta tggtttttag      2940
     cagcgagact ttaagcagcc atgaagtttc acttgcagcc agaaatgttc ctttgaacga      3000
     ccaagcatta ggtgcaatcg aaatagacga tggaatgatc tcagaagcag caaagcaact      3060
     gaaagcgtcc aacaatcctg gacctgatgg agtaccgtcc gtactcctaa agaaacacat      3120
     cgccggcttg ctgagccccc ttcttttttt atttcgttcg tcactttcga gcggcatatt      3180
     tccttctaac tggaagattg cacacatgtt tccggtgcac aaaaaaggaa gcaagcgcaa      3240
     cgttgacaat tacagaggga ttacgtcgct atgtgccgtg tcgaagcttt tcgaactcgt      3300
     tatcatgaaa ccacttctgt cgcactgcaa gcaacatctt tgtcctgatc aacacgggtt      3360
     tactgccggt cgttccaccg ccaccaattt gctctgtttg acatcgttta taaccgacag      3420
     catggtagaa cgatcacaaa cggatgttat ttacaccgat ctgtccgccg catttgacaa      3480
     gctgaaccat actattgcga tcgctaagct tgaaaggctc ggcgtctgtg gcagtctctc      3540
     tagttggttc aaaacttatt taaccggtcg cctgttgaag gtggcgatag gagactgcag      3600
     atctggcagc ttttatgcta cgtctggcat accccaaggt agtcacctgg ggccattgat      3660
     cttcttaatc tattttaatg acgttcattc ggccatcaga agtcctcggc tatcatatgc      3720
     tgatgatctc aaaatgtttc ttaagatcca ctccattgcc gactgtgggt ttttgcaaca      3780
     acagcttgat cactttgccg attggtgttt cctgaaccgt atggtagtta acccaaagaa      3840
     gtgttccatt ataacgttta caaggaaaag acagccgata atatttgact actgcctgct      3900
     gggaactaca atcgatcgtg tgaaccaagt aaaggatctc ggggtgattc tggattcaaa      3960
     gctgacattc aagccgcatg tttcgtacat tgtcgacaag gcatccagaa cattgggatt      4020
     catcttcagg attgcaaaga acttcacaga cgtctactgc ttaaagtccc tatattgctc      4080
     gctcgtgcgc tccactttgg aatactgttc cgcggtctgg agccccgctt acgacaacgg      4140
     ctccgaaagg attgagtccg tacagcaccg ctttcttcgg tttgcacttc ggaaactgcc      4200
     atggagaaac ccgttccaac tgccaagcta cgagagtcga tgccagctga ttgatctaga      4260
     gctacttcgc accagaaggg acgtctgcag agctcttacg gttgcagaca cgctacaagg      4320
     acggatagat tgtgccttca tcctggaaaa aaatgattta cacgcccagt cacgatcact      4380
     ccggaacaat gttatgctac gcttgccact acgaagaact aactacggaa tgcatggggc      4440
     gatcatcggt atccagcgcg tcttcaacag gattgcccta ctgtttgact tccacctcac      4500
     ccgtgaatcg cttcgtcgaa gattttcgga gttttttgct ggtagaagcg gataacgaca      4560
     acgattatat gttaaatgtt tttttttaat tgcctgacaa mgtttatgat tatgtttgag      4620
     actgtgacca agattatgtt cgtgatttag tttttttttt aatttgtatt gctgtcctta      4680
     gtttaaacaa tatcattggg gctacgaagc ctgttgataa atttaataaa taaataaata      4740
     aataaataaa                                                             4750
//
ID   CR1-81_AAe  repbase;    DNA;    INV; 2715 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-81_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2715
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1169-1169 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >95%
CC   identity. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2239
FT                 /product="CR1-81_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="SQHQRGGGVLIAVKKALQSNVILINDANQLEQISVRI
FT                 TYGTMSLVVCTVYLPPNTEPALYQQHAASVNQLCKLLGTQDEIVVLGDYNL
FT                 PYLRWRFDDDIGAFLPINASSEQEISLVEDIVATGLMQMNHLLNSNERLLD
FT                 LAFVSNASVCELLEPPLPLMKVDRHHTPFVLTLDVIQTPLENRKNETFFDF
FT                 RQCNYDELNAEIAQINWRDILAFGSLDDAVTRFYSELNVIFERHVPRRSRA
FT                 CRPDNKQPWWNAQLRNLRNRLRKARTRYFRVRNRLNRDAVRDLESQFNELN
FT                 VSCFQSYIDRLESNMKDDPKQFWSYLRSRTTSRGFPQLINYDGKTATTPDD
FT                 AVKLFSSFFQSVLSITPPPSSASYLSALKTFDLNLQPTSFTQHEVYKKLCS
FT                 IDGSKGPGSDGLQPSFIKACSASLAEPAALLFNRSLAESVFPAKWKEALIT
FT                 PIHKAGNVHDVKNYRGISILSCLPKVFESMLLDFLYPAVRHIITEDQHGFV
FT                 RKRSTTTNLMSYVSTLIDKIEKRQQIDAVYVDFTKAFDRVPHQLAVEKFQR
FT                 MGFPDWLTKWVLAYLINRSASVRLGTTLSDPFEITSGVPQGSHLGPLLFIL
FT                 FVNDLCSELKSSKVMYADDLKIFRVINSPVDCCALQMDIDKILDWCSRNGM
FT                 DVNIAKCNVITFTRKRSPTVFEYSMHGATIERVRLVKDLGISLDCKLRFVE
FT                 QISSVIAKAYAVLGIIRRNTKDFRDVYCLKALYIYHLFAAFWNMEL"
XX
SQ   Sequence 2715 BP; 768 A; 598 C; 573 G; 776 T; 0 other;
     tagtcaacat cagcgaggtg gcggagtttt gatcgctgtt aaaaaggctc tacaaagtaa        60
     tgtaatacta attaacgatg ccaatcagct tgagcagatt agcgttcgaa tcacctatgg       120
     aactatgtca cttgtcgttt gtactgttta tcttccaccg aacactgaac ctgctcttta       180
     tcaacaacat gctgcgtctg ttaatcagct atgcaaactg ttgggcacgc aggatgaaat       240
     cgtagttctt ggtgactaca acttgcccta ccttcgttgg agatttgatg atgacattgg       300
     agcattctta ccaatcaatg cttcttcaga acaagagatt tctttggttg aagacattgt       360
     ggctacagga ttaatgcaga tgaatcactt gctcaactcg aatgaaaggt tactcgatct       420
     ggcatttgtg agtaacgcca gtgtatgcga attactggaa ccacctttac ctctgatgaa       480
     agtcgaccgt caccatacgc cttttgtttt gaccctcgat gttatacaaa ctccattaga       540
     aaataggaaa aacgagacct tcttcgattt ccgccaatgt aattatgacg aattgaatgc       600
     tgaaatcgca caaataaatt ggcgggatat tttagccttt ggatcattgg acgatgctgt       660
     taccagattc tacagtgaac tgaatgtaat tttcgaacga catgttcctc gcagaagtcg       720
     tgcatgtcga cctgataata aacaaccatg gtggaatgct caacttcgca atcttcgtaa       780
     tcgactgcga aaagcacgga cacgttattt tcgagtgaga aatcgtttga acagggatgc       840
     agtacgtgat cttgaatctc aattcaatga actgaacgtg tcatgcttcc agtcatacat       900
     agaccgacta gagagcaaca tgaaagatga tccgaaacaa ttctggtcct atcttcgcag       960
     tcgaacaaca tctcgtggat ttcctcaact cataaactac gacggcaaaa ccgcaacgac      1020
     gccagatgat gccgtgaaac ttttctcatc tttcttccaa agcgtattga gtattacccc      1080
     accgccctct tcagcatcct atttgagcgc tctcaagaca ttcgatttga atctgcagcc      1140
     tacatcattc acgcaacacg aggtttacaa gaagctatgt agcatcgatg gttccaaggg      1200
     accaggatcc gatggacttc aaccttcctt catcaaagcg tgctctgcgt ctttagctga      1260
     accagcagct cttctgttca accgttctct tgctgaaagt gtttttccag ccaaatggaa      1320
     ggaggctctt attacaccga tccacaaagc cggcaacgtc catgatgtca aaaactacag      1380
     gggaatttct atactcagtt gtctaccgaa agtttttgaa agcatgctgc tagattttct      1440
     gtatcctgcg gtccgacaca ttattactga agatcagcat gggtttgtca gaaagcgatc      1500
     tacaactacg aacctaatga gctacgtgtc gacactgatc gataagatag aaaaacgaca      1560
     gcaaatcgat gcagtctacg tggattttac taaagccttc gatagagttc ctcatcagct      1620
     agcagttgaa aaattccagc gaatgggttt ccccgattgg ttgacaaaat gggttttggc      1680
     gtacctcatc aaccgctcag catcagtgcg acttggaaca acgctttcag atccattcga      1740
     gattacttcc ggcgtcccgc agggcagcca tcttgggccg cttctgttca tactatttgt      1800
     gaatgacctc tgcagcgagt tgaagtcatc gaaggtgatg tacgcagatg atctgaagat      1860
     ttttcgagta atcaattcgc ctgtggactg ttgcgcctta cagatggaca ttgataagat      1920
     cctagattgg tgttcaagaa atgggatgga tgtcaacatc gcgaaatgta atgttatcac      1980
     cttcacgcgg aaacgttcac cgacggtttt tgaatattca atgcatggtg ccacgattga      2040
     acgagttaga ctggtcaagg atctgggtat ctcgcttgac tgtaagctcc gttttgtcga      2100
     gcagatttcg tcagtgatag caaaggctta cgcggttctt ggaattatca gacgcaacac      2160
     taaagatttc agagacgtgt actgccttaa ggctttatat atatatcact tgttcgcagc      2220
     attttggaat atggagttat agtttgggcc ccgtatcact ctgtacacat caatcgactt      2280
     gaacgagttc aaaaaagttt tattaggtat gcactccaga gactaccttg gcgaaatagg      2340
     atgctgctgc cgccatacga gcatcgctgt gcactcgtcg acttacctac actacgcaac      2400
     aggagaactc ttctaaagca gcttttcatt tttgatctgc tcgaaaataa catcgactgc      2460
     tctggtctgt taggcaaatt aagtttcaac acccctgtga ggctcctacg gaggactgca      2520
     ctattccgac acgctgctca tcgaacgtta tatgggcaaa ataatccgct tgatgtatgt      2580
     tgtgaaatgt ttaataatgt gtatcacttg tacgatttta acatagctaa ggaaacattt      2640
     agattaagga ttctacggaa ttgaagtctg tgcgatgtat ttttatttaa atcgaagacc      2700
     aaataaatca aatca                                                       2715
//
ID   CR1-82_AAe  repbase;    DNA;    INV; 4308 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-82_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4308
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1170-1170 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..934
FT                 /product="CR1-82_AAe_1p"
FT                 /translation="MENCCAKCCQAITGIDSXTCRGYCGSVFHMNCSGVSR
FT                 ALMNYFTSXRRNLFWMCDKCANLFENSHLRAITRHADEKTPLTSLTDAINN
FT                 LQTEIKKISIKPASTAPIFNRWPLINEPNRPAKRLREIDPVGRIPLECQSG
FT                 SKQHNLNVVSVPICEKPASKLWLYLSRIRTDVTNEAIAEMVKANLELETDP
FT                 DAVKLVSKGADVSNMSFISFKVPLQNFGSLPRQLRFHHQ"
FT   CDS           855..4187
FT                 /product="CR1-82_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ATCPSSRSRCRSKISEAFHVNSDSITNSXVTCSSDQL
FT                 IVSHRFTVHPCYSTSLHSESGRSVAHTGQTDDSFVTARCCRVHLGRTAISP
FT                 KGVLEPPDQVVHAVSSCQRSRPGPSVVVGDRISRQPLSGKYASGCNVNLPE
FT                 ISSISSVSVDSHAIDSRKIWVYYQNVRGLRSKIDAFFLAARDSNFDIIVLT
FT                 ETGLNDRINSIQLFGTSYNVYRCDRSDLNSVKTCFGGVLIAISKRYTSALA
FT                 EISHGRYLEQICVACTVQGMQLFICAIYIPPDKSRLVDVMETHVASIRELC
FT                 DLQQDDGAVLVCGDYNQPRLKWLRQEEETAVSESQITPSSSALIDGMNFLN
FT                 MHQYNSITNQLGRTLDLVFGSDNLRLTVDESVTPLLRVDNHHPPLVISIPT
FT                 AECTPLRNSTSNHRSHMLNYRRIDFDALQSFLEGFDWDSRLNNLEIDDMTT
FT                 VFCNVITEWLDTNVPSKRKPVSPAWSTPLLRDLRRKKNSCQRKLRCNRNYA
FT                 NKRNFNIASQAYRKLNSTLYRSYVQRIQFSLRSNPREFWKFVNSKRKNPSI
FT                 PSNVYLDHSNANTNASACELFATHFSSVFADCPSTEDEVGASISAVPMNIV
FT                 DLDSFRVTPEMVISATKKLKNSFTPGPDKIPAIVYVRCCDAIAQPLCRIFN
FT                 KSFDQRVFPGIWKQSFMFPVHKKGDRHDVRNYRGITSLSAGSKLFEIIVGN
FT                 FLINQTMNYISTDQHGFMPGRSVTTNLLEFTTICANQMESKAQVDVIYTDL
FT                 KAAFDRIDHEILLRKLLKLGASERLVCWLRSYLVGRTLRVQFGNELSNTFT
FT                 NKSGVPQGSNLGPLLFSLYINDAALLLGPNCKSIFADDAKIYVSVRTIEDC
FT                 HHLQALLDRFVNWCRRNRLTISITKCSAMTFHRIERPIIFDYKIDGILLNR
FT                 VDQVCDLGVQLDTKLTFIPHMTEIIAKANRQLGFISKIAQNFTDPYCLKSL
FT                 YCALVRPILETASVVWTPHQLTWNLRIERVQKRFIRFALRSLPWRDPVNLP
FT                 PYPDRCQLLNLDTLERRRNIAQISTAAKIISNELNTPGLLSRIDFRASRWT
FT                 RNTAVIQHRFHRTTFGYNEPFSAMLRTFSIVEEEYEFGEPAKRFVNRIMRL
FT                 RLV"
XX
SQ   Sequence 4308 BP; 1161 A; 1012 C; 893 G; 1230 T; 12 other;
     atcgaagttt catagtctgc tgggmtamtt tgtgcttaat cagtgaagtg gcttttggtg        60
     aagtggtgac aaagwcttac cttcttcatc ccccgtcatt tttttctgtg tgcagcgcca       120
     tcttgcgtca aaaaattkaa actgcagttg cgtgmaatct ccagtccaag ttcctgaacg       180
     tcgtcgacat agtgtttcat caccgcgtag tatactgcka ggcgctttcg attcgcawac       240
     tasaatcatg gaaaattgtt gcgcaaaatg ctgtcaggca attactggca tcgattccgw       300
     tacatgccgg ggatattgcg gcagtgtgtt tcatatgaat tgctctggcg tgtcacgcgc       360
     tctgatgaat tatttcacat ccsaccgcag aaacctcttt tggatgtgtg acaaatgtgc       420
     caatttgttt gagaattctc atctacgagc cattacacga catgcggacg aaaaaactcc       480
     cttgacgtcg cttactgatg cwatcaataa tttgcaaaca gagataaaaa agatctcgat       540
     taagcctgcc tcgacagctc cgatattcaa tcgatggccg ttgattaacg aaccgaatcg       600
     tcctgctaaa cggcttcgtg agattgatcc tgttggacgc ataccattgg aatgtcaatc       660
     tggatcgaag cagcataacc tgaatgttgt ttctgtacct atttgtgaaa aacctgctag       720
     taagctttgg ctctatctgt cacgcatcag aacagatgta actaacgagg caattgctga       780
     aatggtaaag gctaatctgg agctggaaac cgatcctgat gccgtaaagt tggtttccaa       840
     gggtgccgac gtaagcaaca tgtccttcat ctcgttcaag gtgccgctcc aaaatttcgg       900
     aagccttcca cgtcaactcc gattccatca ccaatagcmc tgtcacctgc tctagcgacc       960
     aactaatcgt tagccaccgc ttcactgtac atccctgtta ttccacaagc cttcattccg      1020
     aatcaggacg ttctgtagca catacaggtc aaaccgacga ttctttcgtt accgctagat      1080
     gttgccgtgt acacctagga cgcactgcca tcagccctaa gggagtcctc gagccacccg      1140
     accaagtcgt gcatgctgtc agttcctgcc aacgtagtcg tcctgggcct tcggtcgtgg      1200
     ttggtgacag gatctcccga caacctctgt caggcaagta cgcgtctggt tgtaacgtaa      1260
     acctgcctga aatttcatca atttccagcg tttctgtgga ttctcatgca atcgatagta      1320
     ggaaaatctg ggtatattac cagaacgttc gtggcttgcg aagcaaaatt gacgccttct      1380
     tccttgcggc tcgtgatagc aactttgaca taatagtctt gactgaaaca ggtctgaatg      1440
     atcgaatcaa ctctattcag ttattcggta cctcgtacaa tgtctatcgc tgcgatagaa      1500
     gtgatctcaa cagtgtcaag acgtgttttg gtggagtttt gatagctatt tcgaagcgtt      1560
     atactagtgc actggccgaa atctcccatg gtcgatatct tgagcaaatt tgcgtagcat      1620
     gcactgtgca aggaatgcaa ctattcattt gcgccattta catacccccc gataaaagca      1680
     gattggttga cgtaatggaa acacacgttg catctattcg ggaactatgc gatttacaac      1740
     aagacgatgg tgctgttctt gtgtgcggag actacaacca accccgatta aaatggctac      1800
     gacaggaaga ggaaaccgct gtttctgaat cccagattac tccctctagc tccgcactga      1860
     ttgatggaat gaatttctta aatatgcatc agtacaactc gattacgaat cagctcggtc      1920
     gtactctgga tcttgttttt gggtctgata atcttcgcct cacagttgat gaatcggtca      1980
     cacccttact ccgtgttgac aatcaccacc caccgcttgt tatttcaatt cctactgctg      2040
     aatgcactcc actacgaaac agtacctcta accaccgttc tcatatgctg aactatcgaa      2100
     ggattgattt cgatgcctta caatcatttc tcgaaggatt tgactgggat tctcggctga      2160
     ataatttgga aatcgacgat atgacaactg ttttttgcaa cgtaataact gaatggttag      2220
     atacgaatgt tccctcaaaa cgcaagcctg tctcacctgc gtggagcact ccgttactgc      2280
     gcgatttacg tcgtaaaaag aactcatgtc aacggaaact gcgttgcaat cgcaactatg      2340
     ccaacaaacg aaatttcaat atcgctagcc aagcctatcg caagcttaac tcgactcttt      2400
     atcgctcata tgtgcaacgc atccagttta gtttacgaag caatccaaga gagttctgga      2460
     agttcgttaa ttcgaaaagg aaaaatccta gcataccctc caacgtgtat cttgaccact      2520
     ccaacgcaaa tacgaacgcc tctgcttgtg agttgtttgc cacacacttt tcatccgttt      2580
     ttgctgattg tccttcaacg gaagatgagg ttggcgcttc aatttctgct gttccaatga      2640
     acatcgtcga cctggattca ttcagggtta ctcctgagat ggtaatctct gcaactaaaa      2700
     agctgaaaaa ctcgtttact cctggaccgg acaaaattcc tgccattgtc tacgtacgat      2760
     gctgcgatgc cattgcccag ccactgtgcc ggattttcaa caagtcattt gatcagcgag      2820
     tgttcccagg aatttggaaa caatctttta tgtttccagt acacaagaaa ggtgatcgtc      2880
     acgacgtaag gaattatcga ggaattacga gcttgtctgc agggtccaaa ctgttcgaga      2940
     ttattgttgg aaatttcctg attaaccaaa cgatgaacta catttcaact gatcagcacg      3000
     gtttcatgcc cgggagatcg gtaacgacta atctacttga gttcacaacc atctgtgcga      3060
     accaaatgga gagcaaggca caagttgatg ttatctacac agatctgaaa gccgcattcg      3120
     atcgaattga ccatgagata cttcttcgca aactcctgaa attaggtgcc tccgaaaggc      3180
     tagtttgttg gctgcgctcg tatctggttg gaagaacgct gcgtgtgcag ttcggtaatg      3240
     agctttcaaa tacgtttact aacaagtcgg gtgtgccaca gggaagtaat ctaggtccct      3300
     tactattctc tctgtatatc aatgatgctg cgttgctcct tggaccaaat tgtaaatcca      3360
     tatttgcgga tgatgcaaaa atctacgtct cagttcgaac aattgaggac tgtcatcact      3420
     tgcaagccct cttagatcga tttgtaaatt ggtgccgaag aaatcgattg acgataagca      3480
     tcacaaaatg ctctgcaatg actttccatc gaattgaacg ccctatcatc tttgactaca      3540
     aaatcgatgg tatactactg aacagagtag atcaagtatg cgaccttggt gttcaattgg      3600
     acactaagct gaccttcata ccccacatga cggaaatcat tgccaaggca aatcgccagc      3660
     ttgggtttat ttctaaaatt gcgcaaaact tcacggatcc ctactgtctt aagtcattgt      3720
     attgtgccct tgtccgccca attttagaga ctgcctcggt tgtttggact cctcaccaac      3780
     tcacttggaa cttgagaatt gagagggttc aaaaacggtt catacggttt gcgctgagaa      3840
     gtttaccatg gcgtgaccct gtaaacctac ctccctatcc agataggtgc caattactca      3900
     atctggacac gttggaacgt cggcgtaata ttgcacagat ttccactgca gctaaaatta      3960
     tcagtaacga actgaacact ccagggttgc tatcccgaat cgattttcgc gcctccagat      4020
     ggactcgcaa cacagctgtg atccaacatc gatttcatcg caccactttc ggttacaacg      4080
     agcctttttc tgcaatgtta aggacctttt caattgtgga agaggaatat gagttcggtg      4140
     aacctgctaa acgttttgtc aaccgtatta tgcgattacg actagtgtga ttctcacttt      4200
     ttgaatgtta atgataatgt attgttagtt atcttaattg ctccttttat tatcatttag      4260
     actaataagt ccgatgagtt acaataataa acaaataaac aaataaac                   4308
//
ID   CR1-83_AAe  repbase;    DNA;    INV; 4127 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-83_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4127
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1171-1171 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 21 sequences with >91%
CC   identity. Closely related to T1 and Q. This consensus is likely
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..434
FT                 /product="CR1-83_AAe_1p"
FT                 /translation="TEMKNELMETKALTKSLAAKISSNDVTSNQARVAWPS
FT                 IKRSREATSARETPRSRPKVKLVVGIKSVEKESMTVDTVAKPAEKFWIYLS
FT                 RIARHVTEADIAELVKKCLNTNAIDVRKLVRKDADLEQLAFISFKIGVDLK
FT                 LTTAQ"
FT   CDS           471..3998
FT                 /product="CR1-83_AAe_2p"
FT                 /translation="MMEASKPSDTVEPCRFISSTNCSGHPSRSVPVFGIGE
FT                 EVXQLAHSGKYNNNXVSSYTEYCSTSSTSVCNDGHPIPRSLSFVTSSTTEG
FT                 TSLSMMEASNSSDTVEPRRIVSSIADFVSSTELHHRSSTTERTSQSTMGAP
FT                 KPSDTVEQCRFPSPASCSGRPSRSVPVFGIGDGVSQPACSGKYNDIGAFSD
FT                 PESRPFCSNNVSPVSGYLPNLKSPSSLAIQPHGKPDNRLWAYYQNVRGLRT
FT                 KVDELFLAAADCGYDIIFLTETGLDESINSVQLFGTSFNVFRCDRNSSNSD
FT                 KASFGGVLIAVAQCYPSSLVTVEHGSNLEQVCVSTSIKGIRLSLAAVYIPP
FT                 DKSREVEIMEAHIASVKELTDKDGKVIVCGDYNQPRLQWIERDNKVYLAET
FT                 SSLNAASIALLDGMDFLNLNQCNTIKNELGRTLDLVFYNVESEAVIDEAAV
FT                 PLLPTDAHHPPLVLSLPSLLAPSSRSVDAQIRLFDYRKIDYASLIQFLSDR
FT                 NWNDIIESSNVDEMTVQFCNVVKHWLESNVPFKRRPFSPAWSTPSLRKLKR
FT                 KRNAAQRRLRRCKTVDAKREFKRTSTAYSTLNAALYKSHVLRAQWNLRRNP
FT                 RAFWSFVNSKRKNPSIPINIRLEDRVAACAAEASELFAEHFASVFETCEAS
FT                 DIEMESAACDLPSDVLNLSTFVVTEEMIITASRKLKNSFSPGPDGIPAVIF
FT                 RRCAVVLAKPLAAIFTRSFGLGIFPALWKQSFMFPVFKSGDRRDVKNYRGI
FT                 TSLSAASKLFEIILSDAVLNASKSYVSTDQHGFIPGRSVVSNLLEFTSTCI
FT                 TAMEQNTQVDVIYTDLKAAFDKIDHRILLCKLAKLGASETLTSWLHSYLTG
FT                 RTLRVQLDSRVSKPFTSSSGVPQGSNLGPLLFTLYFNDVAALLGAKVKLVY
FT                 ADDLKLYLIVRTVEDCRRLQCLLNLFVDWCRRNKLIVSIPKCVVMTFHRIK
FT                 DPILYNYYIDGNLLRRVDRVNDLGVLLDPKLDFRLHYSSIIAKANRQLGFI
FT                 SKIARDFKDPHCLKALYCSLVRPIIENASVVWCPYEVTWILRLEGVQKRFV
FT                 RLALRNLPWRDPVNLPPYPNRCLLLSLETLERRRKIQQATLVAKIINGEMD
FT                 CPELLSQLNFRIPQRTLRSYTLLQPRNHRTAYGYHEPLTAIIRVFTSMESA
FT                 FEFGEPSYKFRNRIRRM"
XX
SQ   Sequence 4127 BP; 1142 A; 903 C; 905 G; 1174 T; 3 other;
     tgacggaaat gaagaatgaa ctcatggaaa cgaaggctct aaccaaatca ttggcagcga        60
     aaataagttc aaacgatgtt acttccaatc aagctcgagt cgcatggcct agcatcaaac       120
     gatctcgtga agccacaagt gctagagaaa cacccagatc tcgaccaaaa gtaaaacttg       180
     ttgttggaat taaatcagtc gagaaagaaa gtatgactgt tgacacggtt gccaagccag       240
     cagaaaaatt ctggatatat ctttccagaa ttgcccgtca tgtaactgag gcagatatcg       300
     cggaattagt aaaaaaatgt ttgaatacca atgcaattga tgtgaggaaa ttggtgcgta       360
     aagatgctga tttggagcaa ttggcattca tttctttcaa aattggtgtc gacctgaagt       420
     tgactacwgc acaatgagat tcacctttaa cggaacgcac gtcactaagc atgatggaag       480
     cctccaagcc atccgacaca gtcgagccct gccgttttat ttcttctaca aactgttccg       540
     gccatccaag tcgttccgtt cctgtgttcg gaattggtga ggaggtcttm caacttgctc       600
     actcaggcaa gtataacaat aatasagtct cttcgtacac tgaatattgc tcaacttcca       660
     gcacaagcgt gtgcaacgat ggccatccga tccctcgctc actcagcttt gtaacatctt       720
     caactacgga aggcacgtca ctcagcatga tggaagcctc gaattcatcc gacacagtcg       780
     agccccgccg aattgtttct tctatcgccg acttcgtttc ttctactgaa ctacatcatc       840
     gctcatcgac aacggaacgc acatcacaaa gcacgatggg agcccccaag ccatccgaca       900
     cagtcgagca atgccggttt ccatctcctg caagttgttc cggccgtcca agtcgttccg       960
     ttcctgtgtt cggaatcggt gacggggtct cccaacctgc ttgctcaggc aagtacaatg      1020
     acataggagc tttctcggat cctgaatctc gtcctttttg tagcaacaac gtttcgccgg      1080
     tcagtggtta cctgccgaac cttaaatctc cgtcatcatt agccattcag ccccatggta      1140
     aacctgacaa ccgactttgg gcttactacc aaaatgtgcg aggacttcga actaaagttg      1200
     acgagttgtt tcttgctgct gctgattgcg ggtatgatat tatatttttg actgaaacgg      1260
     gtctagacga gagcatcaat tccgttcaac tattcggtac gagtttcaac gttttccgtt      1320
     gcgatcgcaa ctcaagcaat agcgataaag ctagttttgg tggagtgttg attgccgtcg      1380
     cgcaatgcta tcccagttct cttgtaactg tggaacatgg cagcaattta gaacaagtct      1440
     gtgtctcgac gagcataaag ggtatcaggc tcagtcttgc cgcggtatat ataccaccgg      1500
     ataaaagtcg agaagttgaa attatggagg cccatatcgc ttccgttaaa gaactgactg      1560
     ataaagatgg caaagtgata gtttgcggtg attataatca acctcgatta caatggatag      1620
     agagagataa taaggtctac cttgctgaaa catcatcact gaatgctgcc agtattgcgc      1680
     ttctagacgg gatggatttt cttaatctta atcagtgcaa tactatcaag aatgaacttg      1740
     gacgtacgct tgatttagta ttctataatg tagagagcga agctgtaatc gatgaagctg      1800
     cagtaccgct tttgccaacc gacgcccacc accctcctct ggttttatcg ctaccttcct      1860
     tgcttgctcc ttcttctcgc tcagtagatg cccaaattag actatttgat tatcggaaaa      1920
     tcgattacgc ttcgcttata cagtttcttt ctgatcggaa ctggaacgat atcattgagt      1980
     catcgaatgt tgatgaaatg acagtgcaat tttgtaatgt tgtaaaacat tggttggaat      2040
     caaatgtgcc attcaaaaga cgaccttttt cacctgcgtg gagtactccg tctcttcgga      2100
     aacttaaacg aaaacggaac gcagctcaac gaagattacg gagatgtaag acggtagatg      2160
     caaagcggga atttaagcgc acgagtaccg cctattcaac gttaaatgcg gcgctatata      2220
     aatcgcatgt tcttagggcc caatggaatt tgcgacgaaa tccacgtgcc ttttggagtt      2280
     ttgtaaactc taagcgcaaa aaccccagca ttccgatcaa tatacggctc gaagatcggg      2340
     tggctgcctg cgcagctgaa gcgagtgaat tatttgctga acactttgca tctgtgtttg      2400
     aaacgtgtga agctagcgat attgaaatgg agtctgccgc ttgtgatctt ccgtcagatg      2460
     tgttaaactt gtctacgttt gttgtaacag aagaaatgat tataacggcg tccagaaagt      2520
     tgaaaaattc attctctccc ggtccggatg gtattcctgc cgtgattttc cggcgttgcg      2580
     ctgttgtctt agccaaacct ctcgctgcta tcttcactcg atcttttggt ctgggcattt      2640
     ttccagcctt gtggaagcaa tcattcatgt tcccggtgtt caagtcaggc gatcgacgag      2700
     atgtgaaaaa ttatcgagga atcacaagtt tatctgctgc atcgaagtta ttcgagatca      2760
     ttctgagcga cgctgtattg aacgcctcta aaagttatgt ctccacagac cagcatggtt      2820
     ttattcctgg tagatcggtg gtatcaaact tgctggagtt cacaagtaca tgtatcacgg      2880
     caatggaaca gaacacccag gtcgatgtca tatacactga cttgaaagct gccttcgaca      2940
     agatcgatca taggatacta ctgtgtaaac tcgctaaact cggagcgtcg gaaacactca      3000
     catcttggct gcattcttac ctgacaggta gaacattacg cgtgcaattg gattcacgtg      3060
     tatctaagcc atttacaagt tcatctggtg tacctcaggg tagtaatttg ggaccgttac      3120
     tttttacgct atatttcaac gatgttgcgg cattactggg agctaaagtc aaacttgtat      3180
     atgctgatga tttaaaactc taccttatcg tccgtacggt agaagattgt cggcgtcttc      3240
     aatgtttact aaatttgttc gttgattggt gtcgtcggaa taaattgatc gttagtattc      3300
     caaaatgcgt ggtaatgaca ttccatcgta taaaggatcc aatactgtac aactactaca      3360
     tcgatggcaa tttgcttcgt agagttgata gagtaaatga ccttggagta ctcctggacc      3420
     cgaagctcga ttttcgtcta cattattcat caatcatcgc gaaggctaac agacagcttg      3480
     gctttatttc taagatagct cgagacttca aggatcctca ctgccttaag gcattgtact      3540
     gctcactggt taggcctata attgaaaatg cttctgtggt ctggtgtccg tacgaggtta      3600
     cctggatcct tcgccttgaa ggagtgcaga agagattcgt gaggctagcc ttacggaatc      3660
     ttccatggcg tgacccagta aacctaccgc cttacccgaa cagatgtttg ttgctaagct      3720
     tggaaacatt ggaacgaaga aggaaaattc aacaagcaac gttggttgca aagataataa      3780
     atggtgaaat ggattgcccg gaattattat cgcaattgaa ctttcgcatt ccgcaacgga      3840
     ctctaaggag ctacacgtta ctacagccaa ggaatcatcg tacggcatac ggctaccacg      3900
     aacctctaac ggcgattata agagtgttta cttcgatgga atcagcgttt gagtttggtg      3960
     agccctcata taagttccgc aatagaataa gaagaatgta atgtactgtt tttaatgtag      4020
     ttttgtgctg tagattgtct ttgttcatta gttttttttt atcaattaac cacattcatg      4080
     tagactgttg ttgtcagatg aattaaatca ataaaacaat ataaaaa                    4127
//
ID   CR1-84_AAe  repbase;    DNA;    INV; 4386 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-84_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4386
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1172-1172 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..586
FT                 /product="CR1-84_AAe_1p"
FT                 /translation="MVKANLALDANPEVVKLVAKEKDINTLSFVSFKIGLD
FT                 PSLKTKALNPNTWPEGLLFREFEDYAQKFRFPLKSRRPMTPLLHPPAVTPV
FT                 MDLS"
FT   CDS           604..4281
FT                 /product="CR1-84_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSKQPSSMQTSFANQPSPGCMPASCMEAPSPLITVEP
FT                 LLPATLSHPGPVYEVGGGVFQTPNAGKYSYVLNNSLPEFSDVCRHHLSYKD
FT                 NASLHSVGNIPLRSTQPGCMPASCMEAPSPLITVEPHLPATRSHPGSVYDV
FT                 GGGVFQTPNAGKYPYVLINSLPELSDLHRHHLRNRDNASHQSVENYQLHST
FT                 QPGCTPASLMEAPNPLPTVEPLLPATHSHPGPVCEVGGGVFQTPNAGEYSS
FT                 DMSNSLPEFFNIRSFSSCADSNSIHQSAMNRQLSQNRTLHSPDDVMIYYQN
FT                 VRGLRTKLDDFYTAVNSSSYDVLVLTETWLDDVIESRMLFDERYTTYRCDR
FT                 NSLTSNKKRSGGVLIAVLNKFPSSVIPVSDLSTEHVWISVKLSRYSLIIGG
FT                 IYLPPDVSNDHLVIRRHVACVEEISMSMKDGDNIIIFGDYNLPGLRWTRSN
FT                 RLYCTVDIPNSTLSRSCTIFLDGMYSNGIEQINDMKNHAGNTLDLVLLKDL
FT                 IDGKFDLEEAVDPIVPVDPAHPPLVLTIHGATGALISTADECDLSAFDFKR
FT                 ADFETLTHRLIGIDWSTVYRCPDIDGCVDKFTQILHHTFTECVPLLRPPSK
FT                 PPWSCRELRIRKKERNAAHRKYRTDRSSLNKATFKACSQRYKVLNNRLYRR
FT                 YAKKVERNMKRNPKQFWNFVNSKRKDNGLPSVMHMDDRMANTSDEKCFLFA
FT                 EFFESVFENSDTNVSNERALTHVPRDAIDANTFHITAEDLTKALCKLKLSY
FT                 QPGPDGVPACILKKCFTGLIVPLLHIYNMSMQQCRFPTLWKSSFMFPVHKK
FT                 NDKNNVRNYRGITSLCACSKLLEIVVSSYMFSRVKQYISVKQHGFFPGRSV
FT                 TTNLVEFSSLCVKNIGRGKQIDTVYTDLKAAFDRVSHSILLAKLEKLGVSV
FT                 QLVAWFKSYLCDRKLAVKIGSSVSSWFSNGSGVPQGSNLGPLLFSLFINDV
FT                 VLVLGEDFCILYADDMKIYKIIEHISDCYELQSLLDRLIEWCGANKMTLSV
FT                 PKCSIISFHRKKQPIMFRYAFGEEFLSRVDFIRDLGVILDTEFTFKYHYEE
FT                 IVKKARRQLGFMSKITKEFRDPYTLKSLYVGLVRPILESSSIVWDPYHATM
FT                 IDRIEAVQRKFLRFALRLLPWNDAVNLPPYEARCQLLQIEPLQLRRENAKA
FT                 VFISKVLTGELDAPNLLGSLDINVPAYTLRSNDFFRLPRRLHAYDSNEPIR
FT                 SMMNIFNQMYHNIDFI"
XX
SQ   Sequence 4386 BP; 1216 A; 1038 C; 913 G; 1219 T; 0 other;
     ccactggtct acgcttacta ctgcgatctc tgagcttcgg aatgagatca aacaaatcaa        60
     tgcgaaacca tcaccccaat tattgacgcc caataacaac gcttggccct cgatagattg       120
     gcgccgaccc agtaaacgat tgcgtaatca tgacaccgca acaagggcat ctgagacatg       180
     tcttgttgga agcaaatagc cgctagctga tgtcgtttcg gttccaatat gtgacaataa       240
     ccgtgatcaa aaattttggc tatatttgtc gaggattaga ccggacgtgg ctaacgatac       300
     agtttgtgcc atggttaagg ccaaccttgc acttgacgct aatccggaag ttgtgaagct       360
     ggttgccaaa gagaaagaca tcaacacact aagctttgtg tctttcaaga ttggtctaga       420
     cccatcactg aaaactaagg cattaaaccc aaatacttgg cctgagggtt tgttgttccg       480
     cgaattcgag gactacgctc aaaaatttcg gtttccgctg aaatccagaa gacctatgac       540
     tccgttactc catccacctg ccgtcacccc cgttatggat ctaagctaaa aattgaaatc       600
     atcatgtcaa aacaaccatc ttcgatgcaa acatcgttcg caaatcaacc ttcaccggga       660
     tgcatgcctg ccagttgtat ggaagcccca agtcccctca tcacagtcga gcctctcctg       720
     ccagcgaccc tcagtcatcc cggtcctgtg tatgaggttg gaggaggggt cttccaaacc       780
     cctaatgcag gcaagtactc atatgttttg aacaattctc ttcctgagtt ttccgacgtt       840
     tgcagacatc atttgagcta taaagacaac gcttcacttc attctgtggg aaatattcca       900
     ttacgttcaa ctcaaccggg atgcatgcct gccagttgta tggaagcccc aagtcccctc       960
     atcacggtcg agcctcacct gccagcgacc cgcagtcatc ccggttctgt gtatgatgta      1020
     ggaggagggg tcttccaaac cccaaatgca ggcaagtatc catacgtttt gatcaattcg      1080
     ctgcctgagt tatctgatct tcacagacat catttgagaa atagagacaa cgcttcacat      1140
     caatcagtgg aaaattatca attacattca actcaaccgg gatgcacgcc tgccagcctt      1200
     atggaagccc cgaatcccct ccccacagtc gagcctctcc tgccagcgac ccacagtcat      1260
     cccggtcctg tgtgtgaggt tggaggaggg gtcttccaaa caccgaatgc aggcgagtat      1320
     tcatctgaca tgagcaattc gcttcctgaa tttttcaaca ttcgtagttt ttcatcgtgt      1380
     gccgatagta actctataca tcagtcagca atgaacagac aactcagtca aaaccgaacc      1440
     ctgcattccc ccgacgacgt gatgatatat taccaaaatg ttcgagggct gagaacaaaa      1500
     ctggatgact tctacaccgc cgtgaacagc tcttcgtacg atgtccttgt actcactgaa      1560
     acgtggctag acgatgttat cgaatctcgg atgctattcg acgaaaggta tacgacgtat      1620
     cgttgcgacc gaaattcatt aacgagtaac aaaaaacgat ccggtggagt gctaattgct      1680
     gtgctcaaca aattcccttc gtcagtaatc ccagtgtcag acctgtctac agagcatgtt      1740
     tggatctccg ttaagctcag tcgatatagt ctaattatcg gcgggatcta tctaccaccg      1800
     gatgtgtcaa atgatcattt ggtgattcgc cgtcatgttg cctgtgtaga ggagatttcg      1860
     atgtcgatga aagacggtga caacatcatt atctttggag actacaactt acctggttta      1920
     cggtggacac ggtcgaatag gctttattgt actgttgaca tacccaactc gacactttca      1980
     cgatcatgca cgattttttt ggacggaatg tattccaacg gtattgagca aattaacgat      2040
     atgaaaaatc atgcaggtaa tacgctcgat ctcgttcttc taaaggattt aatcgatggg      2100
     aagtttgatc tggaggaagc tgtcgatcct attgttccgg ttgacccggc tcatccacct      2160
     cttgttctca ccattcacgg cgcaaccggg gctcttatta gtacagcgga tgaatgtgac      2220
     ctctccgcgt ttgattttaa aagagccgac tttgagacat tgacacatcg gctgatagga      2280
     atcgattggt ccactgtata ccgttgtcct gacatcgatg gttgtgttga caaattcacg      2340
     cagattcttc atcacacttt cacggagtgt gtgcctttgc tacgcccccc ttcgaagcca      2400
     ccatggtctt gtcgtgaact tcggatacgt aaaaaggaac ggaatgctgc tcatcgaaaa      2460
     taccgcactg atcgatcatc gttaaacaag gccactttta aagcttgcag ccagagatac      2520
     aaggttctga acaaccgtct ttatcgacgt tatgctaaaa aagtcgaacg caacatgaaa      2580
     cgtaacccta agcagttttg gaactttgtg aattccaaac ggaaggataa tggtttgccc      2640
     tcagttatgc atatggatga ccgcatggct aacacttctg acgaaaaatg cttcttgttt      2700
     gctgagttct tcgaatcagt ttttgaaaac tcggacacta atgtgagtaa tgaacgtgcc      2760
     ctaacgcacg taccgagaga tgccatagac gctaacactt tccacattac tgcggaggat      2820
     ctcaccaaag cgttatgcaa gctcaagctt tcctatcagc ctggtcctga tggagttcct      2880
     gcctgcatcc tgaagaaatg tttcacggga ctaattgtac ctcttctgca catctacaac      2940
     atgtcaatgc agcaatgtcg ttttccaaca ctgtggaagt catcgttcat gtttccggtg      3000
     cacaaaaaga atgacaaaaa taatgtccga aactaccgag gaatcacttc tttatgtgct      3060
     tgctcaaaac tgttggaaat agtagtgtcc agctacatgt tttctcgtgt aaagcagtac      3120
     atcagtgtga aacagcatgg ctttttcccg ggacgaagtg ttactactaa cttagtggaa      3180
     ttttcgtcac tttgtgtgaa aaatatcgga cgtggcaaac agatagacac tgtttacact      3240
     gatttgaaag cagctttcga tcgtgttagc cattcgattt tactggcaaa gctagagaag      3300
     cttggtgttt ctgttcagct cgtagcttgg ttcaaatcat acctgtgtga caggaaactc      3360
     gcggtcaaaa ttggctcatc tgtctccagc tggttctcga acggttcagg tgtacctcaa      3420
     gggagtaacc ttggcccatt attgttttcc cttttcatca atgatgtcgt cttagttctc      3480
     ggtgaagact tctgcatact ttacgccgat gatatgaaga tttacaagat tattgagcac      3540
     atttctgact gttacgagtt acaatcgctt cttgaccggc ttattgagtg gtgtggggca      3600
     aacaaaatga cactcagtgt tcctaaatgc tctatcatta gtttccatcg taagaaacaa      3660
     ccgatcatgt tcaggtatgc gttcggtgaa gaatttcttt cacgagttga ctttatacgt      3720
     gacctgggcg ttattcttga caccgaattc acctttaagt atcattacga ggaaatcgtg      3780
     aaaaaagctc gtcgtcaact aggatttatg tccaaaataa cgaaggaatt tcgcgaccca      3840
     tacactctta aatcattgta tgtaggtctg gtccgtccta tactggaatc atcctctatt      3900
     gtttgggatc cctatcatgc aacaatgatt gaccgaattg aagctgtgca gcgcaaattc      3960
     ttaagatttg ctttacggtt gctcccttgg aatgatgctg tgaacctgcc tccgtacgaa      4020
     gctagatgcc agcttctgca aatcgaacca ttacaactac gcagagaaaa tgccaaggct      4080
     gtgttcatct cgaaggtcct gactggggaa cttgatgctc ctaacttact gggatcgtta      4140
     gatataaacg tgccagcata tacgctccgc tccaatgatt tctttcgctt accacgacga      4200
     ctccacgcct acgattcgaa cgagccaatt cgatcaatga tgaacatttt caatcaaatg      4260
     tatcataaca tagattttat ttaataatga cgtttatact ctaactatag attcattaag      4320
     acacacaata ttgtcagatg aatacaccac caaataaata aataaataaa taaataaata      4380
     aataaa                                                                 4386
//
ID   CR1-85_AAe  repbase;    DNA;    INV; 3646 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-85_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3646
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1173-1173 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..636
FT                 /product="CR1-85_AAe_1p"
FT                 /translation="DRRSKGVSTNRLSPAVLSPVPNRFQFNRPSLKRSRER
FT                 DEVAVXPSDRPSKVFRGTNQCTNASVRSADIPXDKFWVYLTKISPEATEDD
FT                 ILNLARSCLQTEDIVAKALVPKGRPLSSLTFVSFKVGVNQDLKSRAMDPST
FT                 WPSEIQFREFIDTSSSAXHFWTPRPRFDPGTLNIQEQQVTIAPTPNLNLQ"
FT   CDS           450..3584
FT                 /product="CR1-85_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PGSEVKGNGPIHLAIRNSVSRVHRYQFKCPAFLDAEA
FT                 EIRSRYVEHPRAAGNHCTNTESEFAIASLDEQLSFPSTSISMPHRIPEPSR
FT                 ASTRSKSKPLTIYYQNVRGLRTKTNNLLLSLSACDFDIVVFTETWLHADIA
FT                 SSELSCNYVIYRCDRNASTSCLQRGGGVLIAIKSELNCRAVHLVDSDDLEQ
FT                 TAVRITLPLFSLFVCCIYIRPNSCPEKYKRHVDSVNQISTQAGPRDVIVCL
FT                 GDYNLPNLVWHFDEEILAYLPINASTEQELALAEAMMSAGFYQVNDLLNVN
FT                 GKLLDLVFVSDQSIIDLFESPYALLKVDAHHKPFILTVDACSRDEDSSATF
FT                 TSNFDYDFNNCDYEELNARIASIDWQIVLNHVSIDDAVSAFYSTIHHVIQS
FT                 TVPVRPRRNSKQFSQPWWTPQLRNLRNRLRKIRKRFLRHRNASNMRELKHA
FT                 EEEYNLQQRNRFREYTDSLQENFRQNPSSFWSYINKRKSSSRVPVDVNYRS
FT                 RVSCSPVATANLFADFFRSVHNDATPQLSQQYLDSLPAYNFRVPQVAFSNV
FT                 EILEALSTLDASKGPGPDMLPPVFIKQCAHSLSLPVTSIFNRSLIEGVFPD
FT                 AWKLASITPIHKGGNMNNVENYRPISILNCLAKVFESLIHGILYPVVQHAI
FT                 SEYQHGFVRKRSTTTNLMSYTHSIINHLEKRNQVDAIYIDFAKAFDKVPHE
FT                 LAIEKLSRLGLPFWVIQWLKSYLSSRKAFVKVHDARSNVFDIPSGVPQGSH
FT                 LGPLIFILYINDLCETLNSSKLLYADDLKLFRVIKSLLDCCALQADIRTVS
FT                 RWCEVNGMQMNVSKCKVITFTRRQSIISFDYSLDNTSLEKVRTIKDLGVTL
FT                 DSKLRFNEHISVTTAKANAMLGFLRRNTSQFDNVYALKSLYCALVRSILEY
FT                 GVQIWAPYHAVHIERIERVQKRFLRFALRGLPWNDPVNLPPYENRCALIGL
FT                 QPLASRRVMLQRLFTFDVIRNNIDCSSLLENVRLHVPIRQLRNRQLLWIPG
FT                 HSTLYGLNNPFDICCRLFNQVCNVFDFNISKLIYKNRIK"
XX
SQ   Sequence 3646 BP; 986 A; 870 C; 765 G; 1021 T; 4 other;
     acgacgctta ccagaaactg gttgatgatc tgaagtccga gatcaaggag agtttgatca        60
     tcgaattgag acaggagatc caagggggtt tcaacaaaca gactatctcc agctgtactt       120
     tctcctgtac ccaatcgatt tcaattcaat cgtccatctc tgaagagatc acgcgagcga       180
     gatgaggttg ctgttttkcc gtccgatcgt ccttcaaaag tttttcgagg tactaatcag       240
     tgtacgaatg cctctgtgcg atctgctgac atcccgwtgg acaaattctg ggtttatttg       300
     actaaaatct ctcccgaggc cactgaagac gacatcctca accttgcaag gagttgtttg       360
     caaacggaag atatagtagc caaagcactg gttccaaaag ggcgcccgtt atcctcgttg       420
     acgtttgtgt cgttcaaagt gggagttaac caggatctga agtcaagggc aatggaccca       480
     tccacctggc catcagaaat tcagtttcgc gagttcatcg ataccagttc aagtgcccwg       540
     catttttgga cgccgaggcc gagattcgat cccggtacgt tgaacatcca agagcagcag       600
     gtaaccattg caccaacacc gaatctgaat ttgcaatagc ctcactagat gaacaacttt       660
     catttccgtc aacgagcata tccatgcctc atcggattcc tgagccctct cgtgcttcta       720
     ctcgctcaaa atctaagcca ttgacgatat attatcagaa cgttcgtggc ttaagaacta       780
     aaacgaataa tctgcttctc tccttgtcgg cctgtgattt cgatatcgtt gttttcacag       840
     aaacatggct tcacgctgat atagcttctt ccgaattatc ctgcaactat gtcatttacc       900
     gttgcgatcg caatgcttcc accagctgtc tacaaagagg aggtggcgtg ctaattgcaa       960
     ttaaatcgga gctaaactgc agagccgtgc atctagttga cagtgatgat ctagagcaaa      1020
     ctgccgttcg gatcacctta ccactgttct ccttgtttgt ttgctgcatt tacattcgcc      1080
     ccaatagttg cccagagaag tacaagaggc acgtcgactc agtcaaccag atttcgactc      1140
     aagctggccc ccgcgacgtt atagtttgct taggagacta taatttgcca aatttagtct      1200
     ggcatttcga cgaggagata ttggcatacc tgccgataaa tgcgtcaact gaacaagaac      1260
     ttgctctsgc tgaagcaatg atgtccgccg gcttctatca agtgaacgat cttcttaacg      1320
     tgaacggtaa gctacttgac ttggtatttg taagtgatca aagcatcatt gatctcttcg      1380
     agtcaccata tgctttgcta aaagttgacg ctcaccataa gccgtttatt ttaaccgtgg      1440
     acgcctgttc tcgcgacgaa gattcatcag caactttcac gtcaaatttc gactacgact      1500
     tcaataactg tgactatgaa gagctcaatg cacgaatcgc ctccattgat tggcaaattg      1560
     ttttgaacca tgtttccatc gatgatgctg tttccgcatt ctacagtact atccatcatg      1620
     tcattcaatc gacagttccc gtgaggcctc gtcgaaattc taagcagttc agccaaccat      1680
     ggtggacacc gcagcttcgc aacctgcgaa accgcttacg taaaataaga aaacgtttcc      1740
     ttcgccaccg gaatgcttcg aacatgaggg agttgaagca tgctgaagag gagtacaatc      1800
     tgcagcaacg taatcgtttc cgtgagtata ccgacagcct acaggagaat ttcaggcaaa      1860
     acccttcgtc attttggtcc tacatcaaca aacgtaaaag ttcgagtaga gttcctgttg      1920
     atgttaacta tcgctctcgt gtttcctgtt ctccagtcgc aactgcaaat ctatttgctg      1980
     atttctttcg ttccgtgcat aatgatgcca cacctcagtt atcgcagcaa tacttagaca      2040
     gtcttccggc atacaacttt cgcgttccgc aagtagcatt tagtaatgtt gaaattcttg      2100
     aagcgctcag tacactagac gcatcgaagg gtccgggtcc ggatatgctt ccacccgtct      2160
     ttattaagca atgcgcccat tcgctctctt tgcctgttac gtcgattttc aatcgctcgt      2220
     tgattgaagg agtttttcct gatgcttgga agctcgcctc aattacccca atacataaag      2280
     ggggaaatat gaacaacgtg gagaactaca gaccgatttc cattctaaat tgccttgcga      2340
     aagtttttga aagcttaata cacggcatat tgtaccccgt agtacagcac gcgatatccg      2400
     aatatcaaca cggctttgtc agaaaacgat caacgacgac aaatcttatg tcatatactc      2460
     attctataat caaccatctg gagaaacgca atcaggtcga tgccatttac attgactttg      2520
     ctaaagcatt cgacaaagtg ccgcatgaac tagctattga aaagctgagc cggcttggtt      2580
     tgccattttg ggtgattcaa tggctgaagt cctatctctc atcgagaaaa gctttcgtca      2640
     aagtgcacga cgcaagatca aatgtttttg atatcccctc tggagttcca cagggcagcc      2700
     atcttgggcc actcattttc atcctgtata tcaacgatct gtgtgagacc ctcaactcaa      2760
     gcaaactact gtacgccgat gacttgaagc tgttccgtgt catcaaatcg cttttggatt      2820
     gctgcgcttt gcaagccgat attagaaccg tatctcgttg gtgtgaagta aatggaatgc      2880
     agatgaatgt ttcgaagtgt aaggtgatta cattcacccg ccgtcagtct attatctcgt      2940
     tcgattactc tctagataac acgtcgcttg aaaaggttcg aacgatcaag gaccttggag      3000
     taacccttga tagcaagctt cgatttaacg aacacatctc ggtgacaaca gctaaagcca      3060
     acgcgatgct cggtttcctg cgccggaaca catcgcagtt cgataacgtg tatgctctca      3120
     aatcactgta ctgtgcttta gttcgaagca tactcgaata cggagtccag atatgggcac      3180
     cgtaccacgc cgtgcatatt gaacgcatcg aaagagttca aaaacgcttc ctaaggtttg      3240
     cattgcgtgg gctcccttgg aatgatccgg tcaatttacc gccctacgaa aatcggtgtg      3300
     cactaatcgg tctgcagccg ttagcgagtc gtcgagtgat gcttcaacgc ctgtttacct      3360
     tcgacgttat cagaaataac attgactgta gcagccttct ggagaatgtc agactacacg      3420
     tgcccattcg tcagcttcga aaccgccaac tgttgtggat tcctggccat agcactcttt      3480
     acggactgaa taatcctttt gatatatgtt gtcgactgtt taatcaagtg tgtaatgtgt      3540
     tcgactttaa tattagtaaa ttaatttata agaataggat taagtgaatt ttaacagtct      3600
     gtgcaacttc caagttgaag atgaagcaaa taaataaata aataaa                     3646
//
ID   CR1-86_AAe  repbase;    DNA;    INV; 4990 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-86_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4990
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1174-1174 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 19 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1284
FT                 /product="CR1-86_AAe_1p"
FT                 /translation="MNCGRCQKNVIDAERIMCRGFCGATFHTICVEVDMPL
FT                 LEQLRPHERNVFWMCDKCAELFSNGHFRNLTNRCDATNADLRDTINDMKAD
FT                 IAKLNTAIGTLARRSEVIPSSPLLSPANPWRLAVRNKSLVNSAKRQRGNDG
FT                 LTVTSDQKPESIKGTRVSNGSIQTVKRNAEQLVWVYLSAFHPHTTVDQIAA
FT                 LARECVGLSDKDDIKVTKLVSKNADTSNMSFVSFKVGFEAQHKPTALSPDT
FT                 WPDDISFREFVNYGQKNMPNIVKLAGSIINESPLDHSNSEGTPPITGNMTS
FT                 CADVNHATSFPVDSNP"
FT   CDS           1236..4826
FT                 /product="CR1-86_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MCGCQSCYQFSSGFEPIISSCFPVSDLTSKHSVPVSQ
FT                 VPLNVXEISLPTTNNYPTMPPSPSSFFDISEYHQPERTACRIEEVPEPLDP
FT                 VASAVSRLHSRSGPVVEFGDGIFRPLSSGKYKLSQNNTRPDKISLSSSTSL
FT                 RPRLLDELQVLKPDIVATLQPERTARSTEEALVPLDSVAIAGSSHLSRSGP
FT                 VVELGDEGFHTSTPGKSLLVNHSSSNDARQCFSKQATTGNTSTMNELRIYY
FT                 QNVRGLRTKIDDFFLAVSENEYDVIILTETWLDNVIFSSQLFGNQYSVYRT
FT                 DRNATNSVKSRGGGVLIAVSSKYSSYRDPATVCNSLEQLWVRIDMRSHNIS
FT                 VGVIYLPPDRKDNLNDIQHHIDSIGSVISLLGPNDLALQFGDYNQSAISWT
FT                 ATEPPSVDMDHSRLSVASCALLDGFDLHGMTQINTIKNSRGRLLDLILAND
FT                 FALPSCVLRTPVEALLAIDENHPPLEVGICHTMPLTFESSFDGTRYDFGKA
FT                 NYSELNSALQALDWNFLNLTADVDEAVEYFTNAVNTIIASHVPLARPPPKP
FT                 IWSNSRLRSLRRRRSAALRKYCNNRSQYFKQQLNIASREYRTYNKLLYARY
FT                 VSRIQRNLRSNPKQFWAFVKTKRNENGLPTSMHLGSQQANSAAEKCELFAA
FT                 QFKTAFISSSTPSSQVELAVCDTPHDVLDLNTIQIDEDVVLQAIRKLKSSN
FT                 SAGPDGIPPVILKRCSSALAEPLTKIFRLSLQRQRFPLNWKKSLLFPVYKK
FT                 GDKRDISNYRGITSLSACSKVFEIIVNEALFICCRQYISCDQHGFFPKRSV
FT                 TTNLTNFTSACIQAMDAGKQVDAVYLDLKAAFDRVDHPILLKKLEKLGVAX
FT                 NFVEWFRSYLTGRSLRVKIGSSLSVPFNNESGVPQGSNLGPLLFSLFINDV
FT                 SLILPPGVRLFYADDAKIYIVVGCIDDCVELQTLLCRFERWCSNNSLTLSI
FT                 EKCQVITFSRKRKPITFQYSLCGQSLERVNQVRDLGVLLDQGLTFRHHYND
FT                 IITRANRQLGFIMKVTNEFQDPLCLKSLYCSLVRSIIEFAVVVWCPYHGTW
FT                 KARMETVQKRFVRFALRNLPWRDDQHVTPYFDRCQLLGIETLETRRQTMQA
FT                 MFIAKILNGDIDSPSLLTQVNVNAPERVLRRRHFLRLDGRNSRYGQHDPIR
FT                 FASNTFNGVAHLFDFDVPLASIQQRFTTCIRNMSRNNP"
XX
SQ   Sequence 4990 BP; 1356 A; 1176 C; 1037 G; 1419 T; 2 other;
     tactttacat tgcgaaattg tcgtggtttt cgacttgttt ttctggtgtt atctttgcaa        60
     taataatact gatcaatcgt tttttatgtt ttgtggagtt gaccgtttta tgaacagttg       120
     aaattagttg ttattacatg ttaaattcag tgtttttggt tatcgaaagt gtgctcccgt       180
     atcgttttgt ggaagataac attgtgtcat acccacacgt cattttttgt tctcaaagcg       240
     ccatctgtta ttgactagtg aaaacacgct tcgtttcata ggagtgttca tatacgtggc       300
     ttactccaca gacaactaga caactttcgt ccgtgagagt ggtatttcac caattttact       360
     atgaattgtg gtcgctgcca gaagaatgtc atcgatgccg agcgtatcat gtgcagaggc       420
     ttttgcggtg caacgtttca tacgatttgc gtcgaagtcg atatgccgct cttggagcaa       480
     cttcgaccac acgagagaaa cgttttttgg atgtgtgata aatgcgctga gttattctcc       540
     aacggtcatt ttcgaaactt gactaatcgc tgtgatgcta cgaatgcgga tttgcgcgat       600
     acgattaatg acatgaaagc cgatatcgcc aaacttaaca cggctattgg aacactagca       660
     agacgcagcg aagtaattcc atcttcccca ctgctttccc ctgccaatcc atggagactc       720
     gcagtacgta acaagagctt ggtgaattca gcaaaacgtc aacgaggaaa tgatggactc       780
     acagttactt ccgaccagaa acctgaaagt attaagggaa ccagagtctc gaatggctca       840
     attcaaacgg taaaaaggaa cgccgaacaa cttgtctggg tctacctgtc tgcctttcat       900
     ccgcatacta ccgttgacca aatcgctgca ctcgctcgcg aatgtgtcgg attgagcgat       960
     aaagatgata ttaaagttac caagctcgta tctaagaacg cagatactag caacatgagc      1020
     ttcgtatcat tcaaagttgg attcgaagca caacacaagc caactgcgtt atcacccgat      1080
     acttggcccg atgatatttc tttcagagaa tttgttaact acggtcagaa aaacatgccg      1140
     aacatcgtga aattggcagg tagcatcatc aacgaatccc ctttggatca ttcgaactcc      1200
     gagggtactc caccaataac gggaaacatg acttcatgtg cggatgtcaa tcatgctacc      1260
     agttttccag tggattcgaa cccataatct catcatgctt ccctgtttct gatttgactt      1320
     cgaaacactc ggtccccgtt agtcaagtcc cactcaacgt agawgaaatt tcattgccaa      1380
     cgactaacaa ctaccctaca atgcctccat ctccatcaag tttcttcgac atctccgaat      1440
     atcatcaacc agaacgcact gcctgtcgta ttgaggaagt ccctgagcca ctcgacccag      1500
     tcgcgtctgc cgtttcccgc cttcacagtc gttctggccc tgtggtcgag tttggtgacg      1560
     ggatcttccg cccactctca tcaggcaagt acaaactttc gcagaacaat actcgtcctg      1620
     ataagatatc actttccagc tcaacaagct tacgccctcg tttactcgac gagctacaag      1680
     ttctgaagcc tgatatcgtt gcaactcttc aaccagaacg cacagcccgc agcactgagg      1740
     aagccctcgt gccgctcgac tcagtcgcga tcgcaggctc cagtcatctc agtcgttctg      1800
     gtcctgttgt cgagttaggt gacgagggct tccacacttc aactccaggc aagtctctac      1860
     tcgttaatca cagttcatcc aatgatgctc ggcaatgttt cagcaaacag gcaacgactg      1920
     gaaatacctc cacgatgaat gaactgagga tatactacca aaatgttcgc ggtctgcgaa      1980
     ctaaaatcga cgatttcttc ttagctgtta gtgaaaacga atacgacgtg attatcctga      2040
     ctgaaacttg gctggacaac gtcattttct cttcgcaact tttcggaaac caatattcag      2100
     tatatagaac cgaccgcaac gccacgaata gtgtcaaatc caggggtggt ggagtactta      2160
     ttgccgtctc atcgaaatac agcagctacc gtgatcctgc tacagtatgc aattctcttg      2220
     agcagttgtg ggtacgtatc gacatgcgaa gtcataatat cagcgttgga gttatttatt      2280
     tgcctcctga ccgtaaagac aatctcaacg acattcagca tcacatagac tctatagggt      2340
     cggtaatatc tctgcttgga cccaatgatc tcgccttgca attcggagat tataatcaat      2400
     cagcaatttc gtggaccgcc accgagcctc catctgtgga catggatcat tcacgcttat      2460
     cagttgctag ctgtgcacta ttggatggct ttgatcttca cggaatgacg caaattaata      2520
     caatcaaaaa ctcgaggggg cgtcttctcg atctcatact tgcgaatgat tttgctttac      2580
     ctagctgtgt tttgagaact cccgtagaag cactcttagc tatcgacgaa aaccatccac      2640
     cgctcgaagt tggaatttgc catacaatgc cacttacgtt cgaaagctct tttgatggca      2700
     ccagatatga ttttggtaaa gctaactatt ctgagctgaa ttctgcgtta caggcgttag      2760
     attggaactt tcttaatctg actgccgacg ttgatgaggc agttgagtat ttcactaatg      2820
     ccgtcaacac aatcattgca tcgcatgttc ctttggctag acctccacca aagccaattt      2880
     ggtcaaacag tagattacgt tcactaaggc gccgccgttc tgcagccctt cgcaagtatt      2940
     gtaacaaccg atcgcagtat tttaagcagc agttgaatat tgctagtaga gagtatcgta      3000
     cttacaacaa actcctgtat gctcgttatg tcagccgtat ccaacgcaac ctacgctcaa      3060
     atcccaaaca attctgggca ttcgtcaaaa cgaagcggaa cgaaaatggt cttcctactt      3120
     caatgcacct agggtcccaa caggcaaact cagctgcaga gaagtgcgaa ttgtttgcag      3180
     cacaattcaa aacggccttc attagttcct ccacaccttc ctcccaagtt gagttagctg      3240
     tatgtgacac tccacatgat gtgctggact tgaacactat ccagatcgac gaggatgttg      3300
     ttttgcaagc gataagaaaa ctgaaatctt caaactctgc cgggcccgat ggtatccctc      3360
     cagttatact aaagcgctgc tcatctgcac tagcagaacc gctgactaag atattcagat      3420
     tgtctctcca acgtcaacgt tttccgctaa attggaagaa atcgctcctg tttcctgtat      3480
     acaaaaaagg ggacaaacgt gacatcagta actaccgagg aattacatca ctctctgcgt      3540
     gctcaaaagt tttcgaaatt atagtgaacg aagcactctt catctgttgc cgtcagtaca      3600
     tttcttgcga ccaacatgga ttttttccaa aacggtccgt tactacgaat ttaaccaatt      3660
     tcacgtcagc gtgcatacaa gcaatggatg caggaaaaca ggtagatgct gtttatcttg      3720
     atctgaaggc cgcttttgac cgtgtggacc atcccatact gctgaagaaa ttggagaaac      3780
     ttggtgttgc tmtgaacttt gtagagtggt tcaggtcgta tctcaccggc agatctctac      3840
     gtgtgaaaat tgggtcatca ctctctgtgc ccttcaataa tgagtccggg gttccacaag      3900
     gtagtaacct cggacccctg ctgttttcgt tgtttattaa cgatgtttcg ctcattttac      3960
     cacctggagt aagacttttt tatgctgatg atgccaaaat atacattgtt gtaggctgca      4020
     tcgacgactg cgtagaactt caaactcttt tgtgccgatt cgagagatgg tgctcaaata      4080
     acagccttac gcttagtatc gaaaaatgtc aagtcatcac attcagcaga aagcgcaaac      4140
     ctattacatt ccaatactcg ttgtgtggcc agtctctgga gcgagtgaat caagttcgcg      4200
     atctaggtgt tctactggat caaggcctca ccttccgtca tcattataac gacattataa      4260
     cgagagcgaa taggcagctt ggatttataa tgaaagttac caacgaattt caagaccctc      4320
     tgtgcctaaa gtcgctgtac tgctcactgg tgcgttcaat tattgaattt gcagtcgtcg      4380
     tttggtgccc ctatcatggt acttggaaag cccgtatgga aactgtgcaa aaaaggttcg      4440
     tgcgcttcgc tctgaggaat ctgccttggc gtgatgatca acatgtgact ccatacttcg      4500
     atcgctgcca gttactaggg atcgaaactc tagagaccag acgacaaacg atgcaggcaa      4560
     tgtttattgc gaagattctc aacggtgata tagattctcc atcgcttttg acccaggtaa      4620
     acgttaacgc tccagaaaga gtattgcgta ggcgacattt cttgagattg gatggccgga      4680
     atagtcgcta tggacagcat gatcctattc ggtttgcatc caatacattc aatggtgtcg      4740
     ctcatttgtt cgatttcgat gtgccattgg cctctattca gcaacgtttc acgacatgta      4800
     ttcgaaacat gagtcgaaat aatccatagt ttagggttac tatactaatt tgacaacttt      4860
     ttagattcta gtgctgagtt agttaagtaa ttgtgactgt cgttattgta accgagtttt      4920
     attttctttc ttcattaaga cactcagtca gatggaggta aactgtaata aacaataaac      4980
     aataaacaat                                                             4990
//
ID   CR1-87_AAe  repbase;    DNA;    INV; 4457 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-87_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4457
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1175-1175 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           142..1074
FT                 /product="CR1-87_AAe_1p"
FT                 /translation="MLATRAVIVTTPDPEEGGTLRSGKRRKIANSETDRSS
FT                 ASRLPSKNPPCSITPQPKTKTVIKMEQTVSFKPKQAQSAESTKADLCSKLD
FT                 PVTFSVTNVHMKVTGEVTVRCETKDHAEKLSKTASEMFADKYVVEIQRPLK
FT                 PRVKVIGFSKEVSEEEFLPKLMKQNRGLECFSMKVVRIIKNETRSSNQVSA
FT                 ILETDARGFEELIDRQRLYIGWERCRVIEATDVLRCFNCSEYGHKAVSCTK
FT                 TACCPKCAGDHQVSECQSDFAKCINCHLMNTNRTSPYDKLLDVSHSSWSLD
FT                 CPIFAKRLNTARQRIDFSA"
FT   CDS           1078..4377
FT                 /product="CR1-87_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QLDETAQLYASRLNPSSMDATNSLQRENLAGPGNYKN
FT                 SICPVEARKDSTLVVSNLQLFQSSLISLPTLAPEDVGHPDVLLLPGYYPTA
FT                 MDLICDAQPNELGGPGNAMNSICPSEAPRDTAPALRGSQNFQNRTCYSSEE
FT                 ENNNNFSIYYQNVRGLRTKIDDFYIMTQNGDYDVIVLTETWLNNEINSTQL
FT                 FGSEYTVYRKDRDPNISGKLRGGGVLVAVRRGFSSSCNYVGIDDDLEHIFV
FT                 NIDGGVRTVCVGVVYIPPDQSRNSDVIERHIRSISSVSYSLKLHDLHLLFG
FT                 DFNLPDVSWNFASTGYAYPEASESISSSLNFLDGMSLLNMKQLNVTRNCLN
FT                 RILDLFFVNDEALPMCTLMEPHEALVPVDPMHPPLLTSLQCTAPIKFSDQD
FT                 VVRMFDFAKTDFISLNEAMREIDWSTLSLATDVNVAVSIFNHTLLQLLPXF
FT                 VPASRPRQSPRWANNHLRHLKRKRSKALRKFSSNRCAVNKRRFNEASRRYK
FT                 KYSRELYSRYVNRTQSDLKNHPKRFWSFVNEKRKETGLPSTMFLGDEFADT
FT                 TMDICNLFAKHFSSAFDDGTTTAQQIENALLDVPTDIININIDRFDEADIL
FT                 AGIAKLKPSSAPGPDGIPSIIFKKCADTLSGPLKTLFDLSIAQSVFPTDWK
FT                 RSIMFPAFKKGDKRNVTNYRGVTSLSAGSKLFEILVNDRIFRAVKSYISQD
FT                 QHGFFAGRSTTTNLLQFSSFCINTIEKGSQIDTIYTDLKSAFDKVNHDILL
FT                 AKLERLGMARRLVDWLRSYLANRQLRVKLGSTESDAFNSSTGVPQGSNLGP
FT                 VLFIIFFNDVCLTLPSGCKLVYADDLKLYLTIESYRDCQKLQKLLDVFVDW
FT                 CRRNHLTVSIGKCSVISFTRKKHPINWTYYIDNHPLDRTNAVKDLGVLLDT
FT                 ALNFKDHYSQIISKANRNLGFIFRISNEFRDPYCLRSLYYSLVRSVLESSA
FT                 VVWCPYHNVWIERIEKVQSKFIKYALRFLPWRNRDQLPPYEDRCRLLGMDT
FT                 LERRRKISQGHFVAKILLGEIDASRILAQVNINTGQRILRQRSFLRLPYHR
FT                 TEYGQHDPIRTMCEAFNNFFTMFDFNISPSLFRERLTRSTFMF"
XX
SQ   Sequence 4457 BP; 1275 A; 1012 C; 953 G; 1216 T; 1 other;
     cacagttcaa ccccaatttc cctctatgca actactgaat cgtcaagtgg aattgcaccg        60
     tcgtttgcgc aagtagttag ctctaagggc ggcgctctca ctaaccgggc aaaacgtaaa       120
     gctccagcag tctctgacgg catgttagca acccgcgctg ttatcgttac cacacctgat       180
     cctgaggagg gcggcaccct tcgttcaggg aaacgccgca aaattgccaa cagtgaaaca       240
     gacagatcat ctgcctctcg actaccatct aagaaccctc cttgctccat cacaccgcag       300
     ccaaagacta agacagtcat taaaatggaa caaacagtct catttaaacc gaagcaagcg       360
     cagtccgctg agtctacgaa agccgatctt tgttccaaat tggatcccgt gactttttca       420
     gtaacaaatg ttcatatgaa ggtaactggt gaagttacag tgaggtgtga gaccaaagac       480
     catgctgaga agttgtcaaa aacggcctct gagatgttcg ctgacaagta tgtcgtggaa       540
     attcaaagac ccttgaagcc aagagttaag gtcatcggat tttccaagga agtgagcgag       600
     gaagagtttc ttcccaaatt gatgaagcaa aatcgtggtc tggaatgctt tagtatgaaa       660
     gtagtgcgaa tcatcaaaaa cgaaacgcga agtagcaatc aagtgtcagc aattctagaa       720
     actgacgccc gcggatttga agaactcatc gaccgacaac gcctttacat cggatgggag       780
     cgatgcaggg ttatcgaagc taccgacgta ttgcggtgtt ttaactgctc cgagtatggc       840
     cataaagctg tttcttgtac aaaaactgct tgctgtccca aatgtgccgg tgatcaccag       900
     gtcagcgagt gtcaaagtga tttcgcaaaa tgcattaatt gtcatctaat gaacacaaac       960
     cgcacctccc cctacgataa gctgctcgac gtttctcact cgtcatggag tctagactgt      1020
     ccgatctttg cgaagcgcct aaatactgca cgacaaagga ttgacttctc ggcatagcaa      1080
     ttagacgaaa ctgctcagct gtacgcatcc cgactcaacc cttcttcgat ggatgctacg      1140
     aattccctcc agcgtgaaaa cctggctggg ccaggtaact ataagaatag tatatgtcct      1200
     gtcgaggcta ggaaggattc tacacttgta gtcagcaatc tccaactatt tcagtcgtcc      1260
     ttgatctcat tgccaacatt ggcccctgaa gatgttggcc atcccgacgt actgctacta      1320
     cctggatact atccgacggc gatggatttg atatgtgatg cccaacctaa cgaactaggt      1380
     ggcccaggta atgccatgaa cagtatatgt ccttccgaag caccaagaga tactgcacca      1440
     gccttaagag gatcccaaaa ttttcagaac cgaacgtgtt actcaagcga ggaggaaaac      1500
     aacaacaact tcagcattta ttatcagaat gtcagaggtt tacggacgaa gatcgacgat      1560
     ttttatatta tgacgcaaaa cggagactat gacgtaattg ttctaacgga aacctggctg      1620
     aataacgaaa tcaactctac tcagcttttt ggcagtgaat acacggtata taggaaagat      1680
     cgtgatccaa acatttccgg aaaattacga ggaggcggag ttttagtagc tgttaggaga      1740
     ggttttagtt catcctgcaa ttacgtagga attgatgacg accttgaaca cattttcgtc      1800
     aacatagatg gtggggtgcg tactgtgtgt gtaggtgtcg tatacatccc gcctgaccaa      1860
     tctagaaatt ctgacgtcat cgaacgacat atcaggtcta tctcgtcggt atcttattca      1920
     ctcaagttgc atgatttgca ccttctcttc ggggatttca atctaccgga tgtgagctgg      1980
     aactttgcgt caacgggata cgcctatcct gaggcttcgg aatccatctc ttccagtctg      2040
     aatttccttg acggcatgtc attgctcaat atgaaacagc tcaatgtcac aaggaactgc      2100
     ttgaatcgga tactcgattt gtttttcgtt aacgatgaag ccttgccgat gtgtaccctt      2160
     atggaaccac acgaagcact agttccagtt gacccaatgc atcctcctct gctaacatcc      2220
     ttgcaatgca ccgctccaat caagttcagc gatcaagatg tcgttcggat gttcgatttt      2280
     gcgaaaacgg atttcatttc attaaatgag gccatgcgag aaatcgactg gtcaacattg      2340
     agcctcgcca ccgatgttaa cgtagctgtt tctattttca atcatactct gctgcaactg      2400
     ttgccawcat ttgttcctgc ttctcgcccc cgtcagagtc ctcgatgggc caataatcat      2460
     ctgcgacatc tcaagcgaaa gcgctccaag gcattgagaa aattctcttc caatcggtgt      2520
     gctgttaata agagaagatt caatgaagcc agccgaagat acaaaaaata tagtcgtgaa      2580
     ttgtacagca ggtatgtgaa ccgcacacag agtgatttga agaaccatcc taaacgtttc      2640
     tggtcatttg ttaatgagaa aaggaaagaa actgggttac catccaccat gttccttggc      2700
     gatgaatttg cggatactac tatggacatc tgtaatctgt tcgcaaagca cttttccagt      2760
     gctttcgatg atggaacgac aacagcccaa cagatcgaaa atgctctact cgatgtacca      2820
     actgatatca tcaacattaa tatcgataga tttgacgaag cagatatcct agctggaatt      2880
     gcgaagctga aaccatcatc agctcctggt ccagacggaa tcccgtcaat tatatttaaa      2940
     aaatgcgcag atactctaag tggtcctctt aaaacattat tcgatttatc gattgcacag      3000
     tcagtgtttc caacagactg gaaaagatcg attatgttcc ctgccttcaa aaagggagat      3060
     aagcgcaacg ttacaaacta ccgtggggta acatcgctaa gtgcgggatc aaaattgttt      3120
     gagatcctgg ttaatgatcg tattttccga gcagttaagt cgtatatttc gcaagatcag      3180
     catggatttt ttgccggacg ttcaaccacc acgaatttgc tacagttttc gtcgttctgc      3240
     attaacacaa tagaaaaagg ttcccaaatc gacactatat acactgattt aaaatcggct      3300
     tttgataaag tgaaccatga tatcttgttg gcaaaattag agcgactagg catggctcgc      3360
     aggctcgtgg attggctaag atcttactta gccaatagac agttacgcgt taagctgggc      3420
     tccacagaat ctgatgcctt taacagtagc actggggtcc ctcaaggcag caatctgggc      3480
     ccagtactat tcatcatatt tttcaacgat gtctgcttaa cgctaccctc cggatgcaaa      3540
     ttagtttacg ccgatgatct caaattatac ttgacaattg aatcataccg agattgtcag      3600
     aaattacaaa agttgctcga tgttttcgtc gactggtgca gacggaatca tctgaccgtg      3660
     agtataggaa aatgctctgt aatatcgttt acgaggaaga aacatcccat taactggacc      3720
     tactacattg acaaccaccc actggacaga actaatgcgg taaaggatct tggagtattg      3780
     ctcgatacag cgcttaattt caaggaccac tacagccaga tcatttccaa agccaaccgc      3840
     aatttgggct ttattttcag aatttccaac gagttccgcg acccatattg cttgcgttcg      3900
     ttgtactata gcttagttcg ctccgttctt gaatcctcag ctgttgtgtg gtgcccatat      3960
     cacaatgttt ggatcgagcg gattgaaaaa gtgcagtcca aatttattaa gtatgcactt      4020
     cgatttctac catggcggaa tcgggatcag ctaccaccct acgaggacag gtgccgactt      4080
     cttggaatgg acacccttga aagacgtcgg aagatatccc aagggcactt tgttgcaaag      4140
     attctcttgg gtgaaattga tgcttcgcgg attttagctc aggtcaacat aaatactgga      4200
     cagagaatac tacgacagcg gagtttcctg aggttgcctt accatcggac agaatacgga      4260
     cagcatgatc ctattaggac tatgtgtgaa gcttttaata atttttttac catgtttgat      4320
     tttaatattt ctcctagttt gttccgtgaa cgtttgacta gatcaacttt tatgttttga      4380
     aactagcttt taatctttgt tagtatgttt ttttttttca tgtagaccaa tgagtccgat      4440
     gaattgtacc aaataaa                                                     4457
//
ID   CR1-88_AAe  repbase;    DNA;    INV; 4842 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-88_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4842
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1176-1176 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           384..1193
FT                 /product="CR1-88_AAe_1p"
FT                 /translation="MACNKCQKVTNDSDHIVCRGYCGNSFHMICVKLDYSL
FT                 RGILKDHDKNLLWMCDDCAELFSSDYFRKMSSRCTMENVPDETSIKSLKDD
FT                 IAGLKEIVSTLSSKVDAQPTTPLLSVPWPGTNSKIRHNTVPNTPKRVRDDG
FT                 FSREKPSNSRGTKPASEMIKTVAPPEELFWVYLSAFDPNTSENDMVEFVKN
FT                 CMELTADVEPKAVKLVPKDKDLSTLSFVTFKIGVNKSLKDVALSKDTWPEN
FT                 VYFREFENHSKNQRRVIRVSTGKSPHSGQ"
FT   CDS           1238..4693
FT                 /product="CR1-88_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEASNPPITVEPLLPATNSRPGPVFGIGEEVFQNSYA
FT                 GKYLSNMNIACSEIPAASSQSPSHNLHQSSSFAPPGRKPALSFMEASNPPI
FT                 TVEPLLPATYSRPGPVFGIGEEVFQNSQTGKHISIPNNTCPEVFATSSRSG
FT                 QQRVPLPLQQEQPIGFKDFPSNDFRPSAFSPSTEPHGSEQNRIISTSNRHQ
FT                 DNLLLYYQNLGGINSTIEKYRLAISDQCYDIMVFIETWLNDDTLSSQVFGP
FT                 EYEVFRCDRSIKNSRKATGGGVLIAVNSNLKPKAIDNTSWECLEQVWTTIN
FT                 LGDRKLFVCAVYIPPDRTRDIEYIEAHCRSVHAILETASAVDEIVVLGDFN
FT                 LPSISWISSDRGFLYPDTNHSQFHPGAVTLLDSYSTATLQQINSVTNENDR
FT                 YLDLCFVSDLDSSTSVVMAPCPLVKMVAHHPPLLVTIKHSLVHDSINSSAT
FT                 FSYDFHKADHRSIAELFTTLDWENVLDLNNIESAAQTFSAILAYAIDRHVP
FT                 KKSQEHKTGPPWQTTSLRRLKTFKKAALRRFTKHRTVPLRIAYVRLNHKYK
FT                 YASQRCFSRYQHNIQRNLKSNPKRFWKFVNEQRKVSGLPSAMRFNSIEGTT
FT                 PREICDMFSEKFASVFSREDLTADQVELAVSNVPRSSHAIGSFDIDETMIT
FT                 KASSQMKSSFNPGPDGFPSVLLKKHIDVLVTPLLFIFRASISSGVFPSCWK
FT                 IAHMYPVYKKGDKRDVNNYRGITSLCAVSKLFELVIMEPLKAHCQQQLSED
FT                 QHGFMPGRSTASNLICLTSYIMDSMVRRNQTDVIYTDLTAAFDMVNHDIAI
FT                 AKLDRFGINGRFLQWFRSYLTGRELKVVIGDCQTASFMSTSGIPQGSHLGP
FT                 LIFLLFFNDVHRQIKVPRLSYADDLKIFLEIHSIEDCDLLQQQLSSFADWC
FT                 TINRMIVNPTKCSVITFSRKRSPIHFSYQLMGAEIERVDHVKDLGVVLDTT
FT                 LTFNQHVSYVVGKASRVLGCIFRIAKNFTDVYCLKSLYCSLSRSVLEYCSE
FT                 VWSPNYSNGVERIESVQRRFLRFALRRLPWRDPFRLPSYENRCRLIDLEPL
FT                 HVRRNTARALFIADSLQGRLDCPTILEQININVAPRTLRNNLMLRLPLRRT
FT                 NYSMHGAINGLQRTFNRIASEFDFDTPRRTLRRRFSSFFCKRRW"
XX
SQ   Sequence 4842 BP; 1288 A; 1126 C; 1033 G; 1395 T; 0 other;
     acgttcagtc gtgtttatca ctaaacggtt attttatgtt tgtttgtata cattttcaac        60
     agttttaaaa tcacgattcc ctgagctatc gagagtgatg tgtttttgct ttctcgtggt       120
     tatgttgtgt tgctgttcgg ttcagtgaaa actgtgattt tttgtgaatt tgtggatgtt       180
     taaactggat ctgttgtgaa gaaaacataa acattctttg ctctatcctt gcgggcataa       240
     attgaatgaa cggttgtatg ctacattcga tccaattcac tacaacacat tgaagcgctg       300
     cacgttgtct accgaaaggc gatagcttgt tcgttggcga tacagtctgt actccacttt       360
     cacgtcttcc attgaccaca taaatggctt gtaacaagtg tcagaaagta accaatgatt       420
     ctgatcatat cgtttgtcgt ggatattgtg gtaattcgtt ccacatgatc tgcgttaagc       480
     tggattattc gcttcgtggc atactgaaag atcacgataa aaatctgctt tggatgtgtg       540
     acgattgtgc agaattgttc tccagtgact acttccggaa aatgtcttct cgttgcacga       600
     tggaaaatgt acctgatgaa acatctatta aatcgctcaa agatgacatc gcaggattga       660
     aagaaattgt tagcactctt tcttccaaag tcgatgcaca accgactact cctctattat       720
     ccgtgccatg gcctggtacg aatagtaaga taaggcataa tacggttccg aatacgccga       780
     agcgtgtgcg cgacgatggg ttttctagag aaaaaccatc taactctcgg ggtaccaaac       840
     cagcgtccga aatgatcaaa accgttgcac cacctgagga attattctgg gtttacctgt       900
     cagcgtttga tcccaatacg tccgaaaacg acatggttga attcgtcaag aattgtatgg       960
     agctcacagc ggatgtggaa ccaaaggctg tgaagttggt ccccaaggac aaagaccttt      1020
     caaccttgag ctttgtcaca ttcaagatcg gtgtaaataa atcgcttaag gatgtagctt      1080
     tatccaaaga tacttggcca gaaaacgtct attttcgaga gtttgaaaat cattcaaaaa      1140
     accaacggag agtaataaga gtttccactg ggaagagtcc acacagcggc cagtaaatca      1200
     atttgggatt ccgggacgca agcctgccct cagctttatg gaagcctcta acccgcccat      1260
     cacagtcgag cccctcctgc cagcgaccaa cagccgtccc ggtcctgtgt ttgggattgg      1320
     ggaggaggtc ttccaaaatt cgtatgcagg caagtacctt tcaaatatga acattgcgtg      1380
     ctctgaaata cctgctgctt ccagtcaatc gccatcacac aatctgcatc agtcttcttc      1440
     tttcgcacca ccgggacgca agcctgccct cagctttatg gaagcctcta acccgcccat      1500
     cacagtcgag cccctcctgc cagcgaccta cagccgtccc ggtcctgtgt ttgggattgg      1560
     ggaggaggtc ttccaaaatt ctcaaacagg caagcatata agcattccga acaatacatg      1620
     ccctgaagta tttgctactt ccagccgatc cggacagcaa cgagttccgt taccgctaca      1680
     acaggaacaa cctattggtt tcaaagactt tccatcgaac gactttcggc catctgcttt      1740
     cagtccatct acagagcccc acggaagcga gcagaatcgc attatatcga cctctaatcg      1800
     tcatcaggac aatctgctgc tgtactacca aaacctggga ggtattaatt caacaatcga      1860
     gaaatatcgt ttggcaatat ctgatcagtg ctacgatatt atggttttca tcgaaacttg      1920
     gctaaatgat gacactctct ctagccaggt gtttggtcct gaatacgagg tgtttcgatg      1980
     tgaccgtagc ataaagaaca gtcgaaaagc tactggtgga ggtgtattaa ttgcagtcaa      2040
     ctcaaattta aagcctaagg ctatagataa tacatcttgg gaatgtcttg agcaagtttg      2100
     gacgacaatt aacctcggtg atcgtaagct gttcgtgtgt gctgtgtaca tcccacctga      2160
     tcgcacacgt gacatcgagt atatcgaagc ccactgtaga tctgtacacg ccattctcga      2220
     gacggctagt gccgttgatg agattgttgt gctcggagat ttcaatctac ctagtatctc      2280
     gtggatttca tcagacaggg gtttcctcta cccggacact aatcactccc aattccaccc      2340
     tggagcggtc actcttcttg atagctacag cactgccact ttacaacaga tcaactctgt      2400
     caccaatgag aacgaccgtt atttggacct atgtttcgtt agtgatttgg attcgtctac      2460
     atcagtagtg atggctcctt gccctctcgt taaaatggtt gcgcaccatc ccccattact      2520
     cgtaacgatt aagcactcct tggtgcacga ttccattaat tcgtccgcca ccttttccta      2580
     cgatttccat aaagcggatc atcgcagtat cgctgaattg ttcacgactc tcgactggga      2640
     aaatgttcta gatcttaata atatcgagtc tgcggctcag actttctccg ctattttggc      2700
     gtacgcgatt gacaggcacg taccaaaaaa gagccaggag cacaaaaccg gacctccttg      2760
     gcaaaccact tccctgcgac ggttaaaaac gtttaaaaaa gctgccttgc ggcggtttac      2820
     taaacaccgc acagttccac taagaattgc ttatgttagg ctcaatcata agtataaata      2880
     tgccagtcag cggtgcttct ccagatatca gcacaatatc cagcgaaatt tgaagtcaaa      2940
     cccaaagcgc ttctggaagt tcgtcaatga gcaacgaaaa gtatcgggac taccatctgc      3000
     tatgaggttc aacagcatcg aaggcacgac tccccgcgaa atttgcgaca tgttttcgga      3060
     aaagtttgca agtgtgttct caagagaaga tttaactgcg gatcaagttg agctcgccgt      3120
     tagcaacgtt ccccggtcat ctcatgcgat tggaagtttt gatatcgatg aaactatgat      3180
     taccaaggcc tcatctcaga tgaaatcatc tttcaacccc ggaccggatg gatttccttc      3240
     agttcttcta aaaaagcaca ttgacgttct agttactccg cttcttttca tctttcgggc      3300
     atcgattagc agcggtgttt tcccatcttg ctggaagatt gctcacatgt acccagtgta      3360
     caaaaagggc gataaacgtg acgtcaataa ttaccgtgga atcacatccc tatgtgccgt      3420
     ctcgaagctg tttgaattgg ttattatgga acccctgaag gctcattgtc agcagcaact      3480
     gagcgaggat caacacggat ttatgccagg gcgatcaact gcatccaacc ttatttgcct      3540
     tacttcctat ataatggata gtatggttcg ccgtaatcaa acagatgtga tatacacgga      3600
     cctaactgca gcctttgata tggtgaacca tgacatagca atcgccaaac tagacaggtt      3660
     tggaatcaat ggcaggtttt tgcaatggtt tcgatcatat ctgacaggtc gagaattgaa      3720
     ggtcgttatt ggtgattgtc agactgcttc gttcatgtct acgtcaggaa tccctcaagg      3780
     aagccacttg gggcctttaa tttttctgct tttcttcaat gatgtacacc gtcagataaa      3840
     ggtcccccgg ttgtcttatg cagacgatct taagattttt cttgaaatcc actctatcga      3900
     ggattgcgac cttctccaac aacaactctc tagttttgca gattggtgta ctatcaatcg      3960
     catgattgtt aatcccacga agtgctctgt gatcactttt tccagaaaga gaagtccaat      4020
     ccatttcagt tatcagctca tgggtgctga aatcgaacgt gtcgaccacg tgaaggattt      4080
     gggagtggtc ttagacacga ccttaacttt taatcaacat gtgtcttacg tggttggtaa      4140
     ggcgtcacgt gttctaggat gcatttttag gatagctaaa aactttactg atgtgtattg      4200
     tcttaaatca ctgtactgtt ccttgtcacg ttctgttcta gaatactgct cggaggtttg      4260
     gagtccaaac tactccaatg gagtcgagcg tatcgagtct gtgcaacggc gattcttacg      4320
     cttcgccctc cgtaggctac cgtggagaga ccctttccgc ctccccagct acgagaaccg      4380
     ttgccgattg atcgatcttg aacccttgca cgttagacgc aatactgcca gagctttgtt      4440
     tatcgctgac tctcttcaag gtcgacttga ttgccccact attttggagc aaatcaacat      4500
     aaatgttgca ccccgtacac tgcgcaacaa cctcatgctc cgcttaccgt tgagacgaac      4560
     caattatagt atgcacggag ctattaatgg tctgcaaaga acatttaatc ggatagcctc      4620
     agaatttgac tttgacactc cccgacgcac acttcgccga cgtttttcaa gttttttttg      4680
     caaacgccgc tggtgatagt tgaatgtttt gtgtagtatt gacttgtgtt cactttaagt      4740
     ttaatttgac cttttgttag tattaagact agaattaagt tgacatcatt ggggctgttg      4800
     attgcctgtt gatgtattaa agaataaaga ataaagaata aa                         4842
//
ID   CR1-89_AAe  repbase;    DNA;    INV; 4416 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-89_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4416
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1177-1177 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..1123
FT                 /product="CR1-89_AAe_1p"
FT                 /translation="MDKKHCGECSLEINELEPIRCGFCDTYFHISQQCCGF
FT                 NNRANRDLFSNGKAMFICPKCRDILNGRSVCSFLKESLGPQSSSPMDLNLL
FT                 SNQVQKLSSLVESLSKQVENIVNERQAAIAVSTPSWPKTGVKRRRGNNGQT
FT                 VQATVERGTSTIDLSDLSVPFIVPPPQPPKFWLYLSGFQPLIKVEDVQKIV
FT                 ARCLNVFDPFDVVRLVAKDADIAKLTFVSFKIGLNPDHRELALSASTWPDG
FT                 LLFREFDDQSNKRRPGRVPVETPFDSVMNANQP"
FT   CDS           1087..4332
FT                 /product="CR1-89_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="DPFRQRYECESTIGRYFEDGGDQPVPTRGEYLILTSD
FT                 DPAPNFYPLQFTDGDGVAFNNPPLDERNHVDRGPHAIADVGRDIHTTRHLE
FT                 DGGGASTSVRGEYLSINSFGNGSSSVQPFQPSQHTRQMHVYFQNVRGLRTK
FT                 IDELFVAVNGCDYDVIVLVETNLDATVTSAQLFGENYAVYRNDRNTNSSHK
FT                 KSGGGVLIAIHRKLHSSSVQCVVDDLELVLARIRTAESSLFICAGYIPPEM
FT                 RSNIVFVKYFSDAIRDSLDCACDDDSIIVCGDFNQANLVWEQSEPFYVTVE
FT                 PSSVGPASAGLLDNMAMLNLQQYCRVSNPWNHTLDLVFANDDSCVVTEAAV
FT                 ALVKIDRPHPPLEIALFSTDSEPLFNHEDVPQLDFKRIDFTLLHGFLARLD
FT                 WTEILTCSDVNDAVRIFSDIVMNWLSSNVPKMRTPAKPPWGNARLRSLKRA
FT                 KNSCQRHYRKQRTPLHKRRFQDASDAYKSLNEHLYAQYVDRMQDGLRRYPK
FT                 RFWNFVNSKRKQTDGVPASVSFVDEVASTAPEKCELYAKHFSSVFNADCAT
FT                 VNDAMRASSTVPENVCDIGLPLVTDQVLRKAAKKMKSSITPGPDGIPVIVF
FT                 KKCIDVLTVPLCYIFNLSLQQKQFPAKWKKSFMFPVYKTGDKSDVRNYRGI
FT                 TSLCAGSKLFETVINDYLFAKTKAFISSDQHGFYPGRSVTTNLLRFTSSCI
FT                 NQLEDGKQVDAVYTDLKAAFDKIDHRILLHKLARMGASTAMVEWLESYLCD
FT                 RKLCVKIGSYTSAWFKNLSGVPQGSNLGPLLFALYFNDVAALLGVGCKLIY
FT                 ADDLKIYVVVESLADCERLQSLLNTFVRWCELNRMTLSINKCSVITFHRSA
FT                 VPLRMDYTIGDTTIQRVSHIRDLGVLLDSRLTFNDHRSEIIDRANRQLGFV
FT                 MRTTKNFTNVHCLKALYTSLVRSILESSSIVWCPYQANWIDRIERIQKRFV
FT                 RYALRLLPWRDRSNLPPYADRCCLLGLETLEQRRITQQAVTAAKVLNGEID
FT                 CPNLLAKLALNAPNRIQRRSLERMLAPQFHRSLFGYNEPLSSVMRAFNDVA
FT                 YLFDFGMSSTVFRRKILDSMRARFV"
XX
SQ   Sequence 4416 BP; 1159 A; 1038 C; 994 G; 1225 T; 0 other;
     tctggcatca ctgctgtata ttgttgattg tgttttttat actgatattt tttattgatt        60
     tttactgttt ttttcgtgtt aaatctccgt tcgcgtttgt gatctgtaag tgttacatcc       120
     tggagaacgt taggatcttg gagtaccccg attattgcaa tcctgagaga ttccggaacc       180
     tggttttcat cgtagttctt cggttcacta cattgctttt ctacgaccgt cagcaccagc       240
     tacaaacccc tatagaccac ttcgtttgat actatcacca actgaaagtg tacaaagcag       300
     aatggataaa aaacattgcg gggaatgcag cctggaaatc aatgagctcg agccgatacg       360
     atgtggcttc tgtgatacat acttccacat aagccagcaa tgttgcggtt tcaacaatcg       420
     cgcaaacaga gacctgtttt cgaatgggaa ggcaatgttt atctgtccca aatgccggga       480
     tatattgaac ggacgtagtg tttgctcgtt tctcaaagag tcacttggcc ctcaatcatc       540
     gtcacctatg gatctaaatt tgctttcaaa tcaagtgcag aagctctcta gtctggttga       600
     atctttgagt aagcaagtcg agaacatcgt taacgagcgc caggcagcta tagcggttag       660
     tacacccagc tggccaaaaa ccggtgttaa acgacgtcgc gggaataatg gccagacagt       720
     acaggccacc gtcgagcgcg gaacgagcac aattgacttg tcggacttgt cggttccatt       780
     catcgtgccc cctccgcaac ccccgaaatt ctggctctac ctatcgggat tccaaccgtt       840
     gattaaggta gaagatgtgc agaaaattgt tgctcgctgc ttgaatgttt tcgacccctt       900
     cgatgttgtt cgtctggttg ccaaggatgc agatatcgca aagctgactt tcgtctcgtt       960
     caaaatcgga ttgaatcctg accaccgtga actggctcta agcgcttcaa cctggccgga      1020
     cggacttctg ttcagggaat tcgatgatca atctaataag cgccgtcctg gaagggttcc      1080
     tgttgagacc cctttcgaca gcgttatgaa tgcgaatcaa ccataggacg ttattttgag      1140
     gacggtgggg accaaccggt ccccaccaga ggcgagtatc ttattttaac ttctgacgat      1200
     cccgcaccta atttctaccc gttgcagttt actgacggtg acggggtagc ttttaataat      1260
     ccgccacttg acgaacgcaa ccacgttgat cgaggcccac atgcaatagc cgacgttggg      1320
     agagatatcc acacaacgcg tcatttggag gacggcggag gtgcgagcac ctccgtcaga      1380
     ggcgagtact tgtctatcaa tagtttcggt aatgggtcat cgtctgtgca accgtttcag      1440
     ccctcgcagc acactcgtca aatgcacgtg tatttccaaa acgtcagagg tttgcgcaca      1500
     aagatcgacg agctgtttgt agcagttaat ggatgcgact acgatgtcat tgttcttgtg      1560
     gagaccaatc tcgatgcaac tgtgacgtct gcccaactgt ttggtgaaaa ctatgctgtc      1620
     tacaggaatg atcgcaatac aaatagcagc cacaagaagt ccggaggagg tgtccttatc      1680
     gctattcatc gcaaacttca ctcttcttca gttcagtgtg tcgtggatga tcttgagctc      1740
     gtactggccc gtatccgaac agcagaatcg tctctgttca tctgcgctgg atacattcct      1800
     ccagaaatgc gttcaaacat tgtgtttgta aaatacttct ccgatgctat cagggacagc      1860
     cttgactgcg catgcgatga tgattcaatt attgtttgtg gcgattttaa tcaagctaac      1920
     ctggtgtggg aacaaagtga gccgttctat gttactgttg aacccagcag tgttggaccg      1980
     gcgagtgcag gtttacttga caacatggca atgttaaact tgcagcagta ttgccgagta      2040
     tcaaatccct ggaatcatac cctggattta gttttcgcca acgacgactc atgcgttgta      2100
     actgaagccg ctgtcgctct ggtcaaaatt gatcgcccgc atcctccatt agaaattgcg      2160
     cttttttcta ctgatagcga gcccttattc aatcacgaag atgttcctca attggacttc      2220
     aaacgcatcg actttacatt gctacacggc tttttagcgc gtctagactg gaccgaaatt      2280
     ctcacctgct ctgatgtgaa cgatgctgta agaatttttt ccgatattgt gatgaattgg      2340
     ctttcgtcaa acgttccaaa gatgcgtaca cctgcaaagc caccatgggg gaatgctcga      2400
     ctccgttcgc taaagcgcgc gaaaaactca tgtcaacgcc actaccgcaa gcagcggacg      2460
     ccacttcata agcggcgttt tcaagatgca agtgatgcat acaaatcgct caacgaacat      2520
     ctttacgcgc agtatgttga tagaatgcaa gacggcctcc gtcgatatcc aaaacgtttt      2580
     tggaatttcg ttaactctaa gcgcaagcaa accgatggtg tccctgcctc ggtatctttt      2640
     gtcgacgaag tagcatcgac tgcaccggaa aaatgcgaac tctacgctaa gcatttttca      2700
     agtgttttta atgctgattg tgcaactgtt aatgatgcga tgcgtgctag ctccacagtg      2760
     ccagaaaacg tatgcgacat tggtttgcca ctcgttactg atcaagtcct acgaaaagct      2820
     gcgaagaaaa tgaaatcgtc tatcactcct gggcccgatg ggattcctgt tatcgtcttc      2880
     aagaaatgca tcgacgtcct aaccgttccg ttgtgttaca tcttcaacct ctcgctacag      2940
     caaaagcaat ttcctgctaa gtggaaaaaa tccttcatgt tcccagtcta caaaaccggt      3000
     gacaaaagcg atgttcggaa ctaccgagga ataacttcat tatgcgctgg ctccaaactg      3060
     tttgagacag tcatcaatga ttaccttttt gccaaaacaa aagcgttcat ctccagcgac      3120
     cagcatggtt tttaccctgg caggtcagta acaacaaatc ttcttcgttt tacctcaagt      3180
     tgcatcaacc agctagagga tgggaaacaa gtagatgccg tttacaccga tttgaaggcc      3240
     gcctttgaca aaatcgatca tcgtatccta ttgcacaaat tagctaggat gggtgcgtcg      3300
     accgctatgg tagagtggtt ggaatcgtac ctctgcgaca ggaagctctg cgtcaagatt      3360
     ggatcgtata cttccgcttg gtttaaaaac ttatctggcg taccgcaagg gagtaatctt      3420
     ggaccgcttc tcttcgcact ctacttcaac gatgttgcgg ctctactggg tgtcgggtgt      3480
     aagttgatat atgccgatga cctgaaaata tatgtcgtcg ttgaaagcct agcagactgc      3540
     gaacggctgc agtcgttact gaacactttc gtccgttggt gtgaactaaa tcgcatgacg      3600
     ctcagcatca ataagtgttc cgtgatcacc ttccaccgct ccgcagtacc acttcgtatg      3660
     gactacacaa ttggcgatac aacaattcag cgtgttagcc acataagaga tttgggtgta      3720
     ttactcgact ctagactcac cttcaacgat catcgttcgg aaatcattga tcgagcaaat      3780
     cgacagctgg ggtttgttat gcggacgacc aaaaatttta ctaatgtcca ttgtttgaaa      3840
     gcactctaca cctcgcttgt tcgttcaatt ttggaatcct cttccattgt atggtgtccg      3900
     tatcaggcga actggattga caggattgaa cgtattcaaa aacggttcgt gcgctatgct      3960
     ctacggttgc ttccgtggag ggaccgttca aatcttccac catacgctga ccggtgttgc      4020
     ttgcttgggt tggaaaccct tgaacaacgt cgaatcaccc aacaagctgt tacagccgcc      4080
     aaggtattga acggagagat agactgtccg aatctcctag caaagctagc tctgaacgct      4140
     ccaaacagga ttcaacgcag gagtctggaa aggatgcttg ctccacagtt ccaccgttcg      4200
     cttttcgggt acaacgaacc attgtcttcc gtaatgagag cattcaacga tgtagcgtac      4260
     ctatttgatt ttggaatgtc gtcaacagtg ttcagacgaa aaattttaga ttcgatgaga      4320
     gctagatttg tttaaattag tacagtaaca ttcattgaga cttatgtcag atgaattagg      4380
     aaaataaata ataaaatata aaaaataata ataaaa                                4416
//
ID   CR1-8_AG    repbase;    DNA;    INV; 1899 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-MAR-2009 (Rel. 14.02, Last updated, Version 2)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1899
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 634-634 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           129..1739
FT                 /product="CR1-8_AG_1p"
FT                 /translation="MPSPIVDQTVISRATSYTPLNMIDYTIPTFDIRTVEK
FT                 CLKSLKPSTAPGPDGIPSYIISKCYQSLAPVLTNIYNTSLSSGIFPRLWKT
FT                 SWMVPIFKKGDRSCASNYRGITSLCAVSKAFELLLYGPMLSATSNYIMDNQ
FT                 HGFVPKRSTLTNLTEFVSFCKRNLDSGGQVDAIYTDLKAAFDLISHDILIA
FT                 KLQKLGFSEQIVKWLHSYLTERSYKIKVNDHTSREVLGTSGVPQGSNLGPL
FT                 LFILYINDVGQLLAEHRFLLFADDVKLFAPINDTNDCINLQHAINLFSIWC
FT                 RDNAMVLCIEKCRVLSFYRSRSCTRFNYQIDNISVERTDTFRDLGIILDTR
FT                 LTFNDHLENIVSRGNQLLGWIIRSTQGFRNPMTIKTIYCAYVRSVLEYGSI
FT                 VSDPCTEQWSNRIEAIQRKATRYAVRLLPWRQGDVLPSYHSRCLLLGIQSL
FT                 KKRREIAKCLFISGLLNHHIDAPTLLATIEFNAPSRNLRTRQFISVPRYRT
FT                 RFGQSDPMSAMCRTFINNFDLFDFNIPQNVFRDRLRTQLT*"
XX
SQ   Sequence 1899 BP; 547 A; 455 C; 343 G; 554 T; 0 other;
     tatatatctt caatcgaaag gcatccccga aaattttggc gcttcatgga cagcagacga        60
     cgctccaagc acaatcatgg gcacgtcacc cgaagatatt tgcaacattt tcgctgaacg       120
     attttccgat gccttctcca attgtagatc aaacggtgat ctcaagggcc acatcttaca       180
     cacctctaaa catgattgat tacaccattc ctacgtttga tatacgcaca gtagaaaagt       240
     gcctcaaaag ccttaaaccc tctacagctc ctggtcccga tggcattccg agttacatca       300
     tcagtaaatg ctatcagtcc ctagcacctg tattaacaaa catatacaac acgtcactga       360
     gttccggtat tttcccacgc ttatggaaga cctcgtggat ggtaccaata tttaaaaaag       420
     gggatcgctc atgtgcttca aactatcgcg gtatcacatc actttgtgcg gtatcaaaag       480
     cttttgagct tctgctttac ggccctatgc tctccgctac atcgaattac attatggata       540
     accaacacgg gttcgtaccc aaacgttcaa cattaacgaa cctcactgaa ttcgttagtt       600
     tctgcaaacg taatctcgac tccggaggtc aagtggatgc tatttacacc gatctcaaag       660
     ctgctttcga cctcatctca cacgacattt taatcgccaa attgcagaag ttagggtttt       720
     cggaacaaat agttaagtgg ttgcattcct acctcacaga acgctcatac aagatcaagg       780
     taaacgatca tacatctaga gaggtgcttg gcacctcagg agtgcctcaa ggcagcaatt       840
     tgggcccgct gctcttcatt ctttatataa acgatgtagg gcaattgcta gcggaacacc       900
     gttttcttct gtttgccgat gacgttaagc tgttcgctcc tatcaacgat accaatgact       960
     gcatcaatct tcaacacgcc atcaacctgt ttagcatatg gtgccgtgat aatgcaatgg      1020
     tgctatgtat cgaaaaatgt cgtgttttgt ctttttaccg ttctcggtct tgcacacgat      1080
     tcaactacca gatcgataac atatccgttg aacgcaccga tacattccgc gaccttggga      1140
     tcattctcga cacacgttta acatttaacg atcacctaga gaatatagta tccagaggga      1200
     accaactact gggttggatt attcgatcaa cgcaaggttt ccgtaatcct atgaccataa      1260
     aaaccatcta ctgtgcctac gttcgatcag tgttagaata tggcagtatt gttagcgacc      1320
     cctgtaccga acaatggagt aatcgaatcg aggccatcca aagaaaagcg actagatatg      1380
     ctgtaagact cttaccatgg cgacagggcg atgtgttacc gtcataccat tcccggtgtc      1440
     tgcttttagg gattcagtcg ttgaaaaagc gccgtgagat agctaaatgc ctttttatat      1500
     caggactact taaccaccat attgatgctc ctactctatt agctacgata gaatttaacg      1560
     cgccatctag gaatctacgt acacgtcaat tcatatccgt ccctcgttat agaactcgtt      1620
     ttggccagtc tgatcctatg tcagctatgt gtcgaacttt cataaataac tttgatttat      1680
     ttgatttcaa cataccacag aatgttttta gagatagact caggacacaa cttacgtaat      1740
     aattttattt tcaaaataca ttttctattc ttgtgcacct gttctcccct atcgatttat      1800
     gtaccttaca tagtctataa gcactaattt aagtacattc atgtaggatc ttcaagatcc      1860
     cgatggatta atcaataaac atattaaaca tattaaaca                             1899
//
ID   CR1-8_CQ    repbase;    DNA;    INV; 5392 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5392
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 10-10 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           308..2278
FT                 /product="CR1-8_CQ_1p"
FT                 /translation="MTKSSNCDADVCLGKAANRSPRVRCEFCSASLHIKCA
FT                 NLDNTVVKPLRDSAGVCWLCSKCRDPVKRKATSNSNTMDLILQRTTSTMKL
FT                 VGALLDTVQILSQLTRTLCSRPNCSTIRPPVPDLDTVAGGNDPLNFTEIFE
FT                 SAMNGEKRPRSSSLSRQSLSQPEKITRVGVSVNQTAASNITVPPVSDSNDH
FT                 LAVDTEQFCSDPLFDAASKVALEVAALAAEFSAGYSTAPTEQTNPPASPKI
FT                 LASQVATAQQAAAAQQLATAQQAASAQQLATAQHAATAQHAASAQYAASAQ
FT                 HAASAQQLVTAQHAATAQHAASALYAATAQHAASAQQLATAQHAASAQHAA
FT                 STQHAASAQHAASAQQLAQQAAAQQAAAQQAAAQQAAAQQAAAQQAAAQQA
FT                 AAQQAAAQQAAAQHAATQQAAAQQVAAQQAAAQQAAAQQAAAQQAAAQQAA
FT                 AEQVATQQALQTAATANAQQTATINLAVASASASTDSTQKWYYVTRFQPHE
FT                 KSANIIRYIQSKTNCDPDQIVCNKLVSNNKSNGRPLSFLSFKITVPDSIET
FT                 IVNTHTFWPXGVTIQPFTENRTRAIASTKSKSNGPPRTRSTVPSRDRDVLP
FT                 SAVPNTRNTNLPPFHGQTPFPSGFRLPHPPLPPYLTPFPMIPQYQLYPNLR
FT                 NELRSLQP"
FT   CDS           2374..5163
FT                 /product="CR1-8_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MYAFTETWLTADTLSSQLFGPEYEVFRSDRTSVNSDK
FT                 MSGGGVLLAIRSALKPRQLFPPNCSIPEQVWVNVPLATSTLFICVVYIPPK
FT                 RDNDRPLIEQHRDSLAWVTSMMKINDSVMIIGDFNFPALRWTRSPTNKLIP
FT                 NLAXTPTNQLKLDVLDDYSVANLKQLNDIPNISNNVLDLCFVSSDTPTCCS
FT                 LLPAPQPLVKIDRFHSPLLVSISCKTHAFRASSCSFFHDFNNADFAGMCVY
FT                 LNNINWNDLLHNLDANGAAETLMNILRQAIDTFVPRKERQPARYPPWTNER
FT                 LRILKTAKRAALRKYSKHPTDRWRNFFWAASNRYSHLNNRLYHQHLHSIQN
FT                 RLKRDPKKFWNHVNEQRKESGLPTVMVRDDTEATNPEDICDLFRSQFSSVF
FT                 NDEIVDDAIISKAANNVPVRPPIGQHPFVNPDAVRRACLRLKGSTSCGPDG
FT                 VPALVLKKCGDSLAAPLSLLFNLSLRTGVFPSCWKKSFVFPVHKKGPKRDV
FT                 RNYRGIAALCATSKLFEQIVLDFIKFQCSSYIAQEQHGFMAKRSTSSNLVA
FT                 YTSFILRTMQHRKQIDALYTDLSAAFDKLNHRIAVAKLERLGFGGSLLDWL
FT                 RSYLAGRTMCVKIGDVVSAAFAVFSGVPQGSHLGPFIFLLYMNDVHLLLKC
FT                 HKLSYADDIKLYAVIETRSDALFLQDQLNIFANWCMDNRMLLNASKCAVIT
FT                 FTRKRSAIAFDYKLTNTLLSRTSCVKDLGVMLDSKLTFSDHLAYTTAKASK
FT                 TLGFIFRIAKKFRQISCLKALYCSLVRSTLEYCSVVWSPFYQNSIQRIESV
FT                 QRKFVRYAQRHVLWADPLNPPCYVERCKMLQLDLLSTRRDVAKVTFVTDLL
FT                 QSSIDCPSVLELIDFNIRRRTLRTHYFLRVPRALTNYGHHEPLSSMCRIFN
FT                 SCSDFFDFSLPRNTIKNRVLNHLRNL"
XX
SQ   Sequence 5392 BP; 1373 A; 1584 C; 1106 G; 1325 T; 4 other;
     agagcatctc ccattgtgcg taaacgtaaa caactctttc atatgcgcgc ttttaaaatc        60
     gcttttttca agtgtaaaac taaccgtttt tcttcgcgag tactattttg gtgcaaacta       120
     gtgaaggatt taacaggaca ctgtgataga taggtgtaat ttacgcgata aagtgatttc       180
     gtgtcgttta attacacatc acaacttgcg agtgtctccc aacgatacac tctttctcgc       240
     tccctcacgc acccggaccc gctatagtat ttttcgcttc caaacaacaa caatccaacg       300
     catcgaaatg acaaaatcga gcaattgcga cgcagatgtt tgccttggca aagcggccaa       360
     tcgctcgcct cgcgttcgat gcgaattctg ttcagccagc ttgcatataa aatgtgctaa       420
     tctggacaat accgtcgtta aaccactacg ggattccgcc ggcgtttgct ggttgtgttc       480
     gaaatgccgt gaccctgtaa aacggaaagc aacatctaac agcaacacca tggatcttat       540
     cctacaacgg acaacatcga cgatgaaatt agttggcgcc ctcctggata cagttcagat       600
     cttgagccaa ctaaccagga ccttgtgctc tcgacccaac tgcagtacca tccgcccacc       660
     tgttcctgac cttgacaccg tagccggagg caacgatcct ctgaacttca ccgaaatttt       720
     cgaatccgcc atgaatggcg agaaacgacc acgttcgagc agtttatcca gacaatcatt       780
     atcgcagccg gagaaaatca cgagagttgg cgtttcagtt aaccaaactg ctgcttccaa       840
     tattacagtc cctcccgttt cagactccaa tgaccatctc gctgttgaca cggaacagtt       900
     ttgttctgac cccctcttcg acgcggcctc caaggttgct ctagaagttg cagcccttgc       960
     ggcggagttc tccgctggat attctactgc accaaccgag caaaccaacc cacccgcctc      1020
     gccaaaaatc ttagcgtcgc aagtagccac cgctcagcaa gccgccgctg cacagcaact      1080
     tgccactgca caacaagccg cctctgctca gcaactcgcc actgcccagc acgccgccac      1140
     tgctcagcat gccgcctctg ctcagtatgc cgcctctgct cagcatgccg cctctgctca      1200
     gcaactcgtc actgcccagc acgccgccac tgctcagcat gccgcctctg ctctgtatgc      1260
     cgccactgcc cagcacgccg cctctgctca gcaactcgcc actgctcagc atgccgcctc      1320
     tgctcagcat gccgcctcta ctcagcatgc cgcctctgct cagcatgccg cctctgctca      1380
     gcaactcgcc cagcaagccg ccgcccagca ggccgcagcc cagcaagccg ccgcccagca      1440
     agccgccgca cagcaagccg ccgcccagca agccgccgcc cagcaagccg ccgcccagca      1500
     ggccgccgca cagcaggccg cagcccagca tgccgccaca cagcaagccg cagcccaaca      1560
     ggtcgccgcc caacaagccg ccgcccagca ggccgccgca cagcaggccg cagcccagca      1620
     ggccgccgca cagcaagccg ccgccgagca ggtcgccacc cagcaggctt tacaaactgc      1680
     cgccactgca aacgctcaac aaacagccac tatcaatctt gcagttgcct ccgcaagtgc      1740
     atccaccgat tcaactcaga aatggtatta tgttacacgt tttcaaccac acgaaaaatc      1800
     tgccaatatc atcaggtata tacaaagcaa aacaaactgt gacccagacc agatagtatg      1860
     taacaagctc gtaagcaaca acaaatcaaa cggtaggcct ttgtcatttt tgtcgttcaa      1920
     aataaccgtg ccagattcga ttgaaaccat tgtaaacaca cacacttttt ggcctgawgg      1980
     cgtaactatt caaccgttca cggaaaaccg cacgcgtgca atcgccagta ccaaatccaa      2040
     atctaacggc cctcctcgta cacgatcgac cgttccctct cgagatcgag atgtcctacc      2100
     aagtgcagta ccgaacacac gaaataccaa tctaccaccc ttccacggcc agactccttt      2160
     tccatcgggc ttccgcttgc cgcatcctcc gttgccacca tacctgacac cattcccgat      2220
     gataccgcag taccagttgt acccaaacct acggaacgag ttaaggtccc tccagcccta      2280
     gaaacgaatc tgctcctttt ttaccagaac attggtggct taaacactac aatcgctcag      2340
     cactcactcg ccatttctga tgcatcttac gatatgtacg cctttactga aacgtggctg      2400
     acagctgaca ctctatccag tcagcttttc ggccccgaat acgaagtgtt ccgttccgat      2460
     cgcacctctg tcaatagcga taaaatgtca gggggtggtg ttctacttgc tattcgatcc      2520
     gctctgaagc cacgccagct gtttccacca aattgttcaa ttcccgaaca ggtctgggtc      2580
     aatgttccac ttgctacatc aacgctgttc atttgtgtag tttatatccc cccgaaacgt      2640
     gacaatgatc ggcctctgat cgaacaacac agagattccc tggcctgggt gacatccatg      2700
     atgaaaatta acgatagtgt tatgatcatt ggtgatttta attttcctgc tctccgctgg      2760
     acgcgtagtc cgacaaacaa gctcataccg aacctcgcca wcactccaac gaatcagctt      2820
     aaactggatg ttttggacga ctactctgta gctaacttga aacagttgaa tgatatcccc      2880
     aacatctcta acaacgtgct agatctatgt ttcgttagct ctgacacacc gacttgctgt      2940
     agtctcctgc ctgctccaca gccgcttgta aaaatagatc gtttccactc tcccctactg      3000
     gtatcaattt catgtaaaac tcatgccttt cgagcttcaa gctgcagctt tttccacgat      3060
     tttaacaacg ctgactttgc tggtatgtgt gtctacctga acaacatcaa ctggaacgat      3120
     ttgctgcata acctcgacgc gaatggagcc gccgaaactc tgatgaacat cttacgtcaa      3180
     gcaatcgaca cgttcgtgcc caggaaggag cgacaacccg ctagatatcc accatggaca      3240
     aacgagcgcc tacggatctt aaagacagca aaacgggctg cgcttaggaa gtactcaaaa      3300
     catccaaccg accgctggag aaactttttc tgggcagcta gtaaccgata cagccacctg      3360
     aacaatcggt tataccatca gcacctacac tccatccaga atcgcttgaa acgggacccc      3420
     aagaaattct ggaaccacgt caacgagcag aggaaagaat ccggcctacc aaccgtgatg      3480
     gttcgtgatg acaccgaagc gacgaacccg gaggatatct gcgatttatt ccgctcccag      3540
     ttcagcagtg ttttcaacga cgagatcgta gacgacgcga tcatctctaa ggctgccaac      3600
     aacgtcccag ttcgccctcc gattggacaa catccgtttg tgaatcctga tgcggtccgc      3660
     cgagcttgct tgcgcctgaa aggatctaca agttgtggtc cagatggcgt tcccgcccta      3720
     gtgctgaaga aatgtgggga cagcttagca gcaccattgt ctctcttgtt caacctctcg      3780
     cttcgtactg gtgtgttccc gtcttgttgg aagaaatctt tcgttttccc ggtacacaag      3840
     aaggggccaa aacgtgatgt tcgcaactat cgtggcatcg ccgctctttg cgcaacaagt      3900
     aaattgtttg agcagattgt tttggacttc atcaagttcc agtgctccag ctacattgcg      3960
     caggagcaac acgggttcat ggctaaacga tccaccagtt ccaacctagt ggcatacacc      4020
     tcctttatcc tgcggaccat gcaacatcga aagcagatcg atgccttata cacggacctg      4080
     tctgcggctt ttgacaaatt gaatcaccgt atagctgtgg caaaactgga gcgtctggga      4140
     tttggtggtt cgcttcttga ctggctaagg tcctatctcg ctggtcgaac gatgtgcgtc      4200
     aagatcggtg atgttgtttc tgctgctttc gctgtatttt caggcgtacc ccaaggaagc      4260
     catcttggtc cattcatttt tttgctctat atgaacgatg tacatctact tttgaagtgc      4320
     cacaagctgt cttatgctga cgacataaag ctgtatgccg tcatcgaaac gcgtagtgac      4380
     gcattgttcc tgcaggacca gcttaacatc ttcgccaact ggtgcatgga caacaggatg      4440
     ttgttgaacg cttccaaatg cgctgtaatc actttcactc ggaaacgctc cgctattgca      4500
     ttcgactaca aacttactaa cacactcttg tcmaggacat cttgcgttaa ggatctcggc      4560
     gtaatgctag atagcaaatt aacattttct gatcacctag catacaccac agcgaaggct      4620
     tcaaaaactc tagggtttat ttttagaatc gctaaaaaat ttcgccaaat aagctgcctc      4680
     aaggcattgt actgttccct tgtccgwtcc actttggagt actgctcggt tgtgtggtcg      4740
     cccttttatc agaacagtat ccagcggatc gagtctgttc aacggaaatt tgttcgttat      4800
     gcacaacggc acgttttatg ggccgacccg ttgaatcctc catgttacgt cgagcgctgc      4860
     aaaatgttac aacttgacct tctctctact cgacgtgatg tggctaaagt aacattcgtt      4920
     accgaccttc tccagtcctc aatcgattgc ccatcagttt tggaactcat cgacttcaac      4980
     atacgccggc gcactctccg cacccactac tttctgaggg ttccccgagc acttacgaat      5040
     tacggacatc atgagccact atccagcatg tgtcgtattt tcaattcctg ttctgacttt      5100
     tttgatttct ctctccctcg caacactatc aaaaatcgag tcctcaatca tcttaggaat      5160
     ttgtagcgaa gatctgtgat attattttta aggaaagtga cataaatgtt aatcgttaat      5220
     tgtaataatt tgttagattt aagtatgctc gtcttgtatc attggagttt gtaaacttgt      5280
     tgatgcgtta agacgaggtg gttttgtgcc tctctgagag agtgtcctct gacacaactc      5340
     aaaggggctt ttccccacct ccaaataaaa aacaaaacaa aacaaaacaa ac              5392
//
ID   CR1-8_DEl   repbase;    DNA;    INV; 2840 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2840
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4598-4598 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 2840 BP; 810 A; 618 C; 436 G; 966 T; 10 other;
     atctccaccg cccataacgc aatttccttc gcgtctccac aacccggatt gttgccaagt        60
     cctagtaact ccatctctgc ttttgcacca cttggaccac aaactgaggc ttctcaagac       120
     tgggaggcgt ttctttattt aaaattctac tcccagacac tgtattttta aaagcattag       180
     atcctacaac ttggccggaa cacacaatta tgcatgagta tattcgcaaa gacgtctctc       240
     aagcttttaa ttctaaaaaa atacaacgct catttacaac tctttaccaa aatgttcgca       300
     gcctgttggg tawgctaagt agagctcwct ctaatagcca ctctttagat gtcgwtgtta       360
     ttgctttgac tgaaacctgg ctcttttata ctgtccacgg ccaagaaata tttatggata       420
     aatttgtcat ttataggtta gaacgactta ctcgaggcgg aggcgttcta atttccgttt       480
     tgaattcctt tccatctgag ctagtccstt atataatagt catagcatcs agtttattgc       540
     agtcaaaact ttaattaaca aagtcaaaat atttattacc tgctcatata ttccccctaa       600
     mtctgattct gcagtctaca atcatcactc ccgggcattt ctgctctcag cattttgcag       660
     ttccaacgca gtcaggatgg agaccaacac tagttttggg tgattccaat ttaccagttt       720
     tcatggttgc cagtgctgac tctaacattt tattttcaga aaatcaacac acttcatcga       780
     tggttgactg aactatctct gggtcaggtc aaccacgtta ctaattatag agaccgaatt       840
     ttcgacctaa tgtttgtcag tgatgtttca ctaacaaatg ttgtaagaac cactccagtt       900
     tctacacctg aagataggta tcatcctact ctatgcatta gcgtcgatat cgatgtttta       960
     agtccgactc aagctgcctc gccacgtgcc aagtgttttc ggaaaaccgc ttttttggct      1020
     taaactttta attgagtccg cccagactgg tcagttttac agacatttac cgatctggac      1080
     gaggcagctc tctactttaa cgaatggtgt actcggctac agggctataa aacaatcagt      1140
     gttatgcgga ttacgttgct cagtgtaggg agaatattaa aaacaaccct aaagaatttt      1200
     attcgttcgt taacactaaa agaaaatcga acctctatcc ttctactttt tatttacata      1260
     atcaaaatga atcctctgat attaaaatct ctacaattta tctgacacca tatccttatc      1320
     acttatctca cgctaacaat attaatatac ccccttttga agtttgtgat gttctgcaag      1380
     gtctgttgac aattgaccta tctttcactg caggccccga taaaatccca agctgcatac      1440
     ttaagcgctg cgcagaagct ctctgtatcc caatcacatt tcttttcaat ctttctttgc      1500
     aattatctta ctttccaatt tgttggaagg aatctttttt aatccctctt cataaaaaag      1560
     gatctaggtc gaacattgaa aattatcgtg gcattgccaa gcatcagcta tccccaagct      1620
     cctagaacga ttagttacat ccatcacagc atggctttgt aaaaaatcgg tccgcttcta      1680
     ctaatcttct agaattcata gtggttttct tcaaaatcgc caaactgatg ttatattcac      1740
     tgacttcagt aagcgtttga ctcagtaaat cacacactac ttcttcagaa actttccata      1800
     cttggttttc ctccttactt atgcgattga atttcgtcgt atctttcgaa tagaccccaa      1860
     agagttttat ttaaaaacga attgtccaat acggtgaaag ttacttctgg agtcccgcat      1920
     taktatttgt cttgtttatt aatgacctcc cccaggttct cttctattgc acaactttta      1980
     tgtacgctga cgatgttaaa atttgtttgt cattttctga tttgagctcg catctctgcc      2040
     ttcagtcaga tctaaascaa tttcaggcgt gggtctcgaa caacctgtta ttacttaatc      2100
     attctaaatg caagtccatg tcattctatc gaacttctgt ccatcctatt tcgtatattc      2160
     ttggaaactc gtctttggag caactaacta aagtaaatga tcttggtgta ctatttgatc      2220
     acaaattatg ttttaatagc catatttcag tcattgttaa taaagcgcat ggagtcctag      2280
     cttttattaa aagatgggat aaagagtttg atgatcctta tacaactaaa gcactgtatg      2340
     ttagcttagt tcgcccaatt cttgaatatt gctcatgcgt ttggagccct catataatca      2400
     ctaacagaat ttaatagaat cagttcaaaa aaatttttat attttactgc cgcataggca      2460
     attaccgccc tacttakcaa gattaaacct aattgacgaa cacactttaa gttgcagcat      2520
     tacggtgctc tctcctttct tcttggcaag atatgcgtac ctagatatac tcgtgcattt      2580
     ckccccctcg tctgccaatt tgcaggtcta attatgcact tcacgaacct tttcgagttt      2640
     tgtgtacaac tataactttg tttatccatt tatatgtttt gaaaaatctg ttcctaatat      2700
     ttcgtcccaa attgttcata ccttaagacc acaaatgtct agatataaaa aatcttagtt      2760
     atatagttat attgttatta ttttaaatta gttttataaa ttaatgttag gagcattgtt      2820
     aactctaagc aaaaaaaaaa                                                  2840
//
ID   CR1-8_DTa   repbase;    DNA;    INV; 4430 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.08, Created)
DT   01-JUN-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4430
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1699-1699 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           520..1509
FT                 /product="CR1-8_DTa_1p"
FT                 /translation="MSLRCSAKKCDFGGNIACETYLLCWLCDNCSHVKCGG
FT                 GGHNGRIADLLSKKSGFTWSCEACRGIEMEMRIFMRETRNGFQRVRKQFAA
FT                 LNNEFLSVESRFLELKLLSESPTETNLASNTTIAPVAITATHQPLPAAPGP
FT                 TYNRMDYTEPANGLTEPAAALHVEPISTAAPITVAPVAPAIASPSASVRRK
FT                 TGVVSGSAQLDTRKADAAASTTAPVDPPLMGVPPPSRSSGSRIRAVSPRRA
FT                 IFVSRLVPDATPDAVKNHLCSKLEATSDNFIVTKFNFNHARKISSFKIFLP
FT                 PSLLSRALEPTLWPEHTIVHEFLQKDSNPSSKITDPKN"
FT   CDS           1479..4337
FT                 /product="CR1-8_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="PEFQNYRSKKLDNIFSIHYQNVRSLLGKLSQIHTNSA
FT                 AFDFDAIALTETWLNSSVFDHEIFIHKFTTYRRDRPSFAGGVLIAVKNDFS
FT                 SELFPYANNDGIEFIAVKVRVGATFIFLTCSYIPPCSDISVYSSHLSAIQL
FT                 VMSALGCADSLIVMGDFNLPLVSWLPCDDTNFLLPNTTHDFIEGITDLSLV
FT                 QINSVKNIRDRLLDLIFVSDSSLATVSRANPISLPEDPYHPTLAISVEFSS
FT                 PSSDSVTACPAKCFRKTDFNGLNLHLSGIDWSFLYAFQNIDSAVHAFYASI
FT                 LSALDTFVPEVTITSTSKPPWFTRNLSYLKNKKSRLFKKYQKSGSLVDFAQ
FT                 YSSTRSQFLTTNSQCYMNYLSQCKENFRTDPKQFYSFVNSKRKSNAFPSSL
FT                 RYRNSAESSNLGISNLFASFFQSTYSTQLYVPRCPYPYNLPHANNIFLASF
FT                 TEGDVLDGLSSIDNSYAAGPDMVPSCILKKCAQNLARPITHLFNLSLNQSC
FT                 MPVIWNESYIIPLHKKGSRSDVENYRGIAKLSAIPKLLEHLITHQLQHLCS
FT                 SLISPSQHGFFKHRSTTTNLLEFSSIINRGFQSRLQTDVIFTDFSKAFDSV
FT                 NHSILLLKLSHLGFPPNLLKWIASYLSNRTQRVLFNNVFSNVVNVTSGVPQ
FT                 GSHLGPLLFILFINDLPQVILNSSILMYADDVKICLSYSDWYLHTRLQLDL
FT                 DEFQNWCQNNLLFLNHTKCKVMTFHRSSPHLVSYSLGNHTLDRISVTNDLG
FT                 VLFDHKLCFNNHIAAMVNKAKGVLAFIKRWSKEFDDPFTTKTLYVSLVRPI
FT                 LEYCSCVWSPQYMEQQAIIESVQKQFLIFALRNLNWDSGRLLPPYRSRLQL
FT                 IDMPSLYHRRICNGVMFVHKLLLGLVDSQTLLSYIDLTVPSRFTRTFRPLR
FT                 LPLCRSNYAQHEPFRVLCHNYNTLSDILSPNVTLSSLPCKIYNYLNSNM"
XX
SQ   Sequence 4430 BP; 1121 A; 1096 C; 756 G; 1455 T; 2 other;
     caccctttct gaagtcggac gtgtttttca atcgctccca catatttctg ccccgcgttg        60
     aaaatattgt gaccatttag ctactgttcg gttttataag ttatacttaa caacgccgtt       120
     ctattccgat agccgaagtt gcataagaca gttttattgt cgagttgttt taacatattc       180
     aattcgacga aaagcgcaag caaagacatc gccaaacaat ttgcctagtt tgttgttgtt       240
     tggccctgtt tgccgttctc tgccgcagtc taccgctctc tgttacatcg ctcatctact       300
     tgtcgcaaag taacggaact tctggcgctc gcactcagcg gacgctgatt ccacctgcac       360
     ctgctctctt tcgtctctgc cgtgctcatc tcttcgtact catcgccgct ggatttgctg       420
     cttgctgtga taacgctgct cctcgctact tgctctctta tctatcgctc ttagtctggt       480
     ctgtactctg cgcacacagt ggtttaacta gctgccaaaa tgagtttgag atgctctgct       540
     aagaaatgcg atttcggtgg caacattgcc tgcgaaacat acctattgtg ttggctttgc       600
     gacaactgct cgcatgttaa atgtggtggt ggtggccata atggtcgcat agccgatctc       660
     ttatccaaaa aatctggatt cacctggtcg tgtgaggcat gccgaggaat tgaaatggaa       720
     atgcgcatct ttatgaggga aacacgaaat ggtttccaga gggttcgaaa acagttcgct       780
     gccctcaata acgaattcct ttcagtggag tcgcggtttc ttgagctgaa actgctaagc       840
     gaatcaccaa ctgaaaccaa cttggcgtct aacaccacta ttgcgcccgt tgccataact       900
     gccacgcatc aacctctacc cgctgcaccc ggacctacat ataatcggat ggattatacc       960
     gaacctgcca atggcttaac tgaacctgct gctgcccttc acgttgaacc catctcaacc      1020
     gctgctccaa taacagtagc tcctgttgct cctgctattg ctagtccatc tgctagcgta      1080
     cggcgcaaaa ctggcgttgt ttcgggttcc gcccaactgg atactcgtaa agctgacgcc      1140
     gctgcaagta ctactgcccc tgtggatcca cctctcatgg gagtaccgcc accctcacgg      1200
     tcctctggat ctcgtataag ggctgtcagc cctcgcagag ccatttttgt atcccgtctc      1260
     gttcctgatg ctacacccga tgccgttaaa aaccatttat gctctaaact cgaagctaca      1320
     tccgataatt ttattgtaac taaatttaat tttaaccatg cgcgcaaaat ttcttcattt      1380
     aaaatatttc ttccaccttc tctattatca cgagctcttg aacctacatt atggcctgaa      1440
     cacacgatag ttcatgaatt tttgcaaaaa gattctaacc cgagttccaa aattaccgat      1500
     ccaaaaaact agataacata ttctccatcc actatcaaaa cgtacgcagt cttttgggta      1560
     aactgagtca aattcatact aatagtgctg cctttgactt tgatgccatc gccttaaccg      1620
     aaacctggct taattcttct gtcttcgatc atgaaatttt tattcataag ttcaccactt      1680
     atagaaggga tcgtccttct tttgcgggtg gggtccttat agcagttaaa aacgattttt      1740
     cctctgagtt gttcccctac gccaacaatg atggaattga atttattgca gtaaaagtcc      1800
     gcgtcggtgc tacttttatt ttcctaactt gctcatacat ccctccttgc tccgacataa      1860
     gcgtttattc aagccacctt tctgccattc aacttgtgat gtcagcctta ggctgcgctg      1920
     acagcctcat tgtgatgggt gactttaacc ttcctctcgt ttcatggctt ccttgcgatg      1980
     atacaaactt tttgttacct aacactactc atgatttcat cgaagggata accgatcttt      2040
     ctcttgttca aattaactcc gtaaaaaata tccgcgacag acttctagac ctgatttttg      2100
     taagcgattc ttcgcttgca actgtgtcga gagctaaccc gatatccctt ccggaagatc      2160
     cttatcaccc aaccctagct atttctgttg agttttccag cccaagttca gattctgtaa      2220
     ctgcgtgccc tgctaaatgt ttcagaaaaa cggattttaa cggtcttaat ttgcaccttt      2280
     cggggatcga ctggtcattt ttatatgcat tccagaatat tgattctgcc gttcatgctt      2340
     tctacgcttc tattctctcg gccctggata catttgttcc cgaagttact attacttcaa      2400
     cctccaagcc tccgtggttt acaaggaatc tttcttattt aaaaaataag aaatctaggc      2460
     tatttaaaaa ataccaaaaa tctggatctt tggttgactt cgctcaatat tcctccaccc      2520
     gctcccaatt cctwaccacg aatagtcaat gttacatgaa ctatctctcc cagtgcaagg      2580
     aaaacttccg cactgatcct aagcaatttt actcgtttgt taactccaaa cgtaaatcta      2640
     acgcatttcc ttcgtccctc cgttatcgta atagtgctga atcttctaat cttggtatat      2700
     caaacttatt tgcttctttc ttccagtcaa cttactctac acaactctat gttccccgtt      2760
     gtccgtatcc ttataaccta cctcatgcga acaatatttt tcttgcatct ttcacggaag      2820
     gtgatgttct tgatgggttg tcttcaattg acaattcata tgcagcaggt cccgatatgg      2880
     ttccaagctg catcttgaaa aaatgtgccc aaaatcttgc acgccctatc acacatttat      2940
     ttaatctatc tctgaaccaa tcctgcatgc cagtsatttg gaatgaatcc tacattattc      3000
     ctctgcacaa aaaaggttca aggtctgacg ttgaaaatta ccgaggcatt gcaaagcttt      3060
     cggctattcc caaactgctc gaacacctga tcacgcacca actgcaacac ctctgcagca      3120
     gtcttatatc tccatctcag catggtttct ttaaacatcg ttcaaccacg accaatcttc      3180
     tcgagttttc ttctatcatt aatcgaggtt ttcagagccg cttgcaaacc gacgtaattt      3240
     tcaccgactt tagcaaggct tttgattcgg taaaccactc gatacttctg cttaagcttt      3300
     cgcatttggg atttcctcca aatcttttaa aatggattgc gtcttacttg tcaaaccgta      3360
     cacaacgtgt tttgtttaac aatgtgtttt caaatgttgt caatgtaact tctggtgttc      3420
     cacaaggtag ccacctgggt ccattacttt tcatactttt tataaatgac cttccccaag      3480
     taattttaaa ctcctccatc ctcatgtatg ctgacgatgt taaaatctgt ttgtcttatt      3540
     ctgactggta tctgcatacg cgccttcagc tcgaccttga cgaattccag aattggtgcc      3600
     aaaataatct tctttttttg aaccatacaa aatgtaaagt tatgactttt caccgttcct      3660
     ctcctcatct tgtctcatat tccctcggaa atcataccct tgatcgaatt tctgtgacaa      3720
     atgaccttgg tgttcttttt gatcacaaac tgtgtttcaa taatcatatt gcagccatgg      3780
     taaacaaggc caagggtgtc ttagcattta taaaacgatg gtccaaggaa tttgatgacc      3840
     cgtttactac caagactctg tatgtatcgt tagtgcgtcc gattttggag tattgttctt      3900
     gtgtttggag cccacaatac atggaacaac aggctattat tgaatctgtt caaaagcaat      3960
     ttttaatttt tgcattgcgt aatttaaatt gggactctgg tagattattg ccaccttacc      4020
     gaagtaggct acaattaatt gacatgcctt ccttatacca tcgacgaatt tgtaatggcg      4080
     ttatgtttgt tcataagctt cttctcggtt tagttgattc acaaactctc ctttcctata      4140
     ttgatctcac ggttccttca agatttacac gcacgtttcg acctttgcgc ttgccattat      4200
     gtaggtctaa ctacgctcaa cacgaacctt ttcgtgttct ttgccacaat tacaatactt      4260
     tatctgatat cctctcccct aatgtaactt taagttcttt accgtgtaaa atttacaatt      4320
     acctaaattc aaatatgtaa atttattatt gtataccgca tttaatgcct aattgttagt      4380
     tttattgttc aagtctaagt tagcagttaa tcgctaaata aataaataaa                 4430
//
ID   CR1-8_Hmel  repbase;    DNA;    INV; 4071 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4071
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-4071
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..3720
FT                 /product="CR1-8_Hmel_1p"
FT                 /translation="MDNIIKLLNNVDESSISDTHICTPEQSNKILCNSTHY
FT                 LKTYCQNIRSINCHFLDLEVFLNRFSFDLEVIVLTECWLSCAKNGQIPEIN
FT                 GYSSHKTTKHLNQSDGVVVYVKTFLNPIVEELDLNASASGLLVKTKFDTAI
FT                 LCIYRSPSTENIDKFLDALNSILPTLRKFQSVVLTGDFNINIKSPLDLRSQ
FT                 NYLNCLAFHGFLPTHTVPTRGNNCLDHTFVRTKCNVTTLIFESTITDHYSS
FT                 LACVKIKQARALEVSIVSKIDYESLDTIFKNLDFTNILSIEDPNTATDELV
FT                 ILLSKVIQEHTTIIKRSTRKRILKPWITTGLLRCIRNRDALHKKIKLSPNN
FT                 ETLQITYKRYRNFCTKILKKAKRQYDTKLLEKSCNNTKALWNAIGTITYTT
FT                 KFRHSSTQLIQQSHSPIYSCNNVNSFFVNIGKELADRSNMHSSQQLTKTLS
FT                 HTYTNLSSFVLEETDNDEILQSINSLRSNASTGWDGISSTILKRYSAALTP
FT                 VLCHIFNRSFQASVFPSSFKKAIIHPIFKGGNGNQVNNYRPIAVLSALSKV
FT                 LEHLVNKRLRFYLEHFNIISKQQFGFRRNKSTAEAVHELTTFIVTNLNNNK
FT                 KVXTVFLDLAKAFDTVPITILLQKLESIGVRGQQLKFFQSYLTDRTQMVKI
FT                 GNHVSDELRIQYGVPQGSILGPTLFLIFINDLCNLSIPNSKIVTYADDTAI
FT                 TFYEDSWSEIQTVAQTGITLVLNWLRSHTLTLNTDKTKFITFSSKLTSQPK
FT                 NPITLIAHSCITQFGHNCQCSQIASVNNIKYLGIILDKTLNFKAHVEALTG
FT                 RIRKLIFIFRTLRYVANQFIIRNVYYALGRSVVSYCISCWGGASKTVMLPL
FT                 EIAHRAILKVATFRPILYSTTQLYKDCNVLSVRQLFVLDTIVRQHKITPYV
FT                 KITKRRKDNVCPLPVIRYSFSKKFFFYLGPFLYNKINTSTSMYNLSIHKCK
FT                 ATVRSFLQEKTYEETELFLQTLL"
XX
SQ   Sequence 4071 BP; 1388 A; 827 C; 596 G; 1252 T; 8 other;
     ccaagaaact aaaaaggacc tctactgcct tatacaacaa ctatcacaga tattacaact        60
     tgaattgcag gaacgagata ttagggacgt agcaagacaa ccgtctaaac gggaaaacag       120
     agtatcaaat attactattg aattctcaaa cacattgact aaatatgatt tactggcgag       180
     tgctaaaaat ttcaacaagc ggaacccgga caacaaattg aattcgactc atcttggctt       240
     cgaaggcgct gcctctcctg tttatattgc tgagcagtta acatctcaat ccaagaaact       300
     tttttatatc tcaagaaact ttgcaaaaac taatcaatat acccactgct ggacatccaa       360
     cggcagggta ttgctgagaa agggaaagga tactcctcat attcttgtta aaaatgaaca       420
     acaattacat caattggtca tgctaacgac aacatgacta tatgactgct ttatagtagt       480
     actctttcgc tttctcgtca ttgctttcga taatgttatt ggtttgtctt tagttttagg       540
     tttatttttt gttattatta ttgtaatcac acatacatac atacamagtc atgcacaact       600
     ctacatacac cgcaacttat taataattaa aaacttgaaa ttatatccta gtggcaaaat       660
     gttcaatgat atgataaatg aaaaatatac actaatgcat tatatagcct tagtaatgtt       720
     taggagtccc tacattccgg tcaactctgt gacaatgtta aggacaatcg ctaaactaaa       780
     tctgtgatgg ataatattat aaaattatta aataacgtcg acgagtcgtc aatatctgat       840
     actcacatat gcactcccga acagtctaat aaaattttgt gtaacagtac ccactattta       900
     aaaacatact gtcaaaacat aagatccata aattgccact ttcttgactt ggaggtgttc       960
     ctgaatcgct tctcttttga tttggaagta atcgtactta cagaatgctg gctgtcctgc      1020
     gcaaaaaatg gtcaaattcc cgaaataaat ggttattctt ctcataaaac tactaagcat      1080
     ttaaatcaaa gcgacggtgt cgtagtgtat gtaaagactt tcttaaaccc aatcgtagaa      1140
     gaactagact tgaacgcatc tgcttcagga ttattagtta aaacaaaatt tgacacagct      1200
     atcctttgca tttaccgctc accgtctact gaaaatattg acaaattttt agacgcatta      1260
     aatagcatac ttccaacgtt acgtaagttt cagtcggttg ttttaacagg agactttaat      1320
     ataaatatta agtcaccttt ggatcttcgt tctcaaaatt atttaaattg tcttgcattc      1380
     cacggctttc tccctaccca cactgtaccg actcgaggaa ataactgtct cgatcacact      1440
     ttcgttcgta caaaatgtaa tgtcactaca ttaattttcg aatcaaccat cacggaccac      1500
     tactcttctc tggcatgtgt caaaattaaa caagcgcgag ccttggaagt ctctatagtg      1560
     tctaaaatag attatgaaag cctagacaca attttcaaaa acctagactt tacaaacatt      1620
     ttatctattg aagatccaaa tacagcgaca gatgagcttg taatcttgtt atcgaaagtt      1680
     atacaggaac ataccaccat aatcaaacga tctactagaa aaaggattct caagccttgg      1740
     ataacaacag gcttacttag gtgtatccga aatagagacg cgttacacaa aaaaataaaa      1800
     ttgtctccta acaatgaaac tcttcaaatt acttataaac gttacagaaa tttttgtaca      1860
     aagatattga aaaaggctaa aagacaatat gacactaaac tgttagaaaa atcctgtaat      1920
     aatacgaagg cactgtggaa cgctatagga actataactt acaccacgaa atttagacac      1980
     tcatctactc aacttattca acaatctcac tctcctattt actcttgtaa taacgtcaac      2040
     agcttttttg ttaatatcgg gaaggaactt gcggatagaa gtaacatgca ctcatctcaa      2100
     cagttgacaa aaaccctttc acatacctat actaacttat cctcctttgt tcttgaagaa      2160
     actgataatg atgaaatcct acaaagtatt aactctctta gatccaatgc ttctactggg      2220
     tgggacggaa tttcatcaac tatattaaaa agatactctg cagcactgac acctgtgttg      2280
     tgccacatat tcaatagatc ctttcaggct tcggtctttc catcttcatt taaaaaggct      2340
     atcattcatc ctatcttcaa ggggggtaat gggaaccaag taaataatta tcgtccaatt      2400
     gcagtgttaa gcgcyctttc taaagtattg gagcacctcg tcaataagag actcaggttt      2460
     tacttagagc attttaacat aatttcaaaa caacaatttg gttttcgtag aaataaatcc      2520
     acagctgaag cagttcacga attaactact tttattgtca ccaatctcaa taataacaaa      2580
     aaggtamtca ctgtatttct tgatctcgct aaagcctttg acaccgttcc cattacaatt      2640
     cttttacaaa aacttgaaag tataggtgtc agaggccaac aacttaaatt ttttcagagc      2700
     tatttgacag atcggacgca aatggtcaaa ataggtaacc acgtaagtga tgaacttcgt      2760
     atacaatatg gggtgcccca agggagtatt cttgggccaa ccttgttyct aatttttata      2820
     aatgaccttt gcaatcttag tataccaaat tcaaaaatcg ttacgtacgc agacgacact      2880
     gcaatmactt tttatgaaga ttcctggtcg gaaatccaaa cagtggctca aactggtata      2940
     acacttgtcc ttaattggct acgctctcac acacttacgc tcaatactga caaractaaa      3000
     tttatcactt tttcttccaa actaacctcc caacccaaaa atcctattac cctcatagcc      3060
     cactcatgca tcacacaatt tgggcacaat tgccagtgct cacagatagc ttcggtaaac      3120
     aatataaagt acttgggtat tattttggac aagacattaa attttaaagc tcacgtggaa      3180
     gccctaactg gcagaatacg aaaattaatt tttattttta ggacacttcg atacgttgcg      3240
     aatcaattta ttatacgcaa tgtctattat gcactcggtc gatctgtagt gtcttattgc      3300
     atatcttgtt gggggggggc ctctaaaaca gtgatgctcc cactcgaaat tgcacacaga      3360
     gccatcctga aagttgccac ctttcgaccg atcctttatt cgactacgca actttataag      3420
     gactgcaatg ttcttagcgt caggcagtta tttgtgttgg atacaatcgt acgtcaacac      3480
     aaaatcaccc cctacgttaa gataactaag cgacgtaaag ataatgtttg tcctctccct      3540
     gttatacgtt actctttttc taaaaaattt ttcttctatc tgggcccttt cttatacaat      3600
     aaaattaata caagtacttc catgtataat ytatctatcc ataaatgtaa agcaactgtc      3660
     cgttchttct tacaagagaa aacatatgag gaaacagaat tatttctaca aacattatta      3720
     taaactatat tataaaaatc ttatactaca tgcataaaac atacatattc atatacatac      3780
     cttacatata acacacatac acatacacac acacacacac acgcacacac atcttatata      3840
     ctcaccaaaa tatttataat attaaagaga taattaggtt ataatataat atgtacatta      3900
     agacttgtaa ctcgtataaa ggaacatttc atttagtacc ccccgtggga tacggcactg      3960
     ttactcttta ctacgggtta ctttgtaacc tatctaagag gacagtacct taaccaaatt      4020
     gtatctaata agtgtttaaa taaagatatt attattatta ttattattat a               4071
//
ID   CR1-8_HMM   repbase;    DNA;    INV; 4382 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-8_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4382
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2785-2785 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Temporarily classified as CR1, but
CC   it is positioned at a basal lineage more related to Daphne, L2,
CC   L2A, L2B and Crack.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..1042
FT                 /product="CR1-8_HMM_1p"
FT                 /translation="MAKCTHCSKLIAKKNPGLECNKCSVIVHATAICSGLT
FT                 AKQLNSLRSAENLEWTCRDCSQKSPRRGSFITPQEEVEDDEEVQQQSYYPF
FT                 DMKKLLNDLTTEINKIIKKELRETNTALQYCSEKVDEFLECMEAFKDKVKQ
FT                 LEKKTIDLENKYKSTDNKICALEQRLNEYEQKELNKNIEIMGIPYLENENL
FT                 EEISNAIAKKLHKNVADIKKIKRVPTPPGRLGKLKFEMYDEIKRNNWIKEA
FT                 KTTQIYVDNILTTTGNKEMHGHIYIREELTYYNRTLLWNAKQICKDKFKFV
FT                 WCKEGKILVRKSEKSKIFTIRSDEDLKELVK"
FT   CDS           1095..4016
FT                 /product="CR1-8_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MASSITSNNITEIYDCVDINEYFKHVSKYNCNLTCIH
FT                 INIRSLIKNFVYIELIVAKAKRNIDVLILSEVGITENLSTLFYLDGYTMYT
FT                 QLRNGRKGGGIIMYISKKHKFKLNNRVTKYFECITGQLTTPSKRIMYLCAV
FT                 YRPPSYNALHFIRELGSILIAIPDKDLLVLGDMNINLRSYNNIRTQYLNLM
FT                 SENGLECGISDYTRIEATIDYTSKTCIDHIFLRSHTQDAVSAAVATVLADH
FT                 RLTIITCLEPSNIQAVSQYKIKFDNNIIQNELKNVKWESICNTDCPNTIYK
FT                 ELKLKILQCYEAGEYKVKIKNSKRNKQNWVNFKVVKVCKEKDSKFKEWKND
FT                 INNRILKLEYTKIRNKCNKIIHQQKDKSIQNEIRLHKHNQRKIWEILDRIT
FT                 GRIKESLDSVILKAFDSDATKTIADNFAYEFNNNIKNVILKCKTPLLDKNL
FT                 YRHATNMSMRFKKAEKKDICKIINNIKTQKSAGVDNIRPLDIKCICTKITQ
FT                 VICKLINTSVHSGSYPDELKIGIVRPIFKKGCKQNYNNYRPITILPVIDKI
FT                 IEKFISNQIHEFYKSNNILACQQFGFQSNKSTTQLLSDLTDYVNASLDKKK
FT                 HVLMVFIDYSKAFDILQHNILIEKLENTGIRGPLLRWCENYLANRAYVVKI
FT                 GTEYSEKVDVTDGTAQGSVLGPLHYLAYVNDLQHVIGNCQLFQYADDTCLV
FT                 AADTDIRTAVENLQCDFNLLCKWSHDIGLVINPQKTKLLHICSSHNRFLGE
FT                 YKIISHDHDCMHRNSMTCNCKAIDQVEEHLYLGLIIDNRFNWDKHIEYICN
FT                 KLRLITAKLYLVKNKLHFKNKLQLYSALMDSIISYGLSSYGRTFRTHLNKI
FT                 YNIQLKTLKMIAPSSVRQKFYHNEHKLFEYCKVLPVQDKVKHILLKENFFY
FT                 NNRNFKEHKILTRSISNNTIETTGANNFYGKRTTNYIIPRLINEIPKILKD
FT                 KITIHNIKYKIKDFFLSNY"
XX
SQ   Sequence 4382 BP; 1796 A; 666 C; 696 G; 1221 T; 3 other;
     attcattcct catctgtcat tcgtagcggt tagacgttca aactcaaacg gtagaagaca        60
     aaaaaggata attatggcaa agtgtacgca ttgctctaaa ttgatagcga aaaagaatcc       120
     kggacttgaa tgtaataagt gtagtgttat agtgcatgct acagcgatat gctcaggact       180
     aacagckaaa caactaaatt ctctgagatc agctgaaaat ttggagtgga cgtgccgtga       240
     ctgctcacaa aaatcacctc gaagaggctc gttcattaca ccacaagaag aagtagagga       300
     cgacgaagaa gtacaacagc aaagctacta tccattcgac atgaaaaaac tacttaacga       360
     tctaacaact gaaataaaca aaataattaa aaaggaacta agggaaacaa acactgctct       420
     ccaatattgc agcgagaaag tagacgaatt tctcgagtgc atggaagctt tcaaggacaa       480
     agtaaaacaa ctagaaaaga aaaccattga tttagaaaat aaatacaaat ctaccgacaa       540
     taaaatttgt gccttagaac aacgtttaaa tgagtacgag caaaaagaat taaataaaaa       600
     tatcgaaata atgggaatac cttatctaga gaacgaaaat ttggaagaaa tatcaaacgc       660
     tatagcgaaa aaattacaca aaaacgtggc agatataaaa aaaatcaagc gggtaccgac       720
     gccacctggg agattaggaa aattaaaatt cgaaatgtat gatgaaatta aaagaaataa       780
     ttggattaaa gaagcaaaaa cgactcaaat ttacgttgac aatatactaa ccacgacagg       840
     caacaaagaa atgcatggac atatttacat aagagaagaa ttaacttact ataacagaac       900
     kcttttatgg aacgctaaac aaatatgtaa agataaattt aaatttgtat ggtgcaagga       960
     agggaaaata ctggtaagaa aatccgaaaa gagtaagatt tttactatta gaagtgatga      1020
     agacctgaag gaactagtga agtaagcaag tgacctttat tcgatatgcc aatatatata      1080
     gtgttgttat taaaatggct tctagtataa catcgaataa cattacagag atatatgact      1140
     gtgtagatat taacgaatat tttaaacatg tctctaaata taactgtaat ttaacttgta      1200
     tccacattaa tataaggtcg cttattaaaa attttgtcta tatagaatta attgtcgcca      1260
     aggctaaaag aaatatagat gttttaatat taagtgaggt aggtataacg gaaaacctca      1320
     gtacactatt ttatttggat ggctacacta tgtatacaca gctacgtaat ggtcgcaaag      1380
     gaggtggtat tattatgtat atttcaaaaa agcataaatt taaattaaac aatcgcgtta      1440
     ctaaatattt cgaatgtatc actgggcaac taacgacacc ctcaaagcga attatgtacc      1500
     tgtgcgctgt gtacagacct ccatcgtata atgcattaca ctttatccgt gaactaggta      1560
     gtatactaat tgctatacca gataaggatc tacttgtttt gggtgacatg aatataaatc      1620
     ttcgctcata caataacatc cgtacgcaat atcttaattt aatgagtgag aatggtcttg      1680
     agtgtgggat ctccgattat actagaatag aagctacaat agactacacg tccaaaactt      1740
     gcatagatca catctttctg agatcgcaca cacaagacgc ggtcagcgcg gcggtcgcaa      1800
     ctgtactggc agatcataga cttacgatca taacctgttt agaaccaagc aatatacagg      1860
     ctgtttctca atataaaata aaatttgata ataacattat acaaaatgaa ttaaaaaacg      1920
     ttaaatggga gagcatatgc aatacggatt gtccgaatac aatttataaa gaattaaaat      1980
     taaaaatatt acaatgttat gaagcgggag aatataaagt aaaaataaaa aattctaaac      2040
     ggaataaaca aaattgggta aactttaagg ttgtaaaagt atgtaaggaa aaagatagta      2100
     aatttaagga atggaaaaat gatattaaca ataggatatt aaaacttgag tatactaaaa      2160
     taagaaacaa atgtaataaa attatacatc agcaaaaaga caaaagtatt caaaatgaaa      2220
     tcagattaca taaacacaat caacgaaaaa tttgggaaat acttgataga ataacaggta      2280
     gaattaaaga atcattagac agtgtaattt taaaggcctt tgatagtgat gctactaaaa      2340
     caattgccga taattttgct tatgagttca ataataatat taagaatgta atcttgaaat      2400
     gcaaaactcc actattagac aagaatttat acagacacgc tacaaatatg tcgatgagat      2460
     ttaagaaagc ggaaaaaaaa gatatatgca aaattataaa taatattaaa acacaaaaat      2520
     ctgccggcgt tgataatata agacctctcg atattaagtg tatttgtaca aaaatcacac      2580
     aagtcatatg taagttaatc aacacaagtg ttcattcggg ctcttaccct gacgaactaa      2640
     aaattggaat tgttaggcca attttcaaaa aaggatgtaa acaaaattat aataattatc      2700
     gccctattac aattctgccc gtaatagata aaataattga aaaatttata tctaatcaaa      2760
     tacacgaatt ctataaaagt aataatatac tagcttgtca acaattcggc ttccaatcca      2820
     ataagagtac gacacaacta ctatctgacc taaccgacta cgttaatgca agcttagata      2880
     agaaaaaaca cgttctaatg gtattcatag actatagtaa agccttcgac atcctgcaac      2940
     ataatatttt gatagaaaaa ttagaaaata caggcattag aggacccttg ctgagatggt      3000
     gtgaaaacta cttagcaaat cgagcatacg tggttaaaat aggtaccgaa tacagcgaaa      3060
     aagtcgatgt tactgatggc acagctcaag gttcggtatt aggccccctt cactatctgg      3120
     catatgtaaa tgacttgcag catgtaatag gtaattgtca actgttccaa tatgcggatg      3180
     acacttgcct cgtagcagca gacacagaca ttaggacagc tgtggaaaat cttcaatgcg      3240
     actttaattt gctctgtaaa tggtcacatg acataggtct agtaataaac ccacaaaaaa      3300
     caaaactgct gcatatatgc tcaagtcaca atagattttt gggcgagtac aaaattatat      3360
     ctcacgacca cgattgtatg catcgtaata gtatgacctg taactgcaag gccattgatc      3420
     aagttgaaga gcatttatat ctagggctta ttatagacaa cagatttaat tgggataagc      3480
     acattgaata tatatgcaat aaactacggc ttattacagc aaaactctat ttagtgaaaa      3540
     acaaacttca cttcaaaaat aaattacaat tatattcagc tttaatggat agtataattt      3600
     catatgggct tagtagctac ggtcgaacat tcagaactca tctcaacaaa atttataata      3660
     ttcaattaaa aacacttaaa atgattgcac catcgtcagt aagacaaaaa ttctaccaca      3720
     atgaacataa acttttcgag tattgcaaag tattaccagt acaagataaa gtaaaacata      3780
     ttttacttaa agaaaatttc ttttataaca acagaaactt caaagaacac aaaatattaa      3840
     cgagatcgat ttcaaataat acaattgaaa caactggagc aaacaatttt tatggtaaaa      3900
     ggacaactaa ctatataatc ccaagactga ttaatgaaat accgaaaatc ctcaaagata      3960
     aaattactat acataatata aaatataaaa taaaagattt tttcttatca aattattaaa      4020
     gtaaaacaat ataaaataaa tatttaagaa atgaaacaaa aaaaaaatat aatatatatt      4080
     ttttcttata ataaaagtaa cacactgtag ctcgacattt aaaacgtacg cgtagttaca      4140
     aatacgcatc tttttccaac ctacctcaca atcacatttt tattttttgt tttgttagta      4200
     attttgttta tgtttgtgtt tgttaaaaat atttgtatct ttgtacagtt tttatgtttt      4260
     ctataactta atgtacttag gaatgtgcag tggtcacaca agccaaatcg ggcttaagac      4320
     cgcgaagaat aattaatttt aatgtacttt gttataaata aataaaataa aaaaaaaaaa      4380
     aa                                                                     4382
//
ID   CR1-90_AAe  repbase;    DNA;    INV; 5095 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-90_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5095
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1178-1178 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           407..1489
FT                 /product="CR1-90_AAe_1p"
FT                 /translation="MDACHVCSGPLDSARAINCSGSCGRIFHFVCVGMTKS
FT                 QFSSWLAKIGLFWFCDSCRLNFVPAIHDREKIIMKALRELIIRTDSMDTRL
FT                 GNYGENLRKINKTLLESHQQAKSNNSPHTFVQRINEMNFDDSIDDPINRSR
FT                 SCEDTSFFEVLDEVNSTIALLPEKFVVGSNKRVQIVTNPSSESSSRNIPRN
FT                 DISSPATPDRQMNQATKRKSPASNLSHRTVNRTESSGDRIVFANNGANSTA
FT                 LPSSLKRPNSISLKVANDMQVSNDLESFYVTPFTPDQNEEEVKQYVIEISN
FT                 AQPSMVKVTKLVPRGKNAEDLSFVSFKVSVCKTVSSVVGDPWYWPEGITVR
FT                 TFEPTTKNGSAARLPVSK"
FT   CDS           1444..4881
FT                 /product="CR1-90_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="THYKKRXSCTSSCLQVKSHAASGHITFPVLPGKPKNG
FT                 ICPAEALIDAAPKLNEGSFLQYHTTNRPHTSTDLLIDDNDDHFANHLAALP
FT                 VSSGNLSMDICLAEAEQDAAPFLNEGLLLQFDVVQSVPDSPTCHLAALPVS
FT                 PGELKSGICLAEAVKDSTRKLNGGLHFQRDDISAAITSEPTSSCDDRVLLF
FT                 YFQNVGGMNTTLAKYLLACSDAXYDVIALVETWLSDNTLSQQIFGPTYSVF
FT                 RCDRSVSNSVKLSGGGVVLAINSRYRSRIICPPTGNIVEQVWVAVTFMDWT
FT                 LYICVVYFPPDRINDPVLINAHLESISWVFNEMNINDNIMVLGDFNIPTVK
FT                 WKRNGSGFFHPDSCQSSISNISCELLDGYSTAGLVQINGVVNSNGRLLDLA
FT                 FASKELLTIVGIAEAPAPLVKYCQHHPPLQLTIQASIRSSNDIVEDFFYDY
FT                 NNANYECMNRLLCNINWNALLPNRDVNDAAVVFSNIMLYSIDQYVPKKIVK
FT                 GPKHPAWSNSKLRKLKSKKRRALRDYTRHRTLLNKRRYVTINNNYKRMNEK
FT                 LYLIHQTEIQRKLKANPKSFWQHVNEQRKDSGIPSTMVLDDVEASSIEDIA
FT                 ELFRVHFCSVFVDEQLSDEEVFMAASNISQRLAFDQMPEVSCQLVETIGNN
FT                 LKISTNPGPDGIPSIVLRKCISSIAQPLAQIFNMSLKNGVFPCNWKESFVF
FT                 PVFKKGNKRVVSNYRGIASQSAASKLFEKLVLEYMMHNCSGLISEDQHGFT
FT                 PKRSTLTSLVLYTNSIIRQIESGHQTDAIYTDFSAAFDKINHQIIVAKLAR
FT                 LGFSGTILKWLESYLLDRSMSVKIGIYNSSAFKVTSGVPQGSHLGPFIFLL
FT                 YLNDVNLRLKCFKLSFADDFKLYSTVKRAADAAFLQDQLNEFSDWCDINRM
FT                 ILNPEKCCVITFTRKRQPILHEYSLKRIVLKRESVVKDLGILLDSKMTFKD
FT                 HISYVTAKASAQLGFIFRVAKSFRDVHCLKSLYCCLVRSILEYGSVVWSPF
FT                 YQNGIQRVETVQRKFVRYALRFLPWNDPYNLPSYENRCKLIDLDLLEMRRN
FT                 VSKATFISDLLSSRIDCPSLLSQLKINIRSRTMRSNDFIRLPFSRTNYCYH
FT                 APLTSMCRIFNKCYSVFDFHLSRTTIKKYFMQILSLFT"
XX
SQ   Sequence 5095 BP; 1463 A; 1072 C; 1045 G; 1510 T; 5 other;
     tggcatcact gacaatgtat gctgtttgaa gttcttcggt gctctagttt gattatgttt        60
     tcgttggatt actcgttttg aaaaataccg tgaaccgttg gtttcgtcgg ctaagaatag       120
     ttcgtacctg atttaagtgc atattctcgt cattcatcga tgtacttgtg gtttttgtgt       180
     ctttatacga actttgttta cccactattg cacctctgat cgcgcgattt tttttttttc       240
     tgaagcgcca tctgccagaa tacatcagat cactactaag caggaacaag tcggcaacat       300
     aagttgaaag caaccgctca atcaattgta tacgatcggt cagtgcacgt agtctaccta       360
     aaggagctat ttgtwttgcc caacaacgat ttggattttc gtgagaatgg atgcatgtca       420
     tgtttgctct ggcccattgg attctgcgag ggcgattaat tgcagtggat catgcggccg       480
     aatatttcat ttcgtttgcg tgggaatgac gaaatcccaa ttctcatcgt ggttagccaa       540
     aattggttta ttttggttct gcgactcgtg tcgtttgaat ttcgtaccag caatccatga       600
     tcgagaaaaa atcattatga aagctttacg tgagctcatt attagaaccg attcgatgga       660
     cacacgacta gggaattatg gcgaaaatct caggaagatc aataaaacgc tacttgaatc       720
     gcaccaacag gcgaaatcaa acaattcgcc tcatactttt gtgcaaagga ttaatgagat       780
     gaatttcgac gattctatcg atgaccctat caaccgatca agatcgtgtg aagatacttc       840
     gtttttcgaa gttctcgatg aagtaaatag cacgattgca ctccttccgg aaaaattcgt       900
     tgtagggtct aacaagcgag tgcaaatagt aacgaatccg tcgtctgaat caagcagcag       960
     aaatattcct cgaaacgata tctcctctcc tgccaccccc gatagacaaa tgaatcaggc      1020
     aaccaaaagg aagtcaccag ctagtaattt atcccacaga accgtaaatc gcaccgagtc      1080
     cagtggcgat agaattgtat tcgctaacaa cggagctaac tcaactgctc ttccaagtag      1140
     cttgaagcgg ccgaattcaa tatcgctgaa agttgctaac gatatgcagg tttctaatga      1200
     cttggagtca ttttacgtaa caccctttac acccgatcaa aacgaggaag aagtgaaaca      1260
     atatgtgatc gagatttcca atgctcagcc ttcgatggta aaagtgacca agctagtgcc      1320
     acgaggaaag aacgctgagg acctttcctt tgtatcgttc aaagtgtcgg tttgcaaaac      1380
     tgtttcgagc gtagtaggtg acccatggta ttggccggaa ggaatcactg ttcgcacatt      1440
     tgaacccact acaaaaaacg gwtcagctgc acgtcttcct gtctccaagt aaaaagtcac      1500
     gcagcatcgg gacacattac gttccctgta ttaccaggta agcccaagaa cggtatatgt      1560
     cccgccgaag ccttaataga tgctgcacca aaattgaatg aaggttcgtt tttgcagtac      1620
     cacaccacca accgaccaca cacttcgacc gatttgttga tagatgacaa tgatgaccac      1680
     tttgcaaacc acttggctgc acttcctgtt tcctcaggta atttaagcat ggatatatgt      1740
     cttgccgaag ccgaacaaga tgctgcacca tttttgaatg aaggcctact tttgcagttt      1800
     gatgttgttc agtctgttcc cgactctccg acatgccact tggccgcact tcctgtttct      1860
     ccaggtgagt tgaagagtgg tatatgtctt gccgaagccg tgaaagattc tacacgtaaa      1920
     ttgaatggag gtttacattt tcagcgcgat gacatctccg ctgcaatcac cagtgaaccc      1980
     actagctcct gtgatgatcg agtgctgcta ttttatttcc aaaatgttgg aggaatgaat      2040
     acgacactgg ccaagtacct gttagcctgc agtgacgcca sttatgatgt gatcgccttg      2100
     gttgaaacct ggctcagcga caatactctg tctcagcaaa tcttcgggcc cacmtattca      2160
     gtattccgct gcgaccgttc tgtatccaac agcgttaaac tttctggggg tggagtagtt      2220
     ttggcgatta attcacgtta cagatctcgt attatttgtc ctccgactgg taacatcgtc      2280
     gagcaagtat gggtggcggt cacattcatg gattggacgt tatatatatg tgtagtgtac      2340
     tttccacctg atcgtatcaa cgatccagta cttattaacg cccatctaga atccatctca      2400
     tgggtattca atgaaatgaa cattaacgac aacatcatgg tacttggcga tttcaatatt      2460
     cctaccgtga aatggaaacg aaacggttct ggcttcttcc atccggattc ttgtcaatct      2520
     tctatcagca atatttcctg cgagctgctg gatgggtaca gtaccgccgg attagttcaa      2580
     attaatggag tggtcaacag taacggccga ctgttggatc tagcatttgc gagtaaagag      2640
     ttactaacca ttgttggcat agctgaagct ccggcacctt tagtgaaata ctgccaacat      2700
     catcctcctc tgcagctcac tattcaagcg tcgattcgaa gttcgaacga catagtcgag      2760
     gatttttttt atgactacaa caatgcaaac tatgagtgta tgaatcgatt gttatgcaat      2820
     atcaactgga atgctcttct acccaatcga gatgttaatg acgcagcggt tgtattctcc      2880
     aatatcatgc tgtactctat tgatcagtac gttccaaaga agatcgtgaa aggtccgaag      2940
     catccagcat ggtccaattc aaagttgaga aagctgaaaa gcaaaaaacg acgtgcccta      3000
     agagattata cgagacaccg cactttgttg aacaaacgac gatacgttac gattaacaac      3060
     aactataagc gtatgaatga aaaactctac ttaatccacc aaactgaaat tcaacgtaaa      3120
     ttgaaagcta accctaagag cttctggcag catgtaaatg aacagcgtaa ggattcgggc      3180
     attccttcta ccatggtgtt agacgatgtt gaggcatcat caattgaaga tattgcagaa      3240
     ctttttcgcg tgcatttctg tagcgtattc gtcgatgaac agctatcgga tgaagaagtt      3300
     ttcatggctg cttctaatat ctcgcagcga ttagcttttg accaaatgcc agaagtttct      3360
     tgtcaacttg tcgaaacgat cggtaataat ttgaaaatct ctacgaatcc tggtcctgat      3420
     ggtataccgt ctatcgtgct cagaaaatgc atatcctcaa tcgcacagcc attagcgcaa      3480
     attttcaaca tgtctctaaa gaatggtgtt tttccatgta attggaagga atccttcgtt      3540
     ttcccggttt tcaaaaaagg gaataaacgg gtcgtttcaa actatcgagg aattgcatct      3600
     cagagcgcag cttcgaaact gtttgaaaag cttgtcctgg agtacatgat gcataattgt      3660
     tcaggtttaa tttccgagga tcaacatgga tttaccccga aaagatcaac gttgaccagc      3720
     ctggttcttt acaccaactc aattatccgc caaatagaaa gtggccacca gaccgacgct      3780
     atttacaccg atttctcagc ggcgttcgac aaaataaatc accagatcat agttgcaaaa      3840
     cttgcccgtc tcggatttag cggaactatt ctcaagtggc tggaatcata tctcctcgac      3900
     cgttctatgt ctgtgaaaat cggcatttac aactcatctg cgtttaaagt aacttcgggt      3960
     gttccgcaag ggagtcatct aggaccgttc atattcctgc tataccttaa cgatgtgaac      4020
     cttcgtctta aatgctttaa actttcattt gccgatgatt tcaaactgta ttccaccgta      4080
     aaaagagcag cagatgcagc cttccttcag gatcaactca acgaattctc cgactggtgc      4140
     gatattaacc gaatgattct gaaccccgag aaatgttgtg taataacatt tacacgcaaa      4200
     cgtcaaccaa ttctgcatga atacagccta aagaggatcg tcctgaagag ggaatcggtt      4260
     gttaaggatt tgggaatatt attggattca aaaatgactt ttaaagacca catatcatat      4320
     gttacagcaa aggcatcagc tcaattaggt tttattttcc gggtggctaa gtcgttccga      4380
     gatgttcatt gtttgaagtc cctgtattgt tgtttagtgc gctcaattct tgaatatgga      4440
     tcggttgttt ggtctccgtt ttaccagaat ggaattcaga gggttgagac cgtgcaaagg      4500
     aaatttgtta gatatgcgtt aagattttta ccgtggaatg atccttacaa tctccctagc      4560
     tatgaaaatc gatgtaaact aattgatctt gatttgctcg aaatgcgccg aaatgtatca      4620
     aaagcaacct ttatctcgga tttacttagt tccagaattg actgccccag tttactgagt      4680
     caacttaaaa ttaatatacg gagtcgaacc atgcgtagta atgatttcat acgtttaccg      4740
     ttctcgagaa ctaactattg ttaccatgca ccattaacta gtatgtgtcg tatttttaat      4800
     aagtgttaca gtgtgtttga ttttcatttg tctaggacta caattaagaa gtattttatg      4860
     caaattttgt ctctcttcac gtgatagatt ttaagaattt tatttgataa stttatattt      4920
     tttgttatat gtgtattgta aagctgattg tatcattggg aatgtaattc tgttgatgcg      4980
     aaaagatgag gaggttttgc gcccgtttga gagagagcaa tagtaaaaac cgctcaactc      5040
     aaacaggctt ttccctgctc caaataaata aataaataaa taaataaata aataa           5095
//
ID   CR1-91_AAe  repbase;    DNA;    INV; 4894 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-91_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4894
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1179-1179 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..916
FT                 /product="CR1-91_AAe_1p"
FT                 /translation="MSLVCYSCAIEIGDVQVECQGFCNAIFHPRCCGIRAD
FT                 VYEEVMRNHQVFWFCPSCTTLMKKVRFRNTARAAYEAGQSQAINSHSDTMQ
FT                 NLKSEIMEAEIRTTFAKLINSSSCTPXSSKRVGIDARFTRSRRLFSTVRDX
FT                 KSNQQPPLLHGTGSTLSPSNEIATVPPVQPKFWLYLSRIAKDVSTDQICAF
FT                 AKKRLGSEDIQVTRLVAKGRXISTLSFVSFKIGMDIELKPKALSSSSWPKG
FT                 ILYREFTDKSSENFWRPTLTTPSDDPLNLPTEEVVIME"
FT   CDS           1061..4744
FT                 /product="CR1-91_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGSSAPLPRASTIMFPNTSPPEPYAAFSRPISSRPHA
FT                 TSDIYIPGRTLATSMKEPPIPLIAVEPIPPASYSRPGPALELENGVFRTPT
FT                 TGKYVVFTNFPSPESITIPSDYSSIRLPTRTLGRKTVISSKIAPTVLNAVK
FT                 PLLCPAINSHAETEDAVLSSSTKKRHESNLSNRPRSTHVDHSPGRILAASI
FT                 EETPISLSTVEPFLPATSSRPGPVPESGDGAFRKPLLGKYSEFVEFSAPES
FT                 NSISSESTLAQRQYNVSQQEQRSKADKLLLYYQNVGGMNSTIEDYRLAVAD
FT                 NCYDVIALTETWLDSRTLSNQVFGHDYEVFRCDRNPNNSKKSVGGGVAIAV
FT                 NKKLKCRPIESETWKCVEQTWVAINLGECVVYLCVVYLPPDRIRDISMIDA
FT                 HTQSIWHVMSEMSATDEIIVLGDFNLPGIAWKASHSGFLYPDPERSVIHPN
FT                 AMNLLDSYSTATLKQICDVINENSRTLDLCFVSVQDAAPIVSIAPAPLVKF
FT                 VPHHRPIILTLNQRLSSSVKIHKSQVYYDFKNTDDEGMANFLLTIDWDVCL
FT                 DRNDIQSAAQTFSNIMLYAIDRYVPKKVIRCEKQPWQSNELKRLKTAKRAA
FT                 LKKYTKRRNQSSKTNYVRLNNKYKRVSKRCYLNYQNKVQRNLKHRPKSFWK
FT                 YVNEQRKESDLPSSLELNGETACKVDDICRLFAVKFSSVFADEQLSTERIS
FT                 LAARNVPMQEQSLAVFTVDDTMIIRAARQLKSTCKPGPDGIPAILLKNNIS
FT                 CLLSPLRHLFQTSLANGVFPYCWKFAHMYPVYKKGRRYDINNYRGITSLCA
FT                 VSKLFELVVMEPLFSHCKHYLSEEQHGFMPGRSTTTNLLCLSSHITTSLAE
FT                 RNQTDVIYTDLSAAFDKINHAIMIAKFQKLGLHGSFLRWIDSYLTDRRMLV
FT                 SIGDSQSDVFVGTSGIPQGSHLGPLFFSIYFNDVNHVLKGPKLSFADDLKI
FT                 FQQIRTTADAITLQNELDRFAWWCDLNRMLVNPNKCSVISFSRKKEPVRFK
FT                 YTFSDVEICRVNHVKDLGVIMDSQFTFKQHVAYVVDKASRTLGFIMRLCKN
FT                 FNDVHCLKSLYCSLVRPILEFSSPVWSPIYLNGAERIESVQRRFIRFALRR
FT                 LPWRDPYRLPSYESRCLLIDIETLRTRRDISKAMFAADVLQNRIDCPAILH
FT                 EIDLNVQPRALRNNLMLRPPLRRTNYGMNTAIDGIQRTFNRVSSKFDYHMP
FT                 RTTLRRLFSDVLTEVREI"
XX
SQ   Sequence 4894 BP; 1394 A; 1218 C; 1013 G; 1266 T; 3 other;
     tgctgtttga tcatcgcgac tgtgggctgg ttttgcaaat cattttcgag cgtaacttgt        60
     gttaagagcc ggagaaaaaa tgtctctcgt atgttactca tgtgctatcg aaattggtga       120
     tgtacaagtc gagtgtcaag gcttctgtaa tgcaattttt catccccgtt gctgtggaat       180
     ccgtgcggat gtgtatgaag aagtgatgag aaatcatcaa gtgttttggt tttgcccgtc       240
     atgtaccacg ctaatgaaaa aagtgcgttt cagaaataca gcccgcgccg cttacgaagc       300
     gggtcaaagt caagctatca attctcatag tgacactatg cagaatctaa aatctgagat       360
     tatggaagct gaaatccgaa ccactttcgc taaactgatc aactcaagct cgtgcacacc       420
     aawatcctcg aaacgtgttg gcattgatgc aaggttcaca agaagtcgaa gattattcag       480
     cacagtaagg gacamtaaat caaaccaaca gccaccactc ttacatggaa ccggtagcac       540
     actctcgccg tcgaatgaaa ttgcaactgt tccaccggtt caaccgaaat tctggttata       600
     cttgtcgcgg atcgcaaaag acgtttcaac cgatcaaatc tgtgctttcg ccaaaaaacg       660
     cctcggatca gaagatatac aagtcacgag actagttgcc aaaggaaggg wcataagtac       720
     attgtctttt gtttccttca aaattggtat ggatattgaa ttgaaaccca aagcactctc       780
     atcctcttca tggccgaaag gcattctcta ccgagagttc actgacaaat ccagtgaaaa       840
     tttttggcga ccaacactaa caaccccatc cgacgatccg ttaaacctgc ctacggaaga       900
     agttgtaata atggagtaac caatcatcta atccatcttc gctgcacatc gggacgcaaa       960
     ttcttcgcgg gcactaagga agtccctatc cctctcatcg cagtcgagcc cctcctgcca      1020
     gcgaccatca gtcgtcccgg tcctgcgttt gagttgggag atgggatctt ccgcacccct      1080
     accacgggca agtacaatta tgtttccgaa cacttcacct cctgaaccat atgccgcttt      1140
     cagtcgaccc atatccagcc ggccacatgc aacctctgac atttacatcc cgggacgcac      1200
     gcttgccaca agtatgaagg aaccccctat tcctctcatc gcagtcgagc ccatcccgcc      1260
     agcgtcctac agtcgtcccg gtcctgcgct tgagttggaa aacggggtgt tccgaacccc      1320
     aactacaggc aagtacgttg ttttcacgaa ctttccgtcc cctgaatcga ttactattcc      1380
     cagcgattat tcatcgataa ggctgccgac tcggactctt ggtcgcaaaa ccgtcatcag      1440
     ctccaagata gcccctactg ttctcaacgc agtcaagcct ctcctatgcc ccgcgatcaa      1500
     cagccatgct gaaacggaag acgcggttct cagttcttct acaaaaaaac gacatgagtc      1560
     aaacctgtca aatcggcctc gctcaaccca cgtagaccac tcaccgggac gcattcttgc      1620
     cgccagtatt gaggaaaccc ctatctcact cagcacagtc gagccattcc tgccagcgac      1680
     cagcagtcgt cccggtcctg tgcctgagtc gggagacggg gctttccgaa aaccgctcct      1740
     aggcaagtac agtgaatttg tggaattttc tgcacctgaa agtaactcca tttccagcga      1800
     atccacgtta gcccaacgac agtataacgt ttcgcaacag gaacaaagga gcaaagccga      1860
     taaactccta ctctactacc agaacgtcgg cggcatgaac tcgactattg aagactacag      1920
     attagctgtt gcagacaact gctacgacgt tatcgctctt accgaaacat ggctcgactc      1980
     acggacatta tctaaccagg tatttgggca cgattacgaa gtttttcgct gtgatcgtaa      2040
     tcccaacaat agtaagaaat ccgtcggtgg aggcgtagcc atcgctgtaa acaagaagct      2100
     gaaatgcaga cctattgaga gtgaaacatg gaaatgcgtc gagcagacat gggttgccat      2160
     caacctcggt gaatgcgtcg tttatctgtg cgtcgtttac ctccctcctg atcgtatacg      2220
     cgatatctct atgatcgatg ctcatactca atcaatctgg catgttatgt ctgaaatgtc      2280
     tgcaactgat gagattattg tgctgggaga cttcaactta ccaggaatag cgtggaaggc      2340
     gtcccatagt ggtttcttgt atcctgaccc ggagcgatca gtgattcatc caaatgccat      2400
     gaatttactt gacagctaca gtacagcgac cctgaagcaa atttgtgatg taatcaacga      2460
     aaacagccgc actttagatc tctgctttgt gagcgtccaa gacgcagctc caatagtgtc      2520
     cattgctcct gctcctctcg ttaaatttgt tcctcatcat agacctataa ttttaacgct      2580
     taatcaacgg ctcagcagtt cagtaaaaat ccacaaatca caagtatact acgattttaa      2640
     aaacaccgat gacgaaggaa tggccaactt tctcctgacc atagattggg acgtttgtct      2700
     cgaccgtaac gacattcaat ctgcggccca aacgttttcc aatataatgc tgtacgctat      2760
     tgacagatac gtcccaaaaa aagtgatacg ttgcgagaaa caaccatggc agtcaaacga      2820
     acttaaacga ctgaaaacag cgaaaagagc agcattgaag aagtacacga aacgtcgcaa      2880
     ccaatcttcc aaaactaatt acgtgcggct caacaataaa tacaagagag tcagtaaacg      2940
     ttgttatcta aactatcaga ataaggtaca aaggaatctg aaacatcgac caaaatcgtt      3000
     ctggaagtat gtgaacgagc aacgcaaaga atctgacctt ccatcgtcgc tagaactgaa      3060
     tggtgaaaca gcatgcaaag ttgacgatat ctgtcgactg tttgccgtta aattctcaag      3120
     cgttttcgcc gacgaacaac tatcaacaga acgaatttcg ctcgccgcaa gaaacgttcc      3180
     aatgcaagaa cagtcactcg cagttttcac cgtggacgac accatgatca tccgagcagc      3240
     acgtcaactg aagtctacat gtaaacctgg gcctgatgga ataccggcga ttcttctgaa      3300
     aaataacatc agctgtttgt tgtctcctct tcgccacttg ttccagacat cgctagcgaa      3360
     cggcgtcttt ccatattgct ggaaattcgc tcatatgtac ccagtgtaca agaaaggtcg      3420
     ccgatatgat atcaacaact accgtggtat aacatcatta tgcgcagtat caaaattgtt      3480
     cgaacttgtc gttatggagc cacttttttc tcattgtaaa cactatttga gcgaagaaca      3540
     acacggtttt atgcctggcc gatcgacaac cacaaatttg ttgtgtcttt cgtcccatat      3600
     cactacaagt ttggcagaac gaaatcaaac agacgttatc tacaccgacc tatccgccgc      3660
     tttcgacaag ataaaccacg ctataatgat cgctaagttt cagaagcttg gattacacgg      3720
     ttcgtttctg agatggattg actcctatct caccgatcga cggatgctcg tatccatagg      3780
     ggattctcag tcggatgttt tcgtaggaac ttctggaatt ccacaaggaa gccatctcgg      3840
     acctctattt ttctcgatat acttcaatga cgtgaaccat gtgttgaaag ggcctaagct      3900
     ctcgttcgca gacgacctga aaatatttca gcaaatccgc acgaccgccg atgcaattac      3960
     gctgcaaaat gagttagatc gtttcgcatg gtggtgcgat ctaaaccgga tgctagtgaa      4020
     cccaaacaag tgctcggtga tttctttctc caggaaaaaa gagcctgttc gtttcaagta      4080
     caccttttct gatgtggaga tatgccgggt taaccatgtg aaagatttag gagtaatcat      4140
     ggattcccag tttaccttca aacagcatgt agcgtacgtc gtcgataagg catcgagaac      4200
     attaggcttc attatgcgat tatgtaaaaa ttttaacgat gttcactgtt tgaaatcgct      4260
     gtactgttcg ttagtgcgtc ctattcttga attcagttca cctgtatgga gtccaattta      4320
     ccttaatggt gcggaacgca tcgaatcggt tcaacggagg ttcattcgat tcgcactacg      4380
     cagattacca tggcgagatc cttatcgttt gccgagctat gaaagccgtt gcttgttgat      4440
     cgacatcgag acccttcgaa cacgaagaga catctcgaaa gcgatgttcg ccgccgacgt      4500
     tctacaaaac agaatagact gtccagcgat tctccacgaa attgacctca acgttcaacc      4560
     tcgagcactt cggaataatt taatgctacg acctccattg cgcagaacga actacgggat      4620
     gaacaccgct atcgatggaa ttcaaaggac ttttaaccgt gtctcatcta agttcgatta      4680
     ccacatgccc cggactacac tacgccgcct attctcagat gttctgactg aagtcagaga      4740
     aatttagtaa atcatgctct ctgtttatcg ttacgttcat tttaattgtt gacaagcaat      4800
     gtatgtttct tttaagtatt ttaatattag ggcagaacca ttggggccac tgtcggcctg      4860
     ttggtatatc taaataaata aataaataaa taaa                                  4894
//
ID   CR1-92_AAe  repbase;    DNA;    INV; 5010 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-92_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5010
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1180-1180 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..1006
FT                 /product="CR1-92_AAe_1p"
FT                 /translation="MLPTFWRYSSLRCTLHRLIFFCCVLRIPITKMSEICH
FT                 SCTNEIHEDRVTCGGFCTAVFHLKCCRLPSGLLDEINRNKQIFWMCNACAV
FT                 IMSDVRHKKNVKAAYEAGLEKQLSSHTEILGNLKQQILDELKIEIRSSFSK
FT                 MSNIAFTTPITSRRSSNVPRTIGSRRLFAKKDNNVPTLIHATGESESPSLG
FT                 RLTVQQPTKKFWIYLSRISREVTPEQIAELTKRRLSTENIEVVRLVAKNKD
FT                 IRTMSFISYKVGVEMELKSVALSSSTWPKGMLFREFIDDRKSENFWRPQTN
FT                 FLHTTPNSVNSDDQSPMIE"
FT   CDS           901..4734
FT                 /product="CR1-92_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="IYRRSQIGKFLAASNEFSAHYTEFGQFRRSIPNDRMM
FT                 LLSPSPQTLQTSGRKLALSRLEVLDPLSTVELFQPAIVSRPDPVFESGDRI
FT                 FQTQIQGKYHDVLNKSVPEMPTSFSQPPINDSCMIDIIRKPGRTYAASIME
FT                 APHPLAAVVPFQPATSSRSGPACESGDGVFQNSTSGKYDKAPDSSLPKIYD
FT                 AYSRSSSQSLQTASSKLTPGRTLASVIMEASNPLITVPSLLPATIRRPGPV
FT                 FELSDGGFQTPSIGKYNRIKATPPSERKLSFSAPSSLPVSRQLWSNYDSSS
FT                 NLRSSTAVTIGETAEILSEEFRSAPENLPTSSQHDLRVFYQNVRGLRTKID
FT                 SFHLAVADSEYDVIVLTETWLDDSILSTQLFNGSFSVFRTDRSPLNSRKSR
FT                 GGGVLIAVSSHLCCHVDPAPVSQSLEQLWVKIKLQTHSLSVGVLYLPPDRR
FT                 SDISLIQQHVDSIGCVLAGLSPGDGAILLGDYNHPEMRWISSDNGGLKIDI
FT                 HNTRLTTAGSSLYDAFCFHGLTQINHIENSNSRTLDLILVNETLLPLSRVI
FT                 EAVEPLVMTDISHPAIEVTLSVPSPQRFVQWNDNNRFDFRRADFNALTDAL
FT                 HALDWQFLESEVNLDSMVETFNSQMQMVIQTHVPRQQPPLKPPWTTNRLRK
FT                 LKRLRRSALKKYSRNRSDLTKHRFVLASNEYIRHNRFLYDCYIDRTQRNLK
FT                 SNPKQFWSFVRSKRKEEGLPSNMFFGESTANTALGQCELFAEHFKSAFSHV
FT                 TVSATQLIEAARDVPANSFDFQIFEITEEHILNALSKLKNSYSPGPDGIPS
FT                 SFLKKCSAALMTPLLKIFNLSLQRGNFPAGWKVSYLTPIHKRGDKCNVANY
FT                 RGITSLSACSKLLEIIMNNALFETCKNYISSAQHGFYPKRSVTTNLVEFTS
FT                 LCTRSMDAGLQVDAVYTDFKAAFDRVNHEILLYKLERMGVSITVVRWLKSY
FT                 LADRSVRVRIGSTYSETFSILSGVPQGSNLGPLLFSLYINDMSRVIPRGTR
FT                 LLFADDVKLFMIIASLDDCQVLQQNLNTFEDWSTRNCLELCVTKCCTISFS
FT                 RRQNPMRYDYCLCGHILERKDEVKDLGVILDRHMTFRPHFDDVIAKANKQL
FT                 GFIFRIACGFDDPHCFKSLYCALVRSILESSVLVWCPYSRNWIDRFEAIQR
FT                 KFVRLALRNLPWQDALNLPPYEHRCMLLGIDTLEKRRHSMQAEFISKVLNS
FT                 EIDAPAILAELQLYVPERPLRRRNFLHLPSRNSRYGQHDALRFMALRYNET
FT                 AEHYDFYMSDQNIPLIS"
XX
SQ   Sequence 5010 BP; 1374 A; 1141 C; 1030 G; 1465 T; 0 other;
     ccacacacgt tccttttctc catcgaagcg tcatctgcct gcaaaaattg aaagctacct        60
     gcctgtacat cgtatgctgc ctactttttg gcgatattcg tctttgcgct gtacgctaca       120
     tagattgatt tttttctgtt gcgtattgcg tatcccgatt acaaaaatga gtgaaatctg       180
     ccactcttgc actaatgaaa tccatgaaga tcgtgttacg tgcggaggat tttgtactgc       240
     cgtatttcat ttgaaatgtt gccgcctacc aagtggatta ctggacgaaa tcaatcgaaa       300
     caagcagata ttttggatgt gtaacgcttg tgctgtcatc atgtcggatg ttcggcataa       360
     gaaaaacgtt aaggcggctt acgaagccgg gttggagaag cagctaagtt cccatacaga       420
     gattcttggg aacttaaaac aacaaattct tgatgaattg aaaattgaaa tccgatccag       480
     cttctccaaa atgtcaaata ttgctttcac tacaccgatt acttcaagac gctccagtaa       540
     tgtgccacgc accatcggaa gtcgacggtt gtttgcgaag aaggacaata atgtgccaac       600
     tttaattcac gctactggag aatccgaatc tccaagtcta ggtcgattga ctgtccaaca       660
     accgacaaaa aagttttgga tttacctttc acgaatttct cgagaagtta ctccagaaca       720
     aatcgctgag ctcaccaaaa ggcgtttatc tactgagaac atcgaagttg tccgtttggt       780
     tgcaaaaaac aaagatattc gcactatgtc gttcatatct tacaaagtgg gcgttgaaat       840
     ggaactgaaa tctgtggctc tctcttcgtc cacttggcca aaagggatgc tatttcgtga       900
     atttatcgac gatcgcaaat cggaaaattt ttggcggcct caaacgaatt ttctgcacac       960
     tacaccgaat tcggtcaatt cagacgatca atccccaatg atagaatgat gcttttatcc      1020
     ccgtctccac aaacgcttca gacatcggga cgcaaacttg ccttaagccg cttggaagtc      1080
     ctggatcctc tcagcacagt cgagttattc cagccagcga tcgtcagtcg tcccgatcct      1140
     gtgtttgagt ccggtgatag gatcttccaa acccaaatcc aaggcaagta tcatgatgta      1200
     ttgaacaaat ccgttcctga aatgcctacc agttttagcc aacctcccat caatgattcc      1260
     tgcatgattg acataattcg gaaaccggga cgcacgtatg ccgcaagtat tatggaagcc      1320
     cctcatcccc tcgccgcagt cgtgcccttc cagccagcga catccagccg ttccggtcct      1380
     gcgtgtgagt caggtgacgg ggtcttccaa aactcaactt caggcaagta cgataaggct      1440
     ccggacagtt ctctccctaa aatctacgat gcttacagcc gatcctcatc acaatcattg      1500
     caaactgcct cttcaaaatt aacaccggga cgcactcttg cctctgtaat tatggaagcc      1560
     tccaatccac tcatcacagt cccgtctctc ctgccagcga ccatcagacg tcccggtcct      1620
     gtgtttgagc taagtgatgg gggcttccaa actccatcaa tcggcaagta caatcgtata      1680
     aaagcaactc ctccatctga aagaaaatta agtttcagtg cgccctcttc actacccgtg      1740
     tctcgccagc tctggtctaa ttatgacagt agcagcaatc ttcgttcatc aactgccgtc      1800
     actatcggtg aaacagccga aattctgtcc gaggagttcc gctctgcgcc agagaatttg      1860
     ccgactagtt ctcaacacga tttacgtgta ttttatcaga atgttagagg gctacgtacg      1920
     aaaattgact cttttcacct ggcagtagct gattcagagt atgacgtaat tgttctcacc      1980
     gagacgtggc ttgatgatag catattatca actcagttgt tcaacggttc attttccgta      2040
     tttagaactg atcgcagtcc tctaaacagt agaaaatccc gaggaggtgg agtactaata      2100
     gccgtttcct cacacttgtg ttgtcatgtt gacccggcac ctgttagcca gtcgttggag      2160
     caattatggg ttaaaattaa gctgcaaaca cactctctaa gtgttggtgt actttatctg      2220
     ccaccggatc gaaggagcga tataagtcta attcagcaac atgttgactc tattggatgc      2280
     gttttagccg gtttgagtcc cggtgatggt gctatccttt tgggtgatta taaccatcct      2340
     gaaatgcgtt ggatttcatc ggataatggt ggtctcaaga ttgatattca caacacgcga      2400
     ttaacaacag caggtagtag tttgtacgac gcattctgtt tccatggttt aacgcagatc      2460
     aaccatatcg agaactctaa ctccagaact ctcgacttaa ttctggtaaa tgaaacgtta      2520
     ttgccgcttt ctcgtgtaat tgaggctgtt gaaccacttg tcatgacgga catttcccat      2580
     cctgccatcg aagtgacact ttccgtccct tcgcctcagc gcttcgtaca atggaacgac      2640
     aataatcggt tcgattttcg tcgagcagat ttcaatgcac taactgatgc tctccatgct      2700
     ttggactggc aattcttgga atcggaagta aatctagaca gtatggtaga aactttcaac      2760
     agtcagatgc aaatggttat tcaaacacat gttccaagac agcagccacc attgaagcca      2820
     ccgtggacaa cgaatcgcct acgtaaactg aagcgcctta gacggtcggc tttgaagaaa      2880
     tatagccgta atcgctctga tcttacaaaa caccgttttg tgcttgccag caacgaatat      2940
     attaggcata atcgctttct gtatgactgc tacattgacc gtacgcagag aaatctgaaa      3000
     tccaatccta aacagttttg gtcatttgta cgatctaagc gtaaagaaga aggactgcca      3060
     tctaacatgt ttttcggaga gtctacggcg aatacagctt tgggacaatg tgagttattc      3120
     gcggagcatt ttaaaagtgc attctcacat gttacggtat ctgcaacgca gttaattgaa      3180
     gccgcacgtg atgttcctgc aaacagtttc gattttcaga tcttcgaaat aaccgaggag      3240
     cacatcctca atgctctcag taaactcaaa aactcgtatt cacctggtcc ggatgggatt      3300
     ccgtcgtcct ttctgaaaaa atgctccgct gctttgatga cgccattact caaaatcttt      3360
     aatttgtcgc tgcaacgagg aaattttcct gctggatgga aagtatcgta ccttacacct      3420
     attcacaaga gaggtgataa atgcaatgtt gccaactacc gtgggatcac atccttaagt      3480
     gcatgttcga agctgctcga aattattatg aataatgctc tttttgaaac ctgcaagaat      3540
     tatattagta gtgctcaaca tggcttctat cctaaacgat cagttacaac caacctcgtc      3600
     gaatttacat ctctatgtac gcgttccatg gatgctggtt tgcaagtgga cgctgtttat      3660
     actgatttta aagcagcttt tgatagagtc aatcacgaaa ttcttctgta caagttggaa      3720
     agaatgggtg tgtcgataac ggtagtacgc tggttgaaat cttacttggc agacagatct      3780
     gtgagagtac gcattggttc aacatactca gaaacattct caatcttgtc cggcgttccg      3840
     caggggagta atttgggtcc tctcctattc tccctttaca ttaacgacat gtctcgtgtg      3900
     atacctagag gtacccgcct gttatttgcg gatgacgtta aattattcat gattatcgcc      3960
     agcttagatg attgccaagt acttcagcaa aatttaaata cgttcgagga ttggagcacc      4020
     cgtaattgtt tggagctgtg tgtaactaaa tgttgcacaa tttcatttag caggagacag      4080
     aatcctatgc gttatgacta ctgcctctgt ggtcatattt tagagcgcaa ggacgaggtt      4140
     aaagatcttg gagtgatctt ggatcgccac atgacatttc gtccgcattt cgatgatgtg      4200
     atagctaaag ctaataaaca acttgggttt atattcagga ttgcctgtgg atttgatgat      4260
     ccccattgct tcaagtcact ctattgcgct ttagtacgct cgatactgga atcttctgtg      4320
     ctggtttggt gtccttacag cagaaactgg atcgatcgat ttgaggccat tcagcgaaaa      4380
     tttgtgcgat tagcacttag gaatcttcca tggcaggatg ccctcaatct cccaccctac      4440
     gaacaccgat gcatgctgct tggaatcgac accttggaaa agagaagaca tagtatgcag      4500
     gcagagttca tttcgaaggt tctcaacagc gaaattgatg caccagctat tttagcggag      4560
     ctgcaactct acgttcccga acgtcccctt cgtcgacgaa acttcttaca tttaccaagc      4620
     cgcaacagcc gttatggaca acacgatgcc ctgagattta tggccctccg ctacaatgaa      4680
     actgctgagc attacgactt ttacatgtct gaccagaata ttcctttgat aagttgaagc      4740
     ttacattgtt tactagttta ttaattcttt gtatttaagt attttgtaat tttgtttata      4800
     tttgtgttat aattactagt attttaattt gtattgccag acgtttatat gttatgtatg      4860
     tgtaaatcat tgtcgaaaag atatggggtt tttatgccaa cttgaattat gcaccatgct      4920
     agcaattcaa tttggctttt ccccccatca atcttcatta agacaatcgt gtcagatgga      4980
     gaaaattaat aaaataaata aataaataaa                                       5010
//
ID   CR1-93_AAe  repbase;    DNA;    INV; 5188 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-93_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5188
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1181-1181 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           281..1696
FT                 /product="CR1-93_AAe_1p"
FT                 /translation="MTSVLCDVCVQSIVAETDRVYCFGGCNKILHVRCSDL
FT                 TRAGANALKDNVGLKYMCFDCRKAQICLNKLQQKCSELVEKFDALNCKFND
FT                 LTSNVESGIKTQLQAFENSISRIESTIHHQLLNSNSFLSAANINCISDEDQ
FT                 EKESYAAVCRNNINTKRKKSTSEKPTDSNSAQTQHEIGGTLRSGKRRLPVP
FT                 RIVVQSDAASCASTSHSNQPISPLVKTKRIERFEKTVLLRPKCSQQYEVTK
FT                 SDVCDKLDPIAFAVKEVHFRDSGEVTIQCDSKEHASKLVSAATDALSDKYT
FT                 VEVMKPLNPRVKLIGLTSKFDESVLIQKIKTQNNLPSTFKAWLIRIAEPQN
FT                 KNLNKFNVVLELDAPSFDAIMKLQRVYIGWERCRVVENINVKRCYNCSEYG
FT                 HLASSCEKPVCCPRCAECHEISECVSDFVKCVNCDKMNSLRTAKSDHLADI
FT                 HHSSWSQKCPIYIKRFNKARQNIDYSI"
FT   CDS           1700..5113
FT                 /product="CR1-93_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSTLPSPLAVRTADRVHQSSVDDPVLSGKYKIGICPA
FT                 EVGTTATLCHRKKSILQNLTLVQSNTSSSDVAQLSTDQPSPLSLCAPEQIN
FT                 DRVFDQSSVDSPVLSGNYRTGICLAEARKTATLCHSENPILQTSLPVQTYT
FT                 LDDAQPPTDKTALQSRSPIGNDTEGKFTTNNESHVEGTHGSLNIFYQNVRG
FT                 LRTKVDEFFLAATDSDHDVIVITETWLNEEFISQLLFGDRFTVYRKDRNAE
FT                 LTGKKRGGGVLIAVSNHLKSSSVALTMHMELEQLWVRVTTASSNAYIGVIY
FT                 ISPEQAMDSSNIEKHIECVSHVTDRSGPRDSILLLGDFNQPGLVWKTDFND
FT                 YFYPDPSESTFSRSSSALIDGMSLLNMKQLNPVVNHMNRKLDLVYCNEQSA
FT                 RQCNVTEAVEPLVEIDAFHPALLVSFKCPRIVSFVESAVVPQLNFRKTDFT
FT                 ALNHALLETDWTALHAADNVNEAVRILTNTLTELFRVYVPSHRAARSPPWS
FT                 NSGLRILKRERARYLRLYSANRNPATKRQFQMASNRYKNYNRLLYSLYVQR
FT                 KQNELKNNPKKFWSFVNEKRKENGLPAIMSYGTDSGASPAEICRLFACHFS
FT                 SVFKPGVTSSQHITAALRNVPEGILNMRNITFSEEDIGSAINKLKSSYQPG
FT                 PDGIPPIVFKMCGTALAGPLTAICNLSMAQSAFPDEWKESTLFPVYKKGDR
FT                 GNVSNYRGITSLCTGSKLLEILVSDMLFHEIKNHISCDQHGFYAGRSTVTN
FT                 LTEFTSFCIQNMESGAQIDTIYTDLKAAFDRVDHSLLLAKIQRMGAASNFV
FT                 NWLHSYLTNRRLSVKIGTSQSSYFSNSSGVPQGSNLGPLLFSMFFNDVCAV
FT                 LPRGCRLMYADDLKIYLVVRSSENCQELQNYVDSFSDWCEVNELTISTNKC
FT                 SIISFTRRKNPIIWNYNIRGEQIDRVAVIKDLGVHLDTKLSFREHYSITVA
FT                 KANRNLGFIFRISSEFRDPHCLRALYYSLVRSVLEYASVVWSPYTGIWTSR
FT                 IEAVQSRFIRYALRFLPWRDPATLPPYQNRCRLLGMDTLQRRRQLERVLFV
FT                 QKLLIGSIDAPNILSQININVVSRSLRHTDFLRLDLRRTDYGQNEPIRVMC
FT                 SLFNRVYNLFDFSISTHTFRYRLLVSNAFV"
XX
SQ   Sequence 5188 BP; 1498 A; 1109 C; 1105 G; 1476 T; 0 other;
     tgctttggta gcgtcggcga ttcgtgtgta tcgtaaagtt acggaatgtg aacgcacttt        60
     taatcatgtt atttttgtcg tataaactgt aaagtgatat ctgtgtattc agtgtttgac       120
     attgtctcta tcgagatatt aatcgaaacc gataaaccta agaagatacg attttatcca       180
     aaaatataat ttcttgtcga cggagattgc aaagcaaaca acagacagtc tattgaattc       240
     atcatccagc ccgctacagg gcgaccgaag accgttcgag atgacgtcgg tgctgtgtga       300
     tgtgtgtgta cagagcattg ttgccgagac cgatcgtgtt tactgctttg gtggatgcaa       360
     caaaattctg catgtacgat gttctgatct gactagagct ggtgccaatg cactgaaaga       420
     caacgtaggt ctaaagtaca tgtgctttga ctgcaggaaa gcacaaatat gcctcaacaa       480
     actgcagcaa aaatgttcgg aattggttga aaaattcgac gcactgaatt gtaagttcaa       540
     cgatttgacg tcgaatgttg aaagtggaat caaaacgcaa cttcaggcat ttgaaaatag       600
     catatccaga atcgagtcaa caattcatca tcagctgcta aacagcaaca gttttctgag       660
     cgccgctaat attaactgta ttagcgatga ggatcaagaa aaagagtctt atgctgccgt       720
     atgtcgtaac aatatcaata cgaaaaggaa aaagtccaca tcagagaaac ctactgatag       780
     taactcagct caaactcagc atgagattgg cggaacactg cgatctggta aacgcaggtt       840
     gcctgtacca agaattgttg tccaaagtga tgcagcttct tgtgcctcta caagccattc       900
     aaatcagcca atatcaccac tggttaaaac aaaacgcatt gagagatttg aaaaaactgt       960
     tctgttgcgt cccaagtgta gtcagcaata tgaggtcact aaatcggacg tgtgtgataa      1020
     actagatccc attgcttttg cggttaagga agtgcatttc cgagattccg gtgaggttac      1080
     cattcaatgt gactcgaaag aacatgcatc gaaacttgtt tctgcagcca ctgatgcact      1140
     gtcggataaa tacacagttg aagttatgaa accactgaac ccaagagtga agctgattgg      1200
     tctaactagc aaattcgacg aaagtgttct aatccagaaa atcaaaactc agaacaatct      1260
     tccatctacg ttcaaagctt ggttaatacg cattgcagaa ccacaaaata agaatttaaa      1320
     taaattcaat gttgttcttg aacttgacgc tccatctttc gatgcaatta tgaaactcca      1380
     acgtgtctat atcggatggg aaagatgtcg tgtagttgag aatatcaacg ttaaacgctg      1440
     ctacaactgt tctgaatatg gccatttggc atcttcgtgt gaaaagcctg tctgctgtcc      1500
     aaggtgcgcg gaatgtcatg aaataagcga gtgtgtctca gattttgtga aatgcgtcaa      1560
     ctgcgacaag atgaatagcc tgcgaactgc gaagtcggat catctggctg atatccatca      1620
     ttcctcctgg agtcagaaat gccctattta tatcaagcgt ttcaacaagg cacgtcaaaa      1680
     tatagactac tccatctagc aatcaacatt accttccccg ctagcagtgc ggactgcgga      1740
     ccgtgttcac caatcttctg tggatgatcc tgttctttca ggtaaatata agattggtat      1800
     atgtcccgcc gaagtgggga cgaccgctac actttgtcat aggaaaaaat cgatcttgca      1860
     gaacttgact ctagtgcaga gtaatacgtc atcttccgat gtggctcaac tttcgactga      1920
     tcaaccatcg ccactctcat tgtgtgctcc tgagcaaatc aacgatcgtg ttttcgacca      1980
     gtcttcggtg gattctcctg ttctctcagg taattatagg actggtatat gtctcgccga      2040
     agcgaggaag actgctacac tgtgtcatag cgagaacccc atcttacaga cttcactgcc      2100
     agtgcaaact tatacgctcg atgatgctca accacccaca gacaaaactg cgttgcaatc      2160
     caggagcccg attggaaacg atacagaggg aaagtttacg acgaataatg agtcccacgt      2220
     tgagggtact cacggcagtc tcaacatctt ctaccagaac gtgagaggtt tgcgcacgaa      2280
     ggtggatgaa ttctttcttg ctgcaacgga ttcggatcac gacgtgattg ttatcaccga      2340
     aacctggttg aacgaagagt tcatctcaca acttttgttt ggcgacagat tcactgtata      2400
     ccgaaaggat cgtaacgctg agctaaccgg caaaaaacgt ggtggtggtg ttcttatcgc      2460
     cgtttcgaac catctgaagt ctagctctgt agctctcacc atgcatatgg aactggaaca      2520
     gctatgggtt cgcgttacta ctgctagcag taatgcttac attggtgtaa tatacatatc      2580
     ccctgaacaa gcaatggatt ccagcaacat tgagaaacac atagaatgtg tcagtcatgt      2640
     taccgatcgt tcggggccac gtgactccat tctgttattg ggtgatttta accagcctgg      2700
     tctggtttgg aaaactgatt tcaacgatta tttttacccc gacccaagtg aatcaacttt      2760
     cagtagatct agctcggcac tcattgatgg tatgtcgcta ctcaatatga agcaactaaa      2820
     tccagttgtg aatcacatga atcgtaaact ggaccttgtt tactgtaacg aacaatccgc      2880
     taggcaatgc aatgttacag aagcagttga gccgctggtt gagattgatg cattccaccc      2940
     ggcattattg gtttccttta aatgtccgag aatcgtgtct ttcgtagaat ctgctgtagt      3000
     acctcagctc aattttcgca aaactgattt tactgcgcta aatcatgctc ttttggaaac      3060
     cgattggaca gcactgcacg ctgcagacaa tgtcaacgaa gctgttcgaa ttctgactaa      3120
     tactctcact gagttgttcc gtgtgtatgt cccttcacat cgagccgctc gtagccctcc      3180
     atggtcgaat tctgggctaa gaattctgaa aagagagcgg gccaggtatc tgcgtctcta      3240
     ctctgcaaat cgaaatccag ccaccaaacg acagtttcag atggccagca acagatataa      3300
     gaattacaat cgcttgcttt attcgctgta tgtacagaga aagcaaaatg aacttaaaaa      3360
     taatcctaaa aagttttggt cgttcgtaaa tgaaaaacgt aaagagaatg gacttccggc      3420
     cattatgtcc tacggtactg actcaggagc ttctccggct gagatatgca gactctttgc      3480
     atgccatttt tcaagcgttt tcaaaccagg cgtgacatcg tcgcaacaca ttactgccgc      3540
     tttgcggaat gttccggagg gtatactcaa tatgcgaaac attacgtttt ctgaagaaga      3600
     tatcggtagc gccattaata aacttaagtc ttcgtatcag ccaggcccgg atggtatccc      3660
     gccaattgtg ttcaaaatgt gtggaactgc acttgctggt ccattgacag caatttgtaa      3720
     tttatcaatg gcacaatcag ctttcccaga tgaatggaaa gaatcgactc tgtttcctgt      3780
     gtacaaaaag ggggaccgtg gaaacgtatc taattaccgt ggcattactt cattatgcac      3840
     aggctctaaa ttgctagaaa tccttgtgag cgatatgcta ttccacgaaa ttaaaaatca      3900
     catctcgtgt gatcagcatg gattttatgc tggcaggtca acggtcacaa acctaactga      3960
     atttacttca ttttgcatac aaaacatgga gagtggagct cagattgata ccatctacac      4020
     agacttgaaa gctgcatttg accgtgtaga ccactcgttg ctgctcgcaa agatacaacg      4080
     gatgggtgcc gcatcaaact tcgtcaactg gctgcattca tatttaacga accgtcgtct      4140
     gtctgttaaa ataggaacat ctcaatccag ctatttttcc aacagttctg gtgttcccca      4200
     ggggagcaac ctcggtccac tgctattttc tatgtttttc aacgacgttt gtgcagttct      4260
     accgcgtgga tgccggctca tgtatgccga tgatttgaag atatatctcg tcgttagatc      4320
     atctgaaaac tgccaggagc ttcaaaatta cgttgatagt ttttcagatt ggtgtgaagt      4380
     caacgaactt acaatcagca cgaataagtg ttcgataata tctttcactc gcagaaaaaa      4440
     tccaattatc tggaactaca atattcgcgg agagcaaata gatcgagtgg ctgttatcaa      4500
     ggaccttggt gtacatttgg acacgaaact gtcttttaga gagcattact ccatcacagt      4560
     tgccaaggca aaccgaaatc tgggttttat attcagaatc tccagtgaat tcagagaccc      4620
     acactgtctc cgtgcactgt attattctct agtgcgctct gtgctcgagt acgcttctgt      4680
     ggtttggagc ccgtacaccg gtatttggac atctaggata gaagccgttc agtctcgatt      4740
     catccgttat gcgttgaggt ttcttccatg gcgtgatccc gctactcttc cgccgtatca      4800
     gaaccgatgt cgactccttg gaatggacac attacagagg cggcgacaac ttgagagggt      4860
     attgtttgtg caaaaactgc taataggtag tattgatgca cctaatattc tttcgcaaat      4920
     caatatcaat gtagtttctc gtagcttaag acacactgac tttcttagat tagatttaag      4980
     acgtactgat tatggtcaaa atgagccaat tcgtgtaatg tgttctttgt tcaatcgtgt      5040
     gtacaatctg tttgacttct ctattagtac tcatactttt agatatcgac tacttgtttc      5100
     caatgcgttt gtttagttta agttttattc atgtagacaa tgatgttaga tgaatgtagc      5160
     aaataaataa ataaataaat aaataaat                                         5188
//
ID   CR1-94_AAe  repbase;    DNA;    INV; 5634 BP.
XX
AC   .
XX
DT   11-APR-2011 (Rel. 16.04, Created)
DT   11-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-94_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5634
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1182-1182 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91% identity.
CC   The ORF1 protein of this family, combined with that of CR1_Ele20,
CC   shows high similarity to those of L2B elements, such as
CC   L2B-1_AAe. It indicates ORF1 shuffling between CR1 and L2B.
XX
FH   Key           Location/Qualifiers
FT   CDS           704..1573
FT                 /product="CR1-94_AAe_1p"
FT                 /translation="MDNLENRVEEDVTPKSTFAEVLKKRAEKRVMEQPKKV
FT                 QPIQKPNPVVVVKPKAGVQVEDVRAELRKKVDARQLNVEKVMSGKSGEVAI
FT                 ALKDEQSAKLLKENVEKNMGGLYDVNVRESIKPTIKLIGMSEEMNEQELKE
FT                 TLVDQNIAFENLKHFKLCKLYCNEKLRFNNVSAIIELDAETFRKAVLEEKL
FT                 NCGWDRCRVKDGLRVTRCYNCCAFNHKSKDCKAATPKCAVCSGSHLVSECQ
FT                 SNVKECANCKKMNTDRKLRLDTNHAAWSDSCPVYQKQLEQRKSFVDYSV"
FT   CDS           2326..5535
FT                 /product="CR1-94_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MTCRLPDHDDPLPGSEEVSRNPFGESCRSAGCSVAVI
FT                 PALSMLVGDTGLQDEGNCTGIIEAVDTPAPSGNSMDSICPAEARLDAAPLL
FT                 NVNAFQAAHLLPLSNGSISSHADAPEESLRIYYQNVRSLRSKADDILTATC
FT                 EAEHDVIVLTETWLNDQFHSAQFFGNHYTVYRKDRCAVSTGKSRGGGVLIA
FT                 VSNRLISDVAPIVTDDLEHLWITLQCSNRRLWIGVAYLAPDISSDVSTIDR
FT                 HLSAVNTVTSAMRYGDVHVLLGDYNQPHLCWKRAPTGVVILDAEKSTFNTA
FT                 SSKFVDGMSFNNMRQLNTVTNVRDRTLDLLFINEDASTHCSVFEELDSYVS
FT                 ADLYHPALVAVLKISLPCKFVDAAEVNRYNFNKADIASLNIAYENIDWTQI
FT                 ESMNDIDLAVSFFNQTVTSMFEQYIPVVQPRCKPPWSNAYLRRLKRARASA
FT                 LKAYSRERNDYTKHCFVSASNRYRRHNRFLYSKYVERKQSELKQNPKSFWK
FT                 FINEKRSEHGLPTNMFLGETTANSTEAKCNLFADHFSSVFNPDAATDQQIE
FT                 TALRDVPEHIISLSAVEFTDNDVFEALCGMKSSSVPGPDGIPSVMLKKCAG
FT                 ALCQPLRMMINLSLRSGRFPECWKRSYMFPVFKKGDKKDIVNYRGITSLCA
FT                 GSKLFEILMGEVLFRKMQPYIATEQHGFFPGRSTSTNLLEFTSLCMTGMDG
FT                 GAQIDTVYTDLKAAFDRIDHRILLAKLDRLGVSYDIVLWLRSYLCNRKLSV
FT                 KIGDTESFMFCNTSGVPQGSNLGPLLFAIFFNDVCCLLPQGCKLVYADDLK
FT                 LYLHIRSTGDCLELQRLIDLFTEWCNRNLLIVSVSKCYVISFSRKKNDIEY
FT                 PYCIDNQLLTRVSEIKDLGVILDKKLTFHSHYLQTIAKANKNLGFIMRVGY
FT                 EFRDPYCLRALYYSLVRSVLDSNSIVWSPHSNNWITRIESIQSKFVRFALR
FT                 FLPWANRYELPPYEDRCQLLRMEPLYIRRNHQKALFVAKLLTSKIDSPKIL
FT                 GTIGIYAIERPLRTRGFLYLPSRRTLYGLNEPIRSMCNVFNSVYYLFDFDS
FT                 SIEIFKNRLRNAR"
XX
SQ   Sequence 5634 BP; 1595 A; 1133 C; 1299 G; 1606 T; 1 other;
     ttttttttac tgtgccgacg gtgtgattag atcgtttact tcgtctgatc accaaaatta        60
     tgttttatgt gcgtaaatct cgcgtaatag tatccaaagt ttgtgcttgt gttgtgggaa       120
     cattgtgctc ataaaattaa aaagcaatca aggtgatacg ttaagtggaa accccgaaat       180
     tcagtgattc atattagcat attactgaag ctagtttgta acctgtatcg tttgttttcg       240
     cccgggcgac atgcccgtgg agatggatgg tgaggagagt gagcacggct gctgtagcca       300
     accgtgcgcg cagtgcgctt tgccgatcag agatagtgac gmcagtgtcg aatgcttcgg       360
     tcgttgtaaa ctgtctatac atatccactg tttacccgat gcgacgaacg aggagataat       420
     actgttgcgg aagatcagaa atgctgtgtt cgtatgcgat acgtgtttga gtcttgccga       480
     attcgacgat aggcacagtg aaaaacgatt ggacgaaatt gctaagaaat tggaggacct       540
     cgcgggtgta gtgggaaatc gtgaaaaatt tcgatcaaac tgtgaagaga gtcgtgtgcg       600
     aagaactagc acgagcgaat aagcgtgatg cagctgctct tagtgaaaaa gacgatgtat       660
     cccaccgtag gtggttacac gctcgtctgc taaacggaga aaaatggaca atttggagaa       720
     tcgcgttgag gaagatgtca cgccaaaatc aacttttgcg gaagtgttga aaaagcgtgc       780
     tgaaaaaaga gtgatggaac aaccaaagaa agttcagccg attcagaaac caaatccagt       840
     ggtcgttgtg aaacctaagg caggtgtgca agttgaagat gtacgagctg agctgcgaaa       900
     gaaggtggat gctagacagc taaacgttga aaaggtgatg agtggaaaat ccggcgaagt       960
     tgcgattgcg ttgaaagatg agcaaagcgc gaaattgtta aaggaaaacg ttgagaaaaa      1020
     tatgggtggc ttgtacgatg tgaacgttag agaaagcatt aaaccaacta tcaaattgat      1080
     cggtatgagc gaagaaatga atgaacagga actcaaagaa accttggtcg atcaaaacat      1140
     agctttcgag aatctcaagc acttcaaact gtgcaagtta tactgcaacg aaaaactgcg      1200
     gttcaataat gtcagcgcaa tcattgagct cgatgctgaa acgttccgaa aagccgtgct      1260
     tgaagaaaaa ttgaactgtg gatgggatag atgtcgagtg aaagacggct tgcgagtgac      1320
     gcggtgttac aattgttgtg ctttcaacca taagagtaaa gattgtaaag cagcaactcc      1380
     gaagtgcgct gtgtgtagtg gaagtcatct ggtgagcgaa tgtcaatcga acgttaaaga      1440
     atgtgctaat tgtaagaaaa tgaacactga tcgcaaactg agacttgaca caaatcacgc      1500
     tgcgtggagc gattcatgcc cggtgtacca gaagcaactt gaacagcgta agagtttcgt      1560
     cgactattcg gtatagcaac tattgccctg tcacgaagaa ctcgaaaaca gtgagcacag      1620
     ctgtgatgga aatatagaag cagtcgaaac tcctgctttc tcaggtaatt tgattcagag      1680
     tatatggcct gccgaagcta ggcatggtac tgccccccac ctgaatttaa acgcacttca      1740
     gataacttgt cgattgcccg attctgacga ctttctccct ggatccgaag aagtttcacg      1800
     aagtcccttt ggcgaaagct gctgttctgc tggatgttcc atagcggttg atatccctgc      1860
     tttgtcaggt aattttgaaa tggtatatgc ctcgccgaag ctaggcaaga tgctgcgccc      1920
     gttttagcaa tgcgattcac agacgacatg acttgccgat tgccgtgaag accctctccc      1980
     tggatccgaa gaagtttcgc gctgctgttt tggatgttct atagcagttg aaaccctgct      2040
     tcgtcaggta attttgagaa tagtatatgc ctcgccgaag ctgggcaaga tgctgcgccc      2100
     ttttaagcca aagcgattca cagaacgata tgacttgccg attgcccgtt ctgacgaccc      2160
     tgaatccgtt tcacaagtcc ctttggagaa aactgctgtt ctgctggatg ttctatagca      2220
     gttgataccc ctgctttgtc aggtaacttt gagaatggta tatgcctcgc cgaagctagg      2280
     caagatgctg cgcccgtttt aagtcaatgc gattcacaga ttgatatgac ttgccgattg      2340
     cccgatcatg acgaccctct ccctgggtcc gaagaagttt cacgaaatcc ctttggcgaa      2400
     agctgccgtt ctgctggatg ttcagtagca gttatccctg ctttgtcaat gctcgttggt      2460
     gatactggtc ttcaggatga aggcaactgt acaggaataa tagaagcagt cgacactcct      2520
     gctccgtcag gtaattcgat ggacagtata tgtcctgccg aagctagact tgatgctgca      2580
     cctctcctaa atgtaaacgc attccaggcg gcccatctac tgccattgtc taacggatcc      2640
     atctcaagtc atgctgatgc tccggaagaa tctcttcgca tttactatca gaacgtcagg      2700
     agcctacgta gcaaagccga cgatattctt accgctacgt gtgaagcaga gcatgatgtt      2760
     atagtgttga ctgaaacttg gcttaacgat caatttcatt ctgcacagtt ttttggaaac      2820
     cattacaccg tataccgtaa agaccgttgt gctgtcagca cgggtaaatc cagaggcgga      2880
     ggagttctga ttgctgtatc gaaccggctg atctccgatg ttgcccctat agtaacagat      2940
     gacctggaac atttgtggat cactttacag tgctctaata ggagattgtg gatcggtgta      3000
     gcgtaccttg ctccggatat ttctagcgat gtttcaacaa tcgaccgtca cttatctgcc      3060
     gttaatacag tcacttcagc catgcggtac ggcgatgttc atgtactgtt aggagactac      3120
     aatcagcctc atctttgttg gaaaagggct cccactggcg ttgttatctt ggatgccgaa      3180
     aaaagtactt tcaatactgc cagctcgaaa ttcgtcgatg gaatgtcctt caataatatg      3240
     cgacagttga acactgttac aaacgttcgc gatcgtacac tggatctact atttattaat      3300
     gaagatgcta gtacacattg ttcagtattt gaagaactag attcgtatgt atcagccgat      3360
     ctttaccatc ctgcgcttgt agctgtattg aaaatttcgt tgccgtgtaa gtttgtggat      3420
     gcagctgagg ttaatcggta caacttcaac aaagcggata ttgcttctct taatatcgct      3480
     tacgagaata tcgactggac ccaaatagaa agcatgaacg atattgactt ggctgttagc      3540
     ttcttcaatc aaacagtgac ctctatgttt gagcaataca tccctgttgt ccaaccacgt      3600
     tgcaaaccac cttggtcgaa tgcctactta cgtcgcttga aacgtgcacg cgcatctgct      3660
     ctgaaagcat attccagaga acgcaatgat tatacgaagc actgttttgt gtctgctagc      3720
     aaccgctacc gccgccataa tcgttttctg tactccaagt atgtggaaag gaagcagtcg      3780
     gagctaaaac agaatcctaa atcattctgg aaattcataa acgagaagcg tagtgagcat      3840
     ggtctgccaa ctaatatgtt tcttggagaa actactgcca actcaaccga agcaaaatgt      3900
     aacctcttcg ccgaccattt ctctagtgta ttcaatccag atgctgcaac ggatcaacaa      3960
     attgaaactg ctttacgcga cgttcctgaa cacattattt ctttaagtgc tgtagaattc      4020
     accgataatg atgtcttcga agctctttgc ggaatgaagt cttcatctgt acctggtcca      4080
     gacggtattc catcggtaat gttgaaaaaa tgcgctggag ccctgtgcca gccattgcgt      4140
     atgatgataa atctttcttt gcggagtggt agattccctg aatgctggaa acgctcgtat      4200
     atgttcccag tttttaaaaa gggtgacaag aaagatatcg tcaactacag aggtataact      4260
     tcactgtgcg cgggttctaa gctgttcgag attttgatgg gagaggtgtt gtttcgaaag      4320
     atgcaaccgt acattgctac agagcagcat ggctttttcc ctgggcgttc cacaagcacg      4380
     aacttgcttg agtttacttc gctttgcatg accggaatgg acggaggggc gcaaatcgac      4440
     acagtgtaca ccgaccttaa agcagcgttt gacagaatag atcatcgaat tcttctagca      4500
     aaacttgatc gtctaggtgt atcatacgat attgttcttt ggcttcgatc ttacttgtgc      4560
     aaccgtaagc tgtctgtaaa aattggagac acagaatcgt ttatgttttg taacacttcg      4620
     ggagttccac aaggcagtaa tttaggacca ttattatttg ctatattttt caacgacgtg      4680
     tgctgtttgc tcccgcaagg ctgtaagcta gtgtacgctg atgacttgaa attgtacctc      4740
     catattcgtt ctactggtga ttgtctcgag cttcaacgat tgattgactt gtttactgaa      4800
     tggtgtaatc gaaatcttct tattgttagt gtttctaaat gttatgtgat aagttttagt      4860
     cgtaagaaaa atgacattga atatccctat tgtattgaca atcagctact gacaagagta      4920
     tctgaaatta aggacttagg tgtaattctg gataaaaagt taacgttcca tagtcattac      4980
     ctccaaacaa ttgctaaggc caacaaaaac ctagggttta taatgcgtgt cggttatgaa      5040
     ttccgcgatc cgtattgttt gagagcttta tattactcgc ttgtccgctc tgtgttggac      5100
     agcaattcaa tagtatggag cccgcatagc aataattgga taaccagaat tgaatccata      5160
     cagtcgaaat ttgtgaggtt tgctttaaga tttcttcctt gggccaatag atatgagctg      5220
     cctccatacg aagatcgttg tcaacttttg agaatggaac cattgtatat aagacgaaac      5280
     catcaaaaag cattatttgt agctaaatta ttaactagta agatagattc acctaagatt      5340
     ttaggaacaa ttgggattta tgccatcgaa agaccgttaa gaactagagg atttttgtac      5400
     cttccttctc gtcgtacact ttacgggctt aatgagccta tacgatccat gtgcaatgtg      5460
     tttaattcag tgtattattt gtttgatttt gactcgtcta tagaaatttt taaaaatcga      5520
     ctccgtaatg ctcgttaata ttagctgtgt tagaataact ttagattaag tagatcatgt      5580
     agaccatgtt gttcgatgat tatttcacaa taaataaata aataaataaa taaa            5634
//
ID   CR1-95_AAe  repbase;    DNA;    INV; 4542 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-95_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4542
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1183-1183 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..1361
FT                 /product="CR1-95_AAe_1p"
FT                 /translation="MNCEICALDASVDSALWTCAGCPRKFHAACIGVTVHR
FT                 SSMRRKDKKVVDFSSYVLPCCDSCQELLQAKLDFNRLTEQQKLLTEQLHAN
FT                 TEVAHRSNLQQNKQSMVNEAFEGLEILMTTIKNELATINKTSSLAGCVVAI
FT                 KNHITTILDTVTKMTNDNISKSFESVSSNLATELKNINDGICQINQLHLDL
FT                 AATTAMSSNPYLGIDILDELKTWSAKIIAPRSTEPSTSSHGSCTSLNREND
FT                 ADNSGWRCLGTRKVWRADWTDYDARKIVRLNQQKQAAKAKRRRKQKINRNN
FT                 TADNGMNHHPNDSRNRNSAGRLDGDFIAAGGHSFLPPDRVLLAAAKERFSR
FT                 PPQCSSSGTPAAQRPIQFQRGEILNPSRTCVENQQPAHGRQSHRISTGCSS
FT                 NSAASCEACHAQHSCFRRNRRTP"
FT   CDS           1313..4402
FT                 /product="CR1-95_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="SVPCSTFVFSAQSTHSLEVGLDLTHSIEVGQDRSLLY
FT                 LTHSSHSEEVRDSQESGIPIDSTQNTSSNPTQIGTEIVVYCQNFNRMKSSL
FT                 KIREIHNKILSCSFPIILANETSWDEGVRSEEVFGCNYNVYRDDRNFETSE
FT                 KKSGGGVLVAVSIQFNSEIISTEKCEEFEHVWVKILVEGETHVFASVYFPP
FT                 NNARKNSYDKFFQIADEIMSKLSPEVKVHIFGDFNQRSIDFIPDADNECIL
FT                 LPIVGDNETLQFLFDKIASLGLNQVNHIKNKQNNYLDFLLTNMYEDFCVSE
FT                 SLTPLWKNEAFHTAIELSIFVHKNNRPDDCEYEEVFQYHSANYENIRERLN
FT                 RIDWQTILRSERNVEASVDVFYKLLFEIILDEVPLKRIRRRNHSKTPVWYN
FT                 EQIKNLKNRKQKAHKKYKRNNNNENLTSYLSICDLLNQAIDNAYEDYNLKT
FT                 ENEIKSCPKNFFNYVNTKLKSDNFPSIMHLDKNVGDSSEKICNLFAFFFQE
FT                 IYTTFDDEDRDCNYFDFLPEYTRDIEISHINVKDVMEGLNKLDVSKGSGPD
FT                 GIPPLFMKSLAVELTTPLFWLFNMSLESGTFPKSWKSSYLVPIFKNGKKSD
FT                 IRNYRGIAIISCIPKLFEAIINEKLFNQIKSRITNAQHGFFKGRSTNTNLI
FT                 EFVNYTLTAMDNGHHVEALYTDFSKAFDRVDIPMLLFKLQKLGIESNLLKW
FT                 IESYLTNRQQIVRFKGSKSNPIQVTSGVPQGSHLGPLLFILFVNDISLILK
FT                 HIKVLIYADDMKLYLEIINKEDINIFQNEIKVFYTWCNKSLLQLNVKKCNL
FT                 IAFSRKRDTPNVTITLGNQPVVKCDRVRDLGVILDSKLTFIDHYNTIINRA
FT                 NNMLGFIKRFSYSFHDPYTIKTLYTAYVRSIIEYCSVVWSPFSITHEERIE
FT                 SVQKQFLLFALRKLGWTRFPLPSYKARCMLINIQTLKVRREFAMVSFVNDI
FT                 VSHRIDSAELLAKLNFYAPFRQLRNRNIFLTCHHRTNYAKYGPLNQMMATY
FT                 NKHCASIDFTTTKTKLKRYFNSVR"
XX
SQ   Sequence 4542 BP; 1570 A; 882 C; 836 G; 1254 T; 0 other;
     cagtcagtca gtcgtcaatc agtacggacg tgttttttaa ttgctccgac cccgcgcgtg        60
     gttttaattt ttttttaatt cgttaattaa acatattttt tgaatacgtc atgaactgtg       120
     aaatttgtgc attggatgcc tccgtcgatt cggctttgtg gacatgtgcg gggtgtccac       180
     gtaaatttca tgccgcgtgt atcggcgtta ctgtgcaccg gagttcaatg cggaggaagg       240
     acaaaaaagt ggtggacttc agctcatatg ttctgccttg ttgcgatagc tgccaagaac       300
     ttctccaggc gaaattggat tttaatcgcc ttactgagca gcaaaagctt cttaccgagc       360
     agctccatgc aaacaccgaa gtggctcatc ggtctaatct gcagcagaac aaacaaagca       420
     tggtaaatga agctttcgaa gggctcgaga ttttgatgac cacaataaag aatgagcttg       480
     ctaccattaa caaaaccagt agtctagctg gttgcgtagt agccataaaa aaccacataa       540
     cgacaatact tgatactgtc actaaaatga cgaacgacaa catatcgaag tctttcgaat       600
     ctgtatcatc aaacttggcc actgagctca aaaacattaa tgatggcata tgccaaatca       660
     atcagctgca cctggatttg gcagccacaa ccgcaatgtc ttcgaaccca tatctaggca       720
     ttgacattct cgacgaattg aaaacttggt cagcgaaaat catagccccg aggagcactg       780
     aaccttctac ttcgtcacac ggttcatgca ccagtttgaa ccgcgaaaat gatgccgata       840
     actcaggttg gcgctgcctt ggaacaagaa aggtgtggag ggctgactgg acggactacg       900
     atgcgcgcaa aatagtccgc cttaatcagc aaaaacaggc ggcaaaggct aagcggagaa       960
     ggaagcaaaa aatcaaccgc aataacacag ctgacaacgg aatgaatcat catccaaacg      1020
     acagtcgaaa tcggaatagt gcgggtcgac tggatggaga cttcatagcg gcaggcggtc      1080
     acagctttct accaccggac cgagtacttt tggcagcagc aaaggagaga ttttccagac      1140
     caccacagtg ctcatcatca ggaacaccgg ctgctcaacg gcccatacaa tttcaacgag      1200
     gagaaatttt gaatcccagc cggacatgcg tcgaaaatca gcaacctgcg catggcaggc      1260
     agtcacatag gatttctacc ggatgctcat caaattcagc tgcatcatgt gaagcgtgcc      1320
     atgctcaaca ttcgtgtttt cggcgcaatc gacgcactcc ttagaggtag gactcgactt      1380
     aacgcactct atagaggtag gacaagatag aagtttactg tacttgacac attcctcaca      1440
     cagtgaagag gtaagagaca gccaagaatc aggtattcca attgactcaa cccagaacac      1500
     ttcttcaaat ccaacacaaa ttggaacaga aatcgtagta tattgccaaa atttcaaccg      1560
     aatgaaaagt tcgttgaaga taagagaaat tcataacaaa attttgagtt gttccttccc      1620
     aataatttta gcaaatgaaa caagttggga tgaaggagtt aggagtgaag aagtgtttgg      1680
     gtgtaactat aatgtttata gagatgaccg gaattttgaa acgtctgaaa agaagtcagg      1740
     gggtggagtt ctagttgctg tttcaattca atttaattcg gaaattatca gcactgaaaa      1800
     atgtgaagaa ttcgaacatg tttgggtgaa aatacttgtg gaaggcgaaa cacatgtgtt      1860
     tgcctcggta tactttcccc caaataacgc tcgtaaaaac tcttatgata aatttttcca      1920
     aatcgctgac gaaatcatgt ctaagctctc tccagaagta aaagttcaca tattcggaga      1980
     ttttaatcaa agaagcattg actttattcc agacgctgac aatgagtgca tcttgcttcc      2040
     aatcgttggt gataacgaaa cattgcaatt tttatttgac aaaatcgcta gcttaggcct      2100
     caatcaagtt aaccacatta aaaataagca aaataactat ttagattttt tattaacgaa      2160
     tatgtatgag gacttctgtg tgtctgaatc actaacccca ttatggaaaa atgaagcatt      2220
     ccatacggca attgagctct caatttttgt acacaagaat aacagacctg atgactgcga      2280
     atatgaagaa gtttttcaat atcattcggc aaattatgaa aatattaggg aaaggttaaa      2340
     caggatagat tggcaaacga ttttaagaag cgaaagaaat gtcgaagcct cagtcgacgt      2400
     attttacaaa ttgttatttg aaattattct tgacgaggtt ccattaaaaa gaataaggcg      2460
     aagaaaccat tccaagactc cagtgtggta caatgaacaa ataaaaaatt tgaaaaaccg      2520
     caagcagaaa gcacataaaa aatacaaaag aaataacaat aatgaaaact taacaagcta      2580
     tctatcaatt tgtgatctac ttaatcaagc catagataac gcatatgagg attacaactt      2640
     aaaaactgaa aatgaaataa aatcttgccc aaaaaatttc tttaattacg tcaatacaaa      2700
     actgaagtca gataattttc cctcgataat gcatcttgac aaaaacgttg gtgatagctc      2760
     cgagaaaatt tgcaatcttt ttgcattttt ctttcaagaa atctatacta cttttgatga      2820
     tgaagaccgc gattgcaatt actttgattt cttaccagaa tatactagag acattgaaat      2880
     cagtcatatc aacgtaaagg acgtcatgga aggcttgaat aagttagatg tttcaaaagg      2940
     gtctggacca gatggaattc caccattatt catgaagagc ttagctgtag aacttacaac      3000
     tccattgttt tggcttttta acatgtcatt agagtctggt acttttccaa aatcatggaa      3060
     aagctcatac ctggtaccca tctttaaaaa tggaaaaaaa tctgacataa ggaattatcg      3120
     tggtattgcc attatttctt gtattcctaa actattcgaa gcaatcatta atgaaaaact      3180
     attcaatcaa attaaaagca gaataacaaa tgctcaacat ggattcttta aaggacgttc      3240
     aacaaataca aatctaatag aatttgtcaa ttacacactc actgcaatgg ataatggtca      3300
     ccatgtagag gcactttata ctgacttcag taaagcattt gaccgcgttg atatacctat      3360
     gctactattc aaattacaaa aactaggaat agagtctaat cttctgaaat ggattgagtc      3420
     ctacttaacc aaccgtcaac aaatagttag attcaaagga agtaaatcga atcccattca      3480
     agtcacctct ggagtccctc aaggttccca tttgggccct cttctcttca tactgtttgt      3540
     caacgacatc tctttgatcc ttaaacacat aaaagttctg atttacgctg atgatatgaa      3600
     actttattta gaaattatta ataaagagga cataaatata ttccaaaatg aaataaaagt      3660
     cttctacacc tggtgtaata aatccctgct gcaattgaat gtaaaaaaat gtaacttaat      3720
     agcttttagt agaaaacgag acacaccaaa cgttacaatc accctaggaa atcagccagt      3780
     ggtaaaatgt gacagagtca gagacttagg tgtcatctta gattcaaaac taacattcat      3840
     tgatcattat aatacaatca tcaacagagc aaataacatg cttggattca taaaacggtt      3900
     tagttatagt ttccatgacc cgtacacaat taaaacgtta tatactgcat atgtaaggtc      3960
     aataattgaa tattgtagtg tagtttggtc tcctttttca ataacacatg aagaacggat      4020
     agaatcagta caaaaacaat tcctactgtt tgccctacgt aaattaggtt ggacaagatt      4080
     tcctctacct tcttataaag cacgctgcat gcttatcaac atacaaactc taaaagtgcg      4140
     tcgtgaattc gcaatggtgt ccttcgtaaa tgatattgtt tcacatcgta ttgactccgc      4200
     agaactctta gcaaaactaa atttttatgc acccttccga caactgcgaa accggaatat      4260
     attccttacg tgccatcatc gtactaacta tgccaaatat gggcctctta atcagatgat      4320
     ggcaacatat aataaacatt gcgctagtat tgacttcaca acgacaaaaa ccaaattgaa      4380
     gcgatatttc aattcagttc gatgattgta aactcgttta taaaacattg cagcataaaa      4440
     tgttccttta taattcctgt tagaaataag aaaaacatgt aaaattagtg tgtaatgaaa      4500
     cggtctacta ttgattgacg acaaataaat aaataaataa at                         4542
//
ID   CR1-96_AAe  repbase;    DNA;    INV; 3463 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-96_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3463
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1184-1184 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3407
FT                 /product="CR1-96_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="XXNSTTCSSFKPPNPALGRNIVGSLEATEPLTIVVPS
FT                 LPSLISRXGPMCAEGQVVFQPPILGKYAFNSISTAPDPLIGFSAAANIDHS
FT                 STIMPLPGRTDVCSMEAPYPPATVEPFPPSIFSRPGPVCGVGDGVFQATTV
FT                 GKYIQNTNNAPAHSNVVSSALPNVVSITHNRGGNCNVSASSDSRSLCVYYQ
FT                 NVRGLRTKTAELNLRLSSCEYDIVVLTETWLRSDISNSELSSDYTIFRCDR
FT                 NATTSNLSRGGGVLVAVKSNLQCTEVSAPDCTELEQVAVCVKFPNRALTIF
FT                 GIYLRPNSDPRLYSIHSAAVQSVVDSSASNDVVLLFGDYNLPHLQWNFDED
FT                 VNGYLPSNASSEQEINFTESILSCGLVQINSIENRNNRILDLVFTNFSDIS
FT                 ELSQPVLPLLPVDDHHPPLVLQIDVCCSVTCHDEPEPDIFDLDFRRCDLSL
FT                 LNSILSSVDWNHQLLGLTVDESVGLFYDKIYEILRSTIPRHRRVNHGVDRK
FT                 PWWSPXLRNLRNRLRKTRKRYFANKTVENRNALCQVESSYNDLLDTSYRLY
FT                 LENLQLFAKTNPSKFWKHMKAQKMSNGIPNTIIYGDTKAATSVEAANLFAS
FT                 YFQSVYSTTSPQVYPGCFHNVQTYNIHIPPFQFSNREVLNALLNLDATKGA
FT                 GVDGLPPHLLKSCATSLVTPLTILYNRSLSEKTFPELWKTATMIPIHKSGS
FT                 IRLVDNYRGISILCCLGKLLESMVHKVMLSAANSVISEYQHGFLPHRSTTS
FT                 NLLCYTNMLFREVEQRKQIDSIYVDFSKAFDTVPHRYAVEKLRHMGFPDWL
FT                 TDWILSYLTDRKAYVRINTSRSTAFSIPSGVPQGSVLGPLIFVLFINDLCR
FT                 RFSSEKILFADDLKIFRVINSILDCVALQDDIHSLLQWCNENGMTLNINKC
FT                 KVISFCRSLTSIDYAYAISGTTLERVESIRDLGVIIDSKLRFNEHISAITA
FT                 KAFSVLGFIRRNASQFTDVYALKALFCALVRSILEYAVPVWAPYHTSQVIR
FT                 IERVQKSFIRFALRRLPWNDPVNLPDYSSRCELVDLELLSARRLKLQRLLV
FT                 HDILTGKIDCTDLLAEVQLNVPCRRLRYAPLIAIPMHRTNYGYNNPLTSCL
FT                 RNFNSVCEMFDFNLSKNCFKTRIKNIG"
XX
SQ   Sequence 3463 BP; 903 A; 863 C; 706 G; 986 T; 5 other;
     ccmactkmaa ctcaacaacc tgttcttcct tcaaaccacc gaatccggct ctgggacgca        60
     acattgttgg ctctttggaa gccaccgaac ctctcaccat agtcgtgcct tccttgccat       120
     cgctcatcag tcgtcmcggc cctatgtgtg ctgaaggcca ggtggtcttc caaccaccta       180
     ttctaggcaa gtacgctttc aattcaatca gtacagctcc tgatccactc attggtttca       240
     gtgccgctgc aaacatcgac cactcttcga ccattatgcc gttaccggga cgcacagacg       300
     tttgctcaat ggaagcccct tatcctcccg ccacagtcga gcccttcccg ccgtcgatct       360
     tcagtcgtcc tggtcctgtg tgcggggtcg gagatggggt cttccaagcc actacagtcg       420
     ggaagtatat tcaaaatacg aacaatgcac ctgctcattc caacgttgtt tccagtgctt       480
     tgcccaacgt agtgtcaatc acgcataacc gaggaggtaa ttgcaacgtc tctgcatcat       540
     ctgatagccg atctctctgc gtttactacc aaaacgtaag gggcttacga actaaaacag       600
     ccgaactgaa tctgcgatta tcaagctgtg agtacgacat tgttgttctt accgaaacgt       660
     ggctccgatc agatataagt aactcggaac tgtcttccga ttacacaata tttcgctgtg       720
     atcgcaatgc gactactagt aacctgtcga gaggaggcgg cgtgctcgtt gcagttaaga       780
     gtaatttgca gtgtacggaa gtgtctgcac ccgattgtac tgagctcgag caggtggcag       840
     tatgtgtaaa gtttcctaac cgtgcgctga ctattttcgg catttacctc cgtccgaatt       900
     ccgatccaag gctgtattcc atccactctg cggccgttca gagcgtggtc gactcttctg       960
     caagtaacga tgttgtgctg ctttttggtg actacaatct tcctcatctg cagtggaact      1020
     ttgatgaaga tgtgaacggt tacctgcctt caaatgcatc cagcgagcaa gagattaact      1080
     tcaccgaatc aatcttgtcc tgcgggcttg tacagattaa ttctattgag aaccggaaca      1140
     atcgaattct tgatttggta ttcacaaact tctcagacat atctgaactg tcgcagccgg      1200
     tcttaccgct cctgccagtt gatgaccatc atccaccgct cgttctacaa atcgatgttt      1260
     gctgctctgt cacctgccat gatgaaccag aaccggatat tttcgatctt gacttccgac      1320
     gttgcgatct ctccttgctc aattccatac tgtcctcggt tgattggaat caccaactac      1380
     tagggctaac cgtcgacgaa agtgtcggct tgttttacga caaaatctac gaaatacttc      1440
     gctcaaccat tccacgtcac cggcgcgtta atcatggtgt agatagaaag ccttggtgga      1500
     gtccccakct acgaaacttg cgcaacaggc tgagaaagac acgaaagcgg tatttcgcta      1560
     ataaaaccgt ggaaaatagg aatgcacttt gtcaagtgga atcctcttat aatgatcttc      1620
     ttgacacgag ctatcgatta taccttgaaa atctgcagct attcgccaaa acaaaccctt      1680
     cgaagttctg gaagcatatg aaggcccaaa agatgagcaa tggaatcccg aacaccataa      1740
     tctacggaga cactaaggcc gccacatccg tagaagcagc gaacctcttt gcgagctact      1800
     tccaaagtgt gtacagtaca acatctcctc aagtttaccc tggttgcttc cacaacgttc      1860
     aaacgtacaa catacatatc ccgcctttcc agttttccaa tcgagaagtg ttgaatgctt      1920
     tactgaattt ggacgccacg aaaggtgctg gagtggatgg gttgcctcct catctgttga      1980
     aaagctgtgc tacttcttta gtaacaccgt tgaccatact ttacaatcgg tctcttagcg      2040
     agaaaacgtt tccggaatta tggaaaactg ctacaatgat tcccattcac aaatcaggca      2100
     gcattcgtct tgtggacaat tatcgaggaa tctcaattct ctgttgcctc ggaaaactct      2160
     tggagtccat ggtacacaaa gtaatgctgt ctgctgctaa ctcggtcatt tctgagtacc      2220
     aacatggatt tctacctcat cgttcaacaa cttccaacct gctatgctac acaaacatgc      2280
     tgtttcgtga ggttgagcag cgaaaacaaa ttgactcaat ctatgttgat ttctcaaaag      2340
     cattcgacac tgtaccccat cgttatgccg ttgaaaaatt gcgtcacatg gggtttccag      2400
     attggttaac agactggatt ctgtcctacc tcactgacag aaaagcttac gtcaggatca      2460
     acacttctcg atccactgcc ttcagcattc cttcaggggt accacaaggc agtgtgctgg      2520
     gaccactaat ttttgtgctg ttcatcaatg acttgtgccg acgattttcg tctgaaaaaa      2580
     tattgtttgc tgatgatctt aaaatttttc gagtgattaa ctccatactc gactgtgtcg      2640
     ctctacaaga cgacattcat tcgcttctac aatggtgtaa tgaaaatggt atgacactca      2700
     acatcaacaa gtgtaaagtt atatcgtttt gccgcagcct tacctcaatt gactatgctt      2760
     acgctatatc cggaactact ctcgagcgtg ttgaatctat tcgggactta ggagtaatta      2820
     ttgactctaa attgcgtttc aatgagcata tttccgctat tacagctaag gcgttttccg      2880
     tgcttggatt catccgtaga aatgcatcgc agttcactga cgtatatgca ctgaaagcct      2940
     tgttctgcgc cctagtgcgc agtattttag aatacgctgt acctgtgtgg gcaccatatc      3000
     acacgtctca agtgattcgg atagaaagag tgcaaaaatc attcatccgc ttcgctcttc      3060
     ggcgcctccc ttggaacgac ccggttaact taccggatta ttcttcccgc tgtgagcttg      3120
     tggaccttga gctgctctca gctagaaggc taaaacttca aagactcctt gtacacgata      3180
     ttctgacggg taaaatcgac tgtactgatc ttcttgcaga agtacagctc aatgtacctt      3240
     gtcgtagact gcgttatgca ccactcattg ccatccctat gcacagaacg aactacggat      3300
     ataataaccc tctcacctct tgtttaagga attttaactc tgtttgtgaa atgtttgatt      3360
     ttaatttgtc gaagaactgt tttaaaacta ggattaagaa tataggttag tcatttagtc      3420
     tgtacgatat tattatcgaa gatgattata caataaacaa taa                        3463
//
ID   CR1-97_AAe  repbase;    DNA;    INV; 4745 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-97_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4745
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1185-1185 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity. Closely related to T1 and Q.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..1216
FT                 /product="CR1-97_AAe_1p"
FT                 /translation="MVSTCQSCANEITDAHVTCRGFCNEQFHLACCNITSS
FT                 VFDEVMGNGQLFWMCKTCSHLMNDIRLRESVRVAYESGQERVLTAHSEIVA
FT                 CLKQEILIELKNEIKSNFSKLINSSSMTPRSSKYSAPTVFSSRRRRLFGKP
FT                 ALPQPQSVIPGTSESLSPSFENFVATAPSQKFWLYLSRISRGVTSEQVRSL
FT                 VLRRLGTDDVEVVRLVAKNRDVNTLSFISFKIGLSANFKDRALSSSTWPRG
FT                 VYFREFQNLRSNENFWKPQVTPNQTDAIAVNPPINACSSAEDTSMMEQGNR
FT                 DAH"
FT   CDS           1228..4650
FT                 /product="CR1-97_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAFTLLDTVPPFAASDHRRRRGPVVESVVEVLQPAF
FT                 TGKYLNYRNLSLPDRHSDSRLCTIMHPSIHEASSSTTPLYINETYPHIISS
FT                 SSQSIPGRPQLSSMEASDPPSSVVPSVRAAIANQSQHTRSCRQSRPGPESS
FT                 AGDEVFQTAIHGMYPITIGNSRPDETSTHRSSSPEVNVANADSNILMYYQN
FT                 VGGINSSIAEYQLALSDGCYDVYAISETWLNGSTSSSQLFDSSFSVYRQDR
FT                 SASNSNKSIGGGVLLAVRSRIKSRIINPPNSSAIEQIWVAISTVDATLYVC
FT                 VIYIPPDRVNDAVLVERHIESVNWIVSQMGPRDNVVILGDFNLSTITWHRN
FT                 PSGVLFPNISRSSIGQTSRELLDGYSTARLNQMNGVENEYNRTLDLCYVSE
FT                 ELCANCTTLQAPAPLVKIARHHPPLLIKLEIDPFRCCHDSSESVSYDFSRA
FT                 NFDGMNDFFSRMNWDEILCDSDANLAASTLSGVLLYAIDQFVPVKSKCQPT
FT                 KPVWSNSVLKNLKRVKQAALRRHSKNRTDSTRVEYLEANTAYKQLNDRLYN
FT                 AYMDRLQSRLKTNPKSFWHYVNDQRKESGLPSTMSNGLIDADSTTSIADMF
FT                 RSQFSNVFTNEQLGPDDVVTATQNVPHFPAVGLQFAITNDAVVSAGKEMKS
FT                 STGCGPDGIPSLVIKRCINSLAAPLTTVFNLSLESGVFPYCWKQSYVIPVF
FT                 KKGCKRTVSNYRGIASLSATSKLLELIVLKNLVQCYSHYISQDQHGFIPKR
FT                 STTSNLTCFTSYLIRQIECGHQVDAIYTDLSAAFDKMNHQIALAKFDKLGM
FT                 NDRVLCWLRSYLTGRSMSVKIGDYVSPAFQVWSGVPQGSHLGPFLFLLYMN
FT                 DVNFILKCMKLSYADDLKLYFTIKQPRDAIFLQHQLESFAEWCRVNRMSLN
FT                 VSKCSVISFGRKHSLVHFDYALGDEQLKRESTVKDLGVLIDSKLSFKDHIA
FT                 YIIAKASSQLGFLFRFAKKFKDAYCLKSLYCSIVRPILEYSSVVWAPFYQN
FT                 EVHRIERIQRKFIRFALRHLNWRNPLNLPSYESRCQLIDLEPLVARRNVAK
FT                 ACFIGDLLQGNIDCSTLLGMLDINIRSRNLRSHSFFSIPSARTNYGQHEPI
FT                 RSMSRLFNKCYFVFDFNVSREANKRSFKRVFCY"
XX
SQ   Sequence 4745 BP; 1241 A; 1108 C; 992 G; 1404 T; 0 other;
     gttgattgtg ttccaaccgt cgctattttg ttatcgttgt tcgacttgtt gtatttatgt        60
     taaaatactt tctacttttg gattgtatat tttaaagcgt aaagtcgcgt gttccagtaa       120
     aagttaatag ttgactacct gataaccgtc aatagtgaat ttgccacatc atcatccagc       180
     cgacttgtag tgtcaacata ccagtcaaca tcaagcatcc ccgagctgtt gctgttgctc       240
     tcaattgttg catacaatac ggtgtacttc actgctgcag acctgtaggc gcatcttcat       300
     tcaacgctct aattacttgc gcacgagcat tatggtttcg acttgccagt cgtgcgcgaa       360
     tgaaatcacc gacgcgcatg ttacttgccg tggattttgt aatgaacagt tccatctagc       420
     ctgctgcaat atcacttcat ctgtcttcga tgaagtaatg ggaaacggtc aactgttttg       480
     gatgtgcaag acgtgttcgc acctgatgaa tgacattcgt ttgagagagt ctgttcgcgt       540
     ggcatatgaa tcaggccagg aaagagttct aactgcacac agcgagatcg ttgcatgttt       600
     gaaacaggag attttgatag agttgaaaaa cgaaatcaaa tccaattttt caaaactaat       660
     caactctagt tcaatgacac caaggtcttc gaagtattct gctccaacgg tcttctctag       720
     tcgtcgccgt cggctttttg gaaagcccgc tttgccacag ccacaatcgg ttatacctgg       780
     aacttcggaa tctttatcac cgtcatttga aaattttgtc gctacagctc ccagtcaaaa       840
     gttttggcta tacttatctc gcatctcgcg tggtgttacc tctgaacaag tgcgttcttt       900
     ggttttacgt cgcttaggaa cggatgatgt ggaagttgtc cgtctcgttg ccaaaaatcg       960
     agatgtgaac acgctatcgt tcatatcttt taaaattgga ctgagcgcaa attttaaaga      1020
     cagggcttta tcttcttcga cttggcccag gggagtttac ttccgtgagt tccaaaatct      1080
     ccgatcgaat gaaaattttt ggaaacctca agtgacaccg aaccaaaccg atgcaatagc      1140
     tgtgaatcca ccaatcaacg cttgctcatc agcggaagac accagcatga tggagcaagg      1200
     caaccgcgac gcacattaga aagcactatg gaggccttca cactactcga cacagtcccg      1260
     ccttttgcag ccagcgatca tcgtagacgt cgcggtcctg tcgttgagtc tgttgtggag      1320
     gtcctccagc ctgcttttac aggcaagtat ttgaattatc gaaacctctc cctgcctgat      1380
     cgacattccg attccagact gtgtactatt atgcaccctt ccattcacga agcttcatcg      1440
     tctacaactc cgttgtatat caacgagaca tatccgcaca tcatctccag ctcatcgcaa      1500
     tctatcccgg gacgcccgca actaagcagt atggaagcct cggatccgcc tagctcagtc      1560
     gtgccttctg tacgtgccgc catcgcaaac cagtcgcaac atacacgttc ctgtcgtcaa      1620
     agtcgtcccg gccctgagtc tagtgctggt gatgaggtct tccagactgc cattcatggc      1680
     atgtatccta ttactattgg taattctcgt cctgatgaaa cttcaaccca taggtcctca      1740
     tcacccgaag tgaacgttgc gaatgcagat tcaaatattc tgatgtacta ccaaaatgtt      1800
     ggcggaatta acagctccat tgccgaatac cagctggcac ttagtgatgg ctgttatgat      1860
     gtttatgcca tctccgaaac atggctgaac ggatctactt cgtctagcca actgttcgat      1920
     tcatcgtttt cggtttatcg tcaagaccga tcggcttcta atagcaacaa gagcatagga      1980
     ggtggtgtgt tgttggctgt gcgctctagg ataaaatccc gtatcatcaa tcctcccaat      2040
     agctctgcaa tcgaacaaat ctgggttgca atttcaactg ttgacgcaac actgtacgtt      2100
     tgcgttatct acatccctcc cgatcgtgtt aatgatgccg ttttggttga gcgccacatt      2160
     gaatcggtta attggatagt atcacaaatg ggacctaggg acaatgttgt catcctcggt      2220
     gacttcaatt tgagcacgat cacctggcat cgcaatccgt ctggagtcct cttcccgaac      2280
     atttcacgat cctcaatcgg tcaaacttcg cgtgagctgc ttgatggata tagtaccgcc      2340
     agactcaacc aaatgaacgg agttgaaaat gaatataatc gaactcttga tctgtgctat      2400
     gtgagtgaag aactgtgtgc gaactgcacg actttacaag ctcctgcacc tctcgtgaag      2460
     attgccaggc atcatccacc tctgctgata aaactggaga ttgatccttt tcgttgttgt      2520
     cacgacagtt ctgaaagcgt ttcctacgat ttcagtcggg ctaatttcga tggtatgaac      2580
     gacttctttt cacgtatgaa ctgggatgaa atactttgcg actccgacgc gaacctcgct      2640
     gcatcaacac tttctggtgt attgttgtat gctattgatc agttcgttcc cgttaaatca      2700
     aaatgccagc caaccaaacc agtatggtca aattctgtcc tgaagaacct caaaagagtc      2760
     aaacaggcag ctttgaggcg tcacagcaaa aatcgcacag attctacaag agttgaatat      2820
     ttggaagcaa atactgcgta taagcagctc aatgaccgac tctacaatgc ctatatggat      2880
     cgtctgcaaa gccggctcaa aactaacccg aaaagtttct ggcattacgt caacgatcaa      2940
     cgtaaggaat ctggattgcc ttctacaatg tctaacggat taattgatgc tgactccacc      3000
     acctctatcg ccgatatgtt tcgttcccaa tttagtaatg tttttaccaa tgagcagctt      3060
     ggaccggacg atgtagtaac tgccactcag aacgttcctc attttccagc tgtgggactg      3120
     cagttcgcca tcacgaacga tgcagtagtt tctgccggta aagaaatgaa atcctccaca      3180
     ggatgtgggc cggacggtat tccatcgcta gttatcaaac gttgtattaa ttcgcttgct      3240
     gcaccgctaa caacagtatt caatctctct ctagaaagcg gtgtttttcc gtattgttgg      3300
     aagcagtcgt atgtaattcc agtgtttaag aaaggctgta aaaggaccgt ctcgaactac      3360
     cggggtatag catctttgag cgctacctcc aagttgctgg aattgatcgt tttgaagaac      3420
     ttagtgcaat gctactcgca ttacatatct caagatcagc acggatttat tcctaaacgc      3480
     tcgacgacct ccaacctaac gtgctttact tcttacttga tacgccaaat tgaatgtggg      3540
     catcaggtag atgcaatcta caccgacctt tccgcagcct tcgataaaat gaatcatcaa      3600
     attgctctgg ctaagttcga caaattaggc atgaatgaca gggtcctatg ctggcttcga      3660
     tcctatctaa ctggccgtag tatgtctgtg aaaatcggcg attatgtttc tcctgcgttc      3720
     caagtttggt ccggtgtacc ccaaggcagt catcttggac cgttcctgtt cttgctatac      3780
     atgaatgacg taaacttcat tcttaaatgt atgaaacttt cgtatgccga tgacctgaag      3840
     ctatacttca cgataaagca accgcgtgat gctatttttc tgcaacatca gctggaatct      3900
     tttgccgaat ggtgtcgtgt aaatcgtatg tcactaaatg tatcgaagtg ctctgttatt      3960
     tcattcggcc gcaagcattc actcgtgcac tttgattatg cattaggaga cgagcagtta      4020
     aagcgtgaat caacggttaa ggatttggga gttctgatcg actctaaatt gtccttcaaa      4080
     gaccatattg cttacatcat tgctaaagct tcatctcagt taggtttcct ctttcggttt      4140
     gctaagaagt tcaaggatgc ctactgcttg aaatcgttgt attgttcgat cgtgcgtccc      4200
     atactggaat attcttcagt tgtctgggcc cctttttatc aaaatgaagt acaccgcatt      4260
     gaacggatcc agcgaaaatt tattcgtttt gcattacgac acctaaattg gagaaacccg      4320
     ctcaacctac caagttatga gagccgctgc cagctcatcg atttggaacc actcgtagcg      4380
     aggcgtaatg tggcgaaagc ttgttttatt ggagaccttc tgcaaggcaa tatagactgt      4440
     tctacattac tcggcatgct tgatataaac atacgcagca gaaaccttcg gtcacactcg      4500
     ttcttcagca ttccttctgc gaggacgaac tatggtcagc atgaaccaat acgcagcatg      4560
     tcccgtctat tcaataagtg ttattttgtg tttgatttta atgtgtcacg ggaagctaat      4620
     aagcgtagtt ttaaacgtgt attctgttat taagattttt tctatattgt acgtttagct      4680
     taagttttgt cattggggtg atttcttacc tgttgactaa atcaataaat aaataaataa      4740
     ataaa                                                                  4745
//
ID   CR1-98_AAe  repbase;    DNA;    INV; 4938 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   06-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-98_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4938
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1186-1186 (2011).
XX
RN   [3]
RP   1-4938
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity.
CC   [3]: Sequence corrected.
XX
FH   Key           Location/Qualifiers
FT   CDS           375..1169
FT                 /product="CR1-98_AAe_1p"
FT                 /translation="MENICAKCNQPITGIDSVTCRGYCGCVFHMTCSGATR
FT                 ALMNYFTSHRKNLFWMCDKCAILFENSHLRAITRHADEQSPLTSLTDAINN
FT                 LQTEIKKISAKPVSVQSPRYNRWPIIGESTRNNKRPREMDSFERSSSECQS
FT                 GRKQLNQNVISVPVTDKPADKFWLYLSRIRPDVTNDAITEMVKANLGLESD
FT                 PDVVKLVAKGADTSNMSFVSFKVGLDPALKNNALDPSTWPEGVMFRQFEDY
FT                 SSQKFRKLSNANYYPSPVTTLTTN"
FT   CDS           1257..4880
FT                 /product="CR1-98_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPTPPPQSSPSCTTFSRPGPVCRYGGGVFQSANHG
FT                 KYSHDSNSTDSDPPSGFRNESLIHIASSPTLTPGRNNESFMEAPTPPATVE
FT                 PFLPTTCSRPGPVCRYGGGVFQSANHGKYSHDSNSTDSDPPSGFRDESLIH
FT                 IASSPTLTPGRNNESFMEAPTPPATVEPFLPTTFSRPGPVCRYGEGVFQSA
FT                 NHGKYNHASNSTDSDPPSGFREESLNHFVSSSTLTLEGINAGFKDTPSPAI
FT                 TVQPSRTPINHPDRDHLFLSVYYQNVRGLRTKTTELRLMLSSCDYDVIVFT
FT                 ESWLRPDIRNSELTSDYALFRCDRSEATSDLSRGGGVLVAVKNELQCLGIS
FT                 LVGCTQLEQMAVCVKLPHRSVYICAIYLRPNSDVALYSTHASAVQHIADQC
FT                 SVNDVILVLGDYNLPRLQWIFDNDLNGFLPSNASSEVELSFTESISSCGLV
FT                 QLNPFVNANGNLLDLTFSSSPDVIEILQPPLPLLPIDAHHPPYVLQIDVHT
FT                 SMSDHVSARIDALELDFKHCDFDGLNNILSTVDWGNYLDGHSVDANLALFY
FT                 EKIYEVLDSNVPRYRCPKGCGYRKPWWNAELRNLRNKLRKVRKRFFSDKSV
FT                 ENKQMLRLVEGSYNELLIRSHQEYLIRLEENLKQNPKTFWKYVKSLRSSNR
FT                 VPNNVMLGNTTASSSKDAANLFSSFFKSVYSSTSPQPHPGCFRNVPSHNVH
FT                 LQRLNFTNDDILRALAKIDASKGAGVDGLPPAFVKNCAISLVTPLTLLFNR
FT                 SLEEKTFPSLWKTACMIPVHKSGSLNHVENYRGVSILCCIAKVFETLVHEV
FT                 LLNAVKPLVSDYQHGFVPHRSTTSNLLCYTTVLFREIEHRNQVDSIYIDFS
FT                 KAFDTVPHAYAVEKLKHIGLPDWIMDWIFSYLSERKAFVRVNSARSDEFEI
FT                 PSGVPQGSVLGPLIFVMFVNDLCSRISSGKLLFADDLKIFRVIASALDCNV
FT                 LQNDIDELLRWSNENGMRINIKKCKSISFSRCRNPIVHNYRVNSVQLERVE
FT                 SIVDLGVTIDNKLRFNEHVATMTAKAFSVLGFVRRNAAQLTDIYALKSLYC
FT                 ALVRSILEYASPVWSPYYASEVIRIERVQKQFIRFALRNLPWNDPLHLPHY
FT                 QARCRLINLELLSERRKKLQQLTIFDILCQNIDCAELLQQISFNVPQRPLR
FT                 NHAFIIIPGHRTNYGFNSPLSSCIRAFNTVSENFDFNLTKQSFKARLRY"
XX
SQ   Sequence 4938 BP; 1340 A; 1215 C; 1015 G; 1368 T; 0 other;
     ctggcatcac tgtatgttgt aataatcgat tgttgaccga gtgcaatctt tttattttgt        60
     ttttaaccat ttcattgtta cgttatttgt gaatcatcgt ttttttcact tttggtgtta       120
     ccatttcggc aacgtgattg gagttcgtct ataataccgt attaaaagtg ttaaataagt       180
     gtttttattt tcggtgatag tgcatacaaa actctactcc tgccacctcc tcccgctcaa       240
     tttttttcgt gcgaagcgac atcttgcggg aataatttga agcagaagtt gtgtgcaact       300
     ttccatcaaa cattcgagca catcaacgtt atttccatag tctacccaaa ggcgtttctg       360
     caacacccgg agacatggag aacatttgcg ccaaatgcaa tcaacccata acgggcatcg       420
     attcagttac ctgtcgtgga tattgcggct gcgtgtttca catgacatgt tctggcgcga       480
     cacgtgcgtt aatgaattac ttcacgtcac atcggaaaaa tcttttttgg atgtgtgaca       540
     aatgcgcaat cttgttcgag aattcccatc tccgggctat aacgagacat gctgatgaac       600
     aatcacctct gacttcgctt acggatgcta tcaacaacct ccaaacggaa atcaaaaaaa       660
     tctcggcaaa acctgtatca gtacaatcgc caagatacaa tcgctggccg attattggtg       720
     aatccacgcg caataacaaa cgacctcgtg aaatggattc atttgaacgc tcctcttcgg       780
     aatgtcaatc cggtcgtaag caacttaacc agaatgtaat ttccgttcct gttactgata       840
     aaccagcgga caagttctgg ctttatctct ctcgcatcag acctgatgta acgaatgatg       900
     caatcacaga aatggtaaaa gctaatttag gattggaatc tgatcctgac gtcgtgaaac       960
     tcgtggccaa aggcgctgac accagcaata tgtcattcgt ctcattcaaa gttggtctcg      1020
     atccagcttt gaagaataat gcccttgatc cttctacttg gcctgaggga gtcatgttcc      1080
     ggcaatttga ggactacagt tctcaaaaat ttcggaagct ctccaatgca aattactatc      1140
     catctccggt aacaaccttg acgacgaact aactgctcaa atatctcctg acgaagttct      1200
     caaccatcat ctccatcgca tcaaacctgt ttcactggga cgcaacaacg aaagctatgg      1260
     aagccccaac tcccccgcca cagtcgagcc cttcctgcac gaccttcagc cgtcctggtc      1320
     ctgtgtgtag gtacggagga ggggtcttcc aatcggcaaa tcacggcaag tacagtcatg      1380
     attcgaatag tacggattct gatccaccat ccggtttcag aaacgaatcg ctcatccaca      1440
     tcgcttcatc accaacgctg acaccgggac gcaacaacga aagctttatg gaagccccaa      1500
     ctccccccgc cacagtcgag cccttcctgc caacgacctg cagccgtcct ggtcctgtgt      1560
     gtaggtacgg aggaggggtc ttccaatcgg caaatcacgg caagtacagt catgattcga      1620
     atagtacgga ttctgatcca ccttccggtt tcagagacga atcgctcatc cacatcgctt      1680
     catcaccaac gctgacaccg ggacgcaaca acgaaagctt tatggaagcc ccaactcccc      1740
     ccgccacagt cgagcccttc ctgccaacga ccttcagccg tcctggtcct gtgtgtaggt      1800
     acggagaagg ggtcttccaa tcggcaaatc acggcaagta caaccatgct tcgaacagta      1860
     cggattctga tccaccttcc ggtttcagag aagagtcgct caaccacttc gtttcatcat      1920
     caacgctgac actggaaggc atcaacgcag gcttcaagga cacccctagc ccagccatca      1980
     cagtgcaacc ctctcgaaca ccgatcaacc atccagaccg tgaccaccta tttttgtccg      2040
     tctactatca aaatgttcgt ggtttacgta ccaaaacgac agaactaagg ttaatgttat      2100
     cttcctgtga ttatgatgta attgtgttca ctgagtcgtg gctccggcct gacatacgca      2160
     actcagaact aacaagcgat tatgcattat ttcggtgcga cagaagtgag gcgacaagtg      2220
     acctttcgag aggcggtggc gtccttgtag cagtgaaaaa tgaattgcaa tgcctcggta      2280
     tatctctagt tggttgcaca caactcgagc aaatggcggt gtgtgtaaaa ttaccccatc      2340
     gttcagtgta catctgtgct atttatctac gtccaaattc cgacgtcgct ctatattcga      2400
     ctcatgcctc ggctgtacag catatcgctg accaatgctc ggtgaacgat gttattctgg      2460
     ttctgggcga ttacaacctt cctcgtttac aatggatctt tgacaacgac ctcaatggtt      2520
     ttctgccttc aaatgcatcc agcgaagttg aattgtcatt cactgaatca atttcgtctt      2580
     gtggattggt acagttgaat ccatttgtca atgcaaacgg caatttgctt gatctaacct      2640
     tctcgtcctc tcccgatgtc atcgaaatat tgcagccacc gcttccgtta ttgcctattg      2700
     atgctcatca tccaccttac gtgcttcaaa tcgatgttca tactagtatg tccgaccacg      2760
     tttctgcacg catcgatgcc ctggaactgg atttcaaaca ctgtgacttt gatgggctca      2820
     ataatattct gtcaactgtt gactggggga actacctgga cggccattcc gttgacgcta      2880
     accttgcttt gttctacgaa aaaatatacg aagtgttgga ctcgaacgtg cctcgttatc      2940
     gatgccccaa aggctgcggc tacagaaagc cttggtggaa tgctgagttg cgtaatttgc      3000
     gcaataagct gagaaaagtg cgtaaacgtt tcttttccga taaatctgtg gaaaacaaac      3060
     aaatgctacg cctcgttgag ggttcctaca atgaactact tatccggagc caccaggaat      3120
     atttgatcag attggaagaa aatttgaaac aaaatcccaa gacgttttgg aagtacgtga      3180
     agtcgctaag gtcaagcaac cgagtaccaa ataacgtgat gctcggaaat actactgcta      3240
     gctcttccaa agatgctgca aatcttttct ccagtttttt caaaagtgtt tacagctcaa      3300
     cgtcccctca accacatcct ggatgcttca gaaatgtgcc gtcccacaac gtgcacctcc      3360
     aacgtctcaa ctttaccaac gatgatatac taagagcact agcgaagatc gatgcttcga      3420
     agggagctgg agttgatggg ttgccacccg cctttgtgaa aaactgcgcc atatctttgg      3480
     tcacacctct tacgctgctc ttcaaccgtt ccttggagga aaaaacattc ccaagtttgt      3540
     ggaaaactgc ttgcatgatc cccgtgcaca aatcaggcag cttaaaccac gtggagaact      3600
     atcggggtgt atcaattctc tgttgtatag ccaaagtctt tgagacgcta gtgcacgaag      3660
     ttttgcttaa cgctgtgaaa ccgctcgtct ccgattacca acatggtttc gttccacatc      3720
     gttcgacaac ctctaacttg ctatgttaca cgaccgtact gttccgagag attgagcatc      3780
     gaaatcaagt cgattctata tatattgact tttcaaaagc gttcgacacc gttccgcatg      3840
     cgtatgcagt agaaaagctg aagcacatag gactaccgga ttggattatg gactggattt      3900
     tttcatactt gtctgagcga aaagcatttg tccgggttaa ctcagcacgc tccgatgaat      3960
     tcgaaatacc gtctggagta ccacaaggca gtgtgttggg tcctctcatc ttcgtaatgt      4020
     tcgtaaacga tctctgttct cgaatttcct ccgggaagtt actttttgct gatgatctaa      4080
     aaatattcag agtgatcgcg tcggctcttg attgcaacgt tctccagaac gacatcgatg      4140
     agcttttgcg gtggagtaat gagaatggca tgcgtatcaa cattaaaaaa tgcaaatcga      4200
     tctcttttag tcgatgcaga aatcctattg tgcataacta ccgtgtcaac tccgttcagt      4260
     tagaacgagt tgaatctata gtggacctcg gtgtgactat agataacaaa ctccgcttta      4320
     atgagcatgt tgccacaatg actgccaagg ctttttccgt actcggcttc gtccgacgta      4380
     atgctgcaca actaacagat atatatgcac taaaatcact atattgtgcc ctggtgcgaa      4440
     gcatcctgga gtacgcatcc cctgtttggt cgccatatta cgcatcggag gttattcgca      4500
     tagaacgtgt acaaaaacag tttattcgtt ttgcgcttag aaatcttcct tggaatgatc      4560
     ctttgcatct tccacattac caagcacgct gtcgccttat aaatttagag ctactctcgg      4620
     aaagaaggaa gaagttgcaa cagttgacaa tattcgacat cctatgccaa aacattgact      4680
     gtgctgaatt attgcagcag atttcattca atgtacctca gcggccgtta agaaatcacg      4740
     catttattat aattcctggg catagaacaa actacgggtt caacagtcca cttagttcat      4800
     gcattagggc ttttaacact gtaagtgaga actttgactt caatttgaca aagcagtcct      4860
     tcaaagctag gttaagatat tagattaggt tagtctgtac gattttatcg aagaccatat      4920
     acaataaata aataaata                                                    4938
//
ID   CR1-99_AAe  repbase;    DNA;    INV; 4886 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-99_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4886
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1187-1187 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..1178
FT                 /product="CR1-99_AAe_1p"
FT                 /translation="MAKPCAKCCDAITGFDYVICRGYCGGVFHMNNCTNVT
FT                 RALSSYFTTHKRNLFWMCDSCADLFENSHFRTISAKADAQSPLASLTTAIT
FT                 ELRTEIKHLNAKPTAQAPTPGNNRWPPLEMRRATKRPRDIETVGLPSEQCR
FT                 IGSKQASENVVTVPMCSDSTDKKFWLYLSRIRPDVTNEMICAMVKENLAMD
FT                 DEPDVVKLVPKGKDISTLSFISFKIGLDPSMKTPAMDPTNWPEGLLFREFE
FT                 DYGIPKFRMPLKTRKPNTPLILPQNPSSPATPVMDLS"
FT   CDS           1444..4827
FT                 /product="CR1-99_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPNPLIAVEPFQPAFTSHSGPAFEFGGGVFQTSNT
FT                 GKYACVMNHSLPELSTVCRFSSHLQATNQSATTASLTLDESRSSSSQLESI
FT                 IPRREPGRNVAACTKEAPIPLNSVEPLLPATHSRPGPVVELEDGVFRNPTI
FT                 GKYMYPEPLFVPDGISISSVTTSNFTQPVATIRGTQNTEAQHLLTLYYQNV
FT                 RGLRTKLEDLRLALSSCDYDILVFTETWLRPDICDLELSSEYCFFRCDRNE
FT                 LTSEFLRGGGVLVAVKTNLCCSSVSLSDFNQLEQVAVRVKLPNRSVYISCI
FT                 YIRPNSSPDLYWSHCNAVLSIFDQLDDSDFLVVLGDYNLPHLRWRFDEDLA
FT                 AYLPVNASSEQELALLESLPAHGLLQVNRLTNINERLLDLAFVNSSDVVEL
FT                 VDPPQSLLPVDPHHKPFLMLLDMHTSMEEQRVTSMEMDFRHCNFDNLNDVI
FT                 ASVDWQFGEGAVDYKMSCFYDQLNEIFDAHVPRARRVSHGPLRRPWWTAEL
FT                 RNSRNMLRKSRKRFFKTRSSTNYTNLRNMESSYKNLLAVTYREYIQKLERD
FT                 LKQNPTAFWKYVRSLKANPKIPTNIVFGGVTANSDAEAAGLFAKFFQSVYS
FT                 ADAPTAHAGCFEKVPTYDINIPELSFSVENVRKALEDVDESKGAGVDGLPP
FT                 LFLKKCASSLALPIASLFNQSLRDRTFPKAWKAARIVPIHKSGSSNHVENY
FT                 RGISILCSLGKVFESMVRDALYRTVHSVISEHQHGFVEHRSTTTNLMCYSS
FT                 VLFKEIEQRKQVDSIYVDFSKAFDVVPHVYAVEKLKHMGFPEHITGWLLSY
FT                 LTHRKAAVFVNSASSDEFPIPSGVPQGSVLGPLIFTLFVNDVCYRLRSPKQ
FT                 LFADDLKFYRVIESTIDCLALQNDIDDLLLWCNQNGMQINISKCRVISFTR
FT                 RRNVMNYQYTIGNRSLERSDTIRDLGVTFDSKLRFHEHISNMTAKAFSVLG
FT                 FIRRHTSNFTDVYTLKTLFCSLVRSILEYAVPIWAPYQATHIIRIERVQRK
FT                 FIRFALRQLPWNDPVNLPDYQARCRLIGLETLSDRRKNSQRLFVFDVLEGN
FT                 TDCPELLEQTNFQVPSRNLRSYPAISVPFHGTNYGQHSSYSSCLRAYNEVS
FT                 RLHDFGMSKTHFKSRIRRLE"
XX
SQ   Sequence 4886 BP; 1330 A; 1134 C; 1052 G; 1370 T; 0 other;
     aattttacat attttattgc tgaactttgt gttctaaaat tacttttgtg cgttctcgtg        60
     ttgtatttta ccgacagttt gcgtgtttca ctacagtttc ggtcggtcgt gcccccgttt       120
     cactaatttg atagtgtatt ttaaagtgtt caattcgcgt tgtgtttata aaattggaca       180
     gctcactacc tccacgttaa ttgtttttcc gagaagcgac atctaccggt aaacgagtgg       240
     aaacaacacg gcatattcag catattcagc gtttttttgt catcgaagaa gctttcttgc       300
     atccaagtta ccactgtgta gtctacgtaa aggcgcaata agcaatggca aaaccttgcg       360
     caaagtgctg tgatgccatc accggctttg attacgtcat ttgtcgtgga tactgtggtg       420
     gagtttttca catgaataat tgtacgaatg tcacacgtgc actatcatca tactttacga       480
     cgcataagag aaatttattc tggatgtgcg atagttgtgc tgacttgttc gaaaattcac       540
     attttcgaac aatttcagcc aaggcagatg cgcaatcccc attggcctcg cttaccacgg       600
     caatcacaga actgcgcacc gaaatcaaac atttgaacgc aaaaccaact gctcaagcac       660
     caacacctgg aaataaccgt tggccgccac tcgaaatgcg tagagccaca aagcggccac       720
     gtgatattga aactgttgga ttaccatccg aacaatgtag aattgggagc aaacaagcct       780
     cggaaaatgt tgtcacggtg cctatgtgta gcgactctac ggacaagaaa ttttggcttt       840
     atttatcaag aattaggccg gatgttacaa acgagatgat atgcgctatg gttaaagaaa       900
     atctcgctat ggatgatgaa cccgacgtcg tgaagcttgt tcccaaaggg aaagatatta       960
     gcacgctgag ctttatttcc tttaagattg gattggatcc atcgatgaaa actccagcta      1020
     tggatccaac taattggccc gaaggactgt tgttccgtga gtttgaggat tatggaatcc      1080
     caaaatttcg gatgccatta aaaaccagaa aaccaaatac accattgatt ttgccgcaaa      1140
     atccatcgtc tcctgctact ccagtaatgg atctcagtta gataacttca tcccgggacg      1200
     caccagttat tgcatgatgg aagccccgta tcctcccaac acagtcgagc cattcctgcc      1260
     agcgaccaac agtcgtcccg gtcctgtgtt tgggtctgga gaaggggtct tccaccctca      1320
     ttcgcgggca agtactcttt tcacatcaat ttttcgccac ttgatgaatc caccgcttct      1380
     agtcaaccga catcgatatc gtttctcacc aacctgtcac cggaatgcaa gcctgtcagt      1440
     tgcatggaag ccccaaatcc actcatcgca gtcgagccct tccagccagc gttcaccagt      1500
     cattccggtc ctgcgtttga gttcggagga ggggtcttcc aaacttcgaa tacaggcaag      1560
     tacgcatgcg ttatgaacca ttcgcttcct gagctttcca ccgtttgcag attttcctcc      1620
     catctccaag caacaaacca atcagccact actgcgagcc ttactttaga cgaaagtcgg      1680
     tcttcatcta gccaactgga atccatcatt cccagacgtg aaccgggacg caatgttgcc      1740
     gcttgtacta aggaagcccc tattcctctc aactcagtcg agcctctcct gccagcgacc      1800
     cacagtcgtc ccggtcctgt agttgagttg gaagacgggg tcttccgaaa tccaacaata      1860
     ggcaagtaca tgtatccgga gcccttattt gtgcctgatg gaatttcaat ttccagcgtg      1920
     actacttcca actttactca gccagttgcg acaatccgtg gcactcaaaa tacggaagca      1980
     caacacctat tgacactata ttaccaaaat gtacgaggct tgcgaaccaa gttggaggac      2040
     ctgcggttgg cgctctctag ctgcgattac gatatactag tctttaccga gacatggctc      2100
     aggcccgaca tatgtgattt ggaattatca tctgaatatt gctttttccg ttgtgaccgc      2160
     aatgagctta ctagtgaatt cctacgaggt ggaggagttc ttgttgctgt aaaaactaat      2220
     ctgtgttgct catctgtatc gctgtctgac ttcaatcaac tggagcaagt tgctgttcga      2280
     gtcaagcttc caaatcgctc ggtgtacatt agctgcatat acatacggcc aaactcaagc      2340
     cccgatctgt actggtctca ttgtaacgca gttctttcca tctttgatca gcttgatgac      2400
     tctgattttt tggttgtgct aggggactat aaccttccgc atctccggtg gcggtttgat      2460
     gaagacctcg ctgcatatct acctgttaat gcttcgtctg agcaagagtt agcacttcta      2520
     gagtcactcc cggcgcatgg tttgttacag gttaaccgac tcacaaacat taatgaacgg      2580
     ttacttgact tggcgtttgt caactcatca gacgtagtgg agttagttga tccaccacag      2640
     tcgctactac cagtggatcc tcaccataaa ccatttctta tgttgttgga tatgcacact      2700
     agtatggaag aacaacgcgt aacttcaatg gagatggact ttaggcattg taattttgat      2760
     aatctgaacg atgtgattgc ttccgttgat tggcagtttg gtgagggggc tgtcgactac      2820
     aaaatgtcat gcttttacga tcagcttaat gaaatattcg atgcgcatgt cccacgagct      2880
     cgtcgcgttt cccatggacc cttgcgaaga ccttggtgga cggcggaact cagaaactcg      2940
     aggaacatgc ttcgtaaatc gaggaaacgg ttcttcaaga cgaggtcctc gaccaactat      3000
     acaaatcttc gaaatatgga atcgtcttac aagaatttgc tagccgtcac ttacagagaa      3060
     tatattcaga agttagagag agatctgaag caaaacccga cggcattctg gaaatatgtc      3120
     aggtctttga aagcaaatcc taaaattcca acaaatattg tgtttggcgg agtgactgcg      3180
     aattcggatg ctgaagcagc aggacttttc gccaagttct ttcagagtgt ctacagcgca      3240
     gatgcgccta cagcccacgc gggatgcttt gaaaaagtac caacgtacga tatcaacatt      3300
     cctgaactaa gtttttcagt agagaatgtg cggaaagctc tggaagatgt cgatgaatca      3360
     aagggtgctg gtgtggatgg tttgcctcct ttgtttctga agaaatgtgc ctcctctttg      3420
     gctttgccta tcgctagtct ctttaaccag tcgctcagag ataggacttt tccaaaagcc      3480
     tggaaagcag ctcgaatagt acctatacat aaatcgggca gctcaaatca cgtcgaaaac      3540
     tatcgaggaa tttctattct ttgctctctc ggaaaagttt ttgaatcaat ggttcgagat      3600
     gcactgtata gaacagtcca ctcggtgatt tctgaacacc aacatggttt tgtagagcat      3660
     agatcaacga cgacgaacct tatgtgctat tccagtgtgc ttttcaaaga gattgagcag      3720
     agaaagcagg ttgattcaat ttatgttgac ttctctaagg cttttgatgt tgttccacac      3780
     gtgtacgccg tcgaaaagct gaagcacatg ggatttcctg aacacatcac tgggtggctt      3840
     ctctcatacc tgacgcatag aaaagcagca gtgttcgtga attcagcttc atcagatgaa      3900
     tttcccatac cgtctggcgt accacaagga agtgtacttg gaccactcat cttcactctt      3960
     ttcgtgaatg acgtgtgcta ccgactcagg tccccgaagc aattgtttgc agatgatctt      4020
     aagttctaca gagtgatcga atcaacaata gactgtcttg ccctgcaaaa tgacattgat      4080
     gaccttctac tgtggtgcaa tcagaacggg atgcagatca acatatcgaa atgccgagtg      4140
     atttcgttca cgcgtcgtcg aaatgtaatg aattaccagt acaccatcgg taaccgctcg      4200
     cttgaacggt ccgacaccat ccgtgactta ggtgttacat ttgactcgaa actacgtttt      4260
     catgaacata tttcaaatat gacagccaaa gcattttcgg ttcttggatt cattcggaga      4320
     cacacatcaa atttcactga tgtttacaca ttgaaaacgc tcttctgttc gttggttcga      4380
     agcattctcg agtatgcagt accaatatgg gctccttacc aagcaacgca catcatccgc      4440
     atagagcgag ttcagcggaa atttattcga ttcgccttgc gccaacttcc gtggaatgac      4500
     cctgtaaatt taccggacta tcaagcgcgt tgcaggctta ttgggctgga gactttgtca      4560
     gatcgacgga aaaacagcca acgattgttc gtttttgacg ttcttgaggg aaacaccgat      4620
     tgtccagagc ttttggaaca aacaaacttt caagttccat cacgaaacct gcgcagctat      4680
     cccgcgatta gtgtaccatt ccatggaact aactatggac aacacagtag ctacagttct      4740
     tgtttaagag catacaatga agtaagcaga ttacatgact ttggtatgtc gaagacgcat      4800
     tttaaatcta ggataaggag attagaataa gaacagtctg tacaattttt ataattgaag      4860
     acgaagtaca aatacaaata caaata                                           4886
//
ID   CR1-9_AG    repbase;    DNA;    INV; 4397 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-DEC-2013 (Rel. 18.12, Last updated, Version 3)
XX
DE   CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_AG.
XX
NM   CR1-9_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4397
RA   Jurka J.;
RT   "CR1-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 635-635 (2009).
XX
RN   [2]
RP   1-4397
RA   Bao W. and Jurka J.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2013).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           230..4294
FT                 /product="CR1-9_AG_1p"
FT                 /translation="MEGVCCDCSVPLESLECGIMCSFCDAVYHSACTKSPF
FT                 TVIEEVKRTASLHWSCVGCSNALGNPHSKAVKTTGMQVGFQAALTAAVEVM
FT                 KAALVPPVMHEIREGFASFAAAHQAPSEHFNVPPPDALPSGKRRRLFRDVV
FT                 ASTEAIVVDNAPLYPVNTDTDNTHQRNRPSLPPIITGTDTTTTSIPTVSQL
FT                 PRTNYMWLHLSRLAKTVTVDQVVSMVKSQLDTTDVIAFSLLKAGTTISSVS
FT                 SLTFKVRIIAALRDKALTAGSWPVGLGVREFISLPQRPSHHRPDLTNTNTP
FT                 IPVRHSPMHPVQLSPDMNCTLISPAPQKQLQPHQTPLKCTKLLFNTFFLSN
FT                 NHTTVSSKGTVPLNLTSHLFTRNNNTSTTRSLTDDLAPTYTRIPLNVRSTS
FT                 ITVYYQNVRGLRSKADEFRLTVLEADYDVVVLTETWLDPSLPTALLFGDAH
FT                 CVYRCDRNAANSSLSRGGGVLIAVSSALRSHALPVLAQTLEFACICIQLPT
FT                 YRLYIAAAYLPPNHSTDEGKINALLDTVNSICDTLGPNDRFVLVGDFNQPA
FT                 LSWSPAQSNHETPFVFFEPHTSSVRSAQFVDGLHQNALYQLNNNTNSMGRI
FT                 LDLAYGNWSSAATSSLIRVSEHPLLPIDCYHPPLEFDLEITASSMNHATTV
FT                 TEIKLNYARADLTKLKRLICSFNQSFECSNYTSIDHATNDFSEFMRAALRE
FT                 CAPIKKPHRGPPWGDRTLHALKKAKRAAYDYLRANRSTPCRLYYNGAHALY
FT                 RRYNRVCYRRYIRQTERSLRKYPRRFWSFADNMRKSTGLPGTIRYKDNCAH
FT                 SPLDICELFATRFEDSFISNITPPEAVASALVNTPADAIHVTLPIVTETLV
FT                 TQKIERLKSSYSEGPDGIPATILKRCAVSVAPVLTKIFNESLRTGTFPSLW
FT                 KVSWLTPIHKKGSKNEAVNYRGITSLAACAKVFELIIYEPLMASAGKYIST
FT                 NQHGFMPKRSTTTNLMQFVSGCYKSIDDGMQVDAIYTDIKAAFDSVSHNIL
FT                 LAKLDRLGLSPPLVKWMKSYLCGRSYAVRMGSHQSRSIGASSGVPQGSNLG
FT                 PLLFLLYISDLCTALPDNSCLLYADDAKIYREIREPEDHLQLQATLTEFVS
FT                 WCKRNALSVCIDKCAIISFSRSRAPALFNYTLDGQNLERVNCVKDLGVLLD
FT                 AKLSFEEQIDQVVASGNRLLGLVINMTRELRDPMCFKTLYCALIRPLLEYA
FT                 SIVWWPASTRALARLESIQRKATRFALRDWPRRLDYRTRCLLLGIPPLAER
FT                 VEHTRLAFITGILNGTIDCPELLSRIHLYVPARILRRRPMLAVAETRTTFG
FT                 SRNPLLCMCRLLNSANDIYEPGMTITELTSLLSVRNAFNNNNI"
XX
SQ   Sequence 4397 BP; 1137 A; 1172 C; 916 G; 1168 T; 4 other;
     ttgacagttg acagctgacg acwgagtgtg ttttctcact gtgctccgcg taaatccgtg        60
     aattattttg tcgtttcggc ctwattttcg tcaaactgcc gcttagctgt gacttaagct       120
     gtccctggta gtcctgcctt caatcgttcg tcacaaccat tcctgacttt gctgtatttc       180
     ctgcgtttgt tcctgagtcc tgtggcatct atctgcaacg gcaactaaaa tggagggagt       240
     ttgttgtgac tgctctgtgc cacttgaatc gcttgagtgt ggtattatgt gctcgttctg       300
     tgatgctgta tatcactcag cgtgcactaa atcacctttc actgtgatcg aagaggtaaa       360
     acggacggca tctcttcatt ggagctgtgt agggtgttcg aatgctcttg gcaacccaca       420
     tagtaaagca gtcaaaacaa cgggtatgca ggtcggcttc caggcggctc ttactgccgc       480
     tgtcgaggtg atgaaagctg ctttagtccc gcctgtgatg cacgaaatcc gtgagggctt       540
     tgccagtttt gccgcggctc accaagctcc tagcgaacac ttcaacgtac cgcccccaga       600
     tgccctcccg agtggaaagc gtagaaggtt gttccgtgac gttgttgcat ccacggaagc       660
     cattgttgtt gacaatgctc cactataccc tgtaaataca gacaccgaca atactcacca       720
     aagaaatcgc ccttcactac caccaataat aacaggaacc gataccacca ccacgtcgat       780
     cccaaccgtg tcacaactac caagaacaaa ctatatgtgg ctacatctat ctaggttagc       840
     caaaaccgtc accgttgacc aggtagtgtc gatggtaaaa tcacagttgg acaccacgga       900
     cgtcatcgct tttagtttgc tgaaagcggg aacaaccatt agctcggtta gttcactaac       960
     ttttaaggtt agaattatcg ctgctcttcg agataaagca cttaccgcag gatcttggcc      1020
     ggtcgggctc ggtgtgcgtg agtttatctc actcccgcaa aggccgtctc accatcgtcc      1080
     tgatcttacc aacacaaaca cacctatacc tgttcgacat agcccgatgc accctgtaca      1140
     attatcaccc gatatgaatt gtaccttaat atcgcctgct ccacaaaaac aactacagcc      1200
     acaccaaaca ccgttaaaat gcaccaaact actattcaac acttttttct taagtaayaa      1260
     tcacacaact gtttcctcaa aaggcactgt gccactgaat ctgactagtc atttgtttac      1320
     acgaaataac aacacgtcaa cgacacgatc tctcaccgat gaccttgcac cwacttacac      1380
     acgcatacca ctcaatgtcc gttccacgtc tataactgta tactatcaga atgtgcgagg      1440
     tttacgatcc aaagctgatg agttccgttt aactgtttta gaagcggact atgatgttgt      1500
     ggtactcact gagacttggc tcgatcccag ccttcccaca gctctcctat ttggcgatgc      1560
     gcactgtgtc tatcgttgcg atagaaatgc cgcaaacagc tctctatctc gaggcggtgg      1620
     agtactaatt gcggtgagtt ccgctctccg ctctcatgcg cttccagtgc ttgcgcaaac      1680
     acttgaattc gcttgcatct gcattcagct cccgacgtac cgattataca ttgctgctgc      1740
     ctaccttcct cccaaccata gcacggacga aggaaaaata aatgcattac tggacaccgt      1800
     caacagcatt tgcgacacac taggtccaaa cgacagattc gtgctcgtgg gagactttaa      1860
     ccaacccgct ctttcctggt cgcctgcgca atcgaatcat gaaacccctt ttgtgttttt      1920
     tgaacctcat actagttcag ttcgtagcgc ccaattcgtc gatggactgc accagaatgc      1980
     gctttaccaa cttaataaca acactaactc tatggggcgc attttagacc ttgcatacgg      2040
     gaattggtca agtgcagcaa cttcttcgct catacgcgtc agcgagcacc cgctgctgcc      2100
     aatagactgc tatcacccac cgctcgaatt tgatttggaa atcacagcat cgtctatgaa      2160
     tcacgctacc actgttacgg aaataaagct caattacgca cgtgctgacc ttactaaact      2220
     caagagactg atctgctcct tcaaccaatc ctttgaatgc tcaaactata catccattga      2280
     ccatgccacg aacgatttct cagagtttat gcgggccgca ttgcgtgaat gtgctcctat      2340
     taaaaagccc catcgcggac cgccgtgggg tgaccgcaca ttacatgccc taaaaaaagc      2400
     aaagcgagcc gcttatgact atttacgcgc taatcgatcc acaccgtgtc ggctttacta      2460
     caatggtgct catgcacttt atcgacgtta taatagagtc tgctatcgtc gatatatacg      2520
     ccagactgaa cgaagcttgc gaaagtaccc tcgccgcttt tggagctttg ccgacaacat      2580
     gcgcaagtca actggcctcc ccgggactat tcggtataag gataattgtg cacactcgcc      2640
     attagatatt tgtgaactgt tcgccacgcg tttcgaggat agcttcatct ctaacatcac      2700
     acctccggag gctgttgctt ccgcgctcgt gaacactccg gcagatgcaa ttcatgtcac      2760
     gctacctatc gtcaccgaga ccctggttac ccaaaaaatc gagcgtctaa agtcgtcata      2820
     ctccgagggg ccagatggta tcccagcgac aattctcaag cgttgtgccg tatcggtagc      2880
     tcctgtttta actaagattt ttaacgaatc tctgcgcaca ggaacctttc catcactgtg      2940
     gaaggtctct tggctaacac ccatccacaa aaagggcagc aaaaacgaag cagtgaacta      3000
     tcgaggtatt acctctttag ctgcctgcgc caaagtgttc gagctaatca tctatgaacc      3060
     attaatggca tctgccggca aatacatcag cactaaccaa catggattca tgcctaagag      3120
     atcaactacg acaaatctga tgcaattcgt tagcggctgt tataagtcca ttgatgatgg      3180
     tatgcaggtt gatgccattt acacggacat taaggcggct tttgacagtg tgtcccacaa      3240
     cattcttctg gcaaaacttg atagacttgg attatcacca cccctggtaa agtggatgaa      3300
     atcgtattta tgtggtcgtt catatgcagt tagaatgggc tcccaccaat ctagatctat      3360
     cggtgcctct tccggcgtac cccagggcag caacctgggg cctctgttgt ttctgctcta      3420
     cataagcgac ttgtgcacgg cactcccgga taacagttgc ctactctacg cagatgatgc      3480
     taaaatctat cgtgaaatcc gtgagcccga ggaccatctt caacttcaag ccactttgac      3540
     tgaatttgtc tcctggtgca agcgtaatgc actaagcgtc tgtatcgata aatgcgccat      3600
     aatctcattc agccgttcaa gagctccagc gctgtttaat tatacgcttg atggtcagaa      3660
     cctcgaaaga gtgaactgtg taaaggatct aggagtcctc ctagatgcta aactctcctt      3720
     cgaagaacag atagaccaag tagtcgctag tggcaatcgt ctacttggct tggtcataaa      3780
     catgacgcgc gagcttcgtg atcctatgtg tttcaagaca ctgtactgcg cacttatcag      3840
     accactgctg gaatatgcta gcattgtttg gtggccagca tctactcggg cacttgcgcg      3900
     gctagagtcc attcaacgga aggcaacgcg cttcgccctt cgtgattggc cgcgtcgtct      3960
     cgactacaga actaggtgtc tgctgcttgg aatcccgcct ctcgccgaac gtgttgagca      4020
     caccagacta gcatttatca cgggaatctt aaacggaacc atcgactgtc ccgagctgct      4080
     ttcaaggatt cacctctatg ttcctgccag aatactccgt cgccgaccaa tgctggcagt      4140
     cgctgaaacc cgaacaacat ttggctctcg caaccccctt ctttgtatgt gccgtctatt      4200
     aaattcagct aacgatattt atgagcctgg aatgacgata acggaactga cttcactttt      4260
     aagtgttcgg aatgcgttca acaataacaa tatataaatg ttctgttcgt tatctaatgt      4320
     aatgtattgt aaacaaattt tgactcgaga gggcttcata gtccatcgat taataaacta      4380
     aactaaacta aactaaa                                                     4397
//
ID   CR1-9_CQ    repbase;    DNA;    INV; 4184 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4184
RA   Kojima K.K. and Jurka J.;
RT   "CR1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 11-11 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..4063
FT                 /product="CR1-9_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="GESESRGREHGRVTRPPLAASPGRAVESHVRVPRLPD
FT                 TTTSSPSHRLIRPACCSLQSRPGAGVGAGGGVSQTATLGKYXSXSQXPLPD
FT                 ARPTSSSCAISSTSPPVRTPNAVRAFWSSPGRAVESHVRVPHLPDTTTSSP
FT                 SHRLISPACCSLQSRPGAGVGAGGGVSQTATLGKYHSSLQNPLPDARPTSS
FT                 SCATSPPVRTPNAVRAFRSSPGRAVESHVRVPRLPDTTTSSPSHRLISSAC
FT                 CSLQSRPGAGVGAGGGVSQTATLGKYHSSLQNPLPDARPTSSSCATSPPVR
FT                 TPNAVRAFWSSPGRAVESHVRVPRLPDTTTSSPSHRPISPXCCSLQSRPGA
FT                 GVGAGGGVSQTATLGKYPSGLQNPLSDARPTSSSAAFPSTINAKGTSTPCK
FT                 LRIYYQNVRGLRTKIDAFFLAVTECDYDVIVLTETWLDIEILSPQLFGSTY
FT                 RVFRNDRNERNSDKKSGGGVLIAISSRLDCVLDPTPVCDTLEQLWVRLTVG
FT                 ASQRVCIGAFYLPPGLNRSIDLIKDHLESIGNVLSHLNLNDSFIQFGDYNQ
FT                 PGLKWIPSEEGGLEIDPVQSRVPLVSSYLIDGFNLHGLSQLNPCVNVYNNC
FT                 LDLVLVNEVALPNCAVLAAVDPLLPQDIAHPALEMFVDVPAPSATAEPPLN
FT                 SQQSFNFRKANYAAIQEELSRIDWSFLETAPSIDAAVDAFQSILNNLFTEH
FT                 VPLRRPPQKPPWSNPTLRKLNRLKTAALQEFSNHRSPFFKSKFNLASKRYR
FT                 GYNRTLYRRYVIRTQRDLRRNPKNFWSFVNSKRKADGLPPTLYLDDVAAAT
FT                 SEEKCALFAAHFKDAFNSRFASEAEIIEATRNTPINAIECSLTEVANCQVS
FT                 AAINKLKLSYSPGPDGIPSSVIKRCSGALLSPLTCLFNLSLRQSTFPDKWK
FT                 ASFMFPVHKKGDKSSVKNYRGITSLSACSKVFEILVNNVLFDSCKNYISTD
FT                 QHGFYPKRSVVTNLAQFVSHCLQEMDAGAQVDAVYTDLKAAFDRVDHGVLL
FT                 KRLERLGVSASLVRWLKSYLTNRILRVKIGNSESDMFISLSGVPQGSNLGP
FT                 LLFILFANELSMLLSEGCRLFYADDVKIFTVVRSVLNCSALQRQLNHFNEW
FT                 CVRNFLTISIEKCSTISFHRKLKPVVFDYAIAGNTLARVTQVRDLGVTLDS
FT                 ELCFTIHLHDIVSRANRQLGFIFRIADDFRDVACLRSLYCALVRSILEFCS
FT                 VVWCPYQSTWTAKIESVQRKFTRLALRRARNPAGWNTYEERCRVLQLETLE
FT                 RRRHVSQATFVAKVLAGEVDTPWIRAQIQIYTPARPLRQRQYLQLAHRDTN
FT                 YGQHEPVRFMCSRFNVFSHLYDPNISTPQFQQRARLWYSHQL"
XX
SQ   Sequence 4184 BP; 991 A; 1223 C; 950 G; 1012 T; 8 other;
     cggagaatcc gaatctcggg gtagagagca tggaagagta acgcgaccac ctttagctgc        60
     atcgccagga cgcgccgtag aaagccacgt gagagtccct cgcctgcccg acaccaccac       120
     gtcgtcaccc agccaccgcc tgataagacc agcctgttgc agccttcaga gccgtcctgg       180
     tgctggtgtc ggtgccgggg gaggggtctc tcaaacggca accctcggca agtaccmctc       240
     takwtcgcaa watccmttgc ctgatgctcg tccaacttcc agctcgtgcg ccatatcatc       300
     cacatcgcct ccagtcagga caccaaacgc tgtacgagct ttctggtcat cgccaggacg       360
     cgccgtagaa agccatgtga gagtccctca cctgcccgac accaccacgt cgtcacccag       420
     ccaccgcctg ataagcccag cctgttgcag ccttcagagc cgtcctggtg ctggtgtcgg       480
     tgccggggga ggggtctctc aaacggcaac cctcggcaag taccattcta gtttgcaaaa       540
     tccattgcct gatgcccgcc caacttccag ttcctgcgcc acatcgcctc cagtcaggac       600
     accaaacgct gtacgagctt tccggtcatc gccaggacgc gccgtagaaa gccatgtgag       660
     agtccctcgc ctgcccgaca ccaccacgtc gtcacccagc caccgcctga taagttcagc       720
     ctgttgcagc cttcagagcc gtcctggtgc tggtgtcggt gccgggggag gggtctctca       780
     aacggcaacc ctcggcaagt accattctag tttgcaaaat ccattgcctg atgctcgccc       840
     aacttccagt tcgtgcgcca catcgcctcc agtcaggaca ccaaacgctg tacgagcttt       900
     ctggtcatcg ccaggacgcg ccgtagaaag ccatgtgaga gtccctcgcc tgcccgacac       960
     caccacgtcg tcacccagcc accgcccgat aagtccagmc tgttgcagcc ttcagagccg      1020
     tcctggtgct ggtgtcggtg ccgggggagg ggtctctcaa acggcaaccc tcggcaagta      1080
     cccttctggt ttgcaaaatc ccctgtctga tgctcgccca acttccagct cggcggcctt      1140
     cccttctacg atcaacgcta aaggcacttc aaccccctgc aaactccgca tctactatca      1200
     gaatgttcgc ggactccgaa caaaaattga tgcctttttc cttgccgtca ctgagtgcga      1260
     ttatgacgtc atcgtcctga ckgaaacttg gctggatatt gagatccttt cccctcaact      1320
     gtttggatcg acgtatcggg ttttcaggaa tgacagaaac gagcggaaca gcgacaaaaa      1380
     gagcggagga ggtgtcctga ttgctatttc gtctcgcctg gactgtgtgc ttgaccccac      1440
     tcctgtttgt gacacgctag aacaactatg ggttaggttg accgtaggcg catcacagcg      1500
     cgtttgtata ggggcgttct atcttccacc gggcttaaat cgcagcatag atctgattaa      1560
     ggatcatcta gaatccatcg gtaacgtcct ctcccacctc aacttaaacg attcgttcat      1620
     wcaatttggt gactacaatc aacctgggct gaaatggatt ccctcggaag aaggcggact      1680
     tgaaatcgac ccagtacaat ctcgtgtccc gcttgttagc agttacctca tcgacggctt      1740
     caacctacat ggacttagtc agctcaaccc ctgcgtcaat gtctacaaca attgcctcga      1800
     ccttgtattg gtgaatgaag ttgcgctgcc caactgcgct gttctcgcag ccgtggaccc      1860
     gttgcttccg caggatattg cgcatccggc gctcgaaatg ttcgtcgatg ttcccgcgcc      1920
     ctctgcaact gccgaaccac cactcaactc tcagcaatcg ttcaacttca ggaaggccaa      1980
     ctacgcagcg attcaagaag agctgagcag gattgactgg agtttcttag agactgctcc      2040
     gagcatcgat gctgcagtgg atgcttttca atcgattttg aacaaccttt ttaccgaaca      2100
     tgtcccgtta cgaaggcctc cccagaaacc cccgtggtca aacccaaccc tacggaaact      2160
     aaaccgactc aaaacagctg ctcttcaaga attcagcaat caccgctcgc ctttcttcaa      2220
     atccaaattc aaccttgcca gcaaaagata ccgggggtac aaccgcaccc tctacaggcg      2280
     atacgtcata aggacgcagc gtgatctccg gagaaatcct aagaactttt ggtcattcgt      2340
     gaactcaaaa agaaaagcgg acggtctgcc acccacatta tacctggacg atgttgctgc      2400
     tgcgacttca gaggagaaat gtgccctgtt tgctgcccac ttcaaggacg cgttcaattc      2460
     caggttcgct tcggaggcgg aaattatcga agccacaagg aacactccca tcaatgctat      2520
     cgagtgttcc ctcacggaag ttgcgaattg ccaagtatct gctgctatta acaagctcaa      2580
     actctcctat tcgcccggtc ccgacggaat tccctcttcg gttatcaaac gatgttctgg      2640
     tgcactcctt tcccccttga cctgcctgtt caacctatct ttgcggcaaa gcaccttccc      2700
     ggataagtgg aaagcctctt ttatgttccc ggtgcacaag aaaggtgaca aaagcagcgt      2760
     caaaaattac cgtggaatca cctctctctc ggcttgttcg aaggttttcg aaattctggt      2820
     caataatgtt ctgtttgact cttgcaaaaa ctacatttcc acggatcagc atggcttcta      2880
     ccctaaacgc tctgttgtca cgaatcttgc tcaattcgtg tcacattgtc ttcaagaaat      2940
     ggatgctgga gctcaagtcg acgcagtgta cacagacttg aaggcggcgt tcgatcgggt      3000
     tgaccacgga gttttgctaa aacgactgga aagactcgga gtctccgcca gtctcgttcg      3060
     ttggctgaag tcttacctca ccaaccggat tctgcgagtc aagattggga actctgagtc      3120
     agacatgttc ataagtctct ctggcgttcc tcaaggcagt aatttaggtc cgttactgtt      3180
     catacttttc gccaacgaac tgtcgatgct gctaagcgaa gggtgccggt tgttttacgc      3240
     tgatgatgtc aaaatcttca ccgttgttag aagcgttttg aactgctcag ctctgcaaag      3300
     acagttaaac cactttaacg aatggtgcgt gcgtaacttc ctgacgatca gcatagaaaa      3360
     gtgtagcaca atctctttcc accgtaaact caaacccgtg gtcttcgact atgccatcgc      3420
     cggaaacact cttgctcggg taacccaagt acgtgacctg ggcgttaccc ttgatagcga      3480
     attgtgtttc actatccacc tccatgacat cgtgtccaga gccaatcgac agcttggatt      3540
     catctttagg atcgctgatg acttccgaga tgtcgcgtgc ttacgttcat tatactgcgc      3600
     gctggtaaga tccatcctcg agttctgctc cgtagtgtgg tgtccgtacc agagcacctg      3660
     gactgctaaa atcgaatcag ttcagcgaaa attcacccgg cttgcccttc gccgtgcaag      3720
     gaatcctgcc ggttggaaca cgtacgaaga acgttgtcgt gtcttgcagc tagagactct      3780
     cgagcggagg cggcacgtct cacaagcaac gtttgttgcc aaagtactgg ccggtgaagt      3840
     tgacactcct tggattcgcg ctcaaattca aatctacaca cctgctcggc cacttcgtca      3900
     acgccaatat ctacaacttg ctcaccgcga caccaactat ggacagcacg aaccagttcg      3960
     tttcatgtgt agccgattca acgtattttc ccacctgtac gatcccaaca tctccacccc      4020
     gcagtttcaa caacgagccc gactctggta ctctcaccag ctttaatctg tttttgtgtt      4080
     tcatgttgtt agcatttgtc tttagttaag ttaagtttta tcattaagac cacaagttgt      4140
     cggatgattc aaataaacaa ataaacaaat aaacaaaaaa aaaa                       4184
//
ID   CR1-9_DTa   repbase;    DNA;    INV; 4650 BP.
XX
AC   .
XX
DT   05-JUL-2012 (Rel. 17.08, Created)
DT   17-AUG-2021 (Rel. 26.08, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_DTa.
XX
NM   CR1-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4650
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1700-1700 (2012).
XX
RN   [2]
RP   1-4650
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..1684
FT                 /product="CR1-9_DTa_1p"
FT                 /translation="MSLSCSAKKCEFNGVIAGETYLLCWLCENTAHCKCAG
FT                 VGVHGRIGDLISKRIGFLWTCSACREITDEMRSFMRQTRTGFREIKKLFSH
FT                 LHEKLIAVESQFNGLKIIKETPTKLSSPPTGQLINHLTPTIPPSSMRDPGS
FT                 SNSSLMYASLVSANASVNDKNYVSSNNLVPPLPGPLLLCPTIESAMSPTRL
FT                 AIPAPVLNFVTPKSICADLAPGSHPEPDPGALQFNLPQSANAVPSVSSVKT
FT                 APPVSSGQVSSVVHNVHNGPGSSKRNRRPLLAAVNNGHPAGANRRRLEAVA
FT                 PQAIMPKKAIFVSRLRPDTTIDEIKGHLSDELQASPENFVVTKFNFAYKRK
FT                 VSSFKIILPDTHFSRALNPALWPVNTIVHEFDRKEPAINTNPSVPKN"
FT   CDS           1639..4509
FT                 /product="CR1-9_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase."
FT                 /translation="SERTSYKYKSVSSKKLDFVLHYQNVRGLLSKLSRLHT
FT                 DSAAFDPSVIAFTETWLNPTVSDNEILTNNFFLYRRDRPSKRGGGVLIAVK
FT                 SEISSQVVSIPNVGDIEFMSVKICLPNCNIFVTCSYIPPCSEASIYMQHLS
FT                 AIQNISSYASDSDHIIILGDFNIPYLSWSPCVDLIALVPGDQNDFVDGLID
FT                 LSLGQVNSISNANGRFLDLIFVSDLCDAIVTRTSPLTTPEDSHHPTLQLSI
FT                 SGIFRVPNSFEAPLRTRCFRHVNYLQMSRSLSSVDWSCLDSLHLDEAISTF
FT                 YNVLYSIFDELVPSTVVNNSNSPPWSSKHLAHLKNIKTKLFKKFAKTGLQS
FT                 DFSKYSVAKSNYFLHNSECYNSYLLRCKNEFRSNPKLFYSFVNSKRKANKF
FT                 PPSLQLNNVSASNDQDIGNLFADFFQSTYCKNNTGINCSYSYQLPHTDAIF
FT                 NPLIDEAEVLRSLSTIKLSFSAGPDMVPSCVLKHCAIPLAVPLTMIFHKSI
FT                 ATGTFPSMWKESFLIPLHKKGSKSDISNYRGIAKLSAIPKLFEKLICDQLQ
FT                 HQCRSLISSKQHGFTKCRSTTTNLLEFTTFISQGFKSTMQTDVIFTDFSKA
FT                 FDSVNHELLLHKLLLLGFPPTLLTWLRSYLTNRTQKVQYNSIYSKAVSVYS
FT                 GVPQGSHLGPLLFGLFINDLPQVIEFSKVLMFADDVKLCMHLTSPSSYMQL
FT                 QLDLNNLQSWCLVNKLLLNPDKCKSMSFYRSNPYICTYSIDHSALERIDTV
FT                 LDLGVLFDHKICFNRHVSTISNKAKCLLAFIKRWSKEFDDPFTTKLLYVSL
FT                 IRPTLEYCSSVWSPQYEHYQNMIESVQKQFLLFALRGLNWEEGRRLPSYRD
FT                 RLRLLDLPTLKDRRTCYGVILLHKLITGAVDSVDLLATLNWNVPCRATRRF
FT                 RPLALPVCRSNYSRFDPFRILCDNYNELYHLISYECSAKANSLKVIAFLST
FT                 ST"
XX
SQ   Sequence 4650 BP; 1228 A; 1155 C; 787 G; 1480 T; 0 other;
     cgttcaacta cctttgccta agccggtcgt gtttttctgt tgctccagaa tcttttgttt        60
     atttgagtga taaaatttta aatttaatcg ctaaattagc ctacaagttc tgtggttcat       120
     aaactcctcc tgttcaaatc aaatccgagc tcggacagtt aatataaaag tgtttaattt       180
     ataaacaaac cagaaaatta acttcagcca gcaaacaaca acaaagcgtc tgctttgtca       240
     cagcaagtat tgtgttgttg tttttattct cccgctctcc tgctgtacgc ctctcggagc       300
     tgccggtccg ttattactct aacggcactt ttcccgctct ccgctttgtg cgtgtcgcct       360
     aaattcaccg atcagtgcaa gccctcctgc taacttacgc tcttaaatcc gaacgttgta       420
     gcttgctgct ctgtattccg ctgctctcca cgcgttgcct taatctttcg ccgctcttac       480
     tttgctctgc atagtgacct gagtgcattc aaaaatgagt ctatcctgct cagccaaaaa       540
     atgcgagttc aacggcgtta ttgctggcga aacttatttg ttgtgctggc tatgcgagaa       600
     tactgcgcat tgcaagtgcg ccggtgtcgg cgtacatggt cgtattgggg atcttatttc       660
     caaaagaatt ggatttcttt ggacttgctc cgcgtgccgt gagattacgg acgagatgcg       720
     ttccttcatg cggcaaactc gaactggctt cagggagatc aagaagctgt ttagtcacct       780
     tcacgagaag ctgatagccg ttgagtccca gtttaatggg ctaaaaataa ttaaggaaac       840
     tccaacaaag ctttcttctc ctccaactgg ccaattaata aaccacctta ctcctactat       900
     tccaccttca tccatgaggg atcctggctc ctccaatagc tcactaatgt acgcttcatt       960
     agtttctgcc aacgccagtg taaacgataa aaactacgta tcctcgaata accttgtgcc      1020
     tccactgccg ggtcctttat tattgtgccc taccattgaa tcagccatgt ctcctactag      1080
     attggcaatt cctgctccag tgcttaattt tgttactcct aagtctatct gtgcagacct      1140
     ggcccctggc tctcatcctg agcctgatcc tggtgcctta caattcaacc ttccacaatc      1200
     cgccaacgcg gtaccgtcgg tatcctccgt taaaacggca ccgccagtat cctctggtca      1260
     agtatcgtcg gttgtacata atgtacataa tggtcctggt tcctccaaaa gaaatcgcag      1320
     gcccctcctg gctgcggtta ataatggtca tccagcaggc gcaaaccgta gacgcctcga      1380
     agctgtagcg ccacaagcaa tcatgccaaa gaaggccatt tttgtgtcgc gtctaaggcc      1440
     agatactacc atcgatgaaa ttaaaggtca cctaagcgat gagctccaag cctctcctga      1500
     aaactttgtt gtaacaaaat ttaattttgc ttacaaaaga aaagtttctt catttaaaat      1560
     aattctgcct gatacacatt tttcccgtgc tttaaatcct gcactatggc cagttaatac      1620
     gattgttcac gagtttgatc ggaaagaacc agctataaat acaaatccgt cagttccaaa      1680
     aaactagatt ttgtattaca ttatcaaaat gtccgtggcc ttctcagtaa gctgtccaga      1740
     ttgcatactg acagtgctgc ttttgatccc agcgttattg cttttactga gacttggctt      1800
     aatccaacgg tatctgataa tgaaatactt accaataatt ttttcctcta tagacgtgac      1860
     cgtccctcta aacgaggtgg gggtgtccta atcgcagtaa agtctgaaat atcatcccaa      1920
     gttgtatcca ttcccaatgt tggtgatatt gaattcatgt cagtcaaaat atgtcttcct      1980
     aactgcaaca tatttgtaac ctgctcctat attcctccat gctctgaggc ttcgatctat      2040
     atgcaacacc tctccgctat ccagaatatc tcatcatatg cctctgactc agaccatatt      2100
     ataatactgg gtgactttaa tattccgtac ctatcctggt ctccttgtgt cgatctaatt      2160
     gccctcgttc ctggtgatca aaacgatttt gtcgacggtc ttattgactt atctcttggt      2220
     caagttaact caatttctaa tgcgaatgga agatttttag atcttatttt tgtgtctgac      2280
     ctttgtgatg ccattgtcac acgtacctct ccattgacca ctcctgagga ctctcatcat      2340
     cctacactcc aactatccat tagtggcatt tttcgggtac ccaattcctt tgaggcccca      2400
     ttgcggactc gttgttttcg gcatgtaaat tatttgcaaa tgtcgagatc cctatcttca      2460
     gtggattggt cttgtcttga tagtcttcat cttgatgagg ccatttcaac tttttataat      2520
     gtcctttatt ccatatttga tgaattagtc ccttccacag ttgttaataa ctctaacagc      2580
     cctccgtggt cttccaaaca cttggctcac ttaaaaaata taaaaactaa actttttaag      2640
     aagttcgcca aaacaggact tcagtctgat ttttccaaat acagcgttgc taaatccaat      2700
     tacttcctgc ataattctga atgttataac agctacctcc tacgctgtaa aaacgaattt      2760
     cgcagcaatc ctaaattatt ttactccttc gtcaactcaa agcgcaaagc caacaaattt      2820
     cctccatcac tacagctaaa taatgtatct gcatcgaatg atcaagatat tggcaacctg      2880
     tttgcggact ttttccaatc cacctattgc aaaaataata ccggaatcaa ttgtagctac      2940
     tcctaccagc taccccacac tgacgccatt ttcaaccctc taattgatga agcagaagtt      3000
     ctacgtagcc tatccacgat taaattatca ttctctgcgg gtcccgatat ggttccaagc      3060
     tgtgtcctca aacattgcgc cataccactt gcagttccat taactatgat ttttcataag      3120
     tcgattgcta ctggcacatt tccatctatg tggaaagaat cctttcttat tccgctacat      3180
     aaaaaaggta gtaaatctga tatcagcaac tatcgcggca tagccaaact tagtgctatt      3240
     cctaagctct ttgaaaaact tatttgcgat caactgcagc accagtgtcg ctccttaata      3300
     tcctctaagc agcatggttt cacaaagtgc cggtctacaa caactaacct gcttgagttt      3360
     acgaccttca ttagtcaagg ctttaaatcc acaatgcaaa ctgatgttat ctttactgac      3420
     tttagtaaag cctttgattc ggtcaaccac gagctactgc tccacaagct cctcctcctc      3480
     ggatttcctc caactctact gacatggctt cgttcttatt taacaaatcg tacccaaaag      3540
     gtccagtaca acagcattta ttcaaaagct gtttccgtat attcgggtgt accacaaggc      3600
     agtcacctcg gtcctttact atttggctta tttatcaacg atcttcctca agtaattgag      3660
     ttctccaaag tacttatgtt tgcggatgat gtcaagttgt gtatgcatct gacctcacct      3720
     agttcctaca tgcagctcca gctcgactta aataaccttc aatcctggtg cctagtcaac      3780
     aagctactgc tcaatcctga taaatgtaaa tccatgtcat tttatcgatc caatccatat      3840
     atttgtacat actcaataga tcactctgca cttgaacgca ttgatactgt tcttgatctt      3900
     ggtgtcctat ttgaccacaa gatttgtttt aatcgccacg tcagtaccat ctccaataaa      3960
     gctaaatgct tattagcttt cataaaacgc tggtctaagg aatttgatga ccctttcacc      4020
     actaagctcc tttacgtctc tctaattcgt cctacacttg agtactgctc cagtgtttgg      4080
     tctccacaat atgagcacta tcaaaatatg atagaatccg tccaaaagca atttctcctt      4140
     tttgcactac gaggcttaaa ctgggaggag ggacgccgtt tgccatctta tagagacagg      4200
     ttgcgcctct tggatctacc taccttaaag gatcgtcgga cctgttatgg tgtgatatta      4260
     cttcacaaac tcatcactgg cgccgtcgac tcagttgatc tgttagccac cctcaattgg      4320
     aacgttcctt gcagagctac tcgcagattc cgtccattag cacttcctgt gtgcaggtca      4380
     aactactccc gtttcgaccc cttccgaatc ctatgtgata actataatga actttatcac      4440
     ctcatatcct atgagtgctc tgccaaggct aattcgctaa aagtcattgc gttcctttct      4500
     acatcgactt aattagttct cctacggtac aatttaaatt attgtttttt tacatttatg      4560
     atgtttttat ttttatgcta tgtatataat tttaagtctt ttgagcagta cattgcttta      4620
     aataaacaaa taaacaaata aacaaggatt                                       4650
//
ID   CR1-9_Hmel  repbase;    DNA;    INV; 4022 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4022
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1377..3722
FT                 /product="CR1-9_Hmel_1p"
FT                 /translation="LXXFXNLNNFQQHNHIVNSMNRILDLVLLDFPSPCIV
FT                 SRAVDVLSTIDLLHPPLNITINFSCETKLPYNNQYISYNFYRADYQVINAY
FT                 LSXINWYNMFAGVRDVNKLVEIFYGVIREVIDKFVPISRPNNKNYPLWFSR
FT                 QLIKRLNEKNKYRIRYKKYNNPLDLISFQLLAERCATITTECYSNYMNLSE
FT                 SRICNNPKYFWSFVKERRGGSSSYPVTLTNGIXTCSDGNSICNMFASQFES
FT                 VYNNNDCDXDPLLCPKAHHSNHAFSEALVSLYISSDLILKTLNSIDXTKGA
FT                 GPDCIPPYFIXKCAEXLVTPLHFIFNTSLNAGVFPSVWKTAKVVPIHKSGD
FT                 IHVVSNYRPISILSSLAKIFESLVCPFVQTHFEKYVCDEQNGFLRGRSVNT
FT                 NMAXYXEDIISCXDKKKQVDAIYTDFSKAFDXVVYKILLMKLNSYGVAGVF
FT                 LDWLSSYLSERSXFVVVNGFTSYSCKIFSGVPQGSHLGPILXNIFINDLPL
FT                 CFNYSTPLLFADDLKLYKIIETWEDVVKFQKDLHALVSWCQKNGMELNVSK
FT                 CFHIKFTRKNNIIPSAYFIKNAQISETQTIKDLGITIDXRXTXXPHLDFLI
FT                 KKASKMLGFVIRISRFFKKPQTKIILYNSLVRSMLEYGSVVWRPHFATHTL
FT                 RIERVQKRFVRHLAXSFNRVKRDKYSYRESLDYFKISDLNTRRDAIDLIFL
FT                 YKLVNYNIYCPRLLSKLSFTIPRKIPRKPIRLFAPPQRRTKLGSNSPITRL
FT                 SSLYNKKXSVSTNIDIXKMSLTAFKKATQCV"
XX
SQ   Sequence 4022 BP; 1369 A; 661 C; 660 G; 1288 T; 44 other;
     actatcatac aggaggagat gaataagcag gctgatacgc ttattgaaaa aattacgtta        60
     tctatgaaaa atatgttgag caacgaactt aagtctatga gggaggagat aaaggatatt       120
     agagactcag tttcttttat taatctacag tatgaagata tcgtaagaga aagcaagaaa       180
     gataaggata caattaggaa tttagaggaa caaaataaaa acattacatc aaatttaaag       240
     gaaatgacag tccggcttaa caatttagaa caacaaaccc gagccaacaa tcttgaaatt       300
     caatgcatcc cccagaaaaa aaacgaaaat ctcatcaata ttattgcaca attgggaaag       360
     gttattaata gcccgactaa aatagaagac atcgcccatt gcactagagt catgaaatct       420
     aaaaacaaca gcaatcgtcc caagtctatt gttgttcagt ttgcctcacc gagatgtcgt       480
     gattcctttt tggccgcatc aataaatttt aataaaacta aaagtattgc tgataaatta       540
     aacacgtcat acataggttt cgatggcgaa aagtccccca tatacatctc tgaacatctc       600
     agtccaggga atagggcgtt acacgcggca acacgcataa gagctaaaga aaaaggatat       660
     aagcacgtgt ggatcagagg aggtcgtatt tacacaagaa aaactgattt ttctgaatac       720
     atattaataa gagatttgga tgcactgaat aaaatagtct aatattaaag ggaaaaatat       780
     acatgttgta tttgatacat agtttttcgc gcaaataaac attatgaatt catcaaacac       840
     taccttatgt tctttatcga tatactacca aaatgtacga ggtctaagaa caaaaacgca       900
     tgctttcttt tgtaatctta gtaggaccag atatgatctg ataattctaa ctgagacttg       960
     gctaaactgt ggcatattaa gctcagaact ttttgatgac aactatattg tctttagaag      1020
     ggacagagag gaatcaagaa ctacgacgaa gaaggaaggt ggaggagtct taatagctgt      1080
     ttcaaaatcc ataagatgta aacggcagtt ttcatatgag actgccaatg aagacttgtg      1140
     ggttactatt gathttggca caccaatgaa gccttdtttw awtadbyttt ttgtgctgtc      1200
     tacttgbcac ctccagtabt aagatctaat cttaaggctt ttttagataa tgtttctaat      1260
     attaatgaac aaaataactg tcatraatgt ataatcggtg attttaactt gagtaatatm      1320
     aactgggaac tggtcaaaaa ttcagatact tattacactt ctccahtaaa ctatgacttt      1380
     tbgvwtttbt taacctaaac aattttcaac aacacaacca tattgttaat agcatgaata      1440
     gaatcttgga tttggtactc ttagaytttc catctccatg tattgtatca cgtgcagttg      1500
     atgttttatc tacaatagat ttacttcacc caccattaaa tataaccatt aacttttctt      1560
     gtgaaacaaa actgccttac aacaatcaat atatcagcta taatttctat agagcggatt      1620
     accaggttat taacgcgtac ttatctmaaa taaattggta taatatgttc gccggtgtga      1680
     gggatgtaaa taaactagtt gaaatttttt atggagtcat tcgagaggta atagacaaat      1740
     ttgtaccaat ttctagacca aataataaaa attacccact ttggttctca cgtcaactga      1800
     ttaaacgatt aaatgaaaaa aataaatata gaattaggta taaaaaatat aataacccct      1860
     tagacttgat atctttccag ttattggctg agcgctgtgc cacaattact actgaatgct      1920
     acagtaatta tatgaattta tcagaaagta gaatatgcaa taatcctaaa tatttttggt      1980
     catttgtgaa agagagacgc ggtggtagca gttcataccc agtcacactt acgaatggca      2040
     tcdctacatg ttcagatgga aacagtattt gcaatatgtt tgcttctcaa tttgagtctg      2100
     tgtataacaa caatgactgt gacttvgatc ccctgttgtg ccccaaagca caccacagta      2160
     atcacgcatt yagtgaggca ctggtctcat tgtatattag tagtgattta attcttaaaa      2220
     ccctaaattc tatagatcrc acgaarggyg ctggacctga ttgtattccr ccatatttta      2280
     tcarcaaatg tgcwgaaarc ctagtcaccc cattacattt catattcaac acttcactca      2340
     atgcaggagt ttttccttca gtttggaaga cggctaaggt ggtgccaatc cacaagtcag      2400
     gagatataca cgttgtaagc aattatcgtc caatttctat tctgtctagc ttggctaaaa      2460
     tctttgaatc tttagtatgc cctttcgttc aaacacactt tgagaaatac gtatgcgatg      2520
     agcagaacgg atttttaaga ggtcgatcag ttaatactaa catggcgayt tacatkgagg      2580
     acattatttc ttgtrtagat aaaaaaaagc aagtsgacgc aatttacacc gatttcagta      2640
     aggctttcga taragttgtt tacaaaattt tattgatgaa attaaactca tatggtgttg      2700
     caggtgtctt cctcgattgg ctaagttctt atttatctga acgctcatkt tttgttgtgg      2760
     ttaacggatt tacttcctat tcatgtaaaa tattttctgg tgtaccacaa ggttcacacc      2820
     ttggtccaat attgtycaac atatttatca atgaccttcc actatgtttt aactattcca      2880
     ctccattgtt gtttgcagac gatttaaagt tgtataagat aattgaaact tgggaggatg      2940
     tagtaaaatt tcaaaaagac ttacatgccc tagttagttg gtgtcaaaaa aatggtatgg      3000
     agcttaatgt atcaaaatgc tttcatatta aatttacaag aaagaataat attataccat      3060
     cagcctactt cattaaaaat gcgcaaataa gtgagacaca gaccataaaa gatttaggaa      3120
     tcacaattga taahagatwa actywtkttc ctcatttgga tttcttgata aaaaaagctt      3180
     caaaaatgtt aggctttgta attagaattt ctagattttt taaaaagcct caaacgaaaa      3240
     tcattttata caacagtctt gtaaggtcaa tgttggagta tgggagcgtt gtttggcgtc      3300
     ctcattttgc aacacataca ctgcgtatyg aacgggtgca aaagagattt gttagacatc      3360
     tcgcgytttc ttttaataga gttaaacgag acaagtactc ttatagagaa tcactagatt      3420
     actttaaaat atctgaccta aatactcgga gagacgccat tgacttaatt ttcttatata      3480
     aattggtaaa ttataacata tattgtccgc gtcttctctc taaactctct tttactatac      3540
     cccgtaaaat acctcgaaaa cctatccgtt tgtttgcacc accgcaacgg agaacaaaat      3600
     taggatctaa ttctcctatt acaaggctta gctcacttta taataaaaaa trtagtgtgt      3660
     ccacgaatat tgatatcttw aaaatgtctt taacagcttt taagaaagca acacaatgtg      3720
     tgtaaattat gttattactg atgctcctgg ttatgtaccc atttatggta tatatgtatg      3780
     tgtgtattcc ttaatctagt ttttagtata tttttatgta attttgatac gcgcttattt      3840
     atttgcaaac ctatgtttat ataaattacc atttcacgat tgttcacaac cactttatat      3900
     tgcatgcagt gtttatcttt aagtggcagt acattaattg tttttagttt ttaagttaga      3960
     tttactgaaa tgtaacaatg tatgagccgt tgataaactt aataaaataa ataaataaaa      4020
     aa                                                                     4022
//
ID   CR1-9_NVi   repbase;    DNA;    INV; 4291 BP.
XX
AC   .
XX
DT   12-MAY-2009 (Rel. 14.05, Created)
DT   12-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1-9_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4291
RA   Bao W. and Jurka J.;
RT   "CR1 families from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 936-936 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(6..680,677..1201)
FT                 /product="CR1-9_NVi_1p"
FT                 /translation="MESSSAGSVTSQTAIFYKCHPKVEVKTVICIICEEAF
FT                 HTSDFAKIDGAVKISGVLGLCPEHNQVDLTSKVNTNVLSNEAKIIIAQIKL
FT                 AHNLRKSDQLSVSEADSDDDDENSVKIDSNLKCENALLKELNKELKEKNKL
FT                 LRELLDKQKSEINSSKNKTYAQVISSAMPNNKPKRIPKIIVKNKDTKEFSI
FT                 DKINDVVAHYLIKDKSIQAKKLIKKXSEIIVDCRCMLTEESASKAYNVLKK
FT                 KLDESCDVIKEKIENXKVKVVGINNFETLDNKKIEDDINERNFSKFNKKCT
FT                 VLHSYNNSKTHLQSVILEIPAELYQHVRENKNRIFVGYQNCKVHDYCNIKP
FT                 CFNCGRYGHNGFKCTNNHTCLKCAGNHKTTDCTGNKLNCPNCIFSNNKYKG
FT                 TLRIN*"
FT   CDS           join(1201..2442,2403..4094)
FT                 /product="CR1-9_NVi_2p"
FT                 /translation="MAQEFNFEDIYNIERDAENIRSLNKSISKKKNLILCV
FT                 NIRSLNANYEKLESFIESLVVKPIIIICTETWILQYPQYYQLQGYKSYYND
FT                 SKINRADGVMLYIKKNIQEITKIEVIDRLSVVSSDTFLESGEAIRISAMYR
FT                 CHDISKSEFTNSVRKFLSKQVNIKNQCIFGDFNIDIRDINYDKIGLAEKTI
FT                 AQEFLNNFFENEYIPFFRGITRPSQNSENGTCIDNCFAKVRNIELESFKLN
FT                 IPFNDHYPLFISINKFKIQKDYNQSACINYGKLINIAKRVEWDSLLQINDP
FT                 NQAINELISMIQSCVEKATDRKYSNKNKKDSVPKKKWITKAILISCKTKEM
FT                 LYNIWKKNPTNMKLKMDYKNYEKILSKVIKDAKYKYENNAIRKCSGNSRQL
FT                 WSIINDKLGKKRXKEDHLIVVRKKKKQGGSLDSIIVNDQKIEDKTTIANTM
FT                 NEYYCNVGIXLSNQIXKMDLEQLKLPVRNNYSIFINPTNMYEIQNIIIAMK
FT                 KKAGGVDNISAITIKTLSKHILKPLEYIFNLSIQQSIWPNALKQADIVPIY
FT                 KSGDNSCISNYRPISLTSNIAKIFEKIIYNRLYNFIMKHKIISDKQFGFIR
FT                 KRGTKDALNCLXNIIYRNLDKSKPIITAFLDLAKAFDTVDHSILLDKLERY
FT                 GVRGEALKLLISYLSDRKQCVKISNCKSEYKEITIGVPQGTILGPLFFILY
FT                 VNDLLIDMQNETILSYADDTVIISCDNSWTAAQERLNEYLRKVAIWLNLNK
FT                 LSLNVNKTVYIAYGNYCDSVPSTLNIKIGDNVINRVDSYRYLGLIIDYNMK
FT                 WDKHINYIIKSTRYLIFIFAKLKKFMDSKTLMLLYYAFFQSITNYGIIAWG
FT                 GAYNNYLNLIQGIQKKILRIINKNCYITQNQPLPIRQMFELECIVYHYNEL
FT                 RDRYIRSTNKTRNKNLPLPKIDKTVSKKSSYYVAVSVFNTLPNDLKDLSIS
FT                 KVSIKRKLKMFIGKNYFGCYIF*"
XX
SQ   Sequence 4291 BP; 1777 A; 538 C; 724 G; 1245 T; 7 other;
     ccaagatgga gtcatcgagc gcaggctcgg tgacttcaca gacagcaatt ttctataaat        60
     gtcatccaaa agtggaagta aaaacggtta tttgtataat atgtgaggag gcttttcata       120
     ctagtgattt tgctaaaata gatggggcag taaaaattag tggagttcta ggattatgtc       180
     cggaacataa ccaagtagac ctaacctcaa aagtgaatac gaatgtgctg agtaatgaag       240
     ctaaaataat cattgctcag attaaattag cacacaatct gagaaaaagt gatcaattaa       300
     gtgtgtctga agctgatagt gatgatgatg atgagaatag tgtaaaaata gacagtaatt       360
     tgaagtgtga aaatgcccta ttaaaagaat taaataaaga actgaaagaa aaaaataagt       420
     tattgagaga attacttgat aagcagaaaa gtgaaataaa tagctcaaaa aacaaaacct       480
     atgctcaagt aatttcgagt gccatgccta ataacaagcc aaaacgaatc ccaaaaatta       540
     tagttaaaaa taaagatact aaagaatttt ctattgacaa gataaatgat gtggttgcac       600
     actatctcat taaagataag agtatacaag caaaaaaact aatcaagaaa argagtgaaa       660
     taatagtaga ttgtagatgt taacagaaga aagtgcaagc aaagcatata atgtattaaa       720
     gaaaaagctt gatgaaagtt gtgatgttat aaaagaaaaa atagagaaty caaaggtaaa       780
     agtagttgga ataaataatt ttgaaaccct agacaataaa aaaattgaag atgacataaa       840
     tgaaaggaat tttagtaaat ttaacaagaa gtgtacagta ttgcactcat ataataactc       900
     taaaactcat ctacagtcag ttatattaga aatccctgct gaattgtatc aacatgtaag       960
     agagaataaa aacaggatct tcgtgggtta tcaaaactgt aaggtgcatg actattgcaa      1020
     cattaaacca tgttttaatt gtggtagata tgggcataat ggctttaagt gcacaaataa      1080
     tcacacatgt ttaaaatgtg caggtaatca taagactaca gattgtacgg gtaataaatt      1140
     aaattgtcct aattgtatct tcagcaataa taagtataaa gggaccttaa ggattaacta      1200
     atggcccaag aattcaactt tgaagatata tacaacatag aacgtgatgc agagaacatc      1260
     agatcactca acaagagtat ctcgaagaaa aagaacttaa ttttgtgtgt aaatataaga      1320
     agtctaaatg cgaattacga aaaattagaa tcatttattg aaagcttggt agtaaaacca      1380
     attattataa tatgtacgga aacatggatc ttacaatatc ctcaatacta tcaattacaa      1440
     ggctataaaa gctattacaa tgatagtaaa attaataggg ctgatggagt catgttatat      1500
     ataaaaaaga atatacagga aataactaaa atagaagtaa ttgatagatt gagtgttgta      1560
     agttctgata cttttctaga gtcaggtgag gcaatcagga tctctgctat gtacaggtgc      1620
     catgatatat cgaaatctga atttactaat tccgtaagaa aatttctgtc taaacaggtt      1680
     aatataaaaa atcaatgtat ttttggggat ttcaatattg atataaggga tataaattat      1740
     gacaaaattg gtttagctga aaagacaatt gctcaagaat ttctgaataa tttttttgaa      1800
     aatgaatata ttccattttt tagaggaatc acaagaccat ctcagaacag tgagaacggt      1860
     acgtgtatag acaattgttt cgccaaagta agaaatattg agttggagtc ttttaagtta      1920
     aatattccgt tcaatgatca ttacccactc ttcataagta ttaacaaatt caaaatacaa      1980
     aaagattaca atcaatcagc ctgcattaac tatggcaagt taataaatat tgcaaaaaga      2040
     gttgagtggg actcattgtt acaaataaac gatcctaatc aagctataaa cgaattaata      2100
     agtatgatcc aaagctgtgt tgaaaaagca actgatagaa aatattcaaa taaaaacaaa      2160
     aaagattcag ttccaaagaa aaaatggatt accaaagcaa tattaatatc ctgtaaaact      2220
     aaagagatgt tatataacat atggaaaaag aatccaacaa atatgaaact gaaaatggac      2280
     tataaaaatt atgaaaaaat tttgagtaag gtaattaaag atgctaagta taaatacgaa      2340
     aataatgcta ttagaaaatg tagtggtaat tcaagacagc tttggagcat aataaatgat      2400
     aagttaggaa aaaaaagaar caaggaggat cacttgatag tataatagtt aatgatcaga      2460
     aaattgagga taagactact attgcgaaca ctatgaatga atattactgt aatgtaggaa      2520
     tayatttaag caatcaaatt waaaaaatgg acttagagca attgaagctg ccagttagaa      2580
     acaactactc aatttttatt aatccaacta atatgtatga aattcaaaat ataattattg      2640
     caatgaaaaa gaaggctggt ggggtagata atattagtgc aataactatc aaaactttat      2700
     ctaaacatat attaaaacca ttagagtata tatttaatct aagcatacag caatcaatct      2760
     ggcctaatgc actgaaacaa gcggatattg tacctatata taaatcggga gacaatagtt      2820
     gtattagtaa ttatagacca atatcgctaa cttctaacat tgccaaaata tttgaaaaaa      2880
     tcatatacaa tagactttat aattttatca tgaaacacaa aataatatct gataaacaat      2940
     ttggctttat aagaaagaga ggaacgaaag atgctctyaa ttgtctawca aatattatat      3000
     atagaaacct agataaaagt aaaccgatta taacagcgtt cttagacctg gctaaagcct      3060
     tcgatactgt agatcacagt atactgctgg acaaattaga aagatacggt gtaagaggag      3120
     aagcattaaa attactcatc agctatctat ctgataggaa acaatgtgta aaaataagta      3180
     actgcaagag tgagtacaaa gaaattacga taggggttcc acaaggaacc atacttggcc      3240
     ctttattttt tatattatac gttaatgacc tattgataga tatgcaaaat gaaactatat      3300
     tatcttacgc agatgacaca gttatcattt catgtgataa ctcgtggaca gctgcacaag      3360
     aaagattaaa tgaatatctt cgtaaggtgg caatatggct aaacctaaat aaattatcgc      3420
     tcaatgtaaa caaaaccgta tatattgcat atggcaatta ctgtgatagt gtgcctagca      3480
     ccttaaacat caaaattggt gataatgtaa taaatagagt agacagttat agatatttag      3540
     gattaataat agactataac atgaagtggg ataagcacat aaattatatt ataaaatcaa      3600
     caagatattt aatctttatt tttgcgaagc taaagaaatt tatggatagt aaaacgctaa      3660
     tgttactata ttatgccttc tttcaaagta ttacaaacta tggtataatt gcatggggtg      3720
     gggcttataa caattattta aatttaattc aaggtataca gaagaaaata cttcgaatta      3780
     taaataaaaa ctgttatata acacagaacc aacctctacc tataaggcaa atgttcgaac      3840
     tagagtgtat agtatatcat tataacgagt taagagacag atatataaga agtacaaata      3900
     agacacgaaa caagaatcta ccattgccta aaattgataa aacagtaagc aaaaaaagca      3960
     gctattacgt ggctgtgagt gtatttaaca ctctaccgaa tgatctcaaa gacctatcaa      4020
     taagtaaagt ctctattaaa agaaaactaa agatgtttat aggaaagaat tattttggat      4080
     gttatatatt ttaatattgt taactttttt atggaaaggt ataagggcat gatagcgttg      4140
     attgcgttat cttggctcta tattgtagtt ttaagttttt tagtattaat gtttatgtat      4200
     gccatcccta tgtacaggca actgtgtttg cctctatagg atgcctttca aaggcatatg      4260
     tatatggtat ttaaataaat aaataaaaaa a                                     4291
//
ID   CR1_Ele1    repbase;    DNA;    INV; 4874 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4874
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4874
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 28
CC   sequences with >92% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           1..726
FT                 /product="CR1_Ele1_1p"
FT                 /translation="MRNNQLFWFCPSCATLMKDMRLRNTARAAYEVGQGHA
FT                 LNSHSDIMTNLKTEIMDELKAEIRNNFAKLINSSSCTPKSSKRVGIDPRFT
FT                 RSRRLFSTAANPVSKNQPPLLLGTGSTPSPSIEIGTVPPNQPKFWLYLSRI
FT                 AKDVSADQVCALAKKRLGTDDVQVVRLVAKGRDINTLSFVSFKIGMSLELK
FT                 FKALSTSTWPKGVVYREFTNNNNREENFWRPGHVAASDDPLSLPTEEVVLM
FT                 E"
FT   CDS           1530..4727
FT                 /product="CR1_Ele1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYDLWSSANGDAQMSEAGPSSMFSVDGALLEFARRSD
FT                 ILDCWNGSRDHFTLPLPDVMDLRRVDEASDSRGPPGAEVMTQPELGNTLRR
FT                 PKTDSKIRRVLTDSQRTSHDVMIYYQNAGGMNCDINSYLLATSDDCFDIIV
FT                 LTETWLDSRTFSSQVFGPSYEVFRCDRSARNSTKSVGGGVLVAVKKKLKSK
FT                 PIDNDSWASIEQVWVKIEFSGRNLFLCGIYIPPDRTRDMASIETHNQSIIH
FT                 ISAAANPEDEIVVVGDFNLPGISWQTCGNGFMHPNLGRSSIHAAASRLLDC
FT                 YSTATLRQINNVLNENNRCLDLCFVSARDVAPLITSAPVALVKNVAHHRPL
FT                 IIALQHNEIRHRESISPVYYDFRNADQQSIAEFLSSVDWLHVLDSDDVDTA
FT                 ALTLSHVIEHAIERHVPKKVHSSSGPPWQTRELRHLKTSKRAALRLYSKHR
FT                 TPSLRDHYARVNNAYKNASRRCYKRYQQQVQLNLKSKPKSFWRYVNKQRKQ
FT                 SGLPSVMKLDEEVASDWYDICTLFAKKFSSVFCEEELSEEHVANVANNVPL
FT                 FGETFNMLTVDDNMIIEAAARLKSSLNPGPDGIPSVLLKAHIVNLLVPIRH
FT                 VFNLSLNSGRFPAAWKTATMFPVHKKGDRKDVNNYRGISALCCISKLFELI
FT                 VMKPMLFHCKHYISEDQHGFVSGRSTTTNLLCLTSHIADSFADRAQTDVIY
FT                 TDLTAAFDKINHAITVAKLERLGVGGLMLRWFSSYLTDRRLTVELAGFSSE
FT                 SFTATSGVPQGSHLGPLIFLLYFNDVNTVIKGPRLSYADDLKLFLRVRTIA
FT                 DAVALQHDLDVFVVWCDMNRLTVNPEKCSIISFSRKLQPILFCYQLKGKVL
FT                 QRVEDVKDLGVILDAQLTFKHHLSYVIEKASRTLGFIFRIAKDFTDPYCLK
FT                 SLYCSLVRATLEYCSAVWHPYYRNGVERIESVQRRFIRYALRRLPWRDPFR
FT                 LPSYQSRCQLIQLESLQTRRDVNRAMVVADLLSGRIDCPALLESINASAHS
FT                 RTLRNNAMLRLPLRRTNYGQNSAMVGLQRVFNRVAEGFDFHLSRQVIRRNY
FT                 VEILSRLSV"
XX
SQ   Sequence 4874 BP; 1214 A; 1218 C; 1093 G; 1349 T; 0 other;
     atgagaaaca accaattgtt ctggttctgt ccttcatgtg ctacgctcat gaaagacatg        60
     cgcctccgta acactgcacg tgccgcttat gaggtgggcc aaggacatgc gctcaactcc       120
     catagcgaca tcatgacgaa cctgaaaacc gagattatgg atgaactgaa agccgaaatt       180
     cgaaataatt ttgctaaact gattaattca agttcctgta ctccgaagtc ttccaaacgt       240
     gttggcatcg acccaaggtt caccaggagc cggaggctgt ttagcacggc agccaatcca       300
     gtatcgaaga accaaccgcc tttgctactt ggaactggta gcacaccatc tccgtcaatt       360
     gaaatcggta cggtcccacc gaatcaacct aagttctggc tgtatctatc tcggatcgca       420
     aaagatgtgt cagctgatca agtttgcgct ttggcaaaaa aacgcctcgg tactgatgac       480
     gttcaagtag ttcggctcgt ggccaaggga agggacataa acacattgtc cttcgtttca       540
     ttcaaaattg gcatgagttt ggaattaaaa ttcaaggctc tgtccacttc gacgtggccg       600
     aaaggtgttg tctacaggga gttcaccaac aacaacaacc gtgaagaaaa tttttggcgc       660
     ccaggacatg tggctgcatc cgacgatccg ctgagccttc caacagaaga agtggttcta       720
     atggaataag tgatgacccg ggacgcactc ttcccctcag cctaaaggaa gcccctattc       780
     ctctcaccgc agtcgagccc ctcccgccag cgaccagcag ccgtcccggt cctgcgtgtg       840
     agttggaaga tggggtcttc cgatcatctt tcccaggcaa gtatgcgtac cctttgagaa       900
     cttcaccggc tgtaccatct gttgttttca gtgtatcttc accaactcaa acatgttcag       960
     cgtttcttaa tcggacaccg ggacgcaaat ttgccgcaag ccttaaggaa gcctctattt      1020
     cactcaccgc agtcgagccc ctttcgccat cggccagcag ccgtcccggt cctgcgtgtg      1080
     agctggaaga cgaggttctc cgaactccaa catcaggcaa gtatgctctc cacttaagaa      1140
     cttcgtacgc tgtatcaccc gatgctttca gtgcaacttc aacgactcaa acgtgttctt      1200
     catatctgga ccggataccg ggacgcaaat ttgccgcaag ccttaaggaa gcctctattt      1260
     cactcaccgc agtcgagccc ctcccgccat cggccagcag ccgtcccggt cctgcgtgtg      1320
     agttggaaga tggggtcttc cgaaatcgta tctcaggcaa gtacgacatc aatacgagca      1380
     attcgcttcc tgaagttcct gttgttttca gcgtactcga agaactgtca ggcttagctt      1440
     caaactccga ttcaccagga ccgtcggcag tacctgccgg aaacaatcat agaagccgca      1500
     ttcccgagta tgctcttatt gattcacgga tgtacgacct ctggagttcc gcaaatggtg      1560
     atgctcagat gtctgaagcc ggcccttctt caatgttttc tgtcgatgga gctcttttgg      1620
     agtttgctcg tcgctctgac atcttagatt gctggaatgg gtcgcgtgat cacttcacac      1680
     tccccctacc ggatgtcatg gatttaagac gtgtagatga ggcttcggat agtcggggcc      1740
     cccctggtgc ggaagtcatg acccaaccgg aactagggaa caccctccgg cgcccgaaga      1800
     ctgactctaa aattcgtcgt gtactaactg actcccaacg cacttctcac gatgttatga      1860
     tctactacca aaacgctggc ggaatgaatt gcgacattaa tagttacctt ttggcgactt      1920
     ccgacgattg tttcgacatt atcgttctaa cggaaacatg gctcgattcc cgtacttttt      1980
     ccagtcaagt tttcggacct tcatatgagg tgttccgatg tgatcgtagc gctagaaaca      2040
     gtaccaaatc tgttggtggt ggcgttcttg tagcggtcaa gaaaaaattg aaatctaagc      2100
     ctattgataa cgactcttgg gctagtatcg agcaagtgtg ggtgaagatc gagttctccg      2160
     gtcgtaacct atttttgtgt gggatttaca tccccccgga ccgaacgcga gatatggctt      2220
     caatcgaaac acataaccag tccataattc atatttctgc cgcagcgaat cccgaagacg      2280
     agattgttgt tgttggcgat tttaatcttc ccggaatatc ctggcaaact tgcggcaatg      2340
     gtttcatgca cccaaatctt ggccgttctt ctatccatgc cgctgcgtcc cgacttcttg      2400
     attgttacag tactgctacg ctgcgacaaa ttaacaatgt actcaacgaa aacaatcgct      2460
     gtcttgacct ttgctttgtt agtgcgcggg atgtggcacc gctgataact tcggcccccg      2520
     tcgccttggt gaagaatgtt gcccatcatc gtccactgat tatcgctctt caacacaacg      2580
     aaattcgcca ccgtgaatcc atctctccag tttactacga ttttcgtaac gctgaccaac      2640
     agagtatagc ggagtttctt tcatctgtgg attggcttca cgtactcgac tccgatgatg      2700
     ttgacaccgc tgctttgaca ctatctcatg taatcgaaca cgctatcgaa aggcatgtgc      2760
     ccaagaaagt tcattcttct tcgggtcctc cgtggcaaac ccgcgagcta cgccatctga      2820
     agacttcaaa aagagctgct ctgagactct attccaaaca ccgcacgcct tcacttcgag      2880
     atcactacgc aagagtcaat aatgcttaca agaacgctag tcgacgttgt tataaacggt      2940
     atcagcagca ggttcagctg aatctaaaat cgaaaccgaa atcattctgg agatatgtaa      3000
     acaaacaacg gaagcaatct ggtctcccct ccgttatgaa gctagatgaa gaggtagctt      3060
     ccgattggta tgatatctgc accctttttg ctaaaaaatt ctccagcgtt ttctgcgaag      3120
     aggagttatc cgaagaacac gttgcgaatg ttgcaaacaa cgtacctttg ttcggtgaaa      3180
     cgttcaacat gctcactgtc gatgataata tgatcatcga ggcggctgca cggttaaaat      3240
     catcgttgaa ccccggtccc gatggaattc catctgtttt gctgaaggcg cacatcgtca      3300
     atttgctggt tcctatacgc catgtattca acctatcgtt aaatagtgga cgatttcctg      3360
     cggcctggaa aactgctact atgtttcctg tgcataaaaa aggcgatcgt aaggatgtca      3420
     ataattatcg aggaatttca gcactttgtt gtatttctaa gctcttcgag ttgatagtca      3480
     tgaaaccaat gctgttccac tgtaaacact acattagtga ggatcaacac ggattcgtat      3540
     cggggcgttc cacaacgacc aacctgttgt gccttacttc acacattgcc gacagctttg      3600
     ctgatcgagc ccagacggat gtgatctata ccgacttgac cgctgcgttc gacaaaataa      3660
     accacgcaat aactgtcgct aagttggaaa ggctcggtgt cgggggccta atgttgcgct      3720
     ggttcagctc gtatctgact gatcgtcgct tgactgtgga gttggcagga ttctcttccg      3780
     aatctttcac ggcaacttcc ggagtacctc aaggaagcca tttgggaccc ctgatttttt      3840
     tgctgtactt caacgatgtc aacacagtaa ttaaaggacc tcgattatct tatgcagatg      3900
     atctaaaact gtttctgcgg gtccgtacca tcgccgacgc cgttgctctt caacatgatt      3960
     tagatgtttt tgtagtttgg tgcgacatga atcgattgac agttaatcct gagaaatgct      4020
     cgattatctc attctcacgc aaactgcagc ccatcctgtt ctgttaccag ctcaagggaa      4080
     aggtgcttca acgagtagaa gatgttaaag atcttggcgt tattctggat gctcagttga      4140
     cgttcaaaca ccatctgtcc tatgtcatcg agaaagcctc caggacattg ggttttatct      4200
     tccgtattgc caaggatttc acggatccat attgtctcaa atctttgtac tgctcattag      4260
     ttcgggccac acttgaatat tgctccgcag tttggcatcc gtattaccgt aacggcgtgg      4320
     agaggataga gtcagtgcaa cgtcgcttca tccgttatgc tctccgtcga cttccatggc      4380
     gagacccgtt ccggttgcct agctaccaaa gtaggtgtca actcattcaa ctggaatcac      4440
     tgcagacccg tagagacgtc aatagagcga tggtagtggc tgacttgctt tcaggaagaa      4500
     tagactgtcc tgcgctcctg gaatctatca atgcgagtgc tcactccagg acgttgcgta      4560
     acaatgctat gttgaggtta ccattgcgac gaactaacta tggccaaaac agtgctatgg      4620
     tcggtcttca acgcgtgttc aatagggttg ctgaagggtt tgattttcac ctgtcccgtc      4680
     aagtaatacg tcgtaactat gtagaaattt tatcccgact ctctgtgtga atatttgtga      4740
     ctttcatttg ttttattttt tgacattttg ttgccttgtt ttgttaagtt tcaacttagt      4800
     attttactgt attttttagt ttaaaacatc attggggctt actgtctgtt ggtgtataaa      4860
     tataaataaa taaa                                                        4874
//
ID   CR1_Ele10   repbase;    DNA;    INV; 4624 BP.
XX
AC   .
XX
DT   28-SEP-2010 (Rel. 15.10, Created)
DT   28-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele10.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4624
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4624
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1]. Closely related to T1 and Q. This consensus is
CC   likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1513
FT                 /product="CR1_Ele10_1p"
FT                 /translation="QVESVVGCRRIFKRSVVILNXFFFAVYKHRARPVKMQ
FT                 CSVESCNISDDRFLWKCEFCFKNYHAACIGVQRHQESFILSFMVPLCGDCQ
FT                 HNLKTGIDTRKVLHQQQQLIDSIRAQTDANLRVAADLKKLSAMGDLFDQIE
FT                 LQLKESVLSINNSTSSIVSNAVSALSRVAEKNSTIKNDTPNSDLLAIKNHL
FT                 TGLLDISMKSSKQNIEDFVETLTTDLTGELKKICSEVQSLSSLTIEMAAHC
FT                 NDHNASQPHMTTDAIVEMQSIGNEILSEVKVLIDTVNSPQTNIDAVRFVEV
FT                 ESPPSLLDELADQGIETVNLNPGRNSNGTAGWRLLGTKKVWRSDWTEYDNR
FT                 QQRRASQQKTKEKAQKRKKANKHRGHNNSTNRKTNSIFSKTPSKHTRSKNE
FT                 RENMKNNTSQKWFNYNDSNMKRRSNGAVSNGLPSDKDLLAAAKLTFSKPPV
FT                 KQRGIKFQRGEILNPYPVDDAFPSCSTSSSNWLFGPALRNSFSQHCSSCSC
FT                 EKTCFRST"
FT   CDS           1633..4566
FT                 /product="CR1_Ele10_2p"
FT                 /translation="MQRDVLPSTSSEANATEILVYCQNFNRMKSASKMNEI
FT                 YKRILTSSFSVVMGTETSWNEKIKSEEVFGNSFNVFRDDRDLVLTQRMSGG
FT                 GVLIAISTKFNSELIISSKHKEFEHVWVKAHIAGETHIFASVYFPPDQACK
FT                 SSYEIFFQTAEEIVSQLSPEFKVHIYGDFNQRNADFIRDSENESILLPVVG
FT                 ENESLQFIFEKAAFLGLNQINHVKNRQNCYLDFLFSNIMDDFCVNESVSPL
FT                 WKNEAFHTAIEYSIFVHNNHNSDNCDFENFFDYKNANYDGIKQKLNRIDWQ
FT                 SVLKNQGDLEIAVTDFYSILSEIIQMEVPLLRRRRRNGSKNPVWINKQITN
FT                 LKNRKQKAHKIYRQQKSRESLENYLYIVNQLNQAISAALEEYNTKIENDLK
FT                 SCPRNFFNYAKSKMKSNNFPSKMTLDDRAADNPDGMCNLFATFFQETFTNF
FT                 SDKDRDFEYFSSFPDFTSDIGVSQILLQDILTGLKNLDSTKGSGPDGIPPI
FT                 LLKNLANEFTAPLFWLFNKSLEMSRFPKEWKRSYLIPIYKSGRKSDVRNYR
FT                 GIAIISSIPKLFESIINKNVFSQIKHRITNTQHGFYKGRSTTTNLLEFVNY
FT                 TLNAMDRGNHVEALYTDFSKAFDRLDIPMLIFKLNKMGIAMRLLNWIESYL
FT                 TDRQQIVRFEGKMSKPVHVTSGVPQGSHLGPLLFILFVNDISYVLKHLKIL
FT                 IYADDMKLYMEINSNKDSDIYLNEISIFDKWCSKSLLQLNVKKCNLITYSR
FT                 KRNTPQITVSLGNQIVQKCDKIRDLGVILDSKLTFTDHYNTIIHKATNMLS
FT                 FIKRFSYNFRDPYTIKTLYIAYVRSVLEYCSIVWSPHIKIHGDRIESVQKQ
FT                 FLLYALRKLGWTTFPLPSYEARCMLIDIQTLNERREIAMISFINDIVSQRI
FT                 DSTNLLSCLNFYTPARQLRNRNLFASNNHRTNYAKFGPMNRMMSLYNQHCT
FT                 EIDLTMSRTKLRQYFNSLRYNTT"
XX
SQ   Sequence 4624 BP; 1580 A; 832 C; 828 G; 1383 T; 1 other;
     tcaagttgag tcagtcgtcg ggtgtagacg catttttaag cgctccgtag ttattttaaa        60
     ttawtttttt tttgctgttt acaaacatcg cgcgcgaccg gtaaaaatgc agtgtagtgt       120
     tgaatcatgc aatatcagtg acgatcgctt cctatggaag tgcgagttct gctttaaaaa       180
     ttaccacgcg gcatgcattg gtgtgcaacg ccatcaggag agttttattt tatcatttat       240
     ggtacctctc tgcggcgatt gccagcataa tttgaaaact ggaattgaca cccgcaaagt       300
     gctccatcaa cagcagcagc taatcgattc aattagggca caaactgacg ccaatcttcg       360
     agtagccgcc gatctaaaaa agctcagtgc aatgggggat ttatttgacc aaattgagct       420
     tcaactaaag gaatcggtgc tgagtattaa caacagcaca tcgtcgatcg tttcgaatgc       480
     tgtgtcggca ttatcgcgtg tggctgaaaa aaactcaaca ataaaaaatg atacgcccaa       540
     cagtgattta cttgcaataa aaaatcattt gaccgggctt ttggacatat caatgaaatc       600
     ttcaaaacag aacattgaag attttgttga aacgttgact acagatctaa ccggcgaact       660
     aaaaaagatc tgttctgaag tccagtcact gagcagtcta accattgaga tggctgctca       720
     ttgcaacgat cataatgcca gtcaaccaca catgacaacg gatgcgatag ttgaaatgca       780
     atcgatcggc aatgaaattt tgagtgaagt taaagtttta atcgatactg ttaactcacc       840
     acaaaccaac attgacgctg ttcgattcgt ggaagttgag tcacccccta gccttttaga       900
     tgagttggct gatcaaggaa tcgaaactgt taatttgaac ccgggccgaa attcgaatgg       960
     cactgcaggt tggcgtttgc taggaacaaa aaaggtttgg cgctctgatt ggacagaata      1020
     tgacaatcgt cagcagcgtc gtgcatcgca gcaaaaaact aaggaaaagg cccaaaaacg      1080
     gaagaaagcg aataaacaca gaggccataa caacagtacc aatcgaaaaa caaactccat      1140
     tttttcaaaa actccctcca agcacaccag aagtaaaaat gaacgcgaaa atatgaaaaa      1200
     caatacttca caaaaatggt tcaactacaa cgatagcaac atgaagcgca gaagcaatgg      1260
     agcggtttct aatggtcttc cctcggataa ggatttactc gcagcagcaa agctgacttt      1320
     ttccaagcct ccagttaagc aacgtgggat caaatttcag agaggcgaaa ttttgaatcc      1380
     gtatcctgtc gatgatgcat tcccttcgtg ctcaacatct agttcgaact ggttgtttgg      1440
     tcctgcctta agaaactcct tttcgcagca ttgttcctcg tgctcctgtg aaaaaacgtg      1500
     ttttcgatca acttgacgca gtcctcagac gtagaccctg acgatccaat cgtggctgat      1560
     gaacaactag ttggtaatat tttaaataat gacaatgtat ctaatgatag atctgaactt      1620
     tcaaataatg ttatgcaaag ggatgtgtta ccatcaactt cttcagaagc aaatgctacc      1680
     gaaattttag tatattgcca aaattttaat cgcatgaaga gtgcatctaa aatgaacgaa      1740
     atttataaaa gaattctaac ttcatccttc tcagttgtta tgggcactga aactagttgg      1800
     aatgaaaaaa ttaaaagtga agaagttttt ggtaatagtt ttaatgtatt cagagatgac      1860
     cgagatttgg tccttaccca aagaatgtct ggtggtggag ttctcatcgc aatatctact      1920
     aaattcaatt cagaattaat tatttcatca aaacataaag aatttgaaca tgtgtgggtg      1980
     aaagcacaca tcgccggaga aacacatata tttgcttctg tgtattttcc gccagaccaa      2040
     gcttgcaaat catcatatga aattttcttt caaactgctg aagaaattgt atcccagtta      2100
     tctccagaat tcaaagtgca tatctatggc gactttaatc agcgtaatgc tgattttatt      2160
     cgtgattccg aaaacgaaag cattctgctt ccggttgtcg gtgaaaatga atcattacaa      2220
     tttatttttg aaaaagctgc atttttaggt ttaaatcaaa taaatcatgt gaaaaaccgg      2280
     caaaactgtt atttggactt cttattctca aacattatgg atgatttctg tgtgaatgaa      2340
     tctgtttctc cactatggaa aaatgaagca tttcacacag ctattgagta ctcaattttt      2400
     gttcacaata atcacaattc tgacaactgt gactttgaga atttctttga ttataaaaac      2460
     gctaattatg acggaattaa acaaaaatta aatagaatag attggcaatc cgttttgaaa      2520
     aaccagggag atttagaaat cgcagtgacg gatttttatt caattttgtc ggaaattatt      2580
     caaatggaag ttcctttatt gcgaagacgt cgtagaaatg ggtcgaaaaa ccctgtttgg      2640
     attaataagc aaataactaa tttaaaaaat cgtaagcaaa aggctcataa aatttacagg      2700
     caacaaaaat ctcgagaaag tttagaaaat tatttgtata ttgtcaacca acttaatcaa      2760
     gcaatatccg ctgcgcttga agagtacaac acaaaaatag aaaatgattt aaaatcttgc      2820
     cctaggaatt tcttcaatta tgctaaatcg aagatgaagt ctaacaattt tccatctaaa      2880
     atgacattgg atgatagagc agctgataat ccagatggta tgtgcaatct ttttgctact      2940
     tttttccaag agacttttac taacttttcg gataaagatc gtgactttga atatttttct      3000
     agttttcctg attttacaag cgatatcggt gtaagtcaaa tacttttaca ggacatttta      3060
     acaggactga agaatttaga ttccaccaaa ggatcagggc cagatggaat cccacctatt      3120
     ttactgaaaa acttagctaa tgaatttaca gcaccattat tttggctatt caacaagtca      3180
     cttgaaatga gcagatttcc aaaagaatgg aaaagatcgt atctcatacc catttacaag      3240
     tctggtagaa aatctgatgt tcgaaattat cgtggaattg ctattatttc atccattcca      3300
     aaactatttg aatcaattat aaataaaaat gtgttcagcc aaataaaaca tagaataacg      3360
     aatacacaac acggtttcta taaaggtcgt tctactacaa caaacctttt ggaatttgta      3420
     aattacactt tgaatgcaat ggatagaggt aaccacgtcg aagcacttta caccgatttt      3480
     agtaaggcat ttgacagact agacattcct atgttgattt tcaagctcaa taaaatggga      3540
     attgcgatga gactcctcaa ctggattgaa tcttatttaa cagatcgcca acaaatagtt      3600
     agatttgagg gaaaaatgtc taaacctgtt cacgttacat caggagttcc ccaaggttcg      3660
     catttaggtc cattgttatt tatattattt gttaacgata tttcatatgt gcttaaacat      3720
     cttaaaattc tgatttatgc cgacgatatg aaactttata tggaaatcaa tagcaacaaa      3780
     gatagcgaca tttatctgaa tgaaataagt atatttgata aatggtgtag caaaagctta      3840
     cttcaattaa acgtcaaaaa atgtaattta atcacatata gcagaaaacg gaatacacca      3900
     cagattactg tctctttagg aaatcaaatt gttcaaaagt gcgataagat tagagattta      3960
     ggtgtcatat tagattctaa acttaccttt actgatcatt ataatacgat tatccataaa      4020
     gcaaccaata tgttgagctt tattaagcgt tttagctaca attttcggga tccatatacg      4080
     attaaaacct tgtacattgc ttatgtaaga tcagttctag aatattgtag tattgtgtgg      4140
     tctccgcata taaaaataca tggtgataga atcgaatcag tacagaagca atttctttta      4200
     tatgccttac gcaaattagg ctggacaacg tttccactgc catcatacga ggctcgatgc      4260
     atgcttatcg atattcaaac cttaaatgag cgtcgcgaaa tagccatgat ttcatttatc      4320
     aatgatattg tatcgcagcg tattgattcc accaatcttt tatcatgttt gaatttctac      4380
     acgcccgcta gacagttaag aaatcggaat ttgtttgcat caaataatca tcgaactaac      4440
     tatgcaaaat tcggcccaat gaatcgaatg atgtctcttt ataatcagca ttgcacagaa      4500
     attgatctga ccatgtcgcg aacaaagcta agacaatatt ttaattcctt aagatataat      4560
     acaacataga attaagcaaa tgtgtagtct actattgatt gacgaaataa ataaataaat      4620
     aaat                                                                   4624
//
ID   CR1_Ele11   repbase;    DNA;    INV; 4952 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele11.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4952
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4952
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           14..811
FT                 /product="CR1_Ele11_1p"
FT                 /translation="MAFCDRMIHLRCSPTKLNKPFVNIIQSCPNLLWICNE
FT                 CVKLMKCARFKSTVSSFGNALELITEKQEIAHAELKREIAKQGQQIAXLSK
FT                 GIALSTPTHSKSGLTPRQPPLKRRRDESLLPNKPLVGGTKVATDNNVTTEV
FT                 LTVPEPAELFWLXLSRIHPSVKPEAIEKLVKDCVQCEDSVKVVPLIKKDTD
FT                 ISRMSFISFKIGMDPKLRETALSAETWPKGILFREFESGNSKNMWFPRLNT
FT                 PTVTISPAPGPSQYSTPTTGVEPMC"
FT   CDS           652..4782
FT                 /product="CR1_Ele11_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RRNLAKRYSVSRIRKRKLKKHVVSPPEHADRDNFSCT
FT                 WTFAVLNSYDRSRTNVLAGXEITDTRSSLGQSRYISNFLSPERNLATXPEE
FT                 APILLTAVEPLLPATISRSGPACESGEGVFQTPSNGKYKHNMNFASPESIL
FT                 VSSQPSNTSPLFRVATFPTSSSPGRTITASLEEAPYPPNTVEHFLPAACSR
FT                 PGPVFGEGDGVFQIPATGKYIQLTTFTPPKSILVCSHCVPHRSTPTPPFSI
FT                 SSPGRTLAEISEETPDPPNTVEPFLPATCSRPGPVLGVGNGVFRTPNIGKY
FT                 DQIKNSASPDSFSVSSQPERSFPWNGVTSFTQQSLHRSVQLLSSNGDTSSP
FT                 GRKITVGTKEAPDPPNTVEPLQPATCSRPGPVLGVGDGVFRSPNVGKYHPQ
FT                 SNASAPDSNPISSAAAAQQTASDVIIYYQNVGGMNGLIDDYHLAFLDHGYD
FT                 VIVLTETWLDSRTVSSYIFGEGYEVFRCDRNTNNSCKTVGGGVLVGVHTRL
FT                 KASLIENESWISVEQVWVAIQLSDRKLYLCVVYIPPDRTRDMDYINTHCQS
FT                 IAVVSEYATPSDEMIVLGDFNLPDIAWTPTHSGFLCPDYQRTSLHVGAVNL
FT                 LDCYSTATLAQINHVMNENGRYLDLCFVSGRDTAPFISTAPAPLVKVVSHH
FT                 PPLVVAIETNVVRDFISSPLVVAYDFRKADIHSIAELLSETDWDCILDITD
FT                 VNNAALTFSHVLAYVIERHVPKKVIRTDSRVPWMTNDLLLLKRKKKAALRR
FT                 FTKFRTWSSKCYYVRLNYEYKRLSRFCFHRHQSKIQRRLKLHPKSFWNYVN
FT                 EQRKEVGLPSSMTFNGTTGSNLEEICNLFSNKFASVFVNEQLSVDSINSAA
FT                 NNVPLANQTLSSIHLTQETISKAASQLKTSFKPGPDGVPAAFVKRMIGSLL
FT                 EPLLKVFQLSLTSGTFPTCWKTAEMFPVYKKGSKRDVNNYRGITSLNAVAK
FT                 LFELVVMDSLSAHCRQYLSADQHGFTIGRSTTTNLLCLTSYITESMNVRAQ
FT                 TDVIYTDLSAAFDKLNHEIAIAKLDRLGVGGSLLRWFRSYLTDRQLVVALG
FT                 EYRSPCFYASSGIPQGSHLGPLIFLLYFNDVHFVVEGRRLTFADDLKIFLR
FT                 ICSIEDCRYLQDQINVFAGWCDLNRLVVNPAKCSVITFSRKKQPIIFEYSI
FT                 FDTPIERVQCVKDLGVLLDSQLTFSHHIAYIVDKASRTLGFVFRTAKNFTD
FT                 IYCLKALYCSLVRATLEYGSAVWSPNYNNGCERIESVQRRFLRFALRRLPW
FT                 RDPLRLPSYESRCQLIDLQPLRIRRDVCRALTVVDTLNGRIDCEAILQQMH
FT                 LNVQPRPLRNSSMMRLPFRRTNYGLSNAVHGLQRVFNRVASIFDFHLTRNM
FT                 LRRKFSSFFAGRRD"
XX
SQ   Sequence 4952 BP; 1278 A; 1225 C; 1082 G; 1362 T; 5 other;
     atttatctcg tgtatggcgt tctgtgacag aatgattcat cttagatgtt cacctacgaa        60
     gcttaacaag ccgtttgtga acattattca atcgtgtccg aatttgcttt ggatttgcaa       120
     cgagtgtgtg aagcttatga aatgtgcccg tttcaaatca actgtgtcgt cgtttggcaa       180
     cgcgcttgag ctgataaccg aaaagcaaga aatcgctcac gctgagttga aaagagaaat       240
     agcgaagcaa ggacagcaga ttgctcwact gtcgaaagga atcgcattgt caactccaac       300
     ccactcgaaa tctggactta ctccccgcca accacctttg aaacgacgcc gtgatgaaag       360
     cttgcttccc aataaaccac ttgttggcgg caccaaagtg gccaccgata ataacgtcac       420
     wactgaggtg cttactgttc cagaacctgc tgagttgttt tggctgtamc tctctcgcat       480
     tcacccaagt gtcaaacctg aggcaatcga aaagctagtc aaagattgtg tacagtgtga       540
     agactcggtt aaagttgttc cattgataaa aaaggacacc gacataagcc gaatgagctt       600
     catctccttc aaaattggta tggatccgaa actacgtgaa accgctctta gcgcagaaac       660
     ttggccaaaa ggtattctgt ttcgagaatt cgaaagcgga aactcaaaaa acatgtggtt       720
     tccccgcctg aacacgccga ccgtgacaat ttctcctgca cctggacctt cgcagtactc       780
     aactcctacg acaggagtag aaccaatgtg ctagccggga gwgagattac tgacactcga       840
     tcatctctag gccagtctcg atacatctct aattttctgt caccggaacg caatcttgcc       900
     acckgccctg aggaagcccc tatcctactc accgcagtcg agcccctcct gccagcgacc       960
     atcagccgtt ccggtcctgc gtgtgagtct ggagaagggg tcttccaaac tcccagtaat      1020
     ggcaagtaca aacataacat gaattttgca tcgcctgaaa gcattttggt ttccagtcag      1080
     ccttcaaata catcaccttt gtttcgagtc gcaacgtttc caaccagttc atccccggga      1140
     cgcacaatta ccgccagcct cgaggaagcc ccatatcctc ccaacacagt cgagcatttc      1200
     ctgccagcgg cctgcagtcg tcccggtcct gtgtttgggg aaggagacgg ggtcttccag      1260
     atcccagcaa ccggcaagta tattcagcta acaacgttta cgccgcctaa aagcattttg      1320
     gtttgcagtc attgcgttcc acatcgttca actccaacgc cacctttctc catttcatca      1380
     ccgggacgca cacttgccga aatctctgag gaaacccctg atcctcccaa cacagtcgag      1440
     ccattcctgc cagcgacctg cagtcgtccc ggtcctgtgc ttggtgtggg aaacggggtc      1500
     ttccgaactc ctaatatcgg caagtatgat caaataaaga attctgcatc gcctgatagt      1560
     ttttcggttt ccagccaacc tgaacgctct tttccatgga atggagttac ttctttcacg      1620
     caacagtcgc ttcaccgttc cgttcaactg ctttcctcta atggagatac ttcatcaccg      1680
     ggacgcaaaa tcaccgtcgg cactaaggaa gcccctgatc ctcccaacac agtcgagcct      1740
     ctccagccag cgacctgcag ccgtcccggt cctgtgcttg gggtgggtga cggggtcttc      1800
     cgaagtccga atgtcggcaa gtaccatccg caatccaatg cttccgcacc tgatagtaat      1860
     cccatttcca gtgctgccgc tgctcaacaa actgcatccg acgtcataat ttactatcaa      1920
     aatgttggag gaatgaacgg tctgatagac gactatcatt tagccttttt ggaccacggc      1980
     tatgatgtca tagtcttgac cgaaacgtgg cttgattctc gaacagtttc gagctacatt      2040
     tttggagaag gatacgaggt attccgctgc gatagaaata cgaataacag ctgcaaaacg      2100
     gttggaggtg gcgtgcttgt gggagtccat acccggctta aagcaagtct aatcgaaaac      2160
     gaatcctgga tttctgtgga acaagtttgg gtggctattc agcttagcga ccgcaaactc      2220
     tatctatgcg tggtatacat ccctccggac cggactcgtg atatggatta catcaacacg      2280
     cactgtcaat caatcgccgt cgtctcggaa tatgccaccc ctagtgacga aatgatcgtt      2340
     cttggtgatt ttaacttgcc agacatcgca tggactccaa ctcacagtgg ttttctgtgt      2400
     cccgattatc aacgcacttc gcttcacgtt ggtgctgtca atcttcttga ttgttacagt      2460
     actgctactc tggctcagat caaccacgtg atgaacgaaa atggccgcta cctggatctc      2520
     tgtttcgtga gtggtcgtga tactgctcct ttcatatcga cggcccctgc acctttggtc      2580
     aaggttgttt ctcatcatcc gccgctagta gtcgccatcg aaaccaatgt tgttcgtgat      2640
     ttcatctcta gtccattggt tgttgcatat gactttcgca aagctgatat ccatagtata      2700
     gctgaattgt tgtccgagac agattgggat tgcattctag atataacgga tgtcaataat      2760
     gcagcactaa ccttctctca cgtcctggca tatgtcattg agaggcacgt tcctaaaaaa      2820
     gtcattcgga ccgattcacg tgttccgtgg atgaccaacg atcttctttt gctgaagagg      2880
     aagaagaaag cagcgctcag acggtttacc aaatttcgca catggtcatc gaaatgctac      2940
     tacgttagac tcaactatga atacaagcgt ttgagtcgtt tctgttttca tcgtcatcag      3000
     agtaaaatac aacgccgact aaaattgcat cccaaatcct tctggaatta tgtgaacgaa      3060
     cagcggaagg aagttggttt gccatcatcc atgacattca acggcactac tgggtctaac      3120
     ctagaggaaa tctgcaatct gttctcaaac aagtttgcaa gtgtgtttgt aaacgaacaa      3180
     ctttccgtcg attccatcaa ttccgcggcc aacaatgtgc ctttggctaa tcaaacgctt      3240
     agcagcatac accttactca agaaacgatc tcgaaagcgg catcacagct caaaacttcg      3300
     ttcaagccgg ggccagacgg tgttccagct gcttttgtga aaagaatgat cggcagcttg      3360
     ttggaaccgc ttctcaaggt atttcagctt tcgctaacca gcggtacatt tccgacttgc      3420
     tggaaaacag ccgaaatgtt tcccgtgtat aagaaaggaa gcaagcgtga cgttaacaac      3480
     tatcgtggga ttacatcgtt gaatgctgta gctaagctgt tcgagctggt ggtcatggat      3540
     tcgctaagcg cacactgcag acagtatttg agtgctgatc aacatggatt cactatcggc      3600
     cgttctacta ctaccaacct gctatgcctt acgtcgtaca tcactgagag tatgaatgtt      3660
     cgggcccaga cggacgtgat ttacaccgat ctatctgcgg cattcgataa gctaaaccac      3720
     gaaattgcaa tcgccaaact cgataggctt ggagttggag gtagcctttt gagatggttc      3780
     cgctcttacc tcaccgatcg tcaattagtg gtagctttag gagaatatcg atcaccctgc      3840
     ttttacgcgt catcaggcat accacaaggc agtcatctgg gtccgttgat tttccttttg      3900
     tattttaacg acgtacactt tgttgtggaa gggcgtcgac tgacgttcgc agacgaccta      3960
     aaaatttttc tgcgaatatg ctcaattgaa gattgccgtt atctccagga ccagataaac      4020
     gtcttcgctg gatggtgtga tctcaaccga ctagtcgtca atccagcaaa gtgctccgta      4080
     atcacttttt cacggaagaa acagccgata atcttcgagt atagcatttt tgatacgcca      4140
     atcgaacgag tgcagtgcgt taaggatttg ggtgttctgt tggattcgca actgacattc      4200
     tcccatcata tcgcttatat tgtcgataaa gcatcaagaa cgcttggctt cgtctttaga      4260
     actgcaaaga actttaccga catctattgc ctgaaagcgt tatactgttc cctcgttcga      4320
     gcaacattgg aatatgggtc tgcggtctgg agtccgaact acaacaacgg atgcgagcga      4380
     atcgaatcag ttcaacggag atttcttcgt tttgcacttc ggaggctacc ttggagagac      4440
     cctttacgcc ttccgagtta cgagagccgc tgccaactga tcgacttgca acctttgcga      4500
     attcgaagag acgtttgtag agctttaacc gtcgtcgata ctctaaacgg aagaatcgat      4560
     tgcgaagcta tcctgcaaca aatgcatctg aacgtgcaac ctcgtccact gcggaatagt      4620
     tcgatgatga ggcttccatt tcgtcgcacc aattatggat tgagcaatgc tgttcatggt      4680
     ctgcaacgtg tttttaatcg tgtggcgtcg atcttcgatt tccatctgac acgaaatatg      4740
     cttcgtcgta aattttctag ctttttcgct ggccggaggg actgaagaca tattttaagt      4800
     ttgaaatgtt ttacgatctt gactttttta tattcaatgt tttgtcatgt ttgttttgtt      4860
     atataatatg tatttttgtt tttattttta atatcattgg gactatacat agtctgttga      4920
     tgtaaaccta aataaataaa taaataaata aa                                    4952
//
ID   CR1_Ele12   repbase;    DNA;    INV; 4503 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele12.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4503
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4503
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1381
FT                 /product="CR1_Ele12_1p"
FT                 /translation="MNCEICLLDSVTDSIMWSCIGRSRKFHPACVGVNIQR
FT                 GSLRKKERRMDTSSFVLPCCSSCQTMVTASFEFKSLADQQAQLAEQINKNT
FT                 EVIHRSIQPNSLGVIDEAIDRLEALVTDVKNQLATAKSSCFAGNVNAVKNH
FT                 ITAMFDVALESSKSSISTAVQSIANNITDEVKGLSKDVRELASLTLDITSL
FT                 EPMRNNPLLEIDILNELKAISANIMTNSSTEVESLDPTLDSPPSLNAELNA
FT                 KKEDNSGWRLLGTRKVWKANWEEYDKRQLRRLDQQKQAEKARRRRKRNATR
FT                 NSTTSRNSRLENNVNNDCNNNYTNAPRRTVFGSRRYDNDNSNKSNMNANYL
FT                 PPDRELLAAAKNQFSRPPSNYRPTIRFEKRETLNPYQPDGPTNPQHIMTQR
FT                 SPPSPPCEACACKHSCFRRT"
FT   CDS           1348..4398
FT                 /product="CR1_Ele12_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRMQTFVFSSDLTLSSEEVDDNLTRSSEVEYKQTTQI
FT                 ALDSFNEINSSSSSVNSSGTSNEIITYCQNFNRMRSAAKLTEIHRKVSGCA
FT                 YSVILGTETSWDESIRSEEIFGNNYNVYRADRNYQWSEKKSGGGVLIAVSA
FT                 KLNSEIIVTTKFKEFEHVWAKVQLSGETHIFVSVYFPPNNACKETYDKFFS
FT                 VAENVMSSLPPEVKIHIYGDFNQRNIDFIPDMDNDYILLPVIGESELLQFI
FT                 FDKIANLGLNQINHVKNQQNCYLDLLLTNVSDDFCVNEALTPLWKNEVFHT
FT                 AIEFSQFISNTDFYIDNEFEEVFDFNSANYDNIRNKLNNINWQSILRSKDD
FT                 VNNSTEVFYNCLFKIILEEVPIIKRRCNGFSKHPVWFNKEIINLKNRKQKL
FT                 HKIYKKHKSQENLQVYLNMSVQLNSAMRLAYESYNSKTEQEIKNCPKNFFN
FT                 YVKSKLKSNNFPSTMYFNEKVGHTSQDICNLFSNFFQEVYTTYSEADRDYE
FT                 YFDFHPEFPNDVGISHINVHEILNGLKNLDATKGNGPDGVPPIFMKTLAIE
FT                 LTTPLFWLFNMSLESGVFPKMWKSSYLVPIFKSGKKSDIINYRGIALISCI
FT                 PKLFEAIINEKVFIQIKNRITTAQHGFFKGRSTATNLLEFVNYSLSAMENG
FT                 NHVEALYTDFSKAFDRVDIPMLIFKLQKIGIEAKLLKWIESYLTTRELIVK
FT                 FKGKKSTPIHATSGVPQGSHLGPLLFILFVNDLSFILDKIKVLIYADDMKL
FT                 YLEIKTAQDIHTFKHEVQIFHTWCQKSLLQLNVKKCNLISFNRKRDIPNVT
FT                 ITLGNQNVEKCNRIRDLGIILDSKLTFIDHYNTMINKANNMLGFIKRFAYN
FT                 FNDPYTIKTLFIAYVRSILEYCSIIWSPFSTVHDERIESVQKQFLLYALRK
FT                 LGWTEFPLPSYKARCMLINIQTLRERREYAMISFINDIVSHKVDSPELLSK
FT                 LNFYVPSRRLRHRELFAINYHRTNYAKFGPMNQMMTTYNKHYNSIDLTWSK
FT                 AKLKQYFRTLS"
XX
SQ   Sequence 4503 BP; 1561 A; 831 C; 806 G; 1305 T; 0 other;
     cattgcgtta ttgatcgtca atcagttcgg acgcgttttt aatcgctccc ggtcgcgcac        60
     ttttcattta aattgttatt gctaacgttt cgtttttttt ttgtacgtgc tagataccgg       120
     tgtaaagtgt tttgtgaaaa tgaattgtga aatttgcttg ttggactccg ttaccgactc       180
     aattatgtgg tcgtgcattg ggcgctcgcg taaattccac cctgcttgcg tgggagtcaa       240
     tattcaaaga ggatcgctcc ggaagaagga aagaagaatg gacacttcat cctttgtgtt       300
     accatgctgc agttcatgtc aaaccatggt tactgcaagc tttgagttta agtcgcttgc       360
     tgatcaacag gcgcaactag cagaacaaat taacaagaac acggaggtga tccatcgttc       420
     gattcaaccg aacagtttgg gcgtgatcga tgaagccatt gaccggttgg aagctctagt       480
     gaccgatgtc aaaaatcagc tcgcgacggc aaaaagcagt tgttttgctg gcaatgtaaa       540
     tgctgttaaa aaccacatca ctgcgatgtt tgatgttgcg cttgagtcgt ccaaatcaag       600
     catatcaacg gcagtgcagt caatagcaaa caatatcact gacgaggtga aaggtcttag       660
     caaagatgta agagaattag catctttgac cttagacata acttcgttgg agcctatgag       720
     aaacaaccca ttactggaaa tagatatttt gaatgagctg aaagccatat cagcaaatat       780
     tatgacgaac tccagcaccg aagttgaatc actagacccc acattggatt cacctcccag       840
     tttaaatgct gaattgaatg caaaaaaaga ggacaactct ggctggcgac ttttaggtac       900
     gaggaaagta tggaaagcga attgggagga atacgacaaa cgccaactcc gccgcttgga       960
     tcagcaaaag caggccgaga aggctcgaag gcgacgtaag cggaacgcaa ctcgaaattc      1020
     tacaaccagc agaaacagcc gtttggaaaa taatgtaaac aacgattgca acaacaatta      1080
     caccaatgcc ccgcgccgca cagttttcgg cagtcgtaga tacgataacg acaacagcaa      1140
     taaatctaat atgaacgcaa attatcttcc acccgatcgt gaactccttg cggcggcaaa      1200
     aaatcaattt tctcgaccac catctaatta tcgtccaact attcgatttg aaaaacggga      1260
     aacactcaac ccttatcaac cggacggccc cacgaatcca caacacatca tgacacagag      1320
     aagtccacct tcaccacctt gcgaagcatg cgcatgcaaa cattcgtgtt ttcgtcggac      1380
     ttgacgctct cttcagagga agtagatgac aacttgacgc gttcttcaga ggtagagtat      1440
     aagcaaacga cccagatagc attagatagt tttaatgaaa ttaactcatc gagttcttca      1500
     gttaactcat caggtacttc aaatgaaatt ataacttatt gtcaaaattt taacaggatg      1560
     agaagcgcag ccaaattgac tgaaattcat cgtaaagtat caggttgcgc atactctgtt      1620
     attctgggaa ctgaaacgag ttgggatgag agtatacgga gtgaagaaat ttttggaaat      1680
     aattacaatg tttatagagc tgatcgtaat tatcaatggt ctgaaaaaaa gtcgggtggc      1740
     ggagttttaa tcgcagtttc agcaaaattg aactctgaaa ttatcgttac cactaaattt      1800
     aaagaatttg agcacgtgtg ggcgaaagtg caattgtctg gcgagacaca tatttttgtc      1860
     tccgtatact ttcctcctaa caatgcgtgc aaagaaacat acgataaatt ttttagtgta      1920
     gcggaaaatg ttatgtctag tttaccccct gaagttaaga ttcatattta cggtgatttt      1980
     aatcaacgca acattgattt tataccagat atggacaatg attatatatt actcccagtc      2040
     attggagaaa gtgaattgct acagtttata tttgacaaaa ttgcaaactt aggtcttaat      2100
     caaatcaatc atgtaaaaaa tcaacaaaac tgttatcttg atctcttgct gacaaacgtc      2160
     tctgatgact tttgtgttaa tgaggcattg actccacttt ggaaaaatga agtgtttcat      2220
     acggcaatag aattttctca gtttatttct aatacagatt tctatattga caatgaattt      2280
     gaggaagtat tcgactttaa ttcagctaac tatgacaaca ttagaaataa attaaataac      2340
     attaactggc aatcgatttt gagaagcaaa gatgatgtaa ataattcaac agaagttttc      2400
     tacaactgtt tgttcaaaat aatattagaa gaagtaccaa tcattaaaag aaggtgtaat      2460
     ggtttttcaa aacatcctgt ttggttcaat aaagaaataa taaatttgaa gaatcgtaaa      2520
     cagaaactac ataaaattta caaaaagcat aaaagtcaag agaatttaca agtatatttg      2580
     aatatgagcg tacagctcaa ctcagcaatg cgattggcat atgaaagcta caactccaaa      2640
     actgagcaag aaatcaaaaa ctgtccaaag aatttcttca actatgttaa atctaaacta      2700
     aaatccaata actttccttc tacaatgtat tttaatgaaa aggttggcca tacctcacaa      2760
     gatatatgca acttattttc aaattttttt caagaagtat acacaacata ctctgaagct      2820
     gatcgtgatt atgaatattt cgatttccat cctgaatttc ctaacgatgt tggtatcagt      2880
     catataaatg tgcatgaaat attgaatggt ttgaaaaact tggatgcaac caaaggaaat      2940
     ggaccggatg gagttccacc aatcttcatg aagactttag caattgaatt aactactccc      3000
     ttattttggc tctttaatat gtcactggag tctggagtct ttccaaagat gtggaaaagc      3060
     tcataccttg ttcccatttt caaatctggc aaaaaatctg atattattaa ctatcgtggc      3120
     attgccctta tttcgtgcat cccgaagctc tttgaggcca tcataaatga aaaagtattc      3180
     atccaaatca aaaacagaat aactacagcg cagcacggct tttttaaagg gcgatcgaca      3240
     gccactaatt tgctcgaatt tgtaaactat tcattgagtg ctatggaaaa tggaaatcat      3300
     gtagaagctt tatacacaga ttttagtaaa gcatttgacc gtgttgatat acccatgctt      3360
     atatttaaac tgcaaaaaat tggtattgaa gccaaattgc tgaaatggat tgaatcatat      3420
     ttaaccactc gcgagctaat agtgaaattc aaaggaaaaa agtcaactcc aatacatgcc      3480
     acttcagggg ttccacaagg ctctcattta ggtccgcttt tgtttatact gtttgtgaac      3540
     gatttgtcgt ttattcttga caaaataaaa gtattaatct atgctgacga tatgaaactt      3600
     tatttggaaa taaaaactgc acaggacata catactttta aacacgaagt acaaatcttc      3660
     cacacgtggt gtcagaaaag cctactacaa ctgaatgtaa aaaaatgtaa cctgatatct      3720
     tttaacagga aaagagacat tcccaatgta acaataactt taggcaatca aaatgttgaa      3780
     aaatgtaata gaatcagaga cttaggcata attttagact caaaacttac tttcattgat      3840
     cactataaca ctatgataaa taaagctaat aatatgttag gcttcattaa acgcttcgct      3900
     tataacttca atgatccata cacaataaaa acattgttca ttgcctatgt tagatcaata      3960
     cttgaatatt gcagcataat ttggtcacct ttttcaacag tacatgatga aaggatagag      4020
     tcggtgcaaa aacaattttt attatatgct cttcgcaaat taggttggac agaatttcca      4080
     ttaccatctt acaaagctag atgtatgttg attaatattc aaacactaag agagcgtcgt      4140
     gaatatgcaa tgatttcatt tataaacgat attgtatccc ataaagttga ttcaccagaa      4200
     ttattatcta aattaaactt ttatgtacca tccagacgtt tacgccatcg agaactattt      4260
     gcaatcaact atcaccgtac taattatgca aaatttgggc caatgaacca aatgatgact      4320
     acttataata aacattacaa ttcaatcgac ttaacttggt ccaaagcgaa gctaaaacaa      4380
     tacttccgca cattatctta agaagaaaaa ttaggtaatt gaatgtagaa gtgtaactag      4440
     cgcataagaa actctctgta acggtctaca aacatgattg acgacaataa ataaataaat      4500
     aaa                                                                    4503
//
ID   CR1_Ele13   repbase;    DNA;    INV; 4460 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele13.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4460
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4460
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           702..1529
FT                 /product="CR1_Ele13_1p"
FT                 /translation="MPSVCEKCANDLVGEIIKCGGFCTGQFCLRCSKIPSE
FT                 LYPTIKTHQHLVWMCDACRNLLKNSRFTKAMTSISAANDCIVEALKTDIRD
FT                 SILTEVRNEIRSSFKKMIDSVPLTPLNPIPLQLPFSSRKKRPRDAENEDEN
FT                 NRRPAKLICGTSSSSNAVVPTVNIAEPRQEQFWLYLSGIHPSVPDENIKQL
FT                 AQESLGTNELTVAKLVPKDKDIRSLTFISFKIGMPSNLKEKAMSATTWPIG
FT                 IKFREFESAGTTQPVFWIPPVTQPETNNPTAIQSM"
FT   CDS           1439..4399
FT                 /product="CR1_Ele13_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="VRIGWYYTTGFLDTTGDSAGNEQPDSHSIDVIPVQIP
FT                 SVHDATIPVTVYYQNVRGLRTKTNALHLSLSSCDYDIIAFTETWLRDDISN
FT                 AELSSNYSLYRCDRSSSTSNLTRGGGVLIGVRKSLQCSFVDVPNACKLEQV
FT                 AVKVSLANLSMYICCIYVRPNSDPEIYRQHSRSVRYLLDLANDTDMVVVLG
FT                 DYNLPNLSWNFDDDLNAYLPANASSEHEITLTQSILDTGLSQVNDITNCNG
FT                 RLLDLSFVSDTQKIESLEPPNSLLPIDAHHRPFVLKCDISSVTDTQDNIFC
FT                 YDFKRCDVEVLNDALARVDWSSLLTDCHIDTAVSRFYETINNIIAELVPLK
FT                 KIWRTHHKCPWWNRELRTMRNRLRKFRKKYFKHRSADNKQSLQRMENLYDE
FT                 LRTTAFRNYIRRLESDFKHDPFSFWSFVKSRKHGQGVPSDMVYRSCKASSF
FT                 RDTANLFADFFSTVYSNQQFNAVQTASNSSVHLPRLEVSTNDVHTALSDVD
FT                 PTKGAGPDRLPPVFFKKCASSLSLPVSIIFNKSLLDGIFPEAWKIASITPI
FT                 HKSGSIHDVENYRPISILNCLGKVLEKMVHEVLYRSVRHVISDSQHGFMKN
FT                 RSTTTNLMTFANKLTKRIEKRQQVDAVYIDFSKAFDKVPHTLAVEKMRHIG
FT                 LPDWIINWTSSYLTNRKSYVKISDAFSDTFSVPSGVPQGSHLGPLIFIIFV
FT                 NDICSLLRCDCLMFADDLKIYRTVLSPLDCCALQEDLNIVLDWCGRNGMQV
FT                 NISKCKVISYSRQRSPFFFPYRLDSEQLERVDKIRDLGVVIDSKVRFNEHI
FT                 SIVTAKSYALLGFIRRNTAAFDDVYALKTLFCSLVRSTLEYAVQVWAPYHN
FT                 EQCHRIESVQKSFLRYALRRLPWSNPIELPAYEDRCQLIDIETLANRRKKL
FT                 RRLFVFDLIMNRIDCNYLLGNICFYAPVRTLRNRSILWIPTRRTQYAFFDP
FT                 FDDSCRLFNDVSDKFDLNISKNVFASRIRNLD"
XX
SQ   Sequence 4460 BP; 1215 A; 1102 C; 908 G; 1234 T; 1 other;
     actggcaaca ctgtcgctac aagttgttat tgtttgtgtc tcgctccaca taaattgtgt        60
     ttcttcgctg ttaccgatcg cctaaaaacc accgctcgtc aaattccacc tacaacaacc       120
     tcccgcaccg tgttcattcg ctgctcacct gtatcaaaca aggtagggct gtgaaatagc       180
     tccgcaaaat ttgggcttga gagtgattag ctgtgcatac ccagccatca tttcacctcg       240
     ccactcaccg ccgcctccac cacccaaaac tcgccactta ccgccgcctc accgtcgccg       300
     ccaccaccct aaaacactcg aaccaacaag caacccacac gatagtgcgt taatattcca       360
     cgtcaagcca ctgtaacgaa aaccaccacc aaattcgcta ccaataaaca tccacctgct       420
     gctgtgtttt catttcccga ccatccgaaa gaatctccag tacctgccaa aaataaacaa       480
     tctgcatatc atctggtcat ctggtcacga tmacatcgct acatcatcaa cgtcattgtt       540
     gcaaggtaac ccacacatcg gtgctcgttg tacgtgttga tcgaagcata tctccatttg       600
     acatcccgtc attcgtcgtt tgtttgagat cagcgccatc tgttggtgga tacgtgattc       660
     agccctattt atccctttca agactggttg cataattcga aatgccttct gtctgtgaaa       720
     aatgcgcgaa cgatctggtc ggtgaaatca tcaaatgtgg cggtttttgc actgggcaat       780
     tttgtctcag atgctctaaa atcccatctg agctgtatcc gaccataaaa acacatcaac       840
     acttggtgtg gatgtgcgat gcgtgtcgca atttgttgaa aaactcaagg ttcacgaaag       900
     caatgacatc gattagtgca gccaacgatt gcatagttga agctcttaaa acggacattc       960
     gagatagcat attaacagag gttcgcaacg aaattcgttc gagttttaaa aagatgattg      1020
     attccgttcc actgactcct ctaaacccta ttccgctgca actgccattc tccagcagaa      1080
     aaaagcgccc acgtgatgct gaaaacgaag atgaaaataa tcgccgccca gctaagctaa      1140
     tttgcggcac tagttcgtct tctaacgcgg tggtcccgac ggtgaatatt gctgagcctc      1200
     gtcaagagca gttttggctt tacctgtctg ggattcatcc cagtgtacct gacgagaaca      1260
     taaagcagct tgctcaggaa tctttgggta ccaatgaact caccgttgca aagttggttc      1320
     ccaaggacaa ggacatacga tcgctcacct tcatttcttt caaaatcgga atgccatcca      1380
     acttgaagga gaaggcaatg tctgctacaa cgtggccgat tggtatcaaa ttccgtgagt      1440
     tcgaatcggc tggtactaca caaccggttt tttggatacc accggtgact cagccggaaa      1500
     cgaacaaccc gacagccatt caatcgatgt gattcccgtt caaataccat cagttcatga      1560
     cgccaccatt cccgtaaccg tatactatca aaacgttcgc ggtctacgca caaagacgaa      1620
     cgctctacat ctctcgctga gctcgtgcga ttatgacata attgccttca ccgagacttg      1680
     gcttcgtgat gatatctcca atgcagaatt atcttcaaac tactctctgt accgttgcga      1740
     ccgcagctct tccaccagta atctaacgcg tggtggtggt gtgctgattg gggtgcgaaa      1800
     gagtttgcag tgtagtttcg ttgatgttcc gaacgcctgt aaactggaac aagttgcagt      1860
     caaagtaagt ctcgctaacc tgtcgatgta tatctgctgt atttatgtta gaccaaatag      1920
     tgatccggag atttaccgac aacactctcg cagcgttcgg tatttgcttg atctcgcgaa      1980
     cgacaccgac atggtcgttg ttcttggtga ctataacctg ccaaacctct cttggaattt      2040
     cgacgatgat cttaacgctt atctacctgc caacgcctct tctgagcatg agatcacact      2100
     aacccaatcg attctcgaca ctggactctc tcaggtgaac gatattacga actgcaatgg      2160
     gcgtttgttg gatttgtcat ttgtatctga cacccaaaaa attgaatctt tggaaccgcc      2220
     aaattcatta ctcccgatcg acgcgcatca cagaccattc gttctgaaat gcgacatttc      2280
     gtctgtaact gacacacaag acaatatttt ctgctacgat tttaagagat gtgatgttga      2340
     agtgcttaac gatgcgttgg ctcgagtgga ttggtcatcc cttctaaccg attgccatat      2400
     tgacactgcc gtttctcgtt tctatgaaac cataaataac atcatagccg aactagtgcc      2460
     cctcaaaaaa atctggcgaa ctcatcacaa atgcccctgg tggaaccggg agttgaggac      2520
     aatgcgaaac aggcttcgaa aattccgtaa aaagtacttc aagcaccgat cagcagataa      2580
     taagcagtct ctccagagaa tggaaaacct gtatgatgag ctgcgaacaa ccgcatttcg      2640
     gaattacatc agacgactgg aatccgactt caagcacgac cccttttcgt tctggtcttt      2700
     cgttaaaagc aggaagcacg gccagggagt cccgtcggac atggtttacc gcagctgtaa      2760
     agcgtccagt ttccgagata ccgcaaatct ctttgccgac tttttttcaa ccgtttatag      2820
     caaccaacaa ttcaacgccg ttcaaactgc ttctaacagt tccgtacatc tacctcgcct      2880
     ggaagtatca acaaacgatg tccatacagc gctgtcagat gttgacccga cgaaaggtgc      2940
     tgggccggat cgccttcctc ccgttttctt caaaaagtgt gcgtcctcgc tctcgttacc      3000
     agtatcgatt attttcaaca agtcgttatt ggacggcatc tttcctgaag cgtggaagat      3060
     tgcatctatt acgccaattc acaaaagtgg cagtatacac gatgtcgaga attatcggcc      3120
     gatctcaata ctaaactgct tgggtaaggt acttgagaaa atggttcatg aagttcttta      3180
     ccgctccgtc cgacatgtga tatctgatag tcaacatgga ttcatgaaaa accgttcgac      3240
     gactacaaat ctcatgacat ttgcaaacaa attaacgaag aggatcgaaa agaggcagca      3300
     ggttgacgca gtttatattg atttctccaa agctttcgat aaagtgcccc acacgttagc      3360
     tgtggagaaa atgcggcaca ttggtttgcc cgactggatc atcaactgga cgtcatcgta      3420
     cttaactaat cgtaagagtt acgtaaaaat tagcgacgca ttttccgata ccttctccgt      3480
     tccctccgga gtcccacaag gcagccacct tggcccgtta atttttataa ttttcgtcaa      3540
     cgacatctgt agtcttcttc gctgtgattg tttgatgttc gcggatgact taaaaatcta      3600
     ccgcaccgta ttgtcaccgt tggactgctg tgctcttcag gaagatctga acattgtttt      3660
     ggactggtgc ggaaggaatg gaatgcaagt gaacatctcg aaatgcaagg tgatatccta      3720
     cagtcgtcag cgctctccat tcttcttccc gtacagactc gacagtgaac aattggaacg      3780
     tgttgacaaa attcgggatc ttggcgtcgt tattgactct aaagttaggt ttaacgagca      3840
     tatctctatc gtcacagcca aatcgtatgc actattgggt ttcatccggc gcaacacagc      3900
     tgccttcgac gacgtgtatg ctttaaaaac tcttttttgc tccttagtgc gtagcacttt      3960
     ggaatatgct gtccaagtct gggcaccgta tcataacgaa cagtgccatc gaatagagag      4020
     cgtccagaaa tcgtttctta gatacgcgtt acgtcgtcta ccgtggtcca atcccatcga      4080
     attaccggcc tatgaagacc gttgccaact aattgacata gaaacgctag cgaaccgtag      4140
     gaaaaaattg cgcagattat tcgtgtttga cctgattatg aatcgtattg actgtaatta      4200
     tttgttaggt aatatttgtt tttatgctcc tgtacgcact cttcgtaatc gttctatttt      4260
     gtggattcct actagacgca ctcaatacgc tttttttgac ccttttgacg atagttgtag      4320
     attatttaat gatgtttccg ataaatttga cctgaatatc tctaaaaatg tttttgctag      4380
     taggataagg aatctagatt aagtcacaat ctgtgcaacc ataagtgttg aagatgtaga      4440
     accaaataaa taaataaaaa                                                  4460
//
ID   CR1_Ele14   repbase;    DNA;    INV; 4747 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele14.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4747
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4747
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 18
CC   sequences with >98% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1194
FT                 /product="CR1_Ele14_1p"
FT                 /translation="MAKQCGKCLEPITGIDVVVCRGYCGAFFHMTSCTNVT
FT                 RALTSYFTTHKKNLFWMCDRCAELFENSHFRALTNHADERSPLNSLTSAIT
FT                 DLRSEIKQLNSKPSTSISPATNIRWPTIDQQRSAKRRRENDSNVRVTDQCR
FT                 TGSKKANENVVSVPICQTDVNQKFWLYLSRICPDVSVDSVSAMIKANLELT
FT                 SDPTVVKLVPKDKDISTLTFVSFKIGLDPSLKSKALDPETWPEGLLFREFE
FT                 DFGIPKFRKPLPLKLSIPPLQQQPLQSPMTPTMEC"
FT   CDS           1089..4637
FT                 /product="CR1_Ele14_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GFWDSKISETTPAEIVDTAVTTATIAITDDSNNGVLT
FT                 LVNPGYNRCTSFGETQLFSCSPASSSSPPGCTPASLWEAPDPLGTVEPLLP
FT                 ATCSHPGPVSECGDGVFHHENAGKYNCTKDDSLPLTLIASSNLVETHSRLY
FT                 NRRFVDVDDFRSSRSISSSSPGCMPASFLGAPYPLGTVEPLLPATRSHPGP
FT                 VSECGDGVFQHVDAGKYKCIKNNILPSTSIVSSRDDNDDAIWIYYQNVRGL
FT                 RTKIDDLLLATTDCNFDVIIMTETGLDNCINGQQLFGSGFNVYRCDRSPVN
FT                 SSKSRFGGVLIAIAQRYVSSVERTVSAQSLEQICVSSTIKGRKVFMCAIYI
FT                 PPDRSQDVNVINDHLSALNELCEKCSLGDAVLVCGDYNQPRMNWCLVDNTV
FT                 QCNSRQLPLASSTLLDGMDYLCLAQRNLVRNQLDRTLDLVFCLSECVADVD
FT                 CSLAPMLPVDSHHPPLEISLPACLVRDERIAQPQENRPLNFRQIDFDALLD
FT                 YLLIIDWNEIFLSNDIDQVAENFCSILNNWLALNVPRIRPSVSPAWSTPRL
FT                 RELKRARNACQRKLRRQRTPSNKRKFQRASNAYRFKNASLYKLYILRVQRD
FT                 LRRNPRGFWRFVNSKRKSSAIPTNVFLNEQCARTAVESSQLFARHFEAIFA
FT                 ANTASIQEVADATRDVPADVVDLSAFTINPDMVLLAAKKLKRSYVPGPDGL
FT                 PAIIICRCISALVQPLCDIFNQSLQQAKFPRIWKQSFITPVFKRGDRHDVT
FT                 NYRGITSLSAVSKLFEIIMCGIIFETTKCYISVEQHGFMPSRSVTTNLLTF
FT                 TSKCMKSMEEKAQVDVIYTDLKAAFDKIDHRILLHKLSRLGVSTHLVSWME
FT                 SYLTGRELRVKIDGCVSLPFSNKSGVPQGSNLGPLLFIIFFNDAGLVLGEG
FT                 FKLIYADDLKLYIVVRTENDCMRLQNSLTLFADWCRRNKLIISVEKCQVIT
FT                 FHRKMHPIVFHYEIDGIILNRVDHVTDLGVQLDEKMSFELHRSAIISKATR
FT                 QLGFISKVAKDFSDPHCWKSLYCSLVRPILENASVVWHPHQLTWSLRIERI
FT                 QKRFIRLALRNLPWRDPDNLPPYPDRCRLLGLETLDRRRKVQQSLLIAKLL
FT                 NGEVDAPELLSLLEFRVPNRVLRSTTLLQSSFHRTVFGYNEPISACIRAFS
FT                 AVEEFFEFDEPTRHFANRIRSVVQ"
XX
SQ   Sequence 4747 BP; 1273 A; 1092 C; 1036 G; 1346 T; 0 other;
     tttggcatca ctgcttggtg tatgttatgc aaacaaaatc cgctcgtgat tattatttta        60
     tttttgttgt gatatcgtaa ccattaaatc gttattttgt tcccccgtgc taatattgcg       120
     tcttgtgaaa caataccgtg tatgtttatg catttgtgct gtgccgtggt gataaatatc       180
     aatatttgag tgaaggttgt tgctgttcgt ggttcacacc aaacgaaaag ccttcacaat       240
     tcctgtgcac ttttttcaac cggagcgaca tatactggca aataacggaa acatcgacca       300
     gaagctcaac gtctagcttt atccgttcag cattatcgtt ggaagtctac gcgcaggcga       360
     tttacgatgg cgaaacagtg tggaaagtgt ttggaaccca taactggcat cgatgtggta       420
     gtctgccgtg gctattgtgg agcttttttc catatgacat catgtacaaa cgtaacccgc       480
     gcattgacat catatttcac tacccataaa aagaatcttt tttggatgtg cgatagatgc       540
     gcggagttgt tcgaaaattc tcattttcgt gcgctcacca atcatgccga tgaaagatca       600
     cctctcaact cgcttacatc agccatcacg gatctacgca gcgaaattaa gcaactgaat       660
     tcgaagccct caacttcaat ttctccagca accaacattc gctggccaac aatcgaccag       720
     caaaggagtg ctaaacgacg acgcgaaaat gattcaaacg tacgcgtgac tgatcagtgt       780
     cgcacgggta gcaaaaaagc aaatgaaaac gtagtatccg ttcccatttg ccaaacggat       840
     gtgaatcaaa agttttggct ttatctgtcc agaatttgcc ctgacgtttc cgttgattct       900
     gtctccgcta tgattaaagc taatctagag ttaacttctg atccaacagt agtaaaactc       960
     gttccaaaag acaaagatat cagcacgctt actttcgtgt cttttaaaat tgggctggat      1020
     ccgtcgctta aaagtaaagc acttgaccct gaaacttggc cagaaggact tctgtttcga      1080
     gaatttgagg attttgggat tccaaaattt cggaaaccac tcccgctgaa attgtcgata      1140
     ccgccgttac aacagcaacc attgcaatca ccgatgactc caacaatgga gtgctaactt      1200
     tagtcaaccc tggctacaat cgatgcacca gcttcggcga aacccagttg tttagctgct      1260
     caccagcatc aagcagttca ccaccgggat gcacgcctgc cagcctttgg gaagcccctg      1320
     atcccctcgg cacagtcgag cctctcctgc cagcgacctg cagtcatccc ggtcctgtgt      1380
     ccgagtgtgg tgacggggtc ttccatcatg aaaatgcagg caagtataat tgtactaagg      1440
     acgactctct gccgttaacg ctcattgctt ccagtaacct tgtggagacg cattcacgct      1500
     tgtataatcg tcgctttgtg gatgtagacg atttccgatc gagccgttcg atttccagtt      1560
     cttctccggg atgcatgcct gctagctttt tgggagcccc ttatcccctc ggcacagtcg      1620
     agcccctcct gccagcgacc cgcagccatc ccggtcctgt gtccgagtgt ggcgacgggg      1680
     tcttccaaca cgtagatgca ggcaagtaca aatgcattaa gaacaatatt cttccctcaa      1740
     catcgattgt ttccagtcgt gacgataatg atgatgctat ttggatttat taccaaaacg      1800
     tgcgtggcct gaggacgaaa atagatgacc tgcttttggc gacaaccgac tgcaatttcg      1860
     acgtgatcat catgaccgag accggattgg acaactgcat caacgggcaa cagctttttg      1920
     gttcaggctt caatgtgtat cgctgtgatc ggagccccgt caacagtagt aaatctcgat      1980
     ttgggggtgt tctaattgct attgctcagc gttatgtaag cagcgttgag cgaaccgtaa      2040
     gtgcgcagag tttggagcag atctgtgttt cgtcgacaat caaaggtagg aaggttttca      2100
     tgtgcgcgat ctatattcca ccggatagaa gtcaagatgt taatgtgatc aatgaccacc      2160
     tttcggcatt gaatgaactt tgcgagaaat gttcacttgg cgacgctgtt ttggtgtgtg      2220
     gcgattataa tcaacctcgt atgaactggt gcttggttga taacactgtt caatgcaaca      2280
     gtcgtcaact accgttagcc agcagcactc tgctggacgg aatggattat ttgtgcctcg      2340
     cccaaaggaa tcttgttcgc aaccagctgg atcgcactct tgacttggtt ttttgccttt      2400
     ctgaatgtgt ggccgatgtt gactgttcgt tagctccgat gttacccgtt gattctcatc      2460
     atcccccgct cgaaatctct ttacctgcgt gtttggtacg cgacgaaagg attgcccaac      2520
     ctcaagaaaa ccgaccactg aattttcgtc aaatcgactt tgacgctctt ctggactatt      2580
     tgctaatcat agactggaac gaaatatttc ttagcaatga cattgatcaa gtggccgaaa      2640
     atttttgctc cattttgaac aattggcttg ctttgaatgt cccacgaata cgaccgtcag      2700
     tttcgcccgc ctggagtacg cctcgcttgc gggaactaaa acgcgcgcgt aatgcttgcc      2760
     aacgtaaact acgtcgtcaa cgcacgccaa gcaataaacg aaaatttcaa cgagccagca      2820
     atgcataccg ttttaaaaat gcctctcttt acaagttgta catattgcgt gtacaaagag      2880
     atttgagaag gaatcctcgt ggtttttggc gcttcgtcaa ctccaaacga aaaagttctg      2940
     caattccaac gaacgtcttt ttgaacgagc aatgtgctag gactgccgta gaatcaagcc      3000
     aattattcgc caggcacttt gaagctatat ttgctgcaaa caccgcatca atacaggaag      3060
     tagctgacgc aactcgagat gtccctgcag atgttgttga tcttagtgca tttaccataa      3120
     atcccgatat ggtcttattg gccgcgaaaa agctaaaacg gtcgtatgtt cctggtcctg      3180
     atggattacc ggcaattatt atttgtcgtt gtatttctgc attggtacaa ccattgtgcg      3240
     atattttcaa tcagtcactc cagcaagcaa aattcccacg catctggaaa caatcgttca      3300
     taacacccgt tttcaaacgc ggtgatcgcc atgatgttac aaactatcgg ggtattacaa      3360
     gcctgtcagc tgtttcgaaa ctgttcgaaa taataatgtg tggaattatc ttcgaaacaa      3420
     caaaatgcta catctccgtt gagcaacacg gattcatgcc tagccgatcg gttactacaa      3480
     acttgttgac ttttacgtca aaatgcatga agagcatgga agaaaaggca caagttgacg      3540
     taatttatac cgacttaaaa gctgcgttcg acaagattga ccaccgaata cttttgcaca      3600
     aactgtcccg cctcggagta tctacgcatt tggtttcttg gatggagtcg taccttacgg      3660
     gacgagagct gcgagtaaaa atcgatggat gtgtatcatt acccttttcg aacaagtctg      3720
     gtgtcccaca aggaagcaac cttggaccgt tgctatttat tattttcttt aacgatgctg      3780
     gcttggttct cggtgaagga tttaagctga tttatgccga tgatctcaaa ctgtacattg      3840
     tagtacggac tgaaaatgat tgtatgcgtc ttcagaactc gttaacactg tttgccgatt      3900
     ggtgccgcag aaacaagcta attattagcg tagagaaatg tcaggtgatc acttttcacc      3960
     gcaagatgca tccaattgtt tttcactacg aaattgatgg gatcattctc aacagagttg      4020
     atcatgtgac tgacttaggg gttcagcttg atgagaaaat gtcgtttgag ctgcatcgtt      4080
     ctgcaatcat ctcaaaagca acgcgtcagc taggctttat ttccaaggtt gccaaggatt      4140
     tttcagaccc gcactgctgg aaatcattgt attgttccct ggtacgccct atcttggaaa      4200
     atgcatccgt cgtttggcat ccgcaccaac tcacgtggag tctaagaatt gaacggattc      4260
     aaaagaggtt cattcgtttg gcactaagaa acttgccatg gagggacccc gataacctgc      4320
     caccgtatcc ggatagatgc cgactcctgg gactagaaac attggatcga cgaagaaagg      4380
     tacagcaatc gttgcttata gcgaagttgc taaatggcga agtcgatgct ccagaactgc      4440
     ttagtttgct agaatttcgt gttcctaacc gagttctccg gagtacaaca ctgctccaat      4500
     caagtttcca tcgcaccgta tttggataca acgaacccat ctcagcgtgc atccgagcat      4560
     tctcagctgt cgaagagttt ttcgagttcg atgaaccgac gaggcatttt gctaatagaa      4620
     tacgatctgt agttcagtaa tctgtgttaa gtgtatgtta tgttcaagtt tttattcatt      4680
     aagactaatt tgtcagatgg attattttaa atacaaatac aaatacaaat acgaatacga      4740
     aataaaa                                                                4747
//
ID   CR1_Ele15   repbase;    DNA;    INV; 5735 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele15.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5735
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5735
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           383..1297
FT                 /product="CR1_Ele15_1p"
FT                 /translation="MEACHACSTLMESGRVINCNGTCGRLYHFTCVGMSKS
FT                 QFTAWTAXIGLYXFCESCRLNFEPAVYDRDKTIMKALRELLIRTNSMDTRL
FT                 ANYGENLRKINSTIFGPKQQSKSSTDSLHQSNFLQQIDEMTLDDTTDDPIN
FT                 RSRSCENTSFFEVLDEVNGSIALLPDKFVVGANKRVQIIANPSSGSGSSEN
FT                 SPRITVSTPAATNKQTFAQNDRSSRRHTDRITNPSVLPGDRMSVTNSDRSQ
FT                 NGVSRTRPEAPSLKVANITSDSHELESFYVTPFAPDQNEEEVKRYVREISN
FT                 VHTSLCERGQTGT"
FT   CDS           1582..5520
FT                 /product="CR1_Ele15_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSPEARDDATHILNQVKKFQSNENSTNITNSTDTQRV
FT                 QPFADFASADLSRAYHSAKLPVSPGELYSGICLAEAGKNAAPNLVRVSNLQ
FT                 PLHVSNYRRIDDQPFIEFSSADNSSACHLAALPVSPGKFDSGICPAEARND
FT                 AAPNXSREINLQLIGNLATSINGTEDLYFQPCLQVSEEFTTRFIRSGDHSD
FT                 QHFGEFSSSDDPGAYHFAALPVSPGKFFSGICPAEAGEDTTQNLNRVLNLQ
FT                 STEHPIAYINPYGEHHIHPFAKSADVSTAYHFAALPVSSGELYSGICPAEA
FT                 GKDAAQNMMRYPNFQQHHETATCIDQTDRAVCESSSNDHNIILPTINARNG
FT                 FNDKKCSLLVYYQNVGGINTRVCDYRLACSDSSYDAYAFTETWLNSDTISS
FT                 QIFSDTYSVFRLDRNPQNSLKNSGGGVLLAVKASFKPRQLSVPNSEAIEQL
FT                 WVAISFQTNTLFICVLYIPPDRSHDMNVIDQHVSAFNWITDKMKIKDSLLI
FT                 LGDFNIPGIRWKFSTSNYLYPDVTSSSIRSSDATLIDSLNMARVSQLNYVV
FT                 NHNNRILDLCFGSIDGDVRFSLIEAPSCLVKPTTHHPSLLIEVIGATPCVF
FT                 VEPVESLYNDFKHGDYSGMNTFFSNINWLDVINQDLELSVATFSNIVLYAI
FT                 DQFVPKRIHRPPTNPPWSNYRLKQLKRLKRSTLRKYSKFKTLSCKLEYHAA
FT                 NVRYKRLNEKLYLSHQRKIQQKLRHNPKAFWNHVNEQRKESGLPTAMFKDS
FT                 VEESSTEGICNLFLSQFSSVFTSEYLDEQQVFLAANNVPVYPPVGDHPFVN
FT                 SEFVCKNCSALKASTSCGPDGIPAIVLKNCSSILSVPLSQLFNLSLQAGSF
FT                 PECWKKSFVFPVFKKGNKRDVKNYRGISALCAVSKLFEKVVHNFLLHNCLH
FT                 FISEHQHGFMPKRSTNTNLVAYTSFIAKELQKGHQVDSIYTDFSAAFDKIN
FT                 HQIIVAKFSRLGFSGSFIDWLKSYLTGRKMAIKIGDCTSPYFLVTSGVPQG
FT                 SHLGPLIFLVYLNDVHSLLKSFKLSFADDFKLYCIVDDVNNACFLQSQLDA
FT                 FTVWCKTNRMELNADKCSVISFSRKRSTFNFDYKIGSTVLRRESVVKDLGV
FT                 LLDSKLSFKEHIAFVASKASKTLGFIFRVAKQFKNIQCLKSLFCSLVRSIL
FT                 EYSSVVWAPYYQNSISRIEAIQRRFVRFALRHLPWNNPTNLPIYEDRCKLI
FT                 GLELLSVRREISKSLFVSDLLQLKIDCPHLLSLLNFNVPHRPLRSSTFIFL
FT                 HGARTNYGYNEPFSAMCRSFNRCSHEFDFHIPRTTLRTKFSQIISESHQNS
FT                 R"
XX
SQ   Sequence 5735 BP; 1577 A; 1291 C; 1146 G; 1718 T; 3 other;
     tctggcaaca ctgttacctt tccgctcttg ctatttttcg gtgctcgatt ttgtatgttt        60
     ttgtcgtgca atttatgtcg aaaattatca gtgactggtg attccggcgt acagtagtag       120
     tctttttaag tgtatagtga ttgttctccc attacaacgc cgtgcaagtg tttatttcgt       180
     gatctgagtt gttattgttt actacaacac actcccactc gctcgatttt ttttttgaaa       240
     gcgacatctg gcggcaatat ttggaagcta ctcggctgta ttggatacaa gtggtagctt       300
     agtttcatac aagttgcaaa tccctgactt ggaatagtct accaaaaggc gtttgcggag       360
     tcgtatcgaa acgtttgcga cgatggaagc ctgtcatgct tgttcaaccc ttatggaatc       420
     gggtagagta ataaattgca atggaacatg tggccggctt taccatttca cttgtgtagg       480
     gatgagtaaa tcccaattta ccgcgtggac ggcaaamatt ggactatatt kgttctgcga       540
     atcctgccgt ctaaatttcg agccggctgt gtacgatcgg gataaaacta ttatgaaggc       600
     tctacgcgag ttgcttattc gcacaaattc catggacacg cgcctagcca actacggaga       660
     aaatctgcgt aaaattaata gtacgatatt tggaccaaag caacaatcta aatcgtcaac       720
     ggactccctt catcagtcaa actttttgca acaaattgat gagatgacat tagacgatac       780
     gactgatgac ccgataaatc gttcgaggtc ttgcgaaaat acttcatttt ttgaggtgct       840
     ggatgaagtg aatggctcta ttgcactcct accagataag tttgtcgtcg gtgcgaataa       900
     acgagtgcaa attatcgcaa acccgtccag tggctcagga agtagtgaaa attcacctcg       960
     tatcactgtt tccactcctg ccgctaccaa caagcaaacg tttgctcaaa atgaccgatc      1020
     ttctcgtcga catacggata gaatcaccaa tccttccgta cttcccggtg ataggatgtc      1080
     ggtgacgaat tctgatagat cgcagaatgg agtgtctagg actcgacctg aagctccatc      1140
     gttgaaagtc gccaacatca catccgattc ccacgaactg gagtccttct acgtcactcc      1200
     tttcgcacct gatcaaaacg aggaagaagt aaaacgttat gtcagagaaa tttccaatgt      1260
     ccacacatct ttatgtgaac gtggtcaaac tggtacctag gggtaggaac gccgaagatc      1320
     tttctttcgt gtcgttcaaa gtgactgtca gtaagactgt ctcgaatgtg gtcggtgatc      1380
     cctggtattg gccggaagga attactgtac gtacttttga gcccaatcca aaaaacggtt      1440
     ctgcaacacg tcttccagta attcaataaa tagagaaact acgaatcttc cacaactcac      1500
     gttatccagg aattcctccg accatcgatc ataccacgca gacaagctcc ctgttttatc      1560
     gagtaagttt tacagtggta tatgtccccc gaagcaaggg acgatgctac acacatcctg      1620
     aatcaagtta aaaaatttca gtccaatgaa aattccacaa acatcacaaa ctccactgac      1680
     acccaacgcg tccaaccatt cgcggatttt gcctcggctg atctttcaag agcgtaccac      1740
     tctgccaaac ttcctgtttc gccaggtgag ttatacagtg gtatatgtct cgccgaagcg      1800
     ggcaagaatg ctgcaccaaa tttagttcgc gtttcaaatt tgcagccact tcatgtctcc      1860
     aactaccgcc gtattgatga tcaaccgttt atcgaattct cgtccgctga caactcaagt      1920
     gcgtgccact tagcggcact tcctgtttca ccaggtaagt ttgacagtgg tatatgtccc      1980
     gccgaagcga ggaatgatgc tgcaccaaat ktaagtcgtg aaattaattt gcagctcatt      2040
     gggaatcttg ccacttccat caatggaacc gaggatctct actttcaacc atgtctccaa      2100
     gtttctgaag agtttaccac ccgtttcatc cgatctgggg atcattctga tcaacatttt      2160
     ggcgagtttt cgtcatctga tgaccctgga gcataccact ttgccgcact tcctgtgtca      2220
     ccaggtaagt ttttcagtgg tatatgtccc gccgaagcag gggaagatac tactcaaaac      2280
     ctgaatcgag tattaaactt gcagtctacc gaacatccta tcgcgtatat caacccatat      2340
     ggtgagcacc atatccatcc gtttgccaaa tcggctgatg tctcaacagc gtaccacttt      2400
     gccgcacttc ctgtgtcatc aggtgagtta tacagtggta tatgtcccgc cgaagcaggg      2460
     aaggatgctg cacaaaatat gatgagatat ccaaatttcc agcaacacca cgaaactgca      2520
     acctgcattg atcaaacgga cagggcggtc tgtgaatcat catccaacga tcacaacatc      2580
     atattaccaa ccatcaatgc tcggaacggt tttaacgata agaagtgtag tctgcttgtc      2640
     tattaccaaa acgtcggtgg aatcaacact cgcgtttgtg attatcgcct cgcgtgttcg      2700
     gactctagct acgacgcgta cgctttcact gaaacatggt tgaatagtga tacgatatcc      2760
     agtcagattt tcagcgatac ttacagcgtt tttcgtttgg atcgcaatcc tcaaaatagt      2820
     ttgaaaaact caggtggagg agtattatta gcagtaaaag ccagctttaa acctaggcag      2880
     ttatcagttc cgaattcaga agctatcgaa caattatggg ttgctatcag ctttcaaact      2940
     aacacgttgt tcatttgtgt cctttacatt cctccagacc gctctcacga tatgaatgta      3000
     attgatcaac atgttagcgc gtttaattgg atcactgata agatgaaaat taaggacagt      3060
     ttactgatac ttggggactt caacataccc ggcattcgtt ggaaattcag cacatcgaat      3120
     tatctctatc cggatgttac tagctcttca attagatcat cagatgctac gctcattgat      3180
     agtttaaaca tggcacgggt ttctcagttg aattacgttg taaaccacaa caaccgaata      3240
     ctggatttat gctttgggag cattgatgga gacgtgcgtt tctcattgat cgaggcccct      3300
     tcttgtcttg ttaaaccaac aacgcatcac ccgtccctgc tgatcgaagt aataggtgca      3360
     acgccctgtg ttttcgtaga accagtcgaa tcgctttaca acgattttaa acatggtgat      3420
     tattctggta tgaacacctt tttctccaat attaactggc tggatgttat taatcaggat      3480
     ctcgaattat cagtcgcaac attctccaac atagttcttt atgctataga ccaatttgtt      3540
     cctaagcgta tccatagacc tcctacaaat ccaccttgga gtaattaccg tttgaagcag      3600
     ttgaaaaggt tgaaacggtc taccttacgc aagtattcga agtttaaaac cctgagctgt      3660
     aagctagagt atcatgccgc caatgttcgc tacaaacgac taaatgagaa actgtatctt      3720
     tcgcatcaac ggaaaattca acagaaactg cgtcataatc ccaaggcatt ttggaaccac      3780
     gtcaacgaac agcggaagga atctggtctc ccaacggcca tgttcaaaga cagcgttgag      3840
     gaatcgtcta cagaaggcat ctgcaatctc tttcttagtc agttttcgag cgtctttaca      3900
     tcggagtatc tggacgaaca acaggttttc ttagcagcga acaatgttcc cgtttatcct      3960
     ccagttggtg atcacccatt cgttaattca gaatttgtct gcaagaattg ctctgctttg      4020
     aaggcgtcaa ctagctgtgg tccggatggt attcctgcaa tagttttgaa gaattgctca      4080
     agcattctat ccgtgcccct atcacaactg ttcaacctat ctctacaagc aggatcattc      4140
     ccggaatgtt ggaaaaaatc gttcgtcttt ccggtgttca aaaaaggcaa caaacgtgat      4200
     gtcaaaaatt atcgcggtat atctgctctt tgcgctgtgt ctaagttgtt cgaaaaagtg      4260
     gttcacaact ttttgctgca caattgcctt catttcatat cggaacacca acatggtttc      4320
     atgccgaagc gttcaacgaa taccaactta gtagcgtata catcattcat tgcaaaagag      4380
     cttcaaaaag gtcatcaagt agattccatc tatacggatt tctcagcagc ttttgataaa      4440
     atcaatcatc agataattgt tgccaagttt agtcgtctcg gtttctccgg atcttttatt      4500
     gattggctga aatcctactt gactggtagg aaaatggcca tcaaaattgg agattgcact      4560
     tcgccatact ttcttgttac ctctggagta ccacaaggca gtcatttagg gccattgatt      4620
     tttttagtgt acctcaatga tgtgcattcg ctgcttaagt cgttcaagct ttcatttgcc      4680
     gatgatttta agctgtattg tatcgtcgac gatgtcaaca acgcttgttt ccttcaatcc      4740
     cagcttgacg cgtttacagt ttggtgtaaa acgaaccgca tggagctaaa tgcagacaaa      4800
     tgctcagtaa tatcattttc ccgcaaacgc tctacgttta attttgacta caagattgga      4860
     agtactgtcc ttaggagaga atcggtggtt aaagatctgg gtgtgttatt ggactctaag      4920
     ttgtccttca aagaacacat tgctttcgta gcctccaaag catctaaaac actcggtttc      4980
     atatttcgtg ttgcaaagca gtttaaaaac attcaatgtt taaagtcttt gttttgttcg      5040
     ctagtgaggt caatattaga atactcgtca gtagtctggg cgccctatta tcaaaacagt      5100
     atttctcgca tagaggcaat tcagcgcaga tttgtacgct ttgccttgcg ccatctgcca      5160
     tggaacaacc caactaactt acccatttac gaagaccgtt gtaaactgat tggtttggag      5220
     ttgttaagcg tccgccgtga aatttcaaaa tctttgtttg tatcagatct tctgcaattg      5280
     aaaattgatt gtccacattt gctgtcgctt ctcaatttca acgtacctca tcgtcctctt      5340
     cgttctagta ctttcatatt tctccatggt gctcgtacta attacggata taacgaaccg      5400
     ttttccgcta tgtgtcgttc cttcaatcgt tgctcacatg aattcgattt tcatatcccc      5460
     cgtactacgc tccgaacgaa attctctcag attatttcag agtctcatca aaattctcgt      5520
     tgaactcttt ttaaggctag caaattaaat cgtttttatg ttactattaa gaaaataagt      5580
     gtatagtatt aagttaaatt gtatcatttg gattgtatgt ttttctgttg gtactaaaag      5640
     atgaggaggt tttgcgccca tttgagatag agctgaggtg ctcaactcaa acgggctttt      5700
     ccctgctcca aataaagaat aaagaataaa gaata                                 5735
//
ID   CR1_Ele16   repbase;    DNA;    INV; 4588 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele16.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4588
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4588
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           784..1620
FT                 /product="CR1_Ele16_1p"
FT                 /translation="MVDVCESCAHELTDQIVVKCNAFCSSKFCQRCSRMPD
FT                 EILRAVNSSQNLFWACNACTDLMKKSRFRNAMVSVNDVNHTTIDELKAEIR
FT                 DYVLGEIKTEIRLNFKNFADNMPVTPIGTLRPLVQVSTRSKRNREDDIDQT
FT                 RTRPQKLFRGTGVAASSGMTTTDGGPTIHEEDRFWLYLSGISPEVTDDAVS
FT                 SLVSSALETNDSIVTKLVPRGKDMSTLSFISFKVGLRPSLKEKAMTASSWP
FT                 RGLVFREFVDDTRDNRRGFWKPSITTADAGPTPATIIQ"
FT   CDS           1623..4520
FT                 /product="CR1_Ele16_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFPTSHLSSTPAKSKISVYYQNVGGMRSKIRSFFLTS
FT                 VSLDYDVIVFTETWLYDGIRNSELTEEYTIYRCDRNSASSNFTRGGGVLIA
FT                 VRKTLPCSSVHLHDSEHLEQVAVSIELPRQYVYVCAIYIRPNSDPTIYSTH
FT                 SSSICQILDMANTDDSVVVVGDYNLPRLTWHFDDEVDCYLPINASSEQEIT
FT                 LTENILASGLKQICDVTNENGRLLDLAFVNTVAYVECIEPPSAILRVDRHH
FT                 TPFVLRIDVQHNDEPEPPPSPSDDIFDFNRCDYDALIDALSQYDWNVMLLG
FT                 LTTDEAVSRFYDTIHDLLRRFAPLARRHTTRTNRKPWWNSELQHLKNVLRK
FT                 ARKRFFRNKTVQNGLSVRRLEDELKSKMDLQYRMYLGNLQDDLKVNPSNFW
FT                 RFIKSKRCANTIPSNITYHGQSSHSTVEATELFAEFFKTVYSSPISTISDD
FT                 YLQSLPSYNIHLPPISVTSNDALASLKRLDPKKGPGPDGLPSVFLTRCAVQ
FT                 LATPVSLIFNKSIAEGTFPRAWKSAAVTPIHKTGSIHSAENYRGISILCHL
FT                 SKVLESIIYDKLYAAAQPILSEFQHGFVKKRSTVTNLLSYISTLNSSLEKR
FT                 LQIDSIYIDFSKAFDKVPHELALKKLDRLGFPVWIVQWLRSYLSERTSFVK
FT                 IGCHKSESFRTTSGVPQGSHLGPLIFIIFVNDLCTYLESCKLMYADDLKLY
FT                 RIVTSVLDCVALQSDVQRLEEWCSLNGMEVNASKCKIIRFNRTRSDIVFDY
FT                 KLMDKTLEKVTSIRDLGLIVDNKLRFSEHISATIAKAFVVLGFVRRNAADF
FT                 EDVYTLKALYCSLVRSILEYAVQVWSPYHAIQANRIERVQKKFLRFALRRL
FT                 PWNDPLRLPPYEQRCQLISLETLASRRTLSERMFVFDVLSGNLDCPELLQR
FT                 INFSVPSRSLRRHSALWLPRHRTNFGENNPIDRCCRKFNEIAHLHEFGXSK
FT                 NVFKCRIRNVL"
XX
SQ   Sequence 4588 BP; 1264 A; 1118 C; 943 G; 1262 T; 1 other;
     ctgtcaaact gtcaagtcaa gctgttattg tttgttttgt gctccgcttt ttttgagttg        60
     tttatgctgt tttaatcgcc caaataatat acagtctgca ttataccgct cattgcatcc       120
     acccacgcca caatcagcca cagttttatc cgtcaagcaa aggtaggacc caaaaactcg       180
     cctccaaaag taggctcgag agtgcttagc tgtgtacacc cagcaattgt tctacctcgc       240
     ctcgctgcct cgccaaaatc caccacccac cgccaccgcc caccgctacc gccgccactc       300
     aagcctcatc aacccatcca ccaataattg caacctgcca cttctgtcac caaaataatt       360
     gcaagtccgt atctgctcca gttacttgca cttaataatt gcgtcgttct gccaaagagc       420
     tgtatcttcg aaacaccgtt cgcaataaac atcgcccttt gctgctgtgt tatcaatcca       480
     ccgttaatcc gaaagaccca caacaacatt agtctgcatt gtttcgcaca ttcatcgagt       540
     aaacaaacaa cgtacctgct ttctcgtcaa cccattcgcc tcgctcatca tcctccagct       600
     acaagtaagt ttgtctaata gtgtgagagt cgatacaacg tcaacgtttc tatcagtgaa       660
     tcgtacgcac acgacccgta cttcgaaagg ggttcgtcga ttgccaattt cgatcagcgc       720
     catctgtttg tcagtctgca tagaaaacca cggattacgt atcagaggtg tgcagctttc       780
     attatggttg atgtgtgcga aagttgtgct catgagctga ctgatcaaat cgttgtaaaa       840
     tgtaacgcat tttgttcgtc gaagttctgc cagcgatgct cgagaatgcc tgatgagata       900
     ctacgcgctg tgaatagctc tcaaaatctg ttctgggcct gcaatgcatg tacggactta       960
     atgaaaaaga gcaggtttcg caacgccatg gtatctgtga atgatgtcaa ccacacaacg      1020
     attgatgaat taaaagcaga aattcgtgat tatgtgctgg gagaaatcaa aacggaaata      1080
     aggcttaatt tcaaaaattt tgctgacaat atgccggtaa ctcctatcgg aacacttcgt      1140
     ccgttggtgc aagtatcgac aagaagcaag cgcaaccgag aagatgacat cgatcagaca      1200
     agaacacgtc cgcagaaact tttccgaggg accggtgttg cagcttcatc aggaatgact      1260
     actactgacg gtggtccaac catccacgaa gaagaccggt tttggctgta tttgtcagga      1320
     atttctcctg aggtgactga tgatgcagta tccagcctcg tttccagcgc tcttgaaact      1380
     aacgattcca tcgttacgaa gctcgtcccg agaggaaaag acatgagcac gttaagtttc      1440
     atatctttca aggtaggtct ccgccccagc ttgaaagaaa aagctatgac ggcgtcgtct      1500
     tggcctaggg gcctcgtttt tcgtgagttc gtcgacgaca cacgtgacaa tcgtcggggt      1560
     ttttggaaac cgtcgatcac aacagcagac gcaggtccaa ctccagcgac gatcattcag      1620
     taatgtttcc gacttcgcat ctttcctcta cacccgccaa atcgaaaata tccgtgtact      1680
     accagaacgt tggcggtatg cgtagcaaaa ttcgttcatt ttttctaacc tctgtttcac      1740
     ttgactatga tgtcatcgtt tttaccgaaa catggctgta tgacgggata cgtaactcag      1800
     agctgactga ggaatatacg atttatcgct gtgatcgcaa ttcagcatct agcaacttta      1860
     ctcgtggcgg aggggttttg atcgctgtaa gaaaaacttt gccatgctca tccgtacacc      1920
     tccatgatag cgagcatcta gaacaagtag ccgtatccat cgaactacca cgtcagtatg      1980
     tttacgtttg cgctatttac attcgcccga acagtgatcc aaccatatat tctacgcact      2040
     cttcatctat ttgccaaatt cttgacatgg ctaacaccga tgattccgtg gttgtcgttg      2100
     gtgattacaa cctaccccgc ttaacatggc actttgatga cgaagttgat tgctacttgc      2160
     ctattaacgc ttcttctgaa caagaaatca cgctcaccga aaatatactt gcatctggac      2220
     ttaaacagat ttgcgacgtt acaaatgaaa acggaagatt actggacttg gcatttgtga      2280
     atactgttgc ctatgtagaa tgcattgaac ctccatctgc tattctacgc gtggacaggc      2340
     atcatacgcc atttgttttg agaattgacg ttcagcacaa tgatgagcct gaacccccac      2400
     cctcaccgtc cgacgatatt ttcgatttta accgctgtga ttacgatgca ttaattgatg      2460
     ctctttctca gtatgattgg aatgtcatgc tacttggctt gaccacggat gaagccgtat      2520
     cgcgttttta cgatacgatc cacgaccttc ttcgacgatt tgctccgctc gctcgtcgtc      2580
     acacaacccg cacaaaccgg aaaccctggt ggaactcgga acttcaacat ctgaaaaacg      2640
     ttcttcgcaa ggcacggaaa cgcttttttc gaaacaaaac tgttcaaaat ggactatcag      2700
     ttagacgtct ggaggatgaa ctcaagagta aaatggactt gcagtaccga atgtatttag      2760
     gaaatttgca ggatgaccta aaggtgaacc catccaactt ttggagattc atcaaaagta      2820
     aacgttgcgc caataccatt ccttccaaca tcacatacca tggacaaagt tcgcactcga      2880
     cagttgaagc caccgaatta ttcgctgaat ttttcaaaac tgtatacagt tctcctatca      2940
     gtaccatatc cgatgactac cttcagagtt taccgtcata caatattcat cttcctccga      3000
     tatccgtgac tagtaacgac gcactcgcct cattgaaaag attggacccc aagaaaggcc      3060
     ctggccctga cggtttgccg tcagtttttc taacacgttg cgctgttcaa ttagcaacac      3120
     ctgtttcgct cattttcaac aagtccatcg cggagggaac tttccctagg gcatggaaat      3180
     ctgccgccgt tacaccgatc cacaagacag gaagcatcca ttctgcggaa aattacagag      3240
     ggatttccat tctgtgtcat ttatcgaaag ttctggaatc gattatctac gataaactgt      3300
     atgcagctgc tcaaccaata ctctcagaat tccagcacgg tttcgtgaaa aaacgttcga      3360
     cggtgacgaa tctgctttca tatataagca cgctgaatag tagcttggaa aagcggttac      3420
     aaatcgactc gatctatatc gatttctcga aagccttcga caaggttccg catgaattag      3480
     cattgaagaa acttgatcgt ctaggatttc cggtatggat tgtacaatgg cttcgctctt      3540
     atctatcgga aagaacatcg ttcgtgaaaa taggatgcca caagtcagaa tcgtttcgca      3600
     cgacatcggg cgtgcctcaa ggtagtcacc tagggccact gattttcata atttttgtca      3660
     atgacctgtg cacttatcta gagtcgtgca aacttatgta tgctgacgac ctaaaactgt      3720
     acagaatagt aacctctgtg ttagattgcg tcgctctcca atcagatgta cagcggttag      3780
     aagaatggtg cagcttgaac ggcatggaag tgaatgccag caaatgtaaa ataattcgat      3840
     tcaacagaac ccgatccgat atagtctttg actacaagct gatggacaag actctagaga      3900
     aggtcacatc aatacgggac ctaggtctga ttgtggacaa caaactacgc ttttctgaac      3960
     acatttcagc aacaatcgcc aaagctttcg tcgtactcgg atttgtgcgg cgtaacgctg      4020
     ctgacttcga agatgtttat acgctgaaag ctctatattg ttcgttagta cgcagcattt      4080
     tggagtacgc ggtccaagtc tggtctccct atcatgccat ccaagcaaac aggattgaac      4140
     gagtccagaa gaagttcttg cgatttgcac tcaggaggct gccgtggaat gacccgttgc      4200
     gtctaccacc gtatgagcaa agatgccaac ttatctccct ggagacgctt gcttcgagaa      4260
     ggacactttc tgagcgaatg ttcgtattcg acgtgctgtc tggcaatttg gattgcccag      4320
     aacttctcca aaggattaat ttctccgttc cgtcacgttc gctccgtcga cattctgcac      4380
     tgtggctgcc caggcatcgc acaaatttcg gcgagaataa tccgatagat cgctgttgtc      4440
     gcaaattcaa tgaaatagct catctacatg aatttggcmt atccaaaaat gtttttaaat      4500
     gtcgcatccg taatgtttta tagttttaag catcagtctg tagagttttt tttaactgaa      4560
     gacgtagtac aataaataaa taaataaa                                         4588
//
ID   CR1_Ele17   repbase;    DNA;    INV; 4657 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele17.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4657
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4657
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 26
CC   sequences with >96% identity, and ~98% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           771..1622
FT                 /product="CR1_Ele17_1p"
FT                 /translation="MSDICEKCANHITGDSINCGGFCSSMVCMRCSGIADD
FT                 AYASIKANMHLVWMCTACKNLLSKARFSNSLVSINKANESVIESMKVEIRN
FT                 SVLAEIKYEIRSNFKTLIDSVPRTPASIYRTPHPPSIRSKRLRDNDCDDDA
FT                 ATHRPAKSMCCVGTSATVADLVVSEAAEENRAKFWLYLSGILPEVPESKVV
FT                 ELAESRLKTTNLQVVKLVPRGKDARTLTFVSYKIGIPLELKTIALAPETWP
FT                 RGIRFREFESVGNKKQFFWRPEAVTPNPIIQTETPIASSILPR"
FT   CDS           1535..4588
FT                 /product="CR1_Ele17_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ETVFLEAGSCDTQPNHPDRDTDSIVHPSSLVSEELTT
FT                 TATSVHHAISHIIPPSFPVPPSPTVTPFPRAPIVPLTIYYQNVGGMRTKTN
FT                 DFHLLTASCDYDVIVLTETWLRSDVRNTELSSDYNIYRCDRSSMTSRFQRG
FT                 GGTLIAVKKSVASMAVQLDRSDSLEQVAVKVSSSNKSVYVCGIYLRPNSDP
FT                 GKYAAHSDCVEQIINKTSFGDSVVIVGDYNLPHLLWSYDDDVNSYIPTNAS
FT                 TEQELSFAENMIATGLQQICNVRNSNGRLLDLAFVNSSEVELLEAPSAILP
FT                 TDRHHKPFVLRLATRSASENLDVAVGQDFDFRRCNYEAVIDDLHLLNWDEI
FT                 FNGANINEAVDTFYTLVFGIISRHTPLRRTNPQRSNYQPWWNSDLRHQRNV
FT                 LRKARRRFLRHRTEXNKSFLRSLESEYNECVSSSFREYIFRIQDEVKADPS
FT                 SFWRFFKSRKDAQAIPSEMSYGDSLSYDIEGSVELFADYFKSVYNVETPPD
FT                 PHEMLNSLPSFDIHLPFPTFAVAEVVSALNSVDPSKGPGPDKLPPVFIQRC
FT                 AEVLGPPVCRLFNLSLSEAVFPDAWKVAAITPIHKAENIHDVKNYRPISIL
FT                 CCLAKTLELLVHSRMYAAAMPVISQYQHGFVKNRSTATNLMVFASAVNSSL
FT                 EKRCQVDGVYVDFSKAFDKVPHELAMRKLERLGFPDWLVKWLRSYLRDRTA
FT                 FVNLRSTKSTSFATPSGVPQGSHLGPLIFILFINDLSHRLNSKHLMYADDL
FT                 KLYRIISSMVDCAALQQDIDAVARWCVMNGMEMNALKCKVISFTKSRSQLS
FT                 FNYTANGVSFERVTSIKDLGVIMDRKLNFAEHISKTTTKAFAMLGFIRRNA
FT                 SDFQDVYALKTVYCAIVRSLLEYAVQIWAPYQETHITRIEKVQRCFMRFAL
FT                 RRLPWNDPLRLPPYENRCELIKLEPLRTRRVFLQRMFAFDVLTNRIDCPDL
FT                 LQQANFFVPARRSRPRSLFWTARHRTVFGQNHPMERCFNLLNVDVFDFDVS
FT                 RNKFKARIRLLH"
XX
SQ   Sequence 4657 BP; 1231 A; 1129 C; 1014 G; 1282 T; 1 other;
     tctggcatca ctgctattgt ggtttgtgtt gtttctgtgt cgctctggat attattcaat        60
     ttatcgccaa catctacgtc gaaaaatcat cgttcaccgc aaatccgact cataaaccga       120
     aatcattcac ccgcaatcga ttctacgcca aagttggaca ggtaggatag tgattttaat       180
     aatccgagct ggcttgagag tggaagttta gcctgcatcg ccattgcctc ctccagcaat       240
     tacccacctc gccgctctcc acctgtacct tttggtcgta ctgcccaact gctgccccca       300
     agtccaacca aaaatctcac actcgccatc tcacatctca tcgtcaccgc atcaatccga       360
     atcaaaacaa acaactataa gacctgctag caattatttc tggagaatat acgtccgttt       420
     ctcgtcccgt tttatcattc cgacaaatcc gaacgtctcg acgaccagga attctgcatc       480
     gccgcatctg ggaatttttt cgaatgcgtt tttccgttca tccgtttcga atctgtaagt       540
     tgtgagcctg tccacatcat taagtgcatc tcgtcaacga acattgccga taacgtcatc       600
     gccatcggtt tcaacgaaca ccaatagagg cgtacgcgag aggtgagata gcttttcact       660
     gttcacgtat atctgtcatc gttagtgaac ggacatctcg tcgattgctt tgagataggc       720
     catctatccg ccactagtat catttctaca gtgttgctag tttgttcgca atgtcggata       780
     tttgtgaaaa atgcgccaat cacataaccg gcgattcgat aaattgtggt ggtttttgct       840
     cgtcgatggt ttgtatgcgg tgctccggga ttgctgatga tgcatacgcc tcgatcaaag       900
     caaatatgca tctagtatgg atgtgtacgg cgtgcaaaaa tcttctatcg aaagcgcgat       960
     tttcgaactc tttggtgtca atcaacaagg caaatgaatc cgtgattgaa tcaatgaaag      1020
     tggaaattcg aaatagcgtg ctggcagaga tcaagtatga aattcgttca aatttcaaaa      1080
     ctttgatcga ttccgtaccc cgtaccccag cttcaattta ccgcacacca catccacctt      1140
     cgattagatc caagcgtctg cgtgataacg attgtgacga cgatgcggct acccatcggc      1200
     cggcaaaatc catgtgttgc gttggaacta gtgctacagt cgcggatctg gttgtttctg      1260
     aagccgcaga agaaaatcgc gcaaaattct ggctgtactt gtctggcata ttgccggagg      1320
     taccagagag caaggtcgtc gaactagcgg agtccagatt gaagacaacg aatctgcagg      1380
     tggttaaact cgttcctcga gggaaagacg ccagaacgct cacttttgtt tcgtacaaaa      1440
     ttggaatacc acttgaactc aaaaccatcg ctctggcacc ggaaacttgg ccacgtggaa      1500
     tacgcttccg agaatttgaa agtgttggga ataagaaaca gtttttttgg aggccggaag      1560
     ctgtgacacc caacccaatc atccagaccg agacaccgat agcatcgtcc atccttcctc      1620
     gttagtttcc gaagagttaa cgacaactgc tacgtccgtg catcacgcta tatctcacat      1680
     cattccgcca tcgttccccg ttccgccatc gcccaccgtt acgccgttcc cgagagcacc      1740
     tatcgttcca cttactattt actaccaaaa cgtcggcgga atgcgtacga aaactaacga      1800
     ttttcactta ctgaccgctt cttgtgacta tgacgttatc gtgctgacgg aaacgtggct      1860
     tcgcagcgat gtgaggaaca ctgaactgtc gtccgactat aacatctatc gatgcgaccg      1920
     aagcagtatg actagtcgtt tccaaagagg agggggaaca ctcatcgctg tcaagaagtc      1980
     tgttgctagc atggctgttc agctggacag atctgactcg ttggaacagg ttgctgtaaa      2040
     agtatcctcg tcgaacaaat ccgtctatgt ttgtggaatc tatttgagac ccaacagcga      2100
     tcccggtaaa tatgccgcac attccgactg tgttgagcaa attatcaaca aaacaagttt      2160
     cggcgattct gtagtgattg ttggtgacta caatctgcca catttactat ggtcatacga      2220
     tgacgacgtg aactcctaca ttccgacgaa tgcctcgact gagcaggagc tttcttttgc      2280
     tgaaaacatg atcgctactg gactacagca gatttgtaac gtgcgtaatt ccaacggcag      2340
     attgctcgac ttggcttttg taaacagtag tgaggtggaa ctacttgaag cgccatcagc      2400
     tattttacca actgaccgtc atcataaacc gtttgtgcta cgcctagcca cgcgcagtgc      2460
     cagcgagaat ctagacgttg cagtaggcca agattttgat tttcgacgat gtaactatga      2520
     agccgttatt gatgatctac atctgttgaa ctgggatgaa atcttcaacg gagcaaatat      2580
     caacgaagcg gtcgatactt tctacacatt ggtattcgga atcattagca ggcacactcc      2640
     gctccgcaga actaatcctc agcggtcgaa ctatcagcca tggtggaatt cggatcttcg      2700
     acaccaaaga aacgttcttc gcaaagctcg ccgtcgcttc ttacgccatc gcactgaaga      2760
     maacaagagt tttctccgta gtcttgaatc tgagtacaac gaatgtgtgt cttcttcgtt      2820
     ccgtgagtat atttttcgta ttcaagatga ggtcaaggcc gatccttcct ctttttggcg      2880
     atttttcaaa agcaggaaag atgcgcaggc aatcccatcc gaaatgtcgt acggcgactc      2940
     attaagttac gacatcgaag ggtctgtcga acttttcgcc gactatttca aatccgttta      3000
     taacgttgaa actccaccgg atccgcatga gatgctgaat tccctgccgt ctttcgacat      3060
     acatttaccg tttccaacgt ttgccgtggc agaagtcgta agtgctctca actctgtcga      3120
     tccttccaag ggtcctggac ctgataaact ccctccggtc ttcattcaac gttgcgctga      3180
     agtacttgga ccacctgttt gtcggttgtt caacctgtcg ttgtcggaag ctgtttttcc      3240
     ggatgcttgg aaagttgctg ccataacgcc cattcacaaa gccgaaaata tccatgacgt      3300
     gaaaaactat agacccatct cgattctctg ttgcttagct aagacactgg aactcttagt      3360
     tcacagtaga atgtacgctg cggctatgcc agtaatatcg caatatcagc acggcttcgt      3420
     gaagaatcgg tcaacagcta ctaacctcat ggttttcgct agtgctgtga actctagctt      3480
     ggaaaaacgc tgccaagtgg atggcgttta cgtagatttt tccaaagctt tcgataaggt      3540
     gccccatgag ttagcaatgc gtaaacttga gcggctagga tttcccgact ggttggtcaa      3600
     gtggctacga tcatatctac gagacagaac cgcctttgtt aatctacgat ccaccaaatc      3660
     aactagtttc gctactccgt ctggcgtgcc gcaaggtagc cacctcggtc ctttgatttt      3720
     cattttgttc atcaacgact tgagtcatcg actgaactcg aagcacctta tgtacgcaga      3780
     cgatttgaaa ttataccgta tcatcagttc catggtcgac tgtgctgctc ttcagcaaga      3840
     catcgacgct gtagcacgct ggtgcgtaat gaacgggatg gaaatgaatg cgttgaagtg      3900
     caaagtgata agcttcacta aatcacggtc gcagttgagc ttcaactaca ctgcaaatgg      3960
     tgtcagcttt gaacgtgtaa cgtcgataaa agacctggga gtgataatgg accgtaagct      4020
     gaatttcgct gaacacatct caaagacaac aacgaaagct ttcgctatgc tgggtttcat      4080
     tcgtcgtaat gcatccgact ttcaagatgt gtacgccctg aagaccgttt actgcgcaat      4140
     cgttcgcagc cttctcgaat atgctgttca aatctgggca ccatatcaag aaacgcatat      4200
     tactcgcata gaaaaggtgc aacgttgttt catgcgtttt gcgttacgga gactaccatg      4260
     gaacgatccg ctcagactgc ctccttacga gaaccgctgt gaacttatca agctcgagcc      4320
     tttgcgaaca cgtcgtgtat ttctccaaag aatgtttgct ttcgatgtct tgacgaatcg      4380
     gattgattgc cctgatcttc tgcaacaagc gaactttttt gttccggctc ggagatcccg      4440
     cccacgttcg ttgttctgga ccgcaagaca tcgtacggta tttggacaaa atcacccgat      4500
     ggaaagatgt tttaacttgt taaatgttga tgtttttgac tttgatgtga gtagaaataa      4560
     gttcaaagct agaataagat tattgcatta gattaagacc aatacagtct gtacagcaat      4620
     gctgaagacg aagtaaataa ataaataaat aaataaa                               4657
//
ID   CR1_Ele18   repbase;    DNA;    INV; 4697 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele18.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4697
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4697
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 22
CC   sequences with >91% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           763..1620
FT                 /product="CR1_Ele18_1p"
FT                 /translation="MAQICEKCANEISGETVTCGGFCSSIVCLKCSAISDA
FT                 MYASIKANMHLVWMCTCCRNLLSKARFSNSLVSVNKASESVIESMKAEIRD
FT                 SILADIKHEIRSNFKTLINSVPRTPASHYRTPLVASSKSKRPRENDDDXDN
FT                 PASRPAKSMCCIGTNAADTNLVVPEAPTEDSNMFWLYLSGILPEVPDSKVT
FT                 ELAESKLKSTNLRVVKLVAPGRDIKSLTFVSYKIGMPADLKPTALSTETWP
FT                 RGIRFREFENKGSKKQFFWRPTEPTPNQSDLTETPRASGQSHFQR"
FT   CDS           1527..4628
FT                 /product="CR1_Ele18_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="EAVFLEADRTNAQSIRFNRNTESIRSESLPAINSAVV
FT                 SRIEGGSPTVDHNVINHSPNATITVSHSTPTTAPSPIADRYTPRSSNTPLT
FT                 VYYQNVGGMRSKTNDFFLATASCEYDVIVLTETWLRSDVSNSELSSDYNIF
FT                 RCDRSSASCHFSRGGGVLIAVKKAISSLPVRLERCNSLEQIVVKLRLQSKS
FT                 VYVCGIYLRPNSDPDKYAAHADSVQQIMQKTSDGDSVLIIGDYNLPHLHWA
FT                 YDDDLDSHLPTNASSEQELVFTENMIASGLLQICDVRNSNDRLLDLAFVSN
FT                 SSEVELFEVPFSILPPDRHHKPFVLRLFTSELEASHAVSAQHDFNFNRCNY
FT                 NAVIEELSLFRWEELFQETDVNAAVANFYNVVFGVIRRHTPLRRSSPRRPN
FT                 SLPWWNADLRRRRNVLRKVRRRFLQHRSEENRSLLRRLEAEYNECVSSSFR
FT                 EYIFRIEDEVKADPSVFWRFFKERKGAQSLPSEMSFGGITSHSPTESVELF
FT                 ADFFKSVYNPSSPLISADALDLLPSFDIHFPCPTFSIADVTEALNAIDSSK
FT                 GPGSDKLPPVFIKRCAEVLAIPVCRLFNLSLTEAIFPDAWKLSAITPIHKA
FT                 GNLHKIENYRPISILCCLAKTFERLIHDRMYSAAKPLISQYQHGFMKNRST
FT                 TTNLMAYVSSLNFSMEKRFQVDSIYVDFSKAFDKVPHDLTLRKLDRLGFPD
FT                 WFINWLRSYLRDRTAYVNLKSVESTRFPTPSGVPQGSHLGPLIFIIFVNDL
FT                 IDRINSHRLMYADDLKIYRIISSSIDCAALQQDIDTVSSWCVLNGMEMNAI
FT                 KCKVISFTKSRAQMRFDYSANGTLLDRVKSIKDLGVVMDEKLNFNEHVAAT
FT                 TAKAFAVLGFIRRNASEFRDPYALKSAYCSLVRSILEYAVQVWAPYHETQI
FT                 ARIERVQRCFVRYALRRLPWSNPIVLPAYDSRRQLIGLESLRHRRVYLQRM
FT                 FAYDVISSRIDCPELLQQANFFVPARLLRQRSLIRISRHRTVFGQNHPLEK
FT                 CFNLLNDVDIFDFTIDRNRFKNIVRQIY"
XX
SQ   Sequence 4697 BP; 1235 A; 1144 C; 1005 G; 1312 T; 1 other;
     agattttctg gcaccactgt tcttgcaact tgtgttgttt ttgtgtcgct ccatcaattt        60
     ttcgattact gccgtcgtac atctcaacaa atcatcgccg atcatctttc tggctcctga       120
     ctcatcaatt actcgcccgc attgaaacca ccctcaatct tggacaggta ggatagtgat       180
     tttgaaataa taaaatccga gccggctaga gagtggatgt tttgcccgca ccgccattgc       240
     cacccgctgc atttttccca cctcgccgct ctcctcctgc ttccactgta ttcatccaac       300
     acaagtaagc ctcattcaag cactcgcagc caagcaccgt gtattaacac caccacactg       360
     gcgctatctc cgatactgca cggaatttaa taactcggac tgtactacgc ttatcaagac       420
     tgctggataa tatatccccg tttgctgtcc cgtcttatta ctttgacaca tccgaatgcc       480
     cttcgcataa ccgcattggc ctgttccgca tccattcgta cccaggatcc acccaacgta       540
     agtcgagtca tttcgccgta gtgttagttg ttgacataca tacgtccact taaatcgctc       600
     acgcaacgga atcagctgat acgagcaagt gagacgtgag ttacattcat catctcactg       660
     cgtttcttct ggatcatcat ctagccatct catcgatcgt attggatcgg ccatctacct       720
     gacactagcg ggaacttatc cagtgttgct tgttccactg aaatggctca aatctgcgaa       780
     aaatgtgcga acgaaatcag cggtgaaact gtgacatgtg gcggtttctg ttcttcgatc       840
     gtatgcctaa aatgctccgc aatttctgac gcaatgtatg cttctattaa ggcaaacatg       900
     catctggtat ggatgtgcac gtgttgcaga aatttgcttt ccaaagcgcg tttttccaac       960
     tctctggttt cggttaacaa ggctagtgaa tctgtgatcg agtccatgaa ggctgagatt      1020
     cgtgacagta ttctggcgga tatcaaacat gaaatccgtt ccaatttcaa gactctcatc      1080
     aattccgttc cacgtacgcc agcatctcat tatcgaacac cgctcgttgc atcatcaaaa      1140
     tcgaaacgac cacgtgagaa cgatgatgac gwcgacaatc ccgctagtcg accagcaaag      1200
     agcatgtgtt gtattggcac taatgctgcg gatacaaacc tggttgttcc agaggctcca      1260
     acagaagatt ccaacatgtt ctggttgtat ctatctggaa ttcttccaga agttccagat      1320
     agcaaggtga ccgaattagc agagtcgaag ctgaaatcaa ccaatttgcg ggtggttaaa      1380
     cttgtcgcgc ctggtagaga catcaaatcg ctgactttcg tgtcgtataa aatcggaatg      1440
     ccggcggatc ttaaacctac tgcgctttcg acagaaacat ggccccgtgg aattcgcttc      1500
     cgcgagtttg aaaacaaggg tagtaagaag cagttttttt ggaggccgac agaaccaacg      1560
     cccaatcaat cagatttaac cgaaacaccg agagcatccg gtcagagtca cttccagcga      1620
     taaactctgc agtggtttcc cgtatcgaag gtggttctcc cacagttgat cacaacgtta      1680
     tcaatcattc accaaacgcc accatcactg tatctcattc aactcctacc actgcgccgt      1740
     ctccgatagc cgatcggtat actcctcgtt cgtcaaatac gccgttgact gtctactacc      1800
     agaatgtcgg tggaatgcga agcaaaacca acgacttttt cttggctact gcctcctgtg      1860
     aatatgatgt tatcgttctg actgaaacgt ggcttcggag cgatgtgagc aactccgaac      1920
     tatcctccga ttataacatt ttccgttgcg accgtagcag tgcatcttgt cacttcagca      1980
     gaggtggggg agtgctaatc gctgttaaga aggctatctc aagtctccct gttcgactcg      2040
     aaagatgtaa ctcactcgag caaattgtgg taaaactccg cctccagtca aagtctgttt      2100
     atgtctgtgg gatatacctc aggccgaaca gcgatcccga caagtatgcc gctcatgctg      2160
     acagtgtgca acaaataatg caaaagactt ccgacggtga ttctgtgctg ataatcggtg      2220
     actacaacct gcctcatctg cactgggcat atgacgacga tttggattca cacctaccga      2280
     cgaacgcgtc ttcggagcaa gaactagtgt tcacagagaa catgattgcc agtggtttat      2340
     tgcagatttg tgacgtacgt aactcaaacg atagactact tgacttggcc ttcgtcagca      2400
     acagtagcga agttgaattg ttcgaagtgc cattctcgat tttacctcct gaccgccacc      2460
     acaaaccgtt cgttttacgt ttattcacaa gtgaattgga ggcttcgcat gcagtgtcgg      2520
     cccagcacga tttcaacttt aaccgttgca attacaatgc tgtaatcgag gagctgagct      2580
     tgtttagatg ggaagaacta ttccaggaga ccgatgttaa cgcagcggtt gccaatttct      2640
     acaacgtggt tttcggggta atacgcagac acactcctct tcgccgatct tctcctcgcc      2700
     gcccgaatag tttaccgtgg tggaacgctg atcttcgtcg ccggcgaaat gtcctccgca      2760
     aagtgcgtcg ccgtttcctg caacaccgtt ccgaagaaaa cagatccctg ctacgtagac      2820
     tcgaggctga atacaacgag tgcgtctctt catccttccg tgagtacatt ttccgcatcg      2880
     aagatgaggt taaggcggat ccttccgtgt tttggcgttt cttcaaagaa aggaaagggg      2940
     cacaatcact cccatcggaa atgtcttttg gtggcataac aagtcacagc cctacggaat      3000
     cagtcgaact ttttgctgat ttttttaaat cagtgtacaa tccctcgtct cctttgatat      3060
     ctgcggatgc gttggatttg ttaccatctt tcgatattca ttttccgtgt ccgacgtttt      3120
     caatagcaga tgtcaccgaa gccctgaacg ccatcgactc atcgaaaggc ccaggatcag      3180
     ataaacttcc tcctgttttt atcaaacgtt gtgctgaggt actcgcaata cctgtttgtc      3240
     ggttattcaa cttatccttg actgaagcaa ttttcccaga cgcatggaag ttatctgcaa      3300
     ttacaccgat acataaagct ggaaaccttc acaagattga gaactatcga ccgatttcga      3360
     tcctctgctg cttagcgaag actttcgaac gcttgattca cgacagaatg tattcggctg      3420
     ccaagcccct aatttcacag tatcagcatg gcttcatgaa gaatcgctct actactacca      3480
     acttgatggc gtatgttagt tcgctgaact tcagtatgga aaaacgcttc caagtggata      3540
     gtatttacgt ggacttttct aaagcgttcg acaaggtacc gcacgactta accctaagaa      3600
     agctcgatag actaggtttt cctgattggt tcattaactg gttgagatcg tacctgcgtg      3660
     atagaaccgc ttatgttaat ttaaagtctg ttgagtctac gcgttttcca actccttcgg      3720
     gtgtcccaca aggtagccac ctgggaccct tgatatttat aattttcgtc aatgacttaa      3780
     tcgatcgaat caattcacat cgtctcatgt atgcggatga tttgaaaata tatcgaatta      3840
     taagctcgtc gatcgattgt gccgcgctac agcaagacat cgacaccgta tctagttggt      3900
     gtgtattgaa cggtatggag atgaatgcga taaagtgtaa agtgattagt ttcaccaaat      3960
     cgcgggcgca aatgagattc gactatagcg cgaatggaac gttgttggac cgcgtaaaat      4020
     ctattaaaga tcttggagtt gttatggacg aaaagttgaa tttcaacgag cacgttgctg      4080
     cgaccactgc caaggccttt gctgtactag gattcattcg acgaaacgca tccgaattcc      4140
     gtgatccata tgctttaaaa tccgcttact gctcgctcgt aagaagcatc ctggaatatg      4200
     ctgttcaagt atgggctcct taccacgaaa ctcaaatcgc tcgtatagaa agagtgcaac      4260
     gatgcttcgt ccgatatgcc ctgaggagat taccgtggtc aaacccgatc gtgctgcctg      4320
     cgtatgatag tcggcgccaa ctaatagggc tggagtcact acgccatcga agagtttacc      4380
     ttcaaaggat gttcgcatat gacgtaataa gtagccggat cgactgccca gagcttctgc      4440
     aacaggcgaa tttctttgtc ccagcgcgtc ttttacgtca acgttcttta atcaggataa      4500
     gtcgacaccg tactgttttc ggccaaaatc atccactcga aaaatgtttt aatcttttaa      4560
     atgatgtaga tatttttgat tttactattg atagaaatcg ttttaagaat attgtgagac      4620
     aaatttatta gtaagataag gggtattcag tctgtacagc aaagctgaag acggtgttaa      4680
     ataaataaat aaataaa                                                     4697
//
ID   CR1_Ele19   repbase;    DNA;    INV; 4077 BP.
XX
AC   .
XX
DT   26-OCT-2010 (Rel. 15.10, Created)
DT   26-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele19.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4077
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4077
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (26-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           216..1001
FT                 /product="CR1_Ele19_1p"
FT                 /translation="MAISVCCSCAGELVKAEEIVCNGFCRSSFHLKCVHQS
FT                 VATRDAVINCSQLFWMCCACTKMMANANFRHAISSTNNAVEAISAEHSKAL
FT                 IELRQEMEQNTAKINSILSQIPSALQNRTGRRGSTSSNTNRKRPRIDEEDT
FT                 QPESNVTVGTKEIDPQVTIPLAESKTDDNLFWLYLSGFDPKASEDDIRGLV
FT                 QQNLNTTDTIDVRKLVPKGKKLEELTFVSFKVGVGVQLKDLALLTSTWQKG
FT                 ITFREFDFHPRPTFQFHRTQQ"
FT   CDS           919..4002
FT                 /product="CR1_Ele19_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PLPGRKESLSANSISTLDRLFSSTERSSNETEIIXPL
FT                 SSNPARLCYPPVHINAPTVCTSFAPLTTRDNIVKTVDTHNPLKSSMTVYYQ
FT                 NVRGLRTKTNELFAALSCCDYDIVVLTETWLNGNVLNSELTNEYAIYRCDR
FT                 NPSTSQHLRGGGVLIGVKNTIPSNVLSVSGAERLEQVVVQATVGCVSLVVC
FT                 AIYLPPNTELDLYEQHAACINELHNRLSDGNRVVVLGDYNLPLLRWCFDDD
FT                 IGCFIPMNASSEQELSLVENVVASGLQQVNHLINENGRLLDLAFVNSGNTC
FT                 EIVEPPLPLMNVDRHHQPFVMVIETLLSELDDDCSNLAYDFNQCNYDELNF
FT                 AISQVNWVEILNLDALDDAVDRFYGELNSIFRRYVPLRRQTQLPRNKQPWW
FT                 NGELRNLRNRLRKARKRYFRSRSDDLKALVRDLECKFNSLNASRFRSYISR
FT                 LESKMKDDPKHFWTFLRNRTSNCGAPRIVNYQNETSTTWIESANLFSSFFR
FT                 SVLSNNSPPLSETYLNSLQTFDFNLPATTLTEQDVYSKLRDVDRSKGPGSD
FT                 GLPPSFIKACSISLALPASLLFNRSLAESTFPSRWKDALITPIHKAGNLHD
FT                 VRNYRGISILSCLAKVFESLVLDLVYPAVQNVIMNEQHGFVKKRSTTTNLM
FT                 NYVSTLIENLEKRQQIDAVYIDFSKAFDQVPHQLAVEKLKRIGFPDWLTKW
FT                 ISSYLSGRFASVKLGAVKSDPFQVTSGVPQGSHLGPLLFVLFVNDLCSELK
FT                 SSKTMYADDLKIFRVISSLVDCCALQEDIEHVLRWCERNGMEVNVQKCNII
FT                 TFARIRSPIVFSYAVKDCSLNRVSLVKDLGILLDSKLRFTEHISSVVAKSF
FT                 AVLGIIKRNAREFKDVYCLKTLYISLVRSILEYGVVVWTPFHAVHIERIER
FT                 VQKAFIRFALRRLPWRNRPHLPPYEHRCALINLPTLKTRRTYLQRLFIFDL
FT                 LENNIDCPELLTRLRFNVPARTTRRTEFFRRSTHRTQYGQNSPLYVCCQSF
FT                 NDVNQYYEFRISKLAFKSRIRF"
XX
SQ   Sequence 4077 BP; 1163 A; 918 C; 866 G; 1127 T; 3 other;
     ggtaaaccta tatgttgatt tttcgcaaaa tcgttttcta atttcaacat ttttgtgttt        60
     catatacctg ttttgatact cgtgacgtgc tcatcgtgct gaccaaccac tttcccgtcc       120
     ggaacaactg gagtacaatc gtttcaagcg caataacatc caaaaaatcg tcaatttcat       180
     ccgtactaca acttcactac ccacaatctc aaacaatggc tatttctgtt tgttgttcat       240
     gcgctggtga gctggtgaag gcagaagaaa tcgtttgtaa tggtttctgc cgatcgtcct       300
     ttcatctcaa gtgtgtgcat caatctgtag ccacccgcga tgctgttatc aactgctccc       360
     agctcttctg gatgtgctgt gcatgcacca aaatgatggc aaatgctaat tttcggcatg       420
     caatatcgtc caccaacaac gctgtggagg ccatcagcgc tgagcacagc aaggcgttga       480
     tcgagcttag acaggagatg gagcagaaca cagcgaaaat aaacagtatt ctttcacaaa       540
     ttccttccgc actacaaaac cgaactggac gaagaggaag tacttccagc aacacgaatc       600
     gtaaacgacc acggattgat gaagaagata ctcaaccgga gagcaatgta accgtaggta       660
     cgaaagaaat cgatccacag gtgacgatac cattagcaga aagtaagacg gacgataact       720
     tgttctggtt gtatctgtct ggtttcgatc cgaaagcatc agaggacgat atacgaggct       780
     tggtacaaca aaatctgaac accaccgata ctattgacgt gcgaaaattg gttcctaaag       840
     gcaaaaaact tgaagaactc acattcgtgt cgttcaaagt tggcgttggt gtgcaactaa       900
     aggacttggc gctgttaacc tctacctggc agaaaggaat cactttccgc gaattcgatt       960
     tccaccctcg accgactttt cagttccacc gaacgcagca gtaacgaaac tgaaatcatc      1020
     wcacctctct cgtcgaaccc agcacgcctc tgttacccac ccgtacatat caacgcacca      1080
     actgtgtgca catctttcgc accgctaacc actagggata atattgtgaa aacagtggac      1140
     acacacaacc cactgaaatc ctcgatgaca gtgtattacc aaaacgttag gggactacga      1200
     actaaaacga acgaactgtt tgctgctctt tcttgctgtg attatgacat cgttgttcta      1260
     acagagactt ggctcaacgg caatgtgtta aattcggaac tgacgaatga gtatgcgata      1320
     tatcgatgcg atcgaaatcc ttctactagc caacatctcc gtggtggtgg cgttttgatt      1380
     ggtgtgaaaa acacaatccc gagcaacgtt ctatctgtca gcggagcaga gcgattagaa      1440
     caagtggtcg ttcaggcaac cgttggatgc gtctctttgg tggtatgtgc tatttatctc      1500
     ccaccaaaca cagagctcga tctctatgaa caacatgctg cttgtatcaa tgagcttcac      1560
     aatcggttga gcgacggtaa cagggttgta gttctgggag actacaactt gcctcttctt      1620
     cgctggtgct ttgatgacga catcggatgc tttatcccaa tgaatgcttc atctgaacaa      1680
     gaattatcgc tggtcgaaaa tgttgtcgca tctggtttgc aacaagtaaa ccacctaatt      1740
     aacgaaaacg gtcggttgtt ggatttggca ttcgtgaata gtggaaatac ttgcgaaatt      1800
     gttgaaccgc cattgccttt aatgaacgtt gaccgtcatc atcagccttt cgtgatggtc      1860
     attgaaactc tccttagcga actcgatgac gactgctcga atttagctta tgatttcaat      1920
     caatgcaatt acgacgaatt gaattttgca atttcwcaag taaattgggt ggaaatttta      1980
     aatctggacg ctttggacga cgctgttgat agattctatg gcgaattgaa ttccattttc      2040
     cgacgatacg tacctttgag aagacaaacg cagctgccca ggaacaaaca accttggtgg      2100
     aatggggagc tgagaaattt gcgtaacaga ctacggaaag ctcgcaagmg gtattttcga      2160
     tcgagaagtg atgatttgaa ggctctggtg cgcgacttag aatgcaaatt taattctctg      2220
     aacgcatcac ggtttcggtc atacatttcc cgactcgaaa gtaagatgaa agacgacccg      2280
     aagcatttct ggacattcct gcgaaaccgt acatcgaact gtggagctcc tcggatcgtc      2340
     aactatcaga acgaaacatc gacaacgtgg atcgagtcag caaacctgtt ctcgtcgttc      2400
     tttcgaagcg tgttaagtaa caactcacca cctttgtcgg aaacgtacct gaatagtttg      2460
     cagactttcg attttaactt acctgctact accctcacgg aacaggacgt ctattcaaaa      2520
     ttacgtgatg tggatagatc aaaggggcca ggatcagatg ggctgccacc gtcattcatc      2580
     aaagcgtgct caatctctct cgctcttcct gcatcgttgt tattcaatcg ttcacttgcc      2640
     gaaagtactt ttccatcaag gtggaaagat gcactgatca cgcccattca taaagctggg      2700
     aacttacacg acgttcgaaa ttacagagga atttccattt taagctgcct agcaaaagtt      2760
     ttcgaaagct tagtgttgga tctcgtttac ccagcggtgc aaaacgtcat tatgaatgaa      2820
     caacacggat ttgttaaaaa acgttcaaca actacgaatc tcatgaacta tgtgtcaacg      2880
     ctaatcgaaa atttagagaa acgacaacaa atcgatgcgg tgtatattga tttttcgaag      2940
     gctttcgacc aagttccaca tcagcttgct gttgaaaaac tcaaaaggat tggatttcct      3000
     gactggttga caaaatggat ctcttcttac ctcagcggcc gttttgcatc cgtgaagctt      3060
     ggggcggtta agtcggatcc tttccaggtt acttccggcg tcccccaagg gagccatctt      3120
     ggaccgcttc tcttcgtgct ttttgtgaac gacctctgca gtgaattgaa gtcttccaaa      3180
     acaatgtacg ctgacgattt gaaaattttc cgcgttatat catctctagt ggactgttgt      3240
     gctttacaag aggacatcga gcacgttttg agatggtgtg aaaggaacgg aatggaggtg      3300
     aatgtacaga aatgtaacat aatcaccttc gcgcgcattc gctctccgat agttttcagc      3360
     tacgcggtga aggattgctc tttgaacaga gtctcactcg taaaggatct tggtattctg      3420
     ctggacagta aactacgttt caccgagcac atttcatcag tcgttgccaa atcgttcgct      3480
     gtattgggca tcataaaacg caatgctcgt gaatttaaag acgtttactg cctcaaaaca      3540
     ctgtacatat cactagtgcg cagtattctc gagtatggtg tagttgtatg gactcctttt      3600
     catgcagtgc atatagagcg aatcgaacga gtgcagaagg cgtttatcag atttgcgctt      3660
     cgacgacttc catggaggaa tcggcctcat ctgcctccct acgaacaccg gtgtgcactg      3720
     atcaacctgc ccacattgaa aacccgtaga acttatttac aacgactttt catctttgat      3780
     ctcctcgaaa acaacatcga ctgtcctgaa ttgttgacgc gacttcgttt taatgtccca      3840
     gcaagaacta ctcgcagaac ggaattcttt cgacgctcca cgcatagaac gcagtacggt      3900
     cagaatagtc ccctttatgt ttgctgtcaa tcttttaacg atgtgaatca atattatgaa      3960
     tttagaataa gtaaactagc tttcaaatca agaattagat tttaagaatt agtctgagcg      4020
     attttttttt tttaatcgaa ggctgtaaat aaataaataa ataaataaat aaataaa         4077
//
ID   CR1_Ele2    repbase;    DNA;    INV; 4005 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4005
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4005
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is ~100%
CC   identical to the original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           226..1056
FT                 /product="CR1_Ele2_1p"
FT                 /translation="MESICFACTNTVKKEDEILCNGFCRSSFHLQCVHQSE
FT                 EIRNTIADCSQLYWMCKACSKMMSNANFRQAISSTNNVISLMTDEYSKALD
FT                 ELRQEIANNTFKINTILQRTPLPSTPHIPRSQLSVPSRKRPRLIADDSSHH
FT                 DNTSVGTRELAPDESIPLAAPRKADQFWLYLSGFDPQATVPQIEKLVKNNL
FT                 NTDKSFDIVKLVPKGKTLDELTFVSFKVGMDLQLKDTALSGSSWQKGIIFR
FT                 QFDFNHSTSTRQTFRFRPSPRDDHSQQSPNITSYHQ"
FT   CDS           899..3952
FT                 /product="CR1_Ele2_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KTPHYPAHRGRRELSSVSSILITPHPLVKRFASDLHQ
FT                 ETTIHNNHQTSHRTINERSSAQLRNTQHTTTPRETITLYYQNVRGLRTKTN
FT                 DVFLALSESDYDIIAFTETWLNNDIHNSELTHNFTIYRCDRNASNSCFQRG
FT                 GGVLIGVRNCLQSTSLTIAECECLEQIVVRITLPDFDLFVCAIYLPPNSDT
FT                 ILYEQHSACVQHLLGLAGDHGRVVVIGDYNLPHLCWMFDEEISSFLPVNAS
FT                 SEQELALIESVVGCGLHQINDLTNANRRLLDLAFVNDDKYVELLEPPQPLM
FT                 KMDNHHKPFVLKFESTMRSECDALDPFDFDFKQCDFSSLNEQIAAVEWNEY
FT                 LNGCHIDEAVATFYDQVYGILRETVPLNQRRRGIGKRQPWWNNELQRLRNR
FT                 LRKARKRYFRSKNEQHKVELRDLESEYNSLHARCFSCYIRRTEENIKHDPK
FT                 SFWSFVRSRKQTNSIPQHVFYKDVNAETPSDSANLFSSFFRSVLSNNRSPS
FT                 SEEYLSSLPRYDLNVAVFNFSTRDVCCKLRGIDDSKTAGPDRLPPLFVKNC
FT                 ADSLTVPATILFNRSLSEGTFPCVWKNAAITPIHKSGNMNNVENYRGISIL
FT                 SCLPKAFESLIHDSLYPHVQHIISEFQHGFVKKRSTTSNLMSYVSSLVKAM
FT                 EKRQQIDAVYIDFTKAFDRVPHSLSVKKLDKMGLPSWLTRWILSYLTERSA
FT                 HVRIAGISSDPFEITSGVPQGSHLGPLLFVLFVNDLCEVIKSQKLMFADDL
FT                 KLFRVVSSLTDCCAVQADIDALVRWCMLNGMEVNVQKCCVITFSRKRNVID
FT                 FGYRMSATNITRVNTVKDLGVLLDSKLNFAQHIAATTAKAYAVLGFIKRNT
FT                 QEFEDVYCLKSLYCSLVRSILEYGVLVWAPYHTTQSNRIERIQRNFIRYAL
FT                 RRLPWTDPVRLPPYEHRCALVHLETLACRRVLLQRLFVFDILSNNVDCSVL
FT                 LTNINLNVPARTTRQADFLRFPVHRTLFGQNNPFYVCCRRFNEVSDRFDFN
FT                 MSKLTFKRSISS"
XX
SQ   Sequence 4005 BP; 1108 A; 921 C; 841 G; 1134 T; 1 other;
     tgtgtgtgta aggtaaacaa ttcgtttaac agcgttttta ctctgtgcta attctgtgtt        60
     ttttccacgt acctgtgtct ttttctgcga attcaactgt acactggacg catctttcgt       120
     cgttttaacg gtgaaaactg gagttcaacg attatctgct ttaactgagc tgaatttctt       180
     aaaataaagc tacatctcaa gagtgaacgg cttcaactat cagcgatgga gtctatttgc       240
     ttcgcttgca ccaacaccgt caagaaggaa gatgagatat tatgcaatgg tttctgcaga       300
     tcttcattcc atctgcaatg cgtgcatcag tccgaggaaa ttcgtaacac gatagctgat       360
     tgctctcaac tgtactggat gtgtaaggcc tgttcgaaaa tgatgtcgaa cgctaatttt       420
     cgtcaggcaa tatcgtccac caacaatgtc atcagtttaa tgaccgacga atactccaaa       480
     gcactggatg aattgaggca ggaaattgca aataacacct tcaaaatcaa cactattcta       540
     caacgwaccc cactaccatc aacaccacat atacctcgat cgcaactttc agtaccgtcg       600
     agaaaacgtc ctcggctaat tgccgatgat tcatctcacc acgataacac atccgtcggt       660
     actagggagc ttgcccctga cgaatccatc ccgctagccg cacctcgaaa agctgatcaa       720
     ttttggttgt atttgtccgg cttcgaccca caagctactg tgccacagat agaaaagttg       780
     gtgaagaaca atctcaacac tgacaaatcg tttgacattg tcaaattagt gccgaaaggg       840
     aaaactttgg atgaacttac gttcgtttct ttcaaagttg gcatggattt gcagttgaaa       900
     gacaccgcac tatccggctc atcgtggcag aagggaatta tcttccgtca gttcgatttt       960
     aatcactcca catccactcg tcaaacgttt cgcttccgac cttcaccaag agacgaccat      1020
     tcacaacaat caccaaacat cacatcgtac catcaatgaa cgatcctccg cacagctccg      1080
     aaacacacaa cacactacca ctccacggga aacgattact ctgtactatc agaacgtccg      1140
     cggacttcga accaaaacaa acgacgtttt cttagcattg tctgaaagcg actatgatat      1200
     aattgctttc acggaaactt ggctcaacaa cgatattcac aactcagaac tcacacacaa      1260
     ctttacgatc tatcgttgtg atagaaatgc cagcaacagc tgttttcagc gtggtggtgg      1320
     tgtgctgatc ggcgtaagaa attgtttaca aagtacgtct ctcactattg cggaatgtga      1380
     atgtttagag caaatcgttg ttcgcatcac actaccagat ttcgatttgt ttgtttgtgc      1440
     gatctaccta ccacccaaca gcgataccat tctatacgaa cagcactctg cctgtgttca      1500
     acatttgctg ggtctcgccg gcgatcatgg tcgtgtggtg gttatcggtg actacaatct      1560
     cccccacttg tgttggatgt ttgatgagga aattagctct ttcttgccgg tgaacgcttc      1620
     atctgagcaa gaattagcct tgatcgagtc agtggttggc tgcggtctac atcaaattaa      1680
     tgacttgact aacgctaatc ggaggcttct cgatctggcg tttgttaacg atgataaata      1740
     tgtggagcta ttggagccac cgcaaccgtt gatgaaaatg gacaaccacc acaaaccctt      1800
     tgttttgaaa tttgaaagta ccatgcgtag cgagtgtgac gctttggacc ccttcgattt      1860
     tgatttcaaa caatgtgact tctcatcgct caatgaacaa atagctgcag ttgaatggaa      1920
     tgagtacctt aatggatgtc atattgatga agcagtggca acattttatg atcaggtgta      1980
     tggaattctt cgtgagactg ttccgttgaa ccagagacgt cgaggtatcg gaaaaaggca      2040
     accctggtgg aataatgaac tacaacgtct acgtaatcga ctgcgcaagg ctaggaaacg      2100
     ttattttcgt tcgaaaaatg aacagcacaa agttgaactg cgtgacttag agagcgaata      2160
     caactctttg catgcacgat gctttagctg ttacattcgt cgcacggagg aaaatattaa      2220
     gcatgatccg aaatcgtttt ggtcgttcgt gagaagtaga aagcaaacaa atagcattcc      2280
     tcaacatgtt ttttacaagg acgtgaacgc cgaaacacca tctgattcgg caaatctgtt      2340
     ctcgtcattc tttcgaagtg tgctaagtaa taaccgatca ccttcgtctg aagagtacct      2400
     gagcagtttg ccacgatacg atttgaacgt tgctgttttc aacttttcga cgagggatgt      2460
     gtgctgcaag ctgcgaggaa tagacgactc aaagaccgct ggacctgacc gccttcctcc      2520
     tctcttcgtc aaaaactgtg ctgactcgct tactgttcct gcgactattc tcttcaaccg      2580
     ttcattgtcc gaaggaacat tcccgtgcgt ttggaaaaat gctgctatta ctcccataca      2640
     caaatcgggt aatatgaaca acgtcgaaaa ctaccgtggc atctccattc tgagttgtct      2700
     gccaaaagct tttgaaagcc tcattcacga ttccctctac cctcacgtgc aacacatcat      2760
     ctctgagttc caacatggct ttgtgaaaaa acggtcaaca acttcaaatt taatgtcgta      2820
     tgtgtcttcg ttggtgaaag cgatggagaa gcgccaacaa atcgacgcgg tctatattga      2880
     ctttacgaaa gcatttgata gagtaccgca ctcactgtcg gtgaaaaaat tagataaaat      2940
     gggtctgccc tcttggttga cacgatggat actctcgtac ctcaccgaac gcagcgctca      3000
     tgtacgtatt gctggtataa gttccgatcc ctttgaaatt acatcaggcg tcccccaggg      3060
     gagccacctg ggtccgctgt tgtttgtgct gtttgtcaac gacctttgcg aagttattaa      3120
     atcccaaaaa ctaatgttcg cggacgattt gaaattattt cgtgtggttt catcgttgac      3180
     tgattgttgc gctgtgcaag ctgatattga cgccttggtg agatggtgca tgctgaatgg      3240
     aatggaagtg aatgttcaaa aatgttgcgt catcactttt agccgaaaga ggaatgtgat      3300
     tgacttcgga tacagaatgt cggcaactaa tatcaccaga gtcaacaccg taaaggacct      3360
     cggggttcta ttggacagca aattgaattt cgctcagcac atagctgcaa caactgccaa      3420
     ggcatatgcg gtacttggat ttatcaaacg caacactcag gagtttgaag atgtctactg      3480
     cctgaagtct ctctactgct cgttagtacg aagtattctg gaatacggcg tacttgtttg      3540
     ggcgccatac cataccaccc aatccaaccg gattgaacga attcagcgca actttattcg      3600
     ttacgcgctc cgtcggctac catggactga tccagttcga cttccaccgt acgagcatcg      3660
     atgcgccttg gttcatctag aaactttggc ttgcaggagg gttttgcttc aacgcttgtt      3720
     cgtgtttgac atcttaagta acaacgtaga ctgctcagtg ctgttgacca acatcaattt      3780
     aaatgtgccc gctagaacta ctcgacaagc tgattttctc cggttccctg tgcatcgtac      3840
     tttgtttgga cagaacaatc cgttctatgt ttgttgtcgt cgttttaacg aagtatctga      3900
     cagatttgat tttaatatgt ctaagttaac attcaaaaga agtattagtt cataagtatc      3960
     agtctgtgcg acttgttcga agacatgtaa taaataaata aataa                      4005
//
ID   CR1_Ele20   repbase;    DNA;    INV; 5919 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele20.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5919
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5919
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 22
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           254..1573
FT                 /product="CR1_Ele20_1p"
FT                 /translation="MPVEMDGEEGEHGCCNQPCAQCALPIRDGDASVECFG
FT                 RCKLSIHVHCLPDATNEEIVLLRKIRNAAFVCDACLSLAEFDDRHSEKRLD
FT                 EIAKKLEDLAGVAEVVKNFDQSVKRIVRDELARANKRDAAALGDKDDVSHR
FT                 MVTRSSAKRRKIDNLGNRVEEEVTPKSTFAEVLKKRSEKRVIEQPKKILPV
FT                 QKPNPVVVVKPKSGVQVEDVRAELRKKVDARQLNVQRVTSGKSGEVVIALK
FT                 DEQSVKLLRENVEKNMGGLYDVHVRESIKPTIKLIGMSEEMNEQELKETLI
FT                 DQNLAFENLKHFKLCKSYCNEKLRFNNVSAIIELDAETFRKAMLEERLNCG
FT                 WDRCRVVDGLRVTRCYNCCAFNHKSKDCKATTPKCAVCSGNHLVNECKSNV
FT                 NECANCKKMNTDRKLRLDTNHAAWSVLCPVYQKQLEQRKSFVDYSV"
FT   CDS           1577..5752
FT                 /product="CR1_Ele20_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QLMSLHEDFENGERSCVGNIEVVDTPASSGNLIQSIW
FT                 SAEARHDTAPCLNLNALQMAGRLHDHDDPLPASEDPFDEACCPAGCSTVVD
FT                 IRTSLESNGRPKLMGSTSTLSINTSSCSTQTERTSRSMMDAPKPPDTVEIH
FT                 RSSASSDCSGHPSRSVPVFGVGEGAVHLACLGKYYDVCDLSYPESHSTRSK
FT                 TTTKRHHSASSSLPDIQFASSSRSSSSCSTATERTSRSMMDAPKPPDTVEI
FT                 HRSSFSSDCSGHPSRSVPVFGTGEGAVHLACPGKYYDACDPSCPESHSIRS
FT                 KTTTKRHHSASSSTPDIQLSSQYASSIRGSSSCSTVTERTSRSMMDAPEPP
FT                 DTVEIRRSSFPSDCSGHPSRSVPVFGTGEGAVHLACLGKYNDVGSSSYSES
FT                 HPACSDIASNVDQPSLTCHRGRSDSTAASDAIANKLMVYYQNVRGLRTKID
FT                 DFFVTVVDCDYDVIVLTETWLDDRIYSAQLFGNRFMVFRNDRNPFNSTKAR
FT                 GGGVLIAVSNRLNCLLDSAHINPSVEQLWVKVTTPNRAISIGAVYVPPDRK
FT                 TDMLYIENHINSIGAVLSRLDTNDFALVFGDYNQSGLAWNVQSNNIPSIDV
FT                 NRSVISASCSSLLDGFSLHGLVQLNTIFNRNSRLLDFLLVNEVALPDCTIC
FT                 EAPEPLIGLDADHPALETQINMSLPIQYDNFDDPLAFDFNRADFVSMSQAL
FT                 ALIDWQYLETCLCVNEAVDYFTSNLNHIISANVPLRRPSAKPIWGNARLRY
FT                 LKRLRSKALRKYLENKNPLTKQSFVLASNEYRSYNRFLYNGYTNRMQDKLR
FT                 RNPKSFWSFVKTKKKEDGLPSEIYFGDKFAASVVDKSNLLAERFKNVFNDS
FT                 TAAESQIDTALSDTPRDAFNLSMFSVTPDMVESAIRKLKHSNESGPDGIPP
FT                 SILKKCSTELILPLTKLFNASLLQRLFPERWKYSYMFPVFKKGDKKNAENY
FT                 RGITSLCACSKVFEIIVNDVLLSCCKNYILPDQHGFYPRRSISTNLAPFVS
FT                 LCLQNMEAGVQVDVIYTDLKAAFDRVDHSILLAKLGKLGVSSDLVHWFQSY
FT                 LTHRKLCVKLGSANSGYFTNTSGVPQGSNLGPLLFSIFLNDIGFALPTGCR
FT                 ILFADDIKIVVVVRCENDCLVLQHLINVFCEWCDRNFVTISVQKCNVISFH
FT                 RKQKPIIFNYTIDDLPLHRVDTIRDLGITLDSALTFKPHYLDTIAKANRQL
FT                 GFIFKIADEFRDPTCLKALYCSLVRSIIEFGSVIWCPYQRVWIMRLETVQR
FT                 KFVRYALRHLPWRDPTSLPPYEHRCQLLGIDTLESRRSTAQSVFVAKVLVG
FT                 EIDSPEILANLLVYAPERPLRTRSFLHLPARTVNYGLHDPIRYMAARFNEH
FT                 YHLFDFGLATSTFRQRIERVLREEEREDI"
XX
SQ   Sequence 5919 BP; 1635 A; 1349 C; 1321 G; 1614 T; 0 other;
     ttttttttta ctgtgctgac ggcgtgataa gatcgtttac ttcgtctgat cacaaaagtt        60
     atgttttatg tgcgcaaatc tcgcgttatc atatcaaaag tttgtgcttg tgttgtgaga       120
     acattgtgct cgtataatta aacaggaatc ttattgatac gtaaagtgga actcctgaaa       180
     ttcagtgatt catatcagca tattactgaa gctaagttct gttgcctgtt ttgtttgttt       240
     tcgcccgggc gatatgcccg tggagatgga cggtgaagag ggtgagcacg gctgctgtaa       300
     ccagccgtgc gcgcagtgcg ctttgcctat tcgagatggt gacgccagtg tcgaatgctt       360
     cggtcgatgc aaattgtcaa tccacgtcca ctgtttacct gatgcgacga atgaggagat       420
     agtattattg cggaagatta gaaatgctgc gttcgtatgc gatgcgtgtt tgagtcttgc       480
     cgaattcgac gataggcaca gtgaaaaacg attggatgaa attgcgaaga aattggaaga       540
     cctcgcgggt gtagcggaag tcgtaaaaaa tttcgatcaa tcagtgaaaa gaattgtgcg       600
     tgatgaacta gcgcgagcga ataagcgtga tgcagctgct cttggtgata aggacgatgt       660
     atctcaccgt atggttacac gttcgtctgc taaacggcga aaaatcgaca atttgggaaa       720
     tcgcgttgag gaagaagtaa cgccaaagtc aacttttgcg gaagtgttga aaaagcgttc       780
     tgaaaaaaga gtgatagaac aaccaaagaa aattctacca gttcagaaac caaatccagt       840
     ggttgttgta aaacctaagt caggtgttca agttgaagat gtacgggctg agctacgaaa       900
     gaaggtggat gctagacagc taaatgtcca gcgggtgacg agtggaaaat ctggtgaagt       960
     tgtgattgcg ttgaaagatg agcaaagcgt gaagttgttg agggaaaacg ttgagaaaaa      1020
     tatgggcggt ttgtacgatg tgcacgttag agaaagcatt aagccgacta tcaaattgat      1080
     tggcatgagc gaagaaatga atgagcagga actcaaagaa accctgatcg atcaaaactt      1140
     agctttcgag aacctcaagc atttcaaact gtgcaagtca tactgcaacg aaaaactacg      1200
     ttttaacaat gtcagtgcaa tcatcgagct cgatgctgaa acgttccgaa aagccatgct      1260
     tgaagaaaga ttgaactgtg ggtgggatag gtgtcgagtg gtagacggct tgcgagtgac      1320
     gcggtgttac aattgttgtg ctttcaacca caagagtaaa gattgtaagg caacaactcc      1380
     gaagtgcgct gtgtgtagtg gaaatcacct ggtgaatgaa tgtaaatcga acgtgaatga      1440
     atgtgctaat tgtaaaaaaa tgaacactga tcgcaaactg agacttgaca caaaccacgc      1500
     tgcatggagc gttttatgcc cggtgtacca gaaacaactt gaacagcgta agagtttcgt      1560
     cgactattcg gtttagcaac taatgtcctt gcacgaagat ttcgaaaacg gtgaacgcag      1620
     ctgtgttgga aatatagaag tagttgacac tcctgcttcc tcaggtaatt taattcaaag      1680
     tatatggtct gccgaagcta ggcatgatac tgccccctgc ctgaatttaa acgcactcca      1740
     gatggctggc cgattgcacg atcatgacga cccacttcct gcatctgagg atccttttga      1800
     cgaagcctgc tgtcctgctg gatgttctac agtagttgac atccgtactt cgttagagag      1860
     caatggacgt ccaaagttaa tgggtagcac gagtacactc agtatcaaca cttcttcttg      1920
     ttctacgcaa acggaacgca cgtcacgaag catgatggac gcccccaagc ctcccgacac      1980
     agtcgagatt caccgatcat ctgcctcatc tgattgttcc ggccatccaa gccgttccgt      2040
     tcctgtgttc ggggtcggtg aaggggccgt ccaccttgct tgtctaggca agtattacga      2100
     cgtatgtgat ctttcgtacc ctgaatctca ttcaactcgc agcaaaacaa caacaaaacg      2160
     tcatcattcc gcatcatcaa gtttacctga catccagttt gcatcatctt cacgtagctc      2220
     ttcttcttgt tcaacggcaa cggaacgcac gtcacgaagc atgatggacg cccccaagcc      2280
     gcccgacaca gtcgagattc accgatcgtc attttcatct gattgttccg gccatccaag      2340
     ccgttccgtt cctgtgttcg ggactggtga aggggctgtc caccttgctt gtccaggcaa      2400
     gtattacgac gcatgtgatc cttcgtgccc tgaatcccat tcaattcgca gcaagacaac      2460
     aacaaaacgt caccattccg catcatcaag tacacctgac atccagttaa gcagccagta      2520
     tgcatcgtct atacgtggct cttcttcttg ttcaacggta acggaacgca cgtcacgaag      2580
     catgatggac gcccccgagc cgcccgacac agtcgagatc cgccgatcgt catttccatc      2640
     tgattgttcc ggccatccaa gccgttccgt tcctgtgttc gggactggtg aaggggctgt      2700
     ccaccttgct tgtctaggca agtataatga tgttggttcc tcttcgtact ctgaatccca      2760
     tcctgcttgc agtgacatcg catcaaacgt tgaccaacca tcattgacgt gccatcgagg      2820
     tagatctgat tccactgcag cttcagatgc catcgccaac aagctgatgg tttattatca      2880
     aaatgttcga ggactgcgga cgaaaatcga tgactttttc gtgactgtag tggactgcga      2940
     ctacgatgta atagtgctta ccgaaacttg gctcgacgac cgaatctatt cagctcagct      3000
     gtttgggaat cgattcatgg ttttccgcaa tgaccgcaat ccgtttaaca gcaccaaagc      3060
     aagaggtggt ggagtattga ttgcggtttc aaatcgttta aactgtcttt tggactcagc      3120
     tcacatcaat ccttctgtcg aacaactctg ggttaaggtt acaacaccta accgagcgat      3180
     tagtattggt gctgtatatg tccctcctga tcgcaaaaca gacatgctgt atattgaaaa      3240
     tcacattaac tcaattgggg ctgtactgtc ccggcttgac actaacgact ttgccctcgt      3300
     atttggtgat tacaaccagt ctggtttggc ttggaatgtg caaagcaaca acattccatc      3360
     gattgacgtc aaccgctctg tcatatcagc ctcgtgcagc tctcttttgg acggcttctc      3420
     tctgcatggt cttgtgcagc tcaatacgat tttcaacaga aactcccgat tgctcgactt      3480
     tttgctagta aacgaagttg ccctccccga ctgtacaata tgcgaagcgc ccgagccgtt      3540
     gattgggctt gatgcagatc atcccgcact agaaacgcaa atcaatatgt ctttacccat      3600
     tcagtatgac aacttcgacg atccactggc ctttgacttc aacagagctg actttgtttc      3660
     aatgtcacaa gcacttgctt taatcgactg gcaatacctc gaaacttgcc tctgtgtcaa      3720
     tgaagctgtt gactatttta ctagtaatct gaaccatata atatcagcaa atgtgcctct      3780
     gcgaagacca agtgcgaaac caatttgggg caacgcacgc cttcgatact tgaagcgttt      3840
     aaggtccaaa gcactacgga agtaccttga aaacaaaaac ccgttaacca agcaatcttt      3900
     tgttcttgca agcaatgaat accgcagcta caatcgtttc ttgtacaacg gctacactaa      3960
     tcgcatgcag gataaacttc gcaggaaccc aaaatcgttt tggtcatttg tgaaaactaa      4020
     aaagaaagag gatggtctcc ctagcgaaat ttatttcggc gacaaattcg ctgcatcagt      4080
     ggttgataaa agcaatcttc tagcagaacg tttcaaaaac gtgttcaacg actcgactgc      4140
     cgctgaatca caaatagata cggcgctcag tgatacacca agggatgcgt tcaatctcag      4200
     catgttttct gtcactccgg atatggttga atcagcgatt cgtaagctaa agcattcaaa      4260
     cgaaagtggc ccagatggta tcccaccaag catcttgaaa aaatgctcta ccgaacttat      4320
     tctgcctttg acgaagctgt tcaacgcctc tttgctccaa agattgtttc cagagcggtg      4380
     gaagtattct tacatgtttc cggtattcaa gaaaggagat aagaagaatg cggaaaacta      4440
     tcgaggcatc acatcactct gcgcctgttc caaggttttt gagataattg tcaacgatgt      4500
     cctactctcc tgttgtaaaa actacatttt acctgaccaa catggtttct acccccgaag      4560
     atcgatctca actaacctcg ctcccttcgt atcactgtgt ctgcagaata tggaagcagg      4620
     agtacaagtg gacgttattt acaccgacct caaagcagcg tttgatcgcg tcgaccactc      4680
     catactactt gctaaattag gcaaacttgg cgtatcgtcg gatttggttc actggttcca      4740
     gtcataccta acgcaccgga agctttgtgt aaagctaggt tcagcaaatt cgggctactt      4800
     tacaaacacc tcgggagttc cccaaggcag caacctaggg ccgctgttgt tctccatctt      4860
     tctcaacgac attggattcg ctcttcctac tggatgcaga attctgtttg ctgacgacat      4920
     caaaattgtt gtagttgttc gctgcgagaa cgattgtctg gtgctacaac atctaatcaa      4980
     cgttttttgc gaatggtgcg ataggaactt cgtcaccata agtgttcaga aatgcaacgt      5040
     gatcagtttt caccgcaagc aaaagccaat tatattcaac tataccattg atgatctgcc      5100
     actacatcgt gtagatacta ttcgagacct aggtatcacg ctagattcag ctctaacttt      5160
     taagccccat tatctggaca ctatcgccaa agctaatagg cagctcggat ttatattcaa      5220
     aattgcggat gaattccgtg acccaacctg tctcaaagcg ttgtactgtt cccttgtgcg      5280
     ttccatcata gagtttggat ccgtcatctg gtgcccatac caaagggttt ggataatgcg      5340
     actggagact gtacaaagaa aatttgtgcg ctatgccctt cggcatctgc cgtggagaga      5400
     ccccacaagt ctgccaccat atgaacatcg gtgtcaactg ttgggtattg acacacttga      5460
     gagcagaagg tctacagctc aatcagtgtt tgtagctaaa gttttggtag gcgaaattga      5520
     ttcaccggaa attcttgcca atctgttagt atatgcacca gaacggccac tccgtacaag      5580
     aagtttccta catctccctg ctcggacagt taattacgga ttacatgacc ctattcgata      5640
     catggcagca cgcttcaacg agcactatca cctcttcgat ttcggcttgg caacttctac      5700
     atttcgacaa cggattgaac gagtgttacg cgaggaagaa cgggaagata tttgatattt      5760
     gtttgacgca tttttaaagt gttagaatta agttattcgt tgtatatgtc ttcaatatgc      5820
     gtttcaaata gttgattata ttttttttta ctttaattgt tcattaagac acatagtcag      5880
     atgaattgac aaatatacaa atacaaatac aaatacaaa                             5919
//
ID   CR1_Ele21   repbase;    DNA;    INV; 4181 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele21.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4181
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4181
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 25
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           362..1219
FT                 /product="CR1_Ele21_1p"
FT                 /translation="MEICNSCAVIMNTSEVACGGFCKATFHYKCAKISESF
FT                 YKEICGNSAVFWMCKGCCDMMKNSRFKNAMISTNAATLELKDAYQKVVEDL
FT                 KTEIKDSLIAELKQEIQGGFNKLSPAVLSPVPRHFQFRGRNTPKRIRDEDA
FT                 SEPTEQPTKIFCGTSQSASNALEARSDENFWVYLTKISPEVSENDVLNLAK
FT                 ERLQTEDVVVRSLVPRGKPLSMLSFVSFKVGVHNDYKSKAMDPATWPKGIQ
FT                 FREFVDNDSNSRHFWKPPQRIDPGATSSIQSQQLSSHPVQEPLPT"
FT   CDS           1102..4122
FT                 /product="CR1_Ele21_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QRFQFSTFLETSATHRSRSNLFDPIAATVESSSPRAT
FT                 SNVDESRSHLKYPSNFSSTFLTVYYQNVRGIRTKTQELLLNLCSCDYDIVV
FT                 LTETWLRPDISNDEFASSYNVFRCDRSSATSSLQRGGGVLIAVKAELNCRS
FT                 VELENCESLEQAVVQIKLQKFSVYVCGIYLRPNSQPELYYSHSMAVQQLCE
FT                 RTASADKVIVMGDYNLPQLIWQNDEDIDGLLPCNASSEQEIALVETMVASG
FT                 LRQINCLRNLNGRLLDLVFVNEARDIEVIEPPSPLLKIDYHHKPLVLRMDL
FT                 NDARMQFAEDSSQQRDFDFQRCDFAELNDAISAIDWEIAFDGRGTDETVCI
FT                 FYDILYGILDEHVPRRRRTRCSYKHPWWTSELQHLRNVVRKSRRRYFRART
FT                 DENRNNLRLIETSYNECQTAAFRSYVARLETTAKHDPTAFWNFIRNRKHST
FT                 RFPAEMTYKKTIASCPEDVANMFADCFKNVYSSNPPTFSSDNLRNCPTYDL
FT                 NLAPFDISRQDVYSALKNLDVTKGAGTDNLPPLVLKECAESLQMPLEIIYN
FT                 KSLRNSTFPSIWKKASITPIFKAGSSHAVENYRGVSILCSVAKVFEGLVHN
FT                 VLYAASTPIISELQHGFVKKRSTTTNLMMFTNFLSTEIEKRSQVDAIYFDF
FT                 SKAFDKVPHELAIAKLRHLGFPDWITEWLRSYLTQRVAFVNINGTHSSVFS
FT                 IASGVPQGSVLGPLIFILFINDLCFRLKSGKLFYADDLKIYRTIASHLDCC
FT                 ALQADIKELELWCMENGMELNIKKCKSVVFSRRQSCIEFGYSIGSEPLERV
FT                 ESIRDLGVILDSKLRFNEHVNATTAKAFAALGFVRRNASCFKDIYALKALY
FT                 CSLVRSILEYAVCVWSPQHTTHIIRIEKVQRSFIRFALRQLPWSDPFNLPD
FT                 YTSRCRLIALQTLSSRRSNLQRLFMFDLIRGNLDCPSLLQNVSFYAPNRHL
FT                 RQRDLLLIRRHRTSYGFNNPLCVCSRLFNSVSDLFDFNVSKSVFKSRIRVL
FT                 E"
XX
SQ   Sequence 4181 BP; 1161 A; 980 C; 901 G; 1139 T; 0 other;
     tacgcaaacc ctgaaagcgt catacacgca tccaattgta tccgtcaagc caatacactg        60
     tacctgctgc tgcttatctt ctcaatccgc aatccgaaat ccccgccaga gccacgtcaa       120
     gagcctcaac cgttttccat tccgtatcgc tgcaagttca tcttctccgc ttcatcatcg       180
     ttcaagccag gtaaacaatc cacaattcgt cggctgttgt gtgagtagag cgattataga       240
     gaacacacat tttcgcatct gtcactgcca gtgttgccag tattctcgac ttttttggag       300
     taacgcttga gtgacgctcg tgtagtcaaa cgaccgattt gaatcgaccg ttgttttcac       360
     gatggaaatc tgcaacagtt gcgcagtcat tatgaataca tcggaagtgg catgcggcgg       420
     tttttgcaaa gcaacattcc attacaagtg cgccaaaata tcggaatcgt tttacaaaga       480
     aatttgcgga aactcggccg ttttttggat gtgcaaggga tgttgcgata tgatgaagaa       540
     ctctcgattc aaaaatgcaa tgatatcgac aaacgccgct actttggaac tcaaagacgc       600
     ttatcaaaaa gtcgtcgagg atcttaaaac tgagataaag gatagtttga tcgccgagct       660
     gaagcaagaa atccaaggtg gtttcaacaa attgtcccct gctgtgcttt caccagttcc       720
     acgtcatttc cagttcaggg gtcgcaacac tcctaagcgc atccgtgacg aagacgcctc       780
     tgaacctacg gaacaaccaa caaaaatctt ctgcggtacc agccagtcag caagcaacgc       840
     actggaagct agatctgacg aaaacttctg ggtgtattta actaaaatat cacctgaagt       900
     ctcggagaac gacgtgctca atctagctaa ggagcgcctg cagactgaag atgtggtagt       960
     aagatccctg gttcctagag gtaagccgct atcaatgttg tcgtttgtgt cctttaaggt      1020
     aggggtccac aacgattaca aatcgaaagc aatggatcca gcaacatggc ctaagggaat      1080
     acagtttcgt gagtttgttg acaacgattc caattctcga catttttgga aacctccgca      1140
     acgcatcgat ccaggagcaa cctcttcgat ccaatcgcag caactgtcga gtcatccagt      1200
     ccaagagcca cttccaacgt agatgaatcg cgcagccacc tcaagtaccc ctccaacttc      1260
     tcttcaacct tcctgacagt ctactatcag aacgttagag gcatccgaac aaaaacgcaa      1320
     gaactactct tgaatttatg ctcttgtgac tatgacatcg tagtactcac cgaaacttgg      1380
     ctacgcccgg atatttctaa tgacgaattc gcctcaagct acaacgtatt tcgatgcgat      1440
     cggagctcgg ctactagcag ccttcaacgt ggtggaggag tgctaattgc agttaaggcg      1500
     gaattgaatt gcagatcggt ggaactagaa aactgcgaat ccctcgaaca agccgtcgtt      1560
     cagatcaagc ttcaaaagtt ttcagtttac gtttgtggga tatatctacg accaaactcg      1620
     cagcccgagc tttattactc acattccatg gcagtgcaac aattatgtga acgaactgcg      1680
     agtgccgaca aggttatcgt catgggagac tacaatcttc cccagttgat ctggcagaac      1740
     gacgaagata ttgacggtct actgccttgt aatgcttcat ccgaacaaga aatcgccttg      1800
     gtcgaaacaa tggttgcttc aggactgcgt cagatcaatt gcctacgaaa cttgaacggc      1860
     cgcttactgg accttgtttt tgtcaatgaa gcaagggaca ttgaggtaat cgaaccaccg      1920
     tcaccgctcc tcaaaattga ttatcaccat aagccgctgg ttcttcgtat ggacttaaac      1980
     gatgctcgta tgcagtttgc cgaggattcg agccaacagc gtgacttcga ttttcaacgc      2040
     tgtgattttg cggagttgaa cgatgctatt tcagccattg actgggagat agcgtttgac      2100
     ggtaggggca ccgacgagac ggtatgtatt ttttacgaca ttctgtacgg aattttggac      2160
     gagcacgtcc ctcgtagacg acgcacgcgt tgttcttaca aacatccttg gtggacatcc      2220
     gagctgcaac atcttcgcaa tgttgttcgc aaatctcgaa gacgttattt tcgagcgcga      2280
     actgatgaaa atcgaaacaa tttacgtctt atcgaaacca gttataatga gtgtcaaact      2340
     gctgcatttc gaagctacgt cgctcgtttg gagacgaccg ctaagcacga tcccacagcc      2400
     ttttggaatt ttattcgaaa tcgcaaacac tcaactcgat ttcctgctga aatgacttac      2460
     aaaaaaacta tcgctagctg ccctgaagat gttgctaata tgtttgccga ctgctttaag      2520
     aacgtgtaca gttcgaatcc accaacgttt tcatcggaca acctcagaaa ttgcccaact      2580
     tacgatctga atctcgcgcc tttcgatatt tcgcggcaag atgtatattc agctttgaaa      2640
     aatctggacg taaccaaagg ggctggtact gacaatttgc cgccgttagt cttaaaagaa      2700
     tgtgcagaat cgttgcaaat gccgctggag attatctata ataagtcgct tcgtaatagc      2760
     acttttccgt cgatatggaa gaaagcctca atcactccta tcttcaaagc tggttcttct      2820
     catgctgtcg aaaactaccg tggcgtttca attttatgct ccgtagctaa agtttttgaa      2880
     ggtttagttc acaatgttct ctacgctgca tctaccccaa taatttcgga actccagcac      2940
     ggcttcgtca aaaagcgatc aacgacaact aaccttatga tgttcactaa cttcctatcg      3000
     acagaaatcg aaaaaaggag ccaagtagat gccatatact tcgatttctc caaagcgttc      3060
     gacaaagtgc cacacgaact agcaatagcg aagctaagac acttgggctt tccggattgg      3120
     ataacggagt ggttgcgatc gtatctgacg caacgcgtag cattcgtcaa cattaatggc      3180
     acacactcta gcgttttctc tattgcttct ggtgttcctc agggaagcgt tctggggcca      3240
     ctgattttca tattgtttat aaacgacctg tgcttccgac tgaaatcggg aaagctgttc      3300
     tacgctgacg atttaaaaat atacagaact atagcatctc atctggactg ctgtgcgcta      3360
     caagcagata taaaggaact cgagctgtgg tgcatggaaa acggcatgga gttgaacatc      3420
     aaaaagtgta agtccgttgt attttcccgt cgacaatcgt gcatcgaatt tggatattcg      3480
     attggatcag aaccattgga acgcgttgag tcaatccgag acttaggtgt tattctggac      3540
     agtaaactgc ggtttaatga acacgtcaat gctacaactg cgaaggcgtt tgcagcctta      3600
     ggatttgttc gacgaaatgc tagctgcttc aaggacatct atgctctcaa ggcgttatat      3660
     tgctcgcttg ttcgtagtat tttggagtat gctgtatgtg tatggtctcc acaacatact      3720
     acccacatta tccggattga aaaggtccag cgtagcttca tccgcttcgc ccttcggcag      3780
     ctgccatggt cggatccgtt taacttgcct gattacacgt cacgctgcag actcattgct      3840
     ttgcaaacac tttcttcgag acgcagtaac ctacaaaggc tttttatgtt tgacttgatc      3900
     agaggaaatc ttgactgtcc atcgctcctg caaaatgttt cgttctacgc accaaaccga      3960
     catctgcgac aacgtgattt gctgctcatc agacggcata gaacttccta tggcttcaac      4020
     aatccgttat gtgtatgttc tcgattattc aatagtgtga gtgacttgtt tgactttaat      4080
     gtatccaaat ctgtgtttaa aagtagaatt agagttttag agtaagagac agtctgggga      4140
     atcgtactag attcaagaca gtgaataaat aaataaataa a                          4181
//
ID   CR1_Ele22   repbase;    DNA;    INV; 4365 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele22.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4365
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4365
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 19
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           566..877
FT                 /product="CR1_Ele22_1p"
FT                 /translation="MSFIYVASRDGLSCESAKAIPLIKQGTDVNSLNFISF
FT                 KVGVDPKYRSAALDPSSWPKGILFREFEDNKAKSFWMPKPSTPSINTTTNF
FT                 DETPQITAASMETTEC"
FT   CDS           881..4294
FT                 /product="CR1_Ele22_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PQGAHCKVFMGASGPSNTVESSTRNSNTSIMLSCHRS
FT                 RPGPVFGNRLEVSQPTNEGKYESLRICSCSDVVSASSSFNCFQIVTSHDER
FT                 NNAHRNTKLNSSYHRSTGCMQQSFMEAPRPFAAVEPATNLVTDTTSSSLHH
FT                 SHPVPASESGLGVFQTSLPGEHSSCSASTFPDESLTPSNITTTTSSQPLSI
FT                 YYQXVRGLRTKTNHLRSQLSSCDYDVLLFTETWLRPDIENAEFASHYNVFR
FT                 CDRSASTSQFSRGGGVLIAVHNRPQCESVEWTNGENLEQAAVRIKLSDRLL
FT                 YILAIYLPPNSSIEVYNAHALSIQHIVGLLSDFDIFLALGDYNLPNLRWLF
FT                 DEDINGYLPSNASTEHELAMVEAMFTSGLQQVNHFVNVNGRLLDLAFANLP
FT                 EHLDLIEPSVPFLPVDSHHQPFIVLLDACCDILSTCPNIGESLYFDFQKCN
FT                 FELLDNAFSTIDWELLNGPTVEELLSDFNRRVYEVIQEIVPRKRLPSTSVY
FT                 SKPWWSPELRNLRNILRKARNRYFKSKSESDKIQLRELENTYKNRLSVTYE
FT                 NYISAVQTNVKQNPSLFWNYVKRQRSSDRIPSNVRYAGSMAATDSETADLF
FT                 AAFFENVFSRASPVPRADRFEDVPSYNISIPECHFSNEDVLPVLEDLDDKK
FT                 GPGVDGFAPILFKKCAHVLAKPIAAIFNRSIQERKFPSAWKTAIIVPIHKA
FT                 GSQHLVENYRGISVLCCLSKVFEKLLHKVLYNAASSIMCEYQHGFVRNRST
FT                 TSNLMCYVTAISRAMESKQQVDAIYIDFAKAFDTVPHLVVVEKMEHLGFPR
FT                 WITSWLFSYLSDRNAFVKVNFARSKLFEISSGVPQGSVLGPLIFIIFVNDL
FT                 ILKLSSYKLSFADDLKIFRIISTAADCLALQNDIDALLVWCDDNGMRVNSG
FT                 KCKIISFTRNSTLRLHQYTIGTTLLERVQSICDLGVTIDSKLRFNKHISTI
FT                 TAKAWSVLGFIRRHASEFTDIYALKTLFCALVRSILEYAAPVWTPYHLSYS
FT                 LQLERVQKCFLRFALRGLPWRDPENLPSYPERCQLINLETLSERRAKSQQV
FT                 FIFDIITGNLDCPMLLSEVPFYVPPRSLRNAPFLANPVHRTSYGQNNPFSA
FT                 GVRAFNNVSVLFDFDMSKAVFKNRLRNVIS"
XX
SQ   Sequence 4365 BP; 1191 A; 1032 C; 904 G; 1236 T; 2 other;
     aattggcatc actgctaatc gttgttatgc aagtcgtatt cggcctcgaa atttatctaa        60
     attagtagtg ttctttacct gataaattat cggtttttgt ctccgtattt gtcgaaaagt       120
     ctaatttatc aaatccgtgg ttgtttaagt gcactggttg taccgttgtg acattatttg       180
     tttgtttttc attgctttgc ttacttgcaa ttgtactcgg tcactatcgt cttatcaact       240
     aacgcgacgc cttacagtgg gtatcgcaag ctccacaagc tctactatcg ttgtgctttc       300
     atctgttcga acaagcaacc acagctgtgt tggattatac ttccacataa cgaattcaca       360
     tctgcaatag gcagtaggtc gcagataaga gtgttgaagt gcagaaagct tgcggtttta       420
     ggctgatcca gaaactcaaa aatcgaggag atttctctca ggataaattc gatatttaac       480
     atcgagatgg ccgctgcttg tgaccgttgc gccaaggcga tcaagcgggt cgatgacgtg       540
     atcacctgca tggggttctg cgaacatgtc gttcatttac gttgcgtcga gagatggatt       600
     gagttgcgaa tcagcaaaag cgataccgtt gatcaagcag ggaacagatg taaattcatt       660
     gaatttcatc tcgttcaaag tcggtgttga tcccaaatac cgatcagcag ctcttgatcc       720
     ttcttcgtgg ccaaaaggta tcctgttccg agagttcgag gataataaag ccaaaagctt       780
     ttggatgcct aaaccaagta ctccatcaat caacaccacg acgaattttg atgaaacacc       840
     tcagataact gccgcttcca tggaaaccac agaatgctga ccccagggtg cacactgtaa       900
     agtatttatg ggagcctctg gtccttccaa cacagtcgag tcatcaacac gtaattcaaa       960
     cacttcaatc atgttatcct gccatcgaag tcgccctggt cctgtgtttg gaaacagatt      1020
     agaggtctcc caacccacga atgaaggcaa gtacgaatca cttagaatct gttcctgctc      1080
     tgatgtagtt tccgcttcca gctcgttcaa ttgctttcaa attgttacgt cacatgatga      1140
     aagaaacaac gcccaccgta acacaaaact caactcttcc taccatcgst caacggggtg      1200
     catgcagcaa agcttcatgg aagcccctag gcccttcgcc gcagtcgagc cagctacgaa      1260
     tttggtcacc gatacaacgt ctagctcttt gcatcatagt caccccgttc ctgcgagtga      1320
     atccggtcta ggggtcttcc aaacttctct cccaggtgag cattctagct gcagtgcatc      1380
     tacctttcct gatgagtctc tcactcctag caacatcacc acgacgacat ctagccaacc      1440
     gctttccatc tactaccaaa wcgtgcgagg attacgcaca aaaacgaatc accttcgctc      1500
     acaactgtcg agctgtgact atgacgtttt attgttcacg gaaacgtggc tccgaccgga      1560
     catcgaaaat gcagagtttg cctcccacta taatgtgttt cgttgcgacc gcagtgcatc      1620
     gacaagccaa ttttcgcgtg gtggaggagt actgatcgca gtccacaatc gtccacaatg      1680
     cgaatcagtc gaatggacca acggtgagaa ccttgaacaa gctgctgttc gcatcaagct      1740
     gtcggatcgc ctgctttaca tactggcgat ataccttcct ccgaactcaa gtatcgaggt      1800
     ttacaatgca cacgcgttgt ccatccagca tatagtgggt cttctttcgg acttcgacat      1860
     cttcttggcg cttggtgact ataatctccc aaatctacgc tggctcttcg acgaggatat      1920
     caacggttac cttccatcta acgcatctac tgagcacgaa ctggcaatgg ttgaagccat      1980
     gtttacttca gggctgcagc aagttaatca cttcgtcaat gtaaatggta gacttctgga      2040
     tttggcattc gccaatctac ccgagcacct tgacttgatc gagccatctg taccttttct      2100
     accagttgat tcgcatcatc agccgtttat tgtactactt gacgcttgtt gtgatatttt      2160
     atcaacatgt cccaacatag gagaaagttt gtatttcgat ttccagaaat gcaatttcga      2220
     gcttttggac aatgctttct ctaccattga ctgggaactt ctaaatggac caacagtaga      2280
     agaactgctt tcggatttca atcgaagagt gtatgaagtg attcaagaaa ttgtaccacg      2340
     caaacgactt ccatccactt ctgtgtacag caaaccatgg tggtctccgg agttgagaaa      2400
     tctacgaaac attctacgta aagctcgaaa tcgttacttc aagtctaaat ctgagagtga      2460
     taaaatccaa cttcgagagc tcgagaatac gtacaaaaac cgactcagtg ttacgtacga      2520
     aaattatatc tcagcagttc agacgaacgt gaaacagaac ccatcccttt tttggaacta      2580
     tgtgaaacgt caacgatcaa gcgatcgaat tcccagtaac gttcgctatg ctggttctat      2640
     ggcggctacc gattcggaga ctgctgatct tttcgcagca ttcttcgaaa atgtgttctc      2700
     tagagcttca cctgtgccac gggccgacag gtttgaagat gttccatcgt acaacatttc      2760
     aattcctgag tgccactttt caaatgagga tgtattgcct gttctcgaag acctggacga      2820
     caagaaagga ccaggcgttg atggttttgc tcctatcttg tttaaaaaat gtgcgcatgt      2880
     gcttgcgaaa ccaattgctg caatcttcaa tcgctctatc caggaacgga aatttccgtc      2940
     agcatggaag actgcgataa tcgtgccgat tcacaaggca ggtagtcaac accttgtaga      3000
     aaattatcgc gggatatccg tactatgctg cctcagcaag gtgtttgaaa aactcctaca      3060
     taaagtgcta tataatgctg catcatcgat aatgtgtgaa taccaacatg gatttgtaag      3120
     aaaccgctca actacatcca acttgatgtg ctatgttacc gcaatttccc gagcaatgga      3180
     gtcaaaacag caagtggacg caatttacat cgatttcgcc aaagcgttcg atacggtccc      3240
     acatctagtg gtcgtggaaa aaatggagca tcttggattt ccaagatgga ttacatcgtg      3300
     gctgttttcc tatctgtcag atcgaaatgc ttttgtaaag gtcaattttg cgcgatctaa      3360
     actcttcgaa atctcttcag gggtaccgca gggcagtgta ctcggacctt taatcttcat      3420
     tattttcgtg aatgatttaa ttttgaagct ttcgtcgtac aaactgtcgt tcgccgatga      3480
     tcttaaaatc tttcgcatca tttctaccgc ggcagactgc cttgcacttc aaaacgacat      3540
     cgacgcactg ctggtttggt gcgacgacaa cggtatgcga gtcaacagcg ggaagtgtaa      3600
     aataatatca tttacacgca atagtacact tcggttacat cagtacacca ttggaacgac      3660
     actattagaa cgagtccaat ccatttgcga tcttggagta actatcgact ctaagctccg      3720
     attcaacaag cacatttcta ccataaccgc aaaagcgtgg tcggttctag ggttcattcg      3780
     tcgacatgca tcggagttca cagacatcta cgctctgaag acgctgttct gcgccctggt      3840
     gcgaagtatt ttagagtatg cagctccggt ctggacaccg tatcatttgt cgtactcttt      3900
     acaactggag cgtgtacaaa agtgttttct gcgatttgca ctgagaggcc ttccttggag      3960
     agacccggaa aacttgccaa gctaccctga acgatgccag ctaattaact tagagactct      4020
     ctcggaaaga agagcaaaat cgcaacaagt tttcattttc gacatcatta ccggaaacct      4080
     ggattgtcca atgcttcttt ctgaggtacc tttctatgtt ccaccacgaa gtcttcgcaa      4140
     tgcacccttc ctcgccaatc ctgtccacag aaccagttat ggtcaaaaca atccgttttc      4200
     cgctggcgta agagcattca ataatgttag tgtgttgttt gattttgata tgtcgaaagc      4260
     tgttttcaaa aataggttaa gaaatgtgat atcgtaattt tatattttac catctgtacg      4320
     accaagtcga agatatgaat aataaataaa taaataaata aatat                      4365
//
ID   CR1_Ele23   repbase;    DNA;    INV; 6333 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele23.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6333
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6333
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 13 sequences with >98% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           1354..1884
FT                 /product="CR1_Ele23_1p"
FT                 /translation="MSCNKRQKVIDDADRVNCRGYCGNSYHMICVMLDYSL
FT                 RDILKGHEKNLFWMCDGCAEMFSSDHFRNIASRCTNGHVPDESSFKTLKED
FT                 IAGLKEIVRNLSSXIDSKPVTPVMTTSWPVPNRMSGLNPVPNTHKKKRENS
FT                 QLKEKPSNIRGTKAASELVKTISPPEELFWLYLYIEYI"
FT   CDS           2086..6159
FT                 /product="CR1_Ele23_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KSSKKPTSSHQCDIREKSTPCPVIHQPPGRTXASSLL
FT                 EASDPPITVEFFLPATCSRPGPVYGVFRISNAGKFTVLPNHPCPEVLSASR
FT                 PYPSNVLLRPSFAWIPGRTPDLSFMEASNPPNTVEPFPPAIHSRPGPVFGI
FT                 GGEVFQNTSAGKYFTSTHNTCSETFITSRTRGLSVSGLGFTPILGSMEASH
FT                 PPIKIQSSLPTFNRGPGLVLGSKGSSLASFLVVSDPHQPERTACSIEEVPE
FT                 PLDPVAPFVSSHHSRSGPVVEYGDGIFRPPIAGKYQTLWNNSLPDMPLRFS
FT                 VPHGSIDSLNNIRERINCTSHPLLGPMFDASLQPERTACSTKEVPKPLGSV
FT                 ALAGSGHHSRSGPAAECGDGGFRPFTSGKSPSDGNISSTDARSCFSKHXTP
FT                 NTLRIYYQNVRGLRTKIDDFFLAVSENEYDIIILTETWLNDVIYSAQLFGD
FT                 HYRVYRNDRSSVNSCKSRGGGVLIAISSNFNSFREPASVHDSIEQLWVRVD
FT                 MHQVIVSIGVLYLPPDRKNNLNDIRNHVDSIGSVISRLGPNDLALQFGDYN
FT                 QSTISWTSSETGPPSIDLDRSCLSVASSALFDGFNLHGLTQFNGIKNTRGR
FT                 VLDFVLLNDAALPTCTVRRALEPLVPIDDSHPPIEVDVCCLAPVSFEPEFD
FT                 ATCLDFRKADYTVLNAALLSVDWSFLNSADNVDDAVEYFTNSVNRIVASHV
FT                 PVIRPAPKPIWSNNRLRSLKRRRSAALRRYCNHRSAYLKQQFNTISREYRE
FT                 YNKLSYLRYTTRTQQNLRSNPKKFWAFVRSKRKEDGLPTSMFYGSNTASSA
FT                 AEKCELFAAQFSAAFNDSAATPSQVEDAVHDTPIDVLNFTTFRIDAENVTK
FT                 AIRKLKSSYSAGPDGIPPALLKRCLPALHEPLAVIYNLSFQREQFPSRWKH
FT                 SFLFPIYKKGDKRDVSNYRGITSLSACSKVFEIIVNDVLFNCCSHYISIDQ
FT                 HGFFPKRSVTSNLAQFVSTCLQAMDDGKQVDAVYLDLKAAFDRVDHRILLK
FT                 KLERIGISQDCIEWFRSYLTGRSLCVKIGSCHSTHFRNVSGVPQGSNLGPL
FT                 LFSIFVNDVSLILPPGVKLFYADDAKLYVVVNCIEDCIQLQTLLCKFERWC
FT                 VHNCLTLSIEKCQVITFSRKRKPITFQYSLSDKFLERVQRVRDLGVILDEK
FT                 LTFRFHYDDIISRANRQLGFIMKVTTDFQDPLCLKALYCALVRSILEFADV
FT                 VWCPFQTTWISRIESVQRKFVRFALRTLPWRNDQHLTSYHDRCQLLGIDTL
FT                 ENRRRIAQAMYVVKLLNGTIDSSALLARINFNAPERSLRRHSFLRLEGRNS
FT                 RYGQHDPIRFMSNTFNSVAHLFDFNMPVSAVQQRFSSHFRTNQADQ"
XX
SQ   Sequence 6333 BP; 1649 A; 1526 C; 1305 G; 1843 T; 10 other;
     taagagtgta ttaggagttg gttactctgc cttcactatt agaggtcatt catactcttt        60
     ctagtagcaa atcattatat aaagatctct gccttctcta tcagagacct tacatgatct       120
     atttttggag cttcgccttc tctatcaaag tccaactcat aagaaactct gccttctcta       180
     tcagagcctt acataattat tttggtacat tgccttctct atcgaagtcc aatataaaag       240
     gaattctgcc ttctctatca gagccttaca tgwcattttt gaaacttcgt cttctctccc       300
     ttacattaga tactccacct ttgttagaaa gccttggata actgcagaac agcatgagaa       360
     attgaattgc ttgccatttc atttcgtttc atttcagttt cctaattcaa ttttctgtaa       420
     cattgttcaa acatcatctt gaaaatatta aaaacctcac aaaaattgct tgcttcataa       480
     cttgaataca tttctcaaac ttcaaacatc tcctaccaat tgatattcgc ttgtgggggg       540
     agactagtct gcgccattgt tgtgaccgga ggatkgttct tcatatttct agtaattttc       600
     acgtctttgc ttcattacgt tcgttgaaag actgaataat tttattcatt gtcgtgacat       660
     ttctctatct caaagcctcc tatgttcttt attttctgga ttatttggat acgctattcc       720
     tagctctatc cttctcaaca cacagcactg ttcagagtcc cacgtcctag tgccagacsa       780
     tgatcagccg ctcctaacat ggagaacaga cgctgctttg agccgcttct aacatggaga       840
     acagacgctc tgataagcta caacctcaga agagaggagc cccccttccc tgtcagcata       900
     cgaccaaggt cccaccaggg ttggttaccc gatcttccct acggttactc gtaccccagg       960
     cggcaccacg gctcgtttgt ttatcaacag tcgtgtacgg taccgagtga atattttatt      1020
     tacgttttgt ggacgcacat agtgatttta aatcgttatt tgtcgtttat atgttggaca      1080
     accgatcgtt ttgtcgttgc gtgtaaagtg cagtgctaat atcgaattga agtagtgatt      1140
     cstggtttat tttgtctctg gagatatttg gtgataagtg gtgactgtgt ccattttcct      1200
     tgtggtaaaa agttgaacct agggttgcat acaacacgcg atctgtaaaa gcttttctat      1260
     cgcatacgct gtgaagtata cccaaaggcg ctttgattct ggtcgccagt acagtattct      1320
     ctcctgttgt acgggtttca tcgaaccgag atcatgtcat gcaacaagcg ccagaaagtc      1380
     atcgatgatg cggatcgagt taattgccga ggatattgtg gaaattcgta tcatatgatt      1440
     tgcgttatgc tggattattc tctccgtgac attctgaagg gccatgagaa aaaccttttc      1500
     tggatgtgcg atggttgtgc tgagatgttc tccagtgacc actttcgaaa cattgcgtct      1560
     cgttgtacta atggccacgt tccggatgaa agttcsttca aaacccttaa ggaagacata      1620
     gcagggttaa aagaaatagt taggaacctg tcgtccawaa tagactcgaa gccggttact      1680
     cctgtgatga ccacatcctg gccggttccg aatcgaatgt ccggattaaa tcctgttccg      1740
     aatacacata aaaaaaaacg cgaaaatagc caactaaagg aaaaaccttc taatattcgt      1800
     ggcactaaag cagcgtccga actggtcaaa acaatctcgc cgccagagga gttattttgg      1860
     ctgtatttgt acatcgagta catctgataa ggacatcgtt accttcgtga agaactgtat      1920
     ggatctcacc gacatggagc cataagttgt aaggcttgtt ccgaaagata aagaccctac      1980
     aactttgagt ttsgtgacat tcaaagtcgg ggttaacaaa gcactcaaag acttggcgct      2040
     ttccagcgaa atctggcccg aaaatgttta tttccgggaa tttgaaagtc atccaaaaaa      2100
     ccaacgtcga gtcatcagtg tgacatcagg gaaaagtcca caccatgtcc agtaattcat      2160
     cagccaccgg gacgcacast tgcctccagc cttttggaag cctctgatcc gcccatcaca      2220
     gtcgagtttt tcctgccagc gacctgcagc cgtcccggtc ctgtgtatgg ggtcttccga      2280
     atctcaaatg caggcaagtt tacagtctta ccgaatcatc catgccctga agtgttatca      2340
     gcttctagac catatccttc caatgtctta ctccgacctt cctttgcttg gatcccggga      2400
     cgcacgcctg accttagctt tatggaagcc tctaacccac ccaacacagt cgagcccttc      2460
     ccgccagcga tccacagccg tcccggtcct gtgtttggga tcgggggaga ggtcttccaa      2520
     aacacatcgg caggcaagta cttcacatca acgcacaata cctgctctga aacgtttata      2580
     acttccagaa ctcgtggcct gagtgtatct ggcctaggtt tcacgcctat tctcggatcc      2640
     atggaagcct ctcacccgcc gatcaaaatc cagtcttccc taccaacgtt caatagaggt      2700
     cccggtcttg tgttggggag caagggatca tctctagcaa gttttctcgt cgtgtcagat      2760
     cctcatcaac cagaacgcac tgcctgcagc attgaggaag tccctgagcc tctcgaccca      2820
     gtcgcgcctt ttgtatccag ccatcacagt cgttctggtc ctgtkgttga gtatggtgac      2880
     gggatcttcc gcccacctat agcaggcaag taccaaactc tatggaacaa ttcgttgcct      2940
     gatatgccat tacgttttag cgtgccacat ggatcaatcg attcactcaa caatatccga      3000
     gaacgtatca actgtacgag tcatcctctt ttgggaccaa tgtttgacgc atcccttcaa      3060
     ccagaacgca ctgcctgtag cacgaaggaa gtccccaaac ccctcggatc agtcgcgctc      3120
     gcaggttccg gccatcacag tcgttctggt cctgcagccg agtgtggtga cgggggcttc      3180
     cgccctttta cttcaggcaa gtccccttct gatggtaaca tttcaagtac tgacgcacgc      3240
     tcgtgtttta gcaagcatcm gactccgaac acactgcgca tatattacca aaatgttcgt      3300
     gggctccgga caaaaattga cgacttcttc ttggccgtca gcgaaaacga gtacgatatc      3360
     atcatcttga ctgaaacctg gctcaacgat gtaatatact ctgcacaact gttcggagat      3420
     cattatcgtg tgtatagaaa cgaccgcagc tccgtcaata gttgcaaatc tagaggagga      3480
     ggagtactta ttgccatctc ttcaaacttc aacagttttc gtgaacctgc cagcgtacat      3540
     gattccattg agcaattatg ggtgcgagtt gatatgcatc aagtcatagt gagcattggt      3600
     gtcctttacc tgccgcctga ccgcaaaaac aatctcaatg atattcgcaa tcatgttgac      3660
     tccatcggat cggtcatctc tcgccttggt ccaaacgatc tcgcccttca gttcggggat      3720
     tacaatcagt caacgatctc gtggacttcg tcggaaactg ggcctccatc gatagatctg      3780
     gatcggtcgt gcttatcagt tgccagtagt gctctgtttg atggtttcaa tctccatggt      3840
     ttaacacagt tcaacggaat taagaatact cgaggccggg tgcttgattt tgtactttta      3900
     aacgacgcag ctttgcccac gtgtactgtg agaagagctt tagaacctct tgtacctatt      3960
     gatgatagcc acccgccaat agaagttgat gtttgctgtt tggctccagt ctctttcgaa      4020
     cctgaatttg atgctacttg cctcgatttc cgcaaggctg actatactgt gttaaacgcc      4080
     gcgttgctct ctgttgactg gagtttcctc aactcagctg ataatgtcga cgatgctgta      4140
     gaatatttca ccaactctgt caatcgtatc gttgcatcgc atgtccctgt aatcagaccc      4200
     gctccgaaac caatatggtc taacaacaga ttgcgctcac tgaagcggcg tcgttctgca      4260
     gcgcttcgta ggtactgcaa tcaccgctct gcgtatctca agcaacagtt caacactatt      4320
     agtagagaat atagggaata taacaagctt tcgtacctac gttacaccac acgcactcaa      4380
     caaaatttgc gctcaaatcc gaagaagttt tgggcttttg ttagatcaaa gaggaaagaa      4440
     gatggactac ctacatcgat gttctacggg tctaacactg ctagttcagc tgcagaaaag      4500
     tgcgaacttt tcgctgccca attcagcgcg gctttcaacg actccgcagc aacaccctct      4560
     caagttgagg acgctgtaca tgacactccg atcgatgtac tgaacttcac cacctttcgg      4620
     atcgatgctg aaaatgtaac caaggcgata agaaagctga aatcctcgta ctccgctggg      4680
     ccagatggaa ttcccccggc gttgcttaag cggtgtcttc ctgctttaca tgaaccgctg      4740
     gcagtaattt acaatctgtc ctttcaacgc gagcagtttc cgtcacgttg gaaacattca      4800
     ttcctgtttc caatttacaa aaaaggggat aaacgagatg tgagcaatta ccgcgggata      4860
     acttcacttt ctgcttgttc gaaagttttt gaaattattg taaatgacgt gctgtttaat      4920
     tgttgcagtc attacatttc aattgatcag catggttttt ttcctaaacg atctgttaca      4980
     tctaatctcg ctcagttcgt ctcaacgtgt ctgcaagcaa tggacgacgg aaagcaggta      5040
     gacgctgtgt atcttgatct gaaggctgct ttcgatcggg ttgatcaccg aatactacta      5100
     aaaaaattgg aaaggattgg aatatcccaa gattgcatag aatggttccg atcatacctt      5160
     actggcagat cactgtgtgt taaaatagga tcctgtcact ccacacactt tcgcaatgta      5220
     tcaggagtac cgcaaggcag taatctcggt ccacttctat tttcaatctt cgtcaacgat      5280
     gtgtcgctaa tactaccacc tggagtaaag ctgttttatg cggacgatgc caaactatac      5340
     gttgttgtca actgtattga agactgtatc caattgcaga cactcttatg taagtttgag      5400
     cggtggtgtg tccataactg cctcacgtta agcatcgaaa aatgccaggt cattacgttt      5460
     agcaggaagc gcaaaccaat aacgttccaa tactcactct ccgacaaatt cctggagcgg      5520
     gtacaacgtg tacgagatct cggcgtcatt ttagatgaaa aactcacatt ccgttttcat      5580
     tatgatgata tcatatcacg ggcaaaccga cagctcggat ttattatgaa agttaccact      5640
     gattttcaag atccgctttg cttgaaagcg ctgtactgcg cacttgtgcg gtccatactt      5700
     gagtttgccg acgtcgtctg gtgtccgttt cagactacct ggatatcgcg cattgaatca      5760
     gtgcagcgaa agtttgtacg ctttgcacta aggactcttc catggcgtaa tgatcaacac      5820
     cttacctctt accacgatcg ctgtcagcta ctgggaattg acacgttaga gaatagacgt      5880
     cgaattgcac aggccatgta tgtagtgaag cttctaaatg gaaccataga ttcttcagca      5940
     ctcctggcca gaataaattt caatgcacct gaaagatccc ttcgaagaca cagtttcctc      6000
     cgattggaag gccgcaacag tcgttacgga cagcacgatc cgattcgctt catgtcgaac      6060
     acgttcaata gcgttgctca cctgtttgac ttcaacatgc ctgtctctgc agtacagcaa      6120
     cgattttcgt cgcatttccg cactaatcaa gccgaccagt aatttgtttt gtatgtgtac      6180
     taagttagtt ttgtgtttta cactgtagtt gtttattgtt ttagttcatt cgtgtttact      6240
     ccaatgcaga ttttttttat atacttcatt aagacataag tcagatggag attgttatta      6300
     ttaataataa ataataataa ataaataaat aaa                                   6333
//
ID   CR1_Ele24   repbase;    DNA;    INV; 5131 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele24.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5131
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5131
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 20 sequences with >91% identity, and ~98% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           354..1184
FT                 /product="CR1_Ele24_1p"
FT                 /translation="MDSKCYHCAKQVKTIEFLQCGLCNQAVHIKCVGLKRQ
FT                 DMEFVNEHKNVIWFCDKCIDQLQHVKDNPIKSTADVVSEISDSIKVSLDEL
FT                 KTELRETKELTKSLAEKKQPVESSGFYRNRPWPSIKRTREAATRDTPKSRP
FT                 DVKLLSGTKSVEADNIIVETIAKPAEKFWIYLSRIARHVTEADISELVKTC
FT                 LQIKDEVVVRKLVRKDADLKQFAFISFKVGINKDLRDTALDPSIWPKGILF
FT                 REFENLQSERDFWGPTKVPRIDDRTPAMETSPNLLQ"
FT   CDS           1088..5062
FT                 /product="CR1_Ele24_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="EPAIRTGFLGTYESSQNRRQDPSDGNLSKSTAINSHS
FT                 SLLTTERMSKSTMDAPKPPDTVEPCRCSSIAACSSRQSRSVPVFGTGDGAI
FT                 HLACPGKYYDISSFSFPKSPPACRNSSRRYRTSPTSPFNSRAACSHPQGTE
FT                 LDRRAEHNPRCSVDGFFETCSSSQTAMSAEHTRLVSVTSNSGLILKQPDDA
FT                 SSTPGRTVAGIMEGLHPPSTVAPQQPPLISRPGPVSGTGGGLFRAVNTGKF
FT                 DLSVCRSILDPFTSFSMPFAPQRSSSSIGRILGRTTSSNMEAPEPPTAVQL
FT                 FQPTTDSRPSPVRGCGEGVFQLTVNGKYAPSSNNSLADVVAASSSSSSEQR
FT                 RPSTSRGRFQAPSRETNASGPVLATNPSPIVKLPTSVYYQNVRGLRTKTAK
FT                 LRLALSSCDYDILAFTETWLRPDISNAEFSSGYTIFRCDRSALSSNFLRGG
FT                 GVLIAVKKSFQCELVICTGCEHIEQITVRIKLQGCWLIICTIYLPPNSGPD
FT                 LYSACSSVIQQITESMSESDIFLLLGDFNLPNLRWQLDEDFNGYLPSNAST
FT                 EQELALVEATIANGLQQMNNIVNANGNLLDLIFVNLPEHLDLVEPPLPLLA
FT                 VDTHHMPFVVLLSTNFPDVSDDQSEDIGFNFLRCNFDVLNAALSSISWEIH
FT                 PDSSVDYALTTFYNKLKQVILEYVPRKHRATNSVYNKPWWTTELRNLRNVL
FT                 RKSRTRYFSSRSAANKSHLRDVEIRYNTLLLATHNDYIARIQSYAKHNPSS
FT                 FWNFIKRQRSNNCIPANVEYSGHSASTNSEAADLFAAFFESVFTRVSPVPR
FT                 HDRFQNIPSFDISIPLPQFSIEEVSQALNDLDVKKGSGDDNLPPLLFKRCA
FT                 STLAGPITDVFNRSLAERKFPCAWKNAIIVPIHKSGSRNRVENYRGITLLC
FT                 CLSKVLEKLMYNILYNAALPIISNSQHGFMRNRSTTTNLMCYVTALSREVE
FT                 AKQQVDSIYIDFAKAFDTVPHLLTVEKMSHLGFPGWTTQWLFSYLSNRTAY
FT                 VTVNSASSSAFEITSGVPQGSVLGPLIFIIFVNDLYQLLSSCNLSFADDLK
FT                 LYRVIRSALDCIAMQADVDAIIVWCSDNGMRINSNKCKVISFTRRNHQYRH
FT                 EYTAGSAVIERVQSICDLGVTIDSKIRFNEHVAIITAKAWSALGFVRRHAS
FT                 DFTDIYALKSLFCALVRSILEYAAPVWSPYHVTQTLRIERVQKKFVHFALR
FT                 HLPWIDPTNLPHYPDRCRLINLETLSARRTQLQQLFIFDTICGNLDCPTLL
FT                 GEVSFNVPPRRFRSSSFLTIPYHRTAYGQNNSFSLCVKAFNDVSDRFDFNL
FT                 SKVMFKTRIKNLG"
XX
SQ   Sequence 5131 BP; 1356 A; 1343 C; 1086 G; 1344 T; 2 other;
     gtttgcggac ctctgcttcg tactgtagtc gcgttatcat cgctattgtt ttgatgtgta        60
     aawtccccta gtgckgtttc gaaacaaatc gtgaagcgta cttttctcta gttgtttata       120
     ctccatctgc tagttcaact acctgcgagt ggatgtttct cgtgtaaagt gcttatttag       180
     tgccaaaaac tatatcgcta gtgaatcgtt tgtcctaaat aaagtgttga tcttctcctc       240
     acgtgacgtc atcatcatct gaattgaatc cagcgccatc tattggtcgg tgacacatat       300
     ccagcaaagc tttcttttcg gatcccgtcc ctctatcatc taacaccagc agtatggatt       360
     caaaatgtta tcattgcgcc aagcaggtga aaacaatcga gtttttacaa tgcggtcttt       420
     gcaaccaagc agttcacatc aaatgcgtcg gtctcaaaag gcaggatatg gaatttgtga       480
     acgagcacaa aaatgtgata tggttctgcg acaaatgcat tgatcagctg caacatgtaa       540
     aggacaatcc cataaagtcg actgctgatg tcgtcagtga aatttccgat tcaatcaagg       600
     tctcactaga cgaattgaag actgaacttc gtgaaaccaa ggaactaacc aagtcacttg       660
     ctgagaagaa acaacctgtt gaatcttctg ggttctatcg aaaccgacca tggccaagta       720
     taaaacgaac tcgtgaggct gctacacggg atacaccaaa atctcgtcca gatgtcaagc       780
     tgctcagcgg cacgaagtca gttgaggcgg ataatattat tgtcgagacc attgcgaaac       840
     cagctgagaa attctggata tacttgtcta ggattgctcg acatgtaacc gaagcggata       900
     tttcagagct agtcaaaacc tgtctacaga tcaaagacga ggttgttgtt cgaaagctcg       960
     tgcgcaagga cgccgatttg aaacaatttg cgttcatctc gttcaaagtt ggcattaaca      1020
     aagacctgag agatactgct ctggatccat ccatctggcc aaagggtatt ttatttagag      1080
     aatttgagaa cctgcaatcc gaacgggatt tttggggacc tacgaaagtt cccagaatcg      1140
     acgacaggac cccagcgatg gaaacctctc caaatctact gcaataaatt cacactccag      1200
     tttgctaaca acggaacgca tgtcaaaaag cacgatggat gcccctaagc cacccgacac      1260
     agtcgagccc tgcagatgtt ccagtattgc tgcttgttcc agccgtcaaa gtcgttccgt      1320
     tcctgtgttc gggaccggcg acggggctat ccaccttgct tgtccaggca agtattatga      1380
     cattagttct ttttcgttcc ctaaatcccc tcccgcttgc agaaattcct cacgcagata      1440
     tagaacgagc ccaacaagtc ccttcaacag tcgtgcagca tgcagccacc cacagggtac      1500
     tgaacttgat agaagagctg agcacaatcc gcgatgcagc gtagacggct tctttgagac      1560
     ctgttcatcc agccagactg caatgagtgc cgaacacaca cgactagtgt cagtcacatc      1620
     caattctggc cttatcctca aacaaccgga cgatgcctca tcgacaccgg gacgcactgt      1680
     agctggtatt atggaaggcc ttcacccacc cagcacagtc gcgcctcagc agccaccgct      1740
     catcagtcgt cccggccctg tgtctgggac tgggggaggg ctcttccgag ccgttaacac      1800
     aggcaagttt gatttaagcg tatgccgttc gattcttgat ccgttcacca gtttcagcat      1860
     gccatttgct ccacaacggt cttcatcttc aatcggccgt atactgggac gcacaacatc      1920
     cagtaacatg gaagccccag aaccccccac agcagtccag cttttccagc caacgaccga      1980
     cagtcgtccc agtcctgtac gtgggtgtgg tgaaggggtc ttccaactca cagttaatgg      2040
     caagtatgct ccctcatcga acaattcact cgctgatgtt gttgccgctt ctagctcatc      2100
     gtcatccgag cagcgtcggc cctctacatc gcgaggtcgg tttcaagcac cctcacgcga      2160
     aacgaacgcg tctgggccag tcctagcaac gaatccatcc ccgatagtga agcttcctac      2220
     gtcagtctac tatcaaaacg tcaggggtct acgcaccaag actgctaagc tgcgtttggc      2280
     actatcaagc tgtgactacg acatcctcgc cttcaccgaa acatggctta gaccggacat      2340
     cagtaacgct gagttttcat ctggttacac catattccgt tgcgaccgca gtgcattatc      2400
     cagtaatttt cttcgaggtg gaggagttct tatcgccgtc aagaaatcat tccagtgcga      2460
     gctggtaata tgcactggtt gcgagcatat cgagcagatt actgttcgca taaaactgca      2520
     aggttgttgg ctgatcatct gtacaatata ccttccgcca aattctggac ctgatctgta      2580
     ctccgcttgc tcatcagtca ttcagcaaat tacggagtcc atgtcggagt cagatatttt      2640
     cctgctgcta ggcgatttca atcttccaaa tctccgctgg caattggacg aagatttcaa      2700
     cggctacctt ccttcaaacg cttccactga gcaagagctg gcactcgtcg aggccactat      2760
     tgcaaacggt ctccagcaga tgaacaacat cgtgaacgcc aacggtaatc tactagatct      2820
     aatctttgtt aatttaccgg agcacctcga tctagtcgag ccaccactcc cacttttagc      2880
     agtggacaca catcatatgc cattcgtcgt gcttctcagc acaaactttc ccgatgtctc      2940
     tgacgaccaa tctgaagaca ttggctttaa cttcctgcgc tgcaacttcg acgttttaaa      3000
     tgctgctcta tcctctatca gctgggagat ccatccagac agttcggtgg attacgctct      3060
     cacgacattc tacaacaaac taaagcaggt aatcctagaa tatgttcctc gtaagcatcg      3120
     cgctactaac tccgtctaca ataagccatg gtggaccaca gagctacgaa accttcgcaa      3180
     tgtcctccga aagagcagga ccagatactt ctcgtccaga tctgctgcca acaaaagtca      3240
     tctccgtgat gtagagatcc gttacaacac gctgcttctt gccacccaca atgactatat      3300
     cgctcgaatc caatcctacg caaaacataa cccctcgtcc ttctggaact tcatcaaacg      3360
     ccagcgctct aacaactgca ttcctgcaaa cgtagagtat tcaggacatt cagccagcac      3420
     aaattctgaa gcagccgact tgttcgcagc gttctttgaa agcgtcttta ctcgagtctc      3480
     tccggtgccc cgccatgaca gattccagaa cataccctcg ttcgacatta gcatcccatt      3540
     acctcaattt tcaatagaag aagtttcgca ggccttgaac gacctcgacg tcaagaaggg      3600
     ttctggagac gacaatcttc ccccgttgtt gtttaaacga tgcgcgtcca cactcgcagg      3660
     tccaatcacg gatgtcttca atcgatctct cgccgagagg aaatttcctt gcgcgtggaa      3720
     aaatgctatt attgtaccaa tccacaaatc tggcagccgt aaccgtgttg aaaactaccg      3780
     aggtatcacg ctgttatgct gcttgagtaa ggtgctcgag aagctcatgt acaacatcct      3840
     gtacaacgcc gcattgccga tcatatcgaa tagtcagcac gggttcatga ggaatagatc      3900
     gactacaacg aacctcatgt gttatgtcac cgcattatct cgcgaggtgg aagcgaaaca      3960
     gcaggtagat tcaatctaca tagattttgc gaaggctttc gacactgtac cgcatctttt      4020
     aaccgtcgaa aagatgtcgc acctcggatt tccaggatgg acaactcaat ggctgttttc      4080
     gtatctctcc aatcgaacgg catacgtgac cgtcaactcc gcaagctcta gcgcgttcga      4140
     aataacttcg ggagtaccgc aaggaagcgt cctcggcccg ctgatcttca taatttttgt      4200
     gaacgatctg tatcagctgc tctcgtcttg caatttatcc ttcgcagacg atcttaagct      4260
     atatcgggta attcgctctg ctttggactg catagctatg caagcggatg tcgacgccat      4320
     tattgtgtgg tgcagtgaca acggaatgcg aatcaatagc aacaaatgca aagtgatatc      4380
     tttcactcgc cgcaatcatc aatacaggca tgaatatacc gcagggtctg ccgtaattga      4440
     acgcgttcaa tcaatctgcg atctcggagt tacaatcgac tcaaaaatca gatttaacga      4500
     acacgtcgca attatcactg ctaaggcttg gtcagcgttg ggattcgtta gacgacacgc      4560
     ctcggacttc accgacatct acgcgctgaa atccctattt tgtgcactag tccggagcat      4620
     actagagtac gcagctcccg tgtggtcacc ataccatgtg acgcaaacgt tgaggattga      4680
     acgtgttcag aagaaatttg tgcattttgc attgcgccac ctaccgtgga ttgatcctac      4740
     aaatcttcct cattacccag accgctgccg actcatcaat ttggaaactc tgtcggcaag      4800
     gaggacccag ctgcagcaat tgtttatctt tgacaccata tgtggcaacc tcgactgtcc      4860
     tactcttctc ggtgaagtct ctttcaacgt tcctccacgg cgattccgta gttcctcttt      4920
     cttgacaatt ccttatcaca ggactgctta tggtcaaaat aactctttta gtttgtgtgt      4980
     taaagctttt aatgacgtta gtgatcggtt tgattttaat ttgtcgaaag tgatgttcaa      5040
     aactaggatt aaaaatttag gttaatcaaa ttttaattaa ctttaagaca gtctgtacgt      5100
     cgtagacgaa gacggtggaa tataataata a                                     5131
//
ID   CR1_Ele25   repbase;    DNA;    INV; 5444 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele25.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5444
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5444
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 12 sequences with >98% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           320..1234
FT                 /product="CR1_Ele25_1p"
FT                 /translation="MRGGLDQTISSVTVEKCFASNMSLVCCSCAGDIGEIQ
FT                 VECQGFCKAIFHPRCCGVAAEVFEQVMRNNQLFWFCPSCTALMKDMRLRNT
FT                 ARAAYEVGQGHALNSHSDIMANLKTEIMDELKAEIRNNFAKLVNSNSFTPK
FT                 SSRRVGIDPRFTRSRRLFSTAANPIPNNQPPLLLGTGSTPSPSIEIATVPP
FT                 PQPKFWLYLSRIAKDVSVDQIRALAKKRLGSDDVQVVRLVARGRNIDTMSF
FT                 ISFKIGVNLDLKPKALSTSTWPKGIVYREFTDNNKNENFWRPEPVAATDDP
FT                 LSFASEEEVVLME"
FT   CDS           1084..5382
FT                 /product="CR1_Ele25_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GFVHFNVAKRNCLQGIHRQQQKRKFLASGTCGCNRRS
FT                 TELRIRRRSGFNGVKDNEYNSCFIPGRTLAPSLEEAPIPFTAVEPLLPATS
FT                 SRPGPASELEDGVFRNPPSGKYLYLLRTSPAVPFVAFSPSSSSQMSSFHQP
FT                 TSHNRTPGRRFAASLKEASIPLTAVEPLPPATSSRPGPACELEDEVFRNPI
FT                 SGKYADILSTSPAVPYVASSTTSPIRVYSTSSFWNPGRILAASLKEASNPL
FT                 TAVEPLPPATSSRPGPACEQGNEVFRNPAAGKYIDILRTSSAVPYVDSSLP
FT                 SNIQASSTSSNRTPGRNLAASRKEASIPLTAVEPLPPATSSRPGPACEQGN
FT                 EVFRNLSTGKYDLIPRTSPAVSLVVSRSRIPKDALTNSRLYDQWRISEGDS
FT                 QLAQAGPSRNATWLSIPMPIPERTDTSSMEASYPTTVEKTGSSICRRPSLG
FT                 CGVEDGVFQAATIGNASSDARDRIAYFNTSSLPDSRSLCVYYQNVRGLRTK
FT                 THDLKLRLSSCDYDIVVLTETWLRPDISNSELSSDYTIFRCDRNKTTSNLS
FT                 RGGGVLVAVKGDLQCTEVSLSDCADLEQVAVCVKLPNQTLNIFGIYLRPNS
FT                 EPSLYSTHSAAVQRVSDSTSNNDVILVFGDYNLPHLQWSFDEDVNGYLPTN
FT                 ASSEQEVSLTESIMACGLVQINSFTNRSHRILDLVFTNFSDISELSQPVLP
FT                 LLPIDDHHPPLVLQIDVCFSAPSQLDPDPNILGLDFRRCNFSSLNNLLDSV
FT                 DWDNQLLGHSVDESVGLFYDKMYEILRSVIPRRRCVNLGVDRKPWWNPELR
FT                 NMRNRLRKVRKRYFASKTVENRNLLCLVESSYNELIDMSYRRYLENLQLTA
FT                 KNNPSKFWKHMKAQKASHGIPNNVTYGDINATTHVEAAELFAKFFQSVYSA
FT                 TSPRVYPGCFQNVRTHNIHIPPFQFSHQEVLNALLSLDTTKGAGVDGLTPH
FT                 LLKSCASSLVAPLTLLFNRSLNENTFPQLWKIATMVPVYKSGSIRLVENYR
FT                 GISILCCLGKMLESMVHKVVMSASISIISQYQHGFIPHRSTTSNLLCYTNV
FT                 LFREIERRKQVDSIYVDFSKAFDTVPHLYAVEKLRHMGFPDWISDWILSYL
FT                 TDRKAFVKVNSSRSSTFSIPSGVPQGSVLGPLIFVLYINDLCHRFSSGRLC
FT                 FADDLKIFRVINSTLDCVALQDDIDSLLQWCIENGMTLNIGKCKVITFCRS
FT                 LSSINYTYAINGTTLERVGSIRDLGVVIDSKLRFNEHITVITAKAFSVLGF
FT                 IRRNASQFTDVYALKALFCALVRSVLEYAAPVWAPYHTSLMIRIERVQKSF
FT                 IRFALRRLPWNDPINLPDYPARCQLVDLELLSNRRLKLQRLLVHDILTNNI
FT                 DCPDLLSEVQLSVPNRRLRHTTLIAIPLHRTSYGYHDPFTTCLRNFNSVCE
FT                 MFDFNVSKDCFRARIKNIV"
XX
SQ   Sequence 5444 BP; 1421 A; 1359 C; 1153 G; 1511 T; 0 other;
     cgttatgacg taaacattgt tcgcatctag ctttttcgct tggagcaata atttatttta        60
     tacatgttaa atttacctgt ttccgctgtg ttatatatcg cggtttagtg tttcgtacag       120
     tgcatctcct agtagtgaat gatttacgta accacagaaa acgattgaga atttttagtt       180
     ttgattttct acaatcccgc ggtgcaatac aatttgcttt gtttttgttt gtgttctcat       240
     tgcacttcgt caaggcaacc gtacttcgtg accgtagcgt acactgctaa aaagactcgc       300
     ggagtggcat agtttttcga tgcgtggtgg tcttgaccaa acaatttcaa gcgtaacagt       360
     tgaaaagtgc ttcgcaagca atatgtcact tgtttgctgt tcctgcgccg gtgatatcgg       420
     agaaattcaa gtcgagtgcc aaggcttttg caaagcgatt tttcatcctc gatgctgtgg       480
     agtggctgcc gaagttttcg aacaggttat gagaaataat caattgtttt ggttctgccc       540
     gtcgtgtaca gcacttatga aagatatgcg cctccgtaac actgcacgtg ccgcttatga       600
     ggtgggccaa ggacatgcgc tcaactccca tagcgacatt atggcgaacc taaaaaccga       660
     aattatggat gaattgaagg ccgaaattcg aaataatttt gctaagctgg ttaactcgaa       720
     ttcgtttacc ccaaagtcct ccagacgtgt tggcattgac ccaaggttca ccaggagcag       780
     gaggctgttt agcacggccg ccaatccaat cccgaataac cagccgcctc tattacttgg       840
     aactggcagc acaccctctc cgtcaattga aatcgctacc gttccgccgc ctcaaccgaa       900
     attctggtta tatctatctc ggatcgcaaa ggatgtatca gttgaccaaa tacgtgcttt       960
     agcaaaaaaa cgcctcggtt ctgatgacgt gcaagttgtt cggcttgtgg ctagaggaag      1020
     gaacatagat acaatgtcct ttatctcgtt caaaattggc gtgaacttgg atttgaaacc      1080
     taaggctttg tccacttcaa cgtggccaaa aggaattgtc tacagggaat tcaccgacaa      1140
     caacaaaaac gaaaattttt ggcgtccgga acctgtggct gcaaccgacg atccactgag      1200
     cttcgcatca gaagaagaag tggttttaat ggagtaaaag ataacgagta taattcctgt      1260
     ttcatcccgg gacgcacact tgcccccagc cttgaggaag ctcctattcc tttcaccgca      1320
     gtcgagcccc tcctgccagc gaccagcagt cgtcccggtc ctgcgagtga actggaagat      1380
     ggggtcttcc gaaatccacc ctcaggcaag tatctttacc ttttgagaac ttcgcccgct      1440
     gtaccattcg tcgctttcag cccatcttca tcaagccaaa tgtcatcatt ccatcaacca      1500
     acgtctcata accggacacc gggacgcaga tttgccgcaa gccttaagga agcctctatt      1560
     ccactcaccg cagtcgagcc tctcccgcca gcgaccagca gccgtcccgg tcctgcgtgt      1620
     gaactggaag atgaggtctt ccgaaaccca atctcaggca agtacgctga tattttgagc      1680
     acttctcccg ctgtaccata cgtcgcttcc agcactacgt caccaatacg agtttattcg      1740
     acatcttcat tttggaatcc gggacgcatt cttgccgcca gtcttaagga agcctctaat      1800
     cctctcaccg cagtcgagcc cctcccgcca gcgaccagca gtcgtcccgg tcctgcgtgt      1860
     gaacagggaa acgaggtctt ccgaaatcct gctgcaggca agtacatcga cattttaaga      1920
     acttcttccg ctgtaccata cgttgattcc agcctaccgt cgaatatcca agcttcttcg      1980
     acatcatcaa atcggactcc gggacgcaat cttgccgcaa gtcgtaagga agcctctatt      2040
     cctctcaccg cagtcgagcc cctcccgcca gcgaccagca gtcgtcccgg ccctgcgtgt      2100
     gaacagggaa acgaggtctt ccgaaatctg tctacaggca agtacgatct tatccctaga      2160
     acttcccccg ccgtatcgct cgttgtttcc agaagccgca ttccgaagga tgcactcact      2220
     aactcgcgcc tgtatgatca atggaggata tcagaaggcg attctcagtt agcgcaagca      2280
     ggcccctcac ggaatgctac gtggctctcg attccgatgc cgataccgga acgcaccgat      2340
     accagctcaa tggaagcctc ttatcctacc accgtcgaga aaactgggtc atcgatctgc      2400
     agacgtccta gtcttgggtg cggagtcgaa gacggggtct tccaagccgc cacaatcggg      2460
     aatgcctcat ccgacgcgcg tgaccgaatc gcttatttca acacctcatc attgcctgac      2520
     agtcggtccc tctgcgttta ctaccaaaac gtcagaggtc tacgtactaa gacacacgat      2580
     ttaaaattgc ggttgtcaag ttgtgactac gacattgttg ttctcacaga aacgtggctt      2640
     cggcctgata taagtaactc ggaactgtca tctgattaca caatctttcg ttgtgaccgc      2700
     aataagacta caagcaattt atcaagaggt ggtggggtgc ttgtcgcagt caaaggcgat      2760
     ttgcagtgta cagaagtgtc attgtccgat tgtgctgacc ttgagcaagt ggcagtatgt      2820
     gtgaagcttc ctaaccaaac gttgaatatc ttcggaattt acctccgtcc aaattccgaa      2880
     ccaagtttgt attctactca ttctgctgcc gttcagcgcg tatccgactc aacgtcaaac      2940
     aacgatgtga tcttggtgtt tggtgactac aatcttcctc atctacagtg gagctttgat      3000
     gaagatgtaa atggttacct gcctacaaat gcgtccagcg aacaagaagt ttctttgaca      3060
     gaatcaatca tggcctgtgg gctggtgcag attaactcct tcacaaaccg gagtcatcga      3120
     attcttgatt tagtttttac aaacttctcg gacatatccg aattatcgca gccagtttta      3180
     ccgctgctgc caattgatga ccatcatccg ccgcttgttt tacaaattga tgtttgcttt      3240
     tccgcaccca gtcagcttga cccagacccg aatatcttgg gcctcgattt ccgacgatgt      3300
     aacttttcct cgctcaataa cttactggat tcggttgatt gggataatca actacttgga      3360
     cactccgttg atgaaagtgt cggcttgttt tacgacaaaa tgtacgaaat actccgctca      3420
     gtcatccctc gtcgccgatg cgttaatctt ggtgttgata gaaaaccgtg gtggaatcca      3480
     gaattgagaa acatgcgcaa cagactgaga aaagttcgta aacgatattt tgctagcaaa      3540
     acggttgaaa acaggaatct gctttgccta gtggaatcct cttataatga gcttatcgat      3600
     atgagctatc gcaggtatct tgagaatttg cagcttaccg ccaaaaacaa cccctcgaag      3660
     ttctggaagc atatgaaggc acaaaaagca agccatggta tcccgaacaa cgttacttac      3720
     ggggacatta atgccaccac acatgttgaa gccgctgaac tatttgcgaa atttttccaa      3780
     agcgtgtaca gtgccacatc gcctcgtgtc tacccgggat gcttccaaaa cgtacgaact      3840
     cacaacattc atatcccgcc tttccagttt tctcatcaag aagtattgaa tgccctactt      3900
     agcttagata caacaaaagg tgctggggta gatggcttga ctccccatct gttgaaaagc      3960
     tgtgcttcgt ctttggttgc accgttgacc ttacttttca atcgatcact caatgagaac      4020
     acgtttcctc aattatggaa aattgctaca atggttccgg tttacaaatc tggcagcatt      4080
     cgtcttgtgg aaaactaccg aggaatctca attctctgct gcctcggaaa aatgctggaa      4140
     tctatggtac ataaagttgt aatgtctgca tcaatatcga ttatttctca gtaccaacat      4200
     ggattcattc ctcaccgctc gacaacttcc aacctcttat gttacactaa tgtactgttt      4260
     cgtgagatcg aacggcggaa gcaagtagac tcaatatacg tggacttctc caaggcgttt      4320
     gacactgttc cgcatttgta cgctgttgaa aagctgagac atatgggttt tcccgattgg      4380
     atatctgact ggattttgtc ctatctcact gatagaaaag ctttcgttaa agtaaactct      4440
     tcgcgatcca gtaccttcag cattccttcc ggtgtgccac aaggcagtgt attgggacca      4500
     ctgatttttg tactctacat taacgacctg tgtcatcgat tttcatctgg gagactatgc      4560
     tttgctgacg acctcaaaat tttccgagtg atcaactcta ctctcgactg cgttgcttta      4620
     caagacgaca ttgactcgct tcttcaatgg tgtatcgaaa acggaatgac gctcaatatt      4680
     ggaaagtgta aagtcataac attttgccgc agcttgtctt cgatcaacta cacatacgct      4740
     ataaatggaa caactctgga gcgtgttggg tcaattcgcg atctaggagt ggtaatagac      4800
     tcaaaattgc gctttaacga gcatattaca gttatcaccg ccaaagcctt ttcagtcctt      4860
     gggtttatcc gaagaaatgc atcgcagttc accgatgtgt acgctttaaa agctttgttc      4920
     tgtgcccttg tgcgcagtgt tttagagtat gctgctcctg tatgggctcc ataccacaca      4980
     tccctaatga ttcggataga acgagtacaa aaatcattta tccgttttgc tcttcgccgc      5040
     ctaccttgga acgatccaat caacctaccg gactatcccg cacgttgtca gctagtggat      5100
     ctggagctac tttcaaacag aaggctaaag cttcaaagac tacttgtaca cgatatcctg      5160
     acgaataaca tcgactgccc tgatcttctt tccgaagtgc aactaagcgt tcccaatcgt      5220
     agactgcggc atacaaccct catcgccatc cctttacata gaacgagtta cggatatcat      5280
     gaccctttta ccacttgttt gaggaatttt aactctgttt gtgaaatgtt tgattttaat      5340
     gtgtcaaaag attgttttag agctaggatt aagaatatag tttaattaat tagtctgtac      5400
     ggtagtatta ccgaagacgt ttacacaata aataaataaa taaa                       5444
//
ID   CR1_Ele26   repbase;    DNA;    INV; 3382 BP.
XX
AC   .
XX
DT   26-OCT-2010 (Rel. 15.10, Created)
DT   26-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele26.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3382
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3382
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (26-OCT-2010).
XX
DR   [1] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >94% identity, and ~98% identical to the original
CC   sequence in [1]. Likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..3278
FT                 /product="CR1_Ele26_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRPTFSPHSGRTASSTMEAPTPPSTVEFLQPAFFSRP
FT                 DPVVGCGEGVFQPVQSGKYVENADCLLPDISTPSSLRIYYQNVRGLRTKID
FT                 SLFLAVSDLDYDVIVLCETWLDDRILSSQLFGNLYSVFRTDRSALNSDKRS
FT                 GGGVLIAVSSRLSCSLDSAVISNELEQLWVKIVLPRNNVSIGVMYLPPDKK
FT                 NDIGVIHRHIDSIGAVQSLLQENDMALQFGDYNLSNVFWSSNXDDNVSIDL
FT                 TRSRLNPASSTLLDGFCFHGLSQVNTLVNGGDRTLDLVLVNDVVMQNFSLF
FT                 EAIEALTVIDIHHPPIELVVSCPLPVTYEALFDHTGFDYKKANFESLNSAL
FT                 YLIDWSHLDCIDDVNESVAFFTNSVMQVVAEHVPLRRPPSKPPWSNNRLRF
FT                 LKRRRSAALRLYRSHRSQESKLHFNRSSSEYRSYNAYLYARYKRRTEQNLR
FT                 TNPKQFWSFVNAKRNEDGLPTSMYLGDLSADSASDKCELFAMQFRRAFNDS
FT                 ISQQNQADHALQDTPHDVFSYEMFYVTEQEVTRAISKLKLSYNPGPDGIPP
FT                 ALLKRCSATLLRPLTKLLNQSLRLQQFPACWKKSFLFPVHKKGDKRCVSNY
FT                 RGITSLCACSKVFEIIINDSLFDCCKNYISTDQHGFFPRRSVESNLVEFTT
FT                 LCIKAIDAGKQVDAVYLDLKAAFDRVDHRILXQKLRKCGVSTGFSNWFDSY
FT                 LTDRSLCVKIGSCESASFTNISGVPQGSNLGPLLFSLFINDASLILPPGTR
FT                 LFYADDAKVYMIVNGLNDCIRLQSLLDSFEAWCVRNFLTLSIEKCQVISYG
FT                 RKRNPIRFPYKLSGTTLERVQRVRDLGVVLDEELTFNYHYDDAISRANRQL
FT                 GFVLKVXDGFRDPLCLKSLYCALVRPILEFAAVVWCPFHASWITRIESVQR
FT                 KFVRRALRNLPWRDPRNLPPYHDRCRLIGIXTLENRRHVAQTAFVSKLLKG
FT                 EIDSPSLLADVNVYAPERTLRRRHFISLGSRSTLYGQHDPVRFMTAKFNEV
FT                 FHLFDFNVSITTLRNRFVQYFGRN"
XX
SQ   Sequence 3382 BP; 875 A; 793 C; 722 G; 984 T; 8 other;
     gttctggcga gggggtcttc caccgtttac actcaggcaa gtaccttcaa gttgattgtg        60
     attcctgcac tgaagttgtc tcgtttgata gcgcttatga tgttgacctt tcggcttcaa       120
     acgaacttcg cacgtgcaat cgacctccac aaacaacgcc ctcggtgctc tgkgatcatc       180
     cttcgaacat gcgaccaacg ttttctcctc actcgggacg cacagcatct agcacaatgg       240
     aagccccaac gcccccctcg acagtcgagt ttctccagcc agcgttcttc agccgtcccg       300
     atcctgttgt agggtgtggt gaaggggtct tccagcctgt gcaatcaggc aagtacgttg       360
     aaaatgctga ctgtttactt cctgacatct ctacaccttc cagtctacgc atctactacc       420
     agaatgttcg tggtttgcgt acaaaaatcg actcactttt ccttgctgtc agcgatttgg       480
     actatgacgt catcgtactc tgtgagacct ggttagatga tcgcatccta tcatcacagt       540
     tattcggaaa cctctactca gtgttcagaa cggatcgaag tgctctgaat agtgacaaaa       600
     gaagtggggg aggtgtgtta atagctgtat catcgcgatt aagctgctct ttggattctg       660
     cagtcattag taacgagctt gaacagctct gggtgaaaat cgttttgcct cgtaataatg       720
     tgagcatagg agtgatgtat ctaccgcctg ataagaaaaa cgacattggc gtcattcatc       780
     gccacattga ctctatcgga gccgttcaaa gtcttcttca agaaaacgat atggcactgc       840
     agttcggcga ttacaatctg tcgaatgtgt tttggtcktc gaatgsggac gacaatgttt       900
     ccatcgatct aactcgctca cgcctgaatc ccgccagttc tactcttttg gatggcttct       960
     gctttcacgg tctctcgcag gtaaacacat tagttaatgg aggtgatcgt actctcgacc      1020
     ttgttctcgt taatgacgtc gttatgcaaa atttttcatt gtttgaagca atagaagctc      1080
     ttacggtaat cgacattcat caccctccga ttgaattagt tgtttcatgt ccactacccg      1140
     taacctatga agcattattc gaccatactg gatttgacta caagaaagca aacttcgagt      1200
     cactgaattc tgccctgtac ttaattgact ggagccatct cgattgcata gatgatgtta      1260
     acgaatctgt tgcatttttc accaactccg tgatgcaagt agttgcagaa catgttccgc      1320
     tacgcaggcc gcctagcaaa ccgccatggt caaacaatcg gttgcgtttt cttaagcgcc      1380
     gccgctctgc tgccctccga ttgtatcgtt ctcaccgttc acaagaatcg aaactgcact      1440
     tcaaccgatc cagcagcgag tacaggagct ataatgcata cctgtatgct cgctataagc      1500
     gtcgaactga gcagaatctc cgaacaaatc caaaacagtt ttggtcattc gtcaacgcca      1560
     aacgaaatga ggatggactt ccaacatcaa tgtaccttgg cgatttgtct gctgattctg      1620
     ctagtgataa atgtgagcta tttgctatgc aattcaggcg cgccttcaat gacagtatct      1680
     ctcaacaaaa tcaagccgat catgccttac aagacacccc tcatgacgtc tttagttacg      1740
     aaatgttcta cgtaacagaa caggaagtaa ctagagcaat ttcaaagctt aagctttcgt      1800
     ataatcctgg accggatggt ataccacctg cgctgctgaa gagatgttcc gctacactcc      1860
     tgcgtccttt aactaagctt ctgaatcaat cacttcgact acaacagttt cctgcatgct      1920
     ggaaaaaatc ttttcttttc ccggttcaca agaagggtga caaacgatgt gtgagcaact      1980
     accgtggaat aacttcgtta tgcgcttgtt caaaagtatt cgaaataatt attaatgatt      2040
     ccttgttcga ttgctgcaaa aattatatct ccaccgatca acatggattt tttccgagaa      2100
     ggtccgtcga gtcaaatctc gttgaattca cgacgctttg cattaaagcc attgacgccg      2160
     gcaaacaagt agacgctgtt tatttggacc tcaaagcggc atttgaccgt gtcgatcatc      2220
     gaatacttst ccagaaactt agaaaatgcg gagtttccac cggtttcagc aattggttcg      2280
     attcttatct tacggatcga tcgctctgtg taaagatagg ctcatgcgaa tcagcatcgt      2340
     ttacgaatat ctctggagta ccacaaggca gcaaccttgg acccttgttg ttctctttgt      2400
     tcatcaatga tgcatcactg attttgccac ccggaaccag gcttttctat gcggacgatg      2460
     ctaaagtcta tatgatcgtg aatggcttga atgactgtat tagactgcag agtttgttgg      2520
     actcattcga agcatggtgt gttagaaact tcctaacgct gagcattgag aagtgtcagg      2580
     tcatctcgta cggtagaaag cgtaacccaa tcagatttcc gtacaagctt tcagggacga      2640
     cacttgaacg tgtgcaacgg gttcgtgact taggtgtcgt tctagacgag gaactaacct      2700
     ttaactacca ctatgacgat gccatctcca gagcaaatag acaactcggt tttgtgttga      2760
     aggtgtstga tgggttcagg gacccgctct gcctaaagtc gttgtactgt gctctagtac      2820
     gtcctatttt ggaatttgct gcagttgtgt ggtgtccttt tcacgctagc tggatcacgc      2880
     gaatcgaatc tgtccaaagg aaatttgtac gccgagctct cagaaacctg ccatggcgcg      2940
     atccaagaaa cttgccaccg taccacgacc gttgccgcct aattggaatc sagaccttgg      3000
     agaacaggcg acatgttgct caaacagcwt ttgtttccaa actgctgaaa ggtgaaatcg      3060
     actctccttc cctgttggct gatgtaaatg tgtatgcacc agaacgaaca ttgcgtaggc      3120
     gtcacttcat tagtctagga agtcggagta ctctttatgg acagcatgat cctgtaagat      3180
     tcatgactgc aaagttcaac gaagtcttcc atctgtttga tttcaacgtt tcgattacaa      3240
     cacttcggaa tcgtttcgtg cagtactttg gtagaaactg actgttcatg tttgtgttat      3300
     ttataattag tttatgttag tttattcatt aagactacat tatgtcagat ggattatttg      3360
     aaatacaata caatmcaata ca                                               3382
//
ID   CR1_Ele27   repbase;    DNA;    INV; 4880 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele27.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4880
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4880
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 11
CC   sequences with >94% identity, and ~97% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           399..1181
FT                 /product="CR1_Ele27_1p"
FT                 /translation="MDCAKCXMKIAGIESPVVCRGYCGSVFHMTCAGVSRA
FT                 LTDYFXKHRKNLFWMCDKCAXLFENSHLRAITKQADEKSPLXSLTNAITNL
FT                 QTEIQKISSKPASTMSSPNRWPMISEMTRAKKRPRGFDSSECQSGSKQLDQ
FT                 NVVSVPVSEKPAAKFWLYLSRIRLDVTNEAIAAMVKANLELDSDPVVVKLV
FT                 AKGADTSNMSFVSFKVGLDPSLKDXALDPSTWPEGIMFREFEDYSSQKFRR
FT                 APTVSPGLSPLATTATITVN"
FT   CDS           1487..4804
FT                 /product="CR1_Ele27_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVDSPVLIWAPRRALHHDPPFFNQHSPGCTCESFMED
FT                 SNPPETVEPINEYSPYLHHPISSCQHRHPGPVFVERGGVFQTPTAGKYSNC
FT                 SSLHLPEVLLDTHRTHFDAADANDGTPEGTQHSVEIHHSDVQCATQQHSGH
FT                 QRGLATTPVNRQSTPVDRFLSVYYQNVRGIRTKTNTLRLMLSSCDYDVIVF
FT                 TETWLRQDIADSEISSEYNIFRCDRSAATSEFSRGGGVLIAVKTALQCSAL
FT                 ELSDCGQLEQMVVRIKLANRSLIIVAIYLRPNSIPASYTAHTNAIQALCDM
FT                 VSDTDIILALGDYNLPNLQWQFDEDINGYLPTNASTEQDVILTESFSTSGL
FT                 IQLNSISNSNGRILDLAYANTPDYIELIDPPLPLIKMDEHHKPFILRLDTR
FT                 YTSPCFDNVPMDATAFDFKRCDTDALRYKLSSIDWIHQLSCSSVDETVCAF
FT                 YNILHGIFDQCVPHRRLAPAIVNRKPWWTAELRQMRNRLRKTRNRYFGDRT
FT                 DANRIALHQLETDYNDLLSSTYAVYVNNIQSNLKQNPSSFWSFVRAQKSSK
FT                 RTPCNVEYNGQTASSAKEAANLFANFFQSVFRDSSPAARFHHLPSYDVNLP
FT                 DFRFSAGEVLELLHCLDASKGPGVDGLPPSFIKSCAHELVTPVALIFNRSL
FT                 TEGTFPAMWKTARMIAIHKGGSINHVENYRGISILCCLGKVFETGVRRYLY
FT                 NAAKPFISEFQHGFVENRSTTTNLMEYVNTLFPAVESRCQVDSVYVDFSKA
FT                 FDLVPHNLLIEKLRHLGFPNWITNWLNSYLTDRKAFVQVNQQVSTHFPIPS
FT                 GVPQGSVLGPLIFVLFINDLADRVSSGKLFFADDLKMFRIIASALDCTALQ
FT                 NDIDQLTDWCQENGMFVNIKKCKVITFTRCHTPICFSYKIGSASLERVESI
FT                 RDLGVIMDSRLNFNEQVSLAVSKAFSVLGLVRRHSTFITDIYALKALYCSL
FT                 VRSILEYAAPVWAPHQVTQILKIERVQKYFIRFALRQLPWENPSELPPYNS
FT                 RCLLIDLETLSARRTKLQRVFIFDLLSNRIDCSALLNSXNINVPSRTLRSH
FT                 NALVLPVSRTXYGFNNPFYVCIRAFNTVFHLFDFDISKNVFVSRIKNIA"
XX
SQ   Sequence 4880 BP; 1307 A; 1241 C; 996 G; 1298 T; 38 other;
     aaaatcwtct ggcatcactg attgcttwca atcgtgttta ctttgaagcg gagtwtttgk        60
     ttacgttttt atcgttttgt gaagtgtgta aattcgtgat ccgtcgctca acccktttat       120
     gwatgtgaca amattgaacc gtggctggaa tattgkacak atactgtgcc ktagtgswaa       180
     awaagtgttg tgattcctgg tcgagtgctg acaaaaacac tccccttacc tgccccccat       240
     cgcaattttt tcgtgatcag cgacatcttc cggaaaatat tgggactama aattgctwgc       300
     aataatccaa tccaagtgct attttcacca ccgtcaccma scttcgcatc gttcctcgcg       360
     cagcctactt aaaggcgcat tcgatcaagt tcttaaccat ggactgcgcc aaatgcwcca       420
     tgaaaattgc gggaatcgaa tcacccgttg tctgtcgtgg ctactgcggc agcgttttcc       480
     acatgacttg tgctggtgtk tcacgtgctc ttacggacta ctttkcgaaa catcggaaga       540
     atctcttctg gatgtgtgac aaatgtgcag awcttttcga gaattcacat ctgcgggcca       600
     taacgaaaca agcagacgag aaatctccgt taatktcatt gaccaatgcc atcacgaatc       660
     ttcaaacgga aatacagaag atttcgtcga aacctgcatc aacgatgtca tctccgaacc       720
     gttggccaat gatwagcgaa atgacacgag ccaaaaaacg acctcgagga ttcgactckt       780
     cagaatgtca atctggttca aaacagctgg atcagaatgt agtatccgta cccgtaagcg       840
     aaaaaccagc tgctaaattt tggctatatt tatcccgtat cagactagat gtgacgaacg       900
     aagcgatcgc cgctatggtg aaagcaaatt tggaacttga cagcgatcct gtcgttgtta       960
     aattagtagc caaaggggcg gacacaagca acatgtcttt tgtgtccttc aaagttggcc      1020
     ttgatccttc attgaaagat awcgcgcttg atccttccac ttggccagag ggaatcatgt      1080
     ttcgtgagtt cgaggactac agttcwcaaa aatttcggag agcgccaaca gtaagccctg      1140
     gattgtcwcc gttagcwaca accgcgacga taactgtmaa ttgaatgctc atctaccttc      1200
     gccgggatgc acctgcgaaa gctgtaagga aggccttatc ccacccgaaa cagtcgcacc      1260
     attcaccatt caccatcaac gactatatcc gtacaactta gtcagttcct gccatcaaag      1320
     tcatcccggt cctgttttcg cggaaaaggg agaggccttc cggactcccc tcgcaggcaa      1380
     gtatctaaat tatgcatctc ccatcgtacc tgaagtattc tcggatttca gtaatgctga      1440
     ctgtgaaaga gcctatttcg gtggccaacc tgttcttgga aacctgatgg tcgattcccc      1500
     cgttcttatt tgggcccccc gacgtgcact acatcatgat ccaccgttct tcaatcaaca      1560
     ttcgccggga tgcacctgcg aaagcttcat ggaagactcc aacccacccg aaacagtcga      1620
     gccaatcaac gaatattcgc cttatttgca tcacccgatc agttcctgcc aacatagaca      1680
     tcccggtcct gttttcgtgg aaaggggagg ggtcttccaa actccaaccg caggcaagta      1740
     ttctaattgc tcatcccttc atctgcctga agtgcttttg gatacccaca gaacacattt      1800
     cgatgctgct gatgcaaatg acggaacacc tgaaggcacg cagcattccg tggaaatcca      1860
     ccattctgac gtacagtgcg caacacagca acattctggt catcagcggg gattagctac      1920
     tactcccgta aacagacaat caacgccagt cgatcgcttt ctgagcgtat actaccagaa      1980
     cgttagggga attcgtacta aaaccaatac gcttcgcctt atgctaagca gctgtgacta      2040
     cgatgtcatc gtcttcaccg aaacgtggct tcggcaggat atcgccgata gcgaaatctc      2100
     ctctgaatat aacatcttca gatgcgatcg tagcgcggca acaagcgaat tttcgagggg      2160
     tggcggtgta ctaatcgctg tcaagactgc tcttcaatgt agtgcacttg aactaagtga      2220
     ctgcggtcaa ctcgaacaga tggtagttcg catcaagctt gccaaccgat cactcatcat      2280
     cgtcgctata taccttcgac caaactccat tccagctagt tacaccgctc acaccaacgc      2340
     catccaagct ctttgcgata tggtttcaga caccgacatc atactagctc taggcgatta      2400
     caatcttcct aacctkcagt ggcagtttga cgaagacatc aatggctatt taccgacgaa      2460
     tgcttctacc gaacaagacg ttattttgac cgaatctttt tccactagtg gcctcattca      2520
     gttgaactct ataagcaact ctaatggtag aattctagac ttggcatacg caaacactcc      2580
     tgactacatc gaactcatcg acccaccttt gcccctgatt aaaatggacg agcatcacaa      2640
     accgtttatt ttaagacttg acacacggta cacttcacca tgttttgaca acgtcccaat      2700
     ggatgccacg gctttcgact tcaagcgatg tgatactgat gcgcttcgct ataaactctc      2760
     ttcaatcgat tggatccatc aactcagctg ttcttctgtg gacgaaacgg tgtgtgcttt      2820
     ctacaatatt ttgcatggca tattcgatca atgcgtgcct catcgtcggc ttgctccagc      2880
     aatcgtcaat cgcaaacctt ggtggacagc tgagctccgt caaatgcgta acaggttacg      2940
     aaaaactcgg aatcgatact tcggcgatcg aactgatgca aatcgaattg cacttcacca      3000
     gctggaaact gactacaacg acttgctttc atcgacctat gcagtatatg taaacaacat      3060
     ccaatccaac ttgaagcaga atccatcctc gttttggtca ttcgtccgag cacagaagtc      3120
     atcaaaacgc actccatgca acgtcgaata caacggacaa acagcaagct cagccaaaga      3180
     ggcggcaaac ctatttgcca actttttcca aagcgtgttt cgagattctt ctccagcagc      3240
     cagattccac catcttccat cgtatgacgt caacttgccg gatttccggt tctccgccgg      3300
     ggaagtctta gaactgctgc actgtctgga tgcatccaag ggaccagggg tagacggact      3360
     accaccatcg tttataaaga gttgtgcaca cgagctggtc actccagtag cgctgatctt      3420
     caatcgctct ctgacagagg gtacattccc ggctatgtgg aaaactgcaa gaatgatagc      3480
     aatccacaaa ggaggatcca tcaatcatgt cgagaactac agaggcattt cgatactttg      3540
     ctgccttggt aaagtgttcg agaccggtgt tcgtagatat ttatacaatg ccgcaaaacc      3600
     cttcatcagc gaattccagc atggcttcgt cgaaaaccgg tcaacaacga caaatttgat      3660
     ggaatatgtc aacactctgt ttcctgcagt ggaatcacga tgccaagttg actcggtgta      3720
     cgtggacttt tctaaggcct ttgacctggt tccgcataac cttcttattg aaaaactgcg      3780
     tcatttgggc ttcccgaatt ggatcactaa ctggcttaat tcttatctca cagaccgcaa      3840
     agcgtttgtc caagttaacc agcaagtttc gactcatttc cccatccctt ccggagttcc      3900
     gcaggggagt gtgcttggtc ctctaatatt cgtcctgttt atcaacgatc tagcggaccg      3960
     agtgtcttca ggtaaattat tctttgccga tgacctcaaa atgttccgga ttatcgcttc      4020
     cgccttagac tgtacagcct tgcaaaatga tatcgatcaa ctcactgact ggtgccaaga      4080
     aaacgggatg ttcgtcaaca taaaaaagtg caaagtaatc actttcactc gatgtcatac      4140
     tccgatttgt ttttcataca aaatcggttc agcctcactt gaacgggttg agtccattcg      4200
     wgacctgggw gtgataatgg atagcagatt gaatttcaac gaacaagtct cattggcggt      4260
     atccaaggcg ttttctgtgc ttggtctcgt tcgccgtcat tcaacgttca tcaccgatat      4320
     ctacgctcta aaagccctgt actgttctct tgttagaagt atactggaat atgccgcccc      4380
     agtgtgggcc ccgcaccaag taacacagat tttgaaaatc gagcgtgttc aaaagtattt      4440
     cattaggttt gctctccgtc aactcccctg ggaaaaccct tcagagctgc ccccatacaa      4500
     ctcgcgctgc ctgttaatcg acctggagac gctttccgcc aggcgcacaa agctgcaacg      4560
     cgttttcatw tttgatttgc tctcaaatcg cattgactgt tcwgctctgc ttaacagtmt      4620
     caatataaat gtcccttctc gcaccctccg aagccataat gcattggttc tcccwgttag      4680
     taggacgamk tacgggttca ataatccatt ttatgtttgt attcgtgctt tcaacactgt      4740
     atttcatctg tttgactttg atataagcaa aaatgtattt gttagtagga ttaagaatat      4800
     agcctagaat agcgtacagt ctgtacggct aaggccgaag acggagaata aataaataaa      4860
     taaataaata aataaataaa                                                  4880
//
ID   CR1_Ele28   repbase;    DNA;    INV; 4941 BP.
XX
AC   .
XX
DT   23-OCT-2010 (Rel. 15.10, Created)
DT   23-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele28.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4941
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4941
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 24
CC   sequences with >94% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           352..1176
FT                 /product="CR1_Ele28_1p"
FT                 /translation="MAKSCGKCAEAITGLDLVICRGYCRSAFHMNCTTVTR
FT                 ALQSYFTSHKKNLFWMCDKCAELFENSHFRAISVPQNDDWPLSSLTTAITE
FT                 LRTEIQQMAAKTTSSLTPVARSRWPVVGQRMQFKRKREEQNESRVTEACKT
FT                 GAKQSVGNVVAVPTCVEQQDTKFWLYISRIRPDVSSDAVMAMVKANLEIEA
FT                 DPTVVKLVPKGKDISSLTFVSFKIGIDADLKSKALDPATWPEGIMFREFED
FT                 FGAQRSQLPSKVPRFLTPSNRDVLTPDTPVMNLT"
FT   CDS           1694..4867
FT                 /product="CR1_Ele28_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MHQLNSLPAQMWSPGCTSPASPKEASNPLITVEPLLP
FT                 AFSSHPGPVFEHGEEVFRILNAGKYSPMLSNFSAVTSAASSVSSTPQLDHN
FT                 AQPPTTCDGTSSAPPGKHLFSLYYQNVRGLRTKISKLRLLLSSCDYDVLVF
FT                 TETWLRPDIVSAEISPDYVFYRCDRSSSTSHYSRGGGVLIAVKCRFKCELV
FT                 PLSSCEHLEQVTIRVKMSHRSLYVVAVYLPPNSPTDVYSAHASAVEHIANI
FT                 SSKKDIILSLGDFNLPNLRWQLDDAMNGYIPSNISSEPEQSLVEAMFAIGL
FT                 QQVNNLVNINDRLLDLAFVSLPEYLDLIPPPIPLLTIDNHHMPFVLIFDEC
FT                 EELISEPDDFIENSNFNFNACDYDQLNEALAAIDWNAVLQCGSVDEMLISF
FT                 YDKLYGIFNEHVPRKRRKFTSTFSKPWWSAELRNLRNILRKARKRFFLTKS
FT                 EGERENLHDVEIAYKELLLSSHENYVSTIQTNVKQNPSLFWDFVKKQKGTT
FT                 RITSNVHLNGSHASTNKEAADLFASFFESVFSRAAPVPRRDCFAHIPTIDI
FT                 SLPVIQFSCNEVLEAINELDVSKGQGTDAVPPLLLRNCSTTLADPITKIFN
FT                 RSLSEKTFPALWKQACIVPIHKSGNCSSVSNYRGVSILCCMSKIFEKMVHS
FT                 ILYNVAVPIISNTQHGFMRRRSTTSNLMSYVATLSRELEHRRQVDSVYIDF
FT                 AKAFDTVPHVTIVNKMKHIGFPDWIIDWLRSYLSDRSAYVVINSARSRSFA
FT                 ITSGVPQGSVLGPLLFNIFVNDLSLLLSSFVLSFADDMKMYRTIFSQLDCV
FT                 ALQEDVNTLLIWCGDNGMRVNGTKCKVISFSRCSDKTVFEYSIDSVLLQRV
FT                 TSICDLGVIIDEKLKFNEHIGVTAAKAFSALGFIRRHAADFTDIYALKILY
FT                 CSLVRSILEYAAPVWCPYYSTLVLKIERVQRRFIRFALRNLPWNDPVHLPP
FT                 YPDRCRLIGLETLSQRRVSMQCVFIFDIIQGNIDSPVLLEQIPLYVPPRQL
FT                 RYSSMLAIPHHRTNYGHFNALDFCLREFNRFSDSFDFNVSKNVFVNRIRDR
FT                 I"
XX
SQ   Sequence 4941 BP; 1311 A; 1211 C; 1033 G; 1385 T; 1 other;
     agtcgttaat tcatagactg tttactttcg gactctgttt tgcactattc gacccgtatt        60
     agtggagttt tgtgatattc tgccctgaaa gtgctgtgtt ttgtgttatt aaaaagtgtt       120
     tatcgcgatt cagtaaagag cwcttccatc aacccacgcc catttttctg cgaacagcga       180
     catcttgcgg tgatcactac aaattgattt ttgcacgcaa gcttgcacgg cattccgtag       240
     ccgttgtgga tattcaacaa ccatcacacg caaaacgctt gtctgcttct ccaacaccgt       300
     acgtgcataa ttaaaggcgt ttgctcacat cccatacgcg tggacgcaga aatggcaaaa       360
     tcatgcggca aatgtgctga agcaattact ggacttgatc tggttatctg tcgtggttac       420
     tgcagatctg cattccacat gaattgcaca actgtgactc gcgctttgca gtcgtatttc       480
     acgtcgcaca aaaagaattt attctggatg tgtgataaat gtgcggaatt gttcgaaaac       540
     tcacattttc gagcaatctc tgtaccacaa aacgatgatt ggccactatc gtcgctgaca       600
     accgctatta ccgagctccg aacggaaatt caacagatgg ccgctaaaac tacatcttct       660
     ttgaccccag tcgcacgcag cagatggcct gttgtaggtc aacgcatgca gtttaagcgc       720
     aaacgcgagg agcagaatga atctcgtgta actgaggctt gtaaaactgg cgctaaacaa       780
     tctgtcggta acgtagtcgc cgttcctacc tgcgtcgaac aacaggatac caaattttgg       840
     ctttacatat ctcggattcg accggatgtt tcttccgatg ctgtaatggc aatggtaaaa       900
     gccaatttgg aaatagaagc agaccctact gttgtcaaat tagttccaaa gggaaaggat       960
     atcagctcgt tgacattcgt gtcatttaaa attggaattg acgcggatct gaaatccaaa      1020
     gccttagacc cagctacttg gcccgaaggt attatgtttc gggaatttga agattttggc      1080
     gctcaacgat ctcaactacc ctcaaaagtt ccacgttttt taactccaag caaccgcgat      1140
     gttcttactc cggacactcc tgtgatgaac ttgacttaaa ctgtgcaata aatcgtcatc      1200
     aaatcatcca ggaactggga cgcaataaaa ttcgctccat ggaagcccca aatccacccg      1260
     ccacagtcgc gcctttgctg tcaacgttca tcagtcgtcc tggtcctgtg tgtgggattg      1320
     gaggaggggt cttccaacat cctacgaacg gcaagtacaa caatagaata tacagaacag      1380
     ttactgattc gtttcacggt tccagcgatt catttgatct ttgcacgtcg tttgagttac      1440
     catcgttcat cgcgataccg ggatgcacgc ctgcaagcaa taaggaagcc tccaaccccc      1500
     tctcacagtc gagcccatcc cgccagcgac ccgcagtcat cccggtcctg tgtttgagat      1560
     cgggaaggag gtcttccaaa ttaacatcgc aggcaagtac acgcaagcat cgaacaattt      1620
     ccttccattc acgtcgtctc tcgcctctag tgaagtatgc cagcgcagcc cattggatgt      1680
     aaattcaccg gacatgcatc aattgaattc actgccagca cagatgtggt caccgggatg      1740
     cacgtcgcct gctagcccaa aggaagcctc caatcctctc atcacagtcg agcccctcct      1800
     gccagcgttc agcagtcatc ccggtcctgt gtttgagcat ggagaggagg tcttccgaat      1860
     cttgaatgca ggcaagtaca gtccaatgtt gagcaacttc tctgcagtaa catccgctgc      1920
     ttctagtgtt tcatcgacgc cgcaattaga ccataacgca caacctccga cgacctgtga      1980
     tggcacatcc tctgcaccac ccggaaaaca cttgttctca ctctactatc agaacgtgag      2040
     aggcctacgt accaaaatat caaaacttcg gttgttattg tccagttgcg actacgacgt      2100
     gttagtcttc actgagactt ggcttcgacc tgacatcgtc agtgcagaaa tttcgccgga      2160
     ttacgttttt tatcgatgcg accgtagcag ctctactagt cactattcaa gaggaggtgg      2220
     ggttttgatt gccgttaagt gccgcttcaa atgcgagtta gttccgctgt cgagttgtga      2280
     acatcttgag caagtgacta tccgagtgaa gatgtcacac cggtcactgt atgtcgtggc      2340
     tgtatatctt cccccgaatt ctcccaccga tgtttactct gctcatgcaa gtgcggttga      2400
     acacattgcg aacatctcgt ccaaaaagga tatcattctt tcgcttggtg acttcaacct      2460
     tcccaatctg cgttggcaat tggatgacgc tatgaacggg tacattccat caaacatttc      2520
     ctctgaacct gaacagtccc ttgtggaggc catgtttgca atcggtcttc aacaagtcaa      2580
     caatctcgta aacatcaacg acaggttgct agacttggca tttgttagtc tgccggaata      2640
     tcttgacctc attcctccac ctatcccact tttaaccatt gacaaccatc atatgccctt      2700
     tgttttaatc tttgacgaat gtgaggagtt gatatctgaa cctgacgact tcatcgaaaa      2760
     ttccaatttc aattttaatg cttgtgatta cgaccagctg aacgaagcac ttgctgccat      2820
     tgactggaat gctgttctac agtgcggcag tgtggatgaa atgctaatca gcttctacga      2880
     caaactgtat gggattttca acgagcacgt tccccgaaaa aggcgaaaat tcacttcaac      2940
     attcagcaag ccctggtgga gtgcagaact gaggaatctg cgaaacatct taagaaaggc      3000
     acgtaaacgg tttttcttga cgaaatccga aggtgaacgc gaaaacctgc atgatgtgga      3060
     gattgcatac aaagaactct tactatcttc tcacgaaaac tatgtcagca cgatccagac      3120
     taacgtgaaa caaaaccctt cgttattctg ggactttgtg aaaaaacaaa aaggcactac      3180
     tcgcatcacc agcaatgtcc atcttaatgg ttcccacgct agtacaaaca aagaagccgc      3240
     tgatttgttc gcgtcattct ttgaaagtgt attcagcaga gcagcacctg ttccccgtcg      3300
     tgattgtttc gctcacatcc caaccatcga catctcgctt cctgttatcc agttttcctg      3360
     caacgaagta ttagaagcta tcaatgaact cgatgtttcg aaaggccagg gcacagacgc      3420
     cgttccccct ctcctgttaa ggaattgctc tactacgtta gctgacccta tcaccaaaat      3480
     cttcaatcgt tctctcagtg agaagacatt tccagcattg tggaaacagg cttgcattgt      3540
     ccctattcac aaatctggga attgcagttc tgtctctaac tatcgtggcg tttctattct      3600
     gtgctgcatg agcaaaatat ttgaaaaaat ggtgcatagc atactgtaca atgtagcagt      3660
     tccgatcatc tccaacactc aacatggctt catgaggcgc aggtccacaa catcaaatct      3720
     catgtcctac gttgccacac tatctcgtga attggagcat agacgtcaag ttgattccgt      3780
     ttatatcgat ttcgcaaagg cttttgacac cgttccacat gttacaatcg tcaataaaat      3840
     gaagcatatc ggatttccgg attggatcat agattggcta cgttcgtatt tatcagaccg      3900
     atccgcatac gtggtgatca actctgcgag atctcgatcg tttgccatca catcgggcgt      3960
     acctcagggt agcgttcttg gaccgttgct attcaacata tttgtaaacg acttaagtct      4020
     tctactgtcg tcgttcgttc tatcatttgc tgacgatatg aagatgtacc gtacaatatt      4080
     ttcgcagctg gactgtgtag cacttcaaga ggatgttaat acgctgctga tatggtgcgg      4140
     tgataacgga atgcgcgtca acggtaccaa gtgtaaggtt atttccttca gtagatgcag      4200
     tgacaaaacc gtttttgaat actcaatcga ttcggttctt ctgcaaaggg tgacgtctat      4260
     ctgcgacttg ggcgttatca tcgacgaaaa gctaaaattc aacgaacaca taggggttac      4320
     cgcggccaaa gccttttccg ctcttggatt tattcgtcgg catgctgcag atttcacaga      4380
     catttatgca ctgaaaattc tctactgctc actagtacgt agtatacttg aatacgctgc      4440
     tcccgtatgg tgtccttatt attctacgct ggttctcaaa attgaacgtg tacaaaggag      4500
     attcattagg tttgcactac gcaatcttcc gtggaatgat cccgtccatc ttccgcctta      4560
     tccagaccga tgccgcttga tcggtttgga gactctatca caacgacgtg tttcgatgca      4620
     gtgtgtgttc attttcgaca tcattcaggg caacatcgac agccctgtgc tccttgaaca      4680
     aatccctttg tacgtgccac cccgtcagct tcgttactcc tcaatgctag caataccaca      4740
     ccatcggacg aattatggcc attttaatgc acttgacttt tgcctacgag aattcaacag      4800
     attcagcgat tcgttcgatt tcaatgtgtc aaaaaatgtt tttgttaata ggataagaga      4860
     tagaatttaa gtaaagtaca taatattaag ttttcagtct gtgtgacgtg tagtcaaaga      4920
     cggtgaataa ataaataaat a                                                4941
//
ID   CR1_Ele29   repbase;    DNA;    INV; 4480 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele29.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4480
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4480
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           591..1469
FT                 /product="CR1_Ele29_1p"
FT                 /translation="MEICNSCAVNMTAPEVVCGGFCKATFHFKCAKISDTL
FT                 YSQIVTNSATFWMCQGCREIMGNARFKNTLNSMNAATKEVNDMYQKLVDDL
FT                 KTEIKDSLIAELKQEIQGGFNKLSPAILSPAPXRFQFNNRSASKRLRDRDE
FT                 VTFQLPDQPSKVFRGTNQAINASEDSADRSXNRFWIYLTKISPEVTEDDVV
FT                 NLAKNCLQTENVVAKVLVPKGRPLSSFSFISFKVGVSNDLKSRALDPSNWP
FT                 REIQFREFVETSSSVRHFWKPGQAADPGVSNNPELRPAPASTSYQPHQQLT
FT                 E"
FT   CDS           1355..4417
FT                 /product="CR1_Ele29_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RSTFLETRTGCGSWGFEQPRIASCSSVNLVSASSTTH
FT                 RIDSSDNPLMLSTPYLIPHNTSPTCSTSGSQSFPTSLTVYYQNVRGLRTKT
FT                 NNLLLSLLTCDFDIVVLTETWLHSEIASSELTCNYVIYRCDRNSSTSNLRR
FT                 GGGVLIAVKSELNCKAANLTSPVDLEQTIVQIVLPHLSVYICCVYIRPNSH
FT                 PDIYTKHVESVDQVLKEVNAHDIILCLGDYNLPNLTWRFDEDLSGFLPTNV
FT                 STEQEIALVEPMLSTGLYQINDVLNVNDRLLDLVFVSDPCIIDLFESPSSL
FT                 LKIDAHHKPIILSLDARSRHARLQSSPELSADYDFSRCDYHAINNLIASQD
FT                 WNQLLDQDSVDNSVATFYHVINRIISETVPVKAKRSTKSFRQPWWTPQLRN
FT                 LRNRLRKARKRFYRNRNPTTISNLKTAEDDYLRLQHNRFREYVNSLQSNFK
FT                 QDPSSFWTYINKRKSSATIPADVSYRTRSAGSPEENANLFAEFFRSVYVEN
FT                 PPPISQDYVNSLPSYNIQLHRVTFDGDSIRAALSKVDASKGPGPDLIPPSF
FT                 IKQCAQSLAAPIASIFNRSLIEGVFPEAWKLASITPIHKSGSVHDVENYRP
FT                 ISILCCLAKVFETLLHDALYPVVQPAISESQHGFVKKRSTTSNLMTFTHAV
FT                 FDKLEKRSQVDAIYVDFSKAFDKVPHNLAIAKLNRLGLPCWTIQWLKSYLS
FT                 SRKAFVKVQGARSDIFGISSGVPQGSHLGPLIFVLFINDLCDQLDCGKLLY
FT                 ADDLKLFRTIKTLLDCCALQADVDRVSNWCDLNGMQMNANKCKVISFSRRQ
FT                 STTVFDYSLNSSSLERVSSIKDLGVILDSKLRFHEHIATMTAKANAMLGFL
FT                 RRNTQLFDDAYALKSLYCALVRSVLEYGVQIWAPYHAVHVESIERVQKRFI
FT                 RYALRGLPWNDPAHLPPYEHRCALIGVQSLANRRTLLQRLFVFDVITGNID
FT                 CSSLLANVQFHAPARQLRNRQLLWIPSHRSLYGYNNPLDSCCRLFNDVCDV
FT                 FDFNISKLVFKNRIK"
XX
SQ   Sequence 4480 BP; 1190 A; 1112 C; 916 G; 1259 T; 3 other;
     tcattaaaat aagtcaggta ggatagtgaa tttctacgaa aattccgagt cggcttgagt        60
     gtggttcgag tttagtaagc ccactggcac agccgcctgc catatctact cccacctcgc       120
     cgctctccac ctgaactgcc gttgtattac gatcaagtca tcgctgctct aataccatca       180
     caaaatcacc acctccaccg ccggcctcga tcagcatttg tatgtcctgc gaaaaatcaa       240
     attccgttcc tcaatccaaa tctacacccg attgtactgc caagcctgct gaataaagcc       300
     tgattttcta ctgctgttct cactccgata tccgaaaacg acccagcata aacctgccct       360
     cctgcctatt cgccgcatcg cctgcattcc caactgcata gaaggtaaac aaacatcatt       420
     ccgtcccgct catcccgtgc gtagtttgag gctgtgtgtg cacactcata cattacccga       480
     tcagattgtg attatccgtc atctcgccag tgctgccatt tgttgcgatt ttccgaagtt       540
     ttttttttgc ggtaagagca tctccacccg ctgtttcaat tttcaccgat atggaaatct       600
     gcaacagttg tgccgtcaac atgactgctc ccgaagtcgt ctgtgggggt ttctgcaaag       660
     caactttcca cttcaagtgc gctaaaatat cggatacgct ctacagtcaa atcgtaacta       720
     actccgctac cttctggatg tgccaggggt gtcgcgagat tatgggtaac gcacgtttca       780
     agaatacttt gaattcaatg aacgctgcta ctaaagaagt aaatgatatg tatcaaaaat       840
     tagtcgacga tctgaaaacc gagattaagg acagcttgat tgccgagttg aaacaggaga       900
     ttcaaggcgg cttcaacaag ctttctccmg ctatcttgtc tccagcgccc gkccggtttc       960
     agttcaacaa ccgttctgct tcgaagagat tacgtgatag agacgaggtc acctttcaac      1020
     tgcctgacca gccttcgaaa gttttccgtg gaacaaatca agccatcaat gcgtctgaag      1080
     actccgctga taggtcggaw aacaggtttt ggatatatct gacgaaaatt tcgcccgaag      1140
     tcacggaaga cgacgttgtc aaccttgcaa aaaactgctt gcagaccgaa aacgtggtag      1200
     cgaaggtttt ggtgcctaaa gggcggccgc tatcgtcgtt ttcattcata tcgtttaagg      1260
     taggtgtcag taacgattta aaatcaagag cattggatcc ctctaactgg ccccgtgaaa      1320
     ttcaattccg agagttcgtc gaaaccagtt ctagcgttcg acatttttgg aaaccaggac      1380
     aggctgcgga tcctggggtt tcgaacaacc cagaattgcg tcctgctcca gcgtcaacct      1440
     cgtatcagcc tcatcaacaa ctcaccgaat agacagttcc gacaatcctc ttatgttatc      1500
     cacaccgtac ctaattccgc ataatacgtc tccgacttgt tctacgtccg gtagtcaaag      1560
     cttccctacc tcactgacag tttactatca gaacgtccgt gggttgagaa caaaaacaaa      1620
     caacttgctt ctctctctgc ttacttgcga cttcgacata gtggtgttaa ctgaaacctg      1680
     gctccactcc gaaattgctt ccagtgaact aacttgcaac tacgtaatct atagatgtga      1740
     tcgtaattct tccaccagca atcttcgaag aggtggcgga gttctaattg cagtgaaatc      1800
     tgagctgaat tgcaaagccg ctaatctgac atctcctgtc gatttggaac aaactatcgt      1860
     gcagattgtt ttaccacatc tttccgtgta tatttgttgc gtttatattc gaccgaacag      1920
     tcatcctgat atttacacga aacacgtcga atctgttgat caagtactga aggaagtcaa      1980
     cgcccacgat attattttat gccttggtga ttacaatcta cctaatttga cctggcgttt      2040
     tgatgaggat ctttcagggt ttttaccaac caacgtatca accgaacagg agattgcctt      2100
     agttgaacct atgttgtcga ctggtttgta tcaaatcaat gacgttctga acgtgaacga      2160
     taggttactt gacttggttt tcgtaagtga tccatgcata attgatctct tcgagtcacc      2220
     atcatcgctt cttaaaattg acgctcacca taagccaatc attttatcgt tggacgcccg      2280
     ttctcgtcac gcaagactgc aatcatctcc tgagctcagt gctgactatg acttctcccg      2340
     ttgtgactac catgctatta acaacttgat agcttctcag gattggaatc agcttcttga      2400
     ccaagactct gttgataact cagtggctac tttctaccac gttattaacc gaatcatcag      2460
     cgaaactgtt cccgtcaaag ctaagcggtc tacgaaatcg ttcaggcaac cttggtggac      2520
     accgcagctt cgtaacctcc gcaaccgttt acgaaaagcc agaaaaagat tctatcgtaa      2580
     cagaaatccc acaacgatca gtaatcttaa gacagcggag gatgattatt tgcgcctaca      2640
     acataatcgt ttccgggaat acgtcaacag cctccaatcg aattttaagc aagatccatc      2700
     atccttttgg acgtacataa ataagcgaaa aagttcagcc acaatccctg ccgacgtttc      2760
     ttatcgcacg cgtagtgccg gctcacccga agaaaacgca aatctctttg cagagttctt      2820
     tcgttcagta tacgttgaaa atccacctcc aatatctcag gactacgtaa acagccttcc      2880
     atcgtacaac atacagctcc atcgagtcac gtttgacggc gatagtattc gtgcagcact      2940
     cagcaaagta gatgcttcaa aaggtcccgg acccgacctt attccgccaa gcttcatcaa      3000
     acaatgcgct caatcgcttg cggcgccgat tgcatcgatt ttcaaccgtt cgttgatcga      3060
     gggagtcttc cccgaagcgt ggaagctcgc gtctatcact cctatacata aatcggggag      3120
     tgtacatgac gtggaaaact accgaccaat atctattctc tgctgcttgg cgaaggtctt      3180
     cgaaactttg ctacacgatg ctttgtatcc agttgtgcag cccgctatat ctgagtctca      3240
     gcacggattc gtcaaaaagc gatcaacgac gtcgaatctg atgacgttca ctcatgctgt      3300
     gttcgacaaa ctcgagaaac gtagccaagt tgatgccata tatgtggatt tctcaaaagc      3360
     tttcgacaag gtacctcaca atttagccat cgcaaaactg aaccgccttg gactgccttg      3420
     ttggaccatc cagtggctga aatcttattt atcctcccgt aaagcttttg tgaaagtaca      3480
     aggcgcgaga tctgatatat ttggtatatc ctccggagtt ccacaaggaa gtcacctagg      3540
     tccacttatt ttcgtgctct tcataaacga tttgtgtgat cagctggact gtggcaaact      3600
     actgtatgca gatgatttga agctatttcg tacgatcaaa acattgctgg actgttgcgc      3660
     gctacaagct gatgtcgata gagtttccaa ttggtgtgat cttaacggta tgcagatgaa      3720
     tgctaacaaa tgcaaagtca tatcattcag ccgtcgtcag tccaccacag tttttgacta      3780
     ttctttgaat agctcatcgc tggagagagt atcgtccatc aaggatcttg gagtgatcct      3840
     tgattccaaa ctccgattcc atgaacatat cgccacgatg acagccaaag ccaatgcaat      3900
     gcttggtttt cttcgccgca atacacagct tttcgacgat gcttatgcac ttaagtcact      3960
     ttattgcgcc ttagttcgca gtgtgcttga atacggagtg cagatttggg ctccgtatca      4020
     tgctgttcat gtcgaaagta tcgaaagagt ccaaaagcgt ttcataaggt acgctcttcg      4080
     aggtctgcca tggaatgatc ctgctcacct gcctccatat gagcatcgct gcgcgctgat      4140
     aggtgtgcag tctttggcta accgtcgaac tctgctgcag agattatttg tcttcgacgt      4200
     tatcaccggc aacattgatt gcagcagtct gctggcaaat gtgcagtttc acgcgccagc      4260
     tcgtcagctc cggaatcgac aattgctctg gataccttcc catcgctcgc tctatgggta      4320
     taataatccg ctcgattcat gttgtagatt gtttaatgac gtttgtgatg tttttgattt      4380
     taatattagt aaacttgtgt ttaagaatag aattaagtaa acctaagctc agtctgtgcg      4440
     gcataatgtc gaagatgttg taaataaata aataaataaa                            4480
//
ID   CR1_Ele3    repbase;    DNA;    INV; 4547 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4547
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4547
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 12
CC   sequences with >95% identity, and ~97% identical to the original
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           751..1578
FT                 /product="CR1_Ele3_1p"
FT                 /translation="MAASEVCHSCARGMTAVEVVCGGFCKATFHFSCANIT
FT                 EDLYKEIRGKPAIFWMCNGCRELMSNARFKNALSSMNAAAIEVNDTYLKLI
FT                 EEMKSEIKDSLIAEIRQEIKGGFNQLSPAVLSPLPRYFKFGHANSPKRRRD
FT                 DEAVASDQPSKILRGTGPSTADIPSIHMDRTSDKFWVYLSKICPEVSETDI
FT                 ERLAKDCLHTDEVVVKSLIPRGRSLSTLSFVSFKVGVSLELKPKAMDPVSW
FT                 PQGIEFREFIEDEGRKTQHFWKPVLSVDSGPMTSS"
FT   CDS           1488..4493
FT                 /product="CR1_Ele3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ISRIHRGRRTKDSAFLEAGTVCRLRTNDQLVEPTESS
FT                 NIPDVLPALSDRGLPRSQLTVYYQNVRGLRTKTNALLQQLLSCDFDVVIFT
FT                 ETWLHTDISNAELTSNYIIYRCDRSSRTSVLRRGGGVLIAVKSELNCKAVH
FT                 LVDCENLEQVAVHITLPHKSLFLCCIYVRPCSHPDIYIKHAESVQELLDKA
FT                 TPFDTTIIVGDYNLPNLSWDYDDDVQGFLPRNASAEQELVVVDSLLSTGLK
FT                 QINDLVNDNGKLLDLVFVSDTESMELFEPPSAMLKVDRHHKPLVLKLDSQS
FT                 PPLAPASERSEYNFARCDFNSINERLATLDWMQLLNLPTVDAAVSAFYDNI
FT                 NQIIRETVPLKTRRPTKLFNQPWWTPQLRNLRNRLRKARKRYFRCRSLENK
FT                 CNVQLAEAEYASLHEIRFRDHIKNIQTGCKENPISFWSFVNARRRSSGIPV
FT                 DVSYCDRSSSTDTTSANLFAEFFQSVFEITESPAPQQYVDQLPSFNIHLPQ
FT                 PEFSLDIVYRALSSVDASKGPGPDRLSPVFIKNCAASLATPIMCIFNRSLQ
FT                 EGVFPDVWKLASITPIFKSGNLHRVDNYRPISILNCLSKVFERLLHDMLYP
FT                 AVQPMISEFQHGFMKKRSTLSNLMTFTSSVVENVEKRQQVDAVYVDLSKAF
FT                 DKVPHDLAVEKLSRLGLPPWIVNWLKSYLSSRKAFVKIRDSSSNVFEITSG
FT                 VPQGSHLGPLIFILFINDVCDHLRSSKLLFADDLKIYRVVKSTLDCCVLQA
FT                 DIEKLLSWCQINGMQVNASKCKVITYTRGQSPIRFDYTMNHAPLERVYSIK
FT                 DLGIILDSKLRFTEHISKTIAKASSMLGFMCRNAADFDDVYALKTLYCSLV
FT                 RSVLEYGVQIWAPHHAVHELRIERIQKRFVRFALRRLPWTNPDSLPAYEHR
FT                 CALIGLETLSKRRTSLQRLFIFDMINHHIDCNSVLQKINIHAPLRQLRNTN
FT                 FLWTPAHRTAYGYNNPLDRSCRLFNGVYDLFDFNISRLVFKNRIKNI"
XX
SQ   Sequence 4547 BP; 1252 A; 1091 C; 936 G; 1268 T; 0 other;
     ctggcaacac tgctgtgctg attagttgtg ttcttctgtt tgtgtcatcg attttaaact        60
     tatttgacga aatctacacc cgaaattgct aaacgctgct gaattcatcc cacaagtgcc       120
     cgttccgtac tgctcacagt ttgtttgcaa cacacagtca ggtaggataa gtgaaattgc       180
     attttccgag caggcttgag tgtggtttga gtaagccgcc caccgccatt gcccccctat       240
     aaaaaaatct cccacctcgc cgctctccac ctgcactgct attgcaacac tgcactgtgg       300
     attgcgccac caaaacataa acaataacat ccagcatctg ttcactccgc aaagcctcgc       360
     aatcaattga tattacgcct ccatgtaccc acctgtgtac cattcatgca aataaacaac       420
     gccagcttct gctcatcttc tcattctgca atccgaaaaa cccatcagcg cttcgtccgc       480
     aacatagtcg tccgcaattc cgcatcgccg tgttcgctgc caatcatcat cgcaaaattc       540
     ttcgctgcat aaaaaaggta aacaaccgta tcatcacgtg catgagtttg tgtgagtaga       600
     acgaaagcag acaacaatca acttcgcatt gtttgagatc cgtcaacact cccctgtcat       660
     cgatcaagtc tgcgtagcca tctgtttgtc agtgcccaaa ctaacgttag agcatctcca       720
     ccggtgttgt tttgcaacag caaatatcaa atggctgctt cagaagtttg tcatagctgc       780
     gcgcgtggta tgactgccgt cgaagttgtt tgtggcggtt tttgcaaggc aactttccac       840
     tttagctgcg caaatataac ggaagacctt tacaaggaaa ttcgtggtaa acccgctatt       900
     ttctggatgt gcaatggctg tcgggaactg atgagcaacg ctcgttttaa aaacgcgtta       960
     tcatctatga atgccgctgc aattgaagtg aatgatacct atctaaaact gattgaggaa      1020
     atgaagagcg agattaaaga cagtttaata gccgagatca gacaggaaat taaaggtgga      1080
     ttcaaccaat tatctcctgc ggtgctatct ccgcttcctc gatacttcaa gtttggtcat      1140
     gccaattccc caaagagaag acgtgacgat gaggctgtgg cgtccgatca accctctaaa      1200
     atccttcgtg gtacgggacc ttcgacagcc gacataccat caattcacat ggaccgaaca      1260
     agcgacaagt tctgggtgta cttatcgaaa atatgtccag aagtatccga aactgacatt      1320
     gaaagactcg ccaaagattg cttgcacacg gatgaagttg ttgttaagtc gctgataccg      1380
     agaggccgct cactgtcgac gctgtctttc gtttcgttca aggttggagt cagcctcgaa      1440
     ttgaaaccta aggccatgga tcctgtatca tggccacaag gaattgaatt tcgcgaattc      1500
     atcgaggacg aaggacgaaa gactcagcat ttttggaagc cggtactgtc tgtagactca      1560
     ggaccaatga ccagctcgta gaaccaaccg aatcaagcaa cataccagac gtattgcctg      1620
     ccttgtccga tcgcggttta cctcggagtc aattaactgt ttattatcaa aacgtccggg      1680
     gcttgagaac caagacaaat gcgctactcc agcaactcct ttcctgtgac ttcgacgtcg      1740
     taatcttcac agagacgtgg cttcacaccg acatttccaa tgctgaattg acgagtaact      1800
     atattattta ccgctgtgat cgaagctccc gcaccagtgt attgcgtcgc ggtggcggcg      1860
     tgttaattgc agtgaaatcg gagctgaact gtaaggctgt acatcttgtc gattgtgaaa      1920
     atctcgagca agttgctgtg catattacgt tgccacataa atcgctattc ctatgttgca      1980
     tctacgttcg tccctgtagt catcccgaca tctacatcaa gcatgccgaa tccgtgcaag      2040
     agcttcttga caaagcaact ccatttgata cgactattat tgtgggcgat tacaacctgc      2100
     ctaatctttc ctgggattat gatgacgacg tacagggttt cctgcctcga aatgcctcag      2160
     ccgaacaaga gctcgttgtg gtcgattcct tactgtcgac agggcttaag caaatcaacg      2220
     atttagtcaa cgataacgga aagctgctcg acttggtttt tgttagtgac acagaatcga      2280
     tggaattgtt cgaaccgccg tctgctatgc tgaaagtaga tcgtcatcac aagccactag      2340
     ttttgaaact tgacagtcaa tctcctccat tggctcccgc atcagaacgc agtgagtata      2400
     atttcgcaag gtgtgatttt aattccatta acgagagatt agcaaccttg gattggatgc      2460
     agttacttaa cctcccgact gttgatgctg ccgtatctgc tttctacgac aacattaatc      2520
     aaataattcg cgaaactgtt ccgttgaaga ctcgtaggcc tactaagctt ttcaatcaac      2580
     catggtggac cccacaattg cgtaatctgc gaaaccgttt gcgtaaggct cggaaaaggt      2640
     actttcgctg caggagtttg gaaaataagt gcaatgtaca gcttgcggag gccgagtatg      2700
     caagcttaca tgaaattcga ttccgagacc atattaagaa tatccagact ggctgcaagg      2760
     aaaatccgat atcattctgg tcttttgtca acgctcgtag aagatcttct ggcattccgg      2820
     tcgatgtatc ctattgtgat cgaagttcct ccaccgatac cacttccgct aacctctttg      2880
     ctgagttctt ccaaagcgta ttcgaaatca ctgaatcacc agcaccgcag caatatgtcg      2940
     accagctacc aagcttcaac attcatctac ctcagccaga attcagtctt gacattgttt      3000
     acagagcgct atcatcagtc gatgcatcga agggccctgg tccagatcgt ctttcacctg      3060
     tttttatcaa aaattgtgca gcatctttag ccactcctat catgtgtatt ttcaaccgtt      3120
     ctctccaaga aggcgttttc ccagatgtct ggaagcttgc atccatcaca ccaatattca      3180
     agtccggaaa tctgcataga gtagacaact atcgaccaat ctcgatcctg aattgcttgt      3240
     ccaaggtttt cgaaagactg ctgcacgaca tgttgtaccc agcagttcaa ccaatgatct      3300
     cggaattcca acacggattc atgaaaaaac gttcgacact ttccaatttg atgactttta      3360
     ccagctccgt tgttgaaaac gttgagaagc gccagcaagt agatgcggtt tatgtagatc      3420
     tttccaaagc ctttgataag gttcctcacg accttgctgt agaaaagcta agccgccttg      3480
     ggcttcctcc gtggatcgta aactggctga aatcgtattt atcttctagg aaggcttttg      3540
     tcaagattcg tgattcttca tccaatgttt ttgagattac atctggtgtt ccacaaggaa      3600
     gtcacctggg accgcttatt tttattctat ttataaatga tgtgtgtgac catttaagat      3660
     cctctaaact gctatttgca gacgacttga aaatttaccg tgtggtaaaa tcaactctag      3720
     attgttgtgt tcttcaagct gacatcgaaa agctattatc gtggtgtcag atcaacggaa      3780
     tgcaggtgaa tgcctccaaa tgcaaggtaa tcacttatac tcgtggacag tcaccgataa      3840
     gatttgatta cacgatgaat catgctccgc ttgaacgagt ttactctatt aaggatctgg      3900
     gaatcattct agacagcaaa ttgagattta ctgaacacat ctcaaaaaca atcgctaagg      3960
     caagttccat gctcgggttc atgtgccgca atgccgcaga cttcgacgac gtttacgctc      4020
     tgaagacatt gtactgctcg ctagttcgaa gtgttctcga atacggagtt caaatatggg      4080
     ctccacatca tgctgtccac gaattgcgta ttgaacgcat ccaaaaacgt tttgtacgat      4140
     ttgctttacg gcggctccct tggaccaatc cagatagctt accagcatac gaacatagat      4200
     gtgcgcttat cggactggaa acgctgtcaa aacgccgtac ttcgctgcag agattattca      4260
     tatttgacat gataaatcat catattgatt gcaacagcgt gctccagaaa atcaatattc      4320
     atgcccctct ccgacaactg cgcaacacta acttcttatg gactcctgca caccgaaccg      4380
     cttatggata taataaccca ttggacagat cttgtagatt attcaacggc gtttacgatt      4440
     tgttcgactt caatattagt agattagttt ttaaaaatag aattaagaat atttaagcag      4500
     tctgtgtggc ttccgccaaa gatgttgaac taataaataa ataaata                    4547
//
ID   CR1_Ele30   repbase;    DNA;    INV; 4393 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele30.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4393
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4393
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 23
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           333..1187
FT                 /product="CR1_Ele30_1p"
FT                 /translation="MEKKHCGECHLEINDLEPVRCGLCESPFHISQNCCGF
FT                 NLRSCKDVFAQGKAVFVCTKCRDELNGRSIRAYIADQAHRNVSPTASADNI
FT                 NTQIQQLSGIVAELSRKVDNIANISTPKLPVVREMRTPVWPGLGMKRRRGE
FT                 NGQSLAPAADRGTGAMDFSDLSIPFITPAASPPKFWLYLSGFQPKISDDDV
FT                 QKIVARCLDLRDPFEVIRLVPKGADTKNMSFISFKIGLELALKQQALDAAR
FT                 WPTGLMFREFVDFSKNRRPLSFAREPPAVTPTQEQPTGNPETIV"
FT   CDS           1019..4189
FT                 /product="CR1_Ele30_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TSSQTASPRCSTLAYRLDVQRICGFFKKQTSTILRPR
FT                 AASSYPYSGATNGESRNYCLNTPRCLEEGGSPRALTRGEYFDVFTSSPALN
FT                 QCTLQRIPDHDSDIMVYYQNVRGLRTKIDDVFLAAHDCEFDAVIFTETGLD
FT                 DCITSLQLFGTTYNVFRCDRCPRNSNKSRFGGVLIAVAEQYTSCKIDTTSA
FT                 RNLEQISVSTNIKGKKLSLCAVYIPPDRSQDLSVINEHIASVQELCNNCSA
FT                 NETVLICGDFNRPRMRWVRNDTGIICGGSLLPPTSHTLLDGMEFLGLGQRN
FT                 LETNLLGRTLDLVFCPLECEATVGGCSMPMLPVDSHHPPLAISLHTDVDEA
FT                 LSSTVGDRIAVRPLNYRLIDFPGLSDRLNNIDWTSLFASKEVDDMAECFCG
FT                 EINRWLETNVPRVRPSFTPAWSSSRLRQLKRERNACQRKLQRRRTNANARI
FT                 FHRAVNAYRHLNASLYKSYVLRMQSSLRSNPRGFWNFVNSKRKTSSIPSNV
FT                 YFGNATASSSLESCELFARHFASVFSSHVTSQQEAENVASNVPCDLVDFGI
FT                 FVITPEMVVKAAKKLKSTFSPGPDGLPAVVIRRCITVLARPLSDIFNRSFE
FT                 QAKFPDIWKQSFMCPIFKNGDRRNVVNYRGITSLSASSKVFEIIVSGAMLE
FT                 RTKNYISFDQHGFMPGRSVTTNLLSFTSKCIASMEARAQMDVIYTDLKAAF
FT                 DKIDHTILLCKLSRLGFSSQLVCWLNSYLFGRVLRVKLDNAVSTPFSNKSG
FT                 VPQGSNLGPLLFALFFNDVALFFEDGSKLVYADDFKLFLEVRSIDDCLQLQ
FT                 SQLQVFVAWCTKNKLVISVAKCYVITFHRTQRPIVFDYNIGGTILTRVSEV
FT                 HDLGVQLDAKLMFDCQRSMVISKATQRLGFIFKIAKDFNDPHCLKALYCSL
FT                 VRPILENASVVWCPHQVSWCLRIERVQKRFVRMALRNLPWRDPVNLPPYPE
FT                 RCQLLGLDTLQRRRKIQQALIIAKLINGEIDSPELRGMLNFRVPSRSLRNT
FT                 TLLEQRFHRTLFGYNEPMAACIRTFSMVEDLFDFDENIDKFAGKINRSRLF
FT                 "
XX
SQ   Sequence 4393 BP; 1181 A; 948 C; 998 G; 1266 T; 0 other;
     tctctggcaa cactgttgaa attagttgat tgttttttgt acgtggattt ttattacgat        60
     tttgatcgtg taatacgcat attatcagtt tcggtttata tacgttgtat tcgactatat       120
     cgtgaaatca gttgcatact ggagttttag tcgaaatagc cctcatcgta ctgtttttgc       180
     tgaccattac ccgaccaaat tggatatttt tggcgccatc caaccgttag caccagccac       240
     atctgtttag aattcgacgt cgttgtggtt caacgaagcg aacgaagctg gttctgcttt       300
     ccttgcttac gaaactaagg ataaaaacga agatggagaa aaaacattgc ggagagtgcc       360
     acctcgaaat caacgatttg gagcccgtac gttgtggttt atgtgaatct cctttccaca       420
     ttagccaaaa ttgttgtggc ttcaaccttc ggtcatgcaa agatgttttt gctcaaggca       480
     aggccgtgtt tgtttgcaca aaatgcaggg atgagctaaa cggcagaagc attcgtgcgt       540
     acattgccga tcaagcccat cgcaatgtat ctccaaccgc aagtgcagat aatatcaata       600
     cacagataca gcagctgtct ggtattgttg cggagctaag caggaaagta gataacattg       660
     cgaacatctc tacaccaaaa cttcctgttg tccgtgaaat gagaacgccc gtttggccgg       720
     ggttaggcat gaagcgccgc cgtggggaaa acggccaatc attggctcct gctgctgatc       780
     gaggcactgg cgccatggac ttcagtgatc tatccattcc ctttatcaca cctgccgctt       840
     cacctcctaa gttctggctg tatctctcgg gatttcaacc aaaaatcagt gacgatgacg       900
     tgcaaaagat tgttgcgcga tgtctggatt tgagagatcc atttgaggtc atccgtctag       960
     taccgaaagg tgcagatacc aagaacatga gtttcatctc gttcaaaatc ggccttgaac      1020
     tagctctcaa acagcaagcc ctcgatgcag cacgttggcc taccggcttg atgttcagag      1080
     aatttgtgga tttttcaaaa aacagacgtc cactatcctt cgcccgcgag ccgccagcag      1140
     ttacccctac tcaggagcaa ccaacgggga atccagaaac tattgtttga acacaccgcg      1200
     atgcttggag gaaggtggga gcccaagggc tctcaccaga ggcgagtatt ttgatgtttt      1260
     tacgtcttca cctgcattaa atcaatgtac attgcagcga atccctgacc acgactccga      1320
     tattatggtt tattaccaaa atgtacgagg attgcggacg aagattgacg atgtttttct      1380
     ggctgcccat gactgcgaat ttgatgcggt aatattcacg gaaactggac tagacgactg      1440
     catcacctcg ttgcaactgt ttggaacgac ttacaacgtt tttcgctgcg atcgttgccc      1500
     tcggaacagc aataaatctc ggtttggtgg cgttttgatt gctgtggccg agcagtacac      1560
     tagctgtaaa atcgatacaa cgagtgcacg gaatttggaa caaatttctg tctcgacgaa      1620
     tataaaaggc aaaaagttat ccttatgcgc tgtttacatc ccacctgatc gtagccagga      1680
     tctgagcgtc atcaacgagc atatcgcatc cgtgcaagaa ttgtgcaaca actgttcggc      1740
     aaacgaaacc gtgctcattt gtggtgattt caatcgacca cgcatgcgct gggttagaaa      1800
     tgacacggga ataatttgtg gtggttcact gttgccaccg actagccata cattgttgga      1860
     cggcatggaa ttccttggtt taggacaacg caatctcgag accaatttgc tcggtcgtac      1920
     acttgacctt gttttttgtc cgttggaatg tgaagctaca gtcggtggtt gttcgatgcc      1980
     aatgctgcca gtggattctc atcatccgcc gcttgccatt tctcttcaca cagatgttga      2040
     tgaagccctc tcgtctacgg ttggtgatag aatagcggtt cgcccactta attatcgatt      2100
     gatagatttt cctggtctat ctgatcgtct caacaatatt gactggacat cattgtttgc      2160
     atcgaaggaa gttgacgata tggcggaatg tttttgtggc gaaatcaatc ggtggcttga      2220
     aacgaatgta ccccgtgtaa gaccatcctt cactccagca tggagctctt cacggcttcg      2280
     ccagttgaaa cgggaacgaa acgcatgtca acgtaaactg caacggcggc gaaccaatgc      2340
     caatgctcgt atcttccatc gcgccgttaa tgcatatcgt catctaaatg ctagcctata      2400
     caaatcgtat gtgctcagaa tgcaatccag tctacgcagc aatccccgag gtttttggaa      2460
     tttcgttaat tcaaaacgga aaacgtcatc gataccatca aacgtatatt ttggtaatgc      2520
     gaccgcttcg tcgtctttgg agtcttgcga gctatttgcg aggcactttg caagcgtttt      2580
     ttcgagccat gtcacttcgc aacaagaggc ggagaatgta gcgtcaaacg taccctgtga      2640
     tttggttgat ttcggtattt tcgtcatcac tccggaaatg gtcgtaaaag cggcaaagaa      2700
     attaaagagt actttttctc ctggacctga cggattgcct gcagttgtca ttcgccgttg      2760
     catcactgtt ttggcgagac cgttgagtga tatttttaat cgatcgtttg aacaagctaa      2820
     gtttccagac atatggaagc aatcatttat gtgtcccatc ttcaagaatg gtgatcgacg      2880
     aaacgtagta aactaccgtg gcataaccag tttgtcagct tcttcgaagg tgtttgagat      2940
     aatcgttagc ggcgcaatgt tggaacgcac caagaactat atctcctttg accagcatgg      3000
     gtttatgcca gggagatccg tcacaacgaa cttgctgagc ttcacatcca aatgcatagc      3060
     tagcatggaa gcaagagcgc aaatggatgt aatatatacg gatctcaaag ctgcgttcga      3120
     caaaattgat catactatcc ttctatgcaa gttatctcgt ctcggctttt cgtcgcaact      3180
     ggtatgctgg ttgaactcat atctttttgg gagagttcta cgagtgaaac ttgataacgc      3240
     cgtgtcgaca ccgttctcga ataaatcggg tgttccgcaa ggaagtaatt tgggaccgct      3300
     actattcgca ctatttttca atgacgttgc actgtttttt gaagatggca gcaagctagt      3360
     ttatgcggac gatttcaaat tgttcctcga ggtacgatct atcgatgact gtttgcaact      3420
     gcaaagtcaa ctgcaagttt ttgttgcatg gtgtacgaaa aacaaactcg tcatcagtgt      3480
     tgcaaaatgc tacgtaatca cgttccatcg tacgcaacgt cctattgtat ttgactacaa      3540
     tattggcgga actattctga caagagtcag tgaagtgcac gatttgggcg tccagttgga      3600
     tgcgaaactc atgtttgatt gccaacgatc gatggtaatc tctaaagcta cgcaacggtt      3660
     gggattcatc tttaagatag ccaaggactt caatgatcca cattgcctga aggcattata      3720
     ttgttcactc gtccgtccga ttctcgagaa tgcttcggtg gtatggtgtc cgcatcaggt      3780
     ctcatggtgt ttgagaatcg aacgagtgca gaaacgtttt gtccgcatgg cgttacggaa      3840
     tttaccgtgg cgagatccag ttaacctgcc accatatccg gagaggtgtc aattgttagg      3900
     attggacacg ttgcaacgtc gacggaaaat tcaacaagcg ttgataattg caaaactcat      3960
     caatggagaa attgattccc cagagctgcg tggaatgctc aacttccgtg tcccgagcag      4020
     atcgctgcgg aatacaaccc tgctcgaaca aagatttcac agaaccctgt ttggttacaa      4080
     tgaaccgatg gcagcatgta ttcgaacgtt tagcatggtg gaagatctat tcgatttcga      4140
     tgagaatatt gataaatttg ctggaaaaat caaccgctca agactctttt gactctttgt      4200
     aatagtttat tttattattt gacatgtttt gtaatgtttt gtgatgagat gtattgtgat      4260
     atgatgtcca attgtgtttg tatttaattt tgtaagttta accagttaag tttatgtaga      4320
     ctataaagtc cgataaacag aatacctaat aaataaataa ataaataaaa taaataaata      4380
     atgcaaaaaa taa                                                         4393
//
ID   CR1_Ele31   repbase;    DNA;    INV; 4939 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele31.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4939
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4939
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 13
CC   sequences with >96% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           379..1191
FT                 /product="CR1_Ele31_1p"
FT                 /translation="MAKNCSKCSEAINGIDYVVCRGYCGAFFHMNACSGVT
FT                 RALLNYFTTNKKNLFWMCDKCAELFENSHFRTISTNADQTSPLNLLTTAIT
FT                 ELRTEIKQINAKPKAQFSPAVGWPSLTERRTTKRPFEQVVARASENCRVGS
FT                 KQPQANVVTVPVCQKEDNQFWLYISRIRPDVTTEAVQAMVKANLNVDDDPT
FT                 VVKLIPKEKDISTLTFVSFKIGLDPSMKPKALDPETWPEGLLFREFEDYGA
FT                 QKFRVPLKHRKPMTPSLSVSSPITPVMDLS"
FT   CDS           1089..4868
FT                 /product="CR1_Ele31_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RLWSPKISSTSEAQETNDTVTVSFFSHHTCNGPELST
FT                 INPGRTTLSTLEAPEPPSTVVSFLPALSSRPGPVFWSGEGVFQSVAIGKYS
FT                 FNIDNIVPDALVDSSQLLQFRHSSSGSIVAEEGCMPVSLMEASYPLISVES
FT                 VPPSFISHPCPEFECGEEVFQTTTTGKYAYSLNNYVPDYSGASSRSLYSCL
FT                 SGSARIVPAPGCTPASLMEAPNSLNTVEPFPPALRSHPGPVFENEEGVFQP
FT                 VNAGKFANVRNTALPVISIASSYQTPDDFRSIDDVIEINDRPCTGSTAPSS
FT                 SNLTPNVGTRLAGISSRTLSVYYQNVRGLRTKISRLRLLLSSCDYDVLVFT
FT                 ETWLRGDIESNEISPDYAFFRCDRSESSSQHLRGGGVLIAVKNYLKCEYFP
FT                 LDNCETLEQVAVRINLHHRTLYVIAVYLPPNSSQDLYTAHSCAVQLIADRL
FT                 MESDILLSAGDFNFPHLRWHLDEDINGYVPVNTSTDTELNFTEAMFASGLR
FT                 QINSFINTNGRLLDLMFTNLPEYLDVIAPCSPLLPVDSHHMPVIILLDESD
FT                 TQTFPDNLETCFRFDYSACDFELLNSVFENTDWGRSSNYATVDQMLSSFYE
FT                 SLAGVISRYVPRKRQAFISIYNKPWWNPELRHLRNILRKMRNRYFNTKNDH
FT                 DKTRLRDFEQQYKESLYASHESYLASIQRNVKQDPSRFWDFVKQRKAGIAI
FT                 PSSVSFDGVTAHSNTEVADLFATFFESVFSRASPVQRRDSFEQIPVHNITL
FT                 PFVQFSVEEVQNALEDLDSTKGPGTDNLPPLFWKNCAATLAMPITAVFNRS
FT                 LRDRRFPSAWKTASITPIHKSGSYNCVANYRGVSILCSLSKVFEKLIHAVL
FT                 YRAAAPIISNNQHGFMKHRSTTSNLMCYVSAVSRELESRRQIDAVYVDFAK
FT                 AFDSVPHDIICRKLSHLGFPAWLTDWLCSYLTDREAFVKVKSTRSRTFNIP
FT                 SGVPQGSVLGPLIFIIYVNDLYELLSSFNLSYADDLKIFRVIASSADCVEL
FT                 QEDINRLLIWCDDNGMRVNSKKCKVISFSRSNSISLHQYNMGLDFLERVDS
FT                 ICDLGVTIDSKLRFNEHISIITAKAFTVLGFIRRHASGFTDIYCLKTLFCS
FT                 LVRSILEYASPVWSPFYVKHNLAIERIQKSFLRFALRHLPWNDPINLPSYP
FT                 ERLKLINLESLSARRIRSQRLFIFDLITNNIDCPDLLELIPWNVPSRRLRN
FT                 SVLFVIPFHRSNFGYSNCFHMCLRSFNDVCDEFDFNMSKNVFSVRIRGLD"
XX
SQ   Sequence 4939 BP; 1308 A; 1144 C; 1028 G; 1459 T; 0 other;
     tggcaactct gttcgattgg atatatgtag gatctgaatc gtgaatattt tttattactt        60
     ttccgttagt catttatcgt ttttattcgt tattttcatc acggccgatc aattcagtgt       120
     ttcgtttcaa cgtgcgggtg ttgtatcgta tgataattgt gtatcaagtg cgttttcgcg       180
     atctatgaca cagctgtgat tgtgcacata aacaatactg caccataacc ctcgccgcga       240
     ttttttcgct cgaagcgaca tctgcgtatc aaaatcggaa tcgaatattg catgcgattg       300
     caaacttaac ttgtccaagt tcgtcattca acgaggagca tatcttgaat tggattgcat       360
     aaccgtaggc gcatcatcat ggcaaagaat tgctcaaaat gctcggaagc tattaatggc       420
     atcgattatg ttgtctgtcg tggatactgt ggtgcattct tccacatgaa tgcatgttca       480
     ggcgttacac gtgcgttgct taattatttc acgacaaaca agaaaaatct attttggatg       540
     tgcgacaagt gtgctgagct tttcgaaaac tcacatttcc gcactatttc gactaatgct       600
     gatcaaacat cgccactcaa tttgcttacc actgcaataa cggagttaag aaccgagatt       660
     aagcaaatca atgctaaacc taaagctcaa ttctcaccag ctgttggctg gccctcatta       720
     acggaacgaa ggacaactaa aagacctttt gagcaagtag tcgcacgtgc ttcggaaaat       780
     tgtcgtgttg gtagtaagca gccgcaggct aatgtcgtga cagtacctgt ttgccagaag       840
     gaagacaacc aattctggtt gtacatctcc cgaatccgac cggatgtgac cacagaagct       900
     gtgcaggcta tggtcaaagc aaatctcaat gttgatgatg accctactgt ggttaaattg       960
     attccgaaag agaaagacat tagtactctc acatttgtgt ctttcaaaat cggtctcgac      1020
     ccgtcaatga aaccaaaggc tcttgatcca gaaacatggc ctgagggctt attattccgt      1080
     gagtttgaag actatggagc ccaaaaattt cgagtacctc tgaagcacag gaaaccaatg      1140
     acaccgtcac tgtcagtttc ttctcccatc acacctgtaa tggacctgag ttaagcacca      1200
     tcaacccggg acgcactacg ttaagcactt tggaagcccc tgaaccaccc agcacagtcg      1260
     tgtcattcct gccagcgctc agcagtcgtc ccggccctgt gttctggtct ggagaggggg      1320
     tcttccagtc cgttgccata ggcaagtatt cattcaatat cgataatatt gtacctgatg      1380
     cgctcgtcga ttctagtcaa ctacttcaat tccgccattc atcatccgga tctatcgttg      1440
     ctgaagaggg atgcatgcct gttagcctca tggaagcctc ttatcccctc atctcagtcg      1500
     agtcagtccc gccatcgttc atcagtcatc cctgtcctga gtttgagtgc ggagaagagg      1560
     tcttccaaac aaccactaca ggcaagtacg catacagttt gaataattat gtacctgatt      1620
     attctggcgc ttccagtcgg tcattgtact cctgtttgtc tggctcagcg agaatcgttc      1680
     ctgccccggg atgcacgcct gcaagtctta tggaagcccc taattccctc aacacagtcg      1740
     agcccttccc gccagcgctc cgcagtcatc ccggtcctgt gtttgagaac gaagaagggg      1800
     tcttccaacc agttaatgca ggcaagtttg caaatgttag gaatactgct cttcctgtaa      1860
     tttccatcgc ttctagttac caaactccag atgatttccg atcaattgac gatgtgatcg      1920
     aaattaacga tcgtccttgc actgggtcca ctgcgccttc atcaagcaac ttaacaccca      1980
     atgttggcac cagattggca ggtatttcaa gtcgtacact ttcggtgtac taccaaaatg      2040
     tcagggggct acgcacgaaa atttcccggc tacgtttgct gttgtccagc tgcgactatg      2100
     atgtactcgt tttcaccgaa acttggctcc gaggtgatat cgaaagtaat gaaatttcgc      2160
     ctgattatgc tttctttcga tgcgatcgca gtgaatcaag cagtcagcat ttgcgaggcg      2220
     gcggagtact tattgccgtt aaaaactacc tgaaatgcga gtattttcca ctggacaact      2280
     gtgagaccct tgaacaagtc gccgttcgca taaatttgca tcatcgcacc ctctatgtga      2340
     tcgcagtgta tttgccacct aattcaagcc aagatctata tacagctcat tcatgtgcag      2400
     tacagcttat tgcggatcgt ctcatggagt ccgacatact gttatcggca ggagacttta      2460
     actttcctca tctgcgatgg catcttgacg aggatatcaa tggatacgtt ccagtaaata      2520
     cttcaactga caccgagctc aactttactg aagcaatgtt tgccagtggc ctgagacaga      2580
     taaatagctt catcaacacc aacggcagac ttttggacct catgtttacc aatctcccag      2640
     agtatctgga cgtaattgca ccttgttctc cgttgttacc ggttgatagc catcacatgc      2700
     cagtcattat tttacttgac gagagcgaca cgcaaacatt tcctgacaat cttgaaacgt      2760
     gttttagatt tgactattcg gcgtgtgatt ttgaactact gaactctgtt ttcgagaata      2820
     ctgactgggg acgatcatcg aattacgcta ctgtagatca gatgttatca tcattttacg      2880
     aatcgctagc tggagtgatt tctcgttacg ttcctcggaa acgacaagca tttatttcca      2940
     tttacaacaa accatggtgg aatccagagc ttcgtcacct tcgtaatatt ctccgtaaga      3000
     tgcgcaaccg ctattttaat acgaaaaacg atcacgataa gactagactg cgtgactttg      3060
     agcagcagta caaagaaagt ctttacgcat cacatgaaag ctatttagca agcatccaaa      3120
     gaaacgtcaa gcaggatcct tcccgtttct gggattttgt aaagcaacgc aaggcaggta      3180
     ttgccattcc gagctctgtc tctttcgatg gagtcaccgc ccattcaaac accgaagttg      3240
     ccgatctctt cgccaccttt ttcgagagtg tttttagtag agcatcgccc gttcaacgtc      3300
     gtgatagttt cgagcagata ccagttcata acataactct accgttcgtt cagttttctg      3360
     tagaggaagt tcagaatgct cttgaagatc tggattctac aaaaggacct ggtacagaca      3420
     atctgccccc tttgttctgg aagaactgtg cagctacgct cgcaatgcct attactgctg      3480
     ttttcaaccg ctcgcttcgt gacaggaggt ttccaagtgc gtggaagacg gcatctataa      3540
     caccgattca caagtccgga agctacaatt gtgtcgcaaa ttatcgcggg gtgtctatac      3600
     tttgcagcct aagcaaagtg tttgagaagc tgatacacgc agttttgtac cgagctgctg      3660
     ctccgatcat ctctaacaac cagcatggct tcatgaagca ccgctccaca acatcgaacc      3720
     ttatgtgcta tgtgtcagct gtatcccgtg aacttgaatc aaggcggcaa atcgatgcag      3780
     tgtatgtaga ttttgcaaaa gcttttgatt cagtaccgca tgatatcatc tgcagaaaac      3840
     tcagtcatct tggttttccg gcgtggctta ctgactggct ttgctcctac ttaaccgatc      3900
     gtgaagcttt cgtgaaagtg aaatccacac gctccaggac attcaatatt ccatccggcg      3960
     tcccgcaagg aagtgtcctc ggtccgttga tttttatcat ttatgtaaac gacctttatg      4020
     agctgctttc ttcatttaat ctttcatatg cggatgactt aaaaattttc cgtgtgattg      4080
     cctcctctgc agattgtgtc gaactacaag aagacataaa tcgactgctt atctggtgcg      4140
     acgataatgg catgcgcgta aacagtaaaa agtgcaaagt aatttccttc tcacgatcca      4200
     atagcatttc gctccatcag tataacatgg gactagattt tttggaaagg gttgactcaa      4260
     tatgtgatct gggtgttacg attgactcaa aattgagatt taacgagcac ataagcatca      4320
     taactgccaa agcatttacc gtgcttggtt tcatccgtcg ccatgcttcc ggttttaccg      4380
     atatttattg tcttaagacg ttattctgtt ctctagtacg cagcattctt gagtatgcat      4440
     caccggtttg gtcgccattc tacgtaaagc ataatctggc aattgaacgt atccaaaaaa      4500
     gctttttaag gtttgctttg cgtcatcttc cttggaatga tccgataaac ttaccgagct      4560
     atccggaaag acttaagtta attaacttag aatctctctc tgcaaggcgc atcagatcgc      4620
     agagattgtt tatttttgac ctcatcacaa acaatataga ctgccctgat ctgttagaat      4680
     tgattccgtg gaatgttcct tccagacgtc ttcgtaattc agtgttattc gtgattcctt      4740
     tccatagatc taattttgga tacagcaact gttttcatat gtgtttgcgt tcgttcaatg      4800
     atgtttgtga cgagtttgat tttaatatgt ccaaaaatgt attcagtgtt agaataagag      4860
     gtttagatta agtagttatt aagaaatcag tctgtacggc gtagccgaag atggtgcata      4920
     aataaataaa taaataaat                                                   4939
//
ID   CR1_Ele32   repbase;    DNA;    INV; 2908 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele32.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2908
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2908
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 21
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2837
FT                 /product="CR1_Ele32_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="LRTKIDALYCNAIDCNYDVIILIETGLDAAINSVQLF
FT                 GDNFNVFRCDRNAKNSTKSSFGGVLIAVHRRFTSSSISITTGESLEQVCVS
FT                 VLVGNQRILLCAIYIPPDKSKDVNVMDEHIESVRELRNLSSGNDYLLVFGD
FT                 YNQPELCWKRCGDEIRPTNSGSISAASSSLIDGMDFCNLHQMNIERNHLNR
FT                 TLDLVFTSLELSPEITCSVAPLLPTDQHHPPLELDLMLPNGVNNVPTVSNA
FT                 TGELDFTKIDFEALSLFLSETVWHVLLDGLTADNMAETFCSVIANWLNTNV
FT                 PTRRPAVSPVWGTPLLRNLKRRRNALQRRLRRHRSLENIRSFHRACDEYRE
FT                 LNSSLYKSYVLRVQSNLQRNPKQFWNYVNSKRKSSTIPMSVFLNDSVSSSP
FT                 LEKCELFAAHFSSVFDAKPASPSEVDSAVSDVPRDLLDLDIFQITPAMVSQ
FT                 AAKKLKCTFSPGPDGIPSAVYCRCMSALAEPLCRIFNQSFVDSTFPAIWKQ
FT                 SFLVPVHKKGEKRNVINYRGITSLSAASKLFEMIVSDVILAQAKGYISIDQ
FT                 HGFMPGRSVTTNLLDFSTTCFEQLENGAQVDVIYTDLKAAFDTINHDILLA
FT                 KISKLGASNRLSSWLLSYLTGRTLRVKVDSCMSSSFTSMSGVPQGSNLGPL
FT                 LFLLFFNDVMLLLGHGCRLAYADDLKLYFVVRTVEDCVRLQALLDMFVDWC
FT                 RRNRMTLSVPKCIVVSFYRITRPIMHNYVVNDVVLKRADSFCDLGVLLDHK
FT                 LTFNLHRSNVIAKANRQLGFIAKISRDFTDPHCLKALYCSLIRPILESAAV
FT                 VWTPYQLSWSLRLESVQRKFMRLALRNLPWRDPLNLPPYPDRCRLLDLDTL
FT                 DRRRKTQQVAFIAKLMNGEVDCSRLLSMLNFRVAPRVLRGGALLQQRFHRT
FT                 AFGSNEPFTSMIRLFSMFEDLYDFDGSSNQFVSRVRSSDLI"
XX
SQ   Sequence 2908 BP; 729 A; 665 C; 655 G; 858 T; 1 other;
     ggctgcgcac taaaatcgat gcactgtact gtaacgccat tgactgcaat tatgacgtaa        60
     tcattctgat cgaaacagga cttgacgcag ctatcaactc tgtacagctt tttggagata       120
     attttaatgt gtttcgctgt gatcgaaatg ccaagaatag taccaaatcg agctttggag       180
     gagttcttat tgccgttcat cgccgtttta ccagctccag catcagcatt accactggtg       240
     aatcgcttga acaggtttgc gtgtctgtac tggtaggcaa ccaacggata ctcctgtgcg       300
     caatttacat tccaccagac aaaagcaagg atgtcaacgt tatggatgag cacattgaat       360
     cggttcgtga actacgaaac ttaagcagtg gtaatgacta tctgctggtt tttggcgact       420
     acaatcagcc tgaattatgc tggaagcggt gtggcgatga gattcgtccc actaatagtg       480
     gatctatatc agcggctagt tcatcgctaa ttgatggcat ggatttctgc aatcttcatc       540
     agatgaacat cgagcgcaac cacctgaatc ggactctaga tttggttttc acctctttgg       600
     aattatcacc cgaaattaca tgttccgtcg caccgctttt accaactgat cagcatcatc       660
     ctccattgga gcttgaccta atgctaccta atggagtcaa taatgtgccc accgtcagca       720
     atgcaactgg ggaattggat tttacgaaga tcgattttga ggctctctcg cttttcctgt       780
     ccgaaactgt ttggcatgtt cttctggacg ggttgacggc cgacaatatg gctgaaacat       840
     tctgctccgt catagcgaat tggttgaaca caaatgttcc aactcgtcgc cctgcggtct       900
     ctccggtatg gggcactcca cttttgagaa acctgaaacg acgtcgcaat gctcttcaac       960
     gtagactccg tcgccaccga tcgcttgaaa atatacgcag ctttcatcgc gcctgtgatg      1020
     agtatcggga actcaattcg tctctttaca agtcatatgt gttgcgagta caatcaaacc      1080
     ttcagcgaaa tccaaaacag ttttggaact acgtgaattc caaaaggaaa agctcgacca      1140
     taccgatgag tgttttcctg aacgattccg tttcctcgtc acctttggag aaatgtgaac      1200
     tttttgccgc ccacttctca tctgtattcg atgcgaaacc cgcatcccca tctgaggtgg      1260
     attctgctgt atcagatgtc cctagggacc ttttagatct ggatattttc caaattacgc      1320
     ctgccatggt ctcgcaagct gccaaaaaat tgaaatgcac mttttcacct ggtccggacg      1380
     gtattccttc agccgtatat tgtcgatgca tgagtgcttt ggctgagcca ctatgccgga      1440
     ttttcaatca atcttttgtt gattcgactt tccccgcgat ttggaaacag tcattcctgg      1500
     ttccggtaca taaaaagggc gagaaacgga atgtaattaa ctatagaggt atcactagcc      1560
     tttctgctgc atcgaagttg ttcgagatga tcgtgagcga tgttatattg gcgcaagcca      1620
     aaggctatat ttccattgat cagcatggct tcatgcctgg acgctcagtg acgacgaatc      1680
     tgcttgactt ttcaacgacc tgctttgaac aattggaaaa tggtgctcaa gtcgacgtga      1740
     tttatactga tcttaaagca gcgttcgata caattaacca cgacattctg ctggcgaaaa      1800
     tatccaaact aggcgcgtcg aatcgactat catcatggtt actctcctat ttaaccggaa      1860
     gaacgctgcg agtcaaggtc gattcctgta tgtcgtcgag ctttacaagt atgtctggag      1920
     tgccgcaggg cagtaacctg ggtccactcc tgtttctttt atttttcaac gacgtgatgc      1980
     tgcttctagg gcatggttgc aggcttgcat atgctgacga tcttaagttg tactttgtcg      2040
     tacgcacagt ggaagactgc gttcgtctgc aagccttgtt ggatatgttt gttgattggt      2100
     gtagacggaa ccgtatgacg ctgagtgtac ccaaatgtat agttgtgtcg ttctatcgaa      2160
     taactcgacc gattatgcac aattatgttg taaatgacgt cgttcttaag agagccgata      2220
     gtttttgcga tttgggagtc ttgctggacc acaagctcac gtttaatctg catcgatcca      2280
     atgtaattgc gaaagctaac cgtcagctgg gatttatagc aaaaatctcc cgggatttca      2340
     ctgatccgca ttgtctgaaa gctctttatt gctcactcat acgacctatt ttagagagtg      2400
     ccgctgtagt gtggacccct tatcaactat cgtggagctt gaggttagaa agcgtgcaac      2460
     ggaagtttat gcgactagca ctgcggaacc ttccttggcg tgatccgctg aatctgccgc      2520
     catatccgga tcgctgtagg ctgcttgatt tggatacgct ggatcgtcga cgcaaaaccc      2580
     aacaagttgc ttttatagcc aaactcatga acggcgaagt tgactgctcc cgattgctct      2640
     cgatgctgaa tttccgtgtc gctccaaggg ttctacgtgg cggcgccctt ctgcagcaaa      2700
     gatttcatcg tactgctttt ggaagtaacg agccttttac gtcgatgatc cgtttatttt      2760
     ctatgtttga agatctctat gacttcgatg gttcgtccaa ccaattcgtt tcgcgtgtga      2820
     ggagctcgga cttaatatag gatttagttt caattcatgt agacaaaagt cagatggata      2880
     atatacaaat atacaaatat acaaatat                                         2908
//
ID   CR1_Ele33   repbase;    DNA;    INV; 5332 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele33.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5332
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5332
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1225
FT                 /product="CR1_Ele33_1p"
FT                 /translation="MAKNCGTCSKAINGIDVVVCRGYCGGFFHLNECSGVT
FT                 RAMQSYFTSNRKNLFWMCDNCAELFENSHFRVISNQADEKSPLNSLASAIT
FT                 ELRTEIRQLHAKPVAYPSPAESPRWPSFDQRRGTKRPRIIETNVRAQDSCR
FT                 VGSKKAEENVVSVAICKSEADNRFWLYLSKIRPDVTTEAVCEMTKANLNME
FT                 NDPIVVKLVPKGKQIESLSFVSFKIGLDPLLKRKALDPETWPEGLLFREFV
FT                 DYSASKFRSTLNMNTRMTPLLQPQTPVSSVTPVMDLS"
FT   CDS           1264..5238
FT                 /product="CR1_Ele33_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPYSPNTVPFFLPTLISRPVPVFGCEEGVFQTVSI
FT                 GKYTCDVNKTLPVKSSNSSNTSPNYICSRSRHQKHVTIMNNQPSSSIELST
FT                 HTESPGCTPASLKGAPNPLVTVEPLLPAFSSHPGPVYEFGGGVFRPAIAGK
FT                 YTCNKNFNLPVNPVDSSNAMSIASPPSSSSSSTILSCSSHAEPPGCTPASL
FT                 KGAPNPLVTVEPLLPAISSHPGPVYEFGEGVFRPAIAGKYTCNKNFNLPVN
FT                 SVDSSNATSIASLPXSSSSSTILTCSSHAESPGCTPASLMEAPNPLVTVEP
FT                 LLPAFYSHPGPVYENGEGVFQPAQAGKYSQAPTYALPDATEHSSTLGRQED
FT                 IMLPPHAVQSPNADAIEIIENSNVMVGNGADRLLSIYYQNVRGLRTKIVQL
FT                 RLLLSSCDYDVLIFTETWLRADIESSEISTDYTFFRCDRNERTSHHSRGGG
FT                 VLIAVKNRLNCDSIEMTNYERLEQIVVCIRFQKHSLYIAAIYLPPNSIPEL
FT                 YAKHADAMQFIVEQAEATDIVMSIGDFNLPNLCWQQDDDINGLIPTNVTAE
FT                 HEQSLIEAMFAVGFRQINSLVNSNSRLLDLAFINLPERVDLTAPSSPLLPM
FT                 DIHHPPFILLLCENDELLNLADDENYEVKFNFEVCDFELLSDIFGSTDWNA
FT                 LLGNTNLEAMLSAFYQKLNSVFGEHVPKTRRNTRSIFNKPWWTPELRNQRN
FT                 NLRKARKRFFQSRDDCDRSHLQEIEIRYKTLLLSTYESYISTVQSSLKQNP
FT                 SRFWEFVKNLQSSNRIPPSVTYNGIEAHNTSEAADLFAEFFESVFSKVSPV
FT                 QRSNIFAHLQEHDFSFPDLQFSPDEVLEALRDLDIKKGPGTDGIPPLVIRN
FT                 CAAALCIPITCIFNCSLRERTFPAAWKMAYIVPVYKSGSRNHVSNYRGISI
FT                 LCCLSKILEKLIHKTLSNTLTSIISESQHGFMKNRSTTTNLMSYVSTLFRE
FT                 VEARQQVDSIYVDFAKAFDTVPHIVVIEKFKRLGFPRWLTEWLYSYLTNRY
FT                 AFVMVNSTRSRTFNITSGVPQGSVLGPLIFNVFINDLYSLLSSCNLSFADD
FT                 LKFYRTISSPQDCIALQEDIDIMLIWCDNNGMRVNSGKCKIISFTRCNTSY
FT                 QHRYFIGAEELVRVNSICDLGVTIDFKVRFNEHIGLTVAKAFSVLGMIRRH
FT                 TNSFTDVYALKTLYCSLVRSILEYASPVWCPSQVTQILSIERVQKKFLRFA
FT                 LSRLPWNDARNLPSYHERCQLIRLESLSARRTNQQRLFIFDLIKGGIDCPA
FT                 LLELLSFNAPSRRFRNAVLLYIPNHRTNYGYNSSLSSCLRAFNDVGDKFDF
FT                 DVTKNIFLNRIRN"
XX
SQ   Sequence 5332 BP; 1492 A; 1276 C; 1105 G; 1457 T; 2 other;
     tctggcatca ctgcttatgt atgtatgcaa gccaatttcg gtctcgtaat ttatattcgc        60
     ttttaacgtt aacttggaag tgtaaaatcg tagttttgat ttaatcgtcc gtctgtgtat       120
     tctctgaaga aaattagtgg acttttatgt gctagtgtga cgtgcattag tgattaattc       180
     ctatttgacg agtgatttgt tttgctcgtt ctggttctgc cattcatcaa acgcttactg       240
     cccatcgcgc cgaattattt ttcacctgaa gtgacatcta ccagcattca tcgcaaactg       300
     gtgctaagcg ttgcttatcc gcttatttgt gctttcgggt accgctactg ttcaaaagtg       360
     ttccaggaaa catacccata ggcgcatcga gatggctaaa aattgtggaa catgctcaaa       420
     agctatcaac ggcattgacg tggtagtgtg ccgtggttac tgtggaggat tttttcattt       480
     gaatgaatgc tctggggtaa caagagcgat gcaatcgtac ttcacatcaa acagaaaaaa       540
     ccttttctgg atgtgcgata actgcgccga attgtttgag aactcccatt tcagagtaat       600
     ctcaaatcaa gctgatgaga aatctcctct caactcgctt gcatcggcta ttactgagct       660
     gcgtacggaa attagacaac tgcatgcaaa gccagtagcc tatccatctc cagcagaatc       720
     accgcgctgg ccttcttttg atcaaagaag aggtaccaag cgtccccgta taatcgaaac       780
     gaatgtgcgc gcccaggata gctgtcgtgt tggtagtaaa aaggcagaag agaacgttgt       840
     atcagtcgcg atatgtaaat ctgaagcaga taatagattt tggctatatc tgtctaaaat       900
     tcgcccagac gtcacaacgg aagctgtatg tgaaatgacg aaagctaatc tcaatatgga       960
     aaacgatccg atagtggtta aattagtacc gaaaggaaaa caaatcgaat cactttcttt      1020
     cgtctccttt aaaattggcc tggacccgtt actcaaacga aaggcacttg accctgaaac      1080
     ttggcctgaa ggactgctgt tccgagaatt cgtcgactat agtgcctcaa aatttcgatc      1140
     tacgctgaat atgaacacga gaatgactcc gttgctacaa cctcaaacgc cggtatcttc      1200
     agtgacccct gttatggacc tgagctaacc ttcatcaacc caggacgcaa aagtattaga      1260
     actatggaag ccccgtattc ccccaacaca gtcccgtttt tcctgcctac gctcatcagt      1320
     cgtcctgttc ctgtgtttgg gtgcgaagaa ggggtcttcc aaaccgtctc aattggcaag      1380
     tacacatgcg atgtgaacaa aactcttccg gtaaagtcat ccaattctag caacacgtca      1440
     ccaaactaca tctgttcgag atcacgccat caaaaacatg ttacaatcat gaataatcaa      1500
     ccatcatcgt ccatcgagct ttcaacacac accgagtcac cgggatgcac gcctgccagt      1560
     ctcaagggag cccctaatcc tctcgtcaca gtcgagccac tcctgccagc gttcagcagc      1620
     catcccggtc ctgtgtacga gtttggaggg ggggtcttcc gacccgcaat tgcaggcaag      1680
     tatacgtgca ataagaattt caacctcccg gtaaatcccg tcgattctag caacgcaatg      1740
     tccatcgcaa gcccaccatc atcatcatcc tcatcaacaa tcctatcctg ttcatcacac      1800
     gccgagccac cgggatgcac gcctgccagt ctcaagggag cccctaatcc tctcgtcaca      1860
     gtcgagccac tcctgccagc gatcagcagc catcccggtc ctgtgtacga gtttggagag      1920
     ggggtcttcc gacccgcaat tgcaggcaag tatacgtgca ataagaattt caacctcccg      1980
     gtaaattccg tcgattctag caacgcaack tccatcgcaa gcctaccawc gtcatcatct      2040
     tcatcaacaa tcctaacctg ttcatcacac gccgagtcac cgggatgcac gcctgcaagt      2100
     ctaatggaag cccctaatcc cctcgtcaca gtcgagccac tcctgccagc gttctacagc      2160
     catcccggtc ctgtgtacga gaatggagag ggggtcttcc aacccgctca agcaggcaag      2220
     tactctcaag ccccgacata tgctctacct gatgcgactg aacattccag cactttaggc      2280
     cgtcaggaag acattatgct acctccacac gccgttcaat cacctaacgc agatgctatt      2340
     gaaatcattg aaaattcaaa cgttatggta gggaacggtg ctgatcgcct tctctccatc      2400
     tactatcaga atgttagagg cttacgaact aaaatagttc aactgcgctt gctgctcagt      2460
     agctgtgact atgatgtttt aatattcaca gagacatggt tgcgtgcgga tatcgaaagc      2520
     agtgaaattt caactgacta cacttttttc cgatgtgatc gcaatgaacg tactagtcat      2580
     cattcacgcg gtggtggagt gctcattgca gtcaagaaca gattgaactg cgattcaatc      2640
     gaaatgacaa actacgagag actcgaacaa attgttgttt gtatcaggtt tcaaaaacat      2700
     tctctctata ttgctgccat ctatcttcca ccaaactcga tccccgagct gtacgccaaa      2760
     catgctgatg caatgcaatt tatcgttgaa caagcagaag cgactgacat tgttatgtcg      2820
     attggtgatt tcaatttacc caacctatgc tggcagcagg atgacgacat aaatggcctc      2880
     attccaacga atgttactgc tgaacatgaa caaagtttaa ttgaagctat gttcgctgtt      2940
     ggctttcgac aaatcaatag tctcgttaat tcaaatagta gacttcttga tttagctttc      3000
     atcaatcttc ctgaacgcgt agacttgact gctccttctt caccgttgtt gccgatggac      3060
     atccatcatc caccgtttat ccttttgctc tgtgagaacg acgaacttct gaacctagcg      3120
     gacgacgaaa attacgaagt caagttcaat ttcgaagtat gtgattttga gctcttgagt      3180
     gacatttttg gaagtacaga ttggaatgct ttgcttggaa atacgaatct tgaagcgatg      3240
     ttatcagcct tttaccaaaa actgaacagt gtattcggtg aacacgtgcc aaagacaaga      3300
     cgtaacacga gatcgatttt taataaaccc tggtggactc ccgagctacg caaccaacgt      3360
     aacaacctca gaaaagcacg gaaacgcttc tttcaatcaa gggacgattg cgacagaagt      3420
     catcttcaag aaattgagat acggtataaa acgctacttt tatccaccta cgagagctac      3480
     atttctacag tacagtcaag tctcaagcaa aacccgtctc gattttggga attcgtgaaa      3540
     aatcttcaat ctagtaatcg cattcctccg agcgtaacat ataacggaat tgaagctcac      3600
     aacacttcgg aagccgctga tctatttgca gagttctttg aaagtgtatt cagcaaagta      3660
     tcgcctgtgc agcgttcgaa tatttttgca cacttgcaag agcatgattt ttcatttcct      3720
     gatttacaat tttcaccgga tgaagtccta gaagctctac gtgatctgga tataaaaaaa      3780
     gggcccggaa ccgatggtat tcctcccctg gtaataagga attgcgctgc tgcattgtgt      3840
     attccaataa catgcatttt caattgttcc cttcgcgaaa ggacatttcc ggctgcatgg      3900
     aaaatggcct acattgttcc ggtttacaaa tccgggagcc gtaatcatgt ttctaattat      3960
     cggggtatat ccatactatg ctgtctttcg aaaattctgg agaagttgat tcacaaaact      4020
     ctgagcaaca cactgacatc gatcatctcc gaaagtcaac atggattcat gaaaaatcgc      4080
     tcaacgacaa cgaacctaat gagctatgta tcgacgttgt ttcgggaagt ggaagcaagg      4140
     caacaggttg actctattta cgtagacttt gccaaagcat tcgacacggt gccgcatatt      4200
     gtggtgatcg agaagttcaa gcgcttgggc tttccacgat ggctcaccga gtggctctac      4260
     tcatatctaa cgaaccgata cgcctttgtg atggtcaact caacgcgttc tcgtacgttc      4320
     aacattacgt ccggagttcc acaaggaagt gttttggggc cacttatatt caacgtcttc      4380
     ataaacgact tgtattcgtt gctctcttca tgcaatctgt cgttcgcgga tgatctgaaa      4440
     ttctaccgca ccatatcatc tcctcaggac tgcatcgccc tccaggagga catcgacatc      4500
     atgctcatct ggtgcgacaa caacggcatg cgcgtgaata gcgggaaatg taaaataatt      4560
     tcgtttactc gctgtaacac ctcttaccag catcggtact tcatcggggc ggaggagcta      4620
     gtccgcgtta attcaatttg cgaccttggt gttacgatag atttcaaggt gagatttaac      4680
     gagcacatcg ggctgactgt cgccaaagca ttctccgttc taggaatgat tcgaaggcac      4740
     accaactctt tcacagatgt ttacgcctta aaaacgctgt actgttcttt ggtgcggagc      4800
     atcttagaat atgcctctcc tgtctggtgt ccatctcagg ttacgcagat actttcaata      4860
     gaacgagtgc agaaaaaatt cctgaggttt gcgctgagta ggctaccgtg gaacgatgca      4920
     aggaatttgc cgagctacca tgaacgatgc cagctgataa gattggaatc tttgtcagcc      4980
     agacgtacca atcagcaacg tttgttcata ttcgacctga tcaaaggggg aatagattgc      5040
     cctgcactac tggagctgct gagtttcaat gctccttcta gaagatttcg gaacgctgtt      5100
     cttctgtata taccaaatca tcggactaac tatggttata acagctcctt gagttcttgc      5160
     ttgcgagcat tcaacgatgt tggagacaaa tttgattttg acgtgacgaa gaacatattt      5220
     ttaaatagaa taagaaattg attttacttt ttttatatac taaattcagt ctgtacgata      5280
     tatcgaagac ggtgtaaata aataaataaa taaataaata aataaataaa aa              5332
//
ID   CR1_Ele34   repbase;    DNA;    INV; 5032 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele34.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5032
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5032
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 22
CC   sequences with >93% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           434..1222
FT                 /product="CR1_Ele34_1p"
FT                 /translation="MACNKCQETIADTERIICRGYCGHSFHLTCVRMDHSF
FT                 RDVQVAHERNVFWMCDGCADLFSSDHFRKISSRYSNEIVHDEASIKCLKDD
FT                 IAELKQIVGLLSSKVEAKPTTPIMSTPWSGLNRMRSSSNVPNTPKRQRVES
FT                 LPMERPTIIRGSKAASELVKTVSPPEELFWLYLSAFDPCTSEXDVSNFVRN
FT                 CMGLSAEVEPKVVKLVPKDKDPATLNFVTFKVGMKLSLKTSALSKETWPEN
FT                 IYFREFENQPKNQRKIVRVTAE"
FT   CDS           1438..4902
FT                 /product="CR1_Ele34_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFVVSSSPASISFHRTSTFGSPGRTPASSLLEASDSP
FT                 NTVVPLLPATCSRPGPVFGSEEEVFQHSSAGKYITPTNYSLPEIFVVSSSS
FT                 MSNDSCCTSSFLPPGRMPAPSLLEASDSPSTVEPLLPATCSRPGPVCGSEE
FT                 EVFQNPTAGKYTVPPLSCSRTEIRVVSSFYDDAPTATPASSCSIAHPTNQD
FT                 ITIYYQNVGGMNSDIDDFRVAISDHCYDIIVFTETWLDSRTLSHQIFGNAY
FT                 EVFRCDRNADNSRKTTGGGVLVAVNSRLKTKKVESPSWVCLEQVWTSIKLG
FT                 DRSLFLCALYIAPDRIRDRELIETHCQSVYSVLESTKAKDEVIVLGDFNMP
FT                 GISWEKSSNGFLHPDIGHSVIHSNASFLLDNYSSATLSQINHVTNQNNRRL
FT                 DLCFVSTQDTAPFLCEAPVPLVKLTLHHPPLLLAIGSKLPHDYVISPNVVY
FT                 YDFRKADHRGIAQLLSGFDWSVILDSDDIEEAAQTFSNVLSYVLDRHVPKK
FT                 VQHHSFRPPWQTSELRRLKSKKRAALKKFTTHRTPLLKRHYARVNNEYKQA
FT                 AKDCFLRYQRGIQTKLKYRPKQFWKHVDEQRREAGLPSCMSLNGNVASSPQ
FT                 DICNLFADKFASVFNDEILSDEHITLAAANVPQFGQTLSSVDINEDMIIRA
FT                 SSKLKTSYNPGPDGVPSSFLKTHMRDLISPLLHVFRLSLTLGVFPSTWKLA
FT                 HMFPVHKSGNKHDVGNYRGITSLCAVAKLFELVMMEPLLAHCKPYISVDQH
FT                 GFVTGRSTATNLLCLTSYITESMSKRFQTDVIYTDLTAAFDKLNHNVAVAK
FT                 LDRLGIHGCFLQWLQSYLTGRHLAVLIGDCYSSSFAATSGIPQGSHLGPXI
FT                 FLIYFNDVNLVIEGPRLSYADDLKLYLRIRSIDDCYFLHQQLNAFADWCNL
FT                 NRMEVNPAKCSVISFSRKKQHILHSYTLSGEVIKRVSQVKDLGVILDAQLS
FT                 FKQHVDYAVGKASRVLGFIFRTAKEFTDIYCLKSLYCSLSRSILEYCSVVW
FT                 TPHYNNGVLRIESVQRRFLRYALRRLPWSDPFRLPSYQSRCQLIDLESLSV
FT                 RRDTARALLLSDVLQGRIDCPYILNEININVQPRALRNRSMLRLPLQRTNY
FT                 STHGAINGMQRVFNRVATLFDFNLSRHSLRTRFSSFFFKCFLICPFL"
XX
SQ   Sequence 5032 BP; 1277 A; 1269 C; 1084 G; 1395 T; 7 other;
     ttggcaacac tgttaagcaa atagtcgtgt tagtacggag ctcatattta tttatgtttt        60
     taattgtgtt tatcgcgttt aaattcgacc cgtattgtgc cttcgcgagt ccgtagtttc       120
     ggttctccac catcagtata gtgcagtgca cgaaccgttt taaagtgtgg aattttgtgg       180
     atgctagttg gcgataattt atcatcagaa gtgtttgtga ctacctcmtt cacttcmcag       240
     cccttcgctc attttatcct ccaaagtgac atctggcggg aataatcgga acctttgcga       300
     ttgcatgcaa catcgatcma tcaccgaaag cttacttcaa tacacgtgaa ctttgctggt       360
     tgcatacccg taggcgaatc gctctgaaat agtccaacag ttttccgtcc tgtttcacgg       420
     ttctacgacc gcaatggctt gcaacaagtg tcaagaaacg atcgctgata cggaacgaat       480
     catttgtcga ggatattgcg gacactcgtt ccacttgacc tgcgtgagga tggatcattc       540
     tttcagagat gttcaggtgg cccatgaaag aaatgtattt tggatgtgtg atggttgtgc       600
     cgacttgttt agtagcgatc attttcggaa aatctcgtca cgttattcta acgaaattgt       660
     tcatgacgag gcatctatca aatgtctcaa ggacgatatc gcagagttga agcaaatcgt       720
     tggactttta tcttccaagg tcgaagccaa accgaccaca cctataatgt ctacaccgtg       780
     gtcaggattg aatcggatga gaagttcgag caatgtcccg aacacgccaa aaaggcaacg       840
     cgtggagagt ctacctatgg aaaggccaac gattattcgc ggatctaaag cagcatccga       900
     attggtaaaa acagtttcac caccggagga gttgttctgg ctgtatttat ctgctttcga       960
     tccctgcaca tccgaastgg atgtttccaa tttcgttagg aattgtatgg gattatctgc      1020
     mgaggtggag cccaaagtcg tgaaactggt tccaaaagat aaagacccag caaccctcaa      1080
     cttcgttacc ttcaaagttg gtatgaaatt atcgctcaag acatctgcac tatccaagga      1140
     aacctggccg gaaaatattt acttccgtga gtttgaaaac cagccaaaaa accaacggaa      1200
     aatcgtcaga gtgacagcgg agtagtgcca acttggaaag ctacgactca gcgatgggaa      1260
     ccgggacgca cacttgccct cagtagtttg gaagcctctc acccacccac cacagtcgag      1320
     cccctcctgc cagcgaccca cagccgtccc ggtcctgtgt gtggatttgg ggaagaggtc      1380
     ttccgaaatt cgaattcagg caagtacwtc gctctattga acaattcgtc cgctgaaatg      1440
     tttgtagttt ccagttctcc agcatcaatc agcttccatc gtacttcaac attcggatca      1500
     ccgggacgca cgcctgcctc tagcctcttg gaagcctctg actcgcccaa cacagtcgtg      1560
     cctctcctgc cagcgacctg cagccgtccc ggtcctgtgt ttgggtctga ggaggaggtc      1620
     ttccaacatt catcagcagg caagtatatc actcccacga actattcgtt gcctgagata      1680
     ttcgtagttt ccagttcatc catgtcaaat gattcctgtt gtacatcttc gttcctgcca      1740
     ccgggacgca tgcctgcccc tagtctcttg gaagcctctg actcgccctc cacagtcgag      1800
     cccctcctgc cagcgacctg cagccgtccc ggtcctgtgt gtggttctga ggaagaggtc      1860
     ttccaaaacc caacggcagg caagtatacc gtccctccgc tgagctgttc tcgcactgaa      1920
     atacgtgttg tttccagctt ctacgacgat gccccgactg ccactccggc ttcttcatgc      1980
     tccatagccc atccgaccaa tcaagacatc accatctact accaaaacgt cggcggtatg      2040
     aacagtgata ttgacgattt ccgagtggcc atttccgatc attgctacga cataattgtc      2100
     ttcacggaga cctggttgga ttcacgcacg ctctctcacc aaatattcgg taacgcttac      2160
     gaggtcttcc gctgcgacag gaacgcagac aatagccgga aaacaacagg tggaggcgta      2220
     ttagtagccg ttaactctag acttaaaacg aaaaaagtcg aaagtccctc ttgggtctgc      2280
     ttggagcagg tctggacttc gattaaactc ggtgatcgaa gcttgtttct ctgcgcattg      2340
     tacattgctc ctgatcgtat acgtgatcgc gaactcatcg aaacgcattg tcagtcggtc      2400
     tactccgtat tggaatccac caaagcaaag gacgaagtta tcgtgttagg tgacttcaat      2460
     atgccgggga tttcgtggga aaaatcaagc aatggtttcc tccatccaga tatcggtcat      2520
     tccgtcattc attccaacgc ttcctttctt ttggacaact atagttctgc cacactctcc      2580
     caaatcaacc acgtcactaa tcagaataat cgccgcctag atctttgctt cgtgagcaca      2640
     caggacacgg ctcctttttt atgcgaggct cctgttccgt tagtgaaact taccctccat      2700
     catccaccat tgttgctagc catcggctct aagctgcctc acgattatgt catttcacct      2760
     aatgtcgtct attacgattt tcgtaaggcc gatcatcgcg gtattgctca attgctctcg      2820
     ggttttgatt ggagcgtaat cttggattca gatgacatcg aagaggcagc acaaactttc      2880
     tccaatgttc tttcatacgt attagacaga catgttccca aaaaggtcca acatcattct      2940
     ttccgtccgc cgtggcaaac cagcgagctc cgccgattga aatcaaaaaa gagagctgca      3000
     ctcaagaaat tcaccacaca ccgcactccg ctacttaaac gccactacgc gagggtcaac      3060
     aacgagtaca aacaagccgc gaaagattgc tttcttcgat atcagcgagg tattcaaacg      3120
     aagctcaagt accgccccaa acaattttgg aagcatgttg acgaacagcg acgtgaagct      3180
     ggactgccgt cgtgtatgtc gctgaatgga aacgtggcct cctcaccaca ggacatatgc      3240
     aatctattcg ccgataaatt cgccagtgtt ttcaatgatg aaatattgag cgacgaacat      3300
     atcacactcg ccgccgctaa tgttccacag ttcggccaaa ccctgagtag cgtagacatt      3360
     aacgaagata tgatcatcag agcatcctcg aaactgaaaa cgtcttataa tccgggaccc      3420
     gatggtgttc catcgtcatt tctcaaaacg cacatgcgtg acttaatttc accactgctt      3480
     catgtttttc gtctttcgtt gacccttgga gtatttccat ccacatggaa gctcgcacat      3540
     atgttccctg ttcacaagag cggcaacaag catgatgttg gcaactatcg tggtattacc      3600
     tcgctctgcg ctgttgcaaa actgttcgaa ctcgttatga tggaaccgtt acttgctcac      3660
     tgtaaaccat acattagcgt cgatcagcat ggattcgtga caggtcgctc tacagctacc      3720
     aatctactct gtttaacttc atacataacc gagagtatgt cgaaacgctt tcaaaccgat      3780
     gtaatttaca cagacttgac tgcagccttc gataagctga atcataacgt tgctgtcgct      3840
     aaacttgatc ggcttgggat acatggctgt tttctccaat ggcttcagtc gtatctcact      3900
     ggtcgacacc tagccgtcct cataggagac tgttattcgt cttcgtttgc tgctacatcg      3960
     ggaatcccgc aaggtagtca cttgggacca wtgatcttcc tgatctactt caatgatgtg      4020
     aacctggtaa ttgaaggacc acgattatcg tacgcggatg acctcaaact gtacctccgt      4080
     attcgttcca tcgacgactg ttactttctc caccaacagc tgaatgcctt tgcggattgg      4140
     tgtaatctaa atcggatgga agtgaacccg gcaaagtgct cagttatttc gttttcgcgc      4200
     aaaaagcagc acatattgca cagttataca ttgtcaggag aagtaatcaa acgtgtcagc      4260
     caagtcaagg atttaggagt gatcctggat gcacagctat cgttcaaaca acatgtggac      4320
     tacgccgttg gtaaagcctc cagagtactt ggattcatct tcagaacagc taaggagttc      4380
     acggacattt actgtctgaa atctttgtac tgttctctat ctcgctccat cctggaatac      4440
     tgttcggttg tttggactcc ccactacaac aacggcgtct taaggatcga gtctgttcaa      4500
     cgacggttct tgagatatgc gctgcgacga ttaccttggt cggatccttt tcgcctgcct      4560
     agctaccaaa gtcgttgcca attgatcgat ctggagtcac tatcggttcg tcgagatacg      4620
     gcaagagcgt tactgttatc ggacgtactt caggggcgca ttgattgccc gtatattttg      4680
     aatgaaatca acataaatgt ccaacctcgt gctctcagga acaggtctat gctgcgactg      4740
     ccgcttcagc gaacaaacta cagcactcac ggtgctatca atggcatgca gcgagtattc      4800
     aacagagttg ccactttgtt tgacttcaat ttgtcccgcc attcgctccg tacgagattt      4860
     agttcgtttt ttttcaagtg cttcctaatt tgtccgttct tgtaagttat tgtttgtgaa      4920
     agctattagt gttgacatgt tcatttgttg aatgttttaa aaacgtgtac tattagaatt      4980
     taagttttat cattggggct ttacttagcc cgttgactaa taataataat aa              5032
//
ID   CR1_Ele35   repbase;    DNA;    INV; 5162 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele35.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5162
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5162
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >96% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           409..1257
FT                 /product="CR1_Ele35_1p"
FT                 /translation="MSLVCCSCAGDIGDIQVECQGFCKAIFHPRCCAVAAD
FT                 VFEEVMRNNQLFWFCPSCTALMKDMRLRNTARAAYEVGQGHALNSHSDIMK
FT                 NLKTEIMDELKAEIRTNFAKLINSSTCTPKSSKRVGVDPRFTRSRRLFSTV
FT                 AKSIPNQQPPLLLGTGSTPSPSLDIVTVPPNQPKFWLYLSRIARDVSVNQI
FT                 CALAKKRLGTDDVQVIRLVGKGRDMSTLSFISFKIGMNMEMKSKALSTSTW
FT                 PKGVVYREFTDNRTDENFWRPVPAAASDDPLSLSTEDVVLME"
FT   CDS           1176..5066
FT                 /product="CR1_Ele35_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RKFLASCTCCRIRRSAEPFDRRCCFNGVRMEEVNSYS
FT                 SPGRKLATSIKEASVPLTAVEPLPPATSSRPGPACEKEDEVFQNFSTGKYV
FT                 ILPRTSSAVPFVDFSISPSIQILPTSSSWTPGRIFAACIKETPTLLTAVEP
FT                 FPPTTSSRPGPACEHEDGVFRTPTTGKYADLSSISSAVSFVVSSITSSIHS
FT                 RSTSLKSTPGRTFSASLKEAPIPFTAVEPFQPATSSRPGPACDLEDGVFRA
FT                 PMKGKYTDLPSISSAVSFVDSRNLVPKDALTDSRLYDLWTTALGDPQLAIA
FT                 GPSRNSACFSAIPKLQLTAKPSIPFNVSGGSTQHKRPERCPENPSDMPFDL
FT                 RIYYQNVRGLRTKIDDVFLSTAELDYDVYVFTETWLDECIESRQLFSPDYS
FT                 VFRVDRCATNSSRRRGGGVLIAVKEKFGTTVVSTRANIEQLWVKMSTQVTD
FT                 IFIGALYIPPDKSQDGTFMQLHLDVISEVCSSRSDASPLVVFGDFNQPRLA
FT                 WLLSNGYAIVDALNSHISSASQILLDNMAFQGLRQRNSIRNSSGRVLDLVF
FT                 SDDSSKKSVLATPATEHVVPLDRYHPALDFSVQIPSSMTFYEDIDLSERDF
FT                 RRCNFDALNSLLSQVDWSEVHQCSDVDSAVTCFNAIIHNYIAETVPLNRPP
FT                 RKPAWSNRHLGVLRRRRDKLLQQYNRQKCAHFKRQLDEASRIYRGYNRFLY
FT                 KNYVSRKQNDLRRNPKSFWNFVNSKRKEHGLPTTMHRGDVFTSSQDEKCAL
FT                 FAQQFSSVFVGRIPTVQDTEAATCIVPRDVVDLDIFHVNESMVYAALQKLK
FT                 LSNCPGPDGIPSCIFRKCGASLVAPLVSIFNKSLQSQLFPTAWKTSYMRPV
FT                 FKKGDKTDFANYRGITSLSAGAKCLETIVNKVMFSSFCCYISEAQHGFFPR
FT                 RSVESNLVDFTSTCIRSMDNGAQIDAVYTDIKAAFDTVNHEILLAKLLRLG
FT                 VSTRMCNWLQSYLRNRSLCVKVGSTVSHPFHPASGVPQGSNLGPLLFSLFF
FT                 NDVTIVLANGGLLIYADDLKIFLVVRTEADCRDLQELLNQFARWCTMNFLA
FT                 VSVSKCCVISYRRCKSPILYDYNINGQELERVDKVKDLGVLLDYRLTFKLH
FT                 YATIIDKANRQLGFILKITKEFNDPMCLRSLYCSLVRSILEFASIVWSPYE
FT                 AVWITRIEAVQRKFVRHALRDLPWRDPLNLPPYDHRCRLLGLEPLHVRRKN
FT                 SRAVYGSKIVRTEVDCPALLQHVQFYAPERVLRTRQLIQIASRNTGYGAND
FT                 PLNSICNEFRQAYGVFDFNLTTNTFRQRLSRTRFIN"
XX
SQ   Sequence 5162 BP; 1342 A; 1178 C; 1134 G; 1508 T; 0 other;
     attcaatcac cgtgctttgt ttacatgttc gatgtttcca aagctgctaa agaaatcgta        60
     tattttgcgt gtttaagtac ccttttccgt cgaatcttat tttgttgcgt agtggatcgt       120
     tgagtgcatc attagcaagt gaagataccg gaaagagatc ggaataattt gagaatatta       180
     tccactaaac tctcgtcgcg tttctgcggt ttgcaaaaat ctgtgttgtt ttgcttcgtg       240
     tgtaccctta ctgcactttg ctctggctac cgtacctata cacccgtaca aaacaggtta       300
     actctactga gtgtgttgtc ttgtttatta tcggacatca tagtttatcg atacgtgttg       360
     gtcgtgagtg aaaatttcaa gagtaacatt tgaaaaaatc ctatcaatat gtcactggta       420
     tgttgttcat gtgctggtga tatcggtgat atccaagtcg aatgccaagg cttctgtaaa       480
     gccatttttc atcctcgatg ctgtgcggtt gctgccgatg tgtttgaaga agtgatgaga       540
     aacaatcagc tgttttggtt ttgtccttca tgtacggcgc ttatgaagga tatgcgcctt       600
     cgaaatactg cacgtgcagc ttacgaagtg ggtcaaggtc atgccctcaa ctcccatagc       660
     gacattatga aaaatctcaa aacagaaata atggatgaac tgaaggcgga aattcgaacc       720
     aacttcgcca aactgataaa ctcaagtact tgtactccga aatcttccaa acgcgttggt       780
     gttgacccca ggttcaccag gagtcggagg ctgtttagta ctgttgctaa atcaatcccg       840
     aaccaacaac cacctctgtt attgggaact ggtagtactc cctctccgtc actcgacatc       900
     gttacagtgc ctccaaatca accaaagttt tggttatatt tgtcacggat tgctagagat       960
     gtatcagtca atcaaatatg tgcattagct aaaaaacggc tcggtactga tgatgtgcaa      1020
     gttatccgac tggtgggcaa aggaagggac atgagtacat tgtccttcat ctctttcaaa      1080
     attggaatga acatggagat gaaatctaag gcgctatcca cttcaacgtg gccgaagggt      1140
     gtggtctaca gagaatttac tgacaacaga actgacgaaa atttttggcg tcctgtacct      1200
     gctgccgcat ccgacgatcc gctgagcctt tcgaccgaag atgttgtttt aatggagtaa      1260
     gaatggaaga agtcaactct tactcctctc cgggacgcaa acttgccaca agtattaagg      1320
     aagcctctgt tcctctcacc gcagtcgagc ccctcccgcc agcgaccagc agtcgtcccg      1380
     gtcctgcgtg tgagaaggaa gatgaggtct tccaaaattt ttcaacaggc aagtacgtta      1440
     tccttccaag aacttcgtct gctgtaccat tcgttgattt cagcatatct ccatcaatcc      1500
     aaatattacc gacatcttca agttggacac cgggacgcat atttgccgct tgcatcaagg      1560
     aaacccctac tcttcttacc gcagtcgagc ccttcccgcc aacgaccagc agccgtcccg      1620
     gtcctgcgtg tgagcatgag gatggggtct tccgaactcc tacaacaggc aagtacgctg      1680
     acctttcgag catttcgtcc gctgtatcgt ttgttgtttc cagcataacg tcatcaatcc      1740
     attcacgttc aacatctctg aaatcgacac cggggcgcac attttccgct agtcttaagg      1800
     aagcccctat tcctttcacc gcagtcgagc ccttccagcc agcgaccagc agccgtcccg      1860
     gtcctgcgtg tgatttggaa gatggggtct tccgagctcc tatgaaaggc aagtacactg      1920
     atcttccgag catttcgtcc gctgtatcgt tcgtcgattc cagaaacctc gttccgaagg      1980
     atgcactcac cgactcacga ttgtatgacc tatggacgac tgcattgggc gatccccaat      2040
     tggcgatagc gggcccctca cggaattctg cttgtttttc tgcgattcca aaacttcaat      2100
     taactgcgaa gccgtcgatc ccattcaatg tttctggagg atctacacag cataaacgtc      2160
     cggaacgatg ccctgaaaac ccaagtgata tgccattcga tctgcgaatt tactatcaga      2220
     acgtgcgtgg cttacgaacg aaaattgatg atgtgttcct gtctacggcg gaattagact      2280
     acgatgtcta cgttttcact gagacgtggc ttgatgagtg cattgaatct cgtcagctgt      2340
     tttctccgga ttattctgta tttcgggttg atcgttgcgc taccaacagt tctcgccgtc      2400
     gtggtggtgg cgttcttatc gccgttaaag aaaagtttgg aacgacagtt gtttctactc      2460
     gagctaatat tgaacaactg tgggttaaaa tgtcgactca agtgactgat atttttattg      2520
     gtgctttgta cattcctcct gacaaaagtc aagacggaac ttttatgcaa cttcatctcg      2580
     atgttatttc cgaggtctgc agttcacgca gcgatgcaag tccgcttgta gtttttggtg      2640
     atttcaacca accccgtttg gcatggctat tgagcaacgg ttacgctatc gttgatgcac      2700
     taaactccca catttcatcg gcaagtcaaa ttcttctcga caacatggca ttccaaggct      2760
     tgcgacaacg taattcgatc cgtaattcca gtggccgcgt gttggacctt gtgtttagcg      2820
     atgactccag taaaaaaagt gtacttgcaa ctccagcgac agaacatgtt gtcccacttg      2880
     atcgatatca tcctgctctt gatttctccg tgcaaatacc atcatcaatg acgttctacg      2940
     aggacatcga cctttcggaa cgagacttcc gtcgttgtaa ttttgatgca ctaaacagtc      3000
     ttctttccca agttgattgg tccgaagtac accagtgctc tgatgtagac agtgcagtaa      3060
     catgctttaa tgccattatt cataattaca ttgctgaaac agttccgctg aacagaccgc      3120
     caagaaaacc ggcttggtct aaccgacatc ttggtgtcct ccgacgtcga cgtgataaat      3180
     tgcttcaaca atacaatcgt caaaaatgtg cacatttcaa acgacagttg gacgaggcta      3240
     gtcgtatata ccgtggatac aatcgctttc tgtacaaaaa ttatgtctcc aggaagcaga      3300
     atgatcttcg tcggaatccg aagagttttt ggaactttgt caactcaaaa cggaaagagc      3360
     acggccttcc aacaacaatg caccgaggag atgttttcac aagcagtcaa gatgaaaagt      3420
     gtgcgctttt tgcacagcag ttttcaagcg ttttcgttgg ccgcattcct actgttcagg      3480
     atactgaagc tgccacttgt atagtgccac gtgacgttgt tgaccttgat atctttcatg      3540
     tcaatgaatc aatggtttat gctgcattac agaagcttaa attatcgaat tgccctggac      3600
     ctgatggtat tccgtcctgc atctttagaa aatgcggtgc ttctttggtg gctccactgg      3660
     taagcatttt taacaaatcg ctgcaatcgc aactgtttcc aactgcttgg aaaacatcct      3720
     acatgcggcc ggtattcaag aagggcgata agaccgattt tgccaactac cgtggaataa      3780
     catccctttc agcaggtgcg aaatgcttgg aaaccattgt taataaagta atgttcagct      3840
     cgttctgttg ctatattagt gaggctcaac acggcttctt ccctaggcgg tcggtagaaa      3900
     gtaacttggt tgattttact tcgacctgca ttaggtccat ggataatgga gcgcaaatag      3960
     acgctgttta cacggatatc aaggctgcct ttgacactgt gaaccacgag attctgttgg      4020
     cgaaattact ccgactcggt gtttcaacac gaatgtgtaa ttggctgcaa tcgtacctta      4080
     gaaacaggag tctctgtgtg aaggttggat ctactgtatc gcatcctttt caccctgcat      4140
     ctggggtacc gcagggcagc aacctgggac ccttactgtt ttcgctgttc ttcaatgatg      4200
     tgactatcgt tcttgcaaat ggcggtttgt taatctacgc agacgatcta aaaattttcc      4260
     tcgtcgtgag aactgaagcg gactgcagag acctccagga gctattgaac cagttcgcac      4320
     gctggtgtac catgaatttc ctggctgtta gcgtttccaa atgctgtgtg atttcatacc      4380
     gtcgctgtaa atcaccaatt ttgtacgatt acaatataaa tggtcaggaa ctcgaacgtg      4440
     tggacaaggt caaagatctg ggcgttttgt tggattacag attgacattt aaactgcatt      4500
     atgccactat cattgacaag gcgaaccgtc aactgggctt catcttaaaa attacaaaag      4560
     aattcaacga cccgatgtgt ctgcgttcct tgtactgttc tctggttaga tccattttag      4620
     aatttgcttc tatagtatgg tcaccttatg aggcagtgtg gataaccaga atagaagcag      4680
     ttcagcgtaa gtttgtgaga catgctttga gggatctacc gtggcgtgat ccgttgaact      4740
     tgcctcctta cgaccatcgt tgcagattgc tgggactgga accgctgcac gtccggcgca      4800
     aaaatagccg agctgtttat ggatcgaaaa ttgttcgtac ggaggttgat tgtcctgctt      4860
     tgcttcaaca tgtgcaattt tatgctccag agcgcgtact acggacaagg caactgatcc      4920
     agatagcttc caggaatact ggttatggag caaatgatcc gttaaattcc atttgcaatg      4980
     aattccgaca agcttatggt gtatttgatt ttaacttgac gacaaatact tttagacaac      5040
     gcttaagcag aacacgtttt ataaattgac tatgtttaca ttttttattg tgttagtatt      5100
     agtatttcat taagaccatg atgtccgatg gaagtaatca aataaataaa taaataaata      5160
     aa                                                                     5162
//
ID   CR1_Ele36   repbase;    DNA;    INV; 3856 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele36.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3856
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3856
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 20 sequences with >97% identity, and ~98% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           335..3769
FT                 /product="CR1_Ele36_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEAPNPSNSVEPRRQHQXSRPGPVVETEERGXHRAPF
FT                 GKYRSVSFTSQTETTSALSNDPSHSNNIETQSHPGPVFGDMEGVYQSITSG
FT                 YSSDENYARNSTSQPWRIVESILEAPGSSASVVPTPALAHHSRLXPGGNCS
FT                 PGVFQPALAGKYIHDLAHTSPDSASNFSSMAGSTNTSPLTSRVSSQQDIIV
FT                 YYQNAGGINSDVDEFCVAVSDNVYAIIVITETWLDSRTLSRQVFGNDYEVF
FT                 RCDRNTNNSRKAKGGGVLVAVRSTFQARELENEAWRSLEQVWTSIKLGDRT
FT                 LFLCALYIPPDRVRDRALVETHCQSVLSVIEMANATDELIVIGDFNLPGIS
FT                 WKTSHSGFLFPDVDHSVIHANASFLLDNYSSATLSQINHVTNQNQRSLDLC
FT                 FVSAQDTAPFLCEAPSPLVKTALHHPPLQLSIKTTLLHDFNISPAAVSYDF
FT                 RKADHRNIANLLSSFNWDDILGNSDIDTAAQTFSNVLNYVIDRHVPKKSHH
FT                 PPSRSPWQTNELRRLKSRKRAALRKYTKHRTTSLRRSYVQINHEYKRVAKR
FT                 CFLQYQQGIQRKLKACPKQFWKFVNEQRREAGLPSSMMLNGNVASTPNDIC
FT                 QHFARKFASVFTEDRLTEDDIQLAANSVPLLSENMDAIDIDRNVIARACSK
FT                 LKKSFNPGPDGIPSAFLKEHLDSLLTPLLLVFQLSVTVGVFPSCWKLAYMF
FT                 PVHKKGNKRDCNNYRGITSLSAIAKLFELIIMEPLFSHCKPYISTDQHGFL
FT                 AGRSTATNLLCLTSYITNSMSERAQTDVIYTDLTAAFDKLNHRIAIAKLDR
FT                 LGINGSLLQWLQSYLTGRHLFVDLGDCQSPTFAVSSGIPQGSHLGPLLFLI
FT                 YFNDVNLVIKGPRLSYADDLKLFLRIRSTDDCRFLQLQLNAFADWCHLNQM
FT                 DVNPLKCSVISFSRKKETIVHKYALFGQDIERVNQIKDLGVILDIQLSFKQ
FT                 HISFVVDKASKILGLIFRISKHFSDIYCLKSLYCSLSRSVLEYCSVVWTPH
FT                 YNNGVERVESVQRRFLRFALRRLPWSDPYRLPSYESRCQLIRLEPLSVRRD
FT                 TARALFIADILQGHIDCPALLEQVNINVQPRALRNNVTLRLPLQRTNYSMF
FT                 GAIYGLQRLFNRVAALFDFNLSRQLLRRRFSSFFDRS"
XX
SQ   Sequence 3856 BP; 998 A; 953 C; 809 G; 1093 T; 3 other;
     gttaaatttg tatctctagt ttgggtttat ccacaaattt ctgcattaca acgaaaaaat        60
     tgtagtaata gcctttttat acgattagat gaaaaaactt tatttggacc aatttcacaa       120
     gaaaatcgaa ttttcaattt gactgttatt tccaacggga tgatatcagg tatgcaagat       180
     aattattaga ttaccattat caagcatttt gagacgtatt taaggttttg tccgaccttt       240
     gtatgaagga ccgccactgt gagccgatcc aaactacatc gctgcatatc ctcctctgga       300
     atgcgcttca ccaggacgca cgaaccgacg ctcaatggaa gcccctaacc cgtccaactc       360
     agtcgagccc cgccgccagc atcaackcag ccgtcctggt cctgttgttg agactgagga       420
     aaggggctkc caccgcgctc cttttggcaa gtatcgtagt gttagcttca catcacaaac       480
     tgaaaccact tctgctctca gcaacgatcc ctcgcattcg aataatatcg aaacgcagag       540
     tcatcccggc cctgtgtttg gggatatgga gggggtatac cagtctataa cctcaggcta       600
     ctccagtgac gaaaattatg cccgaaattc tacatcacaa ccgtggcgca tcgtggaaag       660
     cattttggaa gcccccggct cttctgcctc agtcgtgcct actccagccc tcgctcatca       720
     cagtcgcctc gktcctggtg gcaattgtag tccgggggtc ttccaacctg ctttggcagg       780
     caagtacatt cacgatttgg cccatacctc gcctgattcc gcttcaaatt tcagcagcat       840
     ggccggatcc accaacactt cgcctcttac atcccgggtt agcagccaac aagacattat       900
     cgtatactat cagaacgccg gtggtattaa cagcgatgtg gacgagtttt gcgttgctgt       960
     ttcggataac gtttacgcca tcattgtaat cacggagacg tggttggact cccgcactct      1020
     atctcgtcag gtatttggta atgattatga ggtatttcgt tgcgatcgca ataccaataa      1080
     cagccgcaaa gcaaaaggtg gaggcgtgtt agttgcggta agatctacat tccaagctag      1140
     agagctcgag aatgaagctt ggaggagctt agagcaggtg tggacgtcga taaagctagg      1200
     tgatcgtacg ttatttctgt gcgccttgta cattccgcct gatcgtgtac gcgatcgagc      1260
     ccttgtcgaa actcattgtc agtcagttct ttctgttatt gaaatggcta atgcaaccga      1320
     tgaactcatc gtgatcggcg acttcaacct acctggcata tcatggaaaa cgtcacatag      1380
     cggctttctt tttccggatg tggatcactc ggttatacat gccaacgcct cgtttctcct      1440
     ggataattac agttcagcta ctctctctca aatcaaccac gtcaccaatc aaaatcaacg      1500
     cagtttagac ctctgctttg tgagtgctca ggatacagcc ccgtttttat gtgaagctcc      1560
     ttctcctcta gtaaaaacag ctcttcatca tcctcctctg cagctttcca tcaaaactac      1620
     gctgttacat gactttaata tatcgcccgc cgcagtgtca tacgattttc gcaaagctga      1680
     ccaccgtaac atcgccaact tgctctccag tttcaattgg gacgacattc tcggcaattc      1740
     tgatatcgat acagctgcac agactttttc taacgttttg aattacgtca ttgaccgaca      1800
     cgtccctaaa aagtctcatc atcctccatc tcgttcccct tggcaaacga atgaactgcg      1860
     tcgtctgaaa tcgagaaaaa gagcagccct taggaagtac acgaagcatc gaacaacatc      1920
     tcttcgtcgt agctatgtcc aaatcaatca cgaatataaa cgagtggcga agcgatgttt      1980
     tctgcagtat cagcaaggaa tacagagaaa acttaaagca tgtcctaagc agttttggaa      2040
     attcgtgaac gaacaacgtc gtgaagctgg cctgccgtcc tccatgatgc tcaatggcaa      2100
     cgtagcttcc accccgaatg acatttgtca acattttgca cgaaaatttg ctagcgtctt      2160
     taccgaagat agattgactg aggacgatat tcagctcgcc gccaatagtg ttcctcttct      2220
     cagtgaaaac atggacgcta tcgatattga cagaaacgtg attgctagag catgctcaaa      2280
     gctaaaaaaa tccttcaatc ctgggcccga tggtattcct tcagcgttcc ttaaagagca      2340
     tttagacagt ttgctgactc cactgctcct tgtttttcag ctgtcagtga ccgtcggcgt      2400
     cttcccgtca tgttggaagc tagcgtatat gtttcctgtt cacaaaaaag ggaataagcg      2460
     ggactgcaac aattatcgcg ggattacctc attaagtgct atcgccaagc tgttcgagct      2520
     gattatcatg gagcccctgt tttcgcactg taagccgtac attagtaccg atcagcatgg      2580
     tttcttggct ggccgatcca cggctactaa cctcttatgc ctaacatcgt atatcacgaa      2640
     cagcatgtct gaacgtgcgc aaacagacgt tatttatacg gatttgacag ctgctttcga      2700
     caaattaaat caccgcatag ccattgcaaa gctagatagg ctgggaatca acggcagcct      2760
     tttacaatgg cttcaatcgt acctgaccgg tcgtcatctg ttcgtcgatt tgggagactg      2820
     ccagtcacct acttttgctg tctcatctgg aatccctcag ggaagtcacc tggggcctct      2880
     gttattcctg atttacttca acgatgtcaa cctggtgatc aaaggaccac ggctttctta      2940
     cgcagatgac ctgaagctct ttcttcgaat ccgctcaact gatgactgca gatttcttca      3000
     acttcagctg aacgcttttg ctgactggtg ccatttaaac cagatggatg ttaacccttt      3060
     aaaatgctcg gtgatatcgt tctcacgcaa aaaagagaca attgtccata agtatgcctt      3120
     atttggtcaa gacatagagc gtgttaacca aattaaggac ctgggagtta tcttggatat      3180
     ccaactctcc tttaagcagc acatctcgtt cgtcgttgac aaagcttcca aaattctagg      3240
     acttatcttt agaatttcta aacatttctc ggatatctac tgtcttaaat cgctctactg      3300
     ctccctgtct cgttccgtct tagagtactg ctcggtagtt tggacgcctc actacaacaa      3360
     tggagttgag agagttgaat ccgttcaaag gagatttttg agatttgcac tacgaagact      3420
     tccgtggtcg gatccctatc ggctgccgag ctatgaaagc cgttgccaac ttattcgcct      3480
     ggaacccctg tccgtccgca gagatacagc tagagctttg tttattgccg atattctgca      3540
     aggacacata gattgccctg ccctgttgga gcaagtcaac ataaatgtgc agccccgagc      3600
     ccttcggaat aacgtgacgc tgagattacc tcttcaacga actaattata gcatgtttgg      3660
     cgctatttac ggtctgcaga ggcttttcaa tagagttgcg gctctctttg atttcaactt      3720
     gtctcgccaa ctacttcgac gaagattcag ttcgtttttt gatagatcgt aagaatgaca      3780
     atttttaata tgtttagttt taagatgaca tcattggggc tttgaagcct gttggtggta      3840
     caagtaaata aatgaa                                                      3856
//
ID   CR1_Ele37   repbase;    DNA;    INV; 5091 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele37.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5091
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5091
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 17
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1203
FT                 /product="CR1_Ele37_1p"
FT                 /translation="MSSSAACDHCAKPIKCEEDCVTCMAFCERMVHLKCTV
FT                 AKLNKAFVRIVHENPNLMWMCDECAKLMKIARFKSTVSSFGEAINAITEKQ
FT                 ESVHAEIKKELAKQGQQIAQLSMRITPLTPILSQEPGTSSRQPPLKRRRDD
FT                 GSVSNKPLVGGTKIVADANVLTVPEPIELFWVYLSRIHPSVKPDAVEQLVK
FT                 DCLHCEGIIKAIPLVKRGIDTNRLNFISFKVGIDPSLREAALNADTWPKGI
FT                 LFREFEDSTSKNLWLPRQNTPAILISPDPASSPFSTPVSGIVPSC"
FT   CDS           1248..4919
FT                 /product="CR1_Ele37_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGALEPLDTVAQAASRHLSRSGPVVEYGNRVSQPSHT
FT                 GKYSSFSSSSPLDQFSRSSAVDPSATTSNRLYSQIAATMASSYLESADNYL
FT                 ISIDGPSIEAHCATQLFSQPGRTVYSFLEAPDSSSEVVPSPAIAQHSRPGP
FT                 LARCGSGVFHRALTGKYIQASVPSSPDAPSIFSVNDDISTSSAAGQPERIV
FT                 ESFMEALDPSATVLPLAAHVHHSRSGPVVGNGERVFQQPDSGEYSPVSTCT
FT                 HSTPDALLHSRISEPSAATSKLDIVLYYQNVGGMNTSIDDYRLAVSDACYD
FT                 IIVLTETWLDSKTLSNQVFGSGYEVFRCDRNPNNSCKRTGGGVLVAVRSGL
FT                 RVKALDNGLWRCLEQVWVSIQFDGRTLFLCALYIAPDRVRDVELINAHCQS
FT                 VFSMMESASPTDEIIIVGDFNLAGVSWKPSHSGFLYPDPECSSFHACAINL
FT                 LDSYSAATLTQINHVVNENNRSLDLCFVSFQEKAPIISEAPCALVKDVAHH
FT                 PALMISIEGYQISEFDDRPASVSYNFVKADHRSIADVLSSIDWATILDPRD
FT                 VEVAATTFSNVLSYVIDRHVPKRIHLQDAHPPWQTKELRQLKSQKRAALRK
FT                 LTKHRTLPLRDDYVRINNEYKRLSRLCYSQHQRDIELKLKNKPKSFWKFVN
FT                 EQRKESGLPSSMELNGEIASTTQEICQLFAEKFANVFNDEGITEDQVSRAA
FT                 SYVPLNGESLSAIDVQFDAITKATSKLKSSNNPGPDGVPSALLKKHIDNLL
FT                 VPLRHLFQMSLSSGTFPSCWKTAYMFPVHKKGSKHDVNNYRGIAALCSVSK
FT                 LFELVVMEPLLSHCQQYLSPDQHGFTAGRSTTTNLLCLTSYITNSMTERTQ
FT                 TDVIYTDLSAAFDKLDHAIAIAKLDRLGVSGNLLCWFRTYLTGRQLLVSIG
FT                 DFKSSSFSASSGIPQGSHLGPLIFLLYFNDVHLLIKGPRLSYADDLKMFLQ
FT                 IRSTTDCHFLQQQIDAFANWCSLNRMVVNPVKCSIITFSRLKQPTLFAYSL
FT                 YGTIIERVNHVKDLGVIMDSQLSFRQHVSYTVDKASRTLGFIFRIAKNFTD
FT                 IYCLKSLYCSLVRSTLEYCSAVWCPAYNNGAERIESVQRRFLRFALRKLPW
FT                 TNPFRLPSYESRCQLIDLELLRTRRDTIRALTIADTLQGRIDCASILEQID
FT                 LNARPRLLRNSSLLRLPLRRTNYSTNGGINGLLKLFNRVASIFDFHLTREF
FT                 LRRRFSSFFAGRNN"
XX
SQ   Sequence 5091 BP; 1285 A; 1338 C; 1076 G; 1392 T; 0 other;
     tatcatcact gtacgaaagt tggttggttt atgtatcgct ccggaaatta tagtgttatt        60
     ccgttattta atcgtattta atcgaatcct ttctgtgtca accgttgaat tgcccgtctg       120
     tgaacattaa ttccgtggaa gatccggttt agttggtgat aagattgaga aatcactttt       180
     aagattctgt gaaacagtgg tacacttctc tcgcgcgatc ttgttgtttg tgcgcttact       240
     acacttttca agcaaccgta cttttgtttt gctgtttacg tacctgtacg ctcagtgcac       300
     tttctcgacc accgtacttt caaattagag catctccacc ttaccatgtc atcgtccgct       360
     gcttgcgatc attgcgcaaa gcctatcaaa tgcgaagagg attgcgtaac ttgtatggct       420
     ttttgcgaga ggatggttca tctgaaatgt acggtcgcaa aactcaacaa ggcgtttgtg       480
     agaatcgttc atgaaaatcc gaacctaatg tggatgtgcg atgagtgcgc caaattaatg       540
     aaaattgcga ggttcaaatc gacggtttct tcatttggtg aagctattaa cgctattacc       600
     gaaaaacaag aatctgtgca tgctgagatc aagaaagaac tagccaaaca aggacagcaa       660
     atcgcgcagc tatccatgcg catcaccccg ttaactccaa ttctttccca agaacctggt       720
     acttcctcac gacaaccgcc cttgaaaaga cgccgtgatg acggttcggt ttccaacaaa       780
     cctctcgtcg ggggcactaa aatagtggct gatgcaaacg tgcttaccgt gcctgagccc       840
     atcgagcttt tctgggtgta tctctctcgt attcacccta gtgttaaacc ggatgcggtt       900
     gaacaactgg ttaaggattg cttgcactgt gaaggaatca tcaaagcgat tccgcttgtt       960
     aagcggggaa tcgataccaa tcgcctgaac ttcatctcat tcaaagtcgg cattgaccct      1020
     agccttcgcg aagctgcgct caacgcggac acatggccga aaggaatact gtttcgcgag      1080
     tttgaagaca gcacatcaaa aaacttgtgg ctgccacgcc aaaacacgcc tgctatcctg      1140
     atttccccag atccagccag ctcgccattt tcaactccgg tatccggcat tgtaccgagc      1200
     tgttaacacc tgaatgctgt aaaccagaac gcactgcctg tcgcattatg ggagccctcg      1260
     aacctctcga cacagtcgcg caagctgctt cccgccatct cagccgttct ggtcctgttg      1320
     tcgagtatgg taacagggtc tcccaaccct ctcacacagg caagtattca tcgtttagta      1380
     gctcttctcc gcttgatcag ttctcacgtt ctagcgctgt ggatccctct gccaccacga      1440
     gtaatcgctt gtatagtcaa atcgctgcga ccatggcctc ctcatatctg gagtccgccg      1500
     acaattatct catttccatc gacggccctt caatagaagc tcactgcgca acccagctat      1560
     tttcacaacc aggacgcact gtatacagct ttttggaagc ccctgattcc tctagcgaag      1620
     tcgtgccatc tcccgccatc gctcagcaca gtcgtcctgg tcctttagct agatgcggat      1680
     caggggtctt ccatcgcgca ctcacaggca agtacattca agcctctgtt ccttcgtcgc      1740
     ctgatgcgcc ctcaattttt agtgtcaacg acgatatttc aacttcatct gctgctggac      1800
     aaccagaacg catcgtagaa agcttcatgg aagccctcga tccctccgct acagtcctgc      1860
     ctcttgctgc ccacgttcat cacagtcgtt ctggtcctgt agtcggtaac ggagagaggg      1920
     tcttccaaca acccgactct ggcgagtatt cacctgtttc aacatgcact cattcgacac      1980
     ctgacgcact attgcattcc agaataagcg aaccttcggc agcgacttcg aaactagaca      2040
     tcgttctgta ctaccaaaat gtcggcggca tgaatacaag tatcgacgat tatcgcttag      2100
     ccgtctcgga tgcctgctac gatattatcg tcttaaccga gacttggctt gactctaaaa      2160
     cgctttctaa tcaggtattc ggatccggtt acgaggtatt tcgttgcgat cggaatccaa      2220
     acaatagctg caaacgcacc ggaggcggtg ttcttgtggc ggttcgctct ggactgagag      2280
     tgaaagctct tgacaacggc ctgtggaggt gcttggaaca agtctgggta tctatccagt      2340
     tcgacggtcg tacattgttt ttgtgcgcct tgtacattgc acccgatcgg gtgcgcgacg      2400
     tcgaacttat taatgctcac tgtcaatctg tgttctctat gatggagtca gcatccccga      2460
     cggacgaaat aatcattgtc ggtgacttca atcttgctgg cgtttcgtgg aaaccgtctc      2520
     acagcggttt cctctacccg gaccccgagt gctcgtcgtt ccatgcctgt gcgattaatc      2580
     tgttggatag ctacagtgcc gccacattga ctcaaatcaa tcacgttgtc aatgaaaata      2640
     accgtagtct ggatctatgt ttcgtgagtt tccaagaaaa agcaccaata atttccgagg      2700
     ctccgtgcgc cttagtaaaa gatgtcgctc atcatcctgc gttgatgata tctattgaag      2760
     gctaccagat atccgaattc gacgatcgcc ccgcctctgt ttcgtacaac tttgtgaaag      2820
     ccgatcatcg tagcattgca gatgtcctgt caagtatcga ttgggcaact attcttgacc      2880
     cccgcgatgt tgaagtcgct gcaactactt tttcaaatgt tctctcatat gtcatcgaca      2940
     ggcatgtacc aaagcgcata catcttcaag acgcacatcc tccctggcaa acaaaagagc      3000
     ttcgccaact taagtcgcag aagagagccg ctttaaggaa actaacaaag catcgaacgc      3060
     ttcctctaag ggacgattat gtgaggatca ataacgaata taaaagatta agtcgcttat      3120
     gttactctca gcaccagcga gatatagagc ttaaacttaa aaataagccc aaatccttct      3180
     ggaaatttgt aaatgaacaa cgtaaggaat ctggccttcc gtcgtctatg gagctgaacg      3240
     gagaaatcgc atctaccacg caagaaatct gtcagctgtt cgctgaaaaa tttgccaacg      3300
     ttttcaacga tgagggcatc accgaggacc aagtaagccg cgcagccagt tatgttcctc      3360
     tgaatggtga atcgttgagt gctatcgacg tacaattcga cgcgatcacc aaggccactt      3420
     caaagctcaa atcctcaaat aatccggggc cagacggtgt cccctccgca ctcctgaaaa      3480
     aacacatcga caacttgcta gttcctctcc gtcatctttt tcaaatgtcg ctttccagtg      3540
     gcacttttcc gtcctgctgg aaaaccgcat acatgttccc agtacataaa aaaggaagta      3600
     aacacgacgt gaataactac cgaggaattg cggcgctgtg ttccgtctcg aaacttttcg      3660
     agcttgtcgt tatggaacct ttgctctcac actgtcagca gtatctcagc cccgaccagc      3720
     atggtttcac tgcgggccgg tcaactacca ctaatttact gtgcctcaca tcctacatca      3780
     ctaatagcat gacggaacgt acgcagacgg atgtcatata caccgatctc tctgctgcat      3840
     tcgacaagct ggaccacgct atcgcgatcg caaaactcga cagacttggt gtcagcggca      3900
     atttgttatg ttggttccgg acgtacctca ccggtcgtca attattggtt tcaattggcg      3960
     atttcaaatc tagtagcttt tctgcttctt ctggcatccc acaaggtagc catttgggtc      4020
     cgttgatctt tctgttgtat ttcaacgatg ttcatctgct aatcaaaggt cctcgtttgt      4080
     cttacgccga cgacctaaaa atgttcctac agatccgctc tacaaccgac tgccactttt      4140
     tgcaacaaca gattgacgct ttcgctaact ggtgctctct taataggatg gtagttaacc      4200
     cagtcaaatg ttcaattata acgttctcac gactgaagca gccgacccta ttcgcctaca      4260
     gtctgtatgg gacgattatc gaacgcgtta accacgtgaa agatctgggt gtcatcatgg      4320
     actcacaatt gtctttcagg cagcatgtgt cgtacaccgt agacaaggcg tccagaaccc      4380
     ttggatttat cttcaggatc gccaaaaact tcacggacat ctactgccta aagtcgcttt      4440
     attgctccct cgttcgttcc actctggaat attgttctgc agtctggtgt cctgcataca      4500
     acaacggcgc cgagcgaatc gagtcggttc aacgccgctt tctacgtttt gcgcttcgca      4560
     aactaccgtg gacgaatccg ttccgcctac ctagttacga gagcagatgc caactaatag      4620
     atctcgagct actccgcacg cgaagagaca caatcagagc tttgacgatc gccgatacgc      4680
     ttcagggacg aatagactgc gcatcaatcc tcgaacaaat cgacttgaat gctcgaccac      4740
     gactgctccg caatagttcg ctcctaaggc ttcctctccg acggacgaac tacagtacta      4800
     acggtgggat caacggatta ctgaaacttt tcaaccgagt cgcatcaatc ttcgactttc      4860
     atctcactcg tgagttctta cgtcgaagat tttcatcctt ttttgctgga cgaaacaact      4920
     gacaacggct ttgaatgtgc tttagattaa gttttagctc ttgacttcca tatgtgttat      4980
     ttgtagattt gacctttctt gtctcgattt gtatgttttt aactaccaac atcattgggg      5040
     cctcactttg cctgttgatg taacaaataa acaaataaac aaacaaacaa a               5091
//
ID   CR1_Ele38   repbase;    DNA;    INV; 5019 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele38.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5019
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5019
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 19 sequences with >98% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1140
FT                 /product="CR1_Ele38_1p"
FT                 /translation="MSDACDHCAKPVRNDDEYISCMAFCERMVHIRCSVTK
FT                 LNKPFVKIIQESPNLIWMCDECVKLMKIARFKSVVSSFGEAIQSITEKQES
FT                 VHAEIRKELAKQGQQIALLSKRMTPSSPFLREPGSSFQQPPSKRRRDEEFN
FT                 FKQVATKPLLGGTKDTTTASILTVPEPEELFWLYLSRVHPNVKPEAIEKLA
FT                 KDCLQCDKPIKAIPLIKRGTDTSRLSFISYKIGIDPKFRDAALSPDTWPKG
FT                 VLFREFEDQSSKNMWLPRLHTPTITVSPEIGASQFSTPTSVVNLAN"
FT   CDS           1155..4889
FT                 /product="CR1_Ele38_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MQRSNVATSVTKCRKPERFACRIKGALDPLDTVAPAC
FT                 SCHRSRSGPVVEIGDGVSQPSISGKYACFCSNSLPDQLQFFSFPSDLVDHN
FT                 NIDTGTQYSIQLNPNNQSTPTTTEHQVERSFTSSSQPGRSAASILEVSGSS
FT                 SSVRPFPASVLHSRPGPVARCGSEIFQSALLGKYTQVSAFPMPDAVPNFSI
FT                 LDSTDASDASSTLTHGHPERTVESHMEALNPSDAVQPPAVVVLHSRSGPAV
FT                 GSGARVFQPLNNGEYSTYVSSQSMPDAHVPSRNIGVSKVRRKEDIVIYYQN
FT                 VGGMNSRVNDYRMAVSDSCFDIIVLTETWLDSRTLSSQVFGTDYEVFRCDR
FT                 NPNNSRKLTGGGVLVAVRSRLKAKLIEKESWKCLEQVWVSIKLGDRSLLLC
FT                 TLYIAPDRVRDNELIEAHCDSVITAMESANPVDDVFILGDFNLPGISWLSS
FT                 QNGFLYPDPVHSSMHDCAVSLLDSYSAATLAQINHVVNENNRSLDLCFVSV
FT                 QDQAPFIGAAPCELVKAVPHHPPLIIAVENNQAHDFDNCPAGVSYDFSKAD
FT                 HRSIAAVLADINWDNVLDLRDINTSAQTFSHILTYVIDRHVPKKVVHHDSR
FT                 PPWQTSELRKLKSVKRAALRRYTKYRTPSLRSYYLRVNYEYQRVSRHCFLQ
FT                 YQRSIELKFKRKPKSFWKYVNEQRKESGFPSSMEWNGKSSSCLQEICQFFA
FT                 SKFSSVFSGESISNDQVICAANNVPMNGQALGSLDLDINAVSRAASQLKSS
FT                 NHPGPDGVPSAFLKEHIGNLLAPLCCLFRLSLSSGIFPSCWKVANMFPVHK
FT                 KGRKRDVDNYRGITSLSAVSKLFELVVMEPLLSHCKHLLDSDQHGFIAGRS
FT                 TTTNLLCFTTFITDSMIARVQTDAIYTDLSAAFDKLNHDIAIAKLDRFGVC
FT                 GNLLSWFGSYLTNRQLRVVIGDCSSDSFHATSGIPQGSHLGPLIFLLYFND
FT                 VHLVIKGPRLSYADDLKIFLRICSVADCLYLQQQLDSFASWCSLNGMVVNP
FT                 TKCSIITFSRKKQPITFDYSLLGTKIERVNHIKDLGVFLDSQLTYKQHISY
FT                 TVSKASTTLGFIFRIAKNFSDIYCLKSLYCSLVRSTLEYGSAVWSPIYNNG
FT                 AERIESVQRRFLRFALRKLPWRDPFRLPSYESRCRLIDLDLLRNRRDTFRA
FT                 LTIADVLLGRIDCGTILERVHLNARPRSLRNSVMLRLPLTRTNYGLHGALS
FT                 GLQRVFNKVASLFDFNTTREMLRRRFLSFFDERRV"
XX
SQ   Sequence 5019 BP; 1295 A; 1243 C; 1086 G; 1394 T; 1 other;
     ttgtttacat cgttgcttgt cggatcgttc tgtttctcgc accgtaatcg aacagttttt        60
     cccgtgtaaa cagtgtattt ttcacctgtg tttagtttat tttcgttaat tatcgatctg       120
     tgctctccgg catatctatt attstggtgt tctcagtgac aatacgtaga aaacgtcgat       180
     agcataatcg tctcgcgaac aacggcggat tattttcctt cacgcttaca gtgactcgaa       240
     ctcatattcg tacaggtgcg gtgttagaga atctccatca tgtctgatgc atgcgatcat       300
     tgtgcgaaac cggtcagaaa cgatgacgag tatatttctt gtatggcttt ctgtgaacgg       360
     atggtgcata taagatgctc ggttacgaag ctcaacaaac cgtttgtgaa aatcatccag       420
     gaaagcccga atttgatttg gatgtgtgat gaatgcgtga aactgatgaa gattgccaga       480
     ttcaaatcgg tcgtttcgtc gttcggtgag gctattcagt ctattaccga aaaacaagag       540
     tcagtacacg ctgaaatcag aaaggaactg gcaaaacaag gacagcaaat cgctcttttg       600
     tctaaacgaa tgaccccatc ttctccgttt ttgcgcgaac ctggctcgtc ttttcaacaa       660
     ccaccttcca aaagacggcg tgacgaagaa ttcaacttta aacaggtcgc tactaaacct       720
     ctgctcggcg gaacgaaaga tacaactacc gccagcatac tcacagtccc cgagccggaa       780
     gaattatttt ggctgtatct ttcccgcgtc catccaaatg ttaagccaga agcaatcgag       840
     aaattggcca aagattgttt acaatgcgat aagcccatca aagcaattcc gctaataaaa       900
     cgagggactg acacaagccg cttgagtttc atttcgtaca agattggaat cgatcctaag       960
     tttcgtgatg ctgcactgag ccctgacact tggcccaaag gagttttgtt ccgagaattc      1020
     gaagatcaga gttcaaaaaa catgtggtta ccccgcctgc atacgccgac tatcacggtc      1080
     tccccggaaa taggagcttc acagttctcc actcccacga gtgtagtcaa cttagcgaac      1140
     tagatctgaa caacatgcaa cgtagcaacg tagctacatc tgtcaccaaa tgccgtaaac      1200
     cagaacgctt tgcctgccgc attaagggag ctcttgatcc actcgacaca gtcgcgccag      1260
     cttgttcctg ccatcgaagt cgttctggtc ctgttgtcga gatcggtgac ggagtctccc      1320
     aaccttctat ctcaggcaag tacgcatgct tttgtagcaa ttctctgcct gatcagctcc      1380
     aatttttcag ttttccttct gatcttgtcg atcacaataa catcgatact ggaacccagt      1440
     attccatcca actaaatccg aacaaccagt ctactccgac gacaacagaa catcaagtgg      1500
     aacgcagttt tacgtcaagc tcacaaccag gacgcagtgc agctagcatt ttggaagtct      1560
     ctggatcctc tagctcagtc cggccttttc cagccagcgt tcttcacagt cgtcctggtc      1620
     ctgttgctag atgtggttca gagatcttcc agtctgctct gctaggcaag tacactcaag      1680
     tttccgcttt cccgatgcct gatgcggttc caaatttcag tattttggac tcgaccgacg      1740
     caagtgatgc ttcttcaaca cttactcatg gacacccgga acgcaccgta gaaagccata      1800
     tggaagccct caatccctcc gacgcagtcc agccccctgc cgtcgtcgtt ctccatagtc      1860
     gttccggccc tgctgtcgga agtggggcga gggtcttcca accacttaac aacggcgagt      1920
     actccactta tgttagctct caatcaatgc ctgatgcaca cgtgccttcc agaaatattg      1980
     gcgtctccaa agtgcggcgg aaagaagaca tcgttatcta ctaccagaac gtcggcggta      2040
     tgaactcgcg cgtaaacgac taccgaatgg ccgtgtcgga ttcctgcttc gacattatcg      2100
     tcctgacaga aacttggctt gactcgcgaa cgctatctag tcaggtgttc ggaactgatt      2160
     acgaggtgtt tcgctgcgat cgtaatccta acaacagcag gaagctcacg ggaggcggcg      2220
     tactcgtagc tgtccgttcc agattgaaag caaagttaat cgaaaaagaa tcgtggaaat      2280
     gtctggaaca agtttgggtg tccatcaagc ttggcgatcg atctctttta ttgtgcacgc      2340
     tctacattgc tcctgatcga gttcgtgata atgagctcat agaggcgcac tgtgactcag      2400
     tcatcactgc aatggaatcc gccaatcccg tcgacgatgt tttcatcttg ggcgacttca      2460
     atctaccagg catttcgtgg ttatcatctc aaaacggctt cctttatcca gaccctgtac      2520
     actcttctat gcatgattgt gcagtcagtc ttctagacag ttacagcgca gccacactag      2580
     cacaaatcaa ccacgtggtc aacgaaaata atcgtagcct ggatctttgt tttgtttctg      2640
     tgcaagacca agctccattc attggagcgg caccctgtga gcttgtaaaa gcagtaccgc      2700
     accaccctcc gttgattatt gccgttgaga ataaccaggc ccatgatttc gacaactgtc      2760
     ctgctggtgt gtcatatgac ttttctaagg cggatcaccg tagcatagca gccgtattgg      2820
     ccgacatcaa ctgggataac gttctcgatc tcagagacat taatacttct gcgcaaactt      2880
     tttctcacat cttgacatac gtcatagaca gacacgtgcc gaagaaagtt gtccatcatg      2940
     actcccgccc tccatggcaa actagcgaat tgcgaaaatt gaaatcagtc aagagagcag      3000
     ctctaaggag atatacaaag tatcggacac cttcattgcg aagctactac ctgagagtca      3060
     actacgagta ccaacgtgtc agtcgtcact gttttttgca gtaccagcgg agcatagaac      3120
     tgaaatttaa acgcaaacca aaatcgttct ggaagtacgt aaatgagcag cgcaaagaat      3180
     cgggctttcc ttcttcgatg gaatggaatg gcaaatcctc gtcatgctta caggaaatct      3240
     gtcagttctt cgctagcaaa ttttccagcg tattcagcgg ggaaagtata agcaatgatc      3300
     aggtcatttg tgcagccaac aatgtcccca tgaatggcca agctttgggg agtcttgatt      3360
     tggatatcaa tgctgtatcc agggccgctt cgcagttgaa atcgtccaac catcctggac      3420
     cagatggagt tccctcagca tttctcaaag agcatatcgg aaatttgctt gcaccgctct      3480
     gttgtttatt ccgattatct ctatcttccg gaattttccc ttcctgttgg aaagtggcaa      3540
     acatgttccc ggtgcataaa aaaggaagga aacgcgacgt ggataattac cgtggtatta      3600
     cgtccttgag tgctgtgtcg aagttattcg agcttgttgt gatggaacct ttgctctctc      3660
     attgcaagca cctgctggat tccgatcagc acggattcat cgccggccgc tcaacaacca      3720
     ctaacctact gtgcttcacc actttcatta ccgacagtat gatcgctcga gtgcagactg      3780
     acgctatata tactgacctg tcggccgctt ttgacaagtt gaatcacgat attgctattg      3840
     ccaaacttga cagatttggc gtctgcggta atcttctgag ctggttcggc tcttacctaa      3900
     ccaatcgtca gctaagagtt gtgataggcg attgcagttc cgacagtttt cacgctacat      3960
     ccggtatacc acaaggaagc cacctgggac cactgatttt tctgctttac ttcaacgacg      4020
     ttcatctcgt tatcaaaggc ccccgcttat cgtatgcaga cgacctgaaa atatttttac      4080
     ggatatgctc cgttgccgac tgtttatacc tacaacagca acttgatagt ttcgccagtt      4140
     ggtgctcgct gaatggaatg gtggttaacc ccaccaagtg ctccatcatc acgttttcta      4200
     gaaaaaagca accaatcacg ttcgattata gtttgcttgg cacgaaaatt gaacgtgtga      4260
     atcacatcaa ggatttgggc gtgttccttg attcacagtt aacgtataaa cagcatatct      4320
     cgtataccgt cagtaaagcg tcaacgactt tgggattcat ctttagaatc gccaagaatt      4380
     tctccgacat ctactgtcta aaatcactct attgttctct cgtgcgttcc acgttggaat      4440
     atggttccgc tgtttggagt cctatttata ataatggcgc agaaaggatc gaatctgttc      4500
     aacgccgatt tctccgattc gcactccgta agctaccttg gagagatcca ttccgcttgc      4560
     cgagctatga gagtcgatgc cgattgatag acttggacct cctccggaac agaagggaca      4620
     cattcagagc tttaacaatt gcagacgttt tactgggtcg tattgactgt gggacaatcc      4680
     tggagcgagt ccatctaaat gcccgtccac gctccctccg gaacagcgtc atgctgagat      4740
     tgcctctaac tcgaaccaac tacggacttc acggagcact tagtgggttg cagcgagtgt      4800
     tcaataaagt cgcatcattg ttcgacttca ataccacccg agagatgctt cgccgaaggt      4860
     ttttatcatt ttttgacgaa cgaagagttt aatttaagtt ttatctcttg actgtttagt      4920
     gcttttgtta agtttttgtc ctctgattgt tttatatata ttttagacat cattggggct      4980
     acaatttgcc tgttgatgtg tttcgaataa ataaataaa                             5019
//
ID   CR1_Ele38B_AAe repbase;    DNA;    INV; 5065 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1_Ele38B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5065
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1216-1216 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity. The consensus is ~78% identical to CR1_Ele38.
XX
FH   Key           Location/Qualifiers
FT   CDS           299..1159
FT                 /product="CR1_Ele38B_AAe_1p"
FT                 /translation="MSDACDQCAKPVKSDDEFITCMAFCERMVHIRCSVTK
FT                 LNKPFVKIIHESPNLIWMCDERAKLMKIARFKSAVSSFGEAFQSITEKQES
FT                 VHAEIRKELAKQGQQIALLSKRMTPSSAFLRESGSFSRQPPSKRRRDEEIN
FT                 FNPTASKPLLGGTKETTTASILTVSEPVELFWLYLSRVHPSVKPEDIEKLA
FT                 KDCLESEDPVKAIPLVKRGIDASRLNFISYKIGIDHKLRQTALSPDTWPKG
FT                 ILFREFEDLSAKNSWLPRLNTPTVMVSPELGASQFSTPSTGVNLAG"
FT   CDS           1006..4890
FT                 /product="CR1_Ele38B_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="HVAKRNFVPRVRRSKCKKLLVTPIEYADSYGVARIGS
FT                 ITVFHSLNRSQSSRVISNNAHRSNVIERVNSSCNPERFACRLKGALDPLDT
FT                 VAHAGSCHRSRSGPVVETGDRVSQPSFSGKYTSISSNSSPDQPPYSSTPSN
FT                 AVQHNSNDIGVLTIRQSQLETXNVQLTPRPPRLQGKRIYPSTVLPGRTADC
FT                 TLEVSGSSSSVVPFPASVHHSRPGPDARCGSEIFQTPLSGKLLHQVVASSN
FT                 PDADPYFSTLDTLTGNPERTLESPMEVLNPSDAVVPPAAFVHHSRSGPAVG
FT                 SGERVFQQPNNGEYFSIVNPQSLPDAQMPSRHIGVPAVQRNQDILMYYQNV
FT                 GGMNSCVDDYRLAVSDTCYDIIVLTETWLDSRTLSSQVLGIDYEVFRCDRN
FT                 PSNSRKSTGGGVLVAVRHGLKAKAVEKDLWSCLEQVWVSVELGDRTLFLCA
FT                 LYIAPDRVRDNELIQAHCDSVFTIMETANPVDDIFILGDFNLAGISWKRSD
FT                 NGFLYPDPVRSSLHACAANLLDNYSTATLAQINHIVNENNRSLDLCFVCLQ
FT                 DKAPIIEAAPCELVKVVPHHPPLIITVDNNHFHDFNNRPATVSYDYAKADH
FT                 RSIADVLATIHWESILDHNDIEVAAQTFAHVLSYIIDRHVPKRAHHNASRP
FT                 PWQTSELRKLKSVKRAALRKFTKYRTPSSRCYYLRSNYEYQRVSRHCFQQY
FT                 QRSIEQKLKRHPKSFWKYVNEQRKESGLPSSMEWNGRTATCLQEICQLFSS
FT                 KFASVFSDVQISNEQVILAANNAPLNGQTLDNFDVDDNAISRAALQLKSSY
FT                 NPGPDGIPSVVLKKHIDSLLTPLHSLFRLSLSTGIFPSCWKVANMFPVHKK
FT                 GRKRDVDNYRGITSLSSVSKLFELVVIEPLLSHCKHQLDNDQHGFITGRST
FT                 TTNLLCFTSYITDSMVDRVQTDAIYTDLSAAFDKLDHNIAIAKLDRFGICG
FT                 NFLRWFRSYLTDRQLKVVIGDCSSDSFHATSGIPQGSHLGPVIFLLYFNDV
FT                 HYVLKAPRLSYADDLKLFLRIRSTADCLYLQQQLDLFASWCSLNGMVVNPT
FT                 KCSIITFSRKKRSIAFPYSLLGTSLERVDHIKDLGVFLDSQLSFKQHISYT
FT                 VSKASTTLGFIFRIAKNFSDVYSLKSLYCSLVRSTLEYGAAVWSPAYNNGA
FT                 ERIESVQRRFLRFALRKLPWRDPFRLPSYESRCQLIDLDLLRCRRDVIRAL
FT                 TIADVLQGRIDCGTILEQINLNVRPRSLRNNIMLRLPLFRTNYGLHGALSG
FT                 LQRVFNRVSSLFDFNITRETLRRRFSLFFAERDN"
XX
SQ   Sequence 5065 BP; 1326 A; 1243 C; 1078 G; 1416 T; 2 other;
     tttgtttttt tatcacgcgc cgaaatttaa cagtttcccg tgaaatatat atcgtattta        60
     cctgcgttta gtttaccgcc ataaaatact gtgccgtgct cttcgtcaag ttgataaatt       120
     ccacatatcc tgtgttaaaa ccaaggaaag ttcgataata ttatcgcctc acgtcgcgcc       180
     gttgatagtt gttttgcttt cgctttgttt tcgccactgg tctctctgtg cactttttgg       240
     actaccgtac tttactagaa taataaagtc acagacaaac agacagtaac tccaaaccat       300
     gtctgatgct tgtgatcaat gtgctaagcc ggtcaaatcc gatgacgagt ttattacttg       360
     tatggctttt tgtgaacgaa tggtacatat taggtgctcg gttacgaagc tcaacaaacc       420
     gtttgtgaaa atcattcatg aaagcccaaa tctgatttgg atgtgcgacg agcgcgcgaa       480
     attgatgaaa atcgctagat ttaaatctgc cgtctcttcg ttcggtgagg ccttccaatc       540
     cattaccgaa aaacaagaat ctgtacacgc agagattaga aaggaacttg caaaacaagg       600
     ccaacaaatt gctctgttgt ctaagcgtat gactccatcg tccgccttct tgcgtgaatc       660
     tggatcgttt tctcgacaac cgccctcaaa aagacgccgt gatgaagaga tcaactttaa       720
     cccgactgct tcaaaaccgc tgctaggtgg cacaaaagaa acaactaccg ccagcatact       780
     tactgtctcc gaaccggttg agttgttctg gctgtatctt tctcgtgtcc atccgagtgt       840
     caaaccggaa gacatagaaa agttggctaa agactgtttg gagagtgaag atcctgtcaa       900
     ggcgattcca ctcgtaaagc gtggaattga cgctagccgc ttaaacttca tttcctacaa       960
     gattggcatt gatcataaac tccgtcagac tgcactgagc cctgacacgt ggccaaaagg      1020
     aattttgttc cgcgagttcg aagatctaag tgcaaaaaac tcttggttac cccgattgaa      1080
     tacgccgaca gttatggtgt cgcccgaatt gggagcatca cagttttcca ctccctcaac      1140
     cggagtcaat ctagccgggt aatttcgaat aatgcgcatc ggagcaacgt gattgaacgt      1200
     gtcaacagtt cctgtaatcc agaacgcttt gcctgccgcc ttaagggagc cctcgatcca      1260
     ctcgacacag tcgcgcatgc tggttcctgt catcgaagtc gttctggacc tgttgtcgag      1320
     actggtgaca gggtctccca accttctttc tcaggcaagt acacatccat tagttccaat      1380
     tcttcgcctg atcagcctcc gtattccagc actccttcta atgctgtcca gcataacagc      1440
     aacgacattg gagtactcac cattagacaa tctcagcttg aaacaakcaa tgttcaacta      1500
     acaccgaggc ctccaagact ccaaggaaaa cgcatttatc catctaccgt actaccagga      1560
     cgcactgcag attgcacttt ggaagtctct ggatcctcta gctcagtcgt gccttttcca      1620
     gccagcgttc atcacagtcg tcctggtcct gatgctagat gtggttcaga gatcttccag      1680
     actcctttgt caggcaagtt gttacatcaa gttgtcgctt cttcgaaccc tgatgccgat      1740
     ccgtatttca gcactttgga tacgcttact ggaaacccgg aacgcacctt agaaagccct      1800
     atggaagtcc tcaatccctc cgacgcagtc gtgcctcctg ctgccttcgt tcatcatagt      1860
     cgttccggcc ctgctgtcgg aagtggagag agggtcttcc aacaacctaa caacggcgag      1920
     tattttagta ttgtgaatcc tcagtctttg cctgatgcac aaatgccttc cagacatatc      1980
     ggcgtcccag cagtgcagcg caaccaagat atactaatgt attaccagaa cgttggcggg      2040
     atgaactcat gtgttgacga ctaccgcttg gctgtatcgg atacgtgcta cgatatcatc      2100
     gttctaaccg aaacgtggct tgactctcga acgctgtcca gtcaggtgct tgggatcgat      2160
     tatgaagtgt tccgttgcga tcgaaatcct agcaatagca gaaaatctac aggaggtgga      2220
     gtacttgtgg ctgttcgtca cggtttaaaa gcaaaggcag ttgaaaagga tctgtggagt      2280
     tgcctggaac aagtttgggt atccgtcgag ctaggtgatc gtaccttatt cttgtgtgcc      2340
     ttgtacatcg cgcctgaccg agttcgcgat aacgagctaa tacaagcaca ttgcgactca      2400
     gtttttacta taatggaaac tgccaatcct gttgacgaca tcttcattct gggtgatttc      2460
     aatctagctg gcatttcgtg gaaacgctcg gacaacggct tcctctatcc ggatcctgta      2520
     cgatcgtcac tgcatgcttg cgcagctaat ctcctcgata attacagcac tgccacgttg      2580
     gcacaaatca accatatcgt caacgaaaac aatcgaagtt tggatctttg cttcgtttgc      2640
     ttgcaagata aagctccaat aattgaggcg gcaccttgcg agctggtgaa agtagtccct      2700
     catcatcctc cgttgatcat caccgttgat aataaccact ttcacgattt taacaaccgc      2760
     cccgctaccg tgtcgtacga ttacgcgaaa gctgatcatc gtagcatcgc agatgtgtta      2820
     gccaccatcc actgggagag cattcttgat cacaacgaca tcgaagtagc tgcgcaaact      2880
     tttgcacatg tattgtcata catcattgac aggcacgttc cgaaaagagc acaccacaat      2940
     gcctcccgac ctccttggca aaccagtgaa ctgcggaagt tgaagtcggt caagcgagcg      3000
     gctctaagga agttcactaa gtaccgaaca ccttcatcgc gctgttacta tctaaggtcg      3060
     aactacgagt atcagcgagt cagtcgtcac tgtttccagc agtatcagcg aagcattgag      3120
     cagaaactta aacgccatcc aaagtctttc tggaaatacg tgaatgagca gcgtaaggag      3180
     tctggtcttc catcctcgat ggaatggaat ggtagaaccg caacgtgcct ccaggagata      3240
     tgccagttgt tttcttccaa atttgccagc gtattcagcg acgttcaaat aagtaatgaa      3300
     caagtcatcc tagcagccaa caatgctcct ctaaacggac aaacgctgga caatttcgat      3360
     gttgacgata atgccatttc cagggccgca ttgcaactca agtcgtcgta taaccctgga      3420
     ccagatggaa ttccgtcagt agtcctcaag aagcatatcg acagtctgct tactccgctg      3480
     cacagtttat ttcgtctatc actttccacc ggaatctttc cgtcatgctg gaaagtagca      3540
     aacatgtttc cagtgcataa gaaagggaga aaacgtgacg tagataatta tcgtggcatc      3600
     acatctctga gctcagtttc gaagcttttc gaactcgttg ttattgaacc attgctatca      3660
     cactgcaaac atcagcttga caacgatcaa cacggcttca tcaccggtcg ctcgaccact      3720
     actaatctac tatgcttcac atcgtacata actgatagta tggtcgatag agttcaaact      3780
     gatgcaatct ataccgatct gtccgctgct ttcgacaagt tggaccacaa catcgccatt      3840
     gcaaagctcg acaggttcgg catctgcggt aacttcctgc gctggttcag atcgtatctc      3900
     accgatcgtc agttaaaagt cgtgataggg gactgcagct ccgacagctt tcatgctact      3960
     tccggcatac cacaaggaag tcacctgggt ccagtgattt tcttgcttta tttcaatgac      4020
     gttcattacg tattaaaagc ccctcggtta tcttacgcgg atgatctgaa attgttctta      4080
     cgaatacgct caactgctga ttgtttgtac ctgcaacaac aacttgactt gtttgcaagc      4140
     tggtgctctc taaatggtat ggtggtgaat ccaacaaagt gctccatcat aacgttttcc      4200
     aggaaaaagc gatcaatagc gttcccttat agtttgctcg ggacgagtct cgaacgtgtg      4260
     gatcacatca aggacctagg tgttttcctt gattcacagt tatcattcaa acaacatatt      4320
     tcgtacacgg tcagcaaagc ttcgacaact ctcggtttca tcttcagaat cgccaagaat      4380
     ttctcagatg twtacagcct gaaatcgctt tattgctctc ttgtgcgctc cacgctggaa      4440
     tacggcgctg cggtttggag ccccgcttac aacaatggag cggaaaggat cgaatctgtc      4500
     caacgaagat ttcttcgatt cgcacttcgc aagttaccgt ggagagatcc gtttcgcctg      4560
     ccgagctacg aaagtcgttg tcagctaata gacttggacc ttcttcgctg tagaagggat      4620
     gtcataagag ctttgactat tgcggatgtg ttgcagggac gcatcgactg tggaactatt      4680
     ctggaacaaa ttaatttgaa cgtccgacca cgctcgcttc gcaacaacat catgctaaga      4740
     ctgcctctat ttcgtacaaa ttatggactt cacggtgctc ttagtggact acagcgagtt      4800
     ttcaacagag tatcttcatt gtttgatttc aacattaccc gagagacgct ccgtcgaaga      4860
     ttttcattgt ttttcgctga acgagataat tagtctaagt gtttagttta agttttatcg      4920
     cctgactatt taatatttgt ttttaaattc attcttattg tttttgacgt cactgtactt      4980
     tgttgttaat gttagcatat acttatattt taagacatca ttggggctac tacttgcctg      5040
     ttgatgtagt ataaacaaat aaaca                                            5065
//
ID   CR1_Ele39   repbase;    DNA;    INV; 5224 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele39.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5224
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5224
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >94% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1259
FT                 /product="CR1_Ele39_1p"
FT                 /translation="MTAITACDRCAKTVKRNENFIECMGFCNNVVHMKCDN
FT                 LNIEFIATIRERPNLFWMCDECTKLMKVTRFKSVVSSLGCAISTVIENQMT
FT                 GISELKAEISKNNQQVAEVIVENNNQVAQLANIVNASTPVPAPNRERPSKR
FT                 RREDTETSNAITLGTRNIASDIAVAVKPAANLFWMYLSRFHPSVKEDVVEN
FT                 LAREGLQTREPLKVVSLVKKGADLSSMNFISFKVGVPVELKDVALNPNTWP
FT                 EGILFREFEGQSKNSVWLPPAMSTTTRDGTPFGTPAPVPTPTFDAPISITI
FT                 PTTISDEA"
FT   CDS           1313..5107
FT                 /product="CR1_Ele39_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMEAPNLPNSVAPSAVFAHHSRLGPEVGGGNGVFHPA
FT                 CPGKYFSNKSSSAELSLPQIESNSRTVSTADSILNFWTLRRTIGHASTICG
FT                 HPGRTNESILGGSCSSNSVAPIAASVLHSRPGPVVRCGFGVPNLSCQASTT
FT                 STVHRAIILRLILVRLXVLYDQLIPHHIRSTFTAPASSHELHCGPPGRTVE
FT                 SFLGAPSSSISVVPIAASVPHSRPGPELRCGMGVSQLAFLGKYNGFCDNSL
FT                 LDSDSHSSTTEITPTPTSHQAGIINRSLPTSTVSSNLSGRDSKEADSHRFS
FT                 RRSDIDNHRSAVCRKHXLVIFYQNVGGINSEVNNYYLAVSDTCYDVIVMIE
FT                 TWLDDRTLSNQVFGSDYEVFRCDRNPHNSRKSTGGGVLIAVRRGLKAKIVE
FT                 DDEWISLEQVWIAVELNDRKLYLCAVYIPPDRIRDIDLVRTHCRSISSVVE
FT                 MSSPLDELMVLGDFNLAGISWKPSHGGFLFPDSRQSVLYPAAIHLLDSYSA
FT                 STLSQINHVLNENQRSLDLCFVSTQDTAPFISEAPVPLVKHVSHHPPLIVN
FT                 IPKCLDRDFIDFPEPVSYDFRKADHRSITDVLTSLDWDVIFDTDDANSAAL
FT                 TFSHVLGYVIDRHVPKRSQQLNRLPWQTSELKQLKTIKRAALRRYTKYRTV
FT                 SLKIQYVRLNYEYKRISRLCYSRYQQNIQGKLRSHPKSFWKYVNQQRKETG
FT                 LPSSMTWNNLTASDPQRICQLFSSKFADVFTDETLTDGQIAIAATNVPLYA
FT                 QTLSTIDISVEMISTAASQLKPSFNPGPDGVPSAFLKKHISNLLMPLHRLF
FT                 RSSVSSGIFPSCWKIAHMFPVHKKGSKRNMDNYRGISSLSAVSKLFELIIM
FT                 QPLLSHSKQYLSDDQHGFMVGRSTTTNLLCLTSFITESMVERMQTDVIYTD
FT                 LSAAFDKLNHSIAIAKLHRLGVSGTLLQWFRSYLSGRQLMVTIGDCTSETF
FT                 PATSGIPQGSHLGPLIFLLYFNDVNLVLEAPRLSYADDLKLFLRIQSVNDC
FT                 HFLQRQLGIFANWCSINRMLVNPEKCSVITFSRKKEPIYFDYELSNTTIKR
FT                 TTHIKDLGVILDSQLNYKQHMSYAIDKASRALGFIFRMTKHFSDVHCLKSL
FT                 YGSLVRSILEYCSPVWNPYYNNGVERVESVQRRFLRFALRKLPWSNPFRLP
FT                 SYEDRCRLIGLELLRVRRDTSRALLVADILQGRIDCSYLLQQININVQPRA
FT                 LRNSVMLRTPLHRTNYGLNGAIGGIQRVFNRVSASFDFHLPRSTLRRRFVS
FT                 HFAE"
XX
SQ   Sequence 5224 BP; 1347 A; 1262 C; 1115 G; 1494 T; 6 other;
     gttcstwtac attccggacc gacagttttt gtgtttttta tcgttgtaat atcgagttat        60
     tagtgtctag ctgtgtgtgc tcttgaacat taaatgttta tgctccttag cggattggaa       120
     tacctcaagt gattgatgac tttatagaga aatcgcgctc cacatatttt ctcgtcatct       180
     gaaccgcgag tggcactttt ccactttaac gcaactgatc ccttgcctca ctttcctggt       240
     taccgtactc tatagagtta taccagaatc ctattctgtt gcgtattgcg acgctcggtg       300
     cgccatctat atctgaaacg atcaacgttg ctgattgggc atctaagtgt attggcgata       360
     tgactgctat cactgcctgc gatcgttgcg ctaaaacggt gaagaggaat gaaaacttca       420
     tcgaatgcat ggggttctgc aacaatgttg tgcatatgaa gtgcgataat ttgaatatcg       480
     aatttatcgc caccattcgg gaaagaccca atctgttttg gatgtgtgat gaatgcacca       540
     aactcatgaa agttacccgc tttaaaagcg ttgtttcttc tctcggctgt gcaatctcga       600
     cagtaatcga aaaccagatg accggaatat ctgaattgaa agccgagata tcgaagaata       660
     atcagcaggt tgccgaagtg attgtggaga ataataatca agtcgctcaa ctcgccaaca       720
     tcgtgaatgc atccactcca gttccagcac ctaataggga gcgtccctca aaacgccgtc       780
     gggaagacac ggaaacctca aatgcgatta ctctcggaac aagaaacatt gcctctgaca       840
     ttgcagtcgc tgtcaagcct gcggctaatt tgttctggat gtatttgtca cgttttcacc       900
     ctagtgtgaa agaagatgtc gtggaaaatc tggcgcgtga aggcttacag actcgggagc       960
     cwctcaaggt ggtgtctctg gttaagaagg gcgctgacct tagttcgatg aactttatct      1020
     cgttcaaggt tggtgttcct gttgagctca aggatgttgc attgaatccc aacacwtggc      1080
     ccgaaggtat tttgttcagg gaatttgagg gtcagtcaaa aaactcagtg tggcttcctc      1140
     ctgctatgtc aactacaacg cgcgatggaa cgcctttcgg tactccagca cctgtaccaa      1200
     cgccaacttt cgacgctccg atttccataa cgattcccac taccatttcg gacgaagcat      1260
     aatcaccgct attgacaacc aacaacaaca acccagacgc gccgtagaaa gcatgatgga      1320
     agcccctaat ctccccaact cagtcgcgcc ttctgctgtc ttcgctcatc atagtcgtct      1380
     gggccctgag gttggcggcg gaaatggggt cttccaccct gcttgcccag gcaagtactt      1440
     ttcaaataaa tcttcttcgg ctgaactttc gctgcctcaa attgaatcga attccaggac      1500
     tgtatcaact gctgactcaa tactgaactt ttggactctt cgacgcacta tcggacacgc      1560
     ttcaactatt tgtggacatc caggacgcac caatgaaagc attttggggg gctcctgttc      1620
     ctctaactca gtcgcgccca ttgctgccag cgttctacat agtcgtcctg gccctgtagt      1680
     tagatgcgga tttggagtcc ccaacttgtc ttgtcaggca agcacaacat caactgttca      1740
     tcgagcgatc attctgcgcc tcatactggt tcgccttkca gtactttacg atcaactaat      1800
     cccacatcat attcggtcaa cgttcaccgc acctgcttcc agccatgaat tgcattgtgg      1860
     accaccagga cgcaccgtgg aaagcttttt gggagcccct agttcctcta tctcagtcgt      1920
     gccgattgct gccagcgttc cacatagtcg tcctggccct gagcttagat gtggaatggg      1980
     ggtctcccaa cttgcttttt taggcaagta taacggtttt tgcgacaatt cgctgcttga      2040
     ttctgattcg cattctagta ccaccgaaat cacgcctaca ccaacttctc atcaagctgg      2100
     tatcattaac agaagcttac cgacaagcac tgtttcttcg aacctttccg gacgtgactc      2160
     caaggaagca gattcccatc gcttttcacg cagatcagac atcgataatc atcgttcagc      2220
     cgtgtgtcgt aaacatsaac ttgttatttt ctaccagaac gtcggcggaa ttaattcgga      2280
     agtcaacaac tactatttag cagtttcgga tacatgttac gacgtgattg tcatgatcga      2340
     gacctggctc gacgatcgaa cactatccaa ccaagttttc ggatccgatt atgaggtttt      2400
     tcggtgcgat agaaatccgc ataacagcag gaaatcgact ggaggtggtg ttctaattgc      2460
     tgtccgccgt ggattgaaag cgaaaattgt agaggatgac gaatggatca gtttggaaca      2520
     ggtatggatt gccgttgaac taaatgaccg taagctatac ctatgtgcgg tgtacattcc      2580
     ccccgatcgt attcgagaca ttgatctggt tcgaacacat tgtcgctcga tttcctcagt      2640
     agttgaaatg tcgtccccac tcgatgagct catggtgctg ggtgatttca acctggctgg      2700
     tatttcgtgg aaaccttctc acggcggttt tctctttccg gatagccggc agtctgtact      2760
     ctatccagcg gccatacatc ttctcgatag ctacagtgca tcgactctct ctcaaatcaa      2820
     ccacgtattg aatgaaaacc aacgcagctt ggatctctgt ttcgttagta cccaggacac      2880
     agctccattt atttccgagg ctcctgttcc tttggttaag catgtgtccc accaccctcc      2940
     gctgatagtt aacattccaa agtgtctgga cagggacttt attgatttcc ctgaacccgt      3000
     atcgtacgac ttccggaagg ctgaccatcg tagcataacc gacgtgctga ctagtctaga      3060
     ttgggatgtc atctttgaca ccgatgatgc gaatagtgct gctcttactt tttcacatgt      3120
     tctgggatat gttatagaca gacatgttcc aaaaagaagt caacagctaa atcgtcttcc      3180
     gtggcagaca agtgaattga aacagctcaa aacaatcaag agagccgctc ttaggagata      3240
     cacaaaatat cgcaccgttt ccttgaaaat tcaatacgtt agactgaatt atgagtacaa      3300
     gcggattagt cgtttatgct attctcgtta ccaacaaaat attcaaggaa aactcaggtc      3360
     gcatccgaag tcgttttgga agtacgttaa ccaacaacgc aaagagaccg gccttccttc      3420
     gtcaatgacg tggaacaatt taaccgcatc tgatcctcag cggatttgcc agttattctc      3480
     ctccaagttc gctgatgtgt ttaccgacga aactctaact gatggtcaga tcgctattgc      3540
     ggcgactaat gttcctctgt atgctcagac tctgagtact atcgacatca gcgtcgagat      3600
     gatctcgact gccgcatcac aactgaagcc atctttcaac ccaggtccag acggagttcc      3660
     atcagccttt ctcaaaaagc atatctccaa tctgctcatg ccactgcatc gattattccg      3720
     gagctctgta tccagtggaa tctttccctc ttgttggaaa atagctcata tgtttccggt      3780
     gcataagaaa ggtagtaaac ggaacatgga caactatcgg ggcatttcct ctctgagcgc      3840
     tgtatcgaaa ctatttgagc ttatcataat gcaaccttta ttatcgcatt ctaaacagta      3900
     tctgagtgac gaccaacatg ggttcatggt tggccggtca actaccacca atctgctatg      3960
     tctcacttcg tttattaccg aaagcatggt tgagcggatg caaacagatg tcatatacac      4020
     cgacttgtca gctgctttcg ataagctgaa ccacagtatt gctattgcta aactacacag      4080
     actgggggtg agcggtacat tacttcaatg gtttcgatcc tacctctctg gtcgccagct      4140
     gatggtcacc atcggcgatt gcacatcaga aacctttcct gccacgtctg ggataccaca      4200
     aggcagccat ttaggacctt taatcttcct gctatatttt aacgatgtga acctagttct      4260
     cgaagcccca cgtctttcgt atgctgatga cctcaagctt ttcctgcgaa tccagtctgt      4320
     aaatgattgt catttcctac aacgacaact cggaatattt gcgaactggt gcagcatcaa      4380
     ccgtatgttg gttaatccag agaaatgttc ggtgattact ttttcaagga aaaaagagcc      4440
     catctacttc gactatgagc tgtccaacac gacaattaaa cgtacaactc acataaaaga      4500
     cttaggagtt atccttgatt cgcagctgaa ctacaaacaa cacatgtcat acgccataga      4560
     taaagcatct agggctttag gcttcatttt taggatgaca aaacattttt ccgatgttca      4620
     ttgcctgaaa tctctgtatg gatcgttggt gcgctcgatt ctggaatatt gttctcccgt      4680
     ttggaatcca tattataaca acggcgttga aagagttgaa tcggtccagc gacggtttct      4740
     tcgattcgcc ttgcgcaaac tgccttggag taacccgttc cgtctgccaa gttatgagga      4800
     tcgttgccgg ctgattggtc tggagctgct tcgagttcgt agggatacgt caagagctct      4860
     cctggttgct gacatcttgc aaggccgaat agactgcagc tatttactac agcagatcaa      4920
     cataaacgta caaccgcgag ccctgcgtaa cagtgttatg ttgagaacgc cgcttcatcg      4980
     aactaattat ggcttgaacg gtgcgattgg tggaattcag cgcgttttca accgagtttc      5040
     tgcatcattc gattttcacc tacctcggtc aactttgcgt cggcgctttg tgtcacattt      5100
     cgcagaatag tatatttaag ttttaaaatg tattttaatt ttaattttag ttcattctat      5160
     cattagggct tttgaagtct gttgatattg actgttaaat aaataaaata aaaaaataaa      5220
     aaaa                                                                   5224
//
ID   CR1_Ele4    repbase;    DNA;    INV; 4538 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4538
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4538
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           726..1577
FT                 /product="CR1_Ele4_1p"
FT                 /translation="MLSVCEQCANEFTGTPVKCMGFCSSLFCKKCSGMTDE
FT                 TQRLIDTNNHLVWMCFACCNILSKSRFHKSVASVNAANEKIIDALKTEIKD
FT                 SILQDIRTEIRDNFKTLVEAVPSTPLAIQPPPFRPSSRSKRQRDTDVDDDS
FT                 TNGRPSKQPCATGTRYSEVGSLAINPTSATPEFWLYLSGIQPDVEEDQVRH
FT                 MVQESLATNDLKVVKLIPRNRDLRTLSFVSFKVGVSADLREKAMSADTWPR
FT                 GIRFREFEDHSLTRQGFWRPTSVPVITVPQTIIIPDPQQPSMG"
FT   CDS           1580..4465
FT                 /product="CR1_Ele4_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLNSDTEPPRTSSVLSSFLVYYQNVRGLRTKTSDLFV
FT                 QLSDCDYEVLAFTETWLHPGIANSELSSAYNLYRCDRNASTSNLQRGGGVM
FT                 IAVKKHHRCEIVSFGQGFGLEQVAVRIKLPSKSVYVCCIYISPNSDSSIYD
FT                 QHASCIREVCEKASINDTIVLLGDYNLPHLIWSYDDEINAYLPTNASSESE
FT                 ITLTESVLSVGLFQVLNVLNQNGRLLDLAFVNDAHSVEVLEPPMPLLKVDQ
FT                 HHKPILLNFHLPLKNDDTDYYDIRLDFRHYDVSAVCRSITAINWNVTLNEN
FT                 SVDDAVIEFYNLIHDIIREHVPRKNNQAARSFNQPWWNDDLRHFRNRLRKI
FT                 RKRYFKHRSEENWITLQSMEREYSSMRRTAFREYISGLEHKAKSDPSSFWK
FT                 FVKNQRKPNSVPREISFQNEHASSATDSANLLAAFFKSVFNENSTQVTHEV
FT                 LDGVLSYDLRMPPMEVTVDEVYQRLSDLDTTKGPGPDEIPPLFIKQCAESL
FT                 ALPLSILFNRSLTNRVFPALWKEASITPIHKSGNLTNAENYRGISILSCFS
FT                 KILECFFHEALYRAVLPVIPEVQHGFVKNRSTTTNLMTFVTSVRTKMEKNR
FT                 QVDAVYIDFAKAFDRVPHGLLIAKLQKMGLPEWATSWLRSYLTARWAFVKI
FT                 DGIKSSRFRIPSGVPQGSHLGPLLFILFTADLCGLIQSEKLFFADDLKIFR
FT                 AILSRIDCCIIQRDLDTIVKWCHANGMEVNADKCKCISFSRSRSPMQQNYE
FT                 MASQTLERVSSIKDLGVIVDSRMNFNEHIATTTAKAFSLLGFVRRITKSFR
FT                 DVYAMKSIYCAVVRSVLEYAVQVWAPYHQVQADRIERVQRSFVRYVLRQLP
FT                 WNDPIRLPPYDHRCRLIGLDTLASRRVMAQRIFCFDLLTGNIDCANLLRQM
FT                 NFHAPVRRLRQNTLFYLPTHRTLYGHNNPLHSCCRYFNEVHDKFDFNITKT
FT                 TFKSRIR"
XX
SQ   Sequence 4538 BP; 1241 A; 1068 C; 954 G; 1273 T; 2 other;
     ttgagaacca ctgttctagt cgcttgcgtt gttgtttttg ttgctccgat catttcccgt        60
     attttcacct gctaccgcca ccgcaattca tatttcaccg aaaatcgagt tccaagtacg       120
     acgactcatc accagcatct gcaattccca ctatatctgg tcaggtagga tcgtgatttc       180
     aagttaaaat ccgagcaggc ttgagagtgg aagtagtttg cctcctccgc cattgccgcc       240
     acaaaaactt tcccacctcg ccgctctcca cctgtacccg ttgctgttaa catatcgctc       300
     gctgaatcaa tcacatcgtc ctactcgctc gcaccgctgc atccgttccg cataaccaaa       360
     ccaaaacaaa ccgcaattgc caatctgtaa aatcccccag agcatgtaat atactgccgt       420
     gtactgccct gtgtcatcat ttcaacaatc cgaaacccac cagcatagat tcawcctcag       480
     gaaccatccc atttcatcat tggaccatct ttcgccacca atccgtgcgc catcagagta       540
     agtcgagtgg aattgttttt gtatcgttgc tgctccattg ttgctgtctc gctaccgttc       600
     tgctgtcact gtcaccgctg acaaatcgcc gtttgctgtc ttccaactat tcgctgcgcc       660
     atctagtttt tgagcatcgt aactctttcc gatattaggg tgactcaaat tctttgccgc       720
     aaaaaatgct ttcagtttgt gagcagtgtg caaatgaatt taccggcacg ccagtgaaat       780
     gcatgggttt ctgctcaagc cttttctgta agaaatgctc tggaatgacg gatgaaaccc       840
     agcgcttgat cgacacaaat aatcatctcg tctggatgtg ttttgcttgc tgcaacattt       900
     tgtcgaaatc acgtttccat aaatccgttg catccgtaaa tgcggccaat gaaaaaatca       960
     tcgatgcgct gaaaacggaa ataaaagaca gcattcttca agatattcgt actgaaatcc      1020
     gcgataactt caaaaccttg gttgaagcgg taccctctac acctctcgca atccaaccgc      1080
     caccgtttcg tccatcttca agaagcaaga ggcaacgtga caccgatgtg gatgacgata      1140
     gtactaatgg gcgcccatca aagcagccnt gtgcaactgg cacgcgctac tcagaggttg      1200
     gttccctggc aattaatccc acgagtgcaa caccagagtt ttggttgtat ttgtctggta      1260
     ttcaacccga cgtcgaagag gatcaggtac gtcacatggt gcaggagagc ctagcgacga      1320
     acgacctgaa agtagtgaag ctgattccaa ggaatagaga tcttcgaacg ttatcgtttg      1380
     tctctttcaa agttggagtc tctgctgatt tgagggaaaa ggcaatgtct gctgatacct      1440
     ggcccagagg aattcgtttt cgtgagtttg aagatcatag cctaacacgc cagggttttt      1500
     ggagaccaac atctgttccc gtgattacgg ttccacaaac gatcatcata ccagaccccc      1560
     agcaaccgag catgggttaa tgctgaattc cgataccgaa ccaccacgta cgtcgtctgt      1620
     cctgtcctcc tttcttgtgt attaccaaaa tgttcgtggt ctaagaacaa agacgagcga      1680
     tctgtttgta caattaagtg actgcgatta tgaggttctg gcttttacgg aaacttggtt      1740
     gcatccaggt attgccaatt cagagctgtc ctctgcatac aatttgtatc ggtgtgatcg      1800
     gaacgcctcg acaagcaatc ttcaacgagg gggtggcgtc atgatagctg ttaagaagca      1860
     ccatcgatgc gagatagttt cattcggtca ggggttcggc cttgagcaag ttgcagtacg      1920
     tattaagctt ccatcaaaat cggtctatgt ttgctgtatc tacattagtc ccaactccga      1980
     ttcgtcaatc tatgaccaac atgcttcctg cattcgagag gtttgcgaga aagcatcgat      2040
     caacgacacc atagttttgt tgggcgacta caatctaccg catctcattt ggagttatga      2100
     tgacgaaatc aacgcgtacc taccgacaaa tgcatcttct gaatcagaga tcacgttgac      2160
     ggaatcagtg ctttcagtcg gactctttca agtgctgaac gtccttaatc aaaatggtcg      2220
     tttactcgat ttggcgtttg taaatgatgc tcatagtgtg gaagtattgg agccgcctat      2280
     gcctctgtta aaagttgacc agcaccacaa gccgatcctc ctaaattttc acctaccgtt      2340
     gaaaaatgac gatacggatt attacgacat ccgactcgat tttcgtcatt atgacgtcag      2400
     tgctgtctgt aggagtataa ccgccatcaa ctggaatgta actctgaatg aaaactctgt      2460
     ggacgacgca gtcatcgagt tttacaatct aatccacgac atcatccgtg aacatgtgcc      2520
     tcgcaaaaac aaccaagcag ctcgcagctt caatcaaccg tggtggaacg acgatcttcg      2580
     acactttcga aacaggctac gcaaaatccg taaaaggtat tttaaacata gatccgaaga      2640
     gaactggatt acacttcagt caatggaacg ggagtattca tccatgcgtc gtacagcttt      2700
     ccgtgagtat atatcaggct tggaacacaa agcgaaaagc gatccttcgt cattttggaa      2760
     gtttgtgaaa aatcaacgca aaccaaacag tgtgcctcgt gagatatctt tccagaatga      2820
     gcatgctagt tccgcaacag actcagccaa tcttttagcc gcatttttca aaagtgtgtt      2880
     taacgaaaat tcgactcaag ttactcacga ggtgctcgat ggtgttttgt cgtatgattt      2940
     gcgtatgcca cccatggagg taactgtaga cgaagtttac cagcgtttat ctgacttgga      3000
     taccactaaa ggtccaggtc ccgatgaaat tccaccgctg tttattaagc agtgcgccga      3060
     atcgcttgcc ctacccttat caattctctt taatcgatcg ctgacgaatc gcgtttttcc      3120
     tgctttatgg aaagaagcgt ctattactcc aattcacaaa tcgggcaacc taacgaatgc      3180
     tgaaaattac cgtggtattt caatactgag ctgtttttcc aagattctcg aatgcttctt      3240
     ccatgaggcc ttgtatcgag ccgttttgcc agtcattccg gaggtacagc acggttttgt      3300
     caaaaacaga tctacaacga cgaatctaat gacgtttgta actagtgtta gaaccaaaat      3360
     ggaaaaaaat cgtcaagtcg atgccgtata tatcgatttt gcaaaggctt tcgatagagt      3420
     acctcacgga ttacttattg caaagctaca aaaaatgggc ctccccgagt gggcaacatc      3480
     ttggttacgc tcatatttga ctgcacgctg ggctttcgtc aaaattgatg gtattaagtc      3540
     atcccgtttc aggatacctt cgggtgttcc tcagggaagt catctgggac cgctgctttt      3600
     cattttgttc actgccgatc tgtgtggtct aattcaatca gaaaaattgt ttttcgccga      3660
     tgacctgaaa atcttccgag cgatactatc ccgtatcgac tgttgtatta tacaacgaga      3720
     tttggatacg atcgtgaagt ggtgtcacgc caacggaatg gaagtaaatg cagacaaatg      3780
     taaatgtatt tcattttcac gctcacgttc cccgatgcaa caaaattacg aaatggcatc      3840
     tcaaacactt gaacgtgtca gttctattaa ggatcttgga gtgattgtcg atagcaggat      3900
     gaactttaat gagcatattg ctactactac ggcgaaagcg ttttccttac taggattcgt      3960
     acgaaggatc acaaaatcgt ttcgggatgt ttatgcgatg aaatcgatct actgtgcagt      4020
     agttcgcagt gtgttggagt acgccgtaca agtctgggca ccgtatcatc aagttcaagc      4080
     tgacagaatc gaacgggtgc agcgatcttt tgtgcgttat gttttgcgtc aattaccgtg      4140
     gaatgatccc atcagattac ctccctacga tcaccgttgc aggctaatag gattggacac      4200
     gttagcgtcg agaagagtta tggcacaacg aatcttctgc ttcgacttac tgacaggaaa      4260
     catcgactgc gcaaatcttc ttcgacagat gaatttccat gctccggttc gtcgtctacg      4320
     acaaaatacg ttattttatc taccaacgca tcgtactctt tacggtcata ataatcctct      4380
     ccatagctgc tgtagatatt tcaatgaagt gcatgacaag ttcgatttta atataacaaa      4440
     gacgacattt aaaagtagga taagataatt aatttaagct acagtctgtg caaccattga      4500
     gttgaaggca aagaagaaat aaataaataa ataaataa                              4538
//
ID   CR1_Ele40   repbase;    DNA;    INV; 5055 BP.
XX
AC   .
XX
DT   28-SEP-2010 (Rel. 15.10, Created)
DT   28-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele40.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5055
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5055
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >98% identity, and ~100% identical to the original
CC   sequence in [1]. Closely related to T1 and Q.
XX
FH   Key           Location/Qualifiers
FT   CDS           383..1240
FT                 /product="CR1_Ele40_1p"
FT                 /translation="MTSACDHCAKPIKGEDESVSCMAFCDRMIHLRCSVTK
FT                 LNKNFVNIVQTCPNLFWMCDECVKLMKCARFKATVSSFGDAINAMTERQEL
FT                 AHAELRKEIAKQGEQIAKLSKGIALSTPTLSGSGGLVRQPPLKRRRNEGLS
FT                 TSKPLVTGTRIVADDNVFTEVRTVPEPPEMFWLYLSRIHPSVKSESVEKLV
FT                 KDCVHCQDPVTVVPLVKRGADTSRMSFISFKVGMDSKFRETALNSDTWPQG
FT                 ILFREFEGTGSKNMWLPQLTTPTISITPAMERSPFVTPTTSMDQR"
FT   CDS           1501..4938
FT                 /product="CR1_Ele40_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MHQATLPGRTTESTLGVASYSSSVAPFAASVLQSRPG
FT                 PESSCGLAASQSAISGKYNDDRELSLPDTNQIYSTSGYTSSSSPYPDLTLE
FT                 EVLHGLAEDISLGTPTATNADSSSFDMRSNNEHRFQHPGRTILSTTGAPLS
FT                 PSTVVTMQPALDSRPGPVVGCGEGVSQPVQSGKYTECADSILPDDLIPSSL
FT                 RIYYQNVRGLRTKIESFFLAVTELDYDVIVLTETWLDHRILSAQLFGSHYS
FT                 VFRTDRSALNSNKSRGGGVLIAVSSQFNCCSDPTPVNDQLEQLWVRILLPD
FT                 RNVSIGVFYLPPDMKNDADVIRCHIESIAAVHNNLSENDLILQFGDYNQSD
FT                 IYWAAEADNRLSIDLDRSRMCPASSALLDGFCFHGLSQVNTLTNTTNRTLD
FT                 LVLVCDTVLPNFTLLAAAEALTTLDDHHPAIELIVMCPLPVTYEMSHDYTG
FT                 FNFQKANFESLNVALMSVDWNHLDSIPDINEAVDFFTNSVLQAVTNNVPPR
FT                 RPPSKPPWSNGQLRLLRRRRSAALRCYCNNRSQQTKLAFNEASREYRNYNA
FT                 LLYARYKRRTEQNLRTNPKQFWSFINSKRKENGLPTSMYLDEQSADCASDK
FT                 CELFAAQFQRAFNNFVAAPSQVHVALDDTTRDVFSYEMFEISEREVASAIT
FT                 KLKPSYTPGPDGIPPALLKRCSALLIPLVKLFNRSLGCRVFPRSWKMSFLF
FT                 PIHKKGDKRSVSNYRGITSLCVCSKVFEIIINDSLFNSCKQYISSDQHGFF
FT                 PKRSVTTNLVEFSTQCIRAIDAGKQVDAVYLDLKAAFDRVDHGILLQKLRK
FT                 CGVSDSFIDWFESYLTNRSLCVKIGSNESSSFTNLSGVPQGSNLGPLLFSL
FT                 FINDASLVLPPGTRLFYADDTKVYMIVDSLDDCHHLQRLLNDFEAWCSRNC
FT                 MTLSIEKCQVISFNRKRNPIHFQYTLSGTAIERVQRVRDLGVWLDEEFTFN
FT                 YHFNDIVSRANKQLGFVLKVTEGFSDPLCLRSLYCALVRSILEFAAIVWCP
FT                 FHASWITRIESVQRKFLRHALRNLPWRDPSNLPPYEDRCRLLGIDTLENRR
FT                 CVSQAAFVAKLLQGDIDSPSLLADVSIYAPERNLRRRNFVSLGSRNTLYGQ
FT                 HDPTRYMATKFNEIYHLFDFNITMTTLRNRFAEYFRHS"
XX
SQ   Sequence 5055 BP; 1304 A; 1229 C; 1114 G; 1408 T; 0 other;
     gcgatcgtgt ttgatggttg tttacgttct gtaccgataa ctagtaccgt tttttctcgc        60
     gtaaatttca ctatcggaat tgaatttcgt gtattgtgga agccgtgtga ttgaacaaca       120
     cctgtcgtgt ggacgtttac gcgtagatcg tgaaaacatt gcgaaatcga ccgtcgtaaa       180
     tatactgttt gctgcgaaat attagtgctg tgttttgttt tacttgctgt gctctctgtg       240
     cactttttcg gctaccgtac ttctcccgtg ctgcgataaa caacgagaaa cgagacactg       300
     cagaatccaa attcaagcgt aacatttgaa aagggcctaa ctggaaaacc accgttgctg       360
     cctctaaagt gcctaattca tcatgacatc ggcgtgtgat cactgcgcaa agcctatcaa       420
     aggagaggac gaatctgtct cctgtatggc gttttgtgat aggatgattc atttgagatg       480
     ttcggttacg aagttgaaca agaatttcgt gaacattgtg caaacctgtc caaacttgtt       540
     ttggatgtgc gatgaatgtg tgaaactaat gaaatgtgcg cgtttcaagg ccactgtctc       600
     atcgtttggt gatgcgatta acgcaatgac cgagagacaa gaacttgctc acgccgaact       660
     gagaaaggaa atcgctaagc aaggtgagca gattgctaag ctttccaaag ggattgcact       720
     ttctactccc accctctctg gctccggggg actcgtgcgc caacctccgc tgaaacgtcg       780
     acgtaatgag ggattgtcta ctagcaaacc attagtcact ggcacgagaa tcgtagctga       840
     tgacaatgtt ttcacggaag ttcgtacagt tcccgaacct cctgaaatgt tttggctgta       900
     tctctcacga atccatccta gtgttaaatc agaatcagtt gagaaactgg ttaaagactg       960
     tgttcattgc caggatccag tcacggtagt gccactagta aagagaggcg ctgacaccag      1020
     tcgaatgagt ttcatatcgt tcaaagtcgg aatggactcg aaatttcggg agaccgcact      1080
     taactcggac acatggccgc aaggtatcct gttccgggaa tttgaaggca ccggttcaaa      1140
     aaacatgtgg ctacctcagt tgaccacacc taccatttcg atcactccgg cgatggaacg      1200
     ttccccattt gtgacgccca ccacctcgat ggaccaacgc taattccgca actcagacgc      1260
     atcgtagaaa gctttttgga agcccctaat cgccccaatc cagtcctgcc tcctgctgcc      1320
     tgcgctcatc actgtcgtct gagtcctgtg attggtggtc gaaagggggt cttccatcaa      1380
     gcttgcctag gcaagtattc ttgtaattca aactattcgt tgcgtgataa aatttcctgc      1440
     actcagaacg tttgctgctc agaccacaac aacttaccat cgacgcctac cacacatcta      1500
     atgcatcaag caactttacc aggacgcacc acagaaagca ctttgggagt cgccagttac      1560
     tctagctcag tcgcgccatt tgcagccagc gttcttcaaa gtcgtcctgg ccctgagtct      1620
     agttgtggat tggcggcctc ccagtccgct atctcaggca agtacaatga tgatcgagag      1680
     ctttcactgc ctgatacgaa tcaaatttat agtacctccg gctacacttc atcatcttca      1740
     ccgtatcctg acttgacgtt ggaagaagta ctccatggct tagctgaaga catctctctt      1800
     ggcactccta ctgcgaccaa tgctgattcg tcatcttttg acatgcgtag taacaacgag      1860
     catcgttttc aacacccggg acgcacaatc cttagcacta cgggagcccc tttgtccccc      1920
     tctacagtcg tgaccatgca gccagcgctc gacagccgtc ccggtcctgt agtagggtgt      1980
     ggtgaagggg tctcccaacc tgtgcagtca ggcaagtaca cagaatgtgc tgacagtata      2040
     ctacctgacg atctcatacc ttccagtctg cgcatctact accaaaacgt ccgtggcttg      2100
     cgtacaaaaa tcgagtcctt cttcctcgct gttaccgagc tggattatga tgtgattgtt      2160
     ttaaccgaaa cctggctaga ccaccgcata ttgtcagctc agctatttgg gagtcactac      2220
     tccgtgttca ggacagatcg cagcgctcta aacagcaata aatcgagagg tggcggagtc      2280
     ttgatagctg tttcttcgca attcaattgc tgttcggacc ctacacctgt caatgaccag      2340
     cttgaacaac tttgggttag gatcctgttg cctgacagaa atgtgagcat tggggtattt      2400
     tacctaccac ctgacatgaa gaacgatgcg gatgttattc gttgtcatat tgagtcaatc      2460
     gcagccgttc acaacaacct ctcagaaaac gacttaattc ttcagtttgg tgattataat      2520
     cagtcagaca tctactgggc tgctgaagcg gacaatcgtc tctctatcga tctagatcgc      2580
     tctcgtatgt gcccagcgag ttctgcactt ttggatgggt tttgcttcca tggactctct      2640
     caggtcaaca cattgacgaa cacgacaaac cgtaccctcg atctcgtcct cgtctgtgat      2700
     actgtgttgc ctaatttcac acttcttgca gcggccgaag cactcacgac acttgatgac      2760
     catcatcctg caattgagct gatagtcatg tgcccgttgc cagttacata cgagatgtca      2820
     cacgactaca ctggatttaa cttccaaaaa gctaattttg agtcattaaa tgtcgcatta      2880
     atgtctgttg actggaacca tctggattcg atccctgata ttaatgaagc tgtcgatttc      2940
     ttcacgaatt ctgtgctcca agcagtcacg aataatgttc caccgcgtcg cccgcccagc      3000
     aagccgcctt ggtctaacgg tcaattacgt ctgcttaggc gccgacgttc tgctgccctt      3060
     cggtgctatt gcaataatcg atcgcaacag acaaaattgg cattcaatga agcaagtcgt      3120
     gagtacagga attataatgc tttactgtat gctcgctata aacgaagaac ggaacagaac      3180
     cttcgtacga acccaaaaca attttggtcg ttcataaatt cgaaaaggaa agaaaacggc      3240
     ctaccgacat cgatgtacct agacgagcag tcagccgact gcgccagcga caaatgcgaa      3300
     ctcttcgcgg cacagttcca acgtgctttc aacaatttcg ttgctgcgcc atcgcaagtt      3360
     catgttgcat tggatgatac tactcgtgat gtcttcagct atgaaatgtt tgaaatctct      3420
     gaacgggaag tagcaagtgc gataaccaag ctgaagccct cctacactcc tggaccagac      3480
     gggattccgc cagcgctact aaaaagatgc tcagcgttgc ttataccttt ggtgaagctg      3540
     ttcaatcgtt cacttggatg ccgagtattc ccacgaagtt ggaaaatgtc gttcctattt      3600
     ccaattcata aaaaaggtga caaacgtagc gtgagtaatt accgtggtat tacttcacta      3660
     tgtgtctgct caaaggtatt tgaaattatc atcaacgact ccttattcaa tagctgcaaa      3720
     cagtacatct ccagtgatca gcatggtttc ttcccgaaaa ggtcggtcac tactaacctc      3780
     gttgagtttt caacgcaatg catacgagcg atcgatgctg gtaaacaggt ggacgcagtg      3840
     tatctggact tgaaagcggc gtttgatcgt gttgaccacg gaatccttct acaaaaactt      3900
     cgcaaatgtg gcgtgtccga tagcttcatc gattggtttg aatcatatct caccaaccga      3960
     tcgttatgcg taaaaatagg ctctaatgaa tcgagctcat tcacgaattt atccggagtg      4020
     ccacaaggca gcaatcttgg gcctttgttg ttctcactat tcatcaacga cgcatctcta      4080
     gtcttaccgc ccgggaccag gctgttctac gccgatgata caaaagtcta tatgatcgtc      4140
     gactccttgg atgactgcca tcaccttcag agattgttga atgatttcga agcgtggtgc      4200
     tcacgaaact gcatgacgtt gagcattgaa aaatgccaag ttatatcgtt taaccgaaag      4260
     cggaacccta ttcatttcca atacacgcta tctggtacag cgattgaacg agtacaacgt      4320
     gtccgtgatt tgggcgtttg gttggacgaa gaattcacgt tcaactatca cttcaatgac      4380
     atcgtttcga gggcaaacaa acagcttggt tttgttctga aggtaacaga aggtttcagc      4440
     gacccgctgt gtctgagatc cctttactgc gctctagttc gttctattct ggaatttgct      4500
     gcgatagtgt ggtgtccgtt ccacgccagt tggattaccc gaattgaatc tgttcagaga      4560
     aaattcctgc gccacgccct tagaaatctt ccttggcgtg atcccagtaa cctgcctcct      4620
     tacgaagacc gctgtcgttt attggggatt gatactttgg agaacaggcg ttgtgtatcg      4680
     caagccgctt ttgtagccaa gttgcttcaa ggggacatcg attcgccatc ccttctggct      4740
     gatgttagca tctacgctcc ggagcggaat ctgcgtagac ggaattttgt cagtctcggc      4800
     agtcggaaca ctctatacgg acagcatgac ccaactagat atatggcaac gaaattcaac      4860
     gaaatttatc atcttttcga ttttaacatc actatgacga cgcttcgtaa tcgatttgct      4920
     gaatacttta gacatagtta agtgtgcatt tcatgtaatg ttgatgtttg ttgctcgttt      4980
     tgttttttag ttttacttat attcattaag acaaatttta tgtcagatgg atcaaataca      5040
     aataaataaa taaat                                                       5055
//
ID   CR1_Ele41   repbase;    DNA;    INV; 3426 BP.
XX
AC   .
XX
DT   26-OCT-2010 (Rel. 15.10, Created)
DT   26-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele41.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3426
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3426
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (26-OCT-2010).
XX
DR   [1] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 7
CC   sequences with >97% identity, and ~98% identical to the
CC   originalsequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           104..3277
FT                 /product="CR1_Ele41_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MTPKCNPVMSSNGQQPGRSVESLMEAPGPSDPVERNA
FT                 VTVLHSRPGPAVGCGTGVFQSATSGEYSSIIDNAPSPSIVLNSRTCNARKM
FT                 PISVNAKKSDDLLIYYQNAGGMNCDVDKYLLATSDDCYDIIVLTETWLDTR
FT                 TISTQVFTPEYEVFRCDRNPRNSRKSTGGGVLIAVKKKLKANIIENDLWCS
FT                 TEQLWVHVQFFGHSLFLCGIYIPPDRARDETLIETHLQSVTSVIEIAKPMD
FT                 EIVVLGDFNLPGISWISSGNGFLHPDMNHSHVHSAASRLLDGYSTATLRQI
FT                 NHVTNENLRSLDLCFVSAQDVAPPISNAPSSLVKQVNHHPPLVLKLIVQHY
FT                 STSESIAQVTYDFTKADHEGILEFLAAVEWTEVLDTRDVDNAVSTLAHILG
FT                 HVIERHVPKKTLASKGLPWQTRELRTMKTAKRTALRRYTKNPTPRMRDQYV
FT                 RLNAAYKRTSRHCFNRYQQQVQRDLTAKPKSFWRYVNEQRKVSGLPPSLFL
FT                 NGDVASEPQSVCQLFAQKFSSTFCDEVIPEVLVTQAASNVPLVNDSWATLT
FT                 VDDDMISRAASQLKSTMKPGPDGIPSAFLKRHIDSLLVPIRHVFNLSLISG
FT                 AFPSLWKNASVFPVHKKGERKDVNNYRGISSLCAISKLFELVVMDPLMTHC
FT                 KNHLSDDQHGFISGRSTATNLIRLTSHIADSFAEGAQTDAIYTDLTAAFDK
FT                 INHAIATAKLERFGISGNMLRWLHSYLIGRKLTVTIEGFQSNEFLATSGIP
FT                 QGSHLGPLIFLIYFNDVHYTLKGPRLSFADDLKIYRRIHSDYDAMCLQQDL
FT                 HAFASWCTLNRMTVNPGKCSVISFVRIRRPVVFRYELYNTVIQRVDSVKDL
FT                 GVILDPQLTFKHHVAYVVAKASRTLGFIFRVAKDFTSVYCLKSLYCSLVRS
FT                 TLEYCSVVWNPYYQNGSDRIESIQHRFIRFALRQLPWRDPLRLPSYRSRCQ
FT                 LIDLETLQLRRDIARAMVVADTLQGRIDCPVLLQSLDLNVRPRVLRNNTML
FT                 RLPFRRTNFGQQSAYIGIKRVFNRVASVFDFHLSRQTIRRKFKTVFLSFLD
FT                 E"
XX
SQ   Sequence 3426 BP; 889 A; 856 C; 736 G; 944 T; 1 other;
     ctcccagcct gcacttccag gcaagtatgc gtgttatacc agacgttctt tscgtgatga        60
     attgccaaat ttcagctctc tatccgccgc tgatgtaaca tcaatgactc ctaaatgcaa       120
     cccagtcatg tcttcgaatg gtcaacaacc gggccgctct gtagaaagcc tcatggaagc       180
     tcccggccct tccgacccag tcgagcgtaa tgcagtcacc gttcttcata gccgtcccgg       240
     tcctgcggtc ggttgtggta cgggagtctt ccaatctgca acctcaggcg agtactcttc       300
     cattattgac aatgctccct cgccgtccat tgttttaaat tccagaacat gtaacgctcg       360
     taagatgccg atatctgtga atgctaagaa gagtgacgat ttgctgattt attatcagaa       420
     cgcaggtgga atgaactgcg acgtagacaa atacctctta gcgacatccg acgactgcta       480
     cgatattatt gtgctgactg agacctggct cgacacacgc actatttcaa cccaggtttt       540
     cacaccggaa tacgaagtct tccgctgtga ccgcaaccca agaaacagtc gtaagtctac       600
     cgggggtggc gtcctgatcg cggtgaagaa gaaacttaag gccaatatta tcgaaaatga       660
     tctttggtgt agcaccgagc aattatgggt gcacgttcag ttctttggtc acagcttatt       720
     tctgtgcggg atttacattc cacccgatcg agcgcgtgat gagacgctga ttgaaactca       780
     cctgcagtct gttacgtccg tgatcgaaat cgcaaagccc atggatgaaa tcgttgtgct       840
     tggcgatttt aacttacctg gaatatcttg gatatcatct ggcaatgggt tccttcaccc       900
     agatatgaac cattcacacg tccactccgc cgcttctcga cttctcgatg gctacagtac       960
     agcaactctt cgacagatca accacgtaac caatgagaat ctccgaagcc tcgatctttg      1020
     cttcgtcagt gctcaagatg tcgctccgcc catatccaat gcaccctcat cattggtaaa      1080
     gcaagtcaac caccatcctc ctctggtgct caagctaatc gtccagcatt acagcacaag      1140
     tgaatcaatc gcccaagtga cgtatgactt cacaaaagct gaccatgaag gtattctgga      1200
     attcctcgcc gccgttgaat ggacagaagt tctcgacact cgtgacgtgg acaatgctgt      1260
     ttcgactctt gctcacattc tcggacacgt gatcgagagg catgttccca aaaaaactct      1320
     tgccagtaag ggtttgccat ggcaaaccag ggagcttcgc acgatgaaaa ccgctaagag      1380
     aaccgcatta agacgctaca ccaaaaaccc tactccgcgg atgcgcgacc aatatgttag      1440
     gttaaatgcc gcctataaga gaacaagtcg gcattgcttc aatcgctatc agcaacaagt      1500
     tcaacgagac cttacagcaa aaccgaaatc tttttggagg tacgtcaatg agcaaagaaa      1560
     agtgtctggt ctgcctccat ctttgttttt aaatggagat gtcgcttcag agcctcaaag      1620
     cgtttgccaa ctcttcgctc aaaagttttc tagcaccttt tgtgatgaag taattcctga      1680
     ggtactcgtt actcaagccg ccagcaacgt tccgttggtc aacgattcgt gggctaccct      1740
     caccgtcgac gatgacatga tttcccgagc cgcctctcaa ttgaaatcga cgatgaaacc      1800
     tggtccggat ggcattcctt ctgctttcct gaagaggcat attgatagct tgctcgttcc      1860
     tattcgacat gtgtttaatt tatcccttat tagcggagcc tttccgtcat tatggaaaaa      1920
     tgcttccgtg tttcccgtgc ataaaaaggg cgaacgcaaa gacgtcaata attaccgagg      1980
     gatctcgtct ttgtgtgcca tctccaaact gttcgagctc gtggtaatgg acccactgat      2040
     gacacattgt aagaatcacc taagcgacga tcaacacgga ttcatctcgg gtagatcgac      2100
     ggccaccaat ctaatacgcc taacgtcgca cattgctgac agtttcgcag agggagcgca      2160
     aacggacgct atctataccg acttgacagc cgctttcgat aagattaacc acgctatcgc      2220
     aacggctaag ttggaaaggt tcggcattag cggcaacatg ctacgctggc tccattcgta      2280
     cctcattgga cgtaaactga cggttaccat tgaaggtttt caatccaatg aatttctagc      2340
     tacatccgga attcctcaag gcagccactt gggaccgtta atatttttga tatacttcaa      2400
     cgatgttcac tacactctca aggggcctcg gttatccttc gcagatgatt taaagatcta      2460
     tcgacgaatt cattcggact acgacgcaat gtgccttcag caggatcttc atgcatttgc      2520
     cagctggtgc accctgaatc gaatgaccgt taatcccgga aaatgttctg tgatttcttt      2580
     tgtccgtatt cgtagacctg tagttttccg gtacgaactc tacaacactg tgattcagcg      2640
     cgttgatagt gtgaaagatc ttggagtgat tcttgaccca caactcactt ttaagcatca      2700
     tgtggcgtac gtagttgcga aggcatcgag gacattgggc ttcatatttc gcgttgccaa      2760
     agattttact agcgtatatt gtctgaaatc gctgtactgc tcgctggtcc gatcaacact      2820
     tgaatactgc agtgtagttt ggaatcccta ctaccagaac ggctctgaca gaattgaatc      2880
     aatacagcac cgctttattc gctttgctct ccgtcaactt ccatggcgtg atccacttcg      2940
     gttgccgagt tacagaagtc ggtgccaact aattgatctt gagactcttc agctacgtag      3000
     ggatatcgca cgagctatgg ttgtagcaga cacattgcag gggagaatcg actgtcctgt      3060
     acttctgcag tcactagatt tgaatgtccg cccaagagta ttacgaaaca atacgatgct      3120
     tcgacttcct ttccggagaa caaactttgg acaacagagc gcctacatag gcatcaaacg      3180
     agtgtttaac agggtcgctt ctgttttcga ctttcacctc tcccgacaaa cgatccggag      3240
     aaagtttaaa accgtgtttc tttcatttct tgacgaataa tgttgtttta tgttgttgta      3300
     tttttatcgt tgattgtaat tttgttagta actgcttcat atttgttaaa ctagaataag      3360
     atatacataa gttatacatc attgggacct gttttgtctg ttgatgtcat ccaataaata      3420
     aataaa                                                                 3426
//
ID   CR1_Ele42   repbase;    DNA;    INV; 5865 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele42.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5865
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5865
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 10
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           605..1468
FT                 /product="CR1_Ele42_1p"
FT                 /translation="MVCKRCQKKVSGDDGVVCRGYCGASFHAFCVNVDEPL
FT                 RKQLGQYRNNVFWMCDGCANLFGNAHFRALMTGFDEKSSMVPSAIQSMQCE
FT                 IEKLHASVKTLSAKVDGMPTTPTPFSTPNPWPAIHRINRFTKSAKRFRDTD
FT                 GNPVNVEDGSMKMGTKTTNPCSTICLDSRQEDELIWIYLSAFHPNTTESQI
FT                 SSFVTECLELTANAHLKVIKLVPKGKDLNTLNYVSFKIGLSVQFKEKAFSC
FT                 ESWPENIRFRQFEDNRAKNLPRVISLSSTVQQGITVPPPMDSSSLDI"
FT   CDS           1510..5754
FT                 /product="CR1_Ele42_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGTPSDPVTVEPNHHATSNASVFASCHLRRPGPVYGG
FT                 LEGVSQPAFSGKYAYHNGHSLGDISNNSSSSENDDPPANLHQNSFSTSQFH
FT                 LPGRNGEGLMEAPGPSDPVEQSTASVLHNRPGSVISCGAGVFQSVSSGCLT
FT                 RHSHYGPKLINPSSSSFMPSSLTSSKAPGCTPVSLMEAPYPLVTVEPFLPA
FT                 TSSHPGPVYECGDGVFQTTTAGKYSHNMNILPPVTSVASSCSSSTSSACGL
FT                 PITDILDVSISAKWTPGRTLAASHKEAPIPLSVVEPPLPATSSRPGPTSEL
FT                 GDGVFRTQISGKYDDFMSFPYPEPIVASSPSTIFAPSNAILSQQPTSIVRS
FT                 CPDENIQSHNLDNRIPSSQPPLSANWTPGRILAASLEEAPIPLSVVEPPPP
FT                 ATSSRPGPTSELGDGVFRTSTSGKYDLHPVFPEPESISNSSTSNLVLPPEA
FT                 TSRNSTSAPASSDVLLYYQNVGGINTSLAEYQAAVSDGCYDVYALTETWLN
FT                 GNTLTCQLFDASYSVYRQDRSSLSSNKSTGGGVLLAVRSNFKSRSLSPPNN
FT                 ALVEQLWVAISTVDGTLFICVVYIPPDRVNDAALIDKHVESLSWITSQLGA
FT                 RDKVIILGDFNMGSISWQRHSLGFYYPIASRSSISQTSRDLLDAYSTAGLK
FT                 QAIGIENEHNRMLDLCFVSDQLLESCTIIQAPSPLVKLCRHHPPILMNFQI
FT                 YPIRHFHNTAESISYDFNKANFNGMNAFLAHVDWDEILRDYDANLAASTVS
FT                 GILLYAIDQFVPVKSRPEAAKPPWSNAHLKNLKRVKRAALRRHSKFRTDTT
FT                 RASYMKANQDYQQLNDHLYNAYQNRMQRQLRTNPKSFWRYVNDQRKESGLP
FT                 STMNDGSSVADSIGGIADMFRSQFSRVFTNEHLDSHDVALAIRNVPRLPGS
FT                 GQLCIINDDMVIAASKEIKSSTGYGPDGIPSLIIKRCVDTLAKPLTAVFNL
FT                 SLSTGVFPNCWKHSYVFPVFKKGCKSSVSNYRGIAALSSISKLFEVIVLRQ
FT                 LVQSYAHYISEDQHGFMPKRSTTTNLTCFISFVTRQIESGQQVDAIYTDLS
FT                 AAFDKMNHQIALAKFDKLGMNNTLLTWLRSYLTGRSMSVKIADHVSLPFPA
FT                 WSGVPQGSHLGPFLFLLYMNDVNFVLKCLKLSYADDVKLYYTIKQPQDTVF
FT                 LQRQLETFAEWCRLNRMLLNTSKCSVISFGRKQSMIPFAYALSGEQLQRES
FT                 TIKDLGIMIDSKLTFKDHVSYIVSKASAQLGFVFRFAKKIKDIYCLKSLYC
FT                 SIVRPILEYSSVVWSPYYQNEIQRIETVQRKFIRFALRHLRWRDPLNLPSY
FT                 SSRCQLINLDSLEARRNVAKACFIGDLLQGNMDCPALLNMLDINTRRRNLR
FT                 THSFFNLSVTRTNYSLHEPVRSMSRLFNQCYFVFDFNVSRERNKCNFRRVL
FT                 C"
XX
SQ   Sequence 5865 BP; 1516 A; 1467 C; 1219 G; 1662 T; 1 other;
     ggaattattt gaaatgttct caatatattg actcgaataa cccctcgagg agcttttgga        60
     tctattcttt ggaataaccg tagacaaaat ggcgttgaaa ttcttgtcaa gttttcttgg       120
     gagaaattct gtgggaaact ttggatatct ctttgattaa cgactgtaaa attcggttgg       180
     atagttagtg aaaaattatc tggaggaagt cctaagatag tctttgttca aagtactgcc       240
     tgagaaaaat ttctagaggt attaacgttg aaatgtcttc ggccctgtgt ggtttgtgta       300
     tagtttgctt tatatatcgc acgtttcttt atcgctgtta attgtgtaat tggccgatta       360
     taaataccca gaaaagtttg cgccgtctcg tattgctacc cgccgcgttt ttagcataaa       420
     gttgtccgtt aagcttcgtt tgtttcgtga tatttcacgg attttgtata cactttgcta       480
     caacaagcgg tggtgattgt ttttactcgc cttctcgcct acgtcatcgt ttctgccaag       540
     atctgctttg ctaaacttac accgtatcag tcaaattgct tgtagcctac ctaaaggcgc       600
     tatcatggtt tgcaagcgtt gccaaaagaa agtatccggc gatgatggtg tcgtctgtcg       660
     tggctattgc ggtgcatcgt tccacgcttt ttgcgtaaac gttgatgaac ccctccgaaa       720
     gcagctcggg caatatcgaa acaacgtttt ttggatgtgt gatggatgcg cgaacttatt       780
     tggaaatgca cattttcgtg ctttgatgac cggatttgac gaaaaatctt ctatggtgcc       840
     ttctgccata cagtctatgc aatgcgaaat tgaaaagctc cacgccagtg tgaagacctt       900
     gtcggctaaa gtcgatggga tgccaactac tcccacacca ttctccacac ccaatccctg       960
     gcccgcaatt catcgcataa accgcttcac aaaatcagct aaacgcttca gggacactga      1020
     tgggaacccc gttaacgttg aagatggctc aatgaaaatg ggaacgaaaa cgacaaatcc      1080
     ttgttcaacc atttgtcttg attcacgcca agaagatgag ttaatttgga tctacttgtc      1140
     cgcgttccat ccgaatacaa ctgaaagcca aatttcctcg tttgtcacgg agtgcttaga      1200
     actgacagcc aacgctcatc tcaaagtgat taaactggtt ccaaaaggaa aggatttgaa      1260
     cacgcttaat tacgtgtcct ttaaaattgg gttgagcgtc caattcaagg aaaaagcttt      1320
     ttcgtgtgaa tcgtggcctg aaaacatacg gtttcggcaa tttgaggata atcgagcaaa      1380
     aaacttaccg agagttatca gcctatcttc aacggtacaa cagggaataa ctgttccgcc      1440
     tcccatggat tcttcgagct tggacatcta gggatcagca tctcaccagg acgcacgcaa      1500
     cgaagcacga tgggaactcc ttctgacccc gtaacagtcg agccaaatca ccacgccacc      1560
     tcgaatgcct ccgtttttgc atcctgccat cttcgtcgtc ctggtcctgt ttacggcggt      1620
     ttggaaggag tctcccagcc tgcattttca ggcaagtatg cgtatcacaa cggtcattca      1680
     ctcggtgaca tttcaaacaa ttctagctct tccgaaaatg acgatccgcc ggcgaatttg      1740
     caccagaatt ctttttcaac gtcccagttc catctaccag gccgcaatgg ggaaggcctt      1800
     atggaagctc ccggcccgtc tgacccagtt gagcaaagca ccgcctccgt tcttcacaat      1860
     cgtcccggct ctgtgattag ttgtggtgcg ggagtcttcc aatctgtttc ctcaggatgt      1920
     ctcacccgtc actcccacta tggacctaag ctaatcaacc caagtagttc gtcattcatg      1980
     ccttcatcgc taacttcatc caaagccccg ggatgcacgc ctgttagcct catggaagcc      2040
     ccttatcccc tcgtcacggt cgagcccttc ctgccagcga cctccagcca tcccggtccc      2100
     gtgtacgagt gtggagatgg ggtcttccaa accactactg caggcaagta ttcacacaat      2160
     atgaacatac ttcctccggt aacatctgtc gcttccagct gttcatcttc aactagttca      2220
     gcgtgtggtt tgcctatcac tgacattttg gacgtttcga tttccgcaaa gtggacaccg      2280
     ggacgcacac ttgccgctag ccacaaggaa gcccctattc cactcagcgt agtcgagcct      2340
     ccgctgccag cgaccagcag ccgtcccggt cctacgtctg agctgggaga cggggtcttc      2400
     cgaactcaaa tttccggcaa gtacgatgat tttatgagct ttccatatcc tgaaccgatt      2460
     gttgcttcta gtccatctac aatatttgct ccatccaacg ctattctgtc acaacaacct      2520
     acgagcatag tgcgctcatg tcccgacgag aacattcagt cccataatct tgataatcga      2580
     attccatcaa gccaacctcc tctttctgct aactggacac cgggacgcat acttgccgca      2640
     agcctcgagg aagcccctat tccactcagc gtagtcgagc ccccgccgcc agcgaccagc      2700
     agtcgtcccg gtcctacgtc tgagctggga gacggggtct tccgaacctc cacctccggc      2760
     aagtacgatt tacatccggt atttcctgag cctgaaagta tctccaattc cagtacatca      2820
     aatttggtgc tgccaccaga agcaacttct cgaaatagta catcagcacc agcttcgtcc      2880
     gatgtcctgt tgtactatca aaacgttggc gggattaata cttccctcgc tgaataccaa      2940
     gcggccgtga gtgatggttg ctacgacgtt tacgccctta ccgaaacctg gctcaacggt      3000
     aatactctga catgtcaact gtttgacgcc tcatattccg tttatcgaca agaccgatca      3060
     tctttaagca gcaacaaaag taccgggggt ggtgttttgc tagctgtccg ctctaatttt      3120
     aaatcgcgtt cgcttagtcc tccgaacaat gctttggtgg agcaattatg ggtcgccatt      3180
     tctactgtcg atggaacatt attcatctgc gttgtctaca tcccgccaga ccgcgttaac      3240
     gatgcagcat taattgacaa acacgtcgag tcgcttagct ggataacttc tcaacttgga      3300
     gctagggaca aagtgatcat cctgggtgac tttaacatgg gctcaatctc ttggcagcgt      3360
     cattctcttg gcttctacta cccgattgcc tcaagatctt cgattagcca gacgtctcgt      3420
     gatctgcttg atgcatacag cactgctgga ctcaagcaag ccattgggat tgaaaatgaa      3480
     cacaatcgga tgctcgattt gtgttttgtt agcgaccagt tattggagag ctgcacgatt      3540
     atacaagctc catcgcctct cgtcaaactc tgcagacatc atccccccat tctgatgaat      3600
     ttccaaatat atccgattcg tcacttccac aacactgccg aaagcatctc ttacgatttc      3660
     aacaaggcta atttcaacgg tatgaatgct tttcttgcgc acgttgattg ggacgagatt      3720
     cttcgggact acgatgccaa tcttgcagca tcgacagtgt ctggaatttt gctgtatgct      3780
     atcgaccagt tcgttcccgt waaatccaga cctgaagctg caaaaccacc ctggtctaat      3840
     gctcatctca agaacctgaa aagagtgaag agggctgcac ttcgacgaca cagcaagttt      3900
     cgtacggaca ccacgagagc tagctatatg aaggcgaacc aagactatca gcaactcaac      3960
     gaccatttgt acaacgccta ccaaaaccgt atgcaacgtc aactaaggac taatcccaaa      4020
     agtttttggc ggtacgtcaa tgaccaacgg aaagaatccg gattaccctc aacaatgaac      4080
     gacggttcat cggtcgccga ctccatcggt gggattgccg acatgtttcg ttcacaattc      4140
     agtcgtgttt tcaccaacga acacctcgat tcacatgatg ttgcccttgc tatcaggaac      4200
     gttccacgtc ttccaggttc tgggcaactg tgcatcataa acgatgatat ggttatcgca      4260
     gctagtaagg agattaaatc gtctacggga tatggaccgg atggtatacc atcacttatc      4320
     ataaaacggt gtgtggacac gcttgcaaaa ccgttaactg cagtattcaa tctttccttg      4380
     tcaaccggtg tcttcccaaa ctgctggaaa cattcatacg tattcccagt tttcaaaaaa      4440
     ggctgcaaaa gttcggtttc aaattaccga ggtatagccg ctttgagctc aatctctaag      4500
     ctatttgagg tgattgtgct acgtcagtta gttcagagct acgcacacta catatcagaa      4560
     gaccagcacg ggttcatgcc caaacgttcg acgactacta acttgacatg tttcatttct      4620
     ttcgtgactc gccaaattga aagtggccaa caagttgacg ccatttatac ggacctttcc      4680
     gcggcatttg ataaaatgaa tcaccaaatc gccttagcta aattcgacaa acttggcatg      4740
     aataatactt tactcacttg gcttcgatcc tatttaactg gtcgtagcat gtcggtaaaa      4800
     attgcagatc atgtttcgtt gccctttcct gcttggtccg gcgttccaca aggcagtcac      4860
     cttggcccat tcttgttcct tttgtatatg aacgatgtca atttcgtcct caaatgtttg      4920
     aagttgtcat atgctgatga tgtaaaactt tactacacga taaagcagcc acaagatact      4980
     gtgttcctgc aacgacaact cgaaacattt gctgaatggt gccgcttaaa tcgaatgttg      5040
     ctgaacactt cgaaatgttc ggtaatttca tttgggcgca aacaatctat gatcccgttt      5100
     gcctacgcct tgtcaggtga gcaactgcaa cgcgaatcga ctatcaagga tttgggaatt      5160
     atgatagatt ccaagctgac ttttaaggac catgtttcat acattgtgtc gaaggcttct      5220
     gcacagctag gtttcgtgtt tcgattcgcc aaaaaaatca aggatatcta ctgtctgaaa      5280
     tcattatatt gctcaatagt acgccctatt ttagagtatt cttcggttgt ctggtcaccg      5340
     tattatcaaa atgaaattca gcgcatcgaa actgttcaac gaaaattcat ccgtttcgct      5400
     ttacgtcatc tcagatggag ggacccgttg aacctgccta gttatagcag ccgctgtcaa      5460
     ttgattaacc tcgactctct cgaagcaagg cgcaacgttg ccaaggcctg ttttattggc      5520
     gatcttctgc aaggcaacat ggattgccct gcgttgctca acatgctaga catcaataca      5580
     cggcgccgca atctccgaac gcactcgttt ttcaaccttt ctgtcactcg tactaattat      5640
     agccttcacg aaccagtccg aagcatgtcg cgtttattca atcagtgtta ttttgtattt      5700
     gactttaatg tatcgcgtga aagaaataag tgtaatttta gacgtgtctt atgttagtat      5760
     aaatttgact tcatcacttt atgtcttagt tttaagaatt ttgtcattgg ggtgaccatt      5820
     ttacctgttg actaataata aataaataag taaataataa ataaa                      5865
//
ID   CR1_Ele5    repbase;    DNA;    INV; 4866 BP.
XX
AC   .
XX
DT   25-OCT-2010 (Rel. 15.10, Created)
DT   25-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4866
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4866
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (25-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 18
CC   sequences with >94% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           182..931
FT                 /product="CR1_Ele5_1p"
FT                 /translation="MEQTVVIKPKVSQDVNTTKSEIRHKLDPVAHSVKDVF
FT                 YSNNGNVAIRCDSHSAAMKLLDSAKSTMSANYEIDIQKALRPRLKIVGFST
FT                 DFDADSFLTKFRKQNDLPDCSFIQIVRFTKSKRDKENPMSVILEVDALSFK
FT                 QLIKAKIAYVGWERCPVSESIDVLRCYRCSEFGHIASICTKPLCCPKCTEC
FT                 HEVSECTSEYEKCINCTIVNKDRKLPADQQLEVNHCSWSTECPMYLKRLNK
FT                 SRQRIDYSS"
FT   CDS           935..4453
FT                 /product="CR1_Ele5_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QYISEGDPHGCTLVAIQLPSGKCVNSICTAEAIPDTA
FT                 LRSSKIDFQTKFPASFDIPTTCSPIGNTVDNSPSGSNYLLNDLTGSAHPKL
FT                 FPTDESSLDGFSYQLNELAGPGKDNTCICPAEAGNDATRTLIRPVLQINSV
FT                 VPTDLDLLSSGANFVSSGKHASSICPAEAGEQSTPNLTHSTLQTCQASSCS
FT                 AISTDLHQLTEPHNTNVTSANRITVYYQNIRGLRTKIDDFFLAAYESSYDV
FT                 IVITETWLNDQIFSPQLFGDRFTVYRTDRNSSTSSKKRGGGVLIAVTNRLS
FT                 SALPSIAIDSTVEHLWVKIFVADNVVAVGAVYLSPEIANDATVIEKHLDSA
FT                 LNITNSLKPGDCHLLLGDFNQSSIIWTHSSSGYLYADPRDSHFSPGSCSLL
FT                 DGFSQLDMKQLNYIEHHRGRILDLIFANSDIASLCSVQRANDPLLEEDPYH
FT                 PALVTSLTCNCPVLFDEIETPNEFDFQKANFSTLDYDISHIDWTPLLDASD
FT                 VDGSVDFFTYTLKQLFINNVPVPRPRRKPPWSNNHLRNLKRHRSNALRKYT
FT                 NLKTTESKRHFNIASNRYRSYNRFLHARYTNRIESNLKHNPKKFWSFMNAK
FT                 RKEAGLPTSVFLNEEVADSCDDMCNLFAKHFSDVFRKESVDIHRINNALAD
FT                 VPLNALNMEYFQFSENEVLNALNKLKSSSTAGPDGIPSIVLKKCASSLCAA
FT                 LTIICNRSIAESRFPTKWKESIMFPVYKKGDKRDVKNYRGITSLCAGSKLL
FT                 EILVSDVLLSASKSYISPDQHGFFPGRSSETNLVQFTSFCLRNIEEGNQVD
FT                 AVYTDLKSAFDLVDHLILIAKMERLGAPSFFTRWLESYLRNRRLSVKIRAV
FT                 QSYYFTNNSGVPQGSNLGPLLFSIFINDVCCLLPAGFRLVYADDLKIYLVV
FT                 KNHEDCIELQRLVDLFEDWCIRNHLVISAQKCTVISFNRKKCPITWDYQIC
FT                 GTLLSRVTVVKDLGVLLDTNLSFRNHFSNIIARANRNLGFIMRSTGDFSDP
FT                 FTLRSLYYSLVRSTLEYACVVWSPYTNVWILRIEAIQAKFTRYALRLLPWN
FT                 DIANMPAYEIRCRLLGMESLRNRRNSLRALFAGKLLLAVIDAPNILERLNI
FT                 NAPSVSLRSRDPLRPDFRRTDYGINEPITALCREFNKVYHLFDYSISASVF
FT                 KSRLRRFSLHPESE"
XX
SQ   Sequence 4866 BP; 1396 A; 1070 C; 942 G; 1458 T; 0 other;
     aactgccaca tctaatgatt tgcgtcaagc tcttgatgac ggccagtggc tgcgctctgg        60
     aaaaaggcgc gtgcggtccg gtcagaacaa cactttcaaa tctcccgtta tagtaacacc       120
     atctgctcgt cctgctgata atgcgatatt gccgaatggt aaagccaaat ctgttatttt       180
     gatggaacaa actgttgtta tcaagcccaa ggtttcacaa gacgtgaata caactaaatc       240
     tgaaatccga cacaagctcg atccggttgc tcattcagtt aaagacgtct tttacagcaa       300
     caatggaaat gttgctatcc gatgcgattc tcactccgct gcgatgaaac tccttgattc       360
     ggctaaatcc actatgagcg ccaactacga aattgatatc caaaaggctc ttcgaccaag       420
     actgaaaatt gtcggctttt ctactgattt tgatgctgat tcatttttaa caaaattcag       480
     aaaacaaaat gatctgcctg actgctcctt catacaaatt gtgcgattca caaaatccaa       540
     aagggataag gaaaatccta tgtcagtcat tcttgaagtg gatgcattaa gttttaaaca       600
     gctgattaaa gccaaaattg cgtatgttgg atgggaacgc tgcccagtct ctgagtcaat       660
     tgatgtttta cgttgctatc gctgctcaga attcggtcac atcgcatcta tctgtacgaa       720
     gcctctatgc tgtcccaaat gtaccgagtg tcatgaagta tcagagtgca cttctgagta       780
     cgaaaagtgc atcaattgta ctattgtgaa caaagacagg aaattgccag ccgatcagca       840
     gctcgaagtt aatcattgtt cttggagtac ggaatgcccg atgtacctaa aacgtttgaa       900
     caagtcccgc caaaggatcg actattctag ctagcaatac atcagcgagg gagatcctca       960
     tggctgtact cttgtagcta ttcagctgcc atcaggtaaa tgcgtgaata gtatatgtac      1020
     agccgaagct attccagata ctgcactgcg ctcaagtaaa attgacttcc agacaaaatt      1080
     tcccgcttcg ttcgacattc caacaacttg ttccccaatt ggtaacaccg tagacaattc      1140
     tccctctgga tccaattatc tgctgaatga tctaactggt tctgcccacc cgaaactatt      1200
     ccctactgat gagtcatcgt tggatggatt ttcttaccag ctgaacgaac tggctggtcc      1260
     aggtaaagat aacacatgta tatgtcctgc cgaagcaggg aatgatgcta cacgcaccct      1320
     catacgacct gtgttgcaga tcaactccgt tgtccccact gacttggacc tactatcatc      1380
     aggcgcaaac ttcgtttcct caggtaaaca tgcatcaagt atatgtcctg ccgaagcagg      1440
     tgaacagtct acacccaacc tgacccacag cacattgcag acttgtcagg cgtccagctg      1500
     ttctgctatt tcgaccgatc ttcatcagct cactgaacca cacaacacca acgtgacaag      1560
     tgcaaatcga atcaccgtct actatcaaaa tatcagaggg ctgcgtacaa agattgatga      1620
     cttctttctt gctgcatatg aatcttctta tgatgttatc gtcattactg aaacgtggct      1680
     taatgaccag atcttttcac cgcagctgtt cggtgatcgg ttcaccgtat atcgtacaga      1740
     taggaactca tcaacctctt ctaaaaaaag aggtgggggc gtacttattg ctgtaaccaa      1800
     tcgtcttagc tcggctctac cttcaattgc aatcgatagt actgttgaac atctttgggt      1860
     gaaaattttt gttgctgata atgtcgtcgc tgttggcgct gtttacttgt cgccggaaat      1920
     cgctaatgat gctaccgtaa ttgagaaaca tttggattca gctttgaaca ttaccaactc      1980
     tttaaagcct ggtgattgcc atcttcttct tggtgatttc aatcaaagta gtataatttg      2040
     gactcattca tcttcgggat atttgtatgc tgacccaaga gattcgcatt tctctcctgg      2100
     tagctgctcc cttctggatg gattctccca gttggacatg aaacagttga actacattga      2160
     acaccatcgc ggacgaatcc tggacttgat atttgccaat tcagatattg cttcgctttg      2220
     ttctgtacaa agagcgaatg atcctttgct agaagaagat ccgtatcatc ctgcgttagt      2280
     aacttcgctt acttgcaact gtccggtact attcgatgaa atagagactc ccaatgaatt      2340
     tgacttccag aaggcaaact tttcaacact ggattatgat atttcgcata tcgactggac      2400
     tcctttactt gatgcttctg acgttgacgg ttctgtggat ttcttcacct atacgctgaa      2460
     acagcttttt attaataacg ttcctgtacc tcgaccacga agaaaacctc catggtccaa      2520
     caaccattta cgtaacttaa agcgccatag atccaacgca ctgagaaaat acactaacct      2580
     gaaaacaacg gagtcaaaga gacatttcaa tattgccagc aacaggtaca gatcgtataa      2640
     tagatttctt catgctcggt acaccaatcg aattgaatct aacctgaagc ataacccaaa      2700
     aaaattctgg tcgttcatga atgctaagag aaaggaagct ggcttaccaa catctgtatt      2760
     tttaaacgaa gaagtagcag attcttgtga cgatatgtgc aatctttttg caaaacactt      2820
     ttcagacgtt ttccgtaaag agtctgttga tatacaccgg atcaataacg ctctggctga      2880
     cgttcctcta aatgctctca atatggaata tttccagttt tctgaaaatg aagtcctgaa      2940
     cgcgctgaat aaactcaagt catcttctac agcgggtcct gatggtattc cttcaatcgt      3000
     attaaaaaaa tgtgcctcat cgttgtgcgc tgctctcacc attatctgca acagatcaat      3060
     tgctgaatcc agattcccca ccaaatggaa agaatcaata atgtttccgg tatacaaaaa      3120
     gggagacaag agagacgtaa aaaattacag gggaataact tcattatgcg ctggatccaa      3180
     gctgcttgaa atcctagtca gcgatgtttt gttatcagct tctaagtcgt acatttctcc      3240
     tgaccaacac ggattttttc cgggacgctc cagtgaaaca aatctggtac aatttacgtc      3300
     gttttgcctg agaaacatcg aagaaggcaa tcaagtcgac gcagtctaca cggacctgaa      3360
     atcagctttc gatctggtcg accatttgat tctaatagct aaaatggaaa gattgggagc      3420
     accttcgttc ttcactcgtt ggcttgaatc gtacttgagg aatcggcgat tgtctgttaa      3480
     aatacgtgcg gtacaatctt actatttcac taacaactct ggcgtacccc agggcagtaa      3540
     tttaggtccg ttactgttct cgatattcat caatgatgta tgctgcttgt tacctgctgg      3600
     atttcgttta gtgtatgcgg atgatctaaa gatctatcta gttgtaaaga atcacgagga      3660
     ttgcatcgag ctgcagaggt tggttgatct ctttgaagac tggtgtatca gaaatcatct      3720
     ggttataagt gcccaaaaat gtacagtgat atcattcaac cggaaaaaat gtccaataac      3780
     atgggattat caaatctgtg gtactctgct gtcgcgtgtc accgtcgtca aagaccttgg      3840
     agtccttctt gacacaaatc tgtcttttcg taaccacttt tctaatataa ttgcaagagc      3900
     aaatagaaac ttaggtttca tcatgcgatc aaccggagat ttctctgatc ctttcacttt      3960
     aagatcacta tattattcgc tagttcgctc cacactggaa tatgcatgcg ttgtttggag      4020
     tccttacaca aatgtatgga tattgagaat agaagcaatt caggccaaat tcaccagata      4080
     tgctttgaga ctgctcccct ggaacgatat tgccaacatg ccagcatatg aaatacgatg      4140
     ccgtttgctt ggtatggaat cgcttcgcaa tcgacggaat tctttgagag cattattcgc      4200
     cggtaaactg ttattagcgg ttatagacgc tccaaatatt cttgagcgac tgaacatcaa      4260
     tgcgccttca gtatccctgc gttccagaga tcctctcaga ccggattttc gtagaacgga      4320
     ttacggaatc aacgaaccca tcactgcttt gtgccgggaa ttcaacaaag tctatcatct      4380
     attcgattat tccatctcag cttcagtatt caaaagcaga ctaagacgtt tctctctaca      4440
     tccggaatct gagtgagcaa aattgtgtcg caattaggtg agtcccagtc caataatttt      4500
     aaaagtttta aatgatgctt cttgagtgtt cttttctttt ttgttctcgg tcatctttct      4560
     tcaatacaac gagtgacgaa tacagctgcg tatgaacttg acaaatgatt acttctctca      4620
     tagctctgtt taagtattta ttgcgtagaa atgtcgtttt gtattttata ttttttatgt      4680
     attattttta atctgtatgt aatccattgt attttgtttt gaaaagatat ggggttttta      4740
     cgcccttttg attggactac agttcatgca aaagggcttt tccccatctt aatcctcatt      4800
     aagacatcga tcagttgagg tatgaaaata aataaataaa taaataaata aataaataaa      4860
     taaata                                                                 4866
//
ID   CR1_Ele6    repbase;    DNA;    INV; 5241 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele6.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5241
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5241
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 12
CC   sequences with >98% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           266..1654
FT                 /product="CR1_Ele6_1p"
FT                 /translation="MTSVICSACTQSIGSESDRVYCFGGCDQILHTRCSEL
FT                 SSSAMAAARGNVALKYFCFGCRKQQTCINEINKKCTDLLNRVNVISDLVSK
FT                 HDTAFENLDKQLCEKVEAMLLPRLLSAIHATKSSASDCNTCVVASNDSYAA
FT                 VVSALPTVNVPNTANTNKQIAMNNSNCTPVISDLGGGLLRSGKRRNLDPSR
FT                 KERATMSTESATPCTPRKSATVARIEQTVLLRPKRKQTSEITQKDVHRKLD
FT                 PAEFLVKSAFFKEDGEAVIRCETSENALKFVNAATKMLSEKYDISVQKPLK
FT                 PRIKIFGISEDFTAEEILTKLRKQNNLPESSDVKIVKLQKAKSRKSNPVDA
FT                 VLEVDAKSFDYLIKLERVNIGWNRCRAMEMVNVLRCYNCSAYGHKASSCSN
FT                 SVCCPRCSGDHNADECEAEYEKCANCERLNKDRKSKNDELLDTNHSAWGTD
FT                 CPIYQRRYKLAKERIDYS"
FT   CDS           1664..5149
FT                 /product="CR1_Ele6_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDRSMKRQEQHNACSGNLADSICLAEVTVDTAPKSND
FT                 GHRFQKPSTIRIYHDLPLDDQQGPSQRVKIIDQWNQQTVCPGNLAGSICLA
FT                 EVTVDTAPHSNCGDRFQINSTRPYQCTTIIDEQERHHPVAHQVNNYDEQHS
FT                 ARAGKSMLSICRAEAWQDTTHSSRDFHGFQDTNQQARTDEINNCETNTPDV
FT                 SPAAAHASSSSPSDHSITFYYQNVRGLRTIIEDFYLTVMDAEYDIVVLTET
FT                 WLNSEIQSPQLFGQLYTVYRQDRDSSRCGKSRGGGVLIAVNNRLASSRIDI
FT                 ARIDTIEHLWIKIEVSASTTYVGVVYIPPDVASDSGTISTLVNSLETIVNA
FT                 SGLHDSHMLFGDFNQPSLTWCLSSGHGLIVDHQLSTTTVTSAILLDGLSLL
FT                 NMTQVNPFKNALNRTLDLLLVNDDIAEKCILYDPPEPLTRVDPHHPPFLVV
FT                 YHCQSVTQFRDIVELAAYDFNRTDFEELNQAFQITDWTPLYAAENVNAALD
FT                 YFVSTLTELFRLHVPLRRSPRKPVWSNGTLRRLKRQRAAALRKYSRHRNPF
FT                 TRRSFIVASTKYKCYNRTLYERHARRTQTNLRQNPKRFWSFVNEKRKECGL
FT                 PTSMFYENDSSDSLDGICNLFAKHFSSVFDDTTATTEQLDDAIRYVPENIL
FT                 DFHTCDFSANDILSALRKIKSSTAVGPDGIPTIVLKKCSNALCEPLRYICN
FT                 SSIRQSTFPNRWKDSVMFPVFKKGDKRDVANYRGITSLCAGSKLLETLVSQ
FT                 DLLRASKAYISPDQHGFYPRRSISTNLVQFTSFCITNMGEGAQIDTVYTDL
FT                 KAAFDRVNHQLLLRKIHRLGSPTDFVQWLKSYLVNRQLCVKLGNCQSVAFT
FT                 NHSGVPQGSNLGPLLFSLYFNDVCLVIPAGCRLVYADDLKIFLIVKSADDC
FT                 RQLQRLLDLFSQWCEANFMCISVGKCAVISFSRCRNLLIWPYTIRGNAIER
FT                 VASFRDLGVILDSQLTFREHYSYIIAKANRSLGFIFRLSKEFTDPHCLKAL
FT                 YCSLVRSTLETASTVWSPYHDVWIKRIESIQAKFIRYALRFLPWSNPDELP
FT                 PYENRCRLLELDTLEKRRKMMIAVFAGKIITANIDAPFILSRINLNVVPRP
FT                 LRTRNFLRLDFQRTDYAQHEPIRRMCEVFNCVYDLFDFNMSIDVFRNRLYS
FT                 RNL"
XX
SQ   Sequence 5241 BP; 1536 A; 1128 C; 1110 G; 1467 T; 0 other;
     aaaacatcgt tattgtcagt tgtgcgtgat aatgtttgca tagtttttcg tgattttaaa        60
     gtgtttccgt gagttttata tcgcgtatgt tatagctgtg taaagcgtgg gaagctgttt       120
     tccaatatct actgtcgaaa agatcttcgg ttgagcatac gacgaatata cggcatatct       180
     ttttttgaag aattgagatc taccaccagc aacaaaacat cagtttggtg gtgcggggct       240
     tcgcgagggg cttcatggct ctacaatgac gtcggtgatt tgtagtgcat gtacccagag       300
     tataggctct gagagcgaca gagtatattg tttcggcggt tgtgatcaaa ttctccacac       360
     acgatgctca gagcttagct cgtcggctat ggctgctgct agagggaatg tcgcactgaa       420
     atatttctgc ttcggttgca gaaagcaaca aacatgtatc aacgagatca acaaaaagtg       480
     tactgatttg ttgaatcgag tgaacgtaat aagtgatctt gtatcaaaac atgacactgc       540
     tttcgaaaat ttggataaac agctctgcga gaaggttgaa gcaatgctac tgccgcgttt       600
     gctctctgcg atccatgcaa caaaatcgtc tgcttctgat tgcaacactt gcgttgtagc       660
     atcgaatgat tcatacgctg ccgttgtaag tgcattgcct acagtaaatg taccaaacac       720
     cgctaacacc aacaagcaga tcgcaatgaa taattctaat tgcacaccgg ttatctctga       780
     tctcggcgga ggcctgctta ggtctggaaa acgacgaaat cttgacccat caagaaaaga       840
     gagagcaact atgagcactg agtcagcaac accgtgtacc cctcgaaagt ctgccactgt       900
     cgccagaata gaacagacag tcctgcttag accgaagcgc aaacaaacat cagaaatcac       960
     acagaaagat gttcatcgta agttagaccc agcagaattc ttagtcaaat cagcgttttt      1020
     taaagaagat ggcgaagctg tgattagatg tgaaaccagc gaaaatgctc tcaagtttgt      1080
     taatgctgct accaagatgc tgtccgaaaa atacgatata tccgtacaga aacctctcaa      1140
     gcctcgcatc aaaatttttg gaatatctga agattttact gctgaagaaa tactcaccaa      1200
     gcttcgtaaa cagaacaacc ttcccgaatc ctccgatgtt aagatagtta aactgcagaa      1260
     agccaaatcc agaaaatcaa atcctgtcga tgccgttttg gaggttgatg cgaaatcgtt      1320
     tgattacctg attaaattgg agcgggtcaa cattggatgg aaccgctgtc gagccatgga      1380
     gatggttaat gttcttcggt gttataattg ttcagcttac ggccacaagg cgtcttcatg      1440
     cagtaatagt gtatgctgtc ctagatgttc aggtgaccat aatgctgatg aatgtgaagc      1500
     agaatacgaa aaatgtgcta actgtgagcg gttaaacaag gatcgaaaat caaaaaatga      1560
     tgaactcctc gatactaacc attcggcatg gggaactgac tgtccaatct accaaaggcg      1620
     ctataagttg gccaaagaac gaatcgatta ttcctagcaa ttaatggata gatcaatgaa      1680
     acgacaggag caacataatg cttgttcagg taatttagct gacagtatat gtcttgccga      1740
     agttaccgta gacactgcac ccaaatcaaa cgatggtcac cgttttcaga agccttcgac      1800
     aatacggatc tatcacgatc taccattaga cgaccagcaa gggccatccc aacgtgtaaa      1860
     aatcatcgac caatggaatc agcaaactgt ttgtccaggt aatttagccg gcagtatatg      1920
     tcttgccgaa gttaccgtgg atactgcacc ccattcaaat tgtggcgacc ggtttcagat      1980
     taactcaacg cggccctacc aatgtacgac cataattgac gagcaagagc gacatcatcc      2040
     cgtcgcccac caagtgaata actacgatga gcaacactct gctcgtgcag gtaaatctat      2100
     gcttagtata tgtcgcgccg aagcgtggca agatactaca cacagctcaa gagacttcca      2160
     tggctttcag gatacaaatc aacaagcaag aaccgacgaa atcaacaact gtgaaaccaa      2220
     cacacctgac gtttcacctg ctgccgctca tgcatcgtct tcatcgccat ctgatcattc      2280
     gataactttc tattatcaga acgtcagagg gttgcgtacg atcatcgaag acttttacct      2340
     gaccgtaatg gacgccgagt atgatattgt cgtactgaca gaaacatggt tgaactcgga      2400
     aattcaatcc ccacaattat ttggacagct gtatactgtc taccgacagg atcgcgattc      2460
     atcgcgctgt ggaaagtcta gaggtggtgg cgttcttatt gccgtcaaca acaggcttgc      2520
     ttcttcacgt atcgatatcg ctcgcattga tacaattgag catctatgga tcaaaattga      2580
     agtgtctgct agtacaactt atgtcggagt cgtctatata ccaccagatg ttgcatctga      2640
     ctcaggtact attagcactt tggtcaactc tctcgaaaca attgttaatg catctgggct      2700
     acatgattca catatgctgt ttggtgactt caatcaaccg agcttgacat ggtgcctttc      2760
     ctccggacac ggtttgattg tggatcatca gctttcgact accaccgtga ctagcgcaat      2820
     cctgctagat ggactttcat tgctgaatat gacgcaagtc aaccccttta aaaatgctct      2880
     caacagaact ctggatcttt tgctcgtaaa cgatgatatc gcggaaaagt gtatcctata      2940
     tgatccgcct gaaccattga ctcgtgtgga tccgcaccac ccgccgtttt tagtcgtcta      3000
     tcattgtcaa tctgttacac aattcagaga tatcgttgag cttgctgcgt acgattttaa      3060
     ccgaaccgat tttgaagagc ttaatcaagc atttcagata actgattgga ctcctttgta      3120
     tgcggcagaa aacgttaacg ctgcgttgga ttactttgtc agtacactga ctgaactgtt      3180
     tagactccat gttccactac gccgatcacc tcgtaagccg gtgtggtcaa atggaactct      3240
     tagaagattg aaacgtcaga gggcggcagc tttacgaaag tattcaagac accggaaccc      3300
     atttacgaga agatcattta ttgttgcgag caccaagtat aaatgttaca accgcacatt      3360
     atacgaaaga cacgctagac gtacgcaaac gaaccttagg cagaacccaa aacgattttg      3420
     gtcattcgtg aatgagaaac gtaaggaatg tggattgcca acctccatgt tttacgaaaa      3480
     cgattcttca gactctcttg atggtatctg caatttattt gctaaacact tttcaagtgt      3540
     ttttgacgac accactgcta ctactgaaca acttgatgac gcaatcagat atgtacctga      3600
     aaatatactt gatttccaca cttgcgattt ttcagctaac gatattttat cagcattgcg      3660
     caaaataaag tcctcaactg cggtcggtcc agacggaatt ccgacgattg tgctgaaaaa      3720
     atgttcaaat gcactatgcg aaccactacg ctacatttgc aacagctcta tccggcaatc      3780
     tacgtttccc aaccggtgga aggactctgt gatgtttcct gtgtttaaaa agggcgataa      3840
     gagggacgtg gcgaactata gaggaataac ttcactctgt gctggatcta agttgttgga      3900
     aactctagta agccaagacc ttctgcgcgc atcaaaagct tatatttcgc cggaccagca      3960
     tggtttctat cctagaagat ctatttcaac gaatctagta caatttactt ctttctgtat      4020
     caccaatatg ggagaaggtg ctcaaattga tacggtttat acggatctga aagctgcatt      4080
     tgatcgagtc aaccatcagc tactgctccg aaaaatacat cgactgggat caccgacgga      4140
     ttttgtgcaa tggttgaaat cgtacctcgt gaatcgacag ttgtgtgtga agctgggcaa      4200
     ttgtcagtca gttgcgttca ctaaccattc aggcgttcct caaggaagca accttggacc      4260
     gttactcttc tcattgtatt tcaatgatgt gtgccttgtt atacctgctg gatgccgatt      4320
     agtatatgcg gatgatttga aaatatttct tatcgttaaa tctgcagacg actgtaggca      4380
     actacagaga ctcttagatt tgttttccca gtggtgcgag gccaacttta tgtgcataag      4440
     cgttggaaaa tgtgctgtga tatcattctc acgatgtagg aatcttttga tatggcctta      4500
     cacaatcaga ggaaatgcga ttgaaagagt tgcaagcttt agagacctcg gggtgattct      4560
     tgatagtcag cttacattca gagaacacta ctcgtacatt attgctaaag ccaacaggag      4620
     cttaggattt atctttcgtc tgtctaagga gttcaccgat ccacattgtt taaaggctct      4680
     ctactgttct ttggtacgtt caacacttga aaccgcttca actgtgtgga gtccgtacca      4740
     cgacgtctgg ataaagcgaa tcgagtcaat acaggctaaa tttatccggt acgcattgcg      4800
     gtttcttcca tggagcaacc ctgatgagct tcctccatat gagaaccgat gccgcttgtt      4860
     ggaactggac acacttgaaa aacggagaaa gatgatgata gccgttttcg ctggaaaaat      4920
     cattaccgcg aacattgatg ctccttttat tctatccaga atcaatttga atgtagtacc      4980
     cagaccccta cgtactcgaa atttccttag gctggatttc caacgaactg actacgctca      5040
     gcatgagcca attcgaagaa tgtgcgaagt ttttaactgt gtgtatgacc tgtttgattt      5100
     taatatgagt attgatgtct tccgtaatcg tttatattct agaaatttgt gatgtttaat      5160
     gttaaaatta agaatattca tgtagacatt tttgttcgat gaattatgaa ataaataaat      5220
     aaataaataa ataaataaat a                                                5241
//
ID   CR1_Ele7    repbase;    DNA;    INV; 5156 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5156
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5156
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >96% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           377..1207
FT                 /product="CR1_Ele7_1p"
FT                 /translation="MAKNCGKCSKAINGIDVVICRGYCGGFFHLNECSGVT
FT                 RAMQSYFVSNKKNLFWLCDNCAELFENSHFRMISNQVDEKSPLTSLTTAIS
FT                 ELRTEIKQLHAKPAASPAVTPRWSTIVQKRGTKRPRIIEPNAHAQDSCRVG
FT                 CKKAQENGNVVSVPICKPEAENLFWLYLSKIRPDVTVEAVRDMTKANLGIE
FT                 DDPKVIKLVPKDRDIESLSFVSFKIGLDPSLEDRALNPDNWPEGLLFREFV
FT                 DYGAPKFRPPLKFNTQSPLTLHQTTISPITPVMDLS"
FT   CDS           1102..5049
FT                 /product="CR1_Ele7_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="LRSAKISPPAEVQHAITVDTTSNNNISNHPRHGFELI
FT                 FVIPGRNCLSISEASDSPNTVPLFLPSFISRPGPVFGCGDEVFQAISAGKY
FT                 SCKLNISLPLKCPTSSSLTSMHIYSCSHLRHTNFSSMRNQAVDSIHHQASS
FT                 LIKIVSTFLELPGCTPASLKEALNPLAAVELFLPAINSHPGPVGEYGEGVF
FT                 RTSTAGKYTCNKDISSPVTSIVSSQPISSFMRTTSNFYDSPVPTRTISTFD
FT                 QLPGCMPASLMEAPDPLITVENFPPASCSHSGPVYEFGEGVFQPVLAGKYF
FT                 HESTISLPDENASSSVLIRNDDNILLPRPTAHPVPVGPSPSSVFPIGNSTV
FT                 RVLEGAGHENATETSKILMYYQNLGGMNSSLAEYQLAISDGCYDIYAISET
FT                 WLNGNTSSNQLFDDRYSVFRQDRSPSNSDKSSGGGVLLAVRSKFKSRRLVH
FT                 PNIASVEQLWVAVTTTDATLYLCVIYFPPDRVNDNLLIENHIDSLNWIVSQ
FT                 LGPRDNIIVLGDFNLSAISWQQDSNGSFFPTTSRSSIGSASRALLDSYSTA
FT                 GLKQKVGVVNENNRMLDLCFVSEELQNDCKIMQAPSPLVKTCKHHPALLME
FT                 IAVNPQLCFRNTLEDVRYDFGKADFNGMNNFLTSLDWDDILHNSDANLAAS
FT                 TLSGILLYAIGQFVPIKPSFKPPKPIWSNPELKQLKRAKQAALRRHSKYRT
FT                 DSTREMYVQANTEYKRLNDHLYNAHQDNLQRRLKHNPKSFWNYVNDQRKES
FT                 GLPSTMSNGTFEADSTAGIADLFRTQFSSVFTDELVDPCVVDEATRIVPQL
FT                 PISVQRFYVTDGMVKSAGKKLKSSTGSGPDGIPSLVLKRCVDSLASPLASI
FT                 FNLSLSTGIFPNCWKESYVFPVFKKGCKRLVSNYRGIAALSATSKLFELIV
FT                 LRELVHSYAHYISPQQHGFMAKRSTTTNLASFTSFVIRQIEDGQQVDAIYT
FT                 DLSAAFDKMNHQIALAKFDKLGMDTQILSWLHSYLVDRSMSVKIGDHVSLP
FT                 FSVCSGVPQGSHIGPFLFLLYMNDVNFVLNCLKLSYADDLKLYYTIKKAED
FT                 ALFLQQELEVFAEWCRINRMVLNVTKCSVISFGRKHALHHFGYNLNGVQLQ
FT                 RETTIKDLGILIDSKLTFKDHVAYVVSKASSQLGFLFRFAKKFKDIYCLKA
FT                 LYCSIVRPILEYSSAVWSPYYQNEIQRIEAIQRKFIRFALRHLRWNNPLNL
FT                 PSYRSRCKLINLDLLEDRRNVAKCCFIGDLLQGNIDCPTLLSLVNINIPSR
FT                 NLRSHSFLTISPARTNYGLHEPMRSMCRVFNQCYRVFDFNMSRVANKCNFR
FT                 RILC"
XX
SQ   Sequence 5156 BP; 1363 A; 1242 C; 1075 G; 1476 T; 0 other;
     ttggcaacac tgttgatgtg tatatgcgaa tgtttacggt cttgaaattt ttcgttcgat        60
     atttcgtgaa attgaatgcg taaaatcgcc gtttgactat accgtgctac ctgttcgtcg       120
     tgctagctta gtgcgtgtat tttagtgtcc gtgtgacgca tcgtagtgat attttatcaa       180
     atttatctag tgactcgatt tgtgtattgt tttactcggc aaaagctcac tacccccacg       240
     tcgtcgtttt tttttctgaa gcgacatctg ccggcaaatt ttgtaaacta ccgctgtaaa       300
     gttttgctga tctgagcttt ttagtgccat aaaacttcga aggtgcttct ggtcacatac       360
     gtgtaggcgc ttcaggatgg ctaaaaattg cggaaagtgc tcaaaagcca taaacggcat       420
     cgacgttgta atttgccgtg gctactgtgg tggattcttc cacttgaatg aatgctcggg       480
     ggttactaga gcgatgcagt catatttcgt atcgaataaa aaaaacttgt tctggttgtg       540
     cgataattgt gctgagcttt tcgagaactc ccattttcga atgatttcta atcaagttga       600
     tgaaaaatcg cctcttactt cgcttacaac ggccatctca gaactgcgaa ccgaaattaa       660
     gcaactacat gctaaacccg cagcatctcc agcagttacc ccacgttggt ctactatcgt       720
     tcaaaaaaga ggtactaaac gtcctcgtat aattgaacct aatgcgcatg ctcaggatag       780
     ttgccgtgtc ggttgcaaga aggctcagga aaatggaaat gttgtatcgg taccgatttg       840
     caaacctgaa gctgagaact tgttttggct atatctgtcg aagattcgtc ctgacgtcac       900
     tgtagaagcg gtacgcgaca tgacgaaagc gaaccttggc attgaagacg acccaaaagt       960
     gattaaactc gtcccgaaag atagagatat cgagtcgctt tcgtttgtct cttttaaaat      1020
     cggactagat ccttcacttg aagatagagc gcttaacccc gataattggc ctgaaggatt      1080
     attgtttcga gaatttgttg actacggagc gccaaaattt cgccccccgc tgaagttcaa      1140
     cacgcaatca ccgttgacac tacatcaaac aacaatatct ccaatcaccc ccgtcatgga      1200
     tttgagctga tttttgtcat cccaggacgc aactgcttaa gtatttcgga agcctcggat      1260
     tcccccaaca cagtcccgtt attcctgcct tcgttcatca gccgtcctgg tcctgtgttt      1320
     gggtgcggag atgaggtctt ccaagctatt tcggcaggca agtacagttg caaattgaac      1380
     atttcccttc cgttaaagtg ccctacttcc agcagcttga cgtccatgca catctattcg      1440
     tgctcacatc ttcgacatac gaatttttca agcatgcgta accaagctgt agattcgatt      1500
     catcatcaag catcatcgtt aatcaaaatt gtatcaacgt tcctcgagct accgggatgc      1560
     acgcctgcaa gtctcaagga agcccttaat cctctcgccg cagtcgagct tttcctgcca      1620
     gcgatcaaca gccatcccgg tcctgttggc gagtatggag aaggggtctt ccgaacctca      1680
     accgcaggca agtatacgtg caataaggac atctcttctc cggtaacatc catcgtttct      1740
     agccaaccaa tatcatcgtt catgcgtact acaagcaact tctatgactc accggtgcca      1800
     accaggacta tttcaacatt tgaccaacta ccgggatgca tgcctgcaag tctgatggaa      1860
     gcccctgatc ctctcatcac agtcgagaac ttcccgccag cgtcctgcag tcattccggt      1920
     cctgtgtatg agttcggaga gggggtcttc cagcccgttc tagcaggcaa gtacttccat      1980
     gaatcaacaa tttctctgcc tgatgagaat gcttcttcca gcgtattgat ccgaaatgac      2040
     gacaacatat tgcttccccg accgaccgcc caccctgttc ccgttggacc ttccccctcc      2100
     agcgtgttcc cgattggaaa cagcaccgta cgagtcctcg aaggtgccgg tcatgaaaat      2160
     gcaacagaaa cctcgaaaat tctgatgtac tatcagaacc ttggtggaat gaacagctct      2220
     ctggctgagt atcagttggc cattagcgac gggtgttacg acatttacgc catttctgag      2280
     acttggctta atgggaatac gtcatcaaat cagctgtttg atgaccgcta ctctgttttc      2340
     cgtcaggatc gatcgccttc taacagcgat aagagttctg gcggcggtgt actgcttgct      2400
     gtccgttcga aatttaaatc acgtaggctt gttcatccca atatcgcgtc tgtcgagcaa      2460
     ctttgggtcg cagttaccac tactgatgca acactctatt tgtgcgttat atacttccca      2520
     ccagaccgag taaacgataa cctgttaatc gagaatcata ttgattcgct taactggatt      2580
     gtttcacaat tgggaccaag agacaatata atcgttttag gcgatttcaa cttgagcgca      2640
     atttcgtggc agcaggactc caatggttcc tttttcccga caacctctcg gtcgtccatt      2700
     ggctcggcct ctcgggccct gcttgattca tacagcactg ctggacttaa gcagaaagtc      2760
     ggagtcgtaa acgaaaataa ccgcatgctt gacctgtgct ttgttagcga ggaacttcaa      2820
     aatgactgca aaatcatgca agctccatca ccgctcgtca aaacctgcaa acaccatcca      2880
     gcgttactaa tggaaattgc agtcaatcca caattatgtt tccgcaacac tctggaagac      2940
     gttcgatacg atttcggcaa agctgacttc aatggcatga acaactttct cacaagcttg      3000
     gactgggatg acattctcca taatagcgat gccaatctcg ctgcttcgac gttgtccggt      3060
     atcttgttgt atgccatcgg ccaatttgtc cctatcaagc ctagtttcaa gcctccgaaa      3120
     ccgatatggt caaatcctga acttaagcaa ctaaaaaggg ccaaacaggc agctctccgg      3180
     cgtcacagca aatatcgtac ggactctaca agagaaatgt acgttcaagc taacaccgaa      3240
     tataaacggc tcaacgatca tctgtataat gcccatcagg acaatctgca aagacggctc      3300
     aagcataatc ccaaaagttt ctggaattat gtcaatgatc aacggaagga atccggtttg      3360
     ccatcaacga tgtccaacgg aacttttgaa gcagattcta ccgcgggtat tgccgatttg      3420
     ttccgaactc aatttagtag cgtttttaca gacgaactag ttgacccatg tgtagtagac      3480
     gaagcaacca ggattgtacc tcaacttccg atttccgttc agcggttcta cgtcaccgat      3540
     ggaatggtaa aatcagcagg aaagaaattg aaatcatcca ccggaagtgg gccggatgga      3600
     atcccatcgc ttgttttaaa acgctgcgtg gattcactag cctcaccttt agcatcgata      3660
     tttaacttat cgttatctac tggtattttt ccgaactgct ggaaagaatc gtacgtcttt      3720
     ccagttttta agaaaggatg caagcgattg gtttcaaatt atcgtggcat agctgcactc      3780
     agcgccacct cgaaactgtt tgagttaatc gtattgcgcg agctggttca cagttacgcg      3840
     cattatattt cgccacaaca gcatggattt atggccaaac gatcgactac aactaatttg      3900
     gcgtcattca cctcgttcgt aattcggcag atagaagatg gccaacaggt tgacgctata      3960
     tatactgacc tttccgctgc gtttgacaaa atgaaccatc aaatcgcact ggcaaaattt      4020
     gacaagcttg gaatggatac tcaaatcctt agttggctcc attcttatct ggtcgatcga      4080
     agcatgtccg tcaaaattgg agaccatgta tcgctaccat tttctgtttg ttccggcgtt      4140
     cctcaaggca gccatatcgg cccattttta ttcttgctgt acatgaacga tgttaatttc      4200
     gtgctaaatt gcttaaaact ctcgtatgcc gatgacctga agctttacta tacgatcaag      4260
     aaggccgaag atgccctttt cctacaacaa gaactggaag tttttgctga gtggtgccgc      4320
     attaatcgta tggtactcaa tgtaactaaa tgctcagtaa tctcgttcgg ccgcaaacat      4380
     gcactccatc attttggcta taatttgaat ggtgtgcagc tacagcgcga aacaacaatc      4440
     aaggatttgg gtatcctgat tgattccaaa ttaacattta aagatcatgt cgcatatgtc      4500
     gttagtaaag cttcgtcgca actgggattc ttgttccgat ttgcaaaaaa atttaaagac      4560
     atatattgcc tcaaagctct ttactgctcc attgtgcgac ccattctgga gtattcctct      4620
     gctgtctggt cgccttacta tcagaacgaa attcaacgga tcgaggctat ccagcgcaaa      4680
     ttcatccgct ttgcgttgcg tcatctcaga tggaacaatc cgctcaactt acccagctac      4740
     aggagccgtt gcaagctgat aaatttggat ttactggaag atagacgcaa tgttgcaaag      4800
     tgctgcttta ttggagacct cctgcaaggc aacattgatt gtccaacgct gcttagtctg      4860
     gtgaatatca acatacccag ccgcaaccta cgctcgcact cgtttttgac catttctcca      4920
     gccaggacga actacggatt gcatgaacct atgcgtagca tgtgccgtgt tttcaatcaa      4980
     tgttatcgtg tctttgactt caatatgtcc cgcgtagcaa ataagtgtaa cttccgtaga      5040
     attttgtgtt aatttttttt tctcctgttc gtaattttat tattttactt ttaatgtcgt      5100
     gctaaactag tcactggggt aaatatttta cctgttggca taaataaata aataaa          5156
//
ID   CR1_Ele8    repbase;    DNA;    INV; 4798 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele8.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4798
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4798
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 15
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           2..856
FT                 /product="CR1_Ele8_1p"
FT                 /translation="MSVVCAACIGDATESHVRCRGFCTETFHPRCTGISAD
FT                 TFEEVMKNQQLFWLCPSCTSLMKDIRFRNTARAAHDFGHDQAIHSQSDTLQ
FT                 HLKSEILMELKNEIRTNFATLINSNSFTPKTTQRVKMDALPTTRGRRLFST
FT                 ANLSAPKSKPVLLQGTGSTLSPSTEIQTVPAPQPKFWLYLSRVARDVSVEQ
FT                 ITALACQRLNTADIQVIRLVAKGKDISTLSFVSFKIGMNAELKPKALSTST
FT                 WPKGLVFREFSNDNATGNFWRPRPPFAHNDPLSIPMEADNMRME"
FT   CDS           766..4596
FT                 /product="CR1_Ele8_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="CNWKFLATKTSICTQRSAEYSDGSRQHEDGIEDIQPA
FT                 TVFDIYDATLLPTHHHQPPGRTLTASLMEAPDLLNTVEPLLPAINSRPGPV
FT                 FETVEGVFQNRNSGKYVFDTNCSPPEKHLNSSHYATCTTLSSTLFHQPPGR
FT                 KLASSLMGAPILLNTVEPLQPAFNSRPGPVFETEEGVFQNRNSGKYDFDTN
FT                 CSLPETPLDSSHNASNLTRSSTLQYHPPGRTLASSLMEASNPLNTVEPLQP
FT                 AFNSRPGPVFETGEGVFQNHHKCKYDIHTNSALPVILPASSLSSDGGQDCL
FT                 FQDVARVPTSATTVPFAQHISAGSNRSDVHHSIRGYSSSESHSELRVYYQN
FT                 VRGLRTKIDQFFVAVADAEYDIIVLTETWLDDCIFSPQLFGNAYSVYRTDR
FT                 SPLNSRKTRGGGVLIAVSSCLQSCIDPSSVSSSLEQVWVKVRLRGFAVSIG
FT                 VLYLPPDRKNDLLDIQQHLESVESVMSGLEQHDFAILFGDYNHPEMLWSPS
FT                 EDGGFKIDSGRTSLSASSSALYDGFCFHGLTQVNSIKNAYDRILDLVLVNE
FT                 RTLPVCRLSQAVESLVVPDTAHPALEIGIRITTPVKFEHVLECRRFDFHRA
FT                 DYDVLSNELASIDWQFLDSVRSLNDMVDTFSNEVLRIIERHVPVQRPPLKP
FT                 PWTNPYLRKLKKRRGSALRKYRRSRVPLLKRRFVLASNKYVSYNRLSYVRY
FT                 VDRTQRNLRLYPKRFWSFVKSKRKEDGLPSVMHYEESTVETAAEKCNLFAQ
FT                 HFKAAFSDVDVSSSQVAEALRNTPSESIDFGIFEITEDHVLEALRKLKYSA
FT                 SPGPDGIPSCLLKRCSAALLVPLMKLFNCSLQRGTFPAAWKTSLLSPIFKK
FT                 GDKCDIANYRGITSLTACSKVFEIIVNNALFESCKNYISTAQHGFFPKRSV
FT                 NTNLVEFTSLCIRSMDAGKQVDVIYTDFKSAFDRVNHAILLRKLEKLGMSP
FT                 GLVRWFESYLSGRSMKVRIGAAHSDSFAIPSGVPQGSNLGPLLFSLFINDV
FT                 AFIVPRGERVLYADDVKIFMVVNSVEDCLALQATLNSFECWSRRNKLELCV
FT                 RKCYSITFSRKHNPIHFDYSLSGQTLERKNEVKDLGVTLDNELTFRPHYED
FT                 VLSRANKQLGFIFKIAEGFSDPLCFKSLYCALVRSILEAAVVVWCPYNRVW
FT                 IDRFEAVQRKFVRLALRNLPWRDRIHLPPYEHRCMLLGLDTLESRRVSMQS
FT                 SFIGKIFKGEIDAPAILHELRIYVPERPLRRRNFLNMDARNSRYGQHDPIR
FT                 YMVARFNEVFEQFDFI"
XX
SQ   Sequence 4798 BP; 1284 A; 1096 C; 1030 G; 1387 T; 1 other;
     catgtctgtg gtttgtgccg cctgtatcgg tgatgcgacg gagagtcacg tgcgatgccg        60
     gggattctgc actgaaacgt ttcatccaag atgcaccggt atatctgctg acacttttga       120
     ggaagtgatg aagaatcagc aacttttttg gctctgtcca tcttgcactt cgttgatgaa       180
     agatatccgt tttcggaaca ctgctcgtgc ggcacacgat tttgggcatg atcaagccat       240
     tcattctcaa agtgacacgc tgcaacacct caaatcagaa attttgatgg agctgaaaaa       300
     tgagattcgc acaaattttg ctacattgat caattcaaac tcatttactc cgaaaacaac       360
     tcaacgtgtt aaaatggatg ctttgcctac aacaagagga cgtcgacttt tcagcacggc       420
     aaatttgtct gcgccaaaat caaaaccagt acttttgcaa ggaactggca gtacattgtc       480
     cccatctact gaaatacaaa ctgttccagc accacaaccg aaattttggc tttatctgtc       540
     tcgtgttgca cgggatgttt ccgtagagca gataactgcg cttgcatgtc aacgtctgaa       600
     taccgctgat attcaagtca ttcgcctggt tgctaaagga aaagatatta gcaccctgtc       660
     atttgtatca tttaaaattg gtatgaatgc agaattaaag ccaaaggcgc tttccacctc       720
     cacatggcca aaaggacttg ttttccgaga attttccaat gataatgcaa ctggaaattt       780
     ttggcgacca agacctccat ttgcacacaa cgatccgctg agtattccga tggaagcaga       840
     caacatgagg atggaataga agacattcaa ccagccacag tttttgatat ctacgatgct       900
     actttacttc caacgcacca ccatcagccc ccgggacgca cacttaccgc aagcctcatg       960
     gaagcccctg atctgctcaa cacagtcgag cctctcctgc cagcgatcaa cagccgtccc      1020
     ggtcctgtgt ttgagacagt tgaaggggtc ttccaaaatc ggaactcagg caagtacgtc      1080
     ttcgatacga attgttcgcc gcctgaaaaa catcttaatt ccagccatta cgctacgtgt      1140
     acaacattat cttcaacgct attccatcaa ccaccgggac gcaaacttgc ctcaagcctc      1200
     atgggagccc ctattctact caacacagtc gagcctctcc agccagcgtt caacagccgt      1260
     cccggtcctg tgtttgagac agaagaaggg gtcttccaaa atcggaactc aggcaagtac      1320
     gacttcgata cgaattgttc actgcctgaa acgcctctcg attccagtca taacgccagt      1380
     aacttaacaa gatcttcaac gctgcagtat catccaccag gacgcacact tgcctctagc      1440
     ctgatggaag cctctaatcc gctcaacaca gtcgagcccc tccagccagc gttcaacagc      1500
     cgtcctggtc ctgtgtttga gacaggagag ggggtcttcc aaaatcatca caaatgcaag      1560
     tacgatatac acacgaacag tgcgcttcct gtaatattac ccgcttctag cttgtcgtct      1620
     gacgggggcc aagattgtct cttccaagat gttgctcgtg ttcccacttc tgccactact      1680
     gtgcctttcg ctcagcacat atcggcggga tcaaaccgga gtgatgttca tcattcaatt      1740
     cgtggatact cttcatctga atctcattca gaactgcgag tgtattacca aaatgtcaga      1800
     ggacttcgca ccaaaatcga tcagtttttt gtagcagttg cagatgcaga atatgacata      1860
     attgtactga cggaaacttg gctcgacgat tgtatctttt cacctcagtt atttggtaat      1920
     gcatactcag tctacagaac tgatcgcagc ccacttaaca gcagaaaaac tagaggtggt      1980
     ggggtgttaa tagccgtttc gtcctgcttg caatcctgta ttgatccatc ttcagtgagc      2040
     agttctttgg agcaagtctg ggtgaaggtc cgtttacgag gttttgctgt tagtattgga      2100
     gtactttatt taccacccga ccgcaaaaat gatctgctag acattcagca gcatttggaa      2160
     tctgttgaat ctgttatgtc aggtttggaa caacatgatt ttgccattct tttcggcgac      2220
     tacaatcatc ctgagatgct gtggtctcct tctgaggatg gaggctttaa aattgactcc      2280
     ggacgcacaa gcctcagtgc ctctagtagt gcgctgtatg atggtttctg cttccatggc      2340
     ctaacacaag tcaattcgat aaaaaacgcg tacgacagga tcctagattt agtgctggtg      2400
     aatgaaagaa cgctacctgt atgtcgtctc tctcaagcag ttgaatcgct cgtggtaccc      2460
     gacacagctc acccagcctt agaaatcggc attaggataa ctacgccggt gaaatttgag      2520
     cacgttctcg aatgtagaag gtttgatttt catcgagcag attatgatgt gctctccaat      2580
     gagcttgcat caatcgattg gcaattcctc gactctgttc gcagcttaaa tgacatggtc      2640
     gacacattta gcaatgaagt tctgcgaatc atcgaacgac atgttccggt tcagcgccct      2700
     cctttaaaac caccttggac taatccttac cttcgtaaac tgaaaaaacg taggggatca      2760
     gcactgcgga aatacagacg cagtcgcgta ccacttttaa aacgacgctt cgtgctggcc      2820
     agcaacaagt atgttagcta caatcgtctt tcatatgttc gmtatgttga tcgaactcaa      2880
     cggaatcttc gtctttatcc aaaacgtttt tggtcttttg tgaagtctaa gcgaaaggaa      2940
     gatggactac cgtctgtaat gcattacgaa gaatctactg tggagaccgc tgctgaaaag      3000
     tgcaaccttt ttgcacagca tttcaaggct gctttttctg acgtagatgt ctcgtcatct      3060
     caagtagccg aggccttacg caatactccg tcggagagca tcgatttcgg tatctttgaa      3120
     ataactgaag atcacgttct tgaagcttta cgaaagctta agtactcagc atcacccgga      3180
     ccagatggaa tcccgtcatg tttgctgaaa aggtgttcag ctgccctttt agtgccatta      3240
     atgaaattgt tcaattgctc gttacaacga ggaacctttc ccgctgcgtg gaagacttct      3300
     ttgctttctc cgatttttaa gaaaggcgac aaatgtgaca ttgccaacta cagaggaatt      3360
     acatctttaa cagcatgttc aaaagttttt gaaataatag tgaataacgc tcttttcgaa      3420
     tcatgcaaga actacatttc tactgctcaa cacggattct ttccaaaacg gtcagtgaat      3480
     actaacctag tcgagtttac ctcgctgtgc attcggtcaa tggacgcagg aaagcaggtc      3540
     gatgtcatct atacggattt caaatcagca tttgatcgtg tgaatcatgc tattctcctt      3600
     cgaaagcttg agaagttggg gatgtcgcca ggcctcgtta gatggttcga atcgtatctt      3660
     tccggccgat ctatgaaagt acggattggg gcagctcatt cggattcttt tgctattcct      3720
     tcaggagtgc cacaaggaag taatctagga cctctcttgt tctctctgtt tatcaacgat      3780
     gttgccttca ttgtgcctcg cggagaacga gtcctttatg cagatgacgt gaaaattttc      3840
     atggtggtca atagcgttga agattgtttg gcattacagg cgaccttaaa ttctttcgaa      3900
     tgctggagca ggcgtaataa acttgagctc tgcgtaagga aatgctactc aatcactttt      3960
     agcagaaaac ataatccaat ccatttcgat tattcgttgt ccggtcaaac attggaacgt      4020
     aaaaacgaag ttaaggatct tggagtgaca ctggataatg agctgacatt caggccgcac      4080
     tatgaggacg ttctttctag agcaaacaag cagcttggtt tcatatttaa gattgcagaa      4140
     ggtttctcgg atcctttgtg cttcaaatca ttatactgtg ccttggttcg ctctattttg      4200
     gaagctgctg ttgtagtttg gtgcccgtac aatagagttt ggatcgatcg tttcgaggct      4260
     gtgcaacgga agttcgtgcg actggctctc aggaatcttc cgtggcgtga tagaattcat      4320
     cttcctccgt atgagcaccg atgtatgctg cttgggttgg atactttgga aagtaggaga      4380
     gtttcaatgc aatctagttt cataggaaag atcttcaaag gcgaaattga tgctccagct      4440
     atactccacg agttgcgtat ctatgtccca gaacgccctt tgagacgacg caactttctc      4500
     aatatggatg cgcgcaatag ccgatacggg caacatgatc ctattagata catggttgct      4560
     cgttttaatg aagttttcga acagtttgat tttatttaat gtatttatct tgtaatatta      4620
     ggtttttaac actttgtttg ttagttttag attttaagtg tcttttgttg taatttgttg      4680
     tgttacttgt ttcaaaaaga tgcgggtttt atgcctattt caggctttcc cagccatact      4740
     tcattaagac ctaggtcaga tgaagaaata catataaata aataaataaa taaataaa        4798
//
ID   CR1_Ele9    repbase;    DNA;    INV; 4924 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A CR1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1_Ele9.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4924
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4924
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >99% identity, and ~99% identical to the original
CC   sequence in [1]. This family is closely related to CR1-1_BM.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1824
FT                 /product="CR1_Ele9_1p"
FT                 /translation="MKCGVVNCTQNDNRFLWRCQGNCKRTYHAACIGVQRH
FT                 HEEILRTFMLPLCQDCQDKFIPEFNLNELSTSFKHISESIGHSLTANHKLA
FT                 TNFNSLSAMHDETLAHFEQMLSEIKRSISIVNSSSKTSAAEIKHQLSALLD
FT                 TPPTDPCAAVEKAVKSAATAAVEEIIISTSAAAHSIDQLPQLINDLVDKNA
FT                 ILASDVKSHIEEMAKTFSATHTHTCEPIMANNLANELGDIIKPSPSWRMLG
FT                 NKKVWKHDWTEYDAKQRSRRTQEKKEKKARRRRKQRQEIYARNQNHRNINN
FT                 NNNNNNSNNYNYNYNNNNNGNNKNNNNRSISNINNNSNSRNNSTISNINDN
FT                 NHNIDKSTTNNTEITSTHMNSVRGNSSLPLDKELLAAARVQFSQPPKKDNG
FT                 PKFINFQKGETINPYRPEKPARLENPPLFDPMRPPIVRLTEESAAGDQRFL
FT                 KARLRDPKIMDIVRTYLSFLHDQTPSTCIRGLTKTSASLTLAAEGLPADTN
FT                 LLREIFLDVHEELGISRSDALEDLKSYRAFLSSERIQRLQLTRESANKFYS
FT                 AGLQNFRK"
FT   CDS           1791..4844
FT                 /product="CR1_Ele9_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ILLSRLTKFSKIKTHSLEADITDVSTTSTLHTLPDAH
FT                 SNVSITNNPKISLSSQQNATEILVYCQNFNRMKSSAKMKEIHQKLLSSSFN
FT                 IILGTETSWDESVRSEEIFGNNFNVFRHDRNLQHCNKKSGGGVLIAINADF
FT                 TSEEIETFKHKEFENVWAKALINGETHIFSSVYFPPEHANKHSFELFFKIV
FT                 ETIISNMEPEVKLHIYGDFNQRNADFITDNENESLLLPVVGEDSTLQFLFD
FT                 KTSYFGLNQINHVKNQQNSYLDLLFTNCTEDFCVYTSLSPLWKNEVFHTAI
FT                 EYSIFIHKTSLPSDWEYEEVPEYNKANYXEAKRRLCTINWQHIISIDGNVD
FT                 TEVDKFHSIIQQIINETVPTRRKRRIQNNKLPVWFSPHLKNLKNKKQKAHK
FT                 LYKKENTATNLQNYHDTCNQLNSAINSAHEEYNRKVESEVKSCPKNFFNYV
FT                 NTQLKSSNFPSRMHFDGNVGENSSDICNLFADFFQEVYTTYSEEDRDRNFF
FT                 SFFPEISNSISIEKLSQQEILSALKNLDATKGAGPDGIAPVFFKNLSEELT
FT                 LPLERLFNMSLNNGKFPVAWKSSYLVPVFKSGTKSDIRNYRGIAIISCIPK
FT                 LFESLVNDKIFQQVKNQITCRQHGFFKGRSTSSNLLEFVSFILNAMDNGKH
FT                 VEALYTDFSKAFDRIDIPLLIFKLQKIGMEPGLLSWIQSYLSHRKQIVRFQ
FT                 NKLSAPISVTSGVPQGSHLGPLLFILYVNDISFLLRKIKFLIYADDMKLFM
FT                 EVSNSSEAEEFQNDINLFFTWCQKSLLQLNIKKCNSIAFSRKYVTPPIEVF
FT                 LGNQVVQKCKIVRDLGVILDSKLTFVEHYNSIINKANSMLGFIKRFSNNFQ
FT                 DPYTIKLLYTTYVRPILEYCHLVWNPYHVVHEERIESVQKQFLLYALRKLN
FT                 WTVLPLPSYEARCMLINLETLKQRREFAMILFINNIISNRVDSAALLSQLN
FT                 FYTPSRHLRTRKLFSEKSCRTHYAQNGPINRMMRQYNVHCEFIGITMSKEQ
FT                 LKTQLKNNRSNP"
XX
SQ   Sequence 4924 BP; 1745 A; 1087 C; 807 G; 1284 T; 1 other;
     tgcattacga acctccgttg tgttcggacg cgctgtctcg gcgctcttgt atatattttt        60
     accttttaac ttttttttaa taaacatttt tatttgaccc gcgcgcgcac ctcgcgtaag       120
     cttttaattt acattttttt ttatcgacgc gtgtgcaaaa tgaagtgtgg tgttgtgaac       180
     tgtacacaaa acgacaatcg ttttctttgg cgctgccaag gcaactgtaa gcggacctat       240
     cacgctgcct gcattggcgt acaacgacac cacgaagaaa ttttacgtac cttcatgctt       300
     cctttgtgcc aagactgtca ggataaattc attcctgaat ttaatcttaa tgaactgtcc       360
     acatctttca aacatatctc ggaaagtatt ggacattcat tgacagcaaa ccacaaatta       420
     gcaactaatt ttaatagcct tagtgctatg cacgacgaaa cgctggcaca ttttgaacaa       480
     atgctgagcg aaattaaacg gagcatttcc atcgtcaaca gtagcagcaa gacaagtgcc       540
     gcagaaataa aacatcaact atcggcactt cttgacacac ctccaacaga cccatgcgct       600
     gctgtagaaa aagcggtcaa atcagcagca accgcagcag tagaagaaat aataatatca       660
     acatcagctg cagcgcactc cattgaccaa ctgccccaat taattaatga cttggtcgac       720
     aaaaatgcca ttctagcttc cgatgtaaaa tcgcacatcg aagaaatggc aaaaacattt       780
     tcggcgacac atacacatac atgtgaacca ataatggcaa acaacttagc caatgaattg       840
     ggggacatca tcaaaccctc ccccagctgg cgcatgctag gcaataaaaa agtatggaag       900
     catgactgga ctgaatatga cgctaaacag cgttcacgtc gtacacaaga aaagaaggaa       960
     aagaaggcca gacgaaggag gaaacaacgc caggaaattt acgccaggaa tcaaaaccac      1020
     cgaaacatca acaacaacaa taacaacaac aacagcaaca actacaacta caactacaac      1080
     aacaacaaca atggcaataa caaaaacaac aacaacagaa gcatcagtaa catcaacaac      1140
     aatagcaata gcagaaataa cagtaccatc agcaacatca acgacaacaa ccacaatatc      1200
     gacaaaagta ctactaacaa cacagaaatc acttcaacgc acatgaattc tgtgcgtgga      1260
     aattcgtcat taccattgga caaagaactt ttggcagcgg cacgtgtaca attttctcag      1320
     ccgccaaaga aggacaatgg accgaaattc ataaatttcc aaaaagggga aaccatcaac      1380
     ccttatcgcc ctgaaaaacc tgccaggctt gaaaaccctc cactttttga ccccatgcgt      1440
     ccacctatag tcagactcac ggaagaatct gcagccgggg accaacgctt cctgaaagca      1500
     cgtctacggg acccgaaaat catggacata gtgcggacct atctttcatt cttgcatgac      1560
     cagacccctt caacatgtat tcgtggactt accaaaacta gcgcatcttt gacattagca      1620
     gcagaaggac taccagcgga cactaatctt ttgcgcgaaa ttttcttgga cgttcacgaa      1680
     gaactcggaa tttcgcgaag cgacgcctta gaagacttga agtcgtaccg ggcattctta      1740
     tccagcgagc gcatacagcg actgcagctt accagggaga gtgctaataa attttactca      1800
     gccggcttac aaaattttcg aaaataaaga cgcattcctt ggaagcagac atcactgacg      1860
     tctccacaac atccacccta cacacgctac ctgacgcaca tagtaatgta agtattacaa      1920
     ataatccaaa aatttctttg tcttctcaac agaatgcgac tgaaattctg gtatattgcc      1980
     aaaatttcaa tcgcatgaaa agctcagcca aaatgaagga aattcatcaa aaacttttat      2040
     cttcttcttt caatataatt cttggaaccg aaactagctg ggacgaaagc gtaagaagcg      2100
     aagaaatttt tggaaacaat tttaatgtat ttcggcacga ccgaaatttg caacactgta      2160
     ataagaagtc cggtggtgga gttctcatag ccattaatgc agactttact tctgaagaaa      2220
     ttgaaacttt caaacacaaa gaattcgaaa atgtttgggc taaagctcta attaatggag      2280
     aaacgcatat tttttcatcc gtgtattttc cacctgaaca cgctaacaaa cattcttttg      2340
     aattattttt caaaattgtc gaaactatta tttcaaatat ggaacctgaa gtaaaactgc      2400
     atatttatgg cgacttcaac caacgcaatg ccgacttcat tacagacaat gaaaatgaat      2460
     cacttttact cccagtcgta ggcgaagaca gtactttaca atttttattc gacaaaacat      2520
     catattttgg cctaaatcaa attaatcacg taaaaaacca gcaaaattct tacttggacc      2580
     tcttatttac aaattgcact gaagatttct gtgtgtatac atcattatca cctctatgga      2640
     aaaatgaagt atttcacaca gcaattgaat attcaatctt catacataaa acttctctcc      2700
     ccagcgactg ggagtacgag gaagtgccgg aatacaataa agcaaattac aamgaagcca      2760
     aacgtagact atgtacaatt aattggcaac atatcataag tattgatgga aatgtcgaca      2820
     ccgaagtaga caagttccat tcaattattc aacaaataat taatgaaact gtgccaacaa      2880
     gaagaaaaag acgaatacaa aataacaaat taccggtgtg gtttagccca catctgaaaa      2940
     acctaaagaa caagaaacag aaagcgcata aattatacaa aaaagaaaat actgccacca      3000
     acttacaaaa ttatcatgac acatgtaacc aactcaactc agccattaac tccgcacatg      3060
     aagaatataa tcgtaaggtc gaatccgaag tcaaatcatg tcctaaaaac ttttttaatt      3120
     atgtaaacac acaattaaaa agtagcaatt tcccttcgcg aatgcatttt gacggaaacg      3180
     taggtgaaaa ctcttccgat atctgcaacc tctttgcaga tttctttcaa gaagtgtata      3240
     ccacctactc tgaagaagac cgcgaccgca atttcttttc ttttttccca gaaatttcta      3300
     atagtatatc tattgaaaaa ctatcacaac aagaaatctt atcggcacta aaaaacctgg      3360
     acgcaactaa gggagcagga ccggatggca ttgcacccgt gttcttcaaa aatctctcag      3420
     aagaacttac ccttccctta gaacgccttt tcaacatgtc tctaaataat ggaaaattcc      3480
     cagtagcttg gaaatcctca tatttggtgc ctgttttcaa atcaggtaca aaatctgaca      3540
     taaggaacta tcgcggaatt gccattatct catgtattcc caaactcttc gaatctctcg      3600
     taaacgacaa aattttccag caagtaaaaa accaaattac ttgtaggcag catggctttt      3660
     ttaaaggccg ctcaacatct tccaatctgc tagaatttgt atcttttatt ctcaacgcaa      3720
     tggacaatgg caagcacgta gaagccctct acactgactt cagtaaggca tttgaccgaa      3780
     tcgacatacc attattaatc ttcaaattgc agaaaatagg aatggagcca ggactcttga      3840
     gttggatcca gtcatatcta tcacatagga aacaaattgt gcgctttcaa aataaattat      3900
     cagcacccat ttctgtaacc tctggagtac ctcaaggttc tcatttaggc ccacttcttt      3960
     ttattttgta tgtaaacgac atttcctttt tacttagaaa aataaaattt cttatatatg      4020
     cagacgacat gaagctcttc atggaagtaa gtaattctag cgaagcagaa gaattccaga      4080
     atgacattaa cttattcttc acttggtgcc aaaaaagttt acttcagctc aatatcaaaa      4140
     aatgtaattc aatagcattt agtcgaaaat atgtaacacc accaattgaa gtatttttag      4200
     gaaatcaagt agtgcagaag tgtaaaattg taagggattt gggcgtaatc ctagactcta      4260
     aactcacttt tgtagaacat tataattcca taataaacaa agcaaacagc atgcttggct      4320
     tcattaagag gttcagcaac aattttcaag acccatatac tattaaacta ttgtatacta      4380
     catatgtaag accaattctg gaatactgtc acctagtatg gaacccgtat catgtcgtac      4440
     acgaagaacg catagaatca gtacagaagc aattcctttt atacgccctt cggaaattga      4500
     attggactgt gctgccactt ccgtcgtatg aagcacgctg catgctcatc aacttggaaa      4560
     cacttaagca acgccgggaa ttcgcaatga ttctctttat aaacaacatt atttcgaacc      4620
     gtgtagactc cgctgcactt ctttctcaac taaacttcta cacaccctct cggcatttaa      4680
     gaacaagaaa attattttca gaaaaatcat gcagaacgca ttatgctcaa aacggaccaa      4740
     taaaccgtat gatgcgtcag tataatgtac attgcgaatt cattggcatt actatgtcca      4800
     aagagcagct taaaacacaa ctaaagaaca atagaagtaa tccatagcat gtaagaaagt      4860
     attgtaatta ttgtatgtag tctacctatg cttgacgaaa taaataaata aataaataaa      4920
     taaa                                                                   4924
//
ID   Crack-10_AAe repbase;    DNA;    INV; 4616 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4616
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1226-1226 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           730..1491
FT                 /product="Crack-10_AAe_1p"
FT                 /translation="MTHISLKELPDLLSKALTEHANRLLANIEHSQQFLSD
FT                 KLDDFGDQILKLKAEISKLKNENDCLRKDLALISSKTDTVSNVVEKQETAL
FT                 DLRRRLELSSNAILLGIPRVPNENTRTLVTMTCNTLGIDEANSIVSCTRLP
FT                 SSKTEISPIRIVFKDVHAKERLMEKKQKFGPLTASMISGIRWPNGWTNKIF
FT                 IRDDLSPLAMEIFRELKTLQPLHKFRYVWPGRDGVIFVKFHEDSYPVKVRS
FT                 RDDLRKLILSAQN"
FT   CDS           1540..4431
FT                 /product="Crack-10_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNSNNLAKNHRTNSLDAIFTPATLNGLNTLQINIRGI
FT                 NRMEKLDSLCLFLQNLPVVIDILIIGETWIRSDRSKYYNIPGFKSTFSSRS
FT                 SSSGGLAIFIRDGISFEVISNMEDNGLHHIEIVILETGIKVHGIYRPPGFE
FT                 TDRFISILERVISSADLDTPCLIFGDMNLAINNTESRGVQKYLQLLASYNM
FT                 VVTNTHSTRPISNNVLDHVVCPSDVSGRITNFTMDCELSDHCYILTHFETA
FT                 TMKVSQKLTKSIVHHQQIDLHFRMFLEATDFSCLQPNERLLAVTDRFMQLK
FT                 QSFTTQISVNVKVKRNVCPWLNLDIWKLGRISNNLFQRWKRNRQDEHVKDL
FT                 LTHANKKLADAKRRAKSAYYQQLFSTNNPKQLWNRINNMLGNQLDSTKQQT
FT                 LIVDDTEITKPEDLGDAFNNFFSSIGDSTASCLNSDGNINKFNTMDTCGQS
FT                 IFLRPASPTEVSNIIRVLNSSKATGVDGFPVSALKKYSDVLSPIICTSFND
FT                 SLTSGIYPDCLKKALVYPIFKGGDPKNPSNYRPISVLPAINKVFEKLLSAR
FT                 LQSFSDSTALLNPKQFGFRHGSSTEVAVLELVDDIANCMDKKSAAGVVFLD
FT                 LSKAFDTINHSILLKKLDAYGIRGVANDLLRSYLLNRQQKVRVSGISSEYR
FT                 SSNCGVPQGSNLGPLLFLIYINDIAKLQIKGHPRLFADDTAIMYKSNSVTE
FT                 LFADMSNDLRLVTAYLENNLLSLNLHKTKLMVFGARENHAAPHPTLTVNGV
FT                 TIEEVSYYKYLGIYIDNKLRWDCHIRNTVDNCASLCGILRKLSKYVPQHVL
FT                 LKIYFAFIHSRYQYGITTWGTTFNTYLKDIQVQQNRCVKAIFKLDYLHPTN
FT                 QLYSTTEHNILPIQGLYIMRTATIMFKILNNLNLHHNWNFNAAAHHHQTRY
FT                 AHLLQRTGFRTEVGRRRFQNLGPATYNRLPEEIKSARTIQQFRRNLILYIK
FT                 SNIDQFIVR"
XX
SQ   Sequence 4616 BP; 1434 A; 989 C; 864 G; 1327 T; 2 other;
     actgctgtga aatagctgtt gaactttgtg ctctgctttt tctgcaaaaa ttaaaccgaa        60
     accaaaacag aattgctgac tgctgtatat taaagaaaac tcgctgttgc tgctttgtca       120
     ttggacatat atgtacctcg atgtaagtag aaacatctga gaaaatcagg cttgaaaatt       180
     gctgtgatac tgctgctgta aattctgcct gccatatcta ttgctgctgt tgctgacccg       240
     ctgcctcaaa cctccaccct tgcgccattg tacaaacaag cttcatcaaa tctgctgttg       300
     tattctaccg atcatatgct gctgttgctg taaaagtgct tctaatgtgc tgcaattaat       360
     ctccaccatt aatcgctcat atctacttgt gactgtatcc aatctgcgag aataaaggat       420
     cttttctgct ggttgttttc atttcgccca tcaccgccac ccgcccgcca tcgcctataa       480
     tcaagtcctg ctgtcaatcc ttttccctat cggaggatct gctgtatgaa agatcaatac       540
     caaacatcca tcaacacatc acgaccacca ccaccaggat aatccagcgc tgctcgttgc       600
     tattggcgtt ccggctcagt gtgagtaata attagctata ttgctgatag ggcacgtcta       660
     agccattcga tacaaccgca cgcacgtata catttagtat agcgccatct tttggccgac       720
     actaaaacta tgactcatat cagtctgaaa gagttgccag acttgctttc gaaagctcta       780
     accgaacatg ctaatcgtct gctagcgaat atcgagcaca gccaacaatt tttgtccgat       840
     aagttggacg atttcggcga tcagattttg aagcttaagg cagaaattag caagctaaaa       900
     aatgaaaatg attgtttgag gaaagactta gcgttaattt cgtcaaaaac agatacagtt       960
     tcgaatgtgg tcgaaaaaca ggaaactgca ttagacctcc ggcgaagatt agaattgtcg      1020
     tcaaacgcca ttctgttagg gatacctcgg gtgccaaacg agaataccag aactcttgtt      1080
     accatgacat gcaatactct tggtatcgat gaggccaatt ctattgtttc gtgtactaga      1140
     ttaccttcat ctaaaactga gatcagccca atcagaatcg tattcaaaga cgtgcatgct      1200
     aaggaacgtc taatggaaaa gaagcaaaaa tttggtcccc tgactgcatc gatgatatcc      1260
     ggaattcggt ggcccaatgg ttggaccaat aagattttca tcagagacga tctttcccca      1320
     ctcgcgatgg aaatctttcg tgagctcaaa acgctacaac ctttgcataa attccgttac      1380
     gtctggcctg gacgtgatgg cgtaatattc gtgaagtttc atgaggattc ctacccggtt      1440
     aaagttcgat cacgtgatga cctgaggaaa cttattttaa gtgcccaaaa ttgaagctgc      1500
     tgataacact aacagtttca tataaaaaat attcctacaa tgaattcgaa caaccttgca      1560
     aaaaatcatc gcactaattc tttggatgca atttttacac ctgccactct caatggcctc      1620
     aatacgttgc aaattaacat tcgcggaatc aaccgaatgg aaaagctgga ttctctttgc      1680
     ctttttctgc aaaatcttcc cgttgtcatt gatatcctta taattggaga gacctggata      1740
     agaagtgaca gaagcaagta ctataacatt cctggattta agagtacttt ttcttctcga      1800
     agcagctcat ctggagggct tgctatcttc atcagagatg gaatcagctt cgaagtgata      1860
     tccaacatgg aggataacgg attgcatcat attgaaattg ttattttgga gactggcatc      1920
     aaggttcatg gaatctaccg tcctcctgga tttgaaaccg atagatttat ctctattctt      1980
     gaacgtgtga tatcgtctgc agacctggat actccttgtt tgatattcgg agatatgaat      2040
     cttgccataa ataacacaga atcacgtgga gttcaaaaat atttgcagct attggcttct      2100
     tacaacatgg ttgtaactaa tactcacagt actcgcccaa taagtaacaa cgtgcttgat      2160
     catgtggttt gtccttcwga tgtatctgga cgaataacaa atttcactat ggattgcgaa      2220
     ctcagtgatc attgttatat tttgactcat tttgaaactg caactatgaa agtcagtcaa      2280
     aaacttacca agtctatcgt acaccaccag caaatagacc tgcacttccg catgtttctg      2340
     gaagccactg acttctcatg cttgcaacct aacgaacgac tgttggcagt tacggatcgt      2400
     ttcatgcagc tgaagcaatc gtttactacg cagatatcgg taaatgtcaa agtcaagagg      2460
     aatgtatgcc cttggcttaa tctagacatt tggaagttgg gtagaatctc caacaacctt      2520
     tttcaaaggt ggaagagaaa tcgccaagat gagcacgtca aagatctgtt aactcatgca      2580
     aataaaaaac tggcagatgc taaacgtcgt gccaaatctg catactacca acaacttttt      2640
     tcgaccaaca atcccaagca gttatggaac cggattaaca atatgctagg aaatcaactt      2700
     gattcaacta agcaacaaac gcttatagtg gatgatactg agattactaa gcccgaagat      2760
     cttggagatg cgttcaacaa cttcttttca tctattggag atagtactgc tagctgcctt      2820
     aattcagacg gtaatattaa caaattcaat actatggaca cttgcggtca atctatattc      2880
     ctgcgacctg cctcaccaac cgaagtatcc aacatcatac gagtgttaaa cagctctaaa      2940
     gcaactggag ttgatggatt cccagtatca gcgcttaaga aatacagtga tgtcctctcc      3000
     ccaattatat gcaccagctt caacgatagc cttacttctg gaatctatcc cgactgtttg      3060
     aaaaaggcgc tcgtttaccc tattttcaaa ggtggtgacc ctaaaaatcc cagcaactat      3120
     cgacctatat ctgttcttcc tgctatcaac aaagtattcg agaagcttct gtctgcgcgt      3180
     ctccaaagct tttcggatag tactgctcta ctcaatccca aacaatttgg attcagacat      3240
     ggatcttcaa cagaagtagc tgttttggag ttagtcgacg atattgcgaa ttgtatggat      3300
     aaaaaatcgg cagctggggt agtgttcttg gatctctcaa aggccttcga tacgattaac      3360
     cattcgattc ttctaaaaaa actagacgca tatggcatac gtggcgttgc taatgatctg      3420
     ttgcgaagtt atctgctgaa tcgtcaacaa aaagtaagag tctccgggat tagtagtgag      3480
     taccgtagca gtaactgtgg agtgcctcag ggcagcaatc ttggacctct gctgtttctt      3540
     atctacatca acgatattgc aaagctccaa attaaaggac accctagact gttcgccgat      3600
     gatactgcaa tcatgtataa gagcaactcc gtaacagaac tatttgcaga catgtcaaac      3660
     gatttgcgtc tggtaacggc gtatctagag aacaatttac tgtcattaaa tctgcacaaa      3720
     acaaaattaa tggtctttgg agctagagag aaccatgctg cacctcatcc aacattgaca      3780
     gtaaatggcg taacgattga agaagtttcg tattataaat acttgggcat ctacattgac      3840
     aacaagctac gttgggattg ccatatacga aatactgttg ataactgcgc atcgttgtgt      3900
     ggaattctaa gaaagctgtc gaaatatgtg ccacaacatg ttctactaaa aatatatttc      3960
     gcttttatcc atagtcggta tcaatatggt ataacgactt ggggtacaac cttcaacaca      4020
     taccttaaag acatccaagt tcagcaaaac agatgtgtta aagcaatatt caaattggat      4080
     tacctgcacc caacaaatca gctttacagc accactgaac ataatattct gccaatacaa      4140
     ggactgtaca tcatgcgaac agccacgata atgtttaaaa tcctaaacaa tctcaatctg      4200
     catcataact ggaactttaa tgctgctgca catcaccatc agactcgata tgctcatttg      4260
     ctgcagagaa ctggctttag aacggaagtt ggaagaagaa gatttcaaaa tttagggccg      4320
     gcaacataca atcgattacc agaagaaatc aagagtgctc gaacgattca acaattcagg      4380
     cgtaacctta tactttatat aaaatctaat attgatcaat tcattgttcg atagtattta      4440
     tgtagaactt tctctaaact gaattcaata atgtaactcg actaatttaa atagctattt      4500
     caataagctc taacgtccct tttaaggaac actagttcga tagggattgt gagtattatt      4560
     cttattgctt tgtagmatga tcataaataa taaataaata atataataaa aaaaaa          4616
//
ID   Crack-10_CQ repbase;    DNA;    INV; 1468 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1468
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 41-41 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1153
FT                 /product="Crack-10_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="LDNRDDVLGLFLDLSKAFDTVDRKILIDKLRYAGVRG
FT                 IALDLFTSYLSNRAQFVCIDGIHSLLTLVNVGVPQGSVLGPLFFIIYLNDF
FT                 SLLPLKGDLRLFADDSSLFYNNKSTNMNDLNLRDDLTIVIEYFRLNKLTLN
FT                 INKTNIINIKNSSRSIPNSLSLTTSKFPDLEVVSDTKYLGIILDNRLNWSA
FT                 HINALILKLHKITGIIFKIKHKLPQKVLFLIYHSLFHSILSYVTAVWGNAC
FT                 GLLINKLQVAQNRILKIILNLPIRSHTVDLYVKNNILPVRGIYVFQVCCFI
FT                 YLCLNNKTHSNTKFVRSNHQYGTRYHDLLNRPNVTTVPGERSINFNGAQLY
FT                 NYFNNRFGKSSSLNIFKNQLKQCLSRPDIIEKLLKSVNIFA"
XX
SQ   Sequence 1468 BP; 459 A; 260 C; 206 G; 541 T; 2 other;
     cttagataat cgcgatgacg ttcttggttt atttttagat ttatcgaaag catttgatac        60
     agttgatcga aaaatattaa tagataaact tagatatgct ggcgttcgtg gtattgcttt       120
     ggatttattt actagttatc tttctaatcg tgctcagttt gtttgtattg atggaataca       180
     tagcttgcta actttagtaa acgtgggagt acctcaaggc tctgtgcttg gtccattgtt       240
     ttttattata tacttaaatg atttttcgtt acttcctctt aaaggggact tgaggctctt       300
     tgcagatgat tcttctctct tttataacaa caagtctact aacatgaatg atcttaattt       360
     gcgagacgat ctaacaatag taatcgaata ctttagattg aataaattaa cattgaatat       420
     taacaaaacg aacattataa atataaaaaa ttcttcacgt tcaataccca atagtttatc       480
     tctcaccaca agtaaatttc cagatttaga agtagtctca gacactaaat atttaggtat       540
     cattctagat aatcgtctta attggtcagc acatatcaac gctcttatac taaaacttca       600
     taaaatcact ggtatcatct ttaaaataaa gcacaagctt cctcaaaaag ttctttttct       660
     catctatcat tctctatttc attctatact ttcctatgta acagctgttt ggggtaatgc       720
     atgtggtctt cttatcaata aacttcaagt agctcaaaat agaatcctaa aaatcatctt       780
     aaatcttcct attcgtagtc acacagtcga tttgtatgta aagaataata ttttacctgt       840
     caggggaata tatgtgtttc aagtttgttg tttcatttac ctttgcttaa ataataaaac       900
     ccatagtaat actaaatttg ttcgttctaa ccatcaatat ggtacaagat atcacgatct       960
     gttgaatcgt cctaacgtaa ccacagtacc tggtgagcgc agtataaatt tcaatggagc      1020
     tcagctttat aattatttta acaatagatt tggtaaaagt tcatccttaa atatcttcaa      1080
     aaatcaacta aagcagtgtt tgtcccgacc tgacatcata gaaaaacttc taaagtccgt      1140
     taatattttc gcttaattat tttgtttagt taattctccg attcawtccc tcgtttgtat      1200
     ttgtatccat cttgaacaca tttatcttgg tagttttctt ttatttattt tcagccgcta      1260
     atcgccagaa accgaactcc ttaaaaggtc tacgccgatg gagttctgga gccagccgca      1320
     tcaactttgt cgttacattt wtatttaatt ttcaatgaca tgtaatctac ttaatttgta      1380
     ttgcacattg aaaagaaaca gttttttcag tcagcacttt gctggctttt tctgtcaaat      1440
     aaaaacaatc aatcaatcaa tcaatcaa                                         1468
//
ID   Crack-11_AAe repbase;    DNA;    INV; 4632 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4632
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1227-1227 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
CC   Closely related to Crack elements in Culex pipiens (Crack-1_CP
CC   to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           289..1323
FT                 /product="Crack-11_AAe_1p"
FT                 /translation="MQKSMSKNVSTCVICRREEKDLRKLLECGYCQKVEHV
FT                 TCKNIVGSAVRKLRCQTYYCSEDCKAQHLRSPKPAEMESQVLKEVRMVLSE
FT                 VKGTRAEMQAEMLAVRTTIGELEKFHNFLSEKLDCLMDDMKLVRREQSELK
FT                 TKYEGLQSDQRATSSTVEQLELEVDRLKRRDLSKNVVIVGVPMVKNESTVQ
FT                 IVKKISVVIGYDLPDDAVLDAKRILSKVQSQNGMKSAPIKVVFSNETHKEE
FT                 LLLKKKSHGPLLLSTIDATFGDGKIVLRDELTSYGMNLLKEVREVQKQFDL
FT                 KYVWPGRNGAVLVKKGDNSKIDVIRCLSDVDLLQRRNLKRQLTVSPEKPAQ
FT                 KR"
FT   CDS           1368..4256
FT                 /product="Crack-11_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYTNNKFDCISDWIEQNKVPIGGSNSLKILQWNIRGI
FT                 NDLAKFDCVGELLQRCKKRIDIVILCETWVKSDRTQMYKLDGYTGVFSSRS
FT                 ESHGGLAVFMRNGLIVEVCQNRAVEGFHHIHCQLLSSGKRINFHAVYRPPS
FT                 YGVREFLDNIENMLSVNRKGDECIIVGDMNVPINMGSNNVVQEYLRLLISY
FT                 NVVVSNTHVTRPSSCNVLDHVICSENLANTVINDTVENTISDHCLIMSSFN
FT                 LACVSETCTLQKEIVDHSRLSELFVSSLVSLPDNMAPGEKLSHIVECYRNC
FT                 LIQCTRTVSIQAKVKGHCPWMTIELWKLISIKDRLFKRHKIHPNDQHTSDL
FT                 LDHVSKLLLKKKKLAKRNYYHTIIEKASQSNAWKVVNEVVGKNNNTDTPNR
FT                 IWKDGVLLSDQGLICSAFNSFFCNIGAQLAATIPSARDPDRFRTTTGHSSS
FT                 IYLSPATLNETITLINDLKERKSPGPDMISAKFIKIHYAIFAPLLTDVFNE
FT                 MISTGNFPECLKVAKVIPIFKSGDPRELNNYRPISCLSVLDKILEKMLACR
FT                 IMNYASHFGLIFSHQYGFRKGSGTLSATCDLVEGIYESLDAKRMVGAVFID
FT                 LKKAFDTINHELLLEKLEFFGIRGTTLTLLESYLTNRQQFVSIGNTISEIR
FT                 TISSGVPQGSNLGPLLFLLFINDICKLNLKGEICLFADDTSLFYKDVQYRN
FT                 IQQQMDHDLNLLYDYFCANKLSLNLKKTKCMFIHSPRRRFPPRLPLTVHGV
FT                 NVEEVHEYVFLGLTIDSTMSWSGHIRNLKKKLSSICGALRRVSNFIPGKWL
FT                 MQLYYTLVHSRLSYLVALWGSASKSILRELQVVQNRCLKIALNKPFRFSTA
FT                 MLYSNRSDNVLPIKALYDLQTLTHVHRISHDPSLHHNIAIRRIQRSRASRQ
FT                 AGNFSLVRPNTEMGRKKLTFYGFKLHNDLRPECKSVNNISIFKKMLTMEMK
FT                 QNVSKYLF"
XX
SQ   Sequence 4632 BP; 1427 A; 954 C; 969 G; 1282 T; 0 other;
     ttcattcaac agtgatctct acattaacca ggccaaggca catcgctgga cgtgttatct        60
     ccacccacgc tagcccggat aaggcaaaaa aatccgaatc tctagtggtc tggtaactat       120
     agccatccgt agcaaaccaa ttgattcttg actcatctat tgtctcacca ccagcatgca       180
     caagcacttt gtcgtataga agctagttga gctgtctttg ttatacacat tcgctttcat       240
     tcgttctaca gttttgtctg tccgtggccg tgaaattatt gttagttgat gcagaagtca       300
     atgtcaaaaa atgtttcgac ttgtgtgatt tgtcggagag aagagaaaga tctgcgcaaa       360
     ttactggaat gcggttactg ccaaaaagtt gaacacgtca catgcaagaa tatcgttggg       420
     agtgcggtac ggaaattacg ttgtcaaacc tactactgtt ctgaggattg caaggcacag       480
     catttaaggt caccaaaacc ggcggaaatg gaatcccagg tcctcaagga ggtccgcatg       540
     gtcctgagcg aagtcaaggg aacgcgtgct gaaatgcaag ctgagatgct agctgtgaga       600
     acaacgatcg gtgagctcga gaagtttcac aacttcttat ccgaaaagct agattgtttg       660
     atggatgaca tgaaattggt aagacgggag caaagtgagc tgaaaacaaa gtatgaagga       720
     ctacaaagtg atcaacgagc aacttcttca actgtagagc aactggagct ggaggtagat       780
     cgtttgaaaa gaagagatct gtcgaaaaac gtcgtcatcg ttggagttcc gatggtgaaa       840
     aacgaatcga ccgtccaaat cgtcaaaaaa atttccgtcg tgattggata tgatctaccc       900
     gatgatgcag ttctggacgc taagcggatc ttatccaaag ttcaatcgca aaacggaatg       960
     aaatcggcgc ctatcaaagt ggtattctcc aatgaaactc acaaggaaga gctgttattg      1020
     aaaaagaagt cacatgggcc actcttactt tcgaccattg atgccacctt tggagatgga      1080
     aaaatcgttc tgcgggatga gctcacatct tatggaatga atctactgaa ggaggtccgt      1140
     gaagttcaga agcaatttga cttgaagtat gtatggccag ggcgtaatgg agctgtacta      1200
     gtcaagaagg gggacaactc taagattgat gtcattcggt gcctcagtga tgtcgacttg      1260
     cttcagcgta gaaatctaaa gcgtcaacta acagtatcac cagaaaaacc agcacaaaaa      1320
     cgatagatgt tggatgtgta caccgctgtt cttgtttgta acccacaatg tatactaata      1380
     ataagtttga ttgtatatct gattggattg agcaaaataa agtgcctatt ggcggatcaa      1440
     attcattgaa aatacttcag tggaatatca ggggcattaa tgatcttgca aaatttgatt      1500
     gtgttggtga actgttgcag agatgtaaga agcgtatcga tattgttata ttatgcgaaa      1560
     cctgggttaa atccgataga actcagatgt ataaattgga tggttatact ggagtgttct      1620
     cctcaagatc ggagtcacac ggggggttag ctgtgttcat gaggaatgga ttgatcgttg      1680
     aagtttgtca gaaccgagcc gtggaggggt ttcaccacat tcattgtcaa ctactttcaa      1740
     gtgggaaacg aattaatttt cacgctgtat atagacctcc atcgtacgga gtgagagaat      1800
     tccttgacaa tatcgagaat atgctatcag taaataggaa aggagatgaa tgtataattg      1860
     tgggagacat gaatgtacct atcaacatgg gatcgaataa tgttgtacag gaataccttc      1920
     gcctgttaat atcctacaat gttgtagttt cgaacacaca tgttaccagg ccatctagtt      1980
     gtaacgttct tgatcatgta atttgctcgg aaaacttggc caataccgtt ataaatgaca      2040
     ctgttgaaaa cacaattagc gaccattgct tgattatgtc gtcatttaat cttgcatgtg      2100
     tatcggaaac ctgcacgcta cagaaagaaa ttgtggatca ctcacgcctc agcgaattgt      2160
     tcgtttcctc tcttgtgtcc ttgcctgata atatggctcc tggagaaaaa ctgtctcata      2220
     tagttgaatg ctaccgtaac tgccttatac aatgcaccag aacggtttcc attcaagcga      2280
     aggtgaaagg gcactgtcca tggatgacaa tagaactttg gaaactaatc agtattaaag      2340
     accgcctatt caagcgacat aaaattcatc ccaatgatca acatacttcc gatctattgg      2400
     accatgtttc aaaattgcta ttgaagaaga aaaaattggc taaacggaac tactaccata      2460
     ctatcattga aaaagcttct caaagtaatg cgtggaaagt agtcaatgaa gtagttggca      2520
     agaataacaa tactgatacc cccaatcgaa tctggaaaga cggagtttta ctgtccgatc      2580
     aaggcttgat ttgttctgca ttcaactcgt ttttctgcaa tattggagct cagttagcag      2640
     caacaattcc cagtgcgaga gaccctgacc gtttcagaac aacaaccggc cattcgtcat      2700
     caatatatct ctctcctgca acgcttaatg aaacaatcac gctgataaat gatttgaaag      2760
     agaggaaatc gccgggtccc gacatgatat cagccaaatt catcaaaatt cattatgcca      2820
     tatttgcccc tctgctgacg gatgttttca acgagatgat aagtaccggt aattttcctg      2880
     agtgcttaaa agtggcgaaa gtgataccaa tcttcaagtc tggagaccct agagaactga      2940
     acaattatcg acctatctcc tgcttatcag ttttggacaa aatactggag aagatgcttg      3000
     cttgtaggat tatgaactat gcatctcatt ttggtctgat cttttcgcat cagtatggct      3060
     tcagaaaagg gtctggcact ctaagcgcga cttgtgatct tgtcgaggga atatatgaat      3120
     ctctggatgc taaaagaatg gtcggtgcag tctttattga cctcaaaaag gcttttgaca      3180
     ccataaatca cgagctgctc ttggaaaaac tggaattttt tggaatcaga ggaacaactt      3240
     taactcttct ggaaagctat ctcaccaatc ggcagcagtt cgtatcaatc ggaaatacta      3300
     tcagtgagat tcgtaccatt agctcagggg ttccccaagg cagtaatctc ggcccattat      3360
     tgttcttatt gttcatcaac gatatctgca agctgaatct taaaggggaa atctgcttat      3420
     ttgctgatga cacttcactt ttctacaaag atgttcaata ccgtaatatt caacaacaaa      3480
     tggaccatga tctcaatctg ttgtatgatt acttctgcgc taataagctg tctctgaacc      3540
     tgaagaaaac gaaatgcatg ttcattcact caccaaggcg tagatttcct cctcgcttac      3600
     ctctcacagt acatggcgtc aatgttgagg aagtgcatga atatgttttc ttgggactta      3660
     caatcgactc cacaatgagc tggtctggac acatcagaaa cctcaaaaag aaactcagtt      3720
     ctatatgcgg agccttacgg agagtatcca acttcattcc tggtaaatgg ttgatgcagc      3780
     tgtattatac gttggttcac tcaagactga gttacttagt agcactttgg ggatccgcta      3840
     gcaaatcgat tctccgtgag cttcaagtgg tacaaaatcg atgccttaag attgctttaa      3900
     acaaaccttt ccggttttct accgccatgc tgtattccaa tcgaagcgat aatgttttac      3960
     cgattaaagc actgtacgat ctgcaaacgc tcactcatgt ccacagaata tcccatgacc      4020
     cttcactgca tcacaacatc gccataagaa ggattcaacg tagtcgtgca tcaagacaag      4080
     caggaaactt ttctcttgtc aggccaaata ctgaaatggg ccgtaagaag ctaacttttt      4140
     atggattcaa gctgcataat gaccttcgtc ccgaatgcaa atcagttaac aacatcagta      4200
     tcttcaaaaa gatgttaaca atggagatga aacaaaatgt ttcaaaatac ttattttaat      4260
     gtcccaaacc acatttcact tatacattac gtatattctt ttgatccgct tccatccaca      4320
     gccgccgccc tccacccacc agccaccgcc cgccatcaac cacccgccgc caacctccca      4380
     ccatcactca acgccttcga aacgaaatgt taagcaatag tagtattgat gtaaagtgtc      4440
     tgaatattat tgttgtagat agtttatgaa gcacacttcc ttaaaagagc ttgagctcac      4500
     tggaaggtgc acacttgtaa taatgaatga aaagatgagg gggtttttac gccttttgga      4560
     gagaaaactt gaaagaagtt tactccaaag ggcttttccc tactccgaaa aaaagataaa      4620
     taaataaata aa                                                          4632
//
ID   Crack-12_AAe repbase;    DNA;    INV; 6168 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6168
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1228-1228 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           365..1504
FT                 /product="Crack-12_AAe_1p"
FT                 /translation="MSELENEAVCYVCEKVEPNLARLISCAYCGRFAHFRC
FT                 KKLFGNVITKVKKNPYLCSVECSEMNSHTNQKTVSFDAVVAELHTLNQGMS
FT                 ESKKEASQLRYVVEQSRLQLAALVKTSGKIEESQQFLSNQFDTLQSDFRQF
FT                 KLDMDTIKTENVKIRSEVGEWQRKHHDLSSKVDSLELELDKANRQLLAKNA
FT                 VVLGLPSMECENTRGLIFQVCRAIGFSLEDTAVTAARRLSGNSANKEGAPI
FT                 LVTFREEKLKQDFFDHKRKHGVLEASIVSEAFKGSTNRVSVRDEMTAFGRE
FT                 LLRYTKEVQLSLGFKYVWPGRNGKVLIRRQDGGKVEQIGTKQDLKLLTSTS
FT                 SKRPLDASIGGVHSMDSSPLASPRTSPQIQQLNKRTR"
FT   CDS           1551..4433
FT                 /product="Crack-12_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MENLYVDNVEFLNKNYGRMNNYCSLRILQFNIRGMNN
FT                 PNKFDSLKEFIDLYTGPIDVLVIGETWLKADRIQLFRLEGYSATFSCRDDM
FT                 AGGGLAVYVRNGINAEVLTNINECGFHHIHVCLKLRSSAFDVHAVYRPPCF
FT                 QQSLFNEKLEGICSCIKNDSSCVIVGDVNIPVNQTESRVVREYLDLLNCYN
FT                 FAVTNTIPTRPASANILDHVVCSENTMGCVVNETMPWEISDHCAILSTFRL
FT                 DHPIQLIQLQKTIVNHTRLNEAFLMAMQNPVGDSAREKMNYAVESYRTYKQ
FT                 RFSKVISINARVKGQCPWMSFDLWKLMRIKNNVLRRSRRRPDDVRLRELLA
FT                 HISRKVQLEKHRSKSFYYTRLFENSNQKSVWRNLDQVLGRKQGINDCIKLT
FT                 VDGDLTSHGSTVADKFNEFFSAIGPQLASSISSNRDINKFGTLQTVRQSIF
FT                 LRPASIQEVIVKINKLNINKSPGHDEIPASFIKTHHAIFASLVADTFNESI
FT                 SSGIFPENLKIARVVPIHKSGNKSEVNNYRPISILSVLSKLLEQLLADRVS
FT                 SFLDEQKVIYDHQFGFRAGSSTWTAASELVDDIYRAMDNRCIAGVLFLDLK
FT                 KAFDTIDHDVLLRKLEYYGIRGTANALFRSYLTARSQYVSVNGATSSKREI
FT                 TVGVPQGSNLGPLLFLLYINDLAKLPLHGKPRLFADDTSVTYTATDPACLI
FT                 NLMKEDILKLQMFFAENLLSLNLGKTNYMIFHSRRKKIDRHAELVVGSTVV
FT                 EKVEVFKYLGLIFDSTLSWSSHVDKLRSDISSYCGLFWRVSKFLPLKQVIT
FT                 MYQAFVHSKLQYLVSIWAAASKTILKPLQSTQNRCLKIVYGKPRLYSTINL
FT                 YTNAALSISPILALKELQTVVMMKNILYNPRIHHNFTLQRAHHPHGTRNRN
FT                 NLFVTRRNTEAGKKSFTYNGFLRYNALPAALKSEMNLMKFKAAAKRYVKSN
FT                 VNLYLI"
XX
SQ   Sequence 6168 BP; 1761 A; 1383 C; 1306 G; 1717 T; 1 other;
     ctggmaacac tgtatcagcc aaaactaggt ggttaagctc cgttctaatt atctgtttat        60
     tggttgtaaa attacatcta aaaagttaat accagtgata ctttggaggg caataaattt       120
     cgctggggtc cgtgacttga tcgcaccgga agcataagta taacattatt tatacgcatt       180
     ttatgagttc acaatcgaag aaggctatcg acatctttta acccacatcc aaatcattcg       240
     tgtagtggtg ttataagtct ctaaatgact ggtgctaacg gtcgttcgat tggtcctacc       300
     tgagctgact tgtggtcttg attgagaata ttacctctac gttgtttata actacagtaa       360
     tacgatgtca gagttggaga atgaagctgt ttgttatgtt tgtgagaaag tggagccaaa       420
     cctggctcgt ctcataagtt gtgcatactg tggaaggttt gcgcattttc gatgcaaaaa       480
     gctatttggg aatgtgatta ccaaagtgaa gaaaaatcct tacttatgct ctgttgaatg       540
     ctcggagatg aactcgcata ccaatcagaa aactgtaagt tttgatgctg ttgttgctga       600
     gttacatacg ctgaatcaag gaatgagtga gtcgaagaag gaggcatctc agttgcgata       660
     cgttgtggag caatctcggt tacagctagc agccttggta aagaccagcg gaaaaattga       720
     agaatcccag cagtttttat cgaatcaatt cgacaccctt cagtctgact ttcgtcaatt       780
     caagttggat atggacacga ttaagacaga gaacgtcaaa atacgcagcg aagtcggcga       840
     atggcaaaga aagcaccatg atctctcttc caaggtagac tctttagagc tggaactaga       900
     caaagctaat cgacaactgt tggccaagaa tgctgtcgta ttaggtctcc cttcaatgga       960
     atgtgagaat accagaggac ttatcttcca agtatgtcgt gctattggat tctcactcga      1020
     ggacacggca gttacagcag ctaggaggct ctcgggaaat tccgcgaaca aagaaggtgc      1080
     tcccatactg gtaacatttc gtgaagaaaa gctgaagcag gattttttcg accataaacg      1140
     gaaacacgga gtactggaag catcgattgt ttcagaagcg ttcaaagggt cgactaatcg      1200
     agtatcggtt cgggatgaaa tgactgcttt cggacgtgag ctactgcgtt acaccaaaga      1260
     ggttcaattg tcgctgggct tcaagtacgt ttggcctgga agaaatggca aggtgctcat      1320
     tagacgtcag gatgggggca aagtagagca aattggaacc aagcaagatc taaaactgct      1380
     tacaagcaca tcttcaaaac gcccgctcga tgcttcaatt ggcggagtgc actcaatgga      1440
     ttcttcgcca ttggcttcac ctcggacgtc gccgcagatt cagcaattaa ataaacgcac      1500
     tcgttaaaag tgaatttcta ttatttgtat cctgatttat aattaatgaa atggagaatt      1560
     tatatgttga taacgttgaa tttttaaata aaaactatgg tcgaatgaat aattattgtt      1620
     ccttgcgaat attgcaattt aatataaggg ggatgaacaa tcccaacaag ttcgattctt      1680
     tgaaggaatt tattgatttg tacacggggc ctattgatgt gttggtaatt ggagaaactt      1740
     ggttgaaggc ggatcggata caactgttta ggctagaggg gtacagcgca acgttttcct      1800
     gccgtgatga catggccggc ggtggattgg ccgtatatgt tcggaacggg atcaacgccg      1860
     aagtattgac caacatcaat gaatgcggtt tccatcatat tcatgtttgt ctaaagctgc      1920
     ggagttctgc gtttgatgtg catgctgtat acagaccacc ctgttttcaa caatctctgt      1980
     tcaacgaaaa gctggaagga atttgctcgt gtataaagaa tgatagttct tgcgttattg      2040
     taggggacgt aaacattcca gtcaatcaaa ccgaatccag agtcgtacgc gaatacttgg      2100
     acttactgaa ttgttataac ttcgcagtaa caaatacaat tccaacgaga cctgctagcg      2160
     ctaacatttt ggatcacgta gtttgctcgg aaaatacaat gggctgtgta gtcaacgaaa      2220
     caatgccgtg ggaaatcagc gatcattgtg ctattctttc tacattccga ctcgaccatc      2280
     caatacaact tattcagctt cagaaaacca ttgtgaatca cacaagactc aatgaggcgt      2340
     tcttaatggc catgcaaaat cctgttggtg attcagctcg tgaaaaaatg aattatgctg      2400
     tggaatcata ccgtacgtat aagcaacgtt tttctaaggt catatcaatc aatgctcggg      2460
     ttaaaggtca atgtccatgg atgagctttg atctctggaa gttgatgcga ataaaaaaca      2520
     atgtcctaag gagaagccgg agaagaccag atgatgtacg attaagggaa ctgctcgcac      2580
     atatctcacg taaagttcaa ctggagaagc atcgttctaa aagcttctat tacactagat      2640
     tattcgagaa ctcgaaccaa aaaagcgtat ggcgaaacct cgatcaagtg ttgggccgta      2700
     aacaaggaat taatgactgc ataaaactga ctgttgacgg cgatttgacg agtcacggat      2760
     ctacggttgc agacaagttt aacgaattct tcagtgcgat cggaccccag cttgcctcct      2820
     ctatttccag taaccgcgat atcaacaagt ttggaacatt acaaacagtc aggcagtcta      2880
     tttttcttcg gcccgcctca atacaagaag taatcgtcaa gattaacaaa ttaaatatca      2940
     ataaaagtcc cggccatgac gagatcccag cctccttcat aaagacgcac cacgccatat      3000
     ttgcttcttt agtagcagac acgttcaacg aatctatttc ctcaggaatt ttccccgaaa      3060
     atctgaagat tgcacgtgtt gttccaattc acaaatcagg caataaatcg gaagtaaata      3120
     actatcgacc gatatcgatc ctatcggttt taagtaaact tctcgagcaa ctcttagccg      3180
     acagagtttc cagttttttg gacgaacaaa aggtaatcta cgatcaccaa ttcggtttta      3240
     gagctggttc aagtacctgg acggctgcga gtgagcttgt tgacgatatc tatcgggcaa      3300
     tggataatcg ttgtattgcc ggagtcttgt tcctggattt gaaaaaagcc ttcgatacca      3360
     ttgaccatga cgtactattg agaaaattag agtactatgg aattcgtggt actgctaacg      3420
     cattgttcag gagctatcta accgcaagat cacaatacgt atcagtcaat ggcgcaacta      3480
     gttctaagag agaaattaca gttggagttc ctcaggggag taatttagga cccttactgt      3540
     ttctgcttta tataaatgat ttggcaaagc taccattgca cgggaaaccg agacttttcg      3600
     cggacgatac gtctgttaca tataccgcaa ccgatcctgc ctgcctcata aatctgatga      3660
     aggaagatat cctgaagctg caaatgttct ttgcggaaaa tctactgtcg ttaaacctcg      3720
     gaaagacgaa ctatatgata ttccactcgc ggcggaaaaa aattgaccgc catgcagaac      3780
     tagtagtcgg atctactgtt gttgagaaag tcgaggtgtt taaatacctt gggttgatct      3840
     tcgactctac cttgagctgg agctcccacg tcgataaact gcgaagcgat atcagttcgt      3900
     attgtggtct cttctggaga gtttccaagt ttcttccatt gaaacaagtc attactatgt      3960
     atcaagcgtt tgttcattct aaacttcaat accttgtttc tatatgggct gctgcatcaa      4020
     aaactattct gaaaccactg cagagtacac aaaatcgatg cctcaaaatt gtatacggca      4080
     aaccccgact atattcaaca ataaatctgt acacaaatgc agctctttca atcagtccta      4140
     tattagcatt aaaagagctg caaaccgtgg ttatgatgaa aaacatcctc tacaacccac      4200
     ggatccacca caacttcact cttcagcgag ctcatcaccc gcatggaacg aggaatcgaa      4260
     ataacttatt cgttactcgt cgtaatacgg aagctgggaa gaaatccttc acgtacaatg      4320
     gattcctgcg atataacgct ttacccgcgg cgttgaaatc ggaaatgaat ctaatgaaat      4380
     ttaaggctgc tgcaaaacga tacgttaaaa gcaatgtaaa cctgtacttg atttagcttg      4440
     actaaattag ctccaacttc atcaatacgt ttccgtatcc acttctaaga catgcacttc      4500
     gcccagaagt tactccagtt ttgcagtaat gtctccagcc tttggatagc actcaacagc      4560
     aataccattg cgctgttagc tcttagtcta cagcgacata gtttttcgtt gtcctttatc      4620
     ctggtgtcct tggtcagcag tagcaccagt ttccctgtca ggtaacatag actggtatat      4680
     gtctggccga agccagtgat actacgccca taacggagtt cgttacgctt ccagaaccac      4740
     gcctgcaatt cgcccagaag ttactccagt tttgcagtaa tttctccagt aattggtgtc      4800
     cttggtcagc agtagcacca gtttccctgc cagcaatgtc tccagcactc agcagcaaca      4860
     acatttcgcc gttagctctt ggactacagc gacaccgttt ttcgacgaat tttatcctgg      4920
     tgtccttggt cagcagtagc accagtttcc ctgtcagcct acagcaacac cgtttttcgt      4980
     cgtagtttat cctggtgtcc ttggtcagca gtagcaccag tttcccttcc aggtaacaga      5040
     aactggtata tgtctggccg aagccagtga tactacgccc ataacggagt cctttaacgc      5100
     ttccagaacc tcgccacgtc ttcgtacaga acgctcagca gcaacacgtt tcccgttagc      5160
     attggctcag cgcagcagta acacagtttc cctgtcagcc tacagcaaca ccgtttttcg      5220
     tcgtagttta tccaggtgtc cttggtcagc agtagcacca gtttccctgc caggtagcag      5280
     aaccggttat gtctgcgaag ccagtgatac tcgcccgtaa cggagtcctt tcgcttccag      5340
     aacctcgcca cgtcttcgtc ggcactcagc agcaacaaca tttcgccgtt agctcttgga      5400
     ctacagcgac agcagtagca ccagtttccc tgtcagccta cagcaacacc gtttttcgtc      5460
     gtagtttatc ctggtgtcct tggtcagcag tagcaccagt ttcccttcca ggtaacagaa      5520
     actggtatat gtctggccga agccagtgat actacgccca taacggagtc ctttaacgct      5580
     tccagaacct cgccacgtct tcgtacagaa cactcagcag caacaacatt tcgccgttag      5640
     ctcttggact acagcggcgg cccagtttcc cgcgcctaca gcaacaccgt ttttcgtcgt      5700
     agtttatcct ggtgtccttg gtcagcagta gcaccagttt cccttccagt aacaccaatt      5760
     tccctgtcag caatgtctcc ggcactcagc agcaacaaca tttcgccgtt agctcttgga      5820
     ctacaacgac accgtttttc gtcgtttttc atccaggtat ccttggtcag cagtagcacc      5880
     agtttccctg tcagcgagac atcatttcaa cggcacatag tcaacagctc atcctaccta      5940
     attcaattta tataaagttt ataatctatc taattagtaa gcttgtatcc tgtagttata      6000
     gtaggcgctt ccttaaaaga gaacatattc tcactggaag tgcacatgat ttgtatatat      6060
     atatatcgaa aagaagagta ggttttatgc cttttggaga agaggataca cttgatcttc      6120
     actcccaagg gcttttccct gctccaaata aataaataaa taaataaa                   6168
//
ID   Crack-13_AAe repbase;    DNA;    INV; 3053 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-13_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3053
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1229-1229 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP). 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2621
FT                 /product="Crack-13_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="HGGLAVFVRNELQMDVCRNIVIEGFHHIHCRFKFEAN
FT                 AINLHAVYRPPSFDVRRFLHEIEGMISLSKNNEKCVLVGDLNIPLNITTNN
FT                 IVGEYIRLLETYNMLPTNTVVSRQSSNNILDHVVCSTSMIEDVFNETIFTD
FT                 VSDHCLICSSINMKCHTSESTLHKRIIDHSRLNELFERSILNIPQNLSVNE
FT                 RLNYVITHYNEILNDCSRLVTQRVKLKGSCPWMTLDLWKLIKIKDKLLKKK
FT                 RNNPNDNHTTELFAHVSKILQDKKAKTKRDYYEGLLSGNNQKAAWKIIKNV
FT                 MGNQKSNSKPTAIRNGAQLITDPQQVCSSFNDHFCAVGPKLSSTINTNRNI
FT                 NRFGTLGSLQSTIFLKPSTRNEIILLINRLDSKKSAGPDGIPVSFIKHHHS
FT                 FFASLLMETFNEIIVSGEFPDCLKIARVIPVFKSGDPKDMNNYRPISTLSI
FT                 IDKLLEKLLVSRILEFSTKHHLIYGQQYGFRQGSSTLTACHELVDEIYDAL
FT                 DNKQIVGALFIDLKKAFDTVDHDLLLRKLESYGIRGIAKDLLKSYLTDRHQ
FT                 YVSIGEHKSQLRLVTTGVPQGSNLGPILFLLFVNDVARLNLHGKLRLFADD
FT                 TAVFYRGTNCDTILNQIKMDLEVLLEYFGENVLSLNLNKTKYMLIHTPRRK
FT                 IPAHGPISIGGHNLDKVYEHEFLGLTIDSVMSWAAHINKLKSKVSSLCGIL
FT                 RKISSFMPQTCLKQIYFALVHSRLQYVTAVWGSASKSHLRELQVLQNRCLK
FT                 IVLRKPLLYPTVNLYSNRNDSLLPIKALYEYQVLVQMQKIVKGTSTHHNTV
FT                 LHMSQQSRSSRQANHIFLFRPNSEFGKKKITYFGSKLYNALPENCKSFQNM
FT                 FHFKRFVRNALKQKVEQFVL"
XX
SQ   Sequence 3053 BP; 984 A; 679 C; 561 G; 829 T; 0 other;
     cacatggagg tttggctgtg tttgtacgta atgaactaca aatggatgtg tgtagaaaca        60
     tcgttataga aggattccat cacattcact gtcggttcaa atttgaagca aatgccatta       120
     acttacatgc agtttaccga ccacccagct ttgatgttag gcgattcctc cacgagatag       180
     aaggcatgat atctctttca aaaaacaacg agaaatgtgt tcttgttggc gacttgaata       240
     tcccgttgaa cattaccacg aataatattg taggcgaata tatcaggtta ttggaaacct       300
     acaatatgct gcctactaac acagtcgtat ctaggcaaag tagtaacaac atattagacc       360
     atgtggtttg ttcaacttca atgattgagg atgtattcaa tgaaactatc ttcactgatg       420
     tgagtgatca ttgtttgatt tgttcttcaa tcaatatgaa atgccatacc tcagagagca       480
     ctttgcataa acgtatcata gaccattctc gactaaacga attgtttgaa cgatcgatcc       540
     tcaatatacc gcaaaatttg tcagttaacg aaagactgaa ttatgttatt acgcactata       600
     acgaaatact gaatgactgt tcaagactag taacacaacg tgtgaaactg aaagggtcgt       660
     gcccttggat gacattagac ctgtggaaat tgatcaagat caaagataag ttacttaaaa       720
     agaaacgaaa caacccaaat gataaccata ccacagaact tttcgcacat gtttcaaaaa       780
     tacttcaaga caaaaaagct aagacaaagc gggactatta cgaaggactt ttgagtggaa       840
     acaaccagaa ggcagcctgg aaaatcatca aaaacgtgat gggcaaccag aagagcaata       900
     gtaaacccac ggcaattcga aacggggcgc agctaataac ggatccgcaa caagtatgtt       960
     ccagcttcaa cgatcatttc tgcgcagtag gacccaagct ttcttccacg ataaatacaa      1020
     atcggaacat caatcgcttt ggaacgttgg gctcgttaca gtcaacaatc tttttgaaac      1080
     cttctacaag aaacgagatc atattattga tcaatcgact ggattccaag aagtcagcag      1140
     gaccggatgg cataccagta tcattcatca aacatcacca tagtttcttc gcatcgctac      1200
     tgatggaaac tttcaatgaa attatcgtca gcggtgaatt tcccgactgt ctcaagattg      1260
     cgcgggtcat acctgtattc aagtccggag atccaaaaga catgaacaac tatcgtccaa      1320
     tttctacatt gtcgatcatt gataagttac tagaaaaatt acttgtctcc agaatactag      1380
     agttttcaac aaaacatcat ctcatatatg gccagcaata tggttttcga caaggatcca      1440
     gcacactcac tgcgtgtcat gaactggtag acgaaatata tgacgcttta gacaacaagc      1500
     agatagttgg agctttgttc atcgacttaa aaaaggcctt tgacacggtt gaccatgacc      1560
     tgctgctacg aaagttggag tcatatggaa taagagggat tgccaaagat ctgctaaaaa      1620
     gctaccttac tgatcgccat cagtatgtat caataggaga acataaaagc cagcttcgcc      1680
     tcgtgactac tggagtccca caaggaagta atttggggcc catattattt cttttgtttg      1740
     tcaacgacgt cgccagattg aaccttcatg gaaaactccg tcttttcgct gacgataccg      1800
     cagtctttta ccgcggtacg aattgcgata ctatccttaa ccaaatcaaa atggatcttg      1860
     aagtgctatt agagtatttt ggggagaacg tgctgtctct taatctcaat aaaaccaaat      1920
     acatgctgat tcacactcca cgaagaaaaa ttcctgcaca cggcccgatt tctatcggtg      1980
     gtcataatct ggataaggtg tatgagcacg agtttttggg cctcactatt gattctgtaa      2040
     tgagctgggc agcacacatc aacaaattga aatcaaaagt tagctctctc tgtggaatac      2100
     tacggaagat atccagcttt atgcctcaaa cctgtctcaa gcagatttat tttgctttgg      2160
     ttcactcacg actgcaatac gtaacagctg tatggggttc tgccagcaaa tctcatctac      2220
     gcgaacttca agttttacaa aaccgctgtc ttaaaatagt gctacgcaaa cctttgctgt      2280
     atcccaccgt caatctatat tcgaatagaa atgactcact gttaccaata aaagccttat      2340
     acgaatatca agtattggta cagatgcaaa aaatcgtcaa gggaacttcg acgcaccaca      2400
     atacggtcct ccatatgagt caacaaagtc gctcatcacg gcaggccaac catatttttt      2460
     tatttcgacc caattcggaa tttgggaaga aaaaaatcac ctattttggt agtaaactct      2520
     acaatgccct accagaaaac tgtaagagct tccagaatat gtttcacttc aaacgttttg      2580
     tacgcaatgc actaaagcag aaagtcgagc aatttgtatt gtaatatgca ttttttctaa      2640
     tgccacttcc gtatctgttc tttgtcattc cacgccacca ccacccttcg ccaccaccca      2700
     ccgccagcca ccaatcacca ccacccactg ctagccaccc gccgccagcc acccgccgcc      2760
     atcgccacca ttcatcactt cacccatcgc ttgccaccaa cttcagtaaa gatcaatgct      2820
     cataaatatt tataatgtga attgaaagtt tgtgaaaatt ctaaactata gcgcttcctt      2880
     caaagagcta cgctcattgg aagtgcagtt atcgctcaat cgttgaatta tacttatttt      2940
     tttgaaaaga tgagaaggtt ttatgcctat gggagaagtg gcttaaagta gctacactct      3000
     cacgggcttt tcccttctcc aagagaaaaa aaagcagtaa ataaataaat aaa             3053
//
ID   Crack-14_AAe repbase;    DNA;    INV; 4676 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-14_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4676
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1230-1230 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           325..1359
FT                 /product="Crack-14_AAe_1p"
FT                 /translation="MDNEPICCVVCKKQEPERNKLITCMYCFSSAHFKCRN
FT                 IIGSAINRVRANMYFCTTSCSEIYKRIVDMQTNHSSMISSLTSELKATVSS
FT                 VVADQMVNVKNEVRSVTTAIEKSQDFLSAKFDDIVSDFKDLKAENECLKQR
FT                 INELTESHSKLTSFVHQLEANVDKSDRKAISKNAVLLGLPCIQNENVLATV
FT                 HNTIAQVGAQIEHDSIVSATRLFVSNKSNVMIPIQIEFKDVSVKEMVLSKK
FT                 REFGKIVSTNINENFLVNGKPTTVSIRDELTPLSLELLRKMRESQELLKIK
FT                 FVWPGRGGGILVKKHEDSKPDVIKTRDDLNRIMNAYSVAMNQSPSPKRKKN
FT                 VY"
FT   CDS           1437..4319
FT                 /product="Crack-14_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDKSLNYYHNHIDEFNVSCGRNSSKYLRVLQWNVRGI
FT                 NDMSKFDNILLSIDHFVVPIDVIILGETWIKADNTGLYKINGYNSIFSSRE
FT                 NSSGGLAVYIRDTIKYNVLENLSSGGFHHISVELKMNGEKYEIHGVYRPPS
FT                 FDFNVFYEFIECWLNKSNSHPCFIFGDVNVPVNLINNNVVLKYKYLLQSYN
FT                 FLCSNSFVTRPASSNVLDHVICKMSDAHRLYNHTILNDVSDHSLILSEFGL
FT                 RFRSDRVVLSKNIVNHDKLHRDFKSFIDTIGVIDNVDTCLSNIIAKYNTLL
FT                 KNCTRTMSKTVNIKGTHCPWMNLELWSLIKLKNNYLKKCRKYPNDSHLAEL
FT                 LKHISSKLDVAKKQTKKRYYENLLNNTTHSKLWKNINSILGKSKTNTELTL
FT                 NVNGQYTSDAKMVCEAFNEHFSTVGCKLAQQIPSTLENPLQYINPISESCF
FT                 LQPASINEVTLLINDLNSNKSSGPDCIPAKIIKNNVVAFSRILADSFNLII
FT                 ETGLYPECLKVAKVIPIFKSGDRCLADNYRPISTLSVFNKIFEKLLVTRLM
FT                 KFFDRNNVLYSMQYGFRSGCSSSIAITELVEKILEETDSKKFVGALFLDLK
FT                 KAFDTLDHNILLSKLDLYGIRGVVNNIIRSYLNTRKQLVSVDGVNSSLKEI
FT                 STGVPQGSNIGPLLFLIYINDICKINLKGTPRLFADDTALFYPNINPELIT
FT                 TNMCEDLRLLQSYFACNLLSLNLKKTKYMIFRSPRKAQPNTPSIIIGTATI
FT                 EKVDSFKYLGLTLDCTLSWDQHIKTVCNKISAMCGVLKRVVSYLPRKALLL
FT                 FYYAHIHSHLNYLTLSWGRACKSKLKKLQTLQNRCLKIIFNLPILFSTVRL
FT                 YTELPHRALPILGICEQQTLQMVHNVLHNPLLHHNITLNIASRIHNTRQFN
FT                 TLSRSRAHSNFGQKRFSFLGPSKYNVLPRHLQQITNSLSFKTNLKEFLRRR
FT                 IPHLLI"
XX
SQ   Sequence 4676 BP; 1513 A; 829 C; 804 G; 1530 T; 0 other;
     cacacttgtt ggttcaccag tggttcctta cgcggttgtg ctctcaaagc ccatgcatat        60
     attagtaatc tagtcataaa ctgaacgagg tatttgctag aataacatgc tcgcaagatc       120
     cgtcaatgaa tgatcacctt atcagtacgc aattcatatt aaatatattt atttgaattt       180
     tcttgaccgc ttctgtactt cgtaatattg atttaacgta atagtgaaac aattcgttga       240
     gcttttaggt tgtccttgtt tcgttctgtt gaatatctgt tttttttttt atcttgcagt       300
     cttgcctctg atacgtatat taacatggat aacgaaccga tctgctgtgt cgtatgcaaa       360
     aaacaagaac cagagagaaa caaactcatt acatgcatgt actgtttctc ttctgctcat       420
     ttcaaatgta gaaacattat tggaagcgcg ataaatcggg tgagagcaaa tatgtatttc       480
     tgcaccacta gttgctcaga aatttacaaa cggattgtgg acatgcagac gaaccattcg       540
     tcgatgatta gttctttaac atctgagctt aaagcaacgg tatcgagcgt cgtagctgat       600
     caaatggtta acgttaaaaa tgaggttcgg tctgtaacta cagccattga aaaatcacaa       660
     gattttttgt ctgcgaagtt tgatgacatt gtgtcagact tcaaagatct caaagcagaa       720
     aatgaatgtt taaagcagcg tatcaatgaa ctaactgaat ctcattcaaa actaaccagt       780
     tttgtccatc agttggaagc gaatgtagat aaatctgacc gcaaagctat ttcaaaaaat       840
     gctgttctgc tagggctccc atgtatacaa aatgaaaacg ttttagctac tgtccataat       900
     actatcgctc aagtcggagc gcaaatagaa catgactcga tagtatcagc cactaggttg       960
     tttgtcagca ataaatctaa tgtgatgatt ccaatacaaa tcgaattcaa agatgtgagt      1020
     gttaaagaaa tggttctgtc caagaaaaga gagtttggta aaattgtgtc aactaacatt      1080
     aatgaaaact ttttagtaaa tggaaaacca actacagtta gtattaggga cgaattgact      1140
     ccgctttcat tggagcttct tcgtaaaatg cgcgagtccc aggaactgct gaagattaag      1200
     tttgtttggc ctggaagagg cggagggata cttgttaaaa agcatgaaga ttcgaaaccc      1260
     gatgtaatca aaaccagaga tgatttgaac cgtattatga atgcttactc ggtcgctatg      1320
     aaccaatcac catcaccaaa gagaaagaag aatgtttatt agtttgttcc atcatcaatt      1380
     tcaatgtaac agtagtctta tgtgtgtatg tttatgtctc aatataaatt ttagtaatgg      1440
     ataagtcttt aaattattat cataaccata ttgatgagtt caatgtgtct tgtggaagaa      1500
     attcttcgaa atatttgcgt gttttacagt ggaatgtccg tggaataaat gatatgagta      1560
     agtttgataa tattttgttg tctattgatc actttgtggt acctattgac gttataatac      1620
     tgggagaaac gtggatcaag gccgataata ctggattata taaaataaat ggttacaata      1680
     gcattttttc tagtcgggaa aattcgtcag gtggattggc tgtgtatatt agagacacca      1740
     taaaatataa tgttcttgaa aatctatcta gtggaggatt ccatcatata tctgttgaac      1800
     ttaaaatgaa tggggaaaag tatgaaattc atggtgttta tcgaccacca tcatttgact      1860
     tcaatgtgtt ttatgaattc attgaatgct ggcttaataa gagtaatagt cacccctgtt      1920
     tcatctttgg cgatgttaat gtacctgtta acctaataaa taacaatgtt gttctcaaat      1980
     acaaatatct tttgcaatct tataactttt tatgttcaaa ttcatttgtt accagaccag      2040
     ccagttccaa tgttcttgac catgttatat gtaaaatgtc tgatgcccat cgcttatata      2100
     accatactat tttaaatgat gttagtgatc attcgctcat attgtcagaa tttggtttac      2160
     gtttccgttc agatagagtt gtgctgtcga aaaacatagt taatcacgat aaactgcata      2220
     gagatttcaa gtcttttatc gataccatcg gagttataga caatgttgac acttgtttga      2280
     gtaatatcat tgctaaatat aatacgcttt tgaaaaactg tactagaaca atgtccaaaa      2340
     cggttaatat taaaggtacg cattgtcctt ggatgaattt agaattgtgg tctttgatca      2400
     aacttaaaaa caactatttg aaaaagtgtc gtaaatatcc aaatgattct cacctagccg      2460
     aacttctaaa acatatatcg agcaaattag atgtcgctaa aaagcaaaca aaaaagaggt      2520
     attatgagaa cttgttgaat aacaccaccc attcaaaatt atggaaaaat atcaactcta      2580
     tcttaggaaa atcgaaaacc aataccgaat tgacactgaa tgtgaatggt caatacactt      2640
     ctgatgcaaa aatggtatgc gaagccttta atgagcattt ttcaacagtt ggctgtaaat      2700
     tggcccaaca aattccatct acacttgaaa acccattgca gtacataaat ccgatttcgg      2760
     aatcatgttt tctacagcct gcttctataa atgaggttac acttcttatc aacgacttga      2820
     attcgaacaa aagttccggc ccagactgca taccggcaaa aataatcaaa aacaatgttg      2880
     tagccttttc ccgtatactt gcggattctt ttaacttaat aattgaaaca ggtttatatc      2940
     ctgaatgcct caaagttgct aaagtcatac caatttttaa atcaggagat cgctgtttag      3000
     cagataatta tcggcctata tccactttat ctgtatttaa caaaatattt gaaaagcttt      3060
     tggtgacacg tttaatgaag tttttcgaca ggaataatgt attatacagc atgcaatacg      3120
     gttttcgctc tgggtgcagc agttcaatag ccataacaga actagtcgaa aagattcttg      3180
     aagaaactga ttctaaaaag tttgtcggtg ctctgtttct tgacttgaaa aaggcatttg      3240
     atactttgga ccacaacata ttacttagca agctagatct gtatggaata agaggtgtcg      3300
     ttaataatat tattcgtagc tacttgaaca ctagaaaaca gttggtatca gttgatgggg      3360
     tgaacagttc tctaaaagaa atatctacag gagttccgca agggagcaac attgggcctc      3420
     ttctttttct aatttacata aatgatatat gcaaaattaa tctgaaaggt actccgaggc      3480
     tttttgctga cgatacggca ttgttttacc ctaatataaa tcccgaacta ataacaacaa      3540
     atatgtgtga agatctgcgt ttacttcaaa gttattttgc ctgcaatctc ctttctttga      3600
     acctgaaaaa aacaaagtat atgattttca gatcaccaag aaaagctcaa ccgaatacac      3660
     ctagcatcat tattggtact gctactatcg aaaaagttga ttcctttaaa tatttgggtc      3720
     taacccttga ttgcacatta tcttgggatc aacatattaa aacggtctgc aataaaattt      3780
     cagcaatgtg tggagtcctt aaacgagtag tatcctacct tccacgcaaa gctttacttc      3840
     tgttttatta tgcccatatt cattctcatc tgaattatct tactctttca tggggtagag      3900
     catgcaaatc taagctcaaa aaacttcaaa ccctccaaaa tcgctgcctc aaaattatct      3960
     tcaatttacc aatcctgttt tcaactgtcc gtttgtatac tgagctaccc catcgcgctt      4020
     taccaatttt aggaatctgc gaacagcaaa cgctgcaaat ggttcataat gttctccaca      4080
     atccgttatt acatcataac ataaccctca acattgcttc tcgtattcat aatactagac      4140
     aattcaatac tctctctcga tctagagcgc attccaattt tggtcaaaaa cgtttttcct      4200
     tccttggtcc ttcgaaatat aacgtcttac ctagacatct ccaacaaatt actaacagct      4260
     tgtccttcaa aactaacctt aaagaattcc tgcggcgaag aattccacat ttacttattt      4320
     gaattgaaac tatgtcgtaa aaacaaaaaa aagttaatcg tctccaaaca attagtttaa      4380
     ctgtttagta ataataattc gtatttattt ataatttcgt atttgtagtg taaaattttc      4440
     tttttcatat gtgcttcttt aaaaggattt acaatccact agaagcactt agcttagtta      4500
     ttttgtttca aactccctgt tgttgtcatt tttgattatt ctcagcctct tataaatatt      4560
     tgttttctta atttagtgtt gcctgtggct gagaattgag tgtccattac cagggggctc      4620
     gtcatgagct ttttggtatg ggggagagcg gagggtcact caaaaaaaaa aaaaaa          4676
//
ID   Crack-15_AAe repbase;    DNA;    INV; 5789 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-15_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5789
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1231-1231 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >95%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           380..1474
FT                 /product="Crack-15_AAe_1p"
FT                 /translation="MMSESENDVFCYVCEKAEKDSQRLIECSYCGKCAHFR
FT                 CKKLYGSAVASAKSKPFFCSVECCEMCLRGSKQTATNDDIIRELQLLGKAV
FT                 NEVKQDSDKFRAVLEKSQQQISEIVATSKQIERSQDFLAEQFDHLQADFKS
FT                 FKEEVGEVKAENSKIRMELKAWQETCGELAGTVDRLEVDLDRVNRAAKVKN
FT                 AVLLGLPMIENENTVKLASKVCELLKCGFNSATAIVSARRIIGKQQTNGVS
FT                 PILVSFNSEQEKEELFQRKRAHGTVLTSNICAAYNGSTRTVTIRDELTVYG
FT                 RELLQEAKSLQETLKIKYIWPGRDGKILLKRQDGSKIEKITSKLQLASLQP
FT                 TNLKRVLNVSGTSPPLIPQPKR"
FT   CDS           1641..4421
FT                 /product="Crack-15_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNNINKFDWLKETLELYSGVIDVIVIGETWVKSDRQQ
FT                 MYNIDGYQSIFSCRPDSQGGGLAVFVRSVISFDEIANEHTNGFHHVHLRLD
FT                 IGESPFHIHAIYRPPSFDLSSFFSNLDQICAAAGRCGSSIIIGDINIPTNR
FT                 AGCRIVNEYINLLDCYNFSITNTYPTRPSSGNVLDHTICSESLQNVVTNET
FT                 IXTDMSDHCLVLSTFSLQKPVKKLHLEKTIVSNHKLNMAFQNAMTNIPNGS
FT                 AEVRLQFVLNTYNTLKIQFSKTVSVEAKIKGFCPWMSFDVWKLIKIKENIL
FT                 RNWRRNPANVRCKELLDHISKKVQQAKDHAKKSYYRNLFTTANQRNTWKNI
FT                 NKILGRDRRATENVKLTVNGHQTTDSPTVANAFNDFFCSIGPQLAATIRSS
FT                 QDINKFNTLIPQRQSIYLEPTTEQEVILLIKELKNGKSSGVDGISAEFMKH
FT                 HHNVFAVLLRDIFNECITLGTFPDCLKIARVIPVHKGGSKLDVNNYRPISI
FT                 LSVLSKVLEKLLVTRVDNFLRQHDVLYCRQYGFREGSSTWTAASELVDEIY
FT                 NXLDNRKIEGVLFIDLKKAFDTIDHRVLLRKLNYCGIRGLANKLFESYLTG
FT                 RKQYVSVNGAFSSERDVTVGVPQGSNVGPLLFLLYINDLAKLKLHGNPRMF
FT                 ADDTSLSYQNANPDLIIQHMKEDLTVLHHFFAENMLSLNLLKTKFMLFHSP
FT                 RLKIPRHADLVVNTTVVDKVQSFKYLGLTFDSKLQWNEHISSLQRELSATC
FT                 GVMWKVSKFMPQKELLAMYHAFVQSKLQYLVSVWGAATKTAIRALQSTQNR
FT                 CLKILYQRPLLFSTLRLFKEAADAILPIAALREKEGLVKMHNILTNPRTLH
FT                 NRQLQHTSTRYPLRSQAVLVIGRPKTEAGKKSFAYFGYNRYNALPPHMKAE
FT                 RNMERFKKMVLCLIRSKIATYVD"
XX
SQ   Sequence 5789 BP; 1731 A; 1296 C; 1215 G; 1543 T; 4 other;
     ggccctggat tttaattaca cagttgcttt catagtgctc cgctataaat agctaatata        60
     acgaaaatac tgactaaacg gtcgaggatt gcgtggaagt ggaaagttaa gacaaggcag       120
     ctggggtctc catcgctatg taaagcattt cacaactgaa tttgctaaaa taaggtattt       180
     taagtatcgt tcgtaagctg atatatcatc tattcatcca cattgaactc cgacgcgtgt       240
     tgtgatgtac tcgcatgctt actccgacaa tcaccaacac acttgaggct ttgtcgtttg       300
     gttgatattg tttttcatat cgtcattcca ctgtttcaca acaaaatttc ttccatccat       360
     cgcgtaatat atggtctgaa tgatgtctga aagtgaaaac gacgttttct gctatgtttg       420
     tgaaaaagca gagaaggatt cgcagcgatt gatcgaatgt tcatactgtg gcaaatgtgc       480
     tcattttcga tgcaagaaac tttacggaag tgcagttgca agcgcaaaaa gcaaaccgtt       540
     tttctgctcg gttgagtgct gcgagatgtg tctacgagga agcaaacaga cggcaacaaa       600
     cgacgatatc atccgtgagc tgcaactgct tgggaaggct gtgaatgagg tgaaacagga       660
     ctcggataag tttcgtgctg tgctagagaa atcacagcaa cagatctccg aaatcgtcgc       720
     tactagcaag caaatagaga ggtcccaaga ttttctggct gagcagtttg accatctaca       780
     agcggatttc aaatcgttca aggaagaagt aggggaggtg aaggccgaaa actcaaaaat       840
     ccggatggag ctgaaggcgt ggcaagagac gtgcggcgaa ctagctggaa ccgtggatcg       900
     cctagaagtt gatctggata gagtcaacag agcagccaaa gttaaaaacg ctgtgctgct       960
     aggcctacca atgattgaaa atgaaaacac cgttaaatta gcatcaaagg tgtgcgagct      1020
     gctgaagtgt ggattcaact ctgctactgc gatcgtttct gctaggcgta tcattggtaa      1080
     gcaacaaaca aacggtgttt ctccaatcct agtttcattc aattcagaac aagagaaaga      1140
     agaactattc cagcgtaaac gtgcccatgg aactgtgctg acatccaaca tatgcgcggc      1200
     ttacaacggt tctacacgga cggtcactat tcgagatgaa ttgacggttt atggaagaga      1260
     gctactacag gaagctaaaa gcttgcagga aacactgaag atcaagtaca tctggccagg      1320
     aagagacggg aagatactat tgaaaaggca ggacggatcg aaaatagaga agatcaccag      1380
     caaactccaa ctggcaagtc tacagcccac aaacctcaaa agagtgctca acgtgtctgg      1440
     cacatcacca cctttaatcc cgcagccaaa acgttaacat gtctaatttg taattttctt      1500
     attctttgta tttgtttaaa ctgatcttaa taaatgtgat taattattat tttgattcta      1560
     ttgctcaact aaataaaaac ttcaacagta gtcttgtagt taattttcaa ctgaaagtat      1620
     tgcaacttaa tataagagga atgaataata taaacaagtt tgactggctt aaagaaacac      1680
     tagaactgta ttcgggagta attgatgtta tagtaattgg cgaaacgtgg gtgaaatcgg      1740
     atcgacagca gatgtacaac atcgacggat accagagtat tttctcgtgt aggcctgatt      1800
     cccagggtgg aggtttagca gtgtttgttc gatcwgtaat ttcattcgat gagatagcta      1860
     atgaacatac caatggattt catcacgtgc acttacgcct tgacatcgga gaatcaccgt      1920
     tccatataca tgcaatatac cgacctccat cgtttgactt gtcatcattc ttttcgaact      1980
     tggatcagat ctgtgcggca gcaggacgtt gtggctcctc catcatcata ggtgatatta      2040
     acatcccaac caatcgtgct ggatgtcgca ttgtaaatga atatataaat ctcctagact      2100
     gctataattt ctctattaca aacacctacc ctacaagacc gtctagtggc aatgtacttg      2160
     atcacacaat atgttctgaa tcgctgcaaa acgtagtaac taatgagaca atttwcactg      2220
     atatgagtga ccattgctta gtgctatcta cgttctcact acaaaaaccc gttaaaaaac      2280
     tgcatctaga gaaaaccatt gtttccaatc acaaactgaa tatggcattt caaaatgcaa      2340
     tgactaatat tccgaatgga agtgctgagg tcagactaca gttcgtcctg aacacctaca      2400
     acacgttgaa gatacagttt tcaaaaactg ttagtgtaga agccaaaatt aagggatttt      2460
     gtccgtggat gtctttcgat gtttggaaac tgatcaaaat caaggaaaac attctgagga      2520
     attggaggcg taatccagct aacgttcgct gcaaggagtt attggaccat atctccaaga      2580
     aagtgcaaca ggcaaaagat catgctaaga agagctacta tagaaactta ttcacgaccg      2640
     ctaatcaaag aaacacctgg aagaacatca ataaaatcct aggccgagac agaagggcaa      2700
     cagagaacgt gaagctaact gtcaatggac atcaaacaac tgatagtccc accgtagcga      2760
     atgccttcaa cgacttcttc tgttcgatcg gaccccagct tgccgcgacg attcgcagta      2820
     gccaagacat caacaagttc aacacattga ttcctcaaag acagtcgatc tacttggaac      2880
     ctaccacgga gcaagaagta attctgctga taaaggaact gaaaaacggt aaaagtagcg      2940
     gagttgatgg tatctcagct gagttcatga aacaccatca caatgtattt gctgtacttc      3000
     tgcgtgatat cttcaacgaa tgtatcaccc tgggaacctt tcccgattgt ctaaaaattg      3060
     cacgtgttat tcctgttcac aaaggaggca gcaaactgga tgtcaacaat taccgcccta      3120
     tttcaatcct gtcggttcta agcaaagtac tggaaaaatt gctagttacc agggtagaca      3180
     actttctacg acaacatgat gtactttact gccgacaata tggattcaga gagggatcaa      3240
     gcacatggac ggcggctagc gagttggttg atgaaatcta caatkgcctg gacaaccgga      3300
     aaatagaagg agtattgttt atcgacttga agaaggcttt cgatacgatc gaccatcgcg      3360
     ttctattacg aaagctgaac tactgtggga taagagggct ggcaaacaaa ttgttcgaga      3420
     gctatctgac tggaagaaag caatatgtgt ctgtaaacgg agcattcagt agcgaacgtg      3480
     atgtgacggt aggagttccc caaggcagca atgtaggccc tcttctgttt ctactgtata      3540
     ttaatgactt ggcaaaactg aaattacacg ggaaccctag aatgtttgcc gatgacacgt      3600
     ccctatcgta tcagaatgca aatccagatt tgatcattca acatatgaaa gaagatttga      3660
     ccgttctgca ccactttttt gctgaaaaca tgttgtcact gaatctctta aaaacgaaat      3720
     ttatgctgtt tcattcacct cgcctcaaaa ttcctcgaca tgcggatctg gtagtaaata      3780
     cgactgtagt tgacaaagtc caatctttca agtatctcgg cctcaccttt gattcgaaac      3840
     tacagtggaa cgagcatatt tcgtcactac agcgagaatt aagtgccacg tgtggtgtaa      3900
     tgtggaaagt atctaaattt atgccccaga aagaattgtt ggcaatgtac catgcatttg      3960
     ttcaatcgaa actccaatat ctggtatcag tctggggagc tgcaactaaa actgcaatca      4020
     gagcactaca atcaacacaa aaccgctgct tgaaaattct ttaccaacga cctttgctgt      4080
     tttcaactct gagattgttc aaggaagctg ccgacgcgat tctacccatt gctgcacttc      4140
     gtgagaaaga aggactagtt aaaatgcata atattttaac caatccccgc actttgcata      4200
     atcgacaatt gcaacacaca tctacccgat acccactcag aagccaggca gtcttggtga      4260
     ttggccgtcc aaaaacggaa gctgggaaaa aatccttcgc atactttgga tacaaccgtt      4320
     acaatgctct acctcctcat atgaaagctg aaagaaatat ggagcgtttc aaaaaaatgg      4380
     ttctgtgtct gataagaagc aaaattgcaa cgtacgtaga ctaagcatca gattgctagg      4440
     tcagggagaa tcgccagtgt cacgtccagc tccttcactt ttcaacgcca accacactcc      4500
     gctgttccgt caacgcctgc gcctgcttgc tcggtcagga agaatcgcca gttacttttc      4560
     caggtaatga agactggtat atgtctggcc gaagccagtg gtgctacgct cgttaaattt      4620
     gctcgtaaat ggttccagct cctccacttt tcaacggcaa tcacaccccg ctgttacgtc      4680
     aacgcctgcg cctggtcgcg gtcaagaaga atcgccagct acttttccag ctcctccact      4740
     gttcaacggc aatcacactc tgctgctccg tcaacatctg cgcctggtgg ttcggtcagg      4800
     aagaatcacc agttcctttt tccaggtaat gatgactggt atatgtctgg ccgaagccag      4860
     tgatgctacg ctcgttaaat ttgctcgtaa atggttccag ctcctccact tttcaacgcc      4920
     aaccacactc cgctgttccg tcaacgcctg cgcctggttt ctcggtcagg aagaatcgcc      4980
     agctactttt ccagctccat cactctacaa cggaaattag tttgtcctgc atctttacgc      5040
     taccgatgac cctgaacatg ctgtccccac gctacttcaa cagtactcag ctgtttcgtc      5100
     aacatctgcg cctggtggct cggtcaggaa gaatcaccag ttcctttttc caggtaatga      5160
     tgactggtat atgtctggcc gaagccagtg atactgcgcc cattaaaatt gtcttcaaat      5220
     ggttccagct ccatcacacg tcaacgccaa tcagtttgcc atgcaccttt acacaagcga      5280
     tgacccgatc cttgagcatg acgcccccac gctgctccaa cagaactccg gtgctccgtc      5340
     aacaacagcg cctggttgct cggtcaggaa gattcgccac ttacttctcc agcttttcac      5400
     tgcttaacgc caaccacact tcactggtgc gtcagcatcg gcgcctggtt gctcggttag      5460
     gaagaatcgc cagaagacct ttcctgcaga tatcaccgct gatcatcaat cctcgccatg      5520
     tgtttttctc gttgctcgaa ttgttatttt ttgaattcaa attwtttgta gccgtgtaaa      5580
     ttagtaatta ttaatttagg aagttaatta attgaattag atttaccgca ctcccttcaa      5640
     agagaattat ttctcactgg aagtgcatgt ttattgtaat gttttgatga aaagaagaga      5700
     aggttttatg cctctaggag aagtgcttcg aaaggaacgc cactcctagg ggcttttccc      5760
     tactccaata aataaataaa taaaaaaaa                                        5789
//
ID   Crack-16_AAe repbase;    DNA;    INV; 5491 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-16_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5491
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1232-1232 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >97%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           1120..2172
FT                 /product="Crack-16_AAe_1p"
FT                 /translation="MDNESIICVECNKIEKDASKIITCMYCFSEAHYKCRN
FT                 IGANAARRFKDRMYFCSHNCSSIYQRITEMQNNKSSIIESLAVELKGAVAN
FT                 AVSQEIQCVRSEVKQVTTAIEKSQDFLSNKFDAIVTDFQELKKENESLRRE
FT                 VDKLKNVQQNLSQTVYKLEHQVDKTSRDANSKNAVILGVPFLPDENTQEIA
FT                 QKMITCLGADVAADAISAAARINSKNKPKNSLVPIRVVFKDECVKETVFSQ
FT                 KKECGKIMSTSIDPNFTINGNPTSVTIRDELTPLSMELLNEMRRHQEKLKI
FT                 KYVWSSRGGNVLVKKNENSKPEIVKTRDDLIELVNRYTGNLSPKDTPSPKR
FT                 KCSSNNFN"
FT   CDS           2224..5103
FT                 /product="Crack-16_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANEINFYHESIDDFNLKYPYTNQNYIRIAQWNVRGI
FT                 NNMQKFDEVLMFLDSIKIPIDVFCVGETWLKANNCPLFSIPNYDPIFSCRE
FT                 TSSGGLAMYIRSGLSFNIVKTFSNEGMHLIHVEIKINGLLYDVVGVYRPPS
FT                 YDFEKFHDELEFLLSTHGSRPLFVVGDVNIPMNLTNNNVVSRYKSLLDSYN
FT                 FVCSNTHVTRPISNNVLDHFVSRKEDLPYVRNDTVYSDVSDHLIVVTSFKI
FT                 NDPKERIVLTKKIVNKDLLNQRFKHFLDTFTCRQDVNDSIITLISAYNNIL
FT                 QECTKIKSEKINAKAKHCPWLNYYIWQWIKLKNKYLKKVKNDPNNDNLKEM
FT                 FRHVTKKTDEAKKRCKTEYYKSLLDHTCQSKMWKNLNELMGRKKSNTKIEL
FT                 NNEGYKTSNSLEVCEIFNQYFSNIGIKLAKTIKSNNRNPLSTVTRVEQTIF
FT                 LRETNVPEVTSILNDLNVRKSCGPDNFPSSIIKYNTNKFSHIFMELFNQIL
FT                 IQGKYPDCLKVAKVTPIFKSGDKSDPCNYRPISTLSVFSKVFEKLLVSRIT
FT                 DFLNKYNVLYKFQYGFRKDCSTSTAIVELVDFLIRKIDNKFTVGGLFIDLK
FT                 KAFDTLNHDILLQKLECYGIRGLAYEIIRTYLCDRQQFVMLQDAQSSLQTV
FT                 NIGVPQGSNIGPLLFLLYINDIGNLPLKGTPRLFADDTALFYPHFETSCII
FT                 DFINHDMLLLVRYFDTNLLSLNLSKTKYILFHSPRKKIVSHNNPIVGTTAI
FT                 EKVKNFKYLGLILDATLSWKEHIEHLRNKIASLCGLMHRVKTFVPKHTLLS
FT                 FYYSCIHSHLLYLIIVWGHASKSNLQKIQVLQNRCLKIIFHLPQLFSTVQL
FT                 YSNVSHNILPLRGLCKLQTCLFMYDILKKPNMHQNLSFTVSNHEHNTRYAN
FT                 NLLRSRASTCLGQMRISFFGPSEYNALPESLKTLNNRSLFKTSLKRHYKSS
FT                 ISDFL"
XX
SQ   Sequence 5491 BP; 1794 A; 926 C; 984 G; 1786 T; 1 other;
     ctggcaacac tgttgtttac ctgatacgtg tctctaacga ttgacttttc aacttaagtt        60
     taaagagtgt aaatcattta gaaaattatt ttgcacacct caacctgttt gtgagtaatg       120
     ttcttatgat tgtcttgtaa tcagtgatat ccatattgcg ttaaaagtgg tttaaaagtt       180
     tgttttttgt atgagatgat ttctccacta tagacatctt aattgtttgc tgctgaattg       240
     ctgaattgat ccgttgactg ctgctgtttt tgttgctgta cagatgtttc ccgatactta       300
     tgcgtgaata atcaatcgag ctgtgttggt gctgttataa ctctacttgt tgcacacaat       360
     ttggttcttg tcaactctga ccgaagtgaa atacatgtct gagtaattat atgttggttt       420
     aacagattaa gtgaaaatag agcgaacggg cgtcgtacac aatcaagccg ttggctcgcg       480
     cttggtgtat gggtgctgaa gtagttctac tagtagcgca cactgtgttt ctgtttattc       540
     taattatata accaaaagct gtacggtagc ctaggcagtg tagatagatt tagcgaacgg       600
     gggtgaacgg gcgtcgtaca caatcaagcc gttggttcgt gcttggtgta tgggtgctga       660
     agtagtcttc tctagtagca cattgcgtgg ttctgttgac atacataagg cgaaataact       720
     tgcatgcaag tttgagtagt ttttggtcag cagatttagc tgcaataggg taaacagtaa       780
     actagcaaac ctcgactcaa attaatgaac catttaatac caaagattag aatttaaaag       840
     ttgaaacata agaagtaaat ggctgaacgg gkcactgaag cttatcagta ataattgttt       900
     taagttgatt tcttacctaa gttatacttt ttttctattt ttattgcaat ctttcactgc       960
     ttgttatttg tcaatgagtt atttgtctat gaggtccttg ttgtgtggtg agtaatattt      1020
     attcattttt ctttgttttt ttttcttaca gttgtccttt atttatttac attttatttt      1080
     atttgactcg gatttgtgtg ttattttaaa ctggtcggta tggataacga aagcattatt      1140
     tgcgttgagt gcaataaaat tgagaaggat gctagtaaaa tcatcacttg tatgtattgc      1200
     ttctctgagg cacattataa atgccggaac attggtgcaa atgcggcaag gcgtttcaaa      1260
     gacaggatgt acttctgttc tcacaattgc tccagcatct atcaaaggat caccgagatg      1320
     cagaacaaca agtcgtctat tatagaatct cttgcagttg aacttaaggg agctgtcgct      1380
     aatgctgtct ctcaagaaat acaatgtgtt agaagtgagg tgaagcaggt tacaactgca      1440
     attgaaaagt cccaggattt cctctcaaat aaatttgatg ccattgttac cgattttcaa      1500
     gaattgaaaa aagagaatga atctttgcgg cgcgaagtag ataagctgaa aaatgtccaa      1560
     caaaatctat ctcaaacagt ttacaaattg gagcatcaag tagacaaaac aagtcgtgat      1620
     gcgaattcca aaaacgcagt tatcttaggt gtcccttttt tgccagatga aaatactcaa      1680
     gaaatcgctc agaaaatgat tacttgtctc ggagctgatg tagctgctga tgctatctct      1740
     gctgccgcta gaataaattc gaaaaataaa ccgaaaaatt cgttagttcc tattcgtgtt      1800
     gtgttcaaag atgaatgtgt caaagaaact gtctttagtc aaaaaaagga atgtggtaaa      1860
     attatgtcta cgtcaataga tcccaacttt actatcaatg gtaacccaac aagtgtcact      1920
     atacgcgatg agttaacgcc tctgtctatg gaactcttga atgagatgag aagacatcaa      1980
     gaaaagctta aaattaagta tgtttggtct agtagaggag gaaacgttct agttaagaaa      2040
     aatgaaaact caaaacctga aattgtaaaa acaagggacg atttgattga attggtgaat      2100
     cgttacacag gtaacctctc acctaaagat actccttctc ccaaaaggaa gtgtagtagc      2160
     aataatttta attaataagc tttatatgtg tgtagttgta aatttttgat tcataaatgt      2220
     aaaatggcta acgaaataaa cttttatcat gaaagcatcg atgatttcaa tttaaaatac      2280
     ccttatacca accaaaatta tattcgtata gcacaatgga acgttcgagg aataaataat      2340
     atgcaaaaat ttgatgaagt gcttatgttc ttagacagta taaaaatccc tatagatgtg      2400
     ttctgcgttg gtgaaacttg gctgaaagct aataattgtc ctttgtttag tataccgaat      2460
     tatgatccca tcttctcctg tcgtgaaacg tcctctggtg gtcttgcaat gtacataaga      2520
     agtggtttga gttttaatat cgtcaaaacg tttagcaatg aaggaatgca ccttattcat      2580
     gtagaaatca aaataaatgg tcttctctat gatgtagtag gtgtttacag acctccatca      2640
     tatgattttg aaaaatttca cgatgagtta gagttcttgt tgtcaaccca cggttcacgt      2700
     cctctttttg tagtaggtga tgtcaatatc ccaatgaatt tgacgaataa taatgttgtt      2760
     tcacgctaca aaagtctctt ggactcgtat aattttgttt gctcaaatac gcatgtgact      2820
     cgaccaatca gtaacaatgt cttggatcac tttgtcagta gaaaagagga ccttccttac      2880
     gtcagaaacg acacagtgta ctcagatgtt agcgatcacc tgattgttgt aacatcattt      2940
     aaaattaacg atcctaaaga gcgtattgtg ctaacaaaaa agatcgtaaa caaagaccta      3000
     ttaaaccagc gcttcaaaca ttttctggat acttttactt gccgccaaga tgtgaacgat      3060
     tcgattataa ccttaatttc tgcatataat aacattctgc aagaatgcac aaagattaaa      3120
     agtgaaaaaa taaatgctaa ggcgaaacac tgcccatggc ttaattacta tatttggcaa      3180
     tggataaaac tcaagaataa atatctgaaa aaagttaaaa atgaccctaa caatgataac      3240
     ttaaaggaaa tgtttcgaca tgtaactaag aaaaccgatg aagcaaaaaa acgatgtaaa      3300
     acggaatatt acaaaagtct tctagatcat acatgtcaat caaagatgtg gaaaaattta      3360
     aatgaactta tgggtaggaa gaaatctaat actaaaattg aattgaacaa tgaaggttat      3420
     aaaacaagta atagcttgga agtatgtgaa atattcaatc aatatttttc caacattggt      3480
     ataaagcttg ctaaaacaat caaaagtaat aaccgtaatc ctttgagcac tgtaactcgc      3540
     gtcgagcaaa caatttttct aagagaaact aatgtaccag aggtcacttc tattctaaat      3600
     gatcttaatg tcaggaaaag ctgtggacca gataactttc cctccagtat cattaaatat      3660
     aatactaaca agttttcaca tatcttcatg gaactcttca atcaaatact tatacaaggt      3720
     aaatatccag attgtttaaa agtggctaaa gttacaccta ttttcaaatc cggtgacaaa      3780
     tctgatcctt gtaattatcg tcctatttca acgttgtccg tatttagtaa agtttttgaa      3840
     aagttgcttg tcagcagaat tacagatttt ttgaacaaat ataatgtgtt atataaattc      3900
     caatatggat ttagaaaaga ctgcagtacg tctactgcca ttgtagagct tgttgatttt      3960
     ttgatcagaa aaatcgataa taaattcact gttggaggct tattcatcga cctgaaaaaa      4020
     gcatttgaca cgttgaatca tgatattctt ttacaaaaac tggaatgtta tggcatacga      4080
     gggttggcat atgagataat tagaacctac ttgtgtgatc ggcaacaatt cgtaatgtta      4140
     caagatgcgc aaagttctct tcaaactgtt aacattgggg ttccacaagg aagtaacatt      4200
     gggccacttt tgtttctctt atacataaac gatattggaa acttgccact gaagggcact      4260
     ccaaggctgt ttgctgatga cacagcactg ttttatcctc attttgaaac ttcatgcatt      4320
     atagatttta tcaatcacga catgcttttg cttgtaagat atttcgatac aaatttactc      4380
     tcccttaatt tgtcaaaaac aaaatacatt ttgtttcatt caccgaggaa aaaaattgta      4440
     tcacacaaca accctattgt gggaacaacg gcgattgaaa aagtgaaaaa tttcaaatac      4500
     cttggtctga tattagatgc caccctttcc tggaaagagc atatagagca tcttcgaaat      4560
     aaaattgctt ccctttgtgg tctaatgcat cgcgtgaaaa catttgtacc gaagcataca      4620
     ctattaagtt tttattacag ttgtatccac tcacatctgt tgtacctcat tattgtttgg      4680
     ggtcatgcaa gcaaatcaaa ccttcaaaaa attcaagttt tgcagaatag atgcctcaaa      4740
     atcatttttc atttaccgca actattttcc actgttcagc tctactccaa cgtttcgcac      4800
     aacatccttc ctttacgtgg cttatgtaag ttacaaacat gtttgtttat gtatgatata      4860
     ttgaaaaaac caaatatgca tcagaacctc agcttcactg tttctaatca tgaacacaat      4920
     actcgttacg caaataactt attgcgctca cgagccagta cttgtctagg ccaaatgaga      4980
     atttctttct tcggaccatc cgaatataat gcacttcctg aaagtttaaa aactctgaat      5040
     aatcgatcgt tgttcaaaac cagtttaaaa cgtcactaca aatccagtat aagtgatttt      5100
     ttgtagaacc gtatcagttg ccagtatgat ttagtatgat ttacactctg tcgtgtttta      5160
     tttacaatct gtcgtgtttt cacatattta atcaatatta aaataaattc tcccaattta      5220
     gttttaaata tcatgaaata gggctccctt aaaaggaatt tttattccac tgggaaaccc      5280
     cctatatatt catagtgtat aaatgcctca tcactgttca tccattcaat gtaaactgtt      5340
     taaatgttac gtgtttactg ttgtgcttgt tttttttttt tgtaaaatat aaataatacg      5400
     atagatgcgt ccactaccag ggggctccga aaatgagtct cttggtgtgg gggatagtgg      5460
     tgggccataa aaaaaaaaaa agaaaaaaaa a                                     5491
//
ID   Crack-17_AAe repbase;    DNA;    INV; 5261 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-17_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5261
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1233-1233 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >96%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           1047..1994
FT                 /product="Crack-17_AAe_1p"
FT                 /translation="MYCFSEAHYRCRNIMGKAIRRIKERIYFCSTKCSCLY
FT                 QKIVELQNNKSLLLESLATELKGTVSEIVSHELKNFRYDIKQITSAIERSQ
FT                 EFLSSKFDAIVHDFYELKNENETLKQELVKMKEIQQTLSTTVHNLEHQTDK
FT                 SNRDARCNNAVILGVPFNPDDNVYEVVHKVFAGFGANIEPDSITSVSRLSS
FT                 KSLAPIRVVFRSQADREAVFCKSKEHGKLLSSSIDPKFVINGKSTNVTIRN
FT                 ELTPLAMGLLNEMKGYKDKLEIKYVWSSRGGNVLVKKCENSKLEIIKTRND
FT                 LLNIVDRYSEGRNIMVNVHSAPKP"
FT   CDS           1972..4929
FT                 /product="Crack-17_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFIQLQNHKPFLHIYCFFFCVTLCLTMANTINLYHDN
FT                 VDDFNSNFSMNNQNFICIAQWNVRGLNNMQKFDDILLFLDNLHVPIDILIL
FT                 GETWLKADNCSLFQIPNYNSVFSCRESSSGGLVMYIRSGLSFNVVKKINID
FT                 GMHSIHSEIKINRQVYDVVGVYRPPSFDFMKFHDELENLFSSFGSRPFYLV
FT                 GDVNIPMNMTNNNVVLRYKSLLESYDSICSNTCITRPASKNTLDHFVCKKE
FT                 ELSKVRNDTIFSDVSDHLIVVSSVKIDSSRECVLLTRRIINKRKLNEMFTN
FT                 ALNNFTCCEDINESIETLTTSYQQILQECTKLKSENVNIKGKHCPWLDLYV
FT                 WQWIKLKNKYLKKVKSNPFDNHLKEMFQYISKKTDIAKKRCKHNYFERLLS
FT                 DTCHAKLWKNLNEIMGRKKQSVKIELNYEGLRTSNNEEICEIFNNYFSNIG
FT                 ENLAKSIKRNNRNPMTTVARIEQTIFLKPTNIREVTTVIHELDVKKSCGPD
FT                 NFPSSIIKSNENKFAEIFSHLFNQMLNQGTYPKCLKVARVTPVFKSGDATD
FT                 PCNYRPISTLSVFSKIFEKLLVTRLLNFLNKHNILYKYQYGFRKGCNTSTA
FT                 IVELVNFLIEGIDKKCTIGGLFIDLKKAFDTLNHQILLEKLESYGIRGLAY
FT                 DIIHSYLNDRKQFVAVQNAHSSTRFIKVGVPQGSNIGPLLFLIYINDLGKL
FT                 PLKGIPKLFADDTALFYPSVSTSSIINCINDDLQLLKRFFDSNLLSLNLSK
FT                 TKYMLFHSPRKKILPHVNPKISNTEVEEVSSYKYLGLRLDPILSWREHIES
FT                 TTRKVSSLCGLMYRVRKFVPRNALLSYYYGCIHSHLQYLIIVWGHASKSNL
FT                 HKIQVLQNRCLKIVYNLPRLHSTVQLYANTSHSILPLRGLCKLQTCLFMFD
FT                 KLKNPDFHCNLTFSTSSHVHNTRYASNILRSRASTCLGQMRITFYGPSVYN
FT                 VVPEHLKTINNRILFKTKLKHHFKSNINEFL"
XX
SQ   Sequence 5261 BP; 1731 A; 819 C; 947 G; 1763 T; 1 other;
     caacactgtt gtatagttga tacttgtctt actgttaaga ttttttattt tgagtttaaa        60
     gagtgtaaat cacgtaaaaa atccaagtaa tattgtatat tgatagtaaa tagtaccatt       120
     tccatgtttt taaaaacagt agtatgaata ttgtgcttca tttatgttta taagccaaac       180
     attttgcggc attcatagtg ctattgagag gatcatatct gtgttattgg tgggctgctg       240
     aatgttgctg ctgactgctg ctgttgttgt tactgctggt ggttctggtg ttttttttta       300
     ttcaagcgat aactataagt ataatcgacc ctgatttgtt gcttattatc tcaaaccgtg       360
     cacacaatta ggttctggtt tactacggct attgcgaatt gcatgattga gtagttcagt       420
     actggattgg cagatttagt gaaattagag cgaacgggcg tcgtacacaa tcttgccgtt       480
     ggttcgtgct tggtgtatgg gtgctgaagt agctctgtga gtagcacttt gcgtggttct       540
     gtcgatacta ccgagacaaa aacttttttg cgaatttgta tgcaagtttg ttgagtttcg       600
     gtgggtgatg gatttagtat tgattgagta aataggcgtc attcaaagct gggcgatact       660
     tgtttcggtc attatcattc aatttttgtt tccataaacg gagtaacaat ggcaaaaaag       720
     cagtcttatg gcacgttcta gcttacaaaa ccagttgtga tatwttattt atattctaaa       780
     ttatttattt aatcgttatt tatatatact tgtagtacaa tatttattgt ctcactgttt       840
     ttgtactcat tttttttatt ttaattttat tagcagtata gctttttgtt tgtagtactt       900
     acaggtgagt taagcgaatt taatccaaca tagttttttt tttagattgg tgtgttgtta       960
     taatttggtg aatatgaacg ataaacaaag tgtttgtgtt ggaatgtaat gaagtagaga      1020
     aagatgtgag taaaattatt acctgtatgt attgcttctc ggaagcgcat tacagatgtc      1080
     gaaacattat gggaaaagcg atccgacgca ttaaagagag gatttacttt tgctctacca      1140
     agtgctcttg tctctatcaa aagattgttg agttacaaaa taacaaatca ttattattgg      1200
     aatcactggc gactgagctt aagggaacag tttctgagat tgtctcccat gaactgaaga      1260
     attttaggta tgatataaaa caaattacta gcgcgattga aagatctcaa gagtttctct      1320
     catccaaatt cgatgcaatt gtacatgact tctatgagtt gaaaaatgaa aacgaaactt      1380
     tgaagcagga actagttaaa atgaaagaaa tacaacaaac cttgtctacc acagttcata      1440
     accttgagca tcaaaccgat aaaagtaatc gagatgcacg ctgcaacaat gcagtaattt      1500
     tgggtgttcc ttttaatcca gatgataatg tttatgaagt tgtgcataaa gtttttgctg      1560
     gttttggtgc aaacattgag cctgattcaa ttacgtcagt ctcaagactg tcatcaaaga      1620
     gtcttgctcc tattcgtgtg gtttttagga gtcaagcaga tagagaagct gttttttgta      1680
     agtcgaagga acatgggaaa ctgttatcat cctcaatcga tccaaaattt gtgattaacg      1740
     gaaaatcgac aaatgtaaca atccgaaatg aattgacacc gttagcgatg ggacttttga      1800
     atgagatgaa aggatacaag gacaaattgg aaattaaata tgtttggtct agtcgaggag      1860
     ggaatgtctt agtaaaaaaa tgtgagaatt caaagctgga aattattaaa actagaaatg      1920
     atttgctcaa tattgtggac cgatattcag aaggaagaaa catcatggta aatgttcatt      1980
     cagctccaaa accataaacc ttttttacat atttattgtt tttttttttg tgttacttta      2040
     tgtttaacaa tggctaacac aataaattta tatcacgata atgtcgatga ttttaactca      2100
     aatttttcaa tgaataatca aaattttatt tgtatagcac agtggaatgt cagaggattg      2160
     aacaacatgc aaaaatttga tgacatacta ttatttctag ataatttaca tgttcctatt      2220
     gatattttaa ttttagggga aacatggctc aaagcagata attgttcatt atttcaaata      2280
     cctaactaca attcagtatt ttcttgtcga gaatcgtctt ctggtggtct tgttatgtat      2340
     attagaagtg gattaagttt taatgtcgtt aaaaaaatta atattgatgg aatgcattcg      2400
     attcatagtg agataaaaat caatagacag gtatatgatg ttgtaggtgt gtatagacct      2460
     ccatcgtttg atttcatgaa gtttcatgac gagcttgaga atttattttc atcttttggt      2520
     tcacgtccct tttatttagt tggagatgtc aacattccaa tgaatatgac gaacaataat      2580
     gttgtcctga gatacaaaag tctactagaa tcgtatgatt ctatttgctc aaacacatgc      2640
     atcactcgtc cagcaagtaa aaacacacta gatcactttg tatgtaaaaa agaagaactt      2700
     tcaaaagtaa gaaatgatac tattttttcg gatgttagtg atcacttaat cgttgtctcg      2760
     tctgtcaaga tagatagctc tagagaatgt gtattactta ccagaagaat tataaacaaa      2820
     agaaaactga atgaaatgtt taccaatgct ttgaacaatt ttacctgttg cgaggacatc      2880
     aatgaatcga ttgaaactct aacaacttct tatcaacaaa ttttacagga atgcacaaaa      2940
     cttaaaagtg aaaacgttaa cattaaaggt aaacactgtc catggcttga tctgtatgtt      3000
     tggcagtgga taaaacttaa gaacaaatac ttgaaaaaag ttaaaagcaa tccgtttgat      3060
     aatcacttga aagaaatgtt tcaatatatt tccaaaaaga ctgatattgc caagaaaagg      3120
     tgtaagcata attattttga gagacttttg agtgacactt gccacgccaa gctttggaaa      3180
     aatttaaatg aaattatggg acgtaaaaaa caatcagtca aaatcgaact taattatgaa      3240
     ggactcagaa cttcgaacaa tgaagaaatt tgtgaaatct tcaataatta tttttcaaat      3300
     attggagaaa atttggcgaa atccatcaaa agaaataata gaaatccaat gacaacagta      3360
     gctcgtatag aacaaaccat tttcttaaaa ccaacaaata tccgcgaggt aacaactgta      3420
     atacatgaac tggacgtgaa aaagagctgc ggaccggaca attttccgtc aagtataatt      3480
     aaatccaatg agaacaaatt tgctgaaatc ttttcacatc tttttaatca aatgctcaat      3540
     caaggaactt atcccaaatg cctcaaagta gcaagagtta caccagtttt taagtctggt      3600
     gatgcaactg atccatgcaa ttatcgaccc atttctacct tatccgtatt cagtaaaata      3660
     tttgaaaaac tgcttgtgac acggcttcta aattttttga acaaacataa tattttgtac      3720
     aaataccaat acggttttcg taaaggatgt aacacttcaa cggctattgt ggaacttgta      3780
     aatttcttga ttgaaggtat tgataaaaaa tgcacaattg ggggcctttt tattgacctt      3840
     aaaaaggcat tcgatacgct gaatcatcag atattattag aaaaattaga aagctatggc      3900
     atacgtggat tagcctatga tattattcat agttatctca atgatagaaa acagtttgta      3960
     gcggtacaaa atgcacatag ttctacgcga ttcatcaaag ttggagtgcc acaaggcagt      4020
     aatattggtc ctcttttatt cttaatatac attaatgatc taggtaaatt accacttaaa      4080
     ggaatcccta aattgttcgc tgatgataca gcgttgttct atccgagcgt tagcacatcg      4140
     tcaattatta attgcataaa tgatgactta cagctgctca aaagattttt tgattcaaat      4200
     ttgctctcac ttaatctgtc taagaccaaa tacatgttat ttcactcgcc taggaaaaaa      4260
     attttaccac acgtcaatcc aaaaatctca aacacagaag ttgaggaagt gtcaagctac      4320
     aagtaccttg gactgagatt agatcctata ctttcatgga gggaacacat agaatctact      4380
     acaaggaagg tctcttccct ttgcgggttg atgtaccgtg taaggaagtt tgtgccgagg      4440
     aatgcactcc taagttacta ttatggatgt attcactctc atttgcagta cttaatcatc      4500
     gtttggggtc atgcaagtaa atccaatttg cataaaatac aagtgctaca gaacagatgt      4560
     ttgaaaattg tttataattt accaaggcta cattctactg tacaattata tgccaataca      4620
     tcacacagta ttttgccact gcgtggtttg tgcaagctgc aaacatgttt gtttatgttt      4680
     gataagctta aaaatccaga ttttcattgt aaccttacat tttcaaccag tagtcatgta      4740
     cataatactc gttacgcaag caacatattg cgctcaagag catccacttg tttgggtcaa      4800
     atgcgaatca ctttttatgg tccgtctgtg tataacgtcg tacccgaaca cttaaaaaca      4860
     ataaacaatc gtatactatt caaaaccaaa ttaaaacatc acttcaaatc aaatatcaac      4920
     gaatttttat aaaatgctgc cagaactgtt atttgatttg ttgtcaattt tctttattgc      4980
     tcatcttgtt ttagatttac actctagtta aattatctgt ttcatttatt tatcaactaa      5040
     ttagcttttg tcgttcaagg gatcccttca aaggaatact attccactgg gaaatcccat      5100
     agtcatattt gttgaacgtc gttcttcgct ctcaccttag cattgaaagt ttacttttta      5160
     aattatgttt attatgtata aaaagatgcg tccactacca gggggctcat actgagcttt      5220
     ttggtgtggg ggttgagtgg agggtcgcat taaaaaaaaa a                          5261
//
ID   Crack-18_AAe repbase;    DNA;    INV; 4135 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-18_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4135
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1234-1234 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >95%
CC   identity.
CC   Closely related to Crack elements in Culex pipiens (Crack-1_CP
CC   to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           60..860
FT                 /product="Crack-18_AAe_1p"
FT                 /translation="MMQNNNNSMVSSLASEMRATISASVAKEMRTVTTEVR
FT                 QIIYAIEKSQEFLSXKFDDIVIEFNRLKCENDRLVAEIEKLKKSQSDLREM
FT                 VYTLECNADKADKVALDNNAILWGVPTATEENVPRLVEKLLVSVGLQGNSD
FT                 HIKSAERLFSNGRXXTMVPIRIVFNNKKSKEMVFNKKKQYGKLYSTVIDDK
FT                 LKVNGKATSVTLRDELSPLSLDLLKKLRESQEIMGVRYVWAGRGGTILVKR
FT                 DNDSKPELVKNRVDLDRVMCHFVRSG"
FT   CDS           911..3808
FT                 /product="Crack-18_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDLTTIMIQNKYHESLFDFNQKCENVVENSFNVVQWN
FT                 VRGINDFEKFDELVYFVTECRMNIDVVVVGETWIKKENSNIYNLPGYRAVF
FT                 SCRESSSGGLAVFIKNSIDYKLINIKSIEGLHYVHLEVKPNGQFYNVIGIY
FT                 RPPSFDYAEFQNLMEGWLTHASPSKPILIVGDVNVPINLQHNNVVTRYKNL
FT                 LESYGYVCTNTFATRPASNNILDHFICPIDLAAKLQNHTIFNDLSDHLPIF
FT                 SSIPLSNEKKQQELSMSIVDRATLQHKFSLFLTDFQVTEDVEASLKSLIET
FT                 HNRLLTECTRSVTKTVRVKNDHCPWMTYSLWRLMQIKNNYLAKSKKDPNNA
FT                 QVKEMLTHVSKKVKAAKTRCKREYYENILKSSNHSNVWKKMNQIFGRSKVR
FT                 EQIKLKIDGETVHSDRDVVEIFNTYFANIGHNLANKLPKNNFDVLKHVKTV
FT                 NNSIFLRPTNVSEVSILISHLDVKKSRGHDNISADLIKANMGPFSEIIAKL
FT                 FNKIIATGVYPNVLKIAKVTPVFKTGDAYDPSNYRPISTLTVLNKIFEKLL
FT                 TSRLVNFLTANNVFYKFQYGFREGCGTSTAIIELLDDLYCEIDRKKIVGGL
FT                 FIDLKKAFDTIDHGILLKKLDRYGIRGVANDLIKSYLSDRKQYVALNGTRS
FT                 SLCSIDIGVPQGSNIGPLLFLMFVNDLGNLKLRGTPRLFADDTALFYPHSN
FT                 ISSIVEDIESDLVSLLHYFNGNHLSLNLTKTKYMIFHSSRKKILQHSDPYV
FT                 ENLQIEKVFSFKYLGLYLDSTLSWDAHIKHVSNKVSSLCGIMKRVRSFVPN
FT                 EALLRFYYACIHSIIQYLIIVWGHAAKSKLKKVQTLQNRCVKVIFNLPPLY
FT                 STVSLYTRLQHTIIPILGLRDTQTIMFVHNILCNRSFHHNIVFPTRVTIQH
FT                 TRQANELLRSNACTNMGLVRIKNYGPLKYNGLPSDLKSISNIILFKSKLKQ
FT                 YILRNVNEYIL"
XX
SQ   Sequence 4135 BP; 1338 A; 724 C; 767 G; 1300 T; 6 other;
     tgakaagtwc tgattacttc tgctcctctc aatgttctgc aatctaccaa cggattgtta        60
     tgatgcaaaa caataataat tccatggtgt cttctttagc ttcagaaatg agagcaacga       120
     tctcagcctc cgttgctaag gaaatgagaa cagttacaac tgaggtcaga cagattattt       180
     atgctatcga aaaatcccag gaatttttgt ccwcaaagtt tgatgacatt gtcattgaat       240
     ttaatcgtct caaatgtgag aacgatagat tagtggccga aatagaaaaa ttgaagaaat       300
     cgcaatctga tttacgggaa atggtttaca cacttgaatg taatgctgac aaggctgata       360
     aggtagcgct ggataataat gcgatattgt ggggtgttcc aacagcgaca gaagaaaatg       420
     tacccagatt agttgaaaag ctacttgtct ccgttgggct gcaagggaac agtgatcata       480
     tcaaatctgc tgagcgactg tttagtaatg gacgtaktkk taccatggtc cctatcagga       540
     ttgtgttcaa caacaaaaaa tcaaaagaga tggtcttcaa taaaaagaag caatatggga       600
     aattgtattc taccgtgatt gatgataaat tgaaggttaa tggaaaagct acaagcgtga       660
     cgttgcgcga tgagttgtct ccattatcct tggatttgct gaaaaagctt agagaatccc       720
     aagaaattat gggtgttcgg tacgtttggg caggtagagg tggcaccata ttggttaaaa       780
     gagataatga tagcaaacca gaattggtaa agaatagagt ggatcttgat cgcgttatgt       840
     gtcactttgt acgcagtggt taatgccaat gcggtagtat atttcaagtt ttttctatat       900
     aactttaaaa atggatttaa caactataat gattcaaaac aagtaccatg aaagtttgtt       960
     tgatttcaat caaaaatgtg aaaacgttgt tgaaaatagc ttcaatgtag tccagtggaa      1020
     tgttagaggg ataaacgatt tcgaaaagtt tgatgaattg gtttattttg taactgaatg      1080
     tagaatgaac attgatgttg ttgttgttgg cgagacttgg attaagaaag aaaacagtaa      1140
     tatttataat cttcctggat atcgtgctgt attttcttgc cgcgaaagct cctctggtgg      1200
     gctagcggtt ttcataaaga actctataga ttataaattg ataaatatta aatctattga      1260
     aggattgcat tacgttcatc tagaagtaaa acctaatggc caattttata atgttatcgg      1320
     catctaccgt ccaccttcgt ttgactacgc tgagttccag aatcttatgg aaggctggct      1380
     aacacacgct tctccgtcaa aaccgattct tatagttggt gacgtgaatg tacccattaa      1440
     tttacagcac aataatgtgg taactaggta caaaaaccta ttagaatcct acggatacgt      1500
     gtgcaccaat acttttgcaa ctcgtcctgc cagcaataat atattagatc attttatttg      1560
     tcccattgat cttgctgcaa agctccaaaa tcatactata tttaacgatt taagtgacca      1620
     tcttcctatt ttttcgtcca tacctctaag taatgaaaag aaacaacaag aattgagtat      1680
     gagtatagta gatcgtgcta cattgcaaca caaattttcc ctttttttga ctgacttcca      1740
     agtcaccgaa gatgttgaag cttcgttgaa atctcttatc gaaacccaca atagactttt      1800
     aaccgagtgc acgagatctg tcacaaaaac ggtccgagtt aaaaacgatc attgtccatg      1860
     gatgacttac agtctctggc gattgatgca aatcaaaaac aattaccttg cgaaatccaa      1920
     aaaggatccc aataacgctc aggtcaagga aatgttgaca cacgtttcaa aaaaagttaa      1980
     agctgcaaaa actcgctgta aacgggaata ttatgaaaat attcttaaga gttctaatca      2040
     ctccaatgtg tggaaaaaaa tgaatcaaat atttggtcgt tcaaaagtca gagaacaaat      2100
     caaattaaaa attgacggtg aaactgtaca ctctgataga gatgttgttg aaatttttaa      2160
     cacctacttt gctaacatcg gacacaatct ggctaataaa cttcctaaaa ataatttcga      2220
     tgttttgaaa catgttaaaa ctgtcaataa ctctatattt ctgcgtccca ctaacgtaag      2280
     tgaagtaagt atcctaataa gtcacctaga tgttaaaaaa agtagaggac acgataatat      2340
     ttccgctgat ctgatcaaag ctaatatggg ccctttctca gagattattg caaaactttt      2400
     taataaaata atagcaaccg gtgtgtaccc aaatgtttta aaaattgcta aagtaacgcc      2460
     agttttcaag actggtgacg cttacgaccc ttcaaactat cggccaatct caaccctcac      2520
     agttttgaac aaaatcttcg aaaaactttt aacgagtcgg cttgtaaact ttttgaccgc      2580
     taacaacgtt ttttataaat tccagtatgg attccgggaa ggttgtggta catcaactgc      2640
     aatcatcgag cttttagatg atctgtattg cgaaatagac cgcaaaaaga ttgtgggggg      2700
     cttattcatt gatttgaaga aggctttcga cactatcgat cacggcattt tacttaaaaa      2760
     acttgatcga tatggaataa gaggagtggc caatgaccta ataaaaagtt atctgtcaga      2820
     tcgtaagcag tacgtagcgc ttaatggtac ccgtagtagt ttatgctcta ttgatatagg      2880
     agtgccacag gggagcaaca ttggccctct attatttttg atgttcgtaa atgacttggg      2940
     taatctgaaa ctacgtggaa caccaaggct ctttgcagac gatacggcat tgttctatcc      3000
     tcactccaat atatcatcaa tagttgaaga tattgaatca gaccttgtaa gcctcttgca      3060
     ttattttaac ggcaatcatc tctctttgaa cctcacaaag actaaatata tgatcttcca      3120
     ctcgtctcgg aaaaaaatac tgcaacactc tgatccgtac gttgaaaatt tacaaattga      3180
     aaaagtgttt tctttcaaat atttagggtt gtacttagat tcgacccttt cctgggacgc      3240
     acatataaag catgtttcaa ataaagtctc ctcgttatgc ggtattatga aaagagttcg      3300
     ctcatttgta cccaatgaag cacttctgcg attttattat gcgtgtatcc actctataat      3360
     tcaatattta attatcgttt ggggtcatgc cgcaaaatcg aaacttaaaa aagttcaaac      3420
     actgcagaac agatgtgtaa aagtaatctt taatttacca ccattatatt cgacagtttc      3480
     actttatact agactacagc atacaattat acccattctt ggtttgcggg atacacaaac      3540
     tatcatgttt gtacataata tcttgtgcaa tcgtagtttt caccacaata ttgtttttcc      3600
     gaccagagtt accatacaac atactagaca agcaaatgaa ctattgagaa gcaatgcatg      3660
     cacgaacatg ggtcttgtgc gtatcaaaaa ttacgggcca ttgaagtata acggacttcc      3720
     ttccgactta aagtcaattt caaatatcat actatttaaa agcaagttaa aacagtacat      3780
     attgaggaac gtaaatgaat atattctttg atcgtgttaa ccttttgttt atgtaggttt      3840
     tttctggctt ctgctggttt ttccctgcat gtttagtttt tagtttagtt tattcgttaa      3900
     agccacaaaa cctatcacta gttaacttat ttcggattta aatttagttg ttcattcagt      3960
     aaatcccttc aaaggaacaa agttccactg ggatttcatt ttgctattgt tgtttttcct      4020
     tatctccgcg ttttgtaatt aattattagt ttttctattt ttgtaagtgt ccattaccag      4080
     ggagctcagt gtgagctttt tggtatgggg gtcagtggag ggtattaaaa aaaaa           4135
//
ID   Crack-19_AAe repbase;    DNA;    INV; 4320 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-19_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4320
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1235-1235 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1037
FT                 /product="Crack-19_AAe_1p"
FT                 /translation="MDELLATMKGLQVSMDKLNQKCDENGVNQKKTDDAVK
FT                 KLSASICALTKSQSDIKDSVEEVKSSQTFIAAQYDDIKSLHEDMKREFAGC
FT                 STKVSEHDGQILALNNEVIEMKKRLRMAEQNGLKNEIIINGIPKEVSLAEA
FT                 TIVTKVAAAVGVQLFSTDIERTHRSRNGMILVDFSNLKVRNDILRARKGKS
FT                 IYLDEIDFGNAVLPGSSRSSPTNKRXHTKVFINENLTRETRSIFREAKSLR
FT                 GSHGYKYVWCNNGNIYCKKDDSADVYIIDSTEDLKRLRSSPRKA"
FT   CDS           1138..4026
FT                 /product="Crack-19_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNTNDDDFISNVRLGDNLDIAYTHVNETFTNTKINLL
FT                 YMNINSIRNKLADLLVYISNFGSIVHIICITEIRLNPDETYICNIPNYDVV
FT                 CCPRSNRSGGGACMFIHQSMQFDVTKNEEFLEGSCIVVSLREPKLSIAVIY
FT                 RPPHASLNDSIHYLDSLLESAGKLVCVGDFNINLLSTNSSNYVSMVESNGF
FT                 SFLNKIDHNSATHGNVPTGTIIDHSFTNLYSQKFCMCIDNISFTDHKALLI
FT                 SFGSNXRLSNNVKTTNIKKYNYGDISHDLAQFVVSADSLDNLNQLIEDCMS
FT                 KNSYVIHSHRKYRPKAPWIDEIVLREIRHRDQLYQRMVQWPQNSTIRNNFK
FT                 KQKNXVTRLIKQRQKLYYQNKIALNRCNIRKVWSILNEIVFRKPSSNTTIS
FT                 KILINDRILTDKSEICEAFNYYFKNIPNELFSNLTQTFNNTPRNFTLDRSI
FT                 QNSIVMLPASNNEISNCIRNLSNSSAVGVDGIPSKILKQNEEIIAPKLTCL
FT                 INQALDEGVFPNCLKSARIVPIYKSGHKTYVGNYRPIAILPTLSKPFERII
FT                 HRRLCNFFDQHNIISAHQYGFRPNSNTTSATVNLVNEIQLNLDQRKLCSAI
FT                 FIDVSKAFDCVPHTILLQKLQNYGIRNKAFALLESYLKNRVQCVRIGNNTS
FT                 TYLTVDSGVPQGSILGPLLFNVFINDIFDLPLRGKLQLYADDAALVYNSSS
FT                 VESLYQDMQHDLNLIHLWFFHNGLTINASKTKYIVFSSTDRLNVLPDLWLG
FT                 EEKLERVFSLTYLGLIIQQNMKWNLHIEQTHKKLNKFLGILRQSSYILPIK
FT                 EKKNLFYAHVHSQICYLSVIWQNAPNYVISKISTTLNKFMRTIFWEDYLDP
FT                 SIRTADLYKNNKIMNFNQIKYFESALFVYKVKNNIIKHTLDFQSLSELHRF
FT                 NTRNMNNIRMITPRTNYIRYGCIYPAILNFNDLPLNLKNIPSIYTFKKALK
FT                 MYVLEXIV"
XX
SQ   Sequence 4320 BP; 1513 A; 795 C; 770 G; 1238 T; 4 other;
     agtgctcagt ctgcaacact gaaatcaaag tagacgataa acatgtgaaa tgtgtctatt        60
     gcagcaatgc gttgcacgtg aaatgtgcgg gtctatctga atcgcgctat aacaaaattc       120
     agaaaaacca ttgctattac tgctctggtc aatgtgagac ctcacatgtg aacagcaaaa       180
     agatggacga actacttgca accatgaaag gcctacaagt ttccatggac aaacttaatc       240
     aaaagtgtga cgaaaacggt gtgaaccaga aaaagacgga tgatgctgtg aaaaagttga       300
     gtgcgtccat atgtgcactc acaaaatccc agagtgatat caaggattcg gttgaagagg       360
     tgaaatcgtc ccaaacattc atcgctgcgc agtatgacga catcaagtcg ttacacgagg       420
     acatgaagag ggaatttgcg ggatgctcga cgaaagtgag tgagcatgac ggccagattc       480
     tagcgctgaa caacgaagtc atcgagatga agaagcggct acgtatggct gaacaaaatg       540
     ggttaaaaaa cgaaatcata ataaacggta tcccaaagga ggtatctctt gccgaggcga       600
     ctatcgtcac aaaagtagct gcagcagttg gggtacagtt gttttccaca gacatcgaaa       660
     gaactcaccg cagcagaaat ggaatgattt tggtcgactt cagcaatttg aaagtgcgga       720
     atgacatact acgtgcacgc aagggtaaat cgatatacct ggacgaaatc gactttggca       780
     atgcagtgct acccggcagc tctaggtcct cgcctaccaa caagcgtcmt catactaaag       840
     ttttcataaa tgagaacttg accagagaaa cccgttcaat ttttcgagaa gccaaatctc       900
     tccgtgggtc ccacgggtat aagtatgtgt ggtgcaataa cgggaacatc tactgcaaga       960
     aagatgactc tgcggatgtc tatatcattg attccactga agacctcaag agattgcgct      1020
     catctcccag aaaagcttga cctctcatac tctctgttgt tgcttgctgt tggtgttgtt      1080
     ggaggctgtt gaggatggtg ttggtgcgtt gctgtccata caaatatatc cttcacaatg      1140
     aacacaaacg atgatgactt cattagcaat gtacgattag gtgataattt ggatatagct      1200
     tacacacatg taaatgaaac ttttaccaat actaaaatca acttattgta tatgaacata      1260
     aactcaatac ggaacaaact agcagattta ttggtttaca tttctaattt tggctcaatc      1320
     gttcatataa tatgcataac tgaaataaga ctgaacccgg acgaaactta catctgcaac      1380
     atacccaatt atgacgttgt ttgttgtcca agatctaata gatctggtgg aggtgcctgt      1440
     atgttcattc atcagtcaat gcagttcgat gtgacgaaaa atgaggaatt tttggagggt      1500
     agctgtattg tggtatcact aagagagcct aaactgagca ttgcagttat atatcggcct      1560
     ccacatgcta gtttaaacga cagtatacac tacttggatt ctcttctgga atctgcagga      1620
     aagttggtat gcgtaggtga cttcaatatc aaccttctta gtacaaattc tagcaactat      1680
     gtatcgatgg tagagtcaaa cgggttttcg tttttaaaca aaattgacca caacagcgca      1740
     acgcatggta atgtgcctac aggaacaata atagatcatt cattcaccaa tttatattcg      1800
     cagaagttct gtatgtgtat tgacaacatt agcttcacag atcataaagc tctcttaatt      1860
     agtttcggct caaacamtcg tttatccaat aatgtaaaga ctaccaatat caagaagtac      1920
     aactatggag acatttctca cgatctagcg caatttgtag tatctgcaga tagtttggat      1980
     aatttaaacc aactgataga agattgcatg tcaaaaaatt catatgtaat ccattcccat      2040
     agaaaatatc gacccaaagc accatggata gatgaaatag ttttaagaga aatacgacac      2100
     agggatcaat tataccaaag aatggttcaa tggccacaaa actccactat ccgtaataac      2160
     tttaaaaaac agaaaaactw tgtgactcga ctcattaagc aaagacagaa gctttactat      2220
     caaaataaaa tagcactgaa tcgttgcaac ataagaaagg tgtggagcat tttgaatgaa      2280
     attgtatttc gtaaaccatc tagtaacaca actatctcaa aaatacttat aaacgatagg      2340
     atattgacag ataaatcaga aatatgtgaa gcgtttaact attatttcaa aaacatacct      2400
     aatgaactgt tttcaaattt gacccaaaca ttcaacaata cgccccgaaa tttcacttta      2460
     gatagatcta ttcaaaattc tattgtaatg ctgcccgctt cgaataatga gataagtaat      2520
     tgcattcgta acctcagtaa ctcaagtgca gtaggagtgg atggtattcc atcaaaaatt      2580
     ctaaaacaaa atgaggaaat tattgctcct aaattaacct gcttaatcaa ccaagccctc      2640
     gacgaaggtg tttttccgaa ttgtcttaaa tcagcaagaa tagtaccaat atacaaaagc      2700
     ggccataaaa cgtatgttgg aaattataga ccaatagcta tcctgccaac tttgtccaaa      2760
     ccgtttgaaa gaatcattca tcggagactt tgtaattttt ttgatcaaca caacataatc      2820
     agtgcacacc aatacggatt tcgcccaaat tcaaatacta ctagcgcaac tgtaaattta      2880
     gttaatgaaa ttcaattgaa cctagaccag cgcaaattat gctctgcaat atttatagac      2940
     gtgtcaaaag cattcgactg tgttcctcac actatattac tacaaaaact tcaaaactat      3000
     ggtataagaa ataaggcttt tgcgctgctt gaatcgtatt taaaaaatag agtccaatgt      3060
     gtaagaatag gtaacaacac tagtacatat ttaactgttg attctggtgt accacagggc      3120
     tcgatattag gtccactgct tttcaatgtt tttatcaatg acatttttga tttgcctttg      3180
     aggggaaaac tccaactcta tgccgatgat gctgccttag tttacaactc aagtagtgta      3240
     gaatctctat accaagatat gcagcatgac ttaaacttaa ttcatctctg gttttttcat      3300
     aatggattga cgattaatgc atctaaaact aagtatattg tattctccag taccgatcgc      3360
     ttaaacgttt tacctgactt gtggttaggt gaagagaaac tagaaagagt tttttctcta      3420
     acttacttag gactcataat tcagcaaaat atgaaatgga acttacacat tgaacagact      3480
     cataagaagc taaacaaatt tctcggtata ctccgacaga gtagttatat tttacccatt      3540
     aaagaaaaaa agaatctgtt ttacgctcat gtccactcac agatttgtta cttaagtgta      3600
     atatggcaaa acgcacccaa ttacgttatt agtaaaattt ctacaacatt aaacaaattc      3660
     atgagaacta tcttttggga agactattta gacccgagta ttagaactgc agatctatac      3720
     aaaaacaaca aaataatgaa cttcaatcaa attaaatatt ttgagtcggc tttgtttgtg      3780
     tataaagtta aaaataatat tattaaacat actttagatt ttcaatcttt gagtgagcta      3840
     caccgattca atactagaaa catgaacaat attagaatga taacaccaag gactaactat      3900
     atcagatacg gttgtattta cccggctata ttgaacttca atgatttacc tctgaatttg      3960
     aaaaacattc cttcgattta tacattcaaa aaagcactga agatgtacgt attggaamac      4020
     attgtttaaa acttatatat tattagaaaa atacttagaa tactctcact ggcacgaaat      4080
     actatcgata taagacctcc caatcagtcc ttagactgtc tgaggtctac cataacttta      4140
     tacgttattc gttaggggaa gaaaacaaga ttatcgaaac attgtaaatt actattgtaa      4200
     aaattttaaa ggggttttta cgcctgagat tgaaccatat aaatgatgaa aaatgtttcc      4260
     atcttggctt ttccccttgt tgaaaaaaaa aaataaaata aataaaataa aaaaataaaa      4320
//
ID   Crack-1_AAe repbase;    DNA;    INV; 4787 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4787
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1217-1217 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           376..1425
FT                 /product="Crack-1_AAe_1p"
FT                 /translation="MSDDTIVCVTCKKEEKDPKKVIECAQCHKCEHFKCRN
FT                 TFGNAIRKLKGKDFFCTLECQEFFQRASGNSSTDPDILKELHTVLMEVRAT
FT                 RSEVQDMKSTICEMEKFQNFLSSKLDTLLNEVKALKVEHAAMKAEADQIRK
FT                 KHHQLSYTVDELEMDVERLSRMTLSRNMIVLGIPPRKDENVKEIIGKVSSA
FT                 IGYEIPDGAILEAKRLTSNGEKLRNTEPAPIKVVFVSEQYKEELFAKKRSF
FT                 GPLLSAAVDLPLPDGSRKIVLRDELTPRGMELYKQVREIQDCLNYKFVWPG
FT                 RNGVILAKKSENSKTEFIRSRSDVAGLQRTGAKRNLDTSTTNSSTQSSPVS
FT                 EPAAKRR"
FT   CDS           1467..4352
FT                 /product="Crack-1_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFSNYFYDCSESWLKNKYCAVSNTSLKIIQLNIRGMN
FT                 ELSKFDNVRELLDRYGERVDIIVLGETWLKDDKAVLYSIKGYKGYFSCRDS
FT                 SHGGLALFVRQDMHYDLCSNRNVDGFHHIHLQLQTKGRHLQIHAVYRPPSF
FT                 DARRFFSEIETMLSSGSSNHDRLILGDMNVPVNIVTNNIALEYIRLLESYH
FT                 AFLTNTMVTRKASGNILDHVVCSGQIVDNIINETVYNDLSDHCFIVTNVEL
FT                 RHEVSKQIFTKNVIDHARLNELFAQNSTQIPPDCDANGKLEHVIRTYNSLL
FT                 TQCTKKVTLKTKLKGHCPWMTYDLIRLIRIKENALGRYHRNPDDVAIKETL
FT                 QHASKLVQRKKAQCKSDYYYKQLERADARTAWRFVNSNLGKQPNINKISAI
FT                 SVNDRLVSDNSHICSAFNDFFCSVGSSLAAKINSDRNISKFGTLVPQRNSL
FT                 YINPTTISEITIMIHNLDSKKSAGPDNIPANFIKTHHSFFARLLTDVFNEI
FT                 ISTGQYPDCLKIARVVPIFKSGNNKDLNNYRPVSCLSIMDKILEKLLATRI
FT                 ISFAQRFNLIFDHQYGFRSGSSTLTACSDLVDNIYDSLDRRRLSAALFIDL
FT                 KKAFDTIDHHLLIEKLEIMGFRGVTKSLLSSYLTNRRQFVAIAGYKSPPGL
FT                 MKTGVPQGSNLGPILFLLFINDLSKLPLNGKLRLFADDTSLLYEANSIENL
FT                 QRQIKEDIILLQDFFSANLLSLNLSKTKYMIFHSPRKRLPARNILEVRGCV
FT                 IEEVAEYSFLGLLLDSTMKWNAHVNMLKNKLSSICGIFRRIAECIPKKWLM
FT                 KLYHALFHSRLQYLVTCWGSASKSTLKEVQVLQNRCLKIIHGFPVLYPTIA
FT                 LYTRNTDSILPVKALQSFQMLLHVRKILSDPSTHHNTHLRRIARNRESRYE
FT                 GNLSLGRPYTEFGRRRFEYAGSKLFNELPTVCKTSATLNKFKFSLRNHLKE
FT                 NVNSYLR"
XX
SQ   Sequence 4787 BP; 1554 A; 1005 C; 963 G; 1265 T; 0 other;
     gtctggcaac accgaatcga ctagaacggc atcctattag ggctcggaat aaattacaaa        60
     aagtgaagtg aaatcgaaaa attctgaagc tacgacatcg atgaagcagg aatcttaaca       120
     tagataaatc tgctgaaacg ttatacaatc tggtttttcg acgattacgt tctaaaacac       180
     gaatcagttt atcccataat tatcgcttta agtgattcat ggtggtcttt gcacagtttt       240
     gtctttattc ttaacacaac acacacaagc gtgatcgtga aatatttcgt caatctgtct       300
     atcacattct gtcggagttt gcggttggta gcgataaacc agtcagtctg ttatcaccat       360
     cgtaaaatat aaacaatgtc tgacgatacc atcgtctgtg ttacgtgcaa gaaggaagaa       420
     aaagacccta aaaaggtcat agagtgtgca cagtgccaca aatgcgagca tttcaaatgc       480
     cgaaacacat ttggaaatgc aatacgaaag cttaaaggaa aggacttctt ttgtacccta       540
     gaatgccagg agttcttcca aagggcttca gggaattctt cgactgaccc ggatatactc       600
     aaggagctgc atactgttct tatggaggtc agagcaaccc gctcggaggt gcaggacatg       660
     aagagcacga tttgcgaaat ggagaaattt cagaatttcc tctccagcaa gctcgacact       720
     cttctgaacg aggtcaaggc acttaaagtg gaacatgcag caatgaaggc agaagctgat       780
     caaatacgga aaaaacatca tcaattaagc tacacggtgg atgaactgga gatggatgtg       840
     gaacggttga gcaggatgac cttgtcgcga aatatgatag tccttggaat acccccaaga       900
     aaggatgaaa acgtcaagga aatcatcgga aaagtgtcgt ccgcgatcgg ctatgaaatc       960
     ccggatggag caatactgga ggccaaacgt ctgacatcga atggagaaaa actacggaac      1020
     accgaacccg caccgataaa agtagtgttt gtgagtgagc agtacaaaga ggagttattt      1080
     gccaaaaagc gttccttcgg tccgctgctg tctgctgctg ttgatctacc gttgcctgat      1140
     ggttcacgta aaatcgtttt acgcgacgaa ctcacaccac gtggaatgga actctacaaa      1200
     caagtacgtg agatacaaga ctgtttaaac tacaagtttg tgtggcccgg cagaaacggt      1260
     gtaatattgg caaaaaaatc cgaaaactca aaaacagagt tcattcgctc tcgctcagac      1320
     gttgcgggat tacagcggac tggtgcgaaa cgcaatttgg atacatccac gaccaactca      1380
     tctacacagt catcgcctgt gtcggaaccg gcggcgaagc gacgttaagc aggcccactg      1440
     cggacacact atgaagattt atttcaatgt tttcaaatta tttttatgat tgttctgaat      1500
     cgtggttgaa aaataaatac tgtgcagtat caaatacgtc tttgaaaatc attcagttaa      1560
     acatcagagg gatgaatgaa ttgtccaagt ttgacaatgt aagagaattg ttagatcgtt      1620
     atggggaacg ggtggatata atcgttcttg gcgaaacatg gttgaaagat gacaaggctg      1680
     tattatactc aataaagggt tataaaggct atttttcatg cagagatagt tcgcatgggg      1740
     gattggcgtt atttgttcga caagatatgc actatgatct ttgttcgaac agaaatgtgg      1800
     atggctttca tcacatccat ctgcaacttc aaaccaaggg aagacatctt caaatacacg      1860
     cagtatacag accaccaagt tttgatgcaa ggcgcttctt ctcggaaata gaaactatgt      1920
     tatcgtcagg tagtagtaat catgaccgtt tgatacttgg tgatatgaac gttcctgtaa      1980
     acattgtcac aaataacatt gcgttagaat acatccggct tttggaatca taccatgcat      2040
     ttttgacgaa caccatggtt accagaaagg caagtggcaa cattctggac catgttgtat      2100
     gttcaggcca gattgtagat aacataataa acgagacagt ttacaatgat ttgagcgatc      2160
     attgcttcat tgtaacaaac gtagaactcc ggcatgaagt cagtaaacaa attttcacga      2220
     aaaatgttat agaccacgca cgtttgaatg agttgtttgc tcaaaacagt acacaaattc      2280
     cgcccgactg tgatgcaaac ggtaaactag agcacgtgat tagaacatat aattctctgt      2340
     taactcaatg cactaagaaa gtgactttga agacaaaact aaaaggccac tgtccttgga      2400
     tgacttacga tctgataaga ctgattcgta taaaagaaaa tgcgttaggc agatatcacc      2460
     gtaaccctga tgatgttgca ataaaagaaa cgcttcagca tgcatcgaaa ctagttcagc      2520
     ggaagaaagc tcaatgtaaa agtgactact actacaagca actggaacgt gctgacgcca      2580
     ggactgcgtg gagattcgtc aactcaaatt taggaaagca gccaaatatc aacaaaatat      2640
     ctgcgatatc tgtgaacgat cgattagttt ccgataacag ccacatctgc agtgctttca      2700
     acgatttttt ctgtagcgta ggatcctcct tggcagccaa aatcaatagt gatcgaaaca      2760
     tcagcaagtt tggtacgctc gttccccaaa gaaattctct atacataaat cccacgacga      2820
     tcagtgaaat tacaatcatg attcataact tggactcaaa aaaatcagct ggccctgaca      2880
     atataccagc caactttatc aaaacccacc attcgttctt cgctcgtttg ctaacggatg      2940
     tgtttaacga aataatatct actggtcagt atcctgattg tcttaaaatt gctcgggtgg      3000
     tgcccatatt caaatcaggc aataacaaag atcttaacaa ctatcgccca gtatcttgtt      3060
     tatccataat ggataaaata ttggagaaac tgctggctac aaggatcatc agctttgcac      3120
     aacgcttcaa tctaatcttc gatcatcaat atggtttccg gagtggatcc agcacactta      3180
     cagcctgtag tgatctcgtt gataacattt acgattcact cgatcgcaga cgactctctg      3240
     ccgcgctttt tattgatctt aaaaaagcat ttgatacaat cgatcatcac ttactaattg      3300
     aaaaattaga aattatggga ttcagaggag ttacaaaatc attattgagc agctacctaa      3360
     caaatcgtcg tcagtttgtc gctatagcag gatataaaag tcctcctgga ttaatgaaaa      3420
     cgggggtgcc acagggtagc aatttaggcc ccattctttt cttgctattt atcaatgatc      3480
     tttctaaact tccactgaat ggtaaactga ggctttttgc cgatgatacg tctttgctgt      3540
     atgaagccaa ctccatcgag aatctgcaaa ggcagatcaa ggaagacatc attctactgc      3600
     aagatttttt cagcgcaaat ctgctgtctc tgaacctcag caaaaccaag tatatgatct      3660
     ttcactctcc tcgtaaacgg cttccagctc gcaatatctt ggaagttcgg ggatgtgtga      3720
     tagaagaagt agcagaatat tcgtttcttg gtcttttgtt ggatagtaca atgaaatgga      3780
     atgcccatgt aaacatgctg aaaaacaaac taagctctat ttgtggaata ttccgaagaa      3840
     tcgccgagtg tatcccaaaa aaatggttga tgaagttgta tcacgcattg ttccactcca      3900
     gactgcaata tctggtgacc tgctgggggt cggccagcaa atctactttg aaagaggttc      3960
     aagtacttca aaatcgatgc ttgaaaataa tacacggatt tccagtactg tacccgacta      4020
     tcgcactcta cacacggaac acggactcga ttcttccagt gaaagctctt caatcgttcc      4080
     aaatgttgtt gcatgtacgg aaaatactca gcgacccctc aacgcatcat aacacgcatc      4140
     tcaggagaat tgctcgtaac agagagtcaa gatacgaagg aaacctatca ttgggaagac      4200
     cgtatacaga attcggccgt agaagatttg aatatgcagg aagcaaactg ttcaacgaac      4260
     taccaaccgt ttgtaaaact tcagcaactc tcaataagtt caaattttca ttgagaaatc      4320
     atttgaaaga aaacgttaat tcttacctcc gttaacgccg cctccaccct ccttccctta      4380
     tatgtgttta tatataagta ttcacctgcc ataatttttc ttatatctcc gccagccacc      4440
     gccagccacc gccagcctcg ccaccaaccg ccattgccct ccatcagcaa ccgcccacat      4500
     cagcccaact ccaccatcgc caacatttaa tgtcttgcca agaaaatcag aaatttgtaa      4560
     acctaggtta acattaacca tcaaatttca cttccttaaa agagcgacta tgctcactgg      4620
     aaagtgtatc atattgtatg aaaaatgaaa atgtgaacta tataaacgaa aagatgagga      4680
     ggttttatgc ctattggagg aagatgctta aaagaagctc acctccaatg ggcttttccc      4740
     tgctccaaaa aaagaagaaa taaaataaat aaaaaaaata aaaaaaa                    4787
//
ID   Crack-1_CP  repbase;    DNA;    INV; 4843 BP.
XX
AC   .
XX
DT   22-JUL-2009 (Rel. 14.07, Created)
DT   22-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Culex pipiens Crack non-LTR retrotransposon.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-1_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-4843
RA   Kapitonov V.V. and Jurka J.;
RT   "A family of Crack retrotransposons from Culex pipiens.";
RL   Repbase Reports 9(7), 1332-1332 (2009).
XX
DR   [1] (Consensus)
XX
CC   Crack-1_CP is a non-LTR retrotransposon that belongs to the Crack
CC   clade, a sister clade of L2 and Daphne. Like in other Crack
CC   retrotransposons, the ORF1 protein in Crack-1_CP contains a
CC   domain similar to the central domain conserved in vertebrate L1
CC   ORF1 protein. In Crack-1_CP-Crack3_CP retrotransposons, the ORF1
CC   protein contains also in its N-terminal part the PHD finger
CC   (C4HC3). The Crack-1_CP consensus sequence was derived from
CC   multiple alignment of 5 copies of Crack-1_CP that are 99%
CC   identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..1475
FT                 /product="Crack-1_CP_1p"
FT                 /note="ORF1."
FT                 /translation="MSSDEMDAENEIYCAICETAEPNAAKVLECVNCHACH
FT                 HFKCKKIIGNAIAKWKKKDYFCSVLCQEIHLKATSAANTESLLLAEFQKVV
FT                 SEIKNLKEEQHSTRKYVSKAVGEIEKSQNFLAHKFDEVCDNIKRLENEQHT
FT                 LKGSVGVVEGKYVQLSETVNRLEGEVDRYRRSALSCNAILLGIPEVKDENL
FT                 GEAVTRFAAVLGLNITEDFFSDVKRLRDSKSESRSPPIRIVFASEPNKEQF
FT                 FAKKKEVGQVQVSTLGGCYSGKSGRVMLRDEMTPHGLALLREVKEVQEQLD
FT                 LKYVWPGRNGVILVKKTDKSKVEYIQNRNDLQKLNKLSSKRGLEMSLSGPI
FT                 SSSSVIEQDPKRR"
FT   CDS           1525..4413
FT                 /product="Crack-1_CP_2p"
FT                 /note="ORF2."
FT                 /translation="MASCIVKNVSFDCIEDCICNKVNVSVALRVFQWNIRG
FT                 MNRLDKFDNIKEFLHRYKSPVDVLIVGETWVKEGCTELYGIEGYSAVFSSR
FT                 SDSHGGLVVYFRDKLKCFVTKNVNINGCHYICLHLQHAGKPIDLVAVYRPP
FT                 SYPFGATLEIIDKILSELPSEHVILAGDFNVPVNITTSPAVQEYLRLLDSF
FT                 NVQVTNTVATRPSSGNILDHMICTTTFADTLLNETIFTEASDHSILVSSFN
FT                 WHATKKLRVLEKQIVDHQRLNTLFSSALENMPDGMNANEKIAFITDKFNEI
FT                 KKSVTKTVSVEAKIKGHCPWMTLDLWKLLAIKEKLLKKSRTNPLDMQTKSL
FT                 LKHASKKVQSKKEECKRNYYYRQLSSSSTKQCWRCLNEIMGKAAGSVKEMK
FT                 LKIEGTEVTDPVTVSYELNKHFCTVGSNLASTIISDRNVLKFNTLRRIDTT
FT                 MYLHPTTSEEVLLLINKLDCSKSPGPDNITAAALKKHKLAFSCILRDIFNE
FT                 IILTGRYPDQLKSARVVPIFKSGDPMDVNNYRPISVLSVLNKIIEQLIASR
FT                 IKSFLNSLELLYKNQYGFRRGSSTRTATSELLDDIYQDLDGKRFTGSLFLD
FT                 LKKAFDVINHGLLLQKLERYGIRGAALSLLRSYLSNRMQFVNSNGINGDSA
FT                 IIDTGVPQGSVLGPLLFIIFINDLSRVQLFGKVRLFADDTVITYSHKDAVH
FT                 ITQMMQADLQTLNEYFTSNLLFLNLSKTVFMIFHSPQRTVPELPAVAINTT
FT                 EIKKVSSFKYLGLVLDETLNWKPHIDQLKKKIAPACGVLRKISSFVPFRWL
FT                 KSLYASLIHSRLQYLVINWGTANKVNLRELQTLQNRCIRTILRKPALYPRR
FT                 SLYNDVNHSFLTIRALHMFQIYVHMYNIMHNPTTHHNFNPVRVEHARITRQ
FT                 TGDLRTTLPHTEFGKRCLSYSGCYQYNKLPDFIKQSPSQITFKCQLKSHLK
FT                 QKIEQYLQ"
XX
SQ   Sequence 4843 BP; 1412 A; 1137 C; 1101 G; 1193 T; 0 other;
     aagaagaaga actacgttgt ttggtgctca tatctgcact gctgaaaaac aacaataact        60
     gaaggataac acaaccgcac aactcaacaa acctgtgcat cttggtcctg ttgctgacgc       120
     ggaactccgg gtggtattat ccagtggaaa tccaggggtg acaggccaga acttgtcggt       180
     aaaggtgaag gtgtatttac ggagaacaag gaaaattcca tccatcttgg caatcgcaag       240
     tattacccac tgataccgtt tcactgaatt gattgtttac agcggtacaa caccgttgcc       300
     tgtcactgtc actgtcatca cagtttacca gtcgagttgt ttcaaccatt tgaacactga       360
     gtgaactgat caactgtggt accttttcaa caaaataaac aaacgggatg tcgtcggatg       420
     aaatggatgc ggaaaacgaa atttactgcg cgatctgtga gactgctgag ccgaatgcgg       480
     caaaggtgct ggagtgcgtg aactgtcacg catgccatca cttcaagtgc aagaagatca       540
     tcgggaacgc gatagccaag tggaagaaga aggattactt ctgctcggta ttatgtcagg       600
     agatccacct gaaagcgacg agtgcagcga acacggaaag tctgctgttg gctgagttcc       660
     agaaggttgt cagcgagatc aagaacctga aggaggagca gcacagcacc aggaaatacg       720
     tgtcgaaggc tgtaggggag attgagaaga gtcagaattt cttggctcac aagttcgacg       780
     aagtttgtga caacataaag aggttggaga acgagcaaca cacgctgaaa ggatctgttg       840
     gcgttgtcga ggggaagtat gtccagctga gcgaaaccgt caaccgtctg gaaggtgagg       900
     tggacagata ccgtcgttct gcactgtcgt gcaatgccat tctcctggga attccggagg       960
     tgaaagacga gaatcttggg gaagctgtga ctcgttttgc tgctgtactg ggtctcaaca      1020
     tcactgagga tttcttctct gatgtgaaga gattgcgtga ctcgaaatcg gagagccgaa      1080
     gtccccccat cagaatcgtt tttgcatctg aacccaacaa ggaacagttc tttgctaaga      1140
     agaaggaggt tggacaagtg caggtttcta cgctaggagg ctgctacagc ggcaaatctg      1200
     gacgggttat gctgcgggat gaaatgaccc ctcacggatt ggctctgctt agggaggtga      1260
     aggaagttca ggagcaactg gatctgaagt acgtctggcc ggggcggaat ggagtcatcc      1320
     tggtgaagaa aacggacaaa tcgaaggtgg aatacatcca aaaccgtaac gacttgcaga      1380
     aactgaacaa actcagctct aaacgtggct tggaaatgtc tctaagcggc ccaatttcat      1440
     cgtcttctgt tatcgagcaa gatccaaagc gtcgctaggg aacgggtcgt tatttttact      1500
     gttttacttg tttatttata aaaaatggct tcatgtattg taaaaaatgt gtcctttgat      1560
     tgtattgaag attgtatttg taataaagta aacgtttcgg tggcactgag ggtttttcaa      1620
     tggaatataa ggggtatgaa tcgactggat aaattcgaca acatcaaaga atttcttcat      1680
     cggtataaat ctcctgttga cgtgctgatt gttggcgaaa cctgggtgaa agaaggctgc      1740
     actgaactgt acggaattga aggctactct gctgtattct catcacgttc ggattcgcat      1800
     ggaggtctgg tggtttactt tcgtgacaaa ttgaaatgtt tcgtcaccaa gaacgtgaac      1860
     ataaatggct gccactacat ttgtttacac ctgcaacatg ctgggaaacc aatcgatctt      1920
     gttgccgtgt atcgtccacc gagctatcct tttggagcga cccttgaaat cattgacaag      1980
     attttgagtg aattaccaag tgagcatgtt atccttgctg gggatttcaa cgttcccgtg      2040
     aacatcacga cgagtcctgc tgttcaggag tatctacgcc tactggattc gtttaatgtt      2100
     caagtaacga atacagtggc gacgcgacca tcaagtggga acatcctgga tcacatgata      2160
     tgcacaacta cctttgctga cacactcctt aatgaaacca tcttcaccga agcaagcgac      2220
     cattctatcc ttgtttcttc attcaactgg catgcaacca agaagcttcg agtcttggag      2280
     aagcagattg tcgaccacca acgtctcaac accttgttct cctccgcgct tgaaaacatg      2340
     ccagatggca tgaatgcaaa tgaaaaaatt gcgttcatta ctgacaagtt caatgaaata      2400
     aaaaaatcag tgacaaaaac ggtatcagtg gaagccaaga ttaaaggaca ctgcccttgg      2460
     atgacgttgg acctatggaa actcttggcg attaaggaaa agctcctgaa gaaaagcaga      2520
     accaacccgc tagacatgca gaccaaatcg ttgttgaaac atgcttccaa aaaggtgcaa      2580
     tcgaagaaag aggagtgtaa gaggaactac tactatcgcc aactttcgag ttcatctacg      2640
     aagcagtgtt ggagatgttt gaatgagatc atggggaaag cagcaggaag cgttaaggaa      2700
     atgaagctga aaattgaagg caccgaagtt acagaccctg taacagtgag ctacgagctg      2760
     aataaacact tctgtaccgt gggaagcaat ctggcctcaa cgatcatcag tgacagaaac      2820
     gtccttaagt tcaacacgtt acgtcggatt gacactacga tgtatctcca cccaacaacg      2880
     tctgaagagg tcctcctgct gatcaacaag ctagattgca gcaagtctcc aggaccagac      2940
     aacatcaccg cagccgcact gaaaaaacac aagctggcgt tttcgtgcat tcttcgagat      3000
     attttcaacg aaataatact gactggacgg tatccggatc aactgaaatc tgcacgtgtc      3060
     gttccaatct tcaagtctgg tgatcccatg gacgtgaata actatagacc gatctcggtt      3120
     ttgtctgtgc tgaacaaaat catcgaacag ctgattgcgt cgagaatcaa gagtttcttg      3180
     aactcgctcg agctgctgta caaaaaccag tatggattcc gacgtgggag cagcacccgc      3240
     actgctactt ctgagctact ggatgacatc tatcaggatc tggatggcaa gcgattcact      3300
     ggaagtctgt ttctagactt aaagaaggcg ttcgatgtca ttaaccatgg tttgctgtta      3360
     caaaaactgg agcgttacgg tattcgcggg gctgctctaa gtcttcttag atcctatctc      3420
     tccaaccgga tgcagtttgt gaactcaaac ggaatcaatg gagattcagc aattatcgac      3480
     actggagtac ctcaaggaag tgtactggga ccgttactgt tcatcatttt cattaatgat      3540
     ctatcccgtg ttcaactgtt tgggaaagta cgcctctttg ctgatgacac agtgatcacc      3600
     tacagtcaca aggacgccgt acatatcacc caaatgatgc aagctgatct acaaaccctc      3660
     aacgaatact tcacgtccaa cctcttgttc ctgaatctct ccaaaacggt gttcatgatc      3720
     ttccattcac cgcaacggac tgttccagag ctgcctgctg ttgccatcaa caccactgag      3780
     atcaaaaaag tctcgagctt caagtactta ggactggtac ttgatgagac gcttaattgg      3840
     aagcctcaca tcgaccaact gaagaagaag attgcacctg catgtggagt tctacgtaaa      3900
     atttcgtcgt ttgtaccttt tcgctggttg aaaagcctct acgcctcgct gattcattct      3960
     cgtctgcagt acttggtcat caattggggt actgcgaaca aggttaacct gagggaacta      4020
     caaacgctgc aaaatcgatg cattagaacg attctgagga aacctgcttt atatccgaga      4080
     cgctcgctgt acaacgatgt gaatcactca tttcttacca taagagctct tcacatgttc      4140
     caaatctacg ttcacatgta caacataatg cacaacccta caacgcatca taacttcaac      4200
     ccagtccgtg tggagcatgc acggataacg cgacagactg gagacctaag aaccacgttg      4260
     ccgcatacag aattcgggaa aaggtgtctt agttattctg gttgctatca gtacaacaaa      4320
     ctacctgatt tcatcaaaca atccccctcc caaataacct tcaaatgtca actgaagtca      4380
     cacctaaagc aaaaaatcga gcaatatctg caataatatc tgccactaac cacccaaaaa      4440
     ctgctttctc tccgccatgc cacaaccgcc aaccgcccgc cgcccaccgc ccgccgcccg      4500
     ccgcctaccg ctcgccgcct accgctcgcc acccaccgct caagcccgcc gcccgccgcc      4560
     cgccgccctt cgcccacgcc cgccgcccac cgctcaacgc acatcgcccg cccaccgacg      4620
     atcatcctta tcgtcactta ttgttcaccg aacaacataa tattagtata taaataatta      4680
     tctgtaattg ttgaagatgc acatccttaa cagagatata tatctcactg gattgtgcaa      4740
     gccgtccgag cctcacctca aaataaacat agaggtaggt gaatgttccc agctttgctg      4800
     tggagtgaga aattcggaat taattaaaaa ataaaaaaaa aaa                        4843
//
ID   Crack-1_CQ  repbase;    DNA;    INV; 4315 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4315
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 32-32 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..991
FT                 /product="Crack-1_CQ_1p"
FT                 /translation="MTGSDRRSINSKGGKNGKSANSETANSTVSQQLQEIS
FT                 AKLQKLDDLEKLNKDLYGKLLQLAHRVDVVSAENRLLKREIEDLRQDRLQE
FT                 EVLIKGFKFERPNQHLEVFRGVCERAGFDTPDDVKEVRPLVFKNNKRTDAV
FT                 LVKFWRVEDKGRFIRCIRSLKKPIAPRDIDIRSPNKFILVQDHLTPEKHKI
FT                 HTKAWDLCKLGLQRPWIYKGSTWITHPESNKRFRVADLGDLADIEFVLVTR
FT                 EGTAQGSATVQSKVTVSEQ"
FT   CDS           1002..3986
FT                 /product="Crack-1_CQ_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MEDIETLPDFHSHNFLFDSINNYDRDFSNFHGLLIFQ
FT                 VNARSICKISRFDQLKFVIEQLKRKPDVIVVSETWVSNDLIQLYRIDGYNS
FT                 VFSCRKNGTGGGLVVFVLDNLTFTTNCSLELSSVPKPINFIQISISVSNNR
FT                 SIVVSAYYRPPDDRNLTDFFNHLELILSASNSIHVLVGDINIDSSSSSNKF
FT                 LDYLNILTSYGFLLTNTNITRPSSSSILDHVAFNHTDDFTVTNDTITNPDS
FT                 DHNFILSLFDITPISTSAKISYKHQTNYVRLEQLLEMRFNPVYMGNFDDPN
FT                 EFYNYFISTLTKSIQESTIITELKSKSKHICPWFSDGLKTLLNSSKNLRKK
FT                 RNKLFAAGKSISEIDSKIHDLTNKIRTYSNTLQTQYYTNKFANATNAKDTW
FT                 KNINDILGRKIHSKLPTEMLITDAFGNDEKINNAQLISNEFNNYFSSIGEK
FT                 MANKIPSFPNDNINKFKTLKRPNSTFFLTPISQTEIFDIINSLKNNTACGN
FT                 DHINAFTLKKINHIISPVLAEIFNLCIILGVYPDKLKVAKVTPIHKSGSTS
FT                 SFNNYRPISVLSAINKVFEKLLFNRLTTFLNSNNFFCHQQYGFRERSSTFN
FT                 AVVDLVNKIQHDLDNRDDVLGLFLDLSKAFDTVDRRILFEKLKFAGIHGVA
FT                 LDLFKSYLTNRSQFVCFNGISSLMNLIDVGVPQGSVLGPLFFIIYLNDFSR
FT                 LPLKGDLRLFADDSSLFYNSRLNSVNDLNLKHDLLIVSEYFRINKLTLNIN
FT                 KTNIINIKNSSLSTPNPLIQTKIEFPDIDIVSEFKYLGILLDSRLNWSSHV
FT                 NSLILKLNKITGIVFKIKHKLPRNVLILIYHSLFNSLLSYLTAVWGNTYDY
FT                 LLNKLQIVQNKFLKSIFNLPLRSHTVDLYTKEKNIMPVRGIYIIQVCSFIY
FT                 KSLSNQTHTNTKFELSSHQHGTRNHNLLKRPNVSTLSGERSITFKGANYFN
FT                 FFFNKFGLCSSLSIFKDRLKLYLAQPEIVEKLIKSIDILS"
XX
SQ   Sequence 4315 BP; 1339 A; 821 C; 714 G; 1439 T; 2 other;
     actggcagca ctgcaacctg aaaggtcggc attatttacg ctccgtaaaa taaattcgga        60
     aaaattacta attmacttgt ttttcttgtg ttttgcatat ttccggtcgc tggaggacgt       120
     tgcggaaccg ggaggattgg agttctggtc ctgtggtcac ttttcggtga aatcatcttc       180
     aaatttcacc gtgtcgcaga ttgaggttag gatgaccgga tccgaccgac gctcgatcaa       240
     ttccaaaggt gggaagaacg gaaagtcggc gaactccgag acggcgaatt ccaccgtctc       300
     acagcagttg caggagattt ccgcgaagct gcaaaagctg gacgacctgg aaaagctaaa       360
     caaggacctc tacgggaagc tgctgcagct tgcgcatcgg gtcgacgtcg tttccgcgga       420
     aaaccgactg ctgaaaaggg aaatcgagga cctgcgccaa gatcggttgc aggaggaagt       480
     ccttatcaag ggattcaagt ttgaacgtcc gaatcaacac ctggaggtgt tccgtggtgt       540
     ctgcgagcgc gctgggttcg acacgccaga cgacgtgaag gaggtgcgtc cacttgtctt       600
     caagaacaac aaacgtaccg acgccgtgct ggtgaagttc tggagggtcg aagacaaagg       660
     tcggttcatt cggtgcatcc ggtccctcaa gaaaccgatt gctccacggg acatcgacat       720
     ccggtcccca aacaagttca tcttggtcca ggatcatctc acgccggaga agcacaagat       780
     acacaccaag gcctgggatc tgtgtaagct tggattgcag cgtccgtgga tctacaaggg       840
     atctacctgg atcacgcacc cggagtccaa caaacgcttc cgagttgctg accttggtga       900
     cttggctgac atcgagttcg tgttggttac gcgagaggga acagcccaag gcagcgcgac       960
     agtccagtct aaggtaactg tatcggaaca gtaagttgtg aatggaagac attgagacat      1020
     tacctgattt tcattcccat aatttccttt ttgatagcat aaataattac gaccgcgatt      1080
     ttagtaactt tcatggattg ttaatctttc aagtgaatgc aaggagcatt tgtaagattt      1140
     cgagatttga tcagcttaaa tttgtaatag aacagttaaa gcgtaaacct gacgtgatcg      1200
     ttgtcagtga gacgtgggtt tcaaatgatc ttattcagtt ataccgtatt gatggttaca      1260
     attcagtttt ttcttgtcgt aaaaatggta ctggtggggg tttggttgtg ttcgtcttgg      1320
     ataatctaac ttttacaact aattgtagct tagaactttc ctctgttcct aaaccaataa      1380
     actttattca aatttcaatt agtgttagta acaatagatc aatagtagta tcagcatatt      1440
     atagaccacc agacgatcgt aatttgacag acttttttaa tcatttagaa ttaattttat      1500
     ctgcaagtaa ttccatacat gtgctagtag gagacattaa cattgattcc agttcttctt      1560
     caaataagtt ccttgattac cttaacatct tgacgtcata tggatttctc ttaaccaaca      1620
     ccaacataac cagaccttcc agcagttcca ttttagacca tgttgctttt aatcataccg      1680
     atgattttac tgttacaaac gatactataa ctaatcctga cagtgatcat aattttatct      1740
     tatctttatt cgacattact cccatttcaa catcagctaa aatttcatac aaacatcaaa      1800
     ccaactatgt ccgtttagaa cagttacttg aaatgagatt taatcctgtt tatatgggaa      1860
     attttgatga tcccaatgaa ttttacaact attttatttc tactttaact aaatctattc      1920
     aggagagtac cattataact gaattaaaat cgaaatctaa acatatttgt ccatggtttt      1980
     cggacggtct caaaacatta ttaaattctt caaaaaattt gcgcaaaaaa agaaataagc      2040
     tctttgctgc aggtaaaagt atttccgaaa ttgattcaaa aattcatgat ttaactaaca      2100
     aaattcgcac ttactcaaac acattacaga ctcaatatta cactaataaa tttgctaacg      2160
     ctactaatgc gaaagatact tggaaaaaca ttaatgatat tcttggacga aaaattcatt      2220
     ccaaacttcc aaccgaaatg cttattactg atgcttttgg aaatgatgaa aaaataaata      2280
     atgctcaatt aatatctaat gaattcaaca attatttttc ctctattgga gaaaaaatgg      2340
     caaacaaaat tccttccttt cctaatgaca atatcaataa attcaaaact ttaaaacgtc      2400
     ctaattctac tttctttctt acacccatta gtcaaactga aatctttgac attatcaatt      2460
     cacttaaaaa taacactgct tgcggtaatg atcatattaa tgcttttaca ttaaaaaaaa      2520
     taaatcatat catttctcct gtccttgctg aaatttttaa tttatgtatt atccttggtg      2580
     tttaccctga caaactaaaa gttgcgaaag tgaccccaat tcataaatct ggttccactt      2640
     cctcattcaa caactataga cctatttctg tgctctctgc aataaacaaa gttttcgaaa      2700
     aattattatt caaccgttta actacctttt taaatagtaa taattttttc tgccatcagc      2760
     aatatggatt tagggaaaga tcatcaactt ttaatgctgt tgttgatctt gtgaataaaa      2820
     ttcaacatga tcttgataat cgtgacgacg tgttgggact gtttttggac ttgtccaaag      2880
     cgttcgacac ggtagataga cgtattttgt ttgaaaaact taaatttgca ggtattcacg      2940
     gtgttgcttt agacttgttc aaaagttatc ttacaaatcg ttctcaattt gtttgtttta      3000
     atggaataag tagtttaatg aatttaattg atgttggagt ccctcaaggt tctgtacttg      3060
     gtcctttgtt ttttattatt tatcttaatg acttttctcg tttacctctt aaaggggatc      3120
     ttagattatt tgccgacgat tcttctttat tttataacag tagactaaat tctgtaaatg      3180
     atttaaattt gaaacatgac cttttgattg tttctgaata ttttagaata aataaactta      3240
     cattgaacat taataaaaca aatatcatca atatcaaaaa ttccagcctt tctacaccta      3300
     acccattaat tcaaactaaa attgagtttc cagatattga tattgtatct gaatttaaat      3360
     atttgggtat tcttttggac agcaggctta actggtcttc acatgttaac tcgttaattc      3420
     taaaacttaa taaaataacc ggtattgttt ttaaaataaa gcataagctt ccaagaaatg      3480
     ttcttattct gatctatcat tctttattca actctttact gtcttactta actgccgtct      3540
     gggggaatac ttacgattat cttctaaata aacttcaaat agtacaaaac aaatttctta      3600
     aatcgatttt caaccttcca cttagaagtc ataccgttga tctatatact aaagagaaaa      3660
     acattatgcc tgtcagagga atttacatta ttcaagtttg ttcttttata tataaaagtt      3720
     tatcwaacca aactcataca aatacaaaat tcgaactttc ttctcaccaa catggtacaa      3780
     gaaatcataa tctgcttaaa cgtccaaatg tttccacttt gtctggtgaa cgtagtataa      3840
     ccttcaaagg tgcaaattac ttcaatttct tttttaataa atttggctta tgttcatccc      3900
     taagcatttt caaagatcgt ttgaaattgt atctagctca acctgaaata gttgagaaac      3960
     ttattaaatc cattgacatt ttaagttaaa caatatttta taactattac ttcatgtttc      4020
     ctttattgtt ccgatacagt tgtccattct atattttcat ttgccacatt catctcgtag      4080
     gttctttttt tcttttattt tctttccagc ccgtaacagc cagttccgaa ctcctgtaaa      4140
     ggtttccacc gatggagttc tgtcttcagc cgcagttcat tatttacttt ataattgtat      4200
     ttatttattg tattttttta accgaaaaga agcaggtttt tatgccagca ttctagtggc      4260
     ttttcctgtc caaggaaaat tgatcaaata aacaaacaat caatcaatca atcaa           4315
//
ID   Crack-20_AAe repbase;    DNA;    INV; 5409 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-20_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5409
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1236-1236 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
CC   Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..461
FT                 /product="Crack-20_AAe_1p"
FT                 /translation="ENSVCSARRLLGKNRNTQGAPILVTFGSASIKEKLFE
FT                 LKRAYGPLELSKLGDSFRGFSTRVVIRDELTAFGRELYQEAKELQSSMGYK
FT                 YVWPGRNGKILIKRQDGGKIEEIGSKKQIEDLKKMSAKRLLNSSSKERSTS
FT                 SSPVQEPASKRLQM"
FT   CDS           513..3410
FT                 /product="Crack-20_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFSNYVNKNFFYYTIAELNKNVNVNVDNKQLKILQIN
FT                 ARGMNCMGKFDKIRDILSLYIGNVDIVVVGETWLKENHTNLYNIDGFRSFF
FT                 SCRPDSSSGGIAVYVKQTIKLSLQKNEHDDGQHHIHLVIHAESSPFHVHAV
FT                 YRPPSYDVTRFMAMIDGICMGHGVDASCVIVGDVNIPVNHQSSSVVRQYNN
FT                 LLRCYNFEVTNTYTTRPASNNILDHVVCSDVVRRNVVNETILSDISDHYPI
FT                 LSTFKLHRAIEKRTLEKIIVNTRGLGEAFETAVEELVYESAEERLCKVIDL
FT                 YKSLKERFSKKVAVQAKIKGYCPWMNFDLWKLLRIKENVLASCKRRPSESG
FT                 PRELLARVSKLVQRAKDKCKKEYYGNLFRSSNHKQNWSHLNKVLGRSADDS
FT                 EEIKLMMDNQITNGRPVADAFNKFFSTIGPQLASTINSRQDINKYNSLSPL
FT                 NSSIFLRPASEQEVVVEIRNLDVNKSSGPDGLPIKFVKDHHRTFSLLLRDV
FT                 FNQAISTGVFPDCLKVARVTPIHKSGSKTDINNYRPISVLSVLSKLFEKLL
FT                 ATRLLSFLRTHNIMYSHQYGFRTGSSTLTATSELIDEVYEAMDSRELVGVL
FT                 YLDLKKAFDTIDHDILLKKLEYYGIRGTPNNLIRSYLTGRTQFVYVNGTIS
FT                 SQRGLTVGVPQGSNLGPLLFLLYVNDLPNLNLHGKPRLFADDTSLSYKNTN
FT                 PNDIVRHMKEDLMKLQDYFNESLLSLNLSKTKYMILHSPRRNISLHGDLMV
FT                 RGTTIEKVSCFKHLGLTIDSTLTWSDHINILQTQTSSTCGLLWKVSKFLPR
FT                 KSLLAMYHAFVQSKLQYLVSIWGAAAKSRLKPLQTIQNRCLKTVFKLPRLH
FT                 STVDLYRNSPSSVLPIPALRELQCLLQIHNNMFNREAHHNQNIERVSHRYS
FT                 LRNATVLVTSRANTELAKRSVSYFSRKSFNSLPVALKLEQNARKFKLAVKS
FT                 KIRTVVDRYII"
XX
SQ   Sequence 5409 BP; 1554 A; 1307 C; 1200 G; 1346 T; 2 other;
     atgaaaacag cgtgtgtagt gctcgtcgtc tccttgggaa gaaccgtaat actcaaggtg        60
     ccccgattct agtaacgttt ggctctgcgt caattaagga aaagctgttt gagctgaaac       120
     gagcttacgg gccgctagaa ctgtcgaagc taggtgattc ttttcgtgga ttcagtactc       180
     gagtagtaat cagagacgaa ctgacagcgt ttggacgaga gttatatcag gaagcaaagg       240
     aactgcagtc atcaatgggt tacaagtatg tgtggccagg aagaaacgga aagatactca       300
     tcaagcggca ggacggtgga aaaattgagg aaattggttc gaagaaacag attgaagatt       360
     tgaagaaaat gtcagcgaag cggttgctca actcgtcgtc caaagaaaga tcaacatctt       420
     catctcctgt acaagaaccg gcctcgaaac gtctgcagat gtaaagcgtt aaaaaatttt       480
     gtgtgtgtca tatctgagtt ttttatatta taatgtttag taactatgta aacaagaact       540
     ttttttatta tacaattgcg gagctaaata aaaatgtgaa tgtaaacgta gataacaaac       600
     aactaaaaat attgcaaata aatgctagag gaatgaattg tatgggtaaa tttgataaaa       660
     ttagagatat tctttcatta tacatcggaa atgtggatat agttgttgtt ggagaaacgt       720
     ggctaaaaga gaatcacact aatctgtaca atatcgacgg atttcgtagt tttttttctt       780
     gtcgcccgga ctcgtccagt ggtgggattg ctgtttatgt aaaacaaacg atcaaactga       840
     gtttacagaa aaatgagcat gatgacggcc aacaccacat ccatctggtc atccacgcag       900
     agtcttcgcc attccatgtg catgcagttt ataggccacc gtcttacgat gtgacgcgtt       960
     tcatggcaat gattgacgga atatgcatgg gacatggagt cgacgcatcc tgtgtcattg      1020
     taggtgatgt aaacattccg gtcaatcatc agagcagttc ggtagtccga cagtacaata      1080
     atcttttaag atgttataat tttgaagtca ccaatacata cacgacgaga ccggccagta      1140
     acaacatctt agatcacgta gtttgctcag atgtagttag gcgcaatgta gtcaatgaga      1200
     ctattctttc ggatataagt gaccactacc caatcctatc gacctttaaa ctacataggg      1260
     caattgaaaa gcgaacattg gagaagatca tcgtgaacac ccgagggcta ggtgaagcct      1320
     ttgaaactgc ggtcgaagaa ctggtctatg aatctgctga agaaagacta tgcaaagtga      1380
     tcgatttgta caaaagtcta aaggagcgat tttcgaagaa agtggctgtg caagccaaaa      1440
     ttaaaggcta ttgcccatgg atgaacttcg atctatggaa gttacttcgc atcaaggaaa      1500
     acgttctggc cagctgcaag cgacgccctt ctgaaagtgg accaagggaa cttctagcac      1560
     gtgtgtctaa gttggtacaa agagctaagg acaaatgtaa aaaggagtac tatggcaacc      1620
     tatttcgtag cagtaaccat aaacaaaatt ggagtcattt gaacaaagtt ctgggaagat      1680
     cagctgatga ttcggaagag attaagctga tgatggataa tcagataaca aatgggcgtc      1740
     cagtggcgga tgcgttcaac aagttcttca gtactattgg accccagctt gcctcaacaa      1800
     ttaacagtcg ccaggacata aacaaataca attcgcttag tcctctcaat tcttcaatct      1860
     tcttgcgtcc ggcaagtgag caagaggtcg tggtcgagat aagaaatttg gatgtcaata      1920
     aaagcagtgg accagatggt ttaccgataa aattcgtcaa agatcatcat cggactttct      1980
     cattattgct tcgcgatgtc ttcaatcaag ctattagcac aggagtcttt cccgattgct      2040
     taaaggtagc acgtgtgacg cctatccaca aatcaggatc caaaactgat atcaataact      2100
     accgaccaat atctgtgctg tctgtcttga gcaagttatt tgaaaaacta cttgcaacga      2160
     ggttgctaag ttttttgcgt acgcacaata tcatgtacag ccatcagtac ggttttagga      2220
     caggttccag taccctcaca gcaactagtg agttgatcga cgaggtctac gaagctatgg      2280
     attctcggga actggttggg gtactctacc ttgacttaaa gaaggctttc gacactatcg      2340
     accatgacat attgcttaaa aaattggaat actacggaat tcgaggaaca cctaacaact      2400
     tgatacgcag ctatctcacc ggaagaactc agttcgtgta tgtaaatggg acaattagct      2460
     cacaacgtgg attaacggtt ggcgttccac aaggcagcaa tctcggtcct cttttgtttc      2520
     ttctatacgt aaacgactta ccaaacctga atttgcacgg gaagccacgg ttattcgcgg      2580
     atgatacctc actatcgtat aaaaatacaa acccaaatga catagtgcgc cacatgaagg      2640
     aggatttgat gaaacttcag gattatttca atgaaagttt gttgtcattg aacctatcca      2700
     aaacgaaata tatgatattg cactcacctc gccggaacat ttcgctacat ggagatctaa      2760
     tggttcgagg gactacgata gaaaaagttt cgtgtttcaa gcatcttggt ctaacaattg      2820
     attccacgct tacatggagc gatcatataa acatactgca aacacaaact agctcaacgt      2880
     gcggtttact atggaaggtc agcaagttct taccacggaa atcgttgttg gccatgtacc      2940
     atgcctttgt ccagtctaaa ctgcaatacc ttgtttcgat ttggggagca gcggcaaagt      3000
     ctcgactgaa accattacaa acgatccaga accgttgtct gaaaactgta ttcaagttac      3060
     caaggctcca ctcgaccgtg gatttatata gaaacagtcc gtcatcagta ttaccaatcc      3120
     ctgccttgcg agaattacag tgtttgctcc aaattcacaa caacatgttt aacagagagg      3180
     cccatcataa tcagaacata gaacgagttt cgcatagata ctcgctacgg aacgcaacag      3240
     ttttggttac ctcgcgtgct aatacagagt tggccaaaag atcggtttcc tacttcagta      3300
     ggaaaagttt caattcgtta ccagttgctc tgaagcttga gcaaaacgcg aggaaattca      3360
     aacttgcagt gaagtccaaa atacgtactg tagtggacag atacataata tgagaaacac      3420
     aacattatgg aaaaccgtca aagaacatgt gccggaaact gccgattgta gcatatttgg      3480
     ccgcgcagcg ccgcgctcat cctacggcga aagtagaatc cagctcttca gggtttgagg      3540
     ccagtgtgct tcaaacagtc atccgtgcac cgctcattat tcggctgaaa gcagaatcca      3600
     gctcttccag aggcgcatcg accgccttcc cgccaaccga gaggagaatc tagccttctg      3660
     attcatccgt ggaccgcaca tcccttgtct aaaagcagaa tccagctctt ccagtagatc      3720
     gaccgcttcc cccgccaacc acaacgtgct ccgaacagtc gtccgtggac cacacatctt      3780
     tcggctgaga gcaaaatcca gctcttccag gtaagagact ggtatatgtc tagccgaagt      3840
     cagtgatgct gcgcgcctaa tcagtttgac taactgttcc agaggcacat cgaccgcctt      3900
     cccgccaacc gagaggagaa tctagccatc tgattcatcc gtggaccgca catcctttgt      3960
     ctgaaagcag aatccagctc ttccagaata tcaaccgctt ctcccgccaa ccaaaacgtg      4020
     ctccgaacag tcgtccgtgg accactcatc tttcggctaa gaggcatgaa tccagctctt      4080
     ccagtacatc aaccgcttcc cccgccaacc acaacgtgct gcgaacagtc gtccgtggac      4140
     cgctcatctt tcggctgaga gcagaaccca gctcttccag gtaagagact ggtatatgtc      4200
     tagccgaagt cagtgatgct gcgcgcctaa tcagtttgac caactgttcc agaggcgcat      4260
     cgaccgcctt cccgccaacc gagaggagaa tctagccttc tgattcatcc gtggaccgca      4320
     catcctttgt ctgaaagcag aatccagctc ttccagtata tcgaccgctt cccccgccaa      4380
     ccataacgtg ctccgaacag tcgtccgtgg accgctcatc tttcggctga gagcagaatc      4440
     cagctcttcc aggtaagaga ctggtatatg tctagccgaa gtcagtgatg ctgcgcgcct      4500
     aatcagtttg accagctgtt ccagaggcgc atcgaccgcc ttcccgccaa ccgagaggag      4560
     aatctagcct tctgattcat ccgtggaccg cwcatccttc gkctgagagc agaatccagc      4620
     tcttccagta tatcgaccgc ttctcccgcc aaccacaacg tgctgcgaac agtcgtccgt      4680
     ggaccaccta attatatttc ggctgagagc agaatccagc tcttccagag gcacatcgac      4740
     cgcctgcctg ccaaccgaga ggagaatcta gccttctgat tcatccgtgg accgcacatc      4800
     ctttgtctga atgcagaatc cagctcttcc agtatatcga ccgcttctcc cgccaatcat      4860
     aacgtgctgc gaacagtcgt ccgaggacca ctcattttcg gctgaggcag aatccagctc      4920
     ttccaggtaa gagactggta tatgtctagc cgaagtcagt gatgctgcgc gcctaatcag      4980
     tttgaccaac tgttccagag gcgcatcgac cgcctgcccg ccaaccgaga tgagaatcta      5040
     gccttctgat tcatccgtgg accgctcatc ctttgtctga gagtagaatc cagctcttcc      5100
     tgtatatcga ccgcttcccc cgccaaccat aacgtgctgc gaacagtcgt ccgtggaccg      5160
     ctcatctatc ggctgagagc agaacccagc tcttccagtg gcgcaacgac cgctggcccg      5220
     ctaaccgaga ggagaatcta gcccttcatg acaagacctc atccgtggac cgctcatctt      5280
     tcggctgaga ggaaaattca gctcttccag cgaaaacgtc cacattcagc cgtctataaa      5340
     ccgtttgtcc atcggactgt aggagaggtg atctagagga agtatcagac ccagccgttt      5400
     ctcgacaca                                                              5409
//
ID   Crack-21_AAe repbase;    DNA;    INV; 5478 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-21_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5478
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1237-1237 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1134..2186
FT                 /product="Crack-21_AAe_1p"
FT                 /translation="MEGVDSICVECNKVEKDAGKLITCMYCFSEAHYKCRN
FT                 LVGNAARRIKDRMYFCSHNCSSIYQRITEMQNQKSQIVETLAAELKGAVSN
FT                 AVSLEMKSVRGEVHQITTAIEKSQQFLSDKFDAIVSDFQELRRENENLKQE
FT                 IVKLKQTHQHMSKIVHKLEHDVDKTNRKENCNNAIVLGVPFSPDENTLGIV
FT                 QKIIDCYGCTESNAIVSANRLGGKTKARNFLIPIRVVFQDRDSKEAVFSKK
FT                 KNFGKLNSTSVDANYVINGKPTTITMRDELTPLSLELLREMREHQDRLNVK
FT                 YVWSSRDGNVLVKKNEHSKPELIKTRDDMVDLINRYTNKSPVRTTPSPKRK
FT                 CSNVNSNV"
FT   CDS           2243..4819
FT                 /product="Crack-21_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDGLINVYHDCTDDFNLNYSLSVDNYLRIAQWNIRGM
FT                 NDMQKFDNISLFLDSIKIPIDVLVVGETWLKSDNCALYNIPGFKSVFSCRT
FT                 ASAGGLAVYVQVGLVFNVLKNIETDGFHLIHIEINKKGFRSEVVALYRPPS
FT                 FDFNRFHDEIENILSVQNPLPRFFVGDLNIPINLLNNNIVVRYKSLLESYN
FT                 YACSNTLVTRPISNNILDHFVCRNDDLGSIRNDTIYTNISDHLQVVSSIKI
FT                 KGSKECTMLTKKFIDKPKTQELFKNFLEHFNLCGDANNSILTITTTYKNIL
FT                 AQCTKTKSVKVNIKSQHCPWINYYLWQWLKLKQKYLKKVKNNPHNNHLKNL
FT                 LQHVSKRTDDAKRRCKSDYYKQLLENTCHAKLWKNLNEVMGRSKPKTRLEL
FT                 KVNGCSISDSSEVCEAFNDFFSKIGKNLADKIPKSNSNPLSNINRLEPSIF
FT                 LNPANEIEVFGIINELDANKSSGPDNLPTSVVKANINIFSNIFAQLFNQIL
FT                 EQGIYPECLKVAKVTPVFKSGEASDPSNFRPISTLSVISKIFEKMLVNRLV
FT                 KFMDKYNILYKFQYGFRKGSSTSTAIVELVDFLIDKIDNKCVIGGLFIDLK
FT                 KAFDTLNHNILLQKLEYYGIRGVANNIIKSYLSDRHQFVAIEDFRSALKTI
FT                 NIGVPQGSNIGPLLFLLYINDLGRLPLKGIPRLFADDTAIFYPSLDPSAII
FT                 PSMNSDLLILMRFFDSNLLSLNLMKTKYMLFHSPRKKVNFDINLRIGQTEI
FT                 ERVYNFKYLGLVLDPSLSWGIHIDRIQRKVSSLCGLIYRVKPFVPRYALLK
FT                 FYFGCVHSHLQYLIIVWGHACQSKLKKTASFAKSMLQNHLFLTTTISYHSN
FT                 LYKFTT"
XX
SQ   Sequence 5478 BP; 1777 A; 934 C; 1016 G; 1750 T; 1 other;
     ctggcaacac tggcgtgtag ttgatacgtg tgctaacgat acgcaatttt aattagttct        60
     aacagagtgt aatttgatag tttaaatcct tttcwtctca catttgcatc gtgagtattg       120
     gcatacatac tattctgaaa tcagttactt aaatattgtg ctaaaatagt cataacagat       180
     aaaacttaaa gtgcatgata ctcggttatg aacagagata gtcattggtt tgtgctgtgg       240
     tgatgtattg agttggtatt gttgactgct gctgttgttg ttgctggatg gatagtcgta       300
     tgccttgcat tgggttaatg aattaaactg aaatttgtgt atgcgtgcat atattattca       360
     gattttgcac acaaagtggt ttctgcttct gccttttgag tgaaatacat gactctgcca       420
     gatagattta gcgaaaattg agcgaacggg cgtcttgcac aatctagccg ttggttcgcg       480
     ctaggtgcat tggtgctgta gtagtttgat tagtagcacg ctttgcggtt ctactggtaa       540
     tgaacatgct atagtaaccc tgagtcagtt agtggatttg gcgaaattcg ggcgaacggg       600
     cgtcttgcac aatctagccg ttggttcgcg ctaggtgcac tggtgctgta gtagtgtgaa       660
     tagtagcaca ccgagtgtat ctgttcaatt cttgtgaaac gaaaacggtt gcgtacaagt       720
     cttgtacgca agtctgagta gttcttacag ggtcgacaga ttttgcaaaa tttggatgat       780
     agagccgaaa tttgaattat agagcttata tgataaatcc gttgaggagc aaataggtgt       840
     attattaact gtccggtaat tcagacgtag catgttagca gcaatatatt tatgtgtata       900
     aatgttcgta ccatatgact tttctgttcg tattgctggg tctaattgag ctgccattct       960
     ttcatgtttt tggttcaata ttgtagtgta ctgatttttt tgatttttgc tattgagttt      1020
     attcaaagtt ggtgtgtgta acggttattt tccttttaca tttatttatt ttagttttcg      1080
     ttggaatttg attctggatc tgtcttagca tagttgttct catattcggt ataatggagg      1140
     gcgtagacag tatttgcgtc gaatgcaaca aagtagagaa ggatgctggc aagctaatta      1200
     cttgcatgta ctgttttagc gaagcgcatt ataaatgccg taaccttgtc ggtaacgcag      1260
     cacgacgtat caaggatagg atgtattttt gttcgcataa ttgttctagc atttatcagc      1320
     gcatcactga aatgcagaac caaaaatcac aaattgttga aacactagca gctgaactca      1380
     agggagcggt ttcaaatgct gtttctctgg aaatgaaaag cgttagaggt gaggtgcatc      1440
     aaatcaccac cgcgatagaa aagtcacagc agttcctttc tgacaaattt gatgcaattg      1500
     tgtcagattt ccaagaatta aggagggaaa atgagaattt gaagcaagaa attgttaagc      1560
     ttaagcaaac acaccagcac atgtcaaaaa tagtccataa gctcgaacac gatgttgata      1620
     aaactaaccg taaggaaaat tgtaacaatg ctattgttct aggggtaccc ttctctccag      1680
     acgaaaatac attaggaatt gttcaaaaaa ttatcgactg ctacggttgc actgaaagca      1740
     acgcaattgt gtcagcaaac agacttggcg gcaaaaccaa agcaagaaat ttcttgattc      1800
     ccattcgagt agttttccag gatagagatt caaaagaagc cgttttttcg aaaaagaaaa      1860
     atttcggaaa acttaattct acttcagttg atgcaaacta cgttatcaat ggaaaaccga      1920
     ctacaattac aatgcgggat gaactaactc cgctgtcgtt agaattgctg agagaaatgc      1980
     gggagcatca agatagatta aatgtcaagt atgtctggtc aagtagagat ggtaatgtcc      2040
     tagtcaagaa aaatgaacat tctaaaccgg aattaatcaa aacacgcgat gatatggttg      2100
     atcttattaa tcgttacaca aataaatcac cggttagaac aaccccttcg ccaaaaagga      2160
     aatgttcaaa cgtcaacagt aatgtgtaat tctttaatgt aattttaaat gttgtgtcta      2220
     cttataataa tttattttca aaatggatgg tttaataaat gtttatcatg attgtactga      2280
     tgattttaac ttgaattatt ctctaagtgt tgataattat cttcgaatcg ctcaatggaa      2340
     catacgaggc atgaatgata tgcaaaagtt cgataatatt tctctattct tagatagcat      2400
     caaaatccca attgatgtgt tagttgttgg tgaaacgtgg ctcaaatcag ataattgtgc      2460
     gctatataac ataccaggat ttaaatctgt tttttcttgt cgtactgcat cggcgggcgg      2520
     ccttgctgta tatgtacagg taggattagt gttcaacgtt ttgaaaaaca ttgaaactga      2580
     tggatttcat ttgatccata ttgaaattaa taaaaaaggg ttccgtagtg aagtggttgc      2640
     attatacaga ccaccatctt ttgacttcaa tcgattccat gatgaaatag aaaatatatt      2700
     atcggttcaa aatccacttc ctcgtttttt cgtcggtgac ttgaacattc ccattaattt      2760
     attgaacaac aacattgttg ttcgatacaa aagccttctc gagtcctata attacgcttg      2820
     ctcgaataca ctcgtgactc gaccaattag caataatatt ttggaccact ttgtatgcag      2880
     gaacgatgac ttaggaagta taagaaatga taccatctat acgaatataa gtgatcattt      2940
     acaggtagtt tcttcaataa aaatcaaggg ttctaaagaa tgcactatgc ttacaaagaa      3000
     attcattgat aaaccaaaaa cgcaagagct gtttaaaaac ttcttagaac attttaatct      3060
     atgcggtgac gcgaacaatt caattttaac cataaccact acctacaaaa acatattggc      3120
     tcaatgtacg aaaaccaaaa gcgtaaaagt aaacatcaaa tctcaacact gtccttggat      3180
     taactactat ttatggcaat ggttgaaact taaacaaaaa tatctcaaaa aagtaaaaaa      3240
     caacccccac aataaccatt tgaaaaatct gctgcaacat gtgtccaaaa gaactgatga      3300
     tgctaaaagg aggtgtaaga gcgattatta caaacaactg ttggagaaca cttgtcatgc      3360
     aaagctttgg aaaaatttga acgaggtcat gggacgttct aaaccaaaga ctcgcttgga      3420
     actaaaagta aatggttgtt caatatctga tagttcagaa gtttgtgaag cattcaatga      3480
     tttcttttca aaaataggga aaaatcttgc cgacaaaata ccgaaaagta attccaatcc      3540
     tttaagtaac attaaccgat tagaaccctc aatttttcta aaccctgcga atgaaatcga      3600
     agtattcggg attataaatg aacttgatgc aaataaaagt agcggtcctg ataatctccc      3660
     aactagcgtc gtcaaggcta atatcaacat cttttcaaat atttttgctc aactttttaa      3720
     ccaaatatta gagcagggaa tatacccgga atgtcttaaa gttgcaaaag taactcctgt      3780
     ctttaaatcc ggtgaagcgt ctgaccctag caattttcgg cccatttcaa ctttatctgt      3840
     tatcagtaaa atttttgaaa aaatgctggt aaacaggtta gtaaaattca tggataagta      3900
     caacatatta tacaaatttc aatatggctt cagaaaaggt tccagtacct ctacagcgat      3960
     agttgaactt gtcgattttt taattgacaa aattgataac aagtgtgtta ttggtggtct      4020
     ttttatagat cttaaaaagg catttgacac cctaaatcac aatattcttc tgcaaaaatt      4080
     agaatactat ggaatacgag gtgtagcaaa taatatcatt aagagctatt tgagtgacag      4140
     acatcaattt gtagcaatcg aggactttcg aagtgctttg aagacgatca atattggcgt      4200
     tccccaaggc agtaatatag gccctctttt gttcctttta tatataaacg accttggaag      4260
     actaccttta aagggaattc cgagactttt cgcggatgat acagcaattt tctatcctag      4320
     tctggatcct tctgctatca ttccgagcat gaacagtgat ctactcattc ttatgcggtt      4380
     ttttgactcc aatttattgt cactaaattt aatgaaaaca aaatatatgc tgtttcattc      4440
     cccaaggaaa aaagttaatt ttgatataaa tcttcgtata ggacagaccg aaattgaaag      4500
     ggtgtacaat tttaaatatc ttggcttagt attagatccg tcactttcat ggggtatcca      4560
     tattgatcga attcaaagaa aggtctcatc tctttgtgga ctaatatatc gagtgaaacc      4620
     atttgttcct cgttatgcac ttcttaaatt ttattttgga tgcgtacatt ctcatctcca      4680
     atacctcatc atcgtttggg gtcatgcctg ccagtctaaa ttgaaaaaaa ctgcaagttt      4740
     tgcaaaatcg atgcttcaaa atcatttatt ccttaccacg actatatcct accattcaaa      4800
     tctatacaag tttaccacat agcgctttac ctctacgtgg cctttgcgac ttacaatctt      4860
     gtttgtttgt ttatgatatt ataaaaaatc ctaacatgca tactaacttg gtattacctg      4920
     ctagttccca cagctacaat acaagacatg caagtaactt gatcagatct agagccttaa      4980
     cctgtctcgg tcaaacgcgg atatcattca acggaccttc tatatacaac aaaataccaa      5040
     cgcgattgaa agcgatcaac aatagaattt tattcaaaac gagtttaaaa cagtactaca      5100
     gatccaaaat caacacattc ctgaattaat ttcgtatcaa ctgccagttt tctgatattt      5160
     tcatttaatt tatagcactc tgtttaatgt tctatgtatg ttttatttaa tagtgtataa      5220
     ttatatattt agattaaact aatttagttt ctactctggg atcccttaaa aggaacaaag      5280
     ttccactggg catccctaga tatatttagt attttttgta gtattcatca ctttcgttca      5340
     cacaccaatg taataatgta aaagtaagtg taattattgt aaatttagat gagtccacta      5400
     ccagggggct cgatgcagag ctttttggtg tgggggttag tggtgggcta aaaaaaaaaa      5460
     aaaaaaaaaa aaaaaaaa                                                    5478
//
ID   Crack-22_AAe repbase;    DNA;    INV; 5086 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-22_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5086
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1238-1238 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 19 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           743..1504
FT                 /product="Crack-22_AAe_1p"
FT                 /translation="MSSRSIEELPDLISEYLSNHADKVLANIERSQQFLSN
FT                 KLDDFVDQLLCLRAEISKLKIENEQLKKSLALVSNETAAVSDAVYKNEVDL
FT                 DMHQREKLTANAIVVGIPRVPNENTKSLFDETCRTLGLEFSNNSIVSCDRV
FT                 SAAKGENQPIKITFNDIRDKEALITKKKQFGLLTVTMIKGVRWPHGWTNKV
FT                 HIRDDLSPLSMDIFRELKKHQTSLKLQYVWPSRNGIILVKQTKTSKHIKIQ
FT                 SRADLNKLLTNKP"
FT   CDS           2073..4955
FT                 /product="Crack-22_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEQINLAVNRQLDNASIPIASFVGITVLQINIRGINS
FT                 YEKLDSLCIFLRNLSSTIDVLVIGETWIKQGRSNFYNIPGYNSTYSCRNNS
FT                 SGGLAIFVRDGLNFHVKNNSTDNGYHHIAVELLSSVRIIVHGIYRPPGYDV
FT                 NHFVSNLENILSSVDSKCPCFILGDMNVAVNDVESLGTQRYLQLLSSYDMI
FT                 VTNTHMTRPASNNLLDHVITQANHSEFVENFTIDCNLSDHCYILTQFSTKI
FT                 HKTSKTLNKRMVNHRLVNSNFQMFLQSFDFNSLNPNDRISLITDHYAHLVN
FT                 RFSSTVSVNVKVKTTTCPWYNFDIWKLSKISNNLFQRWKRDRLNQQLRSLL
FT                 DHANKMLAKAKHRAKSAYYQRIFSSSNPKQLWSKINELIGNTSSKEKEPVL
FT                 ETQGVETTNPNDIGRIFNNFFSSIGGSLASSLVSDGNINKFNTMTISNRTM
FT                 FLRPTSQVEVSTIISGLDVSKATGIDGFSVMALKQNGVALSTIICNCFNDS
FT                 ISMGIYPDCLKKALVFPVFKGGNAKNPTNYRPISVLPSINKVFEKLLSMRL
FT                 NSFMDATGLLYQRQFGFRQGSSTEVAVLELADDIASSIDRKLSAGVVFLDL
FT                 SKAFDTINHHILLQKLDAYGIRGAANDYLRSYLTNRQQQVVVSGIRSTTCS
FT                 ISCGVPQGSNLGPLLFLIYVNDIAKLELKGKLRLFADDTAISYEATNVYEL
FT                 SEDMSTDLHIVTSYLENNLLALNLQKTKTMLFGAKDTQGHPVLTINGVVIE
FT                 EVDQFKYLGVLIDSQLKWDAHIREVVAKCSSLCGILRRLSSFVPQQVLLKM
FT                 YYAFIHSRYQYGISAWGSTYNTYLKEIQIQQNRCMKAIYRLPYLQPTNTLY
FT                 TEMEHNILPIAGLYTMRAGIIMFKIVHNINLHHNWIFNTAAHQYRTRQAHL
FT                 LQRSGFRTEIGRRRFENMGPRIYNQLPESIKNSHSINMFRKCLRIHIKNNI
FT                 NNFIIR"
XX
SQ   Sequence 5086 BP; 1632 A; 1060 C; 957 G; 1434 T; 3 other;
     ctgctggcaa ccctgctgtg aactagctgt tgtgttctgt gctccgccta aatcgagaaa        60
     attttgattg aaatatcaga taaaaaatct ctctgctgca taaaaatcgc tccaaaatcg       120
     ctgctgtcct gctatcacaa agattagcac atacgtgagt agaaactcct gggaaattcc       180
     tccgtaaagt tgctgtgctg ctgctagata ccatcggcca tactagtgct cgtatgtaaa       240
     cacaaacccg ctttgtgaat tctgctgctg ctgttgttga tatgctgttt gttgatatgc       300
     tgttgttacc aagttgaagg ctcaaattaa gctttgcgcc actcttagag aacgatcaat       360
     ggtcctgctg ctataaatca aagaatcttg ataatgacga tcattttgta ctgccgaata       420
     tgctgaaata aacggagttt tttgctggtt gtttttattt gcccaccgcc gccctgccac       480
     cactgccaac tgctccaccg ctaccgtcca accaccgttc tattgctctg ctgtaatcat       540
     ctgctgaata cacctgcgta cccatcatcg tcctactccg acacatctga agaagtccat       600
     cactatccgt gtaagtgtgt aggtaagcat cacacaactc gatcggatta cgttgacgtt       660
     tggccacatc agggaaccac tacaccattg tttggttttt caaaagcgcc atcttttgac       720
     gagcatttga actacaagca caatgtcttc tcgtagcata gaagagttgc cagatttgat       780
     ttctgaatac ttatcgaatc atgctgacaa ggtactcgct aatatcgaac gaagtcaaca       840
     gtttttatcc aacaaacttg acgacttcgt tgatcagcta ctgtgtttaa gagcagaaat       900
     aagtaaactt aaaattgaaa atgagcaatt gaaaaaatcc ttggcgttgg tttcaaatga       960
     gacagctgca gtttctgatg cagtttacaa gaatgaagtt gatttggata tgcaccaacg      1020
     agaaaaatta acagcaaatg caattgtagt aggcattcca cgtgttccga atgaaaacac      1080
     aaaatctctc ttcgatgaaa cttgccgtac attgggtctt gaattcagca acaactcaat      1140
     agtttcatgt gatagggtat cagctgccaa aggtgaaaat caaccgatca aaatcacttt      1200
     caatgatatc cgtgataaag aggcactgat cacgaagaaa aaacagtttg gtctgctaac      1260
     cgtaactatg atcaaaggcg tacgttggcc ccacggttgg actaacaaag ttcatattag      1320
     ggatgatttg tctccactat cgatggacat cttccgagaa ctgaagaagc atcaaacttc      1380
     gttgaaactc cagtatgttt ggccaagtag aaatggtatc atacttgtta aacaaacaaa      1440
     aacttcaaag catattaaaa ttcaatctcg agctgatttg aataagcttc tgaccaacaa      1500
     gccgtaattc cttcatccag ttggacatag actaatacga caagaagcaa atcaatcttg      1560
     ccataaatca acagttagac aacgcatcca taccgattgc ctccttcgta gaaatcacta      1620
     tgttccaatt atacgtggta tcaacagcta cgtatgcaaa agcctcatta gaatagctaa      1680
     aagacttttc tggtcgactt tctcaaaaat tcgactttcg acggtcttgc tatatgccat      1740
     ttcaaacgga aaaatttgga gtcaattttg aagaacgttg aagcaaaaat caaattttat      1800
     accgtaaaca tttcaagtgc attacagttc gcgcaatgaa tgagcttttg atgatacgct      1860
     tgtcagacgt tgagagggtg tcatttcgcc ccgatgttca ttatgccccc aatccccsta      1920
     cgttcggacg agtagaattg crncatactt gttaaacaaa cgaaaacttc gaagcctatc      1980
     aaaattcgat ctcgagctga tttgaataag cttctgacca acaagctgta attccttcaa      2040
     cgctccggtt ggacatagac taatacaaca agatggagca aatcaatctt gccgtaaatc      2100
     gacagttaga caacgcatcc ataccgattg cctccttcgt aggaatcact gtgttacaaa      2160
     ttaatatacg tggtatcaac agctacgaaa agttagactc gctatgtatt tttctacgaa      2220
     acttaagttc aacaatcgac gtcttggtaa taggagaaac gtggatcaaa caaggcagat      2280
     caaattttta taacattcct ggttataaca gtacctattc ttgtcgcaac aactcatccg      2340
     gtggcctagc tatatttgtt cgagatggtt taaacttcca tgttaagaat aactctacgg      2400
     ataacgggta tcatcatata gcagttgaat tactgtctag tgtacgtatt atcgtacatg      2460
     gcatctatcg tcctcctggc tatgatgtta atcactttgt tagtaatttg gaaaatattc      2520
     tatcttcggt ggattccaaa tgtccctgct tcatactggg ggatatgaac gtagcagtca      2580
     atgatgtgga gtctctgggg acacagagat acctacaact attatcatct tatgatatga      2640
     tcgttacaaa cacgcacatg acacgtcctg ccagcaataa cctgctcgat catgttatta      2700
     ctcaagccaa ccactccgaa tttgtcgaaa acttcacaat tgactgtaat ctgagcgacc      2760
     actgctacat tctgactcag tttagtacca aaatacacaa gactagcaaa acgctgaaca      2820
     aaagaatggt gaatcatcgg ttagtcaact ccaactttca aatgtttctc caatcattcg      2880
     atttcaactc attgaatccc aatgatcgta tatcgcttat tactgatcat tatgcgcatc      2940
     tggtaaatcg tttctcgtct acagtatcag ttaatgtcaa agttaaaacc actacctgtc      3000
     cttggtacaa cttcgacatt tggaaactaa gcaaaatctc gaacaatttg tttcaaagat      3060
     ggaaaagaga taggctgaat caacaactac gaagcctttt agatcacgca aacaaaatgt      3120
     tagctaaagc caaacatcga gccaaatcag cttattacca acgaatcttt tcctctagca      3180
     accctaagca actatggagt aaaataaacg aacttatcgg aaatacttca agcaaagaaa      3240
     aagaacccgt tttagaaacc cagggcgtcg aaaccaccaa cccaaatgac attggacgca      3300
     tcttcaacaa cttcttttct tccatcgggg gaagtctcgc tagcagcctg gtttcagatg      3360
     gaaacatcaa taagttcaac acgatgacaa tatctaacag aacaatgttc cttcgaccaa      3420
     catcgcaagt ggaagtttct accataattt ctgggctaga tgtgtcaaaa gctactggaa      3480
     tagacggttt ctcggttatg gcattgaaac aaaatggcgt agcgttgtcc actataatat      3540
     gcaattgctt caacgacagt atttctatgg gaatctatcc agattgtctc aaaaaggcgc      3600
     ttgtatttcc agttttcaaa ggaggaaatg caaaaaatcc aacaaactat cgaccaattt      3660
     ctgttctacc gtccatcaac aaagttttcg agaagctgtt atcgatgcgt ttgaatagct      3720
     tcatggatgc cacaggattg ctctatcagc gccagtttgg ttttcgtcaa ggatcgtcaa      3780
     cggaagtagc agtattggaa ttggctgatg atattgctag ttcaatagat cgtaaactgt      3840
     ctgccggagt cgtcttttta gatctttcaa aggctttcga tacgataaat catcacattc      3900
     ttctccagaa gctagatgcg tatggtattc gaggagccgc aaatgattat cttcgcagct      3960
     atttgactaa ccgccaacaa caagttgtag tatctggaat aagaagcacc acctgttcca      4020
     ttagttgcgg tgtcccacaa ggcagcaatc ttgggccatt gttgttcttg atatacgtca      4080
     atgatatagc aaagctggaa ttaaaaggaa aactaagact gtttgcggac gacacagcga      4140
     tatcttacga agcaaccaat gtatacgagt tgagcgagga tatgtcaact gatctacata      4200
     tagttaccag ttatctggaa aacaacctat tagcgcttaa cttacaaaaa accaaaacga      4260
     tgctatttgg agctaaggat actcaggggc atccagtttt gactattaat ggagtcgtta      4320
     ttgaagaagt agaccaattc aaatatctgg gtgtgctaat tgatagccag ttgaagtggg      4380
     acgcccatat acgtgaagta gttgcaaagt gttcatcatt atgtgggatt cttcgaaggt      4440
     tatcatcgtt tgtaccacaa caggttctct tgaagatgta ctacgccttc atccacagcc      4500
     gataccagta cggtatatct gcttggggtt caacgtacaa tacgtacttg aaggaaatac      4560
     agatacagca gaatcgatgt atgaaagcca tttacagatt gccatatctg cagcctacaa      4620
     acactctgta cactgaaatg gagcacaata ttcttccgat agcaggactt tacacaatga      4680
     gggcaggaat aataatgttc aagatagttc acaacataaa cttgcaccac aactggattt      4740
     tcaataccgc tgctcaccaa tataggacca gacaggctca tctattacaa agaagtggat      4800
     tcagaactga gatagggagg aggagatttg agaatatggg gccaagaata tataatcaat      4860
     taccagaaag tataaaaaat tctcattcaa ttaatatgtt taggaaatgt ttaagaattc      4920
     acattaaaaa taatataaat aactttataa tacgctagaa gttagaattc cacagctagt      4980
     tcgctagaca atcataaacg accctttaaa agaactatgg ttcattaggg attgtgtata      5040
     atagactaag tgtgaatcta tgtgaaataa aatgaattga attgaa                     5086
//
ID   Crack-23_AAe repbase;    DNA;    INV; 4615 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-23_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4615
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1239-1239 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           748..1515
FT                 /product="Crack-23_AAe_1p"
FT                 /translation="MNSESRISLTELPEIFSSMFEEYSTRLVDKIVTGQEF
FT                 LSDKFDDIICQLQKLKTELKVLKAENDYLKQSLKVLNEQTNTVSSSLHQQE
FT                 VQIDTRLRKEISSNAIFLGVPRTSNENTTELVLNVCKTLGLNLDRSEIVSC
FT                 ERITSTLEGNNPIKVTFKNTHQKERIMIAKRQFGRLTASMVHGKRWQTGWN
FT                 QTIIVRDDLSPLSMELFRTLKKHQALLNIRYVWPGRNGVIFCKHSEGSKPI
FT                 SVKSRDDLNKLLNRK"
FT   CDS           1508..4459
FT                 /product="Crack-23_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TENKIQLQKICRIDSNLATIENNQSKNVYLESFDELI
FT                 LPTSFEGLKLLQINARGLNRFEKFDLLSECVRNLPVVVDVLLVGETWIKEE
FT                 RSRFYNIRGYSCVHSCRTTSAGGLAVFVKEEIEYEITANSIDLGCHYIGLK
FT                 LLTKPHAVYIHGFYRPPDYEFSRLITRIESAIAVLDTKSIQFVLGDMNLPI
FT                 NISDSRGIQTYLQLLAAYNMVVTNTIVTRPSSNNILDHVVADADNSHKITN
FT                 FTVDCNFSDHRYIFTLFHTKASKATKVYTKTITNYRRLDEQFQNYLNSFDF
FT                 RTLSPNDRLVAISENYTNLRQIHSSSRSVEVRIKNNCCPWFNLEIWELSKA
FT                 SRILYQRWKRNRQDQQLKVLLDLSNKKLAECKKRVKSAYYRKILSTDNPKN
FT                 LWKGINELIGKKSVKAKQHVLRINGIEITDPEKVGDAFNDFFSTVGQQQAR
FT                 NLASNGDINMFNTMDRCNLSLFLRPTSKAEVFSIISNLDATKATGIDGFPI
FT                 AALKQHSTHLSGILADCINDSISIGVYPECLKQSLVFPVFKGGDPMNPTNY
FT                 RPISVLPAVNKIFEKVIYIRFSSFLETTGMLYEHQFGFRQGSSTEVAILEL
FT                 VDEISTAVDKKSCAGSIFLDLSKAFDTINHEMLLKKLEAYGIRGVPLNIIR
FT                 SYLFNRYQQVVVNGMKGKACTVSCGVPQGSNLGPLFFLIYLNDISKLPLKG
FT                 KPRLFADDTAISYKGPNAERVVDEMTQDMELVTAYLENNLLALNLKKTKMM
FT                 IFSSLKCDKEICPDLVINGTLIEKVTEYEYLGVYIDERLSWDFHIRTTVSK
FT                 CSSLCGILRKLSKFVPAHVLMKIYYSFIHSRYQYGIAAWGSCNKVYIKPLQ
FT                 IQQNRCIKSILSLPYLFPTRDLYELPQHKVPPILGLHILQVGTSMYKIINE
FT                 QNIHHNWSFASAFHQHRTRYAHHLQRPGFRTEIGRRRFANVGPSIYNQIPE
FT                 EIKTAPTQFTFRRKLKQYILNNCRNLVIN"
XX
SQ   Sequence 4615 BP; 1488 A; 1001 C; 872 G; 1253 T; 1 other;
     gtctggcagc cctgctgtat tacagctgtt gtgatctgtg ctccgctttg aactagaaat        60
     ttgatctgaa atcactagat ttaaccaact gccacctcat cgcctgattc caatgctgct       120
     gttgcaccac tcgtgataat tgctattccg atgcgagtag aaccgcctga gaaatcacgc       180
     ataaaattca accatcgcca ccgctgttgc tgctagtgtt ctggttctga cagcttgaaa       240
     accaccgccc accgccgcca ctgcccgcaa atcccgaata agcccacagt tgacccaccg       300
     taaatcgcca ccaaacaacc actcctaccg ccaccccact gcaagtatcg ctccatcgtt       360
     attcatctct cctgctattg ctttgttgaa atagtamcgc tgccaaatta cgctaattca       420
     tcacgatttg tactatgcga caataaacga gttcttcatc ggttgtttta ttctgccgcc       480
     cgtcccccac cacccccaca acggtcgctg actgcatcaa tactactgca ttcgctgttg       540
     acgctgacga gtaaatcttc ctgcctgacg tcactacacc tgctcagttg ataaacaccc       600
     cactacaaag gtcgaccgtc aatcatcgtg tgtaagtacc tacaccattg tacagtacta       660
     cagcgcaact agtgtagggg cgtaaacaca atagggctca cttcagaccc agcagattca       720
     gcgccatctg ttggcgaaca ctcgaacatg aactcagaat cacgaattag cttaacagag       780
     ttgccagaaa tattttcttc aatgtttgaa gaatactcaa ctcggcttgt cgataaaatc       840
     gttacgggtc aagagttcct atccgacaag tttgatgata taatttgtca attgcaaaaa       900
     ttgaagacag aacttaaagt tctgaaagca gaaaacgatt acctcaaaca atcgttgaaa       960
     gtcttgaatg agcaaacaaa tacggtttca agttcattgc atcaacagga agttcaaatt      1020
     gatacacgat tgcggaaaga aatttcttcc aatgccatat tcctgggagt tccgcgaacc      1080
     tcgaatgaaa atacaacaga acttgtattg aacgtctgca aaacattggg gctcaattta      1140
     gacaggagtg aaattgtgtc atgcgaaaga atcactagta ctttagaagg caacaatcct      1200
     ataaaagtca ctttcaaaaa tacgcatcag aaagagagaa ttatgatagc taaaagacaa      1260
     tttggtcgtc taacagcatc aatggtccat ggcaagcgtt ggcaaaccgg ctggaatcaa      1320
     acaattatag ttagagatga tttgtcacca ttatcaatgg aattatttcg tacgctcaaa      1380
     aaacatcaag cattgttaaa cattcgttac gtgtggcctg ggcgcaatgg tgtcattttc      1440
     tgtaaacact ctgaggggtc caaaccaata tcagttaaat ccagagatga cctgaacaaa      1500
     cttttgaaca gaaaataaaa ttcagctcca aaagatatgc agaattgata gcaatttagc      1560
     aaccatagag aataatcaat cgaaaaacgt ttacttggaa tcattcgatg aactgatttt      1620
     gccaacctcc ttcgagggat taaagttatt acaaattaat gctcgaggat tgaaccgttt      1680
     tgaaaaattt gacctgctga gtgaatgtgt gcgaaatttg cctgtggttg tggacgtttt      1740
     gcttgtcgga gaaacttgga ttaaagaaga gagatccaga ttttacaata ttcgagggta      1800
     cagctgcgtt cattcttgcc gtacaacatc agctggcggg ttggccgttt tcgttaaaga      1860
     agaaattgag tacgaaataa ctgccaattc aatagatctt ggatgtcatt atattggatt      1920
     gaaactattg acgaaacctc atgcagtcta catccatgga ttttaccgtc ctccagatta      1980
     tgaattcagc aggttaatca cccgaatcga aagtgccata gccgttttag atacaaaatc      2040
     tattcaattc gtgttagggg acatgaattt gccaatcaac atctctgatt ctagaggaat      2100
     ccagacttat cttcagcttc tcgctgcata taatatggtt gtaacaaaca cgattgttac      2160
     gcgacccagc agcaataata tactggacca tgtagttgcc gatgcagaca actcccataa      2220
     aattaccaac tttaccgtgg attgtaactt cagtgatcat agatatatct tcactttgtt      2280
     ccacactaaa gcttccaagg ctaccaaagt gtataccaaa actattacta actacagacg      2340
     attggacgaa cagtttcaaa attatcttaa ctcgttcgac tttagaacac tgtctccgaa      2400
     cgatcgactg gtagcgatct ctgaaaatta cacgaatctt cgtcaaattc attcaagtag      2460
     tagatctgtt gaagtgcgta tcaaaaataa ctgctgtccc tggtttaacc tggaaatatg      2520
     ggaactaagc aaagcatcca gaatactata ccaaagatgg aaacgcaatc gacaggatca      2580
     gcaactaaaa gttcttcttg atctttcgaa caaaaaactg gctgaatgca agaaacgagt      2640
     aaagtctgcg tattatcgaa aaatcttatc gaccgataac ccaaaaaatc tctggaaggg      2700
     aatcaacgag ctgattggaa aaaagtctgt gaaagccaaa caacatgttc ttcgaatcaa      2760
     cggaattgaa atcacagacc ctgagaaagt tggtgatgct tttaatgact ttttttcgac      2820
     ggtcgggcaa caacaagctc gcaacttggc atcaaacggc gatataaata tgttcaatac      2880
     tatggacaga tgcaatctct ctctattttt gcgacctacg tcaaaggccg aggtattttc      2940
     aatcattagt aatttggatg ccacaaaggc aaccggaatt gatggatttc caatagctgc      3000
     gctgaagcaa cactctacgc acctttccgg catattagca gattgtatca acgacagtat      3060
     cagtattggt gtctatcctg aatgtctgaa gcagtcgcta gtgtttcctg tttttaaagg      3120
     aggagatccc atgaacccaa ctaactatag gcccatctca gttctacccg cggtcaacaa      3180
     gatatttgaa aaggtgatct acatacgatt ctcaagtttc cttgagacca ccggaatgct      3240
     gtatgaacat cagtttggat tcagacaagg atcatcaacc gaagttgcaa ttctggagct      3300
     ggtagacgaa atttcaactg ctgtggacaa aaagagttgt gctggatcca tattcttgga      3360
     tttatctaag gcattcgaca caatcaatca tgagatgttg ctgaaaaagt tggaagctta      3420
     cggcattcgt ggagttcctc tcaatattat cagaagctat ttgttcaatc ggtatcaaca      3480
     agtcgtcgtc aatggaatga agggcaaagc ctgcacagta tcttgcggtg taccacaagg      3540
     gagcaattta ggtcccttat tttttctcat ttatctaaac gatatatcaa aactaccact      3600
     aaaaggtaaa ccaagactct ttgctgacga tactgccatc tcatacaaag gtccaaacgc      3660
     ggaaagagtc gtagatgaga tgacacaaga tatggagctt gtcacggcat atttggaaaa      3720
     caatctgcta gccctaaacc tgaagaaaac caaaatgatg attttcagct cactcaaatg      3780
     tgacaaagag atttgtccag atctggtgat taatggtaca ctaattgaaa aagtgacaga      3840
     atatgagtat ctgggggtat acatcgatga gcgccttagc tgggacttcc acattcgaac      3900
     aactgtctcc aaatgttcat cactctgtgg aatcctacgg aaactctcca agtttgttcc      3960
     agcccatgtt ctgatgaaaa tctactactc tttcatccat agccgttacc aatacggtat      4020
     cgcagcttgg ggttcttgca ataaggttta tatcaaacca ttacaaattc aacaaaatcg      4080
     ctgtataaag tcaatcctaa gcttaccgta cctttttcca acacgtgacc tctacgagct      4140
     acctcaacat aaagtgccac caatactagg gcttcacatt cttcaagttg gaacttcaat      4200
     gtacaaaatc atcaacgagc agaatattca ccataactgg tctttcgcaa gtgcgtttca      4260
     tcaacaccga accagatatg ctcatcatct tcaacgaccg ggattcagaa cggagatagg      4320
     gcgacgtcga tttgccaatg tagggccgag tatatataat caaatcccag aagagataaa      4380
     aacagctccc acgcaattta cttttagacg gaaactaaaa caatacattc ttaataattg      4440
     cagaaatttg gtaattaact agtgataaga gtcatctgaa ttacaaacta atttactatt      4500
     agacaggtag gatactgaac aacacctttt aaagaacaat agttcagtag ggaatgttca      4560
     aaattattgt atcgtatttt ttatcataaa taaatgaaat gaaatgaaat gaaat           4615
//
ID   Crack-24_AAe repbase;    DNA;    INV; 4632 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-24_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4632
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1240-1240 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..1449
FT                 /product="Crack-24_AAe_1p"
FT                 /translation="MMYEDESDIICYVCEKSEVNSLLTIECANCSKCAHFR
FT                 CKKLFGKAVAKARKKPYLCSVECAKIHACTDEKSPALISEIRLLGQAISES
FT                 QKEAVMVRKALELTRMQLDTLVKTSKGIEDSQQFLSNQFDDLRAKFIEFRE
FT                 EIDVMKEENNKAREEFRDLQQKYHALLSSVDSMESKLRSVSQAAVANKVVI
FT                 LGLPLTDDEDLKAVVCDVGTAVGIELSPSVIENVQRIFSKRNQNSSVPILV
FT                 SFSNHATKEKLFECKRRYGALLASTVSRKFEGSADRVIIRDEMTIEARNLF
FT                 WEAKNMQAALNMKYIWPGRDGKVLLRRCDGGKVHEVGSKLQLLKLSEQLSQ
FT                 DIATVE"
FT   CDS           1521..4403
FT                 /product="Crack-24_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDNFYYDNLYCLNKNSQYINRPFSFKILQLNIRGMNR
FT                 LDKFDAVKEFLSLYSGQIDIVVIGETWVKAERKSLFQIEGFKSIFSCRENT
FT                 VGGGLAVFVKSKFEFEQVTCMHDEGLHHIHVRLKIQESDFNVHAVYRPPCF
FT                 DLARFYSRMESVCSIHRKSASSVVVGDMNIPVNLVHRGVVSEYQDLLSCYN
FT                 FAVTNTYPTRPASNNILDHVICSENLQRNVTNETVCTDISDHCFILSTLHL
FT                 KRPIRTINLEKTVVNYTKLNNAFQAAMQNMPQSNANVKLLYVLNTFQSLRE
FT                 KFSTVVKVQAKIKGSCPWMTFELWKLICIKDKVLKSCRKRPNDTGLQELLA
FT                 HVSRKVQYAKLWAKKNYYSNLFLASSPKNTWENINELIGRRKDSDNVVKLM
FT                 VDGQITSCGATIADKFNQFFSTIGPQLASTMNSSNEINKFNTLRLNNSTVF
FT                 LRPATEREVLLKINALDSKKCSGPDGISATFIKVHHEFFATLLTEVFNECI
FT                 SSGTFPDSLKIASVTPIHKDGSKEDVNNYRPISVLSMLSKLLEQLFVSRLL
FT                 SFLEDQHVLYRHQFGFRAGSSTWTATCELVDSIYSALDNRKISGVLFLDLK
FT                 KAFDTIDHRILLQKLEYYGVRGVALNFIRSYLTNRKQYATVNKSKSRLCPL
FT                 TVGVPQGSTLGPLLFLLYMNDLPMLKLNGKPRMFADDTSLSYEVDNPEQLI
FT                 RQMSEDMTQLQAYFTENLLSLNLSKSKYMIFRSTRQRIPDHGELSIGSQVI
FT                 EEVDEMKYLGLTFDPTLTWRGHVEKLRRHISSFCGVLWKIAKFVPMKQLNT
FT                 IYHAFIQSKLCYLVSIWGTAPKTVIKPLQVTQNRCLRIVYDKPRLFSTKIL
FT                 YEQADQSTLPILALCELQSLVCMQNLIKNPTAHHNFNLQRPDHLHNTRHQA
FT                 HLAVTRRNTENGKKAFDYRGKISYNSLPDTVKSEHSIFKFKKVVRRHIMSL
FT                 LERFII"
XX
SQ   Sequence 4632 BP; 1466 A; 897 C; 997 G; 1271 T; 1 other;
     ctggcaacac tgaaaatcat cgacctaagt gactaaattg gagtgcaaat tattacagta        60
     aattgtgatc gaaatcagat tagtaaaatc gtactattgc gatttgcttg aaggcgaagc       120
     tgttgtgctg gggtccacga tatagtttgg ctgaaaaaca taagtaccga cgttattctg       180
     gtaatgatag atttgcagta caactcacga tctgcattat acattatcac tcaatacgtt       240
     ctgcgatcta ttgaagtagt ggttggtgct gacggtcact ctggagtggt attacacact       300
     gatacctact gtcctatcat tgtttgcgat tggctcaaca catttgcgat ttgttttgat       360
     cggtcgtgtt aagtggtaag taccactgat ctgttcggtt gaatgatgta cgaagatgaa       420
     agcgatatca tttgttatgt ctgcgaaaaa tcagaggtca attcgttact aacaattgag       480
     tgtgccaatt gtagcaaatg tgctcacttc aggtgtaaaa agctgtttgg gaaagccgtc       540
     gctaaagcta ggaagaaacc gtacttatgt tcagtcgaat gtgcaaaaat ccatgcctgc       600
     actgatgaaa aatctccggc attaatttcc gaaatacgtt tgcttggaca ggctattagc       660
     gagtcgcaga aagaagcggt tatggtcagg aaggctctcg agctgacacg gatgcagtta       720
     gatactctcg tcaaaacaag caaaggcatt gaggattcgc aacagttcct atcaaatcag       780
     tttgatgatc tgagggcaaa atttatcgag tttcgtgaag agatcgacgt gatgaaggaa       840
     gagaataata aagccagaga ggagttcaga gatctgcaac aaaaatatca tgcgctgctt       900
     tcgtccgtag actcgatgga atctaaactg cgtagcgtga gtcaggctgc tgttgccaac       960
     aaagttgtca ttctcggttt gccgctcacc gatgatgagg acctaaaagc agtcgtctgt      1020
     gatgttggca ccgcagtagg gatcgagttg tctccatcag tcatcgaaaa cgtgcaacga      1080
     attttcagta aacgaaatca aaattcatcg gtacccatat tggtgtcctt ctctaatcat      1140
     gcaactaagg aaaaactgtt tgagtgcaaa cgcagatatg gagcattact tgcatccact      1200
     gtatcgagga agttcgaggg atcagctgac cgcgtaatta ttcgtgatga gatgacaatt      1260
     gaagcccgaa atctcttctg ggaagcgaaa aatatgcaag cagctctcaa tatgaaatac      1320
     atctggcccg gtcgtgatgg caaagtgtta ctgaggcgtt gtgatggcgg caaagttcat      1380
     gaagttggta gcaaactgca gttgctcaaa ttgtccgaac agctgtcaca ggatattgca      1440
     acggtagaat agccctctgg tctgtcctga tcacagaaat ttacgtcgtt atactgcaat      1500
     aaggttatct ctgaacatca atggataatt tttattacga taatctgtat tgtttgaata      1560
     aaaactctca atacataaac cggccattta gttttaagat tcttcagcta aatataagag      1620
     gaatgaacag gttagataaa ttcgatgctg taaaagagtt tctttcactc tactctggac      1680
     agatagacat agtagtgatt ggtgaaacat gggtcaaagc cgaacgcaaa tcgttatttc      1740
     aaatagaggg ttttaaaagc attttctcat gtcgcgagaa tacggtgggt ggcggactcg      1800
     cagtcttcgt taaatccaaa ttcgagtttg agcaagtaac gtgtatgcac gatgaaggtt      1860
     tgcaccatat tcatgtacgt ttaaagatac aggagtccga tttcaatgtg catgctgttt      1920
     acagaccacc atgttttgat ctagcacgtt tttatagtag aatggagtca gtatgctcga      1980
     tacaccgaaa atccgcatcg agtgtggttg ttggggatat gaacattcca gtaaaccttg      2040
     tacatcgagg agtagtaagc gagtatcaag atcttctcag ctgctataac tttgcagtta      2100
     ccaatacgta tcccaccagg ccggctagta acaatattct cgaccacgtc atctgctcag      2160
     aaaatctgca aagaaacgtt accaatgaaa ccgtttgcac ggatatcagc gatcactgtt      2220
     tcattttgtc tacgttgcat cttaagaggc ctatcagaac gattaatttg gagaaaactg      2280
     ttgttaatta caccaaattg aacaatgcat ttcaagctgc catgcaaaat atgcctcaga      2340
     gtaatgcgaa tgttaaactt ttgtacgtgc taaacacatt tcaatcgctc agagaaaaat      2400
     tttccacggt ggtgaaagta caagcaaaaa tcaaagggag ttgtccatgg atgacttttg      2460
     agttgtggaa attgatatgt ataaaagaca aagtcctgaa gagctgtcgg aaacgtccca      2520
     acgatacagg cttgcaggaa ttactcgctc acgtctccag aaaggttcaa tatgcgaagt      2580
     tatgggctaa gaaaaactat tacagcaatt tgtttctcgc atcgtctcca aaaaacacct      2640
     gggaaaatat taacgaactc ataggtcgtc gaaaggatag tgacaacgtt gtcaaattga      2700
     tggtagacgg acagataaca agttgtggag caaccattgc cgacaagttc aaccagtttt      2760
     tcagcaccat cggaccccag ctggcttcga caatgaattc aagcaatgaa atcaataaat      2820
     tcaatacgct acggctcaac aacagtactg tattcctacg tccagcmaca gaacgtgaag      2880
     ttttgctaaa aataaacgcc cttgacagca aaaagtgcag tggaccggat ggaatttcag      2940
     caactttcat taaagttcac catgaattct ttgcaaccct attgaccgaa gtgttcaatg      3000
     aatgcattag ctctggaaca ttcccagata gtttgaaaat tgccagtgtg acaccaattc      3060
     acaaggatgg gagtaaagaa gacgtgaata attacagacc tatttcggtg ctgtcaatgc      3120
     ttagtaaatt gctagaacag ctttttgtaa gcagactttt gagcttctta gaagaccagc      3180
     atgttttgta taggcaccaa ttcggattcc gtgcaggatc aagtacctgg actgctacct      3240
     gtgagcttgt agacagtatt tattcagccc tagacaatag gaaaatctct ggagtactat      3300
     ttttagacct gaagaaggcg ttcgatacca ttgaccacag gattttgttg cagaagctgg      3360
     agtattatgg tgtaagggga gttgctctaa atttcatccg aagctattta accaatagaa      3420
     agcagtatgc gacagtgaac aagagtaaaa gcaggctttg ccccctgacc gtaggagtcc      3480
     cccaagggag cactctggga ccgcttctct ttctactgta catgaacgat ttgccaatgt      3540
     taaaactcaa tggtaaacca cggatgtttg ctgacgacac atctttgtct tatgaagttg      3600
     acaatcccga gcaactgata cgacaaatgt ctgaagatat gactcaacta caagcatact      3660
     tcactgaaaa tttgttgtct ttaaatcttt cgaaatcaaa atatatgatt tttcgctcaa      3720
     cgagacagag gattcccgat cacggtgaat tgtcaatagg ctctcaagta attgaggagg      3780
     ttgatgagat gaaataccta ggcctgacgt ttgacccaac tctgacatgg cgtggacacg      3840
     ttgagaagtt aagacgtcat attagttcct tttgcggagt cttatggaag attgcaaagt      3900
     ttgtaccaat gaaacagcta aacacaattt atcatgcttt tatccaatcg aaattgtgtt      3960
     acttggtatc aatttggggt acagctccaa agactgtcat caaacctctg caggtcaccc      4020
     aaaaccgatg cctcaggatc gtgtatgaca aacctcgatt gttttcaaca aaaatactgt      4080
     atgaacaagc tgatcaatca acactcccaa tcctagcact atgtgaacta caatccttag      4140
     tatgtatgca aaacctcata aagaatccaa cagcacacca taactttaat ctacaacgac      4200
     cagaccattt gcataacact cgtcatcagg ctcatctggc tgtaacccgc aggaataccg      4260
     aaaacggtaa aaaggctttc gactatagag gaaaaatttc gtataatagt ttaccagata      4320
     ctgtgaaatc cgaacatagt attttcaaat tcaaaaaggt agttagacgt cacatcatga      4380
     gtttgttaga acggttcata atatgatctg atcgatgatt tgagctagtt agaagttaga      4440
     agagaccctt aaaaggaatt agtttccact gggtttcaac gtcaatgtag agaatacccc      4500
     acaaatgtat agcatatatt caatgtatta tgattcaata aaaaaaaata aatcagttgc      4560
     gaccattacc agggagatca acctcaagag ctctctggtg tgggggagag tggagggcgc      4620
     aaaaaaaaaa aa                                                          4632
//
ID   Crack-25_AAe repbase;    DNA;    INV; 4533 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-25_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4533
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1241-1241 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1435
FT                 /product="Crack-25_AAe_1p"
FT                 /translation="MSENGDTEDTIVCSICKKQELDSTRIIECSVCFNSMH
FT                 FRCKRIFGTGITRARQQSSFVCSPNCAEIYGRMNGNPNFEKLVAELNESVR
FT                 ASIKQEMEVINAKIDTSQQSMMKELHSFANRFDELKIENDNLKKTVASLTE
FT                 KYDSLMDSMITLETEVNRSSCSAMEKNAVILGLPMTENEDTKDVFQQLCSS
FT                 LSFDLPENAVLSAKRMVSKNAKGGNPPIKIVFTDSSIKERFFATKKQHGKL
FT                 LSTVVNGMPVNGKPGNVLVRDELSSLGLSMLREVRGMQDALGIKYVWPGRG
FT                 GVILLKRNDGAKVEMIRNRQDIDRLGQKLNKRTLSDSSPRSLNNSAVNEPS
FT                 SKRTCP"
FT   CDS           1489..4383
FT                 /product="Crack-25_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYFSNSYYDSFSSYNASKNGSKNGNXFKILQINIRGL
FT                 NNTTKFDYLLECLDSCKERIDVIVISETWLKKHKTALFEISGYNSVFVCRA
FT                 ESSGGGLAVFVRKEHRTQIRTVQNIPDFHHIHLEITNMSRLLNLHAFYRPP
FT                 SQSHEPFLKKLEDIISSCPPSNDCIIVGDINIPVNKPDVPMVKHYQSLITS
FT                 YNYAITNEHSTRSASGSILDHSLCSNSLLQRIHNDTVFHDVSDHNFVITTI
FT                 SCTFKSFRTKLEKKIVNHRKVNNEFSEFLQNIPQELGPVEKLSLIINEYKS
FT                 IKERNSKTIFVNAQLKIPLCPWMNVDVWKLRKIKDNLLTKSKQQPNNSNVK
FT                 ELLKHVSNKLVNAKRIAKNQYYHNLLNTPNQKLLWSRLNELLGRNVKQDNL
FT                 VEIEKNGELVVGDVEKSSAFNEYFCSIGSDLASRIDTDRDITKFNSIKVNN
FT                 ASIFLRPASSQEVTILINNLNSKKARGPDDFPADLVKCHHLFFAQLLRDVF
FT                 NYSVETGVYPDSLKIARVVPVFKKGDRKNIENYRPIAVLSVFNKIIEQLLA
FT                 SRLNDFFDRHDILYHMQYGFRSGSSTSNVLCELVDSLYASFEKRNMVGAVF
FT                 IDLKKAFDTLDHEVLLAKLAAYGVRGQANNLLRSYLSERKQFVVVNQISSG
FT                 SKCIPIGVPQGSNLGPLLFLIYMNDLPHINLRGVVRLFADDTSIFYEGKTQ
FT                 AEIKSDAEEDLRTLKSYFQTNMLSLNISKTKFMLFRSTHKMISNPTGLTID
FT                 DETVPYVDSFKYLGLIMDSSLTWQHHIDQLSITLSRMCGLIRKLTDFLPFK
FT                 ALEKLYFAFFHSHLQHLAIIWGSASNERLKRIQVLQNRCLKLIHKLPQLYS
FT                 SALLFTDSKIKTLPIRALYHQQLMIHTYSVVNRQDLLTNMRFSRRTHSHLT
FT                 RRANHLPIPRVRTNYGKRSFGYLGPVLFNRLPQTLKNYTPSSKFKKELKMY
FT                 LKSNVTLYLR"
XX
SQ   Sequence 4533 BP; 1471 A; 892 C; 838 G; 1331 T; 1 other;
     agtctggcaa ctctggaaac taattggtgg ctattttttt gtgcttttaa ttttcatatt        60
     accagttgaa aaaaacgctt ttaattcgtt gttttggtga aatagtgaag aatatacatc       120
     gaaccacatc ctaaaagtcg atgaggagga aaactgcacg catctcccag gtttttcatc       180
     acaaaagtta tggtgaaatt cgctaattat actttgtagc gcattgtact tgaataattt       240
     cgagcagttt catgcaccaa attaccacag tattctcttc gtctctgtat ccctattgtc       300
     tatagtcgtc tgtgtgtagg gtttcatcca ttgtgtgaca tgatatccat attctagttg       360
     ctatagcatg taaacatctt tcgtcaaaat gtctgaaaat ggtgatactg aggatacgat       420
     cgtctgttcc atctgcaaga aacaggaact ggattcaact agaatcatag agtgctcggt       480
     atgcttcaac agtatgcatt ttagatgcaa gcgaatcttc ggcaccggca tcaccagagc       540
     gcggcagcaa tcttcatttg tttgctcacc taactgtgct gagatctacg gtcgtatgaa       600
     tggaaatcct aatttcgaaa agctggtagc tgaactgaat gaatccgtac gtgcttcgat       660
     caagcaagaa atggaagtca tcaatgcgaa gatcgataca tcccaacagt ctatgatgaa       720
     agagttacat tccttcgcaa accgtttcga tgagctgaag atcgaaaacg ataatctcaa       780
     aaagaccgtg gcatcgttga ccgaaaaata tgactcgcta atggacagca tgatcacact       840
     tgaaacagaa gtcaacagat catcatgtag tgctatggaa aagaatgctg taatcttggg       900
     cttaccaatg actgaaaacg aggacactaa ggatgttttc caacaactgt gtagttctct       960
     atcgtttgac ttgcctgaaa atgccgtcct gtcagctaaa cgaatggttt cgaaaaatgc      1020
     gaagggggga aatcccccta ttaaaatcgt cttcaccgat tcgagcatca aagaacgttt      1080
     cttcgcgact aaaaagcaac atggtaagct attatccact gttgtgaatg gaatgccagt      1140
     taatggtaag cccggtaacg tactggtacg cgacgagcta tcttcccttg gactttccat      1200
     gctgagagaa gtacgtggta tgcaggacgc gttgggaata aaatatgtat ggcctggtcg      1260
     cggaggagtt attcttttga agcggaacga tggggcaaag gtggaaatga ttcgtaatcg      1320
     tcaagatatt gatcgtttag gacagaagct caacaaaagg accttgtctg attcttctcc      1380
     gagaagcctg aacaattcag ctgtcaatga accctcgtca aagcgcacat gcccataaaa      1440
     tatccttagt atcaccaatt ttctcaaatt atatttgtaa atcttataat gtatttttca      1500
     aattcttatt atgattcgtt ttcgtcttat aatgcgtcca aaaacgggag taaaaatgga      1560
     aatwgtttca aaatattaca aataaatata agaggtttga acaacactac aaaattcgat      1620
     tatctcttag aatgcctcga ttcgtgcaaa gaaagaatcg acgttattgt tattagcgaa      1680
     acatggctaa aaaaacataa aacagctctt tttgaaatca gcggttacaa ttctgtgttt      1740
     gtctgtcgtg ctgaatctag tggaggggga ttggcagtat tcgttcgcaa agagcatcga      1800
     acacagattc gaactgtaca aaatattccg gattttcacc acatccacct tgaaattaca      1860
     aacatgtctc gattgttgaa tttgcatgca ttctacaggc ctccgtctca aagtcatgaa      1920
     ccgtttctta agaagttaga ggacataatt tcaagttgtc ctccgagcaa tgattgcata      1980
     atagtcggtg acattaacat tcctgttaat aaaccagatg ttccgatggt taaacactat      2040
     caatctctta ttacttcata caactatgct attaccaatg agcactcgac aagatctgcg      2100
     tctggatcaa tactcgatca ttcactatgc tctaatagtc tgctacaacg catacacaat      2160
     gatacagttt ttcacgatgt gagtgaccat aactttgtta tcactacgat cagctgtaca      2220
     ttcaaatcat ttcgcacaaa attggaaaaa aaaattgtaa atcaccgtaa ggtcaacaat      2280
     gagttctctg agtttctgca aaatattccg caggaactag gacccgtgga aaagctttca      2340
     ttgattatca acgaatataa atccataaaa gaacgtaact ccaagacaat cttcgtgaat      2400
     gctcaactta aaattccctt gtgtccctgg atgaacgtag atgtttggaa attgcgtaaa      2460
     ataaaagaca acttgttaac caaatctaaa cagcaaccga ataattcgaa tgtaaaagag      2520
     cttctaaaac acgtttcaaa taaactcgtt aatgccaaac gtattgcgaa aaatcaatat      2580
     taccacaatt tactgaacac accaaaccaa aaattgcttt ggagtcgttt gaacgaattg      2640
     cttggtcgaa atgtcaagca agacaatctt gtcgagatag aaaagaacgg ggaattagtt      2700
     gtaggcgatg ttgaaaaaag ttcagcattc aatgaatatt tctgctcaat aggatccgat      2760
     ttagcttcta gaattgatac cgacagagac atcactaaat tcaattctat caaagttaat      2820
     aatgcatcaa tttttttgag accagccagt tcgcaagagg ttacaatcct aataaacaat      2880
     ctcaattcaa aaaaggcacg aggcccagat gactttccag ctgatttagt aaaatgtcac      2940
     catctattct ttgcccaact actacgtgat gtgtttaatt actctgttga gacaggcgtt      3000
     tatcctgatt ccttgaagat cgccagagtg gttccagtgt ttaaaaaagg agacagaaaa      3060
     aatattgaga actatcgtcc gattgcagta ttgtcagttt tcaacaaaat aatagagcag      3120
     ctattggctt cccgcttaaa tgattttttt gatcggcacg atattttgta tcatatgcaa      3180
     tatggattta ggtctgggtc cagtacgtca aatgtgctat gtgagttagt cgattctctg      3240
     tacgcatcgt ttgaaaaacg gaatatggtt ggtgctgttt tcatcgatct taaaaaggct      3300
     ttcgacactc tggaccacga agttttacta gccaagctag ctgcttacgg tgtacgtggt      3360
     caagcaaata atcttcttcg aagctattta tcggaaagga agcagttcgt agttgttaat      3420
     caaatatcca gcggttcaaa atgcattcca atcggtgtac cacagggcag caacttgggg      3480
     ccactgttgt tcttaatata catgaacgac ctgccccaca tcaaccttag aggagttgtc      3540
     agactatttg cggatgatac atctatcttt tatgaaggta aaactcaagc agagattaaa      3600
     tcagatgctg aagaagactt gcgtaccctc aaaagctatt ttcagacaaa catgctttca      3660
     ttaaacattt ctaaaaccaa attcatgtta tttagatcaa ctcacaaaat gatatcaaac      3720
     cctacaggac tgactataga cgatgaaaca gtgccatatg ttgatagttt caagtacctt      3780
     ggacttataa tggattcttc cttaacgtgg caacaccata ttgatcagct atcaattaca      3840
     ctttcaagaa tgtgtggatt gatacgaaaa ctaactgatt tcttgccttt caaagcacta      3900
     gaaaaactat attttgcatt cttccactct caccttcagc atctcgcaat catttggggc      3960
     tctgctagta acgaacggct aaagcggatc caagtcctac agaatcgctg tctaaaattg      4020
     atacataagc ttcctcagtt gtattcgtct gctcttcttt ttacagatag taaaataaaa      4080
     actttaccga ttcgtgctct ataccaccaa cagttgatga tccatacgta cagtgtagta      4140
     aatcgacaag atttactcac taacatgcgt ttttcaagaa gaacacacag ccatttaacc      4200
     cggcgagcca atcacctacc gattccaaga gtgcggacta actacggaaa acgaagtttt      4260
     ggttacctag gacctgtttt gttcaacaga ctacctcaga cgctaaaaaa ttatacaccg      4320
     tcatcaaaat ttaaaaaaga attaaaaatg tacttaaaat ctaatgttac tctatactta      4380
     agataaagcc atcaatgttt cacatcagtg taaaataatc ccccttcaaa gagcttaaag      4440
     ctcactgggg gctacaaatc actgtaatta accagttgaa tgcttgttat gtcaattatg      4500
     tgtaaaattt atatgttaat aaatgttaat aaa                                   4533
//
ID   Crack-26_AAe repbase;    DNA;    INV; 5566 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-26_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5566
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1242-1242 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           675..1661
FT                 /product="Crack-26_AAe_1p"
FT                 /translation="MEKSKVICKECNKVELDSNKLISCMYCFSHTHLKCKN
FT                 ISANAARRLKEGMFFCTTSCSEYYKRIIQIKDSKPSITSELNNDIQTVVSK
FT                 ISEEMLSVRSEVRSITTAIEKSQDFLAEKFDFIMSDFKAIKAENECLKLEI
FT                 AELKRLHSSLASTVHTLEYKVDKSDKNVNSNHAVITGLLCTPNENVVELSH
FT                 KVFEKVGVKLSADSIVSAERIFQTIKPNSTAPIRVVFKSKADKERIIKKKF
FT                 ETGNLKSTAIDNRFIINGKPSNVNIRDELTPLSLEILKALRSCQEKLGIKY
FT                 VWPGRDGAILVKQSENCDIEIIRNRADLNDFIRCCSK"
FT   CDS           1917..4787
FT                 /product="Crack-26_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QQDYRNIHRWAPISDTGSTSLKILQWNVRGLNDLQKI
FT                 DSILQFLDELNVPVHVIVISETWLKCGNTSLFNIRNFDPIYSCRESSSGGL
FT                 AVFIRKTLSHKVLENLVDDGLHHISIEIKVKGLYYEIHGVYRPPCFEFNRF
FT                 HDKMETWLQKSSVNRPCLIVGDMNVPINLVNNNVVVKYRNLLESFGFICTN
FT                 SFITRPLSSNILDHIICQSEYAHRLTNYTVLNDASDHLPIISSFNLAKPFD
FT                 KIILTKKIIDYRKLNFDFKNYVDSIGVVDNVSNCLEGIIRNYKLIYDRCIK
FT                 IVSKEAKIKGTQCPWMTFDLWYLIKLKSRYLKKTKRHPLDEQTKIMLEHIS
FT                 KKVDRLKKTCKKKYYENILSNTTHSKLWKNINSLFGLSKSENKICLTVNGT
FT                 EVENDQHTCEILNNYFSSIGSNLADEVSLQNTADPYSAINCIQESIFLQPC
FT                 SENEVTLLINDLNSKKACGYDNIPARLIKENCSTFSKILCQCFNTMLENEI
FT                 YPDCLKIAKVVPVFKAGDPHSPDNYRPISTLSVFNKIFEKMLVNRLLSFLK
FT                 RHNIIYKLQYGFRQGCSTTTAVTELVDSIINEIDAKKTVGALFLDLKKAFD
FT                 TLNHNILLGKLERYGVRGVALNLIKSYLSNRQQYVSIGDYSSDLREISIGV
FT                 PQGSNIGPLLFLIYINDLGNIALNGTPRLFADDTAIFYPCANPNLMINQID
FT                 EDLLLLKYYFANNLLTLNLSKTKFMVFRSARKILPHLTEPKIGTTSIEYVT
FT                 SFKYLGVHLDSTLSWEVHIKHVERKVASLCGIVRKVVSFIPRHVLIKFYYA
FT                 HIHSRLQYLVSVWGRACKSKLIKLQVLQNRCVKLIFKLPILHPTLELYSNE
FT                 LHNILPLLALCELQTLLLVHDILHNPNVHCNLVMDGGNRPHNTRQHGHLTR
FT                 IRAVTNLGQKRISCVGPVRYNSLPIELKEIINRSLFKTRLKKYLKTKINDF
FT                 LL"
XX
SQ   Sequence 5566 BP; 1826 A; 880 C; 934 G; 1926 T; 0 other;
     tctgtgtacc cctgttttga attaaatttc aaagtgaatt tgtgaacatt aaatcatttg        60
     ctgctcctct tggattgaat aatattacta tcgtgttgta taactaaaaa aacagtgtta       120
     caattagtgt attacagcta aaatcgtaat cggtgcaaac tttgtttctt gccgtaatta       180
     aaacaaagcc agtggtgtga atacacattc aacagtttat ccaagctagt attcgtcttg       240
     ttgtgttgca catgtgttct atccagtgtc ctctatagtg attgcataca gtatgttcta       300
     ctacttcatt gttgtgttca atatttgatc acactttcat gcaagtatat cataagcgta       360
     gctggtggtg ggctctacaa actacacgtg ttgcaaaaat ataaataaaa aatggaatga       420
     tatgttttta attttttatt ttttttttct tagagcgata tatatttatt ttattttatt       480
     tattttttta tttatttatt ttttacacta attgttattt attttgatcg atatttattt       540
     tccttgttat ttattttgcg tgtttgttaa cttattttga gacttatatt tatattatta       600
     ttattattat tttttaacct acatgttttg aacagacttc tttgatattt taaagtgttc       660
     ctacgtccgc gattatggaa aagtccaagg taatttgtaa agagtgtaat aaagtcgagt       720
     tggattctaa taaattaatt agttgtatgt actgcttttc acatactcac ttaaaatgta       780
     aaaatatatc tgcaaatgcc gctcgtcgtc ttaaagaagg tatgttcttt tgtacaacat       840
     cttgttcaga atattataaa cgtatcatac aaattaaaga tagcaagcct tctattacat       900
     ccgagctcaa caatgatata caaactgttg tgtcgaaaat ctctgaagaa atgttgtctg       960
     ttagatcaga agtgcgatct atcactaccg caattgagaa atcgcaagat tttcttgcag      1020
     aaaaatttga ctttataatg tctgatttta aggccattaa ggctgaaaat gagtgtctca      1080
     agctagaaat agctgagctg aaaagattac attcgtcact agctagtaca gttcatactc      1140
     tcgaatacaa agtagataag tccgataaaa acgttaattc aaatcatgct gtaattactg      1200
     gcttgctttg tactccaaac gaaaatgttg ttgaattgtc acataaagtg tttgaaaaag      1260
     ttggggtaaa attaagcgct gactcaattg tttccgctga gcgaatattt caaacaataa      1320
     agcctaactc aacagcaccg ataagagtgg tttttaaatc taaggcagat aaagaaagaa      1380
     ttattaagaa aaagtttgaa acaggaaatt taaaatctac cgctatagac aatcgattca      1440
     ttattaacgg gaaaccaagt aatgttaata ttcgcgatga gttgacacct ttatctttag      1500
     aaatcttgaa agctttgcgt tcttgtcaag aaaaacttgg aatcaaatac gtttggccag      1560
     gtagagatgg tgcaatctta gttaaacaaa gcgaaaactg tgatatagaa ataattagga      1620
     atagggcaga tttgaatgat tttattaggt gttgtagtaa ataaaaccat cgttttcaat      1680
     tgtctttctg tgttttatta ttattcttag tttaatggcc catttaaaaa aattattctt      1740
     gtgatagtat tgacgatttt aataatatgt gtaggcagtc tagcatcgaa tattaatgtt      1800
     ttttaattta tgagatttgg tgcaggtgag gacatgcttt taggagcgtt ttaatgaaag      1860
     tcgtttcgtg gattactggg gaactcatcg ctttgaacgt agttgtgtca ctttaacaac      1920
     aagattatag aaacattcac cgttgggccc ctatatccga tacaggatca acgtccttaa      1980
     agatattaca atggaatgta agagggctaa atgatcttca aaagatagat agtattctac      2040
     agtttttaga cgaattaaat gttcctgttc atgttattgt aattagtgaa acctggttaa      2100
     aatgtggaaa tacctctttg tttaacataa ggaattttga tcccatttat tcttgcagag      2160
     aatcttcatc aggtggtttg gctgtgttta ttcgcaaaac gttatctcat aaagtgttgg      2220
     aaaacttggt tgatgatgga ttgcatcata taagtatcga aattaaagta aaaggcttgt      2280
     attatgaaat acatggtgtg tatcgccctc cttgttttga gtttaaccgt tttcacgaca      2340
     aaatggaaac atggttgcaa aagtcctctg taaatcgtcc ttgtttgatt gttggtgata      2400
     tgaatgtccc cattaatctg gtaaataaca atgtggttgt aaaatataga aatttattag      2460
     aatccttcgg ctttatatgt accaatagct ttattacaag gcctttaagc tctaacatac      2520
     tagaccacat aatctgtcaa tctgaatacg cacatcggtt aactaactat actgtcttga      2580
     acgacgctag cgatcatttg cccataatat caagtttcaa tctggccaaa ccatttgata      2640
     agattatact aacaaaaaaa atcattgatt atcgtaagct aaactttgat tttaaaaatt      2700
     atgttgacag cattggagtt gttgataatg tgagcaattg tcttgaagga atcattagga      2760
     actataaact gatttatgat aggtgcataa agatagtgtc aaaggaagca aaaataaaag      2820
     gaacccaatg tccctggatg accttcgatt tgtggtattt aattaaactt aaaagtagat      2880
     acctaaagaa aactaaacgg catcctttag atgagcaaac aaagatcatg ctagaacata      2940
     tttcaaaaaa agtagatagg cttaaaaaaa catgtaagaa aaaatactat gaaaatattc      3000
     ttagtaatac aacacattct aaactttgga aaaatattaa ctctctattt ggactttcta      3060
     aaagtgaaaa taaaatttgc ctgactgtaa atggcacaga agttgagaac gaccaacaca      3120
     cttgcgaaat ccttaacaat tatttttcca gtattggcag caaccttgct gatgaagttt      3180
     cattacagaa tacagctgac ccttattctg ccatcaactg catacaggaa tctatctttc      3240
     ttcaaccttg ttctgaaaat gaagtcacac ttttaataaa tgatttgaat tcgaaaaaag      3300
     cttgtggcta tgataacatt cctgctaggc ttatcaaaga aaattgttcc actttttcta      3360
     aaattttgtg ccagtgtttc aatactatgc tcgaaaatga aatatatcct gattgcttaa      3420
     aaattgctaa ggtcgtccca gtgttcaaag cgggtgatcc gcattcgccc gacaactatc      3480
     gtcccatatc aactctctct gttttcaaca aaatttttga aaagatgtta gtcaatcgct      3540
     tattatcctt tttaaagagg cacaacataa tttacaaatt acaatacggc tttagacagg      3600
     gttgtagtac tactactgct gttacagaac tcgtcgactc cattattaat gaaattgatg      3660
     ctaaaaaaac tgtgggagct ctatttttag atttaaagaa agcattcgat acgttaaatc      3720
     ataatatttt attgggtaaa ttagagcgat atggtgtcag aggcgttgcg ttgaatttaa      3780
     taaaaagtta tttatccaat aggcaacaat atgtatcaat tggcgattat agtagcgatc      3840
     tgcgtgaaat ttcgataggt gtcccccaag gaagcaatat tggaccactt cttttcttaa      3900
     tatatattaa tgatttagga aatatagcct taaatggaac tccacgatta tttgcagatg      3960
     atactgcgat attttatcct tgtgcaaatc ccaatttaat gattaatcag atcgacgaag      4020
     acttgttgtt gctaaaatac tattttgcaa ataatttgtt aaccttaaat ctgtcaaaaa      4080
     ccaaatttat ggtgttcagg tcagcgcgca aaattttacc tcatcttaca gaacccaaaa      4140
     ttggaacaac aagtattgaa tatgttacct cattcaagta tctaggagtt catcttgatt      4200
     ctactctatc atgggaagtt catataaaac acgttgaaag aaaagttgcc tctttatgcg      4260
     gaatcgtacg aaaagttgtt agttttatac ctcgccatgt tttgataaaa ttctactacg      4320
     ctcatattca ttctcgtcta caatatttag tatctgtatg gggtcgcgct tgtaaatcca      4380
     aacttataaa actacaagta ttacagaata gatgcgtcaa attaattttc aaactgccaa      4440
     ttttgcatcc caccttggaa ttatactcaa acgaactcca taatattctg cctttactag      4500
     cattatgtga attgcaaaca ctccttttag ttcatgatat tcttcataat cctaatgttc      4560
     actgtaattt agtaatggat ggtggtaacc gaccgcataa taccagacaa catggtcatt      4620
     taacgcgtat aagagctgtt actaatttag gtcaaaaacg catttcatgc gttggtccag      4680
     tgagatataa tagtttacca attgagctta aagaaattat caatcgaagt ctgttcaaaa      4740
     ctcgtctcaa aaagtactta aaaactaaaa ttaatgattt ccttctataa aaatcagaac      4800
     catcacaaaa ctactacatg acaatttttt tttcttgccg ttgtcaaatt attattacta      4860
     tttattatct tttggtgttg gtgccttcga ataagctgca aatatcgcgt ttttttaagt      4920
     tcttgtttta gtagaaaagt atttcgtaat atatgcatga ttcaaatttc tgaacgccat      4980
     gcctagaaaa cacagtgata caacagtagc taacctggca ttttagatag aaaaatcctg      5040
     tgaactcaga tgacacccat agttagactg gcagcttgcg ggtgccggat aactggtatc      5100
     tttatgtgtt ctacaatgtt tttcttgatt gctagaacaa actacaaacg tttcacggta      5160
     aactctagaa gcacaccatc agttatttgt tgctatgcat gttacaaatt taaagtcgaa      5220
     taaatgaggc ttcatacttg tttggccttt gcgtttgcag ttttcgatga tcatcaaaat      5280
     aacatttaat catctatgaa tcccttaaaa ggagatttct ctccactggg atatcgtata      5340
     gattattgtt taaattagaa ctcgctcatt tttctttttt gtatagtttt tagcttgttt      5400
     tcatctcagc tcataaacat agatttttcc tcttattaaa aagtgttgct caatttagct      5460
     gagaatagat gagtccacta ccaggaggct cttctctcaa tattttgttt ttgtgagatg      5520
     agctttttgg tgtgggggtg agtggcgggt aaaaaaaaaa aaaaaa                     5566
//
ID   Crack-27_AAe repbase;    DNA;    INV; 5183 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-27_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5183
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1243-1243 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           819..1865
FT                 /product="Crack-27_AAe_1p"
FT                 /translation="MLNDQTDDAVYCVECRKQENDLSQLITCLYCYSNAHF
FT                 TCRNIIGSAVRKMKKNMYFCTSKCSDIYKKITDMQNNRTPMIDRLSSELQK
FT                 SVVTVVSAQLKEVKAEVNSFVKAIEHSQQFISAKFDEFLNDFLKLKTENDH
FT                 LKSEVEGLRHELSALKISVNKLEFNDDRANKDSLSKNAILLGVPVQENEQV
FT                 SSIVAKVADCIGLDLPGDAIESASRLHGQGSTSNKHVPIRIVFKHKSMKES
FT                 FFSKKKIFGKLSSAVIDQSMTVNGMPTNIVIRDELTPLSLELLREIRMLQK
FT                 KMSLKFVWTGREGAILVKKDENTNTISIKNRNDLENFAKRSVFHLSSNSTL
FT                 STNSLC"
FT   CDS           1931..4828
FT                 /product="Crack-27_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MATINNNNFHENIDDLNECYPTDLSSSKHLRILQWNI
FT                 RGLNDFEKFDCMLVMLDQLHFPVDIIVIGETWLKQDNVSLYNIPGYKSIFS
FT                 CRHSSNGGLVVYVKNSISFNVQCNVHLDGFHHIHVEVTLNSRIYDIHTFYR
FT                 PPSFDVNHFLNIFENILDKSNHIRPCFLLGDVNVPMNAYSNNVVMKYRALL
FT                 ESYGFVCSNTFPTRPISSNILDHAICRIDDLPRIKNDTISTEQSDHCIVIT
FT                 SFKLFEEREKLTLTKKVVDHQKLNRDFTAFLQNYGAVQDGESCLLDVVSKY
FT                 KSLNEKYSKILTKNVSAKSQFCPWMNFNLWHLIKMKNNYIKRLKRNPDDNH
FT                 LKALLKHVSNKVSTSKKNCKRIYYDNLLNNTPHSKLWKRINCIFGKSSKAD
FT                 TIVLLDNGAKIYDNQLTCEIFNNFFSNIGQHLANSIQIDATIDPLSYLRRV
FT                 PNSIFLTPATVNEVTLLINELKRKKCGGPDNITADIVKNNSVCLSRILSEV
FT                 FNKILETGCYPKCLKIARVVPVFKSGDASDINNYRPISTLSTFNKIIEKLL
FT                 INRLVPFLNQHNVFYKYQYGFRQGSGTETAILELLDDVIKNIDNKKVVGSL
FT                 FLDLRKAFDTLNHTILLKKLEAYGIRGLANKVLQSYLSDRMQFVSIGDSVS
FT                 SLRPITVGVPQGSNIGPLLFLLYINDLCRLPLKGVPRLFADDTALFYPRFD
FT                 VHMVVKDINDDLKILSKYLASNLLSLNISKTKYMIFHSPRKRIQXHNVVML
FT                 NSCCIEEVKSFKYLGIILDATLNWSEHIEYIEKKTSSLCGVLRKVSYFVPR
FT                 SILQKFYFAHIHSAFNYLIVAWGRACKSRLKKLQTIQNRCLKTILKKPFLF
FT                 PSIQLYSDCSHNILPINGLCDLQTVIFLHDMLHRVNFHHNVQLPVVPHAYP
FT                 TRRPNNLLQSRANTTFGQKRISIIGPTKYNQLPDEIKQISNRRIFKIKLKQ
FT                 HYKLHLFDILH"
XX
SQ   Sequence 5183 BP; 1643 A; 885 C; 901 G; 1753 T; 1 other;
     actgttctgg tagttggtgc aattactatt agctcaaatt agattcagta atttatagtg        60
     attttctcct tttaaagtag tatttcattt tttaaagtgt gaatgaatat cggatctcgt       120
     tacataaagt cttgtaatga atgtttgctg tggttataaa aagtaatatc aatttacatt       180
     ttgtcaagtg atcatttacg gttcttgtct ttttccaaca atacatcgtt tgtttgagtg       240
     tgtgtactgt acggaataaa ctgtggccca atcactcaat tatcgtcata tctgtgttga       300
     agggtcttgt ttggacgaca gcttgtgagt gccagttgat aactattgtg tgcggagtat       360
     atcccttagt agcacacaac tgtggtttct ctggtctctg gcaagggcca tcgtcgctac       420
     atacaactgc cacaaagtag tctgtaggta tgcaagtggt cgctgtgtta ctctgcagaa       480
     tttagcgaaa cgggatagaa aggtaccaat accttataaa ctcctctaat agccagtagt       540
     tctgtgggat ctcttcctct cttgatgagt agttgagtgg gatcacggtt tactgcatga       600
     ttgtttgtgc tgaattttgt ttcactgatg tttgtaagaa caagacttga ccatttgatt       660
     tttgtatgtg tgttgtatct tgtgttacct ttttatacca tatgctctgt gatacacatt       720
     cattttaatt tgttttgatt ctcgaggttt gtagtagtat ttagtttata tttacaacct       780
     ttgtttttgt tttcgagtct caggttctta tctcaaaaat gttgaatgat cagactgatg       840
     atgctgttta ttgtgttgag tgtagaaagc aggaaaatga tttgagtcaa ctaattacat       900
     gtttgtactg ctattctaat gctcatttca cgtgtcgaaa tataattggc tctgctgttc       960
     gtaaaatgaa aaaaaatatg tacttctgta catcaaaatg ttctgatatt tacaaaaaaa      1020
     taaccgatat gcaaaacaat cgtacaccaa tgatcgatag actcagttca gagctccaaa      1080
     aaagtgtggt cactgttgta tcagctcaac tgaaagaagt aaaagccgag gttaatagtt      1140
     ttgtgaaagc cattgagcat tctcagcaat ttatctctgc caaatttgat gaattcctga      1200
     atgattttct taaactaaag actgaaaatg atcacttgaa atcagaagtt gaaggtctaa      1260
     gacatgagct gtcagctttg aaaatatccg taaataaatt ggaatttaat gatgataggg      1320
     ctaataaaga ttcgttgtcc aaaaatgcaa tattgttagg tgtcccagtc caagaaaatg      1380
     aacaggtttc cagtattgtt gccaaggttg ctgattgtat tggtttggac ctccctggtg      1440
     acgcaattga atccgcttcc cgtttacatg gtcaaggctc cactagtaat aaacatgtgc      1500
     caatacggat cgttttcaaa cacaaatcta tgaaagaatc gttcttttct aagaagaaga      1560
     tattcggaaa gctttcctca gctgtcattg atcagtcgat gactgtcaat gggatgccta      1620
     cgaacattgt tattcgagat gaattaacac ctctttcatt agaactactg cgggaaatac      1680
     gaatgcttca gaagaaaatg agtctaaaat ttgtttggac aggtagggaa ggagccatac      1740
     tagttaaaaa agatgaaaat accaatacca ttagtatcaa aaatcgcaac gacttggaaa      1800
     actttgcaaa gagatcggta ttccacctaa gttctaattc gaccttgtca acaaatagtc      1860
     tatgttagtg aaagctttgt ctcttgtgtt tttgtttttg ttattttact tgtcataatc      1920
     taatagcaaa atggccacta taaataataa taattttcat gaaaacattg atgatctgaa      1980
     tgaatgctac cctaccgatc tgtcgagttc aaaacaccta cgaattcttc agtggaacat      2040
     tcgagggtta aacgattttg aaaaatttga ttgtatgctt gtaatgttgg atcaattaca      2100
     ctttccagtc gatataattg ttattggaga aacatggctc aaacaagaca atgtatcgtt      2160
     atataacatt ccggggtata agtcaatatt ttcttgtagg catagctcca atggtggttt      2220
     ggttgtgtac gtcaaaaaca gtatttcttt caatgtccaa tgtaatgtgc atctcgatgg      2280
     ttttcatcat atccatgttg aagtaacact caatagtcgt atttacgata ttcacacgtt      2340
     ttatcgtcct ccgtccttcg atgtaaatca ttttttaaac atatttgaaa acattctcga      2400
     taaatcgaac catataagac cttgtttcct gcttggtgat gttaatgtac ctatgaatgc      2460
     ttatagtaac aacgtggtta tgaaatacag ggcgctcttg gaatcgtacg gattcgtttg      2520
     ttccaacacc tttcctacta ggccaataag ctcgaacata cttgatcatg caatttgtag      2580
     aattgatgat ctccctcgta taaaaaatga cacaatttca actgaacaaa gcgatcattg      2640
     catagtaata acatcattca aactattcga agaaagagaa aaactgacac taactaaaaa      2700
     ggttgttgat catcagaagc ttaacagaga ctttacagca tttttgcaaa attatggagc      2760
     agttcaagat ggtgaatcat gtttgcttga tgtcgtttca aaatacaaat cactcaatga      2820
     aaaatactca aaaatattaa ccaaaaatgt cagtgctaag agtcaatttt gtccttggat      2880
     gaacttcaat ctttggcatc taattaaaat gaaaaataac tacatcaaac gattaaaaag      2940
     aaatccagat gacaatcatc tcaaagcttt acttaaacat gtctcaaata aagttagcac      3000
     ttcaaaaaaa aattgcaaaa ggatttacta tgataatctt ttgaataata cacctcactc      3060
     aaaattgtgg aaacgcataa attgcatttt cgggaaaagc tctaaagctg ataccattgt      3120
     tcttcttgat aatggtgcaa aaatctacga taatcaactt acctgtgaaa tttttaataa      3180
     ttttttctcg aacataggcc agcaccttgc taatagtatt caaatagatg ctactattga      3240
     tcctttgtct tatttgcgga gagttccaaa ttcaatattt ctaaccccag ctactgtcaa      3300
     tgaagttact ttattgataa atgaattgaa acgtaagaaa tgtggtggtc ctgataatat      3360
     tactgctgat attgtcaaaa ataattctgt ttgcttatct agaattctat ctgaggtatt      3420
     taataaaatt ttagaaactg gctgttatcc aaagtgttta aagattgcaa gggtagtccc      3480
     tgttttcaaa tcaggtgatg cgtctgatat aaataattat agacccatct caacgttatc      3540
     tacatttaat aaaattatag aaaagttgtt gataaacaga ttagtacctt ttctcaatca      3600
     gcacaatgtg ttttataaat accaatatgg gttccggcaa ggaagcggca cagaaacggc      3660
     aattttggag cttctagatg atgttatcaa aaatattgac aataagaaag ttgtgggatc      3720
     attgttttta gatttacgga aagccttcga tacacttaat cacacaattc ttttaaaaaa      3780
     gcttgaagca tacggtatca gagggttggc aaataaagtc ttgcaaagtt atttatcaga      3840
     tagaatgcaa tttgtctcta ttggtgactc cgttagctcc ctcagaccaa ttacggtagg      3900
     tgtgcctcaa gggagcaaca tcggcccatt gttgttcctc ttgtacatca atgatctttg      3960
     tagactccca ttgaaaggtg ttccacgcct atttgctgat gatacagctc tcttctaccc      4020
     acgttttgat gtgcatatgg ttgtaaaaga tatcaatgat gacttgaaaa ttttatcaaa      4080
     atacttagct tcaaatcttc tgtccctaaa tatatcaaaa actaaatata tgatttttca      4140
     ttcacccagg aagcggattc aagmtcacaa cgtagttatg ctcaactctt gctgcattga      4200
     agaggtcaaa tcattcaagt atttgggaat aattttagat gccactttga attggtctga      4260
     gcatatagaa tatatcgaaa agaaaacatc ttcactgtgt ggtgttttac ggaaagtaag      4320
     ctattttgta ccccgcagta ttttacaaaa attctacttt gcgcatatcc attcagcctt      4380
     caactattta atagttgctt ggggccgtgc ttgtaaatcg cgtctgaaaa agcttcaaac      4440
     catacaaaat aggtgcctta aaactatact taaaaaacca ttcttatttc cttcaattca      4500
     gctttattct gattgctctc acaatatctt accaatcaat ggtctttgtg atttacaaac      4560
     tgtaatattt ttacacgaca tgcttcatag ggttaatttt catcacaatg ttcaattgcc      4620
     agtagttcct cacgcttacc caactaggcg cccaaataat ttgcttcaaa gtcgagctaa      4680
     cacaacattt ggccaaaaaa gaatatcgat catcggtcca accaagtaca atcaactacc      4740
     ggatgaaatt aagcagattt ccaatcgtcg tattttcaaa ataaaattga aacaacatta      4800
     taaactgcat ctttttgata tccttcatta atcttacata tatatttatt ttgttatttt      4860
     attttgcacc tactaccagt aacacgttat atttaaattc atttgtataa tttagttttt      4920
     agatggctcc cttaaaagga acattttgtt ccactgggat gtcatgccct tcacattcga      4980
     atgttattat taattttatt caatatattt ttcctagtta ttttttattt gttgcatctc      5040
     agctccgtat taagtttgtg tttttgtatt gctgttcaga tagagctgag atagttgcgt      5100
     ccactaccag gaagctctct ctccatgtga gctttttggt gtgggggata gtggcgggta      5160
     aaaaaaaaaa aaaaaaaaaa aaa                                              5183
//
ID   Crack-28_AAe repbase;    DNA;    INV; 4919 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-28_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4919
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1244-1244 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           717..1745
FT                 /product="Crack-28_AAe_1p"
FT                 /translation="MCCVYTFHFVFVYFCLFKYLFLKMNSENLCNNCHKIE
FT                 PDGNKLIACKYCFTKIHIKCPKNLGRSIKQNESKLHFCSSKCSSMYERIIN
FT                 SRMQNSKDMSKLLEELKSAVRANMQTVVEQVKAVTXAIESSQEFLSSKFEA
FT                 ILTDFDVLKKENIRLRQEIEEMRSSQSSLTALVYKTEVEMDKQNKISVMNN
FT                 AVILGVPFKKTEDLPGICRKIFETIGVESYNHSIVSVARIQANDKNAMSPI
FT                 RIVFKDKKSKDVVLEKKKRFGQLVSTMVDPKLMCENKTTTVTIRDELTPLS
FT                 TYLLNELRQAQGKLNLKYVWQGRGGVILAKTDENSKPHEIRNRVDLNKLLK
FT                 "
FT   CDS           1772..4696
FT                 /product="Crack-28_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLLSVIIFMSITMANSLQNYFHYSIDDFNKLYSNKTE
FT                 KSLRFFQWNIRGMNNLDKFDSILEFLDQCDVPLDVLVISETWLKAENTCLY
FT                 GIPGYQSIFSCRNSSSGGLAMYISNQINYRLIASETLDGLHHIHIELKVHE
FT                 HQYEIHGVYRPPSYDVNCFLDKIEEWINNTNQNHVCFMLGDFNIPINLTHN
FT                 NIVVKYRSLIESYGLVCSNTFTTRPSSNNLLDHVLCRLEDVERIRNDTIFS
FT                 DKSDHTQIISSIKTSVDRKSTTVTKTIVNHRQVEFEFETFLNTIDAIDNVS
FT                 ATLSRIQNVYNDILHRCTKTVSRKIKIKNHCPWMSFDLSVLIRIKNSYLKK
FT                 AKRNPNDANLKAMLNHISKKVQYTKIACKKQYFEKLLNTTCHSKLWSNINQ
FT                 IFGRTKEKQKICINNAQNVPSSSVEESCEILNNYFTTVGEELARKIPRLPG
FT                 TSPFNHLTPINSSIFLRPTNPNEVISLINDLDSNKCPGADNIPPSILKMNY
FT                 AKFSTILSNMFNEIIASGEYPDCLKIAKVTPIFKSGDPNLACNYRPISTLS
FT                 VFNKIFEKLIVNRIIQFFKLHNVLYPLQYGFRQGCSTTSAVVELVDYVIKQ
FT                 IEAKKIVGGLFIDLKKAFDTLNHNILLKKLEYCGVRGLPNRLIGSYLTNRK
FT                 QFVAVEGKTSKTLGINTGVPQGSNIGPLLFLVYINDIGKLDLKGIPRLFAD
FT                 DSALFYPGASTDEIVSHVEHDLCILNDYFCLNLLSLNLAKTKYMLFHSPRK
FT                 KPVPRNHPKLKDIVIELVSEFKYLGIVLDPIFSWDKHIKSIEKKVAILCGS
FT                 IRRVKSFVSQAALLKYYYACIHSLLQYLNIVWGYACKSKLKRLQTLQNRCL
FT                 KHIFNFPPLYSTVNLYTNRNHCILPIRGLCELQTCLFVYDAVYNDNTHNNL
FT                 PIMLNNQLQNTRQAHHLLRTQAKTTLGQKRITFIGPQKYNVLPNYLKSVNN
FT                 RNIFKSRLKMHLKEKIHEFV"
XX
SQ   Sequence 4919 BP; 1663 A; 869 C; 882 G; 1504 T; 1 other;
     aatttaatat tggtgttgaa tagtgaagtt aaatggtcaa gcgcatcaat gatgttaatg        60
     atttatgcat gctgctactt aaagtgatgt aaaatgcaaa ataaaattaa atcttcttga       120
     aaacgttgat aacaatgtac aattagtagt agtgcattct ggctgatagt ggttgctcgt       180
     tgttgctgtt gttggtggag cttcgatgga cacactttgt attagttccg tgttgtgaaa       240
     acgaaagagg ttcgattgat gctagccctg cccaagtacg tcgcaggtac ttctcgtagt       300
     gttgtccacc aaaacaatat tctaggaggt tctggctcta cggacaagta gccaaattcg       360
     ccatcggggt agatttaaca ttgtaacgga aaagctatac cttagtacgt cgcatgtaca       420
     tcgtgaggtg tcgttgaaaa acacgatacg catgtatggt tctggctcca ttactagcga       480
     tcggccgttg tatttgtaga gtagatttga cactgtcatg gaaagggtgt gcctagctat       540
     acattgaaac tttagtagtg agtagcttcg tgggatctta gtgagtacac cgaacatacc       600
     ttagattgat aatttatagt agagacccta taaccactca gaaaacacat tgaagtcaca       660
     ctcagtcaga gataccgtat atattacatt ccttttattt ttgtatttga tattgcatgt       720
     gttgtgtata cacattccac tttgtttttg tttatttttg tctttttaag tatctgtttt       780
     tgaagatgaa ctcagaaaac ctttgcaaca attgtcacaa aatcgagcca gatggcaata       840
     aattgattgc gtgcaaatat tgcttcacaa aaatacacat taaatgtccc aaaaatttag       900
     gcagatctat caagcaaaat gagagcaaat tgcatttttg ttctagcaaa tgctcaagca       960
     tgtacgaacg cattatcaat tcgcggatgc aaaatagtaa ggatatgtcc aagctattag      1020
     aagaacttaa aagtgctgtg cgtgccaata tgcagactgt tgtagagcaa gtaaaagctg      1080
     ttactwgtgc aatcgaatcg tctcaggaat tcctttcttc aaaattcgaa gctatcttga      1140
     ctgatttcga tgttcttaag aaagaaaaca ttcgattaag acaggaaatt gaagagatga      1200
     gatcgtcaca aagctccttg acggctctgg tttacaaaac ggaggtggaa atggataagc      1260
     aaaacaaaat atccgtaatg aataatgcag ttattttggg tgtccctttt aaaaaaactg      1320
     aagacctacc cggcatctgt aggaaaatat ttgaaacaat aggagttgaa tcatacaacc      1380
     actcgatagt ttctgtagcc agaattcagg caaatgataa aaatgcaatg tcaccaatca      1440
     ggatagtttt taaagataaa aaatcgaaag atgtagttct cgaaaagaaa aaacggtttg      1500
     gtcaactggt ttcaactatg gttgatccca agctaatgtg tgaaaacaaa actactacag      1560
     ttacaattcg cgatgagctc actccattat caacttactt actaaatgaa ttgcgacagg      1620
     ctcaaggaaa acttaatcta aagtatgtct ggcaaggtag aggtggcgtc attttggcaa      1680
     aaacagatga aaactctaaa ccccatgaaa ttcgcaatag agttgacttg aacaagttgc      1740
     tcaaatagtt tcatcaaatt tcgatgtgcc tatgttgtta tcagttatca tattcatgtc      1800
     aattacaatg gctaattcat tacaaaacta tttccattac tcaatagatg attttaataa      1860
     actttattct aataaaacag aaaaatcctt aaggtttttt cagtggaata taagagggat      1920
     gaataattta gacaaatttg attctattct tgaatttttg gaccaatgtg atgtcccttt      1980
     ggatgtactt gtcattagcg aaacttggct taaagcggaa aatacgtgtt tatatggtat      2040
     accaggatat cagtctattt tctcttgtag aaactcttcg agtggtggtt tggcaatgta      2100
     tatttcaaat caaataaact acagattgat agcatcagaa actttggatg gcttacacca      2160
     tatacatatt gagctgaaag ttcatgaaca tcaatatgaa atacatggag tctatcgacc      2220
     tccgtcatat gatgtaaact gttttttgga caaaatcgaa gagtggatca ataatactaa      2280
     tcaaaatcat gtatgtttca tgctaggtga tttcaacatt ccgattaacc tcacgcataa      2340
     taatattgtc gtgaaatata gaagtttaat agaatcgtac ggcttggttt gttcaaacac      2400
     cttcacaaca agaccgtcta gtaacaatct gctggatcac gtactttgtc ggttggaaga      2460
     cgtagaacgc attcgaaatg atacgatatt ttcagataaa agtgatcaca cgcaaattat      2520
     ttcatctata aaaacatctg tggatagaaa atcaacaaca gttacaaaaa ccatagtaaa      2580
     ccatcggcaa gtagagtttg aatttgaaac attcctaaat acaattgatg ctattgataa      2640
     tgtatcggct acactgagta gaatacaaaa tgtttacaac gacattttac atcgttgcac      2700
     aaaaactgtg tcgcggaaaa ttaaaataaa aaaccattgt ccctggatgt cctttgatct      2760
     ctcggtgttg ataaggatta aaaatagtta cctaaaaaag gcgaaacgca acccgaacga      2820
     cgctaatctt aaagcaatgt tgaatcatat aagtaaaaag gtgcagtata ccaaaattgc      2880
     ctgtaaaaaa caatactttg aaaagttatt gaacacaaca tgccattcga aattgtggag      2940
     caatatcaat caaatttttg gaagaacaaa agaaaaacag aaaatttgta tcaataatgc      3000
     acaaaatgtt ccatcaagct ctgtagagga atcttgtgaa attctcaata attacttcac      3060
     gacagtagga gaggagttgg ctaggaaaat ccctagactc ccaggaacaa gtccatttaa      3120
     tcatcttaca cctataaata gttccatttt cctgcgtccc actaatccca acgaagtgat      3180
     ttcccttatt aacgatctag attctaacaa atgtcccggt gcagacaata ttccgccatc      3240
     aatacttaag atgaactatg ccaaattttc aacaatttta tccaacatgt tcaacgaaat      3300
     tattgcatca ggagaatatc cagattgtct aaaaatagcc aaggtaactc cgatatttaa      3360
     gtccggggat cctaacttag cctgcaacta tcgtccaatt tccacacttt cagtatttaa      3420
     caaaattttc gaaaagctta tcgtgaacag gataatacaa ttcttcaagc tgcataatgt      3480
     tctatatcca ctccagtacg gatttcggca aggttgcagt accacttctg cagtggtaga      3540
     gttagtcgac tatgtaataa aacaaataga ggcgaagaaa atagttggag gacttttcat      3600
     tgacttgaaa aaggccttcg atactctgaa ccataacatt ttattgaaaa aattggaata      3660
     ctgtggtgtt cgaggtcttc ccaatcgtct cattggtagt tatttaacca ataggaagca      3720
     atttgtagca gttgagggca aaactagcaa aactttagga ataaatacag gagtgccaca      3780
     agggagcaac atcggtccac ttctgtttct tgtatacatc aacgacattg ggaagctcga      3840
     tctaaaaggt ataccaagac tttttgccga cgactctgct ttgttttacc ccggagcatc      3900
     cacagatgaa attgtttcgc acgttgaaca tgatctttgc atactcaatg attatttttg      3960
     tttgaacctt ctctcgctca atttagcaaa aaccaaatat atgttattcc actcaccaag      4020
     gaagaaaccc gtaccaagaa atcatccaaa attaaaagac atagttattg agctggtctc      4080
     ggaatttaaa tatttgggaa ttgttttgga tccaattttc tcatgggata aacacatcaa      4140
     gagcattgag aagaaagttg caattctctg tggttctatc agaagagtta aatcatttgt      4200
     atctcaggct gccttgttaa agtattatta tgcttgcatt cattccttat tacagtattt      4260
     gaatatagtg tggggatacg cttgcaaatc taaactcaaa agactgcaaa ctttgcaaaa      4320
     tcgttgccta aaacatatat tcaatttccc tcctttgtat tccacagtca atctttatac      4380
     aaatagaaat cattgcattc ttcctattcg tggtttatgt gagcttcaaa cttgcctatt      4440
     tgtctatgat gcagtatata atgataatac gcataataat ctaccaatca tgttaaataa      4500
     tcagctgcaa aacactcggc aagcacatca cttattgcga actcaggcaa aaaccactct      4560
     tggacaaaaa aggattactt tcattggtcc acaaaaatac aatgtactgc ctaattattt      4620
     aaaatcagta aataacagaa acatcttcaa aagcagattg aaaatgcatt taaaagaaaa      4680
     gattcatgaa tttgtttagt gtgatctaat taccataatc ataactgtat tcctatatat      4740
     ctccggagtt ccttcaaagg atttttatcc actggaactt caactcactt tactactcct      4800
     atttcaatgt tactctgtct tgtttttatc gttattaata tctaataaat ggtgtccgct      4860
     accagggggc tctgtagagc tttttggtgc gggggtagtt ggtgggccat taaaaaaaa       4919
//
ID   Crack-29_AAe repbase;    DNA;    INV; 5437 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-29_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5437
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1245-1245 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1124..2179
FT                 /product="Crack-29_AAe_1p"
FT                 /translation="MEGEGSICVECNKVERDASKLITCMYCFAEAHFKCRN
FT                 LVGNAARRIKDKMYFCSHNCSSIYQRITEMQNQKSLIVDTLAAELKGAVSS
FT                 AVSQEMKNVRSEVHQITTAIERSQQFLSDKFEAIVSDFQDLKKENEHLKLE
FT                 IDRLKHTQHTLSNTVHKLEHTVDKNARLANCNNAVVFGVPFYPGENTTEIA
FT                 NKILACYGVNVGSDSILSAERLSGNNKTKNALIPIRVSFKDSGMKETVFDK
FT                 KKEYGVLLSSAINTNYLINGKPTSITIRDELTPLSLELLGKMREYQEKLKI
FT                 KYVWASRGGNILVKKNEHSKPEIIKTRDDLHELINRYCNHSPEKTTPSPKR
FT                 KCGNNSSNK"
FT   CDS           2233..5115
FT                 /product="Crack-29_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANVINAYHDCINEFNLNYPECSNDQFRIAQWNIRGM
FT                 NDLRKFDNIPLFLESTKVPIDVFVVGETWLKSSNSGLYNITDFNAVFSCRE
FT                 TSSGGLAVYIKSGLSFAVLNNVSCDGFHLIHIEVKKNGIYYEVVGLYRPPS
FT                 FDFYRFHEEIENILSVQNSRLRFIVGDINIPVNLSNNNVVVRYKNLLESYN
FT                 YSCSNTFVTRPISNNILDHLVCNNDVLGRIRNDTIFTDVSDHLPIVSSLEI
FT                 YGPKESVILTKQIIDRDKMNALFTQFLNNFVCGDNVNDSISTITNTYSSIL
FT                 EQCTKIKSEQVNFKSKYCPWLNHYVWQWIKLKRKYRKKLKSDPHNEYLKSM
FT                 FIYVCKKTDNAKKKCKKEFYGNLLENTCHAKLWKNLNTIMGRYKAKTCIEL
FT                 NIDGRKTSSISEVCDIFNNFFTQIGTNLASKISISNLNPLSNVKRVGRSIF
FT                 LKPTNANEVIDIIKELNAKKSCGPDNFPACVFKNNATTFSYIIVDLFNKML
FT                 QQGVFPDCLKIAKVIPVYKSGDASDPSNFRPISTLSTFSKIFEKLLVNRFI
FT                 SFINQNNILYKYQYGFRKGCSTTTATVELVEFLLSKIDSKCIVGGLFLDLK
FT                 KAFDTLNHRILLQKLECYGFRGLANDIIKSYLTDRQQFVAIDGCRSSLQTV
FT                 NVGVPQGSNIGPLLFLIYINDLGNLPLQGIPRLFADDTAIFYPSNDTPSII
FT                 SSINSDLQILMQYFDCNLLSLNLLKTKYMLFHSPRKKVTTHMNPSVGQVAI
FT                 EKVLKFKYLGLVLDANLSWGSHIEHIQGKIASLCGLMYRVRPFVPRNALLK
FT                 FYFGCIHSHLQYLIIVWGHACKSKLKKLQVLQNRCFKIIYSLPQLYSTNQL
FT                 YTNLTHKALPIRGLCELQSCLFIYDVIKNPNMHHNLILNTRIHGHNTRHAN
FT                 NLVRSRASSNLGQMRISFYGPTVYNLIPEQLKLINSRLLFKTSLKQFFRSK
FT                 INSFLL"
XX
SQ   Sequence 5437 BP; 1760 A; 883 C; 1017 G; 1775 T; 2 other;
     ctggcaacac tgttgtttgg ttgatacgcg ttatatcttg catattttgt gattgatttt        60
     atagagtgta atttattttt ttaattatat ttcatcattc gatttgaacg tgagtggcat       120
     atatttcatt gtttgtaagt cagtcatatt gattatgtgc taaatataga taaataagca       180
     attttaaaat agawgggtat gatatcttca cagaagagat gaatatatgc ttgtactgag       240
     gtgatgctga tgttgtattg ttgactgctg ctgttgttgt tgctgtgtga ttggttgttg       300
     gctctgtggc acgmaaataa aatttactaa accttgtgta tgagtgcgga agtgattcag       360
     gttgtgcttg ctaagtggtt ctatcagctg caacagggga gaaatacatg caaattattt       420
     tggtcgacag atttaacgaa aatcaggcga acgggcgtct tacacaatca agccgttggt       480
     tcgtgcttgg tgtactggtg ctgtagtagt agggttagta gtacactttg tggttctgtt       540
     acagaagaaa tgcatgttga gtatctctag ttcagcaggt agattcggtg aaatacgagc       600
     gaacgggcgt cttgcacatt gtagccgttg gttcgtgcta ggtgtattgg tgctgaagta       660
     gtttgtatag taacacactt gttctgtata ttcaaggagt gaaattattt gcatgcaaga       720
     cttgcacgca aatttgagta attctcgctg ggtggacaga aatagccaat cttaataacg       780
     agtacccaat actgtacaat taattcgcaa tcctaacgtg caccttagat acttatgaac       840
     tttttcatgg tagcttcata tgcagtatgt tagcaacaat actttgattt tgatgtgtgt       900
     atgcaaatgg aaaatggttt atgatatcat caaattctat taacaggctc caatatctat       960
     ttttagccgt ttgcaaatag agtactgact acgatagccc ttgcataact tttatttttt      1020
     aaagtggtgt gtgtaacggt tcatttctat ttgcagcagt ataaagttgt ttaccttggt      1080
     tgattgattt tggacctgtg actgttgtat caaatctgta tcaatggaag gcgaaggtag      1140
     catttgcgtc gaatgcaata aggtcgaaag agatgccagt aaattaataa catgcatgta      1200
     ttgtttcgct gaggcgcatt ttaaatgtcg taatttagtt ggcaatgcgg cccgccgtat      1260
     taaagacaaa atgtattttt gctcacacaa ttgctctagt atttaccaac gaattacaga      1320
     aatgcaaaat caaaaatctt tgatagttga cacgcttgcc gctgagctta agggagcagt      1380
     gtcgagtgct gtgtctcagg agatgaaaaa cgttaggagt gaggttcatc agattacaac      1440
     tgcgatagag cgatcacagc aatttttgtc agacaagttc gaagcaatag tatcagattt      1500
     tcaagatttg aaaaaggaaa atgagcattt gaaactcgaa atagataggt tgaaacatac      1560
     gcaacacact ttgtcgaata cggttcacaa actggaacac acggtagata aaaatgctcg      1620
     tcttgctaat tgcaacaatg ctgtagtttt cggggttcct ttctatcctg gggagaacac      1680
     gacagaaata gctaacaaaa tattagcctg ctacggtgtg aatgttggtt ctgattcgat      1740
     tttgtcagcc gaaaggctca gtggtaataa caaaaccaaa aatgcactaa ttcctattcg      1800
     cgtttcattc aaggacagtg gtatgaaaga aactgttttt gataaaaaga aggagtatgg      1860
     ggtgctcctt tcatctgcga tcaatacaaa ttatctaata aatggcaaac caacctctat      1920
     tacaatacgc gatgaattaa ctccgttgtc cttggaattg ttgggtaaaa tgcgcgagta      1980
     tcaggaaaaa ctgaaaatta agtacgtctg ggctagtaga ggtggaaata tcttagttaa      2040
     gaaaaatgag cactcaaagc cggaaataat taaaacaagg gatgatttgc atgaattgat      2100
     taatcgttac tgtaaccact caccggagaa aacaactcca tcgcccaaaa gaaagtgtgg      2160
     caacaatagt agtaataagt aatttaagat aatgtgtttt cttatgtatg tttatatatt      2220
     tgtttgtatt caatggctaa cgtaataaat gcttatcatg attgtatcaa tgaattcaat      2280
     ttgaactatc ctgaatgtag taatgatcaa tttcgaatcg ctcaatggaa tattagaggc      2340
     atgaacgatc tgcgaaagtt tgataacatt ccattatttt tagaaagtac taaggttcca      2400
     attgatgttt tcgttgttgg tgaaacgtgg ttgaagtcaa gcaatagtgg tttatacaat      2460
     ataactgatt ttaatgctgt tttttcttgt cgagaaacat cgtctggtgg tcttgctgtt      2520
     tatattaaaa gtggtttgag ttttgccgtt ttgaataatg ttagttgtga cggatttcat      2580
     ttgatccata tcgaagtcaa gaaaaatgga atttattatg aagtggttgg cttatatagg      2640
     ccaccatctt ttgacttcta ccgatttcac gaagaaattg aaaatatttt gtccgttcaa      2700
     aacagtcgtc ttcgtttcat agttggtgat ataaacattc ctgttaacct gtccaataat      2760
     aatgtcgttg tgcgttacaa aaacctcttg gaatcataca attatagctg ttcaaatacc      2820
     tttgttaccc gtccaatcag taacaatatc ttggatcacc ttgtatgtaa caatgatgtt      2880
     ttgggtcgaa taagaaatga tactattttt acagatgtca gtgaccactt acctatagtg      2940
     tcttcactcg aaatctatgg acctaaggaa tctgttatac tgactaaaca aataattgat      3000
     agagataaaa tgaatgctct ctttacacag tttttaaata attttgtttg tggtgataat      3060
     gttaatgatt ctatctctac tattacaaat acatacagta gtattttgga acaatgcaca      3120
     aaaatcaaga gtgaacaagt gaattttaaa tcaaaatatt gtccttggtt aaaccattat      3180
     gtatggcaat ggataaaact taagcgtaaa taccgtaaaa aattgaaaag tgatcctcat      3240
     aacgaatact taaaaagtat gttcatttat gtttgtaaaa aaactgataa tgcaaaaaag      3300
     aaatgtaaaa aggaatttta tgggaattta ttagaaaata cttgtcatgc caaattgtgg      3360
     aaaaatttaa acacaattat gggacgctac aaggcaaaaa cttgcattga gcttaacatt      3420
     gatggacgca aaacatctag catctcagaa gtctgtgata tattcaacaa tttctttact      3480
     caaatcggta caaatcttgc ttcaaaaata tcaatatcca acttaaatcc gttgagtaat      3540
     gttaaaagag tagggagatc tatttttctg aaaccaacga atgcaaatga agtaattgac      3600
     ataataaaag aactcaacgc gaagaagagt tgtggtccag acaactttcc agcatgtgtc      3660
     tttaagaaca atgcaactac attttcatac ataattgttg atcttttcaa caaaatgtta      3720
     caacaggggg tattcccaga ttgccttaaa attgcaaagg taatacctgt ttacaagtct      3780
     ggtgacgcat cagatccaag taattttcgg cctatttcca ctctctccac atttagtaaa      3840
     attttcgaga aattattagt gaatcgtttt atcagcttta taaatcaaaa caatatttta      3900
     tataaatacc agtacgggtt tcgaaagggg tgtagcacaa caacagcaac agtcgaactt      3960
     gtagaattcc tgcttagcaa aattgacagt aagtgtatag ttggtggcct ctttcttgat      4020
     ttaaagaaag cgttcgacac gttaaaccat agaattcttc tacaaaaatt ggaatgctat      4080
     gggttccgag gtttggcaaa cgacattatt aaaagttatt taacagacag gcaacaattc      4140
     gtagctattg acggttgtcg tagctctcta caaacggtta acgttggagt cccgcaaggg      4200
     agtaatattg gaccgctatt atttctaatt tacatcaatg atcttggaaa cctaccactt      4260
     caaggaatac ccagattgtt cgctgacgat acagcaattt tttacccaag taatgatact      4320
     ccatcaatta tatcttctat aaacagtgat ttacaaattc tcatgcagta ttttgattgc      4380
     aatttacttt ctttaaattt attaaaaact aaatacatgt tatttcattc cccacgtaaa      4440
     aaagttacta cacacatgaa cccttctgtt ggacaagttg ctattgagaa agttttgaaa      4500
     tttaaatacc taggcttagt gcttgatgcc aatctttcat ggggaagtca catagaacac      4560
     attcaaggaa aaattgcttc tctttgtggt ttgatgtatc gagttagacc atttgtccct      4620
     cggaacgcac ttcttaaatt ctattttggt tgcatacact cccatcttca ataccttatc      4680
     attgtctggg gccatgcctg caaatccaag cttaaaaaac tacaagtcct acaaaacaga      4740
     tgttttaaaa taatttattc tctaccacaa ttgtactcta caaaccaact ttacacaaat      4800
     ttaactcaca aagcacttcc aatacgtgga ttatgcgaac ttcagtcttg tttatttatc      4860
     tacgatgtca taaaaaatcc caacatgcac cataatctga ttctgaatac cagaattcac      4920
     ggacacaata caaggcatgc taataattta gtgagatcca gagcttccag taatcttggc      4980
     caaatgcgaa tatccttcta tggtcctact gtatataatt taattccaga gcaattgaaa      5040
     ctgataaata gtagattatt gttcaaaaca agtcttaaac agtttttcag gtccaaaatt      5100
     aattccttcc ttttataaaa ccatatcaac tgccagattc tagctacatt cttttgaagt      5160
     acactctata aaatgcgata aattgttgtg ttaaatatgt catattattt ctgttcaatt      5220
     aaatttctag cgaatcaggg atccctttaa aggaaatcaa ttccactggg tatccctagt      5280
     taagttatta ttgaagtata ccttacacac accgataagc ttcttttttt gttttcttgt      5340
     tagtttttta gaatttaagt gaagatgagt ccactaccag ggggctcatt aacagagctt      5400
     tttggtgtgg gggtaagcgg cgggtaaaaa aaaaaaa                               5437
//
ID   Crack-2_AAe repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4560
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1218-1218 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >96%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           344..1102
FT                 /product="Crack-2_AAe_1p"
FT                 /translation="MEDHISVSKATKLFKELLKREFMDMVQSSLNGTMNAM
FT                 QEDFKILQGKLIDIKTSQQFLSDSFDDMKQQLATLRYKLDQFEKTNAHIET
FT                 NTLNLVSIESRMDELEQQALENNLIISNLPERVDENVIDVVKKAVALHGHV
FT                 LTGSEIIACNRMRTENKRGIKPILVKFSNNTSKRMVMSAINGKRPLTATLK
FT                 TGPKVYANQHLTKRNQYMLNTAKEYKLHHGFSNVWFYKGAVYLKRTATSTP
FT                 MRIENIQELRKL"
FT   CDS           1257..4085
FT                 /product="Crack-2_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSEHNCIELMTTCSRNFEHLSETSLNILYFNIRSCRS
FT                 KIDYLETYIHSLQQPIHVIVLSETWLYSWEIFNIQNYQSYHCTRDSDRGGG
FT                 VSIFVRRDVSSQLILSSHKDVNDFVVVELIDERIKIMGVYNPGKNQLEFLC
FT                 ELDNVLSDYPKTIVLGDFNINLLDTHQRIVSDYKNTVEGNGFLFINPMTNE
FT                 YSTRVSNSIHTLIDHVFTDICKYNYGFRITDSEPHISDHRTILVSVGCNVR
FT                 TVEKRKTKTIISYDRITPESLALDNIXSFDELTHAIRSQITQNTREISITT
FT                 KKNPKKPYITNEILSMIEIKNRLYKHSQRDARYTPEYVQYRNSLTNRIKWT
FT                 KRNYYNSKLAENTLNPKNFWNTLNELVHNDSSQQLHNYAIDCPSGRVTNDL
FT                 ELCKIFNEYFINSVDTIIAHRPSSVILPTITARDLFDFSTVTENXVLLAFD
FT                 SINSNAATGYDGIPNKFLKNFKHILSQKYTEVLNGCILTSHFPSTLKIAKV
FT                 VPLFKAGARSNISNYRPISVLNSASKPFERLLHTQIREFLDQHNIINQNQF
FT                 GFIQKSNTLTASINFVSKIVDGLDKSKKVAAMFIDLKKAFDCVDHTILLQK
FT                 LAEIGFSHAAQDMIKSYLENRVQIVKINNTVGPPAHIKYGVPQGSILGPLL
FT                 FIIFINDIFSLPLRGYLQLYADDASLYYEAEDEATLIDNMQHDIELINQWC
FT                 IRNCLALNIDKTLVMTFSLRGQSANIRVACENTYLKQVEHIKFLGLTIDSN
FT                 LKWTSHIFNVENKLRTMAFAMKKIRPITTEDTAWKIYFAFVHPHIMYMNCI
FT                 WGGTNNVHLLKLARLQNGIVKTVKKLPRLTNSTELYSEKVLALNNLNKFEI
FT                 MVYMYKVQHGLIKCNIPLIRVSAVHNQRTRQQNNIYQVQSRTSMAQNSVFQ
FT                 KGIRLFNNLPIEIKLSRSLPVFKTRLRVFLSQQLVQNQQ"
XX
SQ   Sequence 4560 BP; 1589 A; 829 C; 814 G; 1320 T; 8 other;
     tatctgktgm taatagtgtg tgtgcctttg acactgcgtt cggttttacc atagcgtwac        60
     aaatcttgtt aatatttatg aacaagctaa gcttaaatag taaaaacmct ttaatttgat       120
     ggttcaaacc acacctgtat agtttacggt gaaaagttac gaaaatagtt agcattttct       180
     aaaaaaaaac gttgaatatt aaaccgcgtt ggactgttcg gtgtagagtc acctatacta       240
     aaaagggata ccctstgtta gtggagctgt cgatagtatt ggtgctgttg ttgctgtatt       300
     ggttgttgtt gttgctgtaa ctcaggctgc tgttgttgtt gaaatggaag accatatttc       360
     tgtctcaaag gcaaccaaat tgtttaaaga gctgttgaaa cgggagttca tggatatggt       420
     gcagtcttcg ctcaacggga ctatgaacgc aatgcaagag gacttcaaaa tacttcaagg       480
     gaagctaata gacatcaaga catcacaaca gtttctatcg gattcgtttg acgatatgaa       540
     acaacagctg gcaacactgc gctataagtt ggatcaattt gagaagacaa atgcccatat       600
     cgagaccaac acactcaatt tggtttcsat tgaatcgagg atggacgagt tagaacaaca       660
     agcattggaa aacaatctga tcatttccaa tttgccagag agagtagatg agaatgtaat       720
     cgacgtggtg aaaaaagcag tggctcttca tggacatgta ctaactggat cggagatcat       780
     tgcctgtaat cgtatgcgta ctgagaacaa acgaggaatc aagccaatac tcgtgaagtt       840
     ttcaaacaac acctcaaaac gcatggtaat gagtgctatc aatgggaaaa ggccactaac       900
     tgctacattg aaaacgggac caaaagtata cgcaaatcag catctcacta agaggaatca       960
     atacatgctg aacactgcaa aggagtacaa actacatcac ggcttcagca atgtctggtt      1020
     ctacaaagga gcagtttacc tgaagcgtac ggctacgtct acaccgatgc gaattgaaaa      1080
     cattcaagaa ttgagaaaac tataattact cataattgaa aagtaaatta tcacaagtat      1140
     atgtaaaatg cctcacacaa acattatcat gatacacttt ccactacact taactgttgg      1200
     ttcaaagtat ataccaccac actgtatcac atgccctgaa acaacacaca taccttatgt      1260
     cggaacacaa ttgcattgaa ctaatgacta catgttcaag aaactttgaa catctctctg      1320
     agacgtctct caatatacta tatttcaata tcagaagctg ccgtagtaaa atagattatt      1380
     tggaaacata catacacagt ttacaacagc caatacatgt aatagtattg agcgaaactt      1440
     ggctctacag ttgggaaatt tttaatatac aaaattacca atcctaccat tgtacacggg      1500
     actctgatcg tgggggtggt gtgtcgatat ttgtacgacg agatgttagt tcgcaattaa      1560
     ttctctcctc tcacaaagat gttaacgatt ttgttgttgt tgagttgatc gatgaaagaa      1620
     tcaaaataat gggagtttac aatccgggta aaaatcaatt ggagttttta tgtgagttgg      1680
     ataatgtctt atctgattat cctaaaacta tagttctggg ggactttaat attaatttat      1740
     tggatacaca ccaaaggata gtatccgatt ataaaaacac agtggaagga aatggttttc      1800
     tgtttataaa tccaatgact aacgaatatt ctacgcgagt gtctaattcg atacacacat      1860
     tgattgacca tgtattcacc gatatttgta aatataacta tggttttcga attactgact      1920
     ctgaaccaca tatttcagat catcgcacga tattggtatc cgtaggctgt aatgtgcgaa      1980
     cagtggaaaa gcgaaaaaca aaaaccataa tttcgtatga ccgaataact cccgaatcgt      2040
     tagcccttga caacatakca tcatttgatg agttaacaca tgccattaga tctcaaatta      2100
     cacaaaatac cagagaaatc agcattacaa cgaaaaaaaa tccaaaaaaa ccctatatta      2160
     cgaatgaaat tctatcaatg atcgaaatta aaaataggct ctataaacac tcacaaaggg      2220
     atgctaggta tacccctgag tatgtccagt acagaaatag tttgactaac cgtatcaaat      2280
     ggacaaaacg aaattattac aacagtaaac ttgctgagaa cactctcaat ccaaaaaatt      2340
     tttggaacac attgaatgaa cttgtgcata acgattcaag ccagcaatta cataactatg      2400
     cgattgattg tcccagtggt cgggttacca atgatctgga actttgcaaa atatttaatg      2460
     aatatttcat taatagtgtg gatacaataa tagctcatag accgtctagt gtgattttac      2520
     caacaattac tgcaagagat ttatttgatt tttcaactgt cacagaaaat kaagttctac      2580
     ttgcctttga tagcattaac tcaaatgcgg ctacaggata cgatggcatt cctaataaat      2640
     tcctgaaaaa tttcaaacat atactttccc agaagtacac tgaggtgctt aatggttgta      2700
     ttcttacaag tcatttccct agtacactaa aaatagcaaa agttgttcca ttgttcaagg      2760
     ctggagcaag atctaatatt agcaattata gaccaatatc agtattgaat tctgcatcaa      2820
     aaccgtttga acggttgttg catactcaga ttcgagaatt tcttgatcaa cataacatta      2880
     taaatcaaaa tcaatttggt ttcattcaaa aatcaaatac acttacagcc tctattaatt      2940
     ttgtttctaa aattgtagat ggattggata aatcaaaaaa agttgcggca atgtttatag      3000
     atttgaaaaa ggccttcgat tgtgttgacc acacaatatt gctacagaag ctagcagaaa      3060
     tcggattttc acatgctgcc caagatatga tcaaaagtta cctcgaaaac agagtacaga      3120
     tagtgaaaat taataataca gttggaccac ccgctcatat caaatatggc gtccctcaag      3180
     gatccatatt agggccactc ctctttataa tttttataaa tgatattttt tcacttccac      3240
     tgagaggtta cctccagtta tacgcagatg atgcctcatt atactacgaa gctgaagatg      3300
     aagccacttt gatcgataac atgcaacacg atatagagct tataaatcaa tggtgtatta      3360
     ggaattgttt agcgctgaac attgataaaa ctttggtaat gacattcagc ctacgtggtc      3420
     agtcagcaaa tattagagta gcatgcgaga atacatattt gaaacaggtt gagcacatca      3480
     aatttttggg gttgaccatt gactccaatc ttaaatggac ctcccatatt ttcaatgtag      3540
     aaaacaaact tagaacaatg gcctttgcga tgaaaaaaat acgaccaata acaaccgagg      3600
     atactgcatg gaaaatatac tttgcgtttg ttcatcctca cattatgtac atgaattgca      3660
     tttggggagg tactaataat gtgcatttac ttaagctcgc tagactgcaa aatgggattg      3720
     taaaaactgt taagaaatta cctagattga caaattcaac cgaattgtac agtgaaaagg      3780
     ttttggcgtt gaataacctg aataaatttg aaataatggt ttatatgtac aaagtgcaac      3840
     acggtttaat taaatgtaat atacccctta taagagtatc tgcagtacac aatcaacgta      3900
     ctagacagca aaataatatt tatcaagttc aatcaagaac atcaatggct caaaacagtg      3960
     tttttcaaaa aggaattagg ctttttaaca atctgcctat tgaaataaaa ctatcaaggt      4020
     cactaccagt ttttaaaaca cgtttacgtg tattcctatc acaacaatta gtacaaaacc      4080
     agcaataata cattgactac gattgtgaaa ccacactgta caaagctggt gtgactagca      4140
     tcgagttatt tggattattg tttttcgacg aaacaactct taagctcaca gtgctggctc      4200
     cctacgataa tcaaaagtaa cgcgactgta ggcgcgggat ccgtccccag gatcattaac      4260
     ctacttgtat gggctcgtag ggttgggaag tccccggtgt acaaaaagta cagttgggta      4320
     aatggcttcc tttccggcac tttaaagatg tccatcatgt ttgttacgct ttgaaccaac      4380
     atcactaagc caggtacact atcattcaga cataataaca aagaatttag tatttagtta      4440
     gttgttcaat atacacactg gaaacacaca catatactga atgaattaca ctttgaggta      4500
     actgcgcaca gttttcatta acttctgcag tggcaaataa accaaataaa taaataaata      4560
//
ID   Crack-2_CP  repbase;    DNA;    INV; 4815 BP.
XX
AC   .
XX
DT   22-JUL-2009 (Rel. 14.07, Created)
DT   22-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Culex pipiens Crack non-LTR retrotransposon.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-2_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-4815
RA   Kapitonov V.V. and Jurka J.;
RT   "A family of Crack retrotransposons from Culex pipiens.";
RL   Repbase Reports 9(7), 1333-1333 (2009).
XX
DR   [1] (Consensus)
XX
CC   The Crack-2_CP consensus sequence was derived from multiple
CC   alignment of 4 copies of Crack-2_CP that are 97% identical to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..1356
FT                 /product="Crack-2_CP_1p"
FT                 /note="ORF1."
FT                 /translation="MSHGEDAIVCAGCEKEEADENKVIECVECHRYWHTKC
FT                 KKLYGSTARRARSKPFLCSTECSELRSSVENDKKAEGLIAKVLSEVQCMRQ
FT                 EHAESNRELRNAFKELEKSQSFLAEKFEGINNDIKDLKLGQHFLKGQVDEV
FT                 HERYESVGATVERLEKEVDQHNRANIKKNAVILGVPATKDENITAVIEAIA
FT                 EAINCQLPEDAVFEAKRIGDQKDGGKVAPIRVVFANEETKEKLFDCKRTHG
FT                 VLKAAQLGSNFASASGRIVLRDELTPYGINLLREVRDLQESLEIKFVWPGR
FT                 DGVILMRRTENSKIERVRDKNDIRKLNQRRAKRSLDETNSSFNMSTNSSPR
FT                 IQQESKKR"
FT   CDS           1405..4311
FT                 /product="Crack-2_CP_2p"
FT                 /note="ORF2."
FT                 /translation="MSVLNYNYECIEECITNKAELGFHASFRVFQWNIRGM
FT                 GSLTKFDVIKEFLDRYNERIDVIVIGETWIKEGCQDMYVLDGYKAVFSCRR
FT                 SSHGGLAMFVREDLHLNLTEVRHTEGFHIIDADVQACGRDIHVIAVYRPPG
FT                 YPFTSFLDIIDDKLSRTKKDQQFFIVGDVNVPTNLPADNVVREYSRMLSSH
FT                 NLKVTNTTVTRPASGNILDHVVGSIGLGANLLNETIECEVSDHSMILSSVN
FT                 FKVPKVTQILEKRIINHTLLNQRFANVLANLRSDLDANEKIKEISARYNDV
FT                 LNASSKVVTIEVKTKGYCPWMSYDLWYLMRMKENLRRRSKTHPSDSHLKDL
FT                 LKHVSKTLQDKKEKAKREYYHNLIHNSSEKNSWKLINEVMGRKTKTKQEIS
FT                 LKMNGETISDTSQVANALNEFFCSVGAELASEIDSDKNIWKFQSLPSCNLS
FT                 LFLRPATLEEIILLIKDLNVNKAPGPDGVPATVIKTHHLAFANILLEVFNE
FT                 IISTGQYPESLKLARVVPVFKSGEATNVNNYRPISTLSAMNKIVEKLIAKR
FT                 ISAFLSANGLISNFQYGFRQGSSTLTATNELLEDIYGHLDNRRFSGALFLD
FT                 LKKAFDTVNHELLLRKLERYCIRGIPNKLLRSYLSNRLQFVSVNGFSSDHL
FT                 HIATGVPQGSILGPLLFLIFINDLPRMTWRGQIRLFADDTVLLYGNADSTR
FT                 IAEDIKADLQCLLEYFKSNLLSLNLGKTNYMIFHSAWRNVPVLPAVLVEDV
FT                 EIQRVSVYKYLGLILDSKLNWELHIDHLKQKIAPICGALWKMSSFVPRTWL
FT                 LKLYYTMVHSRLQYLTAVWGSARQVRIRELQSLQNRCLKVVFNLPRLYSTQ
FT                 MLYEDPRHSALPIRGLHAIQNITLTHNMINDPETHHNLELPTLNSGRPTSS
FT                 TGDLRLTRPNTELGKNRFTYIGYKLHNLLPVPLKLVTSKQSFKQRLRSLLK
FT                 STVSCFLAANDVRL"
XX
SQ   Sequence 4815 BP; 1442 A; 1127 C; 1095 G; 1151 T; 0 other;
     gagtgctgat tcttaccaag tggctgcatt gttcttcggg gatggaaaac cgaccccgga        60
     aaagcaagtt ctacgctggt gtttggagac atttttgccg caaactatcg ggattcgtgc       120
     agggagtcac tggtggtatt atccgacgca ggagaaagca ggttgtacaa aaaatcatca       180
     ccaaaatttc gacataatta caatagtcca cactttgcac tgtcaaccat cgggaggttc       240
     atcgattttg ctgcagtcta tcgtcactac cttcttatct caccatctga gacctttctc       300
     actatgtctc acggtgagga cgcgatcgtg tgtgccggct gtgagaagga agaagctgat       360
     gaaaacaaag tgatcgagtg tgtggagtgc cacagatact ggcatacgaa gtgcaagaag       420
     ctgtatggta gtactgccag gagagctcgc tcgaagccct tcttgtgcag cactgagtgc       480
     tccgagctga gatccagtgt tgagaatgat aagaaggcag aagggttgat agcgaaggtg       540
     ttgagcgaag tccagtgtat gcggcaggag catgcagaga gtaatcggga actgaggaat       600
     gccttcaagg agctggaaaa aagtcagtcg tttctcgctg aaaagttcga gggcataaac       660
     aacgatatca aggacttgaa actaggccaa catttcctga aaggacaggt cgatgaggtg       720
     catgagaggt acgagagtgt tggtgccact gtggaaaggt tggaaaagga ggttgaccag       780
     cacaaccgag ccaacatcaa gaaaaatgct gtcatcctgg gagtaccggc aaccaaggac       840
     gaaaacatca cagctgtaat cgaagctata gcagaggcaa tcaattgtca actacccgag       900
     gatgcagttt tcgaagctaa acggattggg gatcagaaag acggagggaa agtggctccg       960
     attagggtgg tttttgcgaa cgaggagaca aaagaaaagc tgtttgactg caagcgaacg      1020
     catggtgtcc tgaaggcagc tcaactagga tcgaactttg catcagcttc gggcagaatc      1080
     gtcttgaggg atgagcttac gccgtacggg ataaatctgc ttcgtgaagt acgtgatcta      1140
     caggaaagtc tggaaatcaa gttcgtctgg ccgggaagag atggtgttat cctgatgaga      1200
     agaaccgaaa attcaaaaat cgaacgtgtt cgcgataaaa acgatatccg gaagctgaat      1260
     caacgtcgag ctaaaagaag tcttgatgaa actaattcct cgttcaacat gtccacgaat      1320
     tcctcgccgc gcattcagca ggagtccaaa aagcgttaat tgtatgttgc cttttcatta      1380
     tgaaatgtat cttttttctt taaaatgtct gttctaaatt ataattatga atgtatcgaa      1440
     gaatgtataa caaataaagc tgaattgggg ttccatgcgt ccttcagggt gtttcagtgg      1500
     aatattagag ggatgggatc tctgaccaag tttgatgtaa ttaaagaatt tctggatagg      1560
     tataatgagc gaattgatgt gattgttatc ggagagacat ggataaaaga gggctgccaa      1620
     gatatgtacg tgctggatgg atacaaggct gtcttctcct gtcggcgttc ctcacatggt      1680
     gggttagcca tgtttgtgag ggaggatctt cacctaaacc taacggaggt tagacatacg      1740
     gaaggatttc acataattga tgcagatgtt caagcttgtg gccgtgacat ccatgtaatt      1800
     gctgtttatc gaccgccggg gtacccattt acgagttttc tggacatcat tgatgacaaa      1860
     ctgtctcgaa ccaaaaagga ccaacaattc ttcatcgttg gtgatgttaa cgtgcccaca      1920
     aacttgcctg ctgataatgt tgttagagaa tattcccgta tgctttcatc gcacaactta      1980
     aaggttacca acaccactgt caccaggcct gccagtggga acattctgga ccacgtcgtg      2040
     ggatctattg gactaggtgc aaacttgctg aatgaaacga tcgagtgtga agtcagtgat      2100
     cattcgatga ttctgtcttc agtcaacttt aaggtgccga aagtaaccca gattctggag      2160
     aagcgtataa tcaaccatac gctgctgaat caacgttttg ccaatgtctt agcaaacttg      2220
     cggagtgatc ttgatgcgaa tgagaaaatc aaggaaatat ctgcaagata caacgatgtt      2280
     ttgaatgcgt cctcaaaggt tgtcaccatt gaagtcaaaa caaaaggata ctgtccatgg      2340
     atgtcctatg acctttggta tctaatgagg atgaaagaaa acctgcgtag gagaagtaaa      2400
     acccacccca gtgactccca tctgaaggat ttattgaagc acgtctccaa gaccctgcag      2460
     gacaagaagg aaaaggcaaa aagggaatat taccacaacc tgattcacaa ttcatcagaa      2520
     aagaactcct ggaagctgat caacgaagtt atgggccgga aaaccaaaac taagcaagaa      2580
     atatcattaa agatgaacgg cgagactatt tctgatactt cgcaagtggc caatgcactc      2640
     aatgaattct tctgcagcgt gggagctgag cttgcatctg aaatagacag cgacaaaaat      2700
     atctggaagt tccaatctct accctcatgc aacctctccc tgttcctgag acctgctacc      2760
     ctggaggaga ttatactgct gatcaaggac ctcaacgtta acaaagcacc tggtccagat      2820
     ggtgtaccag cgactgtaat caagacgcac caccttgcat tcgcaaatat attgctggag      2880
     gtattcaacg agatcattag caccggtcag taccctgaat ccctgaagct ggcacgcgtt      2940
     gttcctgttt tcaaatccgg agaagcgacg aacgttaaca actacaggcc aatatcaacg      3000
     ctttctgcca tgaacaagat cgtggaaaaa ctgatcgcaa aaaggatatc tgcattcttg      3060
     tctgcaaacg ggctgatctc caactttcag tacggatttc ggcaaggaag tagtacattg      3120
     acagcgacca acgaacttct ggaagatatt tatgggcacc ttgacaaccg ccggttctct      3180
     ggagcgctgt ttcttgatct caagaaagcg ttcgatacgg tcaaccacga actgctgctt      3240
     cgaaagttgg aacgctactg tataagagga attcccaaca agctgttgag aagttacctg      3300
     tcaaaccgcc tccaattcgt ctcggtaaat ggattttcta gtgatcatct acacattgcc      3360
     actggagtgc cccaaggaag cattcttggt ccactgctgt tccttatctt catcaacgac      3420
     ctgcctcgta tgacctggcg tggacaaatt cgtttgtttg ctgatgatac ggttcttctg      3480
     tatgggaacg ctgacagtac aaggattgct gaggacataa aagctgatct acagtgcctt      3540
     cttgagtact tcaagtcaaa cctgttatca ctaaacctgg gaaaaacaaa ctacatgatt      3600
     ttccactctg catggaggaa cgtgcctgtc ttgcctgcgg tacttgtaga agatgttgag      3660
     atccagaggg tttcagtata caagtacctt ggtctaatac tggacagtaa gctgaactgg      3720
     gagttgcata tcgatcatct gaaacaaaag attgcaccca tctgcggagc tctatggaaa      3780
     atgtcgtcgt tcgtgcctcg aacctggctg ctgaagttgt actacacaat ggttcactcg      3840
     agactccagt atcttacagc ggtatggggt tcagcgcgcc aggttcgaat tcgggaactg      3900
     caatcgctac aaaaccgctg tttgaaagtg gtgttcaacc ttccccggct gtattccacc      3960
     caaatgctgt acgaagaccc gaggcactcc gccttaccta tccgaggact ccatgccatt      4020
     cagaacataa cactgacgca caacatgatc aacgatcctg agacccacca caaccttgag      4080
     cttccaacac tcaatagtgg acgccccacc agctctactg gagaccttag attaacacgc      4140
     cccaacacag agcttggaaa aaatcgcttc acgtacattg gctataaact gcacaacctt      4200
     ctgcccgttc ccctaaaact agtgacttcg aagcaatctt tcaagcaaag actccgtagt      4260
     ttattgaaat ccactgtcag ttgctttctt gctgccaacg atgttcgcct ctaatgccac      4320
     cctatctgct ctaactctcg ttttccaatg ccgccaccgc ccgccgagac cgccaaccgc      4380
     caaccgccca ccaccaaccg cccaccgcca accgcccacc accaaccgcc caccgccaac      4440
     cgccaaacgc ccaccgccag ccatcaaccg cccatcgcca atcgcccacc acccaccgcc      4500
     caccgaaaac cgccaaatgc ttaccaccca caccccacca cccaccacca tcaattgtat      4560
     tcactaacac cagtctctaa ctcttaaaaa aaaaaaaaat taaaaaaaag aatcgcaaaa      4620
     aaataaaaaa aaagaagaaa aaatcctctt aaaagagcaa aattgctcac tgaggatttg      4680
     tacagttaag cgagctggaa aaaaaaaatc caccagcaac aaccaccgag cctaacctct      4740
     tccaggtagg tgaatgtttc cagctgcttg ctaggaagtg tgaaattcgg tattgagtaa      4800
     aaaaaaaaaa aaaaa                                                       4815
//
ID   Crack-2_CQ  repbase;    DNA;    INV; 3918 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3918
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 33-33 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..837
FT                 /product="Crack-2_CQ_1p"
FT                 /translation="MDSNLIAELPKILDAVKEESKSVKEIVASQQFLSNQF
FT                 DKMVQMMGSLSDEIKHLRAENGLLKLSLNRLADNAKSISNVVEQAEKDIDS
FT                 HHRAQLSINAIVLGIPRTPQEDTKSIVLEICDILGYKDGEKNIVSCCRVAN
FT                 SKAACPPIRISFKHVRAKESLLDHKSSFGKLDVATLQGVRGPKGTTGKVVI
FT                 RDDLSPLSMRIFQELKQLQNSLELRYIWPGRHGAIMVRRTDRSKAIPIQSR
FT                 QDIQKLALSCRKH"
FT   CDS           882..3779
FT                 /product="Crack-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNLIQHAXNESVDDPSSLRLPPDSTVFKILQINIRGL
FT                 NRMEKLDSLCVYLHNLNASIDVIVIGETWIKQGRSQYYNIPGYHSAFSCRK
FT                 TSAGGLAIFVRNDLNFEARTNVADGGFHHISIKVDKSPSSVFVHGLYRPPS
FT                 DDTSRLFSAIEEILANSDPASPCFIVGDVNVPVNQPHNVNVRRYNQLLNAF
FT                 SATVSNTIITRPISSNLLDHVVCSIADSTRVSNYTMPCELSDHSYVLTVFK
FT                 LKADHQRKVLTKTWVNYALVDAEFQRFLENLNQNSLPVDECLQSITGTYSQ
FT                 LIQANSRTRTVEVKVKNDCCPWYNFDIWKLGNIRDSILKRWKRNRQDQHLS
FT                 ELLARANYNLSEAKKRAKKQYHTKLFNNGNAKLLWGRINELMGGKSRTNSA
FT                 PSLEVNQNIEHDPVTVANLFNDYFVSVGDNLASQLTSDGNINRFNTMKRSN
FT                 ISIFLRPASVLEISNLIHELDPKKASGYDGFPVSALKKHRNLLSAIICNCF
FT                 NQCVSLGTYPPCLKKAVVHPIYKNGNPRDPTNYRPISVLPVINKVFEKLIY
FT                 ARLSNFLVATKRFYAHQFGFRKGSSTEIAVLEMTDEITKKLDQKMSAGTIF
FT                 LDLSKAFDTINHEMLLRKLEVYGIQGLPNALLRSYLSDRLQQVTVSGVRGN
FT                 SRFVRCGVPQGSVLGPLLFLLYVNDLPNLVLKGKPRLFADDTAISYYGSSP
FT                 NQVIEFMREDMELVMNYLDNNLLSLNLGKTKLMHFRYPKRVLPPHPALTVR
FT                 NQTIEEVTSYKYLGVHIDNRLCWDVQTREIVSKCASLCGILRKLSTTVPQH
FT                 VLLKMYLAFIHSRYQYAVAVWGGCSKTHLSDLQVQQNRCLKAIFKLPFLHP
FT                 TRELYLMRQHTVLPIRGIFMHRIAVIMYRTLNNVNLHHNFEFRTAIHQHYT
FT                 RQAHHLRRSDFRTETGRRRFVVAGPTVYNSLPDEIKQARSLSEVKSKLTAY
FT                 IRSNVNNYLLH"
XX
SQ   Sequence 3918 BP; 1214 A; 955 C; 798 G; 949 T; 2 other;
     ctgtattcgc acactaccta ccggccgttt tgattcaggg acaactagcg ccatctgtgg        60
     acgagcacca gtaccatgga ttcaaatttg attgcagagt tgccaaaaat cctggacgca       120
     gttaaggagg agtcaaaaag tgtaaaggaa atcgtagcta gccaacaatt cctatccaac       180
     caattcgaca aaatggttca aatgatgggt tcactgagtg atgaaattaa gcatttacgt       240
     gcagagaacg gccttctaaa gctatcgctt aatagactcg ccgacaatgc aaagtctata       300
     tcgaatgtag ttgagcaagc tgaaaaggac atcgacagtc accacagagc ccagctttct       360
     atcaatgcaa tagtgttagg cattccgcgg acaccacaag aagacactaa atctatcgtg       420
     cttgagatct gcgatatttt gggctacaag gatggagaaa aaaacattgt atcatgctgt       480
     cgagttgcaa actcaaaagc tgcttgcccg ccgattcgta tctctttcaa acatgtaagg       540
     gccaaggaaa gtctactcga ccataaatca agctttggga aactggatgt tgctactctc       600
     caaggtgtgc gcgggccaaa aggaacaaca ggcaaggtag taattcgtga cgacctatca       660
     ccactctcaa tgaggatttt ccaagagctc aagcagttac aaaactcact agagctgcgt       720
     tacatctggc ctgggcgaca tggcgcaata atggtgaggc gtactgatcg atcaaaggca       780
     atcccgatcc aatcacgcca agacatccag aagttggcgt tatcgtgtcg caaacactag       840
     caagcattgc ttgtcagcga ccatctatct agaacacttc aatgaaccta atmcagcatg       900
     ccasaaatga gagcgtagat gacccctcgt ctctacgcct acccccagat tctaccgtct       960
     tcaaaatact ccagatcaac attagaggac tcaaccgaat ggaaaaactc gactccctgt      1020
     gcgtttacct gcacaacctg aatgccagca tagacgtcat cgttatagga gaaacgtgga      1080
     ttaaacaagg cagatcgcag tactacaaca tccccggcta ccacagcgct ttttcctgcc      1140
     gcaaaacctc agctggtggt ttggcgatct tcgtacggaa cgatctcaac tttgaagcta      1200
     ggactaacgt cgctgatgga ggatttcacc acatttccat aaaggttgac aaaagcccgt      1260
     cctcggtatt cgtccacggt ctgtaccgcc cacctagtga cgacacatcg cgattgtttt      1320
     cggcgataga ggaaattctt gctaattcgg atcctgcgtc cccatgcttc atagtcggtg      1380
     atgtcaatgt acctgtaaac cagcctcata atgtgaacgt acgaagatac aaccagttgc      1440
     tgaacgcctt cagcgcgaca gtgtccaaca cgatcatcac cagaccgatt agtagcaacc      1500
     ttcttgatca cgtggtgtgc agtattgctg actcaactcg tgtttctaac tacaccatgc      1560
     catgcgaact cagtgatcat agctacgtgt taactgtttt caagttgaaa gctgaccacc      1620
     aacgtaaagt cttgactaaa acctgggtga actatgcttt ggtagatgct gagtttcaac      1680
     ggtttctgga gaatctgaac cagaactcgc ttccagttga tgagtgtcta caatctataa      1740
     ccggtaccta ctcccagctg atccaagcaa actccagaac aagaactgtt gaagttaagg      1800
     tgaaaaacga ctgctgccca tggtataact ttgacatctg gaaactcggc aacatcagag      1860
     acagcattct gaaaagatgg aaacgcaacc ggcaggacca acacttgagt gaacttctag      1920
     cacgtgcaaa ctacaacctg tctgaagcaa aaaaaagagc gaagaaacag taccacacaa      1980
     agctgttcaa caacgggaat gcgaagcttc tttggggacg tatcaacgag ctgatgggtg      2040
     gtaagtcgag aacaaactct gccccttccc ttgaagtgaa ccagaacatc gaacatgatc      2100
     ctgttactgt tgccaactta ttcaacgatt acttcgtgtc ggtgggagat aaccttgcca      2160
     gccagctcac atcggatggc aacattaacc ggttcaacac catgaaacgc tcgaacatat      2220
     ccatattcct ccgacccgca agcgtacttg aaatctccaa cctgattcac gaactcgacc      2280
     cgaagaaagc ttccggttat gatggatttc cggtttccgc gctcaaaaaa catcgaaatc      2340
     ttctctctgc catcatttgc aactgtttca accaatgtgt tagcctagga acatacccac      2400
     cctgtcttaa aaaagcagta gtacacccaa tttacaaaaa cggaaacccg agggacccta      2460
     ccaactatcg acccatctcc gtgttacctg tgatcaacaa agtctttgaa aaactgatct      2520
     acgcacgtct gagcaacttc ctggttgcca caaaacggtt ctacgcccac caatttggtt      2580
     tccggaaagg atcttcaacg gaaatagctg tactcgagat gacggatgaa atcaccaaga      2640
     agctggacca gaaaatgtcc gcaggaacaa tattcctgga tctctccaag gcgtttgaca      2700
     ccatcaacca tgagatgcta ttgaggaagt tagaagtgta cggcattcaa ggcttgccaa      2760
     acgctctcct acgcagctat ttatcggacc ggcttcaaca agtgacagtc tcaggagtac      2820
     gcggaaacag taggtttgta cgttgtgggg tgccccaagg aagtgtccta ggacctcttc      2880
     tgtttctcct ttacgtaaac gacctgccaa atcttgtgct gaaagggaaa cctcgtctgt      2940
     ttgccgacga taccgccata tcgtactatg gatcgtctcc aaaccaagtg attgaattca      3000
     tgcgtgaaga catggaactt gtaatgaatt acctagataa caatctcctc tcgcttaacc      3060
     tagggaaaac caagctaatg cattttaggt atcctaaacg agtcctaccg ccacatccag      3120
     ccctaaccgt tcggaaccaa actatcgaag aagtgactag ttacaagtac ctaggcgtcc      3180
     acatagacaa tcgtttatgt tgggacgtcc aaacaagaga aattgtgtct aaatgtgcgt      3240
     ctctttgtgg tattttaagg aaactctcaa caacagtccc tcaacatgtc ctcttaaaaa      3300
     tgtatctagc tttcatacac agtcgatacc aatacgctgt agcagtctgg ggaggatgca      3360
     gcaaaactca ccttagtgac ttgcaagtcc aacagaatag atgtttaaaa gctattttca      3420
     agttaccttt tctgcaccct acgcgtgaac tgtacctgat gcgccaacac actgtactac      3480
     caattagagg gatctttatg caccgtattg cagtaattat gtacagaaca ctaaacaatg      3540
     taaacttaca ccacaacttt gaattcagaa cagcaatcca tcagcactat acacgacaag      3600
     cacaccacct cagaagatcg gattttagaa cggaaacagg aagaagacgc tttgtagtag      3660
     caggtccaac cgtttacaat tccctcccag atgaaatcaa gcaagcacga tctctaagcg      3720
     aagtcaaaag taagcttact gcttacatta gaagtaatgt taataattat cttttgcatt      3780
     gaattaccag taatgtgtta ccagtaacta agattacaac cctttaaagg aacaactctg      3840
     ttcattaggg aagtaattgc ggaacgaaat gaatgatgaa atatacgtta ttattattat      3900
     taaaaaaaaa aaaaaaaa                                                    3918
//
ID   Crack-30_AAe repbase;    DNA;    INV; 4633 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-30_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4633
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1246-1246 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           867..1343
FT                 /product="Crack-30_AAe_1p"
FT                 /translation="MNVVGAPGKDDGIEEAKRIQSKNVSRNAVPIIVRFSN
FT                 ENTKEAFFEKKRAYGVLLASSICEAFAGSSNRITVRDEITSYGKDLLXKTK
FT                 EFQTSLDIKYVWMGRDGKVLIKRQDGAKVEKISSCEDLEKLSKLSQKRLLN
FT                 LSGASSTSSPKGPAAKRVSA"
FT   CDS           1476..4235
FT                 /product="Crack-30_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNSLEKFDCMKELLSAYTEEIDIVVIGETWLKEARCQ
FT                 LYSIDGYXAVFSCRSESDGGGLAVYVRQSLAFXNLSNEHLRVAQNGSHVDI
FT                 HAMYRPPSFLIPQFFDILETVLSSTKGGAPCIIVGDXNLATNQSNNRSVEE
FT                 YLXILNCXNFXVTNTHPTRPTSNNILDHAVCSEALSQNVVNETIFSEISDH
FT                 CLVLTTLQNCRTVRTCTLEKVIVDHTKLNDDFATAARVLPPRMTATQKLQH
FT                 VINLYHQLKERCSRKVSVQAKIKGSCPWMTFDLWKMMQLKDKILSRSRRYP
FT                 QDSRVQEQLGHVSKLLQRTKELAKRSYYGKLFENPNPKNMWKILDQVLGRN
FT                 INESQXIELEHNGRSVKDPLGVAEIFNNFFSDIGPQLASSISSQREINKFG
FT                 SLRPIRSSIYLKPATKQEVILQIKDLDNNKSAGPDGISATFLKTHHDFFAN
FT                 LLANVFNESINSGSYPDFLKTARVIPIHKAGSKKDPSNYRPISVLSVFNKI
FT                 LERLLVDRLNSFFKINDVLYHYQYGFRGGSNTLTATSELVDDIYKAMDKRK
FT                 VAGILFLDLKKAFDTIDHDVLLQKLDSYGIRGPANRLIKSYLTGRRQYVXL
FT                 QNCASSNRNLSVGVPQGSNLGPLLFLLYINDLPHLPLHGKPRLFADDTSIL
FT                 YICNEADQIIDFMKQDLEKLTEFFSENLLSLNLNKTKYVLFHSPRLTITKN
FT                 IDLVVNCTKIDEVNCYKHLGITLDSSLSWSNHIAILQKDVSTTCGVLWKIS
FT                 KFVPSKQLLLLYHAFIQSKICYLVXVWGAASKTKLKIIQTIQNRCLKVIYR
FT                 KPRLYPTIDLYSEADKSVLPVAALRDLQTLIQMQNLLHNPLALHNQEFPRT
FT                 SHRYETRNPPALVISRSNTEFGKKSYSHYGKSRYNALPIHIRAEINPLQFK
FT                 HRVIAWIRSQLSNFIL"
XX
SQ   Sequence 4633 BP; 1460 A; 976 C; 909 G; 1265 T; 23 other;
     ttggcaacac tggattcaca ttgaaaggct mttttgcaat ccgttctawg aatcgaaata        60
     tcagttgatt tcaacatcga aaattcctgc atcaggcatt agaaggcaat tcggagcagg       120
     cagcwggggt cccatcgtta tctcggaggt ttgaatcgtt tgcaccaagt tctggccagg       180
     tatttatacg aatcatcatc aatcatcaat tcgtttacac ctcgtcatca gtmggccgac       240
     ttctgtatgc attgaacgtg ctattggtgc tatcggtgct gtcgtwcacc aaataggatt       300
     gtgctagcct attgtgttat attttggtct gttgatgtct gcttaggcac tgatgtacga       360
     catggtcaac tcggaagaag aaagtgtgtg cttcatttgc gacaaatctg aaaacgatgc       420
     gtcgcaaatg attgaatgtg cctactgtaa taaatsttgt cactttcgtt gmaagaaact       480
     gcacgggaat gcgatctaat caatcgaaaw cgcatagtga tgtggacgtg gttgctgagt       540
     tgcgattgct cacggagact gtgcttgaga tcaaacagga gtctatggtt tctcgttcgg       600
     cgtttgaaga gaccagactt cagatggctg catccatgaa aacaatggaa accamtaaac       660
     atatagaaga gtgataagcg agacaacatc aagctgtgga aagatgtcaa tatgctgcaa       720
     gaccagaatc accaactggt aacgactgtg aatcatttgg aactcgaact agatagagtc       780
     aatcgtgcca tgctctccaa aaatgccgtt attctaggac tcccgtcctt ggaaaacgag       840
     aatacaagga actagtgcgc catttgatga acgtcgtagg agccccaggc aaagatgatg       900
     gcatcgaaga agctaagcgg attcaaagca aaaatgtcag caggaatgcg gttccgatta       960
     tcgtacgttt cagtaacgaa aacaccaaag aggctttctt tgagaagaaa cgtgcatatg      1020
     gagttttgct ggcgtcgtcg atttgtgaag ctttcgctgg gtcatcgaat cgtatcaccg      1080
     tccgtgatga aataacgtcg tatggaaagg accttctcca kaagactaag gagtttcaaa      1140
     cttcgctgga catcaagtat gtmtggatgg gcagagacgg aaaagttctg attaagcgac      1200
     aagatggtgc aaaagtggaa aaaatatcct cttgtgaaga ccttgaaaag ctctccaagt      1260
     tgtctcaaaa acgactacta aacttatccg gtgccagctc aacatcatca cccaaagggc      1320
     cagcagcaaa acgggtttcg gcttaatgaa tatcgttcwt agagcgtagc tgataatatt      1380
     actgaattca acaataaaaa ttactatttt aattctatat ctgakctgaa taaaaatatt      1440
     gtaaacttat cwaaccgtac atcaatattc gaggcatgaa ctcacttgag aaatttgatt      1500
     gcatgaaaga acttctttcg gcgtatactg aagagattga tattgtagtt attggggaaa      1560
     cttggttgaa ggaagcacgt tgtcaacttt acagcataga tggatatwac gctgtttttt      1620
     catgccgttc tgaatctgat ggaggtggat tagctgtata tgttcgtcag tcgctagcgt      1680
     ttgmaaatct ttcaaatgag catctacgag tcgcacagaa tggttctcat gttgatatcc      1740
     acgcaatgta caggccacca tcgtttctta ttccacagtt ttttgatatc ctggagacag      1800
     ttttatcatc cacaaaagga ggtgctccct gtattatagt tggtgacwtt aatctggcaa      1860
     caaatcaatc aaataaccga tcagttgagg aatacctgaa mattttaaac tgctwtaact      1920
     tcasagtcac aaacacacac ccaacaaggc ctactagcaa taatattctc gatcatgcag      1980
     tatgttctga agcgctttcc caaaatgtag tcaatgaaac aattttctcc gaaattagtg      2040
     atcattgttt agtgctcacg acattacaga actgcaggac tgttcgcacc tgtactttgg      2100
     aaaaggtaat agtagaccat acaaaactta acgatgattt cgccactgct gcgcgagtcc      2160
     ttcctccaag aatgacagcc acgcaaaaat tacaacatgt cattaacttg tatcaccagt      2220
     tgaaggaaag gtgctcgaga aaggtatccg ttcaagcgaa gattaaaggt tcatgtccct      2280
     ggatgacgtt tgatctttgg aaaatgatgc agttgaagga caagattcta agcagaagta      2340
     ggagatatcc tcaggatagc cgcgtacaag agcaacttgg tcatgtgtcg aaattgctac      2400
     agcgtactaa agaactagct aaaagatcgt actacggaaa actgtttgaa aatccaaacc      2460
     cgaaaaatat gtggaaaatt ctcgatcaag ttcttggtcg caacatcaat gaatcccaas      2520
     agattgaact tgaacataac ggacgtagtg ttaaggatcc tctgggcgtt gcggaaattt      2580
     tcaacaactt cttcagtgat attggacccc agctagcctc cagcatttcc agtcaacgag      2640
     aaatcaacaa gtttggtagt ctgcgaccta tcagaagctc catttacctg aagcccgcta      2700
     ctaaacaaga agttatcctc cagatcaagg atttagacaa caacaaaagt gctggaccag      2760
     atgggatatc cgcaacattt ttgaagactc atcatgactt tttcgccaac cttcttgcaa      2820
     atgtgttcaa tgaaagcatc aactctggtt cttacccgga cttccttaaa accgcaagag      2880
     tgataccaat tcacaaagct ggctccaaaa aagatccatc caactaccga cccatctccg      2940
     ttctctcggt tttcaacaaa attttggaac gtctcctggt tgacagactc aacagctttt      3000
     ttaaaatcaa cgatgtcctt taccattatc aatacggttt tcgtggtggt tcaaatacgt      3060
     taactgctac cagtgaacta gtggatgaca tctataaggc tatggataag cggaaagtag      3120
     ccggaatcct gtttctagat ctaaaaaaag cgttcgatac gattgatcac gatgttttgt      3180
     tacaaaaact tgacagctac ggtataaggg gaccagcaaa cagattgata aaaagctatt      3240
     taactggaag aagacaatac gttcwactac aaaactgtgc cagtagtaac agaaatctgt      3300
     cagtaggagt accacagggc agcaatttgg gcccacttct attcctattg tacatcaacg      3360
     acttgccgca tcttccctta cacggaaaac ctcgtttatt tgcggacgac acctctatct      3420
     tgtacatatg taacgaagct gaccaaatca tcgatttcat gaaacaagat ctggagaagc      3480
     tcacagaatt cttttctgaa aatttgcttt ctttgaacct gaacaaaacg aaatatgttt      3540
     tgtttcactc accccgtctt accattacga aaaatatcga cctggtggtg aattgcacta      3600
     aaattgatga agtcaattgt tacaaacatc tgggcataac actcgattct tcattgtcct      3660
     ggagtaatca catcgccata ctacaaaaag atgtcagtac aacatgtgga gtattatgga      3720
     agatatctaa atttgtacca tcaaaacaac tgttgctact gtatcatgct tttatacaat      3780
     ctaaaatctg ctatcttgtc tmagtatggg gagcagctag caaaacgaag ctgaagataa      3840
     tccaaaccat acaaaatcgt tgtctgaagg tcatttatag aaaaccgagg ctgtatccaa      3900
     ccattgacct atattcagaa gcagataaat cagtcttgcc agttgctgct ttacgagatc      3960
     tgcaaactct aattcaaatg cagaatctgt tacataatcc gttagcacta cacaaccaag      4020
     agtttccacg cacttctcac cgttacgaaa ctaggaatcc tccggcctta gttataagcc      4080
     gttcaaatac tgaatttggg aaaaaatctt atagtcacta tggtaaatca aggtacaatg      4140
     ccttgccaat acatataagg gctgagataa acccacttca attcaaacac cgtgtaattg      4200
     catggattag atcacagctt tcaaacttta tattgtaaat ctatgagtcc agtgtatcac      4260
     tcgtaaactg ccatcaatgc tcccttcaaa gagttaaggc tcactgggag caaaaagccg      4320
     tagtttcact aaatactaat gctgcaaata cgattttttt atctcttccg cctcctaccg      4380
     cctagcaacg ccaccctata ctgccacccg ctgctgccgc ctaccaccgc cacccactcc      4440
     aacaacgcca ccctccgcca ttcaacgttc tccatcaact ttaatacgtt attgaactaa      4500
     ttgagaaaaa atgtaaaaca tgtatttaat gaaaagatga gaggttttgt gccttttgga      4560
     ggaacaaact tgaaaaaagt ttacctccag ggggttttcc tactccttaa taaataaata      4620
     aataaaataa ata                                                         4633
//
ID   Crack-31_AAe repbase;    DNA;    INV; 5283 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-31_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5283
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1247-1247 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           922..1989
FT                 /product="Crack-31_AAe_1p"
FT                 /translation="MDTDDVYICNICSKKDTDGSKFLTCMYCLTSSHFKCK
FT                 NIVGNAVRRMRDTEYFCSSDCSAIYQRIVTMQNTNHSLMSSFAAEMKATVS
FT                 ASIAKEMLSVKADVKQITTSIEKSQEFLSAKFDEIVTDFKDLKLENEKLKE
FT                 EIDHLKKSQHQLQGMVHKLEANVDRSDRASLVNKAVVWGIPTVPGENVLQL
FT                 VEKILLYLGLREPSELVASAERIFVNTKASNELVPIRIVFHDSESKEAVFN
FT                 KKKQFGKLLSTAIDKTFNVNGKPMNVTLRDELSPLSLELLKELREHQEMLN
FT                 VKYVWAGRGGVVLVKKDDGSKPEIVKTREDLSRIMNRFLLSTHGPDDANAS
FT                 GHSPSPKRRKNVQ"
FT   CDS           2036..4939
FT                 /product="Crack-31_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFKMDTLPNMIVNKYYNSLNAFNQNCGMNNNCLNVIQ
FT                 WNVRGMNNFEKFDELIYFVNECKIDIDVIIVGESWLKKENICVYNIPGYRA
FT                 FFSCRDSSSGGLAVFIRTSLEYKLIDNKTIDGLHYVHLEIKFRGNFLNVVG
FT                 VYRPPSFDYNEFQNILEGWLSTSTSSKPFFLFGDVNVPINMQNNNIVIRYK
FT                 NLLESYGYLCANTIPTRPISNNILDHCICPMDLASQFQNYTIFSDMSDHLP
FT                 VISSLPFGVGKRQQELKIKMVDHEKLRTQFSILLNNLQITDDVDATLYTLV
FT                 TSYNSLLLECTKTVTKIVKIKGVHCPWMTYGLWRLIQIKNNYLEKHKINPN
FT                 DRRNTEMLAHVSKKVKNAKIRCKRVYYENILKSSSHANVWKTLNQIFGRSK
FT                 ETDQIKLLKDGRLLDSEYDVAEVFNSFFSSIGNNLADKLPNDNYDFLKTVK
FT                 HVSNTIFLRPTTTNEVRILISRLDGRKSKGHDNFPADLLKANIEPFSVILA
FT                 KLFNKMITTGSYPNILKIAKVTPVFKSGDKQDPSNYRPISTLSVLNKILEK
FT                 LLTCRLVSFLCANNVFYKFQYGFREGCGTTTAIIELIDELISQIDQKNIVG
FT                 GLFIDLKKAFDTINHEILLKKLDRCGIRGIANNLIRSYLSNRKQFVVINGV
FT                 RSSLRPIDIGVPQGSNIGPLLFLVFINDLGNLRLRGIPRLFADDTALFYPQ
FT                 ANVQLIVNDIEKDLESLIEYFNGNRLSLNLAKTKYMVFHSSRKSIPQHPDP
FT                 CVRNVHLEKVSSFKYLGLHLDPCLSWDCHIRNVSGKMASLCGLVKRVRSFV
FT                 HKDVLMQFYYACIHSILQYLIIVWGHAAKSKIRRLQVLQNRCLKVIFNLSP
FT                 FFPTFSLYSNLNHKVIPVLGLRDCQTIMYVHNTLNNRSFHHNISFPYRLNI
FT                 HNTRHAFELSRSRAYTNLGLERITSYGPLKFNSLPNDLKNIINNIHFKSKL
FT                 KQHLLRNVNDYLL"
XX
SQ   Sequence 5283 BP; 1649 A; 887 C; 981 G; 1760 T; 6 other;
     ctggcaacac tgttgtatgg ttgacacgca atctttasct tcccgcgttt taaattcagt        60
     ttaattgtgt ataaacttaa attaattctt gatttttgtg cgattgtaaa gtgataacgt       120
     tgttgtgcaa gctaaatggt gttatggttg tggctactat ttgaatacta ctgaaaaaac       180
     agattgttat gcccattagt gatcttgata aaagggtcta ttgttttttt gtgtgattca       240
     ttctgaacgc gctcctgctt gttgttgctg ctgttgttat gctgtcgatg ctgtattgaa       300
     acgaaaaaaa ttgtcggtga aaatataacg aattgagtag aagttaattg twagtacacc       360
     tatagataca ctttgctagt gtcgtcgatt ctttcaaagg tttatcgtgc tattctttgc       420
     cgcccaaacg gccacttgac aagcgaaaac atttgttagt tatctgattg atgctcattg       480
     tggtctcgct ccctagacaa aaaaagcttg tatttgtgat acttcttgcc gcccaaacgg       540
     ctacttgacg agcaaagtgc tttggtcctg gttgagcggt ttagtctggt aggctggaaa       600
     acaaacttca acgttcgttt tacagactag ccgtggatac tagagttcat gttcagcatt       660
     ggttgtcgtt attgttgtgg ttattattca cgcacaaaaa aaccgtagga ctttttatta       720
     aatgtttgta tctggcaaca cctatctgtc gttattctag tacttcaccc cattsaacca       780
     aatagcttgt gtgtttcaat tttgttctga ttttacgttt tagtattagt tcgtgttgct       840
     cctcatatag attgtttatt tacattcctg tttgttgata tttttttgct tcagcttgct       900
     ttttcatcta aamtttgcat aatggataca gatgacgttt atatctgcaa tatttgttca       960
     aaaaaagata cggatggctc caaattttta acgtgtatgt actgtttaac gagttctcat      1020
     tttaaatgta aaaacattgt tggaaatgct gtgcgtcgta tgagggatac cgaatatttt      1080
     tgttcatctg attgttctgc tatttatcaa cgaatcgtaa ctatgcaaaa tactaatcac      1140
     tccttgatgt cttcgtttgc tgctgaaatg aaagcaactg tttcagcatc tattgctaag      1200
     gaaatgctgt cggttaaagc agacgttaaa caaatcacaa cttcaatcga aaaatcccaa      1260
     gaatttttat cwgctaaatt tgatgagatt gtcaccgatt ttaaggatct aaagctagaa      1320
     aatgaaaagt tgaaagagga aatagaccat ttgaaaaaat cgcagcatca gttacagggt      1380
     atggtacata agttagaagc taatgtggat aggtctgaca gagcatcctt ggttaacaaa      1440
     gctgttgtgt ggggtattcc tactgttcct ggtgaaaatg tactgcagtt agtggaaaaa      1500
     atactcttgt acttaggact cagagagccc tctgaacttg tagcatctgc tgagcgtatt      1560
     tttgtcaaca ccaaagctag taacgagctg gttcctatta gaattgtatt ccatgatagt      1620
     gaatcaaaag aggcagtgtt caataagaaa aaacagtttg gaaagttact ttcaacagcc      1680
     atcgataaaa cgttcaatgt taatgggaaa ccgatgaacg taacattacg agatgagttg      1740
     tctcctctct ctttggagct tttgaaagag cttagagagc accaggaaat gctgaatgtt      1800
     aagtacgttt gggctggtag gggcggagtt gtgttggtta agaaagatga tggcagtaaa      1860
     ccagagattg ttaaaaccag agaagatctt agtcgtatta tgaatcgctt cttgctgtct      1920
     acacacgggc ctgatgacgc taatgcttct gggcattctc cgtcacctaa gcgtagaaaa      1980
     aatgtacagt aaaataattt caagaataat ttcgattagt agtataaata cctaaatgtt      2040
     taaaatggat accttaccga atatgattgt aaataagtat tataatagtt taaatgcttt      2100
     taatcaaaat tgtgggatga acaacaactg tttgaatgtg atccagtgga atgtaagagg      2160
     aatgaataat tttgagaaat ttgatgaatt gatttatttt gtgaatgagt gtaaaataga      2220
     tattgatgtc ataattgtcg gtgaatcgtg gttgaaaaag gagaatattt gtgtttataa      2280
     cattcctggt taccgtgctt ttttctcatg ccgtgatagt tcgtctggtg ggttagctgt      2340
     ttttataaga acatctttag aatataaatt gatagacaac aaaactattg atggcttgca      2400
     ctacgtgcac ttagaaatca aatttcgtgg caactttctc aatgttgtcg gtgtttatcg      2460
     tccaccatca tttgattaca atgaatttca aaatatttta gaaggctggt tatcaacctc      2520
     cacgtcgtct aaaccatttt ttctttttgg cgatgtaaac gttccaatca acatgcaaaa      2580
     caacaacata gtaattcgtt ataaaaattt attagaatct tacggatatt tatgtgcaaa      2640
     tactattcca acgcgcccaa taagtaacaa tatcttagac cactgcattt gtccaatgga      2700
     tcttgcttca caattccaaa attacactat atttagcgat atgagtgatc atcttcctgt      2760
     gatttcgtct cttcctttcg gtgttggtaa aaggcaacaa gaacttaaaa taaaaatggt      2820
     agatcacgag aaactgcgaa cccaattttc aatcttgtta aataatcttc aaatcactga      2880
     cgatgttgat gctactttgt acactcttgt cacaagttat aattcattat tgcttgagtg      2940
     tactaaaacc gtaactaaaa ttgtcaaaat taaaggagtw cattgcccat ggatgactta      3000
     tggcctctgg cgattgatac aaataaaaaa taattatctt gaaaaacaca aaattaatcc      3060
     caatgataga cgtaatactg aaatgctggc tcatgtttct aaaaaagtta aaaatgcgaa      3120
     aatacgatgc aaaagagtat attacgaaaa cattttgaaa agttctagcc atgccaatgt      3180
     gtggaaaacc ctcaatcaaa tatttggccg ttctaaagag accgatcaaa taaagttact      3240
     taaagatgga cggttattag attcagagta tgatgttgcc gaagtattca atagcttttt      3300
     ctccagcatt ggaaacaatt tggccgataa attgccaaat gacaattatg attttttaaa      3360
     aactgtaaaa catgttagca acactatatt tctcagacca acaaccacga acgaagttcg      3420
     tattttgata agccggcttg atgggagaaa aagcaaaggg catgacaact ttccagcaga      3480
     tttgttgaaa gctaacatag agccattttc agtaatcttg gctaagctct tcaataaaat      3540
     gataacaact ggatcttatc ccaatattct aaaaatcgca aaagttacac ctgtattcaa      3600
     atctggagac aaacaggatc cctctaacta tcgcccaatt tctactttgt cagtcctgaa      3660
     caaaattttg gagaaacttc taacatgccg gcttgtaagt tttttgtgtg ccaacaatgt      3720
     attttataaa tttcaatacg gctttcggga aggttgtgga actactactg caattattga      3780
     gcttattgat gagttgatca gtcaaataga tcaaaaaaac attgttggag gtcttttcat      3840
     tgatttgaaa aaagcttttg acacaataaa ccacgaaatt cttctgaaaa aactcgacag      3900
     atgtggtata agaggaatcg caaacaatct tataagaagt tatctttcaa ataggaagca      3960
     atttgttgta ataaatggcg ttcgtagtag tttacgccca attgatattg gagtgcccca      4020
     agggagtaac attggtcctc tattgttttt agtttttatt aatgatttgg gtaacttaag      4080
     acttcgagga attccaagac tttttgcgga tgacactgca ttgttttacc cgcaggccaa      4140
     tgttcaacta attgtcaacg atattgaaaa ggatcttgag agtctcatag aatacttcaa      4200
     cggcaatcgt ctttcgttaa atctggcaaa gacaaagtat atggtttttc attcttcccg      4260
     taaatcaata ccgcaacatc ctgacccatg cgtcagaaat gttcatcttg aaaaagtttc      4320
     atctttcaaa tatttaggtt tgcatttgga tccttgcctt tcgtgggatt gccacataag      4380
     aaatgtatca ggtaaaatgg cgtcgttatg tggactagtg aaaagagtac gttcttttgt      4440
     gcacaaagat gtactaatgc aattttatta tgcttgtatc cattcaattc ttcagtatct      4500
     cattattgtc tggggtcatg ccgcaaaatc gaaaattagg agattacagg ttttgcagaa      4560
     cagatgcttg aaagtcattt ttaatttatc tccattcttc ccaacatttt cgctctacag      4620
     taatttgaat cacaaagtca tccccgtact tggattgcgc gattgccaaa caattatgta      4680
     tgtacacaat actttgaaca accgcagttt ccatcacaac atttcttttc catatagatt      4740
     aaatatccat aatactagac atgcatttga gctttcgaga agcagagcat acacgaatct      4800
     ggggctagaa cgtatcacca gttacggccc tttaaagttt aattcacttc caaatgattt      4860
     aaaaaacata attaacaaca ttcattttaa aagcaagctc aagcaacatt tactgaggaa      4920
     tgtaaatgat tacttactgt aacgtgtcaa ccatttaata atgtagggtt tttctggctc      4980
     atgctagttt ttacctgcat aattttctta ctcgtagtta tttacttttt gttatattaa      5040
     gccacaatcg ttatcactgt agtttgtaat atgtttatca atctgttata tattccttat      5100
     gtctgtgaat cccttcaaag gaacaatttt ccactgggat ttcacactgt ttgtatatgt      5160
     tattcaaacc tccgcgtatt agtttaaaat tgttttatac aagtaagtgt ccactaccag      5220
     ggggctctct gtgtgagctc tttggtgtgg gggtcagtgg tgggtcttaa aaaaaaaaaa      5280
     aaa                                                                    5283
//
ID   Crack-32_AAe repbase;    DNA;    INV; 4194 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-32_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4194
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1248-1248 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..460
FT                 /product="Crack-32_AAe_1p"
FT                 /translation="MKNEEVVEAKPLAVSSTNSSPPIVVIFNSEEAENVFF
FT                 DGKRKHGTXMVSEIAGSFSGVTSRVTIRDAMTTYARELLKEAREKQEMLGM
FT                 KFIWPGRSGKILMKRHEGSNVEQILTKQQLHEFIKSGNSGSGNPKHHS"
FT   CDS           527..3406
FT                 /product="Crack-32_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANYFYNDFSELNKNQLNVMNCRFKLKILQLNIRGMN
FT                 NLYKLDRIKEVLATIRGNIDVLVLGETWIKEDRKRIYSINGYKSLFSCREG
FT                 SQGGGLVIYVRESIAYREISNEHCNGFHHLQIHLDVAGSPFVLHAVYRPPS
FT                 YNTNDFFSKLESMLASSRSYVCAIIGDINIPINISTCSIVQEYLSLLNCYN
FT                 FTPTNTYPTRLASSNILDHVICSEALQSCVVNETVYCEISDHCYVLSTFSL
FT                 LKPLSEKVLKTTIVDHMRLNNAFVASVHQMPQGSAEDKLKYVIQSYNDCRD
FT                 RFSKIVTVKARIKGFCPWMTLNLWKWIRLKENYIKRSRRYPTDNEAKRMLD
FT                 HVSRRVQKEKEKAKRAYYXTMFNGSSQKEMWKNLNRTLGNXNKSNDDVILQ
FT                 IDGQDIPTGEGVANHFNKFFTSIGPQLASSIRSDMDVNKYNTLQRLPESLF
FT                 LRPTTEQEIILKIQKLDANKCAGPDGIPAAFVKSHHQIFSNLLRDVFNDCV
FT                 STGHFPDFLKVAKVTPIHKSGSRADVNNYRPISVLSVLSKILEKLLVDRLV
FT                 DFLHVHHVLYNNQFGFRSGSSTLTAANELVDDIYEAMDTRRIMGVLFLDLK
FT                 KAFDTINHELLLKKLEFYGVRGTCNALIRSYLSGRTQYVSVNGSRSTLSSV
FT                 QVGVPQGSNLGPLLFLIYINDLANLKLYGKPRLFADDTSLSYKAGDPNDII
FT                 QQMKSDMELLHGFFNENLLSLNLSKTKYMIFHTSRLRVASHPDLLVNSTKI
FT                 EKVSSFKYLGLVFDSNLKWNDHIRKLHMEISSICGIMWRLSTILPHKQLLT
FT                 LYHAFVQSKLTYIVSIWGAASQTNLRKLQTLQNRCLKIVYRKPRLYPSVDL
FT                 YKNSALSILPIAALRMQQNVTQLHNLLFNPIVHHNQDLSRAPHRYNTRNQS
FT                 DLLLQRSNTDAGKKRFAYCGKKQFNDLPDYLKDEQNVQRFRKNLKLYMKSN
FT                 IGQYI"
XX
SQ   Sequence 4194 BP; 1310 A; 896 C; 840 G; 1141 T; 7 other;
     tgaaaatgtt gtggatattg tgttcagtat aggaagagct tgtgattgtc cgatgaaaaa        60
     cgaagaggtc gttgaggcta aacctctggc cgtctcatct acwaattcga gtccgccaat       120
     agtcgtcata tttaattcgg aggaagccga gaacgtgttc tttgatggta agcggaagca       180
     cggtacgktg atggtatcgg agatcgcagg aagtttttct ggagtgacaa gcagagtaac       240
     catccgagat gcaatgacca catatgcaag agaactactg aaggaagcca gggagaagca       300
     agaaatgtta gggatgaagt ttatctggcc aggaagaagc gggaaaatct taatgaagcg       360
     tcatgagggt tctaatgttg agcaaatcct gactaagcaa caattgcatg agttcatcaa       420
     gtcaggaaat tctggatcwg gaaatcccaa acatcattca taagttgaag cataaaaact       480
     gccttaaatt aagtcgacaa ctgataaacc ggaactcctt attgtaatgg ctaattattt       540
     ttataatgat ttctctgaat tgaataaaaa tcaactgaac gtaatgaatt gtcgwtttaa       600
     attaaaaatc ctgcagttaa atatacgagg tatgaataac ttgtataagt tagaccgtat       660
     taaggaagta ttggcaacga ttcgtggaaa tattgatgtt ttggtgttag gagaaacatg       720
     gatcaaggag gatcgtaaaa ggatttattc tataaatggt tacaaaagtc ttttctcgtg       780
     tcgtgaaggc tctcaaggag gtggtttggt tatttatgtt agagaatcaa ttgcatatag       840
     agaaatatcc aatgaacatt gcaacgggtt ccatcatctt caaattcacc tggacgtcgc       900
     tggatcgccg tttgtgctgc atgctgttta ccgtccacca tcctataaca caaatgattt       960
     cttctctaaa ttagagtcta tgcttgcatc atcgaggtcc tacgtctgcg cgattatcgg      1020
     ggacataaat attccaatca acatatcaac gtgcagcatt gtgcaagaat acctaagtct      1080
     gttgaattgt tacaacttca cacctacaaa tacataccca accaggctgg caagtagcaa      1140
     catattggac catgtaatat gttcagaagc tctgcagtcc tgtgtggtta atgaaactgt      1200
     atactgtgaa ataagtgacc actgctatgt cttgtcaaca ttctcgctgc ttaagccact      1260
     gtcggaaaaa gttttgaaaa caactattgt ggatcatatg cggctgaaca acgcctttgt      1320
     tgcttctgtg caccagatgc cgcaaggctc tgcagaagac aaattgaaat atgtcataca      1380
     gtcatataac gactgccgcg acagattctc aaaaattgta acagtgaagg caaggatcaa      1440
     aggtttctgt ccatggatga ctttaaacct ctggaaatgg atacgattaa aagaaaatta      1500
     tattaaaagg tcccgtaggt accctaccga taatgaagct aaacggatgc tcgatcatgt      1560
     gtcaagacgc gtgcagaagg aaaaagaaaa ggccaaacgt gcgtattatk taactatgtt      1620
     caacggtagc agccaaaaag aaatgtggaa aaatctcaac agaacacttg ggaatwmcaa      1680
     taagtcgaac gatgatgtta ttctccaaat tgatggacaa gacattccaa ctggagaagg      1740
     cgtagcaaac catttcaaca aattcttcac ttctatcgga ccccagcttg catcatctat      1800
     caggagtgat atggacgtga acaaatataa cactcttcaa aggctgcctg aatcactgtt      1860
     tctacgtccc actactgaac aagaaatcat tttaaaaatt caaaaattgg atgctaataa      1920
     atgtgctgga ccggatggga tacctgcggc atttgttaaa tctcatcatc aaatcttctc      1980
     aaatttgctt cgagacgtat tcaacgactg tgtgtcaaca ggacacttcc cagacttcct      2040
     gaaagttgca aaggttacac ctatacacaa atccggtagt cgagcagatg ttaacaacta      2100
     tcgaccgatt tcggttctct ctgtgctcag caaaattttg gaaaagttgc ttgtggatag      2160
     attagtggac tttcttcacg tccatcatgt actgtacaac aaccagtttg gctttcggtc      2220
     aggttctagc actctcactg cggcaaacga gttagttgat gacatttacg aggctatgga      2280
     tacacgaagg attatgggtg tacttttcct agacttgaag aaggcgttcg acacaatcaa      2340
     tcacgagttg ctgcttaaaa aacttgagtt ctatggcgta cggggaacat gtaatgcgct      2400
     gattagaagt tacttatctg gtcgaaccca atatgtttcg gtaaacggat ctagaagcac      2460
     cctgtcatca gtccaagtag gtgtaccgca gggtagcaat ttaggccctc ttttgttctt      2520
     aatttatata aacgacctcg caaacctcaa gttatacgga aaaccgcgcc ttttcgctga      2580
     tgatacttcg ttatcatata aagctggaga tcccaacgac ataattcagc aaatgaaaag      2640
     tgacatggaa ttgttacatg ggtttttcaa tgagaatttg ctatctctaa accttagcaa      2700
     aacaaaatac atgatatttc atacatctcg actccgagtt gcatctcatc ctgatcttct      2760
     tgtcaactca acgaagattg aaaaagtctc aagtttcaag tatctgggcc tggttttcga      2820
     ttcaaatctc aaatggaatg accatatacg taaactacat atggaaataa gttctatatg      2880
     tggtataatg tggagattat caactatttt accacacaag caacttctca cgttatacca      2940
     tgcattcgtg caatccaagc tcacgtacat cgtatctatt tggggagctg ccagtcaaac      3000
     aaatttacgg aaactacaaa ctctacagaa ccgctgtctg aagattgtct accgcaaacc      3060
     gcggctttac ccatcagttg acctttacaa aaactctgca ttgtcaattc taccaatcgc      3120
     cgcactccgt atgcagcaaa atgtgacgca attgcacaat ctgctgttca atcctatcgt      3180
     gcatcacaat caagatctat ctagagctcc gcatagatac aacacaagaa atcaatcgga      3240
     cttgctgctg caacgctcaa atacagatgc agggaaaaaa cgattcgcat attgtggcaa      3300
     gaaacaattc aatgatttgc cggattattt gaaggatgaa caaaatgtac agcggtttag      3360
     aaaaaatctg aaactttaca tgaaaagtaa cattggtcaa tatatatgat ggaacgtatg      3420
     caaaacaatc tctatggcaa ccacttctgc ctctgaatcc tgctcaagtt tccagccgaa      3480
     tctctaaact gcatcgccgc tctgtatccg tgcgcaaact cagtccccgt ccaacagaca      3540
     acttctgcat tcactcacct actggtgaca tgggacgcat ctatcaggca tctcgagagc      3600
     ccctgctcac tccaagctac agcaacccat ctccacatct gcatcgaaaa catctatcag      3660
     gcaccttgag agctcctgct cgctccaacc tacaccaact catttccgca tctgcatcgg      3720
     aagtgcattc atcgcagtca tccgtcgttc ccggttgcat ggtttggaga gagagtaggg      3780
     gtctctcagc ctgcaactgc aggcaagtaa cgtgaagttt cctcatcttt ctgcctctga      3840
     atcctgctcc agttttcagc cgaatcttga actgcatcgc cgctccgtac tcatgcgcaa      3900
     actcagtcac cgtacaacag acaacttctg cagtcactca cctcctggtc acatgggacg      3960
     catctatcac ctcgtcaatt tcgtcaattt cagcagatca ttactttagt gaaaagtatt      4020
     tcaatgtagt ggcaatggca cttccttcaa agagactaag tctcactgga agtgctaatg      4080
     aattgtaaat tacttagaaa agaagaggag gttttatgcc tttcggagaa gaggttcaaa      4140
     aggaacttca ctccgagagg cttttccctg ctccaaataa aacaaataaa aaaa            4194
//
ID   Crack-33_AAe repbase;    DNA;    INV; 4113 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-33_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4113
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1249-1249 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..853
FT                 /product="Crack-33_AAe_1p"
FT                 /translation="MIDTLASELKATVASIVTQQMVNVKSEVRLVTAAIEN
FT                 SQDFLSAKFDNIVSEFKNLEAENERLKQQINDLSSSHSKLANIVYQLESNA
FT                 DKYDRKSVSNNAILLGLPQVPNECVMPLVEKTVAHLGVDLPNGSIVSAAXL
FT                 YHSNKPNTVVPIQITFSDKNIKELVFSKKKNMGTLLSTSIDHSLLINGRPT
FT                 SVSLRNELTPLSLELLRKMREYQKELXIQYVWPGQLGGILVKKSDNCKPDV
FT                 IKTREDLSRVIEKYTLFEKDTVSPNQGRNNQIQMHFK"
FT   CDS           912..3797
FT                 /product="Crack-33_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAQQLNFFHNHIDEFNVTQRRNNTKQLRILQWNVRGI
FT                 NDLCKFDEILLAIDHFVYPVDVIIVGETWLKAGNTSLYTISGYNSIFSCRN
FT                 NSSGGLAMYIKSTIDYKIIENISCDGFHHISVELTSNGANFIVHGVYRPPS
FT                 YDFNLFHDRLEGWLNESCTNQPCLIFGDVNVPVNLSNNNVVLKYKYLLQSY
FT                 NFLCCNSFVTRPASSNILDHVLCKMSDAHRLTNHTILSDLSDHYLILSEFE
FT                 LHIGSHATILTKNIVNHDRLELEFKNYIDNLGPVLNVDFCLETIISKYNTI
FT                 LKDCTKTISKTANIKNTQCPWMNFDLWTLIKIKSNYLKKCRRDPNNVQLAE
FT                 CLKHVSKKLDTAKKLAKKRYYENLLNNASPSKMWKNINKILGKSVNESKLS
FT                 LVVDGVVTIESASICERFNDYFSEVGPKLAEKIGSTSRNPLRRITPIPDSI
FT                 YLQPSTENEVILLINDLKVNKSPGPDNVPARIIKNNANSFSRILSESFNLM
FT                 IQTGSYPECLKTAKVVPVFKSGDTRRIDNYRPISTLSVFNKILEKLLINRL
FT                 VSFLERHNVLYSFQYGFRNGSSTTIAITELVDKILQETDANKMVGALFLDL
FT                 KKAFDTLDHGILLRKLDHYGIRGIANNILSSYLANRKQFVSHDGSQSSYKS
FT                 LRTGVPQGSNIGPLMFLIYINDICKLHLSGVPRLFADDTALFYPNVNANII
FT                 INSMQEDLLLLQNYFAENLLTLNLHKTKYMVFRSPRKTIPALPRLVLGDDI
FT                 IEKVDCFKYLGVHFDSTLSWDHHIQIVASKMSSMCGVLNRIGKFLPRKALL
FT                 MFYFAHIHSHLNYVIVSWGRACKSKLKKLQTLQNRCIKIIFKLPLLFPSVR
FT                 LYSDFPHNILPVTALCEEQTLILIHKILHSPTTLNNLPITIIPRIRNSRQA
FT                 NHVTRTRAFSNFGQNRFSFIGPTKFNALPRNLQQITNLISFKTNLKRHLQT
FT                 QIFQLLI"
XX
SQ   Sequence 4113 BP; 1348 A; 720 C; 712 G; 1327 T; 6 other;
     tcaggacaag cgatcatcaa tgattgacac tcttgcttct gaattgaagg ctactgtagc        60
     tagtattgtc actcaacaaa tggtcaatgt gaaatccgag gtgcgtttag taactgctgc       120
     tatagaaaac tcgcaagatt ttctatctgc aaaatttgat aacattgttt cagagtttaa       180
     gaatctcgaa gctgaaaatg aaaggctcaa acaacaaatc aatgatttat ctagctctca       240
     ttctaaactg gctaatattg tttatcaact tgaatctaac gccgataaat atgatcgwaa       300
     gtcagtatcs aacaatgcaa tcttgctagg tttgccacaa gtgccaaacg agtgtgtaat       360
     gccattggtt gaaaaaactg ttgcgcatct tggcgtkgat ttacctaatg gttcaattgt       420
     gtctgctgcg agkttgtatc atagtaacaa gccaaataca gtagtaccta ttcaaatcac       480
     tttcagcgat aagaatatca aggaattagt attctcaaag aaaaaaaaca tgggcactct       540
     tctttccacc agcattgatc actcacttct aatcaatggg agaccaacca gtgtgtcgct       600
     taggaatgaa ttaacacctt tgtcattgga acttctacga aaaatgcgag aatatcaaaa       660
     agaattgmaa attcaatatg tttggcctgg gcaacttgga gggattttgg ttaaaaaaag       720
     tgacaattgc aaaccagatg taattaaaac aagggaagat ttaagccgcg tcattgaaaa       780
     gtatacattg ttcgagaagg atactgtttc accaaatcaa gggaggaata atcaaatcca       840
     aatgcatttc aagtaacctt cttaagttgt tttttktttg ttttttcatg tatttttgaa       900
     ttattgttag aatggctcaa cagcttaatt tctttcacaa tcacattgat gagttcaacg       960
     tgacacaaag gagaaataat accaaacagc tacgaatatt gcagtggaat gttcgaggta      1020
     ttaatgacct ctgtaagttt gatgaaattt tgttggcaat cgatcatttt gtgtatcctg      1080
     tcgatgtaat aattgttgga gaaacgtggt tgaaagcagg taatacttca ctctatacga      1140
     ttagtggcta taatagtatt ttttcctgta ggaacaactc atctgggggg ttagcaatgt      1200
     atattaagag caccattgat tataagatca ttgaaaatat atcctgtgac ggttttcacc      1260
     atattagcgt tgaattaaca tcaaatgggg caaatttcat tgtccacggg gtgtatcgtc      1320
     caccatctta tgattttaat ttgtttcacg atcgtctaga aggttggctg aatgaaagtt      1380
     gtaccaatca accttgttta atttttggtg atgttaatgt accagttaat ttgtctaata      1440
     ataatgttgt tttaaaatat aagtatcttt tgcagtccta taattttctt tgttgtaatt      1500
     cttttgtcac aaggcccgct agttcaaata tattggatca tgttttgtgt aaaatgtccg      1560
     acgcccatcg tctcactaat cacaccattt taagtgattt aagtgatcat tatttaatat      1620
     tgtccgaatt tgaattgcat attggttcac acgcaacgat attaacaaaa aatatagtta      1680
     atcatgatag actagaatta gaatttaaaa attacattga taaccttggc cctgtgttaa      1740
     atgttgattt ctgccttgaa acaataatct cgaaatacaa tacgatactc aaagattgta      1800
     caaaaacgat atcaaaaact gcgaacatta aaaacacgca gtgtccctgg atgaactttg      1860
     acctgtggac cctaattaaa ataaagagca actatttaaa aaaatgtcgc agagatccaa      1920
     acaatgtcca actagctgaa tgtttgaaac atgtttcaaa gaaattggac acagccaaga      1980
     aactagcgaa aaaaagatat tatgaaaatt tattgaacaa tgcttcgcct tctaaaatgt      2040
     ggaagaatat caacaaaata ttggggaaat ctgtaaatga atctaaactc tctctggttg      2100
     ttgatggcgt cgtcaccatt gaaagcgctt caatttgtga aaggtttaat gactactttt      2160
     cggaagttgg tcctaagcta gcagaaaaaa ttggttctac ttctagaaat ccactgcgac      2220
     gaattactcc cattcctgat tcaatttatt tgcagccatc gacagagaat gaagttattt      2280
     tattgatcaa tgatctgaaa gtgaacaaga gtcctggccc tgataacgtc ccagctagaa      2340
     taataaaaaa caatgcgaat tctttctcac ggattttgtc tgaatcattc aatttaatga      2400
     tacaaacagg ttcataccca gagtgtctaa aaacagcaaa agtggttccg gtattcaaat      2460
     caggtgacac tcgtagaatc gataattatc gtcctatttc gaccctttct gtgtttaaca      2520
     agattctgga aaaactgtta atcaatcggc ttgtgagttt tcttgagagg cataatgtat      2580
     tgtattcgtt tcaatatggt ttccgtaatg gaagcagtac aaccatagct ataacagagc      2640
     ttgtggataa aatccttcaa gaaacagatg ctaacaaaat ggttggagct ttgtttctgg      2700
     atttgaaaaa agctttcgac actctcgatc atggcatttt gttgagaaaa ttggatcatt      2760
     acggaattag aggaatagct aacaacatct taagcagtta tttagcaaat cggaaacaat      2820
     ttgtttcaca tgacggttcg caaagctctt acaaatcgct tagaactggc gtcccacaag      2880
     gaagcaacat aggtccacta atgtttctca tttacattaa cgacatttgc aaactgcatc      2940
     tatctggagt tcctaggttg tttgctgatg atacggcgtt gttttatcca aatgttaatg      3000
     ctaatattat tataaacagc atgcaggaag acttgttact tctccaaaat tattttgcag      3060
     aaaacctcct cactttaaat cttcataaaa ctaagtacat ggtttttaga tcccctagga      3120
     aaaccattcc agctttacca cgcttagtac taggtgatga tataatcgag aaagtcgatt      3180
     gcttcaaata tcttggagtt cactttgact ctaccttatc ttgggatcat catatacaga      3240
     tagtcgctag taaaatgtct tctatgtgtg gagttttaaa ccgaattgga aaattccttc      3300
     ctagaaaagc attattgatg ttttattttg cgcatattca ttcccaccta aattatgtaa      3360
     ttgtatcgtg gggcagagca tgcaaatcaa agcttaaaaa attgcagaca cttcaaaaca      3420
     ggtgtattaa aataattttc aagctaccat tactttttcc ttcggttcgt ttatattccg      3480
     attttcctca taacattctg cctgtaacag cgttatgcga agagcaaaca ttaatattaa      3540
     tacacaaaat attacactct ccaaccactt tgaacaattt gcctattact attatacctc      3600
     ggattcgcaa ttccaggcaa gccaatcatg tgacaaggac tcgtgcattt tctaattttg      3660
     gtcaaaaccg gttttcgttc ataggcccaa caaaattcaa cgcacttcca agaaatcttc      3720
     agcaaataac aaatctaatt tctttcaaaa ctaaccttaa acgtcacctt caaacccaga      3780
     ttttccagtt attaatttag ttaaatctta ttctttattt gtatatatat gtaaaccacc      3840
     ttcaaacaat agatatttta ttattaaata gtttgtaatt catatgtgct tctttaaaag      3900
     gataacatat ccactagaag cacttctttt atgtaatttt gttaatatgt cattactttc      3960
     cttgcttaat tgtcccaacc agtagtttaa tgtttattat tttgtagtgt tgcctgcggt      4020
     tgggacttga gtgtccacta ccagggggct caagacattg agctttttgg tgtgggggag      4080
     agcggagggt cactcaaaaa aaaaaaaaaa aaa                                   4113
//
ID   Crack-34_AAe repbase;    DNA;    INV; 4867 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-34_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4867
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1250-1250 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1167
FT                 /product="Crack-34_AAe_1p"
FT                 /translation="MWYYLDDRSEEKCIISCYMVCSAVNSNQYLCSHCSGI
FT                 VTVSNVYIEIFHDVIRVLSFCWCFTIRFGSTQIIKSAREYKWVTELVVNMF
FT                 EDCIICVTCRKEEKDVKKVIECGYCHKCEHYDCKNVFGSAVRKLRSQPYFC
FT                 SLQCSELHQQTKSTVEADSQMHRDIQLVLKEVRETRAEMHAVKNTVGDMEK
FT                 FQSFLSEKLDTLLGEIQSTKSDHKALKTDVENLTFQQQSVCDRVDRLELDL
FT                 DRINRSTVSQNAVIIGIPAVDNENPNEIVRKVAAAVGCQLPDDAILDVKRL
FT                 LPKNANRDARPSSARPAPIKVCFKTVCHKEELLSKKKKSRIAASVGCQPFN
FT                 C"
FT   CDS           1491..4367
FT                 /product="Crack-34_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYCNRAYDCVDDWIANKSILAHLNCKILQINARGINV
FT                 LSKFDCIKELLERSRERFDVVVICETWIKPDRTHLYQIEGFVGIYSCRNES
FT                 HGGLAVFTRADLHVEVLANRTIDGFHHIHCQFKSLSSPVDLHAVYRPPGFE
FT                 VRRFFSELENIISAVRNGQKCILVGDTNIPTNMTSNNIVGEYIRLLASYNL
FT                 VVTNTNTTRPASNNVLDHVICTDTLAEKVVNDTICTDLSDHSFVVSSIDMS
FT                 CHTTKKTLSKQITDHNRLNDLFRQSMINLPLTMTANETLEYVIERYKSHLK
FT                 ECTRTVTCQAKVKNNCPWMTLELWRLIKVKDKQLKISRANPTDERASTLLT
FT                 HVSKMLQSKKAQCKREYYLRIINRNQQRNTWKLIKDVSGRSASKNSVRKIR
FT                 KNDQTITDPLQMCTAFNEYFCNIGNQLASTIPSNRNIHRFDTIQTASSSMY
FT                 LRPSTPNEIILLINGLDIKKSAGHDKISTTFVKVHHDFFAELLHHVFNEII
FT                 QTGQYPSCLKQARVIPVLKSGDPTELNNYRPISTLSVIDKILEKLLVARLV
FT                 EYLSRFDLMYSRQYGFRRGSSTLAATCDLVEDLYDSLDNRKLAGALFIDLK
FT                 KAFDTVDHNLLIEKLECHGIRGTPKQLLESYLAGRTQYVYMDDCESPPLPI
FT                 TIGVPQGSNLGPVLFLLYINDLCRLNLHGKLRLFADDTSLSYNGNDCASIL
FT                 RYIKEDIELLMEYFSENMLSLNLNKTKYMVIHSKRRRISSHDPVIIRGYTL
FT                 EKASEYCFLGLTIDETMSWSAHIKSLKKTLSSLCGLLRRVSPFMPFSCMQK
FT                 IYFSLVHSRLQYLIANWGLASKSLLNELQVLQNRCLKIVYNKPFLFPTNLL
FT                 YSVVDKSILPIYALHELQIVVQIRKIITDPTLHHNTVLTVNRQDRASRQAG
FT                 NFILPRPSTDFGRKKFSFIGSKLFNQLPTTCKTSRSLAEFKRSVKQYLKSK
FT                 IQQR"
XX
SQ   Sequence 4867 BP; 1484 A; 1047 C; 967 G; 1369 T; 0 other;
     agtttttctg gcagcactgc cagcctaata tccctcttgt ttctaaggaa tataaaattg        60
     ttaatttcct cggaaataaa caacctaact ccgataattg tacgagaaag gcgagatgat       120
     ggcatagtaa cttggatgtg gtattatctg gatgatcgca gcgaggaaaa atgtataata       180
     tcatgttata tggtctgttc agcggtaaat tctaatcagt atttatgcag tcattgttct       240
     ggcattgtca ctgtatctaa tgtgtacatt gaaatatttc atgacgtaat ccgggtactt       300
     tcattctgct ggtgtttcac gatccgtttc ggtagtacac aaattatcaa gagtgctcgt       360
     gaatataagt gggttacgga gctcgtcgtc aacatgttcg aggattgcat aatttgtgtt       420
     acgtgccgca aggaggaaaa ggatgttaag aaggtgatcg aatgtgggta ctgccacaaa       480
     tgcgagcact atgattgtaa gaatgtcttc ggaagcgctg ttcggaaact acggagtcaa       540
     ccttatttct gctccctgca atgtagtgag ctgcatcaac aaacgaaatc gaccgttgaa       600
     gctgattccc agatgcaccg agacatacaa ttagtattaa aggaggtacg tgagacacgg       660
     gccgaaatgc atgcagtcaa aaacacggta ggagacatgg agaagttcca atcttttctt       720
     tcagagaaat tggacactct gcttggcgag attcaatcaa cgaaatctga tcacaaagct       780
     ctgaaaacag atgtcgaaaa tctcactttt caacagcaat ctgtgtgtga tcgtgttgat       840
     aggttggaac ttgatctgga ccgtataaat cgttctactg tgtcacaaaa cgccgtaatt       900
     attggaatac cagcagtcga caacgagaat cctaatgaaa ttgtgcgtaa agtagcagct       960
     gcggtggggt gtcaattgcc tgacgacgca attcttgatg tcaaacgctt gctgccgaag      1020
     aatgcaaatc gagatgccag gccttccagt gcaagacccg cccctatcaa agtatgcttc      1080
     aagacggtat gccataaaga ggaactcctt tcgaagaaaa aaaaatcacg gatcgctgcg      1140
     tctgtcggat gtcaaccctt caactgctga acctaatcga aaagtaataa tacgggacga      1200
     gctaactcca tacggactcc agctgctgaa cgaaacgaag gatgcacaag accaactagg      1260
     cttcaaattt gtctggcccg gacgtaatgg tgtagtttta gtcaagcact ccgagtcttc      1320
     gactgtcaag gtgattcgca gcatgaagga cttggaaacg ctgaagagat tgagcaataa      1380
     acgactttat gcctctaact cgtcgtcacc ggatgaacaa caaccgaacc cgaagcgacg      1440
     attgtagatc tgtctctgtt tccacgcttc aattagtatt ttaatttatc atgtattgta      1500
     atagagctta tgattgtgta gatgattgga ttgcaaataa aagtatactt gctcatctca      1560
     actgtaagat tctgcaaata aacgcacgag gtatcaatgt attatccaaa tttgattgta      1620
     ttaaagagct tcttgagaga agtcgagagc ggtttgatgt ggttgtaatc tgtgagacat      1680
     ggattaaacc tgatcgtact catttatacc aaattgaagg ctttgttgga atctactcgt      1740
     gcagaaatga gtctcatgga gggttggctg tatttactcg cgctgacctg catgtagaag      1800
     ttcttgcgaa tagaacaata gacggatttc atcacataca ttgtcagttt aaatcgttga      1860
     gcagtccagt tgatttacat gctgtttatc gacctcctgg atttgaggtt cgtcgattct      1920
     tctcggaatt ggagaacatt atctctgcag taagaaatgg gcagaaatgc atccttgtcg      1980
     gtgatacaaa cattcctacg aatatgacta gcaacaatat cgttggggaa tacatacgtc      2040
     ttcttgcttc gtacaatcta gtagtaacga acaccaatac tactagaccc gccagtaata      2100
     atgtacttga tcatgtcata tgtacagata cattagccga aaaagtagtg aatgatacta      2160
     tttgtactga tttgagtgat cattcttttg ttgtttcatc cattgatatg tcatgccaca      2220
     ccaccaaaaa aactctgtca aagcagatta cagaccataa tcgattgaat gatttgtttc      2280
     gccaatcaat gattaattta ccgcttacaa tgactgccaa tgaaactctg gaatatgtga      2340
     ttgaacgtta taaatcacat ctcaaagaat gtactagaac agtgacatgc caagctaaag      2400
     ttaaaaacaa ctgtccctgg atgactcttg aactctggag actaattaaa gtaaaagata      2460
     aacaattgaa aatatcccgt gcgaacccca ccgatgagag agcttctaca ttattgactc      2520
     acgtatctaa gatgttacaa tcgaaaaagg cacaatgcaa acgtgaatat tatctgcgta      2580
     ttataaacag gaatcagcag agaaatacgt ggaaattgat aaaagatgtc tcgggaagat      2640
     ctgcttcaaa aaattcggta aggaaaatcc gaaaaaatga tcaaaccatc actgacccgt      2700
     tacaaatgtg caccgctttc aacgaatatt tttgcaatat tggcaatcaa ttggcgtcta      2760
     ctattccgag caaccgaaat atccatcggt tcgatacgat acaaactgcc tcgtcttcta      2820
     tgtacctacg accttcaacg cctaatgaga ttattttgct gattaacggt ttggatatta      2880
     aaaaatctgc aggacacgat aaaatatcca ctacattcgt aaaggttcac catgactttt      2940
     tcgccgaact tctgcatcat gtattcaacg aaattatcca gactggacaa tatcctagct      3000
     gcctgaagca ggcacgagtc attccggttc ttaaatctgg tgatccgaca gaactgaaca      3060
     actatagacc gatatcaact ttgtctgtaa ttgacaaaat cttggaaaaa cttcttgtcg      3120
     caagacttgt tgagtacttg tcacgcttcg acctcatgta cagtcgccaa tacggtttca      3180
     gaagaggttc gagtacactt gctgctactt gcgaccttgt tgaagatctc tatgattctc      3240
     tggacaaccg gaagctcgct ggagctttat tcatcgatct caagaaagct tttgatactg      3300
     tagatcacaa tcttctgatt gaaaagctcg agtgtcacgg aatcagagga acgcccaagc      3360
     agttgttgga gagttatctt gcgggacgga ctcaatatgt ctatatggat gactgtgaga      3420
     gtcctccatt acccataaca attggagtac cacaaggtag taaccttggt cctgtacttt      3480
     ttctgctgta catcaacgac ttgtgtagac taaatctcca tggtaagctt cgtctttttg      3540
     ctgatgatac gtcattatca tacaacggga acgattgtgc cagcatactg aggtacatta      3600
     aagaggatat agagctacta atggagtact tcagtgaaaa tatgctttcg ttgaatctga      3660
     ataagactaa gtatatggtg attcactcta aacgtcggcg catttccagt catgatcctg      3720
     ttattatccg aggatacact ctcgaaaaag catccgagta ctgtttctta ggattaacca      3780
     tcgatgaaac aatgagttgg tcagcccaca tcaagtcact caaaaaaacg ttaagctcgc      3840
     tttgcggatt gcttcggaga gtttcaccat ttatgccatt ctcttgcatg cagaagatat      3900
     acttctcgtt agtacattcc cggctgcaat atcttatcgc caattggggg ctagccagca      3960
     agtcactctt aaatgagttg caagtattgc agaatcgatg cctgaaaata gtttacaaca      4020
     aaccgttcct gtttccaaca aatcttctgt attcagttgt cgataaatca attcttccga      4080
     tttacgctct gcatgaacta caaatagtag tccaaatcag gaaaatcatc acggatccta      4140
     ctctgcatca caacacagtc ttaaccgtca atcgacaaga tcgagcctcg cgtcaggcgg      4200
     gaaatttcat actcccgcgg cccagcactg actttggtcg gaaaaaattc tcttttattg      4260
     gaagtaaatt gttcaaccag cttccaacga cctgtaaaac ttctagatct cttgctgagt      4320
     tcaaaagatc tgtcaaacaa tacctcaaga gtaaaatcca gcaacgctag tctttactga      4380
     atcgctcttt gcttcttttt ttttcctcct ttcccgcatg ccaccgccac gaaatgctcc      4440
     gccgaccgcc atccaccaac cacccatcgc caactgccaa ccacccaccg cccaccaccc      4500
     aacgtcaacc gctcaccaca aaccgccaac caacaatcgt caccacttgc cgccctttgc      4560
     tttcctgcat tcaacgtcga tttctacatt gagttacgta tcgcctatca tcatcgtcat      4620
     tctaccaagc atttaaaaca cgtgaaccat attgtgatta atgtagagta attgtcagaa      4680
     aactactaaa acacttcctt caaagagctc attgctcact ggaatgtgtt ccaaatgagc      4740
     tgtatatact tgaattgttc tcaataaatg aaaagacgag gaggttttgt gcctgttgga      4800
     ggaagcagct ttaaaaaagt tcacctccaa tgggtttttc cctgctccac cttaaaaaaa      4860
     aaaaaaa                                                                4867
//
ID   Crack-35_AAe repbase;    DNA;    INV; 5781 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-35_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5781
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1251-1251 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           301..1416
FT                 /product="Crack-35_AAe_1p"
FT                 /translation="MLEEDEKIVCFVCGESEENPEKTIECVQCAKSVHFRC
FT                 KNLRGNAILKAKKRPFYCSVECADMFARSAREQNGYDQIIDEIKLLAQSVR
FT                 ESKQESTHLRLAFEQSAYKIDTLVKTTKAIEESQDFLSKQFDVLQKDFDGF
FT                 KKQLSGLEMENERMRAELGSWRTEQATVTSRLDQLEMEVDKVNRGMISRNA
FT                 VILGVPIVDDENPKALVIKLGSLVGYALNESNVVNARRLLDKNRLNRSAPI
FT                 LVSFCSATTKEKLFEMKRAYGPLELSKLSDSFRGSTHRVVIRDELTSFGRT
FT                 LYQQAKELQSSMGFKYVWPGRNGKILIKRQDGGKIEEIGCKKQIEDLKKTS
FT                 AKRSLNSSSNLSLTSLSPVQEPASKRIQM"
FT   CDS           1461..4358
FT                 /product="Crack-35_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMNNNMNNYFYYTIAELNKNVDSNFDNNKLKLLQINI
FT                 RGMNCMDKFDRVRDILSLYTGNIDIVVIGETWLKENCTNLYHIDGFRSFFS
FT                 CRPDSLGGGLAVYVKQTIKVSVPKIEHDNGMHHIHVIVHANALPFHVHAVY
FT                 RPPSYDFSRFLTTMDSIITAQGIDTSCVIVGDVNVPNNHQDNPLVREYSNL
FT                 LRCYNFEVTNTYTTRPASNNILDHVVCSEAVKNKVVNETILTDISDHYPIL
FT                 STFKLGRTVEKRTLEKIIVDKQKLNDAFENAVSGLAYESAEDRLYKVMDLY
FT                 KTLREKFSKKVVVQAKIKGHCPWMNFDLWKLLRIKENVLASCKRYPNESRP
FT                 KELLAHISKMVQRTKDNCKKTYYGNLFRCNNQKQSWKNLNEVLGKSRSGKM
FT                 EEIKLMVNNQEISGHSVADAFNQYFCTIGPKLASTINSQRDINKYDTLTPL
FT                 HASIFLRPTTEQEVVIEIKNLDANKSSGPDGIPVKFIKDHHHTFSALIRDV
FT                 FNQAINTGIFPDRLKVARVTPIYKSGSKNDINNYRPISVLPVLSKIFEKLL
FT                 VTRLLNFLHTHNIMYSHQYGFRTGSSTLTATSELVDEIYDAIDTQKLVGVL
FT                 YLDLKKAFDTIDHEMLLRKLEYYGLRGIANNLIRSYLTGRSQFTHVNGSSS
FT                 CKRALTVGVPQGSNLGPLLFLLYVNDLPKLNLHGKPRLFADDTSLSYEASD
FT                 PNNIVDQMEQDLVKLQDYFNENLLSLNLSKTKYMMLHSPRRNISPHRDLIV
FT                 QAIPIDKVQCFKHLGLMIDSKLTWSDHINSLQKTISSTCGMLWKLSKFLPR
FT                 NALLTMYHAFVQSKLQYLVSLWGAAAKSRLKPLQTIQNRCLKAVFNLPRLY
FT                 STANLYENSPASILPVSALRELQCLXQIHNQMYNQEMHHNQDIERASHRYS
FT                 LRNAAFLLISRTNTEMAKKSVSYFSKKCFNSLPEVVKLEQNTNKFKQVVKS
FT                 MIKARVHRYIL"
XX
SQ   Sequence 5781 BP; 1776 A; 1237 C; 1220 G; 1531 T; 17 other;
     agcagagatt ttgttacaag tagtcctgaa aggcagctgg ggttccaacg tgcatgcgag        60
     gtaatttcgt atcgtttatc aagaaaaatc attagaaaat tgataccgct ttcgacatct       120
     acgattgcta ctattgtcag aaagtggcgg tgtaatagac acaaagcgtt tgtcagtaat       180
     taggcccatg cgtattgcgt attgtgcgcg tagcgattga tctatagctg gtgctaccat       240
     cattatcgat tgttggtaaa cagtggtcga gtaataaata tcttcttcat tgctgaggaa       300
     atgttggaag aggatgaaaa aattgtttgc ttcgtctgtg gtgaatcaga agaaaatccg       360
     gaaaaaacca tcgagtgtgt ccaatgcgca aaatcagttc attttcgctg caaaaatcta       420
     cgggggaacg ccattctaaa agccaagaag cgaccttttt actgctccgt tgaatgtgct       480
     gacatgtttg cgcgtagtgc ccgagagcaa aacggttatg atcaaattat cgacgagatc       540
     aaattgctcg cacaatccgt ccgagaatcg aagcaagaat ccacgcacct acgactagcc       600
     ttcgaacaat ctgcctacaa aattgatact ttggtgaaga ccactaaagc aatcgaggag       660
     tcgcaagatt tcctttcaaa gcagttcgat gtgctacaga aggattttga tggcttcaag       720
     aagcagttga gtggattaga gatggaaaat gaaaggatgc gtgcagaact tggaagctgg       780
     agaaccgaac aagccacagt aacgtcaagg ctggaccagt tggaaatgga ggtagacaaa       840
     gtaaaccgcg gcatgatttc gcgcaacgcg gtcattttgg gtgttccgat tgtcgacgat       900
     gaaaatccta aggctttagt gataaaacta gggagcttag ttgggtatgc gctcaatgaa       960
     agcaatgttg tcaatgctcg tcgcctgctt gataagaacc gcctcaaccg aagtgcacct      1020
     attctagttt ccttttgctc tgcgacaacc aaggagaaac tgtttgagat gaaacgagcg      1080
     tatggaccgc ttgaattgtc gaagttgagt gattcatttc gtgggtcaac ccaccgagtg      1140
     gtaataagag acgaactaac atcatttgga agaacgctat accaacaagc aaaagaattg      1200
     cagtcgtcga tggggttcaa gtacgtgtgg cccggcagga acggaaagat tctcatcaaa      1260
     cgccaggacg gtgggaaaat tgaggaaatt ggttgcaaga agcagatcga agatttgaag      1320
     aaaacgtcag ctaaacggtc cctaaactct tcatccaatt tgagcttaac gtccctgtct      1380
     ccagtgcaag aaccagcatc aaagcgtata cagatgtaaa ctgtttagta agaaaattgt      1440
     atgtgtacta ttatatcgca atgatgaaca acaatatgaa taactatttc tattatacaa      1500
     ttgctgaatt aaataaaaat gtcgattcga attttgataa caataaattg aaacttttgc      1560
     aaataaatat aagaggaatg aattgtatgg ataaatttga tagggttagg gatattcttt      1620
     cattatacac tggaaatata gacatcgttg taattgggga aacgtggctg aaggaaaatt      1680
     gcacaaatct ctaccacatt gatggcttcc gcagtttctt ttcgtgtcgt ccggattcat      1740
     tgggtggtgg attagcagtg tatgttaaac aaacgatcaa agtaagtgtg ccgaaaattg      1800
     aacacgacaa cggcatgcac catattcacg tgatagttca cgcgaatgca ttaccgttcc      1860
     atgtacatgc agtttataga cctccatctt atgacttctc gcgttttttg acaacgatgg      1920
     attcaataat cactgcacaa ggaatcgaca cttcctgtgt tatcgtaggt gatgtaaacg      1980
     ttccaaataa tcatcaagac aacccattgg tccgcgagta cagtaatctt ctaagatgtt      2040
     acaattttga agtgaccaac acatacacga ccagaccggc aagtaataat atcttggatc      2100
     atgttgtctg ctccgaagca gttaagaata aagtggttaa cgaaaccatt ctcactgaca      2160
     taagcgatca ctatccgatt ctttcgacct tcaaactggg tagaacagtt gagaagcgaa      2220
     ctttggaaaa aataatagtt gacaaacaaa aactgaatga tgccttcgaa aatgcagtta      2280
     gcggcctggc ttacgaatca gctgaagatc gtctgtataa agtaatggat ttatataaaa      2340
     ctttaagaga aaagttctcg aagaaagtgg tcgtacaagc taagatcaag ggccattgcc      2400
     cttggatgaa cttcgatctt tggaaactcc tgcgtatcaa ggaaaacgtt ttagctagct      2460
     gtaagcgcta tccgaatgaa agtagaccaa aagaactcct tgcacacatt tccaaaatgg      2520
     twcagcgaac taaagataat tgtaaaaaaa cctactatgg taatctgttc cgttgcaaca      2580
     atcagaagca aagttggaaa aacttgaatg aagttttggg aaaatctcgt tctggtaaaa      2640
     tggaagaaat aaagctgatg gtgaataatc aagaaatcag tggacactca gtggcggatg      2700
     cattcaatca gtacttttgc acaattggac ccaagcttgc ctcaacaata aatagccaac      2760
     gagacataaa caaatacgat acgctaacgc ctcttcatgc ttcaattttc ctgcggccta      2820
     caaccgagca agaagttgtg atcgaaataa aaaacctaga tgccaataaa agcagtggac      2880
     cagatggaat acctgtaaaa ttcatcaaag atcatcatca tactttctca gccctgattc      2940
     gagatgtttt caatcaagcc attaacacgg gaatcttccc agataggctg aaggtagcac      3000
     gtgtgacgcc gatctataaa tcaggaagca aaaatgatat taacaactac aggccaatat      3060
     cagttttacc tgttttgagc aaaatatttg aaaaactact agtaactagg ctgctcaact      3120
     ttcttcatac gcacaatatc atgtatagtc atcaatacgg atttaggaca ggttccagta      3180
     cccttacagc cactagcgaa ttggttgacg agatttacga tgctatagat actcaaaaac      3240
     tcgtaggagt gctttacctc gacttgaaaa aggcgtttga cactatcgat catgaaatgt      3300
     tgcttcgaaa actggaatac tatggattaa gaggaattgc aaataatttg attcggagct      3360
     atcttacggg aagaagtcag ttcactcacg taaatggatc aagcagctgt aaaagggcat      3420
     tgacggttgg cgttccacaa ggtagcaacc tcggaccttt attgtttctc ctatatgtga      3480
     acgatttacc aaaacttaac ttgcatggaa agcctcggtt atttgcggac gacacctcgt      3540
     tgtcatacga agcatcggac ccaaataata tagtggatca aatggagcaa gatctcgtaa      3600
     agctccaaga ttactttaac gaaaatttgc tgtctttgaa cttgtctaag accaaatata      3660
     tgatgctaca ttcacctcgt cgcaatatct caccacacag agatttgata gttcaagcta      3720
     tccctataga taaagttcaa tgttttaagc atcttggttt gatgattgac tcaaagctca      3780
     catggagtga tcacataaat tcactccaga aaaccatcag ttcaacgtgt ggcatgctat      3840
     ggaaactttc caagttttta ccaaggaacg cattgttgac gatgtatcac gcattcgttc      3900
     aatcaaaact gcaatatctt gtttcgcttt ggggagctgc agctaagtcc cggttgaaac      3960
     cactacaaac cattcaaaat cgttgtctga aagctgtgtt taacttacca cggctatact      4020
     ccacggcaaa tttgtacgaa aacagtcctg cttcaatatt gcctgtgtct gctttgcgag      4080
     aactgcagtg tttgsttcaa attcacaatc aaatgtacaa ccaggaaatg caccataacc      4140
     aggatataga acgagcttca catagatact cactacgaaa tgcagcattc ctactaatat      4200
     cgcgtaccaa cacagagatg gctaagaaat cggtttcata cttcagtaaa aaatgtttta      4260
     attctttacc agaagtggtg aagcttgaac aaaacacgaa taaattcaag caagttgtga      4320
     aatccatgat aaaagctaga gtacaccggt acatattatg attcgtaatg tacactttgc      4380
     ctggataaac acgaaatcga caattcctgc tcccccgctg ctacctcatt ggtgtaccgt      4440
     gaacaaacat cgttcgtggc atcttcattc gctatcggcc gggaagaaat ttcagttctt      4500
     ccaggtaaga gctggtatat gtctggccga agtcagtgat gctgcgcgcc tagtaatgtt      4560
     gaaaaaccgt tccagttctt gcttctctgc tgtttctcta caacatcttc aatgccgcac      4620
     cgtgagcaac cgttcgtggc atctcatccg ctatcggccg ggaggaaacc ccagttctat      4680
     caggcaagag ctggtatatg tctggccgaa gtcagtgatg ctgcgcgcct agtaaagttg      4740
     awamwccagt tctatcagtt cttgcttatc cgctgcttcc ctacaaccgc ttcaatgccg      4800
     caccgtgagc aaccgwtcgt ggmatctcat ccgctatcgg ccgagaggaa gccccagttc      4860
     tgccaggtaa gagctggtat atgtctggcc gaagtcagtg atgctgcgcg cctagtaawg      4920
     ttgawaaacc gttccagttc ttgcttctct gctgtttctc tacaacatct tcaatgccgc      4980
     accgtgagca accgttcatg gcatctcatc mgctatcggc caggaggaaa ccccagttct      5040
     atcagccgca ccgtgagcaa ccgttcgtgg catctcatcc gctatcggcc gagaggagac      5100
     tccagttcta tcagtttttg cttatccgct gcttccctac aactgcttca atgccgcgct      5160
     gtgagcaacc gttcgtggca tctcatccgc tatcggccga gaggaagccc cagttctatc      5220
     aggtaagggc tggtatatgt ckggccgaag tcagtgatgc tgcgcgccta gtaaagttga      5280
     taaaccgttc cagttcktgc ttctctataa tcgcttcaat gccgcaccgt gagcaaccgt      5340
     tcgtgtcatc tcatccgcta tcggcctgga ggaaacccca gttctatcag ttcttgtttc      5400
     tctgctgctt ctctacaacc tcttcaatkc cgcaccgtga gcaaccgwtc gtggaatctc      5460
     atccgctatc ggccgagagg aagccccagt tctgccagtc actgccacca accactactg      5520
     ccctccatca gcccaccatc gtaacacatc gccatacgtt aaattcctaa ttaagataag      5580
     aagcttktaa cataagttga aatactacac ttccttaaaa gagcaactat gctcactgga      5640
     atgtgtattg caatgtataa aacataataa tgaaaagatg aggaggtttt atgcctgttg      5700
     gaggaagatt cttgaaagaa gatcacctcc aatgggcttt tccctgctcc ataagagaag      5760
     aaataaawaa awaaaaaaaa a                                                5781
//
ID   Crack-36_AAe repbase;    DNA;    INV; 4006 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-36_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4006
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1252-1252 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. It is positioned at the deepest branch of
CC   Crack/Daphne
CC   in the RTclass1 phylogeny.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..1018
FT                 /product="Crack-36_AAe_1p"
FT                 /translation="MPSTTRNQSKKRVDISPTEGDKSKESTSSENPAKRHW
FT                 KNHNVTMSKDMTLMDLHKLLKSEIQSSKEEIQSSIMDMKGEIRKLSSEVDE
FT                 VRQSQSFINAEFEHFKSGLSKITDEMKKTTSDVALLKSGHAELSSQLATME
FT                 HDLNFVQQGQLSNNLLISNVIKTADEDLCAILCKICEVLEVELFEREVLVI
FT                 TRLATRNTKQIEPILVQFANRFVKDRIISAAKNTTLSCQNIGFTIDQRIYF
FT                 NHHLTPHNQALLQMARAYKRKHGYRFAWFSKGHIYIKRDENSTAVRITSSA
FT                 DLPSEIDE"
FT   CDS           1072..3882
FT                 /product="Crack-36_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEHLSDHLTSMDIEHRLNSVSVSSSTLNLLHLNTRSC
FT                 RGKMSDLVQLIDQLRHVHVVVFSETWLYQNEICNMINYDVYHSCRPTRGGG
FT                 VSMFILSSFKHRKIYELVDDMNNFLIIELMEYNLKVFGVYTPGRNVDYFLQ
FT                 KFEETLSNFKRMVVMGDMNINLLDDSNPIVNNYICSLNANGFVVLNKMNSA
FT                 HATRTSNTISTIIDHVITDILDRKMVLVINDTEAHVSDHKTLVFSIQHNVQ
FT                 SKRRIYEKHVIHYENILHENFRAELDEVQNYDEFESLCNHKINTNRSIYTV
FT                 VDDRKPLQPYIDRNLYAEIRKKNKLFKLSKANPNNDALKRNYLLLRNSIRN
FT                 KTKLAKTRYYNAKFENCVGDPKKMWATINEVVFNRPSSKQDNQINLVENGK
FT                 KILCPNENAQIFNEYFLSIGSQNTSNTNANLEQNDNPELFDFLQVTGRDVE
FT                 QTITKLNRTAAVGKDGISVKFLNRTKSFITPKLTDLINDVIATGSFPDKLK
FT                 MSKVIPLFKSGDCTLKTCFRPISILPATSKVFESVLENQMRSYLLNNNIIN
FT                 RNQYGFQKKSNTVAASADMMNYIYRAKDRGLKVICVFLDLSKAFDCISHTR
FT                 LLGKVQKYGFSEHAVKLLRSYLDNRLQYTFVNNCYSAPGIVKSGIPQGSIL
FT                 GPLLFIIYVNDMWNLPLRGRLQLYADDACLVYEASTTEELEFDIQHDMNLL
FT                 LRWLSENGLKLNVEKSSYIALNNNLSVDIQVDSILLKKTDTSSFLGLILDT
FT                 NLSWKAHIEKVIKKVTPYVFAMRKARKFISMDTCWKLYNSFILPHFTYMSC
FT                 LWGCAASIYLKPLEIIQNKVVKIIRNLPIRFPSVELYSESTLSIRSLCKYN
FT                 MMIHIYKVRNNLIKTNVVLFNVSDVHSHNTRQQNSIFVNCPRTQYGWKNLF
FT                 YQGIIMYNSLPNEMKSLNLRLFKRSLKQYLCNM"
XX
SQ   Sequence 4006 BP; 1405 A; 700 C; 758 G; 1142 T; 1 other;
     cagtttcagt tgagctgtcg atgagtgcac acgtcttttt cggtcgctgc tgtgtgttgg        60
     gctctgtttg tccgtattgt ctttttgagc aatcgcgtgt gttttctcat cttgttctat       120
     gccgagcact acaagaaatc agtcgaaaaa acgagtggat attagcccaa ctgaaggtga       180
     taagagcaag gaatcaacgt catccgagaa tccagcgaag cgtcattgga agaaccataa       240
     cgtcaccatg agtaaggaca tgactcttat ggacctacac aagttgctca aaagtgaaat       300
     acaatcttcc aaggaagaga ttcagagcag cataatggat atgaaagggg aaatcaggaa       360
     acttagttca gaagttgatg aagttaggca atcccaaagc ttcattaacg cggagtttga       420
     acatttcaag agcggtctga gtaaaatcac ggatgaaatg aaaaagacca cctctgatgt       480
     cgcgcttctg aaaagcgggc atgcggagct ctcatcacag ctggctacaa tggaacatga       540
     cctcaatttt gttcagcaag gtcaactatc aaacaacctg ctgatttcca acgtaataaa       600
     aaccgccgac gaagatctct gtgcaatctt atgcaaaatc tgtgaggttc tcgaggttga       660
     attgttcgag cgcgaagttc tggtcatcac ccgattagca acgaggaaca caaagcaaat       720
     tgaaccgatt ctggtgcagt ttgccaacag atttgtaaag gataggatca tttcagcagc       780
     aaaaaatacc acactatcat gccaaaatat cgggttcaca atcgaccaac gcatctactt       840
     caaccatcac ttgacaccac acaaccaagc attgctccag atggcgagag cctacaaaag       900
     gaagcacggc tataggttcg cgtggttcag taagggtcac atctacatca agcgggacga       960
     aaactctacg gctgttcgta ttacttcaag tgctgatcta ccttcggaaa ttgatgagtg      1020
     atgccacctc cgtagctcca cctctacaaa cataccaata tcgatttcgc gatggagcac      1080
     ctgagtgacc atttgacgag tatggacatc gaacatcgtt taaattcggt atcggtctct      1140
     tcatctacat taaaccttct tcatctcaac acgaggagct gccgaggcaa aatgagtgac      1200
     ttggttcaac tgatcgatca gttgcgccac gtgcatgtag tagtgtttag tgaaacgtgg      1260
     ctttatcaga acgaaatttg taatatgatt aactacgatg tgtatcactc atgtagacca      1320
     actagaggcg gtggagtttc aatgttcatt ctttcgtcat tcaaacatcg caagatatac      1380
     gaactagtag atgatatgaa caattttctg ataattgaat tgatggaata taatttgaaa      1440
     gtttttggtg tatatactcc ggggaggaat gtagattatt tccttcaaaa gtttgaagag      1500
     actcttagta atttcaaaag aatggtcgta atgggagata tgaacattaa tctgttagat      1560
     gatagtaacc ctattgtgaa taattacata tgtagcctaa atgcaaacgg ttttgttgta      1620
     ttgaacaaaa tgaatagtgc acatgccact agaacatcga ataccatatc aacgatcatt      1680
     gatcatgtaa ttacggatat tctggatcga aaaatggttc tggtaatcaa tgacaccgaa      1740
     gcccatgttt ccgatcacaa aacgttggta ttttcaatac aacataatgt acaatctaaa      1800
     agaaggatat atgagaaaca tgtaattcat tatgaaaaca tattacatga aaattttagg      1860
     gctgaattag atgaagttca aaattacgat gaatttgaaa gcctctgcaa tcataagata      1920
     aacacgaaca gatccatata cacagtagtt gatgacagaa aaccactgca accttacatt      1980
     gatagaaatt tatacgcwga aataagaaag aaaaacaaat tattcaaact ttcgaaagcg      2040
     aatccaaata atgatgcatt gaagagaaac tatctgttac ttagaaattc cattagaaat      2100
     aaaacaaaat tagcaaaaac aaggtactat aacgcaaaat ttgaaaattg tgttggtgat      2160
     cctaaaaaga tgtgggccac gataaatgaa gtagttttca atagaccaag tagtaagcaa      2220
     gataatcaga tcaatttagt agaaaatgga aagaaaatat tgtgtccaaa cgaaaatgca      2280
     caaatattca atgaatattt tcttagtata ggctctcaaa atacgtcaaa tacgaatgcg      2340
     aatctcgagc agaatgataa tccggaatta ttcgattttt tacaagtaac aggaagagat      2400
     gttgaacaaa cgataacaaa attaaaccgc actgcggcag taggtaaaga tggaatatct      2460
     gttaagtttc tgaatcgtac aaaaagtttt ataacaccta aattaactga tttgatcaat      2520
     gatgtaattg caacaggtag ttttccagat aagctgaaga tgtcgaaagt gatcccattg      2580
     ttcaaatctg gtgattgtac cttaaaaaca tgttttcgcc caatatcaat acttccagcc      2640
     acatctaagg tttttgaatc agttctagaa aaccaaatga ggtcgtatct gcttaataat      2700
     aatattataa atagaaatca gtatggattc caaaaaaagt caaatacagt ggcggcgtcc      2760
     gctgatatga tgaattacat atatcgcgcc aaagacagag gtttaaaagt tatttgtgta      2820
     tttttagatt taagcaaagc gtttgattgt atctcacaca caagactatt aggcaaagtt      2880
     caaaagtatg gattttcaga acacgctgtc aagcttctta gatcgtattt ggataaccga      2940
     ctgcaataca ctttcgtcaa taattgttat agcgccccag gaattgtaaa gtcaggtatt      3000
     ccacaagggt caatactagg accccttttg tttataatat atgtgaacga tatgtggaat      3060
     ttacccttaa gaggacgctt acagctatat gcagacgacg cctgccttgt atacgaagct      3120
     agtacaacgg aagaattgga atttgatatt caacatgata tgaatctgtt gttgaggtgg      3180
     ttatcagaaa acggtttaaa gctaaacgtt gaaaagtcct cctacatagc actgaataac      3240
     aacttatcag ttgatataca agtagactcc attttgctta aaaagactga tacatctagt      3300
     tttcttggcc taatattaga tactaatttg tcgtggaagg ctcatattga aaaagtaatc      3360
     aaaaaagtta ccccttatgt ttttgccatg agaaaagcta ggaaattcat ctcgatggat      3420
     acatgttgga agctgtataa ttcatttatc ttgcctcact ttacatacat gagttgcttg      3480
     tggggatgtg cagctagtat atatttgaaa cccctagaaa taattcagaa caaagtagtt      3540
     aaaattataa gaaatctacc tatacgcttt ccttcagtcg agctttacag cgaatctact      3600
     ttgtctatac gatcactctg caaatataac atgatgattc atatttataa ggtccgtaac      3660
     aatttgataa aaacaaatgt cgtactgttt aatgtatcag atgtacactc acataataca      3720
     agacagcaaa attcgatctt tgtaaactgt cctaggaccc aatatggctg gaaaaatctt      3780
     ttttatcagg gaattataat gtataactcg ctgccaaatg aaatgaaatc tcttaatctt      3840
     aggttgttta agcgtagttt aaaacaatat ttgtgtaaca tgtaatttat agttagaaca      3900
     gccaactgaa taagtagaat cgctattaga gtagctgata acagtttgtt ataaactttt      3960
     agctacaaat tatattaata aataaaaaaa aaaaaaaaaa aaaaaa                     4006
//
ID   Crack-37_AAe repbase;    DNA;    INV; 3367 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-37_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3367
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1253-1253 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity. It is positioned at the deepest branch of
CC   Crack/Daphne
CC   in the RTclass1 phylogeny.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..2946
FT                 /product="Crack-37_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYTNKAFDCVNSWLRNKDSINKITSLRIIQLNIRGMN
FT                 DVSKFDCIGELLERYRKRVDIVVLGETWLKRDITMLYSPNGYVGIFSCRDD
FT                 SHGGLVMYIRNDLHFNLCTNRCIDGFHHIHVTLQNKGKPLHLHAMYRPPSF
FT                 DFRRFLSEIEHTITAKGSREACVLLGDMNVPLNLTSNNAVCEYIRLLESYG
FT                 MFATNTITTREASGNILDHVVCPGRIASDVTNETITTDLSDHCFIVSHMNV
FT                 LNSATKHAFTKKIINRDRLNELFNEQCVRVPLTGSANDKLVHVIRTYTSIL
FT                 EQCTKTVNLEAKIKDHCPWMTFDLLKLIRIKDNALSKHRRHPENVAAKELL
FT                 ERVSKLLQQKKAQCKKDYYYKQLERVDTKTAWRFINQNLGKHKKDSRISKI
FT                 ELDGQVLNDTNSICGAFNKYFCEIGPSLASNIVSDSNIYKFGTLVPQQNSL
FT                 YLYPTSTNEVLILINKLDIKKSSGSDNIPASFVKTHHRFFARLVTDVFNEI
FT                 IHTGQYPECLKLARVVPIFKSGSNKELTNYRPVSCLSVLDKLIEKLLTSRI
FT                 IEFTQRFNLIYAHQYGFRSGSSSLTACCDLVDNVYDSLDRKKIAAALFIDL
FT                 KKAFDTIDHRMMVEKLDVLGFRGVTKSLLESYLTDRYQFVAIGNNKSLPGA
FT                 VRTGVPQGSNLGPILFLLFINDVSKLRLNGKLRLFADDTSLVYEANNVDEL
FT                 LNQIKEDVILLKNYYDTNLLSLNLNKTKYIVFHSPRKRVPPRTALDIQGCI
FT                 IEEVTEYSFLGLKLDSTMKWSGHINDLKSKLSSICGVMRKLSNFVPRNWLI
FT                 KLYHALFNSRLQYLVACWGSANKSTLKELQVIQNRCLKIIYGRPWLYPTIM
FT                 LYKESSDSMLPIKAMYEYQTLVQVWKILTESSTHHNTELRRVPRIRESRQH
FT                 GSLVLGRPHTEFGRKKFFYTGSKLYNDLPPVCKQSRSLNCLKANLRKHLKE
FT                 NLSKYIL"
XX
SQ   Sequence 3367 BP; 1084 A; 697 C; 671 G; 914 T; 1 other;
     tcaggaacca gcaagcacgt tgaatacacg ttacatcgac gttctggata atagattaca        60
     atgtatacga ataaggcttt tgattgtgta aattcatggt tgagaaataa agattcgatt       120
     aataaaatta cttctcttcg aataattcaa ttgaacatca ggggcatgaa cgatgtatca       180
     aaatttgatt gtataggaga gctgttggaa agatacagga aaagggtgga tattgttgtc       240
     ttgggagaaa cgtggttgaa gagagatata acaatgttat attcgccgaa tggctacgtt       300
     ggtatcttct catgcaggga cgattcgcat ggaggactag tgatgtacat tcgaaatgat       360
     ttacatttca atctttgcac gaatagatgt attgatggtt ttcatcacat ccatgttacg       420
     ttgcaaaaca agggcaaacc attacacttg catgccatgt acagacctcc aagcttcgac       480
     tttaggcggt ttttgtcgga aatcgaacac acgattactg ctaaaggaag tagagaagcc       540
     tgcgtccttc ttggagatat gaatgtcccg ttgaatctta cttcaaacaa cgctgtgtgt       600
     gagtatatta ggctcttgga atcctacggt atgttcgcaa cgaacacgat cacaacaaga       660
     gaagcaagtg gtaatatttt agatcatgtt gtttgcccag gtcgaatcgc gagtgatgtc       720
     acgaatgaga caattacgac tgacttaagt gaccattgtt tcattgtgtc ccacatgaac       780
     gtactcaatt ctgcgacaaa gcacgctttc acgaaaaaga taataaatcg cgaccgattg       840
     aatgagctgt ttaatgagca atgcgtacga gttcctctca ccggcagcgc aaacgacaaa       900
     ttagtgcatg tgattaggac atacacgtca atactggaac aatgcactaa gacagtgaat       960
     ctggaggcaa aaataaaaga tcactgccca tggatgacct tcgaccttct gaaactgatt      1020
     cgcattaagg ataacgcact aagtaagcat cgccgtcatc ctgaaaatgt agcagcaaaa      1080
     gaactattgg aacgtgtatc gaagttactt caacaaaaaa aagcgcagtg caaaaaggat      1140
     tattattaca agcaactaga aagagttgac accaagaccg cgtggagatt tataaatcaa      1200
     aatctgggaa agcataaaaa agatagcaga atttcaaaaa tcgaacttga cggtcaagta      1260
     ctaaacgata caaacagcat ttgcggtgca ttcaataaat acttttgtga aattggccct      1320
     tctcttgcgt caaacatagt cagcgattcc aacatataca agtttggcac tctcgtacca      1380
     caacaaaatt ctctttatct ttatccaacc tccaccaatg aagtccttat tcttataaat      1440
     aaactggata tcaagaaatc atctggatct gataatatac cggcaagttt cgttaaaacc      1500
     catcataggt tcttcgcacg attagtaaca gatgtattca atgaaataat tcacaccggc      1560
     cagtaccctg aatgcctcaa gctcgctcgt gttgttccaa tcttcaaatc cggtagcaac      1620
     aaagaactca ccaattatcg ccctgtgtcc tgtttatccg tgctggacaa gcttattgag      1680
     aaattgttga cttcgaggat aatcgagttt acacagcgct ttaacttgat atatgcacac      1740
     cagtacgggt ttcgtagtgg atcaagctcg ctaacggcat gctgcgacct tgtcgataat      1800
     gtttatgact cactggaccg caaaaagatt gctgctgcgc ttttcatcga cctcaaaaag      1860
     gctttcgata ctatagatca tagaatgatg gttgaaaagt tagatgttct gggattcaga      1920
     ggagttacta agtcgttact ggagagctac ctaacggatc gctatcaatt tgtagctatt      1980
     ggaaataaca agagtcttcc tggtgcagta aggacaggtg ttccacaagg tagtaatttg      2040
     gggccgatat tatttttgtt gttcattaac gacgtgtcta agctacggct gaatgggaag      2100
     ctgcgactct ttgcggatga tacgtcgttg gtctatgaag caaacaacgt tgatgaactt      2160
     ctaaaccaaa taaaagaaga tgttatactg ctgaagaatt attatgatac aaatttgttg      2220
     tcgcttaacc ttaataagac gaagtacata gtgtttcact cacctcgaaa acgggtccct      2280
     cctcgaactg ctttggatat tcaggggtgc atcatcgaag aggttacgga atactcgttt      2340
     cttggcctta aattggattc aacgatgaaa tggagtggac acatcaacga tctcaaaagc      2400
     aaattgagtt caatctgcgg agtcatgaga aaacttagca acttcgttcc gagaaattgg      2460
     ctaatcaaat tataccatgc gctattcaat agtcgacttc agtatcttgt cgcatgttgg      2520
     ggatcagcaa ataaatcaac gttgaaggaa cttcaggtta tccagaatag gtgccttaaa      2580
     atcatatacg gtagaccctg gttgtaccca acaatcatgc tctataagga atcatctgat      2640
     tcaatgcttc cgattaaagc tatgtacgag tatcaaacac ttgttcaagt ttggaaaatt      2700
     ctaaccgaga gctcaacaca tcacaacaca gaactaagaa gagtcccacg tattcgagaa      2760
     tctaggcagc acggtagtct tgttctagga cgtccgcaca cagaattcgg ccgtaaaaag      2820
     ttcttttaca ccggaagtaa actgtacaat gatcttcccc cagtatgtaa acagtctcga      2880
     agcctcaact gcttgaaagc caatctgagg aaacatttga aagaaaactt gtcaaaatac      2940
     atcttataag gagtcacctg ccactatgtt ccaaaaaatt gtcactatca aatcgtttac      3000
     ttgccatgtg tctgctcttt tcttctccac cagccgcctc ccgccaccac cgccaacagc      3060
     ccaccaccca tcacccaccg cccaccgcca accgcccacc gcctcaactc atcacaaatc      3120
     gcctatcatc aacctgtatc aacgattgtt gttagatttt agaaagaaat tgttgtaaaa      3180
     tgatwttaat atgcacttcc ttcaaagaga aaataacatt ctcactggaa gtgtccatgt      3240
     gttgtatatt aagatcgaaa agaagaggag gttttatgcc tctgggagaa ggatctcgca      3300
     aagaatttcc actcccaggg gcttttccct gctccaaata aagaaaaaaa atgtctaaaa      3360
     aaaaaaa                                                                3367
//
ID   Crack-3_AAe repbase;    DNA;    INV; 3747 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3747
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1219-1219 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
CC   Closely related to Crack elements in Culex pipiens (Crack-1_CP
CC   to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           19..702
FT                 /product="Crack-3_AAe_1p"
FT                 /translation="MSVEIKQSVSKLESEMECIKTSQQYISDEFDGMKDII
FT                 SQHKXEICSLQKDVTSIKSDCVTTHQHVEELNYELNVLRQANFEGHMLISN
FT                 VIKVAQEDLGELLRNMFSLLNINYDPEGILSVGRLSSSNQNGIQPILVRFA
FT                 SILTKDKLMRAARERPICCDEIGLGVKQRIFFNHRLTPANQRLLAAARKFK
FT                 REHSFKFVWFTNGEIFLRKDEDCRAIKISDVRDLCGLI"
FT   CDS           690..3611
FT                 /product="Crack-3_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MWINLNSISLRSFLNEFIIIVVDHCPNIINEIKIDYN
FT                 NDISELSSTSLNILHLNTRSCRNKIDELTQMMYELNKTIHVIVFSETWLYE
FT                 NEICNIADYTSYHSCREDRGGGVSIFVLGSLRSQLTINLTYDVNNFLIVDL
FT                 IDIGIKVMGVYNPGRNVFEFLDKFEQIIINHEKLYICGDFNINLLDVSNDL
FT                 VQNYRCRIESLGFFILNSSDSKYATRISNTISTTIDHFITNQFQFKMQLIT
FT                 KDTESHLSDHKTLILSIEIRVEKPEQQRTAHVIKYERFLNETLHHNIEECN
FT                 SFEHLTQNLSQIISENKEETVYKKTFEIRKPYINTALLRDIKHKNRLYKSY
FT                 KNAPDNSAIKNELYRKYITERNRLRNKTKAAKENYYKQQIENHKCNAKKTW
FT                 DLLRQVIFERKTIEQSSQKLSLMQNGVLLNNDKLIANCFNTFFINVGQVTS
FT                 PPQTLGDFHSFMTQEIETEFGFHHIEEDTINNIIINLNSSAASGLDKISTK
FT                 FLQKCKNYLIPKIVELVNHMIDSSVFDNVLKQAKVVPLFKSGDKLNTINYR
FT                 PISILPALSKISEKVLYQQLSSYLFQNNLIHSNQFGFIPKSSTESATLELV
FT                 NFVIRGLDDGKFVACIFIDLQKAFDCIPHDILIEKLAYYGLTNQAVALVSS
FT                 YISNRQQICCVNDTQSDSMSIRTGVPQGSILGPILFNIFINDLLKLPLKGM
FT                 LQCYADDAASKYKANSLALLKEMMQYDLDLMNQWFSSNRMSVNTSKSNFMI
FT                 FTLSNDVPSLNLMIDNKPLKQVYETNYLGLIIDFKLRWQSHIQKVKSKIVP
FT                 YIFAIRKARRCLGLQSCWLLYNSYILPRLSYLICLWGSAASSQLNVLKVLQ
FT                 NRVIKIIKRLPVLSPSIALYSPRILSLINLHKYSIVFVIYKIKNGIIKHNI
FT                 ELMPATEVHSHFTRNRERFFTSTPRTELAVRNIFYTGVINFNSLPQRLKNE
FT                 TNIVNFKRNLRIHVFENGL"
XX
SQ   Sequence 3747 BP; 1347 A; 604 C; 618 G; 1177 T; 1 other;
     aacgcccgta tcgacgaaat gtcggtcgaa ataaagcagt ctgtatcgaa gctagaatca        60
     gaaatggaat gcatcaaaac atcacagcag tacatatcag atgagttcga tggtatgaag       120
     gatattattt cccagcataa acakgaaatt tgctctctcc aaaaggatgt aacttcgatc       180
     aaatctgatt gtgtaactac tcatcaacac gttgaggagt taaattatga gttgaacgtt       240
     ttgaggcaag cgaattttga aggacatatg cttatttcga atgtaatcaa agtagcgcaa       300
     gaagatcttg gtgaactttt gaggaatatg ttttccttgt tgaacataaa ttatgatcct       360
     gaaggcattc taagtgtagg acgattatct tcatcgaatc aaaatggaat tcaaccgata       420
     ttggtccgtt ttgctagcat tttgacgaag gacaagttga tgagggcagc acgagagcgt       480
     ccaatctgct gtgatgaaat cggcttggga gtgaagcagc gcattttctt caatcatcgc       540
     ctaacacctg ctaatcaacg tcttctggct gctgctcgaa aattcaaaag ggaacatagt       600
     ttcaagttcg tttggtttac aaatggtgag atattcttgc gaaaagatga agattgtaga       660
     gcaatcaaaa tttcagatgt tcgagattta tgtggattaa tttaaactca atttccttga       720
     gatctttcct taatgaattt attattatcg tagtggatca ttgtccaaat attatcaacg       780
     aaataaaaat tgattacaat aatgatattt ctgaattatc tagcacttct ttgaatattc       840
     ttcatctaaa cactcgcagc tgtagaaata aaattgatga attgactcaa atgatgtatg       900
     aactaaataa aactattcat gttatagtgt tctctgaaac atggttgtat gaaaacgaaa       960
     tttgtaatat tgccgattat acttcatatc atagttgcag agaagatcgt ggaggtggtg      1020
     tctccatatt tgtcttgggt agtttgagaa gtcaactgac tataaatctc acctatgatg      1080
     taaacaattt cttgattgta gacctaatag atattggtat aaaagtaatg ggtgtttata      1140
     atccgggaag aaatgtcttt gaatttcttg ataaatttga gcagataatt attaatcatg      1200
     aaaaactata catatgtggt gattttaata taaatttgtt agacgtgtca aatgaccttg      1260
     tgcaaaacta ccgatgccga attgaaagct taggtttctt tatactaaat agctcagatt      1320
     caaaatatgc aacccgtata tctaatacta tttcaacaac catcgatcat ttcattacaa      1380
     atcagttcca gttcaaaatg caactaatca caaaagatac tgaaagccat ctttcggatc      1440
     acaaaactct tattttgtca attgaaattc gtgttgaaaa acctgaacag caaagaacgg      1500
     cgcatgttat taagtatgaa agatttctta atgaaacgct acatcataat atcgaggagt      1560
     gtaatagttt tgaacatctt actcaaaatc tttctcaaat tatcagcgaa aacaaagaag      1620
     aaacagtata caaaaaaact tttgaaatac ggaagccgta cataaacaca gcgttactga      1680
     gagatataaa acataaaaac agattgtaca aaagttataa aaatgctcca gacaattctg      1740
     cgataaaaaa tgaactatat aggaaataca taactgagcg aaatagacta agaaataaaa      1800
     caaaagcagc gaaagaaaac tattacaagc aacaaattga aaatcacaaa tgtaacgcta      1860
     agaaaacatg ggatctacta aggcaagtaa tatttgaacg gaaaactatt gagcaatcct      1920
     ctcaaaagtt gtctcttatg caaaatggtg tcttgttgaa taacgataag ttgattgcca      1980
     attgtttcaa tacctttttt ataaatgttg ggcaagtcac ttcaccacca caaacattag      2040
     gcgattttca ttcatttatg acacaagaaa tcgaaactga atttggtttt caccatattg      2100
     aagaagacac aataaacaac atcattatca atcttaattc cagtgccgca agtggtctag      2160
     acaaaatatc aacaaaattt ttgcaaaaat gtaagaacta tttaattcca aaaatagttg      2220
     aactggtcaa tcatatgatt gattcttctg tatttgacaa tgttttgaaa caagccaaag      2280
     tagttccttt gttcaaatct ggtgacaaat taaatacaat caattatcgc cccatttcta      2340
     tcttacccgc tttatccaaa atttctgaaa aagttctcta tcaacaacta agtagctact      2400
     tgtttcaaaa taatcttata catagtaatc agtttggatt tatacccaaa tcaagtacag      2460
     aatctgcgac gttagaattg gtgaactttg taatcagagg cttagatgat ggaaagtttg      2520
     tggcatgtat atttattgat ttgcagaaag cattcgattg cattcctcat gatattttga      2580
     ttgaaaagct tgcatattat ggcctaacta accaagctgt tgcgcttgta agctcataca      2640
     tttctaatcg ccaacagata tgctgtgtga atgatacaca aagtgattcc atgtcaatcc      2700
     gtactggtgt accacaagga tctatattag gaccaatttt gttcaacatt ttcataaatg      2760
     atttgttaaa actgcctctt aaaggaatgc tgcaatgcta tgctgatgac gcagccagta      2820
     agtacaaagc aaatagttta gccttattaa aagaaatgat gcaatacgac cttgatttga      2880
     tgaatcagtg gttttccagt aacaggatgt ctgtcaacac aagtaaatcc aatttcatga      2940
     tattcacgtt atccaacgat gttcctagtt taaacctaat gatagataac aaacctttaa      3000
     agcaagttta cgaaacaaac tacctaggtt taattataga ctttaagctg agatggcaat      3060
     cacacataca aaaagtgaaa agcaaaattg tgccctacat ttttgctatt agaaaagcgc      3120
     gtagatgtct tggtttacaa agttgctggc ttttatataa ttcatacatt ttacctcgcc      3180
     tctcttattt aatttgcctt tggggttcag ctgctagtag tcaattaaat gttttaaaag      3240
     tgcttcaaaa tagagttatt aaaattatta aacgcttgcc tgttctttcc ccttcaattg      3300
     cattatactc accaagaatt ttatctctaa ttaatcttca caaatacagc attgtatttg      3360
     ttatatacaa aatcaaaaat ggaattatca aacacaacat tgaattaatg ccggctacag      3420
     aagttcactc acattttact agaaacagag aaagattttt tactagtaca cctcgtactg      3480
     aattggcagt aagaaacatt ttttataccg gagtcattaa ttttaattca ctacctcaaa      3540
     gactaaaaaa tgagacaaat atagtaaatt tcaaaagaaa cctaaggata catgtttttg      3600
     aaaatggatt gtagttttaa gtgtattagc gtattttaag ttaatttagt gatacttgaa      3660
     cataattgaa ttcgctagat aagtagctgt acacagtttg tattaacttt tcagctatgt      3720
     atgcaataaa gaaaaaaaaa aaaaaaa                                          3747
//
ID   Crack-3_CP  repbase;    DNA;    INV; 4776 BP.
XX
AC   .
XX
DT   22-JUL-2009 (Rel. 14.07, Created)
DT   22-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Culex pipiens Crack non-LTR retrotransposon.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-3_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-4776
RA   Kapitonov V.V. and Jurka J.;
RT   "A family of Crack retrotransposons from Culex pipiens.";
RL   Repbase Reports 9(7), 1334-1334 (2009).
XX
DR   [1] (Consensus)
XX
CC   The Crack-3_CP consensus sequence was derived from multiple
CC   alignment of 4 copies of Crack-3_CP that are 99% identical to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..1425
FT                 /product="Crack-3_CP_1p"
FT                 /note="ORF1."
FT                 /translation="MSAEPSICAVCKVAEPEATKIVTCVNCYKSEHTECKG
FT                 VYGSSAAALRAKPYFCSVQCCEIHHRCQNSTLFSGIDDKVMSEILIEVRKT
FT                 NTEMHDIQQTMGELKRFNTYVGNQIEVLVTEIKSVKRDYVKVKQDVGYLQS
FT                 DQKQTNETISDLQLSLDRVNRAALIKNAVILGVPTTQTEDTKQLVRQIAAA
FT                 VKCQLPQDAIVEATRLVSKDPSQRTSKSVPIRVVFAEEQHKEDLFAKKKNH
FT                 GLLFTSALGAGSGPATNRIIIRDEMTSFGMKLLKDVRSLQEQADIQYVWPG
FT                 RDGVILTKKSSDSKVEKVRSLLDVRKLQQSKRSRDESLLHSTDLSMSILAE
FT                 PDPKR"
FT   CDS           1486..4383
FT                 /product="Crack-3_CP_2p"
FT                 /note="ORF2."
FT                 /translation="MSMYCNIEFECMQQWIVNKFCTDVVSLKILQLNIRGM
FT                 NDLAKFDGVREMLQQYGERIDVLVLGETFLKADRTCIYNLDGYIATFSCRN
FT                 ESSGGLAVFVRNDIDMDVLENRTADGFHHIHCQLRSLNKRIDCHAVYRPPS
FT                 FGATRFLDEMDQILSKTKNGHDCIIVGDMNIPVNKPSINIVQQYSHLLSSY
FT                 GMVVTNTFVTRPASGNILDHVICDEKLSHSVTNETIPSDLSDHCVVLSTFR
FT                 RAEPILKRTLEKQIIDHRRLNQLFFDRITTLPQTLTADQKLSHVINCYNTL
FT                 LPQCTRTVKAQVNIKGHCPWMTLHLWKLIQIKDNTLKRKRRNPNDAHLSEL
FT                 LAHVSKKLQKEKAECKRNYYSNQLSSGDQKASWKVINEAMGKNSSRAYPTE
FT                 LLINGNKTTDSNQIAQHFNDFFSNVGPNLAATINSDREVHKFGTLSALPEG
FT                 NSLFLRPASINETIALINALNPKKSPGPDGIPASFLKANFVFFAHLLTDVF
FT                 NEIVETGVYPAVLKVARVTPVHKSGDKKEANNYRPISCLSILDKVIEKLIV
FT                 SRLVDFITQHKLLYAHQYGFRQGLSTLSASCNLVDDIYDSLDKRELVGALF
FT                 IDLKKAFDTIDHRLLLEKLETYGIRGVAKAVIESYLSDRLQFVSLGQVRST
FT                 LSPVITGVPQGSNLGPILFLLFINDIGKLKLKGTTRLFADDTSVFYHGKDC
FT                 ALIQRQITQDLELLDDYFQTNLLSMNLSKTKYMLIRSPRKQLPARQPIVFN
FT                 GQQIEEVNQYPFLGLTLDDTMSWLAHIDLLKKKLAPICGILWKLSSFLPTS
FT                 CLKKLYFSLVHSRLNYLVTTWGLAYAVHLHDLQVIQNRCIKAVFRKPYLYP
FT                 TSLLYSNPADSLLPLRALQKLQMLTHVRKCHLSTTTASTFPIREQTSENDR
FT                 ATRQLGDFILPLPRTEFGMKRVAYVGCKLHNELPTVCKNASQGAFKLSLRN
FT                 HIKSKIIDYLV"
XX
SQ   Sequence 4776 BP; 1353 A; 1221 C; 1047 G; 1155 T; 0 other;
     aaagctgcca ccctgcaagt gacgagcaca tcactctcta cagtgtcctg aaactaacag        60
     tttttaagga ggaaaaactg attcgtggta tttgcagtta cgtgaaaagt gaagatcacg       120
     aggcggagga caggtgaacg tgttatcttg gatgccggtg tatggacagt gcaagaatct       180
     tgagggaaaa agttcctaat ttcctggtaa atatactcca ttgggaagcg tagtaagacg       240
     ttacacttac tcataagttg tcaataagat gatagcttaa gttccagaat tttcgctgat       300
     gcagtactag ttcgccggtt attactgtct gtcacttatc gctgccccca cttgtttgta       360
     aaaaaaaaac attcggtgga aatgtctgcc gaaccgagta tttgcgcggt gtgtaaagtt       420
     gccgagcccg aggcaaccaa aattgtcacc tgtgtcaact gctacaaaag tgaacacaca       480
     gaatgcaaag gagtgtacgg gtcatcagct gctgcgctac gagcgaagcc ctacttctgc       540
     tcagtgcaat gttgtgaaat tcatcatcgc tgccagaatt caacgctgtt cagcgggatc       600
     gacgacaaag tcatgagcga aattctcatc gaggtacgca aaacaaacac cgagatgcat       660
     gatatccaac aaaccatggg ggagctgaaa cggttcaaca cctacgttgg gaaccaaatc       720
     gaggtacttg tcacggagat caagtctgta aagcgggact acgtgaaggt gaaacaggac       780
     gttgggtacc tccagagtga ccagaagcaa accaacgaaa caatcagcga cctgcagtta       840
     agccttgatc gagtcaacag agctgcgctc atcaaaaacg ctgtcattct gggcgtacca       900
     acaacccaaa ctgaggacac caaacaactc gtgcgccaaa ttgcagctgc cgtcaaatgc       960
     caactaccgc aggatgctat cgttgaagct actcggttgg tatcgaaaga tccttcccag      1020
     cgaaccagta aatccgtgcc gattcgagtc gtcttcgcag aagaacaaca caaggaggat      1080
     ctcttcgcaa agaagaagaa ccacggtttg ctgtttacat ctgctctagg tgctggttcg      1140
     ggccctgcga cgaacagaat catcattcgc gacgagatga ccagcttcgg tatgaagtta      1200
     ctgaaggacg tcagatctct ccaggaacaa gccgacatac agtatgtctg gccaggtcga      1260
     gacggggtaa ttctcaccaa aaaatcgtca gactcgaagg tcgagaaggt ccgcagcctc      1320
     ctggatgtcc gcaaactgca gcagtctaaa cggtcgcgtg atgagtcgct cttacactca      1380
     actgatctct cgatgtcgat cttggccgag ccggacccga aacgctgatg gtagtgatct      1440
     ggttgatcta gctgctaagc gattttactg taaactactt aaattatgtc tatgtattgt      1500
     aatattgagt ttgaatgtat gcaacagtgg attgtaaata aattttgtac tgatgttgtt      1560
     tctctgaaaa ttcttcaact aaatatacgg ggcatgaacg atctggccaa gtttgatggt      1620
     gtacgggaga tgctgcagca gtatggagaa cgtatcgatg tgttggtgct tggtgaaacc      1680
     ttcttgaagg cagatcgaac ttgtatttac aatttggatg gatacatcgc aactttttcc      1740
     tgtcgtaatg aatcgagcgg aggtttggct gtgttcgtgc ggaacgatat tgatatggat      1800
     gtactcgaga accgaacagc tgacggattt catcacatac actgccagct acgttcctta      1860
     aacaaacgta tagactgcca tgctgtgtac aggccaccgt catttggtgc tactcggttc      1920
     cttgacgaga tggatcaaat cttgtcgaaa actaaaaatg gtcacgattg tatcatagtc      1980
     ggtgacatga acattcccgt taacaaaccc tcgatcaata ttgtgcagca gtattctcac      2040
     ctgttatcat cgtacggcat ggtggttacg aacacttttg taacgagacc cgcgagtggt      2100
     aatattctgg accatgtgat atgtgatgag aaactatcgc actcggttac caatgaaaca      2160
     attccctctg acttgagtga ccattgtgtg gtcctttcta cattcagaag ggctgaaccg      2220
     atcctgaaaa gaactctgga gaagcagatc attgatcacc gtcgtctcaa ccaactgttc      2280
     ttcgatcgca ttacaacgtt gccgcaaacc ttaacagctg atcagaagct ttctcacgta      2340
     attaactgct acaataccct actgccccaa tgtacgagaa ctgtcaaagc ccaggtcaat      2400
     atcaaagggc actgtccatg gatgacgctc cacttatgga agcttatcca aataaaagat      2460
     aacacgttga agcggaagag gcgtaatccg aatgatgccc acctgtccga actgctggcg      2520
     catgtctcca agaaacttca gaaggagaag gctgaatgca agcggaacta ctacagtaat      2580
     cagctttcct ccggtgatca aaaggcgtcg tggaaggtca tcaacgaagc tatggggaag      2640
     aacagctctc gcgcttaccc aaccgaactg ctgatcaacg gcaacaagac aacggattcg      2700
     aaccagatag ctcaacactt caacgatttc ttcagcaacg tgggacccaa ccttgcagca      2760
     actatcaaca gcgatcgtga agtccacaaa ttcggaaccc tgtctgcttt acctgaggga      2820
     aactccctgt tcctgagacc agcatcaatc aacgagacaa tcgccctcat caatgcattg      2880
     aatccaaaaa aatcccccgg cccagatgga attcccgctt ccttcttgaa agcaaacttc      2940
     gttttcttcg cgcacctgct gactgacgta ttcaacgaaa tagttgaaac tggagtctac      3000
     cctgctgtct tgaaagtggc ccgtgttaca cctgtgcata agtcgggtga caaaaaggaa      3060
     gcaaacaact atcgtccgat atcctgtctc tccatcctgg acaaagtcat tgaaaaattg      3120
     attgtttcgc gacttgtaga cttcatcact cagcacaaac tcctttacgc ccaccaatac      3180
     ggtttcaggc agggtctgag cacactatcc gcctcgtgta acctagtaga tgacatctac      3240
     gactcgctgg acaaaagaga actcgttgga gcattgttca tcgacttaaa gaaggcgttt      3300
     gatacgatcg accatagact cttactggaa aaactggaaa cctacggcat acgaggtgta      3360
     gccaaggcag ttattgagag ttatttgtct gaccgactcc agtttgtatc gctcggacaa      3420
     gtacgcagta cgctcagccc tgttataact ggcgtcccgc aaggaagcaa ccttggaccg      3480
     attctgtttt tgctcttcat taacgacatc gggaagctga aactcaaggg gacaacacgc      3540
     ctgtttgccg acgacacctc ggtcttttac cacggaaaag actgtgctct gattcaacgc      3600
     cagattaccc aggacttgga actccttgac gactatttcc aaacaaacct gctctccatg      3660
     aacctgtcca agacaaagta catgttgatt cgatcacccc ggaagcagct cccagctcgc      3720
     cagcctatag tcttcaacgg tcaacagatt gaagaagtta accagtaccc gttccttggt      3780
     cttacccttg atgacacgat gagctggtta gcacacatcg acctgttgaa aaagaaacta      3840
     gctccaatct gcggaatact ttggaagctg tcatcgttcc tgcctactag ttgcctcaaa      3900
     aagttatact tctcccttgt ccactcccgc ttaaactacc ttgtcacgac ctggggactt      3960
     gcttatgctg tacacctcca tgacctgcaa gtgatacaga acaggtgtat caaagccgtc      4020
     tttcgcaagc cgtacctgta cccaactagc ctcttgtatt ccaacccggc cgactcactc      4080
     cttcctcttc gagccctcca aaaactccaa atgctgaccc acgtccgaaa atgtcacctg      4140
     agcactacca ccgcttcaac gtttccaata agagagcaaa cctcagaaaa tgatcgagct      4200
     acaagacaac taggtgattt catcttgccc ctaccgagaa ccgagttcgg tatgaaaagg      4260
     gtcgcttatg ttgggtgcaa gctgcacaac gagttgccga cggtttgtaa aaatgcgagt      4320
     cagggtgctt tcaagctgtc gttacggaac cacatcaagt caaaaataat tgactacctt      4380
     gtctaaacac ccgccactaa agagttttct tctctgcttt ccggtcgcca ccgcccgccg      4440
     tccaccaccg tcgtccaccg cccaccaccc gccgcccgcc gcccgccgcc caccacccgc      4500
     cgcccaccgc ccccccgccg ccaactgcta cccgccacca accgcccact accagcaact      4560
     gcggcttaca acccgcaccc agtgcttata tgatttagaa tttagctttt tttaatttat      4620
     gtaatagttt gcacagcctt taaagagaaa ctgttctcac tggcatacgt gcatagcagt      4680
     ccgagcctaa cctttaaaaa ataaaataaa aggtaggtga aatattccca gcttctgctg      4740
     ggaagtgcgt aattcggtat taaaaaaaaa aaaaaa                                4776
//
ID   Crack-3_CQ  repbase;    DNA;    INV; 4675 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4675
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 34-34 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1569..4472
FT                 /product="Crack-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TTISATHYATNAYVGNPLNLSLPASSNVIKILQINIR
FT                 GINRFEKLDSLCLFIRNLNTVVDVIVVGETWLKEARSQYYNIPDYQAIHSC
FT                 RRTSAGGLAIFIRKELPFAVTANTTNQGYHHIAVKLHAGKNQVLIHGFYRP
FT                 PDFDAVHLASSIEAILANADTADPCLLVGDMNLPVNNPEARDVQQYTQLLN
FT                 SYGMAVTNSFVTRPSSTNILDHVVCSVANSSRVSNYTMDCDLSDHSYVLTV
FT                 LKLKMEQERRTLTKTWTNYTAVNDEYRSFLQEYQLDLLVPNERLQAITERY
FT                 ALLTKKHTRTTTVEVKVKHNCCPWFNYDIWKLSNIKDKVLQKWKANRLDEV
FT                 QTELLARANLKLNEAKRKAKANYHSRLFCTSNPKLLWSRINEVLGGKSKAN
FT                 SKVQLEVNHEIVEDPSSVSNIFNDYFASVGVNLGSQLTSDGNIHKFGTMKY
FT                 ATRSLFLRPVTSLEVQNIIFALDPKKAQGYDGFPVAALKRHSTLLASVIKD
FT                 CFNECVSQGEFPACLKRALVHPVFKGGDPTNPSNYRPISVLPVLNKVFEKL
FT                 LFARIYNFLIATEQLYRHQFGFRKGSSTEVAILELVDEVSKTLDDKLSAGS
FT                 IFLDLSKAFDTINHQMLLKKLESCGLRGLPNALLQSYLSDRIQQVVVSGIR
FT                 SEIQFVRCGVPQGSVLGPLLFLIYVNDMSKLQLHGKTRLFADDTAISYACP
FT                 SPVVVVQQMKEDMELVFNYLENNLLALNLSKTKMMIFRFLHSQLPEYPSLS
FT                 VRNTVIEEVACFKYLGVYLDNRFNWDNHVRQVIAKCSSLCGILRRLSRSVP
FT                 HHVLLKIYLAYIHSRYRYAIAVWGSCPKVYLKELQVQQNRCIKAVYKLPFL
FT                 HPTRELYSMPQHKILPMYGLYTQSVAVIMYRILNNVNIHHNWEFEAAIHDH
FT                 YTRGSTDLRRTGFRTELGRRRFKIRGPTLYNELPENMKEALTVNEFKRKLT
FT                 IYTRENLNNFIVR"
FT   CDS           join(226..882,689..1531)
FT                 /product="Crack-3_CQ_1p"
FT                 /translation="QNRAAHPSKSVTSASVKPLHCIIGRHTVDLVAEFHSY
FT                 SQLLASPPNKICCNQHKCCCNATTESLNQHTNYKHCQTKSPIVHVTSDESR
FT                 IKIIVLLVVFIRAESPPHTSHPPSRHRLQNLDAKYFAVCLLLRCCLLQEIL
FT                 LERNRRISVVSCAAIVLVLALHTATPPCTKFQTTAPSVSEHCQHEFKFGRV
FT                 ARTHCIYEEGFIKLPEGCCSEPTISFEQIYWYLHCTLPHHPAQNFKQQRHL
FT                 LASTANMSLNLAELPELIASMRKDSSNCLKDVVASQQFLSNKFEEIVGHMK
FT                 LLQNQIQLLRSENHCLKQSIKNLSENAKSITQVVHQAELDIDCQQRSELST
FT                 NAIILGIPRTAQENTDDIVLKTCEALGYSTAKHDMVSCCRIPCAKSENSPI
FT                 RITFKSAHCKEKLMEHKKQYGTMDISAIQNQKLPMGTQGRVVIRDELTPLS
FT                 RRLLQELKGLQAALDLRYVWPGRNGAIMVRKTEKSKAIPILSRHDIQKLLQ
FT                 TPKK"
XX
SQ   Sequence 4675 BP; 1442 A; 1164 C; 953 G; 1116 T; 0 other;
     ctggtaacac tgctcgacta gtgaacttgt tgtgattgaa ccctccagat aattcagcaa        60
     aaattaaccc gaaaaccacc aataaatcgc cagagacatc gctgtacccg ttgatcacgc       120
     ctcgctgtac gtattgatgc tgaaaatcag tgatagtgca tgcagtaaac cgagttaaga       180
     gcgttggaaa tttcgaacta atctcagtac actgcaccac cataacaaaa ccgggccgcc       240
     cacccgtcga aaagtgtgac atccgcttct gtcaaaccac ttcattgcat tattggtcgt       300
     catactgttg atttagttgc cgaattccac tcttactcgc aattgttggc ctcgccaccc       360
     aacaagatct gctgcaatca gcataaatgc tgctgtaatg ccaccaccga gtctctgaac       420
     cagcacacaa attataagca ctgccaaaca aaatcgccaa ttgtacatgt aacatctgat       480
     gagtccagaa taaagatcat cgttctgctg gttgttttca ttcgtgccga aagcccgccc       540
     cacacgtcgc atccaccgtc tcgccatcgt cttcaaaacc tggacgccaa atacttcgcc       600
     gtttgtttac ttcttcgctg ctgtctacta caagagattc tactcgaacg gaataggcgt       660
     atcagtgtgg taagttgtgc tgcaatagta ttggtacttg cactgcacac tgccacacca       720
     ccctgcacaa aatttcaaac aacagcgcca tctgttagcg agcactgcca acatgagttt       780
     aaatttggca gagttgccag aactcattgc atctatgagg aaggattcat caaactgcct       840
     gaaggatgtt gtagcgagcc aacaatttct ttcgaacaaa tttgaagaaa tagtgggtca       900
     tatgaagctg ctacaaaacc aaattcagct attgcggtcg gaaaatcact gtttgaagca       960
     gtcaatcaaa aatctctcgg aaaatgccaa atcgatcacg caagtcgtcc atcaagcgga      1020
     attagacatc gattgccaac aaaggtctga actgtctacc aacgcgatta ttctgggcat      1080
     acccagaact gcccaggaaa acacagacga cattgtgctg aagacctgcg aagctcttgg      1140
     atactctacg gcaaagcacg acatggtttc ctgctgcaga ataccctgtg cgaaatcaga      1200
     aaattcaccg attcgcatca cattcaaaag cgcgcactgc aaggaaaaat tgatggagca      1260
     caaaaaacaa tacggtacca tggatatcag tgcaattcaa aatcaaaagc tgccaatggg      1320
     gacgcaaggt agagtagtca tccgagatga gctgacacca ctatcccgga gactattgca      1380
     agagttgaaa ggattacaag ccgccctgga tcttcgttac gtatggcctg gacgtaatgg      1440
     tgctatcatg gtgagaaaaa ctgaaaaatc gaaggccata ccaattctgt cccgtcacga      1500
     catacagaag ctgttgcaaa ccccgaaaaa gtaatctgtg cagcttacca tgcagtatct      1560
     acaactaaac caccattagt gcaacccatt acgcaaccaa cgcctacgta ggaaatcctt      1620
     tgaatctgtc ccttcctgcc tcgtcgaatg tgatcaaaat tctgcagatc aatattcgag      1680
     gaattaatcg atttgaaaag cttgactccc tgtgcctatt catacgcaat ctaaacacag      1740
     tcgtcgacgt aatcgtggtt ggtgagacgt ggcttaaaga agctcggtcg cagtactaca      1800
     acataccaga ctaccaagct atccactcct gccgtagaac gtcggccggc ggtctggcaa      1860
     tcttcatcag gaaggagcta ccctttgcag taacagctaa cacaacgaac caaggctacc      1920
     accacatcgc agtcaaactc cacgcgggaa aaaatcaagt tctcattcat gggttttacc      1980
     gtccaccgga ctttgatgct gttcaccttg cctcatccat tgaagcgatc ctggcgaatg      2040
     cagatacagc ggacccgtgt ctcttagtgg gtgacatgaa tctaccggtc aacaaccctg      2100
     aagctagaga cgttcaacag tacacacagc tgctaaattc gtatggcatg gcggtgacta      2160
     actcttttgt tacaagaccc agcagcacca acatcctcga ccacgtggtt tgcagtgtgg      2220
     cgaactcatc ccgagtttcc aactatacga tggattgtga cctgagtgat cacagctatg      2280
     tccttacagt gcttaaactc aagatggagc aggaacggcg cacactaact aagacttgga      2340
     ctaactatac agctgtgaat gatgaatacc gatcatttct gcaagagtac caactagact      2400
     tactggtacc aaacgaacgt ctgcaagcca taacagaacg ctatgctctt ctaacaaaga      2460
     aacacacgcg aacgacgacg gtggaggtca aggtgaagca taactgttgt ccctggttca      2520
     actacgacat ttggaagctg agcaacataa aggacaaagt gttgcagaaa tggaaggcca      2580
     atcgactgga tgaggttcaa accgaactct tggctcgtgc aaatctaaag ctgaatgaag      2640
     caaagcgtaa agcaaaggcg aactaccact cgaggctgtt ctgtacaagc aacccaaagc      2700
     tactctggag tcgaatcaac gaggttctag gaggtaagtc gaaggcaaac tccaaagtgc      2760
     agttagaagt aaaccatgaa atcgtggaag acccaagcag tgtctctaac atcttcaacg      2820
     actactttgc ctcagtgggt gttaatctcg gcagccagct gacttctgac ggcaacatac      2880
     acaagtttgg cacgatgaag tatgctacgc gatccctgtt tcttcgacca gttacatcac      2940
     ttgaggtcca gaacataatt ttcgcactag accccaaaaa ggcgcagggt tatgatggtt      3000
     tcccggttgc tgccctaaaa agacatagta ctcttctagc aagtgtcatc aaggactgct      3060
     tcaacgagtg tgtcagtcag ggggagtttc cggcgtgctt aaagagagct ttggtccacc      3120
     ccgtcttcaa aggaggcgac ccgactaacc cgtcaaacta caggcctatc tcagtgcttc      3180
     ctgtcttgaa caaggtcttc gagaagctgc tttttgccag aatctacaac ttcctaatcg      3240
     ccactgaaca gctatatcgc catcaatttg gcttccgtaa gggttcatcg acggaagtag      3300
     ccatacttga gcttgttgac gaagtttcca aaacactcga tgataaactg tctgctggct      3360
     cgatcttctt ggacctctcc aaagcattcg acacgataaa ccaccaaatg ttgctgaaaa      3420
     agttagagtc gtgtggatta cgcggattac cgaacgccct tctacaaagc tacctgtccg      3480
     accgcataca gcaagtcgtc gtgtctggaa tccgcagtga gatccagttt gttcgttgtg      3540
     gagttcccca aggaagcgtt ctcggaccgc tactgtttct gatctacgtc aacgatatgt      3600
     ctaaactgca gctccacggt aagacccgac tctttgccga cgacaccgcc atttcgtacg      3660
     catgcccatc accggttgta gtagtacaac aaatgaagga agacatggag ttagtgttca      3720
     actacctgga aaacaatctt ctggctttga acctcagcaa aactaaaatg atgattttta      3780
     gatttctgca ttcacaattg ccagaatatc cctcacttag tgtacgcaac acagtcatcg      3840
     aagaagtagc atgttttaag tacttgggcg tctacctcga caaccgattc aactgggaca      3900
     atcatgtgcg gcaagttatt gcaaagtgct catcactgtg cggaatcctc aggagactgt      3960
     ctagaagcgt cccacaccat gtgctcctga aaatctactt agcatacatt cacagccgtt      4020
     accgatacgc cattgcagtt tggggctcgt gtcccaaagt ctacttaaaa gaacttcaag      4080
     tgcaacaaaa ccgctgtatt aaggctgtct acaagctacc ctttctacat ccaacacgtg      4140
     aactctattc aatgccacag cacaaaatcc tgccaatgta tggcctctac acacagtcag      4200
     tcgcagtaat tatgtaccgg atcttaaaca acgtcaacat tcatcacaat tgggagtttg      4260
     aagctgctat ccacgaccac tacacccgag gatcaactga tttaaggagg acaggatttc      4320
     gtactgaact aggaagaaga agattcaaaa tccgaggacc aaccctatac aacgaactcc      4380
     cggaaaacat gaaagaagca ctcacagtca atgaattcaa aagaaaatta acaatttata      4440
     cacgtgaaaa tttaaacaac tttattgtac gttagatcta agcgatgaat tgaattaaaa      4500
     taataaagtg ttaccagcta cacaccacaa cacacaacac aacacgacac aagaaaacac      4560
     aacacccata acataacata aaaacccttt aaaagaacta atgttcacta ggggaattat      4620
     ggaatgcatt atgaattgaa atgaaataaa gattattatt attattatta ttaaa           4675
//
ID   Crack-4_AAe repbase;    DNA;    INV; 3925 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3925
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1220-1220 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >94%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           56..874
FT                 /product="Crack-4_AAe_1p"
FT                 /translation="MNSSEKREAIPSENDXVRNSLNDLRQLIRNDILEASD
FT                 RTNSRIDDMSFQIKQSVSKLEAEMETIKNSQQFISDEFETMKASIIHQKEN
FT                 IVALKKEVSQIRTDCDTTHQHVEELNYELNALKQISLEGHMLVSNVIKVAD
FT                 ENLEELLARMCTLLDIVCSSESVLSVSRLSSSNQQGIQPILVRFTCVSMKE
FT                 KLMKAARERPIFCDEIGLGVKQRIYFNHRLTPANQRLLGAARRFKKQFNYK
FT                 FAWFTNGEIFLRKDESSRAIKITDIRDLNGLN"
FT   CDS           920..3775
FT                 /product="Crack-4_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDYCPNLLNELNIEYKLDVIDVSDMNLNILCLNTRSC
FT                 RNKMDELTQMVLDLKKKTIQVIVFTETWLHDGEFCNIMDYTAYHSCRKDRR
FT                 GGVSIFVLNSLKSQMILELNYDVNNFLIIELLDLKIKVMGVYNPGRNVHLF
FT                 LDKFEELISSVDDLIVCGDFNLNLLDSSNELVENYRYRVESLGFIILNSLN
FT                 PLHATRLSNTISTTIDHFITNYLDKRMHLITKDTECHLSDHKTLILSIEVQ
FT                 VSKPEIQEIKYCVKYERFLNNSFAQIVNECDSFSTLTQKLSSIVEKHKEPL
FT                 VIKKSYKIRKPYINNELLLEIERKNHLYKSFKEATPNSPLKSELHSKYTRL
FT                 RNRIRNKTKMAKENYYKTKIESHKGDGRKTWELLKELVFQQSKSGPSHNIA
FT                 LQESGVMLNDAKEISDCFNNYFINVGEMCAPQRTSYAFHSFMPQAVEYTFN
FT                 FVRVEEDSIIKVVESLNSSAASGLDRISVKFIQKCRGYLIGKITELVNEAI
FT                 HTCVFDDTLKIAKIIPVYKTGSKYDKTNYRPISVLPTLSKIVEKVLTQQLS
FT                 NYIFQNNLVHTNQFGFVPKSSTESATLELINFVVKGLDDGQFVACIFIDLK
FT                 KAFDCIPHEILLEKLKYYGLSVSAIQLMTSYFSNRQQICCVNGILSDAKVI
FT                 CTGVPQGSVMGPLLFNLFINDLLQLPLKGLLQCYADDAVSKYRANNLNLLQ
FT                 EMMQHDLELMHQWFSANKMSMNTEKTNFILFTTSFYTPSLTLSINNEPLRQ
FT                 VQETNYLGLIIDNRLKWNNHINKVKKKILPYIFAMKKVRKCLGVQSCWQIY
FT                 SSYILSQLTYLVCIWGSAASTHLNVLKVLQNRAIKSIRRLPTLFPTIALYT
FT                 YKYLSLSDLYRFSLIFTIYKIKNGIIKSNIEIIPATNIHSHATRNRDRFYT
FT                 NRPRTELASRHIFYAGIVNYNLLPNNIRNETIALNFKRKLKTYIVENM"
XX
SQ   Sequence 3925 BP; 1428 A; 643 C; 677 G; 1173 T; 4 other;
     tgactctccc gacgaacttg aaaaaacaaa tactcaacgt cacaaacaac caagaatgaa        60
     ctctagtgag aaacgtgaag ctataccaag tgagaacgat saagtgagaa attctttgaa       120
     cgatctacga cagctgatac gtaacgatat cctcgaagca agtgatagaa caaactcaag       180
     gatcgatgat atgtcgttcc aaattaagca gtcggtatcg aaacttgaag ctgaaatgga       240
     aactatcaaa aattcgcagc agtttatctc tgatgaattt gagacaatga aagcttcaat       300
     tatccatcag aaagaaaata tagtagcgtt aaagaaggag gtatcacaaa tcagaacaga       360
     ctgtgataca actcatcagc atgttgaaga acttaattat gaattaaatg ctctgaaaca       420
     aatcagcttg gaaggtcaca tgctggtttc caacgtgatc aaggtggcgg atgaaaatct       480
     ggaagaacta ttagctagaa tgtgtacact gttggatatc gtatgcagct ctgaaagcgt       540
     cttgagtgtg agtcgcctgt cttcatcaaa tcaacaagga attcagccaa tcttagttcg       600
     ctttacttgc gtgtcgatga aggaaaagct tatgaaagcc gcacgggaac gcccgatctt       660
     ctgtgacgaa attggcttag gggttaagca acgcatctat ttcaatcatc gcctcacgcc       720
     tgcaaaccaa cgacttttag gagcagcgcg taggtttaaa aagcagttta attacaaatt       780
     tgcttggttc acaaatggtg aaatattttt gagaaaggat gagtcctcaa gagcaataaa       840
     aattactgat atccgcgatc taaatggatt gaattagtaa tattatacct aacagaatta       900
     tatttgtatt gttaatatta tggattactg tcctaattta ctaaatgaat taaatattga       960
     atataagctt gatgtaatcg atgtatctga tatgaatttg aatatactat gtttaaatac      1020
     acgcagctgc agaaataaaa tggatgagtt aacacaaatg gtactagatt tgaaaaaaaa      1080
     aactattcaa gttattgttt tcaccgaaac ctggctacat gatggcgaat tttgtaacat      1140
     tatggactat acagcttacc attcgtgtag aaaagatcga agaggaggag tttctatctt      1200
     tgttttgaat agtttgaaga gtcaaatgat tttagaactc aattatgatg taaataattt      1260
     cctgatcatt gagttattag acttgaaaat aaaagtaatg ggcgtctata atccaggaag      1320
     gaatgttcat ttgttccttg ataaatttga agagcttatc tcgagcgttg atgacttaat      1380
     tgtctgcggt gactttaatc ttaacctttt ggatagctct aatgagctag ttgaaaacta      1440
     tcgttataga gtggaaagtt taggatttat aatactgaat agcttgaatc cgttgcatgc      1500
     tacccgtcta tcgaatacca tttccactac catcgatcat tttatcacga attatcttga      1560
     taagagaatg catttgataa caaaagacac tgaatgtcac ctatcagacc ataaaactct      1620
     aattttatct atcgaggttc aagtttccaa acctgaaata caggaaataa aatactgtgt      1680
     gaagtatgag agattcctca ataactcatt tgctcaaatt gtaaatgaat gtgacagttt      1740
     cagtaccctt acgcaaaaac tttcaagcat tgttgaaaaa cataaagaac ccttggtgat      1800
     taaaaaatca tacaaaattc gaaaaccata cattaacaat gagttactac ttgagattga      1860
     acgtaaaaat catttatata aaagctttaa agaggcaacg ccaaactcac cgttaaaaag      1920
     tgaattgcac agtaaataca caagattgcg aaatcgaata agaaacaaaa ctaaaatggc      1980
     aaaagaaaat tactacaaaa ctaaaatcga aagccataaa ggtgatggaa gaaaaacttg      2040
     ggaattatta aaggagttag tttttcaaca aagcaaatca ggcccatctc ataatatagc      2100
     tctacaggaa agtggagtaa tgctgaatga tgctaaggaa atatctgatt gtttcaataa      2160
     ttattttata aacgttggcg aaatgtgtgc acctcagaga acttcatatg cattccattc      2220
     ttttatgccc caagcagttg agtatacatt caatttcgtt agagttgaag aggatagtat      2280
     cataaaagta gttgaatctc tcaattccag tgctgctagt ggactcgata gaatttccgt      2340
     aaagtttata caaaagtgca gaggttatct aatcggcaaa ataacwgagc tagtaaatga      2400
     agcgattcat acttgcgtat ttgatgacac cttaaaaata gcaaaaatta tccctgtata      2460
     taaaacaggc agtaaatatg ataaaactaa ttaccgtcct atctcagttt tacctacgct      2520
     gtcgaaaata gtggaaaagg ttctgactca acaactttcc aattacatat ttcaaaataa      2580
     tctagtccac actaatcagt ttggttttgt accgaaatca agcactgaat cagcaactct      2640
     agaacttata aactttgtag tgaaaggact agacgatggt caatttgtgg cgtgcatwtt      2700
     tatagaccta aaaaaagcgt ttgattgcat tcctcatgaa atcttgctag aaaaattgaa      2760
     atattatggm ttgagtgttt cagctattca acttatgaca tcatacttct cgaatcgtca      2820
     acaaatatgc tgtgtgaatg gaatattaag tgatgccaaa gtcatttgta ctggagtgcc      2880
     ccaaggctca gttatgggac ctttactatt taaccttttt attaatgatt tactgcagtt      2940
     accattgaaa ggcttacttc aatgttacgc tgatgatgct gttagtaaat atagagcaaa      3000
     taatttgaat ttactccaag aaatgatgca acacgatttg gagttaatgc accaatggtt      3060
     ttctgccaac aaaatgtcta tgaacacaga aaagaccaat ttcatattat ttacaacatc      3120
     cttttatact cccagtttaa ccctttctat aaataatgag ccactgcgac aagtacagga      3180
     aacaaactat cttggattga ttattgataa tcgcctgaaa tggaataatc acattaacaa      3240
     ggtaaagaaa aaaattttgc cctacatttt tgctatgaaa aaagttcgta aatgtcttgg      3300
     agtacaaagt tgttggcaaa tatacagttc ttatatcctt tctcaattga catatttggt      3360
     ttgcatatgg ggttccgcag caagcacaca tctgaatgta ttgaaagttc ttcaaaatcg      3420
     agccataaaa tctataagaa ggttacccac actatttccc actattgcac tttataccta      3480
     taaatattta tctttgagtg atctgtacag atttagtttg attttcacta tttataagat      3540
     caaaaatgga attattaaaa gcaatattga aatcatacca gcaactaata tacattcaca      3600
     tgctaccagg aatagggata ggttttatac caatagacct cgaactgaat tagcttcaag      3660
     acacattttt tatgcaggaa tagtgaatta caacttatta cccaacaaca ttagaaatga      3720
     aacaattgca ctgaatttca aaagaaaact aaaaacatat attgttgaaa acatgtaaat      3780
     aaaattcatt gatgaataga attaagatat tagagtaagt taaattataa gatgctcaca      3840
     tcgcctaatt atatttccca gctaagtagc tgcgcacagt ttgtacaaac ttttcagcta      3900
     tgtattgaaa taaagcaaaa aaaaa                                            3925
//
ID   Crack-4_CP  repbase;    DNA;    INV; 4307 BP.
XX
AC   .
XX
DT   14-JUL-2009 (Rel. 14.07, Created)
DT   14-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Culex pipiens Crack non-LTR retrotransposon.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-4_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-4307
RA   Kapitonov V.V. and Jurka J.;
RT   "A family of Crack retrotransposons from Culex pipiens.";
RL   Repbase Reports 9(7), 1335-1335 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           223..975
FT                 /product="Crack-4_CP_1p"
FT                 /note="ORF1."
FT                 /translation="MSNRRSNTAKAGKESKSNGDVAQQLEEISAKLSKLDE
FT                 LEKLNRDLLGQLLKLSHRVTEVTVENRLLRQEIEDLKQERLQEEVLIKGFK
FT                 LQGPEHHQEVFHKVCEVIGADVAENVKEVRPLIFKQNRKTDAVLVKFWRVG
FT                 DKHQFIQRVRALKRPITPGDLNIKSINKFVLIQDHLTPEKQRVHRLTWELC
FT                 KLGLQKPWFYKGSTWVTHPETQKRLRVADSKDVDELQFLLVTQGKVNTNSN
FT                 LDNQVTVSDD"
FT   CDS           979..3960
FT                 /product="Crack-4_CP_2p"
FT                 /note="ORF2."
FT                 /translation="MEDIEQYLDFQHNNKYFDKIDDYDREFQNFNGISILQ
FT                 VNTRSINKIDRFDNLKTQISKLIFKPQIIVVSETWIPINLIQLYNIDGYES
FT                 FFSCRRDGRGGGLAVFVSKKLNFSVTVNQEVFSNSNSFHFLQLIVTGSSNK
FT                 SLIISAYYRPPDDTILTDFLQHLDNTLDSGDSAHVVVGDINIDSNSSSRKL
FT                 DKYLNIISSFGFAITNTNLTRPSSESIIDHVLFNYHDNFSIINDTIYNPDS
FT                 DHNFIISSIDFTLNNNPPDIRYKLHTNYTKLQQLLEMRFSPAYMGNYEDPN
FT                 AFYDYFINTLTKSISESTTKYLIKNKTSACPWVNDNLQSLYNSSRNLKKKK
FT                 NKLLSQGKNVDHIEIKIEALSDKIKNCSSILYQNYYTDKFSGSKSTKDIWN
FT                 NINDVLGRKHKDKIPKTMTKLTDSGVKVTIDSQQTIANEFNSFFTSIGKSL
FT                 ANNIPKTLNDDINKFRTLKNCQRSFNLEPTNEYEIINLIDSLSNNTSCGHD
FT                 KISAFILKKVKLIIAPILTNILNLSMVNGFYPDQLKIARVTPIFKSGSNSL
FT                 FNNYRPISVLSSINKIFEKILFQRLNHFLISTKFFCTQQYGFRQKSSTTNA
FT                 VIDLVNKIQRHLNDKEDVLGLFLDLSKAFDTVDHNILLAKLERAGVRGIPL
FT                 DLFKSYLSNRSQFVSFDGIKSNIKFIDVGVPQGSVLGPLFFIIYLNDLAFL
FT                 SLKGKLKLFADDSSFLYNNKSASVNDKNLHDDLKTLVEYFRINKLTLNINK
FT                 SNIINIKNSNRSIPNRLTLTKNSFPDVKVIDECKYLGIILDNRLNWSPYIN
FT                 SLLLKLNKITGIIYKIKHKLPLSVLLLIYHSLFSSHLSYITAVWGNACNIL
FT                 INKVQIAQNKFLRIIFNLPIRSHSVDLYTKFKNIYPVRGIYIIQSCCFIYS
FT                 CLANQTHSNTKFEPSTHNHFTRNHDSLQRPNVSTLAGERSITFKGAQLYNF
FT                 FSNKFGDCLSLSIFKKQLTNFLSEPAILEKLLKTYDFHI"
XX
SQ   Sequence 4307 BP; 1376 A; 808 C; 720 G; 1403 T; 0 other;
     atcttctggc aacactgcta cggaaaggtc ggctttgttt acgctcccgc gatttcggtt        60
     aatttattaa tcaatttcaa tttttcatta ctttttccgg taaatacgac cttggggccg       120
     ttggatcgtc gctgggattg tggagtctgg tcggagctgc ttaatttgca gaggaaattg       180
     actcttcccc ctctccggga ggcgagctga gttgaggtta ggatgtcgaa ccggcgctcg       240
     aacactgcca aggcagggaa ggagtcgaaa tcgaacggtg acgttgccca gcaacttgaa       300
     gagatctcag ctaagctatc caagctcgac gaactggaga agctgaaccg ggatctgctg       360
     gggcagttgc tcaaactgtc gcacagagtg accgaggtca ccgtggaaaa tcgactcctg       420
     aggcaagaga tcgaggactt gaagcaagag cggttgcagg aggaggtgct gatcaagggc       480
     ttcaagctgc aaggtccgga acaccaccag gaagtctttc acaaggtctg cgaggtgatc       540
     ggggctgacg tggcggagaa cgtcaaagag gttcgtccgc tgatcttcaa gcagaaccgg       600
     aagacagacg cagtgctggt gaagttctgg agggttggtg acaagcacca gttcatccag       660
     cgagtgcggg ctctcaagag gcccatcaca cccggcgact tgaacatcaa atcgataaac       720
     aagttcgtct tgattcagga ccatctgacg ccggagaagc agcgtgtgca tcggctgact       780
     tgggagctct gcaagcttgg actccagaag ccttggttct acaagggttc tacctgggtc       840
     acccaccccg aaacccagaa acgactccgc gttgctgatt ccaaggacgt cgacgagctc       900
     cagtttcttc tggtcacgca agggaaagtc aacacaaact ccaacctcga caatcaggta       960
     acggtatcag acgactaaat ggaagatatt gagcaatatt tagactttca acataataac      1020
     aagtattttg acaaaattga cgattacgac agggaatttc agaactttaa cggtatctca      1080
     attttacaag tcaacacgag aagcattaac aagattgatc gatttgacaa tcttaaaact      1140
     caaatctcaa aattaatttt taagcctcaa attattgttg tcagtgaaac gtggattcct      1200
     attaatctaa ttcaacttta caatattgat gggtatgagt cgtttttctc gtgtagacgc      1260
     gatggacggg gagggggatt agctgttttt gtctcaaaaa aacttaattt ttctgttact      1320
     gtaaatcaag aggtcttttc taattctaac tcttttcatt ttttgcaatt aatagttact      1380
     ggttcttcta acaaatcact cattatttct gcgtactata gacccccaga tgatacaatt      1440
     ttaactgatt tcttgcaaca tttagacaat actttagatt ccggtgattc tgcacatgta      1500
     gttgtgggag atataaacat tgactctaat tcctcttcaa ggaaactcga taaatatttg      1560
     aatataattt catcctttgg ttttgcaata acaaatacta acttaacgcg tccatctagc      1620
     gaatcaatca ttgatcacgt tttgtttaac tatcatgata atttttcaat aatcaacgac      1680
     accatctata atccagacag cgatcataat tttataattt catctatcga tttcactctt      1740
     aataacaatc cacctgatat tagatacaaa cttcatacta actatactaa attgcaacaa      1800
     cttcttgaaa tgagattcag cccagcttac atgggtaact acgaagatcc taacgctttt      1860
     tatgactatt tcattaatac cttgaccaaa tctatatcgg agagtacaac taaatactta      1920
     attaaaaata aaacttctgc ttgtccatgg gtcaatgata acttacagtc tttatacaac      1980
     tcatctagga atctaaagaa aaagaaaaat aagcttttat ctcaaggtaa aaatgtagat      2040
     cacatcgaaa tcaaaattga agctctttct gataaaatta aaaattgttc aagcatatta      2100
     tatcaaaatt actatacaga taaattttct ggttcaaaat ccactaagga tatttggaat      2160
     aacattaacg atgttcttgg tcgaaaacat aaagataaaa tacctaaaac tatgactaaa      2220
     ttaactgatt caggtgtgaa agtcacaatt gatagccaac aaactattgc aaacgaattt      2280
     aactcttttt ttacttcaat tggcaaatca ttagcaaata acattcctaa aactttgaac      2340
     gatgatatta ataaatttcg tactttgaaa aactgccaac gatctttcaa cttagagcct      2400
     actaatgaat atgaaataat taatcttatt gattctctta gtaataacac tagttgtgga      2460
     catgataaaa tttctgcatt tattttaaaa aaagtaaagt taattattgc cccaattctc      2520
     actaacattt taaatttatc tatggttaat ggtttctatc ctgatcagtt aaaaatagct      2580
     agagttacac ctatatttaa atccggatcc aattcacttt ttaataatta tcgtccaata      2640
     tctgttcttt cctcaataaa taaaattttc gaaaagatcc tttttcaaag attaaatcac      2700
     ttcttaatta gcacaaaatt cttttgcact caacagtatg ggtttagaca gaaatcttct      2760
     acaactaacg cagtaattga cttagttaat aaaattcaac gccacttaaa tgataaggag      2820
     gatgtgcttg gactgttttt ggatttatct aaagcttttg acaccgttga tcataatatt      2880
     ttgttagcta aacttgaacg ggctggtgtt cgtggtattc cgctagattt gtttaaaagt      2940
     tatctatcta atagatccca gtttgtaagt tttgatggta ttaaaagtaa tattaaattt      3000
     attgatgtag gtgttccaca aggctcggtt cttggaccat tatttttcat aatttactta      3060
     aatgatttag cattcctatc tcttaaaggt aaattgaaac tttttgctga cgattcttct      3120
     tttctgtata ataacaagtc tgcttccgta aatgataaaa acttgcacga tgatctcaaa      3180
     actcttgttg aatatttccg aattaacaaa ttaactttga atattaataa atcaaatata      3240
     ataaatatta aaaactctaa tcgttccatt ccaaacagat tgacactaac aaaaaacagt      3300
     tttcctgatg ttaaagtcat agatgaatgc aaatatcttg gaattatctt agataacaga      3360
     cttaattggt caccttatat aaattcatta ttactaaagc ttaacaaaat aactggaatc      3420
     atttataaaa tcaaacataa attaccttta agcgtccttt tgttaatata tcattcattg      3480
     tttagctctc atctttcgta tataactgct gtttggggta acgcatgtaa cattcttatt      3540
     aacaaagttc aaattgctca gaacaaattc ttaagaataa tctttaactt gccaatccgt      3600
     agtcattccg ttgatttgta cactaaattc aaaaatattt atcctgtaag aggcatttac      3660
     atcattcaat catgctgttt tatttattca tgtttagcaa atcaaactca tagtaataca      3720
     aaatttgaac cctccactca taatcatttt acaagaaacc acgattcatt acagcgtccc      3780
     aatgtttcaa ctttagctgg cgaacgaagt attacgttta aaggtgctca attgtataac      3840
     tttttttcaa acaagtttgg tgattgctta agcctatcta ttttcaaaaa acagctaacc      3900
     aatttcctgt ctgaaccggc tatcctagag aaacttctca aaacctacga tttccatata      3960
     taataatttt tttttttctt ttttcttgct tccatttcgt aactgaatag aactgatact      4020
     gttgctctgc ttgttctttt ttatccttga attatttgat cctgctttgc cttttctttc      4080
     ttttattcct tttcagatga ttcagccagg agtgtaggag tccagctcaa ccgagctcct      4140
     cgcgaagatg gagctctgga tccagccgtg ttatttgtat tttgtcactc atgtatttat      4200
     gttttgtatt atgtgtttac aaaaagaagt aggtttttgg tgccactgct ttggtggctt      4260
     ttcctgcctt aaaaaaagta aaaataaaat tcaaaaataa aattcaa                    4307
//
ID   Crack-4_CQ  repbase;    DNA;    INV; 3380 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3380
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 35-35 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..2858
FT                 /product="Crack-4_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNKSVLNHKSAVKIFQWNIRGMNSLEKFDGVRELIDR
FT                 YGDPIDVLVLGETWVKEGNQEMYNLAGYKSIFSCRARSNGGLVVYVRSNIN
FT                 AKIVDIQSHNGFHLIHLLLSLGKMKLNLIAVYRPPGFPSGDFLDKLEAKLG
FT                 VLQSDQEVILLGDTNVPCNVEANSTVQEYVRLLSSFNLQVTNNITTRPASQ
FT                 NLLDHVVCSTGIPGRITNETVETELSDHSMILTSLEMKVEKVAKTLTTDIV
FT                 NHELLDELFARSITQFPGEVSAAERLLFAINQYKEALESATRTVTVKAKVK
FT                 GNCPWMTLELWQMIKIKEQVLKSSKQHPSNAHLRELVKHTSQLLSKRKAQS
FT                 KRNYYYNLITTSTPTNSWKLINEVLGRSKKKDSEILVRDQSGVLKDNIQAA
FT                 NXLNKHFCEVGENLASSIPSDRNVNHFRTLTRHDLTIYMRPATSQEVIVLI
FT                 GQLNPKKSPGPDRIPASFIKKHHLLFAELLKDAFNEMIETGVYPDFLKEAR
FT                 VVPIFKSGDPTDVNNYRPISTLSMLNKLLEQMVAARLSSFLDTHKHLYNQQ
FT                 YGFRKGSSTLTATCELLKDIYDSLDERKFCGALFLDLQKAFDTINHELLLQ
FT                 KLEFYGIRGKANSLLRSYLTNRMQHVSVNGTRSESRRISTGVPQGSNLGPL
FT                 LFLVFINDLSRLQLTGKIRLFADDTLLLYSSRDCRTIRNNMLEDLTILNQY
FT                 FASNLLSLNVSKTKFVMFHTCQRRVPELSPIRFGNQVVERVSHFKYLGLVL
FT                 DETLSWEAHIQHLKRCIAPICGVIRKLASFIPSVWLLKLYFALVQSRLQYL
FT                 ALNWGTAAAFRLRELQTLQNRCLKSILAKPYLYPTRQLYIDAPETVLPVRG
FT                 LHMQQTLVHMWNMLKDDATHHNLEFEIINSMTRQNGDIRIPRSNTELCKNR
FT                 VTYVGSKLFNELPNDLKELNSKVVFKKNLRRHIKNNLLNALS"
XX
SQ   Sequence 3380 BP; 1056 A; 806 C; 702 G; 812 T; 4 other;
     acaattttga agaatgtatt atgaataaaa gcgttttaaa tcacaagtcg gctgtgaaga        60
     tctttcaatg gaacattcgg ggaatgaaca gtctggagaa gtttgatggc gttcgggaac       120
     tcattgatcg ttatggagat ccaattgatg ttcttgtact aggggagaca tgggtcaagg       180
     agggcaacca ggagatgtac aacttagcgg gctacaaaag catattttct tgtcgagcaa       240
     ggtcaaacgg tggattagtt gtatatgtcc gcagtaatat caacgcgaaa atcgtcgaca       300
     ttcaatcgca taacggtttt cacttgattc acctgctgct gtctctggga aagatgaaat       360
     taaacttgat tgcagtatat cgcccacctg gatttccttc tggcgacttt ctggacaaat       420
     tggaagcaaa actaggagtc ttgcaatctg accaagaggt tatccttctg ggagatacca       480
     acgttccgtg caacgtggag gcaaacagta ctgtgcagga gtacgttcgg ttgttatctt       540
     cgttcaatct gcaagtcaca aacaacatta ccactagacc agcaagccaa aaccttcttg       600
     atcacgtggt ttgttctacg ggcatcccag gaaggataac aaatgaaacg gttgagacag       660
     aattgagtga tcattcaatg atcctgacat ccctggaaat gaaagtggaa aaggtggcta       720
     aaacattgac cacagacata gtaaatcacg agttgctgga tgaattgttt gctcgttcga       780
     ttacgcaatt tccgggggag gtcagtgctg cggagcgtct cctgtttgca atcaaccaat       840
     acaaggaagc cttagagtcc gctacaagga ctgtgactgt aaaagcgaag gtgaagggaa       900
     actgtccatg gatgactttg gagctgtggc agatgatcaa aatcaaggag caagtcttga       960
     aaagcagtaa acaacaccct agcaatgcac acctccgaga acttgttaaa cacacttcgc      1020
     aactgctgag caagagaaaa gcccagagca aaaggaatta ctattacaac ctaattacta      1080
     catctacgcc gacgaactcg tggaagctga tcaacgaagt ccttggaaga tcaaagaaga      1140
     aggattcgga aatacttgta agggaccaat ctggagtatt gaaagacaac atacaagctg      1200
     caaacwcgtt gaacaagcac ttctgtgaag tcggagaaaa cctggcctca tcaatcccaa      1260
     gtgacagaaa cgtgaaccac ttccgcaccc tcacccgcca tgacctgacc atttatatga      1320
     gacctgcaac atcccaagaa gtcatcgttc tgattggcca attgaacccg aaaaagtcac      1380
     ctggaccgga caggatacca gcttcattca tcaaaaagca tcatctgttg ttcgctgaac      1440
     tcctcaaaga tgccttcaac gagatgattg agacaggagt ttacccggac ttcctgaaag      1500
     aagctcgagt ggttcccatt tttaaatctg gtgacccaac ggacgtgaac aactacagac      1560
     ctatttcaac tctatccatg cttaacaaac tgttggagca aatggttgca gcgcgcttaa      1620
     gtagctttct ggatacccac aaacatctat acaaccagca atatggattt agaaaaggct      1680
     ccagtacact aacagccacc tgcgagctac tcaaggacat ctacgacagc ttggacgaga      1740
     gaaaattttg tggtgcactg tttctggatc tgcaaaaggc gtttgacacg attaaccacg      1800
     agctgttatt acaaaaacta gaattctatg gaattcgcgg aaaagcaaac agtcttctta      1860
     ggagttacct gacgaaccga atgcagcacg tgagtgtcaa tggcacaaga agcgaatctc      1920
     gacgtatatc gaccggagtt ccgcagggga gcaatctcgg cccattgttg tttttggtgt      1980
     ttatcaacga cctgtctcgc ttacagttga ctggaaaaat acgtctcttc gctgatgaca      2040
     cgctcctact ttatagtagt cgagactgtc gcaccataag gaacaacatg ctggaagacc      2100
     tgaccatact taaccagtac tttgcgtcga acctgctgtc gctgaacgta agcaaaacaa      2160
     aatttgttat gttccataca tgtcaacgaa gagttccaga gctgagtccc ataaggtttg      2220
     ggaaccaagt ggtcgagcga gtctcccact tcaagtacct tggacttgtc ttggacgaaa      2280
     ccttgtcatg ggaagcgcac atccagcact taaaacgttg tatagcgcca atctgcggag      2340
     tcatcaggaa actagcttct tttataccat ctgtttggtt gttgaaattg tacttcgccc      2400
     ttgtacaatc tagattgcag tatctcgcac tgaactgggg tacagctgcc gctttcagac      2460
     tacgtgaact ccagacactg caaaaccgtt gcctgaagtc aattcttgca aaaccctacc      2520
     tctacccaac acgccaactc tatattgacg ctccggaaac tgtccttccg gttcggggac      2580
     tacacatgca gcaaacacta gttcacatgt ggaacatgtt gaaggatgat gccacccacc      2640
     acaatttgga gttcgaaata attaactcta tgacaagaca aaacggggat attcggattc      2700
     cccggtcmaa cacagaactc tgcaagaacc gggttaccta cgttggaagc aaattgttca      2760
     acgaactccc caatgacctg aaggaactaa actccaaagt agtattcaaa aagaacttac      2820
     gccgacatat aaaaaacaat ctactgaacg ctttgtcctg atcctccact aaccaatatg      2880
     aaaaaatctg ctcttgtcgt ttccgccgcc accgaccgcc cgccgcccgc caccaaccgc      2940
     ccaccgccaa ccgcccaccg ccaaccgccg atcgccaccg cccactgcca accacccatc      3000
     gcccaccgcc caccaccagc cgttacccta cactgcccat cacacacact ttcgtctgaa      3060
     caccaccaaa ttgaaattcc acacactatt tattaacatt tgaacgccaa gattagcact      3120
     ctcttaaaag agcaaacttt gctcactgag atgtgcaaat aatgtaaatg ttaaatgtat      3180
     twtttttgaa aagatagtag gttttatgcc ctagtgcttt tgtcctacma aaaaaaaatg      3240
     tactgcagaa aaaaaatata actgcaaata aagaaaagaa ctatcgagcc taacctcaat      3300
     accttgaggt aggtgaaaaa ttccagtata gtaagctgtg aaattgcgta attcgatctt      3360
     ttcaaaaaaa aaaaaaaaaa                                                  3380
//
ID   Crack-5_AAe repbase;    DNA;    INV; 3169 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3169
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1221-1221 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >93%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP). This consensus is likely
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..2988
FT                 /product="Crack-5_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ITLIKINYKAELINELNINFCLEEIKLDKENLNILYL
FT                 NTRSCRNKEEELYQLINEFDGSVHVVVFAETWLYKNEIFNLLGYDAYHCCR
FT                 DGRGGGVSIFVLSDYRSQLMLEISSEDNNFLMVELIDQNVKIMGVYNPGRS
FT                 FNLFFEQLEQILHNYKRIIVCGDFNINLLDSSGELIRQYTYKIQSLGYIIL
FT                 NKLDARYATRISNTIATVIDHIITDIFEYDLQFGIKDTERLISDHRTLTLS
FT                 MRIENHKKYKPDHKKICVNYENIIRSTSQNTFEICQQFSDIVVVLNEIITK
FT                 NRTEILSRKKAMVIRKPYINNALIAEIHNKNELYRQYRTAPEGVLKDELYI
FT                 LYARKRNMLKNKIKFAKEQYYGRKIHQNINNYKKTWSTLREIIFQNGSENI
FT                 TPQALTLKENGKIIDSAAQIAKCFNEYFINIGWNIQQNGTGNNNFLIYLNT
FT                 MPETRFSFSVVETEKVKNVINSLKSGASVGLDKISTKCIQKCVTLIAPKLT
FT                 EIVNNMILSSQFEDCLKIAKIVPLYKSGDKFSKSNYRPVSILPALSKIPEC
FT                 IMNEQIKHHLLQNELLNKNQFGFLPKKSTETASLELLNFIVKGLDDGEYVG
FT                 CIFIDLRKAFDCISHELLIAKLSFYGFTPSAVSLLKSYLANRKQQCQVNGV
FT                 LSEPLLIKSGVPQGSIIGPILFNIFINDLFNIPLKGKLQCYADDAVLKYRA
FT                 KDLETLQSMMQHDLQLLPSWFSANKMQINNKKTNFIIFSLKTSNVSLDLYI
FT                 NNERLSQVTEVDYLGLAIDESLNWKSHITLVKNKITPFIFALRRVRGCLST
FT                 KSCWQLYNAFILPHLSYMNTVWGSAAASHLNVLKVLQNRVIKTIRKLPLLF
FT                 PSASLYSPEVLPLNLLHKYNCLILVYKIKYKLVESNIRLIEFHDLHSHSTR
FT                 ARQNFYVSRPRTELALKHFFYSGITQFNALPNHLKLELNLSSYKKKLKKYL
FT                 FENN"
XX
SQ   Sequence 3169 BP; 1180 A; 455 C; 535 G; 999 T; 0 other;
     ggtattccaa cgggaatgtc ttcttacgta aggatgaaag ttctaaggca atccatgtga        60
     gtgatgttag tgttctatca tcaattgtgt aatatttcct gattaagtta aattactttg       120
     attaaaataa attataaagc agagctaata aacgagttga atattaattt ctgtttagaa       180
     gagataaaac ttgataaaga aaatcttaat atcctgtacc taaatacaag aagttgtcgt       240
     aataaagaag aagaattgta tcagttaata aatgagtttg atggcagtgt acatgtggtg       300
     gtttttgcag aaacttggtt atacaaaaac gaaattttta atctattggg atacgatgcg       360
     tatcattgct gtagagatgg aagaggaggt ggcgtatcaa ttttcgtgtt atcagattat       420
     cgaagccaat taatgttgga aataagttcg gaggataata atttcctgat ggttgaattg       480
     atagatcaaa atgtaaaaat aatgggagtg tacaatcctg gtaggtcatt taatttattt       540
     tttgaacaat tggaacaaat tctacataac tacaaaagaa ttatcgtatg tggtgatttc       600
     aacataaatc tactagattc atcgggagag ttaattcgcc agtacacgta taaaattcaa       660
     tccttgggat atataatact taacaaatta gacgcacgct acgctacacg tatatctaat       720
     acaattgcca ctgttataga tcatattatt actgatatat ttgaatatga cctacaattt       780
     ggaataaaag acacagaacg cttaatatca gatcacagaa ctctaacttt gtcaatgaga       840
     atagaaaacc ataaaaagta taaacctgat cataaaaaga tttgtgtgaa ctacgaaaat       900
     attataagat caacttcaca aaacactttt gaaatctgtc agcaatttag tgatattgtt       960
     gtagtactaa atgaaataat aactaaaaac agaacagaaa tattatcaag aaaaaaagca      1020
     atggtcatta gaaaacctta tataaataac gcattgattg ctgaaatcca taacaaaaat      1080
     gagttatata ggcaatatag aacagcccca gaaggtgttt taaaagatga gctttatatt      1140
     ttgtatgcaa ggaagcgaaa tatgttgaaa aataagatca aatttgccaa agagcagtac      1200
     tatgggcgca aaatacatca aaacataaat aactataaga aaacttggag cacacttagg      1260
     gaaatcattt tccaaaacgg ctccgaaaat ataacaccac aggcgttgac attaaaagaa      1320
     aatggtaaga ttattgattc agctgcacaa atagcaaagt gctttaatga atattttatt      1380
     aacattggtt ggaatattca acagaacgga acaggaaata ataatttttt aatctattta      1440
     aatactatgc cagaaactcg tttttctttt tctgttgttg agacagaaaa ggtgaaaaat      1500
     gtgataaatt ctttgaaatc aggagcatca gttggactag ataaaatttc tacgaaatgt      1560
     attcaaaaat gtgttactct tattgcccca aagctaactg aaatagtaaa taatatgatt      1620
     ctttcttcgc aatttgaaga ctgtttaaaa atagcaaaaa tagttcctct atataaatcg      1680
     ggagataaat tttcaaaatc aaattacaga cctgtttcga ttctaccagc cctgtcgaag      1740
     atccctgaat gcattatgaa tgaacaaata aagcatcatt tgctgcaaaa tgaacttctg      1800
     aacaaaaacc agtttggttt cctgccaaag aagagtactg aaactgcttc gttagaactt      1860
     ttgaacttta tagtgaaagg gttagatgac ggagaatatg ttgggtgtat ttttatagat      1920
     ttacgtaaag ctttcgactg tatttcccat gaacttctaa tagctaaatt aagtttctat      1980
     ggttttacgc cttcagcagt gagtttacta aaatcatacc tagcgaatag aaagcagcaa      2040
     tgtcaagtca atggagtact tagtgaaccc ttgttgataa agtctggtgt acctcaaggg      2100
     tcaatcatag gacccatact atttaacatt ttcattaacg atttattcaa tataccattg      2160
     aaaggaaaat tacagtgtta tgcggacgac gctgttctta agtatagagc aaaagattta      2220
     gaaacgttac aaagtatgat gcaacacgat cttcagttac ttcccagctg gttctcggca      2280
     aataaaatgc aaattaacaa taaaaaaacg aatttcataa tattttctct aaaaacttca      2340
     aatgtatctt tggacttgta cattaataat gagcgtctgt ctcaggtcac tgaggtagac      2400
     tatttaggtt tggcaattga cgagagtttg aactggaaaa gtcacataac attagtaaag      2460
     aataaaataa ctccttttat atttgctcta agaagggtta gaggttgtct aagcacaaag      2520
     agttgctggc aattgtataa tgcattcata ttacctcact tgtcttatat gaatacagtt      2580
     tggggatcag ctgcagcaag tcacttaaac gttttgaaag ttctacaaaa cagggttatt      2640
     aaaacaattc gaaagcttcc acttctcttt ccaagtgcaa gtttatactc accagaagtt      2700
     ttgcctttaa atttgctgca caaatacaat tgtttaattc tggtgtataa aatcaaatat      2760
     aaattggtag aatcgaatat tcgtcttatt gaatttcatg atttgcattc tcatagcaca      2820
     agagcaagac aaaactttta tgtttcaagg ccacgtacag aattagctct taaacatttt      2880
     ttctactccg gaataactca gtttaatgcg cttcctaatc atttgaaatt agaattaaat      2940
     ttatcatctt ataaaaagaa attgaaaaag tatctatttg agaataattg agatgtccat      3000
     attgaattat tgaaatgtaa tgaattaatg ttagtattaa gtagaaaata agaaacattg      3060
     ttagattata agcttgctcc ctcgaaatat tttacttttc gagtggctgg acacagttaa      3120
     ttatgtaact tctacagctg cgttgttaaa taaagcaaaa aaaaaaaaa                  3169
//
ID   Crack-5_CQ  repbase;    DNA;    INV; 4716 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4716
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 36-36 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..1440
FT                 /product="Crack-5_CQ_1p"
FT                 /translation="MIGGSMETDDSVTCCVCSEEENDLTAVITCMYCFSSS
FT                 HLKCRGITNKSAHRMREKPYFCSTKCADIYQKITEMQRNDKSLISSISSQL
FT                 NATVTKVVETQMKQVKAEVKSVTTAVESSQNFLSEKFDKIVSDFNEMKSDN
FT                 TRLNLEVDLLKRSHSDLAGTVYKLESSVDKSNKLAVSHNLIVLGLPSSANE
FT                 NIMNIVNKTFACIGVDVASVSFTASRLYSEPKNSNIVVPIRVIFDEVTMKD
FT                 YVLDKKREFGQLKSNVINRTLLLNGNATNIAIREEMTPLGLELLKEMRDNQ
FT                 KSLNIKFVWPGRGGVVLVKKTDDSPTEKIANRDDLNRLIARYKNINRPCSD
FT                 SSSXGQEQQEGKKRKVKK"
FT   CDS           1488..4376
FT                 /product="Crack-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MYNEIKNFSHDNIEDFNASYSLNENKFLKILQWNVRA
FT                 INDLNKFDDILQTLDSSKTSVDIVVLGETWLKNDFCALYEIPNYNSFFSCR
FT                 DQSNGGLAVFVHKNSTSKLLKNVCIDGFHHIQIELIIKGHFYHIHGVYRPP
FT                 NFDYGRFADYLENILSCTPVNYSCIIVGDVNIPINRALHNISDRYLRLLES
FT                 YNYICSNTVPTRPLSGNILDHVLCKVDDSCCLRNDTISHYLSDHSPIISSF
FT                 KLPIDKEKIKLSKTIVNHRKLNNAFDNFINNFDHVTDVSNSLLLITSTYNS
FT                 LLEKNTRTVEKSITVKGNCPWMTFDLWTLCKIKNNYIKRVKRNPTNQHLKD
FT                 MLNHISQKVDDTKTKCKKLYYEKLLNVTNHSKLWSNIKVVFGVGKKNNKIC
FT                 LVNNGTRTNNDAEVCEVFNNFFSNIGSQLAANIPRNLNSNPINNLSRIDHT
FT                 IVLWPSNENEVITLIKSLKNKKSCGPDNFPVNILKRNCGIFAQILSQCFNL
FT                 MLVTGEYPECLKIAKVIPVFKAGDPDDCNNYRPISTLSVFNKIFEKLLVNR
FT                 LVKYLSKRKILYKFQYGFRQGSSTQTAILELVDDIIKEVDSKKSVGALFLD
FT                 LKKAFDTLDHSILLKKLEMYGIRGLANDLIKSYLSNRKQFVAINDARSSNQ
FT                 TIGVGVPQGSNIGPLLFLLYINDLGKLQLCGTPRLFADDTALFYPNKNINT
FT                 IIESIEADLGVLKNFFDANLLSLNLSKTKYMIFHSIRKVITEHEHPRLGNQ
FT                 EIEKVNCFKYLGIHLDPTLSWAYQVNHVEKKLAPLCGMLWRVRNFVPRHVL
FT                 LKFYFAYFHSQLNHLVSTWGYASSTSLKKIRTLQNRCLKTIFYKPLLYPTL
FT                 QLYSELSHTILPLNYLRDYQTLVFVHNLLNNPVMHHNITLPSAPHFHSTRQ
FT                 NDHLRREQASTNLGQRRISFIGPTKYNTLPLDLKQTTSTSIFKIRLKQHLK
FT                 HKLHELFQ"
XX
SQ   Sequence 4716 BP; 1588 A; 816 C; 792 G; 1513 T; 7 other;
     gtcggaacga ttgacgtaac tgctaacaat ccctcataat tagtaattaa tacatggccc        60
     ttggtctttt cattttgatg attcattatt ttaatgttgt ctgtgatgat ccttattaaa       120
     taaattatat atattttttg ctcgactgct cattactcct tgcacacaca tctggcctgc       180
     cttcacactt gtttatacag tcagtacatc catactccac acttgtctta gtgcggtgtg       240
     tgcattgttc atcccatcag cttgacatcc cattaatgaa aattgwcttt ttggttttgt       300
     ttgtatgtaa ctgtatgtgt tttgtttatt tttgcggctt tttaatctga tttcaaaatg       360
     attggtggct cgatggaaac tgacgactca gttacttgct gtgtctgctc agaagaagaa       420
     aatgatttaa ctgcagtcat aacgtgcatg tattgtttct caagtagtca cttgaaatgc       480
     cgcggaataa caaacaaaag cgctcatcgt atgcgtgaaa aaccttattt ctgttcaacc       540
     aaatgtgcgg atatttatca aaaaattaca gaaatgcaaa gaaatgacaa atcccttatt       600
     tcttccataa gctcccagtt gaatgctact gtgaccaagg ttgttgagac gcaaatgaag       660
     caggtaaaag ctgaggtgaa atctgttacc acagctgtgg aatcatcgca aaatttctta       720
     tctgaaaaat ttgacaaaat tgtgtccgat tttaatgaaa tgaagtcgga taacacacgc       780
     ctaaatcttg aagttgatct tttgaagcgt tctcattctg atcttgcagg gactgtttac       840
     aaactcgaat cgagtgtaga caagtctaac aaattagctg tgtctcataa tttaattgtg       900
     ctggggctgc cctcatcagc caacgaaaat attatgaata ttgtaaacaa aacattcgcg       960
     tgtattggtg ttgatgttgc atctgtttcg tttacagcga gcagattgta ctctgaacct      1020
     aaaaacagta atattgtggt accaattagg gtaatatttg atgaagtaac aatgaaagat      1080
     tatgtactgg ataaaaaacg kgaatttgga caactaaaat ctaatgttat taacagaact      1140
     ctattattga atggaaatgc gactaatatc gcgattcgtg aagaaatgac tccgctgggg      1200
     ttagaattgt tgaaagaaat gcgtgataat caaaaatctt tgaacattaa atttgtttgg      1260
     cccggtcgcg gaggagttgt tcttgtmaaa aaaactgatg atagtcctac tgaaaaaatt      1320
     gccaatcggg atgatttgaa tcggctgatt gctcgctaca aaaacattaa tcgtccatgt      1380
     tcggattcta gttcgsccgg acaggaacag caagagggta agaaacgtaa agtaaagaaa      1440
     taaaacaaaa aatcttgact tagtactgat gcaaatttta tttaaaaatg tataatgaaa      1500
     ttaaaaattt ttcgcacgat aacattgaag attttaatgc aagctactct ttgaatgaaa      1560
     ataagttttt aaaaatacta cagtggaacg ttagagcaat caatgatctt aacaaatttg      1620
     atgatatttt gcaaaccttg gacagcagta aaacttctgt tgatatagtw gtcttaggcg      1680
     aaacctggct gaaaaatgat ttttgtgcac tttatgagat acccaattat aattcatttt      1740
     tttcatgtag agatcaatct aatggaggct tagcagtttt tgtacataaa aattctacaa      1800
     gtaaattatt gaaaaatgtt tgtatcgatg gctttcacca cattcaaatt gaactcataa      1860
     taaaagggca cttttaccat attcatggag tttatcggcc acccaatttc gattatggga      1920
     gatttgctga ttacctggaa aatattttaa gttgtacacc tgtaaattat tcatgtatta      1980
     ttgtgggaga tgtcaatata cctatcaaca gggcactcca taacatttct gatagatatc      2040
     taagattact ggaatcgtat aattatattt gctcgaatac agtccccaca agacctttaa      2100
     gtggcaacat tttggatcac gtgctgtgta aagtagatga ttcatgttgt ttgcgaaatg      2160
     atacaatttc tcattattta agtgaccatt caccaattat ttcctctttt aaattaccaa      2220
     tcgataaaga aaaaattaaa ttgagtaaaa ctattgtaaa ccacagaaaa cttaataacg      2280
     ctttcgataa ctttatcaac aattttgatc atgttacaga tgtcagtaat tccttgctgt      2340
     tgatcacctc aacttataat tcactgttgg aaaaaaatac acgaactgtt gaaaaatcaa      2400
     taaccgttaa gggtaactgc ccttggatga ctttcgattt atggacgctc tgcaaaataa      2460
     aaaacaatta cataaaacga gtcaaacgaa acccaactaa tcaacacttg aaagacatgc      2520
     ttaatcatat ttctcagaaa gtagatgaca cgaaaacgaa atgtaagaaa ttgtattatg      2580
     aaaaattact gaatgttact aatcactcaa agctttggag taatattaag gttgtatttg      2640
     gcgtagggaa gaaaaacaac aaaatctgct tggttaataa tgggacaaga acaaacaacg      2700
     atgctgaagt ctgcgaagta ttcaacaact tcttttccaa tattggtagt caacttgcag      2760
     cgaacatacc acggaacttg aattctaatc caataaacaa cttaagtcga attgatcaca      2820
     caattgtact gtggccatcg aatgaaaatg aagtwattac tttaataaaa tctctcaaga      2880
     acaaaaaaag ttgcgggcct gataattttc ctgtgaatat tcttaagaga aattgtggta      2940
     tttttgctca aattctctca caatgtttta atttgatgtt ggtcactgga gaatatccag      3000
     aatgtttgaa aattgccaaa gttataccgg ttttcaaagc tggtgatcct gacgactgta      3060
     ataactatcg tccaatttcw actttatcag tttttaataa aatatttgaa aaacttcttg      3120
     tcaataggtt agttaaatac ttgtcaaaaa gaaaaatatt gtataaattt cagtacggat      3180
     ttaggcaggg atcaagcaca caaacagcga tacttgaatt ggttgatgat ataattaaag      3240
     aagttgactc taaaaaatct gtaggcgcat tatttttgga tctcaagaaa gcgttcgata      3300
     cgttagatca cagcattctt ttaaaaaaac ttgaaatgta tggcatccga ggccttgcca      3360
     atgatttaat taaaagttat ttgtcaaatc gtaagcaatt tgttgcaata aatgacgccc      3420
     gcagttctaa tcaaacaatt ggagttggtg tgcctcaagg cagcaacatt ggccctttgc      3480
     tatttcttct ttatattaat gacttaggga aactacagtt atgcggtact cctaggttat      3540
     ttgccgacga tacagctcta ttttatccaa ataaaaatat taacacaata attgaatcaa      3600
     ttgaggctga tctgggagta ctcaaaaatt tctttgatgc taatcttttg tcgttaaacc      3660
     ttagtaaaac caagtacatg atatttcatt caattcgtaa agtcataaca gaacacgaac      3720
     atccaagact agggaatcaa gaaattgaaa aagttaattg ctttaaatat ttgggaatac      3780
     acttagaccc gacactttcc tgggcatacc aagttaatca cgttgaaaag aaattggccc      3840
     ctttatgtgg catgctttgg cgagtgcgaa attttgttcc tcggcatgtt ctattaaaat      3900
     tttattttgc gtattttcat tcccaactga atcaccttgt gtcaacatgg ggctatgcct      3960
     ccagtacttc attaaagaaa attcgtacac tccaaaatcg ctgtctcaaa acaatttttt      4020
     acaaaccatt actgtaccca actttacaac tgtattccga attatctcat acaatacttc      4080
     ccttgaatta cctaagggat tatcaaacat tagtatttgt gcacaatctt ctaaataatc      4140
     ctgtaatgca ccataacata accttaccaa gtgcaccaca ttttcattca actagacaaa      4200
     atgaccacct gcgacgtgag caagcttcaa ccaaccttgg tcaaagacgc atatcattca      4260
     ttggtcctac taaatacaac acacttcccc ttgatttgaa acaaaccact agcacctcca      4320
     ttttcaaaat cagattaaaa cagcatttaa aacataagtt acacgaactg ttccaataga      4380
     atacacttaa caccgattac ataaaatagg ttatatttct ctttattagt cgagctattt      4440
     tcatttattt tagttttgtg gatcccttaa aaggaaatct tttttccact gggatttcac      4500
     cttagtatta gcagtagtta ttcttcattg cccaccaata ttagcatttc tttgtaaaac      4560
     aatgttctca gcataaattt agtttgcttt cgtcctttac attaactttt gttagctgag      4620
     catttaagga gaccactacc agggggctca attatgagct ttttggtgtg ggggtgtgat      4680
     ggagggtcct taaaaaaaaa aaaaaaaaaa aaaaaa                                4716
//
ID   Crack-6_AAe repbase;    DNA;    INV; 4588 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4588
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1222-1222 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >97%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           690..1499
FT                 /product="Crack-6_AAe_1p"
FT                 /translation="MPVNQSSVASNYKMSCGNVTTSNVILATLKKGLDSFT
FT                 DQISASQQFMSSKFDTILDDFAELCNEVRLLKRDNVELRKTVAQLERQLES
FT                 HSCTVHRQGKLLDDFSRESVSCNAIVTGIPRVPHEETAKLIEKTFSVVSPH
FT                 IDMKQVKHCERLSVTKSHHETPPIRVVFNNVDAKRKFVKAKIEYGRLRVGS
FT                 ITRCHGRADQVVSVRNELSPLKIELLNELKHSQHAIGFSYVWASTAGDILV
FT                 RFNKSSKPIVIRTRADFHKLTSNQQSKQL"
FT   CDS           1505..4411
FT                 /product="Crack-6_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYDMTMDNILKESNIFVEPPIQRSIFARESCFNMLQI
FT                 NIRGMNNIEKLDSLAIFIDNLGTPVDILIICETCIKQDRSSFYNMNGFSSI
FT                 HSCRTQSAGGLAVYVRNGIGYDIISNSTIDGYHHINLQIPMDNSVCSIHGI
FT                 YRPPDFDFVRFRNLLEEILASSNLSKPIFIFGDMNVAINRDRRDKEEYMDL
FT                 LQSYGMIVTNTNITRPESDNILDHSIARIDDITRITNYTISCELSDHNYVL
FT                 TSLKTFVASNRMRTLTKTIIKYEVVDRKFNEFLTVYDWANANPNERLVKIA
FT                 EKYIELRNANTTTKSMHVKLKKEGCPWFNYDMKVLCHARDTALKRWKRNRT
FT                 NDHLAEVLRLANKKLVAAKRKAKKHYYGQFFNAGNPKELWNRINGLLGTNC
FT                 QLREIMLHIDGREVSDAALVSNLFNEYFTSIGRLLAENLSSSNNINAHYTI
FT                 REVPNTFFLTPATSQEVSNIISNMDSSKATGYDGLPITALKHHCTVLSTII
FT                 ADAFNDSAITGIYPECLKKAIVYPVFKTGDRKLLNNYRPISVLPAVNKVFE
FT                 QLLTQRLLEFLDSNSFFYNKQYGFRKGSSTQIAVLELVDELSDTIDRHKNI
FT                 AGCLFLDLSKAFDTIDHGFLLKKLEACGVRGLPNNLLRSYLQNRKQAVIVN
FT                 GCRSSELSIEIGVPQGSNLGPLLFLIYVNDLCNLRLNGVPRLFADDTVLSY
FT                 TGRTPQEIVDKMREDLLIVSEYLENNLLSLNVAKTKFMIIRGPRTILSEHT
FT                 GIMFKNEEIEEVECFKHLGIILDCNLSWKNHIKHLVQTCAPICGMLRKLSY
FT                 FLPRHVLLKIYYAFINSRYQYASCVWASVGVNQLKALQVQQNRCLKAIYRL
FT                 PFLHPTINLYDSFNHSIVPIGALHAYQTSIVIHRIICIQDIHHNFELQNVS
FT                 HQYETRNLDRIVASNFASEIGRRRFSSIGPRIYNNLPSSVKNCEFITTFKK
FT                 NLKKYVLDHLGRYL"
XX
SQ   Sequence 4588 BP; 1428 A; 978 C; 851 G; 1327 T; 4 other;
     gttgttgtga cgctaagtga gacagtcaaa ttattgcgct cctcatcata attaaatagc        60
     tgattattta caccacgaat aagtgctaaa tatttgaaaa aatcgtgttt gtgtacctct       120
     gcaccgcatc tcgcagttwt ctaatccaat ttcgtaaaac tggatgagat atacgaacaa       180
     atagtatgat tctctgctac acctcaacga tcattgcatt cgccattctg ctgctgttgc       240
     tgctcatccc gaaataaacg tttcwtcacc cgccattcgc catccaccac ccgccaccgc       300
     cacccgctat ttgccaccca cccttcgaca gccacaaaac gccaccactg tttgccccgc       360
     cgccacctcc gctgccaaaa atattgctca tgctgcttca atataacgaa cgtttgttat       420
     cgcaagaccc gtccatgtaa cgttggatca ataaagctga cttgctgcgc tgtgtttcat       480
     ttctaccacc cctcacctcc tctgacgcta cgtccgctgc catcaacgat cgctcgattc       540
     catctaccaa catcttcaca gcagccaagg tgagcaagat acatacaata gattgttgtc       600
     aaattgttgc tcacactaga ggccacgtcg ctcaaaaaaa aaattgtaca gcgccatctg       660
     tttgtgaaaa cgtgcaccaa aactgctaga tgccagttaa tcaatccagt gttgcctcaa       720
     actataagat gagctgtggt aatgttacta catctaatgt gatattagcc acattgaaaa       780
     aggggcttga ttcatttact gaccagatat ctgcaagcca acaattcatg tcctctaaat       840
     tcgatactat tctcgatgac ttcgcggaat tgtgcaatga agttcgcttg ctgaaacgag       900
     ataatgtcga gcttaggaaa actgttgcgc aacttgaaag acaactcgaa tctcacagtt       960
     gcacggtaca tcgacaggga aaattgttgg acgacttcag tcgagagtca gtttcatgta      1020
     acgccatagt tactggaatt cccagagttc cacacgaaga aactgcaaaa ttgattgaga      1080
     aaaccttctc tgttgtttct cctcacatcg acatgaaaca agtcaaacac tgtgagagac      1140
     tgtctgttac taagagtcat cacgagactc ctccaattcg agtggttttc aacaacgttg      1200
     atgctaaacg aaaatttgtt aaagccaaaa ttgaatacgg cagactacgt gttgggtcca      1260
     ttacacgttg ccacggcaga gctgatcaag ttgtctctgt aaggaatgaa ttatctccac      1320
     tgaaaattga acttttgaat gagctaaaac attcccaaca tgccataggc ttctcctatg      1380
     tgtgggctag tactgctggc gacatcctag taaggttcaa caagtcttca aagcccatcg      1440
     tcatcaggac tcgagcagac tttcataaac tcacttcaaa tcagcaatca aagcagttgt      1500
     gaaaatgtac gacatgacca tggataacat tttaaaggaa agtaacattt ttgtcgagcc      1560
     accaattcag cgatcaattt ttgcacgtga atcctgcttt aatatgctgc agatcaatat      1620
     tcgcggcatg aataatattg aaaaacttga ttcattagcc atatttatcg ataacttggg      1680
     tactcctgtg gatatcctga taatttgcga aacgtgcatc aaacaagaca ggtcgagttt      1740
     ctacaatatg aatggattct cctctataca ctcttgtcgt actcaatctg ctggaggctt      1800
     ggctgtttat gtaaggaacg gcattggcta cgatatcata agcaactcaa ctatagatgg      1860
     ttatcaccat atcaacctac agataccaat ggacaattcc gtttgttcta ttcacggtat      1920
     atatcgtcct ccagattttg attttgttcg tttccgwaac ctcctggaag aaattttggc      1980
     ttcgtcgaac ctttccaaac caatatttat ctttggtgac atgaatgtgg caatcaaccg      2040
     cgacagacga gacaaggaag aatacatgga ccttctacaa tcatacggca tgatagttac      2100
     aaacactaac attacacgac ctgagagtga caatatcttg gatcattcta ttgcacgaat      2160
     tgatgacatc actagaataa ctaattacac cattagctgt gaacttagcg accacaacta      2220
     tgttctaaca tctttgaaaa catttgttgc cagtaaccgt atgcgaacat tgacgaagac      2280
     tatcattaag tacgaagttg tcgatagaaa attcaatgag ttcctgacag tctacgattg      2340
     ggccaatgcg aatcctaatg aaaggctggt aaaaattgca gaaaagtata ttgagcttcg      2400
     gaacgcgaat acaactacca aatctatgca cgttaaactg aaaaaagagg gatgtccatg      2460
     gtttaattat gacatgaaag tcctttgtca tgcaagggat actgcgctga agagatggaa      2520
     gagaaaccgt acgaatgatc atctcgccga agttctgaga ttagccaata aaaaacttgt      2580
     ggcagcaaag cggaaagcca aaaaacatta ttatggtcaa ttttttaatg ccggcaatcc      2640
     caaagaactt tggaatcgca tcaacggtct gctgggtacc aactgccaac tacgtgaaat      2700
     catgctgcat attgacggta gggaggtttc tgatgctgca cttgtatcta atctcttcaa      2760
     tgaatacttc acctcaattg gtagactact agctgagaat ttgtcatcat caaacaacat      2820
     taacgctcac tatactatca gagaggttcc aaatacattc ttcttgactc ctgcaacatc      2880
     gcaagaagtt tccaatatca tctctaacat ggatagttca aaagcgacag gatacgatgg      2940
     attaccaatc accgctctaa aacaccattg cacggtttta tcgacaatca tagccgatgc      3000
     cttcaatgat tcagctatta ctggaatata ccccgaatgc cttaagaaag cgattgtcta      3060
     tccagtattc aaaactggag accggaaact acttaataat tatcggccaa tatccgtgtt      3120
     accggcagtt aacaaggttt tcgaacaact gctcacccaa cgtcttctcg aatttttgga      3180
     ttctaactct ttcttctata acaagcaata cggttttcgt aaaggctcct caactcaaat      3240
     agccgtgctt gaactagtag atgagctgtc agatactatt gatcgtcata agaacattgc      3300
     tggttgtctg ttcttggatt tgtcaaaggc ttttgatacg atcgaccacg gatttcttct      3360
     gaaaaaactt gaggcgtgtg gagttcgagg tcttcctaac aacttgctaa ggagttacct      3420
     gcagaatagg aaacaagctg tcattgttaa tggatgtcgg agtagtgaac ttagtattga      3480
     aatcggggta ccccagggaa gcaacctcgg accgctgttg tttcttattt atgttaacga      3540
     tctgtgtaac ttacggctta acggtgttcc tagactattt gctgatgata cagttctctc      3600
     ttatactggg cggactcctc aagaaatagt tgataagatg agagaggatc ttcttattgt      3660
     aagtgaatac ctagaaaaca atctgctatc actaaatgtt gcgaaaacta aatttatgat      3720
     aataagagga ccacgcacta ttctctcgga acatacaggt atcatgttta agaacgagga      3780
     gattgaagaa gttgaatgtt tcaaacattt aggtatcatt ctcgattgta acctgtcatg      3840
     gaaaaatcac atcaaacatc tagtccaaac ttgtgctccg atttgtggca tgcttaggaa      3900
     actatcctac tttcttccta gacacgtttt attaaaaata tattatgctt ttataaatag      3960
     tcgttaccaa tatgcatcat gtgtatgggc ctctgtaggt gtcaatcagt taaaagcatt      4020
     gcaggtgcaa caaaacaggt gcctaaaagc catatatcgc cttccatttc tacatcctac      4080
     gataaatcta tatgattctt tcaaccacag tatagttcca atcggtgctt tacatgcata      4140
     tcaaacctca attgtaatcc atagaattat ttgtatccaa gatatacatc acaattttga      4200
     gttacagaat gtatcacatc agtacgaaac ccggaatttg gaccgtatag ttgcctcgaa      4260
     ttttgcgtct gagataggta gaagaagatt ttcgtccatt ggaccwcgca tttataacaa      4320
     tttgcctagt agcgtaaaaa actgtgaatt tattacaaca tttaagaaga atttgaaaaa      4380
     gtatgtgctt gatcatctag gtagatatct ttaagtagac gaattatatc aattagcatg      4440
     taagaattat tataacaaca acaacaacac tctcggtact tttgagactt tttagaggag      4500
     ctttgagttc attaaagtct taaaagtgca gtgccgctat gtattgcaat agttatgctt      4560
     aataaatttg aatttgaatt tgaaaaaa                                         4588
//
ID   Crack-6_CQ  repbase;    DNA;    INV; 1957 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1957
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 37-37 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1592
FT                 /product="Crack-6_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="XQXTFLLLPTDQFEIITLIDSFDNNTSCGXDKISSSI
FT                 LKKVKLIIAPILTEIFNLCMLNGCYPDKLKIAKVTPVYKSGSASLFNNYRP
FT                 ISVLSLLXXIFEKILFTRLNNFLCLNKFFCAQQYGFRHKSSTKNAVIDLVN
FT                 KIQTHLDQKDDVLGLFLDLSKAFDTVDHKILLTKLNFAGVRGVALELFKXY
FT                 LXNRVQFVSLDGIDSLTALINVGVPQGSVLGPLFFLVYLNDLALLPLKGDL
FT                 KLFADDSSLFYFNKSMVINDINLNNDLRLLTDYFRLNKLTLNINKSNIINI
FT                 KNSNRSTVNPLTLTRTNFADIKIVDECKYLGVILDNKLNWSSHINNLLNKL
FT                 NQIIGIIYKIKHKLTANVLLIIYHSLFNSHLSYITSVWGNSCNILINKLQI
FT                 AQNKILRIIYKKPLRSHSADLYNINKNIIPVRAIYVIQTCCFIYLCLHEQT
FT                 HSNTKFKLSNHQHFTRSHNLLDRPNISTLAGERCISFKGAQLYNYFWNRFG
FT                 DCQSVSIFKNKLLSFLNEPAVIEHILKSFDFLVT"
XX
SQ   Sequence 1957 BP; 636 A; 329 C; 253 G; 728 T; 11 other;
     aawgccaama aacgttttta ttgctaccaa ctgaccagtt tgagataatc accctaatcg        60
     attcatttga taataataca agttgtggtt wtgataaaat ttcttcttcc attttgaaaa       120
     aagttaagtt aataatwgca ccaatcctca ctgaaatatt caacttatgt atgttgaacg       180
     gctgttaccc tgataaactt aaaatwgcta aagtcactcc cgtttacaaa tctggttctg       240
     cttcattgtt taataattat agacctatat cagttttatc cttgctcmat amaatttttg       300
     aaaaaatcct gttcactaga ctaaataact ttttgtgctt aaataagttc ttttgtgctc       360
     agcaatacgg tttcagacat aaatcctcta ctaaaaatgc tgtcattgat cttgttaaca       420
     aaattcaaac tcacttagat cagaaagacg atgttttggg gctattttta gacttatcaa       480
     aagcgttcga cactgttgat cacaaaattt tgctaacaaa acttaacttt gcaggtgtaa       540
     gaggggttgc attagaattg ttcaaawgtt atcttwmtaa tagggtccaa tttgttagtt       600
     tagatggtat tgatagttta acagctttga ttaatgtagg ggttcctcag ggttccgtct       660
     tgggtccact tttcttctta gtttacttga atgacttagc gttactgcct cttaaaggtg       720
     atttaaaatt gtttgctgat gattcatctc ttttctactt taacaaatct atggtaatca       780
     atgatataaa tttgaataat gatcttcgat tgttaactga ctattttcga ttaaacaagc       840
     tcacactaaa cataaataaa tccaacataa tcaatattaa aaattcgaat cgctcgacgg       900
     tgaatccatt aactttaact agaactaatt ttgctgatat aaaaatagta gacgaatgta       960
     aatatcttgg tgtcatttta gacaataaat tgaattggtc gtcacatatt aataatttat      1020
     tgaacaaact caaccagatt attggaatta tctataaaat taaacacaaa ttaactgcta      1080
     atgtactttt gataatttat cattcactat ttaattctca cttatcttac ataacttcag      1140
     tttggggaaa ctcctgtaat attttgatta acaaacttca aatagcccaa aataaaatct      1200
     taagaataat ttataaaaaa ccactgcgaa gtcactctgc cgatttgtac aacattaaca      1260
     aaaacatcat tcctgtcaga gctatttacg taattcaaac atgttgcttc atttatttat      1320
     gtttacatga acaaactcac agtaatacaa aattcaaatt atctaaccat caacacttta      1380
     ccagaagcca taatttatta gaccgaccca atatttcaac attagccggc gaaagatgca      1440
     tatctttcaa aggtgctcaa ttatataatt atttttggaa tagatttggt gattgtcaaa      1500
     gcgtatcaat atttaaaaac aaattgctct cttttttgaa tgaacccgct gttattgaac      1560
     acatccttaa atcctttgat tttcttgtta catagtagac tattttgttt tccaattttc      1620
     tttttgtttt ttttttctct tttttttctt tcttttttca cttttgcttc cttctaaaac      1680
     tcagtttaaa aagttagttt tccgacacaa ttatctttwt tctataattt tgtctttatc      1740
     gccataatct atgcactttt ttatatcatt tcagatttct cttgccagga tcaaccaaac      1800
     tccttcacag gtggaaacca atggagtttg accggatatt taaaagttaa ttgtaaacac      1860
     taaaatttat tgtatattgt attaaaacga tgtaggtttt tggtgctact gctttggtgg      1920
     cttttcctac cgaataaaaa atcaatcaat caatcaa                               1957
//
ID   Crack-7_AAe repbase;    DNA;    INV; 4626 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4626
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1223-1223 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
CC   Closely related to Crack elements in Culex pipiens (Crack-1_CP
CC   to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           395..1393
FT                 /product="Crack-7_AAe_1p"
FT                 /translation="MESESFTCKICERTETASDTNPVVTCDCCLNTFHVKC
FT                 KKISKAALNSLSGAPYFCSPKCSEIFRRFTAFTSNKKLCEADKEYITATIK
FT                 DALAEKLDSVIDEIRNLQIGQDVIAKEQDDLKERCSHLENAVSDLEDEVEF
FT                 LHRDRISNNVMFFGVPLMASENTTDVVQAIINRLTYAQPQLITRNDILSVF
FT                 RFPQKSKNSSAPPIRVVFKSCDCKGQFMQTARQIQNLASTDVDATWTVNGA
FT                 GSKIVIREEATKLSQHIYKQLKSKQKDLGLQYVWIGRNSVVLVKKDDSSST
FT                 AKIKNWNDLDKLQGSLLKETNKRTASEISPQQDHIPKKYCS"
FT   CDS           1489..4398
FT                 /product="Crack-7_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNSKIFNFKFSDLDEFNLNTNFNALSNKENSMVILQQ
FT                 NMQGMNNFSKFDNFSLFLNELQCNIDIIVLTETWINDENEKYYKIPGFNKV
FT                 NSSRVDSRGGGLMIFFHSRYEIDVIDVDNSRFSFQFIHIRIKLSHAEHFHV
FT                 CAVYRPPATNMNEFRIFLESIMEENVRLPTIILGDINIAVNKSNTIVTDYK
FT                 NLLSSCSFEVTNTFETRPASQNILDHVICNSSNFIEIQNFTIFNDLSDHLP
FT                 VLSKFTLKTKLQIVKLTKNLLNYRTFHREFLVFLENLSFDASPNEILIDIM
FT                 NKYNELRSIHTRTIELQARVKDNAAPWITVDVWKLMQIKNKLFRKLKRCPN
FT                 DNHTKDLLKHVNKKLHFAKNIAKSNFYKALFSDGDSKKKWNNINKLLGRGG
FT                 KNKQHLSLTTNGLLINDPLQVATEFNNYFSRIGSNLANNLRSERNYNKYRT
FT                 ITPVQQSIFLDPTSVVEIKKLINDLSPNKCAGPDNVSVSDVKKYSEIFAPI
FT                 LTRIFNEVLHSGEYPSCLKLSRVIPVFKGGDPQDSSNYRPISTISVFSKIL
FT                 EKLLTTRITSFMNHNNVFYCNQFGFRKGSSTETACIESVDDILRAFDSKNI
FT                 VGGLFIDLRKAFDTLDHNILKSKLGLLGIRGIASDLLNSYLSSRSQYVEIL
FT                 GQRSSACPVTVGVPQGSSLGPLLFLLYINDMGNLPLKGKLRLFADDAASFY
FT                 VGRNVSDIRGLMQADLNILNDFFKQNVLSMNVSKTKSVVFKSQHNRISTDL
FT                 QLHLEQIPVEQVKEYKYLGLILDETLSWRAHIEHLMKKLSPLCGILRKISY
FT                 FVPVQVLLKIYFAHLHSRLQYLLSIWGSAPKTTIRKLQIIQNKALRNVYKL
FT                 PYSFSKSQLYMEKAKNILPLLGLHEYKQIVYIYKITKITGTHSNQIIPRPN
FT                 HSHYTRQSNDFQRHRIRTEYGRKRITYAGITLYNNLPDDIKNLPNMGLFTK
FT                 RLKQYLSENLMRYIQ"
XX
SQ   Sequence 4626 BP; 1600 A; 807 C; 821 G; 1397 T; 1 other;
     cactgttaag tgaacaagtc acagtaaaac ggtggataga ttttatcaaa aattcaacgt        60
     ttttcgaagt gaatactctt caaactacct gcaaaagttt aatttgccag actggtttgg       120
     cttaaaagtg aaatcaacgt ttgatgttca ggcaaagtgt tgcaatcatc atttaatcaa       180
     tagactaaat gagtagcttc tatataatgt gctagagatg ttaacagtta tgatgatgta       240
     aaactgtgaa caacctgatc caccgttagc accaatagct cgacacgggc cgataagatc       300
     gtttctactt attgagatca ctacctaaac tgttgttgtt gttgctgtcg ctggggtttc       360
     tgctgttgtt gtacgtgttt gctgctggga agtcatggaa tcggaatcgt tcacctgtaa       420
     gatctgcgag aggactgaaa cagcctctga caccaaccct gtggtcacat gtgactgttg       480
     tctcaacacc ttccatgtga aatgcaaaaa aatcagcaag gctgcgctga atagcctgtc       540
     tggagcgccg tacttttgtt ccccgaagtg cagtgaaata tttcgacggt tcacagcttt       600
     cacctctaac aaaaagttgt gtgaagccga caaggaatac atcacagcga ctataaaaga       660
     tgctctggct gaaaaactcg attctgttat tgacgaaata cgcaatctcc aaatcggtca       720
     ggatgtaata gcaaaggaac aggatgacct caaggaacgt tgttcgcatc tggagaatgc       780
     agtcagcgat ctggaagatg aagtggaatt tttgcatcga gataggatat caaataacgt       840
     catgttcttc ggagtcccat tgatggccag cgaaaacacc actgacgttg ttcaagcaat       900
     cattaaccga ttgacctatg cgcaaccaca gttaatcacc agaaacgata tcctctccgt       960
     gtttcgtttt cctcagaaaa gcaaaaactc tagtgcacct cctatcagag tcgtctttaa      1020
     aagctgtgac tgtaaagggc aattcatgca aactgcgcgt caaattcaga acttggcgtc      1080
     aactgacgtg gatgcaactt ggacagttaa tggggcagga tccaaaattg ttattcgaga      1140
     ggaagcaaca aaactaagtc aacatatcta caagcagcta aaatccaagc aaaaggatct      1200
     gggtcttcag tacgtttgga ttggtcgcaa cagcgttgta ctggttaaga aagatgacag      1260
     ctcatctact gcgaaaatca aaaactggaa tgacctcgat aaacttcagg gctcactact      1320
     gaaagaaaca aacaaaagaa ctgcaagtga gatcagtcct cagcaagatc atattccaaa      1380
     gaaatattgc tcataaatga taattgtctt tctcaagatg tctattcaca tttacttagt      1440
     tttagagatt tcggtaggat taggtttgaa ctagaaaata tcttacttat gaattcgaaa      1500
     atatttaatt ttaaattttc agatctagat gaatttaatt taaataccaa tttcaatgca      1560
     ttatctaaca aggaaaattc tatggtaatt cttcaacaaa atatgcaagg aatgaataat      1620
     ttctcaaagt tcgataactt ctctctgttt cttaatgaat tacagtgcaa tattgatatt      1680
     atagtattaa ctgaaacatg gattaatgat gaaaatgaaa aatattataa aatccctggt      1740
     tttaataaag ttaattcaag tagggtagat agtcgaggtg gtgggctaat gatatttttc      1800
     cattcaagat atgaaattga tgtgattgat gtagataact ctcgatttag ttttcagttc      1860
     attcatatcc gcattaaatt atcacatgct gaacatttcc atgtttgtgc cgtatatcgt      1920
     ccaccagcta caaatatgaa tgaatttcga atatttttgg aatctattat ggaagaaaat      1980
     gttagattgc ctaccattat actcggtgat ataaatattg cagttaataa atcgaataca      2040
     attgttactg attacaaaaa tctactatca tcttgctcgt ttgaagtgac caatacattt      2100
     gaaactagac cggccagcca aaatatctta gatcatgtta tctgtaattc tagtaatttt      2160
     attgaaatac aaaatttcac aatattcaat gatttaagtg atcatttacc tgttttatca      2220
     aagtttacat tgaaaaccaa attacaaatt gttaaattaa ctaaaaattt gctgaactat      2280
     agaacttttc atagggagtt cctcgtattt ttagaaaatt tgtcattcga cgcaagcccg      2340
     aatgaaatac tcatagatat catgaataag tataatgaat tgcgtagtat acatactaga      2400
     actatcgaat tgcaagctag agttaaggat aatgctgctc catggattac agttgatgtt      2460
     tggaagctaa tgcaaataaa aaataaactt tttcgaaagc tgaaacgttg tccgaacgat      2520
     aaccacacaa aggatcttct taaacacgta aacaaaaaat tgcatttcgc aaaaaacata      2580
     gcaaaatcta atttttataa agcattgttt agtgatggtg attcaaaaaa aaagtggaat      2640
     aatataaaca aattgcttgg taggggagga aaaaacaagc aacatctgtc gcttactacc      2700
     aatggcttat tgataaatga ccctctccaa gttgcaacag aatttaataa ctatttctct      2760
     agaatcggat ctaatttagc aaacaattta cgtagcgaaa gaaattataa caaatatcga      2820
     acaatcacgc cagttcagca atcaatattt ttagatccaa cttctgtggt tgagattaag      2880
     aaattgatca acgatttatc accaaacaaa tgtgcaggcc ctgacaacgt ttccgtgtct      2940
     gatgtcaaga aatattctga aatatttgca ccaattttga caagaatctt taatgaagtt      3000
     ctacacagtg gagagtatcc cagttgttta aaactttcaa gagtgattcc cgtgttcaag      3060
     ggaggagacc cacaggactc cagtaattac agaccaattt ctaccatttc agtatttagt      3120
     aaaatcctag aaaaactttt aactacacga ataaccagtt tcatgaatca caacaacgta      3180
     ttttactgca atcaatttgg gtttaggaaa ggctctagta ccgaaaccgc ttgcatagaa      3240
     tcagttgacg atatccttcg tgcttttgac tctaaaaata ttgtaggtgg gttgttcatt      3300
     gatctacgca aagcatttga cacgcttgac cataacattc tcaaatctaa actaggactg      3360
     ctgggaatcc gcggaatagc tagcgatctg ttgaatagct atttaagctc taggtcacag      3420
     tatgttgaaa ttcttggcca gcgtagttca gcatgtccag taacagttgg tgtacctcag      3480
     ggaagcagct taggcccact gttgtttctg ttgtatatta acgacatggg caatcttcct      3540
     ttaaaaggga aactgagatt atttgccgat gatgctgcgt ccttctatgt tggtagaaat      3600
     gtttcagata taaggggtct aatgcaggca gatttgaata ttcttaatga cttttttaaa      3660
     caaaatgtcc tatcaatgaa tgtttctaaa acaaaatcag ttgtattcaa atctcaacat      3720
     aatcgcattt ccactgattt acagttgcat ttagaacaga taccagtaga acaagttaaa      3780
     gaatataaat atcttgggct aattttggac gaaacgttgt catggcgagc acacatagaa      3840
     cacctaatga aaaagttgtc cccattatgc ggcattctgc gtaaaatctc gtattttgtt      3900
     ccagtacaag ttttgttgaa gatatatttt gcmcacttac actctagatt acaatattta      3960
     cttagtattt ggggatctgc tccaaaaaca actatacgca aacttcaaat tattcaaaac      4020
     aaggcgttaa gaaatgttta taaattacct tacagctttt caaaatctca actgtacatg      4080
     gaaaaagcaa aaaatatact ccctttgctc gggttacacg aatacaaaca aattgtttac      4140
     atttataaaa ttactaaaat tacaggaact cattcgaatc aaataattcc taggccaaat      4200
     catagccatt atactaggca gtctaacgac ttccaaaggc atagaattag aacagaatat      4260
     ggaaggaaaa gaattacgta tgctggaatt accctatata ataatttgcc ggatgatata      4320
     aaaaatttgc caaatatggg attgtttaca aaaagattaa aacaatactt aagtgaaaat      4380
     ttaatgcggt acattcaata atttattaaa gattaacaaa taagttctaa ttacagtgtt      4440
     gctacatatt aaagaaatca ttagcctacc cttcaaagaa caaaatgttc attgggttag      4500
     ctagtaggaa taaaattctt tgtatgtatt attgaaaaga caagcaggtt ttgtgcctca      4560
     aggagaagta acatctgaga cagttacact ccttggggtt tttccctgct tcaataaata      4620
     aataaa                                                                 4626
//
ID   Crack-7_CQ  repbase;    DNA;    INV; 4035 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4035
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 38-38 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           7..972
FT                 /product="Crack-7_CQ_1p"
FT                 /translation="MATETAKVCVKCKKNINARHGKPLQCDGKCRQVWHKA
FT                 CTSVSDEXYPVPDKFWFCAPCKETRNRNRRSTINMADRTPSTPSTAKAGAA
FT                 SSTTEAAIVRIESKLDQLIGWQKDVITEIRGIQNTLEELRTTTETLMDEQQ
FT                 QLRSDNFELRRQLELNEIEIDQLRQEKLXKTLEISNVPVAEDEDLFDKVTQ
FT                 ICHGIGVVLDISEVKEIFRAPTYQSQKSQIPPPIQLKLSSKKKRDELLAKK
FT                 REKKELTTAILDKGTDKPVNIYISEVLTKRNRYLFKLARDLRRSDRIKFAW
FT                 FRDGRLLVRKTEKAKVKGIRSVAALDEFTK"
FT   CDS           959..3829
FT                 /product="Crack-7_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSSQNNPNLQLPFQPSTKTINTIKQLKFNSENSLKLF
FT                 YFNARSLNDKLTELEFLLDEANCRMDALMITETWSRPETEQSMCLSNYQCF
FT                 FASRSTRRGGGSAIFIHNDIHCKPIHNYCDEHNSFIAVEVGDREKTVLVCV
FT                 YRPPEPLSSSLDCFFQHLDTFLAAQACRTTIVTGDFNLDLLTTTTAVQRYT
FT                 NIVLSNGFIFCGHRPTRFEACLDHILTNNTELQVTVQQLQYNLFDHDAMFI
FT                 EATRTIDCISSGRVSFTKTDVNKLRLYLQQHPPNTSMQFSVEENYNVLLSQ
FT                 LRSGIEASSTQVRSRGTKQTHSKPWFDNELKQCIRTKNYWYGKHRQNIADH
FT                 VTRDTYHRWANTVTSLKRTKRKHYYGAKFERQQSSITGTWDVVREVLGSRR
FT                 KSGKGISSRFSSTDEKQRCVEDANTYFAAAGKHLAENIPYTAMQPINPQTD
FT                 QLLVLEPVPRTIVLQTIASLPASKSTGYDGCQPNFFKACGEILADSVADVV
FT                 NTSIRQSLVPNTLKLSKVVPIPKTPAARNVSEFRPINIPSVTDKVLQKIVN
FT                 KQLTEHLERNHLLSPRQYGFRPKSNTQSALFDAVVEIQRNCDRKLKVAAVF
FT                 LDLSKAFDTCEKRILLRSLSELGVNGQSLRWFESFLGERQQYVCDNGLNSE
FT                 PLFVDYGVVQGSIVGPTLFNCYVNNLKDLPLHGTLFMYADDIVLVYAASTY
FT                 EELQSRMNEDLCHLCRWMNQHKLTVNIPKTKYMLFNAPSWTRLDVVYNGEC
FT                 IDYVDAFKYLGVWLDSGLKWTVHIEKLNKTLAQVAGVFKRVSSVLPTQTKR
FT                 MLYFSLFYSHLIYGIAVWGTAGSTALNLLQTTQNKAIKNLFGYHYRTSTAL
FT                 IHSNNRFLSVSSTYTAVACCHVHKIQRNCIHTNTVLSRGEDRHQHYTRRRG
FT                 DFTASRINTTTFGQNSALHRATLMYNALQDDMKTLHPARFKKVLQNQLLEE
FT                 QF"
XX
SQ   Sequence 4035 BP; 1210 A; 1037 C; 909 G; 874 T; 5 other;
     ttagcgatgg cgaccgaaac cgctaaagtc tgcgttaagt gcaagaaaaa tatcaacgca        60
     cggcatggaa agccgctgca gtgcgacgga aagtgcagac aggtgtggca caaggcgtgt       120
     acaagtgtct ccgatgaasa atatcccgtt cctgacaaat tctggttttg cgctccgtgc       180
     aaggagaccc gaaaccgcaa cagaagaagc acgataaaca tggccgaccg aacaccgtct       240
     acaccatcca cggcaaaggc tggagctgca tcatccacca ctgaagctgc gatcgtccgg       300
     atcgaatcca aactggacca gctcatcggc tggcagaagg atgtcataac ggagatccgc       360
     ggcatacaaa acacgctaga agaattgcgg acaaccacgg aaacgctgat ggatgagcaa       420
     cagcagcttc gttccgacaa cttcgagttg cgaagacagc tggagttgaa cgaaatcgaa       480
     attgaccaac tgaggcagga aaagctgsgc aagacgttgg agatttcgaa cgtgcctgtt       540
     gccgaagatg aagacctctt tgacaaagtc actcagattt gtcatgggat cggagtcgta       600
     ctggatatca gcgaggtgaa ggaaatcttc agggctccca cgtaccagtc ccagaagtcg       660
     caaattcckc cacccatcca gctgaagctt agcagtaaga agaaaagaga cgaactactg       720
     gcgaaaaaga gagaaaagaa ggagttaact acggcaatcc tggacaaggg aaccgataaa       780
     ccggtcaaca tttacatcag cgaagtgctg accaagcgga atcggtacct gttcaagctg       840
     gcgagagatt tgagacgaag cgacagaatt aagtttgctt ggttcagaga tggcaggttg       900
     ttggttagaa aaaccgagaa agccaaggtg aaggggatca gatccgtagc cgcactagat       960
     gagttcacaa aataatccta acctccaact gcccttccaa ccaagcacaa aaacaatcaa      1020
     caccatcaaa caactcaagt tcaacagcga aaacagtcta aaactgttct atttcaacgc      1080
     gagaagtctc aacgacaaac tcaccgagtt ggagttcctg ctcgacgaag ccaactgtcg      1140
     gatggatgcc cttatgatca ccgaaacctg gtcacgaccc gagacggagc aatctatgtg      1200
     tctcagcaac tatcaatgct tcttcgcttc gagatcaacg agacgtggcg gtggttcagc      1260
     aatcttcatt cacaacgata tacactgcaa accgatacac aactactgcg acgaacacaa      1320
     cagtttcatt gctgttgaag ttggtgaccg tgaaaaaact gtcctggttt gtgtgtatcg      1380
     cccacctgaa ccgctgtcct cctcgctgga ttgctttttt caacatctgg acacctttct      1440
     cgcggcgcaa gcgtgccgaa caacaatcgt caccggggac ttcaacctgg atctgctcac      1500
     aacaacaact gctgtccaaa ggtacaccaa catcgtgctg tcaaatgggt ttattttctg      1560
     cggtcaccgt ccaactcgtt tcgaagcctg tctggaccac attctaacga acaacaccga      1620
     gctacaagta actgttcaac agttgcagta caacttgttt gaccacgatg cgatgtttat      1680
     tgaagcaacc agaacgatcg actgtatatc ttcgggtagg gtaagcttca ccaagaccga      1740
     tgtcaacaaa cttcgtctgt acctacagca gcaccctccc aacacaagca tgcagttctc      1800
     ggtagaagaa aactacaacg ttctactgtc gcagctacgc tcggggatag aagcttcctc      1860
     aacacaagtc cgttcacggg gaaccaaaca aacacactca aagccctggt ttgacaacga      1920
     gttgaaacaa tgcattcgaa ccaagaacta ctggtatggg aaacatcgcc agaacatcgc      1980
     tgaccacgtc acccgagaca cataccaccg ctgggccaac acagtcacga gtttgaaacg      2040
     tacgaaaaga aagcattatt atggtgctaa attcgaacgt caacaaagca gcataactgg      2100
     cacctgggac gtcgtccgag aagttttggg ctccagacgg aaaagcggca aggggatctc      2160
     cagccggttt agcagtacgg acgaaaagca gcgttgcgtg gaagatgcaa acacctattt      2220
     cgctgcagcg ggtaagcatc tcgctgaaaa cattccatac acagccatgc aacccattaa      2280
     cccccagaca gaccaattgt tggtcctgga accagttcca cgcacgatcg ttctgcaaac      2340
     gatagccagc ctaccagcct caaaatcgac cgggtatgac ggctgccaac cgaacttctt      2400
     taaagcttgc ggggaaatcc tcgctgacag tgttgctgac gtcgtgaaca cctcgattcg      2460
     gcagtcgctc gtccccaaca ctcttaagct gtccaaggta gttccgatcc cgaaaacacc      2520
     agctgcaaga aatgtctctg aattccgccc tatcaacatt ccaagcgtga ccgacaaagt      2580
     tttgcagaaa atcgtgaaca agcaactcac cgagcacctt gaaagaaacc acctgctatc      2640
     tcctcgtcag tacggcttta ggccgaaatc caacacacaa tcggctttat ttgatgcggt      2700
     ggtcgaaata cagaggaact gcgatcgaaa actcaaggtg gctgcggtgt tcctcgatct      2760
     gtccaaagct ttcgacacct gtgagaagcg gattcttctg cgaagtctca gcgaacttgg      2820
     tgtgaatgga cagtccctgc gatggtttga aagtttcctg ggggaacgtc aacaatacgt      2880
     ttgcgacaac ggtctaaaca gcgaaccact atttgttgac tacggtgtag tccaggggag      2940
     cattgtcgga ccgacgctct tcaattgtta tgtcaacaac ctcaaggatc ttccgctaca      3000
     tggaactctt ttcatgtatg ctgacgacat cgtgctcgtg tatgctgcct caacatacga      3060
     agagctgcaa agcagaatga acgaggacct ctgtcatttg tgtcgctgga tgaatcaaca      3120
     taagttgact gtgaacattc caaaaaccaa gtacatgctg ttcaacgccc caagctggac      3180
     cagactcgat gttgtgtaca acggcgagtg catcgactat gtcgacgcgt tcaagtacct      3240
     aggagtatgg ctggacagcg gtttgaagtg gaccgtgcac atcgagaagc tgaataaaac      3300
     actggcacag gtagcgggtg tcttcaagag ggtctcctcc gttctaccaa cccagacgaa      3360
     acggatgctc tacttttcct tgttctatag tcatcttatc tacggcatag cagtttgggg      3420
     aacagctggw agcactgcac tcaacctgct gcaaaccacg cagaacaagg ccatcaagaa      3480
     cctgtttggc taccactacc gcacatcgac agctctaata cactccaaca accggttctt      3540
     aagcgtgagt agcacttaca ccgctgttgc ttgctgccac gtgcacaaaa tccagcgaaa      3600
     ttgcatccac accaacactg tcctgagcag aggagaggac cgccatcaac actacaccag      3660
     aagaagggga gacttcacag ctagcagaat caacaccacg acgtttggcc aaaattctgc      3720
     gcttcacagg gcgaccttga tgtacaacgc actccaagac gacatgaaaa cgctacatcc      3780
     tgctcgtttc aagaaagttc tacaaaacca actccttgag gaacagtttt agattgttaa      3840
     cacwttaaat cttttttttc gtctctattt tcgttttgaa attgtataaa ttagttgttc      3900
     ttttttttgc actctatttg taactgtaaa tcttactaaa atgtactgta cggtaaaact      3960
     agtctgccac taagagccaa aggctcactg gcaaataaaa cgattaaact actaaaaaaa      4020
     aaaaaaaaaa aaaaa                                                       4035
//
ID   Crack-8_AAe repbase;    DNA;    INV; 5385 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5385
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1224-1224 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 22 sequences with >97%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           991..2061
FT                 /product="Crack-8_AAe_1p"
FT                 /translation="MTDDLDNDMYCVECKKKEDDINKLATCLYCFSSAHYK
FT                 CRNIVGFAVRKIKENLYFCSPKCSEIYKKIMEMQNERTTMINELKFELKKT
FT                 VTNVVSAQLQDVKVEVNTIVKAIEESQEFLSSKFDGIVSDVQHLKKDNDRL
FT                 KSEVADLQKSHTSLTTLVHKLEINCDKTNKESLSNNAVILGIPMHANECVP
FT                 ELVSKVAECIGADFESDSIISASRVSVSSSALNKLVPIRIVFKDNAVKESF
FT                 FSKKREFGKLLSSSIDQSMVMNGKPTNIAIRDELTPLSLQMLNELRSLQNK
FT                 LNLKYVWAGRDGIILVKKDEQSKPYVIRDRNDLACFVNESASNSSSHVTPS
FT                 PKRKRSERQDKHFM"
FT   CDS           2072..5011
FT                 /product="Crack-8_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MCSFLCISFYYFLFKMALVDNFSHNNIDEFNQSIHTV
FT                 ESNTNYLRIFQWNIRGMNDLAKFDTILETLDQCNVPIDVIVIGETWVKEEH
FT                 KQLYYIPGFNSVFSCRDNSNGGLAMFIRTDITFTPVRNVHSDGFHHISVEL
FT                 AINGRMYDVHGFYRPPSFDVNVFMNKLEDCLDNSNHNRSCFFVGDVNIPIN
FT                 AKNNNVVVKYMSLLESYGFACTNTMPTRPISMNILDHVVCRLNDIQNSRND
FT                 TISTCESDHSMIIASFKLADKREKITISKTIVDHRKIAVEFNNFLGSVCEV
FT                 TDVNLCFENIVSTYKNLLVKYSKTITKNVSTKNSFCPWMNFNVWSLIKLKN
FT                 NYIKRVKRNPQDIHLKDLLKHVSNKVIIAKKQCKKLYFDNILNNTPHSKLW
FT                 KHINNIFGKDAKTDKITLIEDGAKITDDQQISEIFNNYFSSIGQKLADSIQ
FT                 VDAGVNPLSNVRRVSSSIFLNPATANEVTMIINDLERKKSPGPDKINVDLI
FT                 KSNSDHFSRILSDCFNRIIETGSYPNCLKIARVIPILKSGNVCDTSNYRPI
FT                 STLSIFNKILEKLLINRFIPFLKQHNVLYSFQYGFRQGSSTATATVELLDD
FT                 IIKGIDEKQIVGALFLDLRKAFDTLNHAILLDKLEAYGIRGIANEIVRSYL
FT                 QDRKQFVTIGDSQSSLKSLGVGVPQGSNIGPLLFLLYVNDLNRLQLKGTPR
FT                 LFADDTALFYPHLDADAIVEHMTEDLSILSQYFSSNLLSLNVMKTKYMMFH
FT                 SSRKIFQQRNQVLLNSSCIEQVSSFKYLGLMLDSTLSWANHIKNVEKKVSS
FT                 LCGIMRRVSHFVSRRILLNFYFAHIHSRLSYLIIAWGRASKSSLKKLQTLQ
FT                 NRCLKTIFSKPFLFPTLQLYSDVSHNILPIHSLCKIQTLIFVHDTLHNNLF
FT                 HHNIQLPSISHGYRTRRTHNLHQNRALTMFGQKRISIIGPXLYNQLPDYLK
FT                 QISDRNSFKQKLKQYLKLNLHDILG"
XX
SQ   Sequence 5385 BP; 1696 A; 933 C; 985 G; 1770 T; 1 other;
     ctggcagcac tgtttctggt agctggttct attgtgctat attgtgaatt tcatttcatt        60
     aattagtagt gataaattcg attttaattt gttatttttg tcaacaagta gatattagtg       120
     ccggttcttt tataccatat tcgagtaata cgagttttgt gctcacatga acgtgaaaaa       180
     ttgaattttt aatccgttgt gatcatcagt tgtctttgtt ctcttcaatt ggctatttat       240
     attgatgaac gtatttcgtg ttggtactgt gctggtaaac tgtgatctga gtcactcact       300
     atttgtctaa gtggcagtgc ttagttccgt gagacgaaag tgcaagagtt cttgtttgat       360
     ttgtttaggt ggatctagta cgccctccag tagcacacac tcgtggtttc gcttgtttat       420
     ggcaagggcc attgctgagt gcatctatat ccatagcgtg taggtaagca agttggtcgc       480
     gatctagtac tgcagaattt ggcgaagttg gagaaatcca tcagtagcac actgtatagt       540
     ggtttcgctt gtttacggca agggccatcg tcgcagttta ctcctatttt caaatagcga       600
     gtaggtatgc atgtggttgc ggtataggat tgcagaattc ggtgaagttg ggaagaacga       660
     tttgatgaat gaacgactcc tcttgcgcaa gtagatttat gtgaaccttg ccactctggg       720
     cgaatctttg agagtcatac atcaccgctt atcgtatgct ttgcttatat ttattatcca       780
     tgcgaatagt tctcattttt cggttgtatt gaagggtctc agtaattgat tttaatctgt       840
     tttaacgtgt gcacgcttat atttactgat atgtgtattt tttacctgta tataatttct       900
     gctgtgttgt agtttaatta aattcgttta tttattttta ttttcgttat ttttatttat       960
     tttttcttgt gtcaccagtg tagttcaaga atgacggatg atctagacaa cgatatgtat      1020
     tgcgttgaat gcaaaaagaa ggaagatgac attaacaaac ttgcaacatg cctgtattgc      1080
     ttttccagcg cgcattataa atgccgcaac atagttggtt ttgctgttcg taagatcaaa      1140
     gaaaatttgt acttttgctc gccgaaatgt tctgaaatct acaaaaaaat catggaaatg      1200
     caaaatgaac gcacaacaat gattaatgag ctgaaatttg aattaaaaaa aacagtcacc      1260
     aacgttgtat ccgctcagct ccaagatgta aaagttgaag ttaatacgat tgtcaaagcc      1320
     attgaagaat cccaagaatt tctatcctcg aaattcgatg gtattgtgtc cgatgttcag      1380
     cacttgaaaa aagataatga tcgtttgaag tctgaggttg cagatttaca gaagtcgcat      1440
     acttcattga cgacccttgt tcataagttg gaaatcaatt gcgataagac caacaaggag      1500
     tccttatcga acaacgcggt tattcttggc attccaatgc atgccaatga atgtgtacct      1560
     gaattggtct ccaaagtagc cgaatgcatc ggagctgatt ttgaatcaga ttccataata      1620
     tctgcttctc gagtttctgt ctctagttct gctctaaaca aacttgtgcc tattcgaatc      1680
     gtttttaaag ataatgctgt gaaggaatcg ttcttttcaa aaaagagaga gtttggaaag      1740
     cttttgtcat cttccattga ccagtcaatg gtaatgaacg gaaagccaac gaatattgct      1800
     attcgggatg aattgacacc actttcgcta caaatgctta atgaattgag gagtttgcaa      1860
     aataaactaa atttaaaata cgtctgggct ggaagggacg gaataattct ggttaaaaaa      1920
     gatgagcagt caaaaccata cgttattagg gataggaatg acctggcttg tttcgtgaat      1980
     gagagcgcat ccaattcatc ttcgcacgta actccatctc ctaagcgcaa aagaagcgag      2040
     agacaggata aacattttat gtgagttcta tatgtgtagc tttttatgta tttcttttta      2100
     ttacttctta tttaaaatgg ctctcgtaga taacttttct cacaataata tagatgaatt      2160
     caatcaatct attcataccg tggagtctaa taccaattac ttacgtattt tccagtggaa      2220
     cattagaggc atgaatgacc ttgcgaagtt cgatacaatt ctagaaacgt tagaccaatg      2280
     caatgtgcca atcgatgtta tcgttatagg agaaacatgg gtaaaggagg aacacaaaca      2340
     attgtattat attcctggct ttaattctgt attttcatgc agagataact ccaatggtgg      2400
     attggctatg ttcatcagga ccgatatcac cttcactcca gtgcgtaacg ttcattcaga      2460
     tggatttcac catatctctg tcgagcttgc aatcaatggc cgtatgtatg atgtccatgg      2520
     tttctatcgt cctccgtcat ttgatgtcaa tgtttttatg aataaattag aagattgtct      2580
     tgataattca aatcataacc gctcttgttt ctttgttggt gacgttaata tacctattaa      2640
     tgcaaaaaat aataacgtgg ttgtcaaata catgtccttg ctcgagtcgt atggatttgc      2700
     ttgcacaaat acaatgccta ccagaccgat cagcatgaac attcttgatc atgtagtttg      2760
     tagattaaat gacattcaga actcaaggaa tgacacaatc tcgacctgtg aaagtgatca      2820
     ttctatgatc atcgcttcct ttaaattagc tgacaaaaga gaaaaaataa ctatttcaaa      2880
     aacaattgta gaccatcgaa aaattgctgt cgaatttaat aattttctgg gtagtgtttg      2940
     tgaagtaaca gatgtcaacc tttgttttga aaatatcgta tctacttata agaatttact      3000
     tgtgaaatat tccaaaacta ttaccaagaa tgtaagcact aaaaacagtt tttgtccttg      3060
     gatgaatttc aatgtgtggt cgttaataaa gcttaaaaat aactacatca aaagagttaa      3120
     aagaaaccca caagacatac atctaaaaga tctcctaaaa cacgtctcga acaaagttat      3180
     catagcgaag aagcaatgca agaaattgta tttcgacaac attttaaaca atacaccaca      3240
     ctcgaagttg tggaagcaca taaacaacat ttttgggaaa gatgctaaaa ctgataaaat      3300
     taccctaatt gaagatggtg caaaaatcac tgacgatcaa caaattagtg aaatattcaa      3360
     caattatttt tcgagcatag gccaaaaatt agccgatagc attcaggtgg atgctggagt      3420
     gaacccactt tcaaatgtaa gacgtgtgtc tagttctata tttttgaatc cagctacagc      3480
     taatgaagtg acaatgatta ttaatgattt ggagcgtaaa aaaagtccgg ggcccgataa      3540
     aatcaatgtt gatctcatca aaagcaattc tgatcacttt tccagaatac tatctgattg      3600
     tttcaataga attattgaaa ctggctcata tcccaactgt ttaaaaattg ctagagtcat      3660
     tcctatttta aaatctggta atgtttgtga tacaagcaac taccgaccga tctcaacact      3720
     atccatattt aataaaatat tagaaaaatt gcttattaac aggtttattc cttttcttaa      3780
     acagcacaac gtgttgtaca gttttcaata tggttttcgt caaggcagca gtacagctac      3840
     ggcgactgtt gaattgcttg acgatataat aaaggggatt gatgaaaagc aaatcgtcgg      3900
     tgcactcttc ttagatttac gcaaggcttt tgacacattg aaccatgcaa tactcttaga      3960
     taaattggag gcctacggaa ttagaggtat agcaaatgaa attgtgcgca gctatttgca      4020
     agatagaaaa cagttcgtca caattggtga ctcacagagt tcgttaaagt ccttaggggt      4080
     aggtgtacct caaggtagca atattggtcc attattgttt ctgttgtacg tgaacgacct      4140
     aaataggttg caattaaagg gaacaccacg tttatttgct gatgacacag ctctgttcta      4200
     tccgcactta gatgcagatg caatagtgga gcatatgacc gaagatttga gtattctgtc      4260
     gcaatatttt tcttctaatt tactttcttt aaatgtaatg aaaaccaaat atatgatgtt      4320
     tcactcatct agaaagattt ttcaacaacg aaaccaagtc ttactcaact cttcctgtat      4380
     tgaacaagta tcatcattta aatacttagg tttgatgctg gattctaccc taagctgggc      4440
     aaatcacatt aaaaatgtag aaaaaaaggt atcatcgcta tgtggaatta tgcgaagagt      4500
     aagtcatttt gtatcgcgca gaatactttt aaacttctat tttgctcata ttcactcacg      4560
     cctgagctat ctaattatag catggggtcg tgcctcgaag tcttctttga aaaagctcca      4620
     aactctccag aatagatgtt tgaaaacgat atttagcaaa ccgtttttat ttcccactct      4680
     tcaactttac tctgatgtct ctcacaatat ccttccaatt cacagtctct gtaaaattca      4740
     gactctaata tttgttcatg acactctgca caataatctt tttcatcata atattcaact      4800
     accttcaata tcccatggct atcgtacaag acgtacacat aatttgcatc aaaatagagc      4860
     acttacaatg tttggtcaaa aaagaatttc aatcattggt cctaakctgt acaatcaatt      4920
     accggattac ttgaaacaaa taagcgatcg aaatagtttc aaacaaaagc taaagcaata      4980
     cttaaaacta aatcttcacg acattcttgg ataaaaaata atattcgtat tttgagcaat      5040
     atgtcaacta ccagaaacca atcatagatt aattaaattc tttttttctt aaatatcttt      5100
     ctttttttgt ttaaagttaa ttagtaatta tatcataagt gggtccctta aaaggaacat      5160
     ttgttccact gggacgtcac gccatgtaat tctatttaaa ttaattaaaa tctagtttaa      5220
     cgttaatttc aatctcagct catgttttgc ttgttttttc attagttttt tattgttcac      5280
     gtgctgcaca gagtgagctg agatagttgc gtccactacc aggaagctac acgtgagctt      5340
     tttggtgtgg gggaaagtgg cgggtaaaaa aaaaaaaaaa agaaa                      5385
//
ID   Crack-8_CQ  repbase;    DNA;    INV; 3347 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3347
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 39-39 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..2870
FT                 /product="Crack-8_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLNIRSMNNVTKFDSIKEVLHRFDRRVDIIVLGETW
FT                 IQQDRVCLFSIAGYKSMFSCRNESNGGLAVFYRDELDVDECCNTIKDGMHH
FT                 IQLVLKRGKPIDFHAIYRPPNFEARRFISEMEQFVSSSKPGHDCIIVGDMN
FT                 IAVNQPSVNTVQEYTRVLESYNTYVTNNVVTRPMSSNVLDHAICSEALLDK
FT                 VVNETVFHDLSDHCLVLSSFNLGCSTARTTLEKDIIDHRRLNQQFHEFMIG
FT                 LPMEMSANEKLTAVITNYNNFVKQCTKTVTVQAKIKGHCPWIRFDLWTNMR
FT                 WKENLLKRSRRNPLDEEVAGLLSHVSRMLQTKKDRCKKDYYQRLLSNTSQK
FT                 NAWRIVGDVLGRNGVNDAPRSVYDNGGVTTTDMNKICQLFNEFFCSVGHKL
FT                 AATIPSDRNICRFNTLPRRPDSMFLSPTTYNEVVSLINQLDTKKCAGPDNI
FT                 SATFIKVHYEVFAQLISDVFNEIIMTGQFPDCLKVARVVPVYKAGDKKDVN
FT                 NYRPISTLSVLDKLIEKLIVCRVNAYVTRKTDDRPAILYSHQYGFRPGSST
FT                 LTATCDLVEDIYSSLDSKLLAATLFIDLKKAFDTINHDLLLQKLERYGIRG
FT                 TPLELLKSYLQGRQQYVSIGKHRSGWCPITVGVPQGSNLGPLLFLLFINDI
FT                 GKLQLNGKTRLFADDTSVSYRGGTCEELQRQMAADIVLLNDFFRTNVLSLN
FT                 LAKTKYMIIHSSRRRVPDHPQLIVNGQTVEEVSSYPFLGLVLDSTMSWTAH
FT                 IRALKSKLSSLCGIFWRISSFIPYPQMKMLYFALVHSRIQYLVANWGAACK
FT                 TDLHDLQVLQNRCLKIISRKPLLFPTTQLYSDCTDSILPVKALYELQTMML
FT                 HRKISTDAKQHHNFALRRRESSRASRQLGDFILPRPYTEFGRKKFSYLGGK
FT                 LYNALTTDCKKTTTIAAFKRLLTINMKQRIHLFV"
XX
SQ   Sequence 3347 BP; 1001 A; 837 C; 729 G; 778 T; 2 other;
     ttgawgagtg gcttatttcc aataccaatc taccccatga gtcgtctttg agaattatgc        60
     agctcaacat tcgcagcatg aacaatgtaa caaagttcga cagcataaaa gaggttctac       120
     acagattcga cagaagggta gacataattg tactaggtga aacgtggatt caacaagatc       180
     gcgtttgttt gttcagcatt gcggggtaca agtctatgtt ttcctgtcgg aatgaatcaa       240
     atgggggcct ggcagttttt taccgagatg aactcgatgt ggatgaatgc tgcaacacaa       300
     ttaaggacgg tatgcaccat atccaactgg tgctgaagcg gggtaagccg attgatttcc       360
     atgcgattta tcgtccacca aatttcgaag caaggagatt tatttccgaa atggagcagt       420
     ttgtgtccag cagcaaacca gggcacgatt gcataattgt tggagacatg aacatagcag       480
     taaaccagcc atccgtcaac accgttcagg agtacacgcg tgttctggag tcctataaca       540
     cttacgtgac aaacaatgtg gttactcgac ctatgagctc aaatgtgctg gatcatgcca       600
     tctgctctga agcgctgctc gataaggttg tgaatgaaac agtctttcat gacctgagcg       660
     atcattgttt ggtgctgtct tcattcaatc ttggttgcag cacagcgaga acgactctgg       720
     agaaggacat catcgatcat aggcgactaa accaacaatt ccacgagttt atgatagggt       780
     tgccgatgga aatgtcagcc aatgagaaac ttacagcagt aattaccaac tacaacaatt       840
     tcgtcaagca atgcactaaa acagtaacgg ttcaggctaa gataaagggt cactgtcctt       900
     ggattaggtt tgacctgtgg actaacatgc gctggaaaga aaatcttctt aaaagaagca       960
     gacgaaatcc gctggacgaa gaagtagcag gcctgctgag tcacgtgtca cggatgctgc      1020
     aaaccaaaaa ggacaggtgc aagaaagatt actatcaaag attgctttca aacaccagcc      1080
     agaagaacgc gtggaggatt gtaggagacg tacttggaag gaacggtgta aatgatgcac      1140
     ctcggtctgt ttacgacaac ggaggcgtga cgactacgga catgaacaaa atctgccagc      1200
     tgttcaacga gttcttctgc agtgttgggc acaaacttgc ggccactatt ccaagtgatc      1260
     gaaatatatg tcgcttcaac actctgccgc gccgtcccga ttctatgttc ctcagtccca      1320
     ctacgtacaa tgaagtagtc tcgttgatta accagctgga caccaagaaa tgtgcgggac      1380
     cggacaacat atctgcaact ttcattaagg tgcattacga ggtgtttgcg cagctgatat      1440
     cagatgtctt caatgaaatc atcatgactg gacagttccc ggattgcttg aaagtggctc      1500
     gagtcgtacc ggtttacaag gcaggagata agaaggacgt maacaattat cgaccgatct      1560
     caaccctctc agtcttagac aaactgatag agaaattgat cgtttgccgc gttaacgcat      1620
     atgtaacaag aaagaccgac gatcgccctg caattcttta ctcacaccaa tatgggttca      1680
     gaccggggtc gagcacgctt acggcaacgt gtgatctagt cgaagacata tacagctcgt      1740
     tggactccaa actacttgca gccaccctct tcattgacct caagaaggca tttgacacca      1800
     taaaccacga tcttctccta caaaagctgg aacgctatgg gatcagagga acaccacttg      1860
     agttactgaa aagttatcta caaggacgac agcagtacgt gtctattgga aaacacagaa      1920
     gtgggtggtg tcccataact gttggagtgc cccaagggag taacttgggt ccgttactgt      1980
     tcttgctctt catcaatgac atcggcaaac tgcagctcaa cgggaaaact cgactgtttg      2040
     cggatgacac gtcagtgtca tacagaggag gaacctgcga agaattacaa cgacaaatgg      2100
     cagcagacat cgtcctcctg aacgacttct tcagaacgaa cgtgctatcc cttaaccttg      2160
     cgaaaaccaa atacatgatc atccactcgt caaggaggag agttccagat caccctcaac      2220
     ttattgtaaa cggacagact gttgaagaag tttccagtta tccctttctt ggccttgttc      2280
     ttgatagtac catgtcctgg actgctcata taagggccct caaaagcaaa ctcagctctc      2340
     tgtgtggaat attttggaga atctcgtcgt tcattcctta cccacaaatg aaaatgctgt      2400
     actttgcttt ggtacactcc agaatccagt acctagttgc aaactgggga gcagcctgta      2460
     aaacggatct acacgactta caagttcttc aaaatcgctg cctgaaaatt atttcacgca      2520
     agccattgct gtttcctaca acccaacttt actcggattg tactgattcg atccttccgg      2580
     tgaaagcatt gtatgaacta caaaccatga tgctgcaccg caagatctca acggacgcca      2640
     agcaacatca caactttgca ctgaggagaa gggagtcatc tcgcgcatcc cgacaactag      2700
     gagatttcat cttaccacgg ccgtacacgg agtttggaag gaaaaaattc tcctacctcg      2760
     gggggaagtt gtacaatgca ctgacaaccg actgcaaaaa aacgacaacc atcgccgcct      2820
     tcaaacggtt actcaccatc aacatgaagc agagaatcca cctttttgtg tagaagtcaa      2880
     aactaatgtt ctgttacatc tcgtttcatg ccaccaccgc ccaccgccca ccgcccaccg      2940
     cccgccgacc accgcccacc gcccaccgcc caacgcccac cgcccgccgc ccaccgccca      3000
     acgcccaacg cccaccgccc accgcccaac gcccaccacc caccagcaac cgcccatcgc      3060
     caaacgccgc tcatcttagt caacaactgc caccaccgct cgccatcaat accaaatcat      3120
     agaatgtagt tagaatataa gaaatgcact gccttaaaag agcttaggct cactggctag      3180
     tgcaacagat tattgtggaa ggttaaagat caattgaaaa gaagggagcc catccccaaa      3240
     cttaaaaaga cagccgagcc taaccccagg tcaatcttgg agtaggtgaa tattccagca      3300
     aaatgctgag aagtgtgcaa ttcggtcttt aataaaaaaa aaaaaaa                    3347
//
ID   Crack-9_AAe repbase;    DNA;    INV; 4755 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element;
KW   Crack-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4755
RA   Kojima K.K. and Jurka J.;
RT   "Crack clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1225-1225 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity. Closely related to Crack elements in Culex pipiens
CC   (Crack-1_CP to Crack-4_CP).
XX
FH   Key           Location/Qualifiers
FT   CDS           341..1369
FT                 /product="Crack-9_AAe_1p"
FT                 /translation="MMSAENVIICVICDKEEPDVNKVLECLHCHKCYHYRC
FT                 KKLVGSAARKMRSQQFYCTVECNEMGMRTQHAVASENAVIQELRNVIKEVH
FT                 AMRDEAAASRRFLEDSIKEVEKSQDFLCTKFDEVVSELKQLKIDYSKMEKE
FT                 MFSVREDYSQLSDAVVTLEAEVDRFKRAELVRNVIVLGVPITREDNASAIV
FT                 NGIARVMGYALDEKIIEAYRLKASKTDGNYAPIRVVFADSNVKEEFFAKKK
FT                 IFGQMKVSALGGSFAALTGKITLRDEMTSYGLAMLREVRAMQEQLKAKYVW
FT                 PGRDGVILMKRTDTSKVEYIRNRMDIRALECSTSKRARGLSVSPEGPPAKR
FT                 "
FT   CDS           1373..4312
FT                 /product="Crack-9_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ICCFIIYLNQDKLNLKMESINHYYDTVEDCINNKAEL
FT                 IKNNVSLRIFQWNIRGTNSMPKFDLVKQFLDKYQDRIDVIALGETWLKEGC
FT                 TELFGVHGYKSIFSCRQESHGGLALYVREDFVVNVITNEHDDGFHCIHAEI
FT                 ASASNRFNIICVYRPPNFSYTDFQIKIESKLSSISNQKNVFLIGDTNVPVN
FT                 LSQNNVVREYRRILQSYNLSVTNTSVTRAASGNILDHLVCSVDQMGSIINE
FT                 TIYSEMSDHSMILTTLTSSSMKGMQTLTKRIINHTQLNERLSSALMDIPMN
FT                 LSANEKLLTVIEKFHEIQASATKEVIIQVKIKQQCPWMTFDAWKMMRIKDH
FT                 ILKSSRRHPNDQHLQNLLKHASKRLQQIKERCKRDYYHRLLLHSSNKKSWQ
FT                 MMNEMLGRKTNVNRAVLLRIDGKDVTDGFQVSNTFNDFFCRVGEDLANDID
FT                 SDKNIWKFRTLPMQSSSIHLRQATVSEVILLIKELDXNKSPGPDNISAETI
FT                 KTHHISFAKILTEVFNEIIETGEFPECLKIARVVPIYKSGDSANTNNYRPI
FT                 SVLSIMSKLLEQMLASRLSDFLFGNNLIYERQYGFRTGCSTLTATCEMVDE
FT                 IYSSLDKRKFSGALFLDLKKAFDTINHVLLLRKLECYGIRGKALLLLENYL
FT                 GNRQQFVTVNGERSCLRNISIGVPQGSNLGPLLFLVFINDLSRLKLHGRMQ
FT                 FFADDTVLLYSATEAANIARLIQTDLQCLQDYFTSNVLSLNLQKTTYMIFH
FT                 STRRIPQELPTVRIGTVEIRNVDSFQYLGLTLDSVMSWEKHIDNLKNKLAA
FT                 LCGTFRRLSSFIPLRWMLQLYYSMVHSRLQYLVCIWGKASASRLRELQVLQ
FT                 NRCLKVIYKKPHLFPTHQLYNDRNSSLLPIRGLQMLQTLIHMHNIITNANT
FT                 HHNVQIIRNTSARSSRYHGNIRLARPNSEMGKKRFSYLGSKSYNELPSSIK
FT                 NLSSPYLFKKKLKQYLKLHITRYII"
XX
SQ   Sequence 4755 BP; 1531 A; 967 C; 996 G; 1257 T; 4 other;
     ctgttgttgt ggaagtggtc gtgcctctat cgtgctgcat taagataagc aaaattgcta        60
     acaagaaggg ctataatatc gccaaatgtg tatatttgaa cacaagatca ggtgttgcgt       120
     cgcaggtggt attgtccaac tgaaatattt tgtgcaaatt gattaaaacg tccttaacta       180
     tttgccttga tagcagaacg attccatttt ggaacaaagc ccgttccgat ttggcataca       240
     atacagaatt gtacccacca tcgcctgttg gtgtagtgcg ttctaaattc acgccgcgcg       300
     attctgtgtt gtacgtatat acaacacatc ggtacagtca atgatgtctg cggagaatgt       360
     tatcatctgt gtaatatgtg ataaggagga accagatgta aacaaggtgc tagagtgttt       420
     gcactgccat aagtgctatc actacagatg caaaaaactc gtcggttctg ctgcgcgtaa       480
     aatgcgtagc caacaattct attgcaccgt ggaatgcaac gaaatgggaa tgcggacaca       540
     acatgctgta gcgtccgaaa atgcagtaat tcaggagctt cgcaatgtca ttaaggaggt       600
     gcacgctatg agagacgaag cggctgcgag tcgacgtttc cttgaagatt ccatcaaaga       660
     agttgaaaag agccaggatt ttttatgtac aaagttcgat gaggtcgtca gtgagttgaa       720
     gcagctgaaa atagactaca gcaagatgga aaaagaaatg ttcagtgtta gggaggatta       780
     tagtcagctg agcgatgcag tcgttaccct tgaggccgaa gtagatcgtt tcaagcgagc       840
     ggagttggtg aggaatgtca tcgtactggg agttcctatt accagagagg ataatgcttc       900
     agccatagtc aacggaattg cacgtgtcat ggggtacgca ttggatgaga agatcatcga       960
     agcctacaga ctgaaggctt cgaaaacgga tgggaattat gcgccaatca gagtggtttt      1020
     tgcggatagc aacgtaaaag aggagttttt tgctaagaag aagatcttcg gtcagatgaa      1080
     ggtatcagct cttggaggta gctttgctgc tcttactggg aagattacgc tccgcgacga      1140
     aatgacatcg tacgggctgg ccatgctgcg agaagttagg gcaatgcagg agcagctgaa      1200
     agcgaagtac gtttggccag gaagagacgg agttatcttg atgaagcgaa cagatacatc      1260
     gaaggtggaa tacattagaa atcgaatgga tatcagagct ctggaatgca gtacgtccaa      1320
     acgcgcacga ggattatctg tgtcgccgga aggaccaccg gcaaagcgat aaatttgttg      1380
     ttttattatt tatttgaatc aagataaact caatttaaaa atggaatcga ttaatcatta      1440
     ttatgatact gtagaagatt gtataaacaa taaagctgaa ttaataaaaa ataacgtctc      1500
     tctccgaatt tttcaatgga atatacgagg aacgaattca atgcctaaat ttgatctggt      1560
     gaagcagttt ttggacaaat atcaggatag aattgatgtc attgcgctag gcgaaacatg      1620
     gttgaaagag ggttgtactg aactgtttgg ggtgcatgga tacaaaagca ttttttcatg      1680
     tagacaggag tcccatggag gtctagcgtt gtacgttaga gaagattttg tagtaaatgt      1740
     gatcactaat gagcatgatg atggattcca ttgcattcat gcagaaattg catcagcaag      1800
     taatcgattc aatatcatct gcgtatatcg tccaccaaat ttcagttaca ccgattttca      1860
     aatcaaaatt gagtctaaac tcagtagcat ttccaatcag aaaaacgtgt tcttgatagg      1920
     agatactaac gttcccgtga atctgtcaca gaacaacgtt gtcagagagt acaggaggat      1980
     tctacaatcg tataacctat ctgtcaccaa cacatcagtg acacgtgcag caagtggaaa      2040
     tattctcgat catttggtgt gcagcgtaga tcagatggga tcgataatca acgaaacaat      2100
     atattcagaa atgagcgacc attcgatgat actaacaacc ctaacatctt cttccatgaa      2160
     agggatgcaa acgctgacga aacgaataat caaccacact caactgaacg aaaggctttc      2220
     ttctgcgctg atggatattc ccatgaattt gtctgccaat gagaaactct taacggtgat      2280
     cgaaaaattc cacgaaattc aagcgtcagc aacaaaggaa gtaatcattc aggtcaaaat      2340
     taagcaacaa tgcccttgga tgacctttga tgcatggaaa atgatgagga ttaaggatca      2400
     tatactcaaa tcaagtagac gccacccaaa cgaccaacac ctgcaaaacc ttcttaagca      2460
     cgcatcgaaa aggcttcagc aaattaagga acgatgtaaa cgtgactact atcatcgatt      2520
     actcttgcac tcgtctaata aaaaatcatg gcaaatgatg aatgaaatgc taggacgcaa      2580
     gaccaatgtt aatcgcgctg tattattgag gatcgatggc aaagacgtaa ccgatggctt      2640
     ccaagtaagc aatactttta atgatttttt ctgtcgagtt ggagaggatc tagctaatga      2700
     tatagacagc gataaaaata tctggaaatt ccggacctta ccaatgcagt catcctccat      2760
     tcatcttcga caagctacag tatcagaagt aattctactc attaaagaac tcgattscaa      2820
     caagtctccg ggacctgaca acatatctgc tgaaactata aaaacccacc acatttcgtt      2880
     tgccaagatt ttgacggaag tattcaacga gattatagaa acaggggaat ttccggaatg      2940
     cttgaaaatt gctcgtgtgg tgccgatcta caagtctgga gattctgcga ataccaacaa      3000
     ctatcgtccc atatcagtgc tgtcaatcat gagcaagttg ctggagcaaa tgctcgcgtc      3060
     aaggctttca gactttcttt ttgggaataa ccttatatac gaaagacaat atggcttcag      3120
     aacaggctgt agtactttaa ccgccacgtg tgaaatggta gacgaaatat acagttctct      3180
     tgataagcgt aagttctctg gagcattatt cctggaccta aaaaaggcat tcgacactat      3240
     aaaccatgtt cttctgcttc gtaagctcga atgttacggc atacgaggaa aagcgctgct      3300
     gttgttggaa aattatctgg gtaatcgaca acaatttgtt accgtcaacg gtgaaagaag      3360
     ctgcttacgc aatatatcga ttggtgtccc acaaggtagt aatcttgggc cactattgtt      3420
     ccttgtattt atcaacgacc tatcacgcct taaactwcat ggaagaatgc agttctttgc      3480
     tgatgatacg gtacttctgt atagtgccac agaagccgct aatatagcgc ggcttattca      3540
     aacagatctg cagtgtctac aagattattt cacatcgaac gtcctttcgt taaacctaca      3600
     aaaaactacc tacatgatat tccactcgac tagacgaata cctcaagaat tacctacagt      3660
     tcgaatcggt acggtcgaaa ttcgtaacgt ggacagcttc caatacttgg gcctcacctt      3720
     ggatagcgtt atgagttggg agaagcacat cgacaatctg aagaacaaac ttgcagcatt      3780
     gtgtggaacg ttccgaaggc tatcttcatt cattccattg agatggatgc tacaactgta      3840
     ttattcaatg gtacattcaa gacttcagta cctagtttgc atttggggaa aagctagtgc      3900
     atctagacta cgtgagctcc aggtgttaca aaaccgttgt ttaaaagtca tctacaagaa      3960
     accccatttg ttcccaacac atcagttgta caacgatcgg aacagttcat tgcttccaat      4020
     tcgcggactt caaatgctkc aaactttaat tcacatgcat aatattatca ctaacgccaa      4080
     cacacaccac aacgtgcaaa taatccggaa tacttcggca agatcatcca gatatcatgg      4140
     caacattcgt ctagcccggc ccaatagcga aatgggcaaa aagagattta gctatctcgg      4200
     tagtaaatct tacaacgagc taccctcttc gatcaagaac ctttcatctc cttatttgtt      4260
     caagaaaaaa ctgaagcaat atttaaagct ccatataacc cgctacataa tttgaaaata      4320
     tggttgctaa acctcaaacc gtttcttgtc tgcctttttt ttcgtttccg ctcctccgcc      4380
     accctcaacg ccacccgcca ccacccagca caacccgcca ccgccagcca ccgccgccca      4440
     acgccacatc aaagcaccac atcgccaaca aataatccca cttgttaaat aattttaagt      4500
     tagttaccac tccacaatta ttgtgaaaac ttaaaatccc acctccttca aagagtgcac      4560
     actcactgga ggtgaatatg waaatctttc tgttattgga attgtgaaat tgaaaagatg      4620
     aggaggtttt atgcctgttg gaggaaggat aaatatggag aatattctac tccagcgggc      4680
     ttttccctgc tccggtaaaa aataaaaata aataaataat taaattaaaa aaaaaaaaaa      4740
     aaaaaaaaaa aaaaa                                                       4755
//
ID   Crack-9_CQ  repbase;    DNA;    INV; 2335 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Crack non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Crack-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2335
RA   Kojima K.K. and Jurka J.;
RT   "Crack non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 40-40 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..2333
FT                 /product="Crack-9_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="RPSNETSLQQRAGSCGLQRRASRERNQRDHLHLSDHN
FT                 LIVSFFKSSTPYLKQTHQKQIVDHNKLNEMFIQSMAGLPRSLPAEEKLIHI
FT                 IDRYNSLRQQCTKTVTIKAKVKGHCPWMTFNIWKLIQIKESILKRRRRNPD
FT                 DQHLADLLAHVSRKLQNEKSASKRNYYGNLLANGDQKTAWRVINDALGKQA
FT                 SRTHPNELCVNGRSTKDLNEICQLFNDFFCDVGPNLAATINSDRNINKFGT
FT                 ITPLRWNIYLRPTTAAETTILINELNSKKASGPDNIPVTFVKTHFNIFSLL
FT                 LADVFNEMLETGNFPQCLKIAKVIPVYKSGDTKDPSNYRPISCLSVLDKII
FT                 EKLLVTRIMDYANHLKIIYEHQYGFQKAKSTLHATCDLVEDIYDSLDRREI
FT                 DGAVFIDLKKAFDTIDHQLLLEKLSSYGFRGVARSLIQSYLSDRLQFVAIG
FT                 ESRSSPGLVTTGVPQGSNLGPILFLLFINDLAKLGLRGKVRLFADDTSLFY
FT                 KGKDCTTIQQHIREDLEKLCSFFQTNLLSLNLAKTKYMLIHSPRRPLPARQ
FT                 PILINNHTIEEVSNYPFLGLTLDNTMSWDAHIDQLKRKLSSIGGVLRKVSS
FT                 FLPPSALKALYFSLVHSRLIYLITIWGHANCHRLRELQVTQNRCLKTVLRK
FT                 PHLFPTRQLYEDPDNSFLPVRALHELQMVTHIWKNPSLGQGRMHVNRASRQ
FT                 EGHFYLPRPRSEFGRKKIK"
XX
SQ   Sequence 2335 BP; 683 A; 615 C; 491 G; 546 T; 0 other;
     cataccacca gcattttggt agtcatcaat gaactggacc aaatcttatc gagcacaacc        60
     agcagccaag aatgtatcct gcttggcgat atgaacattc ctgtgaacct tcctgctgtc       120
     ccttccgttc gtgactacac gcacctactt gcgtcttaca gcttagctgt gactaacgac       180
     cgagtaacga gaccagcttg caacaacgtg ctggatcatg tggtttgcag cggagagcta       240
     gccgtgaacg taaccaacga gaccatctac acctgagcga ccacaaccta attgtctcct       300
     tcttcaagag ttcgactccg tacctgaagc aaacacatca gaagcaaata gttgaccaca       360
     acaagctgaa cgagatgttc atccaatcca tggcagggct accgcgatcg ctgccagctg       420
     aggaaaaatt aattcacata attgaccgct ataactcact caggcaacaa tgcactaaaa       480
     cagtaacaat taaggctaaa gtaaaagggc attgtccatg gatgaccttc aacatatgga       540
     aactcattca aattaaggaa agcatcctta aaagacgccg gcggaatcca gatgatcaac       600
     accttgcgga tcttttggcg catgtttcaa gaaaactgca gaacgagaaa tcagctagca       660
     agagaaatta ctacggcaat cttctcgcta atggtgacca gaaaacagca tggagggtta       720
     tcaacgacgc tctagggaaa caagcctcgc ggacccaccc gaacgagcta tgcgtcaatg       780
     gaagatcgac taaagatctg aatgagatct gtcagttgtt caatgatttc ttctgcgacg       840
     tcggtcccaa cttagcagct acgattaaca gcgacaggaa catcaacaaa tttggaacta       900
     tcacccctct tcgttggaat atttaccttc gacctacgac tgcagcagaa acaacgattc       960
     ttatcaacga acttaactcc aagaaagcat ctggtccgga caatattcca gtcacattcg      1020
     tcaaaacaca cttcaacatt tttagtcttc ttctggctga cgtcttcaac gagatgctcg      1080
     aaactggcaa cttcccccaa tgtttgaaga ttgccaaagt aattcctgtc tacaaatccg      1140
     gagacaccaa agacccaagc aactaccgtc caatatcctg tctctctgtt ctggacaaga      1200
     tcatcgagaa gctgctagtt accaggatta tggattatgc taaccatctc aagataatct      1260
     acgagcacca gtatgggttc cagaaagcga agagcacctt acacgcaacc tgtgatcttg      1320
     tagaagacat ctacgactcg ctggacagac gggaaattga cggagctgtg ttcattgatc      1380
     ttaaaaaggc ttttgacacc attgaccacc aactgctact ggaaaagctg agttcttatg      1440
     gattcagggg cgtggcgcga tcgcttatcc agagctacct gtcagaccga ctacagtttg      1500
     tcgcgatagg tgaatctcgg agttcaccag gcctcgtgac aaccggtgtt ccgcagggta      1560
     gtaatctcgg tccaatcctg ttcctgctgt tcataaacga cctggcgaaa ctgggtctgc      1620
     gaggaaaagt tcgtttattc gctgacgata catctctgtt ctataaaggc aaagattgta      1680
     caaccatcca gcagcacatc cgagaggacc tcgagaaact ctgcagcttc tttcagacga      1740
     acctcctctc gttgaacctg gccaagacga aatacatgct gatacactcc ccccgaagac      1800
     cgctcccagc acgtcagccg attctgatca acaatcacac aattgaagaa gtttccaatt      1860
     acccattcct cggacttacc ctggataaca caatgagctg ggacgctcat atagatcaac      1920
     tgaagcggaa gctatcttca ataggtggag tcctacgaaa ggtgtcgtcg ttcctgccac      1980
     catctgcact aaaagctctg tatttctcgc ttgtccactc tcggctgatc tacctgataa      2040
     ctatctgggg acatgcaaat tgtcatcgtc tccgggagct gcaagttaca caaaataggt      2100
     gccttaagac cgttctccgc aagccgcatc tgttccctac gcgacaacta tacgaggatc      2160
     ccgacaactc ctttctacca gttcgagctc tgcacgagtt gcagatggtg actcatatat      2220
     ggaagaaccc ctccctaggc cagggtagga tgcacgtgaa ccgcgccagt cgacaggaag      2280
     gacatttcta ccttccgagg ccgagatcag aattcgggcg gaaaaaaatc aaatt           2335
//
ID   CRE-1B_FoCa repbase;    DNA;    INV; 4188 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-1B_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4188
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2709-2709 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. The consensus is ~91% identical to
CC   that of CRE-1_FoCa.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..4143
FT                 /product="CRE-1B_FoCa_1p"
FT                 /note="PHD finger, RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MPLFNRPPQCRQLCPNPLLSANNATIQVLDSPVSTHN
FT                 ETSRSTQLDAHRSSFVGGSQIAKVESSDLDRSSPFNGVFYRIETGKIIAQP
FT                 SSSPLPPSSSPLLPSSSPLLPLSSSSSSTPLPLSSSSSPPPPSSSSSPLLP
FT                 LSSSSSPPPPSSSSSPLLPLSSSSSSTPLPLSSSSSPPPPSSSSPRPHPGP
FT                 RKKRNKQKKRTKPRKLPPPTSSQPLPHTTEGLNPVFEDLFCPVSGCPGPSS
FT                 IGTDEWILCNACLIWYHTSCLFLQAIPEGDWFCANCPQIDTQIGPQINSNT
FT                 SSPANQSYLGTHIQLTQSIPFTNPRASQPISTLSTPLSNFISSKETCTSLT
FT                 LEWLNNHIVPGGVIEKAILHDAYRRDSLGIFKPINDAEMGKLIKNSFSNIR
FT                 TKRIRTELHGTSKYHYVGIQFKSEHSADSVFDFQTIISSLRQNCPTLKQCP
FT                 KACRIPVAQVLKSAVDKCISENTPEAWHLLLTFPYITLQCESKANIKNGQS
FT                 LNSKIRNNLSIFESLDKNTYQDYLITLSSKNSAHDKPGSTIKDIGPKVISK
FT                 VSEGNIRGAIRLLTSDDIIAPNSSETLETLVEKHPPQPLDNFTVLDEPNIP
FT                 PFTTTVEQVISAIFSFPSGSAGGLDALRPQILKDLVSQHTGDVGTQLLESM
FT                 TKFCNFMLAGKVPLDICPFIYGASLTALKKKSGGIRPIAVGCTYRRIVSKI
FT                 CVKVMNHVFQDYFSPVQVGFNVKNGAEAGAHAARRFFSFPHKSPTAFLKID
FT                 FKNAFNMVDRGKLLSSVHELVPTLYPYINQCYRFSSSLVWNSSLIESCRGV
FT                 QQGDPLGPPLFCLILHPVVSNLGSEFNMWYLDDGTLGGDPTTVLDDFKHII
FT                 SCANEVGLELNFDKCEVSVLGLQTNTQCILESFQSVAPGISCMTQENAELL
FT                 GAPLTYESIEHVFRKKINAFSNMAGRLNSIPNHIAYYLLKHSLAIPRLVYL
FT                 LRAAPIFKSPHLLEEFDSLLHDTLEQITNCQINPLSLEEIALPVKLGGLGI
FT                 KQSKTLATPCFLASSFATTDLVSLILPSYVTALSDSLVTEAQDLWKSISCD
FT                 ELPRSTISSIQSSWEIPIFNQVCSRILDSSTTPINTARILASRSKESGAWL
FT                 QALPSRNLGTLLDDNSFRIAIGLRLGLKLCFPHKCVCGTQIDELGLHGLSC
FT                 KKSAGRHSRHTQCNDIIKRALISADIPSIREPLGCCRTDGKRPDGLTLIPY
FT                 KQGRSLIWDFTCTDTFAPSYLSHTLRHAGTAAKLAETKKHKLYSELEKQYI
FT                 FVPVAVETSGVWGMEGLKFIQDVGRRMKDVTGPMSTTFLIQRISLAVQRGN
FT                 AASIMGAVPSQRGLEELFYILNDRSFYLQKSCKGPNGDLGRLSGSSKGFPN
FT                 PPTSGFSSTPQAN"
XX
SQ   Sequence 4188 BP; 1232 A; 976 C; 763 G; 1217 T; 0 other;
     tgcatcattg ccaaaatgcc actgttcaat agaccaccgc aatgtcgtca gctatgcccc        60
     aaccctctac tgtctgcaaa taacgctaca attcaagttt tagattcacc tgtttcgact       120
     cataatgaaa catcccgatc cacccagtta gatgcccaca ggtcaagttt tgtcggtggg       180
     agtcaaattg cgaaagttga gtcgtccgat ctcgatagaa gctcaccatt caacggagta       240
     ttttaccgaa ttgaaaccgg aaaaatcatt gcacagccat cgtcgtcccc gctgccgccg       300
     tcatcgtccc cgctgctgcc atcatcgtcc ccgctgctgc cgctgtcatc ttcatcgtcg       360
     tcaaccccgc tgccgctgtc atcttcatcg tccccgccgc cgccgtcatc gtcatcgtcc       420
     ccgctgctgc cgctgtcatc gtcatcgtcc ccgccgccgc cgtcatcgtc atcgtccccg       480
     ctgctgccgc tgtcatcttc atcgtcgtca accccgctgc cgctgtcatc gtcgtcatcc       540
     ccgccgccgc cgtcatcatc atcaccacga ccacatccag gaccaagaaa gaagaggaat       600
     aagcagaaga agaggaccaa accaagaaaa cttcctcctc ccacatcctc ccaaccactc       660
     ccccatacca ccgagggttt gaatcccgtt ttcgaggacc ttttctgccc ggtttcgggc       720
     tgcccaggac catcatcaat tggaacagat gagtggattc tatgtaatgc atgtttaatt       780
     tggtatcaca cctcttgcct tttcttgcag gccattcctg aaggtgactg gttctgcgca       840
     aactgtcccc aaatagatac acaaataggc ccccaaataa actcaaacac atcgtcgcca       900
     gcaaatcaat cttatctagg cacacatatt caactcacac agtcaatccc ctttacaaat       960
     ccacgtgcat cacaaccaat ttctacatta agtacaccac tttcaaattt tatatctagc      1020
     aaggaaacat gtacatccct tacattagaa tggctaaata accacatagt acccgggggg      1080
     gtaattgaga aagctatatt acatgacgct tatagacgag actccttagg catttttaaa      1140
     cccattaacg atgcagaaat gggtaaattg ataaaaaatt cattttcaaa cattaggacc      1200
     aaacgaatta ggacagaact tcatggcact tcgaagtatc attacgtagg gattcagttt      1260
     aaatcagaac acagtgctga ctcggttttt gatttccaaa ctatcatttc atctcttagg      1320
     caaaattgtc ctactcttaa acaatgtcca aaggcctgta ggatccctgt agcccaagtt      1380
     cttaaatccg ccgtagataa atgtataagt gaaaacactc cagaggcatg gcatctcctt      1440
     ttgacctttc catatattac attgcaatgt gaatcaaagg caaatattaa aaatggtcaa      1500
     agccttaata gcaaaatccg aaacaactta tccatatttg aatctttgga caaaaataca      1560
     tatcaggatt atctcattac tctctcttcc aaaaattcag cccatgataa accaggtagc      1620
     accatcaagg acattgggcc aaaagtcata tctaaagtat ccgaaggaaa tattcgtggt      1680
     gcaattcggc ttttaacttc agatgatatt atcgccccaa attcttcaga aactctggaa      1740
     acacttgtag aaaagcaccc accacaacct ttagataatt ttactgtttt agatgagcct      1800
     aacattccac cttttacaac aacagtagaa caggttatct cagcaatatt ctcatttcct      1860
     agtggttcag cagggggttt agatgcatta cgaccacaaa ttctgaaaga tttagtttca      1920
     caacatactg gtgacgtagg aactcaattg ttagaatcta tgacaaaatt ttgcaatttt      1980
     atgttagcag gaaaagttcc tttagatatt tgtcctttca tttatggcgc aagtctgacg      2040
     gcccttaaaa agaaatcagg tggtattaga cctattgcag taggttgcac ttatcgtaga      2100
     atagtttcaa aaatttgtgt caaggtcatg aatcatgtct ttcaggatta ttttagtcca      2160
     gtccaagtag gtttcaatgt aaaaaatggt gctgaagcag gagcacacgc tgcccgtaga      2220
     ttcttttcct ttccacataa gtcacccaca gcctttctta aaatagattt caaaaatgct      2280
     tttaatatgg tggatagagg gaaattgctt tcatccgttc acgaacttgt accaaccttg      2340
     tatccttata ttaatcagtg ctatagattc tcatccagcc ttgtctggaa ttcttcttta      2400
     attgaatcat gtagaggtgt tcaacaagga gatccgttag gtccaccact tttttgtttg      2460
     attctacatc cagtcgtttc aaatttaggg tcagaattta atatgtggta cttggatgat      2520
     ggtacattag gtggcgatcc tactacagtt ttagacgatt tcaaacatat tatctcgtgt      2580
     gcaaatgaag taggtttaga attaaacttt gataaatgtg aggtttcagt tttaggtcta      2640
     caaaccaaca cgcaatgtat actagaatct ttccaatcag ttgcaccagg tatttcatgt      2700
     atgactcagg aaaatgctga acttttaggt gcacctttaa cgtatgaatc aattgagcac      2760
     gtttttcgca aaaagattaa cgctttttct aatatggcag gtcgattaaa ctccattccc      2820
     aaccatattg cgtattatct cttgaaacat tctttagcga ttccacgatt agtataccta      2880
     ctgagggcag ccccaatttt taaatctcct cacttgctag aagagttcga ttctttgctc      2940
     catgatactt tagaacagat tacaaactgc caaattaatc ctctatctct agaagaaata      3000
     gctttgccgg ttaaattagg aggtttggga attaaacaat cgaaaacttt agcaactcca      3060
     tgcttccttg catcttcatt tgccactaca gatttggttt ctttaatttt gccctcatat      3120
     gtcactgctt tgtccgattc acttgtgacc gaggcgcaag acttgtggaa gtcgattagt      3180
     tgtgatgaac tacctcgcag tacaatttcc tctattcaat catcatggga aatcccaatt      3240
     tttaatcaag tatgttcacg tatcctggat tcatccacca ccccaattaa taccgctagg      3300
     attttggcat ctcggtcaaa agagtcaggt gcatggttgc aagctttacc atccaggaat      3360
     ttaggcacac ttttagacga taattccttt aggattgcaa ttggtttgag gttaggttta      3420
     aaattgtgtt tcccccataa atgtgtttgt ggtacacaaa tagatgaact aggattacat      3480
     ggcctttcat gtaaaaaaag tgctggcagg cactctcgac atacacaatg taacgacata      3540
     ataaagagag ccttaatttc tgcagacata ccaagcatta gggaaccatt agggtgttgt      3600
     aggacagatg gaaaaagacc ggatggtcta acactaatac cttacaaaca gggacgctca      3660
     ctaatatggg actttacatg tacagacact tttgccccct cttatctctc tcacacactt      3720
     agacatgctg gcacagcagc aaaactagcc gagaccaaaa aacacaaact ttactctgaa      3780
     cttgaaaaac aatatatctt tgttccggtg gctgtcgaga catcaggagt atgggggatg      3840
     gaagggttga agttcatcca agatgttggg aggaggatga aggatgtcac tggaccaatg      3900
     tcaacaacat ttctcattca acggatcagt ttggcagttc aacgcgggaa tgcggcatca      3960
     atcatgggag ctgtccccag tcaacgagga ttagaagaat tattttatat tttaaatgat      4020
     aggtcgtttt atttacaaaa atcctgtaag gggccgaatg gtgatctcgg acgcctatcc      4080
     ggatcaagta aaggttttcc caacccacca acatcgggtt tttcctctac tccccaagcc      4140
     aactaagtgt atttcatact ttatcaatgt ttatgttaat aaataatt                   4188
//
ID   Cre-1_BM    repbase;    DNA;    INV; 3812 BP.
XX
AC   .
XX
DT   14-OCT-2009 (Rel. 14.10, Created)
DT   15-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Cre-1_BM non-LTR retrotransposon - consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; Cre-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3812
RA   Kapitonov V.V. and Jurka J.;
RT   "First examples of CRE non-LTR retrotransposons in animals.";
RL   Repbase Reports 9(10), 2157-2157 (2009).
XX
DR   [1] (Consensus)
XX
CC   Cre-1_BM is a family of non-LTR retrotransposons that belong to
CC   the CRE clade. The silkworm genome contains >100 copies of
CC   Cre-1_BM that are ~98% identical to the consensus sequence. Most
CC   copies of Cre-1_BM are 5' truncated. The silkworm genome contains
CC   several families of Cre non-LTR retrotransposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           894..3770
FT                 /product="Cre-1_BM_1p"
FT                 /note="RT and RLE domains."
FT                 /translation="MSHSQPLPPNPNTFPAGLTQCDECLRYFKGNRGLKIH
FT                 TGRIHKAESVPNTLCPGSSRDNRVSVVPLWKKLSLYKNNSPVVKRVPRGAR
FT                 VMVAEELKKNIDQVLHDNNVTSWEDLLSFAYRILHVDKQSNNSHSLTKKIK
FT                 DNCKNNSNKTLLDDGVNYDKQQRPFNKVAKIEGKVSDGDLKGASQLLFSSD
FT                 SLAPNNADTLLALKSKHPAPLTPVSVPPPQSSTTLPRVSLDDVLTTITSFK
FT                 NGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIA
FT                 DILYGANLCALMKRDGGIRPIAVGGTLRRIVSKLCCKEVLPILSGMFRPIQ
FT                 LGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKE
FT                 HIPSIYPYLYQCYGNPSKLVYKENLVESATGCQQGDPLGPAIFSLGIHPVL
FT                 RELKSSLNLWYLDDGTLGGDISTVLKDLEYLKSALASLGLELNFAKCELFI
FT                 NASCCSVPVSDVFAKFNTAAPNIKVVDENSLMLLGAPILDGSIDAYIDEQI
FT                 DKFSQCSNNLFEINSHMALFIIRHCLFVPKFTYVLRCSFLWKHNNKLNSLD
FT                 EMIKGVLCKIINCNLGDLSWEQCVLPVRFGGIGVRKASAVALPAFLASAHA
FT                 SCLIVGNVLNPCMGSVEIVGVSEAGSAWQSLCQADFPTLPHLQRLWDTPLC
FT                 QRIQQRLLQSYDNSVDIARFRAVTEKESSYWLQAYPSSNTGTLLDNNALSL
FT                 AIGLRLGAHINVPHFCVCGEYVNELGHHGLSCQKSAGRIPRHASLNDMIRR
FT                 ALTTVNVPAVLEPIGILRSDGKRPDGVTLIPWSVGRCLVWDATCVDTVAPC
FT                 HLDGTSSRPGSAAASAEITKKRKYSGLGSSYSFLPFAVETMGPWGPEAKXF
FT                 LTEISKRLKEVTHDAKAGWYFAQRVSLAVQRGNVASILGTVPPSSALEDLF
FT                 YCVG"
XX
SQ   Sequence 3812 BP; 1031 A; 701 C; 850 G; 1229 T; 1 other;
     tggcaacatt gcccgcgtaa acatcgctcg tacataaatt agcttttaaa aattgtaaac        60
     ctgtgatttt gtaaatataa tcactaaaat tcattgtacc tgtcctaaat atacagtaca       120
     agtgttttcg gtgacagaag ataaatataa gggtgtttcg taagaaagaa acgtttcgtc       180
     aaccttacgt acaaatcagc tgattaacag ctgtgtgttg tttacgttac aactagtgaa       240
     gtgaagtgtt tacgatatca atgcggcaga agaatctgaa cttggcagca atttgggtgt       300
     tttgtagcta tcaagtgtcc ccgtaaatca cacatccatc ttcgtaataa cggggtggct       360
     tgtgtgcagc attacatttg actacaagat accgtcgatc aagaaaaaaa tattattgtc       420
     aaaggaatac tttaccaaga aatatcaata tcataggaac attcacttca cgtgcaagca       480
     atacgcctgg tctagcggtg tgaactatga aatcaagtac gcagtgaagg agttaccgcg       540
     ttcgagccca tggttatatc gtcaaaatgt cgttttctat ttttatattt ttttattgtt       600
     ttttatttat ttaaagaata attaagtcaa tattgatgta aaattttaca aaattagttt       660
     aaattttatt tttttaattt gcaaaattga ttttattgac atgattttta gttattttgg       720
     attattattg ttatcattca aatatatttt attggtattg tttttaattt gacatattta       780
     aatggaattg ttatagcttt attactatta tcattttcta attttacttt tctacaatag       840
     ttattaactt agttagctac atgttaaaga ttttataata tgtttaaaat aatatgtctc       900
     actcacaacc gctaccgcca aatccgaata cttttcctgc tggtcttact caatgtgacg       960
     aatgtttacg gtattttaaa ggtaataggg gtctaaaaat tcatacaggt agaatccaca      1020
     aagctgagtc agttccaaat accctatgtc ctggttcatc gagggataat agggtttccg      1080
     tggtcccgtt atggaagaaa ctgagccttt ataaaaacaa ttcgccggtt gttaaacgag      1140
     ttcctcgtgg agccagggtt atggtggccg aggaacttaa aaaaaacatt gatcaagttt      1200
     tgcatgacaa taatgtcaca agttgggaag atcttttatc atttgcatat agaattttgc      1260
     atgtagataa acagagcaat aactcccatt cacttactaa aaaaattaag gataattgta      1320
     agaataattc caataagact ttgttggacg atggggtaaa ttatgacaag caacagcgtc      1380
     catttaataa agttgcaaaa attgagggga aagtgagtga tggagattta aagggtgcct      1440
     cacaactatt attttcatca gattctctag ctccgaataa tgccgacact cttctggcgt      1500
     tgaagtcgaa acatcctgca cctttaacac ctgttagtgt gccgccacca cagtcttcca      1560
     caactttgcc tcgtgtgtct cttgatgacg ttctcaccac aattacatct tttaaaaacg      1620
     gttcagcagg cggactggat ggtctatccc cgcagcattt caaggattta atcaatgttt      1680
     ctgctggtga tgtcgggcgg tctttactta aaagtatagt ctcgcttgtt aatttaatgc      1740
     tggcgggaag tgtacctgac agtatcgctg atattttgta tggagcgaat ttgtgtgctt      1800
     tgatgaagag agatggcggt attaggccta tcgctgttgg cggtacactg cgccgcattg      1860
     tatccaagct ttgctgcaaa gaggttctgc cgatattgag tgggatgttc cggccgatac      1920
     agttgggcgt cggtacaaag ggcggctgtg aagctgcggt acatgcggct cgcacctttc      1980
     ttaagggggg tggtgccgaa gtattggtga aggtggattt aaaaaatgca tttaattgta      2040
     tcgataggaa tgcttttctc aaagaagtga aggaacacat accatctatc tacccttacc      2100
     tttatcaatg ctatggtaat ccatctaagc tggtttataa ggagaacctt gtggaatcag      2160
     cgacgggttg tcaacaaggc gatccactcg gtccggcgat ttttagtttg ggaatacatc      2220
     cagttttgag ggagctgaag tccagcctaa atttatggta tctggatgac ggaacattgg      2280
     gaggggacat ttccacggtc ttaaaggatt tagaatatct aaaatctgct ttggccagtt      2340
     tgggtttaga gctcaatttt gctaagtgtg agctttttat caatgcctct tgttgttccg      2400
     taccagtttc tgacgttttt gcaaagttta ataccgcagc gcccaacata aaagttgttg      2460
     atgagaattc tctgatgttg ctgggtgctc ccattttgga tggatcgatc gacgcgtata      2520
     ttgatgagca gattgataaa ttttctcagt gttccaacaa tttatttgaa attaactctc      2580
     atatggcttt gttcatcata agacactgtc tattcgtacc taaatttaca tatgtgttaa      2640
     gatgttcttt cttatggaaa cataataata aacttaattc tttggatgaa atgataaaag      2700
     gtgttctgtg caaaataatt aattgtaatt tgggtgacct ctcttgggag caatgtgtcc      2760
     tgccagtacg ttttggtggt atcggcgtac gtaaagcatc agctgttgcg ttgccggcct      2820
     ttcttgcttc tgcacacgcc tcctgtctca tagtcggtaa tgttctcaac ccttgtatgg      2880
     gttccgtaga gattgtgggt gtgtcggagg ctggatcggc ctggcagtct ttgtgtcagg      2940
     cggattttcc tactttaccg catttgcagc gtctttggga cactccgctt tgtcaacgga      3000
     tacagcaacg gttactacag tcatatgata acagcgtgga cattgctcgt tttcgcgccg      3060
     ttaccgaaaa ggaatcaagt tactggcttc aagcctatcc atcgtccaat acaggcacgt      3120
     tgttggacaa caacgctctc tcgctagcta ttggcttacg gttgggggcc catattaacg      3180
     taccacattt ctgtgtctgt ggcgagtacg tcaatgagct tggacatcac ggactctcgt      3240
     gccagaaaag cgctgggcgc attccaagac acgcgtcttt aaatgatatg ataagaaggg      3300
     cgctcactac agtcaatgtt ccggctgtct tggaacccat cggaattttg aggtcagatg      3360
     ggaaaaggcc cgatggagtc acgctgattc catggtcagt tggtaggtgc ctggtatggg      3420
     atgctacttg tgtggatact gtggctccct gtcatttaga tggtacttcg tcccgccccg      3480
     gttcagctgc agcttcagca gaaattacaa aaaagcggaa gtattcgggt ttggggtctt      3540
     cttattcttt tttgcctttc gcggttgaga cgatgggccc ttggggccct gaagcaaaga      3600
     awtttttaac agaaatctcc aaacgcttga aggaggttac acatgatgct aaggctggct      3660
     ggtactttgc acagagagtg agtctggctg tccaacgagg caacgtagcc agtatcttgg      3720
     ggactgtgcc tccttcaagc gcgttggaag atctgttcta ctgtgtgggt tgagttatgt      3780
     taaattattt tgatttgact ttttgttaat aa                                    3812
//
ID   CRE-1_FoCa  repbase;    DNA;    INV; 4149 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4149
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2721-2721 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..4100
FT                 /product="CRE-1_FoCa_1p"
FT                 /note="PHD finger, RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MPLFKSLDIWKYVNLTLLPPLPPSSSSPPLPPSSSPL
FT                 PPSSSPLPPSSSPLPPSSSPLPPSSSPLPPSSSPLPPSSSPLPPSSSPLPP
FT                 SSSPLPPSSSPLPPSSSPLPPSSSPLPPSSSPLPPPSSSSPRPHPGPRKKR
FT                 NKQKKRTGPRKCPPPTSSRPLPHTTEGLNPVSDDLFCPVSGCPGPSSSATD
FT                 EWIECSACLLWYHTSCLLLQAIPEDDWFCANCPQIHTQIGPQVNSNTPSPA
FT                 NQSTLGTHSQITQSSPCTNPRASQPISTLSTPLSNFISSKATCTSLTLEWL
FT                 NNNIVPGGIIEKNLLHEAYRQDSLGIFKPLNDAEIGKLIKNSFSNIRTKRL
FT                 RTEFHGASKYHYVGIQLKSEQVPETVFDFKSIISSLRQNCPTLKQCPKACR
FT                 IPVAQSIKSAIDKCITENTPEAWHLLLTFPYVTLQCDSRANIKNGQSLNNK
FT                 IRNNLSIFESLDKNTYQDYLISLSSKNSVFDKSGSKINDIGPKVISKVSEG
FT                 NIRGAIRLLTSDDVVAPNSSATLDTLVEKHPQQSLDNFTVLDEPNIPPFTT
FT                 TTEQVISAIFSFPSGSAGGLDALRPQILKDLVSQHTGDVGTQLLESLTKFC
FT                 NFMLAGKVPLDICPFIYGASLTALKKKSGGIRPIAVGCTYRRIVSKICVKV
FT                 MNHVFQDYFSPVQVGFNVKNGAEAGAHAARRFFSFPHQSPTAFLKIDFKNA
FT                 FNMVDRGKLLSSVHELVPTLYPYINQCYRFSSSLVWNSSLIDSCRGVQQGD
FT                 PLGPPLFCLTLHPVISNLGSEFNMWYLDDGTLGGNPTTVLDDFQHIISCAN
FT                 EVGLELNFDKCEVSVLGPQTNTQCILESFQSVAPGISCMTQENAELLGAPL
FT                 TLESIEHVFRKKIHAFTNMAGRLHSIPSHIAYYLLKHSLAIPRLVYLLRAA
FT                 PIFKSPHLLEEFDSLLHNALEQITNCQINPLSLEEIALPIKLGGLGIRQSK
FT                 TLATPCFLASSFATTDLVSLILPSYVTALSDSLVTEAQDLWKSISCEELPR
FT                 STITSFQSSWESPIFNYVSSRILESSTTPINTARILASRSKESGAWLQALP
FT                 SRNLGTLLDDNSFRIAIGLRLGLNLCFPHKCVCGAQVDELGLHGLSCKKSA
FT                 GRHSRHTQANDIIKRALISADIPSIREPLGCCRTDGKRPDGLTLIPYKQGR
FT                 SLIWDFTCTDTFAPSYLSHTLRHAGTAAKLAETKKHKLYSELKTNYIFVPV
FT                 AIETSGVWGTEGLKFIQDVGRRMKDVTGPMSTTFLIQRISLAVQRGNAASI
FT                 MGAVPSQRGLEELFYILNDRSFYLQKSCKGPNGDLGRLSGSSKGFPNPPTS
FT                 GFSSTPQAN"
XX
SQ   Sequence 4149 BP; 1200 A; 982 C; 767 G; 1200 T; 0 other;
     ggtaacttac accggagata ctacttatct atcgttggaa gtccctctac tttcactctt        60
     gaattccgcc cccgtctata tattttaagc gtggaaggaa attgccagta ttgttggata       120
     caagtcgtca gaccacgatg ccgctcttca agtcactaga tatatggaaa tatgtaaact       180
     tgacgctact tcctcccctc ccgccatcat cgtcatcacc cccgctgccg ccgtcatcgt       240
     ccccgctgcc gccgtcatcg tccccgctgc cgccgtcatc gtccccgctg ccgccgtcat       300
     cgtccccgct gccgccgtca tcgtccccgc tgccgccgtc atcgtccccg ctgccgccgt       360
     catcgtcccc gctgccgccg tcatcgtccc cgctgccgcc gtcatcgtcc ccgctgccgc       420
     cgtcatcgtc cccgctgccg ccgtcatcgt ccccgctgcc gccgtcatcg tccccgctgc       480
     cgccgtcatc gtccccgctg ccgccgccat catcatcctc accacgacca catccaggac       540
     caagaaagaa gaggaataag caaaagaaga ggacaggacc aagaaaatgt cctcctccca       600
     catcctcccg accgctcccc cataccaccg agggtttaaa tcccgtttcc gatgaccttt       660
     tctgtccggt gtcgggctgc ccaggaccat catcttcagc aacagatgag tggatagaat       720
     gttctgcatg tcttttgtgg tatcacacct cttgtcttct tttgcaggcc attcctgaag       780
     atgactggtt ctgcgcaaac tgtccccaaa tacatacaca aataggcccc caagtaaact       840
     caaacacacc gtcgcctgca aatcagtcta ctctaggcac acatagtcaa attacacagt       900
     caagcccctg tacaaatcca cgtgcatcac aaccaatttc tacattaagt acaccacttt       960
     caaattttat atctagcaaa gcaacatgta catctctcac attagagtgg ctaaataaca      1020
     atatagtccc aggaggtata attgagaaaa atctgttaca tgaagcgtat agacaggact      1080
     cgttaggcat tttcaaaccc ttaaacgatg cagaaattgg gaaattgata aaaaattcat      1140
     tttcaaacat taggaccaaa agacttagga cagaatttca tggcgcttcg aaatatcatt      1200
     acgtagggat ccagttaaaa tcagaacaag ttccagaaac tgtttttgat ttcaaatcta      1260
     ttatttcctc tcttaggcaa aattgtccaa ctctcaaaca atgccccaag gcctgtagaa      1320
     ttccggtagc acaatcaatc aagtcagcca tagataaatg cataactgaa aacacaccag      1380
     aggcatggca ccttcttttg acttttccat atgtaacatt acaatgtgat tcaagggcaa      1440
     atataaagaa tggtcaaagt cttaacaaca aaattagaaa taatttatct atttttgaat      1500
     ccttagataa aaatacttat caggactatc tcatttcact ttcatccaaa aattcagtct      1560
     ttgataagtc aggtagcaaa atcaacgaca tagggccaaa agtcatatct aaagtttccg      1620
     aaggaaatat tcgtggcgcg atacggcttt taacatcaga tgatgttgtc gctcccaatt      1680
     cttcagcgac tttggacaca cttgtagaaa agcacccaca acaatcttta gacaatttta      1740
     ctgttttaga tgagcctaac attccaccat ttactacgac aacagagcag gttatctcag      1800
     caatattctc atttcctagt ggttcagcag ggggtttaga tgcattacga ccacaaattc      1860
     tgaaagatct agtttcacaa catactggtg acgtaggaac tcaattgtta gaatctctta      1920
     caaaattttg caattttatg ttagcaggaa aagttccttt agatatttgt cctttcattt      1980
     acggtgcaag tcttacggcc cttaaaaaga aatcaggtgg tattagacct atagcggtag      2040
     gttgcactta tcgtagaata gtttcaaaga tttgtgtgaa ggtcatgaat catgtctttc      2100
     aggattattt tagtccagtc caagtaggtt tcaacgtaaa aaatggtgct gaagcaggag      2160
     cacacgctgc ccgtagattc ttttcctttc cacatcaatc acctacagcc ttccttaaaa      2220
     tcgattttaa gaatgcattt aatatggtag atagagggaa attgctttca tccgttcacg      2280
     aacttgtacc aactttgtat ccttatatta atcagtgcta tagattctca tccagtcttg      2340
     tgtggaattc ttctttaatt gattcatgta gaggtgttca acaaggagat ccgttaggtc      2400
     caccactttt ctgtttaacc ttgcatccag tcatttcaaa tttagggtca gaatttaata      2460
     tgtggtactt agatgatggt acattaggtg gcaatcctac tacagtgtta gacgattttc      2520
     aacatattat ctcatgtgca aatgaagtag gtttagaatt gaactttgat aaatgtgagg      2580
     tttcagtttt aggtccacaa actaacacgc aatgtatact agaatctttc caatcagttg      2640
     caccaggtat ttcatgtatg actcaggaaa atgctgaact tttaggtgca cctttgactc      2700
     ttgaatctat tgaacatgtt ttccgcaaaa agattcacgc ttttactaac atggctggtc      2760
     gattgcattc cattccaagc catattgcgt attatctctt gaaacattca ctagctattc      2820
     cacgattagt ttatctacta agggcagccc ctatttttaa atctccacat ttgctagagg      2880
     agtttgattc attgctccat aatgccttag aacaaattac aaattgccaa attaatcctt      2940
     tgtctttaga agaaattgca ttaccaatta aattaggtgg tttaggaatt agacaatcta      3000
     aaacattagc aactccatgt ttccttgcat cttcatttgc caccactgac ttggtttctt      3060
     taattttgcc ctcgtatgtc actgctttgt ccgattcact tgtgaccgag gcgcaggact      3120
     tgtggaagtc aattagttgt gaagaactac ctcgcagtac aattacttct tttcaatcat      3180
     cctgggaaag tccaattttc aattacgtat cttcacgtat cctggaatca tccaccaccc      3240
     caataaatac tgctaggatt ttggcatcaa ggtcaaaaga atcaggtgca tggttgcaag      3300
     ctttaccatc gaggaattta ggcacacttt tagacgataa ttccttcagg attgcaatag      3360
     gtttgaggtt agggttaaat ttatgtttcc ctcataaatg tgtttgcggc gcacaagtag      3420
     atgaactagg cttacatggt ctttcatgta aaaaaagtgc tggcaggcac tctagacata      3480
     cgcaagccaa tgacattata aagagagcct taatttctgc agacatacca agcattaggg      3540
     aaccattagg gtgttgtagg acagatggaa aaagaccgga tggtctaaca ctaatacctt      3600
     acaaacaggg acgctcacta atatgggact ttacatgtac agacactttt gccccctctt      3660
     atctctctca cacacttaga catgctggca cagcagcaaa actagccgag accaaaaaac      3720
     acaaactgta ctctgaactt aaaacaaact atatctttgt tccggtggct atcgagacat      3780
     caggagtatg ggggacggaa gggttgaagt tcatccaaga tgttgggagg aggatgaagg      3840
     atgtcactgg accaatgtcg acaacttttc tcattcaacg gattagtttg gcagttcaac      3900
     gcgggaatgc ggcatcaatc atgggagctg tccccagtca acgaggatta gaagaattat      3960
     tttatatttt aaatgatagg tcgttttatt tacaaaaatc atgtaagggg ccgaatggtg      4020
     atctcggacg cctatccgga tcaagtaaag gttttcccaa cccaccaaca tcgggttttt      4080
     cctctactcc ccaagccaac taagtgtatt tcatagttta tcaatgttta tgttaataat      4140
     aaataatac                                                              4149
//
ID   CRE-1_PXu   repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-307
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3074-3074 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 307 BP; 61 A; 75 C; 94 G; 77 T; 0 other;
     gcagctgcgg cgacagccga aatcaataaa aggcgtaaat atgcggcgtt ggcagatccg        60
     tatatatttg cgccttttgc cgtggagacc ttggggcctt ggggtgcgga agcccgtcgc       120
     ctgtttaagg agatttccgc acgcctcatc gacgcctcag gggatccaag ggctggcgcg       180
     catttcgggc aaaggttgag cctggccatc caacggggaa atgccgccag cctcttggga       240
     accctaccgt gcgaccgcag cgatttgggg tcgatttttt atattattta gtttggttta       300
     gttttag                                                                 307
//
ID   Cre-2_BM    repbase;    DNA;    INV; 3534 BP.
XX
AC   .
XX
DT   14-OCT-2009 (Rel. 14.10, Created)
DT   15-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Cre-2_BM non-LTR retrotransposon - consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; Cre-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3534
RA   Kapitonov V.V. and Jurka J.;
RT   "First examples of CRE non-LTR retrotransposons in animals.";
RL   Repbase Reports 9(10), 2160-2160 (2009).
XX
DR   [1] (Consensus)
XX
CC   Cre-2_BM is a family of non-LTR retrotransposons that belong to
CC   the CRE clade. The silkworm genome contains >100 copies of
CC   Cre-2_BM that are ~99% identical to the consensus sequence. Most
CC   copies of Cre-2_BM are 5' truncated. The silkworm genome contains
CC   several families of Cre non-LTR retrotransposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..3333
FT                 /product="Cre-2_BM_1p"
FT                 /note="RT and RLE domains."
FT                 /translation="MNSPTRATCPHCPGSTRLFVVPRGLNVHISHMHKDSQ
FT                 IQPSILPRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKHIPKGARNL
FT                 VAGKLRVIMDGCINNNGVADWVSLLSFSYTTLRIPDRGDPRSLTAKVKENA
FT                 NNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLRGAVRLLVSEDSLAPFNDET
FT                 LSALRDKHPTPFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGLD
FT                 GLRPNHLKELISPSAGENGVRLLHSITDLCNFILRGTVNVQVCPYLYGGSL
FT                 CALTKKDGGVRPIAVGSVLRRLAAKLGCRSVRNEMASYLQPHQLGFGTALG
FT                 CEAAIHATRAFAMSRESCNSAIVKLDIRNAFNSLERDIILNEIKEKIPALY
FT                 PFLYQCYSSSSKLFFMESSIDSEVGAQQGDPLGPLIFSLAIHSIIKTVKSP
FT                 LNLWYLDDGTIGGPPDSVLDDIRLLFPKLRDVGLEVNTGKCEVYFSTEVSA
FT                 SVVNDFQELVPGIKVLNKSNFILLGTPIFQDGVPSSLEIKRQLLSSLRGNL
FT                 LSLSSHVALVLLRCCFSMPRLTYLVRTCPTWLFTQDVAQLDALLRDTLEAI
FT                 LNVSLDDRQWCQAVLPIRHGGLGVRQMERTGLAAFLASCYGVVDFVAKLLG
FT                 TNGDGSTIPFASEALAAWGLLCPNEALPVNRSSQRCWDDVLCKLTLSTLLG
FT                 DAAGVELARLKAVSSPESGAWLQALPSPQLGTLLDNNSLRVATALRLGCSI
FT                 CEPHRCVCGSMVDAAGLHGLSCVRSAGRFPRHHALNDIIRRALVSANIPCV
FT                 LEPPGLSRSDGKRPDGLTLIPWEKGRCLLWDATCSCTYAACHLSGTRQCAG
FT                 FAAEASAKTKHAKYDALKSTYLFVPVAVETTGVWSSEAKKFIAAIGHRLRG
FT                 QGHDPRSGSYLVQRLSIAIQRGNAASVMGTFGPGAIQSGLFD"
XX
SQ   Sequence 3534 BP; 837 A; 686 C; 855 G; 1155 T; 1 other;
     ttttatttta ttttttaaga ttttagtgtg gacgtcattt tattgtaacg ttatagatat        60
     aaaaaaaata tattggataa ttgatwctat ttaattatta tttgtggaat tagttttatt       120
     ttattagcct gtatgacatt ttatgtaatc ttgatgttaa ttaatattct ttgtgctatc       180
     gcacctttgt ggatttgtta gataggtatt caaataattt ttttgtatgt tgtttttata       240
     atttaatttt gttttattat gaatgaatgt acttatcgtt tttttttttt ttttttttaa       300
     atacttttta attattatta ttttttattt atttactttt tacttttgca aatgccaaaa       360
     ttatttacct acttttgtct tattttttgt gcaattgacg aaactgctgg tggataatat       420
     taaatgataa attgaatttt gttgttatta atgttatata acatatttta taattattta       480
     tatcgatttt aaataatgaa tagtcccaca agggcaacat gccctcattg tccgggttcc       540
     acacgccttt ttgtggtgcc ccggggtcta aatgtgcata tttctcatat gcataaagac       600
     agccagatac agccgtcgat actgcctcgg gtgccgtgtg ctgtaactgc tgatgctcat       660
     tcacaaaccc agagtgttat ccatactctg gacgatttgg catcttacaa aaataaaatt       720
     cctgtgctta agcacatccc taagggggcc aggaatttag tcgcaggaaa gctcagagtg       780
     attatggacg gctgcataaa caataacggt gtggcggact gggtttcctt gttgtcattt       840
     tcttacacga ctctgagaat tccagatcga ggtgaccccc gttcgcttac tgcaaaggtt       900
     aaggagaatg caaacaataa tagcccgtat tttttagagg acttcaaaca caagccacga       960
     tccattgtca aaagaatcga agccaaggtt catgagggtg atttgcgtgg agctgtccgt      1020
     cttttagtgt cggaggattc tttagcacct tttaacgatg agaccttaag cgcattacgt      1080
     gataaacatc ctactccttt tcgtccctta tcattgccgc cagcgcctga ttctagttgc      1140
     ccttttttga ctgtcaactc ggaggatgtt gcagacgcaa ttagttcctt ttatagcggc      1200
     tctgcacctg gccttgatgg tctacgtcca aaccatttaa aggagctcat ttccccttcc      1260
     gccggtgaaa atggtgttcg tctattgcac tcaattacag acttatgcaa tttcatacta      1320
     agaggtacgg ttaatgtaca ggtgtgtcct tatttgtacg gaggtagctt atgcgctcta      1380
     actaagaagg acggcggtgt gagaccaatt gcggtggggt ctgtgctgcg tcgtctcgct      1440
     gccaagcttg ggtgtcggtc tgtaaggaat gaaatggcct cgtacttgca gccccaccag      1500
     ctgggcttcg ggactgctct tgggtgtgag gccgccattc atgctacccg tgcatttgct      1560
     atgagcaggg agagctgtaa cagtgcaatt gtaaagcttg atataaggaa tgcttttaat      1620
     agcttagaga gagatataat tttaaatgaa atcaaggaaa agattccggc tttataccca      1680
     ttcttgtatc agtgttacag ctcttccagc aagttattct ttatggaatc ttccattgac      1740
     tcagaggtag gtgcccagca gggcgatcct cttggcccat taatttttag tcttgctatc      1800
     cacagcatta taaagaccgt caagtcacct ttaaacctat ggtatttaga tgacggcaca      1860
     ataggtggtc ccccagattc cgtgctagac gacatcagac ttttatttcc gaagttgcga      1920
     gatgtcggct tggaggttaa tactgggaaa tgtgaggtat acttttctac tgaagtatca      1980
     gcaagcgtag ttaatgattt tcaggagttg gttccaggta tcaaagtttt gaataaaagt      2040
     aatttcattt tgcttggtac tccaatattt caggatggag ttccaagttc tctggaaata      2100
     aaaaggcagt tattgtcgtc attgcgcggc aacctattga gcttatcatc tcacgtggct      2160
     ctcgtcttgc ttcgttgttg cttttcgatg cctcgtttga cgtatttggt gagaacttgt      2220
     ccaacgtggc ttttcactca agatgtggcc cagcttgatg ctttgttgag ggatacactg      2280
     gaggctattt taaacgtaag cttggatgac agacaatggt gccaggctgt tttacctata      2340
     cgtcatggcg gcctgggggt gcgacagatg gagcgtactg ggctcgctgc tttcctggct      2400
     tcgtgttatg gggttgtaga ctttgttgct aagttactgg gtacgaatgg tgatggatct      2460
     acgattccgt ttgcgagcga ggctttggcg gcttggggcc ttttatgtcc gaatgaggcg      2520
     ctcccggtga acaggagctc gcagaggtgt tgggatgatg tgctgtgcaa gctgactttg      2580
     tcaactttgc taggagacgc cgctggagtt gaattagcgc gcctgaaagc ggtctccagt      2640
     ccggaatctg gtgcttggtt gcaagcattg ccttcaccac agctggggac acttcttgat      2700
     aataattcat tgagagtggc cacagctttg agactcggtt gcagcatttg cgagccccat      2760
     cgatgtgtct gtggtagtat ggtggatgcc gccgggctgc atggactgag ttgtgttaga      2820
     tcggctggcc gcttcccgag acaccatgca cttaatgata ttattcgacg tgctttggtc      2880
     tccgcaaata tcccgtgtgt gttggaacca ccaggcctca gcaggtcgga tggtaagagg      2940
     ccggatggtt tgactctgat tccttgggaa aagggacgct gcttgttatg ggacgcaacc      3000
     tgtagctgta cgtacgcggc gtgtcattta tctgggaccc gacaatgtgc gggctttgct      3060
     gctgaggcgt cggctaaaac gaagcatgcc aagtacgatg ctctgaaatc tacatacctg      3120
     tttgttccag tggcagtgga aacgacgggt gtgtggagtt cggaggccaa aaagtttatt      3180
     gccgcaattg gccaccgcct cagagggcaa ggccacgatc ctcggtctgg gtcgtacctg      3240
     gttcagagat tatccattgc catacagcgt ggcaatgctg ctagcgtaat gggtactttc      3300
     gggccgggtg cgatccagag tggcttgttt gactagccga tgcctacgcg cgcattgctg      3360
     ttagcgtgga cctttatgtt acatatgacg acgcttgcag ctgaaagtaa gtattgtact      3420
     ttttgacgaa gcatgttgct gataacttta tttctgtaat ctgacgaagc atgttgcgga      3480
     taataacatg tacttttagg ttaggaatat tgtgttcttt ttttttataa taaa            3534
//
ID   CRE-2_FoCa  repbase;    DNA;    INV; 3401 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3401
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2722-2722 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..3336
FT                 /product="CRE-2_FoCa_1p"
FT                 /note="PHD finger, RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MANDLHCPIPTCPGPSDTEDDNWIFCEQCTSWFHSKC
FT                 VGVVVIPEEEWICLVCISLNSTSSQLSSTANDDPTNHPVQAETSNPTRISK
FT                 KDIIIAARLWLQENLVEDPESKIAKAEVSLRYTQHVEIKGEGRVAISTLGK
FT                 YIFKLFPQTTTCRPGARGTTNSAYKGIRWTDASQPPRQNHEDLGFVFSKLK
FT                 GTVPTLRPVPKGARISVAEALTNILEEVINKNDAESWNKLFTFPYAVLTVP
FT                 AKSEKVTNLTSWVKMRVSKWKTDPTTTIPTGRQPSPSIHKPQQSQQMISKK
FT                 VEAKLSDGDIRGAIRLLCSDDTVAPYNQSTIDSLLDKHPPHPEPLNFPVMP
FT                 DVDEHPAEATEEEILATISSFPPGSAGGLDGLRPQILKDLVGISTGDTGMK
FT                 LVKTICSFADVVLCGKVPDVVCPTLFGASLTALNKKSGGIRPIAVGNTWRR
FT                 LVSKIVVTRITPQLVDYFSPHQLGVGIKGGAEIGAHAARRYWSHAHDTAKA
FT                 FLKLDFRNAFNEIRRDSLLHIIKQRIPSIYSFINQAYAHPSSLFYGNILIP
FT                 SLLGVQQGDPLGPGLYSLVIQPIIEAVTTEFNVWYLDDATIADIPEKVLHA
FT                 FDTIRTMGEDVGLHLNYEKCEVGVFGGNPDTHDAIYDEFHKASPGIKIISP
FT                 EVATLLGAPLTDEAIERVMESKISQLAAFGNRLLQLSAHSAFFLLRASISI
FT                 PRLIYFLRCAPSWRNHASLLAYDNTLKLVLEGITNCFLSPESWIQSSLPVS
FT                 KGGLGTRHAVSTAIPCFLASAHSCLPHLESLLPDYIRDQDDAISEGEELWS
FT                 ADYRQLPLPELRGKQAIWEAPLIEHRQKTLLDNTSTPQDKARLLALDRPYV
FT                 GAWLNAIPAPQLGNHLSNEEFRVAIALRLGCAICQPHKCICGAEVSSSGYH
FT                 GLSCRKSAGRWSRHSAANDVISRALRTAEVPSIREPVGCCRTDGKRADGMT
FT                 LIPWSRGKALVWDFTCVDTFAPSYLSSTSGHPGAAAVLAEKKKKTLYSFLE
FT                 DRFIFIPVAAETIGVWGEDGIKLIQHIGQRITTITGEIRATSYLLQRLSIT
FT                 LQRGNVASILGTLPTGKKLSEIFYL"
XX
SQ   Sequence 3401 BP; 979 A; 876 C; 709 G; 837 T; 0 other;
     atctaagcat ctcgaaggtc agtggccgcg gaagatgatt tgaacgcgga agataataat        60
     ccatattctc taaacatata acaagtgaaa atggcaaatg acctccactg tcccattcct       120
     acctgccctg gaccgagtga tactgaagat gataactgga tattctgtga acaatgcaca       180
     tcatggtttc actcaaaatg tgtaggcgtt gttgtcattc ctgaagaaga atggatttgt       240
     ctagtttgca tctctctcaa ctcaacctct tcacaacttt catctacagc taatgatgac       300
     cccactaatc atccggttca agcggaaaca agcaatccta cccgaataag taaaaaggac       360
     atcattatcg ccgcacgcct ttggctccaa gaaaatttag tcgaggatcc agaatccaaa       420
     atcgccaagg ccgaggtctc actccgctac actcaacatg tagaaataaa aggagaagga       480
     cgagtcgcca tttccactct tgggaagtat attttcaaac tctttcctca gacgactaca       540
     tgtcgcccag gagctcgggg aaccacaaac agcgcatata aggggattcg ctggacagac       600
     gcttcacaac caccccgtca aaatcatgaa gatttgggct tcgtgttctc aaagctcaag       660
     gggaccgtac caacattacg gccagtacca aagggggcac gaatatctgt cgcagaagct       720
     cttaccaaca ttttagaaga agttattaat aaaaatgatg cagaaagttg gaacaaactc       780
     ttcaccttcc cttatgctgt cctcaccgtt ccagctaaat ctgagaaagt gacaaacttg       840
     acatcgtggg tcaaaatgag agtttcaaaa tggaagaccg accccacaac caccatcccc       900
     actggtcgac aaccaagtcc atcaatacat aaacctcagc aatcccaaca aatgatttca       960
     aagaaagtgg aagcaaaact ttctgacgga gatatccgag gggccatccg tctcttatgc      1020
     tcagatgaca cagtcgctcc atataatcaa agcacgattg actccttact cgacaaacat      1080
     cctccacatc ccgaaccatt gaattttcca gttatgcctg acgtggatga acacccagca      1140
     gaagcaaccg aagaggaaat tctagccaca atttcatcgt tcccaccagg gtcggccgga      1200
     ggtttagacg gacttcgtcc tcaaatttta aaagacctcg tggggatatc tacgggtgac      1260
     acagggatga agctagtgaa aacaatttgt agctttgcag atgtcgtcct ctgtggtaag      1320
     gtcccagatg ttgtttgccc cacactgttt ggagcctcgc tcaccgccct caacaagaaa      1380
     tctggaggaa ttagaccgat cgctgttggg aatacatggc gtcgacttgt ttcgaaaatc      1440
     gtggtcactc gcattacacc gcaattggta gactactttt ctccccatca acttggtgtc      1500
     ggcataaaag gaggagccga aattggagct catgcagcac gtcgatactg gagccacgcc      1560
     cacgacactg caaaagcctt tttgaaatta gacttccgga acgcgtttaa tgaaatacga      1620
     cgcgattccc ttcttcatat tatcaagcaa agaattccat ccatctactc ctttatcaat      1680
     caagcttacg cacatccatc aagtcttttt tatgggaaca tactcatccc ctcccttctc      1740
     ggcgtccaac aaggtgaccc acttggtcca ggtctgtatt ccctcgtaat ccaacccata      1800
     atcgaagccg tgacgacaga attcaatgtc tggtatctgg atgacgcgac aatcgccgac      1860
     atcccggaga aagttctaca tgcatttgac accataagaa caatgggcga agacgtggga      1920
     ctccatctca actatgagaa atgtgaagtt ggagtttttg gaggcaatcc cgatacccac      1980
     gacgccatat atgacgaatt ccacaaagca tcccctggca tcaaaattat ttccccagaa      2040
     gtagctacat tgctgggtgc ccctctcacc gacgaagcga tagagagagt catggagtcg      2100
     aagatttccc agctagcagc atttgggaac cgcctccttc aactttccgc ccatagtgct      2160
     ttcttcttgt tacgagcctc catatcaatt ccgcgactaa tttacttcct acgatgtgca      2220
     ccgtcttggc gaaatcatgc ctctcttttg gcttacgata acaccctcaa gttggtcttg      2280
     gaaggaatca ctaactgttt tctatcccca gagtcttgga tacagtcgtc tcttccagtc      2340
     agtaagggag gtttgggaac cagacatgct gtgagcacgg cgattccgtg ctttcttgcg      2400
     tccgctcata gctgtttgcc acatctcgag tccctccttc cggactacat acgtgaccaa      2460
     gatgacgcca tatcagaagg tgaagagctc tggtccgcag attatcgcca actaccacta      2520
     cccgaattgc gaggaaaaca agctatttgg gaggctcctt taatcgaaca tcgccagaag      2580
     acacttcttg ataacaccag cacaccgcaa gataaagctc gtctacttgc tctagacaga      2640
     ccatacgtcg gagcctggct gaacgcaatc cctgcaccac aacttggaaa ccacctctct      2700
     aacgaagaat ttcgtgtggc catcgcactc agactcggct gtgcaatttg ccaaccacat      2760
     aaatgtatct gtggagccga agtatcctca agtggttatc atggtctatc gtgcagaaag      2820
     agcgctgggc ggtggtcaag acacagtgcc gcaaatgatg tcatttcccg tgcccttcgt      2880
     accgcagaag tcccctcaat aagagagcca gtgggatgct gccgaactga cggaaaacga      2940
     gctgatggga tgacacttat tccatggtca aggggaaaag ctttagtctg ggacttcacg      3000
     tgcgtcgata cctttgcccc atcgtacctc tcctccacgt ccggtcatcc tggggctgcg      3060
     gccgtgttag ctgagaaaaa gaagaagaca ctatactctt tcttagagga tcgtttcatt      3120
     ttcatcccgg tggctgctga aacaattgga gtttggggtg aagatggaat taaactaatt      3180
     caacatattg gacaacgaat cacaacaatt acaggagaaa tacgagccac aagttattta      3240
     ttacaacgtt taagcattac tctacaacga ggaaacgtcg cctcaattct gggtaccctt      3300
     cctaccggaa agaaactcag cgaaattttt tatttatgag ttttccatgc gtacttatta      3360
     atcattgtta acaaaagact ctgtaaataa aagcaacatt a                          3401
//
ID   CRE-2_PXu   repbase;    DNA;    INV; 554 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-554
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3075-3075 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 554 BP; 143 A; 127 C; 135 G; 146 T; 3 other;
     ctgtcttgcc aaaaaagtgc asgccgcttc tcgagacatg ccgcactcaa cgatatcata        60
     cgtcggtckc ttgccaccgt caacgtgcca agtctacttg agccgactgg tgtagcaaga       120
     gacctgacgg tatgagtttg attccatgga agatgggtcg ggtgctggta tgggatgcaa       180
     cctgttcaga cacgctggcc ccttcccatc tacatggaac caacaacaga gcgggtgcgg       240
     cttgtgaagc ggctgaaaat gcaaaagcat gcaaatacag gggtctaggc tccgaatatc       300
     attttgtccc attcggcgtc gagacccttg gtccgtgggg tcctagcgct ttaagacttt       360
     ttaaggacat wtccaaaaaa ttaatcgaca tcacagggga ccgaagagct ggcagctacc       420
     tcggtcaaag aattagttta gctgtacaga gggggaacgc tgccagtatc ttcgggacct       480
     tgcctaaagg gactcctttt aataacatat tttagtaaat tattcggttt ttttaatatt       540
     ttattttata tcat                                                         554
//
ID   CRE-3_FoCa  repbase;    DNA;    INV; 3361 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3361
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2723-2723 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..3287
FT                 /product="CRE-3_FoCa_1p"
FT                 /note="PHD finger, RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MMTPTSTTAANLSTHDDQHCPISTCPGASNTDQWILC
FT                 DHCQKWYHTACVAVVIIPEEEWLCPTCVISVTSSQSQVTPSSLNTTTTTKK
FT                 KHIIATTQYWLKSNLVEDPLGLIPKSEIVARYAHHIQTSGEGRVVDATVGK
FT                 YILQLFPSTKFSRPPTRGAANAYIGIRWKDQPPLLPHAPRNWGAELSQLKN
FT                 TVPTLRRVPKGARMEVAKALAKIIEEVTTTNSEESWFKLFSFPYAVVPVPT
FT                 KSDKVKNLTTWVKSRVLQWSITQIVTPSRPRPQFAKPSRPQETIAKKVEAK
FT                 LADGDVRGAIRLLTSDDTIAPNNQETLDALITKHPPHPEPTYFPNAPDKAE
FT                 VLAPVDPKEVLIAISSFAPGSAGGLDSLRPQILKDLVISENGEPATNLLNA
FT                 MLKFLDLVLRGDVPKSICPIFFGASMTALRKKTGGIRPVAVGNTWRRLISK
FT                 IAVARMSSTLVEIFSPHQLGVGIKGGAEAAAHAARIYWNYSHDSPKAFLKL
FT                 DFRNAFNEIRRDTLLQIIREKFPNFYRFVSQAYSSPSEIFFAGTPISSLCG
FT                 VQQGDPLGPALYALVIQPIVDLIDTELNMWYLDDSTIADSPEKVLMAMQTI
FT                 TRMGTEVGLHLNTTKCEVGILGVVDDQTRDEIFELFRSTAPGIQKISPESA
FT                 MLLGVPLTDEAIPTILGAKTEEMEKISTRLLKLSSHSAFFLLRASISTPRL
FT                 IYFLRCAPTWRRFDALTLYDAKLKNAMEGIINCSLSPQSWLQSSLPVNKGG
FT                 LGVRHAIDVAIPCFLASIYSSLPLAERLLPPHLHGIDTAIQEGEERWKSLG
FT                 SSPLPPLEIRGIQAIWEIPQQEGVINHLTTNATTLEDKARYHAMSQPNVGA
FT                 WLNAIPSPQLGTHLPNETFRIAAALRLGCDICQPHKCSCGEQVSTKGYHGL
FT                 SCKNSAGRHSRHAAANDVIARALRSAGVPIIKEPAGCAREDGKRPDGLTLI
FT                 PWARGKSVVWDFTCSDTFAPSYLPQTSIRPGVAAEKAEDRKKKRYEQLMDS
FT                 FLFVPIAIETTGIWGKDGLSFIKEIGSRITNITEEKRATSFLLQRMSITVQ
FT                 RGNVASILGSLPKGHKLEEIFML"
XX
SQ   Sequence 3361 BP; 989 A; 884 C; 680 G; 808 T; 0 other;
     aatttttcaa aaaaaaaaat aaaacgccca aaaatataga gaatgaaatg atgacaccaa        60
     cttccaccac tgctgccaat ctctccaccc atgatgacca acattgcccg atatccacat       120
     gcccaggagc tagcaacaca gaccaatgga tactatgcga ccactgccag aaatggtatc       180
     acacagcatg tgtcgccgtg gtcatcatac cggaggagga atggctttgt ccaacttgcg       240
     tcatatccgt cacatcttca caatctcaag tcactccatc atccctcaac acaacgacta       300
     ccaccaagaa aaagcacata atcgccacaa cacaatattg gctgaaatcc aacctcgttg       360
     aagatcctct cggcctaatt ccaaaatccg aaatagtcgc acgttacgcc catcatattc       420
     aaacatcggg agaaggaaga gttgtcgatg ccaccgtggg aaagtatatt cttcaactct       480
     tccccagcac aaaattttct cgtcccccga ctcgaggcgc agccaacgca tacattggaa       540
     tcagatggaa ggatcaacca ccactactcc cacatgctcc aagaaattgg ggtgctgagt       600
     tatcgcaact gaagaataca gtacccacgc tgagaagagt cccaaaaggt gcaaggatgg       660
     aagtagctaa agcccttgca aaaataatag aggaagtgac caccacaaac tcggaggaat       720
     catggttcaa acttttctcg tttccatacg cagtcgtccc tgttcccacc aaatctgaca       780
     aagttaaaaa tttaacaaca tgggtgaaat caagagttct gcagtggtca ataacccaaa       840
     ttgtaacacc ctcgagacca cgaccacaat tcgccaaacc ctcacgtcct caagaaacta       900
     ttgcaaagaa ggtggaagca aaattggcag acggcgatgt acggggtgca attcgtttat       960
     tgacctctga tgacacaatt gccccaaata atcaagaaac cttggatgcc ctcatcacta      1020
     agcatccccc acatccagag ccaacttatt tcccgaacgc accggacaag gcagaagttt      1080
     tggcccctgt tgatcccaaa gaagtcctca tcgcaatctc tagtttcgct ccaggatcgg      1140
     caggaggact tgactctctt cgccctcaga ttttgaagga cctcgtcatc tcagagaatg      1200
     gagaacctgc gaccaattta ctaaacgcga tgctaaaatt tttagatctt gttctcaggg      1260
     gagacgtgcc aaaatctatt tgcccaatct tcttcggggc ttccatgacc gcacttagaa      1320
     agaaaactgg gggcattcgt cctgtcgctg tcggcaatac atggcgtcgt ctcatctcga      1380
     aaattgccgt cgcccgtatg tcatctactc tggtcgagat tttctcccct catcaactag      1440
     gagtggggat taaaggaggc gctgaagctg cagcccacgc agcacgtatt tactggaatt      1500
     actcacatga tagccccaag gcttttttaa aattggactt ccgtaatgct ttcaatgaaa      1560
     tccgacgaga cacacttctc caaatcattc gagaaaaatt cccaaatttc taccgtttcg      1620
     tgagccaggc ctactcctcc ccctcggaaa ttttcttcgc gggaacaccc atctcctccc      1680
     tttgtggggt tcaacaaggt gatccactcg gaccagctct ctacgctctc gtgatccaac      1740
     caattgtgga cttgattgac acagagctga atatgtggta cttagatgac tcaaccattg      1800
     ctgattcgcc ggagaaagtc ttaatggcaa tgcaaaccat cacacgtatg gggacagaag      1860
     tcggtctgca ccttaacact acaaaatgtg aagtgggaat tctgggtgta gtcgacgacc      1920
     aaactcgtga cgaaattttt gagctatttc gttcaacagc tccggggata caaaagatct      1980
     ctcctgaaag tgctatgctg ttaggtgtcc cactcaccga tgaagccatt cctacaatac      2040
     taggagccaa aaccgaggaa atggaaaaaa ttagcacgcg gctactcaaa ctctcctccc      2100
     actcagcctt tttccttctc cgtgcctcca tctcaacacc tcgtctaata tactttctcc      2160
     gctgtgcacc gacatggaga agatttgacg cccttactct ttatgatgcc aaattaaaaa      2220
     atgctatgga gggaatcatc aactgttccc tttcccctca atcctggtta cagtcctctc      2280
     tacccgtcaa caaaggtggt cttggggtca gacacgctat agatgtggcg attccgtgct      2340
     ttctagcgtc tatctatagc tccctgcctc ttgcggaacg cctacttcca ccacatttac      2400
     atggcatcga taccgccatc caagaaggag aggaacgctg gaaatcactt ggttcatcgc      2460
     cacttcctcc actcgagata cgaggtatcc aggcaatatg ggaaatacca caacaggaag      2520
     gtgtaatcaa tcacctcaca actaatgcga ctacattaga agacaaagcc cgctatcacg      2580
     ccatgtcaca acccaatgtt ggagcgtggc tcaacgctat cccctctcct caactcggca      2640
     cacatcttcc taatgagacg tttcgcatcg ccgccgctct tcgactaggc tgtgacatct      2700
     gccagcccca caaatgttct tgtggtgaac aagtgtccac gaaaggctat catggtctca      2760
     gttgcaaaaa tagtgctgga cgtcactccc gtcatgccgc agccaacgat gtcatcgcca      2820
     gagccctcag atctgcagga gtccctataa ttaaagaacc agccgggtgt gcccgtgaag      2880
     atgggaaacg tccagatggt ctcacactta ttccatgggc aagaggaaaa tcggtagtgt      2940
     gggacttcac gtgttccgat acatttgcac catcgtacct cccacaaact agtattcgcc      3000
     caggagtagc agctgagaaa gcagaggacc ggaagaagaa aagatatgaa caacttatgg      3060
     acagtttcct ttttgtccca atagccatcg aaacaacagg gatttggggt aaagatggct      3120
     tgtcatttat taaagaaatc gggtccagaa tcacaaacat cacagaagag aagagggcga      3180
     catccttttt attgcagaga atgagtatca ctgttcaaag agggaatgta gcatccattt      3240
     taggatccct tccaaaagga cacaaactgg aggagatatt tatgttataa agaatttcat      3300
     ttatatatct attgtagtta tgctaatatt atggattaca attatgtatt atgataaagt      3360
     a                                                                      3361
//
ID   CRE-5_FoCa  repbase;    DNA;    INV; 3919 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3919
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2724-2724 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           529..3786
FT                 /product="CRE-5_FoCa_1p"
FT                 /note="RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MSSRDGILGDPPDNESQPPGDTSSAPPRPKGRHRKSL
FT                 MDRDFSAIGSVEEETSTNEVVSPVPQVHAIGSTPFDTSSLSVPTRRRTSVS
FT                 PSSPGVTKKDTFLSARRWIQQSLIPDXNSRIRKADVFSRYAVFVDESGEGG
FT                 VAETTLGKYIKELLPDVVSRRTTGADAHTFYEGMRWVDSPQSGEAVPHDWG
FT                 EVLSRLKMTTPTLRRVPKGARMEVARALTKVLEEVTTTKTEESWGKLFLFP
FT                 YVSLPVPQKTDKVKNLTTWVKSGVARWLLEQAAPPPRLPRPPAKPPREMEN
FT                 VTKKVEAKLADGDIRGAIRLACSDDTIAPRSQETVDALFSKHPPHPEPTAY
FT                 PEPLNNSEPPTVDPIEITTAISSFPPGSAGGLDSLRPQILKDLVATGQGEV
FT                 GEKLLEAIVNFINVVLSGNVPVPFCPIFYGASLTALKKKTGGIRPVAVGNV
FT                 WRRLSAKIALKRMSPDLVEYLAPHQLGVGIRGGAEAAAHAARIYWGHAHTT
FT                 SKAFLKVDFNNAFNEIRRDTILYIIHERFPSMFSFLSQAYSFPSQLYYGDT
FT                 PISSRRGAQQGDPLGPALFALVVQPIILAVETELNLWYLDDATIADTPEKV
FT                 LVALDTIIRMGEEVGLRLNTAKCEVGVLGADEHSRLEILERFRRAAPGIQE
FT                 ISPEAAVLLGAPLTDESIEAVLGAKAEQLATLGARLLHLSSHSAFFLLRAS
FT                 VSTPRLIYFLRCAPTWRRFDSLTLYDAKLKESMEGILNCFLSPQSWLQSSL
FT                 PVSEGGLGVRRAVDVAIPCFLASAYSALPLVERLLPPYLHGTDTAQQEGEE
FT                 RWNPMGPAELPPLEVRGIQAAWEKPQQEAAIKHLKNSAPTPEDKARLLAMG
FT                 QPHVGAWLNVIPSPQLGTLLPNETFRVACALRLGCDVCHSHKCPCGAEVTT
FT                 KGYHGLKCKRSAGRYSRHTAANDVIWRALRSAGAPAIKEPPGCSRQDGKRP
FT                 DGLTLVPWARGRPLVWDFTCSDTFAPSYLPQTCVHPGAAAERAEDAKIKKY
FT                 EFLQDRFLFVPVAIETIGVWGKEGLSLIKEIGSRITIVTEEKRATSFLLQR
FT                 MSIAVQRGNVAAILGSLPAGRELDEIFYL"
XX
SQ   Sequence 3919 BP; 910 A; 1061 C; 1023 G; 924 T; 1 other;
     cagggggagc aggagagagc acgtcccttt tttgctctcg tagaatattt tttcgtgtta        60
     aagttttaga ggttcctgac cacccccacc tctagaaagt tgattgccac ttccccatta       120
     agccctctgg agtagtgata gtggaagttg ggggattttg ctcgccttgg tgacctttta       180
     ggcctcgtcg gatttagtac ttttttgact ggacttacac ccctatgttc tcgagtggac       240
     tcgtttctct ctctactagt cttaccacgg aggataccac tactcagtag tggaggagtg       300
     tggtccctgc acccccaggg cacggcgcgg agttctgagt gaccgtgacc tgcggggttg       360
     gccatactca tgcactttat gtgcctgaat caggcaagaa agttttttca ttctttcttt       420
     ttcggggaca acggaaaaaa atgcgtccaa ataaatactg atatttttct tgtccctgtg       480
     tgagtccaat tggcctctct tcgcgcgcag ggcccggtac aggtcgccat gtcgtcacgt       540
     gatggaattt tgggtgatcc tcccgacaat gaatcacaac caccggggga cacgtcgtca       600
     gcgccaccac gacctaaggg ccgccaccga aaatcgctca tggaccgcga cttctcagcg       660
     attggttctg tagaggagga aacttctacg aatgaagttg tttcccccgt ccctcaagtt       720
     catgcaatcg gttctactcc gttcgacacg tcatccctct ccgtcccgac tcgccgccga       780
     acgtcagtgt caccatcttc ccctggtgtg accaagaagg atacatttct ctcagctcgc       840
     cggtggattc agcagtccct aatcccagat mcgaactcgc gaataaggaa ggcggatgtt       900
     ttctcccgct atgcagtttt tgttgacgaa tcgggagagg gtggagtcgc cgagaccacc       960
     cttggaaaat atatcaagga gttgttgccc gacgttgtca gtcgtcgaac aactggagca      1020
     gatgcccata cattttatga aggcatgcgg tgggtcgact caccacaatc tggggaggca      1080
     gtgccacacg attgggggga agtcttaagt cgactcaaaa tgaccacacc cacactgcga      1140
     cgagttccaa aaggggcgag aatggaagtt gctcgtgccc taacgaaggt tttggaggag      1200
     gtgaccacaa ccaaaaccga agaatcatgg ggcaaactat ttctattccc ttacgtaagc      1260
     cttcccgttc cccagaagac cgacaaggtc aagaatttga cgacgtgggt caagtcagga      1320
     gttgcccggt ggttgttgga gcaggcagcc ccaccgccac gactcccacg acctcccgcc      1380
     aagccccctc gagagatgga aaatgtgaca aagaaagtgg aggcgaaact ggcggatggt      1440
     gatatccggg gggcaattag acttgcctgt tccgacgaca cgatagcccc aaggagccaa      1500
     gagacagttg atgcgctttt cagtaagcat ccgccacacc cggaaccaac cgcatatccc      1560
     gaaccactaa ataattcgga accaccaacg gtggacccta tagaaatcac caccgcgata      1620
     tcaagctttc cgcctgggtc agcggggggc cttgattccc ttcgcccgca aattttgaaa      1680
     gaccttgtcg ccactgggca gggggaagtg ggggaaaaat tacttgaggc tatcgtaaat      1740
     tttataaatg ttgttctcag cgggaatgtt ccagtccctt tctgcccgat tttctacgga      1800
     gcttccctca ccgctctaaa gaagaaaact ggcgggattc ggcccgttgc ggttggaaat      1860
     gtatggcgcc gcctttccgc taaaatcgca ctgaaaagaa tgtcccccga ccttgtggag      1920
     tacctagcac cccatcaact gggggtgggg ataagggggg gtgccgaagc ggcggcacat      1980
     gcggcccgca tctattgggg acacgcccat acgacatcta aagccttttt gaaagtcgac      2040
     tttaacaacg ccttcaacga gattcggcgg gatacaattc tctacattat tcatgaaagg      2100
     ttcccctcaa tgttcagttt tttatcgcag gcttattctt ttccgtctca attatactat      2160
     ggcgacaccc ccatctcctc ccgccgcggg gcccaacaag gggacccgtt aggtcccgcc      2220
     ctttttgcgc tcgtcgttca acccatcatc ctcgccgtcg aaacggagct aaacctgtgg      2280
     tatttggacg atgccactat agcggacacc ccagaaaaag tgttagtcgc gctggacacc      2340
     attatccgca tgggcgagga agttggtctt cgcctgaaca ccgccaagtg tgaagtgggc      2400
     gtgctagggg cggacgaaca ttcccgcctt gaaattttgg agcgttttcg tcgggcagca      2460
     ccgggaatac aggagatttc ccccgaagcc gccgtactcc tgggtgctcc tctcaccgac      2520
     gagtcgatcg aggctgtact gggggcgaag gccgaacaat tagctacact tggggcccga      2580
     cttcttcacc tctcctccca ctccgccttt ttccttcttc gagcttcggt ctctacaccg      2640
     cgtctcattt actttttgcg gtgtgccccc acttggcgga gatttgactc cctcaccctc      2700
     tacgacgcca aacttaagga gtccatggag gggattctca actgtttcct ttccccgcaa      2760
     tcttggcttc agtcctccct tccggtcagt gaaggtggcc tgggggtcag gcgtgctgta      2820
     gacgtggcga ttccgtgttt cctagcgtcc gcctacagcg ccctgcccct cgttgagcgc      2880
     ctacttccgc catacctaca tggcaccgac accgcacagc aggaaggaga agagaggtgg      2940
     aaccccatgg gaccggcgga actccccccg ctcgaagtta ggggtattca ggccgcatgg      3000
     gagaagcctc aacaggaggc cgccatcaag cacctcaaga atagtgcacc tacaccggag      3060
     gataaagccc gactccttgc tatgggacag ccacatgtgg gggcgtggct aaatgtcatc      3120
     ccttcgccac aacttgggac gcttctcccc aacgagacgt tccgagtcgc ttgcgcgctt      3180
     cgccttggat gcgacgtgtg ccactctcat aaatgcccat gtggagcgga ggtcacaaca      3240
     aaaggctatc atggcctaaa gtgtaagagg agcgcgggtc gttattcgcg acacaccgcg      3300
     gcaaatgacg ttatttggag agcgctccga tctgctggag caccagctat caaagagcca      3360
     ccaggttgtt ctcgacaaga cgggaagagg ccggacggcc taacgttagt cccatgggcg      3420
     agagggaggc ccttggtttg ggactttaca tgttcggaca ccttcgcacc atcttacctc      3480
     cctcaaacct gcgttcatcc tggtgcggca gccgaaagag cggaggacgc caagattaag      3540
     aaatatgaat tccttcagga cagattcctc tttgttcctg tagccattga aacgatagga      3600
     gtgtggggca aagagggcct gtcccttatc aaggaaatcg gatcaaggat cacgatcgtt      3660
     acggaggaga agagggcaac atcatttctc ctccagagga tgagtattgc agtgcagcgt      3720
     ggaaatgtgg ctgctatttt gggatctctt ccagccggac gagagttgga tgagattttt      3780
     tacctttagg acaactacaa ttaaaagagt tttttaaata ttcagatagg gacacttatg      3840
     tacggcgctg gtcgtttagc tttttcgaaa tacatatatg taaaatgatt tcatggatat      3900
     gtgcaaaaat gcaataaag                                                   3919
//
ID   CRE-6_FoCa  repbase;    DNA;    INV; 3777 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-6_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3777
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2725-2725 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           330..3599
FT                 /product="CRE-6_FoCa_1p"
FT                 /note="RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MSTPXENADPPSSQPPRDXXTPAPRPRGRPRKSIVGI
FT                 XPSAXGLGGDEPXSSDGATSAXICXADPPSVSDTSLIVPRPCRSSVSPTSP
FT                 GVTKKDTISSAQDWVRNSFVVVDPNNHPPIRLKKADVFARYAVYVAQSGEG
FT                 GVSESTIGKYIKQFFPDTITRRVGARGGLHNCFEGIQWVDAPPPSPQQQQQ
FT                 RYDWGEILARLKTTTPTLRRVPRGARRSVAQCLAKILEQVSESDDEESWGK
FT                 LLLFPYATLPVPQKSDRIKNLTTWVKDHTAGWVGGFSIPRPLPPRPPSKKP
FT                 PLDMTAKKVEAKLADGDIRGAIRLACSDDTIAPSDDETLAALLTKHPAHPQ
FT                 PVDFPPPLEDPVIAPVLDEELLRAISSFPPGSAGGLDGMRPQILKDLLGCS
FT                 QGEGGDQLAEAMRTFLNKVLNGGVPSTFCPLFYGASLTALKKKSGGIRPIA
FT                 VGNTWRRLAAKIIVGRITPQLIKHFSPHQLGVGIKGGAEIGAHAARIFYGH
FT                 DHTSPKAFLKIDFRNAFNEIRRDTLLHAVRDHFPSIFPFVAQCYESPSSLF
FT                 YGTIPIPSLLGCHQGDPLGPALFSLVIHPIVEAMETELNLWYLDDGAIGDS
FT                 PEKALAALATIARMSGEVGLHLNHDKCEVGILGAEREAAIDILLQFQQVAP
FT                 GIQLMSPDSAMLLGAPLTNEALGVVLATKTQQLATFSQRLLDLSAHSAFFL
FT                 LRASISIPRLIYFLRCAPSWRKLDALAHYDATLKDALEGILNCTLSEAAWM
FT                 QSSLPVKEGGLGLRHAVDVAIPCFLASVHSVLPHVERLLPDHLHGTDIAMA
FT                 EGVQRWTDLDLTDLPLETVRGIQSAWERPILDNTLSKLSELAVIPEDTARL
FT                 RSLRDKYAGVWLNALPSPQLGTLLPNETFRVAIALRLGCDICEPHKCPCGA
FT                 QVTSRGYHGLSCRRSKGRWSRHEAANDVIARALRSAEVPCIREPAGCSTTD
FT                 GKRPDGMTLVPWSRGRSLVWDFTCADTFAPSYLPDTVRHQGAAASKAEDRK
FT                 RKRYAFLMDRYIFVPVAMETTGVWGQEGLAFILQVGQRIAAATGQSNAVNF
FT                 LRQRVSLAAQRGNVASILGTLPPGKELEEVYYL"
XX
SQ   Sequence 3777 BP; 741 A; 1222 C; 959 G; 818 T; 37 other;
     gttttagtgg gctmcgttct tcccaacacg kagmaggccc cgcctcscct tagcaacsgt        60
     wgccaagmcc csgttwtctc ccgtttttgg wcctggaagg asctcccacg actcwgwtcg       120
     tgcagggggg gggtccctgc gcccccagaa gcggcacgga gtttgagtgw ccgtcttctg       180
     mtggggctgg cctctctcam gcattttwaa tgccttgttc aggcgagatt tctaaatcct       240
     awttatttta gtggcgggaa actaattatt tttgtttcct tgggtgggac taattggtct       300
     ctcttcgccc tcaaggcccc tcacagasma tgtccacgcc amaagaaaac gccgaccccc       360
     cctcktcgca accsccgcgg gacgwckcca cacctgcacc tcgmccccgc ggmcgaccmc       420
     gcaaatccat cgtmggaatc sccccttccg ccakcggatt aggcggwgat gagccwtsct       480
     cgagtgacgg ggcgacgtca gccmcgattt gcgwcgccga ccccccctct gtttccgaca       540
     cstcactcat tgtcccccga ccttgccgat catccgtttc ccccacgtcc cctggtgtta       600
     ccaaaaaaga caccatttct tccgcccagg actgggttcg aaattctttt gttgttgtcg       660
     accccaacaa tcaccctcca atccgtctga agaaagcaga cgtctttgcc cgctacgctg       720
     tttacgtcgc ccagagcggg gagggcggag tctcggagtc caccattggg aaatacataa       780
     aacagttttt ccccgacacc atcacccgtc gcgttggagc caggggtggc ctccacaact       840
     gttttgaggg tatccagtgg gtggatgcac ctccaccttc acctcaacaa caacaacaac       900
     gctacgattg gggagaaatt ctcgcccgcc tcaagaccac cacgcccact ttgcgaagag       960
     tcccccgcgg tgcaagaagg tctgtggcgc agtgtctcgc caagattttg gagcaagtgt      1020
     ccgagtcgga cgacgaagaa agctggggaa agttgctcct ctttccttat gcaacactcc      1080
     cagtccccca gaagtcggat cgcatcaaga atttgacaac ctgggtcaag gatcataccg      1140
     cggggtgggt gggcggcttc tccatccctc ggcccctccc accacgccca ccctctaaaa      1200
     aacccccact cgacatgacg gcgaaaaagg tggaggccaa gttagccgat ggtgacattc      1260
     ggggagcaat ccgcctcgca tgctcagatg acaccatcgc tccgtccgac gatgagaccc      1320
     tcgccgccct tctcacaaaa catcccgccc acccacaacc agtcgatttt cctccaccac      1380
     ttgaggatcc tgtcattgcc cctgttttag acgaagagtt gcttcgggca atttcctctt      1440
     ttccgccagg gtccgcgggg ggactggacg gaatgaggcc ccagatcttg aaggatctcc      1500
     tggggtgcag tcaaggagaa gggggcgacc aactcgccga agcgatgcgg accttcctca      1560
     acaaggtcct caacggtggt gtcccctcaa ctttttgccc cctcttttac ggagcttccc      1620
     tcactgccct gaagaagaag tcgggcggga ttcgacccat cgctgtgggt aatacgtggc      1680
     ggcgccttgc cgcgaagatc attgtgggaa ggattacccc tcagttaatc aagcattttt      1740
     ccccccacca attgggggtg ggcatcaaag gcggggcgga gattggcgcc cacgcagccc      1800
     gaatttttta cggccacgac cacacctccc caaaagcgtt cctgaaaatc gacttcagga      1860
     acgccttcaa tgaaattcgg cgggacacgc tactccacgc cgtccgcgac cactttccct      1920
     ccatctttcc ttttgtggcg cagtgctacg aaagcccctc gtcgcttttc tacgggacca      1980
     tccccatccc ttccctcctt gggtgccatc agggcgaccc cttaggcccc gccctcttct      2040
     ccctcgtaat ccaccccatc gtcgaagcca tggaaacgga actaaactta tggtacctcg      2100
     acgatggggc cattggggac tctcccgaga aggctttggc ggccctggca accattgcta      2160
     ggatgagtgg tgaggtgggc cttcacctca accacgacaa atgtgaagtc gggattctgg      2220
     gggcggagcg ggaggccgcc atcgacatcc tgctccaatt ccaacaagtt gcccccggga      2280
     ttcagctgat gtcccctgat tctgcgatgc tgctgggcgc ccccttaact aacgaagccc      2340
     tgggggtggt tctggccacg aagacgcagc aattggccac tttctcccaa cgactcctcg      2400
     atctctcggc tcattcggcc tttttcctcc tgagggcgtc catctccatc ccccggctga      2460
     tttactttct ccgctgcgca ccgtcgtgga gaaagttgga cgccctcgcc cactacgacg      2520
     ctactctgaa ggacgccctg gaagggatcc tcaactgcac tctctcggag gctgcttgga      2580
     tgcagtcctc cctacccgtg aaggaaggcg gcctggggct caggcacgct gtggatgtgg      2640
     cgataccgtg ctttttagcg tcggtccaca gcgtcctgcc ccatgtagaa cgtctccttc      2700
     cggaccacct ccatggcacc gacatcgcca tggcagaggg tgtgcagcgg tggaccgacc      2760
     ttgacctcac cgaccttcca ctcgaaaccg tcagagggat tcaatcggcg tgggaacgcc      2820
     ccatactgga caacactttg tccaaactct ccgaattggc agtgatcccg gaggatactg      2880
     cccgtctacg ttccctccgt gacaaatacg ccggggtgtg gctcaacgcc ctcccctctc      2940
     cacaactggg cacccttctc cccaacgaga cctttcgggt cgcaatcgcc ctccgcctag      3000
     gctgcgatat ctgcgagccc cacaagtgcc cgtgcggggc gcaggtcacc tccagaggct      3060
     accacggcct ctcctgccgc cgaagtaagg gtcgttggtc ccgccatgag gccgccaacg      3120
     acgtcatcgc aagagccctc cggtctgccg aagtaccctg catcagggag cccgcggggt      3180
     gctccactac ggacggcaag cgtcccgacg ggatgacact tgtcccttgg tcgcggggga      3240
     ggtcccttgt ctgggacttc acctgcgcgg acacattcgc ccccagctac ctcccagaca      3300
     ccgtgcgcca tcagggcgct gccgccagca aggcagagga ccgcaagagg aagaggtacg      3360
     ctttcctcat ggatcgatac atttttgtcc ccgttgccat ggagaccacg ggagtttggg      3420
     gccaagaggg actggccttc atcctccaag ttggccagag gatcgccgcc gcaactggac      3480
     agtccaacgc cgttaacttt ttacgccagc gggtttcgct cgccgcgcaa cgtgggaacg      3540
     ttgcctcgat tctaggtaca cttcctccag gaaaggaact ggaggaagtg tactatttgt      3600
     agtccgttct ctctctctcc cattcttacg gaccttttct gcgattttct gcgtttcttt      3660
     aagttaggga cctttcttgt gcgactcttg cgtagtcagc tttttgcgat actttgtgat      3720
     tattttcgta ccaactctgc gaacacagct tatactctga tcaataaaaa caaaaaa         3777
//
ID   CRE-7_FoCa  repbase;    DNA;    INV; 3551 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   CRE; Non-LTR Retrotransposon; Transposable Element; CRE-7_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3551
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2726-2726 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..3479
FT                 /product="CRE-7_FoCa_1p"
FT                 /note="PHD finger, RFX DNA-binding domain, reverse
FT                 transcriptase, and restriction-like endonuclease."
FT                 /translation="MSNCSNSNTSKCCEPPKKACPPPAPPPCTNLPATLTF
FT                 ACLAEECKPVPKPPCPEKPKDDCTCVGAASAYEEPKPKNNNSDDQRCPIST
FT                 CPGASNTDDDNWILCDHCQTWYHTACVAVVVIPENEWLCPDCFSSQAISSS
FT                 QNSTTTRKKHTIASTQHWLKLNIMEDPSGQIPKSEVVTRYAHHIETSGEGK
FT                 VHDVTVAKYINQLFPNATLLRPRARGATNAYVGIRWADQPPLQQLPPNQAD
FT                 FLGSSLAKLKGTVPTLRRVPRGARSIVAQSLTKILKEIASGNSEESWRKLL
FT                 FFPYATLPVPQKSDQVKNLTTWVKTRTSEWENNFSIPLPHPPRQFSQRSPQ
FT                 IDSTVKKVEAKLADGDIRGAIRLACSDDTIAPNDDDTLSVLRAKHPVHPEP
FT                 TNYPQPLADDSVIEAVHVPEVAKAVSTFPPGSAGGLDGLRPQILKDLLSCN
FT                 QGETGEHLAQAITDFLNHVIAGKVPAKLCPILYGASLTALRKKTGGIRPIA
FT                 VGNTWRRLAAKVILAKITPQLIDHFSPHQLGVGIKGGAETGAHAARVYYNY
FT                 PHHTPKAFLKIDFRNAFNEVRRDTLLHTVRDNFPSIFPFVSQCYANPSSLF
FT                 FGTTSLPSLLGCHQGDPLGPSLFSLVIHPIIKTLDTELNAWYLDDGTIADT
FT                 PETVLAALEKVSRMGEEVGLYLNHNKCEVGVLGADDDTITQIFQEFQNFAP
FT                 GIQLITRENATLLGSPLTNEAMEAVLAAKTEQLATFSKRLKKISAHSAFFL
FT                 LRASISIPRLIYFLRCSPSWRKREALALYDATLKDALEGILNCSLSEAAWM
FT                 QSSLPVKEGGLGVRHAEDVAIPCFLSSVYSTQPLMEQILPVYLHGSDAAIA
FT                 EGEERWTSLGPTNLPPNTVRGLQTAWERPIIDITVSHLVVAAATSEDTARL
FT                 CALRDKYAGIWLNALPSPQIGTLLSNEAFRIAISLRLGCDVCQPHTCPCGA
FT                 QVSSRGYHGLSCRRSAGRWSRHAAANDVIARALRSADVPCILEPPGCSHQD
FT                 GKHPDGMTLVPWARGRSLVWDFTCADTFAPSYLPETVRHQGAAATKAEDRK
FT                 KKLYAFLLDRFIFMPVAIETTGTWGQEGLSFIKEIGQRIATATGEPRSTTF
FT                 LLQRLGITVQRGNVASILGTLPPGKKFNEVYYI"
XX
SQ   Sequence 3551 BP; 959 A; 1001 C; 770 G; 821 T; 0 other;
     ctgacgtttc ggagagataa tcggataagg caagtcaaga aaccatcacc atcatcatga        60
     gcaactgttc caactctaat acgtccaagt gctgtgagcc ccccaagaag gcgtgtccac       120
     ctccggcccc accaccatgt accaacctcc cagctacctt gaccttcgcc tgtcttgcag       180
     aggagtgcaa accggtcccg aagccaccct gccctgaaaa accgaaggat gactgcacat       240
     gcgttggcgc ggcctcggcc tacgaagaac caaaaccaaa gaacaacaac tcagatgatc       300
     aacgttgccc gatatccaca tgccctggag ctagcaacac agatgatgac aattggatac       360
     tttgcgacca ttgtcagaca tggtaccaca cagcttgtgt tgctgttgtc gtcataccgg       420
     aaaatgagtg gctttgtcca gattgtttct cttcacaagc aatctcatct tcacagaact       480
     caactactac aaggaaaaaa cacaccatcg cgtcaacaca acattggctt aaattaaaca       540
     ttatggagga tccctctggc caaattccaa aatccgaggt cgtcacccgt tacgcccacc       600
     atattgaaac ctctggagaa ggaaaagttc atgatgtcac agttgcaaaa tatatcaatc       660
     agctcttccc aaacgcaacg cttcttcgtc cacgagctcg aggtgctaca aacgcttatg       720
     ttggaattag atgggcagac caaccaccac ttcaacaact tcctccaaac caagctgact       780
     tcttgggttc ctctttagcc aagttgaagg ggaccgtccc aactttgaga agagtcccgc       840
     gtggtgcaag gagtatcgtc gctcaatctc tgaccaaaat tctcaaggaa attgcttctg       900
     ggaatagcga ggaaagttgg agaaagctcc tgttcttccc gtatgctacg cttccagttc       960
     cacaaaaatc ggaccaagta aaaaatctga ccacatgggt gaagacccgc acttctgaat      1020
     gggaaaataa cttctccatc ccgctaccac atccaccacg ccagttctcg caacggagcc      1080
     cccaaattga ttcaactgtc aagaaagtgg aggccaaact cgcagatggc gacattcgag      1140
     gagcaattcg tcttgcctgc tctgatgaca ccatagcccc aaacgacgat gacactctaa      1200
     gcgtcctccg tgcgaagcac ccggtacacc cagagcccac aaactatcca caaccactag      1260
     cggatgactc cgtgattgaa gcagtacacg ttcctgaagt agctaaggcc gtatccactt      1320
     tccccccagg ttcggcagga ggactcgatg gtttgagacc ccaaattcta aaggacctac      1380
     tcagctgcaa tcagggggag acaggagaac acctcgccca agcaatcaca gatttcctca      1440
     accatgtgat tgctggaaaa gtccctgcaa agctgtgccc aatattatac ggagcatctc      1500
     tcacggcgct gaggaagaag actgggggta tcagacccat cgcggtggga aatacgtggc      1560
     gccgactcgc cgccaaggtc atcctcgcta agattacccc ccaacttatc gaccactttt      1620
     cacctcatca gttaggcgtt ggaataaaag gtggcgctga gaccggtgcc catgccgccc      1680
     gtgtatacta caactaccct caccacaccc ccaaagcatt ccttaaaatt gattttagga      1740
     acgcatttaa tgaagtgaga agagacactc tactgcacac tgttcgtgat aattttccat      1800
     caatcttccc gttcgtgtcc caatgctacg ctaacccgtc atcacttttc ttcgggacaa      1860
     catctctccc ttcgcttctg ggttgtcatc agggcgaccc tttgggccct tctctgtttt      1920
     ctttggtcat ccaccccata atcaagactt tggacacaga gctaaacgca tggtatctcg      1980
     acgacgggac tatcgcagac accccggaaa cggtactagc agcccttgag aaagtttcca      2040
     gaatgggtga agaagtgggg ctttatctca accacaacaa gtgtgaggtt ggagtattgg      2100
     gggcggacga cgacaccatc acccagattt ttcaagaatt tcaaaatttt gccccaggaa      2160
     tccaactgat aactagagaa aatgcaacat tattaggttc tcctcttacc aacgaagcca      2220
     tggaggcggt tttggctgcc aaaacggagc aattggcaac tttctccaaa cgtctcaaga      2280
     aaatatctgc ccactcagct ttcttcctcc tccgagcttc tatctccata cctcgtttaa      2340
     tatactttct ccgatgctca ccgtcgtgga gaaaaaggga ggccctcgct ctctatgacg      2400
     ctacactcaa ggacgccctg gaggggatcc ttaactgctc actctcggag gctgcatgga      2460
     tgcagtcctc tctacccgtg aaagaaggtg gccttggggt cagacatgct gaagatgtag      2520
     cgataccgtg ctttctttcg tcagtctaca gcacccaacc cctaatggaa caaattcttc      2580
     cggtttacct acatggttcc gatgccgcca ttgcggaagg agaggaacga tggacttctc      2640
     ttggcccaac taatcttcct cccaacacag tgagaggatt acagacagca tgggagcgcc      2700
     ccatcatcga catcacagtg tcccacttag tcgtcgccgc agccacgtct gaagatacgg      2760
     ctcgcctatg tgctcttcgc gacaaatatg caggaatatg gctcaacgct ctcccatctc      2820
     ctcaaatcgg cacccttctc tcgaacgagg catttcgcat cgcaatttcc ctccgtttag      2880
     gttgcgatgt ttgtcaaccc cacacttgcc cgtgtggagc gcaagtcagt tcacgaggat      2940
     atcatggttt atcctgccga cgaagtgctg gtcggtggtc tcgccacgca gccgctaacg      3000
     acgtaatcgc gagggcgctt cgatcagccg atgttccctg catccttgaa ccacccggat      3060
     gttcacacca agacggaaag catccagacg ggatgactct cgttccgtgg gcaagaggaa      3120
     gatcccttgt gtgggatttt acctgcgctg acaccttcgc acctagttat ctccccgaga      3180
     cagtccgcca ccaaggagca gcagcaacaa aggcagaaga tagaaagaaa aaattgtacg      3240
     cctttctcct ggaccgattc atctttatgc ccgttgcaat tgagacgaca ggtacatggg      3300
     gtcaggaggg gttatccttc attaaagaga ttggacaacg gatcgctacc gcgactggag      3360
     aaccacgctc cacaactttt ctcctccagc gactcggcat tacagttcaa cgtggaaatg      3420
     tagcttcaat cctggggaca cttccaccag gaaaaaagtt taatgaagtt tattatatct      3480
     aaaactacca tgtattttac agacattgtt actctgtaca gaaataagtg tattttatta      3540
     acaaattata a                                                           3551
//
ID   CRMAR       repbase;    DNA;    INV; 1320 BP.
XX
AC   AY034623;
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Ceratitis rosa mariner-type transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; CRMAR.
XX
OS   Ceratitis rosa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Pterandrus.
XX
RN   [1]
RP   1-1320
RA   Gomulski L.M., Torti C., Bonizzoni M., Moralli D., Raimondi E.,
RA   Capy P., Gasperi G. and Malacrida A.R.;
RT   "A new basal subfamily of mariner elements in Ceratitis rosa and
RT   other tephritid flies.";
RL   J Mol Evol 53(6), 597-606 (2001).
XX
DR   EMBL/GenBank/DDBJ; AY034623; Positions       1    1320.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..1196
FT                 /product="CRMAR_1p"
FT                 /translation="MERYTIQQRVKVIQTYYENGRSNQNAYRALRDFFGQF
FT                 DRPNVRTIAKIVEKFEQIGSVEDVRTPVHARTARTAENIAAVRDSVAEEPS
FT                 TSTRRRAQQLHLSRSSMMNIMHKDLHLHAYKVQLAQELKPLDHSKRREWAE
FT                 WFQEMATVDDQFSKKIIFSDEAHLHLSGFVNKQNCRIWANENPRVIVEKPV
FT                 HPQRVTVWCGLWAGGIIGPYFFQNEAGQAVTVNGVRYREMITNFLWPQLED
FT                 MDVDDMWFQQDGATCHTANETMALLRNKFNGRVISRNGDVNWPPRSCDLTP
FT                 LDFFLWGYLKEKVYVDKPATTQELKDEIIRHINGIETPLCLSVIENLDHRM
FT                 EVCRRGRGAHLADILLHT"
XX
SQ   Sequence 1320 BP; 395 A; 268 C; 290 G; 367 T; 0 other;
     aagggtggtt aaattgtaag ggccaatgtt gaatgtgaac cacacctaaa cgccaagttt        60
     ttttccggaa ttaatttgac atttctctat ttcagactta ctcaatttga accatggaga       120
     gatacacaat ccaacaacgt gttaaagtta tccagactta ttatgaaaat gggcgttcaa       180
     atcaaaatgc atatcgtgca cttcgtgatt tttttggtca atttgatcgt ccaaatgtgc       240
     gtacaatcgc aaaaatcgtg gaaaaattcg agcaaatcgg gtctgtagaa gatgtgagaa       300
     caccagtaca tgctcgtaca gctcgtactg cagaaaatat tgctgctgtt cgcgatagtg       360
     tggctgaaga gccgtccacc tcaactcgtc gtcgtgccca acaattgcac ctctcacgct       420
     cgtcgatgat gaacattatg cataaagact tgcatttaca cgcttacaag gtgcaattgg       480
     ctcaagaact aaagcctctt gaccattcca aacgtcgtga atgggcagaa tggttccaag       540
     aaatggcaac agtggatgat caattttcga agaaaatcat cttcagtgat gaggcacatt       600
     tgcacctcag tggattcgtc aataaacaga attgccgcat ttgggcgaat gagaatccaa       660
     gagtgattgt cgaaaaacca gtgcacccac aaagagtgac tgtttggtgc ggcttatggg       720
     ctggcggcat catcgggccg tattttttcc aaaatgaggc cggtcaggca gttactgtga       780
     atggtgttcg ctatcgtgag atgataacga attttttatg gccacaattg gaagatatgg       840
     atgtggacga tatgtggttt cagcaggacg gtgccacttg ccacacagct aacgaaacaa       900
     tggctctttt gcgcaacaaa ttcaatggcc gtgttatctc acgtaatggc gatgtcaatt       960
     ggcccccaag atcatgtgat ttgacaccgt tggacttttt tctctggggt tatttgaaag      1020
     aaaaggtgta cgtcgataag ccagcaacaa ctcaagagct aaaggatgag ataattcggc      1080
     acattaacgg catagaaact ccattatgcc tcagcgtcat cgaaaatttg gaccatcgta      1140
     tggaggtgtg ccgccgaggt cgcggcgctc atttggcaga tattttgtta catacataat      1200
     tgagtaatac caatatatca taataaaata aaatttcaat aatttcctaa atagtttgtg      1260
     ttttattcaa aatcaacatc ggcccttgaa atttcggccc ttgaaaattt aaccaccctt      1320
//
ID   Crypton-1_NVi repbase;    DNA;    INV; 1955 BP.
XX
AC   .
XX
DT   17-FEB-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Putative Crypton-type transposon.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; Crypton-1_NVi.
XX
NM   Crypton-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1955
RA   Jurka J.;
RT   "First Cryptons from insects.";
RL   Repbase Reports 9(2), 480-480 (2009).
XX
RN   [2]
RP   1-1955
RA   Bao W. and Jurka J.;
RT   "Crypton in Nasonia vitripennis.";
RL   Direct Submission to Repbase Update (26-MAY-2009)The full length
RL   of this element..
XX
DR   [1] (Consensus)
XX
CC   The 3'-end is ~120 bp palindrome structure.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(156..656,637..789,740..1492)
FT                 /product="Crypton-1_NVi_1p"
FT                 /translation="MIAKLCIISARRLVYNLLVPNRKVNMSDNSSCDTDDI
FT                 SDYGNEIPPEIAAAAKEVTLDLLPDKSKRLYVTTTLSLGVQQKKTTMFVEE
FT                 IFLAYFKELAMTLSPPTLWNRYSMLKTTVKTFDHIDISQYHQLLAYIKKKM
FT                 LNIRKKNPRLSLRKTLVDFVMMLRTKHICSGRSIFSEKSNLFIKNLKLYFI
FT                 FQQFTRIDFVVGCSYFWNSRCVEKRRINVVLIFGILGALRRGELTNITTDD
FT                 IEDDSTRLLIKIPVTKNNVPRSFAVRGEFYQICKNYMNLRPTEIDKHKRFF
FT                 IHYIDGKCTRQPIGLNTIGQMPKQIADWLKLPNPHLYTGHSFRRTSATLLV
FT                 DGGGNLTDLKRHGGWKSSTVAEGYINESMNHKEQIHKKITKSIVLKPTEVV
FT                 VADNHIPQCDNQVASTSGAEITVDQPKKSVTVSLKRTRFDSEGRDDDEPHA
FT                 EDEFYRLTETQQATCGSPLKKRR*"
XX
SQ   Sequence 1955 BP; 676 A; 335 C; 348 G; 596 T; 0 other;
     tttttcataa cagcgtgcgc ggagctcgac tttagagtca tttgttttgg cgctaaagtc        60
     atcgacttag gcacgctctc tcacagcgtg cgcgggaaca tttgaagcgt gcgtggggaa       120
     acctatcctg tcgctgtcat ttgttttaca tatgtatgat tgcgaaattg tgtatcatta       180
     gtgcaagacg tcttgtttat aacctattgg tacctaaccg aaaagtaaac atgagtgata       240
     acagttcttg tgatacagac gatatatccg attatggaaa tgaaattcca cccgaaatcg       300
     ctgcagcagc taaagaagta actttagatt tattgccgga caaatcaaaa cgtctatatg       360
     ttacaacaac tttaagtctt ggcgttcaac aaaaaaaaac cacaatgttc gttgaagaaa       420
     tatttttagc ttatttcaaa gaattggcaa tgacactttc tcctccgaca ctatggaacc       480
     gttattcaat gttgaagact accgtaaaaa cttttgatca tattgatata agccaatatc       540
     atcaactttt agcttacatc aagaaaaaaa tgctaaatat tcgaaaaaaa aatccaagac       600
     tttcactgcg gaaaacgtta gtagattttg taatgatgct ccggacgaag catatttagt       660
     gaaaaaagta atttatttat aaaaaattta aaattgtatt tcatttttca acaatttacg       720
     agaattgatt tcgttgtagg ttgttcttat ttttggaatt ctcggtgcgt tgagaagagg       780
     agaattaact aatataacaa ccgatgacat tgaagatgat tcgacgagat tattaataaa       840
     aattccagta acgaagaata atgtccctcg ttcttttgca gttcgtggag aattctatca       900
     aatatgtaaa aattacatga atcttagacc aactgaaatc gataaacaca aaagattctt       960
     catacattat atagacggaa aatgcacacg acagccgatt ggtctcaata caataggtca      1020
     aatgccaaag caaatagctg attggttaaa attaccaaat cctcacttat acactggtca      1080
     tagtttccga agaacttcag caactttgct agtcgatgga ggaggtaatc ttactgactt      1140
     aaaaagacat ggcggttgga aatcgtctac agtagctgag ggctacatta atgaatctat      1200
     gaatcataag gaacaaattc ataaaaaaat aactaaatcg atcgtcctaa aacctactga      1260
     agttgtagtg gcagataacc atataccgca gtgtgacaat caagtagcat ctacttctgg      1320
     agcagaaatt acagttgatc aacccaaaaa atctgtaaca gtttcgttaa aaagaaccag      1380
     atttgattca gaaggtcgag atgatgatga accacacgct gaggatgaat tttatcgatt      1440
     aaccgaaaca cagcaagcta catgtggttc accgttgaaa aaacgtagat aaaactaata      1500
     attgtaatgt tacaattaat gtacataatc atcataatta actacaatgt acgatacact      1560
     atatttgtgt tttagtttaa tattttttga taaaagatgt aataattttc tattaaaaat      1620
     aattcatttt taaatttgca aaaatatttt agtttagtat aattacactc gtatatagcg      1680
     acaatgtgtg atttaacgaa ctttttgtat gaataagctt tcacaggagc gtggcctatt      1740
     tcgcattatg aaataaattt aatttgtata atatactaat ttagtataat gtcgagctcc      1800
     gcgacacttg ttatgaaaaa tagtatacgc aactcgtgcg agggaaacac gacttacgca      1860
     ctcgtggtag ttcagcgccc tcgcttcgct cgggcgcgaa ctaccgcgcg tgcgtaaatc      1920
     gtgttcccct cgcactagtt gcgtaatgta ctatt                                 1955
//
ID   Crypton-1_TC repbase;    DNA;    INV; 1729 BP.
XX
AC   .
XX
DT   17-FEB-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative Crypton-type transposon.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; Crypton-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1729
RA   Jurka J.;
RT   "First Cryptons from insects.";
RL   Repbase Reports 9(2), 468-468 (2009).
XX
DR   [1] (Consensus)
XX
CC   This element may represent a Crypton-like DNA transposon, first
CC   to date identified in insects.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(325..525,626..1450)
FT                 /product="Crypton-1_TC_1p"
FT                 /translation="MSHVPEAIRNEARSVVSGLLPKKSSARYEHQYLDFKN
FT                 WQKKQNRRECKQDEECVIFIGILKSTVDEILKEITVVLFRFYKVIAFLKRK
FT                 NERYTPKKAKILTKEQVETFLLEAPDDQWLLFKVVTIFGIFGACRCDELLS
FT                 LTPNDVEDTGKYIIVTLRNTKNFTTRRFTITDEECRFQPCVLYRKYASLRP
FT                 TQAESLRLFLTYRGGKCISLNAGQHTIGGIPKKIASYLKLSEPELYTGHSF
FT                 RRSAATMVVDSGGDILALKRAGGWKSSAVAEGYVEDSIKQKLERAKKLFLV
FT                 PEPTSASSSSKHASTVSEETSEKFNVSGNQNCNITINVYSREINPVNNE*"
XX
SQ   Sequence 1729 BP; 589 A; 272 C; 347 G; 520 T; 1 other;
     gtaatagtat tttacagtat tagcaaggta aaacggtttt tactggcgaa aggagggaat        60
     gactggcgag ccgaaggcga gcctgtcacc tcctggagcc agtaaaaacg gttaccttgc       120
     gtatactgta caatacttta tttgtttctc acttgtaaac aaaacgaaag ttattaataa       180
     aatttgaata aaaaatgtgg ctattttcga aaatttatca aaatgctgta gaaaattact       240
     gtggaaacga catgacaaca acgttattta ttaaacaatt tctttgcaat tttgcaatta       300
     ttacaccttt aacagattaa taaaatgtct cacgtaccag aagcaattag aaacgaagcg       360
     agaagtgtag tttcgggttt attacccaaa aaatcttcag caaggtacga gcatcagtat       420
     ttagatttta aaaattggca raagaagcag aatcgtaggg agtgtaaaca agacgaggaa       480
     tgtgtgattt ttattggcat acttaaatca actgtcgatg aaatatagcc ccaattcttt       540
     atggtccaag tggtcaatgt taaaaagctg cttagaaatt aaagaaaata ttggaactga       600
     caggtttgct gtttactgta aataactgaa agaaataact gttgttttat ttagatttta       660
     taaagtaatt gcttttttaa aaagaaaaaa tgagcgttac acgccaaaaa aagccaagat       720
     cctaactaaa gagcaagtcg agacttttct gctggaagct cctgacgacc agtggttact       780
     ctttaaagtt gtgacaattt ttggaatttt cggagcttgt cggtgtgatg agcttttgtc       840
     tctcacacca aacgatgtag aagacacagg gaaatacata attgtcactt tgcgaaatac       900
     aaaaaatttt acaacaagga ggtttacaat aacggatgag gagtgcagat ttcaaccttg       960
     cgttttgtac agaaaatatg cgtctcttcg accaactcag gccgaaagtc tacgcctttt      1020
     cttaacttat cgtggcggta aatgcatctc cctgaatgct ggtcaacaca ctattggtgg      1080
     cataccgaag aaaattgcgt cgtacttgaa attaagtgaa ccggaattgt ataccggtca      1140
     ttcttttcgc cgctcagcgg caactatggt tgtggattct gggggagaca ttttggcact      1200
     gaaacgtgca ggaggctgga aatctagtgc tgttgcagaa ggatatgtgg aagattcaat      1260
     taagcagaag ctagaacgag caaaaaaatt gtttctagtt ccagagccga caagtgcttc      1320
     ctccagttcc aaacacgcct ccacagtttc agaagaaaca agtgaaaaat ttaatgttag      1380
     tgggaatcaa aattgcaata tcactattaa tgtgtatagc cgagaaatta atcctgtcaa      1440
     taatgaataa gttgttcttg tattttaata atttgtagtt taattcagta attcagtttc      1500
     tgtttgcaat aaaagcttga gaattaagag taattttgcc tcaaattttg ctaaatattg      1560
     atggttgtaa agaaaacaat ttctaatcaa tataaatcaa cgttgcgaac gtgttaattt      1620
     tataactggc gctcctgtca gttttactag tagctaactt gtaaaagtga agtttcgaag      1680
     tgattagaca gatcggataa ttgacgttta caagtgagga acaaataaa                  1729
//
ID   Crypton-2_TCa repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   17-FEB-2009 (Rel. 14.03, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative Crypton-type transposon.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; Crypton-2_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1648
RA   Jurka J.;
RT   "First Cryptons from insects.";
RL   Repbase Reports 9(3), 673-673 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           594..1457
FT                 /product="Crypton-2_TCa_1p"
FT                 /translation="DIGPKSLKHSSEKTFTNFXCKLRTIIILCKRLLLILF
FT                 LKKINRLLIQVALIFGIAGALRREELYKMKCEDVNDTGNVLIITVPDTKTH
FT                 IERRFTVIGETPKHNLNLIDIYKKYKNQRPTNVKTDHFFLQYRQGKCKTQV
FT                 VGINTFSKIPSQIATYLNLPDPSSYTGHAFRRSSASLLVDSGGDLMQLKKH
FT                 GGWKSSTVAEGYVDESMQTKMDSATKILAGTSSTPTASDLSTSVYNPTVNS
FT                 TTQKQVGNKTTNVDEVNSLSKSIVCSSLQINNAQSCTFHISINKDI*"
XX
SQ   Sequence 1648 BP; 564 A; 288 C; 294 G; 499 T; 3 other;
     ttttttctac gtccgttata aaacttagaa tttttttatt catatctgtt cataaagtat        60
     atcattcttg aatgaatcaa aagcgtgaaa aaaagtgccg taacgtgtca ttttttaacg       120
     cgtaaatatt aatatagtag ggtgctttgg acgcggcgct gtcagtagac gctgtcttag       180
     agctgtcaca tagaaaacat tttcaaagtt atttgcttgg tttttgtaag aattgtgttg       240
     ttgaacaaaa aaaaaggtgt tgctagttgt gatggagtgt gaaagcgaag aaagcttcag       300
     ttgcaccccg aggacgtcat tgattcggca aatgccgcta caatgaatat tcttccggaa       360
     aaataaaaaa atcaatattt gaaagaatat aawgatttta tggagtggcg caggaatcca       420
     aagtttcaca gagagagttt tgctcgctta ttttgattca aaatcaaaaa cgtggaragc       480
     ttcaactttg tggtctgcct attccaaatt gaaggccact ttgattataa atcatgacgt       540
     tgacatcagc aaatacccaa aacttattgg gtatttaaaa aataagtcaa taggatatcg       600
     gcccaaaaag tctaaaacat tcctccgaga agacatttac aaatttttka tgcaagctcc       660
     ggaccataat tatcttatgc aaaaggttat tattaatatt atttttaaag aaaattaatc       720
     gcttactcat tcaggttgct ttaatatttg gaattgccgg cgctctgcgg agggaagaat       780
     tatataaaat gaagtgtgaa gatgtgaacg acactggtaa cgttctaatt atcacggtac       840
     ccgacactaa aacacatatt gaacgaagat tcacagttat tggagaaaca cccaaacata       900
     atttaaactt gatagacatt tataaaaaat acaaaaatca acgaccgacg aatgtcaaaa       960
     ccgatcattt ctttttgcaa tatagacagg gaaagtgcaa aacacaagtc gtaggaataa      1020
     acaccttttc aaaaattcct tcacaaatcg caacttattt aaatttaccg gatccatcaa      1080
     gctacactgg acatgcattt cgtcgctctt cggcgtctct tttggtagat tctggtggcg      1140
     atttaatgca gttgaagaaa cacggtggat ggaaatccag cacagttgcc gaaggttacg      1200
     tggacgaatc aatgcaaact aaaatggatt cggcaacaaa aattttggca ggaactagtt      1260
     ccacaccgac tgcaagcgac ttgtccacaa gtgtctacaa tcctacagtt aattctacta      1320
     cgcaaaaaca agtaggaaat aagactacaa atgtagacga agtaaattct ttgagcaaat      1380
     caatcgtttg ctcttctcta caaatcaata acgctcaaag ttgcactttc catatttcaa      1440
     ttaataaaga catttgaatt aatactatta cttttttata ttttcatatt atgacggacg      1500
     tagaaaaaat gttgtatgca attcgtgagt aaagtatctt tttttaactc gtaggaattg      1560
     ccgcactcgc ctacggctcg tgcggtcaac tgttcctact cgttaaaaaa agtgttactt      1620
     tactcacttg ttgcataaat aactatta                                         1648
//
ID   CryptonI-1N1_RPro repbase;    DNA;    INV; 709 BP.
XX
AC   .
XX
DT   29-FEB-2012 (Rel. 17.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Crypton DNA transposon from Triatomid bug.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; CryptonI-1N1_RPro.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-709
RA   Kojima K.K. and Jurka J.;
RT   "Crypton transposons: identification of new diverse families and
RT   ancient domestication events.";
RL   Mob DNA 2(1), 12-12 (2011).
XX
DR   [1] (Consensus)
XX
CC   This is non-autonomous derivative of CryptonI-1_RPro.
XX
SQ   Sequence 709 BP; 275 A; 97 C; 95 G; 242 T; 0 other;
     ttttttctgc aaccatgtag ggaagttctc attactcaat taaaatcagc tgtgtaatgc        60
     ccaacttccc acactagtgg ggggaaattc ccattagtgt cactttccgc acaagtgagt       120
     ggaaaaactt tattgtgctt ccttgatata agaagttttg ttattaacat aaatattttc       180
     tgtaaaactc taataagctt atttaaattt attttattta aataattaaa aaacgaatat       240
     taaaaaataa aataaaaatt gaaaggaata tagaaataaa aataatactt taataaataa       300
     ttagatattt ttaattataa cagttaaaaa ggttatagtg ttaccttata gaaatttaaa       360
     atggattcta gtgatgcctg tttagaaaac actcctccat caataaaaga aacagcagaa       420
     aatgtaataa gtaatgtaaa tacgtaagta atgtaaataa ttgtaatata acaataaatg       480
     tttataataa ataaattact ttttgtagac tgtaaaaatg aaatttttaa ttttattagt       540
     taataaatgg ttgcagaaaa aatataatat ttaactctag tgtaaagtat tttcctcaca       600
     ctcggcaatt tgcacttgca ctcgcatcgc ttcgctcgct cgtgcgtgca aaccctgcct       660
     cgcgtgagga aaagtactac tttccacact tgttaaataa ataactatt                   709
//
ID   CryptonI-1N2_RPro repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Crypton DNA transposon from Triatomid bug.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; CryptonI-1N2_RPro.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3212-3212 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~78% identical to the consenus.
XX
SQ   Sequence 277 BP; 94 A; 55 C; 39 G; 89 T; 0 other;
     acaaaattaa aatattatta attttaacaa tttgtaaact aaagttaatc caatattcta        60
     aattcaataa cctacctaac cttcagcggg tagctttacg tttgtagagt ttatcttcta       120
     aattattgaa acgattgcag aaaaaattta atattgcaca cttagggaag tgttttcact       180
     tcctcgtcca gttgcccact cgctacgctc gtgtgggcaa aacctggact cggtgagtga       240
     aaactcaact tcccacactt gtacaataaa taactat                                277
//
ID   CryptonI-1N3_RPro repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Crypton DNA transposon from Triatomid bug.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; CryptonI-1N3_RPro.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-626
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3213-3213 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~77% identical to the consenus.
XX
SQ   Sequence 626 BP; 231 A; 95 C; 72 G; 228 T; 0 other;
     tttttctgca atcgcttaaa taatgggccc attattgtac taaatttagt gaaggaagtt        60
     caaatttcaa tcactgtttt gtgcactatt gctattgtgc ttaattagta agttttcatt       120
     tttacattaa tcatacaaac aaaataatgt aatataaatt taatagattg ttaaattcag       180
     tattaataaa tacaatttaa aattataagt tagcaatacc ttttaaatat tatatgaaat       240
     tttagacacc cctgttctgt aacctaagag aaacctttac atactggtct aacatcacga       300
     tgctgtgact aatttcacgc gatagtgatg aatatttttg aaaatactcc tcctaaaatt       360
     aaatcaattg cagaaaacta atagataact tacttagctc ttccaagatt acctaccact       420
     gccagttatg gaaacaattg tagtaagtca attaaaaaaa taatttaaaa tgaattaaaa       480
     tatattaatt tttatcttaa tttttacact tctaaagctc aagttaatcc aatattctaa       540
     attcaataat ctacctaacc ttcagcgggt agccttttcc taagtttaga gtttgtcttc       600
     tgaattattg aaacgattgc agaaaa                                            626
//
ID   CryptonI-1_AA repbase;    DNA;    INV; 1980 BP.
XX
AC   .
XX
DT   29-FEB-2012 (Rel. 17.03, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Crypton DNA transposon from yellow fever mosquito.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   CryptonI-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1980
RA   Kojima K.K. and Jurka J.;
RT   "Crypton transposons: identification of new diverse families and
RT   ancient domestication events.";
RL   Mob DNA 2(1), 12-12 (2011).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 2 sequences with >98%
CC   identity.
XX
SQ   Sequence 1980 BP; 637 A; 402 C; 403 G; 538 T; 0 other;
     aatagtagtt tacgcaacaa ggtgcagaat gaagattttt acagcacgag tcgtacgttt        60
     atccaacgag gcttgccgag ttggataatt acgacgagtg ctgtaaaaat cgagttctgc       120
     accgagttgc gtacaacatt ttttgcaatt tcatgaaagg ttacttgagg agtaatttta       180
     aaactatttt tcatcaattt gcgcacggtc gtccgtagcc atgttcgaaa aattctgatc       240
     atagcaggct gtactgagca actgtcacaa tttttcaaac cattgtccgg atagcatcat       300
     tatttgcaac aatgagcgat tccgattctg atgttccgat tgacattgaa tcggcagcgg       360
     aagtggccct ggctggtctc ctaccggaga aatccaagac aagatacgaa gaagcttaca       420
     agcatttcaa cgagtggtgt atcaaaaaca agattggtaa ggttgacgaa aagtgcatgc       480
     tagcatactt ctcgcatgaa atgaagcacc agaagccatc aacgaaatgg acgcgatttt       540
     caatgcttaa aagtacaata cgtctaaata tcggcgttga tattggtgaa tacaaaaatt       600
     tgattgcttt cttgaagcgg aaggcagatg gataccgtcc aaaaaaatca aaaatcttca       660
     ccaaaaaaga catttttgat tttttgaaga acgccagtga tgatatttat ttagctgtga       720
     aggtaaatgt aatttaatca aaaccaaaga actttattta aacctaattt tttttaaagg       780
     tcgcgatggt tgttggagtg tgcggagcat gcagacgaga agaaataacc aagttaacgc       840
     tgaacgacat tgaagatatg ggagacagtg tgaaaatcac tattcccaat actaaaacca       900
     agatcctccg acagttcgtc atcacggcag gtaatgcacc tggcgtcgat atgttgaagc       960
     tgttccgttc ttacagacaa ctgcgtccgg ctgatacaaa ccacttgcgt ttttttgtgt      1020
     gctatcgatc tggaaagtgc actaaacagc ccatcgggat caacacgata gctaaaatgc      1080
     caaaaataat cgccgaattt ctgaagctac cgtcaccagc agattacaca ggacactgct      1140
     ttcgtcgatc gtccgcgtct ctactggcag attctggggt agatatttct gttctcaaga      1200
     ggcatggagg atggaaatct tcaactgttg ctgaaggata cgtcgaaaat tccttgcaac      1260
     aaaaaaagat gatagctgaa aaaattatgg gagttccaga tgaaaatacc acaacagaaa      1320
     gcgttcttcc atccacatcg acagttccgc actacagttt tgctgttcca acatttgcgc      1380
     ccagtacctc ggctacaaga tcgtctgctc cgagtccagt gcaaataacg gcggcagaag      1440
     tcatggaatt tccagctgat gattccagcg ccacagtagg agcggaaaat attccttttt      1500
     cggcaacggc agctacccac agtttcgaag ttccaacatt tgcgcccact acctcgaatg      1560
     ttccaaaccc agttcaaatt aataatttga ctaactgtgt tattaatttt taccaaaata      1620
     aataggtagt aaataggtta tcaataaaat atactcattt gaactgatca cagaaatgat      1680
     ttgttaattt attaaaagaa gaactgatta tcgaactctc ttgatctctc catttcattt      1740
     aacaacaaaa caatatagac ctctccgtgt ctccaacact gcaatcacat gtgctttatt      1800
     acgttactga aaagcgttgc gtaatgaacc attacgcaac tgaaatgcgt tgcgtaatga      1860
     gtcattaccg cacgcttttc agttaggtaa tgaactcata cgacaatgcg ggaaagtagg      1920
     ccgtttcatg acagattagc gtgaggaaaa acggcctatt acgatgagaa attgcaaaaa      1980
//
ID   CryptonI-1_CQ repbase;    DNA;    INV; 1528 BP.
XX
AC   .
XX
DT   29-FEB-2012 (Rel. 17.03, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Crypton DNA transposon from southern house mosquito.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   CryptonI-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-1528
RA   Kojima K.K. and Jurka J.;
RT   "Crypton transposons: identification of new diverse families and
RT   ancient domestication events.";
RL   Mob DNA 2(1), 12-12 (2011).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 2 sequences with >97%
CC   identity.
XX
SQ   Sequence 1528 BP; 450 A; 332 C; 339 G; 407 T; 0 other;
     agtagtttat gcaataaggt gcaaaaagaa gattttttca gcacgagtcg tacatttatc        60
     caacgaggct ctgccgagtt ggataaatac gacgagtgct gaaaaaatcg agttttgcac       120
     cgagttccat acaacgtttt ttgcaaatcc gaaaaataaa cgtttgaaga gtttttcaaa       180
     gaggaataaa ggaatgtgtt ggcgtccaag agtatggcca tcttattttt tccgactcag       240
     tagcctattc aattctaaaa tagtttgttc tgtcatagtt tttctaacca ccttcaagtg       300
     aagaccattt tatttttccc gaaatctgaa gagatgagcg agtccgaaac ggattctgac       360
     tgtccgatgg acattgaggc ggcggccgaa gcagctataa atggccttct tcccgagaaa       420
     tcgaaggcgc tgtatgaagc agcctacaaa aaatttcaag cttggcaggc caagaatcgg       480
     gttcaagcca cggacgaaaa gtgcttgctg gcctattttt ctcaagagct gaaggacaag       540
     agcccgccga cgaagtggag cctatactcc atgttgagaa ctatgatcaa cgtgaaaata       600
     ggcattgaca tttccggttt catgaacttg aaatcgttcc tgaaacggaa gtcggatggt       660
     tatcgcccga aaaagtcaaa aatcctcact aaggaacaaa ttttcaagtt cttgaaggaa       720
     gccgaagact ccgttcattt ggctacaaag gtaaatttaa tgaaagtaaa aacaaaaaca       780
     aatgggttaa cttagtgttt tttgaattca caggttgcgc tcatcattgg agtgtacggt       840
     gcttgtcggc gggaagaaat catgaaactc tctctggacg atattgaaga cctgaaggac       900
     agcatcaaga tcaccatccc taacacaaag acgaaaatta tgcggcaatt catcgttacg       960
     aaaggtgaag cccctggtgt ggacatgttg aaactcttcc ggttgtatgc tgaaaaacgt      1020
     cctgccggta caggtcactc cagatttttt gtttcgtacc gctttggaaa gtgtacaaaa      1080
     caggccatgg ggatcaacac tattgcaaaa ctgccgagaa tcatcgccga gcacctgaag      1140
     cttccgtcac cggagctgta cactggacac tgtttccggc ggtcttctgc ctcactgctg      1200
     gccgattcag gagtcgatat ttccgttctg aagagacacg gtggttggaa gtcatcgtca      1260
     gtcgctgaag gttatgttga aaattctttg caacaaaaga aatcgattgc caccaagatt      1320
     cttggcgaag ctgccgaagt ttctgaaccc tcagaagtgc atatcgcgac atccagcaag      1380
     aatgtaccag agcgtcaagc agaatcaatt acggttaatt ctacactctc tgatacgcct      1440
     tctaccatca gctttcccat gccttcttcg tcttccgccc acaatccagt tcagttcaat      1500
     aatgtgacga actgcactat tttttttt                                         1528
//
ID   CryptonI-1_RPro repbase;    DNA;    INV; 1657 BP.
XX
AC   .
XX
DT   29-FEB-2012 (Rel. 17.03, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Crypton DNA transposon from Triatomid bug.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   CryptonI-1_RPro.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1657
RA   Kojima K.K. and Jurka J.;
RT   "Crypton transposons: identification of new diverse families and
RT   ancient domestication events.";
RL   Mob DNA 2(1), 12-12 (2011).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1434
FT                 /product="CryptonI-1_RPro_1p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MDSGDSCLENTPPSIKEKAENVISNLLPKKSKDRYTS
FT                 CYNNFKKWCADKKVKNTSENILIAYFDEISSTLNSSTLWSVYSMLKTTLNI
FT                 NDNLDISQYKKLKTYIKRKSEYYIPKKSEIFTREEINKFLHDAPNDMFLMM
FT                 KVVFVIGISGACRSCELVQLELSQIKFLEDFITINIPNTKNNVQRTFFISN
FT                 EVGLYNFKQIFQQYINLRPKHTKHPRLLVGYNHGKCNIQPVGINTISKIPS
FT                 RIAKYLKKDNFQRYTGHAFRRTSASLLANEGGDLIQVKKHGGWKSSTVAEG
FT                 YIERSMAAKQNTAQLILQGQPHFSTNQSLPSTSTSSNSNLTLNKSSNQPFI
FT                 TNANNCNITINIYNK"
XX
SQ   Sequence 1657 BP; 651 A; 266 C; 220 G; 520 T; 0 other;
     ttttttctgc aaccatgtag ggaagttctc attactcaat taaaatcagc tgtgtaatgc        60
     ccaacttccc acactagtgg ggggaaattc ccattagtgt cactttccgc acaagtgagt       120
     ggaaaaactt tattgtgctt ccttgatata agaagttttg ttattaacat aaatattttc       180
     tgtaaaactt taataagctt atttaaattt atcttatcta aataattaaa aaacgaatat       240
     taaaaaataa aataaaaatt gaaaggaata tagaaataaa aataatactt taataaataa       300
     ttagatattt ttaattataa cagttaaaaa ggttatagtg ttaccttata gaaatttaaa       360
     atggattctg gtgattcctg tttagaaaac actcctccat caataaaaga aaaagcagaa       420
     aatgtaataa gtaatttatt accaaaaaaa tcgaaagatc gttatacaag ttgttacaat       480
     aattttaaga aatggtgcgc tgacaaaaaa gttaaaaaca catcagaaaa tatacttata       540
     gcttactttg atgaaatttc atcaacattg aattcatcta cattgtggtc tgtatattcc       600
     atgttaaaaa ctaccttaaa cattaatgat aatttagaca taagtcaata taaaaagctt       660
     aaaacttata ttaaaagaaa atctgaatat tacataccaa aaaaatcaga aatatttact       720
     agagaagaaa ttaacaaatt cttacatgat gcaccaaatg acatgttttt aatgatgaaa       780
     gtagtttttg ttattggaat atctggggct tgtaggagtt gtgagctagt acaattagaa       840
     ctcagtcaaa ttaaattttt agaagacttt ataacaataa atattcctaa cacaaaaaat       900
     aacgtacaac gtaccttttt tatttcaaat gaagtaggtc tctataattt taaacagatc       960
     tttcaacaat atattaacct cagacccaag cacactaaac atcctcggct acttgttggg      1020
     tacaaccatg gtaaatgtaa tatacagcca gtaggtataa ataccatttc taaaattcca      1080
     tcaagaatag caaaatattt aaaaaaagac aattttcaaa gatacactgg acatgctttc      1140
     cgtcgaactt cagcatcact gttagccaac gaaggaggcg acttgataca agttaaaaaa      1200
     catggaggtt ggaaaagttc aacagtagca gaaggttata tagaaagatc catggccgcc      1260
     aaacagaaca ctgcacagct gattctacaa gggcaacccc acttctcaac taatcagtca      1320
     ctccctagta cttccaccag ttcaaattca aatcttacat taaataagtc ttcaaaccaa      1380
     ccttttatta ctaatgccaa taattgtaat ataacaataa atatttataa taaataaatt      1440
     actttttgta gactgtaaaa atgaaatttt taattttttt agttaataaa tctaatggtt      1500
     gcagaaaaaa tataatattt aactctagtg taaagtattt tcctcacact cggcaatttg      1560
     cacttgcact cgcatcgctt cgctcgctcg tgcgtgcaaa ccctgcctcg cgtgaggaaa      1620
     agtactactt tccacacttg ttaaataaat aactatt                               1657
//
ID   CryptonI-N1_CQ repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   16-MAR-2021 (Rel. 26.03, Last updated, Version 3)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   CryptonI; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; Repetitive element; REP-3_CQ; CryptonI-N1_CQ.
XX
NM   REP-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-431
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 606-606 (2011).
XX
RN   [3]
RP   1-431
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (16-MAR-2021).
XX
DR   [3] (Consensus)
XX
CC   [3] Consensus update, and renamed from REP-3_CQ. ~99.5% identical
CC   to consensus.
XX
SQ   Sequence 431 BP; 137 A; 78 C; 64 G; 152 T; 0 other;
     tttttgcaat tccgtcgtga aactacttac ttttcctgtc attcttgaac gacgaaatag        60
     cctacttttc tgtaccaaaa ataacagaat cgaatagcaa cacttttcaa aataaatgct       120
     gaaaagttct acttttcagc actgaaatgg gtgctgaaaa gttgaacttt tcagcacttg       180
     tttcgaaaag taacactttt caacattttt ttgatttaaa cgatttattg acaaaataca       240
     tgaaaatttg acttaaaatt tcactcaatg ggtgtttttc ggaattgcaa aaaatgttgt       300
     atggaactcg ttgcaaaact tgattttttc agcactcttc gtatttatcc aactcggtga       360
     acctcgttgg ataaatgtac gactcgtgct gaaaaaatcc tctttttgca acttgttgca       420
     taaactacta t                                                            431
//
ID   CryptonV-10_CFl repbase;    DNA;    INV; 1842 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-10_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1842
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 799-799 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01012429     265 2106.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1215,1196..1840)
FT                 /product="CryptonV-10_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers."
FT                 /translation="FNFNFTKELENDIGKEATDMISNTINDLTDYGPNDSD
FT                 SSDGTETAEINNNSASTSNSNTTFYKSSKNNTIIDTSSDISLKLNVQGFSA
FT                 CDDAYLYVEKSQGPKGQGKTNFCFFCNKMQTKIARHLENVHKDEEEVKKFR
FT                 FLPKGNVERKKLIDSLRRKGNFLYNVDPQFNTGNLITCRRPQKKLKRDATD
FT                 FAPCIKCKGFFAKNSLRHHYKICNQNKKQEEQTVKSTLTLARKIVGRIHKD
FT                 ACQQLREYVLPIMREDNIVRLIRYDSVIIKYANKMCKKYSLQHQHDMIRAH
FT                 LRLLGRFLIALKEINPEITDFASLYNPKFYDSAIRAVNIVAGLNETTYIYR
FT                 TPTVASTLGICIKKIGQILESEYIKEHDKVKKEYVHDFLSLLEEDYGCTVN
FT                 KVVLGRWLYCKEDGCTVNKVVLESRIAKKRNEKVILPLKTDIAKLNQYITN
FT                 LREKSYKILQHKFTYKAWLTLAKTTLIYIQIFNRRRAGETERLLISDLKKS
FT                 EKIDESDEQYRKLHPEDKETAAKYRRVIIRGKLTRFVPLLLDFEMRKSLKV
FT                 ILKFRKNAGVSSKNPYVFGIPGYHNKRHKYLRACMLLRQFVHECDAKRAKT
FT                 LRGTILRKHIATTCASLDLPEN"
XX
SQ   Sequence 1842 BP; 734 A; 251 C; 303 G; 554 T; 0 other;
     tttaatttta attttacaaa agagttggaa aatgacatcg gaaaagaagc tactgatatg        60
     ataagtaata cgataaatga tttgacagat tatggaccaa atgatagcga tagttcagat       120
     ggtacagaaa ctgcagaaat taataataat tcagcatcaa cttcaaatag taatactact       180
     ttttataaat cttccaagaa taacacaata atagacactt cttctgatat atctttaaaa       240
     cttaacgtac aaggattttc tgcttgcgat gatgcttatt tgtatgttga aaaatcgcaa       300
     ggtcctaaag gtcaaggtaa aacaaatttt tgtttctttt gtaacaaaat gcaaacaaaa       360
     atagctcgac atttagaaaa tgtacataaa gatgaggagg aagtaaaaaa gtttagattt       420
     ctgccaaagg gtaatgtaga gcgtaaaaaa ttgatagatt ctttaagaag aaaagggaat       480
     tttttatata atgtagatcc acaattcaat actggaaatt taataacatg tagacgacca       540
     caaaagaaat taaaacgtga tgctacagac tttgcaccat gtatcaaatg taaaggtttt       600
     tttgctaaaa atagccttag acatcactat aaaatttgta atcaaaacaa gaaacaagaa       660
     gaacaaactg taaaatcaac attaactcta gcacgtaaaa tagttggtcg aattcataaa       720
     gatgcttgcc aacaattacg agagtatgtt ttaccaataa tgagggaaga taatatagta       780
     agactaatta gatacgattc cgttattatt aaatatgcta ataaaatgtg caaaaaatat       840
     agtttacaac atcaacatga tatgataaga gctcatctca gacttctggg tcgtttttta       900
     attgctttga aggaaattaa tcctgaaatt acggattttg catcacttta caatccaaaa       960
     ttttatgatt cagcaatcag agcggtaaat atagttgctg gcttaaatga aacaacatat      1020
     atatacagaa ctcctactgt tgcttccaca cttggcattt gtataaaaaa gataggtcaa      1080
     attttagaaa gtgaatatat taaagaacat gataaagtaa aaaaagaata tgttcatgac      1140
     tttctgtctc ttcttgaaga agattatggc tgtactgtaa ataaagttgt actaggaaga      1200
     tggctgtact gtaaataaag ttgtactaga aagtcggatt gcaaaaaagc gtaatgaaaa      1260
     agtgatacta ccattgaaaa ctgatattgc taaattgaat caatatataa caaatttacg      1320
     cgaaaaatca tataagatat tacaacataa atttacatat aaagcttggt taactttagc      1380
     gaaaactact cttatttaca ttcaaatatt taatcgtcgg agagcaggtg aaacagaacg      1440
     attattaata agtgatctta aaaaatctga aaaaattgat gaaagtgatg agcagtatcg      1500
     aaaattacat ccagaagaca aagaaactgc ggcaaagtac agacgcgtca ttattcgtgg      1560
     gaaactcaca agattcgttc cattattatt agattttgaa atgcgtaaaa gcttaaaagt      1620
     tattttaaaa ttccgaaaga atgcaggtgt ttcttctaaa aatccatatg tattcggaat      1680
     tcccggatat cataacaaac gtcataagta tctcagagct tgtatgttat tgcgtcaatt      1740
     tgttcatgaa tgtgatgcta aacgtgcaaa aacattacgt ggtactattc ttcgaaagca      1800
     cattgcaaca acatgtgcga gtttagattt gccagaaaat aa                         1842
//
ID   CryptonV-11_CFl repbase;    DNA;    INV; 1854 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-11_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1854
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 800-800 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01003386     298 2151.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1197,1169..1633,1637..1852)
FT                 /product="CryptonV-11_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers."
FT                 /translation="ISINIYNILIILDSQNNDNFSDSHSEYNLSEYSSEED
FT                 DEYISNNTSANKISRKSDSFNNSGLNISLTNNIHSKSSRNDEEMYIESAPP
FT                 KGSKRTFRKHFCLFCKTWQSKIRHLERKHKEEKRVKDFSDLPKKSSKRKNL
FT                 INMLRKEGDFYYNINNDVNSGELIICRKPAEKSKNTAQDYTACPKCKGFFN
FT                 KLNLRHHTAHCIDQKRKGIKVCNVLSRQIMGRYASQADNILRQIVMPRCRD
FT                 DRITRLIRYDQLIMEYGNKLCLKYPSPHHHDMIRQQLRQLGHFLSEIRQHC
FT                 QDIDDLSSVYHPKYYKICIDVINILAGFDTSTRTYKIPSLATSLGTLLKTT
FT                 GKTLISLTIFEDNVVKQKQVEHFLILLNNEYGPAVNKVALETQEQLKRKKK
FT                 VILPSKEKRKLSFLPDDIKKLDNFLKMQRTIALNNLKQKYSFKDWLKLSES
FT                 TLILIQLFNRRRAREMERTLIENYKNYIKIDPETNMDAFNALSLECQKIAI
FT                 EYVRFTIRGKFNRTVSVLLNSELQECVELILQYRKNAGVSSTNPYVFGIPN
FT                 IDLRKQTLKACDLMRKFSIECGADQPETLRDITLRKHVATLGVNLNLTDTE
FT                 ISDLVNFMGHEEKIHRERYRMPIVHREI"
XX
SQ   Sequence 1854 BP; 728 A; 267 C; 290 G; 569 T; 0 other;
     atttcaatca acatttacaa tattttaatt attttagatt ctcaaaataa tgataacttt        60
     tctgactcac acagtgaata taatttatct gaatattcat ctgaagaaga tgatgaatat       120
     atctcaaaca atacatctgc aaataaaatt tcaagaaaaa gtgattcttt caataattct       180
     ggattaaata tttcattaac aaataatatt catagtaaat catcgcgcaa tgatgaagaa       240
     atgtatattg aatcagctcc accaaaagga tctaaacgta cttttagaaa acatttctgc       300
     ttattttgca aaacgtggca atccaaaatt agacatttag agagaaaaca taaagaggaa       360
     aaacgagtaa aagattttag tgacttacca aaaaagtcta gcaaaagaaa aaatttaatt       420
     aatatgttac gaaaggaagg agatttttat tataatatta ataatgacgt gaatagtggt       480
     gaattgataa tttgcagaaa acctgctgaa aaatctaaaa acactgcgca agattatact       540
     gcttgtccaa aatgtaaagg attctttaat aaactaaatt taaggcacca tacagcacat       600
     tgcattgatc aaaaacgtaa aggtattaaa gtttgtaatg ttcttagtcg gcaaataatg       660
     ggtagatacg caagccaagc tgataatatt ttacgccaaa tagtaatgcc acgatgtcgt       720
     gacgacagaa taacgcgtct tattcgttat gatcaattaa ttatggaata tggaaataaa       780
     ctttgtctaa aatatccatc tcctcatcat catgatatga tacgacagca attgagacaa       840
     ctcggtcatt tcctttcaga aattaggcag cattgtcaag atatagatga cttgtcatca       900
     gtttatcatc caaaatatta taaaatatgt atcgatgtca taaacattct tgctggtttt       960
     gatacttcaa caaggactta taaaattccg tcattagcaa cgtcattagg cactttatta      1020
     aaaactacag gaaaaacact aatttctttg acaatatttg aagataatgt tgtaaaacaa      1080
     aaacaagtag aacatttttt aattttgtta aataatgaat atggtccagc agttaataaa      1140
     gttgccttag aaacgcaaga gcaattaaaa agaaaaaaga aagttatcct tccttcctga      1200
     cgatataaag aaattggaca attttttaaa aatgcaacgt actatagctt tgaataatct      1260
     aaaacaaaag tattcattca aagactggct aaagctctct gaaagtacat taatattaat      1320
     acagttgttt aatagacgaa gagcaagaga aatggaaagg actttaattg aaaattacaa      1380
     aaattatata aaaattgatc cagagacaaa tatggatgcg tttaatgcac tttcgcttga      1440
     atgtcaaaaa atagcgatag aatatgtgcg gtttacaata cgtggaaagt tcaaccgtac      1500
     tgtatctgtt ttattgaact ctgaattaca agaatgtgta gaactaatcc ttcaatacag      1560
     aaagaatgct ggtgttagct caacaaatcc ttatgttttt ggtattccca atatagatct      1620
     tcgtaaacag acataattaa aagcatgtga tctaatgcgc aaattttcaa ttgaatgtgg      1680
     agctgatcag cctgaaactt tacgagatat tactctacgt aagcatgtag caacattagg      1740
     agttaacctg aatttgacag ataccgagat atcggacctt gttaatttta tgggacatga      1800
     ggaaaaaatt catcgtgaac gttatagaat gccaatagtt catcgagaaa tttt            1854
//
ID   CryptonV-12_CFl repbase;    DNA;    INV; 1980 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-12_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1980
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 801-801 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01015020    3767 5746.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..612,575..955,910..1128,1064..1420,
FT                 1345..1977)
FT                 /product="CryptonV-12_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers."
FT                 /translation="QNKESSESEYIPSSDEDEQNALNDELPQKRISINTTK
FT                 TSNSSLDASLINNGAATCNDEIMYVETSNLKSGKRNFCVFCAKLQTQLARH
FT                 LEMVHHNEPEVKKFASLPKNNPERRKIIDTLRRNGNFKFNTNSHVNDGRLI
FT                 VCRRPNKKYHRLATDFTACAKCKGFFAKSTIRHHSRHCFEKNFKKNRCVMI
FT                 IGRKVTCRLHPSYVVEKLRVDYTQVTCRLANSVLRKTVFPIMREDNVTRLI
FT                 RYDELLILYANKLCIKYKAQHQHDMIRARLRVLGRFLLALKEINTSVENFT
FT                 SVYHPRVYDDYIGAINVVVRYNNEKKCMKLLQLQQIYQLEKMYEAPAVAAN
FT                 LSTLIKHIGNLLITECIKKENAEKKKLVKDFLKLLTVDITTSVNKTVLETQ
FT                 STQKRHKKKTQQVSIKLYWKHSRLKKDIKKRHKKVNLPSVDDIKKLYKYLE
FT                 KKRIEAFNMLQQSFLYCNWLSLAEVTLISIQVFNRRRAGEIERILIKDFQN
FT                 YERLTKICTAIFITHYHKSIKRLLKNIKTYKNMYGDIYNSLSQEHKKIAEK
FT                 YIRFCIRGKLGRTVPVLLSNALFECINLIIKYRREAKVSEKNPYIFGLSGD
FT                 NKNRYRYLRACVLMRKFADECNAIQSNSLRGTVLRKHVATYCIQLNLNDIE
FT                 VSDLATFMGHSEKIHKNHYRQPLVTRDILKIFQYLEAVQGNQHSSDESSTE
FT                 SNLDNESLNDQLKENSFEMEERENIYLGNYMSIF"
XX
SQ   Sequence 1980 BP; 775 A; 280 C; 340 G; 585 T; 0 other;
     caaaataaag aaagtagtga atcggaatat ataccatctt ctgatgaaga tgagcaaaat        60
     gcattgaatg atgagttgcc gcaaaaacgc atatcaataa acacaactaa aacttcaaat       120
     tcaagtttag atgcctcact aattaataat ggtgcagcta catgcaacga tgagattatg       180
     tatgtcgaaa catctaatct gaaatctgga aaacgaaatt tttgtgtttt ttgtgcaaag       240
     ttgcaaacac aacttgcacg acatcttgaa atggtacatc ataatgagcc ggaggtaaaa       300
     aagtttgcta gtttacctaa aaataatcca gaaagaagga aaattataga tactttgcga       360
     agaaatggca attttaaatt caatacaaat tctcatgtaa atgacggacg acttattgta       420
     tgtagacgac ctaataaaaa atatcacagg ctcgctacag atttcactgc ttgtgcaaaa       480
     tgtaaaggtt ttttcgcaaa atcgacaatt cgtcaccact ctcgacattg ttttgagaaa       540
     aattttaaaa agaatcgttg cgttatgatt ataggtagaa aagttacgtg tagattacac       600
     ccaagttacg tgtagattgg caaatagtgt gttaaggaaa acagtgtttc ctataatgag       660
     ggaagataat gttacacgtc ttatcagata tgatgaacta ttaattttat atgcaaataa       720
     gttatgcata aaatacaaag ctcaacacca gcacgatatg attcgtgcta gattacgtgt       780
     tcttggacgc tttcttttgg ctttaaaaga aataaataca agtgtggaaa actttacatc       840
     ggtctatcat ccgagagtgt acgatgatta tatcggtgca atcaatgtag ttgtaagata       900
     taataatgag aaaaaatgta tgaagctcct gcagttgcag caaatttatc aactttaatc       960
     aaacacattg gaaatctgct tattactgaa tgtataaaga aagaaaacgc agaaaaaaag      1020
     aaactggtca aagatttctt aaaattatta actgttgata taacaacaag tgtcaataaa      1080
     actgtattgg aaacacagtc gactcaaaaa agacataaaa aaaagacata aaaaagtcaa      1140
     tctaccatca gtggacgaca taaaaaaatt gtataaatat ttagaaaaaa aacgaattga      1200
     ggcttttaac atgctacaac aatctttttt atattgcaac tggctttctt tggcagaagt      1260
     gacactgatt tctatacaag tttttaacag acgacgagca ggagagattg aacgtattct      1320
     tatcaaagat tttcaaaatt atgaaagact tacaaaaata tgtacggcga tatttataac      1380
     tcattatcac aagagcataa aaagattgct gaaaaatata taagattttg tataagaggt      1440
     aaattaggac gtacggttcc tgttttgtta tcaaatgctt tatttgaatg cattaattta      1500
     attataaaat atcggaggga agcaaaagta tctgaaaaga atccttatat ttttggatta      1560
     tccggtgata ataaaaatag atatagatat ctcagagcct gcgttttgat gcgaaaattt      1620
     gcagatgaat gcaatgcaat tcaatctaac tctttacgtg gtacagtgct gcgaaaacat      1680
     gtggcaacat attgtataca actaaatctc aatgatattg aggtctcaga tcttgctaca      1740
     tttatggggc attctgagaa aatccataaa aatcattaca gacaaccatt ggtaacaaga      1800
     gatatactaa aaatttttca atacttggaa gctgtccaag gaaatcaaca ttcaagtgat      1860
     gaatcctcaa cagaaagtaa tttagataac gaatcgctaa atgatcaatt aaaagagaac      1920
     agctttgaaa tggaagaaag agaaaatata tatttaggta attatatgtc tatattttta      1980
//
ID   CryptonV-1_BTa repbase;    DNA;    INV; 5054 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, a sample sequence.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5054
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 255-255 (2018).
XX
DR   [1] (Consensus)
XX
CC   Two almost identical copies in the genome. This is one of them
CC   without other insertions. Termini are almost determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           813..3119
FT                 /product="CryptonV-1_BTa_1p"
FT                 /translation="VTEVTKKSRTWNRTNACPYCRPFILITNFTRHLKRNH
FT                 AGEDEVLDLARIVAESDSKEDLKIRKKRRTELTEKLRLKANYAYNVAVMNK
FT                 EVEGSLLPVRRSNCTDSVMNEENHATCAYCQGLFARNTLYLHVPICKMNTS
FT                 KDLNTSGTKRRVLRTSAIMLSAGPKEASKELKELVFPRLQHGEVSLIAKSD
FT                 PLIVQFASRMIKKHFEKGKINYIKNCMRDLARFFIEMKKIDSNLKNLEACF
FT                 QVKQYNNVILTIQCMCGIDYDTNKVSSPSVAARLKGAIAKCIDIIYCNALM
FT                 DQTDHVAIKSELDQFMHLLTTNWQYEISGRTNRAQKQNKMHKEEVLPDSQD
FT                 ILDACLKIEKHEVDLSRELMRNPCNLVYKNLTKLVIAHLIILGRKRPGEVC
FT                 CAEVKDFNNRKSADKESNEEYIQVLSEEERKSYDALLSFHIIGKGTEPVCV
FT                 ILTRKMDDLIRLLIRYREKVSIDPENPLLFPQPDSELLYDGSKCIDYVKDL
FT                 CKLRKPVHFNAIGLRHHMATKVQLMNKGEQFTEQVARQLGHSVNVHKKNYR
FT                 LPLSVIQRGIVGHEMLKMTGGTSVASAPTGESKTQESDRINQCDMNSANLN
FT                 ENVETSETVNVSNVSASKSDSESSESDNDIVKIKERFRTRKEKTKKASQEN
FT                 QTLNHSLPAETFTHYSSESELSNFSEELDVQSKIKTLKKMRSDTNSLSKVK
FT                 RTPWTHEEKKAVFRHLSHCIIAGSAVRQTDILKALKEEALCNRTVAQVRTY
FT                 LNNIKTRKVAFPAEYLNL"
XX
SQ   Sequence 5054 BP; 1607 A; 875 C; 870 G; 1702 T; 0 other;
     cagtcattta aagtcttgaa atttacagcg gtttgatgaa tataatttgt ttaacaatgt        60
     taccttctaa atactatgac caacttttaa caataggcgt atcaataaca tttatttttt       120
     caaaatttgt actccatgta agccacagtt taattgatca aaaattagtt tgagggtcga       180
     aaaattgcct gatttggaag aagttctgta aaaattttta catcaaccag aaaagcacac       240
     ctacaaacac aattgcagaa gtctgcttac tttttctcag attttcaatc aatgtatata       300
     ttttgtaatg tattctttga ccctcgaacc agttattcag ttattggtaa atcttctatg       360
     atatttcttg agtgtaaatt ggaaaaaata tggataaaat accggggcat ctacattcaa       420
     aattttgtcg ttttatttga aaagtaacat atctaataaa atattttcat caaaactttg       480
     caaatttcaa agtttaaaat aactgagcga aaaaatgata cgaaatagac gactattcat       540
     aatttgcgca ggtttacaaa gatacctagt ctatacattt aggtcaattt aaaaaataac       600
     tctaagcctg gttgcggaaa taataatgta ttttcagggc tagtacctac ttctgcttaa       660
     tagcaaattg ttattctgac gaggtcattc actttacagg ataatatcac ttgaaatatt       720
     tatgtgcttt tcatcagatg gtcaggcagt ttaatttcta tgcaaaaact caataacatc       780
     ttctctaata cctctacatt tttcccctgt aggtaacaga ggttacgaag aaatctcgaa       840
     cttggaatcg gactaatgca tgtccatatt gcagaccgtt cattctcata acaaatttca       900
     ccagacacct caaaaggaat catgccggag aagatgaagt acttgacttg gctcgaattg       960
     tcgctgaatc tgattcaaaa gaggacttga aaattagaaa aaaaagaaga acggagctca      1020
     ctgaaaagtt aagactgaaa gccaactatg cttataatgt agctgtaatg aataaagaag      1080
     tggaaggttc actccttcca gttcgacgat cgaattgcac cgactctgta atgaatgaag      1140
     aaaatcatgc aacatgtgct tactgccaag gtctgtttgc aagaaacact ctgtatcttc      1200
     atgtgccaat ttgtaaaatg aatacctcta aagatttgaa tacttcaggt acaaaaagaa      1260
     gagtgctaag aacaagtgca ataatgttat cggctgggcc taaggaggct tcgaaggagc      1320
     tgaaagaatt ggttttccct cgcttacaac acggagaagt atctctcatt gctaagtcgg      1380
     accctcttat tgttcagttt gcctcgcgta tgatcaaaaa acattttgaa aaaggcaaga      1440
     taaattacat taaaaattgt atgcgagatc tggctagatt tttcattgag atgaaaaaaa      1500
     ttgattccaa tttaaaaaat ttagaagcgt gctttcaagt caagcaatac aacaatgtca      1560
     tacttactat tcagtgcatg tgtggaatcg attacgacac aaataaagtg tcctctccga      1620
     gtgttgctgc tcgattgaaa ggtgctattg caaagtgtat tgatataatc tattgtaatg      1680
     cactaatgga tcaaactgat cacgtggcca ttaaatctga gctagatcaa tttatgcatt      1740
     tactaactac aaattggcag tatgagattt caggtcggac aaaccgggcg caaaagcaaa      1800
     acaaaatgca taaagaagaa gtccttcctg atagtcaaga tattttggat gcatgcttaa      1860
     agattgaaaa acacgaagta gatttgtccc gagaactaat gcgaaatcct tgtaacttag      1920
     tttacaaaaa tctaaccaag cttgtcatcg cccacctgat tattctcgga cgcaagcgtc      1980
     ctggagaagt gtgctgtgct gaggtaaaag attttaataa tcgcaagagt gctgacaagg      2040
     agagcaatga ggagtacata caagtgttgt ctgaagaaga aagaaagagc tatgacgctc      2100
     tcctttcttt ccacattatc gggaaaggca ctgaacctgt ttgtgtgata ttaacccgta      2160
     aaatggatga ccttatcaga ttactaattc gctatcgaga aaaagtaagc atcgaccccg      2220
     aaaatccatt attatttcca cagccggatt cagagttact gtacgatgga tctaaatgca      2280
     tagactacgt aaaggatcta tgtaaacttc gaaaaccagt tcatttcaat gctattggtc      2340
     taaggcatca catggcaacc aaggtgcagt taatgaataa aggagagcag ttcacagaac      2400
     aagttgccag acagttgggc catagcgtca atgtgcacaa gaaaaactat agacttcctc      2460
     tatcagttat tcaacgtggc attgtagggc atgagatgct gaaaatgacg ggaggtacct      2520
     ctgttgcctc agctccgact ggtgagtcaa aaacccaaga atctgatcgc attaatcagt      2580
     gtgatatgaa cagcgccaat ctgaatgaga atgtagaaac ttctgaaact gtcaatgtca      2640
     gtaatgtgtc tgcttcaaag tcagattcag agtctagcga gagtgataat gatattgtga      2700
     aaattaaaga aaggtttaga actcgtaagg aaaaaaccaa aaaagcctct caggaaaatc      2760
     aaactctgaa tcattctctc ccagctgaaa catttacaca ttattcctct gagtctgaac      2820
     ttagcaattt ttctgaagag cttgacgttc aatcaaaaat aaagacactg aaaaaaatga      2880
     gatctgatac taactctctg agcaaagtta aacgaactcc ttggactcat gaagagaaaa      2940
     aagctgtatt ccgccacttg tcacattgca taattgctgg tagtgcagtt cgacagactg      3000
     acattcttaa agcgctaaag gaagaagcac tgtgtaatcg tactgttgca caagttagga      3060
     cttacctaaa caatatcaaa acacgcaagg ttgcatttcc agcagaatac ttaaacctgt      3120
     gaaaatcctt ttgaaaaagt caatttctga agcaatcttc tattctttat aatcgaaata      3180
     ttattatgtg tgctttctct cagttcggag gttacctctt taaagtgatt catggtgatc      3240
     aaaccacgtg atttatcaat ggttatctac tatatacgaa tggatttttt aatttttttt      3300
     ggtggataaa ctggaatcat caaaacctgt agctgtatct caagaagata tttgcagaat      3360
     tgagacgttt aaatttacat aataagagtg ttattacagt agagagctct cttgctgctt      3420
     gatctataat atcgcactgt gatagtgctc tctagcaaaa tggattggaa catcccagct      3480
     ttccagatat cttcttcaga actgttaaca gaccccaacc atgctcagtt ttcagaaaaa      3540
     aaaaaaaaga aaaaaaaaat ctggtgaatt cccactagtt gatcaacctc taagataatt      3600
     aaaattccct tcataagtcc ctttataaaa ttccacctac ataagttgaa tgattaaagc      3660
     tttttcacaa agctcttcct ttcttagagc taaatataat tatctttgat ttttcacctc      3720
     ttcattaatg tttcatattc ttttacgttc aaagtaattt ttctcatata atgtagttta      3780
     cttttttttg ttctgggctg gatacttact tagaagactg agaaaaagtt tccttgttta      3840
     cctatttttt atttgtagtc acttacatat cctgttcatg tttaattttt atctatgtta      3900
     aaggtttctt cttgtgttta tttttgagtg ttattaataa acagggtgtt ggaaaagtcc      3960
     ccgcctcccc acccccctcc aactttttga aagataaaag aaaattctag gagaatgttt      4020
     ctatctgaaa gggaaccatc ttctcgcgag ggaggcggag ggtcaaactt ttgaccttgc      4080
     tctttagggg aggggcccca acctttttgt tttggtaatt ttttccattt tatttttttc      4140
     tactatagtt gtaactggag ttatgatatc ttatactata tctaacttgg tcaagaatca      4200
     agttaccaag ttgcggttcg agccaaaatt cctagtttcc aatactactc cgtagttatt      4260
     gtttaaaaaa gaaaaaaaag gttggggact ctccacccaa gcagggctgg ggcacttgtt      4320
     aagatttcat tttcctcaag ttttcttttt aaaattaatg cttaatgttt tttttttttt      4380
     tttttttttt ttttttttat atcagggtta aattatttgg tcgttgctgc tatttaacat      4440
     ttaaattcct gagttttttt tgtctctggt gcaaagtttt gtgattttct tttgtgtaat      4500
     gacaagctgg gctgtctatg tttgcaactt atctcatctg ttactcgcct tttctcacag      4560
     agttcagtca ttattgtatg tttaagttta tttcacctat aataagtttt ttcctgaact      4620
     ttatattttc ctactaatga tattaatatt tatttctttc attattttac tttccttttt      4680
     attcctaaca aaattctact ctgaaaagtt actcaagaaa tatgcaaccg tgctagattg      4740
     gaggccttta gtaaggtttc ttttccctca agttttgtta ttaaaactca tgcttaagtt      4800
     cttttctttt ttttgtaatt ttaatcaggg ttaaattatt cggttgtctc tgctatttga      4860
     catttaaact cttgagcttt ttctatctct ggcacaaagt tttgtgcgtt tattttgttt      4920
     aataactttg tgcttttatt ttgtttaata acaagctgtc tatgtttgca atttatctca      4980
     tttatgttac ttaccttttc tcactaagtt aagttattat tgtatgttta agctcgtttt      5040
     acctttaaaa agtg                                                        5054
//
ID   CryptonV-1_CFl repbase;    DNA;    INV; 2085 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2085
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 786-786 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01017271    7076 4992.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2082
FT                 /product="CryptonV-1_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="SLCFSLILDNDNDKSNDEGSEYIHSEHSSLHSESPEN
FT                 QMPIVNRTVSSTSSFDTSNTNVVGTSACNDEVMCVQKSNIKSKQNYCVFCM
FT                 KLQSQLARHLETVHLNEPDVKKFAILPKKNPERKKIIDTIRKMGNFKFNTN
FT                 SEFNTGQLIVCRRPNEKTNKTAKDFVACVKCKGFFAKSTIRHHARVCLNKD
FT                 FRKNKNIMIMGRKITGRIHSIASECLRKTVFPVLREDDVTRIVRYDKLLII
FT                 YANKLCVKYISQHQHDMIRARLRLLGRFLIALKEINTNVEDFQSLYHPQIY
FT                 DDCISAINVVAGYDNEEQLYKTPAVAANLSTLIKHIGNLLIMECIKAQDEE
FT                 KKKLVKDFLKLLVVDIGTSVNKTVLETQSAHKRHKKINLPSLEDIKKLYTH
FT                 LAKIRTEAYAALNESFSYEKWISLAEVTLTSTHVFNRRRAGEIERALIEDF
FT                 ENYEKVNKNMYSDIYKSLSMEDRKIAEKYVRFCIRGKLGRTVPVLLTNELF
FT                 DCITLILKYREKANVPKKNPYIFGLPAVDKNRHRYLRACVLMRTFAEQCNA
FT                 NQSTTLRGTTLRKHVATHCIQFNLNDTDVSDLATFMGHADKIHRDHYRQPI
FT                 ASRDILKISRYLEAVSEGNTQNINDESMSDSDFEIEDNLVEVNNNNTDETS
FT                 NVICLNHYVRRRIYNTNIYIIYIFNWFYVGLMLIYFILKYSFCIL"
XX
SQ   Sequence 2085 BP; 790 A; 307 C; 355 G; 633 T; 0 other;
     tctctttgtt tttctttgat actagataat gataacgaca aaagtaatga tgaaggttca        60
     gaatatatac attcagaaca cagttcttta catagtgaat ctcctgaaaa ccaaatgcca       120
     attgttaata gaactgtttc atccacttcc agttttgata catcaaatac aaatgttgtt       180
     ggtacatcag catgtaacga tgaagttatg tgtgttcaaa agtcaaatat aaaatcgaaa       240
     caaaactatt gtgttttttg tatgaagttg caatcacagc ttgcacgaca tttggaaaca       300
     gtacatctta acgagcctga tgtaaaaaaa tttgccattc tgcctaaaaa aaacccggaa       360
     aggaagaaaa taatagatac tattagaaaa atgggtaatt ttaaatttaa caccaactca       420
     gaatttaata ctgggcaatt aattgtatgc agacgtccga atgagaaaac taataagact       480
     gctaaagatt ttgttgcctg tgtaaaatgt aaaggatttt tcgcaaaaag cacaatacgt       540
     catcatgctc gagtttgtct taacaaagat tttcgaaaaa ataaaaatat tatgattatg       600
     ggaagaaaaa tcactggtag aatacattca atagcaagtg agtgtttaag aaaaacagtg       660
     tttcctgttc tgcgagagga tgacgtaaca cgtattgtga gatatgacaa attattgata       720
     atatatgcaa ataagttgtg tgttaaatac atatctcaac atcagcatga tatgattcgt       780
     gcacgattgc gtctactagg ccgttttctt atagcattaa aagagataaa tacgaatgta       840
     gaagattttc agtcgctgta tcatccacaa atatatgacg actgtatttc agcaattaat       900
     gtagttgcag gatatgacaa tgaagaacaa ctttataaaa ctcctgcagt agcagctaac       960
     ttgtcaacac ttattaagca tataggaaat cttctcatta tggaatgcat caaggctcaa      1020
     gatgaagaga aaaaaaaatt agttaaagac tttttaaagc tgttagttgt ggatataggt      1080
     acgagtgtta acaaaacagt cctcgaaacc cagtccgcac ataaaagaca caagaaaata      1140
     aatctcccgt cattagaaga tattaaaaaa ttatacacac atttggcgaa aattagaact      1200
     gaagcatatg cagcattaaa tgagtccttt tcatatgaga agtggatttc cttagcagaa      1260
     gtaacattaa cttcaacaca tgtctttaat agacgacgag caggagaaat tgagcgagcc      1320
     ttgatagaag attttgaaaa ttatgaaaaa gtaaataaaa atatgtacag tgatatttat      1380
     aaatcattat cgatggaaga tagaaaaata gcagagaaat atgttcgatt ttgcatcaga      1440
     ggaaaactgg gacgcacagt acctgtttta ttaacaaatg agctctttga ttgcatcact      1500
     ttaatcttga aatatcgtga aaaggctaat gtaccaaaga aaaaccctta tatttttgga      1560
     ctacctgctg tcgacaaaaa tagacaccga tacctgagag cctgtgtttt aatgcgtaca      1620
     tttgcagaac aatgtaacgc aaatcaatca actactttgc gtggtacaac attaagaaaa      1680
     catgtagcaa cacactgcat tcaatttaat ctgaatgata ctgatgtttc ggatcttgcc      1740
     acatttatgg gtcatgctga taaaatacac agagatcatt acagacaacc aatagcaagc      1800
     agagatatac tgaaaatctc ccgctattta gaagcagtat cagaaggaaa tacacaaaat      1860
     ataaatgatg aatcgatgtc ggacagtgat tttgaaatag aagataactt agttgaagtt      1920
     aataataata atactgatga aacaagtaat gttatttgct taaatcatta tgtaagacgt      1980
     agaatttata acactaatat ttacattatt tacattttta attggtttta tgttggtttg      2040
     atgcttattt atttcatact taaatattct ttttgtatat tattt                      2085
//
ID   CryptonV-1_HSal repbase;    DNA;    INV; 3159 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3159
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 787-787 (2014).
XX
DR   [2] (Consensus)
XX
CC   Fragment.
CC   AEAC01013173    7301 10459.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..2217
FT                 /product="CryptonV-1_HSal_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase (partial)."
FT                 /translation="MTLLRFYIILCYIYAILGNDNDEDPEYIPSEQSSLDN
FT                 ESPQNHVRVVNKTISSASSFDTSNINVGTSACNDETMYRENSIAKSRKQHY
FT                 CTFCMKPQSQLPRHLETVHYNEPEVKKFVTLSKKDPKRKEIINIIRKMGGF
FT                 KFNTNSELNTGKLIVCRRPNERTKRIATDFIAWVKCKSFFAKRTIRHHSRV
FT                 CLKKDFRKNKNIMVMDRKIMGRIHAMANEALRKTVFPVMRDDEVTRIIRYD
FT                 ELLILYGNKMCIKYKSQHQHDMIRARLRVLGRFLLTLKTINKNIEDFQSLY
FT                 HPQIYDDCVAAINIVAQFDNEKQLYKTPAVAANLSTLIKQIGNILITQCIK
FT                 RQDEEKKKLVKDFLKLLVVDIGTSINRTVFETQSAHKRHKKINLPSLQDIK
FT                 KLHKHLEKTRIKAYAALKESFSYEKWISLAEVTLSSIYVFNRRRAGEIERA
FT                 CVEDFENYERINKNMYSDIYESLSIEDRKIAERYIRFCIRGKLGRTVPVLL
FT                 SNDLFDCVTLILKYHKEANVPKKNPYIFGLPSINKDRYRYLRACPLMRKFA
FT                 R"
XX
SQ   Sequence 3159 BP; 1161 A; 456 C; 498 G; 1044 T; 0 other;
     ttctgattaa ctatagttct tgttgccttt tatctatcta ttttatgtat ctattttgtg        60
     tatatgtatt taacacacat gtatatgtgc acgcacatac atacacacac gcacatatct       120
     caacatactg cacgtgtatg caggatattt cacgaaatga agtatcaagt aaaaaatata       180
     aatgtagatt aggtcatgaa caaaataatt ctttactatt ctattatgca aataaccacg       240
     taaaatgata ttaattattg aaaattttct ttttcctttt ttcctgttcc ttttcctgtt       300
     cggtacttat tgttaactct tgataacatt actttatata ttaatgaata tatttatatt       360
     gaactatata cccagtaaac ataaagtatc atcgatgtta caatgtcagc taaatcatat       420
     gatgttacgt aactgttact ttgtatataa taaagcaact gtcatgtaac ataccatatt       480
     tagctgattt agctgacatt gtaacatcga tgatactttg tgtttactgg gtatatgtta       540
     gttcttaagc tgtgatcttt attttatata gttatgacat tacttcgttt ttatattata       600
     ctatgttaca tttatgctat actaggtaac gataacgatg aagatccaga atatatacct       660
     tcggaacaaa gttcattaga caacgaatct ccacaaaacc atgtgcgagt tgttaacaaa       720
     actatatctt ctgcttccag ttttgatact tccaatataa atgttggtac atcggcatgt       780
     aatgatgaaa ctatgtacag agaaaattct attgcaaaat caaggaaaca acactattgc       840
     acattttgta tgaagccaca atcgcaactt ccacgccatt tagagacagt tcattacaat       900
     gagcctgaag ttaaaaaatt tgtcacgctg tctaagaaag atccgaaaag aaaagaaata       960
     ataaatatta ttcgaaagat gggcggcttc aaatttaaca caaattcaga attgaatact      1020
     gggaaattaa ttgtctgcag acgtccaaat gaaagaacta agaggattgc tacagatttt      1080
     attgcttggg taaaatgcaa aagttttttt gctaaaagaa ctataagaca ccattctcga      1140
     gtttgtctta aaaaagattt ccgaaaaaat aagaatatca tggttatgga cagaaaaatt      1200
     atgggtagaa tacatgcaat ggctaatgag gctttaagga aaactgtatt tcctgttatg      1260
     cgagatgacg aagtaacacg tattatacga tatgatgaat tactgatttt atatggtaac      1320
     aagatgtgta taaaatataa gtcgcaacat caacatgaca tgatacgtgc acgattacgt      1380
     gttcttggac gtttcctgtt aacattgaag acaataaata aaaatataga agattttcag      1440
     tcgctgtatc atccccagat atatgatgat tgtgttgctg ctattaatat agttgcacaa      1500
     tttgataatg agaagcaact ttataaaact cctgcagtag cggcgaattt gtcaacactt      1560
     attaaacaaa taggaaatat tctcattacg caatgcatta aaagacaaga cgaagaaaaa      1620
     aagaaattag ttaaagactt tctaaagtta ttagttgttg acattggtac cagtattaac      1680
     agaactgtgt tcgaaacgca atcggctcat aagagacata aaaagattaa tcttccatcg      1740
     cttcaagata ttaaaaaatt gcacaaacat ttggaaaaaa caagaattaa agcatatgca      1800
     gcattaaaag aatctttttc gtatgaaaaa tggatttctt tagcagaggt gacgttatct      1860
     tctatttatg ttttcaatag acgacgtgca ggagaaatcg aacgagcatg tgtagaagat      1920
     tttgaaaatt atgaaagaat aaataagaat atgtacagtg atatttatga atcactatcc      1980
     atagaagata gaaaaattgc cgagagatac attcgatttt gcatcagagg aaaattggga      2040
     cgtacagtac ctgtattatt gtcgaatgat ctttttgatt gtgttacttt aatattgaaa      2100
     tatcataaag aagctaatgt accgaaaaaa aatccttata tttttggatt accttcgatc      2160
     aacaaagata ggtaccgata tttaagagct tgtcctttaa tgcgtaaatt tgcgcggtag      2220
     tgtaatgcaa atgagtcaac tactttgcgc ggtacgacac tacgaaaaca tatagcaaca      2280
     cattgcattc aattcaatct caacgacgtg gatgtttcgg accttgctac atttatgggt      2340
     catgctgata aaatacatag agagcactat aggcaaccgc aggcaagtag agatatactc      2400
     aaaatttttc gatatttaga aactgtacca gggtatgtgc aagacataaa caatgaatct      2460
     gcattgtccg atgactctgg taaagaaaat acaatggaag acactaatat tactgacgaa      2520
     aataatacta ctgaaaaagg taatatagtc ctactaaaca caatataata tgtaatatgt      2580
     acatgcgtgt gttgtcagat cagattgtaa tgagataaac tgatatgtaa atattttgta      2640
     tttgctggtt tggttcatta tataagaatg tataagaata tataagaata tataagaata      2700
     taatgtaaat tataatgata ttaatattca aatgtattat attgcactca atgtggttga      2760
     gtttaaatta tataaagata tatttattgt attactcaaa aaagttgtaa tacatatcgt      2820
     ttattgtaga catttcatca tataacgcaa gggattccat agaaatgaat tgtcaaaact      2880
     taatagataa acgaagtgga aaaaggaaac gttgcagtaa gtagtttttc ttatcagttt      2940
     ccaatctata attaagtatt ccaataatac aaattttttg ttttctttct acacgtatat      3000
     atacttatct tatacttttg ttcctttttc gctatatttg tacacacttg taatgtattt      3060
     tcctacaatt tctactgaac atacatataa ctgtgattta atatatttaa aaaaataaat      3120
     acaataaaat accacataca cttatacgca tgagcacac                             3159
//
ID   CryptonV-2_CFl repbase;    DNA;    INV; 2496 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-2_CFl.
XX
NM   CryptonV-2_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2496
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 788-788 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01027801     3352 857.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2493
FT                 /product="CryptonV-2_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="ALIRISDFVKSTGYSTPISKTSPSIESQIDKRLTAIY
FT                 QNSLTGSNSSTESSTPSGATKIMEFIGDDWLKSSSVESNVLKENISSNSEE
FT                 QAVGNFDKIIENEQEFRDHIADLPLQKNIESSIIEEIVSKEIDDARIKNKN
FT                 ENNDSDYVLSSSISTINRTKSNVSDNLNFPINNDALPVDIREIHMSDSKNE
FT                 DGGYSLKQYFCPYCKKLQKKFARHLELKHKNISDVQKFIHFSKGNPERRKI
FT                 IEKIRKYGNYLHNTDADLNTGVLIACRRPQAKFKNTAENYVCCNHCKGFFS
FT                 KKTLRIHYKNCNPAHEKGQKSQLIKGKQLMGYIHCRANNVMRRKVFPSFQD
FT                 DDVSRSIKYDELLILFGNKLCNTYTLPHQYDMIRNYLRLLGRFKLTIKKIN
FT                 KNIIDFASIFHPQYYDDVIKAVKECANYDSELQIFRTPYNATTLGTQLKKC
FT                 ARIQAAECIKRENFDGKKAVDDFMVLFEDDYPVTINKKVIEDQTNKRRVKQ
FT                 IILPSKSDIQKLYSYIKNLCEEAMEILQKGFDFNAWKKLIEGSLILVQMFN
FT                 RRRAGEIERLSIENYENQETIDNFNPDIFDNISKEFQEQAKQFVRLTIRGK
FT                 LGRTVPVLLHTFLISYIDVLLKYRFEAGVNSKNKYIFAVPQACSPKKGYIR
FT                 ACPIMRKFANDCNASIPTSLQGTMLRKHIATYTAMLRIEENQVSDLANFMG
FT                 HNKQIHKDVYRIPNGLIDMTEVSRLLQAAIGDNDENENSNEENDQIEDNSK
FT                 DDCVQTGDILIDNDFSNNNNNNINIIDDKPQQRLSTKRIIRTRSFSDDSND
FT                 EILNSSTHNSNCKFINNLLLLLLLLFVYL"
XX
SQ   Sequence 2496 BP; 957 A; 360 C; 398 G; 781 T; 0 other;
     gctctaattc gaatttctga ttttgtaaaa agtactggtt attcgacacc catttcgaaa        60
     acatcaccat ctatcgaaag tcaaattgac aagcgtttaa ccgcaattta tcaaaattca       120
     ttaactggtt ctaattcatc cactgaaagt agtacgccta gtggtgcaac taaaattatg       180
     gaatttatcg gagatgattg gctaaaatcc tcaagtgtgg aatcgaatgt cttaaaagaa       240
     aatatttcat ctaattctga agaacaagct gtcggaaatt ttgataaaat aatcgaaaat       300
     gagcaagaat ttcgtgatca catagcagat ttaccattac aaaaaaatat tgaatctagc       360
     attattgaag aaattgtctc gaaagaaatc gatgatgcaa ggattaaaaa taaaaatgaa       420
     aataacgatt cagattatgt attaagtagt agtattagta caataaatag aacaaaatct       480
     aatgtaagtg ataatttgaa ttttcccatt aataatgatg cacttccggt tgatattcgt       540
     gagattcaca tgtctgattc aaaaaacgag gatgggggtt attcactcaa acaatatttt       600
     tgcccgtatt gtaaaaaatt acaaaaaaag tttgctcgac atttggaact aaaacataaa       660
     aatatatcag atgttcaaaa atttatacat ttttcaaaag gcaatccaga acgacgcaaa       720
     attattgaaa aaattcggaa atatgggaat tatctccata atactgatgc tgatttaaat       780
     acaggagttc ttatagcttg tcgacgtcct caagcaaagt ttaaaaatac tgccgaaaac       840
     tacgtgtgtt gcaatcactg caaaggattt ttttctaaaa aaactttaag gatacattac       900
     aaaaattgta acccagctca cgagaaaggt caaaagagtc aactcataaa aggcaaacag       960
     ttaatgggat acatacattg tcgtgctaac aatgtgatgc gtcgaaaagt tttcccatca      1020
     tttcaagatg atgatgtttc aagatcaatt aaatacgatg aacttctgat tttatttgga      1080
     aataaattat gcaacacata tacacttcct catcaatacg atatgattag aaattattta      1140
     cggcttcttg gtcgtttcaa attaacaatc aaaaaaatta acaaaaatat aattgatttt      1200
     gcatccattt ttcatcctca atattacgat gacgttataa aggctgttaa agaatgtgca      1260
     aattatgatt cagagttaca gatttttcgt acaccttata atgcaactac tttaggaaca      1320
     cagttgaaaa agtgtgctcg tatacaagct gctgaatgta ttaagcgaga aaacttcgat      1380
     ggaaaaaaag ctgtcgatga ttttatggtg ctctttgaag atgattatcc agtaacaatt      1440
     aataaaaaag ttatagagga tcagacaaat aaacgacgag taaaacaaat tattcttcca      1500
     tcgaaatcag atattcaaaa attatatagc tatataaaaa atttatgtga ggaagctatg      1560
     gaaattcttc aaaaaggatt tgattttaat gcatggaaaa aattaataga agggagtctt      1620
     attctcgttc agatgtttaa tcgacgaaga gcaggtgaaa ttgaaagact ctccattgaa      1680
     aattatgaaa atcaagaaac aattgataat tttaatcctg atatatttga taatatatca      1740
     aaagaatttc aagaacaagc caagcaattt gttcgattaa ctataagagg caagttagga      1800
     agaactgtcc ctgtattatt gcatacattt ttaatttcat atatcgatgt tttactcaaa      1860
     tatcgttttg aagctggagt aaactcaaaa aataagtaca tctttgctgt acctcaagcg      1920
     tgttctccga aaaaaggcta tattagagct tgtcctataa tgcgaaagtt tgctaatgac      1980
     tgtaatgcat cgatccctac cagtttacaa ggtactatgc tgcgaaagca tatcgctact      2040
     tacactgcta tgttgcgaat agaagaaaat caagtgtctg atttagcaaa tttcatgggt      2100
     cataataaac aaatccacaa ggatgtgtat cgaatcccta atggattaat tgatatgact      2160
     gaagtatctc gtttgctaca agctgcaata ggtgataacg atgaaaatga aaacagcaat      2220
     gaagaaaatg atcaaatcga agataattct aaggatgatt gtgtgcaaac aggagatatt      2280
     ttgattgaca atgatttttc taacaataat aataataata tcaatattat tgatgataaa      2340
     cctcaacaac gactttcgac aaaacgtatt attcgtacac gttcattcag tgatgatagt      2400
     aatgatgaaa ttttaaattc cagtactcat aattcaaact gtaagtttat aaacaattta      2460
     ttattattat tattattatt atttgtttat ttatat                                2496
//
ID   CryptonV-2_HSal repbase;    DNA;    INV; 3132 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3132
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 789-789 (2014).
XX
DR   [2] (Consensus)
XX
CC   Fragment.
CC   AEAC01013689     815 3946.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(191..257,614..1114,1646..2015,2109..2488,
FT                 2822..2889)
FT                 /product="CryptonV-2_HSal_1p"
FT                 /note="tyrosine recombinase."
FT                 /translation="TTLPFGQSVRDINMFKQTVEREKDEDNISNIISSNKS
FT                 NDSFYIPDSNFDTENTENISKVRNQTVSKTSNNTSLEMSLPLDKVPQMIQI
FT                 CVQTVERGSKKDFCIYCKTEQTKLSRHLMRKQKNEEEIKNIMCIPKGQTKR
FT                 RILISQIRKNGQFLFNTNSDINTGELKVMRRPNTKSNKNATDFCTCSQCKE
FT                 EFLSLLTEDYAPSIARTAVETQLRKRRQSTILLPTKDDIKKLEAYLNNKLK
FT                 MAYDSLKETFSANAWEALAESCLLSQLFNRRRPGEVERALIEDFYNYQKVN
FT                 QNTIGTVYVSLSKDEKKATENYRKAANVHPNNPYLFGISGILKGDYRYLRA
FT                 CDLMRKYLEECGALYPDRLRGTNLRKHIATMCTNLNLTDHEVSDLANFMGH
FT                 ADKIHKKHYRQPILSREIFQVSKLLEIVHGVDTYSDEENENNLEQDIARSL
FT                 VLSVQHQYCYISVIFV*"
XX
SQ   Sequence 3132 BP; 1165 A; 466 C; 511 G; 990 T; 0 other;
     aggatccgtt tcaccggtta tccttggcga ccaaggatcg cgcagggttc cctcgcgccg        60
     ttcggacggt tccccgaaat cgtcatacat ttcgcggtgt cggcatacga accaccctgt       120
     agaaaacgag aacatttcaa aagcttggaa ccaaaattta tctacaacat tatataatac       180
     atctttagaa actacattgc cctttggaca aagtgtacga gatataaata tgtttaaaca       240
     aactgtagag cgtgaaagta agaaagattt ttgtatttat tgcaaaaccg aaccgatcaa       300
     ctaagtctcc atcttactag aaaacataaa gatgtttatt atacagagta acaattattg       360
     ttaaatattt acccagtgca cacaaagtaa cgataacata acattaatat tacaatatcc       420
     cactcaatga tgtaactgtt atataacata cacgttatat aagttatatt gttgaatggg       480
     aaattgtaaa ttgatcgatg ttatgttacc gttactttgt gttcactgaa tattaatgtt       540
     ttattaataa gtaataagta attcatatga gggaataata taacaattaa agtatattat       600
     tttttgtgta tagaagatga agataatata agtaacatca tttcaagcaa taaatcaaat       660
     gattcttttt atattcctga ttcaaatttt gatacagaaa atacagaaaa catttcgaag       720
     gttagaaatc aaactgtatc taaaacatca aataatacat ctttagaaat gtcattaccc       780
     ttggacaaag tgccccagat gatacaaata tgtgtacaaa ctgtagaacg tggaagtaaa       840
     aaagattttt gtatttattg caaaactgaa cagactaaac taagtcgtca tcttatgagg       900
     aaacagaaaa atgaggaaga aataaaaaat attatgtgta ttccaaaggg gcaaacaaag       960
     cgtagaattt tgataagtca aattcgtaaa aatggacaat ttctttttaa cactaattca      1020
     gatattaata caggtgaatt gaaagttatg cgacgtccaa atactaaatc taataaaaat      1080
     gccactgatt tttgtacatg ctcacaatgt aaaggtaact attctaaatc agctattcgt      1140
     catcactaca aaagatgtag taaaaagaat tctgcaaata atagatctat attatacaaa      1200
     tcaagaagaa tcacttgtcg gattcatgaa tccgcgtcta aaattcttcg aaaacgtgtt      1260
     tttcctacaa tgaaagatga cgatgtttcg cgaattatta gatatgacga attggccatt      1320
     gattatggga acaaattatg tgaaaaatat cacgatccgc acttttatga tataatttga      1380
     cagaaattgc gtcaaattgg tcgtctactt ttcgagatga agaatcaaaa tgacaaaatt      1440
     gatgatcttt ttacaatctt tgtacctgat aattatgata attgtctcga agctatcaga      1500
     actttagcag gtttaaatga atcgggaact ggatttaaaa ctccgtcatt ggcaacatca      1560
     ctgggaactt tgttaaaaca actttgtaaa cgttgcatca ccataatgat taagaaacgt      1620
     gataaggtaa aataaaaatt cgcagaagaa ttcttaagtt tactaacgga agattatgca      1680
     ccatctattg ctcgaacagc tgttgaaact caacttcgaa aaagaagaca gtcaacaatt      1740
     ttactaccaa ctaaagatga cattaagaag ttagaggctt atttaaataa taagctgaag      1800
     atggcttacg attcgttgaa agaaacattt tctgcaaacg catgggaagc tctggcagaa      1860
     agttgtctgc tatctcaatt atttaaccga cgtagaccag gagaagtaga acgggcttta      1920
     atagaagatt tttacaatta tcaaaaagtg aaccaaaata caataggtac ggtttatgtt      1980
     tctctcagta aagatgagaa aaaagcgacc gagaagtatg tccgatttac tatgagagga      2040
     aaattaggcc gtaccgtacc ggtattactt cataagcaaa tgctggaaaa tttataatta      2100
     cttctaagtt atcgtaaagc tgccaatgtt catccaaaca acccatatct ttttggaata      2160
     tctggcatac taaaaggaga ttaccgttac ttaagagcat gtgatctcat gagaaaatat      2220
     ttagaggaat gcggagcatt gtatccagat agattacgag gaactaattt aagaaaacat      2280
     atagctacaa tgtgtactaa tttaaatcta acagaccacg aagtttccga tttggctaat      2340
     tttatgggtc acgctgataa aattcataaa aaacactatc gtcagcccat tttaagtaga      2400
     gaaatatttc aggtatctaa attactagaa attgtacacg gagtagatac atatagcgat      2460
     gaagaaaatg aaaataatct agaacaaggt aattctcgtc agaatatgtc attagataag      2520
     tttatttcgc ttctattttt gttttaataa cattgtccaa tactattttg caacactaga      2580
     aggaatagtt attttcaata tattttgctt gctgaacata tcgaacgaat ctattgatca      2640
     aatttgtcaa tgacattaca gttttaagaa aaataacgtc aaggcgacat gaaaatgatc      2700
     ctgggataaa atattattaa agtgaaaaat catttctcct acattttgtt aatgctaggc      2760
     aaaaatatca gcttttaact ttaaattgca tttcgtttta gtatgagttt ctgtttttaa      2820
     gatatagcta gaagtctggt cttgagtgta caacatcaat attgttatat cagtgtaatt      2880
     tttgtctaat caatgaaaat aataatttga cataaaacaa tatattttaa aattaagttt      2940
     tggtaacttt ggcattagca aaatttaaaa aagcaattga tgccagtgct acaatattat      3000
     gaaaattctc agaatcattg ttttctattt ctttgtatga ttcttgtatg atttaaattg      3060
     tatggtttaa atgtagtttc atttttctca aaattgtggc acaaccagct caggacaatg      3120
     aatttgtatc ca                                                          3132
//
ID   CryptonV-3_CFl repbase;    DNA;    INV; 2040 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-3_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2040
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 790-790 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01006912    4416 6455.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2037
FT                 /product="CryptonV-3_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="FLIAEDEDEVSRTGSISESNDSSYRPDSDTSENSNVE
FT                 DKNNSKTSMIDKNQDLQISKTSHNTTLERSLSPRHAPDDTNMFVKTVETGN
FT                 KKDFCVYCHTEQSKLSRHLSRKHSNVKEVKDILNIPRGQPERRILFNKIRK
FT                 NGHYLFNTNSDVNTGELKVMRRPNVKYNKNASDFSICPQCKGNYSKSALRH
FT                 HYRRCSKRNSTYNRTILSKSRKITGRIHESACKILRERVFPTLRDDDVTRI
FT                 IRYDELAINFANKLCEKFQDPHFYDMIRQKLRLIGRLFLEIKNQNDKIDDL
FT                 FTIFVPDNYDNCLRAVRTLAGLNELGTGFKTPSVATSLGTLLKQLCKRCIT
FT                 VMIKRCDKEKRKLAEQFLNLLVEDYSSSIARTAVETLHQKKRYSKKLLPSQ
FT                 DDIKKLETYLNDTLKTASDSLKQTFSLNTWKTLAECCLLSIQLFNRRRSGE
FT                 IERALIEDFQNYESVNENTVGTSYLSLSNEEKKAAQKYVRFTMRGKLGRTV
FT                 PVLLHRQMLEHLQLLLSHRETAKVHLKNPYLFGIPGILKGDYRYLRACELM
FT                 RKYSQECGASNPNTLRGTNLRKHIATMCTNLNLRDHEVSDLANFMGHADKV
FT                 HKEHYRQPILSREIFQVSKLLEIVHGKDNDEEAEEIDIEQNNFHQSISSRK
FT                 FICFSLFILIFKLSTYVINISYTNNYYIIY"
XX
SQ   Sequence 2040 BP; 768 A; 313 C; 337 G; 622 T; 0 other;
     tttcttattg cagaagacga agatgaagta agtcgtactg gttcaatcag tgaatcaaat        60
     gattcatctt atagacctga ttcagatact tctgaaaaca gtaatgtaga agataaaaat       120
     aattcgaaaa cttcgatgat agacaaaaat caagatttac aaatttctaa aacatcacat       180
     aatacaactc tagaaaggtc actttctcct agacatgcgc cagatgacac aaatatgttt       240
     gtaaaaactg ttgaaactgg aaataagaaa gatttttgtg tttattgcca cacggaacaa       300
     tccaaactga gtcgtcatct cagtagaaaa cacagcaatg taaaagaagt aaaggatatc       360
     ttaaatattc ctaggggaca accagagcgt agaatcttat ttaacaaaat tcgtaaaaat       420
     ggacattatc tttttaatac taattcagat gtcaatacag gtgaattaaa agttatgcga       480
     cgtcctaatg ttaaatataa taaaaatgct agtgattttt ctatatgccc tcaatgcaag       540
     ggtaactatt ccaaatcagc tcttcgacat cattatagaa gatgcagtaa acgaaattct       600
     acatacaata gaactatatt atccaaatca aggaaaatta ctggtcgaat tcatgaatct       660
     gcgtgtaaaa ttctccggga acgcgttttt ccaacattga gagatgacga tgttacaaga       720
     attataagat atgatgaatt ggctattaat tttgcaaata aactatgtga aaaatttcaa       780
     gatcctcact tttatgacat gatacgacaa aaattgcgtc tgattggtcg tctctttctt       840
     gaaataaaga atcaaaatga taaaatcgat gatctcttta caatttttgt accagacaat       900
     tatgataact gtctcagagc tgttagaact ttagcaggtt taaatgagtt aggaactggc       960
     tttaaaaccc cgtcagtagc aacatctttg ggtactttac taaaacaact ttgcaagcga      1020
     tgcattaccg taatgataaa gagatgcgat aaagaaaaac gaaaacttgc agaacaattt      1080
     ttaaatctat tagtagaaga ttattcatct tctattgctc gaacagctgt tgaaacactg      1140
     catcagaaaa aaagatactc caaaaaatta ctaccatctc aagatgatat taagaaatta      1200
     gaaacttatt taaatgatac actaaaaaca gcttccgact cattaaagca aacattttct      1260
     ttaaatactt ggaaaacgtt ggcagaatgt tgtttgctgt ctatccagtt atttaaccga      1320
     cgtagatctg gagaaatcga acgtgcttta attgaagatt ttcagaatta tgaatcagtg      1380
     aatgaaaata cagtaggtac gtcttaccta tcgcttagca atgaagaaaa gaaagcagca      1440
     caaaaatatg ttcgattcac tatgagaggg aaattaggcc gcactgtacc ggttttactt      1500
     cataggcaaa tgttagaaca tttacaatta cttctaagtc atcgtgaaac tgcaaaagtt      1560
     catctaaaaa atccatacct tttcggaata cctggcatat taaagggaga ttatcgttac      1620
     ttaagagcat gtgagcttat gagaaaatat tcacaggaat gtggagcttc aaatccaaat      1680
     acattgcgag gaactaattt aagaaagcac atagctacta tgtgcactaa tttaaattta      1740
     agagatcatg aagtttctga tttggctaat tttatgggtc atgcggataa agtacacaaa      1800
     gaacattatc ggcagcctat tttaagtaga gaaatattcc aagtgtctaa attattagag      1860
     attgtacatg gaaaagacaa tgatgaagaa gcagaggaaa ttgatataga gcaaaataat      1920
     tttcatcaaa gtatatcgtc gcgtaagttt atttgtttct ctttgtttat cttaattttt      1980
     aagttgtcaa catacgttat caacattagt tatactaata attattatat tatttataat      2040
//
ID   CryptonV-3_HSal repbase;    DNA;    INV; 2973 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-3_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2973
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 791-791 (2014).
XX
DR   [2] (Consensus)
XX
CC   Fragment.
CC   AEAC01003422    8175 11147.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(74..307,342..647,715..1014,957..1439,
FT                 1443..1718,1708..2373)
FT                 /product="CryptonV-3_HSal_1p"
FT                 /note="CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="IHFKFYEKLIYMLFCVIFYCTLYINLGIYNYYWNDNV
FT                 FEIYEDDNIYERTSTERIATVNTITEHSDDSHMSTGGILLFMLLIFSECIT
FT                 SNNSVQDNLEKDTSYILSNTSSDRSLAEPTINKESNSIVEKTNNSTNTSGG
FT                 LDVSMFINVSGKGARDDTEMFVLPLDAGKRKHFYVLQYIPMPKGSVERRKI
FT                 IQTIRRRGNFYFNVDCARNNGELLVERRSKKIYKILPSDYVVCPKCKVFIL
FT                 KCTSRHNYNRCIISKTKYTRTISILGRKVLDRIMKQAVLNDIDFRQEGTGS
FT                 NHEASSALRLRVFPILREDNIIRLVRYDELIIAYGNQQCEKYKTSDHNDNM
FT                 IRQKIRKIGRLFNLLKDKHPEVEDFASIYFPKYSSACIDAINILSRLSLCG
FT                 KFYKISSLASALGMLLKEIGKLLINRYIRREDNNKKLLTEDFLKVFTDFNT
FT                 HISKTISETMSRNKRHKKIVLPSKSDIIKLYNFLQEKRQIAYNSLKKEFSY
FT                 NTWLTLIKVTLTSVQVFNRRRAGEIQRTLIEHIENFNRTLIEDYKSYEGIN
FT                 YQTNDMYKALSIHAQQIAQKYILFTLRGKLGRSVPVLLTEELRNCIDMILR
FT                 YRKAARVSSKNPYLFGLPSIAKNKYKYLLACDLLRQYALECGAEKPETLRA
FT                 TELHKHIATICINYNLSENEISAFANFMGYSDKIHLSHYRQLVIEKEILEV
FT                 SQYLEAAQGNSEDNDSDYSDSTIFDNENTNQKTYSDEFNITTSRQLVQGMY
FT                 LLYL"
XX
SQ   Sequence 2973 BP; 1150 A; 390 C; 453 G; 980 T; 0 other;
     ggttacaaat atttttattt tactgtaata acatattatt tttatcagaa attatacata        60
     attttagtaa taaatacatt ttaaatttta tgaaaaatta atttatatgt tattttgtgt       120
     tatattttat tgcacattgt atataaattt aggaatttac aattattact ggaatgacaa       180
     tgtgtttgag atatatgaag atgataatat atatgaacgc acttctactg aaagaatagc       240
     tacagttaat acaattactg aacattctga tgatagtcat atgtccactg gaggtatatt       300
     attattttaa aactaaaatt acttcttata aatatatata aatgttattg attttttcag       360
     aatgcatcac tagtaataac agtgtgcaag acaatttaga aaaggatact tcttatatac       420
     tatcgaacac ttcatctgat agaagtttag ctgaacctac aataaataaa gaatcaaatt       480
     ctattgttga aaaaactaat aattccacaa atacatctgg cggattggat gtatccatgt       540
     ttataaatgt atcaggaaaa ggtgcccgag atgacaccga aatgtttgtt ttgcctctgg       600
     atgcgggaaa aagaaaacat ttttatgtac tgcaatacat tccaatgtaa aatagttcgt       660
     catttggaac gaatacacgg taatgaatta gaggtacaaa aatttaaaac ttgaccgaaa       720
     ggaagtgtgg agcgaaggaa aattatccaa acaatccgaa gacgtggaaa tttttatttt       780
     aatgttgatt gtgcacgaaa taacggcgaa ttgctcgtag aaaggcgttc taaaaaaata       840
     tataaaatat taccatctga ttatgttgta tgtccaaaat gcaaagtatt tatattaaag       900
     tgtacaagca gacataacta taacagatgt attatatcca aaactaaata tactagaacg       960
     atatcgattt taggcaggaa ggtactggat cgaatcatga agcaagcagt gctttaagat      1020
     tacgtgtttt tcctatttta agagaagata acattatacg acttgtacgt tatgacgaac      1080
     taattattgc ctatggaaat caacagtgtg aaaaatataa aacttcagat cataatgata      1140
     atatgataag acaaaaaata agaaaaatcg gtcgtctatt caacttatta aaagataaac      1200
     atcctgaagt tgaagatttt gcttccattt attttccaaa atatagtagt gcttgtatcg      1260
     acgctataaa catattatca agattgtctt tatgcggaaa attttataaa atctcgtcgt      1320
     tagcatctgc actcggaatg ttgttaaaag aaataggaaa attattaatc aaccgatata      1380
     tcaggaggga agataacaat aagaaattac taacagaaga ttttctaaaa gtatttactt      1440
     aagattttaa tacgcatatt tctaaaacaa tatctgagac aatgagccga aataaaagac      1500
     acaaaaaaat tgttttgcct tcaaaatctg atattattaa gctttacaac tttttacaag      1560
     agaaacgtca aatagcgtat aattctttaa aaaaagagtt ttcttataac acatggctta      1620
     cgcttataaa ggtaacatta actagtgtac aagttttcaa tcgccgtaga gctggagaaa      1680
     tacagagaac tttaattgaa catatagaga actttaattg aagattataa aagttatgaa      1740
     ggaatcaatt atcagacgaa tgacatgtat aaagcacttt caatacatgc tcagcagata      1800
     gctcagaaat atatactatt taccttaaga ggtaaacttg gtagatcagt accagtccta      1860
     ttaactgaag aattaagaaa ttgcattgat atgatcctaa ggtatagaaa agctgcgaga      1920
     gtttcttcaa aaaacccata tttatttggt cttccatcta ttgcaaaaaa taaatacaaa      1980
     tatcttttgg cttgtgattt attgcgacaa tatgcgttag aatgtggtgc agaaaaacca      2040
     gagaccttac gtgcaactga gttacataaa catatagcga caatatgtat caattataac      2100
     ttatcagaaa atgagatctc agcatttgcg aactttatgg gttacagtga caaaatacat      2160
     ttaagtcact acagacaact tgttattgag aaagaaatat tggaagtatc acaatatttg      2220
     gaagcagcac aagggaacag cgaagacaat gatagtgact attcggattc tacgatcttt      2280
     gataatgaaa acacaaacca aaagacatac agcgatgagt ttaatataac tacatctaga      2340
     caactagttc aaggtatgta tttattatat ttgtaacaaa caattttaaa aaggtattta      2400
     attatcttag taagcaaaaa gtaactggta ttattgtaag agtagcacgt aatataacat      2460
     ttgtcacatt ttatttatgt tgagtgacta taatgaaatt tttatagact ataatgattt      2520
     tagcacaatt taattatatg ttaaaccagt tacttgcttt ctcatttgca tattaagaca      2580
     aaaaacgaag aggccatcat ggatcttttc ctgaattatt ttcttgatta gctttttact      2640
     tttacaaatt cacacaagga gaaaagatcc atgactgagc ttctggatta taatttaaat      2700
     atgacagcaa taacattatt tataatttct agtctagtta ttaaattaat ttagaaatta      2760
     taaatgatga acacatgaac caaagatata tagggtattt gcctaatatt tactcctttc      2820
     gtatatgtgt aagtcaaact aaataaaaaa ttctttatca ttttgcatag gctttttagt      2880
     tattaattaa agttgatcgc aaatgattgc acgcaataat acactgttct ttaattaata      2940
     acaaaatcta tgtggttatt tacaaaataa ttg                                   2973
//
ID   CryptonV-4_CFl repbase;    DNA;    INV; 2001 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-4_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2001
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 792-792 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01027473    6931 8931.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1998
FT                 /product="CryptonV-4_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="ISIHIHISCFLDVENEESGSEYLPSEDDQNSDNNDND
FT                 ETQQIQKSIASMSSISSLDATKMNNGTSICDDEKMHVETSNAKNIKQNYCI
FT                 FCSKLQTQLVRHLEKVHRNESDVKKFAALPKRNPERRKIIDTLRKNGNFKF
FT                 NTNSELNNGQLIVCRRPNEKYKKAANNFIACAKCKGFFSKNTIRHHSRSCF
FT                 ETKFTKNKCIMVMGRKITCRLHSSASELLRKTVFPVLREDEVIRAIRYDEL
FT                 LILYGNKLCMKYKSQHHHDMIRARLRLLGRLLLAMKDINENIESFESIYNP
FT                 KVYDDCICAINKVAKYNSETKMYETPAVAANLSTLLKHIGNILIIECIKKE
FT                 NIEKKRQVKDFLKLLVVDVGTSINTTVVETQTAHKRRKKINLPTLEDIRKL
FT                 YSHLEEKRSDAYKRLYQSFSYCHWISLTETTLTSIHVFNRRRAGEIERILI
FT                 EDFNSYEKLNKNMHSDMYQSLSTENKKIAQKYVRFCIRGKLGRTVPVLLSN
FT                 DLFQSITLILKFRKQAGVSEKNPYVFGLPGNNKERYKYLRACTLLRKFAEE
FT                 CNANQSSTLRGTILRKHVATYCIQLNLNDIDISDLAMFMGHSDKIHKDHYR
FT                 QPLASRDILKISQYLEAVQGNTNNSEADSTDSNSENDKVLKENSCINNDTA
FT                 EKEDISIGNFFYISFLH"
XX
SQ   Sequence 2001 BP; 786 A; 298 C; 340 G; 577 T; 0 other;
     atatctatac atatacatat atcatgcttt ttagatgttg agaatgaaga aagtggatca        60
     gagtatttac cgtcagaaga tgatcaaaat tcagataata atgacaatga tgaaacgcaa       120
     caaatacaaa aatcaatagc aagcatgtct tcaatatcca gtttagatgc cacaaaaatg       180
     aataatggca catcaatatg tgatgacgaa aagatgcatg tagaaacttc aaatgcaaaa       240
     aatattaagc aaaattattg catattctgc tcaaagttac agacacaact agtgcgacat       300
     ttagaaaaag tacatcgcaa tgagtcagat gtaaaaaaat ttgctgcttt acctaaaaga       360
     aatcctgaac gaagaaaaat tattgatacg ctacgaaaaa atggcaattt caaatttaat       420
     acaaactccg aattaaataa tggacaactc atagtatgtc ggcgtcctaa cgaaaaatat       480
     aaaaaggccg ctaacaattt tattgcttgc gccaaatgca agggcttttt ttcaaaaaat       540
     acaattcgcc atcattctcg aagttgtttt gaaacaaaat ttacaaaaaa taaatgtatt       600
     atggtgatgg gtagaaagat cacatgtaga ttacattcat ccgcaagtga acttttaaga       660
     aaaacagttt ttccagtctt gcgggaagat gaagtgattc gtgctataag atatgatgaa       720
     ttgttgattt tatatggaaa taaattgtgt atgaagtata agtcacaaca tcaccacgat       780
     atgattcgtg ctcgattacg tcttcttggt cgtctcctct tggcgatgaa agatataaat       840
     gaaaatatcg aaagctttga atccatttat aatcccaagg tatatgatga ctgcatatgt       900
     gcaattaata aagttgcaaa atataattct gaaacaaaaa tgtatgaaac gcctgcagta       960
     gcagcaaatt tgtcaacgtt attgaaacat attggaaata tccttattat agagtgtata      1020
     aaaaaggaaa atatcgagaa aaaaagacaa gtcaaggatt ttttaaaatt acttgtcgta      1080
     gacgtcggaa caagcatcaa tacaactgtt gtagaaacac aaacggctca caaaaggcgt      1140
     aaaaaaatta atcttccaac attagaagat attcgaaaat tatacagtca tttagaagaa      1200
     aaacgatctg atgcttacaa gagactatac caatcgttct cttattgcca ctggatttct      1260
     ttgactgaga caacactaac ttctatacat gtgttcaata gacgtcgagc aggagaaatt      1320
     gaaagaattt tgatagagga cttcaacagc tatgaaaaat taaataaaaa tatgcatagt      1380
     gacatgtatc aatcgttatc tacagaaaat aagaaaattg ctcaaaaata tgtaagattt      1440
     tgcataagag gcaaattagg acgtacagtc cctgttctgt tatcaaacga tttatttcaa      1500
     agcattactt taattttgaa gtttcggaaa caagctggag tatcagaaaa aaatccttat      1560
     gtttttggat tacctggaaa taataaagaa aggtataagt atctcagagc atgcacgtta      1620
     ctacgaaaat ttgcagaaga gtgtaatgcc aatcaatctt ccactttgcg tggtacaata      1680
     ctaagaaagc acgtggctac atattgtatc caattaaatc taaacgatat cgatatttcg      1740
     gatctggcta tgtttatggg tcattccgat aaaattcaca aggatcatta taggcaacca      1800
     ttggctagta gagacatatt aaaaatatca caatacttgg aagcagtaca aggtaatacg      1860
     aataattcgg aagcggattc aacagatagc aattccgaaa atgataaggt attaaaagag      1920
     aatagctgta ttaataatga tacagcagaa aaagaagata tatctatagg taattttttc      1980
     tatatttcct ttttgcattc t                                                2001
//
ID   CryptonV-4_HSal repbase;    DNA;    INV; 3401 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-4_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3401
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 793-793 (2014).
XX
DR   [2] (Consensus)
XX
CC   Fragment.
CC   AEAC01011153 3507 107.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(426..588,680..1034,1476..1844,2369..2816)
FT                 /product="CryptonV-4_HSal_1p"
FT                 /note="tyrosine recombinase."
FT                 /translation="TNSDKENNEDSEYLPSEDEKSSSNNDPPLQKHNSNIN
FT                 ITTSSISSVDVSQIIPALRHLETVHKDEPEVKKLSVLPKKSPERKKIIDIR
FT                 KNGNFKYNINAEVNEGHLIICRRPKENSRKTAKDFIVCIKCKGFFSKNSTR
FT                 HHVRECLKKDFKKHKGIMCCNRVLIIPPYAAVSYKRHIKKYGFPCIARDEV
FT                 TRAIRYDEIIILYANKLCIKYKAQHQHEMIRARLRLLGRFLLALRKINNNI
FT                 SDFKSFYHPKIYEDCVSAINNVAGYNADEKIYRAPAVVANLSTLIKHVGNL
FT                 LITNFEKKREYQKNPYLFGLPSNEKRRYKYLRTYALIRKFATECNAVNSNT
FT                 LRGTILRKHVSTYCIQLNLNEIDVSDLATFMGHADKIHKEHYRQPLPTRDI
FT                 LKISQYLEAVQGTKNDGDIFSSSEYEKDESETKYIDKDDTVEASDLSLSA*
FT                 "
XX
SQ   Sequence 3401 BP; 1288 A; 511 C; 552 G; 1050 T; 0 other;
     tatatatgtt tctttacaaa actcacatcg tgatttcttc tatgtcttta gtaaaaaata        60
     caatgtttcc aatggaaatg tattaagata ctatattata ctttacatat atgcttcctg       120
     cattatggaa caagttacta tattttccct gtaaaacata aatagtatat ataattaaaa       180
     atataaatta tatcacaaaa tattccttgg ttataaaaaa tctttattaa tgtttactat       240
     aaatttcgct ccatgtagga taaattgtaa acaaaataat atattttcaa agcattactg       300
     tgagtgtcaa aatattagtt atacctatta ttttacaact tagtgttctc attgttgtaa       360
     caaaaacatt ttgttcaatg atgaaaatat ttctataatt taatttgatt tatttcatga       420
     cagatactaa tagtgataaa gaaaacaatg aggattctga atatttacct tcagaagatg       480
     agaagagttc atctaataat gatcctcctc tgcagaaaca caattcgaat ataaatatta       540
     ctacatcctc aatttcaagt gttgatgtgt cgcaaattat tcctgcatgt aatgacgaaa       600
     atatggatgt tgataagtcg aacgttaagt ataaacgaaa ctactgtact tttttgtatg       660
     aaattgcaat cataattagt gcgtcattta gaaaccgtac ataaagatga gccagaagta       720
     aaaaaattgt ctgttttgcc taaaaaaagt ccggaacgaa aaaaaataat agatataaga       780
     aaaaatggta actttaaata taatataaac gcagaagtaa acgaaggaca tcttattata       840
     tgcagacgtc ctaaagaaaa ctcgagaaag acagctaaag attttattgt ttgcataaaa       900
     tgtaaaggat ttttttcgaa aaactcgaca cgtcatcatg ttcgagaatg tcttaagaaa       960
     gattttaaaa agcataaagg aatcatgtgt tgtaaccgcg tccttattat tccaccttac      1020
     gctgcagtta gttagtaagc acgccttaca caattcggtt agagtgctga catcataaag      1080
     tacgtgtaat acatgaactt gcaactctgc tgactgagat cacgaaagta ggttattgtg      1140
     tcagtcatac caaaggcatc aagatatata agactggagc cgaaaaataa gagcagatag      1200
     aagattgaac cgagaactga gcgtctcgtt aattacgtat aaatccggtt ccttcattcc      1260
     acgctagtac gtaagctcaa gtatatggat gaaaaaatca ccaccttctt ttgtacgacc      1320
     gactacttct atctcgcctg gaccagcgaa acccgggatc ccaatcccta agaccacgaa      1380
     cgaacccgaa acctaaccgg ccttggtgca tcaggcgcga aggccatgac acatggttat      1440
     gggaagaaaa gttatatgta ggatatatca atcagcaaac gacatattaa aaaatatggt      1500
     tttccctgta ttgcgagaga cgaagtaacg agagccataa gatatgatga aataattatc      1560
     ttatatgcaa ataagctatg tattaaatac aaggctcaac atcaacacga aatgatacgt      1620
     gcaagattgc gacttcttgg ccgtttctta ttggcgctaa ggaaaatcaa taataacatc      1680
     agtgacttta aatcttttta tcatcccaaa atctacgaag attgtgtttc cgcaataaat      1740
     aatgtcgcag gatataatgc tgatgagaaa atatatagag ctccagcagt agttgctaat      1800
     ttatcaactc ttataaaaca tgtaggaaac cttctaatca caaagtacat aaaacaagag      1860
     aacacagaaa aaagaagtta gttaaagatt ttttaaaatt attaactgtt gatataacaa      1920
     cgagtgtaaa cacaactgtt gtagaaacgc aatcagctca taggagacgc aaaaagacag      1980
     atctcccaac attgagtgac attaagactt tatacaaata tacatttgaa ttatacattt      2040
     gaagcaaaag agaatcgaag cttatactcc actaaaacat tctttttcgt ataacaattg      2100
     gcttacatta tcagaaacaa cattaattgc agcacatgta ttcaatagac gacgagcagg      2160
     cgaaattgaa cgaacgctca ttgaagattt ccaaaattat gaaaaattga ataagaatat      2220
     gtacagtgat atctacaagt cattgtcaat acaaaataaa aaaatagcag aaaaatatat      2280
     tcgattttgc attcgaggaa agttggggcg tacagtacca gttttattat cacataatct      2340
     tttcgaaagt attattttga tattaaagtt tcgaaaagaa gcgggagtac caaaaaaacc      2400
     cgtacttgtt tggattacct agtaatgaga aacgcagata caagtatctt agaacttatg      2460
     ctttaatacg aaaatttgca acagaatgta atgcagttaa ttccaatact ttgcgtggaa      2520
     cgatattacg aaaacatgtg tctacttatt gtattcaatt gaatctgaat gaaattgatg      2580
     tgtctgatct tgccacattt atgggacatg cagataagat tcataaggaa cattataggc      2640
     aaccattgcc taccagagac atattaaaaa tttctcaata tttagaagca gtccaaggaa      2700
     ctaaaaatga tggcgatata ttttcatcga gcgaatatga aaaagacgaa tcagaaacga      2760
     agtatattga taaagatgat acggtagagg cgagcgattt atctttaagt gcataatcag      2820
     aaattacaat ttattttgaa aaagtaatat tccagcagaa agatagaaaa gaaaaagtat      2880
     agatattcat attgtgcttt ttctttcttt atttttctgt gattgtgatt attttccttt      2940
     attttgcgtt tctaaatata tagtaatata caatcgatgt tggaaagatt atctgggtta      3000
     tcttttatga caagtttatg aattctccgt cttgttaaat ggaaaagttt gttttctcat      3060
     tgtagaatac tgccattgaa caagatgaaa gagttgaaaa caaactcatc ttaaaaatta      3120
     cagacgacct ttaagtccgc gattgtaaat gataaaatgc agaacattta aatatttaat      3180
     caaatctctc agcgaaaata tatagcgaaa gtagtttata atttcaacaa aagatcgagt      3240
     gagattgtaa aagtctgcat tatattttgc attttatgtt tggaaatata gaataacgaa      3300
     aaattatctt ataaatatat taggtgcgca actaagttct cgctgttttt ttgatgaaaa      3360
     tgcaacttta ttgtaaaaaa atggttacaa atgaatcatt c                          3401
//
ID   CryptonV-5_CFl repbase;    DNA;    INV; 2255 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-5_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2255
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 794-794 (2014).
XX
DR   [2] (Consensus)
XX
CC   Three copies are 100% identical. Likely fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1986
FT                 /product="CryptonV-5_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="YIIYYITRVLIYRKIMIVKLVSILLYFIHFLYNFNID
FT                 SVLLGLEYLDSTKYKENSDSEYVYCPSEHSSILEESDASKDKFPEINEKKL
FT                 SSGSMKVSNNISGFEVSQINESNILCPDDTNLNIDPSEGPKGGNKKNCCFY
FT                 CHKMQSKIARHLATVHRNESEVKKFLDLHPNNLERKKIIETIRRNGNFVYN
FT                 TNNNVNDGKLIVVRRPQKNKQKDAKDYTACAKCKGFFVKSSIRRHFQQCAG
FT                 YSSKQTRSVLVIGRAIIGRINPIAEETLRKVVFPALREDEITCMIRYDELI
FT                 IMFGNRLCRKYRKQYQYKLIRSHLRYLGRFLKVMRNLNVQVTDMQSIYHPT
FT                 FYEDCIRVVNRMSAFDDNTSTYKVTTTPQLMGTLLKKVGNLLITQSIKKKD
FT                 YETKKDTEEFLALLIDDFPTSVNKAALEAQEENRRCKKTELPLMDDIINLR
FT                 NYLDGKRKALCVMLKETFCYNSWLELAKVTLTSVQLFNRRRAGEIEHLLIK
FT                 DFENYVQISENTDEDLFRSLSGAAQEIAKKYVRFTIRGKLMRTVPVLLSAE
FT                 LLKCIELILKYRSKAHVPAANPYLFGIPGYNKSCFKYLNACELMRQFSTAC
FT                 GAKRPWTLRGTGLRKHVATISVALDLSENDVSDLAKHMGHAIAIHKEIYRQ
FT                 PVVSRNILRISRK"
XX
SQ   Sequence 2255 BP; 863 A; 319 C; 396 G; 674 T; 3 other;
     tacataatat attatattac tagagtacta atttacagga aaattatgat agtaaagtta        60
     gtatcaatat tactctattt cattcatttt ttgtataatt ttaatataga ttctgttttg       120
     ctaggcttgg aatatttaga ttctacgaaa tataaagaaa attcggattc agaatatgta       180
     tattgtcctt ctgaacatag ttccatcttg gaagaatcag atgctagcaa agataaattt       240
     cctgaaatca atgaaaagaa actatcaagt ggatcaatga aagtttcaaa taatatttcg       300
     ggctttgaag tatcacagat taatgagagc aacatattat gtcctgatga cactaatctt       360
     aatatcgatc catctgaagg acctaaaggt ggtaataaaa aaaactgctg tttctattgc       420
     cacaaaatgc aatcgaaaat tgctcgacat ttggctacag ttcaccgcaa tgaatctgag       480
     gttaagaagt ttcttgatct tcatccgaat aatttggaaa gaaaaaaaat aattgagaca       540
     ataagaagaa atggcaattt tgtttataat actaataata atgtaaatga cggaaaactt       600
     attgtggtca ggcgccctca aaaaaataag caaaaagacg caaaagatta tacagcttgt       660
     gcaaaatgca agggcttttt tgtgaaaagt agcattagac gccattttca acaatgcgca       720
     ggctatagta gtaaacaaac taggtctgtg ttagttatag gcagagcgat tattggacgt       780
     attaatccta ttgcagaaga aacactgcga aaagtagttt ttcctgcact tagagaagat       840
     gaaataacat gtatgattcg atatgatgaa ttgattatta tgtttggtaa tagattatgt       900
     cgtaaatatc gcaaacaata tcagtataag ttaatacgct cacatcttag atatctcggt       960
     cgtttcttaa aagtgatgag aaacctaaat gttcaagtta cagatatgca atcaatttat      1020
     catcctacat tttacgaaga ttgcattaga gtagttaaca gaatgtctgc atttgatgat      1080
     aacacaagta cttataaagt gacaacgaca ccgcaactga tgggaacttt acttaaaaaa      1140
     gtaggaaatc ttttgattac tcaaagtata aagaagaaag attatgaaac aaagaaagac      1200
     actgaggaat tccttgctct tctcatagat gatttcccaa cgagtgttaa taaagccgct      1260
     ttagaagccc aagaagaaaa tagaagatgt aaaaagacgg aacttccttt aatggatgat      1320
     attataaacc ttcgtaatta tcttgatgga aaacgtaaag ccttgtgtgt aatgttaaaa      1380
     gaaacatttt gttataatag ttggttagaa ttagcaaaag taactcttac gtctgtacaa      1440
     ttatttaatc gtcgtagagc gggcgaaata gaacaccttc tcatcaaaga ttttgagaat      1500
     tatgtacaaa tttcagagaa cacagacgaa gacttattcc gatctctatc aggtgcagca      1560
     caagaaattg caaaaaaata tgtaagattt actatacgcg gaaaattaat gcgtactgtt      1620
     cctgtattat tatcagctga attattaaaa tgtattgaat tgattttaaa atatcgaagc      1680
     aaagctcatg tacctgctgc aaatccgtat ttatttggaa ttccgggata caataaaagt      1740
     tgtttcaaat atttaaatgc ttgcgaattg atgcgacaat tttccacagc atgtggtgca      1800
     aaacgaccat ggactctacg tggaacgggt ctcaggaaac atgttgctac gataagtgta      1860
     gcattagatt tatcagaaaa tgatgtctct gatctagcaa aacatatggg tcatgccata      1920
     gcaatacata aagaaatcta taggcaaccc gttgtaagta gaaatatttt acgaataagt      1980
     cgcaagtatt agaaaaagca caaggtatca atggcgacaa aagtgatgaa acagatagta      2040
     actatgaaaa tggagacatt tcagtagaga atgatataag tttatcttat aaaactgaag      2100
     tggaatcata tagtaccctc aatgatagta acaaatcaat acaagagtag caagttaata      2160
     aaaaatatta atagaagtgc gaagaaacgg aatagtacgt aaatattcca tatatacatm      2220
     catwtwttat agaatataat caaaattaaa tactc                                 2255
//
ID   CryptonV-6_CFl repbase;    DNA;    INV; 3413 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-6_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3413
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 795-795 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1569,1469..2473)
FT                 /product="CryptonV-6_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="SSVPSGVTDILNAIGDDWMTFSIENKHDDNDSHLNNN
FT                 NYNNHDNQESSNKCKDSSELVKDSNYSLTQININNTNILNVFEDDGMTSSI
FT                 ENEYNNNDLNNNNDNNYDNQESSNICNPSDELAKDPNYSLNSDELIEKRDY
FT                 SLNQNSTNSTNNTNGTSQSHSNEDSSKNSSLHNIPPLDIRNVQIPYSKDSS
FT                 PERRTIKKYFCPYCKKLQTKFARHLELKHKTETDVQKFIHIKKGTHERAKI
FT                 IAAIRNHGSLLHNTHHELNTGVLITVRQRQAKYKKTADDYICCTNCKGFYS
FT                 KLTIRLHYSKCKTIHKKGVREIIVMGKRLTGYIHIAANEILRKIIFPVLRD
FT                 DAVTRCIKYDELLIIFGNKLCERYTNNHQHDMIRAHLRLLGRYKLAIQSIN
FT                 KEIDDFQLIFQPQHFNTAVNALRIVAKWDTTIMWFKTPAVANALTTLLKKC
FT                 AATLQAECIKKQDYKKKQAIDDFLILWHEEVPTLINKKAIEDQIKYKRQKQ
FT                 IILPSKQDIKLLYNYYTITIQLLGKTMNIRDKNKLFFHQNKTLNYYTITIQ
FT                 LLYNYLEKQCKASLHILEKNFDLSAWKTLTKCTLILVQIFNRRRAGEIERL
FT                 TIADYKNQEILDKNVNPDLYEKLSGESRQYAKKFARITIRGKLGRTVPVLL
FT                 NIIIIKSIDTILKYRKKAGIKSNNEYIFSVPNANKLKKKYLRACPLIRKFS
FT                 HECGATIPSSLRGTTLRKQIATYTAMLNIEDAQVDNLANFMGHAKEIHKSI
FT                 YRMPIPIKEMTDVSRLLEAAMGTDLDDNDNEDCDNVSDTDSVSQISNNSEE
FT                 IAQTNNYIPDFDNDNFDDNTIQHSSDNHTTNNSHSKHHNSESFAFPYTIFI
FT                 YIIYI"
XX
SQ   Sequence 3413 BP; 1289 A; 510 C; 420 G; 1183 T; 11 other;
     agctcagtac ctagtggtgt tacagatatt ttaaatgcta ttggtgatga ttggatgaca        60
     ttttcaattg agaataaaca tgatgataat gattctcatc ttaataacaa caattataat       120
     aatcatgaca atcaagaaag tagtaataaa tgtaaggaca gctctgagtt agtgaaagac       180
     tcaaattatt ctctaactca aattaatatc aataatacaa acattttaaa tgttttcgag       240
     gatgatggga tgacatcttc aattgaaaat gaatataata acaatgatct taataataat       300
     aatgataata attatgacaa tcaagaaagt agtaatatat gtaatcctag tgacgaatta       360
     gcaaaagatc caaattattc tttaaacagc gacgaattaa tagaaaaacg agattactct       420
     ctaaatcaaa atagtaccaa tagtactaat aataccaatg gaacttcaca atctcattca       480
     aatgaagatt catcaaaaaa ttcctctctc cataatatac cacctcttga tattcgtaat       540
     gtacaaattc catattcaaa agactcttct ccggaaagaa gaacaattaa aaaatatttt       600
     tgtccatatt gcaaaaagtt acagacaaaa tttgctcgac atcttgaatt aaaacataaa       660
     acagaaactg atgttcagaa gtttatacat attaaaaaag gaacccatga acgagcaaaa       720
     attatagcag ctatccgtaa tcatggtagt ttattacata atacacatca tgaactaaat       780
     acaggtgtac ttataacagt tagacagcgt caggctaaat ataaaaaaac tgcagacgat       840
     tatatttgtt gcacgaattg taaaggtttt tattcaaaac ttacaatacg tcttcactat       900
     agtaaatgta aaacaataca taagaaaggt gtgcgtgaaa ttattgttat gggtaaacga       960
     ttgacaggat atattcatat cgccgctaat gaaattcttc gtaaaattat attccctgtt      1020
     ttaagagatg acgcagttac aagatgtatt aaatatgatg aattattaat aatatttggc      1080
     aataaacttt gtgaaagata tacaaataat catcaacatg atatgataag agcgcactta      1140
     agattgttgg gacgttataa gctcgctatt caaagtatta ataaagaaat tgatgatttt      1200
     caattgattt ttcaacctca acattttaat acagctgtca acgcacttag aattgttgct      1260
     aaatgggata caactataat gtggtttaaa acacctgcgg ttgctaatgc actcactact      1320
     ttattaaaaa aatgtgctgc tacactacaa gctgagtgta taaaaaaaca agattataaa      1380
     aaaaaacagg ctattgatga ttttcttatt ttatggcatg aagaagttcc aactttaata      1440
     aataaaaaag ctattgaaga tcaaataaaa tataagagac aaaaacaaat tattcttcca      1500
     tcaaaacaag acattaaatt actatacaat tactatacaa ttactataca attacttgga      1560
     aaaacaatgt aaagcttctc tccatatttt agaaaagaat tttgatttat cagcgtggaa      1620
     aaccttaact aaatgtacgt taatattagt tcaaatattt aatcgcagaa gagcaggcga      1680
     aatcgaaaga cttacaatag cagattataa aaatcaagag attttagaca aaaatgtaaa      1740
     tccagatctg tacgaaaaat tatctggaga atctcgacag tatgctaaaa aatttgcacg      1800
     aataactatt cgcggcaagt taggtagaac tgtacctgtt ttacttaata taattataat      1860
     aaaatctata gatacaattc ttaaatatcg aaaaaaagct ggaataaagt ctaataatga      1920
     atacatcttt agcgtcccaa atgcaaataa attaaaaaag aaatatttaa gagcctgtcc      1980
     tcttataaga aaattttctc acgaatgtgg tgcaaccatt ccatcttctt tacgcggaac      2040
     tactcttcga aaacaaattg ctacatatac tgcaatgttg aatattgaag atgcccaagt      2100
     tgataatctc gctaatttta tgggacatgc taaagaaata cacaaaagta tttatcgaat      2160
     gccgattcct ataaaagaaa tgacagatgt atctcggtta ttggaagctg caatgggaac      2220
     tgatttagat gacaatgata atgaagattg tgacaatgtc tctgatactg acagtgtatc      2280
     gcaaataagc aacaactccg aagagatcgc gcaaacaaat aattatattc cagatttcga      2340
     taatgataat tttgatgaca acactataca gcattcttct gataatcaca ctacaaataa      2400
     ttcacattct aaacatcata atagtgagtc ttttgctttt ccttatacaa ttttcattta      2460
     tattatatat atttaggttt tatstgttat atatttcata ttaatttttc taatcttatt      2520
     ttttatttat aacaaattaa atatcgattc atatcttcat tttatttaga ttttcagttt      2580
     gagaacacaa aatataatga asaaaaagaa aamwaagtcc taaacgtcgc agtagtaagt      2640
     tttattatat gcatttatat aatagawttt tatttcattt ttgtawtttt twaaaatata      2700
     tttcttactt taagttttta ttatattaat tttttaattt aatttaattt agcttctcca      2760
     tatggaaaaa caaaacgtat taggtggaag aagaaaagca aacaatttct gaacattttg      2820
     gcaacatttt tgaattacsa maattgccat ctcttcaaga atgccaaaat gtaattaata      2880
     aatataaaat tttaagaagg agacaaccac aacaagtgaa aacatggatt gataatcaac      2940
     gaagagctga aaatcgtcat aaagcatatc aaatttcaaa aagatcgaaa taatcttata      3000
     tttgcgtcct gttatttatt atatttcgtt attaatatca ttttttcatt atttttatac      3060
     attttttctt ttattttttt ctaatctttt aaaactttta tctctcatcc tcttttccct      3120
     ctcccctctc tctctctctc tctctctccc ccccccctct ctctctcgct atttctctat      3180
     tatttctatt ttatgttgct tattcttctt aaaattttct tttgtatttc cttttctgtt      3240
     tattttttct tttacatttt tatgaaattt tctttccctt tatttttatt ttccactttt      3300
     acacttttgc atatttattt attttattta tctactcaaa attatatcta ttccaacatc      3360
     cgattaattc attataaaat gtactcaaat tatattaatt ttaaggmawc ttc             3413
//
ID   CryptonV-7_CFl repbase;    DNA;    INV; 1578 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-7_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1578
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 796-796 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01001031    2883 4460.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1575
FT                 /product="CryptonV-7_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers."
FT                 /translation="IETDIENDSDYVEREYSLTASDSEDTEKSEHGNDIKN
FT                 NFSNAQNDSTISTGMDVSNSKECETRQDEQTVIPTKLIGIKKYMCVFYNKL
FT                 QTKIARHFELVHSNEPDVQKFKYLPKGCRERRNIIDILRKKGNFIFNIEKQ
FT                 YEGQGFIPCRRARENHPKILKNYLACGNCKGHYLKSTIRHHFKKCTGRTGK
FT                 NSRIVKVMGRKLEGKCLKDADERVRRLVLPAMRNDDVTRNIRYDSLLILYA
FT                 NSQSKKYRHSSHHLQMIRARLRLVSRLLITMRNINNDITSLTSIYDPKYYD
FT                 TFLDAINIVAQYNKEKDTYEKPAIASNLGTYVKYIGELLITRCIKEHDDNT
FT                 KTNVKNFLKLLTVDYGASVNKTVVESQTQFKRQKITKLPTMEDIKKLRNHL
FT                 LKIQKKSYNNLKNKFLLSDWISLGEATLTSIQLFNRRRPGETERILISDFK
FT                 SYDRINENINTFSGLSKEKIEQAQKYVRFCIRGKLGRTVPIILDELNLECA
FT                 QMFLQLRNKAKVHVKNPYLFQNMTKLLIN"
XX
SQ   Sequence 1578 BP; 639 A; 220 C; 265 G; 454 T; 0 other;
     atagagacag atattgaaaa tgattctgat tatgtagaaa gggaatattc attaactgcg        60
     agtgattctg aagacacaga gaaatcagaa catggaaatg acatcaaaaa caacttttct       120
     aacgcacaaa atgattcaac aatatctaca ggcatggatg ttagtaattc taaggaatgt       180
     gaaactcggc aagatgagca aacagtaata cctacaaaac ttattggcat aaaaaaatat       240
     atgtgtgtgt tttataacaa attgcaaaca aaaattgctc gacatttcga attagttcat       300
     tctaacgaac ctgatgttca aaagttcaaa tatttaccta aaggttgtag agaaagaaga       360
     aatatcatcg atattttaag aaaaaaagga aatttcatat ttaatattga aaaacaatat       420
     gaaggacaag gttttattcc ttgcagacgg gcaagagaaa atcatcctaa aattcttaaa       480
     aattatctgg catgtgggaa ttgcaagggc cattatttaa aatcgacaat acgacatcat       540
     tttaaaaaat gtacaggtcg gacaggaaag aatagtcgca tcgttaaagt aatgggccgg       600
     aaattagaag gcaaatgtct caaagatgct gatgagagag tacggcgatt agtattacca       660
     gcaatgagaa atgatgacgt aacacgcaat attcgttacg atagtttgtt gatattatat       720
     gcaaattccc agagcaaaaa atataggcat tcatcgcatc atttacaaat gattcgagct       780
     cgattacggc tcgtaagtcg gctattgata acgatgagaa atattaacaa tgatataacg       840
     tctttaactt ctatttatga tccaaaatat tatgatactt ttttagatgc cataaatatt       900
     gttgcacaat ataacaaaga aaaagatact tatgaaaagc ctgccattgc gtctaatctt       960
     ggtacatacg taaagtatat tggtgaactt ttaataacca gatgcataaa ggaacatgac      1020
     gataacacga aaacaaatgt gaaaaatttt ttaaaactgt taactgttga ttatggagca      1080
     agcgttaaca aaactgtagt tgaatctcaa actcaattta aaagacaaaa aattactaaa      1140
     cttcctacaa tggaggatat aaaaaaattg cggaatcatt tattaaaaat tcaaaagaaa      1200
     tcatacaata atttaaaaaa caagttttta ttatctgatt ggatttctct tggtgaagct      1260
     actttaacat caatacaatt atttaaccgt cgtcggccag gagaaactga acggatatta      1320
     atttctgatt tcaaaagcta cgatagaatt aatgaaaata ttaatacatt cagtggctta      1380
     tctaaggaaa aaatagaaca ggcacaaaaa tatgtacgat tttgtatacg cggaaagtta      1440
     ggaagaactg ttcctataat attagatgaa cttaatttag aatgtgcaca aatgttttta      1500
     caattaagaa ataaagccaa agtgcacgtg aaaaatcctt acttattcca gaacatgaca      1560
     aagttattga taaacatt                                                    1578
//
ID   CryptonV-8_CFl repbase;    DNA;    INV; 1458 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-8_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1458
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 797-797 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01018362     1833 376.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1455
FT                 /product="CryptonV-8_CFl_1p"
FT                 /note="tyrosine recombinase."
FT                 /translation="IWSVYQMPWIFFQKHFTKPKHLTNHTRKCINLKHSKN
FT                 RTITVLRRSILGRINGIASQNLKKVIFPVLREDSITRLIRYDELIIRYGNK
FT                 LCMKYKPQHQHDMVRNRLRTFGRFLKALKNINNEITDFASLYQPKYYDDCI
FT                 KAVYEIARYNPDTQKFGAASTAFQLGTLLKEVGELWRSQCIKSHDSIKKIL
FT                 VEDFLSLRKEDFGHSVNKTVMETRAHITRQKVEIAPSINDIKKLYDYVNTK
FT                 RREAYNLLKEKFSYNIWQTLGESTLISIQIYNRKRAGEIQRILLEDFYTYE
FT                 GLNEQSDPDLFKSLSDSAKEIAHKYVRFQIREKLGRPVPVLLQSDILDCIK
FT                 LFIQYRNQANVHPKNPYVFGIAGFNKQRFKVLRACDQMRKFAYECGADHPE
FT                 RLRGTLLRKHIATNCHKLKLTEHEVSELANFMGHKENIHKEYYRLPQKEAD
FT                 MKIYIKNIIDYIIDYLKKKLILSISVNIWKLHLVQIIVIL"
XX
SQ   Sequence 1458 BP; 575 A; 213 C; 233 G; 437 T; 0 other;
     atatggagtg tgtatcaaat gccatggatt tttttccaaa aacactttac gaagccaaaa        60
     caccttacga atcatactcg aaaatgtata aatttaaaac attcaaaaaa tcgaacaatt       120
     acagttctca gacggtcaat tcttggaagg attaacggaa tagcttctca aaatctaaaa       180
     aaagtgattt ttccagtatt acgagaagat tctattacac gtctcataag atatgatgag       240
     ttaattattc gatatggtaa taaactttgt atgaaatata agcctcagca tcaacacgac       300
     atggtgcgaa atcgattgcg aacatttgga cggtttctaa aggcattaaa aaatataaat       360
     aatgaaatta cggattttgc ctcattatat cagccaaaat attacgatga ctgcattaaa       420
     gcagtatatg aaatagctcg atataatcca gatactcaga agtttggtgc cgcttctaca       480
     gcatttcaat taggtacatt attaaaagaa gtcggcgaat tatggcgatc acaatgtatt       540
     aaaagtcatg attctattaa aaagattcta gttgaagatt ttctttcact tcgtaaagaa       600
     gattttggcc attcagttaa taaaacagta atggaaacaa gagcacatat tacacgacaa       660
     aaagtggaaa tagctccaag cattaacgat ataaaaaagc tttatgatta cgtaaatact       720
     aagagacgtg aagcatataa ccttttaaaa gaaaaatttt cttataatat atggcaaact       780
     ctgggtgaat ctacattaat ttctatacaa atatataaca gaaaacgtgc aggtgaaata       840
     caaagaatat tattggaaga tttttatact tatgaaggtt taaatgaaca aagcgatccg       900
     gatcttttta aatccctttc agactcagcc aaagaaattg cacataaata tgtgcgattt       960
     caaattagag aaaagttagg tcgtcctgtt cccgttttat tacaatctga tattttagat      1020
     tgtataaaat tatttataca ataccgaaat caagctaatg tacatccaaa aaatccatat      1080
     gttttcggta tagcaggttt caataagcaa agatttaaag ttttaagagc gtgtgatcaa      1140
     atgcggaaat ttgcttatga atgtggagct gatcatcctg aaagactgcg aggtactctt      1200
     ctaagaaaac atatcgcaac taattgtcac aaattaaaat taacagaaca tgaagtatct      1260
     gaattggcga attttatggg acacaaagaa aatatacata aagaatatta tagattacct      1320
     caaaaagaag cggacatgaa aatatacata aagaatatta tagattatat tatagattac      1380
     ctcaaaaaga agctgatact ctcaatatca gtaaatattt ggaagctgca cttggtacaa      1440
     ataatagtaa ttctgata                                                    1458
//
ID   CryptonV-9_CFl repbase;    DNA;    INV; 1966 BP.
XX
AC   .
XX
DT   12-JUN-2013 (Rel. 19.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Putative CryptonV DNA transposon from ant.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   CryptonV-9_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1966
RA   Kojima K.K. and Jurka J.;
RT   "CryptonV DNA transposons from animals.";
RL   Repbase Reports 14(4), 798-798 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only protein coding region.
CC   AEAB01005660    11839 9874.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1329,1319..1963)
FT                 /product="CryptonV-9_CFl_1p"
FT                 /note="CCHH and CCHC zinc fingers, and tyrosine
FT                 recombinase."
FT                 /translation="LIYIYILDVNDDNSSESEYLPSEDELRSLEHNEQTQQ
FT                 KKKLEILNTTVSSASSVDVSSGIFACNDKNMYVEKSNTKSKQNYCCFCLKL
FT                 QTQLSRHLETVHRNEPEVKKFAMLPKGNTERKKIIDIIRRNGNFKFNINSE
FT                 VNNGKLIVCRRPNEKHNKSATDFIACGKCKGFFAKQTIRHHSRKCFKKDFS
FT                 KNKCIMVMGRKVTRRIHHMANETLAKTVFPVMREDEITRIIRYDELLILYA
FT                 NKLCIKYKAQHQHDMIRARLRVLGRFLLALKKINSNIEDFKSLYHPKVYDD
FT                 CITAINVVAGYDNKENMYKTPAVAANISTLLKHIGNLLITEYIKADDSEKK
FT                 KLVKDFLKLLIVHIGTSVNKTVIETQSAHKRRKKINLPSMQDIQKLYKHLK
FT                 KVRENNYIALEKSFSYKNWISLAEATLTSIHVFNRRRAGEIERILININLI
FT                 LIEDFKNNERINKNMYSDIYTSLSEENRKIAENYSRFCIRGKLGRTVPVLL
FT                 TNELLKCIHIILKFRKEAKVSEKNPYLFGLRGSNKNRYRYLRACILMRKFS
FT                 SECNAIESSSLRGTILRKHVATHCIQLNLNDIDVSDLATFMGHAEKIHREH
FT                 YRQPLASRDILKISQYLEAVQGNEQDLNESSSDSEYEDGEDENNNDIIMDK
FT                 ENVSLSNYI"
XX
SQ   Sequence 1966 BP; 810 A; 283 C; 332 G; 541 T; 0 other;
     ttaatttaca tttatatctt agatgttaac gatgataata gcagtgaatc ggaatatttg        60
     ccatctgaag atgaactacg ttcattggaa cataacgaac agacacagca gaaaaaaaaa       120
     ttagaaatat taaatacaac tgtgtcctca gcatcaagtg tagatgtttc gtctggtata       180
     tttgcatgca acgacaaaaa tatgtacgta gagaaatcta atacaaaaag taaacaaaac       240
     tattgttgtt tttgcttgaa attacaaaca caactttcac gtcacttgga aactgtacac       300
     cgcaatgaac ctgaggttaa aaagttcgcc atgttaccta aaggcaacac agaaagaaaa       360
     aaaataatag atatcattcg aagaaatggc aatttcaaat ttaacataaa ctcagaagtt       420
     aataatggaa aacttattgt atgcagacgt cctaatgaaa aacataataa atctgctaca       480
     gactttatag catgtggaaa atgtaaaggt ttttttgcaa aacaaacaat aaggcatcat       540
     tctcgaaaat gctttaaaaa agatttcagc aaaaataaat gcatcatggt tatgggcaga       600
     aaagtgactc gcagaataca ccatatggca aatgaaacat tagcgaaaac agtattccca       660
     gtaatgaggg aagatgaaat aacaaggatt atacgctatg atgaattatt aatattgtat       720
     gcaaataaac tatgcattaa atataaagca caacatcaac acgatatgat acgtgcaaga       780
     ttgcgcgttc ttggacgatt ccttttagca ttaaaaaaaa ttaattcaaa tattgaagat       840
     tttaagtcac tctatcatcc aaaagtgtac gatgattgca ttactgcaat aaatgtagta       900
     gcaggatacg ataataaaga aaatatgtat aaaactccag cggtagcggc taatatatca       960
     acattgctga agcatatagg aaatctactt attacagaat atataaaggc agatgattct      1020
     gaaaaaaaga aattagtgaa agatttttta aaattattga tcgtacatat tggaacgagt      1080
     gttaataaaa ctgtaatcga aacgcagtca gctcataaaa gacgtaaaaa gatcaatcta      1140
     ccatcaatgc aagatattca aaaattgtat aaacatttga aaaaagtacg agaaaataat      1200
     tacattgcat tagaaaagtc tttttcttat aaaaattgga tttctctagc agaggcaaca      1260
     ctaacgtcaa tccatgtatt caacagacga cgagcaggag aaatagaacg aatattaatt      1320
     aatattaatt gaagacttca aaaataatga aagaataaat aaaaacatgt acagtgatat      1380
     atatacatca ttatcagaag agaatcgaaa aatagcagaa aattatagtc gattctgcat      1440
     aagaggaaaa ttaggacgta ctgtgccggt gttattgacg aatgagctgc ttaaatgtat      1500
     tcatataatt ttaaaatttc gtaaagaagc caaagtgtct gaaaaaaatc cgtatctttt      1560
     tggattacgc ggttctaaca aaaataggta caggtaccta agagcttgca ttttaatgcg      1620
     taaattctca agcgaatgca atgcaataga atcatcaagt ttacgcggca cgattttacg      1680
     gaaacacgta gcaactcatt gtatacaatt gaatctgaat gatatcgatg tttccgattt      1740
     agctacattc atgggacacg cagaaaaaat tcatcgagag cattatagac aacctctagc      1800
     tagtagagat attcttaaaa tctcgcaata tttagaggca gtccaaggta atgaacaaga      1860
     tttaaacgaa tcttcatcag atagcgaata cgaagatgga gaagatgaga ataataacga      1920
     cataataatg gacaaagaga atgtttcttt aagtaattat attaga                     1966
//
ID   CryptonV-N1_BTa repbase;    DNA;    INV; 2424 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; CryptonV-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2424
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 510-510 (2018).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to the consensus.
XX
SQ   Sequence 2424 BP; 755 A; 471 C; 438 G; 760 T; 0 other;
     ttggcgcgta tacgtagtat accgcctttg cgatcgtttc gacccccccc tcgatacaat        60
     aaccgagtcc cctagttcct taccgaaaag tgactaccgc gaacttctga gattttccaa       120
     agcgtgtaaa aagtttacta atccgtcaat aataatgatt aaaatttgtt tctcattctg       180
     gggctcgcta gtttatgtgt aatgaatacc aagagtctac gtttcttggt tttttttaaa       240
     aaaaccttag aatggggcgc gctgatttaa aatatgcata tataagcgga agcaagcgaa       300
     ctgattcgag gatggctgac cagttcggca ctccttgaat gagaatttca ctcactccgt       360
     tttgttcaca acgttgcttt gacatatctc cacaacactg ttatcctttt caaaagttgg       420
     tactccttgc tctgatagcc ggggccacca ggatagtggt aagtgcaatc tgtgatgagc       480
     ctcgagactc attagaccat ttgctaaacg tggctcatac aggagtccac taagccctct       540
     cgtccccacg ctcctgatca ctgcgtcggc gtcacgaaga acaatgggcc ttgggtccca       600
     acgcggccga tacccgtacc ccaattactc acgcttcatt aaccatttca ccgtcacgct       660
     aggattcatc caattttcaa aaaaaattgt ttcgcatgta tttagcaatt ttttccttac       720
     tctccgttaa aacacaaata aaaagagacc tcattcataa aaatcggccg aatagaagag       780
     aagttacagt aatcgaaatc cgaagaaatc aacaaaacct cgactcctcg atacgaaaaa       840
     taaaatgaag gggaaaaaaa gaaagtataa attacaatta aatataattg acctcaaaat       900
     ttgacaaaca attcatttat atacctaacg ctgaaaaaac tgggagaaat tacaaaaaat       960
     ttgcctcttg caaggggctt ctttgtaaga attttgacct gaagacaacg gtcgaataac      1020
     agcagtactc catacaatac acggtgtgcc tgaacgagtt aaacattttt catacgtcca      1080
     aatcgaaaaa tctttatatt tttaactaca atgtttcttg aatcgtttaa gcaaaaaaaa      1140
     aaaaaaaaaa aattccgtcg agattctgga acgcaaaggc gctttaaaag tattctgggg      1200
     ctataatagc taaatcaccg gtagtaaatt cgttatatta ttaaaaagaa attgactcca      1260
     tagtttaatt ccttagtttc ttgaatacga ttattttaag cacttaaaca tttataccac      1320
     caattttagc catggggtga tttcctgaga gccgataata tcacgaattt ctcatagaac      1380
     ccctcaacag tggcttgctt ttttggcagc cgattcggcc atcgaaccgg agtttaaatg      1440
     gaagctgata ataacccaaa gctctgagaa aaattttgag atgagtataa gaacggtttg      1500
     ttgtaagtag cgaggagagg cgggcaaagc ggctaaaatc ctatctaatt tttacagttt      1560
     ttctgttgaa ttaatgttgc cgcgggcttc tgactgtcca cacatagttc tgttcagcat      1620
     atcgatacat aagtatttac attttacata cgtagaatct aattttcacg tcggggagtt      1680
     gacatatttt gattttttcg attttatacg gaaaattgat ggtttttcgg gattgaaatt      1740
     attattgttt catgaaaaat aaatgcaccc aaaatgacta tagcatattg attcttacac      1800
     atttgcactc acaaaattgg ttggtaaatt caacgagtgg gtgcatcgac ctggtatatc      1860
     aagtttctgc aattttttac ggcaaatcag tagattttcg ggatgtagat tgcttacttt      1920
     caattcatga atgaataaag caacgacatg gttgaacttc tttgcatgga aagacgttta      1980
     aaataacaaa atcaagacgt atttaatgca attgcattta tatcgagtca atttcttttc      2040
     aataatataa cgggattttt actaccggtg atttgggtat tttagcccca aaataccttt      2100
     aaatcgactt tatcttctag gagttcgaca gaatttttcc tttcttcgct taaattattc      2160
     cgtagcactt ttcttcaaga atctgataag attttgcttg aggcagatca aaaaacttaa      2220
     attcgatcga atagctttct actttcacaa tacacggtct cgtcaaggtg cgtctttgac      2280
     ctcgcagtgt tggatcgtga attctctttt tatgctgttt gcctattttg aaatctctgt      2340
     aaatgaaaac taaaggggtt gatatgtgcg agttaatgac gcgccttatc aacacattgt      2400
     gttggagttc actgcttgtt tttc                                             2424
//
ID   CryptonV-N2_BTa repbase;    DNA;    INV; 956 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   CryptonV; Crypton; DNA transposon; Transposable Element;
KW   Nonautonomous; CryptonV-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-956
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 516-516 (2018).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to the consensus.
XX
SQ   Sequence 956 BP; 282 A; 225 C; 171 G; 278 T; 0 other;
     ttttaagcgt gccagtaggg ctcgcttttt gaaatcactc ggatgtacca tagtacagca        60
     caccgatcaa ccaatgctat tcaacgggcc gtccaaatat ttttttcctc ggacccgttt       120
     tcttgtcttt gaaccattat actgtcaagc cctgatggtc tcttaccaaa aaaccgaatg       180
     aactgctaat tgggaaccct tgagaacatt ttcctgtcaa aaccgtatta tttcatttga       240
     caaaaacctc atagaagctt tcttacgctc ggaggactca actctagaac cttctttccc       300
     gccaaaactg tttagccaat gagcgtcttg cactgcaagt gcaatctgtg atgagcctcg       360
     tgactcttta taccatgtac taaccgtggc ccctgcagaa atccactcaa accactgcag       420
     ttatctcccg atatagcttt gggtgtcagg tttcgagcaa ggcaataaaa gacggcgagg       480
     agagggtcgc ctcgtcgaac ctattatctt ccacgcccga ttaaccattc accgtgacgc       540
     caggatccac caaattttca caaaaattgt tttccgtcta tttagcgagt ttttccttac       600
     tttccgttaa agtacaaata aaaagagacc tcatttgtaa aaatcggccg aataggagag       660
     aagttacagt tcgaaatcca aagagattaa ctcaacgcga tttcgatgca cggcagttcg       720
     cccaaatcac ggtcgtgcga aatgccgcat atcagcttaa aatcaagata attggacgga       780
     atctttaaaa tcaatttaca ttcaacgttc atgaatcaat attttctccc aaatttagca       840
     aaaagtacca attgatgcaa ataacaaaga cgtgaaaata gtaggtatgt gtccaacatt       900
     ttagttattc ggcacgcttt tccaacatat tcatgttgga tttttctgct tgtttt           956
//
ID   Damoeto     repbase;    DNA;    INV; 7637 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Damoeto.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7637
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-353, and
CC   7285-7637). 3 amino acids of ORF3  overlap the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1255..2592
FT                 /product="Damoeto_1p"
FT                 /translation="MTSPFLLYRTTRRQCSDSDSDCDDHRIRRSVPRRTHS
FT                 PPPSPRPTDSVMDPDQLRLIIQAAVTAALAEQAATNKVLIDKVESMAQQLA
FT                 AAHITPPEVQAYAPIEIRNDIRCDEPLDAVKCLPEFAGAHESYVSWRQAAL
FT                 AAYHIFRPYDGSSRHYQAVIIIRNKIIILASFGTALNFDAIISRLDFPYSD
FT                 KRPVHVIEQELATLRQGSMSLLQYYDEVGKKLTLLTNKVNMSYEPVLAKGL
FT                 CEKFREDALRVFVSGLKRSLTDVLFSAKPRDLPSALALAQEVESNHERYAF
FT                 AANFARSIEEKEHKASTKQRVKPPQQEAQASGSKNPHFSRQNKQQGQFGLR
FT                 NAEQQTRASAPEPMEVDPSLSRYRQPTQASAGVSKRSAMSDRSNGKGKQQR
FT                 VNHVTQDAGQGQTSYAEAANGAVAQIEDDAESDSDALNFLGENPCYPSSDE
FT                 E"
FT   CDS           2607..5645
FT                 /product="Damoeto_2p"
FT                 /translation="MSFLIDTGTSKNYIKPHKGLRGVRPVNSQFTLHSIHG
FT                 STTVTQKCLVALFNVKATFFILPDLSTFDGIIGLDLLAQAGASLCLASGQL
FT                 KWGTEVEKISFHKCTDVNFTDVDCSDAPASVRETFRKLLKARKKAFADPNE
FT                 ALPYNTSVVATIRTVSEEPIYAKLYPYPMGVADFVNKEIQDLLRNDIIQKS
FT                 ASPYNNPIWVVDKKGTDDAGNRKKRLVIDFRKLNEHTIPDKYPMPNISMIL
FT                 CNLGKAHYFSTLDLKSGYHQDVLAERDREKTSFSVNGGKYEFKRLPFGLRN
FT                 AAGIFQRTIDDILREQIGKFCYVYVDDVIIFSQDEEAHIKHVEWVLKSLQE
FT                 ANMRVSIEKSRFFKKSVSFLGFIVTSNGATTDPEKVKAIKEFPEPKTVFEV
FT                 RSFLGLASYYRCFIRDFAAIARPISNILKGENGTVSRHRSRNIQVHFSGSQ
FT                 REAFQKLRNILASEDVMLSYPDYKKPFDLTTDASAHGIGAVLSQEGRPITM
FT                 ISRTLKDSEANYATNERELLAIVWALAKLRHYLYGVKDINIFTDHQPLTFS
FT                 VSESNPNAKIKRWKARIDEFNARLFYKPGKENLVADALSRQQLNVLEQEEP
FT                 ESCAATIHSEVSLTHTIESTDKPLNCFQNQIILEEARFPSKNTFILFGNKR
FT                 RHTVNFVCRGSLLDELADTIVPRAVNAFHCDLHTLAMIQDEIVRRFPATKF
FT                 WHCRNRVVDVLRIEERREILTAEHNRAHRAAQENVKQVLSEYYFPKMAKLA
FT                 NEIVQNCRTCARAKYDRHSRKQELGETPIPSHTGEMLHIDIFSTDKKFFLT
FT                 CVDKFSKFAVVQPITSRTIEDLKPALLQLMNFFPRAKTIYCDIEPSLKSHT
FT                 IVSMLYNNFGVSITNAPPLHSTSNGQVERFHSTLLELARCIKIDKGLSDTV
FT                 EIVMLATTQYNKSIHSVIDRRPADIVLTHPDEPQPEIRKRIQKAQTALRAR
FT                 ENASRQNRTFDVGEKVLVKSNRRLGNKLTPLCEERAVEADMGTTVLIEGRV
FT                 VHKDNLK"
FT   CDS           6044..7291
FT                 /product="Damoeto_3p"
FT                 /translation="MRNLLKVDSAHLRDLLDALGAHHRVARSLDFLGSILK
FT                 VVAGTPDASDLQNSRVVEARLIDANNRQIEINTKIQSQINKLTATVNLILK
FT                 TAKASQIDSGHLYETLLARNRMLMMELQNLMLSVTLAKMNIVSPNILDHAD
FT                 LSSVWLEEPTNTPIGDLMSVSSVKVLQSNNALHFIIKFPVIKFACKKITIF
FT                 PVSHEGAMLRLDDGVIAECDNEVYTVKACTASTSATFCQLSSGSSCAKELH
FT                 AGGEAHCEIQPSSLDPITYVDEGIVIINDRAAKVRVDNGSEIWVHGTHLVT
FT                 FTRRAVINGTLYVNQNGIQSRVPGVAKFPLLNITSHQSVLSLPYLHRLNEG
FT                 NLETIQRFREEFNAELPQRVALTVAASCCLLLCVAIVGWRAWKAKRSARRL
FT                 NVAIAELRSAEGGLRLEGGVVN"
XX
SQ   Sequence 7637 BP; 2220 A; 1883 C; 1762 G; 1772 T; 0 other;
     agttaactaa agctaacgtc gctcccacgg gcgcatgaaa tacgacgaca tcggcatact        60
     gtaacgtaag cattatgccg gaagtcgata cgtagccggc agacactgca gatttgcgtg       120
     gccgctacga atatgggatc gcaacaatgt gtttcgtttt catgctagct cataagtttg       180
     aattcttgta tttttatatt cagttctgat tttgcctccg acgctacagc tccgcttggc       240
     tcgggataat aaagcattaa aagtaaactc ctaatctttt attgtcacgg ctccgcctga       300
     cgtccgatta gtaaaagccg cgcgcgttaa ccgccggcca acctttccta attggcgccc       360
     aaccagtggt atttgacagt gcgtcagtca ttacccacaa acttaaaaat ctctaaaaat       420
     ctaaaatttt actaaaagta aataaaactc agccacatca acagggctta gtgacaagca       480
     agcttaaaaa tttctaaaaa tctaaaatct aactaaaagt gaataaaact cagccacgtc       540
     aacagggctg tagtgacaaa cgtcaagtgc caacaacaaa aacaagtgct tgtgaccact       600
     gttgcttaca acagaacaat ctgacaagtg gctactgctg acctacgtca acacaggcag       660
     cacagcggaa acgtcattga actcgcctct tgagtgcagt tggccgaggt gcgctatagc       720
     gcaaatttaa tttcacgtaa caccgaagcc gctggagctc ttcgggcagc gacttatcag       780
     attagcgcgc aagctatctg gacaactggg aggcagagac aagcggtgta caacaacaga       840
     caccgacttc agtttgggac gcaacacaac accaaaaaat gtaagtggga acctttcttt       900
     aaactgccct aaaacctgcg aaataaaaat aagcacataa gcacagtttt tgcaagtgtc       960
     ttgtcttaaa tgtaattaaa taataaaaag tcttaaaata cgtgaaacta gtagtggatt      1020
     aagttgacag aaaatagtaa actattggca gcaaaaatac ataaatattt gttgaataat      1080
     tacaaaaagc ggcgcaccaa acgcatgcgc gcacaaatat tttttttccg tctgcctttg      1140
     tttcaattgt tttgtttggt cgttcaacgt aatacgatcc gtggaatttg gcaactttgt      1200
     tgcctccatc ctcaagtgtt gtgttcaagt tttcgttgtt tatattagag gcatatgact      1260
     tcacccttcc tcctctatag aaccactcgc cgacagtgta gtgattctga ctctgattgc      1320
     gacgaccatc gcattcgccg ttcagtgcca agacgcacac actcaccccc accctcacct      1380
     cgtcctacag acagcgtcat ggacccagac cagttgagac tcataataca ggcagccgtc      1440
     accgctgcct tagctgagca agccgctaca aataaggtct tgattgacaa agtcgagtca      1500
     atggcccagc agctggccgc agcgcatatt acgccaccag aggtgcaagc ttatgcaccc      1560
     atagagataa gaaatgatat ccgctgcgac gagccattag atgccgtcaa atgcttgccc      1620
     gagtttgcag gcgcacatga atcgtatgtt tcatggagac aggcggctct cgcagcctat      1680
     catattttta ggccgtacga cggcagttca cgccattatc aggcggtcat aattataaga      1740
     aacaaaatca tcattctagc ctctttcggc acagctctta acttcgacgc gattataagt      1800
     cgcctcgact tcccgtacag cgacaaacgt ccagttcacg taatcgagca agagctggcc      1860
     acgctgagac aaggcagcat gtctctgctg caatactatg atgaagtcgg caaaaagctt      1920
     acattgttga ctaataaagt caacatgtca tacgagccgg tcctagcaaa gggcctctgc      1980
     gaaaagttcc gcgaagatgc actacgtgtg tttgtttcgg gactcaagcg tagtctcaca      2040
     gatgtgctgt tctcagcaaa gccaagagac ttgccgtcag ctctggcgct cgcgcaagag      2100
     gtggaatcga accatgaaag atatgcgttc gctgccaact tcgcgagaag cattgaggaa      2160
     aaagaacaca aggcaagtac caaacagcgg gtcaagccac cccaacaaga agcacaggca      2220
     agcgggtcaa agaacccaca ttttagtaga cagaacaagc agcaaggcca attcggcctg      2280
     cgaaatgccg agcagcaaac tcgcgccagt gctccagaac caatggaggt agacccttcg      2340
     ctgtcaagat atagacagcc cacccaggcc tccgctggcg tcagcaagcg gtcggccatg      2400
     tccgatcgct ctaacggaaa gggcaagcaa caaagggtga atcatgtaac ccaagatgcc      2460
     gggcaggggc agacctcgta cgccgaagcc gccaacggcg ctgtggcgca gatcgaggac      2520
     gatgccgaaa gtgattctga cgccctcaat tttttagggg aaaatccctg ctacccgtca      2580
     tcagacgaag agtagcaggg caggatatga gcttccttat tgataccggc acgtccaaaa      2640
     attacatcaa accacacaag gggttgcgtg gcgtccgtcc ggttaactca caattcacct      2700
     tgcattctat ccatggctca accaccgtca cacaaaaatg ccttgttgcg ttgttcaacg      2760
     tgaaagcaac attttttatt ttaccagact tgtcaacctt cgatgggata atcggtctcg      2820
     atttgttagc tcaggctggg gcgtcactct gtttggcctc cggtcagctc aaatggggta      2880
     cggaagttga gaaaatctcc ttccacaaat gcactgatgt caatttcacc gatgtggatt      2940
     gctcagatgc acccgcttca gtgcgggaga cttttcggaa attattaaag gccagaaaaa      3000
     aggcctttgc agacccaaac gaggctctgc catacaatac ttcggtggtc gccaccatca      3060
     gaacggtgag cgaagagccc atctatgcca agctgtaccc atatcccatg ggcgtagctg      3120
     acttcgttaa taaggagatc caagatcttc taagaaacga tataattcag aaatcggcat      3180
     ccccctacaa caaccccata tgggtagtag ataaaaaggg caccgatgat gcgggaaacc      3240
     gcaagaagcg cttggtgata gactttcgca agcttaacga gcacaccatt cccgataaat      3300
     accccatgcc aaatatatca atgatattat gcaatttggg caaagcacac tatttttcga      3360
     cactggatct taaatcagga taccatcaag acgtactagc ggagcgcgat cgcgaaaaaa      3420
     cttccttctc ggtaaacgga ggaaagtatg agtttaagag attgccattt ggcctcagga      3480
     atgccgccgg catcttccaa agaacgatcg atgacatcct acgggaacaa ataggcaaat      3540
     tttgctatgt ttatgttgac gatgtgatca tcttctcgca agacgaggag gctcacatca      3600
     aacatgtaga gtgggtgcta aagagcttac aagaagctaa catgagagta tcgatcgaga      3660
     aatcgcgttt ttttaagaaa agcgtgagct ttctcgggtt cattgtcacc agtaacggtg      3720
     caacaacgga cccagaaaag gtaaaggcca taaaagaatt cccagagcct aagacggtat      3780
     ttgaagtcag gtcgttcctg ggcctcgcga gctactatag gtgtttcatc agagacttcg      3840
     ctgctatagc aaggcccatt tcaaacatat taaagggcga aaatggaaca gttagtaggc      3900
     atagatcgag gaacattcag gtgcatttct ctgggtccca gcgagaagcg ttccaaaagc      3960
     tgcgcaatat attggcatca gaagatgtca tgctcagcta cccggactat aagaagccat      4020
     ttgatctaac gacagatgct tcagcccatg gtataggtgc ggtgttgtct caagagggcc      4080
     gccctataac aatgatttca agaactctta aagacagtga agccaactac gcgactaacg      4140
     agcgtgagtt attggctatc gtttgggccc tggctaaact gcggcattac ttgtatggag      4200
     tgaaagatat aaatatcttc actgaccatc agccgttaac attttctgtg tcagaatcaa      4260
     acccgaacgc aaaaattaag aggtggaagg cccgcataga cgagttcaat gctcgtctat      4320
     tttacaagcc cggtaaagag aacctggtag cggacgcctt gtccagacaa cagcttaatg      4380
     tgctggagca agaagagccc gaatcttgcg cagcaacgat tcacagtgag gtgtctctca      4440
     cccacacaat cgagtcaacg gacaagccat tgaactgctt ccagaaccag ataatactgg      4500
     aagaagcacg tttcccgtct aaaaatacct ttattttatt tgggaataaa aggcgccaca      4560
     cggttaactt cgtctgcagg gggtccttat tagacgaact ggcagacaca atcgtcccaa      4620
     gggccgtaaa cgccttccat tgcgatttgc acacgctcgc aatgatacaa gatgagatag      4680
     tccggaggtt cccagccaca aagttctggc attgcaggaa ccgtgtcgtg gacgttctca      4740
     gaatcgaaga aagaagggaa atcttaactg ctgaacataa tagggcgcat agagcagcgc      4800
     aagaaaatgt aaagcaggta ttgtcggaat actacttccc caaaatggcc aagctggcca      4860
     acgagatcgt gcagaattgc aggacttgtg cgagggcaaa gtatgacagg cactcgagaa      4920
     aacaagaact cggtgaaaca ccaataccgt cacacacagg ggaaatgttg cacatcgaca      4980
     ttttctctac cgacaaaaag tttttcctca cttgcgtcga caagttctct aaatttgccg      5040
     tcgtacaacc aatcacctcg agaactattg aagacctgaa gccagcgctg cttcagctca      5100
     tgaacttttt cccgagggca aagaccattt attgcgacat cgaaccgtcg ttgaagtcgc      5160
     acacgatcgt gtccatgctg tataacaact ttggtgtaag cattacaaac gcaccaccac      5220
     tgcacagcac ctccaacggg caggtggagc gtttccatag cacgttgctg gagctagcca      5280
     gatgcataaa gatagacaag gggttgagtg atacggtcga aatagtaatg ttggccacta      5340
     cccagtataa taagtcgatt cactcggtca tcgacaggag accggctgac atcgtcctaa      5400
     cacaccccga tgagccacag ccagagatcc gcaaaaggat ccagaaggct cagaccgcgc      5460
     tgagggccag agaaaacgcc tcgcggcaga ataggacatt cgatgttggc gaaaaagtgt      5520
     tggtaaaatc caaccgaaga ctcggcaaca agctcacgcc gttgtgcgag gaaagagctg      5580
     tagaagcgga catggggacc acggtcctca ttgaggggag ggtggtccac aaggacaatt      5640
     taaaatgacg cgctcagcag cgaggtcagt gtttcgctta attttaaatt ttttctagcc      5700
     acttggcgta atttttaata gatctaagcg tagcgccatc cgcgcacatt atattcttaa      5760
     gcatttttat tattattggt gttgggttcc ccttgtctac aaaatagaaa aatcaaccat      5820
     ttaaactttc acccacagga ccaatcttat ccttctcgtg tctctatcat tggcatcggc      5880
     tcacatcacc gattattcgc gcgccaaata cattcccata gtcgatggcc agatcttggt      5940
     gtgggagaat ttcgcctacg tgagacactc cgcgaatctt tcggagtacg cacgtgtagt      6000
     agaggagacg gtcggtctgc ttagccactt cccgcagtca cacatgagaa atttgctgaa      6060
     agtagattca gcacacctcc gggacttgct ggatgcgctg ggcgcgcacc atcgagtggc      6120
     cagaagcttg gacttcctgg gctctatact taaggttgta gccggtacac ctgatgccag      6180
     cgatttgcaa aacagtaggg tcgtagaggc gcgattgata gacgcgaaca ataggcagat      6240
     agaaatcaac acaaaaatcc aaagtcaaat caataaatta actgccactg tcaacttaat      6300
     cctcaaaaca gcaaaagcgt cgcaaattga ctccggtcat ttgtatgaaa cgttgctcgc      6360
     gagaaataga atgctcatga tggagcttca aaatttaatg ttgtccgtga cacttgcaaa      6420
     aatgaacatt gttagcccaa atattcttga tcacgcagat ttgagttcag tttggctaga      6480
     ggagcccacc aacaccccca taggggacct catgtccgta tcgtccgtaa aggttctgca      6540
     gtccaataac gcattacact ttatcattaa atttccggta attaagttcg cctgtaagaa      6600
     aattactatc ttccccgtca gtcacgaagg agccatgcta cgtttagatg atggcgttat      6660
     cgcagaatgc gacaacgagg tctacaccgt caaagcttgc accgcatcaa ccagcgccac      6720
     cttctgccag ctatcatcag gcagctcttg tgcgaaagaa ctccatgcag gcggcgaggc      6780
     gcactgcgaa atacaaccca gcagcctgga ccccatcacc tatgtagatg aggggatcgt      6840
     catcatcaac gacagggccg ccaaggtacg agtggacaac ggctctgaaa tctgggtgca      6900
     tggtacgcat cttgttacct tcacccgacg tgccgtcatt aacggaaccc tgtacgtcaa      6960
     ccagaacggg atccagagca gagtaccggg ggtagcgaaa ttccctctgc tgaacatcac      7020
     ctcccaccaa agcgtgctca gtctcccgta ccttcatcgc ctaaatgaag gtaacctaga      7080
     gacaatccag aggttcagag aagaattcaa cgccgaacta ccccagcgag tggcactgac      7140
     cgtagcagca tcatgttgcc tcctgttatg tgttgccatt gtgggctggc gcgcctggaa      7200
     ggccaagagg tccgcaagac gactgaacgt ggcaattgct gagttaaggt cggccgaggg      7260
     cggcctccgt cttgaggggg gggtagttaa ctaaagctaa cgtcgctccc acgggcgcat      7320
     gaaatacgac gacatcggca tactgcaacg taagcattat gccggaagtc gatacgtagc      7380
     cggcagacac tgcagatttg cgtggccgct acgaatatgg gatcgcaaca atgtgtttcg      7440
     ttttcatgct agctcataag tttgaattct tgtattttta tattcagttc tgattttgtc      7500
     tccgacgcta cagctccgct tggctcggta taataaagct taaaaagtaa actcctaatc      7560
     ttttattgtc acggctccgc ctgacatctg attagtaaaa gccgcgcgcg ttaaccgccg      7620
     gccaaccttt cctaatt                                                     7637
//
ID   Daphne-10_HMM repbase;    DNA;    INV; 2255 BP.
XX
AC   .
XX
DT   06-MAR-2013 (Rel. 19.10, Created)
DT   06-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-10_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2255
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2791-2791 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..531,444..1967)
FT                 /product="Daphne-10_HMM_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="KTIIDHVISNLKETKFHFSVIDSTLSDHKQIYLEVKK
FT                 FTSSRPRKVSYQAIDYKKLYNNTLENTITNEFNLFNIFQEKILNNIKASTI
FT                 NKIKIMNPPRQDWISKTIINEINDRNILWKHHKTSPNCKKKEQLFIKKRNE
FT                 VMEKIQHNKRSYYIRSFKACLKTLEKCGISLIASLQTNKILLYQIVQSVFK
FT                 NSRKMWDLLNSLSANKLKSTTLTNKLQTDQGIITDENKICEYFNTYFCNIG
FT                 VNLANQIPNTHYNSPPGAEHSIRPIKTLCRFEPTNKAEVAIIIDNLSCNVS
FT                 SGCDQISAKSLKSIKYLILSELTACINRCLEEGSFPDCLKVAKVTPIYKSG
FT                 SRTEPGNYRPISVLPVLSKIFEKIVYTRLESFLNSQNFFYNKQYGFRPKSN
FT                 TLSATIDIVTKIKLCIDKKQVALGVFIDLKKAFDTVSHELLLKKLSEIGIK
FT                 DNAFKVLESYLTNRLQIVKVREIQSNPQNITYGVPQGSILGPLLFLIYINS
FT                 IHNINLHGDVSLYADDTNLFYYGSHLESILKDAQEDLKRLNLWFQSNLLTV
FT                 NASKSNYIIFAAKNKKISHKIVLHINNEAITQVDQEKYLGLILDSRMTWKP
FT                 HIYKIKSKLTSLMGVIRNIVRCLPRKVLYITYNSLIKPXIDYLIEVWGSAA
FT                 KXNLDVLQTAQNKLIKVLXKYDFRTXTKKYIMKQGS"
XX
SQ   Sequence 2255 BP; 924 A; 367 C; 318 G; 640 T; 6 other;
     aaaacaatta tagatcatgt aatctcaaat ctaaaggaaa caaaattcca tttttctgtt        60
     atcgattcta cactatcaga tcacaagcaa atatacttag aggtgaaaaa attcacatct       120
     tctcgacctc gaaaagtatc ttaccaggct atagattata agaagctata taataataca       180
     ttggaaaata ccattacgaa tgaatttaac ttatttaaca tatttcaaga aaaaatatta       240
     aataatataa aagctagtac aataaacaaa attaaaataa tgaacccacc gagacaagat       300
     tggataagta agacaattat taacgaaata aatgacagaa atatactatg gaaacaccac       360
     aaaacaagtc caaactgtaa aaaaaaggaa caactcttta ttaagaaaag aaatgaagtg       420
     atggaaaaaa tacagcataa taaaagatct tattatatca gatcgttcaa agcgtgttta       480
     aaaactctag aaaaatgtgg gatctcctta atagcctctc tgcaaacaaa ttaaaatcga       540
     cgacactaac taacaaatta caaacagacc agggaataat aacggatgag aataaaattt       600
     gtgagtattt taacacgtac ttttgtaata ttggcgtaaa tttagctaat caaattccca       660
     atacacacta caacagccca cctggagctg aacattccat tcgaccaatc aagacattgt       720
     gccgatttga accaacaaac aaagcagaag ttgccataat catagataat ctaagctgta       780
     atgttagttc aggttgtgat caaataagcg caaaatcact aaagtctata aaatatttaa       840
     ttttaagtga acttacagcc tgtattaata gatgtttgga agaaggatct tttccagatt       900
     gcctcaaagt agctaaagta acaccaatat ataaatctgg tagtagaacg gaaccgggaa       960
     actaccgacc aatatcagtt ctccctgtct tgtcgaaaat ctttgagaaa attgtatata      1020
     cacgtcttga atctttttta aatagtcaaa atttctttta taataaacaa tatggatttc      1080
     ggccaaaaag taatactcta tcggcaacca tagatattgt gacaaaaatt aaactttgta      1140
     ttgataagaa acaggttgct ctgggtgttt ttattgattt aaaaaaggca ttcgatactg      1200
     tgagccacga attactttta aaaaaactaa gtgaaatagg aattaaagat aatgctttta      1260
     aagttttgga atcatatctc accaacagat tacagatagt aaaagtaaga gaaatacaaa      1320
     gtaaccccca aaacattact tatggagttc cgcaagggtc aatcttggga ccattgctct      1380
     ttcttatata tattaacagc atccataata taaatttaca tggcgatgta tctttatacg      1440
     ctgatgatac taatcttttc tattacggaa gtcatttaga atctatatta aaggatgctc      1500
     aagaggattt aaagcgactg aatctttggt ttcaatccaa tttgctcaca gtcaacgcat      1560
     ctaaatcaaa ctacatcatt tttgctgcaa agaataagaa gatatcccac aaaatagtgc      1620
     tgcacatcaa taacgaagca atcacacaag tggatcaaga aaaatattta ggattgattc      1680
     ttgatagcag aatgacatgg aaaccacata tttataaaat caaatctaaa ctaacatctt      1740
     taatgggagt tattagaaac attgtgcgct gtttaccacg caaagtactt tatatcacat      1800
     ataactccct tattaagcca satattgatt atttgattga ggtatggggt tcggctgcga      1860
     agwgcaactt agacgtktta caaacagcac aaaacaaatt aataaaagtc ctattmaaat      1920
     atgatttccg tactkcaact aaaaaatata taatgaaaca gggctcctaa atatttatca      1980
     aacctatgta tataacagct gtcttttagt acgtaaaata ttaagcaaag acatacatac      2040
     aaacattaca tttacaaaaa acaaagtata caaaaaatca gactaagaaa tgctacgaca      2100
     tcaaacttca caaaccgcga actaattatg gcaaaaagaa tataatgttt gaaggtgcct      2160
     atttatataa taaactacca aaggatatta aagaatcaaa atcaacgtct aaatttaaaa      2220
     gactwcttaa aaattacgta aaaaatgtaa tgcct                                 2255
//
ID   Daphne-10_LMi repbase;    DNA;    INV; 4470 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4470
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3124-3124 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1038..1586,1541..2023,1999..2694,2691..2969,
FT                 2906..3184,3121..3435)
FT                 /product="Daphne-10_LMi_1p"
FT                 /translation="MYGKNLNRRRAATTKATEEEDQQNRQRQYRQPNINIX
FT                 RNCCLPYMQQKANPAFFMVNNGREKDSKLCETSFPCVQYESCTPQTALSIS
FT                 ELKKATPSNHAIAKVSKNQTLSIFHQNICSLKNKIDQLLISLKDECESELD
FT                 ILCFSEHHVINGIQMLQIENFSLATHYCRLLWKRVGLQFLLRIIIVMEKGG
FT                 VAIFVKNNIVYNSLDLSKYCIDQHFEVCGIQLTAESATIIVLTVYRAPAGN
FT                 LNVFLRQIESLLSHLCRKTKSIIVMGDFNVNFLTENNKKTDFEHLMYCYNL
FT                 VSVVDTPTRVTSSSSTLIDNVFLDKDIYNNITVKIIVNGLSDHDGQFLTLN
FT                 KWTVPHSKQINVQRKSNFIWKNFRIIDRHTIESFKHKLQLVDWSPVYTTAD
FT                 VNSKFNIFSNEVTSLFEETFPKKXXRENLLKSGNKPWLTKGIKISCKTRKE
FT                 LYAEAKRSNDPSRIRHYKLYNKILNKTIQAAKNMCLKVDIDNSSNKVKTIW
FT                 NFVKKETGKNAGCSETIHIKSEGHLVSDPKKVADTFNKHFLTVTEKIGLQG
FT                 SMNQAMNFLKAKVPITIQQMKVKTVTVKKEIEKIIKSLKSKNSTGVDNISN
FT                 KLLKYCCSQVSKVLCHIFDASLKQGTVPERLKYAAVKPLYKKGDKTDTANY
FT                 RPISLLTSFSKVLEKLCMRGLSANITIDKFFKGFRETMHARIVKHLSKHNI
FT                 ISKSQFGFQEGLSTEDAIFAFAGKVLDSINKKLKVAGIFCDLTKALTVSVT
FT                 KFFYKKLHISAPNKSFDCVSHQILLQKAAHLGISGSAGKWLDSYLSNRKQK
FT                 VVLDSEAGVPISSEWGTITCGVPQGSVLGPLLFIIFINDLPLCTEYCRFTI
FT                 FADDTTSIDNSVIN"
XX
SQ   Sequence 4470 BP; 1673 A; 755 C; 825 G; 1212 T; 5 other;
     gcactgtgtg tacaagtgaa tagtagtgtt cttgcaaaaa atgaaaacaa atgacagtaa        60
     aaatacagtg tgtgtgaatt gcaaggacga aattatgaag ttaagtgggc gtatttctag       120
     ccttcagcaa atcatcgatg taatgagtag tgatatatta aaacttcaac acaaaatgag       180
     tgagtcgtca atcaaacaga agcccagttt tctgccgcaa aaaaactcta acgagcggac       240
     gaactttcag tataaagaca gtggagtgaa cacaggaaaa acgctaagga gtgaaaacac       300
     caaacacttg acagagaaaa acaaatttca cgtacttctg tgaatgaaga ggcggtaagt       360
     gaacatgaac ctttgaacga acttgcagga aggtgatgag gctctaagtt cagctttaag       420
     gaaaacaaaa aggtgaggaa tttaacatgc catcttctgc atgtattaag gtaattaatg       480
     agaaagacat tgtcagcaaa aacatgcaac agtcgaaaca cgaaagcaat gtgttatttt       540
     taacagacag tcatggcaaa aacttagcta gattattcag agacaacaga aaatgcaacg       600
     caacaagtat tgtgaagcca ggagcaacaa cgaaaaacat tattggtgtc aacctatgtg       660
     acaaaatgtt gagtaaaaat gactatgtag tgtgtgtaac aggcacgaac gatgttgcta       720
     aaaacgaggc aaataactgc ctaacagaac tacagagttc ctggaatgac ataataaaca       780
     gcgaaataca atagtgcaac cttaccacac cgatatgatt taatgtatca ctcatstgtt       840
     aacaaagaga tacgaaaaac tacatgaaaa taaaacaaat gtgttcttgg ttcaaaaatg       900
     cagcgttctt gaactaggta aattggacag atgccagcat accaggcatg gatgcttgaa       960
     ttacgaagga aaaagcttca tgtgtaaaat gacaatgaaa tcattgcgaa caggsagaga      1020
     gcaaacaaca aaattccatg tatgggaaga atctcaacag aagaagagca gcaaccacaa      1080
     aggcaacaga agaagaagat cagcagaatc gtcaacggca gtaccggcag ccaaacatca      1140
     acatatscag aaactgttgc ctgccctaca tgcaacagaa agccaaccca gcgtttttta      1200
     tggtgaataa tgggagagaa aaggattcca agctgtgtga aacatctttc ccatgtgtcc      1260
     agtatgaatc ttgcacaccc caaacagcgt tatcaattag tgaactaaaa aaagccactc      1320
     ccagcaatca tgcaatagct aaggtgagca aaaatcaaac tttgtctata ttccaccaaa      1380
     acatatgtag tctgaagaat aaaatagatc agttgctaat aagtttaaaa gatgagtgtg      1440
     aaagtgagct tgatatactg tgtttctcag aacatcatgt tataaatgga atacaaatgc      1500
     tacagattga aaacttcagc ttagcaaccc attactgtag attgttatgg aaaagggtgg      1560
     ggttgcaatt tttgttaaga ataatatagt gtataattct ctagatttaa gtaaatactg      1620
     tattgatcaa cattttgagg tgtgtggcat tcagttaaca gcagagagtg caacaattat      1680
     tgtactgact gtttacaggg cacctgctgg aaatctgaat gtatttctga gacaaattga      1740
     atcacttctg tcccatctgt gtaggaaaac taaatcaatc attgtaatgg gtgacttcaa      1800
     tgtgaacttt ttaacagaaa ataataagaa aacagacttt gaacacttga tgtactgtta      1860
     caacttagta tcagttgtgg acacaccaac aagagtaaca tccagttcca gtaccttaat      1920
     agataatgta tttttagata aggatattta caataatata actgtcaaaa ttattgttaa      1980
     tggcctctct gaccatgatg gacagttcct cactctaaac aaataaatgt acaaagaaaa      2040
     tcaaatttca tatggaaaaa ctttagaatt atagacagac acaccataga aagctttaag      2100
     cataaattac agcttgtgga ctggtctcct gtatatacca cagctgatgt taactcaaaa      2160
     tttaatatat ttagcaatga agttacaagc ctatttgagg aaacatttcc taaaaagttw      2220
     stgagagaaa accttttaaa atcaggaaac aagccttggc ttactaaagg catcaaaatt      2280
     tcctgcaaaa caaggaaaga actatatgct gaagccaaga gatcaaatga tcccagtaga      2340
     attaggcatt ataaactcta taataaaatt ctgaataaga ccatacaagc agcaaagaac      2400
     atgtgcttga aggtagacat tgataactca agcaataaag ttaaaactat ttggaacttt      2460
     gtaaagaaag aaacagggaa aaatgcaggt tgtagtgaaa ctatccacat aaaaagtgag      2520
     ggccaccttg ttagtgatcc aaagaaagtt gcagacacat tcaacaaaca ttttctaaca      2580
     gtaacagaaa aaataggttt acaaggttcc atgaaccaag ccatgaattt tttgaaagcc      2640
     aaagtaccta tcacaataca acagatgaaa gtaaaaacag tcactgttaa gaaatagaaa      2700
     aaattattaa atccctaaaa agtaaaaact ctactggagt tgataatatc tctaacaaat      2760
     tattaaaata ctgctgcagc caagtaagta aagtcctttg ccacattttt gatgcatcac      2820
     ttaagcaagg aacagttcct gaaaggctta agtatgcagc tgtgaaaccg ctatacaaaa      2880
     aaggtgataa gacagataca gctaactatc ggccaatatc actattgaca agtttttcaa      2940
     aggttttaga gaaactatgc atgcgaggat agttaagcat ctcagtaaac acaatatcat      3000
     cagcaaaagt cagtttggat ttcaggaagg tttgtcaaca gaagatgcaa tatttgcttt      3060
     tgctggcaaa gtcttggact ccatcaataa gaaactgaag gtggctggca tattttgtga      3120
     cctaacaaaa gctttgactg tgtcagtcac caaattcttt tacaaaaagc tgcacatctc      3180
     ggcataagtg gttcagcagg gaaatggctt gactcatacc tatcaaacag gaaacagaaa      3240
     gttgtgctgg atagtgaagc tggtgtccca atatcatcag aatggggtac catcacatgt      3300
     ggagtgcctc agggctcagt tctgggcccc ctacttttta ttatctttat aaatgacctg      3360
     cctctctgta cagaatactg tagattcacc atttttgctg atgacaccac ctctattgat      3420
     aattcagtga taaactagag gtaacagcaa atagttttga tgaataataa atggttttgg      3480
     taatggtctt ctttaaatca caatctaaaa caaactacat tcagttccac acaaatctac      3540
     ctaagagaag aaattgagta aaaataggtg accaattatt accagggtgg atgcatcaaa      3600
     gtacctaggc ttgcatattg atagcagact gaactggtca aaccacatcc tagatctatg      3660
     caaaagattg agttcagcaa catatgctta cgcattgttt cttcttacag gaatatggaa      3720
     acaatgaaag cctattatgg ttactttcat gccattatgg ctatggaatt atttttgggg      3780
     aaaccagcca tagctaaaaa agtactgtgt atgcagaaaa gggccataag aatcatgtgt      3840
     ggagtcacct agagccacat gcaggaatct ttttaaggaa ctcgaaatcc tcacatgcac      3900
     tgcacaatac atttctcttg atgtgcttca taagaaaaga taatcaattt ttaagcctaa      3960
     tagtgcatat catagttatg ataccagaag gaaacatgat atccactatg aacaggcaaa      4020
     cctaacatga tacagaaagg agtccatttc agtggctgta aaatttttaa tgcactcccc      4080
     tcaagaatta aatgtttggt agaagatgag cccatgttta aaaaaactga ggagtcctat      4140
     tcaaggacat tttactcaat agatgagttt cttaactaca atacttagta ttttcatgta      4200
     taatgtaaac tgtaaataca tgcacaaatc aatagttgta atcattattt ttattgtaaa      4260
     tgttctatta tacttattta ctgtaactat tgttggcttg taattttgtt tatcgtgatt      4320
     ttttcttgtg gtagaatcta gtaactgtat atgtaaaaaa ttttgtttga tttatgtgtt      4380
     acataaactg tacaaacaac tgtaaaattg acacattcca tatcctgtga ttagtcacaa      4440
     catggatccg gaacagaaat aaataaataa                                       4470
//
ID   Daphne-11_LMi repbase;    DNA;    INV; 3589 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3589
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3125-3125 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1182..1379,1334..1819,1804..2040,1959..2945)
FT                 /product="Daphne-11_LMi_1p"
FT                 /translation="MRKISKNSNYAFGRLTGGVFILQMMLTQNIIYLLMNY
FT                 QVYLKVSSPKKVCRXQDRQSGKNHGSPRAXTGQAIRQKPWLTKGIKISCQR
FT                 KRELYIISRESNNPXQLNYYRAYCKILTKVIKKSKXMCIESEINCSNNKIR
FT                 TIWNVIKRETGTSPSDNVKTAVLKINDSEIVDSKQIADTFNNHFLTVTSQI
FT                 GCSGNLSEAVDNLKHNLPKNFNDINVPPITVNEIKKKKNKKKKIIHSLKCK
FT                 RSSGIDNISSKLLKACSNEVSAVFAHICNTSLYEGIVPERMKYAIVRPLYK
FT                 SGDATDVTNYRPVLFEDEICHCETSLQVWRCYRCHKLSPCSLLTTFSKVLE
FT                 KAVYNRIVAHLDSLNIINHRQFGFQKGVSTERAIYSLTNDVLESINSKKSP
FT                 VGVFCDLSKAFDCVNHKILLEKAYHYGIKGPIGNWLKSYLEDRKQKVVLPG
FT                 CNNGSSNTVASEWGEIQHGVPQGSVLGPLLFLIYVNDLPLSISKKCQFTMF
FT                 ADDTSIVVDSKSVTDLETDLNDILKEVTAWFSVNSLSVNIKKTNFIQFHTK
FT                 HKNPENIVVVHDNQVLEQVHSTKFLGVHIDSRLNWEHHVSLTLKRLSSATF
FT                 ALRIITHFGDITTLKSAYFGYFHSLMSYGIIFWGNSPA"
XX
SQ   Sequence 3589 BP; 1264 A; 663 C; 637 G; 1020 T; 5 other;
     cagcaccagc ggttacaact caagtaaaaa gttagttcag taccagcttg tggagcacac        60
     acattcaagg aggaagaatg gtcatcagta gcagagacag caacacaact ccccaggatc       120
     aagagtatca gctgaaattg tagaaacctt gccacagaag atccacccct attgcacaaa       180
     ggagctcaga gtgacagcag ctacccacat aggatgtgcc tgagaccaag aaaatcttca       240
     attcaaaatg tggatttttt atggtattgg ggcagaaggg ggaaggttcc aatcagtatg       300
     taagtaggcc tactacagtc cattccaata aatgccagtg ttaccagcac agcagctccc       360
     cttcccttgc agaawattgt tcctgtaata ctagtatgtc aaaagagata aagctcagtc       420
     ccaacagtga cagcaccaca accaattgtg ttagtaataa gctcacaatt ttccaccaaa       480
     atattcaaag cctgttctgc aagctagacc aacttattgt aaatattgat gaaccaacag       540
     gtgcaaattg tgctcacatt ctctgcctaa cagaacacca tgttactgtt ggcactgaaa       600
     tgctcaatat tccaaactat gtattagcta cctcatattg tagaaagcat atgagcagag       660
     gtggggcagc tatctatgtg aaaaaccacc tgtcctttaa tacaatagat gtacagaaat       720
     attgtgtgga gaaacacttt gaggcatgtg ttactgaaat tggaggaact gacaagaaat       780
     tggcaattgt tgcagtgtac agggccccat ctggtaattt taaagtgttt atgaaacaat       840
     tagattctgt gctattgtat ctctcaagga aaaataggga cattatagtg acaggagact       900
     ttaatgtaga tttcctggaa aactcatctt ctaaggcaga atttkcaaac ttaatgcaca       960
     cctacaatct tgtctccact gtcagttttc ccacaagaac tactgccact tccagcactc      1020
     taattgacaa tatctttgta gatatgagta gaactcatca catcacagta gaaaaagtca      1080
     taaatggtct ctctgatcat gatgggcaaa tactcaccat taacaacttt aatgcacttc      1140
     agagtaaagc tgtgcacagt ggaaaaccgt tagaaacatg aatgaggaaa atatccaaaa      1200
     attcaaatta tgcattcggg agactgactg gaggtgtgtt tatcttgcag atgatgctaa      1260
     cacaaaatat aatttattta ctgatgaatt atcaggtata tttgaaagtg tcttccccaa      1320
     aaaaggtctg tagastacag gacaggcaat caggcaaaaa ccatggctca ccaagggcat      1380
     aaaaatatca tgccagagaa aaagagaact gtatataata tccagagaat ctaataatcc      1440
     tcwccagttg aactactata gggcatactg taaaatttta actaaagtaa ttaaaaaatc      1500
     aaagwgtatg tgcatagaat ctgaaattaa ttgttcaaat aataaaatca gaacgatttg      1560
     gaatgtaata aagagggaaa caggaacttc accatctgac aatgtaaaaa ctgctgtcct      1620
     aaaaattaat gattcagaaa tagttgatag taaacagata gcagacacat ttaacaacca      1680
     ctttttaact gtcacttctc aaataggttg cagtggtaac ctaagtgaag ctgtagataa      1740
     tctgaagcat aacctcccaa aaaattttaa tgatataaat gtaccaccca taactgtcaa      1800
     tgaaataaaa aaaaaaaaat aattcactca ttgaaatgta aaagatcttc aggcatagat      1860
     aacatctcta gtaaactgtt aaaagcttgc agtaatgaag taagtgcagt atttgctcac      1920
     atttgtaaca catctcttta tgaaggaatt gttcctgaga ggatgaaata tgccattgtg      1980
     agacctcttt acaagtctgg cgatgctaca gatgtcacaa attatcgccc tgttctcttt      2040
     taactacatt ttcaaaagtt cttgaaaaag ctgtgtataa taggattgtg gcacatcttg      2100
     atagccttaa tattattaac catagacagt ttggtttcca aaaaggggtt tcgacagagc      2160
     gtgccatata ctcactcaca aatgatgtct tggagtctat taacagtaag aagtcaccag      2220
     ttggtgtctt ctgtgatctt tccaaggcgt ttgattgtgt aaaccacaag atactcttag      2280
     agaaagccta tcattacgga atcaaagggc ctataggtaa ctggctaaaa tcatatcttg      2340
     aagacaggaa acaaaaggtg gtcttacctg gctgcaacaa tggatcttcc aatacagtgg      2400
     cttctgaatg gggagaaata cagcatggag ttccccaggg atctgtcctt gggcccttgc      2460
     tgtttttaat atatgttaat gatctacccc tgtccattag taagaaatgt caattcacaa      2520
     tgtttgctga tgatacaagc attgtggtag atagtaagtc tgtcactgat ttagagactg      2580
     atcttaatga tatactgaaa gaagttacag cttggttttc agttaattct ctttcagtta      2640
     atattaaaaa aactaatttt attcagttcc acacaaaaca taaaaatcca gaaaatattg      2700
     tcgttgtaca tgacaaccag gtactagaac aggtgcactc caccaaattc ctaggggttc      2760
     acattgacag taggctcaac tgggaacatc atgtgtccct gactctaaaa aggctttcat      2820
     cagcaacttt cgctctaaga ataatcactc attttggaga catcaccact ttaaaatcag      2880
     cttactttgg atactttcac tcattaatga gttatggcat aatcttctgg ggtaattcac      2940
     cagcctaaaa aaaaatctta atagctcaga agagagcagt cagaatcatg tgtggggttc      3000
     ctccacgaac ctcatgcaga aaacttttca tacattagga atctgacaac aatgtcagta      3060
     catatactct ctgatgaatt ttgtcattaa aaaccagctg agtatgaaac caattgttca      3120
     atccacaata taatactaga ggtaaagaga tctccatttg aactaaagaa attgtcactt      3180
     gtgcagaagg gagtgaagta tgctgccatt aagattttta atgcactgcc taattatatt      3240
     aaaagtaaac gagaaaatga aacgttgttc aaatgtacgt taaagaaata cctgcttgac      3300
     catccactgt actccttaga gaattcttct ccataaataa tgcacttctt caataaaaaa      3360
     gtatattgtt attagttatt agatgatgta caacactatg tcaatctaaa tagtgattac      3420
     aatactagtt aaatgttagc agtaaataat aaaatttgta catatcaata tttatattat      3480
     tgtactatat tataattctg tagcatttat tgtattgaca cgttccacat ccaagcgaat      3540
     cactcgcatg tacggatcca tggaacagaa tgacaaataa ataaataaa                  3589
//
ID   Daphne-12_LMi repbase;    DNA;    INV; 4377 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4377
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3126-3126 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1044..1271,1243..1749,1649..2305,2309..3526,
FT                 3481..3939,3855..4187)
FT                 /product="Daphne-12_LMi_1p"
FT                 /translation="MLIKLLQKDDHTTRQPIAIQSVSTKDTQKCQNNPKRR
FT                 KLCQLSLKIRLHHGWKKNLHQYQPQQIPLKKTRPNRRNERRQGPTEETSSE
FT                 VSDKIMTPFLKILKKKKRFKAVLFSVPSKHPVHKNKVQQLEVELQTLNSSL
FT                 VCITEHWCKGHELTHVALKSYVLASHYSRTTLQCGGSCIYVKEGIVFKVRD
FT                 DIIALSEDKHIEISAIEISKLNVLKRLTVLCIYHAPSGDMDTFIAKLNTSI
FT                 GHGLMYSKDSLYYVFTMLPVVTWILLLQSLTQALDMVSKPKGRILICGDLN
FT                 INTLNADGTCITFLNTLHSYNISPLINTATRITKNSASCIDHMLTDIEKDM
FT                 CNVVVDHLGISDHSSQFLKVNINVETNTKLLKYIRVFSESKRSVFASQLAS
FT                 ESWAEVYRESTVNGKFSKFLSIFKFKSEEVFPKVLRVIKAQNKNNWVTNGI
FT                 RQSSKTLRHLSTIKNYNNTIQNFYNTYKKVYRKVLLAAKRYQNDKLIEKAN
FT                 NKIKAAWDVTNRVTNRKKAGQINIQFQLNGTSVNDPKKLANFANKYFSNVA
FT                 TKLQQKFVNNTQHPHTLNNVPHTMFLQPSTAEEVSKVVQNLKSKSSAGIDE
FT                 IPVCLLKDCTQSISHPLAHIINESFTKGCFPETLKHAKVLPIHKKGDPESI
FT                 ESIENYRPISLLSSFSKVMETIMKNRLMAYLTKYNLLCKEQSGFRSGKSTS
FT                 SAIAQFTNAVLEALDKGDHVTGIFLDLTKAFDTVDHTILLNKLEALGVRGV
FT                 ANMWFHSYLQNRVQQVEITKTNSNHTIKHLSEPEYINIGVPQGSVLGPILF
FT                 LIYINDFPQSVKHGKSVLFADDSNILITDNSQIKLNQKAEDTLVHVSRWVE
FT                 NNKLTLNVKKTTASTSTQINPQCKKNNSINFHIKRKPVTNFLKIKDENIEC
FT                 VSTTKFLGMHIDSQLKWTEHITVLGKKIASACYALRIINSVCSSSCTRTAY
FT                 FANIHSLISYGIIFWGTNEQNRQAIFKLQKRAVRIMTNSSSRAHCTELFKY
FT                 MGILTVPCEYILQQSSTLEGPLYRIIQIYGNTNCSMRIHFTAVIYIKENIN
FT                 QYPPNSSIHEHETRSSRHLHLNRKNTTKTQNSILYNGIKLYNRLPQDIKNK
FT                 DKIQDFRNSLKKFLEKCYYTVQDYLN"
XX
SQ   Sequence 4377 BP; 1708 A; 822 C; 754 G; 1089 T; 4 other;
     caagatggcg ccaggtggaa agtactcacg taacgacgag atttcatagt gacgtgtgta        60
     aaatctgcga aaaaaagtta aaagaggtat cgtatgtgtt gactgcaagt cttggtatca       120
     tgataaatgt gtaaaagtaa atctaaatac ataaaagaga tcatgactgg catgccggca       180
     gtgcattgtg aatgccacga aaagtgaact agtgaataca ctaaagtcaa aagaagaaat       240
     aatacgtgtg ctgacagacg atttagtggc tataaatgca aaacaccaag aacttctgaa       300
     taaatatcaa gaactagtaa cgaaacacaa agaagtggag caaaatcatt gccaagaaca       360
     agaaaatatt attgttaatg gacgttctgt gcgactaagg tggcatgtac caaataaaaa       420
     mtgcaaacaa atgataagtg cagctccggc gttaatgctt tcaaataaat tgccggtata       480
     gaagattttg gctctgaaac agaagtcgcg aacgatctcc agtgacaaat taccatcaga       540
     atgcagtaca agaaatcgaa ttctattgca aaacgtgaaa aaacgggttc tgatactggt       600
     gacagccaca ccaggaaaat ttccgagaaa ataaatgaat ataacacact ttctatggcc       660
     acaggaataa caaagccgag tgcgcctcta tgtgagatac tgagaaacag taactcagtc       720
     tgtgactcac taataatgat tttgtcatta tcatgggagg cagaatgatg tctatcgaaa       780
     tgagagtaaa aatkccacac ggtgtttaaa atctacactg cgtgatctta aagtgccaaa       840
     atcatagtta ctagcatgcc tcacagatat gacctgcaag aaaactcaat tgtaaatatg       900
     gaacttgcaa aaataaacag acaattccac aaaatgtgca agtccttcca aaacktaacg       960
     ttctgtgagc ttccaaattc aagagatcta ttcacaaaac atggacaaca ctasaacacg      1020
     ctgggaagtc atacattggt aaaatgttaa taaaactact tcaaaaagac gatcacacta      1080
     caaggcaacc aattgctatc caatcagttt caaccaaaga tactcaaaaa tgccaaaaca      1140
     acccaaaacg aagaaaattg tgccagctca gcctaaaaat taggctacat cacggctgga      1200
     agaagaatct acatcagtat cagccccagc aaattccact aaagaagaca aggcccaaca      1260
     gaagaaacga gtagtgaagt gagtgacaag ataatgacac cttttctcaa aattttaaaa      1320
     aaaaaaaaaa gattcaaagc agtgcttttc agtgttccat caaaacaccc agtccataag      1380
     aataaagtgc aacaactaga agtggaactg cagactttaa acagctcact tgtttgcata      1440
     acagaacact ggtgtaaggg acatgaacta acacatgttg cactaaagtc atatgttcta      1500
     gcaagtcatt atagtagaac cactttgcaa tgtggaggat catgcatata tgtaaaggaa      1560
     gggattgtgt ttaaagttag ggatgacatt atagcattaa gtgaagacaa acatatagaa      1620
     atttcagcta tagaaataag taaattaaat gtactcaaaa gactcactgt attatgtatt      1680
     taccatgctc ccagtggtga catggatact tttattgcaa agcttaacac aagcattgga      1740
     catggtctct aaacccaaag gcagaatcct catctgtgga gatttaaata tcaacacatt      1800
     gaatgctgat gggacatgta tcactttctt aaacacctta cacagctata atatatcacc      1860
     attgattaac actgccacaa ggataacaaa aaattcagca tcatgcattg accacatgct      1920
     aacagatatt gaaaaagata tgtgcaatgt tgttgtagat catcttggta tctctgacca      1980
     ttccagtcag tttctaaaag taaacataaa tgtagaaacc aacaccaaac ttctcaagta      2040
     cattagggtt ttctccgagt caaaaagatc cgtatttgcc tcacagcttg ccagtgaatc      2100
     atgggcagaa gtgtacagag agtccacagt gaatgggaag ttttcaaagt ttctatcaat      2160
     atttaaattt aaatctgaag aagtgtttcc taaagtacta agagtaatta aagcacaaaa      2220
     taagaataac tgggttacta atgggataag gcaatcctca aaaaccctta gacatctcag      2280
     caccataaaa aactacaaca acacctgaat tcaaaacttt tataatacat acaaaaaggt      2340
     atatagaaaa gtactactag cagcaaaaag gtatcaaaat gacaaactca tagaaaaagc      2400
     taataataag atcaaagcag cctgggatgt caccaatcgg gtgacaaaca ggaaaaaagc      2460
     agggcaaata aatatacagt ttcaacttaa tggtacctca gtaaatgacc ccaaaaaact      2520
     agctaacttt gcaaataaat atttcagcaa tgttgctacc aaacttcaac agaaatttgt      2580
     caacaacaca cagcacccac atacactgaa caatgtacca cacacaatgt tcttgcaacc      2640
     ctccacagca gaagaagtta gcaaagtagt gcagaacctt aaaagtaaat cttcagcagg      2700
     catagacgaa atccctgtgt gcttactgaa ggactgcact cagagcatca gtcacccttt      2760
     agcgcacatc ataaatgaat cctttaccaa aggttgtttc ccggagacac taaaacatgc      2820
     aaaagtcctg cctatacata agaaaggtga cccagaaagt atagaaagta tagaaaatta      2880
     cagacccatc tctttactct catcattttc caaagttatg gaaacaataa tgaaaaatcg      2940
     gctcatggcg tatttaacaa agtataatct cctgtgtaaa gaacagtcag gtttcaggtc      3000
     gggcaaaagc acaagttcag ctatagctca gtttacaaat gctgtacttg aagcactgga      3060
     caaaggagac catgtaacag gcatctttct tgatcttacc aaagcctttg atacagttga      3120
     ccacactatt ttgttaaata aactggaggc actaggtgta aggggggtag caaacatgtg      3180
     gtttcactcg tatctccaaa acagagtgca acaggtggag atcactaaaa ctaactcaaa      3240
     tcacaccata aaacaccttt ctgagccaga atatatcaac ataggtgtcc cccaaggaag      3300
     tgtcctggga ccaatcctgt ttttaatata tattaatgat tttcctcaga gcgtgaaaca      3360
     tggcaaatca gtactgtttg ccgatgacag taatatatta atcacagata attcacaaat      3420
     taaactcaat cagaaagctg aggatacact cgtgcatgta agtaggtggg tagaaaataa      3480
     caaattaacc ctcaatgtaa aaaaaacaac agcatcaact tccacataaa aagaaaaccg      3540
     gtcactaact ttctaaaaat aaaagatgaa aatattgaat gtgtatcaac aacaaaattt      3600
     cttggaatgc acattgattc acaattaaag tggaccgaac acattactgt tctcgggaag      3660
     aaaatagcct cagcttgcta tgcgctcaga ataataaatt cagtgtgtag cagctcatgt      3720
     actaggacag catattttgc gaatatacat tcattaatta gttatggcat tatcttctgg      3780
     ggaacaaatg aacaaaatag gcaggcaata ttcaagctac aaaaaagggc tgtacggatc      3840
     atgacaaaca gtagctcgag ggcccactgt acagaattat tcaaatatat gggaatacta      3900
     actgttccat gcgaatacat tttacagcag tcatctacat aaaggaaaac atcaaccagt      3960
     acccaccaaa cagctccata catgaacatg aaaccagatc cagccgccac ctacatctca      4020
     atagaaaaaa cacaacaaaa acccaaaata gtatattata taatggaata aaactatata      4080
     acagacttcc tcaggatata aaaaataaag ataaaataca ggacttcaga aattccctaa      4140
     aaaaattttt agagaaatgc tactatactg tccaggacta cctaaattaa gatgcaaatg      4200
     tatgttgtca attatcatca gcagtgatat gaacatgtaa atttactaaa tataatattt      4260
     tatttgtctg taagtgtaga tgatgtactt aagattttat gtttgtattg tatacaaata      4320
     tgatgacaac atccatacaa tttttattgt atacggatgg ataaataaat aaataaa         4377
//
ID   Daphne-13_LMi repbase;    DNA;    INV; 4184 BP.
XX
AC   .
XX
DT   14-APR-2014 (Rel. 19.11, Created)
DT   14-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4184
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3127-3127 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(601..654,609..1115,1061..2083,2041..2406,
FT                 2340..2783,2832..3149,3110..3352,3277..3486,
FT                 3441..3776,3780..4070)
FT                 /product="Daphne-13_LMi_1p"
FT                 /translation="MIKKNVWFQTVKSMCVQEKKRVVPDCEIDVRPGIRTN
FT                 QLNNHFKNIQQAKHNSKNVTNSENYKGVFIHVGTNSLRSCSEEDLVNETRN
FT                 VIRSAKNIYPYSRIIISSILRRRSVSDKYIDKINCNIRDQCNRLGAIFVDS
FT                 NKFIRDDCIGQDGLHLNRLGSATFSKMFIDLCKIIRNRGNWQSVRGVNPVQ
FT                 NYTKQGKLAVSEGGELKHVVDKDTTKEDVLKTVNRYNSSFLMHWNIHGLRA
FT                 TYLQNKIAKIDELQIILSEGRNIKVVCLNEHWITEDSITVLNKLENFNVAS
FT                 SFCRKNKTHGGSCILINSSLEYKERDDFNFLNEELIFESCCVELEQQNIVI
FT                 ISIYRIPGNDVTKLFFDKFQCLLQKLTKEMRKKIIIAADFNIDTASETSIS
FT                 TKFNDLIQQYGFRLNFTEFTRVSDKSATCIDNILTNYTLNENAKFTLNLGI
FT                 SDHYALLMELLKTNKENGRKCFLKRQFNPDNIHLFCCRLNDIDWSLQHESS
FT                 CSENFDRFLNSFLHVFNETFPPMSAKERQQVSNISTHVCQRKTTSKLKWIT
FT                 TGIKISSKRKRELHAELKSNKSPEFIKYVKSYKKLFRKVVKAAKEMANTKF
FT                 IRKHKNKSKAVWTVVKSELGIKPSNQEISKLKIQDKIIVNPAQISETLMNF
FT                 STKNTRQNNCKSCSDIRNFNEFFITVAKSDVNVPSYQDNVHLFGSSLSKNE
FT                 CLIKFDTVTVEDVEKTILNLKNKNSVGWDEIPSKVIKAASNIIAYPLCKII
FT                 NQSLEEGYFPDSLKYAEVKPLFKKGSKEDMGNYRPISSFPCFPKYLKYQKQ
FT                 FGFQKGKSTIYAINEFVNKVTSTLDKSQKAAGIFCDLSKAFDSVNHSLLLY
FT                 KMEKYGIMGTALQWCTSYLTERKQRVVITSSKGKYSSKWRLSHRGYHKAQF
FT                 VETIPQGVPQGSILGPILFLFYINDLPININYHSVLFADDTSVLIENKKAD
FT                 EIPDNVLKTLENLDVWFHLNGLKLNIKKLRCLKDPRKPRCLVPSKWSKIKY
FT                 KKTQVMQFKTKQSKLNDIQIKHNSQELHEADHVKFLGMKLDRIYPGPHTIL
FT                 GNETGQNLSWSSHIDYLKNKLNSLAFAMSILANVTSLDTRKIVYRSYFESI
FT                 VRYGIIFWGNASTMIRILTLQKKIIETCGAKPRESCRPLLRDLNILSVPSL
FT                 YLFEIILSIIIQNYFFIITSSTVMKQEQRQFHAPTHRLNLYAQAPQYMGMK
FT                 ICNKLKNTHFRKVETESMKRKLYSTLVQKCYYSIDEFLNDDLSIEQDKTYN
FT                 YVL"
XX
SQ   Sequence 4184 BP; 1622 A; 688 C; 740 G; 1131 T; 3 other;
     caagatggcg tcaaaagttc agtgcagtga cacttcgatc tcctcaaaga agcagttata        60
     caactcttct gcttgtaaaa agtgcgataa acgcgtaata aaaggtattc tgtgcgtcac       120
     atgcaaattt tggatgcatg aaagatgtgc taaagtgaac cttaagttcg taaatgacga       180
     gttkccatgg tcgtgtggcg aatgtttatg tgatgaacgg aatgaactgt taaacacaat       240
     aaactcgaaa aatgaaatca tcaagatact aaataatgac gttgaagaac ttaaaaaggt       300
     aatagttgcg ttgaaagaag aaaatgcgaa acttgcaagt gatggaaata cacaaaagtg       360
     cgaaaagaat gtatcactgt gtggaaaaaa ccaagaaaat ccaagtgttt ctaattctgg       420
     aaatgatgca acagtaaaca aatcgggtag gcctagcgtg gaaaagtgac aaacaatgcc       480
     acttatgcgg atacaacaaa ccaatacaaa tggactgtcg tacagcacaa aaagagggac       540
     aagcaggaaa agaaagaaaa agagaacact aaaaacgact tcttaataat cggtgattcc       600
     atgattaaaa aaaacgtgtg gttccagact gtgaaatcga tgtgcgtcca ggaataagaa       660
     cgaatcagct aaataatcac ttcaagaaca ttcaacaggc gaagcacaac tcaaaaaacg       720
     taaccaacag tgaaaactac aaaggcgttt tcatacacgt cggcacaaac tcactccgaa       780
     gttgcagcga agaggacttg gtcaacgaaa cgcggaatgt tattcgatcg gcgaaaaata       840
     tctacccgta ttcaagaatt ataataagca gcatattgcg cagaagatcg gtgagtgaca       900
     aatatataga caaaataaac tgcaacatcc gtgatcagtg taacagacta ggwgcaatat       960
     ttgtagactc aaacaagttt attagagatg attgtatagg gcaggatggc ttacatctaa      1020
     ataggctggg ctccgcaact ttcagcaaaa tgtttattga cctgtgcaaa attatacgaa      1080
     acaggggaaa ctggcagtca gtgagggggg tgaactaaaa catgtagtag acaaagatac      1140
     aacaaaggaa gacgtgttga aaacagtaaa taggtataat tcgtcgttct taatgcactg      1200
     gaacattcat ggcctgcgtg ccacctatct acagaataaa attgcaaaaa ttgacgagct      1260
     gcaaattatt ctttccgaag gtagaaacat caaagtcgtt tgcttaaacg aacattggat      1320
     cacagaagac tctatcacag ttctaaataa attagaaaac tttaatgtag ctagtagttt      1380
     ttgtagaaaa aacaaaactc atggaggctc ctgtattctg attaacagct cgctagaata      1440
     taaggaaaga gatgatttta attttcttaa cgaagaactt atatttgaaa gttgctgtgt      1500
     agagcttgaa caacaaaata ttgttattat ctctatatat aggattccag gtaatgatgt      1560
     gaccaaatta ttttttgaca aattccaatg tctcctacaa aaactcacga aagaaatgag      1620
     gaaaaaaatt ataattgctg ctgatttcaa tatagataca gcaagtgaaa caagcatttc      1680
     aacgaagttt aatgacttaa ttcaacaata tggctttaga ttaaatttca ctgaattcac      1740
     cagggtaagt gataaatcag caacttgcat agacaacatm ttaacaaatt atacattaaa      1800
     tgagaatgcc aaattcactt taaacctagg catctcagat cactatgctc tgcttatgga      1860
     gttattaaaa acaaacaaag aaaatgggag gaaatgtttc ctgaaaagac aatttaatcc      1920
     agacaacata cacttattct gttgtagatt aaatgatata gattggtcat tgcagcatga      1980
     aagttcatgt tcagaaaatt ttgataggtt cttgaatagt tttttgcatg ttttcaatga      2040
     aacatttcca cccatgtctg ccaaagaaag acaacaagta agctaaagtg gataaccact      2100
     ggcataaaaa tatcgagtaa aagaaagagg gagctacatg ccgagctgaa atccaataag      2160
     agtcctgaat tcattaaata tgttaaatct tataaaaaat tgtttaggaa ggtggtaaaa      2220
     gcagcaaagg aaatggcaaa tactaaattc atcagaaagc acaaaaataa atctaaggca      2280
     gtgtggacag ttgtcaaatc tgaacttgga atcaaaccga gcaaccaaga aatttctaaa      2340
     ctaaaaatac aagacaaaat aattgtaaat cctgctcaga tatcagaaac tttaatgaat      2400
     ttttcataac agtagcaaaa tctgatgtta atgttccctc atatcaagat aatgtacatc      2460
     tatttggctc tagtctgagc aaaaatgagt gtctaattaa atttgacaca gtaacagtag      2520
     aagatgtaga aaaaactata ttaaacctaa aaaataaaaa ttcagtggga tgggatgaaa      2580
     taccttcaaa ggtcattaaa gcagcttcaa atataatagc atatcctctg tgtaaaataa      2640
     ttaatcagtc acttgaagaa ggctactttc cagactccct aaaatatgcg gaagtgaaac      2700
     cattgtttaa aaaaggctct aaagaagata tgggaaatta ccgtccaatt tcctccttcc      2760
     cgtgttttcc aaaatatttg aaatgattgt tgcagttcaa attcaaaatt tctgtcacaa      2820
     atttaatata atatcaaaaa caatttggct ttcaaaaagg gaaaagtaca atctatgcta      2880
     tcaatgaatt tgtcaacaaa gttacttcca ccttagacaa atcacaaaaa gcagcaggaa      2940
     tattctgtga tctgtccaag gcgtttgaca gtgtgaacca ctccctatta ttatataaaa      3000
     tggaaaaata tggaattatg ggtactgccc tacagtggtg tacgtcatat ctaacagaga      3060
     ggaaacaaag ggttgtcata acatcgagca aaggaaaata ctcctctaag tggagactat      3120
     cccacagggg gtaccacaag gctcaattct aggcccaatc ctttttcttt tctatattaa      3180
     tgacttaccc ataaatataa attatcattc agttctattt gctgatgaca cgtcagtact      3240
     gattgaaaac aaaaaagcag acgaaattcc tgataatgtc ttaaagaccc tagaaaacct      3300
     agatgtctgg ttccatctaa atggtctaaa attaaatata aaaaaactca ggtaatgcag      3360
     tttaagacaa aacagtctaa attaaatgat atacagatca agcacaatag tcaggaacta      3420
     catgaagcag atcatgttaa attcttggga atgaaactgg acagaatcta tcctggtcct      3480
     cacacataga ctacctaaaa aacaaattaa acagccttgc atttgctatg tccatcctag      3540
     ccaatgtaac tagtttagac acaagaaaaa tagtgtaccg tagctatttt gagtcaattg      3600
     tgagatatgg catcatattt tggggaaatg ctagcactat gataagaata ttaaccctgc      3660
     agaaaaaaat tatagaaacg tgtggtgcaa agccaagaga atcctgtcgg ccattattaa      3720
     gagatctaaa tatactgagt gttccctcat tgtacttatt cgaaataatt ctttcataaa      3780
     taataatcca gaactatttc ttcataataa cttccagcac agttatgaaa caggaacaaa      3840
     gacagtttca tgctcctacg cacagactaa atctatatgc ccaggctcca caatatatgg      3900
     gaatgaaaat atgtaataaa ttaaaaaaca cacattttcg aaaggttgaa actgaatcaa      3960
     tgaaaagaaa attatacagc actctggtac aaaaatgcta ttattcaatt gatgaattct      4020
     taaatgatga tctgagtatt gagcaggata aaacatataa ttatgtactg tgattttata      4080
     actacattgt atgtatatat tattatttta aactgacgag tctcctgtac actaaatcaa      4140
     tgatttaact tgtatgttat gagacaataa aattctgatt ctga                       4184
//
ID   Daphne-14_LMi repbase;    DNA;    INV; 4885 BP.
XX
AC   .
XX
DT   14-APR-2014 (Rel. 19.11, Created)
DT   14-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4885
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3128-3128 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(917..1255,1216..1527,1431..2117,2059..4098)
FT                 /product="Daphne-14_LMi_1p"
FT                 /translation="LLKNHINSTEKQVVLSKLPLPSIQETGKEKPEXRKLK
FT                 ETTASRDNSELQCSSCNSTNTTSNAGTASRDDSEVAVPQIAAPQTVALRRS
FT                 TRQKKVVSGNDDNFLWPKLLSHKTSQFFVAKTPLSQDVIAVTNSTQTEECD
FT                 NLNIYCHNVQGLRNKVSELEILLSDSNVLSNMHLLCISEHSLKEFEIPYIF
FT                 PLFVVVLVYMYEPTSIVILSIPVKCTLDTLYLSFIRGGAGIYVRTNINCDP
FT                 FHPCEVYSIDKNIELAGVVLPDLNMNIICVYRSPNGNFSVFLKNFALLLEK
FT                 VCYKNSKIVIICGDFNIDFLEDSACRSQLLNLMMSFNLIVKVNSPTRLNSC
FT                 LDQVATNTDCTVRTIGVGFSDHSALTIHVKSPSNALPSEKITIKSRSYNDN
FT                 NINNFLLRLKKEEWQSVFTSSTTNEKFDNFLLRFQYYFNCHFPEKNKNYHQ
FT                 KDFNIILTAIFQKKTKTITKNKKNAWISKGIKTSSEQMKLLHKISKLDSGN
FT                 SEEFKAYYSRYKTIYRRVIKCAKKSHNDKIIRGSSNKCKTVWGIVNEQSGR
FT                 KMRVEPKVTINIEGHKTENVQKIVNKFNSYFSEISSNLLATSPNTVYSPPN
FT                 NFTPLKSFFLTPTTQCEVEDTIKKKIKKTHSAGHDLIPCFLLHKCANYISK
FT                 PLSNIINTSFLEGTFPCQLKLAKIIPLYKKGEKSDVSNYRPIAILSAFSKI
FT                 FEYCMSTRLEAFLKSSNIISCSQYGFRKNMSTTHALYAFLEKCSELVDHKQ
FT                 PAIGIFLDQSKAFDMVDHKLLLMKLQKYGIRGVAHSWFGSYLSERKQYVEI
FT                 KDPKTSRACRSDILHTRNGVPQGSILGPILFLLFINDLPEHIPDASSFLYA
FT                 DDTNILITGNVDILQDAINETTGQLHSWFEANRLLINTQKTVSMNFHTRQN
FT                 LTPCNAAVAIGKDSIANRQDTKFLGLTISNTLNWKPHIEALSQKLNKTCYL
FT                 LRSIRDTVSIDTLKLIYHALFESVLSYGLIFWGSSSESLVIFKIQKQVVRI
FT                 IALKKRFEHCKPLFKKLKILPLPCLYILEVACCTVQYLESLDRNADRHTHD
FT                 TRNKTHLQIIPHNTKLYANGAKYMGIKIHNHLPPDLKTIKNPKIMRIKLKE
FT                 LLLNHCFYSIQEFLETKF"
XX
SQ   Sequence 4885 BP; 1716 A; 968 C; 770 G; 1423 T; 8 other;
     ctgtgagaaa tagtttcgaa actttgtgta ggcccgcgcc gccagacgtc agaagaacaa        60
     gtacaagaac cgatcaccgg taccacttac aacataccag tgagaaattg tctcaagttt       120
     tgtgtaggcc tactgctcat aaacatagac aaaaattcaw atttgcaact gtgagcggaa       180
     gactttagcw gcatwgcagc tttcaaattc cgtccaataa gcaaaacaaa aggcctaaac       240
     agtgaaacag ttatgtgatw caaaacggaa aatctctgct gaaaatcgca acatctcagt       300
     ttgtttgata gccatggaag aggactagcg caaacgttaa ggtctgagaa actagcaaat       360
     gcaacgattt tgtaaaacca tccgcaagtt tgcgtgaaat caggaaaagt cgcacaaata       420
     accaagccta tcagtaggaa atgatgaata cactgtgtta ctagctgggg caaatgaagc       480
     aaaagaggcc actctgggct aatagaatac ctaaaagctt cagaaaattc taaaattatt       540
     gttgggaatt ccacacaggt atgacctaat ggatgagtaa tgtaaataag aaatagccaa       600
     aacaggcttt acaaaacatc tgtgctgcat ttcccaatgt aaactttgtg tccactgaaa       660
     atatgcctag ggaactattt accagccatg gacaacacct caatggaaag ggtaaatcat       720
     atatcastga atmatctgcc aagcaattaa tgctggaaac aaagaccaaa ttcctgtatt       780
     tacccccctt ccagcacctg atatcatggc tacacagtgc tctcaaatga ccaattcaag       840
     ttatgtaact acaactccaa tagaaaacat accttcattc aatctcaaga ctcttgcact       900
     gctgagagaa gcctaactcc taaaaaacca cattaactca acagaaaaac aagtagtgtt       960
     atcaaaactc ccactacctt caattcaaga aactggaaag gaaaaaccag agcwcaggaa      1020
     attaaaagaa actacagcat caagagacaa cagcgagttg cagtgctcaa gttgcaactc      1080
     cacaaacact acctcaaacg caggaacagc atcaagagac gacagtgaag ttgcagtgcc      1140
     tcaaattgca gctccacaaa cagtagccct gagaagatcc actaggcaaa aaaaagtagt      1200
     ttcaggtaac gatgacaatt ttttgtggcc aaaactcctc tctcacaaga cgtcatagca      1260
     gtcaccaata gcacccaaac tgaagaatgt gacaacctca acatwtattg tcacaacgtt      1320
     caaggactgc gaaacaaagt gagtgaactt gaaattctct tgtctgattc taatgttctg      1380
     tctaacatgc atctattgtg tattagtgaa cactcactaa aagagtttga gataccttat      1440
     atctttcctt tattcgtggt ggtgctggta tatatgtacg aaccaacatc aattgtgatc      1500
     ctttccatcc ctgtgaagtg tactctatag ataaaaacat tgaattagct ggggtagttc      1560
     ttccagactt aaatatgaac ataatttgtg tatatagatc acctaatggt aacttttctg      1620
     tcttccttaa aaactttgca ttattgttag aaaaagtatg ctacaagaac tcaaaaattg      1680
     taataatatg tggtgacttc aatattgatt tccttgaaga ttctgcttgt aggtctcaat      1740
     tactaaattt aatgatgtcc tttaatttaa ttgtaaaagt caattctcca acaagactaa      1800
     acagctgtct agaccaggta gccactaaca ctgactgcac tgtaaggact ataggggttg      1860
     gtttttcaga tcacagtgca cttacaattc atgttaaatc cccatctaat gcactcccat      1920
     cagaaaaaat tactattaag tccagaagct ataacgacaa taacataaat aactttctat      1980
     tgagattaaa aaaagaagaa tggcaaagtg tatttacttc atcaactact aatgaaaagt      2040
     ttgacaattt tctactgaga tttcaatatt attttaactg ccattttcca gaaaaaaaca      2100
     aaaactatca ccaaaaataa aaagaatgct tggatctcta aaggtattaa aacttcatca      2160
     gaacagatga aactgctaca caaaataagc aaattagata gtggtaattc tgaggagttc      2220
     aaggcgtact atagtcgcta caaaaccata tataggagag ttatcaaatg tgctaaaaag      2280
     tcccataatg ataaaataat tagaggttct tctaataaat gcaagaccgt ttggggcata      2340
     gtaaatgaac agtctggtag aaagatgagg gtagagccta aggttacaat caatatagaa      2400
     gggcataaga ctgaaaacgt acagaaaatt gtaaacaaat ttaacagtta tttttcagaa      2460
     atttcctcaa atctcctggc cacctctcct aatactgtat actcccctcc aaataacttt      2520
     actcctctga agtccttttt cctaactcct acaacacaat gtgaagttga agatactatt      2580
     aagaaaaaaa ttaaaaagac ccattctgca ggacatgact tgataccttg tttcctactt      2640
     cacaagtgtg caaactacat cagtaagccc ctttcaaaca tcataaatac ctcctttctg      2700
     gagggaacat ttccgtgcca gctaaaactt gctaaaatta tacctctata taagaaagga      2760
     gaaaaatctg atgtatcaaa ttatagacca attgctatac tatctgcttt ttcaaaaatc      2820
     tttgaatatt gtatgtctac aagattagaa gcatttttaa agtccagcaa tataatctct      2880
     tgttcccaat atggatttag gaaaaatatg tctaccacac atgctttgta tgcatttctg      2940
     gaaaagtgtt cagaacttgt tgaccataaa caacctgcta ttggcatatt cctagatcaa      3000
     tccaaggcat ttgacatggt tgaccacaag ctgctcctta tgaaactcca aaagtacggg      3060
     atcaggggtg tagcccacag ttggtttggt agctacctca gcgaaaggaa gcaatacgtc      3120
     gaaataaaag atccaaagac atccagggct tgcaggtcag atatactaca tacaaggaat      3180
     ggcgtgcctc aggggtctat tcttggccct atcctcttcc ttttgttcat caatgacctc      3240
     ccagaacaca tacctgatgc cagctccttt ctgtatgccg atgatacaaa tatcttgatt      3300
     accggtaatg tcgacatatt acaagatgca atcaatgaaa ccactggtca attacactct      3360
     tggtttgaag caaatagatt actcataaat acacagaaaa ctgtaagcat gaattttcac      3420
     acaagacaaa atcttacccc gtgtaatgca gcagtagcca ttggcaaaga ctccattgct      3480
     aacagacagg acaccaaatt tcttggactt accataagta atactctaaa ttggaaacca      3540
     cacattgagg ccttgtcaca gaaactcaac aaaacatgct acttactacg atcaatcaga      3600
     gatacagtca gtatagatac tttgaagctg atataccatg ccctgtttga gtccgttttg      3660
     agctatggct tgatcttctg gggaagtagt tctgaatccc ttgtaatttt caaaattcaa      3720
     aaacaagtgg ttagaataat agctttgaaa aaaagatttg aacactgcaa accactgttc      3780
     aaaaagctaa aaatactccc actcccatgt ctctatatac tggaagtggc ttgttgtaca      3840
     gtccaatatc tggaatccct cgacagaaat gctgaccgcc acacacatga cacaagaaat      3900
     aaaacccacc tgcagattat acctcacaac actaaactat atgctaatgg ggctaagtat      3960
     atgggcatca aaattcataa ccacctccct ccagacttaa aaacaatcaa aaatccaaaa      4020
     ataatgagaa ttaaattaaa ggaactatta ctaaatcact gcttctattc tattcaggaa      4080
     tttctggaga caaaattcta agttatatct gtgaactgat atgttatagc tataagattt      4140
     acacgtaatg tcttatttgt atgtactcta ctctgcaaca aagtttcctg tgctaaattg      4200
     aaacattaat ctattatggt aactttgcaa atcctgtgga ttacactttt actaatgtaa      4260
     tatgtttcag ctaaaagaat ttgcatacta aattatccat gataatttaa agaactacta      4320
     ttttctcctt ataaatatct tgattaattt aaacaagtac tgtacttctt ctgcttataa      4380
     ttattttgca tatatttttc tgccatgtga agtctgtaac tccatgccct tgtactaatg      4440
     taatatgtta tagctaaaag aatttgctac taaattatcc atgatatatt tttctgccat      4500
     gtgagctgta actccatgtt cttgtactaa tgtaatatgt tatagctaag agaatttgca      4560
     tactaaatta tccatgataa ttttaagaac taatattttc accttataga tattttcatt      4620
     aatttaaaca agtaccattc tttttctgct tataattatt tttgcatatt tctgcttata      4680
     attatttttg catatatttt tctgccatgt gaagtctgta actccatgtc cttagcctta      4740
     atttaatttt tatagcacca tttgccttat tgtacaaagt acaaaagtgt tttattctta      4800
     gtgacttgtc ctatatcatt gtgtgctcta ctgtacaaat gtttgatcta caggacaaat      4860
     aaaaccaaac taactaacta ctaac                                            4885
//
ID   Daphne-15_LMi repbase;    DNA;    INV; 4970 BP.
XX
AC   .
XX
DT   14-APR-2014 (Rel. 19.11, Created)
DT   14-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4970
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3129-3129 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(998..1567,1581..1799,1732..1950,1923..2063,
FT                 2057..2812,2802..3107,3047..4624)
FT                 /product="Daphne-15_LMi_1p"
FT                 /translation="MVIATGTNDVACNNSKDLITTLRSKLPSITSKKVFLV
FT                 DVPFRHDLPNWSIVNKEVKSTNSHIHKLCSKFSNVTLIKASKFHRDQYTRN
FT                 GFHLNNLGRNKIANFVIETMKKENSQRRPTIPLGYSELNITPTNSINHXQN
FT                 RNVRKSHQWKRSTTXLXEKDXAXDATXLKLTSTXRAAQTTEAVALIPVSXW
FT                 AHGNGSLDNIRRGNNRPXXKREENHNYSKRMSNAAGRRKQCLLRLNDFLMK
FT                 AERSPSQQCPVPSDLQSADLLSRQKEALLNSVQYLQICNQQIYFHNVQGLR
FT                 NKVSEIEILINSNSELANVQILCITEHHMCSSEIECVVYHSLNWMCCVPQF
FT                 KLVNHFSRKNFRGGGSCIFVKDNITALPLDICNFHSAEKDKRLELSGIELT
FT                 DFNIYLVSVYRSPSGNLSCFYNKLALVLEKLTKWKNFRIVICGDFNIDFLV
FT                 EDSDHLNFKNFMNLYNLELKVNSPTRITNHSKTCLDQVATDIDCTACSVKL
FT                 GFSDHNALFLQINVPESKPPLKKFSTQSRNYCESNVHTFLSHMQTENWYEV
FT                 YQSQTVDSKFEAFLNTFNYYFNYHFPLKTKSIRTNSKPSKWITTGIITSAK
FT                 RKRELFSLSKTEFGKTEEFKNYFTKYKKIFKNVVNAKLMQNDTLLKSSANK
FT                 SKCMWKIINTHSGRNQHLTSNVNLKINGKLTSNKKEIADEFNSYFIKSVES
FT                 LTDHLKNNHLPKLDPNNCTDTLFLTPTTEAEIEKYSNLHRHIVLNTNNRSR
FT                 DRKIFKLKLKKKEQDQIPCFLLHNCSKLISKPLSHIINSSFLNGIFPNKLK
FT                 TAKIIPIHKKGNRDDTSNYRPIAVLSVFSKIFEYTMADRLKSFLRKNNIIS
FT                 PAQFGFQGEKTTTDAIQKLLDHTLTLVDKKLPAIGIFLDLTKAFDMVNHNI
FT                 LLQKIYSYGIRGTGHDWFKSYLKDREQYVQINESNQSGIANAEQSSTQTIK
FT                 HGVPQGSVLGPLLFLLYVNDLPLSLPTDKTFLFADDTTVMISDSIDHLQGA
FT                 VNRSTTQLNSWLESNRLLLNIKKTVGITFHTVQNKNQSVPIISLSDDQVNF
FT                 VKETKFLGVTISDTLTWKSHINITCTKLSKICFMIRQIRNVVSTSTLTSMY
FT                 YALFHSVLSYGIIFWGHSAEAMKLFKLQKKAVRLILFKQQKESCKPLFQKL
FT                 NILPLPCQYILDLLCYTKKNIGNLDINSDWHHHDTRSKNSLRLVPHSTKLY
FT                 SKGVKCMGIKLYNHLPPEVKNIALVKDFRVKLRSLLIKHCFYSIQEFIETN
FT                 LS"
XX
SQ   Sequence 4970 BP; 1890 A; 994 C; 808 G; 1261 T; 17 other;
     catgkcgaat cttmgcmcgm tttacagtta tgtgttacaa cataaaaatg aagatggcgc        60
     cgatcggacc tgtaagtgta aattgcacga aagaaagtga cgaaaattaa gaaaaaagtg       120
     gtagtaactg taagtgtgtt gcaagaaagt aagaaaaggt attcagtgca actattgtaa       180
     atggtggttt cacgaaaatt gctgtaaaat taacataaaa ctgataactg tgggttactc       240
     atggtcgtgt gatgcttgtg tggcggaaat atgtgaaaaa aaaagtatat acacattatt       300
     aaagacaagg aagctataat tcaaatgctg caaagtgaca ttaacgcatt gcaaaataaa       360
     tgtgctatgc ttgaaaataa atgcaaaatg ccggaaaaca gctgcaatga ctgtttcaag       420
     gtaggcctaa acgaaaacga gtgttacaaa amtagtgaaa agtggcgctc caaatatgaa       480
     gacatcatga agaaatgata actagaagtg aacaaccctc agtttgtgta ttatgttcgc       540
     gtgattcgca agtagtcagt tatccaggtg accatgaaag caactccaaa agtgtgaaca       600
     gagatcgcga ttccagtgcc tcaaacatga aaataaagaa ccggtagcgt caaacatcac       660
     cagcagccta aaaggtaacg tgcaaacctc tcttccatca gagaaaaaca ctaatcaccc       720
     aagaaccagg gaatcaaccc ccacaaactc aaaattatcg atcgaaaatt ctcggaacaa       780
     agttgaagca gatacgaact ttcctgcaaa acaaaatttg tgtgacaaaa agcttaaagc       840
     gatcgtcttt ggagacagtc aagctcaaaa tgtttcaaaa tttcttaatg aagacgcaga       900
     ctttgaatgt ttaggttgtg tttaccccaa cgccaatgca agtcacgtcc tgaaacacat       960
     aaatcaaatc tctaaccaaa cgggcgctcc tgatattatg gtcattgcaa caggaacaaa      1020
     cgacgttgcc tgcaacaaca gtaaagatct tataactact ttaagaagca aactgcccag      1080
     cattacatca aaaaaagtct tcttagttga cgtgccattt agacatgatc tcccaaactg      1140
     gtcaattgtg aataaagaag taaaaagtac aaattcacat atacataaac tttgttctaa      1200
     attctcaaat gtcacactga taaaagccag caaatttcat agagatcagt acacacgaaa      1260
     tgggtttcac ctaaataact tgggcagaaa taaaattgca aatttcgtaa tagaaaccat      1320
     gaagaaagaa aactcacaaa ggaggcccac aatacctctt ggttatagtg aactgaacat      1380
     cacccctact aacagcataa accacmccca gaaccgaaat gtaaggaaaa gccatcagtg      1440
     gaaacgtagt acaacaamct tggawgaaaa ggatktcgct amagatgcaa cagmtttgaa      1500
     actaacatca acamaaaggg cagcacaaac aaccgaagca gtggcgctta taccagtatc      1560
     wscatggtaa mactacatag gcccacggaa acggaagtct cgacaacatc agacgaggga      1620
     acaacagacc casaascaaa agagaagaga accacaacta cagtaaaaga atgtcaaatg      1680
     ctgcaggtag acggaaacag tgcctcctcc ggctcaacga ttttttaatg aaggcagaaa      1740
     gaagcccttc tcaacagtgt ccagtacctt cagatttgca atcagcagat ttactttcat      1800
     aatgtgcaag gacttagaaa caaagtgagt gaaatagaaa tcttaataaa tagtaacagt      1860
     gaattagcaa atgtgcaaat actatgtatt actgagcacc atatgtgttc ttctgaaatt      1920
     gaatgtgttg tgtaccacag tttaaactgg tgaatcactt ctcaaggaaa aatttcaggg      1980
     gtggagggag ctgcatattt gtaaaagata atattactgc tctaccactg gacatatgca      2040
     actttcacag cgctgaaaaa gactagaatt atcaggcata gaactcactg actttaatat      2100
     ttatttagta tcagtttata gatcaccctc aggcaacttg agctgcttct ataacaaact      2160
     ggccttagta ctagagaaac taacaaaatg gaaaaacttc agaattgtta tttgtggtga      2220
     ttttaatata gatttcctag tagaagatag tgaccattta aacttcaaaa attttatgaa      2280
     tctttataac ctggaactaa aggttaactc tcctaccaga ataacaaacc acagtaaaac      2340
     ttgtctagac caagtagcta ctgacataga ttgcactgca tgttctgtaa agctaggttt      2400
     ttctgaccac aatgctctat tcttacaaat aaatgtgcca gaaagcaagc cccctctaaa      2460
     aaagttttca acacaaagta gaaactattg tgaaagcaat gtccacacct ttctgtccca      2520
     catgcaaaca gaaaactggt acgaagtata tcagtcccaa actgtagata gcaaatttga      2580
     ggcttttctc aatactttta attattactt caactaccat ttccccttaa aaacaaaaag      2640
     tattcgcact aacagtaaac cctctaagtg gataaccaca ggtattatta cctcagcaaa      2700
     aagaaaaaga gaacttttct ccctcagcaa gaccgaattt ggcaaaactg aagaatttaa      2760
     gaattacttc actaaatata aaaaaatctt taaaaatgta gttaatgcaa aatgataccc      2820
     ttctcaaatc atcagcaaac aaaagtaaat gcatgtggaa aattattaat acacacagtg      2880
     gtagaaatca gcatctgaca agtaatgtca acttaaaaat aaatgggaag ttaacctcaa      2940
     ataaaaaaga aatagcagat gaatttaact catatttcat taaatccgtt gaaagtctta      3000
     cagatcacct aaaaaataat cacctcccaa aacttgaccc aaataattgc accgacacat      3060
     tgttcttaac accaacaaca gaagcagaga tagaaaaata ttcaaactaa aattaaaaaa      3120
     aaaagaacaa gatcagatcc cttgcttcct tcttcataat tgtagcaagc ttattagtaa      3180
     accactgtcc cacataataa actcctcatt cctcaatggc atatttccaa acaaactcaa      3240
     aactgcaaaa atcataccca tacataaaaa aggaaataga gatgatacta gcaattaccg      3300
     gccaattgca gtactctcag tattcagcaa gatatttgaa tacacaatgg cagacagact      3360
     caagtcattc ctgaggaaaa ataatatcat atcacctgct cagtttggct tccaagggga      3420
     aaaaactaca accgatgcta tacagaaact cctagatcac actctaacac tagtggacaa      3480
     gaagcttcca gccataggca tttttcttga cttaacaaag gcctttgata tggttaacca      3540
     caatatactg ctgcaaaaaa tttactccta tggaataagg ggcaccggcc atgactggtt      3600
     taaaagctac ctcaaagacc gagaacaata tgtccaaata aatgaatcca atcaatcagg      3660
     cattgctaat gctgaacagt catctaccca aaccataaaa catggagttc cccaaggctc      3720
     agtgttaggg cccttgctgt tcttgcttta tgtaaatgac ctccccttaa gtttacccac      3780
     tgacaaaacc tttctctttg ctgatgacac cacagttatg atatctgact ctatagacca      3840
     tctccaaggt gcagtaaaca gaagcacaac ccaactaaac tcatggctag aatcaaacag      3900
     actactcctc aatataaaga agacagttgg tattaccttt cacacagttc agaataaaaa      3960
     ccaatcagtc ccaattatat cactgagtga cgatcaagta aatttcgtca aggaaaccaa      4020
     attcttaggg gttaccatct cagacacact tacatggaaa agccacatta acataacctg      4080
     taccaaattg agtaaaatat gttttatgat tagacaaata agaaacgttg ttagtaccag      4140
     cacactcaca tcaatgtact atgctctttt ccattctgta ctaagttatg gaattatctt      4200
     ctggggccat agtgcagagg caatgaagct gtttaaactc cagaaaaaag cagttagatt      4260
     aatactgttc aaacaacaga aagaatcatg caaaccattg ttccagaaac tgaacatact      4320
     acccctccca tgccagtaca tactagacct actgtgttac acgaagaaaa acattggcaa      4380
     cctagacata aactcagatt ggcaccacca cgatacaagg tcaaaaaact ccctacgatt      4440
     agttccacat tcaacaaagc tatacagtaa aggtgtaaaa tgtatgggaa taaaactgta      4500
     caatcatctc ccaccagaag tgaagaatat tgcactagtg aaggatttta gagtaaaact      4560
     gcggtcactc ctaattaaac attgcttcta cagcatacag gaatttattg aaaccaacct      4620
     gtcataagaa gcttcacatt caaagaacat caggcaatgt atgtcagtta ttaacatcat      4680
     tcgaaggaaa tgtaatataa atgaatgtaa aatgttaaat tctgatattg aataagtatg      4740
     agacctatgt aaaaattaca ctgcatcctc atctaatgat gtactcttcc aaacatgtaa      4800
     ttatgtataa ttttatagca ttaattttct accttatgtt aaatgtaatc atcatggcat      4860
     ctccatcatc ttccatcaca tcacctattc tgacttgtcc tatatcatga tgtgcatgtc      4920
     tgtacaatgt atgattcaga ggaccaaaag taaataaata aataaataaa                 4970
//
ID   Daphne-16_LMi repbase;    DNA;    INV; 4325 BP.
XX
AC   .
XX
DT   14-APR-2014 (Rel. 19.11, Created)
DT   14-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4325
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3130-3130 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(308..619,589..1269,1188..1565,1561..1677,
FT                 1671..1829,1786..2073,2046..2210,2207..2527,
FT                 2512..2901,2808..3320,3205..3777,3747..4160)
FT                 /product="Daphne-16_LMi_1p"
FT                 /translation="MENNGQPRVNSSNIITRGNNGQKCVNNSLASQSENNG
FT                 WKCTNSSNSVSEEKSKTVIGKVQCSKQNQINKSYLVCRNKFNVLSESSNMD
FT                 VNSESENKPTNVKLKTKQAYQCEAKDIKENRKSATSNKKLTAEKCNVLFLA
FT                 DSHGRKLASILGDVSTDLNTTGIIKPGTRTKNIIGDVSEFKTTMKNSDFVV
FT                 CITGSNDVAQNEAKKCITGLRNFLDANKTVNSLVVTIPQRHDLTYNSCVNK
FT                 EIRRTNVKIKQLCSSYAKCNVVDASRLNRNLHTQHGQHLNYHGKKFLCQEI
FT                 KNVINETRERNKFVLKDSPSVHAHVPPFLDKTMTQSKERVCSKRQSLCTCS
FT                 CPSFFRQNNDTKQGKVETMLIGNCNKLIQLDHCDDPEHVAKINEHTAHNEN
FT                 KIPSCIDGNILLLHINVQSLRSKMNELQYWLDRINCSVLCVNEHWMKACEI
FT                 DLCVPIGYLLTNPTSYCRKNIVCGGVSIYIKSNLDLQYSVIDLNMVCIEGT
FT                 RYIEVAGIVLHTQKIVIVSIYRTPGSDEIVFIEKINALILHLSKYKQQNCN
FT                 CRYYTCPNINNKIVIVGDINIDIRATRKNVVDMINSLKSLNYYCLNEKPTR
FT                 LNACLDNIISNVHRDLVQCDVIELGLSDHAGLWLQIDNQPLLPKKGKSTLV
FT                 TKERQVTYRLLGESNVSNMKNKLQEKDWSQIMNSNETVDKCFSIFLTEIST
FT                 HIVEKTCPMVTRRYTNTPRKLQHTNKWYTPQLNRLRILLLILKDKSHNSDR
FT                 DKENYINMRKLYRSEIKTAKCNANNEYILNSKNKCKAAWNVIKREINNNNK
FT                 KTVFPKNSIPIDCDILNEHFVNGNSTPPIDSNFDVEAFLTYAKQTRSEKFT
FT                 WAPITLNDIQHSIXKLNYSKTEDYYGXSNFIIKSIVKEVQMPLLSLSNRVL
FT                 DEGTFPNVLSLQSHCLCIKKEIKIFQVTTDPSQRNLPKCLKLTVTLPVYKK
FT                 GDKNLPSNYRPISIVPILSKIIENCMHKQIYKYFECNKLLNEQQFGFRPHL
FT                 STVKAVESLVNNVYEGYEKRLYTSGTLIDLSKAFDSVSHDVIIKKLEYYGI
FT                 GDKPLKLLKSYLSNRVQLVICKQSEISNPPNKKRNTPRLGSWTLHFHCLCQ
FT                 AIGYSLLYANNQRSAILPIKRGIPQGSVLGPFIFIVYVNEFPTYIPCKSVL
FT                 YADDMTLITTGDNLQSVLDKNKEMIEMTSQWCQANQLCINQTKTEEIIFNL
FT                 KVSKNENKTVKLLGLVIDQKLSWEGHTNYLCSKLARVLFLLYKLRGSISKQ
FT                 LLLQSYYAFFHSHLQYGTLLWGNSSGAKCVFRWQKRKQMCIQMAKKKAVRC
FT                 ILGLAHNESCRSRFKSLGIMTIPSLYIYNCLVYAKENIDKFNMRRNVHSHN
FT                 TRNNCLLDLPSTRLAIVQNNYKYLSLKFFNKLPQSARTMPLSKYKNTLQTW
FT                 LKSSEFYSIEEFLETDSKNICFS"
XX
SQ   Sequence 4325 BP; 1656 A; 733 C; 777 G; 1152 T; 7 other;
     aagatggcga caagtgcagg ggaagtaata ttagtgtgac gaaaagttat agttatgctg        60
     tgaaaacggt gttgtgaaaa acgatgtatg caataactgc aaagaagaaa tcgagaagtt       120
     aaatgaacga ttaaaaagtc tccagcaagt taccgatacg ctgttgcggg aaattgcaaa       180
     actcggaaac gagaaccgtg agttaaaaac actagttaga agcaacagca aagtactgag       240
     ttcaaatgtg ttgcggaaca ctaagaacaa ttcgaaactt attgagacaa atggtcacag       300
     taaggtaatg gaaaataatg gtcaacctcg tgtaaacagt tctaacataa taacccgtgg       360
     aaataacggc cagaaatgcg taaataactc gcttgcgagc caaagtgaaa acaatggctg       420
     gaagtgtaca aacagttcaa atagtgtctc ggaagaaaaa tcaaaaacag tgattggtaa       480
     agtgcaatgc tccaaacaaa accaaataaa taaatcttat cttgtatgca gaaacaagtt       540
     taatgtgtta tctgaaagca gcaacatgga cgtgaatagt gaaagtgaaa acaagcctac       600
     caatgtgaag ctaaagacat aaaggaaaac cgtaaatcwg ccacaagcaa taagaaacta       660
     acggccgaga aatgcaatgt gctttttcta gcggacagcc atgggaggaa gctagccagc       720
     attttaggcg atgtgagtac ggacttaaat acgactggca tcattaaacc cggcacgaga       780
     acgaagaata ttattggwga cgtctcggaa ttcaagacta caatgaagaa tagtgatttt       840
     gttgtttgca ttactggttc aaacgacgta gcacagaatg aagctaaaaa gtgcataaca       900
     ggtttgagaa acttcttaga tgcaaataag acggtaaaca gtcttgttgt gacgatacct       960
     cagaggcatg atctgaccta taattcatgt gtaaacaaag aaattcgtag gaccaatgtt      1020
     aaaatcaaac agttatgctc cagttatgcc aaatgcaacg tagtagatgc cagtagactg      1080
     aacagaaatc tacacacaca acatgggcaa catttaaact atcacgggaa aaaattccta      1140
     tgtcaggaaa taaagaacgt tataaatgaa acacgcgaac gcaataagtt tgttctaaaa      1200
     gacagtccct ctgtacatgc tcatgtccct ccttttttag acaaaacaat gacacaaagc      1260
     aaggaaaggt agaaacwatg ttgataggga actgtaacaa attaattcag ctggaccatt      1320
     gtgatgatcc agaacatgta gcgaaaataa atgaacatac agcacacaat gaaaacaaaa      1380
     taccctcttg tattgatggc aacattctcc ttctacatat aaatgtacaa tcccttagaa      1440
     gtaaaatgaa tgaactacaa tattggcttg acagaatcaa ctgcagtgtt ttgtgtgtta      1500
     atgaacactg gatgaaagcc tgtgaaatag acctgtgtgt tcctataggt tacttactaa      1560
     ccaactagtt actgcagaaa aaatattgta tgtggcggag tctcaatcta cataaaaagc      1620
     aacctagact tgcaatactc agttatagat cttaacatgg tttgcattga aggtacatag      1680
     aagtagctgg tatagtattg cacacacaaa aaattgtaat tgtctcaatt tatagaactc      1740
     caggctctga tgaaatagtt tttatagaaa aaattaatgc tttaatatta cacttgtcca      1800
     aatataaaca acaaaattgt aattgtaggt gatattaaca ttgatataag ggctacgaga      1860
     aaaaatgtag tagatatgat taactctctg aagtcattaa attattattg tctgaatgaa      1920
     aagcctacta gacttaatgc ctgtcttgat aacataataa gtaatgtaca tagagactta      1980
     gtgcaatgtg atgttataga attaggttta tcagatcatg caggtttatg gctccaaata      2040
     gataatcaac ccttgttacc aaagaaaggc aagtgacata tcgattgcta ggtgaatcca      2100
     atgtaagcaa tatgaaaaat aagttacaag aaaaggattg gtcccaaata atgaatagca      2160
     atgaaacagt tgataaatgc ttttccattt tcctgacaga gattagcaca tagtagaaaa      2220
     gacatgcccc atggtaacta gaagatatac taatacccca cgtaagctcc aacatactaa      2280
     taaatggtac acaccacagc taaacagact caggatatta ttactcatac tgaaagataa      2340
     gtctcataat agtgataggg acaaagaaaa ctacataaat atgagaaaac tttacaggtc      2400
     tgaaataaaa accgccaaat gtaatgcgaa taatgaatac attttgaact caaaaaataa      2460
     atgtaaagca gcgtggaatg tcattaagag agaaattaat aacaacaata aaaaaacagt      2520
     attcccatag actgtgatat tcttaatgaa cattttgtaa atggcaacag tactccaccc      2580
     attgattcta atttcgatgt ggaagctttt ctgacttatg ctaaacaaac aagaagtgag      2640
     aaatttactt gggccccaat caccttaaat gacattcaac actcaataas caaactcaac      2700
     tattcaaaaa cagaagacta ttatggtmtc agcaatttca tcataaagtc tatagtgaag      2760
     gaagtccaaa tgccacttct ctcactgtca aacagagtat tagatgaagg aaccttccca      2820
     aatgtcttaa gcttacagtc acactgcctg tgtataaaaa aggagataaa aatcttccaa      2880
     gtaactacag acccatctca atagtaccaa tcctatctaa aataattgaa aactgtatgc      2940
     ataaacagat atacaagtac tttgaatgca ataaattatt aaatgaacaa caatttggat      3000
     ttagaccaca cttatcaacc gtgaaagcag ttgaatcact ggtaaataat gtttatgaag      3060
     gatatgaaaa acggctatac acttctggaa cccttattga tttaagcaaa gcgtttgatt      3120
     ctgtgtctca tgatgtgata atcaaaaagc tggaatacta tggaatagga gataaaccac      3180
     tcaaattact caaatcctat ctaagcaata gggtacagct tgttatatgc aaacaatcag      3240
     agatcagcaa tcctcccaat aaaaagagga ataccccaag gctcggttct tggacccttc      3300
     attttcattg tctatgtcaa tgaatttcca acttatatac cctgtaagag tgtattatat      3360
     gcagatgaca tgacattaat aaccactgga gacaatctac agagtgtgtt ggataaaaat      3420
     aaagagatga tagaaatgac tagccaatgg tgccaggcca atcaactctg cataaatcag      3480
     acaaaaacag aggaaataat ctttaacttg aaggtatcta aaaatgaaaa taaaactgtg      3540
     aaattgcttg gactggtcat agaccaaaaa ctctcttggg aaggacacac caattaccta      3600
     tgcagcaaac tagctcgtgt acttttccta ttgtacaaat tgaggggcag tattagcaaa      3660
     caattattgc ttcaatcgta ctatgctttc ttccattccc atctgcaata tggaacattg      3720
     ctgtggggaa actcctcagg agctaaatgt gtattcagat ggcaaaaaag aaagcagtaa      3780
     ggtgtatatt agggctagca cataatgagt cctgcagaag tcgctttaaa tcgcttggma      3840
     taatgacgat tcctagtttg tatatatata actgcttagt atatgctaaa gaaaatatag      3900
     ataaattcaa catgagaaga aatgtgcatt ctcacaatac amgaaacaac tgtctgttgg      3960
     atttgccttc cacgagacta gccatagttc aaaataacta taagtattta agcttaaaat      4020
     ttttcaataa gctaccacaa tcagctcgta caatgccact gagcaaatat aaaaacacac      4080
     tgcaaacttg gctaaaatcc agtgaattct actcaattga agaattccta gaaactgaca      4140
     gtaaaaatat atgtttctcc taaattatgt tattgtttcg ttgtaatatg tgattctgta      4200
     tgtatgatat atgcttaatg tataaatgta atgtaggcta taaatgtaaa ttccactatg      4260
     taccctgacg aagccaattg tatgaaaaat actgaaaggc caataaatat tctgtattct      4320
     gtatt                                                                  4325
//
ID   Daphne-17_LMi repbase;    DNA;    INV; 4433 BP.
XX
AC   .
XX
DT   14-APR-2014 (Rel. 19.11, Created)
DT   15-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4433
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3131-3131 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(511..912,848..1351,1350..1712,1716..2288,
FT                 2292..4211)
FT                 /product="Daphne-17_LMi_1p"
FT                 /translation="TDEVLCTGDRNTQTEDNRTSHTKVHLHKHSTDSQQDN
FT                 AAENCNANVSTKQTNEILRNVCSDSIRTSVFSSKQKHAATGSNNSNVNIKP
FT                 SKETESKQCFNLTCPMDENSSENVEEPYQEVRKKWRGKAHLSKKPSRNPIK
FT                 KCARNGEEKHTYQRNLHRQKHTKTRPKRTNILHKGTTNFHTECKLPITELN
FT                 YIWKYQIQKQVQNNSWNRRRTGLLYGEKRAWIHLSRVRSGTTPEDVITFLH
FT                 KKFPNHNNFTAEKLETKGLNNSFKVSVDFELRDKVMDSNVWPKNVMVKRFL
FT                 FQRMDSIPVKNRLVCDKLQQKPTEKDLHTAVNATPIVLCSINVQCLRTKLD
FT                 VLSFFIEEVKPDILCLCEHWLTAQEAEYYNSIEYLSLVNGWYRTTVAGGGV
FT                 SIYANSRLSIKEIDLKSFSVDIDLELTALLLDLNIIVVSVYHSPKGNFENF
FT                 LNRMESCLCYLMRLNSKIALCGDFNIHFGENSTKEREFMNIITSYGLFVGN
FT                 YLPTRGDACLDTVITNLNTWDYKMNVFDPMISDHRALVMDLCTKQGSNQQA
FT                 ATWHANYVFTKRVISKETLCNFQTAVSDIDWQPRLQEMAASDAFKEFFQTI
FT                 KAKFDYSYPEKSKNILASHITVKAKTWYTSELKKIKCIVLLLNDHYKTATD
FT                 PKEKEFFYKKYLQAKRLYRKDVEEAKKKSNDRFIAGAHNPCKAAWDLINEN
FT                 RKKITSPLHLCSPDDFNNYFIEIVENTVSAIPDLNTDPAAAVRNENRCTMI
FT                 NWKELQQKEIIKIIKSFKPSDSQDIYGMSINILKKIVYEIARPLTVVVNKC
FT                 LYAGVFPDFLKLARTVPVYKKGDPGKVENFRPISIIPVFAKVIETAMKDQI
FT                 LEYFETNELFSEAQHGFRKGRSTTTAAMDLVNRIKHSFEERECVVLTLCDL
FT                 SKAFDCIPHTVLLNKLSRYGIGGTVLSTLKSYLENRRQIVSVQGALSQERK
FT                 LKYGVPQGSVMAPLMFLAFVNDISSLGQYLQFADDTTLLSKDVNATKALEE
FT                 ADVLFETTKQWFTINKMKINAEKTQKLMCSLSDKEDPNGIGAVKLLGFMID
FT                 DRLTWQEHTSHVCDKLSRVIYLLRKLKHVITKQYMLMVYYSLFHSHINYGL
FT                 LLWGHSAGCKKILLLQKKAIRIISSSRRHEHCKPIFKQLGVMTIFSQYVFS
FT                 CLMYVKENQETFSNRSDFHNYDTRNKGKIDIPSCRLSKTRDSFPAVAIKMF
FT                 NHLNNELRSLELGKFKRKMSQYLRQKPLYSVSEFFDSETANWTV"
XX
SQ   Sequence 4433 BP; 1619 A; 844 C; 877 G; 1093 T; 0 other;
     agatggcggc gagtgacgat aaatcgtggt tcagcaaaaa acagttaaaa acacggatac        60
     gtttgtgtgt ggatattgcg taggcccgag taacgtgaag ccgtacgtga cttgttctaa       120
     agaacgaatt aatttcattg tgaggtctcg agaagaaatt ggctatcggt aacgaacttt       180
     tcgaagaaaa ggcagcacaa gaccctaaaa attcgccgaa ttgtgcctac aactgtgcca       240
     gcttattaga gttagtgcaa aatcttacga agctaactca agaactatca aatgacaact       300
     cagcgataaa ggtaaagcta gatacagttc tcagttctac tgcaagattg gaaaaatatc       360
     acagtcatca aagtgtaatg aaaacagaat tgaagaaatc ccagacaaca gtgtggacta       420
     tagggaaagt aatcttacga agcggaaaac agtaccggta attcgtgatc aaaacaacag       480
     gaactcgaac tacgaaagtg taaacagtaa acagatgaag tcctatgcac tggtgaccgc       540
     aacacacaaa ctgaagataa caggacatca cataccaaag tacatcttca taaacattcg       600
     actgacagcc agcaagataa tgcagcagaa aattgcaatg caaatgtaag tacaaaacaa       660
     acaaatgaaa tcctgagaaa tgtgtgtagt gactcaatcc gtacaagtgt gttttcaagc       720
     aaacaaaaac acgcagctac agggagcaat aattcaaatg tcaatatcaa accttctaag       780
     gagacagaat caaaacagtg cttcaatctt acgtgcccca tggacgaaaa ctcgtcagaa       840
     aacgtagagg aaccctatca agaagtgcgc aagaaatgga gaggaaaagc acacttatca       900
     aagaaacctt cataggcaaa aacacaccaa gactcgcccg aaaaggacaa acatcttaca       960
     taaggggact acaaatttcc atacagaatg taagctccct atcacagaac tcaattatat      1020
     ctggaaatac caaattcaaa agcaggttca aaacaatagt tggaacagga gaagaacagg      1080
     actgctctat ggtgaaaaaa gggcatggat ccatctgagc agagtcagaa gtggaacaac      1140
     tccagaagat gtcattacat tcttgcataa gaagttcccc aatcataaca acttcacagc      1200
     tgaaaagctg gaaaccaagg gactcaataa cagcttcaaa gttagtgttg acttcgagtt      1260
     aagagacaaa gtaatggata gtaatgtatg gccaaaaaat gttatggtaa agcgtttttt      1320
     attccagaga atggacagca tccctgtgaa ataggctcgt ctgtgataaa cttcaacaga      1380
     aaccaacaga aaaggattta cacactgctg tgaatgccac tcccatagtt ttatgcagta      1440
     tcaatgttca atgtcttagg actaaacttg atgtattgtc attcttcata gaagaagtga      1500
     agccagacat actgtgtcta tgtgaacact ggttaacagc acaagaagct gagtactaca      1560
     actctattga atacctcagt ctggttaatg gctggtacag aacaactgtt gctggtggtg      1620
     gagtgtctat atatgccaac agtagattaa gtattaagga aattgactta aaaagcttct      1680
     cagtagacat agatctagag ttgactgccc tgtagctact ggacttaaac ataattgttg      1740
     tctcagtata ccactcacca aagggcaact ttgaaaattt tctcaataga atggaatcat      1800
     gtctatgcta cttaatgcgc ttgaattcaa aaatagctct gtgtggagat ttcaatatac      1860
     actttggtga aaatagcact aaggagagag aatttatgaa cataataacc agttacggac      1920
     tatttgtagg aaattacctg ccaaccagag gtgatgcctg tctagatact gtgatcacaa      1980
     acctaaacac ttgggactat aaaatgaatg tgtttgatcc aatgatctct gatcacagag      2040
     cattagttat ggatctctgt acaaaacaag gtagcaatca acaagctgct acctggcatg      2100
     ctaactatgt attcacaaaa agggtcataa gcaaagaaac actatgtaac tttcaaacag      2160
     cagtatctga tatagattgg cagcctagac tacaagaaat ggcagcatct gacgcattca      2220
     aagagttctt tcagacaatc aaagccaaat ttgactacag ctatccggag aagtcaaaaa      2280
     atatcctgta agcaagtcac ataacagtca aagcaaaaac atggtatact agtgaactga      2340
     aaaaaataaa atgcattgta ctgctactta atgatcacta caagacagca actgatccca      2400
     aggaaaagga atttttctac aagaagtatt tacaagcaaa aaggctatat agaaaggatg      2460
     tagaagaagc caagaagaaa agcaatgata ggttcatagc aggagcccac aatccatgca      2520
     aagcagcctg ggacctgatc aatgaaaaca ggaagaaaat cacctccccc ctacacttgt      2580
     gcagtccaga tgactttaat aattatttta ttgaaattgt ggaaaacact gtaagtgcaa      2640
     tcccagattt aaacactgac cctgcagctg ctgtaagaaa tgagaacagg tgcactatga      2700
     taaactggaa ggaattacaa caaaaggaaa tcataaagat tataaaatcc tttaagccat      2760
     cggatagtca ggatatatac gggatgtcca ttaatatcct caagaaaatt gtgtacgaaa      2820
     ttgccagacc attaacagtg gtagttaata agtgtctcta tgcaggtgta tttcctgact      2880
     ttctgaaact tgcaaggaca gtgccagttt acaaaaaggg tgacccaggc aaggttgaaa      2940
     actttagacc aatctcaata attccagtct ttgccaaggt aattgagact gcaatgaaag      3000
     accaaatcct agaatacttt gaaacaaatg aactgttctc agaggcacag catggcttcc      3060
     ggaaaggcag atcgacaaca acggcagcaa tggatctggt taatagaatc aagcacagct      3120
     tcgaagaaag agaatgtgtg gtactgacac tgtgtgacct cagtaaggcc ttcgattgta      3180
     ttcctcatac agtactttta aacaaactca gcagatatgg aattggaggc actgttctgt      3240
     caaccctaaa atcttacttg gaaaacagaa ggcagattgt ctcagttcaa ggagctctat      3300
     cacaagaacg gaagttgaag tatggcgtgc cacagggctc ggtaatggcc cccctcatgt      3360
     tccttgcatt tgtaaatgat ataagctcac ttggacagta cttgcaattt gctgatgaca      3420
     caaccctact gtcaaaagat gtcaatgcaa ccaaggcttt agaagaagca gatgttctgt      3480
     ttgaaaccac aaagcaatgg tttactataa acaaaatgaa aatcaatgca gaaaaaacac      3540
     aaaaattaat gtgtagcctc agtgacaaag aagacccaaa tgggataggg gctgtgaaac      3600
     tactggggtt tatgattgat gacagattga cttggcaaga acacacctca catgtatgtg      3660
     acaaactgtc aagagtcata tacctcctga ggaaactgaa acatgtgatc accaagcagt      3720
     atatgttaat ggtgtattat tcactgttcc atagccatat caactatggc ctcttactat      3780
     ggggtcactc tgcaggttgt aagaaaatac ttttactcca aaagaaagca ataagaataa      3840
     tatcgtccag cagaagacat gaacactgca agccaatctt caaacaacta ggagtgatga      3900
     ctatcttcag tcagtacgta ttctcatgcc tgatgtacgt aaaggaaaat caggaaacat      3960
     tctcaaacag gagtgatttc cacaattacg atacacgaaa taaaggtaag atagacattc      4020
     caagctgtcg actctccaaa actcgagaca gttttccagc agtggctatt aaaatgttca      4080
     accacctaaa caatgagcta cggtccttgg agttggggaa atttaaaagg aagatgtcac      4140
     aatatctacg ccagaaacca ctatacagtg tgagtgaatt cttcgacagt gaaacagcaa      4200
     actggacggt ctgaacaatg cacttttaag tgaatcaaga gaacatcttc ttgctgaaaa      4260
     ttactactta taaatcatta tgtattatct gtgcctatga acttttctct gtcctaatca      4320
     tgtatttgat ttattattgt atgtttgtat aaacttaacc ttataacact gacacagtct      4380
     gtccagtctt gactggcgaa tgacgtagct atggtaataa atggtaataa tgt             4433
//
ID   Daphne-18_LMi repbase;    DNA;    INV; 3766 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.11, Created)
DT   15-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3766
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3132-3132 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(212..610,592..813,812..1060,1011..1631,
FT                 1615..2010,1982..2245,2233..2370,2328..2444,
FT                 2448..2567,2540..3616)
FT                 /product="Daphne-18_LMi_1p"
FT                 /translation="RNCHNKQKIRKICNSFLHATFIEASSSIREHFTRHGL
FT                 HRNXLGKIVLAKEIXQAIKTAGVDTDEKIALPAIGSLPMAXEKENAPTAHD
FT                 EDTSLPTPPEEIRRTSASVCEASLPPWSSQPALEDETAEATPSQSGNTITV
FT                 MTEVPTATVATLSPKGRKKTPAEEEISVVGKRKTVPPSVMKWTQQGEEAHE
FT                 ISSVKLPGSLVQMFILKSKDHFDLKICYLNIQGLKDVIVNTFGLKNNIDIF
FT                 CLSEHWAGDSELSVVKFDNYNLANNYSRKLYIRGGVAIYINLSLSCLGIEV
FT                 VWQSTLTCHSVVWGSRLLCDEKNFEVNNNTLYRSPKGIISVFLEKLDMLLE
FT                 IFSEKKWSHYDVVIGGDLNADFDVTTTKHSVTELKNILRQYNLHFINSRPT
FT                 RDEACLDNIFVNFETTESSCEVTVFPFSDHDPVSLNYVNRFCADKSNIEMY
FT                 VPKVVITRPVTDDKIVRFCQSLTNRDWFGQYSVTHYSLCNDLPPKLIFERF
FT                 FYLKGFFKAFITQFNDCIPTKKCKITNKDHSSKGKNKQNPWYTIQLTNLKN
FT                 QVMLLHNIYKNLKTDHARSAYVKTRNEYKKAIAEAKKAHNFSTIENSTNKC
FT                 KAAWKLINSVAKHERNKRINVSPQKFNDFFYVPRNSMIFFIKSVEEVGNAI
FT                 IKPDITSSQILSKNISKPPANTSMFSFSEVSPSHVLRIVKQLKSSDSVDIY
FT                 DISCTILRKVIDSIVYLYCVPLTYCINKCITEGYFPDELKVSRVVLIYKKV
FT                 MLTPLLVTGQFPKSDVDSPSSYRPISIVPALSKVFECVIYQQLCAYFENQK
FT                 LASHSTVLEKTCQLLTLRPVVKYLHQVLENKGFAQITFVTRLCSNHFCDLS
FT                 KAFDCVEHKALLEKMELYGIRGNSLKLLESYLQNRKQVVCVGKEMSSMQQV
FT                 KIGVPQGSVLGPFLFLIMINDLPSFIKSPTVLYADDTTFLHCSNEFSNLKT
FT                 CVAETMEQASYWFKANGFLLNNDKTQQMVVSLKDKLPSDDPTYVKFLGVYL
FT                 DNKLSWAQHIQYISGKLSRVIYLLRQLMNCVPEKYVRTSYFSFFQSILTYG
FT                 IILWGNSSSVHDILILQKKAIRVISGATYKAHCKPLFCELKIMTVINLYIY
FT                 YVLLYTKKKLPETKRRENVHGYNTRRTRCIYTPYHRLSKTINSYELMGHKL
FT                 FNKLPQSVQELPEHAYKQTLYDWLVAHPFYEVNEYFNCNMTL"
XX
SQ   Sequence 3766 BP; 1354 A; 649 C; 667 G; 1091 T; 5 other;
     gaaaccgctc aggtagatct gcaaataaac catgaaacta cagtaaaaag tggcgtaact        60
     gtgtcataat tggtggaggc aatgatgtat ataaaacgag agtagcctgg ctataagagc       120
     attgagagga tcgctagtaa aaatgccata agcgaatgta tttttcgaag cattccctac       180
     agacacaact tattggaaaa tgtgtaaata gagaaattgt cacaacaaac agaaaattag       240
     aaagatttgt aacagttttc tacacgcaac ttttattgag gcaagcagtt ctatcagaga       300
     acattttacg agacatgggc tccacagaaa cmagctaggc aagatagtgt tggccaaaga       360
     aattttkcaa gcaataaaaa cagcaggtgt wgacactgac gaaaaaattg cacttcctgc       420
     aataggctcg ctgccaatgg caamagaaaa ggagaatgca ccaacagcac atgatgaaga       480
     tacatccctg cctacaccac ctgaagaaat taggcgtaca tcagcatcag tttgtgaagc       540
     atcactgcca ccatggtcat cacaacctgc actagaagat gaaacagctg aggcaacacc       600
     atcacagtca tgacagaagt tccaacagca acagtagcta cattgtcacc aaaaggaagg       660
     aagaaaactc cagcagagga agaaataagt gttgtgggta agcggaaaac agtgcctcct       720
     tccgtcatga agtggacaca gcaaggtgaa gaggcccatg aaataagcag tgtaaagtta       780
     ccaggatctc tagtccaaat gttcattcta aagtaaagac cattttgatc ttaaaatttg       840
     ctatttgaat attcaagggc taaaagatgt cattgtaaac acttttggtt taaaaaataa       900
     cattgatatt ttttgtctga gtgaacactg ggctggagat agtgaacttt ctgtagttaa       960
     atttgataac tataatctag caaataatta cagtagaaaa ttatatataa gaggtggtgt      1020
     ggcaatctac attaacctgt cactcagttg tttggggatc tagattatta tgtgacgaaa      1080
     agaattttga ggttaataat aataccttgt accggtcacc taagggtatc attagtgtat      1140
     ttctagaaaa actggacatg ctgctagaga tatttagtga gaaaaagtgg tcacattatg      1200
     atgtagtaat aggtggtgac ctgaatgcag attttgatgt aacaacaacc aaacatagtg      1260
     tcactgagct caaaaatatt ttaagacagt acaatttaca ctttatcaac agtagaccca      1320
     caagagatga agcttgtctt gataatatat ttgtaaattt tgaaactaca gaatcatcat      1380
     gcgaagtaac agtattccca ttctctgatc atgatcctgt atctttaaat tatgtcaata      1440
     gattttgtgc tgataagagt aatattgaaa tgtatgtccc aaaggtggtg atcaccagac      1500
     ctgtcacaga tgacaaaatt gtcagatttt gtcagtccct taccaacaga gattggtttg      1560
     gtcaatacag tgtcacacat tatagtttat gtaatgattt gccaccaaag ctaatatttg      1620
     aaaggttttt ttaaagcatt tataacacaa tttaatgact gtattcccac aaagaaatgt      1680
     aaaataacta acaaagacca tagcagtaag ggtaaaaata agcaaaatcc atggtacacc      1740
     atacaattaa caaatcttaa aaaccaagtt atgctcttgc acaatatata taaaaatctg      1800
     aagactgacc atgccagatc agcctatgtt aaaactagaa atgagtataa aaaagccatt      1860
     gcagaagcca agaaagcaca caatttcagc accattgaga attccaccaa taagtgtaaa      1920
     gctgcatgga aactaattaa cagtgtagct aaacatgaaa gaaacaagag aattaatgta      1980
     agtccccaga aattcaatga ttttttttat taaatctgta gaagaagtag gaaatgcaat      2040
     catcaaacct gatattactt catcacagat cctttcaaaa aatatctcta aaccaccagc      2100
     aaatacaagt atgttttcct tttctgaggt gtctcctagt catgtcctaa gaatagtaaa      2160
     acagctgaaa tcatctgaca gtgtagatat atatgacatt tcttgcacta ttttaaggaa      2220
     agtaatagat agtattgtgt acctttaaca tactgtataa acaagtgtat aactgaagga      2280
     tattttccgg atgagctgaa agtatccaga gtagttctga tatataaaaa agtgatgttg      2340
     actccccttc tagttacagg ccaatttcca tagtcccagc tctttctaaa gtatttgaat      2400
     gtgtaatcta tcaacaatta tgtgcttatt ttgaaaatca gaaataatta gcaagtcaca      2460
     gtacggtttt agaaaaaacc tgtcaactct tgacgctaag accagtagtc aaataccttc      2520
     atcaagttct tgagaataaa ggctttgctc aaatcacttt tgtgacttaa gtaaagcatt      2580
     cgactgtgta gagcataaag cactcttaga aaaaatggaa ttatatggca ttagaggtaa      2640
     cagccttaaa ttattagaat catacctaca gaaccgaaag caagtagttt gtgtcggaaa      2700
     agaaatgtcc agtatgcaac aagtaaagat aggtgttcca caaggatctg tattaggccc      2760
     atttctgttc ctaatcatga tcaatgatct gccatcattt atcaagtctc ctaccgtttt      2820
     atacgcagac gatacaactt ttctccactg tagcaatgag ttcagtaacc tcaaaacctg      2880
     tgttgcagag acaatggaac aagcatccta ttggtttaag gcaaatggct tcctacttaa      2940
     taatgacaaa acacaacaaa tggttgttag tttaaaagac aagcttccmt cagatgatcc      3000
     aacttatgtt aagtttttgg gtgtatattt ggataataaa ttgtcttggg ctcaacatat      3060
     acaatatata agtggtaagt tgtccagagt gatttatttg ttaaggcaac ttatgaattg      3120
     tgtacctgaa aagtatgtta gaacatccta tttttctttc ttccaaagca tactaacata      3180
     tggcatcatt ttatggggaa actcaagttc tgtgcatgac atcctgatac tgcagaagaa      3240
     agctattagg gtaatttctg gtgctacata taaggcacac tgtaaacctt tgttctgtga      3300
     actaaaaatc atgactgtaa taaacctcta catatactat gttttacttt acacaaaaaa      3360
     gaagttaccg gagacaaaac gtagagaaaa cgttcatggt tacaacacca gaaggaccag      3420
     atgtatttat accccatacc acagactgtc gaaaactatt aacagttatg aactcatggg      3480
     acacaaatta tttaacaagc tcccacaatc tgtacaagaa ttacctgaac atgcatacaa      3540
     acaaacactg tatgactggc tagttgccca tccattttat gaagtaaatg aatatttcaa      3600
     ctgtaatatg acactgtaat cctattagca aaactgtttc ttttgaatta tcaattgtac      3660
     ttaattatgt tgctttgtct cctattagca aactgttgta atatatgtat gactttgtct      3720
     attgctgtta tggctgaatg acaataaaat tattattatt attatt                     3766
//
ID   Daphne-19_LMi repbase;    DNA;    INV; 5037 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.11, Created)
DT   15-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5037
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3133-3133 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2063..3106,3121..3294,3237..3482,3385..4713)
FT                 /product="Daphne-19_LMi_1p"
FT                 /translation="SRLWGSSIYVSSNLGLRYTVLDVRNLCVKSVLEAAVM
FT                 LLPSLKLTVISIYHTPDSDAEQFVECLDKLILHTEKYAEHKTLIFGDLNFD
FT                 VRKKTPRNDKLLNMLRSHNLFCANYSPTRKHSCLDNFITNVHKDNFELGLL
FT                 NLNYLTDHKGIWVKLVINETEGDCRPKPIKCVRLLNDNSITIFREKVKVLN
FT                 WNNITYASSNVEEAFSKFISTLSGIFNTSCPMVTKHKKCKASRHGQAILHK
FT                 WFTPHLQKLRSLVLICYDKVKSGNVDKTEYINLKRHYRSQIRIAKCRANDN
FT                 FIDSSSNKCKAAWRVIKTELGIGTHCRKITNEVNVTPDEFNQFFYQCCKPL
FT                 FLASLNLYLNQSHIQAYINHFLQNFADTVPTCSWRKVEVNDVIKAVGKLSS
FT                 SKSEDITASQIFSSRKTKQLQIRRYYGFSNFLIKTIIDLISFPLCTLINWM
FT                 FVTGIFPDCLKKTVVIPLHKKGDKSCTNNYRPISLVPIFFKNNKRQLSSHY
FT                 TKRVINPALIIIVLYLWYLFFSKIIEYCIQTQICKHLSKNNILTKSQYGFR
FT                 PQLSTVKAVENVVSIIQNAFESKLSAEATLVDLSKAFDSVNHTILLEKLWC
FT                 YGFRELELCLIKSYLSNRKQLVNYNGQKSQFLNVTRGVPQGSVLGPLLFII
FT                 FINDLPSNMPCNSVLYADDTTFISSGKDIKKLKEQSKDHLGLSNMWFEANE
FT                 LAINYEKTVHISFSMSNVDVESTSTKLLGIYLDTKLTWKDHVDYISRKLSR
FT                 VVYLLRKLRTCVSENLLIKSYYAFFHCHLNYGILLWGNSPSARNIFIWQKK
FT                 AIRSICGITNSSVSCRPYFKELQIMTVPSLFIYNCLLYIKENLNSYNLRKS
FT                 IHNHNTRQTYKIDIPVTRLKKTQDSYEYVGIRLFNTLPVQAHTASLNAFKN
FT                 KTKKWLEEKAFYSLKEFENCSKDDLTY"
XX
SQ   Sequence 5037 BP; 1846 A; 898 C; 862 G; 1428 T; 3 other;
     gatggcgcca agtgcaagtt gtgttgttca gtgttctgca gaaataacta gtaagaaaga        60
     agaaaagtgt tcatcgtgtg aaaaattgga catctacaat caagaaagtg catctcgtgt       120
     gatattatcg aaaaattagg tcgaaagagt aagacgaaaa cgtacaatgc aagtaatgag       180
     ataggcctat catgtgtagc atcaacatcg tctcatgaat acactagcat aacggaaaaa       240
     gtgactcttt caaacctttg ctattgcaag aagcgatctt ttaaaggtgt ttcgtgctta       300
     aaatgcaaga ctgtgtacca ttacagttgc gcaaatgtga atccaaaaca gaaaatgtgg       360
     ctctgttcta catgtggtga cgaagattta gacattaaat tacgcgacac agacgataaa       420
     actaaaatta tatcagtttt agttgatgag atattagctt taaaaaataa atgtgaaaag       480
     tttctccgcc aaaatgaaca gtgcgaagat ggcataaaag aaaagtgtat cagccagcat       540
     gaaatataca ccaaaagaaa cgaatggaaa gtagtgcaac aagaaagtta cgcctagagc       600
     agaaaaatca cggataatat gcctgcaacg ccggcaattt caaatctcat aaataataaa       660
     gtggtaacag tatgtctact acaatccaaa ctgctgaagg atgtagagaa ctcgaaaatc       720
     agggtgcaac aaaaaacagt tacgataata aaatacaggt actgttatta tcagacagtc       780
     atggcagaaa ctgtgcaaaa gtactgaacg aaatttcatc accaaggtat aaatttacat       840
     cttttatcaa gccaaatgct atgtttaaag atgcaacttg caacacacaa acaagcactg       900
     gcttagaaaa aatgactatg tagtggtctt agctggtaga aatgacactt ggtaaaaaat       960
     ggctttataa cttcactaaa tgaaaccatc acaaaaacta tgcacacaca attattaatt      1020
     ctgtgcacaa taccatacag gtatgacaag ccaagtgaaa attgcaaaat attctaagta      1080
     aatagctgct tgatgcagaa atcatcttat attaatcatg tcagagtgtt taaacagctt      1140
     cctacaacag aaagatttca caaggcatgg atttcacata caataaggga aaaaagaaac      1200
     tctgtgataa tttactgaat gccatcaaaa gtcccctgac aacaagaatg ccataaaata      1260
     tattaccaca gctcatcaaa catattcata acacaagaag ttagttcgac gatacgtcca      1320
     gcagaacagg gaatactgca gctgaaccaa accaagaact gaggaactat cagtagcaac      1380
     agcagaggtg attatgcaat cagcctgtct agaaaacatc agcggcacca acagaaaaag      1440
     aggacaccac aatgagccct gaaacttcag ctctatctat gccaaagtct tgtcaagtgc      1500
     ctctaatcaa tctgcccata tgaatcatgt agccaacaag gaccaaagaa taagaagaaa      1560
     gttaccttgg taagtgctaa atcatctctt gcaacatata gtgaagtgtc acaagtacat      1620
     caaaccagcc atcacacact aaagtgtgcc acacaaatta tgcaagagtg aaataaaaat      1680
     gtctaccacc agagtctcaa acagggtcaa aaagatgcca cagagaaatg atgattttta      1740
     ccccccccca aagaaagttg agwcgccacc gaaatgtagt ccgcccagtg caacaaacta      1800
     aggaccactg saaggggatc cactgtgggt gtctctaata tgtcacagag ctcaacgtat      1860
     cttcatgctt gtagtgaaaa ttcagtgtta tttgtacata taaatattca gtctctgaaa      1920
     cataaggctg atgaacttgg tgttmtactg aatgggaaca acagaataat attgtgtgtt      1980
     aatgaacact ggttagagaa gaagagataa atctgtatgt accaccatgt tttaatttag      2040
     ttacaagcta ctgcagacct agtcaaggtt atggggttct tcaatttatg taagtagtaa      2100
     tctaggttta aggtatactg tgctggatgt taggaactta tgtgtaaaaa gtgttcttga      2160
     agctgctgtc atgctattac catcactaaa actcacagtt atttcaatat accacactcc      2220
     cgatagtgat gcagaacagt ttgtagagtg cttagataaa cttattctcc acacagaaaa      2280
     atatgctgaa cacaagacat taatttttgg agatttaaat tttgatgtta gaaaaaagac      2340
     tcccaggaat gataaattgc ttaacatgct aagatctcat aatcttttct gtgcaaatta      2400
     tagtcccaca aggaaacact cttgccttga caattttatt acaaatgtac ataaagataa      2460
     ttttgaactt gggttactca atcttaacta cctgacagac cacaaaggta tatgggtaaa      2520
     actcgtaatt aatgaaacag aaggggattg taggcctaaa ccaattaaat gtgtcagatt      2580
     gttaaatgat aatagtataa ctatcttcag ggagaaagtg aaggtattaa actggaataa      2640
     cataacatat gcctccagca atgttgagga agcctttagc aagttcatta gtactctatc      2700
     tggaattttc aatacctcct gcccaatggt aaccaaacat aagaagtgta aagcaagtag      2760
     gcatggccaa gcaattctac ataagtggtt cacaccacat ttacagaagc tacgatcatt      2820
     agttttgatc tgctatgata aggtcaaaag tggaaatgtt gataaaactg aatacattaa      2880
     ccttaagaga cactacagat cacaaatcag aatagccaaa tgcagagcta atgataactt      2940
     cattgatagc tccagtaata aatgtaaggc tgcatggagg gtcattaaga ctgaattagg      3000
     tataggcaca cattgtagaa aaattacaaa tgaagttaat gtcactccag atgaatttaa      3060
     ccagtttttt tatcagtgct gcaaacccct attccttgcc tccttataag aagactttga      3120
     aatttatatc taaaccaaag tcacatccaa gcttatataa accattttct acaaaacttt      3180
     gctgacactg tgccaacttg tagttggaga aaagtggaag taaatgatgt aattaaagca      3240
     gtaggaaaac taagcagctc caaatcagaa gatattacgg cttctcaaat tttttaatta      3300
     aaacaataat tgacttaata tcgtttcctc tttgcacact cataaattgg atgtttgtga      3360
     ctggtatttt ccctgactgt ctgaaaaaga cagttgtcat cccattacac aaaaagggtg      3420
     ataaatcctg cactaataat tatcgtccta tatctctggt acctattttt ttcaaaaata      3480
     attgaatatt gcatacaaac acaaatttgc aagcacttgt caaaaaacaa catattaact      3540
     aagtcgcaat atggatttag accccagtta tcaacagtta aagctgttga aaatgtagtc      3600
     tctattattc aaaatgcctt tgaatcaaaa ttatcagctg aagccacatt agtggaccta      3660
     agcaaggctt ttgactctgt taaccataca atattactcg aaaaactgtg gtgttatggc      3720
     tttagagaac tggaactttg cctcatcaaa tcgtacctta gtaataggaa acaacttgta      3780
     aactataatg gtcagaagtc tcagtttctg aatgttacta gaggtgttcc ccaaggatct      3840
     gtgctagggc cactattatt tataatattt ataaatgact tgcccagcaa tatgccatgc      3900
     aactctgtgc tatacgcaga tgatactact ttcatcagct ctggaaaaga cataaagaaa      3960
     ctgaaggagc aaagcaaaga tcaccttggg ttgtccaata tgtggtttga agccaatgag      4020
     ttagcaatta attatgagaa gactgtacac atttctttca gcatgtccaa tgttgatgtt      4080
     gagtcaacat ctaccaaact cctaggcata tatctagata caaaattgac ttggaaggat      4140
     catgtagact atatatctcg aaaactctct cgtgttgtct atctacttag aaagttacgc      4200
     acatgtgttt cagaaaatct gctaattaaa tcctattatg ctttctttca ttgccattta      4260
     aattatggta ttcttctgtg gggtaattct ccaagtgcca gaaatatttt tatttggcag      4320
     aagaaggcca tcaggagcat ctgtggaatt accaacagca gtgtatcatg tagaccttat      4380
     ttcaaagaat tacagataat gacagtccct tccctcttta tatacaactg cctactgtac      4440
     ataaaagaaa atcttaacag ctacaacctt aggaaatcaa ttcacaatca taacactcgg      4500
     caaacgtaca agatagacat acctgtaaca cgacttaaaa aaacacaaga cagttatgaa      4560
     tatgtaggaa taagactttt caacacttta cctgtacagg cacacactgc ctctcttaat      4620
     gcctttaaaa acaaaacaaa aaaatggttg gaagaaaaag ctttctatag tcttaaagaa      4680
     tttgaaaact gttctaaaga tgaccttact tactaaataa ctgtttttaa tattataatt      4740
     ttgtaacttc tgtgcctttt tacttgtacg tgactttgta agtaattaaa caatatatag      4800
     ctccttaaat ttattatata tgtaactttg taagtaacta aacaatatat atttccttaa      4860
     atttattatg tatgttaatc aatatgtgta gctaatttgt atacagtgta ccaaagtgta      4920
     tggtttttct gtttaatgtc aaccttactg tataaaatct tttgtacaca acacatgaca      4980
     acatcaattg catgaaaatg cttaaagatg gctgaataaa ataaataaat aaataaa         5037
//
ID   Daphne-1B_LMi repbase;    DNA;    INV; 4795 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.11, Created)
DT   03-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4795
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3114-3114 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           558..1574
FT                 /product="Daphne-1B_LMi_1p"
FT                 /translation="MGEKCVTCRRIVSSGVWCDSCSGFFHWGECSGVGNGD
FT                 INEAHQWFCRICNRDRKIMEQEGKIAALQAELDKARETLSRLRREKGEQRW
FT                 EVATGNRGNRLRTVSDSFVINVKNRFDLLPQSESDEPHVAEAVERTQQTFK
FT                 KDLKKVGKTVKRKKVLLLGSSHGRGVGQLLQEELGPEYQVTNFFKPNAGLG
FT                 QVTEDIGSLCKDFTMEDTVVIVGGPGNSIDRNCEYSIECDLVKISSATKHT
FT                 SVGFVSVLSRHDRPHLNSSVRRVNLELERLLMSDMGSHIGLIPVDDICRWD
FT                 YTRHGLHLNRKGKGKLSGLIASNLRGGGALSQMVKYQWLQVSEGCLF"
FT   CDS           1729..4530
FT                 /product="Daphne-1B_LMi_2p"
FT                 /translation="MQYQLSLLHQNIPGLRNKLDELLICIDEIDSSNPIDI
FT                 ICLSEHHVATGIDMLNIPGFNLASHFCRVDMEGGGVATFIKNCYKFKNIDI
FT                 NKFCLEQHLEACATEVEFHNRCYIIVTIYRAPAGNYNLFLNHLEALLGYLT
FT                 GRNKEILVAGDFNTDFLMQSSSKHLLQSVTLSFNLTHTVNFPTRITKSSRT
FT                 AIDNIFIDKSKEQNHIIKPIINGLSDHDMQLLLLGTDSKQIMKTAKSTYRR
FT                 VVNPPKIENFRKLLKNMNWKDVYSAHGMNEKYNIFINNVSIMFENCFPLKV
FT                 TRIKQKSIIKPWITQGIKISCKTKRKMYLSAKSSCNDDDLAKYKEYCKILK
FT                 KVIQTSKQMHYEKKIAKSXNKIKAIWDIVKEETGRNRKEQEQIALKVDDTL
FT                 VTDGHSVANLFNKYFISVTDSMGLSGSVNNALEYLKLAFTNNFRNMNMSLT
FT                 SPQEITSIIKSLKTKHSSGYDEISTKLIKACSCELSTILSYLCNQSIITGT
FT                 FPDWLKYADIKPLFKKGDKEIPSNYRPISLLPAFSKILEKVMYKQLLNHLT
FT                 TNDILSRTQFGFLKGSDIEKAIYTYSENVLNSLDNKLQAAGIFCDLSKAFD
FT                 CVNHNILLSKLEFYGVTGIAAKWFKSYLANRKQRVSVQGTSELSQQSSSDW
FT                 EEITCGVPQGSILGPLLFLVYINDLSSVTLPEAEFVLFADDTSIAINSMSS
FT                 LVLERSANDIFININKWFKANSLTLNFEKTHYMQFRTCKRFPSSICIKYEE
FT                 EQIEEVDSIKFLGLQLDNKFSWEEHTTELQKRLNKSVFAIRVVSDIGDIKI
FT                 KKLAYFAYFHSIMSYGIIFWGNSSSQAKVFRVQKRVIRIICGVNSRTSCRS
FT                 LFKELGILTTASQYIYSLMKFVINNISLFPTNSSVHTYNTRNKNDLHKDLK
FT                 ALTLVQKGVHYSGTHIFNNLPTTIKKFSYK"
XX
SQ   Sequence 4795 BP; 1654 A; 777 C; 959 G; 1404 T; 1 other;
     ttggtaacac tgcgcccgcg cgaacgtttg agtatttgct ccagtaaata attacaaaaa        60
     tcgttgtttt taagctatat ttaatcgttt cagttggtat aaatataagt gttgttacat       120
     tagtggaagt gttagcgtag tgttaaataa ggaaaacggt gtaaaaagtt tatttttctt       180
     ctcgcgcctt agcacgtatt tgtaggccta atttaacgcg cgcgaatcgt tgtaaacagt       240
     gactaaaatt atatctaatt acccattctt ctatttttca ccgctgcata tagtagttag       300
     gatttataaa gtctatcaga caaaaaagta aatttcgtga tttagcaaaa gtgtgtatag       360
     taatccgtgt ttataggcct aaattttgtt ttcgtgagcg tgtttttagg cctaattttt       420
     gttttcgtga gcgagtttct tttatccagt gccctttcag ttaattatat ttgcgtgaac       480
     agattttagt gtctcttggt gtaactttca cgttttagtc agtacttaat caagttttta       540
     cgatttctat ttttaccatg ggtgagaagt gtgtgacatg ccgtaggatc gttagttccg       600
     gggtgtggtg tgatagttgt agtggtttct ttcattgggg cgaatgtagt ggcgtgggaa       660
     atggggacat aaatgaggct caccagtggt tttgtaggat ctgcaataga gataggaaaa       720
     taatggaaca ggaggggaaa attgcagctc ttcaagctga attagataag gcaagggaga       780
     ctctgagcag gttaaggagg gagaagggtg aacagcggtg ggaagtggca acaggtaaca       840
     gggggaacag gcttaggaca gtttcagaca gctttgtcat taatgtgaaa aatagatttg       900
     acctgttgcc tcagtcagaa tcggatgagc ctcatgtagc tgaagctgta gaaaggacac       960
     aacaaacttt caagaaggat ttgaaaaagg tagggaaaac tgtgaaaaga aagaaagtct      1020
     tgttgttagg tagctcccat ggtagaggtg ttggccaact actgcaggaa gagctaggac      1080
     cagagtacca ggtcacaaac tttttcaaac caaatgcggg cctgggtcag gtaacagagg      1140
     atataggttc tttatgtaaa gatttcacaa tggaggatac cgtggttata gtgggtggtc      1200
     cgggaaacag cattgacaga aactgtgaat attctataga gtgtgacctg gtgaagatat      1260
     catcggcaac gaagcatact agtgtggggt ttgtatctgt cttgagtcgc catgatcggc      1320
     ctcatttgaa ctcttctgtc aggagagtaa acttggagtt ggaacggcta ctcatgtcag      1380
     atatggggtc ccatattggt ttgattcctg tggatgatat ctgtaggtgg gactacacta      1440
     ggcatggcct tcacctcaac aggaaaggga agggaaaact gtctgggttg attgcaagta      1500
     acttacgggg agggggggca ctgtcacaaa tggtaaaata ccagtggtta caggtgtcag      1560
     agggatgcct tttttaggat agggaggggg gaaagaaaac cagttttgag agagcttgga      1620
     agacaccctc agtttggaaa aacagataaa caggagatag attttagcaa acaatgttta      1680
     acagaaagta ctcagaaact tccagtaaat cttagtcaaa ccgttagtat gcaatatcag      1740
     ttatctttat tacatcaaaa tattccagga ctcagaaata aacttgatga actactcatt      1800
     tgtattgatg aaatagattc ctctaaccca attgacataa tttgcctctc tgaacatcat      1860
     gtggccactg gtatagatat gttaaacatt ccaggattta atttagcttc acacttctgt      1920
     agagtagata tggagggagg aggagttgcc acattcatta aaaactgcta taaattcaag      1980
     aatattgata taaataaatt ctgtctagag cagcatttag aagcttgtgc aacagaagta      2040
     gaattccata acagatgcta tataatagta actatttacc gagcacctgc aggaaattat      2100
     aatctattcc taaatcatct agaagctcta ttgggttatt taacaggaag aaataaagaa      2160
     atcctggttg ctggtgactt taatacagat tttcttatgc agtcctccag taaacattta      2220
     ttgcagtcag taacattgtc tttcaatcta actcatactg taaactttcc aactaggata      2280
     actaaatcat ctaggacagc cattgataat atttttatag acaaatcaaa ggaacaaaat      2340
     cacatcataa aaccaataat taatggccta tcagatcatg atatgcagct ccttctttta      2400
     ggtacagatt ctaagcagat tatgaagact gctaaatcta catacaggag agtagtcaac      2460
     ccaccaaaaa ttgagaattt tagaaaactg ctcaaaaaca tgaactggaa agatgtatat      2520
     agtgctcatg gcatgaatga aaaatataac atattcatta ataatgtcag tatcatgttt      2580
     gaaaactgtt ttcctctaaa agtaactcga attaaacaga agtctataat aaaaccatgg      2640
     attacacaag gaataaagat ttcatgtaag acaaaaagga aaatgtatct atcagccaag      2700
     agtagttgca atgatgatga cttagctaaa tataaggaat actgtaaaat attaaaaaaa      2760
     gtaattcaga catctaaaca aatgcactat gagaaaaaga tagcaaaatc agamaacaaa      2820
     ataaaagcaa tatgggatat agtgaaagag gagactggta gaaacagaaa ggaacaggag      2880
     cagatagcat taaaagtaga tgatacatta gtaactgatg ggcatagtgt ggcaaatcta      2940
     tttaacaagt actttatatc tgttactgat agtatgggat tgtcagggtc agtaaataat      3000
     gcccttgaat atttgaaact agcatttaca aataacttca ggaacatgaa tatgtcactc      3060
     acttcaccac aagaaataac ttccataata aaatctttaa aaacaaagca ttctagtggt      3120
     tacgatgaaa tatcaacaaa gttaattaaa gcatgctctt gtgaacttag cacaatttta      3180
     agttatttgt gtaaccagtc tattataact ggaacatttc ctgattggtt aaaatatgcg      3240
     gatattaaac ctctattcaa gaaaggggat aaagagatac catcaaacta cagaccgatt      3300
     tcacttttgc cggcattctc aaaaattcta gaaaaggtaa tgtacaagca gcttctcaac      3360
     cacctaacca caaatgacat attgtccaga acacagtttg gatttctgaa aggttccgat      3420
     atcgagaagg ctatttacac ctacagtgag aatgtactta attcattaga taataaatta      3480
     caagcagcag gtattttctg tgatttatca aaggcatttg attgtgtgaa ccataacatc      3540
     cttttaagta aattagaatt ctatggtgtc acgggaattg ctgcaaaatg gttcaagtcg      3600
     taccttgcta acaggaaaca aagggtgtca gtgcaaggga ctagtgaatt aagccaacag      3660
     tcatcatcag attgggaaga aattacatgt ggtgtcccac aaggatccat cttagggcca      3720
     ttgctttttc ttgtgtacat taatgacctc tcatcagtta cactgccaga agcagagttc      3780
     gttttgtttg cagatgatac aagtattgca ataaatagca tgtcgagctt agttttagaa      3840
     aggtctgcta atgatatttt cattaacatt aataaatggt ttaaagccaa ctcattgaca      3900
     ttaaactttg aaaagactca ctacatgcag ttcagaacat gtaagagatt cccatccagt      3960
     atatgcataa agtatgaaga agagcagata gaagaggttg acagtataaa attcctggga      4020
     ttacagcttg ataataaatt cagttgggag gagcacacca cagaactgca gaaacgactt      4080
     aacaaatctg tatttgcaat acgagtggta tcagacatag gagacataaa aataaaaaag      4140
     cttgcatact ttgcttactt tcattccata atgtcatatg gtataatatt ttggggtaac      4200
     tcttcaagtc aagcaaaagt tttcagagtc caaaagcgtg taatacgtat tatttgtggt      4260
     gtaaattcac ggacatcctg cagaagcctc ttcaaagaac tgggtatatt aactactgcc      4320
     tctcagtata tttattcctt aatgaaattt gtcataaata atatatccct tttcccaaca      4380
     aacagctcag ttcataccta caatactagg aacaaaaatg atctacacaa ggacttaaaa      4440
     gcacttactt tagttcaaaa aggggtccac tactcaggaa cacacatttt caataattta      4500
     ccaacaacca taaaaaaatt tagctacaaa taaagatcag tttaagagga gcctaaaaga      4560
     ctttctagtg gccaactcct tctactccac tgacgaattc ttaaatagaa ccaaatgatg      4620
     catgtatctg tattcatact attagtatta ttatattatc agcttgtaaa aagtgtatgt      4680
     acctgtatta gtaatattat attatcaact tgtaaaaaaa atgacatgtt ccacatccac      4740
     gaggatcacc tcaacacgga tctatggaac gaaccaacta atctaatcta atcta           4795
//
ID   Daphne-1_BTa repbase;    DNA;    INV; 4864 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4864
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 620-620 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1312
FT                 /product="Daphne-1_BTa_1p"
FT                 /translation="MMRTPDSAKTIQKSKPSLKAGKKSDTKEDLCGKCKKK
FT                 VLKDEPGIQCERCDKWYHTKCIEMSARVYDLLSTSEAEWKCTSCSVSQIKP
FT                 GDTNGLIQLMLQKFTNLEVTITAVTDIIKEFNDLKACCEELKDRNQALEEK
FT                 CSELSDEITLMKGELRLVNAETSRRAQYDLKNNLIITGIPEQKEEKLDKIL
FT                 LKLGSDLGVRINLNEVLAMHRLKENPYSKESGQPRELLVKFLRYPTKEAFL
FT                 NKFKLKYRNNKRVLASETLVQGTNKVVALRDHLTPKNKFLYRKALRLRDEG
FT                 KLHFAWIKKGEVLVKAKGKTHKIVDAEDLAKFREKLPPLEQQSNVHNVNDQ
FT                 NVDTNLKNCEKSETKESKPDDPNPPPAHSIETNQV"
FT   CDS           1581..4313
FT                 /product="Daphne-1_BTa_2p"
FT                 /translation="MVNIFHVNIKSLLKNKNERIEDLELLLSSMKAKFDVL
FT                 ICTETWLKKKKSHLAKMEGYQAVHALATRNRADGVXMFIKEGMAYEIQTVK
FT                 YEGCSGLSVKIKLDHEEYFVTGIYRSPSFKDEKVFINWLRGFLGKMKQKNH
FT                 IIAGDFNFDLLDPNENVREYTEVLVESNYISLINEPTRPNLISGKDSCLDH
FT                 IHVRLKLQGISCNSEVIKADITDHYPVVLYLSSTKKNGAQKLKDSPWIEKL
FT                 DYKKAEMLMSEVNWKNVLDCNTVNLAMEEFYRSIQYVVEKSSMKIKITNKN
FT                 KKLKPWMTVGILKSVRERNRRHRAWVKDRGNLDLKEYYTRYRNMVVGIVRK
FT                 AKDNYYRTKISNAEKNPKKFWEIVNNLAGRGKQKNENQADITANQLNQYFA
FT                 TVGEKLAEKIPINDNKKDASTINKTRRNENSIFLAPVDKYEVERIIGELKL
FT                 KKSSGSDNVTIILLKYCSRSISTPLAHLINLSFTQGLFPDKLKEATVTPVY
FT                 KNKGSRDEPCNYRPLSVLSNLSKIFEKTLKQRLVSFLIINKIIPTNQFGFQ
FT                 KNKNTVQAVAKLIDKVIQHLENKEKCALLLLDVTKAFDSVSHKILLSKLEY
FT                 IGVRGVALDLFKSYLSGRTQRVKFRDLSEEMEVGWGVPQGSVLGPILFIIF
FT                 TIDLCSIKLKNCYISAFADDTSTLFNEKSWKTLNDTVNQGLNQVIKPWFEE
FT                 NKLTLNLSKIICIPFSTNYDGVEELKIRFHHCNANQNCNCEYLKLEHQAEY
FT                 LGIMLDRGLTWSEHVKKIEGQLSKVIYSIIFLKRFLSLDSLRIVFMSFFQS
FT                 VLNYGIAVYGGASSNILKPILRLERRAIKTILNLPQTYPSAELYDLLNVKG
FT                 FHELYQRELKRLTPLFQSEPLPQREIKYEIRNPSQVIVQQPRLEVSKRNVG
FT                 YTVKSII"
XX
SQ   Sequence 4864 BP; 1871 A; 808 C; 942 G; 1242 T; 1 other;
     gctgaaagtt catgaaaagt tttaaaagta agccccttat gttctaattg aaccataatg        60
     cattggtttt ggtgacagaa ctgcaaattt gttcactgcg agctacacag catgcaaaca       120
     taacctatac aacaagaaca aagggtaata gccaataata gtgataaatc attgcaatat       180
     gatgcgtaca ccagattctg ccaaaactat ccaaaaatcc aaaccttctc tgaaagcagg       240
     aaagaaatct gacaccaaag aagatttatg cggaaagtgc aagaaaaagg tgctaaaaga       300
     cgaaccgggg atccaatgtg aaaggtgtga taagtggtat cacacgaagt gcatagagat       360
     gtccgcaaga gtatatgacc ttctatcaac aagtgaagct gagtggaagt gtaccagttg       420
     ctcagtgtcc caaatcaaac ctggcgacac aaatggactt attcagctca tgctgcaaaa       480
     attcaccaac ctggaagtta cgatcactgc agttacggac atcatcaaag aattcaacga       540
     tcttaaggcg tgttgtgaag aactaaaaga cagaaatcaa gcgctggaag agaagtgctc       600
     ggagcttagt gatgaaataa ccctgatgaa aggagaactt aggttagtaa atgcagaaac       660
     aagccggagg gctcaatacg atcttaaaaa taatctaatt ataacaggaa tccctgagca       720
     aaaggaggaa aaactagata aaattctttt gaaattagga tcagatctgg gagtgaggat       780
     taacctaaat gaggtgttag caatgcatag gcttaaagaa aacccatata gtaaagaaag       840
     tgggcaacct agggagttgc ttgttaaatt tctaagatac cctacaaaag aagcattcct       900
     aaataaattc aagctaaaat acagaaataa caaaagagta ttagcatcag agaccttagt       960
     gcagggcact aataaggtag tagcgttaag agaccatctc actcctaaaa acaaattcct      1020
     ttacagaaaa gcgcttagat taagagatga agggaagctt cacttcgcct ggattaaaaa      1080
     aggtgaagta ctggttaaag caaaaggtaa gacccacaaa atagtagatg cagaagacct      1140
     tgctaaattt agggaaaaac tcccgccact cgaacagcag tctaatgtgc ataatgtaaa      1200
     tgatcaaaat gtagatacta atctcaaaaa ctgtgaaaag agtgaaacaa aagaaagtaa      1260
     accagatgat cctaaccccc cacctgccca ctcaatcgaa actaatcagg tatgacaaaa      1320
     ttgtcaatct taacggagga taggaaaatg tatgcaaatc agtagtgtca tactctgtga      1380
     ttccctatat aatactctgt aatcccctaa atgtgataga aaagtgagca aattatgtag      1440
     caagtaaata tttagaaata gaaaatagat tatagttctg taacaaacca atgtacgaaa      1500
     ttgtagaaat gaaatttgta aaaatgaaaa aacataccaa atactaatta aggcaaaacg      1560
     tagtattcag aaatacagaa atggtaaata tttttcatgt taatatcaaa tctctattga      1620
     aaaataagaa tgaaaggatt gaagatctag agctcctact atccagtatg aaagcaaaat      1680
     ttgatgtatt aatttgcact gaaacatggc tgaaaaaaaa gaaaagccac ctagcaaaaa      1740
     tggagggtta ccaagccgta catgctctag caactaggaa cagagcggac ggagtctsaa      1800
     tgtttattaa agaaggaatg gcatatgaga tccaaacagt aaaatatgaa gggtgctcag      1860
     gactctcagt taaaattaaa ctagatcacg aagaatattt cgtgactgga atctatcgtt      1920
     ccccctcatt taaagacgaa aaagtattta taaattggct gagagggttc ctaggaaaaa      1980
     tgaagcaaaa aaatcatata attgcaggag acttcaattt tgacctcttg gacccaaatg      2040
     aaaatgttag agaatataca gaagtgcttg ttgaaagtaa ttacataagt ctaataaatg      2100
     aaccaactag accaaatcta atatcaggaa aagactcgtg cttggatcat atacatgtaa      2160
     gattgaaact tcaaggaatt tcttgtaact ctgaagttat aaaagcagac ataactgatc      2220
     attaccctgt agtactttac ttaagtagta caaagaaaaa tggagcccag aaattgaagg      2280
     acagcccgtg gatagaaaaa ctagattata agaaagcaga aatgttaatg agtgaagtaa      2340
     attggaaaaa tgtactggat tgtaatactg ttaatttagc aatggaagag ttctatagaa      2400
     gcatacagta tgtagtggaa aaaagtagta tgaaaattaa gataacaaac aagaataaaa      2460
     aactcaagcc ttggatgact gtaggaattc taaaaagcgt tagagaacgt aataggaggc      2520
     atagagcttg ggtgaaggat agaggaaatc ttgatttgaa agaatattac actcggtata      2580
     gaaacatggt agtagggata gttcggaaag ccaaagacaa ctactacaga accaaaataa      2640
     gtaatgcaga gaaaaaccca aaaaaatttt gggaaatagt aaacaacttg gcaggtcgtg      2700
     gaaaacagaa aaatgaaaac caagcagaca tcactgcaaa ccaacttaat cagtattttg      2760
     ccacagttgg ggaaaaacta gcagaaaaga tcccgataaa tgacaataag aaggacgcat      2820
     caacgataaa taaaacacga cgaaatgaaa attcgatttt cctggctcca gtagataaat      2880
     acgaggtgga aagaatcata ggagagttaa aattaaagaa aagctctgga tcagataacg      2940
     taactataat attactgaaa tattgctcca gaagtatttc tacacctcta gcacatctta      3000
     ttaacctgtc cttcacccag ggcctatttc cagacaaact caaggaggcg acagtaaccc      3060
     cagtctataa aaataaagga tctagagatg aaccatgcaa ctacaggcct ctttcagtcc      3120
     tatctaattt atcaaaaatt tttgaaaaaa cactaaaaca aagactggtc agttttttga      3180
     ttataaataa aataatacca acaaatcagt ttggatttca aaaaaataag aacacagtcc      3240
     aggccgtagc aaaactgatt gataaagtga tacaacacct agaaaataaa gagaaatgtg      3300
     cgctcctact actagatgta accaaagcct ttgactcagt gtcacataaa attttactat      3360
     ctaagttaga gtatataggt gttagagggg tagctttaga tctatttaag agctatttat      3420
     ctgggcgcac tcagagagtg aaatttagag atttaagtga ggaaatggaa gtgggatggg      3480
     gagttcccca aggatcggta ttggggccga tcctctttat aatctttaca atagatcttt      3540
     gcagcattaa actaaaaaat tgctacatat cagctttcgc tgatgatacc tcaacgctgt      3600
     tcaacgaaaa atcatggaaa acattaaatg acacggtaaa ccaggggtta aaccaggtaa      3660
     ttaaaccctg gtttgaagaa aacaaactaa cgctaaacct gtcgaaaatt atttgtattc      3720
     cattctcaac caactatgat ggggttgaag agctgaaaat aagattccac cattgtaatg      3780
     caaatcaaaa ttgtaactgc gagtatctca aactagaaca tcaagcagaa tatctaggga      3840
     taatgttaga cagaggatta acatggagcg agcatgtcaa aaaaattgaa ggacagctca      3900
     gcaaagtcat atactccatc atctttctga aacgtttcct tagcctggac tctctgcgga      3960
     tagtctttat gtccttcttt cagtctgttc tcaattatgg catagcagtc tatggaggcg      4020
     caagtagcaa catcctcaag ccaatcttaa gacttgaaag aagggcaata aagactatcc      4080
     taaacctacc ccagacctat ccatcggcag aattatacga cttgttgaat gttaaaggtt      4140
     tccatgaact ttaccaaagg gagctgaaaa gattaacacc gcttttccaa tccgagccac      4200
     tccctcaaag agaaataaaa tatgagatca gaaatccgag ccaagtaata gtacagcaac      4260
     caagactcga agtctcaaaa agaaatgtgg ggtatacagt caagtcaatc atctaagtta      4320
     ccaaatcaat cctagggtaa gctcacctat agcaaataat aaattgtatt ttattttaca      4380
     aaacagttgg attgcgcttg gcaggggggg ggctggagcg tcccagtgtt gctagatttt      4440
     ggaaaagtga ttctggctaa gtctcaagtt gcacaatcat ggcgacactg agattctctt      4500
     ggttcctcct tgcaatgtgc aatccaagtg ttttgtactc atttctgtaa catatattgt      4560
     tgtgtttggt atgtgaaagc agaggaaata ggaacgaggg ccttgccaac ctgtgaatct      4620
     atttagctaa tgtaattaga taatgtaatt agttgttctt ttttatataa aaaaaaaatg      4680
     gatacaaatt tctatattgt attcaacatt atgtttgctt aaaatttaaa cttaaattaa      4740
     atgtatgtac ctatttataa cagcctcatc cacacgagtc acctcctgga tgagggaagt      4800
     tgattatgta tttttattgt attgtgtaaa ttgaagaatt aataaattga attgaattga      4860
     attg                                                                   4864
//
ID   Daphne-1_Hmel repbase;    DNA;    INV; 4587 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4587
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1332..4331
FT                 /product="Daphne-1_Hmel_1p"
FT                 /translation="HFSTFKLISQTTEVATSSSNLLLNIHLIQPALQLNYN
FT                 NNAHCTSSQYPCKNNNKNVNSIRLVHQNICCLTGGKQLELELFMNSEEISI
FT                 LCITEHWLKVNQLMFNFRNHRVGSSFCRINTIHGGSLIILNKNLKFKERKD
FT                 IVSLSVECSIELACVQLEQFIVICVYRPPSANLKLFLEVMDEALSKLTKSG
FT                 KPLLVCGDFNVNILESLSPTINLLSLFKSHNLLNLFMEPTRITPTTSTCID
FT                 NIFTDIIPCYKSIINKLDSDHSGQLVEFYSKKKQVAKKRIAFVPVTXSRLE
FT                 RMRVSLLTNLLVLDITLPPNSLYNSFFYSFINKFHSIFTPKEITITDSPIF
FT                 GDWATAGIYKSRETLYMLYYEKQFNSGEEFKEYLKSYSKIFKSVCKIAKSL
FT                 FIKTKIRNSNNKIEATWKVVNAETGRTRVKDSNFKLSIDGHIVDSDLEVAI
FT                 AFEKFFSTFPVSLTNDLGSSTTIAESLIKDNVPEFYNGFVFRHVNYSDISV
FT                 AFKSISMKKTADLWGVSVNIINSLIDILIPDLVTIFNRCIDCGVFPDLMKY
FT                 SKITPLFKSGSTQDPTNFRPISVLPTFSKIFEKLILSQLLTYFNKNKLLHT
FT                 GQFGFTRGRSTSDAGVKLLESVFAAWEESRDAFGVFCDLSKAFDCVQHKTL
FT                 IRKLHHYGIRGIALDLLTSYLSDRIQKVNVNGKLSHGSPVALGVPQGSILG
FT                 PFLFLLYINDLPHLMRDICEMVLFADDTSLVFKVNRRQLEIDDVNNALSRI
FT                 LHWFSANNLLLNSSKTKCIRFFTKNVQQVETRVLMNNKELKVVNETVFLGI
FT                 TLDAKLQWGPHIETLSGRLSSAAYAVRKIRQLTDVDTARLVYFSYFHSIMS
FT                 YGLLLWGSAADIDTIFVLQKRAVRAVYKMGPRESLRNKFKDFNILTLHSQY
FT                 IYDNLVYVHKNINKFNKNSDLHQXNLRNKNKLAVPFSRLHKVSHSFVGQSI
FT                 HFYNKLPNDVVNLSLNKFKKVVKHRLCQKAYYSVKDYVRDKDVWK"
XX
SQ   Sequence 4587 BP; 1506 A; 743 C; 797 G; 1530 T; 11 other;
     tggagcagga gctgcaagag gctcacacac tcatcactaa gctacaggag gatgctcaga        60
     atgctaccgt gttacataat attagcttgt ataatgagtt agttgagagt gccccacagt       120
     tggtttctcc tgtgttggac agacatagtc actcaattat tgatctcacc aagdatgaca       180
     catcgttdtt caatcttaaa aaaggatcaa gtctgcctca ctgcagtaga aacaaactaa       240
     aaaaatacat aaaaatcaat aagtttattg tcaaaactaa aaaattaata aaacaacata       300
     gttatatgtc caagtgtgca aaattaagta aggagaaatt ggaactatat gatgatttag       360
     aaatgtgcac aaaaaaacta rataagtgta ggttaaatta tgaagctgat acacaagcac       420
     taacaaagtg aaattaatta tttaaaagac tcccttgata tacttaataa aaagtatgtc       480
     aattcattga acgaaataca agagtattcc aaggygatgg acaatcttat tacactgtcc       540
     acaaataaca ctgaacgttt tgattcttta atcaacaatc actcttgtga ttgtgccygt       600
     tcatcacagc aatcrcctgc aagtactccg gtgtgtgtcc ccttgaccga ccccttgtgt       660
     gacagccttc ataataatag tagtagtagg ttcaggtcac agcagtcatt tggtgcatca       720
     attcatgaac ctagttcatt agttaatgca caaaacatag ttttatttag tgatgatatt       780
     ggaaggaata tgggttcaat tttgaattct tgtttaccgg gacagtcagc tgttagtttt       840
     tgttatccgt cagcatcctt tgaagttctc atgcagagaa gtttaagtta taaatttaat       900
     aagtgtgaca aacttgttat attatcaagt aataggggaa atttaaacaa aaaacagtta       960
     aatgastatt gtaagtcatt attaaactta gatataagta aaataatttt gtttacattt      1020
     ccttattgta aaaatcagcc agaagcggaa aataattaca gatataagct aaactctact      1080
     ctgcacacaa taagcacata taatgacaaa tttcatttaa ttgacactaa caaaatagtt      1140
     agtaaaactt tatttttgac tcaaagtaaa tattattttg gtcataggtt taagagacag      1200
     atagcttctg tgctatccta ttattttgac ttatcagcca agaacttggc tactacttca      1260
     actgcttcta ttgagcagac tgacattcca atttattctg acattatgtc taataattta      1320
     cactctgttg acatttctca acatttaaat taatttctca gacaacagag gtagcaacct      1380
     ctagctctaa tttattatta aatatccatt tgatccagcc agctttacaa ttaaattaca      1440
     ataataacgc acattgcaca tcatcacaat atccatgcaa aaataataat aaaaatgtta      1500
     attctattag attagttcat cagaacatct gttgcttgac ggggggcaag cagctagagc      1560
     tggaattatt catgaactcg gaggaaatta gtattttgtg tattactgaa cattggttaa      1620
     aggtgaacca gctcatgttt aatttcagaa accaccgggt aggaagctca ttctgcagaa      1680
     tcaacacaat acacgggggg tcgcttatwa tattaaacaa gaaccttaag ttcaaggaac      1740
     ggaaagatat tgtgtccctt tctgtagaat gttctatcga attagcgtgt gttcaattag      1800
     agcaattcat tgttatatgt gtatacagac ctccctccgc caatttaaaa ttatttttag      1860
     aagtaatgga tgaggcctta agcaaactta ccaagtcggg taagcctttg ttagtgtgtg      1920
     gggactttaa tgttaatatt ttggaaagtt taagtcccac cattaattta ttaagtcttt      1980
     ttaagtcaca caatttactt aatttattta tggagccaac cagaataact cctacgacta      2040
     gtacttgtat agataacata tttactgaca ttattccatg ctacaaaagc attattaata      2100
     aattggattc tgaccactct ggtcagctag tagaattcta tagtaagaaa aaacaggtgg      2160
     ctaagaaaag aattgctttt gtacctgtca cagytagtcg tttggaacgt atgagagtta      2220
     gtttactaac taatttacta gttttagata taactttacc tcccaattct ttgtacaatt      2280
     ctttttttta ctcttttatt aataaatttc attcaatatt tactcccaaa gagattacaa      2340
     ttactgatag tcctatcttt ggtgactggg ccacagcagg tatttataag agtagggaga      2400
     cgctgtatat gttatattat gaaaaacagt ttaatagtgg tgaagagttt aaagagtact      2460
     taaaatctta ctctaaaatt ttcaaaagtg tttgcaaaat tgctaaatct ttatttatta      2520
     aaacaaaaat cagaaatagt aataataaaa ttgaagccac ttggaaggtt gttaatgccg      2580
     agactgggag aactagggtg aaagattcta attttaaact tagtattgac ggtcacattg      2640
     ttgattccga tttggaagtg gccattgcat ttgaaaagtt tttctctact ttcccagtca      2700
     gtctaacaaa cgatttaggt tcttccacca ctattgcaga atcgttaatt aaagacaatg      2760
     ttcccgaatt ttataatggt ttcgttttcc gtcatgtaaa ttattcagac attagtgtag      2820
     ctttcaaatc aattagtatg aaaaagacag ccgacttgtg gggtgtctca gttaatatca      2880
     taaattcttt aattgatatt ttgattcctg atttagttac aatttttaat agatgtattg      2940
     attgtggagt gtttcctgat ttgatgaaat atagtaaaat aactccattg tttaaatcag      3000
     gtagtacgca agaccccaca aatttcagac cgatttcagt actacctacg tttagtaaaa      3060
     tttttgaaaa gctgatactc agtcagcttc ttacttattt taataaaaat aaattactgc      3120
     acacaggtca atttggtttc actcgtggaa ggtcaacatc tgatgctggg gtcaaattat      3180
     tagagagtgt attcgcggct tgggaggagt cacgtgatgc ctttggggtg ttttgtgact      3240
     tgtccaaagc atttgattgt gtgcagcata aaactcttat caggaagcta caccactatg      3300
     gtataagagg cattgctttg gatcttctca cttcttattt aagtgatagg attcaaaagg      3360
     taaatgtcaa cgggaaacta tcacacgggt cacctgtagc attgggggtg ccacaaggct      3420
     ctattctggg tccgtttttg ttccttttgt acattaatga cttacctcac cttatgagag      3480
     atatctgtga aatggtgttg tttgcagatg atacatcttt agtttttaag gttaatagac      3540
     ggcaattgga aattgacgat gtaaacaatg ctctttctag gatattacac tggtttagtg      3600
     ccaataactt gcttttaaat agtagtaaaa ctaaatgtat caggttcttt actaagaatg      3660
     ttcaacaagt agaaaccagg gttttgatga acaataagga acttaaagta gttaatgaaa      3720
     ctgttttctt aggtataaca ttagatgcta agttacaatg gggtccgcat atagaaactt      3780
     tatctggtag acttagttcg gcagcgtatg ctgtccgtaa gattcgtcaa ctgaccgatg      3840
     ttgacaccgc gcgtttagta tacttcagct attttcatag cattatgtct tacggcctat      3900
     tactttgggg yagtgccgct gacatagata ccatttttgt gctccaaaaa cgggctgtcc      3960
     gagcagtcta taaaatgggt ccacgggagt cactaaggaa taaattcaaa gactttaaca      4020
     tcctcacact acactcccaa tatatttacg acaacttagt atatgtgcat aagaatatta      4080
     ataaatttaa taaaaacagt gacctccatc aayataattt aagaaataaa aataagcttg      4140
     ctgtgccctt ctctaggctc cataaagtgt ctcactcatt cgtaggtcaa agtatacact      4200
     tttataacaa acttccaaac gacgtggtta atttatcact gaacaaattt aaaaaagtgg      4260
     taaagcacag gctctgccaa aaagcttatt actctgttaa agattatgtt cgcgataaag      4320
     atgtttggaa atgagttgct ctatttctaa gttaaaattg ttaattgtga tttataacaa      4380
     atgttggcat ttaaaaagag tggccatgag tttctttgcc tgtatcttct catgagctca      4440
     accatttgaa cgggcttttt tcaagtcaaa attgcacatt ttttttggtt attttgtttt      4500
     gcattttttt atcttttatg acatgtccaa gtgaatgtta agcattttta tggaataaag      4560
     atattttgac tttgactttg actttga                                          4587
//
ID   Daphne-1_HMM repbase;    DNA;    INV; 3729 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3729
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2786-2786 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. likely 3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1031..3727
FT                 /product="Daphne-1_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDSLNILSDIEQLEVSESRTCSPEECKLYLSNTATSL
FT                 KIIQLNIRSISHNFDHFQALLLRIQIPLDIIVLTECWLSRCPLVPILSGYT
FT                 SHTSDYRLQNDGVVIYIKQNITCSVEIPNLADANCLIMKYKEQFALVAIYR
FT                 SPSSRNPDIFTKSLNDILNSLKHFQNIAITGDININIAPNSNDSALDQYLN
FT                 TLMFHGLMPAHTLPTRNNNCLDHVILKAKSKATTLVLDTCITDHLPVILSY
FT                 TINIQSTQMKQNTKVLDIKACLAHLAETDFSPVLTSQNPEEAASLMVHTIS
FT                 DIVNSHTRTVVTSSRKRILKPWVTPGLLRCMKNRDRLYLKSKKDPENNIAY
FT                 VTYNRYKNFCNNLLKNVKRQYERSQFQRVGKNPKATWDLIKKHGGMHKEQT
FT                 PCNHLLGTNTDPSVELNNINKYFANVGHNLASKIESMSEVTYHELDEIVPP
FT                 LTSMSVLATDCAEIDNIIVGLKNTSSTGWDDIPVSIVKQARPILVPILEHV
FT                 FNLCLLKGIFPDVFKIGLVIPIYKSGDRDSVQNYRPISILTTFSKILEKIV
FT                 NVRLINYLNYNNVLANNQFGFRAGKSTEDAVLSLTDTITLNFNKHLKSVAI
FT                 FLDLTKAFDTVPISKLLKKLERIGIRGDVYNLFRSYFENRYQCVRVGSVIS
FT                 EREPLLFGVPQGSVLGPTLFLIYINDLCKLSIKNCKIITYADDTVLLVHGA
FT                 NWNSTQIHAESALSIVTHWLKRNLLTLNTDKTKCLTFAPNSASLPPTSFNL
FT                 VAHVPSCEAKSDCACMKIVCESKIKYLGVWIDNHLSWKEHLKVTTNRVRKL
FT                 MYLFKKLRSVLDFPTLKIIFFALVQSVAGYCIAAWGCAGKVKLLALERAHR
FT                 GVLKIMSFKPIWFPTSELYKEIKVLTIRKLFLLTTILRKHAELPYT"
FT   CDS           join(1..510,552..1028)
FT                 /product="Daphne-1_HMM_1p"
FT                 /translation="LESDHQANLDYIRALEDKLEKAECYNRATCIEIRSIP
FT                 APSHEFKSQLLNTVTNLGKLINVNIQPHEVRDVFRTQRKGSEHKPIIVDFT
FT                 SVIMKEKFIHTYKQFKKSSTLTTETLKXXGPTKPVYVSENLSAKTKRLFFL
FT                 TRDFAKTNNYKYSWTSHGKIYLRKPMAPLTILVPQXSNKRHCNFRSSXLRX
FT                 ENXFIPFSSCSPLLGNLVPLINNIFSSCMLKGLYISFNFACHVDLLYILHT
FT                 KLINNYLHPNTNHTTLHFHYTNILTAVKANFXXSYLLYIRLKXCTTLVLTP
FT                 VPVLLRLSVTVQGYDTCYIISCSFSHQIHLYDILAYY"
XX
SQ   Sequence 3729 BP; 1232 A; 787 C; 628 G; 1069 T; 13 other;
     ttggaatctg atcaccaagc aaacctcgac tacatccggg ccctagaaga taagttagaa        60
     aaggcagaat gctataatag ggctacgtgt atagaaatca ggagtattcc tgcaccgagt       120
     catgagttta agtcccaatt attaaataca gtgactaacc tcggcaaatt gataaatgtg       180
     aacattcaac cccatgaagt tagagacgtc ttccgcacac aacgtaaagg atcagaacac       240
     aagcccatca tcgttgactt tacaagtgtt ataatgaagg aaaaatttat tcatacgtac       300
     aaacagttca aaaagtcttc tacactaacc actgaaacac taaaaatkmc tggtccaaca       360
     aaaccggtat atgtatcaga aaatctttca gcaaaaacaa aaagattgtt tttcctgaca       420
     cgagacttcg caaagacgaa caattacaaa tacagctgga catctcatgg aaaaatctac       480
     ctacgtaaac cgatggcgcc cctcactatt taataaaaga agaaagcgac ctgggtaaac       540
     taccaaagtg actagttcct caawcttcaa ataaacgtca ctgcaacttt agatcatcgk       600
     ttttacgctm cgaaaacktc ttcataccat tttcaagctg ctcaccattg ctgggaaatc       660
     ttgtaccact aataaataat atttttagct cttgcatgtt aaagggctta tatatttcgt       720
     ttaactttgc atgtcatgta gatttattgt atatactcca cacgaaactc atcaacaact       780
     atcttcaccc aaacacaaat cacactacac ttcattttca ttatacaaat atactcacag       840
     cggtcaaagc taacttcgwa maaagttacc tgctgtatat tcgattaaag ktatgtacta       900
     ccttggtact aactcctgtt cctgtattgc tccgattatc agtaacagtt cagggttatg       960
     atacctgtta tataatctca tgctcgttta gtcaccagat ccacttgtat gacatattag      1020
     cttattatta atggacagct taaatatatt gagtgatatt gaacaactgg aagtctcgga      1080
     atcccgtact tgttctcctg aagaatgcaa actatactta agtaataccg cgacttcttt      1140
     aaaaattatt caacttaata tccgaagtat ttcacataat tttgaccact ttcaagcttt      1200
     attactaaga attcaaatcc cgttggacat tatagtttta accgagtgtt ggttaagccg      1260
     gtgtcctctc gtccctatat taagtggtta cacaagtcat acatcagatt accgtctaca      1320
     aaatgatggt gtggtaatat atataaagca aaacataacg tgtagcgtgg agataccgaa      1380
     tttggccgac gccaactgtc tgattatgaa atataaagaa cagttcgctc ttgtcgctat      1440
     ctatcgatcg ccatcttcta gaaaccctga tattttcacg aaatcgctaa atgatattct      1500
     aaattcctta aaacactttc aaaatatagc aatcaccggc gacataaata taaatatagc      1560
     acccaacagc aacgacagtg cccttgatca atatttaaac acgttaatgt ttcatggact      1620
     tatgcccgcg cacaccttgc ccactcggaa taataactgc ttagaccacg taattttaaa      1680
     agcgaagtcc aaagctacaa cgctagttct cgacacctgt attactgatc acttaccagt      1740
     aattctgagt tacactatta acatccaatc gactcaaatg aaacaaaaca ccaaagttct      1800
     agacattaag gcttgtttag ctcatttagc agaaaccgac ttcagccccg tattaacctc      1860
     tcagaaccct gaggaggcag cttcattaat ggtacatact atctctgata tcgtcaatag      1920
     tcatacacgc actgtagtca cttcaagccg gaaaagaata ttaaaacctt gggttactcc      1980
     tggtctactg cgctgcatga aaaatcgcga tagactgtac cttaaatcaa aaaaagaccc      2040
     tgaaaataat attgcatatg tgacttacaa tcggtacaag aacttttgca ataacttact      2100
     aaaaaatgtt aaacgacaat acgagcgcag ccaatttcag cgtgttggta aaaatccaaa      2160
     agctacatgg gatcttataa aaaaacatgg gggcatgcat aaagaacaaa cgccctgtaa      2220
     tcatctgtta ggtacaaata cagatccttc tgttgaatta aacaacataa acaaatattt      2280
     tgcgaatgta gggcataatc tagcttccaa gatagaatct atgagtgaag ttacttacca      2340
     cgaattagat gaaatcgttc cgcctttgac ttctatgtcc gttcttgcta ctgactgtgc      2400
     tgagatagat aatatcatcg ttggtctcaa aaatacatca tctactggat gggatgatat      2460
     accggtgtcg attgttaaac aggcaaggcc tatattggta ccaatactgg aacatgtttt      2520
     caacctgtgt ctcctgaagg gcatatttcc wgatgtcttt aagattgggc tagttatacc      2580
     gatatacaag agtggagata gggacagtgt ccagaattat agacccattt caatacttac      2640
     aaccttctct aaaatattgg aaaaaatagt caatgtcaga ttaataaatt atttaaatta      2700
     taataacgtt cttgcgaata atcagtttgg ttttagggct ggtaaatcca cggaggacgc      2760
     agtcttaagc ttaacagata ctatcacttt aaattttaac aagcacctta agtctgtggc      2820
     tatatttctg gaccttacga aagcctttga cactgtccct atttccaagc ttcttaaaaa      2880
     gcttgaacgc attggtatta gaggcgacgt gtacaattta tttagaagct attttgaaaa      2940
     ccgttatcag tgtgtaaggg tgggcagtgt catcagcgaa cgtgaaccct tgctttttgg      3000
     ggtgccgcag ggtagcgtct tgggaccaac cctgttttta atttacatta acgacctttg      3060
     caaattatct ataaaaaact gcaagataat aacatacgca gatgacactg ttctccttgt      3120
     gcacggggca aactggaata gcactcaaat tcatgccgag tcagctttgt ccatagtaac      3180
     acactggctt aagcggaatc tgctaaccct aaatacagac aagacaaagt gtcttacctt      3240
     tgctccaaac tcagcttccc tccctcctac atcatttaac ctggtcgctc acgtaccgtc      3300
     ttgtgaagca aaaagtgact gtgcctgtat gaagattgtt tgtgaatcca aaatcaaata      3360
     tctcggagtc tggattgaca atcatctttc ttggaaagaa cacttaaaag taaccacaaa      3420
     tagagtcaga aagcttatgt acctgttcaa aaagctgcgc tcggttctgg acttccctac      3480
     gcttaaaatc atattttttg ctctkgtaca gtcagtggct ggatactgta ttgcagcctg      3540
     gggctgcgcg ggtaaagtaa aactactcgc tctcgaaaga gcgcatagag gagttctaaa      3600
     aattatgtcc ttcaaaccaa tatggttccc cacatccgag ctatacaaag aaataaaagt      3660
     tttaacaata agaaaactkt ttttattaac aactatactt cgcaagcacg cagaactscc      3720
     ttatacaca                                                              3729
//
ID   Daphne-1_LMi repbase;    DNA;    INV; 2557 BP.
XX
AC   .
XX
DT   25-FEB-2014 (Rel. 19.11, Created)
DT   25-FEB-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2557
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3115-3115 (2014).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..2336
FT                 /product="Daphne-1_LMi_1p"
FT                 /translation="MQLLVLGIDSKQIMKTAKCTYRRVVNPPKIENFRKLL
FT                 KDMNWKDVYSANGMNEKYNVFINNVSIMFENCFPLKVTRIKQKSIIKPWIT
FT                 QGIKISCKTKRSMYLSAKSSCNDDDLTKYKEYCKILKKVIQVSKQMHYEKK
FT                 IATSGNQINTIWDIVKEETGRTRKEQEQVRLRVAETLVTDGHSVANLFNKY
FT                 FISVTDSMGLSGSVNNALEYLKLAFTNNFTHMNMSVTSPQEISSIIKSLKT
FT                 KNSSGYDEISTKLIKACSCELSTILSYLCNQSVITGTFPDWLKYADIKPLF
FT                 KKGDKEIPSNYRPISLLPAFSKIIEKVMYKQLLNHLTANGILSRTQFGFLK
FT                 GSDIEKAIYTFSENVLNSLDNKLQAAGIFCDLSKAFDCVNHNILLSKLEFY
FT                 GVTGNAAKWFKSYLTNRKQRVSVQVTSELGQQSSSGWEEITCGVPQGSILG
FT                 PLLFLVYINDLSSVTLPEAEFVLFADDTSIAIKSTSSIVIEKSANDIFMNI
FT                 NKWFKANSLSLNFEKTHYMQFRTCKRFPDSICIKYEEEQIEEVDRIKFLGL
FT                 QLDNKLSWEEHTTELQKRLNKSVFSIRVLSDIGDIKITKLAYFAYFHSLMS
FT                 YGIIFWGNSSSQSKVFRVQKRVIRIICGVNSRTSCRSLFKELSILTTASQY
FT                 IYSLMKFVINNISLFPTNSSVHTYNTRNKNDLHKDLKALTLVQKGVHYSGT
FT                 HIFNNLPSSIKNLATNKDQFKRNLKDFLVANSFYSISEFLNCTK"
XX
SQ   Sequence 2557 BP; 955 A; 412 C; 430 G; 760 T; 0 other;
     taactaaaac ctctaggaca gcaattgata atatttttat agacaaatca aaggaacaaa        60
     atcatatcat aaaaccaata ataaatggcc tgtcagatca tgatatgcag ctccttgttt       120
     taggtataga ttctaaacag attatgaaga ctgcaaaatg tacatacagg agagtagtca       180
     acccaccaaa aattgaaaat tttagaaaac tcctcaaaga catgaactgg aaagatgtat       240
     atagtgctaa tggcatgaat gaaaaatata atgtattcat taataatgtt agtatcatgt       300
     ttgaaaactg ttttcctcta aaagtaacgc gaattaaaca gaagtctata ataaaacctt       360
     ggattacaca aggaataaag atttcatgta agacaaaaag gagtatgtat ctatcagcca       420
     agagtagttg caatgatgat gatttaacta aatataagga atactgtaaa atattaaaaa       480
     aagttattca ggtatctaaa caaatgcact atgaaaagaa gatagcaaca tcaggaaacc       540
     aaataaatac aatatgggat atagtgaaag aagagactgg tagaaccaga aaggaacaag       600
     agcaggtacg gttaagagta gctgagacat tagtaactga tgggcatagt gtggcaaatc       660
     tatttaacaa gtactttata tccgttactg atagtatggg attgtctggg tcagtaaata       720
     atgcgcttga atatttgaaa ctagcattta caaataactt cacacacatg aatatgtcag       780
     tcacttcacc acaagaaata tcttccataa taaaatcttt aaaaacaaag aattccagtg       840
     gttacgatga aatatcaaca aagttaatta aagcgtgttc ttgtgaactt agcacaatct       900
     taagttattt gtgtaaccag tctgttataa cgggaacatt tcctgattgg ctaaaatatg       960
     cagatattaa acctctcttc aagaaggggg ataaagagat accatcaaac tacagaccca      1020
     tttcactttt gccagcattc tcaaaaatta tagaaaaggt aatgtacaag cagcttctca      1080
     accacttaac cgcaaatggc atattgtcta gaacacagtt tggatttctg aaaggttccg      1140
     atattgagaa ggctatttac actttcagtg agaatgtact taattcatta gataataaat      1200
     tgcaagcagc aggtattttc tgtgatttgt caaaggcatt tgattgtgtg aaccataaca      1260
     tccttttaag taaattagaa ttctatgggg tcacgggaaa tgctgcaaaa tggttcaagt      1320
     cgtacctcac taacaggaaa caaagggtgt cagtgcaagt gactagtgaa ttaggccaac      1380
     agtcatcatc gggttgggaa gaaattacat gtggtgtccc acaaggatcc atcttagggc      1440
     cattgctttt tcttgtgtac attaatgatc tctcatcagt tacactacca gaagcagagt      1500
     tcgttttgtt tgcagatgat acaagtattg caataaagag tacgtcaagt atagtgatag      1560
     aaaagtctgc taatgatatt ttcatgaaca ttaataaatg gtttaaagcc aactcattgt      1620
     cattaaactt tgaaaagacg cactacatgc agttcagaac atgtaagaga tttcctgaca      1680
     gcatatgcat taaatatgaa gaagagcaga tagaagaggt tgacagaatt aaattcctgg      1740
     gattacagct tgataataaa cttagttggg aggagcacac cacagaactg cagaaacgac      1800
     tcaacaaatc tgtattttca atacgagtgt tatcagacat aggagacata aaaataacaa      1860
     agcttgcata ctttgcttac tttcattcct taatgtcata tggtataata ttttggggta      1920
     actcttcaag tcagtcaaaa gtcttcagag tccaaaaacg tgtaatacgt attatttgtg      1980
     gagtaaattc acggacgtct tgtagaagcc tcttcaaaga actgagtata ttaactactg      2040
     cctctcagta tatttattcc ttaatgaaat ttgtcataaa taatatatcc cttttcccaa      2100
     caaacagctc agttcataca tacaatacta ggaataaaaa tgatctacac aaggacttaa      2160
     aagcacttac tttagttcaa aaaggggtcc actactcagg aacacacatt ttcaataatt      2220
     taccatcaag tataaaaaat ttagctacaa ataaagatca gtttaagagg aacctaaaag      2280
     actttctagt ggccaactcc ttctactcca ttagtgaatt tctaaattgt accaaatgat      2340
     gcatgcactc atactatatt agtattatta tattatcagc aaaaaaaacc taaaaattat      2400
     gtatctgtat tttattataa gtgtatgtat ttgtatttat attattagta ttatctgtta      2460
     ttcaacttgt aaattttgtt tcttgacatg ttccacatcc acgaggatcc cctcaatatg      2520
     gatctacgga acaaataaac taatctaatc taatcta                               2557
//
ID   Daphne-1_PPo repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-289
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3107-3107 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 289 BP; 85 A; 40 C; 55 G; 109 T; 0 other;
     ttacccctaa gtttaatagc gtgaaaatac atagcctggg gtgtgtcgta agtgtagtgc        60
     tttttgttaa agaaagaatt gtcctaaata tgtgccacag ggtggtgtgt ttttacgctt       120
     tatttatcat agcatagatt gtgcaagaat atcttacatt atgtgttaca cggaagagcg       180
     ggacttccta acacaagtgc ctattggtta cttaaaagga agtccctaca actgattgat       240
     ttgtaactta cttgatttaa taataaaaat tattttattt ttttttttt                   289
//
ID   Daphne-1_TCa repbase;    DNA;    INV; 3970 BP.
XX
AC   .
XX
DT   14-JUL-2009 (Rel. 14.07, Created)
DT   14-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Daphne non-LTR retrotransposon: a consensus sequence.
XX
KW   Crack; Non-LTR Retrotransposon; Transposable Element; Daphne;
KW   nonautonomous; Daphne-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3970
RA   Kapitonov V.V. and Jurka J.;
RT   "Daphne non-LTR retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(7), 1347-1347 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           377..961
FT                 /product="Daphne-1_TCa_1p"
FT                 /note="ORF1."
FT                 /translation="MIAGQSPPAHTVVDNKSAGRNKNEIKNKDKLNKVVFE
FT                 KDQLQAQSNTTATKIVENNKKSMPRHETPKNEDSVIEERKNDWKTITHKKL
FT                 DRKQQRNAVIGTHACDKIKTAPKKAFLYVSRLYPETKSEDLVSLLQNTFPE
FT                 VTCMKLDSKYPEYYSSYKVTINLNNLEHAMKSEIWPEGSYVTRYFHPRRSK
FT                 TSSQ*"
FT   CDS           904..3741
FT                 /product="Daphne-1_TCa_2p"
FT                 /note="ORF2."
FT                 /translation="RIICNAVFSSTSVEDQQSITPDSLQQCKGSLKILHLN
FT                 IQCLSNKLNEILLFLENHRDYDVLGFSEHWLSEYEIQSINLLNFKLATCFC
FT                 RRILRHGGTVLFVRDGIKFKHLDLSCFSIECDAEFSGIYLNEVKTVVICLY
FT                 RSGLGNVDIFLEQLGLLLDHIQNKTTDIVLMGDFNIDFKMHKSNNKLKELL
FT                 TLIMSHGLKVTIDTMTRISSSSESCIDNILTNINDGLYESEVFNPCLSDHY
FT                 AQHITLFNKNTLKPRSTTVTIRNKSNRNMRLFIEALETVNLNFQLKDVEES
FT                 TNFIINTYSYLIEKFFPYKEIECKDSYVPLKWFSDELRNLRNNVSILKTVS
FT                 LVSKDPIDIKAYKSLHSQYKKNIATTKKNAYNQFLKNSVNKSRDVWKLINF
FT                 ERNCNPHRINNEISSDEFNNFFCSIAEKIVNSIQPNSFPNTSQSFNRTINT
FT                 QSFFLEPVSQKEVSNVINKLNNSKCCDIYDLDSSILKSSEFIVTPFLTELI
FT                 NKCFVSGVFPNKLKCSKIIPIFKKGNKMNVENYRPIAIIPILGKIIEILVK
FT                 ERLIRFFEKYNLLSNSQFGFRKGRCTITALRDMVEHVVECLDGGHAIGAVL
FT                 CDLSRAFDCVSHSILLQKLEHYGIRGTPLKFFESYLQNRKQMVLSNNKYSN
FT                 IGKIEHGVPQGSVLGPLLFIIYINDLSAHLSPIKNILYADDATLLFASKNR
FT                 NEINLQFEDGLRKAEQWFNNNCLKLNKDKTQKIIFSFNNNHIRGVQVKLLG
FT                 LIVDDGLKWNYHIDYLCRKISSQLFVLRQLKKVLNFNNLVTTYFSLIHSVL
FT                 SYGILLWGNSCHSIRVFKLQKKAVRILAGITQRESCRPWFHKFQIMSLPSM
FT                 FIYSTLIETHHSNNFQTHGELHGYNTRGAHLLVTTKHNHVTTDKNCLNLNI
FT                 FNKLKRETKLLQHKQFKQTVKNYLKDNVFYSITEFLTSNITI"
XX
SQ   Sequence 3970 BP; 1437 A; 656 C; 648 G; 1229 T; 0 other;
     gctgtgatgg ctggcgacgc tacacaacaa gccaatgtgc tctgtaagaa atgtggctca        60
     aaagtggtga attttgtaaa gtgcaagctt tgtcaacacc agtttcatcc gagttgtgct       120
     aagattttga atgcaacttt ccacgacaac aaatctatca cgtgttgtga aaaacacgag       180
     atatttgaag atgcatacga tgggaaaaca tctgacgacg agataaattg ggaaaatgta       240
     agtccgcaac ttttctcgta tattattaaa gaaaaggacg ccttaatcga agaattaaga       300
     ggtaaaattg cattattgca aatttgcatt caagaaaaaa aataaatcgt tgtctccaaa       360
     gaaacattct cctccgatga tcgccgggca gtcgccgcca gcgcatacag tcgttgataa       420
     caaatcggca ggtagaaaca aaaacgaaat caaaaataaa gataaactaa acaaagtcgt       480
     attcgaaaag gaccagctac aagcccaaag taatacgact gctacaaaaa tagttgagaa       540
     caataagaaa agcatgcctc gacatgaaac tccgaaaaat gaagactctg tcattgaaga       600
     aagaaaaaat gattggaaaa ctataactca caagaaatta gacagaaagc aacaaaggaa       660
     tgctgttata gggacacacg cttgtgacaa aataaaaaca gcacccaaaa aggcttttct       720
     ctatgtttca agactctatc cagaaaccaa aagtgaagac ttggtgagct tacttcagaa       780
     tacttttcca gaagtaacat gtatgaagtt ggactccaaa tatccagagt actactcatc       840
     ctacaaggtg acaattaacc taaacaatct agaacacgca atgaaatcag aaatttggcc       900
     tgaaggatca tatgtaacgc ggtattttca tccacgtcgg tcgaagacca gcagtcaata       960
     acacccgact ctttgcagca atgcaaaggg tcgcttaaaa tattgcattt aaatattcag      1020
     tgcttgtcaa ataaattaaa tgaaattctt ttattcttgg aaaaccatag agattatgat      1080
     gttttaggtt ttagcgaaca ttggttaagt gaatatgaaa tacagtcaat caacttgctc      1140
     aatttcaaat tagcgacttg tttctgcagg cgcatattac gtcatggagg aactgttctt      1200
     ttcgtaaggg atggtataaa attcaaacat ttggatcttt cttgcttctc catagagtgt      1260
     gatgcagagt ttagtgggat ctatctaaat gaggtaaaaa ctgttgttat atgtttgtat      1320
     aggtctggtc tgggcaatgt agatatattt ctagagcaac ttggtctgtt gctagatcat      1380
     attcaaaata aaactacaga tattgttttg atgggtgatt ttaacataga cttcaaaatg      1440
     cataaatcga ataataaact aaaagagttg ctaactctaa taatgtctca tggtttaaaa      1500
     gttactatag ataccatgac aagaattagc tcttcatccg agagctgcat tgataatatt      1560
     ttaacaaata taaatgatgg gttatatgag tcagaggtat ttaatccttg cttatctgat      1620
     cactatgctc aacacattac attatttaac aaaaataccc taaaaccaag atctaccact      1680
     gtgacaatcc gtaataaaag taaccgcaat atgaggcttt ttattgaagc gctagaaacc      1740
     gtaaatttaa attttcaatt gaaagatgtt gaagaatcaa ctaactttat aattaacaca      1800
     tactcttatt tgattgagaa attctttccc tataaagaga tagaatgtaa agattcctat      1860
     gttccgctaa aatggttttc tgatgagttg cgtaacctca gaaataacgt ctcaatacta      1920
     aaaactgtaa gtctcgtgtc taaagatccc attgatatta aagcttataa aagtttgcat      1980
     tcacaatata aaaaaaatat tgcaacgacc aaaaaaaatg cttataatca gtttctaaaa      2040
     aattcggtta ataaatccag ggatgtatgg aagctaataa attttgaaag aaattgtaat      2100
     ccacacagaa ttaataacga gatttccagt gatgagttta ataacttttt ttgttctata      2160
     gcagaaaaaa ttgtaaactc aatacaacca aattcatttc caaatactag tcaatccttc      2220
     aatcgtacta taaatacaca atcatttttt ttagaaccgg tgtcacaaaa ggaagtcagc      2280
     aatgttatta ataaactaaa taattcgaaa tgctgtgata tatatgacct agattcctca      2340
     atacttaaat cttccgagtt tatagtaacc cccttcttaa cggagcttat aaacaaatgt      2400
     tttgtttcag gagtttttcc caataaacta aaatgtagca aaatcatccc aatttttaaa      2460
     aaaggtaata aaatgaacgt tgaaaactat aggcccattg caatcattcc cattttaggc      2520
     aaaattattg aaatcttagt gaaagaaaga ttaattcgat tttttgaaaa atataatcta      2580
     ctaagtaaca gtcaattcgg tttcagaaaa ggccgttgca caatcactgc tcttcgagat      2640
     atggtggaac acgtagttga atgtttggat gggggacatg caataggtgc agttttgtgc      2700
     gaccttagta gggcttttga ctgcgtgtct cactctattc ttttacaaaa gctagagcat      2760
     tacggtataa ggggtacgcc attaaaattc tttgaatctt atcttcagaa tcgaaaacaa      2820
     atggtactct caaacaacaa atactccaat atagggaaaa ttgaacatgg cgtaccccaa      2880
     ggatccgtac ttggaccgct attgtttatc atttatataa atgatttgtc tgctcactta      2940
     tcacctatta aaaatatttt gtatgctgat gacgcaacgc tactctttgc ttcaaaaaat      3000
     cgtaatgaaa tcaatcttca atttgaagat ggattgcgta aagcagaaca gtggttcaac      3060
     aataattgtc tgaaattgaa caaagataaa actcaaaaaa ttatcttttc gtttaacaac      3120
     aatcatataa ggggtgtcca agtgaaactt ttaggtttaa tagttgatga tggtttaaaa      3180
     tggaattatc atattgacta tttgtgcaga aagatctcga gccaactgtt tgtacttcga      3240
     caacttaaaa aggtactcaa ctttaacaat ctagttacca cctatttttc actaatacac      3300
     agtgttctca gttacggaat ccttctttgg ggaaattcat gtcactcaat aagagtattt      3360
     aaacttcaga aaaaagcagt gagaatttta gctgggataa cacaacgcga aagctgtaga      3420
     ccttggtttc acaaatttca aataatgtcg ttaccctcaa tgtttattta ttctacttta      3480
     attgaaaccc atcattcaaa taattttcaa actcatggtg aactgcatgg ttacaataca      3540
     agaggagctc atctcttggt tacgacgaaa cacaaccatg taacaacaga taaaaattgt      3600
     ttaaatctaa atatatttaa taaactcaaa cgcgagacca aactcttgca acacaaacaa      3660
     tttaagcaaa cagtcaaaaa ctatcttaaa gataatgtat tttattccat cactgaattt      3720
     cttacgtcaa atattactat ataactaagt attcattgaa accagtagat atatttgtta      3780
     aaatttaaat tgtaggtcac tgtttttaac atttaaatat tgtctgtatt gtcttattat      3840
     ttacaacttt gtatgttgag ctgttgactt gtatacgtat gttttttgtt atactgacgt      3900
     gtctgtaagt tcttttgtaa ctgttttgac gaataaatta ttattattat tattattatt      3960
     attattatta                                                             3970
//
ID   Daphne-20_LMi repbase;    DNA;    INV; 4594 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4594
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3391-3391 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(431..466,423..692,665..1189,1159..1641,
FT                 1640..1879,1849..2175,2067..2330,2285..4120,
FT                 4048..4380)
FT                 /product="Daphne-20_LMi_1p"
FT                 /translation="MPKKIPYNVKKQNVSCRRKYRTMSKNSNEIPNRGNRN
FT                 SMNSSELHIENKSRLFKKPKIFVLADSHGKGVMDILRNMIPDAKITGIIKS
FT                 GRLSEVLRSCENQKSFKILRKSEMMGNNCIVIGGSNDVYHNESHLATRALK
FT                 EKLLQFPLVNFYVVSLPQRHDLITDSCVNIELTATNRKFEKICRSSKNATY
FT                 VNINSASREYFTRHGLHRNVKGKREMCLEILRKMKDGYAIKNTTIPLPGKI
FT                 ASEQNRSVSYSGKTSAEAAKLISTVDIAMSSHQHQWHSYVIPSTPVVDTET
FT                 TPPEAKAEADSSDISTGTSIEVAQIKTAAASDQIKKRQATLQKSSKTTTVR
FT                 STQRMQLRPRRVAIQDKDFFMVSSQNKERADPHVSNPVSCHADVNSKQTLK
FT                 IVHQNVQSLTNKVDEINVLVNNEWKDVSVLCFCEHWYQTSIFIVFKNNRFY
FT                 PCKQLLQIKSNHGGTCIYVKQNVKCKNLVSVCKLGCDIDFEISAVDLLAEK
FT                 TIILCVYRPPASNISVFFFPKNQYKCFFFSKKLDLALGQLKTIGKTLVLCG
FT                 DFNTDFLSQSPQRDKFLNIMKAYNLYMTVNSPTHITKTSATLIDQVCVNME
FT                 NCTQKTSILAIATIYHRYYVYLLNTFQPVPGMCKHGELHSENFNTGYSNHL
FT                 SQVLCIPIKHISASVKNITYKRSYSQKNIEHFHYLISKLSWTNVYETPTTD
FT                 QKMEMFLMLSGIILISKDGNVFDAFRHNFNIAFPKKKVISRTDRFNNWITP
FT                 AIRVSCRRKRELFMLSKTNNNPDFQNYFKKYKSVLRQVIKEAKIKANDKYI
FT                 MESSNKTKTMWKAVQDLTGNKTTQKNIEILQDGETVTHPKAVANYFNSYFA
FT                 TIADTLVKEKFRNPPNTTLDELSHTGVNNVSMFLNPVGPSELLNTINTLKS
FT                 NYSAGLDDVPDYIIKISANLLLPPLLDICNSSLSSGVFPKQLKRAKVVPLY
FT                 KKGDQTCMSNYRPVSLLSGFSKIIEKLFLSQLTSFFTKNNIISECQHGFRP
FT                 QCSTETATFNLISRVLNAVDNHKKISGLFLDLTKAFDVIDHSLLLRKLERY
FT                 GVRGVPNEWIKSYLENRSQITEIKHIDGYELQTHLSEPCIVSHGVPQGSIL
FT                 GPFLFLVFINDFPLHVRGPEPVLFADDTSLLIEANDDEENLTASAKDIAND
FT                 VYEWFSRNKLIVNPQKTVLINFHTDQNKNVVQPKVCMDNQNISAASETKFL
FT                 GIHIQENLKWSTHIAALNSKLSKMRYVLKIICNNTSADTVRSVYFAHVHSL
FT                 LRYGIIFWGSAHQAITVFRRQKAIIRIIKQASSRKSCKPFFKDLKILPLPC
FT                 VYIMEVVMFVKKKVYGPENPTPSLCVHYGSSHVCKKKSLLRRKNHFHQNNI
FT                 LHDYSTRSNNDIHINHCNTTLCQKGVYHAGTKLYNRLPRHIKSSPDLLNFK
FT                 KSVTAYLLENCFYSVSEYLMHEEM"
XX
SQ   Sequence 4594 BP; 1689 A; 827 C; 807 G; 1271 T; 0 other;
     agatggcgtc ggtcgggttg tacagtgaaa ttacactcca aaatcagttc aatttaaatg        60
     gttcttcatg tagaaagtgt tcaaaacgcg tagtcaaagg aattcagtgc gtaaaatgca       120
     atttctggtt acatgaaaag tgtgcaaaag tttgtttgaa ctatataaat gatgatatcc       180
     tgtggacatg tctcgactgt gtaagtgaca aaatgtggaa ttaacttccg aattaacttg       240
     caaagacgaa attattcgtg ttctacaaag tgatgttaat gctctgaaag ctgaagtgtc       300
     attgctaaag caggcaaata ttgaattgga gcgtgaaata tgttgtgttt gtaaaaactc       360
     tcgtgcacca gttgaagata aatcggcaaa tacgcggagt gatacaaaca gtgtaaatgt       420
     gaaatgtttc atgccgaaga aaataccgta caatgtcaaa aaacagtaat gaaattccaa       480
     atcgtggtaa cagaaattcg atgaacagca gcgaattaca tattgagaac aaaagcaggt       540
     tattcaagaa acccaaaatc tttgttttgg cagacagtca cggaaaaggt gtcatggaca       600
     tattacgaaa tatgatacca gacgcaaaaa taaccggtat cataaaatca gggcgcctct       660
     ctgaagtttt aagatcctgc gaaaatcaga aatgatggga aataattgta tcgtaatcgg       720
     cggctcaaat gatgtttacc ataatgaaag ccaccttgca acgagggcat tgaaggaaaa       780
     attacttcag ttccctcttg taaactttta tgtggtcagc cttccacaga gacatgactt       840
     aatcacagat tcatgtgtta acatcgagct aacagccaca aacagaaaat tcgagaagat       900
     atgtagaagt agtaaaaatg ctacatatgt gaacataaac agtgctagca gggaatattt       960
     cacaagacat ggtctccata gaaatgttaa aggaaaaagg gaaatgtgtt tggaaatcct      1020
     gaggaagatg aaagatggat atgccataaa gaacaccaca atcccactcc caggaaaaat      1080
     tgcatcagaa caaaataggt cagtgtcata ttcgggaaaa acatcggctg aagcagctaa      1140
     attaatatcc acagttgaca tagctatgtc atcccatcaa caccagtggt agatactgaa      1200
     acaacgcctc cagaagcgaa agcagaagca gattcaagtg acatctctac cggtacatct      1260
     atagaagtag cacaaataaa aacagcagca gcttcagatc aaataaagaa acgacaggca      1320
     acactccaaa aatcgtcaaa aacaacaaca gtaagaagta cacagaggat gcaactaaga      1380
     ccgagaagag ttgcaattca ggacaaggat ttttttatgg tgtcgtcgca gaacaaggag      1440
     agagctgatc cacatgtgag taacccagtt tcatgccatg cagatgtaaa ctctaaacaa      1500
     actctgaaga ttgtacacca aaatgtacaa tcactaacaa acaaagtaga tgaaataaat      1560
     gtacttgtaa ataatgaatg gaaggatgtt tcagtgttat gtttttgtga acattggtac      1620
     caaacgagta ttttcatagt ttaaaaataa tagattttac ccttgcaagc agcttttgca      1680
     gataaagtca aaccatggcg gaacttgtat atatgtcaaa caaaatgtga agtgtaaaaa      1740
     tttagtctct gtatgcaagt taggttgtga tatagatttt gaaatatcag ctgttgactt      1800
     actggctgaa aaaactatta ttttatgcgt gtacagacct cctgctagca atataagtgt      1860
     tttttttttt ccaaaaaatt agaccttgct ctaggacaac tgaagacaat tgggaaaaca      1920
     ttggtactct gtggggattt taacactgat tttctaagcc aaagccctca gagagataag      1980
     ttcctaaata taatgaaggc ctacaatctg tatatgactg ttaattctcc aacccatata      2040
     acaaaaacta gtgccacttt gattgaccag gtatgtgtaa acatggagaa ttgcactcag      2100
     aaaacttcaa tactggctat agcaaccatt tatcacaggt attatgtata cctattaaac      2160
     acatttcagc cagtgtaaaa aatattacct ataaaaggag ctatagtcag aaaaatattg      2220
     aacacttcca ctacctaatt agtaaactat cctggacaaa tgtttatgaa acccctacca      2280
     ctgatcaaaa gatggaaatg tttttgatgc tttcaggcat aattttaata tagccttccc      2340
     aaaaaagaaa gttatttcca gaacagatag gttcaataat tggattacac cagccattcg      2400
     ggtctcttgt agaaggaaga gggaactctt catgctctca aaaacaaaca acaatcctga      2460
     tttccagaat tatttcaaaa aatacaagtc agttttaaga caagtaataa aagaagcaaa      2520
     aattaaggca aatgacaaat atattatgga gtcatcaaac aaaaccaaaa ccatgtggaa      2580
     agctgtgcag gatcttacgg gtaataaaac aacccagaaa aatattgaaa tattgcagga      2640
     tggagaaact gtcacacacc ccaaggcagt tgcaaactat tttaattctt actttgcaac      2700
     tattgctgat acactagtaa aagaaaaatt tagaaaccca cccaatacaa cattagacga      2760
     actttcacat actggagtaa ataatgtatc catgtttttg aatccagtag gcccatctga      2820
     acttctaaat actattaata cactgaagag taattattca gctggtttag atgatgtccc      2880
     agactacatt attaaaatat cagcaaatct tctactcccc cccttgttag atatctgcaa      2940
     ttcttcttta tcaagtggtg ttttccctaa acagctaaaa cgagcaaaag ttgtaccact      3000
     gtataaaaaa ggagatcaga cctgtatgag taactatagg ccagtgtcac tactgtcagg      3060
     attttcaaaa attatcgaaa aactgttcct ttcacaacta acttcattct tcaccaaaaa      3120
     taatattatt tctgaatgcc aacatggctt cagacctcag tgctcaacag aaacagccac      3180
     tttcaatctg ataagtcgtg tattaaatgc agtggacaat cacaaaaaaa tctcaggttt      3240
     attcttagac cttacaaaag ctttcgatgt catcgatcat tctttactct tgagaaagct      3300
     tgagcgttat ggtgtgagag gtgttccaaa tgagtggatt aaatcatatt tggaaaatcg      3360
     ctcacagata accgaaataa agcatattga tggatatgaa ctccagacac acctttcaga      3420
     accatgcatt gtgagtcatg gcgttccaca gggctcaatt ttaggtccat ttcttttctt      3480
     ggtgttcatt aacgatttcc cactacacgt taggggtcca gagccagtac tgtttgcaga      3540
     tgacactagt ctactgattg aagcgaatga tgacgaagaa aatcttactg catctgcaaa      3600
     ggacatcgca aatgatgtgt atgaatggtt tagcagaaat aaactaatag taaatcctca      3660
     gaaaacagta ctcataaatt tccatacaga tcagaataaa aatgttgtac aaccaaaagt      3720
     atgtatggat aaccaaaata ttagtgctgc ttctgaaaca aaatttcttg ggattcacat      3780
     tcaagaaaat ctcaaatgga gcactcatat tgcagcccta aattcaaaat tatctaaaat      3840
     gaggtatgta ctcaaaatta tctgcaacaa cacttctgct gatacagtta ggtctgtata      3900
     ttttgcgcat gtacattcac tactgaggta tggtattatt ttctggggaa gtgctcacca      3960
     ggccataacc gttttcagga ggcaaaaagc aatcataaga ataattaaac aagctagcag      4020
     cagaaaatcc tgcaaacctt tctttaagga cctgaaaatc ctaccccttc cctgtgtgta      4080
     cattatggaa gtagtcatgt ttgtaaaaaa aaaagtctac tgaggagaaa aaatcatttt      4140
     catcaaaata atattctcca tgattacagt acaaggtcaa acaatgacat acacattaat      4200
     cactgcaaca ccacattgtg ccagaaaggt gtatatcatg caggcacaaa attgtacaac      4260
     agattaccca gacacatcaa atcttctcct gacctactaa acttcaaaaa gtctgtgaca      4320
     gcctacctac tagaaaactg cttttactct gtctcagagt atcttatgca tgaggaaatg      4380
     taattaattt tgtaactgtt gaaataagtt tgtaaagatt cagtgtatac ccaatctcat      4440
     ctcattatta attatgtaaa tctagttact attgaaattt aactaacatg tgtatcttct      4500
     gcaaattgta aatccaaaag ataaaatttt atgtccaata tcttgtgtac aacatatgta      4560
     ctgaaataga ttataaggac aaataaataa ataa                                  4594
//
ID   Daphne-21_LMi repbase;    DNA;    INV; 4836 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4836
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3392-3392 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(225..665,841..1170,1187..1507,1453..3393,
FT                 3383..3652,3592..4044,4016..4384)
FT                 /product="Daphne-21_LMi_1p"
FT                 /translation="MCARNNARKFVPATRNRSTTQVHYSCMSAVSKQKTWF
FT                 CSKCMSNKLATTLNSKNSTGAIISVLIDEISVLNKKLINSKKAGEQYRPIS
FT                 ECVVKQASRRQKWNHAAHESGCVKCCKKCLKTAKTVYYVPSARYLLIDAED
FT                 GSLGKKNNDDYKDKTEKQNDVPAAAEDTERRFQYYQKPQQCKKLLILADSH
FT                 GRGLSAHINEEPSMNAVGYIKPGASSTEVCELANLTEVSKLTSVDFVVLSA
FT                 GSNDVYKNKTSMLVENSPNTHKCNICNIPHRHDLPHWSCVNQEISKANECY
FT                 KKICKRFQNVSVINTNGVGRRFHTTHGLHMNGLGKILIASLVLKEVTKKHK
FT                 QISLNFQHSPSADTCTPPFLESQLSTQPFCRYLHTSFFRVNHSRTTSSSEK
FT                 TQKLICKDIQTNTRTCKYSDVTLCTKKKQFSFTLMCNHSGENLINYNTGWN
FT                 KTIVVYCINEHWLNNTQIELCVPFGYSLISSYCRTSMVHGGVSIYIRDNPH
FT                 IKYSVIDVSSLCLEGIFEAAAVVLHTYKFVIVSLYRTPGTDEKIFIEQLNT
FT                 LILLISKYKHHRLYITGDINIDIREKRKNVSHLINTIKSLNFYCLNEQPTR
FT                 LDACLDNIITNDHKDYVECSVAKLGISDHDGLWLKIKESPSEGITNIVKYR
FT                 KLNKHNIENMTKDLKSIDWSSTLTAEKTIDECTSLFLDTLQHILNSNCPTI
FT                 YKKNTNDTKCRPQNTKVWYTPKLNKIRILLLIAKDRSIKSEEIKKVYTKLK
FT                 EIYKMEIKIAKCEANDTYILKSKNKLKAAWNVIKSEINQRKRDNTIPIDSN
FT                 VLNEYFVNCTDSHHSTYNNSLGAENLLPQVENIPTFSWSEISLYDISKAIN
FT                 KLNNSKTEDYYGISNVVLKSIANEIKLPLLYLVNRILTEGVFPQALKITVT
FT                 LPVFKKGDRNLTSNYRPIAIVPVVSKIIESCIHTQIYYYFENNGLLNANQF
FT                 GFRPHLSTIKAIGNLLDNIHDGVENRQTACATLIDLSKAFDSVSHETILMK
FT                 LTTTALLRHKGKIIKFIKTYLSDRLQQVYANNQTSQLLKTKCGIPQGSVLG
FT                 PFLFIVYINDFSTHIPCKNILYADDITLITTAKTYTMYKTSIRKRHHTDNN
FT                 GENLHNVQNLNKEIIEMTNHWCRANQLSINEAKTEELYFNLRATKSENKNV
FT                 KLLGLVIDKRLSWDGHTSYLSSKLARVLFLLHKLRQNISKTLLLCSYYAFF
FT                 HSHLQYGILLWGNAPGSAYIFQWQKKAIRCILGLPPQRDLQKVYPPRETCR
FT                 NKFRLLNIMTVPSLYIYYCLIHAKENLNKLKLRNNVHSHHTRYNHRIDLPY
FT                 SRLSLTHNSHKHMSLTFFNKLPKTAHTTPMHKFKRVLETWLKECEFYTVEE
FT                 FMERDVKDLCFE"
XX
SQ   Sequence 4836 BP; 1862 A; 867 C; 829 G; 1277 T; 1 other;
     gtttgggcaa gatggcacca agtgaaaata ccggggaaat atttagttgt acaaacaaga        60
     ctcaacaaag tgtggaaaaa tgttaattgc gggatttttg atatacacag cgaaaccaag       120
     tgcatctcgt gctatattgt atcgaaagtg ttgaatttga tgtgacaaag agaataattg       180
     tgtsaataat ttgaggtgcg ttacaagcac ttcaatgcct gaacatgtgc gcgagaaaca       240
     acgctcggaa atttgttcct gcaacaagga ataggtctac aacgcaagtc cattacagct       300
     gcatgagtgc tgtttcaaaa caaaagacat ggttttgctc gaaatgtatg agcaacaaat       360
     tagccacgac tctgaacagt aagaactcga caggtgccat tatctcagta ttaatagacg       420
     agatatcagt gttaaacaaa aaattaatca acagcaagaa agcgggcgaa cagtataggc       480
     ctataagtga atgtgttgtg aaacaagcct caagaagaca gaaatggaat catgctgcac       540
     atgaaagtgg atgtgtgaaa tgctgtaaga aatgtttaaa aacagcaaag accgtgtatt       600
     atgtaccaag tgcaaggtat ctacttatcg atgccgaaga tggatccctc ggtaaaaaaa       660
     acaattaatt acattaggaa atggactgtg cattgtaggc ctcatagatt ccggtaattg       720
     gtctgtgcct cgacggactg tgaaagcagt ctgtaaataa ttgctgtctg tgagacatcc       780
     cattaaaaaa cagttttgat gccctcggga tgtagtgccg cattatgatg acagtggtga       840
     gatgactaca aggacaaaac tgaaaaacaa aacgatgtcc cagcagctgc agaagacacg       900
     gaaagaagat tccaatatta ccagaagcct cagcaatgta aaaaactttt aatactcgcc       960
     gatagccatg gacgaggact gtctgctcat ataaatgaag aaccttctat gaatgcagtg      1020
     ggatacatca aaccaggtgc atcgtctaca gaagtttgtg aacttgctaa tctaacagaa      1080
     gtcagtaagt taacctcagt tgattttgta gtgttgtctg ctggctctaa tgatgtttac      1140
     aaaaacaaaa cctctatgct tgtagagaat taaagaaatg ccttagtctc ctaacacaca      1200
     caaatgtaat atatgtaata ttccacacag acatgatttg ccacattggt cctgtgtcaa      1260
     ccaagaaatt tccaaagcaa atgagtgtta taagaaaata tgcaaacgat tccaaaatgt      1320
     gtctgtaata aatacaaatg gtgtgggtcg cagattccac acaacacatg ggttgcatat      1380
     gaatgggtta gggaaaatat tgatagctag tttagtgcta aaggaagtta ccaaaaagca      1440
     caaacaaatt agtctcaact ttcaacacag cccttctgca gatacctgca cacctccttt      1500
     tttagagtaa accatagcag gacaaccagt agttcagaga aaacacaaaa gttaatttgt      1560
     aaagacatac agacaaatac cagaacatgt aaatatagtg atgtaactct ctgcaccaaa      1620
     aagaaacagt tctccttcac attaatgtgc aatcactcag gggaaaactt aatcaattac      1680
     aatactggtt ggaacaaaac aattgtagta tactgtataa atgaacactg gctaaacaac      1740
     acacaaatag agctgtgtgt cccatttgga tactcactga tctcaagtta ttgtagaaca      1800
     agtatggtac atggaggtgt atcaatctac ataagagata atcctcatat caagtactct      1860
     gtaatagatg ttagtagttt gtgtctagaa ggtatatttg aagcagcagc agtggtatta      1920
     cacacatata aattcgtaat agtctcactg tatcgtactc caggaactga tgaaaaaatt      1980
     ttcatagaac aactcaacac gctaatacta ctaatttcaa aatacaaaca tcacagactc      2040
     tacataacgg gtgacattaa catagatata agggaaaaaa ggaaaaatgt ttctcactta      2100
     ataaatacaa taaagtcact caatttctat tgcctcaatg aacaaccgac aaggctagac      2160
     gcttgcttgg acaacataat tactaatgat cataaagact atgtagaatg tagtgtagcc      2220
     aaattaggaa tatctgatca tgatgggctg tggctaaaaa taaaagagtc accctcagaa      2280
     ggtatcacaa atattgtaaa atacagaaaa ctaaacaaac acaacattga aaacatgaca      2340
     aaggatttaa aatcaataga ctggtccagt acattgacag ctgagaaaac tattgatgaa      2400
     tgcacttctc tatttctaga cacactacaa catatactaa atagcaactg tccaaccata      2460
     tataagaaaa acaccaatga cactaaatgt agaccacaaa atactaaagt atggtataca      2520
     ccaaaactga ataaaataag aatactgctt cttatagcta aagacagatc tattaaaagt      2580
     gaggaaatta agaaagtata cacaaagctt aaagaaatct acaaaatgga aatcaaaata      2640
     gccaaatgtg aagcaaatga tacctacatt ttgaaatcaa aaaataaatt gaaagcagca      2700
     tggaatgtca tcaaaagcga aataaatcag cgcaaaagag acaatactat tcccatagat      2760
     tcaaatgtac taaatgaata ctttgtaaac tgtacagact ctcaccattc aacctacaac      2820
     aacagcttag gtgccgagaa tctgctaccc caagtagaaa atatacctac attttcatgg      2880
     tctgaaatca gtctctacga tatcagcaaa gcgatcaata aacttaacaa ctctaaaaca      2940
     gaggactatt atggaatcag taacgttgta ttaaagagca tagcaaatga aattaaattg      3000
     cctttgcttt atttagtcaa tagaattttg acagaaggtg tttttcccca agcactaaaa      3060
     atcaccgtca cactaccagt gtttaagaaa ggggatagaa accttactag taactatagg      3120
     ccaattgcaa ttgtaccagt tgtttcaaaa ataattgaaa gctgcataca cacacaaata      3180
     tattactatt ttgaaaataa tgggttactg aatgcaaacc aatttggctt ccgaccacac      3240
     ctgtcaacaa taaaagcaat aggaaatcta ttagataata tacacgatgg tgttgaaaat      3300
     agacaaactg catgtgccac acttatagac ttgagcaaag cctttgattc agtgtcacat      3360
     gagactatat taatgaaatt aactactacg gcataagggg aaaatcatta agtttattaa      3420
     aacctatcta tctgacaggc tacagcaagt atatgctaac aatcaaacat cgcaattgct      3480
     gaaaacaaaa tgtggaatac cgcagggatc ggtacttgga ccctttctct tcattgttta      3540
     tataaatgac ttttcaactc acataccatg taagaatata ctgtacgctg acgacatcac      3600
     actgataaca acggcgaaaa cttacacaat gtacaaaacc tcaataagga aataattgag      3660
     atgactaatc actggtgtcg agctaaccag ctatccatca atgaagcaaa aacagaagaa      3720
     ctttatttca atctcagagc aacgaagtct gaaaataaga acgtaaaatt actcggactt      3780
     gtgatcgaca aaagattgtc atgggatgga cacacatcct atttaagcag caaactagca      3840
     agggtattgt ttctattgca taaattaagg caaaatatca gcaagaccct cctactctgc      3900
     tcttattacg cattcttcca ctctcacctg caatatggaa tactgttatg gggaaatgca      3960
     ccaggatcgg catacatttt ccagtggcag aagaaagcca ttaggtgtat cctaggttta      4020
     cccccccaga gagacttgca gaaataaatt cagactatta aatataatga cagtccccag      4080
     cctctacata tactattgtc taatccatgc taaagaaaat ttaaacaaac ttaaactaag      4140
     aaataatgta cactcacacc acacgagata taaccacagg attgatttac catactccag      4200
     actttctctc acacacaata gccataaaca catgagcctc acattcttta acaaattacc      4260
     aaagactgct cataccaccc ctatgcacaa gtttaaaagg gtattagaaa cttggttaaa      4320
     agagtgtgaa ttttacacag ttgaagagtt catggagaga gatgttaaag acctgtgctt      4380
     tgagtagcaa cacctagctc agtaaaatta tttgtaataa atttatgtat atgtaacaca      4440
     aatgtaaaaa tagaataacg ttaagttata ttgcttgaac aataataaac aatgatcagc      4500
     tgtattattt aataactaaa tatttgtaat tataattcca ttgttttaag cacttatatg      4560
     taaccaagag atcaaagaat caggacatat gtaaatatct gtgatcaata tgacagtgtt      4620
     ataagcatgt aatatgtaaa tatttgtgat taatatgaaa ttgcttctag ggaataatat      4680
     atttataaac taggtatgaa taagtagaca agaaactcaa actgttctat tagtacaatt      4740
     tattgttaca tgtaaaaaga aacaattaac tgtaattaac acattgacaa tgccaattgt      4800
     atcaaaaaat actgaacggc tgataacaat aaacaa                                4836
//
ID   Daphne-22_LMi repbase;    DNA;    INV; 4134 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4134
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3393-3393 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1443..3755
FT                 /product="Daphne-22_LMi_2p"
FT                 /translation="QICHFSERLVTTNGLTLNFSEYTRVTATSATCIDNIV
FT                 SSINYSAKEKFVLEFGISDHSALFLTLPILVKAGRPTVKRVRNVSQENVNE
FT                 TTWSFSNQSSVNTNYNTFVSEFLDIFNECFPFITAHDKYNKNNSWITEGIK
FT                 ISCIRKRELHMEAKTNRDAEFVIYVKKYKRILDRVIKQAKLMANSQYIANA
FT                 TNKSKAVWQIVKTEIGAEKINNFNFKLEIDGETVANSRQICEEFNRYFTAS
FT                 NKTDNFSPPHIRPNTGRPGEFKFSHVSCHEVASIIKSLKNLKSVGWDEIPK
FT                 IKRQDVTVLHPNSVLINQSFDEGCFPERLKYAEVRPIHKKGRQDELGNFRP
FT                 VSLLPIFSKIFERVVCNQLEKYNKEHNIILHNQYGFRKGLSTVHAINDLIT
FT                 KISKSLDNKQCVSGIFCDLTKAFDMVNHKLLLHKLAANGVQGKSLGWFSSY
FT                 LKNRKQRVVIQQKTEKVYSSWEEIQTGVPQGSLLGPLLFLYYINDMPSEIT
FT                 SETILYADDSTAVICCKNTEELVQKTKQTLHELENWINNNAMKLNLTKMQI
FT                 VHFRTKQTSEYISQLNYEGKELIPADAVKFLGVTINKNLSWSDHVDCLVKR
FT                 LNSFVYAMRVLNKITDLAVKKMVYHAYFLSVVRYGIIFWGAEKTNLXRVFK
FT                 LQKKIIRAMTGADNRQSCKPLFISLDLMTIPSLFIYEIVLFEIKKPQLFEG
FT                 NSFTHTYTTRHKSHYMLPCHRLRLYENTPYYMALKIRNKIWTKFKDSKTDI
FT                 TVGNIEKYLKANVITVWMIL"
FT   CDS           join(531..884,848..1057,1039..1218,1127..1405)
FT                 /product="Daphne-22_LMi_1p"
FT                 /translation="MIPVPSLRSYSLPQFLQFTNVLVTTLPLRYDLPAWSC
FT                 VNEEIRATNRKMKSFCAKFVNVKLIDISNYERNFFTHHGMHLNRYGKRILA
FT                 SNISNALREIPFNVSNDKSVLVLGSPSQGNVCSCAWLSFTGKLIQWTNFRG
FT                 IWSERNGKCDTDSNPYAGVKYVNQFNDSVLDLFCKNNFIMHLNIGPTEEHR
FT                 AYRGMMNKLYELEVFLEKTKSVKVICLNEHWLDKFTLRLQFATSYCRWMHS
FT                 SRAVTQIMNTGLINSLSGYSLQLVIVDGCILVEQSLRFEIRQTFNYLNDEQ
FT                 VFESCCIKLLEYGILIISIYHSLKLGTVYFWTNLKPCVQVAVRKLIKRS"
XX
SQ   Sequence 4134 BP; 1498 A; 724 C; 753 G; 1158 T; 1 other;
     gacttaacag gaaaaggaca agaatcagaa cgctgcaaac gatatcatgc tctaaataaa        60
     aatacgctgc cctgaagaat aagtacgcat tttggaaaag aaaatgcggt ttctccagca       120
     gaaaatcaca ataaggaatc caatgtagcc taaacaacgg catgaatggc tttaccggcg       180
     taaataaaac gggcaccaat caatttacaa agtcttcctc atcaaatgaa atcaatggta       240
     aacaacaaga aactgaaaaa actacctcac ctcggaaaat tgtggtcttc aaggaaaaat       300
     caatgtccca gcagtgaaaa acaaccacag aagaagaagg tataaatatt tggcaacagt       360
     catgcacact gcacacggaa ctgtactaaa ctgtgaccgt gttagtgttt ctggcatcgt       420
     aaaacctggt gtacacttcg actgtgcagc agtgaatgta aggaagaatg ctcggatctc       480
     acaaggaatg actgtgtgcg ctcatagaag gtgcaataac ttctacagaa atgattccag       540
     tgccttcatt aagaagctac tcacttccac aattcctgca attcaccaat gtccttgtta       600
     caactttgcc tctcaggtat gacctgccag catggtcgtg tgttaacgag gaaattagag       660
     ctacaaatcg gaagatgaaa agtttctgtg ccaaatttgt taatgtgaag ttgatagata       720
     ttagtaatta tgaaagaaac tttttcactc accacggaat gcatctcaac aggtatggca       780
     aacggatttt agcttctaac attagtaatg ctctcagaga aatacctttt aatgtaagta       840
     atgataagtc tgttcttgtg cttggctctc cttcacaggg aaactaatac agtggaccaa       900
     tttccgtgga atttggtccg aaagaaatgg aaaatgtgac actgactcaa atccctatgc       960
     aggtgttaaa tatgtaaacc agtttaatga ttcagtgctc gatttgtttt gtaaaaataa      1020
     tttcataatg caccttaaca tagggcctac agaggaatga tgaacaagct gtatgaacta      1080
     gaagtatttc tggaaaaaac aaagtctgta aaagttatat gcttaaatga acactggctt      1140
     gataaattca ctctcaggct acagtttgca actagttatt gtagatggat gcattctagt      1200
     agagcagtca ctcagatttg aaatcagaca aacttttaat tacttgaatg atgaacaagt      1260
     atttgaaagc tgctgcatta aactgttaga atatggcata ttaattatta gcatatatca      1320
     ctccctgaaa ttgggcactg tgtatttctg gacaaatttg aaaccttgtg tacaagttgc      1380
     agttagaaag ttgataaaaa ggtcataatt tgtgcagatt caaatagatg tcagagctgt      1440
     gacagatttg ccacttctct gaaagacttg ttactacaaa tggcctaaca ttaaacttca      1500
     gtgaatacac cagagtaaca gcaacttctg caacatgtat agataatatt gtgagcagta      1560
     tcaattacag tgcaaaagaa aagtttgttc tagaattcgg aatatcagac cattcagccc      1620
     tttttctcac attgccaatt ttagttaaag cagggaggcc tacagtgaaa cgagttagga      1680
     atgtcagcca agaaaatgtg aatgaaacca cctggtcatt cagcaaccag agttcagtaa      1740
     acacaaacta caatactttt gtttcagaat tcttggatat tttcaatgaa tgtttcccct      1800
     tcataactgc acatgacaaa tacaataaaa ataactcttg gataactgaa ggcatcaaaa      1860
     tctcttgtat tagaaagagg gaactgcaca tggaagcaaa gacaaaccgt gatgcagagt      1920
     ttgtcatata tgtgaaaaaa tacaaaagaa tacttgacag agtcattaaa caggcaaaac      1980
     taatggcaaa tagtcagtac attgcaaatg ccacaaataa atcaaaagct gtgtggcaga      2040
     ttgtgaaaac tgaaataggt gctgaaaaaa taaataattt caattttaaa ttagagattg      2100
     atggggaaac tgttgcaaac tccagacaga tctgtgaaga attcaacaga tactttacag      2160
     cttcaaataa aactgacaat ttctctcctc cacacataag acccaatacc ggtagaccag      2220
     gagaatttaa attttctcat gtatcctgcc acgaagtggc cagcattata aaatccctaa      2280
     aaaatctcaa atctgtaggc tgggatgaaa ttccaaaaat caaaaggcag gatgtgacag      2340
     tattgcaccc caactctgtc ttaataaatc aatcgtttga tgagggctgc tttccagaaa      2400
     ggctgaaata tgcagaagtt cggcctatcc acaaaaaggg cagacaagat gagttaggaa      2460
     acttccgacc agtatcatta ctgccaatat tttctaaaat atttgaacga gtagtgtgca      2520
     atcagttaga aaaatataat aaagaacaca acattattct tcataatcag tatggattca      2580
     ggaaggggct gagcactgtg catgctatta atgatcttat cactaaaata agcaaaagcc      2640
     ttgataataa gcagtgtgta tccggtatct tttgtgatct aactaaagca tttgatatgg      2700
     taaaccataa actgctgctc cacaagctgg ctgctaatgg cgtccagggg aaatctctag      2760
     gctggttctc gtcctacctc aaaaacagaa aacagagggt agtgatacaa caaaaaactg      2820
     agaaggtcta ttctagctgg gaggaaatac aaacaggagt accccagggg tccctgttag      2880
     gcccattact gtttctgtac tacataaatg atatgccaag tgaaataact tcagaaacaa      2940
     ttctctatgc agatgactct acagcagtaa tctgctgtaa aaatactgaa gaactagtgc      3000
     agaaaactaa acaaactctt catgaactag aaaactggat aaataataat gccatgaaac      3060
     tgaacttaac aaaaatgcaa attgtacatt tcaggacaaa acaaacaagt gaatacatat      3120
     cacagttaaa ttacgaaggc aaagagctga tccctgcaga tgctgttaaa ttcctaggtg      3180
     ttactatcaa caagaacttg tcatggtctg atcatgtgga ttgcttggta aagcggttaa      3240
     acagctttgt ctatgccatg agggtcttaa ataaaataac tgacttagca gtcaagaaaa      3300
     tggtttacca tgcatatttt ttatcagtgg tgagatacgg cataatattt tggggtgctg      3360
     aaaaaaccaa cctccwcaga gtgttcaagc tgcagaaaaa aatcatcaga gccatgacag      3420
     gagcagacaa caggcaatca tgcaaaccat tattcataag cctagactta atgacaattc      3480
     cttctttatt tatttatgag atagttctct ttgagataaa aaaaccacag cttttcgaag      3540
     gaaattcttt tacacatacg tacacaacaa gacataaatc acactatatg ttaccttgcc      3600
     acagacttag attatatgaa aatactccat attatatggc attaaagatt agaaataaga      3660
     tatggacaaa gttcaaggac tccaagactg acatcacagt aggaaacatt gaaaaatatt      3720
     taaaagcaaa tgttattaca gtctggatga ttttatgaat gagaattaag atgattttaa      3780
     atttctatac agttattaat cttgttttgt ttgcaaattc aaattgtttt tttgttcttt      3840
     tggtactgtg ttcctacacg taagttctct attatggaaa ttgtgtttgt atatttgcac      3900
     actttcaaac tgtaaaatta aacagaaata cttaaaagaa atctttaaat cagtaatgta      3960
     aaaataagat atgtaatgtg tgaagatata gttaaaatgc acttgcatat aagcatattt      4020
     gttgtactgt atacttatgt aggcatacaa ctgcatgact gacgagtcac catgttccaa      4080
     tcaaatgatt gtatataaca tgttatgtga caataaagat tctattctat tcta            4134
//
ID   Daphne-23_LMi repbase;    DNA;    INV; 3696 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3696
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3394-3394 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..292,296..637,603..1997,1925..3271)
FT                 /product="Daphne-23_LMi_1p"
FT                 /translation="LYLKQPQQLHKVGLPIIHSLVKCLKPQEQHQKIALSL
FT                 QCKTVSTPTTSPGRHPRRSYASALNTAATTPSSPVNTEETATVAVPSEEGG
FT                 GKSASFSSKFFSRKQSKEXHNITRXKTLKEVSGSSEVTKSISCNKQNKSFH
FT                 IMYHNVQSLTNKLQELEIILSSDLNADVICITEHWLEKHQIEALKIPGFHL
FT                 ATSFCRTTINMVGQLFLQNRITWWDSYFCKTEFKAMQSYSDLIKEKVFEMS
FT                 AIELTDKHLVIVTVYRSPDGDIEEFLCKFEMMLNIVEPTKKKIICGDFNVD
FT                 FLKSSNYKEELLYITKNFSLIPTVNTPTRITKHSKTTPDQIFIQGTFSSYN
FT                 SKVVKMGYSDHEAVLLTLELYSEKTPPIKMIECRDFSDGNIANFCNQLSQE
FT                 TWYEIFYETDVNKMFNTFHQTYKYYFDIAFPLQQRKLKPAKNKCWITNGIK
FT                 ISSTMKRYLHSYKKQNHLSLEMQHYIKEYNKIYRKVIKEAKKMGNDEYIRK
FT                 SKNKIQATWNIVRYETDTKPVAKSISLKLENRQVSEATTVANIFNDFFTKI
FT                 ADDLIQSNFQTPNLHHTVNYKSPKGSMFLKQVTGSELMLAMSSLKKLSCGF
FT                 DDIPDYIIKQTGYHIVEPLMHIINHSFSTGTFPNLLKIAKVTPLHKKGATD
FT                 DVNNYRPVAQLSGFSKISLKSSFLIDCQLQACSSAQWLLKNIFEKLFLNRL
FT                 LEFVNKNSLLSKHQHGFRKSRSTTTAIYEYLNSILKAVDEKEMATGIFLDL
FT                 SKAFDVIDHGILLHKLERKGIRGISNEWIKSYLTNRQQRVVLKQDTTIGNI
FT                 SRRSTYTSEKTTIKYGVPQGSTLGPILFLLYIDDLNDTVLAKQKTLFADDT
FT                 SILITGIDQKHLQQSTDTSLLELTHWFKINKLIINTEKTVAMNFHLSHQKQ
FT                 QNNHTLKINNRSLKLVDDVKFLGIYLQSDLKWNTHIKALTSKLSSICYMLR
FT                 ILSTSCNKEIVIQAYHTHFQSAIRYGVIFWGNAPCSHSVFKMQKRALRIIC
FT                 NMKKQESCRPLFPSLKILNLPCLYMFETIVFVKEYLGSTSAYQLNSSVHSY
FT                 RTRNDSNIHVSYARTSAYQKSVIHIGTQLYNHLPGNIKSIKEDSIFKNKLK
FT                 SFLMDHSFYSVDEYLSD"
XX
SQ   Sequence 3696 BP; 1390 A; 690 C; 584 G; 1030 T; 2 other;
     cctgtatctg aaacaacccc agcagcttca caaagtaggc ctaccaatca tacacagtct        60
     agtgaaatgt ctcaaaccac aggagcagca tcagaagatt gctctcagtc tacagtgcaa       120
     aacagtgtca acaccaacca cctctccagg aagacatccc agaagaagtt atgcaagtgc       180
     cctgaatact gctgctacaa ccccatcatc tcctgtaaat actgaagaaa cagcaacagt       240
     agcagtaccc agtgaagaag gaggaggaaa gagtgcctcc ttctcatcta aatgattttt       300
     tagtaggaag cagagcaaag aagwacacaa cataaccaga gmcaagacct taaaagaggt       360
     gagtggttca tcagaagtga ctaaaagcat tagctgtaac aaacaaaaca aatcttttca       420
     tataatgtat cataatgttc aatctctgac caacaaatta caagaactag aaataatatt       480
     gagttctgac ctgaatgctg atgtcatctg cataacagaa cactggctag aaaaacatca       540
     aatagaagca ctaaagatcc ctggtttcca cctagccact tcattctgca gaaccactat       600
     aaacatggtg ggacagctat ttttgcaaaa cagaatttaa agcaatgcaa tcatattctg       660
     acctgattaa agaaaaagta tttgaaatgt cagctattga acttactgat aagcacctag       720
     ttattgtaac tgtatacaga tctcctgatg gagacattga agaattcttg tgtaaatttg       780
     aaatgatgtt aaatattgta gaaccaacaa aaaagaaaat catctgtggt gactttaatg       840
     tggatttttt gaaatcttca aactacaaag aggaattact atacatcaca aagaatttca       900
     gtttaatccc cacagtaaat actccaacca gaatcactaa acacagtaaa actacaccag       960
     accaaatctt tattcaagga accttttctt catacaatag taaggtagtt aagatgggct      1020
     acagtgatca tgaggctgtg ttgttaaccc tagaattata ttcagagaaa acacctccca      1080
     ttaaaatgat tgaatgcagg gatttcagtg atggtaatat agcaaatttt tgcaatcaat      1140
     taagtcaaga aacatggtat gaaatatttt atgaaacaga tgtaaataag atgttcaaca      1200
     cctttcatca aacatacaag tactactttg acatagcctt cccactacag caacgtaaat      1260
     taaaaccagc taagaacaaa tgttggatta ctaatggcat taaaatctca agtacaatga      1320
     aaagatacct gcattcatat aaaaaacaaa accatctatc attagaaatg caacactaca      1380
     tcaaagagta taataagatc taccgcaagg ttattaaaga ggcaaagaaa atgggtaatg      1440
     atgaatatat ccgtaaatca aaaaacaaaa tacaggccac atggaacatt gtcagatacg      1500
     aaacagacac aaaacctgtg gctaagagta tttcactgaa gctggaaaat agacaagtat      1560
     ctgaggctac cacagtcgct aatatattta atgatttctt taccaagata gcagatgatc      1620
     ttatccaaag taacttccag acccctaatt tgcatcacac tgtaaactac aaatctccca      1680
     aggggtctat gtttctcaaa caagtcacag gcagtgagct catgctggca atgagctcac      1740
     taaagaaact ttcatgtggt ttcgatgata ttcctgacta cattattaaa caaacaggct      1800
     atcatattgt tgaacctctt atgcatataa ttaatcactc tttttccaca ggtacatttc      1860
     caaatcttct aaagattgca aaagtaaccc cattgcacaa aaaaggagct actgacgatg      1920
     ttaacaatta caggcctgta gctcagctca gtggcttctc aaaaatatct ttgaaaagct      1980
     ctttcttaat agattgctag agtttgttaa caaaaactca ttgctgtcaa agcatcagca      2040
     tggcttcagg aaatctagat ccacaaccac agcaatctat gaatatttaa attctatact      2100
     aaaagctgta gacgaaaagg aaatggctac tggaatattt ctggacctat ccaaagcgtt      2160
     tgacgttata gatcatggta tcctgttaca taagctggaa agaaagggaa ttagaggtat      2220
     atcaaatgaa tggattaaat cgtatcttac taatcggcaa caaagagtag ttcttaagca      2280
     agatacaacc attggaaata tttccagaag atcaacatac acatcagaga aaactacaat      2340
     taaatatgga gtgccacaag ggtcgacctt aggtccgatc ctctttctct tgtatataga      2400
     tgacctgaat gacaccgtac ttgctaaaca gaaaacttta tttgcggatg acaccagtat      2460
     tttaattaca gggatagacc agaaacacct tcaacaatct acagacacat cattattgga      2520
     gctaacacat tggttcaaaa taaataaact tataataaac actgaaaaaa cagtagccat      2580
     gaactttcat ttatctcacc aaaagcaaca aaataaccat acattgaaaa taaataacag      2640
     aagtttaaaa ttggtggatg atgtgaagtt cctaggaata tatctacaga gtgatttaaa      2700
     atggaacact catattaaag ctctgacaag taaactatca tcaatctgtt acatgctacg      2760
     gatactaagc acaagctgta acaaagaaat agtaatacaa gcgtatcaca cacatttcca      2820
     atcagcaatt agatatggag taatattttg ggggaatgca ccatgtagtc actctgtatt      2880
     taaaatgcaa aaacgagctc ttagaatcat atgcaacatg aagaagcaag aatcatgtcg      2940
     tccactcttc ccttctctaa agatactgaa ccttccatgc ctgtatatgt ttgaaacaat      3000
     agtgtttgta aaagaatatt tagggtctac cagtgcttat cagctaaaca gctctgtgca      3060
     cagttacaga acaagaaatg atagtaacat ccacgtctcc tatgccagaa catcagcata      3120
     tcagaaaagt gtcattcaca taggcacaca gctatataat cacctacctg gaaacattaa      3180
     gtcaataaaa gaagacagca tattcaaaaa taagctgaag tcatttctga tggaccacag      3240
     tttttactct gtggatgaat acctctctga ttaaaataga attttgtaat gaagaactgt      3300
     gacaaacata tatatgtaaa tttgtattac tgtgttaaag tgttctaata atatatgtga      3360
     aattgcatta atcctataac atttaatact tatctgtaaa attaattacc tgtgtttcat      3420
     ggtattcatt tattaagtgt gtttcacggt gtatattcat ttactaagtg taccagtact      3480
     taattttgag tcaatcatat tgtgtaaaac ctttcaccat tatattcatt tattacatat      3540
     accagaacat aagtcataaa ttgaaccata ttttatgtag gcctaactac gcttttttgt      3600
     tttgatttaa tgtcaatcat attgtataaa accttttgta aatacctcat gacaacatcg      3660
     attgcatgga catgcttaaa gatgaataaa taaata                                3696
//
ID   Daphne-24_LMi repbase;    DNA;    INV; 4137 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4137
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3395-3395 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(766..1221,1197..1958,1925..2047,2043..2177,
FT                 2107..2427,2414..4015)
FT                 /product="Daphne-24_LMi_1p"
FT                 /translation="MTHTNVLYVNIPHRHDLPPWSGVNKEISAANIRLSNI
FT                 CKQFKNVCIVDVCDIGRRFHTSHGLHLNKPGKRLVTRKLLEQIRRQQETSK
FT                 AQKAVQVPSPNPRTVESAPTQATEAEQSTAATEAEQSTAATEAEQLDTNQE
FT                 GKKDEISHLQTYSDKSPTNLQLSHCNFLFLNIQGLESKVEILEETIIQNKY
FT                 SFLCLSEHWLKPGQIEYYVPDGYKHGSSFSRSQYRNGGTAIYVSKGIEFRV
FT                 LDLSWACVEKHFEVTGIICDVMKIILVCIYHSPDADEKTFLDNLDNVLCYT
FT                 TRWKQHVTIIGGDINSSFDVTCNKPSVNRLLNILRQHNFHHVNSEPTRLKA
FT                 CLDNAFVNCARDMYSTNVKEFAFSDHSMLTVELKHYIKGDGNKVIQNTSKP
FT                 NNFILTKTISENQLYTNKNNLRKLMHQLSITNWDKLFQVWSNAQQCMKLSI
FT                 VTLLNSILKAHLVTKKHKKQGRLNCGTQKSWRIKKKPNAAKAPWQSKIVVH
FT                 KRVGESKKNLMLLKRLGKVNNSKEIKDLEIKSKKLYKKELQLAKQRYNTNL
FT                 IKNSKNQCKTAWSIINNIKGEIRNLDETIPIPADTFNKYFVSCADKIKKTD
FT                 QKKQISEPNITYVEYLNSANLNQNQARPSLKHFKEISQDDVLKVVKEMKNS
FT                 HSTDIYNMSNNLLKEIISTIAAPLTYTINLCIRDGVFPDSLKLSRVTPIFK
FT                 KGSKSEPVNYRPISLIPTLAKVFEGIMYQQMYEYLEVNDMLSTSQFGYRKG
FT                 KSTIHAIELLVSEILSAFEDHAHTQVTLCDLSKAFDCVDHSVLLYKLEYYG
FT                 MCGKSIKLLKSYLNNRKQVVSSGGYESKILEVQHGVPQGSKLGPLLFLVHI
FT                 NDLPANIHVKTYMYADDTTFLSVNNVFDNLVSSMNLAKENATSWFNANGLL
FT                 LNETKTQNMWFSLSKNNKIEKQNVKFLGIILDNQLTWNSHVEHIAARLSRV
FT                 TYLLKRLMGCVTFEYVRTAYFAFFQSVLRYGLILWGNSKKISEILVIQKKA
FT                 IRVIAKADNRTHCKPLFIKYKILTVINLYILDSVNFILADLPNLRIMNQRH
FT                 DHNTRICKSLILPQNRLAKTNNSHKYMSIKIYNKLSKHASSMPTKLFMKKL
FT                 HSFLLKNPFYTLEEFLEMPDINLNM"
XX
SQ   Sequence 4137 BP; 1599 A; 742 C; 734 G; 1062 T; 0 other;
     ggtgcctgtc gcatattaat aaaaaagcag aagaacagaa caagcgcttg cgaagtaaaa        60
     gtgcagtgac caactcgcaa atcccaagga aagcaaagac gaaattcttg agagattaca       120
     caaaagagaa attattaaca ttctgttgat gatatccaaa acgcagagga ctttaaaagc       180
     acaaatacga tgcatatcaa ccaaactggt taggccaaaa agtgttcaag tgcaatcaag       240
     agagtagtgc tttgaagcaa caaaacggtt atatgcaaat ggaaaactat tccaggtcca       300
     cctagccaca ctagatacaa aacatagctc cgggacagac tgtaataatg taacggtgaa       360
     acagagcagg tggtacattt ccattgcgga aaggagcgat aagaatgtta ttccaattgg       420
     atgcggtaac agcgcggaaa aatataccac acaaaaatta tcataacata gtaaattcgc       480
     gcaggaaaac tccactgcag tgcatacctg tgcccatgaa cacgtgcaaa gaactacaat       540
     tctaccgaca gcatggacgc gattgccaca cttgttaatg agcatcaaat ataaaaacta       600
     ctagttttgt caggccaggt gtctttcagc aataatcaat aatgtccaaa tggaagaaat       660
     ataagctact tcaaatgact tttagctctg tttggtggct ccaatgatgt gtacaaaaat       720
     gaagcatcaa cggcttgcag agaattagag aagcatctcg ctcatatgac ccatacaaat       780
     gttctctatg taaatatacc gcaccgccac gatttgcctc catggtctgg agtaaataaa       840
     gaaatttctg ctgcaaacat acgtctttca aacatatgca aacaattcaa aaacgtttgt       900
     attgtggatg tgtgtgacat tggtcgaaga tttcatactt cacatggact ccatctgaat       960
     aagccaggaa agaggcttgt tacaagaaaa ttattagaac aaattcgaag gcaacaagaa      1020
     acttccaaag cacagaaagc agtacaggta ccatcaccaa accccagaac agtagaatca      1080
     gcaccaacac aagcaacaga agctgagcaa tccacagcag caacagaagc tgagcaatcc      1140
     acagcagcaa cagaagctga gcaattggat acaaaccaag aagggaaaaa ggatgagata      1200
     agtcacctac aaacttacag ctaagtcatt gtaacttcct attcttaaac attcagggac      1260
     tagaaagtaa ggttgaaata ttggaggaga caataattca aaataaatat tcttttctct      1320
     gtttatctga acattggcta aaaccaggac agatagaata ttatgtacca gatggctata      1380
     aacatggaag cagttttagc agatctcagt accgcaatgg aggtactgct atctatgttt      1440
     caaaaggaat agagtttaga gtgctagatc ttagttgggc atgtgtagaa aaacactttg      1500
     aggttactgg aatcatatgt gatgtaatga aaattatatt agtatgtatt taccattctc      1560
     ctgatgcaga tgaaaaaact tttttagata atttagacaa tgtactctgc tacacaacaa      1620
     ggtggaaaca acatgtaact ataataggag gagacatcaa ctcaagcttt gatgtaacat      1680
     gtaacaaacc cagtgtaaat aggttactaa atattttaag gcagcacaac tttcatcatg      1740
     taaattcaga accaacaaga ctaaaagcat gcttggataa tgcttttgtc aactgtgctc      1800
     gtgacatgta ctccaccaat gtaaaggaat ttgctttctc agaccactcc atgttaacag      1860
     tagagttaaa acattatata aaaggggatg ggaacaaggt tatacaaaac acatcaaaac      1920
     ctaacaactt tatactaaca aaaacaatct cagaaaacta atgcaccagc tgagcattac      1980
     taactgggac aaattatttc aagtgtggtc taatgcccaa cagtgtatga aactttccat      2040
     agttacttaa tagtatttta aaagcacatc ttgttacaaa gaaacacaaa aaacaaggaa      2100
     ggctaaattg tggtacacaa aagagttgga gaatcaaaaa aaaacctaat gctgctaaag      2160
     cgccttggca aagtaaataa ttctaaggaa attaaggatc ttgaaattaa aagcaagaaa      2220
     ctgtataaga aagagctaca attggctaaa cagaggtaca acaccaatct tataaaaaat      2280
     agtaaaaacc agtgcaaaac agcatggtca ataattaata atattaaagg tgaaatcaga      2340
     aacctagatg agacaatccc aataccagct gatacattca acaaatattt tgtaagttgt      2400
     gctgacaaaa taaaaaaaac agatcagtga acccaatata acttatgtag aatatcttaa      2460
     cagtgcaaac ctaaatcaga atcaggccag accatcattg aaacacttta aagagatatc      2520
     ccaagacgat gttcttaaag ttgttaagga aatgaaaaat tcacatagta ctgacattta      2580
     taatatgtca aacaatctac taaaggaaat aatatctacc attgcagcac cactaaccta      2640
     tactataaac ttatgtatca gagatggggt ttttcctgac tctcttaaac tatccagggt      2700
     gactccaatc tttaagaagg gcagcaaatc tgagcctgta aactacaggc caatttcact      2760
     cataccaact ctagccaaag tctttgaagg tataatgtat cagcaaatgt acgagtatct      2820
     ggaagtaaac gatatgttaa gtacgtcaca gtttggttat aggaagggaa aatcaactat      2880
     acatgccata gaactgttag taagtgaaat tttatcagca tttgaggacc atgcgcacac      2940
     acaagtaacc ttatgtgacc taagcaaggc ctttgactgt gtggatcact ctgttttgct      3000
     atataaactt gaatactatg gaatgtgtgg caaaagtata aaactcctca aatcatatct      3060
     taacaatagg aagcaagtgg taagttcagg aggttatgaa tcaaagatac ttgaggttca      3120
     acacggagtg ccacagggct ccaaactagg tccgcttctg ttccttgtgc atataaacga      3180
     cttaccagca aatatccatg taaaaacata tatgtacgca gatgatacca cttttctgtc      3240
     tgtaaacaat gtatttgaca accttgtcag cagtatgaat ttggcaaaag aaaatgcaac      3300
     atcatggttt aatgcaaatg gcctactatt aaatgagaca aaaacacaga atatgtggtt      3360
     cagtctgtca aagaataaca aaatagaaaa acaaaatgta aaatttttag gtatcatcct      3420
     ggacaaccaa ctaacatgga actctcatgt tgaacacata gcggccaggc tgtcaagagt      3480
     tacatatctg ctgaagaggc tgatgggctg tgtgacattt gaatatgtaa ggactgcata      3540
     ctttgctttt ttccaatctg ttttaagata tgggttaata ctctggggaa acagcaaaaa      3600
     aataagtgaa atactggtga tccagaagaa agcaattaga gtaatagcaa aggcagacaa      3660
     tagaacacac tgcaaaccac tgttcattaa atataaaata ctaacagtta ttaacctata      3720
     tattcttgac agtgtaaact tcatacttgc agacctacct aatttaagga taatgaatca      3780
     gaggcatgac cacaatacaa gaatctgtaa gtctctaatc ctgccacaaa atagattggc      3840
     aaaaactaac aatagtcata agtacatgtc aattaaaata tataacaaat tgtccaaaca      3900
     tgcctcaagt atgccaacca aactatttat gaaaaagcta cacagcttct tgttaaaaaa      3960
     tccattctat acattagaag aatttcttga aatgcccgat atcaacttaa atatgtaaaa      4020
     atattatgta aaacttaaat atgtaaatat attatgtaaa acttttaggt taagtgaact      4080
     gacgaagtct attgcatgta atattgctga atgacgaata aagaatctga atctgaa         4137
//
ID   Daphne-25_LMi repbase;    DNA;    INV; 4317 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4317
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3396-3396 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(187..873,806..1009)
FT                 /product="Daphne-25_LMi_1p"
FT                 /translation="MVLHHVCDAYENKFRNEIREKDKIISALQSDMLSLNS
FT                 KYTALKNKCEVLEKKIQVFQLLEHNEESVVGLNKIDSTGIRPADVNINRAE
FT                 MICLTKCTSSNGDRNKYQETEKDFSASECPVNKGPTVKNRLHKRKVKLFGD
FT                 SHAHNISELLLNVNDSVSVSGIVKPGANFNNIMVGVKQECLDLTRNDSVVL
FT                 IGGANNVIKTKPVPLLRGCTLFYNSCCSTRHCNNFASKVEVVLYSTIPAVP
FT                 RVIVTTLPPRYDLPEWSCVNEEIRXTNLKLXFCAKXVNVTLTXTXMYERNC
FT                 FTLDV"
FT   CDS           join(1497..2399,2338..3579,3500..3931)
FT                 /product="Daphne-25_LMi_2p"
FT                 /translation="SCLVILMFIFLLVIMTEQIENLMNSFNLRTVVDFPTR
FT                 VTENCSSLIENFFLDSNRIDNISVTKILNGLSDHDGQLLKIHDVNPANKSS
FT                 PNSRSYRLINRENMETFNKHLEELHWEAVYHAKQVDDKFNLFLNELVTLFE
FT                 LFPKRTSRSNNQNDYKRQWLTRGIKTSCKTKRMLYVSVRNSNKPQDREHYK
FT                 LYCSILKNVIKKSKSMFIRSEIDNSNNKIKTIWKLLKRETGKASVDTDSIH
FT                 MYHKGNLVDKGDQVANILNNHFLSVTDQIGCKGSMAEAMNFLQKSGHRKIS
FT                 EMHVSYIQRTFYKNQGTEKLVRCMYPTSRDEIAKVICQMKNKNSTGVDNIS
FT                 IKILKHCHKSILKVLCHIFNESLNQGIVPSRLKYAIIKPLFKNGDKAEASN
FT                 YHPISLLTSLSKILEKLIFRRIMDHLNKHDILNKNQFGFQKGVSTEQAIFS
FT                 FVNQLLESLNNKMSPVGIFCDLSKAFDCVDHKILLSKAEHYGLKGKVGMWL
FT                 QSYLEDRKQKVVLNNSALEPSSSDWGTVKCGVPQGSVLGPLLFLIFINDLP
FT                 WCITQKAHFTLFTDDTTIMVDKVPDCNLDFTATKIFQEALDWFTANGLSLN
FT                 VKKTHFIQFHTANNKLENVEIKCDDKEILRVESSKFLGLYINNTLNWSVHI
FT                 TDLCKKKLSSAAFAIRSIASVXDREATKAAYFGYFHSLMMYGIIFWGNQAQ
FT                 ANSFYCTEKGNQNYECMASYSGETRHKQIVFIAQKKVIRIMSRVHPRSSCR
FT                 NLFKQLGILTMTCQYIFSLMCFVNKNPTIFKTNSAYHEHDTRNKHDFHKDL
FT                 KNLSMVQKGVHYSSIKVFNKLPSHIKSAIGDTTKFKNHLKHYLLDNSFYSL
FT                 QEFFDV"
XX
SQ   Sequence 4317 BP; 1508 A; 765 C; 772 G; 1266 T; 6 other;
     caagatggca ccgcatggta aagacgtaac tgaggtgtgt cccagcaaaa acgaagttaa        60
     aagtacgaat aactgcaaga tttgtgacaa gaaagtgtta aaaggtattc agtgttacag       120
     ttgtcatcgt tggtttcatg aaaaatgctc taaagtgaac ataaaattcg taactgttga       180
     ctatttatgg tcttgcacca tgtgtgtgat gcttatgaaa acaaatttcg aaacgaaatc       240
     cgagaaaaag acaaaataat cagtgcactt caaagtgata tgctttcgct aaacagcaaa       300
     tacaccgccc tgaagaacaa atgtgaagtt ttggaaaaga aaatacaggt ttttcaattg       360
     ttagaacaca atgaagaatc agttgtaggc ctaaacaaaa tagacagtac cggtattcgc       420
     cctgcagatg ttaacataaa tcgagctgaa atgatttgct taacaaagtg tacctcatca       480
     aatggagacc gcaataaata tcaggagact gaaaaagatt tttcagcttc tgaatgccct       540
     gtaaacaaag gcccaacagt gaagaatcga ctacacaaaa ggaaggtgaa actatttggt       600
     gatagtcatg ctcacaatat ttcggaactg ttgttaaatg ttaatgacag tgttagtgtt       660
     tctggcatcg tgaaacctgg tgcaaacttc aataatataa tggtgggtgt taaacaagaa       720
     tgcttggatc tcacaagaaa cgatagtgtt gtgctcatag gaggtgcgaa caacgtgata       780
     aagacgaagc cagtgccttt attaagaggt tgtactctat tctacaattc ctgctgttcc       840
     acgcgtcatt gtaacaactt tgcctccaag gtatgaccta ccagaatggt catgtgttaa       900
     cgaagaaatt agamttacga atctgaagct gagwttctgt gccaaattwg ttaatgttac       960
     gttgacakac accaakatgt acgaaagaaa ctgttttaca ctggatgtgt aaatgttagc      1020
     ctctaatgcc tcttgtcaat gaaaatagta gggcggcccc ttcacaggaa acagtagact      1080
     ccgggccgaa ataaaaggcg gggccgccgc ccaagcacca cccaatgttt tgaatctgct      1140
     tttcaaaata caatgggtcg ggattcaata acaatgcaca tatcctatgt ttcactgaac      1200
     accatatgaa ggaaagaatc gaaatgcgca actagagcat tacaaattag caacttttat      1260
     gttagaatac aatggaggag gatggagggt tatgtttatc agaaataata tagtgtacaa      1320
     gcccattgat gtaaaaaaat attgtgttga tcaacatttt gaggcctgtg catagaactt      1380
     ttgttaatac catgccagtt tatgtggtta cattcagagc tcctcaggaa agatcaatgt      1440
     attactaaag caagaaatct cttttaactt ccttatacca aaaaagaaag aattaatcat      1500
     gcttggtgat tttaatgttc attttcttac ttgtaataat gacagaacaa attgaaaatt      1560
     taatgaactc ctttaatctt aggacagttg ttgactttcc caccagagta actgagaact      1620
     gctcaagtct gattgaaaac ttttttttag atagtaacag aattgacaac atatctgtaa      1680
     caaaaatctt aaatggtctg tctgaccatg atggacaact gttaaaaatt catgatgtaa      1740
     accctgccaa caagagtagt cctaacagta gatcttacag attaattaac cgtgagaata      1800
     tggaaacctt caacaagcat ttggaggagc tacattggga agcagtatat catgctaaac      1860
     aggttgatga taaatttaac ctttttctca atgaattagt tacccttttt gaactatttc      1920
     ctaagagaac ttcaagaagt aacaaccaga atgattacaa gagacaatgg ctcacgaggg      1980
     gaatcaaaac atcttgcaaa acaaagcgaa tgctatatgt ttctgtcaga aattccaata      2040
     aaccccagga tagggagcac tacaagttat attgttccat cttaaagaat gttatcaaaa      2100
     aatctaagag catgtttatc agatctgaaa ttgacaattc taataataaa ataaaaacaa      2160
     tatggaagtt gttaaaacgg gaaacgggca aagcttcagt agatacagat agtatccata      2220
     tgtaccacaa gggaaactta gtagataagg gtgatcaagt tgctaacatc ctaaacaatc      2280
     actttttgtc agtaactgat caaatcggat gtaaagggtc tatggctgaa gccatgaact      2340
     ttttacaaaa atcagggcac agaaaaatta gtgagatgca tgtatcctac atccagagat      2400
     gaaattgcga aggtgatttg ccaaatgaag aacaaaaact ccacaggtgt tgacaatata      2460
     tctatcaaaa tattaaaaca ttgtcacaaa tctattctta aagttctgtg tcatattttt      2520
     aatgaatctc ttaatcaagg tattgtccct agtagactta aatatgcaat cattaaaccc      2580
     ctgttcaaaa atggtgataa agcagaggct tccaactacc atccaatttc attgctaacc      2640
     agtctgtcaa aaatcctaga gaaacttata ttcagaagaa ttatggatca tcttaataaa      2700
     catgacattc ttaataaaaa tcagtttgga ttccaaaagg gtgtttcaac tgaacaggct      2760
     atcttctctt ttgtaaacca acttcttgaa tcactaaaca ataaaatgtc accagtcgga      2820
     atcttctgtg atctgtcgaa agcattcgac tgtgttgatc acaaaattct acttagcaag      2880
     gctgagcact atggcctaaa aggtaaagta gggatgtggc tccagtcata tctggaggac      2940
     agaaagcaga aggtagttct gaacaactct gcattggaac cttccagttc tgactggggt      3000
     acagtaaagt gtggagtgcc acagggttcg gtgcttggtc ccctactttt cttaatcttc      3060
     atcaatgacc taccgtggtg cattacccaa aaagcacact ttaccctatt cacagatgac      3120
     acaaccatta tggttgacaa agtacccgac tgcaatctag atttcactgc gactaaaata      3180
     ttccaagaag ctcttgattg gttcactgca aacggtctgt ccctcaatgt caaaaaaact      3240
     catttcattc aatttcatac agcaaacaat aaactagaaa atgttgagat aaaatgtgac      3300
     gacaaagaaa tattgcgagt tgagtcctcc aaattcctgg gattatatat aaacaacact      3360
     ctaaactggt cagtccacat cactgaccta tgtaaaaaaa aacttagctc agcagcattt      3420
     gccattcgat caatcgcatc agtttktgac agggaagcaa ccaaagcagc ttactttgga      3480
     tacttccatt cacttatgat gtatggcatc atattctggg gaaaccaggc acaagcaaat      3540
     agtttttatt gcacagaaaa aggtaatcag aattatgagt agagtgcatc ccagatcctc      3600
     ttgtagaaat ttatttaagc agctagggat cctcaccatg acatgccaat acattttttc      3660
     tctgatgtgc tttgttaata aaaatcctac aatattcaaa acaaatagtg catatcatga      3720
     gcatgataca agaaataaac atgattttca caaggatcta aaaaatctca gtatggtgca      3780
     gaaaggagtg cattattcaa gcataaaagt cttcaataaa cttccctctc acatcaagtc      3840
     agccattggg gacacaacca aattcaaaaa ccatctaaaa cattatctgt tagataattc      3900
     tttttattct ctacaggaat tctttgatgt gtagtactcc atgtaatatc cttaatttta      3960
     tcattattaa aaaaactgag aaagcctcat tggtatttca cttgttggcg aacaattgtt      4020
     tcattaattt caatatttgt tttgttgtat aattagctgt gatactgttg gaagaacaat      4080
     tgttacaaaa atttcaagct tttttatgtt gtacgtgttg tgttattatc tgcattttta      4140
     tgagttatcc acattattac ctatcatgta ttatatgttt atattatata ttattttgat      4200
     tgtaagccac atgattaatt taatgtggat atttagtaat tatcttacct gacatgttct      4260
     acatccttgt gattcactcg catatgggat ccatggaacc aaagataaat aaataaa         4317
//
ID   Daphne-26B_LMi repbase;    DNA;    INV; 3486 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-26B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3486
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3397-3397 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(300..602,601..843,836..1174,1158..1904,
FT                 1926..2162,2150..2515,2425..2904,2837..3172)
FT                 /product="Daphne-26B_LMi_1p"
FT                 /translation="MLFHQNVQSLNNKLSEIKIMLSNELIDVSVLCMSEHW
FT                 LRDDALQTVSILNYELAAYTCRQQILGGGICIFVKKGLKKSFFFFLFFFFF
FT                 FFEISAIELPSLRDNFNMHLQIPNGDIKTFYQNLENTLTQTVKNKQTIIIC
FT                 GDFNIDFKGSAKEKTDLMNILVSHTLKITIHSPTREIVTLSLQVYNRSNNN
FT                 KPTKEQYKAEAVKTGLGDHHGQTISFHIKGIEVNKLTSTYKTRTYNDQEIE
FT                 IFKNLLKSESWEQIYDTSTENISEKFDIFIEKIKYYFDVVFPVKTRRLKDT
FT                 LPKKIPSQNKWITTGIRISCANKRFLYRLTKTCDTTPAFDRYFKNYKTVLR
FT                 KVIKSAKKLENDRYISNSSNKMKAVWNIVKKETGNNKTKNKNIQLKENQQT
FT                 TSKPKEVANMFNTYFINIAEKLIEKNVIKNPSQLATKIKHIDKTIFLTPTN
FT                 TKEVQQEIKLLKSKHSSGIDNIPDFIVKKCADFLSEPLTYLINLSFSTGSF
FT                 PKCLKIAKVKPLHKKGSQEEVSNYRPVSQLSAFSKXLEKLFIKDCPISQNP
FT                 NMVLEKNHSTETAVFSFLYETLQALDRREHTTSIFLDLSKAFDTINHNKLL
FT                 SKIQNWGLGAAHXXIKSNPHDRKQFQKAVLIEITYESNGTVSTYHSDSLVV
FT                 KHGVPQGSILGPILFLLYVNDLYINNTNGKLYQFADDTSILITGSTKEIFE
FT                 SNIAAITKNIRDYFDANGLIINVEKPLQWIYLRHRIDHQLTQILICKWPDN
FT                 KCGKTVAMDIFTTQNRSPANPNIDINGKTIEKTECTKFLGIWIQQNIKWDS
FT                 HVDYINRKLSKTCYIMRTLKNSISYNNLKSIYFAYAHSQMKYGIVFWGNSG
FT                 ASMKTFRIQKKIIRIMEGVDQRTSCKPLLKRNTPTSKHVHNGKPNYYKRKI
FT                 KKEILPLPSMYIMENLIIIKEKLNSKSPCITRNETVHCHNTRQKNNVHVKQ
FT                 TNTALFQKGVLHPGIRLYNALPKAIKSKTDTTKFKTAVKDYLVMHCFYSVD
FT                 EYLEFQNYSIS"
XX
SQ   Sequence 3486 BP; 1432 A; 562 C; 545 G; 944 T; 3 other;
     tgcatgaaca gtgtaatact ttaagagcaa tatttttgga cctaaattca tttacagtaa        60
     gtgtctagca caagatggac tgcatctaaa taggctaggc acaaatactt gtagcaaagt       120
     attggagatg tatgtgtgtg ataaaaacaa gggaaactaa tgtataggca gggggtgaaa       180
     atccagacaa gaatacaaaa agactacaac ctctgtgaac tagagcatgt actagagata       240
     tttaaggaaa acaaagtaag tgccaaccaa gtaatcagaa aaaagtgtat tattatttta       300
     tgctgttcca tcagaatgtt cagtctctaa acaataagtt gtcagaaata aaaataatgc       360
     tttcaaatga attaattgat gtgtctgtac tgtgtatgtc tgaacactgg ttaagagatg       420
     atgctttaca aacagttagc atcctaaact atgaattggc agcctacact tgcaggcagc       480
     aaatccttgg tggtggaatc tgcatttttg tgaaaaaagg attaaaaaaa tctttttttt       540
     tttttttgtt tttttttttt tttttttttg aaatatcagc catagaacta ccatcactaa       600
     gataacttta acatgcatct acagattcct aatggagaca taaaaacctt ttatcaaaac       660
     ttggaaaaca cattaactca aacagtaaag aataagcaaa ctattatcat ctgtggtgat       720
     tttaatatag actttaaggg ctctgcaaaa gaaaaaacag atttaatgaa tatactagtc       780
     tctcatacct tgaaaatcac aatacactcc cccacacgag aaatcgtcac actaagtcta       840
     caatagatca aataataata aacccactaa agaacagtat aaagcagaag cagtaaagac       900
     aggactcgga gaccatcatg gacaaaccat aagtttccac ataaaaggta ttgaagtaaa       960
     caaactgaca agcacatata aaaccagaac ctacaatgac caggaaattg aaatatttaa      1020
     aaatctttta aaaagtgaat catgggagca aatttatgat acaagtactg aaaacatatc      1080
     tgagaaattt gatatattta ttgaaaaaat taaatattat tttgatgtag tatttccagt      1140
     taaaactagg agattaaaag ataccctccc aaaataagtg gatcactacg ggtattagaa      1200
     tatcatgtgc aaataaaaga ttcctgtaca ggcttaccaa aacatgtgac acaacacctg      1260
     catttgatag gtatttcaag aactataaaa ccgttctcag aaaggtaata aagagtgcca      1320
     aaaagctaga aaatgacaga tacataagta attcctcaaa taaaatgaaa gcagtttgga      1380
     atattgtaaa gaaagaaaca ggaaataaca aaactaaaaa taagaacata cagctgaagg      1440
     aaaatcagca aaccacaagc aaaccaaagg aagtagccaa tatgtttaac acttatttta      1500
     taaatatagc agaaaaactt attgagaaaa atgtcatcaa aaatccatca caattagcaa      1560
     caaaaattaa acatatagat aaaactatat tcctcactcc aaccaataca aaggaagtgc      1620
     agcaggaaat caagctacta aaatcaaaac actcatcagg aatagacaac ataccagatt      1680
     ttattgtaaa aaaatgtgca gactttctct ctgaaccact gacctatcta attaatttgt      1740
     ccttctcaac tggtagtttt ccaaaatgct taaaaattgc taaagtgaaa ccacttcaca      1800
     aaaaaggaag tcaggaggag gtgtccaact atagaccagt atcccaatta tcggcattct      1860
     caaaawtact agaaaaactt tttataaaag actgtccaat ttcttaagta aatataatat      1920
     attgacagaa tcccaacatg gttttagaaa aaaatcactc aactgaaacg gcggtttttt      1980
     cttttctcta cgaaacgcta caggctctag ataggcggga acataccaca agcatattcc      2040
     tagacctgtc aaaagcattt gataccatta atcataataa attacttagt aagatacaga      2100
     attggggatt aggagcagca catamctkga ttaaatcaaa ccctcatgac agaaagcagt      2160
     tctgatagag atcacatatg aatcaaatgg cacagttagt acctatcatt ctgattcatt      2220
     agtagtaaaa catggagttc cgcaaggctc aatattgggt ccaattctct ttttattgta      2280
     tgtgaatgat ctttacataa acaatacaaa tgggaaactt taccaatttg cagatgacac      2340
     tagcatctta ataaccggaa gtacaaaaga aatctttgaa agcaacatag cagccattac      2400
     taaaaatatt agagattatt ttgatgcaaa tggcctgata ataaatgtgg aaaaaccgtt      2460
     gcaatggata tatttacgac acagaataga tcaccagcta acccaaatat tgatataaat      2520
     ggaaaaacaa ttgaaaaaac ggagtgtaca aaatttctag gaatatggat ccagcaaaat      2580
     ataaaatggg attcgcatgt agattatatt aatcgaaagt taagcaaaac atgttatatc      2640
     atgcggacat taaagaacag catatcatac aataacctaa agtccatata ttttgcctat      2700
     gcccactcac aaatgaaata cggtatagta ttttggggaa atagtggagc aagtatgaaa      2760
     acatttagga tacaaaaaaa gattattaga ataatggaag gagtggacca aagaacatca      2820
     tgcaagccac tgttaaaaag aaatactccc acttccaagc atgtacataa tggaaaacct      2880
     aattattata aaagaaaaat taaatagtaa aagtccatgc atcacccgta atgaaacagt      2940
     acactgccac aacacaagac aaaaaaataa tgttcatgtt aaacagacaa acactgcatt      3000
     atttcaaaaa ggagtactac accctgggat tagactatat aatgctttac ccaaagccat      3060
     aaaatcaaaa acggacacaa ccaaattcaa gacagcagtc aaggattact tggtgatgca      3120
     ctgcttctat tcagtagatg aatatttaga gtttcaaaat tatagcatca gctagaaatg      3180
     taggtctatg ataaagtgtg tagagaaaat gtaaatttac tattagttat tacgatgtat      3240
     ttatttatat aaaaaatgta atcatgctgt gtaaaagtgg caaatatcca ttttattcaa      3300
     tatgtagagt aacaaaaatt ctagcagtga aaaacattat gtggtaaatc gtaccaagta      3360
     aaatgttaat ctacttttaa tattacaaca caagaaaaga aatatgttag gccagaaatg      3420
     gtccaatatc tattgtaccc tgtacagttc tggattcaca ggaccaataa ataaataaat      3480
     aaataa                                                                 3486
//
ID   Daphne-26_LMi repbase;    DNA;    INV; 4057 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4057
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3398-3398 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(193..492,435..593,568..1926,1862..2740,
FT                 2683..3168,3114..3401,3316..3822)
FT                 /product="Daphne-26_LMi_1p"
FT                 /translation="MPSAKNNPKNAQNEMDKDSKCVKSNVYKWTNVKNTNQ
FT                 IEKQEERKCAVNEFLIIGDSLMKNIVVRCSVDVRPGIRTHQMHKHLKNIWF
FT                 AKQDTKEIGPTATSKKYLVCQTRHKRNWAYCLNKIPYIKVSLCMWGQILST
FT                 FAVKVTFKRNEESNPLNETRNLIRTTKNIYPGSKIVISGILHRRSVSDSYI
FT                 DKINDSVREQCNTLGAVFLDLNKFIDSKCLAQDGLHLNRLGSSTCSKVLAD
FT                 VCTIIKKQGKLVCSAGGEKLFKNTGSYRSSGSDELEHLLERCNENKTKVSA
FT                 QPSNPEKMAYHFMLFHQNVQSLNNKLSEIEIMLSDELIDVSVLCMTEHWLR
FT                 EDTLQTVNITDYELAAYTCRKQLHCGGICIFVKKGLRYKQLEQLNTLNNEX
FT                 DFEISGIELTSLKTTIICLYRSPDGDIKTFLHNIENTLIQTVKNKQTIIIC
FT                 GDFNIDFKGSDKALTELMNILVSFNLKITIHSPTRETCHSKSTIDQIIVNS
FT                 TQEQYKAETVKTGLGDHYGQTISFHIKSDKDNKQTSTYKTRLYNDQEIELF
FT                 RNFLKSESWDQIYDTSTGDISEKFDIFIDRVKYHFDIAFPVKTRRTKNSLP
FT                 KKMDHCRYHFQLKLGGQKIVSQKKWITVGIRISCANKRFMYRITKMCDTTP
FT                 DFDRYFKNYKTVLKKVIKSAKKLENDRYIRNASNKMRAMWNIVKKETGNNK
FT                 TKIKNIQLNENMQTTSKPKDVANMFNSYFINVAEKLVEKNVTHNPPSQVAS
FT                 KIKQVDKSIFLIPTNVQEVQQEIKLLKSKHSSGIDNIPDFLVIKCVDLLSE
FT                 PLTHLVNLSFSTGSFPTCLKIAKVKPLHKKGSQEEVSNYRPVSLLSVFSKI
FT                 LEKLFYKRLSNFLCKHNILTESQHGFRKNHSTETAVFSFFMKHCRPKKSLN
FT                 RNRGLFFLYETLQALGKREHTTSIFLDLSKAFDTINHEKLLCKIQNWGIRG
FT                 TAHNWIKSYLHSRKQLIEIAHEANGTVSTYHSDLLEIKHGVPQGSILGPVL
FT                 FLLYVNDIYINSTNGKVYQFADDTSILITGSEKESFESNIATVTKTLEITL
FT                 MQMVKQHSNCHKNIRDYFDANGLIINLEKTVAMDIYTTQNRSPANPHIEIN
FT                 GKTIKKQSAQNFLEYGSSRIEMGYTCTIYQQKTKYNMFHHTNIKELHIVKW
FT                 GTHVQYINKKLSTTCFIIRTLKNCILYDNLRSIYFAYAHSQMKYGIVFWGN
FT                 SGVSLKTFKIQKKIIRIMGGVDQRTSCKPLFKKNKILPLPCIYILENVIII
FT                 KEKLNRSSPCITLNESIHSYHTRQRNDVHVKQTNTTLFQKGILHLGIKLYN
FT                 ALPKAIKTVSHKQI"
XX
SQ   Sequence 4057 BP; 1650 A; 680 C; 673 G; 1053 T; 1 other;
     ctcaggggaa acgaacatat ttgacgctgt taaatacgtg aatacgaaat tatccacgga        60
     aaatcgaccg ttttctgaaa ccaagtgaag tgaatggaga aataaactgt ccattgaaaa       120
     tcgttcgtcc tctcagacga taaatctaca aaagaatgtg aacaaagcag ttctattcag       180
     gttcaaaata taatgccgag tgcgaagaat aaccctaaaa atgcgcaaaa tgaaatggac       240
     aaggactcaa aatgtgtgaa atcgaatgta tacaaatgga caaacgtaaa aaacaccaat       300
     cagatcgaga aacaagaaga aagaaagtgt gcagtaaatg agtttcttat aattggcgac       360
     tctctcatga aaaatattgt tgtgcgctgc agtgtagacg ttcgtccggg catcagaaca       420
     catcagatgc ataaacatct aaaaaatatc tggtttgcca aacaagacac aaaagaaatt       480
     gggcctactg cctgaacaaa ataccatata taaaggtatc attgtgcatg tggggtcaaa       540
     ttctctccac ttttgcggtg aaagtgacct ttaaacgaaa cgaggaatct aattagaaca       600
     acaaaaaaca tctaccctgg atccaagata gtcatcagtg gaattctgca cagaagatca       660
     gtgagtgaca gctacataga caagataaat gacagtgtgc gagaacaatg taatacttta       720
     ggagcagtat ttttagacct caacaaattc attgacagta agtgcctagc acaagatgga       780
     ttgcacttga atagattagg ctcaagtacc tgtagtaaag tactggcaga tgtgtgtaca       840
     ataataaaaa aacaagggaa actagtatgt agtgcagggg gtgaaaaact attcaagaat       900
     acaggaagtt atagatcttc tggctctgat gaactagagc atctactaga aagatgtaat       960
     gaaaacaaaa caaaggtaag tgctcaacca agtaatccag aaaaaatggc ctatcatttt      1020
     atgctgttcc atcagaatgt acagtccctt aacaataagt tatcagaaat tgaaataatg      1080
     ctttcagatg aattaattga tgtctctgta ctgtgtatga ctgaacattg gttaagagag      1140
     gatacattac aaacagtgaa cataacagac tacgaattgg cagcctacac ttgcaggaag      1200
     caactccact gtggtggaat ttgcattttt gttaaaaaag gattaagata taaacagcta      1260
     gaacagttaa atacactaaa caatgaaaak gattttgaaa tatcaggcat agaactaaca      1320
     tcacttaaaa caaccataat atgcctctac agatctcctg atggagacat taaaaccttt      1380
     cttcacaaca tagaaaacac tttaatccaa actgtaaaaa ataagcaaac tattatcatc      1440
     tgtggtgatt ttaatataga ttttaagggg tctgataaag cattaacaga attaatgaac      1500
     atcctagtct cttttaactt gaaaatcaca atacactccc ccacacgaga aacttgtcac      1560
     tcaaagtcca caattgacca aataatagtt aactctacac aagaacaata taaagcagaa      1620
     actgtaaaga caggacttgg agaccattat ggacaaacca taagtttcca tataaaaagt      1680
     gataaagata ataaacagac aagtacatat aagactagac tttacaatga ccaggaaatt      1740
     gaattattta gaaatttttt aaaaagtgaa tcatgggatc aaatttatga tacaagtact      1800
     ggagacatat ctgagaaatt tgatatattt attgacagag ttaaatatca ttttgatata      1860
     gcatttccag ttaaaactag gaggacaaaa aatagtctcc caaaaaaaat ggatcactgt      1920
     aggtattaga atatcatgtg caaacaaaag attcatgtac agaattacca aaatgtgtga      1980
     cacaacacct gactttgata ggtattttaa aaactataaa acagtgctca aaaaggtaat      2040
     aaaaagtgcc aaaaagctag aaaatgacag atacataaga aatgcatcca ataaaatgag      2100
     agccatgtgg aatattgtaa agaaagaaac gggaaacaac aaaactaaaa ttaagaacat      2160
     acagttgaat gaaaatatgc aaactaccag caaaccaaaa gatgtagcta atatgttcaa      2220
     cagttatttt ataaatgtag cagaaaaact tgttgagaaa aatgtcaccc ataatccccc      2280
     atcacaagta gcttcaaaaa ttaaacaggt agataaatcg atatttctca tcccaaccaa      2340
     tgtacaggaa gtgcagcagg aaatcaaact tctaaaatca aaacactcat cgggaataga      2400
     caacatacca gattttcttg taataaaatg tgtagactta ctttctgaac cactgactca      2460
     tcttgtaaac ctgtccttct caactggcag ctttccaaca tgtttaaaaa ttgctaaagt      2520
     caaaccactt cacaaaaaag gaagccagga ggaggtgtca aactataggc ctgtttccct      2580
     cttatctgta ttttcaaaaa tactagaaaa actattttat aaaagactgt ccaatttctt      2640
     atgtaagcat aatatactaa ctgaatccca acatggtttt agaaaaaatc actcaaccga      2700
     aaccgcggtc ttttctttct ttatgaaaca ctgcaggccc taggtaaaag ggaacataca      2760
     acaagcatat tcttagacct atcaaaagca tttgatacca tcaatcatga gaaattactt      2820
     tgtaagatcc agaactgggg tatcagagga acagcacata actggattaa atcatacctc      2880
     catagtagaa aacaactcat tgagatagca catgaagcaa atggcacagt cagtacctat      2940
     cattctgatt tattggagat aaaacatgga gttccccaag gttcaatatt aggtccagtt      3000
     ctctttttac tgtatgtaaa tgatatatac ataaacagta caaatggaaa agtttaccaa      3060
     tttgcagatg acactagcat tttaattaca ggaagtgaaa aagaaagctt tgaaagcaac      3120
     atagcaactg tcacaaaaac attagagatt actttgatgc aaatggtcta attataaatt      3180
     tagaaaaaac tgttgcaatg gatatatata ccacccagaa caggtcacca gctaatcccc      3240
     atattgaaat aaatgggaaa acaattaaaa aacagtcagc acaaaatttc ttggaatatg      3300
     gatccagcag aatagaaatg gggtacacat gtacaatata tcaacaaaaa actaagtaca      3360
     acatgtttca tcatacgaac attaaagaac tgcatattgt atgataatct aagatccata      3420
     tattttgcat atgcccactc acaaatgaaa tatggcatag tattttgggg aaacagcgga      3480
     gtaagtttaa aaacttttaa aatacagaaa aagattatta gaataatggg aggggtagac      3540
     caaagaacat cttgtaagcc actgtttaag aaaaataaaa tactcccact tccatgcatt      3600
     tacatattag aaaatgtaat tattataaaa gaaaaattaa atcgtagtag tccatgcatc      3660
     actcttaatg aatcgataca cagttaccac acaagacaga gaaatgatgt tcatgtaaaa      3720
     cagacaaata caacactatt tcagaaggga atactacatc ttggaattaa actatataat      3780
     gctttaccca aagccataaa aacagtaagt cacaaacaaa tttaaaattg ccatgaagga      3840
     ttacttggtg aagcactgtt tctattcagt agatgagtac ctagaggaaa aaagttcagt      3900
     accagctaaa atagtatagt aaaatgtata gaccaaaaaa gaaacaaagt ataatgtaaa      3960
     tttactttta gttattgtga tgtatgttga aatggtccaa tatctactgt actcagtaca      4020
     gtcctagatt cacaggacca gtaaataaat aaataaa                               4057
//
ID   Daphne-27_LMi repbase;    DNA;    INV; 4259 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 19.12, Created)
DT   17-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4259
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3399-3399 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(488..703,687..935,998..1282,1311..1448,
FT                 1456..1596,1639..2706,2696..3097,3096..3719,
FT                 3509..4096)
FT                 /product="Daphne-27_LMi_1p"
FT                 /translation="MDKTKQVNNTNRMQKQNTRLECIIETAPAFVTDHSSN
FT                 KISVKTTVDDSPVVSNVKNIAAVASSSIINKESINTKKALIESNSNVENKP
FT                 STHVNNLMEEKSSVNWKEENNKQEGRTYSSVLKQKTDLSKXLQTQHMKISC
FT                 QTGLWYKRENLVNSVLVLMVKKECSVETKKAWFHLSKLRAGTTAEMVTTFL
FT                 TNTFPNHNSFTVEKLETKGVTNSFKIAVDFELKDKIMDKNIRPKNVAVRFF
FT                 LFRRMPAPCKRNGSMKKSRLSNCQVNVQCLQTKFDALSLFIDEVDPMFYVF
FT                 VNTGTKNCVLHLHEYLELRSAWLERLQFMVECVCYVSKQYSAKKIYLEKLL
FT                 YEHIVVSVYRSPDGNFEIFIDQLESCLHYLIHTGAKIALCGDFNIHISENS
FT                 VRVQTFMNLISSFGLFVTNFLPTNLNSWDYKISVIEPMLADHKAVIMELWE
FT                 KTVSNQDIPTWHCNYVFSNRVITVGGLDALKTSLSAVEWRQLIDDKKPSDA
FT                 FSSMFLTLKEKFDEAFPTKHKKHPTGKTKGMQKIVKEKLWYTPKLGNIKCI
FT                 VHILNDQVKAATDAALKNKLYYSYLHAKRIYRKEVEQAKRESNVRFIERAQ
FT                 NPCKAAWDLVNEHRKKPTSCANTCSPDEFNKYFIGIVERTVGELPDSLLDP
FT                 RNFVKPKNQCSIQNWKRVCPKDVVKIVKMYKSSTSPDIYGMTSTVLKKHYK
FT                 NIISEIAQPLTDVINKCLSAGEFPDFLKVARTVPIYKKGDPSDVSSYRPIS
FT                 IIPVLAKVMESLMKHQLLTYFEENNLFNDAQHGFRKGKSTTTAVLDLIKKI
FT                 NQAFEERESVALVLCDLSKAFAFHIRSYLVNTKILRDWRSYPGNPQFHLTD
FT                 RRQAVSVKGAVSCEERLQYGVPQGSVLGPLLFLIFVNDISSNGHILQFADD
FT                 TTLFASGKTDILAMQQANVLFNEAKEWFNANKMKINENKTQRMACSLSDIG
FT                 SLDNGGAVKLLGFSIDSKLTWKDHTMHVCVKLSRVLYLLRKLKSVITEQYL
FT                 LTVYYALFHSHINYGLLLWGHAAGCRNVLLLQKKQQQINLERSHYACVCQT
FT                 VKSPLPIEKTEKCHNRTIPANCLLCIIPQPYQLWTVAMGPCCRMQECATVA
FT                 EKAVRIITSSKNTDHCKPIFAKLGVMTVYSQYVFNCLIHVKLNQNTYSKRH
FT                 HIHHHNTRNKDCIDEQRCRLAKTQDSFPVAAVKMFNTLPNSVQSLPMELFK
FT                 TKVLSNLKEHPLYSVDEFFSSDRTVIT"
XX
SQ   Sequence 4259 BP; 1539 A; 735 C; 863 G; 1121 T; 1 other;
     ggcaagatgg cgcccagtga gagcttattt tgtgctaagt gcgagaaaaa cgtaaaggtt        60
     acagaattta gtgttttttg tggactatgg tgcagaaaat cccaatgtgt gggcatcagc       120
     aacactgaag atcgcattgt aaaatgttca aaaggtcgct taaaatatgt ttgtgaacac       180
     tgttaagtga ggttaggtga cgaaatctca gaagacacaa aaatggcaca acatgaacaa       240
     actttagata ccaagcagca aggtgaggca gatttacttg cattagtgaa taatctcagt       300
     gaaatagtga aaaaagttgt gagtgataac aaacaaataa aagagaaatt agatactgtg       360
     attactacaa accataggtt agaaatgttg ttgccacact cggtaaaaca aagtgatgaa       420
     acatcaaaat cgacgaaaac cgtgcccagc aatatgtgga ggtagtggaa aatgatgtgc       480
     caatgttatg gacaaaacta aacaggtaaa taacacaaat cggatgcaaa agcaaaatac       540
     aagactagaa tgtataatag aaacagcacc agcctttgtc actgatcata gcagcaataa       600
     aatatctgta aaaacaacag tagatgactc cccagtcgta agtaacgtca aaaacattgc       660
     tgcagtggca tctagctcaa ttataaacaa agaaagcatt aattgaatca aactccaacg       720
     ttgaaaacaa accaagtaca catgtaaaca atctgatgga ggaaaaatct tcagtcaact       780
     ggaaggagga gaataacaag caagaaggta gaacatattc cagtgtactt aaacaaaaaa       840
     cagacttatc aaaacmacta cagacacaac acatgaaaat aagttgtcag acaggactgt       900
     ggtacaaaag ggaaaatctg gtgaacagtg tactttaatg cctgctacac aaatgtcagg       960
     aaatattagt actaaaacca aagtaaagtt ataataggta ctaatggtga aaaaggaatg      1020
     ctctgtggag acaaaaaaag cctggttcca ccttagcaaa ctaagagctg gtactacagc      1080
     tgaaatggtt actactttcc taacaaatac tttcccaaat cataatagtt tcacagttga      1140
     aaaactggaa acaaagggag tgacaaatag ctttaaaatc gctgttgatt ttgagctaaa      1200
     ggataaaata atggacaaaa atatacggcc taaaaatgtt gcagtaagat tttttttatt      1260
     ccgaagaatg ccagctccat gttaaattct caggatcaag aacctagtaa aagagaaatg      1320
     gcagtatgaa aaaaagcagg cttagtaatt gccaggtaaa tgtgcagtgc ctccagacaa      1380
     agtttgatgc actgtcgctt tttattgatg aagtagaccc gatgttctat gtatttgtga      1440
     acactggcta gctaaaccaa aaactgtgta ctacacctcc atgaatatct ggaattgaga      1500
     agtgcatggt tagagagact acagttcatg gtggagtgtg tgtgttatgt tagtaaacag      1560
     tacagtgcca agaaaattta tttagaaaaa cttctgtagg gacatggatc tagaactggc      1620
     cgctgtggag ctacctaata tgaacatatt gttgtttcag tgtaccgttc cccagatggg      1680
     aactttgaaa tctttattga ccagttggaa agctgtctgc attaccttat ccacacggga      1740
     gcaaaaattg ctttatgtgg tgattttaat atacatatta gtgaaaatag tgtcagagtg      1800
     caaacgttta tgaaccttat aagcagtttt ggactttttg tgacaaattt tttaccaact      1860
     aatttaaata gttgggacta caagataagt gtgatcgagc caatgcttgc agatcacaaa      1920
     gcagtgatta tggagctgtg ggaaaaaact gtgagtaatc aagatattcc tacatggcat      1980
     tgtaactatg tattcagtaa tagggtcatc acggtgggag gattggatgc tctcaaaact      2040
     tcattgtctg ctgttgaatg gagacaatta attgatgata agaaaccaag tgatgcattc      2100
     agtagtatgt ttctgacact taaagaaaaa tttgatgagg catttccaac aaagcataag      2160
     aagcatccta caggcaaaac aaaaggaatg caaaaaattg tcaaggaaaa gttgtggtat      2220
     accccgaaat tgggaaacat aaaatgtatt gtacatattt tgaatgacca ggtaaaagca      2280
     gctacagatg ctgccttaaa gaataaacta tattacagtt acctacatgc taaaaggatc      2340
     tacagaaagg aagtagaaca agcaaaaaga gaaagcaatg ttagattcat tgaaagagcc      2400
     caaaatccct gcaaggctgc atgggaccta gtcaatgaac ataggaaaaa acccacctct      2460
     tgtgcaaaca cctgtagtcc agatgaattt aataaatact ttataggaat agtggaaaga      2520
     actgtaggtg aattgcctga ctcactatta gatcccagaa actttgtgaa accaaaaaat      2580
     cagtgtagca tacaaaattg gaagagggta tgtcccaaag atgttgtgaa aattgtaaaa      2640
     atgtataaat catcaacaag ccctgatatt tatggtatga ccagcacagt attaaaaaaa      2700
     cattattagt gaaattgctc aaccattaac tgatgtaatc aacaaatgcc tatctgctgg      2760
     tgaattccca gacttcctga aagtggcacg cacagtaccc atttataaaa aaggagaccc      2820
     aagtgatgtc tcaagctata ggcctatctc cataatccca gtgctggcta aggtgatgga      2880
     atctctaatg aaacaccaac ttctaactta ttttgaagaa aacaacctct ttaatgatgc      2940
     acagcatggt tttcggaagg gtaagtctac gacaacagca gttctagacc tgattaagaa      3000
     aataaaccaa gcatttgaag aaagagagtc tgtagccctt gtactttgtg atcttagtaa      3060
     agcctttgca ttccacataa gatcctactt agtaaactaa aatcctacgg gattggagga      3120
     gctaccctgg caaccctcaa ttccatctaa ctgacagacg tcaggccgtg tcagttaaag      3180
     gagcagtctc atgtgaagag agattgcaat atggtgtacc tcaaggatct gtactagggc      3240
     ctctgttatt tctaattttt gttaatgaca taagctcaaa tggtcacatt ttgcagtttg      3300
     cagatgacac aacactgttt gctagtggaa agactgacat actggcgatg caacaagcta      3360
     atgttctgtt caatgaagcc aaggaatggt ttaatgctaa taaaatgaaa ataaatgaaa      3420
     acaaaacaca gagaatggca tgtagcctca gtgacattgg atcactggat aatggtggag      3480
     ctgttaaact tctgggattc tccattgaca gcaaattaac ttggaaagat cacactatgc      3540
     atgtgtgtgt caaactgtca agagtcctct acctattgag aaaactgaaa agtgtcataa      3600
     cagaacaata cctgctaact gtttactatg cattattcca cagccatatc aactatggac      3660
     tgttgctatg gggccatgct gcaggatgca ggaatgtgct actgttgcag aaaaagcagt      3720
     gaggataatt acttccagta aaaatacgga ccactgtaaa cctatctttg ctaagctagg      3780
     tgttatgact gtttacagtc aatatgtgtt caactgcctc attcacgtga agctgaatca      3840
     aaacacttat agtaagagac atcacattca tcaccacaac acccggaata aggactgtat      3900
     agacgagcaa aggtgtcgat tggccaagac ccaagatagt ttccctgtgg cagctgtgaa      3960
     aatgtttaat acgcttccaa atagtgtaca gtccctgcca atggagctgt tcaaaactaa      4020
     agtgctaagt aacttaaaag aacatccatt gtactcagta gatgaattct tctccagtga      4080
     cagaacagtg attacctgac ttggaacaca gtgttacaat attctgaaca atacagatgt      4140
     ggaaatacta atgttaatgt taattattac tttcagtgta gtgttgttat tgtttaaaat      4200
     gtaatcttga cgcagtccgt ccagttccaa ctggtcaatg acgaagcatt ggtaataaa       4259
//
ID   Daphne-28_LMi repbase;    DNA;    INV; 4928 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 19.12, Created)
DT   17-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4928
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3400-3400 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(516..1529,1651..2205,2175..2357,2339..2965,
FT                 2935..3120,3069..4133)
FT                 /product="Daphne-28_LMi_1p"
FT                 /translation="MPRKFFRPKMFTHGKPHETVLQVPPNNRFSVFEENTN
FT                 TVDSFATVLNNERVSANTSRKIGKKCVKVNIHADSHGRGLAKILCEDXDVD
FT                 AYSYVKPGAPLYEIGKNIKDGSPMNSNEYTVIVGGANDVYKNELSSAIQNL
FT                 NIILESNNSNAMIILGIPHRHDLIYESCVNKEIAKANKQFENICNLYPNTQ
FT                 FLPIDFLQRDSFTRHGLHLSRKGKKLLCFKIAEMVSANTKKGSNSQKTVQT
FT                 SVPQQPTQSPSAQLYNINATTKTPTDDPILPESTNSPPSVDSIEPTSVAAM
FT                 PGLIVDTTVTPASHQEEDIWASRIVPEPMEEASSTPEDSSQLLKIQGFFMV
FT                 SSQGRKNSVIATPPSKPNVNTKREINPINHPKTLVSVNKLTVFHQNIQGLR
FT                 SKLDEISINILDKDCIDSADVICFSEHFMKLDTDSLQLDSYNLAALYCRQS
FT                 LEKGGVVIYVKNKIVHRSLDLSDYCIDQHCEVCGVVISTNLSEITVLSCYK
FT                 APAGKICIFLKQIVSVNSYFLQKQRILLIFFAKTKNIIVLGDFNVDYLIDN
FT                 MGKNDLSHVMSSFNLTAQVDFPTRVTANSISRMTISSPNDNIFLDKSRNPN
FT                 TIVKRVLNGLSDHDGQLLSIEGVGPLSKNKSYSKTFRAINSQSINTFCDLL
FT                 QETDWDQIEHLDNVDDKYNAFLNEFICLFEAAFPKRTAKPKHETYCHKNWL
FT                 TRGIKTSCRRKRNLYASLKSCFSLEKEKHYKLYCSILKKVIRAKSNSIKSE
FT                 IDVSSNKIKTIWGIIKRETGKIPITENSLEIKKMMSFMIMLKKNDVIHDNV
FT                 EIITDIFNSHFLSSAAQTGKTCSINEAMLFLQKSIKKQSKLTCLLSQCMKL
FT                 RLKTKQINMSPVTVHEIEVIIKEMKSKNSVGIDGISSRILKHCYKPVSKIL
FT                 CHIFNKSIQQGIVPERLKYAIVKPLFKKGDKTDVTNYRPISLLTIFSKILE
FT                 KLVHKRFIDHLTQYKLLNSSQFGFQKGISTDQAIFSFTNQILESFNNKLSP
FT                 VGIFCDLSKAFDSVNHEILLEKAKHYGFIGSAGKWIKSYLTGRKQKVMLNN
FT                 SEGHSVSSSWGSIGCGVPQGSVLGPLLFLIFINDLPLCTSLKTHFTLFADD
FT                 TSILINESSNYNLEESANIVLREALNWFVINGLALNANKTQIIHFQPSKKM
FT                 EDPITIKCNGTDLLQAESTKFLGIHIDSNLKWSEHILQLHKKLSSATFAIR
FT                 "
XX
SQ   Sequence 4928 BP; 1706 A; 950 C; 860 G; 1409 T; 3 other;
     gaagatggct gccgatcagt atactcattt tgtgcgcgcc gttgtgaata gtaaaaatcg        60
     cgtgttcaag tgttctctgt gcgagaaata caatgctata tgtgataatt tatgcgtgcc       120
     gtgtcacatc ttaataaaaa acagtggaaa aaatgaacag gtaaatcctc gtgtaggtct       180
     ttgtacaagt cttagtgatc agcgtggtaa acatggacat ctgcatcaaa atgtggacga       240
     aattctgagt gaattagcaa cgaaagaaaa aattatcaac atcctgtgtg acgacatagc       300
     aaagttgcga caggaatatc atattttcaa tcaacaaaca gtgtgaatac atcgccaaat       360
     ataaattgtg ctgagtttat taggcctaaa aagttcacga gtggtaaact acacgaaacg       420
     gtcgcgcaag tgccttcaaa taaccgtttc agtgtccttg aagakaacac tgatactgtt       480
     gatttgtatt gaaaaacaaa agtttgtcta caaatatgcc aagaaagttt tttaggccta       540
     aaatgttcac tcatggaaaa ccacacgaaa ctgtcttaca agtgccacca aataaccgtt       600
     tcagtgtctt tgaagagaat acaaatactg ttgattcatt tgctactgta ctgaataacg       660
     aaagggtgtc tgcaaatacg tcaagaaaga tagggaagaa gtgcgttaaa gtaaacatac       720
     acgcggatag tcatggccgt gggttagcta aaatactatg tgaagatmat gatgttgatg       780
     cttacagtta cgtgaaacca ggagcaccct tgtacgaaat cggaaaaaac ataaaagacg       840
     gatctccaat gaattcaaat gaatacacag taattgtggg tggagccaac gatgtttata       900
     aaaatgaact atcgagtgct atccaaaact tgaacattat acttgagtct aataacagta       960
     atgcaatgat cattttggga attccacaca gacatgacct tatatatgaa tcgtgcgtaa      1020
     ataaagaaat agccaaggct aataaacagt tcgaaaatat atgcaatcta tatccaaaca      1080
     ctcagttttt gccgatcgac ttcctgcaga gagacagttt cacaagacat gggttgcact      1140
     taagtagaaa gggcaagaaa cttctctgct tcaaaattgc tgaaatggtg tctgcaaata      1200
     ccaaaaaagg aagtaactcg caaaaaacag ttcaaacatc agtaccccag caacccacac      1260
     agtctccttc agctcaacta tataacatta atgcaacaac taagacaccc acagacgacc      1320
     caatattacc agaatcaaca aattcaccac catcagtgga ttcaatagag ccaacttccg      1380
     tggcagcaat gccaggatta attgttgata caacagtaac cccagcatca catcaggaag      1440
     aagatatatg ggcttcaaga atagttccag agccaatgga ggaagcatct tcaactcctg      1500
     aagattcatc tcaactcctg aagattcagt gacagtcaag acagcaccac cggagcagcc      1560
     aacagccaag aatcctccac cacccctaag agaagcgcca cttgcaggga ggaggagcca      1620
     gaggtccaaa aaaamcgcag cacgcagtga ggatttttta tggtttcatc ccaaggaagg      1680
     aaaaatagtg tcatagctac acctccaagt aagcctaatg ttaataccaa aagagagatc      1740
     aacccaatta accaccccaa aactctagtc agtgttaata aattaactgt ttttcatcag      1800
     aacattcaag gtttaagaag taaactagat gagatatcaa ttaacatttt agataaggac      1860
     tgtattgata gtgctgatgt aatctgtttt agtgaacact ttatgaaact agacactgac      1920
     tcacttcaac tggatagcta taacctagca gctctttact gtaggcagtc tttagagaaa      1980
     ggtggagtgg tgatttatgt gaagaacaaa atagttcata gatctttaga cttgagtgac      2040
     tactgtattg atcaacattg tgaggtctgt ggagtcgtaa tcagtactaa cctttctgaa      2100
     attactgtcc tgtcttgtta taaggcccct gcaggcaaaa tttgtatatt tttaaaacag      2160
     atagtctctg ttaactcata ttttttgcaa aaacaaagaa tattatagtc ttaggtgatt      2220
     tcaatgttga ttatcttatt gataacatgg ggaaaaatga cttgtcacat gtaatgagct      2280
     cttttaatct aacagcacag gtagattttc ccactagagt cacagcaaat tccattagcc      2340
     gaatgacaat atcttcttag ataaaagcag aaatccaaac acaattgtaa aacgtgtttt      2400
     aaatgggctc tcagaccatg atggtcagct actttcaatt gaaggtgttg gcccccttag      2460
     taagaacaaa tcctacagta aaaccttcag agcaattaac tcacagtcta tcaacacctt      2520
     ctgtgatcta ttacaagaaa ctgattggga ccagatcgag catctagaca atgtcgatga      2580
     caagtacaat gcattcttaa atgaatttat ctgcctattt gaagcggcct ttcctaaaag      2640
     gactgccaaa cccaaacacg agacctattg tcataaaaac tggttaactc ggggcatcaa      2700
     aacttcctgc agaaggaaaa ggaatctgta tgcttcactt aaatcttgtt ttagtctaga      2760
     aaaggaaaaa cactacaaac tgtactgctc tatccttaaa aaagttataa gggcaaagag      2820
     taattctata aaatcagaga ttgatgtctc tagtaataaa atcaaaacca tatggggcat      2880
     aataaaaagg gaaacaggta aaatccctat cacagaaaat tctttagaaa ttaaaaaaat      2940
     gatgtcattc atgataatgt tgaaataatt actgacattt ttaacagcca cttcttgtca      3000
     tcagcagccc aaactggaaa aacatgttct attaatgaag ccatgttgtt tcttcaaaaa      3060
     tctattaaaa aacaaagcaa attaacatgt ctcctgtcac agtgcatgaa attgaggtta      3120
     taatcaaaga gatgaaaagc aagaattccg ttggcattga tggtatttct tcaagaatac      3180
     tgaagcactg ctataagcca gtaagcaaaa tattgtgtca tatatttaat aaatccatcc      3240
     aacaaggaat tgttccagag agattaaagt atgcaatcgt caaacctctc ttcaaaaaag      3300
     gagataaaac cgatgttacc aactatcggc ctatctccct tctaacaatc ttctccaaaa      3360
     tacttgagaa gctggtgcac aaaagattta ttgaccacct cacacaatat aagttgctaa      3420
     atagtagcca gtttggattc caaaagggca tatcaacaga tcaagctatc ttttccttta      3480
     ccaaccaaat cttagagtcc tttaacaata aattatcccc tgtaggcatc ttctgtgacc      3540
     tttctaaagc gttcgatagt gttaaccatg aaatcctctt agaaaaggcc aaacattatg      3600
     gtttcatagg atcagccggc aaatggatta aatcatacct taccggaaga aagcagaagg      3660
     tcatgttgaa caactctgaa gggcactcag tgtcatctag ctggggctcc attggctgtg      3720
     gtgtccctca gggatctgta ctcggccctc ttctcttcct catcttcatc aatgaccttc      3780
     ccctatgtac aagcttaaaa actcatttca cacttttcgc tgatgacacc tccattctca      3840
     tcaatgaatc ttccaattac aatcttgagg aatcggccaa tatcgtctta agagaagcac      3900
     ttaattggtt tgtaattaat gggcttgcac taaatgctaa caagacccag attattcatt      3960
     ttcaaccaag taaaaaaatg gaggatccaa ttactatcaa atgtaatggt accgatttac      4020
     tacaagctga gtcaacaaag ttcctaggta tacacattga cagtaatcta aaatggtccg      4080
     aacatatctt acaacttcac aagaagctca gctcagcaac atttgctatt cggtaatttc      4140
     cactgtctgt gaccgagaca ccactaaaac tgcctatttt agttactttc atgcataatg      4200
     ttgtatggca tagttttctg gggaatcagc cactttccaa aaaaaatatt cattgcacaa      4260
     aagagagcga tcaggataat gagcggagtc caacctagac attctgtaga aaccttttta      4320
     gaaaattggg gatctgacaa ctgcatgtca atatatctac tccctactgt gctttattgt      4380
     caaaaatgtg cacttgtaca aaactaatga tgttaccata ctcacaatac caggaggaag      4440
     ctagatctcc attatgaatt aaaaaaccta atactgtaca aaaaggagtc cactatatga      4500
     gctgcaaagt gttcaatgct cttccactat cctgaaatca cttgtccatg agcctcccaa      4560
     atttaaacaa cagctcaaac aatatctata gataagtcct tttattcagt tgaagaatat      4620
     ttcaatttgt gttaacaatt tattttttaa tttacaagat gttatttttg gtagcatgta      4680
     ttgtaatttt gtcaatatac tattcttgct gtgagatcta ccttttttat gtaattttat      4740
     tcttttaatt ttttgtgtaa tgtaattttt gtaattttaa tgtgtaattt ttgtctatac      4800
     ctttaatgtg taatttgtct attgcaagag ggattctgta tgttcctttt gtaacaattt      4860
     gacacgtcct acatccagtg aatgtctcgc tgtattggat ccatgggatt aaataaataa      4920
     ataaataa                                                               4928
//
ID   Daphne-29_LMi repbase;    DNA;    INV; 3631 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3631
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3401-3401 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(322..531,510..707,697..825,829..1176,
FT                 1146..1292,1271..1585,1561..3465)
FT                 /product="Daphne-29_LMi_1p"
FT                 /translation="MSQSPVASSVAVVGNKAAVTVPLREDSPVASSVAAVG
FT                 NKAAVPVTVPPQXASTATASTAPPNEEAAEKKKRSSREEEVVSSVAGRRKM
FT                 VPPLRLKDFLVEGSKMKNLEISDLKHPIAPHQNVHSKGNSSSELKFATNLL
FT                 PEHQGIKDKEFFVNDFGLDNNFDIFCFSEHWATENELTLVLDTYNIANSYC
FT                 RKLHLRGGVAIYTNQSLSYSFTKLDLDYLCEEQNFEAAGIFIVSLKLVIIS
FT                 LYRSPKGIISVFLEKLEMLLNVFRESKWLHYDIVIGGDLNADFDVTTNKGV
FT                 SLNCNDKQRSVTELKNLLRQHNLHSINSRPTRDKACLDNIFVNFKTAEDSC
FT                 MNCRRLMYVTVFPFSDHDAVSVNYISRFHPDKCDIPVPKVVITRPITDDKI
FT                 SRFRMALADREWFDQCYGDTHCSLSSDLSAKVVFDRFFKTFLTLFNDSIPL
FT                 KNAKQHSPKKCKVIDKGFKTKVTNRQNPWYTEQLTNLKHQLMVLYNISNAL
FT                 KTEHARSAYVKCRNEYKKAIVEAKKAHNFRSIENSTNKCQAAWKLINSVAK
FT                 DPRNKSVNVSPQKFNDYFIKSVEEVGNAIIKPDIRSSELLSKNVSRSTTNI
FT                 NVFTFSEVSPSLILKIVKQLKSSDSADIYDISCNMLKRVIDCIVYPLTFCI
FT                 NKCISEGYFPDELKVSRVVPVYKKGDTESPSSYRPISIVPAFSKVLECVIY
FT                 QQLSVYFENLGLISESQYGFRKNLSTVDAIDSVVKYLHQVFEDKGFAQVTF
FT                 CDLSKAFDCVEHTPLLDKLEFYGIRDISLKLLKSYLQNRRQVVCIGKEMSS
FT                 TEQVKVGVPQGSVLGPFLFLIMINDLPSFIKSSTVLYADDTTFLHSSNDXS
FT                 SLKTCVAKTLDQASYWFKANGFLLNETKTQQMVFTLKDKLPSDDPSYVKFL
FT                 GVYLDDKLSWGQHVKYISGKLSRVIYLLRRLMDYVPEKYVRITYFSFFQSI
FT                 ITYGIILWGNSSCVQDILILQKKAIRVITGSPHKEHCKPLFCKLKVMTVIN
FT                 LYIYYVLIYTKRKLPETKLRENVHYYNTRRNKCIFTSYHRLSKSLNSYELV
FT                 GINYLISCHNMYKIYPNKHLNKRCMTG"
XX
SQ   Sequence 3631 BP; 1278 A; 641 C; 673 G; 1034 T; 5 other;
     gaaaccgttg caacaaatcg aaaatttagg acgatttgta gcagttttgt aaacacacat        60
     tcattgaagc aaccagttct gccaggagca ctttaccgga catggactgc acagaaacca       120
     cctgggcaag gatgtgttgg ccaaagaaat tctccatgtg ataaaagctg caggaatgaa       180
     cagtcacgta aaaattgcac tgcctgcaat atgttcattg ccaattacaa amgaaaagaa       240
     gacggtacca acagcatatg aagaagaaac acctatggct wcatctaata agtagaaagt       300
     acatcagcac cagcacatga aatgtcacag tcaccagtgg catcatcagt agcagtagtg       360
     ggaaataagg cagctgtaac agtaccacta agagaagatt caccagtggc atcatcagta       420
     gcagcagtgg gaaataaggc agctgtacca gtaacagtac caccacaasa agcctcaaca       480
     gcaacagcaa gtacagctcc accaaatgaa gaagcagcag agaagaagaa gtagtgtcaa       540
     gtgttgcagg taggaggaag atggtgcctc ctctccgtct aaaagatttt ttagtggaag       600
     gcagcaagat gaagaacctg gagataagtg atctaaaaca tcctatagcc cctcaccaaa       660
     atgttcactc taaaggaaac agcagttctg aattaaaatt tgctacctga acatcaaggt       720
     ataaaagata aagaattctt tgtaaatgat tttggattag ataataattt tgatattttt       780
     tgttttagtg aacattgggc tactgagaat gaacttacac tagtttaact tgatacctat       840
     aacatagcaa acagttactg tagaaaattg catttaagag gtggtgtggc aatatacact       900
     aaccagtcac tcagctactc ctttactaaa ttggatctag attatttatg tgaagaacaa       960
     aactttgaag ctgctggtat atttattgtt agtcttaagt tggtaataat atcattatac      1020
     agatcaccta aaggtatcat cagtgtattt ctggaaaaat tggagatgct gttaaatgtg      1080
     tttagagaga gcaaatggtt gcactatgac attgtaatag gtggtgatct gaatgcagat      1140
     tttgatgtaa cgacaaacaa aggagtgtca ctgaactaaa aaatcttcta aggcagcaca      1200
     acttacattc aatcaacagt aggccaacaa gggataaagc atgtctagac aatatttttg      1260
     tcaactttaa aactgcagaa gactcatgta tgtgacagta tttccattct cagatcatga      1320
     tgcagtatct gtaaactaca taagtaggtt ccatcctgat aagtgtgata ttcctgtccc      1380
     aaaagttgta atcaccagac ccatcacaga tgataaaatt tccaggttcc gtatggccct      1440
     tgctgacaga gaatggtttg accaatgtta tggtgacaca cattgtagtt taagtagtga      1500
     tttgtcagca aaggtagtgt ttgataggtt tttcaaaaca tttttgacac tctttaatga      1560
     cagcattccc ctaaaaaatg caaagtaatt gacaaaggat tcaaaaccaa ggttacaaac      1620
     agacaaaatc catggtatac tgagcaactg accaatctga aacaccagct tatggtgctg      1680
     tacaatataa gtaatgcact gaagactgag catgcgagat cagcgtatgt taaatgtagg      1740
     aatgaatata aaaaagccat tgtggaagcc aaaaaggcac acaatttcag aagtatcgag      1800
     aattccacca ataagtgcca agccgcatgg aaattaataa acagtgtcgc taaagaccca      1860
     agaaacaaat cagtaaatgt aagtccccaa aaattcaatg attattttat taaatcagtg      1920
     gaagaagtag gaaatgccat tatcaaacct gatatcaggt catcagagtt actttcaaaa      1980
     aatgttagta gatcaacgac aaatataaat gtgtttactt tctccgaagt ctcccctagt      2040
     cttatwctaa aaatagtaaa gcagttgaaa tcatcagaca gtgcagatat atatgacata      2100
     tcttgcaaca tgctaaaaag agtaatagac tgcattgtgt accccttaac gttttgcata      2160
     aacaagtgta tatctgaggg atattttccg gatgaactta aagtgtctag ggtagtccca      2220
     gtatataaaa aaggagatac ggagtcaccc tcaagctaca ggccaatcag catagttcca      2280
     gccttttcta aagtactgga atgtgtcatt tatcaacagt tatctgttta ctttgaaaat      2340
     ctaggattaa tcagtgaatc tcaatatggc tttaggaaaa acttgtctac tgttgatgct      2400
     attgactctg ttgtcaaata cctacatcaa gtgtttgagg ataaaggctt tgcccaagtc      2460
     accttttgtg atctaagcaa agcttttgat tgtgttgaac atacaccact tctagacaaa      2520
     ctggaattct atggcattag agatattagc cttaaactat taaaatcgta tctacagaat      2580
     cgtaggcaag ttgtttgcat aggcaaagaa atgtccagta cagaacaagt caaggtaggt      2640
     gtcccacagg gatctgtact gggccctttc ctgttcctga taatgattaa tgatctgcca      2700
     tcatttatta aatccagtac agttctatat gcagatgata caacatttct ccatagtagc      2760
     aatgatktca gtagtcttaa aacttgtgtc gcaaagacac ttgatcaagc atcctattgg      2820
     tttaaagcaa atgggttctt attgaatgaa accaaaacac agcaaatggt ttttactcta      2880
     aaagacaagc ttccatcgga tgatccaagt tatgttaagt ttttgggggt atatctagat      2940
     gataaattat cttggggtca acatgtgaaa tatattagtg gtaagttgtc aagagtaatt      3000
     tatttgttaa ggcgacttat ggattatgta cctgaaaaat atgtcagaat aacatatttc      3060
     tcattcttcc aaagtattat aacatatggt attattttat ggggtaactc tagctgtgtc      3120
     caggacatct taatactaca gaagaaagcc attagggtaa ttactggatc tccacataag      3180
     gaacactgta aacccctgtt ctgtaaacta aaggtcatga ctgtcataaa cttatacata      3240
     tactatgttt taatttatac aaagaggaaa ctaccagaaa caaaactccg ggaaaacgta      3300
     cattattaca acactagaag gaataaatgc atctttactt cataccacag attgtcaaaa      3360
     tcgctcaaca gctacgaact cgtgggcata aactatttaa taagctgcca caacatgtac      3420
     aagatttacc cgaacaagca tttaaacaaa cgctgcatga ctggttagtt gcccacccat      3480
     tctacaattt agaagaattt ctcaactgta atataatatt gtaatattac tgacaagctg      3540
     ttatctcttt taaattaaca atttatgtta tctatgtgac gttgtctatt gctgtaatgg      3600
     cctaatgaca ataaaattaa ttattattat t                                     3631
//
ID   Daphne-2_BTa repbase;    DNA;    INV; 4939 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4939
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 621-621 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           266..1699
FT                 /product="Daphne-2_BTa_1p"
FT                 /translation="MSIENKLSPRVTRASVLRQDTINKLRDKHQTNKKSPN
FT                 PDILKGVRNLARPPTDKAGVSRASNNKRCHLTVHNDMLPNQRKKASKRAVG
FT                 IASSSLPNKKQCSTAQGSTSPSRSPPSPSDLQKGIQTDVSFWDLTPTSGTT
FT                 ISSTSPLSDSPQIKDTDHERFLHRQVGVQTDASLDLTTQRDALICELVETT
FT                 GKYNAAKLEITNISIINRSLEEKARFLSEELQKAKEELLYLQKAKNYMLTK
FT                 LRRKNSDKKDICDFSLRNTCIFKKFRGIGEQISYNLGKPEIGEGTIVRNYK
FT                 EVTTVRKRKILILADSHGRKVSEILKSKLGNNGEFEICSIIKPDAPLKHVT
FT                 THIKGLSKNFSKQDIILVLAGSNDIPPHPHVGRMTDYVLSRELHRLAMDTL
FT                 HTNLFIPKLFHRYDLPGSITVNFKRYFDSQIEHVAGKFSHITVFDVDIFKR
FT                 DMFTAHGFHLSYSGKNELLNIFLKKVSSSLNLF"
FT   CDS           1651..4710
FT                 /product="Daphne-2_BTa_2p"
FT                 /translation="TIEYFSKKSKFLFKLILNDAAGLAECEEKNENENVIF
FT                 ENLNRKINFSNTNDIGQIFSLLNFNIRSIQGTVKSHLLHLEISKLQKLPDI
FT                 ICITEHWFKNLAPIPIKDYVCANFYSRDKKRGGGSSIYLRNSPGAPVILFS
FT                 PCEELTKLAIESAFEISAVIIKKIDQWVPSAPFLIINIYSTPSCDTELFFH
FT                 KLEELLSIIVKKKAHFLICGDFNINLLDKNCKESSYFLNMLSCHNLEPVFK
FT                 NTPSRISKDSKTLIDNCISNFPISNAITFDPGLSDHRAQVISIEKKVIAVK
FT                 SEKNRGYRSWTIVNKFNLRSLLIYCMSILMLCKDNVSLEFNKFNSLLYNAM
FT                 ETCCPIKPNMKDKRSRTFKYNDEILALSEKKKHLYEKYKNTGSKKFKKAWN
FT                 VANKQCKKLLYTLKRNSNDLKLKNSKNKSKTVWNIIKEETERFQSPLIDIV
FT                 ESDGQIFTDPYDIANSFNKFFTGLASKFNANADIPAAMNLLRDTIPISTSL
FT                 EFSFKPISLETLSTVIKDLKTNNQDTFGNIPTKLLIENFDVIGDPLLKLVN
FT                 LCITEGVFPEFMKKGTVTPLFKKGNRKLVTNYRPITIIPTLAKVLEKILYN
FT                 QLYSYFETNQLFDDHQFGFRKKKCTTQAIQKLVDNIYSAFENKSPIASIHF
FT                 DLSKAFDTVDHSLLLYKLQHYGLNESSIMLIRSYLSNRFQSVKIETVDGPV
FT                 FSETLNVNLGVPQGSCLGPLLFIIFINDLPGFLDALTFLFADDTSTTVRGE
FT                 DVLTQLKTTYNQAHNWFKANGLSLNEDKTQLISYVPSKRVKQPTDLTYGNT
FT                 FEIDDNTQLNFLESTNFLGVFLDQYLTWESHIDNIIRKLQKSKWAIRNLVK
FT                 VASLSSALLYYHANVMSHIRYGIAVWGRSSFTKRVSKEHLKIIRIIYNKPY
FT                 GSDCKEIMSSERLFTVTSLYIYECIKYAVEGEIIKPADLFPTHNYNSRHFF
FT                 IPNNSTKYKISENSVKFASIQLFNALPLNIRLHFKNSEISKFFSHLKSFLL
FT                 AESFQDLSEFFTTA"
XX
SQ   Sequence 4939 BP; 1695 A; 1010 C; 785 G; 1449 T; 0 other;
     acactggaac caacgcgtgc gcgttgtgct cccgcttcgc gaaatgtttt cctgagttaa        60
     tttgataagt taaatgtaaa attgctaccc aagtgtgcgt tgtgaaattc tgcatctttt       120
     agtactaaaa ttgtgactgt gtgtggtgat tgtgctgtga atctgggaaa ttcttaattg       180
     cacatcactg ctggtcctcc gaaagaattt aaaaaatttc aatcattctc atcctagctt       240
     gtaaacaatc aagaacaacg ctgccatgtc aattgaaaat aagctatcac ctcgtgtcac       300
     acgagccagt gttttgaggc aggacactat caacaaatta cgggataaac accagaccaa       360
     caagaaatct cccaaccctg acattctgaa aggcgtccga aatctcgccc gtccaccgac       420
     tgataaagct ggtgtatctc gagctagtaa caacaagaga tgtcatctca ctgtgcacaa       480
     cgacatgttg ccaaatcaac ggaagaaagc gtcaaaaagg gccgtcggga ttgcatcatc       540
     ttccctcccc aacaagaaac aatgttccac tgcacaaggg tcaacatctc cgtctcggtc       600
     ccccccgtct ccatctgact tgcaaaaggg aatccagact gatgtttctt tttgggacct       660
     taccccaact tccggtacca caatatcatc aacatcacca ttgtcggact cccctcagat       720
     taaagacact gatcacgaaa ggttcctaca tcggcaggtg ggtgtccaaa ctgatgctag       780
     tctagatcta accactcaaa gagacgcttt aatctgtgag cttgttgaga cgacaggaaa       840
     atacaatgca gcaaagttag agataactaa tatttctatt attaacagat ctcttgaaga       900
     aaaagcaaga tttctcagtg aggagctaca gaaagccaag gaagaacttc tctacctcca       960
     aaaagctaaa aattacatgc ttactaaatt aaggagaaaa aattcagata aaaaagatat      1020
     ctgtgacttt agtctcagaa atacttgtat ttttaaaaaa tttagaggca taggtgaaca      1080
     gatctcctat aatctgggta aaccagagat cggagaaggt actattgtaa ggaattataa      1140
     agaagttact accgtaagaa aacgtaaaat cttaatctta gcagactctc atggccgcaa      1200
     ggtctcagaa atattgaaaa gtaaattagg caataatgga gaatttgaga tatgttccat      1260
     cataaaacct gatgcacctc ttaagcatgt aactacgcac atcaaaggct tgtcaaaaaa      1320
     tttttccaaa caagatatta tattagtttt agcaggctct aatgatattc cccctcatcc      1380
     tcatgtcggg agaatgacag actatgtatt atcaagagaa ttgcaccgac ttgccatgga      1440
     tacattgcac actaatctgt ttatcccaaa gcttttccac agatacgatt taccaggctc      1500
     gataactgtt aattttaaaa ggtactttga ctcacaaatt gagcacgtgg ctggtaaatt      1560
     ttcacatatt acggtatttg acgtagacat ctttaaaaga gatatgttca ctgctcacgg      1620
     ttttcatcta agttactcag gcaaaaatga actattgaat atttttctaa aaaaagtaag      1680
     ttcctcttta aacttatttt aaatgacgca gcaggtctcg ctgaatgtga agaaaaaaac      1740
     gaaaacgaaa atgtaatttt tgaaaattta aatcgcaaaa tcaattttag caacactaat      1800
     gatatcggtc aaatattctc actgttaaac ttcaatatta gaagtattca aggcactgta      1860
     aaatcccacc tgctgcactt ggaaatctct aagctgcaga aacttcctga cataatctgt      1920
     atcaccgaac actggtttaa aaacttggcc ccaataccta ttaaagacta tgtttgcgca      1980
     aacttctatt ccagagataa aaagaggggg ggaggctcct caatctattt aagaaacagc      2040
     cccggagcac cagttattct gttctcaccc tgtgaagaat tgactaaact cgcaatagag      2100
     tcagcttttg aaatcagtgc agttattata aagaaaatcg accaatgggt cccaagtgcc      2160
     cctttcctta taatcaatat ttacagcacg ccctcttgtg acactgaact attctttcat      2220
     aagcttgaag aactgctttc tataatcgtt aaaaagaaag ctcatttttt aatatgtggt      2280
     gacttcaata ttaacttatt ggataaaaat tgcaaagaat cttcctattt tcttaacatg      2340
     ctttcttgtc acaatcttga gcctgtattc aaaaatactc catctcggat ctccaaagac      2400
     tctaaaacct taattgacaa ttgcataagt aactttccaa tttctaacgc gataactttt      2460
     gatcctggtc tttcagacca tagggcgcaa gtaatatcga tcgaaaagaa agtaattgca      2520
     gtaaaatctg aaaaaaatag gggctaccgc tcctggacaa ttgtaaataa attcaatctc      2580
     agaagtctcc taatttactg tatgtcaatt ctaatgttat gtaaagataa tgtatcactt      2640
     gaatttaata agtttaactc acttctgtac aatgcaatgg agacctgttg tccaatcaaa      2700
     cccaatatga aggataaaag atcacgaact ttcaaatata atgatgaaat tttagcttta      2760
     agtgagaaga aaaaacatct ctatgagaaa tacaagaaca ctggctctaa aaagttcaaa      2820
     aaagcttgga acgtagcaaa taaacaatgt aaaaagttat tgtacacttt gaagagaaat      2880
     tctaatgatc ttaaattaaa gaactccaaa aacaaaagca agacagtttg gaacatcatt      2940
     aaagaggaaa cagagaggtt tcaatctccc ttaattgaca ttgttgagtc cgatggtcag      3000
     atattcactg atccctacga catagcaaac tctttcaata aatttttcac tggtcttgcc      3060
     tcaaaattta atgctaatgc tgacattcct gcagccatga acttattgcg agacaccatc      3120
     cctataagta catcattaga attttccttc aaaccaatta gtttggaaac tctttccact      3180
     gttattaagg atcttaaaac aaacaatcaa gataccttcg gaaacattcc caccaaacta      3240
     ctgattgaga actttgatgt aataggagac cctctcttga aacttgtaaa cctctgcatt      3300
     acagaaggtg tctttcctga attcatgaaa aagggaactg tcacccctct ctttaaaaag      3360
     ggtaatcgta agcttgtaac caactatcgt ccaattacta taattccaac cttagctaaa      3420
     gttctagaaa aaatccttta taatcagctt tacagctact ttgaaaccaa tcagctgttt      3480
     gacgaccacc aatttggctt tcgcaaaaaa aaatgcacca ctcaggctat tcaaaaatta      3540
     gtggacaaca tttattcggc ctttgaaaat aaatccccta tagcaagcat ccacttcgat      3600
     ctatctaaag catttgatac agtagaccat agcctccttt tatacaaact tcaacactac      3660
     ggcctaaacg aatcttcaat aatgcttata cgatcatact tatccaacag gtttcaatcg      3720
     gtcaaaatag agactgtgga tggccctgtc ttctctgaga cattaaatgt caatttagga      3780
     gttccccaag gatcatgtct cggacccctg ctctttataa tttttatcaa cgatctccca      3840
     ggttttctag atgccctcac tttcttattc gcagatgata cctctacaac agtcagaggg      3900
     gaagatgtac ttactcagtt aaaaacaact tataaccaag cacacaattg gttcaaagcg      3960
     aatggcttgt ccttgaatga agataagact caattaattt cttatgttcc gtctaaaaga      4020
     gtcaaacaac ctactgatct tacttatgga aatacatttg aaatcgacga taacacccaa      4080
     cttaattttc ttgaatccac aaatttctta ggagtatttt tagatcagta ccttacatgg      4140
     gaatcccaca ttgataatat aattagaaaa ctccaaaaga gcaaatgggc aataagaaat      4200
     cttgtgaaag ttgcctctct cagttctgct ctcctatatt accatgctaa tgtaatgtct      4260
     cacatccgct atggaatcgc tgtatggggc aggagtagct ttacaaaacg tgtttccaaa      4320
     gaacacctca agatcattag aattatatac aacaaaccat atggaagtga ctgtaaagaa      4380
     ataatgtcat cagagagact gtttacagtg acctctttat acatctatga atgtattaaa      4440
     tatgcagtag aaggagaaat aataaagccg gctgatctat ttcccacaca caactacaac      4500
     agcagacact tcttcatccc caacaattcc accaagtaca aaatttctga aaacagtgtt      4560
     aagtttgctt ctattcagct gttcaatgct ctccctctaa atattagact tcactttaag      4620
     aactcagaga tcagcaaatt tttttcacat ttgaaatcgt ttcttttggc tgaatccttt      4680
     caagatctct ctgagttttt caccactgct taacttccta acttaatgtt ctagtattga      4740
     taactcacgg tattcactct ctctgttttc caacttgctg ttattgcagg ttataaattt      4800
     attataagat aaatttgttt taacgtcttt tttgtaacta aataccatgt tgactagtac      4860
     aatagcccca tatggtggct ttatgtatgt tatgtaaaaa ataaaaataa aaaataaaaa      4920
     ataaaaaata aaaataaaa                                                   4939
//
ID   Daphne-2_Hmel repbase;    DNA;    INV; 3696 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a non-LTR retrotransposon from Heliconius melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3696
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           604..3477
FT                 /product="Daphne-2_Hmel_1p"
FT                 /translation="CKFQFKLDNKTTPRSFKFNIVHQNMQGLGGKELELEL
FT                 FLKKFNIHIMCITEHWISRCNNTVNIENYTLSSSFVREKAIRGGSLILVRN
FT                 DIRCKSRPDIVALSDERSIELSCVEFNRHIIVCVYRPPSGSFEVFEEKMED
FT                 VLNNLSSNSKSLIVCGDFNIDIIQVTSLSLRLLNLFKSFNLFNIFSEPTRI
FT                 TNTSATCIDNVFCHCETVEKQIITNLSSDHCGQMFSVIDKTVAERKQISIR
FT                 PITENKINLFNNKVSEKIANLEITGLNPNQLYCKVFNLLTTEFDNIFKVKQ
FT                 IYKNSKLTFSDWATVGIYRSRNKLYELYNMRQWNQDPAFLLKVRNFSKIFK
FT                 KVCVQAKSMHIRAKILNSNNKIKATWDAITTVTGRXRAVSEPIKLKVNNII
FT                 LNSDLEVANTFQXFFSDISTEVTRSLPSSPSEAELILKTHVNSCRQNFVFK
FT                 NVSPDEIVKTFKSLNLKKTGDLWGMSVKVFNSIIPNIAPYLALIFNNCVES
FT                 GTFPDLMKYSKIVPLYKSGDRSEPGNYRPISVLPSLSKIFEKIMFNQLTIF
FT                 LNINNCFHSEQYGFTKGKSTTDAGAALLKHIYDAWEXSQNAIGVFCXLSKA
FT                 FDCVDHVTLLLKLKHYGIQDTALDLIASYLNQRIQKVSINNVKSSGSPLKM
FT                 GVPQGSXLGPLLFLLYINDLPFYVKNLCDIVLFADDTSLIFKVDRNKINYD
FT                 EVNSALSHILRWFDVNNLMLNAKKTKCIEFALPNVKKHNFNLIIKGEPLNV
FT                 SESAIFLGVTIDSKLQWNAHLEALADKLSSAAFAIKKVRQMTDVETARLVY
FT                 YSYFHSILSYGMLLWGSASDINSIFILQKRAVRYIYNLRARDSLRDVFKDA
FT                 GIITVASQFIYYNILFVRQNIHCHXKXSDSHTIETRNKDKLVTPSFRLQKV
FT                 NKSFMGLSIRVYNKIPQCILSLPLPKFKISVKKILTSKAYYTVQEYLEDKH
FT                 VWN"
XX
SQ   Sequence 3696 BP; 1299 A; 575 C; 595 G; 1208 T; 19 other;
     aagaaaaaaa atttacatat tgtcaattcc tcccgctcct catcaagaaa tatttttgtt        60
     atatctgata aattaggtca aggctttggg tccctactta gtcaccattt ctcaaattca       120
     gtatttaatg catgttcgcc tggagccagt yaccagttta ayattaagaa aattatgtcc       180
     atgaatbtaa atgagcatag tactgttgta ctattacatg gtcatagttt gtcagtgagg       240
     aaacaagata ttataaagag tatagaaaac ttgcttgact tacatagtaa aactaaatgt       300
     aaatttatta tatgctcttt tccatattct tcttccctca cagaaaaaca aaataaatac       360
     atatacaacc tgaacttgac attatataat acgacagaac gtcatagcga cgcattattt       420
     tatttagatt taaataaatt tatttttaat agctgtaagt tgacagaaga tacattgtat       480
     cctacctcta tattttaaga aacaaattgc tactttagta gcatataata tacaaaaccc       540
     cgttgtacat ggtataacga aggaaattaa atgtactaat aatahttcta taaagaataa       600
     tgatgtaagt tccaatttaa actagacaat aagacaacgc ctaggtcatt taaatttaac       660
     attgtacatc agaatatgca aggcctagga ggcaaagaac tggaactaga attatttcta       720
     aaaaaattta atatacatat aatgtgtata actgagcact ggatctcgag atgtaacaat       780
     acagtaaata tagaaaacta tacattgtca agttcgttcg ttagagagaa ggccatccgc       840
     ggcggttcgc ttatattagt gagaaatgac atacgttgta aatcgcgacc agatatagta       900
     gctctctccg acgaacgctc cattgaattg tcctgcgttg aattcaatag acatattata       960
     gtatgcgtgt atcgaccccc ctcaggtagt tttgaagtat ttgaagaaaa aatggaggat      1020
     gttctgaata atttgagttc gaatagtaaa tctttaatcg tatgcggaga ctttaatata      1080
     gatataatac aggtgacatc attaagcctt cgtcttctaa acttatttaa atcttttaat      1140
     ttgtttaata ttttctctga accaactcgt ataacgaata cgtccgctac ttgtatagat      1200
     aatgtttttt gtcattgtga gactgtagaa aaacaaatta ttactaatct tagctcggat      1260
     cattgtggtc aaatgttttc ggtaatagat aaaacagtcg cagaacgtaa acaaatatca      1320
     attagaccaa ttactgaaaa taaaattaat ctttttaata ataaagtgag tgaaaaaatt      1380
     gcaaacttag aaataaccgg attaaatccg aatcagctat attgtaaagt ttttaattta      1440
     ctcactacag agtttgataa catttttaaa gttaaacaaa tatataaaaa ctcgaagtta      1500
     acttttagcg actgggcaac tgttggtata taccgaagca gaaacaaact ataygaatta      1560
     tataatatga ggcaatggaa tcaagatccg gcgttcttgt taaaagttag aaatttttca      1620
     aaaatattta aaaaggtatg tgtccaggct aagtctatgc atataagagc aaaaattttg      1680
     aactctaata ataaaattaa agctacatgg gatgctatya ctactgtaac tgggagatyt      1740
     agagctgtca gtgaacctat taaattaaaa gttaataata taatcttaaa ttcagattta      1800
     gaagtggcaa atacttttca aaawtttttt tctgatatat ctactgaagt aacacgttca      1860
     ctgccatcat ctccttcgga agcagaatta atactaaaaa cccatgtaaa tagttgtaga      1920
     caaaattttg tgtttaagaa tgtgtcacca gatgaaattg tcaaaacttt taaaagcctt      1980
     aatttaaaga aaactggtga cttatggggc atgtctgtta aagtttttaa ttcaattata      2040
     cctaatattg ctccttacct ngctttaatt tttaacaatt gtgtagaatc cggtactttt      2100
     cctgatttaa tgaaatatag caaaatagtg ccgctttaca aaagtggaga tagatctgag      2160
     cctggaaatt acagaccgat ttctgttttg ccatccttaa gtaaaatatt tgaaaaaata      2220
     atgttcaacc agctcacaat tttcttaaat attaacaatt gtttccatag tgagcaatat      2280
     ggtttcacca aaggcaagtc cactacggat gcgggtgctg cactcctaaa gcacatttat      2340
     gacgcatggg agadgtcaca aaatgcaatt ggagtgtttt gtgahttatc caaagccttt      2400
     gattgcgtag accatgtaac tctgttatta aaactaaaac attatggtat acaggatact      2460
     gcccttgacc ttattgcctc atatctaaac caaagaatcc agaaggttag tataaataat      2520
     gtaaaatcat ctggatctcc tctaaagatg ggcgttccac aaggatctat dcttggtccy      2580
     cttttatttc ttctttatat taacgatctg cctttttatg tgaagaacct atgtgatatt      2640
     gtacttttcg cggatgatac ctctttaata tttaaggttg acagaaataa aataaactat      2700
     gacgaagtga atagtgcatt atcgcatatt cttcgttggt ttgatgttaa taatctaatg      2760
     ttaaatgcta aaaaaacgaa atgcatcgag tttgctttac caaatgttaa aaaacataat      2820
     tttaatctaa taattaaagg agaacctctt aatgtgtcgg aatcagctat tttcttaggt      2880
     gttactatag attccaaact ccagtggaac gctcatctgg aagcacttgc agataaactc      2940
     agctctgccg cgttcgcaat taaaaaagta agacaaatga cggacgttga aactgcccga      3000
     ctagtctact atagctattt ccatagtatt ttatcttatg gaatgctgct atggggcagt      3060
     gcttcagata tcaattcaat atttattctc caaaaaagag ccgtgagata tatttataat      3120
     ctaagagctc gagattctct gcgagatgtt ttcaaagatg caggtattat tacagttgct      3180
     tcccaattta tatactataa tattctcttt gtccgacaaa atatacattg tcataghaaa      3240
     vatagtgaca gtcatacgat agaaacgaga aataaagata agcttgttac dccaagtttt      3300
     cgcctccaaa aagttaataa atcytttatg ggtctgagta tacgtgtata taataaaatt      3360
     ccgcagtgta ttcttagttt gccactacca aaatttaaaa tatctgtaaa aaaaattcta      3420
     acaagtaaag cttattacac tgttcaagaa tatttagagg ataarcatgt atggaattaa      3480
     tgtctattga atgtaatgca ggatagctgc cagctaatgt aatagattgt accattgatt      3540
     ttgaaaagag caactgttga gtttcttgcc ggctcttctc agcagaactg ccttccgaac      3600
     cggtggtagc tttttgttca tatgttcatt cgacgattca aaagtgctta taataattyt      3660
     atttgaataa agaatatttt gaatttgaat ttgaat                                3696
//
ID   Daphne-2_HMM repbase;    DNA;    INV; 3504 BP.
XX
AC   .
XX
DT   09-FEB-2013 (Rel. 19.10, Created)
DT   09-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3504
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2787-2787 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..3008
FT                 /product="Daphne-2_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDHLVTMLPXNDISNDIDXAQVSDAMVCSPEDPGNRI
FT                 NTSXTSLTVMHTNIRSVSCNFDAFAVLLERICVRFDVLILTECWLSNTTNP
FT                 PCIEGYTSYCSDYQNQNDGVIIYVKSALKHSISKFALSDASSLILKYNNEY
FT                 AIVAVYRSPSSSNISNFCDSLDLCLSSLKHVKSVAVIGDMNINIAPNSSDL
FT                 NXGTYLDMMAFHGFLSAHNFPTRNENCIDHVMLRTNRHAATYILDSYVTDH
FT                 APLVLCLLCNIKYDRSKITISRIDYPSLXQSLSEIDYTCVLNSTDANTAAX
FT                 LLTNIISEAITAHSRSIKVSHRKRPIKPWLTPGLVRCIRHRDRLHQKTKRD
FT                 PTNAILRVTYTRYRNFCTNLIKKVKIAYEKNEFLRYKNNPKGTWNTINKIT
FT                 CFKQISPSPAVLLDLHSDPHVSVNIVNNHFAEIGATYANAILTKRPHNLSP
FT                 ENTIKNPHPYISYDSMVLYDTDNDEIKTIISNLKEDSAPGIDGIHTVVIKK
FT                 VSVSIIPALTHIINTCFSSGVFPDIFKRALIHPIYKSGDRNSVNNYRPISI
FT                 LPVLSKILEKILNKRLTXYLQRHNILANNQFGFIKNKSTEDATLLLTETIA
FT                 KHLDNKSKVIGLFLDLSKAFDTVSIPILLNKMETFGIRGIVLDIFRSYLTN
FT                 RSQYVKIDQFVSDKAGISFGVPQGSVLGPTLFLLYVNSLCNMSLPNCKXIA
FT                 YADDTVLIIHGREWIEAKNYAENAIRLVTQWYDDNLLTINIDKTKFVAFSH
FT                 RLSSQPTSDFVIKAHTCSRQNDCSCLDLSRAFNIKYLGVTIDCCLSWSLHI
FT                 HNLXNRIRKIIPVFKKLRNSCDSDILLTVYYALVQSVLSYCIVVWGGASKN
FT                 AXLSLERAQRAILKVMLRKPRRYGTDLLYRDTSVLSVRKLFIMLVILRKHR
FT                 SIVFRPNCNRNKSRVCETLYSRTRSARTHFYXISGHIYNKINKHKYIYPLP
FT                 FIKCKKIIRTWIHKLSYIETENFLLN"
XX
SQ   Sequence 3504 BP; 1109 A; 733 C; 557 G; 1078 T; 27 other;
     tacactgcgt ccaaatacga gwtatcaaaw aaskttmggc tcgtacttac taaagaaatg        60
     cccmaatgga ccatctggtt acaatgctgc cctwaaatga catatctaat gacatagatw       120
     ctgctcaagt gtctgatgcc atggtgtgtt ctccggaaga cccgggtaac cgtattaata       180
     catctmagac ttctctaact gtaatgcata ccaacatwcg tagtgtatcc tgtaacttcg       240
     acgcatttgc tgttctcctc gagagaattt gtgtcaggtt tgatgtactg attctwactg       300
     aatgttggct ctctaataca acaaatccac cttgtattga aggatacact tcctactgtt       360
     cggattatca gaaccaaaac gatggtgtta taatctacgt taaatcagca ttaaagcatt       420
     caattagtaa gtttgcacta tccgatgcta gttctcttat tctgaaatat aataacgaat       480
     atgctatagt ggcagtctac cgatcaccat ctagcagtaa catcagtaac ttttgtgata       540
     gccttgattt atgtctttca tcccttaagc acgtcaaatc tgtggctgta attggtgata       600
     tgaatattaa tatcgctcca aacagttccg acttaaatwg tggtacatat ttggacatga       660
     tggcwttcca cggtttttta agcgctcaca attttccgac tcgtaacgaa aattgcattg       720
     atcatgtaat gctacgaacc aacagacacg cagctacgta tattcttgat tcatatgtga       780
     ctgatcatgc gccgttggtt ttgtgcttat tatgtaacat aaaatatgat aggtctaaaa       840
     ttactatctc tagaatagac tatccgtcat tatktcaatc tctttctgag attgattata       900
     catgtgtgct taactctact gatgccaata cagccgctwc actcctgact aatataattt       960
     ctgaagctat aactgctcac tcaagatcaa ttaaagtctc acatcgaaaa cgtccaatca      1020
     agccatggtt gactccggga ctwgtacgat gtattagaca ccgtgacaga ctgcatcaaa      1080
     aaactaaacg tgacccgacc aatgcgatac taagagttac ttacaccaga taccgtaact      1140
     tttgtactaa cttgataaag aaagtaaaga ttgcttatga gaaaaatgaa tttttgagat      1200
     ataaaaataa tccaaaaggg acgtggaata caattaataa aattacttgt tttaaacaga      1260
     tctcaccttc tcctgcggtc ttactagatc tacatagtga tcctcatgtc tctgttaaca      1320
     ttgttaataa tcattttgct gaaattggtg cgacatatgc caacgccata ctcactaaac      1380
     gtcctcataa tctaagtcca gaaaatacca tcaaaaatcc tcatccttat atttcatatg      1440
     actccatggt actttatgac acggataatg atgagatcaa gacaattatc tctaacctaa      1500
     aagaagattc tgctcctggt attgatggca ttcacacagt ggtaattaag aaggttagcg      1560
     ttagtataat ccctgctctt actcatataa ttaatacttg cttttcaagc ggtgttttcc      1620
     ctgacatttt caaaagagct ctgattcatc ccatctacaa atcaggtgat agaaacagtg      1680
     tcaataacta tagacctata tcgattcttc cagtcctttc aaagatctta gaaaaaatac      1740
     taaataaaag attaacacak tatctccaac ggcataatat ccttgctaac aatcaatttg      1800
     gtttcattaa aaacaaatcc acagaagatg ctactttgtt gcttacggaa accatagcta      1860
     agcacctgga caataaatca aaagttatcg gacttttcct tgatttatct aaggcattcg      1920
     acactgtttc tatacccatc ttgcttaaca aaatggaaac ttttggtata cgtggcatag      1980
     ttctagatat ctttcgctcg tatttaacta accgctctca gtacgttaaa attgatcaat      2040
     ttgtaagtga caaagcaggt atttcatttg gagttccgca gggaagcgtt ctgggtccca      2100
     ccctattcct gttatacgta aatagcctat gcaatatgtc gctgcccaac tgtaaaatsa      2160
     tcgcttatgc agacgacact gtgttaataa tacatgggag agaatggatt gaggccaaaa      2220
     attacgccga gaatgctatc agattggtga cacaatggta tgacgacaac cttttgacta      2280
     tcaacattga taaaactaaa tttgtggctt tctctcaccg actcagctcc caaccgacwt      2340
     ctgactttgt tatcaaagcg catacttgct ctcgtcaaaa cgactgcagt tgtcttgatc      2400
     tttctcgcgc cttcaatatt aaatatttgg gagttactat mgattgctgt ttaagctggt      2460
     cacttcatat tcacaattta kccaaccgca tacgtaaaat aattccggta tttaaaaaac      2520
     taagaaactc atgtgattct gacatcctac tcacagtata ttatgccctc gtacaaagtg      2580
     ttctaagcta ttgcatcgtc gtttgggggg gcgccagcaa aaacgcamta ctttccttag      2640
     aacgcgcwca aagagccata ctgaaagtta tgctacggaa acctaggcgt tacggtacgg      2700
     atctactcta ccgtgacacc tctgttctat cagtcaggaa gctcttcata atgttggtaa      2760
     tactccgcaa gcatagaagt attgttttca ggcctaattg caaccgtaat aagtccaggg      2820
     tctgtgaaac tttgtattcc agaacgaggt ccgctcgcac gcacttttac wttatcagcg      2880
     gccacattta taataaaatc aataaacata agtatatata tccactacct tttattaaat      2940
     gcaaaaaaat aattagaact tggattcaca aactgtccta cattgaaact gagaattttc      3000
     ttctcaacta aataaataca cacttacata tctaaaagca caaccggcat gcacgcatac      3060
     acacacacac acatacaccc acacacacgc ggacacacat acatatcaca catacacata      3120
     cacatacaca tatcacacat acacatactc acacatacac atactcacac atactcgatg      3180
     ttacgctcgg cgtgataatt acgctttgtt catcgatcaa tagttttata agtctagtta      3240
     gttttttctt ttttgttttg acgattttga aagattatat agtgtttctt gttttccact      3300
     ttatgtttat gcactttata tttataatat ttaactgata attaatgmtt caaatgtcta      3360
     aaacgtcatw aaaattgtaa aggggcaaag acgctggtgg ctgtgacaca gtctatacta      3420
     gtacggctac caacgcactc ctcttcactt aagaggcaat ttgtaaaata taagttgatt      3480
     tgaataaatt katttgaatt aata                                             3504
//
ID   Daphne-2_LMi repbase;    DNA;    INV; 3034 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.11, Created)
DT   03-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3034
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3116-3116 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1034..1984,1900..2802)
FT                 /product="Daphne-2_LMi_1p"
FT                 /translation="MCIMSEISTSNNKIKTIWNIITRETGQPRTQEDSITI
FT                 KVNEKITNKKSEVENTFNNYFLNVVENIGSKCSLEEARQLMEQGVPRQFDT
FT                 MEIPPTSQSEIRKLINSLKSKSSHGIDGISSRVLKACSQEICRILSHICNS
FT                 SLEQGIFPDRLKYAIVKPLHKKGDTLDVNNYRPISLLTALSKILEKVMYSR
FT                 VASHINKNKVLTKCQFGFQKGFSTENAIYIFTNEILNALDNRKSPVGIFCD
FT                 LSKAFDCVNHGILLDKLKYCGMSGKVHKWFKSYLTGRVQKVDISNSHNIQK
FT                 QPSPQTGELSSMGCHRVRYWDLCCSYTKTAESSNWGTIKHGVPQGSVLGPL
FT                 LFLIYINDLPFYIHKDAKLVLFADDTSIAITPESQELTDEIVNEVFQRIIR
FT                 WFSVNGLSLNFEKTQYIQFHTINGITPLINIDFNQKSVAKVEYSKFLGLCI
FT                 DEGLNWKKHIEDLLKRLSSATYAIRVIANFGDVQLSKLAYYAYFHSLLSYG
FT                 IIFWGNSSFSKKVFIAQKRVIRIIAGAHPRSSCRHLFKDLGIFTIYIYIYS
FT                 LMKFVINNPTEFKCNSSVHSYNTRRKGDLHYSRLNLALSQKGVNYSATKVF
FT                 GHLPSSIKILTDSQLAFKKN"
XX
SQ   Sequence 3034 BP; 1075 A; 482 C; 557 G; 919 T; 1 other;
     tttcaccaga atattggggg actgaagaat aaagtagatg agcttctggt ttgtttagat        60
     gctatagaaa ctgacaatgt aatagatata ctatgcctgt ctgagcatca cattgtcact       120
     gatatggata aagtaaatat tagtgggtat aaactagcag cacatgtaag tagagagaag       180
     aaggtgtggg gaggagttgc catttatgtc aaaagttgtc acagtgtaaa aaatttagaa       240
     acaaaaaagt tttgtataga gcaacatata gaagcatgtg cctgtgagct taaactgaag       300
     ggtggttctt ttataattgt cacagtgtat aggcccccct caggaaactt tcattattcc       360
     tggaaaactt ggatgccttg ttgtgctatc tgtcagatag ggggaagcaa attattatct       420
     gtggggattt caatgttgat tcactgcaag agtgtaatag gaagaatgac ctggaagtct       480
     tactcggttc tttcaatttg acatctgtta ttgattttcc tactcgggta gtaaaggaca       540
     gcagcacatt gatagacaat tttttataga ccaagatagg tttaacaaca ttagtgcatg       600
     tcctgttgag aatggtcttt ctgatcatgg tgcacagcta gttacattat atgatatagc       660
     tcctttcagt aatttgaatc agtcctccaa agttgttcgt tcaattaatg attcgacaat       720
     tagaaatttc acggaaagtc ttcagcagtt agattgggat gaagtgtaca aggaacctga       780
     tgctaattta aaatacaact tatttcatga tacatttgta agggtatttg ataactgttt       840
     ccccaagaaa ttagtcaaat ttaattgtaa ggaaccaagc aaaaaaccat ggctcaccaa       900
     aggtataaaa atatcttgta accggaaaag ggaactgtat ctgacagcaa gaaagagtag       960
     tgacccagaa atattcaact attataaaaa ctactgttct gtattaagga aagttattaa      1020
     aaaatccaaa agcatgtgca tcatgtctga gattagtaca tccaataata aaattaaaac      1080
     aatctggaat attataacaa gggagacagg gcaaccaaga acacaggaag acagcattac      1140
     catcaaagtg aatgaaaaaa ttacaaacaa aaagtcagaa gttgaaaaca cttttaataa      1200
     ttatttttta aatgttgtgg agaatatagg atccaaatgt tcattagaag aagctaggca      1260
     gttaatggaa cagggcgtac ctagacagtt tgatacaatg gaaatcccac ccacctctca      1320
     atctgaaatt aggaaattaa taaactctct caagagtaaa agctctcatg gcattgatgg      1380
     catatccagc agggtattaa aagcttgttc ccaagaaata tgtaggattc ttagccacat      1440
     ttgtaatagc tcactggagc agggtatttt ccctgataga ctgaaatatg ctattgtcaa      1500
     accactgcat aaaaaaggtg atacgttgga tgtcaacaac taccgcccaa tctcacttct      1560
     gaccgctcta tcaaaaattc ttgaaaaagt aatgtattcc agagtagctt cacatattaa      1620
     taaaaataaa gttctaacaa aatgtcagtt tggtttccag aaaggctttt caacagaaaa      1680
     tgcaatatat attttcacta atgaaatatt aaatgctctg gataaccgta aatcacccgt      1740
     tgggattttt tgtgatctat caaaggcctt tgattgtgtt aaccatggaa ttcttctaga      1800
     taagcttaag tattgtggta tgagtgggaa agtgcacaaa tggtttaaat catacctaac      1860
     tggaagagtt cagaaagttg atataagtaa ttcacataat atacaaaaac agccgagtcc      1920
     tcaaactggg gaactatcaa gcatggggtg ccacagggtt cggtactggg acctttgctg      1980
     ttcttaatat atattaatga tttgcctttc tatattcata aagatgccaa gctagttctc      2040
     tttgctgatg atacaagtat cgctatcaca cccgaatcac aggaattaac tgatgaaatt      2100
     gtcaatgaag tatttcagag aattattagg tggttctctg taaatggact ctctttaaat      2160
     tttgaaaaaa cacagtatat tcagtttcac acaataaatg gcatcacacc attaattaat      2220
     attgacttta accagaaatc tgtagctaag gtagaatatt caaaattttt aggtttatgc      2280
     attgatgagg gattgaattg gaagaaacac attgaagatc tgctgaaacg tttgagctca      2340
     gctacttatg ctattagggt gattgcaaac tttggtgatg tacaactcag taaactagca      2400
     tactatgcct attttcattc tctgctttct tatggcatca tattctgggg caattcatca      2460
     tttagtaaga aagtattcat tgcccaaaag cgggtcatca gaataattgc tggagcccac      2520
     ccaagatcat cctgcagaca tttatttaag gatctaggaa tcttcacaat atatatatat      2580
     atatattcac ttatgaaatt tgttattaac aatccaactg aattcaaatg taatagcagt      2640
     gtgcatagct acaacactag gagaaagggt gacctacact attcaaggtt aaatttagct      2700
     ctgtcacaga aaggggttaa ttattctgcc acaaaagtct ttggtcactt accaagtagt      2760
     atcaaaattc tgacagatag ccaactagca tttaaaaaaa attaagggaa tttctgaatg      2820
     gcaactcctt ctacacatta gatgaatttc tagataaaag ttagtacttt aggaaaaaaa      2880
     ttaaaaataa aaaaaaaata aaataaaata ttcaaatatt gagtgtcatg taatattatg      2940
     tatagacaca tttcatttaa ctgacacgtt ccacatcatt acgaagtgtc gtatwcatga      3000
     tctatggaac aagtattaat ctaatctaat ctaa                                  3034
//
ID   Daphne-2_PPo repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-227
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3108-3108 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 227 BP; 82 A; 26 C; 20 G; 99 T; 0 other;
     taattaaaca aacatttaaa atgtaatttc atatccatct agtaatactt tacacatgta        60
     cttacctgtt tgtattcaat agtttttttt tttactacct acattttgtt atatttttgt       120
     gtacgcttgc attatataat aatataaatg ttagataaat aagttcctta agtaagtgaa       180
     ttttgtaatt cttattaagg aaataaatat attcttaaac cttaaaa                     227
//
ID   Daphne-30_LMi repbase;    DNA;    INV; 3651 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3651
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3402-3402 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(740..1381,1351..1557,1550..2746,2712..2879,
FT                 2883..3254)
FT                 /product="Daphne-30_LMi_1p"
FT                 /translation="MKCGGCCIYVKHNYPFKVRSDLGATSEEKHFELAAVE
FT                 IRDKLMCRNLIILCIYRAPSGDFNIFLSKLNHVLDLISSPKNNILICGDLN
FT                 VDKLNPDDTWDSLLSLAQSFNLVPMVNTATRITKHSKTAIDQVLTDLNEDK
FT                 CTVVVAELGFSDHSGQIINVKVAPEKTKKMHVYKRIFSKQKRCEFIKQIAG
FT                 QTWESVYSEVDTNEKFKKSCHYLNKIQKIMSLFKLKFEETFPKVLRPLPIV
FT                 GKNKWVTKSIKKSSQTLKYLWSIKHSQITLPSHTFIKAIGKVEKYRKVLLA
FT                 AKRAQNSKTVLNAENKNKAVWKIVKQETGNRKVNLSNIKVKEEGAVIKDPI
FT                 YLANYINNYFSSIGIKLQKQFQTVPQSKKSEIGVSHSMVLFPTTEEEVYKA
FT                 VLKLKNKNSAGLDEVPICLIKDCIERLLPPLVDIINQSFKQGCFPDYLKYA
FT                 KLLPLHKKGDPEKIENYRPISVLSCFSKILETIMKDRLMNYLNKYNLLSND
FT                 QFGFQSGKGTETATAHLTKHILEALDKGNHTTGIFLDLTKAFDTVDHDILL
FT                 SKLEELGIRGVVKNWFQSYLQNRIQKTEISHVSNCSNYIVKYTSDPNYINI
FT                 GVPQGSVLGPILFLIYINDFPQSIAHGQTILFADDSNVLITDKSADILKEK
FT                 TEETLNSVREWASSNKLTLNLKKKKKKCCEFLCKKKKKNVVNFYVNKKPQY
FT                 NDLKINDNYIQCVENTKFLGMHVDSQLKWEEHIRIIRNISTACYALRILTA
FT                 VCDTSCVRSVYFSYIHSVISYGIIFWGVNSKNIQTIFKLQKRAVRIITKSG
FT                 SRAHCLEHFQTLEILTVPCEFIFQSIMYVKKILTALKKILRYMIIKLGTVV
FT                 ICILKEKIK"
XX
SQ   Sequence 3651 BP; 1463 A; 593 C; 613 G; 981 T; 1 other;
     cctggmattc gaccataccg aaattgcgaa acacttcaaa aacattataa acatgaaagc        60
     cgaaccaaaa agatagtgat gtctcaaaca caaattttaa aggtgtgata attcagtagg       120
     aacaaattct atccaaagca gcagtcaaga cgaaatcata aatgatacca gaaatgtaat       180
     tcacacagcc agaggcttgt ttacaaactt taattatcat tctaaaggag atcggtgagt       240
     aatgcctaca tcagcaaaat aaacactggc atagacaaca gtgtgacgaa cttggtgctg       300
     ttttcgttga ttcaaaaaat ttctgagtga caaatgttta ggcaggatgg cctacaccta       360
     aacaggctaa gcacaatact ttcagtaaaa tgatccagga catatgtaaa taattagaag       420
     taagggaaac taatacagtc tacaggcggt gattgtacaa aaaaagcaaa aaaaaacaaa       480
     aaatgcgagt gtaatcaaat aaaaacaaaa taaaactaac tcaaagtaaa agcaaaatgg       540
     gggggagaat aatttaggcc taacagttgt tcaccaaaat attcagtctc taggaaacaa       600
     aatccagcag ctagaagtgg agctggagtc tacagatagt gcagttgttt gtctcacaga       660
     acattggtgc aatgaggcag aaattaatca tttagtattg caatcatata atttagcatg       720
     tgcatactgt agaacctcta tgaagtgtgg agggtgttgt atttatgtga aacataacta       780
     tccatttaag gtaagaagtg atttaggtgc aactagtgaa gaaaaacatt ttgaattggc       840
     agcagttgaa atcagggaca aacttatgtg tagaaatttg attattttat gtatatacag       900
     agctcccagt ggagatttca acattttttt atctaaactg aatcatgttc ttgatttgat       960
     aagcagtcca aagaacaaca tcctcatatg tggtgaccta aatgttgata aactgaatcc      1020
     tgatgacaca tgggactcat tactaagtct cgctcaaagt ttcaacttag tgccaatggt      1080
     aaatactgca acaagaataa caaaacattc aaagacagct attgatcagg tattaacaga      1140
     tttaaatgaa gacaaatgta cagtggttgt agcagagtta gggttctctg atcactctgg      1200
     tcaaatcata aatgtaaaag tggctccaga aaaaacaaag aaaatgcatg tttacaaacg      1260
     aatattctct aaacaaaaga gatgtgagtt tattaaacaa atagccgggc aaacatggga      1320
     atcagtatac tcagaggtag acacaaatga aaaattcaaa aaatcatgtc attatttaaa      1380
     ttaaaatttg aagaaacatt tccaaaggta ttacgtccat tgccaatagt ggggaaaaat      1440
     aagtgggtca caaaaagtat caaaaaatca tcccaaacac tgaagtacct ctggtccatt      1500
     aaacacagtc aaataaccct gccttctcac acttttataa aagctatagg aaaagtatag      1560
     gaaagtattg cttgcagcga agagagctca aaactccaaa acggtactca atgccgaaaa      1620
     caaaaacaaa gcagtgtgga agatagttaa acaagaaact ggtaacagaa aagtaaatct      1680
     gtcaaatata aaagtcaaag aggaaggggc tgtaattaaa gacccaattt atttggcaaa      1740
     ctatataaac aactacttta gcagcatagg aataaaatta cagaaacaat ttcaaacagt      1800
     ccctcagtcc aaaaagtcag aaattggtgt atcacattca atggtattat tccccacaac      1860
     cgaggaagaa gtctataaag cagttctcaa actaaaaaac aaaaactcag ctggcctgga      1920
     tgaagtcccc atttgtctaa ttaaggactg tatcgagagg ctacttccac ctttagtaga      1980
     cattataaat caatctttca aacaaggctg ctttcccgac tatttaaaat acgctaaatt      2040
     gctacctctc cacaaaaaag gtgatcctga aaaaatagaa aattacaggc caatttctgt      2100
     actttcgtgt ttctcaaaaa tactagagac tattatgaaa gacagactta tgaattactt      2160
     aaacaaatac aatctactat ctaatgacca gtttggtttt caatcaggta aaggcactga      2220
     aacagcaaca gcccacctca caaaacatat cctagaagct ttagataaag gaaaccacac      2280
     aacaggtata tttcttgatc taacaaaagc tttcgataca gtggatcatg atatattatt      2340
     aagcaagcta gaggaattgg gaataagggg ggttgtaaaa aattggttcc agtcgtatct      2400
     acaaaacaga atacagaaaa ctgaaatctc acatgtgtca aactgctcaa actacattgt      2460
     aaaatatact tccgatccaa attatattaa tataggtgtg ccacagggta gtgtccttgg      2520
     cccgatactc ttcctaatct acataaatga ttttccacag agtatcgcac atggacaaac      2580
     aatattgttt gcagatgatt caaatgtgtt aatcacagac aaatcagcag acatactgaa      2640
     agaaaaaacc gaagaaacac taaacagtgt acgtgagtgg gcatccagca ataaactcac      2700
     acttaacttg aaaaaaaaaa aaaaaaaatg ttgtgaattt ctatgttaat aaaaaaccac      2760
     agtataacga cttaaaaata aatgataatt atattcaatg tgtggagaac acaaaatttt      2820
     taggcatgca tgtagacagt cagctaaaat gggaagaaca cattagaata attagaaatt      2880
     aaatctccac agcatgctat gctcttagaa ttctgactgc agtatgtgat acgtcatgtg      2940
     taagatctgt atatttttct tatattcact cggtcattag ttacgggata attttttggg      3000
     gagtaaacag taaaaatatt caaaccatct tcaaattaca gaaaagagca gtacgcataa      3060
     taacaaagag tggtagtagg gctcactgcc ttgaacactt tcaaacactg gaaattctaa      3120
     ctgtcccgtg tgaatttatc tttcaaagca ttatgtatgt taaaaaaata ttgactgctt      3180
     tgaaaaaaat tcttcggtac atgattataa aactaggaac cgttgtaatc tgcatcttga      3240
     aagaaaaaat aaagtgaaaa ctcagcagag cttatggtac aatgctgtta aaatgtataa      3300
     taaactacca caaaatataa aagacattga gaaaattgat cagttcaaaa taaaactaaa      3360
     aaacacttac tcaacaaatg ttactacaca gtaatggact atgttaccta aattaaaaag      3420
     gttatgtaca gaagtttaca ttgcaatata tgatgaaatt aataactgta tgaacatatt      3480
     gtaaaatagt ataaaaacaa atgtaagata taaaaacaaa tgtaagatgc tttaaatttc      3540
     tgtgtgaaat attttcttat gtttacaatc tgtatattat ttttgttgac gaaatccata      3600
     taatgtaaat tattacacag attaataaaa gaaatcaaat caaatcaaat c               3651
//
ID   Daphne-31_LMi repbase;    DNA;    INV; 4142 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4142
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3403-3403 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(494..892,796..984,975..1202)
FT                 /product="Daphne-31_LMi_1p"
FT                 /translation="MTCGVVKPGACFRDIASSAVSEAKDLSSNDTVVLMAG
FT                 ANDVARNNTSXAVNELKKTLSVLTHTNVVVMNIPKRHDLESRSCVNEEISR
FT                 ANEKYSRICKHFRNVVLSMLLTVIAAFSLGMGNISTPLARIICVAKCSIVN
FT                 VANCNRSFFTRHGQHLNATGKDNLCSLIIKTVKDRLAHLNGCEPIPMSFIT
FT                 NDSFLGFFRVRQGPILSHVGIKLSQSHDPAVSEMLMNNPASFKDLSNKSER
FT                 SLPGDVGIFQTGRSQFKIGISMFNVSDRNVS"
FT   CDS           join(1307..2488,2413..3243,3251..3739,3691..3984)
FT                 /product="Daphne-31_LMi_2p"
FT                 /translation="MIIYWSAVIVGKSIKMEVQQFILVSIFSTLVLNWNXI
FT                 SFVMSLILRVSGYCLEEARXLIIALYRCPTGDPSIFLDKLDDLFNFLCRPK
FT                 WEKFSITIGGDVNSAFDVTEDNQSVNTLKNLLRQYNFHFLNSKKTRGPACL
FT                 DNIFSNVDRAYCXSEVVTFQFSDHDAVICDLSNIKSPNKSTVVGTCTKKVV
FT                 SRPLNEAVLCNFKEALYNYNWKGLIDSYQCCSADVMFKRFFSVFCTLFEEY
FT                 IPKRVCKVNPLSQKKNKPKNQRQWYTPQLLNMKHRVLFYLDLYRKYKTENA
FT                 RLVYNNAKKEYKLSVNNAKKSYNLSLINRSTNKCKTAWKVINLVSNTGSKQ
FT                 VVNLSPDSFNNFCIQSVEEICRNTVKPNISPIELMKFFQQKIHPQILLLGK
FT                 TQHKPYRADEVFPTKNSSSNFTFREVDPEDVLAVVKTLKSSDSVDIFDLSS
FT                 NIIKRIIECIIEPLTYLINRCFSEGIFPTVLKLSRVVPIFKKGDKTCPSSY
FT                 RPISITPIFSKIIESIMYSQLSSHLEHYNLVCNEQFGFRKGRSTVDAMDTL
FT                 VKKVLEVFEARGFAQATSCDLSKAFDCVDHGLLLEKLFHYGIRDASIKMFK
FT                 SFLSDRQQIVCIGNDRSDVATLRYGVPQGSILGPLLFVLMINDLPTFMNTQ
FT                 TILYADDTTFLTVVMISMNCTIMYNISGLIWFRANGFCLNEGKTQQIFFTL
FT                 CNLPDIDNQGSIXFLGLNIDSKLSWEPHIKYISARLSRVIFLPRKLKSCVP
FT                 DTYVRSAYFAFFQSIISYGPHYFWGNSSHAHDILMLQKRVVRVITGSGKWE
FT                 HAKPLFIKLGCLTVVNIYHVLIYIKIIYPASSYISRFNLHKNNLSSQLLKE
FT                 DIHSYNTRNCKKINVPFCRLSKSLDSYNVLGLKMFNKLPAEISNLPLNLFK
FT                 CRLYNRLVANPFYSVNEFFECDSFEISV"
XX
SQ   Sequence 4142 BP; 1405 A; 647 C; 757 G; 1321 T; 12 other;
     cgggtatgtc tgattaatat ggctgctgca caacggaatg cccaggaaga aatgaaccta        60
     gaaaaagtta tttcactgct acgagaggac attaaagatc tccaattaga aaatgctaaa       120
     ctaagggaaa aggttaatgc tctcaacaac agtgctgctg ctgaaagagt gcaacgatct       180
     tggaagctgg aaatctgttc caggaaggaa ctttcacaaa caagcaaaaa aactatgaaa       240
     ccaacttccc tcctctaaaa aataagtttg aagtgttatc tatagtacct gaaaatagcg       300
     acagtggcaa aaacgtgata actgacgaat gtgaacaatc cgaagtgtgg cctttcacat       360
     ctgcagataa acacagacwc atttcagttc aaaataaaag taaaactaaa agaggtaaaa       420
     tacttctttt tggtgacagt catggtagag gtatttcttc caaactgaat caattgagag       480
     ccttcagaat tatatgacat gtggagttgt gaaaccaggg gcatgctttc gtgacatcgc       540
     ctcatcagct gtaagtgaag ccaaggatct ttcatctaat gacactgtgg tgctgatggc       600
     gggagcaaat gatgtggcca ggaataatac ttcagakgct gttaatgaac taaagaagac       660
     tttgtcagtg ctcacacaca caaatgtagt tgtgatgaat atccccaagc ggcatgatct       720
     tgagtctagg tcttgtgtta atgaggaaat atcaagggca aacgaaaaat atagtcgaat       780
     ttgtaaacat tttagaaatg tagtattgtc aatgttgcta actgtaatcg cagctttttc       840
     actaggcatg ggcaacatct caacgccact ggcaaggata atttgtgtag cttaattata       900
     aaaactgtaa aagacaggct tgcacactta aatggttgtg aaccaatccc watgtcattt       960
     attactaatg atagtttttt agggtaaggc aaggtcctat tttgtcacat gttggtataa      1020
     aattaagcca aagtcatgac cctgctgttt ctgaaatgtt aatgaataac cctgctagtt      1080
     ttaaagattt aagtaataag tctgagagaa gtctcccagg agatgtaggc atattccaaa      1140
     caggtagatc tcagtttaaa ataggtatct caatgttcaa tgtatcagac agaaatgtga      1200
     gttagtaaat attttgctgt tgataatttg ktagacattt tgtccccccc ccgcgtmtaa      1260
     gtgagcatgg tgtgtgaaag ccaagaattg ccatatgaac tattagatga ttatttattg      1320
     gtcagcagtt attgtaggga aaagcataaa aatggaggta cagcagttta tattagtaag      1380
     cattttcagt actctggttt taaattggaa ctasatttcc tttgtcatga gtttgatttt      1440
     gagggtttca ggttactgtt tagaagaagc tagattkcta ataattgctc tttatagatg      1500
     cccaactgga gatccttcta tctttttaga caaacttgat gacttgttca actttttatg      1560
     taggccaaaa tgggagaaat ttagtattac tataggggga gatgtcaatt cagcatttga      1620
     tgtaacagag gataatcaaa gtgtgaatac attaaagaat ctattaaggc aatacaattt      1680
     tcattttcta aattcaaaaa agacaagggg accagcatgt cttgacaata ttttttcaaa      1740
     tgtkgatagg gcatattgtw cctcagaagt agtcactttt cagttttcag accatgatgc      1800
     tgtgatttgt gatttaagta atatcaagtc acctaataag agtactgtag ttggtacatg      1860
     tactaagaaa gtagtttcaa gacctctgaa tgaagcagtt ttatgtaatt tcaaggaagc      1920
     attatacaat tataactgga aagggttaat tgacagttac caatgttgct cagctgatgt      1980
     tatgtttaaa aggttttttt cagtcttttg tacacttttt gaggaatata ttccaaaaag      2040
     agtatgcaag gttaatccct tatcacaaaa aaagaataaa cctaaaaacc aacgtcagtg      2100
     gtatactccc caattactga atatgaagca cagagtactg ttttatttag atttgtatag      2160
     aaaatataag acagaaaatg ctagattagt gtataataat gctaagaaag aatacaaact      2220
     gagtgtcaat aatgctaaga aatcttacaa cttaagttta attaacagat ctaccaataa      2280
     atgcaaaact gcatggaaag ttatcaactt agtttccaat actgggagta aacaggttgt      2340
     gaacttatcc ccagacagtt ttaacaattt ttgtattcag tcagtggaag aaatttgcag      2400
     aaacacagtt aaacccaaca taagccctat agagctgatg aagtttttcc aacaaaaaat      2460
     tcatcctcaa attttacttt tagggaagta gaccctgaag atgttctagc agttgttaaa      2520
     actctaaaat catctgatag tgttgatatt tttgatctgt ccagcaatat cattaaaaga      2580
     ataattgaat gcattattga accattgacc taccttataa atagatgttt cagtgaagga      2640
     atctttccta ctgttttaaa attgtctaga gtagttccca tctttaagaa aggcgataaa      2700
     acatgtccat ctagctatag acctatctcc attactccta tattttccaa aataattgaa      2760
     tctattatgt attctcaact tagttcccat ctagaacact ataacctagt atgtaatgag      2820
     cagtttggct ttagaaaagg cagatcaact gtggatgcca tggacacgct tgttaaaaag      2880
     gttttagagg tgtttgaagc aagaggattt gctcaggcta catcttgtga cctcagcaag      2940
     gcttttgatt gtgttgatca tgggttactg ttggaaaaac tgtttcatta tggaataaga      3000
     gatgctagca ttaaaatgtt taaatcattt cttagtgacc ggcaacaaat cgtatgtata      3060
     ggtaatgata ggtctgatgt agccacgctt agatatggtg taccacaagg ctcaatctta      3120
     ggccctttgc tatttgtgtt aatgatcaat gatttaccaa cttttatgaa cacacaaact      3180
     atattgtatg cagatgacac tacattttta acagtagtta tgatttcaat gaactgcaca      3240
     atttaactga atgtacaata tctcaggcct catttggttt agagctaatg gcttttgttt      3300
     aaatgaaggt aaaacacaac aaatattttt tactctttgt aatttaccag atatagacaa      3360
     ccaaggtagt attamgtttt taggcttaaa catagacagt aaactctctt gggaaccaca      3420
     cataaaatac ataagtgcta gactttctag agtaattttt ttgccgagga aattaaagag      3480
     ctgtgttcca gatacatatg ttagatcagc atactttgcw ttttttcaga gcatcatctc      3540
     ttatggwccc cattattttt gggggaatag cagccatgcc catgatattc ttatgctaca      3600
     aaaaagagtg gtgagggtta tcacaggctc aggcaaatgg gaacatgcaa aaccattatt      3660
     cataaaatta ggttgtctta cagttgttaa tatatatcac gttttaattt acataaaaat      3720
     aatttatcca gccagctctt aaaagaagac attcattctt ataatacaag aaactgcaag      3780
     aaaataaatg tcccattctg tagattgtct aaatcattag atagttataa tgtgctaggc      3840
     ctgaaaatgt tcaataagtt acctgcagaa ataagtaatt tacctttaaa tttatttaaa      3900
     tgcaggttgt ataacagact agtggctaat ccattttatt ccgttaatga attttttgaa      3960
     tgtgactcat ttgaaatttc agtatgataa catgaatggg gagataccat tcaatatttt      4020
     aacatactac tcactgtatg aagttatcca cacaatattt tacttatgta ttattattaa      4080
     tattgacttt gtctattgct tgtaaaagtt caatgacaat aaaattcata ttattattat      4140
     ta                                                                     4142
//
ID   Daphne-32_LMi repbase;    DNA;    INV; 3756 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3756
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3404-3404 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(623..868,862..1602,1512..1871,1816..2574,
FT                 2600..3061,2952..3311)
FT                 /product="Daphne-32_LMi_1p"
FT                 /translation="MSGIEKLVLDNYCLATSYCRKFLEKGGVTIYVRNNIT
FT                 CSAINVQNFCIDKQFEVCAIELALNNSYIAVVALYRAPSGNFSIFHFLKQL
FT                 DALLIYIFKLSRDVVVVGDFNANFLTNSKDRIDLENLMSTYNLASVVNFPT
FT                 RITSRTKSLIDNVFIDITKIDDIVVRQVLNGLSDHDGQRLTINNTSIGEID
FT                 SAPNWKINRKFTDEAIEIFKSRLQNVDWSPVYNVENANSKYNLFSNEVALI
FT                 FESIFPKRIYKTHTKKSTYKPWITTGIRISCKRKRELYIASKKSDDPNMLN
FT                 HYKKYCKILNKVFRNQKVCICAXKLITLQIKSKQYGKNIEQSIQKSKSMYL
FT                 CXKINNSTNKIKTIWEVIRNETGANYPNKTQNIALKNEGKLVQNQEIVAKI
FT                 FNEHFLTVAEKTACKGSSDKAIKILKELLPNSIDMIGMAPHNCARSKKNHS
FT                 FFTKVWPPITVQEVKKTIVSLQSKNSSGVDNISSKLLKASCNQLTKVLAHI
FT                 FNASLNQGIFPNRMKYVTVKPLYKKGDPTDVSNYRPISLVTAFSKVFEKLI
FT                 YVRIVNHLEKFALISKQQFGFRSGVSTTKAIFSLTNNVLECLDKKKLPIGI
FT                 FCDLTKAFDCVNHGILLEEAAQYGIRGQMGNWLRSYLEDRQQKIVLXVKNL
FT                 QVGEVESDWAAVHHGIPQGSVLGPLLFIIYINDLPMSSNSETISQCLQMTQ
FT                 VLHELNTNQALANVLNWFTANSLAINLNKTNYMQFQSSYKSPEEITVAHEN
FT                 QQLQSVQCTKFLGVHIDNRLNWEYHIQQTLKKLSSATFAIRIITKIGDINV
FT                 SKSAYFGYFHSVMCYGIIFWGNSPLSKKKKNCKPEKSSPNSMWCSSKNLMS
FT                 QSLSFGATHHFQKKKKIVSQKKVVRILCGVPPRTSCRNLFKQLGILTTTSQ
FT                 YLLSLMDFTLRNSSEYETNEAYHHYNTRRKGDMHCERKNLSLVQKGVKYAS
FT                 TKIFNSLPSKIKCLKGNKNTI"
XX
SQ   Sequence 3756 BP; 1336 A; 693 C; 622 G; 1099 T; 6 other;
     cttcattgtt ctggatattc cacaacacag gtatkatttg cctcagtact cgtgtgtaaa        60
     cagggctgta gcatatacga acagtcagta tgaagaaatt tgcaacagtt atgsaaatgt       120
     acagatggtt aacgtgcaaa attttagtag agaactttac accactcacg gcctgcacct       180
     aaatcggcgc ggaaaaagtc atttagcgtc cattatttgt gaaatcgtcg taaatkctag       240
     gaacaatgtg tactcaagac atacattctc gaaaaatgag tgctccacaa cacaagaaga       300
     ctgcaggaat ggatatagac agaagacatt ggacaattgg ctgctaaaaa cacaacgtaa       360
     agctgattct tctcagtctc ccagtacatg gaaacagmcc aacttggata aatggtagtg       420
     agtaacacga aacccactgt gtcaactgat acttcgtttt ttaggaataa ctgtataaga       480
     agttctggaa aacataatct gactatttat catcaaaaac atatgtagcc tgagcaacaa       540
     aattaacgaa ctcttaatta atatccagga gccacaaggt atagactgtg cccatgttct       600
     gtgctttagt gagcaccatg ttatgtcagg tattgaaaaa cttgtgctag ataattactg       660
     cttagcaaca tcttattgca gaaaattctt agaaaaaggt ggagtaacga tctatgtcag       720
     aaacaacatc acatgtagtg caataaatgt acagaatttt tgtatagata aacagtttga       780
     agtgtgtgcc atagagctgg ctctaaataa ttcatatata gcagtagtag cattatacag       840
     agcaccttca ggtaacttta gcattttttg aaacagttag atgcactctt aatatacata       900
     tttaaactta gtagagatgt cgtagttgtt ggagatttca atgcaaattt tctaactaat       960
     tccaaagaca gaatagacct agagaacttg atgtccacat ataatcttgc ttctgttgta      1020
     aattttccta ccagaataac ttcacgaaca aaatcattga ttgataatgt atttattgac      1080
     ataaccaaaa ttgatgatat agttgtcagg caagtcctga atggtctctc tgaccatgat      1140
     ggacaaagac tcaccattaa caatacaagt attggtgaga ttgatagtgc tcccaactgg      1200
     aaaattaaca ggaaatttac tgatgaggct attgagatct ttaaatcacg tctccaaaac      1260
     gtagactgga gtccagtgta taatgtagag aatgccaatt ccaaatacaa ccttttcagt      1320
     aatgaagtgg ccctaatatt cgaaagtatc ttcccaaaaa gaatatataa aactcatact      1380
     aaaaaatcca cctacaaacc ttggattacc actggaatta ggatttcatg caaaagaaag      1440
     agagagttgt acattgcctc aaaaaaatca gatgacccta acatgttaaa tcactataaa      1500
     aaatattgta aaatattgaa caaagtattc agaaatcaaa aagtatgtat ctgtgctmaa      1560
     aaattaataa ctctacaaat aaaatcaaaa caatatggga agtgatacga aacgaaactg      1620
     gtgcaaatta ccccaacaag acccaaaaca ttgctctgaa gaatgaaggt aaactagttc      1680
     aaaatcaaga gattgtggct aaaatcttta atgagcactt tctaactgtt gctgagaaaa      1740
     cagcatgcaa aggatcttca gacaaggcaa taaaaatcct gaaagaactt ctccctaact      1800
     ctatagacat gataggtatg gccccccata actgtgcaag aagtaaaaaa aaccatagtt      1860
     tctttacaaa gtaaaaattc atcgggtgta gacaatattt ccagcaaact gctaaaagcc      1920
     agctgtaatc agctcactaa agttttagct catatattca atgcctctct taatcaaggt      1980
     atcttcccta acagaatgaa gtatgttact gtgaaacccc tctacaaaaa aggtgatccc      2040
     acagatgttt caaactatcg ccctatctct cttgtaacag cattttctaa agtctttgaa      2100
     aaattaatat atgtcaggat tgtcaatcac cttgaaaaat ttgcactaat tagtaagcaa      2160
     caatttggtt tcagatcagg tgtatctaca accaaagcaa tattctcact tactaataat      2220
     gtcttagaat gcctcgataa gaaaaaattg cccattggca tattctgtga cctgactaag      2280
     gcttttgact gcgtcaatca cggaatactt ttagaagaag cagcccaata tggaatccgt      2340
     ggacaaatgg gtaactggct cagatcatat ctagaggaca gacagcagaa aatagtatta      2400
     katgttaaaa atctacaagt aggagaggta gagtctgact gggcagcagt acatcatgga      2460
     attccacaag ggtcggttct tggtcccctg ctatttatta tatatattaa tgacctaccc      2520
     atgtcctcaa acagtgaaac aatatcacaa tgtttgcaga tgacacaagt attgtgacag      2580
     ccagcaaaac ctcctctgac atgagttaaa taccaaccaa gcacttgcaa atgttctgaa      2640
     ctggttcaca gcaaattctc tagcaataaa tctcaataaa acaaattata tgcagttcca      2700
     atccagttac aaaagcccag aagagattac tgttgcacac gagaaccaac agttacagag      2760
     cgttcagtgc acaaagttcc taggtgtcca catagataac cggctcaact gggaatacca      2820
     catacagcaa actctaaaaa agcttagctc agcaacattt gccatccgaa taatcactaa      2880
     aattggagac atcaatgtct caaagtctgc atattttggc tatttccatt cagtgatgtg      2940
     ctatggaata atcttttggg gcaactcacc actttcaaaa aaaaaaaaaa attgtaagcc      3000
     agaaaaaagt agtccgaatt ctatgtggtg ttcctccaag aacctcatgt cgcaatctct      3060
     ttaaacagtt aggtatatta accactactt cacaatatct tctctcactc atggatttca      3120
     cacttcgcaa ttcttctgaa tatgaaacaa atgaggcata ccatcattat aacacaagac      3180
     ggaaaggtga tatgcactgt gaacggaaaa atctgtctct ggtacaaaaa ggagtaaagt      3240
     atgcaagtac aaaaatcttt aactcactcc cgagtaagat aaagtgtcta aaaggaaaca      3300
     aaaacactat ttaaaaaaag ctaaaggaat tcctactgga aaaatgtttc tactctttag      3360
     atgaattctt caacagagat aatcagtagt aattcagatt tatggatttt atttgtgatc      3420
     acaactaatt tgcactaaaa cctctgtttt tgcagctcct tatgtatttg tatttttgct      3480
     tagttattgt atctgtttgt tttttatctc tcttggtatt tttgtaatgt attgttttct      3540
     atttttattg gtacttttgt attgtttttt gtctctattg tatctttgta ttgtatccac      3600
     ttgtaatcat tccaatccca tgtacaacat gtcttaatgg gttatattgt atgatataca      3660
     tattgtatat aaatttgact cgttccacat ccatgcgtat tcacgccata ctggatctat      3720
     ggaatatgta tctcaaataa ataaataaaa ataaat                                3756
//
ID   Daphne-33_LMi repbase;    DNA;    INV; 4810 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4810
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3405-3405 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           12..1466
FT                 /product="Daphne-33_LMi_1p"
FT                 /translation="MATGVNRECVIPINKQSNEVKKCLKCEQIGVYSDNMC
FT                 LVCHITEKIAVIHTNGKVKHYEEIACIATMSYNSDMNKPSDSRYCYCEKRA
FT                 YKGITCVKCKTVFHLNCANASTKWKIWLCAKCDQDDLNIKLKKDCRNEIIL
FT                 ALIEEIYMLKYQCDELMHIRAVQQTTMCSEKRQELSKRISIPKTSSCCKLC
FT                 KRCKKNVKNGVKCIKCFGLFHFRCGKVDPSFTQNTKLLMNWKCEECRSKSE
FT                 YVGLNEDAVCCSDSTTKTGKTSNENPSHSTPQTNPHNTSTGWNMPRPTSKN
FT                 IANLNVSNGPIPEHENRFSALTLVNIDSDSEVPIQRGHTPNKPAIKCSQES
FT                 NANVQRKHSLLVPNKIKIFSDSFGKGLAMKMKTDDTTDTFKIEGMVKPSAR
FT                 FRQVADGIEEECKNFXSKDCVVIIGGANDVYHNETAAATKALRDSLGKLTH
FT                 TNVIVAKIPHRYDLIEQSCVNTEIKRANELYDSICKHFKM"
FT   CDS           join(1805..2710,2608..2883,2835..3191,3243..3398,
FT                 3383..3628,3632..3880,3865..4548)
FT                 /product="Daphne-33_LMi_2p"
FT                 /translation="MLFHANVQSLRNKINEVQFWADQINSSILSINEHWLP
FT                 NTEIDLCVPYGYILATSYCRKNMAHGGVAIYIKENLNLQYSVIDLSRHCIE
FT                 GVFEATAVILHAQKIIIASVYCTPSSDEEVFIDKITALIKLFAKHKNHKIF
FT                 IAGDINIDIRETRKNVNHLINSLKALNCHCINEKPTRLDACLDNVISNVNC
FT                 NELKYDVIKLELSDHDGIWVRIESMNPDSTKQLVTYRLINESNTEQLKHKL
FT                 EIVDWSNTLHNIQNLDECFSTFLTIIKNAIDKHCPLITKRCTPSNKQKPQH
FT                 LKVVHPSSDKKCNRQTLPTHHQKMHSQQQAKTPTPKSGTSKLRQMRILLLL
FT                 LKNKCDRSEEARKHCVSLKKLYKHEIKSAKRKANDAYIIGSKTALKQPGTS
FT                 CIYHRIKNSSKAAWNIIKNEIHVGKGQTTVPIDCNTLNEYFINCASFNSPY
FT                 SENNSHNCSAALSLLMQQEQTTTKFSWSKITSANIIKSINKLKNSKTEDYY
FT                 GVSNSIMKGIALRPLTYERHKTFKQRPISIVPIISKVLENTIHMQIYHYFE
FT                 SNKLLCNSQYGFDLNCQQSQLSTIKAVECLLSDIYDGYEKSKLTCATLLDL
FT                 SKAFDSVTHDIMIKKLEHYGIIDKPLQLFESYLTNRVQLVKVNNQMSYLNK
FT                 ERNSTRSVLGPFLFIVYINDFSNHMPCNKVLYADDMTLITNGDNLQDVAEY
FT                 NEVVTEMSSDWCKANFLTINTTKTEKISSPKNFFTLKTFEQETKNVRLLGL
FT                 YVDPKLTWDRHTDNLCSKLARTLFLLHKLKYVVSKTLLISVYFAFFHSQLQ
FT                 YGILLWGNSVGSKTIFKWQKKAIRCILGLAPRQSCRNHFKDLKIMTLPSMY
FT                 IYSCLVYAKENIKKFHFRAEVHSHNTRHKSNIDLPYSRLTLKHKSHQLLSM
FT                 KFYNKLPKTVRDLPLNNFKHTIEEWFKCMPYYSTDEFLNSDIHNICNKLSL
FT                 RES"
XX
SQ   Sequence 4810 BP; 1854 A; 881 C; 824 G; 1248 T; 3 other;
     gctgcaccaa catggcgact ggtgtaaatc gcgagtgtgt tattccgatt aataaacaaa        60
     gtaatgaagt gaaaaagtgc ttgaagtgcg aacaaattgg tgtatatagt gacaatatgt       120
     gtttagtgtg ccatattact gagaaaatag ccgtaataca caccaatggc aaggtaaaac       180
     actatgaaga gattgcttgc atagcaacca tgtcctacaa cagtgatatg aacaaaccta       240
     gcgattccag atattgctac tgtgaaaaga gagcgtataa aggcataaca tgtgttaaat       300
     gcaagacagt atttcatcta aattgtgcaa acgcaagcac aaaatggaaa atctggctat       360
     gtgcaaaatg cgaccaagac gatctgaaca ttaaactcaa aaaggactgt agaaacgaaa       420
     ttattttggc attaatagag gaaatatata tgttaaaata tcagtgtgat gaactaatgc       480
     atatcagagc ggtacaacag actacaatgt gcagtgaaaa acgacaagag cttagtaaga       540
     gaatttcaat tcctaaaact tcgtcttgct gtaaactttg caaaaggtgc aagaaaaacg       600
     ttaaaaatgg tgtcaagtgc atcaaatgct ttggactatt tcattttaga tgtggaaaag       660
     tggacccatc ctttacacag aacacgaaat tgctgatgaa ctggaaatgt gaagaatgta       720
     gatcaaaatc cgaatatgta ggcctaaatg aagatgcagt atgctgtagt gattctacga       780
     caaaaacggg caagacaagc aatgaaaatc catcccattc cacgccacaa acaaatccac       840
     acaacaccag cacaggatgg aatatgcctc gaccaactag caagaatata gccaacttaa       900
     atgtgagtaa cggtccaatt cctgaacacg aaaatagatt ttcagcccta actcttgtaa       960
     acatcgatag tgattccgaa gtgccaatac aaagaggaca tactccaaac aaacctgcaa      1020
     taaaatgttc tcaagaatcc aatgcaaatg tacaacgaaa acatagtctg ctggtaccta      1080
     ataaaataaa aattttctca gacagtttcg gtaaagggtt ggccatgaaa atgaaaacag      1140
     atgacacaac agacacattt aaaattgagg gaatggtaaa acctagtgca agattcagac      1200
     aagttgcaga tggcatcgaa gaagaatgca agaacttcwc atcaaaagac tgtgtagtta      1260
     ttataggagg cgccaatgat gtgtatcaca atgaaacagc tgcagcaaca aaagcactta      1320
     gagactcact gggtaagcta acacatacaa atgtaatagt tgctaaaata cctcaccgtt      1380
     atgacctaat tgaacagtca tgtgtgaaca ctgaaataaa aagagcaaat gagctctatg      1440
     attcaatatg taaacatttc aaaatgtaac agtgattgat gtaaatgata ttttggtttg      1500
     tagccacacc accacagtac cccatattaa atcttgtcac tgcaataggg tctgscatac      1560
     cagacatggt caacacctaa atggcttagg aaaatcactt ctaagtgaaa aaaatacttg      1620
     agactctaaa taatagacta gtcaatgcca ataaaacaat acataggctc catttcaaag      1680
     aatcagtaca gggaaacttg ccacagtgac caaatctgac acaagttgga tttggtcaca      1740
     aaaacctcca ttgagcagaa aagaaaatgc agcagaaatt ccccctagta acaaaaatga      1800
     tttaatgcta tttcatgcca atgtacaatc cctaagaaat aagatcaatg aagtacagtt      1860
     ctgggcagac caaattaact ccagcatact gagtattaat gagcactggc taccaaacac      1920
     agaaattgat ttatgtgtac cctatggcta catattagcc acctcctatt gcagaaaaaa      1980
     tatggcacat ggtggagtgg caatttatat aaaagaaaac ctcaatttgc agtattcagt      2040
     gatagactta agcaggcact gcatagaagg tgtttttgaa gcaacagcag taatacttca      2100
     tgcacaaaaa attattattg cttctgttta ctgcacacca tcctctgatg aagaagtttt      2160
     tatagataaa ataactgcct taatcaagct atttgctaaa cacaaaaatc acaaaatttt      2220
     tattgcagga gacattaaca tagacataag agaaacaaga aaaaatgtaa atcacttgat      2280
     aaattctctg aaagcactka actgtcactg tataaatgaa aaacctacta gactagatgc      2340
     ttgccttgac aatgtaatta gtaatgtaaa ttgtaatgaa ctgaagtatg atgtgattaa      2400
     gttggagcta tctgatcatg atgggatatg ggttagaata gaaagtatga atcctgacag      2460
     caccaaacag ctagtcacat acagattaat aaatgagagc aatactgagc aattaaaaca      2520
     caagttggaa atagtagatt ggtcaaatac actgcacaac atacaaaatc ttgatgaatg      2580
     cttctcaaca tttttaacta taattaaaaa tgcaatagac aaacattgcc cactcatcac      2640
     caaaagatgc actcccagca acaagcaaaa accccaacac ctaaaagtgg tacatccaag      2700
     ctcagacaaa tgagaatatt gctgctgttg cttaaaaata agtgtgatag aagtgaggaa      2760
     gccagaaaac attgtgtgtc ccttaagaag ttgtacaaac atgaaataaa gtcagctaaa      2820
     cgtaaagcaa atgatgcata tatcatagga tcaaaaacag ctctaaagca gcctggaaca      2880
     tcataaaaaa tgaaatccat gtaggtaaag ggcaaaccac agtccctata gattgcaata      2940
     cccttaatga atactttata aactgtgcta gctttaattc cccatacagt gaaaacaatt      3000
     ctcacaattg ctcagctgcc ctctctttgc tcatgcaaca agaacaaaca acaacaaaat      3060
     tctcttggtc aaaaatcacc tcagcgaaca taatcaaatc tataaacaaa ctaaaaaatt      3120
     caaaaacaga ggattactat ggggttagca acagcattat gaaaggcata gcccttaggc      3180
     cactaacata ctgaaggtat cccagattgc ctgaaaatga cagttactct cccaatccat      3240
     aagaaaggca caaaacattc aaacaaagac ccatatcaat agttcccatt atatctaaag      3300
     ttttggaaaa taccatccat atgcaaattt accattattt cgaaagcaat aaactcttgt      3360
     gtaatagcca gtatggcttt gatctcaact gtcaacaata aaagcagttg agtgtctcct      3420
     tagtgacata tatgatgggt acgagaagag taaactcact tgtgcaactc tgttagattt      3480
     aagtaaagcc tttgactctg tcacacatga tataatgata aaaaagttag aacattatgg      3540
     tataatagat aaaccgttac agctatttga gtcataccta accaacaggg tacaattagt      3600
     aaaagtaaac aaccaaatgt cgtacctttg aaataaagag aggaattcca caaggtccgt      3660
     gctaggacct ttcctgttca ttgtatatat taatgacttc tcaaatcaca tgccatgtaa      3720
     caaggtattg tatgccgatg acatgacact gattacaaat ggagataatc tacaggatgt      3780
     tgcagaatat aatgaagtag taactgaaat gagcagtgac tggtgcaagg caaactttct      3840
     aactataaac acaacaaaaa ctgaaaaaat ttcttcacct tgaaaacttt tgagcaagaa      3900
     acaaaaaatg tcagattatt gggactgtat gtagatccaa aactcacatg ggatagacat      3960
     acagataact tgtgcagcaa gcttgcccgt actctctttc tgctacacaa gctaaaatat      4020
     gtagtcagta aaactttact gatctcagta tactttgctt ttttccactc acaactccaa      4080
     tatggaattc tattatgggg taactctgtg ggctctaaaa ccatcttcaa atggcagaaa      4140
     aaggcaatta gatgtatttt aggcctagca cctagacaaa gctgtagaaa tcatttcaaa      4200
     gacctgaaaa taatgacact tcccagtatg tacatctaca gttgcctggt atatgccaaa      4260
     gaaaacatta aaaaatttca ttttagagct gaagtgcatt cccacaatac acggcataag      4320
     agcaacatag accttccgta ctcaaggctc acattgaaac ataagagtca tcagttgctt      4380
     agtatgaaat tctacaataa actccccaag acagtaagag atctgccact gaataatttt      4440
     aagcatacca tagaagagtg gttcaaatgt atgccatatt actcaactga tgagttccta      4500
     aacagcgaca tacataatat ttgcaataag ctatcattac gagaatcatg aagtatgcct      4560
     gtatgtgtgt gacagcactg tccacatgaa aatataaaaa taaatgaata aataaaaaaa      4620
     gcatgtattg tactattgtg aaaattgtaa tgtattatta atacttgtat cattgtatta      4680
     acattgtacg attatattaa gatgtatttt ttaaaatcat atcttctatt atgcaataag      4740
     cacactgacg aagccaattg tatggagaac atattgaaag gctaataaag attctattct      4800
     attctatcct                                                             4810
//
ID   Daphne-34_LMi repbase;    DNA;    INV; 4408 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4408
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3406-3406 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           282..881
FT                 /product="Daphne-34_LMi_1p"
FT                 /translation="MKCIELERKCKILENSSTGTDSLEADKNECFETFSSC
FT                 VTKKRAASVKQDKYISGKNLVTVVNKKQCSKNVENRTGGLKSVCKSDLPKQ
FT                 YAKNNFATTQNKLQQRREVKIFGDSHARNISNIVSNSAKKVTSVSAIVKPG
FT                 AKFGNVTSSIENECAKSTKNDCVVLIAGSNDVYHNEASAFIKKLIVILQLL
FT                 TTTNVIVQMC"
FT   CDS           join(1372..2118,2109..3992)
FT                 /product="Daphne-34_LMi_2p"
FT                 /translation="MKQNSGQLSFPDCSLFANFCRRQFSYGGSAIFVKDHI
FT                 KFCKVGLHKHVELSVEKDFELSLIKLPELNYIIINIXRAPSGNIHTFMTKL
FT                 EVLLNSVSSLNMKIILCGDFNIDLSENSNATHDMINMTKSFNMIPTIHSPT
FT                 RTTKNTASTIDQIFITDTSCRFTGRVLSLGYSDHDAQLLSIDIEKTEISSK
FT                 KVVQKRTFSDDNIRIFNSLLVKENWESVYAQSTVDGMFLSFHNTFLYYFNA
FT                 AFPLETKFNKILVNRKKKSWVTKGIRISSKRNRFLQYCCKKFSVSQDFSDY
FT                 CKAYKKTYRRVIKQAKLLSNDDFIRNSTNKMKAMWNVIKRETCSSTPKKEN
FT                 ISLSLNETKITDPHTVVNKFNEYFTSLAEDLVQTHCKIPIPTSTNRSNLTS
FT                 TSMYVYETNPDEIMNIIKTLNNKTSSGYDEVPDFILKVCAPLIAKPLSTIF
FT                 NHSLKAGIFPDALKIAKVSPLLKKGSPDLVSNYRPLSILSIFSKILEKLFY
FT                 DRLINFINKHAPISFQQHGFRKSMSTQTAIFELLDHTLNSIDQHNIAAGIF
FT                 LDLSKAFDVLDHKILLNKLEDRGVRGVAHSWLCSYLQNRRQKVSLQYDINE
FT                 QNMISNKVFLSDERSIKYGVPQGSVLGPLLFLIYVDDLVVHMNPHKTILFA
FT                 DDTSIVLTGSSPEYLQSVSDNAMKKLSDWFNNNGLIVNSGKTVCINFHLIP
FT                 SSSQKTIQVKFNNDVIENVIETKFLGVWVQQNLKWDTHIYKLSNKLSSLCY
FT                 ALRVLKSTTSKSTVMQAYHAQFHSLLRYGIIFWGNSPHSANVFKLQKRALR
FT                 IICGLKKMESCKCHFIKLNILNVPCLFIQETILFAREYLIKTGKLIKNKDI
FT                 HSHNTRGQSNIHQNFQGHHHIKKL"
XX
SQ   Sequence 4408 BP; 1652 A; 797 C; 699 G; 1259 T; 1 other;
     ctagttggtg aaaattgctc cgacagaagt gtcaaaaacg gtaaaatgtg gtaataattg        60
     caaactgtgc tacaaaaaag tcagaaaagt attcaatgta aatgttgtga atggtggttt       120
     cacgaaaact gctgcaaaat aaacgtaaaa ctgataacag tagactactt gtggacatgt       180
     gatacgtgtg taatggaaac gtgcgaaaaa agtatataaa cattatcaaa gacaaggatt       240
     caataattca aatactgcaa agtgatattc aagaactaca tatgaaatgt attgagttgg       300
     aacgcaagtg caaaattcta gagaacagca gtactggtac tgatagcttg gaagcggata       360
     aaaatgagtg tttcgaaact tttagttcgt gtgttaccaa aaaacgtgct gcatctgtaa       420
     aacaagataa atacatttca ggaaaaaatc ttgtgacagt agtaaacaag aaacagtgtt       480
     ctaaaaatgt agaaaacaga actggcggat taaaaagcgt gtgtaaaagt gatctcccaa       540
     aacaatatgc aaaaaacaat tttgccacca cacaaaataa gttgcaacag cggagggaag       600
     taaagatatt tggggacagt cacgcacgca atatatcaaa cattgtatca aactctgcta       660
     aaaaggtcac gagtgtttca gctattgtaa agcctggggc taaattcggt aacgtgacaa       720
     gcagcattga aaatgaatgt gccaaatcca ctaaaaatga ctgtgttgtt ctcattgcgg       780
     gttcaaacga cgtttaccac aatgaggcta gtgcatttat taaaaaactt atcgtgatct       840
     tgcagttgct aacgactaca aacgtaatag tacaaatgtg ctgatgcgat ttgatctgta       900
     agtcttggta aaccacgaaa tttggcgcac taacaaaaaa ttaaaacact tcttttctaa       960
     gtttcgaaat ttaaagcttc ttgactcagc aggtatgaaa aaacttgctt tacaaagcat      1020
     ggtcaacacc taaatcaatc aggcaagaac aacttgcaac cgatataaac aaaacttttg      1080
     acaaataata cacgaaagca gctgcaaaat aaaaagttat tggcctaatt tactcacccg      1140
     gaaaactagt gaatgggcca attcaaaatc aaaacattgc attattctgg gtaagtgctt      1200
     tgtcagaatt gccattacaa aagaattatc taaaccttaa ctgatgtgcc accaagccca      1260
     tcatttgtca tataatcaaa tatcgaatcc ctagaaataa gattacaatg cttgatgttc      1320
     tacttcaatc tcaaaaaatc cagatgtaat ttgtattact gaacactggt gatgaagcag      1380
     aactccggtc aactctcttt tccagattgc tcactatttg caaatttctg tcgtaggcaa      1440
     ttctcctatg gtggctctgc catttttgtt aaggaccaca taaaattctg caaggtaggc      1500
     ctacataaac atgttgaatt atcagtagaa aaggattttg agctttcatt gattaagcta      1560
     cctgaattaa actacataat cataaacata takagagcac caagtggtaa tattcacacc      1620
     tttatgacca aattagaagt tctgctaaac agtgtcagct cattaaacat gaaaataata      1680
     ctttgtggtg attttaacat tgatttatca gaaaatagta atgctacaca tgatatgata      1740
     aacatgacca aatccttcaa tatgatcccc acaatacact ctccaacaag aacaactaaa      1800
     aacacagctt caacaattga ccaaattttc ataactgaca ctagttgcag attcactgga      1860
     agagtactga gcttgggata tagcgaccac gatgcacagc tcctcagcat tgatatagaa      1920
     aaaactgaaa tcagctccaa aaaagtagtt cagaaaagaa ccttttctga tgacaatatt      1980
     aggatattta attccctatt agtcaaggaa aattgggaaa gtgtttatgc acaaagcact      2040
     gttgatggta tgtttttaag ctttcataac accttccttt actattttaa tgcagcattt      2100
     cctcttgaaa caaaattcta gtcaacagaa aaaagaaatc atgggtgaca aaaggaatca      2160
     gaatctctag caagaggaat agatttctgc aatactgctg caaaaaattc agtgtcagtc      2220
     aagatttttc tgactattgt aaagcctaca agaaaaccta tcgtagagtt attaaacagg      2280
     caaaactgtt atcaaatgac gatttcataa gaaattctac aaacaaaatg aaagccatgt      2340
     ggaatgtaat taaaagagaa acttgtagtt caacacctaa aaaagagaat atctccctat      2400
     cactaaatga aaccaagatc acagatccac atacagttgt aaacaaattc aatgaatatt      2460
     tcacctcatt agctgaagac ctcgttcaga cacactgcaa gataccaatc ccaacttcca      2520
     ccaatagatc aaacctcact agcacttcaa tgtatgttta tgaaacaaac cctgatgaaa      2580
     tcatgaacat aataaaaacg ttgaacaata aaacatctag tggctatgat gaagtacctg      2640
     acttcatatt aaaagtgtgt gctcccctca tagcaaaacc attgtcaacc atattcaacc      2700
     attcgttaaa agcaggcatc tttccagatg ctctcaaaat agctaaagtc tcaccactac      2760
     tgaagaaagg ttccccagat ctagtttcca attatcgacc attatccata ttaagtatct      2820
     tttcaaaaat cctagaaaaa cttttttatg acagacttat aaatttcata aataaacatg      2880
     ctcctatcag ttttcaacaa catggcttta gaaaatctat gtccactcaa acagcaattt      2940
     ttgagctgct agaccacaca ttaaactcaa tcgatcaaca taatatagct gcaggaatct      3000
     tcttagatct ttctaaagct tttgatgtac tagatcataa aatactgctt aataaactgg      3060
     aagatagagg agtaagaggt gtggcacata gctggctatg ctcttactta caaaaccgca      3120
     gacagaaagt atcacttcaa tatgatatta atgaacagaa catgatcagt aataaagttt      3180
     tcctctcaga tgaaagatca ataaaatacg gtgttccaca gggctctgtt ctaggaccat      3240
     tactttttct catttacgta gatgaccttg ttgttcacat gaacccacac aaaactattc      3300
     tgtttgctga tgatacgagc atagtgctga ctggatctag tcccgaatac cttcagtcag      3360
     tatcggataa cgccatgaag aaactttctg attggtttaa caataatggc ttaattgtta      3420
     atagtggaaa aactgtatgt ataaacttcc acttaattcc atcctcctcc cagaaaacta      3480
     tccaagtaaa atttaataat gatgtgattg aaaatgtaat tgaaacaaaa tttctgggtg      3540
     tatgggttca acagaattta aaatgggata cacatatata caagttatca aacaaactct      3600
     catcactgtg ctatgcatta agagtattga aatctacaac aagtaaatcc acagtaatgc      3660
     aagcgtacca tgcacagttc cattctctgc tccgctatgg aatcatcttc tggggaaatt      3720
     cacctcacag cgcaaatgta tttaaactac aaaaaagagc actaaggata atttgtggac      3780
     ttaaaaagat ggaatcatgt aaatgtcatt ttataaaact gaatattcta aatgtcccat      3840
     gcctattcat ccaagaaaca atcttattcg ccagggaata cctcataaaa actggaaaat      3900
     taatcaaaaa caaggatatt cacagtcata ataccagagg acaatcaaat atccatcaaa      3960
     actttcaagg acatcatcat atcaaaaaac tataattcat cttggtgtta aactacacaa      4020
     taaaattcca gatcaaataa agcttgcccc agagtcagta tttaaaaaga aactaaaggc      4080
     atttctgacg aagcactgct tctattcagt gcaagaattc ttggaaatta agaattgaaa      4140
     agtgtcaaat taaatatatt aacaattgtt tatgtctgtg ttattgtatt aaattttgag      4200
     tgactatttg tgtgattatg tgtaaaattt tcttgtgaca atccatttta tagtgatgca      4260
     ttcatcaatg agcagtttct ctattctcat tcaaatctca aaatttgaaa tgttagaaac      4320
     tttgtatatc tagattataa attacttgtc ctatatcatg tgtactatat gtacaatata      4380
     tgatccacag gataaataaa taaataaa                                         4408
//
ID   Daphne-35_LMi repbase;    DNA;    INV; 2958 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 19.12, Created)
DT   18-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2958
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3407-3407 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(947..1591,1561..1818,1740..2744)
FT                 /product="Daphne-35_LMi_1p"
FT                 /translation="MQEMYYAQRETKTKEHIDMYKHSKYQYHKEIKRLKAE
FT                 KINLKIQNSDCISKTCWSLVNEIRDNXTKLKNNSNIQIXQNNTVITSPQDI
FT                 SNXFNDYFIDVVETDCCNTDKAPCGYQADNNPDSNKLPEVDVNDTLQLIRE
FT                 CKNKKSSGWDEFSPXLLKQCQHNLAYPLTHLINSVLKEGVFPDTLKLAIVK
FT                 PLYKKGDKHLVDNYRPLALTSVSVSTTCSNFCFSKLIEKLILKYMLDHYSK
FT                 ENILGDFQHGFRSGRSTMTAAIQFMMKALDKIDEGYQVAGVSWIFQRRLIG
FT                 LTMSFSCQNRLSSSRSFLDLSKAFDRVDHELLLSKLARDGINGKLMHLVTS
FT                 YLRNRSQCTAITHNNGDAIKIYTSRVRNIKFGVPQGSIIGPFLFICYVNDF
FT                 TSAFNNEKFITMYADDTSGLVWGTDTKDVGLEVKKFIDTAKTKFENDNLKV
FT                 NLQKTNIISFNVSDLQSCIDSHGSNTIGKVCSECKFLGISIDSKLLWIQQI
FT                 DNVCAKITSNLYVLRRIAPYVNIQTMRTMYFGLIHPFLSYGLLLWGCAAKT
FT                 HVDRVFKLQKRALRVMGKVDSRISCKSLFLDFKIMTVYSMYMYESIIKTVE
FT                 DKEYTLRNIEVHQHNTRQAQDFHILSRRLKKNCKQPIH"
XX
SQ   Sequence 2958 BP; 1096 A; 500 C; 488 G; 868 T; 6 other;
     tgacaatgca cacatgtacc tgaaaaacga gatctttctt ttctacatta taatgcagag        60
     ggactaggta ataagttgga catgtttgag cattatctgt tagacgttgc cctcacatac       120
     ttgttgttag tgaatgtcaa aaatctgctg aaaactacac ttgtttaaaa tccaaaacta       180
     cacactatct ggtttctatt gcgcacccgt catggtgtag ctatttacct taaaaaattc       240
     tttaatagaa tactacgaaa atataacttg ggtgaaagag tcttcttcag atcttcactt       300
     tgaaatagtt gttattaagt taaaattttt gtctgttgtg gcattataaa gatctccaaa       360
     cggaaatttt gaaattttcc ttaattccct tgattaagct ttatctaaat tagcttctaa       420
     tcaaaaatat gtcaatgttg tacttttagg ggacattaat atcaatacct tgttagattc       480
     tcaagaaagc aaatgcctca aggactgtat ttactcctat ggagcaaaag atttgttagg       540
     agatgtacca actagaataa ctccaaccag tgtaagctct atagatcatg ttatcaccaa       600
     ctgcgaaaat attattacag ctcatgtagt aaatggtcac atctcagacc atctaggcca       660
     actattagtt ctaaagggag atcctaacac caaaccaaag aaactctatg aatacaaaag       720
     aattctctct gttagcaaca ttaccaaact aagagagagt ttgagctatg aatcttggca       780
     ttctgtatta caagcccaag gtgtaaataa taaatggaat gtgttcctag atgtactatc       840
     tttccatcta aacaagacca ttcctatcag gaagataaat ataaacaaga acaataattc       900
     acgttccagw cctgcagaaw tagataattt taccagaaac taaaaaatgc aagaaatgta       960
     ttatgcacaa agagagacaa aaaccaagga gcacatagat atgtacaaac attctaagta      1020
     ccagtatcac aaggaaatca aaagattgaa ggctgaaaag atcaatttaa aaatccaaaa      1080
     ttcagattgc atctctaaga cctgctggtc attagtaaat gaaataagag ataacamcac      1140
     caaactaaaa aataatagca acatccagat awttcaaaac aatactgtca ttaccagtcc      1200
     tcaagatatt agtaacaktt ttaatgatta cttcatagat gttgtagaaa ctgactgctg      1260
     taatacagat aaagcacctt gtggatatca agctgataac aaccccgact ctaataaact      1320
     ccctgaagtg gatgtcaatg acacattgca gctcatcaga gaatgcaaaa acaaaaaatc      1380
     ttcaggatgg gatgaatttt ccccttwttt actgaaacag tgccaacaca atctggcata      1440
     tcctttgaca catctcataa atagtgtctt aaaagaagga gtgttccctg atacactaaa      1500
     attagctatt gtgaaacctc tgtacaaaaa aggtgataaa catctagtag acaactatag      1560
     accacttgct ctaacttctg tttcagtaag ctaattgaaa aattaatact taagtacatg      1620
     ttagatcatt atagcaaaga aaatatcctg ggagattttc agcatggctt caggagtggt      1680
     cgtagcacaa tgacagcagc aatacaattt atgatgaaag ctcttgataa aattgatgaa      1740
     ggctatcaag tagcaggagt ttcttggatc tttcaaaggc gtttgatagg gttgaccatg      1800
     agcttctcct gtcaaaatta gccagagatg gcatcaatgg aaaactcatg caccttgtta      1860
     cttcatattt aagaaacaga agccagtgta ctgcaatcac acacaataat ggagatgcaa      1920
     taaaaatata cacgtcaagg gtcagaaaca ttaaatttgg agtgccacag ggatcaataa      1980
     taggtccttt cttgtttatt tgttatgtca atgacttcac aagtgcattc aataatgaaa      2040
     aattcataac tatgtatgca gatgacactt caggccttgt ttggggaact gatacgaaag      2100
     atgtcggctt agaagtaaaa aagtttattg atactgcaaa gacaaaattt gaaaatgaca      2160
     atctaaaagt caacttgcaa aaaacaaata taatttcttt taatgtaagt gatttgcaaa      2220
     gctgtattga ttctcatggt agtaatacaa tagggaaagt ctgtagcgag tgtaaattct      2280
     taggcattag cattgacagt aaacttttat ggatccaaca aattgataat gtgtgtgcaa      2340
     aaataacatc caatctatat gtgttgagaa gaatagctcc atatgtaaac attcaaacta      2400
     tgagaactat gtatttcggc ctaatacacc cctttctttc atatggactt ctattatggg      2460
     gttgtgctgc caaaacccat gtagatagag ttttcaaact tcaaaagaga gcactgagag      2520
     taatgggcaa agtagattcc agaatttctt gcaagagctt gtttttagat tttaaaatta      2580
     tgactgttta ctctatgtat atgtatgaat caattataaa aactgtagaa gataaggaat      2640
     atacacttcg caatatcgaa gtccatcagc ataataccag acaagcacaa gattttcaca      2700
     tactaagtag gagactgaaa aaaaactgca aacagcccat acactaaagg ggcaaaatat      2760
     tataatgctc tgccaaaaga aataaagatg ttaacaggcg agaaattcaa aaaacattta      2820
     aaagcatggc tcattgaaca gtgtttatat agtttaccct tataaaacta tttgaaatct      2880
     ttgtattgta tacttatata ttcattgtaa taacaatgct atgcatgtgt attcatgttt      2940
     cagcaaataa atacaaat                                                    2958
//
ID   Daphne-36_LMi repbase;    DNA;    INV; 4688 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 20.01, Created)
DT   18-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4688
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 165-165 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           535..1680
FT                 /product="Daphne-36_LMi_1p"
FT                 /translation="MKMQLSTVIAENSRFEMLVSHLAKSPRKKSGKARKHF
FT                 LLSAKKANTTGTCLNANEEPIIESETLTHSPVSNITDSNPSTPQSSAXLVK
FT                 ETECGHENDIETTGTTFKSKRINNMECTVHDVAQDPSANRPTXSKTEQENI
FT                 STATPVRNNLEQINNDKDLTVCETAQDRCLNXISSNDSKTXVSNDQHSLYN
FT                 SLNTSDKSNTDTNWRDVHYRKTARCVNKQNTSTTAKQQTNNTHEITQKTXA
FT                 RPKMLYKTVLQKTVEKEIPIAQPQASATVPVRNSSTTGRKNLIIGTGDEQG
FT                 MLYGEKRAWFHLGKVKNGTTTENVIKFLEKIFPGYSNFQVEKLETKGMNNS
FT                 FKIGVDFHLKDKVMDTAIWPKNIVIRRFLFQRSTSAPIK"
FT   CDS           join(1617..3857,3761..4552)
FT                 /product="Daphne-36_LMi_2p"
FT                 /translation="MAKEHCNQAFFIPEIDQCPNKIDPDSENQVPRLLHRN
FT                 NNRDDSHMPLVIAFVNVQCLRTKIDFLSFFVEDVKPDVLCICEHWLTEAEG
FT                 DYYRYIEYLNVVNAWYRTTKIHGGVSVYANKNLSVKEIDLKSFSTDLDLEL
FT                 ASLVLTNIDLIIISVYHSPDGNFENFIAQMENCLSYLTRLKSKIALCGDFN
FT                 VHIGDRSIKERVFMNLINSYGLFVANRLPTRGDACLDTVITNLNTWDYNIN
FT                 VVEPMIADHSALVMEISMNGNNKLQPSTWHSSYTFSRRVIKEDRLNDLKTV
FT                 LSGVNWQQKIAELGASDSFECLFQTLKTKFDGLFPIIHKKDPAGKSKGRDK
FT                 PITAKMWYTPELDRLKGIVVMFRDCMKTAKDLPTKDLLHCKYSRAKRIYRK
FT                 EVEEAKKKYNEKFIKEAHNPCKAAWNLVNEHRKKPTSALNSCSPDAFNQYF
FT                 IRIVKNTVSEIPDSGLLLTSDIKNERCNSIVNWKEVHPKDIIKIVRSYKHS
FT                 ESADIYGMSCTVLKKIIPELAQPLAIVINRCLSSGVFPEFLKLARTVPVYK
FT                 KGDPCEVSSYRPISIIPILAKVMESVMKHQLQNYFEENRLFQDTQHGFRKG
FT                 KSTFTAALDLTRKIRQVFEDRESVALTLCDLSKAFDCISHKILLNKLNCYG
FT                 VGGAVLATLQSYLENRKQVVSVHGALSQEQKLEHGVPQGSVIGPLLFLIYV
FT                 NDMGCNNHMLQFADDTTLFAKGKTAAQALQATGTSSKTQKNGSSKIKHHSF
FT                 CQRKNCSTSSPSNRDLFENTKEWFIKNKMKLNEGKTQHLICSLSNIGCHEN
FT                 MEAVRLLGFMIDSKLTMNEHTVYVCSKLSRVIFLLRRLKGTLTDQYLVTVY
FT                 YALFHSHINYGLLLWGHAAGCKDVLMLQKKAVRIITSSKRLDHCKPIFKRL
FT                 GIMTIFSQYVFLCLISIKENQGEFSMRQDIHNHDTRNKRSIEIPSCRLTGT
FT                 QDSFPMVALKMFNSLPKEVQSLPPEPFKRKIAQDLKEHPLYSIGEFFNSDE
FT                 SDWTK"
XX
SQ   Sequence 4688 BP; 1712 A; 870 C; 918 G; 1178 T; 10 other;
     aatggcggaa agtgaagcaa acagattatg tgaagtgtgc aacaaattaa taaaacacac        60
     ggatataagt gtgatttgtg actgtggtgt gggaacttgt ttcacagtga ttgtgttgac       120
     cttacaaaca gtgaagttcg cttggtaaac agttcaaaag gacgaattaa gttctgccgt       180
     ggtgcatgtg aagtcatatt acacaatgga ccatcggaaa tagcataaac aacaaaacag       240
     caacgttctg taagtgcatc cagctacaga aacagtggaa atgtgaaggt aggtgacgaa       300
     ataaaaatca tttgtgagtg caaaagtgac gataacaaaa tcattaatgt gtgcaaaagt       360
     gacgacatac aagagaactc acaaaatcaa ccttgtaaac cacgtgkaat tgaactgctg       420
     gaaatagaaa agggtgcttm tcatgcaagc aatacwaaag aaaaactgaa attaagtggt       480
     gcaatcgaaa atttaacaaa aacagtagat caactagtaa aagacaattc aaaaatgaaa       540
     atgcaactca gtacagtgat cgctgaaaac tccagatttg aaatgctagt gtcacatctg       600
     gccaaatctc ctcgcaaaaa aagcggaaaa gcacgtaaac attttctgtt gagtgctaaa       660
     aaagccaaca caaccggtac atgtttaaac gcaaatgaag agccgattat tgagtctgaa       720
     acactaacac acagcccagt ttctaatatt acagattcga atccgagtac gccacagtct       780
     tctgcattmc ttgtaaaaga aaccgagtgt ggacacgaaa acgacattga aactaccggt       840
     acgacattca agtcaaaacg cataaataat atggagtgta cagtccatga tgtagcgcag       900
     gatccatctg cgaataggcc tactawttca aaaacagaac aagaaaacat ttcaactgcg       960
     acacctgtac gtaacaattt ggaacaaata aataatgata aagaccttac agtctgtgaa      1020
     acagcacagg atcgatgttt gaatkatatw tcttccaatg attcgaaaac tagwgtcagt      1080
     aacgatcaac atagtcttta caactctttg aatacttcag ataaatccaa tacagataca      1140
     aattggcgtg atgttcatta caggaaaact gctcgttgtg tgaataaaca aaatacgtcc      1200
     actacagcaa aacaacaaac caacaatacg cacgaaatta cacagaagac atwtgcacga      1260
     ccaaaaatgc tgtacaaaac tgtgctccag aaaactgtag agaaagaaat accaatagcc      1320
     caaccacaag cttctgccac agtgcctgtc agaaattcaa gtaccacagg aagaaaaaat      1380
     ctgataatag gcactggtga tgagcaagga atgctatatg gagagaaaag agcatggttc      1440
     catttaggaa aagtgaaaaa tggtacaaca actgaaaatg taatcaaatt tctagagaaa      1500
     atctttccag gatacagcaa ctttcaagtt gagaaactag aaacaaaggg tatgaacaat      1560
     agcttcaaga ttggtgttga cttccatcta aaggacaagg taatggacac tgctatatgg      1620
     ccaaagaaca ttgtaatcag gcgtttttta ttccagagat cgaccagtgc cccaataaaa      1680
     tagaccctga cagtgaaaac caggtcccca gattattaca cagaaataac aatagagatg      1740
     acagtcatat gcctttagtt attgcatttg tcaatgtgca gtgtttaaga accaaaatag      1800
     actttttatc attctttgta gaagacgtta aaccagatgt cttatgtatc tgtgagcact      1860
     ggttgactga agcagaaggt gactattaca gatatattga atatttgaat gtggtaaatg      1920
     catggtatcg aacaactaaa attcatggtg gcgtatctgt gtatgcaaac aaaaatctta      1980
     gtgtaaagga aatagatcta aaaagcttct ctacagacct agatcttgaa ttggcttcac      2040
     tagtcttaac aaatattgat ctcattatta tctctgtgta ccactcacca gacggtaatt      2100
     ttgaaaactt tattgcacaa atggagaact gtttgtctta cctaacacgc cttaaatcta      2160
     aaattgcatt atgtggtgac ttcaatgtgc atataggtga tagaagtatc aaagagagag      2220
     tcttcatgaa cttaataaac agctatggac tatttgtagc aaaccgactc ccaacaagag      2280
     gtgatgcctg tctagataca gttatcacca acctaaatac ctgggattat aatatcaatg      2340
     tagttgaacc aatgattgca gaccacagtg cattggtaat ggaaatcagt atgaatggca      2400
     acaataaact acaaccaagc acatggcact caagctacac attcagtaga agggttatca      2460
     aagaagacag attaaatgac cttaaaaccg tcctgtctgg tgtgaactgg cagcagaaaa      2520
     ttgcagaact gggagccagt gactcatttg aatgtctgtt ccaaacatta aaaacaaaat      2580
     ttgatggttt gtttccaata atccacaaga aggatcctgc aggcaaatca aaaggaaggg      2640
     acaaacctat aacagcgaag atgtggtata ctcctgagct agacagatta aaaggcattg      2700
     tagtaatgtt cagggactgt atgaagacag ctaaagatct tccaactaaa gatctgcttc      2760
     actgtaaata ctcaagagct aagagaattt acagaaagga agtggaggaa gcaaaaaaga      2820
     aatataatga gaagttcatc aaagaggctc acaatccatg taaagcagct tggaatctag      2880
     taaatgagca caggaagaag cctacttctg ccttaaattc ctgtagtcct gatgccttca      2940
     atcagtactt cattaggata gtgaagaata ctgtcagtga aatcccagac tcaggcttac      3000
     ttctcacaag tgatataaaa aatgaacgct gtaacagtat tgtaaactgg aaggaagtgc      3060
     accctaagga cataataaaa atagtgagat catataagca ttcagagagt gcagatatct      3120
     atggcatgtc ttgcacagtg ctaaagaaaa taattccaga gcttgcccaa ccactagcca      3180
     tagtaattaa cagatgttta tcctctggtg tctttccaga attcctgaaa ttggcaagga      3240
     cagtaccagt ctacaaaaaa ggtgatccat gtgaagtgtc cagctacaga cccatttcaa      3300
     taatccccat cctagctaaa gttatggagt ctgtaatgaa acatcagttg caaaattatt      3360
     ttgaagaaaa taggctcttc caggacacac agcatggttt tcgcaaggga aagtcgacat      3420
     ttacggcagc actggacttg actagaaaga taagacaggt atttgaagat agagaaagtg      3480
     tggcactgac actctgtgac ctcagcaagg catttgactg catctcacac aagatactcc      3540
     tcaataaatt aaactgttat ggtgttggag gtgctgttct ggcaactctc caatcttatc      3600
     tggaaaaccg aaagcaggtg gtgtcagtwc atggagcctt atcacaagaa caaaagttgg      3660
     aacatggcgt accccaaggg tccgtcatag gtcctctcct gttcctaata tatgtaaatg      3720
     atatgggctg taacaaccac atgttacagt ttgctgatga caccactctt tttgccaaag      3780
     gaaaaactgc agcacaagct ctccaagcaa cagggacctc ttcgaaaaca caaaagaatg      3840
     gttcatcaaa aataaaatga aactgaatga aggaaaaaca cagcatctta tatgcagcct      3900
     tagcaacatt ggctgtcacg agaatatgga ggctgttaga cttctaggct tcatgattga      3960
     cagcaaactt acaatgaatg aacacacagt gtatgtatgc tccaagcttt cccgtgtaat      4020
     attccttctg agaaggctta aaggtacatt aactgaccaa taccttgtaa cagtgtatta      4080
     tgcactattt catagccata ttaattatgg cctactgcta tggggacatg ctgcaggttg      4140
     taaagatgtg ttaatgctac aaaaaaaggc tgtcagaata attacatcaa gcaaaagatt      4200
     ggaccactgc aagccaatat tcaaacggtt aggtattatg acgatcttca gccagtatgt      4260
     gtttttatgc ctcatcagca taaaagaaaa ccaaggggag ttcagcatga ggcaagatat      4320
     acataaccat gacacccgta acaagaggag cattgaaata ccaagctgtc gtctgactgg      4380
     aacacaagac agttttccaa tggttgcact gaaaatgttt aactcgctgc caaaagaagt      4440
     gcaatccctg ccaccagaac cattcaaaag gaaaattgca caggacctga aagagcaccc      4500
     actatactca attggtgaat ttttcaacag tgatgaaagt gactggacaa aatgataatg      4560
     tttatgttgt atatgtccaa attgtaaact tttttctttt atatatgtat atgtatgtat      4620
     ataatcttga cgcagtctgt ccagtcatga ctggtaaacg acacagaaat agtaataaag      4680
     taataata                                                               4688
//
ID   Daphne-37_LMi repbase;    DNA;    INV; 4390 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 20.01, Created)
DT   18-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4390
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 166-166 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(546..662,610..714,718..1056,933..1268,
FT                 1246..1500,1470..2192,2156..3130,3042..4055)
FT                 /product="Daphne-37_LMi_1p"
FT                 /translation="MYIFSDSHGRGIASIMQTMQMKFKVTGITKPGAPLCI
FT                 ITNSKLLALPNLVPLYVLLHKTDNLKQISHVSNMWQSNHQGGFQNVMFVEA
FT                 TSSVRTISPNMVCTGIIMAKQFCARKYDNINSQRQEIHSPIPLSLVKEKEV
FT                 TSHTQNEEKEQETSLSSPKKESPLLTLKRKDNWKRSVQKEKKNHHPVLRKR
FT                 TRNITVFPQKRITIAHLEKKGQLEKKRAEREEESSSCSIEEVLSLSAPEEE
FT                 TFSSAEKLPAKLRRGERTKKDIPLKNQDFFIPAAGEKTTRYKLDLRKTKVV
FT                 PRDQLHKFQGISCTNSIGQNVMFLHINVQSLKYKINELQFWLENLNCSILS
FT                 VNEHWLNCEELKLYVPFGFDLASSYYRTNVEHGGVSMLKIMTWWSVYVKNN
FT                 VNLIYEVTDVSELCIEAKFEAAAIKFPKQEIIVGSVYRPPKHNESLFVENL
FT                 EKLILLLLKHKNYRIVIFGDINIDIRFKNRNVNHLLNMLRSLNFYCINTKP
FT                 TRQAACLDNIICNFHLNKTDFDTISLCISDHDGLWLRQTLNYKILETSTEH
FT                 RIIRPINDSKLNQLISKLNIVKWDEIITNVDANEATNRFLLLLAELFETCC
FT                 PKHYRKSVKQRQCSKPQNLKKTGILHITTKSKKNWYTPHLNRIRILMLLYH
FT                 DKAKHNNADKEMYMKIKKLYRSEIKAAKCKANDAYILNSTNKCKAAWEIIK
FT                 TEMNYDHKVYQIPISPNTLNEHFVGPHSDSSTMQDVRKAEALLPETSSNLT
FT                 NNFCWSRVTEKEVYESVAKLSNSRAEDYYGLSNFVIKSVRKQIVKPLTKII
FT                 NKILEGGHYPECLKISVVKPVYKKGEVTSPENYRPISLIPIISKIIEYCMH
FT                 KQMYQYFETNNILSASQYGFRSRLSTTKAVESIVSKIHSSFEKKEIVCATL
FT                 LDLRKAFDMVSHNILIKKTPALWSERECYMPDGVLLGEQETVSQDKKKLQH
FT                 YGVRGNAICLMESYLENRKQLVKINNESSECLPVLKGVPQGSVLGPFLFIV
FT                 YINDLPTVVPCDAVLYADDTTLITCDTNLENVQHNMAVAMEKCNTWFEANV
FT                 LQKNDSKTEEIVFNLTAPSQDNKTVKLLGFHIDQKLNWDTHLDKLCSRLAR
FT                 VLHLLYKLRSSVSKELLLYAYSAFFHSHLDYGIILWGNSVGSKTVFKWQKK
FT                 AIRCIAGLSPRDSCRGYYKELNIMTVPSLYIYNCLVYVKENLNNYDLRMTI
FT                 HDHSTRSGHTIDVPYARLAKTHNCYKYLGLLYFNKLPKEAYTVPVDQFKNT
FT                 IVKWFKSKVFYSAQEFLECGTKDLNFL"
XX
SQ   Sequence 4390 BP; 1653 A; 745 C; 783 G; 1209 T; 0 other;
     tggcggcctg tatagatgta ctaataagtg gctctgtgaa aaacgattat gttgtaaata        60
     taaagtgtat tttgtgcagt gaaaatgttc tcagtggcat taggctgtgt tcagtgactc       120
     aaaagtgggt acatacgaag tgcatagcat attttgacac tataaacaca aaatgtaatt       180
     gtggcgtaat tcattgtgat ttgcaattgg tagctttagc aaaatatgat gctgagcggg       240
     aagaaaatgt gctatttacg atagaacatg acatattgat cgttaaaaag tactcaaaca       300
     acttggaaac attggcaata actcttaacg aagaacaaaa cacgaaagag catccattta       360
     ttaggcctaa atggagctgg tgttcgaaac agaacgagaa agaaaaacat cttggaaaaa       420
     caaatgcttt agcagtagaa gcagttgcgc ctaaacaagc aaaaacaaga agtatttcga       480
     agaaacaaga aaaagcaaag ctcctacaaa atgaatccat caacacagaa aaagagaagg       540
     aagagatgta catattttca gatagccatg gaaggggcat agcgagcatt atgcaaacca       600
     tgcaaatgaa attcaaagtt actggcatta ccaaacctgg tgcccctcta tgtattatta       660
     cataaaacag ataacttaaa acagatctca cacgtatcca atatgtggca gtcatgaaac       720
     caccaaggcg gatttcaaaa tgtcatgttt gttgaagcta caagctcagt gagaaccatt       780
     tcaccaaaca tggtctgcac aggaataatt atggcaaagc agttttgtgc aaggaaatat       840
     gacaacatta acagccaaag acaagaaatc cacagcccaa tcccactgtc attagtgaaa       900
     gaaaaagaag tgacatccca tactcaaaat gaagaaaaag aacaagaaac atcactgtct       960
     tcccccaaaa aagaatcacc attgctcacc ttgaaaagaa aggacaattg gaaaagaagc      1020
     gtgcagaaag agaagaagaa tcatcatcct gttctataga agaagtcctg tcactgtctg      1080
     caccagaaga agaaacattc tcatcagcag agaaactacc agcaaaactg aggagaggag      1140
     aaagaaccaa gaaagacata cctctgaaga accaagattt ttttatacca gcagctgggg      1200
     aaaaaacaac aaggtacaaa ctggatctga ggaagacaaa agtagttcca agggatcagc      1260
     tgcacaaata gcataggaca aaatgtaatg tttttgcaca ttaatgtgca gtctcttaaa      1320
     tataaaatta atgaacttca attctggttg gaaaacttaa actgcagtat tctgtcagta      1380
     aatgaacatt ggcttaattg tgaagaactc aaattatatg taccatttgg ttttgactta      1440
     gcaagtagct attatagaac aaatgttgaa catggtggag tgtctatgtt aaaaataatg      1500
     tgaatttaat atatgaagtt acagatgtaa gtgaactgtg catagaggca aaatttgaag      1560
     ctgcagccat aaaatttcca aaacaggaaa ttattgtagg atcagtatac cgtccaccta      1620
     aacacaatga aagtttattt gtggaaaacc tggagaaatt gatacttttg ttacttaaac      1680
     acaaaaatta caggatagta atatttggtg acataaatat agacattagg tttaagaata      1740
     gaaatgttaa ccatttgcta aacatgttaa gatctctcaa cttctactgc ataaatacca      1800
     aacccacaag gcaggctgca tgcttagata atataatatg taattttcat ttaaacaaaa      1860
     ctgattttga cacaattagt ctttgcattt ctgatcatga tgggctatgg ctcagacaga      1920
     ctcttaacta taaaatactt gaaacctcca ctgaacacag aataataaga ccaattaatg      1980
     actcaaagct aaaccagttg ataagtaaac tgaatattgt aaaatgggat gaaataataa      2040
     ctaatgtaga tgcaaatgaa gcaaccaata gatttctact cctattagct gaactttttg      2100
     aaacatgttg tcctaaacac tacaggaaat cagtgaagca gagacaatgc agtaaaccac      2160
     aaaatctaaa aaaaactggt atactccaca tttaaacaga ataagaattc tgatgctgct      2220
     atatcatgat aaggcaaagc ataataatgc tgacaaggag atgtacatga aaattaaaaa      2280
     gctttacagg tctgaaatca aggcagcaaa gtgtaaagct aatgatgcat atatattgaa      2340
     ctcaacaaat aaatgcaaag ctgcatggga aattatcaaa acagaaatga attatgatca      2400
     taaagtgtac cagataccta tttcacccaa cacattaaat gaacattttg ttggtccaca      2460
     ttcagatagc agtacaatgc aggatgtgag gaaggcagag gcattactgc cagaaacaag      2520
     cagtaatctc acaaacaact tttgctggtc tcgtgtaaca gagaaagagg tctatgaatc      2580
     tgtagcaaag ctcagtaatt ctagagcaga ggattactat ggcctctcaa attttgttat      2640
     taaatctgtc agaaaacaaa ttgtaaagcc actaactaaa ataatcaata agatcttaga      2700
     aggaggccac tatccagagt gtttaaaaat atctgttgtc aaaccagtat ataagaaagg      2760
     tgaagtaaca tctccagaga actatcgacc aatatcgctt atacctataa tatcaaaaat      2820
     aattgagtac tgcatgcaca aacagatgta tcaatacttt gaaactaata atatacttag      2880
     tgcctcacaa tatggcttca gatccaggct ctctacaacc aaagcagttg agagtattgt      2940
     atcaaaaata cacagttctt ttgaaaagaa agagattgtt tgtgcaacat tgttggacct      3000
     caggaaagca tttgatatgg tgtcccataa tattcttata aaaaaaactc cagcactatg      3060
     gagtgagagg gaatgctata tgcctgatgg agtcctactt ggagaacagg aaacagttag      3120
     tcaagataaa taatgaatcg tcagaatgtc ttccagttct aaagggtgta ccccaaggat      3180
     ctgttctagg gcctttcctt ttcattgttt atattaatga tttacctaca gttgtgccat      3240
     gtgatgcagt gctttatgca gatgacacaa ctctcatcac atgtgacacc aatcttgaaa      3300
     atgtgcagca caacatggca gtagcaatgg agaaatgcaa tacttggttt gaagccaatg      3360
     tcctgcagaa aaatgacagt aaaactgaag aaattgtatt caatctcact gctcctagtc      3420
     aagacaacaa aactgtcaaa ctattaggat ttcacataga tcaaaagctt aactgggata      3480
     cccacttaga taaactttgc agtagactag cccgtgtcct ccatctgcta tacaaactga      3540
     ggagtagtgt cagcaaagaa cttctattat atgcatactc tgcattcttc cattctcacc      3600
     tggactacgg aataatttta tggggtaatt ctgtaggctc aaaaacagtt ttcaaatggc      3660
     agaagaaagc tatcaggtgt attgcaggac ttagcccacg tgactcatgt agaggctact      3720
     acaaagaatt aaacatcatg acagtaccca gcctgtatat atacaattgc ctagtatatg      3780
     tcaaagaaaa tttaaataac tatgatctaa gaatgacaat tcatgaccac agcacaagaa      3840
     gtggacatac aattgatgtg ccatatgcta gactggcaaa gacgcacaat tgttacaaat      3900
     acttaggact cctctacttc aataaattac caaaagaggc atacacagtg ccagtagatc      3960
     aatttaagaa tactattgtg aaatggttta aaagcaaggt attttattct gcacaagagt      4020
     ttcttgaatg tgggacaaaa gacttaaatt tcttataata ataaattaca aataaaaagt      4080
     gttgtttatt ttataactat gtacacagta tggtactata actttgttac tgtcttgaac      4140
     acattgtaat acatctgtat gtttattgtc tgatatctat ttatggtagt gtacatatct      4200
     gataactata atgtaattgt ttattattct tgacattcat ttcatattat tttcttctat      4260
     cttatgggat tttctaagtc atttattgtt gctattttgt tttatcatta ttactatttt      4320
     atctaacctt gacgacaccg attgcatgta aaaatgctca aaggtgaata aagcatctaa      4380
     tctaatctta                                                             4390
//
ID   Daphne-38_LMi repbase;    DNA;    INV; 4266 BP.
XX
AC   .
XX
DT   18-APR-2014 (Rel. 20.01, Created)
DT   18-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4266
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 167-167 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2277..2654,2632..3585)
FT                 /product="Daphne-38_LMi_2p"
FT                 /translation="LSKRGYGPPERKWVIQNKTNAHIPCYGQEVKKIITEL
FT                 PNKNSSGFDDISTKVLKYCHNAICVILCHIFNESFKQGIVPDRMKYAEVKP
FT                 LFKKGERTDPSNYRPISLLTCFSKVLEKLMNKRIVEHLIRELWNTSNTHKA
FT                 LSQCQFGFQAGLSTDDAIFSFTNNVLESLNNRLSSVGIFCDLSKAFDCVNH
FT                 DILLSKAVYYGLGGNVGMWLRSYLTDRKQRVSLNQEDGTTASSDWGTVRTG
FT                 VPQGSVLGPLLFIIFINDLPHCTKAASKFTLFADDTSLLVEKPPINDLTTS
FT                 ANIVLEDLQKWFSCNGLTLNFKKTHYIHFHGSQKAQDELRLSCTNEDIHQV
FT                 YSSKFLGLHIDNKLNWSFHILDLRKRLSSASYTLRVIAATANTEAIMAAYF
FT                 GYFHSLLSYGIIFWGNQAMAKKVFVIQKRAIRIISGVNRKHSCRSLFKKT"
FT   CDS           join(408..758,724..1026,963..1148)
FT                 /product="Daphne-38_LMi_1p"
FT                 /translation="MIVLIMGGTNDVSKNQANDAIRHMKKALGKLNDTKVI
FT                 VVNIPQRHDLMEQSIVNLEVHKTNERIKTLCSKFQTVSLVNIANLERDLHT
FT                 SHGMHINKKGKMVVSKLIIEKIRCHFPQRLLRKLDVIFHKGEKKCIPMSGT
FT                 TAPKESVTQPTTAGKSGKLXKPAGQLXSPKSDXMAQQGXLSLNIIDLQXNF
FT                 CSLDVSNVCKTCPIVQSQSINQILILXYCMQDMSYSTEPVNKPNTNPLVLS
FT                 DTNVTPKNCNLEPVTNSKLSIFHQNIRSLXGKWSFWLST"
XX
SQ   Sequence 4266 BP; 1500 A; 794 C; 750 G; 1213 T; 9 other;
     ccgccattat tactcaaaaa gatatcagac tcttgatgag gtagtaaaac atgagagtgt        60
     caaccttgca aactagaaat aatcttttat gtagcaataa aattcacagt gataagtgca       120
     gaaaaacgcg ttttatactc gtgtgcaaac ggaaaaagtg aaagtaaaca aaccgttcaa       180
     ctacgtagtg accgtgtatg caaaaaacac ccgtaagcgc aaaagaagaa acgaggagca       240
     gcaagacaga agagccggat actaatacat ggagacagcc atgggcgtgg tatggcaaaa       300
     catcgcgaat ttacaagaga tttcgcactg tgggtcactt caacctggtg cccctctctc       360
     tgctgtggtg aagccgtgta tgcaggactg tgagccttta tcaacaaatg attgttctta       420
     tcatgggagg cacaaatgac gtatcaaaaa atcaagcaaa tgacgcaatc cgacatatga       480
     aaaaggcact gggtaagtta aatgacacta aagtaattgt tgttaacatt cctcagagac       540
     atgatctaat ggaacagtca attgtgaacc tggaagtaca taaaacaaac gaaaggatta       600
     aaacattatg tagcaaattt cagactgttt ccctagtaaa tatcgccaat ctggaaaggg       660
     acctgcacac ttctcatggt atgcacatta ataaaaaagg taaaatggtt gttagtaaat       720
     taattattga gaaaattaga tgtcattttc cacaaaggtg aaaagaagtg catacctatg       780
     agtggcacaa ccgccccaaa agaatcagtt acacaaccaa ccactgctgg maagtcaggg       840
     aaacttktaa agcctgctgg ccagcttkgt agccccaaat cagactwtat ggcccagcag       900
     ggawaactga gccttaatat catagaccta caacmkaatt tttgtagtct agatgtaagt       960
     aatgtatgca agacatgtcc tatagtacag agccagtcaa taaaccaaat actaatcctc      1020
     twgtattgag tgatactaat gtaaccccca aaaactgtaa tttagaacct gttacaaata      1080
     gtaaattaag tatattccac caaaatatta ggagccttas aggtaaatgg agcttttggc      1140
     tctcaacatg aaggaaaatc acgtgttatt gcaagcacac atactatgtt tcacagaaca      1200
     ccatgtgata tctgatgcct cagtagaggg ttatgaccta gctgatacat attgtagtta      1260
     aatagagaga aaggtggagc tgcagtatat gccaatgtgg gtgtagctca taaatctctt      1320
     gacctaaaaa cgtattgtaa agattttcat tttgaagcct gtgcctcaga attttgctga      1380
     caataggtgg acagtagggc tccagcagga aatagatttt tcttaaaaca gcttgaatca      1440
     gttttgctaa aaatatacac aaaggctaag cagttagtca ttataggtga cttcaatatt      1500
     aacttcctga cagacaacca gaaaaactga tttgaacacc attaaaaacc tttaatctaa      1560
     tccagttgtt gaattcctac ccgagtacag atacagtgaa gcctaattga caacatcttt      1620
     attgataagt ttattactgg ttgtatcact gtaaatcaaa ttatcaatgg ctgactgacc      1680
     atgatgggca gttgctcatt ttaatgacat acatgctggc accaaacaaa aacaagtctt      1740
     taagtccttt agaaccatca acatggaaac attagatgaa ttcaatcagc tcttgcagat      1800
     tgactggggc cagtttataa agaaagaaat gttaatacca aattcaacct attcacagat      1860
     gaattcatgt ctctgaagca tttttcacaa gaaaattttg aaaaaatccc cacactacca      1920
     agcccaaacc tggattacaa aagggataaa aactccatgt aaaacaaaaa gagaatatat      1980
     atttcacaaa gatgttctaa taatcctgaa atgaaagaac actatagatc atactgtaaa      2040
     atcttaaaaa agttatgaag tcctccaaaa ccctcaatta agtctgaaat agataactca      2100
     aacaataaaa taaaaactat ttggagtgtc attaaaagag agctgggaaa aaaagatgac      2160
     gctatatcca acattgaagt tacacatcat ggtagtttga ttaaagatac tactgcagtt      2220
     gcaagtgtct ttaatgagca ttttctaaca gcctctgaga aaattggatg cactagctca      2280
     gtaaaagagg ctatggacct cctgaaagga agtgggttat acaaaataaa acaaatgccc      2340
     atatcccctg ttatggtcag gaggtcaaaa agatcatcac tgaattgcca aataagaact      2400
     catctggttt tgatgatatt tccactaaag tactcaaata ctgtcacaat gccatttgtg      2460
     taatattatg ccacatattt aatgagtcct ttaaacaagg tattgtccca gacaggatga      2520
     agtatgctga ggtcaaacca ctatttaaga agggggaaag gactgatccc tcaaactacc      2580
     gccctatctc cctgttaaca tgtttctcca aagttcttga aaaacttatg aataagagaa      2640
     ttgtggaaca cctctaacac ccacaaggct cttagccaat gtcagtttgg attccaagca      2700
     ggcctatcaa ctgatgatgc catattttcc tttactaata atgttttaga atcattaaac      2760
     aataggttat cttcagttgg tattttttgt gacttgtcca aggccttcga ctgtgtgaac      2820
     catgacatac tcctgtcaaa agcagtctat tatggtttag gtggcaatgt gggaatgtgg      2880
     cttagatcat acctaactga tagaaagcag agggtatctc tgaaccagga agatggaaca      2940
     acagcctcat ctgactgggg aacagtaaga acaggagtgc cgcaaggttc ggtactagga      3000
     cccttgctct ttataatttt tattaatgac cttccacatt gtacaaaagc tgcttccaaa      3060
     tttactctct ttgccgatga tacttctctt ttagttgaaa aaccacctat caatgacctc      3120
     acaacatccg ccaatattgt gctcgaggat cttcagaagt ggttcagctg caatggcctg      3180
     actttaaatt ttaaaaagac ccattacatt catttccatg ggtctcagaa agctcaggat      3240
     gaattaaggc taagctgtac aaatgaagac atacatcaag tttactcttc taagtttttg      3300
     ggcctccata ttgacaataa actaaactgg tctttccata ttctggactt aagaaaaaga      3360
     ctcagctctg catcctatac ccttcgtgtt atagcagcaa ctgctaatac tgaagctatt      3420
     atggctgctt attttggtta ttttcattca ttgttgtcgt atggcataat attctggggt      3480
     aaccaagcaa tggcaaaaaa agtgtttgtc attcagaaaa gagcaatacg tattatcagt      3540
     ggagttaaca gaaaacattc ctgcagaagt ctttttaaaa aaacataaga ttttaacatt      3600
     gacatcacaa tatatactat cccttatgtg ctttttaatt aagaacctcc cttgtacaaa      3660
     actaatagtg tttatcatga tcacgacaca agatcaaaac atgacatgca tgttgacaga      3720
     aaaaacttga gtcttgtgca aaagggtgtt cactactcaa gcacgaagat atttaatgca      3780
     ctaccatcag acataaaaaa tctcactagt gtaacaccac aattcaaaag taagttgaaa      3840
     gaatatctgc tggaaaactg tttctactca cttgatgaat tctttaatgt aaatgcctct      3900
     acattgtaac tgatatgata caaatctgta agatttacca taaggactca gcaacttaag      3960
     acaataacct acatcagcac agttaatttg ctatgaataa tttgtaactc aataccagta      4020
     aaattatgtc ttttaatgtg aaataattgt aatttatttt aatacctttg tgtccttgta      4080
     tgtaatgtct ataaacatgt cattgtatgt atatgtatac aaacttgtaa ttattagcat      4140
     atgttgtttc tgtacatata tggaaattca actattgtac catttccttg taaaacctga      4200
     ctcgttccat atccgtgcaa ttctcttgca tatgggtcaa cggaacacga ataaataaat      4260
     aaataa                                                                 4266
//
ID   Daphne-39_LMi repbase;    DNA;    INV; 4293 BP.
XX
AC   .
XX
DT   20-APR-2014 (Rel. 20.01, Created)
DT   20-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-39_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4293
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 168-168 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(775..1305,1315..1503)
FT                 /product="Daphne-39_LMi_1p"
FT                 /translation="KDVNSDIQVTGIVKLGARTNRILEDISQHESMLQETD
FT                 CVVCITGSNDVAIGEADACVTGLKNFLDYNKTKNSIIVTIPQRHDLIYNSC
FT                 VNKEIRKTNIRIRQLCAVYEKCDIIDIGKLDREMHTKHGMHLNYKGKRFVG
FT                 EEVVRIIQGRIEISNRIGLISGASIDNSVPFLETVLSLNQTKHEDYWLKRE
FT                 QDKTITLLQVNICSITNKILELQHFCKLNECDVYVCQNIGLETIKSSFCS"
FT   CDS           join(1675..2328,2225..2956,2946..3320,3324..3545)
FT                 /product="Daphne-39_LMi_2p"
FT                 /translation="LVSLYRSPNGDVSIFLDNFELLMRKISKFKTNVAICG
FT                 DYNIEMGRSDEPISKIFSNVLRSLNLFCTNNKPTRGKACLDNIIVNFSSDF
FT                 YSVSITDELFADHNSILLKYHFKQSSNNNLPDINKPCPTWVRGQKEEYVQL
FT                 FTDRLRNVNWDFVYEFDVDETTVRTIFDNFFKTYTDLWHSCSPLKRNGNRP
FT                 KSKKLKWYTDELADIRQNMLVLYKVYKQKEMATGQSLKSLNGTLMNLPTSD
FT                 KICWCCIKYINNNYKCGTEEVDASYKAYLESKKHYKAKLRLAKQLACEKYI
FT                 EGATNKCKAAWHIITQEHTVTQTQDIVLEPEELNTYFTTSVNELKXKIAPT
FT                 NTSATGILADLTPKTHEFYWDIVTPADIVNTVSKFSNSRSMDCYWLSNYII
FT                 KRTIHVICKPLAFIINKCLEFGIFPDQLKISKVVPIYKKGEKHLPQNYRPV
FT                 SVVPIFSKIFEALIMHNLCTISTHFEKHDLLCNRQHGFRQGKNTTSAVLXI
FT                 VNQTLTAFENKXTVSLELCDLSKAFDCIPFDILLAKLQHYGVNGSSLAVIS
FT                 SYLHNRRQFVSVKDRRSSLQGSHLVCLRAQSLDHSFSLLQMIXHFVGPQSV
FT                 ICYADDTTIITTDQEMASLHQNSQDKLDLALNWFASNKLVCNPRKPTPTLG
FT                 LTKEIETKSVNC"
XX
SQ   Sequence 4293 BP; 1563 A; 755 C; 759 G; 1205 T; 11 other;
     gtttggctgc atgaaaagtg tgcacaagtt gtttaaaatt cataagtgac aatattcact        60
     ggtcgtgccg agactgctat ttagatgacg aaaacaggaa acttgaatct acaktaagtt       120
     cccaagaaga aattattaag atgctacaca gtacattaac actctaaaac aaaatcatca       180
     gtactgaatc aaaggacatc gcaaataaac atgagtggta tgaccataaa agaaaactat       240
     agtaatgtag ttaaaaaggg gacttctgtt aattgcagga atgaaatttc aaaattaggt       300
     gaatgagtga ctagcctaca aacaattatc agtggtttaa gaagtgaaat tataaacctt       360
     aaaagtgaaa accgcgattt acgttcgaaa ctgaatatgc gtgtaatttc gcattcaaaa       420
     caaaactctt gcaaagttgt acaagactct cctggaaaac acctggaaga ctgctaacaa       480
     aactagagtt cacgcgataa aatggaggca aaagctgtaa acatgttgag accggaaaat       540
     tacaacaaat ttgatgtcct ttgtacagat gcagaaagca gtaacgaact ctgcacacaa       600
     tcttatgttc cacatactgc cgacaacgac gaacagtata aacatgttcc aagataaaac       660
     aaagaatttc catctaagga cagcaacaaa aacaaaataa aaaatcacaa ataaaaaact       720
     gtaacgtgct tcttctagca gacagccacg gcaggaagct atcaggtgca ataaaaagac       780
     gttaactccg acattcaagt gactggaatt gtgaaactgg gagcaagaac gaacagaatt       840
     ttagaagaca tcagccagca tgaatcaatg ttacaagaga ctgattgtgt ggtgtgtata       900
     actggttcaa acgatgttgc cattggtgaa gcagacgcct gtgtaacagg cttgaagaat       960
     ttcttagact ataacaaaac gaagaattca attattgtca caattcctca aagacacgat      1020
     ttaatctata attcttgtgt caataaagaa atccggaaaa caaacatccg aatcaggcaa      1080
     ctctgtgcag tgtatgagaa atgtgacatt atagatattg gcaaacttga tcgtgaaatg      1140
     catactaaac atggcatgca tttaaattat aagggaaaac gttttgttgg tgaagaggtc      1200
     gtcagaataa ttcagggaag aatcgaaata agtaaccgaa taggactaat tagtggggcc      1260
     agcatagata attcagttcc ttttttagag actgtcttga gcctctagtc ttagaatcaa      1320
     acgaagcatg aagactattg gcttaagaga gagcaagata aaacaattac actcttgcaa      1380
     gttaacattt gctctattac aaataaaata ctagaactac aacatttttg taaattgaat      1440
     gagtgtgatg tatatgtgtg tcagaacatt ggcttagaga caatcaagtc gagtttttgt      1500
     tcctgatgac tacattcttg cggatttcat gtgtagaaag gaaaaaaaaa aatgtggggt      1560
     tgcaatattt gtcagacaca atataaaatt tttagaaata gatgtaagct catactcctc      1620
     tgaaattaaa tggagagttt agctgtgtaa gacttttaga ccagaatatt ataattagtt      1680
     agcctgtaca gatcaccaaa tggtgatgtc agtatatttc ttgataactt tgaactattg      1740
     atgagaaaaa tttctaagtt caaaacaaat gttgctatat gtggagatta taatatagaa      1800
     atgggacgtt cagatgaacc catctcaaaa atattttcca atgtactcag gtctttaaat      1860
     ttgttctgta ccaataacaa accaacacga ggcaaagctt gtttagataa tattatagtt      1920
     aatttttcaa gtgattttta tagtgttagc attacagatg aactctttgc agatcataat      1980
     tctatacttc tcaaatacca ttttaaacag tcaagtaaca ataatttgcc tgacatcaat      2040
     aagccatgcc cgacatgggt gaggggtcag aaagaggagt atgttcagct atttaccgac      2100
     agactaagaa atgtaaactg ggactttgta tacgagtttg atgtagatga aacaactgtt      2160
     agaactattt ttgataattt ctttaaaaca tatactgatt tatggcactc ttgctcacct      2220
     ctaaaaagaa atggcaacag gccaaagtct aaaaagctta aatggtacac tgatgaactt      2280
     gccgacatca gacaaaatat gctggtgctg tataaagtat ataaacaata attataaatg      2340
     tggcacagag gaggttgatg cttcgtataa agcttacctt gaaagtaaaa agcactataa      2400
     agcaaaactt agacttgcca aacaattagc ctgtgagaaa tatatagaag gagcaactaa      2460
     taaatgcaag gcagcttggc acattataac acaggagcac actgtcaccc aaacacaaga      2520
     tattgtgctk gaaccagagg aactaaatac ttactttact acctcagtaa atgaattaaa      2580
     atmaaaaatc gctcccacaa acacatctgc mactggtata cttgctgatc tgactcccaa      2640
     gacacacgag ttctattggg atattgttac accggcagac attgtaaaca ccgtatcaaa      2700
     attttcaaat tccagaagta tggactgcta ttggctatca aactacataa taaaaagaac      2760
     tatacatgtt atttgcaaac cacttgcttt cattattaat aaatgtttgg aattcggaat      2820
     cttcccagat caacttaaaa tttcaaaagt agtgccgata tacaaaaagg gtgaaaaaca      2880
     tctcccccag aactacagac cagtctctgt tgtcccaata ttttcaaaaa tatttgaggc      2940
     attaattatg cacaattagt acccattttg aaaaacatga tctcctctgt aatagacagc      3000
     atggttttcg acaagggaaa aatactactt ctgctgtcct tsagattgta aaccagacat      3060
     taactgcatt tgaaaacaag matacggtmt ctcttgagct atgtgacctg agtaaggcat      3120
     ttgactgcat mccmtttgac attttacttg ccaaactgca gcattatgga gtaaatggct      3180
     catcactagc agtaataagt tcctacttac acaacaggag acaatttgtg tcagttaaag      3240
     acagacgatc ctcactgcag gggtcacatc tggtgtgcct cagggctcag tccttggacc      3300
     attccttttc attgttgcaa taaatgatct kccactttgt tgggcctcag tcagttattt      3360
     gctatgcaga tgacacaact ataataacta ctgatcaaga aatggcaagc ttacaccaga      3420
     attcacagga caagctcgac ctagcactca actggtttgc atctaacaaa ttagtatgca      3480
     atccgagaaa accaacacct acgctgggac taactaaaga aatagaaaca aaatctgtaa      3540
     actgctaggc atatacattg attcaaaact gaactggsaa ccccacatca accacgtctg      3600
     caaaaagcta tctcggtgac attcctcata tggaaattag ctgacttagt gagtaagaat      3660
     tatctgagga cagctacttt ggtcttttcc agtctcacat atcttatggt ctgttactat      3720
     ggggacacgc ttctcatgta agtgatatat taatgataca aaaaaaggta gtacgaataa      3780
     tgtgtaaggt tggcctaagg aacactgccg tcctctgttc acaaaattga aaatattgac      3840
     agtgataaat ctttatatct atgttcactg atacatgtta agaacaacat aacagatttt      3900
     atactagaga cggtatacac catcatgaca ccagaagcaa aactagattg acattcctag      3960
     gcacagactg gacaaaaaca ggaaactccc ataaaataaa ctgtcttaaa ttctttaata      4020
     agttgccaca ttctgctttt accacaccct tcaataattt taaaaacaag ttgtacaact      4080
     ggttagctga gaacccattc tacagtatga gagaattttt tgatgtacgt aatattgaaa      4140
     ttgattttta atgtcttgtt ttaaaattat ataaatgtgt aatataaatt attcaactgt      4200
     aaacataatg taacattaat tgaatgtaat tgtaacttaa tgactgccta ttccactaca      4260
     tgtggtcaac ggcgaataaa gaatctgaat ctg                                   4293
//
ID   Daphne-3_BTa repbase;    DNA;    INV; 4886 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4886
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 622-622 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1790
FT                 /product="Daphne-3_BTa_1p"
FT                 /translation="MMISATITNTIKSFAGLSTANIPTETASPRNGAYALR
FT                 SNVNKELESDKKXSFSSNRPSPSPLSLSTAGRKTTRREKITSKPAPKVASV
FT                 TPNSQASPSAARNNSKKRNAVSSTKSLAPSTDGDTKTTASPTLSLRSLPLC
FT                 SSKRVKSTSSSKTKATTSNVIVNCNTSNPVTTSMSTQTSLELDLEVQRDAL
FT                 NNELIDTKNKLSSSLHENSMLIDEITILKEEIRVLNEKLHYVNKVEDTSNL
FT                 SKNSLTKKNKMLLDQIDTLKNDLSKVNSDNYSLQKANRGILKQLKSKKPKQ
FT                 SLKLEFSLRNTFIFKKFRNTGNSKAFQQVVLNVDRLNQLKEESAKARKGKK
FT                 KIIILGDSHSRNFAKHLRLNSTNFAIESYVHPGAGSNKILASANFPDLSKN
FT                 DCVLILSGSNDVYKISSRNHDSISAANHPIISFAARHKHTNVIVSAVPYRR
FT                 DKAPSDPMNQQIYDFNLSLFDLGQKYENCTFFNRMCFAIGNDYCKDGLHVK
FT                 DNFKRLLALELTSFLNFHLN"
FT   CDS           1760..4747
FT                 /product="Daphne-3_BTa_2p"
FT                 /translation="VDVIPQLSFKLNSSDNGNANFLRSEILTLENNRINNI
FT                 NSPKFQLLNLNIQSLHKIGKTHLLALEMGKLKSEPDIICLTETWFKPDSAI
FT                 PLSNYICADSKAREISRGGGSAIYVKPTIKYSRPQIFEAHSVEHHFEISAI
FT                 SIHKLNNIHLKKPWVILSIYRPPTGDFEVMLEKLEAVLSTLHEMNCHYSLS
FT                 GDFNIDFLDPRRKDVISLCNLLSEFNLRPIFCDEPSRVAKTSATLLDNCFS
FT                 SSRPIDSVTWDPGLSDHRGQIVSFPIDTESNYINNKRFKRHWSEEACLGLT
FT                 GQLHYFCSTFDPQLGNVNNTVEHFIRGLYSAIELCCPVRPVKSFSCRRLKN
FT                 DTLNSLSERKKEYHSLYKNTGLLKYKKLFNKTNKLLKKSLYREKRKNVERM
FT                 IKNSKNKSFTTWKIIKDQTPSTNNNSLIDAVRCDGVIVSDPAKIANVFNEH
FT                 LTSLHNTFPSNLAHSMALEMTKKSLKNPPPTFTFSQITLNELYSCVCSLKP
FT                 NKADTYGCIPPFFFRDYFSIIGEHLLVLINKCIVTGVFPHCLKSANVTPLF
FT                 KKGSRQDVSNYRPISVLSTVSKLFEKILFKQLLCHFESNNLLYDHQFGFRK
FT                 GLSTTHALYKLIDKVLTAFEKKLPVMSIHFDLTKAFDLLNHSLLLKKLHLY
FT                 GLSENALTLIASYLSDRNQRVKIDSVNGPILSSVLPLMTGVPQGSILGPLL
FT                 FIIFMNDLPFNVKYPILLFADDTSALVEGGDVILKAREVYDQASAWFNAND
FT                 LTVNQSKTQALIYSAGSCNAPSIDYCILGDSNSIRLENSVEFLGIQIDKGL
FT                 TWKEHTSKVICKLSRASWALRNLSRISTLQCCLAFYHAHVVSHMRYGLILW
FT                 GRSTGAEQVFMLQKKLVRIMFNMPWNAHCRPIFIEHRLFTLTSLYILDSLK
FT                 FAISNGLVSPSDLLPSHNYNSRHRDIKNVKVRLKLSEQDCKFSAIQIINAL
FT                 PWNVKKQLRDGDIRKFFNLLRDLLLSKAFYNLNEFLNSSVE"
XX
SQ   Sequence 4886 BP; 1570 A; 1014 C; 829 G; 1470 T; 3 other;
     ttttaacatc tagttactcg tcttaatctc ctctttaaga ctatgtgtga attttccgcg        60
     atttcaagtt agttcagtta cgacgtgttk tscgagctca atctagtacc ggagctatag       120
     cttgcaccac ttctaaagaa tctgaagaat gtgaggaatg ccaatagcgt aaccaataac       180
     gtaaacattc ctatcgaaag tcgattctat tgaagtctaa atacactacg tacacttaag       240
     gcatgatgat atcagcgacc atcactaata cgattaaatc gttcgctgga ttatcgacgg       300
     cgaatattcc gactgagaca gcgtcgccac gaaatggagc atatgcacta aggagcaacg       360
     tgaacaagga gttggagtct gataagaaaa scagtttcag ctctaacagg ccctcacctt       420
     ctccattgtc actctcaacc gctggccgaa agaccacaag gcgcgagaag ataacgtcca       480
     agccggcacc aaaggtagca tcagtgacac ctaacagtca agcctctccg agtgcagccc       540
     gcaataatag caagaaaaga aatgcggtct catctactaa gtctctggcc ccttcaactg       600
     acggtgatac aaaaacaact gcttcaccaa cgctttcatt acgaagtctt ccattgtgtt       660
     cttctaagcg ggtgaaatct acttcttctt ccaaaaccaa agcaacgact tcaaatgtaa       720
     tagtaaattg taatactagt aatcctgtca caacctcaat gagcacccaa actagtcttg       780
     agctcgatct agaagtccaa agggatgctt taaataatga acttatagat actaaaaata       840
     aattaagttc ttctttgcat gagaactcga tgttgattga tgagataaca attttaaaag       900
     aggagataag ggttttgaat gaaaaattac attatgtaaa taaagtagag gacacttcaa       960
     atctttcaaa aaacagctta accaaaaaga acaaaatgtt attagaccaa attgacacgc      1020
     ttaaaaatga cctaagcaag gtaaactccg acaactattc ccttcaaaaa gcaaatagag      1080
     gcatacttaa gcaattaaaa tcaaaaaagc caaaacagag tctaaaattg gagttcagct      1140
     tgagaaacac ttttatattt aaaaaattta ggaatacagg aaattcaaag gcgtttcaac      1200
     aggtagtcct taatgttgat agattaaatc aattaaagga agaaagtgct aaggcaagga      1260
     agggaaaaaa gaaaataatt atcctaggtg atagtcactc tagaaatttt gccaagcatt      1320
     tgcgcttaaa ctcaacaaac tttgccatag aatcatatgt acacccaggt gcgggttcaa      1380
     ataaaatact tgcaagtgca aactttcctg acctatccaa aaatgactgt gtactaatcc      1440
     tctcgggttc taatgacgtt tataagataa gtagcagaaa ccatgatagt ataagtgcag      1500
     ccaatcatcc tatcatttcc tttgcagcta ggcataaaca tacaaatgta attgtttctg      1560
     cggtacccta taggagggac aaagcaccct ctgatcctat gaatcaacaa atctatgatt      1620
     ttaatttaag tttatttgac ctaggacaaa agtatgaaaa ttgtaccttc ttcaatagga      1680
     tgtgttttgc tattgggaat gattattgta aggacggact tcatgtgaaa gataatttca      1740
     aacgcttgct ggcgcttgag ttgacgtcat tcctcaactt tcatttaaac taaactcctc      1800
     tgacaatgga aatgctaatt ttctgcgctc tgaaattttg actcttgaaa ataaccgtat      1860
     caacaatata aattcgccta aattccaatt acttaatcta aatattcaaa gcctccataa      1920
     aattggaaaa actcatcttc ttgctcttga gatgggcaaa ttaaagtccg agccggatat      1980
     tatctgcctt acagaaactt ggtttaagcc agatagcgct attcccctct ctaattacat      2040
     ttgcgctgac tccaaggcta gagaaatttc aagaggaggg gggtctgcaa tctatgtcaa      2100
     gccaactatt aagtattctc gtcctcaaat ttttgaagcc cattctgtag agcaccactt      2160
     tgaaatttcg gctatctcaa tacataaact taataatatt catcttaaaa agccttgggt      2220
     tattctatca atatacagac cgcctactgg cgattttgaa gtaatgttgg aaaaattaga      2280
     agcagtactt agtaccttac acgaaatgaa ttgtcattat agtctatcag gtgactttaa      2340
     tatcgacttt ctggatccac ggcgtaaaga tgttatctct ctctgtaact tgctctctga      2400
     attcaacctt cggccgatat tttgtgatga accttccagg gtagctaaaa cttctgccac      2460
     tttgcttgac aactgtttct ctagctctcg tcccattgat tctgtaacgt gggatccagg      2520
     gctttcagac catcgaggtc aaattgtctc atttcccatc gataccgaat ccaattatat      2580
     taataataag cgttttaaaa gacactggtc tgaagaggcc tgtctaggtc taactgggca      2640
     acttcattac ttttgctcca ctttcgaccc tcaacttgga aatgtaaata atacagtaga      2700
     acattttatc agaggcttgt actctgctat tgaactatgt tgtcctgtcc gaccagtaaa      2760
     gtcattttct tgcaggaggt taaaaaatga taccctcaat tcactcagtg aacgtaaaaa      2820
     agaatatcat tctctgtata aaaatactgg tcttcttaaa tataaaaagc tcttcaataa      2880
     aactaataag ttacttaaaa agtccttata ccgagaaaag cgtaaaaatg ttgagagaat      2940
     gattaagaac tccaagaaca aatcttttac tacgtggaaa attataaagg accaaacgcc      3000
     gagtactaat aacaattcac taattgatgc tgttcgttgt gatggggtga ttgtttctga      3060
     tccagctaaa atagctaatg ttttcaatga acatctcacc tccctgcata atacgtttcc      3120
     aagtaattta gctcattcta tggctctgga gatgacaaaa aagtccctga aaaacccccc      3180
     tccaaccttt acattctccc agataacact aaatgagcta tactcatgtg tctgtagtct      3240
     caagccaaac aaagctgata catatggctg catacctcca tttttctttc gtgactattt      3300
     ttctatcatt ggtgagcatc tgctcgtgct gattaataaa tgtatcgtga caggtgtgtt      3360
     cccgcactgc ttgaaatctg ccaatgtaac tcctttgttt aaaaagggtt ccaggcagga      3420
     tgtatctaac tatcgaccta tttctgttct ttctacagta agcaaactat tcgaaaaaat      3480
     cctatttaag cagcttctat gccactttga gtccaataac ctgctatatg atcaccagtt      3540
     tggctttaga aagggtttat ctaccaccca tgctctgtat aaacttatag ataaagttct      3600
     caccgccttt gaaaaaaaac ttcctgtaat gagtatacat tttgatttaa ccaaagcttt      3660
     cgatctcctc aatcattctt tgctactcaa gaaattacat ttatacggtc tctctgaaaa      3720
     cgccttaacg ctcattgctt catatctttc tgatcgtaat cagagagtaa aaattgactc      3780
     tgtcaatgga cccattcttt ctagtgtctt acccttaatg accggagtcc ctcagggatc      3840
     aattttaggc ccacttttat ttatcatttt catgaatgac cttcccttta atgtcaaata      3900
     ccccatttta ctatttgcgg atgacacttc tgccttagtt gagggtggag atgtaatact      3960
     taaggctcgt gaagtgtatg accaggcctc cgcctggttt aatgccaacg atctgacggt      4020
     taaccaaagt aagacacaag ctttaatata ctcagccggc tcttgtaatg ctccatccat      4080
     tgattattgt attctaggag actcaaatag tattcgactg gaaaactctg ttgagtttct      4140
     tggtatccaa atagataaag ggctcacctg gaaagaacat accagtaaag tcatatgtaa      4200
     attaagccga gcatcttggg cccttcgcaa cctgtcaaga atatctaccc ttcagtgttg      4260
     cttagcattc tatcatgccc atgttgtttc ccatatgaga tacggactaa tcctgtgggg      4320
     ccgtagcact ggagcagagc aagttttcat gttacaaaaa aagctcgtca gaattatgtt      4380
     taatatgccc tggaatgccc actgccgccc aatcttcata gagcatagat tgttcaccct      4440
     gacctccctt tatatcttgg atagcctaaa atttgcaatc tcaaatggat tggtatctcc      4500
     ctctgatctt ctaccgtctc ataattacaa cagcagacat agagatatca aaaacgtaaa      4560
     agtccgattg aaactatctg agcaagattg caaattttcg gctatccaaa ttataaatgc      4620
     tctaccctgg aatgtcaaaa aacaactccg cgacggtgat atccggaagt ttttcaattt      4680
     acttcgcgat cttcttttga gcaaggcttt ttataatttg aacgagtttc taaactcatc      4740
     tgttgaataa cgttctaacc accaactaat gtacagttgt aatttatatt tttaattatt      4800
     gtatagtgtt tcttgacctg taccatagcc ctaataatgg ggctcccatg tacaaagttt      4860
     taataaataa ataaataaat aaataa                                           4886
//
ID   Daphne-3_HMM repbase;    DNA;    INV; 4986 BP.
XX
AC   .
XX
DT   09-FEB-2013 (Rel. 19.10, Created)
DT   09-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-3_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4986
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2788-2788 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           433..1326
FT                 /product="Daphne-3_HMM_1p"
FT                 /translation="MPPKKASPNSRDKLNIPNYDTNQSSAVTDTDNEDLSN
FT                 VTVRPRARKRQHDDEVSALTLEMRKSFEILKNQQNTIQQSIKDIQSQNSDI
FT                 IKSMDFISKQYEDMKDRLIKLESEKLSHLSYIQSLEIKVENLERSQTQTCI
FT                 EIRNLPVQNKESKNDLLSVVKNIGAVTNIHIEESHLRDIFRLSKKNGASKP
FT                 IIADFSSILIKDKILAAVKAYNRNXNKLNTLHLKLEGEPQPVYISECLTDK
FT                 ARKIFYSAREFSKKHGYKFCWTAHGKVFLRKSEGAQCHRIDNDKDLDHLLS
FT                 SPSHKL"
FT   CDS           1645..4572
FT                 /product="Daphne-3_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFPLNNICNDIDTVQVSDSMVCSPENLIHHIDTNHNA
FT                 LTVMHTNIRSVSCNFDALTVLLERLRIQCDILILTECWLSXTTVVPSIHGY
FT                 TSYTSDYHNQNDGVIIYVKSDIKHSTTNVSLSGASCLVLRHNDEYAVVAVY
FT                 RSPSNSNIDNFCDSLDSCLLDLKLVDSVVVIGDININITSTNSDSNSGKYL
FT                 DLLAFHGFSSAHSFPTRNESCLDHVMLRSNKSAATYILDSYITDHAPLVFC
FT                 LQCNIKKFSSIKTFTKIDYVSLLQTISNFDFTCIFNSSDANAAATLLTNMI
FT                 YDAISMHSKQIKISHRKRTLKPWLTPGLVRCIRHRDKLHKKVKIDPTNAIL
FT                 RITYTRYRNFCNNLLKKLKTAYEKNEFLKYKNNPKGTWNTVNKIVCYKKPS
FT                 PTSTPLLDLHSDPCVSVNVVNNYFAGIGASYANAILNKQLDIHSLPNTLNS
FT                 QSSASNDSMALYDTDINEIQAIIANLKDDSAAGTDGIPTSIIKKASTYIAP
FT                 VLMHIFNLCLSTGVFPDIFKRAQVHPIYKSGDRDTVVNYRPISILSVLSKI
FT                 LEKLLNKRLVNYLQHCNVIADNQFGFIKGKSTEDAALLLTETIVKKMDSAS
FT                 KVIGVFLDLSKAFDTVSVPLLINKMEXIGIRGSALEIFRSYLSNRSQCTKI
FT                 NQYVSDNTAICFGVPQGSVLGPTLFILYINSLCATSLPNCNIIAYADDTAL
FT                 VVHGKDWNEAKHYAEHAVRWITGWYNANLLTLNIDKTKYIAFSHRSHSQPP
FT                 PELSIRVHTHTCTLLDNCNCPSLPRTSNIKYLGLTVDCYLNWKLHINHITG
FT                 RIRKLIPIFRKLRSSANFETLLLVYHALIQSLVSYCICVWGGTSKNSLLPL
FT                 ERAQRAILKVMLGKPRRYSTDLVYSNSSVLTVRQLFIKSVVLRKHRSTPFK
FT                 TICKRNKPKVCDIECCKTKLARSHFYVLSSRLYNDVNKIINIYPLSSSKCK
FT                 AVMNTWLQKLSYLDTENLLRS"
XX
SQ   Sequence 4986 BP; 1604 A; 1054 C; 793 G; 1519 T; 16 other;
     atctttgccc cggcggtcaa accggtgcca tatcaacttt ttgtctctga gstttaaaaa        60
     taattattta ttgcaactgc ggaatatttt cstacaaaat gwctttaaag tgtttktgta       120
     tctacagtga agtgaatttg tgctttaaaa actaaaacaa taaaggaata agtgaatwta       180
     cacttgtagt tgcaaackat tttktatcca accctcawta gctgacaagt catactgcgg       240
     ccaatgcacg caatccgcac ggttctgcaa tacgcataag gatcatattg ctgtgcgaaa       300
     gctccgcggc ctgctcatac gtttgcatgt caatgaataa ttaaacagaa gcgtctcacg       360
     tcctaactaa agtaagtttg tctctcggag gcaattttat tagtaaattg tgagatatat       420
     ttttacatta caatgccacc caagaaggct tctcctaatt ccagagacaa gcttaatata       480
     cctaactatg atacgaatca aagctcagca gttacggaca ctgacaatga agacttaagc       540
     aatgtgactg ttagaccacg ggcccgcaag cgccaacatg acgatgaggt gtccgccctt       600
     acgctagaaa tgagaaaatc ttttgaaatc ttgaagaatc aacagaatac tattcaacaa       660
     agtattaaag atattcagag tcaaaatagc gatatcataa aatctatgga ttttatttct       720
     aagcaatatg aagatatgaa agacagacta ataaaactgg aatctgaaaa attatcacac       780
     ttatcttaca tacaatcctt agaaataaaa gttgaaaacc tcgaaagatc gcaaacacag       840
     acttgtattg aaatcaggaa ccttcctgtt caaaacaagg aatctaaaaa cgatctgctg       900
     tctgtcgtga aaaatattgg agcwgtcacc aacattcata ttgaagagag tcatctaagg       960
     gatattttcc ggctcagcaa gaaaaacgga gctagtaagc caataattgc ggacttttcc      1020
     tcaattttaa ttaaagacaa aatattggcc gctgtgaaag cgtataaccg caacamaaac      1080
     aaattaaaca cattacatct taaactagaa ggcgaacctc agcctgttta cattagcgag      1140
     tgcctgactg acaaagcaag aaaaatattt tattctgccc gtgaatttag taagaaacac      1200
     ggatacaagt tttgttggac tgcccatggc aaagtctttc tccgcaagtc tgaaggtgcc      1260
     caatgtcatc gaatcgacaa tgataaagac ctggatcatc ttctttcttc gccctcacat      1320
     aagctatgac tatataacca gcaaatcttg ttttgttttt tgttttgcat ggtcttttat      1380
     kttccacact acgttcatag tttattaagt tattacttag ttttatattt tagtgaatat      1440
     taccactttt tgttaactat tataattaca cattatttac cacaacgttt attacaccaa      1500
     ttcataccat tcttcaaatc acacatacaa aatacaggcc ctcattcata aattctttgc      1560
     atattttckg ccatgktctc attcatgata awttaaaaag tttgttttca ccaaataaaa      1620
     gtcctaataa gcccttatgt cactatgttt ccattaaata atatatgtaa cgatattgac      1680
     actgtccaag tgtccgattc catggtttgt tctcccgaaa atttaattca tcacattgac      1740
     acaaaccata acgctttaac agttatgcat acaaatattc gtagcgtaag ttgtaatttt      1800
     gatgccctga ctgtattact tgagagacta cgcattcaat gtgacatcct gatccttaca      1860
     gaatgctggc tttccwcgac tactgttgta cccagcattc atggttacac ctcatacact      1920
     tcagattacc acaatcaaaa cgatggtgta atcatttatg tcaaatcaga cataaagcac      1980
     tcaactacca atgtttcctt atctggcgct agctgtcttg ttctaagaca caatgatgag      2040
     tacgcggtag ttgcagttta tcggtcacca tcgaacagta atatagacaa tttttgtgac      2100
     agtctcgatt catgtctcct cgaccttaag ctagttgact ccgtagtcgt gattggtgac      2160
     ataaacataa atattacatc aaccaattct gactctaaca gtggcaaata cttggacctg      2220
     ttagctttcc atggattttc tagtgcccac tcctttccaa cacgcaatga gagctgtctt      2280
     gatcatgtga tgctgagatc gaataaatct gctgctactt atatcctaga ttcctatata      2340
     accgaccacg cgcctttagt cttttgttta caatgcaata taaaaaagtt ttcttccata      2400
     aaaaccttta ccaaaattga ttatgtgtct ttactacaaa caatttcgaa ctttgacttc      2460
     acctgtatct ttaactcctc tgatgcaaac gccgcagcca ccctgctgac taatatgatc      2520
     tatgatgcta tttcaatgca ctctaagcaa ataaaaattt cccatcggaa acgtacacta      2580
     aaaccatggc tgactccggg actggtacgg tgcattagac accgtgacaa actacataaa      2640
     aaggtcaaaa ttgatccaac taatgcaatc ctacgtataa cttacacaag atatcggaat      2700
     ttttgtaata atttgttaaa aaaattaaag acagcgtatg aaaaaaacga atttctaaaa      2760
     tacaaaaata atccaaaagg tacctggaac actgtcaata aaattgtttg ctacaaaaag      2820
     ccctcaccta cctccacacc tttacttgac ctgcacagtg atccttgcgt atccgtaaat      2880
     gtcgtaaaca attattttgc tggcatcggt gcctcatatg ccaatgctat attaaacaaa      2940
     caacttgaca tacatagctt gccaaataca cttaactctc agtcttccgc ttcaaatgac      3000
     tccatggcgc tgtatgatac agacattaat gaaattcagg ctattattgc aaacttaaaa      3060
     gatgactctg ctgctggaac agacggcatt cctacttcta ttatcaaaaa ggctagtact      3120
     tatatagctc ccgttcttat gcatattttc aatttatgtt tatcaactgg cgtttttccg      3180
     gatatcttta agcgagctca ggttcatcct atctataagt ccggcgacag agacactgtg      3240
     gtcaattaca ggccaatatc aatactctcg gttctatcaa aaattttaga aaagcttttg      3300
     aataagagac ttgtaaatta tctgcaacac tgtaacgtca ttgctgataa tcaattcggt      3360
     tttatcaagg gtaaatcgac ggaagatgct gcactactgc ttactgaaac aatagttaag      3420
     aaaatggaca gtgcatcaaa agtgatcggc gtattcctcg atctatccaa ggcctttgat      3480
     accgtttctg tgccactatt aataaacaaa atggaaasta tcggaatacg tggcagcgct      3540
     cttgaaatct ttcgctcata tttatcaaat cgctcgcaat gcacgaaaat caaccagtac      3600
     gttagtgaca atactgcaat ctgttttggg gtaccacagg gtagtgtcct tggacctacc      3660
     ttgttcattt tatatattaa tagcttatgt gccacatcat taccaaattg taacatcatt      3720
     gcgtatgcag atgatactgc gcttgtggtt catggaaaag attggaatga ggccaaacac      3780
     tacgctgaac atgcggtcag atggataaca ggctggtaca atgctaatct tttaactcta      3840
     aatatagaca aaaccaaata catcgcgttc tctcatcgct cccattccca gccgccacct      3900
     gagttgtcga ttagagtaca cacacatact tgcactcttc tggataactg taattgtcct      3960
     agcttacctc gcacttctaa tatcaaatat cttggcctta cagttgattg ctacctgaac      4020
     tggaaacttc atatcaatca cataaccggc cgaataagaa aactgattcc tatttttagg      4080
     aaacttagaa gttcagctaa ttttgaaacc ttacttcttg tttatcatgc ccttattcaa      4140
     agtctcgtca gctactgcat ctgtgtatgg gggggtacaa gtaaaaactc gttacttccc      4200
     ttagaacgtg cccaaagagc catactaaaa gtcatgcttg gaaagcccag acgttacagt      4260
     accgacctag tttacagtaa tagctcagtc ttaacagtta gacaactttt cataaaatca      4320
     gttgtactgc ggaagcatag gagcactcct ttcaagacca tctgtaagcg caataagcca      4380
     aaggtttgtg atatcgaatg ttgcaaaacc aagctagctc gttctcactt ctacgtccta      4440
     agcagtcgct tatacaatga tgttaataaa attatcaaca tttacccttt gtcttcttcg      4500
     aaatgtaaag cagttatgaa tacctggctg cagaagttgt cctacttgga tacggagaat      4560
     cttcttcgta gctaacttac attcatgact cgtacataca tacacgcgca taaacacaca      4620
     cacacacaca cacacaccac cacacacaca cacacacaca tttaacacgt ggtaataata      4680
     tagaatctaa ttgtttttct tttcttcttt ttcaataatt aatttaaaac cttttgttat      4740
     atcgctttat ttttgcttat gtcgacataa taatatgtac ctaattgatg agtattctca      4800
     cttttgtcat cgaaatagtg tcttaggggc aaagatgctg gcagctgtga cacagtttac      4860
     actagtacgg ctgccatcgc tcacctctac taaattgttg tcttgttttt tccatattct      4920
     aacgaaatta gagtgtatat gtaacattta attactgaat aaagcattta ttattattaa      4980
     aaaaaa                                                                 4986
//
ID   Daphne-3_LMi repbase;    DNA;    INV; 4626 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.11, Created)
DT   03-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4626
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3117-3117 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           427..1569
FT                 /product="Daphne-3_LMi_1p"
FT                 /translation="MNSKCVSCRRKVSLGVSCSCCDRWFHWGCSGVGVGET
FT                 NETLPFFCRVCSRDRKIAEQEGKIRALQADLDRAREELMRLRGEEGNQRWE
FT                 VIAGNRGQRKRTVSDSFAIGTTNRFSPLSQLSKEEAPVEVGVVKMQQNFIR
FT                 KPKVSKKVESRKKVLLLGSSHGRGVGQILQEKLGDRYQVTNFFKPSACLSQ
FT                 VVEDLGSLCKDFTKQDHVVVVGGVGNSIDRDQGYSIECDLVKIASATTHTN
FT                 VGLVPAFVRHDQPQLNRSVRRVNMELDQLRRAATLSDIGLVPVEAIDRWDF
FT                 TRHGLHLNRKGKGKLAGLIAKTLRGDTAIHECTSFFRLRPGSNGKLRQACA
FT                 KDAQNSHESDKSKVKNNVTIFHQNIGGLKNKVESHKRK"
FT   CDS           join(1712..3655,3595..4461)
FT                 /product="Daphne-3_LMi_2p"
FT                 /translation="MEKVNISSYKLAAHVNRENKVRGGVAIYVKSYHCVKS
FT                 LETQKFCVEQHIEACACQLKLNKGPSFIIVTVYRSPSGNFQLFMENLDALL
FT                 CYLSDKGKQIIICGDFNVDSLKECNRKNDLEVLLGSFNLSSVIDFPTRVVK
FT                 DSSTLIDNFFIDQDKFKNINACPVENGLSDHGAQLVTVNDIVPLCNSKQPS
FT                 KVVRSVNDSTIRNFRENLQQLDWDEVYKEADANLKYNLFHDTFVRVFENCF
FT                 PKKIVKYNDKKPCKKPWLTKGIRISCNRKRELYLTARKSNDPETVKYYKNY
FT                 CATLRKVIKKSRSMCIMSEISTSDNKIKTIWNIITRETGQPRAQGDSITIK
FT                 VNEKFTTNKPEVENIFNNYFLNVVEKIGSKCSLEEARQLMEQAIPTQFDTI
FT                 EIPPTSPSEIKKIINSLKSKSSHGIDGISSRVIKACSQEISRILSHICNSS
FT                 LKQGVFPDRLKYAIVKPLHKKGDTSDVNNYRPISLLTALSKILEKVMYSRV
FT                 VSHIGKNKVLTKCQFGFQKGFSTENAIYTFTNEILNALNNRTSPVGIFCDL
FT                 SKAFDCVNHGILLDKLKYCGMNGTVYKWFKSYLTGRVQKVDISSSHNMQKT
FT                 ADSSNWGTIKNGVPQGSVLGPLLFLIYINDLPHSIFMKMQSWFFLLMIQVL
FT                 APFYIHEDAELVLFADDTSIVITPDRQELTEEIVNDVFQKIIKWFSANGLS
FT                 LNFDKTQYIQFHTVNGMTPLINIDFDQKSVAKVEYSKILGVCIDEGLNWKK
FT                 HIEDLLKRLSSATYAIRVIANFGDIHLSKLAYYAYFHSLLSYGIIFWGNSS
FT                 LSKKVFIAQKRVIRIIAGAHPRSSCRHLFKELGIFTVASQYIYSLMKFVIT
FT                 NPTEFKSNSSVHNYNTRRKNDLHYSRLNLALAQKGVNYAATKVFGHLPNSI
FT                 KSLTDSQLAFKNKLKEFLNGNSFYTIDEFLDIN"
XX
SQ   Sequence 4626 BP; 1596 A; 741 C; 957 G; 1332 T; 0 other;
     gttggcagcc ctgcgcaagg tcggacgtgc tgttgaagag cgctcgtaaa agataaggaa        60
     tttagctagt aattctttta tttaatagca atgctgttac ctatttcggg aatttagctg       120
     taataaattg taatttaacg tttttaactg attaaatacg ttcattggcg tgctcttaaa       180
     gcccaccaat aaaagttttt cttttatttg cctattgttt tagtaacagc gaaaagtcgg       240
     ttttgtttac ttactgcttt taggcctaat ttccgagggt gcatatttag cgtgacacct       300
     cagttttaag tgcattttct aatagtttcc atacatatca gtgtctaata cataattata       360
     tttgtggtta atatatatat tatcgttatc aattaagtaa atctcgtaat taatttgtaa       420
     acaatcatga attccaagtg tgtgagctgc cgtaggaaag ttagtttagg ggtttcatgc       480
     agctgttgcg acaggtggtt tcattgggga tgtagcggtg tgggagttgg ggaaacaaac       540
     gagactcttc cattcttttg cagggtttgc tcaagagata ggaaaatagc agaacaggag       600
     gggaagatta gagcccttca ggctgatttg gatagagcga gggaggaact gatgaggtta       660
     aggggggagg agggtaacca gaggtgggaa gtgatagctg ggaacagggg ccagagaaag       720
     agaacagtgt ctgacagttt tgcaattggc acaaccaata gattttcccc gctatcacag       780
     ttgagtaagg aagaggctcc agtagaagta ggagtagtta agatgcaaca gaacttcatt       840
     aggaaaccaa aagtttcaaa aaaagtagaa agtaggaaga aagttctgtt gctaggtagc       900
     agccatggaa gaggtgtggg ccagattttg caggaaaaat taggtgacag gtaccaggtc       960
     acaaactttt tcaagcccag cgcatgtctt agccaggtgg tagaggattt aggttccctg      1020
     tgcaaagatt tcactaaaca agatcatgtt gtggtagtgg gtggagtggg aaacagtatc      1080
     gatagggatc agggctacag tattgagtgt gacctggtga aaatagcctc tgcaacgacc      1140
     cacacaaatg ttggtctggt gcctgctttc gtgcgacatg atcagcccca gttgaaccgc      1200
     tctgtcagga gggtcaatat ggagttagat cagttgcgta gggcggccac tctgtcagac      1260
     attggtttgg ttcctgttga ggctatagat aggtgggact tcacaaggca tggcctacac      1320
     ctcaatagga aagggaaggg taaactggct gggttaatag caaaaacctt aaggggggac      1380
     actgcaattc atgaatgtac ctcttttttt aggctaagac cagggtccaa tgggaagctc      1440
     aggcaggcat gtgctaaaga tgctcaaaac tcacatgaat ctgacaaaag taaagtaaaa      1500
     aataatgtta ccatatttca ccaaaatatt gggggattaa agaataaagt tgagtctcac      1560
     aaaagaaagt aaaaaataat gttactatct ttcaccaaaa tattggggat taaagaacaa      1620
     agtagatgag ctactggttt gtttagatga catagaatca gagaatgtaa tagatatact      1680
     atgcctatct gagcatcaca ttgtgacgga tatggaaaaa gtaaacataa gcagttacaa      1740
     actagcagca catgtgaata gagagaataa ggtgagagga ggagttgcca tctatgtcaa      1800
     aagttatcac tgtgtaaaaa gtttagaaac acaaaagttt tgtgtagagc aacatataga      1860
     agcatgtgcc tgtcagctta aactgaataa aggtccttct tttataattg taacagtata      1920
     taggtcccct tcaggaaact ttcagttatt tatggaaaat ttggatgcct tgttgtgcta      1980
     tctgtcagat aagggaaaac aaattattat ttgtggggat ttcaatgttg actcactaaa      2040
     ggaatgtaat aggaagaatg acctggaagt cttactcggt tctttcaatt tgtcatctgt      2100
     aattgatttt cctactcggg tagtaaagga cagcagcaca ctgatagata acttttttat      2160
     agaccaagat aagtttaaaa acataaatgc ttgtcctgtt gagaatggtc tttctgatca      2220
     tggtgcacag ctagttacag taaatgacat agttcctctc tgtaattcaa aacagccctc      2280
     caaagttgtg cgttcagtta acgattcaac aattagaaat ttcagggaaa atcttcagca      2340
     gttagactgg gatgaggtgt ataaggaagc tgatgctaat ttaaaatata acttatttca      2400
     tgatacattt gtaagagtat ttgaaaattg tttccccaag aaaatagtta aatataatga      2460
     taagaaacca tgcaagaaac catggcttac taaaggaata agaatatctt gtaaccgaaa      2520
     aagggaactg tatctaacag caagaaagag taatgaccca gaaacagtca aatattataa      2580
     aaactactgt gctacattaa gaaaagttat taaaaagtcc agaagcatgt gcatcatgtc      2640
     tgagattagt acctctgata acaaaattaa aacaatttgg aatattatta ccagggagac      2700
     agggcaacca agagcacagg gagacagcat taccatcaaa gtgaatgaaa agtttacaac      2760
     taacaagcca gaagttgaaa acatttttaa taattatttt ttaaatgttg tggagaaaat      2820
     aggatctaaa tgttcattag aagaagctag gcagttaatg gaacaggcca tacccacaca      2880
     atttgataca atagaaattc cacccacctc tccttctgaa attaagaaaa taataaactc      2940
     tctcaagagc aaaagctcac atggaattga tggtatttcc agcagggtaa taaaagcttg      3000
     ttctcaagaa ataagtagga ttcttagcca catatgtaat agttctctga agcagggtgt      3060
     ttttcctgat agactgaaat atgctattgt taaaccactg cacaaaaaag gggatacgtc      3120
     tgatgtcaac aactaccgcc caatctcact tctgacagcc ttatccaaaa ttcttgaaaa      3180
     agtaatgtat tctagagtag tttcacacat aggtaaaaat aaagttctaa caaaatgtca      3240
     gtttggtttt cagaaaggct tttcaacaga aaatgctata tatactttca ccaatgaaat      3300
     attaaatgct ctgaataacc ggacatcacc cgttgggatt ttttgtgatc tctccaaggc      3360
     ttttgattgt gtaaatcatg gaattcttct agataaacta aagtattgtg gtatgaatgg      3420
     gacagtgtac aaatggttta aatcatacct aacaggaaga gtgcagaaag ttgacataag      3480
     tagttcacat aatatgcaaa aaacagctga ttcctcaaac tggggaacaa tcaaaaatgg      3540
     ggtgccacaa ggttcggtct tgggcccttt gctgttctta atatatatta atgacttgcc      3600
     ccattctata ttcatgaaga tgcagagctg gttctttttg ctgatgatac aagtatagtt      3660
     atcacacctg acagacaaga actaactgaa gaaattgtaa acgacgtctt tcagaaaatc      3720
     attaagtggt tctcagcaaa tggactatca ttaaattttg ataaaacaca gtacatacag      3780
     ttccatacag taaatggaat gacaccatta ataaatatag actttgatca gaaatctgta      3840
     gcaaaggtag aatattcaaa aattttaggt gtatgcattg atgaggggtt gaactggaaa      3900
     aaacacattg aagatctgct gaaacgtttg agttcagcta cttatgctat tagggtaatt      3960
     gcaaattttg gtgatataca tctcagtaaa ttagcttact atgcctattt tcattctctg      4020
     ctttcgtatg gcatcatttt ctggggtaat tcatcattga gtaaaaaagt attcattgca      4080
     caaaagcgtg taatcagaat aattgctgga gcccatccaa gatcatcctg cagacactta      4140
     tttaaagagc tagggatctt cacagtagct tcacagtata tatattcact tatgaaattt      4200
     gttattacca atcccaccga attcaaaagc aatagcagtg tacataacta caacactagg      4260
     agaaagaatg atcttcacta ttcaaggtta aatctagctt tggcacagaa aggggtgaat      4320
     tatgctgcca caaaagtctt tggtcaccta ccaaacagca tcaaaagcct gacagatagc      4380
     caactagcat ttaaaaataa attaaaagaa tttctgaatg gcaactcctt ctacactata      4440
     gatgaatttt tagatataaa ttagtaaatc tgaaaaaaat aaaaaataaa taaaaaaata      4500
     ttgtgtcatg taatatttag tacaaagtaa taatttgtaa agacaccttt cattaacctg      4560
     acacgttcca catcattacg aagtgtcgta ttcatgatct atggaacaag tactaatcta      4620
     atctaa                                                                 4626
//
ID   Daphne-40_LMi repbase;    DNA;    INV; 4211 BP.
XX
AC   .
XX
DT   20-APR-2014 (Rel. 20.01, Created)
DT   20-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4211
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 169-169 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(833..2086,2056..2520,2430..3227,3191..3514,
FT                 3414..3989)
FT                 /product="Daphne-40_LMi_1p"
FT                 /translation="SLLDTLLGPNHPLWSSRKKLLVATKPSNNPQTYEPRL
FT                 QESSMSGVQNLDLQYKAQKNAIHSNGKQILSCFKILHHNVQSMFNKLLEID
FT                 LFLKTKSHLDVVCITEHWLSKDKIEKNPIGEYTXASYSCRNESKGGGTAIY
FT                 VKKNVNYKCPTKYNSMQIEKDFEFSLLTLTDSNLLILNVYRAPDGNIQTFN
FT                 HSLDALLTKIHSLNKNLVICGDFNIDFLIPGKIKDECLNITNSFNLSPTVN
FT                 TPTRITRNSKTALDQIFINVDKLSHSVEVISTGYSDHEAQILTVNLNYKKH
FT                 YPTKTVMQRQFNDDNIRLFHYLLRGENWTEVYEENDVNYMFNSFHETFLHY
FT                 FNTAFPLKSRKIGNKCTNSWVTIGIRISSKKKKRDLKNYMKHHVVNDQFRS
FT                 YYKTYCAIYKKVIKQAKNYIMINLTSKKLHNDKFIRESNNKMKGLWKVVKN
FT                 ETNSKQHETNKTLKLNLNDEVTSDPEKIVKAFNEYFSKIAENLIKNNCPRP
FT                 NSQHQTLVGSIPVQTSMFLHKVSNTEVLKTIKGLKNKYSSGSDNIPDLIIK
FT                 KCGEFITEPLTYIINASFIMEFSLTSLNYKEMWRIHYRTPNLYNKCILYNG
FT                 VFPDLLKVSKITPLHKKGPENDVANYRPIAQLSXFSKIFEKLFYTRLEGFI
FT                 NKFSLLSKHQHGFRKEKTTTTAIYEYLNTTLKSLDEKEICTGIFLDLSKAF
FT                 DVIDHTILLNKLATKGVRGIANKWLESYLSNRLQKVVFKFEKGNTTTQQCT
FT                 IHSSKTTPVRYGVPQGSILGPILFLLYIDDISTKLTTGHTTLFADDTSILI
FT                 TGSDAADHNQKIKPLMSSLSKWFNENNLIVNVQKQPTEQPHCKRTKTTYMN
FT                 FSLSSLKKEIPDIILNNQELSCVNSVKFLGIWLEENLKWETHTNYIKKKLS
FT                 TVCYILRILKKISQQISPHTCILLLLSLHITVWNHILGELSGGKKSVSKSV
FT                 LIHVYYSYFHSILQYGIIFWGNSPGGRDIFKIQKKAICIICNLKYNESCRQ
FT                 HFKTLGIMTLPSVYIYNIISFVKSYLLNNDCTLRFNGDIHNYETRQQSDLH
FT                 VIQSRTTCYQKSVLHVGIRMYNNLPNEIKTTKSPRAFTHNLKKYLLEKSYY
FT                 AVDDFFKELNCKPLCNKCSPMPGKSTKCTGL"
XX
SQ   Sequence 4211 BP; 1640 A; 793 C; 664 G; 1107 T; 7 other;
     ctgccagcaa aagtcgaaaa acaagtatcg atttgtgtat caatgtatcc aatgtaaaca        60
     aaccaggcct atccagtgta atgacgtgaa atccgtcaaa ttagtacaag aaaccatcaa       120
     agtgatcaac agaagaagcs agwwgcagaa atgcaagaag ggtwggatcc taaatatgaa       180
     gacagtcacg gtcgcggaat tgcacaaaac ataatgaata tgcagacgac tttgactgtg       240
     gctcacattc aattggagca cctctttttg ctgtgataac gccgtgtgta caggatagtg       300
     aatgtttttc gtcaagtgat agtgtcgtga tcattgagca acaaatgatg tagccaaaaa       360
     tcaggcaaat gacgctatca ggagagtaaa aamtactctc ggtaagttaa atggcacaaa       420
     agttgtcgtc gtcaaatacc acatagacac gatctaatgg aacaatctgt tgtgaatttg       480
     gaagttcaca aaagtaatga gaaactaaag aaaatatgta gtaaatttca caacgtctct       540
     cttgtaaata tcagtaatgt tgatagggac ctgcacacca ctcatggaat gcacttgaat       600
     aaaaggggta aaattactat cagtaaatta attatcgatg aaataacacg aaattctcag       660
     caatgtgtta caataagtgc attgccatgg aatggccctc ccacctaatc agacaaaacc       720
     aatcggaaaa aaacaaaggt agtgaaatga gttgcagtgc ctggagtggc acaccccaaa       780
     acagaacctg ctacacaaac agccactgtt agcaaaccag ggaaactagt aaagcctgct       840
     ggacaccttg ctaggcccaa atcaccctct atggtccagc aggaaaaaac tattagttgc       900
     aactaaaccc agtaataatc ctcagacata tgaaccaaga ctacaagaga gctccatgag       960
     tggtgtacaa aatcttgatt tgcagtacaa agcacaaaaa aatgccattc actccaatgg      1020
     aaaacagata ttatcatgtt ttaaaatatt acaccataat gtgcagtcaa tgtttaataa      1080
     gctattagaa atagatctct tcctgaaaac aaaatcacat ttggatgttg tctgcattac      1140
     tgaacactgg ctatcaaaag acaaaattga aaaaaaccca attggcgaat atactstagc      1200
     cagttattct tgtcggaatg aaagtaaggg tggtggtaca gctatctatg tcaaaaagaa      1260
     tgttaactac aaatgcccca caaagtacaa tagtatgcaa atagaaaaag attttgaatt      1320
     ctccctactt actttaacag actctaactt attgatactg aatgtttata gagcccctga      1380
     cggaaacatc cagaccttca accactccct cgatgccctc ctcaccaaaa ttcactcact      1440
     aaacaaaaac ttggtaatat gtggtgattt taatattgat ttcctcatac ccgggaaaat      1500
     caaagatgag tgtttgaata ttacaaattc attcaaccta tccccaactg taaacacccc      1560
     aaccaggatt actagaaatt caaaaacagc tctagatcag attttcataa atgtagacaa      1620
     attatcccac tcagttgaag tcatcagcac aggttacagt gaccatgaag cccagatact      1680
     aacagtaaac ttaaattaca aaaagcatta tcctacaaaa actgtaatgc aaaggcagtt      1740
     taatgatgac aatataaggc tttttcatta tctgttaagg ggcgagaact ggacagaggt      1800
     atatgaagaa aatgatgtaa actacatgtt taattctttc catgaaacat ttcttcacta      1860
     tttcaatact gcatttccat tgaagtccag gaaaattgga aataaatgca caaactcatg      1920
     ggtaacaata ggaataagga tctccagcaa aaaaaaaaaa cgtgacttga agaactacat      1980
     gaaacaccat gtagttaatg atcagtttag gtcatactat aagacgtact gtgctattta      2040
     caaaaaagta attaaacaag caaaaaatta cataatgata aatttataag agaatctaac      2100
     aataaaatga aaggcttgtg gaaagttgtg aaaaatgaaa caaacagcaa gcagcatgaa      2160
     acaaacaaaa cattaaaact gaatttaaat gatgaagtaa catcagatcc agaaaaaata      2220
     gtaaaggctt ttaatgaata tttcagtaaa atagctgaaa acctaataaa gaataactgc      2280
     cctagaccca atagtcaaca ccaaacacta gtgggaagca taccagtaca gacatcaatg      2340
     tttctccaca aagtatccaa tactgaagta ctcaaaacta taaaaggact aaaaaataag      2400
     tactccagtg gcagtgacaa catccctgac ttaattataa agaaatgtgg agaattcatt      2460
     acagaacccc taacctatat aataaatgca tcctttataa tggagttttc cctgacctcc      2520
     taaaagtttc taaaattacc ccactccaca aaaaaggccc tgaaaacgat gtagctaatt      2580
     acagacctat agcacaactc agcamattct caaaaatatt cgaaaaatta ttttacacta      2640
     gattggaagg ctttattaac aaattctcct tgctatcaaa acaccagcat gggttcagaa      2700
     aagaaaagac aactaccaca gctatctatg aatatctcaa cactacctta aaatcactgg      2760
     atgaaaaaga aatttgcact ggaatttttt tagatttatc aaaagccttt gatgtaattg      2820
     accataccat actactgaac aagttggcaa ctaaaggcgt aagaggaatt gctaacaaat      2880
     ggttggaatc ttatctatca aacagactac aaaaagtagt atttaaattt gaaaaaggaa      2940
     atacaactac ccaacaatgt actatccact cctctaagac aacacctgtc agatatggtg      3000
     taccacaagg ctcaatattg ggacccatac tgtttctact atacattgat gacataagca      3060
     cgaagctcac tacagggcat accacactat ttgctgatga cacgagtatt ctgataacag      3120
     gtagtgatgc agcggaccac aaccaaaaga ttaaaccact tatgtcatca ctcagcaaat      3180
     ggttcaatga gaacaacctc attgtaaacg tacaaaaaca acctacatga atttcagcct      3240
     ctcatctcta aaaaaagaaa tccctgatat tattctaaat aaccaagagc tctcgtgtgt      3300
     gaactcagtc aagtttcttg gaatatggct tgaagaaaac cttaaatggg agactcatac      3360
     aaattatatc aagaaaaagc tgtcaactgt ctgctatatt ctaaggatac taaaaaaaat      3420
     cagtcagcaa atcagtcctc atacatgtat attactctta ctttcactcc atattacagt      3480
     atggaatcat attttggggg aactctccgg ggggtaggga tattttcaaa atacaaaaaa      3540
     aggcaatatg cataatatgt aacctaaaat ataatgaatc atgccgacaa catttcaaaa      3600
     cacttggtat tatgacactg ccatctgttt atatttataa tatcatctca tttgtcaaat      3660
     catatctatt gaacaatgac tgcacattaa gatttaatgg agatattcat aactatgaaa      3720
     caaggcaaca gtctgaccta catgtgattc aatccagaac aacttgctac caaaaaagtg      3780
     tcttacatgt tgggatacgt atgtataata atttacccaa tgaaatcaaa acaacaaaaa      3840
     gcccacgagc attcacacac aacttaaaaa aatacctttt ggaaaaaagc tactatgcag      3900
     tagatgattt ttttaaagag ttaaattgca aacccctttg taataagtgt tcgcctatgc      3960
     ctggaaagtc tacgaaatgt actggactat agtttgaaaa aacaattgca ttatatatat      4020
     ttaagtagat gcaatctaac aaataaagga ggcctacatt gtaatgtcta ttaccctatt      4080
     gtaaaatttt gcaaaataat tataacaaaa attagtttga aaattattta taaaaatgtt      4140
     tttgacctgt ccaatatcat atgtacaact gtacaatact atgatttcct ggatcaaata      4200
     aaatacaata c                                                           4211
//
ID   Daphne-41_LMi repbase;    DNA;    INV; 3124 BP.
XX
AC   .
XX
DT   20-APR-2014 (Rel. 20.01, Created)
DT   20-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3124
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 170-170 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..265,241..456,619..963,932..1276,1280..1729,
FT                 1733..2563,2431..2922)
FT                 /product="Daphne-41_LMi_1p"
FT                 /translation="EQQCMPQGTCSDDQACPHKSWSVKSQPSFLTTGMNLC
FT                 NYKPVQRLEVKDCGSMSFFHLNIQSVRNKLPELELFLLEFQCDILCLMSTG
FT                 HTLSNEHWLKEHEHNMYTPLGYKFLTGFFRSNIEKGGVSILMKNDLNCKIR
FT                 IVDLKHLASEGQIEIAAIHLPPSADTLKSHNFSCLNDKPTRQNACLDNVIS
FT                 NLSRDDVNLNVVKPMLSDHDGILLKLIVPKKDHRPTQPIVNRPVRQLKPIN
FT                 ITNLTQRLLTFDWDATVMENTTLNNAFDYPPQLIIMLLIIRPNLFNEYCPP
FT                 PPSTKVKYKEETKEKLTMVHPHLNSLRILLKIYYEKSCTDSEYRHSYNKLK
FT                 NIYKKDIISAKKEANGTYISQATNKCQAAWKIIKAEAGLQVVNPPIPRADE
FT                 LNKNFINSGQSAIDHSNLDDNADSFLSSLETELXVDKLKFRWHAIYPKDIL
FT                 DVARSLSNSRTEDIYGLSNFTIKRIIEAICIPLCQLINRMFLEGTYPDCLK
FT                 QTIVLPIYKKGDRTSPQNYRPIAIVPITSKIIETIMKNQLNDFFCNSLLNK
FT                 AQYGFRSGLSTVKAVQEVVHSVLHGFENRQHSYATLVDLSKAFDTVSHGIL
FT                 TKKLETYGITEKELALLKSYLANRNQMVLVNSTNKSDPLKVQYGVPQGSVL
FT                 GPFLFIVYVNDLPNLLPFKSVMYADDTTFITSHNDVNAVKQMNNSMMEKAT
FT                 QWFQENRLTLNNNKTEHILFSLGNINNEQNHPVKLLGIYLDSKLCWNTHTE
FT                 KLCSKLARVLYLLRKLKDCVSKELMLMAYYAFFHAPYIMEYFFGETPLERK
FT                 KSSSGKRKPSDAFLARTHAYGILCFFPCTLHYGILLWGNSAGAKEVFLWQK
FT                 KAIRCIFGLSKLTSCKQYFVQHKILTVPSLYVLKALMHARQNVDEYESRSD
FT                 VHLYGTRNRNLLDIPWARLSKVKNSFLHMAKIFFNKLPYNIRELHENKFKI
FT                 VIETWLKEKALYNTNEFIWTENKSCY"
XX
SQ   Sequence 3124 BP; 1144 A; 557 C; 518 G; 904 T; 1 other;
     tgaacaacag tgtatgcctc agggaacttg cagtgatgac caagcttgcc cacacaagtc        60
     ttggtcagtg aaatcacaac catccttttt gactactggt atgaacttgt gtaattacaa       120
     acctgtgcaa cgattggaag ttaaagactg tggatctatg tctttcttcc atttgaatat       180
     acagtcagtc agaaacaaat tgccagaact ggaactgttt ctactagaat ttcagtgtga       240
     catactttgt ctaatgagca ctggctgaag gaacatgaac acaatatgta tactccactg       300
     ggctataaat ttttaaccgg tttctttaga agtaatatag aaaaaggtgg ggtttcaata       360
     ttaatgaaaa atgatcttaa ctgtaaaatt aggatagtag atctaaagca tttagcatct       420
     gaaggtcaaa ttgaaattgc tgccattcac ttaccataac aaaattgtgg tagtatctat       480
     gtactgtgtt cccaaactgc attgacaatt tcatgcaaca tatagatatt taattgtgta       540
     cctgcttaga tataagaatc ataaaatact tattttggtg acataaatat tgatgtcaca       600
     gtaaaaaaca aaatgtagcc ttctgctgat accctgaagt cacataattt ctcttgcctt       660
     aatgataagc ctactagaca gaatgcctgc ttagataatg ttatatctaa ccttagcaga       720
     gatgatgtaa atttaaatgt tgttaaacct atgttgtctg accatgacgg aatactccta       780
     aaattaattg tgcctaaaaa agaccataga cctactcaac caatagtaaa tagacctgtg       840
     agacagttaa agccaataaa tataacaaat ctcacacaaa gacttttgac atttgactgg       900
     gatgccactg tcatggagaa tacaacatta aataatgctt ttgattatcc gccccaactt       960
     atttaatgaa tactgtcccc caccaccaag cacaaaagtt aaatacaagg aagagacaaa      1020
     agaaaaatta acaatggtac accctcactt gaatagctta aggattctgt taaagatcta      1080
     ttatgaaaag tcttgtactg atagtgaata tagacattca tataacaaat taaaaaatat      1140
     ttacaaaaag gatattattt ctgctaagaa agaagccaat ggtacctaca tttctcaggc      1200
     tactaataaa tgccaagcag cctggaaaat aattaaagca gaagcaggtc tccaagtagt      1260
     aaatccacca ataccctaac gtgcagatga gctgaacaaa aattttataa attcaggtca      1320
     gtcagcaata gatcacagta atttagatga caatgcagac agttttctta gttcactaga      1380
     aacagagctg awggtagaca agctaaaatt taggtggcat gcaatctatc ccaaggacat      1440
     actggatgtt gccagatcac tgagcaactc caggactgaa gacatatatg gcctctctaa      1500
     ttttactata aaaagaataa tagaagctat ctgtattcca ttgtgtcagc ttataaatag      1560
     gatgttttta gagggaacgt atccagactg tctaaaacag acaattgtat tgccgatata      1620
     caagaaagga gacagaactt caccccaaaa ctaccgacca atagcaatag taccaataac      1680
     atcgaaaatt attgaaacaa taatgaagaa ccaattaaat gatttttttt agtgtaacag      1740
     cctactcaac aaggcccagt atgggttccg aagtgggcta tcaacagtta aagcagtaca      1800
     agaagttgta cattcagtac tacatggctt tgaaaatagg caacactcct atgccactct      1860
     agtagacctc tctaaagcat ttgacactgt atcacatgga atactgacaa agaagctgga      1920
     aacttatggg ataacagaaa aagaactagc attactaaaa tcatatctgg caaatagaaa      1980
     ccaaatggtt cttgtgaact caactaataa atctgaccca ctgaaagtac aatatggagt      2040
     ccctcaagga tctgtattgg gacctttcct atttattgtc tatgtgaatg acctccctaa      2100
     cttattgcct tttaaatctg taatgtatgc tgacgacaca acttttatta cctcacataa      2160
     tgatgtgaat gccgtcaaac aaatgaacaa ctccatgatg gaaaaggcaa cacagtggtt      2220
     tcaggaaaat aggctcacat taaataataa taaaactgaa cacatcctct tctctcttgg      2280
     caatattaat aatgaacaaa atcacccagt aaagctgtta ggtatctacc ttgatagcaa      2340
     actatgttgg aatactcaca cagaaaagct ctgcagtaaa ttggcaagag ttttatatct      2400
     cttaaggaaa ctgaaggact gtgtgagtaa agaactcatg cttatggcat attatgcttt      2460
     tttccatgca ccctacatta tggaatactt ctttggggaa actccgctgg agcgaaagaa      2520
     gtcttcctct ggcaaaagaa agccatcaga tgcatttttg gcttaagcaa attaacttct      2580
     tgcaaacaat actttgttca gcacaagata cttacagtgc ccagcctcta tgtacttaag      2640
     gcacttatgc atgctagaca gaatgtcgat gaatatgaaa gtaggtctga tgtgcactta      2700
     tatggaacta ggaataggaa cttactagac attccttggg cacgattaag taaagtgaaa      2760
     aatagttttc tacatatggc caagatattt tttaacaaat taccttacaa cataagagaa      2820
     ttacatgaaa ataaatttaa aattgtgata gaaacctggc taaaagaaaa ggcattgtat      2880
     aatacaaatg aatttatatg gactgaaaat aagagctgtt attaatgtga caatcaaaat      2940
     ttaatttata acctacactc ttttattgta catatttatg ttaaaaagct aatcatgtaa      3000
     caatatatat tttaatatgt aacatttata tatgttaact tttgtaccat aatgtatgca      3060
     atgacgatgc cttatacaac atcacagttg tccacaggca aaataaatca atttcaattt      3120
     caat                                                                   3124
//
ID   Daphne-42_LMi repbase;    DNA;    INV; 3864 BP.
XX
AC   .
XX
DT   20-APR-2014 (Rel. 20.01, Created)
DT   20-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3864
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 171-171 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(30..470,463..645,967..1401,1405..1551,
FT                 1804..2064,2055..2357,2270..2626,2545..3027,
FT                 3020..3751)
FT                 /product="Daphne-42_LMi_1p"
FT                 /translation="SRKYSESRNLNLQVAQQIPNVVAVQIPVSKMQENNRP
FT                 RNFVVLADSHGRGIASRISEKIVGKATAFVKPGAPMSEIEKPVHLSEVREL
FT                 TCNDYIVMFAGANDVFKNETSKATKELKKCLRHLTQTNVLLMTIPHRHDLP
FT                 PWSCINKEIKNKCCRLLFSKICAQNENVDVIDLSGTGRRFHTTHGLHLNGL
FT                 GKQLVVEKISDYLVKNRRSLRLRGLLNTELSSISVLCITEHWLNIDQIISF
FT                 SVPGFTLANYFCRNRYKNGGSLIFIKQGLKYKPINKFQHLNADMDFELALI
FT                 ELSDINTIIACIYRSPKGNFDSFLNKLEYVLNGIHLNKKLIVLCADFNVDF
FT                 LGTRNRKQLLTFRYTFNLRQLIETPTRIAKPTATALEPIFVNTNCTRDHEA
FT                 QLVTLQSTKEKTIAQVPKNSNISPPMANYIQKYIKIYRRVICQAKKLDNDI
FT                 YIRESANKSKAIWKVIKKETNKVSPKMENISLKHENKCITDPKLSQTIANL
FT                 FRSYFSDITNNLIVCDKGDNRNIQGNKMQSCFSSICVYETTPDEVIRVASS
FT                 FDKMTSGIDGIPDKIIKQCIANISLPLTDIVNSSFRQAHFRRVNHQAMYCK
FT                 HFIASYRYSEFIFPTGTFPESLKIAKVVPIHKKGDKLNIENYRPVALLSGF
FT                 SKIIEKIMYSRLINFLDKNKIITDAQHGFRTNKSQLVPSMILYKMLWKQWT
FT                 KNKRPLAYFVTTSAIYDFVQNAMEAVDKKQKATGIFLDLSKAFDILDHNIL
FT                 LKKLEAYGIRGVALKWFISYLANRKQIIEIKHELKGKTTICFSDAATIKKG
FT                 VPQGSNLGPILFLLYINDLDINIESHTNTFFADDTSILITGNTISQLQTNV
FT                 NKTTAQLNNGLRIINSWTPGKHKENNFLNFCLKGDPCNPTVTINSNEISPS
FT                 LHTKFLGIWLQNDFKWHVHVNKINGTLSKVCYSLRLLSVKASFETARIAYF
FT                 SQFHSVLLYGIIFWGNTPPSSVVFLTQKRAVRAIHHARQTDSCKPLFQKSS
FT                 ILPLPCMYILEICKYVRKNFNIHEHETRQKENLHVQQTRTAAYKCSTINSA
FT                 VQIYNSLPHKIKIISSYPLFCRTLRAFLLDHCFYSVTEFLDHLKYKRLEPR
FT                 QCKYCQ"
XX
SQ   Sequence 3864 BP; 1439 A; 765 C; 649 G; 1011 T; 0 other;
     tcagcgatga gatgaactac agtacctaat ctcgaaaata ttctgaaagc agaaatttga        60
     atttacaagt agcgcagcag attccaaatg tcgtagcagt gcagatccca gtgtcaaaaa       120
     tgcaagaaaa caacaggcct agaaattttg ttgttcttgc tgacagtcac ggtcgtggga       180
     ttgcttctcg gatcagtgaa aaaatagttg ggaaagcaac agcatttgta aagcctggtg       240
     ctcccatgtc tgaaatagag aaacccgtcc acttatctga agttcgtgaa ttaacctgca       300
     atgactatat tgtaatgttt gcaggagcaa atgatgtatt caaaaatgaa acttcaaaag       360
     ccacaaaaga attgaaaaag tgtttaagac acttgactca gacaaatgtc ctcttaatga       420
     caataccaca ccgacatgac ctacctcctt ggtcttgtat aaataaagaa taagtgctgc       480
     agattattgt tttctaaaat atgtgcacaa aatgaaaatg tagatgttat tgatcttagt       540
     ggcacaggtc gtagattcca cactactcat ggactgcact taaatggtct agggaagcag       600
     cttgtggtgg aaaaaataag cgactatctc gtcaagaatc ggagataaga cgacaaccag       660
     caaagaaaac tgaaccatca catatctcct ccatccacca atggagcaat catctccact       720
     gatccagaag agacacgcgg tccagtagaa gacaacactc cactccagta acactgaagc       780
     ctcaggcaga cgatttttta tggacggcca ccagcaaaca ggaatgaggt tagtggtata       840
     ataaaaatgc ccctggaaac tccaatgata ataaaataat atcagtaggc ctacctgtga       900
     tctaataaac accagcaaca cagatctttc tatttgtcat caaaatatcc agtcagttac       960
     aaataaagtc ttagacttag agggttgcta aatacagaac tcagctctat tagtgttctg      1020
     tgtatcacag aacactggct aaatattgat cagattatct ccttttctgt accaggcttc      1080
     acactagcaa attacttctg tagaaataga tataaaaatg gaggatctct tatattcatc      1140
     aaacaagggc taaaatacaa acctattaat aaattccaac atcttaatgc agatatggac      1200
     tttgagttgg cactcattga actcagtgac ataaatacaa tcatagcatg tatttatcgt      1260
     tctccaaaag gcaattttga ctcattcctt aacaaacttg aatatgtact aaatgggatt      1320
     catctaaaca aaaagttaat agtactatgt gcggacttca atgttgattt tcttggaact      1380
     cgcaatagga aacagctgtt atgaaccttc agatacactt tcaatttaag gcagcttata      1440
     gaaaccccaa caagaatagc aaaacctact gctactgccc tagaaccaat atttgtaaac      1500
     acaaactgta ctagggatca tgaagcccaa cttgttaccc ttcagtcaac ttaataccct      1560
     cccaaagctc taaaagaact aacagctaga aattttaatt caaataatat agaaaaatta      1620
     actcccgtta tcaagagagg tgggaagaag tttcacaagt agatgacaca accaaaataa      1680
     caaattctct agtactttca ctgagtattt tgaaactgcc ttccctctca aaacactaac      1740
     aataagagac aaaagtacaa aaacaaaggg atggataaca acaggtataa gaatttcaag      1800
     tgaaaggaaa agacaattgc tcaagtacca aaaaacagca acatatcccc tcctatggct      1860
     aattacatac aaaagtacat taaaatctat agaagggtga tatgccaagc aaaaaagttg      1920
     gacaatgata tatacattag agagtcagca aataaaagta aagcaatttg gaaagtaatc      1980
     aagaaggaaa caaataaggt gtccccaaaa atggaaaata tcagtctgaa gcatgaaaac      2040
     aagtgtataa ctgatcccaa actatagcaa atcttttccg aagctacttt tcagacataa      2100
     caaataattt aatagtctgt gacaaagggg ataacagaaa catacaggga aacaaaatgc      2160
     agtcttgttt ctcttcaatc tgtgtgtacg aaacaacacc agatgaagtc atccgtgttg      2220
     cttcaagctt tgataagatg acatcaggta ttgatggtat accagataaa atcatcaagc      2280
     aatgtattgc aaacatttca ttgcctctta cagatatagt gaattcatct ttccgacagg      2340
     cacatttccg gagagtctaa aaattgctaa agtggtacct atacacaaga aaggagataa      2400
     attaaatata gaaaactaca gaccagtcgc cttgctctca gggtttagta aaatcataga      2460
     aaagattatg tacagtaggc taattaactt tctagacaaa aacaaaataa tcactgatgc      2520
     ccagcatgga ttcaggacaa ataagtcaca actagtgcca tctatgattt tgtacaaaat      2580
     gctatggaag cagtggacaa aaaacaaaag gccactggca tatttttaga tttaagtaaa      2640
     gccttcgaca tcctcgacca caacatacta ctgaagaagc ttgaagcata tggaataaga      2700
     ggtgtcgcac taaaatggtt tatatcgtac ctggctaaca gaaaacagat aatagaaata      2760
     aaacatgagc taaagggaaa aaccacaata tgcttctcag atgcagcaac aataaaaaaa      2820
     ggagtacccc aagggtccaa cctcgggcca atcctctttc tcctatatat caatgatcta      2880
     gacataaaca tcgagtcaca cacaaatact ttctttgcag acgatacaag catacttatt      2940
     actggaaata ccataagcca actccaaaca aatgtaaata aaactacagc acaactaaat      3000
     aatggtttga ggataataaa ctcctggtaa acacaaagaa aacaacttcc taaatttctg      3060
     cctaaaaggt gatccatgca atcccactgt aacaatcaac tccaacgaaa tttcaccctc      3120
     tttgcataca aaatttctag gcatttggct acaaaatgac ttcaaatggc atgtacacgt      3180
     aaacaaaata aatggaacac tgagtaaagt atgctatagt ctacgtttac tgtctgtcaa      3240
     agcaagtttt gaaactgcca gaattgccta cttttcacag ttccacagcg tactactgta      3300
     tgggattata ttctggggca atacgccacc tagctcagtg gttttcttaa cccagaaaag      3360
     agctgtaaga gcaatccacc atgcccggca aacagattcc tgcaaacccc tctttcagaa      3420
     gtcgtcaatc ctcccactcc cctgtatgta tatacttgaa atttgcaaat atgttaggaa      3480
     aaatttcaat attcatgagc atgaaacaag gcaaaaggaa aatcttcacg tccagcaaac      3540
     aaggacagca gcttataaat gttccactat aaatagtgct gttcaaatct acaatagcct      3600
     accacataag ataaaaataa tatcatcata cccactcttc tgcagaaccc taagggcatt      3660
     tttattagac cattgcttct attcagtaac tgagttttta gatcacctca aatataaaag      3720
     gcttgaacca agacagtgta aatactgcca gtagtgcaca ttctttatgc catagtctgt      3780
     ttatatatat tgtgtgtgtg tgtgtgtgtg tgttgtatgt ttgtatccca caatctggaa      3840
     agatttttgg ataaataaat aaat                                             3864
//
ID   Daphne-43_LMi repbase;    DNA;    INV; 3852 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-43_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3852
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 172-172 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(126..359,350..574,578..754)
FT                 /product="Daphne-43_LMi_1p"
FT                 /translation="LGGSNYGYRNNSKHATQCLKRHYLISKCRMLCDQHAH
FT                 GYDLQGNSIINLEVLSKLYRQSAKFASFQNVTFFELSNSRDLKRLVHKHGL
FT                 HYNNAGKSHIGKMMTKLILKTTMCKNSVSATERPSCRKIKSAASTSNVHSI
FT                 PIPLALGGFSARNIRKSSINRNTTTNISCFRSPATVDFHRGQALHQHGHRQ
FT                 SAAGKTSSMSTFIGSSRGKRRS"
FT   CDS           join(768..1295,1277..1414,1350..1934,1849..2103,
FT                 2100..2210,2214..2324,2281..2628,2606..3682)
FT                 /product="Daphne-43_LMi_2p"
FT                 /translation="MHNSEGFFVPSLSCRANIKKVTSGTHSPSNSVKTCNS
FT                 PQLKTDKDKILTCLQINICSIRNKILELEHICNTLYVDVICISEHWLTKEQ
FT                 VDVFVPQGYVVGDIMCREQRKNGGAGIFVREGVKFSKIDVAKYCSETHGEF
FT                 SCVKLVDENIIVVSLYRSPNGDVNLFIEKFELLIKKFVTNKKILKFNARIA
FT                 VVVITTLKWLNRQTSHKIIFECIKIIKLVLYKTDRQVTKSFLNVLRSLNLY
FT                 CTNKCPTRGDACLDNIIINFYKEDFTIRFIGGSFADHDPLLLTLYKKQPIK
FT                 NXEPNYVLVRGQKEEYITLFIDKLRNENWDNVYNCQPGIQGTDIAFDNFFK
FT                 KFTDLWYSCSPLIKFRATGKPKNKVPNWYTEELSEIRENLHKLHMIYKYSC
FT                 MHRTEQREKLYNCYIKCKKFLQISTSIHVCIGQSRGKNFITVISNAKNFYK
FT                 SKLVIAKKLATEKFIESAPNKCKAAWQIINQSLTPKHTHVPLLDPNDLNNF
FT                 FISVRKEVTESFKGTNCSQLNYWLGLHPVTRCFTGNLSHPLTFKLLLNSQI
FT                 QKVWTVTGCPISLLKKQYTYMFPISFYIQKNNTLICSPLAFIFNKCLEFGI
FT                 FPNTLKISKVVPVYKKGDKKLPESYRPISIVPILSKIYEALMHSQLSTYFE
FT                 DNGLLCSSQFGFRKGMNTTAAVLEIIDQHCLLLKIKKNVSYIMKKMSLTLC
FT                 DLSKAFDCIPTEILLKKLEYYGLQGNTLAVITSYLKNRKQFVSVNNIQSSL
FT                 LEINTGVPQGSILGPFFFIVAINDLPSNIPHPVICYADDTTLFTSHQNIAE
FT                 LNHITKESLDIALDWFTANKLLCNPDKTQQLLIGMTREIENKSVKLLGIYI
FT                 DSKLNWHEHINNVCKKISRVSYLFLKLRDMVSLEYLRMTYFGLFQSHISYG
FT                 LIIWGHSSHIDKILKIQKKVLRIMCKKNYLEHCRPLFTSLKILTIVNLYIY
FT                 VAGLYIKNNMSELITRGEVHDHNTRVKSKLDIPRHRLTMTGSSHKVNAIRI
FT                 FNKLPNSARTMDINTFKNKWYNWLINHPFYNIKEYFSFPDDHISF"
XX
SQ   Sequence 3852 BP; 1370 A; 674 C; 684 G; 1123 T; 1 other;
     gaaaaaatga atgaatacag ctcgtcactt acggccactg gaataatgaa gctgaatgcg        60
     cccttgactg aaataatgaa aaacagcacg cacttaacga gttttttgaa agtgatatgt       120
     cataattggg tggcagcaat tatgggtacc gaaacaacag taaacatgct acacagtgtt       180
     taaaaagaca ctacttgatc tcaaagtgcc gaatgttgtg tgaccagcat gctcacggat       240
     acgatctgca gggcaactca atcataaatt tggaggtact ttcaaaacta tacagacaat       300
     cagcgaaatt tgcaagcttc caaaatgtga cattctttga gctttctaac tcaagagact       360
     agttcacaaa cacggtctac actacaacaa cgctggaaag tcacacattg gtaaaatgat       420
     gactaaatta atactgaaga cgaccatgtg caagaattcg gtctcagcca cagagaggcc       480
     atcgtgccga aaaataaaat ctgctgcatc aacaagtaat gtacacagca ttcctattcc       540
     cctagcgttg ggagggtttt cagccagaaa tatctagagg aaaagtagca tcaataggaa       600
     caccaccaca aacatcagct gtttcagaag tccagctact gttgactttc atcgtggcca       660
     ggccctccat cagcacggcc atcgtcagtc tgcagcagga aagacgtcca gcatgtccac       720
     cttcatcggc agcagcagag gcaagagaag atcataagaa ctaggaaatg cacaactctg       780
     agggattttt tgtacccagc cttagttgca gggctaacat aaagaaggta acttcaggaa       840
     cacattctcc aagtaacagt gtgaaaacat gtaacagtcc tcagttaaaa acagataaag       900
     acaagatatt gacttgtttg cagatcaaca tctgtagcat tagaaataag attttagaat       960
     tagaacatat ttgtaatact ctgtatgtag atgttatatg tatttctgaa cactggctaa      1020
     caaaagagca agtagatgtg tttgtacctc aagggtatgt agttggtgat atcatgtgta      1080
     gggagcagag aaagaatggt ggtgcaggta tttttgtaag agagggagtg aaattctcta      1140
     aaattgatgt ggcaaaatat tgctcagaaa ctcatggaga gtttagttgt gttaaactgg      1200
     tagatgaaaa cataatagtg gttagcctat atagatctcc aaatggggat gttaatctct      1260
     ttattgaaaa atttgagtta ctaataaaaa aattctgaaa tttaatgcaa gaattgcagt      1320
     tgtggtgatt acaacattga aatggttaaa cagacagaca agtcacaaaa tcatttttga      1380
     atgtattaag atcattaaac ttgtactgta caaataagtg ccctactcgt ggggatgctt      1440
     gtctggacaa cattattata aatttttaca aagaagactt tacaattaga tttataggtg      1500
     gaagctttgc agaccatgat cctctgctcc tgacacttta taaaaaacag ccaattaaaa      1560
     acamagaacc taactatgta ctagtaagag gacaaaaaga ggaatacatt acactattta      1620
     ttgacaagtt aaggaatgaa aattgggaca atgtatacaa ctgccaacca gggatacagg      1680
     gaacagatat agcctttgat aactttttca aaaaatttac agatttatgg tattcttgtt      1740
     caccattaat aaaatttaga gctacaggga aacctaaaaa taaagtacca aattggtata      1800
     ctgaagaact ttctgaaatc agggaaaatt tgcacaaatt acatatgatc tacaagtatt      1860
     catgtatgca taggacagag cagagggaaa aactttataa ctgttatatc aaatgcaaaa      1920
     aatttttaca aatctaagct ggtcatagca aaaaaactag ccacagaaaa gttcatagaa      1980
     agtgctccca ataagtgcaa ggcagcatgg caaattataa atcaaagctt gactcctaaa      2040
     cacactcatg tgcctctgct agatcccaat gatttaaata acttctttat ctcagttagg      2100
     aagtaacaga aagttttaaa ggaacaaatt gttcgcaatt gaactactgg ttaggcctcc      2160
     acccagtaac caggtgtttc actggaaacc tgtcacaccc actgacattt taaaaactgt      2220
     tgctaaattc tcaaattcaa aaagtatgga ctgttactgg ttgtccaatt tcattattaa      2280
     aaaaacaata cacttatatg ttccccatta gcttttatat tcaataaatg tttagaattt      2340
     ggaatttttc ctaatactct caaaatatct aaagttgttc ctgtttataa aaagggggat      2400
     aaaaaactgc ccgaaagcta tcgaccaatt tcaattgtgc ctatattatc aaaaatatat      2460
     gaggcactaa tgcactctca actaagtacc tactttgaag ataatggttt actgtgtagc      2520
     tctcaatttg gatttcgcaa ggggatgaac acaacagctg ctgtactaga aattattgat      2580
     caacactgtc tgctattgaa aataaaaaaa aatgtctctt acattatgtg acttaagtaa      2640
     ggcatttgat tgcattccta ctgaaatctt gcttaagaaa ttagagtact atgggttaca      2700
     aggcaacact ttagctgtta ttacctctta cttgaagaac aggaagcaat ttgtttcagt      2760
     taataatata cagtcatctt tgctggaaat taacacaggt gttccccagg gatctatcct      2820
     ggggcctttc tttttcattg tagcaatcaa tgacttaccc agtaacatac cacaccctgt      2880
     catatgttac gcagatgata ctacactgtt tacgtcacat caaaatatcg ctgagctcaa      2940
     tcacataaca aaagaatctc ttgatatagc tttggactgg tttactgcta ataaactatt      3000
     atgtaatcct gacaaaacac agcagcttct aataggcatg acaagggaga tagaaaacaa      3060
     atcggtaaaa cttctaggta tttatataga ctccaaactt aactggcatg aacatataaa      3120
     taatgtatgc aaaaagatat ctcgggtgtc atacctgttt ttgaaactaa gagacatggt      3180
     aagcttggag taccttagga tgacatactt tggacttttc caatcccaca tatcatatgg      3240
     tcttatcata tggggacatt cttctcacat tgataaaata ttaaaaatac aaaagaaagt      3300
     tttgcgtata atgtgtaaga aaaattattt ggagcactgt cgccctctct tcaccagcct      3360
     caaaatactc actattgtga atttatatat ctatgttgca ggactctata ttaaaaacaa      3420
     tatgtcagaa cttattacaa ggggggaagt tcatgaccac aacaccaggg ttaagtctaa      3480
     gttagatata cctaggcata ggttaacaat gactggtagc tctcacaaag tgaatgctat      3540
     cagaatcttc aataagttac caaactctgc tcggaccatg gatataaata cttttaaaaa      3600
     caagtggtac aactggttaa taaatcatcc attttataat attaaagaat atttcagttt      3660
     tccagatgat catattagtt tttagaaaaa tgttgctttc agttgtatta ttatatactg      3720
     cataaatcct attaatctta ggttcaatgc tattcattgt actttataca gtgtatatat      3780
     attgtaaaaa tgacgaagcc aatatcattg taaaatggtt tacggtgaat aaagattctt      3840
     gattcttgat tc                                                          3852
//
ID   Daphne-44_LMi repbase;    DNA;    INV; 4665 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-44_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4665
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 173-173 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1153..1323,1316..1558,1548..1850,1774..1902,
FT                 1887..2519,2510..2698,2637..3029,3007..3186,
FT                 3168..3749,3715..3999)
FT                 /product="Daphne-44_LMi_1p"
FT                 /translation="MSKCMLVFNFETERLERFHFNLNGKYMNRLGKKQVSM
FT                 RFAQLIKNQILVQKERLKYPSIPDLCEKTHLTPSVKIIQYKPNVSSTNSLG
FT                 KKQTFLDRLLKRNQDKPFLCQIQTGRPQDRNDKKVYHGNPDSLLNMTYVIH
FT                 MSYRALKGNVLVKQWSCNEXPLLDLQNADNNSLYFFHINIQSVRNKFSELE
FT                 LFLEVLQSDVLRLNEHWLKEDNVGCTSHWLQICTGYFRSKMEMWCXHTNVV
FT                 HPTGYKFVLDISDPKWRCGVXILIKSDLNHKVNVIDLSFYQSKLLSVEGEF
FT                 EVAAILFPECKVIVVSIYCAPKISAKTLVDHIENLLHYLLRYKMYKILIFG
FT                 DINTDVIVQSYRTRILLDTLKSFNLYCHNSQPTRFKACLDNVISNISNESL
FT                 ALNVIRPMLSDHDGIFLKLSEIRKEQQKPIEPSSLRQLKVSNISNFTHRLI
FT                 NIDWDYSTMENESVDKAFDYFLHRIKTAFDETCPLITKENRLYVKRKHKET
FT                 LRSVSSWYSPYLHKIRILLNIYYDKSCINDYFRXAYINLKKIYRKEIIAAK
FT                 KKGQWQLHFKRSTEKKLLLLKKKANGNYISESSNKCKAAWKVVKAETGVTK
FT                 ENIPIPLRAEDLNNFFYTSGKVATSNRIISDEPIMKNLPNFKWKPIHSKNI
FT                 TDIAALLSNSRTEDIYGLSNYITKKIIGIIATSVVPHKLLLLYLINRILTE
FT                 GTFPDCLELAIVLPIYKKGDRNSPENYRPIAIVPIIAKIIESLIKSKIINK
FT                 KQMNDYFETNNLLDNSQFGFRNGWSTIKAVQELVSSVIHGFENKQHTQATL
FT                 VDLTKAFDTVSHSILIDKFQNYGFAGTELALLKSYLTNRKQTVVVNSNTKS
FT                 HFLNVKYGVPQGSVLGPFMFIVYVNDLPTFLPFKTVMFADDTTFITTHHEM
FT                 TIVKQRNDSMVKNASQWFQRNMLTLNNSKTEKNPILTTTAKLKKILFSLRN
FT                 IDDEQHDLRKPVKLLGIYLDSKLSWNTHTEKLCTKLARVLYLLRKLKSCVS
FT                 EDILKMAYYAIFSHASVLWHIALGKFCWSK"
XX
SQ   Sequence 4665 BP; 1762 A; 800 C; 785 G; 1313 T; 5 other;
     agttgagtta cagtgcctca agttacaact ccaaaaagta tacaccaaga aaaaccacca        60
     tcatcagtaa cagaatcaac tactggacca gctgaacaaa tatcaggaac gccagacata       120
     gaacgcagta caactactgt ggaagaaaaa gatgtcacta cagatttgaa actaacatca       180
     acacaaaggg cagcacaaac aaccgaagca ggggcactta caccagtatc tcaattggta       240
     aaactacata ggcctactga aacggaagtc tcgacaacat cagatgagcg aacagaccca       300
     gaagcaagag agaagagaac cgcaactaca gtaaaagaac caacgtcaac tgctgcaggt       360
     agacggaaaa cagtgcctcc tctccggctc gacgattttt aattgaaggc agcaaaagga       420
     agagaaacag ctttgaaaga gtggaagtgt aaccgatgta aaagttttcc tgtaaactgt       480
     tcaggtacag acactcttgt aacaaaaaaa cagacaagaa ttaatgaatg aatataggtc       540
     gtctgtaaac agtaaacaag ataaccaaat atcatctgca gcaataaatg tttcccaaaa       600
     tagtaaacga gataaccaaa catagtatgc agcaataact gtttctcaaa aggctagtgc       660
     taacaggccc caggatgaac agagcaaagt acattctgcc aatgaaaaac aagctctcag       720
     tgaaggaaca ccgaatcact cagaagaatc aacaagaaca tcaaagagaa gaaataaaat       780
     ggtacttgtg cttgctgatg aacatgggat gtatttaaat aatttgatta gtaatgaact       840
     tgatacaact tttagtgtgc aaagcatcat agtcaggtgc accttttttc tgaagtgata       900
     aaaaatgtaa acaggctagc caaagatttt ggtccaaatg acagtgatga ttctagctgg       960
     tacaaatgaa attgaagcca caccaaacaa caataatgta gtataaacag tgcagttgca      1020
     aagcttacac ctctcagcaa caagaccaat ttaatactct ctacaatacc agacaggcat      1080
     gacaaaccag aactaaatat tcatgtaaaa acttttaata gtttacttgt ctcctatgtt      1140
     gacaagtcta atatgagcaa atgcatgtta gtgtttaatt ttgaaactga gaggttagaa      1200
     aggttccatt tcaatctgaa tgggaagtat atgaatagac taggtaaaaa acaggtttcc      1260
     atgagatttg cacaattaat aaaaaatcaa attttagtac agaaagaaag attaaagtat      1320
     ccctgatctc tgtgaaaaga cacatttaac accatctgta aaaattatcc agtataaacc      1380
     aaatgtaagc agtacaaatt ccttaggaaa gaaacaaaca tttcttgaca ggttgcttaa      1440
     gaggaaccaa gacaaacctt ttttatgcca aattcaaacg gggagacctc aggatagaaa      1500
     cgacaaaaaa gtgtaccatg gaaatccaga tagtttatta aatatgacat atgtcatata      1560
     gagctttgaa aggcaatgtt cttgtcaaac aatggtcatg caatgagaas cctttactag      1620
     atttacaaaa tgcagataac aattctttgt atttcttcca catcaatata caatcggtaa      1680
     gaaataaatt ttcagaactt gaactatttc tagaagtttt acaaagtgat gtgttgcgcc      1740
     tgaatgagca ctggcttaag gaagataatg taggttgtac atcccactgg ctacaaattt      1800
     gtactggata tttcagatcc aaaatggaga tgtggtgtak ccatactaat taaaagtgac      1860
     ttaaatcaca aagtcaatgt aattgatcta agcttttatc agtagaggga gaatttgagg      1920
     tagcagcaat cctcttccct gaatgcaagg ttattgttgt gtcaatttac tgtgcaccaa      1980
     aaatttctgc taaaacatta gtggatcata tagagaactt gttacattat ttacttagat      2040
     ataagatgta taaaatttta atttttgggg atataaatac tgatgtgatt gtacaaagtt      2100
     atagaactag aattctgttg gataccctaa agtcattcaa tttatattgc cataatagtc      2160
     agcctacccg attcaaagct tgtctagaca atgtaatttc aaatataagt aatgagagtt      2220
     tagctttaaa tgttatcaga cctatgctct ctgaccatga tggcattttc ctaaaattat      2280
     ctgagattag aaaagagcaa caaaaaccaa ttgaacctag ttcwctaaga cagttaaaag      2340
     tttcaaatat atcaaatttc acacatagac taatcaacat agactgggac tacagtacca      2400
     tggagaatga atcagtggac aaagcttttg attattttct acataggatc aaaactgcct      2460
     ttgatgaaac atgtcctctc attacaaagg aaaacaggtt gtacgttaaa aggaaacatt      2520
     gagaagtgtt tccagctggt attcccccta cttacataag ataaggatcc tcctaaatat      2580
     ctactatgat aaatcgtgca taaatgacta ttttagagma gcatatataa atttaaaaaa      2640
     gatctacaga aaagaaatta ttgctgctaa aaaaaaaggc caatggcaat tacatttctg      2700
     agtccagcaa taaatgcaaa gcagcatgga aagtagtaaa agcagaaact ggggttacaa      2760
     aagagaacat tcccataccc ttaagagcag aagacttaaa taactttttt tatacttctg      2820
     gaaaagtagc cacatcaaat cgtatcattt cagatgaacc aataatgaag aatttgccaa      2880
     attttaagtg gaagcctatc cattcaaaaa atataacaga tatagcagca ttactcagca      2940
     actccagaac agaagacata tacggtcttt ccaactacat tacaaagaaa ataataggaa      3000
     tcatagctac ttctgttgta cctcataaat aggattttaa cggagggcac atttcctgac      3060
     tgcctggaac tggcaattgt ccttcccata tataaaaaag gagacagaaa ctcacctgaa      3120
     aattacagac ctatcgctat agttccaata atagcaaaaa tcattgaatc attaataaaa      3180
     agcaaatgaa tgattacttt gaaaccaata accttctaga caattctcag tttggttttc      3240
     gtaatggatg gtcaacaata aaggcagtcc aagaacttgt atcatctgtc atacatggct      3300
     ttgaaaataa acagcatacc caagctactt tagtggatct aaccaaagcc tttgacactg      3360
     tctcccacag catcctgatt gataaatttc aaaattatgg ctttgctggt acagaattag      3420
     cactgctaaa atcatacttg acaaacagga aacagacggt ggttgtcaat tcaaatacta      3480
     aatctcattt tctcaatgta aagtatggag tcccacaagg ctccgtactg ggacccttca      3540
     tgtttatagt ttatgtaaat gatttaccaa cttttttgcc gtttaaaact gtaatgtttg      3600
     ctgatgacac aaccttcatc acaacacacc atgaaatgac tattgtgaaa caaaggaatg      3660
     attccatggt gaaaaatgca tctcaatggt tccagagaaa tatgctgaca ttaaacaaca      3720
     gcaaaactga aaaaaatcct attctcactt agaaatattg atgatgagca acatgacctc      3780
     agaaaacctg taaaattatt aggcatttat ctggatagca aactttcttg gaatactcat      3840
     acagaaaaac tttgcacaaa actagccagg gtattatatt tattaaggaa actgaaaagt      3900
     tgtgtaagtg aggatatcct aaaaatggca tattatgcaa ttttttcaca cgcatctgta      3960
     ctatggcata ttgctttggg gaaattctgc tggagcaaat gatgtctttc tatggcaaaa      4020
     gaaagcaatc agatgtattt tagggttaaa cagtctagct tcatgcaagc cttactttat      4080
     taagcataaa attctaacgg ttcccagtct ttacacaagg tatgaaatca gagcagatgt      4140
     ccataatatg acacaagaag ttcaaattca ttgaacatac cttgggttag gttacaaaaa      4200
     caaaagacaa tttcctacat attggtaagt gtactacaac aagttacccc tatgtataag      4260
     agaactgggt accagtaagt ttcaaatgac tatggagtct tggcttaagc aaaaagcctt      4320
     ctattcaaca gatgagcttc tgcacagtga aatgcatgac ctcacagtat aaatttaaat      4380
     katgattctg tgtatttttt taaataaata ttcacatata tctttgtata aaatgtactg      4440
     tatattcttg tatattatat aatttgtaaa ttgtagtact gttaaaatcc gattctatgc      4500
     atttttataa aacatatatt tttgtataaa atatattgtt tatttttgta tattatataa      4560
     ttcgtaaatt gttgtactgt taaatcaaac ataagtatat aatgtatgat gatgtcttat      4620
     gcaactgact gttgtctaca gacaaataaa tgaattgaat tgaat                      4665
//
ID   Daphne-45_LMi repbase;    DNA;    INV; 4342 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-45_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4342
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 174-174 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(556..786,820..1251)
FT                 /product="Daphne-45_LMi_1p"
FT                 /translation="RQHQSKIFSDSHGREIAKILCYRHSIQATGIVKPGAP
FT                 IQEVVKNIETENYRNIVVIAGANNVYKNHLCSATRNLRKYLEFHIGMTLEG
FT                 HVNMEIKKANRQYSKICKAYQNAHFISMESMQRDCYMKHGMHLNNRGKKFL
FT                 CQNISMLLEASANQGEVISVLPIPSGVXIEAQQEEKSKAAGQGPDTSSDXY
FT                 VKLDKMNLPTNLYGKCTTEDLLPTPSRIFFF"
FT   CDS           join(1681..1953,1932..2060,2011..2214,2208..2372,
FT                 2315..4033)
FT                 /product="Daphne-45_LMi_2p"
FT                 /translation="MYRSPKGCINIFLEKMDMLLSVLSNIRWLHYDIAIGG
FT                 DLNADFDVTKYKCSVAELENLLRQYNLHHVNNRPTRNEACLDNIFVNFKTT
FT                 EDSLQDHRRLMKVIVFPFSDHDSVSLNYVNRSILNGAFQADLSQQLIEVSL
FT                 MEHFKQTCPNSCDYQTHTEDKIITFCNSLADRDWFGHCSDDGHYTSNNDLP
FT                 AKIVFDRFFKHSAFLTLFNSSIPVKKIEITDSGHKTRSQKRQNMWYTKQLT
FT                 DLKKDKLCYCPIYTAVTTDRSKKRQVMLLSNIYSCLKSDYAKSAYVECRNE
FT                 YKKAILLAKKTYNAKNIHNSTNKCKTAWKIINSAATNTKKEKINIPPQKLN
FT                 EFFINSVKEIGDAIIKPDISPSELLSQNFCSQPPNTSMLTFSEVSPGYVRR
FT                 VIKQLKSSNSLDIYDISCSLLKKVSDCIVYPLTHCINKCLLEGYFPDELKL
FT                 SRIVPVYKKGDKNSPSSYRPISIVPALSKVIECIIYQQLSTHFENLGLING
FT                 AQYGFRKKLLTVDAIDTVVRYILKVFEDKGFAQVSFCDLSKAFDCVEHTTL
FT                 LEKMEFYGIKENSLKLLKSYLKNRKQVVCVGKEMSNIENVKVGVPQGSVLG
FT                 PFLFLIMINDLPSFIRSTTVLYADDTTFLHSSNNLCELKTCTENTLSHAAH
FT                 WFRANGFLLNENKTQQILFTLRDKPLSDDPSSVKFLGVYLDDKLSWSQHIN
FT                 YISAKLSRVIYLLRQLRNCVPETYVRSSYFAFFQSILTYGIILWGNCSHIH
FT                 DILILQKKAIRIITNSSHKAHCKPLFTEHKIMTVINLYIYYVLIYTKKNLQ
FT                 DVKCRENVHSYNTRSIRHIYTPYLCQNQ"
XX
SQ   Sequence 4342 BP; 1598 A; 762 C; 766 G; 1214 T; 2 other;
     tggcgtccgg agcagttgtt tgtggtgata aagtgaataa aagttatatt tgtgcagtga        60
     aaaatggaag aaatacaatt ataacagtga aatagtaagc taatgaacgt gtatcaagtc       120
     tacgacgtga attgtgcgtt taggaaatga aaatgccgaa ctgagaaagg tgcgtagtag       180
     gcctaatgtt cttgatcgac aaaacaagca aaacgccgat tgggagccag ggggcacggt       240
     agaaagtggt gaaaaagtaa taaaaacaac aaatgcagtg gaccgcgtta ataaaagcag       300
     tccggtgtcc taccgacaat aaacgagtgc actgaagtgg atataacggc caaaacagca       360
     cggaaacaag aatttactag ccaaaaagaa ttgttcatgt gaaacccagt gactacaaaa       420
     accctgtggt aataaataat cgttttcatg cacttgattc agatatacat gcggaatcca       480
     cggaaaactg tgaaacaaca acatgcctga ttacatagta taagagcact gccagaaaat       540
     tatcaataaa catgaagaca acatcaaagt aaaatatttt ctgatagcca tggacgtgaa       600
     attgcaaaaa tattatgtta cagacatagt atacaagcaa ctggtattgt caaaccaggt       660
     gcacctattc aagaagtcgt aaaaaacata gaaactgaaa attatcgtaa tattgttgtc       720
     atagctggag ctaataatgt ctacaaaaat catctctgca gtgcaacgcg aaacctaagg       780
     aaatattaaa ttctacagaa gacaaatcag tctttgtagc tggaattcca cataggcatg       840
     actttggaag gtcatgtaaa catggaaatc aaaaaagcaa acaggcaata ctcaaagatt       900
     tgcaaggcct accaaaatgc acattttata agtatggaat ccatgcaaag agactgttac       960
     atgaaacatg gcatgcacct aaataacagg ggcaagaagt ttctgtgtca aaacattagc      1020
     atgttgctgg aagcatctgc caaccaagga gaagtaattt ctgttcttcc aattccttcc      1080
     ggtgttttka ttgaagcgca acaagaagag aagtccaaag cagcaggtca aggaccagat      1140
     acatcatctg atwtttacgt gaaactggat aagatgaact tgccaacaaa tttgtatgga      1200
     aagtgtacta cagaagattt gctgcccacc ccaagcagaa tctttttttt ttaattaaaa      1260
     ggcaacagag gcagaaatcc aaaagataag ttttgtaaaa agtttgaaag caatcaccac      1320
     aatggtagtg tgtatgcagt aagagtgtaa acttagatct taaaatatgc taccttaatg      1380
     ttcaaggact gagagacaaa gaacttatca tcaatcaatt ggctagaaaa tcaatttgac      1440
     attttatgtc taagtgaaca ctgggcaaat gagaatgaac ttgctgttaa caaatttgac      1500
     aactttagta tagaaaatag ctactgcagg aaagaacaca ttagaggggg tgtggcaatt      1560
     tatgttaacc attcactcaa ttgcacaata accaaattgg acctagattc actgtgtgat      1620
     gaacaacact ttgaagttac aggtgtaatc atcaatagtc ataaattaat tgttgtgtca      1680
     atgtacagat caccaaaggg atgtattaac atatttttag aaaaaatgga catgctgctt      1740
     agtgtattaa gtaatattag atggctacac tatgatattg caataggagg ggatttgaat      1800
     gctgattttg atgttactaa atataagtgt agtgttgcag aattggaaaa cttattaaga      1860
     caatacaatt tacatcatgt taataacaga cccacaagaa atgaagcatg tttagataac      1920
     atttttgtta acttcaagac cacagaagac tcatgaaagt tatagtgttc ccattctctg      1980
     accatgactc tgtatctcta aattatgtaa atagaagtat ccttaatgga gcatttcaag      2040
     cagacctgtc ccaacagttg tgattaccag acccatactg aggataaaat cattacattt      2100
     tgtaattcac ttgctgacag agactggttt ggccattgta gtgatgatgg acattacaca      2160
     tcaaataatg acctgccagc caaaatagta tttgacagat tttttaagca ttcttgaccc      2220
     tatttaacag tagtattccc gtaaagaaaa tcgaaataac tgacagtggc cacaaaacta      2280
     ggtctcaaaa gagacaaaat atgtggtaca ctaaacaact gacagatcta aaaaaagaca      2340
     agttatgtta ctgtccaata tatacagctg tctgaagtct gactatgcta aatcagctta      2400
     tgttgaatgc aggaatgagt acaaaaaagc tatcctgcta gctaaaaaga cctacaatgc      2460
     caaaaatatt cataattcca ccaataaatg caaaactgct tggaaaataa ttaacagtgc      2520
     tgccacaaat actaaaaaag aaaaaattaa tatcccacca caaaaactta atgaattttt      2580
     tattaactca gtgaaagaaa taggtgatgc tattatcaaa ccagacatta gtccatcaga      2640
     gctactctct caaaattttt gtagccaacc accaaacaca agtatgctaa ccttctccga      2700
     agtatcacct ggatatgtac gaagggtcat aaaacaactg aaatcatcaa acagtttaga      2760
     tatatatgac atatcatgca gcctattaaa aaaagtgagt gattgcatag tgtacccttt      2820
     aacccattgc ataaacaagt gtttacttga gggatacttt cctgatgaac taaaactgtc      2880
     taggatagtt ccagtataca aaaagggtga taaaaactct ccgtctagtt acagaccaat      2940
     ttctatagta cctgcactct ccaaggtaat agaatgtatc atataccaac aattatcaac      3000
     tcattttgaa aatctagggc taatcaatgg tgcacaatat gggtttagga agaaactgtt      3060
     gactgtggat gcaattgaca ctgtagtcag atacatcctc aaggtttttg aggacaaagg      3120
     ctttgctcag gtctcatttt gtgacctaag caaggccttt gactgtgtcg agcacacaac      3180
     actactagaa aaaatggaat tctatggcat caaggaaaac agtctcaaac tattaaaatc      3240
     ctatttaaaa aaccgtaaac aggtagtttg tgttggcaag gaaatgtcaa acatagaaaa      3300
     tgttaaagta ggtgtgcctc agggatctgt actgggcccc ttcctgttcc tgattatgat      3360
     caatgatctg ccctcattta ttagatccac cactgtatta tatgccgatg atactacttt      3420
     tctacatagc agtaacaatc tttgtgaact taaaacctgt actgaaaata cactctctca      3480
     cgcagcacac tggttcagag caaatggatt cttacttaac gaaaacaaaa ctcagcagat      3540
     tctcttcact ttaagagaca agccactatc tgatgaccct agttctgtta agttcctagg      3600
     tgtttattta gatgacaagt tatcctggag ccaacatata aattacatta gtgctaagct      3660
     atctagagta atttatttat taagacaact tagaaattgt gtacctgaaa catatgtcag      3720
     atcatcttac ttcgcatttt tccaaagtat attaacctat ggcataatct tgtggggtaa      3780
     ttgtagccat atacatgaca tactaatatt gcagaagaaa gccattagga taattacaaa      3840
     ttcgtcacac aaggctcact gcaaaccctt gtttactgaa cataaaatta tgacagtaat      3900
     aaacctgtat atatactatg tcttaatcta tacgaagaag aacttacaag atgtgaaatg      3960
     cagagaaaat gtacacagtt acaatacaag aagcatcaga cacatatata cgccttacct      4020
     atgtcaaaat caataaatag ctatgaggtc atagggcaca aactatttaa taagctgcca      4080
     catgctgtac aggatcttcc tgaactaaca ttcaaagaaa gactgcatga atggttactg      4140
     cccacccatt ctatgacatt aatgaattct tcaactgcaa aaaattagta attcaatagc      4200
     tgacctactg tgtattgttg taataaatta taatatgcta attagtcaat actttatcac      4260
     actgtattat taaatgtatt ttcatttgac gttgtctatt gctataatgg cctaaacaat      4320
     aaaatcttta ttattattat tt                                               4342
//
ID   Daphne-46_LMi repbase;    DNA;    INV; 3594 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-46_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3594
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 175-175 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1260..2102,2099..2593,2503..3327,3331..3498)
FT                 /product="Daphne-46_LMi_1p"
FT                 /translation="MVSLSNYDWSHIFNNNAHDSANTFFDRFFHTFLNIFE
FT                 TNCPQYKCKVNPKSNSNKHRDKNPWYTAQLANMKSRLLLYRDSYRLQKTDM
FT                 AKQRYSRAQKDYKHAVNEAKKQHNLVSIESSKNKCKKAWTIINSVSKSKQK
FT                 VDVVISADEFNNFCIKSVNQISENIVRPHETVADLIKCHNVNYTLKDKFLL
FT                 SEVTPDVVLTIVNNFRPSDSVDIYGISCNMLKKIIGYIVYPLTKCINKCLI
FT                 EGVFPDVLKLSRVVPIYKKGDRNCPSSYRPISLTPILSKFVLESIIYYQLC
FT                 DYLTCNNIISAVQFGFRKGKSTVHAIDSLIKKVLNAYEEKKFAQATFCDLS
FT                 KAFDCVEHISLLKKLVYYGIINSEVDNIFESFLSNRKQIVCIGKQRSQLAE
FT                 VKCGVPQGSVLGPLLFILMINDLPSYINTHSFSMPMIPLFSISAQTLICFK
FT                 LFTILYKYSLILYADDTTFFNISSDFDMLQTVTNDTLSQASVWFRANGFLL
FT                 NESKTQKIVFSLRDLPVEDFIDSVKFLGIVIDSKLSWEPHIKYIXTRLSRV
FT                 VYLLRNLKNHVPAAYVRSAYFAFFQSIISYGLLIWGNSSHVQDILVLQKKV
FT                 IRIITNSDKLAHCKPLFINLKILTVINLYIYTALLHIKSNLSEYQRRGDVH
FT                 SHGTRNSSHLDIPYYRLSKSLNSYEVVGMKMFNKLPQEWVEAPLDLFKHKL
FT                 YCWLAANPCYSLNEFYECKISWYLLGECTIISLMESFMMQCFKLYYFKYLI
FT                 LWKTYSDLLIFALCKVICIYALPYVK"
XX
SQ   Sequence 3594 BP; 1240 A; 560 C; 616 G; 1172 T; 6 other;
     agtttttctg gmtggatcaa atgatgtagc gasaaatgaa ggaaaagact tgttgttatc        60
     attaaggaag aagctgcagg aactacaaaa tacaaaaatc ctcatctttt caacaccatt       120
     tcggcatgat cttaaatcct ggtcatgtgt gaatgtctaa gtaacgagag taaatgaaga       180
     aaatttgtaa acacgttaaa ttgttgcttt tgtaaacata attaacttag gtgaaatatt       240
     tcatacagst catkgcttcc atctaatcac tggaaagaag atgtgagtaa tgaatcataa       300
     atctagccat gagttattat acacaaatcg ataggtcaga tcaataccac ttagatttaa       360
     gggaaattct tttttagagg tagaaaaagg gctgagccaa ctggtttgcc cagattcaca       420
     ctggaagacc agattaaaga taagaataat ctaataaatg tttgtaatat tagagagaaa       480
     tatagcagta atgatgattg ccctcataac aacaattatt catcaacttt gtcatttaag       540
     ataggctatc tcaatattga aggtatgagt ggaaaacacg caattttaaa cgattttgca       600
     aatgagaact tatttgatgc attatgctta agtgagtatg ggtgtaaagg aaatgaaata       660
     tcttttcatg tattagatga tttccattta gttaacagtt ttagcagaga gcagcatatt       720
     cctggggggt gtgtcaattt acattaagaa agcattaata aattgtagta gtgaactaga       780
     tctagggttc ttgtgcagtg agatacattt tgaagccaca ggtgtatgta tggatmattt       840
     aaaattgtat tgtagctctt tatagatcac ctagtggtga tccactaata tttttaagaa       900
     aaacttgaga atttattcaa tttctttctc agacctcagt ggaagaaata tagttagtga       960
     ttggtggtga catcaagctg tatttgatgt aaataaagat gcacacactg taaatattta      1020
     aaaccgttac gacaattcaa cttcaatttt acaaactgca acagtctgct tgtcttgaca      1080
     actacttaca aatgtaatag agagttactg tcctcagatg tagctgtttt tgatttctcg      1140
     gaccatgacc cagtttgggt aaaaataagt accgataggc ctaatatgca gtataaggag      1200
     ttcaaagagc ctaaatagtc atcacaagac caataacaca ggaaaaactt tcctaattca      1260
     tggtttcact cagtaattat gattggtcac atatatttaa caataatgct catgactctg      1320
     ctaatacatt ttttgataga ttttttcata ctttcttaaa tatttttgag accaactgtc      1380
     ctcaatacaa atgtaaagtt aatcctaaaa gtaacagtaa taaacatagg gataagaatc      1440
     catggtatac tgctcaacta gccaatatga aaagcaggtt gttgttgtat cgagattctt      1500
     acagacttca gaaaacagat atggctaaac aaaggtactc aagagcacaa aaggactata      1560
     agcatgctgt taatgaggcc aaaaaacaac ataacctagt cagcattgag tcatcaaaaa      1620
     ataaatgcaa aaaagcatgg actataataa attcagtgtc caaaagcaaa cagaaagttg      1680
     atgtagtaat atcagcagat gaatttaaca acttctgtat aaaatctgtt aatcaaatta      1740
     gtgaaaacat tgtgaggcct catgagactg tagctgatct tattaaatgt cataatgtaa      1800
     actacaccct gaaagataaa ttccttttat cagaggtcac accagatgtt gttttaacta      1860
     ttgtaaataa ttttaggccc tctgacagtg tagatatata tggtatttct tgtaatatgt      1920
     taaaaaagat aattggctac atagtatatc ctcttactaa atgtataaat aaatgtttaa      1980
     ttgaaggagt attcccagat gtattaaaat tatctagggt agtgcccatt tacaagaaag      2040
     gagacagaaa ttgcccatct agctatcgcc caatatctct gacacctatt ttatctaagt      2100
     tttagaatcc atcatctact accagttgtg tgattatttg acatgtaata acattatttc      2160
     tgctgtacaa tttggcttta ggaagggcaa atctactgtt catgccattg actccctgat      2220
     taaaaaagtg cttaatgctt atgaagaaaa aaaatttgct caggctacct tttgtgatct      2280
     tagcaaagcc ttcgattgtg tggagcatat ttcacttctc aaaaaactag tttattacgg      2340
     aatcattaac agtgaagttg acaacatttt tgaatctttt ctcagcaacc gtaaacaaat      2400
     tgtttgtatt ggtaaacaga gatcacagct agctgaagtt aagtgtggtg tgccacaagg      2460
     ttcagtttta ggacctctgc tatttattct aatgataaat gatttaccat cttatataaa      2520
     tactcactca ttctctatgc cgatgatacc acttttttca atatcagctc agactttgat      2580
     atgcttcaaa ctgtgacaaa tgacacacta tcacaggcat cagtctggtt tcgagctaat      2640
     gggtttctgc ttaacgagag caaaactcaa aagattgtat ttagtttaag agatctgcca      2700
     gtagaagact tcatagatag tgttaagttc ttaggtattg ttatagatag taaattgtct      2760
     tgggagccac acattaaata tattastaca aggctgtcta gagtggtgta cttgctaaga      2820
     aatctaaaaa atcatgtacc tgcggcttat gtaagatcgg cctactttgc tttttttcaa      2880
     agtattatat cctatgggct tttaatatgg ggcaatagct cacatgttca ggacatttta      2940
     gtacttcaga agaaagtaat tagaatcatt acaaactctg ataaacttgc ccactgcaaa      3000
     ccactgttta tcaacttaaa aatattaact gttataaact tgtacattta cactgcttta      3060
     ctgcatataa agagcaactt atcagaatac cagcgtagag gagatgtaca ctctcatgga      3120
     actagaaata gtagccatct tgacatacct tactacaggt tatccaaatc actgaacagc      3180
     tatgaagtgg tgggtatgaa gatgtttaac aaactgccac aagaatgggt agaagctcca      3240
     ttagatttat ttaaacacaa actgtactgt tggttagctg caaatccttg ctactcactt      3300
     aatgaatttt atgaatgtaa aatatcatag tggtacctgt taggagagtg caccataatt      3360
     tctttaatgg agtcatttat gatgcagtgt ttcaaattat actattttaa atatttaatt      3420
     ttatggaaaa cctatagtga cctattgatt tttgccctat gtaaagtaat ttgtatatat      3480
     gctttgccct atgtaaagta attctgtata tatgctgtat atttctatac atttgtaact      3540
     tgactttgtc aattgctgta acagctaaac aataaaattt catttattta ttta            3594
//
ID   Daphne-47_LMi repbase;    DNA;    INV; 3939 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-47_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3939
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 176-176 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1293..1730,1715..2236,2233..2577,2490..3650)
FT                 /product="Daphne-47_LMi_1p"
FT                 /translation="LSKHVKSYNLFFTNESPTRLQSCLDNLITNIHKSEFE
FT                 LGLFNVDHLSDHKGIWVKLITEKLNVDKEQIPYRYVRLLTDKHINTYRKEL
FT                 KLVDWNAVLFSPKNVDDAFRSFMNIISKKFDICCPKIRKQNEVRRPRHPTR
FT                 NRWFTPDMVYPRLMKLRLSVLDCYEKVKSGIADKATYNNLKKHYRLQIKIA
FT                 KCRANDYYIENSINRCKAAWKIIKAELGIDINRTETTNAVNITPDEFNQFF
FT                 VKAGNPAIIPASDELISTXTFTPNLEPISGNQFLRNYASTVPTFKWTQIQL
FT                 YDVIKSITKLGSTKSEDIYGLSNFVIKKKIADLVCNPLCILINWMYASGHF
FT                 PECLKRTVVVPIHKKGNKLCTNNYRPISLIVTVSKIIEYCIQQDICRHLSE
FT                 SNILTQSQYGFRSKLSTVKAVEDIVSFIQTSFEXKLSAHAFVQIINSESSR
FT                 RHCLFYTNLIRXKVICSCILVDLSKAFDSVNHAILLEKLWCYGIRDLELSL
FT                 ISSYLNDRKQTVVYNNKKSQYLEVTRGVPQGSVLGPLLFIIFINDLPSCMP
FT                 CKSVLYADDTTFISSGKDINKLELESKNYLXMSDAWFKSNELSINHEKTVN
FT                 ITFSLSNREVGCSDVKLLGIYLDSRLTWEKHTDQVCRKLSHATFLLTKLQT
FT                 CVTTPLLLNCYYAFFHCHLQYGILLWGNSVGAKKXFIWQKKEKKVIRSISG
FT                 VTNSKTSCRPLFKELKILTVPSLFIYHCLLNIKENLNNYTLREAIHQYKTR
FT                 QMKQIDMPTARLKKTQTSYEYLGIKLFNTLPVQAHHVSLNTFKIKTEKWLK
FT                 EKAFYNISEFQNSSKDDLMY"
XX
SQ   Sequence 3939 BP; 1401 A; 737 C; 657 G; 1134 T; 10 other;
     cacccgaaca acgtacagtg cttgaaaact ttcaagagac taccgaccag cagaacagga        60
     agaataagtc tatttgcagg cagtaaggcc gtagcttggc cgccgaattt cattatagaa       120
     gcagccacaa tataatccgt agattgatga aacccctgtc ccccgtgaca ataaatttga       180
     ggccgtttta tactcacaca ccaccaccca gcatctatct gcgttactga gtagactagg       240
     tgaaaaactg agtatggccc caagatgttc aaatgtgtgc ggtaaagtct atgtcaggga       300
     cttaagtcat cggtccaaat acaattacct atgctacaac aaggccagtt atgttgatca       360
     aaagaagact gcacggcctg agagtcagaa actatagtgt tttctgttcc acatcgttat       420
     gacctccaga gtggtcgtgt gtaaataacg aggtgtgtat cgcaaatcag gagatgcaaa       480
     gtattgtgca agatttaaaa acgtaacttt cgttgacata agcagcatag aagagaatgc       540
     cacacagtcc atggtcttca tctaaacagt taggcaagcg cctgtaataa cacggatcca       600
     agaaatagtg gacaggagcg atgtgcagtt ttgtgccaca gaggctggac aaaaatcgtg       660
     aaccgttgga agactcagca acagaatgcc aagttagtga agcagtaccc acgcaagaca       720
     agagtgatgc ttttttagga caatacgtaa attgctgcac cagtgcacag actatccaat       780
     gctcctcctt gctccatcac actaaatctt cctccttgca ataacwgctc tattctattt       840
     gtacacttaa atatctggtc cctaaaatat aaggctgatg aacttggcat ccttwtgaaa       900
     aataatagaa gatgatactg tgtctaaatg aacatcggct aaagatgaag acattgcatt       960
     gtatgttcca ccaggttttc atatagttac aagttactgt agaacaaatt gttatggagg      1020
     ttcctctcta tatataagca atgatttaga cctaagatgt attatatgga cattaatgac      1080
     ttatgtatta aaagtgtttt tgaaacagct gttatgcttt acccacagtt acacttgtag      1140
     ttgcttctgt atatcatgcc cctggcaatg atatagagaa atttactgaa tgtttagaaa      1200
     agcttattgt ccagatacag aaatattcca aatatattwa ttkttggtga ctttaacttt      1260
     gatgttagaa aaaatacaac taaaattaat aacttagcaa acatgttaag tcatataatc      1320
     ttttctttac aaatgaaagt cctacaaggc ttcaatcctg ccttgataac ctcattacaa      1380
     atatacataa aagtgaattt gaactaggat tatttaatgt tgatcaccta tcagaccata      1440
     aaggtatatg ggtaaaatta attactgaga aattaaatgt agacaaagaa caaattccat      1500
     accggtatgt taggttatta actgataagc atattaacac ctataggaag gaactaaaac      1560
     tagtagactg gaatgctgtc ttattctctc ccaaaaatgt tgatgatgcc ttcaggagct      1620
     tcatgaatat tatctcaaaa aaatttgata tttgttgccc caagatcaga aaacaaaatg      1680
     aagtcagaag acccagacac ccaacacgaa atagatggtt tacccccgat taatgaaact      1740
     aagactttca gtacttgact gctatgaaaa agtaaaaagc ggcattgcag acaaagccac      1800
     ttacaacaac cttaaaaaac attatagatt acaaataaaa atagccaaat gcagagcaaa      1860
     tgactattac attgaaaatt caattaatag atgtaaggca gcttggaaaa ttataaaagc      1920
     agagttgggt atagacataa atcgtacaga aaccactaat gctgtcaata tcacaccaga      1980
     tgaatttaat caattttttg tcaaggcagg aaaccctgct ataatcccag cttctgatga      2040
     acttatttcc acctmtacgt tcactcctaa tctagagccc atttctggaa atcagtttct      2100
     tcgaaactat gccagcactg tgccaacttt caagtggaca caaatacaac tatatgatgt      2160
     kattaaatca ataacaaaac taggaagtac aaaatctgag gacatctatg gcctatctaa      2220
     ttttgtgatt aaaaaatagc agatcttgta tgtaaccctc tttgcatact aataaactgg      2280
     atgtatgcta gtggtcactt tccagagtgt ctaaaaagaa cagttgttgt ccctattcat      2340
     aaaaagggta ataaattatg cactaataat tatcgtccga tttcactgat agttactgtc      2400
     tccaaaataa tagaatactg catacaacag gatatctgca gacatttatc tgaaagtaat      2460
     atactgactc aatcgcaata tggttttagg tccaaattat caacagtgaa agcagtcgaa      2520
     gacattgtct cttttataca aacctcattc gaawcaaagt tatctgctca tgcattctag      2580
     ttgacttaag caaggcattt gactcagtga accatgcaat actacttgaa aaactctggt      2640
     gttatggaat cagagacttg gaactctccc tcataagctc ctatctcaat gacaggaaac      2700
     aaactgtagt ttacaataat aaaaaatctc agtacttaga agtgactcga ggcgtgcccc      2760
     agggttccgt gctcggtccc ttgttgttta taatattcat aaatgatctt cccagttgca      2820
     tgccctgtaa atccgtactt tatgcagatg acactacatt cattagctct gggaaagata      2880
     taaacaaatt ggaactggaa agcaaaaatt accttaawat gtctgatgca tggttcaaat      2940
     ccaatgagct atccatcaac catgaaaaga cagtgaatat tactttcagt ttatccaaca      3000
     gagaagttgg gtgctcagat gttaagctac ttggcatata ccttgactcc agattaactt      3060
     gggaaaaaca tacagaccaa gtatgtagaa agctctcaca tgctacgttt ttactgacta      3120
     agctacagac atgcgtaaca acacctttat tactwaactg ttactatgct ttctttcact      3180
     gccatctgca atatggcatc cttctatggg gtaattctgt aggggccaaa aaaawtttca      3240
     tctggcaaaa aaaagaaaaa aaagttatca gatctatttc tggagtaaca aactctaaaa      3300
     cttcctgcag accacttttt aaagaattaa aaatattgac agtcccatca ctctttatat      3360
     atcattgcct cctaaacatt aaagaaaact taaataatta caccttacgg gaagctatac      3420
     accaatataa aactaggcag atgaaacaga tagatatgcc cacagctaga ttaaagaaaa      3480
     cacagactag ctatgaatat ctgggcataa aattatttaa tactttacct gtacaggcac      3540
     atcatgtctc acttaatacc tttaaaataa agactgaaaa atggctgaaa gaaaaggcat      3600
     tctacaacat ttctgaattt caaaacagtt caaaggatga tttgatgtac taaataaccc      3660
     acaaactatt ttgtatttac catagtatgt ctacaaacaa tttggtaatt taggatacta      3720
     ttttttatgt gctgtaaaac taataaatct acttgtaatc ttaaagcaaa tgtgataaat      3780
     gtaaatggca gtattataat gttctataca ttacttatat caatgggtaa tatatcaatg      3840
     taaaaatctg tataataatg tcttatatat tacatatgta tatatggaac atgccttatg      3900
     cagcctaaag ctgtcgcacg ggcaaataaa taaataaat                             3939
//
ID   Daphne-48_LMi repbase;    DNA;    INV; 5174 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-48_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5174
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 177-177 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1131..1850
FT                 /product="Daphne-48_LMi_1p"
FT                 /translation="MHLRHTNVILVGIPLRYDLENWSCVNEETRRTNRKIA
FT                 KIVKSFQNTQFIRAPENREWYTSHGLHLNAKGKEEVARTLLTTISTKSKPQ
FT                 PAIPLKWKTSVETDHMPKNQPATALETNNNDVMRAGMSNEVKTSVCSNNIY
FT                 KNITTSALRRSTRPKASRIQSDFLVWHSKSKYKHPRSPISISPCQSVRTTD
FT                 IGTSATSETAATLTQSTGGSPQLQLLQHQPALKFLYLCEEGRHLSILYDY"
FT   CDS           join(1862..2398,2395..4719)
FT                 /product="Daphne-48_LMi_2p"
FT                 /translation="MPCEKAAPEIQHGQRTGRNFPLAPRPSTYVSDPIKCS
FT                 TEEDNQSHQSETPLKLVHLNIQYLRNKLNILQIFVNEHTPHILVLTEHGLK
FT                 SDEIIYYKLEGYILANSYCRQHHKGGGVAVYISDNLECKKMNYLEQYSKEG
FT                 LIEVSGIELLTNGCRKLMRKHKIIGIYHPPKAEVGSFLDIHMSKIVGCSGP
FT                 SELTILGDLNIEAKACNITNMRLTDTLNSYNLVNVVNSDTRITKSSSSRID
FT                 YVIVDKHVKDNVTCRNVDFHYSDHKCQLVEYENTSIPNVTKIIENRRILKE
FT                 XNIYDLKTKLAIEDWEQVYQTKGSEYKWTTFYNIILSHFDSCCPVRKIQRV
FT                 LTHGKDGKNTKFTLPANMIKLRQRIHDLDVLHKSTKLEIFKVKYKETKKTF
FT                 QKELSNLRKQMYSSQIVKSSNIAKESWKIINKFRKAIPEPETGVMNIRHEG
FT                 KIVKDPNEVCNIFNKYFISATINPVNPTKASNKKNLCPTEDPPFEFKEVTE
FT                 KEICRIINNLKNKYSSGWDGLCSVVIKKCGKELGKVITHLINCSIREHTFP
FT                 DVLKWGTVKPVHKKGSKEEVSNFRPISLIPVFSKVFEVVLLMQLSDHFAKN
FT                 NLLTETQHGFQKNRSTVTAITEFIHEVYNDLDQGMQTAGIFLDLTKAFDSV
FT                 NHELLLSKLESYNLNVTSIQLLTTYLINRKQCTKLTYKINDQVVNSQSRYE
FT                 TVTQGVPQGSVLGPFLFLVYINDIEPPHKSQLVTYADDTSLLFVGKQTNEL
FT                 TMVAAEGLDQITNYFQEQGLKVNISKSQLMPFKLAQSNQITVRNIGGIEAV
FT                 DTEDCRFLGIYLDTNLHWVNHINHICNKISSALYLISQLSKIVSNQVLKTI
FT                 YYGTIFPHMNYGIEIWGCAADIHMDRILKLQKRAVRIIHGIGYRDSCREIF
FT                 VQHKYLTVYSLYLYKLITFLWHSKIKQTNAQIFIFIIQETRTAIIDNEPN"
XX
SQ   Sequence 5174 BP; 1994 A; 935 C; 918 G; 1324 T; 3 other;
     atgctttcta agtttacgaa aatcttggaa atactaagac gtgagatttt gcatttaaga        60
     aatgaaaatc tggagctact aagcgtacct ttcaatatgg cgtcaaatgt aaataattcg       120
     aattccttga caaataaaag taaagtgtcc ataaacattt gtgaaatgtg tggaaaaaac       180
     caatcgtaaa tagtgacata acgtgtttag cttgcacaat aacgcgaaaa ttacagaaat       240
     gagacaggaa atttaaagaa aatcgagtgt gtgccaactt catctacgat caaagtgcaa       300
     cgttaggccg aaatcttcag gtatgtctac tgtggaaatc gtgtcttcaa aggaattacg       360
     tgcataaaat gtaaaacagt gtttcatttc tcttgtgcga acgtaaattc ggaacaaaaa       420
     atttggttct gcaaggacga tgagctgggc ctaaacctga ataacaaaga cagtagttat       480
     gagataatca atgtactaac tgacgaagtt aaagaattaa aaagcagaac tgaagagctc       540
     ccatgacaga agttacaaaa tgacagtgaa atattggaat atgcaggccc aaaatgtttg       600
     gcgctatttc atgtgaaagt cgcagttcat gaaagaaacc cttgcgagaa cagatcagta       660
     tattatgcct atatgcctaa aaaacattta aatctatgaa aagaactggg aatgactctt       720
     cattaatcac catgacaaaa aacaggtttg aagtgcttca aaaaggtgaa aatcagaaga       780
     acaaaatagt gaggaaaatc atgccacagt taaaggatac aaaatgaaca gcaagaaaca       840
     ttcgcccagc agatatagca acatcagcaa cttgcctcaa cacaaaaaaa ataacagtgt       900
     ttgcagacag tcatgggcag tcaattgcag cwaacttact gcaccaaagc caaaataatt       960
     atgtaatcca aggaaatgtt atcccaggtg caccattaac tamagtgtta gaaagatgca      1020
     ataatctaca taacttcaca gaaaatgata cagctgtcat ctggggaggt acaaatgatg      1080
     tggccaaaaa tgaagctaat aaggcattaa acgctttaac atcaacatta atgcacctcc      1140
     gacacacaaa tgtaatttta gttgggatac ccctcagata tgatcttgaa aactggtcct      1200
     gtgtgaatga agaaaccagg agaacaaata ggaaaatagc taaaatagtg aaatcttttc      1260
     aaaataccca attcataaga gcccctgaga atagagaatg gtacacgtct catggactgc      1320
     acctaaatgc caaaggaaaa gaggaagtgg ccagaacatt acttacaacc atctccacaa      1380
     agagcaaacc acagcctgca ataccactta aatggaagac ttcagttgaa actgaccata      1440
     tgccaaagaa ccaaccagca acagcactgg aaactaataa caatgatgtc atgagggcag      1500
     ggatgagcaa tgaagtaaaa acatcagtat gcagcaacaa tatatacaaa aatataacca      1560
     caagtgctct gagaagatcc acaagaccaa aagcatcaag aatacagagt gactttcttg      1620
     tgtggcacag caaatcaaaa tacaaacacc caagatcacc tatcagcata tcgccatgtc      1680
     agtcagtgag aacaacagac atcggaacat cagcaacttc agaaactgca gccacactga      1740
     cccagtcaac tggtgggagt ccacagcttc agcttctcca acaccagcca gctctgaaat      1800
     ttctctacct gtgcgaagaa ggaagacacc tcagcatcct ctatgactac tagaccgaca      1860
     gatgccatgt gagaaagcag ctccagaaat tcaacatggt cagagaacag gtagaaactt      1920
     tcccttagct cctagaccca gtacctatgt aagtgatcca attaagtgct caacagagga      1980
     agataatcaa agtcaccaat cagaaacacc tctaaaactt gtgcatctaa atatacagta      2040
     ccttagaaat aagcttaata tattacaaat ttttgtaaat gaacatacac ctcatatatt      2100
     agtgctaact gaacatggat taaaatcaga tgagattatt tactataaac tagagggcta      2160
     tatcctagca aatagttatt gtagacaaca ccataagggt ggtggggtag cagtttatat      2220
     cagtgataat ttggagtgta agaaaatgaa ctatttagag cagtacagta aagaaggatt      2280
     gattgaagtg tcaggcattg aactactcac caacgggtgc agaaaactta tgagaaagca      2340
     taaaattatt ggtatttatc acccaccaaa agctgaggta ggaagtttcc ttgacatatg      2400
     agtaaaatag tgggatgttc aggtcccagt gaactcacta tacttggtga tctgaatatt      2460
     gaggctaagg catgcaatat tactaatatg aggttaacag atactcttaa ctcatataat      2520
     ctagtgaatg tagtcaactc tgataccaga ataacaaagt cctcatctag cagaatagat      2580
     tatgttatag ttgataaaca tgttaaagac aatgttacat gcagaaatgt ggatttccac      2640
     tactccgacc acaaatgtca gcttgttgag tatgaaaaca caagcatccc aaatgtaaca      2700
     aaaattatag aaaatagacg aattctaaag gagtstaaca tctatgacct aaaaactaaa      2760
     ctagccattg aggattggga acaagtctat caaacaaaag ggtcagaata caaatggacc      2820
     acattctata atattatact gagccatttt gactcttgct gccctgtgag gaaaatacag      2880
     agagtactaa cccatggcaa agatggaaaa aacaccaaat ttacactacc agcaaatatg      2940
     atcaaactta ggcagaggat ccatgacctg gatgtgttac ataagtcaac aaagctggag      3000
     attttcaaag ttaagtacaa agaaaccaag aaaacctttc agaaagagct ctcaaacctc      3060
     agaaaacaga tgtacagtag tcaaatagtg aagtcatcca atatagccaa ggagtcatgg      3120
     aaaataataa acaaattccg gaaagccatc cctgagccag aaactggagt tatgaacatc      3180
     agacatgaag ggaagatagt taaagatccc aatgaggtct gtaatatttt taataaatat      3240
     tttatatctg ccactattaa tccagtgaat cccacaaaag caagtaataa gaaaaatcta      3300
     tgccccactg aagatccacc ctttgaattc aaagaagtga cagaaaaaga aatatgcagg      3360
     atcataaaca acctaaagaa taaatactca tcaggttggg atggtttgtg cagtgttgta      3420
     attaaaaaat gtggtaaaga attgggtaaa gtaataacac atctcattaa ctgtagtata      3480
     agagaacaca cctttccgga tgtactgaaa tggggcacag tgaaaccagt acataaaaaa      3540
     ggctctaagg aagaggtttc taacttcagg cctatatcgt taataccagt cttcagcaaa      3600
     gtatttgaag tggtgctgct aatgcaactt agtgatcatt tcgcaaaaaa taacttactg      3660
     acagagactc agcatggctt ccaaaagaat cgcagcactg ttacggcaat tacggagttt      3720
     atccatgaag tgtataatga ccttgatcaa ggaatgcaaa cagcaggtat atttctagac      3780
     ctcactaaag cttttgattc tgtaaaccat gagttacttt taagcaaact tgagtcatac      3840
     aacctaaatg tgacatctat tcaattgctg acaacatacc tcattaatcg taaacagtgt      3900
     acaaagttga cctacaaaat caatgatcag gttgtaaata gccaatccag atatgaaaca      3960
     gtcacacaag gtgtacccca gggctctgtt ttaggccctt ttctttttct agtgtatata      4020
     aatgacatag agccgcctca caaatcccag ttagtgacat atgcagacga tacctcactg      4080
     ttatttgttg gcaagcaaac caatgaatta acaatggttg cagcagaagg actagaccaa      4140
     ataacaaatt actttcagga gcaaggtttg aaggtcaaca ttagcaaatc acaattaatg      4200
     ccatttaaac ttgcacaatc aaaccaaatc actgtccgta atataggtgg aatagaagca      4260
     gtagacacag aagactgtag atttctaggt atctacctag atacaaatct tcactgggtt      4320
     aaccacataa atcatatatg taataaaatc agcagtgcac tatatctaat tagccaattg      4380
     tcaaaaatag tctcaaatca ggtattaaaa acaatttatt atgggacaat atttcctcac      4440
     atgaattatg gaatagaaat atggggctgt gctgcagata tacacatgga cagaatacta      4500
     aaactgcaga aaagggcagt aagaattatc catggaattg gatatagaga ctcatgcaga      4560
     gaaatatttg tgcaacataa atacctgact gtctactcat tatatcttta taaattaatt      4620
     acatttttgt ggcacagcaa aataaagcaa acaaatgctc agatattcat attcataata      4680
     caagaaacaa ggactgctat tatagacaac gaaccaaact aaaaacaaca gaccatagcc      4740
     catatataaa tggcctgata tggtacaaca aactgccaag ctctataagg agccacaaag      4800
     gaaatacatt caaaataaaa ctgaaatcat tcctaattga aaagtgccta tactccttaa      4860
     atgaatatta atgtgaaaca aactgatacc tgtatttttt gtgtaacttt gaatatatgt      4920
     aataattatt tatttttgtg taacttgtga atatttgtaa aaattattta tttttgtata      4980
     actcctgaaa atatgtaata tttattaaga acaccatttc tgttgtattc actactgaga      5040
     atactgatac ttgtatcatc tacttgtaat cattcaattt ttttgtagcg attttctgta      5100
     tgtaaaaata ttatgacgtt tgcaaaagtc accggatggt ggctccatgc aaaaaaatac      5160
     aataaataaa taaa                                                        5174
//
ID   Daphne-49_LMi repbase;    DNA;    INV; 4213 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-49_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4213
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 178-178 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1319..2020,1932..3728,3698..4099)
FT                 /product="Daphne-49_LMi_1p"
FT                 /translation="MNICCIRNKLLELENFCNVEKVDVACISEHWLTEEQV
FT                 XYFVPQGYSVGDIMCRSKIKNGGALILVRDSLMFSKIDVSSFCTELDGEFS
FT                 CIRLAVEDTIIISLYRSPDGDVKIFLERFELLVRKVLKYKTKVIICGDFNI
FT                 EMINNDDNIQRTFFNTLRLLNLHCTNHRPTWKNACLDNIIVNLPRDTYDVR
FT                 IASEALADHEPLLLTLYSVNYLTRHFNQRKVQYYMDKRTERGIYLSTLSIT
FT                 LPDTSISAKFNTTWIRGQKEEYINLLIDRLADVNWDIVYFTQPGKVAGEIA
FT                 YDKFMKKLTEVWYSCSPLIKINPKRNQKRKRINWYTDELALIREEMLRLYR
FT                 TYKNSCKQGLEPDDIXYRAYLECKRNYKHKLTLAKKLACEQYIDGAPNKCK
FT                 AAWDIIKQESSQTHTQDVILDPEELNDYFVTSVSELKNKIKQNGIHALDLL
FT                 VAETHRKCTFSWNAVTPKDIIKAVAKFSNSRSMDSYWFSNYVIKKIIHLIC
FT                 QPLSFVFNMCIESGVFPSALKVAKVIPIYKKGDKHLPQNYRPVSIVPIFSK
FT                 VFEQLMYNQLNHYFTKNNLLSSRQFGFKQGKNTTTAVTEIINEVLNAFENK
FT                 ELVSVTLCDLSKAFDCIPLDTLLSKMAHYGINYPSLDLIKSYLSDRWQYAS
FT                 VKNRCSTLRETRTGVPQGSVLGPFMFTIATNDLPCHVGENAIVCYADDTTL
FT                 LNTHNNITELQHATDTKLELAMNWFTSNELLCNPDKTQKLILGLNTNVENK
FT                 YVKLLGFHIDSKLNWEEHISHVCKKIARVCYLMWKLTDAVTDEYLRVAYFA
FT                 LFQSHISYGILLWXHXCHVIEILKIXKIXSENLENXKNXIRIMSRAKQKEH
FT                 XRPLFIKHKITVVNLYIYTALLHVKSNLNEYSTREXIHPHNTRRKLDLXXP
FT                 RHRLAKTANSRQIMCLKLFNKLPESARLLPYNIFKNKIYDWLTKHPFYKME
FT                 EIFEINIFDISI"
XX
SQ   Sequence 4213 BP; 1526 A; 759 C; 803 G; 1112 T; 13 other;
     cagatggcgt cgatcggact tgtagatgta aattgctccg ataaaagtga caaaaacgaa        60
     gtaaatagtg gtaataattg taagttgtgc tacagaaagt cagaaagggt atccagtgta       120
     aatgttgcaa atggtggttc catgaaacct gctgcaaaat aaatataaaa atggtaacat       180
     gcgcagtgga ctacatctgg acatgtgagg catgtgtaat agaaacgtgc gaaaaaaaaa       240
     aagtatatag gcattataaa agacaaggat tctataattt gaatacttca aagcgatatt       300
     gaagactaca aaaaatttac tgagttggaa cgcaagtgtg caatttggag agcagcaata       360
     ctcgtagcct gcaagtaaac aaagatgatg tttcgtaact tatagttcat gcggaccaag       420
     aaacgcgaag cacctgggaa acaaggaaaa cttgctgctg aaaaaatagt gtaacaatag       480
     tatacgagga acagcattct aagaatgtas agcaagtact gctgtagtga aaaacgtgtg       540
     taaaagtgaa ccctcgaaac cacacatagg cctacaactg caacagataa ttctgctgtg       600
     actcaaaaac cgttacaaca gcggactgaa gtgaagatat tcggcgacag ccatgcacgt       660
     atgtctcgac gtgagtgttt cagctgttgt gaagcctggg gcaaagtttg caaacgttgc       720
     gagcagcgtc gaaaatgaat gtgccaagtc actaaaagtg actgtgttgt tcttattgcg       780
     ggactaacga cgtttaccga aattaggcta gtgaatttat aaaaaaactt atcgttgtct       840
     tgcagctctg acgactaaaa cttaatagtg atgaatgtgc ctatacgatt tgacctgcct       900
     gactggtctt ctgtgaacag tgaaattcgg cgaacaaata aaaaattgag cacttctgtt       960
     cgaggtatca aaatgtgaaa cttctcaacg tcagcaacta cgaaaaagct tgtttcacac      1020
     aatggacaac acctaaatcg ggctggtaag aggagactgc atcagatgta agagaactgt      1080
     tgatgaagtg atacaagtaa gtagctgtgg aaataaacaa tctatcggcc taaattatgt      1140
     catacaggaa aactagtgga atgggccaat tccaagcgaa ttcggcccaa cattaacaat      1200
     tcagagcaag ctttaaatac agaactgaaa gttaatctac cttgctatca aggatagttt      1260
     taaagaccct ctaccaaaag tacctcaggg agtccaacaa actgttactg tagtgcaaat      1320
     gaacatctgc tgcataagga acaaactgtt agaattagaa aacttttgta atgttgaaaa      1380
     ggttgatgtt gcttgtatat cagaacactg gctgacagaa gaacaggtak actactttgt      1440
     tccacaaggt tactctgttg gagacattat gtgcagaagt aagataaaga acggaggtgc      1500
     tctaatactg gttagagata gtttaatgtt ttctaaaata gatgttagct ccttttgtac      1560
     tgagctggat ggagaattta gctgtataag actagctgta gaggacacca taatcattag      1620
     cttatataga tctccagatg gagatgtaaa gatattcctt gaaagatttg agctacttgt      1680
     gaggaaagtc ttaaagtata aaacaaaggt cattatctgt ggggacttta acattgaaat      1740
     gatcaataat gatgacaata ttcagaggac atttttcaat accttaagat tgctaaattt      1800
     acattgtaca aaccacagac ccacatggaa aaatgcttgt ttagataaca ttatagttaa      1860
     tcttcctaga gatacatatg atgtcagaat tgctagcgaa gctctagcag accatgaacc      1920
     cctacttcta actctctact ctgtcaatta ccttaccaga cacttcaatc agcgcaaagt      1980
     tcaatactac atggataaga ggacagaaag aggaatatat taatttacta attgacagac      2040
     tagctgatgt aaattgggac attgtatact tcactcaacc agggaaggtt gctggtgaaa      2100
     ttgcatatga taagtttatg aaaaaactca ctgaggtatg gtactcctgt tcaccactta      2160
     taaaaatcaa ccctaaacgt aaccagaaaa ggaaacggat aaattggtac acagacgagt      2220
     tagccctaat tagggaggag atgctcagac tatatagaac atataaaaat tcttgtaaac      2280
     aaggacttga accagatgac attamttaca gagcctattt agaatgtaaa agaaactaca      2340
     aacacaaact taccctggcc aaaaaacttg catgcgaaca atacatagat ggtgccccta      2400
     ataaatgcaa agcagcatgg gacattatca aacaagaaag ttcccaaacc cacacacaag      2460
     atgtaatatt ggacccagaa gaattaaatg attactttgt gacctcagtg agtgagctga      2520
     aaaataaaat caaacaaaat gggatacatg cattagatct ccttgtagct gagacacaca      2580
     gaaagtgtac cttcagctgg aatgctgtca cccccaagga tattataaaa gctgttgcaa      2640
     aattctctaa ctccagaagt atggacagtt actggttttc taattatgta attaaaaaaa      2700
     taatccatct tatatgtcaa cccctctcct tcgtatttaa tatgtgtata gaatctggag      2760
     tattccccag tgcactcaaa gtggccaaag taataccaat ctataaaaaa ggagataagc      2820
     acctgcctca aaactaccga cctgtttcca ttgtcccaat attttccaaa gtctttgagc      2880
     agttaatgta caaccagtta aatcactatt ttactaaaaa caatctcctc tccagcagac      2940
     agtttggatt caaacagggt aagaatacca ccactgctgt tactgaaatt attaacgagg      3000
     tgttaaatgc ttttgaaaat aaagaactag tatcagtcac actttgcgat ctcagtaaag      3060
     ccttcgactg tataccgctt gacaccttgc ttagtaaaat ggcacattat ggcattaact      3120
     atccgtcctt agatttaatc aagtcgtatc taagtgacag gtggcagtat gcatctgtta      3180
     aaaataggtg ctccacactg agagaaacta ggacaggagt gccacagggc tcagtcctag      3240
     gcccctttat gttcacaatt gcaacgaatg atctaccgtg tcatgtagga gaaaatgcaa      3300
     ttgtctgcta tgcagatgac acgacactgc tcaatacgca taacaacata actgaattgc      3360
     aacatgcaac agacacaaaa ttagaactag caatgaattg gtttacatca aatgaactct      3420
     tatgtaatcc cgacaaaacg cagaaactaa ttctaggatt aaatacaaat gtggaaaata      3480
     aatatgttaa actgctaggc ttccacattg attccaaatt aaactgggag gaacacatta      3540
     gccatgtctg taagaaaata gcaagagtat gctatctaat gtggaaactg acagatgcag      3600
     tcacagatga gtatctaaga gtggcatatt ttgccctatt ccagtcccac atttcatatg      3660
     gaatactatt gtgggsacat tmttgccatg taattgaaat cttgaaaatw maaaaaataw      3720
     watcagaata atgagtagag ctaaacaaaa ggaacattgm cgtcccctct ttattaagca      3780
     caaaataact gttgtaaacc tatacattta cacggctctg ctacatgtca aaagcaactt      3840
     aaacgagtac agtaccagag aaamcataca ccctcacaac accagaagaa aactagacct      3900
     tgmckcacca aggcatagat tggcaaagac tgcaaactcg cgccaaataa tgtgtctaaa      3960
     actgtttaat aaacttccag aatcggctag gttattgccg tataacatat tcaaaaacaa      4020
     aatttatgat tggttaacca aacatccatt ttataagatg gaagaaatat ttgagataaa      4080
     catctttgac attagtatct aagaattgat tgaataaatt cattgtaata gattaagtgt      4140
     aatatattaa gaataaatgt ataatcaatg tacacgccta ttccactgtg ggtggtcaac      4200
     ggtgaataaa ctg                                                         4213
//
ID   Daphne-4_LMi repbase;    DNA;    INV; 4564 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.11, Created)
DT   03-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4564
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3118-3118 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(463..663,618..1451)
FT                 /product="Daphne-4_LMi_1p"
FT                 /translation="MSVKCLTCRRIVSSRVWCDGCSNFFHWACSGAGIGHV
FT                 SESHQWFCRLCSRDRKIGNRRGKLLPFRPSEDWEQEGKIAALQAELDEARR
FT                 ELDRLRGEKGKQGWEVATGIRNRPRTSSDSFVINVQNRFDLLPQLETDEPQ
FT                 TEVDVDRAQQTFSSKLNKNVGKSAKRKKVLLLGSSHARGVGQLLQDELGSE
FT                 YQVTSFFKPSAGLGQVTEDLGSLCKDFAKEDTVVIVGGPGNSIDRDPGYSI
FT                 ECDLAKIASASSHTSVGFVSVLERHDRPHLNSSVRRVNLELERVLGSGAGS
FT                 RIGVIPVDSLSRWDYTRHGLHLNRKGKGKLAGLIAGNLKGGGTTTHGRNSF
FT                 LG"
FT   CDS           join(1436..2365,2359..4413)
FT                 /product="Daphne-4_LMi_2p"
FT                 /translation="KLFFRLRSVSSEKLSQAGTKDVKKFQDTHKSKVKNNV
FT                 CIFHQNIGGLKNKVDELLVCLEDLETNNVIDVLCLSEHHIVTDMEKVNING
FT                 YKLAAHVSRDNMVRGGVAIYVKSFHNVRNLETKTFCVEQSIEACATELKLN
FT                 EGTFIIVTVYRSPSGNFQLFLENLDALLCYLSDRGKQIIICGDFNVDSLKE
FT                 CNRKNDLVVLLRTFNLSSIIDFPTRITKNSSTSIDNFFIDRDKFKNINAYP
FT                 VENGLSDHGAQLVTVHDIAPCSKSNQTFKVVRSINNINIANFRESLQQLDW
FT                 VYKEPDANLKYNLFHDTFYILRVFENCFPKKVVKQNSKKTCKKPWLTKGIR
FT                 ISCNRKRELYLTARGSTDPEIVQYYKNYCAILRKVIKKSRSMCIMSEISTS
FT                 DNKIKTIWNIIERETGQPKAQEDCITIKLNDKCTKNKSEMENIFNNHFLNV
FT                 VEKIGSRCSLEEARLLIEGAIPTQFDTIVIPPTSPLEISKIINSLKSKSSY
FT                 GIDGISSRVLKACSPQISRILSHLCNSSLKQGVFPDRLKYAIVKPLHKKGD
FT                 TSDVNNYRPISLLTALSKIFEKVMYSRVASHICKNKVLTKCQFGFQKGFST
FT                 ENAIYAFTDQILNALNNRTSPIGIFCDLSKAFDCVNHGILLDKLNHYGLTG
FT                 AVHKWFNSYLTGRMQKVEISGSCNVKTSADSSNWGTIKDGVPQGSVLGPLL
FT                 FLIYINDLPFYIDEDAKLVLFADDTNIVITSKKQELSDVIVNNVFHKIIKW
FT                 FSANGLSLNFDKTQYIQFCTVNGTTPVINIDFEQKSVTKVEFSKFLGVCID
FT                 ERLNWKQHIDGLLKRLSSATYAVRVIANFGDKNLSKLAYYAYFHSLLSYGI
FT                 IFWGNSSLSKKVFIAQKRVIRIIAGAHPRSSCRHLFKDLGILTVTSQYIYS
FT                 LMKFVVNNPTQFKSNSSVHSYNTRRKDDLHYVGLNLSLAQKGVNYAATKVF
FT                 GHLPSSIRSLTDSQLAFKNKLKEFLNDNSFYSLDEFLDIN"
XX
SQ   Sequence 4564 BP; 1495 A; 758 C; 960 G; 1351 T; 0 other;
     tagccctgcg ccctgctgcc cggacgcctg gagtcacagc tctcgtattt gataagtaat        60
     ttagaagtaa taaactgtct taaacacttt taactaattt aatacgtgta ttagtgtgct       120
     cttcaagcgt actattaaag gtttttgttt tacttgcgta gtttcatagt aatcacgaaa       180
     agttcatttt gtttacatac tcgctgctag gccgaacttt tgagcttaca gattaaactt       240
     tattccgcaa ttttaagtgc aattactgct agtctacact catattagtg tcttaaatac       300
     gtttgctgcc cctttatatc tgtagattat cataattcta ctaacaaatt tctgaacacc       360
     tactgtttac atagtcgcga gtaggcctaa attttcgtat acgtattttc attgttttcc       420
     ggtaacttaa ttgtcttagt aacactaaaa tcgatttgta tcatgagtgt aaagtgcctg       480
     acatgccgta gaattgttag ctccagggtc tggtgtgatg gatgtagtaa cttttttcat       540
     tgggcgtgta gtggcgcggg aatcgggcat gtgagcgagt ctcatcagtg gttttgtaga       600
     ctgtgtagta gagataggaa gattgggaac aggaggggaa aattgctgcc cttcaggccg       660
     agttagatga ggctaggcgt gaactggata ggttaagggg ggagaagggt aaacaggggt       720
     gggaagtggc aacaggcata aggaacaggc caagaacttc ttcagacagc tttgttatta       780
     atgttcaaaa taggtttgac ctgttgcctc agttagaaac tgatgagcct cagacagaag       840
     tagatgtaga cagggcacaa caaactttca gtagcaaatt gaataagaat gtagggaagt       900
     ctgcaaagag gaagaaagtt ttgttgctag gtagttcgca tgcaagaggt gtgggccaac       960
     ttctgcagga tgaattaggg tcagaatacc aggtcacaag ttttttcaag ccgagtgctg      1020
     gtctggggca ggtgacagag gatttaggtt cactctgtaa agactttgct aaagaagaca      1080
     ccgtggttat tgtgggtggg ccgggcaata gtattgacag agatccgggg tacagcatag      1140
     agtgtgacct ggcaaagatt gcctcagcat cgagtcatac cagtgttggg tttgtgtcgg      1200
     ttctggagcg ccatgaccgg cctcacttga actcttctgt caggagagtt aatttggagc      1260
     tggaacgggt gcttggatct ggtgcggggt ctcgcattgg tgtgattcct gttgattctc      1320
     tctctaggtg ggattatact aggcatggcc tccacctcaa caggaaaggg aagggtaaat      1380
     tggctgggct tatagcagga aatttaaagg ggggaggaac tacaactcat ggtagaaact      1440
     cttttttagg ttaagatcag tgtccagtga gaaactcagt caggcaggta ctaaagatgt      1500
     taaaaaattt caagatactc acaaaagtaa agtgaaaaac aatgtttgta tatttcatca      1560
     aaatattggg ggattaaaga ataaagttga tgagcttttg gtttgtttag aagatttaga      1620
     aactaataat gtaatagatg tactatgcct gtctgagcat cacattgtca ctgatatgga      1680
     aaaggtaaat atcaatgggt acaaattagc tgcacatgta agtagagata atatggtgag      1740
     aggaggagtt gccatatatg tcaaaagttt ccacaatgtg agaaatttag aaacaaaaac      1800
     gttttgtgta gagcaaagta tagaagcatg tgccactgaa cttaaactaa atgagggcac      1860
     tttcataatt gtaacagtgt ataggtcccc ctcagggaat tttcagcttt ttctagaaaa      1920
     cttggatgca ttgttgtgct atctgtcaga cagggggaag caaattatca tttgtgggga      1980
     tttcaatgtt gattcactga aagagtgtaa taggaagaat gaccttgtag tattactcag      2040
     aactttcaat ttaagctcca ttattgattt tcctactcgg ataacaaaga acagcagcac      2100
     atcgatagat aactttttta tagaccgaga taagtttaag aacataaatg cttatcctgt      2160
     tgagaatggc ctttcagacc atggtgctca gcttgttaca gtacatgaca tagctccatg      2220
     cagtaaatca aatcagactt tcaaagtagt ccgttcaatt aacaatataa acattgcaaa      2280
     ctttagggaa agcctacagc agctagactg ggtgtataag gaacccgatg caaacctgaa      2340
     atataactta tttcatgata cattttaagg gtatttgaaa attgttttcc caagaaagta      2400
     gttaaacaaa attctaagaa aacatgtaaa aaaccatggc taaccaaagg aataagaata      2460
     tcttgcaacc gtaaaaggga actgtatcta acggcaagag ggagtactga tccagaaatt      2520
     gttcagtatt ataaaaatta ttgtgcaata ctaagaaaag ttattaaaaa gtccagaagc      2580
     atgtgtatca tgtctgagat cagtacctct gataataaaa ttaaaactat ttggaatatt      2640
     attgaaaggg aaacagggca accaaaagca caggaagact gtattaccat aaaactgaat      2700
     gataagtgta ctaaaaataa gtcagaaatg gaaaatattt tcaataatca ttttctaaat      2760
     gttgtggaga aaataggatc tagatgttcc ttagaagagg ccaggctact aatagaaggg      2820
     gccataccta cacagtttga tacaattgta attccaccaa cctctcccct tgaaatcagt      2880
     aaaataataa actcactgaa aagtaaaagc tcttacggaa ttgatggcat ttccagccgg      2940
     gtacttaaag cttgttcccc acagataagt aggattctca gtcacttatg taatagctct      3000
     ctgaagcaag gtgttttccc tgatagactg aaatatgcca ttgtcaaacc attgcataaa      3060
     aaaggggata catcagatgt taacaactac cgcccaatct ctcttctgac agctttatcg      3120
     aaaatttttg agaaagtaat gtattcaaga gtagcctccc atatttgtaa aaacaaagta      3180
     ctaaccaaat gtcagtttgg ttttcagaaa ggcttttcaa cagaaaatgc tatatatgcc      3240
     ttcaccgatc aaatattaaa tgctctgaat aaccggacat cacccattgg tattttttgt      3300
     gatctttcaa aggcctttga ttgtgtaaat catggaattc ttctagataa gcttaatcat      3360
     tatggtttga ctggggcagt gcacaaatgg tttaattcat acttaactgg aagaatgcag      3420
     aaagttgaaa taagtggttc atgtaatgtc aaaacatcag ccgattcctc aaactggggg      3480
     actatcaagg atggggtgcc acagggttcg gtcttaggtc ctttactgtt cttgatatac      3540
     ataaatgact tgccattcta cattgatgaa gatgcaaagt tagttctttt tgctgatgat      3600
     acaaatatag taatcacatc caaaaaacaa gaactaagtg atgtaatcgt aaataatgtt      3660
     tttcacaaaa ttattaagtg gttctctgca aacggactct cattaaattt tgataaaaca      3720
     cagtatatac agttctgcac agtaaatggc acaactccag taataaatat agactttgaa      3780
     cagaagtctg taactaaggt agaattttca aaatttttag gtgtgtgcat tgatgagaga      3840
     ttaaactgga agcaacacat agacggtctg ctgaaacgtt tgagttcagc tacgtatgct      3900
     gttagggtta ttgcaaattt tggcgataag aatctcagta aattagctta ctatgcctat      3960
     tttcattcac tgctttcgta tggcatcata ttctggggta attcatcatt gagtaaaaaa      4020
     gtattcattg cacaaaagcg tgtaatcaga ataattgctg gagcccaccc acgatcatcc      4080
     tgcagacatc tatttaagga tttaggtatc ctcacagtaa cttcacagta tatatattca      4140
     cttatgaaat ttgttgttaa taatccaacc cagttcaaaa gtaatagcag tgtgcacagc      4200
     tataacacca ggagaaagga tgatcttcac tatgtagggc taaatctgag tttggcacag      4260
     aaaggggtaa attatgctgc cacaaaagtc tttggtcacc taccaagcag catcagaagc      4320
     ctgacagata gccaactagc atttaaaaat aaattaaaag aatttctgaa tgacaactcc      4380
     ttctactcat tggatgagtt tttagatata aattagtaaa ttaaaaagaa aaaaaaaaat      4440
     gtcatgtaat attttgtgta atgtaacgtc ttgtacagac acccttcatt aacctgacac      4500
     gttccacatc attacgaagt gtcgtattca tgatctatgg aacaagtatt aatctaatct      4560
     aatc                                                                   4564
//
ID   Daphne-50_LMi repbase;    DNA;    INV; 4495 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-50_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4495
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 179-179 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(626..1450,1339..2391,2486..4294)
FT                 /product="Daphne-50_LMi_1p"
FT                 /translation="MKTAKFCRSEKQKLQLVASATHSDKSRNIQMLPAANE
FT                 LITEILSEPTNSLKTSEKIQHKTSNKNIVGNTEKAPENEHSGSSQTGWKVN
FT                 HMKAKKVCFSETKNSSMTANQINSSAECKQSNKSEPQSPILSGNIEIPIPQ
FT                 ISAAPPARSFNIGNRITNIVGRGEKQEELYGEKKACFHPSKVNSSTTTEIV
FT                 ISFLKKTFPEYNNFEEEKLATKGLNSSFKIGVDFELKEKVMNSSIRPKNVV
FT                 LWHFLFRRTFNAAVQQALLHQEKVNKMYTKLTFLECGTMAFFIPEDVQCSS
FT                 TTGSTTSREGQQNVHQINVPIVLASINVECLRTKYDMLSLFVKDVRPDVLC
FT                 VCEHWLHKEEGEYYRCIEYLKMASSLYRETTTKGGVAVYANKNIKMRKVDL
FT                 TNYCSDVDLELAGLGLVDIIMIIESVYHSPNGNFDNFVTNLESCLSHLTHL
FT                 KSKIAHCGDFNVHIGGNGTKERTFLNLVNSYGLFVANRLPTRGNACLDTII
FT                 TNLDSWNYKVNVVDAMIADHSALVMKLQMKTMRNQQTNTWQSNYVFYQRMV
FT                 LKEKLDTFKASLSSINWQQIVTEAEPNDALNALFQTLKTKFDEMFPLIPKK
FT                 KSQDKQKIEIQFDEMFPLIQRKVKDKQKITNTVTQQILRGQETVQKKIEEA
FT                 KRKNNDKFIREAYNPCKAAWTLVNEHREKXTSSSSTCSPDNFNDYFIKVIE
FT                 DTVAEIPDTDVDFAVYLPNKIQSKMETWKKVQPSDIVKMVKAYKTSESPDI
FT                 YGMSCTVLKKIVGVIAQPLATAINNCLSAGVFPDFLKLARTVPIYKKGNPE
FT                 NVSSFRPISIIPVLAKVIETIMKNQILTYFEENNLFHDAQHGFRKGKSCTT
FT                 AALDLLTKVKQSFEERESVALTLCDLSKAFDCIPHKILLKKIETLWGGRFS
FT                 PSYTSMLPGRQKTNCFSPGATSQEQKVKHGVPQGSVIAPLLFLIFVNDLSQ
FT                 VGCTLQFADDTTLIAKGENSAQAVLKSDALLKNAKEWFITNKMKTNEEKTQ
FT                 RMVCSLSKNTHLDHTETVKLLGFTIDHKLSWNQHTEQVCKKLSRVIYLLRR
FT                 LKKVITDQYMLTVYHALFHSHITYGLPLWGHSAGCKDVLLLQKKAIRVITS
FT                 SRKQEHCRPLFTKLGIMTVYSHYVLQCLIHVRENLDTYSKRSDIHEHNTRN
FT                 KDDINLPTCRLSKSRDSFPVIAVRMFNTLPTELQTLPLEKFRKQMTNALKQ
FT                 HPLYSIQEFFESEGSEWTQ"
XX
SQ   Sequence 4495 BP; 1691 A; 836 C; 867 G; 1090 T; 11 other;
     caagatggcg gaaagtgaag atagaaattc atgtagaaag tgcaagaaag tattaaaaaa        60
     taccgatata tcagtgactt gtggattstg gcgtcgaaaa caattccaca gtgattgtgt       120
     cagcctaagc agcagtgaaa twcacgtwgt gaaaagctca aaagaccgaa taaagttttg       180
     ttgtgaaaca tgmcagctcw cattkgggaa tgawacaacg aaagaagtac tgcctamaag       240
     kgatttcgct gcagtgstca aatgggcaag gagaaacaaa gtgtagaggt aggtgacgat       300
     tccaaactaa attctaaata tcaatgggga tagataaatc cactgaagct atcgtctaat       360
     tcatgtgaac aaaagcaaac aaagagttca taggcctgtt tgaggcaaaa catccagaac       420
     atgtgtgatt tagttgaaac atgggacagc tagtgaataa actcgcgaaa gacaacgctg       480
     ataagaagaa aaacttgatg taatgcatgg aaatatctga gttagaaaga acctgcccat       540
     aatcagcagt atgcagcgaa agtgaacaaa acatgcaggt aatgccctca gttaaggaaa       600
     aaattgcaga ggacccaacg aacctatgaa aactgccaaa ttttgtagat cagaaaagca       660
     gaaattgcaa ttagttgctt ctgcaacaca cagcgataaa tcacgtaaca tacaaatgct       720
     gccagcagca aatgaactta ttactgaaat actgagtgag cctactaact cattgaagac       780
     cagcgaaaaa atccaacata aaacaagcaa taaaaacatc gtgggaaaca cagaaaaagc       840
     tccagaaaat gaacattctg gtagcagcca gacaggctgg aaagttaatc acatgaaagc       900
     aaagaaagta tgcttctctg agacaaaaaa ttcaagtatg actgctaatc aaataaattc       960
     ttctgctgag tgcaaacagt ccaataagtc tgaaccccag agtcccatac tgagtggaaa      1020
     catcgaaata cccattcctc aaatatctgc tgcaccacca gcaagaagtt tcaatattgg      1080
     aaacaggata acaaacatag taggtagagg cgaaaaacaa gaagagctgt atggagaaaa      1140
     aaaggcttgt tttcacccga gcaaagttaa cagcagtaca acaactgaaa ttgtaatcag      1200
     ttttctaaag aaaaccttcc cggagtacaa taattttgag gaagaaaaac tagctacaaa      1260
     aggcctaaac agcagtttca aaattggtgt tgactttgaa ctaaaggaga aagtaatgaa      1320
     cagttctata aggcctaaga atgtggtact atggcatttt ttattccgga ggacgttcaa      1380
     tgcagcagta caacaggctc tactacatca agagaaggtc aacaaaatgt acaccaaatt      1440
     aacgttccta tagttttagc tagtataaat gttgaatgcc tgcgaacaaa atatgatatg      1500
     ttatctttat ttgtaaaaga tgtacggcca gacgtgttgt gtgtatgtga gcactggctt      1560
     cacaaagaag agggtgaata ctacagatgt attgaatacc taaagatggc aagttcattg      1620
     tatagggaaa ctaccaccaa aggaggtgta gctgtgtatg ccaacaaaaa tatcaagatg      1680
     agaaaagtgg acctgacaaa ttactgctca gatgtggatt tagaattggc tggcttaggg      1740
     cttgtagata taattatgat tattgaatca gtgtaccatt caccaaatgg aaatttcgat      1800
     aattttgtca caaacttgga aagttgttta tctcacctaa cacacctcaa atctaaaatt      1860
     gcacactgtg gtgatttcaa tgtacacata ggtggaaacg gcacaaagga aagaactttc      1920
     ctgaacttag taaacagtta tggcctcttt gtagcaaata gactcccaac aagaggtaat      1980
     gcctgccttg ataccattat cacaaactta gatagctgga attacaaagt aaatgtagtt      2040
     gatgcaatga tagcagacca cagcgcatta gtcatgaaac tacaaatgaa gacaatgaga      2100
     aatcagcaga caaacacatg gcagtccaat tatgtttttt accaaagaat ggtgctgaaa      2160
     gaaaaactag ataccttcaa agcttcacta tctagtatta actggcaaca gatagtcaca      2220
     gaagcagaac ccaatgatgc cttaaatgcc ctttttcaga cactgaaaac caagtttgat      2280
     gagatgttcc cactgatacc aaagaaaaag tcacaagaca aacagaaaat agaaatccag      2340
     tttgatgaga tgttcccact gatacaaaga aaagtcaaag acaaacaaaa atagaaatca      2400
     aaaacgtggt atacatctga gctagccaat ctaaaaagca ttgtcctaat cttgaatgat      2460
     cattccaaag cagccacaga tctaaataac aaacactgtt acacaacaaa tacttagagg      2520
     ccaagaaact gtacagaaaa aaattgagga agctaaaagg aagaacaatg ataaattcat      2580
     aagagaagcc tataatccat gcaaagcagc ctggacacta gtaaatgagc atagggaaaa      2640
     acmtacttcc tcttcaagta cctgcagtcc tgataacttc aatgactatt ttattaaagt      2700
     tatagaagac actgttgctg aaatcccaga tacagatgtg gattttgctg tttacttacc      2760
     aaataaaatc cagagcaaaa tggaaacctg gaagaaagta cagccgagtg atatagtgaa      2820
     aatggtaaaa gcttataaaa cttctgagag tccagatatc tatgggatgt cctgtactgt      2880
     cctgaagaaa attgttggtg taatagcaca gccattagca acagccataa acaactgcct      2940
     atctgcagga gttttcccag attttttgaa actcgcacgg acagtgccaa tttacaaaaa      3000
     aggaaaccca gaaaatgtgt caagctttag accaatatca atcattcctg tactagcaaa      3060
     agtgattgaa actatcatga aaaaccagat cttaacctat tttgaagaaa ataatctttt      3120
     ccatgatgca caacatggtt tccggaaggg gaagtcttgt actactgctg cactggactt      3180
     attaacgaaa gtaaagcaat cattcgagga gagggagtct gtggcactca cactgtgtga      3240
     tctaagcaaa gcattcgact gtatccccca caagattttg ctaaaaaaaa ttgaaacact      3300
     atggggtggg aggttcagtc ctagctacac ttcaatgtta cctggaagac agaagacaaa      3360
     ttgtttcagt ccaggggcaa catcccaaga acagaaggtg aaacacggtg tgccacaagg      3420
     ttccgtcata gccccgctcc tctttctcat ttttgtaaat gatttaagcc aagttggttg      3480
     cacactacaa tttgcagatg acaccactct cattgccaag ggggaaaatt cagcccaagc      3540
     agtactgaag tctgatgcac tactcaaaaa tgctaaagaa tggttcatca ccaataaaat      3600
     gaaaacaaac gaggaaaaaa ctcagcgtat ggtatgcagc ctcagcaaaa acacacactt      3660
     ggaccataca gaaactgtaa aactgttagg atttacaata gaccacaaac tctcatggaa      3720
     tcaacacact gaacaagtat gcaagaaact ttctcgtgtg atatacctcc taagaagatt      3780
     aaagaaagtc ataacagacc agtatatgtt aactgtctat catgctttgt tccatagcca      3840
     cattacatat ggactaccac tatggggtca ctcagcaggc tgcaaggatg tgctgctgct      3900
     tcaaaagaag gcaataagag ttattacatc cagcagaaaa caggaacact gcagaccgtt      3960
     atttacaaaa ttgggaataa tgactgttta tagtcattac gtattacagt gcctcatcca      4020
     tgtaagggaa aaccttgata cttacagcaa gaggagtgac atccacgaac ataacacccg      4080
     aaacaaagat gacataaatt taccaacctg tcgactatcc aaatcaagag acagtttccc      4140
     agtaattgct gtaagaatgt tcaacacact acccacagaa ctgcagactc ttccactgga      4200
     gaagttcagg aagcaaatga caaacgctct taaacaacat ccactatatt caatccaaga      4260
     gttctttgag agtgagggaa gtgaatggac tcagtgatac tgtatttaca ttatcctata      4320
     tatattgttt aaatgaatga agtgaacaga atcagtaata attgcattat actgtatata      4380
     ttgtaaatga gatgtaattc tgtaaattaa tgtatttata ttgtaattct gacgcagtct      4440
     gtccagccat ggctggtgaa cgacacagac ctggtaataa atgataataa taaat           4495
//
ID   Daphne-51_LMi repbase;    DNA;    INV; 4312 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 20.01, Created)
DT   21-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-51_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4312
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 180-180 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1122,1116..1634,1648..2724,2642..3745,
FT                 3645..4070)
FT                 /product="Daphne-51_LMi_1p"
FT                 /translation="MAPIEKCSGTVLSSKRQKISSSSCKECEKRVMKGIMC
FT                 VKCNYWLHEKCAKINLKYISDDFPWTCHACLSVETADLVSLVESKNEIIKL
FT                 LQNDIEALKTEILCLKEENARLLQEKQCTVGEIHQEKQQDCANTCAREIQQ
FT                 TKKETRENTYARNTDVVNENISSAVDVTVNPTCKKPADKYKWKLVTYSKRK
FT                 EKTTARPTQEDENEFLIIGDSLLKNVAVPNSKIDVRPGIRTQQLGKHFKNL
FT                 ENAKSAEPDCEPKHNYRGVFVHVGTNSLRSSSEEEIINDTRNVIRSARSVY
FT                 ARSKLVISGIIKRRSVSDKYISQINCAIKEQCDSLGAIFIDPNKFLCENCL
FT                 GKDGLHLNRLGXVTLSRMFTDVCKIIRNEGNGKLRWTDGGDKSDILAEKAN
FT                 FKHHSKVKEIQNRIPEQMPQHLSQQXENYXKVLHQNIQSIGNKKLEVEILL
FT                 SELQPDILCISEHGLTENQIDNLKISDYTLASYFCRSKQKSGGVSIYIKTG
FT                 KLETANNKGVKLPTVKEKDFEITGVMIEGLSVFCVYRSPSGDISIFLKKIC
FT                 MNMKRNIIICGDINIDMGKGSKIRQDFEELLLQYHMEATISTPTRVTSHSQ
FT                 SVIDNIITNISRSDYESHVIQTAITDHDGQMFYLCRRHGRACETKAKIKEI
FT                 RVMSEQNINTFRTILSRETWTETLQAQTVNEKYDAFIATIKFHFEVAFPKV
FT                 KRQIKVQQQQQWITREVLEQRRKLQELRQVGDVEGYKTLQKTYRKTIRKAK
FT                 ANSINITILNSKNKIKAAWNVINTERKENAGPNKETEIRSMKIDNRIVTDG
FT                 SKIANILNDNFINVVENLKLERKSPKKKGTKVTKYSYSTMFLRPVTEDELR
FT                 KTIQKLKAKKSAGDDEISNHVIQLVSEQHTHTISRYSKQLFQRWNFSREIE
FT                 DKVSNTLTPLVDIANSSFRDGIFPEKLKTSKVVPVYKKGNKDDPNNYRPVS
FT                 LISGFSKILEMLMYNRLVDYLDKHNILVPSQHGFRMGKSTESAIASLTEYV
FT                 IQCLDEKRVVAAMFLDLSKAFDTIEHDILIKKLENYGIRGLSGEWIESYLC
FT                 NRKQYVSIGNSFRSETKTIKYGVPQGSVIGPLLFNLYVNDIGGEEKEKKIL
FT                 YADDMTVLNHGQNMQQLERSAFISANTTAQWLTENELVINLKKTMFTVFRN
FT                 KEKSVQMNLKVNDMYLEEVESTKFLGVIVDNELKWKEHINYVCKKLSSVIF
FT                 IMKQLSQYADKQLLCTVYHGLFEPYLQYGVTVWGNSNIQETKKIVHFTKES
FT                 NQDHTKKKELGDLQCGETQTSKKRKKLFTLQKKAIRIILRRKNSETCRNCF
FT                 KSLGILTFTSLYIYKTIMYITKEISLYDTNASVHTHNTRGKNEIRNIPHRL
FT                 TILEKGPRYSGIKFLRNLPKNLRDNIHGNNFSRKLKDYLMEKEFYSIEEYL
FT                 LN"
XX
SQ   Sequence 4312 BP; 1710 A; 694 C; 850 G; 1055 T; 3 other;
     atggcaccga tagaaaagtg tagtggcact gtgctctcat caaaaaggca aaaaataagc        60
     agttcgtcat gtaaagaatg tgagaagcga gtgatgaaag gtattatgtg tgtcaaatgc       120
     aattattggt tacacgaaaa gtgcgcgaaa ataaatctaa aatacatcag tgatgatttt       180
     ccgtggacat gccatgcttg tttaagtgtc gaaacggccg atctggtaag tttagtggaa       240
     tccaaaaatg aaattataaa gttactgcaa aatgacattg aagcattaaa aacggaaata       300
     ctgtgtttaa aggaagaaaa tgctagatta ttacaagaaa aacagtgcac tgtgggtgaa       360
     atccatcaag aaaagcagca agattgtgca aatacgtgtg cgcgtgaaat ccagcaaacg       420
     aaaaaggaaa ctcgcgaaaa tacgtatgct cgtaatacgg acgttgtaaa cgaaaacata       480
     tctagtgctg tcgatgtcac ggtaaatcca acgtgcaaaa aaccggcaga taaatataaa       540
     tggaagttag tgacctattc taaaagaaaa gagaagacca cagctaggcc tacacaagag       600
     gacgagaacg aatttctaat aattggcgat tcattgctga aaaatgttgc agtcccaaac       660
     agcaaaattg atgtgcgccc aggaattaga acgcagcaac tcggcaaaca ttttaagaac       720
     ttggaaaatg caaaatctgc agaaccagac tgtgaaccca agcataatta cagaggcgtt       780
     tttgtgcatg tcggaacaaa ctcgttaaga agcagcagcg aagaagaaat tattaatgat       840
     accagaaatg tgattcgctc ggcaagaagt gtatatgcga gatccaagct cgtaattagc       900
     ggaataataa aaaggaggtc agtgagtgac aaatatatct cgcaaataaa ctgcgccatc       960
     aaagaacaat gcgatagcct aggggcaatt ttcatagacc caaacaaatt tctatgtgaa      1020
     aattgtcttg gaaaggatgg cttgcactta aatagactgg gatmtgtgac actcagtaga      1080
     atgtttacag atgtctgtaa aatcatcaga aatgagggaa actaagatgg actgatgggg      1140
     gtgataaatc agatattctc gctgaaaaag caaattttaa acatcattca aaagtgaagg      1200
     aaatacagaa taggatccca gaacaaatgc cacaacattt aagccagcaa wacgaaaatt      1260
     acatkaaagt gctacatcag aatatacaat ccattggcaa caaaaaatta gaagtggaaa      1320
     tacttttaag tgaattacaa ccagacatat tatgtattag cgaacatgga ctaactgaaa      1380
     atcagataga taatctgaaa ataagtgact ataccttagc cagctatttc tgcagatcaa      1440
     aacagaaaag tggaggtgta tctatatata tcaaaacagg aaagctagag actgcaaaca      1500
     ataaaggtgt gaaactccca acagtaaaag aaaaagactt tgaaattact ggtgtaatga      1560
     tagaaggctt aagtgtgttc tgtgtgtaca gatcaccaag tggcgatatt agcatcttcc      1620
     tgaaaaaaat ttgctaattt actatgaatg aatatgaaga gaaacattat tatatgtgga      1680
     gatatcaata ttgacatggg aaaaggatca aaaattaggc aagattttga agaactgcta      1740
     ctgcagtatc acatggaggc aacaatatct acaccaacaa gagtgacatc tcatagccag      1800
     tcagttattg acaacatcat taccaatatc agtagatctg attatgaatc acatgttatt      1860
     caaacagcaa taactgatca tgacggacaa atgttctacc tttgtagacg acatggcagg      1920
     gcatgtgaaa caaaagccaa aatcaaagaa atcagagtca tgagtgaaca aaatataaac      1980
     acttttagaa caattttaag cagagaaacc tggactgaaa ctctgcaggc acagactgta      2040
     aatgaaaagt atgatgcttt tatagcaaca attaaatttc actttgaggt agcattccca      2100
     aaagttaaga gacaaatcaa ggtacagcaa caacaacagt ggataaccag agaagtatta      2160
     gaacaacgta ggaagctaca ggaattgaga caggtgggag atgttgaagg ctataaaaca      2220
     ttacaaaaaa cttacaggaa gacaataagg aaggcaaaag caaactcaat taacatcacc      2280
     atattaaact cgaaaaacaa gataaaggca gcctggaatg taataaacac tgaaagaaag      2340
     gaaaatgctg gaccaaacaa agaaacggag atcaggtcaa tgaaaattga caacagaatt      2400
     gttacagatg gtagcaaaat agcgaacatt ctcaatgaca attttataaa tgtggttgag      2460
     aacttaaaac tggaaagaaa gagtccaaag aaaaagggta caaaggtaac aaaatattca      2520
     tacagcacta tgttcttgag gcctgttaca gaagatgagc taaggaaaac tatacagaaa      2580
     ctgaaggcca agaaatcagc tggcgatgat gaaatatcaa atcatgtgat acagttagta      2640
     agtgagcaac acactcacac cattagtaga tatagcaaac agctctttca gagatggaat      2700
     ttttccagag aaattgaaga caagtaaggt agtgccagtg tataagaaag gaaacaagga      2760
     tgaccccaac aactatagac cagtctcgct gatatcagga ttctcaaaaa tattggaaat      2820
     gctcatgtat aatagattag ttgactatct ggacaaacac aatattcttg taccatcaca      2880
     gcatggtttc agaatgggta aatctacaga atctgccatt gctagtctga cagaatatgt      2940
     tatacagtgt ttagatgaaa agagagttgt agctgcgatg tttctggacc tctccaaagc      3000
     attcgacact attgaacatg acatactgat aaaaaaactg gaaaattatg gcattcgtgg      3060
     gctatcaggt gaatggattg aatcatacct gtgcaacagg aaacaatatg tatcaatagg      3120
     gaactcattt agatcagaaa ccaaaaccat caaatatgga gtgccacagg gttccgtaat      3180
     tgggcccctg ctgtttaatc tttatgtaaa tgatataggt ggtgaagaga aagagaaaaa      3240
     aatattgtac gctgatgaca tgacagtatt gaaccatggg caaaatatgc aacaacttga      3300
     gagaagtgca tttatttcag caaacacgac agctcagtgg cttacagaaa atgagctagt      3360
     tataaaccta aaaaagacta tgtttacagt gttcagaaac aaagagaagt cagtgcaaat      3420
     gaatttaaag gtcaacgata tgtatctgga agaagtagaa tccacaaaat ttttaggtgt      3480
     tattgtagac aatgagctga aatggaaaga acatattaac tatgtctgca aaaaactaag      3540
     ctctgttata ttcatcatga agcaactgtc acaatatgca gacaaacagc tattgtgcac      3600
     agtatatcat ggactctttg aaccatacct gcagtatgga gtgacagtgt ggggaaactc      3660
     aaacatccaa gaaacgaaaa aaattgttca ctttacaaaa gaaagcaatc aggatcatac      3720
     taagaagaaa gaactcggag acctgtagaa actgcttcaa aagtctaggc atcttaactt      3780
     ttacgtcttt atacatctat aaaacaataa tgtacatcac aaaagagatt tcactgtatg      3840
     atacaaatgc tagtgtgcat acccacaaca cacgggggaa gaacgaaata agaaacatac      3900
     cccaccgact gacaatcctt gaaaaaggac ctcggtactc gggcatcaag ttcttaagaa      3960
     acctgcctaa aaatcttcgt gataatatac atggcaataa tttctcaagg aaactgaaag      4020
     actatctaat ggaaaaagaa ttttacagca ttgaagaata cttgcttaat taattttgta      4080
     cataatgtta atacattcta gtgaatttgt gaaaagtgac atttgattgt tatatacatg      4140
     tcttacacat gacataactt gtattaaatt aaatatgtat atgtttgctc ttgcacatta      4200
     ggagataagt gaaaatgaat atataatgct attgacgtat cctatattac acgtacatgt      4260
     attgtacaca atgtaatcct acaggatcaa ataaaaattc aattcaattc aa              4312
//
ID   Daphne-52_LMi repbase;    DNA;    INV; 4096 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 20.01, Created)
DT   12-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-52_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4096
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 181-181 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(298..474,441..623,586..717,671..940,944..2488,
FT                 2448..3629)
FT                 /product="Daphne-52_LMi_1p"
FT                 /translation="MDLRATSIVKPDARTENIIEDVSEEKNTLKETDFIVC
FT                 VAGANNVSHNEARRCVTGLENVSQKMCNRFGKRLDANKPKTLLLLKYLIDM
FT                 ISSLILVSTKKFAKRILKLNYFKLRKMQCSGHTTLSYAKCNVVDISRLDRS
FT                 SHTEHGEHLNYQGKKIVSRHKQNYKITKVKKLCQDISKIINEIHQRKNLVL
FT                 KETPSDHLYTFFFFFFFFFIREIDIAGKGRGDTILSDTLIHSDNCAALYHP
FT                 VKINEHARPSPEVCEILCLNEHWLKVEESEYYRYQKMQGGGVAVLVNEQMS
FT                 NKVKVIDMRHLTVEGKFEAAAIQLPYCKVVVMSVYCPPKTDFKDFLDYMEA
FT                 LLLSLHKYKMYRVLIFGDFNLDVVLKNPKTRLFLDTLKSHNFYCLNDKPTR
FT                 QNACLDNVIANTCKTETHLNVIKPLLSDHDGLLLRLSGVENSHIHEAESRT
FT                 VRLLHDLRVRNLRNDLQGIDWSSILNRCQSSGEACEHLLHTIADTFNKCCP
FT                 KITKRPCSGKNKKRNITKWYTPYLSKLKTLLKSYYEMSCSNSIYKPVYLKL
FT                 KRFYRREISKAKRQANDNLIEQSTNKCKATWKIIKAESGITSNKLPIPISP
FT                 DQLNHSFIHSGKCTVHDDETVANDVSELALPISLRAEFEGSNREFEWKSVS
FT                 PKDIINVVANLSNSKTEDFYGLSNFIMKQIIETISHPLCYLINWMFEESVF
FT                 PECLKLTVVIPVHKKGDRESPANYRPIAIVPTISKIIEVIMKKQLNEYFEN
FT                 NKLLNQAQYGFSRRSIHNIRPSTVFREGQSTIKAVQDVVISALNGFEQKQY
FT                 TCATLVDLTKAFDTISHKILINKLKHYGVTDRRLALLKSYLSNRKQMVIID
FT                 SNKKSGFLNVIRGVPQGSVLGPFLFIVYVNDLPNLLPYKSVMYADDTTFLT
FT                 SHNDENVLEEMNKSMMEKALSWFQANELTLNTSKTEKIVFSLKDAANDTVK
FT                 LLGIHLDTKLTWNSHTEILCTKLSRVLYLIRKLKTCVSEKQLLLAYYAFFH
FT                 SHINYGIIMWGNSAGARSVFLWQKKAIRCMYGLRANTPCKMYFIENKIMTV
FT                 PSLYIFHTLMYTKMNWDKHDTRANVHSHKTRNRNTLNIPRTRLTKIQKNFQ
FT                 YAGKVFINKLPSAIRQLKTSRFRKVIESWLKEKAFYSVEEFENSDVSDIVS
FT                 SPVM"
XX
SQ   Sequence 4096 BP; 1472 A; 732 C; 734 G; 1158 T; 0 other;
     atgcgaacat ttcaaatggt gtttctctag gtaccggtaa gccaaacaaa gtgatgaaaa        60
     atgtgccaaa ctctcatcaa aactcattaa ataaataacc aatgtgcaca aacaggttca       120
     gtgtattatc agaaagtagc agcaatatta aaactgaaca ctccagtcaa tatgaagtaa       180
     aaaaacagct ttaaaattgt caccagcaat aataaaaagc ggtcaaataa atgtaacgtg       240
     cttctgctag cggacaacca cgggaggaaa ctagctaaca ttttacatga cttgaatatg       300
     gatcttcgag caactagcat cgtgaaacct gatgcgagga cagaaaatat cattgaagac       360
     gtctcggaag aaaagaatac attgaaggaa actgacttca ttgtttgtgt ggcgggtgca       420
     aacaatgtct cacacaatga agccagaaga tgtgtaacag gtttggaaaa cgtttagatg       480
     caaataagcc aaaaacactg ttattgttaa aatacctcat agacatgatc tcatctttaa       540
     ttcttgtgtc aacaaagaaa ttcgcaaaac gaatattaaa attaaactac tttaagttac       600
     gcaaaatgca atgtagtgga cattagcaga ctagacagaa gttcacacac tgaacatggt       660
     gaacatctaa attaccaagg taaaaaaatt gtgtcaagac ataagcaaaa ttataaatga       720
     aatacaccaa cgcaaaaatc tagtcttaaa agaaaccccc tctgatcact tatacacctt       780
     tttttttttt tttttttttt tttttatacg agaaattgac attgcaggga aaggaagggg       840
     agataccata ttaagtgaca cacttatcca ttcagataat tgtgctgctc tatatcaccc       900
     tgtgaaaatt aatgaacatg ctagacctag tccagaagta tgatgtgaaa tactgtgttt       960
     gaatgaacac tggcttaagg tggaggaatc tgagtactac agatatcaga aaatgcaagg      1020
     tggtggtgta gctgtattag ttaatgaaca gatgtccaat aaagtcaaag taatagacat      1080
     gagacattta actgtagaag ggaaatttga agctgctgct attcaactgc catattgcaa      1140
     agtggttgta atgtctgtat actgtccacc caaaacagac tttaaagact tcctggacta      1200
     catggaagct ctactgctat ctttacataa atacaagatg tatagagtat taatctttgg      1260
     tgattttaac ttagatgttg ttctgaaaaa tcctaagaca agactatttt tagacactct      1320
     gaagtcgcac aacttttact gccttaacga caaacctacc agacaaaatg cctgccttga      1380
     taatgtcatt gcaaacacat gtaagactga gactcacttg aatgtcatta agccattact      1440
     atctgaccat gatggacttc tcctgagact gtctggagtt gaaaacagtc acatacatga      1500
     ggcagaatcc aggacagtga gactactgca tgatttacgt gtaagaaatc tcagaaatga      1560
     tctgcaaggt attgactgga gctccattct caacaggtgt cagtcctctg gtgaagcttg      1620
     tgaacaccta ttacacacta tagcagatac cttcaataaa tgctgtccaa aaattacaaa      1680
     gaggccatgt tcagggaaaa acaagaaaag aaacataacc aagtggtaca ccccttatct      1740
     ttctaaactg aaaacactgc ttaagtcata ctatgaaatg tcatgtagta atagtatata      1800
     taagccagtc tacctgaaac tgaagcgatt ctacagacgg gaaataagta aagctaagag      1860
     acaggccaat gacaacctca tagagcagtc tactaacaaa tgcaaggcta catggaagat      1920
     aataaaagca gaatccggga tcacgtcaaa taaactgccc attcccatta gcccagatca      1980
     gcttaatcac agcttcatcc attcagggaa atgcactgta catgatgatg aaacagtagc      2040
     caatgatgtc agtgaactgg ccttacctat atcattgaga gctgaatttg aagggagtaa      2100
     tagggagttt gaatggaaat ctgtttcccc taaggatata ataaatgtag tagcaaacct      2160
     cagtaattca aaaactgaag acttttatgg cctgtccaac ttcattatga aacaaattat      2220
     agaaacaata agccatcccc tgtgctacct tataaattgg atgtttgaag aaagtgtttt      2280
     tcctgaatgt ttaaaactaa cagtagttat acctgtccat aaaaaaggag atagggaatc      2340
     accagcaaat tatagaccca ttgccatagt acccacaata tctaaaatca ttgaggtgat      2400
     aatgaaaaag caattaaatg aatatttcga gaacaataaa ctattaaatc aggcccagta      2460
     cggtttttcg agaaggtcaa tccacaatta aagcagtgca ggatgttgtt atatctgccc      2520
     taaatggatt cgaacaaaaa caatacacat gtgccacatt ggttgatcta accaaggcct      2580
     ttgacacaat atctcacaaa atcctaataa ataaacttaa acattatgga gtaacagata      2640
     gaagactggc attacttaaa tcttacttgt caaataggaa acaaatggtc ataattgact      2700
     cgaataaaaa atcaggcttt ctgaatgtca taagaggtgt gcctcaggga tcggtgcttg      2760
     gaccattttt gttcattgtc tatgttaatg atttgcctaa tctgctccct tacaaatcag      2820
     taatgtatgc agatgacacc acgtttctca cctcgcataa tgatgaaaat gtattagagg      2880
     aaatgaataa atcaatgatg gagaaagcat tatcatggtt tcaggcaaat gaattaacat      2940
     taaacactag caaaactgag aaaatagtgt tctccctaaa agatgcagct aatgacactg      3000
     tcaaattact cggtatccac cttgacacca aattgacctg gaactcacac acagaaatct      3060
     tatgcaccaa actatctcga gtgttgtacc taataagaaa attaaaaacc tgtgtcagtg      3120
     aaaaacagct acttctagca tactacgctt ttttccactc acacattaac tacggtataa      3180
     taatgtgggg taactctgct ggtgccagaa gtgttttcct ttggcagaaa aaagctatcc      3240
     gatgcatgta tggtctacga gccaacactc cttgcaaaat gtatttcatt gagaacaaaa      3300
     taatgactgt cccaagtcta tacatatttc acacacttat gtatacgaag atgaactggg      3360
     ataaacatga taccagagcg aatgttcact ctcataaaac caggaataga aacactttga      3420
     atatccctag gactaggcta acaaaaatac aaaaaaactt tcagtatgca gggaaagttt      3480
     ttattaacaa attacccagt gcaataaggc agttgaaaac cagtaggttc agaaaagtta      3540
     tagaatcctg gctgaaagaa aaggccttct actctgtaga ggaatttgaa aatagtgacg      3600
     taagtgatat agtaagctca cctgtaatgt aaattttgtt agttgggtga aatgctgaga      3660
     ttttttccta tttttatgtc tacttaagtt atgctagata ttatctgtaa gctcactaat      3720
     gtaacgtaga tagcttctca tacaaatata ttgctcagta ctgtagattg ttcaagtgca      3780
     tcatgacttt attctctagc cttgtgaagc tttggacagc ttttcaaatc gaagtgccta      3840
     atagattgtt tatgtgaaag ggaggaaaat ttatgtctct gtctttagca ttatattgag      3900
     ttgtttttat tgtatcgcca tatttttacc cacttggttg ggatgtgaat ttataattta      3960
     tattctttgt tatgttgcta atggaaattc aatctgtacc atacctcaac atgaataaca      4020
     tgtatataca tataaatata gatgaagcct tatgcagcct gaaagctgtc tcatgggcta      4080
     ataataaata aataaa                                                      4096
//
ID   Daphne-53_LMi repbase;    DNA;    INV; 3899 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 20.01, Created)
DT   12-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-53_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3899
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 182-182 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(278..838,805..2463,2421..3533,3494..3706)
FT                 /product="Daphne-53_LMi_1p"
FT                 /translation="MKTLATPENFLIEGIVKPGARFNQILTSTADSRNLST
FT                 NDFAVLIGGSNDVYHNETAAATSALKTTLGKLTNTNVIVLKIPQRYDLMEL
FT                 SCVNTEINRANKSFETVCRQFKNVTIIDINDCIACNHPSRSNCNCQRACHT
FT                 RHGQHLSGLGKTLLAQKILNVINHKVACCSPSEYISKHTQADQGNVLAAHT
FT                 SRSGKRTSLTKTDVLVKXNTQTSKINKQIVHXTNSILNCSRNGFLILHINV
FT                 QSLRNKVAELQYWLDEINCNILCVNEHWLKSTEINLFVPFGYTLASSYCRP
FT                 NIIHGGVSIYINKSLNLQYSAIDLTSLCVEGVFEATAVVLHTQKVVIATVY
FT                 RTPGTDEEIFEKQLSAVILNIAKYKHYKFFITGDINIDVRINRTNVVSFLN
FT                 MLSSLNFCCLNEKPTRMDACLDNIISNICRSQVECDTIKLGISDHDGIWLR
FT                 ISNLPTENTSKLITHRLLXKENIERMKNELKLIEWSSILSXEEDVNKCFST
FT                 FISQLKLTLETNCPRITKRSSSHKRHKPQHTKNWYTPHLDKIRILLLMLKA
FT                 KAATNCENKEDYIRLRKIYKSEIRAAKIKANEKYISNSKNKCKAAWTVVKN
FT                 EINVGKEETTVPLNCNILNEYFVNCASSLVTQNDNTSDAETFLLQSKNKTN
FT                 ERFTWKKISAIDIVKAVNKLNTSRTEDYYGFSNYVLKGIIMEIKMPLLYLV
FT                 NKILEDGIFPECLKITVTLPIFKKGDRHKPETIDQYQLSPQTQTRNYRPIS
FT                 IVPIISKIIESCIHVQIYKYFENNNLLNESQFGFRSNLSTIKAVESLITAI
FT                 HDGYERKQTMCATLIDLSKAFDSVSHEIIVKKLEYYGVAGXALNLFKSYLS
FT                 SRQQLVYVNKERSKLMTIKRGIPQGSVLGPFLFIVNINDFPNYISCKNVLY
FT                 ADDMTMIISGENKQVVKDKNKELFEKSNQWCKANQLCINTTKTEEIYFNLK
FT                 VRKEDNQCVKLLGLKIDQRLSWDDQIKHVSSKLARVIFLLYKLRQCVNKKL
FT                 LILCYYAFFQSQLQYGVLLWGNAPDTSLIFKLQKKAIRCIQGLGPRESCRK
FT                 HFSELSIMTLPSLYVYYCLIYIKENIQKFTVRVNVHTHNTRNSTMLDIHTQ
FT                 DCHKQYYVRYPYSRLSLIHNSHKHLGLKLYNKLPQSVKILTLSNFKTALEV
FT                 WFKKTPYYSVEEYLQSNLENMHN"
XX
SQ   Sequence 3899 BP; 1518 A; 671 C; 666 G; 1039 T; 5 other;
     caaccaaaaa agtttgtttt agtagcaatg ttgaaaaatt aataactgaa gacaacagtg        60
     atgcacataa attgcctaat aaacaaaaca gaaatgactg tttcacttcc actggaactg       120
     aaggaactgt gcccactact gatctgctgg aagaaggcaa tgctgtaact gcaacaggaa       180
     aaggcacaga aagaagagga atcccagacc ccctcatgaa aaatcatcac acatcagaat       240
     atactctgat agctttggaa gaggattagc aacaaaaatg aagacgttgg caacacctga       300
     aaatttccta attgaaggaa ttgtgaagcc tggcgcaaga ttcaaccaga tcctcaccag       360
     cactgcagac tccagaaatc tatcaacaaa tgactttgca gttctgatag gtggctccaa       420
     cgatgtatac cacaatgaaa cagctgcagc aacatcagcc ttgaagacaa cattgggcaa       480
     gttgacaaac actaatgtta tagtactaaa aataccacaa cgatatgatt taatggaact       540
     atcatgtgta aataccgaaa taaatagagc taataagtct tttgaaacag tttgcaggca       600
     gtttaagaac gtaactatta ttgatattaa tgactgtatt gcttgcaatc atccatctag       660
     aagtaattgt aattgccaaa gagcttgcca cacaagacat ggacagcatc taagtgggtt       720
     aggaaagact ttgttggccc aaaaaatact aaatgttata aatcataaag tagcctgttg       780
     tagcccatca gaatacatct ctaagcacac acaagcagat cagggaaacg tactagcctg       840
     accaagacag atgtcttggt caaagamaat acacaaacat caaaaataaa taaacaaatt       900
     gtgcacasca caaacagtat acttaactgc agcagaaatg ggtttcttat tttacatata       960
     aatgtgcagt ccttaagaaa taaagttgct gaactccagt actggctgga tgaaattaac      1020
     tgcaatattc tctgtgtgaa tgaacactgg ctgaaaagta cagaaataaa cctatttgta      1080
     ccatttggct acacactagc atcaagttac tgtaggccaa acattataca tgggggagta      1140
     tccatataca taaataaaag tttaaatttg caatattcag ccatagatct cactagccta      1200
     tgcgtagaag gtgtctttga agcaactgct gtggtactgc acactcaaaa agttgttatt      1260
     gcaactgttt acagaacacc aggaactgat gaagaaattt ttgaaaaaca actctctgct      1320
     gtaatcttaa acattgctaa atacaagcac tataaatttt ttataacagg agacattaat      1380
     atagatgtaa gaatcaacag aacaaatgtg gttagctttc taaatatgtt aagttcattg      1440
     aatttttgct gcctcaatga aaaaccaacc aggatggatg catgccttga caacataatt      1500
     agcaatattt gtagaagtca agttgagtgt gacaccatca aactgggaat atctgaccat      1560
     gatggcatat ggctcagaat tagtaatcta cctactgaaa atacaagtaa gttaattaca      1620
     cacagacttc taaamaaaga gaatattgaa agaatgaaaa atgaattgaa attaatagag      1680
     tggtccagca tattatctma cgaggaagat gtaaataaat gtttctccac cttcatctcc      1740
     caattaaaac tcacactaga gactaactgc ccccgtatca ctaagagaag tagcagtcat      1800
     aaaaggcaca aaccacaaca tacaaaaaac tggtacaccc ctcaccttga taaaattagg      1860
     atacttctac ttatgttgaa ggctaaagct gctaccaact gtgagaacaa ggaagactat      1920
     atacgactga gaaaaatcta taaatctgaa atcagagcag caaaaataaa ggcaaatgaa      1980
     aaatacattt caaattctaa aaacaagtgt aaagcagcct ggactgtagt aaaaaatgaa      2040
     ataaatgtag gaaaggaaga aaccactgtc ccacttaact gtaatattct taatgaatat      2100
     tttgtaaatt gtgcaagttc ccttgtaaca caaaatgata atacttcaga tgctgagacc      2160
     ttccttttgc aatcaaagaa taaaacaaat gaaagattca cttggaaaaa aattagtgct      2220
     atagatattg ttaaggcagt aaataagttg aatacctcca gaactgagga ctactatggg      2280
     ttcagtaact atgtactaaa aggtataatt atggaaatta aaatgcctct gctctatctt      2340
     gtaaacaaaa ttcttgaaga tggcattttc cccgaatgcc ttaaaatcac agttactctt      2400
     ccaatattca aaaagggtga cagacacaaa ccagaaacta tagaccaata tcaattgtcc      2460
     ccataatatc taaaataata gagagctgca tacatgtaca gatatacaag tattttgaga      2520
     ataataactt actgaatgaa agtcagtttg gatttagatc aaacctctca accataaaag      2580
     ctgtcgaaag tctgataact gcaattcatg atggttatga aaggaagcag accatgtgtg      2640
     ctacacttat agacctaagt aaagcttttg actctgtatc acatgagatt attgtaaaaa      2700
     agctagaata ctatggtgtt gcaggtmaag cattaaattt atttaaatct tatctgagca      2760
     gcaggcaaca actagtgtat gttaacaagg agaggtcaaa actaatgaca attaagagag      2820
     gaatcccaca agggtccgtc cttggaccat tcctttttat tgtcaatatt aatgattttc      2880
     caaactatat atcctgtaaa aatgtgctgt atgcagatga tatgacaatg attatatctg      2940
     gtgaaaataa acaggtagtg aaagacaaaa ataaggaact atttgaaaaa agtaatcagt      3000
     ggtgtaaagc taatcagtta tgtataaata caacaaaaac tgaggaaata tattttaacc      3060
     taaaggtacg gaaagaagac aatcaatgtg ttaaactgct gggcctcaaa atagatcaaa      3120
     gactttcttg ggatgatcaa ataaaacatg tctctagcaa actcgcacgt gtgatttttc      3180
     tattgtataa actaagacag tgtgtaaaca aaaaattact gattctctgc tactatgcat      3240
     tctttcagtc acagctgcag tatggggtac tgttatgggg aaatgcacca gatacatccc      3300
     ttatcttcaa attgcagaaa aaagcaatta gatgtataca agggctggga cctagagaat      3360
     cctgtaggaa acacttcagt gagctcagta taatgacact cccaagtctc tacgtgtact      3420
     actgtctaat atatataaaa gaaaatatac agaaatttac tgtcagagtg aacgtacaca      3480
     cgcacaatac tagaaacagt actatgttag atatccatac tcaagactgt cactgataca      3540
     taacagccat aaacacctag gtcttaaatt atataataag ctaccacagt ctgtaaaaat      3600
     ccttacatta agtaatttta agacagcgtt agaggtatgg ttcaaaaaga cgccatatta      3660
     ctcagttgaa gaatacctcc aaagtaactt ggagaatatg cacaattaaa ttaaattcac      3720
     agattgatag caattaagat gtataatgac agataattat ttatgtaaaa gaaaaactgt      3780
     aataatgtgt aaattatgta atcaatttgt aatctaaaaa gataaaatgt atatgtaaac      3840
     cccatatgac gaagccaatt gcatggtaaa catgctgaaa ggctaataaa taaacaaat       3899
//
ID   Daphne-54_LMi repbase;    DNA;    INV; 4157 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 20.01, Created)
DT   12-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-54_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4157
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 183-183 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(930..1145,1149..1397,1401..1787,1963..2685,
FT                 2625..3203,3151..3777)
FT                 /product="Daphne-54_LMi_1p"
FT                 /translation="ENDFIVCMMGSNYVDKNKANVCMKELQLFLEMNKTRN
FT                 TVVATVLHRYDLIYSSSVNAKIRRTNIKIKEICSQANCDVLDISKLPRNLH
FT                 IKHGLHLTYEGKKFVCQCINEILQERLEHNKTIFVNSGSNSNSKHTPQTST
FT                 KEINIFQQKWKLEYGQINQEQMERRHATSRQPSSQIKGKARIKKKQTELQL
FT                 AVYVGQHAIRSHNREIRIFGGTRLAAAPLEDNTQASTTATPICVQETKKMK
FT                 LSQIKRLKMSLISEYCIKMFSMLHKKQRKLKCYLLLKYPKFSQSNSDSNKF
FT                 SRGKVSSTWAIFCSSSSIKDFLIELEVLLDKAIKEXPYLIVAGDFNINTLI
FT                 QSSDAKCFHDXVNSFNMKMHVNSPTRRTKSSQSLIDHVCANTPLNKLKVQV
FT                 INTVLSDHDGQLIEIQSKKPEAGKIVLEKRLTNPGNLNILEVLLXSEDWKA
FT                 VYENDVEQSWETFTSTLSHYINVACPKVHKKINPRHNKKWITSEVMNARKN
FT                 LKELYEQCKKLTVKQTMKCTERRRKNIANEINSQADNEMHREKKKEYSKLI
FT                 RQAKSRYYKQEIEMSSNISKTVWSHINTNRSETRKAGSGNIVLTTQGKELT
FT                 DPHEVCSTLNQYYVEIVQKLMKQNPALPKKSTGSPEINKCLFLFPTDETEI
FT                 MNIIRSLKNKETEGLDGISAKVIKHCSQYLAKPLTFLVNLVMEKGHFPTCL
FT                 KKSKVVPIYNGDKGSWKLKRVKWCQSIMVTRDPGNYRPITITPTLSKIVET
FT                 AIKNRIIKFREEQNILDEAQHGFRKGKSTKTAVVSFMTHIYRALEEQKKVC
FT                 SVSLDLSKAFGCVCHSTLVHKLHRYGIRGNAANLIKSFIENREQSVEIKHT
FT                 TNNMVETVHSDFQVVKYGVAQGLVLGPLLFILYVNIWHCRRKKMQSVCRHT
FT                 SLIVSSTSVSDLETRKSWTWKVK"
XX
SQ   Sequence 4157 BP; 1678 A; 664 C; 782 G; 1030 T; 3 other;
     ctaaagattc ctggatttcc actagtcaat tcattctgca ggaccaacta taaacatgag        60
     tgacagcttt ttttaataga atccaagtta taaagcaatc caaaactatc ctgaacttat       120
     taaagacaaa gtcttcgaaa tgtccactat tgaacttatt gacaagaaca agcacctagt       180
     tattgtagct gtatacagat atcctgatgg agatatcgaa gaattcttga gcaaatctga       240
     aattatgtta aatattgtag aatgaacaaa aaattaaatc acttgtagtg acttttatgt       300
     tggcagtaaa ccctacagta aatactccaa caagaatcac taagcatagt aatacaacaa       360
     caccaaatgt ttattccaga aaccctttat tcatacatac ataaaacaac tatggccacg       420
     agtgtaatgg ggtgtaattc cgatgtgaaa aaggttacag ttatgtggtc aaacagagag       480
     tttgcgagaa ttgttatgtt gaagtgacaa atctgagaga acgtatttca agcctacaat       540
     tattagtaaa caatttaaga agtgaaatcg ccactctcaa gaaggaaaac cgagacctac       600
     aagtgatgca gaaatcaagt gatgtgattg tgatgcaaga tgaaaattct caactgttcg       660
     agtgaaaaga tgtgatgcac aaaaaaggta ggaattcggt cgcaaaatgt gcaacaaaaa       720
     tgaatgaaca ctcaggaaaa gaagaaatta aaaaatacag atcagctgtg aaaaagaatg       780
     gtgtcctctt actaacagac agtcatgcca gaaatatacc ttgcattctt tgagaaataa       840
     acaaagacat ggctgtgact agtgtgatga aacctggagc aggatctaaa cacatcgtag       900
     gcgccaatat tcaaataaaa ttgtcatgag aaaatgactt tattgtgtgt atgatgggat       960
     caaattatgt tgataaaaac aaagcaaatg tgtgtatgaa agaactgcaa ctcttcttag      1020
     aaatgaataa aacaagaaat actgttgttg ctactgtgct gcataggtac gatcttatct      1080
     acagttcatc tgtaaatgcg aaaattcgaa gaacaaacat taaaataaag gaaatatgct      1140
     cgcaataggc aaattgtgat gtgctagata taagcaaact gccacgaaat ctccacataa      1200
     agcatgggtt acatcttact tatgaaggca aaaagtttgt ttgccaatgt atcaatgaaa      1260
     tattacaaga aaggctagaa cataataaaa caatttttgt taatagtggt tcgaatagta      1320
     acagcaagca cactccccag acatcaacta aggaaataaa tatattccaa cagaaatgga      1380
     aactagaata tggacagtaa ataaaccaag agcaaatgga aagaagacat gctacaagca      1440
     gacaacccag cagtcagata aaaggaaaag caaggatcaa gaaaaaacaa acggaattgc      1500
     aactggctgt gtatgtaggt cagcacgcaa taagaagcca caacagagaa atcaggattt      1560
     ttggtgggac cagacttgca gcagctccac ttgaagataa tactcaggca agtactacag      1620
     ccacccccat atgtgtccaa gaaacaaaga aaatgaagtt aagccaaata aagagactga      1680
     aaatgagctt aatttcagaa tattgcatca aaatgttcag tatgcttcac aaaaagcaga      1740
     ggaaattgaa gtgttactta ctgttgaagt accccaaatt ttcacaatga ctgactgaag      1800
     gataatgaaa tgaagtctta taatttacag agttataata gagtgtcata tttctgtaga      1860
     tctgaacata agagtggtgg tgtagctttg tatgtagata acagtcagta tgagtgaatg      1920
     tgttcattgg gcagttaaaa actgcaaaca aatgtttttt gaagcaacag cgattcaaat      1980
     aaattttcaa ggggaaaagt gtctagtact tgggctattt tctgttcaag ctctagtata      2040
     aaagatttct taatagaact tgaagtacta cttgacaaag ctattaagga atwcccatac      2100
     ttaatagtag caggtgactt taatataaat acattaatac agagcagtga tgcaaaatgt      2160
     tttcatgatg wtgtaaattc atttaatatg aagatgcatg taaacagccc aacaagaaga      2220
     actaaatcct cacagtcact aatagatcat gtttgtgcaa atacaccttt aaataaattg      2280
     aaagtccaag tgataaacac agtcttgtca gatcatgatg gtcagttaat tgaaatacaa      2340
     agcaagaaac ccgaagctgg aaaaatagtc ttagaaaaaa ggctaacaaa tcctggaaat      2400
     ctcaacatat tagaagtatt acttwgatca gaagactgga aagctgtata tgaaaatgat      2460
     gtggaacaaa gctgggaaac tttcacttca accttaagtc actatataaa tgtagcttgc      2520
     ccaaaggtcc ataaaaagat aaatccaaga cataataaga aatggatcac ctcagaggtc      2580
     atgaatgcca gaaaaaattt aaaagagtta tatgaacaat gtaagaaatt aacagtcaag      2640
     cagacaatga aatgcacaga gagaagaaga aagaatatag caaattgata aggcaagcaa      2700
     aatctaggta ttacaaacaa gaaattgaaa tgtcatcaaa tatctccaag acagtctggt      2760
     cacacataaa tacaaatagg agtgaaacaa gaaaggcagg aagtgggaac atagtactta      2820
     ccacacaagg gaaagaactg accgatccac atgaagtgtg ttccacttta aatcaatact      2880
     atgtagagat agtacagaag ctaatgaaac aaaatccagc attgcccaaa aagagtacag      2940
     gttcaccaga aataaacaaa tgcttattcc ttttcccaac agatgaaaca gaaatcatga      3000
     atataattag atcactgaaa aacaaagaaa cagagggcct agatggaata tctgcaaaag      3060
     taattaaaca ctgttcacag tatctggcaa agcctttgac attcctagta aacttggtaa      3120
     tggagaaggg ccattttcca acatgcctga aaaagagtaa agtggtgcca atctataatg      3180
     gtgacaaggg atcctggaaa ctatagacca ataacgatta caccaacctt atcaaaaatt      3240
     gttgaaacag ctattaaaaa cagaattata aaattcagag aagaacaaaa tatcctggat      3300
     gaagcacaac atggatttag gaaaggaaaa tcgaccaaaa cagcagtagt aagtttcatg      3360
     acacacatat acagagcatt agaagaacag aagaaagtat gcagtgtttc cctggatcta      3420
     tctaaagctt ttggctgtgt atgccactcc actcttgtac ataaattgca cagatatggt      3480
     atcaggggaa atgcagccaa tctaataaaa tcattcatag aaaacagaga acaaagtgta      3540
     gaaataaaac atacgacaaa caatatggtg gaaacagttc actctgactt ccaagtagtg      3600
     aagtatgggg tagcgcaagg cttggtgctc ggtccactac tgtttatact gtacgtgaat      3660
     atatggcatt gtcggcgaaa gaaaatgcaa agtgtatgca gacatacatc cctcattgta      3720
     agtagcacct cagtgtctga tttagaaaca cgaaaatcct ggacatggaa ggtcaaatga      3780
     atatttaagt gaaaacaacc tatttataaa tcaaaagaaa acaacattca tgaaactact      3840
     atccaagaga ggaacaaatg aagaggaatt aactataaga ctcaagggag aaaaagtaac      3900
     agaagttgac agtaccaagt tcctgggatt gacgatagat tcatgacttg ggaaaactgt      3960
     atagaaaaga tctgcttaaa aattagcagc agtatattct taatgaagaa aatgtcacat      4020
     acagttgatg cagatactct aataaaaatg tactatggac tcattcaccc acatttgttg      4080
     tatggcataa taatatgggg aagagcacct aatgtgtata taaatagact gctgaagcgg      4140
     aaaaaaaaag taaaaaa                                                     4157
//
ID   Daphne-55_LMi repbase;    DNA;    INV; 4205 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 20.01, Created)
DT   13-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-55_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4205
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 184-184 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(916..1161,1119..1292,1267..1515,1609..2076,
FT                 2168..2605,2566..2850,2769..3236,3247..3672,
FT                 3603..4082)
FT                 /product="Daphne-55_LMi_1p"
FT                 /translation="MGSWLIISGIIKRRSVSNKYICKLNCTIKEQCDELGA
FT                 VFIDPNKFLNENCLGKDGLHMNRLGSRTLSRMFTDVCKIIKNKGNDVYRRL
FT                 QNNKKQGKLKWPDGDEKQNTPAEKSKNRVKYHSKNEGGQDIDLKIGFSASK
FT                 DKLVSQHPRIEQQGTGAGDFSSENKFDLLCLSEHWATKDELPVCKLENYSL
FT                 INSYCRRVNKRGGWQSCWQINQLLLQLRSRSSVHIPRKIGHPFMCTNRDKF
FT                 NNYDIVIGGDVNSEFDILTDKHSVSELKNLLRQFNIQCVNYKPTRELACLD
FT                 NIFVNFQCAQEQCDVTVFPFSDHESVHLIYANRISSVNHSVPTQXXWSLXQ
FT                 XVMQKSTSSRNPLLIEIGFAREMMAVIIYQIMIQLRKKVSKKKNSWYTKTL
FT                 SDMKDHVLMLLQTYKTTKSENAKSLYVRWRNDYKIAVIEAKKSHNAQLIES
FT                 SNNKCRAAWNLINSFVKDSHKVQINISPQDFNDYFIESIEEISNSICKPDT
FT                 SPIELLEKNYHGTTYNNFLTFSRFHLVQYQLSHFLEVSPSTILKIVMNFKS
FT                 SDSVDIYDMSCNLLKKIIDSIVCPLTHCINKCMAEGYFPEELKLSRVVPCI
FT                 KRVIKTMQQVSDQYQWFPHWPKGGPVYKKGDKDNAASFRPISMVPALAKII
FT                 EYIIYHQLYAHFENLEIFNAAQFGFRKKSSTIDAIDVLMRYVLKVYEEKGF
FT                 AQATFCDLSKAFDCVKHDILLKKLHFYGIRDKSLKLLASYLENRRQVVSIG
FT                 TEKSTEKKVNVGVPQGSVLGPFLFLRLPSYTISNTVLFADDTTFLNCNNNL
FT                 NKLKDSVENTLAQASYWFRSNGFLLNEDKTQKMVFSLRDKSPFNEPSYVKF
FT                 LGVYVDDKLSWAQHTKYICTKLSRVIYLLRCLMKYVPAAFVKTSYFAFFQV
FT                 LCLMDLFSGKLKPCNIILCILSSIMSYGLILWETQAMLTMYYFYKKTTIRI
FT                 ITCSQNKAHCKPLFTDCKIMTIINLYIYQVLIYTKKKLQEVKRRNNIHGHN
FT                 TRKNNSIHTSYNRLTKTINSYELVGHKLFNKPLQMVQDLPEEAFRKALNKW
FT                 LIANPFYELKEFFDCECDMEI"
XX
SQ   Sequence 4205 BP; 1579 A; 712 C; 768 G; 1141 T; 5 other;
     ggtaaaaatg caaaaattta acagttctct gtgtaaagaa tgtaacagaa aagtgattaa        60
     agggatccta tgcgttaagt gtaactactg gttaacgaaa gtgtgccaaa ataaacttaa       120
     aatacgtcag cgacgatgtt tcatggacat gtcttgtttg tttacattcc gaaaccgcag       180
     aactcggaaa agaagtgaag acaaaaagtg aaattatcaa gatcctgcaa aatgacattg       240
     acgtgctaaa acgtgaaata tcattcttaa gcagaaaacg tcaaattatt acgcgaaaaa       300
     gagctagtgt ccgaaagcat gcaacaaaaa caaaataaca ttgcatgaag tcgtgtacgc       360
     cagtagcaag acagaaaatg acaaaataac caggtgaagg aaataataga tcaataagag       420
     ggaaacagtc cagtgcttgt gaaatcgtgc aaatggaaac aaaacaatac cataaaaaat       480
     cgtgtgctac ataggcctac aacgaccaaa atttcaggct gacatatcaa tgtccctatg       540
     aactacaggt aacttcaaaa actcaaaact ctgaggataa atatcaacgg agtcggtaac       600
     atacaagaaa aaaaggcagt gaacaagcgt acaaactgat gaaaacgaat wtctacttat       660
     tggtgattct ttagtgaaaa atgttgttat tccaggatgc aaaattgatg tgcgacctgg       720
     aatcaaaaca cagcagctca acaaacactt aaaatgtgga aaattcaaac aagaacgctg       780
     cagaaaacga actgaagcac aagtatagtg gtgtgttaat acacgtcgga ctatgtcaat       840
     tctataaaat gtaacagtga agaggaaatc acaagtgaga caagaaatct gattcgctta       900
     gctagaagtg tttacatggg ttcctggctc ataatcagcg gaataataaa aagacgatct       960
     gtaagtaata aatacatctg caaactaaac tgtactataa aagaacaatg tgatgagctt      1020
     ggagcagtgt tcatagaccc gaataaattc ctgaacgaaa actgtctagg aaaggatggt      1080
     ctgcatatga acagattggg gtctcgaaca ttaagtagga tgtttacaga cgtttgcaaa      1140
     ataataaaaa acaagggaaa ctaaaatggc ctgatgggga tgaaaaacag aatacaccag      1200
     ctgaaaaatc aaaaaatagg gttaaatatc attcaaaaaa cgagggaggg caggatatag      1260
     atctaaaaat tggtttctca gcatccaagg attgaacaac aaggaactgg tgcaggtgac      1320
     ttctcgtctg agaataaatt cgacttgttg tgtttaagtg aacactgggc caccaaagac      1380
     gaacttccag tatgtaagtt ggaaaattat agtttaataa acagttactg cagaagagtc      1440
     aacaagagag gtggttggca atcatgctgg caaatcaatc aattgctctt gcaacttaga      1500
     tctagatcat ctgtgtgatg aaatgaactt tgaagccacc ggtataataa ttatcaatat      1560
     gaagctaata gtagtatcat tgtacaggtc tcccagtgga agtattagca tattcctaga      1620
     aaaattggac atccttttat gtgcactaac agagacaaat ttaacaacta tgacattgtc      1680
     ataggaggtg atgttaattc tgagtttgac atattaactg ataagcacag tgttagtgag      1740
     ttgaaaaacc tattacgaca gttcaatata cagtgtgtta actataaacc cactagggaa      1800
     ctagcatgcc tagacaatat atttgttaat tttcaatgtg cccaggaaca atgtgatgta      1860
     acagttttcc ccttttctga ccatgaatca gtacacctaa tatatgctaa taggatctcc      1920
     tcagtcaacc atagtgtacc aactcaaawa tgstggtcac tagsccaatk agtgatgcaa      1980
     aaatcgacaa gttcaagaaa tcccttgctg atagagattg gttttgccag agaaatgatg      2040
     gcagtcatta tctatcaaat aatgatacag ctgaggtaaa ctttaaatgt ttctttaact      2100
     ctttcctgca aatattcaat gatagtattc ccattaaatg ttgtaaagca atagacagag      2160
     gtagtaaaag aaggtgtcaa aaaagaaaaa ctcttggtat actaaaacac tgtccgatat      2220
     gaaagaccat gtattgatgc ttttacagac atacaaaact actaaatctg aaaatgctaa      2280
     atccttatat gtaagatgga gaaatgatta taaaatagca gtaatcgaag caaaaaagtc      2340
     acacaatgcc cagctcatag agagctctaa caataaatgc agagctgctt ggaatctcat      2400
     aaacagtttt gtcaaagatt cacacaaagt ccaaatcaat atctctccac aagattttaa      2460
     tgattatttt attgaatcca tagaggaaat aagcaatagc atctgtaagc ctgatactag      2520
     tccaatagaa ctcttagaaa aaaattacca tggaacaacc tataacaact ttctcacttt      2580
     ctcgaggttt cacctagtac aatattaaaa atagtaatga actttaagtc atctgatagt      2640
     gttgatatct atgatatgtc ttgcaacttg ctgaagaaaa tcattgattc catcgtctgt      2700
     ccgctaactc actgcataaa taagtgtatg gcagagggat actttcctga ggagttaaaa      2760
     ttatctaggg tggtcccgtg tataaaaagg gtgataaaga caatgcagca agtttcagac      2820
     caatatcaat ggttcccgca ctggccaaaa taatagaata cataatctac catcagttgt      2880
     atgctcattt tgaaaatctt gaaatattta atgcagcaca atttggcttc agaaaaaagt      2940
     cgtcaacaat tgatgcaata gatgtattaa tgagatatgt ccttaaagtg tatgaagaaa      3000
     aaggctttgc acaggccact ttctgtgacc tgagtaaggc cttcgactgt gtaaaacatg      3060
     acatacttct aaagaaactc cacttttacg gcatcaggga taaaagccta aaactattag      3120
     catcctatct cgaaaaccgt aggcaagttg tgtcaattgg cactgaaaag tctaccgaga      3180
     aaaaggttaa tgtgggagta ccacaggggt cggtgttagg accatttttg tttctgtagt      3240
     gattaacgtc taccctccta cacaatttca aatactgtac tatttgcaga tgacaccacc      3300
     ttcttaaatt gtaataacaa tctgaacaag ttaaaagatt ctgtggaaaa tacacttgct      3360
     caagcatcat attggtttag gtcaaatggg tttcttctga atgaggacaa aactcaaaaa      3420
     atggtattta gtctcaggga caaaagccct tttaatgagc ccagctatgt aaagttcttg      3480
     ggggtatacg ttgatgacaa attgtcctgg gcacaacaca caaaatatat ttgtactaaa      3540
     ctgtcaagag taatttattt attacgatgt ctcatgaaat atgtaccagc agcctttgtt      3600
     aaaacatcat actttgcatt ctttcaagta ttatgtctta tggacttatt ctctgggaaa      3660
     ctcaagccat gttaacaatg tattacttct acaaaaaaac aacaatcaga atcatcacat      3720
     gctctcaaaa taaagcacac tgtaagccat tgttcactga ctgtaaaata atgactatta      3780
     taaatctgta catatatcaa gtgctaatct acaccaaaaa gaaactgcaa gaagtaaaac      3840
     gtagaaataa tattcatggc cacaatacaa ggaaaaataa ttcaatacac acatcataca      3900
     atagactaac aaagaccatc aacagctatg agctagtggg tcataaatta tttaataagc      3960
     ccctgcagat ggtacaagac ctaccagagg aggcatttag aaaagcatta aataaatggc      4020
     ttattgcaaa ccccttttac gaattaaaag aattttttga ctgtgagtgt gacatggaaa      4080
     tataagtgaa caactgacat gcagcactgt tatatttagt aatgtaatgt gaaaatattg      4140
     taatgtaatg tttatactat tttgtccatt gctgtaatgg cctaacgaca ataaaattat      4200
     cttat                                                                  4205
//
ID   Daphne-56_LMi repbase;    DNA;    INV; 4440 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 20.01, Created)
DT   13-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-56_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4440
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 185-185 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(632..1195,1189..1572,1551..2048,1981..3369,
FT                 3351..3542,3571..3810,3749..4093)
FT                 /product="Daphne-56_LMi_1p"
FT                 /translation="MVQLAMEAYFKAFSTDRKQKTTHQLEITMWLKPRRQE
FT                 NNNQVLKQSQITRWFEPKKREVNESQILQASKTTSPLDRLQEAEATAPEEP
FT                 PMTVSPLDLHQDAKATAPEAGLQQRTVLPVSCNLRHRRNTSKEEDFFLSTF
FT                 EKDKNLIFPNNAVSSCIDSYDPQHQIPTKISGNPQQGTTQPNTESIRLIAN
FT                 LKIYVHNVQGLKSKLSELEILLSSECDLSDTQILCLNEHFMRSFELESVVI
FT                 PHFKLLDHFSRASRKCGGTCIFVKDSITATPLDICTSHSIEKEIELSGIVL
FT                 PDFNTYLITLYRPPDGNMNSSIKIHELFYKNLASVAEKLCKRKSYRILICG
FT                 DFNIDFLTENPSHLNLKNLMSSYNLNLMVNSPTRITKHSITCLDQVASNIN
FT                 CTVSSVKLGFSDHNALIVWVNLHANNPKCNKTVVQSRNFNKNHMHTFLHDI
FT                 QNENWQNVYEAPTVDSKYEAFFGHLLLLLQLSLPVTNTANMKLFLDTFCYY
FT                 FNCHFPLQTRSINRLKKPSNWITPGIIKSSQRKRELYNISKTELGSSEEFK
FT                 KFFNAYKKIFRKVVNAAKKLQNDNYLKASSNKSKSTWQLINMNTNRGPQPQ
FT                 SDINLKVNGKTILNKKEVAEEFNTYFTKTVENLANHLTSNSYLKLKPNLCS
FT                 NTLFLMPTSQNEIVKTIHNKIKRKSSAGPDQIPCFLLHNCSNFISKPLAHI
FT                 INFSFMNGTFPSKLKIAKIIPIHKKGSKEDPSNYRPIALLSVFSKVFEYIM
FT                 ATRLMSFLNKNNILSPAQFGFQRAKSTSDAIQEFLDHTLELVDKKLPAIGI
FT                 FLDLIKAFDMVNHSILMQKMHSYGIRGTAYDWFSSYLTYQQQYIEINDLKS
FT                 SEAVSTVQSSTQIIKQGVPQGSVVGPLLFLLYINDLPENLPDTKTILFADD
FT                 TSILVSASEEALQSTLKSTTDKLSTWLQGNRLLLNVKKTIGCQEDNWITFH
FT                 TAQNTNPVVPNISLEDNVINLENEVKFLGISINENLLWKKHINLTALNLVK
FT                 YVLPKYTNNNVSCPFPLSLCYGIMFWGHSSEAVKLFKLQKRVVRIIMFKKQ
FT                 RDTCKPLFRKLNILPSMSVHIGNPMFYQKNYQISCPPCQYILEILCFTKKT
FT                 INNLETNMDYHQYHTRSKTFLRLPSHSTKLYSNGVKYMGVKLFNHLPKPIK
FT                 EIQEISKFKRSVKSLLMKHCFYSVQEYMESKCLKINCSHPSQIDR"
XX
SQ   Sequence 4440 BP; 1654 A; 936 C; 699 G; 1151 T; 0 other;
     ctgtgttgtg cctgccactg agcattcaaa gaacacacca tctaaagtag aaaaatcagg        60
     aaacgactca caaaaagcaa acaagccgtt gctcattgaa cctccaacgt caagagaggc       120
     aaaatccatc aaaatctgtg tattaggtga tagtcatggc cgtggaattt ccgcagcatt       180
     aactggaaaa tatgaattca ttgctaccgg attcgtgaag cctggtgctc cattccgtga       240
     actaaaaacc tacaaaatca aattatgtaa cgagtttgac gaaggacgat tttgttgtgt       300
     tgctaggagg atcaaatgac gtctatagaa atgagacttt caaggctgct acagaactga       360
     gaagatgtct aaacaactta agatacaaat gtacttgttg tgaacatccc acagcgcatg       420
     atataccgag ctggtcttgt gtgaaccgcg aaattactgc tgcaaacatg agctgctccg       480
     aaatatgcaa tgacttcgac aatgcccatg ttattgacat aaaagtctgg agcgaaggtt       540
     cttcacagct cacggtcttc atttaaacgc aacagggaag gaaaaacttg ccgaaaaaat       600
     ttatactaca ttttacgtga caacagcgta aatggtacaa ctggcaatgg aagcatattt       660
     caaagcgttt tcaacagaca ggaaacaaaa aaccacgcat cagttggaaa ttacgatgtg       720
     gcttaaaccc agaagacaag aaaataacaa tcaggtccta aaacagtcac aaattacgag       780
     atggttcgag ccaaagaaga gggaagtgaa tgagtcacaa attttgcaag cttcaaaaac       840
     aacttcgcca ctcgatcgtc tccaagaagc agaagccaca gcacctgaag aaccaccaat       900
     gacagtttca ccactcgatc ttcaccagga cgcaaaagcc actgcaccag aagcaggtct       960
     acaacaaagg acagttctac ctgtaagttg taatttaaga cataggcgga atacatccaa      1020
     ggaggaggat ttttttctat ccacctttga gaaagataaa aacctaatat ttcccaataa      1080
     tgctgtgtcc agctgtatag attcatatga tcctcaacat caaattccaa ctaagatatc      1140
     aggaaatcct caacagggta caacacaacc taacacagaa tccattaggc taatctaaaa      1200
     atctatgttc ataatgtaca aggactcaaa agtaaactaa gtgagttaga aattctatta      1260
     tcaagtgaat gtgatctgtc agacacacaa atattatgcc ttaatgaaca tttcatgagg      1320
     tcctttgaat tagagagtgt tgtgatacct cactttaaac ttttagatca cttctcaagg      1380
     gcatctcgta aatgtggagg aacttgcata tttgtcaaag acagcattac tgctacaccc      1440
     ctagatatct gcacttccca tagtatagaa aaagaaatag aattgtcagg tattgtgctt      1500
     ccagacttta atacctattt aataacactc tatagacctc ccgatggtaa catgaactct      1560
     tctataaaaa tctagcatca gtagcagaaa aactatgtaa aaggaagtca tacaggattc      1620
     taatatgtgg tgacttcaat atagatttcc tcacagaaaa cccaagtcat ctaaacctaa      1680
     aaaatttaat gagtagctac aacctcaatc tgatggtaaa ttctccaacc aggataacaa      1740
     aacacagtat cacttgcctg gaccaagtag ccagcaacat aaattgcact gtatcttctg      1800
     tcaaactagg attctcagac cacaatgcac taattgtgtg ggtcaacttg catgcaaaca      1860
     atcccaaatg caataaaact gttgtacaga gcagaaactt caataaaaac cacatgcaca      1920
     ctttcctcca tgatatacag aatgagaact ggcaaaacgt atatgaggct ccgactgtag      1980
     acagcaaata tgaagctttt tttggacacc ttctgctact acttcaattg tcacttcccg      2040
     ttacaaacta gaagtatcaa tagacttaag aaaccctcca actggatcac ccctggaatc      2100
     atcaaatcgt cccaaagaaa aagagaactt tataacatta gcaaaactga actaggtagc      2160
     agtgaagaat tcaagaaatt ctttaacgca tataaaaaga tatttaggaa ggtagtaaat      2220
     gcagcaaaaa aactacagaa tgataactac ctcaaagcat catcaaataa aagtaaatcc      2280
     acttggcaac ttattaatat gaacacaaat agaggaccac aaccacaaag tgacattaac      2340
     ctaaaggtaa atggaaaaac aatcctcaat aaaaaagaag ttgccgagga attcaacacc      2400
     tacttcacaa aaacagttga aaacctggcc aaccacctta caagtaactc ctacttaaaa      2460
     ctaaaaccta acttatgctc aaatacacta tttttaatgc ctacttctca aaatgaaata      2520
     gtaaaaacaa ttcacaacaa aattaaaaga aaatcatctg ccggaccaga ccaaatccca      2580
     tgctttcttc tgcacaactg cagcaacttt atcagtaaac ccttagccca tataataaac      2640
     ttctcattca tgaatggtac attccccagc aaactcaaaa tcgccaaaat tatacctata      2700
     cacaaaaaag gtagcaagga agatcccagt aattatagac caatagcact gctctctgtc      2760
     tttagtaaag tctttgaata cataatggcc accagactta tgtcctttct aaataaaaat      2820
     aatatcttgt cacctgccca atttggcttc caaagagcta aatcaacttc tgatgcaata      2880
     caagagttct tagaccatac actggagctt gtcgacaaga aacttccagc cataggaata      2940
     ttcttagatc taataaaggc attcgatatg gtaaaccata gcatattgat gcaaaagatg      3000
     cactcctatg ggataagagg aactgcctat gactggttca gtagctatct gacatatcaa      3060
     cagcagtata ttgaaataaa tgatttgaag tcttccgaag cagttagcac cgtacaatct      3120
     tccacacaaa tcatcaagca aggcgtaccc caaggctccg tcgtaggccc gctgctgttc      3180
     ctactctata taaatgacct ccctgaaaac ctacctgaca ctaaaaccat tttgtttgcc      3240
     gatgacacct ccattcttgt atctgcttcc gaagaagccc tccagtctac cttaaaaagt      3300
     accacagata aattaagcac atggctacag ggaaacaggc tactacttaa tgtcaagaag      3360
     acaattggat aactttccac acagcccaaa acactaaccc agtagtaccc aacatatcac      3420
     tggaagacaa tgttatcaat ctagaaaatg aagttaaatt tttagggatc tccataaatg      3480
     aaaatctatt gtggaaaaaa cacattaatt taacagcact aaacttagta aagtatgttt      3540
     tatgatcagg tcaataagga atatcactaa cctaagtaca caaacaacaa tgtatcatgc      3600
     ccttttccac tcagtctctg ttatggtata atgttttggg gccacagctc tgaggcagta      3660
     aagctattta agctacaaaa aagggtagta agaataatca tgtttaaaaa gcaaagggat      3720
     acatgcaaac cattattcag gaaactaaat atcttgccct ccatgtcagt acatattgga      3780
     aatcctatgt tttaccaaaa aaactatcaa taatctggaa acaaatatgg actaccacca      3840
     ataccacact agatccaaaa cctttttaag attaccctcc cactcaacaa aattatatag      3900
     taatggtgtt aaatatatgg gagtgaaatt atttaatcac cttccaaaac caataaaaga      3960
     aattcaggaa ataagcaaat ttaaacgatc agtgaaatct ctcctaatga aacactgctt      4020
     ctattcagtt caggaatata tggaatcaaa atgtcttaag ataaactgca gccatccctc      4080
     ccaaattgat agatagactg caatcatcct tcacaaatac ataaacacct gtaaaaccac      4140
     agcttgatgt acctattgga tcaaagtaga aaaaattgta ttaggtcaat tagattaaat      4200
     aacattctgt attatgctcc accttgaatt agctttaaaa tatgttgtat ggtactgatt      4260
     tacattgctc acctctgtaa ttaactttaa ttatctgaca aaataagttt tattgtaccg      4320
     agatattact tgcattataa tcacacaagt gtactgtaag ctatgccact gtattgacat      4380
     atcccatatc aagtgtacaa tcccttgtac aaatctgatt tatgggacaa ataaataaaa      4440
//
ID   Daphne-57_LMi repbase;    DNA;    INV; 3522 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 20.01, Created)
DT   13-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-57_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3522
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 186-186 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(177..599,587..1060,1039..1263,1239..2060,
FT                 2041..3252)
FT                 /product="Daphne-57_LMi_1p"
FT                 /translation="KTTYIVTTAEHRRAKDQEDLLCVRIFYGFSTRRKAVT
FT                 NQPGDSSNTQVGAKSSVTVQESQCSFRIIHQNFGSLGNKHNDLDVLAFVNK
FT                 PDVLVITEHWYPKDKISVMHPLMMNLCSSYSRMNKSGGGVAIFAKSGSNFI
FT                 VSFYCVIDVSSLSVEGVIELSAINYRWERQHIIIVGVYRPPSANIDIFLTN
FT                 LNQLLVEIDNKYSGKNGCINIIITGDINIDTLSNNSTTKRLQLLLQEFNLN
FT                 LLIKEPTREVGGTRTCLDNIITNMDKFTYKTAVLKLAISDHHAVEFQCVPN
FT                 INLHLVKHKPPPGKMKRYETKRTINDKNIRNLTHVLQSATWAETNCYSYEN
FT                 FASDFFYYFDMTCPTKSVIVNNNEKCRKVPGRKMQKSTWIDAEVTQARNML
FT                 TLFQCKMLENRENTKLKEAFNKYHEYYKNLIGDKRSKHVAHILNNGNNTAA
FT                 CIWNVINSFRAGKDNVINDLVISYNGSVIECQQDIANIFNEYFSSVGKSIN
FT                 DRLHNNKYAFKGKASSYSIYFTPTNSNEIRNIVKTLRNSKSAGYDGLNINI
FT                 VKSCIDSISGPLSTAINNILTSGSFPDSLKIAQVTPIFKKGDRLKIENYRP
FT                 ISILPVLSKIIEKVIYNRIVTFLNKHNIIFENQNGFIKNKSTVTAAAQYIQ
FT                 LLHSIFDEVITAIENKEYVTGIFLDLEKAFDCVNIPILLDKLWNIGVRGIA
FT                 HDLIKSYLTNRKQFVVIRTSSGTYRSTVTDMKYGVPQGSVMGPLLFLIYVN
FT                 DIKYCTQNSKVILYADDTSIVCKHKELDQLEILSNCLTNEIVQYFNESHLS
FT                 VSTAKTAVMDFNPSRQTDFEIQLCIGKDIASKENCVKFLGITIQDTLKWDV
FT                 HVDTLASKLAKNIFAINMLSKHCNDTQVLRTAYHALMSSNISYGIEVWGAT
FT                 TQANLNKILKLQKKAVRIICGAKPKDSCRSLFPKAGILTVVNMYIYKSIML
FT                 IRKLNLNLNSDTHNYNTRNKDKFHLLSHRTALYERNPLYAGQRLANTIPSC
FT                 ITSLPTEKFKVTLKRILITNPHYSLDEYFCFAQNKENFIPDSLTSV"
XX
SQ   Sequence 3522 BP; 1314 A; 642 C; 565 G; 1001 T; 0 other;
     ccaaaccatc actggaacaa caaccccact agaagcaact ccataattga agtacacagt        60
     caacaaaaac tgaactacca gcatcagagg caactgctat gcctcagcac cactgacagc       120
     agcaacagga ccaactgcaa caccaaccca acattatcac cagtaacagc agctaaaaaa       180
     caacctacat tgtaacaaca gctgaacaca gacgagccaa agaccaagaa gatctgcttt       240
     gtgtaaggat tttttatggg ttcagcacaa gaagaaaagc agtgactaat cagcctggag       300
     actcatccaa tacacaggtg ggagctaaat cttcagttac agttcaagaa tcccaatgca       360
     gtttcaggat catccaccaa aacttcggaa gcctaggaaa taaacataat gatttagatg       420
     tcttagcatt tgttaataaa ccagacgttt tagttattac tgagcactgg taccccaaag       480
     ataaaatttc tgttatgcac ccattaatga tgaatctgtg ctcatcttac agtagaatga       540
     acaagtctgg tggaggtgtt gcaatatttg caaaaagtgg tagtaatttt attgtgtcat       600
     agatgtaagt tctttaagtg ttgaaggagt cattgaactg tctgctataa actatagatg       660
     ggaaaggcaa catattatta ttgtcggggt ttacagaccc ccctctgcaa atatagatat       720
     ttttctgact aatctaaatc aattgcttgt agagatagat aataaatact ccggaaaaaa       780
     tggctgcata aacataataa taactggtga catcaatatt gatactctgt ccaataattc       840
     cactacaaaa agattacagc tcttattgca agaattcaat ttaaatttac taatcaagga       900
     accaactaga gaggtaggtg gtacaaggac ctgtctagat aatattatca ctaacatgga       960
     taaatttaca tacaaaacag ctgtactcaa acttgctatt tcagaccatc atgctgtgga      1020
     atttcagtgt gtacctaaca taaacctcca cctggtaaaa tgaaaagata tgaaaccaaa      1080
     agaacaataa atgataagaa cattagaaac cttacccatg tgttacaaag tgcaacatgg      1140
     gctgaaacaa attgttactc ttatgaaaat tttgccagtg atttctttta ctattttgac      1200
     atgacatgcc caacaaaatc agttattgta aataataacg aaaaatgcag aaaagtacct      1260
     ggatagatgc tgaagtgaca caagcaagaa atatgttgac tcttttccaa tgcaaaatgc      1320
     ttgaaaaccg tgagaataca aagctgaaag aggctttcaa taaatatcat gaatattata      1380
     agaacttaat aggagacaaa agaagtaaac atgttgctca catactaaat aatggaaata      1440
     atactgcagc ttgcatttgg aatgttataa atagttttag agctggtaag gataatgtaa      1500
     tcaatgacct agtaataagc tataatggat ctgtaattga atgtcaacag gatattgcaa      1560
     atatctttaa tgaatatttc tcttctgttg ggaaatctat caatgatagg ttgcataaca      1620
     ataaatatgc ctttaagggt aaggcttcat catacagcat atatttcacc ccaacaaaca      1680
     gtaatgaaat tagaaacata gtaaagactt tacgaaattc aaaatctgca ggatatgatg      1740
     ggctaaatat aaacatagta aaatcctgca ttgacagcat atcaggacct ctatccactg      1800
     caattaacaa catcctgaca tcaggaagtt tcccagactc attgaaaata gcacaggtca      1860
     caccaatttt caaaaaaggt gacagattaa aaattgaaaa ctatagacct atctctatct      1920
     tgcctgtcct ctcaaagatc atagaaaaag taatatacaa cagaattgtc acattcttaa      1980
     ataagcataa tataattttt gaaaaccaaa acggcttcat taaaaacaaa tcaactgtaa      2040
     cagctgctgc acagtatatt tgatgaagta ataactgcta tcgagaacaa ggaatatgtg      2100
     acaggcattt tccttgatct tgaaaaggca ttcgactgtg taaatatacc aatactccta      2160
     gacaagttat ggaatattgg tgtcagaggc atagcgcatg atctaattaa atcttatcta      2220
     accaacagaa aacaatttgt agttataagg acatcaagtg gcacatacag atctactgtt      2280
     actgatatga aatatggggt accccagggc tcggtgatgg gaccccttct cttcttgata      2340
     tatgttaatg acataaaata ctgtacccaa aattcaaagg taattctgta tgctgatgac      2400
     acatctattg tgtgcaagca taaggaacta gaccaattag aaatattgtc caactgtctc      2460
     acaaatgaaa ttgttcagta tttcaatgaa agtcatctta gtgtcagcac tgcaaaaaca      2520
     gcagtaatgg atttcaaccc atcaaggcaa acagactttg aaattcagtt gtgcattgga      2580
     aaagatattg cctccaaaga aaattgtgtt aaatttctgg gaataaccat acaagacaca      2640
     cttaaatggg atgttcatgt tgacacactg gcaagcaaac ttgctaaaaa tatatttgca      2700
     ataaatatgc tgagtaaaca ctgcaacgat actcaagtac ttcggactgc ttatcatgca      2760
     ttgatgtcat ccaatattag ctatggaata gaagtgtggg gcgcaacaac acaagccaac      2820
     ctaaacaaaa ttttaaaatt acagaaaaag gctgtaagaa taatttgtgg tgcaaaaccg      2880
     aaagactcat gccgtagtct attccctaaa gctggcatac tgactgttgt taatatgtat      2940
     atttataaat caattatgct gatccgtaaa ttgaacctaa acttgaactc tgatacacac      3000
     aactacaaca ctagaaataa agataagttt catctcttaa gccataggac tgcactttat      3060
     gaaagaaacc cactgtatgc aggacaaaga cttgctaata ctataccaag ctgcataaca      3120
     tcacttccca ctgaaaaatt taaagtcaca cttaaaagaa tattaatcac taacccacat      3180
     tactctctag atgaatattt ctgttttgca cagaataaag aaaattttat tccagattca      3240
     ttaacttcag tctgatgttc cttatatagc taatcaaaat tgagaatata agttttgttg      3300
     caaacattgt actatatacc tcataagtat tccccctata aatattgtgc tatgtatccc      3360
     ttgttttgtt gtaaacattg tactatatac catacctacc tcatagttca taagtattcc      3420
     ccttataaat attatgctat gtatcccttg taaccaactg acgtattcag aaaaatgata      3480
     cttgtatcat ttgatgttga ataaagttta tttatttatt ta                         3522
//
ID   Daphne-58_LMi repbase;    DNA;    INV; 4773 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 20.01, Created)
DT   14-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-58_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4773
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 187-187 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1127..1717
FT                 /product="Daphne-58_LMi_1p"
FT                 /translation="MNYTLISFYCRAAHKGGGVAVYVRDTLVRFTSQICWV
FT                 NNYCVDLDFEIAMVKLTVGKFVLFILGIYRSPNGSFXVFNXXLEXVLNNIY
FT                 ENENAHVCVLGDLNVDTLKENSDRTXFLDLIASYGLTDCLGHIXTRMTHNS
FT                 SSSIDHVITDIDCFEASVINGFVADHFAQLIDFNNLLTHIWFRSVKFKRKF
FT                 TIEMLNF"
FT   CDS           join(1924..2337,2235..3080,3028..3627)
FT                 /product="Daphne-58_LMi_2p"
FT                 /translation="RKYKRYKLLFRKEIKKAKAESIKYKITTSDNVSKSSW
FT                 AFVKNIRXQDSASMKKENVSLIINEEVIXDPHIISEKFNDYFVDLVKNDPI
FT                 VPGQTLHNDVDFSMVDLGMHLKLLLEMLLKPLIHLRINLHQDGTIFLPNSL
FT                 RYALKITTRNVIEAIDTLKNKSSSGWDNFSPKLLKQCKLELAPVLTHLIQL
FT                 VFTSGIFPDLLKFTIVKPIYKKGPRTNVQNFRPISLTSVFSKLIEKFLVLK
FT                 LDDHFTTRGLLADFQHGFRQGRSTISAAVDFVHDALDKLDSGCKVAGLFLD
FT                 LSKAFDRVNHVILLHKLMAYDVPGWILRLIHSFLKNRIQCTEIQFYDGKTL
FT                 RGVQSGKHMVGSGVPQGSHLGPCLYIYYVNAFPSVWNVSTRMYADDTSGLC
FT                 WANSNXELKAVITNFVEVACDFFYRNRQLLQTLSRLHVIFFTEIDFKVNMS
FT                 KTELVNFGIGNHVPAISVVKNTTIFXSNDFCKFLGMFFDKNFVWQKHIDYV
FT                 CSKMLSGTYLLRRLSHYLDSHTLRIVYFGVIYPYMAYGLLLWGGTYQSXIN
FT                 RAFLIQKRAVRLVAKADARSSCRNLFIDYKLLTLYALYAYQVIILVKEDHK
FT                 YTHVNDQIHEYNTRQKHDRFRI"
XX
SQ   Sequence 4773 BP; 1523 A; 708 C; 878 G; 1644 T; 20 other;
     agggtttttg ttgtttatgg tatcattgaa gtgtggaaat ttctgatgaw gagtatgagt        60
     ctatgatatt ttaggcgaaa aatcgagatg gctatgttca cagtgtggaa tgagactaga       120
     tattttagtg aaaaaagttt ttgacattga aagcatttta gaactaatgc tactgtcaac       180
     aagctggcag acttagttaa ggatgtggta aatgataagt aatcctgaaa aagaaacttg       240
     acatggtttc tgaaaattca atgatttagg gaacaaagtg tcacttaatc aggaaaaagc       300
     ggctgtttac cagaacaaaa actctatcaa gaggaagaat tattcggama cagctttcaa       360
     atgctctaat aggcaacaat ckatacagaa acacaaacaa gatgatatca gagtgacaga       420
     gttaggcatc tgaaaasaca acgttctatc aaatactact gaagagtaac tgtcaattca       480
     tactccttaa aaccttctct ctacagttca gttcttgtgc gtgaaaatgc ctctgcaaaa       540
     aatactgtac agattgtaaa aacgacagat gtaacccaag gaaaagtaaa aatacgaaat       600
     tggatgtaat atctcaaaaa gtggcttaaa tcagtagaga aaaggaatgg atttttatct       660
     ctcggtgtga caatgagact acagtggagc aagtacaaag ttatattaaa gatgggggta       720
     ttgtgaattt tagctgtgat cagcttagaa caaaacattc ttcatataac agttttaagg       780
     taagtgtgtc agagaaggat tttactgttt tactcgaaga agacttctgg ccaagtggca       840
     tttttgtgaa ggagtatgaa ctacctagaa acacttttaa gacaaaactt attaggccaa       900
     ctgaaaatag gacacaaact ccttttttag ggagcagcct cctgacgtaa acagctgtaa       960
     tccgaaagaa aagcataaaa ctaacctacg tcttttgcac caaaatgttg aaggtctwgg      1020
     caataagttc gattatgttg aacaatttgt cattgatttc cttcctgact gtttwgtact      1080
     aactgagcat caacgaggtg tgcatgattt awatcttttt aagtttatga attatacttt      1140
     gatttcattt tattgtagag ctgctcataa aggtggcgga gttgctgtct atgtgagaga      1200
     caccctggta agatttacct cacaaatttg ttgggtgaat aattattgtg tagatctgga      1260
     ttttgaaatt gccatggtga agttaacagt tggcaaattt gtacttttta ttctggggat      1320
     atatagatcc ccaaatggtt cmttccmtgt ttttaatgas aasttagaak ctgttttaaa      1380
     taatatttat gaaaatgaaa atgctcatgt atgtgtttta ggtgatctta atgtagacac      1440
     actaaaagag aacagtgata ggacamaatt tttggaccta attgcatctt acgggttaac      1500
     tgactgtcta ggccatatam caaccagaat gacacataat agctcmtcat ccattgacca      1560
     tgtaattact gatatagatt gttttgaggc ttctgtgata aatggttttg tagctgatca      1620
     ctttgcacag ttaatagatt tcaataatct actgacacat atctggttca gatcagtgaa      1680
     atttaaaaga aaattcacga tagaaatgtt gaacttttga agcataattt agccactgaa      1740
     aattgggacc ttgttttttc tagtgaaggg gtgaacaacc aatatcaggc cggatattca      1800
     atgactgaat cagcctgata gtaaaattgg aaaggtctca ttggatgctc atgcacttga      1860
     actacattca gaaatgctta gcatgtatga tctttttgta tatactggta atgaattgta      1920
     taaagaaagt acaagagata taaattacta tttcgtaagg agattaaaaa agctaaagct      1980
     gaaagtataa aatataagat tacaacatct gacaatgtgt ctaagagttc ttgggcattt      2040
     gttaagaata ttagagstca agatagtgca agtatgaaaa aagaaaatgt atctttaata      2100
     ataaatgaag aggtcattsa tgaccctcat attatcagtg aaaaatttaa tgactatttt      2160
     gttgacttgg taaaaaatga cccaatcgta ccaggacaaa ctttacataa tgatgtagac      2220
     tttagtatgg ttgacttagg tatgcactta aaattactac tagaaatgtt attgaagcca      2280
     ttgatacact taagaataaa tcttcatcag gatgggacaa tttttctccc aaactcttaa      2340
     agcaatgtaa attagaattg gctcccgttc taacccatct tatccagttg gtctttacaa      2400
     gtggtatatt cccagatctc cttaaattta ctattgtgaa acctatctat aaaaagggac      2460
     ccagaaccaa tgttcaaaat tttagaccga tatcacttac atccgttttt agtaaattaa      2520
     tagagaaatt tcttgtcctt aaacttgatg atcattttac cactagagga cttttggctg      2580
     atttccaaca tggctttcga caaggcagga gcacaatatc tgctgctgtg gattttgtac      2640
     atgatgctct ggacaagctc gattctggtt gtaaggtggc aggtctgttt cttgatttat      2700
     ctaaggcctt tgaccgtgtt aaccatgtaa ttcttttgca caaactaatg gcatatgatg      2760
     tacctggatg gatattaaga cttattcatt cctttctaaa aaatagaatc cagtgcacag      2820
     aaattcaatt ttacgatgga aagactttga ggggggtgca atcgggtaaa catatggttg      2880
     gttctggagt tcctcaaggt tcccatcttg gtccctgtct ctatatttat tatgttaatg      2940
     cattcccatc tgtttggaat gtttccacca gaatgtatgc agatgacact tcagggctgt      3000
     gttgggcaaa tagtaaccwa gaattaaagg cagttattac aaactttgtc gaggttgcat      3060
     gtgatttttt ttacagaaat tgatttcaaa gttaacatga gcaaaactga gttggtgaat      3120
     tttggcatag gaaaccatgt tcctgctata tctgttgtaa agaatactac aatttttkaa      3180
     agtaatgact tttgtaaatt tttaggtatg ttttttgata aaaactttgt atggcagaag      3240
     catattgatt atgtgtgctc caagatgtta agtggcactt atctgttaag acgtctttca      3300
     cattatctgg actcgcacac tttaaggatt gtttattttg gagttattta cccctacatg      3360
     gcatatggct tattactgtg gggaggtacc taccaaagct amataaacag agctttcttg      3420
     atacagaaaa gagcagtcag acttgtggcc aaggcggatg caagatcatc ttgtagaaac      3480
     ttatttattg actataagct gctcacttta tatgcactat atgcttacca ggttatcata      3540
     ctggtaaaag aggaccacaa atatacacat gtgaatgatc aaatacatga atataacaca      3600
     agacaaaagc atgatcgttt tagaatatga agaaactttt ccagaactga aaatagccca      3660
     tatgtgaaag gagttatcct ttataataaa ttacctagct acttgaagga actagaagga      3720
     tctaaattta aaagtaaact caagaactgg cttatatcta aatgccctta cagtctagat      3780
     gacctccaat aacttgtaca tcaaagatta ttgcatgtat tgttttgttg tatggtatga      3840
     atattttata ctatatgtat ataagtgtgt gtgtgtgtgt gtgtatgttg tgtgtgtgtg      3900
     tgtgtacaat ttttgccata tattattgtg tatgttattt tgtttccttt ttaaatcaga      3960
     cacaatgtat gtaggcaaac ttagtatgta attttatttt gcttgtcttc tctctagtac      4020
     tgttttaagg cttggcatga gatatcacca catttttagc tttcatttat acaccgagac      4080
     gcatgtcact tcattttata ttcgactgta ttctttttat ttagtaaatt taagaactgg      4140
     gttaatcaaa atgcctttac agtctagatg accaccaata acttgtcatc aaagactcct      4200
     gtatgtattg ttttgttgta tggtataact atttaatact atatgtatat aagtgtgtga      4260
     gtgtatgtgt atatattttg ccatagatta ttgtgtatgt accttgacct cttttaaatc      4320
     agacacaatg tatgtaggca aatttagtat gtaattttat tttgcttgtc ttctttctag      4380
     tactgtttta aggcttggca tgatatatca cagcattttt agctatcatt tttacactgg      4440
     ggtgcatgtt acctcatttt tatagtggac tgcattctct tttctatctg atttttttac      4500
     atgtaatgtt ttaaggtatg tctatacctc aaatagcttt taatctttta ctcttgatct      4560
     tggaatgatt tttagctgta ttatatctat ttctaatttc tgctttttta tgatctaaca      4620
     ttatatgtaa tcctgcatgt tttgttttac tgcatggcat gattttctat tttactttat      4680
     ttaccttacc tcaatccatt gtgacaaata tatggaaaat atgacatatt gtaatgcatg      4740
     gaacacatgt tttatacaat aaagttaaag tta                                   4773
//
ID   Daphne-59_LMi repbase;    DNA;    INV; 2627 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-59_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2627
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 188-188 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(678..1229,1216..2352,2328..2501)
FT                 /product="Daphne-59_LMi_1p"
FT                 /translation="KTCLLETYKELFARAKFTYRQAINEAKKMHNIANIEK
FT                 SKNKCKKAWNIINSVAHSKQRDEIAITPEEFNKFCIQSVEEISSTVNKPSQ
FT                 NAVSIMVNCFDKTPQSTFTFTEVCPDTILKIVKXXKNSTSVDYYDLSCNLL
FT                 KDAIDCXICPLTYCVNKCLVESKFPDVLKYLEXFPFIKRVNETVPTKLSPS
FT                 YRPISITPVFSKNFETIMYDQVSTYLEKSNIVSDNQFGFRKGKSTTNAMDS
FT                 LVQFVLDVFEARGYAQATFCDLSRAFDCVQHDTLLKKLVFYGFDCNSINMF
FT                 KSFLENRQQVVCIGSEKSNLTFVRSGVPQGSVLGPLLFLLMINDLPLFINS
FT                 HTILYADDTSFLNKSSDLSTLKTLTKDTLDQASLWFRANGFLLNESKTQKL
FT                 YFSLKEIPDHHELETVKFLGVLIDNKLNWEPHITNICVRLSRVIYLIRNLK
FT                 KHVPNNYIRAAYFAFFQSIITYGILLWGSSSHAHDILLLQKKVVRIISNAN
FT                 KTEHCKPLFVKLQCLTVVNLYIYNVLLYTKNNASNLVLRSDVYSYFTRNRT
FT                 CADVPYHRLLNHRTLIITKSQNSYIVLGLKMFNKLRADFKELPLNIFKSKL
FT                 YKLLLNNPYYSVGEFFEDEINYL"
XX
SQ   Sequence 2627 BP; 896 A; 430 C; 461 G; 836 T; 4 other;
     gatctcaaca ccttttgtga tgaagtgcat tttgaaatat caggtctaga attgagatct        60
     taaactagta gtgtatagga cgcttagtgg tgatccccac atcttcctcg aaaaacttga       120
     tgatgtctta atgtatttct gtacaccaaa atggcaaaaa ttagtattgt cactgggggg       180
     ggtgccagtt ctacttttga tgtcctgcag aacaaaagat gtgcggaact aaaaaatgtg       240
     cttagacaat ttaacttgaa ctgtgttaac agtaaaccta caggggctct gcacgccttg       300
     actatttaca aatattgaga gaacttgtat gtctctggtg tattgtttcc ctttctcgat       360
     catgagcagt atattagtac cagaaagcag cctcagactg tcttgcacca aaatataaaa       420
     ttgtgaccac cagacctatg agcgaagaga agttagacag cttcagacat gtggccctca       480
     cctgctttgg ttggactacc tatttagtag gcttcaaaat tgttcctctg gtattgtttt       540
     cactgcgttt ttttctgtat tcttaaatat gtttgaagta atatcccttt gaaaaagtgc       600
     actgtgaaca ttagtagtaa ttgtaaaaag aaaaaagaaa agcaaggatt ggtatactcc       660
     acatttaagg caattgaaaa acatgcctgc tcgaaacgta taaagaatta tttgctagag       720
     ctaagtttac atataggcag gcaatcaatg aagccaagaa aatgcataat atagcaaata       780
     ttgaaaagtc caaaaacaaa tgtaaaaaag cttggaatat aatcaactct gttgcacaca       840
     gtaaacaaag agatgaaatt gccataaccc cagaagaatt caataaattt tgcatacaat       900
     cagttgaaga aattagtagc acagttaaca aaccctcaca aaatgctgtt agtatcatgg       960
     ttaactgctt tgataagact ccccagagca cattcacttt cacagaagtg tgtccagata      1020
     ctatactgaa aatagtgaaa matttmaaaa attcaaccag tgttgactat tatgatctgt      1080
     cttgtaactt gttgaaagat gctattgatt gtgwaatttg tcctttaact tattgtgtaa      1140
     acaaatgtct tgtagaaagt aagttcccag atgtgttaaa atatctagag ttkttcccat      1200
     ttataaaaag ggtgaacgaa actgtcccct agttataggc ctatatcgat aacccctgtt      1260
     ttttcaaaaa attttgaaac aattatgtat gatcaagtaa gtacttactt ggagaaatct      1320
     aatatagtta gtgataatca gtttggattc aggaaaggta aatccacaac caatgcaatg      1380
     gattccctag tacaatttgt ccttgatgtg ttcgaagcta ggggctatgc tcaggctaca      1440
     ttctgtgacc tgagcagagc ttttgactgt gtacagcatg acactctgtt aaagaagctt      1500
     gtcttttacg gttttgattg caacagcatt aacatgttta aatcttttct agaaaacaga      1560
     caacaagttg tgtgcattgg cagtgagaaa tcaaatttga cttttgttag gtctggggtg      1620
     ccacaagggt cggtgctcgg gccgctactg tttttattaa tgatcaatga cctgccacta      1680
     ttcataaatt ctcacacaat attgtatgct gatgatacta gttttttaaa taaaagctca      1740
     gatctaagca cgctaaaaac attaacgaaa gatacccttg accaagcctc attatggttc      1800
     agagcaaatg gtttcctgtt aaacgaaagt aaaacccaga aactttactt tagccttaaa      1860
     gagatacctg atcatcatga attggaaact gtcaaatttt taggtgtact tattgataac      1920
     aaactgaact gggaaccaca cattacaaat atatgtgtga ggctttcaag ggttatttat      1980
     ttaatcagaa atctaaagaa acatgttcca aataactaca taagagcagc atattttgct      2040
     ttctttcaaa gcattataac atatggaatt ttactgtggg gcagcagcag tcatgcacac      2100
     gacattttac tgttgcaaaa gaaagtagtt agaataataa gtaatgccaa caaaacagaa      2160
     cattgtaaac ctctttttgt taaattgcaa tgcctgactg ttgtaaattt atacatttat      2220
     aatgtcttat tgtatactaa aaacaatgct tctaatcttg tactgagaag tgatgtgtat      2280
     agttatttta ctagaaatag aacatgtgca gatgttccat atcatagatt actaaatcac      2340
     agaactctta tatagtcctt ggactaaaaa tgtttaataa gctgagagca gattttaaag      2400
     aattacctct aaatatattc aaatctaaac tgtataaatt attattaaac aatccttact      2460
     actctgttgg agaatttttt gaagatgaaa ttaactatct gtaagatgtg gtttgtaatt      2520
     tacctacttg ttaaatctga acaacattgg taaataataa gtatcttcct gacgttgtct      2580
     attgctgtaa gagccgaatg acaataaaat tatattatta ttattat                    2627
//
ID   Daphne-5_LMi repbase;    DNA;    INV; 3963 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.11, Created)
DT   03-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3963
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3119-3119 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1224..3734
FT                 /product="Daphne-5_LMi_2p"
FT                 /translation="SPSGNLXIFFXKLTQSLELALTLKHNILLCGDFNINT
FT                 AETDDTSNTFLNILHSFGMSSLVNSPTRITAHSSSIIDHVATDIAREXCEV
FT                 LVKNGLTDHQCQIIKVKARVKKEPKLHVYKRVYSPSALQKFSLQLAHKRWE
FT                 GVYAETEVNKKFSNFMSEFKLKFEETFPKTLVPIGTFTKNKWITKGIKKSA
FT                 QTLKYLNSIKKDNSDPDFLNYYNNYKRIYRKVLKTAKISANDKFIKLANNK
FT                 SKATWTVVKQETGNMKQWCANTKIKNKENLASNPKELANYVNTYFSSIATK
FT                 LQNNFPKHVNQPRQLHVTNSMVVFPTTEEEVCNVVKQLKNKNSAGMDEIPM
FT                 CVLKKCINNIKAPLAEIINESFKTGCFPDYLKHAKILPAYKKGDVENIENY
FT                 RPIALLSSFSKVIETIMKNRLMSYLSKFNLLCNDQYGFRPGRGTESAIAQF
FT                 TKTVLEALDENSYVTGLFLDLSKAFDTVDHQILLYKLEALGIRGVANKWFG
FT                 SYLKNRVQSVEITHVSSGSKYIEKHISDPQHINIGVPQGSILGPILFLVYI
FT                 NDFPQHITHGEKILFADDSNILITSKTQTQMLEKSTEVLRDVYKWSQKNKV
FT                 TLNIKKTNTICFRINRKMSPLNLALDNISIEDVHSTKFLGLFIDSQMKWNE
FT                 HAIKLSNKLSTTCYALRVLASTCSDKCLRTVYFSYVHSAISYGIIFWGTSA
FT                 QNLQTVFKMQKRAIRIITKSSKWAHCRELFKMLEILTVPCEFIFQTIVYIK
FT                 KNIENYSTNSKFHNYNTKTSHHLHLDRRNKQKTQNSFLYEGLKLYNKLPQK
FT                 IKEIDKMYCFRKQLKLYLQEHCFYTVSEYLSNKSL"
FT   CDS           join(488..841,822..1220)
FT                 /product="Daphne-5_LMi_1p"
FT                 /translation="MHGKKLIGTKINEIAKRMCINNIMPIIIPSHEEEAIS
FT                 SQVIAPTKIAAEEQTQPVTVIPNVAAQTTARDEMPXTTSMPSAVIPXVTDA
FT                 AEDMETTISGAASKRKRIPPSHLMDFLLQVWIFYCRYDKKETTKINNNKYL
FT                 TILHQNMQSVKNKVQQLEVELQFSDSSVICITEHWCNQNEIVHINLPSHVQ
FT                 ACSYCRNNMKGGGSCIYIKNGIEFKVRNDIISLSVDKDYEVSAIEIATIDM
FT                 PKKLTILCVY"
XX
SQ   Sequence 3963 BP; 1572 A; 709 C; 684 G; 989 T; 9 other;
     tgaggaacaa tttaacgata cagattgcca tcaaacagac gcagctgata cacgaaaatg        60
     taagaaatcc aagttagtag ctgcgatctg caaaaatctt gcaaaatgaa catgatctca       120
     gagctactgg ctacgtaaaa cctggggccc ctatccgtga agttgtaagg aatttacaga       180
     gtggaaagat acacaagaaa gtcgggtttt ggttataatt ggtggtgcaa acgatgtcta       240
     ttgcaatgaa ctaaaaagtg ccatmtgtga cttgaggaaa gccctggaca cagtaaaaaa       300
     tgaaagtgta atagtgactg gaataccgca cagatttgac ctaatagaaa cgtcatgtgt       360
     aaaccaggaa atcactaagg ccaacagaca atttcgtaaa ctatgtaaag catacasgga       420
     cacacacttc ctagatgtgc aattcctgga aaggaaacac ttcactaggc atggtttgca       480
     cttaaatatg catgggaaaa aactgatagg tactaaaata aatgaaatag ctaaaaggat       540
     gtgcataaac aacatcatgc ctattattat accatcacat gaggaagaag ccatctcatc       600
     acaggtgata gcaccaacaa aaatagcagc tgaagaacaa acacaaccag taacagtgat       660
     accgaatgta gcagcacaaa caacagccag agatgaaatg ccacmaacta catcaatgcc       720
     atcagcagta atcccakcag taacagatgc agcagaagat atggaaacaa ccatcagtgg       780
     ggcagcaagt aaacggaaaa gaatacctcc ttcccatctg atggattttt tactgcaggt       840
     atgacaaaaa ggaaaccacc aagataaata acaataaata tctaacaatt ctccaccaaa       900
     atatgcagag tgtaaaaaac aaagttcaac agctagaagt agagttacag ttctcagaca       960
     gctcggttat ctgcattaca gagcactggt gtaatcaaaa tgaaattgta cacattaact      1020
     taccctcaca tgtccaagca tgttcctact gcagaaacaa tatgaaaggt ggaggatcwt      1080
     gtatttatat taaaaatggt attgaattta aagtaagaaa tgatataatc tcgttaagtg      1140
     tagacaaaga ctatgaagtg tcagcaatag agatagckac tatagatatg cccaagaaac      1200
     taactatatt atgtgtatac tgatctccta gtggtaattt agasatattc tttkcaaaac      1260
     ttacacaaag cctagaacta gcattgactc tgaaacataa tatccttttg tgtggagact      1320
     ttaatataaa tacagctgaa actgatgaca ccagtaacac ctttctgaat atcctacata      1380
     gttttggcat gtcatcacta gtcaacagtc caacaagaat aactgctcat tcatcttcca      1440
     tcattgacca tgtagctaca gatatagcca gagaagwctg tgaagtactt gtcaaaaatg      1500
     gactgacaga ccaccaatgc cagatcataa aagttaaagc tcgtgtaaag aaagaaccca      1560
     aactacatgt atataaaaga gtctactccc catcagccct acaaaaattt tccttgcagt      1620
     tagcacataa acgttgggaa ggagtttatg cagaaactga agtgaacaaa aaattctcaa      1680
     acttcatgtc tgagtttaaa ctaaaatttg aagaaacatt ccccaaaaca ttagtcccta      1740
     taggaacatt tactaaaaat aaatggatta ctaaaggaat taaaaaatct gctcaaacct      1800
     taaaatacct aaattccatt aaaaaggaca acagtgatcc agatttcttg aactactata      1860
     ataattacaa aaggatctac agaaaagtac tcaagacagc aaaaatttca gctaatgata      1920
     agttcataaa attagcaaat aataaaagta aagctacttg gactgtagtg aaacaagaaa      1980
     caggaaatat gaaacagtgg tgtgcaaaca caaaaatcaa gaacaaggaa aacttagcaa      2040
     gtaacccaaa agaattagca aattatgtga atacctactt cagcagcatt gcaacaaaat      2100
     tgcaaaacaa ttttccaaaa cacgtaaatc aaccaagaca gctgcatgta actaactcaa      2160
     tggtagtgtt tccaactacc gaggaggagg tatgcaatgt tgtaaaacaa ttaaagaaca      2220
     aaaactcagc aggtatggac gaaattccaa tgtgtgtgct gaaaaaatgc ataaataaca      2280
     tcaaagctcc actggcagaa atcataaatg aatccttcaa aactggttgc tttcctgact      2340
     acctgaagca tgcaaaaatt ttaccagctt acaagaaagg tgatgtagaa aacattgaga      2400
     actacagacc aatagcccta ctgtcatcct tctctaaagt gatagagaca ataatgaaga      2460
     atagactcat gagctaccta agtaaattca acctcctctg caatgaccaa tatggtttca      2520
     ggcccggcag aggcacagaa tccgcaatag cacagttcac aaaaacagtc ttagaagcac      2580
     tagatgagaa cagctatgta actggccttt ttctagacct ttctaaggca tttgatactg      2640
     ttgatcacca gatattgtta tataagttag aggcactagg aataagggga gtggcaaaca      2700
     aatggtttgg ttcatatcta aaaaacagag tacagtcagt agagatcact catgtctcca      2760
     gtggatcaaa gtacattgag aaacacatat cggatccaca gcatatcaat attggggtcc      2820
     cccaaggaag catactgggc ccgatattgt ttctggtgta tataaacgac ttcccacaac      2880
     atatcaccca tggagagaag atattgttcg ctgatgacag caacatatta atcaccagca      2940
     agacacaaac acaaatgctg gaaaaatcta ctgaagtgct gagagatgtt tacaaatggt      3000
     cacagaaaaa taaagtaacc ctcaacatta agaaaacaaa tacaatttgc tttagaataa      3060
     ataggaaaat gagtccatta aatttagctc tagataacat ctccatagag gatgtacatt      3120
     caacaaaatt tttagggttg ttcattgata gccaaatgaa gtggaacgaa catgccataa      3180
     aactctcgaa taagttatcc acaacatgtt atgctcttag agtccttgca tccacatgca      3240
     gtgataaatg cctgagaact gtctatttta gttatgtcca ttcagcaatc agttatggaa      3300
     taattttctg gggaaccagt gctcagaact tgcaaactgt atttaaaatg caaaagagag      3360
     caattagaat tataacaaaa agcagtaagt gggcccactg cagagagctt ttcaaaatgt      3420
     tagaaatttt aactgttcct tgtgaattta tattccaaac catagtgtat ataaagaaaa      3480
     atatagaaaa ttatagtaca aatagcaaat tccataacta taacacaaaa acaagtcacc      3540
     accttcacct agacagaaga aataaacaga agactcaaaa cagtttcttg tatgaaggtc      3600
     taaaactgta taataaactg ccacaaaaaa taaaagaaat tgataaaatg tattgcttta      3660
     ggaaacagct taaactgtat ttgcaggaac actgttttta caccgtaagt gaatacctta      3720
     gtaataaaag tttgtaaata gtttgtctta caatgttggg tatatgtaat attttataag      3780
     gagaaaaatg attgtaaaca acatatgtct cacaatgtta aactagatgt aacaaaaaaa      3840
     cctgttgtga atgtaaatga actagagata agaaaaactg tataaatatg taaatgtaaa      3900
     tgaactgaca acatccatac attttaaaat gtctgtggat ggctaaaata aataaataaa      3960
     taa                                                                    3963
//
ID   Daphne-60_LMi repbase;    DNA;    INV; 4183 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 20.01, Created)
DT   27-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-60_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4183
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 189-189 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(484..948,991..1536,1484..3844)
FT                 /product="Daphne-60_LMi_1p"
FT                 /translation="MDSTAPCKKVLAKEILQAIKTASVDTFEKLALPAIGL
FT                 LPMANEKENVPTVHKEETTMATPPEETCPQPTPTSASEALSPVETPEPSVQ
FT                 EESGGARASQAIPGVSQETVTASTPKGGKRSTADEAVSSVVSKRKTVPPLR
FT                 LNDFLVECRKIKKPTKICIPLLHKKKYVEMTSRISYPDESEADSLVPPCKE
FT                 KKLIFLHTNVQSLKNKLFELQYWLEKLNCSILMINEHWLSCGELELSVPNG
FT                 YELATGYCRXNKAHGGVSIYINKMLQLNYETLDVNEFCIESHFEVAAVLLT
FT                 ELEIIAVSVYRPPNHSEDLFIENLQKLIVSLLKKKKSQSSNFWRHLSHSSR
FT                 KKNHRVLIFGDINIDIRYRSSTVTNLLDTLRSLNFYCINDKPTRKNACLDN
FT                 IICNFHIGRDQFNTIKLAISDHDGLWLRLPLSHKTDTSQQRIIRPINEQKL
FT                 NTLKSKLTLVNWNELLTRDMGANESTKRFLEVVTKIFEETCPAYYKKHSKN
FT                 RSQSKPGTLKQWYTAELNNLRILMLMYYDRSQHSNIDRLRYKNIKKYYRSA
FT                 IKEAKCKSNDDYILNSVNKCKAAWEVIKTEINHQKKDQNIPISPDTLNKYF
FT                 ANPLMENNTEEDVNKAEELLPQLHNKAMGHFEWNHVTCRQVSVAISKLSNS
FT                 RTEDHYGLSNFIIKQISQEILTPITNIINKILTEGVYPDSLKISVIKPVHK
FT                 KGSTLSPDNYRPISLVPIISKITEYCMHQQLNNYFEHNNLICSEQFGFRPT
FT                 LSTVKAVDNIITKVYDCFEKKTLSCATLLDLRKAFDMVSHNILIRKLQYYG
FT                 IGENALRLLQLVNVNNKKSDPLPVKKGVPQGSVLSPFLFIVYINDLPSILP
FT                 CEAVLYADDTTLIAQNSDMDELLLNVAVAIENCNNWFQANXLHINSSKTEN
FT                 IIFDLNAHKHENKSVKLLGFHIDQSLSWETHTDKLCSKLARVIYLLHRLRG
FT                 CVSKTLLLYAYFAFFSSHLTYGILLWGNSPGSKAVFKWQKKAIRCVAGLAP
FT                 QESCRHFFKEMKIMTVPSLYIYSCLVYVKENLHKYDLRMSVHNHNTRHRHA
FT                 IDKPHVRLAKVHSSYKYLGPTFFNKLPNEAHSVPLNKFKNIISKWLKSKAF
FT                 YTIKEFEESTIDDLEF"
XX
SQ   Sequence 4183 BP; 1572 A; 736 C; 724 G; 1147 T; 4 other;
     tcaaaataaa aatagtgtaa agataacaga caataaggaa ctcaaggcga aaactgaagc        60
     agtgatgacg aaagaagaaa ttttcatatt gtcaacaagt catggtaagg gttagcaaaa       120
     ataatgtcga tatccaatca gaatatagtc agtggaatct caaaacctgg agctcgttgc       180
     gagaggtact gaaaaacagt gaaactactg taaaaagtgg agtgactgtg tagtaattgg       240
     tggtggtaat gatgtgtata gaaatgagag cagccttgcc gtgaaagcac gagagaatca       300
     ctaggaaaat tgtcacaagc gaaggtattt ttggtaagca ttcctcatag acatgaccgg       360
     agacgattca tgtgtaaata aagaaatcgt cacaacaaac aggaaattca ggaagatctg       420
     cagcagtttt gtgcacacta cctttattga ggctactagc tctatcagag aacattttag       480
     agaatggact ccacagcacc ttgtaagaaa gtgctggcaa aagaaatttt gcaagcaata       540
     aaaaccgcta gtgtagacac atttgaaaaa cttgcactac ctgcaattgg cttgctgcca       600
     atggcaaatg aaaaggagaa tgtaccaact gtacataagg aagaaactac tatggctact       660
     cctcctgaag aaacttgtcc tcagcctaca ccaacatcag cttctgaagc actgtcacca       720
     gtggaaacac cagaaccttc agtacaagaa gaatcaggtg gagcacgagc atcacaagcc       780
     atacctggag tttcacaaga aacagtaact gcatcaacac caaaaggagg gaagagaagt       840
     acagctgatg aagcagtaag tagtgtagta agcaagcgga aaacagtgcc tcctctccgt       900
     ctcaatgatt ttttagtgga atgccgcaag atcaagaagc ccacgaaata agcagagtaa       960
     ctccaacaaa tgaaaaggta acttctgtaa atatgcattc ctctgttgca caaaaaaaag      1020
     tatgtagaaa tgacaagtag aatttcttat cctgatgaat cagaagcaga ctcattagta      1080
     ccaccctgca aagaaaaaaa actaattttc ctccatacaa atgttcaatc cttaaaaaat      1140
     aaactttttg aactccaata ctggctagaa aagttaaact gtagtattct tatgataaat      1200
     gaacattggc tgtcatgtgg agagttagaa ttaagtgtac caaatggtta tgaattagct      1260
     acaggttact gtagawcaaa taaggcacat ggtggtgtst ctatctacat taataaaatg      1320
     cttcaactaa attatgaaac tttggatgta aatgaatttt gtatagaatc tcattttgag      1380
     gttgcagcag ttctgctgac agaattggaa attatagcag tatctgtata tcgtcctccc      1440
     aatcacagtg aagatttatt tatagaaaat cttcagaaac taattgtctc actcctcaag      1500
     aaaaaaaaat cacagagttc taatttttgg agacattaat atagacatta ggtatagaag      1560
     tagtacagta actaatttac ttgatacatt aagatcatta aatttttatt gtataaatga      1620
     caaacccaca agaaagaatg cttgtctgga taacattatc tgtaattttc atataggtag      1680
     agaccaattt aacacaataa aactagcaat ctctgaccat gatgggctgt ggcttagact      1740
     tcctctgagc cacaaaactg acacgtctca gcaaagaata atcagaccta taaatgaaca      1800
     gaaattaaac accctaaaat caaaattaac attagtaaac tggaatgaat tactcacacg      1860
     agatatggga gctaatgaat caactaaacg atttttggaa gtggtaacta aaatctttga      1920
     agaaacatgc cctgcatact ataaaaaaca ctcaaagaat agatctcaat ctaaaccagg      1980
     gaccttaaaa caatggtaca cagcagaact aaataactta agaatattga tgctcatgta      2040
     ttatgataga tcacaacaca gcaacataga caggcttaga tataagaaca ttaaaaagta      2100
     ctacagatct gcaattaaag aagcaaaatg caagtccaat gatgactaca tccttaactc      2160
     tgtaaataaa tgtaaagcag catgggaagt cataaaaact gaaataaacc accaaaagaa      2220
     agatcagaac ataccaattt ctcctgacac actaaataaa tactttgcca atcctttaat      2280
     ggaaaacaac actgaggaag atgtgaacaa ggcagaagaa ctactgccac aattacacaa      2340
     taaagcgatg ggacattttg aatggaatca tgtaacttgc cgacaagtta gtgtagcaat      2400
     aagtaaactc agcaactccc gaactgaaga ccactatggt ctttccaatt ttattattaa      2460
     acaaataagt caagagattt taacacccat aacaaacata ataaacaaaa tattaacaga      2520
     gggagtctat cccgacagcc tgaaaatatc cgtaataaag ccggtccata agaaaggtag      2580
     cactttatca cctgacaact ataggcctat ttcacttgta ccaataatct ctaaaataac      2640
     agagtactgt atgcaccagc agttgaacaa ttattttgaa cataataatt taatctgctc      2700
     tgaacaattt ggctttagac ctaccctatc cactgtgaaa gcagttgata atatcataac      2760
     taaagtatat gactgctttg agaaaaagac attaagttgt gccacactac tggacttaag      2820
     gaaagccttt gacatggttt cccacaatat cctgatacga aagctgcagt actatgggat      2880
     tggggagaat gccctccgcc tactacagtt agtgaatgta aataataaaa aatcagatcc      2940
     tttacctgtt aaaaaaggag tgccccaggg ttctgttctt agtccctttc ttttcattgt      3000
     atacattaat gatttgcctt ccatattacc ctgtgaggct gtactatatg ctgacgacac      3060
     tacattaatt gctcaaaatt cagatatgga tgaactacta ctgaatgtag ctgtggcaat      3120
     agaaaattgt aacaactggt ttcaggctaa tkcactacac ataaacagca gcaaaacaga      3180
     aaatattata tttgacctaa atgctcataa acatgaaaat aaatcagtaa aacttcttgg      3240
     tttccatatt gatcaaagtt taagctggga gacacataca gataagttat gttcgaaact      3300
     cgcacgtgtg atctatctgt tgcatagatt gagaggttgt gtaagcaaaa ctttactgct      3360
     gtatgcatac tttgctttct tcagttctca tcttacatat ggaattttac tatggggaaa      3420
     ctcgcctggt tctaaggctg tatttaaatg gcaaaaaaag gccatcagat gtgtagcagg      3480
     actggcacca caggaatcat gcagacattt cttcaaagaa atgaaaatca tgacagtacc      3540
     cagtttatac atttatagct gcttagtata tgttaaagaa aacctccata agtatgatct      3600
     taggatgtca gtacacaatc ataacacaag acacagacat gcaattgata agccacatgt      3660
     cagacttgca aaggtccaca gtagctacaa gtatcttgga cccacatttt ttaataaact      3720
     gcctaatgaa gctcactcag tgcctctaaa taaatttaaa aatataatat caaaatggct      3780
     aaaaagtaaa gctttctata ccattaagga atttgaagaa tctacaatag atgacttaga      3840
     gttttgatat agacgtacac agaattttaa attgtaacat taccattgtg atatattgag      3900
     tcactgttct atattgtact gtacaacaat gagatagagg actttgacca ttsatgtaga      3960
     tgtatacaga attttaattg tattttttct aacaaattta ctattgttac tacttttcat      4020
     tgtactgtat tgtattagga aaatttaaaa ctaagtatat gataattgta cctatgataa      4080
     acactgcaaa ttactagctg tttagatatg tatttaaatg tatatgacga caccaattac      4140
     atgtaaacat gtttaaaggt gaataaaata ttctattcta ttc                        4183
//
ID   Daphne-61_LMi repbase;    DNA;    INV; 3132 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 20.01, Created)
DT   03-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-61_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3132
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 190-190 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(190..840,809..934,909..1010,1003..1107,
FT                 1180..1629,1598..2224,2197..2718,2709..2876)
FT                 /product="Daphne-61_LMi_1p"
FT                 /translation="DKPPLPCNNSIVFWHVNIQSLKNKIHDLSILIGESKN
FT                 SVLSINEHWLNDHQLQLYVPSEYCLVSGFCRSSNGYGGSSIYISNDLLTNC
FT                 TKLDISKFCIESVFEASAILLLGPKLIVISVYRTPDSSVDVFTEVLDRTIT
FT                 HLQKYNQHKILIFGDINIDIRITTAKHTHFLNVLRSHNMYCANDKPTRQQS
FT                 CLDNVITNVEKNKFEIGLFNTSLFIRPGFLILLYLSDHEDVARTPTESHRT
FT                 CEPDTLELLKTHIYFQVHRLTYTFRYIKRDLSQFTLLMRLLIALSNVFLTF
FT                 YPFTEYCPKVLKRDKVKANKAIIEVYISGLHLNSKNRTVRDNKTETNGNDN
FT                 YIQHAENKCKAAWRVVKSELGNNINRNSCDTANITPDQMNQFFISSGNKGQ
FT                 SFQQNNCYKXGINKHLEQTKLLTPHNIHETTTFKWAQVAVTDIAVAITKLS
FT                 SSKSEDFYGLSXFVIKMTSDILAYHLYISKLDLPTTYILVNWIFESFSFPA
FT                 SLKKTVVVPLHKRRSKLCVDNYRPISLIPIFSKIIEHCMFQQICKHFTNYG
FT                 ILTSAQYGFRENSSTLKAIEDVVSTILSAFEAKSSADALLVDLSKAFDSVN
FT                 HQILTDKLKCYGIRDPEITLIESYLCDRKQKVQFNGISSSFLNISRGVPQG
FT                 SVLGPLLFIIYVNDLPSNMLCKSVLYADDTTFIVTGMIHHFHCNWNDIENL
FT                 KKQSKANLQTAITWFNDNELTVNQNKTENVIFSLSNNNKSVKLLGVHLDTK
FT                 LTWNIHTDSICNKLSRVIYLLHKLRTCVSANMLLSSYYAFFHSHITYCILX
FT                 WGNSAGAKTVFMWQKKAIRCVAGVFRNNVSCRPLFKELGVMTVPSLFILNC
FT                 LVFTKENRREQVTYKLRQSLHXHNTRHKEKIDQPFTRLSKTQNSYTYLGIK
FT                 XFNACHQKHTLHH"
XX
SQ   Sequence 3132 BP; 1111 A; 573 C; 535 G; 907 T; 6 other;
     actcgccatg gcttacattt aaatgggctg ggtaaagatc tagtcactaa aaagtgcttt        60
     gtatattaag aaacaaactc acgcacaact acaagaaaat aatgctcggg tgggatcaga       120
     aatctttttt agattaagtt tggagactga tgatgttgac atagtacaaa gtgaattgcc       180
     ttcaaatagg acaaaccccc cctaccttgt aataactcta ttgtattctg gcatgtcaat       240
     atccaatcat taaaaaacaa gatacatgat cttagtattc taataggaga aagtaaaaat       300
     tctgtactaa gtattaatga gcactggcta aatgatcatc aacttcaact gtatgtgcca       360
     tcagaatatt gtttagtatc aggtttttgt agaagttcaa atggttatgg aggatcttca       420
     atatacatca gcaatgatct tttgacaaac tgcacaaaac ttgacattag caaattttgc       480
     attgaaagtg tatttgaggc atctgctata ctattgctgg gccccaaact aattgtaata       540
     tctgtatacc gtacccctga tagcagtgtt gatgttttta ctgaagtatt agacagaaca       600
     atcacgcacc tgcaaaagta caaccaacat aaaattttaa tctttgggga tattaatatt       660
     gacattagga ttaccacagc taagcacaca cattttctca atgttcttag atctcacaac       720
     atgtactgtg caaatgataa gccaacaaga cagcaatctt gtctggataa tgtcataact       780
     aatgtagaga aaaacaagtt tgaaataggg ctttttaata cttctttatt tatcagacca       840
     tgaggatgtg gctagaacgc caacggagtc ccacagaaca tgtgaaccag atacactaga       900
     attgttaaag actcacatat actttcaggt acattaagcg tgatctgtca caattcacac       960
     tgttgatgag gcttttgata gctttatcaa atgtgtttct gaccttttac tgaatattgc      1020
     cctaaagtat taaagagaga caaggttaaa gcaaacaagg caatcataga agtttacatc      1080
     agtggtttac acctgaactc aaaaaattaa gaaatgagtt atgaatctgt acagcaaatc      1140
     aaggaatagc gaagaagcag gcttcataac tgcaattaaa gaacggttag agataataaa      1200
     acagaaacga atgggaatga taattatatt cagcatgcag aaaataaatg caaggctgct      1260
     tggagagttg ttaaatcaga actaggtaac aatattaata gaaactcatg tgacactgcc      1320
     aatatcaccc ctgatcaaat gaatcaattc tttatcagtt ctggtaacaa aggtcagtca      1380
     tttcaacaaa acaactgcta taaagmaggc attaataaac acctagaaca aacaaaatta      1440
     ctcacaccac acaacataca tgaaacaacc acattcaaat gggcacaagt tgctgtgact      1500
     gacattgcag tagccattac aaaacttagc agctcaaaat ctgaagattt ctatgggttg      1560
     tcaamtttcg ttattaaaat gacttctgac atattagcct accacttata tattagtaaa      1620
     ctggatcttt gaaagttttt cttttccagc cagcttaaag aaaacagtag tagtccctct      1680
     acataaaaga agaagcaagt tgtgtgtaga taattaccgt ccaatatctc ttataccaat      1740
     attttcaaaa ataatagaac attgcatgtt tcagcaaatt tgcaaacatt tcaccaacta      1800
     tggaatcctg acaagtgctc agtacggttt cagggaaaat tcatcaacac tgaaagctat      1860
     tgaggatgtc gtttcaacaa tactcagtgc ctttgaggca aagtcatctg ctgatgccct      1920
     actggtggat ctaagcaagg catttgactc ggtgaatcat cagattctca cagacaaact      1980
     aaagtgctat ggtataagag atccagaaat cactctaata gaatcatatc tttgtgatag      2040
     gaagcagaag gtgcaattca atggcataag ctctagtttc ctaaacattt caagaggtgt      2100
     gcctcaaggg tccgtgctgg gccccttact ttttattatt tatgttaatg atcttcctag      2160
     taatatgctg tgtaaatctg ttttgtatgc ggatgacacc actttcattg taactggaat      2220
     gatatagaga atctaaagaa acaaagcaaa gccaacctac aaactgccat cacctggttt      2280
     aatgacaatg aactgacagt aaatcagaat aaaactgaaa atgtgatttt tagtctgtca      2340
     aacaataaca aatctgttaa acttctgggt gtgcatttgg acaccaaact aacttggaac      2400
     atccacacag attccatatg caataaacta tcaagagtga tatacctgtt gcacaaactt      2460
     aggacatgcg taagtgcaaa catgttactt agctcatatt atgctttttt tcatagccat      2520
     ataacwtatt gcatattgmt ttggggcaat tccgcaggag cgaaaacagt ctttatgtgg      2580
     caaaaaaagg ctatcagatg tgttgcaggt gttttcagaa acaatgtatc ttgtaggcca      2640
     ctcttcaaag agctgggtgt catgacagtc ccatcactgt ttattcttaa ttgcctggtt      2700
     ttcactaaag agaacaggtg acatacaaat taaggcaatc actccactgk cacaatacac      2760
     gtcacaaaga gaagattgac cagcccttta caagactgag caagacccaa aacagctata      2820
     cctaccttgg aattaaamtg ttcaatgcct gccaccagaa gcacacatta caccactaaa      2880
     aacttttgaa agccatacaa aactggctca aaaagaaagc cttctattgc catagaatga      2940
     attttttgat tgctcaaaag aggacttaat attttaacct gtactcagtg tatgcataaa      3000
     agcaaaatta tatgtattca gatgtcttct tttttctcct gttaatattg ttatatgtat      3060
     catgatgtat taaactgtca tcaatagcat gtaaaatgct cgaagatgta aataaataaa      3120
     taaacaaata aa                                                          3132
//
ID   Daphne-62_LMi repbase;    DNA;    INV; 2822 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-62_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2822
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 191-191 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..420,386..556,555..1016,935..1165,1102..1239,
FT                 1197..1778,1762..1884,1888..1989,1964..2296,
FT                 2238..2531)
FT                 /product="Daphne-62_LMi_1p"
FT                 /translation="YGNNSLIIAALYRSPGSNIEEFLNCLEELLEGTTMYK
FT                 KHFLFVGDINIDSLNNNNNSVNYLRYMDLLQCYNFKQMNSEPTRVTANTKT
FT                 CIDHVLTNLAREKVNVNTLENHICDHRALTMGIDVGNVDVTESDTVIYKKK
FT                 ILKVIQLYIKRKFNYCKLKMALGNEKWEPVYNATEVNEKWDYFYKVFSNTL
FT                 NETCPLVFKKVNKAVNHKSENLPSEIIELREKMKDYYILFRDTKLQYFSKK
FT                 YKLLRKTYRESLTNLKAQKYTSEISNSSCISKTAWKIMHKESGKQNSCEHS
FT                 NITLKENGEEINDPKEVCEKFIQKFSTAGTNEVMSGHKILILENPASPFTS
FT                 MALLRGTSSHVRPQNFNPGKSSQSFYIHGITERDLLAIISTLRPKMSCGWD
FT                 DISPKLLKECRYELVKPLTHLINTPSVMVYSLTFISEAPDTLDKYSLSNGV
FT                 FPDLLKITEIIPVHKKGEKLTLKTTGQFHKGRKTDTKNYRPISLTSELGKL
FT                 LEKVILNQVESYFTRHNLLNNLQHGFRKGRSTTTAVASFIHEILNKLDKGD
FT                 KVIGTFLDMSKAFDTVDHTILLHKLEEYGMRGLALKLLTSYLKDRKQCVKL
FT                 TYKYNEQLLTTKSTFRTLQCGVPQGSILGPFLFLVYVNNLFEPQNCKVVSY
FT                 ADDISFISWGSDMKSQQQYSRSNSTEISFNTLSAYLTANKLLVNKDKTVIM
FT                 KFILSYNPAMILHLNPHWDLHMQTHISFWASLLMNTVMERTCRTLSWKEHV
FT                 DNICKKISKNVFLLKRVSAFLDHDTLRLIYFGLIHPQLQYGIEIWGGAPAV
FT                 YIDRLFRLQKKAVRVVAKARKKSLVETSLENIKFLQCTPFIYADSHVRETK
FT                 SNSYSVLHLYMQTVMFVKQNPELNMTNSNVHNYDTRGRENFHRIVTNNKAT
FT                 DHSPHRIGAIFYNALPYELKKANLNTLKSRLKQLLIEKCCYSIEDFKL"
XX
SQ   Sequence 2822 BP; 1063 A; 477 C; 516 G; 765 T; 1 other;
     tatggaaaca acagcctgat tatagcagca ctgtataggt cacctggaag taacatagaa        60
     gagttcctaa attgtctaga ggaattgctg gaggggacaa caatgtacaa aaaacacttt       120
     ttgtttgtwg gagacatcaa catagactca ttaaataata ataataacag tgttaattat       180
     ttgcgttaca tggacttact acagtgttat aactttaagc aaatgaactc agaacctaca       240
     agagttactg caaatacgaa gacatgtatc gaccatgttc tcacaaactt agcaagagaa       300
     aaagttaatg taaacacctt agaaaaccac atatgtgacc acagagccct tactatggga       360
     attgatgtag ggaatgtaga tgtaactgaa agtgatacag ttatatataa aaagaaaatt       420
     taattactgt aaacttaaga tggcactagg gaatgaaaaa tgggaaccag tatataatgc       480
     aactgaagtg aatgaaaaat gggattattt ctataaggta ttcagcaaca ccttaaatga       540
     aacttgtcct ttagtttaaa aaagtaaata aagctgtaaa ccataaatcc gagaatctcc       600
     cttctgaaat tattgaactg agagagaaaa tgaaagatta ctatatactc tttagagata       660
     ctaaactaca atatttctca aaaaaatata aactgctcag aaaaacatac agagagtcct       720
     tgactaacct aaaagctcag aaatatacct ctgaaataag caactccagc tgcatcagta       780
     aaactgcctg gaaaataatg cataaggaaa gtgggaaaca gaattcctgt gaacacagca       840
     acataacact aaaagaaaat ggtgaagaaa taaatgaccc aaaagaagtg tgtgaaaaat       900
     ttatacaaaa gttcagtaca gctggtacaa atgaagtcat gtcaggccac aaaattttaa       960
     tcctggaaaa tccagccagt ccttttacat ccatggcatt actgagaggg acctcctagc      1020
     aatcatatca acacttcgac ctaaaatgtc ttgtggctgg gatgacattt cacctaaact      1080
     actaaaggaa tgcaggtatg aattagtgaa gcccctgaca cacttgataa atactccctc      1140
     agtaatggtg tattccctga ccttttgaaa attactgaaa ttataccagt gcataaaaag      1200
     ggagaaaaac tgacactaaa aactacaggc caatttcatt aacctcagaa ctaggcaaat      1260
     tgctagagaa agtaatatta aatcaggtag aatcatattt caccagacac aatctgttaa      1320
     acaacctaca acatggattt agaaaaggga gatctactac aacagcagta gcatctttta      1380
     tacatgaaat attaaataag ctagacaaag gtgacaaggt aataggcact ttcctagata      1440
     tgagtaaagc ctttgatact gtggatcata ccattcttct gcataaacta gaagagtatg      1500
     ggatgagagg gctagccttg aaactactta cctcctattt gaaagacagg aagcagtgtg      1560
     taaagctaac ctataaatat aatgagcagc tcctaacaac caaatcaacc ttcaggacac      1620
     ttcaatgtgg cgtgcctcaa ggaagcatac tagggccttt tctgttcctt gtatatgtaa      1680
     ataatttatt tgaaccccaa aattgcaagg ttgtaagcta tgctgatgac atatccttca      1740
     tcagctgggg cagtgatatg aagtcgcagc aacagtactg agatcagttt caatactctg      1800
     tccgcatacc ttacagcaaa caagctactt gtaaataaag acaagacggt gataatgaag      1860
     ttcatcctca gttataatcc tgcataaatg atactgcatt taaatcccca ttgggacttg      1920
     catatgcaaa ctcacataag tttttgggca tcgttgttga tgaacactgt catggaaaga      1980
     acatgtagat aatatttgta agaaaatcag taaaaatgtg ttcctactga aacgggtctc      2040
     agccttcctg gaccatgata ctttaaggct aatatatttt gggttgatac atccacaact      2100
     tcagtatggt attgagatat ggggtggggc accagcagtc tatatagata gactttttag      2160
     attacagaaa aaggcagtaa gagtggtagc caaggcaagg aagaagagcc ttgtagagac      2220
     atctttagaa aatataaaat tcttacagtg tactccattt atatatgcag acagtcatgt      2280
     tcgtgaaaca aaatcctgaa cttaatatga caaacagcaa tgtacataac tatgatacac      2340
     ggggaaggga aaattttcat agaattgtaa ccaataacaa ggcaacagac cacagcccac      2400
     atagaatagg agcaattttc tacaatgcac taccctatga actcaagaaa gcaaatctaa      2460
     atacgctaaa gagtagactg aaacaattat taatagagaa gtgttgttac tctatagagg      2520
     actttaagtt gtagtgccat cttggaaaac agtgtatata gacatgtctc cgatctatca      2580
     gtggtatgaa agaatgtaat tatatactgt attatgtgta ctgtactatt ataaatataa      2640
     gctaaattgt gtttacacta tagaggaatc tacttgtagt gcccttttga aaaatagtgt      2700
     gtacagacat gtgtctgatc cattgatggt atgaaagaat gtaaatgttt gtatatgtgt      2760
     aatataagct aaattttcct gacaatgtcc gaaaacattt tgttatatgg acagaaaata      2820
     aa                                                                     2822
//
ID   Daphne-64_LMi repbase;    DNA;    INV; 3002 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-64_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3002
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 192-192 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(232..435,413..727,706..1173,1145..2647)
FT                 /product="Daphne-64_LMi_1p"
FT                 /translation="DHWGSIFINKLRTAYTIRKYQIVCGDFNINMLTETPT
FT                 KNQFLNILHSFNFHSQINSPTRVTKTKKSHRQKPKSLIDNIFSNIDTSDTE
FT                 AVNINLGTSDHNALIIKVHSLPTNTNTVHHMYKRIFSTENCRQFGITMANQ
FT                 SWVDVVSQTNTDMAYNVFSSLFMSNFEMCFPKRLNVFPKKTMKINPGHKDS
FT                 NSWITPGIKNSSKTLRRLTSELKTCTDPNFKEYVSNYKNIYRRVISLAKVL
FT                 SNDRLIKKSDNKPKTTWEIVKRETGKRCREQDIVLKTNNNIKIKKEDMPNY
FT                 INNYFLSVPAKLNKNFSKQEKITAPTVVSKYEIGSHKSVSMKLDPTNEQEM
FT                 LKVINSLKTKMSAGMDEVPVSLIKKVALQVLQPLVHIANLSFSEGVFPQRL
FT                 KISKVRPLFKNGDACKIENYRPISLLQSFSKIFEKLIKIRLLSYFDTFDLL
FT                 NCNQHGFRTGRSTETAIQAYTEEIVRNLDNKKSVVGINLDLSKAFDTVNHE
FT                 ILLEKLEAIGVRGIGRKLFESYLQDRTQVVEIISSHNKQKIKLVSDAKKVE
FT                 AGVPQGSILGPLLFLIYINDIKSPNSSSKIMLFADDTSIIISDDSKSLSTT
FT                 TGNVLNYVQKWFQANKLTLNPNKTNYIQYSKANEKEDLHLYLGDQEIEKTQ
FT                 TTKFLGIRIDQNLNWNEHVTYISHKLNSACFALRITSRVCSKECTRSVYFA
FT                 YFHSIVSYGIMFWGETKSHLTDIFKLQKRAIRIMTHSPPQTHCRPLFSQLG
FT                 ILTVPSLYIYKSVMYIRTHLTSFHLNSDFHNYNTRISKNLHVERVRKTKTQ
FT                 KHVSHHGVKLYNALPVYIKEIEDEKKLN"
XX
SQ   Sequence 3002 BP; 1167 A; 521 C; 470 G; 844 T; 0 other;
     tgtttctgtg actgtacttg tattcaggag cactggtgta aaagttatga acttgaaaaa        60
     atgtattccc ccttagtttt tgtggagtta aaatggaggt gtatcattta tgtaaaatca       120
     gggttagagt taaaaacagg cctgagtaac tccctagtgt agaaaaacat tttgaggtac       180
     atcagtccac tcaatataca aaatagaaaa attgtaatct tatcagtata agatcactgg       240
     ggatcaatct ttatcaacaa actgagaact gcttacacga taagaaagta tcaaattgta       300
     tgtggggact tcaatatcaa tatgttgaca gaaactccaa ctaaaaatca attcctcaat       360
     attctacaca gttttaactt ccactcacaa ataaacagtc ctacaagagt aacaaaaacc       420
     aaaaagtctc atagataata tattttcaaa catagatacc tcagatacag aagctgtgaa       480
     tattaaccta ggaacatctg atcacaatgc tcttatcatt aaagttcact cacttccaac       540
     aaacaccaac actgtacatc atatgtataa aagaattttc tccacagaaa actgcagaca       600
     gtttggtatc acaatggcaa atcaatcttg ggtagatgta gtgtctcaga caaatacaga       660
     tatggcttat aatgtttttt cgtctctttt catgtcaaac tttgaaatgt gtttcccaaa       720
     aagactatga aaattaatcc tggtcataaa gactcaaatt cgtggatcac acccggtatt       780
     aagaactcat ccaagacttt gagaagactt acttctgaat taaaaacatg tactgaccca       840
     aattttaagg aatatgtaag caactacaaa aatatatata gaagggtgat cagtctagca       900
     aaagtactta gtaatgacag attaataaag aagtcagata ataaaccaaa aactacatgg       960
     gaaattgtca aaagggaaac aggaaaaaga tgtagagaac aggatattgt gcttaaaact      1020
     aataataaca ttaaaataaa gaaggaagat atgcctaact acattaataa ttactttcta      1080
     agtgtacctg caaaactaaa caaaaatttc agtaaacaag agaaaataac agcaccaaca      1140
     gtagtcagta agtatgaaat tggatcccac aaatgaacaa gaaatgctaa aagtaatcaa      1200
     tagccttaaa acaaaaatgt ctgcaggaat ggatgaagtg ccagtatcac taataaaaaa      1260
     agtggcctta caggttttgc aaccactggt acacattgca aatttatcat tcagtgaagg      1320
     agtgttccca cagagactga aaatttctaa agttagacca cttttcaaaa atggggatgc      1380
     ttgtaaaata gaaaactaca gacccatatc cttacttcaa tctttttcaa aaatctttga      1440
     aaaacttata aaaatcaggc tcttaagcta cttcgacacc tttgatcttt taaattgtaa      1500
     ccaacatggt ttccgtacag ggcgcagcac tgaaacagct atacaggcct atacagaaga      1560
     aattgtcaga aatttagaca ataaaaaaag tgtagtagga atcaaccttg atctctcaaa      1620
     agcctttgat acagtaaacc atgaaattct ccttgaaaaa ttagaggcaa taggtgtcag      1680
     aggaattgga aggaagttat ttgagtcata cctccaagac agaacccaag ttgtagaaat      1740
     catatcttcc cacaataagc aaaaaataaa gttggtatcg gatgccaaga aagtggaagc      1800
     aggcgtccca caaggtagta ttcttggccc cctacttttc ttgatttata taaatgatat      1860
     taaaagtcca aacagctcat ctaaaattat gttatttgca gatgacacaa gtataattat      1920
     aagtgatgac agcaaatcct tatccactac aactgggaat gttcttaatt atgttcaaaa      1980
     atggttccag gcaaacaaat taacacttaa tccaaataaa acaaattaca ttcagtacag      2040
     taaggccaat gagaaagaag acctccattt atatttgggt gaccaggaga tagagaaaac      2100
     acagacaaca aaattcttgg gcatccgtat agatcagaac ttgaactgga acgaacatgt      2160
     gacatacata tcacataaac tcaattctgc atgttttgca ctgagaataa catccagagt      2220
     ctgtagcaaa gaatgtacaa gatcagtgta ttttgcttat ttccactcca ttgtatctta      2280
     cggaataatg ttttggggag aaacaaaatc tcacttgact gacatcttta aattacagaa      2340
     aagggccatt agaatcatga cacacagccc tcctcaaaca cactgcagac ctttattctc      2400
     ccagttagga atacttactg taccctctct gtacatatat aaaagtgtaa tgtatatcag      2460
     aacacacttg accagttttc atctaaattc agattttcac aactacaata cacgcatcag      2520
     taagaatctg catgtagaaa gagtgagaaa aacaaaaact caaaagcatg tgagccacca      2580
     tggagtaaaa ctttacaacg ccttgccagt ttacataaag gaaatagaag atgaaaaaaa      2640
     attaaactag aattaaaaaa ctacctatta gataaatgtt tctatgaaat agaagaatat      2700
     tttcaatcac caaactttta acaaatctct gtatttctac taattgccat tgtatgaagc      2760
     agccatactg taaaatttat gtactttttt gtatatgtat ctctaagtga actgtacata      2820
     tgtcaaagac taatatctga ctaatgcagt agctaattgt ctatttttaa tataatgtaa      2880
     actgttaatt tgtatgtata ttatataatt tgtaaatctg tacagtgcca atgctgtaca      2940
     gaaacatgac gattccaata tcatgtatat gatgcaatgg atgataataa actaaactaa      3000
     ac                                                                     3002
//
ID   Daphne-65_LMi repbase;    DNA;    INV; 4904 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-65_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4904
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 193-193 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1171..1476,1434..1763)
FT                 /product="Daphne-65_LMi_1p"
FT                 /translation="MHTSVEFVSVLERHDRPHLNSSVRRVNLELEQLLGSG
FT                 AGSHIGVVPVDSLSRWDYTRHGLHLNRKGKGKLAGLIAGNLRGGGTDMSGK
FT                 IPVVTGVRAVPFLGNTSGYRCQSSSFFRIGRTKRSQVLREVNIETNLQFNK
FT                 ATKQHNSDISDQQTQLLVKNHHQLSEILSPPSSVTVNVKCKLSLVHQNIRG
FT                 LRSKINELLICIDELGHPTQST"
FT   CDS           join(1833..3869,3904..4329)
FT                 /product="Daphne-65_LMi_2p"
FT                 /translation="SGNGGWRSSTFIRSCYKFNTIDIHKFCLEQHMEACAT
FT                 EVEFHNKSFIIVTVYRVPNGNFNLFINHFEALLAYLITRKKELVLAGDFNV
FT                 DFLENSPSKKLLQSVALSFNLIHTVNFPTRIAKGSKTAIDNIFIEMSNDQN
FT                 YVIKPIISSLSDHDMQLLLLDINTDQNIKSIKSEFKRVVSKGKIDHFRKLL
FT                 KDMNWSDVYSANSMDEKYNTFINNVLNLFENCFPPKLTQIRPKSTKKPWIT
FT                 RGIKVSCKTKRKLYLSIRNSSDVNALDHYKTYCKILKTVILTSKQMHYQNR
FT                 IVLSDNKIKTIWDIVKEETGRTGYEEEHIALRVDDTRVTDVCSVAAIFNKH
FT                 FLTTKNMGLSGSVTAAMEYLTPVTTNNCSNMSMTLTTPLEVMSTIKSLKSK
FT                 NSSGYDNISTNLIKKCASELSDILSYLCNQSFISGTFPEWLKYAEVKPLHK
FT                 KGDKEIPSNFRPISLLPAFSKILEKIMYSRLLKHLTTNKLLSMSQFGFLKG
FT                 SDIEKAIYTYSENVLNSLDNKLHATGIFCDLSKAFDCVNHNILLSKLEYYG
FT                 VTGSAAEWFKSYISNRKQRVSIGKRGVLNYQASSNWELITCGVPQGSILGP
FT                 LLFLVYINDLSSSTLSDAKFVLFADDTNIAINSKSNIALESRLMNFHGHNK
FT                 WFLANSLSLNLEKTHICSLGLVKSFLPVYAKCQILRITADNKFNWEGHTTE
FT                 LLKRLNKSLFAMRMLSDIGDIKIKKLAYYAYFHSIMSYGIIFWETHQAKQS
FT                 FQSPKTCVRIICGVNSRTSAEGYLRNWGYYYCFPIHLFSNEICHKNISFFK
FT                 PIAQFMGSILETRITFTKI"
XX
SQ   Sequence 4904 BP; 1649 A; 816 C; 981 G; 1458 T; 0 other;
     tagccctgcg caagacgacg ctcgcgactt ttgtgctcca gcaaatttaa gtattttaga        60
     tagtaataag acttttttaa tagttataag taattaataa cgtgtattag tgtcctcttg       120
     aagcgcacta ttaaaggttt cactttgctt tgtgtatttt tcgagaaaac gcgtaaagat       180
     taagtaggtc tgcagtcgta tttttgcttg cgtctttttg cacagtaatt ttaaagaatc       240
     tcggtaattg ttcttgtttt ttcctcctag catattaagt acagcgtatc cccgcattgt       300
     tttatttatt atttgtaaaa gcagcgtaaa atttaatttg ttttagagac tttgcgctta       360
     ttacctttgt ttacatccag tcgcgagtag gcctaaattt cgcgtacacg ttttctttgt       420
     tttttaaggt aatttgacta cttctaaata aaataatact tttaccatga gtgcaaagtg       480
     tcagacttgc cgtagaattg tcagttccgg ggtatggtgt gatgggtgca gtaatttttt       540
     tcttggggtg actgtagcgg cgcgggaatt gggcaagtga gcgaactcat cagtggtttt       600
     gcaggctatg tactagggat aggaagatag tggaacagga ggggaaatcg cccttcaggc       660
     aggttagatc aggctaagag ggatctgaca ggttaaagag ggaggagggt aatcagaggt       720
     gggaagtggc aacaggtgga aagaaaaggg ccagaactca acgacagctt tgtggtgaat       780
     gtaaaaaata agtttgacct gttgcttcag ttagaaactg atgagcctca gatagaagta       840
     gacgtagaca gggctgaaca aactttcaac aggaatttga ataagaaggt agggaaatca       900
     gcaaaaagga agaaagtttt gttattaggt agctcgcatg ccagaggtgt gggccaactc       960
     ctgcaggatg aactaggaac agaataccag gtcacaagtt tcttcaaacc aagtgctggt      1020
     ctgggtcagg tgacagagga tttaggttca ctgtgtaaag atttcaccaa ggaggacacc      1080
     gtggttattg tgggtggtcc ggggaacagt attgacagag atccggggtt caacatagag      1140
     tgtgacctgg caaagattgc atcagcatcg atgcatacca gtgttgagtt cgtgtctgtt      1200
     ctggagcgcc acgaccgacc tcatttgaac tcttctgtta ggagagttaa tttggagttg      1260
     gaacagctgc ttggatcagg tgcggggtca cacattggtg tggttcctgt tgattcactc      1320
     agtaggtggg attatactag acatggccta catctcaata ggaaagggaa gggtaaactg      1380
     gctgggctaa tagcaggaaa cttaaggggg ggaggcactg acatgagtgg taaaatacca      1440
     gtggttacag gtgtcagagc agttcctttt ttaggatagg caggacaaaa agaagtcaag      1500
     ttctaagaga ggtcaatatt gaaacaaacc ttcagtttaa taaagcaact aaacagcata      1560
     actctgacat atcagatcag caaacacagc tgttagttaa aaatcatcac caattatcag      1620
     aaattttatc tccacccagt tctgtaacag tcaatgtaaa atgcaaatta tctttagtgc      1680
     accaaaatat tagagggcta agaagcaaaa taaatgaact acttatatgc attgatgaat      1740
     taggtcatcc aacccagtcg acataatctg cctctctgaa catcatgtga ccactggtat      1800
     agatttgcta agtattccag gatttaggtt agagtggaaa tggaggatgg aggagttcca      1860
     cattcattag aagttgttat aaatttaata ccatagacat tcataaattt tgtttagagc      1920
     agcatatgga agcatgtgca acagaagtag aatttcataa taaatcattt ataatagtaa      1980
     ctgtgtacag agtaccaaat ggtaacttta atttgttcat aaatcacttt gaagctctgt      2040
     tggcttattt gataacaaga aagaaagaat tagtgttggc tggtgatttt aatgtagact      2100
     tccttgaaaa ctctcccagt aagaaattat tgcagtcagt agcattgtca ttcaacctaa      2160
     ttcatactgt taattttcca actaggatag ctaagggctc aaagacagcc attgataata      2220
     tctttataga aatgtcaaat gatcaaaatt atgttataaa accaataata agcagccttt      2280
     cagaccatga catgcagtta cttttactag atattaatac tgatcagaat ataaaatcta      2340
     tcaaatctga gtttaagagg gtagtcagta agggaaaaat tgatcatttt agaaaactgc      2400
     tcaaagacat gaattggagt gatgtctaca gtgctaatag tatggatgag aaatacaaca      2460
     ctttcataaa taatgtcctc aacttatttg aaaactgctt tcccccaaaa ctaacacaga      2520
     ttagaccaaa gtctacaaag aaaccatgga ttactcgagg aataaaggtc tcctgtaaga      2580
     caaaaaggaa actataccta tcaattagaa acagttcaga tgtaaatgct ttagatcatt      2640
     acaaaacata ctgcaagata ttgaagacag taatactgac atcaaagcaa atgcattatc      2700
     agaataggat agtcctatca gacaacaaaa taaagacaat atgggatata gtaaaggagg      2760
     aaactggtag aaccggatac gaagaggagc acatagcatt aagagtagat gacacacggg      2820
     taacagatgt gtgcagtgtt gctgcaattt tcaacaagca tttcttaact accaaaaata      2880
     tgggattatc agggtcagta actgctgcaa tggaatatct cacacctgtg actacaaata      2940
     actgcagtaa tatgagtatg acactcacaa caccactaga agtaatgtcc accataaaat      3000
     ccttaaaatc aaaaaattcc agtggctatg ataatatatc aacaaatttg attaaaaagt      3060
     gtgcttctga gcttagtgat attttaagtt acttgtgtaa ccagtctttt atcagtggaa      3120
     catttcctga atggttgaaa tatgctgaag ttaagccatt acataagaaa ggagataaag      3180
     aaattccatc aaatttccgt ccaatttcac ttttgcctgc attctcaaaa attttagaaa      3240
     agataatgta cagtcgtctt cttaaacacc ttaccactaa taaactatta tccatgtcac      3300
     aattcgggtt tctaaagggt tctgatattg agaaggctat ctacacatac agtgagaatg      3360
     tacttaattc attagacaat aaattacatg ccactggtat attttgtgac ctgtcaaagg      3420
     catttgactg tgtaaatcac aatatacttt tgagcaaatt agaatattac ggcgtaacag      3480
     gaagtgctgc agaatggttc aaatcgtata tctctaatag gaaacaaagg gtgtcaatag      3540
     gaaagagagg tgtactgaac tatcaggcct catcaaattg ggaactaata acatgtgggg      3600
     tcccccaagg ctctatctta ggccccctgc tttttcttgt atatatcaat gacctttcat      3660
     catcaacatt atcggatgcc aagtttgttt tatttgcaga tgacacaaat attgcaataa      3720
     atagtaaatc aaatatagcc ttagaaagtc ggctaatgaa ttttcatgga cataataaat      3780
     ggttcctagc caattctctg tcactaaacc ttgaaaaaac acatatatgc agtttaggac      3840
     ttgtaaaaag tttcctgcca gtatatgcct agagtatgac aacaaggaaa tagaagaagt      3900
     tgaaagtgtc aaattcttag gattacagct gataataaat ttaactggga ggggcatacc      3960
     acagaactgc tgaagcgcct aaacaagtcc ctgtttgcta tgcgaatgtt gtcagacata      4020
     ggagatataa aaataaaaaa gctagcgtat tatgcatact ttcactccat aatgtcatac      4080
     gggattattt tctgggaaac tcatcaggcc aagcaaagtt ttcagagccc aaaaacgtgc      4140
     gtacgaatca tttgtggtgt caactcaaga acatctgcag agggctattt aaggaactgg      4200
     ggatactact actgcttccc aatacattta ttctctaatg aaatttgtca taaaaatata      4260
     tcttttttca aaccaatagc tcagttcatg ggatcaatac tagaaacaag aataactttc      4320
     acaaagattt aaagtcactt actttggctc agaaaggtgt ccactattca gcaatacaca      4380
     ttttcaataa catgccagca gccataaaaa atttaactca caataaagtt cagtttgaaa      4440
     agagtctaaa ggattttttg gtggccaact ccttctactc cattgatgaa tttcttagca      4500
     gaagtgattg atgtatgtta ttgtatataa tattcacaaa tgtgaatatt gtgttcagtc      4560
     tgacttcagt actaatcttg tgcagtaatg tgatcattgt aaataagtgt tgtaaaaaat      4620
     agataagaat tatcatatgc acctagtata ttcaacattt agtatgtagt aataagtttt      4680
     atgtccttta aaatgtaaat attcttaaga taattgtttt tcctgaccaa ttccacatcc      4740
     acaagggcaa ttacatttgg gatctgtgga aggtacatta acacatctgc tctcattttg      4800
     taagtattta ttgtgtatct tgtttctgac atgttctaca tccaagagga tctcctcaat      4860
     ttggatctac tggaacgaaa agtacatcta atctaattct aatc                       4904
//
ID   Daphne-66_LMi repbase;    DNA;    INV; 4600 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-66_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4600
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 194-194 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(498..1157,1093..1365,1467..2228,2296..2865,
FT                 2756..4096,3987..4412)
FT                 /product="Daphne-66_LMi_1p"
FT                 /translation="MSKKQGNGYCRHKNSIQEREIIILSDSHGKELAANVR
FT                 NKNTNLKASRITKPGAPLHEILKDCKNLLRPGYNCIIVGGSNDVYQNNSIQ
FT                 AVRSLKDTLQSNTEVNFFVVSIPQRHDLMEKSCVNTEIVITNRKFEKVCHS
FT                 VQNATFIQVTSSVREHFTKHGLHRNRKGKRYMCEEILKAIEEKNVKKPKTI
FT                 QLQESPVLISPQTEKGITLQKNQLQQQQNVSHHRQKKELLSRKISFNSNRM
FT                 SRGITKQEKARRSQQSSKKNWRNYSSRQADRRLTYCAERTSSPKERNEISS
FT                 GRGHTVEGKQPQTGEGDLLWCREKENSSSGPSEGFFTDQGKEVKSRVSSVQ
FT                 KCTSLTILHQNMQSIRKKIQQLEVELFSSCISVVCITEHWYKEEEIVNVAL
FT                 SNYERACFYCRTSMKGGGSCIFVKRGLQFKVRSDISILSVDKHFEISGIDL
FT                 MVHKEKLTILCVYRAPSGSVDVFMSKLNQVLDMTCKFKGSVILCGDININL
FT                 SINNEVSNTYQNILYSFGVTQVVDRATRITKTSASLIDHIITNIDKNKCDI
FT                 NVQQLDFLTILVKLLISIFFKATTHQTWEEVYAEENVEAKYCKFASIFKLK
FT                 FEESFPKVLRPVGGTDSKKWVTKGIIKSSQTFKFLSSLKSQRCDPEFLDYY
FT                 HKYKRIYRKVLLAAKRAMNDSIIYNSKNKSKAIWTVVRKETGKEKSEANLQ
FT                 IRHRGVLISNPNDLANFINSYFTSIATELQKNFPKFICIACQKVFNKFNGP
FT                 VTDYTVISLVLQQNYRKTFPSSYALHARRYSTNSMVLLPTTEQEVKNVVHR
FT                 LKNKKSSGLDEVPMCVLKECIDSIKGPLTDIINESFSSGIFPEYLKQARVL
FT                 PIHKKGDTETIENYRPVSLLSSFSKIIETIMKDRLMDYLNKYNLLTKSQFG
FT                 FREGSSTEAAIAEFTRVIMEAMDRGDCVTGIFLDLSKAFDTVDHKILLHKL
FT                 EALGIRGVVNKWFQSYLTNRVHRVEISQPNKNPKYVEKHLSDAKLINIGVP
FT                 QGSILGPILFLIYINDFPESVTHGDKILFADDSNIIITGKTQEMLLSKADN
FT                 MLKDVCKWSEVNKVTINSSKTHSMNFAINKTNNIKLNLNGDPMNCVMNTKF
FT                 LGMDIDNQMKWREHTSRIAKRISSACYALRVLAAVCNSNCLKVTYHAYIHS
FT                 LLRYGIIFWGSDRQNIGKNFHIAKEGSSDNNKTEQKGSLPGIVFSGAQTGR
FT                 ILEKIFILQKRALRIITKQNKRAHCRELFKELGILTVPCEYIYQTVVYVRK
FT                 NVHRYATNSATHYHNTRIREHLHLPRKNKCRTQNSSEYQGLKLYNKLPHEI
FT                 KQIDKMFRFKKAVKMFLISKCYYTIEDYFNEK"
XX
SQ   Sequence 4600 BP; 1804 A; 728 C; 916 G; 1148 T; 4 other;
     ggcggcgagt gtagattgtt gattaatagt tccgtaaaaa aggccattct tgtgtttaat        60
     tgtgtagtat gtggtgataa agtggtaaaa gtataatatg tgttccttca tgcataggtg       120
     gatacatttg gagtgcataa aatactgtga aacagtaaat gaaatatgtg actgtggaaa       180
     tgtttactgc aatccacgtg attttgtaaa agctgaatat tttagaaaac gtgaacaatg       240
     tgtcgccaaa gtgttgcaaa gcagtgtcga agcagcaaaa acgtatattc aaatgctgca       300
     aacaacgata gccttasaaa attcgaagca acaaacttga aagaggaaam aacagtctta       360
     gtaggccaca aaaagttcgt caggagaaac amtgtacagt accggtaggt catgaactca       420
     aaacttggaa gaaatccaca ttaccatcgc aagacgakag catcacgaaa gaaaaagtgg       480
     agtgtttacc gatattaatg tccaagaagc aaggaaacgg gtattgcaga cacaaaaaca       540
     gtatccaaga aagagaaata atcatacttt cagatagtca tggaaaggaa ctagctgcca       600
     atgtgcgaaa taaaaatacc aatttgaaag caagcagaat aacgaaacca ggagccccac       660
     tacacgaaat attgaaggac tgcaaaaact tactaagacc aggctacaac tgtattatag       720
     tgggaggctc aaatgatgtt taccaaaaca acagcattca agcggtaagg tctttaaaag       780
     acacactgca aagtaacaca gaagtgaatt tctttgtggt gagcatacca caaagacatg       840
     atttaatgga aaaatcgtgt gtcaacacag agatagtaat aacaaacaga aaatttgaga       900
     aagtgtgtca tagtgtgcaa aatgcaacat ttattcaagt aacatcttca gtaagggaac       960
     attttacaaa gcatgggcta cataggaata ggaaaggaaa aagatatatg tgtgaagaaa      1020
     tcctgaaagc aattgaggaa aaaaatgtga aaaagccaaa aaccatacag ctacaagaat      1080
     ctccagtcct aatctcacca cagacagaaa aaggaattac tctccagaaa aatcagcttc      1140
     aacagcaaca gaatgtctag aggaatcaca aagcaagaaa aggctagaag atcacaacaa      1200
     agcagcaaga aaaactggag aaactacagt tctagacaag cagacagaag actgacctac      1260
     tgcgcagaaa gaacttcatc tccaaaggaa agaaatgaaa tatcatcagg gagaggacac      1320
     accgtagaag gcaaacagcc gcagacaggt gaaggggacc tcttataggg gcggggcaga      1380
     aatgaagacc gccagggacg agtcatcaac aggaggggca aagacacaga agaaatttca      1440
     gcaacagctc caaacagtga aaatagtggt gcagggaaaa ggaaaacagt tcttccgggc      1500
     catctgaagg attttttact gaccagggca aagaagttaa atccagggta agcagtgttc      1560
     aaaaatgtac tagtctaaca attctccacc aaaatatgca gtcgataagg aaaaaaatac      1620
     agcaacttga agtagaacta ttttcctcat gtatctcagt agtatgtatt acagagcatt      1680
     ggtataaaga agaagaaata gtgaatgtag ctttaagcaa ttatgaaaga gcatgttttt      1740
     attgtagaac atccatgaaa ggtggaggat cttgtatttt tgtaaaaaga ggcttacagt      1800
     ttaaagttag atctgacatt agtatactca gtgtagataa gcattttgaa atctctggaa      1860
     tagatttaat ggtacataaa gagaaattaa caatactgtg tgtatacaga gcaccaagtg      1920
     gtagtgtgga tgtctttatg agtaaattaa accaagtgct ggacatgaca tgcaaattta      1980
     agggaagtgt aatattgtgt ggggatatta atataaactt aagcataaac aatgaagtta      2040
     gtaacactta ccagaatatt ctgtatagct ttggggtcac acaggtagta gatagggcaa      2100
     caaggatcac caaaacatca gcttcattaa tagatcacat aataactaat attgataaaa      2160
     acaaatgtga cataaatgta caacagctgg attttctgac cattcttgtc aagttgttaa      2220
     tatcaattta agtgtacaga aatcacatgg gagacaaggt tacaaaaggg ttttttccaa      2280
     atcaaaaatg tgtgattttt caaagcaact acacaccaga cctgggagga agtgtatgct      2340
     gaggaaaatg ttgaggctaa gtactgcaaa tttgcatcaa tatttaaact aaaatttgag      2400
     gaatcattcc caaaagtatt acgtccagtt ggaggtacag attctaagaa gtgggtcacc      2460
     aagggaatta ttaaatcctc ccaaactttc aaattcctta gctcactaaa aagtcagaga      2520
     tgtgacccag agtttcttga ttactatcat aaatacaaaa ggatatacag gaaggtgttg      2580
     ctggcagcaa agagagctat gaatgatagc atcatataca attcaaagaa taaaagtaaa      2640
     gcaatttgga cagtggtaag aaaggaaaca gggaaggaga aatcagaggc aaatctccaa      2700
     ataagacata gaggagtatt aattagtaat cctaatgatc tggccaattt cataaacagt      2760
     tatttcacta gtattgcaac agaattacag aaaaactttc ccaagttcat atgcattgca      2820
     tgccagaagg tattcaacaa attcaatggt cctgttaccg actactgagc aggaagtcaa      2880
     aaacgtagtg cataggttaa aaaataaaaa atcctcaggc cttgatgaag tcccaatgtg      2940
     tgtgctaaag gaatgtatag atagcataaa gggacctcta acagatatta taaatgaatc      3000
     cttcagctca ggtatctttc ctgagtactt gaagcaagcg agagtcttgc caatacacaa      3060
     aaagggagat acggaaacca tagaaaacta tagaccagta tcactattgt cttcattttc      3120
     aaagataatt gaaacaataa tgaaagatag acttatggat tacctcaata aatataattt      3180
     gctaacaaaa tctcagtttg gattcaggga aggcagcagt acagaggcag caatagcaga      3240
     atttacaaga gtcattatgg aagccatgga tagaggtgat tgtgtaacgg gcatcttttt      3300
     agatttatcc aaggcatttg acacagtaga tcataaaata cttctccaca aactagaggc      3360
     actaggtata cgaggagtag taaacaaatg gttccaatca tatcttacga atagggtaca      3420
     tagagtagaa atttcacagc ctaataaaaa tcccaagtat gtagagaaac atctgtcaga      3480
     tgctaaacta attaatatag gagtcccaca ggggagtata ttgggcccaa tcctattttt      3540
     aatatatata aatgacttcc cagaaagtgt cactcatggt gacaaaattc tgtttgctga      3600
     cgatagcaac ataataatta cgggcaagac acaggaaatg ctgctgagta aagccgataa      3660
     catgttgaaa gatgtatgca aatggtcaga ggtaaataaa gtaaccatta atagcagtaa      3720
     gacacacagt atgaattttg ctataaataa aacaaataat attaaattaa atctaaatgg      3780
     tgaccccatg aactgtgtaa tgaacacaaa atttttaggg atggatatag ataatcaaat      3840
     gaaatggagg gaacacacct caaggatagc taaaagaatc tcatctgcat gctatgcttt      3900
     gagggtacta gcagctgtat gtaacagtaa ctgcctcaaa gtaacatatc atgcatacat      3960
     tcattcactc cttagatacg ggataatttt ctggggctca gacaggcaga atattggaaa      4020
     aaattttcat attgcaaaag agggctcttc ggataataac aaaacagaac aaaagggctc      4080
     actgccggga attgtttaaa gaactgggta tactgactgt tccttgtgaa tacatttacc      4140
     aaacagtagt gtatgtaaga aaaaatgtac atcgctatgc cacaaacagt gctacacatt      4200
     atcataatac gaggattagg gaacacctgc accttcccag aaaaaacaaa tgtaggactc      4260
     aaaacagcag tgaataccaa ggactaaagc tgtacaataa gttgcctcat gaaattaaac      4320
     aaatagataa gatgttcaga tttaaaaaag ctgtcaaaat gtttctaatt tcaaaatgtt      4380
     attatacaat agaagactat ttcaatgaaa aataatcaga ataatgtaaa aaaaatcatc      4440
     atttagcgaa ataagaaagt ttttgtgtac agtatagtgt gttatattgt acctacatat      4500
     gaaatatatg tattatatgt attttcttta tgtacataca cattgacgaa acccatatca      4560
     tgtaaatgat aaatggtgaa taaatcaatc aatcaaaatc                            4600
//
ID   Daphne-67_LMi repbase;    DNA;    INV; 4254 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-67_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4254
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 195-195 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(571..861,840..1112,1091..1297,1225..1683,
FT                 1710..2003,1982..2497,2526..3779,3763..4023)
FT                 /product="Daphne-67_LMi_1p"
FT                 /translation="MNETRNVIRSAKSLYRSARIVISGILHRRLVSSAYIN
FT                 YINSGIRQQCDELGAIFIDXNRFMSDRCLGRDGLHLNRLGSMTLSKMLFDV
FT                 CKVIKNQGNGNKKPGKLKYTEGDDACGIKRLESDANDKTFKKIQSESISVT
FT                 NLNSKCKVSVINHSILEYGRSKTPMNDSETVVKTSRPTCKYNSVSTVTQFS
FT                 EYSDTVVKTSRPTCKYNSNLQIYYHNVQSLSNKIDXLNILLTNKLRTYPWH
FT                 VLQNTGSIQKKLNSLHQAQDISMACLTEHWLNSEEIKLTPLTDFKLGDHYI
FT                 RLKDKHGGVAIYTKQHIESSPLPSLKEIGAXSIFEIAAIKLDSLNLIIATI
FT                 YCTPSSNLNDFMNKFELFLNKACQWKYDIIISGDFNIDFLTHNRNRETFIN
FT                 LAKSIIYSASSTSRQETKFLYTKIVRSTVQVYNMGYSDHRAVILNVSVNDD
FT                 ISIPVPPKNLQRYYTPENFNKLNVLLSRENWTDLYAANDVNTKFNTFLNTM
FT                 VHHFEEAFPKNLRGIPQKFVRISTGKKNNNWITPGIKTSCKNKRILHILCK
FT                 QSSGFPQLRKYYQSYTCILRRVVRQAKRMYNDECITNSNNKVKTMWNIIKR
FT                 ERGENKAIHTNIVINHSNELITDPGTVANTFNEXFTNIADKMNKNNSNMSY
FT                 QPSDEKEITIVXSQYLSLKSIKVXLQKHSVNWCSSNXHKNXADTIAEPLAH
FT                 ICDCSFQEGIFPESLKLSRVIPVFKKGDSKDMNNYRPITISSCFSKVFEKI
FT                 MHKKLMDFINKKGLLSLSQHGFRNNRSTETAVYDCISTILDLVDMKQSITG
FT                 IFLDLSKAFDTVDHKILLEKIELYGIRGVANKWVASFLSNRIQKVSMKHTN
FT                 KQLNSVTEILSNSQPMKQGVPQGSVLGPLLFLLYINNLNLNVDAHKIVIFA
FT                 DDTTVLLKGDNTVAVQKAVNKATEQLSNWATVNKLTINTKKTVSMNFHTSQ
FT                 NANPSQPLVIVNDQQVDTNSDFKFLGLWVQDNLKWDSHIEKVNAKISTGCY
FT                 ALSVLKSCTGQKTVISAYYAYIQAHLRYGVIFWGNSPTALSTFRIQKKAAR
FT                 IINGSKARDSCKPIFRKLEILPLPCLYILETIRFLKKHNVKKNIMSSEPRL
FT                 KRNAEIHDHDTRSKSNLHILQTATLLCRKGTLHMGLQLFNKLPTNIKEIDD
FT                 NQKFAKTLRSYLLSHCFYSVKEYMEQ"
XX
SQ   Sequence 4254 BP; 1609 A; 837 C; 721 G; 1079 T; 8 other;
     gaaagaacac attaaagctg caagaagtcg gcatcctgca tctgagcaac tcgccttcaa        60
     ccacattact agaccatgac agttctcttt ggaaaggaaa cagagttact gaaagatgca       120
     catcagcttg caaatcagca tctgcatggt acaaccacac tagaccatga cagtttcgtc       180
     ggaaagtgat attcccatgt gcaatcccca catgtaaact gagggaataa aagattcaga       240
     tgacaaatcg tgtgacaaac ctgaaaataa atacagttgg aaatctgtgt catacaaaag       300
     taaaggcaaa cgtaagagtg agtctacaaa acaagtggat aaaaatgaat tcctcaccat       360
     tggagactat attgaaaaat acagcagact aatggacatc gatgtccgac ctgccattcg       420
     acctcagcaa atcataagat tttaaaaact ataaactcaa aacactcaaa tgcaaaacaa       480
     tctggttcta gtgatcctaa aacagatttc aaaggtgttg taattcatgt agggacgaac       540
     tctctccaaa gcagcagcca ggaagatctc atgaacgaaa caaggaatgt aattcgctcg       600
     gccaaaagtc tgtacagaag tgctcgaatt gtaataagtg gaatattaca tcgcagattg       660
     gtgagtagtg catacattaa ctacataaac agtggcatta gacaacagtg cgatgaactg       720
     ggtgcaatat tcatcgatcm taacagattt atgagtgaca gatgcttagg tagggatggt       780
     ctgcacttaa atagactggg ctcaatgacc cttagcaaaa tgctttttga tgtgtgtaag       840
     gtaataaaaa accagggaaa ctaaagtata ctgaagggga tgatgcttgt ggaattaaaa       900
     gactcgaaag tgacgcaaat gataaaactt ttaagaaaat tcaaagtgaa agcatatctg       960
     taactaatct aaactctaaa tgcaaagtat ctgtaattaa tcattcaatc ttagaatatg      1020
     gacgtagtaa aacacctatg aacgacagtg agacagtagt taaaacctca agacccacat      1080
     gtaaatataa ttcagtgagt acagtgacac agtagttaag acatcaagac ccacatgtaa      1140
     atacaattca aatctacaga tctattacca caatgttcag tccctatcaa ataaaattga      1200
     tsaattaaac attctactaa ctaacaagct caggacatat ccatggcatg tcttacagaa      1260
     cactggctca attcagaaga aattaaactc actccactga cagatttcaa actgggtgat      1320
     cactatatca gactgaagga caaacatggt ggagtagcta tctacaccaa acaacatatt      1380
     gaatctagcc cactaccctc cctaaaagaa ataggagcak acagtatctt tgaaattgca      1440
     gctataaaac tagatagttt aaacctcatt atagccacta tttactgtac accatccagt      1500
     aatcttaacg attttatgaa caaatttgaa ttgttcttaa acaaagcttg tcaatggaaa      1560
     tatgacatca tcatatccgg agactttaat atcgattttc tcacccataa tagaaacaga      1620
     gagacattta tcaatcttgc aaaatccata atctacagtg cctcgtcaac gagccgacaa      1680
     gaataacacc cacttctaaa ccaccctaga ccaaattctt gtatacaaaa atagtcagat      1740
     caacagttca agtatataat atgggataca gtgatcaccg agctgtcata ctgaatgtca      1800
     gtgttaatga cgatatctca atcccagtcc cacccaaaaa ccttcaaagg tattacactc      1860
     cagaaaactt caacaaactc aatgtcctcc taagtagaga aaactggaca gatttatatg      1920
     ctgcaaatga tgtcaacaca aaatttaaca catttctaaa cactatggtc caccactttg      1980
     aagaggcatt ccccaaaaat ttgtaagaat aagcaccggg aagaaaaaca acaactggat      2040
     tacaccaggt ataaagacct cctgcaaaaa taaaagaata ctccacattt tatgtaaaca      2100
     aagcagtggc tttcctcaac taagaaagta ctatcaaagt tatacatgta tccttagaag      2160
     agtggtaaga caagctaaaa ggatgtacaa tgatgagtgc atcactaatt caaacaacaa      2220
     agttaaaaca atgtggaata tcataaaaag ggaaaggggg gaaaataaag ctatacatac      2280
     taacatagtg ataaatcaca gtaatgagtt gataactgat cctggaactg tggccaacac      2340
     attcaatgaa twctttacaa atatagctga taaaatgaat aaaaacaatt ctaacatgtc      2400
     ctatcaacca tcagacgaaa aagaaatcac aattgtatwg agtcaatatt tatcactaaa      2460
     gtcaataaag gtgatkttgc aaaagcactc tgtgaattaa aaaattctta ttcagctggc      2520
     attgatggtg ttccagcaat tstcataaaa attgkgcaga tactattgct gaaccactag      2580
     ctcacatctg tgactgttca tttcaggaag gtatcttccc agaatcactg aaactctccc      2640
     gagtaattcc tgtttttaag aaaggtgata gtaaagacat gaataactac aggcctatca      2700
     caatctcctc ctgtttttct aaagtatttg aaaaaattat gcataaaaaa ctaatggact      2760
     tcataaataa aaaaggcttg ctaagtttat cacaacatgg gttcagaaac aatagatcta      2820
     cagaaacggc agtatatgac tgcatcagta cgatactaga tctagtagat atgaaacagt      2880
     ctatcacagg tatatttcta gatctgtcaa aggcctttga cacagtggat cacaaaatat      2940
     tgctggaaaa aatagagttg tatggtatca gaggagttgc aaataagtgg gtagcatcat      3000
     tcctaagcaa tcgcatacaa aaagtcagca tgaagcatac caacaaacaa ctaaattcag      3060
     taacagaaat cctttctaat agtcagccca tgaaacaagg tgtgccacag ggctccgtat      3120
     tgggacccct gctgttcctc ctgtacatta ataatttgaa tctgaatgta gacgcccaca      3180
     aaatcgttat attcgctgac gatacaactg tactgctcaa aggagataac acagtggcag      3240
     ttcagaaagc agtgaataaa gctaccgaac aactcagcaa ttgggccaca gtcaacaagt      3300
     taactattaa cacaaaaaag acagtctcca tgaacttcca tacctcacag aatgccaacc      3360
     cctctcagcc acttgtaata gttaatgacc aacaagtaga taccaattcc gacttcaaat      3420
     tcctgggatt atgggtgcaa gataatctaa aatgggacag ccatattgaa aaggttaatg      3480
     ccaaaattag tactggatgc tatgcgctga gcgtattgaa atcatgtaca ggccagaaaa      3540
     cagtaataag tgcatactat gcatacattc aggcccactt aagatacggt gtgatattct      3600
     ggggaaattc tccaactgcc ctcagcacct tccgaataca gaagaaagct gcgaggataa      3660
     taaatggcag caaagctaga gactcgtgta aacctatatt caggaagctg gagatcctac      3720
     cactgccgtg cctgtacata ctcgagacaa taagattcct aaaaaaacat aatgtcaagt      3780
     gagcccagac ttaagagaaa tgctgaaata catgatcatg acaccagatc aaaatcgaac      3840
     ttgcacattt tacaaactgc caccctgcta tgtagaaagg gaacactcca catgggccta      3900
     caactattca ataagctccc cacaaacata aaagaaattg atgacaacca gaaatttgca      3960
     aaaacattga ggtcttactt actgtcccac tgcttttatt ctgtaaaaga atacatggaa      4020
     caataacact gcagactgtg tcaatataca gttgtgatct atttaaaaaa aaatcctata      4080
     ttatggatac tatgtatagt tacccttaag ctaacatgtt taatacatgt ccatgaaaat      4140
     catattttgt gtgtactatg tatagctatc ctcaagctgc tatgtttaat acataatgtc      4200
     caatatctgt acacattgtg taaattcaga tcaaatggga taaataaata aata            4254
//
ID   Daphne-68_LMi repbase;    DNA;    INV; 2724 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-68_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2724
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 120-120 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2724 BP; 1092 A; 403 C; 529 G; 697 T; 3 other;
     tcccacmaga tgccaaggta aatccaagac acaattagac catgttagga ggtcaagcct        60
     gttcccactg aacacaacat atctgatcac tctgggcaag tagtgatatt taggacatgg       120
     gcagagaaga agtttatatg tagaacttag acaaactaaa tattcaaatc taaataggct       180
     aaatgagcaa ctgaaaaaga agctgggggt gtgtatatag ggctgagaat atagatgaga       240
     aatgggactc attctgttca gtattgaata attatgtaga aacatcaagc ccaaagaagt       300
     ttcgaaaatg taacacaaaa aaagacatgg atcacgaagg aaattatgaa gatcagggga       360
     gaacttaaat tttgtatggc cagtacaaga cgataaaacg gaacagagcc atgagatcta       420
     caaaagctta aaaaaagaat acaggaaaga aatatgtgct gcaaaaaaga caatttatac       480
     ggaatgaata gaaggatcaa aaaacatggc taaaacagcc tggtcacaca taaacataga       540
     aagaaaaggt acaaccagct ataacagaaa acatagtaat tgaaaaggat ggcaaaacat       600
     atgacgaccc acaggacact agcaatatat ttaatcagca ttatagtaca gtagtggata       660
     agctattaaa gcaaaatacc ttagaagata aggccaaaag taaaatttta gatgtaaaaa       720
     atagtatatt catgaagcca acaagtgaaa cagaagttgg caatgtaata caaaatctga       780
     aaaccaaaaa ctcagaagga ctggacggca tatctaccag gatacttaaa cattgtgcaa       840
     tatatgtgat aagaccactc tccatattaa taaacatgtc gatggaggaa ggaatattcc       900
     cagcatgttt gaaaaagagc aaggtggttc caatatacaa gggtggtaat agaagagaac       960
     cagtaaatta caggccagtc actgttacat cggttttgtc taaagttatg gagacaataa      1020
     taaaggacag aataattaat ttcattgcca aaaataatat attaagcaat gatcaacatg      1080
     gttttaggag gggcagatct actatgacag caatcaatga gtttgtaaca aatgtaatta      1140
     cagcactgga taagaaagat aaagtctgtg gactcttcct ggatctctcc aaggcttttg      1200
     actgtgtgtc acacaagctg ctgttagaaa aacttgaaag ttatgggata aggggaaaag      1260
     catcagatat cataagatct ttccttcaaa atagaataca atgtgtaaca gtaaaacata      1320
     aaaaccaaaa caaagttttt acagtttcct cgggctttca agaagttaaa tgtggtgtga      1380
     cacaggggcg gtactgggcc caatactgtt catattatat acaaacatat gacactgtca      1440
     gtcgaagata gggtaataat gtatgcggat gatacatcca tcatatcaag cagtagtaca      1500
     acagatgaaa tgtgtgcaca aatgacacag agcttggaaa atgcagataa atatttcaga      1560
     agaaacaacc tgtttataaa tgacagtaaa actaagtaca tgcagatcca ggctataaaa      1620
     acagctacaa ctcaaaactt aagtctcaag ttgggtgact cactgctgga ggaggttgct      1680
     agttacaaat ttttaggtgt gsaaatagat aaatatatga cttgggaaca tcacatacag      1740
     aaaatatgct caaaaataag ttcaaatgta tttttaatga gaaaaatgtc caccacagtg      1800
     aacaaagata cattgctgaa aatgtactac gggttgatct tcccgtatat atcatactgc      1860
     attgtgatat ggggaggtgc tgcagatgtg catatcagaa gacttttgat actgcaaaag      1920
     aaggccatta gatgtatcac tggaatcccg tcagggcaat cctgcagaaa caaatttacg      1980
     gaactgaata taatgacagt gccatcatta tacatttatg aaaccataat gttcgtaaag      2040
     ttaaactgca gtgcaacatt aaataggaac atccatgaat ataatacaag gaaaagagat      2100
     gattaccaca tagaaagtaa acggttacaa ttaagtgaca aagatccaat aaacgctggt      2160
     aaaattctat acaacaagtt gccacagcgc atcaaaaata tcaacaaaat acaggacttt      2220
     agaaaaaaaa ttaaagtcat atctaattct ggccagtcca tatagtgtta aggaatacat      2280
     agaaaattgt caggtagact accagatggt aggacagtga aattaaatag cgtgtggaac      2340
     tgtcatgtaa tcaatcgtta attataggat gtactttcat aacagtaaat tataaaatat      2400
     atattattaa actaaacaaa gaatatatat aaaatatggt gcaataagga tgacttgtga      2460
     acttaagaaa tactatgtaa gtttaattgt actggagagc cctatgtatt gtattgaatg      2520
     agtataacaa attgtaacct ctgtacataa tatactttat ktttcagtaa tgtgtaaata      2580
     tgcaagtact gagtatgctc tgtgttagta tgaaaagatt gtagcctgat ttgtacaatg      2640
     atgcaatgta atgaatataa aatatgtaat gtgggggatg ccttatgcag ctagtaagct      2700
     atccaagggc taataaataa ataa                                             2724
//
ID   Daphne-69_LMi repbase;    DNA;    INV; 2772 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-69_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2772
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 121-121 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2772 BP; 979 A; 449 C; 510 G; 834 T; 0 other;
     gtcttcattg acaagtctag gttcaggagc ttgacagtca gtcaagtctt aaatggcttg        60
     tcagaccatg atgctgtact tcttaccatc ccacagtttg atcttaagat aaaaccaaaa       120
     cctgtctgga aatttgtgag agcaattaat acaaagaaac aatggagaca ttcaggcaga       180
     agctaaagct tctagactgg tctgaagtat ataattcagc agatgtcaac acaaaattta       240
     atgtatttat taatgaagca acaagtcttt ttgaggaagt gtttccaaag aaaagagtaa       300
     aagtaaacca gtgtaacgct acattcaagc catggatcac acagggcata aaaaattcat       360
     gcaaaacaaa aagagaattg tatatgacag ccagactgac taacaataca gtaatgatga       420
     ggcagtgtaa agtgtattcc aagatattga ggaaggtgat acagaagtcc aaaaacatgt       480
     acttaaaaga ggaaattgat aaatctgaga acaaaatgaa aactttggaa atatgtgaaa       540
     agtgagacag gaaaagttca gttgccaaaa gttgattagt ttaagaagtg agaatgggaa       600
     tacagtctaa tattttcaac aatcattttt aacagtcact gacaaatgga tgccaggctc       660
     tgtaaaaaat ctacaattac atgcatgaca cattaaccaa caaaataatg agatgtgtgt       720
     tcgaaaaacg acagtgaaag aaatagaaaa aataattctg tctttaaaaa gtaaaaattc       780
     gctggagtgg ataacatctc cagcaaatta ttgagatatt gctgtagaaa aataagtaca       840
     gtcctctgcc acatttgtaa ttcatcactg gaggaaggca catttcccag gttaaaattt       900
     gcacttgtgc ggccaattta caaaaaggga gaaagttcga tgctacaaat tatagaccaa       960
     tttcattact ctcagttttt tctaaggtac ttgagaaatt gatgtatagc agaatagatg      1020
     agcatcttag taaatacaac atactaagca atagccagtt tggctttcgg aagggagtat      1080
     caactgagga tgcaatacat gcacttgttg acaatgtttt ggagtctata aatgatagta      1140
     tgatgacaat tggaatattt tgcgacctgt caaaagcttt tgacagtgta agtcaccaaa      1200
     ttctactgaa taaagccaag accctaggaa tgagtggaac agtaggcaag tggctcgaat      1260
     cctacctttg tggtagaaaa cagaaagtac tcattgaagg actgcatggt ggcaatgtat      1320
     cttcaaactg gggatccatt gccactggag taccccaagg ctcggtactg ggcccactgc      1380
     tttttctatt atttataaat gatttaccct ttgcacagaa catggaaaaa ttaccatgtt      1440
     tgctgatgac accaccatat cagttaataa tccctcaagt aatgtgtcaa atgaggtagt      1500
     taataaggat tttactgatg tgataaactg gtttcaaact aatggtctat ctatcaacct      1560
     aaaaagacta attatattaa tttttcctgt aatgcaaatg tttccaatga aatcagccta      1620
     atagtgggtg aacaaaaatt ttaaaggtag agtcctccaa atttttgggt ctgcatatag      1680
     acagcaaact gaagtggcac caccatattc tagaactgtg taaaagatta agctcggcaa      1740
     catttgcctt gagaatcata tcagacagca gagagatgag cacaataaaa acagcatact      1800
     ttggctactt ccatccactt atggcctatg gaataatatt ctggagaaat caatctatag      1860
     caataaaggt gttctatgcc cagaagcgag ctataagaat tatgtgtgga gtacatccaa      1920
     ggcactcgtg cagaaatctg tttagagatc tccaaatttt cacgacaaca gctcaatata      1980
     ttttctcact gatgtgcttt gtttcaaaaa atagcagtct attcaaaatc aatagtttgt      2040
     accataatta taacacctgt aggaaacttg atattcatta tgacctgaaa aagaagacta      2100
     tggtgcagaa gggggttctg tacagtggca ccaagatttt taatgccctc ccaccacaaa      2160
     ttaaagaact ggtgggtaac actccaaagt ttaaagaaaa gctaaggcag ttccttctag      2220
     atggatcttt ttatagcata gatgaatttt ttaaccaaaa tgcctaatat cttgcaagta      2280
     tgcctaaatc tattcttgtt gcccttatgg tggattcaac attctttgtt tatgtaagag      2340
     aaatttaaac tcaaatttat gtatttctgt atcttgtaag tatacttaaa tttatttttg      2400
     tggcctctat gggggattga acattctttg attatgtaag tgtaatttga actcaaattg      2460
     tgtatatctg tatcttgtaa gaatgcttaa atctatttgt ggcccttacg gtggactcaa      2520
     cattctttgc ttatgtaagt gtaatttaat ctagaaatgt atgtatatct gtatactcct      2580
     tctgaagtct agtaacatat atttaatgtt atgtgatgaa ctaatcaact tctgttattt      2640
     atatgataag aacatagtac ttgtactaca caacagtgta aaaaattttg acacattcta      2700
     catttttttt tatattacat ccagagacat gttctcatgt ggatctatgg aacacgaaat      2760
     aaataaataa aa                                                          2772
//
ID   Daphne-6_HMM repbase;    DNA;    INV; 2857 BP.
XX
AC   .
XX
DT   15-FEB-2013 (Rel. 19.10, Created)
DT   15-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-6_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2857
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2789-2789 (2014).
XX
DR   [2] (Consensus)
XX
CC   Only 3 sequences. ~99% identical to consensus. 5' is uncertain.
CC   3' is ended with (TTTCA)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2499
FT                 /product="Daphne-6_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="XLCELDSVLAGCISSKNIVVIGDMNIDITPNNLTQQA
FT                 HDYLNLLASHGLIPSHKLPTRDNTCLDHVMTKSDEKINTLVIDVDITDHKP
FT                 TVANIEWGELNPNPKXYRTIINYPAVVNEILSVDFEGIMIIKSANCAAESL
FT                 VSTVGCIIKKHSKTVQINSKYRTLKPWITNGLLRCIRNRNKLSRKTKAHPE
FT                 NYILKITYLRYRNFCNKLLKNLKRNYEKMELYNAQNNPKTTWKVIKNLTST
FT                 HKNVSQPLELLHIASDSKTSINNVNNFFANVGRRLAETFKPIQSSPNATPV
FT                 NASYAEPLHSFVLLPTDEAEVKSTILGLRMDAAVGWDGISARLLRDCLPKL
FT                 VPVITHICNSAISSGCFPNVFKKAVVHPIHKSGDKYSVDNYRPISILPIMS
FT                 KILEKIINKRLMHYLEAQNVLASNQYGFRRGKSTEDAIASFVDHVVASLDK
FT                 GTKCMGVFIDLSKAFDTVFIPCLMSKLNTIGVRGIPYKMLEDYISDRSQCV
FT                 KINNLISDSQKINFGVPQGSILGPTLFLIYINDLCKLSLTNCSIFTYADDT
FT                 ALLIKGNNWSEVFMHAENALRSVTSWFSDNLLTINLAKTVYMPFSLKPNTL
FT                 CPADTLLLKVHAANCPNNASAAICKCPLLRKTNTVRYLGVLIDMSLNWKPH
FT                 IDSLTARVRKILFIFKKLRPSADYPVLKIVYYALCQSIITYCISIWGAASK
FT                 SLLLPLERAQRAVLKVMTFKPFRYPTSQLYIDCAVLTVRQLFVLHTILRVH
FT                 RKKEYNKNNTTSRRSYNVCPTYKCNTATAQRHYHFIGGHLYNKINKICNIF
FT                 PLSLHLCKAKVSLFLQEQEYSETESFIKIST"
XX
SQ   Sequence 2857 BP; 918 A; 553 C; 473 G; 901 T; 12 other;
     ttwttatgtg agttggatag cgttctggct ggttgtatat catcaaaaaa tattgtcgtt        60
     atwggggaca tgaatatcga tattaccccc aataatctta cacaacaagc ccacgactat       120
     cttaatctac tagcttcgca tggcttgatt ccctcgcata aacttcctac acgtgacaat       180
     acatgtctag atcatgtaat gacaaagtct gatgaaaaaa taaatacatt ggttattgac       240
     gtcgacatca cagatcataa gcctacagtt gccaacattg agtggggtga gttaaatcct       300
     aaccctaaat twtaccgtac aattattaat tatcctgctg tcgtcaatga aatcctttct       360
     gtcgactttg aaggaatcat gataattaaa agtgcaaatt gcgcagcaga atcactcgtt       420
     tctactgtcg gctgtatcat taagaagcat tctaaaactg ttcaaatcaa ttccaaatat       480
     agaacactaa aaccatggat aactaatggt ctcctacggt gtatacgtaa cagaaataaa       540
     ttatctcgta aaacaaaggc acatcctgaa aattatatac ttaaaattac atatttaagg       600
     tacagaaatt tttgcaacaa acttcttaaa aatcttaaga ggaactatga gaaaatggaa       660
     ctctataatg ctcaaaataa ccctaagacc acatggaagg tcattaaaaa tttaacatct       720
     acacataaga atgtttccca acccctagaa ctcttacata ttgcctccga tagtaaaact       780
     tcgatcaata acgttaataa cttctttgca aatgtaggca ggagattggc ggaaacattc       840
     aaacctatac agagttcacc aaatgcgacc cctgttaacg catcgtacgc tgaaccttta       900
     cattcgtttg ttttattacc cacagatgaa gccgaggtaa aaagtactat tttgggactg       960
     cgtatggatg cagccgttgg ctgggacggg atttcagcga ggcttttaag ggattgtcta      1020
     cctaaactag tacctgtaat aacacacatc tgcaattctg ctatatcctc tggatgtttt      1080
     ccgaatgtat tcaaaaaggc agtcgttcat ccaattcaca agagtgggga taaatacagt      1140
     gtcgataatt atagaccgat atctatcctg ccaatcatgt ctaaaattct agaaaaaatt      1200
     atcaacaaac gcttgatgca ctatcttgaa gcacaaaatg tcttagcatc caaccagtat      1260
     ggttttagac gtggtaagtc tactgaagat gctattgctt cgtttgttga ccatgtagtt      1320
     gctagcttgg ataaaggcac gaaatgcatg ggagtattta ttgacctttc taaggccttc      1380
     gacactgttt ttatcccttg ccttatgtct aaattgaata ccattggtgt tcgaggtatt      1440
     ccttataaaa tgctggagga ctatattagc gatcggagtc agtgcgttaa aataaataac      1500
     ctaataagtg acagccagaa gataaatttc ggtgtacccc aggggtcaat tttgggtcca      1560
     acgttatttt tgatatatat taacgactta tgtaaactat cgcttaccaa ttgctcaata      1620
     tttacttacg ccgatgacac ggcattactc ataaaaggca ataattggtc agaggtattt      1680
     atgcacgcag agaatgcact taggtctgtg acaagttggt tttctgataa tttactgact      1740
     attaacctag ctaaaacagt gtacatgcct ttctctttga aaccaaatac cttatgtcca      1800
     gctgatactc tccttttaaa agttcatgcc gcaaattgcc ctaataacgc ctccgctgca      1860
     atatgtaaat gtccgctgct tagaaaaact aataccgtaa ggtaccttgg tgtattaatt      1920
     gatatgtccc taaactggaa gcctcacatt gatagcctaa ctgctagagt acgtaaaatc      1980
     ctttttatct ttaaaaaact gagaccatct gcagattacc ctgttttaaa gatagtttat      2040
     tatgccctat gccagtctat cattacatat tgcatttcta tttggggtgc agcatcaaag      2100
     tctctactgc tacccctgga acgggcccag agggctgtcc taaaagtcat gaccttcaaa      2160
     ccttttagat atcctacatc tcagctatac atagactgcg cagttttaac ggtgagacag      2220
     ctttttgtcc tccataccat acttcgtgta cataggaaaa aggaatacaa taaaaataac      2280
     acaacatctc gtcggtcata taatgtttgc cccacttaca aatgtaatac tgccactgcc      2340
     caacgacatt atcattttat cggtggtcat ctatataata aaattaataa aatatgcaac      2400
     atatttcctc tttcccttca tctatgcaag gcaaaagtta gtttattttt acaggagcag      2460
     gaatacagtg agacagagag ttttataaaa ataagtacat agaataagat atgttttcaa      2520
     ttgatgaggt ttttactaca aatgtgcatc cagttttctt acttttatta ttattatttw      2580
     gttttttttt cttacatttg tattcwgttt ttcatacaat aatkaaccaa ccagamacaa      2640
     gatgtttgat kgwtctaccg atttctagat cacttaaaaa tttgtaagag cactgstacc      2700
     cataacacaa gttaaatctt acaatgggta ccagagttca twaaaccaga gtgaaattat      2760
     ttwattgaat gctgtaaata ggattgattc attgtatctg gtgactgtat tcatacattt      2820
     ttggcaataa actttcattt catttcattt catttca                               2857
//
ID   Daphne-6_LMi repbase;    DNA;    INV; 3745 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3745
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3120-3120 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(426..947,989..1714,1718..1993,2020..3453,
FT                 3438..3569)
FT                 /product="Daphne-6_LMi_1p"
FT                 /translation="KEQKISKGAQWCPSAINRPIQDQDRSSGTRSKKSNAT
FT                 PHPARPQQKGERKTSKPQILEPSADLVVFHQNVQSLTNKIDEFQIMLENEL
FT                 KKVSVLCLTEHWLQDDTLNMVHFPNFILGSHFCRKKRYASPQHRKQSFVVA
FT                 DLHKSIHLHPSFPEAFQRKIPWKYQDLSYCMKTYLNXECVLHKLSKKNRHI
FT                 IICGDFNIDFSVGLETKPKTDILNLLLTFNMTPTIQTPTCVTKTSATTIDQ
FT                 IFASVPMEYKARTLCTGFGDHTAQEITIKMDLPLHCKTSLLTITRSFNLQN
FT                 TNTFTQYLTNESWEEVYSCRDTNEKFEKFLSIFQHYFELCFPLKKRKIKKS
FT                 NIKSSWITPGILTSLREKRVLHTISKQTKTTPEFDTYFKRYKQILNKVIKK
FT                 SKKLTNFSYIEKPQIKCNVDYCERNRQNTGHTHSNINLLENGEEITDPHRV
FT                 ADLFNVYFTEIASNLIDKQQKPASENKNQQKLFIRKNNFPIPNRRKGSTEY
FT                 YKRIKTKIFIRHKCATVVTKPLTHLCNSSLSNGVFPEKLKLAKVKPLFKKG
FT                 DKRNEKNYRPISLLPGFSKILEKVFYRRLISFIEENNFLSNTQHGFRKQKS
FT                 TETAIFDFVNEALSTIDQKEHVSALFLDLTKAFDMIDHNLLLKKLEYVGIR
FT                 GLAHKWVTSYLKNRAQIVEIAHQEGSNIYTYQSERKDIKYGVPQGSILGPV
FT                 LFLIFINDLETSSSSQKYIKFADDTNILIKGKTAAELQHEIQNCTSHIEEW
FT                 FTTNNLVINIEKTVTMHLHTIQNKHPLTPTIKLFNKKLETVNSTKFLGISI
FT                 QDDMKWDTHIKYISKKLNTICYGVRILARCTTKETLKNVYYAQAESLLRYG
FT                 LIFXGNSPESRYCFVAQKRIIRSIENATPRKSCKPLFKALQILPLPCLYIL
FT                 EIVTYIKKISVAQNNLVYTNKSVHTHDTRQTLDLHSEHLRTTLRQNGPLQM
FT                 GEKIVQQTSSPYQNNQRTPEVQIGCKKLFTRKIIYKINVITLSVNICQLNL
FT                 MSCFLTYNYCNYCHLLYDVDCIII"
XX
SQ   Sequence 3745 BP; 1492 A; 687 C; 591 G; 972 T; 3 other;
     aatatgataa acaaattaga aaacacaaat gtaacaatag taaatcaacc tcgcgacatg        60
     acgcgtaaat aaattaatag aaaaagtaaa caaagaaatt gatgactatg caaaaaattt       120
     cggtatgtaa acttgattga tgtaagcaag ttagagagat ctatgcatac cagtcatggt       180
     cttcatctca attacagtgg gaaacagttc ttagctgaag aaactgtaat tcagtaaaat       240
     ttaaccacaa gaggtttaat ctggaagctg tacaaagtac tttggacaaa tgggtagtaa       300
     ggaaggacca ggtctcccag ttgtcaaata cgtggcccca gtgactgaag aaactaatgc       360
     tgctgcaaga cctgaagtcc tgaagacgcc agcccaacac caaaatggtt ttctagacaa       420
     aataaaagga acaaaaaatc tccaagggtg ctcagtggtg ccccagtgca ataaacaggc       480
     ctattcaaga tcaggatcgt tcaagtggga ccagaagcaa gaaatcaaac gcaacaccac       540
     atccagccag acctcagcag aaaggagaga gaaaaacaag taagccccaa attctagaac       600
     caagtgccga tcttgtagtg ttccaccaaa atgtgcaatc attaacgaac aaaattgatg       660
     aattccaaat tatgttagaa aatgaactta aaaaagtttc agtcctgtgt ctaactgaac       720
     actggttaca ggatgacacc ctaaatatgg tacatttccc aaactttata ctgggtagtc       780
     acttctgtag gaaaaaaagg tatgcatcac ctcaacatag aaaacagagt tttgtggtag       840
     ctgatctaca taaaagtatt catttgcacc catcgttccc agaagcgttc cagagaaaaa       900
     tcccttggaa atatcaggac ttgagttatt gcatgaaaac atatctataa tttgtttgtc       960
     tggggatagt acatgaaact ttgcttaaaa tttwgaatgt gtacttcaca aattgtcaaa      1020
     aaagaataga catataatta tttgcggaga ttttaatatt gacttttctg taggccttga      1080
     aactaagcca aaaactgaca tactgaacct cctcctaacg tttaacatga cacccacaat      1140
     acagacacca acatgcgtga caaaaacttc agccacaaca atagatcaaa tatttgctag      1200
     tgtacccatg gaatataaag caagaacctt gtgcacaggc tttggagatc atacagcaca      1260
     agaaataaca ataaaaatgg atctccctct acactgtaaa acctcattac taaccatcac      1320
     aaggagcttt aatttacaaa acacaaacac tttcactcag tacttaacaa atgagtcatg      1380
     ggaagaagtt tatagctgca gggacacaaa tgaaaagttt gaaaaattct taagtatctt      1440
     tcagcactat tttgaattat gcttcccact caagaaaaga aaaatcaaga aaagcaacat      1500
     aaaaagtagt tggatcacac caggcatact aacatcactt agggagaaaa gggtccttca      1560
     tacaatatct aagcaaacta aaaccactcc agaatttgat acttatttta aacgatacaa      1620
     acagatttta aataaagtta ttaaaaaatc aaagaaacta acaaatttca gctacataga      1680
     aaagccacaa ataaaatgca atgtggacta ttgttaagag agaaacaggc aaaacacagg      1740
     acacacacac agtaatatta atctgcttga aaatggagag gaaattactg acccacacag      1800
     agtagctgat ttatttaatg tctacttcac agaaatagca agcaatctaa tagataaaca      1860
     acaaaaacca gcttctgaaa acaaaaacca acaaaaacta ttcatcagga aaaacaattt      1920
     tcctataccc aacagacgaa aaggaagtac tgaatattat aaaagaatta aaaccaaaat      1980
     tttcatcagg cattgataat attcccgatt acctattaaa aatgtgctac agtagtaaca      2040
     aagcccctaa ctcatctttg caactcctcg ttgtcaaatg gtgtttttcc tgaaaaacta      2100
     aaattggcta aagtaaaacc tctgttcaaa aagggagaca aaagaaatga aaaaaactac      2160
     agaccaatat ccttgctgcc tgggttctct aaaatattag aaaaagtttt ttacagaaga      2220
     ctcattagtt tcatagagga aaataatttt ttatcaaata ctcaacatgg ttttagaaaa      2280
     caaaagtcaa cagaaacagc catttttgat tttgtaaatg aagctttgtc tacaatagac      2340
     cagaaagaac atgtatcagc attattttta gacctcacaa aggcttttga tatgatagac      2400
     cacaacttac tacttaaaaa attagaatat gtaggcatca ggggtttggc acataaatgg      2460
     gtaacatcgt accttaaaaa cagagcgcaa atagtagaaa ttgcacatca ggaaggaagt      2520
     aatatttata cctaccaatc tgaaagaaag gacattaaat acggtgtgcc tcaaggttct      2580
     atcttgggac cagtgctgtt cctgatcttt attaatgacc tagagacatc cagcagctcc      2640
     cagaaatata taaaatttgc agatgataca aatatactaa taaaaggtaa aacggctgca      2700
     gaactacaac atgaaataca gaattgcact tcacacattg aagaatggtt caccactaac      2760
     aatcttgtta ttaatataga gaaaacagtm acaatgcacc tccataccat acaaaataaa      2820
     catcctctaa cccccactat aaaactcttt aataaaaaat tagaaacagt aaactcaacc      2880
     aaatttctag gcatatcaat tcaagatgat atgaaatggg acacacacat aaaatacatt      2940
     agcaagaagt tgaacacaat atgctatggt gtaaggatac ttgctaggtg tacgacaaaa      3000
     gaaacattaa aaaatgtgta ttatgcccaa gcagagtcac tgctgcgata tgggttaatt      3060
     tttkggggga actcaccaga aagcagatac tgttttgtag cacaaaagag gatcatacgg      3120
     tcaattgaaa atgcaacacc caggaaatct tgcaaaccgc tttttaaagc gctgcaaata      3180
     ctaccattgc catgtctgta catccttgag atagttactt atattaagaa gatttcagta      3240
     gcacaaaaca atttagtata tacaaacaaa tcagttcaca cacatgacac aagacaaaca      3300
     cttgaccttc atagtgagca cctacgaaca actctccgac aaaatggacc tcttcaaatg      3360
     ggggaaaaaa ttgtacaaca aacttcctca ccatatcaaa acaatcaaag aacaccagaa      3420
     gttcaaattg gctgtaaaaa attatttaca agataaatgt tattacactg tcagtgaata      3480
     tctgtcaact taacttaatg tcatgttttc tcacatataa ctactgtaac tattgtcacc      3540
     tattgtatga tgtcgattgt attattattt agacatgcta aaaactactt aataaatgta      3600
     atatagtaat gactcatttt tgttgtgatg tgccatatat actatgtgta tatagaaatc      3660
     tgtatactta tgtaaaaaac ctgtaagcaa tatcctatat caataatttg atgaagtgga      3720
     tgcttaaata aataaataaa taaaa                                            3745
//
ID   Daphne-70_LMi repbase;    DNA;    INV; 2715 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-70_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2715
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 122-122 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2715 BP; 1033 A; 447 C; 440 G; 794 T; 1 other;
     ccaatgttta ttagaaaaaa attcagaaag aaagtaagaa aaaaatatga ttgcagcaga        60
     tttcaacatg gatgtgttag tagaaagcag tgatgccaca aagtttcatg acatgatcca       120
     aaagtctggt ttcatattaa actttcatga aggtaccaga ataaccagta catctgtgac       180
     ttgtattgat aacataatta caaattatca gtttcaaaat gcaaatcagt ctgcttggct       240
     taaattmtga tcattcagct cttttcattg agcttccaaa atctgataaa cctaagcctc       300
     cagaaatgtg tataaaaaga aatttcagca aaagtaacat agattatttt cgcagtaaac       360
     ttagtgctat aagttggcct gtaaacaact acagtttgtg caacacaaac tataataatt       420
     tcttaagctg ttcctaaatg tattcgagga atcttttccc agaatttcaa agaaaggaag       480
     cagtaaactg aagtggatta cagcaggaat aaaaatttct agtgctagaa aaagacagct       540
     tcacagtgaa ctaaaatcaa ataaaaatcc tgattttgta aaatatgtta aactctataa       600
     agctatattc aggaaagttg tactggctgc taaaaaaatg gcaaataata cattcatctt       660
     ccaacataaa aataagacca aagcagtgtg gtcagttgtc caatcagaat taggaactaa       720
     aatcaattgc caagagatac agaaaattag atctgataat gatattgtag tacctgttca       780
     aatgtgaatt gtttcaatat tattttttaa atgttacaag atcggatata gatatggcag       840
     cttatcaaaa caatactaat ctcataaatc tggaaaacaa tgaaagagaa ctattcaaac       900
     aatttgaaag aatcacccgt ggagatgtgg aaaaagaaat gacgttaaaa aacaaaaatt       960
     catctggctg ggatgaaatc cccacacctg ttataaagtg tgttatgatc ttatttcgca      1020
     accactgcaa ttattataaa tcaatccttt gagcagggat gttttccaga taagttgaag      1080
     tatgccgaga taaagccact attcaaaaag ggatcaactg aagatatggg aaattaccgc      1140
     cctatctctc ttctgccgat tttgtaaatt gtttgaaaag gttgcagcaa aacaagttca      1200
     gaaatttctt actcaaaatg acataatttt taaaaaccag tttggatttc aaccagaaaa      1260
     aagcactgta aatgccatca atgactttac ccaaaagata tgctctgcat tagataaagg      1320
     caggaagatt acagggattt tctgtgatct gactaaagcc ttcgattcag tgaaccactc      1380
     cttactttta cacaaactac agatgtatgg aattcgggat actgttctga aatggttcaa      1440
     ctcctacctc acgggtagga aacaaagggt aattgttact tcaaactcaa taaattactc      1500
     ctcagaatgg aaaactgttt ctcagggagt gccacaaggt tccgtaatgg gtccctacct      1560
     gttccttctt tatataaacg acttaccact agctgttgac gtaaacttag ttctatttgc      1620
     cgatgataca tcagttctaa ttgaaaatga ggtgcctgaa acaattccag aaagtgtgca      1680
     aaaaactcta gaaaaactgg aaacctggtt ccatcaaaat gggctaaaat taaatgtaac      1740
     taaaaccaaa atgactcagt ttgaagccaa aacagtaaaa aggagtgaaa tgaaaataac      1800
     ttgcaataat caagaaatga cagaatcaaa tgatgtaaag ttcttaggcc tacatctcga      1860
     taaaaatcta aattggaagg cacacattga ttacctagca aataaattaa atagcttggc      1920
     atttgcaatg aatattctgt caggcaccac aaacatagaa accagaaaga cagtctacca      1980
     cagctacttt gaatcagtta tccgttatgg tataatcttt tggggaaatt caacaaatgt      2040
     taaaagaatc ctcatattac aaaagaaaat aattaggaat atgtgtattg ccaaaccaag      2100
     ggagtcttgt cggccactat taaaaaattt aaaaattctg tctattccat ccctctatat      2160
     atatgaggtg ttgattttct tgtacaaaca ccaaaatacg ttagacattt tccgattcga      2220
     ccacaattat agcactcgcc acaaagaaaa ttttaaactc ccaacacacc ggctaaaact      2280
     ttatgcacaa acaccagagt acatgggact aaaaatatac aacaaaataa aggggagcaa      2340
     attatttaac atggagcttg gttcactgaa gcgactgctt ttcaatattc tggtggaaaa      2400
     gtgctattac tctgtcgagg tattttttga tgacaaattc actttttgag acagggcatt      2460
     acatatttat aatatttttg cattaagaag tataacgaat acctttgtat aaagaagtat      2520
     aatatctttg tattgatata tatttatgga taatatctat gtattaagaa ctatagtgta      2580
     actgcaattt atatgtatat aaaatgtaaa ctaagtgaat cataaatcat attgtaaatt      2640
     ttgacatgtc tccagtacaa caaatcaaat gatttgaaaa ctgtatgtta cgagatgaat      2700
     aaatcacatt tcaca                                                       2715
//
ID   Daphne-71_LMi repbase;    DNA;    INV; 1718 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-71_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1718
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 123-123 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1718 BP; 623 A; 361 C; 240 G; 488 T; 6 other;
     gtcacaatat gatcccatat tttctattga aaaatgttca cacacattag taatcctccc        60
     acatcataaa taaataacac atccgtagca agatgtcccc atatttaaga aaggtgagaa       120
     aacagacatg gggaactaca gaccaattgc aatactatca gccttctcca aggtatttga       180
     atatgctatt gttatcagac tggagaactt cttaaacata aataatatta tttcatcctc       240
     ccaatatkgg ttccaaaaaa ataagtccac tgtcaatgcc ctgatatgam ttccttgaca       300
     gttgctcaag tttaattgac cakaaacagc cagcwatagg taaccaatca aaagcatttg       360
     acatggtaaa ccattcaatg ctcctaaaaa agcttgagca atatggaatt cgaggagtgg       420
     cccaaaactg gtttaagagc tacctggacg acagaagaca atttgttgaa attaggaact       480
     ggaagcaagg agcatcctac aggtccaatt tactcagtac aacctatggc gtcccacagg       540
     gctctattct cggtcctatc ctatttacac tttttataaa tgaccttcca gaacacattc       600
     ccaaggctaa aacattcttg tatgcagatg atacaaatat actgatatca aataacaaag       660
     acacaataca acaaatagta caggaaaata cttctcatct acagtattgg tttgagacta       720
     acaatttact tattaatgcc caaaaaagat cacagttcac actaaacaaa acaccactcc       780
     ctcaaaccct gatgtacata ttggaagaat caatgtaaga accatgcatg acaccaaatt       840
     ccttggaatg catataagca atacacttag ttggaaacta cacacagaca tggtctctaa       900
     gcagctcagc aaactctgtt tcttactaca atcaataaga gatactacct ctgcasccac       960
     tatgaagctg gtataccacg ccttatttga atccgtgatg agctacagtc tgattttctg      1020
     ggggaacagc tctgaatcca ctagtgtatt taaaatacag aagcaagcag taaggatact      1080
     ctcttttaaa aagagatatg agcactgtag gccacttttt aaacaacata aaatactacc      1140
     cctaccatgt ttgtacatac tcaacataac ctgctttata actaaacatt tacattcact      1200
     acataaaaac aatgaccgcc attcccatga tacaaggaac aaaaaccagt tgcaggtcct      1260
     accacacaac acaaaattat acgaaaacag tgtgaagtac atgggaatca aaatatacaa      1320
     tcaccttcca gaagaattca aattaatcag aaagccaacc gaaatgaaaa ctagacttac      1380
     aacatttctc ttaaaccact gtttctactc tataaaggaa ttcctcgata caaaatttta      1440
     atactatacw caactttctg tctgcttact atgtgttata tgtattatct agaatatcgt      1500
     aactgtacac actactgtcc aaattgtaag tggaagtttt tctcttaaat tgtatctact      1560
     gtatgttgta aacaacaatg taattatttt gtgctgtttt tctcttaaat tgtaacaaca      1620
     atgtaattat tttctattaa ctttgtatac acaactgact tatcccatat ctactgtaca      1680
     attcgtgtac tgtttgatca atgggatata aagaacaa                              1718
//
ID   Daphne-72_LMi repbase;    DNA;    INV; 3976 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-72_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3976
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 196-196 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(938..1357,1370..1894,1902..2360,2246..2647,
FT                 2628..3590)
FT                 /product="Daphne-72_LMi_1p"
FT                 /translation="QVTVDKHKTMGGGGSIYVSSGTELHYSVISVKDYCTD
FT                 EVLETAAMLLPXLKLIXVSVYHTPDSNIEIFVQALQKLIVHFEKWPKYRIT
FT                 IFGDINIDIRQRTLKQINLLNMLRSHDLYCINDKPTRQSACLDNVITNVLS
FT                 DTRIIQYTFLSDHNKGIWLKLKTERPLYNSNQTKYIRLLNEENVDNFRTQL
FT                 KMINWHDILLESTDVENAFTKFIATLSGTFKTCCPKVVRKTKGPAKKHNLT
FT                 SVHSWFTHDLKRLRTLLMISYDKSKNSEAERVSYIRLRNKYKAEIRLSKCK
FT                 ANDDYINSPKINVKQPGLLSRLIKSDINKINSCDVGITPDEFNSFFIKAGN
FT                 MFNASATEHNITNDNSNHRTPLLQNFETAIPIFKWKEVKVTNIKTAITKLS
FT                 HSKSEDIYDLSNFVIKKIVDEIVQPLYFLINWMFISGCFPSSLKMTVVTPL
FT                 HKKVISLLQIIIAQYLLYPYFQKWLFPLILKNDSCYSSAQKGDKSSPNNYR
FT                 PISLVPIFSKVIEICMQLQINQHLSTNNILCDSQYGFRSGLSTIKAVENIV
FT                 SFILSSFESKLSVNAMLVDLSKAFDTVSHRILLEKLYCYGFRDSELSLIRS
FT                 YLCVSGPTCVCDRKQIVQFNNMRSNVSDITQGSVLGPLLFILYVNDLPSVM
FT                 LCKSTLYADDTTFVTSGKDLVAIKQESRDHLCAASKWFQMNRLSVNHEKTV
FT                 DILFSLCIKDDDNDCSSAKLLGIHLDSKLTWKSRTESMCTKLARVIYLLGK
FT                 LRSCVSDKLLLNAYYAFFHTHLTYGVLLWGNSPGAKQVFIWQKKAIRCICG
FT                 VRNNESCRPYFKKLKIPTVVSLFILSCLIHTKENLHSHKLRQSVHHHNTRT
FT                 KQHIDITVARLKKTQDSYEYMGIKLFNMLPEEAHNVSLSKFKNTMQKWLKE
FT                 KAFYTLEEFKMCSKDDLKF"
XX
SQ   Sequence 3976 BP; 1416 A; 709 C; 694 G; 1153 T; 4 other;
     gaaacaaacc acctgatata caattttaat tgtattataa aggacctagc acatgcagat        60
     gccaacatca ctgtaattga tataaaccag ctactgcaac gagaagacta cacaaaacat       120
     gggatgcacc ttaacatgaa gaaaactgaa aatatgtagg agtattgctc ttctgctagt       180
     tgcactggaa gaagccaaca ctgataaagg tagttaatac ctcagtagat taaatcatac       240
     accgaattag cctcaggaca tgagctcaga taatagggga agtggaacca ttatccagcc       300
     cacatcatcc agaggaagaa agtcgaccaa actgtcggac acactacctg tgtcaatggc       360
     aagttgacat cccaacctat gcagatctgt taaaaacact caagcagcag aggcagtaca       420
     actcagtgct cagttagtgt gcgaaaacag tcaacagcaa tatccacctc cgcatccaca       480
     ggcgaagcca gtgagcttcc ttctcttggg gcagcaaggt gcaaaagtga aaaaaaagta       540
     cccagtccaa gtgtgaaagt gaactgtgtc ttctaagaaa agtaccagag tggagcagtg       600
     atttttttat ggctgacgtc ggggaaatca ctttgaggac acaatgggat ccagtgcgat       660
     caagaactta acacagatgt aagtacagaa tctccaagtg ataggaccac aacaaaagtg       720
     aacaaactaa tgtgttgcta cataaaaatt ccgacttccc ctttgtgaag atgattcatt       780
     actgtttata catgataata tcaggtcttt aaagaataaa gctgatgatc tcagcattct       840
     gttggagtaa acaagaatat tatattatgt attaatgaac actggctaag tgaagaccaa       900
     ctgcaawtat atgtacctcc aggttttaac ttagtaacag gttactgtag acaaacacaa       960
     aactatgggg ggggggggct caatatacgt tagtagtggc acmgaattgc attacagtgt      1020
     cattagtgtg aaagattact gcacagatga agtactggaa acagctgcaa tgttactccc      1080
     cwctttaaaa cttatawttg tttctgtgta ccatacacca gatagtaata ttgaaatatt      1140
     tgtgcaggcc ctacaaaaac taattgtaca ctttgagaaa tggcctaaat atagaatcac      1200
     aatttttggg gacataaata ttgatataag gcaaaggaca cttaaacaaa ttaatctact      1260
     caatatgtta agatcacatg atttgtactg tattaatgat aagccaacaa gacaatctgc      1320
     ctgtcttgat aatgtaatca ctaatgttct ctctgactaa tcagtatgaa ctaggattat      1380
     tcaatacaca tttttatcag accataataa gggcatttgg ttaaaactaa aaactgaaag      1440
     gcctttatac aactccaatc aaactaagta tattaggctt ctgaatgagg agaatgttga      1500
     taacttcaga acacagctaa agatgataaa ctggcatgac attcttcttg aaagtactga      1560
     tgtagaaaat gcttttacaa aatttatcgc tacactgtca ggcactttta aaacttgctg      1620
     ccctaaagta gttcggaaaa ctaagggtcc tgccaagaaa cataatctta catctgttca      1680
     tagctggttc acacatgatc taaaaaggct tagaactctg ttaatgattt cctatgataa      1740
     atcaaagaat agtgaagcag aaagagtaag ctacataagg ttaaggaata aatataaggc      1800
     agagatcagg ttaagcaagt gtaaggcaaa tgatgattat ataaacagtc ccaaaataaa      1860
     tgtaaagcag cctggactgt tgtcaagact catttaggta gaagtcagat attaacaaaa      1920
     ttaattcatg tgatgttggt atcacacctg atgaattcaa cagtttcttc ataaaagctg      1980
     ggaatatgtt taatgcgagt gcaactgaac ataacattac aaatgacaac tcaaatcata      2040
     gaacgccttt actacaaaat tttgaaactg caattcctat ctttaaatgg aaagaggtaa      2100
     aagtaaccaa cattaaaacc gcaataacaa aattaagtca ctcaaaatca gaagatattt      2160
     atgatctctc taattttgtc ataaaaaaaa ttgtggatga aatagtacaa ccactatatt      2220
     ttcttataaa ctggatgttt attagtggct gtttcccctc atccttaaaa atgacagttg      2280
     ttactcctct gcacaaaaag gtgataagtc ttctccaaat aattatcgcc caatatctct      2340
     tgtacccata ttttcaaaag tgatagaaat ttgcatgcag ctccaaatta accaacacct      2400
     ttccacaaat aatattctat gtgactcaca gtatggcttc aggtctggct tgtcaacaat      2460
     aaaagcagtt gaaaatattg tttcatttat actgtcatca tttgaatcta aattatctgt      2520
     caatgctatg cttgtggacc tcagcaaagc atttgacact gtcagccaca gaattctgct      2580
     agagaaactc tactgctatg gattcagaga ctcagaacta tctctgatca ggtcctacct      2640
     gtgtgtgtga cagaaaacaa attgtgcagt ttaacaacat gagatctaat gtctcagata      2700
     tcacacaggg ttccgtgctc ggcccccttc tcttcatatt atatgtaaat gacttgccca      2760
     gtgttatgtt atgtaaatcc acactttatg cagatgatac aacttttgtt acttctggaa      2820
     aagacttggt agcaataaag caagaaagca gggatcatct ctgtgcagcc agtaagtggt      2880
     tccaaatgaa tagattgagt gttaatcatg aaaaaactgt agacattctc ttcagtttgt      2940
     gtattaaaga tgatgacaat gattgttcct cagctaaact tcttgggata catctggact      3000
     ctaaattaac atggaaaagt cgtactgaga gtatgtgtac taagttagca cgtgttatat      3060
     atttattagg taaactaagg tcctgtgtta gtgataaact attgcttaat gcgtactatg      3120
     ccttttttca cacccacttg acatatggtg ttttactatg gggaaactcc ccaggagcta      3180
     aacaagtttt catttggcaa aagaaggcaa tcagatgcat ctgtggagtc cggaataatg      3240
     agtcttgtag accatatttc aaaaaactaa aaataccaac agttgtgtcc ctctttatat      3300
     taagttgtct aatacataca aaagaaaatc tacacagtca caaactacga cagtctgtcc      3360
     atcaccataa cacacgcaca aaacagcata ttgacatcac agttgctaga cttaagaaga      3420
     cacaggatag ttatgagtac atggggataa aactatttaa catgttgcca gaagaagcac      3480
     acaatgtgtc actgagtaag tttaaaaaca caatgcagaa atggcttaaa gagaaagcat      3540
     tttatacact agaagaattt aaaatgtgct ctaaagatga tcttaagttc tgacatagtt      3600
     ccaatagcat aaatcttagc aaattaaata ataataaaaa agctgaagta atttctgatg      3660
     gaccaattag gtcaaactta tatgtgtaaa attgtatcac tatgtcaaag tgtgttaata      3720
     atatttgcaa aactgtatta atcctaatat tgtattaatc ttgcaacatt ttggccctat      3780
     tacttatctg taacgttaat ttacctgtgt tgtaccagtt acacattgta ccatatttta      3840
     tgttattctc ttatatatga tttattatta ttattatttt tgaaagctat gagtgatact      3900
     gaatagaatc ctttgtacat acccccatga tgacatcaat tgcatgcaaa tgcttaaaga      3960
     tgaataaata aataaa                                                      3976
//
ID   Daphne-73_LMi repbase;    DNA;    INV; 2684 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-73_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2684
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 124-124 (2015).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 2684 BP; 908 A; 492 C; 422 G; 862 T; 0 other;
     tttggccaat tggtctctaa acaaatttaa agctgcagag cttcattaat ttcttagctg        60
     ataattataa gactgactta catttcatga atcatacact tggtgctaca gttaattggc       120
     ccacagagtt acagaaaatt ctaagagcct tttagacaat atttttgttt gtaagaatat       180
     agtcaacagg tgagtgtaag gaagtcatgt tggtgtgtct gaccatgatg gcaatactta       240
     aagtcagtga cataaattta tgcaacaaaa tctccccacc ttagtccttt agatgtataa       300
     atacaaaaac tctttctact tttaattaca acttatcaca ggtagactgg gacttgtgca       360
     tactgcagta gaaaagaaaa actgtcagga agaatactgg ggtctcatcc agtaaacctg       420
     gattacagaa ggtatcaaaa cttcttgcag gacaaagagg gatttacatg tctcactcag       480
     agtatcaaat gatccccttg caagatctca ttataaacta tactgtaaga ttttaaaaag       540
     ggtgataaac aaatccaaaa gcttatatat taaatctgaa attgaaaaat ccaacaacaa       600
     aataaaaact gtttggaatg ttataaagag agagtgtggc aagaccaata aaactgttaa       660
     taccatagaa attaatcata atgacaaggt tatccataat ccagtaacaa tatctaatat       720
     atttaacaat cacttcttaa ctgcatcaga acatgtaggt tgtaaaggtt ccttgaatgc       780
     tgctatgtat ttattacaaa gagcaatcct tatatgacca ttatagctcc agtcactatt       840
     aatgaagtaa gaataccatc aaggccttga aaaataaaaa ttccacaggt actgacaaca       900
     tttcatctaa agttctaagc actgtagtga caatatatgt caaatcctgt gtcacatttt       960
     tatgaatcta tgcagcaagg tgttgtccca gagattaaaa cttgccattg tgaaaccact      1020
     ctttaagaag ggtgacaaaa ccaatgttcc aactaccgcc caatatctct gctcagtagc      1080
     ttctcaaaag tattagagaa actaatgtat aaaagaatta tagaccatct caacatcctc      1140
     aatagaaacc agtttggatt tcagaaaggt agatcaacag agcaagctat tttttctctt      1200
     actaatgaaa ttttgatcaa taaataacaa aatatcacct attggatatt ctgtgacctg      1260
     tcaaaggcct tcgattgtgt agaccacaac attctcttac agaaggccaa tttttatggc      1320
     ttgaggggta ggtttggaaa gtggattgag tcttatttac aaaataggaa acagaaggtg      1380
     tacttaatgg tgctgatggc tgtcctgttt catctgactg gggcttatta aagtgtggag      1440
     tgccacaagg gtccattttg ggacctctgt tgttccttat cttcgtcaat gatctcccac      1500
     tgtgcacaaa caccgacagc aaatttactc tttttgcaga tgacacaact attctgcttg      1560
     aaggcgtaca aacagcgaaa tagaaaacaa atgtaaatct gtacttgttg atgttctaca      1620
     ctggtttaag tccaatggac tgaccctgaa tattgaaaaa acccaatata tacaatttca      1680
     tacagcccag caagagaaca aagtattcca cttgagctgt ggtaaccaaa ataggtatca      1740
     cagtgtgatt tttctaagtt cttgggcatt ctaattgatg ataaattgaa ctggtctgag      1800
     catatagtag atctccataa aagactcagt gcagcaactt atgccctccg cgtaatcacc      1860
     cctattagtg acatagatac taccaaagct gcatattttg gttattttca ctccatcatg      1920
     tcctatggca taatattttg gggtaatcaa ccatcagcca aaaaatattt accgcacaaa      1980
     agagagcaat cagaataatg agtggtgttc accctagatc ttcttgtaga aacctgttcc      2040
     gcaagttaaa aatattaacc actacctctc aatacatatt ctctataatg atttttgttt      2100
     caaataacct ttctcttttt aaactaatag tgaatatcat gaccacaata ctaggtctaa      2160
     aaatgatcta catagggatc ttaaacgctt aagtcttgta caaaaaggtg tccattattc      2220
     tgccacaaag attttcaact ctcttccagc agacatcaaa gtacatatta atgtcctgcc      2280
     tacatttaaa cacaagctga aacaatacct tgtggaaaag tcattttact ctcttgatga      2340
     gtatatgcag acaaaacaat gattgttcct gtaaattttg tattgccaca tttatttatg      2400
     tttcgagact ctctgtttta atgtattaat gtattataca tcttacccat ttatattgat      2460
     atgctttatg tactatgcat cttttttttc tcatcattgt tttatgttat ttgacctata      2520
     tgtttctaat tttatgtcta ttctacctta acattatcac cacttatgaa tgcctgttat      2580
     tgtgtaatta tttattgaat ctctgtattt tgtaaccatt tgtaacatga ctcattccac      2640
     atccatgtga tctatcacaa catgatttat gaataataaa taaa                       2684
//
ID   Daphne-74_LMi repbase;    DNA;    INV; 4591 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 20.01, Created)
DT   02-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-74_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4591
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 197-197 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(496..726,680..1126,1095..1247,1251..1454,
FT                 1487..1798)
FT                 /product="Daphne-74_LMi_1p"
FT                 /translation="MNEQSDANIQLKVSKPKATNTNSQHEKQDAGIIYLLS
FT                 DSHGKGLAEMMNEKLINQSVVGFVKPAHRCKKSPTHFHIQNQRTAARSRPH
FT                 ISTYSKQEVVTTSTKTWQNFFAIFKASMEKVKDAKVFVMSIPFRHDLINSS
FT                 CVNAEIEATNRNSGKYVIFQQCEYIMRTAREKRRIHLPWRMNRNKKGKAVL
FT                 CVITLKQLNQNQPSSCSSKGNQYQITFKCSNDSIQCRLNALMIPYNAETQE
FT                 DDFIKFHCSASSYNSANYKPSSNSRKKPSSLTKSTTAAEQISGTQAQKKIL
FT                 QQVTMKDECTVLPAHLIFFIEKIKVSGQLNMPESKISCKFTLIHQNVQSLQ
FT                 NKIKKASVMCITEHWLPKDAMSVTKLADFNLSSSFCRTTSSHGGSCIFVKT
FT                 GIDYCNIKPIEMLAKEKVFEVSAGELPALRIIIICVYRSSDGNLNDSASTR
FT                 SSFR"
FT   CDS           join(2121..2543,2486..2746,2686..2889,2835..2999,
FT                 3027..3401,3253..4281)
FT                 /product="Daphne-74_LMi_2p"
FT                 /translation="QQTNLLIQKLNEETWYEVYSYENTNKKFDKFMEIFMS
FT                 YFEAAFPLKQQKCQPNLKKNKWITKGIRISCAEKRRLHNIAKTQNMPHEFH
FT                 LYLKNYKRILKNVIRKAKTMANDKYIENSKNKSKAIWEVIKIKQQVKPRNR
FT                 KISYMGSYQNQTASETKKQKNINLCYEGQMISCPTKIAETFNKYFANISEE
FT                 LVSGLEEHNKISPPSSNSIKMCLHHCSFYLQIQKKFYQHKNVSTSLFLLPT
FT                 NTEEILSIIKSLKTGYSCGIDGIPDAIIKKCCLPLAEPLTHLCNTSLASES
FT                 SLHATLNTLVQHLTGIRIFPSCLKIAKVKPLLKKGNPENISNYRPIALLSV
FT                 FSKILEKITKNSLPSQHGFREGYSTESAIFEFLDKIYAKLDESEFVTGICL
FT                 DLSKAFDIIDHSALLQKLDQLGIRGISNKWLMTYLCERKQVVEIQHTDHNK
FT                 ISCYYSGYEKSEVWCPSRISIRTHSVSPLCQHTYVNANRWLKYNILTIIKS
FT                 AATIQDMKKVKYGVPQGSVLGPILFLLYVNDLRYNKYCQTTLQFADDTSFL
FT                 ISGKTEEELRDSAIQTMNSIEQWFTYNKLIINKEKTVALNFYNLKGKHHPN
FT                 IEIKLRDRVLESVDNTKFLGLWLQNDTKWEVHIEYRKKKLSKTCYMMRVLK
FT                 DCCSKAILLNVYYSYVQSVLKYGIIFWGNATSNIKIFRMQKRILRVIEGVN
FT                 NRKSCRPIFKKMSILPLPCIFIFETSVFIKQYMDRHPEILLKNEDVHAYNT
FT                 RQKSDLHVKQVKTSLCQKGTLHIGIKIYNNLPSHIKSLSKLSSFKTKLKAY
FT                 LIDHCFYSLTEYLDSNK"
XX
SQ   Sequence 4591 BP; 1795 A; 837 C; 774 G; 1181 T; 4 other;
     ggcggccagt gtagaggtaa atcgtgtatc tccgcgggaa aaaagtaaat ttcagatggt        60
     aaaaagaaat cgtgtgcatg aattgtaagg acgaaactat caaataagtg aacgtgtaac       120
     aagtttacaa ctcatcatcg gtactctaca gcaggatttc aaaaaacttc aatcggtaaa       180
     ataggtgcaa gaagactcag ccgccacaat gagtgctaac agtgacgaag aaactcgatc       240
     caggaagaaa actctaaaag acagtgcaac tttaggcacg tagcaggtac aaaatacaga       300
     cacatcaaat catggaaaaa gcgtatgata aaaccttttg ctaagaacag taagtaaacc       360
     aaaacgtgtg caacctacag ctgtaggcct aatgtggtag aaggaaaacg tacaaacaaa       420
     tcaaattctc aaagaaacgt actagatgaa cctaatattg tgcttaaaaa cagattcaat       480
     gtgctatcag aaacaatgaa cgaacaaagt gatgcaaaca ttcaactgaa agtttcgaaa       540
     ccgaaagcaa caaacactaa cagtcaacat gaaaaacaag atgctggcat tatttacttg       600
     ctttctgaca gtcatggaaa aggactggca gagatgatga acgagaaact aataaatcaa       660
     agtgtagttg gatttgtgaa accagcgcac cgctgcaaga agtcgcccac acatttccac       720
     atacagtaag caggaagttg taacgacgtc tacaaaaaca tggcaaaatt tctttgcgat       780
     ctttaaggca agcatggaaa aagttaagga cgcgaaagtg tttgtaatga gcataccctt       840
     tagacatgat ctcattaatt catcgtgtgt aaacgcagaa attgaagcta ccaaccgaaa       900
     ttcgggaaaa tatgtaatct ttcagcaatg tgagtatatt atgcggacag ccagggaaaa       960
     gagaagaatt cacttaccat ggagaatgaa cagaaacaag aaagggaaag cagttctgtg      1020
     tgttataaca ctgaaacaat taaatcaaaa ccagccctcc agttgtagca gcaagggaaa      1080
     ccagtatcag ataacgttta aatgctctaa tgattccata caatgctgaa acacaagagg      1140
     acgatttcat caagtttcat tgcagtgcct caagttacaa ctccgcaaat tacaaaccca      1200
     gttctaactc cagaaaaaaa ccatcgtcat taacaaaatc aaccacttga gcagctgaac      1260
     aaatatcagg gacgcaggca cagaagaaaa ttctgcaaca ggtgacaatg aaggatgagt      1320
     gcacagtact tccagcacac ctgatatttt ttattgagaa gataaaggta agtggtcaat      1380
     taaatatgcc agagtctaaa atatcttgta aattcactct gatccaccaa aatgtccaat      1440
     cattgcaaaa caaatgaaat gaacttgaaa tcttatttac tgatgaatta aaaaagcctc      1500
     tgttatgtgt ataactgaac actggctgcc aaaagatgca atgtcagtca caaaacttgc      1560
     agacttcaat ctttcatcat cattctgtag aactacatcc agtcatggag ggtcatgtat      1620
     atttgttaaa actggtattg attattgtaa cataaagccc attgaaatgc tagctaaaga      1680
     gaaagttttt gaagtatctg caggtgaact acccgcatta agaataataa tcatctgtgt      1740
     atataggagc tctgatggga acttaaatga ttctgcatct actagaagca gctttagata      1800
     gtacaaaaac tttaacaaga cagttatcat atgtggagat ttaaatactg acttgcagga      1860
     aatctcgaaa gaccagaaag cttaatgtca tactagaaac aacaacataa aacccaccat      1920
     agattcccct acaagagttc atcaacaatg caagctcaac aattgaccag atattaataa      1980
     acwtaaatgt aaacaacaaa ttctgtgctg gaactcttaa cactggtttc agtgatcact      2040
     atgtacagtt attgtttttc acaccccaag tgaaacaaat gagaaagcag aagttgtaaa      2100
     agaacaagaa aattcagtaa caacagacaa acctccttat acagaaatta aatgaagaaa      2160
     cctggtacga agtatattct tatgaaaata ccaacaaaaa gtttgataaa ttcatggaaa      2220
     tcttcatgtc ctactttgaa gctgcatttc cattaaaaca acaaaaatgc caacctaact      2280
     taaaaaagaa taaatggatt acaaaaggta ttagaatctc ttgtgcagag aagagaagat      2340
     tacacaatat agcaaagaca cagaacatgc ctcatgaatt tcatttgtac ctgaagaatt      2400
     acaagagaat cctcaaaaat gtcataagga aagccaaaac aatggcaaat gacaaataca      2460
     ttgaaaattc aaaaaacaaa tctaaagcta tatgggaagt tatcaaaatc aaacagcaag      2520
     tgaaaccaag aaacagaaaa atataaactt atgctatgaa ggacaaatga tttcttgccc      2580
     aacaaaaatt gcggagactt tcaacaagta ttttgcaaac ataagtgaag agttagtgag      2640
     tggactggaa gaacacaaca aaatatcacc tccatcatcc aatagcataa aaatgtgtct      2700
     acatcattgt tccttttacc tacaaataca gaagaaattt tatcaataat aaaatccttg      2760
     aaaacagggt actcctgtgg aattgatgga ataccagatg cgattattaa aaaatgctgt      2820
     cttcccttgg ctgaaccctt aacacacttg tgcaacacct cactggcatc agaatcttcc      2880
     cttcatgctt aaaaatagca aaagtgaaac ctctgctcaa aaaaggcaac ccagaaaaca      2940
     tttcaaatta taggccaata gccctactat ctgttttttc aaaaatttta gaaaaaatat      3000
     aagagattgt tggatttcct aaataaacaa aaaattctct cccctcacag catggtttca      3060
     gggaaggcta ttcaactgag agtgcaatat ttgaatttct tgacaaaatt tatgctaaac      3120
     tggatgagag tgagtttgta acaggcatat gtcttgatct atcgaaagct ttcgacatca      3180
     ttgaccatag tgccctactg cagaagcttg accaactagg aattagaggt atatccaata      3240
     agtggctcat gacataccta tgtgaacgca aacaggtggt tgaaatacaa catactgacc      3300
     ataataaaat cagctgctac tattcaggat atgaaaaaag tgaagtatgg tgtccctcaa      3360
     ggatcagtat taggacccat tctgtttctc ctctatgtca atgaccttag atataacaaa      3420
     tattgccaaa ctaccctcca atttgcagac gatacaagtt tcctcattag tgggaaaaca      3480
     gaagaagaac tcagagactc tgctatccaa acaatgaaca gcatagaaca gtggttcacc      3540
     tataataaac taattataaa caaagaaaag acagtagcac tgaacttcta caatctaaaa      3600
     ggaaagcacc acccaaatat agaaataaaa ctgagggaca gagttcttga aagtgttgac      3660
     aacacaaaat ttctggggct atggctccag aacgacacaa aatgggaggt acacattgaa      3720
     tatcgaaaaa aaaaactaag taaaacctgc tacatgatga gggtcttaaa agattgctgc      3780
     agcaaagcta tcctgttaaa tgtatactac tcctatgtgc aatctgtact taaatatggc      3840
     ataatcttct ggggcaatgc aacatcaaat attaaaattt tcaggatgca aaaaagaata      3900
     ctgagagtta ttgaaggggt aaacaatagg aaatcatgca gacctatatt caaaaaaatg      3960
     tcmattcttc ctcttccatg catatttatc tttgaaacat cagttttcat aaagcaatac      4020
     atggatagac acccagaaat cttattaaag aacgaagatg tgcatgcata caatacgaga      4080
     caaaaatctg atcttcatgt gaaacaggtg aaaacatcat tatgccaaaa aggcactctc      4140
     catatcggaa taaaaattta caataatctg cctagccata ttaaatcact gagtaaactc      4200
     agtagtttta agactaaact aaaggcatat ttaattgatc actgctttta cagcctaaca      4260
     gagtacctag acagtaacaa ataaaaataa atgtgcattg tgaatagtct attttgtatg      4320
     ttgkctctaa catttactgc atgtatgatt cttgctaaat tactcaaata cttagttcct      4380
     agaatgcaat acaaactgca ttctatatta ttatgaatat tctatcttgc ctctaatatt      4440
     tattttatat tgattcttgc caaattgctt aaatacctag ttcctaggaa tgcaacaaaa      4500
     ctgtatttta catgtaaaca mataaccatg tccaatatcc ttgtatatat tctatacatg      4560
     caggatgaga aggactaaat aaataaataa a                                     4591
//
ID   Daphne-75_LMi repbase;    DNA;    INV; 4315 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-75_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4315
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 198-198 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(790..1275,1196..3019,3007..3183,3143..4087)
FT                 /product="Daphne-75_LMi_1p"
FT                 /translation="PRPKQEISCQQDCTTKGKSGEQCTLMPTTQTSANIST
FT                 KTRSKLKVGTRNAVIGTGDEKGILYGDKKAWFHLGKLRHGTTSETVSNFLQ
FT                 NIFPNHNSFTVEKLETKGIHDSFKIGVDFDLKDKIMDSSIWPKNVVIRRFY
FT                 SGGCPVHQCDKHCKPRTFQWKSKDVFIPEDAQCTSAINTVNQGXSSGRASD
FT                 TIGENAELIIASVNVQCLRTKLDELSLFVEEVRPDVLCISEHWLIQPEIEY
FT                 YRCIEYLEIVNVWCRATAIHGGVYVNSALSAKKIDLSNFCVDKDLEVAALE
FT                 LPDANLIVVSVYRSPDGNFDNFINLLESCLCHLVRLGAKVALCGDFNIHIG
FT                 EGSTQELAFMNQVSSYGLFVANYLPTRGDSCLDTIVTNLNSWDYTVSVVDP
FT                 IIADHSAVVMKLCTNSVSTPQISSWHSNYVFRNRTITKKGLDTFKTTVSSI
FT                 NWHQIYDEVAPNDAFSCMFQTLRGKFDEHFPLKLKRSPNTKLYSSQKTVKV
FT                 KRWYTPRLTKIKCIVQLLNDKVKAAKDIDTKDRLYSSYLQAKRIYRKEIEK
FT                 AKKESNAKFIEEAHNPCKAAWALVNEHMEKPTSCTNSCSPDEFNEYFINIV
FT                 ERTVGEIPDLGIDPAITIKIENXCSMVTWKRVYAKDIIKIVKSYKPSVSPD
FT                 IYGMSCTVLKTIIYEIAKPLTVVINKCLHAGEFPDFLKVARTVPVYKKGNP
FT                 HEVSSYRPISIIPVLAKVIESIMKEQLVSYFEENYLLYDSQHGFRKGKSTT
FT                 TAVLDLISKISHGFEDKESRQRVIALVLCDLSKAFDCIPHKTLLNKLKSYG
FT                 IGGTVLQTLESYLRTDGRLYQCREQSQEQMADCISAGSSLSEKNVKHGVPQ
FT                 GSVIGPLLFLIFVNDLGSNGHTLQFADDTTLFAKGENIAQAVQQADVLFSE
FT                 TKAWFEMNRMKINEDKTQRMICSLSVTGVPGDTAAVKLLGYFIDTKLTWQQ
FT                 HTKHVCSKLSRTLYLLRKLKNIISEQYLLIVYYAMFHSHISYGLLLWGHSA
FT                 GCKDVLLLQKKAMRIITSSKKTDHCKPIFSRLGVLTVFSQYIFNCLMYIKI
FT                 NQETCTKRSDIHQHCTRSKDSLDRPRCRLTKTQSSFPMVAIKLFNVLPKEI
FT                 QLLPLEQFRETILCKLKEKPMYSIEEFFSSDITVTT"
XX
SQ   Sequence 4315 BP; 1525 A; 775 C; 888 G; 1123 T; 4 other;
     ggcgtcagtg aaagcttgtt ttgtgctaag tgcgaaaaaa cgtwaaggat acggaattta        60
     gtgttttttg cggactttgg tgcagaaaat cgttccatac caaatgtgtg ggcmtcagta       120
     atgctgaaga tcgcattgta aaatgttcaa aaggtcgcat aaaatacgtt tgtgaacact       180
     gttaagtgag gttaggtgac gaaacctcag aaggcgcaaa catggcaaaa tatgaacaaa       240
     ctttagacac taagcagcaa ggtgaggcag gtttacttgc attagtgagt gatctcagtg       300
     aaatagtgaa aaaagctgtg agtgataaca aagaataaaa gaaaaactag atactgtgat       360
     tactacaaac tataggctag aaatgtgtta cacctcgtta aaacaaagtg aagagcatca       420
     aaatcgacga tattgtggac aaacatatga gaagtggaat gtgtatcagg tgtatggcta       480
     aaactaaaca ggtaaacaca caaatctctg caaaacaaaa tacaggacag caatgtaatc       540
     agagaaacaa caccagtctc tatcaacgat catagcagca taaaatattg taaaatcaac       600
     aactggtgac tccacatcga aattacccca acatcgcagt ggcaagaatg catcagtgaa       660
     tcaaatccag tgttgaaaac aaccatttac aaatgtaaca atctatggac gaaaactctc       720
     cagtcagtca ggagggaaca agaagcaaga agtagaacat tgtcctgtac ttacaaaaac       780
     atcctttaac ccaggccgaa acaggaaata agctgtcagc aggactgtac tacaaaggga       840
     aaatctgggg aacagtgtac tttaatgcct actacacaaa catctgcaaa tatcagtact       900
     aaaaccagaa gtaaactcaa agtgggcact agaaacgctg taataggtac tggtgatgaa       960
     aaaggaatcc tatatggtga caaaaaagcc tggtttcacc taggcaaact gagacatggc      1020
     actacaagtg aaactgtaag taacttctta cagaatattt tcccaaacca caacagtttt      1080
     acagtagaaa aactagaaac gaagggaata catgatagct tcaagattgg tgttgatttc      1140
     gacctaaaag ataaaattat ggacagcagt atatggccca aaaacgttgt aataagacgt      1200
     ttttattccg gaggatgccc agtgcaccag tgcgataaac actgtaaacc aaggacwttc      1260
     cagtggaaga gcaagtgaca ccattggaga aaatgctgag ctgattatag caagtgtaaa      1320
     tgtgcagtgt ctcaggacaa aacttgatga attgtcgctc tttgttgagg aagtgagacc      1380
     tgatgtactg tgtataagtg aacactggct aattcaacca gaaatagaat attacaggtg      1440
     tattgaatac ctggaaatag tgaatgtatg gtgtagagca actgctatcc atggtggtgt      1500
     gtatgtgaat agtgcactca gtgccaagaa aattgattta agtaacttct gtgtagataa      1560
     ggatctagaa gtggctgcct tggagctacc agatgctaat ctaattgtgg tttctgtata      1620
     tcgatcccca gatggcaatt ttgataactt tattaatcta ctggaaagct gtctgtgtca      1680
     cctagtgcgc ttaggagcaa aagttgccct ctgtggagac tttaacattc atattggaga      1740
     aggtagtaca caggaattgg ccttcatgaa ccaggtaagc agctatggac tgtttgtggc      1800
     aaattatcta ccaacaagag gagacagttg tcttgacacc attgtcacaa atctaaacag      1860
     ctgggactac acagtaagtg tggtagatcc tataattgca gaccacagcg cagtggtcat      1920
     gaaactatgt acaaactcag tgagtacacc acaaatttcc agctggcatt caaattatgt      1980
     gttcagaaat aggactatta caaagaaagg cttagatact ttcaagacta ctgtgtcctc      2040
     tatcaattgg caccaaatat atgatgaagt ggcaccaaat gatgcattca gttgcatgtt      2100
     ccagactctc agaggcaagt ttgatgaaca ctttccacta aaactcaaga gaagtccaaa      2160
     taccaaatta tattccagcc agaaaactgt caaagtaaag cggtggtaca cacctagact      2220
     aaccaaaata aaatgtattg ttcaactgct aaatgacaag gtaaaagcag ctaaagacat      2280
     tgacaccaag gacagactgt acagtagtta tctacaggct aaacggattt acagaaaaga      2340
     aatagaaaaa gcaaagaagg aaagcaatgc aaaattcatt gaggaggccc ataatccctg      2400
     taaagctgca tgggctttag ttaatgagca catggaaaag ccaacctcct gcacaaattc      2460
     ctgcagtcca gatgaattta atgagtattt tataaacata gtggaaagaa cagtaggtga      2520
     aattcctgac cttggaatag atcctgcaat taccataaaa attgagaatm gttgcagtat      2580
     ggtaacatgg aagagggttt atgcaaaaga cataataaaa attgtaaaaa gctacaaacc      2640
     ttcagtgagt ccagatattt atggcatgtc ctgtactgta ctaaaaacca taatatatga      2700
     aattgctaaa ccactgacag tagtgataaa taaatgtctc catgctggag aatttccaga      2760
     tttcttaaaa gttgcccgca cagtacctgt ttacaaaaaa ggaaatccac atgaagtgtc      2820
     aagttacagg cccatatcca taataccagt actagctaaa gtgatcgaat caataatgaa      2880
     agagcaactt gtaagttact ttgaagaaaa ttatctcttg tatgattcac agcatgggtt      2940
     tcgaaaggga aagtcaacaa caacagctgt acttgattta atttcaaaaa taagtcatgg      3000
     atttgaagac aaagagtcat agctttggtt ctctgtgacc ttagtaaggc gtttgactgc      3060
     atcccacata agactttact caacaaacta aaatcatatg gtattggagg aactgtcctg      3120
     caaactcttg aatcatactt aagaacagat ggcagattgt atcagtgcag ggagcagtct      3180
     cagtgaaaag aatgtaaaac acggagtgcc gcagggatcg gtcatagggc ccctcttgtt      3240
     tcttatattt gtaaatgacc taggctccaa tggacacaca ctgcagtttg cagatgatac      3300
     taccttgttt gcaaaaggag aaaatattgc tcaggctgta cagcaggcag atgttctgtt      3360
     cagtgaaacc aaggcctggt ttgaaatgaa cagaatgaaa ataaatgaag acaaaacaca      3420
     gaggatgata tgtagtctca gtgttactgg agtaccgggt gacacagcag ccgttaaact      3480
     actgggttac ttcatcgaca ccaagttaac ctggcaacaa cacactaaac atgtgtgctc      3540
     caaactttca cggaccctgt acctcttgag aaaactaaaa aatataatct cagagcagta      3600
     cttgcttatt gtgtactatg caatgttcca cagccacatc agttatgggc tgttgctatg      3660
     gggccactct gcaggctgta aggatgtgct cttactgcaa aagaaagcta tgaggatcat      3720
     tacctcaagc aaaaaaactg accactgcaa acctattttt tctagattgg gtgtgctcac      3780
     tgtgttcagc cagtatatat ttaactgcct catgtacata aagataaacc aagagacctg      3840
     cacgaagagg agtgacatcc atcaacactg cacccgcagt aaagacagtc tagacagacc      3900
     aagatgtcgt ttaacgaaga cacaaagcag cttcccaatg gtagctataa aattatttaa      3960
     tgtactacca aaggaaatac aattattacc actggagcaa tttagagaaa ctatcctgtg      4020
     taaattaaaa gagaaaccga tgtacagcat tgaagaattt ttttccagcg atatcacagt      4080
     gactacctga cttctaactt gatgtcaaga atagactatt tgttttttgt ttgttcttgt      4140
     attaatatta ttgtgcagtt attgttaagt gcatattatg ctcaatttat gttaaaatat      4200
     gtgtaatctg atcacagttg ttggattcat tttattgtga tgtaaatatt gtaattttga      4260
     cgctgtctgt ccagccatgg ctggtgaatg acaaagattt ggtaataaat tggaa           4315
//
ID   Daphne-76_LMi repbase;    DNA;    INV; 2435 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 20.01, Created)
DT   07-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-76_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2435
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 125-125 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2435 BP; 952 A; 444 C; 369 G; 666 T; 4 other;
     aaactagacc tcaggtcagg aagtatagtg atgaaaatat agattatttt tgttatcttt        60
     taaaaagagc aaactggtct gatgtctcac acctcagacg atacagatgc aagtttgata       120
     aatttatgac cacgtataaa catagttttg aaatagcttc cccaaaacaa acaacagtaa       180
     taaaatctgc atccaattca aacaattgga tcacagcagg aataaaaatt tcatgccaga       240
     gaaaaaggat attatatgaa tactcaaagc aaaccacaaa tcctaatttt atcaactatt       300
     ttaaacaata taaaaggata cttagacaag taatagcaaa agcaaagaag ttagaaaatg       360
     caaacaaatt aagaattcca gcaacaagac caaggcaaga aacaggtgca aaatcattag       420
     attataatac gtaatataga acttaatgaa aatgacagga taataaccga tcccacactt       480
     gtggctagta aatttaatac ccacttttcc agtatagcac aacacctgat tacaaaacac       540
     aaccagatag caacagcctg cttcagaggc aagcttcaca ccagaacatt attcatgtcc       600
     cctacaacac tgacgaagta ccatattcat aagaaaaama ttaaaatcca ccggcaagta       660
     ttcagcaggt acacattata taccagatat tattataaaa gcaagtgtag aattcattgt       720
     aggaccatta acagataata caattcatca ttcacaactg ccatattccc aaaaaatcta       780
     aaaattgcaa atgtaacacc acttaaaaaa ggggacaaac atgatgctac aaactatagc       840
     caaaatcagt tttgtcaggc tttggaaaaa tctttgagaa actatttctc aaaagactga       900
     ccttttctca aaaatgaaaa gttgtgagcg actgtcaaca tggtgtttca ggactggcag       960
     gcaaccacgt cagccacttt tgcattctta aagaagtgtt agctgcagtt gatgataagc      1020
     aacatgtttc gggcatattt cttgacctta gtaaagcttt tgatgttatt gatcatgata      1080
     ttttacttca aaaactaaat aattatggga ttcgaggcgt accaaacatg tggatccatt      1140
     cttacctcca cgatcgtcga cagatcaccc aaataaaata caaagatgca aacactcatg      1200
     aagtttctaa tttttatagt aatgcacaaa aaaaaatcag ttatggagtc cttcaggatc      1260
     agtccttggc cccattcttt tcattcttat gttaatgatc tagcagaaag aataaccaat      1320
     ggaccacagt acttttcgca gatgacacaa acatcctaat tagatcatgt gatgaagata      1380
     gcctacaaga aacagmtaga gacttaacaa aaactttaga acagtggttc agaacaaaca      1440
     ggcttataat aaattctgaa aaaacagtga cagtaaattt ccatacaaca cagaaacttc      1500
     accctgcaac accgtctctt gacattaatg gaaaaaccat ctcatcagtg agtgagacaa      1560
     aatttttagg catacatatt caggaaaata tgaaatggka aacacatttg aataacctaa      1620
     ataaaaagwt aagtacactc acatatgctg taagaatact gtcacaaaat acaagccgtc      1680
     caacagtgat cacaatgtac cacagtagta tacagtcact actgacgtac ggaattatct      1740
     tctggggaaa caccacaaac agcaacaaaa catttaggct acagaaaaga ataattagaa      1800
     tcataaacca tgcaaaatac agagactcct gtagaccaat atttaaaagt ctcaggatac      1860
     ttccccttcc ttctttatat atataagctt cacaaaagga aacctgttga aaaaagaccc      1920
     tattttcaag tacaactgtg attttcatga ttacaacact aggcagaagc ataacctaca      1980
     tgtcagcaca gtacgtacga atatatgtaa aggaggtgta tatcatactg gtgttatgct      2040
     gtataaccac ataccatctg aattgaaaca gataacagat gtacataagt ttaaagttaa      2100
     actgaaagaa tacttgcttg accactgctt ctattctgtt tcagagtttt tagaagtcaa      2160
     taattcttaa tgttaccatt caagagcaat atgtgttgtt aaacatttat taaattgttt      2220
     atgtaaatat tcgaaatatg tgtgctaatc atagaagtta aaattgtaat taggctactt      2280
     ttgttttcaa aaaatgatat cactgtgtaa tgtgtgttac accctgtttt aaaaaccata      2340
     gtaggtatgg tataaattaa ctgacatgtc ctatatcgta tgtacagata atgtactgaa      2400
     ttgcgattaa caggatcaat aaaaaaaact tgaac                                 2435
//
ID   Daphne-77_LMi repbase;    DNA;    INV; 3451 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 20.01, Created)
DT   07-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-77_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3451
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 126-126 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 3451 BP; 1292 A; 577 C; 566 G; 1016 T; 0 other;
     cgaaattgtt tcactagctt ggtgtgcctt aaatcagcgt ggaagaaggg actttcaaca        60
     aatgtaaacc attctgtaga tgaaatattc tgtgaaagaa acttcagaaa tgaatcttca       120
     attgtgttgg gtgcttattt acagggaaac tagtaaaaca agccaattcc tgtcggattt       180
     ggtccgaaac aaacaaggat tcaaatctcg cacaaatcat tgtaaacaat gaaattcgca       240
     aaataagcag tcaaacactg gtaaatacat ctgctaataa gttttcaaat gtgttaaaac       300
     tactgcacca caatgttcaa tctctagaaa ataagttact tcagtttgaa ttagtaaatc       360
     ttgaactaaa aattgatatt ctgtgtataa ctgaacactg gttagacaaa gacgaaatta       420
     tgtcaactgt aattcctggt tacaaactcg ccagttatta ttgtagaagc aatactaaat       480
     gtggtggaac agctattttt gtaaaagatt atttaaaatt tactgaaata aacaagtatc       540
     aaaacttggc aagagaccaa gactttgagc tgtgtgtagt tgatttgaca gatgttaata       600
     tcttgattgt gacattatat agatctgggg actgggaaat tttccttaaa aattttgaaa       660
     ggctactaaa ttacataaaa tgtgatagga aaaaagtggt tatctgtgga gatgtaaatg       720
     tagacttttt aaaagatttg aatcatagaa atgagatgtt aaatatagtt aatagttttg       780
     gttttgtgca cacagtcaat tctccaacta gaattactgc caatagtaaa actgcagttg       840
     accaagtttt tgtaagatta tgtgacctaa aacatagcac tagtgttgta aatatgggct       900
     acagtgatca tgaagctcaa ctcctgtcta ttgaactgaa ctcagacaaa aagtgtggac       960
     caaaaactaa agtaattgaa cagagagact tcagtgatga taacatcaga gtgtttaatt      1020
     ctatgctgtc aagggaaaat tgggaggatg tctttagtaa aactgatgta aatagcatgt      1080
     ttggcagttt ccacaatgtt tacctgcatt actttcatat agcatttcca atgagaaaaa      1140
     ggaggattca gatagaaaaa aataaatctt gggtaacaaa aggcatcata acatccagta      1200
     gaaagaaaag aattcttcat tctatcatca agcaaaaaaa taccactcca gaattcagaa      1260
     attatgtgaa aaaatataac caaatattca acaaggtaat aaaagaagcc aaaaaagaga      1320
     aaaaatgatg actacatttc aaatgcaaaa ataaaatgaa agctgtctgg aaggttatta      1380
     gagcagaaac tagtacagaa cagtcagcat caaagaatat ttctctgaaa actggaaata      1440
     acatactttc agatccaaat gaagtagctg ataacttcaa catttacttt acaaatatag      1500
     caaataagtt aattaaaagt cagtatgaag atggacctat gtggcaacca aattatttaa      1560
     atgctagtgt taagtcaatg ttccttcaaa cagtcacaga gacagagatt aagcaaataa      1620
     taaggtcact gaaaaacaaa tattcatgcg gactggacgg tgtgccagac tatgttttta      1680
     aaaagtcctc tgatcatgta ataaaaccat taatacatat agtaaacaca tccttatcaa      1740
     ctggaatttt ccctaattgc ttaaaaacag ctaaagtaac tccacttttc aaaaaagggg      1800
     atactgaaaa tataaataac tatcgtcccg tatcccaact cagtattttc tctaaaatat      1860
     ttgagagagc tttctacaat aagctactaa attacatcac aaaaaattca ttactgtcat      1920
     caaatcaaca tggattcagc aaatccaagt ctacaacaac agcaatgtat gagtatttag      1980
     aagctgttct aaaagcactg gatgacagag aacatgccac tggcatcttt atagatctct      2040
     ccaaagcatt tgatataatt gaccatgaca ttcttattca aaaattagct caaaaaggtg      2100
     taagagggat cccaaatcag tggataagat cttacctaga agacaggcag caagtggtgg      2160
     ttctaaggca tgatgatatt acaggaaata ccatcactac aaccacacat atctcaaaaa      2220
     gtcaccaata aagtatggag tgccacaggg ttctgtccta ggacctctac tgttcctcct      2280
     ttacattgat gatttaaatg actttattga attggggaaa ctaatcttat ttgctgatga      2340
     caccagcata ttaatatcag ctgctaacaa aatctctatg gaagtagcag tagatacctt      2400
     aatgtcccaa attactagct ggtttcaaaa aaatagaata ataataaata aaaaagaaag      2460
     aaaaatctgt ctgtatgaat ttccattctt ctccacttgt tcaaacaact gaaaccacac      2520
     cataccttga caacacgtta ctaaactctg ttactgaaac taaagttcta gggatatggg      2580
     ttcaagataa cttaaaatgg gactgtcatg tgaaagaact tgagaaaaag ctttcaaaag      2640
     cttgttatgc tcttcgtgtg ttaagaaaaa gtgcgagcaa gtcaacagtt attcaggcat      2700
     attatgcata tttccatgca ctactccgat atgggctaat cttctgggga aattcaccca      2760
     ccagcataaa aatctttagg gtgcagaaaa gagcaatcag ggctatctgc aacctaaaaa      2820
     actggaaaca tgtagaccac atttcatcca gctgaaaata atgagtttac caagccttta      2880
     catatacgag tccatcctgt ttgcaaatga ttatctctta aaccaaactg gatatctttg      2940
     tcaaaataag catattcaca cccacaacac aagaaacatg aatgatatcc acatgtctca      3000
     gtgtagaaca gcattctatc aaaaaagtgt atcaaacata acagttcagc tatacaacag      3060
     cctacctcgt gacttaaaat tgcagcagca tacaaatatg tttaaacata aacttaagtc      3120
     atttctggtg gaaaagtgtt tctactctgt aaaagaattt ttgaactata aaaaatagcc      3180
     ttgtaaacaa gagtgaagag tatctgtttt ttttttttta attatggaaa atagcattgt      3240
     aaataatgag tatgtaattt tggttaaatc caaagtgtgt tgcttgttac ttgtaactta      3300
     tcattgttat ctgtaattaa tgttctctct ctctctctct ctctctctct ctctctccct      3360
     gatcttttcc aaattttgac ttgtcctata ttcagtgtac tatccaagta tgtaatgaat      3420
     caattggacc aataaaaatg aaatgaaaat g                                     3451
//
ID   Daphne-78_LMi repbase;    DNA;    INV; 3099 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 20.01, Created)
DT   07-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-78_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3099
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 127-127 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 3099 BP; 1015 A; 590 C; 632 G; 849 T; 13 other;
     tattttcctg aaagaagacc tggttgcatt tgggtaagct aaacaaatgg cacaacagct        60
     gaaaatgtag ctactttctt ggaaaagtkt gttccagacc acaagaactt tgtagtgaaa       120
     ctaagcacaa agggttcaat agcagttagc tgcgagtatg aactttaatg gatccttatg       180
     gtggccaaaa atgtgcataa ggcatttttt atcaagatga agtacagcta ccaatccagt       240
     aattattcca gaagaaaatg tgcctgttgt tagcaagtgt aaatatccag tgtatcagaa       300
     caaaactgaa cgctttaaca atctttgtgg atcaattgaa acctgatgtt ttgtgcatca       360
     gtgaacactg gctagctgag caggaagggg atttatgaac accttsaatt ataagtgcat       420
     ggtatcacaa atcaactgcc catggtgggg tatctgttta tgcaaatatc agtctggtgt       480
     ccaggaagtt gacctaagta agttttgtgt tgactggata tagagctggc tgcattaaaa       540
     ctctgtgatt taaatattgt tgttgtgtct gataattttc tcacaaagat ggacagctgt       600
     ttgtgctacc ttatgcgtat gaatttaaaa attatgttgt ttggtgattt caacatccat       660
     ttggagaagg cagcaccaag aaaaaccatt aagaacttag tgagtagcta tgggttgtat       720
     gtggctaacc atgaaccaac aagggggagg cttgccttga cactatatca caacctaaac       780
     acctkgtact tcaaaataag agtagtggat agcagatcat gatgcattag ttgcccacct       840
     aaactgtcaa agagaccgtt catagaaaac cagtatgtgg tactctgact ataccttcag       900
     caaaagaact atacgagaac atctcaaaaa tgtgcttcca ggattgattg gcagtctgaa       960
     tktgaagggc tgggaccaag tgatgctttt aattgtattt tccagctcct caaaacaaat      1020
     tttgacaact gtttcccacc agtaaccata aagaatccat agataaactt caaaaagaag      1080
     aaaagtaggc agagacaaag catggtacaa tcccaacctg gaaaacttaa agtgtgtagt      1140
     tttgctgcta aatgacagag ttaaaacagc aacagatgcc aaggtcaaag atatgtatca      1200
     ctgttattat ctgaaagcca aaagaatcta caggggaagc tagagcagcc aagaaggaat      1260
     ataatgttag gttcatatct gaagcccaca acccatgcaa agcagcctgg gcattggtta      1320
     atgaacacag aaaaagaccc actgccccat taaatgctgc agcccagatg attttaataa      1380
     atattttatt gatgttgtca gggaaaatgt aacagaagta ccagatttgg aaatagacat      1440
     tgcaggcaat agcagatgta cattgaccag gtggaacaaa gtgctcccga ggacagtgaa      1500
     aattgtaaaa ggttttaaac attctgttag cacagatata tatggcatgt cttgtggtgt      1560
     cctgaaggst attgtatctg taatwkctga acctttggct gctgtcataa accaatgcct      1620
     tgatgttggt acwttcccag acttattaaa actggcaaga cagtaccagt ttwtaagaaa      1680
     ggtgatccta acagtccatc cagctataga ccaatttcca taatacctgt gctagcaaaa      1740
     gtgattgaga ctataatgaa gaaccaactg ttgtgctatt ttgaagacaa caacctgttc      1800
     ctagataacc aacatggatt tagaagaggc aaatccacat tcactgcaat gcttgatgtg      1860
     acaacaaaaa taatggaagc atttgaagaa aagaactgcc tggctttaat tctttgtgac      1920
     ctaagcaagg cattcgattg catctctcat aagattctgt tggaaaagtt aaaatcttat      1980
     ggtataaagg gtgccatttt tgatactcta tcttcctacc tgagagacag gcggcagagt      2040
     gtttgtatcc agggagcgat gtccgtgaaa tgacacttga gcatggagta ccacagggct      2100
     ccgtacttgg ccctctgctc ttcctaatat atgtcaatga tctgagttgt gatggtcata      2160
     ccttgctctt tgcwgatgat acaacattaa tgacaaaggg caggaactct gctgagacwc      2220
     taaasgatgc tgatattctg ttcgaagtag ccaaaaagtg gttcaaagcc aacaacatga      2280
     agctaaatga agataaaacc cagaaaatat tatgcagcct tggtgactgt ggttccatat      2340
     cmaatgaaga cagtgtcaaa ctcctgggta tcacaatcga caataagctg acgtgggccg      2400
     aacacacttc acatgtgtgt tctaagctct ctagagtcat ttatctcctc aggaagctca      2460
     aatgtgttat aacagatcaa tacttaatca cagtatatta tgcactgttc cacagccaca      2520
     tcacatatgg actgttactg tggggacact ctcctggaag tcaaaacatt ttgctcctgc      2580
     aaaagaaggc tgtaagaata atatcttcca gcaagagatt agatcactgc aaacccattt      2640
     tcaagaagct gggtataatg acaatatata gtcagtatgt cttcaactca cttgtctaca      2700
     taaaagaaaa tgaagcatcc ttctgcaaga gacaagaaat ccacaaccac aatacacgga      2760
     ataaggctga cattgatata ccaagctgtc gcctagggaa gacacttagc agttttccca      2820
     cagctgccca gaagatgtac aaccacctac cacctgatgt tcgagcatta ccaccaagga      2880
     tgttcagaaa tagactgaca cgtgtgctca agcaacaccc actatattct gtaaatgagt      2940
     ttttctctat atgtgaagcc acagactgat catggttcct acaagtgttg tttataacca      3000
     ttgtttataa aagtgttgtg tttcttttaa cagttttgta tgttctgacg caatctgtcc      3060
     ggccatggcc ggtgaacgat taagacctag taataaagt                             3099
//
ID   Daphne-79_LMi repbase;    DNA;    INV; 4586 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 20.01, Created)
DT   07-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-79_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4586
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 199-199 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(384..1004,1008..1325,1271..1651,1618..2076,
FT                 2080..2826,2811..4244)
FT                 /product="Daphne-79_LMi_1p"
FT                 /translation="MDTRPNNSHSNNSSQLLQKDIKDLRLENAKLREQVAQ
FT                 MDTRPNNLHSXNSAQLPTQSSNDXRRWESVPRKRTITKKLKDYXTSFPXLR
FT                 NRFGVLSKSEIDDXXVXTDDGKNSISNXSVASNVCSVTNRVPISVKKSKIR
FT                 IISDSHGRGMSSLLXSVLNDNTNYAVDGFTKPGASMSNVVGKSDFSDFSTN
FT                 DFVVVIGGSNDVAKSSLGYICPQKTLANLTHKLHNSKLTHRHDLNDTSPVH
FT                 KEITKTNCKYKQICDHFNNVTLINAGTFKRDQFTKHGQHFNYSGKMALCQA
FT                 LTEVVHTSLMSQKTIIQGNLQSCTYKFNVTENNNPGKLAVKTKPCFCKSWS
FT                 DKIQTHPITMSSSNDKPVPQLKVRDCEFLSFFHINIQSVRNKLQELELFLD
FT                 EFQCDILCLNEHWLKVDECQMYIPVGFKFLTGYFRSHMEKVEYQYSIPYGK
FT                 GGVSIFIKSDLSHTAKVIDLNHLVHEGXTEMAAIHLPELKIVVVSLYCTPK
FT                 IDIKVRVHHIDELLMYLLKFKNHKILIIGDINTDVTIQDSKSRLLLDTLKS
FT                 HNFTCLNNKPTRLNACLDNVISNISKEDAVLNVVKPLLSDHDGIFFIMGPK
FT                 SEYKQSTEPRAVRQLNPVNVISLNEKLVSIDWNSTVLMNNSLGDAFDYFLH
FT                 TITSTVNEQCPLITKRNRANGKKKLRRNLTNWYTPYLNNLRILLKICHDKS
FT                 QSNNEITLLYIKLKKLYRKEIISAKQTANDNYISQSNNKCKAAWDVVKSES
FT                 GLIADKSPIPLSPDELNYSFINSGKFHITDENNLDARADQLNHLQETELKD
FT                 NLPKFEWETISPKDILCVVRSMSSSRTEDIHSLSNFILKKFYPEKIIHSIC
FT                 IPLSYLINRMFREGTFPDCLKQTIILPIHKKGDRNSPQNYRPIAIVPVVSK
FT                 IIETLMKTQLNYFFEYHNLLNKAQYGFRTGRSTIHAVEEVVSLVLRGFENR
FT                 EHTYATLVDLSKAFDTVSHSLLIKKLENYGIVDTELALLNSYLTNRYQMVV
FT                 VNSNKKSDLLKVKYGVPQGSVLGPFLFIVYVNKLPNTLSCKTVMYADDTTL
FT                 LTTHVDVKVVKLMNDSMMETAAKWFHENKLTLNANKTEHILFSLRDIHNEH
FT                 SRSVKLLGIYLDSKLSWITHTEKLCSKLAKILYLIRKLKACVSTEILLMAY
FT                 YAFFHSHLHYGVLLWGNSAGAKEVFLWQKKVIRCIFGLSNETSCRQYFIKY
FT                 RILTVPCLYILQALLHTKQNIHMHECRSDIHSYQTRHRNLLDIPWTRLSKV
FT                 QKNFLHTGKVFLNYLPSDIRAMPQNKFKRVVESWLKSKAFYDINEFLDNEE
FT                 KGDFSHTL"
XX
SQ   Sequence 4586 BP; 1577 A; 860 C; 784 G; 1353 T; 12 other;
     caaaatggca ccaggtagag tggtcgagtc tatttcaact cgttctaaaa gtcatgttct        60
     actagatata aagtgtgtaa agtgtaaaaa aatgtgcgaa acggaattct gtgcgacttt       120
     tgcgacaaat ggggccattt tcggtgcgct gaagtgtcgg aaaacagtct accagatgaa       180
     aatactgaat ggagatgcca cagttgtgta gatcctaacg gtaaacaggt acgttatgtc       240
     agtgtctctg gcgagaatga ttacagtcct gctaccgtga tgcacaggat gtaaacgact       300
     ggaaaaaaat catctcactg ctacaaaaag acaatcaaga gctccagtta gagaacgcaa       360
     aacttcgtga acaggttgca caaatggata ctaggcctaa caattctcat tctaataaca       420
     gttctcaatt gctacaaaaa gacattaaag atctccgatt agagaacgca aaacttcgtg       480
     aacaggttgc acaaatggat actaggccta acaatcttca ctctaakaac agtgctcaat       540
     tgcccactca atcaagtaac gatkttaggc gctgggaatc tgttccgaga aagmgaacta       600
     tcacaaaaaa gcttaaagac tatgwtacca gtttccccmm tcttcgtaat agatttggag       660
     tgttaagcaa atctgaaata gacgaccmtw ctgtggstac tgatgatggt aaaaactcaa       720
     tttcaaacst aagtgttgct tcaaacgtgt gcagtgtaac taatcgtgtg ccaatctctg       780
     taaagaagag caaaataagg attatttccg acagtcatgg ccgaggtatg tccagccttt       840
     taagwtctgt gctgaatgac aatacgaatt atgcagtcga tggttttacg aaacctggtg       900
     cttcaatgag taatgttgtg ggtaaaagtg acttttctga cttctcaact aacgattttg       960
     ttgtggtaat tggaggttca aacgatgttg caaaatcaag cctctgaggc tacatctgcc      1020
     ctcaaaagac attagccaac ctcacacaca aactccataa tagtaaactt acccaccgtc      1080
     atgacctgaa tgacacttca cctgtacaca aagaaataac taaaacgaat tgcaagtaca      1140
     aacagatctg tgatcacttc aacaatgtga cattaattaa tgcaggtact ttcaaaagag      1200
     accagtttac taaacatggt cagcacttca attactctgg taaaatggcc ttgtgccaag      1260
     ctcttactga agttgtacat acaagtttaa tgtcacagaa aacaataatc cagggaaact      1320
     tgcagtgaag accaagcctt gtttttgcaa gtcttggtct gataaaatac aaacacaccc      1380
     aataactatg agctcttcta atgataaacc tgtgcctcaa ttaaaagtta gagattgtga      1440
     atttctttcc ttctttcaca tcaacataca gtcagtgagg aacaaactcc aagaacttga      1500
     attattttta gatgaatttc agtgtgatat tctgtgcctc aatgaacact ggcttaaggt      1560
     agatgaatgt cagatgtata tcccagttgg ctttaaattt ttaactggtt attttagatc      1620
     ccatatggaa aaggtggagt atcaatattc ataaaaagtg atttgtccca cacagccaaa      1680
     gtaattgatt taaatcattt agtacatgaa ggacwaactg aaatggctgc tattcattta      1740
     cctgaactca agattgttgt agtgtctttg tactgtacac caaaaattga tatcaaagtt      1800
     cgtgtccatc atatagatga actgttaatg tatttactta aatttaaaaa ccacaaaatt      1860
     ttaataattg gtgatattaa tactgatgtg accatacagg actctaaaag tagactactt      1920
     cttgatactc ttaaatcaca taattttact tgtcttaaca ataaacctac caggctgaat      1980
     gcctgcctgg ataatgtcat ctctaatatt tctaaagaag atgcagtttt aaatgtagtc      2040
     aaacctttgc tatctgatca tgatggtatt tttttttaaa taatggggcc caaaagtgaa      2100
     tataaacaat ctacagaacc tagagcagtg aggcagttaa acccagtaaa tgttataagt      2160
     ctcaatgaaa aacttgtgag catagattgg aattctactg tcctgatgaa taattcatta      2220
     ggtgatgctt ttgattattt cttacacacc attacaagta ccgttaatga acaatgtccc      2280
     ctcatcacta aacgcaatag agctaatgga aagaaaaagc tgaggagaaa tttaactaac      2340
     tggtacacac cttatttgaa caatttaaga atactgttaa aaatttgcca tgataaatct      2400
     cagagtaata atgagattac acttctgtac atcaagttaa aaaagcttta cagaaaagaa      2460
     atcatttctg caaagcaaac agcaaatgat aattatattt ctcaatccaa caataaatgc      2520
     aaagcagcat gggatgtagt taaatcagaa tctgggctaa ttgctgataa atctcctatt      2580
     cctctaagtc cagatgagct aaactatagt ttcataaatt ctggtaaatt tcatattaca      2640
     gatgaaaaca acttagatgc cagggcggat caacttaacc atttacagga aacagagcta      2700
     aaagataact tgcccaaatt cgaatgggaa accatctctc ccaaggatat actttgtgta      2760
     gttaggtcaa tgagcagctc tagaacagaa gacatacaca gtttatctaa ttttatcctg      2820
     aaaaaataat acactctatt tgtattccac tatcctatct gatcaatagg atgtttaggg      2880
     agggaacctt tccggattgc ttaaaacaga caattatctt gcccattcac aaaaaagggg      2940
     atagaaattc cccccagaac tacagaccca tagcaattgt acccgtagtt tcaaaaatca      3000
     ttgaaacttt aatgaaaacc caactaaatt atttttttga atatcacaac ttacttaaca      3060
     aggcccagta tggttttcga actgggcgat caacaattca tgcagttgaa gaagttgtgt      3120
     cattagtatt acgtggtttt gaaaataggg agcacaccta tgccacttta gttgacctat      3180
     cgaaggcatt cgacaccgtc tcacacagcc tcttaataaa gaaacttgaa aactatggaa      3240
     ttgttgacac tgaactagct ctactgaact catatttgac taacaggtat caaatggtgg      3300
     ttgttaactc taacaaaaaa tctgaccttc tcaaggtaaa atacggtgtc cctcaggggt      3360
     ccgtgctagg ccctttcctt ttcattgttt atgtgaataa gctccccaat acactatcgt      3420
     gcaaaacagt gatgtacgct gatgacacca ctcttctcac aacacatgta gatgtgaagg      3480
     ttgtcaaact aatgaacgat tccatgatgg aaacggctgc taagtggttc catgagaata      3540
     agctaacatt aaatgcaaat aaaactgaac acatcctctt ctccctcaga gacattcata      3600
     atgaacacag tcgctctgta aaactattag gcatatacct agatagcaaa ttatcttgga      3660
     ttacccacac ggagaagctc tgcagcaagc tggcaaaaat cttatatcta attaggaaac      3720
     taaaggcctg tgtgagcact gagatcttac ttatggcata ctatgccttc tttcattctc      3780
     accttcacta tggagtactc ctgtggggaa actctgctgg tgcaaaagag gtctttctgt      3840
     ggcagaagaa agtcattaga tgtatttttg gcttgagtaa tgaaacttca tgcagacagt      3900
     atttcattaa atacagaata cttactgtcc cctgtctgta tatattacaa gctctccttc      3960
     atacaaaaca aaatatccac atgcatgaat gtaggtcaga catacactca taccaaacta      4020
     gacacaggaa cttattagac attccatgga ctcgtctaag taaagtccaa aaaaattttt      4080
     tacacacagg aaaagtattt ctcaactatc taccttctga tataagagcg atgcctcaaa      4140
     ataaatttaa aagggtagtc gagtcttggc tgaaatcaaa agctttctac gacattaatg      4200
     aatttttaga taatgaagaa aaaggtgatt tttcacacac actgtgacta agttaactta      4260
     tttgttcaat tcttatttgt gttttatttc aatttgttac taaatttgta aataatgata      4320
     aaaattggtg atctcttaca atcagtgtga ctaaaccaac ttattgttca gtactgttaa      4380
     cttccttatt tgttgtatat tcacatgtaa ttaaaccttg taaggctaga cataggctaa      4440
     aatacctttg taaaatactt gtcacacatg ctataataat tgtatatttg tcaattatgt      4500
     atatcacaat ttatatgtat tcactgacga tgcctcatac aacaacagtt gttcacaggc      4560
     taatatatga atcaataaat caataa                                           4586
//
ID   Daphne-7_HMM repbase;    DNA;    INV; 3590 BP.
XX
AC   .
XX
DT   15-FEB-2013 (Rel. 19.10, Created)
DT   15-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-7_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3590
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2790-2790 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 5' is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..3133
FT                 /product="Daphne-7_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVVENIIDDFEETLTSHSQLCSPEQCDQFLQYTNGIK
FT                 IFHVNIRSISCNFDSLLLLLKRISFQVDILVLSECWLSKVSVLPALPGFNF
FT                 FMTGHTNQNDGVVVYIRNNVYCEVTEPNIREANCLQIVLSSTFVIVALYRP
FT                 PSYKCINTFLHSLDNILTSLTKFKTLVIIGDININIRSPISDSRTDEYLNL
FT                 CAIHGLVPAHSFPTRNDNCLDHIIFRSHKSSATYVLDAPFTDHCPICICCE
FT                 NTDKTLCTDVTANSVTYVDEPAVISTIEKLEFTDILNSNDPEEAAERLVST
FT                 LSSIIQNYTCTRLSSCRKRILKPWITPGLLRCIRNRDKLYKKTKKEPNNAI
FT                 AKITYTRYKNFCNNLLKKIKTNYERNEFYKANKNTKRTWNVIKKITNLTND
FT                 NTKASNSLLNIANNPIDAVNNVNDYFASIGEKLASGVRIRDISEQHLPFVI
FT                 SQRTPNSMFINCTNDSEIKSIIYGLKSHCAVGWDKIPSSILKATAEILTPS
FT                 ITWVCNLCLSQGKFPKVFKKAVVHPIHKKGSKDSLNNYRPISVLSTLSKIL
FT                 EKLINKRLVSYLNKYDLLAANQYGFRAGKSTEDAVMSLVDNVVQKLDSKKR
FT                 ALGIFLDLSKAFDTVSLPLLFKKLESIGIRGIALDLFRSYLTDRTQFVVIN
FT                 GNISDDANLSYGVPQGSVLGPTLFLIYINELCNLVIPNCKIISYADDTAML
FT                 IYGSTWADTLMYSEKAFSIVSSWLSRNMLTLNLDKTQFITFGYKLSLPSES
FT                 FSITAHTCSYELYQACNCSKITRSRCIKYLGVLIDESLSWKNHIQALASRI
FT                 RKLTFIFKQLRSSASLEVLKMIYYALVQSLLTYCIPAWGGAIKTTLLSLER
FT                 VQRCVLKVILSKPVRFPTEDLYKSCKVLTVRQLFVLCSVLRKHRATSFDAQ
FT                 YMLNKPRSNKICQIELRHKASSNRHHYYLSPTLYNAINNKITIYPLNSHQC
FT                 KMKLSNWLLNLNYDQTEDLLAT"
XX
SQ   Sequence 3590 BP; 1189 A; 676 C; 555 G; 1167 T; 3 other;
     ttacaaatac acgacataca catatatcgt taatttacag tctcgaaagc ttcagggtct        60
     tagctagttt gtgttgcgat aatttaccag taaatattag actattgtta attactccta       120
     ctaacataat gaggagagta gaagtatgac cagaaactct aagatgtgtt atattgaacc       180
     tgtgtttatg ccaaattaaa caatggtggt cgaaaatatt attgatgatt ttgaggaaac       240
     tttaacatct cactctcagc tttgttcccc tgagcaatgt gaccaatttt tacaatatac       300
     aaatggaata aagatctttc acgttaacat acgtagcata agctgtaact ttgactcact       360
     cttgcttttg ctaaagagaa ttagtttcca agttgatatc ttggtgcttt ctgagtgttg       420
     gttgagtaag gtttccgtgt taccagcact gccaggcttc aatttcttta tgacaggtca       480
     tactaatcaa aatgacggtg ttgttgtata tattagaaat aatgtgtatt gcgaagttac       540
     tgaacctaat attagggagg caaattgcct tcaaattgtt ctttcttcga catttgttat       600
     tgttgctcta tatcgtcctc cttcgtataa gtgtattaat acttttttac atagcttgga       660
     caacattttg acttcattaa ccaaatttaa aacattggtt attataggtg atatcaatat       720
     taatatacgt agtccaatat ctgactcacg tacggacgag tacttaaacc tttgtgcaat       780
     acatggtctg gtaccagctc actcttttcc cactagaaat gataactgtc tagatcatat       840
     aatcttcaga agtcataaaa gttcagctac atatgtattg gacgctccat ttactgacca       900
     ttgtcctatt tgcatttgct gtgaaaatac ggacaaaact ttatgtactg atgtgacagc       960
     aaattctgtc acatatgtag atgaacctgc tgttattagt actatcgaaa agctcgaatt      1020
     tactgatatt ttaaacagca atgatccaga agaagcggct gagagactgg tgtccacttt      1080
     gtcctccatc attcaaaatt atacatgcac caggctgtct tcatgtagga agcgaattct      1140
     aaaaccatgg ataacccccg gtttactccg ttgtattcga aaccgcgata aactttacaa      1200
     gaaaacaaag aaagagccta ataacgccat tgccaaaata acttatacac gctacaaaaa      1260
     tttctgtaat aatctattaa agaaaataaa aactaattac gagaggaatg aattttacaa      1320
     ggctaacaaa aatacgaaaa gaacttggaa tgttattaaa aaaataacga atctaactaa      1380
     tgataacact aaggcttcaa atagtctgtt aaatattgct aacaatccaa ttgacgcagt      1440
     gaataacgta aatgattatt ttgcaagtat aggcgaaaaa ctggcttccg gtgttcgtat      1500
     tagggatatt tcagagcaac atctgccttt cgtgatatcc cagagaacgc cgaattcgat      1560
     gtttattaac tgtactaatg attctgaaat aaaatctatt atatacggtc tcaaaagcca      1620
     ttgtgcagtg gggtgggata aaataccgtc ttctatcctt aaagctactg cagaaattct      1680
     tactccttca ataacttggg tttgtaatct gtgcctttct cagggcaaat tccctaaagt      1740
     ctttaaaaaa gctgtagttc acccaatcca caaaaaaggg agtaaagata gtcttaataa      1800
     ttacagaccc atatctgtgt tgagcacact ttccaaaatt ctcgaaaaac ttatcaacaa      1860
     aagactagtc tcttatttaa ataaatatga tttgcttgcg gctaaccaat atggctttag      1920
     agctggtaaa tctacagagg atgcagtcat gagtttggtg gataacgtag tacaaaaact      1980
     tgacagcaaa aagagggctc ttggtatatt cttagatctt tcaaaagcct tcgatacggt      2040
     gtctctgcct ctactcttca aaaaattgga aagtatcggt atcagaggta ttgccttaga      2100
     cctctttagg agctatctga ctgacagaac gcaattcgtt gttataaatg gaaatatcag      2160
     cgacgatgca aatctttcat atggagtacc ccagggtagc gtactgggac ccactctctt      2220
     tttaatatat attaatgagc tctgtaattt agtaataccc aactgcaaaa tcatctcata      2280
     cgcagacgac accgctatgc ttatttacgg tagtacttgg gctgacacac ttatgtatag      2340
     tgaaaaggct ttttccattg ttagtagctg gttatcacgt aatatgctaa cattaaattt      2400
     agataaaact caatttataa catttggtta taagctttcc ttaccctctg aatcgttctc      2460
     cattactgct catacatgtt cctatgaatt atatcaagcc tgtaattgct ctaaaataac      2520
     ccgatctcgt tgtattaagt atcttggtgt ccttatcgat gaaagccttt cttggaagaa      2580
     ccatatacaa gctctagctt ctcgtatacg aaagttaaca ttcatcttta agcaacttag      2640
     atctagcgct agcttagaag tactaaaaat gatttattac gcccttgtgc aatcattact      2700
     aacttattgc ataccggcat ggggcggagc tatcaaaacg actctgcttt cacttgaaag      2760
     agtccaaaga tgtgtactta aagttatact atccaaacct gttcgtttcc caacagaaga      2820
     tttatataaa tcatgtaagg tgttaacagt ccgacaattg tttgttcttt gctctgtttt      2880
     acgaaagcat cgagctacct cctttgatgc tcagtatatg ctcaataaac ctagatctaa      2940
     taaaatttgt caaatagaat tgcgtcataa agcctcttca aatcgacatc attattatct      3000
     cagtcccaca ttatacaatg ctatcaataa taaaataacc atatatccct taaactctca      3060
     ccaatgtaaa atgaaactct ctaactggtt attaaattta aactacgacc aaacagaaga      3120
     tctcctagcc acctaaatga agttaattgt acatatcctt aaccttaagc atacttatcc      3180
     aagcaaggtc tcatacatac atacatacat acatacatac atacatgcat acatacgtac      3240
     atacatacat acacacacac tcgcacacam acatgcatac atatatacac acacacacac      3300
     acacacacat ataagcacat ataaacatta cacacattct aaatttacct aaatattsta      3360
     attctttatt attattattt tattttattt tattttttta tggtcatggt ttwtaatttt      3420
     taattttatt tttcttatat gtataattat gcaattaaat ttgatctatc ttttgaaacg      3480
     acgcttatga ggcgggcgtt aataactgcg acacagtgtc atactactgt agttattacc      3540
     gtcataaact gtttttgtta tgaactacaa ttttttgaaa taaataaata                 3590
//
ID   Daphne-7_LMi repbase;    DNA;    INV; 4558 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4558
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3121-3121 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(459..1319,1285..1785,1789..3867,3795..3986,
FT                 3938..4078,4039..4344)
FT                 /product="Daphne-7_LMi_1p"
FT                 /translation="MESKIDVFGDSHAKGISQELQVISKSSTVTGMVKPGA
FT                 GFKEVTKNIVKYKYGKQDSVVICAGAKDIYENNAMKMYKQLLSLILVLSNT
FT                 NIILVNFXLRHDLPEWSCVNKEIHRINEKLKSCCRLFSNVKLIDSSTLHRE
FT                 CFTKHGLHLNNNGKARLGNLIRDAIKCNSKWTVTELGWYKCPTAETPAQTA
FT                 TAPRSTIQKTVATPTEQPTTEPKLTATSEPTSEVTVKTSKFNQPESSAFTT
FT                 TVAEQTSVAVAPKQITSQPESLAYTATTAVAVVVAAVVTPEEGSHLQQSSH
FT                 QKKAATFEKPGFLLGPGSEQQQIIGKHLNDCNQKNLQQGQLVQEADSNQGR
FT                 ESGNINRTAVSKNSNLKIMHQNIQYASKKSEELEVLLAAEVPNIFIMTEHG
FT                 LKDSELKVFNLEGYKNVAYYCRNEHKSGGVAIFVDSKVGTTPLDISQIAQI
FT                 STLKQQQYKSSWGGKCLIIGIYRSPSSSIENFLLELEVLLQKVMKKYTFVI
FT                 LAGDLNIDMLRDNDCTRRFQDILGSYNLQLHVKSPTRCTETSSTLIDHILT
FT                 NIPTERQKVQVINTVIADHSGQTIELKDYAKAEDKKMIKYRQTNIANLNSL
FT                 EILVKAEEWDDVYNEHSVEKSWESFCDILRHHINVACPVICKTVSAKQNKK
FT                 WITKEIKKAREELIKLYEDYQKDKEQASQEAYRSKKKLYTRMIREAKASQY
FT                 KHEIKTSTNISKTVWNLINDNRKESQTSKDTNIILEMEGVKVTDPLQVANS
FT                 LNQHYVAIVEKLLNQXTPVTKSIKSPKWVAESLYLLPTNELEVSKIIGALK
FT                 NKNTEGLDGISAKIVKHCAKYLATPLTFLINLTMKEGVFPNCLKRSKVVPV
FT                 FKGGDKEDPGNYRPITITTVLSKIVERVINDRIVNFIDKHNILNEAQHGFR
FT                 KGRSTKTAVANFITYITEALEQRRKVSGIYLDLSKAFDCVCHKILLKKLNC
FT                 YGIRGNAADIIKTFAENRQQCVELKHKCRNKEEKVYSEFQQVKYGVAQGSI
FT                 LGPLLFILYVNDMPTEINEKVIMYADDTTLLVCGDTVKDLEKRATENFQMA
FT                 ERYFTENNLLINRKKTKCTKFETKITKSSEVFTLKIGSADLAEVDCNRFLG
FT                 IEVDKHLSWENHIDKVCSKISTNIFLMRKMCYTWTQKPCGLFENKHKYILN
FT                 EKNVLYVDTETLLKMYYGLIFPHLSYGIPLWGGAADVHIQRLLKLQKKAIR
FT                 CCTHTETFKTSKESHQMLAKLSPRESCKNKFKEFKILTVPSLYIYMRQDTN
FT                 CTKSVYIYETIVFLMVNCTAPLNSDIHNHNTRTKEQYHFFSKRLNMTDRDP
FT                 INAGCRFFNKLPLSIRCIKERSAFKRKLKEHLISGCWYKVKEYLTENL"
XX
SQ   Sequence 4558 BP; 1847 A; 762 C; 858 G; 1087 T; 4 other;
     ggcggctagc gtgaaaatac ggaatgtgac tccgcgaaaa aacgtgaatt ttagtgttaa        60
     aaataaacag tgtgtaaatt gtaaagccga aattcaaagc taaatgaacg tgtgtccagt       120
     ttacagctta ttatcagcgc actgaagatg gatattacga aacttaaaga tgaaatcagt       180
     gaactaaaca catcaagatc gcgccatgat atttcgactc tgtcggaaaa gttggcggaa       240
     gtaaagttaa aggatgcaaa caaaaagtga aaaagcaaga aaacagtgaa acaaagaaaa       300
     ktgtagtgca cgaaaattac ttccaggttc ttacagatac ggtttgtgat atcgctgtga       360
     caaatgcaag taggccaaaa caacataaaa aacaaaacga atccgtaaaa aacaatcaaa       420
     gtgcaaataa acaaaatsta atacaagtga cagaaaagat ggaatcaaaa atcgacgttt       480
     ttggagacag tcacgccaaa ggaatttctc aagaactgca agtgatcagt aaatcatcaa       540
     cagttacagg tatggtaaaa ccaggtgctg gtttcaaaga agtgacgaaa aacatcgtaa       600
     aatataagta tggcaagcag gacagtgttg taatttgtgc aggagcaaaa gacatttacg       660
     aaaataatgc catgaaaatg tataaacagc tcttgagtct tattctagta ctatcaaaca       720
     caaacattat acttgtgaac tttcmtctca ggcatgattt acctgaatgg tcatgtgtaa       780
     ataaggaaat tcacagaatt aatgagaaac taaaaagctg ttgcaggcta ttcagtaatg       840
     tgaaattaat cgactcaagc acacttcata gagaatgttt tactaaacat gggcttcacc       900
     taaacaacaa tgggaaagcc aggctaggaa acttaataag ggatgcaatt aaatgcaatt       960
     ccaaatggac agtcactgaa ctgggatggt ataaatgccc aacagcagaa acaccagcac      1020
     aaacggcaac agccccccga tctaccatcc aaaaaacagt agcaacacca acagagcaac      1080
     ctactacaga accaaaatta acagcaacat ctgaaccaac atcagaagtg acagttaaaa      1140
     catccaagtt caaccaacca gaatcatcag cattcacaac aacagtagca gaacaaacat      1200
     cagtagcagt agctccaaaa caaataacaa gccaacctga atcactggca tacacagcaa      1260
     ccacagcagt agcagtggta gtagcagcag tcgtcacacc agaagaaggc agccaccttt      1320
     gagaagccag gatttttgct ggggccaggc agtgaacaac aacagataat agggaaacat      1380
     ctaaatgact gcaatcagaa gaatctacaa caaggtcaac tagtacaaga ggctgattcc      1440
     aatcaaggta gggaaagtgg caacataaat agaacagcag tttcaaaaaa ctccaattta      1500
     aaaataatgc atcaaaacat tcaatatgca tctaaaaaat cagaagagtt agaagtttta      1560
     ctagctgctg aagtacctaa tattttcata atgacagaac atggtttaaa agatagtgaa      1620
     ttaaaggttt tcaatctaga gggatacaaa aatgtagcat actattgcag aaatgaacat      1680
     aaaagtgggg gagtagcaat ttttgttgac agcaaagtgg ggactacacc cctcgacata      1740
     tcccaaattg cacagatttc tactttgaag cagcagcagt acaaataaag ttcatggggg      1800
     ggaaaatgcc ttataatagg aatataccga tcaccaagct ctagcattga aaacttttta      1860
     ctggaattag aggtactact tcagaaagtc atgaagaaat atacttttgt aatattagca      1920
     ggtgacttaa atatagatat gctaagagac aatgactgca caagacgttt tcaagacata      1980
     ctggggtcat acaatctcca gttgcatgta aaaagcccaa caagatgtac agaaacatca      2040
     agcacattaa tagatcatat ccttacaaat atacctactg aaagacaaaa agttcaggtt      2100
     ataaatactg ttattgcaga ccattccgga caaacaattg aactgaaaga ttatgcaaaa      2160
     gctgaagaca agaaaatgat aaaatataga caaacaaata ttgcaaattt aaatagccta      2220
     gaaattttag taaaagcaga agaatgggat gatgtgtata acgagcacag tgtagaaaag      2280
     agctgggaat ctttctgtga tatactaaga caccacataa atgtggcttg tcctgtaata      2340
     tgtaaaactg taagtgccaa gcaaaacaaa aaatggatca ccaaggaaat taaaaaagca      2400
     agagaggaac tgattaaact ctatgaagat taccagaaag ataaagaaca ggccagtcaa      2460
     gaggcttaca ggagcaagaa gaaactgtac acgaggatga taagagaagc aaaggctagc      2520
     caatataaac atgaaataaa aacttctaca aatatttcta aaaccgtctg gaacttaata      2580
     aatgataata gaaaagagtc acagacctca aaagatacaa atataatact ggaaatggag      2640
     ggggttaaag tgacagaccc actacaagtg gcaaatagct taaatcagca ctatgtagct      2700
     atagtggaga aactactaaa tcagaamacc ccagtaacaa agagcatcaa aagtcctaaa      2760
     tgggtggctg agagtctata cctactccct acaaatgaat tggaggtttc aaaaataatt      2820
     ggtgcactaa aaaataaaaa tacagagggt ctagatggca tatcagcaaa aatagtaaaa      2880
     cattgtgcta aatatcttgc aacacctttg acattcctga taaatctaac aatgaaggaa      2940
     ggagtttttc cgaactgttt aaaaaggagc aaggtagtgc cagtttttaa aggaggtgat      3000
     aaagaagatc ctggaaacta tagaccaatc acgatcacaa ctgttctgtc taaaatagta      3060
     gaaagagtga ttaatgatag aattgtaaat ttcatagaca aacataacat cttaaatgaa      3120
     gctcaacatg ggttcagaaa ggggagatca actaagacag cagtggcaaa tttcataaca      3180
     tacataacag aggccctgga acaacgaagg aaagtgtctg gtatatactt agacctttcc      3240
     aaagcctttg attgtgtctg ccacaaaatt cttctaaaaa aactaaactg ttatggcata      3300
     agaggaaatg ctgcagacat tataaaaaca tttgctgaaa acagacaaca gtgtgtggaa      3360
     ttaaaacaca aatgtaggaa caaagaagaa aaagtatatt ctgaattcca gcaggtaaag      3420
     tatggggtag ctcagggttc gatattagga cctctgctct tcatactgta cgtaaatgat      3480
     atgcccactg aaataaatga aaaagtaata atgtatgctg acgacacaac tttgttagta      3540
     tgtggtgaca cagtgaagga tttggaaaag agagccactg aaaacttcca aatggcagaa      3600
     aggtatttta cagaaaataa tctactgatc aacagaaaga aaacaaaatg tactaaattt      3660
     gaaacaaaga taacaaaaag ctcagaggtt tttacactga agattggcag tgcagaccta      3720
     gcagaagtgg actgtaatag atttctggga atagaggtgg acaagcatct gtcatgggaa      3780
     aatcacattg ataaggtttg ttcgaaaata agcacaaata tattcttaat gagaaaaatg      3840
     tgctatacgt ggacacagaa accctgttaa aaatgtatta tggacttatc ttcccacact      3900
     tatcatatgg tataccacta tggggaggag cagctgatgt acacatacag agacttttaa      3960
     aacttcaaaa gaaagccatc agatgctagc caaactatca ccaagggaat catgcaaaaa      4020
     caaatttaaa gaatttaaga tactaactgt accaagtctg tatatatata tgagacaata      4080
     gttttcctaa tggtaaactg tacagctcca ctaaacagtg atatccataa ccacaataca      4140
     agaactaaag aacaatacca ttttttcagc aaaaggctaa acatgacaga tagggatcct      4200
     ataaacgcag gatgcagatt cttcaacaaa ctgcctctta gcatcaggtg cataaaggaa      4260
     cgtagtgcct tcaaaagaaa attaaaggaa catctcatct ctggatgctg gtataaggtg      4320
     aaggagtatt taacagaaaa tttgtaattt aaaggtgaac tgatgtagtg ctggaaacag      4380
     agaagtggac tgtgtctttt cactaaattt ctaatactta aataccacat gttatattta      4440
     taaatgataa atttgtaaaa ttttctttct ttcttatgtt atataaaatt aacaacatga      4500
     cttgtgtcta atatcattgt aaatatgatc tacagacaaa taaattatta ttattatt        4558
//
ID   Daphne-80_LMi repbase;    DNA;    INV; 2657 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 20.01, Created)
DT   07-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-80_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2657
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 128-128 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2657 BP; 1005 A; 529 C; 428 G; 691 T; 4 other;
     tgaacttcag tcactgttat gtgtctctca gaacactggc taaagtcaga tgagatacat        60
     tcattttatg tacctggcta cactattgca aattactttt gtagaagtaa gcacaaaaat       120
     ggaggaactg caatatttta gaagaggctt ggaatacaaa attgttgaaa atttccaaca       180
     cagaaataga ttttgatgca acagtcaatg aagttagtct tacaaaaaca gttatataca       240
     tctaccgatc gcctgatggg aactttgagt catttctcaa taaattagaa acattactaa       300
     atggaataca tgtagataag aaaacaacaa tattatgtgc ggatttcaac attgagttct       360
     tgtagcaatt aggagtaaag aattattaat caacataaca gatacttttg atctaaaact       420
     aacagtaaca accccaacaa gaataacaaa aacaacagct acaaccccag accaaatatt       480
     tgtaaacgca agttgctgtg taaaagttct taagacaagt tttagtgatc atgtgcccaa       540
     gtgataaccc tctcagacta tccactgccg taccaaaccc ataaaaaact gttactgcaa       600
     gaagatttca cacagagaac ttagacacat tcaatcattt attagcagga gaaaattggg       660
     atgaagttac tcagctgcat gacaccaaca aaaagtttga aaagttctct aacatttcaa       720
     aaataattat gaaaaagcat ttactctcat aaaccgggtg ctaaggaata caaccacaaa       780
     agcgaagaaa tggataacaa gaggcataag aagctcaagc atcacaaaaa gaaacttgct       840
     catttacaac aaaacccaca ctatatcccc catcatgaac aattacattc aaatatatag       900
     gaaagttatg aaacaggcaa aaataatgcc caatgacatg atcataacag attcagaaaa       960
     gaaaagcaga gtaatctgga aagtaatgaa tcaagaagaa gacaggagaa aagaaaatat      1020
     caccccaaac tgtgataaca atagaataac tgacccccaa cagattgcat atctcttgag      1080
     acagtactat gcagacaata caaaaaatct tataatgaat aaccgtagaa atagcacgat      1140
     caaccaccaa agcagagtaa attattgcct tcagtcaatc tatctctatg aaacaacccc      1200
     aaatgaaata atatgtggag caaaatgctt caataacatt ttctggaata gatgacattc      1260
     cggaaaaata aatctacaac tagtgccaaa tacaattttt tacaaaatgc tctagaagca      1320
     gttgacaata aacaaaatgc tgctagtaag taaggctttt gacatcttag agcacaaaat      1380
     tctgttagaa aaactccaaa agtatggctt tagaggcaca cctctagaat ggttctcttc      1440
     atacctaaaa aatcggacac agaaagtgat gataacccat gatctaaatg gcagctctag      1500
     aacttgtttt tcagatacag gtgaaattac aagtggagta cmccaaggat scataccagg      1560
     gcstatcctt ttccttctgt wcataaatga cctagatcta agtattgact ctcatataaa      1620
     tacgttattt gcagatgaca ccagcctcct cctcacaggg aaaacccctg gagaactaca      1680
     aacaaacata aacaaagtta cagatcagct aaatgattgg tttgaaggaa ataaacacat      1740
     caaaaacaac atttctaaat ttctgcttaa agggagaagc ttcagctcct cagtgataat      1800
     aaactccagt gatattacac catcactgga aacaaaattt ttaggcattt ggcttcaaca      1860
     tgattttaaa tggcacacac acataaaaca actgcaacac tgaagaaggt atgctacagc      1920
     ctatgtctac ttgcacacag agcaagtttt cccacagttc gaattgcata ctttgcccaa      1980
     ttccacagtg ttctacagta tggggtcata ttctggggta gtgcagctgc tagctcagtc      2040
     atattcctga ctcaaaaaag agctattaga gcaatgctcc atgcacgaca aacagattcc      2100
     tgcaggcctc tcttccgtaa atcttcaatc ctcccactcc cctgtgtctt tatcctagaa      2160
     acttgcaaac atgcaaggaa aaatctaaca gagttaaaca aaaatctgag tgtacatgac      2220
     catgacacta gacaaaaaga acatcttcat gttcagtcag taaggacagc agccttcaaa      2280
     tcctccacta caaatcgtgc tacacaaata tacaatagtc ttccacagaa aataaaactt      2340
     agtccttcat tttcactatt ctgtaaatcc ctaagggcat tcttattgga tcactgcttc      2400
     tattcagtgg cagaatttct agatcacatg aagtacaata aacttgaatc aagactgtgt      2460
     aaaaacaact actgctccta aagcacgacc aaatggaatt aatctgttgc actagtgaaa      2520
     gacattttga tgttacatgt aatatcagtg tatgtttgtg tgtgtgtgtg tgtgggcgca      2580
     cgtgtgtgtg catacgtgca cacatgcaac catcccataa tctgtaaaga ttttctggat      2640
     gaataaagaa tttgaat                                                     2657
//
ID   Daphne-81_LMi repbase;    DNA;    INV; 4094 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 20.01, Created)
DT   08-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-81_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4094
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 200-200 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(366..641,645..842,727..2805,2992..3120,
FT                 3099..3332,3375..3773)
FT                 /product="Daphne-81_LMi_1p"
FT                 /translation="QRLIYSTWTTPECSWQRSNGQKATKIIIANRKGNKTA
FT                 IALKWKETVADKVLVYTDNENNSAQRTTESLEVNHVSEDSTTTQENMIQRE
FT                 QGKSQNQLMEQERKHLTRKKTQLQQQVVQIINRLQNNQQVEYGGQQEERIS
FT                 YQRTRIFGGINGYSTEGSSTGCKTTSRWNTAVNKKKESATKGPGFLVGSTA
FT                 IPQKEAVKVSQQTDQVCDYHNADNHNVPGLKTLTEPTMSKTVLNISQMTTD
FT                 KDKLITFLQINICCIRNKLLELEHLCNVENVDIICISEHWLSQEQVNVFVP
FT                 QGYVVGDIICRKQRKNGGAGIFVKEGVKFSKIDLSSYCSELDGEFSCVKLL
FT                 NENIVVVSLYRSPDGDVNLFIEKCELVVRNILRGKTRIAVCGDFNIEMANT
FT                 QRQVSRTFINMLRSLDLYCTNNRATRKNACLDNIVVNFHREDFTVRLAGGG
FT                 PADHEPILLTLYKSKPVRPNIEEPKVVLIRGQKEEHIRMFSDKLSSANWDF
FT                 VYDCQPGKRGAEMNFDNFFKKYIDLWYSCSPIRKIKHPHTPKYKRLNWFTK
FT                 ELAEIRGNMLLLFNMHKNTYPQKTEKSENIYRSYLKCKKXYKARLILAKKL
FT                 AVENYIENAPNKCKAAWQIIKQENSPNYTQTPLLDPEVLNHYFLNSVKEIE
FT                 NSIETTNSVAMDMVGAPQSAEQVFHWSAITSGDIIKAVSKFSSSKSMDCYW
FT                 LSNYLIKKTIHSISAPLAFIFNKCVEFGVFPDTLKVSKVVPVFKKGDKQLP
FT                 QSYRPVSIVPIFSKIFEALLHTQISSYFERYSILCDSQFGFRKGRNTTGAV
FT                 LEIIDQTLAAFEGNNMVSLVLCDLSKAFDCIPVNILLRKLEFYGVREAHHD
FT                 TYYHTPEQQDLTKLTKENLDRALDWFSANKLLCNPIKPNNCPNKTQQLLMG
FT                 MSNEVENKSAILLGIHIDSKLGWEEHVNHVCKKISRVAYLIMKLREVVSVE
FT                 YLRVTYLGCFSPIFHMVNYKKKVLRIMCKRGRREHCRPIFIKLRILTIINL
FT                 YIYVSVLYIKNNISEFVARGQIHEHNTRAKNNLDIPRHRLSRTRNSHKVNP
FT                 LIFFNKLPAYARSMDINMFKLKWYSWLSDHPFYDIKEFLEMPEQDINI"
XX
SQ   Sequence 4094 BP; 1503 A; 702 C; 763 G; 1123 T; 3 other;
     ggcagagacg gcaagaaaca ttttaaacat agtatcagat gtatatgaaa ttgaaggtaa        60
     agtaatgcca ggtgcaccaa ctagcgtaat attacaaaat tctgaactgc aaaagttgac       120
     aaataaagat ttcgcagtta tctgggcagg gctaatgatg tagcaaaaat gaagccaaca       180
     ttggcaattc ttgtctccaa aaaaccttgt ctacattaca gaacacgaat gtaattgtaa       240
     ctggagtgcc acacagacat gacctacctt aatggtcgtg tgtaaataaa gaaattcgtt       300
     cacaatagaa agctaacaaa aatatgaagc tttcacaatt cttgttttat taatactcct       360
     agtgacagag acttatatac agcacatgga ctacacctga atgcagctgg caaagaagta       420
     atggccaaaa ggctactaaa atcataatag caaataggaa aggcaacaaa actgcaatag       480
     cactgaagtg gaaagaaacc gtagcagata aagtattagt gtacacagat aatgagaata       540
     attctgcaca aagaacaaca gaatccttag aagtgaacca tgtctctgag gatagcacta       600
     ctactcagga aaatatgata caaagagagc agggcaaaag ttagcagaat cagttgatgg       660
     agcaggaaag aaaacacctt acaagaaaga agacccagtt gcagcaacaa gtagtccaaa       720
     ttataaacag gctgcaaaac aaccagcagg tggaatacgg cggtcaacaa gaagaaagaa       780
     tcagctacca aaggaccagg atttttggtg ggatcaacgg ctattccaca gaaggaagca       840
     gttaaagtga gtcaacaaac agatcaggta tgtgactatc acaatgcaga caatcacaat       900
     gtgccaggac taaagacatt aacagagcct acaatgtcaa aaacagtgtt gaatatctct       960
     cagatgacta cagataaaga caaacttatt acttttttac aaattaacat atgttgcatt      1020
     aggaataagc tactagaact agaacatttg tgtaatgtgg agaatgtaga tattatatgt      1080
     atatctgagc actggttaag ccaagagcaa gtaaatgttt ttgttcctca gggatatgtt      1140
     gtgggagaca taatatgtag aaaacaaaga aagaatggtg gtgctggaat ttttgtcaaa      1200
     gaaggagtaa aattttccaa aattgatcta tcctcatatt gttctgaact tgatggagag      1260
     ttcagttgtg taaaactatt aaatgaaaat atagtggtag ttagtctgta taggtctcca      1320
     gatggtgatg ttaatttgtt tattgaaaaa tgtgaattag tagttagaaa tatcctgagg      1380
     ggtaagacta gaattgcagt ctgtggtgat tttaacatag aaatggcaaa cacacaaaga      1440
     caagtatcaa ggacattcat taatatgcta agatcgttag acctctactg tacaaataac      1500
     cgtgccacac ggaagaatgc ctgcctagac aacattgttg ttaacttcca tagggaagat      1560
     tttacagtca gacttgcagg agggggacca gctgatcatg agccaatact cctcacactc      1620
     tataaaagca aaccagttmg gcctaatatt gaagaaccca aagtagtact cattagaggg      1680
     caaaaggaag agcacataag aatgttcagt gacaaattaa gtagtgcgaa ctgggacttt      1740
     gtatatgatt gtcaacctgg taaaagggga gctgaaatga actttgacaa cttctttaaa      1800
     aagtatatag atttatggta ttcttgctca ccaataagaa aaatcaagca tccacataca      1860
     ccaaaatata aaaggctgaa ctggtttact aaagaactag cagaaatcag aggaaacatg      1920
     ctcttgctat tcaatatgca taagaatacc tatccccaga aaacagaaaa gagtgagaac      1980
     atttacaggt catatctcaa atgcaaaaaa wtttacaaag ctaggcttat tcttgcaaaa      2040
     aagctagcag ttgaaaacta tattgaaaat gcacccaata aatgtaaggc agcatggcaa      2100
     ataataaaac aagagaactc accaaactac acacaaacac ctctacttga tcctgaagta      2160
     ttaaatcatt acttcttaaa ttctgtcaaa gaaatagaaa acagtattga aactacaaat      2220
     tcagttgcaa tggacatggt tggagcacca cagtcagctg agcaggtatt tcattggagt      2280
     gctatcacgt ctggtgatat tataaaagct gtatcaaaat tttcaagctc taaaagtatg      2340
     gattgttact ggttatcaaa ttacttaatc aaaaagacaa tacactccat ctctgctcca      2400
     ttagcattta tttttaataa atgtgtggaa tttggtgttt tcccagatac acttaaggtc      2460
     tcaaaagttg tcccagtgtt caaaaaaggg gacaaacaac ttccccaaag ttatagacca      2520
     gtgtcaattg tcccaatatt ctcaaagata ttcgaggcac tgctacacac acaaataagc      2580
     agctactttg aaaggtacag tatcctatgc gacagccagt ttggctttcg caaggggaga      2640
     aacacaacgg gggctgtctt ggaaattatt gatcaaacct tagcagcttt tgaaggcaat      2700
     aacatggtat cactggtatt atgtgacctt agcaaagcct ttgattgcat cccagtcaac      2760
     atactgctaa ggaaacttga gttctatggg gtgcgggaag cacattagag gttataaatt      2820
     cttacttaag caacagaaaa caatttgtat cagtcagaaa tgtaaattct tccttgatgg      2880
     acatcaatac aggagttcca caaggatcta ttcttggacc cttcttcttc attgtggcaa      2940
     tcaatgattt acccaaaaca taggccaccc agtcgtgtgc tatgctgatg acacgacact      3000
     tattaccaca caccagaaca gcaagatctg actaaactaa caaaagaaaa tctggatagg      3060
     gccctagact ggttttcagc aaataaactt ctatgtaacc caataaaacc caacaactgt      3120
     taatgggaat gtctaatgaa gtagagaata agtctgcaat acttctaggt attcacatag      3180
     actccaaact tggatgggag gaacatgtaa atcatgtatg taaaaaaata tctcgggtag      3240
     catacctcat tatgaaactc agggaggtag tgagtgtgga gtacctcaga gtgacatatt      3300
     tgggatgttt cagtcccata tttcatatgg tctgattata tggggacact cctctcacat      3360
     taagaatatc ttaaaactac aaaaaaaaag tcttacgcat aatgtgtaaa aggggccgta      3420
     gggaacattg tcgtcctatt ttcataaaac taagaattct cacaattata aatttataca      3480
     tctatgtgtc tgtgctctat attaaaaaca acatctcaga atttgttgct aggggacaaa      3540
     tacatgaaca caataccagg gctaagaata acttggatat accaagacac aggttgtcaa      3600
     ggactagaaa ttctcacaaa gtgaaccctc tgatattctt taacaaatta ccagcatatg      3660
     caagatctat ggatataaac atgtttaaat tgaaatggta cagctggcta tctgatcatc      3720
     ctttttatga cattaaagaa ttcctagaga tgccagagca ggatattaac atttaacaat      3780
     tctttgtaat taataatatt tgatttatgt gtattaagts tcatgtaatt gtataccatg      3840
     catgttaaag aattgctata caaatgattt gctacaccat gattacagaa tagtatagct      3900
     taagacatta ttatctaata ctttcctgtg tattttatta tttctatgtt tgaaggcata      3960
     acatgtctta ttggcattag attactgtac ttcattatct tgtacttaat acttcatatt      4020
     gtattatata ttccaatgac gaaaccaata tcattgtaca atgatctatg gtgaataaaa      4080
     ttcttgattc ttga                                                        4094
//
ID   Daphne-8_LMi repbase;    DNA;    INV; 4853 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4853
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3122-3122 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(849..1709,1691..2038,2004..2501,2446..4662)
FT                 /product="Daphne-8_LMi_1p"
FT                 /translation="MIEEQERLICALQVQLKNAEEELGRLRRGRGAGEWEL
FT                 AVGKKVARRRYSDSFTLQVANRFDQLSELSGDEPPVAVGVGSTQQTSAFGK
FT                 PKSVERSLRKKKVLLLGSSHGRGVGQQLQEVLGSEYQVTSIVKPSAGLDQV
FT                 TCNIGDLCRNFSKEDQVVIVGGAGNSLDRDGEYDIGGDLERIATQTGGTNV
FT                 HFVQLFQRHDRPCLNTAVSRVNMGLEKALMTEGMDHIAVVPVETIQRSDFT
FT                 RHGLHLNRYGKGRLAKLIGDSVVGGGGXTHGKIPVVVGVRAAPFLDGCTFF
FT                 RLKTADRYSCLKEVPLRXEPPLTKSKNISNKGITVFHQNIQGIRDKVNEXL
FT                 IDTDSDIIGISEHFLSGVTIQRLPLPGYRLAAFYSRSSLQCGGVAMYVKKR
FT                 FFIGVNRFFKNDFSSESIDFSKHCTEQIFECCAGVVNVNGTKLVIVVIYRS
FT                 PDSDFKMFLPKLELVLGSLYRKYKNLIVCGDFNINCVGDSSRKSQLLDLFN
FT                 SYNMMQTVFFPTRVQGNSSSTIDNIFVHSSLLEGHSVSRIVNGLSDHDAQL
FT                 LILKSICSQTNVKHKYQLLRKGKVFVLKQMLNININYSEKVNPVAIETFLS
FT                 LIKEQEWQDVYSADNADDKYNAFLNTFIMLFESCFPLERSKQGTSSNRQPG
FT                 WLTKGIRVSCRTKRELYQNVRSSQNEDAVAHYKQYCKVLKNVIKNAKSMWY
FT                 AKRIANSRDKIKTIWSVVKEVSGQQQQVEDITSVRSRNVSVTDKLDICAIF
FT                 NNHFLNIVGELNKTLVSTGNHITFLENAFPRLLPEMVLHDTSIGEIESIIK
FT                 SLKTKDSCGYDGVSSRILKYCSPYVSPVLSHICNFSFQNGQFPDRLKYSVV
FT                 KPLYKKGERDNVDNYRPISMPSVFSKVIEKAVYSRLIDHFSSHNLLSNVQF
FT                 GFRSGLTTENAIFSFLCEALDGLNKRLRTLGVFFDLTKAFDCVDHKILLQK
FT                 LEHYGIRGVAHNWFTSYFNNRQQKVILRSVENGYDVQSQWGTIKCGVPQGS
FT                 VLGPLLFLIYINDMPSSITGDCKIFLFADDTSLVVKDVARNIDTVSNNAVQ
FT                 EISSWLVENKLMLNHSKTQFLQFLTHNLTKADILITHNGHMISETEQFKFL
FT                 GVHIDSKLSWKAHVQDLVPKLNSAIFTIRTISEISDFSTRKVVYYAYFHSL
FT                 MTYGIVFWGNSPDAKRIFLAQKRAVRAISGVSSRTSCRPLFSSLGILTLAS
FT                 QYVFSLMSFVVNNISLFPRVSSFHSVNTRQKSNLHLHHTTLTLVQKGVQYS
FT                 AASIFNKLPQELKNLSTNPHAFKSKLKSYLMAHSFYSVEELLEKLNN"
XX
SQ   Sequence 4853 BP; 1442 A; 751 C; 1114 G; 1540 T; 6 other;
     gatctttggc gtgacgtcac agtgctggat gctgtgcaca tcgctctcga ttttttataa        60
     ttttaggatt aatatagtta ttttaattgt tatttcgtga taatattcaa tataaaggtg       120
     ttctagaaaa ggatcgtcag taattttagc gtttgtagtg ccgtattgct ttaagtggtg       180
     ttatttgtgt tcgcgtgtgc ggcaccgacg tcttactgct ttgtttacat ctggtggcga       240
     gtggttccag ccgtagcggt ctccgaaagc taagttccaa taagtgtttg tgttattgta       300
     gttaaattat taaagtgact agattcagga ggtgttatca cgctagttgt ttattaaatt       360
     tagtactttt caacaggtga cttgctgttt ttaacgtagt tgaggttggg aaactttaag       420
     ttacggtatt tgataactct tktactctca ctgtgtttag ttagtttatt agtgacgctt       480
     gaatttgaac ttgtttatac aagcaatagt gtaaagtttc atgtggtagt gttatttgtt       540
     cttttctgat actattagtt gttgttactt gattttgtag agactgaggt ttgttgattg       600
     ctgtagttaa gaggtacttc ctagttcttt tgtagaaacg taacttaata acttagacgt       660
     ctagtttttt aaatattgtg aaattttacc atgagtgaaa aatgtgggct ctgtcgtagg       720
     gtcgtgcgta gtgggctgca gtgtgggatt tgtagtaagt attttcatgg ggggagtgca       780
     gtggggaaga cagtgggcat tgtggtgagg ttctctcctg gaactgtagg atttgcagca       840
     ggaataagat gatagaggag caggagcgtt tgatctgcgc ccttcaggtg cagttgaaaa       900
     acgctgaaga ggaactaggt aggctgagga ggggaagggg ggctggggaa tgggaactgg       960
     cagttggcaa gaaggtagct aggagaaggt attcagatag ctttacattg caagttgcaa      1020
     ataggtttga ccaactgtca gagttgagtg gagatgaacc tcctgtagct gtaggtgtag      1080
     gaagtacgca gcagacctca gcttttggta agccgaaatc tgtagagagg tctcttagga      1140
     agaagaaggt tctgctgcta ggtagttctc atggcagagg tgttggccaa cagttgcagg      1200
     aagtacttgg gagtgagtac caggtcacca gcatagtgaa gcctagtgca gggttagatc      1260
     aggtcacttg taacataggg gacttatgta ggaatttttc aaaagaggat caggtagtta      1320
     tagtgggtgg ggccgggaat agtcttgata gggacggaga atatgatata ggtggtgatc      1380
     tggaaaggat agcaactcaa actggtggca cgaatgtgca tttcgtgcag ctgtttcagc      1440
     gtcatgatag gccttgtctt aatacagctg tcagccgtgt taacatgggg cttgagaagg      1500
     cgctgatgac ggagggcatg gatcacattg cagtggtgcc agttgagact atccaaaggt      1560
     cggattttac taggcacggt ctgcacctca ataggtatgg gaaggggagg ttggcaaagc      1620
     tcataggtga cagtgtagta gggggtgggg gtktcactca tggaaaaatt cctgtagtag      1680
     ttggtgttag ggctgcacct tttttagact gaagacagct gataggtatt cctgcttaaa      1740
     ggaagtccct ctaagaaakg aaccaccttt gacaaagtct aagaatataa gtaataaggg      1800
     aattactgtt tttcatcaaa atatacaggg tatcagagat aaagttaatg aamtgcttat      1860
     tgatactgat tctgacatta ttggtatttc agagcacttt ttaagtggtg tgacaattca      1920
     gagacttcct ttgccaggat acaggttagc tgccttctac tctaggagtt ccttgcagtg      1980
     tgggggagtg gccatgtatg taaaaaaacg atttttcatc ggagtcaatc gatttttcta      2040
     aacactgcac agaacagata tttgaatgtt gtgcaggagt tgttaatgtt aatggaacta      2100
     aactagtaat agttgttatt tatagatccc ctgactcaga ttttaaaatg tttctgccca      2160
     agctggaatt ggttctgggt tcactgtata ggaagtataa aaatttaatt gtgtgtggag      2220
     atttcaacat taattgtgta ggtgatagct caaggaaaag tcagctgtta gatctattta      2280
     attcctataa catgatgcaa acagtatttt ttccaacgag agtgcaagga aatagcagtt      2340
     ctaccattga caatattttt gttcattctt cattattaga ggggcactct gtcagcagaa      2400
     tagtaaatgg cctatcagac cacgatgccc aacttttaat tctaaaaagt atttgttctc      2460
     aaacaaatgt taaacataaa tatcaactac tcagaaaagg ttaatccagt tgcaattgag      2520
     acctttttaa gcctaattaa ggaacaagaa tggcaggatg tttatagtgc tgataatgca      2580
     gatgataaat ataatgcttt tctgaacaca tttattatgc tgtttgaaag ttgctttccg      2640
     ctagaacgct caaaacaggg tacttccagt aacagacagc cagggtggct gacaaagggg      2700
     ataagagtat catgtagaac aaagcgggaa ttgtatcaaa atgttagaag cagtcagaat      2760
     gaagatgcag tagctcatta caaacagtac tgtaaggttc tgaaaaatgt cattaagaat      2820
     gcaaaaagta tgtggtatgc aaaaagaata gcaaactctc gggataaaat taaaactatc      2880
     tggtcagtcg tgaaggaagt gtctggtcag cagcagcagg tagaagatat aacgtcagtg      2940
     cgtagtagaa atgtttctgt tactgacaag ttagatatat gtgcaatatt caataatcac      3000
     tttctgaata tagtaggkga actaaacaaa accctagttt ctacaggtaa tcatataaca      3060
     tttttagaaa atgcctttcc gaggctgtta cctgaaatgg tccttcatga tacttccata      3120
     ggggagattg agtcaataat taaatcacta aagactaagg actcttgtgg atatgatggg      3180
     gtatctagca gaattctaaa gtactgttct ccatatgtta gcccagtact aagccatatt      3240
     tgtaattttt cctttcagaa tggtcagttt cctgacagat taaagtactc agtagtgaaa      3300
     ccactttata aaaaaggaga aagggataat gtagacaact atagacctat ttctatgcca      3360
     tcggtttttt ctaaagttat tgaaaaggct gtatattcaa gattaattga tcatttcagt      3420
     tcacataatt tgttgtcaaa cgtacagttt ggttttagaa gtggtttaac gactgaaaat      3480
     gctatatttt cgtttctctg tgaggcactt gatgggttaa ataagaggct acggacatta      3540
     ggcgtcttct ttgatttaac aaaagcgttt gattgtgttg atcacaaaat attgttgcag      3600
     aagttggaac attatggaat acggggagta gctcacaact ggttcacctc ttactttaat      3660
     aatagacaac agaaggtaat tctccgcagt gtagaaaatg gctatgacgt acaatcscaa      3720
     tggggcacaa ttaagtgtgg ggtgccccag gggtctgttt tgggaccatt gctgtttctt      3780
     atttatataa atgatatgcc ttcgagtata acaggtgact gtaaaatatt tttgtttgct      3840
     gatgatacca gcttggtagt gaaggatgtt gctcgtaata ttgacacagt atcaaataat      3900
     gcagttcaag agataagttc atggcttgta gaaaacaagt tgatgttaaa tcacagtaaa      3960
     actcagtttt tacaatttct aacacataat ttgacgaaag ctgacatttt gattacacat      4020
     aatgggcata tgataagtga gactgaacag ttcaaatttc taggtgttca tatagacagt      4080
     aagctgtcat ggaaagccca tgttcaggat cttgttccaa aactaaattc tgctatattt      4140
     accattagaa caatatctga aataagtgat ttttcaacac gaaaagtagt ctattacgct      4200
     tactttcact cacttatgac gtacggcatt gttttttggg gtaactcgcc tgatgcaaaa      4260
     aggatatttc tggctcaaaa acgggcggtt cgagcaatat ctggtgtaag ttcacgaacg      4320
     tcatgtcgac cccttttcag tagtctggga attttgacac tggcgtcaca atacgttttt      4380
     tctttaatgt cgtttgttgt taataatatc agcttattcc cacgagttag tagctttcac      4440
     tcggtgaata ctagacagaa gtcgaatcta catttgcatc acaccacctt gacacttgtg      4500
     cagaaaggtg tacagtattc tgcagcatcc attttcaata agctgccaca agaactaaag      4560
     aatcttagca ctaacccaca cgctttcaaa tctaaattga agagttacct catggctcac      4620
     tccttttatt ctgtcgagga actcctagaa aagttaaaca attaagctaa ttcatttttt      4680
     tctttattga ttcttttcac tttgtcttaa gattgtcgtg tgcataggac tacttaaaaa      4740
     ttttctatta ccattcttgt gtaaaaatta atgtattgac ttgttccatg accatggagt      4800
     ctcactcctc aattgggtcc tatggaacag aaaaaacaat aaataaataa ata             4853
//
ID   Daphne-9_LMi repbase;    DNA;    INV; 4467 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 19.11, Created)
DT   10-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Daphne-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4467
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3123-3123 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(680..1330,1291..1464,1439..2041,1921..3291,
FT                 3237..3647,3593..4228)
FT                 /product="Daphne-9_LMi_1p"
FT                 /translation="MKNSGALNELSKNDTVIIMGGSNDVYRNEGKHATRCL
FT                 KKTLHDLKVPKVVVTSMPHRYDLQDNSIVNVELTKINRQFSKICKCFQNVT
FT                 FFELPSSRDLFTKHGLHYNNAGKALIGKMLTKLIQKVDHDTRNPIAIQPAS
FT                 IMKYEITKTTWKKKTVAAPTILSSVEEVPVPPESATARKSEKPIGRKVVSE
FT                 SIGKKTATLHHPNDFLYQVKRNENPTRFFISSEEKRKSYKVRSAQCFSSFL
FT                 TVFHQNVQSLSNKLNELQILLENDIKKTFCIMYNKKPSVLCITEHHLNKEK
FT                 LHMVSFPNFVLGSYFCRKQYNCGGSCIYIKNGIDFKCINYLEKLSVEKDFE
FT                 VNGIEITNEKIVIICLYRAPTGDISILLKKLENILYKITQQNRKVIICGDF
FT                 NIDCGEESKHRTDLLNLLSTFNLKATVKTPTRVTKTTATILDQIFTNVPME
FT                 YTLQTFNTGFGDHSAQEIQIRLENSLFQLSTPNIYKCAHGIHTTNFQHRFW
FT                 GPLSPRNSNKTREQLISTQHLTTTFRKYNEQNIQYFLYCLTKETWEKVYEC
FT                 KNTNDKYNTFISTFCHYFELCFPLESKTVTKSDRKVKWITTGIQVSAKKKR
FT                 LLHEISKQCTTSPEFDSYFKNYKKILTKVIKEAKRMANSSFIKNAPNKMKA
FT                 TWDVVRQETGVKLRQHENFKLKENSSVISNPQQIANKFNSYFTEIASSLVK
FT                 QNSQNDTITSQTKTSRSSNSLFIYPTDEKEMLKIIGELKSKSSYSVDNIPD
FT                 HIIKKCAPLITKPLVDICNNSLSEGIFPEKLKIAKVKPLYKKGEKTNIENY
FT                 RPVSLLSVFSKIIEKIFYKRLIGFIEKHKLLSATQHGFRKGKSTETAIIDF
FT                 LNEALNSIDKKEHIVAMFLDLSKAFDIINHSLLLSKLENMGIRGPAYEWVQ
FT                 SYLLNRQQVVEVVHKNGKTYNHTIHRNVVSSAQKWENIQSYYSQKCCIKYG
FT                 VPQGSVVGPILFLLFVNDLEPLTPNQKYIKYADDTNILIKGGTLEELQNEI
FT                 KECTSHLSEWFSANNLIINTQKTITMNLHTIQNKQNLTPTIELLSKTLESV
FT                 NATKFLGVWIKMTNTRICKCYQISWGLDQDDLRWNNHIQYTCSKLNSICYG
FT                 IKILAGCTSMQVLKTVYYAQVESQLRYGLICWGNSPPSKSCFIAQKRIIRA
FT                 MVGAAPRFSCKPLFKKLCILPLPSLYILEVVVFIRKILDSENKLVPTNHSI
FT                 HTYNTRKHRDIHVQFARTTLKQKGPLQAGTKLYNKLPKNIKAITCLHKFKT
FT                 ALSNFLSEKCYYSVDEFFSEK"
XX
SQ   Sequence 4467 BP; 1737 A; 783 C; 764 G; 1183 T; 0 other;
     ggcacctgtg aaaacccttt gtaagatgtc tcagtttctg taaaatggat gtgatgtgtg        60
     taaaatatgc caaaaaaggt gaaaagaggt atactatgta ccgcatgcaa gtcgtggtac       120
     catgataaat gtgtgcaagt gaatctaaaa tatatgaaag acgaacatat catgccatca       180
     gcgttttgcg agtgccgcga aaaacaaata atggacacac ttaaatcaaa agaagaaaca       240
     tgtgtgctca cagagattta gtgtctatta acggaaagta tcaagaaaca tcaagacctg       300
     gaaataaaat accaaggatt ggattgaaat catcgcctag cacaagacat tgctgttatc       360
     ccaaaacggt cattcgcaca gaaatcgtgc atgtgccaac taaaacaaca aacagtaagt       420
     aagctccatt gatccataaa taaatttcag ttctagagga tgattctagt gaaacaacca       480
     acacagcgaa ccgaatcagt gataattcaa gaaagtgtac acccaagaaa ttttccacaa       540
     taaaacaaga aacaacaaaa gacagattgt attacttggt gacagtcacg ccaagaaaat       600
     tgctgaaaaa ataaatgaat acagttcgtc ttttactgcc actggcacaa cgaagccaag       660
     tgcgccgttg tctgaaataa tgaaaaacag tggggcacta aatgagttat ctaaaaatga       720
     tactgttata atcatgggcg ggagcaatga tgtgtaccga aacgagggta aacacgctac       780
     tcggtgttta aaaaagacgc tacatgatct caaagtgcct aaagtcgtag ttaccagcat       840
     gcctcacagg tacgatctac aggacaactc gatcgtaaat gtggagctta caaaaataaa       900
     tagacagttc agcaaaatat gtaagtgctt tcaaaacgtg acgttctttg agctacctag       960
     ctcaagagac ttgtttacga aacatggtct acactacaac aacgctggga aggcactcat      1020
     tggaaaaatg ctgacaaaat taatacagaa agtcgatcat gatacaagaa atccaattgc      1080
     tattcagcca gcttcgatca tgaaatacga aatcaccaaa acaacttgga aaaaaaaaac      1140
     agtcgcagcc ccaacaatat tatcatctgt agaagaagta ccagtacctc cagaatcagc      1200
     cacagcaagg aaaagtgaga agccaatagg aagaaaagtt gttagtgaat caattggcaa      1260
     gaaaactgca actcttcatc atccaaatga ttttttatat caagtgaaga gaaacgaaaa      1320
     tcctacaagg taagaagtgc tcagtgcttc tcaagtttcc tgacagtgtt tcatcaaaat      1380
     gtacaatctc tgtcaaacaa attaaatgaa cttcaaattt tgttagaaaa tgatataaaa      1440
     aaaaccttct gtattatgta taactgaaca tcatcttaac aaagaaaagc tgcatatggt      1500
     atcttttcca aattttgtat tgggtagtta tttttgtaga aaacagtata attgtggagg      1560
     cagttgcatt tacattaaaa atggcataga ttttaagtgt ataaattatc tagaaaaatt      1620
     atctgtggag aaagattttg aggtgaatgg gattgaaata actaatgaaa aaatagttat      1680
     aatttgtctg tacagggcac caactggtga cataagtatc ttgttaaaaa agcttgaaaa      1740
     tattttatac aagattacac agcaaaatag gaaggttatt atatgtgggg actttaatat      1800
     tgattgtgga gaagagtcca agcatagaac tgatttatta aacctactat caactttcaa      1860
     tttaaaagcc actgtaaaaa caccaacacg tgtaactaaa accacagcca caatccttga      1920
     ccaaatattt acaaatgtgc ccatggaata cacactacaa actttcaaca caggttttgg      1980
     ggaccactca gcccaagaaa ttcaaataag actagagaac agcttatttc aactcagcac      2040
     ctaaccacta cttttaggaa gtataatgaa cagaatatac aatattttct gtactgtttg      2100
     actaaagaaa cttgggaaaa ggtttatgaa tgtaaaaata caaatgataa atataacaca      2160
     tttataagta ctttctgtca ctattttgaa ctgtgctttc cactagaaag taagacagtc      2220
     acaaaaagtg ataggaaagt aaaatggatc acaacaggta tacaagtatc tgcaaagaaa      2280
     aagagattac ttcatgaaat atctaaacag tgcacaacat ctcctgagtt tgattcctat      2340
     tttaagaatt acaaaaagat tttaacgaaa gttataaaag aagcaaagag aatggcaaac      2400
     agctccttca taaaaaatgc accaaataaa atgaaagcca catgggatgt tgtaaggcag      2460
     gaaacaggtg taaaactaag acaacatgaa aacttcaaac ttaaggaaaa ctcatctgta      2520
     atatctaatc cccaacagat agcaaataaa ttcaattcat attttactga gatagccagc      2580
     agtctggtga agcaaaattc acagaatgac accattacaa gtcagactaa aactagccgt      2640
     agtagtaact ctctcttcat atatccaaca gatgaaaagg aaatgttaaa aataataggt      2700
     gagctgaaat caaaatcttc atacagtgtt gacaatatac cagaccacat cattaaaaag      2760
     tgtgctccct taataacaaa gcccttggtc gacatctgca ataactcgct gtcggaggga      2820
     atttttccag aaaagctgaa aatagcaaaa gtgaagccac tatacaagaa aggggaaaaa      2880
     accaacatag aaaattatag gcctgtctct cttctatctg ttttttctaa aataatagaa      2940
     aaaatctttt acaaaaggct cataggcttc attgaaaaac ataaactcct ctcagctacg      3000
     caacatggtt ttcgaaaagg taaatctact gagacagcta tcattgattt tctaaatgaa      3060
     gctctaaact caatagacaa aaaagaacat atagtagcaa tgtttttaga tctgtcaaaa      3120
     gcttttgaca taattaacca tagtttatta cttagtaagc tagaaaatat gggcatcaga      3180
     ggtcccgcct atgagtgggt acagtcatac ctactaaata gacaacaagt agttgaagta      3240
     gtgcacaaaa atgggaaaac atacaatcat actattcaca gaaatgttgt ataaaatacg      3300
     gtgtgccaca gggctccgtc gtgggaccga ttctgttcct tctttttgtg aatgacttgg      3360
     agccactcac ccctaaccag aaatatatta aatatgctga tgacacaaac atacttatca      3420
     aaggtggaac actggaagag ttgcagaatg aaataaaaga gtgtacatct cacctatcag      3480
     aatggttctc tgcaaacaac ttaataataa atacacagaa aacaatcacc atgaatctac      3540
     atacaataca gaacaaacag aatctaactc caaccataga actgctgagt aaaacactag      3600
     aatctgtaaa tgctaccaaa tttcttgggg tctggatcaa gatgacctaa gatggaacaa      3660
     ccatatacaa tatacatgta gcaaactaaa cagcatttgt tatggtatca aaattcttgc      3720
     aggttgcaca tcaatgcaag tcctcaaaac tgtgtattat gctcaagtag aatcacagtt      3780
     aaggtatggt ttaatctgct ggggaaattc accacccagc aaaagttgtt tcattgccca      3840
     gaaaagaata ataagagcca tggtaggtgc agcaccacgt ttctcatgca aacctttatt      3900
     taaaaaactg tgtattcttc cactaccgag cctctacata cttgaagtag tagtgttcat      3960
     acgaaaaatt ttagattccg aaaacaagct cgtaccaaca aatcacagta ttcacacata      4020
     caacacaagg aagcatcgtg atatacatgt acagtttgct cgtacgacac taaagcaaaa      4080
     aggccccctg caggcaggga caaaacttta taataaatta cctaagaaca ttaaagcaat      4140
     aacatgcttg cataaattca aaactgcttt aagtaacttt ctgtctgaaa agtgctatta      4200
     tagtgtggat gaattttttt ctgaaaaata atttgggaaa tgaaaaagtg taaatatgta      4260
     tataagatta aaaaaatgtg agtgtttaaa cttagaaatg tatgtgtatt ctagaaagag      4320
     ccatttatgt gctttttatg tatggcttaa ataattttat tgtattttag aatatactat      4380
     atacattcta tgacttgtcc tatatcacta tgtactgctg tacaatgtat gattttacag      4440
     gaccaataaa tatacaatac aatacaa                                          4467
//
ID   Daraw1cons  repbase;    DNA;    INV; 500 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Daraw1cons.
XX
OS   Drosophila arawakana
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; dunni subgroup.
XX
RN   [1]
RP   1-500
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Daraw1cons.
XX
SQ   Sequence 500 BP; 124 A; 131 C; 136 G; 109 T; 0 other;
     tttgggtgcc gcacgagctg acgcaaaaaa acatttttgc ccgtatggat gcatgcgaat        60
     cgcttctgaa tcgcaacaaa atcgacccgt ttttgaagcg gatggtgact ggcgatgaaa       120
     agtgggtcac ttacgacaac gtgaagcgca aacggtcgtg gtcgaaaagc ggtgaagctg       180
     cccagacggt ggccaagcct ggattgacgg ccaggaaggt tctatctgtg tgtttggtgg       240
     gattggcagg gaatcatcca ctatgagctg ctcccctatg gccaaacgct taattcggac       300
     ctgtactgcc aacaactgga ccgcttgaat gcagcactca tgcagaagag gccatctttg       360
     atcaacagag gccgaattgt cttccatcag gacaacgccg cccaccttca cacatctttg       420
     gtgacgcgcc aagaagctcc ggggaagctc ggatgggagg ttcttttgca tccaccgtaa       480
     cagccccgac cttagctcca                                                   500
//
ID   DBC-150     repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   20-OCT-2015 (Rel. 21.03, Created)
DT   20-OCT-2015 (Rel. 21.03, Last updated, Version 1)
XX
DE   DBC-150 satellite DNA.
XX
KW   Satellite; Simple Repeat; satellite DNA; Tandem repeats;
KW   Drosophila; Microchromosomes; dot chromosomes; DBC-150.
XX
OS   Drosophila gouveai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-150
RA   Kuhn G.C.S.;
RT   "Low rates of homogenization of the DBC-150 satellite DNA family
RT   restricted to a single pair of microchromosomes in species from
RT   the Drosophila buzzatii cluster.";
RL   Chromosome research 15(4), 457-469 (2007).
XX
DR   [1] (Consensus)
XX
CC   Satellite DNA family composed of repeats around 150bp. It was
CC   found in Drosophila species from the buzzatii cluster, where it
CC   is located exclusively on the dot chromosome (microchromosome or
CC   6th chromosome pair).
XX
SQ   Sequence 150 BP; 29 A; 40 C; 47 G; 34 T; 0 other;
     gtactgccca gatccaacac ccgcgtataa cgttcggcgt agaattttgg gtgtcacccc        60
     gtatatccgt tgggccgggg tattggtcaa gccccagtca catatgtatg tagcaggagg       120
     cggccgggta ttgccgaagt cgcggtccgg                                        150
//
ID   Dbusck2cons repbase;    DNA;    INV; 504 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of irritans
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dbusck2cons.
XX
OS   Drosophila busckii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-504
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
CC   Dbusck2cons.
XX
SQ   Sequence 504 BP; 147 A; 118 C; 115 G; 124 T; 0 other;
     tgggtgcctc acgagctcac atttgactaa aaacaacaac gtgttgatga ttctgagcgg        60
     tgtttgcagc tgttaactcg taatacaccc gattatttgt gtcgatatgt gacaatggat       120
     gaaacatttc tccatcactt cactcctgag tccaatcgac agtcggttga gtggacagcg       180
     accggtgaac cgactccgaa gcgtggaaag actcaaaagt ccgctggcaa agcaatggcc       240
     tctgtttttt gagatacgcg tggaataatt tttatcgact atcttgagaa gggaaaaacc       300
     atcaacagtg attattatat ggcgttattg gagcgtttga aggtcgaaat cgcggcaaaa       360
     cggccccata tgaagaagga aaaagtgttg ttccaccaac acaacgcacc gtgccacaag       420
     tcattgagaa caatggcaaa aattcacgaa ttgggcttcg aattgcttcc ccacccaccg       480
     tactctccag atctggcccc aagc                                              504
//
ID   Dbuski1cons repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mauritiana
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dbuski1cons.
XX
OS   Drosophila busckii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-492
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
CC   Dbusck1cons.
XX
SQ   Sequence 492 BP; 161 A; 126 C; 118 G; 87 T; 0 other;
     tgggtaccgc acgagctgaa accaagagac attgaaaggc gattatgcat tgctgaacaa        60
     ctgcttgcaa gacaacaaag aaagggtttt ttgcaccgaa ttgtgacagg ggatgaaaag       120
     tggatccatt acaacaacga aacccggcgc aaatcttggg gtaagcccgg tcacaaagca       180
     gtatccactc cgaaacccaa tttccatgga accaaggtta tgctctgtgt ttggtgggac       240
     cagctaggcc cgatccacta cgaattgctg aaacagggcc agactatcaa cggggagctc       300
     taccgacaac aattgagccg tctgagccgg gcactcaaag aaaaaaggcc acaattcgaa       360
     gaaaggcacg acaaagtcat tcttcagcaa gacaatgcaa gaccacgcac cagcagagtg       420
     gtcaaagatt acctcaacga gctgaaatgg gagattttgc cccacccgcc atacacgcca       480
     gacttagcac ca                                                           492
//
ID   Dcardi9     repbase;    DNA;    INV; 473 BP.
XX
AC   GU229938;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dcardi9.
XX
OS   Drosophila cardini
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; cardini subgroup.
XX
RN   [1]
RP   1-473
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229938; Positions       1     473.
XX
CC   Clone Dcardi9.
XX
SQ   Sequence 473 BP; 124 A; 122 C; 133 G; 94 T; 0 other;
     tgggtcccgc accgagctga cgccaagaaa aacccttctg gtgctgctga tacgcgaacg        60
     aactagactg ctgattacaa gcggatggtg actggcggcg aaaagtgggt cacatacgac       120
     aatattaagc gaaaacggtc gtggtcgaag gccggtgaat cgtcccaaac agtggccaag       180
     ccgggattga cggccaggaa ggttttgcta tgtgtttggt gggattggaa gggtattatc       240
     cactatgagc tgctcccata tggccagacg cttaattcta ccatctactg cgaacaactg       300
     gaccgcttga agcaggcaat cgaccagaag cgtccagaat tggccaacag gaggggtata       360
     gtgttccacc aggacaacgc caggcaacac acatctttgg tgacgcgcca gaagctacgg       420
     gagctcggat ggaaggtttt atcgcatcca ccatattccc ccgacctagc ccc              473
//
ID   DEC1        repbase;    DNA;    INV; 502 BP.
XX
AC   AJ132474;
XX
DT   24-APR-2000 (Rel. 5.03, Created)
DT   24-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   DEC1 is a putative nonautonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DEC1; DEC2;
KW   MITE; TIR; nonautonomous DNA transposon.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-502
RA   Braquart C., Royer V. and Bouhin H.;
RT   "DEC: a new miniature inverted-repeat transposable element from
RT   the genome of the beetle Tenebrio molitor.";
RL   Insect Mol. Biol 8(4), 571-574 (1999).
XX
DR   GenBank; AJ132474; Positions       1     502.
XX
CC   28 bp terminal inverted repeats; about 87% identical to DEC2 in
CC   the
CC   first 428 bp.
XX
SQ   Sequence 502 BP; 168 A; 65 C; 72 G; 197 T; 0 other;
     tacactgacc ggcacaaaaa acgactcatt atgatttctt aataaatgat cttgaaatta        60
     ctttgtgctt atttttcttt attatagtta aattgggata ttttgaatga tcgggagtgc       120
     catggtcacc atggcaaccg aatgttttgt ttaaataaat tataataata aatttgcgct       180
     acttccacgt tgtgtttttg atggttgatt tacgtgttaa aagatctaat gtgacaatac       240
     gagatactaa ctcaaaatgc tgttcaaatt ttggcaattt ttcataacat aaaatttttt       300
     ctgaaaaatt acttttattt ttttttcact aaaattttat ttgctgtgtt taatgttttg       360
     tttgtcggat atctttgaca aagaataact taaataacac ttatcaatac aacatgatat       420
     caaaaaaaaa ttctaagaca atgaattgct taattatatt aataaaattc aaagtgagtc       480
     gttttctgtg ccggtcagtg ta                                                502
//
ID   DEC1_DS     repbase;    DNA;    INV; 2370 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   Drosophila simulans DNA from repeated region of dec-1 locus.
XX
KW   DEC1_DS; dec-1 locus; tandem repeat.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Escher A.S. and Lambertsson A.;
RT   "Evolution of the dec-1 eggshell locus in Drosophila. III.
RT   Sequence comparisons of the simulans complex repeated domain
RT   reveal non-concerted evolution.";
RL   Hereditas 124(2), 111-120 (1996).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (DEC-2003).
XX
DR   [2] (Consensus)
XX
CC   Average similarity to consensus 99%.
XX
SQ   Sequence 2370 BP; 683 A; 624 C; 671 G; 389 T; 3 other;
     agtcagtcgg ccaacgagct ccggcgaaca cagatcgttg attttcgagt tttgcccaac        60
     aggatggatt gttagcctct gccgctcctg gcgctcttgt cgtccaggcg gacaaagtga       120
     gtaacctgat gatcctgcaa cggatgctgg caacgaccaa tccaccggac accaccaagg       180
     attcccagtc aggatgagat ccttggcaga tgccgccatt cccatccgca ctggcatccc       240
     gatggacgct tttacatgat gttcccggcg tgggcagcct gctggggcag ccttccgcca       300
     ctcgattctg ggccattccc gatcagccac agcggcagcc tccaaggtgg tctgtcctgg       360
     ccgatgatgc gacgccaaga ccgagttcaa tccgccccaa atccacttgg tcagtatgaa       420
     ttggcccgct ctgccgcagg acttccaact gcccatggac tgggaccgca agtgggctct       480
     ttttggccca actgcctatg cccctgccgg tcttctgggt gccggcagca cctccccacc       540
     agccatctgg gaaccgctct gcagaagctt tccctcttaa cccgtaactt tgatgcctcc       600
     agtcttctgg gccagatgct cctccaattg atttcgtgca aatgcaaagg cattcttccg       660
     gaatgacacc gccaaccgca cgatgcccag gcctccgaca tttccgaggt agggtacgtc       720
     ctgaggtcct atcgcagagg ccagatgaag ataaatcggc actgaaggag caggagaggc       780
     acaacaggtc aagatcagga gcaagtgcct ctctggttcc gaatgcccac acagaatagg       840
     atgcgactga aagacctgga gatctgcggg tgaggcaaag ggcttgagcg ccaggtatac       900
     gattgagaat gctgcagaag atcgaactat ggctaagcag atgaggtcca gcctcaaagg       960
     attcacccta caggatcagt atccacttcg acacccattc acaagatcac ccgtgctgaa      1020
     ttgagcagcc ctggatgatg tccgccgtgg tcaacaagga gcgcaacgag gattccggca      1080
     taacaccaga aggcaaatgc cttgaagcga caggccaacc aggatcagtg tccaaggagg      1140
     aatgtccagt atggcgtata tcgcatggcc acgacagatg gagaggagaa gggaagcagg      1200
     acaaggttta cgcggcctca gacggaacag aatccaatga tgatgcagca aagacaatgg      1260
     tcggaggagc aggccaagat ccaacagaat caacagcaga tccagcaaaa tccaatgatg      1320
     atgcagcaaa gacaatggtc ggaggagcag gctaagatcc aacagaatca acagcagatc      1380
     cagcaaaatc caatgatggt gcagcaaaga caatggtcgg aggagcaggc caagatccaa      1440
     cagaatcagc agcagatcca gcaaaaycca atgatgatgc agcaaagrca atggkcggag      1500
     gagcaggcca agattcagca tgatcaacag atggcacaac agatggcaca gcaaggtctc      1560
     atgatgacgg agcagaggca aaggcagtgg tcagaagatc aggccaaaat tcagcaggct      1620
     caacagatgg cccaacagac acccatgatg atgccacaga tgcaacaaag gcagtggaca      1680
     gaggatcccc aaatggttca gcagatgcaa cagaggcagt gggcagaaga tcaggccagg      1740
     atgcaaatgg cccaacagaa tccaatgatg caacagcagc gacagatggc agagaatccg      1800
     caaatgatgc agcaaaggca atggtccgag gagcagacca aaatcgaaca ggctcagcag      1860
     atggcacaac agaatcaaat gatgatgcag cagatgcagc aaagacaatg gaccgaggat      1920
     caggcccaga ttcaacagca gcagagacag atgatgcagc agacccccat gatgatgaag      1980
     gagcgccagt gggcggagga gaaccccagt ctgtccagca gcaaggccat gatgatggca      2040
     gcagatcccg atgatgcagc gtgagtgagg gaagataggc aaggagactt agtggcgagg      2100
     cgggacccca aatgccggag aacgacgcca ggcacaaagt cgatccctgg ggttggcggc      2160
     aacaagcgca agaagtccaa gtccaagtcg cgccgcaacg gtataactat tactatgcgc      2220
     acccagcgtc cggtggttca gttacggaac aagtacggcg gaggtggtgg atcgaatgcc      2280
     tatgggtctc agtcaattat caaagtcaag gctaggctgc cgtgggtaac gagaggtgat      2340
     gaatgtgcgc cagcaccaga catggccagg                                       2370
//
ID   DEC2        repbase;    DNA;    INV; 465 BP.
XX
AC   AJ132475;
XX
DT   24-APR-2000 (Rel. 5.03, Created)
DT   24-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   DEC2 is a putative nonautonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DEC1; DEC2;
KW   MITE; TIR; nonautonomous DNA transposon.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-465
RA   Braquart C., Royer V. and Bouhin H.;
RT   "DEC: a new miniature inverted-repeat transposable element from
RT   the genome of the beetle Tenebrio molitor.";
RL   Insect Mol. Biol 8(4), 571-574 (1999).
XX
DR   GenBank; AJ132475; Positions       1     465.
XX
SQ   Sequence 465 BP; 153 A; 62 C; 62 G; 188 T; 0 other;
     tacactcacc ggcacaaaaa gcgactcatt atgatttctt taataaataa tcttgtgctt        60
     attttttttt tttataatag ttaaattgag atattttcaa agatcgggag tgctatggtc       120
     accatggcaa ccgaattgtt ttgtttaaat aaattattga aaagtttgcg ctacttccat       180
     gttgtgtttt ggtcggttgt tttacgtgtt aaaattttta atttgacaat acgagatact       240
     aattcaaaat actgttcaaa ttttgacaat tttttgtaac ataaaatttt tttctaaaaa       300
     ataacttatc atttttcatt aaaatcttat ttcctgtgtt ttaatgtttt gtttgtcgga       360
     tattttttgg caaagaataa cttaaatagc acctactaat acaacatgat accaaatgaa       420
     ttacttaaaa ttcaaaatga gtagactctt caaacgatca ttgtg                       465
//
ID   DESMAR1     repbase;    DNA;    INV; 1292 BP.
XX
AC   U24436;
XX
DT   15-SEP-2005 (Rel. 10.09, Created)
DT   15-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Mayetiola destructor Desmar1 mariner DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   Interspersed repeat; DESMAR1.
XX
OS   Mayetiola destructor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Cecidomyiidae; Mayetiola.
XX
RN   [1]
RP   1-1292
RA   Russell V.W. and Shukle R.H.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (10-MAY-1995).
XX
DR   EMBL/GenBank/DDBJ; U24436; Positions      99    1390.
XX
FH   Key           Location/Qualifiers
FT   CDS           170..1210
FT                 /product="DESMAR1_1p"
FT                 /translation="MENFENWRKRRHLREVLLGHFFAKKTAAESHRLLVEV
FT                 YGEHALAKTQCFEWFQRFKSGDFDTEDKERPGQPKKFEDEELEALLDEDCC
FT                 QTQEELAKSLGVTQQAISKRLKAAGYIQKQGNWVPHELKPRDVERRFCMSE
FT                 MLLQRHKKKSFLSRIITGDEKWIHYDNSKRKKSYVKRGGRAKSTPKSNLHG
FT                 AKVMLCIWWDQRGVLYYELLEPGQTITGDLYRTQLIRLKQALAEKRPEYAK
FT                 RHGAVIFHHDNARPHVALPVKNYLENSGWEVLPHPPYSPDLAPSDYHLFRS
FT                 MQNDLAGKRFTSEQGIRKWLDSFLAAKPAKFFEKGIHELSERWEKVIASDG
FT                 QYFE"
XX
SQ   Sequence 1292 BP; 418 A; 251 C; 289 G; 334 T; 0 other;
     tattgggtgt acaacttaaa aaccggaatt ggacgctaga tgtccacact aacgaatagt        60
     gtaaaagcac aaatttcata tatacgtcat tttgaaggta catttgacag ctatcaaaat       120
     cagtcaataa aactattcta tctgtgtgca tcatattttt ttattaacta tggaaaattt       180
     tgaaaactgg cgaaaaagac ggcatttgcg ggaagttttg ttgggccact tttttgcaaa       240
     aaaaactgct gcagaaagtc accgtttgct tgtggaagtt tacggcgaac atgccttagc       300
     aaaaacacag tgtttcgaat ggtttcaacg cttcaaaagt ggtgactttg atacggaaga       360
     caaagaacgt cctggtcagc caaaaaagtt tgaagacgaa gaactggagg cattactcga       420
     tgaagattgt tgtcaaacgc aagaagaact tgcaaaatct ttaggagtga cacaacaagc       480
     catttcaaaa cggctaaagg cagctggata cattcaaaag caaggaaatt gggtcccaca       540
     cgaattgaag ccgagagacg ttgaacggcg attttgcatg tcggaaatgc ttcttcaacg       600
     ccacaaaaag aagtcatttt tgagtcgaat tattactgga gatgaaaaat ggattcacta       660
     cgataattcc aagcgcaaaa aatcatatgt gaagcgcggc ggacgagcca aatcaacacc       720
     aaagtcgaat ctccatggcg ccaaggtaat gctctgtatt tggtgggatc agaggggtgt       780
     tttgtattat gagctattgg aaccgggtca gacgatcaca ggggacctct accgaacaca       840
     attgatccgt ttgaagcaag cattggccga aaaacgcccg gaatatgcga aaagacacgg       900
     ggcggtaata ttccatcatg acaacgctcg gccacatgtt gctttaccgg ttaagaacta       960
     tttggaaaac agtggatggg aagttttacc ccacccgcct tatagcccag accttgcccc      1020
     ttctgactac catttgttcc ggtcgatgca gaatgacctt gcgggaaaac gcttcacttc      1080
     agagcagggt atccgaaaat ggcttgattc attcttggcc gccaagccgg cgaagttttt      1140
     tgagaaggga atccatgaat tgtcagaaag atgggaaaaa gtcatagctt cagatgggca      1200
     atactttgaa taatgcattc attcattttg ttatcgaaat aaagcattaa ttttcactaa      1260
     aaaattccgg tttttaagtt gtacacccaa ta                                    1292
//
ID   DGRSAT1     repbase;    DNA;    INV; 189 BP.
XX
AC   M24985;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.grimshawi satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; DGRSAT1; DGSAT1;
KW   Satellite repetitive element.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-189
RA   Miklos L.G. and Gill C.A.;
RT   "The DNA sequences of cloned complex satellite DNAs from Hawaiian
RT   Drosophila and their bearing on satellite DNA sequence
RT   conservation.";
RL   Chromosoma 82, 409-427 (1981).
XX
DR   GenBank; M24985; Positions       1     189.
XX
SQ   Sequence 189 BP; 71 A; 28 C; 30 G; 60 T; 0 other;
     gaattcactc gatctgtgga acaaaactgc attaaaataa tttgacttcc gactcatcta        60
     agaaagatat taagggatat tcttcgataa atagaaaata tatggaaagt actaaatagg       120
     gtctgccttg aaataaatgg ccatatcttc gtcaaaaatt gccccatttt aattataaag       180
     gtgttttta                                                               189
//
ID   DGYSAT1     repbase;    DNA;    INV; 185 BP.
XX
AC   M24982;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.gymnobasis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; DGYSAT1;
KW   Satellite repetitive element.
XX
OS   Drosophila gymnobasis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; hawaiiensis subgroup.
XX
RN   [1]
RP   1-185
RA   Miklos L.G. and Gill C.A.;
RT   "The DNA sequences of cloned complex satellite DNAs from Hawaiian
RT   Drosophila and their bearing on satellite DNA sequence
RT   conservation.";
RL   Chromosoma 82, 409-427 (1981).
XX
DR   GenBank; M24982; Positions       1     185.
XX
SQ   Sequence 185 BP; 70 A; 33 C; 26 G; 56 T; 0 other;
     gaattcgcat gaatgttgaa acaacactgc atttaaaaaa attgacttca gactcattaa        60
     agaaagatat taacggatat ccgtcaaaaa ctcgatataa gttaacatga cataggctca       120
     tcctataaac acctggccat attttcgtca aaaattgtcc aatttctaat attacggtag       180
     ttttg                                                                   185
//
ID   DIRS-1_BM   repbase;    DNA;    INV; 4870 BP.
XX
AC   BABH01043987.1;
XX
DT   10-JAN-2012 (Rel. 17.02, Created)
DT   10-JAN-2012 (Rel. 17.02, Last updated, Version 1)
XX
DE   A family of DIRS-type LTR retrotransposons.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4870
RA   Piednoel M., Goncalves I.R., Higuet D. and Bonnivard E.;
RT   "Eukaryote DIRS1-like retrotransposons: an overview.";
RL   BMC Genomics 12(1), 621-621 (2011).
XX
DR   EMBL/GenBank/DDBJ; BABH01043987.1; Positions    7290    2421.
XX
SQ   Sequence 4870 BP; 1500 A; 1052 C; 975 G; 1343 T; 0 other;
     attatgtgtt ccgtttgacg tccgaagtcc attatgagag tacatcgtct gatttccact        60
     gcaggtcgct acatttgact acttccgttt cctaagtccc gcctacagcg ccctctataa       120
     cgactggaac cgagccaaca agcaaagaca agccgccata tttgtcattg ttgcgtcgtt       180
     ttttcccacg tgcagtcgtt aatatttaaa aaataataat ttgatagttt aaactgttat       240
     aaataacttt cgagatttaa agtagaaagt tagtatcaaa caagtgttat cgttatcttc       300
     tgtttcttga aaaactcaaa ggctctgcaa tgagtgacga ggttatcgcg cctaatctaa       360
     ataaaacttt aagtgaggat agttcttcga cttctccgga tatttcttcg gattcatcgg       420
     aaaataaaga cgaggaacca ccaagaaaac gccgaaagcg tgactggtcg cgagatctaa       480
     ataaaaggtt tgacttattg tcacaacagt tggtgagtca tgtgaataat attttaattc       540
     cgaattatgc tattactggt cgtacacctg tggtcccgct ttcacacata caaataccaa       600
     cctcttgtaa taataatgtg tccgatctgg tttcaagttc caatcgaaga tcaacgactg       660
     acgaacagtt tttacgtcgg ccattaacag aggcgggtag ttttgtagat ttgagcgttt       720
     ctataaaaga acctactgta ccgaaagcaa ttcagacacg ggtggacaaa attaaagata       780
     tgcaaagatt tgactcgccg gcttggaacg cggtccgcta ttcagatgtt cagaaaaagt       840
     atgcagcgtt tccagctttt actgaattaa aggtcaatga ggaatttcga tgtctcgaga       900
     actcctttag tccactacgt tggttccaga tggagcgtag ttttgctgca ttatctcaag       960
     cccttttggc acagaacgaa tgcgttaata ctgcgttaca aaaccttgtc gactggtcaa      1020
     attcagcgga cgttcagctt aatgctttct ccatttatga aaagctgaaa caactattcg      1080
     gtaatgattc cggctataaa acagtttctc acgacattct tcaaataatt tgtggaaagc      1140
     gagctgaggt tttagaaata cgtcgtagag atctcttgaa aaaattaaag gataaatata      1200
     taagagaaga tatagagaga atacctcctt cttgtgatta tatgtttaat cccggtttat      1260
     tatcggcata tatacagaag attggtggta ttgataagtt acaaaagcag gcaccgtctg      1320
     ctacccgcag tcggcccaaa tcgccggaac cctcgacttc taccaccact tcaaagccat      1380
     ttcgatctag gccaaatttc aataaaacta aagaggccga aaacagattt tctgagcgag      1440
     gctatccgaa taactcctca gcaaagagaa tgggaggagg ggggcgcaag tacaaaactg      1500
     gaagaaagtc aggaaataaa aataaatgac tcaacaagat tttcaggcgg atgtctaaga      1560
     ctctatcaaa acatttggac tctcttcaat ccccccaacg ttattttgaa attaataacg      1620
     ggtgttcaaa tacccttcaa caaaatacct ccattggttc ttccaacctt ggatgtatta      1680
     gcaaaatatc aaactccaac atcacctctg atgtcaatcg aaattcagaa tttaattcaa      1740
     ttgagagttt tagaacccgc acccctgaca ccgtctttca tatctcctct tttcataatt      1800
     cccaagtcat cgaataattt tcaacctcaa ggcgttgaat cagtacacga aacagagtca      1860
     ttttcatctt ttctaccatc aacaagttct caagttttta caacatggag attggatggc      1920
     caaactggat ttgagccagg cctattatca tctaccaata aaaaaacagc acagaaggtt      1980
     tctccggatc agttatcagg gtcgtctaca tcagatgact tgtctgccat tcgggttagc      2040
     tgcagcaccg cgaatttttg cttcagtgac caactggaca gccgaagtac ttcgcaagaa      2100
     gggtctgcga ctagtggttt attggacgat tatctgctcg tacaccagga cagaaacgtg      2160
     ttggaatctc aagtaaaaat ggccatacgt tttctgagca gcttaggatg gtcgatcaat      2220
     ataaaaaaat cggttgtgac accgacgagc ttgataaact ttctgggaat cgtatgggac      2280
     accaaatcca acacgaagtc tctgcccttg gaaaaaatac aaaaaattcg tcagaatttg      2340
     ctcgtgcgac ttgctgccgg cagttggaac ctaaagcagg ctcaacgcct cttaggatat      2400
     ctcaactttg cgactttcgt cacccaccgg ggaaggttgc attgccgagt cctgcagtac      2460
     cacagcaaca agctcaggag gtatcctcat ttaccaaagc agtatccaga cgaggtacgt      2520
     acagagctgg attggtggtt agtgaacatc agtcagaaga caccaattca tcctcagaga      2580
     atggccacga accacgtcat caccgacgcg tcggacattc aatggggagc ccttgtaaac      2640
     aacgaaactg tggaaggacc atggaagctc caccagagaa aatagcactg caatatgaag      2700
     gagatgtatg cagtgatagc cgccataacc tccagagcga cgttgctcca acactcaaca      2760
     gtaattcttc agagcgacaa cagaacagta gtttcctaca taaaaaacga aggaggaacc      2820
     cggtcacggc aattgctaga tctaactcga aaattgctga ccttagtaga ccacctcaat      2880
     gttgtacttc tccctcacca cctaccggga ctgtacaaca ccgaagccga ccacctctca      2940
     cgcaatcgcg gcggctccga gtggcatctc acagaagaag caaccacgag gctattcaac      3000
     ctgtggggaa caccagacgt agacttgttt gcgtctcgga ccgctcatgt ggtaacaaac      3060
     tatgtcactc aagacttgtt agactcgaac gcctactttc acgacgcgtt cagcagatct      3120
     tggcactacc gactggcgtg gctgtttccg ccgcccagtc tgataccccg agtgctggac      3180
     catctcaact cagcctcagg tcggtacata ctagtggcac ccaagtggaa gaagcccttt      3240
     tggaggccag acctgaaaac acgtgccctc agacgacccg taaaactcag agatctgagc      3300
     accagtctgg tggacacaat gacaatgtta ccgccagccc atgtcagcaa tctacacctg      3360
     gaagcttggc tcattttggg tgggacacgc tgacggggac atggacatcg caggaaaaaa      3420
     acttattatt atcgtgctgg agagagtcta cgataataac atacgcccct atttggaata      3480
     agtgggtaag gttttgtcaa gaaaatagta ttaattctcg ggtacccgaa ttagcaaatg      3540
     tggctagata tctcggttat ttgtatttat ctcatggtct ctcctaccga accattttag      3600
     ttcataagtc cgttatagca tctgtttgcg aaactatatc ggatataaaa ataacttcga      3660
     gcccaatagt aaaacatata ctgaaagcta tatccttagc aaagcctgta ccttctaaat      3720
     tacctatatg ggatgcgaga attttgattt gttatttaaa agattataat atagatttaa      3780
     atagtttata ccaagtctcc aggcacgctg ctgctatttt gctattatct tcgggtcgca      3840
     gaattcatga ccttactcta ttgcatgttg acagtgacca ttttatagat aatgttgatt      3900
     ctattacctt acatcccata tttgggtcga aaactgattc atcttcatac caacaatcaa      3960
     gttggacatt cgtgactgct cctgacctac gcattgatgc agtatattgg ctacgcactc      4020
     tagtgaatat gacacatcaa accagaggga atgtaagtaa tctattctta gcaactaaag      4080
     gtcctactaa accggctact gcagcgatga ttggtagttg gataaaacgt cttttagcag      4140
     attcaggtat tcaggcctca gccggaagtt gtagagcggc agtggcatct ttaaattggg      4200
     tagaaaatta ccacattaat gatattttag ctaaaggtaa ctggcaacat gagcatactt      4260
     ttagaaagtt ctatcaaaaa catattatta atgcatcaaa cacaaatata aattgtgaga      4320
     aatctctgtc tcagtatttc tgtcctaaat cataatatta tgtcgatttc aatgaagtag      4380
     gtaataaatt atatggttac caccttcaat taatttaaac tatgtgctta atttaagctt      4440
     tgctttaatt aaacataatg agtcacattg ttgcgtttta aataaatatt ttattacaaa      4500
     tacaagccac caggaaataa caaacagtct ctcataatgg acttcggacg tcaaacggaa      4560
     cacataatat agaaatttta ccttccaata aaatttgtat tatgtttcct aagacgtccg      4620
     aagtccagat aatgtcttcc tggggctaca tccatcatta tgagccgcac aatgacaaat      4680
     atggcggctt gtctttgctt gttggctcgg ttccagtcgt tatagagggc gctgtaggcg      4740
     ggacttagga aacggaagta gtcaaatgta gcgacctgca gtggaaatca gacgatgtac      4800
     tctcataatg gacttcggac gtcttaggaa acataataca aattttattg gaaggtaaaa      4860
     tttctatata                                                             4870
//
ID   DIRS-1_FoCa repbase;    DNA;    INV; 4972 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4972
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2433-2433 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. The sequences 25-163 and 4762-4900
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..1296
FT                 /product="DIRS-1_FoCa_1p"
FT                 /translation="MKDIEGSIEYGPDLLPQISEGFSKTVSRPLTKETASK
FT                 LKDQIKIPSNCKGFAVPKMNSEIWAHLPTGARLADIQTQQVQQSISFGLIT
FT                 MAEIANEVATHSNEIPQEVKKRILKLAIDGGNILGDQLQASNMKRRQEVKK
FT                 LINPEYSAICNKQVIIIIYLLNMLHRNNILQ"
FT   CDS           1347..3488
FT                 /product="DIRS-1_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="QFERNFKDVKSSFNCYSIVNDKDYSVPSIQFLKKYRK
FT                 FKLPTPVPTIPDPSRDARAVSRSNSGTIQPARIQPRKLSTTTISTTINQNI
FT                 TNEKAGRLRFYVENWKTITSDDFVLKAISGYKLIFNHTPSQAKEPNIPKMN
FT                 EVESGYIDSCINEMVSSGVIQISKEEEGQFLSSIFTVPKPDGSRRFVLNLK
FT                 LLNNFILVDHFKMEDIRTALALVTPNCYFTVVDQKDAYYMIPMHKSSRKFL
FT                 KFRWKSILYEYLCLPFGLSLAPWLYTKVLKPVLAYLRSRLIVNVSYLDDLL
FT                 TVGETYAECQRATQITISLLKFLGLSINDEKSRLIPCQRVKFLGFLIDSES
FT                 MEISLPDKKKTRVLEKCQGVINMSSVPLQNLAELIGTLISSCPGVEYGQVY
FT                 TRKLEMEKIDGLFISNQNYNHKVTISDEGVADLNWWIKNISHSRKKIRQEA
FT                 YFLTLTTDASLTGWGATTARRSTRGHWNFNEAKRHINELELLAIYNALLAL
FT                 VDFTDKSVLIRSDSTTAISYINKYGGCRSYQCQELAKIIWQWCEKRRIIIF
FT                 ASYISTKDNIVADSLSRLDIDSYDFKLGDKYFYNICNKLGSPVIDLFASNK
FT                 TNQCARFVSWFPCPDAEWVDAFTKPWGEFFFAFPPFKLLTRVLKKIREEHC
FT                 QGIVVAPNWPNQPWFPLFHNLKISKIIIMKPANDLLFCPYSNRSHPLSFKT
FT                 TLMAALLSANHLKY"
FT   CDS           3422..4420
FT                 /product="DIRS-1_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="ESSTEFQDNINGSTIVSQSFKILNLPDNVISILKSSC
FT                 SASTWKQYESSLKKWISFCNVMKWNVYDNELSKYLSFLANMYESGLSYASI
FT                 NTARSALSAVFPDIDNCKIGEHRLITQFMKGISKLRPPTPKYSLTWDSSKM
FT                 LDVLKSLDSETIPLRELTLKVLALLALVTAQRAQVFSQIQIHDILWGDPIQ
FT                 IKIPSILKTTTIKNPNPILIIPSFENKSLCPIFNLKMYVEKTKILRGESAN
FT                 LFISFVSPYKPVTSQTISKWLCKTLDMAGVDSSIYTGHSFRHAATSKASSR
FT                 GVNVDAIFQRVGWSNRSNVFAKHYNKKIDDRTTFANSLLSN"
XX
SQ   Sequence 4972 BP; 1657 A; 843 C; 938 G; 1534 T; 0 other;
     tatatttctt cttcctccaa ctacatatat cactgtaata actgttgtag tgattgatat        60
     cacgtagtgt gtgcagtccc atattttcaa agtgcatgcg cacaatgaaa aagtaagaag       120
     aaggagccct acttgccacg tcgcgggtcc ggtaatcttc actgttgatt tcatggtagt       180
     gttgtgctgt cgccatctta gcccgtgaaa aattgtaatt ttttaaagaa gatttccagt       240
     ttctttttca acataagagg tcccattcgg tcaccaggta agtctagagt aattcccatg       300
     aattgagggt atttttattt agaaaatata attaattgtg aagaattaaa caaaataact       360
     ccgagccacc ttgaaaaggt gacggagacg tggtgtcccg cgctggccca cattaatttt       420
     aatttccgat gttttttggt tttaacagcc atgtcggatt ataacgagtt aaaaggtcaa       480
     gtagaatcaa tgtccatatt tattgcgact cagcaaaaag agctggattc tttgaaagaa       540
     gcagtaggga agaatgatat tcctcaagga cagactccaa aggacaaggg ttggtcactt       600
     ggtctctcag acgaggagga caattctcag gagaaggaat ctgagaattt tgcaaatatg       660
     tttcaagata aaccacatgg taataatatt gcacgaaaaa taaaatataa ttttatctct       720
     aagtttaaaa tctaagaatg aattcattaa ttagatggtc aggacgataa cgagctggta       780
     gagattatga aagatattga gggcagcatt gaatatggtc ccgatctgct tccacaaatc       840
     tctgaggggt tttcaaaaac agttagtcgt cctttgacaa aggaaactgc ctcaaaactc       900
     aaagatcaga taaaaatccc gtccaactgc aagggttttg ctgttccgaa aatgaattct       960
     gaaatctggg cccatttacc tacgggggca aggctggcag atatccaaac tcaacaagtt      1020
     caacaatcaa ttagctttgg tctaattaca atggccgaaa ttgcaaatga ggttgccact      1080
     cactcaaatg agatccctca agaggtgaag aaaaggattt tgaaattagc tattgatgga      1140
     ggaaatattt tgggcgatca gctgcaggcg agcaatatga aacgccgtca ggaagtgaaa      1200
     aaattaatta atccagagta cagtgcaatt tgcaacaaac aggtgattat tattatttat      1260
     ttactcaata tgttacatcg taataatatt ctgcaatgag aaataattga taaacagttg      1320
     ccagtatcgg aatatctttt tggtgacaat ttgagcgaaa ctttaaagac gtcaaaagca      1380
     gcttcaactg ttattcgatc gtcaatgaca aggactactc ggttccgtcc atacaatttc      1440
     tcaagaaata ccggaaattt aaacttccaa cgcccgttcc cacgattcca gacccatcga      1500
     gggacgcaag ggcagtttcg aggtcaaact cggggacaat tcaaccagcg aggattcaac      1560
     cgaggaaatt atccacaacg acaatttcga caaccataaa tcaaaatatt acaaatgaga      1620
     aggcaggtag attaagattt tatgtagaaa attggaaaac tataacttct gatgattttg      1680
     tacttaaggc tatttcgggc tataaattaa tatttaatca cacacctagt caggccaaag      1740
     aacctaatat ccctaaaatg aatgaagttg aatcaggtta tattgattca tgtattaatg      1800
     agatggttag cagtggagtt attcaaatct ctaaagaaga ggaaggtcaa tttttatcta      1860
     gcattttcac agttcctaaa ccagacggtt ctcgtaggtt tgttcttaat ttaaaacttt      1920
     taaataattt tattctggtt gatcatttca aaatggaaga tataagaact gcactcgcat      1980
     tagtgacacc aaactgttat tttaccgttg ttgaccagaa agatgcttat tacatgattc      2040
     caatgcataa gagttctagg aaatttttga aatttcggtg gaaaagtatt ctatatgaat      2100
     acttatgtct tccatttgga ttgtcattag caccatggct atacacaaag gttttaaaac      2160
     ctgttctggc ttatttgcga tccagactta tagttaacgt atcatatctc gatgatttgc      2220
     taacagtagg agaaacatat gcagaatgtc aaagggctac tcagataaca atttcattac      2280
     ttaaattctt gggtttgtca attaatgatg aaaaatcaag attgattcct tgccagagag      2340
     taaaattctt aggtttctta atagattcag aatcaatgga aatatcttta ccggacaaaa      2400
     agaaaacacg agtattagaa aaatgtcagg gtgtcataaa tatgagttct gttcctcttc      2460
     aaaatttagc tgagttgatt ggtacattaa tatcatcgtg tccgggagta gaatatggcc      2520
     aagtatacac tagaaagtta gaaatggaga aaattgatgg cctttttatc tcaaatcaga      2580
     attataatca caaggtcacc atttctgatg aaggagtcgc agatttaaat tggtggataa      2640
     agaatatttc tcattctaga aagaaaatca ggcaggaagc atatttttta accttaacaa      2700
     cagatgcatc tctaactggc tggggtgcaa cgacagcaag aagatcaact aggggtcatt      2760
     ggaatttcaa tgaggctaaa aggcatatta acgaactaga gttacttgca atttataatg      2820
     cattgctggc gttggtagat tttacagata aatcagttct tattaggtca gacagcacca      2880
     ctgcaatatc gtacataaat aaatatgggg gctgcagatc ctatcaatgt caggagcttg      2940
     caaaaattat atggcagtgg tgtgaaaaga gaagaattat aatatttgct tcttacatta      3000
     gcacaaagga taatattgtt gctgattcac tttcacgttt ggatatcgat agttatgatt      3060
     ttaaattagg ggacaaatat ttttataata tttgtaacaa attaggtagc cccgtaattg      3120
     atctctttgc ctccaataaa acaaatcaat gtgctcgctt cgtttcttgg ttcccttgtc      3180
     cggacgctga atgggtggac gcatttacta aaccatgggg agaattcttt tttgcatttc      3240
     ctccctttaa attactcact cgagttttaa agaaaatcag ggaagagcat tgccagggta      3300
     ttgtagttgc cccaaattgg ccaaaccaac cgtggtttcc attatttcat aacttaaaga      3360
     tttcaaaaat aattattatg aaacctgcta acgatcttct tttttgtcca tattctaata      3420
     ggagtcatcc actgagtttc aagacaacat taatggcagc actattgtca gccaatcatt      3480
     taaaatattg aatctgccag ataacgtcat ttcaattcta aagtcatcat gtagtgccag      3540
     tacttggaaa cagtatgaat cttctcttaa aaagtggata tcgttttgta atgttatgaa      3600
     atggaatgta tatgataatg aattgtcaaa atatttgtcg ttcttagcta acatgtacga      3660
     gtcaggttta agttatgctt ctataaacac tgctagatca gctttgtcag cagtttttcc      3720
     cgatattgat aattgtaaaa taggcgaaca taggttaatt actcagttta tgaagggtat      3780
     tagtaagtta agaccgccca cacctaaata ttcattaaca tgggattcca gtaaaatgct      3840
     cgatgtgttg aaatcattag atagtgaaac aattccatta cgagagttga ctcttaaggt      3900
     attagcatta ttagcgttag ttacggctca aagagcacaa gtgttttcac aaatacagat      3960
     acacgacatt ttatggggag atccaattca aatcaagatt ccttcaattc taaaaacaac      4020
     tacgataaaa aatccgaatc caattttaat catcccttct ttcgagaaca aaagtttgtg      4080
     tccgattttc aatttgaaaa tgtatgtaga aaaaactaaa atattgagag gagaaagtgc      4140
     taatttattc atatcttttg tttctccata caaaccggtc acatctcaga ccattagcaa      4200
     atggttatgt aaaactttag atatggctgg agttgattca agtatttata caggtcacag      4260
     ttttaggcac gctgcgacct caaaggcatc aagtcgtggg gtaaatgttg atgccatttt      4320
     tcaaagagtt ggctggagca atcgttcaaa tgtatttgct aaacattaca ataagaaaat      4380
     agatgataga accacttttg caaattcttt gctaagtaat taaattaaaa taatgatata      4440
     atatttaagt ttgtatttac atatgtaaca ggtcaaggat gcacagcaaa ttatttggta      4500
     gtaaaaactg tttaaacaag ttacatattt gttcggtttt ttattttttc gaatttcata      4560
     tttactttaa acaactacaa cagttattac agtgatatat gtagttggag gaagaagaaa      4620
     tataattgtg gattttgcga gggcggccgt aggccgcgtg aagcaaaatc aagattatat      4680
     gattcttccg gaaacggaat atatcactgc cctccatccc tcccccacta attaaaatat      4740
     gaaattcggt gactttgaaa tagtgaagat taccggaccc gcgacgtggc aagtagggct      4800
     ccttcttctt actttttcat tgtgcgcatg cactttgaaa atatgggact gcacacacta      4860
     cgtgatatca atcactacaa cagttattac agtgatatat tccgtttccg gaagaatcat      4920
     ataatcttga ttttgcttca cgcggcctac ggccgccctc gcaaaatcca ca              4972
//
ID   DIRS-1_HeAr repbase;    DNA;    INV; 5067 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5067
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5281-5281 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 175-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           300..1502
FT                 /product="DIRS-1_HeAr_1p"
FT                 /translation="MDSVSNTCENRERDAAAPDGGQSSSTSSRALESSSSS
FT                 SSEFEEGTASPLPNKRSRASARNRKYKSKHVRTDPRVDTLMSQMAYLSNYL
FT                 SLYQSGYCYNGRAAPNSTITSSQPSAAKDSCAEQFITLPAQPESLSLNLGA
FT                 LSTEIDSKKNIPPSDKDRFNELNKLQQFDSQAWKGIRYKQALQGCLATPGF
FT                 TGLMVNDELCHFNKNKDYLAATEMFLAGISNKVLEQRQLLKSGLQNIVDWA
FT                 SADPTNLNPKSLVDKMSEIFGPGSSSYKNSETTMQIICGKRSESIEVRRDR
FT                 ILKEISNTNLRNTLRNVPPSAEHLFSREALQPIIQSLGGSQVWLNTPTYLK
FT                 ERKVTERGEPFQNRKNNFKNKSRKFDKKFKHTSNKNRPFRQRSTNTANNDK
FT                 STRSKEE"
FT   CDS           1309..3384
FT                 /product="DIRS-1_HeAr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="ILQPTSRKGKLQSGVSPFKIEKIILKISLESLIRNLS
FT                 ILLIKTGPFVNVPLTQPITISPPDLKKNDSHRVFRGGCLKFSTERWAQLGA
FT                 NQFILNTIANYRLPFRSKPPLTYPGQNFLKCIATKVSLEMTRVIQDLKMQG
FT                 ILEKPAVVDPGFFSKMFLIKKADGGLRPIFDLKALNRYIATKHFYLISQLD
FT                 IVTFLQANDWLVKIDLHQAYFHLCVAETHRRFLRVVYNGEILQLTALPFGL
FT                 SSAPRVFAAVSNWVAEILRNRGIRLLVYLDDFLLACQDRSKLMAQVAETLA
FT                 VLESLGWHVNYQKSVTEPTHRLEYLGLVWDTQYLTIALPIRKVEGIKASLT
FT                 KLLKRDNCSLRELQSVLGKLNFANYAIPQGRLHCRKAQLFLRKFSRRNQKR
FT                 NLSSGVREDFRWWLEAVEGCPNPLLKKEVTHFLTTDAADAGWGASLNSKYL
FT                 SGKWATNQKAWHSNLKEMYAVYAVIRSQGSLLQNAHILVQTDNRTLVAYIR
FT                 NQGGTRSLKLLGLTTQLLELTCRLNITLTAYHLPGNLNGIADCLSRGKSVP
FT                 EWHLLPPATEAVFRQWGVPEIDLFATRDTAVVSRYVSLDSRDGSAEFCDAF
FT                 SQTWDFQTAWVFPPPSMMPRVLAHLNKARGTYFVIAPQWTQCFWFPDLKTR
FT                 AQVPPLPIENLREVLLDRTTGLPPPSVDKLVLQAWKIGGGEIK"
FT   CDS           1506..4340
FT                 /product="DIRS-1_HeAr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="LSPGVQRRLPKILHGEMGSVGSKPVHFKHYSQLPLAI
FT                 QKQTSPDIPRSELFKVYSHQSFPGNDKSDSGFKDAGHPGEASSGGSRFLLQ
FT                 NVFNKEGGWGIETHLRPQGFEQVHSHKAFLPNFTIRHSYLSSSKRLASEDR
FT                 SSPSLFPFVCRGDSQTVFEGCLQWRNSPVNCSAIWPIIGAPCICGSLKLGG
FT                 RDPQESRHSSFGLFGRLPPSLSGQIQVNGTSCGNVGRLGVFGMARELPEVG
FT                 DGTNTQVGILGPGLGYSVPNNRLAHQKSRRNKSLPDKAIKAGQLLVKRVAE
FT                 RVGKTKLRQLCDSPGPSSLSKGPTLPEKVLPEKPEEKLEFRSARGLPVVVG
FT                 SSRGLSKPVTQERGNAFLDHRRSGCGLGSKSKQQVSLRQMGHEPKSLALEP
FT                 KRDVCRLCGNKVTGVIVTECPHFGSDRQSDSSSVHKESGRDSVLEAVRPNN
FT                 PVVRVDLSAEHNADSVPPARKPKRHCRLPVKGKVSTRVAPAATSHGGSVQT
FT                 MGGSRNRSLRYKRHGSSFKVCQSRLKGWLRRVLRRLQPNLGLSDSLGISTS
FT                 KHDAQGSGTSEQGKRDILCDSATVDPVLLVSRPEDTRASTPTSHREPEGGA
FT                 AGQDDGTTSTVSGQAGTSGLENWGWGDQVKDWSTDEQRLLRSSWRPSTINT
FT                 YSAPLKRWILWCESHGVDNKCPEGKDLARFLANLYLEKGFAYSTVMLHKSA
FT                 VSTYCAPRVENLAKNXFVQQVLKAVSLAKPRPAKLPVWDVKILYEWLKSSE
FT                 FPDTLFYQSRHTALILLLASGRRLHDLTLLELGDQGYAETEDTVTFWPKFG
FT                 SKTDTSSHRQSGWLLMKHQDSKLCPVTNVKKLVKISETRRNQTTNVNSLFI
FT                 SITGDTKPASKTMISGWVRSAFKLAQIDGYSPGSIRSAVASRGWLDNRPIQ
FT                 EILERGNWKCVETFSKYYCRNINKPVSEDVPGLLYNNFKTM"
XX
SQ   Sequence 5067 BP; 1513 A; 1014 C; 1162 G; 1377 T; 1 other;
     tattatatgt cttcgaaaac acagcaatga tgtgaagaag cagtcctatg attctgtgaa        60
     aatatcgaga atatcagtca tatctgtata caaatcgaga atatcctccc aatttctgtc       120
     accacagggc tatctgtcat actttaccgc caaattttca accggcgcca ttgcattctt       180
     gtgattcgtt caaaacgcat gaaaaatttt ttgtcaactg caaaaagttt aaaaagtgag       240
     tgtaaaagtg agtttttcag tgcttttact ttagaaaaca cggcagttta tataataaaa       300
     tggactcggt gagtaatacg tgcgagaacc gcgagcgaga cgcggccgct ccggatggag       360
     ggcaatcgtc gtcgacaagc tcgagggcgt tggaaagtag ttcctcctca tcctcggagt       420
     ttgaggaggg cacggcttcg cccttgccta ataagcgttc tcgtgcgtcg gcgaggaacc       480
     gtaagtacaa gtctaaacat gtccgtaccg atcctcgtgt tgatactttg atgtcgcaaa       540
     tggcgtattt gtctaattac ttaagtttat atcagtcagg ttactgctat aatggtaggg       600
     cagcgccaaa tagtacaata acgagctcgc agccttctgc tgctaaggac agttgtgcgg       660
     aacaatttat tactttgcct gcacagcccg agtcgctctc tctaaatttg ggtgccttaa       720
     gcaccgagat agacagtaag aaaaatattc cacctagtga taaggatagg tttaatgagt       780
     taaataagct gcaacaattt gactcgcagg cttggaaggg cattagatac aagcaagctt       840
     tgcaaggttg ccttgcaacc ccaggattta caggccttat ggtcaatgat gagttgtgtc       900
     actttaataa gaataaggat tatttagctg ctactgaaat gtttttagct ggtatatcta       960
     acaaagtctt agagcaaaga caattgttga aatcgggttt acagaatatt gtagattggg      1020
     ctagcgcgga tccaactaat ttgaacccta agtcattggt ggacaaaatg tcagagattt      1080
     ttggacctgg gtcttcgagt tacaaaaatt cagagaccac aatgcaaatt atttgtggaa      1140
     aacgatctga atctattgag gttaggcggg acaggatttt gaaagaaatt tcaaatacga      1200
     accttaggaa cacattgagg aatgttccac ctagtgctga acatttattt agcagagagg      1260
     cactacagcc tattatacag tccctcggag ggtctcaggt ctggctgaat actccaacct      1320
     acctcaagga aaggaaagtt acagagcggg gtgagccctt tcaaaataga aaaaataatt      1380
     ttaaaaataa gtctagaaag tttgataaga aatttaagca tacttctaat aaaaaccggc      1440
     cctttcgtca acgttccact aacacagcca ataacgataa gtccaccaga tctaaagaag      1500
     aatgactctc accgggtgtt cagaggaggt tgcctaaaat tctccacgga gagatgggct      1560
     cagttgggag caaaccagtt cattttaaac actatagcca attaccgctt gccattcaga      1620
     agcaaacctc ccctgacata ccccggtcag aactttttaa agtgtatagc caccaaagtt      1680
     tccctggaaa tgacaagagt gattcaggat ttaaagatgc agggcatcct ggagaagcca      1740
     gcagtggtgg atcccggttt cttctccaaa atgtttttaa taaagaaggc ggatggggga      1800
     ttgagaccca tcttcgacct caaggctttg aacaggtaca tagccacaaa gcatttttac      1860
     ctaatttcac aattagacat agttaccttt cttcaagcaa acgactggct agtgaagata      1920
     gatcttcacc aagcctattt ccatttgtgt gtcgcggaga ctcacagacg gtttttgagg      1980
     gttgtttaca atggagaaat tctccagtta actgctctgc catttggcct atcatcggcg      2040
     ccccgtgtat ttgcggcagt ctcaaactgg gtggcagaga tcctcaggaa tcgaggcatt      2100
     cgtcttttgg tctatttgga cgacttcctc ctagcttgtc aggacagatc caagttaatg      2160
     gcacaagttg cggaaacgtt ggccgtcttg gagtctttgg gatggcacgt gaattaccag      2220
     aagtcggtga cggaaccaac acacaggttg gaatacttgg gcctggtctg ggatactcag      2280
     tacctaacaa tcgccttgcc catcagaaaa gtagaaggaa taaaagcctc cctgacaaag      2340
     ctattaaagc gggacaactg ctcgttaaga gagttgcaga gcgtgttggg aaaactaaac      2400
     ttcgccaact atgcgattcc ccagggccgt cttcactgtc gaaaggccca actcttcctg      2460
     agaaagttct cccggagaaa ccagaagaga aacttgagtt ccggagtgcg agaggacttc      2520
     cggtggtggt tggaagcagt agagggctgt ccaaacccgt tactcaagaa agaggtaacg      2580
     catttcttga ccacagacgc agcggatgcg ggctggggag caagtctaaa cagcaagtat      2640
     ctctcaggca aatgggccac gaaccaaaaa gcctggcact cgaacctaaa agagatgtat      2700
     gccgtttatg cggtaataag gtcacagggg tcattgttac agaatgccca cattttggtt      2760
     cagaccgaca atcggactct agtagcgtac ataaggaatc agggcgggac tcggtccttg      2820
     aagctgttag gcctaacaac ccagttgtta gagttgactt gtcggctgaa cataacgctg      2880
     acagcgtacc acctgccagg aaacctaaac ggcattgcag attgcctgtc aaggggaaag      2940
     tcagtacccg agtggcacct gctgccacca gccacggagg cagtgttcag acaatggggg      3000
     gttccagaaa tagatctctt cgctacaaga gacacggcag tagtttcaag gtatgtcagt      3060
     ctagactcaa gggatggctc cgcagagttc tgcgacgcct tcagccaaac ttgggacttt      3120
     cagacagctt gggtatttcc acctccaagc atgatgccca gggttctggc acatctgaac      3180
     aaggcaagag ggacatactt tgtgatagcg ccacagtgga cccagtgctt ttggtttccc      3240
     gacctgaaga cacgcgcgca agtaccccca cttcccatag agaacctgag ggaggtgctg      3300
     ctggacagga cgacgggact acctccaccg tcagtggaca agctggtact tcaggcttgg      3360
     aaaattgggg gtggggagat caagtaaagg actggagcac agacgaacaa agattgttga      3420
     gaagtagctg gcgcccctcc actattaata cgtatagtgc acctttaaaa agatggatac      3480
     tttggtgtga atcccatgga gtggataata agtgcccaga gggcaaggac ctagccagat      3540
     ttttagctaa tttatactta gagaaaggtt ttgcatacag cacggtaatg ttgcacaagt      3600
     ctgctgtctc aacttactgt gcacctaggg ttgagaactt ggccaaaaat tktttcgttc      3660
     agcaggtttt aaaggcagtg agtctagcta aaccacgccc agcaaagcta ccagtatggg      3720
     atgttaaaat attgtatgag tggttaaagt cttcagaatt tccagacact cttttttatc      3780
     aaagcagaca cactgcattg attcttttac ttgcatctgg ccgaaggttg catgatctta      3840
     cacttttgga gcttggtgat caaggatatg ctgaaactga ggacacagta acattctggc      3900
     caaaatttgg ctcaaaaaca gacacaagtt ctcatagaca atcaggctgg cttctcatga      3960
     agcaccaaga ttctaagctt tgcccagtca ctaacgttaa gaagttagtc aagatttcag      4020
     agactagacg caatcaaact acaaatgtta attccctttt tatatcaatc accggtgata      4080
     caaagcctgc ctctaagacc atgatctcag gatgggtgag gtcagccttc aaattggcac      4140
     agatagatgg ctactctcca ggcagcataa ggtcagcagt ggcctccagg ggatggctag      4200
     acaatagacc tatacaggag atattagaaa gaggaaactg gaagtgtgtg gaaacctttt      4260
     ctaaatatta ttgtagaaat ataaataagc ctgtcagtga ggatgtccct ggtctacttt      4320
     ataataattt taaaacaatg tgattaatag tgattatatt tgattattta tgataatttg      4380
     attttgatct caattattaa ggctgaacag ctgaagtgtt tatgtttgaa aattatttgt      4440
     taatttgtgg cagttaaact gcatttttat ttatcaatcc taagaaggaa gttatgtttt      4500
     ttgttttcat attgaattgt ttaatttgag tttcttggta agaaaaatat aaatatttta      4560
     aactaatagt gtggttggat tttgttctta acattttccc agcaaatatt gaaagttaaa      4620
     gatggttcaa agagagtgat aagaaggttt gttataagga aatacctagt aaattatatt      4680
     actctcacat tgcattcttg tgttttataa tttctgatca ccagcagata tcaaacaggt      4740
     cttcacatca ttgctgtgtt ttcgaagaca tataatatga ctgttttgca ttaagacaaa      4800
     acaggtatta tatgtagaag aaaacacagc aatgagccaa ggttcttgct gatgatgaag      4860
     actgcaatgg cgccggttga aaatttggcg gtaaagtatg acagatagcc ctgtggtgac      4920
     agaaattggg aggatattct cgatttgtat acagatatga ctgatattct cgatattttc      4980
     acagaatcat aggactgctt cttcacatca ttgctgtgtt ttcttctaca tataatacct      5040
     gttttgtctt aatgcaaaac agtcata                                          5067
//
ID   DIRS-1_HSal repbase;    DNA;    INV; 4978 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 19.04, Created)
DT   11-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DIRS retrotransposons in Harpegnathos saltator, consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   DIRS-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4978
RA   Bao W. and Jurka J.;
RT   "DIRS retrotransposons from the Harpegnathos saltator genomes.";
RL   Repbase Reports 14(4), 802-802 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 4978 BP; 1231 A; 1247 C; 1058 G; 1432 T; 10 other;
     gattatgcta tgcgtttcgt ccgagtagaa tacatgtagt catgtcacat gactcccgaa        60
     atgaacaagc atcttcaaag atgagcgcca aaacaaaaca atttggcgcc ccgctcggtg       120
     ccgcgcgcgg cgctgtccgc tgcgcgcgca cccgtcttca ttgtgttgct tgttctcccg       180
     aacaatagca tcgagtgttt cctctcttca aattatggga aagcactctc attcaaagtc       240
     ccggaaacgg tctcgcttcc ggccacacta atctattact tttttccttc aggacattct       300
     ggcgaacgtt ctccggacac ggatacagag gtaatataac ctccagatcg aagtgtccgc       360
     gtgacgaatc ccgcggacaa cgacactgct cttccagtgt gcattctcgt tcatcagaac       420
     gtccgttgac aatttccttg gagaagaagc tggatgctct tctcaattta ctcatacact       480
     cgggctcaac ccgcacggat cggcaggagg ccgatcgtgt cgaacataac ctctccatcg       540
     gtgcggacgg tcaggaagcc tgcacggcgg aaccagatcc tccgcttggg gatatggaaa       600
     gctctaaccc tggaggtgag cctgagttaa tgtcttgagg ctgtccttcg aggcaggtcc       660
     agtgacatca tttctggact gcgaaccatt acctagagtt tggtcttgtc cgctagattc       720
     tttcatacag tgtccttcga ggcagcccag tgacatattt ctggactgca aactattacc       780
     tagagtttgg tcttgtccac tagattctct catagcgagg ctgtccttcg aggcatgccc       840
     agagccgccc atctcattct cgttgagaat aacgtttctc tggctctata tttacttgca       900
     ataatatgtt cagcgactgg ccagcaagag gaaacggagg agatagctca tccttctgtt       960
     acttttgcga aatcctctct tccggacacg acgtcacacc tcagcaagac gaagttgctg      1020
     cgtgtaagag agtttattga ggggcgatcc ggatgatgtg gccccaggtc cgccagtcca      1080
     tgagctaata cctgcgacat ggtcctccac ctttatcagt ggttaggcga gatgtttatc      1140
     aaaagtcgtc actcaaagtg ttgttgaagc cgcaattgca gcgcaagcaa acgtattttt      1200
     gaaactgcaa gcgatgctgg ccgcttaatc tctcaggtcc agcatcatat atctaaggct      1260
     agacgtggtc tgattatgcc tatgttaact tcatccgcta gaaacgttct tgatgcatcg      1320
     cctattggca atcagctttt tggtgaacaa tatttaacca aaaatgaaag acgtagcagc      1380
     agcggacaag ttagttcgca gttttaccac tctagcgcag gcgcctgcga agscgaatac      1440
     tgcaaataag agccgacctt cctttgctca taaaccctca tcacagggaa atgcgagaac      1500
     ctttgccaac aaatcaacgt ctcgtcgcca ggcaagggtt gtacctcagt cgacgagaca      1560
     tcggtcgagc tctcagacca ggagccagcg cccccgcata tagaggtaag cattgcgggc      1620
     aggcttgctc aawttttcga gatctggtca gatctcacta acgactctgt cgttttaagc      1680
     gcagtttcag gctataaaat accttttctt ataactcctc ctccccgccc atattkgcgg      1740
     gaaccttggt tgagtccatt agaacagacg ctgtgtgcag aggaaataag gcgcctcatc      1800
     tgcaagggcg ccatcgccga gaccaccttt ataacggatc aatttctctc ttcatatttt      1860
     ctcattgaaa cctcgggcaa aaaagattca ttttgaatct gaaaatcctc aacagataca      1920
     ttcttccacc tcattttaag atggaggatc tcgggactgc tacccgtcta ctgtctcaaa      1980
     actgttttat ggcaacatta gatttagaag attcttattt tctagtgcca attcatgcag      2040
     attatcgcaa atatcttcgt ttctctttcc agggacgcct ttttgagttc tgtgcattac      2100
     ctttcggcct cgccacagct ccgtataatt ttacaaaaat attacgacct atcgcagctc      2160
     acctaagcga acgaggtttc ttgtcggtta tctaccttga tgacttcctg cttttcgggg      2220
     actcgtagga acaatgctct gccaacgtga agccactgag agaaggtata tgatagctcg      2280
     gaactgtaat gatatagtma caaaatgtat agttctcccg gtgcaagaam agatttcttg      2340
     agttcctgat gaattcatct actagaatat agcttacscg aagataaacg ctagmtattc      2400
     tgggacgcct cgaagttaat tcaaaaactt tcctgcaaaa tgaatcactc tggatttata      2460
     caagttgcag ttttgttgtt aattcgcttc ccaaaggccg ggtatacctt ggcgcgagaa      2520
     caaagatttc tgggattctt gttgaattca tctactctga atataacatc acctgaggat      2580
     aaactttcag cctttttgga acgccttgag aaatactcca agaaaccttc gcctgcaaaa      2640
     ttcggaattt gctagatgaa taggcattct atatggaaat tttttcagat gcctccctca      2700
     caggttgggg tgcatctgtc ggcacgaata aaactcacga ttggtggtca tacttggaac      2760
     gcagagagca tataaatctt ctagaattaa aggctgtgga gtatgctctc agatcttttg      2820
     cgagtcattt acgctcccaa catatcttat tgcgcattga caatacaacc gctatagcgt      2880
     atattaataa agggggctcc tgtcgttttc ccaagctctc agcactcgcc aagtcaatcc      2940
     ggcaatggtg tgaagcacgt gacctatata tctttgcttc ttatatccgc tctgctgaca      3000
     acgttgtggc ggacacagag tctcgctcgg tgtccatagg caccgaatgg gagcttgctt      3060
     cctccctttt tgcaaagatt aagaaacgat tcggaccatt tgacatcgat ttatttgcca      3120
     ctcataacaa tgcaaaaggt gatacctttg cctcgtggtt tccggatccc tttgcgtttt      3180
     gcagtcgacg cttttacttt agactggggg aattctattt ttacgccttt cctcctttcg      3240
     cacttattac tagaagcttg cggaagatca tagacgatcg ggcggagggc attctagttg      3300
     ttccccgatg gccagctcaa ccttggtttc ccctcttcca ccaattatgt acatcggatc      3360
     caattcactt ccggccacac cctaatttat tactttcttc cttcaggact ccacacccaa      3420
     tcgggcacaa catttccctg gtagtaggga aattattagg caagcgttta gccgaaaagg      3480
     tttcccggac gacgccatag agacagcctt cgcatcgctt gcggcctcga cgctatcgca      3540
     atattctaag cccattcaat tgtggtggaa tttctgcact cagcatcaac ttgactggtt      3600
     ttgcccggca ataacactgg ttctctcctt cttatcttcg cagcttcgta aggttaacgc      3660
     ttatggaacc ctwaattcgt atcgctcagc gctctcgctc atcacggatg ttaatcttgg      3720
     ctcagacgac aaagtacggc gtttttcaga ggcgtwtcgg ttttaaaacc ttctaaaccc      3780
     aagcacgcac tgacatggga tccaacgcct gtcgcatatt tggcctctct ctggccccgg      3840
     ttgtctttag aacttcttac gcgcaaactt gccaccttgc waattttagc ttcagtgcag      3900
     cgtgtacaga ctctggggtt aattaagcga cgtaatattc attcctcgaa actaccgtta      3960
     ttattaaagt acctgatcgt ataaagacct ctggttcgaa ccggcctcaa ccggtcatgg      4020
     tttttccatc actttgatga tcagcctgcc ttgtcaattt tttcgttatt gcgtttatat      4080
     attagtaaga cagcgcataa ttcttcgtca gaatcctctt cggccttatt tcttagcttt      4140
     aagaagcccg tccgtaccgc atccgctcag acgattagtc gttgggtgcg actaacactg      4200
     tctgaaggag gagttgatac ctcaatcttt acgactcact ctactcgtca cgccggctct      4260
     tcggccgcgc ttcaaaaagg tatttctgtt gacgatattc gaaaagcggc aggctggtcg      4320
     tccacttcgt caactttcgc gaatttttat aaccgaccat tattacccac aactaagggg      4380
     gctgaagcga ttatcttgaa tcattaactg cgagcttaat ccttttcttt tctaaatgca      4440
     ttatgctagg agttgcgcta ataattttac ctatgcatat ttcacctcgt tttgctgcct      4500
     aacagatgca tagcgtcctt tttcttttgg tctctgtaag gccctttctt caaaaaggaa      4560
     aaaagaaata tctcacggtc acaaatcgtg gctttgaaca gctacatgta atctactcgg      4620
     acgaaacgca tagcataatt gtatgatcaa aacgaactcc tgagtgaagt tcgatcataa      4680
     ttatgcgtat gctttcgtcc gagtagagtc accctccctt tctttggaac ttcgttcgtc      4740
     gttccctccc accttcgatt tgtgacggct ttgaaccatg aagacgggtg cgcgcgcagc      4800
     ggacagcgcc gcgcgcggca ccgagcgggg cgccaaattg ttttgttttg gcgctcatct      4860
     ttgaagatgc ttgttcattt cgggagtcat gtgacatgac tacatgtaat ctactcggac      4920
     gaaagcatac gcataattat gatcgaactt cactcaggag ttcgtttgat catacaat        4978
//
ID   DIRS-1_MeUr repbase;    DNA;    INV; 4814 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the bear giant-skipper genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_MeUr.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4814
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 2805-2805 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 146/147-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           752..3340
FT                 /product="DIRS-1_MeUr_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MAKDTKDKILTQYLIPSNCALLQAPKLNIEISAAVAE
FT                 MVRTRXEKVEAAQQQLGMGITAISRAMTSLLTSDNKVEAIKTLSDGCRILC
FT                 DLHYAETQARIKMISPGLAKPFLNVIQDSERDETLFGTSLPDKIKASKTIE
FT                 KQIKKVAPPPPKLNSAVGQSSYQTRQQTQGNYYGPPRYPSARGGARGSTEV
FT                 PHGCASXNTDDCNIVGTTPSESEPAPCHNTSIAQVHAGRVKYFYHCWRQVT
FT                 NNHTILNWVLNGIPIPFRIKPYQLCVPQISWSPSEHHDMSLAINNLLKLGA
FT                 ITQVKPSCDQFISSTFLAPKANGGKRFILNLKCLNRFIPKMHFKMEDFRTA
FT                 CRLLQPNWYMATIDLKESYLLIPIDKEFRKYLRFHYIAPDSNETVTYEFNA
FT                 MPYGLAIAPRCFTKIVREVVAYLRCHGFISVCYLDDFLCLGSSYEECSRNV
FT                 KETIKLFERLGFVINYEKSELQPTKTCKFLGFIYDSTHMTMSLPGDKRTKI
FT                 ISLLNKFSKLPILSIRDYSQLIGVLVSACPAVRYGWLYTKILERQKYLLLK
FT                 RHGSFDTKVKLPGIILDDLNWWKANIYLTHNFIENPIYEMEIFTDASRTGW
FT                 GAFCNNVRVSGSWKDTELNFHINYLELLSVFLALKCFARDKSQCSILLRVD
FT                 NTTAISYINRMGGIQFPHLNTLSRDIWQWCERRKLWIFASYINSKENVEAD
FT                 EESRRVNLDVEWELSNAAFSYIVQRLGQPEIDLFASRTNAKCHEYVSWKQD
FT                 PDAVSVDAFTISWNTKLFYAFPPFSLLIKCINKIIQDEATGILVFPMWPAQ
FT                 AWYPQLMDLLVSEVVILNPRPNLVLSHCRRQHPLHQTLTLGAALLSGSRSS
FT                 TAARRSPPCH"
FT   CDS           3103..4254
FT                 /product="DIRS-1_MeUr_2p"
FT                 /note="tyrosine recombinase."
FT                 /translation="NNSRRSYRDSRLPYVACSGLVPAVNGSACLGGGYTEP
FT                 PAKSSFVALQTTTPAPPDAYPGSGAALRLAFLHRGAPLAALPLMLASISSS
FT                 TLQQYGICYKLWWHFCEENNINVLQGSSSEVTRFLTEQFESGASYGTLNNH
FT                 RSALSLLLGNNLSADDGIKRLLKGVFKLRPSLPRYSHTWDPQQVLNCISEW
FT                 VPNNDLSLEKLTKKVVILLALCTAHRVQTFSLIRLKNIKINTDGIKIFISD
FT                 IIKTSGIGRVQPVLDLPYFAENPSICPATTMIDYMSMTKDLRPSGADHLLI
FT                 TVKRPHRNATAQSISRWIKQTLCACGIDVAQYGAHSARHAATSTAHAAGLS
FT                 VDLIRKTAGWSASSQTFAKYYHRPMVKESNFAKSVCLNNNS"
XX
SQ   Sequence 4814 BP; 1475 A; 1012 C; 971 G; 1353 T; 3 other;
     ataatatttc gtggtttcat tttcgatata aattaacaag tagtcctttg tcctaccagg        60
     caacactcgc acgcattaaa agatgccctc ttttattttt tatttttatt ttatgtctac       120
     ctcctacctg ctcgctagtc tattcgtcat tctttttccg tgcgaggcaa cgagtgcacg       180
     cgctccttct tttgatactc acggtagtct attgcagaat tttacttatt ctccatgcct       240
     aaaaggacgt acgacgaaaa aatggagtat tatttgagga aaatggagaa attgaaagaa       300
     aaacgccgtc gtaagcgacg tcgtttaacc gaatcttttt cctcgtccga tcataacgaa       360
     ggtaagtcag tgtaattaat acgtttatta tgggccttac cgtacaagta ctattcaaag       420
     tgagagtttt gtcacggttc ttatgccata gattcaaatt tgaacacggc aaaataatta       480
     cgcgccatag attcctaagc gaacacggcg tttataaatt agcaaaaatt ttaacgatac       540
     cccgtttgag cccaacacta ataagcctga atgtagcgat ataccgccac catcagtgca       600
     atgcgagcca gtccagactc cggatgactc gagcgcatta gatcccgaaa ttttgtcagc       660
     cctcggggaa gcgaccgacc caggtcccag ttggggccca gaaatacata ataacttgac       720
     acaattatgg caaccattgc tcaaaaaggg aatggcaaag gataccaaag ataagatatt       780
     aacacagtat cttataccta gtaactgtgc attattacaa gccccgaaat tgaatatcga       840
     gatctcagcg gcagtcgccg aaatggtgag gacccgggam gaaaaagtcg aagccgccca       900
     acaacaactg ggcatgggta ttacagcgat aagtagggct atgacgtcat tgttaacaag       960
     tgacaataaa gtggaggcaa ttaaaacgct tagtgatggc tgccgaattt tatgtgactt      1020
     gcattatgca gaaacacagg ctcgaataaa gatgatctcg cctggtttgg ccaaaccctt      1080
     cctcaatgtc attcaagaca gcgagagaga cgagacgttg tttggtacaa gtctgccaga      1140
     taaaataaag gcctcaaaga ccatcgaaaa gcaaataaaa aaggttgcgc caccaccacc      1200
     aaaattgaac tctgccgtag gtcaaagttc atatcaaacg cgtcaacaga ctcagggaaa      1260
     ctactacggg cctcctcgtt acccgtcggc cagggggggg gcgagggggt caacggaggt      1320
     tccccacggc tgcgcgtcga mcaacacaga cgattgcaac atcgtcggca caaccccgag      1380
     cgaatcagaa ccggccccgt gtcacaacac gtccatagcg caggtacacg caggtcgcgt      1440
     caaatatttt tatcattgct ggcgtcaggt tacgaataat catactattc ttaactgggt      1500
     cctgaacgga ataccaattc cttttagaat taagccttat caactctgtg ttcctcaaat      1560
     ttcttggtct cccagtgaac atcatgacat gtcattggct attaataact tgcttaaatt      1620
     aggtgctata acacaagtca aaccaagttg tgaccagttt atttctagta catttttggc      1680
     tccaaaagca aatggaggaa aaaggtttat tttaaatctc aaatgtttaa accgtttcat      1740
     acctaaaatg cattttaaaa tggaggattt tagaacagct tgtaggttat tacaaccaaa      1800
     ctggtatatg gcgaccatag acttgaaaga gtcgtactta ctcataccta ttgataaaga      1860
     gtttcgtaaa tatcttcgtt tccattacat cgctccagac tcaaacgaga cggtcactta      1920
     cgagttcaac gcgatgccat atggactagc aatagcaccc aggtgcttta caaaaattgt      1980
     tagagaggtt gtggcttatc tacgttgtca tggatttata tcagtctgtt acttagacga      2040
     ttttctttgc ctcggtagca gttatgagga atgtagccga aatgtaaaag aaaccataaa      2100
     attatttgaa cgtttgggat ttgtaataaa ctatgaaaag agtgaactac agccaactaa      2160
     aacttgtaaa tttttaggat ttatttatga tagcacacat atgactatgt ctttacccgg      2220
     ggataaacgc acaaaaataa tcagcttact aaataagttt tctaaattac cgattctttc      2280
     aatacgagat tattcccagt tgataggagt actcgtttca gcatgcccag cggtgcgtta      2340
     cgggtggtta tacactaaaa tattggaacg acaaaagtat ttattattaa aacggcatgg      2400
     ttctttcgac acaaaagtta aactccctgg tataatttta gacgacttaa attggtggaa      2460
     ggcaaatatt tatttgacac ataatttcat agaaaatcct atttatgaaa tggaaatatt      2520
     cacagacgcg tcacgcaccg gctggggggc attctgtaac aatgtaaggg ttagcggttc      2580
     ttggaaagat actgagctta atttccacat taattattta gaattattgt ctgtttttct      2640
     agcccttaaa tgttttgcgc gggataaatc acagtgttct atcttacttc gtgttgataa      2700
     cactacagcc ataagctaca taaaccgcat gggcggaata caattcccac atttaaatac      2760
     actttctcgt gacatttggc aatggtgtga gagaaggaaa ctttggatat ttgcttccta      2820
     tataaacagt aaggaaaacg ttgaagccga tgaggaatca cgcagggtaa acctggacgt      2880
     agagtgggag ttgtcaaacg ctgcattttc ttacattgtg caaaggttag gtcaaccaga      2940
     aatcgattta tttgcctctc gcaccaatgc taagtgtcac gaatatgtgt cctggaaaca      3000
     ggatcccgat gccgtaagtg ttgatgcatt tacaatttct tggaatacta aattatttta      3060
     cgcattcccg cctttttctt tattaataaa atgcataaat aaaataattc aagacgaagc      3120
     tacagggatt ctcgtcttcc ctatgtggcc tgctcaggct tggtacccgc agttaatgga      3180
     tctgcttgtc tcggaggtgg ttatactgaa cccccggcca aatctagttt tgtcgcattg      3240
     cagacgacaa cacccgctcc accagacgct taccctggga gcggcgctgc tctccggctc      3300
     gcgttcctcc accgcggcgc gccgctcgcc gccttgccat tgatgctggc ctcgatatcc      3360
     agcagtacct tgcagcagta tggcatttgc tacaagcttt ggtggcattt ttgtgaggaa      3420
     aataatatta acgttttaca ggggtcctcg tccgaagtta ctcgattttt aaccgaacaa      3480
     ttcgagagcg gcgcatccta tggtacgctt aacaaccatc gctcggctct gtctttgtta      3540
     ctgggaaaca acctatctgc ggatgatggt attaagagac tcctgaaagg agtgtttaag      3600
     ttgaggcctt ccttgcctag gtactcacac acctgggacc ctcaacaagt gttaaattgt      3660
     atttccgagt gggtacccaa taatgattta agtttagaaa aattaactaa gaaagtcgta      3720
     attttgttag ctttgtgtac tgcacataga gtgcagactt tttcattaat cagattaaaa      3780
     aatattaaaa tcaatacaga cggtatcaaa attttcatat cggatattat caaaacatca      3840
     ggaataggga gagttcagcc agttttagat ttaccatatt ttgcggaaaa cccgtcgatt      3900
     tgtccggcta caacaatgat agactatatg tcaatgacaa aagacttgag gccttcgggt      3960
     gccgatcacc tcttaataac tgtgaagcgt ccacacagga acgcgacagc acagtcaata      4020
     agcaggtgga tcaagcaaac gttgtgcgcg tgcggcatcg acgtggcgca gtacggggcc      4080
     cacagcgccc gccacgccgc cacgtcgacg gcgcacgccg ccggcctcag cgtcgacctc      4140
     atacgcaaga ccgctggctg gtctgcttcc tcccaaacct tcgctaaata ctatcatcga      4200
     cctatggtaa aagaatcaaa cttcgcaaaa tcagtttgtt taaataataa ttcgtaaaaa      4260
     ttgattgtta tattattact gatttatgat gttattttta atgtaacaaa tactttctct      4320
     gttacttata gaattaaaaa tatctataat gacaatcgta tctcgtgttt tatttgtagg      4380
     gcacctactc ataaggtacc taccctacaa atatttacaa aacggtatct ctaaacatct      4440
     acttgttaat ttatatcgaa aatgaaacca cgaaatatta tatatgatca cgcgaacttc      4500
     tcaagtgaag ttcgatcaat ataatatgag tggtttcatt tgaagatata aatcacccaa      4560
     cccgcccgaa acccacgttt tgtataaaca cgagattata acctaagttg catctctgaa      4620
     aagaatgacg aatagactag cgagcaggta ggaggtagac ataaaataaa aataaaaaat      4680
     aaaagagggc atcttttaat gcgtgcgagt gttgcctggt aggacaaagg actacttgtt      4740
     aatttatatc tkcaaatgaa accactcata ttatattgat cgaacttcac ttgagaagtt      4800
     cgcgtgatca tata                                                        4814
//
ID   DIRS-1_MoPha repbase;    DNA;    INV; 5269 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the pharaoh ant genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_MoPha.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5269
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 649-649 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 131-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           951..1928
FT                 /product="DIRS-1_MoPha_1p"
FT                 /translation="MVNPTKVNSAVVMQNHDPNGVATTQSNISNEGQLTPK
FT                 AGENSAPPNNQEADVSTQGNEVVIEDLDIEILEAIGKRVAEDRVLAPSIPK
FT                 SIAVRLEDILKKGLPKEEKEKLIKEHAPPKNCTLIDPPKLNDEIKVSVMET
FT                 TTKRDDRIIEKQKKITACLALMGSAIVDIINSNKTERENPKLPPTQIELIK
FT                 KISEATRLLADLQRDETLTRRSLILAVINSSQKEVLQSSTADEWLFGQKLG
FT                 DRLKAAKSIERSSKDLKANPKNTKKTKNFKAPPRRQPFKPKTSGGYRNKSY
FT                 NRNHPNKKNWGGQNEENRSSPKSQTPAQQKKSQN"
FT   CDS           1745..3838
FT                 /product="DIRS-1_MoPha_2p"
FT                 /note="reverse transcriptase, and ribonuclease H."
FT                 /translation="ENKKLQGPASTSTLQTQDVRRVSKQKLQSKPSQQEKL
FT                 GRSERGKSQQSQITNSSTTEEITKLSDVSRPAGRLKFYLEEWKALTTDSRI
FT                 LEWIEGYKIPFARSVFQNTNPKEPMWSLTEKNTIREHIEQLISKEVVSKSH
FT                 SQKNQFLSSIFLIPKPDGSSRLILNLKKLNKFIDTDHFKMEGYKIASKLVS
FT                 HNCYMCRLDLKEAYYTIPIDKGYRKYLSFLFEDKLYEFNCLPFGLNTAPYV
FT                 FTKIMKPVISYLRSLGILSVIYLDDLLLLGNTYAECLKNVNTSVELLERLG
FT                 FIINEEKSCKIPSQSCKFLGFVLNSQKMTLELPPEKRYKIRDRIREFKIMK
FT                 KCKIRDLAQLIGLLVSACPAIKYSWTHIKNFEREEYLALLKTDGNYDTVIQ
FT                 LNQELQEDFSWWESNVLHRVSNIATQKFNLVIFSDASLTGWGISCENIKTH
FT                 GHWNEAEKLHHINYLELLSAFFGLKCFAKELKNCSILLRIDNTTAISYINR
FT                 MGGIRFKKLSDLAKAIWKWCEEREIFVFASYISSKENVEADLESRRLNNET
FT                 EFELSNAAFRKITNTFGYPDIDLFATRINAKCKNYVSWTRDPDAMAVDAFT
FT                 ISWNKFFFYAFPPFVLIIKVLQKIKSERARGIIVVPDWPTQPWYPLFASML
FT                 KTEPLIIKLNNKTLLSPDRKPHPLWKSLTLVAGKLSGELSWQRAFRRNP"
FT   CDS           3745..4746
FT                 /product="DIRS-1_MoPha_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="QEATSSVEISYPGGREIIRRAFMAKGIPEKSITISIA
FT                 SLSDSSLKQYDYALKKWWLYCKEKNLPIYDAKIVDVVKYLTEEYDKGASYG
FT                 SLNSMRSAISLIIDPEVGQNEIIKRFFKGISKLRPPEPKYESTWDPGIVLD
FT                 YFGDLRNEDLTLDLLSKKLITLLALVTGHRIQTLSLIDIRNIIVKVSLIEI
FT                 KIPERIKTSKPGRSQPVLILPFFKKNPNICPAKTLQCYLKRTENLRKNITV
FT                 LFISFKKPFKKASTQTLSRWVKDVLRESGIDTDIFSAHSTRHASTSAAKRK
FT                 GINIDVIRKSAGWTENSSTFTKFYDRPLVQDVRMFGRAILDR"
XX
SQ   Sequence 5269 BP; 1903 A; 962 C; 995 G; 1409 T; 0 other;
     attgtatttc gcgcctcttc ctcaagatat aacacgtagt actctccgct ctatgccgag        60
     gtcgccacaa tttttatagt tagaaaccaa aaattctccc ctcctcctag gggattcccg       120
     ccagcgctcg tgtcattctt tatctttgtg ccgagatagt cacatcgcca gtgcattttc       180
     aaggaaaaaa taaggaaaaa atgggaaaaa ggaagcacaa gagctcacgt tcagacgatg       240
     aatccaagga aaataaagta aacaaaaaaa tgaggcgttt atcgaaggaa ttaaggaaat       300
     taaaaaacat aatacagaaa ggtacaagta agtatcacat caagaggatc ttttcctctt       360
     tctcatcaac acatatcgct tgatacacct ctgtagcgtc ataggctcta acctacgacg       420
     aaccacaggc tctaacctgg tggtgagctt gagctcaaga tgagaggtac aacataacct       480
     aacttgttgg cgtaaatagc ccatcagaca agcgaactat cgcttatgaa atgacatcct       540
     tgagacacat tttacgcgta tatatatata tatatatata tatatatata catagggtac       600
     acggtcgtca cgtcataggc tctaacctat tgacgagcca caggctctaa cctgttggcg       660
     agcttgagct caaagacgaa aaggcaaaac gaggccttca gtgtataccg caaaaccagt       720
     cagttttact gattccggcg tgaatgtgat ttcctgtcct taatcgtaga ttaagaaata       780
     aagttttttc aggaaacaat gagtcaaagg cagagaaccg gggtcaacaa gaatcaacta       840
     aaaaagcaga cttgaggagt ttatcgagaa gcccctcatg tactcctcca aattctctgt       900
     tagaattttc ggaggattat caacactcgc ctttgacaaa tgacgagatc atggttaacc       960
     caacgaaagt taattcagcg gttgtaatgc aaaaccatga tcccaacggt gttgctacaa      1020
     cgcaatcaaa catctctaat gaaggtcaac tgacacctaa ggccggagaa aattcagctc      1080
     ctccaaataa ccaggaagct gacgtttcca cacagggaaa cgaggtcgtc atcgaagacc      1140
     tggacataga aattctagaa gctatcggca aacgagtagc ggaagataga gtgctagctc      1200
     cttcaattcc aaaaagcatc gccgttcgat tggaggacat tttaaaaaaa ggtcttccaa      1260
     aagaagaaaa ggaaaaatta ataaaggaac acgcaccacc aaaaaattgc acattgatag      1320
     atcctcccaa attaaatgac gaaattaaag tttctgtaat ggaaacaacc acgaaaaggg      1380
     atgatcgcat aatagaaaag caaaaaaaaa ttacagcttg tcttgcccta atgggaagtg      1440
     ccatagtgga tatcattaac agtaataaaa cagagagaga aaatccaaaa ttacccccca      1500
     ctcaaattga attaattaag aagatcagcg aggctactcg attattagca gatctgcaga      1560
     gagatgagac cctgactcgc aggagcctaa tccttgctgt cattaatagc tctcagaagg      1620
     aagtcttaca atcatcaacg gcggatgaat ggctctttgg ccagaagttg ggcgatcgtt      1680
     taaaggcggc aaaatcaatt gaacgatcga gtaaggatct gaaggcgaac cctaaaaaca      1740
     ctaagaaaac aaaaaacttc aaggccccgc ctcgacgtca acccttcaaa cccaagacgt      1800
     caggcgggta tcgaaacaaa agttacaatc gaaaccatcc caacaagaaa aattggggag      1860
     gtcagaacga ggaaaatcgc agcagtccca aatcacaaac tccagcacaa cagaagaaat      1920
     cacaaaatta agtgacgtaa gtagaccggc gggtagatta aaattttacc tagaagaatg      1980
     gaaagcttta actaccgatt ccagaattct ggagtggata gagggatata aaattccttt      2040
     tgctcgttca gtatttcaaa atacaaatcc aaaagagccc atgtggtcct taacagagaa      2100
     aaacacaatt agagaacaca ttgagcaatt aatttcaaaa gaagtagtaa gtaaaagcca      2160
     ttcacaaaaa aatcaattcc tatctagtat ttttttgatt ccaaaaccgg atggctcaag      2220
     tagattaatt cttaacttga aaaaattaaa taaatttatt gacacggatc actttaaaat      2280
     ggagggttat aagatagcga gtaaattagt aagtcacaac tgttatatgt gtagattaga      2340
     tctcaaagag gcttattaca cgatccccat tgacaaaggt tatagaaaat acttgagttt      2400
     tttatttgaa gacaaacttt atgaatttaa ttgcttaccg tttggcctta atacggctcc      2460
     atatgtgttc acaaaaatca tgaaaccggt gataagctat ctaagaagtt tgggaatttt      2520
     atcggtaatt tatcttgatg atttacttct attaggaaac acatacgcag aatgcttaaa      2580
     gaacgtaaac acatctgtgg aactgttaga aaggttaggt tttatcatta atgaggaaaa      2640
     aagctgtaag attccctctc agagctgtaa attccttggc tttgtattaa attcacaaaa      2700
     aatgacatta gaattgccac cagaaaaaag atataagatt cgagatcgaa ttagagaatt      2760
     caaaataatg aaaaaatgta aaattagaga tttagcacag ttaatagggt tattagtatc      2820
     agcttgtcca gccattaaat atagttggac acatatcaaa aactttgaaa gggaagaata      2880
     tttagccctg ctaaagaccg atggcaatta tgatacagtt atacaattaa atcaggaatt      2940
     acaagaagat ttttcgtggt gggaatcaaa tgtcttacat agagtttcaa atattgctac      3000
     tcaaaaattt aatctggtca ttttttcaga tgcttccctg acaggttggg gaatttcatg      3060
     tgagaatatt aaaacacatg gacattggaa tgaagccgaa aagctgcatc atataaacta      3120
     tttagaactt ttatcagctt tcttcggact taaatgtttt gccaaagaac ttaaaaattg      3180
     cagtatctta ttaagaattg ataacaccac tgcgatttca tatataaatc gaatgggcgg      3240
     tattagattc aaaaaactta gtgatctcgc aaaagctata tggaagtggt gtgaagaacg      3300
     cgaaatattt gtcttcgcat cctacatttc ttcgaaagaa aatgtggaag ctgatttaga      3360
     atctagaaga ttgaataacg aaacggagtt tgagttatca aatgcagctt ttcggaaaat      3420
     tactaataca tttggttatc ccgatataga cttgtttgca acaagaatta acgcgaaatg      3480
     caaaaattat gtctcatgga caagagatcc ggatgctatg gcagtcgacg cttttactat      3540
     aagctggaac aaattttttt tttacgcatt tccaccattt gtgttaatta ttaaagtttt      3600
     acaaaagata aaatctgaaa gagcaagagg gataattgta gtgccagatt ggccaacaca      3660
     accatggtac cccttgttcg cctcaatgct aaaaacggaa ccgttaataa ttaaactcaa      3720
     taataaaact ttactttcac ctgacaggaa gccacatcct ctgtggaaat ctcttaccct      3780
     ggtggccggg aaattatcag gagagctttc atggcaaagg gcattccgga gaaatccata      3840
     acgatttcta tagcttcctt aagcgactct tccttaaaac agtatgatta cgcattaaaa      3900
     aaatggtggt tatattgtaa ggaaaaaaat ttgcccattt atgacgcaaa aatagtagat      3960
     gtagtaaaat acttaaccga agaatatgat aagggagcgt cttacggttc tctaaatagc      4020
     atgcgatcgg ccatttcact gattatagac ccggaggtag gacagaatga aattattaaa      4080
     agattcttta aaggaatatc aaagttaaga cccccggaac caaaatatga atccacatgg      4140
     gatccaggaa tagtccttga ttattttgga gacttacgaa atgaggactt aaccctagat      4200
     ttgttaagta aaaaattaat aacattgcta gcactagtaa caggtcatag aatccagacc      4260
     ttatctttaa tagatataag aaacataatt gttaaagtta gcttaataga aattaaaatt      4320
     ccggagagaa ttaaaacttc taaacccggg agaagtcagc ctgtactaat tttaccgttt      4380
     tttaagaaaa atccgaacat ttgtccagca aaaactcttc aatgttatct caaaaggacc      4440
     gaaaatctta gaaaaaacat aacagtccta tttatttcgt tcaaaaagcc tttcaaaaaa      4500
     gcatcgacgc aaacacttag tagatgggta aaagatgttt tacgtgaaag cggtatagat      4560
     acagatattt tttcagcgca tagtacaaga cacgcttcta cctctgccgc gaagcgcaaa      4620
     ggtattaata tcgatgtaat aaggaaatca gcaggttgga ccgaaaactc atctacgttt      4680
     actaaatttt acgatagacc cttagttcaa gacgtaagaa tgtttggtcg tgcgatatta      4740
     gacagataaa ggaaaacgga gtcattactt tatactgtca acatttgagt tacaaaaacg      4800
     attagagtaa ttagatcgtt aaagcgttgt tttttccttt atattcattc aaagaaaaat      4860
     aaaaattata gtattatagc cgtagtcaca cctttaaaca tctacgtgtt atatcttgag      4920
     gaagaggcgc gaaatacaat taagtgatta aacgaactta cctgtaagtg aagttctatc      4980
     ataattgtat gtagcgcctc ttccgaaaga taagtcccac cctgtaccca catccgatag      5040
     catctcggat tccacatatc atactagact acggcggaac tttcaaagaa tgacacgagc      5100
     gctggcggga atcccctagg aggaggggag aatttttggt ttctaactat aaaaattgtg      5160
     gcgacctcgg catagagcgg agagtactac gtgttatatc tttcggaaga ggcgctacat      5220
     acaattatga tagaacttca cttacaggta agttcgttta atcacttaa                  5269
//
ID   DIRS-1_MSe  repbase;    DNA;    INV; 4965 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4965
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 547-547 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 161-bp subTIRs.
XX
SQ   Sequence 4965 BP; 1568 A; 1001 C; 997 G; 1399 T; 0 other;
     attatgtgcc ttcataaaac acacagcgtt gatgtgaaga agctgtctat ggttatgctt        60
     tgtctatagt tatatacctg tataatctgt ggattctgtt tacttacacc ttcttctcac       120
     cagaggcgcc actgtcgtga cgcttgtggc gagttgacag ttatttgaat catagcgttt       180
     gtggttttgc tgtgttttgc cgcgaagttt cagtgataaa gtaattgcaa acaactttat       240
     gtgcaaaatt agtgcatcaa gtccaaatta ttcatcattt acttcggtaa gtctttagca       300
     tattttaaga tgagtgataa tcgtgtttat gaccaagata agcctgattt tgttgctccg       360
     gagggagaac aaaacagggc tacgggctcg cgtgaagatt tacacagttc atcttcttcc       420
     tcatcttcgg aagatgagga gggtttcgct agcccaccgc cgaataagcg atcaaaacac       480
     gatcaccgac atagctcatc taccgtcaat gatccacgaa tagacgcatt aatgactcag       540
     gtagcttgta tatcagatta tcttacgaat ttaccgtacc atttacatac tgcaaaccaa       600
     ccttcggata atttaatagg aactccatca acatcacaaa caccttttta aataatccta       660
     ctcagacgga cgttagtttg ggtgaaattc acgttgattt tgatagtaag atggttattc       720
     ctgtagccga taaagatcgt ctcaggaatc tagaacagtt gcaaatgttt gattcaccgg       780
     cttggaaatc gatccgttat aaaaaggcat tacaaacgtg tgttgctagc ccagggttta       840
     cagcattaaa agttaatgag gaactctgtc atttcaacaa tcagaaagat tatttgcagt       900
     ccacagaaca ggtgttagca ggcttgtcaa attctgtctt ggagcaacgg cagctattac       960
     aaacaggtct tcagagtctg gtaaattggg ctgccgctaa ccctgaaaat ataaattcta      1020
     ataccttggt agaaaaacta acgggtcttt tggacctaac tcagagagta ataagaagtg      1080
     ggagactata atgcaggtta tttgtggtaa gcggggagaa tgtatacaga ctaggcgtga      1140
     tagaatttta aaagagatag ccaatcccaa tttaaaagcc acattacaga gaatcccgcc      1200
     aagctctgag tatttatttg gacgtgagaa attgttgcca gtcatacagt ctttgggtgg      1260
     tacacaggtt tggttaaata ctccaagcta cataaaagag gacaaaccat caacatcttc      1320
     ttattctaac cgtgttacac ataataagga tgttaggaag aacaaatatc atgataataa      1380
     gttccaccgc actccaaaga ataagccaga ttttaagaag aatcagccct ttcgtcacag      1440
     taaaaaaggc tcagaataca agcacaatcc aaagacatca caaaagtgac tatcacttcg      1500
     aagggggttg tttaagaaat catttaaaag tttggaagga attgggcgca ggcccattta      1560
     ttcaaaagat tataacctat ggccgtatac ctttcaaacg aaaaccccct tgcagtatcc      1620
     atacagccat atacaaagag ctttaacaac caagacaacg gaccaaatgt cagaggtcat      1680
     aatcaaatta aaatcccaga atattctaga gaaaccattg gtaataaatt ctggtttctt      1740
     ttcaaaaatg tttttgattc agaagccaga tgggggggta cgtcctattt tcgacctccg      1800
     gaacctcaac agttatgttg ctacaaaaag attccaatta atttctcagg tggacgttat      1860
     ggatttcctt caaagtcagg attggttaac gaagatagac cttcagcagg cttattttca      1920
     tctacccata gcggaaacac acaggcgttt tctgcgcgtc atatacaagc aagaaatctt      1980
     gcaattaaca gccttacctt tcggtctatc ctctgctcct caaatttttg cagccctatc      2040
     aaattggatt gcggaaatcc ttcgggctcg aggaatcagg attatagtat atttagacga      2100
     ttaccttttg gcccaccaga attgtctcag ccttaccaaa caggttacgg aaaccgtgac      2160
     tctcttagag tctctaggat ggcatataaa ttaccaaaaa tcaacactaa tccctaccca      2220
     gcagttagag tatctgggtc tcaggtggga tactcaagtc cagacagtaa acttaccctt      2280
     caaaaaagtt cagtcaatac aaacgagcat tcggggcatt ttagaggtag agagttgtac      2340
     cttaagacag gctcagagct tgctagggca actaaatttt gccaaccata cagtacccaa      2400
     gggccgttta cattgccgcc aattccaggt ttttctcaga cagttcaaac agaccagacc      2460
     tcgggagaga aggctactaa ccccctgtgt gatacaagac ctaaattggt ggctgaaaga      2520
     gatagagcac agtacggtct ctcttcaaag aaaggaaatt actcatttcc tcaccacaga      2580
     tgcatcggat gcaggctggg gtgcccaact aaatggggtg ttcttggcca agaggtggac      2640
     atcacgccag cggaactggc attccaacgt aaaggaattg tacgcagttt ttgcggccat      2700
     agagagtcgg caggtaaatt tgtcaaatgc gcatatccta gtgcagtcag acaatcgtac      2760
     actagtggcg tatataaaaa atcaaggtgg cactcgctca atagcactgc taaatctcac      2820
     cagcaggctt ctggagctaa ccgagcagct caacataacg ctgtcggcat gttacctccc      2880
     ggggaggcta aacggcattg cagaccgcct gtcgaggggt cggccagtac ccgagtggca      2940
     cttgttaccc caggccacgg aagccatatt cagacaatgg ggagttccgg atatagacct      3000
     gttcgcatcc gaaagcaccg ccgtcgttac cagttacgtc acgctggatt cacaagatgg      3060
     atcagcagta tactgcgacg cattcagtcg cgagtgggac tacaatcttg cttgggtgtt      3120
     tccaccaccc aatctaattc ccagagttct atcgcacctc aataccgcga agggtcttta      3180
     catagtgata gcaccccagt ggacccaatg ttactggtta ccagacctac aaactcgagc      3240
     aatagaggat ccaataacca tattgcacct gcagagggta ctcatagatc agaccaccag      3300
     gcaaccacct acccaggtgg acaagataca tctccaggct tggaaggttg ggggtggtcg      3360
     gaacacatct cgcattggag tgtagatgaa caaaaattat taaatagcag ctggcgttct      3420
     tcaactctgg aaacatataa ggctccgatt aagcgctggc aatcctggtg taaatcaaat      3480
     gacactaatg ataaatctcc aaagggtgaa gatattgctc gatttttagc aaaccttttt      3540
     cttaaagaaa acctagcatt taatacaatt cttctacaca agtcagccat atttactcat      3600
     tgtagaccgt ggaaagaaaa ttataataaa aactttttat tcagcaaata ttaaaagcca      3660
     tatcgctggc taggatacca actaaaaaga cgcctatctg ggatactaaa atattatttg      3720
     actggctgtt agctactccg cattgtgaga cactttttga catatcaagg cgtacagctt      3780
     taatattgct tctggcatct ggtcgcagaa tacatgacct aaccttgcta gaggtgactg      3840
     aggaaagtct tgttattgaa aatgacaaga ttattttgtg gcctaaattt ggttcaaaaa      3900
     ctgacacagg aacacatcaa caatcaggtt ggcttttgtt aaagaaccag aatgttaata      3960
     tttgcccagt ccgacatgtc atgaaactct taaaaatttc caagaaccgt cgagccagtg      4020
     gtggtaatat aataagcctt tttatttcca ttatgggagt cattaaacca gcttctagga      4080
     caattatagc tggatggatc aggtccattt tcagggaagt taaaatagat gcacccctgg      4140
     cagcattcga tcagcagtag catcaaagag ttgggtagaa gatagacctg tacaagaaat      4200
     attagacaga ggtaattgga ggagtatgtc aacattcacc aatcattatt gccgcagagt      4260
     acaaagacgg aatgatcatt ctgaagattt gttgcagaga acattctcag ttatataaac      4320
     aatagttatt attttattat tattgttatt tttgttttgt tttgtttgat tattttacct      4380
     tataataagg aattgttatt ttattattat ccttttgttt tgtttgatta ttttacttta      4440
     taatgagaat agaatttata actgtgatca aaatgataga attatatgat tttcattttt      4500
     atattttcta cttaaataaa aatatatata tatatatata tatatatata tataattgtg      4560
     gtaaatataa taatcacata gcgtttgggt atttaatttc tcccttctca ccagcagata      4620
     acaaacaggt cttcacatca acgctgtgtg ttttatgaag gcacataata gcactgtttt      4680
     gcattccaac aaaacagata ttatgtgtag aataaaacac acagcgttgc agcaaggctc      4740
     ttgcaggtga gtgaagacac gtatgattca aataactgtc aactcgccac aagcgtcacg      4800
     acagtggcgc ctctggtgag aagaaggtgt aagtaaacag aatccacaga ttatacaggt      4860
     atataactat agacaaagca taaccataga cagcttcttc acatcaacgc tgtgtgtttt      4920
     attctacaca taatatctgt tttgttggaa tgcaaaacag tgcta                      4965
//
ID   DIRS-1_NVi  repbase;    DNA;    INV; 4849 BP.
XX
AC   AAZX01002308.1;
XX
DT   10-JAN-2012 (Rel. 17.02, Created)
DT   10-JAN-2012 (Rel. 17.02, Last updated, Version 1)
XX
DE   A family of DIRS-type LTR retrotransposons.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4849
RA   Piednoel M., Goncalves I.R., Higuet D. and Bonnivard E.;
RT   "Eukaryote DIRS1-like retrotransposons: an overview.";
RL   BMC Genomics 12(1), 621-621 (2011).
XX
DR   EMBL/GenBank/DDBJ; AAZX01002308.1; Positions    1257    6105.
XX
SQ   Sequence 4849 BP; 1641 A; 911 C; 953 G; 1344 T; 0 other;
     taattctact tcgtcctcgc tcgagtacat taatatgtag tatcctcttg gtccgcttgg        60
     tggcgcacgt attcagagtc aaaaaagcaa gacggtcccc tctacccgcc tcgcgcgctt       120
     tcttcacttt ttttcttcgt gcgcgcacgg aggtacacgt gttcgagtct gcgaccgttt       180
     ggaaaagttt ttcatcacaa aatgggaaaa accaaaaagc gaggtcatga ccacgaggag       240
     gacgatctcg aggagctcaa gaagaaggta gctaggtaca acagacggat tgaacgagcc       300
     ctagaaaagg aaaaggacaa acgagcgaag gaagatgcaa aagatgacaa ggaaaatggc       360
     gatcctggga cttcaccacc ccccggcgac atcgtgcccg acgatattgt gccagacgat       420
     attgtgccag acgaggaaga ccaaggaaag gaagagagga acgactggct taatttcgta       480
     agttttgtat gaattctaac gttccgtggg aaggcgctgc gtcagcgctg cgtgtcgttc       540
     gcgccaagaa ggccgattcc gagaaacaga ggcagcgcgg tcgcgacaaa caagacgatg       600
     cgtacacgct tgtattacag ggcaaagccc aaacatttct tgaactcgtc tatgctcgtt       660
     tcttgtgacg tgataatgac gtagtgatcc atctgtgctc gttctatggc gagacaaaga       720
     tgtcaagtcc tttctgtgct ctcttatgtg gtgagacaaa gaaatggaga ctcgactgtg       780
     cttactcgcg tgataagaca gttcaaaacg atcaaattgt gtgtggctta ataacagaaa       840
     gttacctaat ctcaaattat tcgattgctc gaaaaacttt cttggttaac agttgggcaa       900
     ggatccttca gaaagtcagg ccttaaaact ggaagtcgac gcagacttat taaagagatg       960
     gacttttttc tgcaaggagg gaatgaaaaa agaggacatc gatcggatca tggagaatta      1020
     tgcctgtgta gctgagttag acggcccaaa actaaaccca caaattatgg catcaatgaa      1080
     agaatacgcc cttaccagag ataatcacat gagtgaggtg caaaagatgg ctggtacagc      1140
     cttatctatt attggatcag ttattacaag tttttacaaa gatagtgaga gcgatttaga      1200
     atttaatctt gagacccttc tcacactttt atacgattca ggaaagattt tgtcggccat      1260
     agtccacaaa caaaacatta caagaaaagc atttatcgag ccaggactct ctaaggaaac      1320
     caaagccgtc ttaaaagact caaaaacaga tgagtttctg tatgggaaag acttgcctga      1380
     aaaaatcaaa gaggctaagg ccttgaataa agtaggcgac gagttaaagc tctctcagcc      1440
     taataaactg ggcacctcaa cgaacaagtc gtcaaactac agggccccat ttgtgagacg      1500
     tccaccagca ggacagatgg ggtctacagc tttcacagga cgtctgaaac aaaggccatt      1560
     tttcagaaac aagcaacaat ttgtaaatca cagagcacag tggcattcac agtcgagacc      1620
     attcaacaat caaggaaaga aaaattagat accgtaagtg ttccggcagg caggttaaag      1680
     ttgttcctcg ataattggcg taagatcact gatgataaat tcatctttag ttgtatttcc      1740
     ggttataaaa ttcctgtgat ggaaggcgtt tctaaattaa aatcttatag ttatgaccaa      1800
     tctggtcaga aggaaacgga gactgtgcaa gagtgcgtag atgccttgat aaagaaagga      1860
     gcgattaaag aatgttcaga tcataaagac caaattttat ctccttactt tctagttaaa      1920
     aaacctgatg gttcccatag atttattcta aatcttaaaa attttaacaa aattgttatc      1980
     aatcaccatt ttaaaatcga agatattaaa acagtcgtgc aacttacgtt tccaaactat      2040
     tttctagcct caattgacat agaagacgcc ttttatctta tacctataca tgtggaaagt      2100
     agaaaatttc ttagatttaa agtcaaggaa aaaatttatg aatttgtttg tttgccattt      2160
     ggcctatgca cagcccctct tatttttact aaaataatga aagtcgtagc gaagtatgta      2220
     agaagtttag gatttacatc agtgatctac ctagatgata ttttatgtat agaaagctct      2280
     gtaaacaaat gtaaaaagaa cattaacgaa acaataagcg tattagaatg gttaggtttt      2340
     cgtataaatt ataagaaatc aaacctcaca ccatctacat cttgccaatt tttaggtttt      2400
     attatcgata cacaaaaata tgcaattttg ttgccaaacg aaaaaagaaa agcgatctat      2460
     aaactcttag tcgaattcct agatcttaag cgttgtagca taagaaaata tgctcaactg      2520
     atcggaaaac tcatatcggc ctgtcctgcc attgaatacg gatggatgta cactaaaata      2580
     cttgaaaaag aaaagatttt tcaacttatt attaacgata aatgctatga taaaatgatg      2640
     aatatatctg acagagtgaa acaagaatta ttttggtgga aagaaaatat attagaaaag      2700
     atttatcata taaaagacgg ttcctttgct atgaccatat tcactgacgc atctacaaca      2760
     ggctggggtg cctggaatta ttctaagaaa atctatggtt tttggtctcc agatgaacaa      2820
     aaatggcata tcaactattt agaattatat acgataaaat tagccttaga atcgttagct      2880
     tcggacgtca aaaattctca gattttatta cgcgttgaca acacaacagc cttatcctac      2940
     gttaacaaga tgggtggagt gaggtttgac aaatataaca aattagcgcg agaaatttgg      3000
     aaatgggccc agttccgagg taatattttg atagcttctt acattccgac aaagcaaaac      3060
     gtaatagcag atagtttatc tagaattaag aacattgaca ttgaatggga gttgaacgac      3120
     atgtacttca gaaaagttgt tgatcatttt ggccaaccgg atatcgatct gttcgcatcg      3180
     aaagaaaaca acaaatgtaa agttttcgtt tcctggaaac ctcattctga aacttcctat      3240
     attgacgcct tcacaattgt atggacaaat ctctattttt atgcatttcc ccccttctcg      3300
     ctcattttac gtactcttgc aaaaattaaa cacgataagg cagaaggtat cattatatta      3360
     cctctttgga aaagtcaacc ttggtttccc ttgcttgaaa atttgattct aggaaaaccg      3420
     cttattttca acgctaatcc aaatttatta ttatccccgt gtagatcgca gatacatcct      3480
     caagcagatc acctgcattt aattgcgtgc agagtatccg gcagcttttc gcgaagagag      3540
     atatcccaat agatgcccta gatattgtca tgtcttcgct aagcgagtcg actataaaac      3600
     agtatggtag tgccttgaaa ctatggcata aattttgcca taaaaagaat atcgaatttt      3660
     ataatacaga accaaagttc gttttaagtt tcttgactga taggtttaat gcgggagctt      3720
     cctacggaac cttgaattct tgtagaagcg caatatcttt aattgctaaa gacaaggtcg      3780
     gggaacatac gagtatcact cgatttatga aaggagtttt taaactccgg ccgtcaaaac      3840
     ctaagtatga tacaacatgg gatatctcta tagtattaga ttatttagaa aacctagatg      3900
     tttctaattt agaaaatctc acctataaga ctatagtttt actagcatta agcacagctc      3960
     aaagagcaca gacgctctgt aagataaaaa ttagtaatat aaagattttt gaaaacaaat      4020
     tagaaataat aatcccagag attttaaaaa cgtcgggacc ggggcgttac cagccttgtt      4080
     taaagttacc aattttttct aataaaccta agctttgcgt tgcgtccact attaagctat      4140
     atattgaaaa gaccgcatct ttaaggagaa atcataatca gctttttata gccataaaga      4200
     aacctcataa tgagattact acccagacta tcagcagatg gattaaaaag tgcctaaaaa      4260
     atagtggtat agacacttcg gtatttacgg ctcactcgac gcgtcatgcg tctacctctg      4320
     cggccctttt aaaagggatc gatttagaca cgattcgaag aaccgcaggt tggtcaaatc      4380
     aatccaaagt atttgcgaac ttttataatc gcccaattgt tacaaataca tgtgaatttg      4440
     cacgatctgt attacaagaa caataaaaag ttttgaaatt atatactcta aaaaactaca      4500
     tattaatgta ggagagcgag gacgaagtag aattagtcga tcaaacgaac ttacctaagt      4560
     gaagttcgat cgtaattcta cgatgtcctc gctcgagtat attaatccct ccctttaaaa      4620
     ataacaagtt atttctccca cccaaaaaaa aaaaaaaaaa aaaatcccgt cagctctaag      4680
     ctctaaaagt gaagaaagcg cgcgaggcgg gtagagggga ccgtcttgct tttttgactc      4740
     tgaatacgtg cgccaccaag cggaccaaga ggtactacat attaatgtac tcgagcgagg      4800
     acatcgtaga attacgatcg aacttaggta agttcgtttg atcgactaa                  4849
//
ID   DIRS-1_PBa  repbase;    DNA;    INV; 4989 BP.
XX
AC   .
XX
DT   10-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4989
RA   Bao W. and Jurka J.;
RT   "DIRS retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 503-503 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~150bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(643..1023,969..1604)
FT                 /product="DIRS-1_PBa_1p"
FT                 /translation="SLFSEILPNVDEISHSLEIPIEADESLTQVGDRDRTP
FT                 NFSENGNVTFSNPVVTEVVEDSSTNEKASDTLLKELFGERTDSPVATTWPP
FT                 IILDTIKSDVRLGLREELKNSLLAKYEPKEELFFSLPLRPPRQIRAQRGTF
FT                 FLAPPKMNKEILPNLGATVITRDKYQSQSQGEVGASLNAIVSGFSELSKLE
FT                 SLQTSLEGKSAISKIAEGIRLLSDHHFGLSKTRRALIVPSLNVLGKCASDS
FT                 AAIDEYLFGNNFAEEINAAQAIERTAHKTARKIQQPVQRAQRPAVQHFKQQ
FT                 RNQPSRINQSIPKNIKAPLHKDSSTHQPRRGSIQSSRGRRPRSRSRR"
FT   CDS           join(1893..3518,3428..3982,3921..4430)
FT                 /product="DIRS-1_PBa_2p"
FT                 /translation="MRFILNLRRLNSYISPPHFKLEDWRTVIRLMLPNYKM
FT                 ATIDLEDAYLLMPIHPSHRKFLRFQWGGQVYEFRALPFGLAIAPFIFTKIM
FT                 RPVVKSLRERGFHSVVYLDDFLLLGASDEECQENIYASQKLLLSLGFLINY
FT                 SKSQLTPSSKCKYLGFIFDSVQQSVAIPPEKRRRLFSLIRDFSQRTHCSVK
FT                 DFASMIGSLVSVFPAIQYSPLYTKRFEREKFLALKAFSMDYSRQMTIPSYL
FT                 REDFNWWLNVLSDVEQSNVIRSAPFVREIFSDASLTGWGASCDGRRTHGWW
FT                 LPEDRFLHINALELKAVLYALKCFAADLHSCNILLRVDNTTAISYVNKFGS
FT                 VQYPLLSDIARDIWRWCEERNIYLMASYIASMDNVIADSESRIVNTDTEWS
FT                 LSAQAFNLIERSFGPFDIDLFASLINAKTVTYVSWAPDPGAWAIDAFTLSW
FT                 HSFYFYAFPPFILIPRVLRKIIDDEATGILVIPWWPSQPWFPMFHHLLIAD
FT                 PIFCAPSHSLLSSPFRPQHPEWKNLSLAAGKLSGRHSDLRQSHHQLTSTSG
FT                 VEEPFPGSREIIRKAFRSQAVPSSALDIILASLSTATFKQYARPLRSWWSF
FT                 CQKYRISPFSPEVNQVLEFLTQELKKVGSYSSFNTIRSAVSLISDNAIGNH
FT                 PLIKRFGRGVSVMKPQKPRYDFIWDPAPVIAKLAKIFPYDSLTLDTISRKL
FT                 VLLLALASGQRAQTLAAIRVPYIFSNKPQDSAHKLSRLLESHISFLTNNKL
FT                 IIRIPDRIKTSAPGRIQPLLTFPRFSDRPELCIATILEYYLQRTKELRPPD
FT                 CEALFISCVKPYKAVGVQTVSRWIRRGLEECGVQSDLFSAHSTRHASTSLA
FT                 AARGVSLDLIKRAAGWSGESRTFANFYNRPIINADDFCNSILSS"
XX
SQ   Sequence 4989 BP; 1289 A; 1188 C; 1047 G; 1465 T; 0 other;
     ttatgccacg tctcgtccgg atggacaact atgtagttac gtctccgcgc ctgcgttgtc        60
     aacagaattc acagaatcgt aaaagtagaa aagggggcgc tccggcatcc aggccccaag       120
     tccgccatct tgtctcttca ttatgttttt ctgttcctgc acggacggca gagttcacat       180
     acagttttat aattttcata gttttgtgag tttgcttttt aggaaatatg cccagaagaa       240
     gaagagatcg ctcatcgagc tcttcgggac gaagaaaagt atcacgaggt cataagcacc       300
     gtgatagttc gcgtgagaga tctcgacata acccctctag aagatcgagg gaatcttcgt       360
     catgtaagaa attgatgcgt gctctatccg agtttatggc attcataaag gaccgggagg       420
     cggaattggt gaggcccgag aggccatcgc atccgcgttt agatgacacc tcatcttttt       480
     cggatgcacc cgttgcttta tcggtagatt cacatacaga tggacagacg gtccgaggaa       540
     cggaccgggg ctgcgtacca ggtgtgtccc cttgttgacc cgttattttt gaagaatcgg       600
     caaagagggg acgcaaccga ctgttcctat ctgttatgct aatccctttt ttcagaaatc       660
     ttgccgaatg tcgacgagat ctcgcactca ttggagatac ctattgaggc agacgaatcg       720
     ctcactcagg taggagaccg ggaccgcacg cctaattttt cggaaaatgg caacgtcacc       780
     ttttctaacc cggtggtcac ggaggtggtc gaggattcaa gtaccaacga gaaagcatcg       840
     gatactcttc tcaaggaatt atttggcgag cgaactgatt ctccggttgc taccacttgg       900
     ccgcctatta ttttggatac gatcaaatct gatgtccggt tgggtcttag agaggaacta       960
     aaaaatagcc tcctcgccaa atacgagccc aaagaggaac tttttttctc gctcccccta      1020
     agatgaataa agaaattctt ccaaatctcg gagccacggt catcacacgc gataaatatc      1080
     aatcgcaatc tcaaggggaa gtaggagcgt ccttaaacgc aattgtttct ggcttctcgg      1140
     agctctctaa gctagaatcc ctccaaactt ctttggaggg caaatccgct atctccaaga      1200
     ttgctgaagg catccgcctg ttatcggatc atcattttgg cctatctaaa actagacgtg      1260
     cactcatcgt tccttcgcta aatgttctcg gcaagtgtgc atccgactca gccgccattg      1320
     acgaatacct tttcggaaat aactttgccg aagaaataaa tgccgcacaa gcaatcgaaa      1380
     gaacagcaca caagacggct agaaagatcc agcagccagt tcagagggct caacgtcctg      1440
     cagttcaaca ctttaagcag cagaggaatc agccgtcccg tatcaaccaa tcgatcccaa      1500
     aaaacatcaa ggcccctctt cacaaggact cgtcgactca tcagccgagg aggggctcta      1560
     tccagtcgag tcgcggcagg aggccgaggt ccagatcccg ccgttaaatt cagtaagacc      1620
     agcaggtcgt ttggcctctt ttatagatca ttggagagaa attacttcag atcctattgt      1680
     attggaagct gtgacgggtt ataagatccc cttttttact ccgcctccac ctcacctttt      1740
     ggtcaaggaa ccatcgtttt ccgcaactca ggcagaattg tgtaattctg aaattaaacg      1800
     tttactccta aagggcgcct tggagaaagt tcacccgtca gacgaccaat ttctttctcc      1860
     atttttttct catcaagaaa tcttcgggcg gaatgcgatt cattttaaat ttgcggaggc      1920
     tgaattcgta catctctcct ccacatttta agttggaaga ctggcgcaca gtaatccgcc      1980
     tcatgcttcc taattataag atggctacta tagacctcga ggatgcctat ctactgatgc      2040
     ctatccatcc gtcacatagg aaatttcttc gttttcagtg gggaggtcag gtgtatgagt      2100
     tcagggccct accgtttggc cttgctatcg cccccttcat ctttactaag attatgcgtc      2160
     ccgtagtcaa atcattgcga gaaagaggct ttcactcagt agtttacctt gatgattttc      2220
     tacttttagg cgcttcagac gaggaatgcc aggaaaacat ttacgcatca caaaagttac      2280
     ttttatccct aggttttctc atcaactatt caaaatctca acttacgcct tcttcaaaat      2340
     gtaaatattt aggttttatt tttgactcgg ttcagcaatc tgtggccatt ccacctgaga      2400
     aaagacgaag attgttttca ttaatacgag atttttctca gagaacacac tgctctgtaa      2460
     aggactttgc gagtatgatc ggctcgcttg tttcagtctt tccagcaata caatatagcc      2520
     ctttatatac caagagattt gaaagagaga aatttttggc tcttaaagcc ttctctatgg      2580
     attattccag gcaaatgaca attccctctt atttgagaga agattttaat tggtggctca      2640
     acgtgctctc ggatgtcgag caatccaacg ttattcggtc tgcccccttt gttcgtgaga      2700
     ttttctcaga tgcgtcacta acaggctggg gagcctcctg cgacggtcga cggactcatg      2760
     gctggtggtt acctgaggat agatttcttc acattaacgc tctagaattg aaggctgttc      2820
     tgtacgcctt aaagtgtttt gcagctgatc ttcatagctg taatattctg cttcgagtcg      2880
     acaacaccac tgccatttct tatgtaaata agtttggctc agtccaatat cccctcctat      2940
     cagatattgc cagagatatt tggaggtggt gtgaggaacg aaatatctac cttatggcat      3000
     cttacattgc atcgatggac aatgttattg cagacagcga atcacgtata gtgaataccg      3060
     acacagagtg gtctctttca gctcaggcat ttaatcttat cgagagatcg tttggtcctt      3120
     tcgacatcga tctttttgca tcattaataa atgcaaaaac tgtgacttac gtttcctggg      3180
     ccccggaccc aggcgcctgg gcgatagacg cttttacgct atcttggcac tctttctatt      3240
     tttacgcctt tccacccttt attttgattc ccagagtttt acgtaagata attgatgatg      3300
     aagctacggg aattttggtc ataccatggt ggccatctca accatggttc ccaatgtttc      3360
     atcatcttct aatcgctgac cctatctttt gtgcaccttc tcattctctt ctatcatctc      3420
     cttttagacc tcaacatccg gagtggaaga acctttccct ggcagcaggg aaattatcag      3480
     gaaggcattc agatctcagg cagtcccatc atcagcttta gacatcattt tggcctcgct      3540
     ctctacagcc acatttaaac aatacgctcg ccctctaaga tcctggtgga gtttctgtca      3600
     gaaatatcgg atttcaccct tttctccgga agttaaccaa gtactcgagt ttcttactca      3660
     ggaactaaag aaggtcggtt cttattcgtc gtttaacacg atccgttcag cagtctctct      3720
     gatttccgac aacgcaatcg gcaatcaccc cctgatcaaa cgttttggca ggggagtcag      3780
     tgtcatgaaa ccacagaaac ctcggtatga ttttatttgg gacccagctc cggtaattgc      3840
     gaagctagca aaaatttttc cctatgattc cctaacgcta gatactatca gtaggaaatt      3900
     agttcttctc ctagccttag cctcaggaca gcgcgcacaa actctcgcgg ctattagagt      3960
     cccatatatc ttttctaaca aataataaac ttattattag aattcctgac agaataaaga      4020
     cctctgcccc aggtcggatc caacctctcc tcacttttcc acggttttcc gaccgcccag      4080
     agctttgtat tgctaccatt ttagaatatt atctacagcg taccaaagaa ctacgtcctc      4140
     cggattgtga ggcattgttt atttcgtgtg ttaaacccta taaagcggtc ggagtccaga      4200
     cggtgagtcg ctggattcgc agaggtctgg aggagtgcgg agtgcagagc gatctttttt      4260
     cagcccatag cactcggcat gcttctacct cccttgctgc cgctagggga gtttctctgg      4320
     atcttatcaa gagagcagcg ggctggtccg gagaatctcg aacttttgcg aatttttata      4380
     atcgcccaat tattaacgca gacgactttt gcaattccat tctttcgtcc taagatatta      4440
     ttatcagtat tattatcagt agcagtatta agttacatca agaatattaa gttttttagt      4500
     tagtgatatt ttatttgttt atcttttctt ttgtgataag gatcaaatta attttttgtt      4560
     ataagtttga tgtactacta cccagccttt tattaaagac acattcattt gcaaatcgcg      4620
     ctatgaacaa ctacatagtt gtccatccgg acgagacgtg gcataattgt aagattaaac      4680
     gaacttacca agtgaagttc gatcttaatt atgccttccg tctcgtccgg atggactctc      4740
     ctcaccctaa gcgcttacgc gcttctccca cccttttggc gatttgcttc aagactttaa      4800
     aataatgaag agacaagatg gcggacttgg ggcctggatg tcggagcgcc cccttttcta      4860
     gttttacgat tctgtgaact ctgttgacaa cgcaggcgcg gagacgtaac tacatagttg      4920
     tccatccgga cgagacggaa ggcataatta agatcgaact tcacttggta agttcgttta      4980
     atcttacaa                                                              4989
//
ID   DIRS-1_PPo  repbase;    DNA;    INV; 3805 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DIRS-type retrotransposon from Papilio polytes: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3805
RA   Kojima K.K. and Jurka J.;
RT   "DIRS retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2712-2712 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1013
FT                 /product="DIRS-1_PPo_1p"
FT                 /translation="MTYASXRLRKNIYVPPFIELKSNEDLGRLEQFHKEDC
FT                 LLERTFAAMTNAFLNQKEQLQSSLQTLINWSAEKETQLTPQXLFEKIERLF
FT                 NKDTEYQKIXDDLLQITCGRRADFIXSRRESILKHIPDQYIAASLRKIPPS
FT                 SEYLFDSHILDDYLRKIGGAENLLRAPVATTSATAQTNAPTDRLVNMNEYK
FT                 NSASTSNQSRTKTFRSYGNQKVKQNKIRKGKGSGIKQRQPQVKPPRSRSPP
FT                 RNRQRRA"
FT   CDS           889..2892
FT                 /product="DIRS-1_PPo_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 tyrosine recombinase."
FT                 /translation="MVTKRLSRIKSAKEKVPVLSNDNLKLSHLAPALHLGI
FT                 DNAEHDSRPFRGGCLVQYQHIWRNLGAPNEIYKMLDGIRIPFILRPPLLYP
FT                 SNIVLAKYATNKSILMSEQINAMVRDQILEEAEISPSYLSKFFLIPKQDGT
FT                 YRPIFNLRQLNSFVKIRRFRLFSHFRVPTFLQEKDWMVKLDISQAYYHLPI
FT                 HPQHRRFLRASYNGTLYQMTCLPFGLSSAPGLFATVTNWIAEHLRKQNIRC
FT                 VVYLDDFLLANQSFETLQEQVASVIQLLQHLGWKVNFSKSVLVPTRRLEFL
FT                 GVTWDTLANSKSLSEPKCQTLRSALQKQISLGNWSLRQAQSLMGRLSFASF
FT                 VVRRGRLHCRTIQYHSRHLPTSQPRRQFTIPEPALVEMRWWMKAVSSSSPL
FT                 HAEPIAFLLTTDASEIGWGAQLGQIKMSGLWTEAQKSWHVNCKELYAVHAA
FT                 ISQNQHLLKNSHVLLQTDNCTVMAYINKEGGTKSKKLLHLTRRLLELLDSQ
FT                 DVILTAKFLPGRYNMEVDALSRNKRNPEWHLLPAATRKIFEKWGTPEVDLF
FT                 ASRTAHVVPDYISLDLEDRQALFHNAFLRRWNYNLGWLFPPPNLIPQVLAH
FT                 LNTASGQYILIAPCWEKAFWRADIQQRTGLTPYRIQDLPRVLIDTRTGRHP
FT                 PDIRNISLEAWLIQGGRIL"
FT   CDS           1017..3761
FT                 /product="DIRS-1_PPo_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="LAALSWRLSGTISTYLAQSGGTQRNIQNVRRDSYPLY
FT                 TKAATIVPEQHSPCEICHEQINSNVGTDKRYGSRPNSRRGGDFSELFIKVF
FT                 PNTQARWDLSPNFQPEAIKQLCENSEIPSVQPFSCTHIFTGKGLDGETGYK
FT                 PGLLSFTNTPSASQIPQSQLQRDAVPNDLSSIRTVVSSGTFCNCYQLDRRT
FT                 SKETKHSLCGISRRFLASQSILRDSPGTGGICNTAAATPRMESQLQQICFG
FT                 SDPTSRISRRHLGYTGQFQIPVRTKMPNATQCITKTDFAWQLVSQTGPVPN
FT                 GKTQFRLVRRPQREATLSHNTIPQSASPNISTTPTVHNTGTGSCRDEMVDE
FT                 SSVQLVTTACGTNCISADDRCIRDRMGSPTRTDKNVWTLDRSPEVLACQLQ
FT                 GTLRRSCCNLTKPTPIEELARPIADRQLHSHGLHQQRGRNEVEEAPAPDTS
FT                 APGTLGQSRCDFNGKVPSRSLQHGGGCTISQQEEPRMAPSSSSDEKNFREV
FT                 GYSGGRPICLEDRSCSAGLYFVRPRGQTSSISQCLSQTLELQPRMVISTTK
FT                 SYTSGASTSQYSQRSIHPYSSVLGKSLLESRHTTKNRSNAVPNTGPTTGID
FT                 RYENRTPSPGYSQHILGGMADTRWADLVADWTTEEKTLLLSSWRKSTMKTY
FT                 MAAWSKWKSWCSQQSVDFRCAEPSVVARYLAYLHNTEGLAYRTILVHKSAI
FT                 STLAKSNNQDVSSNFLVRQTLKAISVAKLKNSKPPIWNPKTVLDYLISKNS
FT                 DEQNLYQVSRRVAILLLLASGRRVHDLTLLRIGPEHLMDEGDSLILWPDFG
FT                 SKTDTAEHRQSGWRLEPHPELNLNILYWIRILLKVSEQRRREGDWKELFIS
FT                 TRGVSKPATRTMIGGWVKNVLREAGVRHLQVPSFGSLVIKLDRELHYGPDT
FT                 LHWQLEARTYI"
XX
SQ   Sequence 3805 BP; 1187 A; 862 C; 797 G; 943 T; 16 other;
     agccttttta acaaatttga ttacgcattc wcaaggcaat actgcacaga cmtcwaataa        60
     tatagatgtg tcatcgaaga caacagtgat ggcggataat gtaacagacc aaatmatttt       120
     gaatccacck cctawttcta atactgaaaw atcgcaactt agcatatccg attatgcgac       180
     agtgataaaa gaaccgcttk atccgaaagc gaaagaaaat ttcttaaaaa ggctagaagc       240
     attacaacat ttccaaacaa acgaatggaa tgacatacgc ttctckgagg ctcagaaaaa       300
     atatttatgt acccccgttc atagaattaa aaagtaatga ggatttgggg cgtttggaac       360
     aatttcataa agaggattgt ctcctagaac gcactttcgc agcaatgacg aatgcattcc       420
     ttaatcagaa agagcaatta caatcgtcct tacaaacctt aattaattgg tcggcwgaaa       480
     aagagactca attaacwccc caawctctct tcgaaaaaat tgaacgwttg tttaacaaag       540
     atacagaata tcaaaaaatt wstgacgatt tattacaaat aacttgtggt agaagagccg       600
     attttattaa wtctcgtcgt gaatctattc ttaaacacat acccgaccaa tacattgccg       660
     cgagtcttag aaaaataccc ccaagttcgg aatatttatt tgattcacac attcttgatg       720
     attatttacg caaaattggg ggggcagaaa atctattgag ggcaccagtt gccacaacat       780
     cagcaacagc acaaacgaat gctcctacag atcgtttggt taatatgaac gaatataaaa       840
     attctgcttc aacttctaac cagtctagaa ctaagacctt tcgcagttat ggtaaccaaa       900
     aggttaagca gaataaaatc cgcaaaggaa aaggttccgg tattaagcaa cgacaacctc       960
     aagttaagcc acctcgctcc cgctctccac ctaggaatcg acaacgccga gcatgactcg      1020
     cggccctttc gtggcggctg tctggtacaa tatcaacata tttggcgcaa tctgggggca      1080
     cccaacgaaa tatacaaaat gttagacggg attcgtatcc cctttatact aaggccgcca      1140
     ctattgtacc cgagcaacat agtccttgcg aaatatgcca cgaacaaatc aattctaatg      1200
     tcggaacaga taaacgctat ggttcgagac caaattctcg aagaggcgga gatttctccg      1260
     agttatttat caaagttttt cctaataccc aagcaagatg ggacttatcg cccaattttc      1320
     aacctgaggc aattaaacag ctttgtgaaa attcggagat tccgtctgtt cagccatttt      1380
     cgtgtaccca catttttaca ggaaaaggac tggatggtga aactggatat aagccaggct      1440
     tactatcatt taccaataca ccctcagcat cgcagattcc tcagagccag ttacaacggg      1500
     acgctgtacc aaatgacctg tcttccattc ggactgtcgt cagctccggg actttttgca      1560
     actgttacca actggatcgc agaacatcta aggaaacaaa acattcgctg tgtggtatat      1620
     ctcgacgatt tcttgctagc caatcaatcc ttcgagactc tccaggaaca ggtggcatct      1680
     gtaatacagc tgctgcaaca cctaggatgg aaagtcaact tcagcaaatc tgttttggtt      1740
     ccgacccgac gtctagaatt tctaggcgtc acttgggata cactggccaa ttccaaatcc      1800
     ctgtccgaac caaaatgcca aacgctacgc agtgcattac aaaaacagat ttcgcttggc      1860
     aactggtctc tcagacaggc ccagtcccta atgggaagac tcagtttcgc ctcgttcgtc      1920
     gtccgcagag ggaggctaca ttgtcgcaca atacaatacc acagtcggca tctcccaaca      1980
     tctcaaccac gccgacagtt cacaataccg gaaccggctc ttgtcgagat gagatggtgg      2040
     atgaaagcag tgtccagctc gtcaccactg catgcggaac caattgcatt tctgctgacg      2100
     accgatgcat ccgagatagg atggggagcc caactaggac agataaaaat gtctggactc      2160
     tggacagaag cccagaagtc ttggcatgtc aactgcaagg aactttacgc cgttcatgct      2220
     gcaatctcac aaaaccaaca cctattgaag aactcgcacg tcctattgca gacagacaat      2280
     tgcacagtca tggcctacat caacaaagag ggaggaacga agtcgaagaa gctcctgcac      2340
     ctgacacgtc ggctcctgga actcttggac agtcaagatg tgattttaac ggcaaagttc      2400
     cttccaggtc gttacaacat ggaggtggat gcactatctc gcaacaagag gaacccagaa      2460
     tggcaccttc ttccagcagc gacgagaaaa attttcgaga agtggggtac tccggaggta      2520
     gacctatttg cctcgaggac cgctcatgta gtgccggatt atatttcgtt agacctagag      2580
     gacagacaag ctctatttca caatgccttt ctcagacgtt ggaattacaa cctcggatgg      2640
     ttatttccac caccaaatct tatacctcag gtgctagcac atctcaatac agccagcggt      2700
     caatacatcc ttatagctcc gtgctgggaa aaagccttct ggagagcaga catacaacaa      2760
     agaacaggtc taacgccgta ccgaatacag gacctaccac gggtattgat cgatacgaga      2820
     acaggacgcc atcccccgga tattcgcaac atatccttgg aggcatggct gatacaaggt      2880
     gggcggatct tgtagcagat tggacaactg aagaaaaaac cttattacta agtagctgga      2940
     ggaaatctac gatgaaaacc tacatggcag catggagcaa gtggaagagt tggtgttcac      3000
     agcagtctgt tgacttcaga tgtgcagagc cgtcggtagt cgccaggtat ttggcttatc      3060
     tccataatac tgagggccta gcataccgga caatattggt tcataaatct gctatttcta      3120
     cgcttgcaaa atctaacaat caagatgtgt catccaattt tttagtcagg caaactctaa      3180
     aagctatttc agttgcaaaa cttaaaaatt ctaaaccgcc tatttggaat cctaaaactg      3240
     ttttagatta tcttatttct aaaaattcag atgaacagaa tttatatcaa gtttcgagga      3300
     gagtcgcaat tttgcttttg cttgcatcgg gtcggcgagt acacgacctc accctcctta      3360
     gaatcgggcc ggagcaccta atggatgaag gagattcttt gattttgtgg ccggactttg      3420
     gttcaaaaac agatacggct gaacataggc agtcgggctg gcgtttagag ccacatccag      3480
     aattaaattt aaatatttta tattggattc gtatattatt aaaagtatca gagcagcgac      3540
     gtcgtgaagg agactggaag gaattattca tttcaacaag aggagtgtct aagccagcca      3600
     cgagaactat gattggagga tgggttaaga atgtgctgcg agaggcaggc gtgaggcacc      3660
     tccaggttcc gtcgttcggc agtctcgtca ttaaattgga tagagaatta cactatggac      3720
     cagatactct ccactggcaa ttggaagcaa gaacatacat ttagaacata ttatcacagg      3780
     cagattaaag acatggaaag gaaga                                            3805
//
ID   DIRS-1_SIn  repbase;    DNA;    INV; 4785 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 19.02, Created)
DT   21-OCT-2011 (Rel. 19.02, Last updated, Version 3)
XX
DE   DIRS-type non-LTR retrotransposon: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4785
RA   Jurka J.;
RT   "DIRS-type retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 312-312 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. The ORF is interrupted by mutations
CC   (only the largest ORF is shown). ~50bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1482..3482
FT                 /product="DIRS-1_SIn_1p"
FT                 /translation="GKPQSPCVETSTHGSQHRGQNEVGPIPQHSPPISLPD
FT                 TISPLEEVRTAGRLSKYILQWKKVTRDPEVLKAIRGYEIPFSSPPPIRNRL
FT                 QEPNFSTTMAEACDKEILRLLSKGAITATSPSADQFLSQFFLIEKTSGGMR
FT                 FILNLKDLNYFLSPPHFQLEDWRMVIQLMVQDSWMATIDLEDAYLLVPISP
FT                 RSRRFLRFQWRSVTYEFAALPFGLSTAPYIFTKILRPVLARLRNEGFCSVV
FT                 YLDDFLLFGSSREDCLENLNASMNLLSSLGFLINFSKSQLIPAQSCKYLGF
FT                 IFNSAAQSIAIPPKRRSALLKMISDFSRKSKCRIKDFASMIGSLISICPAV
FT                 QYGLLYTKEFEREKFLALRDENGNYMAKMKISLHLAKEFQWWIKILSDHNQ
FT                 AYFIRSNTAVREIFSDASLTGWGASCGELHTRGWWSESEKSAHINFLELKA
FT                 AFYGLKCFAEDLSNCNILLRIDNTTAISYINRFGSVQYPHLSALAKQIWSW
FT                 CEKRNILLFASYIASIDNSIADRESRIVSLDTEWSLSQAAFSMIRSQFGPF
FT                 DIDLFASIINAKCAIYVSWFPDPGSIGVDAFTFSWSGVRFFAFPPFILIPR
FT                 VLRKIINDKAKGVVVVPWWPSQAWFPLFCRLLTREPIIFSPSYDLLSSPFR
FT                 DHHPAWRTLFLAAGSLSG"
XX
SQ   Sequence 4785 BP; 1280 A; 1121 C; 1008 G; 1376 T; 0 other;
     attatgctct gtggttttgt ccgtatggac aattatactg tagtagtgtt cctgctacac        60
     tttgtcacca acagtttaga ataggcgccg aaaaacgaaa ggtggcgccc ttgatcggat       120
     actcgcgcct tcagtctcct acggttctat tccgttccgc catatcattg tttttctgtt       180
     gcacgcaacc aacagttagt tcgtttctct attcgattat tttgcagtga attatcgttc       240
     tcgatatgcc taaacataag cacaggcatc gttatcgttc tgtgagacgt tcacgggaac       300
     gagattcaag aaattcatcg agagatcccg tctatcagac agatctcgac gcatcctcaa       360
     tagaggttag ctcacgcgcc tcgcgcgggg actcccctgc ccctcatctc aacgtgatga       420
     gttgacttcg gcactcaggg agatcctcgc ttttatgaga gagtacacca ctccgaggat       480
     tcctgaaata gacgcttcgg gtcatatcca ggacgtcgta ccagaggaca tcgtaccgga       540
     ggacatggta acaggacacg tcgtggccga ggacactgat ccttccctgt tgggagagct       600
     acaaatctct catacagagg ttaacgggca ggcagatagg cagacggttc ttcagaaccg       660
     gggcggcgaa ccaggtatgt tccttcgtta cggcaaagaa ggaacataac cgattgcctt       720
     atctgaccat gcttctttct tttttcagac caacggtgtc caccgacggt tcgcttcgac       780
     cccgaggtaa ttattgcgag ctcgccagat atagataaag aaaatgacgc ttctctgata       840
     aacgaattgt tcggagagca tccggtttca aatgagtctc cctgggaccc tacggttttc       900
     gaatctacta aaggtgaagt tcgctcgggt ctgaaagaag agctgcgtac gaatctgctc       960
     tcaaaattcg aaattaaagg aagtttagca gatatcggac cccctaagtt aaacaacgaa      1020
     ataaggtcgg cgttgtcaaa acatcgtagc gtcttaaagc gggacgaata ccaatgtaaa      1080
     gctcagttac aggtaggcgc ttgcctcaac gcttttggct caggaatttc agatctcttg      1140
     aaagcctatc aaggccgacc tttgcagccg aatgtaaaat ctgctattgc aaaattggcg      1200
     gatggcatcc acctactggc ggaccaccag tataggctgt ccctagctag acaatcagtc      1260
     atcaagccat gtctgacatt tgtgggaaag tcagcagccg accaatccgc agtcgacgaa      1320
     tggctctttg gctcgacttt tgcagaaggt ttgaagtcag cccaagcttg tgaaaaagca      1380
     ggcaaggacc tatcgaggtt ttcttcagga tctagtgcat tgactaaaac aggctatcaa      1440
     cttagtcaac aacagccaac gaagcagctc ctaacctata agggaaaccg caaagcccct      1500
     gtgtcgaaac aagcacccac ggttcgcagc acaggggcca gaacgaagtc ggaccgatcc      1560
     cgcagcactc gccaccgatc tcgctcccgg acacgatctc accgttagaa gaagtaagaa      1620
     cggctggtag actctcaaaa tatatattgc agtggaaaaa ggtaacgcgg gatccagagg      1680
     tattaaaagc gattcgaggc tatgaaatac ccttctcctc acccccgcct attcgtaatc      1740
     gtttacaaga gccgaatttc tctacaacca tggccgaggc ctgcgataaa gaaattctgc      1800
     gcctactttc gaagggtgct ataacagcca cttcaccctc tgcggatcaa tttttatcac      1860
     aattctttct catagaaaag acatcgggtg gaatgcgttt tatcttgaat ttaaaagatt      1920
     tgaattattt tttatctccc cctcattttc agttagagga ttggcgcatg gtgattcaat      1980
     tgatggtcca ggattcatgg atggcgacta tagatttgga agatgcttac ttactcgtcc      2040
     caatctctcc cagaagtcgc cgctttctcc gttttcagtg gcgtagcgtc acgtatgagt      2100
     tcgcagcctt gccttttggg ctctccacag caccatatat attcactaaa attttgagac      2160
     cagtattggc ccgattgcgg aatgaaggat tttgctcggt tgtctatctg gatgattttc      2220
     tgcttttcgg gtcctcgcgg gaggactgct tggaaaatct aaacgcttcc atgaacttgc      2280
     tttcgtcttt aggtttcctt attaattttt cgaaatcgca acttatccct gcacaatcct      2340
     gcaaatactt ggggtttatt tttaattccg cggcgcagtc gattgcgatt ccccccaaaa      2400
     ggcgctcagc tcttcttaaa atgatctccg atttctcaag aaaatctaaa tgccgaatta      2460
     aagattttgc aagcatgatc ggctcgctaa tttcaatatg tccggcggtg cagtacggac      2520
     tcctgtatac taaagaattc gagagagaaa aatttctagc actaagggat gaaaacggta      2580
     attatatggc caaaatgaaa atttctctcc acttggctaa agagttccaa tggtggatta      2640
     agatcttatc tgatcataat caggcttatt ttatccgttc gaatacagca gttcgagaga      2700
     tattttcaga tgcatctcta acggggtggg gcgcttcttg cggtgagttg catactcgag      2760
     gatggtggtc ggagagtgag aaatccgctc atataaactt ccttgaacta aaagctgctt      2820
     tttatggttt gaaatgtttt gcagaggatc tttctaattg caacatcctt ctccgcatag      2880
     ataacacgac agcgatatca tacatcaatc gttttggttc tgttcagtac ccgcatctat      2940
     cagccttagc aaaacaaatc tggtcatggt gcgaaaagcg taatattttg ttatttgcat      3000
     cttatattgc ctcgatcgat aactctatcg ctgatcgaga atctagaata gtgagtctag      3060
     atactgagtg gtccttatca caagccgcct tttcgatgat tcggtcacaa tttggccctt      3120
     ttgacataga tctattcgct tcaatcatta atgcaaaatg tgcaatttac gtatcttggt      3180
     tcccagatcc gggctctata ggagtagatg catttacatt ttcttggtca ggtgtaagat      3240
     tttttgcatt tcctcccttc attttaatac ctcgagtcct tcggaaaatt ataaacgata      3300
     aggcgaaggg tgttgtggta gtgccctggt ggccttcaca agcctggttt cccttgtttt      3360
     gccgtcttct aaccagagag cccataatat tctcgccatc ttacgatttg ctctcttctc      3420
     ctttcagaga ccaccaccct gcatggagaa ctcttttcct ggcggcaggg agcttatccg      3480
     gctagccttt caaaatcgag aagttccgca gagggctcta gaggctatgt tagcctcatt      3540
     atccagttca acagttaggc aatactctaa gcctttgaaa gactggtggt tttattgcca      3600
     atccatttcg atttctcctt tcgcgccaag ccctgcgcaa tttttagagt ttttagctca      3660
     agagctgcaa caagcaaact catactcaac aattaacacc atgcgtagcg ctatctctct      3720
     tattacgcat aacgagatag gaaatcacgc gttaataaaa cgcttttgta aaggagtagg      3780
     agtcctgaaa cctcctcgcc ctcgttacga ccttatttgg gatccggctc cagtactagc      3840
     taaactcgcc acctggttcc cttatgattc gctttcgctt gatgttatta caaagaaatt      3900
     ggtcctactc ctcgccttgg gcaccggcca acgtgtacag acgcttgcgt cttttaaact      3960
     atctcaaatt tttatggggg ataaacttgt tatcaaagta ccagggcgca ttaaaacatc      4020
     cgccccaggt cgttcacaac cgtccttctc gttctctcca tttgaaggta acgaaagtct      4080
     ttgcatttac aaattggcta aacattattt agaggtaacc cgaaatttac gaacttcctc      4140
     ggacgattct tttttcattt ccttcgttcg ccctcacagg gccgttggtc aacagacgat      4200
     tagtcgctgg ttacgttcga gcctagaaga ctgtggagtt aggaccgatt tcttcgcatc      4260
     acacagtacg cgccacgctt caacttctcg ggcagcccaa aaaggagtaa ctttagattt      4320
     aataaaacgg gctgcaggtt ggtcggggtc atcccaaatt ttcgcgcgtt tttataaccg      4380
     tccaattata aatccggaag aattcagcaa ttccgtccta cagccttaaa tattcatagg      4440
     tcttactgaa tttgaaagat tcatagataa aattttcaca ccttatagat aagattttat      4500
     agataagagc aggagtactt gaagctattt tagaacctgc gaaaagcgtt tgtcctctct      4560
     ttctattccg ttacttgtta atctaggttt taatagcgca taaacgtgta atgtcattaa      4620
     gttactgaca agaaatatcg acaagatata ttcttttgta ttaagatgtt caataaacag      4680
     aaaaactaac gagaagaatc tagttttctt ctctttcttc aaaacgcaaa tcgccctctg      4740
     aacatctaca gtataattgt ccatacggac aaaaccacag agcat                      4785
//
ID   DIRS-1_SiOr repbase;    DNA;    INV; 5088 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5088
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 4-4 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           968..1558
FT                 /product="DIRS-1_SiOr_1p"
FT                 /translation="MLKYKVPANCKALHPPQINNEVQPCLNKSVLDHDRFI
FT                 SALQQQLAHGLSAIGTVIEAMMPNKEQVDNMKSLAEACQLFTNVHHGLSVH
FT                 RRFKIIPHLNPECKKVVDSLEIDDFLFNKKFADTMKNEQIIKKASADFKKK
FT                 NWQTKFSRPSINTSMYHLNYRRGPPREKMKEKRRREEKKPSGYQKYHKKVP
FT                 RKYHRQE"
FT   CDS           1399..3444
FT                 /product="DIRS-1_SiOr_2p"
FT                 /translation="IFKTINKYINVSFKLPAWASQRENEGKKEEGRKEAIR
FT                 ISEVSQESPQEIPSPGIDMEEDVSNCAGRLSRFLQSWKHITKDRAVLDWVT
FT                 GIKIPFIKKPVQYFEPSVQISDKLLPQYKKSIQQMLEIGAIEECHSSIGQF
FT                 ISSYFIIKKPSGCYRFILNLKSLNKFLFAPHFKLENYRTVIKLINKNCYLS
FT                 NIDLKDAYYLISVNKKYRKYLRFRFENRLYQFSCLPFGLNIAPYIFTKLMK
FT                 PLTKKLRLMEISTVFYLDDILIIGKNKNECKKYTKIVLSELAKLGFIINNK
FT                 KSMLIPQQTIRFLGFIYNTNKMTISLPGEKRKAIQNLILNLRKKRKCTIRE
FT                 FAQLIGKLVASCPSTKYGFIHIKQFEKIKHFLLRGDYYNYNKKMHIPTSLN
FT                 NELEWWHNNIGLGQSIKSKNFSLEIFSDASKTGWGAFCNGHRCHGFWNNKE
FT                 QVKHINFLEIKAAYFALRSLAKDKENISILLRIDNQTAISCINRGGSVKYS
FT                 YLDNITKALWQWCEKKCIIVFASYISSSANFEADRESRFFSINTEYELNDT
FT                 VYNQIIQRFGSPEIDLFATRINKKCNKFVSWFPDPESWKVDAFTIRWSEFF
FT                 FYAFPPFSIITRVLEKIVQEKGLGIVVVPYWPTQAWYPLFTKLLLEKPIYF
FT                 KANKFLLVSPFRDYHPLHEEISLVVGKLSGRLI"
FT   CDS           3348..4400
FT                 /product="DIRS-1_SiOr_3p"
FT                 /translation="SKQIFTCLSFQRLPPTTRGDFPGSREIIRQAYIRKGV
FT                 PVTAIEIIEASISKGTLKQYTSCYKKFWQFCADSNRDPLVYKLETYLDFLS
FT                 DALKEGLSFSVVNSYRSALNLIFSPISNNDEKVINRFVKGVSNIRPPGPKY
FT                 KITWDPDPLLKYLGTLYPLEALDLEYATYKLVTLMALTSASRVQTLSLIKV
FT                 QNINISVDRVEIKIPDRVKTSAPGRFQPLLIFPFFKSKQELCVASTIADYI
FT                 KRTKPIRNTEEKLILTHKKPHRSASSQTISRWIKNTLNLGGVDTSIFSAHS
FT                 VRHATTSAAYKAGVNIEIIKNTAGWTPASNTFFSFYNRPVEKPQDKFAKAI
FT                 IELGSNKS"
XX
SQ   Sequence 5088 BP; 1812 A; 836 C; 858 G; 1582 T; 0 other;
     ttttccttcg cttgtccttg atataattac catgtagttt ccgaataaac ctactcatca        60
     gcacgaactt ttttggagtt tttttgatct gtggcccggt tcgatcgctg cctgtgttgt       120
     cattccgttt tcgtgctcgt cagcgacgac tgtaaacaaa tcgcgtgtgt cgaaaattaa       180
     aaagaaaaat gccgaaaaga ccatttaaag acaaggacca ggacaaatac ggtgaaataa       240
     agagattaaa aaagcaattt agagaaatgc aagaacattt aaataagatt tgtgattcta       300
     gtgaatcatc ttctgaagtt ttttcaacat caggtacgtt ttttttttct ttttagctta       360
     atgaagagtt gtcagataac aaggagaaat ttaggcaggg atatcgtgcg atattccctg       420
     agagacagga aaaccgtgcg gttttttcat gtcgtcctta tataatataa ataaaatgtt       480
     tttaggacaa cgtgcgttgt tcctaaaatt gaaatcgggc gatttcttat ataaacaagc       540
     aattatataa catgagatca ggcgatctca tttgaataga actttgtcag ctggtatctt       600
     cactgaaaga ctgaaaaacc gtgcggtttt ttcatgtcat ccttatttaa tataaataaa       660
     atgtttttag ggcaacgtgc gttgctccta agaaacgaaa tcaggcgatt tcatcacttg       720
     aataggactt tgatgtcatg ttttcttttc agaatcggag gctacctctg atattccaaa       780
     tattccagcc ccagacgtca cagtagtaga tacagaaata ccagaaaatt ctgatcaata       840
     ttttgacgct ttaggtttaa gaccagactc aggggacaat gaaggcaaag acttacatga       900
     agaaattgtt gttcgctggc acagccactt gaaaaaaggg ctatctaaag aacagcgaga       960
     agaattaatg ttaaagtata aggtgcctgc aaattgcaaa gctcttcatc ctccccagat      1020
     aaataatgaa gtacaacctt gcctaaataa gtcggttctt gaccatgatc gttttatctc      1080
     agcgttacaa caacaattgg ctcatggctt atcagcaata gggacagtca ttgaggctat      1140
     gatgcctaac aaagaacaag tagataacat gaaatcattg gcagaggcct gccaattatt      1200
     cactaacgtt catcatggac tttcagttca ccgtagattt aaaatcatac cacatttaaa      1260
     tccggaatgc aaaaaagtcg tggacagtct ggaaatagat gattttttat ttaataaaaa      1320
     atttgcagat acaatgaaaa atgaacaaat cataaaaaag gccagtgctg attttaaaaa      1380
     gaagaattgg caaactaaat tttcaagacc atcaataaat acatcaatgt atcatttaaa      1440
     ctaccggcgt gggcctccca gagagaaaat gaaggaaaaa aggaggaggg aagaaaagaa      1500
     gccatcagga tatcagaagt atcacaagaa agtccccagg aaataccatc gccaggaata      1560
     gatatggagg aagatgtgag taattgcgct ggtagacttt cgagattttt acagagttgg      1620
     aaacatatta cgaaagaccg agcggtctta gactgggtca caggtattaa aatacctttt      1680
     attaaaaaac ctgtacagta ttttgagccc tctgtacaaa tctctgacaa actcttaccc      1740
     cagtataaaa aatccattca gcaaatgtta gaaataggtg ctatcgaaga gtgtcattct      1800
     tcaataggac aatttatatc atcttacttt ataattaaaa aaccctctgg ctgttatagg      1860
     tttattttaa atttaaaaag ccttaacaaa tttttatttg ctcctcattt taaattagag      1920
     aattacagaa ctgtaataaa acttataaat aaaaattgct acctttcaaa tatcgatcta      1980
     aaggatgcat attatttaat ttcagttaat aaaaagtaca gaaaatacct gcgatttcgc      2040
     ttcgaaaatc gtctatatca gttcagttgt ttaccatttg gtcttaacat cgcaccatat      2100
     attttcacta aacttatgaa accgttaaca aaaaaactgc gtcttatgga aataagtact      2160
     gtattttatt tagatgatat tcttattata ggtaaaaata aaaatgaatg taaaaaatac      2220
     acgaaaatag ttctttcaga actagccaaa ttaggattta taataaataa taaaaaaagt      2280
     atgttaatac ctcaacaaac tattagattc ttagggttta tatataatac taataaaatg      2340
     accatttcac ttcctggtga aaaacgtaaa gccattcaaa atttgatttt aaatttacgg      2400
     aagaaaagga aatgcacaat tagggaattt gcccaactaa taggcaaact tgtagcatct      2460
     tgtccttcaa caaaatatgg ttttattcat attaagcagt ttgaaaaaat taaacatttt      2520
     ttgttgcgag gagactatta caattataat aaaaagatgc atattccaac ctctttaaat      2580
     aatgaattag agtggtggca caataatata ggattaggtc aatcgataaa atctaaaaat      2640
     ttctcacttg aaattttttc agacgcctcc aagacgggtt ggggagcgtt ttgtaacggt      2700
     cacagatgtc acggtttctg gaataataaa gagcaggtaa aacatattaa ttttttagaa      2760
     atcaaagccg cctatttcgc cttgagatca cttgctaaag acaaagaaaa tatttccatt      2820
     ttattaagaa ttgataatca aacggcaata tcgtgtatta atcgaggtgg aagtgttaaa      2880
     tactcatatt tagataatat tacaaaagct ctttggcagt ggtgtgaaaa gaagtgtatt      2940
     atagtattcg ctagctatat tagttcatct gctaactttg aggcagatag agaatcaaga      3000
     tttttctcaa ttaatactga atatgagcta aatgacactg tatataatca aattatacag      3060
     agatttggtt ctccggaaat agatttattt gcaactagaa ttaacaaaaa gtgcaataaa      3120
     tttgtttcct ggtttccaga tcctgagtca tggaaggttg acgcgttcac aataaggtgg      3180
     tcagaatttt tcttttacgc tttccccccc ttttcaataa ttactagggt cttagaaaaa      3240
     attgttcagg aaaagggatt aggaattgta gtagtacctt attggcctac acaggcatgg      3300
     tatcccctgt tcactaagtt gttattagag aaacctattt attttaaagc aaacaaattt      3360
     ttacttgtct ctcctttcag agactaccac ccactacacg aggagatttc cctggtagta      3420
     gggaaattat ccggcaggct tatataagaa agggggttcc agtgacagca atagaaataa      3480
     tcgaggcatc tatatcaaaa ggaacactta aacagtacac atcttgttat aaaaaattct      3540
     ggcaattttg tgctgacagt aacagggatc ctcttgttta taagctagaa acatatttgg      3600
     attttttatc cgatgcctta aaagaaggtc tttcattttc tgtcgtcaat tcttatagat      3660
     cagctcttaa tttgatattt agtcctataa gtaataatga tgaaaaagta attaatcgtt      3720
     ttgtgaaggg agtgtctaat attcgaccac caggacctaa atataagatt acttgggatc      3780
     cagaccctct attaaaatac ctaggtacat tatatcctct agaggcgtta gatttagaat      3840
     acgcaactta taaactagtc actcttatgg cactgacatc agccagcaga gttcagactc      3900
     tttctctaat taaagttcaa aacattaata tatcggtaga cagagttgag attaaaatac      3960
     cagatagagt aaaaacatcc gctccaggca gattccaacc gctactaatt tttccgtttt      4020
     ttaagagtaa acaagaactt tgcgttgcgt ccaccattgc ggactacatt aaaagaacga      4080
     aaccaatacg caataccgaa gaaaaactaa ttcttaccca taaaaaacca caccgttcag      4140
     catcttctca gacaataagc aggtggatta aaaatacttt aaacttaggt ggcgtagata      4200
     cgtccatttt ttcagcccat agtgtacgtc acgctacaac ttcggctgcg tataaagcag      4260
     gcgtaaatat agagataatt aaaaatacag caggctggac tcctgcctcg aacaccttct      4320
     ttagttttta taatagacct gtagaaaaac ctcaagataa atttgccaaa gccattattg      4380
     aattgggttc taataaatcg tagtgttcta ctgttagtag tattaagtat ttttttatta      4440
     ttatttaggt gttatcaata tatcatattc attctattag ttataagtta aaagttaagt      4500
     tctttacatt atatactcag tagttagtta taaactcaga gtttatgtta atcatttatt      4560
     agtaaatatg taaaaatata aaaaatataa tttccaaagt tttctaaagt tcaaaaaaaa      4620
     aatatttttt aaattttaga atttatattt cttacaataa gtaattgtta gagaagttaa      4680
     tatcttatga taataattaa ttatatcaat atatggttat aaaaaataaa aaaattgcct      4740
     ttgactttga acatctacat ggtaattata tcaaggacaa gcgaaggaaa attaaaagat      4800
     taatcgactt acctgaagga tgattaatca taattttccg agcttgtccg aagatataat      4860
     tacccaaccc cccctatata ccccagatcc taggcaattt ttttagacac ttcaacggaa      4920
     tgacaacaca ggcagcgatc gaaccgggcc acagatcaaa aaaactccaa aaaagttcgt      4980
     gctgatgagt aggtttattc ggaaactaca tggtaattat atcttcggac aagctcggaa      5040
     aattatgatt aatcatcctt caggtaagtc gattaatctt ttaatttt                   5088
//
ID   DIRS-1_SpEx repbase;    DNA;    INV; 5050 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the beet armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_SpEx.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5050
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 3794-3794 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 148-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..1547
FT                 /product="DIRS-1_SpEx_1p"
FT                 /translation="MEPVSTERTDIVASDGEQSSTSSRASDNSSSSSSEFE
FT                 EGMASPLPNKRSRSSARNRKYKPKSVPTDPRIDTLISQVSYISNYLSQYPV
FT                 YYNNSNQNNIGNPIPSTSTSGMSQNISENISKDTSRQFITLPTQPEPLSLD
FT                 WGSLITDIDDKKIIPPSDMDRFLELNKLQQFDSQAWKGIRYKRVLQSCLAT
FT                 PGFTGLRVNDELCHFNSNKDYLASTEQLLAGLSNKVLEQRQLLHSGLQSIV
FT                 DWACANPQNLNPNTLFEKFSVTFGPGSSCHKNSETTMQIICGKRSECIEVR
FT                 RDRILKEIVNENLKTTLRNVPPSSEYLFSREALQPIIQSLGGSQVWLNTPT
FT                 YLKDKKVSVRRDHTYHLKKDNFKNKSKKIDRKFKNSIKKTQPFRQQRPFET
FT                 SNSKSNKDN"
FT   CDS           1456..3429
FT                 /product="DIRS-1_SpEx_2p"
FT                 /translation="IGNLKIQLKRLSPFVSNVPLRHQIQSPTKTIDSQQNF
FT                 SGGCLKFFIGNWAQLGANQFILKSIANYHLPFRKKPPLKFPTQKFLECLST
FT                 KVSPEMTQMVKDLKCKGILEKPLASDPGFFSKMFLIKKPDGGLRPIFDLKA
FT                 LNTFVATKHFYLISQVDIINFLQTNDWLVKIDLHQAYFHLSVAETHRRFLR
FT                 VVYNGEILQLTALPFGLSSAPRTFAAVTNWVAEVLRQRGIRLLVYLDDFLL
FT                 ASQDKSKLMAQVAETLTILESLGWHINYQKSVTTPTHRLEYLGLVWDTHNQ
FT                 TIALPTKKVIRIKNFLTNILSRNSCSLRELQTLLGMLNFANHAIPQGRLHC
FT                 RRAQVLLKKFSQRTQKRPLCFKVREDLRWWLDAIEGSPTPLHKKEITHFLT
FT                 TDAADAGWGASLNSQYLSGRWSINQRNWHSNMKEMYAVFAVISSQGALLTN
FT                 AHILVQSDNRTLVAYIRNQGGTRSQKLLGLTTRLMEVCCRFNITMTAFYLP
FT                 GNLNGIADCLSRGRSVPEWHLLPPATEAIFERWGIPEVDLFATRESAVVPR
FT                 YVTLNSKDGSALFCDAFSRKWMFHLAWVFPPPSMIPRVLAHLNSAVGTYLV
FT                 VAPRWTQCFWFPDLQARALAPALPIGNLKEVLVDQTTGLSLPQVEKLMLQA
FT                 WKIGGGRNK"
FT   CDS           1551..4382
FT                 /product="DIRS-1_SpEx_3p"
FT                 /translation="LTTEFQWWLPKVFHRELGSARGKSVYSEINSKLSFTF
FT                 PKETSSEIPNSKVLRMPIHQSISRNDTDGQRPEVQRNFRKTFSFRSGFLFK
FT                 DVFNKETGWGFAPNIRSQSFEHFCSDKTFLPNITGRYNKFSPNKRLVSKDR
FT                 SSSGLFPSECRGDSQTVFTGGLQWRNTPADSTTIRPVFSTPHVCSSNKLGG
FT                 RSTSSTGHTPFGVPGRFSPGISGQIQAYGSGCGNSHHLGISRLAYKLSEVR
FT                 NHTYAQAGILGTGLGYTQPDNSIADQESNTYKKLSNKYIESKQLLVERTSD
FT                 FTRHAKFCQPCNPSRPASLSQGTSLTKKVQSKNTKKTTLLQSTGGFAMVVG
FT                 CDRGQSNPITQKRNNAFLNHRRSGCGLGSKLEQPIPFGEMVDKSKKLALQH
FT                 ERDVRSFRSHQFPRCSANQRPHSSTVGQQDSCSLYPKSGRDAVAEITGTNN
FT                 QVNGSVLSFQHHNDSILPTRKPERHRRLPVKGKVSTRMASLTTGHGGNIRK
FT                 VGHTRSRSLRNKRKCCSTQVCNAKLKRWLSAFLRRFQSKMDVPSGVGIPTS
FT                 KHDTQGPSTLEQCSRNILGGSTPLDSVLLVSGSTGTRSSACTADREPERSV
FT                 SGPDNRAKPPSSGEANASGLENWGWEEQVADWSVEEQQLLQNSWRPSTLTT
FT                 YSAPIKRWLQWCKTHNVDHKNPEGKDVARFLASLFLHNNFAYSTILLHKSA
FT                 IATYCAATVENLSKNFFIQQVLKAVSLSRPLPPKLPVWDVSILFRWLQSST
FT                 CSNSLFEQSRRTALILLLASGRRLHDLTLLELTEQGFVEAEDTITFWPKFG
FT                 SKTDSVSHRQSGWLLIKHQDLRICPVSHVKQLVKISEARRSPDRQVRSLFV
FT                 SITGVLRPASKTMIAGWVRSAFKLAKIDASPGSIRSAVASRRWLDNRPVQE
FT                 ILDRGNWKCLETFSKHYCKEISNPVNSVASDLLYDNFKTV"
XX
SQ   Sequence 5050 BP; 1594 A; 987 C; 1004 G; 1465 T; 0 other;
     tattatatgc cttcgaaaac acagcaatga tatgaagaag cagtccttat gattctgtgg        60
     aaattccttc gaaatttgaa taaaatattg agtttacctc catatttctg acaccagagg       120
     gcgccaacga ttttaccgcc attttcgtcg tcatttgtca ttgcattctt gtgattcgaa       180
     agaaatacac aaatttttta ttttccataa atttcattta aacttattta agttttagtg       240
     agtgttcgta tagtattgca ctttagaaca ctgtgttctt tagtagaacg aaacgtaagt       300
     tgtatttggt gaaaacacag gagtgtacgt tttttatcat ggaaccggta agtacggagc       360
     gaaccgatat tgttgcttcg gatggagaac aatcatcgac aagctctagg gcatcagaca       420
     atagctcctc ctcatcctcg gagtttgagg agggcatggc gtcaccgttg cccaataaac       480
     gttctcgctc gtcggcgcga aaccgtaagt acaagccaaa atctgtaccc actgatcctc       540
     gtattgatac attaatatca caagtgtctt atatttcaaa ttatttaagc cagtatccgg       600
     tttattacaa taatagtaac cagaataata ttggaaatcc aataccaagt actagtacta       660
     gcgggatgtc acagaatatt agtgaaaaca ttagtaagga tacttcaagg caatttatta       720
     cacttcccac acaacccgag ccattgtctc ttgattgggg atctttgatc actgacattg       780
     acgataaaaa gattattcca ccaagtgata tggatagatt tttagaattg aacaaattac       840
     aacagtttga ttctcaagct tggaagggta ttaggtacaa gcgagtcctg cagagctgtt       900
     tagcaacccc tgggtttaca ggacttcgtg taaatgatga gttgtgtcat tttaatagta       960
     ataaagacta tcttgcttca acagaacaac ttttagcggg tttgtcgaac aaagttttag      1020
     agcaaaggca attattgcat tcaggtttac agtctattgt cgactgggct tgtgctaacc      1080
     cacagaattt aaatccaaac actttatttg agaaattttc tgttacattt ggacctggtt      1140
     cttcatgcca taagaactct gagaccacta tgcagattat atgtggaaag cgttctgagt      1200
     gtatagaagt taggcgtgat cgcatactaa aggaaattgt aaatgaaaat cttaaaacta      1260
     ctttaagaaa tgttccacct agttctgagt atttgttcag tagagaggcc ttacagccta      1320
     taattcagtc ccttggagga tctcaagttt ggttgaatac tccaacctat ttaaaagata      1380
     aaaaagtatc agtgcgtaga gatcatacat atcatctaaa aaaggacaat tttaaaaata      1440
     aatctaaaaa gatagatagg aaatttaaaa attcaattaa aaagactcag ccctttcgtc      1500
     agcaacgtcc ctttgagaca tcaaattcaa agtccaacaa agacaattga ctcacaacag      1560
     aatttcagtg gtggttgcct aaagtttttc atagggaatt gggctcagct aggggcaaat      1620
     cagtttattc tgaaatcaat agcaaattat catttacctt tccgaaagaa acctcctctg      1680
     aaattcccaa ctcaaaagtt cttagaatgc ctatccacca aagtatctcc agaaatgaca      1740
     cagatggtca aagacctgaa gtgcaaagga attttagaaa aacctttagc ttcagatccg      1800
     ggtttctttt caaagatgtt tttaataaag aaaccggatg ggggtttgcg cccaatattc      1860
     gatctcaaag ctttgaacac ttttgtagcg acaaaacatt tttacctaat atcacaggta      1920
     gatataataa attttctcca aacaaacgac tggttagtaa agatcgatct tcatcaggcc      1980
     tatttccatc tgagtgtcgc ggagactcac agacggtttt tacgggtggt ttacaatgga      2040
     gaaatactcc agctgacagc actaccattc ggcctgtctt cagcaccccg cacgtttgca      2100
     gcagtaacaa actgggtggc cgaagtactt cgtcaacggg gcatacgcct tttggtgtac      2160
     ctggacgatt ttctcctggc atctcaggac aaatccaagc ttatggctca ggttgcggaa      2220
     actctcacca tcttggaatc tctaggttgg catataaatt atcagaagtc cgtaaccaca      2280
     cctacgcaca ggctggaata cttgggactg gtctgggata cacacaacca gacaatagca      2340
     ttgccgacca agaaagtaat acgtataaaa aactttctaa caaatatatt gagtcgaaac      2400
     agttgctcgt tgagagaact tcagacttta ctaggcatgc taaattttgc caaccatgca      2460
     atccctcaag gccggcttca ttgtcgcagg gcacaagtct tactaaaaaa gttcagtcaa      2520
     agaacacaaa aaagaccact ttgcttcaaa gtacgggagg atttgcgatg gtggttggat      2580
     gcgatagagg gcagtccaac cccattacac aaaaaagaaa taacgcattt cttaaccaca      2640
     gacgcagcgg atgcgggctg gggagcaagc ttgaacagcc aatacctttc ggggagatgg      2700
     tcgataaatc aaagaaactg gcactccaac atgaaagaga tgtacgcagt tttcgcagtc      2760
     atcagttccc aaggtgctct gctaaccaac gcccacattc tagtacagtc ggacaacagg      2820
     actcttgtag cctatatccg aaatcagggc gggacgcggt cgcagaaatt actgggacta      2880
     acaaccaggt taatggaagt gtgttgtcgt ttcaacatca caatgacagc attttaccta      2940
     ccaggaaacc tgaacggcat cgcagattgc ctgtcaaggg gaaggtcagt acccgaatgg      3000
     catctcttac caccggccac ggaggcaata ttcgaaaggt ggggcatacc agaagtcgat      3060
     ctcttcgcaa caagagaaag tgctgtagta cccaggtatg taacgctaaa ctcaaaagat      3120
     ggctcagcgc ttttctgcga cgctttcagt cgaaaatgga tgttccatct ggcgtgggta      3180
     ttcccacctc caagcatgat acccagggtc ctagcacact tgaacagtgc agtaggaaca      3240
     tacttggtgg tagcaccccg ttggactcag tgcttctggt ttccggatct acaggcacgc      3300
     gctctagcgc ctgcactgcc gatagggaac ctgaaagaag tgttagtgga ccagacaaca      3360
     gggctaagcc tccctcaagt ggagaagcta atgcttcagg cttggaaaat tgggggtggg      3420
     aggaacaagt agcagactgg agtgtagaag agcaacagtt gttgcagaac agctggcgtc      3480
     cttccaccct aacaacatat agtgctccaa taaaaagatg gttgcagtgg tgtaagacac      3540
     acaatgttga ccataaaaat ccagagggta aggatgtggc tcgcttctta gccagtcttt      3600
     tcctccataa taactttgca tacagtacaa ttcttttaca caagtcggcc attgccactt      3660
     actgcgcagc gacagtggaa aacctctcaa agaatttttt tattcaacag gttttaaaag      3720
     ctgtctctct ttccagacca cttccaccta aacttcctgt atgggatgtt agcattttat      3780
     ttagatggtt gcaatcttcc acttgttcaa attctttatt tgaacaaagc agaagaactg      3840
     ctctgattct gttattagca tcaggcagaa gattacatga tcttaccctc ttggaactta      3900
     ctgagcaagg gtttgtagaa gctgaagaca ctataacatt ctggcctaaa tttgggtcaa      3960
     agactgactc agtttcacac agacaatcag gctggcttct cataaaacat caagacttaa      4020
     ggatttgtcc agtaagtcat gtaaagcagc tagttaagat ctcagaggct agaagaagtc      4080
     cggaccgcca ggttagatct cttttcgtct ccatcactgg agtactgaga cctgcatcca      4140
     aaactatgat tgcaggatgg gttaggtcag cttttaaact agcaaagatt gatgcttccc      4200
     caggtagcat cagatcagca gtagcttcta gaagatggtt ggacaataga ccagttcagg      4260
     aaatactaga cagaggaaat tggaaatgtt tagaaacatt ttctaaacat tattgcaaag      4320
     agataagtaa tccagttaat tcagtagcaa gtgatttact ttatgataat ttcaaaactg      4380
     tttgagttat attgcatata aagttttatt tatattaaat tttaatttta tgattgttgt      4440
     aaaagtaaaa tacctaattt tacttttaat caattattga taataagaag tttctattat      4500
     tgttattttt attaattttc ataaattgtt gttaaatact aattaaatta gtttaatttt      4560
     atgttaacct ttagaaaatt tcatggatga aaaacatttt gttttccttg atttttaata      4620
     aacattgtta ttttcaagat atttatcatt tcataatata atttgtcaat gacattcaca      4680
     ttgcattctt gtgtgtgtgg atatttctga tcaccagcag atatcaaaca ggtcttcata      4740
     tcattgctgt gttttcgaag gcatataata taactgtttt gcattaagac aaaacaggta      4800
     ttatatggtg aagaaaacac agcaatgaga caaggttctt gctgatgatg aagactacaa      4860
     tgacaaatga cgacgaaaat ggcggtaaaa tcgttggcgc cctctggtgt cagaaatatg      4920
     gaggtaaact caatatttta ttcaaatttc gaaggaattt ccacagaatc ataaggactg      4980
     cttcttcata tcattgctgt gttttcttca ccatataata cctgttttgt cttaatgcaa      5040
     aacagttata                                                             5050
//
ID   DIRS-1_SpFr repbase;    DNA;    INV; 5294 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the fall armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_SpFr.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5294
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1643-1643 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 151-bp subterminal TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           595..1926
FT                 /product="DIRS-1_SpFr_1p"
FT                 /translation="MDDQVDVSAAEPQVVAGPSGRTRKRNVSSSSSSTTSS
FT                 SSSSSSSPKRTKRSRRSRRKKNKRARQSNSTLGKLIKEVQELREQVFVNNT
FT                 HNACHDGLSVCSGVSGELYDQHFEEQTECPNVDDKNSQLDFTFDIETKLKE
FT                 PSVPKTPENLLKMLLDVQRLGSSAWSEVRYSDTQKLYNHSPGFIDLDTNEE
FT                 IKMYDTLRHLAHADKSYAAITFCILKQKESLQEAIRNLLLWAKSTQVNYDN
FT                 LSGKVEELFQKGDLHKISSDLLQLVCGHRAESIEMRRDAITTQIRDPLVKA
FT                 SLNRIPPTSTHLFSPDLFATALEKAGGVRKAFWPPKSESHTRSNQGNRRPS
FT                 RGLGVHKPIASSREAQHCICCHEPGIPIHMHTYDNTPSRGGYFRTNHVNKG
FT                 QSLPSFQSDQYASRGSFHNRGSRSDRGSNRSRGRSSHSKSSRGNQKRYKQ"
FT   CDS           1930..4758
FT                 /product="DIRS-1_SpFr_3p"
FT                 /translation="LDSLSSGSVGALPLEVDGNGSARNCSKINSRVSHTIY
FT                 QKTASDIPKSNKRAVPNACFKRNVCNNRQNEISGYSKSCSTLTELRLPSIF
FT                 DTKARRVISTHIQSENVKQICKGPTIPFNKYVSHPRLLATSRLDVQNRPIA
FT                 GIFPLKNFKVTQALPSPHLQPRTARNDLPSIRFKHCTQNVLNTNELDCPNI
FT                 TRTLGHPNHSLSRRLFNSKSECSRPPRSCANHIRYITRSWLASKFREICSL
FT                 STKNYNIFRDIVESLGQLKIPAKRKDFFAYQKSQFSSRSRDDICKRVAENY
FT                 RTPKLCQLRCPSGPTQSPATINVHELATRPCIEILPTNTKCSKRTGMVDSQ
FT                 LSGINTPTLSSASTLPDNRCIKSWVGSSTEQSGCIGQLVARGTDIAFQSKR
FT                 NASHITRPRRQRSPTPQQLDPDTMRQQDSRQLLKERRRYEIITPNRINLSN
FT                 SEFTGPMSNTLQHTPSPRQVQQSCRPLITCSPSSRMAPNASLYANDICKVG
FT                 NPNNRFVCLGDSSRSLQLCIPRPERPTSPVSRCIQCPLELFTCVDISTPIL
FT                 NSKSPNTPKSIDRDILNSSTTMGQGILARRPQSPSTSSAANSTQVTDAPDR
FT                 HIDGASTPTSTENRPRSLEMWGWSEAVETWTPEQRLLLKNSWRKTTLKTYE
FT                 VAWKRWTSWSMSKNIDMHNPTGTQLAQFLSDLHLIHNLSYNTIILHKSVVS
FT                 TLCNAERSSQLSSHVLVKHILKSIALKNPKCAKPPIWDISQLITYLSNYTV
FT                 NENNIFQISRHTAIILLLCSGRRIHDLTLLQVDPDHYIKSDDSVTLWPQFG
FT                 SKTDCSTRRQSGWKLLTNPNNSNLNPIFWLEKTVQILHERRKASKSFNLFI
FT                 TVRGAPKPASRTVIAGWVKTLFKEAGIIATPGSTRSAVASKSWLENHPLDE
FT                 ILSRGNWQSAKTFQNFYRREVIRSGDSNLNVSELFNPVN"
FT   CDS           1769..3802
FT                 /product="DIRS-1_SpFr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="TKARVYLPFNPTSMLVEAHFTTVARGPIEEVTEVEDV
FT                 QAIQKVLEGTKNVTNNDSIRFRAGQLAHYRSKWTEMGAPEIVLKLIQGYRI
FT                 PFIKKPPLIYPNLINGPFQTPVSKEMSAIIDKMKSQGILKVVQLSPSFVSP
FT                 LFLTPKPDGSSRPIFNLKMLNKFVKAQPFHLINMYRIPDFLQPQDWMCKID
FT                 LSQAYFHLKISKSHRRFLRLIYNQELLEMTCLPFGLSTAPKTFSILTNWIA
FT                 QILRERWDIRIIVYLDDYLIVNQNAHVLRDHVQITLDTLQDLGWQVNFEKS
FT                 VLYPQKTITYLGILWNPWDNLKSLPKEKTFSLIKKVSSVLDQGMISVKELQ
FT                 KITGLLNFASYVVPRGRLNHRQLLMFMNSLPDHASKSYPLTQNVQNELEWW
FT                 IRNCQASTPLHYPPPVHFLTTDASNHGWGAQLNNLAVSGNWSQEEQTLHSN
FT                 QKEMLAILRALEDNAHLLRNSSILIQCDNRTAVSYLRNEGGTKSLPLIELT
FT                 YRILNLLDQCQIHFSIHHLPGKYNNHADHLSRVRQAPEWHLMPACTQMIFA
FT                 KWGTPIIDLFASETAHVVYNYVSRDLKDQQALFHDAFSVPWNYSLAWIFPP
FT                 PFLIPKVLTHLNQSTGIFLIVVPRWDKVFWRADLKVRALAPPLTLHKLQTH
FT                 LIDTSTGLPPPQVQKIVLEVWKCGGGPRQ"
XX
SQ   Sequence 5294 BP; 1691 A; 1149 C; 941 G; 1513 T; 0 other;
     attaaatcct tgaccgtcac tggaagcttt attattgaga gagcatatcc gtttccggcg        60
     atttcttatg attttagtac ttttttgacc tacccagtgg cgccacctgg tgtttgcttg       120
     tcattttagt tacataaaat gtccgagcta cttttttgtt cattggcgtt tcgttctccg       180
     gcgaagcaac ttgtgcgcat cggttcacca tcgatgctta aagttacatt tactttatcc       240
     tttgttttaa atatcctttg ttttaaattt caataataaa tacataattt tatttttaga       300
     ataaaagaaa aataacgtat attttaacgg tttttccgtt cgaaatattt tttaaaatta       360
     ccgaatatcc atttgaatta atctatttca aaatatagtg gtgctgattt aatggtgagt       420
     tcatttgaag aagaaactgt aagtacctac cttacttttt aaaagtgatc aatacttttt       480
     atggttgttc cgtgtggatc acaactaaca tttatttgtt ttgcttcata tttttgtttg       540
     tgctaacaat tttactgttt tttattttgt tattttgaag ttacaattgt gataatggat       600
     gatcaagttg atgtttcggc tgccgaacca caagttgtgg ccggcccgag tggaaggacc       660
     cgcaaaagaa atgttagcag ctctagtagc agcacgacgt ctagtagctc ttcaagctca       720
     tcttctccaa aacgtaccaa gcggtcgcgc cgctctcgtc gtaagaagaa taagcgcgcc       780
     cgacaatcta actcgacatt gggcaaactt ataaaagaag ttcaggagtt acgcgaacaa       840
     gttttcgtta ataatacgca taatgcttgc catgatgggc tatcagtttg ttctggggtc       900
     agtggagaac tatatgacca acattttgag gaacaaactg aatgccccaa cgtagatgat       960
     aaaaactcac aattagactt cacttttgat atcgaaacaa agcttaagga accatctgtt      1020
     ccaaaaactc ctgaaaatct tttaaaaatg ctacttgacg tccagcgttt aggtagctcc      1080
     gcttggtcgg aagtaaggta ttctgatact caaaaactct acaaccatag cccaggtttc      1140
     atagacttgg acacaaatga agagattaag atgtacgata ccttacgtca ccttgcacat      1200
     gctgataaat catacgcagc aattactttt tgtatcctta aacaaaaaga atctttacaa      1260
     gaagctattc gtaatctcct tttgtgggct aaaagtacac aagttaatta cgataattta      1320
     agcgggaagg ttgaagagtt atttcaaaaa ggtgatttac ataaaatttc ttcagacctg      1380
     ttacaattag tttgtggcca tcgagctgaa agtatagaaa tgcgtcgaga cgcaattacc      1440
     actcaaattc gggatccatt agttaaagca tctttgaaca gaataccccc aacatcaact      1500
     catttgttta gtcctgatct ctttgcaacg gcattggaaa aggctggcgg tgtacgcaaa      1560
     gctttttggc ctccaaaatc tgagtctcat accagatcta atcaaggtaa tcgccgcccc      1620
     tcgcgggggc ttggcgtaca caaaccaata gcttcatcgc gtgaagctca gcattgtatt      1680
     tgttgtcatg aaccaggcat accaatacac atgcatacct atgataacac accctcgcgg      1740
     ggtggatatt ttcgcaccaa tcatgtaaac aaaggccaga gtctaccttc ctttcaatcc      1800
     gaccagtatg ctagtagagg ctcatttcac aaccgtggct cgcggtccga tcgaggaagt      1860
     aaccgaagtc gaggacgttc aagccattca aaaagttctc gagggaacca aaaacgttac      1920
     aaacaatgac tcgattcgct ttcgagcggg tcagttggcg cactaccgct cgaagtggac      1980
     ggaaatggga gcgccagaaa ttgttctaaa attaattcaa gggtatcgca taccatttat      2040
     caaaaaaccg cctctgatat acccaaatct aataaacggg ccgttccaaa cgcctgtttc      2100
     aaaagaaatg tctgcaataa tagacaaaat gaaatctcag ggtattctaa aagttgttca      2160
     actctcaccg agcttcgtct cccctctatt tttgacacca aagcccgacg ggtcatctcg      2220
     acccatattc aatctgaaaa tgttaaacaa atttgtaaag gcccaaccat tccatttaat      2280
     aaatatgtat cgcatcccag acttcttgca acctcaagac tggatgtgca aaatagacct      2340
     atcgcaggca tatttccact taaaaatttc aaagtcacac aggcgcttcc ttcgcctcat      2400
     ctacaaccaa gaactgctag aaatgacttg ccttccattc ggtttaagca ctgcacccaa      2460
     aacgttctca atactaacga attggattgc ccaaatatta cgagaacgct gggacatccg      2520
     aatcatagtc tatctcgacg actatttaat agtaaatcag aatgctcacg tcctccgaga      2580
     tcatgtgcaa atcacattag atacattaca agatcttggt tggcaagtaa atttcgagaa      2640
     atctgttctt tatccacaaa aaactataac atatttaggg atattgtgga atccctggga      2700
     caacttaaaa tccctgccaa aagaaaagac tttttcgctt atcaaaaaag tcagttcagt      2760
     tctcgatcaa gggatgatat ctgtaaaaga gttgcagaaa attacaggac tcctaaactt      2820
     tgccagctac gttgtccctc ggggccgact caatcaccgg caactattaa tgttcatgaa      2880
     ctcgctacca gaccatgcat cgaaatccta cccactaaca caaaatgttc aaaacgaact      2940
     ggaatggtgg attcgcaatt gtcaggcatc aacaccccta cattatcctc cgccagtaca      3000
     cttcctgaca acagatgcat caaatcatgg gtggggagct caactgaaca atctggctgt      3060
     atcgggcaat tggtcgcaag aggaacagac attgcattcc aatcaaaaag aaatgctagc      3120
     catattacgc gccctcgaag acaacgctca cctactccgc aacagctcga tcctgataca      3180
     atgcgacaac aggacagccg tcagctactt aaggaacgaa ggaggtacga aatcattacc      3240
     cctaatagaa ttaacttatc gaattctgaa tttactggac caatgtcaaa tacacttcag      3300
     catacaccat ctcccaggca agtacaacaa tcatgccgac cacttatcac gtgttcgcca      3360
     agctccagaa tggcacctaa tgccagcttg tacgcaaatg atatttgcaa agtggggaac      3420
     cccaataata gatttgtttg cctcggagac agctcacgta gtttacaatt atgtatcccg      3480
     agacctgaaa gaccaacaag ccctgtttca cgatgcattc agtgtcccct ggaactattc      3540
     acttgcgtgg atatttccac ccccattctt aattccaaaa gtcctaacac acctaaatca      3600
     atcgacaggg atattcttaa tagtagtacc acgatgggac aaggtatttt ggcgcgcaga      3660
     cctcaaagtc cgagcactag ctccgccgct aactctacac aagttacaga cgcacctgat      3720
     cgacacatcg acggggcttc cacccccaca agtacagaaa atcgtcctcg aagtttggaa      3780
     atgtgggggt ggtccgaggc agtagaaaca tggacccctg aacaacggtt attgctcaaa      3840
     aattcctggc gtaaaaccac cttgaaaaca tatgaggtag cgtggaaacg ttggacttcc      3900
     tggtcaatgt ctaaaaacat tgacatgcat aatcctacag gtactcaatt agctcaattt      3960
     ttatctgatt tacatctcat tcataattta tcatataata caattatttt acataaatct      4020
     gttgtttcca ccttatgtaa tgctgaaagg tcaagtcaat taagttcaca tgttcttgta      4080
     aagcatattt taaaatcaat tgctctaaaa aatccaaagt gtgctaagcc accaatttgg      4140
     gatattagtc agttaattac ctatctaagc aattacactg taaacgaaaa taatatcttt      4200
     caaatatcac gccatactgc gattatttta ctactctgtt caggcagacg catccatgac      4260
     ttaacactgc tacaagttga tcccgaccat tatattaaat cagatgacag tgttacatta      4320
     tggcctcaat ttggttcaaa aacagattgt agtactcgca gacagtctgg ctggaaactt      4380
     cttacaaacc ccaacaatag taatctaaat cctatattct ggttagagaa aactgtacaa      4440
     atattacacg aaagacgtaa agcttcaaaa tcatttaatt tgtttattac agtcagaggt      4500
     gcaccaaaac ctgcttcacg tactgtcatc gcaggctggg ttaaaaccct tttcaaagaa      4560
     gctggaatca tagcaactcc tggaagtaca cgttctgcag tagcctctaa aagctggcta      4620
     gaaaatcatc ccctggacga aatcttatct cgaggaaact ggcaatctgc taaaacattc      4680
     cagaatttct acagaagaga agtgataaga agtggtgatt caaatctaaa tgtttctgaa      4740
     ttgtttaatc cagttaatta attaataatc aatacaaact ttatttatta attttttgtt      4800
     ataggtactt ttgttctgtt attagatcat caaataataa atactcatat gtacctttct      4860
     atgtttaata ataaatatat ttaattataa cctgtgtttt aaataccaaa aagtttttcc      4920
     gatcacattg gcgttagcac atcagtggcg tcaccaggcg ataacaaaca ggtctcaata      4980
     ataaagcttc cagtgacggt caaggattta atagcagcgt tttacctgaa ataaaacgca      5040
     tattaaatac ttacctcact ggaagcttta tcttcacttc tgcctggtta tattgagcca      5100
     atgaacaaaa aagtagctcg gacattttat gtaactaaaa tgacaagcaa acaccaggtg      5160
     gcgccactgg gtaggtcaaa aaagtactaa aatcataaga aatcgccgga aacggatatg      5220
     ctctctcaat aataaagctt ccagtgaggt aagtatttaa tatgcgtttt atttcaggta      5280
     aaacgctgct atta                                                        5294
//
ID   DIRS-1_TrNi repbase;    DNA;    INV; 5063 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the cabbage looper genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_TrNi.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5063
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 1-1 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. ~145-bp subTIRs. The consensus is
CC   ~86% identical to that of DIRS-3_SpEx.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..1703
FT                 /product="DIRS-1_TrNi_1p"
FT                 /translation="MEKMDNKTDGVASAAVPGPSSPQKRRPRSNSSSSSSS
FT                 NSSSSGSSSSSSGDNPKRSRRNKKKAGKRKRRSERKVRKLAKEVRDLRRQM
FT                 ANQDSGQRVSTNLDYDAISLMSGISENRYEQMLDVQPSIFSACGDQEFTLS
FT                 LETKLKEPSMPKTPDNYLKLLCDLQHLDKSDWNEIRYSDTQKLYNHSPGYT
FT                 DIEMNEEVKAFESPRHLVYADKTFGALTMCVLKQRECLQGTLQELLQWARN
FT                 SDSLNYDTLFQKVNELFSSGDFIRCSSDLLQIICGHRAEIIQMRRDCVTKQ
FT                 AKDPLTKASLKKIPPTCTNLFNAEKFTAAVEKSGGVRKCFWPLQKGNTSST
FT                 SQVDANKRCGPSQGQKLYNKSSQGFAHMPQACQNSTAHSQCVGNNPPSQGV
FT                 CSRGNPPPQGDWNAHSHAGQFNSVAPNNRNSFRGRPNARQNNQTRYGRRRA
FT                 SSPPQRSNDNKRRKY"
FT   CDS           1309..3573
FT                 /product="DIRS-1_TrNi_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="ENAFGRCKKVIRLPPRRWMQISVVAPRRGKSFIINPR
FT                 KDLPTCLRLVKTVPHIRNVSAITHLRKVFAVAVIHLRKVIGMLIVMLVNLI
FT                 RSHRIIAIAFEADQMLGKITRPGTDEDAHHRLHSEVTTTNDVNIDSFRAGR
FT                 LLQFRDQWEQMNAPNYILKIITAYRIPFCQKPPLVHPSVVGKNLNIPESAE
FT                 MTSIMDKMIDQGILERVAVSPSFLSPMFLVPKGDGSSRPIFNLKALNAYIK
FT                 TDRFKLINAYRIPDFLQPQDWLCKIDLSQAYFHVPVARSHRRFLRLIYRNE
FT                 LLEMTCLPFGLSTAPKTFAALTNWIAQTLRQRGVRIIVFLDDFLIAHQDEN
FT                 QLRNHVKTLLETLETLGWLINYKKSVITPSKSLVFLGIHWDPWANRKRLPD
FT                 DKIPGLVARIDHLLWKERTTLKELQSLVGLLNFACFTVPKGRLNFRELQSL
FT                 LNKILKSDHRRLHSLPRPAIENLIWWRRNCQHPSALHMPPPLHFLTTDASD
FT                 IAWGARLDNLSLSGLWSEAEKDLHCNQKEMIAILRVLEDHCQLLRHKTVLI
FT                 QSDNRSVVAYLRHEGGTRSAPLLDLTYKVFQITEQHQIHMNVFYIPGIYNG
FT                 HADHLSRLRMTPEWHLSAKCTNKIFSKWGVPLIDLFASNRAHVVSNYVSLD
FT                 QNDDQALFCDAFSQMWNYNLAWVFPPPFLIPKVLGYLNQAQGTYLVVVPRW
FT                 ERVFWRPDIKSRALAAPFTIHHLDEVLIDKTTGLPPPNVHEMTLEVWKCGG
FT                 GLGC"
FT   CDS           1707..4529
FT                 /product="DIRS-1_TrNi_3p"
FT                 /translation="LVQSGPTPTVSRPMGTNECTKLYSKNNNCVPHTLLPE
FT                 ATTCSPERGRKKPEYSRICRNDIYHGQNDRPGNSGASGCFPKLSFTDVSCP
FT                 QRRRLESTNIQFESAQCIHQNRSVQTDKCVSYPGFSTTAGLAMQNRPFSGI
FT                 FSCSCGSQPQKISASNLSQRITGNDLFTFWSEHSAQDLCCANKLDSPNTQA
FT                 TRCEDNCVSRRFLDRSPRREPASESCQNLARNSGDIRLADQLQKVGHHTVE
FT                 KPSLSRNPLGSMGESQAPSRRQNSWPCGENRSFAVEGAHNSQGAPKPRRSP
FT                 QFCLLHSSERKTQFSRASEPFEQNIEVGSQEITFLTSPSHRKPDMVAPKLS
FT                 TPVGPTHATSSAFSHNRCIGYRLGSSPGQSLTLGSLVRSRERSSLQPKGND
FT                 SNPKSFGRSLSAPETQDGFNSERQQVGSCIPTSRGRYQISSSPGLNLQGFP
FT                 DHRATSNSHERFLHTGYIQRPRRSSIEIADDSRVASVCKMHEQNILEMGSA
FT                 TNRPICIQPGSCSVELRVFRPERRPSPVLRCVFPNVELQSCVGVSSTLSDS
FT                 QGFRLSQSSTGNVLSRSSTVGEGFLATRHQIACPSSPIHNTSPRRSADRQD
FT                 NRATTTECTRNDSRSVEMWGWSGMLKSWNSSQLELLEKSWRPSTRKVYGVA
FT                 WKRWLAWCETHQVNPSSPIASDLARYLSDLHLVNKLSYSSILLHKSVVSNL
FT                 CNPDSSGQLSSNTLVKHVLKSIALQKLIPRVKPPVWNIDDLASFLESKRVD
FT                 ENNSFQVQRHTAALLLLCSGRRIHDLTLLRVDSNNYCSQDNVLVFWPVFGS
FT                 KTDSVDNRQSGWRLFSNKANKNLDPVHWAKCTISLLENRRNAANCNNLFIN
FT                 IRGKPKPASKTLIAGWIKSQLVEAGIKATPGSVRSAVASKNWVDNYPLEEI
FT                 LARGNWRSQNTFSKYYKREVKPSGNRVSVTALFNPVD"
XX
SQ   Sequence 5063 BP; 1492 A; 1139 C; 1066 G; 1366 T; 0 other;
     attaatttga cttgaccgtt attcgaagct tatttaattg agataggcac tacgtttccc        60
     gccttcacat ttctatatat atctatctct ttctactacg tcacttccac ttggcagtgg       120
     tagggaggtt cgcaaagcga gccgcgctat tttgaattca ttggcgtctc ttttcccgcc       180
     gcgatcggtc gtgtcgtatg acacttaaca taatatttta ctacctacat tttaaaatta       240
     aaaaagttcg agtgaaaata ttcgtaacgg tttgacgtcg taacgtttaa aagtgaacaa       300
     agtttattct ttcgatttga attatggaaa aaatggataa taaaaccgat ggagtggcta       360
     gtgctgctgt tccagggcct tcatcgccgc agaagcggcg acctcggtcg aatagttcta       420
     gtagctcaag ttctaatagt tcgagttccg gtagcagctc ctcatctagc ggagacaacc       480
     caaagcgaag tcgccgcaac aagaaaaagg ctggcaaacg caagcgacgt tccgaacgta       540
     aggttcggaa attggctaaa gaagtacgtg accttcgacg tcagatggct aaccaggata       600
     gtggtcaacg cgtgagtact aatttggatt atgatgccat ctcacttatg tccggtatta       660
     gcgaaaatcg ttacgaacaa atgcttgatg ttcaacctag tattttcagt gcatgtggtg       720
     atcaagaatt tactttatct cttgaaacta agttgaagga gccttcaatg ccaaagactc       780
     cagataatta tttaaagttg ttatgtgatt tgcaacattt agataaaagt gactggaatg       840
     aaattcggta ctctgacaca caaaaattat acaatcactc gccgggttac acagacattg       900
     aaatgaacga ggaagttaaa gcattcgagt ctcctcgcca cctcgtgtat gctgataaga       960
     cgtttggagc tttgacaatg tgtgtgctca aacaaaggga atgtctacaa ggcacccttc      1020
     aagaactgtt acagtgggcg agaaatagtg actcgctaaa ttatgacact ctttttcaaa      1080
     aagttaatga gcttttttcc tcaggggatt ttattaggtg ttcctcagac ttattacaga      1140
     ttatttgtgg acatcgtgct gagatcatcc aaatgcgacg agactgtgtc accaaacaag      1200
     caaaagaccc cttgacgaag gccagcttaa agaaaattcc tccaacgtgc accaacctgt      1260
     ttaacgcaga aaagtttact gctgctgtag aaaaatctgg cggagtaaga aaatgctttt      1320
     ggccgttgca aaaaggtaat acgtcttcca cctcgcaggt ggatgcaaat aagcgttgtg      1380
     gcccctcgca ggggcaaaag ctttataata aatcctcgca aggatttgcc cacatgcctc      1440
     aggcttgtca aaacagtacc gcacattcgc aatgtgtcgg caataaccca ccttcgcaag      1500
     gtgtttgcag tcgcggtaat ccacctccgc aaggtgattg gaatgctcat agtcatgctg      1560
     gtcaatttaa ttcggtcgca ccgaataatc gcaatagctt tcgaggccga ccaaatgctc      1620
     ggcaaaataa ccagaccagg tacggacgaa gacgcgcatc atcgcctcca cagcgaagta      1680
     acgacaacaa acgacgtaaa tattgactcg ttcagagcgg gccgactcct acagtttcga      1740
     gaccaatggg aacaaatgaa tgcaccaaat tatattctaa aaataataac tgcgtaccgc      1800
     ataccctttt gccagaagcc accacttgtt cacccgagcg tggtcggaaa aaacctgaat      1860
     attccagaat ctgccgaaat gacatctatc atggacaaaa tgatagacca gggaattctg      1920
     gagcgagtgg ctgtttcccc aagctttctt tcaccgatgt ttcttgtccc caaaggcgac      1980
     ggctcgagtc gaccaatatt caatttgaaa gcgctcaatg catacatcaa aacagatcgg      2040
     ttcaaactga taaatgcgta tcgtatcccg gattttctac aaccgcagga ctggctatgc      2100
     aaaatcgacc tttctcaggc atattttcat gttcctgtgg ctcgcagcca cagaagattt      2160
     ctgcgtctaa tttatcgcaa cgaattactg gaaatgacct gtttaccttt tggtctgagc      2220
     acagcgccca agacctttgc tgcgctaaca aattggatag cccaaacact caggcaacga      2280
     ggtgtgagga taattgtgtt tctcgacgat ttcttgatcg ctcaccaaga cgagaaccag      2340
     cttcggaatc atgtcaaaac cttgctcgaa actctggaga cattaggttg gctgatcaat      2400
     tacaaaaagt cggtcatcac accgtcgaaa agcctagtct ttctaggaat ccattgggat      2460
     ccatgggcga atcgcaagcg ccttcccgac gacaaaattc ctggccttgt ggcgagaatc      2520
     gatcatttgc tgtggaagga gcgcacaact ctcaaggagc tccaaagcct cgtcggtctc      2580
     ctcaattttg cctgcttcac agttccgaaa ggaagactca attttcgaga gcttcagagc      2640
     cttttgaaca aaatattgaa gtcggatcac aggagattac attccttacc tcgcccagcc      2700
     atagaaaacc tgatatggtg gcgccgaaat tgtcaacacc cgtcggccct acacatgcca      2760
     cctcctctgc attttctcac aacagatgca tcggatatcg cttggggagc tcgcctggac      2820
     aatctctcac tctcgggtct ctggtcagaa gccgagaaag atcttcattg caaccaaaag      2880
     gaaatgatag caatcctaag agttttggaa gatcattgtc agctcctgag acacaagacg      2940
     gttttaattc agagcgacaa caggtcggta gttgcatacc tacgtcacga gggcggtacc      3000
     agatcagctc ctctcctgga cttaacctac aaggttttcc agatcacaga gcaacatcaa      3060
     attcacatga acgtttttta cataccgggt atatacaacg gccacgcaga tcatctatcg      3120
     agattgcgga tgactcccga gtggcatctg tctgcaaaat gcacgaacaa aatattctcg      3180
     aaatggggag tgccactaat cgacctattt gcatccaacc gggctcatgt agtgtcgaat      3240
     tacgtgtctt tagaccagaa cgacgaccaa gccctgtttt gcgatgcgtt ttcccaaatg      3300
     tggaattaca atcttgcgtg ggtgtttcct ccaccctttc tgattcccaa ggttttaggt      3360
     tatctcaatc aagcacaggg aacgtactta gtcgtagttc cacggtggga gagggttttt      3420
     tggcgacccg acatcaaatc gcgtgcccta gcagccccat tcacaataca tcacctagac      3480
     gaagtgctga tcgacaagac aacagggcta ccaccaccga atgtacacga aatgactctc      3540
     gaagtgtgga aatgtggggg tggtctggga tgctaaagtc ctggaatagt agtcaattag      3600
     aactccttga gaagtcatgg cgtccctcaa cacgtaaagt ttatggcgtt gcttggaaaa      3660
     gatggctagc ttggtgtgaa acgcaccagg tcaacccctc atctccaata gcaagcgatt      3720
     tggctagata tttatctgac ctccatttag ttaataaatt gtcgtacagt tccatcctgt      3780
     tacacaaatc tgtggtgtca aacctttgca acccagattc atccggtcaa ttaagttcaa      3840
     atacccttgt aaaacatgtc ctgaagtcca tagcattaca aaaattgatc ccccgcgtca      3900
     agcccccggt gtggaacata gacgacctag ctagtttcct agagagtaag cgcgtagatg      3960
     aaaataatag ttttcaagtg cagagacata cagctgctct cctgcttcta tgttccggga      4020
     gaagaataca cgatttaact ttgcttagag ttgattctaa taattattgt agccaagata      4080
     atgttttagt tttttggccg gtgtttggat cgaagactga ttcagtagat aacagacaat      4140
     ctggttggag attattttct aataaggcta ataaaaactt agaccctgtc cactgggcta      4200
     agtgtacgat ctcgctcctt gaaaatcgta gaaatgctgc aaattgtaat aatttgttta      4260
     ttaacattag aggtaaacct aaacctgcat cgaaaactct aattgcgggc tggatcaagt      4320
     cccaattagt agaagccggc attaaggcaa cgcctgggag tgttaggtca gctgttgcct      4380
     caaaaaattg ggtcgataat taccccctcg aggaaattct tgctaggggt aactggcgat      4440
     cgcaaaatac ctttagcaaa tattataaac gcgaggttaa gccctctggt aaccgtgtat      4500
     ctgtgacagc attgtttaat ccagttgatt agaaattatg taattacatt cctgatttca      4560
     tacacttgaa atagcctttt gtttgatcgt gaaatatata tatcttgatt atgtacttat      4620
     gccttcttta ttttaaagcc tacatcatca tattagattg caaaacaacc acatcttagt      4680
     acctaaccct gcatatcaca ttggcgtcct catcacttcc accaggcgat aacaaacacg      4740
     tctcaattaa ataagcttcg aataacggtc aagtcaaatt aatagaagcg ttttacctac      4800
     caataaaacg catattaatt tacttacctt attcgaagct tatgaacaag ttctgcctgg      4860
     taattggact caatgaattc aaaatagcgc ggctcgcttt gcgaacctcc ctaccactgc      4920
     caagtggaag tgacgtagta gaaagagata gatatatata gaaatgtgaa ggcgggaaac      4980
     gtagtgccta tctcaattaa ataagcttcg aataaggtaa gtaaattaat atgcgtttta      5040
     ttggtaggta aaacgcttct att                                              5063
//
ID   DIRS-2_FoCa repbase;    DNA;    INV; 4694 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4694
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2434-2434 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. The sequences 7-133 and 4520-4647
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           791..1456
FT                 /product="DIRS-2_FoCa_1p"
FT                 /translation="MGPSLHPQITERWNAIAKSGLSKEERDKLLDKYPIPE
FT                 GXIIAGAKINPELTSAIPDVVKIKDDSLRRIQDHIATASAAIGNVLGSILD
FT                 DKMEITRHDLISKISDAGRYLLGTQYALSTYRRKQVAANIKDPTMTRVLND
FT                 SEVYPFLFGTDLSNEIKRVKSLTKVGNEIAHKPGSDNSKQDQPKDNKKSGY
FT                 HRTASLNSSRPLPSSGYRTTRKSNRSGPRRHH"
FT   CDS           1810..3468
FT                 /product="DIRS-2_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MEDLRSAIRLMENDCYMTTIDLKNAYYLISVSRSDRK
FT                 FLRFSWKGELYQFNCLCFGLSSAPRTFTKILRPVMRYLRISGIRNVIYLDD
FT                 LLTIGNSYENCLLSTSTTIRILEKLGFIINYDKSKLIPSKSQRFLGFILNS
FT                 SNMTVELPREKAMHTIHLCKRLLDKNTCTVQQLAEFTGTLVACFPAIRYGP
FT                 LYTKLFESTKFLTLLQMGTDYKSQVILNKYIHEDVKWWLTSLTNPISPIRT
FT                 DVINYEYITDASLSGWGAHCNGVAISGLWDGDDKKLSINYLELKAAWYGLR
FT                 SFGKSWSNGTILLRIDNTTALSNINKMGSIQFPHFMKLTRLIWNFCESRNL
FT                 WLVASYIRSKDNDIADFYSRVTQTDTEWSLSSKAFNKMTTKFGSPSIDLFA
FT                 TLQNAKCSIYVSWKPDPFASNIDAFTLSWTDLNFYAFPPFSMILRVLRKIK
FT                 TDQATGLVVVPHWECQPWFPLFKSMLVLEPILFEPNKFLLQFGSSPHPLCH
FT                 SLSLMAGVLSGKRSSHEDSRILLTPSSTHSQIRPGNNTNLPSDVGQNLPIN
FT                 DNFPSL"
FT   CDS           3507..4280
FT                 /product="DIRS-2_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MLKSVGYSSINTARSALSLLATNSEFENIGSNPVVKR
FT                 VIKGVAKMKPPKPRYDVIWDATTVTEYLKTLWPHDQLSISALTEKCVTLLA
FT                 LCTAQRCQTLSKIKISEVKFGHNQIDIFVTDQVKTSGPGKFQPHLILPKFE
FT                 DHEYWCIMTCVRDYISRTQEIRTGDELFVGLSKPHRPVGSQTIGRWIKNTL
FT                 SNSGVDVTLFKAHSVRHASTSKALSNGTNIEEIRSSAGWTPTSSTFAKFYN
FT                 RPIITDNNFAKSVFNIN"
XX
SQ   Sequence 4694 BP; 1416 A; 1047 C; 882 G; 1340 T; 9 other;
     ttatastccg tctcgccctc tacatcataa ttatacactt gtagtcacac catctcacgc        60
     cgtgggtcgc tttatttaga gaggcaaaac gttttcgtcc ctcttctgcc agcatgccgg       120
     tgcacacttc attgcatcac aaaagctccg tgggtccaca cactcgcttt tgtgctcctc       180
     atcacaataa aaaatttcgc aaaactttta attgttttca agatttggta tcaattttta       240
     taamtattag atttataaat ttkattaaca tatttcacga tctaattgtg gtatactttt       300
     tacacaattt gtgaaatttt agaaatgccg gactcwtcag attcgtcatc ggccagatca       360
     tcacgtcata aggacaagaa acggagcagg agagaccgaa aacttcgccg actgsagaaa       420
     caggtcgaca agttggtccg ccgagamagg aaacggaaac ggtctccctc atcatcgtct       480
     gatgactcat cccagacaag taagcgctcc aggtctagac gaccgtcgcc atttttagac       540
     cctggaagcc aagtcccatc aatgggcaat ctaaagtccc atctaatggg caamccaata       600
     tctcatctaa tgagaatcaa caaaattcat ccaatgataa ctgtaatatt ttgccggctg       660
     gaagtggttc atccaagtgt gacactcatt ccaatcgaga aaacggacca gatgatgatg       720
     tccttatctt aatgtgctgg acactgagac agcagccctt ttaggtgact tacctaaacc       780
     tgtggctaag atggggccga gccttcatcc ccaaatwact gagcgatgga atgctatcgc       840
     aaaatctgga ctaagtaaag aggaacgcga caagctcctc gacaagtatc ctatcccaga       900
     gggamtgatt attgccgggg ccaagattaa ccccgaatta acatcggcta taccggatgt       960
     cgttaaaatt aaggatgaca gccttcgccg tattcaggac catattgcca cagcctccgc      1020
     ggctattggc aatgtactcg gcagcatctt ggacgataag atggaaatca ctcgtcatga      1080
     tctaatctca aagataagtg atgccggcag atacctcctc ggcacccagt atgccctttc      1140
     cacatacagg aggaagcaag tcgctgctaa cattaaggac ccgactatga cccgagtcct      1200
     aaatgactcc gaggtttacc ctttcttgtt tggtactgat ttatctaatg aaatcaaaag      1260
     ggttaagtca ttaactaagg ttggtaatga gattgctcat aaacctggtt ctgacaattc      1320
     aaaacaagat caacccaagg acaacaagaa gtctggttac caccgcacgg cttctttaaa      1380
     ctcttcacga ccgctcccga gctcggggta tcgaaccacc aggaagagca atcggagcgg      1440
     tcctcgtcgc catcattaac tcttcaggtg agttcacatg ctgggcgatt gaaacaattc      1500
     taccacgaat ggttgacact cccaagcgtg ggaaagaaag tattgtccat cataaatgga      1560
     tacaaattac cttttaagac cattcccaat ccaacattcc tttctaataa ggaagtttcc      1620
     attcaggaga cgaatgatat tgacacttct attcgcgaac taatccaatt aggcgcaata      1680
     gagagatgca ataacgatcc taaccaattt gtatctccaa tatttttggt tcctaaacca      1740
     gacggctcga agagatttat cattaatttg aaacatctta atgagtacct acaatactcc      1800
     aagttcaaga tggaggatct taggtctgca attcgtttaa tggaaaacga ctgctacatg      1860
     accaccattg atcttaaaaa cgcatattat ctaataagcg tgtcaagatc tgatcgtaaa      1920
     ttcttacgat ttagttggaa aggcgaatta taccaattca attgcctttg ttttggctta      1980
     agttcagctc ctagaacttt taccaagatt ttacgaccag tcatgcgtta tctccgcatt      2040
     tctggcataa ggaatgtcat ctacttggat gacctcctta cgattggaaa cagttacgaa      2100
     aactgcttgt tatccacttc caccacaatc aggattttag aaaagctagg atttatcatt      2160
     aattatgata aatccaagtt gatcccgtca aaatctcaaa gatttttggg atttattctc      2220
     aactcttcca acatgactgt tgaattgccg agggaaaaag ccatgcatac aattcatctt      2280
     tgtaagaggc ttcttgacaa aaatacttgc acagttcaac aactagcaga atttacaggc      2340
     acacttgttg cctgtttccc tgcaataaga tatggtcctt tgtacaccaa actatttgag      2400
     agtacaaaat tcctaactct gcttcagatg ggaactgatt acaaatcgca agttatctta      2460
     aacaaataca tccacgagga tgttaaatgg tggttaacct cattaaccaa tccaatctct      2520
     ccaatcagaa cggatgtaat aaactatgag tatattactg atgcgtcatt atctggttgg      2580
     ggagcacatt gcaatggagt tgcaattagc ggtttatggg acggagatga caagaagttg      2640
     tccataaatt acctcgagct taaagctgca tggtatggac ttcgcagttt tggcaagtcc      2700
     tggtctaatg gcactatctt gctaagaata gacaatacca ccgcattgag taatataaat      2760
     aaaatgggta gtattcagtt tccccatttt atgaagctca caagattaat ttggaatttc      2820
     tgtgagtcaa gaaatctttg gcttgttgcg tcatatatcc gctccaagga caatgacatc      2880
     gcagatttct actccagggt cactcaaact gacactgaat ggagtctgtc atctaaagca      2940
     tttaataaga tgaccactaa gtttggatca cccagcattg atctttttgc aactcttcag      3000
     aatgcaaaat gttcaattta tgtttcctgg aaacctgacc ctttcgcatc caatattgat      3060
     gcttttactt taagttggac cgatttaaat ttttacgcat ttcctccctt cagtatgata      3120
     ctacgggttt tgcgaaaaat taagacagac caagccactg gcttagtcgt cgttccccat      3180
     tgggagtgtc aaccttggtt tccactattc aaatccatgc tggtcctaga accaatatta      3240
     tttgaaccta acaaatttct tttacaattt ggtagttctc cccatccttt gtgccattca      3300
     ctttcactga tggcaggagt cttgtcaggg aagcgctcaa gtcacgagga ctcgaggatt      3360
     ctgctgacac catcatcaac tcactctcaa attcgacctg gaaacaatac gaatcttccc      3420
     tcagatgttg gtcaaaattt accaatcaac gacaactttc catctttata acttctccag      3480
     aagttgtggc ttcctttcta actgaaatgc tcaaatccgt cggttatagt tcaattaaca      3540
     cggcgcgctc agccctatcc ttattagcta ctaactcaga gtttgaaaac attgggtcta      3600
     acccagtagt aaaacgagtt attaagggag tagccaagat gaaaccacca aaaccaaggt      3660
     acgatgtaat ctgggacgca accaccgtga ctgaatatct gaaaactctt tggccccatg      3720
     accaactatc catctcggcc ttgactgaga aatgcgtcac cttgcttgcc ctgtgtaccg      3780
     cacaacgttg tcaaacttta tccaagataa agatttccga agtgaagttt ggtcacaatc      3840
     aaatcgacat ttttgtgact gatcaagtta aaacttcggg accaggaaaa tttcaaccgc      3900
     atttgatact acctaaattt gaagatcatg aatattggtg tattatgact tgtgtaagag      3960
     attacatctc tcgtactcaa gagatacgaa ctggcgatga attattcgtg ggcttatcaa      4020
     aaccacaccg acctgttgga tctcaaacca taggacgttg gattaagaac acgctatcta      4080
     atagtggcgt tgatgtgacc cttttcaagg ctcacagtgt ccgtcatgct tcaacctcga      4140
     aggcattaag caacggaacc aatattgagg aaattcgttc gtctgctgga tggacaccta      4200
     cgtcatcaac ttttgcaaag ttctataaca gaccaattat tactgacaat aattttgcta      4260
     aatctgtttt caatataaat tgattcattt gaaacttata gtctccttag actaagtaaa      4320
     taaaatctcg catttttcga gattctctga acaactacaa gtgtataatt tgatgtagag      4380
     ggcgagacgg actataatta ctaaattaaa cgaacctgtg aagttcgatt gtaattatgg      4440
     tccgtctcgc ccgaatacat cactcccacc caaccctccc tggagtgatg tattcttttt      4500
     cgaaaaatgc ctctcaacta atgaagtgtg caccagcatg ctggcagaag gagggacgaa      4560
     aacgttttgc ctctctaaat aaagcgaccc acggcgtgag atggtgtgac tacaagtgta      4620
     taatttgatg tattcgggcg agacggacca taattacaat cgaacttcac aggttcgttt      4680
     aatttagtaa tttt                                                        4694
//
ID   DIRS-2_HeAr repbase;    DNA;    INV; 6029 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6029
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5282-5282 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 165-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..2459
FT                 /product="DIRS-2_HeAr_1p"
FT                 /translation="MFCLHKHCGPKLGRRGSTFGRRGSPFERRGSPFERRG
FT                 SPFERRGSLFERRAAHHLSGAARYLTGAAQGSSRAALNLGDAAQHLDGAAR
FT                 YLSGAPRALNRSPTCEHSVNFFTLLQMTQLGGVVTLGELLDEHAEAEEENV
FT                 ILERVKVLAQEHLPDGWTNWEVTTATKEEVFGEKVDPNILNKLVVALPTVG
FT                 LVRAFIPEADHLSEKRYREIRHKILDWAFTRALIIGPPAISNRIRGSAART
FT                 EYVKQSVAALMPLLHTRAETDKILSGCLSETEETSRKRRSTSRVKEPATRR
FT                 PRLESPPFSTGTSLQEERFCALEQKMEMLLEMVTQSRGRNKDSDSDSDKEN
FT                 DFSDGEEEVSSDASDAPSWKAPTWGPYPNEQDERNEKELEFRPTTKEADPL
FT                 VPEPSSQAKKEGIECQRLGTDSWNRIRYKDVEKHLHAASPFSPLKVNTELG
FT                 TLASRLSPWVTRQEGILGTITHGLLLQRKALADGLNAIIKKCPDISTDLRR
FT                 LVEAEDSKFKLVSDQLLQYVCANRAETIEVRRKTFRPKNDVLTSALNNIPP
FT                 SPTHLFDEKLFSAFIKDNGGTSGIFASSNLNKKETIHSFRKNSFRKASSHA
FT                 SKSKQPTGRGHSSAATTTTSTRSANYRRSGNSKAPNKHPDRHGKDKKLQRG
FT                 RKY"
FT   CDS           2463..4325
FT                 /product="DIRS-2_HeAr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="QFSRGTVGEISSSVAGVRSSKEDFKNYYRLYNTLCSK
FT                 TTFDSIARKFRKVFHKPVPCYVQGDRDIAQVRCGRELRGCERVPIKNISNT
FT                 QEKRKATANLRFTTLEPISQTPEISSDKSKSSSKFYARRRLSRKARYQPSL
FT                 FSYPSEKSHRRFLAFAYANRVYQMTSLPFGLSTAPIAFSSVSKWVASFLRE
FT                 KGLRVLVYLDDFLFAHQNPNTLERHMRYAVEILQSMGWCVNLEKSVLRATQ
FT                 EIKFLGIIWNVSTNQKTLPKDKIDRISRDLNQVLETKQWSWESGTALIGRL
FT                 GFASLVTPLGRLYTRHMQRAARKLSQDRPGKRVAVSSQAIQEARWWAQNIR
FT                 NPGRIFVPEPTMFVSTDASNDGWGIQMSDHLLSGLWTEEQLKWHINRKELY
FT                 TVLVALQEFQEVVLGQSIMVQSDNRTVVSYLRNQGGTKSIALLEMTKEILV
FT                 LAQSLNATIHSFYLPGRYNSIADCLSRGKALPDWHIKSEITQKIFRKWGVP
FT                 QIDLFASDQSKVVPVYVSIDAKDTQALFVNAFSRTWNYELAWIFPPPPLVP
FT                 RVLQHLNKSSGTFLIVVPRWETVFWRSDLKHRALGAPYLIPNLIENLIDLS
FT                 TNLPPPKVENLYLEVWKIRGGRI"
FT   CDS           2897..5290
FT                 /product="DIRS-2_HeAr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="KESSKIPCVRLRESGLSNDIFTFRPVHCTNSLFQCQQ
FT                 VGSKFSERKGSSRSSLLGRLPICTPKPKHAGEAHALCSRNFTEHGLVCQSR
FT                 KIRAKGHTGNKISGNYLECIDKPKDASKRQDRPDLKRSQSSLRNKAVVMGI
FT                 RHGIDRKARVRITCDPSRKTLHQAYAKSGKKTVTRPAREEGGSEFTGYSGS
FT                 SLVGSKYQKSRKDLCTGTDDVCEHRCLQRRLGHSDERPPPFRSVDRRAIKM
FT                 AYQQKGTLHSLSSFAGVPRGSSRSINNGSVRQQDSGVVFAKPGWNQVYRTA
FT                 RNDKRNLGLSSEFKCNHSLVLPARPLQFNRRLLIQRKSPTRLAHQKRDHTE
FT                 DISKMGSSSDRSLRLRPIESSTGLCLDRCKGHTSSLRECVQPNLELRTGVD
FT                 FPPSTTCTSGTPTSEQVLRNISDRGTSMGDSVLEKRPQTQSPGCPVPDTEL
FT                 NREPNRLIHEPSSAEGRKSLFGGLEDTGWADLVAGLDQADVNLIQSAWRDS
FT                 TWRTYESAWKQWVSWCRQNGRKPNSPRPLDVAAYLGSLSRVRKLAPSTIMV
FT                 HKSVILTFADPTQEKQLGNHPVVAAMLKAIKIQKCMSAVPKTQIWNIQDLF
FT                 QWLKSNIPDKESIFQVSRHVALLLLLASGRRIHDLTLLMIDDQHCERSDSS
FT                 ITFWPRFGSKTDNDRNRQSGWHLTCSGDMDLSLVKWINCLIDVTNSRRRAR
FT                 EGLNNLFITTRGKVKAASRTVIAGWLKAPFKDIGIDCSPGSVRSAVASNDF
FT                 QNNVPLDDILKRGNWRGSTNFFKHYCKSVEQPRGRNVNVLNNSFNAV"
XX
SQ   Sequence 6029 BP; 1726 A; 1376 C; 1444 G; 1483 T; 0 other;
     tatttcagtt ctgtgccttc ggcttgacct ttcggagatt acctacctta cctagagtac        60
     acacatgctt gctacttacg tccattcatg atagtgtgag ctgcgggcgg gcacagcgac       120
     gaccgcgcgg ggagagaggc ggcggcaggc gcgcgattgt aactcgaacg cgctctcgtc       180
     agtacgctat ctttattcta gcgtgcgcac gtattgctac agtgtaaccg ttatattgtg       240
     gtgtaacgtt gttgtaacgt ttgtgtaaga aaatatatat aacggtaagt tattcattat       300
     tttgttttgt gtgaattgtg tgttttaggt gcgggccaac tgtgaacaag aatgctgagg       360
     tctaagtgct taattttgca tctgcaattt tattagagcc aataaaatgt ttgtcggaca       420
     taccatccac aaactgcgac cgatataagc gatacgttgg caagccagcc actatcgtac       480
     ctacgggtcg cgctgcgagt tgcatgtttt gtttacataa acattgcggc ccaaaacttg       540
     ggcggcgcgg ctcaactttt ggtcggcgcg gctcaccatt tgagcggcgc ggctcaccat       600
     ttgagcggcg cggctcacca tttgagcggc gcggctcact atttgagcgg cgcgcggctc       660
     accatttgag cggtgcggct cgatatttga ccggcgcggc tcaaggttcg agccgcgcgg       720
     cccttaatct aggcgacgcc gcccaacatt tggatggcgc ggctcgatat ttgagcggcg       780
     cgccccgcgc cttgaaccgc tccccaactt gtgagcactc agtgaacttt ttcactttgc       840
     ttcagatgac ccagcttgga ggagtggtga ctctgggtga acttttggac gagcatgccg       900
     aagcggagga agagaacgtg atcttggaac gggtgaaagt tttggctcaa gagcatctcc       960
     ccgatggttg gacgaactgg gaggtgacca cggcaacgaa agaggaagtc tttggggaga      1020
     aagtcgaccc aaatatacta aacaaactcg tagttgcttt gcctaccgta gggttagttc      1080
     gtgcctttat accggaggcg gatcacctgt ccgaaaaaag gtatagggaa attcggcaca      1140
     agatactaga ctgggcattt acacgtgccc ttattatagg acctcctgcc atctccaacc      1200
     gcatccgcgg atctgcggcg cgcacggaat acgtgaaaca gtcggttgct gcgcttatgc      1260
     ctcttctcca cacaagagcg gagacagata aaatactctc aggctgtctt tcggagacag      1320
     aagagaccag tcgaaagagg aggtcgacgt ctcgggtcaa agagcccgcg acacgtcgac      1380
     ctaggcttga gtctccgccg ttctctactg ggacgtcact tcaggaagaa aggttttgtg      1440
     cattagagca gaaaatggaa atgctcctgg agatggtcac tcaaagcaga ggcagaaaca      1500
     aagattcgga ctctgattct gacaaggaaa acgatttttc cgatggcgag gaagaagtaa      1560
     gttcggacgc ctcggacgcc ccatcgtgga aagcccctac ctggggccca tatccaaacg      1620
     agcaagacga gcgaaacgaa aaggagcttg agtttcgacc cacgactaaa gaagcagatc      1680
     ctcttgttcc ggagccgtcg tcgcaagcca aaaaggaagg cattgaatgt caaagactgg      1740
     gcactgatag ctggaatcgc atcagataca aggacgtaga gaagcactta cacgccgctt      1800
     cgccatttag cccgctaaaa gtaaatacag aactgggtac tttagcctcg cggctctctc      1860
     cgtgggtgac gaggcaagaa ggaattctag gcacaatcac acacggattg ttgctccagc      1920
     gcaaggcgct agcagacggg ctcaatgcca taattaaaaa atgcccagac atcagcacgg      1980
     acttgagacg gttggtggag gcagaggact ctaagttcaa attagtgtca gatcaactgc      2040
     tacaatatgt ttgcgctaat agggctgaaa ccattgaggt tcgtagaaaa actttcaggc      2100
     ctaaaaatga cgtcctcacc agcgccctca acaacatacc tccttcgcca acccacctgt      2160
     ttgatgaaaa actatttagc gcgtttatta aagacaacgg tggcacatcg ggaatttttg      2220
     cctcatctaa tttaaataaa aaagaaacta ttcattcgtt tcggaagaac tcatttcgca      2280
     aagcatcttc gcatgcttcc aaaagcaaac aaccgactgg tcgcggtcac tcttcagcag      2340
     cgaccaccac cacgtctact cgcagtgcaa actaccgccg aagcggaaac tctaaggcac      2400
     caaataagca tcccgatcga cacggaaagg ataagaaatt acaaagaggt cgtaagtact      2460
     gacaattttc acgggggaca gttggagaaa tttcaagctc ggtggcagga gttaggagct      2520
     ccaaagaaga ttttaaaaat tattacaggc tatacaatac cctttgcagc aaaaccacct      2580
     tcgattccat tgcgcgaaaa tttaggaagg ttttccacaa acctgtcccc tgctatgtcc      2640
     aaggagatag agatattgct caagtcaggt gtggtagaga attgcgaggt tgcgaacggg      2700
     ttcctatcaa gaatatttct aatacccaag agaaacggaa agctacggca aatcttcgat      2760
     ttacgacgct tgaaccaatt tctcaaaccc ccgaaatttc gtctgataaa tcaaagtcaa      2820
     gttccaaatt ttatgcaaga aggagattat ctcggaaagc tagatatcag ccaagcctat      2880
     tttcatatcc cagtgaaaag agtcatcgaa gattccttgc gttcgcttac gcgaatcggg      2940
     tttatcaaat gacatcttta cctttcggcc tgtccactgc accaatagcc ttttccagtg      3000
     tcagcaagtg ggtagcaagt tttctgagag aaaagggtct tcgcgttcta gtctacttgg      3060
     acgacttcct atttgcacac caaaacccaa acacgctgga gaggcacatg cgttatgcag      3120
     tagaaatttt acagagcatg ggttggtgtg tcaatctaga aaaatccgtg ctaagggcca      3180
     cacaggaaat aaaatttctg ggaattattt ggaatgtatc gacaaaccaa aagacgcttc      3240
     caaaagacaa gatcgaccgg atctcaagag atctcaatca agtcttagaa acaaagcagt      3300
     ggtcatggga atccggcacg gcattgatcg gaaggctagg gttcgcatca cttgtgaccc      3360
     ctctaggaag actttacacc aggcatatgc aaagagcggc aagaaaactg tcacaagacc      3420
     ggcccgggaa gagggtggca gtgagttcac aggctattca ggaagctcgt tggtgggctc      3480
     aaaatatcag aaatcccgga aggatctttg taccggaacc gacgatgttt gtgagcacag      3540
     atgcctccaa cgacggctgg ggcattcaga tgagcgacca cctcctttca ggtctgtgga      3600
     cagaagagca attaaaatgg catatcaaca gaaaggaact ttacacagtc ttagtagctt      3660
     tgcaggagtt ccaagaggta gttctaggtc aatcaataat ggttcagtca gacaacagga      3720
     cagtggtgtc gtatttgcga aaccagggtg gaaccaagtc tatcgcactg ctagaaatga      3780
     caaaagaaat cttggtctta gctcagagtt taaatgcaac cattcactcg ttttacctgc      3840
     ccggccgcta caattcaatc gccgactgct tatccagagg aaaagcccta cccgattggc      3900
     acatcaaaag cgagatcaca cagaagatat ttcgaaaatg gggagttcct cagatagatc      3960
     tcttcgcctc agaccaatcg aaagtagtac cggtctatgt ctcgatagat gcaaaggaca      4020
     cacaagctct cttcgtgaat gcgttcagcc gaacttggaa ctacgaactg gcgtggattt      4080
     tcccccctcc accacttgta cctcgggtac tccaacatct gaacaagtcc tccggaacat      4140
     ttctgatcgt ggtacctcga tgggagacag tgttttggag aagcgacctc aaacacagag      4200
     ccctgggtgc cccgtacctg ataccgaact taatagagaa cctaatcgac ttatccacga      4260
     accttcctcc gccgaaggta gaaaatctct atttggaggt ctggaagata cggggtgggc      4320
     ggatttagta gctggtttag accaagctga cgttaacctg atacagtcag catggcgcga      4380
     ttcgacttgg cgtacctacg agtccgcatg gaagcaatgg gtctcgtggt gtagacaaaa      4440
     tgggagaaaa cctaatagtc ctcgacctct tgatgttgct gcttacctgg gttccctttc      4500
     acgagtacgg aaattagccc catcaacaat tatggttcac aagtctgtaa tccttacttt      4560
     tgccgaccct actcaagaaa aacaactagg aaatcatcct gtagtggctg caatgctcaa      4620
     agccataaaa attcaaaaat gtatgtcagc agtaccaaag actcagatct ggaacattca      4680
     agacttattt cagtggctaa aatcgaatat acctgataag gaaagtattt ttcaagtatc      4740
     tcgtcacgtg gcgcttcttc tattgctagc ttcaggtcga cgtatacatg acctcaccct      4800
     ccttatgata gacgaccagc attgtgagag atcagattcc tcaataacgt tttggccaag      4860
     atttggctca aaaacagata atgacaggaa ccgtcaatcc ggatggcatc taacatgctc      4920
     aggcgacatg gatttgagtt tagtaaaatg gataaattgc ttaatagacg tgactaacag      4980
     tagaaggagg gcacgagagg gcttaaataa tttgtttatt acaacgcgag ggaaggttaa      5040
     agcagcttcc agaaccgtta ttgcgggctg gttgaaggca ccctttaagg atattggcat      5100
     agactgcagc ccaggctcgg ttcgatcagc tgtagcttct aatgacttcc agaacaacgt      5160
     accgctggat gatatcttga aacgagggaa ctggagaggc tcgacaaatt ttttcaaaca      5220
     ctactgtaaa tcagtagagc agcctcgagg tagaaatgtt aatgttctta ataattcctt      5280
     taatgcagtg taagactgaa catttgatct cattaaagat ctcaatcttt acctaatgtt      5340
     tatttattag atataagaaa gggtcaggac cctgttatgt ttaaaatgat aaggtttaag      5400
     agtcagttta tatttgctaa attgttaaac tatgatgaag aataaagatt ttatgtttga      5460
     taaagaagaa ttagttataa aactgtatta atagcatttt atcgttaaaa gatacgtttg      5520
     ctgtgatcgt acaagacttg aactgatttt gtacttactt gtataacagc cattgattct      5580
     aattttaata aaacagcttg attttgaaga tgagaaccta aggttttatt tctcaccttt      5640
     atcacagtac gcttaatagc accggcagat gatagacacg tctccgaaag gtcaagccga      5700
     aggcacagaa ctgaaatatc accgttttcc accccgaagg gaagaaaacg attatttcag      5760
     gtcttgccga ggcttgacct gagcaagctc ttgccggctt tcggagatag gtactgacga      5820
     gagcgcgttc gagttacaat cgcgcgcctg ccgccgcctc tctccccgcg cggtcgtcgc      5880
     tgtgcccgcc cgcagctcac actatcatga atggacgtaa gtagcaagca tgtgtgtact      5940
     ctaggtaagg taggtaatct ccgaaaggtc aagcctcggc aagacctgaa ataatcgttt      6000
     tcttcccttc ggggtggaaa acggtgata                                        6029
//
ID   DIRS-2_HSal repbase;    DNA;    INV; 4958 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 19.04, Created)
DT   11-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DIRS retrotransposons in Harpegnathos saltator, consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4958
RA   Bao W. and Jurka J.;
RT   "DIRS retrotransposons from the Harpegnathos saltator genomes.";
RL   Repbase Reports 14(4), 803-803 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           466..1425
FT                 /product="DIRS-2_HSal_1p"
FT                 /translation="MDYWKHRRSPAPSEVSEDRERPVSLLPPLDHTLSSEK
FT                 SGKASAEIYVEQRAFRGQDGDPGMSPYWLLATNSDTKGDINICSLSTAFPV
FT                 HSPXLLGQVSSPPNNVSFSTPVITATLEENPPDIEKTESNGLASELFGEQS
FT                 RPPVVATWSQIILNTTKSEVRTGLKEELHNTLLTKYELKEDLTSLGPPRVN
FT                 KEILPNLSETVTARDRHHIKLQTQVGASLNAFGAGISELSKLEYLQSSPEA
FT                 RAAVTKIAEGIRLLADHQFRLSQMRRAFIVSSLNFLDKTVSDSAPIGDCLF
FT                 GSNFAEEVNTAQSVERVARKMARNLLHH"
FT   CDS           join(1973..3538,3448..4116,4008..4445)
FT                 /product="DIRS-2_HSal_2p"
FT                 /translation="MEDWRTVIRLMTLNCRXASIDLEDAYLSVPVHPSHXK
FT                 FLRFQWQGICYEFTSLPFGPSTAPYIFTKIVXPVVRVLRERGLHSXVYLDD
FT                 FLLLGDSTEXCQRNVXXSLAFLTSLGFLVNYRKSQLRPSPRCRYLGFIFDS
FT                 AQQSIAIPPDRREXLLRLTHNISQRTHCSIKEFASMIGSLVSVCPAVSYGL
FT                 LYTKRFEREKYLALGTHSGXYKAQMILPAYLKXDFDWWLRIFSDVHQFNVI
FT                 RSXPYECEIFSDASLTGWGASCGMQRTHGWWSIEDRALHINALELKAAFHA
FT                 LKCFALHLHDCRILLRIDNTTAISYINRFGSVQYPLLSDLARDMWKWCEKR
FT                 HILLFASYIASIDNVIADAESRISDTDTEWSLSEQAFRAVEGXFGPFDIDL
FT                 FASIINAKLDLYVSWFPDPGSWAIDAFTLSWQSLYFYAFPPFIIIPRILRK
FT                 IIDDEATGVLIVPWWPSQSWFPMFTRLLQLDPLILPPXDSLLSSPFRNRHP
FT                 EWRTLSLAAGXLSGRPSGLKRSLQQREQTSGVANPFPGGRXVIREAFRSQA
FT                 VPSAALDIVLASLSPATIKQYERSLRNWWIFCQESQISPFSPRVDQVLEFL
FT                 FQKLQRVGSYSTPNTVRSTVSLISTTGMGNHPLIKRFCKGVSVLKPQTPRY
FT                 DFIWDPAPVIAKLATIFPHDSLSLTTITKKLILLLALGSGQRAQTLATIKI
FT                 SQIFLSPDKLIIRIPGRLKTSVPGRAQPVLVFSRFLHRSSVSRRCTHHPNP
FT                 GSPQNVSSRSCATGTCFLPFSSSQLCIASLLEQYMHLTKNLRSVDSDSLFI
FT                 SCVKPYKAVSVQTVCRWIRARLEDCGVQTDLFSAHSTRHTATSLAARKGVA
FT                 IDLIKRAAGWSGESRVFAQFYNRPIINAEDFSNFVLLM"
XX
SQ   Sequence 4958 BP; 1167 A; 1278 C; 1076 G; 1405 T; 32 other;
     ttatgccctc tggtctcgtc cggatggatt aactatgtag ttatgctttc ttacctacat        60
     cgtcaacaga gttcaaataa aaaaaggcgc ccccgcgcct tgtcgcatcc tgcctgcccc       120
     gtggcgctgc gcgcgctctg tcgcgccctg cgccgccacg cgcgctgtaa cttcattgtg       180
     ttttctgttc ttacagagtc aagtgagttc aagtttccgc gcttatttta tacttttcca       240
     attttctcga catgatgaag catcggaaag accgatcccc acgttcttca cgaaagagcc       300
     gacgtaagca ccgggagcgg tcctctagca ggcgatcagg ttctcgatcg ctctcaagat       360
     cgcgacttaa cctctctcgc cagtcgccgc accgacttga gagagagact ttcagtgacg       420
     cgttcaccat cttgtgaccg aatcctacac gcactaagcg agtttatgga ctattggaag       480
     catcggaggt ccccggcacc cagcgaggtg tcggaggaca gggagagacc agtgagtcta       540
     cttccgccac tagatcatac gttgtcctcg gagaagtccg gtaaggcttc tgccgagata       600
     tacgtagagc agagggcctt caggggccag gatggcgatc caggtatgtc cccgtattgg       660
     cttctcgcca cgaatagcga cacaaaaggg gacataaaca tctgctctct ttccaccgca       720
     tttccagtac actctccttt kcttttagga caggtctcat ctccacctaa taatgtttcc       780
     ttctctacac cagtgatcac agcaacgctt gaagaaaacc cgcctgatat agagaagact       840
     gagtcgaatg gtcttgcttc cgaattattc ggagaacaat ctcgcccacc tgttgtagct       900
     acttggtcgc aaattatttt aaacacgacc aagtcagagg tccgcacagg tcttaaagaa       960
     gaattgcaca acaccctcct tactaaatac gagctgaaag aagacctgac atccctcggc      1020
     cctcctcgtg taaataagga gatccttcct aacctgagtg aaacggttac tgcwcgcgac      1080
     aggcatcata taaagttgca gactcaggtg ggagcttccc tcaacgcctt tggtgctgga      1140
     atttccgagc tctcaaagct tgagtatctc cagtcttcac cggaagctag agctgctgtt      1200
     actaagatcg ctgaaggaat acgcttactg gcagaccacc agtttcgttt atcccagatg      1260
     agacgggcct tcatcgtgtc atctttgaat tttttagata aaaccgtctc cgactcagct      1320
     cctatcggcg attgcctttt tgggagcaac tttgccgaag aggtgaatac ggctcaatcc      1380
     gttgagagag tggctcggaa aatggckcga aacctcctcc accactaggg ccgtcaactc      1440
     gacgaccgct caatcaaawt cagcaaccwa aatcgcagcc ccctcctcct cgkgaggagc      1500
     gcgggcaggg aaacgcgaaa acccctctac gcaagattcc tacggctcat cactcgagga      1560
     ggggttttct tcaagcgagc cgmttcagga gatcatcctc ccgatcgaga catcgaccca      1620
     accagtagct ccagcaamgt cagcaggccg cctagtctac tttgcggatc gttggcgaac      1680
     aattacgtcc gactcccagg tacttgcagc aataaaaggt tacaggattc cctttacgaa      1740
     tctacctcct gcccgtcctt ctttgaagga gccatcactg acgcggcaag aggcggaatg      1800
     ttgcacggag gaaatcaaac gtcwatgtca aaaaggggca gtagtgtccg tcaaaccgtc      1860
     tgcagaccaa tttctgtctt ccttcttcct cgtcaggaaa ccttccggag gggcgcgatt      1920
     tattttaaat ctccgtgact taaattctca cgtctcccct ccgcatttca agatggagga      1980
     ttggcgaacg gtaattcgtc tcatgacctt aaactgcagg wtggcatcaa ttgatctcga      2040
     ggatgcatat ttgtcagttc cggtgcaccc ttcgcataka aagtttctcc gktttcaatg      2100
     gcagggcatc tgttacgaat ttacatcgct gcccttcggc ccgtcaaccg caccttatat      2160
     ttttacaaaa attgttmgtc ccgtggtcag agtgctacga gaaaggggtt tgcactcgkt      2220
     tgtatatcta gacgattttc tmttattagg tgattccacc gaggaktgcc agagaaacgt      2280
     cgakktttct ctagctttcc tcacctctct cggttttctg gtgaactata ggaagtccca      2340
     gcttagaccc tcacctcgat gccgatattt aggtttcatt tttgattcag ctcaacaatc      2400
     aatcgctatt ccgcctgaca gacgagaaag sctcctkagg ctgacacaca atatatctca      2460
     gcgaacccac tgctckatca aggaatttgc gagcatgatc ggatcgctkg tatcggtttg      2520
     tccggcagtt tcgtatggtt tgttatatac taaaagattt gaacgcgaaa aatatttagc      2580
     tctwggtacc cactccggaa awtataaagc acaaatgata ctgcccgcat atttaaaaga      2640
     sgattttgat tggtggcttc gtatcttctc cgacgttcac cagtttaatg ttattcgttc      2700
     tascccctac gaatgcgaga ttttctcgga tgcatcttta acgggctggg gagcctcttg      2760
     tggaatgcaa cgcacgcatg gctggtggtc cattgaggat agagcgcttc atattaatgc      2820
     acttgagtta aaggccgcgt tccatgcgtt aaaatgtttt gccttacatc ttcatgactg      2880
     ccggatccta cttcgtattg acaacaccac agctatttcc tatatcaata gatttggctc      2940
     agttcagtac cctctcttat ctgacttagc tcgagatatg tggaaatggt gtgagaaacg      3000
     ccatattctt ctgtttgctt cwtatattgc ctctatcgac aatgttattg csgatgctga      3060
     gtcgcgaatt tcggatacgg acactgagtg gtctttgtca gagcaagcgt tccgagcagt      3120
     tgaaggcgkt tttggtcctt ttgacatcga tttatttgcg tctattatta acgccaagtt      3180
     agacctttac gtctcctggt tcccagaccc aggctcatgg gcaattgatg cctttactct      3240
     atcgtggcaa agcctatatt tttacgcatt tcctccattc attattattc ctcggattct      3300
     acgcaaaata atagacgacg aggctacagg ggttctaatt gtcccttggt ggccctcaca      3360
     atcatggttt cckatgttca ctcgtctact gcaactcgat cctctcattc tacctcctwc      3420
     tgattctcta ttatcttctc cttttaggaa cagacatccg gagtggcgaa ccctttccct      3480
     ggcggcaggc akgttatcag ggaggccttc aggtctcaag cggtcccttc agcagcgcta      3540
     gatattgtcc tcgcctcact atccccagct acgattaaac aatacgagcg ctcactgcgt      3600
     aattggtgga ttttttgtca agagtcccaa atctctccgt tttctccgag agttgaccag      3660
     gttctagaat ttctatttca gaaattacag cgtgtcgggt cttattcgac tcccaatact      3720
     gttcgttcca cggtctcgct tatttctacg acggggatgg gtaaccatcc cttaattaag      3780
     cgtttttgta aaggtgtcag tgttctaaaa ccgcaaacac cccggtatga ttttatatgg      3840
     gaccctgctc ctgtgattgc aaagctagct acaatatttc cgcatgattc tctatcccta      3900
     acgaccatca ctaagaaact aatccttttg ttagcgttag gttccggtca gcgtgctcag      3960
     acccttgcga ccattaaaat ttcacaaatt tttctatccc cggataaact catcatccga      4020
     atcccgggtc gcctcaaaac gtcagttccc ggtcgtgcgc aaccggtact tgttttctcc      4080
     cgttttcttc atcgcagctc tgtatcgcgt cgttgttaga acaatatatg cacttaacca      4140
     agaacctgcg ctcggttgat agcgattctt tatttatttc ttgtgtcaaa ccgtacaagg      4200
     cagtcagcgt tcaaacggtg tgccggtgga ttcgcgcgag gctcgaagac tgtggtgtac      4260
     aaactgattt gttttctgcc cacagtactc gtcatacagc tacctcgcta gccgcgcgaa      4320
     aaggtgttgc tatcgacctg attaaacggg ccgcaggttg gtcgggcgaa tctcgcgtat      4380
     ttgcgcaatt ctataatcgt cctattatca atgcagagga ctttagcaac tttgtactct      4440
     taatgtaatt ttctctggaa cattttccag ttctgcctta tatggtttct gtgtttcttg      4500
     agtaatttct cagttttgcc tttttccgct gtactgtatc agctctgtac tctttgttta      4560
     ttttcagttt attccatata tattgataca atgaataaaa caagtttttt gttcataacg      4620
     gcaaatcgta ttttaaacaa ctacatagtt actccatctg gacgagaccg gagggcataa      4680
     ttgtaggatt gaacgaactt gtagagtgaa gttcgatctt gattatgccc ctggtctcgt      4740
     ccggatggat taactatgta gttatgcttt cttacctaca ccgtcaacag agttcaaatc      4800
     aaaaacggcg cccccgcgcc ttgtcgcatc ctgcctgccc cgtggcgctg cgcgcgctct      4860
     gtcgcgccct gcgtcgccac gcgcgctgta acttcattaa attcaaagtg ttaaggcaaa      4920
     tcggtagttc ctggatagcg cggggggggt aaaaagct                              4958
//
ID   DIRS-2_MeUr repbase;    DNA;    INV; 5013 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the bear giant-skipper genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_MeUr.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-5013
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 2806-2806 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 149/148-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           708..1646
FT                 /product="DIRS-2_MeUr_1p"
FT                 /translation="MAMVESEPIAPELELAPEQELALEPELVPESQVVFEA
FT                 EDTPAAGQANPSDDISQSELDSELLLALGDTSEDVPNFGEKIHNSLSQRWT
FT                 PILKKGLLKEVKTKLTNDYPVPDNCRLLKAPTLNPEISAAVMEVVRNRDKS
FT                 IQAKQDQLGHGIAAISKAISLLLIGDEKVRAIKILSDGCRLLSDLHYTETQ
FT                 LRTKLITPCLQKSILCVIENQNRDETLFGVDLPEKIKSSKAIEKQGHQLKK
FT                 VTNRTSTHTAQPAARSRYQENWQGPPRYPSANRGGGEGHIGLLQPSIAAHQ
FT                 QRRLRSDFLSIRTNNVLLVNN"
FT   CDS           1435..3537
FT                 /product="DIRS-2_MeUr_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 DNA N-6-adenine-methyltransferase (Dam)."
FT                 /translation="RTERQHTQLNLQLDLATRKTGRALLVTPRQTGGAGRV
FT                 ISAYSNPVSPHTNNGDSDPISSQSEQTTCSSSIIEVHAGRLQYFYDCWLKI
FT                 TSNKIVLKWIKNGYSIPLGCRIAQYHVPNYNSLSNKEINDINLAIHNLIKL
FT                 GAISECKPQRDQFISKIFLAPKANGTYRLILNLKQFNKYVSNLHFKMEDFR
FT                 TVSKMIQPNMFMATIDLKESYLLVPINKNQRKYLRFYFCNKTYEFNGMPYG
FT                 LCSAPRTFTKIMKEVMTYLRRQGFSSVIYLDDILCLGPTYDKCLRNVNETL
FT                 KVLKCLGFVVNSQKSSLKPNQNIKFLGFLFNSIEMTMSLPFEKRYHIKSLA
FT                 EKYYSLHSCTIRDFSRFIGVLTAACPAVRYSWLYTKRLERQKYLALQKSRS
FT                 YDSKFKLSPEVLPDLKWWFEHIQTSIWPLQVIKYDLEIFTDASGSGWGAFC
FT                 NGKRANGKWNDKELKLHIDYLELLAVFFGLKCFTRDIFNVNILLRVDNITA
FT                 LSYVNRMGGIQYPHLNDLTRAIWQWCEKRNIWLTAAYINTKDNKEADEESR
FT                 KINSDIEWSLSNSAFQKIVDRFGKPKIDLFASRINAKCNKYVSWRPDPNAT
FT                 AVDAFTILWKSMFYAFPPVSLILRCLQKIISDKADGILVFPYWQSQPWFPL
FT                 LKTMIVSDIMFFDTNKDMLMSCSRNPQFQHFTLGVAKLSGKHSPNAELRGP
FT                 L"
FT   CDS           3429..4343
FT                 /product="DIRS-2_MeUr_3p"
FT                 /translation="GHAHVLFQESPISTFYPGCGQALREAFAKRGAPGASL
FT                 EIMLASLSKNTLAQYNVTFKLWWKYCSMNHINPYIGSISSVMTFLTNQFNQ
FT                 GSAYGTLNSHRSALSLLLGNELGSEEYIKRLLKGAFRLRPSAPKYTFTWDP
FT                 QIVLNYIITWGPNENLSLDKLTKKLVVLLALCTAHRVQTLSLIKIKDIRMN
FT                 LNEIQISVKDLIKTSSIGRDQPLLIIPFFQENKNICPASCIQHYLERTKEI
FT                 RPNNVLNVLLTVKRPFHAASSQTISRWIKQVMAKSGMISVCSVHTALDTPL
FT                 PRRRTLPASRLTP"
XX
SQ   Sequence 5013 BP; 1696 A; 936 C; 882 G; 1499 T; 0 other;
     aattatattt cattcgcttt attcttcaga tataaataaa caatgtagtt tctcttatct        60
     tactggcaac tttcgcattt ttagagggta tatctaaact aaatttattc cacctaccgt       120
     ttagattacc ttgttctggt caacagccgc agttctcatt cttttatttt gcgcggcaac       180
     gaacacacgt tctcttagca aaatcaattt gtttaaagta ttgtgttagc atgcctaagc       240
     gaaaacagag atcagttgaa tactatgaag ctaaaataag aaaattgcaa caaaagactg       300
     atagaagtcg ccaaattagt gaatcctctt atgcggacgc tgaaagaaac caaggtaaat       360
     agaaattatt ttatttcaaa taatattgtg tatctacaag tgttaaatac gcatctctaa       420
     gctaacctaa accaaatatt ggtagttagc atgatgttta acaattgccc ctaagtttaa       480
     caaaagttaa acaggcgggt atgttaatgt atgaaaaagc tattattatt tactaattac       540
     atacatcccc cttttaatta tttttaattc gattcaccta aaaagttagc gtgatatgta       600
     aaaaaaaaaa ttacctccag taggtaatat taaatttgac actaattcat acaatttcgt       660
     tttgtggtgc agatgtcggc gcctatgaag gtgatactaa taacacaatg gcaatggtcg       720
     aatccgaacc cattgctccg gagctcgagc tagcacctga gcaggaatta gcacttgagc       780
     ccgagttggt tcctgagtcc caagtggtat tcgaggcgga agatacaccc gctgctggtc       840
     aagcaaatcc atctgacgat atatcgcaat cagagcttga ttcagaactt ttgttagctt       900
     taggagatac tagcgaagat gtaccaaact tcggtgaaaa aattcataac agtctgtcac       960
     aacggtggac accgatatta aaaaagggac ttctcaaaga agtaaaaaca aaacttacta      1020
     atgactaccc tgtgccggat aactgtaggt tgctgaaagc accaacacta aacccggaaa      1080
     tatcagcggc tgtcatggaa gttgtcagaa accgcgataa gagtatccaa gctaaacagg      1140
     accaactagg tcatggtata gctgcgatta gcaaagctat ttctttgttg cttattggcg      1200
     atgaaaaggt tcgggcaatt aaaatacttt ctgatggctg caggttgctc agtgacttac      1260
     attatacaga aactcagctg agaactaagc tcataacacc ttgccttcaa aaatctattt      1320
     tatgtgtaat tgaaaatcaa aacagagacg aaactctatt tggtgtcgat ttaccagaaa      1380
     aaattaaatc ttcaaaagcc atagagaaac aaggccatca attaaaaaag gtgacgaaca      1440
     gaacgtcaac acacacagct caacctgcag ctagatctcg ctaccaggaa aactggcagg      1500
     gccctcctcg ttacccctcg gcaaacaggg ggggcgggga gggtcatatc ggcctactcc      1560
     aacccagtat cgccgcacac caacaacggc gactccgatc cgatttcctc tcaatcagaa      1620
     caaacaacgt gctcctcgtc aataattgag gtacacgcgg gtagattaca atatttttac      1680
     gattgctggt taaagattac aagtaacaaa atagtactaa aatggattaa gaacggatat      1740
     agtataccgt taggttgtag gattgctcaa tatcacgttc caaattataa ttccttgtcg      1800
     aataaagaaa ttaatgacat taacttggcc attcataatt taattaaatt aggtgctatt      1860
     tctgagtgta aaccacaacg agaccaattt atatctaaaa tatttttagc tcctaaggca      1920
     aatggcacct acagattaat tttgaattta aagcaattca ataaatatgt ctccaatctc      1980
     cactttaaaa tggaagactt caggactgtt tcaaagatga ttcaacctaa catgttcatg      2040
     gccacaatcg atttaaaaga atcatacctt ttggtaccta taaataaaaa tcaaagaaaa      2100
     tatttaagat tttacttttg taataagaca tatgaattta acggtatgcc gtacggatta      2160
     tgctctgcac ctagaacctt cactaaaatc atgaaagaag tcatgactta cctgcgacgt      2220
     caaggatttt cttccgttat ttatcttgat gatattttat gtctaggccc tacgtacgat      2280
     aaatgtttac gaaacgtaaa tgaaacttta aaggttttga aatgtttagg ttttgtagtt      2340
     aactcccaaa aaagttcttt aaaaccaaat caaaacatta aattcctagg attcttattt      2400
     aattctatag aaatgacaat gtcattacct tttgaaaaac gttaccacat aaaatcgctt      2460
     gctgaaaaat attattcctt gcattcttgt accattagag atttttcacg tttcatagga      2520
     gtactaacag cagcttgtcc tgccgtacgt tatagctggc tgtacactaa acgacttgaa      2580
     cggcaaaagt atctagcttt acagaaatca cgtagttacg attcaaagtt caagctatct      2640
     cctgaagttt taccagattt gaaatggtgg tttgaacata ttcaaacttc aatatggcca      2700
     ctacaagtaa taaaatatga tttagagatt tttaccgatg catctgggtc tggttggggc      2760
     gcgttctgta atggaaaacg cgcaaatggt aaatggaacg ataaagaatt aaaattacat      2820
     attgactatc ttgagcttct agcagtattc tttggtttaa aatgtttcac tcgtgatatt      2880
     tttaatgtaa atattttatt acgagttgac aatataactg cactaagtta cgtgaaccgt      2940
     atgggtggta ttcaataccc tcatttaaac gatctgacta gggcaatttg gcagtggtgc      3000
     gagaaacgaa atatttggtt aacagctgcg tatattaata cgaaagacaa taaagaagca      3060
     gacgaagaat ccagaaaaat aaattctgat atagaatggt cattaagtaa ctccgcattt      3120
     cagaaaattg tggatcgttt tgggaaacca aaaatagatt tattcgcatc tcgaatcaat      3180
     gccaaatgta ataaatatgt atcctggaga ccagacccaa atgcaacggc tgtcgacgca      3240
     ttcaccattc tttggaaaag tatgttctat gcgtttcctc ccgtgtcgct aatattgcga      3300
     tgtttgcaaa aaattattag cgataaagca gatggaattc tagtttttcc ttattggcaa      3360
     tcccagcctt ggtttccatt attaaaaacc atgattgttt ctgatatcat gttctttgat      3420
     accaataagg acatgctcat gtcttgttcc aggaatcccc aatttcaaca ttttaccctg      3480
     ggtgtggcca agctctccgg gaagcattcg ccaaacgcgg agctccgggg gcctctttag      3540
     aaataatgtt agcttctctg tccaaaaata ctttagcaca gtacaacgta acatttaaat      3600
     tatggtggaa atattgcagt atgaatcata ttaatcccta tattggttct attagttcag      3660
     tgatgacttt tttgacaaat caattcaatc aagggtcagc ctacggaacc ctaaacagtc      3720
     accgttctgc cctcagttta cttctaggaa acgagcttgg atctgaagaa tacattaaaa      3780
     gattactaaa aggtgcattc agattgagac caagtgcacc aaagtataca tttacttggg      3840
     acccacagat tgttctaaat tatatcatca catggggtcc gaatgaaaat ttgtccctgg      3900
     ataaattaac caaaaaattg gttgttttat tggcattgtg tacagctcat agagtacaaa      3960
     cattatcgct tataaaaatt aaggatataa gaatgaattt gaatgaaatc cagatctcag      4020
     ttaaagacct gataaaaact tcatcaatcg gtcgagatca accgttacta atcataccat      4080
     tttttcaaga aaataaaaat atttgcccgg ctagttgtat ccaacattat ctggagcgca      4140
     ctaaagaaat tagacctaat aatgttctaa atgtcttatt aacagtaaag aggccttttc      4200
     atgcagcaag ctcacagact atcagccgct ggatcaagca ggtgatggcg aagagcggca      4260
     tgatatcagt ttgttcagtg cacacagcac tcgacacgcc gctacctcgg cggcgcacgc      4320
     tgccggcatc tcgcttgacg ccataaggaa atcagctggc tggacctcaa attcacaaac      4380
     ctttgcgaaa ttttataatc gtccgattat atctaatcaa gatacactcg tctctgcttt      4440
     attacgtcca gcaaattgtt cataagtttg attgagaatt aataattata ttatgtagct      4500
     ataatttatt gttagtaaaa caataaaacc aatattgatt cttatttagt tttattacaa      4560
     acggaagagc ataacgtctt caactgctat aagggtaatc atgaaatcga tataacaaaa      4620
     ttttggacta aaactctaaa catctacatt gtttatttat atctgaagaa taaagcgaat      4680
     gaaatataat agatgatcag acgaacttca tgaagtgaag ttcgatcact attatatgaa      4740
     ttcgctttat tcgaagatat aattaataac cctcccatcc cggtcccaaa aattttgtta      4800
     ccgtctctaa aacaatgaga actgcggctg ttgaccagaa caaggtaatc taaacggtag      4860
     gtggaataaa tttagtttag atataccctc taaaaatgcg aaagttgcca gtaagataag      4920
     agaaactaca ttgtttattt atatcttcga ataaagcgaa ttcatataat agtgatcgaa      4980
     cttcacttca tgaagttcgt ctgatcatct att                                   5013
//
ID   DIRS-2_MoPha repbase;    DNA;    INV; 4855 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the pharaoh ant genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_MoPha.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4855
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 650-650 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 173-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           259..1527
FT                 /product="DIRS-2_MoPha_1p"
FT                 /translation="MGKSSHNSRKRRRSSSGDRISSLEKKLSRLIDVLSHK
FT                 ENRASICPPPHCSSASPMHRDIQEIQGESFSEDWADVTVNNRSRSGSEXNF
FT                 LAAPASQEGPVDPHITGVYVIAGSVFAEYRRHNDTAFFRLSMISGYFSDAV
FT                 SNQAEEVEVSPTSSRANIVTLVDDPFPTLEEXNADALTKELFGSDREGVEE
FT                 TAWNDLVTLKWQDLTRKGLLAEQRDPLLRKFSPSDAISFLRAPKLNPECRA
FT                 ALKNNSIVKRDDFNCKDQDQMGVALCAFGEAISDFLKPEVQGTLSSEARLA
FT                 VAKVNDGAKILADLFYRFSLSRRAQILPALNLIAKNTADAIPADNFLFGAS
FT                 FGEEIKKATSMEKSSKDIVKTPLIVARKVQQPIKQPIQTSMKSGNFRAPTR
FT                 NSRPTTTRSAGANSSRRSSYRHRSHSRRR"
FT   CDS           1389..3146
FT                 /product="DIRS-2_MoPha_2p"
FT                 /note="reverse transcriptase, and ribonuclease H."
FT                 /translation="AANPDIYEVGKLPSPYTEFETNDDQECRGEQQPKVVI
FT                 SPQISLQEEVDEQEVHSAGRLSLFLSRWREITSDPVILESIAGYRLPFSHH
FT                 PPPQLTEPSVFLSRSEEQICSQEISRLCNKGAIEPVSDCEGQFLSSFFIIK
FT                 KHSGGWRFILNLKRLNKFIIAPHFKLEDWKTVIRLISPDDFLASIDLENAY
FT                 LLLPIHQEDRKFLRFRFKGQLFEFKALPFGLASAPYIFTKILKPVFYSLRE
FT                 KGFLSVTYLDDFLIIAPSYDQCLKNIFVTQDLLLSLGFKINERKSMLIPTK
FT                 SCRYLGFIFDTESFSISIPSDRRNKLLQATLTILGMKSCKIRFFASYIGSL
FT                 TSVCPAVQYGMLHTKILEREKFLALVAADENFDAQMSLPVSIREDLLWWKS
FT                 VFANSAHRNFIRSGVFSLEIFTDASLTGWGAVCGDARTHGFWSAEEKLNHI
FT                 NYLELLAIFHALRSFASHLKSCEILLRVDNATALSYVNRMGSIKFPHLSNL
FT                 ARKIWSWCADRDLFLYAAYIPSAQNFEADAESRVVSVDTEWSLEQGYFNRI
FT                 NSLFGQFDIDLFATTINAKCPRFISWLPDPLRKQLMLFP"
FT   CDS           3334..4356
FT                 /product="DIRS-2_MoPha_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="HVILSFQRFSPGMEQNFPGSREIIRQAFLTKGTPVSA
FT                 LEATLASISDSTVAQYAKPFKLWWQFCQQKRISCFSPPISLFLDFLSISLS
FT                 QVRSYSTLNTYRSAVSLLSSDEVGSHPLVKRFFRGVAILRPQRPRYDFIWD
FT                 PSPVVAHLASLYPHESLSLEVVSKKLVTLLALTTAQRLQTLASMKVSNISI
FT                 SNSLIIKVPARLKTSGIGRSQPLLIFKPFVAKPELCVFTLSKYYLELTREL
FT                 RQDSCDSFFIAFRSPYNAVSAQTLGRWVKAELNAAGIDTSIFSAHSTRHAS
FT                 TSLAASRGVSLDEIRRTAGWSRSSEIFARFYNRPIVEASTFQTTILNTV"
XX
SQ   Sequence 4855 BP; 1248 A; 1067 C; 1002 G; 1535 T; 3 other;
     aattatgcta cgtctcgtcc ggatggatgt attgtagtag cgttccgctg cactatcctc        60
     aacaggtata tttaaagata ttataaaaac attataatat tattaataaa aawctgaagg       120
     tggcgtgcat ggcgcacacg ccgcgtatgc cgcgctcgcg cttacgtatc cagggtcctt       180
     cattgttttc ctgttgtgcg attcctcgac atctattttt tatactctct cagttttatt       240
     aagttattaa ttcctaggat gggaaaatct tctcataata gtaggaagag gagaaggtca       300
     tcctctggtg atcgtatttc gagcctggag aaaaaattat cccgtcttat tgatgtttta       360
     tctcataagg agaatagagc gtcaatctgc cctccccccc attgctcttc cgcatctccg       420
     atgcatcggg atatccagga gattcaaggt gaatcttttt ccgaggactg ggctgacgtc       480
     accgttaata accgatcgag atccggatcg gaggkcaatt ttctggcagc gcctgcgagt       540
     caggaggggc cagtggatcc gcatattaca ggtgtgtacg tgattgctgg gtctgtattt       600
     gcggaataca ggcggcataa cgacacagcc ttttttcgat tgagcatgat atcagggtat       660
     ttttcagatg cggtaagtaa tcaggcggag gaggttgagg tatctcctac gtcctctcga       720
     gccaatattg ttaccctggt ggatgatcca tttcctaccc ttgaggaggw caatgcggat       780
     gcccttacaa aggaattatt tggttctgat cgggaaggag tagaggagac agcttggaac       840
     gacttggtca ctcttaagtg gcaggatctt actcggaaag gtcttttggc agaacaacga       900
     gacccgcttt taagaaaatt ctctccttcc gatgcgattt ccttccttag agcccccaag       960
     ctcaatccgg aatgtagagc ggccttgaag aacaactcga tagttaagcg agatgatttt      1020
     aactgcaagg atcaggatca gatgggcgtt gcgctatgcg ctttcggcga agcaatctcg      1080
     gattttctga aaccggaagt ccaaggcact cttagttccg aggcgcgttt ggcggtagcg      1140
     aaggtcaatg atggtgcgaa gatcctagca gacctttttt atcgtttctc cttgtccaga      1200
     agggcgcaga tcctgcctgc tttaaatctg atcgccaaaa atactgccga tgctatccct      1260
     gcggacaatt tcctgtttgg tgcctcattt ggtgaggaaa taaaaaaggc aacttcgatg      1320
     gaaaaatctt cgaaggacat cgtaaagacc cccttgatcg ttgcgcgaaa ggttcaacag      1380
     cctattaagc agccaatcca gacatctatg aagtcgggaa acttccgagc ccctacacgg      1440
     aattcgagac caacgacgac caggagtgca ggggcgaaca gcagccgaag gtcgtcatat      1500
     cgccacagat ctcactccag gaggaggtag acgaacagga ggtacattcg gctggcagac      1560
     tctctttatt tctttctcgc tggagagaaa ttacttctga tccagtaatt ttagaatcca      1620
     ttgcggggta taggctacct tttagtcacc atccgcctcc tcagcttaca gagccttctg      1680
     ttttcttatc tcggtctgaa gaacagattt gctctcaaga aatttcaagg ttgtgtaata      1740
     agggagcaat cgagccggtc tctgactgtg aaggtcaatt cttgtcttcg ttttttatta      1800
     ttaaaaagca ttcgggcggc tggagattta ttttaaactt gaaacgttta aataaattta      1860
     ttattgctcc gcattttaaa ctggaggatt ggaagacagt tatccgcctt atttccccag      1920
     acgattttct cgcgtccatc gacttagaga acgcttattt actgcttcca atccaccaag      1980
     aagatagaaa gttcttacga tttcgattta agggtcaact ttttgaattt aaagctctac      2040
     cctttggatt agcatctgcc ccttatattt ttacgaaaat tttaaaacca gttttttact      2100
     ctcttagaga gaagggcttt ctgtcagtta cttacttaga tgattttctt attatagcac      2160
     catcttacga tcaatgtttg aaaaatatct ttgtcacaca agacttactt ttatctttag      2220
     gttttaaaat caacgagcga aagagcatgc ttatcccaac gaagtcctgt cgataccttg      2280
     gttttatatt tgatacagaa tccttctcga tttcgatacc atcggacaga cgaaataaac      2340
     ttctccaggc gacacttact attttaggta tgaaatcctg caaaatccga ttttttgcca      2400
     gttacatcgg ttctttaaca tctgtttgcc cagcagtaca gtatggcatg ttacatacca      2460
     agatcctgga gagagaaaaa tttctagctc tcgtagctgc ggacgagaat tttgatgctc      2520
     agatgtctct tccagtttcg attagagaag accttctttg gtggaaatct gtttttgcga      2580
     actcagcgca tcgcaacttt attagatcag gcgttttcag tcttgaaatt tttacggacg      2640
     catccttaac aggctggggt gccgtttgtg gtgatgctcg gactcacggt ttttggtccg      2700
     cagaagaaaa actaaaccac atcaactacc tagaactttt agctattttt cacgctttaa      2760
     gatcctttgc gtctcaccta aaaagttgtg agatcttatt aagagtcgat aatgctaccg      2820
     ctctttcata cgtcaaccgc atgggctcga tcaagtttcc acatctctct aatctcgcta      2880
     gaaaaatctg gtcttggtgt gcagatcgag atttattctt atatgccgca tatatccctt      2940
     cagctcaaaa ctttgaggca gacgctgaat ctcgggttgt ctctgtagat actgaatggt      3000
     ctttagaaca gggctacttt aacagaatca attctctttt cggtcagttt gacattgatc      3060
     tttttgccac aactatcaac gcaaaatgcc ctcgttttat ttcttggctc ccagatcctc      3120
     tgcggaagca gttgatgctt tttccttgaa ctggagtggt ttttatttct atgctttccc      3180
     tccattcaat ttgattttaa gagttttacg caaaatcatc actgacagag cagagggggt      3240
     gatggtagtt ccttggtggc cggcccagcc ttggttccct ttatttaacc gtcttgtttc      3300
     tagtcctccg attcattttg tccctgacat taacatgtta tcctctcctt tcagagattt      3360
     tcacccggca tggagcagaa tttccctggc agccgcgaga ttatccgcca agccttttta      3420
     accaaaggta ctcctgtatc ggcgttggag gctacgctag cctcgatttc agattcgaca      3480
     gttgctcaat atgccaaacc ttttaagtta tggtggcaat tttgtcagca aaaacggatc      3540
     agctgcttct ctcctccaat ttcattattt cttgattttt tatccatttc tctatcccaa      3600
     gtaagatcat attccacgct gaatacatac agatcggctg tttctctgct ctcctctgac      3660
     gaggttggat ctcacccttt agtgaagaga tttttcagag gggttgcaat tttaagacct      3720
     caacgtccgc gttatgattt tatttgggat ccctctccgg ttgtcgcgca tttagcttcg      3780
     ttataccctc atgaaagtct ttcgctcgaa gttgtgtcta aaaaattagt aacgcttttg      3840
     gctcttacta ctgcgcagag attgcaaact ctcgcatcca tgaaagtttc taatatttct      3900
     atttcgaatt cattaattat taaagttcca gcaagactta agacttccgg aatcggaaga      3960
     tctcagccgt tacttatttt taagccattt gttgctaagc cagaactatg cgtttttacc      4020
     ttatcgaaat actaccttga gctcactcga gagcttcgac aagatagttg tgattcattt      4080
     tttattgctt ttcgttcccc ctataacgca gtttctgctc aaactttagg ccgttgggtt      4140
     aaagcagagc tcaatgcggc tggcattgac acttcaattt tttcagctca ttctacccgg      4200
     cacgcctcga catctctcgc ggccagtagg ggtgttagtt tagacgaaat tcggcgtacg      4260
     gccggttgga gtaggtcttc tgaaattttt gcgcgattct ataatcggcc aatagtcgaa      4320
     gcctctactt ttcaaactac aattcttaat acagtttaag ttgtttaaca tgttcaattt      4380
     gttattgtcg attaactgag atacttttaa acctataaat tgtttttaat attgtaataa      4440
     aagtttattt cattaacttt tattaaacaa atctgtgctt taaatatcta caatacatcc      4500
     atccggacga gacgtagcat aattgagaaa ttgaacgaac ttaccgtgaa gttcgattac      4560
     aattatgctg tctcgtccgg atggacaacc cctcccaccc gcttcctagg aacagatttg      4620
     ttggctttga attaatgaag gaccctggat acgtaagcgc gagcgcggca tacgcggcgt      4680
     gtgcgccata cacgccacct tcagtttttt attaataata ttataatgtt tttataatat      4740
     ctttaaatat acctgttgag gatagtgcag cggaacgcta ctacaataca tccatccgga      4800
     cgagacagca taattgtaat cgaacttcac ggtaagttcg ttcaatttct caatt           4855
//
ID   DIRS-2_MSe  repbase;    DNA;    INV; 4854 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4854
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 548-548 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 168-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..1547
FT                 /product="DIRS-2_MSe_1p"
FT                 /translation="MEDISQPTLSKSPRKRSRSKSLSSDTSEKSCNGDDSS
FT                 SESPSPAPTQGKRRRVALREADLERRFDFLSQQLVSQLNNILYTTCSSTAA
FT                 AQTRCNVVDNAMQSTSDVPVSSYIPTSARLDENFLRPPASKINTIADLSVS
FT                 IKEPTVIKANPDRVKKINNMQRFDSVDWKAVRYVDIQKKYVASPAFSELKV
FT                 NEQLRRFEDSFSPIKWPQMERSFAALSNALLAQNEIVNSALQGLIDWSANA
FT                 EVSLNPNCLYDKLCELFGKESNYKTISYDISQIICGKRAEVMELRRRTILK
FT                 SLKDKYVREDIEKIPPSSEYLFNPQDLEAYLQKIGGLENLQRNKNPRPTRP
FT                 TSPQPSTSFQDRSFSAPSSKPSRIDRSYGTGSRKKHDNSADKKRGGRNIKG
FT                 TRKSAKKNK"
FT   CDS           1551..4376
FT                 /product="DIRS-2_MSe_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="HSEFFRWVSKAFPGNLGALQSTQGCLQNDNWRSNSIQ
FT                 PDTTFNLTNTRRDVSISNACYSRNVIRSPKNDAGSRFRACPPNTLIYMPFI
FT                 FDCEKQWKESGNIQFKSFESVHGPTEIQSVSSLSRTEFSAARRLDGQIRYQ
FT                 SSILSYTNKTSAPPFLAYQLQRPSSPNDLPAIRFSCSTKDVRNHYKLDSRS
FT                 VALQGNEAGSLLGRLPNLSSKPEFASGTNKDCYKLFIQPGLDRKFREVDRI
FT                 TNKVTRLPGHQLGYTAQYKIPAPGKDRQNISLPDNSSRCWQLDPQAGATPL
FT                 RVPQFCDLRHPTGKVALPFYAAPEQFASEYTSQAISVFRRSACGTPMVARK
FT                 CGSKKPDTSRVPSIELHNNRCFRCEMGGYSKRQKITREVEQSSTILALQSE
FT                 RNLCCNCRYIRRSGNSRELHSDFTMRQQDGSIVYQERGRNKVTSATSSDQR
FT                 LIVSSRQTKYCTHPSSHSGSLQYRGRSSVAQSEQLRVAPSRRGYVKDFQTL
FT                 GNTKHRPICFRNGTRRIKLRYTRLIRLKRLLSQRFQQMLELRPRLGVSSTG
FT                 TNTASIATPQHRYGSLHTDNPQVEETILANRRQASRFDTTNQDSGSPNKSD
FT                 RHCNRPIPDSHQQSTVGSLVHFGWDALTTTWSPDEKKLLVSCWRPSTLKTY
FT                 VPIWTRWSTWCNNNSVTSHRPDPSQVARYLAYLFLTNNLAYRTILVHKSTI
FT                 ASICETISDVKISSSHIVKHILKAISLAKPVPPKVPIWDVRLVIRHLKNTR
FT                 PKRSLYDISRRTAIILLLSSGRRVHDLSLLRCDPDHFIDNNNTIILRPNFG
FT                 SKTDSSTYQQSNWTFLASPDENTNPIFWLRALMEVTKDIRGSITNLFITTK
FT                 NPYRPATPTIIGGWVKRLLMDAGIHASPGSCRSAVSSLNWVENYPVNEILA
FT                 KANWRHESTFRRFYQKEIRITDTDITEKSLSQYFSVSK"
FT   CDS           1327..3423
FT                 /product="DIRS-2_MSe_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KIYREIRTLVRRVLRLHSLRPPFKIDHFPLPHLNRRG
FT                 SIDRMVLGAERNTIIPPTKREGGETSKGPVNRPKRINDIVSFSGGCLKHFQ
FT                 EIWARYSPPRAVFKMITGARIPFNQTPPLILPTQDAMFRFQTPVTPEMSLE
FT                 VQRMMQAHVLEPAPLTPSFICPLFLIVKSNGKNRVIFNLKALNQYMDPQKF
FT                 SLFHHYRVPNFLQPGDWMVKLDISQAYYHIPIKRQHRRFLRISYNGRLLQM
FT                 TCLPFGLAAAPRMFATITNWTAEVLRSKGMRLVVYLDDYLICHQNQNLLQV
FT                 QTKTAISFLSSLGWTVNLEKSIVSPTRSLDYLGISWDTQHNTKSLPQEKID
FT                 KIYRCLTTRLAAGNWTLKQAQRLLGCLNFATFVTPRGRLHCRSMQRQSNLL
FT                 RNTPHKQSLYSEEVRVELQWWLENVAQKSPIHQECRPSNYIITDASDVKWG
FT                 AIVNDKKLQGRWNSRQRYWHCNQKEIYAVIAAISEEAVTLANSTVILQCDN
FT                 RTVVSYIRNEGGTKSHQLQVLTKDLLSLVDKLNIVLIPHHIPGVYNTEADH
FT                 LSRNRSNSEWHLLDGATSKIFKRWGTPSIDLFASEMAHVVSNYVTLDLLDS
FT                 NAYYHNAFSRCWNYDLAWVFPPPGLIPRVLQHLNTAMGHFILITPKWKRPF
FT                 WRTDVKRRALTRPIKIRDLQTSLIDTATGRSPTHINNLRLEAWYILGGMH"
XX
SQ   Sequence 4854 BP; 1499 A; 1044 C; 968 G; 1342 T; 1 other;
     tattatgtgt tccgccagac gtccgaagtc cattatgaga gagtacatcg tccttttacc        60
     gttcatttgc gctagatgtc gctagtttcc gcctctgtaa tgttactttt acgccctcta       120
     gcttaaaaac gtgaactaaa aatttcttac ctcttttagc cgccgtcatg tttaatcatt       180
     gttgcgtcgt ttttcgagct gttcacatcg tcgctagata agcagttttg ttttaaattt       240
     acatttaaaa taaaatatat aaaattttcg agatttgaag tagaaaattt attaaactaa       300
     ataagtgtaa gtttccgtct cgcgaagtgt aaaaaactat ggaagatatt agtcaaccta       360
     cattatcaaa atcgccgaga aaaaggtcgc gctctaagtc gctttcatcg gatacaagtg       420
     aaaagagttg caatggcgat gactcatcat cagagtcacc ctcgccagca ccaacacagg       480
     gcaagcggcg ccgcgtggct ttgcgggaag ctgatttaga acgaaggttt gatttcttat       540
     cccagcaatt ggtaagtcaa ttgaataaca ttttatacac aacctgttcg tccaccgccg       600
     cggcgcagac gaggtgtaac gtggtcgata atgccatgca atcaacctct gatgtgcctg       660
     tttcgtctta tattcctaca tctgcaaggc tagatgaaaa ttttttgcga ccaccggcaa       720
     gtaaaattaa tacaattgcc gatcttagtg tttctattaa ggaaccgacc gtaatcaagg       780
     ctaatcccga tcgggttaag aaaattaata atatgcaaag attcgattca gtcgactgga       840
     aggccgtccg ttacgtagac atacaaaaga agtacgtcgc atctccggcg tttagtgaac       900
     tgaaagttaa cgaacagtta cgaagattcg aggactcctt ttctcctata aaatggcctc       960
     aaatggaacg tagtttcgct gctctgtcca acgctctttt agcacaaaat gaaatcgtta      1020
     attcagcttt acaaggtctt attgactggt ccgcgaacgc tgaagttagt ttaaatccta      1080
     actgtctata tgataaattg tgcgagttat ttggtaaaga gtctaactat aagacaattt      1140
     catatgatat ttcgcaaata atttgcggta aacgcgctga agttatggag ttacgccgcc      1200
     gaacgatctt aaaatcattg aaagataaat atgttcgtga agacatagag aagatacccc      1260
     catcttcgga atatttattt aatccacagg atttagaggc atatttacaa aagattgggg      1320
     gattagaaaa tttacagaga aataagaacc ctcgtccgac gcgtcctacg tctccacagc      1380
     cttcgacctc ctttcaagat agatcatttt ccgctccctc atctaaaccg tcgcggatcg      1440
     atagatcgta tggtactggg agccgaaaga aacacgataa ttccgccgac aaaaagagag      1500
     gggggcgaaa catcaaaggg acccgtaaat cggccaaaaa gaataaatga catagtgagt      1560
     ttttcaggtg ggtgtctaaa gcatttccag gaaatttggg cgcgttacag tccacccagg      1620
     gctgtcttca aaatgataac tggcgctcga attccattca accagacacc acctttaatc      1680
     ttaccaacac aagacgcgat gtttcgattt caaacgcctg ttactccaga aatgtcatta      1740
     gaagtccaaa gaatgatgca ggctcacgtt ttagagcctg cccccctaac accctcattt      1800
     atatgccctt tatttttgat tgtgaaaagc aatggaaaga atcgggtaat attcaattta      1860
     aaagctttga atcagtacat ggacccacag aaattcagtc tgtttcatca ttatcgcgta      1920
     ccgaattttc tgcagccagg cgattggatg gtcaaattag atatcagtca agcatattat      1980
     catataccaa taaaacgtca gcaccgccgt ttcttgcgta tcagttacaa cggccgtctt      2040
     ctccaaatga cttgcctgcc attcggttta gctgcagcac caaggatgtt cgcaaccatt      2100
     acaaattgga cagccgaagt gttgcgctcc aagggaatga ggctggtagt ttacttggac      2160
     gattacctaa tctgtcatca aaaccagaat ttgcttcagg tacaaacaaa gactgctata      2220
     agctttttat ccagcctggg ctggaccgta aatttagaga agtcgatcgt atcaccaaca      2280
     aggtcactag attacctggg catcagctgg gatacacagc acaatacaaa atccctgccc      2340
     caggaaaaga tcgacaaaat atatcgctgc ctgacaactc gtctcgctgc tggcaattgg      2400
     accctcaagc aggcgcaacg cctcttaggg tgcctcaatt ttgcgacctt cgtcacccca      2460
     cggggaaggt tgcattgccg ttctatgcag cgccagagca atttgcttcg gaatacacct      2520
     cacaagcaat ctctgtattc agaagaagtg cgtgtggaac tccaatggtg gctagaaaat      2580
     gtggctcaaa aaagcccgat acatcaagag tgccgtccat cgaactacat aataaccgat      2640
     gcttcagatg tgaaatgggg ggctatagta aacgacaaaa aattacaagg gaggtggaac      2700
     agtcgtcaac gatattggca ctgcaatcag aaagaaattt atgctgtaat tgccgctata      2760
     tccgaagaag cggtaactct cgcgaactcc acagtgattt tacaatgcga caacaggacg      2820
     gtagtatcgt atatcaggaa cgagggagga acaaagtcac atcagctaca agttctgacc      2880
     aaagacttat tgtctctagt agacaaacta aatattgtac tcatccctca tcacattccg      2940
     ggagtttaca ataccgaggc cgatcatctg tcgcgcaatc ggagcaactc cgagtggcac      3000
     cttctagacg gggctacgtc aaagattttc aaacgctggg gaacaccaag catcgaccta      3060
     tttgcttcag aaatggcaca cgtcgtatca aattacgtta cactcgactt attagactca      3120
     aacgcctact atcacaacgc tttcagcaga tgctggaact acgacctcgc ctgggtgttt      3180
     cctccaccgg gactaatacc gcgagtattg caacacctca acaccgctat gggtcacttc      3240
     atactgataa cccccaagtg gaagagacca ttttggcgaa ccgacgtcaa gcgtcgcgct      3300
     ttgacacgac caatcaagat tcgggatctc caaacaagtc tgatagacac tgcaacaggc      3360
     cgatccccga ctcacatcaa caatctacgg ttggaagcct ggtacatttt gggtgggatg      3420
     cattaacaac gacatggtca cccgatgaaa agaagctact agtatcatgc tggagaccat      3480
     cgactctaaa aacatatgtc cctatttgga caagatggtc aacctggtgt aataataata      3540
     gcgtaacgtc ccatcggcca gatccttctc aagtagccag atacttagct tatttatttt      3600
     taactaataa tttagcgtac cgtacaattc tcgttcataa atctacaata gcttcaattt      3660
     gtgaaactat ttcggatgta aaaatttcaa gttctcatat tgtgaaacat attttaaaag      3720
     cgatttcgct agctaaacca gtacctccaa aagtaccgat atgggatgtg agattagtta      3780
     ttaggcattt aaaaaatact cggccaaaac gttctttata tgatatttct agacgtactg      3840
     ctataatttt gttattgtca tcagggcgca gggtacatga tttgtcgctt ttgcgatgtg      3900
     acccggatca ttttatagat aacaataata ctataatttt acgtccaaat tttggttcaa      3960
     agacagattc gtctacatac caacaatcta attggacttt cttagcgtca cctgacgaaa      4020
     acactaatcc aattttttgg cttagagcct tgatggaagt tactaaggat atacgaggtt      4080
     ctattacgaa tttatttatc actactaaga atccctatcg accagctacg ccaacaatta      4140
     ttgggggttg ggttaagaga ttattaatgg atgcgggaat acatgcatct cctggtagtt      4200
     gccggtcagc agtttcatcc ctgaattggg tagaaaacta cccagttaac gaaattcttg      4260
     cgaaagccaa ttggaggcat gagtctactt ttagaagatt ttatcagaaa gagattcgaa      4320
     ttacagatac cgacattacc gaaaaatctt tatcacaata tttttctgtg agtaaatagt      4380
     caattacttg attaatttat gcattcatat actattgttg cattaatama ccattatggt      4440
     tcccatatca cattgttgca ttatttttaa tttcttataa gccgccagga gataacaaac      4500
     agatctctca taatggactt cggacgtctg gcggaacaca taatataaaa attttacctt      4560
     ccaataaaat ttgtattatg tttcctcaga cgtccgaagt ccaggtaagt ccttcctggg      4620
     ctacctatat tgatattatg agccgaacaa tgattaaaca tgacggcggc taaaagaggt      4680
     aagaaatttt tagttcacgt ttttaagcta gagggcgtaa aagtaacatt acagaggcgg      4740
     aaactagcga catctagcgc aaatgaacgg taaaaggacg atgtactctc ataatggact      4800
     tcggacgtct gaggaaacat aatacaaatt ttattggaag gtaaaatttt tata            4854
//
ID   DIRS-2_PBa  repbase;    DNA;    INV; 1597 BP.
XX
AC   .
XX
DT   21-MAY-2012 (Rel. 19.03, Created)
DT   21-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1597
RA   Bao W. and Jurka J.;
RT   "DIRS retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 504-504 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus, incomplete seqeunces.
XX
SQ   Sequence 1597 BP; 537 A; 280 C; 295 G; 448 T; 37 other;
     gacggagcga taggaatttt agttgtgcct gaatggccaa gccagccttg gttccstctt        60
     ttcgaagagt tattaatcaa cgagccaata attttctgtc caagtaattc gctgttgtct       120
     gcatgcagga gaaagagtac atccgcagac cagacacatg acwttaatgg cagggagakt       180
     atcggccagg cmtttmtaaa kaaaaamgta ccaaggsaag cmatagagat tttamtkgca       240
     tcattatctg ggkccacgmt cagacaatac saatcggcct taaagtkwtg gtgggcattc       300
     tgcagaggmt caggggaagg attctttaat ccatcgswgm wtaaggtact cgstttctta       360
     acsgagmgwt tcaggawgga agcgtcmtat agcactmtca atacattcag atgcgcagtt       420
     tccctaatat caaagaggaa gataggtgat tacgagataa tttgcagatt tatgaaagga       480
     atttttaatt tgagaccgac aagaccaaaa tatacataca catgggatgt ctccatcgtc       540
     ttaggatatt tagaaaagtt gtatcctttg aagaatttgt ctttatggca cttaacagct       600
     aaaactataa ctctcctagc cctatgtaca gctcatagag cacaaactct agccagcatt       660
     aaaatacata acatttttat aaggccaaac gatattgaaa tcaaaataga ggataggatt       720
     aaaacttcag gtcctggaag atatcctcta ctgattcttc caaagttcaa cgataaacct       780
     agtttatgtg tagtatcaac tctgctcaga tatttaaatg ttactagaac actaagaaat       840
     acaagccagc actttattta tagcaattaa gaaacttatg cgccagtggc acagacgagt       900
     acaagtagat ggattaagaa aktgttacaa aaaagcggma tmgacgcmtc sattttcama       960
     gctcactcgg tggcatgcgk ctacatcagc agcctttaag aaggatatag acctcggcat      1020
     aattagaaaa acagcaggct gaaccaataa tccaaacctt cgctaaattt tataatagac      1080
     ctataagttt ggaatcagat aattttgcga agctgtgtta agacagggat attaggkttt      1140
     attttctttg tataaaaata atacaatata gacattaatt ataacaaatg ttaaaatttc      1200
     tcttattgta aagaactaca tgttgtaatc tagagaagga ggcgcgaaat ataattaaga      1260
     agtcgagcga acttacctgt aagtgaagtt cgactacctg taattatatg aagagcctcs      1320
     ttcgaagaga ttacgaccca tccagaaatt tcttaagaaa atttacaccc ataaagccaa      1380
     atttaaagca attttaaaca tctctaaaat atgaggatcg ggcgacaagt tgatgctttc      1440
     ttttctctaa aattgttgtg acctcctagc ggcgcgagag aagtactaca ttgtaatctc      1500
     ttcgaagagg cccttcatat aattacagcc gaacttcact tacaggtaag ttcgttcgac      1560
     tttttaatta tacactatat tataaaacat attatag                               1597
//
ID   DIRS-2_SiOr repbase;    DNA;    INV; 5082 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5082
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 5-5 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 119-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..1603
FT                 /product="DIRS-2_SiOr_1p"
FT                 /translation="MGKTKGKSRSSSRERHVSRKELLRRLERLEKERATSR
FT                 ARSRSPRRQRRSPSQSSHRARSFSGRVGRTGPIANTINANVGGGGSSVDSR
FT                 SSSRHRRRSGSGYDDRSPRGSASYYGTPDRRRSPSVDHSLYGVATNAMDVD
FT                 RGPGGATNILNDKNNLKDQTAGTPPLIIHNDVSLPTEVLDLLGEDPDKTKA
FT                 NGYTLHQALTARWSKILTSGLSREKKEQLMNTSCVPENCKALIPPLVNKEI
FT                 LPCLSAAYIKRDSCHADFQDQLGRGLSSLGKGLNAVLEEGQNISPTMREKI
FT                 LPFLTEAGQIFSNLFFDISQTRRTLILPMLSKSLKDVVETSVPGVYLFGNE
FT                 LAEKVKEAKTLERTAKDLRPQTQSFTFSASKKGGGVATGRSQTSRPYTSRG
FT                 GSSGPLNRGRPVRPKRETRPHKGHAPIRRSQYPHQKR"
FT   CDS           1486..3501
FT                 /product="DIRS-2_SiOr_2p"
FT                 /translation="PRWLIRSFKPGAPGPSKAGNETTQRACPDTEESIPSS
FT                 EALISQMSHIKSAGRLKLFYKQWQNITQNPSVLSCISGYVIPFKCTPSQFL
FT                 SPKSRHLSSEERSQMAMAIKELLSKGAVVKCQPQPNQFLSGIFLTNKSNGE
FT                 KRFILNLKQLNQFITPPHFKMEDYRTAKTKLISSNSFMTTIDIKDAYFLIS
FT                 IDKRHRKYLRFSFEGDLFEFGCLPFGLSVAPFCFTKLLKPVIKILREHGIF
FT                 CVNYLDDFLIIADTFDDCQKNTVFTVQLLQSLGFLINYEKCRLTPNTSQKF
FT                 LGFMFDSQTLRLELPMEKRLKIKSLIQIFTCKKQCKIREFAKFIGVLTSAC
FT                 PAVKYGWLYVKQFEREKFLALLQNHGNYNATMSVPHATLSDDLYWWDNNIL
FT                 TTYNDIRHDTFPIEIYTDASTTGWGACCGTDRTHGFWSERDKKHHINYLEL
FT                 QAIFFGLKCFAQDLSNCNILVRADNTTAVSYINRMGSVQYPNLSKLARKIW
FT                 SWCEERNIWLLASYIPSEENCEADSESRRTAMETEWELSAEAFECIVNTLG
FT                 KPEVDLFASRINNKCANYVSWKKDPGSIAVDAFTVNWNRWSFYAFPPFSLI
FT                 LRTLQKIIQDKAEGIVVVPYWTVQPWYPLFKKLLIGDIITFNPNDNLLLSP
FT                 FRKEHPLRRQLTLVAGRLSARHL"
FT   CDS           3438..4436
FT                 /product="DIRS-2_SiOr_3p"
FT                 /translation="ERASTPEAAYPGCRQIVSTALVKKGVPESAVETTLSS
FT                 ISEATMRQYNASYKLWWDFCHKRNVSVFKAVPSEVILFLQELLDNHPFKYG
FT                 TFNSHRSALSLILPNNIASDTNLKRFLKGASRLRPARPKYDSTWDPKPLLN
FT                 YLSGISTQNLKLLSIKLVSLLALVTGGRLQTISLIRLSNIIIDEEKIQIFI
FT                 SDQIKTSGTLKTQPCLHIPFFKENSFLCAASALLSYVEITKPLRENQDFLF
FT                 ITSTKPHQKASKQTLSRWVKEALKASGIDTSQFQPHSTRHASNSAAFRAGV
FT                 SLELICRTAGWSEKTATFARHYNRPLTKKTDFAKAILRLTD"
XX
SQ   Sequence 5082 BP; 1505 A; 1049 C; 1050 G; 1477 T; 1 other;
     attatttttc agaatctggt cccaggacat cagttgatta tttactatgt agtccgcccc        60
     tggcgcgtgt gctcacacat gtttaaagta ttttctcctg tcgctccctt cctccgcgat       120
     ccgtcttcat tcgtttctgt gtgcatgtgc agtgcggaag tgtcgctttt tatgcttgtt       180
     tacgaacgcc gaaattaaaa cagtaagtaa ttatttctat aatcttacaa tacaagcttg       240
     ttaccttgtc gttgatcgag aattatcatc ctccatcaac gcttttctct tttctcttta       300
     gctagatatt atggggaaaa caaagggaaa aagccggtct tcttctcgag aacgccatgt       360
     ttcacggaag gagcttttga gaaggctaga gagacttgag aaagagaggg caacatcacg       420
     agcgaggtcg cgatcgccac ggcgtcagcg gcgttccccc tctcagtcat ctcatcgcgc       480
     gcgctcgttt agcgggcgcg tgggccgtac tggcccaata gccaacacta ttaatgcaaa       540
     cgtcggtggc ggtggatcct cggtggattc aaggtcaagc agtcgtcatc gtcgacggtc       600
     tggttctggt tatgacgatc gcagtccgcg cggctcggcg tcttattatg gtacaccmga       660
     taggcggcga tcgcctagcg tagaccatag tctgtacggc gtggctacca atgcaatgga       720
     tgtggatcgc ggcccgggcg gcgcgacaaa cattctgaat gataagaata atttaaagga       780
     tcaaacggct ggcacccctc cgttaattat tcataacgac gtctccttgc cgactgaagt       840
     gttagaccta ctcggtgagg atccggataa aactaaggct aatggataca ctttgcatca       900
     ggcccttaca gctaggtggt caaaaatctt aacatccggc ctatctaggg aaaagaagga       960
     acaattaatg aatactagct gcgtcccaga aaattgtaag gccttgatac ctcccttggt      1020
     caacaaggaa attttacctt gtctttccgc ggcttatata aaaagggatt catgtcatgc      1080
     tgattttcaa gaccagctgg gcaggggcct gtcgtcattg ggcaaaggtc ttaacgcggt      1140
     cttggaagag ggtcagaata tttcgccaac tatgcgtgaa aagattttgc cattccttac      1200
     ggaagctgga caaatttttt caaatttatt ttttgacatt tctcagacta gacgtacctt      1260
     gattttaccc atgttaagca aatcactaaa ggatgtagta gagactagtg ttccaggggt      1320
     gtacttgttt gggaacgaat tagctgaaaa ggtcaaggaa gctaaaacat tggaaaggac      1380
     ggccaaggac cttcgtcccc aaacgcagag ttttaccttt tccgcttcta aaaaaggggg      1440
     aggggtggct accggccgat cacagacatc cagaccatac actagccgag gtggctcatc      1500
     cggtccttta aaccgggggc gcccggtccg tccaaagcgg gaaacgagac cacacaaagg      1560
     gcatgccccg atacggagga gtcaataccc tcatcagaag cgctgatttc acagatgagt      1620
     catattaagt cagcaggaag gctaaagtta ttttataaac aatggcaaaa tatcacccaa      1680
     aacccatctg tcttgtcttg cataagtggt tatgtcattc catttaaatg tactccctca      1740
     cagtttttgt ctccgaaatc aaggcatctt tcttcagagg aacgaagcca aatggctatg      1800
     gcaattaaag aattgcttag taagggtgca gtcgttaaat gccagcccca gccaaaccaa      1860
     tttttatctg gtatttttct taccaataaa tctaatggtg aaaaacggtt tatattaaac      1920
     ctaaaacaac taaatcaatt tataacacct cctcacttta agatggaaga ctatcggaca      1980
     gccaaaacaa aattgatttc tagtaatagc tttatgacta caatagatat aaaagacgct      2040
     tatttcttaa tttctataga taagcgacat agaaaatatt taagatttag ttttgaggga      2100
     gatttgtttg aatttggttg tttgccattt ggtttgtcag tagcaccatt ctgtttcaca      2160
     aagcttttaa aaccagtcat taagattctt agagaacatg gaattttttg tgtcaattat      2220
     cttgacgatt ttttaattat agccgatact tttgatgatt gtcaaaagaa cactgtattt      2280
     acagttcagc ttctacagag tttgggtttc ttaattaact atgaaaaatg caggctaaca      2340
     ccaaatacga gccagaagtt tttaggtttt atgtttgaca gccagacttt aaggttggaa      2400
     cttccaatgg aaaaaagatt aaaaataaaa tcgttaattc agatttttac atgcaaaaaa      2460
     caatgtaaaa tcagggaatt tgctaagttc attggagttt taacctcggc atgccctgca      2520
     gtaaaatatg gttggctgta tgtcaaacag tttgagaggg aaaaatttct ggctctgcta      2580
     caaaatcatg gtaattataa tgccaccatg tcggtcccac acgctacttt atctgacgac      2640
     ctgtattggt gggataataa cattttgaca acctacaacg atattaggca tgacactttt      2700
     cctattgaaa tatataccga tgcaagcaca actggatggg gcgcctgctg tggaacagat      2760
     cggactcacg gattctggtc agagcgggat aaaaaacacc acattaatta tttagagctt      2820
     caggccatat ttttcggact aaaatgcttt gcgcaggatc tatcgaactg taacatttta      2880
     gtacgggcag acaatacaac cgccgtatca tacattaatc gcatgggcag cgttcagtat      2940
     ccgaatttaa gcaaattagc cagaaaaata tggtcgtggt gtgaagaacg aaacatttgg      3000
     cttcttgcgt cgtatatacc ttcagaggaa aattgtgaag cagactctga atcacggaga      3060
     actgctatgg aaacagagtg ggagctatca gcagaggcat ttgagtgtat cgtaaatact      3120
     ctgggaaaac cggaggtaga tcttttcgcc tctagaatta ataataaatg tgcaaactat      3180
     gtgtcttgga agaaagatcc aggatccata gcagttgacg cctttaccgt gaactggaac      3240
     cggtggtctt tttatgcatt tccacctttt tcgttaatcc tacgcacgct tcagaagatt      3300
     atccaagaca aggcagaggg tatcgtggta gtaccatact ggacagtaca gccttggtac      3360
     ccgttgttta aaaaactatt aataggtgat ataatcactt tcaaccccaa tgataatctt      3420
     ttgttgtctc cttttaggaa agagcatcca ctccggaggc agcttaccct ggttgccggc      3480
     agattgtcag cacggcactt gtaaaaaagg gggttcccga atcagcagtg gaaacgacat      3540
     tgtcctcaat ttcggaggcc acaatgaggc agtataacgc atcctataaa ttatggtggg      3600
     atttttgcca caaaagaaat gtttctgttt tcaaggctgt tcctagcgaa gttattctct      3660
     ttttacaaga acttcttgat aatcacccgt ttaaatatgg tacgtttaat tcccaccggt      3720
     cagccctctc tctgattctc ccaaacaata tagcatcgga cactaatttg aagcgatttc      3780
     ttaaaggggc ctctcgatta aggccggcta gacccaagta tgattccact tgggatccca      3840
     aacctttgct gaattatcta agcggtatat ccacacaaaa cctaaaactc ttatcgataa      3900
     agctggttag tcttttggcc cttgtgactg gtggacgtct ccaaacaatt tcgctaatta      3960
     gactttcaaa cattattatc gacgaggaaa aaatccaaat ttttatctcg gaccagatta      4020
     agacgtctgg tactcttaaa acacagcctt gcctacacat tccatttttt aaggaaaatt      4080
     cgtttctttg tgcggcttcg gcattgttaa gttatgtaga aataactaag cctcttcggg      4140
     aaaatcaaga ttttctcttc attacttcta caaaacctca ccaaaaagca tccaagcaaa      4200
     ccctaagtcg gtgggttaaa gaggcgctaa aagcttcagg aattgacaca agtcaatttc      4260
     aaccacattc tactcgtcat gcatcgaatt cagcggcttt tagagcaggg gtttctctag      4320
     agctaatttg tcgtactgct gggtggtctg aaaaaaccgc aacatttgct aggcactata      4380
     accgaccatt aaccaagaag actgattttg ccaaagcaat cttaagatta acagactaga      4440
     ttaagattcg tttcgttttt tgttatgtac ttctgtactt attaggattt agaagtttta      4500
     tgttcagtta ccaaatgtta acttctgctt attattgtta aaaatctagg gccactcgat      4560
     acctaaccgt ttagtatatt tgcactttta tattgaagta ggtcctagtt aagaaaatat      4620
     atttctttac gttcttttag cctgcggtgt tttattttaa taattagaac aaaatcctaa      4680
     ttaaaaatag agaaaatcgc aacaacttta aacaactaca tagtaaataa tcaactgatg      4740
     tcctgggacc agattctgaa aaataattaa acgatcaaac gaacttacct gaagttcgat      4800
     cgtaattatt tgatgaatct ggtcccagga catcagttcc cacccattac ccatcgccat      4860
     tttttggctg acccctttta gttgcgattt ttcacgcatc atttaaacaa tatgaagacg      4920
     gatcgcggag gaagggagcg acaggagaaa atactttaaa catgtgtgag cacacgcgcc      4980
     aggggcggac tacatagtaa ataatcaact gatgtcctgg gaccagattc atcaaataat      5040
     tacgatcgaa cttcaggtaa gttcgtttga tcgtttaatt at                         5082
//
ID   DIRS-2_SpEx repbase;    DNA;    INV; 5955 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the beet armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_SpEx.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5955
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 3795-3795 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 176-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           887..2506
FT                 /product="DIRS-2_SpEx_1p"
FT                 /translation="MAQGRGYTTLGELLVENAETQQDEAILERIKILAQES
FT                 LPKGWTQWEVINASKEEIFGEKPEPNVLNKLVFALPTVGLVRAFDPEADHL
FT                 SEKGYRDIRFKLLDWAFTRALILGPPSIANRIRGSAARTELFKQSVDGLRP
FT                 LLHTRYEANKILSGSLSESEKSNRKRRSCSSVFDRSQSQKRRRISPVASTS
FT                 QDSRIECLEKKMDSMFALLLERIDTHHQQQTNLAQTREPDSDKENYSDSEE
FT                 YSGTDSSAGCSWNGPKMDIFSRGPEMSPPTEIEFRPRIKEMDPLIPEPSEP
FT                 IKKEGIECQRLGSEGWNRIRYKEVEKRLQAASVFSALKVNIELGSLKNQPF
FT                 PFLAKQEGMLGTISHGLLLQRKALADGLNNIIKKCPDAGDELRKLLADDSQ
FT                 FKVLSDDLLQFVCAHRAEAIEARRRAYMPKNVPLGAALHSIPPSSTHLFDE
FT                 KRLGTFLRDNGGLAQIFPVLSNRFSERKGNKETFRKPTASHPARGRQQSGR
FT                 THLSASSHNASAQPTAYRMSGGSKPSNKQRNRPKRDQKLPKRRY"
FT   CDS           2283..4376
FT                 /product="DIRS-2_SpEx_2p"
FT                 /translation="VTGFRRGKETKRHFVNQQRLTQREVDSNLGAHIFQHH
FT                 HTMHQPSQQPIVCLEVPNLPISNETDPKGIKSYLSVGIDNFRGGQLMDFLW
FT                 QWEKLGAPKKILKTISGYTIPFVTKPPSVPLRENLERFTTRISDAMSRELK
FT                 VLLRTGVIEKCDAMNGFLSRMFLIPKTNGKVRQIFDLRRLNSFLKPAKFRL
FT                 INQNHIPNFLQENDYLGKLDISQAYFHIPIKKSHRRYLAFAYAGELLQMTA
FT                 LPFGLSSAPLAFSRVSKWLARFLRERGIRVLVYLDDFLFANQDPNELEGQM
FT                 KYAINLLQSLGWCVNLQKSVLKPQREIEFLGIVWNTEINQKRLPHEKVVRL
FT                 QADLDLLLRTRCWSWQTGTALVGRLGFASLVTPLGRLHTRHLQRACQKLSQ
FT                 HRPSQKIAVTSLALDDCSWWMKNVQNPSRIFVPEPTIFISTDASDEGWGVQ
FT                 MSDYHRSGKWTTDQARWHINRKELFTVYIALVEFRDVLKDQSVMIQSDNRT
FT                 VVSYLRNQGGTRSVLLMEMTRKILLFAKHHNITLQSFYLPGRYNSVADSLS
FT                 RSKTLPDWHLREEVTGKIFSRWGTPQIDLFATSQSTVVPVYVSLEARDPQA
FT                 LYINAFSRIWNYHLAWVFPPPPLIPRVLHHLNRASGTYLVVVPRWESVFWR
FT                 NDLKRRALEAPYQIFNLNKNLVDLSTNQPPQKVAELFLEVWKIRGGANW"
FT   CDS           2510..5338
FT                 /product="DIRS-2_SpEx_3p"
FT                 /translation="QFSRGATNGFSLAVGKTRSPKEDLKDNFRLHNTICNK
FT                 TTISPLTRKLRKIYDKNLRCNVEGVKSSPQNRCNREVRCYERVFVSDVFDP
FT                 KNQRKSETNIRSSSPEFFPQTCKVSLNKSEPYSEFPAGERLFRKTRYQSSL
FT                 FPYSHKEKSPKIPCFRLCRRTLANDSPTIRAIQRATGVLSSQQVVSQISEG
FT                 EGNSSSRISRRLSVREPRPKRTRRTDEICNKSSTEPWLVRELAEIGFKASE
FT                 RNRILRNRLEHRNKSKKVTTRKGCPVAGRSRSALKDKVLVLADRHRSSGKT
FT                 GLCVSCNPTWAIAYQASSKGLSKAVTASTKSKDCSDVTGTGRLFLVDEKRP
FT                 KSKQNFCTRTNDFHKHGCLRRRLGSTDERLSSLREMDNRPSEVAHKQKGAL
FT                 YRLYSSSRVSGCLERPVCYDTIRQPNSSILPEKSGRYKVGAAYGNDKEDTV
FT                 ICKTSQYNSPVILSSRTLQFSGRQLVEKQDFTRLASKGGGHWKNILEVGHP
FT                 SDRSVCHESVNSSSSVRLIRGKGSPGSLHKCIQPNLELPFSLGISPSTAYT
FT                 QSSSPSQQSIRDVPSSCPTLGIGILEKRPQTQSIRSPLPDIQPQQESSGPV
FT                 NQSTTTKSSRVVFRGLEDTGWSKLVTGLDPNDIELIQSAWRDSTWRTYGAA
FT                 WKQWVTWCRQNGITPSCPRPQEVATYLGYLSRIRKLAPATILVHKSVVVTL
FT                 ADPTQENRLASHPLVVAMLKAINIQRCSMTVPKSRIWNVNDLIQWLKMNLP
FT                 DRNSIYQVSRHLAILLLLASGRRIHDLTLLSIDDRHCEICDSSITFWPRFG
FT                 SKTDNAKFRQSGWHLTCSGDPSLSLVKWVRCLIELSSKRRRARTDLHHLFI
FT                 TTHGVVKAASRATIAGWLKVPFTELGITNSPGSIRSAVASHHFQNYIAVDD
FT                 ILKRGNWRGSDNFFKHYCRPVSQPRNSDVNPLSDSFTAM"
XX
SQ   Sequence 5955 BP; 1707 A; 1313 C; 1411 G; 1524 T; 0 other;
     tatttcaggt ctgtgccttc ggcttgacct ttcggagata actaccccta cattagagta        60
     cacacatggc tactacttac cttctttatc ctttgtgtga gtgcaacctg cttagcgagc       120
     atctccttgc gtcgtcgcgc atgcgcgaga cgcggcggcg gcaggcgcgc gaggcgtgag       180
     cgcgctcttg ttagtacgct atcaccacgt tagcgtgcgc acatgctgct attttatgca       240
     ataagatacg tgaaacgaga atacgagtaa cgttgttgta acgtttttga agtgttaagt       300
     gacttgccag tggattacaa gccaacgtaa cgaattggta agttcttgat atttgtttta       360
     ttctttttgt gagtgcttta tttgttaaag gaatctgctg agtgtaaaca taatttttgt       420
     tgctgtgcat ggctaagctg gatatttgta cgcatgcatg tcggttcgct atcgcaacca       480
     atgctgacta gctctgtcgg acattccatc cacagggtgc gtgagatatc tgttctatac       540
     gacacgtcag ctgcacggct actgtcataa atgtcagata ctcgctcgcg cggcgcggct       600
     caaatattga gcagcgcggc tcaaatattg cgcggcgcgg ctcaaatatt gagcggcgcg       660
     gctcaaaata ttgcgcggcg cggctcaaat attgagcggc gcggctcgag tttccagccg       720
     cgcggcgcga atattgtatg gcgtggcttg acggccgacc tatgcaacta acctatacat       780
     aggttatcca acgaaccgcc tgcgcctacg gttacagtcg attatgggtt tgtcagtaac       840
     gctgactgac ttgacagctt agtaacgatc tcgttgcttg cttcagatgg cgcagggaag       900
     aggctatacg acgcttgggg agttgcttgt cgagaatgcg gaaacccaac aagatgaggc       960
     gatactggag cgtatcaaga tcttggcgca ggagtctcta cccaagggtt ggacacaatg      1020
     ggaagtcatt aacgcctcaa aggaggagat tttcggggaa aaacctgaac ctaacgtttt      1080
     gaataaacta gtgttcgcgc tccctacggt aggtttagtg cgagcctttg atccagaggc      1140
     agatcatctc tcagaaaagg gatatcgtga tataaggttc aaattgctag attgggcatt      1200
     tacccgcgcc ctcattctgg ggccgccctc aatagcaaac cgaattaggg gatcagcggc      1260
     ccgcaccgag cttttcaagc aatcggtgga tggattacgg cctctgctgc acacccggta      1320
     tgaggctaac aaaatcctat cgggcagcct ctcagagtcc gaaaaatcta accgtaagag      1380
     gagaagttgt tcatccgtct tcgatcgcag ccaatcacaa aagcgaagac gaatctcacc      1440
     cgtggcatca acatcacaag acagtaggat cgagtgctta gaaaagaaaa tggacagcat      1500
     gtttgctctc ctcttagaaa gaattgacac tcatcaccag cagcaaacaa atctggctca      1560
     gacaagggag ccagactcag ataaggaaaa ttactcagac tcggaagaat attcaggtac      1620
     tgattcatcg gctggttgct cttggaatgg cccgaagatg gatatttttt caaggggccc      1680
     agaaatgtca ccacctactg aaatagaatt ccgtcccagg ataaaagaga tggaccctct      1740
     cataccagaa ccttccgaac cgataaagaa agagggcatc gaatgtcaaa gactgggttc      1800
     ggaaggctgg aaccggatcc gatacaaaga ggtggaaaaa cgcttacagg ctgcctctgt      1860
     ttttagtgcc ttaaaggtta atatagagct tggaagtctt aaaaatcaac catttccttt      1920
     cctagctaaa caggaaggta tgctcggcac tattagtcat ggtttgctct tgcagaggaa      1980
     ggctctggct gacggactca ataatattat aaaaaaatgt ccagatgcgg gtgacgaatt      2040
     gcgtaagctt ttggctgatg actcccaatt taaggtcttg tcggatgatt tgctgcagtt      2100
     cgtttgtgct catcgtgcag aagctataga ggcaagacga agagcttata tgccgaagaa      2160
     cgtaccacta ggtgctgctt tacacagtat cccaccgtct tctacccatc tttttgatga      2220
     aaaacgattg ggaacatttc tgagagacaa cggtggacta gcacagatat ttccagtttt      2280
     aagtaacagg ttttcggaga ggaaaggaaa caaagagaca tttcgtaaac caacagcgtc      2340
     tcacccagcg agaggtagac agcaatctgg gcgcacacat ctttcagcat catcacacaa      2400
     tgcatcagcc cagccaacag cctatcgtat gtctggaggt tccaaacctt ccaataagca      2460
     acgaaaccga cccaaaaggg atcaaaagtt acctaagcgt aggtattgac aattttcgcg      2520
     gggggcaact aatggatttt ctttggcagt gggaaaaact aggagcccca aagaagatct      2580
     taaagacaat ttccggttac acaataccat ttgtaacaaa accaccatca gtccccttac      2640
     gcgaaaactt agaaagattt acgacaagaa tctccgatgc aatgtcgagg gagttaaaag      2700
     ttctcctcag aacaggtgta atagagaagt gcgatgctat gaacgggttt ttgtctcgga      2760
     tgtttttgat cccaaaaacc aacggaaaag tgagacaaat attcgatctt cgtcgcctga      2820
     attctttcct caaacctgca aagtttcgct taataaatca gaaccatatt ccgaatttcc      2880
     tgcaggagaa cgattattta ggaaaactag atatcagtca agcttatttc catattccca      2940
     taaagaaaag tcaccgaaga taccttgctt tcgcttatgc aggcgaactc ttgcaaatga      3000
     cagccctacc attcgggcta tccagcgcgc cactggcgtt ctctcgagtc agcaagtggt      3060
     tagccagatt tctgagggag aggggaattc gagttctcgt atatctagac gactttctgt      3120
     tcgcgaacca agacccaaac gaactagaag gacagatgaa atatgcaata aatcttctac      3180
     agagccttgg ctggtgcgtg aacttgcaga aatcggtttt aaagcctcag agagaaatag      3240
     aattcttagg aatcgtttgg aacaccgaaa taaatcaaaa aaggttacca cacgaaaagg      3300
     ttgtccggtt gcaggcagat ctagatctgc tcttaaggac aaggtgttgg tcttggcaga      3360
     caggcaccgc tctagtggga agactgggct ttgcgtctct tgtaacccca cttgggcgat      3420
     tgcataccag gcatcttcaa agggcctgtc aaaagctgtc acagcatcga ccaagtcaaa      3480
     agattgcagt gacgtcactg gcactggacg attgttcttg gtggatgaaa aacgtccaaa      3540
     atccaagcag aatttttgta ccagaaccaa cgattttcat aagcacggat gcctccgacg      3600
     aaggctgggg agtacagatg agcgattatc atcgctcagg gaaatggaca accgaccaag      3660
     cgaggtggca cataaacaga aaggagctct ttaccgttta tatagctcta gtcgagtttc      3720
     gggatgtctt gaaagaccag tctgttatga tacaatccga caaccgaaca gtagtatctt      3780
     acctgagaaa tcagggaggt acaaggtcgg tgctgcttat ggaaatgaca aggaagatac      3840
     tgttatttgc aaaacatcac aatataactc tccagtcatt ttatcttcca ggacgttaca      3900
     attcagtggc cgacagcttg tcgagaagca agactttacc agattggcat ctaagggagg      3960
     aggtcactgg aaaaatattc tcgaggtggg gcacccctca gatagatctg tttgccacga      4020
     gtcagtcaac agtagttcca gtgtacgtct cattagaggc aagggatccc caggctcttt      4080
     acataaatgc attcagccga atttggaatt accatttagc ctgggtattt ccccctccac      4140
     cgcttatacc cagagttctt caccatctca acagagcatc cgggacgtac ctagtagttg      4200
     tcccacgctg ggaatcggta ttttggagaa acgacctcaa acgcagagca ttagaagccc      4260
     cctaccagat attcaacctc aacaagaatc tagtggacct gtcaaccaat caaccaccac      4320
     aaaaagtagc agagttgttt ttagaggtct ggaagatacg gggtggagca aactggtaac      4380
     aggactagac cctaatgata ttgaattaat tcagtctgct tggcgggatt ccacatggcg      4440
     aacatacggg gcagcgtgga aacagtgggt tacgtggtgt agacaaaatg ggataactcc      4500
     tagctgtcct cgaccccagg aagtagcaac ttatttgggg tacctctcac gcattagaaa      4560
     attagcccct gctacaattt tagtgcataa atcagtagta gttactttag cagaccccac      4620
     tcaggagaat cggctagcta gccatccctt agtggttgcc atgttaaagg caattaacat      4680
     tcaaagatgt tcaatgacag taccaaagtc gcggatttgg aatgttaatg atttaattca      4740
     gtggttgaaa atgaacttac ctgatagaaa tagtatttat caggtgtcaa gacatttagc      4800
     catacttctt ttgttagcgt ctggacgtcg tattcacgac cttactcttt tgagcattga      4860
     tgacagacac tgtgaaatat gcgattcatc gataaccttc tggcccagat ttggttcaaa      4920
     gactgataac gcgaaatttc gccaatcagg gtggcatctt acctgttcag gagacccaag      4980
     tttgagctta gttaaatggg taagatgttt gatcgaatta tcaagtaaaa gaagaagggc      5040
     acgtactgat ttgcatcacc tgtttataac gacccatgga gtagtaaaag cggcctcaag      5100
     agccactatc gccggttggt taaaggtgcc ttttaccgaa ctggggataa ccaatagtcc      5160
     aggttcgatt cgatcagctg ttgcctctca tcattttcaa aattatatag ctgtagacga      5220
     cattctgaaa agggggaact ggagaggctc tgataatttt ttcaagcatt attgcaggcc      5280
     ggtaagccaa cccagaaata gtgatgtcaa ccctcttagt gattcgttta cagcaatgta      5340
     actgggcttg ttagttctta agacgattgt tataacttat gtgataatat taagactgat      5400
     tgtcactgtt ggatctcatt attttgttta ttaaattaga gaaaattatt ttttaagttg      5460
     agttggctag gtagcctaaa atagttgtca gcttatgaca ataaatcacc tgttcttatg      5520
     tcaagatact gttgttttat tgtaacacat taccctatca cagtacgctt tagcgcgccg      5580
     gcagaggata gacacgtctc cgaaaggtca agccgaaggc acagacctga aatataaccg      5640
     ttttcccccc aaagggaaga aaacgagtat ttcagatctt gccgaggctt gacctgagca      5700
     agttcttgcc ggctttcgga gctaggtact aacaagagcg cgctcacgcc tcgcgcgcct      5760
     gccgccgccg cgtctcgcgc atgcgcgacg acgcaaggag atgctcgcta agcaggttgc      5820
     actcacacaa aggataaaga aggtaagtag tagccatgtg tgtactctaa tgtaggggta      5880
     gttatctccg aaaggtcaag cctcggcaag atctgaaata ctcgttttct tccctttggg      5940
     gggaaaacgg ttata                                                       5955
//
ID   DIRS-2_SpFr repbase;    DNA;    INV; 4932 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the fall armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_SpFr.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4932
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1644-1644 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 144-bp subterminal TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           659..1462
FT                 /product="DIRS-2_SpFr_1p"
FT                 /translation="MITLYLVGTQQLQDDVLIALGNPSCSDKSYSESIHPE
FT                 IIRRVENVLTSGLEKERKDELLKKYLIPNNFALLEAPKLNRELEGLLSDPI
FT                 KERDKRIEERQQQLGVALSAVLSCLDNFVKVDPNPAKIEVLTDVARLLSDL
FT                 HYNDTCTRKKIVVGVIYCIDKVVKTTESAKRDSFLFGERFNEDVKTANAIK
FT                 KAAPSILKKSNFTRKMGQTRQSNYTQFKNKENFNAPPQANRAKQGRGGRYQ
FT                 PRNSGRQQQQQQPHQKKAYRHKSVRQT"
FT   CDS           1318..3354
FT                 /product="DIRS-2_SpFr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="GKLQCPSTSKSSQTREGGQVSTQEQWEAAAAATTASE
FT                 EGISTQVCTSDIKVKTFAGRLKFFYPCWQRVTQDNVILSWVKGYKIPFVKT
FT                 PYQQIYPKNCTFSESENIVLSKEIDRLLKLGVVSKCTSISGQFCSKIFSIT
FT                 KPNGSTRLILNLKCLNKFIQTEHFKMEDMRTVCKLVSKNNYMCTIDLKDAY
FT                 FLVPVDNDDKKYLRFYFKNNIYEFNCLCFGLCTAPLTFTKLLKPVISYLRS
FT                 VGFKSVIYLDDIICIGESFNECVENCSKTVSLLECLGFYINRDKSSLHPKQ
FT                 IVEYLGFIINTRTMTLSVSDKKRCSILLLLKRYLNKDSCTIRDFAQLIGTL
FT                 TACCPAVSYGFLYTKVLEKQKCVELFNHNNDFDSVMIINNECKEDLQWWYN
FT                 CIESAVNPIKNCQFKLEIYSDASRTGWGIFCDGQVANGFWTEEDKKSHINY
FT                 LELLAAFLGLQCFAKDLSNCQILLRIDNTTAIAYINRMGGIQFNNLNQLAR
FT                 EIWQWCEAHKIWIFASYIKSKDNKEADFESRNDNIDCEWELSPTAFLDIVR
FT                 SFGNPSIDLFATRANTKCSRYLSWHRDPYAENIDAFTVCWHNYTLFYAFPP
FT                 FALISKTVQKIKDDNAIGILVFPMWPAQPWYPFVKSMAISDIKVFKPSKQL
FT                 LLSPSRKLHPLHNSLSLGACILSGKHSRNK"
FT   CDS           3240..4304
FT                 /product="DIRS-2_SpFr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="SVQAFKTIIVITFQKTSSSAQQPFPGGLHIIREAFKK
FT                 QMIPEDTIEVMISSLSVNTIKQYSVALNKWWIFCKGENIFDVSITKILEFL
FT                 TXQFKTGSSYTSLNTTRSALSLILSCEIGIDPQIKRFFKGIFKLRPSRPKY
FT                 NDTWDPAIVLNHIEKWYPLQDLSFLKLTKKLVMLLALTSAQRIQTLSLIRL
FT                 NNIQFVEAGVNIEISDLLKTSKPGKQQMCITLPYFLAKPEICPVTTLQYYI
FT                 NYTKTLRKVEFNNTEMLLISVKKPYNYASRQTISRWIKQTMKDSGIDIKRF
FT                 TPHSTRHAATSRACREGVTLDTIFRSAGWSIGSKVFANHYNRPLIKSNDKY
FT                 IFAKTVCNIESH"
XX
SQ   Sequence 4932 BP; 1724 A; 748 C; 890 G; 1566 T; 4 other;
     taattatatg aagtgcttag tcctcgataa ttattttgtt taccatgtag tcccactatc        60
     atctattgtg tgaacgcgaa tatttagaga atcctgcaaa aaaaaaattt atacacgggc       120
     aacactattc atctaatgtc attcactatt tttcgcgttg tgtgctcgca cggaattttt       180
     cgtagaaata ttatctgtta agtgattact gtatttagtg agttcaagtt gattaaagta       240
     aaatgcctaa gagtagagaa gaaaaattat ggaagaagct gaagaaactg gaagaaaaaa       300
     ttaagaaaag tcaaagtcgt cgtagacgaa ttagatcttt aagttcgtcg gagcgggagt       360
     cggtagacga tcctgatcca aatgagagac ctgaagtaat cgaggacaca ggtatgtgtt       420
     agtttattgg atgccttgat tgccaaagcg acaagtttct tttgtctttt aggtataaaa       480
     gtatttatca cccgccatct tgtcaattct tgtcgagact ggatttcaaa atctcaagtt       540
     gagaaaaagc ataaatagaa gttctatgtt atgcgcgtaa tattgtttct ttaatacaat       600
     ataattttta caataactga gtcagttatt tcatgtgtaa tcagactaag ttagtctaat       660
     gattacgttg taccttgtag gtacccaaca actacaagac gatgtgctga ttgctctggg       720
     aaatccgtcc tgctctgaca aatcttatag tgaaagtatt cacccagaga taataaggag       780
     agtagagaat gtgttaacga gtggcttgga aaaggagcgc aaggatgaat tattaaaaaa       840
     gtatctgatt cccaataatt ttgccttgct agaggctcca aaactaaaca gggagctaga       900
     aggcctatta agcgacccaa ttaaagaaag agacaaaagg atcgaagagc gacagcagca       960
     attgggtgtt gcattgtctg ctgtattatc ttgtttagat aattttgtta aagttgaccc      1020
     aaacccagca aaaattgaag tcctgacaga tgtagccagg ctactaagtg atttacatta      1080
     taacgacact tgtacacgta aaaaaatcgt ggtcggtgta atttattgta tagacaaagt      1140
     tgttaaaaca acagaaagcg ctaaacggga cagcttcctg tttggagaaa gatttaatga      1200
     agatgtaaag actgctaatg ccataaagaa ggcagcacca agcatactga aaaagtccaa      1260
     tttcacccga aagatggggc agaccaggca gtcaaattat acccaattta aaaataagga      1320
     aaacttcaat gcccctccac aagcaaatcg agccaaacaa gggagggggg gcaggtatca      1380
     acccaggaac agtgggaggc agcagcagca gcaacaaccg catcagaaga aggcatatcg      1440
     acacaagtct gtacgtcaga cataaaggta aagacctttg caggtcgtct taaattcttt      1500
     tatccttgtt ggcaaagggt cactcaagat aatgttattt tatcttgggt aaaaggttac      1560
     aaaattcctt ttgtaaaaac tccataccaa cagatatatc ctaaaaactg tacattttca      1620
     gagtctgaaa atatagtttt atcaaaggaa attgatagat tattaaaatt gggtgtcgtt      1680
     agtaagtgta catcaattag tggacaattt tgttcaaaaa tattctctat tacaaagcct      1740
     aatggtagta ccagacttat tttaaatcta aaatgcctaa ataagttcat ccagacggaa      1800
     cattttaaaa tggaagacat gagaactgtt tgtaaacttg tttctaaaaa taattacatg      1860
     tgtacaattg acttaaaaga tgcatatttt ttagtcccag tagataatga tgataagaaa      1920
     tatttacggt tttattttaa aaataatatt tatgagttta attgtttgtg ctttggtttg      1980
     tgtactgctc cacttacgtt tacaaaattg ttaaaaccag ttatatctta tctacgcagt      2040
     gtgggattta aatctgtgat ttatcttgat gatatcatat gtattggaga atcttttaat      2100
     gagtgtgtag aaaattgtag taagacagtg tcactactag aatgtcttgg attttatata      2160
     aatagggaca aaagtagttt gcaccctaaa caaatagttg agtatttagg atttataata      2220
     aatacaagga ctatgacctt atcagtctct gataagaaaa gatgttcaat ccttttatta      2280
     cttaaaaggt atttaaacaa agattcctgt actattaggg attttgcaca actcattgga      2340
     actttaacag cttgctgtcc agctgttagc tatggttttc tgtacacaaa agttttggaa      2400
     aaacaaaaat gtgtagagtt atttaatcat aataatgact ttgattcagt tatgattata      2460
     aataatgaat gtaaagaaga tttacagtgg tggtataatt gtatagaatc agccgttaac      2520
     cctattaaaa attgtcaatt taagttagaa atttattcag atgcatctcg cactggatgg      2580
     ggaatatttt gtgatggtca ggtagcaaat ggattttgga cagaagaaga caagaaaagt      2640
     cacataaatt atttggaact actagcagct tttcttggat tacaatgttt tgcaaaggac      2700
     ttaagcaact gtcaaatttt actacgtata gataatacaa ctgccatagc ttatattaat      2760
     agaatgggtg gtattcaatt taataattta aatcagcttg cacgagaaat atggcaatgg      2820
     tgtgaagccc ataaaatatg gatctttgca tcttatataa aatctaagga caataaagaa      2880
     gctgattttg aatctagaaa tgacaatatt gattgtgagt gggagctgtc acctacagcg      2940
     tttctagata tagtgaggtc atttggaaat ccttccattg atctatttgc tactagagcc      3000
     aatactaagt gcagtagata tctgtcctgg catagggatc cgtatgcaga aaatattgac      3060
     gcttttacag tatgttggca taattatacc ttattttatg catttccacc atttgctttg      3120
     atctctaaga cggttcaaaa aataaaagat gataatgcta taggcatttt agtttttcct      3180
     atgtggccgg cacaaccttg gtacccattt gttaaatcaa tggccatttc agatattaaa      3240
     gtgttcaagc cttcaaaaca attattgtta tcaccttcca gaaaacttca tcctctgcac      3300
     aacagccttt ccctgggggc ctgcatatta tcagggaagc attcaagaaa caaatgatac      3360
     ctgaggatac catagaggtt atgatatctt ctttatctgt taacacaatt aaacaatatt      3420
     cagtagcatt gaataagtgg tggatttttt gtaaaggaga aaatatcttt gatgtttcta      3480
     tcacgaagat tttagaattt cttacagawc aatttaaaac aggaagttct tatacttcat      3540
     taaatactac tagatcagca ttgtccttga tacttagttg tgaaataggg atagatcctc      3600
     aaataaagag gttctttaaa ggtatcttta aactacgacc tagtcgtcct aaatacaatg      3660
     atacatggga tccagcaatt gttttgaatc atatagaaaa atggtaccca ttgcaagatt      3720
     tgtcatttct aaaattaact aaaaaactgg taatgctgtt agcccttact agtgcacaaa      3780
     gaattcaaac tttatcattg attagactaa ataacataca atttgttgag gcaggagtaa      3840
     atatagagat cagtgatttg ttaaagacat ctaaaccagg aaaacaacaa atgtgcatca      3900
     cattacctta ctttcttgcg aaacctgaaa tttgtccagt aaccacatta caatattata      3960
     taaattatac aaaaactttg aggaaggtag aatttaataa tacagaaatg ctattaataa      4020
     gtgttaagaa accttataat tatgcaagta ggcagacaat tagtcgttgg attaaacaaa      4080
     caatgaagga cagtggtata gacatcaaga gatttactcc tcactcgact cgtcacgcag      4140
     ccacttccag ggcatgtaga gaaggtgtaa cattagatac catttttagg tcagctggtt      4200
     ggtctattgg atcaaaagtt ttcgcaaatc attataatag accattgatt aaaagtaatg      4260
     ataaatatat ttttgctaag actgtttgta atattgaatc tcattagtac attgtactta      4320
     agtattattt gaccaaatag tttattttat cagtactaag tacttagtta ataataatat      4380
     gattaatagt aagtatatac caagtgacat gtgtaacatg cwtaaattat aagccactgg      4440
     taataaaaga ctgattgtat gtataattgt tttattgttt tatagcattc aatatgtaat      4500
     ttccaactac atctctaaac atctacatgg taaacaaaat aattatcgag gactaagcac      4560
     ttcatataat ttacaaaatt aaacgaactt acctaagtga agttctattg taattatatg      4620
     aagtgcttag tcctcgatac kagactccct cccaagccca aaacaagatc atatttgttt      4680
     tacccaagat ggtagttggg aaattactat atttgtgatc ttctcattac aggttgctct      4740
     aaatagaatg acattagatg aatagtgttg cccgtgtatw aatttttttt tgcaggattc      4800
     tctaaatatt cgcgttcaca caatagatga tagtgggact acatggtaaa caaaataatt      4860
     atcgaggact aagcacttca tataattaca atagaacttc acttaggtaa gttcgtttaa      4920
     ttttgtaaat ta                                                          4932
//
ID   DIRS-2_TrNi repbase;    DNA;    INV; 5318 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the cabbage looper genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-2_TrNi.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5318
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 2-2 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. ~145-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           941..1795
FT                 /product="DIRS-2_TrNi_1p"
FT                 /translation="MSPSNIPQENARLEPTVCSEDIIPENSEIELDDDILQ
FT                 ILGVDPTQVIIYGKDIQKEVAVRFEHTATAGLSKDERKEINEKFLIPGNCK
FT                 LIGAPALNLEIKAALSETIIKRDKAIEAKQNLLASAISGLGEAISLVLSSK
FT                 EKNTDLLRILMNTGRAMCDCQHNDTIARRNFILYAVKKDMKESLINTKIDE
FT                 FLFGQNLTDTLKAAKAINKSGAELKPPAPTPKPSTSKPNPSTSKNWKGSYA
FT                 ARKPPPKTTNTTAPAEGRRTRSQHASSSRPYNQRPSRNMTRSRR"
FT   CDS           1621..3696
FT                 /product="DIRS-2_TrNi_2p"
FT                 /note="reverse transcriptase, and ribonuclease H."
FT                 /translation="TKSVNFKKLERFVCSAQAASEDDEHNSSGGGSSDEEP
FT                 ARELLETIQSAALAQHDAQPSLMLAPTTSSPVQYAGRLAQFYQQWLLLTND
FT                 PVILSYIEGYKIPFSRPVFQNTIPPLRNYSMHEKSQFEEAINDLSKIGAIS
FT                 KCQPCEGQFISSIFLVPKPNGKRRFILNLKKLNEFIDTEHFKLEDFRTAIK
FT                 LVSKDCFMAKIDLKDAYFMIKIHPDFKKYLRFQWNLLLYEFNVLPFGLSTA
FT                 PYVFTKIIKPVARLLRSTGYVSTVYLDDWLLIGQSYNTCLKNLNQTRSLLT
FT                 SLGFILNYDKSILVPSKDCLFLGYKIDSKKFQVYLPEEKIDHISKQIDKML
FT                 SLERCKIREFARFVGLLTSACPAIEYGWLYTKLFERIKYLNLKTTYDNYDC
FT                 YMNIPQSLLPDLYWWKHAIKHSVNKIKHDSYDLEIFSDASTMGWGAVQGYN
FT                 KASGMWSENERNMHINYLEILAAFFGLKIYAKSLTNCQILLRIDNTTAISY
FT                 INRMGGIQFPHLTELAKRLWQWCESRQLHVYASYISSVDNAEADAESRRIH
FT                 PDIEWELSSIAFQRIAQAFGYPEIDLFASRLNKKCCTYVSWHRDPDAYKVN
FT                 AFTINWTNFYFYAFPPFSVILKTLRKIVSDKARGILIVPLWPTQPWYPIFK
FT                 SLVISQILYLKPNENLIISPHSSGRNMHTQITLAAAILSGQHS"
FT   CDS           3609..4652
FT                 /product="DIRS-2_TrNi_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="KFNNFSSFQRPEYAHSNYPGCSNIIRTAFLKRQVPSS
FT                 TLNLMMNSLSHNSIKQYNVYLKKWHDYCIQNKVDLYFATIPDILNFLTILY
FT                 NTGARYGSLNTCRSALSLVIGEHVGLDQNVKRFFKGIFRSRPPMPKYDTSW
FT                 DPSLVLKFLEELYPNETLSLEMITKKLATLLTLVTAHRVQTLSKINIDNIS
FT                 FSESRASIKITDLIKTSRIGSPQPTLILPFFVQKPQICPGKTLRDYLCKTA
FT                 TLRGDVKYLFITLKKPYRAVSSQTLSRWIRATLGNAGVPVATFSVHSTRHA
FT                 ATSCAHRLGVSLDAIRRTAGWSATSNIFFKYYNRPLDAGDNESFARTIIDN
FT                 FQNKN"
XX
SQ   Sequence 5318 BP; 1671 A; 1072 C; 991 G; 1584 T; 0 other;
     ttatccttca gcttcgtctt tcgagattag aaaacacttg tagtatcgca tagcgatcgc        60
     cattctgcac tatcttttag tttagttttt tttttttttt tttgtaggta ggttggtaat       120
     ttacccgatc actcgccaca ctttaacgat cattcgcatt ttagtgctct gccagactgc       180
     actcgtccat atcgctcgtg tattggcgtt gtatctttta ctcggtaatt aatagataag       240
     cttaaacaat gcctaaaagg aaaggaagtg atcataatta tgaagttttg ttgaaaaagt       300
     taaggaagat tgaaaataaa atacgtcaat gtgatggaca aacaacacgt gctcgccgtt       360
     ctaggcgtgt cagagtgctt tccagttcgt cttcctcgtc gcgggaatca ccaggtcaac       420
     aagttgatac cgttaacagt gagtactttt tttctttcat aaccttgaat aagtgaacta       480
     tatcctcgta agaatggtat tgcggacagc ttttggggct gtctcgtgcc atttataggt       540
     attaggtatt gcgggcagct tgtggggctg ctccgtgcca tttacctgta atttacacgg       600
     tgttgtaggc aaactcgtgc cgctctttgt tcgtgtaata cggtattgag ggcagttcgt       660
     gtggctgttc cttaccattt atatagtgtt gcgggtagct tatatggggc tacctcctca       720
     ctattggcat atactctaaa tgagcttgca gtgtaagcac ttcctcatgg ttatttatac       780
     ataatgttgc gggtagtttg aagggctact tcttcattat tcacattcca tgaattgata       840
     ttcaattcgt ctgcttacag acgagatttc tccatgccac gccgaatcgg atttggaacc       900
     agcgacgaca gaccagggca cggtggcaga ccagggcgcg atgagtccgt caaacattcc       960
     acaagaaaat gctcgcctgg aacccaccgt atgttcggaa gatatcatac ccgaaaattc      1020
     cgaaatagaa ctggatgatg atatactgca aattcttgga gttgatccca cgcaagtaat      1080
     aatttatggg aaagatatac aaaaggaagt tgctgttcgt tttgagcata cagcaacggc      1140
     aggattgtcc aaagatgagc gtaaagaaat caatgaaaaa tttcttatac cagggaactg      1200
     taagcttatc ggtgcgccag ctttaaatct ggaaatcaaa gccgctcttt ctgagaccat      1260
     aataaaacgc gataaagcga tagaagcaaa acaaaatctg ctggcatcag caatttcagg      1320
     cctcggcgag gcaatttcgc tcgtcctctc ctcgaaagaa aagaacacag atctcttacg      1380
     tatcctgatg aacaccggac gtgccatgtg tgattgtcaa cataacgata ctattgccag      1440
     acgtaacttt atcctctacg cagtcaagaa ggatatgaaa gagtctctca ttaatacgaa      1500
     gattgacgaa tttctattcg gacagaacct aactgatact ctaaaagctg ctaaagcaat      1560
     taacaaatct ggcgcagagt taaaacctcc tgcccctaca ccaaaaccta gtacaagtaa      1620
     accaaatccg tcaacttcaa aaaactggaa aggttcgtat gcagcgcgca agccgcctcc      1680
     gaagacgacg aacacaacag ctccggcgga gggtcgtcgg acgaggagcc agcacgcgag      1740
     ctcctcgaga ccatacaatc agcggccctc gcgcaacatg acgcgcagcc gtcgctgatg      1800
     ctggcgccta caacatcatc tccggtacag tacgctggga gactggctca attctatcaa      1860
     caatggctgc ttctcactaa tgatccagta attctttcat atattgaagg atacaaaatc      1920
     cctttttcac gccctgtgtt tcaaaatact attccaccat taagaaatta ttctatgcat      1980
     gaaaaatctc agtttgaaga agccataaat gatctgtcaa agattggtgc tatttcaaaa      2040
     tgtcagccat gtgagggtca attcatatct agtatattct tagtaccaaa accaaatgga      2100
     aaaaggcgat tcatactaaa tttaaagaaa ttaaacgaat ttattgacac agaacatttc      2160
     aaacttgaag attttcgaac tgcaataaaa ttagtgtcta aagactgttt catggcaaaa      2220
     attgacctta aagatgctta ttttatgatc aaaatacatc cagattttaa aaaatacttg      2280
     cgctttcagt ggaatcttct actttatgag tttaatgttt tgccattcgg tcttagtaca      2340
     gccccatacg tgtttaccaa aattataaag ccagtggcta gacttcttcg ctccactggc      2400
     tatgtatcaa ccgtatattt ggatgactgg ttattgatag gacagtcata caatacatgt      2460
     ctaaagaatt taaatcaaac taggtcattg ttaacctcgt taggttttat tttaaattac      2520
     gacaaaagca ttttagttcc aagtaaagac tgcttattcc ttggatataa aatagactcc      2580
     aaaaaattcc aagtctactt acccgaagaa aaaattgacc atattagtaa acagattgat      2640
     aagatgttat cgctggagag atgtaagata agggaattcg caagatttgt aggtctgctt      2700
     acatcagctt gtccggccat tgaatatggc tggctgtaca caaaattatt tgaaagaatt      2760
     aaatacctca atttaaaaac tacttatgat aattatgact gttacatgaa tattccccaa      2820
     tctttgttac cagatttgta ttggtggaaa catgctataa agcattcagt aaataagata      2880
     aaacatgaca gttacgactt ggagattttt tcagatgcct caactatggg ttggggtgct      2940
     gtgcagggtt acaataaggc tagcggtatg tggagcgaaa acgaacggaa tatgcacata      3000
     aattatcttg aaatacttgc agcatttttt gggttaaaaa tttacgcaaa aagtctaact      3060
     aactgtcaaa ttctactaag aatagataac acaactgcta tctcttacat aaaccgcatg      3120
     ggaggcatcc aattcccaca ccttacagag ctagccaaga ggctttggca gtggtgtgaa      3180
     agccgtcagt tgcatgttta cgcttcctac atcagctcag ttgataatgc ggaagcagat      3240
     gctgaatcta gacgcatcca tccagatatt gagtgggagt tatcatccat tgcttttcaa      3300
     agaattgcgc aggcttttgg ttatccagag attgatctct ttgcgagtag actgaataaa      3360
     aaatgttgta cttacgtctc ttggcaccgt gatccggatg cctacaaagt taatgccttc      3420
     acaattaatt ggacaaattt ttatttttac gctttcccac ccttctcagt aatacttaaa      3480
     acattacgaa aaatagtatc agataaagcc aggggtattt taattgttcc cctgtggccc      3540
     acacagccct ggtaccctat tttcaaaagc cttgtgattt cccagatttt atatttaaaa      3600
     ccgaatgaaa atttaataat ttctcctcat tccagcggcc ggaatatgca cactcaaatt      3660
     accctggctg cagcaatatt atcaggacag cattcttgaa aagacaggtc ccatcatcaa      3720
     cattaaacct aatgatgaac tctttatcac acaactcaat taaacaatat aacgtatact      3780
     taaagaaatg gcatgattac tgcatacaaa ataaagttga tttatatttt gctactatcc      3840
     ccgatatctt aaatttttta acaattctgt ataatactgg agcgcggtac gggagtctta      3900
     atacttgtcg ctctgcttta tcattggtta taggcgaaca tgtaggatta gatcaaaatg      3960
     ttaaacgttt tttcaagggc atatttcgat ctcgtccccc aatgcctaaa tatgatacgt      4020
     cttgggatcc ttcattagta ttaaaattcc tagaagagct ttatccaaat gaaacgttat      4080
     cgctagaaat gataaccaag aaactagcta ctctgttaac tttagttact gcacacagag      4140
     tacaaacgtt atcaaaaata aacatagata atatatcatt ttctgaatct agagcatcta      4200
     taaaaataac agatctgatc aaaacctcac gaattggttc tcctcaacca acattaatct      4260
     tacctttctt tgtccaaaaa ccgcaaatat gccctggaaa aacattacgg gattatctat      4320
     gtaaaacggc aaccttacgc ggtgatgtca aatacctttt catcactctt aaaaaaccat      4380
     atcgtgccgt atctagccag acactaagcc gctggatccg tgcgacgttg ggcaatgctg      4440
     gcgtaccggt ggcgacgttt agcgtgcaca gcacgcgaca cgccgccacc tcgtgtgcac      4500
     atcgcctcgg tgtgagcctg gatgccatta gaaggacggc tggctggagc gccacctcca      4560
     atattttttt caagtattat aatagacctc ttgatgcagg cgataatgaa tcatttgctc      4620
     gtacaattat tgataatttc caaaacaaaa attagaatat acatattata tgtgtgatgt      4680
     gactatatta tgttagtatg agtaatgatc tacctcgtaa gtactcgatt attcaaataa      4740
     aggatcagtt gattttcaga gttattgttt attatttatg accttcaggt catgatgata      4800
     gagagttaca catacttatc atatggtaag tatgtgtcat gtacaaataa gcttaatgct      4860
     catacacacc tacttacctc tgaaatattt cactattgtc tctaaatatc tacaagtgtt      4920
     ttctaatctc gaaagacgaa gctgaaggat aattaatgat taaacgaact tacctgtaag      4980
     tgaagttcta tcataattat acgaagcttc gtctgaagag attagaaacc caccctatct      5040
     ttgtgttgat gtttactaac accatgagat cccttcccta atcgtgaaat attggtaagt      5100
     atcctttctc taaactaaat gatcgttaaa gtgtggcgag tgatcgggta aattaccaac      5160
     ctacctacaa aaaaaaaaaa aaaaaactaa actaaaagat agtgcagaat ggcgatcgct      5220
     atgcgatact acaagtgttt tctaatctct tcagacgaag cttcgtataa ttatgataga      5280
     acttcactta caggtaagtt cgtttaatca ttaattat                              5318
//
ID   DIRS-3_FoCa repbase;    DNA;    INV; 4877 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4877
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2435-2435 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The sequences 27-161 and 4680-4813
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           712..1212
FT                 /product="DIRS-3_FoCa_1p"
FT                 /translation="LFIPELNDELTDLLKDIENTTDFGPSLLPNVSSGFAK
FT                 TAARPLTKESKATLAAKIKVPENCKEFLVPKVNSEIWRLLPSQAKILDIKQ
FT                 QQIQQSLTLGLSSLAVITNTIVNSKESIPKEVLSSVVKQAMDGANILGDQF
FT                 QAISSRRRFEMKRHLNPEYGGICSQQVD"
FT   CDS           1720..3462
FT                 /product="DIRS-3_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MPNFSDRDTKLIDDCIKKLSETGAIVISSEEQDQFVS
FT                 KIFTVPKPDGSRRPIINLKLFNSYISNPHFKMESVKTAMTLVSKDCFMAVI
FT                 DLRDAYHAIPVHESFQKYLKFRWKGILYKYTCIPFGLCLAPWLYTKLNKPI
FT                 ISYLRSRGVFLVSYLDDTLIIGKTESECKKFLKLALNLFLRLGLVVNEEKS
FT                 QLRPLKQVRFLGFIIDSEAMRMVLPQDKCDTIITKCRSVSEINVTSIQRVA
FT                 ELVGSLVAASPATKYGMLYTRQLEIEKSKALVISGGRYSGQIILSPIAKMD
FT                 IQWWIGNIKSEYRSLSQFKPTKVIFSDSSPLGWGAVCNGQEARGNFSPEDQ
FT                 LLHINVLELMAVFYGINSFAKNALNENIHLRVDSSTAMAYVNNFGGCRSEE
FT                 LHNVAKKIWIWCEERHIILHATYINTKDNVDADRLSRMKVDFSDFSLTKSY
FT                 FEKICMKFWSPNVDLFATYQTTQCERYFSWKPDPFALGEDAFTFKWESKFY
FT                 AFPPFNLIGRVINKIIEDQVEGILVVPNWSTQPWYPMFKNLIKSEIIYLGP
FT                 SKKLLFNPISRXYHQINKNLQLMAAVLSGSRCQD"
FT   CDS           3453..4397
FT                 /product="DIRS-3_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MSGLNLPERTLSILKESKSSGTWRQYESSWKKWSLFC
FT                 VANGWSEWESNVRHCLLFLTHLYDSGLSYSAINSSRSALSSLLENVDGSAL
FT                 GQHKLVVNFMKGVARLRPPAQRYSSVWNPDTVLSYLVTYDINSCSFQQLTL
FT                 KTIALLALATGQRVQTLVSIKINDIIWGNPIQIRLTSILKTTSXSNPNPVL
FT                 ILPYFENKQICPALALSKYVSETQKLRLSDQLFIATTKPFKPISSQTVSRW
FT                 LVNVLNLSGVDINKFSAHSFRHSSTSKASQLGVNVDTILKRVGWSAKSKVF
FT                 AKFYKRPIDNSSEFAEKVLSLGD"
XX
SQ   Sequence 4877 BP; 1565 A; 846 C; 953 G; 1508 T; 5 other;
     attttatttc atcttcctac accttcgaca tcacaatgaa tagttggtag ttgttgagcc        60
     agagactggg gaaacacgat atttatgcct ttttaaagct gccgcagaat aaaaactgat       120
     gccatgcatg caccaccacc accaatatgc gcctcatagt tgatttaggc acacggggat       180
     tcacacgtac aatactatcc tgcccaaaaa ttcgtttgga aaatagttaa aattttaatt       240
     gtgataagtg tttttgtctt ctttggagct caacaatcaa ggtaaagtaa tttaaagttt       300
     tttctgggga ctgggttgga ggagcacgag tttgtgacag gttttaattt gaatatttaa       360
     attacgaaaa aataaaaata aataaataaa tttcaccttt tcattaaatt tgtgataaaa       420
     atataaagcc aagagatcct cgacgaggaa aatggctgtg gtgaccttga taggcccact       480
     ttaattaaac tctaataatt caattaatat taatgctcgt tttatttaaa aggaaatggc       540
     tgggggttct gagcagcaaa gagattggtc tctggggtta tcggacgacg agaatgatac       600
     tgatgctgag gcaaataaaa taattggaaa cggagatggt agagtcctat tacaaattta       660
     ttgttcctta ctaatatttc tctcgcaatg agcaagatat gagaataata attattcatt       720
     ccagagttga atgacgagtt aaccgatctc ctgaaggata ttgaaaatac taccgatttc       780
     ggtccaagtt tgttaccaaa tgtcagttca ggatttgcca agactgcagc aagaccttta       840
     acaaaagaat ctaaggcgac tttagcagcc aaaatcaaag tacccgagaa ttgcaaagaa       900
     tttcttgtcc caaaagtgaa ttcagaaatt tggcgactgc ttccatccca ggcaaagatc       960
     ctggatatta agcagcaaca gatccaacaa tctcttacac ttggattatc gtcactggcc      1020
     gtaattacaa atacaattgt aaattccaag gagtcgattc ctaaagaagt tcttagctcg      1080
     gttgtaaaac aagcaatgga cggggctaat attttggggg atcagttcca agcaatatca      1140
     agtcgtcgcc gttttgaaat gaaacgacat ttgaatccag aatatggagg aatttgctca      1200
     cagcaggtag actaaaattt aaagtgaatt aaagataaaa ttgaaagaaa tattccaaag      1260
     tcaaattaaa ttctagtttc ccagttccga atggctattt ggaactgatt tggctgaatc      1320
     gctaaaatct acgaaggcga catccacttt aatgcgaagt acgatgaatc gtggtggacg      1380
     ttatcatccc tactctcaac ctaggccgac ttatcaatct caaaaccagc ctcgaccttc      1440
     tttaaactgg ggtcgcccgc aacaagcaca gttccgaggc agcgggcaga accagccaag      1500
     attttcacaa agacctcagg gacaccgttt tttcaaccag aacaatcaat acaatcgatt      1560
     ccaaaagtat taaatgttga caaggtatgt gaggctggta ggctaagtaa gttttataag      1620
     gaatggagtg aaattacgaa cgacaaattt attttagatg ttattcgggg ttttaaaatc      1680
     ccattgattt cttgtccgtc ccaaataata gaaccatcca tgccaaattt ttcagatagg      1740
     gatacaaaat taattgatga ttgtattaaa aagttaagcg agacaggggc tattgtaata      1800
     tcttcagagg agcaggatca gtttgtttca aaaatcttta cagtaccaaa gccggatgga      1860
     agcagaaggc ccatcattaa tttaaaatta tttaattcat acatttctaa tcctcatttt      1920
     aaaatggaaa gtgtaaaaac agcaatgaca ttggtttcca aagattgttt tatggcagtt      1980
     atcgatttga gggatgcata tcatgccatt ccagttcatg aaagtttcca aaaatatttg      2040
     aaatttagat ggaaaggaat cctgtataaa tacacatgca ttccatttgg tttatgcctg      2100
     gctccctggc tatatacaaa gttaaataag ccaataattt cttatcttcg atctcgtggt      2160
     gtttttctag tttcatattt agacgatact ttaataatcg ggaagacaga atctgaatgt      2220
     aaaaagtttt taaaactggc attaaatttg tttcttcgac tcggcttagt tgtaaatgag      2280
     gagaaatcac aattaaggcc attaaaacag gtccgatttc taggatttat tatagattca      2340
     gaagcaatgc gcatggtact tcctcaggac aaatgcgaca caataataac gaagtgtaga      2400
     tcagtttctg aaattaacgt tacatcaatt caaagggttg cagaattggt aggcagttta      2460
     gttgcagcgt cacctgcgac gaagtacgga atgttgtaca caagacaatt ggagatcgag      2520
     aagtcaaagg ctttagttat tagtgggggt agatatagtg gtcaaattat tctctcgcct      2580
     atagctaaaa tggatattca atggtggatt ggtaatataa aatccgaata tcgttcatta      2640
     tcccaattca aaccaaccaa ggtgatcttt tctgattcat ctccacttgg atggggtgca      2700
     gtttgcaacg gtcaagaagc caggggtaat ttctcacctg aagaccaact tcttcatatt      2760
     aatgtccttg aattgatggc agtattttat ggaattaatt catttgccaa aaatgcatta      2820
     aatgagaaca ttcaccttcg tgttgacagt tcaacggcaa tggcatatgt taataatttc      2880
     ggagggtgta ggtctgaaga gttgcataat gttgccaaaa agatttggat ctggtgtgag      2940
     gagcgacata ttattttgca tgctacatac atcaacacaa aagataatgt tgatgccgat      3000
     aggctctcga gaatgaaagt tgatttttca gatttttcgt taacaaagtc gtattttgaa      3060
     aaaatttgca tgaaattttg gagcccaaat gttgatctat ttgcaacata tcaaactaca      3120
     cagtgtgagc gttatttttc gtggaaacca gatccatttg cattaggtga ggatgcattc      3180
     acatttaagt gggagtcaaa gttttacgct tttccccctt ttaatttaat tggaagggtc      3240
     ataaataaga taattgaaga tcaggttgaa ggtatattgg tagttccgaa ttggtccacc      3300
     caaccttggt atccgatgtt taagaattta ataaaatcag aaattattta tctcggtcca      3360
     agtaaaaaat tgctgtttaa tcctatttcc agagmttatc atcaaatcaa caagaatttg      3420
     caattgatgg cagcagtatt atccgggagt cgatgtcagg attaaattta cccgaaagaa      3480
     ctttatcaat tttgaaagaa tctaaatcta gtggaacgtg gcgtcagtac gaatcgtcat      3540
     ggaaaaagtg gagtttattt tgtgttgcga atggttggtc agaatgggaa tcaaatgtca      3600
     ggcattgttt gttattctta actcatttat atgatagtgg actaagttat tccgcaatta      3660
     actctagcag atcagccttg tcgtcgttat tagaaaatgt ggatggctca gcactaggtc      3720
     agcataaatt ggtggtmaat tttatgaaag gcgttgctcg ccttcgtcca ccagctcagc      3780
     gttactcttc tgtttggaat cctgatactg tactttctta tttagttaca tatgacatta      3840
     atagttgtag ttttcaacaa ttaactttaa aaacaattgc attgttggct ctagctacag      3900
     ggcaacgtgt tcaaactctt gtatcgatta agataaatga tattatttgg ggtaacccta      3960
     ttcaaattag gttaacaagt attttaaaaa ccacttcttt wagtaatcca aatcccgttc      4020
     taattttacc gtattttgag aacaagcaaa tctgtccagc cctagcttta agtaagtatg      4080
     ttagtgagac acagaagctt agattgtcag accaattatt catagctact actaaaccct      4140
     ttaaaccaat ttcctcacaa actgtcagtc gctggctagt taatgtttta aatttatctg      4200
     gagttgacat taataagttt agtgcacata gtttccgtca ctcctctaca tccaaagcct      4260
     cacaactcgg cgtaaatgtg gatacaattt taaaacgagt tggatggagt gctaaatcta      4320
     aagtattcgc aaaattttat aagcgaccta ttgataatag tagtgaattt gccgagaaag      4380
     ttttgtcatt aggggactaa ttttataaat tttataaatg tggataaata aatcgtattg      4440
     gcgtcattac tgaatttgtc attctatgca atcttatttc cctcatcgac gctactttaa      4500
     agtctacsaa ctattcattg tgatgtcgaa ggtgtaggaa gatgaaataa aattggaaat      4560
     tttgtgagcc cggcgaagcc gggtgaaaca aaattgtaat tttgtgatat cttccggaac      4620
     cggaagacat cacaaccctc caacccaccc ccagtattcg agcgtcgatt cggctttaaa      4680
     actatgaggc gcacattggt ggtggtggtg catgcatggc atcagtttta ttctgcggca      4740
     gctttaaaaa ggcataaata tcgtgtttcc ccagtctctg gctcaacaac tacsaactat      4800
     tcattgtgat gtcttccggt tccggaagat atcacaaaat tacaattttg tttcacccgg      4860
     cttcgccggg ctcacaa                                                     4877
//
ID   DIRS-3_HeAr repbase;    DNA;    INV; 5186 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5186
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5283-5283 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 141/142-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           854..1756
FT                 /product="DIRS-3_HeAr_1p"
FT                 /translation="MDLENPAYPVVDLDEPVPSTSASNIPEVTQEPPPQST
FT                 AVEAGIIEIEDHQPDLDETVLQILGTDPLTTTSFGKDIQKDLATRYEHIAT
FT                 SGLTKELRKELLESHLPPANCKLIDAPSLNPEIKAAVTDVIVKRDKAMQAK
FT                 QKQLGSAIACLSEAITILLSKETKDPNILKLLVDAGRILCDCQHNDSITRR
FT                 NFILAVLKKELKDQMQLTKIDNLLFGQELADTLKTAKAINRSGAELKSVPL
FT                 PKPSSKPRPPPSTRNLNWKAPAPNRRPTGPRIAKESAPSTKQQHAHSSRGS
FT                 RPSSSRSRQ"
FT   CDS           1558..3513
FT                 /product="DIRS-3_HeAr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="AEVCSVTQTFEQTETSAFYQEFKLEGSSPEPQTDGAS
FT                 DSEGVCTFNEATARALVQRVASEQQPQPPVDTTVNFAGRLCHFFNQWSQIT
FT                 SDQTVLSWIKGYEIPFAQTPYQYNIPPSRSYSHAEVREFDQAIDNLLSIGA
FT                 VSKCQPSTGQFISSIFLVPKPNGKTRLILNLKNLNKFINTKHFKLEDLRTI
FT                 IKLISKDCFMSTIDLKDAYFLIKIHDNSKKYLRFQWKDNLYEFNVLPFGLN
FT                 TAPYVFTKIMKPVVKLLRCAGYLSTIYLDDLCLISHSYNDCYDNVTTTKQL
FT                 LCSLGFIINESKSCMIPSNACRFLGFVINSNTMEICLPPEKRQKIKNELLR
FT                 FKNIKRCKIRDFARLVGLLTSACPAIEYGWLYTKEFERCKFLSLEGDNNYE
FT                 KFMTVSPSLGPDFNWWINSIDNSVCKIKFDEHKLEIQSDASTTGWGVACAG
FT                 ETASGSWSQEERNEHINYLELMAAFIGLKIFAKKLFGCQIILRIDNTTAIS
FT                 YINRMGGVQFPHLTKLTKEIWQWCEARNLFISALYIPSVENSIADAESRRV
FT                 HPDIEWELADSAFQKIVECFGQPNIDMFASRINKKCPNYVSWHKDPDAYSI
FT                 NAFSLCWSKWYFYGFPPFSIILKTLRKIISDKARGILVVLRGHHSRGIPYL
FT                 ISS"
FT   CDS           3509..4582
FT                 /product="DIRS-3_HeAr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="APREPTFDISCFSRIDNFSFQQPSDTPADYPGCRSLV
FT                 RESLLRRSIPPASVHIMLASLSENSIKQYDTCLKKWHLFCKANNVNIYEAS
FT                 IPKIIYFFTELFQSGAQYGTLNSCRSALSLIIGHQISEDDRVKRFFKGLFR
FT                 LRPPLPKYDSTWDTSLVIEALASWVPNDNLPLDKITRKLITILALVTAHRV
FT                 QTLSKIKIENISYSSNEIHIKIPDLIKTSSVKSKQPMLVLPYFRERPEVCP
FT                 AKLLIDYLHVTEQLRHNHTFLFISTKKPHGKVGAQTLSRWIKSTLETCGID
FT                 VSIFSAHSTRHASTSRAHIMGVNLDLIRKTAGWSGTSSTFGKFYNRSVSNA
FT                 PRETFARSILIEDNS"
XX
SQ   Sequence 5186 BP; 1664 A; 986 C; 912 G; 1624 T; 0 other;
     attatgcttc agtgtttcgt tctcgagatt agattaaaac acatgtagtc acacacacaa        60
     tgtcgccact atgcactcag tttaaagaaa aaaataataa aaaaataaaa tattgtgggt       120
     agactgcact tccctataga atattccgtt cggttcgtca ttcacatttc agtgctccgc       180
     cactttgcat tattaatcgt gtcagtgtta tttttatcgg cagttttagg ttttttgtgt       240
     tcaaaatgcc gaaaagaaag cgtggtgatt caataagtta tataagaaag aaaattaaga       300
     agctagaaaa gaagttatta aaaggatgcc gcagatcttc gtccagttcc gagcagtcgt       360
     cgtcagaacc acaaggtaag gtttattctg caaattttac atggataaac gttacaacgt       420
     atgagttgca acttatccgt tttaaactcg ggttcacgat gcaacgttta gagttcatct       480
     tacccgctgt atccgtactt gtgtacatac acattaaatt ggttacctgt ttaggtattt       540
     acctaattgt agttacatat tttatcaaac tatgtttctt acttaaattg ggttcacgat       600
     gtaacgtcta cgagttcatc ttacccacgt tttgtgtttt tcgtccaagt acctctcatg       660
     acgaataaaa cattacctgt tcaggtactt acctacctac cgttaattaa ttatgataat       720
     cggaagttcc ttccattact atctacttat ttagtgcgtt atttttgcac tacaaataag       780
     ctacctaatt agttttcctt acgggaatga taattatagc aagttataaa atctgattac       840
     agatgacaaa tttatggatt tggagaatcc tgcatatcca gtagtagatc tagatgagcc       900
     ggtaccatca accagcgcat caaatatacc tgaggttaca caagaacctc ctccccaatc       960
     gacggctgtt gaagccggaa taattgagat tgaggatcat caaccggatt tagatgaaac      1020
     tgtcctgcaa atattaggaa cagatccgtt aaccactacg agttttggta aggatatcca      1080
     gaaggaccta gccactcgtt atgaacacat agccacttct ggtttgacga aagaactccg      1140
     caaggagctt ttagaatctc acttacctcc agctaactgt aagctgattg acgcaccgtc      1200
     tcttaatcct gagattaaag ctgctgtcac ggacgtcata gtgaagcggg acaaagctat      1260
     gcaggcgaaa cagaaacagt taggcagtgc tatcgcatgt ctaagtgaag ctattactat      1320
     tcttttatca aaagaaacaa aagatcctaa tatactaaaa ttactcgtgg acgcagggcg      1380
     cattttgtgc gactgccaac ataatgattc tatcactaga cgtaacttca ttcttgctgt      1440
     cttgaagaaa gaattaaaag atcagatgca actgaccaaa attgacaatc ttctttttgg      1500
     acaagagcta gccgacacat taaaaactgc caaggcaata aataggtcag gggctgagct      1560
     gaagtctgtt ccgttaccca aaccttcgag caaaccgaga cctccgcctt ctaccaggaa      1620
     tttaaactgg aaggctccag ccccgaaccg cagaccgacg gggcctcgga tagcgaagga      1680
     gtctgcacct tcaacgaagc aacagcacgc gcactcgtcc agagggtcgc gtccgagcag      1740
     cagccgcagc cgccagtaga tactacggta aattttgccg gtaggctatg tcactttttt      1800
     aatcaatggt cacaaattac atctgaccaa acagtgctgt catggataaa aggttatgaa      1860
     attccatttg cacaaactcc ttatcaatat aatataccac catctagaag ttattcacat      1920
     gcagaagtac gtgaatttga tcaagccata gataatttat tatctatagg ggccgtttca      1980
     aaatgtcaac ctagtaccgg ccaatttatt tcaagcatat ttttagtacc gaaaccaaac      2040
     ggaaaaacac gtcttattct aaatttaaaa aatttaaaca aatttattaa tacaaaacat      2100
     tttaaattag aagatcttcg aacaattata aagcttatat cgaaagattg ttttatgtca      2160
     acaattgatc ttaaagacgc atatttttta ataaaaattc acgacaattc taaaaagtat      2220
     ttaaggtttc aatggaaaga caacttatac gaattcaatg ttttaccgtt tggtctcaat      2280
     actgcgccgt atgtttttac taaaattatg aaaccagttg tcaaattact gcgttgtgct      2340
     ggttatttgt caacaatata tttagacgat ctatgtctta tatcacattc gtataacgat      2400
     tgttatgata atgtgactac tacaaaacaa ttactttgtt ctttgggctt tattattaac      2460
     gaatcaaaaa gttgtatgat tccaagtaac gcctgtagat ttttaggatt tgttataaat      2520
     tcaaacacaa tggaaatctg tttacctcct gaaaaacgtc agaagataaa aaatgaatta      2580
     ctaagattta aaaacatcaa aagatgtaaa attagagatt ttgctcgttt agtaggtctt      2640
     ttaacatctg cttgtccagc cattgaatat ggctggctat ataccaagga gtttgagaga      2700
     tgtaaatttc taagtctaga aggcgataat aattatgaga agttcatgac tgtatcacct      2760
     tctttaggtc cagatttcaa ttggtggata aattctatcg ataactccgt ctgtaaaatt      2820
     aaatttgatg aacataaatt agaaattcag tctgacgcct caactacggg atggggtgta      2880
     gcctgtgcgg gagaaacggc aagcggtagt tggagccagg aagaaagaaa tgaacatatt      2940
     aattatttag aattaatggc tgcattcatt gggcttaaaa tttttgctaa aaaattattc      3000
     ggctgtcaaa tcattctacg aattgacaat actacagcga tttcatatat taatcgcatg      3060
     ggaggcgtgc agtttccgca tttaaccaaa cttaccaaag aaatatggca atggtgtgag      3120
     gctcgtaatc tgttcatttc tgctttatat atcccatcag ttgagaacag cattgccgat      3180
     gctgaatcgc gacgagtcca ccccgacatt gaatgggaac tagcagacag tgcctttcaa      3240
     aaaattgtag aatgctttgg tcagcctaat atagatatgt ttgccagccg tataaataaa      3300
     aaatgcccta attacgtgtc atggcacaaa gaccctgacg catatagcat taacgcattt      3360
     tctttatgtt ggtctaaatg gtatttttac ggttttcccc cattctcaat cattctcaaa      3420
     acattgagaa agatcattag tgataaagct agaggaatac tagtcgtcct gcgtggccat      3480
     cacagccgtg gtatccctta tttaataagc tcctagagag ccaacctttg acatttcatg      3540
     cttctcaagg attgataatt tctcattcca gcaaccgtca gatacaccag cagattaccc      3600
     tggttgccgg agtcttgtgc gggaatctct actgagaaga agtattcctc ctgcatctgt      3660
     tcacatcatg ttggcatcac tatcggaaaa ttccatcaaa caatatgaca cttgtttgaa      3720
     gaaatggcat ttattttgta aagccaacaa tgttaatatt tatgaggcct ctatcccaaa      3780
     aattatttat ttttttactg agctttttca atccggtgct caatatggta ctctgaacag      3840
     ttgcagatcg gctttgtctt taatcattgg tcatcaaatc agtgaagatg atcgggtaaa      3900
     gagattcttc aaagggttat ttagacttcg gccaccctta cccaaatacg attcgacctg      3960
     ggatacctca ttagttatag aagcattggc tagctgggtg cctaacgata atttaccttt      4020
     agataaaatt acaaggaaat tgattactat attggcactt gttacagctc acagagttca      4080
     aaccctatca aaaattaaaa tcgagaatat tagttattca tccaatgaaa ttcatattaa      4140
     aattcctgat ttaataaaaa catccagtgt taaatcaaaa cagccaatgc ttgtcctacc      4200
     atactttagg gaaagacccg aagtatgtcc tgctaagtta ctaattgatt acttacatgt      4260
     aactgaacaa ttacgtcata atcatacctt tctctttatt agcaccaaaa aaccacatgg      4320
     taaagttggt gctcaaacat taagtaggtg gataaagagt actttagaga cctgtggaat      4380
     tgacgtttcc attttttccg ctcatagtac caggcacgcc agtacttccc gagctcatat      4440
     tatgggcgtc aatttagatt taataaggaa aactgccgga tggtctggca catcttcaac      4500
     ttttggaaaa ttttataata gatcagtttc aaatgctccc agagaaacat ttgctaggag      4560
     tatcctaatt gaggataatt cataaattat tccctatttt tgattgtata attaaataat      4620
     ctatctttaa aacgatatta agttgcgata tgaataaatc gttgttaatt gtgtaccttt      4680
     cattgttaat aaaaagatta gacaatgaat cggttttttg gttcttccaa taaaattatg      4740
     gattcacctg tcttcctatc catttcacaa tttcttcttt ctctcaatat ctacatgtgt      4800
     tttaatctaa tctcgagaac gaaacactga agcataatta atgattaaac gaacttacct      4860
     gtgagtgaag ttctatcata attatgtgag gtgtttcgtt cgaagagatt agagtcccgc      4920
     cctccctaaa tttaccctca aaattgtgaa atcgatagca tattgtctta tctctgaact      4980
     aaatgacgaa ccgaacggaa tattctatag ggaagtgcag tctacccaca atattttatt      5040
     tttttattat ttttttcttt aaactgagtg catagtggcg acattgtgtg tgtgactaca      5100
     tgtgttttaa tctaatctct tcgaacgaaa cacctcacat aattatgata gaacttcact      5160
     cacaggtaag ttcgtttaat cattaa                                           5186
//
ID   DIRS-3_MeUr repbase;    DNA;    INV; 4893 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the bear giant-skipper genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_MeUr.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4893
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 2807-2807 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 170-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..1421
FT                 /product="DIRS-3_MeUr_1p"
FT                 /translation="MSEVEQNGDNERSGSVAPDGGRAKADSSESESSSSTA
FT                 DERFASPPPNKRRKYMHQLTHDPRVDTLITQVGYISNFLAQNMPTQCANLH
FT                 TDSSQQVNRPHDQFLKIPCSDLCKSNFSLGEVNIDHDGNMLIPPANPERLE
FT                 VLEKLQQFNSPAWKGIRYKKAMQSCLSSPGFTGLKINDEFCHFNRNKDYLA
FT                 STETLMASLSNVILEQRHLIQQSLQNILDWSSTNTANLNINNLHEKFSLMF
FT                 GPGSAISKNSEITMQIICGKRAECIELRRNSILKEIGNTNLRASLQNVPPS
FT                 SEYLFSREALQPIINSLGGPQSWLNTPTYLNKKRHYNSFEQNSYRKSVNNK
FT                 PTQGKSTNFKNDRKNRVISKNSFRRNRSQDHTGTSSKQK"
FT   CDS           1243..3348
FT                 /product="DIRS-3_MeUr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="IKRDTIILLNRTHTENLLITNQHRVKVPILKMTAKIE
FT                 LFQKIPFGAIAVKTIQVPALNKNDYQKRTFKGGCLKNHTDAWAQLGANQFI
FT                 LKIISKCRIPFKTKPPLQFPYINLQKNFSTKVSPEMTRVIKDLKEKNILEP
FT                 PPIVNGGFLSKMFLVKKSDGGTRPIFDLRRLNAYVATKHFHLVSHSDVVNF
FT                 LQIKDWLVKIDLQNAYFHLPIAETHRRFLRIVYNQEILQLTALPFGLSAAP
FT                 QIFSAVTNWVAETLRARGFRVLVYLDDYLLAHQDRSVLDTQVAETLRLLET
FT                 LGWHVNYPKSSLVPSQELEYLGIIWNTLRNTMTLPNQKVQKINTMISTIQK
FT                 RSLTCTLRDTQSLLGLLNFATLTIPTGRLYCRRIQLFLRGFQKGQSRERRM
FT                 LPPLVHQDLIWWLNAVKCRSRSLRRREVTHFLTTDAADAGWGAQLNELYIS
FT                 GNWSNXQKRWHSNVKEMYAVYGAILSQQHVLKGAHILIQSDNRTLVAYVRN
FT                 EGGTRSLSLLNLTTRLLQLTERLGIMLSAHYLPGNLNGIADRLSRGRAVPE
FT                 WHLLPRAAEAIFNKWGVPDIDIFASKATAVVPNYITLDSTDGCAIFCDAFS
FT                 RPWDYQLGWLFPPPNLIPQVLAHLNLSKGMYILIAPQWDQCFWLPDLRARA
FT                 LEEPLPIKDLRKTLVDQITGRCPPQVEKLALLAWKVGGGQSKHPTGLEKRE
FT                 TY"
FT   CDS           1425..4268
FT                 /product="DIRS-3_MeUr_3p"
FT                 /translation="LSEKNIQRGMSKESYRCLGATGCKPVYSKDYFKVQNS
FT                 IQDKTSIAVSIYKSPKEFLNQSVTRDDKSDKRSQREKHTGTTTDCEWGVPI
FT                 QDVLGKKIRWWDKTNIRPPSPQCLCCYKALSPGFSLRCCKFFANQRLVSKD
FT                 RPSERLFSFTNSRNSQTFPENCLQSGNFTINSSALWPICSTTDFLSGDKLG
FT                 CGNPPCQRFSGVGLSRRLPAGSPGPICSRHSGCGNVEIARNFRMACQLPKV
FT                 QFSSLSRAGILGHHLEHSQKHYDITEPKSPENKYNDIYYTEEEPNLYIKRH
FT                 PEPFRPSKFRNIDNPHRTSLLSANTIVSERIPEGTIKGAENATSPGSPRFN
FT                 LVAKCSKMPLEIVTPKRSHTLPNHRRSRCGVGRSTKRTVYLRKLEQPSKTL
FT                 AFQCQGDVCCLRCHSKPTARIERSSHSNTIRQQDTGSIRQKRRGHTVSVSS
FT                 ESDHTTPTVDRTTGDNAFGTLPTGKFEWDCRPPIKGSSRTRVASVAPGRGG
FT                 HIQQMGRPRYRHIRFKGYSSGTKLYHSRLNRWVCNFLRRIQSSLGLSTRLV
FT                 VPTSQSDPTSTGSLEPLKGNVHFNSTPVGPMFLAPRPPGQSSGGTTTHQGS
FT                 AEDLSRSDYRPLSTSGREAGSPGMESWGWTEQTSHWTREERDLLKRSWRDS
FT                 TLCTYKAPIKRWISWCNINNIDPKLPTGNDVARFLAYLFLQCKLAYCTILL
FT                 HKSAVTTFCGTSTENISKNFFVHQILRAISLARPQVQRPPVFDIKLLFDWL
FT                 QATPCNGTFFDISRRTALILLLASGRRIHDLTLLEMSREHLQEESDRIILW
FT                 PRFGSKTDTGTYRQSGWSVINHPNIHICPVRHIKQLIGLSSERRSQNNISS
FT                 LFISITGKVKPASRTNIANWLKTIFRELDINAPPGNIRSAVASRGWLENRP
FT                 VEEILKRGNWKSAQTFKKYYCRQVQRSDPMTSRADLLFNNFESI"
XX
SQ   Sequence 4893 BP; 1542 A; 993 C; 966 G; 1391 T; 1 other;
     ttatgtgtct ttctaaaaca cagtgttggg tgaagaagca gtctatgatt cttggttttg        60
     tttatctatg gtattaaaaa acttaccaaa tattttctga ttagcgggag tttaccttat       120
     cttgacatca gctggcgcca ctttctatga aattggcgtt tccaaacctg tttggcttca       180
     tagcgtttgt gatttttggc gcgttaacat ataaggtttt tccgattggc aaaagttgtg       240
     tagaatagtt gataaaacac agtgtatttg ttaaaatgag tgaagtggag caaaatggtg       300
     ataatgagag gtcgggttct gttgctccgg acgggggacg agctaaagcc gattcgtcag       360
     agtcggaatc ctcatcatcc acggcggatg agcgttttgc gtcacctcct ccaaacaaga       420
     gacgtaagta catgcaccag ttaactcatg atccacgagt agacacttta atcacccagg       480
     tgggctacat ttcaaatttt ttagctcaaa acatgcctac gcagtgtgcg aacttgcata       540
     ccgatagttc acaacaggtg aatagaccgc atgatcagtt tttaaagatt ccatgctcag       600
     atttatgtaa atcaaacttt tcgttaggcg aggttaacat cgatcatgat gggaatatgc       660
     ttatacctcc cgctaatccg gagcgcctag aggtattaga gaaattacaa caatttaatt       720
     ctccagcctg gaagggcatt agatacaaaa aagcaatgca atcttgctta tcttctcccg       780
     ggtttacggg tttaaaaatt aatgacgagt tttgtcattt caatagaaat aaagattatt       840
     tagcttcgac tgagactctg atggctagcc tatcaaatgt cattttggaa cagagacact       900
     tgattcagca atcgttacaa aatattttag attggtcttc tacaaacacg gccaatttaa       960
     acatcaataa cctacacgaa aagttttccc ttatgtttgg tccaggttct gccatctcta      1020
     aaaattcgga aataacaatg cagattattt gtggcaagag agcagagtgc atagagttaa      1080
     gacgaaattc cattcttaaa gagataggaa atactaatct ccgggcatct ttacaaaatg      1140
     ttcccccgag ttcagaatat ttgtttagtc gagaagctct gcaaccgatt attaactcct      1200
     taggtggacc acagtcctgg ttaaatactc ctacctattt aaataaaaag agacactata      1260
     attcttttga acagaactca tacagaaaat ctgttaataa caaaccaaca cagggtaaaa      1320
     gtaccaattt taaaaatgac cgcaaaaata gagttatttc aaaaaattcc tttcggcgca      1380
     atcgcagtca agaccataca ggtaccagct ctaaacaaaa atgactatca gaaaagaaca      1440
     ttcaaagggg gatgtctaaa gaatcataca gatgcttggg cgcaactggg tgcaaaccag      1500
     tttattctaa agattatttc aaagtgcaga attccattca agacaaaacc tccattgcag      1560
     tttccatata taaatctcca aaagaatttc tcaaccaaag tgtcaccaga gatgacaaga      1620
     gtgataaaag atctcaaaga gaaaaacata ctggaaccac caccgattgt gaatgggggg      1680
     ttcctatcca agatgttctt ggtaaaaaaa tcagatggtg ggacaagacc aatattcgac      1740
     ctccgtcgcc tcaatgctta tgttgctaca aagcactttc acctggtttc tcactcagat      1800
     gttgtaaatt ttttgcaaat caaagactgg ttagtaaaga tcgaccttca gaacgcctat      1860
     tttcatttac caatagcaga aactcacaga cgtttcctga gaattgttta caatcaggaa      1920
     attttacaat taacagctct gccctttggc ctatctgcag caccacagat tttctcagcg      1980
     gtgacaaatt gggttgcgga aaccctccgt gccagaggtt ttcgggtgtt ggtctatcta      2040
     gacgactacc tgctggctca ccaggaccga tctgttctag acactcaggt tgcggaaacg      2100
     ttgagattgc tagaaacttt aggatggcat gtcaactacc caaagtccag tttagttccc      2160
     tctcaagagc tggaatactt gggcatcatt tggaacactc tcagaaacac tatgacatta      2220
     ccgaaccaaa aagtccagaa aataaataca atgatatcta ctatacagaa gaggagccta      2280
     acttgtacat taagagacac ccagagcctt ttaggccttc taaatttcgc aacattgaca      2340
     atccccacag gacgtcttta ctgtcggcga atacaattgt ttctgagagg attccagaag      2400
     ggacaatcaa gggagcggag aatgctacct cccctggttc accaagattt aatctggtgg      2460
     ctaaatgcag taaaatgccg ctcgagatcg ttacgccgaa gagaagtcac acacttccta      2520
     accaccgacg cagcagatgc ggggtggggc gctcaactaa acgaactgta tatctcagga      2580
     aactggagca accktcaaaa acgttggcat tccaatgtca aggagatgta tgctgtctac      2640
     ggtgccattc taagccaaca gcacgtattg aaaggagctc acattctaat acaatccgac      2700
     aacaggacac tggtagcata cgtcagaaac gaagggggca cacggtctct gtctcttctg      2760
     aatctgacca cacgactcct acagttgacc gaacgactgg ggataatgct ttcggcacat      2820
     tacctaccgg gaaatttgaa tgggattgca gaccgcctat caaggggtcg agccgtaccc      2880
     gagtggcatc tgttgccccg ggccgcggag gccatattca acaaatgggg cgtcccagat      2940
     atagacatat tcgcttcaaa ggctacagca gtggtaccaa actatatcac tctagactca      3000
     acagatgggt gtgcaatttt ttgcgacgca ttcagtcgtc cctgggacta tcaactaggt      3060
     tggttgttcc cacctcccaa tctgatccca caagtactgg ctcacttgaa cctctcaaag      3120
     ggaatgtaca ttttaatagc accccagtgg gaccaatgtt tttggctccc agacctccgg      3180
     gccagagctc tggaggaacc actacccatc aaggatctgc ggaagacctt agtagatcag      3240
     attacaggcc gttgtccacc tcaggtagag aagctggctc tcctggcatg gaaagttggg      3300
     ggtggacaga gcaaacatcc cactggacta gagaagagag agacttatta aagcgtagtt      3360
     ggcgtgattc aaccttatgc acatataagg ctcctattaa aagatggatt tcttggtgta      3420
     acattaataa tatagatccg aaattaccca ctggtaatga tgtagcaaga tttttggcct      3480
     acctcttttt acaatgtaaa cttgcttatt gcacaatact tttgcacaag tcagctgtga      3540
     caaccttctg tggcacatca acagaaaata tttcaaaaaa tttctttgta catcagatac      3600
     tcagggctat ttcactagct agaccacaag tacagagacc tcctgttttt gacatcaaat      3660
     tattgtttga ttggctccaa gctacacctt gcaatggtac attttttgat atttctcgac      3720
     gaactgccct aattctttta cttgcttcag ggcgtagaat tcatgacctg actctattag      3780
     aaatgtctag agaacatcta caagaggaat ctgataggat catactttgg ccacgattcg      3840
     gatctaaaac ggatacgggt acctacagac aatcaggctg gtctgttatt aatcacccta      3900
     atattcatat atgtccagta aggcatatta aacaacttat tggactttcg agtgagagaa      3960
     gatctcagaa taatatttct agtttgttta tttctattac tggcaaagtt aaaccagcat      4020
     ccaggacaaa tattgcaaat tggttaaaga ccattttcag agaacttgat attaatgctc      4080
     ctccaggaaa tatcaggtct gctgtagcat cccgaggttg gttagaaaac agaccagtgg      4140
     aagaaatcct taagagagga aattggaaga gtgcccaaac ttttaaaaag tattactgtc      4200
     gtcaggtcca aaggagtgat cctatgactt ctcgggctga tttattattt aataattttg      4260
     aaagtattta atgttgcaca aattatattg ttatagtaag aatcactaat aaatatatga      4320
     ttgtttttat tacaagatta aaaatgtgga tgtttgttta taatacatag caggcatact      4380
     ttatgacata attaatttta gaaaagctaa tgttttaatt tttatttaag ttatgtttta      4440
     atttttattt gttaacaagg gttgcttaat aagataagtt gaaactactt gttttgtttt      4500
     tatttacagt gtcttcttct tcttaataaa acataatttt agatcaatca tagcgtttgt      4560
     gcttgacacc agcagataac aaacaggtct tcacccaaca ctgtgtttta gaaagacaca      4620
     taatataact gttttgcatt acaacaaaac aattattatg tgtcggataa aacacagtgt      4680
     tgcggcaagg ccttgctggt gattgaagac tatgaagcca aacaggtttg gaaacgccaa      4740
     tttcatagaa agtggcgcca gctgatgtca agataaggta aactcccgct aatcagaaaa      4800
     tatttggtaa gttttttaat accatagata aacaaaacca agaatcatag actgcttctt      4860
     cacccaacac tgtgttttat ccgacacata ata                                   4893
//
ID   DIRS-3_MSe  repbase;    DNA;    INV; 5913 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5913
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 549-549 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 168-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           712..2445
FT                 /product="DIRS-3_MSe_1p"
FT                 /translation="MAELTSMGALAAEPWENNEKGLLAVIASLDENFPVNW
FT                 RDWKVFNYTFEELFGGSQVPPAIEAKLRFAIPTVDLARAFNPSATSLSERS
FT                 YRAIRASFLKWPLGRALLYAPHSLMEKIHSPAYEVFMSTVKELKPKLAKRR
FT                 EASQELERLSPLTSLGPSTGTKRSIESPTEVYHSQAKRSSYANVSSSPIQS
FT                 ESRVPAQGSSDHLLATVLNQQMLLFNKLLSMQSEQNENIKTIILNQQVSTA
FT                 SSAHQPCEGSLNKSYDSLPDSTQSDEEMDEPAQDGGDNPHTPDIQGSKEAE
FT                 LRKKIADAQRELAVLAEDKNSNTTAFDFTPATTEQEPKIARADPIAVKHGL
FT                 NCQRLGDSSWCNVRYSEIQKHFQATPVFTSLKTNNLLAEFTPNWKSVEILE
FT                 KFDLTLGAITNGLIQQRIIFQNVLESLPTEVKNIVGRDFVAANSGFRKNSD
FT                 ALLQYVCGRRAEVIKQRREVYKPSSKSFREILHDIPPSGTHLFEDKSLTDV
FT                 IKELGGVQKLFPSKKKTYPNKKPIPQGSKPKSSQNVPYRFRDTRNTTKRNI
FT                 PYTRDTEGKGRQQRTFPSKTHQSKKDRGGRK"
FT   CDS           2213..4312
FT                 /product="DIRS-3_MSe_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="EVCKNCFLARKRHTLTKNRYLKGLNLKALKMCPIVFA
FT                 TREIPRKEIYPIPEIQKGRDVNKELFPLKHTKAKRIEAVESDYFSAGRLAK
FT                 FVHRWKGATENLLKILNGYRIPFKSVPPITKFSRVNAQRYRTRTSAAMSVE
FT                 IKKMLQSGALQISTHQSGFLSTMFLRKKTDGGNRPIFNLKRLNDYVLTPKF
FT                 RLLNHHQIPEHLREKDYLMKIDLSQAYFHVPIDQNHRRYLSLSHQGKIYEM
FT                 TCLPFGLASAPSAFAKITNWVAQQLRQKGFRVIVYLDDFLLMHENPVILEQ
FT                 QTTVATEYLKNLGWQINQAKSSTIPSTTIEYLGITWNTSQNTKGLSIPKIQ
FT                 QLQKCIQDLRRKAQWSWYDAKVILGRLNFASFTVPLGRLHCRQLQKSARLL
FT                 SQTRPHRKHYIPDAALEQLKWWIENLHKRSPIHYPGPSIFVTTDAAERGWG
FT                 AIANGRHLWGKWTHCQRKWHSNLKELWAVHEVLQSLGAEIRHRTIMVQSDN
FT                 RTTVAYINKQGGTRSARLLKATTQILELCDLMDCHLIARYIPGIYNGIADR
FT                 LSREKALPEWHLKETIVTWIFQKYGIPDIDLFATKKSAVVSSYVSEDSTDT
FT                 GSQFCDAFSRIWKYNLGWIFPPPALIPQILRHLQKSEGRYILVAPNWSRVF
FT                 WKPELEQMKEKPPLLIPNLRENLIDLRTNCAPQGVERLELAVWLVRAGRSR
FT                 "
FT   CDS           2449..5280
FT                 /product="DIRS-3_MSe_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="LLFCGASSQICTSVERRNRKPFKNIKWLQNPIQECSS
FT                 DNKIFSSKRPKISYQNISGNVGRDKENATIRCPANQYTPIGIPIHYVSKKE
FT                 DRWRESPYIQSEKAQRLCPYAKISLTKSPSDPRTFERKGLPDEDRPFTGIF
FT                 SRAHRPEPPSVSVTLAPREDIRDDVSTFRPSKRPFSICKNYELGSTTTSSE
FT                 RLSSDSVSGRFSANARKPRNSRTANDRRYGISEEPGLADQSSEIIDHPFNH
FT                 HRISRHHLEHKSEHEGVINSKNPTVAEMYSRPTEESSMELVRRQSDFRKIE
FT                 LRIIHGSLRATSLPTITEVCSSPVTNSTPSETLYPRCGPRAAQMVDRESAQ
FT                 EVTDPLSWPVNLCHDGCSRKRLGCHSKWPSSMGKVDTLSKKMAQQPKRIVG
FT                 RTRSPSKFGCRNSPQDNNGTIGQSNDCGLHKQTRGHQISKIIKSHDTNLRI
FT                 MRFDGLSFNSSIHSGDIQRNSGQAVERKGLARMAPQGNNSNLDISEIRNSR
FT                 YRSLRHEEVSSRFELCQRRLDRHREPILRCIQQNLEIQSGVDIPTASLNSA
FT                 NTSPPTKVGGTIYSSSAQLEQSLLETRTGANERETSAVDSESSRKPYRSPH
FT                 ELCSSRCRTLGIGGMVGTGWAKQIANWSESEIKLLESSWRSSSLKTYRPIW
FT                 SRWCSWAQSNRIPADDPSPHDLARYLCYLYRVVKLAPKTIAVHKSVVANFG
FT                 NPLRSDELSAHPLVKHVLKGVFAETPPVKKSISWTIEDLLAFLSTYQFDHD
FT                 NLFAVSRHTCVLLLLATGRRVHDLTLLSIGNDHFEDRGNEIILWPKFGSKT
FT                 DSVSYKQSGWLLKKGENNFDGPLDIIFWIKKTILITNMRRNMACNDSLFIT
FT                 TRGKVKNASRTVIAGWIKTLFKEAGISASAGSFRAVVATNNWVGNYCNIDE
FT                 ILKRGNWRSKNTFFRHYFREIKPQPNRNPNPLSNSFTPVM"
XX
SQ   Sequence 5913 BP; 1843 A; 1330 C; 1262 G; 1476 T; 2 other;
     tatttaggtg ttcgagccta tgcttgaacc acattgagat taacgttcca atattcattg        60
     tcaacatctt caacatcctc tatctcactc actcattagg tgcatccgtg acgttgtaac       120
     ctgccataac tatacctgtc cttgtcacat wcttggtgag cagcgcgcgg cgggctcttc       180
     cttcagtacg ctttcaatat tcgttgaatc aacacgtgta agtatcttct tctcccgttc       240
     ggcgctttta agcccaacga cgatatctta ccgctcggcg cctcaaggcc cagcgatgaa       300
     tgagctatgt aatacttcat agaaatacct tatagaaagt atgttcgtat cgagacaatg       360
     agcaaaacga cagtttgagg cgccaatcgt tcggattgag acgaccgcct cctcgaatga       420
     gtcgaccgtc gtctcaattg ggacgaccgt ttcacctcgg ttatgacgac ggtcgttcga       480
     ttgagatggc ggtcgccccg atttggacga ccgccgcccc ggcccagacg ccagtcgcac       540
     tgagtgtagt ctcaagtaag acagtatgtc gtctcatctg agtcgtcaca cgggtcgcat       600
     caaattgaat gtcgcctctt tctaagcgac aattgtcgta ccaattgagg tgtcctttct       660
     ttctttcttt ctagtaccta tgcatgaaat agcgctttca cttccagaac catggcagag       720
     ctaacgtcaa tgggtgctct tgccgccgaa ccttgggaaa acaatgaaaa gggtttattg       780
     gcagttattg cctcgttgga tgaaaacttt ccggttaatt ggagagattg gaaggtcttt       840
     aattacactt ttgaggaact gttcggagga agtcaagtmc caccggcaat agaagcaaaa       900
     ctcagatttg ccatccccac agtggatttg gcacgggctt tcaatccttc cgctacatca       960
     ctatccgagc ggtcatacag agcgataagg gcttctttct tgaaatggcc gttaggaaga      1020
     gctctactct atgcgccaca cagtctaatg gagaagattc attcgccagc ctacgaggtc      1080
     tttatgagta ccgtgaagga actaaaacca aaactcgcca aaagacggga ggcgtcacag      1140
     gaattggagc gcctcagccc actaactagt ctggggcctt ccacgggtac gaaacgctca      1200
     attgaatcgc ctacagaagt gtatcatagc caagcaaaac gttcctctta tgcaaatgtc      1260
     tcaagttcac ctattcaatc agaatctcga gtgccagcac aaggtagcag cgaccatctg      1320
     cttgctactg ttctgaacca acaaatgcta ttatttaaca aattgctcag catgcaatca      1380
     gaacaaaatg agaacattaa aactatcatt ctcaatcaac aagtgagcac cgcgtcgagc      1440
     gcacaccaac cctgtgaagg cagccttaat aagtcctacg actctcttcc agacagtaca      1500
     caatctgatg aagaaatgga tgagccagcc caagatggtg gagacaatcc tcatacacca      1560
     gatattcagg gttccaaaga agctgagcta cggaaaaaga ttgccgatgc acagagagaa      1620
     cttgcagtat tagcagaaga taaaaattct aataccactg cttttgactt tacgccagcc      1680
     accacagaac aagaacctaa gatcgcacga gcagacccaa tagcagtaaa gcatggtttg      1740
     aattgccaaa ggttaggcga cagtagctgg tgtaatgtac gatactcaga gattcaaaag      1800
     cattttcagg caactcctgt atttacttcc ttaaaaacaa acaatctttt agctgaattt      1860
     actccgaatt ggaaatcagt agagatttta gagaaattcg atctaacttt aggggctata      1920
     acaaacggac ttattcagca gaggattata ttccaaaacg ttttggagag cttaccaaca      1980
     gaggttaaga atattgtggg ccgagatttt gtagcagcaa attctggatt tagaaagaat      2040
     tcagatgctc ttctgcagta tgtgtgcggg cggcgtgcag aagtaataaa acaaagaagg      2100
     gaggtctaca aaccttctag caaatctttc cgagaaattc ttcatgacat tcctccttcg      2160
     gggacccact tattcgaaga caaatctctt acggatgtta taaaagaatt aggaggtgtg      2220
     caaaaattgt ttcctagcaa gaaaaagaca taccctaaca aaaaaccgat acctcaaggg      2280
     tctaaaccta aaagctctca aaatgtgccc tatcgttttc gcgacacgcg aaataccacg      2340
     aaaagaaata taccctatac cagagataca gaagggaagg gacgtcaaca aagaactttt      2400
     ccctctaaaa cacaccaaag caaaaaggat agaggcggtc gaaagtgact acttttctgc      2460
     ggggcgtcta gccaaatttg tacatcggtg gaaaggcgca accgaaaacc ttttaaaaat      2520
     attaaatggc tacagaatcc cattcaagag tgttcctccg ataacaaaat tttctcgagt      2580
     aaacgcccaa agatatcgta ccagaacatc agcggcaatg tcggtagaga taaagaaaat      2640
     gctacaatcc ggtgccctgc aaatcagtac acaccaatcg ggattcctat ccactatgtt      2700
     tctaagaaag aagaccgatg gagggaatcg ccctatattc aatctgaaaa ggctcaacga      2760
     ttatgtcctt acgccaaaat ttcgcttact aaatcaccat cagatcccag aacatttgag      2820
     agaaaaggat tacctgatga agatcgacct ttcacaggca tattttcacg tgcccatcga      2880
     ccagaaccac cgtcggtatc tgtcactctc gcaccaaggg aagatatacg agatgacgtg      2940
     tctacctttc ggcctagcaa gcgccccttc agcatttgca aaaattacga actgggtagc      3000
     acaacaactt cgtcagaaag gctttcgagt gatagtgtat ctggacgatt ttctgctaat      3060
     gcacgaaaac cccgtaattc tagaacagca aacgaccgtc gctacggaat atctgaagaa      3120
     cctgggctgg cagatcaatc aagcgaaatc atcgaccatc ccttcaacca ccatagaata      3180
     tctaggcatc acttggaaca caagtcagaa cacgaagggg ttatcaattc caaaaatcca      3240
     acagttgcag aaatgtattc aagacctacg gaggaaagct caatggagct ggtacgacgc      3300
     caaagtgatt ttaggaagat tgaacttcgc atcattcacg gttcccttag ggcgacttca      3360
     ttgccgacaa ttacagaagt ctgctcgtct cctgtcacaa actcgacccc atcggaaaca      3420
     ttatatccca gatgcggccc tagagcagct caaatggtgg atagagaatc tgcacaagag      3480
     gtcaccgatc cattatcctg gcccgtcaat ctttgtcacg acggatgcag cagaaagagg      3540
     ttggggtgcc atagcaaatg gccgtcatct atggggaaag tggacacatt gtcaaagaaa      3600
     atggcacagc aacctaaaag aattgtgggc cgtacacgaa gtccttcaaa gtttgggtgc      3660
     cgaaattcgc cacaggacaa taatggtaca atcggacaat cgaacgactg tggcttacat      3720
     aaacaaacaa gggggcacca gatcagcaag attattaaaa gccacgacac aaatcttaga      3780
     attatgcgat ttgatggatt gtcatttaat agctcgatac attccgggga tatacaacgg      3840
     aatagcggac aggctgtcga gagaaaaggc cttgccagaa tggcacctca aggaaacaat      3900
     agtaacctgg atatttcaga aatacggaat tccagatata gatctcttcg ccacgaagaa      3960
     gtcagcagtc gtttcgagtt atgtcagcga agactcgaca gacacaggga gccaattctg      4020
     cgatgcattc agcagaattt ggaaatacaa tctggggtgg atattcccac cgccagcctt      4080
     aattccgcaa atacttcgcc acctacaaaa gtcggaggga cgatatattc tagtagcgcc      4140
     caactggagc agagtcttct ggaaaccaga actggagcaa atgaaagaga aacctccgct      4200
     gttgattccg aatcttcgcg aaaaccttat agatctccgc acgaattgtg ctcctcaagg      4260
     tgtagaacgc ttggaattgg cggtatggtt ggtacgggct gggcgaagca gatagcaaac      4320
     tggtctgaaa gtgaaataaa gctattggaa tcatcttgga ggtcgtcatc cttaaaaacg      4380
     tatagaccaa tctggtcaag atggtgcagc tgggcccaat caaacagaat acctgcagat      4440
     gatcccagcc ctcacgattt agctagatac ctatgctacc tctacagagt cgtaaaatta      4500
     gcgcctaaga ccatagccgt tcacaagtca gttgtagcaa acttcggaaa tcccttaaga      4560
     tctgacgagc tcagcgccca tcctctagta aagcacgtat taaagggcgt cttcgctgaa      4620
     acccctccgg ttaaaaagtc aatttcgtgg actatagaag atctcctagc gtttttaagt      4680
     acctaccaat ttgatcacga caatctcttt gcagtctcaa ggcacacttg cgtgcttctc      4740
     ctgctcgcta ccggcagaag agtccatgac ttaacacttt tatcgatagg aaatgatcac      4800
     ttcgaagata ggggaaatga aatcatactc tggcctaaat tcgggtctaa aactgattcg      4860
     gtttcatata aacaatcagg ctggttgctg aagaaaggag aaaataattt tgatgggcca      4920
     cttgatatta tcttctggat taagaaaacc attttaataa cgaatatgcg ccgtaacatg      4980
     gcgtgtaatg attctctgtt cattaccaca agaggaaaag tgaagaatgc ttcccgaacc      5040
     gtgatcgcgg gatggataaa aacgttattt aaagaagcag gaatatctgc atctgcaggt      5100
     agctttagag cagttgttgc aaccaacaac tgggttggta attattgcaa tattgatgaa      5160
     attctaaaaa ggggcaattg gcggtctaaa aatacattct ttcggcatta cttcagagaa      5220
     ataaaaccgc aacctaatag gaacccaaat cctttaagta attcctttac accagtgatg      5280
     taggcttatt attaaatata agatttaatt gattttatga aaagcttatt ttgaggtctt      5340
     aattacatat tgataatata tcattctggt aattatgtaa ggtatctttt taattgttca      5400
     agcaaattga ggatattatc cttgaataaa tatctttcac aatctctgtc tttctcttca      5460
     cacgaaaata ataatagtca cagtacgctt agctctagtc ccatattgaa atcttacata      5520
     ttatggacta gtcggacagc gcgccggcag ataataaaca cgtctcaatg tggttcaagc      5580
     ataggctcga acacctaaat agaaccgttt ttcccccgaa gggtaaaaaa acggatattt      5640
     aggtttcagc cgtagcttga accacaccta aggccttgcc ggctcaaggt actgaaggaa      5700
     gagcccgccg cgcgctgctc accaagtatg tgacaaggac aggtatagtt atggcaggtt      5760
     acaacgtcac gaatgcacct aatgagtgag tgagatagag gatgttgaag atgttgacaa      5820
     tgaatattgg aacgttaatc tcaatgtggt tcaagctacg gctgaaacct aaatatccgt      5880
     ttttttaccc ttcgggggaa aaacggttct att                                   5913
//
ID   DIRS-3_SiOr repbase;    DNA;    INV; 5576 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5576
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 6-6 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 152-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1247..2047
FT                 /product="DIRS-3_SiOr_1p"
FT                 /translation="MEKGELSLQERGGEPDIQNNPLPVPDNDALDLLGSKR
FT                 KADISYAEDIHIEIASRWEDFLKSGIERDEKKKIMDIYPIVGNCKLLAAPR
FT                 LNVEIQSTMEESVLRQDAFLGRTQDELGAAISALAIPLDKLFSQPSEESKD
FT                 LLKHIANAAKLLTNVHHSLSSHRRHIILPKVNPTIRKSIEQFPIDELLFGQ
FT                 KFADQLKSTKELKKTSLELKIANPKQKFQSKNYKRPWNKSKFKQKGKYQDQ
FT                 KTIRKDQRSRLVRRKPETYTPSRFQP"
FT   CDS           1801..3966
FT                 /product="DIRS-3_SiOr_2p"
FT                 /translation="TPLWTKICRSVEIYERVKENLLGIKDCQPETEIPVKK
FT                 LQAPLEQIEIQTEREVSGPEDNQEGSEKPPCASETGNLHTIPIPTLEVDIA
FT                 SQKYAGRLKSFINEWRTLTDNPLVLSWIQGLKLQFLQQPFQNSCKNMLKNP
FT                 GKNILDSLKCLLSVGAVTPCRHTKNQFISPYFLREKSNGQFRFILNLKHLN
FT                 EFCFNPPHFKLEDYRTVLKLLYPNCLFTCIDLKDAYFLIPIHSEHRKFLRF
FT                 VFENQLYQFNCLPFGLSIAPYIFTKIMKPILMKLRTEGIICICYLDDILII
FT                 SSSIKQGVEDVNKTVSILQQLGFIVNFNKSQLTPSTECTYLGFIFNSENMT
FT                 VSLPQNKRQKIIENINKMLSQSRCTIREFAKLIGVLTAACPAVRYGWLYTK
FT                 ILEREKINFLKTKHSYNKYMLLSAKVKTELRWWCNNVKHSFNPIMKGTYDI
FT                 VIFSDASKIGWGASCNGVNIHGFWNSQEIQMHINYLELLAAYNALKSFTKH
FT                 QVNISILFRIDNVTAISFINKMGGVKYKKLHKVTKDIWQFCEKKRFSLFAS
FT                 YINTKDNIEADLESRCKKIDTEYELSNIAFQKICNKFGYPEIDLFATELNK
FT                 KCKRYISWKPDPGSVDVDSFTISWTNYFFYAFPPFSMILKMLNKIVTDCAT
FT                 GIVVVPLWPAQPWFPLFRNLMIAKPIYFKPRRNLILSPFRKPHPLWRDTTL
FT                 VAAHLSGLRFRKGRSLKKPFKE"
FT   CDS           3834..4886
FT                 /product="DIRS-3_SiOr_3p"
FT                 /translation="TTKEPYFISFQKTTSIMERHYPGSSSFIRVAFSKRSF
FT                 PEEAIQGIVSSVSESTMKHYDGWFKRWWVFCIEAHHDPWVYSLSHFINFLN
FT                 KQAQSGKSFSAVNSCKAALSFILPISSTDEPLIKRYLKGIYNQNPPKPKYD
FT                 TTWDPYPVLSFLEKLVPLDRLTLEQLSYKLVTLLALISAHRVQTLSKIKIH
FT                 NIIRFEDRLEILIPDRIKSSGKNRQQPVLKIPFFLDKPELCLATCILFYIE
FT                 KTKSFREEGYDTLILTHKRPFHAASSQTISRWIKHTLKMSGISTEQYSGHS
FT                 VRHAATSAANRGGVSVEEIRKRAGWTEKSATFNRFYNRPLAVPPDLFARGL
FT                 LKGSNVNS"
XX
SQ   Sequence 5576 BP; 1916 A; 998 C; 993 G; 1669 T; 0 other;
     attacacttc acagttttgt cctcgtatta cataatttct tacacataga gtattagtct        60
     cgtgtagcga gatccgtacg acaagtttaa atattagaaa aaaaaaacgc acatccctac       120
     tctactgccc atccctagtc tcctgtcatc gtagcgtcat tcttagtttt gtcgttgcga       180
     aatacgtacg atcgggagac gcagtgataa attagtgaaa tttagtgata atggggcgct       240
     cgaaaaaccg caaaagggac aagaaatcaa agaagagact gctggataaa ctacggagag       300
     cactggaatc atcttcaagc agtagtaagt agaatttgaa gaaatatttc tcgaagaaca       360
     gggcacaatt ccgaagtttt acaacataat tatgtgttgt gggcaaagta attaataacg       420
     cccaaaaagt cgaaactgtt ttcggctcta tcggttaaga taaacacaaa caccaccatt       480
     cttcattttg ttatatcccg tatgactggt tgtctataat aatgggttct acacagtggt       540
     caaccagatg acaaaagagg tacataaact acatactggt ccagtgatca aattaaaaaa       600
     aaaaaaatgt aaaattgaat gttgttttat tatatgcact cagatgtctg agactgcata       660
     ttaatattac atatgcacgt agtgaggctc aaaaacttcg gccaaaaatg ctatatagta       720
     attaaaagtg aacgtgctct atgatatgca ctcagatgtc tgagtctgca tatcaaaatt       780
     acataggcat catttttaaa ttgccttttt gtagtgtggc tccgtagcca tacacttctg       840
     tcaaaaatgc tatttagcaa caaaaagtga atattgctgt ataatatgca ctcagatgtc       900
     tgagtttgca tacgaatatt ttatatctct ttatttttaa actgcttatt cgtattgggg       960
     ctctgtagcc acacatttct gctaaatatg caatttagca gtagaaagtg attgttactt      1020
     cataagataa actcagatgt ctgaggctac atatatttat gggcatatta ttttatggca      1080
     tattagtgaa gctcagtagc ttcaaacaat cactggttca aatacaaccc tgacgcagtt      1140
     gtcatagggt ttattataaa aatctagtaa acaaagagat ataggctcgg atacttcatc      1200
     gagttcgaca tcctcctcca gtgaggaggc gcctttagac tgtgatatgg aaaagggtga      1260
     gttatccctt caggaaaggg ggggagagcc cgacatccaa aataacccat tgccagtacc      1320
     agataatgac gccttagacc tgttaggctc taaacgtaag gccgatattt cttatgctga      1380
     ggatatccat atagagatag catctaggtg ggaagacttt ctaaaatctg gtattgaacg      1440
     ggatgaaaag aaaaaaatta tggatatata tccaattgta ggcaattgca aattattagc      1500
     tgcccctaga ctcaatgtgg aaatacagtc cacaatggaa gaaagcgttc tcagacaaga      1560
     cgctttctta gggcgtaccc aagacgagct aggagcggca atctcagctc tagcaatacc      1620
     tctagataag ctcttttcac agccctctga agaatccaag gatcttctaa agcatattgc      1680
     caatgcagca aaattgctga caaacgtaca ccacagctta tcaagccaca gacgacacat      1740
     tattcttcca aaagtaaacc ctaccatacg taaatccata gagcagttcc ctattgatga      1800
     actcctcttt ggacaaaaat ttgcagatca gttgaaatct acgaaagagt taaagaaaac      1860
     ctccttggaa ttaaagattg ccaacccgaa acagaaattc cagtcaaaaa actacaagcg      1920
     cccttggaac aaatcgaaat tcaaacagaa agggaagtat caggaccaga agacaatcag      1980
     gaaggatcag agaagccgcc ttgtgcgtcg gaaaccggaa acttacacac catcccgatt      2040
     ccaaccttag aggtagatat agcaagtcag aaatatgctg gtagacttaa gagttttata      2100
     aatgagtgga gaaccctaac agataatcct ctagttttaa gctggataca agggttaaaa      2160
     ctacaatttt tacaacaacc ctttcaaaat agttgtaaaa atatgttgaa aaacccaggg      2220
     aaaaacattt tagatagctt aaaatgtctt ttaagtgttg gggcggtaac accatgcagg      2280
     catacaaaga accaatttat ttctccatat tttttacgag aaaaatcaaa cggacagttc      2340
     cgttttatac ttaatctgaa acatctaaat gaattttgtt tcaaccctcc acactttaaa      2400
     ctagaggact atcgcacggt gttaaagtta ttgtacccta attgcctatt tacttgtatt      2460
     gacttaaagg atgcgtattt ccttattccc atacattcag aacacagaaa atttttaaga      2520
     tttgtatttg aaaaccaact ctaccaattt aattgtctcc catttgggct aagcatagca      2580
     ccctatatat tcacaaaaat tatgaaacct attttaatga aattacgaac cgaaggcatt      2640
     atttgtatat gctatttaga tgatatctta ataataagtt catccataaa acaaggtgtt      2700
     gaagatgtaa acaaaaccgt atctatatta caacaattag gtttcatagt aaactttaat      2760
     aaaagtcaat taacaccaag cacagagtgt acatatttag gttttatttt taactcggaa      2820
     aatatgactg tttcccttcc tcaaaataaa cgtcaaaaga ttatagaaaa tataaataaa      2880
     atgttatcac agtctcgctg cacaattagg gaatttgcaa agttaatagg tgttcttaca      2940
     gctgcttgcc ctgctgttag gtatggctgg ctttacacaa aaattttgga gcgggaaaaa      3000
     attaattttc ttaaaacaaa acacagttat aataaataca tgctgcttag tgcaaaagtg      3060
     aaaaccgaac tacgttggtg gtgtaataac gtaaaacatt cttttaatcc aattatgaaa      3120
     gggacatacg acattgtaat tttttcagat gcttcaaaaa ttgggtgggg agctagctgc      3180
     aatggcgtga atattcatgg gttctggaat agccaggaaa tacaaatgca tattaattat      3240
     ctagaattat tagcagctta caatgcctta aaatctttta caaaacacca agtgaacatt      3300
     agcattctat tcagaattga taacgttaca gccatatctt ttattaacaa aatgggggga      3360
     gttaaataca aaaaattgca caaagtaact aaagacattt ggcaattttg cgaaaagaaa      3420
     cggttttcgt tgtttgcatc gtatatcaac accaaagata atatagaggc agatttagaa      3480
     tcacgatgca aaaagattga tactgaatat gaattgagta atatcgcttt tcaaaaaatt      3540
     tgtaataaat ttggctatcc tgaaattgac ttatttgcca ctgagctaaa taaaaaatgc      3600
     aaaagatata tctcttggaa gccagaccca gggtcggtgg atgtagacag ttttacaata      3660
     agctggacaa attatttttt ctatgcgttt ccaccttttt cgatgatctt aaaaatgcta      3720
     aataaaattg taacagattg cgcaacggga attgtggtag tacccttgtg gcccgcacaa      3780
     ccctggttcc cgttgtttcg aaatcttatg atagcaaaac cgatttattt taaaccacga      3840
     aggaacctta ttttatctcc tttcagaaaa ccacatccat tatggagaga cactaccctg      3900
     gtagcagctc atttatcagg gttgcgtttt cgaaaaggtc gttccctgaa gaagccattc      3960
     aaggaatagt ctcctcggta tcagagtcga ctatgaagca ttatgatggt tggttcaaaa      4020
     gatggtgggt tttttgcata gaggcacacc atgacccgtg ggtttactcc ttaagccact      4080
     tcataaattt tttaaataaa caagcgcaaa gtgggaaatc tttctcggcc gtaaacagct      4140
     gcaaagcagc tttgtctttc atacttccta tttctagcac tgatgaaccc ctcataaaaa      4200
     gatacctgaa aggaatatat aatcaaaacc caccaaaacc aaagtatgat acgacatggg      4260
     atccgtatcc tgttttatca ttcttggaaa aattagttcc tttagaccgt ttaactttag      4320
     agcaattgtc ttataaatta gtaaccctac tagcactcat ctcagcgcac agggttcaaa      4380
     ctctatcaaa aataaaaatt cacaacatca ttagatttga ggataggctg gagattctca      4440
     ttccagatag aataaaatcc agtggtaaga atcgacaaca acctgttctc aaaattccgt      4500
     tcttcttgga caagccagaa ttgtgtttgg caacttgcat actcttttac atcgaaaaaa      4560
     caaaatcatt tcgggaagaa gggtatgata cacttatttt aacacacaaa aggccttttc      4620
     atgcagcaag tagccagacc ataagcaggt ggataaaaca caccttaaaa atgagtggaa      4680
     taagcacaga gcaatattca ggacacagtg tcagacatgc tgctacgtca gctgctaaca      4740
     gagggggtgt gagtgtagag gaaattcgga agagagctgg atggacagaa aaatcagcaa      4800
     catttaacag gttttataac cgacctctag ctgtccctcc agaccttttt gctagaggat      4860
     tattgaaagg gtctaacgta aattcttgaa tgaactcttt tttcagtatt tctgaatatt      4920
     cattcatatg ttaggatata ttaatatata tcctttatta cttttatttt atttggttgc      4980
     cattattatg ttattacaat acaaaaatgt tattatattc ataagtttac cacttgaatt      5040
     taatattata ggttttaatg ttttttttta attcgaagag ttttttcgat ttaaaatggg      5100
     ttttttctct atgtaatttg atatataaaa ataaatttgt tctgcattac tcttgatagc      5160
     cttatttaag tctttaaaca gctactctat gtgtaagaaa ttatgtaata cgaggacaaa      5220
     actgtgaagt gtaattaata gatcaaatga cttaccttaa ggaaatttga tcctaattac      5280
     acgaacagtt ttgtccgaag tattacataa cccaatcccc aaatttataa gtacaattcc      5340
     cacccaaagg ctatcagagg tctttaaact gaatgacgct acgatgacag gagactaggg      5400
     atgggcagta gagtagggat gtgcgttttt tttttctaat atttaaactt gtcgtacgga      5460
     tctcgctaca cgagactaat actctatgtg taagaaatta tgtaatactt cggacaaaac      5520
     tgttcgtgta attaggatca aatttcctta aggtaagtca tttgatctat taatta          5576
//
ID   DIRS-3_SpEx repbase;    DNA;    INV; 5079 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the beet armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_SpEx.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5079
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 3796-3796 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 144-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..1699
FT                 /product="DIRS-3_SpEx_1p"
FT                 /translation="MENLDNNADRVASAVPQVRSSPRKRRVRSRSSSSSSS
FT                 SCSSFESSSSTSGGSPKISRRNKKRGGKRKRLSERKFRKLTKEVRNLHRRI
FT                 ASQDSGQRVSTNLDYDAISLMSNINENSYEQMLDVEPSSFSASGDQEFTLS
FT                 LETKLKEPSMPKAPENYIKLLCDYQHLGKSDWNEIRYSETQKLYNYSPGYT
FT                 DIEMNEEVKAFESPRHLVHADKAFAALTMCVLKQRDALQGTLQELLQWARN
FT                 SVSLSYDTLLQKVSDLFSTGDYSRCSSDLLQIICGHRAEILQMRRDCVTKQ
FT                 AKDPLMKASLKKIPPTCTNLFNAEKFTAAIEKSGGVRKCFWPLQKGNTSSA
FT                 SQADPNKFRGPSQGSKPYNKSLQGFSRNAQACQHITTHSQCVGSDPPSQGG
FT                 CSHSNPPPQGESNPRGHAAQYNSVAPNNRSNFRGRPNARQNNQSKHVRKRA
FT                 LSPQRNNDNKRRKY"
FT   CDS           1308..3569
FT                 /product="DIRS-3_SpEx_2p"
FT                 /translation="ENVFGRCKKVTRLLPRRRIQISFVAPRRGPSLTISPC
FT                 KDFLAMLRHANILPHIRNVLEVTHLRKVVAATVIHLRKVNLTLVVMLLNII
FT                 RSHRIIAVTFVAVRMLGKIINRSMCENARYLPSGITTIKDVSIDSFRAGRL
FT                 LHFADQWEQMNAPKYILKIISGYRIPFCQKPPLVYPNLVRTNLNVPESAEM
FT                 TSIINKMLVQGILERVVASPSFLSSMFLVPKGDGSSRPIFNLKTLNSYIIT
FT                 DRFKLINVNRIPDFLQPKDWLCKIDLSQAYFHVPVARSHRRFLRLVYRNEL
FT                 LEMTCLPFGLSTAPKTFATLTNWIAQTLRQRGVRIIVFLDDFLIAHQDEIK
FT                 LRGHVKNLLDTLETLGWLINYEKSIITPSKNLVFLGIYWDPWANRKRLPDE
FT                 KIPALVSKIDHLLRKERTTLKELQSLVGLLNFASFTVPKGRLNFRALLSLL
FT                 NAILKSNHRILHNLPRGAIENLIWWRQNCEQSSAIHMPPPMHFLTTDASDI
FT                 AWGARLDNLSLSGLWSEAEKDLHCNQKEMIAILRVLEDHCQLLKHKTILIQ
FT                 SDNKSVVAYLRHEGGTKSAPLLDLTCKVFQIIEQYQMHMKVFHIPGIYNAH
FT                 ADHLSRFRITPEWHLSVECTNKIFSKWGVPLIDLFASKRAHVVSNYVSLDQ
FT                 KDDQALFYDAFSRTWNYNLAWLFPPPFLIPKVLGYLNQAQGTYLLVVPRWE
FT                 RVFWRPDIKSRALAAPFTIYHLEKVLIDTTTGLPPPNVHKMTLEVWKCGGG
FT                 LGC"
FT   CDS           1703..4525
FT                 /product="DIRS-3_SpEx_3p"
FT                 /translation="LVQSRPSPAFCGPMGTNECTKVHSKNNIRVSHTLLPK
FT                 TTACLPKPCQNQPKCSRVCRNDKYHKQNASSGHSGAGGCFAKLPVIDVSCP
FT                 QRRRLESTNIQFKDTQFLHHNGSIQTDKCESHPGFFATKGLAMQNRSLSGL
FT                 FSCTCGPEPQKVSTSSLSQRIARNDLFTLWSEHSAQDLCHANQLDSPDTQA
FT                 TRCEDNSLSRRFFDSSPGRNQAPGSCKKFARYPGDVRLVDQLRKVDHHAFK
FT                 ELSLSRDLLGSMGESQTTSRRKNSCSCIENRSFAAEGAHDTQGAPKPRGST
FT                 QFCELHCSERKTQFSSASELIERNFEVESQDIAQLTSRCYRKPDMVASKLR
FT                 AIVSHTHAASYAFPHNRCIGHCLGSSPGQSLTVGSVVRSRERSPLQPKGND
FT                 SNPKSFGRSLSAPETQDDFDSERQQVGSCISTSRGRHQISSSPGLNLQGFP
FT                 NHRTISNAHESLSYTRYIQCPRRSSVEVSHNSRVASVGRMHEQNILQMGSS
FT                 TDRSFRVQASSCSVELRVTRPKRRPSPVLRCILPNVELQSSVVVPSTFSDS
FT                 QSPRLPQSSTGNVLTGSTSVGASVLATRYQIACPSSPIHNISPRESSDRHD
FT                 NRTTTAERPQNDSGSLEMWGWSGMLRSWNHNQLELLKKSWRPSTRKVYGIA
FT                 WRRWLVWCETHQISPSTPTASDLARFLSDLHLINKLSYNSILLHKSVVSTL
FT                 CNPDSSGQLSSNVLVKHVLKSIALQKSVPHGKPPIWNINDLANFLDSKRID
FT                 ENNIFQVQRHTAALLLLCSGRRIHDLTLLRVDSNNYSNQDDVVIFWPIFGS
FT                 KTDTVDYRQSGWRLISNKCNKNLDPVYWAKHSISLLENRRNAANCSNLFIN
FT                 IRGAPKPASKTLIAGWIKSLLTEAGIRASPGSIRSAVASKNWVDNYPLEEI
FT                 LARGNWRSENTFGKFYKREVRPATNRVSITALFNPVD"
XX
SQ   Sequence 5079 BP; 1511 A; 1103 C; 1030 G; 1435 T; 0 other;
     attaatttga cttgaccgtt attcgaagct tatttaattg agataggcac tacgtttccc        60
     gccttcacat ttctatatat atccatctct ttctaaaacc tcacttccgc ttggcagtgg       120
     tagggaggct cgtaaagcga gcctcgccat tttgaattca ttggcgtctc ttttcccgcc       180
     gtgatcggtc gtctcgtgac gacacgtctt agcatatcta attttttttt ataaatattc       240
     ctaacggttt tatttgaatt taaataaaat ttatattcaa tttatattaa agtttaatct       300
     ttcgatctta ataattttaa atatggaaaa tttggataat aatgctgata gagtggctag       360
     tgcggttcct caagtgcgtt cttcaccgcg gaagcggcga gttcggtcga ggagttctag       420
     cagctcgagt tcaagttgtt caagttttga aagcagttcc tcgactagcg gaggcagccc       480
     aaagataagt cgccgcaaca agaaaagggg gggcaagcgt aagcggctct ccgaacgtaa       540
     atttcggaaa ctcactaaag aagtacgaaa ccttcatcgg cgaatcgcta gccaggatag       600
     cggtcaacgc gtgagtacta atttggatta tgatgccatc tctctaatgt ctaatattaa       660
     cgaaaatagt tacgaacaaa tgcttgatgt tgaacctagt agtttcagtg caagtggtga       720
     tcaagaattt accttatctc tcgaaactaa gctaaaagag ccttctatgc caaaggctcc       780
     agaaaattat ataaaattgt tatgtgatta tcagcattta ggtaaaagtg actggaatga       840
     aatcaggtat tcagaaaccc aaaaattata taattattca ccgggttaca cagatattga       900
     aatgaatgaa gaagttaaag catttgagtc tcctcgtcat ctcgtgcatg ctgataaggc       960
     tttcgcagcc ttgaccatgt gtgtgctcaa acaaagggac gctttgcaag gaacccttca      1020
     agaactctta caatgggcaa gaaatagtgt atcgcttagt tatgacactt tacttcaaaa      1080
     agtcagtgac cttttttcca caggagatta tagtagatgt tcctcagact tactacagat      1140
     catttgtggg catcgtgctg agatccttca aatgcgacga gattgtgtca ctaaacaggc      1200
     aaaggacccg ttgatgaagg ccagtttaaa gaaaattcct ccaacgtgta ccaatttgtt      1260
     caacgcagag aagttcactg ctgctattga aaaatctggc ggagtaagaa aatgtttttg      1320
     gccgttgcaa aaaggtaaca cgtcttctgc ctcgcaggcg gatccaaata agtttcgtgg      1380
     cccctcgcag gggtccaagc cttacaataa gtccttgcaa ggattttctc gcaatgctca      1440
     ggcatgccaa catattacca cacattcgca atgtgttgga agtgacccac cttcgcaagg      1500
     tggttgcagc cacagtaatc cacctccgca aggtgaatct aaccctcgtg gtcatgctgc      1560
     tcaatataat tcggtcgcac cgaataatcg cagtaacttt cgtggccgtc cgaatgctcg      1620
     gcaaaataat caatcgaagc atgtgcgaaa acgcgcgtta tctccccagc ggaataacga      1680
     caataaaaga cgtaagtatt gactcgttca gagcaggccg tctcctgcat tttgcggacc      1740
     aatgggaaca aatgaatgca ccaaagtaca ttctaaaaat aatatccggg tatcgcatac      1800
     ccttttgcca aaaaccaccg cttgtttacc caaaccttgt cagaaccaac ctaaatgttc      1860
     cagagtctgc cgaaatgaca agtatcataa acaaaatgct agttcagggc attctggagc      1920
     gggtggttgc ttcgccaagc ttcctgtcat cgatgtttct tgtccccaaa ggcgacggct      1980
     cgagtcgacc aatattcaat ttaaagacac tcaattctta catcataacg gatcgattca      2040
     aactgataaa tgtgaatcgc atcccggatt ttttgcaacc aaaggactgg ctatgcaaaa      2100
     tcgatctctc tcaggcctat tttcatgtac ctgtggcccg gagccacaga aggtttctac      2160
     gtctagttta tcgcaacgaa ttgctagaaa tgacctgttt accctttggt ctgagcacag      2220
     cgcccaagac ctttgccacg ctaaccaatt ggatagccca gacactcagg caacgaggtg      2280
     tgaggataat agtctttctc gacgattttt tgatagctca ccaggacgaa atcaagctcc      2340
     ggggtcatgt aaaaaatttg ctcgataccc tggagacgtt aggctggttg atcaattacg      2400
     aaaagtcgat catcacgcct tcaaagaact tagtctttct agggatttat tgggatccat      2460
     gggcgaatcg caaacgactt cccgacgaaa aaattcctgc tcttgtatcg aaaatcgatc      2520
     atttgctgcg gaaggagcgc acgacactca aggagctcca aagcctcgtg ggtctactca      2580
     attttgcgag cttcactgtt ccgaaaggaa gactcaattt tcgagcgctt ctgagcttat      2640
     tgaacgcaat tttgaagtcg aatcacagga tattgcacaa cttacctcgc ggtgctatag      2700
     aaaacctgat atggtggcgt caaaattgcg agcaatcgtc agccatacac atgccgcctc      2760
     ctatgcattt cctcacaaca gatgcatcgg acattgcttg gggagctcgc ctggacaatc      2820
     tctcactgtc gggtctgtgg tcagaagccg agaaagatct ccattgcaac caaaaggaaa      2880
     tgatagcaat cctaagagtt ttggaagatc attgtcagct cctgaaacac aagacgattt      2940
     tgattcagag cgacaacaag tcggtagttg catatctacg tcacgagggc ggcaccaaat      3000
     cagctcctct cctggactta acctgcaagg ttttccaaat catagaacaa tatcaaatgc      3060
     acatgaaagt ctttcatata ccaggtatat acaatgccca cgcagatcat ctgtcgaggt      3120
     ttcgcataac tcccgagtgg catctgtcgg tagaatgcac gaacaaaata ttctccaaat      3180
     ggggagttcc actgatcgat cttttcgcgt ccaagcgagc tcatgtagtg tcgaattacg      3240
     tgtcactaga ccaaaaagac gaccaagccc tgttttacga tgcattctcc cgaacgtgga      3300
     attacaatct agcgtggttg ttccctccac cttttctgat tcccaaagtc ctaggttacc      3360
     tcaatcaagc acagggaacg tacttactgg tagtacctcg gtgggagcga gtgttttggc      3420
     gacccgatat caaatcgcgt gccctagcag ccccattcac aatatatcac ctagagaaag      3480
     ttctgatcga cacgacaaca ggactaccac cgccgaacgt ccacaaaatg actctggaag      3540
     tctggaaatg tgggggtggt ctgggatgtt aagatcctgg aatcataatc aattagagct      3600
     tcttaagaag tcgtggcgtc cctctacacg taaagtttat ggtattgctt ggaggagatg      3660
     gctagtttgg tgcgaaacgc atcagattag cccttcaact ccaacagcaa gcgatttagc      3720
     tagatttcta tcggatctcc atttaataaa taaattatca tacaattcta ttttgttaca      3780
     caaatctgtg gtttcaaccc tttgtaaccc agactcttcc ggccagttaa gttcaaacgt      3840
     cctagtaaaa catgtcttaa agtctatagc attgcagaaa tcagttcctc acggtaagcc      3900
     ccctatttgg aacataaacg acctcgctaa tttcctggac agtaaacgca tcgatgaaaa      3960
     taatattttc caagtgcaga gacatacagc tgctcttctt ctcttgtgct ccggtagaag      4020
     aatacatgat ttgactttac tcagagttga ctcaaataat tattctaatc aagatgatgt      4080
     tgtaattttt tggccgattt ttggatcgaa aactgatacg gtagattaca gacagtctgg      4140
     ttggagatta atttcaaata aatgtaataa aaatctagac ccggtctatt gggctaagca      4200
     ttcgatctcg cttctcgaaa atcgaagaaa tgctgcaaat tgtagtaatt tgtttattaa      4260
     cattagaggt gcacctaaac ctgcatcgaa aaccctaatt gcaggctgga tcaagtccct      4320
     gttaacagaa gccggtattc gggcatctcc ggggagtatt aggtcagctg ttgcctctaa      4380
     aaattgggtc gataattacc ccctcgagga aattcttgct agaggaaatt ggcgatccga      4440
     aaatacattt ggcaaatttt ataagcgcga ggttagaccc gctactaacc gtgtgtcaat      4500
     aacagcatta tttaatccag ttgattagaa ataatgtaat tacttttatc ttttgtataa      4560
     tcattataat tgatgttgta aactcaatat gatttattat ttatattttt tgtcttgatc      4620
     atcaaatata aactgtctaa tacttatgtt ttacttattc atgcctatat caatttgatc      4680
     tcaaattacc tacatattaa tacctaatat atcacattgg cgtcttcatc acttccacca      4740
     ggcgataaca aacacgtctc aattaaataa gcttcgaata acggtcaagt caaattaata      4800
     gaagcgtttt acctaccaat aaaacgcata ttaatttact taccttattc gaagcttatg      4860
     aacaagttct gcctggtaat tggactcaat gaattcaaaa tggcgaggct cgctttacga      4920
     gcctccctac cactgccaag cggaagtgag gttttagaaa gagatggata tatatagaaa      4980
     tgtgaaggcg ggaaacgtag tgcctatctc aattaaataa gcttcgaata aggtaagtaa      5040
     attaatatgc gttttattgg taggtaaaac gcttctatt                             5079
//
ID   DIRS-3_SpFr repbase;    DNA;    INV; 5197 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the fall armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_SpFr.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5197
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1646-1646 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 180-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           722..1561
FT                 /product="DIRS-3_SpFr_1p"
FT                 /translation="MQPESDELVEENQDLDPDILQLLGSDPTQNKSFGDNL
FT                 HKDLVTRWKHILTNGLSKDEKTDILKQYLPAENCTNMKAPALNPEIKSALS
FT                 DNNIKRDAYSEQKQNQMSSCISAIGKALNLVLSQKENVPQDLIKTLSDAGR
FT                 LLCDTHYRESLSRRFAIVNSLSKQKREIIKNTKIDDHLFGSNLSEHLKSSK
FT                 AISVSASELRFSTNTAKFNQSHRGQPNTSTSRYPAALNARGAPRAPAAEPR
FT                 VYPSQNRRQLPPPSAPRDHRRVPTTTRPRINYPQQSRRR"
FT   CDS           1348..3477
FT                 /product="DIRS-3_SpFr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="PVSPWATQHIYISLSCGFKRSGGTAGTSRRTASVPQP
FT                 ESASATTTVGATGPSSCTDDDTPADQLPTTISSTLTTPSQVINYIPTAGRL
FT                 RYFYHEWLHITSDKTILSWIKGYRIPFRCEPYQTNIAKSKSYTFTETNIID
FT                 ECISEMLEAGFISCCTPCEKQFISPIFTIPKRNGKHRFILNLKELNKFIIL
FT                 NHFKMEDYRTALKLIDKNYFMATIDLKDAYFLVPVAESDRVYLRFYWNSEL
FT                 FRDRLFEFNVLPFGLCTAPYMFTKLLKPTLEYLRSLGYLSVNYIDDFLCIG
FT                 DSFSNCLNNVETTKTLLEKLGFIINNTKSNSEPNKVCTFLGFVFDSSKMCL
FT                 TLPAEKRNRIKQLSNKFLNKKKCTIREFASYTGLLTSACPAVKYGWVYTKL
FT                 LEREKFLALNYSNNYNKHMILPNNIKSDLIWWRDNIDHSLCSFQTDNYCLE
FT                 IFSDASTTGWGVACNNRTANGHWNYSQLLLHINTLELLAAFYGLKIFASNL
FT                 KNSNILLRIDNTTAIAYINKMGGIQFPHLNNIARDIWQWCEKRNLHLFASY
FT                 IQSSKNVIADSESRQAHNIDTEWELAPYAFQQIIFSFGMPAFDLFASNQNN
FT                 KCPRYASWKLDPNSEIVDAFTFSWENINFYAFPPFSIISKVLHKIKSDKAE
FT                 GVVVVPYWPTQPWYPVWTNLLKSKALYFKPNKDLLISPFREAHPLHKDLTL
FT                 MAGKLSSKHC"
FT   CDS           3387..4412
FT                 /product="DIRS-3_SpFr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="QRSVNFPFQRGASPPQGPNIDGREIIKQALLSHEVPE
FT                 ESLDIMIASFSKNTLTQYNHILKSWWQYCNNKGTDYLHSNTKLFITFLTEK
FT                 FNSGASYSTLNSYRSALSIILGQEVTCNDATKRFFKGVYRIKPPAPKYNTT
FT                 WNPILVLNYVADYLPNESISLKDLSHKTVTLLAIASAQRMQTLSLIKIRNI
FT                 LFEHDKILIKIDDLIKTSRPGSVQPLIALPYIKENPKICPALTLKCYLDKT
FT                 SHLRNQEQSLFISYQKPHKRVGSQTLSHWVKHTLEKSGIDIKLYGAHSTRH
FT                 ASTSAARRAGINLEVIRKAAGWSESSHVFLKYYNRDITSADTLFAESLLK"
XX
SQ   Sequence 5197 BP; 1766 A; 990 C; 867 G; 1574 T; 0 other;
     ttatacctcg tatctctccc gaagatgatt acagtttaca tgcagcagca cgcgagatga        60
     tgctgtccca atcacacttt ttatagctat tatttagata tttttaaagt cgactacaaa       120
     aataaggcgt atttttatta ctaaattttc gcaacactat gcacgccgcc actacactac       180
     caaacctgga atgtcattac gtgattttgt gttgtcaaag tcacacttga aaaatcgttt       240
     tctcttcata aaaacgataa aaacattcta aaatgggaaa aaggaagcga tccgacaagg       300
     atgatagtga aatggttgaa aagttataca aaaaggtaaa gaaactggtg aaaaatagaa       360
     ggagaatttc atcatcaact tccgatgatg aaccgatgcc gccattatct cccgcgcagt       420
     cgtcacattt tgatataatt accgatctag aacctcgagg tgagtactca aacgttgttt       480
     tctcttttta tttcaaacat taaattacat tagtgccgag tgttataaaa ttattataat       540
     ccatgtgcta tcccgacgta tatcgtgtgt ggatgccaga tacctacata gttatacagt       600
     gcgttttacg ccaacattgc tatcccgacg tttaccgtgt gtggatatgt actaagtatg       660
     acaaatacct acacgtaaaa tataatttta cgttgttgca gatgaaatcc caactattga       720
     gatgcaacca gaaagtgacg agttagtaga ggaaaaccaa gatctggacc cagatatctt       780
     gcaattgcta gggtcagatc ctacgcaaaa taaatcattt ggagataatt tacataaaga       840
     tttagtaaca aggtggaaac acatcttaac taatggccta tccaaggatg aaaaaactga       900
     tattttgaaa caatacctac ctgctgaaaa ttgcacaaat atgaaggcac cggcattgaa       960
     tcctgaaata aaatcagcac tctctgataa taatatcaaa agagatgcat acagtgaaca      1020
     aaaacaaaat caaatgtcta gctgtatttc agcaattggc aaagcactga atttagtctt      1080
     gtcacaaaaa gagaatgtcc cccaagatct cataaaaaca ttgagtgatg cggggcgcct      1140
     actatgtgat acacattaca gagaatctct ttctagaagg tttgctattg taaattctct      1200
     aagcaagcaa aaacgagaaa taattaaaaa cactaaaata gatgatcatt tgttcggttc      1260
     caacttgtca gaacatctaa aatcatccaa ggctatatca gtgtctgcct cagagctaag      1320
     attcagtaca aacacggcca agtttaacca gtctcaccgt gggcaaccca acacatctac      1380
     atctcgttat cctgcggctt taaacgctcg gggggcaccg cgggcaccag ccgccgaacc      1440
     gcgagtgtac cccagccaga atcggcgtca gctaccacca ccgtcggcgc cacgggacca      1500
     tcgtcgtgta ccgacgacga cacgcccgcg gatcaactac ccacaacaat ctcgtcgacg      1560
     ttaacaaccc catcacaggt aattaattat atacctactg ccggcaggct ccgatatttc      1620
     tatcatgaat ggcttcatat aacaagtgac aaaactattc tgtcttggat taagggatat      1680
     aggataccat tccgttgtga accatatcag actaatattg caaaatccaa atcttataca      1740
     tttacagaaa ctaacataat tgatgagtgt atctctgaaa tgttagaagc aggctttatt      1800
     tcctgctgca ccccatgtga aaaacaattc atttcaccta tttttaccat tcccaagcgc      1860
     aacggaaaac accggtttat actgaattta aaagaactga ataaatttat aattctcaat      1920
     cattttaaaa tggaagacta ccgtacagca ttaaaattaa ttgataaaaa ctatttcatg      1980
     gccacaatcg atttaaaaga tgcatatttc ctggtaccag tagcagaaag tgatagagtt      2040
     tatctccgtt tttattggaa ttcagaatta tttagagata gattattcga atttaatgta      2100
     ctaccatttg gcttatgtac tgctccttat atgtttacaa aattactcaa accaacatta      2160
     gagtacttac gctcattagg ctatttgtca gttaattata ttgatgattt tctgtgcatt      2220
     ggtgactcat tcagtaattg tctcaataat gtggaaacaa caaagacgtt attagaaaag      2280
     ttaggattca taataaataa tacaaaaagt aatagtgaac ctaacaaagt ctgcacattc      2340
     ttaggttttg tatttgattc ttcaaaaatg tgtctaacat tacctgccga aaagagaaac      2400
     cgtataaaac aactatcaaa taaattttta aataaaaaaa agtgcacaat cagagaattt      2460
     gctagttata caggattact aacatctgca tgcccagctg tgaaatatgg ctgggtatac      2520
     acaaagttac ttgaaaggga aaagttcttg gcacttaatt attctaataa ttataataaa      2580
     catatgattc taccaaataa tattaaatct gacctaattt ggtggagaga taacattgac      2640
     cactcacttt gttcgttcca gactgataac tattgtctag agatatttag tgatgcctca      2700
     accacgggtt ggggtgtagc atgcaataac agaactgcta atggacattg gaattattct      2760
     caattattac tacatataaa tactcttgag ttgttagcag ctttctatgg cctaaaaata      2820
     ttcgcttcga atcttaaaaa ctctaatatt ttgctgagga ttgataatac cacagccatt      2880
     gcttatatca acaagatggg tggtatacaa tttccccacc taaataacat tgcaagggat      2940
     atatggcaat ggtgcgaaaa acgtaattta cacttgtttg catcctatat tcaatccagc      3000
     aaaaatgtta ttgcagattc cgagtcgcgt caagcacata acattgatac agaatgggaa      3060
     ttagcaccat atgcctttca acaaataatt ttctcatttg gtatgccagc atttgattta      3120
     tttgcaagta accaaaataa taaatgtcca agatatgcat catggaaatt agatccaaat      3180
     tctgagatag tagatgcctt taccttcagc tgggaaaaca taaactttta tgcttttcca      3240
     ccctttagta ttatttctaa agttcttcat aaaattaaaa gtgacaaggc agagggggtg      3300
     gtggtggtgc catactggcc cactcaaccc tggtacccag tatggacaaa tctactgaaa      3360
     tcaaaagcac tttacttcaa acctaacaaa gatctgttaa tttccccttt cagagaggcg      3420
     catcccctcc acaaggacct aacattgatg gccgggaaat tatcaagcaa gcattgctaa      3480
     gtcatgaagt cccggaggag tctcttgata ttatgatagc ctctttctct aaaaatacct      3540
     taactcaata taatcatatt ttgaagtcct ggtggcaata ttgcaataat aagggtactg      3600
     attacctgca ttcaaatact aaactgttta taactttctt aactgaaaaa tttaactcag      3660
     gtgcttctta tagcacacta aatagctatc gttcagcact atctataatc ctaggtcaag      3720
     aagtaacctg taatgacgca actaaacgat tttttaaagg tgtataccgc ataaaaccac      3780
     ccgcacccaa atataatact acttggaatc ctatcttagt acttaattat gtagctgatt      3840
     acttacctaa tgagtcaata tcattgaaag atttatccca taaaactgta acccttttag      3900
     caatagcatc cgcgcaaaga atgcaaactt tatcccttat taagataaga aatattttat      3960
     ttgaacatga taaaattctc ataaaaattg atgacttaat aaaaacttca aggccaggat      4020
     ctgttcaacc cttaattgca ttgccatata tcaaagaaaa tccaaaaatt tgcccagcct      4080
     taactctaaa atgttattta gataaaacat cccatctccg aaatcaggaa cagtcactgt      4140
     ttattagtta ccaaaaaccc cacaaaagag taggttctca aactttatct cactgggtaa      4200
     aacacacttt ggaaaaaagt ggcatagata taaaactgta cggcgcgcac agtacgcgac      4260
     acgcgtcaac gtctgctgcc cgtagagcag gcataaatct ggaggttatt cggaaagccg      4320
     ccggctggtc ggaatcctca catgtttttt tgaagtacta taatagggat attacttctg      4380
     cggacaccct atttgcggag tcactgctca aataatattg atttgtatga ctgattatgt      4440
     taccttgttt aataattatg atacctaggt ctacctctat tataatttat cattgtagtg      4500
     attatcgctg tgatacttga ttgtaagttg attgccctat ttgcggagtc actgctcaaa      4560
     taatattgat ttgtatgact gattatgtta ctttgtttaa taattatgat acctaggtct      4620
     acctctatta taatttagca ttgttgtgat tatcgctgtg atacttgatt gtaagttgat      4680
     tgtaattatt actataagag aagataacta cttaagttaa tttcaataaa tgtcgttatt      4740
     gtgattattc taaagtttaa ttttttcgat actctaaaca tctgcatgta aactgtaatc      4800
     atcttcggga gagatacgag gtataattaa gaatcaaacg aacttacctt gtgaagtttg      4860
     atatctaatt atacgagtat cttgaccgaa gatgattaca ttcccaccca cccataaata      4920
     cccaaaaaat tatcgaaaaa attttgctct aaagaatgac attccaggtt tggtagtgta      4980
     gtggcggcgt gcatagtgtt gcgaaaattt agtaataaaa atacgcctta tttttgtagt      5040
     cgactttaaa aatatctaaa taatagctat aaaaagtgtg attgggacag catcatctcg      5100
     cgtgctgctg catgtaaact gtaatcatct tcggtcaaga tactcgtata attagatatc      5160
     aaacttcaca aggtaagttc gtttgattct taattat                               5197
//
ID   DIRS-3_TrNi repbase;    DNA;    INV; 5076 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the cabbage looper genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-3_TrNi.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5076
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 3-3 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. ~147-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1539
FT                 /product="DIRS-3_TrNi_1p"
FT                 /translation="MEKSTKVPAEGDGSRPPPAASPQASSSSSSSSSNSSA
FT                 PCRRRRQLRKEARETDERRLDLLSNQVSEILYYLKNNDHFSNKETEPESDS
FT                 DISLHPSEGLRVSLGNDHLFSKPQKAKVFEFPVSTNLKEPTVENANEGRLH
FT                 VLNKLHHFDTNDWQRVRYLETEKKYVAKPGFYELDVNTELRHCDTNSSWLR
FT                 LLDRSFGAFTHGLIQQNELLRSNFQQIIEWAQSPGCILNADTLFENIKAAF
FT                 SENSPYMKVSEDLLQMSCGRRADIIQRRRDCILSGVKDKYVKEDLQKIPPT
FT                 QNNLFNPQDLTAFLQRAGGTSKLFSAQKRSAEEPHAMSMRNRQDGPPAKRP
FT                 RKPFLGNNSGLDPQPSTSFQAPPKSRGRMSGNNKFGTRQNDKKRSSDNRKS
FT                 DRYRK"
FT   CDS           1406..3439
FT                 /product="DIRS-3_TrNi_2p"
FT                 /note="reverse transcriptase, and ribonuclease H."
FT                 /translation="IPSHPRAFKRPPKVEAECRVTINSAQGRMTKNGPPTI
FT                 VNPIDIVSDYSQEILFYGGRLKNYIQIWQNYGAPENIIKMISGYRIPFLKI
FT                 PPLQSPDLLTHFRTPTSLLMSEQIEILKQQKILIRIDPSPSYVCPMFLVQK
FT                 SDTSNRPIFNLKNLNRYVMQTKFHLINMYRVPDFLQPNDWAIKIDLSQAYF
FT                 HLAIGCSHYPFLRVLYATEKKSSPELLQITCLPFGLSSAPKAFATVTNWVA
FT                 DVLRGRGMRVIVYLDDYLIVNQDRLTLMDHAAEAIRVLTTLGWMINYQKST
FT                 LIPTKAVDYLGIKWNLALNSKYLPEEKVGKISNMIRHILQVNQWSLHDAQC
FT                 LLGMLNFAAFVVPRGRLHCRPLQVACNRLPKHQAYVKHPLESEVSTTLMWW
FT                 LRALSTGTAIHPDPVSHYVTTDASARGWGAIVDDASLNGLWSPEQKKWHSN
FT                 LKEMWAVIQALTNRQQSLRHSTVLVQSDNKSVVSYMRNEGGLRSQNLYRLT
FT                 CMLFEIADENKIHLVSQYLPGQVNTDADMLSRLKLPGEWTLTEEACQEVFR
FT                 KFGMPEIDLFASKTAHVLARYVSRDCKDSNAEFHDAFSRRWSYRRAWVFPP
FT                 PHLIPRILSHLNLCKGRYILIVPRWSKVFWRPDLKRRAVSAPLPIFNLQQQ
FT                 LLDTRTYLPPVHVDQMYLEAWLVKGGVPN"
FT   CDS           1543..4389
FT                 /product="DIRS-3_TrNi_3p"
FT                 /translation="LFSRNFVLWRAVKKLHSNLAELRCSRKHNKNDIWLPN
FT                 SFFKNTPTSKSRLINTFSNSNKLIDVRTDRDFETTKNLDSNRSISKLCLSD
FT                 VFSTKVRYQQSPDIQFKKSKSLCNANKVSSNKYVPCAGFLATERLGDQNRP
FT                 FPGLFSSSDRLQSLPISASIIRNRKEVEPGAPSDHLFAIRAVIGTQGICDS
FT                 DELGSRRAAREGHASNRLFGRLFDREPRSINPDGPCCGSYKGPNNFGVDDQ
FT                 LPKIHINPYQSRRLPRHKMESRPEFQIFARGKGWQNLQYDTPHTTGKSMEF
FT                 ARCSMLARHAKLCSLRCTQRSASLPPITSSLQSASKAPSIRKTPTRVGSVH
FT                 DLNVVVTSSINRNSDTSRSCLTLCNDRRICQRLGCHSRRRFSERIMVPGTE
FT                 EMAQQFKGNVGSYTSLNQSSAIATSFNRASPIRQQECGELHAERGGSPITE
FT                 PLSANVHVIRDCGREQDSPGLSVPARSGKHRRGHAVKAQITRGVDLNGRSM
FT                 SRGISQVRNARNRLVRLENRARACSLRLTRLQRLERRVSRRLQQKVVIPSS
FT                 MGIPATTPNSTNSVTPQPVQGSLHPNSTALVQSVLAAGPEEESGERSITHI
FT                 QSSAAVTRYTDISASGSRGPDVSRGMASEGWCAELTNWSQNEIDLFNSSWR
FT                 PSTKKMYAAIWKKWLKWCTDNNFNHTNPSGAQVAKYLAYLHLTLKLSYKTI
FT                 LVYKSTIVTLACPNGRIISSDPIVQRMLKAISLANVDSKPRNSFIWDPRIV
FT                 VEWLSCNQPPHASLFQVSRRTALILLLASSRRVHDLTLLRVDSAHFEDNSN
FT                 HIILHPAFGSKTDSYTHRQSSWKLHTHTDKSICPVWWIRKLIETSSSRRIN
FT                 NDINHLFISTRGRVRPASRTVIGGWVKTILKEAGIKATPGSTRSAAASLNW
FT                 LECHNIDEIMAKGNWRVPNTFARFYSAEINTSQSCNNLSLTFEAV"
XX
SQ   Sequence 5076 BP; 1504 A; 1132 C; 1059 G; 1378 T; 3 other;
     tattatacac tatgaaccgt tattctagac ctatacagtg agacagcatc tttccggatc        60
     tgacgtcacg acctctcttg tttccccctc ccgctcggct ccgcccccta tggccggggg       120
     agggggcgac gagcttgccc gaacacwcag gcgcgctctt cacattggca tcgtttttcg       180
     gtgcgatcac acctcttcta gtgcgggcaa cagcgctgct gtttagtgta aaattattat       240
     tgctttaaat aaaaatacct acattttttc gtggaaaaac tttattttaa aatatcggtw       300
     agtgtttaaa gtgcacgtgt tgaggcgcat tttgtttgcg taatggaaaa atccacgaaa       360
     gtgcctgccg agggtgacgg gagtcgcccg cctcccgctg cgtcaccgca ggcatcttct       420
     tcgtcgtcct cgtcgtcgtc taacagctcc gccccgtgtc ggagacgccg ccagctgcgg       480
     aaggaggccc gagaaactga cgagcgcagg ttagacttgc tgtcaaatca agtgagtgaa       540
     atattatact acttaaaaaa taacgatcac ttttcaaaca aagaaaccga gcccgaatct       600
     gattctgata tttccttaca tccatctgaa ggcttgaggg tttctcttgg gaatgatcac       660
     ctttttagta aaccgcagaa ggctaaagta ttcgaatttc cggtatccac taacctaaaa       720
     gaaccgactg ttgaaaatgc caatgaaggt agattacatg tactaaataa actacatcat       780
     tttgatacta atgattggca aagggttaga tacctggaaa ctgagaaaaa gtatgtcgct       840
     aagccaggtt tttacgaact cgatgttaac actgaactta gacattgtga tacaaattct       900
     tcttggctta gattacttga tagatcgttt ggagctttta ctcatgggct tatacaacaa       960
     aatgagctgc taagaagcaa ctttcaacaa atcatagaat gggcacaatc gcccggmtgc      1020
     atacttaacg ctgacacact ttttgaaaat attaaggccg ctttttccga aaactcgcct      1080
     tacatgaaag tgtccgaaga tctcttgcaa atgagttgtg ggagacgtgc tgatatcatt      1140
     caaagacgcc gtgactgcat tttgtcgggt gtcaaagata aatatgtaaa ggaggacttg      1200
     caaaaaatcc ctccaacaca aaataacctt tttaatccac aggacttaac cgccttttta      1260
     caaagggctg gtggtacaag taagttgttc tctgcccaga aacgctctgc ggaagagcct      1320
     catgccatgt ctatgcggaa tagacaggat ggcccgccag ctaagcgacc acgtaagcca      1380
     tttctcggta acaattctgg gttagatccc cagccatcca cgagctttca agcgcccccc      1440
     aaaagtagag gcagaatgtc gggtaacaat aaattcggca caaggcagaa tgacaaaaaa      1500
     cggtcctccg acaatcgtaa atccgatcga tatcgtaagt gactattctc aagaaatttt      1560
     gttttatggc gggcggttaa aaaattacat tcaaatttgg cagaattacg gtgctccaga      1620
     aaacataata aaaatgatat ctggttaccg aattcctttt ttaaaaatac ccccacttca      1680
     aagtccagac ttattaacac attttcgaac tccaacaagc ttattgatgt cagaacagat      1740
     cgagattttg aaacaacaaa aaatcttgat tcgaatagat ccatctccaa gttatgtctg      1800
     tccgatgttt ttagtacaaa agtcagatac cagcaatcgc ccgatattca atttaaaaaa      1860
     tctaaatcgc tatgtaatgc aaacaaagtt tcatctaata aatatgtacc gtgtgccgga      1920
     tttcttgcaa ccgaacgact gggcgatcaa aatagacctt tcccaggcct attttcatct      1980
     agcgatcggc tgcagtcatt acccatttct gcgagtatta tacgcaacag aaaagaagtc      2040
     gagcccggag ctccttcaga tcacttgttt gccattcggg ctgtcatcgg cacccaaggc      2100
     atttgcgaca gtgacgaatt gggtagcaga cgtgctgcgc gggaggggca tgcgagtaat      2160
     cgtttatttg gacgattatt tgatcgtgaa ccaagatcga ttaaccctga tggaccatgc      2220
     tgcggaagct ataagggtcc taacaacttt ggggtggatg atcaactacc aaaaatccac      2280
     attaatccct accaaagccg tagactacct cggcataaaa tggaatctcg ccctgaattc      2340
     caaatatttg cccgaggaaa aggttggcaa aatctccaat atgatacgcc acatactaca      2400
     ggtaaatcaa tggagtttgc acgatgctca atgcttgcta ggcatgctaa actttgcagc      2460
     cttcgttgta cccagaggtc ggcttcattg ccgcccatta caagtagctt gcaatcggct      2520
     tccaaagcac caagcatacg taaaacaccc actcgagtcg gaagtgtcca cgaccttaat      2580
     gtggtggtta cgagctctat caaccggaac agcgatacat ccagatcctg tctcacacta      2640
     tgtaacgaca gacgcatctg ccagaggctg gggtgccata gtagacgacg cttctctgaa      2700
     cggattatgg tccccggaac agaagaaatg gcacagcaat ttaaaggaaa tgtgggcagt      2760
     tatacaagcc ttaaccaatc gtcagcaatc gctacgtcat tcaaccgtgc tagtccaatc      2820
     agacaacaag agtgtggtga gttacatgcg gaacgagggg ggtctccgat cacagaacct      2880
     ctatcggcta acgtgcatgt tattcgagat tgcggacgag aacaagattc acctggtctc      2940
     tcagtacctg cccggtcagg taaacacaga cgcggacatg ctgtcaaggc tcaaattacc      3000
     cggggagtgg accttaacgg aagaagcatg tcaagaggta tttcgcaagt tcggaatgcc      3060
     cgaaatcgac ttgttcgcct cgaaaaccgc gcacgtgctt gctcgctacg tctcacgaga      3120
     ttgcaaagac tcgaacgcag agtttcacga cgccttcagc agaaggtggt cataccgtcg      3180
     agcatgggta ttcccgccac cacacctaat tccacgaatt ctgtcacacc tcaacctgtg      3240
     caagggtcgc tacatcctaa tagtaccgcg ctggtccaaa gtgttttggc ggccggacct      3300
     gaagaggaga gcggtgagcg ctccattacc catattcaat cttcagcagc agttactaga      3360
     tacacggaca tatctgcctc cggttcacgt ggaccagatg tatctagagg catggctagt      3420
     gaagggtggt gtgccgaatt aactaattgg tctcaaaacg aaatagacct atttaattct      3480
     agctggcgac cctctacgaa gaaaatgtat gctgctattt ggaaaaaatg gttaaaatgg      3540
     tgtactgata ataatttcaa ccatacaaat ccatctggtg cccaagtcgc taagtaccta      3600
     gcatacttgc acttaactct taaactgtct tacaaaacta ttttagttta taaatcaaca      3660
     attgtcactt tggcttgtcc taacggacga atcataagca gtgatcctat cgttcagaga      3720
     atgttaaaag ctatttcact tgctaatgtt gattccaaac ctagaaattc tttcatttgg      3780
     gatccacgta ttgtggtaga atggctcagc tgtaaccagc cgcctcatgc aagtttattc      3840
     caagtgtctc gtcgcacagc actgattttg ctactcgctt ctagtcgtag agtccatgac      3900
     ctgacactgt tacgggttga tagtgctcat tttgaagaca attctaatca tattattcta      3960
     cacccagcat ttggctcaaa gacagatagc tatacacaca gacagtcatc atggaaattg      4020
     cacacacata cagataaatc catatgccct gtgtggtgga tacgtaagtt gatagaaaca      4080
     tcttcatcac gtagaattaa caatgacatt aatcatttat tcatatcaac tcgtggcaga      4140
     gtcaggccag cctctcgaac agtgattggg ggttgggtta aaactattct taaggaggca      4200
     ggaataaagg ctactcctgg tagtactcga agtgccgcag catctcttaa ttggcttgag      4260
     tgccacaata ttgacgaaat catggcaaaa gggaactggc gtgtccccaa tacatttgca      4320
     cggttctatt cagctgaaat taacacatcg caaagttgta acaatttatc tctgacattt      4380
     gaagccgtgt agattctaaa taatatatga ttacctacct actaattaat gtaatttcag      4440
     ttcaaaacga cattgttata ttaagttaaa atgatttatt taatctatga tttaaagcta      4500
     atcatgagtg aatatcaaga cttatgtagg tgtaagttct tattactata gtacctattt      4560
     gttttggttg attaaaataa acatcttttt ctttacataa ttatacattt tgtttaatat      4620
     agatactcct aggtacttat attgaaccaa attatttaga tacctaagtt atttattttt      4680
     cacacattgg catatactta gcttgccacc aggcgataat aaacacatct cactgtatag      4740
     gtctagaata acggttcata gtgtataata taatgtttta cctgaaaata aaacagttat      4800
     tatatacgta accttattct agacctatat ttttaatcct gcctggtgga ctcatacctg      4860
     atccaccgga agtgagatac aatgtgaaga gcgcgcctga gtgttcgggc aagctcgtcg      4920
     ccccctcccc cggccatagg gggcggagcc gagcgggagg gggaaacaag agaggtcgtg      4980
     acgtcagatc cggaaagatg ctgtctcact gtataggtct agaataaggt tacgtatata      5040
     ataactgttt tattttcagg taaaacatta tattat                                5076
//
ID   DIRS-4_FoCa repbase;    DNA;    INV; 4998 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4998
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2436-2436 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. The sequences 27-165 and 4786-4924
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           614..1327
FT                 /product="DIRS-4_FoCa_1p"
FT                 /translation="KFSRRSSVEKQGPITGNGHLVFRTMKLKMKLKNCSAK
FT                 EHPVMMVIFNYCNMKNFELRRVWLPCNKVARFIAGPQIIEVNELLEDIEKG
FT                 NELGPDVSQNVAESFLKTITRPLSKESKTKLRDNLKTPANCKQFAPLKVNN
FT                 EIWRIIPSHARLQDVKQQQQQQALSTGLTALTMITNQILERKAEIPKEVVS
FT                 QIVKQSIDAANILGDQVQQLNLTRRLDMRKYLNPEYAGICTSQVKFKI"
FT   CDS           3499..4503
FT                 /product="DIRS-4_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MLPNDKHEIQLDGRSLIGKKWTDLGLSNTSLELLQAS
FT                 KSAATWAQYKSSLDSWIQFCKIKHWCPEEKDLCHYVEFLSSLYERGLSYST
FT                 INTARSAFSAVFGKICGVPIGENKIIVDLMKGISRLRPVKPRYSITWNPDK
FT                 VLIYLQSIQTNSCNLKELTFKTVAILALATGQRVQTLASIRLSNIHISESA
FT                 QIVINDRMKTTTVTRSNPVIYLPPFQNFEICPVKVLIRYINCTKDVRNNND
FT                 ELFLSFAKPHKAVGSETISRWLVNVLDLAGISSENYKAHSFRHASTSKAAK
FT                 VGVHIDSILKRVGWSKNSSVFARFYNRPIINDAEFAESILNIN"
FT   CDS           1943..3568
FT                 /product="DIRS-4_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MFTVPKPDGTRRPILNLRKLNLFVESPHFKMETIKNV
FT                 SDLVTKDCFMAVVDLKDAYHAVPMGEISQKYLKFRWNGQLYTYTCLPFGFS
FT                 LAPYLFTKLTKPIVAKLRSQGVIVLAYLDDILIFGNNYDECMTNMEKIISL
FT                 LQKLGFTVNREKSQLLPSKIVRYLGFMINSGNMLLSLPEEKKVSLSEKCAA
FT                 VIKSKQITIRKLAELIGSLIAAVPATRYGLLYTRQLEIEKIAALANNNNNY
FT                 SGKICISNIAKNDLTWWIQVLPNSFRSIQNIVKHDREMFTDASLLGWGAFC
FT                 EGVETKGTWSANFLSYHINLLELYAVYFGLKALIKDRNIHILLRVDNTTTL
FT                 AYINRSGGCKPDLHEIAKKIWQYAEQNNITLTASYINTKQNVIADRLSREK
FT                 ASSSDFMLSGNYFQKICKTFGQPTMDLFASHSTTQCEKFYSYRPDPYSQGV
FT                 DSFLFTWFDGEYAFPPFNMVAKTIQKIKQDKCEIIVVAPFWKTQHWFPLYK
FT                 MLAISEIIIMGPNRHLLFDPYRQCYRTINTRFSLMAAVLSGKNGQI"
XX
SQ   Sequence 4998 BP; 1664 A; 858 C; 990 G; 1486 T; 0 other;
     attttatctc atcttcctct ccgtctacat cacggagaga aacagttgta gtggctgatt        60
     ccggtatcag ggagacaggc acgatctgcc atctttcaaa aataaaacaa actttttcaa       120
     cacttccacc aacctcagcc cggcgtggtc ctccatcgtc acagttgatt tttggcaatc       180
     ggggagacac attctttggt gaaagaaaaa ttctaattga tccagttttc agtttttcaa       240
     ccacacccag ccctacttta gtgcaacagc agcagaacta ctcgaaggta agcgcagttt       300
     tggtttgggg ggtcggaggt agttttattt ctaattcaaa ttagttgcga gtcaaattgc       360
     gagtcaaagt tgcgagtcaa attgcgagtc aaagttgcga gtcaaattag attaaactag       420
     tcaagagaat gtaatgaaaa taaagaaaga agccaacgtt ccctcgatga ggataacggc       480
     aataaccaat cattgtagat ttttaatatt ttattaaggc aacaaaatta tttttctttt       540
     aacacaaaga tgaccgagcg tgaagaaaat gctagtttgg aagaaagatt gaaaaagagc       600
     gaagaagctt tagaaatttt caaggcgcag ctcagtggaa aaacagggac cgataacagg       660
     aaatggtcac ttggtctttc ggacgatgaa attgaagatg aagctgaaaa attgctcggc       720
     aaaggaacat ccagtgatga tggtaatttt taattattgc aacatgaaaa attttgaatt       780
     acgacgagtc tggttaccgt gtaataaagt ggctcgtttt atagcaggcc ctcaaataat       840
     tgaggtgaat gaattgctgg aggatataga aaaaggaaat gagcttggtc cagatgtttc       900
     gcagaatgtt gctgaaagtt tcttgaaaac gattactcgc cctttgtcta aagaatctaa       960
     aacaaagttg cgcgataacc tgaagacacc ggcaaattgt aaacaatttg ctccattgaa      1020
     ggttaacaat gaaatttggc gaatcattcc gtcgcacgca agattgcaag atgtgaaaca      1080
     acaacagcaa caacaagcat taagtacagg attaactgct ttaacaatga ttacaaatca      1140
     gattctcgaa agaaaagctg aaattccaaa ggaagttgta agccaaatag taaaacaatc      1200
     tattgatgca gccaacatct tgggagatca ggtccaacag ttgaatttga ccaggcggct      1260
     tgatatgaga aagtatctta atcccgaata tgctggtatt tgcacatccc aggtaaagtt      1320
     taaaatataa atcctgcatt gtttatttaa tgtattctgt attacctgta ttgaatacaa      1380
     agtttataaa tcaggtcact agcacagaat ggctgtttgg caatgatctg aacgaaagtt      1440
     tgaaaaactc taaagccact gctactctgc tgaggaacac atcatctcgt gggggtcgat      1500
     ttcaaccata caacaagaat tatgctagtc gacaaaactt cagctctccg aatactttaa      1560
     acttcaatcg cccgttccgt catcagaggg ggaacgggca gtttcgccag caaaattatc      1620
     ggccaagcgg acaatttcaa caatcgagat tcagtcaacc attccgcccg caaagaaatt      1680
     aaaaccagtg gttagttgta aagcttgtaa attagtaaaa tgttatgagc aatggggtaa      1740
     aattacgtca gatagtttta ttttaagtat aattaagggt tatgagattc aatttaaatc      1800
     agttcctttc caaaccgttg agcccatagt accaacattt tctccttccg atgaaaaact      1860
     gattaacgag agtattgaca aattattaaa tactggggct attataaaat cagataatga      1920
     ggaaggtcaa tttgtttcca caatgtttac agttcctaaa ccagacggca ctagacgccc      1980
     tattttaaat ctaagaaagc ttaatttatt tgttgagtct cctcacttta agatggagac      2040
     aattaagaat gttagcgacc ttgtaacaaa agactgtttt atggctgttg tagacttgaa      2100
     ggatgcttat catgcagtcc caatgggtga aattagtcaa aaatatttga aattcagatg      2160
     gaatgggcag ctttacactt acacttgcct tccatttggg ttctcactgg caccatattt      2220
     gtttacaaaa ttaaccaagc ctattgttgc aaaattaagg tcacaaggtg taatagtttt      2280
     ggcataccta gatgatattt taatttttgg aaataattac gacgagtgta tgacgaacat      2340
     ggaaaaaata atttcgctct tgcagaagct aggtttcaca gttaatagag aaaaatctca      2400
     attgctgcca tccaaaatag ttaggtattt aggatttatg ataaattctg gcaatatgtt      2460
     gttgtcatta cctgaggaaa agaaagtaag tttaagtgag aaatgtgcag cagtaattaa      2520
     atctaagcaa attacaatta ggaagcttgc agaattgatt ggttcattaa tcgcagccgt      2580
     acctgctact agatatgggc ttttatatac aagacaatta gaaatcgaga aaattgcagc      2640
     attggctaat aataataata attattcagg aaaaatttgt atttccaaca tagcaaaaaa      2700
     tgatttgact tggtggatcc aggttttgcc aaatagtttc agatcaattc aaaacatagt      2760
     aaaacatgac cgtgagatgt ttaccgatgc ctctctcctt gggtggggcg cattttgtga      2820
     aggtgtagag actaaaggaa catggtccgc taatttttta tcctatcata taaatttatt      2880
     ggaattgtat gcagtttatt ttggtttgaa ggcactaatt aaggacagaa atattcatat      2940
     tctcttacga gtggataaca ccacaacatt ggcatacata aataggtcgg gtggctgcaa      3000
     accagatttg catgaaatcg ccaaaaagat ttggcaatat gcagagcaaa acaatatcac      3060
     tctcacggct agttacataa acactaaaca aaatgtgatt gcagatagat tatctcgtga      3120
     aaaagctagc tcatccgatt tcatgctttc aggaaattat tttcaaaaaa tttgtaaaac      3180
     atttgggcaa cctaccatgg atctatttgc atcccattca acgacacagt gtgaaaaatt      3240
     ttattcgtac agacccgacc catattctca gggtgttgat tcttttttgt ttacttggtt      3300
     tgatggtgaa tacgcttttc ctccatttaa tatggtagca aaaacaattc aaaaaattaa      3360
     acaggataaa tgtgaaataa tagtggtagc accattctgg aaaacacaac attggttccc      3420
     attgtataaa atgcttgcaa tatcagagat aataattatg ggtcctaata gacatttatt      3480
     attcgatccg tacagacaat gttaccgaac gataaacacg agattcagct tgatggccgc      3540
     agtcttatcg ggaaaaaatg gacagattta ggattatcaa acacctcact cgaattgtta      3600
     caagcatcaa aatccgcagc aacgtgggca cagtataaat cttcattaga tagctggatc      3660
     cagttttgta aaattaagca ttggtgtcca gaagaaaaag atctttgtca ttatgtagaa      3720
     tttttaagta gtttatatga aagaggatta agttatagca ctataaatac tgctcggtca      3780
     gccttctctg cagtatttgg taaaatttgt ggcgtaccca ttggcgaaaa caagataatt      3840
     gtagatttga tgaagggaat tagtaggcta agaccagtta aaccgaggta tagtatcaca      3900
     tggaatccag ataaggtttt aatttactta cagtctattc aaactaattc gtgtaacctg      3960
     aaggaattga catttaaaac agtggcgatt ctggcgttgg ccacaggtca aagggtgcag      4020
     acattagcta gtataagatt aagtaatatt catataagtg aatctgctca aattgttatt      4080
     aatgatagaa tgaaaacaac cactgtaact agaagtaatc ccgtaattta tttaccaccc      4140
     ttccaaaatt ttgagatttg ccctgttaaa gttttgatca gatatattaa ttgtacaaaa      4200
     gatgttagaa ataataatga cgagctgttt ttgtcattcg ctaagccaca taaagctgtg      4260
     gggtcagaaa ctattagtcg ttggttagta aatgtcctag atttagctgg aatatcctct      4320
     gaaaattata aagcacatag ttttaggcat gcatcaacct ccaaggctgc aaaggttggt      4380
     gtacatatag atagcattct taaaagagtc ggatggtcaa aaaattcgtc agtttttgcc      4440
     aggttttata accgaccaat aattaatgac gctgaatttg cggaatctat tttaaatatt      4500
     aattagtgat tttgtgttga aagttaatac ttgtatactt gaataaattt gttcgtttga      4560
     tatattaata atttcccgat tgctatactc gtcgacttat ttttgaacaa ctacaactgt      4620
     ttctctccgt gatgtagacg gagaggaaga tgagataaaa ttgtggattt tgcgagcccg      4680
     aagggcgaag caaaatccta attttgtgat atcttccgaa cccggaagac atcacggccc      4740
     tccgacccac ccccttcgta gactaagtcg acgagcgctt tgaatactgt gacgatggag      4800
     gaccacgccg ggctgaggtt ggtggaagtg ttgaaaaagt ttgttttatt tttgaaagat      4860
     ggcagatcgt gcctgtctcc ctgataccgg aatcagccac tacaactgtt tctctccgtg      4920
     atgtcttccg ggttcggaag atatcacaaa attaggattt tgcttcgccc ttcgggctcg      4980
     caaaatccac aattttgt                                                    4998
//
ID   DIRS-4_HeAr repbase;    DNA;    INV; 5377 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5377
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5284-5284 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 163-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           497..1906
FT                 /product="DIRS-4_HeAr_1p"
FT                 /translation="MDDIDNNTCVTAIIEEPRHDLSRDCVPKPTQSSSRKR
FT                 ARSVRSSSSSSHSSSSDTTDSTSSSDRKKKRGHKRRRGKHSRKSRKDDRQM
FT                 HKLFREVSALRQQISLTSVVPCGGVEPPSVVDNDLSIDDSVSGILYKEVSD
FT                 TCTSEPCQVELPFNFDIETKLKEPAYPKAPENLLKSLQDIQHFNKSEWSEV
FT                 RYFEVQKSYCHKPGFIDLEANEEIRVYDQSRFLASIDKAYAALTFCALKQR
FT                 QALSSTLTELLSWAHAEQDLNFNSLQDKITEVFSKGDFHKVSSDLLQLICG
FT                 HRAEVLQKRRAGITNQVRDPLMRATLSKIPPSDRHLFECEAFTAALEKMGG
FT                 VKKTFWPLSKPTSGSVAQAGPSNVTRHPPQGSARYHGPSQGTSHGCCASLP
FT                 HPHYQYRQSSQDCYHERPQQQNNLSDRRTAPASNNRSSFRSRGGRQTYKPQ
FT                 SQGKGNRKRPGVSSDYNSGNKNRKY"
FT   CDS           1752..3782
FT                 /product="DIRS-4_HeAr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="VTVARRLQVTTEVHFAHEVAAKPTSRRVRAKETVNAP
FT                 ESPLTITLGTKIVSTDSIKFRAGQLARFYNRWEEMGAPNFLLRIITGYRIP
FT                 FLLKPPLIWPHLRKGPYITQESESMSALISQMKDQGVLEAVPLSPSFLSTM
FT                 FLVPKSDGSDRPIFNLRALNNYVKTEPFRLINVFRVPEFLQPGDWLCKIDL
FT                 SQAYFHLPISPAHRRFLRLIYQGELLEMTCLPFGLSTAPKVFASLSNWVAQ
FT                 TLREQNLRIIVYLDDFLVAHQDKDTLQTHVHTLLNRLEYLGWQVNLKKSVV
FT                 FPQKSLVYLGVQWDPWDNTKSLPQDKVENVIHKVSLMLNLGKACLQELQSL
FT                 VGLLNFASFVVPQGRLHHRSLLSFLNASLTMPVRKEIPLPDEVLGDLRWWL
FT                 HNCHQPSAIHLPPPTHFVTTDASDLAWGAQVDSYAVSGTWTAQERHLHCNL
FT                 KEMLAILKVLESHGPVMGRSTALFQCDNRTVVSHLRNEGGTRSPSLMEVTR
FT                 RVFSLLEFHQINLTVSYIPGIYNGHADHLSRHKRAPEWHLLPACTDKIFHK
FT                 FGIPVVDLFASSRAKVVSNYVSLDLTDTQALFHNAFSRQWNYHLAWVFPPP
FT                 YLIPKVLAHLNSAIGLYLLIVPRWGRVFWRADLKARAVAAPWSITNLRENI
FT                 IDTTTGLPPPKVQEMALEVWKCGGGRKV"
FT   CDS           1910..4735
FT                 /product="DIRS-4_HeAr_3p"
FT                 /translation="LDKIQGGSTGTILQSMGGNGGSKLSVAHNNRVSHTLS
FT                 SKTTPNLATFEERSLHHTGVRIDVGTHQSDERPRCVRSSAAFPELPVNHVS
FT                 CAKERWLRSPNIQPKSLKQLCKNGTLPPDKCISCTRVPSARRLALQNRPIA
FT                 SVLSFTDFSGTQEIFAPHLSRGTFRNDLLTLRPQYSTEGVCFPEQLGRSDI
FT                 AGAESAHNCLFRRFSGGSSRQRHSANSCSYSPEPSGISRVASQPKEICCIP
FT                 AEESCVPGSSVGSLGQHKIPSTGQGRKRYSQGLFNAKLRQGLPARITKPSG
FT                 PSKLCEFCSTTGQTTSSVSAQLPKCVSDYASQEGDPLTRRSPRRSPVVASQ
FT                 LPPAICYPSATTNSFCDHRCLRSGLGSSGGQLCSVGYVDRSRTASTLQSQG
FT                 DVGDLKGARIPRACNGQVHCSVSVRQSNSCVPLAKRGRYEVTISNGSNSES
FT                 VQLTRVSSNKSYSQLYTRHLQRTCRSPIQTQTSSRVASSTRMHGQDISQVW
FT                 YSGSGSICVQSGKGGIQLRVFGFNRHPSFIPQCLFPAVELPPGVGVPTTVP
FT                 NTQGASPSQLGDRAVPVNCPPVGSSVLAGRSQSPSSSSSVVDHQSQGEYNR
FT                 HHDRPATPQGSRDGARSMEVWGWSKSLTGWNEDQILLLKASWRPSTLRTYK
FT                 VAWDRWVSWSKKHNFDPCHPTGPIVARYLADLHLIDKLSYNTILLHKSVVA
FT                 TLSNAEDAGRISSHTFVKHVLKSIALKKPITRKPPVWNIDALTSFLSSNTI
FT                 DGNNAFAVSRHTATLLLLCSGRRVHDLTLLLVDSDHCVDDGSSIVLKPIFG
FT                 SKTDSATHRQSGWKLLPNASDKNLDPVFWVRKMIVLLRDRRVSGNCPNLFI
FT                 NIRGQAKAASRTVIAGWVKTVLTEAGIPVTPGSLRSAVSSKNWSDNLPLDE
FT                 ILSRGNWSSKDTFTRFYRREVMPAPASNSITRMFNAAD"
XX
SQ   Sequence 5377 BP; 1471 A; 1242 C; 1172 G; 1492 T; 0 other;
     tattaaatcc atgaccgtta tttgaagctt actatttgag ataggccctt tccgttttcc        60
     ggttatatat ttccttctcc ttcactcctt tacgtctgtc tcgctcgcac actccccacc       120
     aggcaggtcc gagctcagtc ggaggctcga aggcatatca tgaatcattg gcgtcttgtt       180
     ttccggccag tacggttgtc ttcaccaaca aaccgtaaat aaaagtatcg ctgcgcgcga       240
     taatttattg ttatatatat aaaattaacg gttttaccgt tcgtttttta aattcgatta       300
     atatagctgt tgtaattcga attgattact aaggtatgta acctgttttt aacgttattt       360
     ttctgttctt tttagtgaca tttacctatt gttccttctc ctggtctcgg tgtagtgtct       420
     atttatactg tgtcttactt gtaaatttgt gttttacaga tacctaccta tcttttggaa       480
     agtttttact ttcaggatgg atgatataga caataataca tgtgtgaccg ctattattga       540
     ggagccgcga cacgatttat cgcgggattg tgtaccaaag ccaactcaat ccagctctcg       600
     gaaacgtgca cgctcagtta gaagttcatc cagtagcagc cactcttcgt caagtgatac       660
     cacggattcc acgtcctcct ccgaccgaaa gaagaaacgt ggccacaaaa gaaggagggg       720
     caaacacagt cgtaaatcac gaaaagacga tcggcagatg cacaagttat ttcgagaggt       780
     gagtgcatta cgtcagcaaa tttctttaac atcggtagtg ccttgtggtg gcgttgagcc       840
     cccgtcagtt gtagacaatg acttatcgat tgatgatagt gtcagtggaa tcttgtataa       900
     ggaggttagc gacacgtgca ccagtgaacc ttgtcaagtt gaactaccgt ttaattttga       960
     tattgaaaca aagctgaagg aacctgcgta ccctaaagca ccagaaaact tgttgaaatc      1020
     tcttcaggat atacaacatt ttaacaaaag tgaatggagt gaggttaggt attttgaagt      1080
     gcaaaaatca tattgccata aacctggttt tattgaccta gaggccaatg aggagattcg      1140
     tgtgtatgat cagtcgcgct ttttggcctc tattgacaaa gcttacgccg ctctcacctt      1200
     ttgtgcactg aaacaaaggc aggccttatc atctaccctg acagaactac tatcctgggc      1260
     tcacgcagaa caggatttaa attttaatag cttgcaggac aagatcacgg aggttttttc      1320
     taaaggtgat ttccataaag tgtcttctga tttattgcag cttatctgtg gacacagagc      1380
     ggaagtttta caaaagcgcc gagccggaat aactaatcag gttcgtgatc ctttaatgag      1440
     ggcaacgcta agcaagatcc caccatcgga ccggcattta ttcgaatgtg aagcgtttac      1500
     cgctgccctt gagaagatgg gcggagttaa gaagactttc tggcccttat ctaaacctac      1560
     aagtggctcc gttgcgcaag caggaccaag taatgttaca cgccaccccc cccaggggtc      1620
     ggctcgctat catggaccct cgcagggtac cagccatgga tgctgcgcct ctttgcctca      1680
     tccacattat caataccgcc agtcctcaca ggactgctat catgaacgcc ctcaacaaca      1740
     gaacaatctg agtgaccgtc gcacggcgcc tgcaagtaac aacagaagtt catttcgctc      1800
     acgaggtggc cgccaaacct acaagccgca gagtcagggc aaaggaaacc gtaaacgccc      1860
     cggagtctcc tctgactata actctgggaa caaaaatcgt aagtactgac tcgataaaat      1920
     tcagggcggg tcaactggca cgattttaca atcgatggga ggaaatgggg gctccaaact      1980
     ttctgttgcg cataataaca gggtatcgca taccctttct tctaaaacca cccctaatct      2040
     ggccacattt gaggaaaggt ccttacatca cacaggagtc cgaatcgatg tcggcactca      2100
     tcagtcagat gaaagaccaa ggtgtgttag aagcagtgcc gctttccccg agcttcctgt      2160
     caaccatgtt tcttgtgcca aagagcgatg gctccgatcg cccaatattc aacctaagag      2220
     ccttaaacaa ctatgtaaaa acggaaccct tccgcctgat aaatgtattt cgtgtaccag      2280
     agttccttca gccaggcgac tggctttgca aaatagacct atcgcaagcg tactttcatt      2340
     taccgatttc tccggcacac aggagatttt tgcgcctcat ttatcaaggg gaacttttag      2400
     aaatgacctg cttacccttc ggcctcagta cagcaccgaa ggtgtttgct tccctgagca      2460
     actgggtcgc tcagacattg cgggagcaga atctgcgcat aattgtctat ttagacgatt      2520
     ttctggtggc tcatcaagac aaagacactc tgcaaactca tgttcatact ctcctgaacc      2580
     gtctggaata tctagggtgg caagtcaacc taaagaaatc tgttgtattc ccgcagaaga      2640
     gtcttgtgta cctgggagtt cagtgggatc cctgggacaa cacaaaatcc cttccacagg      2700
     acaaggtcga aaacgttatt cacaaggtct ctttaatgct aaacttaggc aaggcttgcc      2760
     tgcaagaatt acaaagccta gtgggccttc taaactttgc gagttttgta gtaccacagg      2820
     gcagactaca tcatcggtct ctgctcagct tcctaaatgc gtctctgact atgccagtca      2880
     ggaaggagat ccccttacca gacgaagtcc taggagatct ccggtggtgg cttcacaact      2940
     gccaccagcc atctgctatc catctgccac caccaactca ttttgtgacc acagatgcct      3000
     ccgatctggc ttggggagct caggtggaca gttatgcagt gtcgggtacg tggaccgctc      3060
     aagaacggca tctacattgc aatctcaagg agatgttggc gatcttaaag gtgctcgaat      3120
     cccacgggcc tgtaatgggc aggtccactg ctctgtttca gtgcgacaat cgaacagttg      3180
     tgtcccactt gcgaaacgag ggcggtacga ggtcaccatc tctaatggaa gtaactcgga      3240
     gagtgttcag cttactagag tttcatcaaa taaatcttac agtcagttat atacccggca      3300
     tttacaacgg acatgcagat cacctatcca gacacaaacg agctccagag tggcatcttc      3360
     tacccgcatg cacggacaag atatttcaca agtttggtat tccggtagtg gatctatttg      3420
     cgtccagtcg ggcaaaggtg gtatccaact acgtgtcttt ggatttaaca gacacccaag      3480
     ctttattcca caatgccttt tcccggcagt ggaactacca cctggcgtgg gtgttcccac      3540
     caccgtacct aatacccaag gtgctagccc atctcaactc ggcgatcggg ctgtacctgt      3600
     taattgtccc ccggtggggt cgagtgttct ggcgggccga tctcaaagcc cgagcagtag      3660
     cagctccgtg gtcgatcacc aatctcaggg agaatataat agacaccacg accggcctgc      3720
     caccccccaa ggttcaagag atggcgctcg aagtatggaa gtgtgggggt ggtcgaaaag      3780
     tttaacaggt tggaatgaag accaaatact attacttaaa gcctcgtggc gtccttccac      3840
     tcttagaacc tacaaggtag catgggatcg atgggtatct tggtctaaaa agcataattt      3900
     tgacccttgt catcctacgg ggcccatcgt tgctagatat ctggcagacc tacatctaat      3960
     cgacaagctt tcttacaaca ctattttact tcataaatcg gtggtggcta cacttagcaa      4020
     tgctgaggat gctggacgaa taagttcgca tacatttgtt aagcacgtct taaagtcaat      4080
     tgctttaaag aagccgatca cccgaaagcc tccagtctgg aatatagatg cactgacctc      4140
     cttcttaagt tctaacacta tagatggaaa taacgctttt gctgtttctc ggcatacagc      4200
     aacactcctc ctcctgtgct cgggcagacg agttcatgac ctcacattgc tgttagtgga      4260
     ctcagatcat tgcgtcgacg atggcagcag catcgtttta aaaccaatat ttggctctaa      4320
     aaccgacagt gccactcata ggcaatcggg ttggaagtta ctgcctaatg ccagtgataa      4380
     aaatctggat cctgtttttt gggtaagaaa aatgattgtt ctccttaggg atagacgagt      4440
     ttcgggtaac tgtccaaact tatttataaa catcagagga caagcaaagg cggcatctcg      4500
     tactgtgatt gcgggatggg ttaaaactgt actaaccgag gctggtatac ccgttacacc      4560
     gggaagtcta cgttcagctg tgtcttcgaa aaattggtct gataaccttc ctctcgatga      4620
     gattctgtcc agaggaaatt ggagttccaa agataccttt acacgtttct acaggcgaga      4680
     ggtaatgcca gcccctgcta gcaacagcat tactagaatg tttaatgcag ctgattaaaa      4740
     tttgattttc aatacctatt gatctgttga ttattacaat gctgatgttt gttattaccg      4800
     atttgttaat tattgttttt tttttgtttg tacaaggtaa atattatgtt ttattgaata      4860
     aaaaacttga ttctaagaaa agcatttttt atttctggca cactctgaag ctgatacagc      4920
     tggttggtta tgtaataata catcaccctt caaataattg ctaatctata tctaattgtt      4980
     tttattttat ttttctgaag tcagtcaaac ttatttcaca ttggcgtccc caccaccagg      5040
     cgataacaaa cacgtctcaa atagtaagct tcaaataacg gtcatggatt taatagcagc      5100
     gttttacctg aaataaaacg catattaaat acttacctta tttgaagctt acaaataatt      5160
     tctgcctggt attttcgact caatgattca tgatatgcct tcgagcctcc gactgagctc      5220
     ggacctgcct ggtggggagt gtgcgagcga gacagacgta aaggagtgaa ggagaaggaa      5280
     atatataacc ggaaaacgga aagggcctat ctcaaatagt aagcttcaaa taaggtaagt      5340
     atttaatatg cgttttattt caggtaaaac gctgcta                               5377
//
ID   DIRS-4_MSe  repbase;    DNA;    INV; 4975 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4975
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 550-550 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 191-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..1453
FT                 /product="DIRS-4_MSe_1p"
FT                 /translation="MADENVENVQQISNSPREAANRLITPEIAMSSSDTSS
FT                 DSEEEGIASSPPNKRPRQSSLQSQYSGMQTEYNDPRIDSLISQVSYITQYL
FT                 EACSRNTRSSPTRIQTSNFLEMPTPSSTLNIELGDLNTAFDENKIIPPANT
FT                 ERLKDLIRLQQFGTPAWKGIRYKKPLRTVIATPGFTALKVNEELCHLCPAK
FT                 DYLASTEQVLAGLSNTVLEQRQLMQSGLQDLLNWASNNPLELTPTNLYNQM
FT                 TQTFGPGSPVYKNSELTMQIICGKRAECVEIRRDQLLKQITNTNLKATLKS
FT                 VPPCSEYLFSREALAPIIKSLGGTQVWLNTPTYVKQASTPGTSQTHKPQST
FT                 FISNKRYDHNKEGRPVHQSNRVNKKQVTHKTNPKRNQPFRGNTRTSQGAQK
FT                 "
FT   CDS           1368..3341
FT                 /product="DIRS-4_MSe_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="IKSRLLTRLTQREISPFVETPALVRVHKNDNHIIFRA
FT                 GCLREHVKSWVQFKANQFILKTITNCRIPFIRKPSLAIPNHQIMKAYSTKV
FT                 SLTMTKMISKLKEQRVLERPTCALAGFHSKMFLVKKSDGSLRPIFDLRNLN
FT                 TFVSTRHFQLVSQVTVKEFLQDQDWLVKIDIHQAYFHLPISEAHRRYLRII
FT                 YDGEILQLTALPFGLSSAPRTFAAISNWIAEILRARGIRVLVYLDDYLLVN
FT                 QDRSRLVAQVSETLGILETLGWHINYQKSITEPTQKLEYLGLLWDTRNMMM
FT                 TLPVKKTLKINQTLITLLKKGHCTLNELQKVLGMLNFASFTVRAGRLHCRR
FT                 LQIFLRRFTHNRPRERKPFPLLASLELQWWRSSINKNGTSLHKKPIRYFLT
FT                 TDAADAGWGAHLDRFYLAGQWTPDQRVWHSNLKELYAVYGAIRRYKDMLKD
FT                 AHILVQTDNRTLVAYIRNEGGTRSVALLTLATKLLSLTYHLNVTLSAAYLP
FT                 GKLNGIADRLSRGRTLPEWHLLPQATEAIFLKWGIPDIDLFASERSAVVPR
FT                 YVTLDSRDGCAEYYDAFSHQWEWNLAWVFPPPNLIPQVLAHLNQARGCYII
FT                 IAPMWTQCYWLPDLKSRALTTPLPIPNLENNLIDLSTGLPPPQTKELTFLA
FT                 WKVGGGKSR"
FT   CDS           1457..4291
FT                 /product="DIRS-4_MSe_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="QSHNFPSGLFERTCEVMGSIQSQPIHIKNNNKLPHTI
FT                 HQETFTGYTKPPDNEGILNKSFSDYDQDDKQIKGAESVRETNMRTCWVPFK
FT                 NVFSEKIRWLSKTNIRFKELEHLCLNSTFSAGFSSNSKRIPARSGLACEDR
FT                 HPPGIFSLTNFGGSPQVPPYYLRWRNLATDGTALWPVFRPQDLCGHIELDR
FT                 GDPSGQRHSCSSIPRRLPFSQPGPIQVSCPGFGDSGHPGNPGLAYKLPKIY
FT                 NRAYSKVRIPRSTLGYKEHDDDTTSKEDIENKPNIDNTSKEGPLHAKRTAK
FT                 STRNVKLCKFHSQGRQTALSEATDISQALYSQQAERKEAFPTTSLLGAAVV
FT                 EKLHKQKWHLPTQETDKVLSHHRRSGCGLGSTSGPILSGRTMDSRSESMAF
FT                 KSQGAICCVWCNKEIQGHAKRCSHFGSDGQSNLSGLYKKRGRNKISSALNS
FT                 GHQTSQSNLSPQCDSIGSLSSRKVKRDSRPIVKRTDTTRVAPLTTSHGGNI
FT                 SKVGHPRHRLVRFRKKRGSTKVCNLRLKRWLCRILRRLQPPVGVESSLGIP
FT                 STESHPPSPSTSQPSQGMLHNNSTNVDSMLLATRPEIKSSDNTIANTEPRE
FT                 QSNRPVNRSTSPTNEGIDFSSMESWGWQKQVAHWNEEEKKLLSASWRESTL
FT                 LTYGPPIRRWILWCKTKNINHRSPCSNDVARFLASLHLEKNFSYNTILLHK
FT                 SAISTYYANKEEKLTSNFYVQQILRAIALAKPKPRKQPIWDIQLLFNWLKS
FT                 TPNKFTLFDISRRTALILLLSSGRRLHDLTLLKISQEHFILKNNEIILWPI
FT                 FGSKTDSASHQQSGWRLLRHPDSTICPVFHIEKLIQISESRRSEKQLDDLF
FT                 ISVKGIIKPATRTIIAGWIRSIFKLVDIEATPGSIRSAVASRGWLEQMPIE
FT                 EILNRGNWKNAQTFKNFYCRPVNLSNNVEKADLLASNFSSI"
XX
SQ   Sequence 4975 BP; 1634 A; 1020 C; 954 G; 1367 T; 0 other;
     tattatgtgt ctttataaaa cacacagcgt tgagatgaag aagcagtctg tgaatccttg        60
     ctaataataa gaaaatatat aaaatcttac cggatgctct atggtaacct tagataatct       120
     caccaggaag gagcgctgtc actgtcaagt ggcgctaaca tagtctgtgg ttctgacgta       180
     tagaccatag cgtttgtgaa ttttgccgcg taaccgtcga aaattcttgt aactatttaa       240
     agagttatta aaactagtta aaagtgttaa aatggctgac gaaaatgttg aaaacgttca       300
     acaaatttca aatagtccgc gggaagccgc gaatcgtttg attacaccag agatcgcaat       360
     gtcgtcgagc gatacttcgt cggactccga ggaagagggt atagcttcgt cgcctccaaa       420
     taagcgtcca cggcagtctt cgctgcaatc acaatattca ggtatgcaaa ctgaatataa       480
     tgacccgcgt attgattcct taatatcgca agttagctac ataactcaat acctagaggc       540
     atgtagtcgg aatacgcgga gtagtccgac tagaattcag acatcgaact ttcttgaaat       600
     gccaactcct tccagtactc taaacattga attaggagat ttaaacacag cttttgatga       660
     aaacaaaatc attccaccgg ctaatacgga acgacttaag gatttaattc gccttcaaca       720
     gtttggtact ccagcttgga agggtattag gtataagaaa ccgttaagga cagttattgc       780
     cacgccgggt ttcacagctt taaaagtaaa tgaagagctt tgtcacttat gcccggcaaa       840
     agactatttg gcctctacgg agcaagtact agcaggtctt tcaaatactg ttttagagca       900
     aagacaattg atgcaaagtg ggttacagga cttattaaat tgggcttcaa ataacccact       960
     ggaacttaca ccgactaact tatacaatca aatgactcaa acatttggtc ccggatcacc      1020
     tgtttataaa aattctgaac ttacaatgca aataatttgt ggcaagaggg ctgaatgtgt      1080
     ggagatccgt cgtgatcaat tattgaagca aatcacaaat acaaatttaa aagctacact      1140
     aaaaagtgta ccaccttgtt ctgaatatct gtttagtcga gaggccttag caccaattat      1200
     aaagtctctt gggggaactc aggtctggtt gaacacacca acttatgtta aacaggcctc      1260
     cactccggga acctcacaaa ctcacaagcc ccagtcaaca tttatttcta ataagagata      1320
     tgaccacaat aaagaaggtc ggccagttca ccaaagcaat agggtgaata aaaagcaggt      1380
     tactcacaag actaacccaa agagaaatca gccctttcgt ggaaacaccc gcactagtca      1440
     gggtgcacaa aaatgacaat cacataattt tccgagcggg ttgtttgaga gaacatgtga      1500
     agtcatgggt tcaattcaaa gccaaccaat tcatattaaa aacaataaca aattgccgca      1560
     taccattcat caggaaacct tcactggcta taccaaacca ccagataatg aaggcatact      1620
     caacaaaagt ttctctgact atgaccaaga tgataagcaa attaaaggag cagagagtgt      1680
     tagagagacc aacatgcgca cttgctgggt tccattcaaa aatgttttta gtgaaaaaat      1740
     cagatggctc tctaagacca atattcgatt taaggaactt gaacaccttt gtctcaactc      1800
     gacattttca gctggtttct caagtaacag taaaagaatt cctgcaagat caggactggc      1860
     ttgtgaagat agacatccac caggcatatt ttcacttacc aatttcggag gctcaccgca      1920
     ggtacctccg tattatttac gatggcgaaa tcttgcaact gacggcactg ccctttggcc      1980
     tgtcttccgc ccccaggacc tttgcggcca tatcgaattg gatcgcggag atccttcggg      2040
     ccagaggcat tcgtgttcta gtatacctag acgattacct tttagtcaac caggaccgat      2100
     ccaggttagt tgcccaggtt tcggagactc tgggcatcct ggaaaccctg ggttggcata      2160
     taaactacca aaaatctata acagagccta ctcaaaagtt agaataccta ggtctacttt      2220
     gggatacaag gaacatgatg atgacactac cagtaaagaa gacattgaaa ataaaccaaa      2280
     cattgataac acttctaaag aagggccatt gcacgctaaa cgaactgcaa aaagtactag      2340
     gaatgttaaa ctttgcaagt ttcacagtca gggcaggcag actgcattgt cggaggctac      2400
     agatatttct caggcgcttt actcacaaca ggccgagaga aaggaagcct ttcccactac      2460
     tagcctcctt ggagctgcag tggtggagaa gctccataaa caaaaatggc acctccctac      2520
     acaagaaacc gataaggtac tttctcacca cagacgcagc ggatgcgggc tggggagcac      2580
     atctggaccg attttatctg gcaggacaat ggactccaga tcagagagta tggcattcaa      2640
     atctcaagga gctatatgct gtgtatggtg caataaggag atacaaggac atgctaaaag      2700
     atgctcacat tttggttcag acggacaatc gaaccttagt ggcttatata agaaacgagg      2760
     gcggaacaag atcagtagcg ctcttaactc tggccaccaa acttctcagt ctaacttatc      2820
     acctcaatgt gactctatcg gcagcctatc ttccaggaaa gttaaacggg atagcagacc      2880
     gattgtcaag aggacggaca ctaccagagt ggcacctctt accacaagcc acggaggcaa      2940
     tatttctaaa gtggggcatc ccagacatag acttgttcgc ttcagaaaga agcgcggtag      3000
     taccaaggta tgtaacctta gactcaagag atggctgtgc agaatactac gacgccttca      3060
     gccaccagtg ggagtggaat ctagcctggg tattccctcc accgaatctc atcccccaag      3120
     tcctagcaca tctcaaccaa gccaggggat gttacataat aatagcacca atgtggactc      3180
     aatgctattg gctaccagac ctgaaatcaa gagctctgac aacaccattg ccaataccga      3240
     acctagagaa caatctaata gacctgtcaa caggtctacc tcccccacaa acgaaggaat      3300
     tgacttttct agcatggaaa gttgggggtg gcaaaagcag gtagctcact ggaatgaaga      3360
     agaaaagaaa ttattatcag caagttggag agaatccacg ctcttaacat atggccctcc      3420
     tattcggaga tggattttgt ggtgcaaaac aaaaaatatt aaccacagat caccttgtag      3480
     taatgatgta gctagatttt tagctagtct tcatttagag aaaaactttt catacaatac      3540
     aattttgtta cacaaatctg ccatttctac atattatgcc aacaaggagg agaagttaac      3600
     ttctaacttt tatgtacagc aaatcctaag agcaattgca ttagcgaaac caaagcctag      3660
     aaaacaacca atatgggata ttcaactact ttttaactgg ttaaaatcta cacctaacaa      3720
     atttacactt tttgatatat ccagaagaac agctttaata ttactcttat catctggccg      3780
     cagattacat gacttaaccc ttttgaagat ctcacaagaa cattttatct taaagaataa      3840
     tgagataatt ttatggccaa tatttggttc caagacggac tcagcctcac atcaacagtc      3900
     cggctggcgt ctattgaggc atcctgactc tacaatttgt ccagtttttc atatcgaaaa      3960
     attgatccaa atttctgaga gcagacggtc tgaaaaacaa ctagatgatt tatttatatc      4020
     tgtaaagggg ataattaagc cggccacaag aactattatt gcaggatgga taaggtctat      4080
     tttcaaattg gttgatatag aagctactcc gggtagtata agatcagcag ttgcttctag      4140
     aggatggctt gaacagatgc ccattgaaga aatacttaat agaggaaatt ggaagaatgc      4200
     ccagacattt aaaaactttt attgtcgacc agtaaattta agtaataatg ttgaaaaagc      4260
     tgatttatta gcctcaaatt tctcttcaat ttgaataatt atgtttgtta actttaatac      4320
     tagatcaaga gctagttaag gtacacacag agtattgcta tatacataaa taatgtttaa      4380
     tagtctctaa tatttcattt tgatctcatt tatgtttcaa catagaaatt aatacttata      4440
     attcattttg atctcattta tattacatgt tacatttaca tactactgat actttaattc      4500
     gtagtgatct catttatgtt atttcttaga atttattgat tgagtgtgat aataattaat      4560
     aatatattat tttggtaaca taatcacata gcgtttgtat tacttttcac cagcagatat      4620
     caaacacatc ttcatctcaa cgctgtgtgt tttataaaga cacataatat tgatgttttg      4680
     cataaaaaca aaacatgtat tatgtgttga ttaaaacaca cagcgttaca gtgtactgct      4740
     tgctgatgaa gatgctatgg tctatacgtc agaaccacag actatgttag cgccacttga      4800
     cagtgacagc gctccttcct ggtgagatta tctaaggtta ccatagagca tccggtaaga      4860
     ttttatatat tttcttatta ttagcaagga ttcacagact gcttcttcat ctcaacgctg      4920
     tgtgttttaa tcaacacata atacatgttt tgtttttatg caaaacatca atatt           4975
//
ID   DIRS-4_SiOr repbase;    DNA;    INV; 5034 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5034
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 7-7 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 150-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           875..1498
FT                 /product="DIRS-4_SiOr_1p"
FT                 /translation="MRWSEFLRKGVEKDDKKALIDSYPIVGNCKELLAPKL
FT                 NMEIATCLNESLNRQDMYLSRIQDEIGVAISALGKPLGNCFPNPSEQSNEF
FT                 LKPSIDAAKILTNVHHSISTHRRHVILPHLNSSVRKIIEDYPIDEFLFGDK
FT                 FAEKLKSSKEIQKTSSDLRLQNPSTSSKNYQRPKYKSKYKNQWNYKAKGRN
FT                 TQGVSYNQARLKKKRTQY"
FT   CDS           3306..4349
FT                 /product="DIRS-4_SiOr_3p"
FT                 /translation="NLTFIAFQETSPLMADNYPGCRPFIREAFVKKGFPEE
FT                 AIASIVASVADSTLKQYDTWFKKWWGFCCDINHDKWSYDLTTFIKFLSIQV
FT                 DNSNSYSSINACKSALSFVLPIDTRDEGIIKRYLKGIYNQRPPRPKYNTTW
FT                 DPHPVLSLLENMFPLSTLSLEKLSHKLVTLLAIITAHRVQTFSKIRLSYIN
FT                 QFDDRIEILIPDTVKTSGKNKFQPVLKLPFFRDKPGLCLASTVLFYLNTTK
FT                 SLRADNNDYLILTHRKPYHTATSQTISRWIRSTLKSAGVDTSKFSGHSTRH
FT                 ASTSAAYRGGVNIEEIRKYAGWTEKSNVFNKFYNKPISTPADLFAKGVLQG
FT                 SSITC"
FT   CDS           1348..3393
FT                 /product="DIRS-4_SiOr_2p"
FT                 /translation="ITEPLHQFKKLPAPQIQVQIQEPMELQSEGSEHPRGL
FT                 IQPSPAEKEKDPILMVSIKNDPHMCVGKTRSRLHYWEMLTSNPQVLSWLRG
FT                 IKFNFISSPPTRHSIKEPKLTRLEHENCKKLIDSMLEMGAISRCTSSKTQY
FT                 VSSYFLRQKTNGEYRFILNLKSLNCHLEAPHFKLEDYRTAIKLTYPGCFFT
FT                 LVDLRDAYFSIQINEKYRKFLRFCFQNELFQFNSLPFGLCSAPFIFTKIMK
FT                 PVLHFLRTRDIICVCYLDDFFLISPTMEKSKKDITLTLQVLTNLGFNVNYD
FT                 KSQLNPNNTCCFLGFFIDSKNMRLSLPSEKSQLIISLINDVLLIRICSIKL
FT                 FAKIIGHLVAACPAVRYGPLYIKSLEGEKYKALKSGKSYNHNISLSRGVRS
FT                 DLEWWQNSLACSYVPIFQGNYDITIFTDASNSGWGGSCNNENIHGFWLQEE
FT                 SKNHINWLELAAAFHCLKAFTKSFTHMNILLKIDNVTAIALINKMGSVRHR
FT                 KLNTITRHIWQYCESKGLYIFATYISSKNNKQADSESRCKNIDTEYELNNI
FT                 HYKRLCRIHGTPQIDLFASRINAKCARYNSWKPDPGASGTDSFTTCWSQDF
FT                 FYAFPPFSLILKMLNKIIMDKAEGLVVVPWWPTQPWFPLFKRLVVGKILFF
FT                 KPSKTLLLSPFRKPHPLWRTITLAAGHLSGKPL"
XX
SQ   Sequence 5034 BP; 1678 A; 1009 C; 910 G; 1437 T; 0 other;
     attacacttc tcagttttgt cctcgtacta cataaaagga atacaaatag agtaagtctt        60
     gtcttgctga aatccgtgcg acatacaaaa ataaacgtgg caacgccgct ccgcaccgtc       120
     ctcgccgcga ctcgccccac caatgtcatt ataagttttg tcgtcaacga ggttcgtgcg       180
     tcgagtgttt tgtaaagtgt tttttacgtg tttacggcga aatgggtaga aacaggtcca       240
     aaaatgaaat taaaaagagg ctgaaacgga agcagaatcg cctaaaccaa ctttgggagc       300
     gtttagagga tgtatcaagt aagtattatc agttttttca taacctaggt aaaacagtgc       360
     acatggaaac gggggggggg cgtgttttca gtaaattatc gcctctatac tctctggtta       420
     accatacttt aaataaagaa ttgcacaact acgtgtgaat tttaatatct aacctaacct       480
     aactccttga cccagtggtc ttgcgaagta tggttgacag taatattttg tttgaaggcc       540
     cagtggtcaa caaacttaat aattatgcgt ttcattgcag gcgatgacgc atcatcctcc       600
     ggcagtgatg attcttccag tgaagataat cactctggtt ccgaaagggg aaggcggagc       660
     ccagtgaatc tcccgcttga acccatcgat agcccggcga taaatgcagg cagtaacaaa       720
     ccaaacacct cggacgcaat aattacctta ttaggtatat acaaaagtta cccaacagtt       780
     tgggaaacaa taataaatgt aattatttat tatcataggt aaacaaccaa accttaccca       840
     acagtttgga gaaaacattc acgaagatat tgtaatgcgc tggagcgaat ttctaagaaa       900
     aggggttgaa aaagatgaca aaaaagcttt gatcgacagt taccctatcg taggaaactg       960
     taaagaatta ctcgcaccta aactaaacat ggaaattgca acatgtttaa acgaaagctt      1020
     gaaccgacaa gacatgtacc ttagtaggat acaagacgaa attggggtag ccatctccgc      1080
     tttagggaaa cctttaggca attgcttccc taatccaagc gaacagtcta atgaattctt      1140
     aaaacccagt attgatgcgg cgaaaatctt aactaatgtc catcatagca tatctacaca      1200
     caggcgccat gttattctac ctcatctgaa cagctcggtg aggaagatca tcgaagacta      1260
     cccaatagac gagtttttat ttggggacaa gtttgcggag aaactgaagt catccaagga      1320
     aatacagaag acgtcctcag atcttagatt acagaacccc tccaccagtt caaaaaacta      1380
     ccagcgcccc aaatacaagt ccaaatacaa gaaccaatgg aactacaaag cgaagggtcg      1440
     gaacacccaa ggggtctcat acaaccaagc ccggctgaaa aagaaaagga cccaatatta      1500
     atggtgagca taaaaaatga tccgcacatg tgtgtcggca agactagatc tagattacat      1560
     tattgggaaa tgctgacaag taaccctcaa gttttaagtt ggttaagggg aattaaattt      1620
     aacttcatat catccccccc tacaagacat tccattaaag aacctaagtt aacacggtta      1680
     gaacatgaaa attgtaaaaa attaattgac agcatgttgg aaatgggcgc catttcccgt      1740
     tgtacaagtt caaaaacaca atatgtttct tcatattttc taagacagaa aacaaacggt      1800
     gagtaccgtt tcatacttaa tttaaaatct ttaaactgtc acttagaagc cccccacttt      1860
     aaacttgagg attatcgcac tgccattaaa ttaacatacc ctggttgttt ttttacccta      1920
     gtagacttaa gggatgcata tttttcaata cagataaatg aaaaatatag gaaatttttg      1980
     cggttttgct ttcaaaacga actatttcaa tttaattcct taccttttgg tctctgttcg      2040
     gccccgttca tctttacaaa gataatgaag cccgtacttc atttccttag aacacgtgac      2100
     ataatctgcg tttgttattt agatgatttt ttcctaatca gccctactat ggagaaaagc      2160
     aaaaaagaca tcaccttaac cctacaagtg ttgacaaatc ttggttttaa cgtaaactac      2220
     gataaaagcc agttaaatcc caataatact tgttgttttt tgggcttttt catagattcg      2280
     aaaaacatgc gtctttcgct accctcagaa aaaagccagc taatcatatc tttaatcaat      2340
     gacgtgttgt taatacgtat ctgttccata aagcttttcg ctaaaataat tggtcactta      2400
     gtagcagcct gcccagcagt aaggtacgga ccactgtata taaaatctct cgagggggaa      2460
     aagtataaag ccctaaagag cggaaaatca tacaatcata atatatcctt atcgcgaggg      2520
     gtcagatcag accttgagtg gtggcagaat tcattagcat gttcatatgt tccaattttt      2580
     caaggcaact acgacatcac tattttcaca gacgcttcaa acagtggttg gggcggtagt      2640
     tgtaataacg agaacattca cggtttttgg ctacaagaag aatcaaaaaa tcacataaac      2700
     tggttagaat tggcagcagc ttttcattgt ttaaaagcgt ttaccaagtc ttttacacat      2760
     atgaacatac tattgaaaat agataacgtc actgccatag cattaattaa taaaatgggt      2820
     agcgttagac acagaaaact taacactatt accagacata tctggcaata ttgcgaatca      2880
     aaaggcttat atatttttgc aacatacatt agctctaaaa ataataaaca ggcagattct      2940
     gagtctcgct gtaaaaatat tgatacggaa tacgaattaa ataatattca ttataaacgc      3000
     ttatgccgca ttcatggaac tccgcaaata gacctttttg ccagtcgaat taacgcaaaa      3060
     tgcgcaaggt ataattcttg gaaaccggat ccgggagcat cgggaactga tagttttacc      3120
     acatgttggt cacaggattt cttttatgcc tttcccccat ttagcctaat attaaaaatg      3180
     cttaataaaa tcataatgga caaggcagaa ggtctagtcg tagtaccatg gtggcccaca      3240
     caaccttggt tccccctgtt taagagattg gttgtgggga aaatattatt ctttaagcca      3300
     agtaaaacct tacttttatc gcctttcagg aaacctcacc ccttatggcg gacaattacc      3360
     ctggctgccg gccatttatc agggaagcct ttgtaaagaa agggtttccc gaagaggcca      3420
     ttgcatccat agtagcatca gtagctgaca gtacactaaa acaatatgac acctggttta      3480
     aaaaatggtg gggtttctgt tgtgacataa atcacgataa atggtcctac gaccttacta      3540
     cctttattaa atttctaagt atacaagtag ataactctaa ctcttattcg tccattaacg      3600
     cgtgcaagtc agcattatcc tttgtactcc ccatcgacac tcgagatgag ggaataatta      3660
     aaagatactt aaaaggcatt tataaccaaa ggccaccaag gccaaaatac aatacaacct      3720
     gggatcctca cccagtactg agtctgttag aaaatatgtt tcctttaagt actttatcct      3780
     tagaaaagtt atcacataag ttagttactt tgttagcaat tattacggcg catagagtac      3840
     aaacattctc aaaaattaga ttaagttata taaatcagtt tgatgatagg atcgaaatac      3900
     tgatcccaga taccgtcaaa actagcggga aaaataaatt tcaacctgtg ctaaagttac      3960
     cattctttag agacaaacca gggttgtgtt tagcatctac ggttttattt tatctaaaca      4020
     caactaaaag cctccgcgcc gataataatg attatttaat actgacacac aggaaacctt      4080
     atcatacggc cacaagccaa acgataagta gatggatccg ctcgactcta aaatccgcgg      4140
     gtgttgatac aagcaaattt tcaggccaca gcactcggca tgcctcaact tcggccgcat      4200
     accgaggcgg agttaacatt gaggaaataa gaaaatatgc aggatggact gaaaaatcaa      4260
     acgtttttaa taaattttat aataaaccaa tatcaacacc ggcggatctc tttgcaaaag      4320
     gggtcctcca aggatccagt attacctgtt aaaataagag ttccttactt taagatttag      4380
     tgcgttctgt tccttgtaat tacgttatat acctatatgt ttgttacaat gtaaacatac      4440
     agtttaatgg ttatattatt atatttcgtt acacaccttt aaaaggtgcc tttcctataa      4500
     atatatacaa attacttaag tatatattat acaaagctta tagggaataa agctattttc      4560
     tagagatcgt cttttcattc tctaaacagc tactctattt gtattccttt tatgtagtac      4620
     gaggacaaaa ctgagaagtg taattaacag atcaaatgac ttacctgtag gaaatttgat      4680
     cctaattaca cgatcagttt tgtccgaagt actacataac ccacgccatc ttataaaata      4740
     ataacagtga taattaatat tatgtatgaa ccacatcaca actataccta gagccttggt      4800
     cactcccacc cctcacaagc cgatctctta tcaaaactta taatgacatt ggtggggcga      4860
     gtcgcggcga ggacggtgcg gagcggcgtt gccacgttta tttttgtatg tcgcacggat      4920
     ttcagcaaga caagacttac tctatttgta ttccttttat gtagtacttc ggacaaaact      4980
     gatcgtgtaa ttaggatcaa atttcctaca ggtaagtcat ttgatctgtt aatt            5034
//
ID   DIRS-4_SpEx repbase;    DNA;    INV; 5585 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the beet armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_SpEx.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5585
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 3797-3797 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 142-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1098..1940
FT                 /product="DIRS-4_SpEx_1p"
FT                 /translation="MDQVHAEEQEVEPVVDSIIIDEEEDMELSSDIVSALG
FT                 EVIGTQKEYGDDIHPSILKIIENILTEGLTKEQRETINKSALIPGNAKLLD
FT                 APKLNTEIIGLINQATRTRDTLMVARQQDLGLAIGTICQTIHDMTKKDYDK
FT                 IKIIKMLGESARLLSNLHCQYTNIRKRLISPFLDKALQLNLKDNKRTEFLY
FT                 SKLEETVKTTTAMKRAANILKPKNFSGNTVAMPKNYQQLRRPNPPPINRGI
FT                 NTNRGRSQQQTHNRRYQPHQPQKYPKRQQPLPSRPRAKYP"
FT   CDS           1691..3820
FT                 /product="DIRS-4_SpEx_2p"
FT                 /translation="DYHSYEESGQYTQTKKLLRKYCGNAKKLPTVETTQPT
FT                 SNKQRNQHKSREKPTTNTQQTVPAPPATEVPQATTAIAQPTPSQVPLEVNF
FT                 AARLKYYYTYWESFTKDPVILEWVRGYSIPFFCQPVQDKIPYNNSFNKSEL
FT                 QILNQEIIKLSKLGAISLCQPTADQFLSTIFSIPKSDGSHRFILNLKNLNK
FT                 FIITNHFKLEDIRTLCKLVIQEDFMCTIDLKNAYYLIAIKEDNRKYLRFTF
FT                 NNKLYEFNCLPFGLSTAPFVFTKLLKPVIEYLRTQGIRLVIYLDDIICLGS
FT                 TYEECIHNTNITRKLLENLGFVINKEKSLDVPLQCCEYLGFLVNSKTMTLS
FT                 PTLNKREKILSMINKYLKLKSCSIRDFATLLGNLVSVCMAISYGFRHTKTL
FT                 EREKFLALEESKGNYDHRLNLNSDIKTELFWWKKNIISRNNKIKQYNFILE
FT                 IFSDASLSGWGAHCDGQSTGGSWSEWERQQHINYLELLAAYFALRSFASTL
FT                 ENCEILLRIDNTTAIAYINRMGGVQYPKLNRIAQQIWQWCENKNIWIFASY
FT                 IKSKENKEADFESRNFNVDTEWELSHKIFNSIVKKFGQPNIDLFASRLNHK
FT                 CPKYVSWHRDPYAWNIDAFTIKWNNLFFYAFPPFSMLLKVLHKIRTDKATG
FT                 IIVYPIWPSQPWYPVLKALLVSDIMTIGPSDNTLTSPFRTPHPLHLTLGAC
FT                 ILSGKLSRGE"
FT   CDS           3706..4767
FT                 /product="DIRS-4_SpEx_3p"
FT                 /translation="YYDNRTIRQYSNISFQNSSSTSSYPGGVHIIRQAFKR
FT                 RMMSEEATDIMIASLSQNSLKQYNSCLRQWWSYTKEFKIDMYQASIPIIIS
FT                 YLTSMFNKGSSYQSLNCHRSALSLIIGNRVGSDDRIKRLFKGFFKLRPTKA
FT                 KYNSVWDPSKVLLHLRSWYPLDSLNLENLTKKLAMLIALATGQRVQTLFCI
FT                 NINNIKINNEGAVILITDILKTSGPNRRSLRLMLPFLSNKPEICPVKTLKM
FT                 YLDKTRIFRQEDKSLTKLFLTFRRPHKHATTQTISRWLKQTMHESGIDTSE
FT                 FTAHSTRHASSSRAHRQGLTVDSILQAVGWSSRSSTFANHYNRPLQDKNDI
FT                 QDDFARAVLNN"
XX
SQ   Sequence 5585 BP; 1984 A; 969 C; 957 G; 1675 T; 0 other;
     attatattcg aaattagtcc gaggtatata ttatatacct tatataatat atactagcag        60
     cagccgcctt ctgttgctct tcgacgcgat tttttagatt tagaagaaaa ataaaagcgg       120
     cacctggcaa cactgctatg ctttgtcatt cgttttcttc gcgctcgcaa gacgcatcgt       180
     aaaaattaat ggcaaagagt aaagtaataa atgattaatg gttaatagaa aataacatat       240
     tatttaattt gaagtgttta tttttaacca aatatgccaa aacgtaacag ggaagataaa       300
     gaatacaagg aaaataagaa aagaaggaaa ttggcaaaga agattgaaaa atacaaagcc       360
     aagatggcgg agcttgatcg taagtatatt tcaataaaaa actgtacaat tacagactat       420
     tatggtatta tgtgttacat tttacctact tctcgttgag aagttagtac tcacaccgtt       480
     tttacggttt ttaaaccttc aatacttgag tacctatcac tatcaagatc gagcacatgt       540
     ccttgtcctg taggtaggac tgtaggacga aaataacggc ataatgtgtt acatttgcct       600
     ccttctcgtt gagaaggtta tgctctggat tgtctaaaat aacaggcttc caacacgacc       660
     gttagccaag ggtaatttgt gttacatttt accaacctct cgttgagagg gtttttcgca       720
     ctaaacacct atctcttgag gctgaatgtg aaatattcaa gagtaatccc gggtatttcc       780
     tttcctataa tgagttaaat acatacaata ctatagtaaa ctctatagag tttgactaaa       840
     agaaaggaat taccagtatc aaatacacag tgtaaatacc cactcataac cgttgtttta       900
     gttgtataac atgattaccc aagcaaataa tttctgttat gatagactat atatacaaac       960
     actttctctg aacggttggg gtgggttagg tacctactag gtaccattgt ggtcagttgg      1020
     ataactattc cataattttt gctttagcac aagaaccaga gcaacaaagt gaagagtcta      1080
     attctttcaa cgaacaaatg gatcaagttc atgctgagga gcaagaagtt gagccagtgg      1140
     tggattctat tataatagat gaagaagagg atatggagct atccagtgat atagtttcgg      1200
     ccttaggtga ggtgattggc actcaaaagg aatatggtga tgacatacat cctagcatat      1260
     tgaagattat tgaaaacatt ttaacggagg ggctgacaaa ggaacagagg gagaccataa      1320
     acaagtctgc actcatacca ggtaatgcaa aattacttga tgcaccaaag cttaacacgg      1380
     agataattgg acttattaat caggcgacca gaaccagaga caccctcatg gtagcaagac      1440
     aacaagattt aggcctagct ataggcacta tttgtcagac aatacatgac atgaccaaga      1500
     aagattatga caagattaag attataaaga tgcttggaga gagtgcccgg ctactatcca      1560
     atctacactg tcaatacact aatataagaa agagacttat ctcaccgttc ctagataagg      1620
     ctttgcaact caacctaaaa gataataaac gaacagaatt cttgtattca aaactagaag      1680
     agacagttaa gactaccaca gctatgaaga gagcggccaa tatactcaaa ccaaaaaact      1740
     tctcaggaaa tactgtggca atgccaaaaa actaccaaca gttgagacga cccaacccac      1800
     ctccaataaa cagaggaatc aacacaaatc gagggagaag ccaacaacaa acacacaaca      1860
     gacggtacca gccccaccag ccacagaagt accccaagcg acaacagcca ttgcccagcc      1920
     gaccccgagc caagtaccct tagaggtaaa ttttgctgca cgtcttaaat attattatac      1980
     atactgggaa tcttttacca aagatcctgt catattagag tgggtaagag gatactctat      2040
     cccttttttc tgtcaacctg tgcaagataa gattccatat aataattctt tcaataaatc      2100
     agaattgcag attcttaatc aagaaataat taaactttca aagctaggtg ctatcagtct      2160
     ctgtcaacca acagctgatc aatttttgtc cacaatattt tccataccta agagtgatgg      2220
     ttcacacaga tttatattaa atcttaaaaa tctaaataag ttcattataa ccaaccattt      2280
     taaactagaa gatattagga ctctctgtaa attagttata caggaagatt ttatgtgcac      2340
     aatagatctt aaaaatgcat actatttaat agcaattaaa gaagataata ggaaatatct      2400
     acggttcaca tttaacaata agttgtatga attcaattgt ttaccttttg gtttatccac      2460
     tgcccccttt gtattcacca aactgttaaa accagtaata gagtatctca gaactcaagg      2520
     tataagactg gttatttacc tagatgacat aatttgcctg gggtcaacat atgaggaatg      2580
     tattcataat acgaacatta caagaaagtt gttagaaaat ttaggctttg tgattaacaa      2640
     agaaaagagt ttagatgtcc ctttacaatg ttgtgaatat ttaggatttt tggtcaattc      2700
     caaaaccatg acattaagcc ctactctaaa taaaagagaa aaaattttgt ctatgattaa      2760
     taaatattta aaattaaaat catgttcaat tagagatttt gccacattat taggaaattt      2820
     agtatcagtt tgtatggcca tatcatatgg ttttagacac actaaaactt tggaaagaga      2880
     aaaattttta gcccttgaag aatcaaaagg aaactatgat catagactaa acttaaatag      2940
     tgatataaaa acagaactgt tttggtggaa aaagaacatc attagtagga acaacaaaat      3000
     caaacaatac aattttattt tagaaatttt ttctgatgcc tcactaagtg gttggggtgc      3060
     acattgtgat gggcagagca ctgggggtag ttggtcagaa tgggaacggc aacaacatat      3120
     aaactattta gaattgttag ctgcatattt cgctttgcga agttttgcta gtacattaga      3180
     aaattgtgag atattactta ggattgataa tactacggca atagcgtaca taaatcgcat      3240
     ggggggtgta caatacccta aactaaatag gattgctcaa caaatctggc aatggtgtga      3300
     aaacaaaaat atttggattt ttgcttctta cattaaatcg aaagaaaata aagaagctga      3360
     ttttgaatca cgtaatttta atgtagatac agaatgggaa ctttcacata agattttcaa      3420
     ttctatagta aagaaatttg gccaaccaaa tatagatctt tttgcatctc gtttaaatca      3480
     caagtgtcca aagtatgtat cttggcatag ggacccctat gcctggaaca tagatgcctt      3540
     tacaattaaa tggaacaatt tgtttttcta tgcgtttccc ccctttagta tgctgcttaa      3600
     agttctccat aagataagaa cagataaagc aacaggaatt attgtctatc caatatggcc      3660
     atcacaacca tggtacccag ttttgaaagc cctactagtg tctgatatta tgacaatagg      3720
     accatcagac aatactctaa catctccttt cagaactcct catccacttc atcttaccct      3780
     gggggcgtgc atattatcag gcaagctttc aagaggagaa tgatgtcaga agaagcaacg      3840
     gacatcatga tagcttcatt atcacagaat tcactgaaac aatacaacag ttgtctgcga      3900
     caatggtggt cctatacaaa agaattcaaa atagatatgt atcaggcttc aattcctata      3960
     ataatttctt atctcacaag catgtttaat aaggggtcat cttatcaatc attaaactgt      4020
     cacagatcgg cgctctctct cataataggt aatcgtgtag gctccgacga tagaattaaa      4080
     cgtttgttta aggggttttt caaactacgc cctactaaag caaaatacaa tagtgtctgg      4140
     gatcccagca aagtactatt acatttaagg tcttggtacc ctcttgatag cttaaactta      4200
     gaaaatctca caaaaaagct agctatgttg atagcgttag cgacaggaca acgggttcaa      4260
     accttgttct gtataaatat caataatata aagattaata atgaaggagc tgtcatactg      4320
     attacagata ttctcaaaac ttccggtcca aatagaagat ccctcagact aatgttacca      4380
     ttcttaagta ataagcccga aatatgtcca gtcaagactc tcaaaatgta tttagataaa      4440
     actagaatat tcagacagga agataaatct ttaacaaaat tatttttaac ttttcgaaga      4500
     ccacacaaac atgcaaccac tcagactatt agtaggtggc ttaaacagac aatgcacgaa      4560
     agtggtattg atacatcaga gttcactgca cattctacaa gacatgcatc ttcctcacgg      4620
     gcacacagac agggtttaac ggtagactct atactgcagg cagttgggtg gtcttctaga      4680
     tcatccacat ttgctaatca ttataataga cctcttcaag ataaaaatga cattcaagat      4740
     gattttgcta gggcagtttt aaataattaa actgcactaa ttagtacctg taactagtat      4800
     taatcatatt atgtaagaac ttgtttagtt gattttaaat actgtgatta tatgagactg      4860
     attgaatagt ctaattaaga agaatttaag gattttggtt tgttacattt aatatggagt      4920
     gtcactccag atgtttacta ttaaataatt tgattttaat ataagtttga ttgttattac      4980
     ctaagttaat attataaatt ttaattactt aagtcagatt aatgtaccta gatggctaga      5040
     tctgatcata gtccaaacta aaggtagtta tagaatctcc aagttataag gatttaatct      5100
     tattaaataa gcataaagga tgttaattaa taaatgcctt gttttcacct taaaaaagtt      5160
     tatttatgcc tgacctctaa acatctgcta gtatatatta tataaggtat ataatatata      5220
     cctcggacta atttcgaata taataaatgg attaaacgaa cttacctagt gaagttctat      5280
     ccatattata tgaagaaatt agtccgaggt atgaaaatcc caccctccca agaataatct      5340
     tcgattattc ttcccatatg taggtaccta gtaccactgc tctaaactga atgacaaagc      5400
     atagcagtgt tgccaggtgc cgcttttatt tttcttctaa atctaaaaaa tcgcgtcgaa      5460
     gagcaacaga aggcggctgc tgctagtata tattatataa ggtatataat atatacctcg      5520
     gactaatttc ttcatataat atggatagaa cttcactagg taagttcgtt taatccattt      5580
     attat                                                                  5585
//
ID   DIRS-4_SpFr repbase;    DNA;    INV; 5333 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the fall armyworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-4_SpFr.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5333
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1645-1645 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 152-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           510..1931
FT                 /product="DIRS-4_SpFr_1p"
FT                 /translation="MNESNNNSECANASVEEPRHDCAQDRVSKAVLSNSRK
FT                 RTRSVSRSSSSSSSPSSSDSTDSASSSDRKKKRGRHHKRRGGKHSRKSRKD
FT                 NRQMQKLFREVSALRNQITLSSSVPCGSAEPASVVDNDALIDDNVSGILYN
FT                 DSIDAYAGEPTRVQLPFNFDIETKLKEPAVPKAPDNLLKALQDVQYFNKSE
FT                 WSEVRYSEVQKSYCHTPGFVDLEANEEIRAYDQLRHLAYADKAYAALTFCA
FT                 LKQRQALSSTLTELLSWAHAEQDLNFNSLQDKITEVFSNGDFQKVSSDLLQ
FT                 LICGHRAEILQMRRDGITNHVRDPLIKATLRKIPPSDRHLFENESFTAALE
FT                 KMGGVKKAFVPLTKPTSGSASQAGPNKAARHPPQGSALYHGPSQGTSHGCC
FT                 TFVPHPHYQYRQSSQDCYHDRPQRQNNQSDRRTAPTSNNRGSFRSRGGHQN
FT                 YKQQNQGKGNRKRPGVSSDYNSGNKNRKY"
FT   CDS           1935..4760
FT                 /product="DIRS-4_SpFr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="LDTIQGGSTGTILRPMGGNGSSKLSVAHNNRVPHTLS
FT                 SKTTSNAAKSEERTLHHKGVQIDVCTHQSDERSGGIRSSAAFPELPVNNVS
FT                 GAKERWIRSPNFQLKSFKRLCNNGTLQPNKCISCTRLSPARRLALQSRPIA
FT                 GLLPFTDISGTQKIFAPHLSRGTFRNDLPTLRPQYSTKSVCFPKQLGSSDI
FT                 ARAESAHNCIFRRLPGSSPGQGHSAISCSHTSEPSRISRVAGKPKEIRCIP
FT                 AKESCVPGNSLESLGQRKISSARQDQRSYPQGLCNAELGQGLSARITKPSG
FT                 PSKLCEFCCATGQTTSPLSAQPPKCISKXSSQEGDPLTRRCSRRASVVASQ
FT                 LSPGICNPSPTTNTFRDHRRFRSSLGSPGGRLRSVRFVDCSRAASTLQYQR
FT                 DVGDLKGVRNPRSSTVHVHCSVPVRQSNSCGLLAERRRHKIASSDGCNAES
FT                 VQPTSPSSDKPDSQLYTRHLQWTCGSPVQTQTSTRMASSTCLHGEDISQVW
FT                 HSGNRSICVQSGQRGSQLRVAGFDRHPSDIPQCLFPAVELSPCVGVSTTIY
FT                 DTQGAGPSQLGDRAVPVNRPPVESSFLAGRSQSPSSSISVVDHQSQGVSNR
FT                 HHDRPATPQGPRDGARGLEVWGWAESLTGWNEDQIRLLRSSWRTSTLKTYK
FT                 VAWDRWVSWSKKYNLDPFHPTGPMVARYLADLYLINKLSYNTILLHKSVVA
FT                 TLCNAEDAGQISSHTLVKHVLKSIALKKPVTHKPPVWNIDTLTSFLSSNTV
FT                 DENNPFAASRHTATLLLLCSGRRVHDLTLLLVDSDHCVDDGSNIILKPMFG
FT                 SKTDSDTHRQSGWRLLPNTTCKXLDPVFWVRKLIDLLKDRRDSVNCPNLFI
FT                 NIRGKAKAASRTVIAGWVKTVLTEAGIPVTPGSLRSAVSSKNWSDNFPLDE
FT                 ILSRGNWKSKDTFTRFYRREIVPASASNSITRMFNPAD"
FT   CDS           1576..3807
FT                 /product="DIRS-4_SpFr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="PNLQVALLLKQDRIKLLATPRRGRLFIMDPRRVPAMD
FT                 AAPLCLIHIINIASPRRTAIMIVLSDRIIRVTVARHLQVTIEVPFAHEVAT
FT                 KTTNSRIKAKETVNAPESXLTTTLGTKTVSTDSIQFRAGQLALFYDRWEEM
FT                 GAPNFLLRIITGYRIPFLLKPPLMLPNLRKGPYITKESKSMSALISQMKDQ
FT                 GVLEAVPRSPSFLSTMFLVPKSVGSDRPIFNLRALNDYVITEPFSLINVFR
FT                 VPDFLQPGDWLCKVDLSQAYFHLPIYPAHRRFLRLIYQGELLEMTCLPFGL
FT                 STAPKVFASLSNWVAQTLREQNLRIIVYLDDFLVAHQDKDTLQSHVHILLN
FT                 RLEYLGWQVNLKKSVVSPQKSLVYLGIHWNPWDNEKSLPQDKTKDLIHKVS
FT                 AMLNLGKACLQELQSLVGLLNFASFAVPQGRLHHRSLLSLLNASLKXPVRK
FT                 AIRLPDDVLEELRWWLHNCHQASAIHLPPPTHFVTTDASDLAWGAQVDGYA
FT                 VSGLWTAQEQHLHCNIKEMLAILKVFETHGPLLCMSTVLFQCDNRTVVAYL
FT                 RNEGGTRSPPLMDVTRRVFSLLVLHQINLTVNYIPGIYNGHADHLSRHKRV
FT                 PEWHLLPACTAKIFHKFGTPVIDLFASSRANVVANYVSLDLTDTQAIFHNA
FT                 FSRQWNYHLAWVFPPPYMIPKVLAHLNSATGLYLLIVPRWSRVFWRADLKA
FT                 RAVASPWSIINLKEYLIDTTTGLPPPKVQEMALEVWKCGGGRKV"
XX
SQ   Sequence 5333 BP; 1511 A; 1237 C; 1138 G; 1441 T; 6 other;
     tattaaattc ttgaccgtta tttgaagctt actatttgag ataggcccta cctgatttcc        60
     ggctacatat gtccttctcc ttcactctta tacgtctgtc tcgctcgcac tatccccacc       120
     aggcaggtcc gagctcggtt ggasggtcga ggacgttctc aaatcattgg cgtcttgttt       180
     tccggcgagt acggttgtct tcaccgtaaa aagaagtatc acctacgcgt aagttaataa       240
     aaatttttta acggtgttac cgttcgtgtt taaattcgaa tttatataac gtttatatta       300
     tactttgttc aaattattac gcaggtatgt aacgtatttt agcgttattt ttccttgctt       360
     ctctttattt tagaaacatt tacctattgt cctttctcct agtctcagta taaagtgtca       420
     taattgtact gtgtcttagt tgtgaatctt ttgtgtttta cagataccta accttaaaaa       480
     aaaaaaaaaa aaagtgtttt acttttagga tgaacgaatc aaataacaat agtgaatgtg       540
     ccaacgcaag tgttgaggag ccacgacatg actgtgcaca ggatcgtgta tccaaagcgg       600
     ttctgtccaa ttcacggaaa cgtacacggt cagtgagtag gagttcatca tctagtagca       660
     gcccttcttc gtcagattcc acggattccg cgagctcctc cgaccgaaag aagaaacgtg       720
     gccgtcacca caaaagaagg gggggcaaac acagtcgcaa atcacggaaa gacaatcggc       780
     agatgcaaaa gttattccga gaggtgagtg cgttacgaaa tcaaattact ttatcatcat       840
     cagtgccatg tggtagtgcg gagcccgctt cagttgtaga caatgacgcg ttgattgatg       900
     acaatgtgag cggaatctta tacaatgata gtattgacgc gtacgcaggt gagcctactc       960
     gggttcaact gccgttcaat ttcgatattg aaacaaaact gaaagaacct gcggttccca      1020
     aggcacccga taatttattg aaagcccttc aggatgtaca atattttaat aaaagtgaat      1080
     ggagtgaggt caggtattct gaagtacaaa aatcatattg ccatacgcct ggttttgttg      1140
     acctggaggc taacgaggaa attcgtgcat atgatcagtt gcgccatttg gcctacgctg      1200
     acaaagccta cgccgctctc actttttgtg cgctgaaaca gaggcaggcc ttatcatcta      1260
     ccttgacaga actactatcc tgggctcatg cagaacagga tttaaatttt aatagcttgc      1320
     aggataagat cacggaggtt ttctctaatg gtgatttcca aaaagtgtct tcagatttgt      1380
     tgcagcttat ctgtggacac agggctgaaa ttttacaaat gcgccgagat ggaataacta      1440
     atcacgtccg tgatccttta ataaaggcaa cgttacgcaa gatcccacca tctgatcgcc      1500
     atttatttga gaatgagtcg tttaccgctg cccttgaaaa aatgggtgga gttaagaagg      1560
     cattcgttcc tttaaccaaa cctacaagtg gctctgcttc tcaagcagga ccgaataaag      1620
     ctgctcgcca ccccccgcag gggtcggctc tttatcatgg accctcgcag ggtaccagcc      1680
     atggatgctg cacctttgtg cctcatccac attatcaata tcgccagtcc tcgcaggact      1740
     gctatcatga tcgtcctcag cgacagaata atcagagtga ccgtcgcacg gcacctacaa      1800
     gtaacaatag aggttccttt cgctcacgag gtggccacca aaactacaaa cagcagaatc      1860
     aaggcaaagg aaaccgtaaa cgccccggag tctcstctga ctacaactct gggaacaaaa      1920
     accgtaagta ctgactcgat acaattcagg gcgggtcaac tggcactatt ttacgaccga      1980
     tgggaggaaa tgggagctcc aaactttctg ttgcgcataa taacagggta ccgcataccc      2040
     tttcttctaa aaccacctct aatgctgcca aatctgagga aaggacctta catcacaaag      2100
     gagtccaaat cgatgtctgc actcatcagt cagatgaaag atcagggggt attagaagca      2160
     gtgccgcgtt ccccgagctt cctgtcaaca atgtttctgg tgccaaagag cgttggatcc      2220
     gatcgcccaa ttttcaactt aagagcttta aacgactatg taataacgga acccttcagc      2280
     ctaataaatg tatttcgtgt accagacttt ctccagccag gcgactggct ttgcaaagta      2340
     gacctatcgc aggcctactt ccatttaccg atatatccgg cacacagaag atttttgcgc      2400
     ctcatttatc aaggggaact tttagaaatg acctgcctac ccttcggcct cagtacagca      2460
     ccaaaagtgt ttgcttccct aagcaactgg gtagctcaga cattgcgaga gcagaatctg      2520
     cgcataattg tatatttaga cgacttcctg gtagctcacc aggacaagga cactctgcaa      2580
     tctcatgttc acatacttct gaaccgtcta gaatatctag ggtggcaggt aaacctaaag      2640
     aaatccgttg tatccccgca aaagagtctt gtgtacctgg gaattcactg gaatccctgg      2700
     gacaacgaaa aatctcttcc gcaagacaag accaaagatc ttatccacaa ggtctctgca      2760
     atgctgaact tgggcaaggc ctgtctgcaa gaattacaaa gcctagtggg ccttctaaac      2820
     tttgcgagtt ttgctgtgcc acagggcaga ctacatcacc gctctctgct cagcctccta      2880
     aatgcatctc taaagawtcc agtcaggaag gcgatccgct taccagacga tgttctagaa      2940
     gagcttcggt ggtggcttca caactgtcac caggcatctg caatccatct cccaccacca      3000
     acacatttcg tgaccacaga cgcttccgat ctagcctggg gagcccaggt ggacggttac      3060
     gcagtgtcag gtttgtggac tgctcaagag cagcatctac attgcaatat caaagagatg      3120
     ttggcgatct taaaggtgtt cgaaacccac ggtcctctac tgtgcatgtc cactgttctg      3180
     ttccagtgcg acaatcgaac agttgtggcc tacttgcgga acgaaggcgg cacaagatcg      3240
     cctcctctga tggatgtaac gcggagagtg ttcagcctac tagtccttca tcagataaac      3300
     ctgacagtca attatatacc cggcatttac aatggacatg cggatcacct gtccagacac      3360
     aaacgagtac cagaatggca tcttctacct gcttgcacgg cgaagatatt tcacaagttt      3420
     ggcactccgg taatagatct atttgcgtcc agtcgggcca acgtggtagc caactacgtg      3480
     tcgctggatt tgacagacac ccaagcgata ttccacaatg ccttttcccg gcagtggaac      3540
     tatcaccttg cgtgggtgtt tccaccacca tatatgatac ccaaggtgct ggcccatctc      3600
     aactcggcga ccgggctgta cctgttaatc gtcccccggt ggagtcgagt tttctggcgg      3660
     gccgatctca aagcccgagc agtagcatct ccgtggtcga tcatcaatct caaggagtat      3720
     ctaatagaca ccacgaccgg cctgccaccc cccaaggtcc aagagatggc gctcgaggtc      3780
     tggaagtgtg ggggtgggcg gaaagtctaa cgggttggaa tgaggatcaa atacgattac      3840
     tcagatcttc gtggcgtact tcgaccctaa aaacctacaa ggtcgcatgg gatcgatggg      3900
     tatcttggtc aaaaaagtat aatttggacc cctttcaccc tacagggccc atggttgctc      3960
     gatatctagc agacctatat cttatcaaca agttgtctta taacactatt ttgcttcaca      4020
     aatcagtggt agctactctg tgcaatgccg aagatgctgg acaaattagt tcacatacat      4080
     tggtgaaaca cgtcttaaag tcaatagctt taaagaaacc ggtcacccat aagcctccag      4140
     tctggaatat agataccctg acctccttct taagctcaaa cactgtagat gaaaataacc      4200
     ctttcgctgc ttctcgtcat acagcaacac tcctcctcct gtgctcaggc agacgagttc      4260
     atgacctgac attgctgcta gtggactcag atcattgtgt cgatgacggc agtaacatta      4320
     ttttaaaacc aatgtttggc tctaaaaccg atagtgacac tcataggcaa tccggttgga      4380
     ggttactacc taatactact tgtaaaamtc tggatccagt attttgggtc agaaaattaa      4440
     ttgatctcct taaagacaga cgagattcag ttaactgtcc caacttattt atcaatatca      4500
     gaggaaaagc aaaggcggcc tctcgcactg tgattgcggg atgggttaaa accgtgctaa      4560
     cagaggctgg catacctgtt acaccgggaa gtttacgttc agctgtatcc tcaaaaaatt      4620
     ggtctgataa ctttcctctg gatgagattt tgtccagagg aaattggaag tctaaagata      4680
     cctttacacg tttctacaga cgagagatag tgccagcctc tgctagcaat agcattacca      4740
     gaatgtttaa tccagctgat taaagtctat tattattatc aataccaatt attttcattg      4800
     attattgatt gattatttgt aacagaggaa tgttgttagt aaagatttgt tagtgattgt      4860
     ttgtaaagaa aataaagtat gatcccataa tataaagtgt tatttatttc ttacacatac      4920
     taaagctgat ttttatgtaa tatcacacta tctctcaaat ggcttttmtt tcacattggc      4980
     gtccccacca ccaggcgata acaaacacgt ctcaaatagt aagcttcaaa taacggtcaa      5040
     gaatttaata acagcgtttt acctgaaata aaacgcttat taaatactta ccttatttga      5100
     agcttacaaa taatttctgc ctggtatttt cgactcaatg atttgagaac gtcctcgacc      5160
     stccaaccga gctcggacct gcctggtggg gatagtgcga gcgagacaga cgtataagag      5220
     tgaaggagaa ggacatatgt agccggaaat caggtagggc ctatctcaaa tagtaagctt      5280
     caaataaggt aagtatttaa taagcgtttt atttcaggta aaacgctgtt att             5333
//
ID   DIRS-5_FoCa repbase;    DNA;    INV; 4814 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4814
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2437-2437 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The sequences 1-169 and 4602-2770
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           933..1499
FT                 /product="DIRS-5_FoCa_1p"
FT                 /translation="MRAPKVNCEIWTQLPKKAQVIDASQQFVQQFVSRGLV
FT                 AQSHLAEILAKNSDKIPNDLLKSLLSCSMEAATEFGMAFREISLRRRQQIK
FT                 PFLSIESAGICGSSVPVTENLFGNNLEKDLIAVRTSAKIVKNLTPIYRGGA
FT                 RGTYARGSFNRGSLSNAGTSHNLNFRAPLLSRGGRRPFNRGRYNNYRPQN"
FT   CDS           1415..3013
FT                 /product="DIRS-5_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="FKLPGASPLEGRQTTIQPRKIQQLPPAELNVSKLSGR
FT                 LRLYYDKWANLTDDPVILEIVRGYKLPFKNLPEPQINCKVQEFNPEEKLFI
FT                 IDELDRLMKMGAISLSEEESDQFVSPIFTVPKPDGKRRFILNLKKLNSYLH
FT                 CPHFKMEDYRSVLNIMRLNMFMATIDLQDAYFHVPVHDSCKKYLKFRFNGI
FT                 LYHFNCIPFGCCTCPLLFTKLLKPVFEKLRTLGYQSVRYLDDFLLFGQTFE
FT                 LCSENVQATQNLLKSLGFTVNYQKSELLPSKVIKYLGFIFNSLEMTIQLTP
FT                 NKRSLIFEFAQKCLLSKSLIIREAAKLQGYLISACPAVQYGLLYTRKLASD
FT                 IQFSLESNNDNYQNRMTLSQEAVSDIHWWQSVIHKAEVSIKEDSFKKVIHT
FT                 DASPFGWGCFCDNDVSHGTWSKSEELLHINALELLAIERALTIFANDEGNC
FT                 NILLKVDSQVAISYINCYGGCRSELLHAIAKRIWLFCEKKDIFIKATYLES
FT                 KKNVEADFASRIEVVNSDWMLKSVILSQFVIHLASQL"
FT   CDS           3321..4319
FT                 /product="DIRS-5_FoCa_4p"
FT                 /note="tyrosine recombinase."
FT                 /translation="APPSSLQPQISSSNIARRSFINSGLSSDVCELLLSSC
FT                 ASSSWKQYESYLKRWENFCNNYGSDIFHSNLQSILKFLTALYKDGVGYSGI
FT                 NTARSALSLIIAPIDGVDVGKHPLVIRLLKAVSKLRPPKPRYDNVWDVNLV
FT                 LDMFTSWPLNSELPIFRLTIKLVALLALVTGQRVQTLSLININNIIRSSNV
FT                 QILIPEIIKTSGVAKKQPCLLLVPYKVNDKLCVVKCLDEYLNRTASYRNSD
FT                 ELLISVVLPYKPVTSQTISRWLKECLSLAGIDVSIFKAHSFRHASTSKAVA
FT                 KGVSLDVVFSRAGWSDKSKTFAKFYNKPLDLRGEFSNAVLS"
FT   CDS           2950..3381
FT                 /product="DIRS-5_FoCa_3p"
FT                 /note="DNA N-6-adenine-methyltransferase (Dam)."
FT                 /translation="FGLDAKKCHFIAICNSFGEPALDLFASKNTNQCSRFY
FT                 SYSPDRNSEGVDAFTFKWSESLLYAFPPFCLISRVLKKICNDKCRCIVVVP
FT                 LWKSQVWYPEFERLRQSNSLIFGPEKDLLTSPFSNRHHPLHSSLKLVAAIL
FT                 QDVHS"
XX
SQ   Sequence 4814 BP; 1511 A; 833 C; 937 G; 1533 T; 0 other;
     taattttacg tcacaccatc gccctccgag gtcactgagg agggatgatg gttgacaagt        60
     agtatgtaag ttcaccggca gggaaaggcg tattttgaag caaaaagcat agaacaaagt       120
     aaaaaactcc ttcttccatg cacacgcgcg ccaccaccaa ccctcagtgt tggttcatac       180
     gcggcagagg aaggcagctc acgttttcgc tctctccatc caaaatggct tccagtaaag       240
     aagaaaattc ggaaattata ggaaattcac aaaaacggta agatatttgt gtttattttt       300
     cctccgccgc gtcgcgcaaa cgctaggttt ttcgattagt gaaaatttta ttaatgcgct       360
     gcattaattt atattgtttg attaattaaa tagaaaaatt ggagaggaag attctccaga       420
     gaaaaagaaa ccaaaaaatg aaaaaattgg cctaagatca ctgtcgcaga cagtgcatca       480
     aaattccgaa aatatttcta agctcgttga gttttttgaa aacatgattg gccagtcgca       540
     ggcgcagcct cgacaaaata atacctgcca cgtagtggat gttggtaatg aggatgatcc       600
     aataacagat ctttttacct caattgttga taaatcgcca aatggtgagt acaaaatgaa       660
     atgaatttca ttatttaaaa attgggaata ttctaaacat tgaaaaaatt atgatttaaa       720
     tcataataga tgaatctgct gatcaaaata ttgagattga aaatccaatt gttgaagaaa       780
     tattgaattc aaatcagtcg gaggatgaat atggccctcc tttaggattg aaagtagcag       840
     cagcattcaa acgattaatt gctcagccag cttcaaaaga acacattgat caaaacaaga       900
     tcaaattaaa gatcccagaa aacattaaag aaatgagggc acccaaagtc aattgtgaaa       960
     tttggactca acttcctaaa aaagctcaag ttattgatgc atcacaacaa tttgttcaac      1020
     aatttgtttc aagaggttta gtagcccagt cacatcttgc tgaaatttta gcaaaaaatt      1080
     cagataagat tcccaatgat ttattgaaaa gtttactttc ttgttcaatg gaagccgcaa      1140
     cagaatttgg tatggctttt agagaaatta gcctcaggcg acgacaacaa attaaaccct      1200
     ttttgtcaat cgaaagtgct ggaatttgtg gatcttcagt tccggtcacc gaaaacttat      1260
     tcggaaataa tttagaaaaa gatttgattg ctgtccgaac atcggccaaa attgtgaaga      1320
     atttgacccc catctatcgt ggaggtgctc gtggaactta tgcaagaggt tcatttaatc      1380
     gagggtcgtt atctaatgct ggtactagcc ataatttaaa cttccgggcg cctctcctct      1440
     cgaggggagg cagacgacca ttcaaccgag gaagatacaa caattaccgc ccgcagaatt      1500
     aaatgtgagt aaattatcag gtagattaag attatattat gataaatggg cgaatttgac      1560
     tgacgaccct gttattcttg aaattgttcg gggttacaaa ctacctttta agaatttacc      1620
     agagccacaa attaattgta aggttcaaga atttaatccg gaagaaaagc tatttattat      1680
     cgatgaattg gaccgcctaa tgaaaatggg ggcaatatct ctatctgaag aggaaagtga      1740
     tcaatttgta tctccaatct ttactgtccc taaacctgat ggaaaaagac gattcatctt      1800
     gaatcttaag aaactgaata gctatttaca ctgtccacat tttaaaatgg aagattaccg      1860
     aagcgtattg aatattatga gattaaacat gtttatggcc acaatagatt tacaggatgc      1920
     gtatttccac gttcctgttc atgacagttg taaaaaatat ttaaaattcc gtttcaatgg      1980
     tatactttat cactttaatt gtattccatt tggttgttgt acttgcccat tattattcac      2040
     aaagctcttg aaaccagttt tcgagaaact tagaacatta ggctatcaat ccgtgagata      2100
     tttggacgat tttttgttat ttggtcaaac atttgaatta tgcagcgaga atgttcaggc      2160
     cacccaaaat ttactcaaaa gtttggggtt taccgtaaat tatcaaaaat cggaattact      2220
     tccaagtaaa gtaattaaat atttaggatt tatttttaat tccttagaaa tgaccattca      2280
     attaactccg aacaagcgtt ctttaatttt tgaatttgca caaaaatgtt tgttatctaa      2340
     atctctaatt ataagagagg cagctaaatt gcaaggatat ttaatttcag cgtgtcctgc      2400
     agtacaatat ggattattgt atactcggaa attagcttcc gatattcaat tctctttaga      2460
     atcaaataat gataattatc aaaatcgtat gactttgtct caagaagcag tttcggatat      2520
     tcactggtgg caatcagtaa tacataaagc tgaggtttcc ataaaagagg acagttttaa      2580
     aaaagtgatt cacactgatg cgtcaccttt tgggtggggc tgtttttgtg acaatgacgt      2640
     ttctcacggc acttggtcaa aatctgaaga gttattacat attaatgcgt tggaactgtt      2700
     agcaattgag cgagcactga ctatatttgc aaacgatgaa ggaaattgta atattttgtt      2760
     aaaagttgac agtcaagttg caatctcgta tataaactgt tatggtggtt gccgctcgga      2820
     attgttgcat gcaattgcta aaagaatctg gctattttgc gagaagaaag atatttttat      2880
     taaagctaca tatttagaaa gtaagaaaaa tgtagaagct gattttgctt ctcgtattga      2940
     agtagttaat tcggattgga tgctaaaaag tgtcatttta tcgcaatttg taattcattt      3000
     ggcgagccag ctttagattt atttgcgtca aagaacacaa atcagtgttc gagattttat      3060
     tcgtattctc ctgatcggaa ctcggaaggg gttgatgcat ttacgtttaa atggtcagaa      3120
     tccttgttat atgcgtttcc cccattttgt ctaatttcac gtgtcctgaa aaagatttgc      3180
     aatgataaat gtagatgcat tgtggtggtg ccactttgga aaagtcaggt ttggtatcca      3240
     gaatttgaga ggctgcgtca gtcaaattcg cttatatttg gacctgaaaa agatttgcta      3300
     acttcacctt tttcgaatag gcaccaccct cttcactcca gcctcaaatt agtagcagca      3360
     atattgcaag acgttcattc ataaacagtg gccttagttc agatgtttgc gaacttttac      3420
     tttcatcctg tgcgtcatcc agttggaaac aatacgaatc gtacttgaaa cgatgggaaa      3480
     atttttgtaa taattatggt tcagacatat ttcattctaa tttacaatcg attctgaaat      3540
     ttttgaccgc tttgtataag gatggcgtag gctatagcgg tattaacaca gcaagatcag      3600
     ctctgtcttt aattatagcc cccattgacg gtgttgacgt tggtaaacac cctcttgtaa      3660
     ttcgattact aaaagctgtt agcaaattac ggccaccgaa acctagatat gataatgtgt      3720
     gggatgtaaa tttagttttg gatatgttca cttcatggcc gttaaattca gagctgccta      3780
     tatttaggtt aaccataaaa ttggtagcgt tactcgcttt ggtcacggga caaagggtac      3840
     aaaccctgtc gttaattaat ataaataata tcataaggtc aagtaatgtt cagattctta      3900
     ttcctgaaat tattaaaact tctggggttg cgaagaagca accgtgcttg ttattggtcc      3960
     cttataaagt taatgataag ttatgtgttg ttaaatgctt agatgaatac ttaaatcgta      4020
     ctgctagtta tcgtaattct gatgaattat taattagtgt agttttacca tataagcctg      4080
     ttacaagcca gactattagt agatggctaa aagaatgttt gtcattagct ggtattgatg      4140
     tttctatttt taaggctcac agtttccgtc acgctagcac aagtaaggcg gtagcaaagg      4200
     gggtcagctt agatgtcgtt ttttctagag ctggttggtc tgataaatct aaaacatttg      4260
     caaagttcta caataagcca ttagatttac gaggtgaatt ttcgaatgct gtattatcat      4320
     aattaagagt tacaaataaa ttcgtatatg tttttgtact tatctatgta tatatatttt      4380
     tcactcgtca aagtttcttt gaacggctac ttgtcaacca tcatccctcc tcagtgacct      4440
     cggagggcga tggtgtgacg taaaattgac gattaatcga gacttacctg taaggtgaga      4500
     aattgatcgt aattttacga tcaccagagc ccgaacgagg tcactcccga ccctccctcc      4560
     cggtactttg actcgtggcg ttgggggtat ttctttgaac tcactgaggg ttggtggtgg      4620
     cgcgcgtgtg catggaagaa ggagtttttt actttgttct atgctttttg cttcaaaata      4680
     cgcctttccc tgccggtgaa cttacatact acttgtcaac catcatccct cctcagtgac      4740
     ctcgttcggg ctctggtgat cgtaaaatta cgatcaattt ctcaccttac aggtaagtct      4800
     cgattaatcg tcaa                                                        4814
//
ID   DIRS-5_HeAr repbase;    DNA;    INV; 5131 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-5_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5131
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5285-5285 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 125-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           681..1580
FT                 /product="DIRS-5_HeAr_1p"
FT                 /translation="LPNSRVQTVSLYHEFVTIVSGAPYEVNFTLNQTSHSN
FT                 VSATNSISVPAPTATFAPAPDPTSVVIPVATSTPNIPPPLENAPTEGIQEL
FT                 DLQPDILCLLGEEPVREEKFGVNVHKDIASRWSDILVNGIKDQTKNEILKA
FT                 YNVPDNLRVAQAPTLNPEIRAAVNESALKRDDILIDKQKILSVVITSLANT
FT                 ITSVLTTTSIDETFKCQMLKCLSDAGRLLCHAHYDETQTRRNFLLSCLNKE
FT                 IKDSVKDLKRDHMLFGTDLQDNLKSMKAIIKTGSELKSSAAKPKLPPKICN
FT                 RKDQLQGL"
FT   CDS           1513..3624
FT                 /product="DIRS-5_HeAr_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="NLRLLSRSYHPKFATERINSKGFKLEGPATAAVTASP
FT                 RASETEPDGWWAQAAAINAPCDGPSCSTSAEPALAPLAEVNGTNVQAGRLK
FT                 YFYYNWLHITNDPVVLSWVNGLRIPVSNDIFQSSIYPQNTPKSNADELAMT
FT                 KEIENLLSIGAISLCEPCDGQFLSNIFLVKKSNGTNRFILNLKSLNKFITA
FT                 PHFKLEDYRTAMRLMSKHAYMCSIDLKDAYFSISVHCESRKYLRFYWLGKL
FT                 YEFQVLPFGLNIAPYVFTKIMRPVMEFLRNQGLLSVIYLDDLLLFGNTSSD
FT                 CKRNYEITQNLLQSLGFTINIKKSVSTPSQTAIFLGFLFDSQNCTISIPLE
FT                 KKQKIKDELMHFSSLKRCKLRNFAHMIGLLISICPASQYGWLYTKKFERIK
FT                 YLSLKQNDDYNQYINLPMPLREEFDWWLRNIDHCASPIRSGDYKLEIYSDA
FT                 SRTGWGVNCSGRTASGQWSSEELTKHINYLELKAAFFGLQIFAKNFSNCEI
FT                 LLRIDNSTAISYINRMGGIRYPHLNSISRKIWQWCEERGLYVFASYISSRD
FT                 NYIADAESRRIHADVEWELADDAYRFICKKFNQPEIDLFASRLNKKCSKFV
FT                 SWHKDPEAYKVDAFTLTWSNYFFYAFPPFCLIIKVLQKIIFDKAEGIVVVP
FT                 LWPTQPWYPLFRKLLITEPIELKSNTKLLSSPYSREHKLQESLTLVAGVLS
FT                 GRRS"
FT   CDS           3534..4586
FT                 /product="DIRS-5_HeAr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="YKIVVIPLQSRTQASRESYPGCRSIIRQAFLRQGSPS
FT                 AAADVMLASLAESTLRQYNTCFRRWFAFCQDRNLNLFDVSVTHVLDFFVIL
FT                 FQEGQKYGSINSNKAALSLVLNAVIMNDPQVTRFMKGVYKLRTPQPRYTFT
FT                 WDPAIVLDYLSAWYPNSDLSFERLSKKLTTLLALITAHRVQTLSLIKLSNI
FT                 KKYNEKFVINITDQIKTSAVNRTPPTLILPYFDERPSICPARTLEHYLSVS
FT                 ATKRKSNCDSLLISFKKPFNNVTSQSLSRWIKVTLRESGIDTSIFCAHSTR
FT                 HAATSAANRFGVSLDIIKRTAGWTGRSETFAKFYNREVIADTSDVFARSIC
FT                 RMASVNDV"
XX
SQ   Sequence 5131 BP; 1545 A; 979 C; 1014 G; 1593 T; 0 other;
     attaaacttc agtgattcgc ccttcgagat tacacttatt tacttgtagt agcacggata        60
     tgtgctgcca tcttacacta ctttagagca accatattta aaaaaataat tatgcgcgct       120
     ctaatgtggg tatctcatac acgttttgtg tggctgccat cgcgcacgta tttttttatc       180
     gttattagtt atttggatat tttagtgggt tttttgtgtt taaatcatgg gaaaacgaaa       240
     acaccacgac gaagaagagt atttggctcg aaaaatcaga aaatacgaga aaaagatgtc       300
     tcgagttcgc cgtaaacaaa ggagttaccg cagtgcatcc atttcaagtt tagaacgtga       360
     tcgatattcg gataacgaat accccgggtc gccgcaggag actccacaaa acggaggttt       420
     gtacatacat ggatatttaa atttcgaacg acactcttcg acagcgtgac cttgacctac       480
     ttttcaaaca aatcgttttt ttttttgttt accgtctagt gctatgagtt tagtctgcaa       540
     ggctaatacc aaccaatagt atacttcagt ttaacctgta aggttaatcg ctgtatatgt       600
     ggtagcacag aaactctaga acatagtccg ggaggctatg tcgtgagtta tgtttacagt       660
     tatgtggatg acacggataa ctacctaatt ctagagtaca aaccgtgagt ttgtatcatg       720
     aatttgttac tattgtttca ggagcccctt atgaagtaaa ttttacatta aatcaaactt       780
     cacattcaaa cgtctcggct accaatagta tatccgtgcc cgcaccgacg gcaacttttg       840
     ctcccgcacc tgatcctact tctgttgtta tacccgtggc cacgtccacg ccaaatatac       900
     cgccgccgct agaaaatgcg cctacggaag gtatacagga attagaccta caacctgata       960
     ttttgtgttt actcggagaa gagcctgtga gggaagagaa gttcggtgtg aatgttcaca      1020
     aagacattgc tagccgctgg tctgatatat tagttaatgg tattaaggat caaactaaaa      1080
     atgagatatt gaaggcctat aatgtacctg ataatcttag agttgctcag gctccgacac      1140
     ttaatcctga aataagagcg gcggtgaatg aaagtgcctt gaagagagac gatattctga      1200
     ttgataaaca gaagattttg tctgttgtca taacaagttt ggcaaataca atcacgtctg      1260
     ttttgacaac tacttccatc gacgagacgt tcaagtgtca gatgttaaaa tgccttagtg      1320
     atgccggtag actcttgtgt catgcacatt atgatgagac acaaactaga aggaattttt      1380
     tgctgtcgtg ccttaacaaa gagatcaaag atagtgttaa ggaccttaaa cgtgatcaca      1440
     tgttatttgg tactgatctt caagataatt taaaatctat gaaagctatt ataaaaacag      1500
     gttccgagtt aaaatcttcg gctgctaagc cgaagttacc acccaaaatt tgcaaccgaa      1560
     aggatcaact ccaagggctt taaactggag gggcccgcca ccgccgcagt cacagcctcg      1620
     ccgcgcgcca gcgagaccga acccgacggc tggtgggcgc aagcagcagc catcaacgcg      1680
     ccgtgcgacg gaccgtcgtg ctccacgtca gcagagccgg ccctcgcgcc gctagccgag      1740
     gtgaacggca ctaatgtaca ggctggtaga ttgaaatatt tctattataa ttggttacac      1800
     atcacgaatg atccagtagt cttatcctgg gttaatggtt tgcgaattcc tgtttcaaat      1860
     gatatctttc agtctagcat ttatccacaa aacactccca aatccaatgc agatgagtta      1920
     gccatgacta aagaaattga gaatctttta agtattggcg ccattagtct atgtgaacca      1980
     tgtgatggtc aatttttatc aaatatcttt cttgtcaaga agagcaatgg aaccaataga      2040
     tttattttaa atttaaaatc attaaataag tttattaccg cgccacattt taaacttgaa      2100
     gattacagaa ctgcaatgag gctcatgtct aagcatgctt acatgtgttc aattgacctt      2160
     aaagatgcat atttttcaat tagtgttcat tgcgaatcta gaaagtattt gcgtttttat      2220
     tggttaggaa agctatatga atttcaagtt ttaccatttg gtcttaatat agcaccctat      2280
     gtttttacaa aaatcatgcg ccccgtaatg gaatttctgc gtaatcaggg gctattgtct      2340
     gtcatttatt tggatgattt gttgttattc ggaaatacta gtagtgactg taaacgaaat      2400
     tatgaaatta ctcaaaactt gttgcaatca ctaggtttta caataaatat aaaaaagagt      2460
     gtaagtacac ccagtcaaac tgctatcttt ctaggttttc tgtttgattc acaaaattgt      2520
     acaataagca ttcctctaga aaagaaacaa aagatcaagg atgagctcat gcatttttct      2580
     agtttaaaac ggtgcaagtt acgtaacttc gctcatatga taggattgct aatatcgatt      2640
     tgtccagcat cgcagtatgg ctggctttat acaaagaagt ttgaaagaat taagtatctg      2700
     agtttgaaac aaaatgatga ttacaatcaa tacattaatt tacctatgcc cttacgtgaa      2760
     gaatttgact ggtggttacg taacattgat cattgcgcta gccctatccg atctggtgac      2820
     tacaagttgg aaatatactc agacgcgtct cgaactggtt ggggtgtgaa ttgctctggt      2880
     agaaccgcca gcgggcaatg gtctagcgaa gagttgacaa aacatattaa ttatttagag      2940
     ctgaaagcag cattttttgg attacaaatt tttgccaaaa attttagcaa ttgtgagatt      3000
     cttttacgga ttgacaactc tactgctatt tcttatatca ataggatggg tggtatacga      3060
     tatccccatc tcaattcaat cagtcgcaag atttggcagt ggtgtgaaga gcgaggctta      3120
     tatgtttttg cttcttatat tagttctcgt gacaactata tcgcggacgc ggaatctcgt      3180
     cgcatacatg ctgacgtcga atgggaactc gccgacgacg cttatcgttt tatatgcaaa      3240
     aaatttaacc agcctgagat tgatttgttt gcaagtcgat tgaataagaa atgttcgaaa      3300
     tttgtttctt ggcacaaaga tcccgaagca tataaggtgg atgcatttac tttgacctgg      3360
     tctaattatt ttttctatgc atttccccca ttttgcttaa taataaaagt tttacaaaaa      3420
     atcatttttg ataaagctga aggtattgtt gtggttcctc tctggccaac gcagccttgg      3480
     tacccacttt ttaggaagct gttgattacc gagcctattg aattaaaatc taatacaaaa      3540
     ttgttgtcat ccccttacag tcgcgaacac aagcttcaag agagtcttac cctggttgcc      3600
     ggagtattat caggcaggcg ttcctgaggc agggttctcc ttctgctgct gccgacgtca      3660
     tgttagcgtc attagcagag agtacactta gacagtataa tacttgtttt agacgttggt      3720
     tcgccttctg tcaagatagg aatttgaatt tatttgatgt atctgttact catgtgttag      3780
     atttttttgt tattcttttt caagagggtc aaaaatatgg ttcaattaat agtaataaag      3840
     cagcactgtc acttgtgtta aatgcagtga ttatgaatga ccctcaagta acgaggttta      3900
     tgaagggagt atacaaattg cgaaccccac aaccaagata tacttttaca tgggatccgg      3960
     ctattgtctt agattactta agtgcttggt accctaattc agacctttcg tttgagagac      4020
     tgtccaagaa attgacaaca cttttggcct taataactgc acatcgggta cagacattgt      4080
     cgttaattaa attgtctaac attaaaaaat acaatgaaaa gttcgtaatt aacatcacag      4140
     atcaaatcaa aacctcggcg gtgaatcgta cgccgccaac attgattctt ccttatttcg      4200
     atgaaagacc ttccatatgt cctgctagga ctttagaaca ttatttaagt gtatcagcaa      4260
     caaagagaaa atctaactgt gattccttat tgattagttt taagaaaccg tttaataatg      4320
     taacttcaca atctttaagt cgttggatca aggtcaccct tcgtgaaagt ggcatagaca      4380
     cgtctatttt ttgtgcacat agcacaagac atgcagcaac gtctgccgcc aataggttcg      4440
     gagtgagctt agatataata aaaagaaccg caggttggac cggtagatct gaaaccttcg      4500
     caaagttcta caatagagaa gtgatcgcag atacctctga tgtctttgct cgttctattt      4560
     gtaggatggc ctcggtcaac gacgtataat gaagatgact ttgttttcct ttacatgctg      4620
     ataaataagt ttttaaatta caataataca ttatctgatt atgtattttg tagtttctat      4680
     cacttttcta tccaaacgtt tcctctcttt tacctatttc gtgagacttt aaacatctac      4740
     aagtaaataa gtgtaatctc gaagggcgaa tcactgaagt ttaatagaaa atcaaacgaa      4800
     cttacctgta agtgacgttc gatgactatt aaacgatgtg attcgcccga agagattaca      4860
     ctccctccct gtccctgatc aaaatacctt tagatccttc ccaaattttc acgaaatagt      4920
     ggctaacgat ggccaaaggg gcaaacgtgt atgagatacc cacattagag cgcgcataat      4980
     tattttttta aatatggttg ctctaaagta gtgtaagatg gcagcacata tccgtgctac      5040
     tacaagtaaa taagtgtaat ctcttcgggc gaatcacatc gtttaatagt catcgaacgt      5100
     cacttacagg taagttcgtt tgattttcta t                                     5131
//
ID   DIRS-5_MSe  repbase;    DNA;    INV; 4791 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-5_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4791
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 551-551 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 152-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           292..1455
FT                 /product="DIRS-5_MSe_1p"
FT                 /translation="MEEENLKTVVADDSNPRKRGHSSSSSSDSDNDSSSDK
FT                 DIDHQETNETVSYAHFQFLAQQVAFLTNLIEKQXEKSHENLISAQVVSNDL
FT                 NLRRPVNNEGSNCNRLNILSEVSTTVKDPIYPKSEDRYVDKLSQLQRFKCN
FT                 DWYSIRFSDAQKKYLTTPGFIELGVNDELKRFEASMIKEDSRSHLLERTCA
FT                 GLTKALLSQKDELHRTLQTLVDWANESKESLSPNSLFEKIEELFSKDSTYS
FT                 KVSDDLLQIVCGRRADFINCRREVLLRQIPEGFHRDVLSKIPPSPEYLFND
FT                 EALQSYIQKIGGVDKLSASSKVLNHSQSKGYNFYHNPKPSTSKLPEDRFFR
FT                 RDTNTKNDKQQSHRRSNQKGKTTYRDKPKGKKAQSQFSSKKKRRD"
FT   CDS           1238..3349
FT                 /product="DIRS-5_MSe_2p"
FT                 /translation="TTLSRKAIIFIIIRNRQLVNYRRIGFFAATPIQKMIS
FT                 SNRIDDRIKKVKLPTATNQKVRRHNRNFHLRKNVAIDYRLFQGGCLKQFHC
FT                 VWRNLGAPNKICKLLDGTRIPFLLKPPLIFPTSTVMKCYRTKNSLDMTIQI
FT                 QTMLESGIIEHAEQSPSYLSTFFLVPKADKSLRPIFNLRQLNQFVVTKPFQ
FT                 LFSHFRVPSFLQNQDWMAKIDLSQAYFHVPIAHQHRRFLRLNYHPDPNQDR
FT                 LLQMTCLPFGLSSAPRTFASITNWVAEFLRSHNIRCVVYLDDFLLANQSKL
FT                 QLEEDIAFTTKMLQVLGWTINFNKSVLAPTKCLEYLGITWDTKRNAKSLSQ
FT                 SKCQTLRKALQLQLTKSKWSLKQYQSLMGRLNFATFVTPRGRLHCRTLQHY
FT                 SRQLPTEHPYRQISMPQPVCSEMEWWFQAVGKTMPVHESPITHLLTTDASD
FT                 IGWGAQLGDKCITGTWTKQQKSWHANKKEMFAVFAAIRDEENQLQSAQILL
FT                 QTDNRTVVSYINKEGGTKSQKLLRQTRQLLEVLDRRDINLTAHYLPGRFNA
FT                 EVDALSRQKSCPEWLLTNTATNYIFQMWGTPEIDLFASKTAHVVPRYISMD
FT                 REDREAQGCNAFCYQWHYNLAWLFPPPNLIPRVLRHLNQASGKYILIAPRW
FT                 NKVFWQADVQLRAREPPYLIPDLSHVLIDTKTGTHPPQVQNLVLEAWLISG
FT                 GKIC"
FT   CDS           1459..4308
FT                 /product="DIRS-5_MSe_3p"
FT                 /translation="LSVISRRLSKTISLCLEKFRRTKQNLQTFGRDTYSIP
FT                 SQTAFDISDINSYEMLQNKKFSRYDNTDPNYVGVGNNRTRGTESQLPVHVL
FT                 FSTQGGQISSPHLQLATAESICRNQTVPIIQPFSSSFISAKSGLDGKNRPE
FT                 PSLFSCADCSSTSQIPEAKLSSRSEPGPTTPDDMLAVRPVVSTKDIRLNNQ
FT                 LGGRIPKESQYPMCRLSRRFSSGKPVETTTRGRYRIHNKNVTSIGLDNQLQ
FT                 QVCTGSDKMPRISRHNLGYKTQREIPVAVKVPNATQGTSVTAHKEQVVPQT
FT                 VPISNGETQFRNICNSERSVTLSYTATLQSTVANRTSIPSDQHATTGLFGD
FT                 GMVVSSRRKDYAGSREPNNSSADYRCIRHRLGSTTWRQVHNGDLDKTTEVL
FT                 ACKQKRNVCSFCSNTRRRESTSICSDTTTNGQSHCSFVYKQRGRHEVTKAA
FT                 QTNSTTSRSFRQTGYKSDSALLARKIQCRSRRSISPKILSRMVIDKYGNEL
FT                 HFSNVGYTGDRSVCVQNSSCSTQVYFNGQGRSGSARLQRILLPVALQPSMV
FT                 VPSTKSHTQSTQTFESSQREIHFNSPQMEQGVLASGCSTSSARASLSNSRL
FT                 ISRTHRYEDRYASASSSEPSFGGMADFGWQDLLTDWTDQERGLLMSSWRSS
FT                 TINTYRPAWNRWRNWCESHSVNHKYPNADQVARYLAHLHCDIGLAYRTILV
FT                 HKSVISTFTHVTSNIDLSSNFFVKHVLKAISVAREKPAKPPIWNPKQLLQY
FT                 LSSYFFDENNLFQVSRHTAILLLLASGRRVHDLTLLRTDSKSLIYENGNMV
FT                 LWPAFGSKTDNEKHRQSGWRLRVHPDKKLNTVFWITQLLHLTSNRRQNINH
FT                 LFITTLGDVKPASRTVIGGWIKTVLSSAGITATPGSVRSAVSSLNFVENFS
FT                 IDQILETGNWKTIHTFKNYYQRELINYESNTQNNSQSLSKYFEPVH"
XX
SQ   Sequence 4791 BP; 1571 A; 1014 C; 923 G; 1282 T; 1 other;
     tattattcgc ttcgtatcaa tatccggaat ccatcttgag tcaagcacct gtctttcctg        60
     ccttctgtca gcgtatttcc ggttccctct ccgttttagc ccccactata cccccacttt       120
     gtcattgagc gcttgtcagg tgaaggtccg attttggatc attatagcgt cgtttttcgc       180
     gccgatcagt tgtcagcaca agtaaaactt cgcaatatta tcaaaatatt cgttaatttt       240
     ggaattatta aaaaaaaaaa aatattggat tagattccct ctccagtgaa tatggaagaa       300
     gaaaatttaa aaactgttgt tgcggatgat tcgaacccac gaaaacgtgg acattcttca       360
     tcgtcgagtt ctgatagtga caacgattca tcatcggaca aggatatcga ccatcaggaa       420
     actaacgaaa ccgtaagcta tgcacatttt caatttctag cacaacaagt tgcttttcta       480
     acgaatctca ttgaaaaaca amatgaaaaa agtcatgaaa atttaattag tgcacaagtc       540
     gtttctaacg atttgaattt acgacggcct gttaacaatg aaggcagtaa ttgtaatcgg       600
     ctaaatattt tatccgaagt aagcacaacg gttaaagacc ctatttatcc aaaatctgaa       660
     gatagatacg tagataaact atcgcagttg caacgtttta agtgtaacga ttggtattct       720
     attagatttt cggatgctca gaaaaaatat ttaacaaccc ccggtttcat agagctagga       780
     gtaaacgacg aattaaagcg ttttgaagct tctatgataa aagaagactc acgttcacat       840
     ttattagaac gtacctgtgc gggattgact aaagcattac tttctcaaaa ggatgaattg       900
     catagaacac tacaaacact agttgattgg gcaaatgaaa gtaaagagtc tttgagccca       960
     aactccctat ttgagaagat agaagaatta ttctctaaag actcaacgta tagcaaagtg      1020
     tcggacgatc tattgcaaat agtatgtgga agacgagcag actttataaa ttgccgccga      1080
     gaggttttac tacgtcaaat tccagaaggt tttcatcgag atgttttgag taaaataccc      1140
     ccgagtccag aatatctatt taatgatgaa gcattacaaa gttacattca aaaaattgga      1200
     ggggtggata agctatctgc atcttcaaaa gttttgaacc actctcagtc gaaaggctat      1260
     aatttttatc ataatccgaa accgtcaact agtaaactac cggaggatag gttttttcgc      1320
     cgcgacacca atacaaaaaa tgataagcag caatcgcatc gacgatcgaa tcaaaaaggt      1380
     aaaactacct accgcgacaa accaaaaggt aagaaggcac aatcgcaatt ttcatctaag      1440
     aaaaaacgtc gcgattgact atcggttatt tcaaggcggt tgtctaaaac aatttcattg      1500
     tgtctggaga aatttaggcg caccaaacaa aatttgcaaa cttttggacg ggacacgtat      1560
     tccattcctt ctcaaaccgc ctttgatatt tccgacatca acagttatga aatgctacag      1620
     aacaaaaaat tctctcgata tgacaataca gatccaaact atgttggagt cgggaataat      1680
     agaacacgcg gaacagagtc ccagttacct gtccacgttc tttttagtac ccaaggcgga      1740
     caaatctctt cgccccatct tcaacttgcg acagctgaat caatttgtcg taaccaaacc      1800
     gttccaatta ttcagccatt ttcgagttcc ttcatttctg caaaatcagg attggatggc      1860
     aaaaatagac ctgagccaag cttattttca tgtgccgatt gctcatcaac atcgcagatt      1920
     cctgaggcta aattatcatc cagatccgaa ccaggaccga ctactccaga tgacatgctt      1980
     gccgttcggc ctgtcgtcag caccaaggac attcgcctca ataaccaact gggtggccga      2040
     attcctaagg agtcacaata tccgatgtgt cgtctatctc gacgattttc ttctggcaaa      2100
     ccagtcgaaa ctacaactcg aggaagatat cgcattcaca acaaaaatgt tacaagtatt      2160
     gggttggaca atcaacttca acaagtctgt actggctccg acaaaatgcc tcgaatatct      2220
     cggcataact tgggatacaa aacgcaacgc gaaatccctg tcgcagtcaa agtgccaaac      2280
     gctacgcaag gcacttcagt tacagctcac aaagagcaag tggtccctca aacagtacca      2340
     atctctaatg gggagactca atttcgcaac atttgtaact ccgagaggtc ggttacactg      2400
     tcgtacactg caacactaca gtcgacagtt gccaaccgaa catccatacc gtcagatcag      2460
     catgccacaa ccggtctgtt cggagatgga atggtggttt caagccgtag gaaagactat      2520
     gccggttcac gagagcccaa taactcatct gctgactaca gatgcatccg acatcggctg      2580
     gggagcacaa cttggcgaca agtgcataac ggggacttgg acaaaacaac agaagtcctg      2640
     gcatgcaaac aaaaaagaaa tgtttgcagt ttttgcagca atacgagacg aagagaatca      2700
     acttcaatct gctcagatac tactacaaac ggacaatcgc actgtagttt cgtatataaa      2760
     caaagagggc ggcacgaagt cacaaaagct gctcagacaa actcgacaac ttctcgaagt      2820
     tttagacaga cgggatataa atctgacagc gcattacttg ccaggaagat tcaatgcaga      2880
     agtagacgct ctatctcgcc aaaaatcttg tccagaatgg ttattgacaa atacggcaac      2940
     gaattacatt tttcaaatgt ggggtacacc ggagatagat ctgtttgcgt ccaaaacagc      3000
     tcatgtagta cccaggtata tttcaatgga cagggaagat cgggaagcgc aaggttgcaa      3060
     cgcattttgt taccagtggc attacaacct agcatggttg ttccctccac caaatctcat      3120
     acccagagta ctcagacatt tgaatcaagc cagcgggaaa tacattttaa tagcccccag      3180
     atggaacaag gtgttttggc aagcggatgt tcaacttcga gcgcgagagc ctccttatct      3240
     aattccagac ttatctcacg tactcataga tacgaagaca ggtacgcatc cgcctcaagt      3300
     tcagaaccta gttttggagg catggctgat ttcgggtggc aagatttgtt aaccgactgg      3360
     accgatcaag aacgagggct actaatgtca agctggagga gctctacaat aaacacctac      3420
     aggccggcat ggaacagatg gaggaactgg tgcgagtccc attcagttaa ccataaatat      3480
     cccaatgctg accaagtcgc tcgctatcta gcacatttac actgtgacat tggtttggca      3540
     tatagaacta tcttggtgca taaatctgta atttctacat tcacacatgt aacttctaac      3600
     atagatttat cgtctaattt ctttgtaaaa catgttctaa aggctatttc agtagcacga      3660
     gaaaaaccag caaaaccacc aatttggaat cctaaacagt tactacaata ccttagttcg      3720
     tattttttcg atgaaaacaa cctatttcaa gtatcgagac atacagccat tttattacta      3780
     ctagcttcag gccgacgagt tcacgatctt acattgttac gcaccgacag caaaagttta      3840
     atttatgaga acgggaatat ggtattgtgg ccggcttttg gatccaaaac cgataacgaa      3900
     aagcatagac aatctgggtg gaggcttaga gttcaccctg ataaaaaatt aaacacagta      3960
     ttttggatta cacaattatt acatttaaca tcaaaccgta ggcaaaacat aaatcactta      4020
     tttatcacaa cgttgggtga tgtcaagcct gcatctagaa ccgtcattgg tggatggatt      4080
     aaaactgttt taagttcggc aggtataact gccactccag gatctgttag atccgcagtg      4140
     tcctccctga attttgtaga aaatttctcc atagaccaaa ttctcgaaac gggaaattgg      4200
     aaaaccattc atacatttaa aaattattat cagagagagc tgataaatta tgaatcaaat      4260
     acacaaaata attcacaatc attgtccaaa tattttgagc ccgttcatta attaaggttc      4320
     atattgttat tcatgttatt atttagctac tttgtacaac tcataagtaa tttacaacaa      4380
     atgagttttt cattaaatta cgatacccat aattttacac attatagcgt ctttatattg      4440
     agcgcaccag gtgataacaa acacatcact caagatggat tccggatatt gatacgaagc      4500
     gaataataga gagtttttcc taaaataaaa acttacctat tatttcttca tcaatatccg      4560
     gaatccaggt aaggtctacc tggtgcatca tgagctctat aatgatccaa aatcggacct      4620
     tcacctgaca agcgctcaat gacaaagtgg gggtatagtg ggggctaaaa cggagaggga      4680
     accggaaata cgctgacaga aggcaggaaa gacaggtgct tgactcaaga tggattccgg      4740
     atattgatga agaaataata ggtaagtttt tattttagga aaaactctct a               4791
//
ID   DIRS-5_SiOr repbase;    DNA;    INV; 5226 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-5_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5226
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 8-8 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 143-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1211..1741
FT                 /product="DIRS-5_SiOr_1p"
FT                 /translation="MSIVQNQLGNGLSALAKGLNALLVDKANADVGSKVMP
FT                 CLIDAGKVITDAFHMITKSRKFHIEANLNPTVKKIVRDSKPDKFLCGENFS
FT                 EKFKEAKNHQRTGKELKFAKANFVVNRQSSSTTYARSSGQSVRRSFRNQPT
FT                 LNYRGAYHKNKVKRTPPPRTQRRYPVKAPYYQKGGYQK"
FT   CDS           1615..3627
FT                 /product="DIRS-5_SiOr_2p"
FT                 /translation="EPADFKLPRSLPQEQGETDTTTSDPTKVPCESTLLPE
FT                 RGISKIMEVSAYGGRLRYFTEVWKNITNSISILSWLEGYKIPFREKPIQGH
FT                 RPIVSLLSASEERKVAVIILKFEKQGIISQCCHSKNEYISSFFLVPKSDGS
FT                 SRFILNLKNLNKFLAPVPHFKLENYKSVRDLIYKNCFMSTIDLKDAYYMIP
FT                 ISPNFKKFLRFEFNGLLFQYNVMPMGLSSAPYVFTKMLKPVLNKLRSLGIF
FT                 CVMYLDDIFVIGRTQQETQDHVKKIIYLLEHLGFIINYKKCKLIPANTCKY
FT                 LGFIYNSEKLTVELPMEKKTKIISLVTKLHNKEKVSIKELSKVFGTLIAAC
FT                 PAVSYGWLHIKSLERSKYLALKKFNTYKAQILITNQIKIELKWWENSILNS
FT                 VKNINMENFDLEIFTDASNTGWGVVCGNNKTHGFWGEIEGSHHINYLELLA
FT                 IFYALRCFVLNKSHINIVFRVDNKTAIAYINKMGGIRFQKLNNLSKEIWSW
FT                 CEERNIFIYATYIASKDNTVADMESRSVAIDTEYCLNMQYFQKIVFDFGNP
FT                 TIDLFASNINSKCTKFISWRKDPGAIASDAFSINWGNYNNFYAFPPFSLVG
FT                 RVLNKIIRDQAKGILIVPFWQTQYWYPLFLRLCVKKPLTLPPNEFLLLSPF
FT                 RTPHPLWRQLSLVVGKLSGDHF"
FT   CDS           3540..4574
FT                 /product="DIRS-5_SiOr_3p"
FT                 /translation="IFIIISFQDPPSALETIIPSSREIIRGSFLKRGIPDA
FT                 AIPILIDSISKATFKQYAGTYKKWWLFCQRNKVDIYQANVGNIIAFLNDLF
FT                 LNKASYTTLNTHRSALSLILNYSNGDEILIKRFLKGVYRAKQCFPKYKTTW
FT                 DPQPVLEYLKKLYPLNTLSLEMLTKKLASLLLLATGQRLQTISKIKIQNIH
FT                 GIESSKIKIFITEILKTSSYNRQQPVLEFNYFTECPELCVANTLKAYLLRT
FT                 SSLRKDTDEYLMLTFKKPHHIASSQTIGRWIKNILKISGIDTNKYHSHNTR
FT                 HATTSAAFRKGIGIDQIKDTIGWSQSSQVFQKFYNRPLEGNKLNFVELIQG
FT                 NN"
XX
SQ   Sequence 5226 BP; 1895 A; 815 C; 897 G; 1619 T; 0 other;
     attatatttc gtatactcgt ccaaatagat attatacatg tagttacact attcttactt        60
     tatcgagcac atttttacaa agagtgaatc ataatttttt tttctcttat catccttgcc       120
     gctgcacgcc cgacctggtt gaatcattac attattgtgc tttatcgagt acgtacagtt       180
     cggcagctaa aatgccaaaa agacgtagat ttacaagtga aagtgatagt gatgagctaa       240
     ctgcagaaag ggcacggtta aggcgaaaat tagaacgcct agaaacgaaa agaaaatcaa       300
     agggaaaaca aataaggcgt cgaattatcg aatcagacag tgatgattca agtggaagta       360
     agtaaaacca tggatggggt tacacattgc tgttagttaa taagtaacct attgtcgagt       420
     tatttattaa aaagacttaa ttaaaacatg tgtcatataa aaacttataa tacaataacg       480
     catacctacc taaacatccg actgccgaga tgtggggtaa aatcctttcc ttcttgtctt       540
     tttatttaaa ttacctttaa gcagccgact gccgagttgc ctatacgtta tttttttaaa       600
     taaataaata aattgttata aaaagtaaat aacaagaaaa attacaaaaa cctacaatac       660
     aataacgtat acctacctaa acatccgact gccgagatgt ggggtaaaat cctttccttc       720
     ttgtcttttt atttaaatta cgtttaagca gccgactgcc gagttgccta tacgttattt       780
     tttaaataaa taatataaat ctcaaacacc aaaaagaaac tgaactaatc tattttactt       840
     tttcttgaca ataatataaa ttgtaaatac ggagatatgc tcaatgacaa aaaacgtcgt       900
     aaaaaactgc ctagagaatc cgttgttgtt ctctgatatg ggacgatttc ataacagttg       960
     ggtcgcttca gataataaat aaattgttat aaaaagtaaa taacaagaaa aaattgttta      1020
     atgttattct ttggatcgaa ggcaagaact gcatgaagtg caggttcaca gggaaaacga      1080
     aatcccagat aacctatgtg aagaaaccct gtcagtagtg ccaaaaaata ttagattttt      1140
     acaaggtccg gagataaatc cagagatatc agagtccata actgatgctc agaaaaatca      1200
     cgataaatac atgtctattg tacagaatca actgggaaat ggcttatccg ccttggccaa      1260
     aggcttaaat gcactattag tggacaaagc gaacgcggac gttggctcca aagttatgcc      1320
     ctgccttatc gatgcaggca aagtgattac tgatgctttt catatgataa cgaaaagcag      1380
     gaaatttcat attgaagcta atctaaaccc cacggttaaa aaaattgttc gtgatagcaa      1440
     acccgacaaa tttttgtgtg gagaaaattt ttcggaaaaa tttaaagaag caaagaacca      1500
     ccaacgcact ggaaaagagt taaagtttgc taaggcaaat tttgtagtaa ataggcagtc      1560
     gtcttccacc acctacgcaa gaagctcagg tcaaagtgta aggaggtcct ttaggaacca      1620
     gccgacttta aactaccgag gagcctacca caagaacaag gtgaaacgga caccaccacc      1680
     tcggacccaa cgaaggtacc ctgtgaaagc accttattac cagaaagggg gatatcaaaa      1740
     ataatggagg tgagtgcata tggtggacgg ttaagatatt ttaccgaggt atggaaaaat      1800
     ataacaaaca gtataagtat tttgtcttgg ttagagggct ataaaatacc gtttagggaa      1860
     aaaccgattc agggtcatag acctatagta agtttactta gtgcatcaga agagcgaaag      1920
     gtggccgtga ttatacttaa gttcgaaaaa cagggcataa taagtcaatg ttgtcatagc      1980
     aaaaatgaat acatatcctc cttcttttta gttccaaaat ctgatggatc ctctcgattt      2040
     attttaaatt taaaaaattt aaataagttt ttggctccag tgccacattt taagctagaa      2100
     aactataaat cagtaagaga cctaatttat aaaaattgtt ttatgtcaac catagacctt      2160
     aaagatgctt attatatgat accaattagt cctaatttta aaaagttttt aagatttgaa      2220
     ttcaacggtc tactgtttca atacaatgta atgcccatgg ggttatcctc cgcaccatat      2280
     gtatttacaa aaatgttaaa accggtacta aataaactta gatcgttagg gattttttgt      2340
     gttatgtatt tagatgatat ttttgttatt ggtaggaccc agcaagagac gcaagaccat      2400
     gttaaaaaaa ttatttattt gttagaacat ttgggcttta ttataaatta caaaaaatgt      2460
     aaattaattc cagcaaatac atgtaaatat ttaggtttta tttataacag cgaaaagctt      2520
     actgtagagt tacccatgga aaagaaaact aagataatat cgttagttac taaattacat      2580
     aataaagaaa aagtatccat taaagaactt tcaaaggtat ttggcacatt aattgctgca      2640
     tgtccggccg tttcttatgg gtggctccat attaagagtt tggaacgatc aaaataccta      2700
     gcccttaaga aatttaatac atataaagcc caaatcttaa taacaaatca aattaaaatc      2760
     gaactaaaat ggtgggaaaa tagtatttta aattctgtta aaaatataaa catggaaaat      2820
     tttgatttag aaatatttac tgatgcctcc aatactggct ggggggtagt atgtggtaat      2880
     aacaaaactc atggattttg gggtgagatt gaaggaagtc atcatataaa ctacttagaa      2940
     cttttggcga tattttatgc gcttaggtgt tttgtcttaa ataaaagtca cataaatata      3000
     gtgtttcgtg tcgataataa aacagccata gcatatatca acaaaatggg aggcattcga      3060
     tttcaaaaat taaataatct aagtaaagaa atttggtctt ggtgtgaaga aagaaatata      3120
     tttatttacg caacttatat cgcttccaag gataacacag tagcagatat ggaatcacgg      3180
     tcagtggcaa tcgacactga atattgttta aatatgcaat attttcaaaa aatagttttt      3240
     gactttggaa atccaacaat agatttgttt gcaagtaata taaacagcaa atgtacaaaa      3300
     ttcatttcat ggcgtaaaga tccgggagct atagcatctg atgcatttag cataaactgg      3360
     ggaaattata ataattttta tgccttccct ccgttttctc ttgttggtag ggtactcaat      3420
     aaaataataa gagatcaagc aaaaggtatc ttaattgtgc ctttttggca gactcaatac      3480
     tggtatccat tatttttaag actttgcgtc aaaaaaccat taactctacc gccgaatgaa      3540
     tttttattat tatctccttt caggaccccc catccgcttt ggagacaatt atccctagta      3600
     gtagggaaat tatcagggga tcatttctaa aacgaggcat tcctgacgcg gcgataccaa      3660
     tattgattga ttcaataagt aaagcgactt ttaaacaata tgcaggaaca tataaaaaat      3720
     ggtggttatt ttgccagcgt aataaggtag acatttacca ggcaaatgtt ggaaatatta      3780
     ttgcttttct taatgacctt tttttaaaca aagcatcata tacgacttta aatactcatc      3840
     ggtcagcatt atcattaatt ctaaattaca gtaacgggga tgaaattttg attaagagat      3900
     tccttaaggg tgtgtacagg gctaagcaat gctttccaaa atacaagaca acatgggacc      3960
     cccagccagt cttggaatat ctaaagaaat tatacccgtt aaatacactt tctttggaaa      4020
     tgcttacaaa aaaactcgca tcgttattat tattggcaac gggacagaga ctccaaacta      4080
     tttctaagat taaaattcaa aatattcatg gtatagaatc ctcaaaaatt aaaattttta      4140
     tcacagaaat acttaaaaca tcaagttata atcgtcagca gccagtttta gagttcaatt      4200
     attttacaga atgtccggag ttatgtgtag cgaatacatt aaaggcatat ttgttaagaa      4260
     caagttcatt aagaaaagat actgacgagt atcttatgct tacatttaaa aagccccatc      4320
     atatagctag ttcccaaact attggccgtt ggataaaaaa tatattaaaa attagtggaa      4380
     ttgatacaaa caagtatcat tctcacaata cgagacatgc tacaacctca gcggctttta      4440
     ggaagggaat tggtatagat caaatcaaag atactatagg atggtctcaa agctcgcaag      4500
     tgttccagaa attttacaat cggcctttag aaggcaataa attaaatttt gtagaattaa      4560
     ttcagggaaa taattaataa tttttaagat atatgtatct cagatctttc ataattatag      4620
     aaaataaatg tttatgtaat attttgttta cctgctaagg tattatactt aggtttaagt      4680
     gttgatgata tttttttttg attgtgtttt ttgttataaa cagaaggtaa ataaatttaa      4740
     ggttttgctt actgggaaat attagaatta tgtttaaata tattatattt ttagaaattt      4800
     ctatacataa cttgtttaat ttaactgcca acaaaaaata gaattttagg gcctttaaac      4860
     atctacatgt ataatatcta tttggacgag tatacgaaat ataattttaa gaacaaacga      4920
     cttacctgta ggaagttcgt tctgaattat atgagtatac tcgtccaaat agatatgtcc      4980
     catacccggt taattgttaa atcccacccg aaattctatt tttccacaaa atgtaatgat      5040
     tcaaccaggt cgggcgtgca gcggcaagga tgataagaga aaaaaaaatt atgattcact      5100
     ctttgtaaaa atgtgctcga taaagtaaga atagtgtaac tacatgtata atatctattt      5160
     ggacgagtat actcatataa ttcagaacga acttcctaca ggtaagtcgt ttgttcttaa      5220
     aattat                                                                 5226
//
ID   DIRS-6_FoCa repbase;    DNA;    INV; 4879 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-6_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4879
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2438-2438 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. The sequences 27-139 and 4693-4805
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           803..1255
FT                 /product="DIRS-6_FoCa_1p"
FT                 /translation="MAEVAEGFNKTMCRPLSKETSDNLKNNFKIPINCKPF
FT                 VIPKMNQEIWSHLPGPARFIDLNMQQNQFSLGIGLNALAQIANEVAKNASN
FT                 IPKEVKISILKLAIDGGNILGDQIQSISKKRRLEVKKHINSEYHGICNSQV
FT                 FFIVIIFCKQKI"
FT   CDS           1291..3471
FT                 /product="DIRS-6_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KIPVSEFLFGSDLNETLKASKTASNVIRKSFTRQGQN
FT                 QRPQPYFNPRSSLNLNRPRLFTPQRQQFGQQQRGGMFPRRRPSWQTNNFLQ
FT                 QSNSTLSKPEEVASHQANKNQAGQLKYFVNEWQKITKDRFVLRTIQGYKIP
FT                 FESEPQQLSEPNNPQMSETESKFINDAISELVISSAIKISEEEAGQFISPV
FT                 FTVAKSDGGRRFVLNLKKLNTFIFAPHFKLEDIRMAKQLVSPGCYMTVIDQ
FT                 KDAYYMIPIALESQKYLKFRWNGVLYAYTCLCFGLNLAPWLFTKIMKPVLA
FT                 YLRSRGFQNVSYLDDLLTIGRTLEACLVNLQFTIKLFEELGIRINFKKSQL
FT                 IPSREVKFLGFVICSIDMNLTLPISKKNNLVQKIIKYLSSNCNTIHKLAEI
FT                 IGILISVCPAVKYGQLYTRQLEIEKTLALENSNNSFLAKMVLSNEAIKDLN
FT                 WWLSHVQSAKKGLRKDSFDLRITTDASLTGWGAECNGQTTRGFWSILENRY
FT                 DINELEMIALFNGLKCFSGANKEILCRTDNTTTISYINKYGGCKSIKLHAI
FT                 AKSIWQWCEERQITIFASYISTKDNFVADALSRESVDEFDFMLNSSNFNLI
FT                 KNKLGDPNIDLFASNLTRQCDCFVSWKPSPGCEWVDAFTQPWTTYFYAFPP
FT                 FSLIPRVLNKIRIEKCEGIVVAPYWPTQAWFPLFNDMSISQVIIIPKNKNE
FT                 LFSPYLNRAHPLSYQVTLMAAILSGQH"
FT   CDS           3414..4421
FT                 /product="DIRS-6_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="GTSLELPSDIDGSYIIRTALNKLELPDQVINIIRKSL
FT                 SLSTWKQYESSLKKYVKFCTEKGYDVWKIDISQYLNFLSSLVESGLGYNSI
FT                 NTARSALSTVFGMNSDINIGENKLICKFMKGVYKSKPPLCKYNVTWDPSSI
FT                 LELISQWDNSTINLERLSLKLVAILALMTAQRVQTLKSLKISNIIWSNPVQ
FT                 IKLTDVLKTTTIRNQNPLIILPPYHDVRLCPVACLKIYIDKTKEIRLQNCD
FT                 QLLISFVKPHGQVTSQTISRWLCTVLKLAGIDVKEFSAHSYRHAASSTAAN
FT                 RGVNVDVIMKSVGWSATSKTFATFYHKPIVTNNMLADAVLGCNS"
XX
SQ   Sequence 4879 BP; 1585 A; 865 C; 920 G; 1509 T; 0 other;
     ttattcttca tcttccttca cttcttacat cactgtgtag tggtcgagat catgtagtga        60
     gtgagacgcg catgcctatg ttcaaagtag aaaaaagagg gtttggtgag ctcctgctgg       120
     gcgccgagag aaccattgtc tttttcatag cagtgcagtg tggacgtgtg cgccgtgagc       180
     tcccgatttt tcgttcttca acggattttt tctcgccgga ttttcgagtg ggtgtttccc       240
     gtctttccct cctgaatcaa caaggtaagg taaccatttt ttacgagggg tgggtcagtt       300
     tttccacgta agaaggatgt tttaagtgcc aaaattcaag aaaagataaa agataacagt       360
     aaaataaaat aaaactctga gcaaccttga ataggtacgg gaattggtgc ctatacggcc       420
     caaataaaat cccgaggtgt tcctatacgg ccctcaccta gattctaatt agaattatta       480
     tgtcgcagaa ttatgacaca ccccaagagc atcctgggat ctggtaattt atcagatgaa       540
     tctgataatg aagttgagaa tatcggcaaa tgtgaattct gaggcgaatg cttttgcaaa       600
     tttgttcaat ggatcaggcg agaagggtaa atttttgctt agtgctcact aatcctatca       660
     atatgagtta ttcatttgac ctgttttaat atttacgagc aaatgattgt tattaggaat       720
     tgataatgtg gcccctttgg atagtgaaat tcaagatttg ttaagggatg tggagaaatc       780
     aattgaattt gggccggaga taatggctga agttgctgag ggctttaata aaacaatgtg       840
     tcgtccacta tcaaaagaga cctcagacaa tttgaaaaat aatttcaaga tcccaatcaa       900
     ttgtaaaccg tttgttattc caaaaatgaa tcaagagatt tggtcacacc tcccagggcc       960
     ggctcgtttt atcgatttaa atatgcaaca aaatcaattc tcccttggaa ttggactcaa      1020
     tgctttggca caaattgcaa atgaagttgc gaaaaatgca agcaatatac caaaagaggt      1080
     gaagatttcc attcttaaac ttgcaattga cgggggaaat attttgggtg accaaatcca      1140
     atcaatttcc aaaaagagac gacttgaagt aaaaaagcac attaactctg aataccacgg      1200
     gatatgtaac tcgcaggtat tttttatagt aataattttt tgtaaacaaa aaatttgagg      1260
     gtttgtgcta aatgcaaaat ttttgtgtaa aagattccag tctcagaatt tctcttcggt      1320
     tccgatctga acgaaacctt aaaagcttcc aaaactgcat ccaatgttat tcgcaagtca      1380
     tttactcgtc aaggacagaa ccaacgtccc cagccttatt ttaatcctcg cagttcttta      1440
     aacttgaatc gcccaaggct cttcactccc cagaggcagc agttcgggca gcaacagagg      1500
     ggaggaatgt ttccacgtcg acgcccaagt tggcagacaa acaactttct tcaacaatcg      1560
     aactccacat tatcaaaacc agaggaagta gcaagtcatc aagctaataa aaatcaggca      1620
     ggtcaactaa aatattttgt taatgagtgg caaaaaatta ctaaggatag gtttgtgtta      1680
     agaaccattc agggatataa aattccattc gaatctgagc cacaacaatt atctgagcct      1740
     aataatccac agatgagtga aacagagtcc aaatttatta atgatgcgat ttcggaatta      1800
     gttataagta gcgcaatcaa aatttctgaa gaagaagctg gacaatttat ttcaccagtc      1860
     ttcacagttg ccaaatcaga cgggggccgt cgatttgttt taaatttaaa gaaacttaat      1920
     acttttattt ttgcaccgca ctttaaatta gaagatatta gaatggcaaa acagttagtt      1980
     agtccagggt gctacatgac ggtgattgat cagaaagatg cttactatat gatcccaata      2040
     gctctcgaat ctcaaaagta tttaaagttt cgatggaatg gcgtcctgta cgcatacact      2100
     tgtctttgtt ttggtttgaa tttggccccc tggttattca caaaaattat gaagccagtt      2160
     ctagcttatt tacgatcaag gggatttcaa aacgtgagct atttagacga tttattaaca      2220
     ataggaagaa ctttagaagc ttgtcttgtc aaccttcagt tcacaattaa attatttgaa      2280
     gagctaggaa tcagaataaa ttttaaaaag tctcaattaa ttccttctcg tgaagttaaa      2340
     tttttaggat ttgtaatttg ttcaattgat atgaacttaa cccttccgat atcaaagaaa      2400
     aacaaccttg tacaaaaaat aattaagtat ttgtcttcca attgtaacac aattcataag      2460
     ttagctgaaa taattggtat tttgatttct gtctgtccag ctgtgaagta tggtcaactt      2520
     tacacacgac aattagagat tgaaaaaact ttagcactgg aaaattcaaa taattcattt      2580
     ttggcaaaaa tggtgctgtc taacgaagct attaaagacc taaattggtg gttatcacac      2640
     gtacagtcag ctaaaaaggg gttaaggaaa gattcgtttg acttgaggat aacaactgat      2700
     gcatcactca cagggtgggg tgcagaatgt aatggtcaaa cgacgagagg tttttggtca      2760
     atattagaaa acaggtacga tatcaatgag ttagaaatga ttgcactatt taatggattg      2820
     aaatgttttt ctggtgccaa taaggaaatt ttgtgccgta ccgataacac taccaccatt      2880
     tcatacataa ataagtatgg tggatgcaaa tctataaaac ttcacgcgat tgccaagtca      2940
     atttggcagt ggtgcgaaga aagacaaata acaatttttg catcgtatat tagcacaaaa      3000
     gataattttg tagccgacgc tttatctaga gaaagcgttg acgaatttga cttcatgctt      3060
     aacagtagta atttcaactt aattaaaaac aaacttggtg atccgaatat tgatttgttt      3120
     gcgtccaatt taactcgaca gtgtgactgc ttcgtatcat ggaagccttc tccaggttgc      3180
     gaatgggtcg atgcatttac acaaccttgg acaacatatt tttacgcatt tcctcctttt      3240
     tctcttattc ctcgagtttt aaataaaata agaatagaaa agtgtgaagg aattgtcgtg      3300
     gctccttatt ggcctactca ggcctggttc ccactattca atgatatgag tatatctcaa      3360
     gtaataataa ttccaaagaa taaaaatgaa ttattttctc cttatttgaa tagggcacat      3420
     cccttgagtt accaagtgac attgatggca gctatattat caggacagca ttgaataaat      3480
     tagaacttcc agatcaagtt ataaatatta ttagaaaatc attatcacta agtacgtgga      3540
     agcagtacga atcgtcactt aaaaaatatg taaaattttg tactgaaaag ggttacgatg      3600
     tttggaaaat cgatatctcc caatatttaa attttttatc atctttggtt gaatctggtc      3660
     taggttacaa ttctataaat actgctagat cagcattgtc tacagttttt ggaatgaata      3720
     gcgatataaa tataggagaa aataaattaa tatgtaagtt tatgaagggg gtgtacaaat      3780
     ccaagccccc actttgtaaa tataatgtga cctgggatcc ttcttctatt ttagaattaa      3840
     tttcccaatg ggataatagt actataaatt tagaacggtt aagtttaaaa cttgttgcta      3900
     ttttagcctt aatgacagca caaagagttc agaccttaaa gtccttaaag attagtaaca      3960
     taatttggtc caatcctgtt cagataaaat tgacggacgt actcaaaacg accacgatcc      4020
     gtaatcagaa cccattaata attttacctc cctaccatga tgttagactt tgtcccgtag      4080
     cttgtcttaa gatatacata gataaaacta aagaaattag gttacaaaat tgtgatcaat      4140
     tgttaatttc gtttgtaaag cctcatggtc aggtaacttc acagacaatt agtcgctggc      4200
     tttgtactgt acttaaatta gctggtattg atgttaaaga gtttagtgca catagttatc      4260
     gacatgcagc gtcatcaacg gctgcaaata ggggtgtaaa tgtagacgta attatgaaaa      4320
     gtgttggctg gtctgcgacc tcaaaaactt ttgcaacttt ttatcacaag ccaattgtta      4380
     cgaataatat gttagctgat gccgtactgg gttgtaattc ataaatatga tttataataa      4440
     atttgtgctg tttgtaagat aatcatataa tattctaccc ggtctcttcc ttatcaacat      4500
     atgtacttta aacaactaca cagtgatgta agaagtgaag gaagatgaag aataattgtg      4560
     gattttgcga gcgctgcgta gcagcgtgaa gcaaaatcaa gattattaga atcttccgga      4620
     acggaagaca tcactgccca cctgcccacc cccttttctt tttatacata tgttgattcg      4680
     catactttca aaacaatggt tctctcggcg cccagcagga gctcaccaaa ccctcttttt      4740
     tctactttga acataggcat gcgcgtctca ctcactacat gatctcgacc actacacagt      4800
     gatgtcttcc gttccggaag attctaataa tcttgatttt gcttcacgct gctacgcagc      4860
     gctcgcaaaa tccacaatt                                                   4879
//
ID   DIRS-6_HeAr repbase;    DNA;    INV; 4979 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the cotton bollworm genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-6_HeAr.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4979
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5286-5286 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 145-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1050..1580
FT                 /product="DIRS-6_HeAr_1p"
FT                 /translation="MKARDKRVQDRQQQIGIATAALLCATDKLIKGDVDKI
FT                 SLISTISDVTRLLTDLHYQDTITRKKLVIPSLDQNVGKTVENQERDEFLFG
FT                 EKFNENVKSATAIKKSAGTILKQNSNRKTNYRPTQSQKSFPKKQGNYKGRP
FT                 RASMTQFKQGGGGRYQQTQSYKPRPPPRPPVKAPVRQS"
FT   CDS           1439..3472
FT                 /product="DIRS-6_HeAr_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 DNA N-6-adenine-methyltransferase (Dam)."
FT                 /translation="KAGKLQGPSPSEYDTVQTGRGRQIPADTELQAETPTT
FT                 SSSQGSCPTVLEVNTFAGRLKLFYSCWLKITQDKVVLSWLNGYKIPFLEVP
FT                 HQDFAPKNSNFTATENTIILKEINRLLKLGVLSKCKKAVEGQYFSKIFTVP
FT                 KSNGEVRFILNLKCLNRFIAPEHFKIEDMRTLCKLISKNNFMCTIDLKESY
FT                 FLVPMGTDKKYLRFWFQNRMYEFNCLPFGLSTAPFTFTKLLKPVINFLRSK
FT                 GYKSVNYLDDIICIGNSYQECLENCQMTISLLECLGFIINKEKSVIVPTKI
FT                 VEFLGFIVNTKDMTLSVTSKKRQSISLLIKKFIKMEQCPIREFAKLIGTLV
FT                 ACCPAVSYGFLYTKIIEQQKYQALNANNNNFDAIMNINDNCRKDLKWWHNQ
FT                 INISKNPIRQYNFSLEINSDASRTGWGAYCNGQVANGFWTLSDKENHINFL
FT                 ELLAAFLGLQCFAKDLQSCQILLRIDNTTAISYINRMGGIQFPKLNSLARD
FT                 IWQWCEVRRIWLFASYIKSKENKEADQESRIKNIDSEWELAKNYFQKITMS
FT                 LGEPNIDLFATRANTKCQRYISWHRDPYAENIDAFTVDWSTFNLFYAFPPF
FT                 SLISKCIQKIICDKATGIIVFPLWTSQPWYPFIADLAASEVLKFEPSKDLL
FT                 LSPFRTLHPLYNSLSLGACILSGKRSGEN"
FT   CDS           3367..4410
FT                 /product="DIRS-6_HeAr_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="TIKRFVTITFQNSTPPVQQSFPGSLHLIREAFRRKLT
FT                 PDETIEVMVASLSQNTIKQYTTALKKWWSFCNGENVYELSIPKILKFFTEM
FT                 LSQGASYATLNTCRSALSLIIDTIVGSDIQIKRFFKGVFKLKPSRPKYNDT
FT                 WDPSVVLNYIQNWSPNSSLNLEKITKKLVMLLALTTAQRIQTLSVIRLSNI
FT                 EFTDNGVKIAITDLLKTTTPCKDQVIIKLPSLEANPEICPVSTLRYYIDYT
FT                 SALREGDSDKLLISYRKPHNCASNQTISRWIRQVMAECGIDVKKFTPHSTR
FT                 HASTSLARREGVTLDCIFKAAGWSAGSSVFANHYNRPLCIDKDDYNFSKAI
FT                 CNVKV"
XX
SQ   Sequence 4979 BP; 1701 A; 912 C; 942 G; 1424 T; 0 other;
     attatactca agcttagtcc gagatatctt ctatattcac tgtgtagttc cacaatcctc        60
     gcattgtgtg tgccgcgaca tttagagaaa gcgaaaagct tcgtatccaa accgaaaagg       120
     cagcccgctg tcaacactat atctgtaagt cattcattat tttcgcgccg cgtgtgttcg       180
     ctaaaataaa aaactttatt ttgttttcga agtttttaag ttcaaatatg ccgaaaagaa       240
     agtgtgagtg taaggaagaa aggtaccaaa ggaagattaa gaggttgaaa aggaaattga       300
     agaaaaataa ggccagatcg aacgaaaatc gttcaccgtc accagtcgag tcttcgccgc       360
     catcaccggt atcatcgtgc gacgaggcag aaagtgacgc tgatgtcgaa atactcggca       420
     cggaccccgc aggtacgttt tttctacaag aaatagcatg tccagtgatc gcccctgctt       480
     tctatgacat gtggtacatg ttatacgggc actccggtgg agtgagatca acacgtggat       540
     atcctaccgt ggacagcact ataaagttat tatttcttga ctcattagcc ggtggctatg       600
     tgtcaagtag ttttcagtaa agttctcttt actaaacagc cacggggtgg cattaaacat       660
     actcatagca accaatttca cacagctggt agctgttggc attatgatta ggttatgtac       720
     agctggtagc taagtactaa caaaatcaaa cagggtttgg tatattttta ggtgctgaat       780
     gtgtgatcaa cacacaagat aaagaccctt caacagaagt gttggatgac actataataa       840
     aagccttagg gcagacctta tccagtgaaa aagaatatgg gcctgatatt cacttggagt       900
     taaaaaagag ggtcgaaggt ataattataa atggccttaa acaagaaact aaggatgaac       960
     ttgtgaaaaa gtacctagta ccttccaacc tcaagctttt agatgcacca aaacttaata      1020
     aagagctaga agggctacta aatgacgcta tgaaggcccg tgacaagcgg gttcaagatc      1080
     gccaacaaca aataggcatt gcaacagcgg ctttgttgtg tgcgacagac aaattaatta      1140
     aaggggatgt ggacaagata agtctgatct caacaatcag tgatgtaaca cgactattga      1200
     cagatctgca ttaccaggat acgatcacca ggaagaagct ggtgattcct agtttggacc      1260
     aaaatgtcgg gaagacggtg gagaaccaag aacgtgatga atttctcttt ggagaaaaat      1320
     tcaatgagaa cgtgaagtcg gccacagcca ttaaaaaatc tgctgggacc attttaaaac      1380
     aaaactccaa tcggaaaacc aactacaggc cgactcagtc ccaaaagagt ttccctaaaa      1440
     agcagggaaa ctacaagggc cgtccccgag cgagtatgac acagttcaaa cagggagggg      1500
     gcggcagata ccagcagaca cagagctaca agccgagacc cccaccacgt cctccagtca      1560
     aggctcctgt ccgacagtct tagaggtaaa tacttttgct ggtagactta agcttttcta      1620
     ctcatgttgg ttaaaaataa cacaggataa agttgtcttg tcatggctaa atggctataa      1680
     aataccgttt ttagaggtcc ctcaccaaga ttttgctccc aaaaattcaa attttactgc      1740
     tacagaaaat actataatat taaaagaaat aaatagactt ttaaaacttg gtgtactttc      1800
     aaaatgtaaa aaagctgtgg aaggtcaata cttctcaaag attttcaccg taccaaagtc      1860
     aaatggggaa gttagattta ttttaaattt aaaatgttta aatagattta ttgcaccaga      1920
     acatttcaaa attgaggata tgagaactct ttgtaaatta atttcaaaaa ataattttat      1980
     gtgtaccatt gacctaaaag aatcatattt cttggtccca atgggtacag ataaaaaata      2040
     tctacggttt tggttccaaa atagaatgta tgaattcaac tgtttaccat tcggtctaag      2100
     tactgctcct ttcacattca ctaaattact gaagccagtt ataaattttc tccgaagtaa      2160
     aggctataaa tcggttaatt atcttgatga cattatatgt attggtaatt cttaccaaga      2220
     gtgcttagag aactgtcaga tgaccataag tttattagaa tgtctaggtt ttatcataaa      2280
     taaggaaaaa agtgtcattg ttccaaccaa gattgtagaa tttttaggtt tcatagttaa      2340
     cacaaaggat atgacattgt cagtgacttc aaagaaaaga caatctattt ccttattaat      2400
     caagaaattt ataaagatgg agcaatgtcc cataagagaa tttgccaaac tgattggcac      2460
     cttagtagca tgttgcccag ctgtgtctta tggtttttta tacactaaaa taattgaaca      2520
     gcaaaaatat caggccttaa atgcaaataa caataatttt gatgcaatta tgaacattaa      2580
     tgataattgt agaaaggatt tgaaatggtg gcataatcaa attaatatat caaaaaatcc      2640
     aataagacag tacaattttt ccctagaaat aaattctgat gcatcaagaa caggctgggg      2700
     agcatactgt aatggtcagg ttgccaatgg gttttggact ctgagtgata aggaaaacca      2760
     tattaatttt ttggaactat tagctgcttt tttgggctta caatgttttg caaaagattt      2820
     acaatcttgt caaatattgc tgagaataga taataccaca gcaatttcat acataaatag      2880
     aatgggaggt atacaatttc caaaactaaa ttctttggct agggacatat ggcagtggtg      2940
     tgaggtccgt agaatatggt tatttgcctc ttatataaag tcaaaagaaa ataaagaagc      3000
     tgaccaagaa tccagaataa aaaatatcga ctcagaatgg gaattggcca aaaattattt      3060
     tcaaaaaatt actatgtcgc tgggagaacc caatatagac ttgtttgcca ccagagcaaa      3120
     tacaaaatgc cagagataca tatcttggca tagagatcca tatgcagaga atattgatgc      3180
     ttttactgta gactggtcaa catttaacct attttatgct tttcctccat tctctttaat      3240
     ttctaaatgt atacaaaaaa ttatttgtga taaggcaaca ggtatcatag ttttccctct      3300
     atggacctcc caaccctggt atcccttcat agctgatcta gcagcctcag aagtgttaaa      3360
     atttgaacca tcaaaagatt tgttactatc acctttcaga actctacacc ccctgtacaa      3420
     cagtctttcc ctgggagcct gcatcttatc agggaagcgt tccggagaaa actaactcct      3480
     gacgaaacaa tagaagttat ggtagcgtcc ttatcacaaa acactataaa acaatacaca      3540
     acagcgctta aaaaatggtg gtcattttgt aacggagaaa acgtatacga gttgtcaata      3600
     cctaaaatct taaaattttt cacagaaatg ttatcgcaag gcgcttcgta cgctactcta      3660
     aatacatgcc gttcagcgct ctcgcttatt atagatacaa tagtaggatc tgatatacaa      3720
     attaagagat tttttaaggg agttttcaaa ctaaaaccct ctagacctaa gtataacgat      3780
     acatgggatc catccgttgt gttgaattat atccagaatt ggtcaccaaa cagcagcctt      3840
     aacttagaaa aaataaccaa gaaattagtt atgttattag cccttacaac ggctcaacgt      3900
     attcagacat tgtccgttat tcgattgagt aacattgagt tcacggacaa cggtgtcaaa      3960
     atagcaataa ccgacttatt aaaaacaacg acgccgtgta aggaccaagt cataataaag      4020
     cttccttcct tagaagcaaa tccagaaatt tgccccgtat cgacactgcg atattatata      4080
     gactacacta gtgcacttag agaaggagac tctgacaaac tacttatttc ttatagaaaa      4140
     ccacataact gtgccagcaa tcaaaccata agtcgctgga tcaggcaagt tatggccgag      4200
     tgtgggattg atgtaaaaaa gtttacccct cactccacgc gtcacgcgtc cacgtctttg      4260
     gcgcgtagag aaggcgtaac tttggactgc atatttaagg ctgctggttg gtccgcaggt      4320
     tcaagtgttt ttgctaatca ctataataga ccgttatgta tagataagga tgattataat      4380
     ttttctaaag ctatatgtaa cgttaaagtt taattttaat tgagtagtga aacatttaat      4440
     tgatgttgat taatgatgtg atacctaata ttacataaga ctgattatta aatactgaat      4500
     taagaagact gattaaactc tgtgttttga ttgcgtaata aacaacctta tgattcccaa      4560
     caattctcta aacatctaca cagtgaatat agaagatatc tcggactaag cttgagtata      4620
     attacataat taaacgaact tacctgaagt gaagttctat tgtaattata cgaagagctt      4680
     agtccgagat atcaagctcc cacccaccct ttttcataat catagattat atgcccctgg      4740
     aaggttggaa atcataatga tactactaat gctctgaaaa gaatgactta cagatatagt      4800
     gttgacagcg ggctgccttt tcggtttgga tacgaagctt ttcgctttct ctaaatgtcg      4860
     cggcacacac aatgcgagga ttgtggaact acacagtgaa tatagaagat atctcggact      4920
     aagctcttcg tataattaca atagaacttc acttcaggta agttcgttta attatgtaa       4979
//
ID   DIRS-6_MSe  repbase;    DNA;    INV; 5200 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   DIRS retrotransposon from the tobacco hornworm genome: consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-6_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5200
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 552-552 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 139-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..1715
FT                 /product="DIRS-6_MSe_1p"
FT                 /translation="MSDPQENIMKDKHNTTRPVCENDSVSSSSESSSSASS
FT                 DHSRRKSRRHKKHKRSKTDRLLEKLSKQVTDLRTKYALVHEKTFSDNRHSD
FT                 DSSFSDSVSRVLYRDTEEQVPVSTSNFNINLETSLKVPSVPKTTPQYLEML
FT                 NNLQRFNSTDWSEVRFSDVQKAYAHSPGFIELEVNDEIKAYCTNRHLAYAE
FT                 KAFAVLTYALLKQREVLQDELRQFLTWAHTSELNFEELNEKINNVFLKGEF
FT                 FKVSNDILQMVCGHRADMIQQRRDNILSFVKEPLNKYALKKIPPTNSHLFE
FT                 PQGLTSAIDKAGGVKKAFWSISKHGNTDSAAQAGPSRPFRDPAQGRSKTKT
FT                 PAQGGTSGNSRPAQGPCCSYHPEWQPHSRNYPAQGHFSGENPYKGAAKWNK
FT                 SFQEGARKQSYHNQGGRPSAKSNKRSASPSYKDRSNNKRRRF"
FT   CDS           1327..3597
FT                 /product="DIRS-6_MSe_2p"
FT                 /translation="KRHFGLFPNMEILILLRKQDRVDHFETPRRGAQKQKH
FT                 LRKVALLAIQGLRKALVAHIIQNGNRIPETILRKDTLVGRILTKELQNGTS
FT                 HFKKELESNPITTKVGAPRLSQINVLHRRPIKTDLTINADVSDALQRKFQA
FT                 GQLQLFYHHWKQLGAPLHILKIIQGYRIPFIQKPPLIMPLENGRFYHTPDS
FT                 IKMTNAIEELLRDGVLENAAMSPSFLSTMFLVPKSDGSLRPIFNLKRLNVY
FT                 VHTGNFHLLNMYQVSNFLQPNDWLAKIDLSQAYFHLPIALSHRPFLRLFYK
FT                 SKMFQMTCLPFGLSSAPQAFASVTNWVAQILRNQGIRILVYLDDFLIAHQN
FT                 SDVLRSQVSTVLNTLIYLGWKINITKSILQPQKKIEYLGILWDPCQNLKFL
FT                 PEKKCQGLSAQLHLLLECKGACLKELQSLVGTLNFASFAISRGRLNYRSIQ
FT                 AHCNSLLEAKALKVFPLPQHVLQEMIWWVVHLREPSVIHVPHPTYFLTTDA
FT                 SSVGWGARLNNHYLSGLWSDAEKSLNSNLKEMLAILKALELHALLMRNQSV
FT                 LIQSDNRTVVSYIRNEGGTRSKALTDLCRSVFLLLDQYKIHFSIHYIPGKF
FT                 NSEADKLSRRLALPEWHLLPSATKKVFAHFGKPTIDLFASVRAHVVPAYCS
FT                 LDQKDHKAVFHDAFSIAWNYQLAWIFPPPHLIPRVLSHMNQSQGYYLIVVP
FT                 LWERVFWRADLISRTLAPPLIVEDLQQVLVDVTTGLCPPNVSQMTIEVWKC
FT                 GAGPRI"
FT   CDS           1719..4541
FT                 /product="DIRS-6_MSe_3p"
FT                 /translation="RTAKKVSSWSTSTFLSSLEAIGRTIAHIKNHSRVPYT
FT                 FYTKTSFNHASREWSVLSHSRLNKDDKCYRGITKRRCLRKRRNVTKFLIDN
FT                 VSCSEKRRVTPTNIQFKEVKRIRSHRKFSFAQHVPSEQFPATKRLVGENRF
FT                 VTGLFPPTNSFKSQAILTSVLQEQNVPNDLSTFWPEFGTTSIRIGDELGRS
FT                 NPKKSGDKNSSISRRFFDRSSEFRCLEVTSQHSSEHINISRLENQHNKVNF
FT                 TTAEENRISGNPLGSMSEPEISSRKEMSRFECSTTPSLRMQRSMSEGASKP
FT                 SRYIELCKLCHIQRKAQLQVDTSTLQFTSRGQGTESFSSTTTCLARNDMVG
FT                 SPLKRTISDPCSSSHIFSDNRRFERRLGGTPEQSLPVRAMVGCRKIIKLQL
FT                 KRNVGYSKGTRITRPSHEESKRVDSERQPNRCLIHSKRRRNKVESPDGPLP
FT                 ISVPLVGSIQDSLLDTLHSREVQQRSGQTIETPSPSGMASVTFCNKEGVCT
FT                 FREANNRSFCIGESSCSPSLLFFGSERSQSCLPRRVFNSMELPVSVDISTP
FT                 SSNSESVISHEPVARILPYRGSTVGTSFLESRFDKQNIGSTFNSRGSSTGF
FT                 SRRNDRSLSPQRISNDDRSLEMWGWSKNLTSWSYKQKALLLSSWRPSTLRT
FT                 YKPAWDRWRKWAADHHVDFSQPSGSDLARYLADLHEIYRLSYNTIVLHKSV
FT                 VSTLSNADSSGSLSSHILVKQVLKSIALKTPRVLKSPIWDVDIVLNYLSNK
FT                 VLNENSMYEMARHTATLLMLYSGRRIHDLTLLLADQEHCIVGKDHIILWPF
FT                 FGSKTDSVDYRQSGWRLNRHLENKSLDPVYCIEQIIHLFEDNRKKAKCNNL
FT                 FLTICGEPRAASRTIIGRWVKSVLKDAGIQASAGSVRSAVASKDWMDNLPI
FT                 DDILAKGNWRSANTYHRFYRKEVLPITKPVSVIFNPI"
XX
SQ   Sequence 5200 BP; 1597 A; 1099 C; 1009 G; 1495 T; 0 other;
     attaagtaac tgtaccgttt attcgaaacc taacttataa taacgaagaa cggctattcc        60
     tttccctttc ctcctctata tagctatctc tctcgcacat cccccaccac cagcaggtat       120
     ctccaaggcg tgagtgactt ggagcggcgt tcattggcgt ccaatttccc gccgcgtacg       180
     cacgtactcc tctgcacaat actgacgtac ctcgcgtcgg ttcaatataa gtagcaaaaa       240
     tatttatttt aacaacagac actcaaaagg ttttttatca ttttttatca agtcactgtg       300
     ttgaatatca ttactttgcg ctaaaatatg ttactgctca tctacctaca tatctaattt       360
     gtaattttta tttttatttt tagcatatta ttttactagc tatcataatg agtgatccgc       420
     aagaaaatat tatgaaggac aaacataata cgacacgtcc agtctgtgaa aacgattctg       480
     tgagttcttc atcagagtcg agcagttcag caagttcgga ccatagtcgt agaaaatcgc       540
     gccgtcataa aaaacataaa cgaagcaaaa cggatcgttt attggaaaag cttagtaaac       600
     aggtgactga tttacgtact aaatatgcac tagttcatga aaagacattt tcagacaatc       660
     gtcattcaga tgacagttct ttttctgatt cagtcagccg tgttctgtat agagatacgg       720
     aggagcaggt acctgtttca acatcaaact ttaatattaa tttagaaacc agtcttaaag       780
     taccatccgt gcccaagact actccccaat atttggaaat gttaaataat cttcaacgat       840
     ttaatagcac agattggtct gaagtccgct tttcggacgt tcaaaaagct tatgctcata       900
     gtcctggatt tattgaactc gaggttaatg atgagattaa agcctattgt accaaccgtc       960
     atttagcata cgcagaaaaa gcctttgcag tattgactta tgcgctactt aaacaaagag      1020
     aggtgcttca agatgaattg cgccagtttt tgacatgggc acatacatcc gaacttaatt      1080
     ttgaagaact aaatgagaaa ataaataacg ttttcctgaa gggagaattt ttcaaagttt      1140
     ccaatgatat actgcagatg gtatgcggtc acagggccga catgatacag caacgacgtg      1200
     acaatatact atcctttgtt aaggagcctt tgaacaaata tgctttaaag aaaataccgc      1260
     caacaaatag ccaccttttt gaaccacaag gtcttacgtc tgctatagat aaagctggtg      1320
     gtgtaaaaaa ggcattttgg tctatttcca aacatggaaa tactgattct gctgcgcaag      1380
     caggaccgag tagaccattt cgagaccccg cgcaggggcg ctcaaaaaca aaaacacctg      1440
     cgcaaggtgg cacttctggc aattcaaggc ctgcgcaagg cccttgttgc tcatatcatc      1500
     cagaatggca accgcattcc cgaaactatc ctgcgcaagg acactttagt ggggagaatc      1560
     cttacaaagg agctgcaaaa tggaacaagt catttcaaga aggagctaga aagcaatcct      1620
     atcacaacca aggtgggcgc ccctcggcta agtcaaataa acgttctgca tcgccgtcct      1680
     ataaagacag atctaacaat aaacgcagac gtttctgacg cactgcaaag aaagtttcaa      1740
     gctggtcaac ttcaactttt ttatcatcat tggaagcaat tgggcgcacc attgcacata      1800
     ttaaaaatca ttcaagggta ccgtatacct tttatacaaa aacctccttt aatcatgcct      1860
     ctagagaatg gtcggttcta tcacactccc gactcaataa agatgacaaa tgctatagag      1920
     gaattactaa gagacggtgt cttagaaaac gccgcaatgt caccaagttt cttatcgaca      1980
     atgtttcttg ttccgaaaag cgacgggtca ctccgaccaa tattcaattt aaagaggtta      2040
     aacgtatacg ttcacacagg aaattttcat ttgctcaaca tgtaccaagt gagcaatttc      2100
     ctgcaaccaa acgattggtt ggcgaaaata gatttgtcac aggcctattt ccacctacca      2160
     atagctttaa gtcacaggcc attcttacgt ctgttttaca agagcaaaat gttccaaatg      2220
     acctgtctac cttttggcct gagttcggca ccacaagcat tcgcatcggt gacgaattgg      2280
     gtcgctcaaa tcctaagaaa tcaggggata agaattctag tatatctaga cgattttttg      2340
     atcgctcatc agaattcaga tgtcttgagg tcacaagtca gcacagttct gaacacatta      2400
     atatatctcg gctggaaaat caacataaca aagtcaattt tacaaccgca gaagaaaata      2460
     gaatatctgg gaatcctttg ggatccatgt cagaacctga aatttcttcc cgaaaagaaa      2520
     tgtcaaggtt tgagtgctca actacacctt ctcttagaat gcaaaggagc atgtctgaag      2580
     gagcttcaaa gcctagtcgg tacattgaac tttgcaagct ttgccatatc cagaggaagg      2640
     ctcaattaca ggtcgataca agcacattgc aattcacttc tcgaggccaa ggcactgaaa      2700
     gtttttcctc taccacaaca tgtcttgcaa gaaatgatat ggtgggtagt ccacttaaga      2760
     gaaccatcag tgatccatgt tcctcatccc acatattttc tgacaaccga cgcttcgagc      2820
     gtcggttggg gggcacgcct gaacaatcat tacctgtcag ggctatggtc ggatgcagaa      2880
     aaatcattaa actccaactt aaaagaaatg ttggctattc taaaggcact cgaattacac      2940
     gcccttctca tgaggaatca aagcgtgttg attcagagcg acaaccgaac cgttgtctca      3000
     tacattcgaa acgaaggagg aacaaggtcg aaagccctga cggacctctg ccgatcagtg      3060
     ttcctcttgt tggatcaata caagattcac ttctcgatac attacattcc cgggaagttc      3120
     aacagcgaag cggacaaact atcgagacgc ctagcccttc cggaatggca tctgttacct      3180
     tctgcaacaa agaaggtgtt tgcacatttc gggaagccaa caatcgatct ttttgcatcg      3240
     gtgagagctc atgtagtccc agcttactgt tctttggatc agaaagatca caaagctgtc      3300
     ttccacgacg cgttttcaat agcatggaac taccagttag cgtggatatt tccaccccct      3360
     catctaattc cgagagtgtt atctcacatg aaccagtcgc aaggatatta ccttatcgtg      3420
     gttccactgt gggaacgagt tttttggaga gccgatttga taagcagaac attggctcca      3480
     cctttaatag tagaggatct tcaacaggtt ttagtcgacg taacgacagg tctttgtccc      3540
     cccaacgtat ctcaaatgac gatagaagtt tggaaatgtg gggctggtcc aagaatctga      3600
     catcttggtc atacaagcaa aaagctctat tactctctag ttggcgtccg tcgacattac      3660
     gaacgtacaa acctgcttgg gatcgatggc gcaaatgggc tgcggatcac cacgtcgatt      3720
     tttctcagcc atcaggctca gatttggcac gttatttagc agatttacat gagatatatc      3780
     gtctatcata caatacaatt gtactccata aatctgttgt gtctacgtta tcaaacgctg      3840
     attcttctgg aagtttgagc tctcatattc ttgtaaagca agtcttaaaa tcaattgcac      3900
     tcaaaactcc cagggtttta aaatccccaa tctgggatgt agacattgtt cttaattatt      3960
     tgtctaacaa agttttaaat gaaaatagca tgtacgaaat ggctaggcat acagccacac      4020
     ttttgatgtt atattccggc agaagaatcc atgatctaac tttgttgctg gcggatcaag      4080
     aacattgcat tgttggcaaa gatcatatta tcctatggcc attctttgga tcgaagactg      4140
     actcagttga ttatcgtcaa tcgggatgga ggcttaatag gcatttagag aataagtcat      4200
     tagatcctgt ctattgcatt gagcaaatta tccatctttt tgaggacaac cgtaagaaag      4260
     ctaaatgtaa taatttattt ttaaccatct gtggtgaacc aagggctgct tcacgtacaa      4320
     ttattggcag atgggtaaaa tcagtattga aggatgcagg tattcaagca tctgctggta      4380
     gtgtcaggtc tgcagtcgca tcaaaagatt ggatggataa cttaccaatt gatgacattc      4440
     tagccaaagg taactggcgc tctgctaata cttaccatcg tttctaccgc aaagaagtat      4500
     tacctataac taaaccggtt tctgtaatat ttaatccgat ttgatttggt aaaatttaat      4560
     tacttcaacc ttgtatcatg gaacatcaca tattgtactg atttttttga tcattaaagc      4620
     gattgattga aagtctgtgt tgaatattaa cgcctgacac gttttttaag gatatctaca      4680
     tttttataat atgtatctac ccaatattat aattattaca ttcttattat cgcacatctc      4740
     ataataatac tatttactac gcatctttca tggtaatcat agcctttgtg tccacttaac      4800
     aactatgttc acattggcgt ccatcaccac caggcgataa caaacacgtc tccgttatta      4860
     taagttaggt ttcgaataaa cggtacagtt acttaatagc agcgttttac ctaccaataa      4920
     aacgcttatt aagatactta cctttattcg aaacctaaca tgtaagggct gcctggcgga      4980
     cattgggtta taatataatc ataacggaga actcaatgaa cgccgctcca agtcactcac      5040
     gccttggaga tacctgctgg tggtggggga tgtgcgagag agatagctat atagaggagg      5100
     aaagggaaag gaatagccgt tcttcgttat tataagttag gtttcgaata aaggtaagta      5160
     tcttaataag cgttttattg gtaggtaaaa cgctgctatt                            5200
//
ID   DIRS-6_SiOr repbase;    DNA;    INV; 5044 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-6_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5044
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 9-9 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 140-bp subTIRs.
XX
SQ   Sequence 5044 BP; 1617 A; 873 C; 911 G; 1641 T; 2 other;
     attatatttc ccgcctcttc ctcttagatc actatgtagt tcactctctc gccgtaaggt        60
     ggagccacgc attttaaagc caaacaaaaa attgtgtcga tccagaccct ttcccggaat       120
     atatcacgcc gggccgcctt caattcatta ttctttcgcg tgtgagtgga accacgtcgc       180
     gtcaccgtct gtcatttata aaaaatcgga cgcgagtgat aaccagtgga ttcgaacact       240
     agtgttacac tacagatgac aaagtgcctt acaatgttac tcatcaattt ataacttttg       300
     gacttataaa ttatggacct tctgattcgg aacgtgagta cctgaaaata ttttcctttt       360
     tacaccctgt agactattac gcttaacaat gttgtaagtg gaaacaatgg atagtactac       420
     ttaacgggtt tggttgacac aaattctaat tttatacgat gctaacgagc tttgatattg       480
     gcatttcatg agcctctaat tttattctat aactttttgt gttttttgct aactagaaca       540
     gtaaaagttt ttgtctatgt gatatgtcaa ttattgttaa aatcctagtt gattatgact       600
     aagaatatat aataagtata tcgttatagg caatagttaa tatagtacag agttggtaca       660
     ttacacctgt tagcacatta catttgttag cacagttaat attgttaacg ccaacgagtt       720
     ttggcctgtg ttaaccccaa cgagttttgg catgtagtaa cgccaacgtg ttttagcctg       780
     tatcaacgcc aacgagtttt ggcctgtgtt ggccaacgtg ttttggaatg tgttaacgct       840
     aacgagtttt ggcatgtgtt aacgccaacg agttttggca agtgttaacg ccaacgagtt       900
     ttggcatgta gtaacgcaaa cgtgctttag cctgtgtcaa cgccaactag ttttggccta       960
     tgttaacgcc aacgagtttt ggcctgtgat gtagaatgta gaatgtttag gaggcgattt      1020
     aatcaccgct acctgataga tctattgtgt gttccccttt cttgagttat aacgagttat      1080
     aactcatcat acagtctcag ggctttaaca aaagccagta tctgagacgg ctccacaaag      1140
     gccagctctc catcctcgac atcagacgta ctaaagttca tggcacgaat ggttgtcgtc      1200
     tcggcgcact cagtgataag gtgttctggt gtggcctgtg ttaacaccaa caggttttgg      1260
     catgggttta cgctatccag aattttcaaa attctcgtcg tctgtcaaaa ttctattatc      1320
     taactgaaca gactttattt caatatattt tgaagagcac aagttatata tatatatata      1380
     tttttttttc tttctgcagg ttagcatgtg ttaacgccaa cgagttttgg catgtgttaa      1440
     cgccaacaag ttttgagatg ttgcatttca acctataatt ttatgtttta accgtttttt      1500
     tttgttttgc taacgagttt agtaaaaatt tatgtgttat atgtatataa atgttgtaaa      1560
     ctcctttctc tctcaaattt ggtttaaaat attataggag ggactcgacg ccgaaatgct      1620
     ctcctacctg tgcaaaaact attctcctcc taataatctg agtctcaaac aagtgctccc      1680
     aaacttaatt tagaaattct agcagttccc actgaacacc acaagaattg agatcaaaga      1740
     ctagcaaccg acaaaaccaa atgagagccg ctttagtggc aataggaaaa tctttaacag      1800
     catttcgtaa agaagggggg gggagcacac acaagggatc tgattgaatg gctcagcgat      1860
     gtaatcccaa aagcaatcag tttgtttcaa atattttttg ttaacaccca agccgaacgg      1920
     atcatttaga ttaattttaa atctaaaaac cttcaacaag tttattaaaa cagaacattt      1980
     taaattagag gatcataaaa tggtcaaaaa actcttaact aaaaatatgt ttcttgaatc      2040
     tttagacctc aagggtgcat accacttgat ccctatacat caacggcatc gtaaatatct      2100
     gagatttgtg tttcctgggc aactttatga atacacttgt tttcctttcg gccttaatac      2160
     agcgccttat ctatttacca aactgctgaa acccgtatta tattacttac gggaacgaag      2220
     ttttatcggt gttatatatt gatgactttc tattaatggg ccgtacttat gaagaatgtc      2280
     tattaaatat aactgttaca aagcaaattt tgctagattt aggatttata attaattcgg      2340
     agaagagcgt ttttgttcca tgtattaata ttaaatactt agtttttttt taatactgtt      2400
     gatagttgaa aatagtgtta aacttaccat tcgagagttt gcgaaattga tcgggatttt      2460
     attgcggctg gcccagatat caaatatgat tggctttata ccaaaaatag cgaaagagga      2520
     aatttagctc taaaaaagtc atatgggtct tataaacatg gaataaaaat tacttctgat      2580
     attttaactg accttatgtg gtggaaagat cacctttcta gcaaaaatac ttttcatagt      2640
     tttacccgta aactagaaat ttcagtcata gttccctcac gggttggggc gtttattgta      2700
     atggggataa gtgtcggggt tttttggtct aaaaaagata aaagtaatca taaattattt      2760
     ttagcgagag tttttagcga cattttttag gctaaaatgt tttgcgaata atcttgttaa      2820
     ttgtgaaata ttattgcgga tagacaatac tacgctatgg ctatctcata tatatacaga      2880
     atgggtggca ttcagttccc acatcttaac agtcttgcta gggaaatgtg ggagtggtgt      2940
     gaacagcgca acttagttat ctttgcttct tatataaagt cacaagaaaa ttttagtgct      3000
     gataaagaat ctcgttgcct agatactgaa actggattta cgattgcaaa ttatgattca      3060
     aaaatatttg ccgtaatttc cgaacgccgg aagttgactt atttgcttcc agaattaatg      3120
     caaagtgtag cagatttgct tcttagttta aagatcctag ggctgaaatt attgagcatt      3180
     tatagtatca tgggcaaact atacttttca tgcttaaaat aattactgcc ctgcaaaaaa      3240
     taattgcaat aatttgataa agatgagggt atcgtagtgg ttccctggtg gccaagtcaa      3300
     ctctggtccg ttatttcagt ctctacttat caaaaagtca ttaatttttg ctcctaatgc      3360
     tcaattagaa ctatccattg ataggacacc ccatgctcta tataccaacc tttccctgga      3420
     agcaggtctc ttatccggca ggacatgatc gttagaaagg ttccagaaga ggctattgag      3480
     gtgttaatat catctttgac attgagtcat cgataaaaca atatggaaat gggttaaaat      3540
     tatggtggta tttttgcaat cacaaaaaaa aaaaaaaaaa aaaaaagcta aaacggtaaa      3600
     catttatagc ggtaaacact gtacgctttt ctcttgcatt gctaatatca ccacaagtcg      3660
     gtgaagatta tcaaattaaa agatttttaa gggtgattac caaattttac caaaaacgac      3720
     cacctttacc caagtaccat gtaacatgga atccgacatt agttttagat tatgtaggga      3780
     cttgttaccc taatgaaaaa attagttgag aaatgttgac acgtaaatta tcgaaggtaa      3840
     tggccctgat aacggcacac agagtacaaa cattttcatt aatagaagtt cgaaacatcc      3900
     aaatatcgga aaaaaaaaga tagaaataga aatagaaata aaagttccag ccagaattaa      3960
     gacaacagct cccaataaat accaactctt attaattatt taaataattt ttttaataat      4020
     taaaaaaaaa aaaaaaamaa aaaaaagaac caaaatatgt gctgcgaagt gctacttaaa      4080
     cagaaccgct gttttaaggc aaacagacaa actttcacga cttttcctca cttacaaaaa      4140
     amcccataaa gaagcaaccg ctcagtctat cagtcggtgg attcgttggg tcttaaataa      4200
     gagtggaatt gatacatctg tttttacggc gcatagtacc agacacgcct ccatattggc      4260
     agctattaac aggggtatta acatcgatac gatacgtaat atagcagggt ggcacgagtc      4320
     atctcaagtg tttgcaaaat tttttaacag gcctctaatg acccctgata attttgcgca      4380
     agcaataatt gtcatgcaat aagcaataca accttagaat tcctagatat agtatttaca      4440
     atcgctaaat ataaatatat atttttaaat ttactattaa ggacaatttg ttattaagta      4500
     taataagggt ataatcattt agtgcgtaaa agttggccta gaaaagtata atctagggaa      4560
     gttttttttt tctttaaaat ttatatatat atatatattt ttttttgttt gtttgcagaa      4620
     taaataaagt tttctagtga taggttttat ttattcttac taaaactgtt gctctacttt      4680
     gaacatctac atagtgatct aagaggaaga ggcgggaaat ataattataa gattaaacga      4740
     acttacctaa gtgaagtttg atcataatta tatgaccgcc tcttccgaat agatcactcc      4800
     ctccctcccg gaacccgtga tctattctat cgcaacagtt ccggctttga agtaatgaat      4860
     tgaaggcggc ccggcgtgat atattccggg aaagggtctg gatcgacaca attttttgtt      4920
     tggctttaaa atgcgtggct ccaccttacg gcgagagagt gaactacata gtgatctatt      4980
     cggaagaggc ggtcatataa ttatgatcaa acttcactta ggtaagttcg tttaatctta      5040
     taat                                                                   5044
//
ID   DIRS-7_FoCa repbase;    DNA;    INV; 5124 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-7_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5124
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2439-2439 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. The sequences 27-154 and 4925-5052
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           882..1361
FT                 /product="DIRS-7_FoCa_1p"
FT                 /translation="MELETLLQDMEKTIDFGPAVMQNVSIGFVKTAVRPLT
FT                 KETKSNLKERIKIPENCKEFIVPKVNGEIWRLLPAQAKVSDIKQQQNQLVL
FT                 SQGLSTLTTISNVIASNKQKIPNEVVSSIVKHAMDCANIFGDQFQALSTRR
FT                 RFEMKRFLNPEYSSICSAQVF"
FT   CDS           3732..4559
FT                 /product="DIRS-7_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MWEPNIEHVLYYLTHLYEAGLSYSTINSNRSALSHLF
FT                 GEVQGTSVGEHKLIVNFMKGVSKLRPAAPRYSVTWNPDLVLSYIQTWDTKN
FT                 CDLKKLSLKLVSLLALSTGQRVQSLASIKVSDIVWTNPIQIKLSKVLKTTS
FT                 ITKSNPVLVLPYFTQFELCPARTLLQYRDSTHAIRNDSDLLFLSIAKPHKP
FT                 VGSQTLSKWLVNVLKLAGVDTGIFHAHSFRHASTSKASNQGVNIDTILKRV
FT                 GWSMESQTFAKYYKRPYEEVNNFAEKVLSLSKVSN"
FT   CDS           1801..3612
FT                 /product="DIRS-7_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MYWILLVALKFRLNNFPFQATEPRIPKYSVQDEVLIS
FT                 ESISKLLRSGAIVQSNEEAGQFLSTIFTVPKQDGSRRPIINLKLLNEFVEN
FT                 PHFKMESVKTAVALISSNSFMSVIDLKDAYHAIPVHQDFQKYLKFRWKGVL
FT                 YKYTCIPFGLCLAPWLYTKVNKPIIAFLRTQGVLLVSYLDDTLVVGKDREE
FT                 CLYYLDLSLQLFERLGLNVNGEKSQLQPSQQVRFLGFNLDSQKMRVVLPDV
FT                 KIQKLVRKCKEVLENDSPRLLCVAELIGVLVAACFATRYGMIYTRQLEMEK
FT                 TSALRIREGRYKGNIVLSSEAKQDIGWWINNISKEFNEMKEFCQDVVIFSD
FT                 ASLIGWGAESNGIEARGNWTNEEKCRHINVLELVAAFYGLRSFVDKSNITV
FT                 LLRVDSSNAMAYINNHGGCRSPELHAVAKQIWKWCECRNIRIRASYINTKQ
FT                 NVIADRLSRTKLDYSDFMLTKNYFENICKAFGQPNIDLFATYQTKQCEVYY
FT                 SWKPDPFSAGVDAFTFKWGEKFYAFPPFNLVGKVLNKIISDRTKGIVVVPF
FT                 WSTQPWFPLFQKLVVSNILYFGPNKKLLYDPYSRQFHQITNNLKLMVAILS
FT                 GSHYQD"
XX
SQ   Sequence 5124 BP; 1678 A; 866 C; 1023 G; 1557 T; 0 other;
     attttgcttc gtcttcctcc accatcgaca tcacaaatag tatggtagtc gttgatccag        60
     gtactgggga aacgcaagat tatgccgttt ttaaagcagt ctttttaccg ccacctggca       120
     cagcacggca cggccatgcc atagcacact catagttaat ttaggcatct ggggatacgc       180
     acgtactcac ttttcactcc agtcaaaatt atcaaatatc gaaaattcga agaatttgtg       240
     cccatcgtgt caaccttttc tgagtgacca gcggacacgc aggtaatgta agcaatttta       300
     tatttggggg tgttagttgg aggtagaagg aggataattg acaaattttg aatgtaaaag       360
     tttattttca attatatatt caattaattt gattttgtta atacaaattg gctagagatt       420
     cctcaatgag ggaaaaagcc ttggtgattg tgccagtgtt gcccaccaat tatattatac       480
     ttacaaattt ttaaaagagt tgatattttc aattaaaggc aaaatgtcta gtaatgaaga       540
     agccagtgac ctttctcaat cagttaagaa ccatgaagtt gcactcgagg ctctgaagga       600
     tgtccctaaa attttaaatg aattgtcaaa gaaatttaag atcaatcagg gggctcagca       660
     accacccgag aaagtcaagt tggtctctgg ggctctcaga tgaagagaat gaagaggatg       720
     cagatttaaa taatattatt gacaccaaga gtgatcaagg ctctgatctg aataatatta       780
     ctgataccga taacggtaat tacttatttg ttattaatgt ctattaatat tcctttgaaa       840
     atgaaagagg ttacaaattt atatcgccaa tagataacaa catggagttg gaaactttgt       900
     tacaagatat ggaaaagaca atcgattttg gtcctgctgt aatgcaaaac gttagtattg       960
     gatttgttaa aactgcggtc aggcccctaa ccaaagagac aaaatcaaat ttgaaagaga      1020
     ggatcaagat tccggaaaat tgcaaggagt ttattgttcc gaaagtaaat ggagaaattt      1080
     ggagattact tccagcgcag gccaaggtgt cagatattaa gcagcagcaa aatcaacttg      1140
     ttcttagcca gggattgtca actttaacaa caatatcaaa tgtaattgca tccaataaac      1200
     aaaaaatccc gaatgaagtt gtgagttcaa tcgtaaaaca tgccatggat tgtgcaaata      1260
     tatttgggga ccaatttcaa gcgctcagca ctcgtcgcag atttgagatg aaaaggtttc      1320
     taaacccaga atattctagc atttgctctg ctcaggtatt ttaacggtta aacatcttaa      1380
     gaattactaa tcattaagta agaagtcggt tcatacaact gtttgaaata gtttccgtca      1440
     tcggaatggc ttttcggctc agacttgaca gaaaacctaa aatcatcaaa agccacatca      1500
     agtttaatga gaaatactat gaattctaac gttcgttatc gaccgtatca acaaagtcga      1560
     cctgctcaat ttggacaagg acccagctct tctttaaact tgagtcgccc gttcccattt      1620
     cagtcccgag gaaacgggca gcgaccgaga ttcgagcgac gccaacaggg acaacaatgg      1680
     agaccccagc agtcttacca aaacaatcaa agattcagga aattttaaac gagccggtat      1740
     gtaaggcagg tagattaaaa gagtttttga aacaatgggg taaaataact agggacaaat      1800
     atgtactgga tattattagt ggctttaaaa ttccgtttaa ataatttccc atttcaagca      1860
     actgagccac gtattcctaa atattctgtt caagatgaag tgttaattag tgaaagtatt      1920
     tcaaagctcc tcaggtcagg agcaattgtt cagtcaaatg aagaggcagg ccagtttttg      1980
     tcaacaatat tcactgttcc taagcaggat gggtctagga ggccaataat taatttaaaa      2040
     ttattgaatg aatttgttga gaatccccat ttcaaaatgg aaagtgttaa aactgcggta      2100
     gcattaattt ctagcaattc attcatgtca gtaatagatc tgaaagatgc gtaccacgct      2160
     attccagttc accaggattt tcaaaaatat ttaaaattca ggtggaaagg ggttttatat      2220
     aaatatacct gtatcccatt tggactttgc ttagctccgt ggctttatac taaggtgaat      2280
     aaacctatca ttgcattttt aaggacccaa ggggttttgt tagtatctta tttagatgat      2340
     acgctagtgg taggaaagga ccgagaagaa tgtctgtatt atttagactt gtcattacaa      2400
     cttttcgaaa gactaggttt gaatgtgaac ggagaaaaat ctcagttaca gccatcacag      2460
     caagtaagat ttttaggatt taatttggat tctcaaaaaa tgcgagtagt tctacccgat      2520
     gtcaaaatac aaaaattagt tagaaaatgc aaagaagtac ttgaaaatga tagtcctcgt      2580
     ttattatgtg tagcagaatt aataggagtt cttgtggctg cttgttttgc gacacggtac      2640
     ggaatgattt acacgagaca attagaaatg gaaaaaacct ctgctctaag aattcgagaa      2700
     ggtagatata agggtaatat tgttcttagt tcagaagcaa aacaagacat aggctggtgg      2760
     attaataata tctctaaaga atttaatgaa atgaaggaat tttgtcagga tgtagttata      2820
     tttagtgatg cttccctaat tggttggggg gcagaatcaa atggtatcga agccagaggt      2880
     aattggacga acgaagaaaa gtgtcgtcac attaatgtac ttgaattagt tgctgcattt      2940
     tacgggttaa ggtcatttgt agataaaagc aatattaccg ttcttctacg agttgatagt      3000
     tcgaatgcga tggcctatat caataatcat gggggttgtc gatctcctga gttgcatgca      3060
     gtggcgaaac aaatttggaa atggtgtgaa tgtaggaata taagaattcg ggcatcatac      3120
     attaacacaa agcaaaatgt tattgcggat cggttatctc gtacaaaatt ggattactcg      3180
     gatttcatgc ttacaaaaaa ttattttgaa aatatttgca aagcatttgg tcagccaaat      3240
     attgacttgt ttgctactta tcaaacaaaa caatgtgaag tttactattc gtggaaacca      3300
     gatccgttta gtgccggggt agatgcattt acattcaaat ggggagagaa attttatgcc      3360
     ttcccacctt ttaatttggt tggaaaggtt ttaaacaaaa taatatctga tcgcacaaaa      3420
     ggaatagttg tagtgccgtt ctggtccacc cagccatggt tcccgttatt tcagaaactc      3480
     gtagtttcaa atattttata ttttgggccg aataaaaaat tattatatga tccttattct      3540
     agacaatttc atcagatcac aaacaacctc aaactaatgg tcgcaatttt gtccgggagt      3600
     cattatcaag attaaatttg tcagaatcta ctacagcaat tctgaaggcg tcaaaatcag      3660
     acggaacctg gcagcaatat gaagtagctt ttaggaaatg gaatgcattc tgtcaggaga      3720
     aactttggtc aatgtgggaa ccgaatattg aacatgtttt atattattta acacatctgt      3780
     atgaggcagg gttaagttat tccactataa attcgaatag atcagctttg tcacatcttt      3840
     ttggcgaagt acaaggtaca tccgtcggtg aacacaaatt aattgttaat tttatgaagg      3900
     gtgtttctaa gttacgtccg gctgcgccca gatattcagt tacttggaat cctgatttag      3960
     ttttatcata tatacagaca tgggacacca agaattgtga tttaaagaaa ttaagtctaa      4020
     aattagtatc cttattggca ctgtccacag gtcagagagt tcaaagttta gcttcgatta      4080
     aggtgtcaga tatagtatgg acaaatccca tacaaataaa attgtcaaaa gttttaaaaa      4140
     ctacaagtat cactaaatct aatcctgtat tagttttgcc atattttaca caatttgaac      4200
     tctgtccagc tagaactttg ttacagtaca gggactcgac ccatgccatt agaaatgata      4260
     gtgatttgtt atttttatct attgcaaaac ctcacaagcc agtgggttcc caaactctta      4320
     gtaaatggct ggtaaatgta ttaaaattag caggggtcga tacaggcata tttcatgccc      4380
     acagttttag gcatgcttca accagtaaag cttcaaatca gggcgtaaac attgatacca      4440
     ttttaaaacg agtcggctgg tctatggaat ctcaaacatt tgcaaagtat tataaaagac      4500
     cctatgaaga ggtaaataat tttgcagaga aagtattgtc gttaagtaag gtttcgaact      4560
     aacttataaa tgataatatt tattatttag ttaagctacg aaatatattc taatgctaat      4620
     attgtatgat tgcataattg gctgtatgta tgtcatggtt tgttgaaatt attaaaatat      4680
     gtcttacagt ttgtaaattt gatataaaat gcatgtactt tctttatttc ctcctcgacg      4740
     ccactttaaa atctaccata ctatttgtga tgtcgatggt ggaggaagac gaagcaaaat      4800
     tgtagatttt gcgagggcga agcccgaagc aaaatcggaa ttttgtgagt cttccgtaac      4860
     cggaagacat cacaaccctc caacccaccc ccagtagtta caggcgtcga ctcgggcttt      4920
     aaattatgag tgtgctatgg catggccgtg ccgtgctgtg ccaggtggcg gtaaaaagac      4980
     tgctttaaaa acggcataat cttgcgtttc cccagtacct ggatcaacga ctaccatact      5040
     atttgtgatg tcttccggtt acggaagact cacaaaattc cgattttgct tcgggcttcg      5100
     ccctcgcaaa atctacaatt tttt                                             5124
//
ID   DIRS-7_SiOr repbase;    DNA;    INV; 5016 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-7_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5016
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 10-10 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 124-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           362..1546
FT                 /product="DIRS-7_SiOr_1p"
FT                 /translation="MVSESSDSGNEISNKELLKKIKKLERKIHKKKRRHRQ
FT                 RSXSDDRRSWNSGRRSRTRSRSRSNSLRIRXSQNLQRDNRSPRGSISRQNS
FT                 EDRISQGSANHVLELDDHNLRDVASIEHPINEEPNTAASPVFQIHNDVDIS
FT                 EDLIKILGKDPEQNPGENAVLHPALTSRWNHLLINGLEREEKLSLLNKYVL
FT                 PSNCQAMAPPEVNPEILSILSPPNSNRDKNLQGQQTQLAKGLVALSKGMEV
FT                 LLTNKRIPKEIKENLLEYLSDSGRILTDLQYNITMVRRNLISPSLSKSVKE
FT                 AVEKTKPINFLFGTDLTEKVKEAKTLERTSKDLRSAPSTSQTKVQYTPMAY
FT                 NKYPKKRGGVNTSRNTNNPLNRARPSYRRREPMGSQKGHFSNPDHRQYRKR
FT                 K"
FT   CDS           1441..3474
FT                 /product="DIRS-7_SiOr_2p"
FT                 /translation="QSFKQGSPVLSTTRADGITEGPLLEPRSPTIQEEEIN
FT                 VSTTVLAGRLRYYRQEWQSITSSKLLLAWLNGYSIPLRQMPYQRKVPMQKF
FT                 GQQDQHFIKLAIGKLLDIGAIKKCINTRNQFISPIFLRDKPNGEKRFILNL
FT                 REFNSFVQASHFKMEDFRTAMKLLQNGCFMTTIDLKDAYFLLPVNKNHRKY
FT                 LRFSYKNQLYEFTCLPFGLSSAPYCFTKLLKPVVRTIRKQHICCVIYLDDF
FT                 LIYGNTYEECQSNTMYTIKILEKLGFLINYKKSRITPKTKQTFLGFIYNSE
FT                 KMLLELPEEKRLKIRNYIQQFQKINKVHKIRDVARLCGILISVCPAIKYGW
FT                 LYTKALERDKYIALEVHNKNYNATMKLGAEALKDLLWWFNSILGAKNNVKF
FT                 DFFDMVIFTDSSLTGWGACSSNHTAKGWWDETHRNKHINELELLAIFYGIK
FT                 CFAKNTNNISILIRTDNTTALSYINKMGGIKYKNLAHLAKEIWQWCEKRNI
FT                 WLFASYIASSENYEADKASRTQASLDTEWSLSQSFFKQIISEFGHPDIDLF
FT                 ASSFNHKCKKYVSWKPDPDSLAVDAFTLQWNKFTCFYAFPPFSLILRTLNK
FT                 VIADKAEGILVVPWWPSQPWYPLFEKLKQKEIYLGPNDNLLFSPFRDQHPL
FT                 AKSLILVAAKLSPRALSKNKYPNVRSIQC"
FT   CDS           3351..4382
FT                 /product="DIRS-7_SiOr_3p"
FT                 /translation="SSFFSFQRPTSSCKKPYPGGCKIIAEGFKQKQIPECA
FT                 INTMLKSITPSTIKQYESTYKLWWEFCHVNGISLYNPTISHVIQFLQNILE
FT                 TKNYRYGTMNSHKSALSLILQNHIETDSRVSRFMKAISKINPSAPKYNNTW
FT                 DPAQVINYFKDLGPNENLTLKQLTXKLVTLLSLVTGHRVQTISLIRISNIL
FT                 ENSAGLQIFITDTIKTSGLNKIQPCLKIPFFPDNPVLCVASTLITYKEKTM
FT                 SYRKSDQDFLFLTYKSPHGVATKQSLSRWIKGSLKEAGIDINKFKPHSVRH
FT                 ASTSSAHRQGLSVQCIMQTAGWTEQTTFTQFYNKPICDNTQFAKIIIASAQ
FT                 T"
XX
SQ   Sequence 5016 BP; 1793 A; 957 C; 848 G; 1414 T; 4 other;
     attatatttc agcgtccatt cctctatatc actttaccac gtagtacgcc cctgtcgtgc        60
     ttatgttcac tatattgaaa gtttttatct cgtatcccgg ttccctggac ttgttgctgt       120
     aactatttct cattcgcctt ttagtgcttt ccgcttaaac accggatcaa atttcatcga       180
     aattatcgat acggcgcggg aatcaaaccg ctgattcaag acttttwtcc aagtaaacgg       240
     tgtgtgtgta tgtgattata aggtgtgtat tttcttattt ggattaatat ttggattcaa       300
     gaaatgtaag tacaaaacct acaattattt ttttttggtt ttttagcaca tttcagtaaa       360
     aatggtctcc gaatctagtg attcgggtaa tgaaatctct aataaggagc tactcaaaaa       420
     aattaagaaa ctagaacgga aaatacacaa aaagaaacgc aggcacagac agcgttcawg       480
     gtcagatgat cgcagatcat ggaacagtgg tcgtagatca agaaccagat caaggtccag       540
     atcaaacagc ttaaggatac gacawtccca aaaccttcaa agagataatc gcagcccgag       600
     aggctcgata tctcgacaaa acagtgaaga tcgaatctct caaggttcgg cgaatcacgt       660
     actcgaattg gatgatcaca atctgcgaga tgtggcttcc attgaacacc ctataaatga       720
     ggaacctaat acagcagcgt cgccagtatt ccaaattcat aacgatgtgg acatatcaga       780
     ggaccttata aagattctag ggaaggatcc agagcaaaac cctggggaaa atgctgtcct       840
     ccatccagcc ttaacttcta gatggaacca tctcttaata aacggtctag aaagggagga       900
     aaaactttca ttgttaaata aatatgtgct tccctctaac tgtcaagcca tggctccacc       960
     agaagtaaac ccagaaatct taagcatttt gtctcctcct aactcaaaca gagataaaaa      1020
     tttgcaaggc caacaaaccc aattagccaa aggtctagtt gctctttcaa agggaatgga      1080
     ggttttatta actaataaaa ggattccaaa ggaaataaaa gaaaacctac tagaatactt      1140
     aagtgactcg gggcgcattc tgacagattt gcaatacaat ataacaatgg ttagacgaaa      1200
     tctgatatcc ccaagcttga gtaaatcggt gaaagaggct gtggaaaaaa ctaaaccaat      1260
     aaatttcctg tttggcacag acctaactga aaaagttaaa gaggcaaaaa ccctagaaag      1320
     gacaagtaaa gacctaagat ccgcaccctc aacatcccaa accaaagtgc aatatacacc      1380
     tatggcctat aataaatacc ccaagaaaag ggggggggtc aacaccagcc gtaatactaa      1440
     caatccttta aacagggctc gcccgtccta tcgacgacga gagccgatgg gatcacagaa      1500
     gggccacttc tcgaacccag atcaccgaca atacaggaag aggaaataaa cgtaagtacc      1560
     acagttttgg caggccgttt gagatattac agacaagagt ggcaaagcat tacatcaagc      1620
     aaattattat tagcttggct aaatggttat tccattcctc ttaggcaaat gccttatcaa      1680
     agaaaagtcc ctatgcaaaa atttggtcaa caagaccagc attttataaa gctagccata      1740
     ggaaaattac tagacatagg ggccattaaa aaatgcatta atacaagaaa tcaatttatc      1800
     tctccaattt ttctcagaga caagccaaat ggagaaaaaa ggtttatttt aaatcttcgc      1860
     gaattcaatt catttgtaca ggcatcacat tttaaaatgg aggattttag aacagccatg      1920
     aaattactgc aaaacggttg ctttatgaca actatagatt taaaagatgc ctattttttg      1980
     cttcccgtta acaaaaatca tagaaaatat ttaaggtttt catataaaaa tcaactatat      2040
     gaatttactt gcctaccatt tggcctgtct tctgcaccct attgctttac aaaattactt      2100
     aaacctgttg taaggactat taggaaacaa catatatgtt gtgtaattta tctcgatgat      2160
     tttttaattt atggaaatac atatgaggaa tgccaaagca ataccatgta cacaataaag      2220
     attctagaaa aattaggatt tctcataaat tacaagaaaa gtagaataac accaaaaact      2280
     aaacaaactt ttcttggatt tatttataat agtgaaaaaa tgttgcttga attaccagaa      2340
     gaaaaacgac tcaaaattag aaattacatc caacaatttc aaaaaatcaa taaggttcat      2400
     aaaatacgcg atgtcgcaag gctttgtggt attttaatat ctgtttgccc agccataaaa      2460
     tatggctggt tatatactaa ggcacttgaa agggacaaat acatcgctct cgaggtacat      2520
     aacaaaaatt ataatgccac tatgaaattg ggtgcagagg cacttaaaga tcttctttgg      2580
     tggtttaata gcatcttagg ggccaaaaat aatgtaaaat ttgatttctt tgatatggtt      2640
     atttttacgg actcgtcttt aacaggctgg ggcgcatgtt caagtaacca cacagccaaa      2700
     ggctggtggg atgaaacaca tagaaataaa cacataaacg aattagagtt attagcaatt      2760
     ttttatggca taaaatgttt tgctaaaaat acgaataaca tatcaatttt aatacgaact      2820
     gacaatacaa cggctttatc gtatataaac aaaatgggtg gcattaaata taaaaatctg      2880
     gcacatcttg caaaagaaat ctggcaatgg tgcgaaaagc gcaatatctg gctgttcgca      2940
     tcatacattg catcatcaga aaactacgag gctgacaaag cgtctagaac acaagcgtca      3000
     ttagataccg aatggtcctt atctcaatca ttttttaaac aaataatatc agaattcgga      3060
     cacccagaca ttgacctttt cgcttcaagt tttaaccaca aatgtaaaaa atacgtgtct      3120
     tggaaaccag accctgattc tttagcagta gatgcattta cgctacagtg gaataaattt      3180
     acgtgttttt atgcatttcc acctttttct ctaattctta gaacactcaa caaagttata      3240
     gcagataaag ccgaaggaat actagtagtg ccatggtggc ctagccaacc ttggtaccct      3300
     ctttttgaga aactcaaaca aaaagaaatt tacttggggc caaatgataa tcttcttttt      3360
     tctcctttca gagaccaaca tcctcttgca aaaagcctta tcctggtggc tgcaaaatta      3420
     tcgccgaggg ctttaagcaa aaacaaatac ccgaatgtgc gatcaataca atgttaaaat      3480
     caataacccc gtcgacaatc aaacaatacg agtcaacgta taaactttgg tgggaattct      3540
     gccatgtaaa cggaatatcg ttatataatc ctaccatctc acacgttata caatttctcc      3600
     aaaacatttt agaaacaaaa aactacagat acggtacaat gaactcacat aaatctgctt      3660
     taagcttgat cctgcaaaat catattgaaa ccgactcaag agtatcgcgt ttcatgaagg      3720
     caatttcaaa aataaacccg tcggcaccta aatacaataa cacttgggac cctgcacagg      3780
     tcataaacta ttttaaagat ttgggcccaa acgaaaatct aacactcaaa cagttaacgt      3840
     wtaaattagt cacactttta tcactcgtaa caggtcacag agtgcaaaca atatctttaa      3900
     tccgaatatc aaatatttta gagaattcag caggtttgca aatttttata acagacacaa      3960
     ttaaaacttc cggcttaaat aaaattcaac cttgtttaaa aataccgttt ttcccggata      4020
     accctgttct ttgtgtggca tctacattaa taacctataa agaaaaaact atgagctatc      4080
     gaaaatcaga tcaggacttt ttgtttttaa catacaaaag tccacatggg gttgccacaa      4140
     aacaatctct tagccgctgg atcaagggtt ctctaaaaga agcgggaata gatattaata      4200
     aatttaaacc gcactcggtt agacacgctt ctacatcgag tgcacatagg cagggacttt      4260
     ctgttcagtg catcatgcaa acagcaggat ggactgaaca aaccacattt acgcaatttt      4320
     ataacaagcc gatatgcgat aacacccagt ttgcaaaaat aattatagca tcggcacaga      4380
     cataagaatt agtgttttcg ttcattactt tatttttgtt aaacaattag gttactttat      4440
     tttttgttaa acaaacaaaa taggtttagg ctataagttt aataacatat agttaattgt      4500
     attagttata agaatttttg tttctatggt taatgttcta cttatacatg aatagtttaa      4560
     taaaaaattt ggctaaataa gcttttattg gataaaatat tcacacaccc taacacataa      4620
     tatcgaatat cgataatcgc aaccaacact ctaaacaact acgtggtaaa gtgatataga      4680
     ggaatggacg ctgaaatata attaataatc aaacgaactt acctgaagtg aagttcgatg      4740
     ttaattatat gaagcgtcca ttccgaatgt atcacttccc gcccgccctt ttctttttcc      4800
     ccaatttggt ttttgcgatt atcattaaaa tctaaataaa tgagaaatag ttacagcaac      4860
     aagtccaggg aaccgggata cgagataaaa actttcaata tagtgaacat aagcacgaca      4920
     ggggcgtact acgtggtaaa gtgatacatt cggaatggac gcttcatata attaacatcg      4980
     aacttcactt caggtaagtt cgtttgatta ttaatt                                5016
//
ID   DIRS-8_FoCa repbase;    DNA;    INV; 4971 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-8_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4971
RA   Kojima K.K.;
RT   "DIRS retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2440-2440 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The sequences 29-145 and 4784-4900
CC   are complementary.
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..1736
FT                 /product="DIRS-8_FoCa_1p"
FT                 /translation="MSGILSQKTTKESVDKLXGKLLTPGNCKFLNVPKVNP
FT                 ELWSQLPNRIKTSDAKMQYVQQFGSKSLTAFTKISDEIVKSANAIPKAISE
FT                 TILKXCLDGATASAMEFRESNQKRMQTIKPLLSPNYAAICSTTPGEYLFGD
FT                 XLPEAIKNSKTVTNLLRRGTGMRYAPYPPTRFSSNQDYGQSLNFRGQFRRG
FT                 VRRAMRGRPYNPRFPSNNNNYQQYQQK"
FT   CDS           1919..3631
FT                 /product="DIRS-8_FoCa_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="MCITKLLKINAVEKVSPNEEQFLSPIFPVPKPDGSYR
FT                 LIINLKSLNSYLPVTHFKMEDYRTVCYMMQTNCYMTVIDLRDAYHSVPISK
FT                 NDRKYLCFEWNGERYQYNCLCFGLSTAPRIFTKILKPLLSYLRSRGIMLVA
FT                 YLDDLLIMGRNKQECDKYTRIVLDWLQNLGFQVNLEKSQLLPSQEVKYLGL
FT                 LFNSTHKTLELPCNKKDKIIKSVKHWIKQPQNTIQKLAELVGYLNSCTPAV
FT                 AYAQLYIRELEIDKNAALKISNGNYDAKVTLSVRAINDLLWWTNKQHLTPV
FT                 KIRDDIYDQVLYTDASLSGWGAHSESDKTRGFWAGAELNLHINVLELKAIQ
FT                 NALKAFVNRSSIKLLIRTDSTTALSYINKYGGVRSRQCHEIAREIWQWCES
FT                 RDIILFASYISTIDNFLADELSRMAVDNSDFSLSQKSYNLICKEFGVPQFD
FT                 YFATNLSTKCDKFYSWYPCEGCQGVDAFSQKWTYFFFAFPPFSLVGRVFKK
FT                 IVSDDATGIVVVPKWEAQPWFSLFLKLCKNNYIELPPSNDLMVYLHINRPH
FT                 ELSLKTTLLAAKVWKKNFHNLNQM"
FT   CDS           4012..4548
FT                 /product="DIRS-8_FoCa_3p"
FT                 /note="tyrosine recombinase."
FT                 /translation="MLSLKLSGLLALVSGQRVQTLAAISVENIKYSKDIIR
FT                 IFVPARLKSSDQGVNQPCIVLPSYKRNKKLCVKSTLEAYLDATKQIRKDNQ
FT                 LFISTVKPHKKVCSQTISKWLVELLDISGVDTSIYKSHSYRHSSTSKAFSK
FT                 GVNINSIYNNAGWSKKSKIFGKFYNRTCDDVTDFATAVLK"
XX
SQ   Sequence 4971 BP; 1695 A; 899 C; 886 G; 1463 T; 28 other;
     aattgcattt cgccttcctc catctatcgg cgtcatatag aatacgggta gtagtacgga        60
     tatacagcca ggaaggtggc tatacgtgta aagataaaga aaagaggctc tctccctcca       120
     gcagcacgtc gtctccttca ttacggaaaa tatagcagga aggtgacgag ctctctcccc       180
     aactttttta attaactgaa attttttgaa gatacttgac tgaacttcag actctgkaca       240
     tcttaaaaac tggtaagtat aatccgtggg caatatgaag tagttttctc gagattttag       300
     aacaatgttg gataatttgt ccaaattata aatgtgggct aactatttgg tacaaatagt       360
     ttwttcattt caaaaaattt ctasaaccca caaccccttt ggtacaaagg aggttaacaa       420
     ttattaaagc tgcatagatc agccatttat agctgcattg tccagccaat tamtgctast       480
     tgactagcaa attaaagctg catwgttcag ccgattatta aagctgcata gttcagccga       540
     ttattawagc tgcatagttc agccgattat taamgctgca ttgttcagca aagataatac       600
     tttatacaaa gtaaattaaa gtgcttttga attagaatta ttcacagcta attatggcat       660
     ctcaatctga cgagaatgac cagacmaaga aaaagactag aaggtctaaa tctcaattsg       720
     caaaattgca aaaakaactg gacgagctga aagcttcctt tcaatctcaa aaagactttg       780
     aggcggagaa aaataaacct gtcmcacccc ccagtacgaa ctcagataca gatwtaaaca       840
     aamatcaagg cgctaatgaw cttggagatg amtctgatct tagtgatcta cttattcaga       900
     ataakggtac aaaccacaat ttaacctttt tataaagttt tactaaacga gttctaaaaa       960
     atttgttcta aatattagaa agcgcakacc ccgataacat aaatcctgaa attttggata      1020
     ttttgaatgc tcaagacaaa gatgaatctt tcgggccaga ggttaatgct gccgttgtam      1080
     atcgaatgtc mggaatattg tcccaaaaga ctacaaaaga atcagtggac aaactawagg      1140
     gcaaattatt gacaccaggg aattgcaaat tcttgaatgt gccaaaggtt aacccagaac      1200
     tatggtcgca gctcccaaat cgtataaaaa caagcgatgc caagatgcag tatgttcaac      1260
     aattcgggtc aaaaagttta actgccttta caaaaatatc tgatgaaatt gtaaaatcag      1320
     caaatgcaat cccaaaggct ataagtgaaa caatattgaa gmtatgtctg gacggagcga      1380
     cagcgtccgc aatggaattc agagaatcca atcaaaaacg catgcaaaca ataaagccgc      1440
     tactttcgcc aaattacgct gcaatttgct cmacaactcc gggtgaatac cttttcggag      1500
     atwatttacc ggaggctatt aagaattcaa aaacggttac aaatttactc cgacgtggaa      1560
     ctggaatgcg gtatgcacct tatcctccaa cgagattcag ctcaaaccaa gattacggcc      1620
     agtctttaaa cttccgaggc cagtttcgcc ggggtgttcg aagagcaatg cgaggccggc      1680
     cgtacaatcc ccgattcccg tccaacaaca acaattacca gcaataccag cagaagtaga      1740
     taaggtatta aatgcaggtg ctatatctaa atatattgaa aagtggaagc taataaccaa      1800
     tagtwgtcat gtattgtcaa ttgttaaagg ttataagata cctttcttgt ataaaccacg      1860
     acaatcgcaa gtccctcatc agaaasaatt tacaaaaaca gaacaaaact ctataaacat      1920
     gtgtattact aaactgctaa aaattaatgc wgtagaaaaa gtmagtccaa atgaggaaca      1980
     gtttctgtct ccaatttttc ccgtacctaa gccagatgga tcatatagat taataattaa      2040
     tttaaaaagc ttaaactcct atttacctgt cactcatttt aagatggagg actataggac      2100
     agtttgttat atgatgcaaa ctaattgtta tatgactgtg attgatttac gggacgctta      2160
     tcattcagta cccatttcaa aaaatgacag aaaatatctt tgttttgaat ggaatggtga      2220
     acgttatcaa tataactgtc tttgctttgg attgtcaaca gcgcccagaa tatttacaaa      2280
     gattttgaaa cctttattat cctatttgag aagtagagga atcatgctgg tagcatactt      2340
     agacgattta ctcattatgg gtcgcaataa acaagagtgt gataaataca caagaatagt      2400
     tttggactgg ttacaaaatt taggttttca agttaattta gaaaagtctc aactcttacc      2460
     ctcacaggaa gtaaaatact tggggctact ttttaactct actcacaaga cgctggagct      2520
     tccatgcaac aaaaaagata aaattataaa atctgtaaaa cattggatta agcaaccaca      2580
     aaacacaatt cagaaattag cagaactggt aggatattta aattcatgca ctccagccgt      2640
     ggcttatgct caattataca tacgtgagtt agaaattgat aaaaacgcag ctttaaaaat      2700
     tagtaatgga aactatgacg caaaagtaac cttgtcagtt cgggcgataa atgatttact      2760
     atggtggaca aacaaacaac atttaacacc agtaaaaatt agggacgata tttatgacca      2820
     agttttgtac actgatgcat cactttccgg atggggagca cattcggaat ctgataaaac      2880
     tagaggtttc tgggcaggtg ccgaattaaa tttacatatt aatgttcttg agctgaaagc      2940
     tatacaaaat gcattaaaag ccttcgtaaa caggtcctca attaaattac taataagaac      3000
     tgacagtaca accgcattgt cttatattaa taaatatgga ggtgttcgct cccgtcaatg      3060
     tcatgagata gcccgtgaaa tctggcaatg gtgtgaaagt cgagatataa tattatttgc      3120
     ctcttatatt tcaacgattg ataacttttt agcggatgaa ctttcacgta tggctgtaga      3180
     caattctgac ttttctctct cacaaaaatc gtataattta atctgcaaag aatttggtgt      3240
     tccacaattt gattattttg ctactaatct atcaacaaaa tgcgataagt tctattcgtg      3300
     gtatccttgt gaaggatgtc aaggcgtgga tgctttttct caaaaatgga catatttctt      3360
     tttcgctttt ccaccgttta gtttagtggg tagagtattt aagaaaattg tttctgatga      3420
     tgcaactggg attgtggtgg ttcctaagtg ggaggctcag ccttggtttt cactattttt      3480
     gaaattatgc aaaaataatt atattgaact gccaccaagc aatgatttaa tggtttattt      3540
     gcatattaat aggccccacg aattgtcact caaaacaaca ctactggcag ccaaagtttg      3600
     gaagaaaaat tttcacaatt tgaaccaaat gtagtaaagt tattagcagc ttcttgttcg      3660
     aaaaccacat gggcaaatta tgattcacag tataaaaagt ttataaaata ttgtaaggaa      3720
     aaacgttata attgtaatac tccgagaatt gatattatat taagttacct agcccactta      3780
     cacgactccg ggcttagtta ctcttcggta aattgtgcga gaagtagttt aagtttattg      3840
     ttaccaaaaa ttgataacta taatattggt gaacatccta ttgtaaccag attaattaag      3900
     gggattcgta aactaaagcc accggctgct aaatattcgc atacatggaa tgctgatgat      3960
     gttcttaata agattaattc tttagaaaat aatgaaaagt taagcttaaa aatgttatcc      4020
     ctgaaattaa gtggcttgtt ggctttagta tcaggacaac gagtccaaac tttagccgct      4080
     atttctgtag aaaatattaa atactctaaa gatataatta gaatttttgt accagcaaga      4140
     ttaaaatctt ctgatcaagg ggtgaaccaa ccatgtattg ttcttccctc atacaaacgt      4200
     aacaagaaat tatgtgtcaa atcaactctt gaagcatatt tagatgccac taagcaaatt      4260
     agaaaggaca atcagttatt tatttcaact gttaaaccac acaaaaaagt atgctcacaa      4320
     accatatcaa agtggctggt agaacttcta gatatttcag gagttgatac atcaatttat      4380
     aaatctcatt catatagaca ctcttccact agtaaagcat tttcaaaagg tgttaatata      4440
     aattctatat ataataacgc tgggtggtct aaaaagtcta aaatattcgg taaattttat      4500
     aatagaactt gtgatgatgt tactgatttc gctacggcag tattaaaata aattgtttta      4560
     tgtttaacat aacgcagtac tgttatccgt tttcgaaatt ctttaaacag ctacccgtat      4620
     tctatatgac gccgatagat ggaggaaggc gaaatgcaat taaagattac gcgagcggcg      4680
     tagccgcgaa gcgtaatcgc aattgtatga gccttccgga atcggaaggc gtcagtcccc      4740
     cccacccaag cccaatacat ttctcaacgg attctacttt aaacgtaatg aaggagacga      4800
     cgtgctgctg gagagagaga gcctcttttc tttatcttta cacgtatagc caccttcctg      4860
     gctgtatatc cgtactacta cccgtattct atatgacgcc ttccgattcc ggaaggctca      4920
     tacaattgcg attacgcttc gcggctacgc cgctcgcgta atctttaatt a               4971
//
ID   DIRS-8_SiOr repbase;    DNA;    INV; 5142 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   DIRS retrotransposon from the rice weevil genome - consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-8_SiOr.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5142
RA   Kojima N.F. and Kojima K.K.;
RT   "DIRS retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 11-11 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 137-bp subTIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           888..1745
FT                 /product="DIRS-8_SiOr_1p"
FT                 /translation="QNLEWLDIIFPCFLLVFTDTLTPDTGPKTNIISILEG
FT                 DEIQEKNFSEPILEELVPRYIKLLVNGLKEEVKTDLIKKYLPPENFKEIVP
FT                 PKINPEVRVAVQDNTLKRDTRLSKIQEQIAAVISALVRFTSDLVKKGGEDN
FT                 IKQVEMSNDVLRLLCDVFHHESVSRRELLLLNLNKDLKETLQNTPISELLF
FT                 GKELENTIEAARKLEKSGEQLKVKRNKLSASMLATTSRQGNYRRPFARGVQ
FT                 QMGHRSQKRTPLQNSRPSSNPKRPRAHYRSQNRQHTGSVERRRHY"
FT   CDS           1538..3667
FT                 /product="DIRS-8_SiOr_2p"
FT                 /translation="AICFHVSHYFETGKLPSPVCKRGAADGPQKSKTHSIT
FT                 KQSAKQQPEEAQGTLSVSESSTHRQRREETPLLESGQESRSLKVSKKCGRL
FT                 LHFAYRWKILGFHKTVISYITGLKIPLVKKPLQRFIPLEPIRSQKECVIID
FT                 KMIKKSLLEGIFSLVKPCKNQYISNVFIVPKPDGSYRLIINLKAFNKFVAT
FT                 SHFKLENHKTVTQLITQNCFMTNIDLQDAYYLVPIHKSYKKYLRFQFNGDI
FT                 YEFNCLPFGLSCAPLIFTKILRPVISCLRKCGFLSVTYIDDFLLLGKTHEE
FT                 CAINTKETIFFLEHLGFIINYKKSTLIPNQICKFLGFQYNSVNMTVSLPQE
FT                 KQVRLQKLLERFAKTRICTIRVFSKFVGNLVSAAPAIKYSFLYTKLFEREK
FT                 IRALCRANNNYDAKMNISPHLMSDFYWWKKHIALSSNTIHNETFAVEIFSD
FT                 ASKSGWGAHCENKTTFGFWSDQEKKKHINELELLAAFFALRCFTRNLSNCF
FT                 VLCRIDNTTAISSINRFGSVRFSNLNKLARKIWHYCEKKQIFIFASYINSV
FT                 KNIHADRASRQLHSDTEWSLSKYAFSKIRKKFGDPKIDLFASRTNKKCNIF
FT                 ISWVKDPEAQGVDAFTFNWGEMNFYAFPPFSLILRVLQKIKKDKAEGIVVV
FT                 PRWCSQPWYPIFKSLLIGEPLIFKPNINLLSFSGAPHPLWKKLSLVAGRLS
FT                 GKRYYREECL"
FT   CDS           3583..4578
FT                 /product="DIRS-8_SiOr_3p"
FT                 /translation="RSPPPIMEKAFPGSREVVREALLQGRVPLEALDICLA
FT                 SITESTLKQYSGGLRLWWTFCMNKNSNPYNVLVEDVLEFLTIHFNAGATYG
FT                 TLNSFRSAISQIAGPNLGQDFRVKRFFKGIFGQRPPKARYENIWDPQIVLS
FT                 YVKTLETNTLPLETLSKKLAVLLALATGQRLQILALIKIGNISIQANRILI
FT                 KISDRVKTSSINKSQPLLILPFFNDPQLCVAETLKRYLSFTQELRNSCDSL
FT                 FITFKRPYKKASTSTISRWIKNILEKSGVDMSIFKPQSTRHASTSSAARAG
FT                 VSFDTIRLAAGWSKDSRTFANFYNRPVIDNDEFARVVLDS"
XX
SQ   Sequence 5142 BP; 1680 A; 896 C; 969 G; 1597 T; 0 other;
     aattatatta ctgttccgtc tcgtaaataa atgtcttgta gtacccccgc ttcccgctcc        60
     ggaccacaga tttttaaaga aagaagccta cttcccctag cacgtcactc tcggctctga       120
     ccttcggtat catccagtct tcgtttctgt gcacgccggg ccacacacgt gcggcgtaga       180
     aaatttattt tttaataatt tctcattcgt atcgattgtt tatcgcgaaa aatgtcaggc       240
     gaagggaaga aaagatcaag aagttcgggt aagacagatg tgaatggtgc tgagattaaa       300
     tctatgctta aatcagtgat gcgaagactg gatgcgattg aacacaaaca aaagcgtcgt       360
     cgttggtctt cgccagctta ttcgcctact tttagtgatt gtgaatacac aggaagcggt       420
     ggaagcaaca gcgagtttga ttatggcgac ggagaagagg tagatgagag tttatctgtt       480
     agtcaagatg atccacgaat cgaggatagt tttcagaaga atgatattat tcctgggggt       540
     actggtaagg aaaatttctt ttttatgaaa tattgttatt attattgttt cctggttttt       600
     ttcccttgat tttctgtgct tagagtggca catatttaac atagcatgtt aaaattttac       660
     ttgtgtctag agtgacataa gttcatgcgc ttaaagttgt ttacatgtac aacaactgtt       720
     cttacctaga gtggtaaagt attttaaggt tagcctgagt ctagagtgac tctaggattg       780
     tacttaccta gagtggtaaa gtcttaaaat tagcatgagt ctagagtgac ttatactacc       840
     ttaaaatggg tgcgaaaagt acctatcttt ttcgagtttt tccctagcaa aacctagagt       900
     ggttggatat tatatttcct tgttttttat tggtttttac agatacctta acaccagaca       960
     cagggccaaa aacaaacatc atttctattc ttgaaggaga cgagattcaa gagaagaact      1020
     tttctgaacc cattcttgag gagttagttc cacgttacat aaagcttttg gtaaatgggt      1080
     tgaaggagga ggtaaagaca gacctcatta agaaatatct cccccctgaa aattttaagg      1140
     agattgtgcc tcccaaaatt aacccagagg ttagggtagc tgtccaggat aacaccctta      1200
     aaagagacac aagattatca aaaatacaag aacaaatagc tgcggtcatt tcagccttag      1260
     ttcgatttac ctctgattta gttaaaaaag ggggggagga taatattaaa caggttgaaa      1320
     tgtctaatga cgttttgcgc ctgctttgtg atgtatttca tcacgagtca gtgtcaagaa      1380
     gagagctctt actactaaac ttgaataagg accttaaaga aaccttacag aatactccga      1440
     tttccgagtt attgtttggt aaagaactag aaaacaccat tgaagctgca agaaagctgg      1500
     agaagtcggg cgagcaacta aaggtgaaga gaaataagct atctgcttcc atgttagcca      1560
     ctacttcgag acagggaaac taccgtcgcc cgtttgcaag aggggtgcag cagatgggcc      1620
     acagaagtca aaaacgcact ccattacaaa acagtcggcc aagcagcaac ccgaagaggc      1680
     ccagggcaca ttatcggtct cagaatcgtc aacacaccgg cagcgtcgag aggagacgcc      1740
     attattagag tccggacaag agtcacggtc tttaaaggtt agtaaaaaat gtggtagact      1800
     actacatttt gcctatagat ggaagatcct aggttttcat aaaacggtta tttcatacat      1860
     aactggtctt aaaatccctc ttgttaaaaa acctttacaa aggtttatcc ctttagaacc      1920
     aatcagatca cagaaggaat gtgtcatcat tgataagatg attaaaaaat cgttattgga      1980
     agggattttc tctctagtaa aaccctgtaa aaatcaatat atatcgaacg tttttatagt      2040
     tcctaaacca gatggatctt atagactgat tattaattta aaagcattta ataagtttgt      2100
     agcgacctca catttcaaac tagaaaatca caaaactgtt actcaattaa ttacacaaaa      2160
     ctgctttatg acaaacatcg atttacaaga cgcctattat ttggtgccta tacataagtc      2220
     atataaaaaa tatctaagat ttcaatttaa tggcgacatt tacgaattta actgtttacc      2280
     gtttggtttg agttgtgccc ctttaatttt tacgaagatt ttacgaccag ttatctcttg      2340
     tcttagaaaa tgtggttttc tttccgttac ctatatagat gattttttac ttcttggaaa      2400
     aactcatgaa gaatgcgcca taaatacgaa agagactata tttttcctag agcatttagg      2460
     gtttattata aattataaaa aaagcacact tattcccaac caaatttgta aatttcttgg      2520
     ttttcaatac aattctgtta atatgactgt ttcattgcct caagagaaac aagttaggtt      2580
     acaaaaacta ctagaacgtt ttgctaaaac taggatttgt accataaggg ttttctcaaa      2640
     attcgttggc aatttggttt cagcagcgcc agctataaaa tatagttttt tgtacactaa      2700
     attgttcgaa cgagagaaga ttagggcttt atgtcgagca aataacaatt atgacgcaaa      2760
     aatgaatatt tctccacatt tgatgtctga tttttactgg tggaaaaaac atatagcttt      2820
     atctagtaat actattcaca atgaaacatt tgctgtagaa atcttttcag acgcctctaa      2880
     atctggttgg ggcgcgcatt gtgagaataa aaccactttt ggtttctggt cagatcagga      2940
     aaagaaaaaa catattaatg aactagaatt attagcagct ttctttgcat taagatgttt      3000
     taccagaaat ctatcaaact gttttgtgct atgcagaatt gataatacaa ctgcaatctc      3060
     ttctattaat agatttggta gcgtacgctt ttcaaattta aataaattag cccgaaaaat      3120
     atggcactac tgtgagaaaa aacaaatatt tatttttgcg tcatacatta attcagtaaa      3180
     aaatatacat gccgataggg cttccaggca gttacatagt gatactgaat ggtctctatc      3240
     gaaatatgct ttttctaaaa tccgtaaaaa atttggcgac ccaaaaattg acttatttgc      3300
     gagtcgcact aacaaaaaat gtaatatttt catatcttgg gttaaagacc cagaggctca      3360
     gggggtggat gcttttacct ttaactgggg agagatgaac ttttacgcat ttcccccttt      3420
     ttctttaata ttaagggtat tacaaaaaat taaaaaagac aaagctgagg gcattgttgt      3480
     cgtgcctaga tggtgttctc aaccttggta tcccatattt aaatccctat tgataggaga      3540
     gcccttaata ttcaaaccta atataaattt actttcattt agcggagccc cccacccatt      3600
     atggaaaaag ctttccctgg tagccgggag gttgtcaggg aagcgctact acagggaaga      3660
     gtgcctttag aggccttgga catatgttta gcctcaatca cagaatcgac cttaaaacag      3720
     tatagtgggg gtctacgctt atggtggacg ttttgtatga acaagaatag taatccatac      3780
     aatgtattag tcgaagatgt tctggagttt ttaactatac attttaatgc tggcgccact      3840
     tatgggaccc tcaattcgtt tagatccgcc atatctcaaa ttgcggggcc gaacttaggt      3900
     caagatttta gggtcaagcg ttttttcaag ggaatttttg gtcaaagacc acctaaggct      3960
     agatatgaga atatttggga tccgcaaata gtactttcct atgtaaagac acttgaaact      4020
     aatactcttc ccctagagac cttaagcaaa aaacttgcag ttttattggc gttggctacc      4080
     ggccaacgat tacaaatatt ggcccttatt aaaattggta acatttcaat ccaagctaac      4140
     agaatattaa taaaaatatc agaccgtgtt aaaacttcat caataaataa atctcagccc      4200
     ctcttaattt tgccattttt taatgatcct caattatgtg ttgccgagac acttaaaagg      4260
     tacctaagct ttacacaaga attgagaaat tcttgtgatt cactttttat cacatttaaa      4320
     agaccatata agaaggcttc tacatctact ataagccgat ggatcaaaaa catattagaa      4380
     aagagcgggg tggatatgtc aatatttaaa ccacaaagca caagacatgc ttcaacttct      4440
     tcggcagcaa gggctggggt cagttttgat accataagat tagcggcagg atggtctaag      4500
     gactccagaa cgtttgctaa tttttacaac cgtcctgtta ttgacaatga tgagtttgca      4560
     agagttgtat tagattcata aatgttagat ttaggcattc caaaaaaaaa aaaaaaaaat      4620
     gtcaagaaat ttaatttatc tttggaaagt tttgttcata ggttacaaag tttttgctct      4680
     ttatttgttt taagaaataa attttcttta gttctttggt tgttgcatta tgctttaaac      4740
     atctacaaga catttattta cgagacggaa cagtaatata ataataagat caaacgaact      4800
     taccttaagt gatgttcgat cttgattata ttactgttcc gtcgaagtaa ataaatccct      4860
     ccctacccaa taaaaaataa ataaatgaat aattaaaata gatacacata tagaatttta      4920
     aaattaatca ttaccctttt gcaacaacaa ctttaaaata actggatgat accgaaggtc      4980
     agagccgaga gtgacgtgct aggggaagta ggcttctttc tttaaaaatc tgtggtccgg      5040
     agcgggaagc gggggtacta caagacattt atttacttcg acggaacagt aatataatca      5100
     agatcgaaca tcacttaagg taagttcgtt tgatcttatt at                         5142
//
ID   DIRS_Nvi    repbase;    DNA;    INV; 5921 BP.
XX
AC   NW_001820493;
XX
DT   16-MAR-2009 (Rel. 14.03, Created)
DT   17-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DIRS-type family.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS_Nvi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5921
RA   Jurka J.;
RT   "DIRS families from Nasonia wasp.";
RL   Repbase Reports 9(3), 679-679 (2009).
XX
DR   EMBL/GenBank/DDBJ; NW_001820493; Positions    3325    9245.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1798..1917,2108..2770,3222..4451,4474..4929)
FT                 /product="DIRS_Nvi_1p"
FT                 /translation="MSDEKMTPTKRKNSFSSLQVMPENCCLIYIFKFQCLE
FT                 GPLKPDKFERRFKLQRPPPSTKHDVHTPSEGAEMTIQQSRAEQELQVEVDA
FT                 PVSKIGGRIRFFEQSWQKITNDPFIISCVRGYTIKFDYNVIQPVVPPEPHF
FT                 SKEENLACESSINILLEKGAVSKCKPCKKQFISTYFLRQKPNGDYRFILNL
FT                 KQLNKFIVASHFKMENVKTALKLLSKDSYMAAMYLQDGYLLVPINKKSRKF
FT                 LRFSYKNTCTNLTLCPSDFQQWWLNNIFLVKNYIRDNKYHLEIFTDASLTG
FT                 WGVFCAGEKVHGWWENGESDHINFLELQAAFNGLKCFAKNEGNCEILLIID
FT                 NTNAISYVNRMGGIKYPKLNNIVRDIWQWRESRNIFLYASYIKSKDNFEAD
FT                 TDSRRLPPETVWEIASWAFNMIIKSFGVPEIDLFASCLNAKCKKYITWKKD
FT                 PDSIEIDAFTIPWTNLKFSAFTLFSVILKVLRNIIIDNAEGIVVVPYWPTQ
FT                 SWFSLYKSLATTPFLYLGPNPKLLSSPYSKSHQLSQKLILVAAKLSCNHTR
FT                 EKRSRAETTLARYGNPVNKWWNYCREKNISLYEADTKDIIEFFTRQSEVVK
FT                 SYSKLNIYRAALSLIMNNRLGEMPEISRFFKGVANQKPKNAKYNEIWDPDR
FT                 VLTFLSILFSNDALSLENLTKKSRENAFIQTLSKIKLDNIKEMENEIKIRI
FT                 TDRIKTSNRVKEQPLLKIPFFTRQENICPAKTLKVYVEKTASLRTEKDKNL
FT                 ILTFKKPHHTATTQTISRWIKDTLKESGIDTSIYSAHSTRHASTSAAARAV
FT                 INIETIRKAAGCSQKSKVFA*"
XX
SQ   Sequence 5921 BP; 1960 A; 1167 C; 1156 G; 1638 T; 0 other;
     gatagaaacg agtcgtcatc acgatcatct ccctcatatg cggaaaaata taaatgaaaa        60
     atttcatttc gatattattc gatcgagata cgacgtgctt cacgcggccc atttccaata       120
     catatggacg tacgcgtgac gagtaacaac tctgcccaca gctgcacacg acggattgaa       180
     atactcagtg atataaaaaa aggaatatgc aatattgcga gcctcttcaa tttcgctatg       240
     tcctcgaccc taattacagt ctctgtatac cgccagtttc gctcaacggg ctaacgcgta       300
     agccttcccc gagttatacc agacgcgcaa attgtgtgta tgcaaccgcc gtctatggct       360
     atctgcatcc ggacgatcct cgatgtcgac cacgatgtag ccgcttctgt gtcgttcgcc       420
     aattcagagc gcgctgaatg aaggttttcg gttttcggtt gaagcttgtg cacgagatcg       480
     agtttggatt ttccctgcag gcggatgcgg ttgaaagctg tatacctcta tagtaggatg       540
     ttcgttaggg atcaaaggaa gagtcgacgg tttgcttttg aatttcgtgc cactggttgc       600
     tcgaattttt cacaccgtca gcactcgacg agcaggtgac ctgcttagat attttaattt       660
     tgccttttca cgtctgttta gaagggaacg aaaattgtac ttctctgcct cgtcctctag       720
     atcaaattgt agtagcgctc cactgagcgt tctaccacag gatttttaaa gcatgattta       780
     agaattcact tgtctcgctt gttgccatgg tattatatct ctgaatgtgc cattacgctt       840
     tcctgcgcgt tccaagctac aggcataacc ttatactcgc tcattgaatt tctttttcat       900
     caatatgagt tctcatcatc gaaaaaggaa tcggagtata gatcgaagag ataacgaaaa       960
     gtcgagctca ttccatcgtt cacggcgcca tacggtgcac tcacgcagca aaagtccgcc      1020
     gagaccaaca gcatcgtcag catatcgaca tcaacacgag cggagaaact gtaaacgtgc      1080
     acattcgggg caaagacgtg acagccaaca aggaggtaat gcatcagtgc atcgatacaa      1140
     aaagcctcga aggagcagtg cgcacaaaaa ttatccgtcc gaaaacgaca gtgagcgtcg      1200
     cccgagaggc tcgccgtatc gtagacgtat agtacctcca tcagcagctc gctttccagt      1260
     gaatattcat accggcgcag cagctcatat gaaagtcgca cctcgctaag ttactcacgc      1320
     tcccctaatc gaagtgtttc gagctgatag acatgctcag ccaccactag gaacgatagt      1380
     gagaggaaaa gagccgagag tcaaaaccac cacgacaagg ttaaggtaac cgatactgcg      1440
     agaacatcag gtgagtcttc tgctcctaat aaaagtcagc cagaagtaaa ctcggagttg      1500
     cttaatctct taggagagtc aatccaagaa ttaaacactg aacctcctat tcatgccgaa      1560
     gttgcaaaag tttggcagca aatttgccat aaaggttttg ctaagaggtc aaaagaatct      1620
     ttgtttcaaa aatatttaat cccggaaaat tgtgtatttc ttaaatcgcc aaagctcaat      1680
     tcggagatta aatcgggagt tggaaaatct atccaatgca gagaccaatt tcaagtagtt      1740
     acgcaaaatc agcttggctc agctctttca gcaatagcga aagttttaac aaagctgatg      1800
     tcggatgaaa aaatgacacc gacgaagcga aaaaattcat tttcgagtct acaagtgatg      1860
     ccggaaaatt gttgcctgat ttacattttc aaatttcaat gtctagaagg gcccttataa      1920
     atccagcttt gaagcaagta gcggtcaacg tagcagaaaa atccgaaatc aacgagtatc      1980
     tttacggcca gaatttctcg gagaaactta aaattgccaa ggaagtggag aaagtcggaa      2040
     gtggcctttc gaaacaagat cggtttgcga gaaaacctga tttttttggc tcaagaagct      2100
     cctatagaaa ccagacaaat tcgagaggcg atttaaacta cagaggcccc ctccatcgac      2160
     gaaacacgac gtacacacgc ccagcgaggg ggcagaaatg acaatccagc agtcgagggc      2220
     agaacaggaa cttcaggtgg aagtagatgc acctgtaagt aaaattggcg gtagaataag      2280
     attctttgaa caatcttggc agaaaattac gaatgatcct ttcattatct cttgcgtaag      2340
     aggttataca atcaaatttg attataacgt aattcagcct gtagtaccac cagaaccgca      2400
     tttctctaaa gaagaaaatt tagcgtgtga atcttcgata aatattttgt tagagaaagg      2460
     tgctgtatca aaatgcaaac cttgcaaaaa gcagtttatt tcgacttatt ttttgcgaca      2520
     aaaaccgaat ggagattata gatttatttt aaatctcaaa cagcttaata aatttatagt      2580
     cgcttcacat tttaaaatgg aaaatgttaa aactgcgcta aaacttttat ctaaagactc      2640
     gtatatggca gctatgtatt tgcaagacgg ttatttactc gtaccaatta ataaaaaatc      2700
     aaggaagttt ttaagatttt cgtacaaaaa tacttgtacg aatttaacgc tttgcccttc      2760
     ggactttcaa tagctcctta tattttcaca aaattgttaa aaccagttgt agagaaatta      2820
     cgattagaaa ataccatatt agtgatatat ctggatgaca ttttactgat agctagaaac      2880
     cgagaagatt gcttgaggaa tgtttgcatt actcgaaatt tattagaatc attaggtctc      2940
     ataattaata caaagaaaag acaattaata ccgagtaaac agtgtaaata tttgggtttt      3000
     attctggata gcaaacattt cagtatctat ttgactaatg aaaaacgcga aaaaattaaa      3060
     aatgcagttg acaaattata caatgggaaa tcatttaaaa tcagagaagt cgcaaaagtc      3120
     ataggtacgc ttgtatgagc gtgtcctgcc gttacatacg gttggctgta cactaagcga      3180
     ctagaacgag atacattttt agccctcaat aaaaataata acaatggtgg ctaaacaaca      3240
     tatttttagt taaaaattac attcgagaca acaagtatca tctagaaatc ttcactgacg      3300
     catctctcac aggatggggc gttttctgtg caggtgaaaa ggttcatggt tggtgggaga      3360
     atggtgaatc agaccatatc aattttttag agttacaagc tgcttttaat ggcctcaaat      3420
     gtttcgcgaa aaatgaagga aattgcgaaa ttctactcat aattgacaat actaatgcca      3480
     tttcttacgt gaatagaatg ggcggaataa aatatccaaa acttaacaat attgtacgag      3540
     atatttggca atggcgtgaa agtaggaata tttttttata cgcatcttat ataaaatcaa      3600
     aggataattt tgaagcagac acagactctc gtagattacc gccagaaact gtatgggaaa      3660
     tagcaagttg ggcatttaac atgatcataa aaagcttcgg tgttccagaa attgatctct      3720
     ttgcttcctg tttaaatgca aagtgtaaaa aatatattac ttggaaaaaa gatccagatt      3780
     ctatcgaaat tgacgcattc acaataccgt ggacaaattt gaaattttcc gcttttacgc      3840
     tattttctgt tattctcaaa gttctacgta acataataat agataacgca gaagggattg      3900
     tagttgtgcc atattggcca actcaatctt ggttttcgtt gtataaatcg ctagcaacga      3960
     caccttttct ctatctcggg cctaatccta aattactttc gtctccttac agcaaatcgc      4020
     atcaattgtc tcagaaactt atcctggttg ccgcgaaatt atcctgcaat catacacgcg      4080
     aaaagagatc tagagcagaa acaacattgg caagatatgg aaacccagtg aataaatggt      4140
     ggaattattg cagagagaaa aacatctcgt tatacgaagc cgatacaaag gatattatag      4200
     aattcttcac gaggcaatca gaagtcgtaa aatcgtacag taagcttaat atttacaggg      4260
     ctgcactttc gttgattatg aacaaccgtt tgggagaaat gccggaaata agtaggtttt      4320
     ttaagggcgt tgctaatcaa aaaccgaaaa atgctaaata taatgaaata tgggatccag      4380
     atagagtact gacatttctc tcaattttat tttcaaatga tgctttgtct cttgagaatt      4440
     taacgaaaaa atgagttaca cttttagctt tagtcacggg aaaacgcatt cattcagaca      4500
     ttgtcaaaaa taaaattaga taacataaaa gaaatggaaa acgagatcaa aattcgaatc      4560
     acggatagaa taaaaactag caaccgagta aaagaacaac ctttgttaaa aattccattt      4620
     tttactagac aagaaaatat ttgccctgca aaaactttaa aagtttacgt agaaaaaact      4680
     gcaagcctta ggacagaaaa ggataaaaat ttaatcctaa catttaaaaa gccacaccat      4740
     acagcgacaa cacaaacaat tagccgttgg attaaagata cgttaaaaga aagcggtata      4800
     gatacgagca tttattcggc acatagcacg cgtcatgcgt ctacctctgc agcagctcga      4860
     gccgttataa acatcgaaac tattcgcaaa gcagccggct gctcacaaaa atctaaagta      4920
     tttgcttaaa tcatgcttta aaaatcctgt ggtagaacgt tcagtggaac gctactacaa      4980
     tttgatctat tcggacgagg cagattgtac aattatgatc gagttttcac ttacaggtaa      5040
     gttcactcga tcgttcaatt ctcgacaccg gactgcgaag gattttaatt tgcaaagaag      5100
     cgaccctgtt gaaaatatat acctggatat ccaggtggat tttccatatg gataatctat      5160
     atcgattcat gtggattcca tatggattcc atgtggatat tccatatgga tatccacatg      5220
     gatatacgtc tagtttttga aaaagtcaaa acagttaaaa attttgtatg cgcctgttat      5280
     gtataggtta acaaccatta atggaagtac cattcggata ataacacctt aactagggtt      5340
     gtgagctcca aaatcttaat ttgtttagca ttacaaaaaa ttttaatttc tataaaataa      5400
     ttaaaaagtg aatattttgg agctcacaac cccagtttag gtgttatcat ccggatggta      5460
     cttccattaa tggatagatg aactatacat aactggcgca taaaaaattt ttaactgtct      5520
     tgacttttta ataaactaga cggatattca tgtggatatc catatggaat atccacatgg      5580
     aatcccacat aaatccatat ggaatccaca tgaatccata aagattatcc atatggaaaa      5640
     tccacctgga tatccatcag gtatatattt tcaacagggg atgaattccg cggattctcc      5700
     ctccgcgttg atagcttaat ggccgcagtg tcaagtccga agtatgcgcg ccgttccgaa      5760
     gggcctatca agggcctgca tcgagaaaaa tcggcccgca cctgcatgca catacatcag      5820
     aattcgaaaa atcgcaacgt cctcgtacgg ccgacccact tcctgcgctc gcgccgccta      5880
     taaaacgcgg cctcgtttgg aattcctcgc ctgcagccgc g                          5921
//
ID   DIVER2_I    repbase;    DNA;    INV; 4147 BP.
XX
AC   .
XX
DT   23-APR-2001 (Rel. 6.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   DIVER2_I is an internal portion of the DIVER2 retrovirus-like
DE   element - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   gag; Retrovirus; endonuclease; internal portion;
KW   nonautonomous LTR retrotransposon; RT; the BCDRP group;
KW   DIVER2_LTR; DIVER2_I.
XX
NM   DIVER2_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4147
RA   Kapitonov V.V. and Jurka J.;
RT   "DIVER2_I.";
RL   Direct Submission to Repbase Update (31-MAR-2001).
XX
DR   [1] (Consensus)
XX
CC   DIVER2_I is an internal portion of the DIVER2 endogenous
CC   retrovirus. LTR of DIVER2 is listed in Repbase Update as
CC   DIVER2_LTR. DIVER2 is an ancestral form of DIVER. There are a few
CC   copies of DIVER2 proviral sequences flanked by both LTRs. There
CC   is 2-6% divergence between the flanking retroviruses, therefore
CC   DIVER2 has been integrated into the D.melanogaster genome about 2
CC   Myr ago. Target site duplication is 5 bp-long. DIVER_I internal
CC   sequence preserves remnants of ~1200-aa polyprotein (nucleotide
CC   position 436-4147) similar to the ones encoded by retroviruses
CC   from the BCDRP group. The polyprotein is composed of gag
CC   (positions 436-1583), reverse transcriptase (positions 1590-3400)
CC   and integrase (positions 3406-3846).
XX
FH   Key           Location/Qualifiers
FT   CDS           699..1691
FT                 /product="DIVER2_I_1p"
FT                 /translation="YRNGSVASLRELSDKFNAHIRALKGLGTTEQIAGCII
FT                 VQVLLQKLDAASQAKWEESLEDPIFANLIPSWKSMAAFLEQRCRTMEAADC
FT                 AMATYAPGVQVGRNRSTLVATTQNSLGCMLCHSAEHAIYYCPQFTDLAPVD
FT                 RLREANRLSLCLNCLKAGHQLRQCSSSRQRTCGIRHHTLLHLGGPPSSQPH
FT                 VPVSSSSHTEPSAPLSTSSTLIAQDLGSDLVLLAIATVLVQNRSGLFVPCR
FT                 ALLDSGSQLHLVTSRFANQLQLKRSRSSGSVTGIGDSNFATVSVGHFGFLN
FT                 EHNSSYRSQYHGIARQVLMWTLGTGRFQKTCSSPTRNFI"
FT   CDS           2779..4146
FT                 /product="DIVER2_I_2p"
FT                 /translation="CCGWCSARSYGRTLQSLKTLGRVSSSSPISSLSPFLD
FT                 QFGLLRVGGRLWNSSLDFYGRHPKILPRSHSVTLAIISHYHEINLHAGPRA
FT                 LLGAIRSQYWPIGGRKTVTKAVNRCIRCFRIMPRLIEHIMADLPKERLEGS
FT                 HAFEVAGIDFCGPFFHKSDTRNKPAVKCYVCVFICFATKAVHLELIKDLST
FT                 VAFLCGLKRFICTRRKPKQIWSDNATNFVGAKNKLLELRRLFLSSEHQGSV
FT                 QNFCLSETIDWRFIPPRSPHFGGLWEAAVKTAKHHFYRAVGTAVLTFDELR
FT                 TLVCHISAVINSRPLVPISENPADLDVLTPAHFLNGGPPSSFDEPDITGLN
FT                 YNRLDSWQRISFLQQIFWSRWKEEYLTLLQQRSKWRTPKPGVAVDNVVLVK
FT                 DENLPPMRWPLARVMQLIPGRDGVARVAELRTASGVIRRAVNKLCLLPLED
FT                 SVGSQASNGGR"
XX
SQ   Sequence 4147 BP; 954 A; 1045 C; 1053 G; 1095 T; 0 other;
     ttggtgaccc cgacgtgata gtgttcattt gcatgcatta attaatgcac ttatcccgtt        60
     aataaataaa tataaataca ttaaatcgca atcggttgga caagtgagtg gtgatttcgg       120
     tgttagtggc tgtgtttgag cgagctagca ttacatatgt acatacatac attgctacat       180
     atatcgttac gtgcattgac tccgctggca ttttcggcat atattttgtg ctcatcttcc       240
     cgctgaaccg aattaaaggc gatttgttgc catgcccgct gaaggtaaca aaaacagggt       300
     gaccttttta aagcgcaaag ccaatgcgct gttcagcagg ttgcagaggc tacaaacgtc       360
     gctggctaat gagacgctaa gcggatacga tgaacccact cttacggtga ggctggagca       420
     ctttgcaaaa ctgcaaagtt tggcggaggc tacgcaaact gggcggattt ttactccgtg       480
     ttcacgagca taatcgacag ccatccggac ctctccaaca ttgagaaatt ttaacatctg       540
     cggtcatgtt tgagggattc ggcgctggaa actatccgat cattggatat ttcaaacagc       600
     aattacgaag cggctttaga gttgtttcaa aaaaggtttg atgaatcggc gtctcgtttt       660
     tcaggcgcac atcaccgaga ttctgggttc aaaggtagta ccggaatggt tcagtggcat       720
     cgcttcggga attgtcggac aagtttaacg ctcacattcg tgcgttgaag ggtttgggca       780
     ccactgagca aatcgctggc tgcatcatag tgcaagtgct gctgcaaaag ctggatgcgg       840
     cgagccaagc taagtgggag gagagcttgg aggatccgat ctttgccaac cttattccgt       900
     cgtggaaatc gatggctgca ttcctggagc agcgatgtag gactatggag gccgcggatt       960
     gcgccatggc aacctatgcg ccaggcgttc aggtgggcag aaatcgttcg acgctagttg      1020
     ctaccaccca aaattctctt ggttgcatgc tttgccatag tgcagagcat gccatatatt      1080
     attgcccgca atttacagac ttagcgccag tagatcgtct gcgcgaggca aacagactat      1140
     cactttgcct aaattgccta aaggcaggtc atcagctacg gcaatgcagc tcgagccgcc      1200
     aacgcacctg tggaatcagg catcatacgc tgctccatct aggtggtccg ccttcctcgc      1260
     agccacatgt tccggtgtct tcaagctccc acactgagcc ttctgcccct ctttcgactt      1320
     cttctactct aattgcccag gatctcggta gtgaccttgt gctgctagcc attgcaaccg      1380
     ttctagtgca gaatcggtcg ggactgttcg ttccctgcag ggccttgtta gattctggct      1440
     ctcaactgca cttggtcacc tctcggtttg caaatcaact gcaacttaag aggtcaaggt      1500
     cgtccggctc cgtcactgga atcggggatt ccaatttcgc gactgtttcg gtcggtcact      1560
     tcggatttct caacgagcat aacagcagtt atcgctccca atatcacggg atcgccagac      1620
     aagttttaat gtggacattg gggactggaa gattccagaa aacctgcagc tcgccgaccc      1680
     ggaatttcat atagctcagc gtgttgacct gttaatagga gctagcttgt tttatgaact      1740
     gctgtgccgt aggtcagata aggttgttgc ccggactgtc cctgcttcaa aaaactcgtc      1800
     tgggctgggt tgtgtctgga ggctgcgcgc gcccttgcgg gtagcgcctt aatagcttca      1860
     cgcgttcctt cttcagccag caaggaaaac agcatttgat gttgaacttg attcacttct      1920
     gcagcgctct tgggaggtag aaaagtgtcc cggcccaata gttcaagcca ctaaggagga      1980
     gttagattgc gaggcccact ttggttataa attacacccg actgccagct ggcgattact      2040
     cggtacggtt gccgctaaaa ctccatttgg agtctttagg agattcctat cctcaggctt      2100
     tgcggagatt ctggtcgctg gaaaggaagc ttacaaagca ccctggcttg agggttaaat      2160
     attcggcgtt catgaaggaa tatcgtgatc cggaacatat gtcgcctgtg cctgcctccg      2220
     aggtcagctc gtcccgatat ttttttacca catcactgcg tcatgaagga ggatagcact      2280
     accaccaagc ttcgcgttgt ctttgacgga tcagctgcca cttccactgc ttactcgctt      2340
     aacgatgtgt taatggctag cccggttatc cagcccaagc tatttcacat cctaattcga      2400
     tttccgctca cacccagttg ccattcggga gctgacagat gtcacggctt ggcgttatgt      2460
     tccaacagcg ttaaatccgg ctgacatctt atccagagga tccctgccgt ctgagcttag      2520
     cgaatcgtca ctcacccgcc tatcttacgg agcctgaaag agattggcca aaagctgttt      2580
     gtcctgacaa accggtgctt gagcttcgtc gaagtgtgtt cgtcgtaaag tcgccgtacg      2640
     tggatgtaat tgctagctcc aaatttgcaa attcttaccc ctcactgcaa cgagtgtttg      2700
     catacattta caaattttgt aatggaattc gtcatcctgg gctcaccgtc gcacacattc      2760
     aagagggtac tcatatgatg ctgcggttgg tgcagcgcgc gcagttatgg gaggaccctg      2820
     cagtccctaa aaacgctggg aagagtttcc tcgtctagtc ccatatcctc gctctcgccg      2880
     ttcctggatc aatttggact tcttagagta ggcggtcgcc tctggaattc gtcattggac      2940
     ttttatggcc gccacccgaa aatccttcca aggtcccatt cggtgactct ggcaattatt      3000
     tcgcattacc atgaaatcaa tcttcatgcc ggacctcgag ctcttctggg tgcaattcga      3060
     tcacaatatt ggcctattgg ggggaggaag acggttacca aggccgtgaa caggtgcatc      3120
     agatgttttc ggattatgcc gcggctgata gagcacataa tggcggacct tcccaaggag      3180
     cgcttggaag gatctcacgc tttcgaggtt gctggtatag acttctgtgg acccttcttt      3240
     cacaagtcgg atactcgcaa caagcccgcg gttaaatgct acgtctgcgt atttatatgc      3300
     tttgcaacca aggcagtgca cctggagctg atcaaggatc tctcgacagt tgcgtttctg      3360
     tgcggactca agaggttcat atgcacccgg cggaagccga agcaaatttg gtcagacaac      3420
     gccaccaact ttgtcggcgc caaaaataaa cttctggaac ttcgaaggtt atttctcagc      3480
     agcgagcatc aaggctccgt tcagaatttt tgcctttcgg agacgattga ctggcggttc      3540
     atccctccac ggtcgcccca tttcggtgga ctttgggaag cagcggtgaa aacggccaaa      3600
     catcatttct accgcgctgt gggtacggcg gttctgacct tcgacgagct gaggacgctg      3660
     gtgtgccaca tctcggcagt tattaactcc agacctttag ttcccatttc agagaaccct      3720
     gccgatctgg acgtcctcac tccggcgcat tttctcaatg gtggtccgcc ttcgtcgttt      3780
     gacgagccag atataacggg cctaaactat aatcggcttg actcttggca gcgcatctcc      3840
     tttcttcagc aaatattttg gtcacgatgg aaggaagagt acttgacgtt gctccagcag      3900
     cgctccaagt ggcgcacccc aaagcctggc gtagccgtgg acaacgtcgt tcttgttaag      3960
     gacgagaatc tacccccaat gagatggcct ttggcgagag tcatgcagtt gattcctggc      4020
     agagacggcg tcgctcgagt tgcagaattg aggaccgcgt ctggagtaat aaggcgggca      4080
     gtgaacaagc tgtgtctgct tccccttgag gactctgttg gaagccaagc ttccaacggg      4140
     gggagga                                                                4147
//
ID   DIVER2_LTR  repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   23-APR-2001 (Rel. 6.03, Created)
DT   23-APR-2001 (Rel. 6.03, Last updated, Version 1)
XX
DE   DIVER2_LTR is a long terminal repeat of the DIVER2
DE   retrovirus-like element - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   DIVER2_I; DIVER2_LTR; LTR; nonautonomous LTR retrotransposon;
KW   Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-385
RA   Kapitonov V.V. and Jurka J.;
RT   "DIVER2_LTR.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
DR   [1] (Consensus)
XX
CC   DIVER2_LTR is a long terminal repeat of the DIVER2 endogenous
CC   retrovirus, its internal portion is listed in Repbase Update
CC   as DIVER2_I. There are ~10 copies of DIVER2_LTR present in the
CC   genome, they are over 90% identical with each other.
XX
SQ   Sequence 385 BP; 99 A; 91 C; 75 G; 120 T; 0 other;
     tgttgggtca tgcagccgcc aaaactgtgc agtagactaa tctcatactc tttaatattg        60
     taagccgaag tagtcagtgg tagcagttgc gatgcccata gtgcaaaccg ctgttctcgc       120
     acgcatttat ctgtacggcg ctcattcctt gttctttttg ttatctacct acgttaagct       180
     tgggcgctgc atttcggctg tctgtcccgc caattgccac ttcttcgtct gtcggaagag       240
     actaaacttg tgcattcgat atagctcttt gtcggcccta gctgctgtaa acaattcgca       300
     aaataaacag tatcgtaaaa taaacaaact ttcttcggct atttattatt cgcaacagct       360
     attgaaaaag ctcaatagct aaaca                                             385
//
ID   DIVER_I     repbase;    DNA;    INV; 5643 BP.
XX
AC   .
XX
DT   09-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   DIVER_I is an internal portion of DIVER retrovirus-like element -
DE   a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; ORF1; gag;
KW   Retrovirus; endonuclease; internal portion; RT; DIVER_I;
KW   DIVER_LTR.
XX
NM   DIVER_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5643
RA   Kapitonov V.V. and Jurka J.;
RT   "DIVER_I.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [1] (Consensus)
XX
CC   LTR of DIVER retrotransposon is listed in Repbase Update as
CC   DIVER_LTR. DIVER can be an active retrovirus since some of
CC   its copies are identical. There are 5-10 copies of the DIVER
CC   provirus in the genome. Target site duplication is 5 bp-long.
CC   DIVER_I internal sequence encodes 1747 aa-long polyprotein
CC   (nucleotide position 332-5572) similar to the ones encoded by
CC   BEL and ROO retroviruses.
CC   These retroviruses form separate BCDPR superfamily
CC   (an abbreviation of Bel-Catch-Diver-Pao-Roo retroviruses).
CC   Members of this superfamily are present in vertebrates
CC   (fish retrovirus CATCH).
CC   DIVER's polyprotein contains gag-like zinc-finger domain
CC   (aa position 320-410); reverse transcriptase domain (aa
CC   position 810-910) and endonuclease/integrase domain (1350-1620).
CC   All these domain are significantly similar to the domains encoded
CC   by different mammalian retroviruses.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..5572
FT                 /product="DIVER_I_1p"
FT                 /translation="MSKFDQLVRVQTDRIESLKRLFSNVKKDSSARKTEIY
FT                 FEKRLNQIDEFNKEFHQAHHTLICMADYEESVYKQQNTISQFEDLGMEVYC
FT                 FVAEEKKRIYPGTVTHNESANSTITTHVEEVRIPLPKLPVPKFSGNCADWP
FT                 SFHDAFLRLIHNNERLDKIQRFHFLKEALPVGLDNDIRQIALTEANYEVAW
FT                 TTLLQRYNNPRIVFASHMNMLYNLPNLSKEKSADIRSMVSTVNVCIAACNT
FT                 VKAPLQGGDFWLTHYLTTKLPKDTHTAWEHHLGSKIDVPSYKDLQQFLNDR
FT                 LVTLDAIESRNACSGMKQSNETSDGTKRVRVHSAHTRSGASASACYHCGNL
FT                 HILRRCPQFLSMDCYQRKEVASKAKLCLNCLGKSHTQASCPSNKNCLHCGQ
FT                 RHHTMLHFPATQPTLIPSSTSCQGSAASSDAKPTLQCMSTTTSSKTHRKVL
FT                 LATARVVLSNTQTGCQATVNALLDQGSEATIISEHAVQSLQLSRSTTRTSI
FT                 TGVGQDSGRRCKFIVSCSVQTATNPNFSLKVDDAYVLNTLTSHMPSQSFPA
FT                 GNWSHIHGLMLADPYYYRSKRIDIIFGADLMAQLLLPGTKIGLPNEPIAQN
FT                 TQLGWVLLGNVGNTHITRHIRCNHAIINSEELLKVFCEVESVPERPKLSKE
FT                 DQWCESFFKQTHQRQPDGSYQVRLPFKRNFDPSMTLGKSHQIALNRYLQLE
FT                 RRLQRDPDKWIRYCKGIEEYFQLGQITLAETSENSTITTDSYGRHVASCVL
FT                 PHHAVFKEESLTTKQRIVFDASARTSNGRSLNDVLCVGPTLQNDLPAVLLN
FT                 WRQYQFVFTADIQRMYRCINVHPDDTHYQRILWRPADGVIKQHCLTTVTFG
FT                 TASAPYTAIRVIHQIAEDTQTKYPMASNVLKNEIYVDDILSGDHSQEAAIR
FT                 KSLQTMLALKSSGMELRKWASNDQDLMATIPLEHRCKQTSLSWDNADTIKT
FT                 LGMYWLPKQDCFTYKLLANTPAGITKREILSTIARLFDPLGLIAPVVISAK
FT                 IILKEITLAKQYREDGSSTSLDWDEPVPNTIAVKWQQFRQQLMKVKTIKIP
FT                 RSVKFTPLFSSEIQLHTFCDGSSSAYAAAVYARTQQSDGTFYTTLIVAKSK
FT                 ISPTKPLTIPRTELCGAVLATKLLKWVLENNRWTNAHISTFYCTDATIVLH
FT                 WIKGDITRWKTFVANRVSYILDHTSAAQWHHIDTSENPADCATRGLPPSQI
FT                 PDIWWHGPSWLCKPHNIWPNTQSQLLNPEERDLEAKSIKIRAFTTLSDTKD
FT                 SIIDRFSSYTKLLRVTAYMLRFCHNAHARAQRSHGSLSPDELDEALCCIAR
FT                 LAQSDTFHADIQALKRNKPLPPRSTLSNLTPFLDNNILRIRGRLKHSNLSF
FT                 SRKHPIILPHCHLFTDLVIQHSHQLTLHGGAQLTLAHIRYKFWIPRGRQAV
FT                 RRIIRKCVTCFKVAPVVAKQLMGDLPLHRVNPPTRPFITTGVDYTGAIELQ
FT                 AARVRGSTTYKGYVAIFICLATKAVHLEAVTGLSTEHFLQAFTRFTGRRGQ
FT                 VQHMYSDNGTNFVGASTSLNQPITCKAALNESTCQHGTRWHFTPPYSPNFG
FT                 GIWEANVKAMKHHLKRIVGSHKQTYEELTTVLIRIEACLNSRPLCPLTADP
FT                 DDLEVLTPAHFLIGDALLAPPQGRPNNKPLRELFLAQQHMTRQFWSQWSRD
FT                 WLSHLQTRPKWCQIKDNLSINDLVIIKDDNLPPAKWTIGRVVELHPGSDSL
FT                 VRVVTLKTKSGIQKRSITKLCPLPIST"
XX
SQ   Sequence 5643 BP; 1716 A; 1430 C; 1149 G; 1348 T; 0 other;
     ttggtggccc atgaggggaa ccttgctcat aagaatcata attaataatt gctaaaagct        60
     gtttggcaat tttatcttcg tggtcggctt catccagata aatcaccgtg cctacgtttt       120
     ctatcgcgct cgctctcatc acgacagagc agtatacgca aacattcgcg ctcgctctca       180
     tcacgacaga gctaagtccc gttgcccttc gattccgtta gagttgccgg aatctctgcc       240
     aactcaaaaa aacaagacgt caaagaagaa caccgataac atacgagcat ttgtgcatat       300
     tacatacagt ggagcaacgt cagtataaac aatgtcgaaa tttgatcaac tggtgcgagt       360
     tcaaactgac cgcattgagt ctttgaagcg cttgttcagt aatgtgaaaa aagactcgag       420
     tgcgcggaaa acggaaatat atttcgaaaa acgtttgaat caaatcgacg agtttaacaa       480
     agaatttcat caggcgcatc acacacttat atgcatggca gactacgaag aaagtgtgta       540
     taagcaacaa aatacaatca gccaattcga agacctgggc atggaagttt actgtttcgt       600
     ggccgaagaa aagaaacgaa tttatccagg cacagtgacg cacaacgaat cagctaactc       660
     tacaataaca acacatgtag aggaagtacg gataccactg ccaaaattac cagttccgaa       720
     attctctggc aactgcgcgg actggccaag ttttcatgat gcatttttac gcttaattca       780
     caataatgag cgtctggata agattcaaag gttccatttt ttaaaggaag cattaccagt       840
     aggcctggac aacgacattc gccaaatcgc tttaactgaa gcaaactatg aagtcgcttg       900
     gaccacactt ctacaacgat ataacaaccc acgaattgtg ttcgccagcc acatgaacat       960
     gctctacaac ttaccgaatc tttcgaaaga aaaatctgct gacatacggt ctatggttag      1020
     tacagtcaac gtctgcattg ccgcttgcaa taccgtcaag gcgccactac agggaggaga      1080
     tttttggttg actcattatc taacaaccaa actacccaaa gacactcaca cagcttggga      1140
     gcatcatctg ggcagcaaga ttgacgttcc ttcatacaaa gatctgcaac agttcctcaa      1200
     tgatcgactt gttacgttag acgctattga aagccgtaac gcgtgcagcg gcatgaaaca      1260
     gtcaaatgaa acttcagacg gtactaaacg cgtgcgtgtg cacagcgccc acaccaggtc      1320
     gggtgcttcc gcgtccgctt gctatcattg tggcaactta cacatacttc gaagatgtcc      1380
     gcaatttctt tcaatggatt gctaccaacg gaaggaagtg gccagcaagg caaaattgtg      1440
     tctcaattgc ctgggaaaat cgcacacaca agcaagctgc cccagcaaca agaattgtct      1500
     tcattgtggt caacgtcatc acacgatgtt acattttcca gcaacacagc caacgctgat      1560
     accctcctcg acatcatgcc aaggttcagc agccagttca gatgccaagc cgactctaca      1620
     gtgcatgtca actacaactt catctaagac tcatcgaaag gtactactag caacagctcg      1680
     ggttgtactc agtaacacac agacaggatg ccaggccacg gtaaacgcgc ttcttgacca      1740
     aggatcggaa gcaactatca tttcggagca tgctgtacag tctctccagc tctcccgaag      1800
     cacaactcgc acttcaatca ccggagtcgg tcaagattca ggacgacgct gcaaattcat      1860
     cgtaagttgt tcggtgcaaa cagcaactaa cccaaatttc tcgttaaagg tcgacgatgc      1920
     ttatgttttg aacacgttga catcacacat gccaagtcaa agttttccag caggaaactg      1980
     gagtcatatc catggtctca tgctcgcaga cccctattat tatagatcca agcgaatcga      2040
     tatcattttt ggagccgacc ttatggcaca actcttgtta cctggaacta agattggctt      2100
     gccaaacgaa cccatagcgc agaacactca actcggatgg gttctgttag gcaatgttgg      2160
     caacacgcat attacacgcc acattcgatg taatcatgcc ataataaact ccgaagagct      2220
     gcttaaggta ttttgcgagg tagaatcagt tccagaacgc ccaaagctct ccaaagaaga      2280
     tcaatggtgc gagtctttct ttaagcagac ccatcaacgt caaccagacg gcagttatca      2340
     agtccgtttg ccattcaaga ggaactttga ccccagtatg acgctcggaa aatctcatca      2400
     gatcgccctg aacagatatc ttcaactcga aaggcgcctt caaagggacc cagacaaatg      2460
     gatcagatac tgcaaaggaa ttgaagaata ttttcaacta ggtcaaatca cgttggcaga      2520
     gacgagcgaa aactcaacca taaccacgga ttcctacggt cggcatgttg catcatgcgt      2580
     gctaccacat catgcagttt tcaaagaaga aagcctcacc acaaaacaac gtatcgtttt      2640
     tgacgcatcg gcccggacct caaatggcag atcgttaaac gatgtactat gtgtaggtcc      2700
     cacgctgcaa aatgatctgc cagccgttct cttgaattgg agacaatatc agtttgtttt      2760
     cactgccgat atacaacgaa tgtatcgctg tatcaatgtc caccctgatg acacccatta      2820
     ccagaggatt ttatggcggc cggcggatgg agtcatcaaa cagcattgct taactaccgt      2880
     cacgtttgga acagcgtctg caccttatac agctataaga gtcatccatc aaatagctga      2940
     agacacacag acaaaatatc ctatggcatc caacgttctc aaaaatgaga tatatgtcga      3000
     cgacattctc tcaggcgatc attcacaaga ggcagcaata cggaaaagtt tgcaaactat      3060
     gctagcttta aaatcctctg gcatggagct acgaaaatgg gctagtaatg accaggatct      3120
     gatggcaacg atacctctcg agcatcgatg caagcagaca tccctcagtt gggacaatgc      3180
     ggacaccatc aaaacactgg gtatgtactg gttgcccaag caagattgct tcacttataa      3240
     attactagca aatactccag ccggtataac aaaacgagaa atcctatcga ccatagcacg      3300
     tttatttgat cctcttggat taatcgctcc agttgtaatt tcagcaaaga ttatattgaa      3360
     agaaatcaca ctagcgaagc aatatcgcga ggacggatcg agtacctcac tggattggga      3420
     tgagccagtt cccaacacca ttgccgtcaa atggcaacaa tttcgacagc aactaatgaa      3480
     ggttaagacg atcaaaatac cacgcagcgt caaatttacg ccactattta gtagtgagat      3540
     acaactgcac accttttgcg atggatcctc cagtgcttac gcagcagcag tgtatgcacg      3600
     cacccaacag tctgatggga ctttctatac aacgctcatc gtcgcaaaat caaaaatttc      3660
     gccaaccaag ccgttaacaa taccgcgcac tgagctatgc ggtgcagtat tagctaccaa      3720
     actcctcaaa tgggtgctgg agaataaccg atggaccaat gcacatatat ctacctttta      3780
     ctgcaccgat gctaccattg ttctgcactg gattaaagga gacattacta ggtggaaaac      3840
     gtttgtagcc aaccgagtgt cttacattct cgaccacacc tcagcggctc agtggcacca      3900
     catagacaca tcggaaaacc cagcagattg cgcaaccaga ggcttaccac cgagccaaat      3960
     acctgatatt tggtggcatg gcccatcctg gctatgcaaa ccacacaata tttggccaaa      4020
     cacgcaatca caattgctca atccagaaga acgggatctg gaggccaaat ccataaaaat      4080
     tagagccttc actaccttgt cagacacaaa ggattctatt attgaccgat tctcgtcgta      4140
     tacaaaactg ctacgtgtca cggcatacat gttacgattc tgccacaatg ctcatgctcg      4200
     agcacaacga agtcacggat cactctctcc tgacgagctg gatgaggccc tgtgctgcat      4260
     agctcgcctt gcacaatccg atacatttca cgccgacatc caagcgctta aaaggaacaa      4320
     gccgttacca ccccgtagca cactttcaaa tcttacaccg tttcttgaca acaatatctt      4380
     gaggattcgt ggccgtctca agcattcaaa tctctctttt tctcgaaaac atccaattat      4440
     attacctcat tgtcacctat ttacagattt ggtaattcaa cactctcatc agctcactct      4500
     acatggcggc gctcaattaa cactggctca catacgctac aaattctgga ttcccagagg      4560
     cagacaagca gtcaggcgaa tcatccggaa atgcgtcaca tgttttaagg tagctccagt      4620
     cgtagcgaag caattgatgg gtgacttgcc attacatcga gtcaaccccc caactcgtcc      4680
     gttcattaca acaggagttg actacactgg tgcgattgaa cttcaagccg cgcgtgtacg      4740
     aggatcaacc acctacaaag gctatgtagc catttttata tgcttagcaa ccaaggcggt      4800
     ccacttggaa gccgtcactg gactttcaac agagcacttc ctgcaagcat ttacgcgatt      4860
     caccggacgt cgaggacaag ttcaacatat gtatagtgat aacggcacaa attttgttgg      4920
     cgcgagtaca tcgcttaacc agcccatcac ttgcaaggca gccctaaacg aatcgacatg      4980
     tcaacatggg acaaggtggc atttcacacc tccatattct cccaattttg gtggcatctg      5040
     ggaggcaaac gtgaaagcaa tgaagcatca tcttaaacgg atcgtcggca gccacaagca      5100
     gacgtatgag gagcttacta cagttttgat caggattgaa gcatgtttga actcacgtcc      5160
     actttgcccg ctaaccgccg accctgacga tttagaagta ctaactccag cacatttctt      5220
     aattggtgac gcactactgg caccgccaca aggtcggccg aataataagc ctttgcgtga      5280
     actatttctc gcacaacaac acatgacgcg acaattctgg tctcaatggt ctcgtgattg      5340
     gttatcacac ttgcaaactc ggccaaagtg gtgccaaatc aaagataatc ttagcatcaa      5400
     cgacttagtc attataaagg atgataatct accaccagct aaatggacta taggccgagt      5460
     cgtcgaactg caccctggat cggactcgct agtcagagtg gttacattaa agacgaaatc      5520
     tggcattcaa aagaggtcaa tcacaaagct ttgtccactt ccgatttcaa cataattatg      5580
     atcaacacac ggatcaagaa tcacaaggag ccttcatgct ggaccacgca ttggcgggcg      5640
     gca                                                                    5643
//
ID   DIVER_LTR   repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   09-JUL-1999 (Rel. 4.06, Created)
DT   05-MAR-2011 (Rel. 4.06, Last updated, Version 2)
XX
DE   DIVER_LTR is a long terminal repeat from DIVER retrovirus-like
DE   element - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   BCDR superfamily; DIVER_I; DIVER_LTR.
XX
NM   DIVER_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-224
RA   Kapitonov V.V. and Jurka J.;
RT   "DIVER_LTR.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [1] (Consensus)
XX
CC   DIVER_LTR is a consensus sequence of a long terminal repeat
CC   from DIVER retrovirus. DIVER's internal sequence is deposited
CC   in Repbase Update as DIVER_I.
CC   There are about 10-20 almost identical copies of DIVER_LTR
CC   in the D.melanogaster genome.
XX
SQ   Sequence 224 BP; 65 A; 36 C; 44 G; 79 T; 0 other;
     tgtacggatt atgagcggag tcacccggtg cttcagctgt cttaacagcg gattaacatt        60
     ttatatatcg atgctaattg aactgaactg tattctttct ttcgctcttg taattttgcg       120
     gtcatagcga tcagacgtga tttttgtata tgaagaaata aatgaagtta aatagtgtat       180
     atatgattct tatttgcgaa ccccattaca atgatgtcaa agca                        224
//
ID   DM1731_I    repbase;    DNA;    INV; 3977 BP.
XX
AC   X07656;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   05-MAR-2011 (Rel. 12.07, Last updated, Version 3)
XX
DE   Drosophila melanogaster retrotransposon 1731 sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; LTR; gag;
KW   retrotransposon; internal portion; gene; DM1731; DM1731_LTR;
KW   DM1731_I.
XX
NM   DM1731; DM1731_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3977
RA   Fourcade F.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (16-MAY-1988). Fourcade
RL   F., VACNRS 1135 , Universite P. Et M. Curie Bat. A. 5 etage, 7
RL   Quai St. Bernard, 75005 Paris, France.
XX
RN   [2]
RP   1-3977
RA   Fourcade-Peronnet F., d'Auriol L., Becker J., Galibert F.
RA   and Best-Belpomme M.;
RT   "Primary structure and functional organization of Drosophila 1731
RT   retrotransposon.";
RL   Nucleic Acids Res 16(13), 6113-6125 (1988).
XX
RN   [3]
RP   1-3977
RA   Ziarczyk P. and Best-Belpomme M.;
RT   "A short 5' region of the long terminal repeat is required for
RT   regulation by hormone and heat shock of Drosophila
RT   retrotransposon.";
RL   Nucleic Acids Res 19(20), 5689-5693 (1991).
XX
DR   GenBank; X07656; Positions     337    4313.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..913
FT                 /product="DM1731_I_1p"
FT                 /note="gag."
FT                 /translation="MSNLYQIDKLEDGSYETWSIQMRSVLVHACLWKVVSG
FT                 ESVKPEVDTGGAWQSQDEKALATIILSVKSSQLGYVKGCLTAAEAWKVLQD
FT                 VHQPKGPLRTVMLYKKLLSKRLLEGQSISSHIKEFKEIFDALDAVEIGITE
FT                 KLRSVVLLSSLPESFENFVVAIETRDDVPLFDALCIKLIEEDTRRGGAEQQ
FT                 REKQTESAKAFTAVHKPQAPAREARPSAKKRKDVVCYNCGERRHFKANCRR
FT                 EKVNKESATQEQCSLLNALDSGGFWQNTVVSR"
FT   CDS           867..3812
FT                 /product="DM1731_I_2p"
FT                 /note="pol."
FT                 /translation="MRWIVVVFGKTQWCLDSGATSHMCCDRSVFTEFEEHT
FT                 EKISLAGNGFLLAKGIGTVKLKTDLCTLVLNNVLFVPDLNGNFMSVSRAAQ
FT                 YKCFVNFGPHYADVIQEGERILRVMRAGNLYMFQGKHNSCFAAVDADGSLW
FT                 HKRNGHLNTSSLQEMVRKKMVYGVEKVVFKPDAVCKTCMLAKIHVQPFPKT
FT                 TRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDDKSRRIFVYFLRKKD
FT                 EVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLT
FT                 IPHTPQQNGVAERANRTLVEMARCMLLQSELGEALWAEAINTAVYLRNRST
FT                 SRALQSKTPMEEWTGKIPAVSHLRVFGAIAVALDKGVHKGKFESKGKEYRM
FT                 IGYSIAAKGYRLFDKEKRCVIEKQDVLFDESGSLVNHGNTIEFQFPATDDP
FT                 EPQSDSNAREGDDTEPVGSSDDYESAAEAEEAEVHVGPGRPKIVRTGRPGR
FT                 PKKQYNVLGVLMASDVEIPKSYEEAINSQYSAKWEEAMGLEYKALLANETW
FT                 KLADLPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFET
FT                 FSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTVYMKQPQGFT
FT                 DAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQS
FT                 GQGNLMLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGME
FT                 VQRDGDLGEITLGHSQYIKELLRDYGSENCRPATTPLDAGHQVLCAGEQCQ
FT                 KVDAGQYQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHIL
FT                 RYLASTVDVKLHYQKCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSGGPVS
FT                 WRSEKQQSVALSSTEAEYMALTTACKEAIALRRLIVEIVCGDLKTPTVMHG
FT                 DNLKCAAQLAKNPVHHSRTKHIDIRYH"
XX
SQ   Sequence 3977 BP; 1130 A; 754 C; 1140 G; 953 T; 0 other;
     ggttaatggg cccagcgccc taggagctgc ctaaaggaga aacgtgtagt gaaactcagg        60
     agttagattt tggagtctac tcaagattgc cggaatgagt aacctgtatc agatcgataa       120
     gctggaggat ggatcctatg aaacgtggag catccagatg cgttcagtgt tggtgcacgc       180
     atgtttgtgg aaggtggttt caggagagtc cgtgaaacct gaggttgata ctggaggtgc       240
     ttggcaatcc caagatgaaa aagcattggc cacgatcatc ttgagtgtga agtcttcgca       300
     acttggttat gtaaaagggt gtctcactgc ggctgaggca tggaaagttt tacaggatgt       360
     ccaccagccg aaagggccgt tacgaacggt catgctgtat aagaagttgc tgagcaaacg       420
     tctgttggaa gggcagagta tatcgtcaca tattaaagaa tttaaggaaa tctttgatgc       480
     ccttgatgcg gtggaaattg gtatcaccga gaaattgcgc agtgttgttt tgctgtcgag       540
     ccttccagag agtttcgaga atttcgttgt cgccattgag acgcgcgacg acgtgccgct       600
     tttcgatgct ctatgtataa agctgatcga ggaagacacg agaaggggag gagcggagca       660
     gcagagagaa aaacaaacgg agagcgcaaa ggcatttact gcagtacata agccacaggc       720
     gccggcgaga gaagctcggc cgagcgcaaa gaagaggaaa gacgtagttt gttataactg       780
     tggagagcgt aggcatttta aagcgaactg tcgtcgcgag aaagtaaaca aagagagcgc       840
     gacacaagaa caatgcagtt tgttaaatgc gctggatagt ggtggttttt ggcaaaacac       900
     agtggtgtct cgatagcggg gctaccagtc acatgtgctg tgacagaagt gtttttactg       960
     agtttgaaga gcacactgaa aaaattagtc ttgctggaaa tggattccta ctagcaaagg      1020
     gcataggaac agtgaagctg aagactgatt tatgtactct ggtattgaat aacgtactct      1080
     tcgtcccaga tttgaacggc aactttatgt cagtcagccg tgcagctcag tataaatgtt      1140
     ttgtcaattt tggaccacat tacgctgacg tcattcagga aggcgagcga atactgcgtg      1200
     taatgagagc tggtaattta tatatgtttc aagggaaaca taacagttgt tttgcggccg      1260
     ttgatgctga tggttcacta tggcataaaa ggaatggcca tttgaataca agcagcctac      1320
     aggagatggt gaggaagaag atggtgtacg gtgttgaaaa ggtcgttttc aaaccagacg      1380
     cagtatgcaa gacgtgcatg ctggcaaaaa tccatgtgca accatttccg aagacaacga      1440
     ggagcagagc tgaggagctg ttggatatga tccattcaga cctgtgcggg ccatttagca      1500
     caccgtcact tgctggatca aagtactttc tcactttcat agacgacaag tccaggcgga      1560
     tttttgtata tttcttgcgg aagaaggacg aagtcttcac taagtttgtc gagtttaaga      1620
     aactggtcga gcgacaaaca ggtagaaaga taaaatgtat ccggagcgat aatggtggtg      1680
     agttcgtcaa taatgttttt gatgactatt taaaggcaca tgggatcgct agacagctga      1740
     ctattccaca cactccccaa caaaatggag ttgcagaacg agccaaccgc acgctagtag      1800
     aaatggctag gtgcatgttg ctgcaatcgg agttgggtga ggctctatgg gctgaggcga      1860
     taaacactgc ggtgtatctg aggaaccgat caacgagcag agcattacaa agcaaaaccc      1920
     ctatggaaga gtggaccgga aaaataccag cagtgagcca cttgagggtt tttggtgcca      1980
     tagcagtggc attggacaaa ggagtccata aaggcaaatt cgaatccaaa ggaaaggaat      2040
     atcgtatgat tggatattca atagctgcta aggggtaccg tctgtttgac aaagagaagc      2100
     ggtgtgtgat cgagaagcaa gatgtccttt ttgatgagtc tggtagtttg gtaaatcatg      2160
     gaaataccat tgagttccag tttcccgcaa ctgatgaccc ggagccgcag agtgattcga      2220
     atgcacggga aggtgacgat acagaacccg tgggcagcag cgacgactat gagagtgcag      2280
     ctgaggcaga agaagctgaa gtacatgtgg ggcctggacg gccaaagatt gttcggacgg      2340
     gcagaccagg gcgcccgaag aagcaataca atgtacttgg cgtgttgatg gctagcgacg      2400
     tcgaaattcc caagtcctat gaggaggcca tcaattcgca gtattctgca aagtgggaag      2460
     aggcaatggg cctggagtac aaggcgctac ttgcaaatga gacatggaag ctggctgact      2520
     taccaagaaa tcgccggtgt gtggcttgca agtgggtgta ttccctgaaa cgagacgtct      2580
     ctggtagaat tgagcgcttc aaggcacgac tagtagcaaa ggggtgttcg cagaagttcg      2640
     gagtggacta cttcgagact ttttcacccg tgtgcaggct cgagagtgtg aggctcattt      2700
     tggcattggc agcagagatg caattgtact tgcatcacat ggacgtatgc acggcgtact      2760
     taaatagcga gctaaaggat actgtgtaca tgaagcagcc ccaagggttc acagatgctg      2820
     ctaatcccga ccaggtgtta ttgctgagga aggcaatata cggcttgaag cagtcaggca      2880
     gagagtggaa ctccaagctc gacggtgttc taaaagactt gggatttaag gcctgtaatc      2940
     atgaaccatg tctttatcag caaagtggtc aaggtaatct gatgctcatc ttagtatatg      3000
     ttgatgattt aattctagcg tgccagtcaa gagaagatat ggaggatctg aaagccaaga      3060
     tttcagagtc tttcgagtgc acggacaagg gtccactgca tttgttctta ggcatggagg      3120
     tgcaacgaga tggcgacctt ggagaaatca ctttgggcca ttcgcaatat atcaaggaac      3180
     tattgcggga ttatggcagc gagaactgta gaccagcgac gacacctttg gatgcagggc      3240
     atcaagtttt gtgcgcgggt gagcagtgcc agaaggtcga cgcagggcag tatcagtcta      3300
     caattggtga gctaatgtgg cttgggctta ctaccagacc agacatgcta cattcggtgg      3360
     cgaagttggc tcagaggaat caggacccgc attctgagca catggtggct gtgaagcaca      3420
     tcctccggta cttggcgtca actgtggacg tcaagctgca ttatcaaaag tgcggtcagg      3480
     catttaccgg ctttgtggat gcagattggg gaggcgaccg tttggaccga aagtcataca      3540
     cagggtatgt gtttttcctg tctggcggac cagtatcatg gaggtccgag aagcagcaga      3600
     gcgtggcgtt gagcagtact gaagccgagt atatggctct gaccacggct tgcaaggaag      3660
     ctatagcttt acgaaggcta atagtggaga tcgtatgcgg tgatctgaag accccgacgg      3720
     ttatgcatgg cgacaacctg aagtgcgcag cacagttagc gaagaacccg gttcatcact      3780
     ctaggacgaa gcacatcgac attcgatatc attagagaag tcatgaaaga gggtcacgtt      3840
     gtgttagagt acacttctac gaatgagatg atagcagaca ttatgacaaa gaatctttca      3900
     aagggaaagc ataatgggtt tatgaaaatg ttaaatttgt tttaattttt gtaaacatgt      3960
     tggcattgag gaaggct                                                     3977
//
ID   DM1731_LTR  repbase;    DNA;    INV; 336 BP.
XX
AC   X07656;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   05-MAR-2011 (Rel. 12.07, Last updated, Version 3)
XX
DE   Drosophila melanogaster retrotransposon 1731 sequence.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; LTR; gag;
KW   retrotransposon; gene; DM1731; DM1731_LTR; DM1731_I.
XX
NM   DM1731_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-336
RA   Fourcade F.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (16-MAY-1988). Fourcade
RL   F., VACNRS 1135 , Universite P. Et M. Curie Bat. A. 5 etage, 7
RL   Quai St. Bernard, 75005 Paris, France.
XX
RN   [2]
RP   1-336
RA   Fourcade-Peronnet F., d'Auriol L., Becker J., Galibert F.
RA   and Best-Belpomme M.;
RT   "Primary structure and functional organization of Drosophila 1731
RT   retrotransposon.";
RL   Nucleic Acids Res 16(13), 6113-6125 (1988).
XX
RN   [3]
RP   1-336
RA   Ziarczyk P. and Best-Belpomme M.;
RT   "A short 5' region of the long terminal repeat is required for
RT   regulation by hormone and heat shock of Drosophila
RT   retrotransposon.";
RL   Nucleic Acids Res 19(20), 5689-5693 (1991).
XX
DR   GenBank; X07656; Positions       1     336.
XX
SQ   Sequence 336 BP; 94 A; 62 C; 63 G; 117 T; 0 other;
     tgttgaatat aggcaatgcc cacatgtgtg ttgaatatag gcaatttcca catgtgcata        60
     tgtaattttg tatgagaaca tacatacata cacatgaact gtatgtatgt atatatatta       120
     gcaaataagc agccgcatga aggtggcatt tttatgtgta tcagtttcag tttcaaataa       180
     aacttcttcg tgttcggaca cgcggctcaa gactttttat ttcgcgttta ctctttcagc       240
     ctttgctctc aattcgctga gtttgggtga agattaggat cttcccatta tgattgtcag       300
     tgttccacac ttggagcacc ttttcaataa acaaca                                 336
//
ID   DM176-I     repbase;    DNA;    INV; 6486 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 4)
XX
DE   Drosophila melanogaster element 17.6.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; transposon;
KW   reverse transcriptase; Long terminal repeat; Repetitive element;
KW   DM176; DM176-I.
XX
NM   DM176.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6486
RA   Saigo K., Kugimiya W., Matsuo Y., Inouye S. and Yoshioka K.;
RT   "Identification of the coding sequence for a reverse
RT   transcriptase-like enzyme in a transposable genetic element in
RT   Drosophila melanogaster.";
RL   Nature 312(5995), 659-661 (1984).
XX
RN   [2]
RP   1-6486
RA   Bao W.;
RT   "Updated with consensus and splite the internal and LTR region.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   Despite the original classification as a Copia-like element, this
CC   element clusters with Gypsy-like elements.
CC   [2]: updated the consensus, ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           633..1949
FT                 /product="DM176-I_1p"
FT                 /translation="MAQEPAIVPPLSDSNMTQVAYQIGNVEKFNGDPGSLY
FT                 TFVSRIDYILALYATGDERQQQIIFGHIERSISGEVMRCIGAYDMYTWQQL
FT                 RRQLVLNYKPQTPNHVLLEEFRKTPFRGNVRAFLEEAESRRQTLTSKLELE
FT                 QDLEEKTFYLKLIKSSIESLIEKLPTHIYLRINNHNIPDLRSLINLLQEKG
FT                 MYEQINHTSTHVQKQNFSDKPQKSFNQNTNQSNNIRKYPTPFLHYNSPIPY
FT                 QAPQIYQTPPTNNPLYRHPIPYHPNPNNVFQPSQQNNVFQPSQQNNAFQPN
FT                 QRTNFTSRPIFNTNRNNAFDQNRFGQQPQYQNQQSTQNSSSYVPNRPIKRL
FT                 RPANSGQTGMSVDETLYQEDAFYQQCVPYDYFYYPTYDHSDYYPENQYQID
FT                 ENNQNLQRTQQLQQINTDETNNDNQEPNVEQAENFQPQALENPNI"
FT   CDS           2012..5077
FT                 /product="DM176-I_2p"
FT                 /translation="MTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKI
FT                 LFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIE
FT                 GIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLYRLEHLNNEEKQRLCA
FT                 LLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQ
FT                 IQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVG
FT                 DRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGH
FT                 YEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHL
FT                 QSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAI
FT                 QKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNP
FT                 EYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLS
FT                 YISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWL
FT                 YRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQ
FT                 TQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFY
FT                 DIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILR
FT                 STILLKNITTYAEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQ
FT                 NIINECSICNLAKTEHRNTDMPMKTTPKPEHCREKFMIDIYSSEGKHYVSC
FT                 IDIYSKFATLEEIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLAL
FT                 KRWLESEEVELQLNTTKTGVADIERLHKTINEKIRIIKTSDDEETKLSKME
FT                 TVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKENKINKINNDRVEY
FT                 EVDTRYRKGPLQKGKLENPFKPTKNVEQTDSDHYKITNRNRITHYYKTQFK
FT                 KRKKNNQLSISQAPGT"
FT   CDS           5095..6462
FT                 /product="DM176-I_3p"
FT                 /translation="MLITTVHGQQIEINNIDTNHGYLLFSDKPVQIPSSFE
FT                 HHCLRINLTEIDTIADYFEQRLRTDYHAPQVKFLYNKMRRELAGIALRHRN
FT                 KRGLINIVGSVFKYLFGTLDENDRVDIQRKLETNAHNSVNLHELNDAIQLI
FT                 NDGMQKIQNYENNSNIINSLLYELMQFTEYIEDVEMGMQLSRLGLFNPKLL
FT                 NYDKLENVNSQNILNIKTSTWINYNDNQLLIISHIPINFSLINTVKIIPYP
FT                 DSNGYQLEYTDTQSYFERENKVYNNENKEINNECVTNIIKHLKPICNFESI
FT                 HTDEIIKYIEPNTIVTWNLTQTSLKQNCQNSFNNIKIKGNKMIKVTQCKIE
FT                 INSIILSENLFKPEIDLTPLYTPLNITKIKTVKHNDINEMISQNNITLYIF
FT                 MTTVIIILILLYLYLRYVSFNPFMMLYAKLKLRKNQNQNTAQQIEMEDVPL
FT                 PLLYPSIPAQV"
XX
SQ   Sequence 6486 BP; 2694 A; 1277 C; 917 G; 1598 T; 0 other;
     ggcgcagtcg atgtgatcag tgttaaagtt ccttgatgcg gtaaccagat ttgccaattc        60
     ctgtgttctt tttgttctct gacaaaagta ccacgctaac gggcacccac gtgacggtta       120
     atatcgcttt aagtttttaa ttaaacctcg acaataaagt gaaaccgaaa aatcacaatt       180
     tgcctaaaca aacctgaatt tattatcagg aagacgctat tgaatttgtg agaggctgta       240
     aatccaattg gttacctcaa agacccacga aaaagctata gtgcaaccct tgtgaaaatc       300
     aaaacctatc ttaaaaaaaa aaaaaaaaat ataaataata aattaataag cgaaaattaa       360
     aacgtattaa aagtaagaat aataaataaa taagtgaaaa ttctatatga taaaaattaa       420
     aaataagaat aataaataaa aagacaacat tttaaattaa acaatattaa aaaaatataa       480
     aaatattaaa aactatatta aaaaaaaaaa aaaaaaaaaa caaaaaaaca aaaaaaaaaa       540
     tacacgataa taataatata ataactaaat aataataata ataaaaaaaa aaaataaata       600
     aaaaaaataa ataaataatc caaaaatcaa aaatggctca agaaccagca attgtgccac       660
     cactatcaga cagcaacatg acccaggttg cctaccagat tggcaatgtg gagaaattca       720
     acggtgatcc aggctcacta tacacctttg tgagtcgaat tgattacata ctggctcttt       780
     atgctaccgg agatgaacgc caacagcaga tcatatttgg gcatattgaa cgcagcatca       840
     gcggagaagt tatgcgctgc attggagcct atgacatgta cacctggcag cagcttagaa       900
     gacaattggt actcaactat aaaccccaga cccctaacca cgttctttta gaagagtttc       960
     gaaagacccc atttcgaggc aatgtacgag cattcctgga agaagcagaa agccgcagac      1020
     aaacacttac tagtaagctt gaattagagc aagatcttga agaaaagact ttttatttga      1080
     aattaataaa atccagtata gaatcactaa ttgaaaaatt acctacacac atttatttaa      1140
     gaataaataa ccacaacata ccagatttgc gatcacttat aaacctttta caagagaagg      1200
     gcatgtacga acaaataaat catacaagta cacatgtcca aaaacaaaat ttctctgata      1260
     agccacaaaa gtcctttaat caaaatacta atcagtctaa caatatcaga aaatatccaa      1320
     cacctttcct acattataat tcaccaatac catatcaagc tccacaaatt tatcaaacac      1380
     caccaactaa taacccactt tatcgtcatc caatacccta ccaccctaat ccaaacaatg      1440
     tttttcaacc aagccaacaa aacaatgttt tccaaccaag ccaacaaaac aatgcttttc      1500
     aaccaaatca acgtacaaac tttacatctc gaccaatttt taacaccaat cgaaacaatg      1560
     cattcgatca gaataggttc ggacaacaac cccaatatca aaatcaacaa tcaacacaaa      1620
     attcaagttc ctatgtaccc aatcgaccaa taaaacgatt aagaccagct aatagtggac      1680
     agactgggat gagtgttgac gaaacattat atcaagagga cgctttttat cagcagtgtg      1740
     ttccatatga ctatttttat tatccaactt acgaccattc agactattat ccagaaaatc      1800
     aatatcaaat tgacgaaaac aaccaaaatt tacaaagaac acaacagtta cagcagatta      1860
     atacagacga gacaaacaat gacaaccaag aacccaatgt tgaacaggcc gaaaattttc      1920
     agccacaagc cttggaaaac cccaatatat aacaattaaa tacaaagaaa ataatttgaa      1980
     atgccttatt gataccggat caacagttaa catgacatct aaaaatatat ttgatttacc      2040
     aatccagaat actagtactt ttattcatac cagcaatgga ccgctcattg tcaacaaaag      2100
     tataatcata ccttcaaaga ttttgttccc aacaacaaat gaatttttat tgcacccttt      2160
     ctctgagaat tacgatcttt tattaggaag aaaactttta gcagaagcaa aagcaacaat      2220
     aagttaccgc gatcaagagg taactcttta caacaacaaa tacaaattaa tagaaggaat      2280
     agcaacacat gaacagagtc attttcaaaa tgtaaatatg atacctgaca ccatgctcag      2340
     acagccaaat aaaatttcac ccattttaga atcagaccta tacagattgg aacatttaaa      2400
     taacgaagaa aaacaaagat tgtgcgcact cctgcagaaa taccatgaca tacagtacca      2460
     tgaaggtgat aagttgacat ttactaatca aaccaaacat actatcaata caaagcacaa      2520
     tctaccactt tactctaaat acagttaccc acaggcttat gaacaggagg tcgaaagcca      2580
     aatacaagat atgctaaatc aaggtattat acgtaccagt aattcacctt acaatagccc      2640
     catctgggtg gttccaaaga aacaagatgc atcaggcaaa cagaaattta gaattgtaat      2700
     agactaccga aaattaaatg aaataacagt aggagacaga cacccaatcc caaacatgga      2760
     cgaaatcttg ggaaaattgg gcagatgtaa ttacttcaca actatagact tggcaaaggg      2820
     tttccaccag atcgaaatgg atccagaatc agtttcaaag acagcctttt ctaccaagca      2880
     cggtcattat gaatatttgc gcatgccatt cggattaaaa aacgcgccag ccacctttca      2940
     acggtgcatg aatgatattt taagaccact cttaaacaaa cactgtcttg tgtatttgga      3000
     cgacataatt gtattctcga catcccttga tgaacacctg caatcgctcg gactagtttt      3060
     cgaaaaatta gcaaaagcca accttaaatt acagcttgac aaatgtgagt ttctcaagca      3120
     agaaaccaca tttttaggac atgttctaac accagatgga ataaaaccaa accctgaaaa      3180
     aattgaagcc attcaaaaat atccaattcc cactaaacca aaagaaataa aagcttttct      3240
     tggactgaca ggatattatc gtaaatttat tccaaacttt gcagacatag ccaaacccat      3300
     gactaagtgt ttaaaaaaga acatgaaaat tgacactacc aacccagaat atgactctgc      3360
     atttaaaaaa ttaaaatatc taatatcaga agacccaatt cttaaagtac ccgactttac      3420
     aaagaaattc actttaacca cagacgcaag tgatgtcgct ttgggggcag tactgtcaca      3480
     agatggacac ccacttagct acattagccg aacacttaat gaacacgaaa taaattacag      3540
     cacaattgaa aaagaactct tagcaattgt atgggcgaca aagacttttc gacactacct      3600
     acttggaaga cactttgaaa tatccagtga ccatcaacca ttgagctggt tgtaccgtat      3660
     gaaagaccca aattcaaaac tgacccgatg gagagtaaaa ttatccgaat tcgattttga      3720
     tataaaatat ataaaaggaa aagaaaattg cgtggcggat gctctgtcca gaataaaact      3780
     tgaggagaca tatttgagcg aacaaaccca acatagtgca gaagaggaca atagtgattt      3840
     aatttttatt acagaaagac ctctaaatac atttaacaga caagttatat tttcaaaagg      3900
     accaccagac attaaagtta cgaaatattt caaaaaacac atcacccaaa tattttacga      3960
     cattatgacc agggaaaaag ccgaacaata tttgatagac catttttgtg gtaagaaaag      4020
     tgcgttgtat attgagagtg acgctgattt cgaagtcatt caagccgcac ataaattagc      4080
     cataaacacc aaatatacaa aaatcctgcg tagcacgatt ttgttaaaaa acataaccac      4140
     ttatgcggaa tttaaggaat tgatcttgac tgctcatgaa aaacttctac acccaggcat      4200
     acagaaaact actaaacttt tcggagaaac ttactatttc cctaatagcc agctacttat      4260
     tcagaatata ataaatgagt gcagtatttg caatctggca aaaacagagc accgaaatac      4320
     agacatgcca atgaaaacca cacccaaacc agaacattgc cgcgaaaaat tcatgataga      4380
     catttactca tccgaaggca aacattacgt tagttgcata gacatttatt cgaaatttgc      4440
     cacattagaa gaaataaaaa caaaagactg gatagaatgc aaaaacgcgc ttatgcgcat      4500
     attcaaccag cttggcaagc caaagttact aaaggcggac agagacggcg cattttccag      4560
     tttagccctc aagagatggc tggagagtga ggaagtcgaa ttgcagctta acacaacaaa      4620
     aactggtgtg gcggacatag aaagactaca taaaacaatt aatgaaaaga ttcgcataat      4680
     caaaacatcc gatgacgaag aaaccaaatt gagcaaaatg gaaacagtac ttaacatata      4740
     caatcataaa accaaacacg acaccactgg acagacccct gcacacatat ttctctacgc      4800
     tggacaacca atattagata cccaacaaaa caaagaaaac aaaataaaca aaataaataa      4860
     tgacagagtg gagtacgaag tcgacacaag atacagaaaa ggtccactac agaaaggcaa      4920
     attagaaaat ccttttaagc caacaaaaaa tgtggagcag actgactctg atcattataa      4980
     aattactaat agaaatagaa ttactcacta ctacaaaaca caattcaaaa aacgaaagaa      5040
     aaataatcag ctctcaattt cacaggcacc tggcacttga taacattgct gctgatgctg      5100
     atcacaacag ttcatggaca acaaattgaa attaataata ttgacacaaa ccacggatat      5160
     ctcctttttt ctgataaacc agtccagata ccatcatcct ttgaacatca ttgcttgaga      5220
     atcaatttaa ctgaaataga caccatagct gattattttg agcaaagact acgtaccgac      5280
     taccatgcac cccaggtcaa atttttatac aacaaaatga gaagagaact agctggaata      5340
     gccttgcgac atagaaataa acggggactt attaacattg taggttcagt ttttaaatac      5400
     ctatttggca cacttgacga aaatgatcga gtggatatac agaggaaact tgaaacaaac      5460
     gcccataact cggtaaattt acatgaactc aatgacgcta ttcaattaat aaatgacgga      5520
     atgcaaaaga tacagaatta tgaaaacaac agcaacatca ttaacagtct tttatatgaa      5580
     ctcatgcagt ttacagaata catagaagat gtggaaatgg gaatgcagct ttccagactc      5640
     ggtctattta atcccaaact actaaactac gataaacttg agaatgtaaa cagccaaaat      5700
     attttaaaca ttaaaacatc cacttggatt aattacaatg ataaccaatt attaatcata      5760
     tctcacatac ctattaactt ttcattaata aatacagtaa aaataatccc ttacccagac      5820
     tcgaacggct atcagctaga atacacagac acacaatcat attttgaaag agaaaataaa      5880
     gtttacaata acgaaaataa agaaataaac aatgagtgtg tcaccaacat tattaaacat      5940
     ttaaaaccaa tttgtaattt tgagtcaatc cacacagatg aaataataaa atacatagaa      6000
     ccaaacacaa ttgtaacctg gaatttaacc caaacaagtc tcaaacaaaa ttgtcaaaat      6060
     tcatttaata atataaaaat aaaaggaaac aaaatgataa aagtaaccca atgtaaaata      6120
     gaaatcaata gcataattct aagtgaaaat ctctttaaac cagaaataga tttgacacca      6180
     ttatacacac cacttaacat aacaaaaata aaaactgtta aacacaacga cattaatgaa      6240
     atgatttcac aaaacaatat tacactttac atatttatga ctactgtcat cattatactt      6300
     attttattgt acttatattt aagatacgta tcatttaacc cattcatgat gctgtatgca      6360
     aaactaaaat taagaaaaaa tcaaaatcaa aacacagcac aacaaataga aatggaagac      6420
     gttccattac ccctactata tccatcaatc ccagcccaag tataggcttc tctttaaggg      6480
     aaggga                                                                 6486
//
ID   DM176-LTR   repbase;    DNA;    INV; 512 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Drosophila melanogaster element 17.6.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DM176; DM176-I;
KW   Long terminal repeat; Repetitive element; reverse transcriptase;
KW   transposon; DM176-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-512
RA   Saigo K., Kugimiya W., Matsuo Y., Inouye S. and Yoshioka K.;
RT   "Identification of the coding sequence for a reverse
RT   transcriptase-like enzyme in a transposable genetic element in
RT   Drosophila melanogaster.";
RL   Nature 312(5995), 659-661 (1984).
XX
RN   [2]
RP   1-512
RA   Bao W.;
RT   "Updated with consensus and splite the internal and LTR region.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 512 BP; 169 A; 119 C; 67 G; 157 T; 0 other;
     agtgacatat tcacatacaa aaccacataa cgtagagtaa acatattgaa aagccgcata        60
     cgtaaacaat aagtgaccac catgctaatg tggatcaaat aacaaaaata tccactctgc       120
     attttgacac ccccatactg tatgccatct gcgcagtatg cattctaata aacaaattct       180
     ttgacagcgg cacttagcca ttcttgtaaa caaatcttaa agtctgcctg ctctctctga       240
     ggcttctcct ccacttaaga atccaagagc aatgctctcc caaaaacact aacatattct       300
     ttaagcaagc acagaggctt ctcctcattt tcactttcat ttgattttca gtcttaagct       360
     gaacgttaat caataaacaa cacaatcgat cccgaaattt tgattcgttt tattttggca       420
     aaactcaatt ttcagcgttg gtcttagttc atattcggaa cggtccattt aatagactca       480
     aaactattta ttgcaaccat ttatttgcaa tt                                     512
//
ID   DM297_I     repbase;    DNA;    INV; 6167 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   DM297_I is an internal portion of DM297 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; DM297_LTR; DM297_I.
XX
NM   DM297_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6167
RA   Inouye S., Yuki S. and Saigo K.;
RT   "Complete nucleotide sequence and genome organization of a
RT   Drosophila transposable genetic element, 297.";
RL   Eur. J. Biochem 154(2), 417-425 (1986).
XX
DR   [1] (Consensus)
XX
CC   DM297_I is an internal portion of DM297 Gypsy-like retrovirus.
CC   Its long terminal repeats are listed in Repbase Update as
CC   DM297_LTR. DM297_I encodes gag (position 389-1630);
CC   pol (1585-4761) and env (4731-6143) polyproteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1630
FT                 /product="DM297_I_1p"
FT                 /translation="MSQPIIALSDINLAEARRQLKDIMPFKGDPETLHTFI
FT                 SRVDYVISLYQTNDVRQQRILLGAIERNLDGQITRSLGLPNVEDWPTLKAR
FT                 LIAEFKIQTPNYKLLENFRETPYRGSLRAFCEEAERRRQLLISKLHLEGNQ
FT                 SDFLIYIQGIKESIKILIRKLPIQLFTILAHHDITDLRSLITIAQNEGIYE
FT                 EHINFEFYEKPEYRNKNSNSNQNSKTQKFNTNVQTQNRPSYSQYSQPFQPN
FT                 FNQYIQPFRPSYTQQITNNPPMWHAPNYFRPNQYINPQPIIQKNHFQQYPN
FT                 KAQFPQTTHFRGNTYPRLQQPSTYKNTNFPITKRLRPSDSEQTKMSIDEIR
FT                 FQDAHEFEQVQPNYYEQQYFNQNQYNPYQNHSFINEGQQQVQFVQINNKQN
FT                 QNNSELNENFRLTVPENTNT"
FT   CDS           1585..4761
FT                 /product="DM297_I_2p"
FT                 /translation="TKRKFSVNSSGKYEYIKIVYKGRSYKCLLDTGSTINM
FT                 INENIFCLPIQNSRCEVLTSNGPITLNDLIMLPRNSIFKKTEPFYVHRFSN
FT                 NYDMLIGRKLLKNAQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTP
FT                 ESIASSDQESIKKLDFSQFRLDHLNQEETFKLKGLLNKFRNLEYKEGEKLT
FT                 FTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSP
FT                 YNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLG
FT                 KCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPAT
FT                 FQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLK
FT                 LQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL
FT                 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRD
FT                 PILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAI
FT                 EKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVR
FT                 LSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLT
FT                 EKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVMTLEKAKQILLDH
FT                 FIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYAEFK
FT                 EIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTE
FT                 HRNTKMPLKITPNPEHCREKFVVDIYSSEGKHYISCIDIYSKFATLEQIKT
FT                 KDWIECRNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNT
FT                 AKNGVADVERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTT
FT                 GQRPAQIFLYAGHPILDTQKIKEKKIEKINEDRREFNIDTNYRKGPLQKGK
FT                 LENPFKPTKNVEQTDPDHYKITNRNRVTHYYKTQFKKQKKNNKLSISQAPG
FT                 TR"
FT   CDS           4731..6143
FT                 /product="DM297_I_3p"
FT                 /translation="TLNFTGTWYPITLLFILITAVHGQQIQINNIDTNHGY
FT                 LLFSDKPVQIPSSFEHHSLKINLTEIDIVVDYFEQRLRTDYHAPQINFLYN
FT                 KIKRELARITLKHRNKRGFINIVGSGFKYLFGTLDENDRVEIQKKLEINVH
FT                 NSVKLHELNDAIRLINDGMQKIQNYENNHTIIDSLLFELMQFTEYIEDLEM
FT                 AMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQVLIISHIP
FT                 IYLSLISTIKIIPYPDSNGYQLDYTDTQSYFEKENKVYNTENKEVKNECVT
FT                 NIIKHLNPICNFKPVHTNEIIKYIEPNTIVTWNLTQTILNQNCQNSINKIK
FT                 IEGNKMIRVTQCKIEINNINFSETLLEPEIDLTPLYTPLNITKIKIVKHND
FT                 IIEMISENNITLYIQMIIVIIALILLYSYLRYVSFKPFMMLYAKLKIRKNQ
FT                 NQNTPQQTEIEEIPFPTLYPSIPAQV"
XX
SQ   Sequence 6167 BP; 2565 A; 1166 C; 844 G; 1592 T; 0 other;
     ggcgcagtcg gtaggataca aaagtatccg aaaaaaaaga accttcgaat ggaaaataag        60
     ttaaatttta tagtcctgtg ctcgaaacat ctcccaaaat aaattcgtga aaactcttca       120
     acttcaatta taattccaat tcggttatcc aataataagt ggaagtgaaa tacgaaacaa       180
     aaatattaag tccaaaggca actaagtttt aaaaccaaca tataaaaata aaaaattaaa       240
     acaatataga attttaataa tacaacacaa aaatttacaa aacaaaaaaa caaacaagtg       300
     aaactagaaa gcttaaaaat aataataaca ttgaatccga aacaaaacaa aaaaataaaa       360
     cacaaaagtt aaaaatttta caataaaaat gtcacaacca attattgcgc tgagcgacat       420
     aaaccttgcc gaagcccgtc ggcagcttaa agacattatg ccattcaagg gtgatccaga       480
     aacccttcac acctttatca gcagagtgga ttacgtaatt tcgctctacc aaacaaatga       540
     tgtccgacaa cagaggattc tactgggagc catcgaaagg aacttggacg gacaaattac       600
     acgatctttg ggacttccga acgtcgaaga ttggcctacc cttaaagcaa gactcatcgc       660
     ggaatttaaa attcaaacac caaactacaa acttctggag aacttcaggg agacaccata       720
     cagaggaagc ctaagagcat tctgcgaaga agcggagaga cgacgtcaat tactaatttc       780
     gaaactacac ctggaaggta accaatcgga ttttcttatt tatattcagg gtattaaaga       840
     atctattaag atactgataa ggaaactacc aatacaatta ttcactattt tagcccatca       900
     cgatattaca gacttaagat ccttaattac cattgcacaa aatgagggaa tttatgaaga       960
     acacattaat tttgaatttt atgaaaaacc agaatatcgt aataaaaatt caaattctaa      1020
     ccagaattcg aaaacacaaa aattcaatac aaatgttcaa actcaaaatc gaccaagtta      1080
     ctcacaatat tcccaaccct tccaacctaa ttttaatcaa tacattcaac catttagacc      1140
     tagctataca cagcagataa ctaacaaccc acccatgtgg cacgcaccta attatttcag      1200
     acccaaccaa tacataaacc cacaacccat tattcaaaaa aatcatttcc aacaatatcc      1260
     caacaaagcc caatttcccc aaacaacgca ttttagagga aatacatacc ctcgactaca      1320
     acaaccctct acatataaaa atactaactt cccgattact aaacgactaa gaccatcgga      1380
     cagtgaacaa actaaaatgt ctattgacga aattagattc caagacgcgc atgaattcga      1440
     acaagtccaa cctaattatt acgagcaaca gtattttaac caaaatcaat acaatccgta      1500
     tcaaaatcat agcttcatta atgaagggca acaacaagtt caatttgtac aaattaataa      1560
     caaacaaaac caaaataatt ctgaactaaa cgaaaatttt cggttaacag ttccggaaaa      1620
     tacgaataca taaaaatagt atacaaaggg cgttcataca aatgccttct agacacagga      1680
     tcaacaatta atatgatcaa tgaaaatata ttttgtcttc ccattcaaaa tagtagatgt      1740
     gaagttttaa catcaaatgg ccctattacc ttgaacgact tgattatgtt acccagaaat      1800
     agtattttca aaaaaaccga accattttat gtgcacagat tttctaataa ttacgatatg      1860
     ctaattggca gaaaattgtt gaaaaatgct caatcagtta ttaattacaa aaatgataca      1920
     gttacccttt ttgatcaaac atacaaatta attacttcag aatccgaaag aaaccaaaat      1980
     ttgtatatcc aaaggacacc agaatcaatt gcaagctcag atcaggaatc aataaaaaaa      2040
     ttagattttt cacagtttcg attagatcac ctaaatcagg aggaaacttt taagttaaaa      2100
     ggcttgttaa ataaatttag aaatcttgaa tataaggagg gagagaaatt aacatttaca      2160
     aatacaatta aacacgtact aaatacaaca cataactccc caatttattc gaaacaatac      2220
     ccacttgcgc aaacacacga aatcgaagta gaaaaccaag tacaggaaat gctgaatcag      2280
     ggattaatta gggaaagtaa ttctccatac aatagtccta cttgggtcgt accaaagaaa      2340
     ccggatgctt ctggtgcaaa taagtacagg gtagtaattg attatagaaa gctaaatgaa      2400
     ataaccatac ctgacagata tccaattcca aatatggacg aaattcttgg caaactgggt      2460
     aaatgccaat attttacaac gatcgatctg gcaaagggat ttcatcaaat agaaatggac      2520
     gaagaatcaa tttctaaaac tgcattctcc acaaaaagcg gtcattacga ataccttcga      2580
     atgccatttg gccttaggaa tgcacccgct acttttcaaa ggtgcatgaa taatatcctt      2640
     cgaccgttgc ttaacaaaca ctgtttggtg tatctggatg atattataat tttttcaaca      2700
     tcccttacag aacatttaaa ttcaatacaa ttagttttta caaagcttgc agatgcaaat      2760
     ttaaaattgc aactagacaa atgtgagttc ttaaaaaagg aagctaactt tcttggtcac      2820
     atagttaccc ctgatggtat taaaccaaat cctattaaag ttaaagccat agtttcatac      2880
     ccaattccga caaaagataa agagataaga gctttccttg gattaacagg ttattatcgc      2940
     aaatttattc caaattacgc agacatagca aaacccatga ccagctgctt aaaaaaaagg      3000
     acaaagatag atacacaaaa acttgagtac atagaggcat tcgaaaaact taaggctttg      3060
     ataattcgtg acccaatttt acaattacct gattttgaaa agaaatttgt tttaaccaca      3120
     gatgcaagta acttggccct cggggctgtc ctttctcaaa acggtcatcc tatatctttt      3180
     attagtagaa cacttaacga tcacgaatta aattacagtg ctatcgaaaa agaattactt      3240
     gccatagttt gggccacaaa aacttttcga cattatttac taggacgaca atttctcatt      3300
     gccagtgacc atcaacctct tagatggctt cataacttaa aggaaccagg tgctaagtta      3360
     gaaagatgga gagttagatt aagcgaatac caatttaaaa tagattatat taaagggaaa      3420
     gaaaattcag ttgccgatgc attatcaaga attaaaattg aagaaaatca tcatagtgaa      3480
     gctactcaac atagtgcaga agaggacaat agcaacctta ttcatttaac agaaaaacca      3540
     ataaattatt tcaaaaaaca aataatcttt attaaatccg ataaaaataa agtagagcat      3600
     tcaaaaatat tcggtaactc cattaccaca attcaatatg acgtaatgac acttgaaaag      3660
     gccaaacaaa ttttactcga tcactttatc catagaaaca ttaccattta tattgagagc      3720
     gatgtagatt ttgaaatcgt tcaaagagca cacatagaaa ttgttaatac cacctacaca      3780
     aaagtaattc gcagtctttt cctattaaag aacgttggtt catacgccga attcaaagaa      3840
     atcatacttc aatcacatga aaaactttta caccctggta tacagaaaat gacaaaatta      3900
     tttaaagaaa atcacttctt tccaaatagc caactattaa ttcagaatat aataaacgaa      3960
     tgcaacatat gcaatttggc caaaacagaa catagaaaca ccaaaatgcc tttaaaaatc      4020
     acacccaacc cggaacattg ccgagaaaaa tttgtagtag atatttattc atctgaggga      4080
     aaacattaca tcagttgcat tgatatttat tctaaattcg ctacacttga gcaaattaaa      4140
     actaaggatt ggatagaatg cagaaacgca ttaatgcgca tttttaatca actaggaaaa      4200
     cccaaattat taaaggcaga cagagacgga gctttctcca gtttagcttt aaagcgatgg      4260
     cttgaagaag aagaagtcga attacagctc aatacagcaa aaaacggagt agcagacgtc      4320
     gaaagattac acaaaacaat aaatgaaaaa attcgtataa tcaattcatc tgatgatgaa      4380
     gaagtaaaat taagcaagat agaaacaatc ctctacacat acaaccaaaa aattaaacat      4440
     gacactactg gacagagacc tgctcaaatt ttcttatacg ctgggcatcc catattagac      4500
     actcaaaaaa ttaaagagaa gaaaatagag aaaataaatg aagacagacg ggaatttaat      4560
     attgacacta attacagaaa aggtccacta cagaaaggca aattagaaaa cccatttaaa      4620
     ccaaccaaaa atgtagaaca gacagaccct gaccattaca aaatcactaa tagaaataga      4680
     gttacgcact actacaaaac acaattcaaa aaacaaaaga aaaataataa actctcaatt      4740
     tcacaggcac ctggtacccg ataacactat tgtttatact gatcacagct gttcatggac      4800
     aacaaattca aattaataat attgacacca accacggata tctccttttt tctgataagc      4860
     cagtacagat accatcctcc tttgaacatc actccttaaa aatcaattta actgaaatag      4920
     acatcgtggt tgactatttt gagcaaagac tacgaaccga ttaccatgca ccccagatca      4980
     attttttata caataaaata aaaagagaac tagccagaat aaccctgaaa catagaaaca      5040
     aacggggttt tattaacatt gtgggttcag gttttaaata cctatttgga acactagatg      5100
     aaaatgatcg agtcgaaata cagaaaaaac ttgaaatcaa cgtccataac tcagtaaaat      5160
     tacatgaact caacgacgcc atacgattga taaatgacgg aatgcaaaaa atacagaatt      5220
     atgaaaataa ccacaccatc attgacagtc ttttgttcga actaatgcag tttacggaat      5280
     acatagaaga tttggaaatg gctatgcagc tttccagact tggactgttt aaccccaaat      5340
     tactaaacta cgacaaactt gaaaatgtga acagccaaaa cattttgaac attaaaacat      5400
     ccacttggat taactacaat gataaccaag tattaatcat atcccacata cccatttacc      5460
     tttcactaat aagcacaatt aaaataattc cttacccaga ctccaacggc tatcagctag      5520
     attacacaga cacacaatca tattttgaaa aagaaaataa agtttataat accgaaaata      5580
     aagaagtaaa aaatgaatgt gtcaccaata ttattaaaca cttaaatcca atttgtaatt      5640
     ttaagccagt acacacgaac gaaataataa aatacataga accaaacaca attgtaactt      5700
     ggaacttaac ccaaacaatt cttaaccaaa attgccaaaa ttcaattaat aaaataaaaa      5760
     tagaaggaaa caaaatgata agagtaacgc aatgcaaaat agaaatcaat aatataaatt      5820
     ttagtgaaac tctgttagaa ccagaaatag atttgacacc actatacaca ccacttaata      5880
     taacaaaaat aaaaattgta aaacacaacg acattattga gatgatttca gagaacaata      5940
     ttacacttta catacaaatg atcattgtaa taatcgcact aattttgttg tactcatatt      6000
     taagatatgt atcatttaaa ccatttatga tgttgtatgc aaaacttaaa ataagaaaaa      6060
     atcaaaatca aaacacacca caacaaacag aaatagaaga aattccattt cccacactat      6120
     atccatcaat cccagcccaa gtataggctt ctctttaagg gaagggg                    6167
//
ID   DM297_LTR   repbase;    DNA;    INV; 414 BP.
XX
AC   X03431;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   DM297_LTR is a long terminal repeat from DM297 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DM297_I;
KW   DM297_LTR; endogenous retrovirus; Gypsy superfamily.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-414
RA   Inouye S., Yuki S. and Saigo K.;
RT   "Complete nucleotide sequence and genome organization of a
RT   Drosophila transposable genetic element, 297.";
RL   Eur. J. Biochem 154(2), 417-425 (1986).
XX
DR   GenBank; X03431; Positions       1     415.
XX
SQ   Sequence 414 BP; 123 A; 95 C; 64 G; 132 T; 0 other;
     agtgacgtat ttgggtggtc caaaccagcc acttccatta tttcaaagaa atcagtaatg        60
     cactctagta attttccata actgtatccc agctgcgcag actcgtttat cttttgcagc       120
     gcagcgttct ttgtaaacat cctaaagacc tgcctaagca gatttgactg ccctctttca       180
     acgctaccta atcttaagaa cccaagagcg aggctctccc gaaatacaaa tattgttcaa       240
     atactgaggc ttctcctcaa tccaatttgc atttgatttt tagtcttaag ctgagatcca       300
     aagaataaag tcgtgaaact atttctccta aaaactattt tttatttctt ggcgttgtcc       360
     ttagtcaact gacgggacat tagttcgact cataaataaa acaacaattt tact             414
//
ID   DM412B_LTR  repbase;    DNA;    INV; 571 BP.
XX
AC   J01109; V00196;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   DM412B_LTR is a long terminal repeat from the DM412 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DM412B_LTR;
KW   DM412_LTR; Long terminal repeat.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-571
RA   Will M.B., Bayev A.A. and Finnegan J.D.;
RT   "Nucleotide sequence of terminal repeats of 412 transposable
RT   elements of Drosophila melanogaster. A similarity to proviral
RT   long terminal repeats and its implications for the mechanism of
RT   transposition.";
RL   J. Mol. Biol 153(4), 897-915 (1981).
XX
DR   GenBank; V00196; Positions       1     571.
XX
SQ   Sequence 571 BP; 194 A; 117 C; 107 G; 153 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc gcccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaaactg taaaatcaga gagactctgt agacgttgag       360
     ctgacagaac catttctgcc tactctaaaa tcaaaagaag aaattgaata aatatatgtc       420
     agcccgacgg ctgccttaaa cttaaaacgg acttgtgttc ttaattggag ttcatcatta       480
     cacaagtgta aatgttaacg aatctagagc atagcatagc ttagcataaa ctatgacgac       540
     tagttatcgt gacaagcagt tcatcattac a                                      571
//
ID   DM412_I     repbase;    DNA;    INV; 6477 BP.
XX
AC   .
XX
DT   20-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   DM412_I is an internal portion of the 412 LTR retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag; Retrovirus;
KW   pol; Gypsy superfamily; internal portion; TABOR clade; DM412_LTR;
KW   DM412; DM412_I.; DM412_I.
XX
NM   DM412_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6477
RA   Yuki S., Inouye S., Ishimaru S. and Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila
RT   retrotransposon, 412.";
RL   Eur. J. Biochem 158(2), 403-410 (1986).
XX
DR   [1] (Consensus)
XX
CC   Long terminal repeats from the DM412 retroelement are deposited
CC   in Repbase Update as DM412_LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1301..2653
FT                 /product="DM412_I_1p"
FT                 /translation="MDWEKLVDQIKDQNENFRKSYKCLTQNRSTQAVTINR
FT                 NAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIKNKFSL
FT                 QIEIPTIVNTPLRINLNEDSTNSDEEDRTIVKEDIKEEDLHDLTIPAKLML
FT                 KNDDKTNNAADSENNLTMAEEAAAIRSYIREVACTVPEFDGQKIHLQRFIK
FT                 AIKLVDLAKGPFEDIAVEVIKSKIVGTILNSVDNETTIPAIINKLQKVVVG
FT                 ETSSNVKAKLATVQQRGKTATQFTAEVDSLRKLLEASYIDEGIPLEHATGL
FT                 STKEAIETMIHRAEHESIKTVLEAGTCTTMDAAISAYIRTSTRVTGDINKV
FT                 MYFRGNRPNRGYGNANRGSNRRRGFNNNSIRGNYHNGYQNNGYQNNGYQNN
FT                 GYQNRYNGNNNRYNGYNRGRYNGNRGRNNSQNNYNRNNANVRVIQEQGNSQ
FT                 QPLGTQ"
FT   CDS           2566..6276
FT                 /product="DM412_I_2p"
FT                 /translation="QQSEQLQQKQCQCTSNPRTGQLATAFRYSVEEDRRVY
FT                 TINYNLNIFSTFIHAKTGVKLVFLLDTGADISILKENSDKFSNIQITNKIN
FT                 IQGIGQQKIQSRGQTFIEIQTGKYVIPHDFHLVDKNFPIPCDGIIGIDFIK
FT                 KYNCQIDLNQEEDWFIIRPNNLKFPIYIPIAYSSGINTTLLPARSQVVRRL
FT                 IVSSKDDNILIPNQEIQTGIYVANTIATSSNTFVRILNTTDSDQLVNMDTL
FT                 KYEPLSNYNVVQANSEHRNKTVLSQLKKNFPELFKSQLENICSEYIDIFAL
FT                 ESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIV
FT                 EPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRID
FT                 DILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFG
FT                 LKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGK
FT                 CREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDA
FT                 DSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLK
FT                 SQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAF
FT                 TKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNP
FT                 SSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDITGNILKVT
FT                 TRFQSRQKSCAGKEQLDLQKQTKEIASEPNVYEVITNDEVRKVVTLQLNDS
FT                 ICLFKHGKKIIARYDVGDLYTNGILDLDQFLQRLELQAGIYDISQIKMAPW
FT                 KKIFEHVSIDKFKNMGNKILKNLKVALLNPVTQINNEKEKEAILSTLHDDP
FT                 IQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM
FT                 TITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKS
FT                 AKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTA
FT                 HHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHN
FT                 YCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKL
FT                 LEAHKEKNKENYDLKVKDIELEVGDKVLLRNEVGHKLDFKYTGPYKIESIG
FT                 DNNNITLLTNKNKKQIVHKDRLKKFHS"
XX
SQ   Sequence 6477 BP; 2619 A; 1123 C; 1108 G; 1625 T; 2 other;
     tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga aaacaaagga        60
     acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc aaaaaccaag       120
     gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc ggtttgaaaa       180
     ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag caaacgccac       240
     cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg caatatcagc       300
     aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa aatataccca       360
     caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca ttaacaaaac       420
     caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc ctggggactt       480
     gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg gagtgtcagc       540
     gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag cagaatataa       600
     taataaatat atataaatat aaagtaaata taaaatatat atagataaga aaaattgtaa       660
     gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat ggcccgtgaa       720
     gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt actcttgcga       780
     acattgaaag attttataaa tagataattc caaacataaa tgtctataga gacaaatgaa       840
     ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta ttctccaaaa       900
     tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga ctctacagcc       960
     aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac cataatacta      1020
     attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa actgcataac      1080
     aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat ttaaggaaga      1140
     tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa aaaaaaaata      1200
     ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa aaaaaaatat      1260
     atacaaatga ataaatttga agttatgagt ataccacagc atggactggg aaaagcttgt      1320
     tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct taacgcaaaa      1380
     cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa atagttataa      1440
     tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac agtgtgctaa      1500
     ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa ataaattcag      1560
     tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt tgaatgaaga      1620
     cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta aagaggaaga      1680
     tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata aaacaaataa      1740
     cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca ttaggtctta      1800
     cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc atttacaaag      1860
     attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag acattgcagt      1920
     tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca atgaaacgac      1980
     aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat ccagtaatgt      2040
     caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat ttaccgctga      2100
     agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta tacctctaga      2160
     acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc gtgctgagca      2220
     cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg cagcgataag      2280
     cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga tgtactttag      2340
     aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc gccgtagagg      2400
     ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata acggttacca      2460
     aaataacggt taccagaata acggttatca aaaccgctat aatggaaata ataaccgtta      2520
     taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca gtcagaacaa      2580
     ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact cgcaacagcc      2640
     tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa tctcaacata      2700
     ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact tgatacaggt      2760
     gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca aataaccaat      2820
     aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca gacttttatt      2880
     gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga taaaaacttt      2940
     ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa ttgccaaatc      3000
     gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa atttccaata      3060
     tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc aagatcccaa      3120
     gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc aaaccaggaa      3180
     attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac atttgtccga      3240
     attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa atatgagcca      3300
     ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac tgtcttatct      3360
     caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat atgcagcgaa      3420
     tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt gtataaacaa      3480
     cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag tcctcatagt      3540
     caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat agttgaacca      3600
     tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag cccgaattct      3660
     gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa acttttagct      3720
     gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg agcaaaatat      3780
     ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga aggctcgaga      3840
     gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt gccatttggc      3900
     ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc cggaatagaa      3960
     ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc cgaaaaacat      4020
     atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct aaagttacat      4080
     cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa atgcacagac      4140
     aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc agttccacat      4200
     gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg ttttatcaaa      4260
     aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt tccattcgag      4320
     tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat taacccaaca      4380
     ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc aagcaagcaa      4440
     gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt tgcttatgca      4500
     tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga gttagcagca      4560
     attcattggg caataataca tttcagacca tacatttacg gaaaacattt cactgtgaaa      4620
     acagaccata gaccattgac atatttattc tcgatggtga accccagctc taaattaact      4680
     agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa gggcaaggac      4740
     aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga tataactgga      4800
     aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc aggaaaagaa      4860
     caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt atacgaagtc      4920
     ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc gatatgttta      4980
     tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta tactaatgga      5040
     attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat atatgatatc      5100
     agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat agataaattt      5160
     aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa cccggtgacc      5220
     caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga tgatccaata      5280
     caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca ttattactgg      5340
     aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg ccaaaaagca      5400
     aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga acatgctttc      5460
     gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg taacgagtac      5520
     gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat agcaaataaa      5580
     agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta cggtccaatg      5640
     aagacgttca taacggacat gggaacagag tataagaatt caataattac tgacctgtgt      5700
     aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac agttggagta      5760
     gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc gacggacaaa      5820
     accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac ccaatctatg      5880
     gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt accaaaacat      5940
     tttaataaac tacatagcat agaaccaata tataacatag atgattacgc taaggagagt      6000
     aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc acacaaagaa      6060
     aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt aggagataaa      6120
     gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg gccctataag      6180
     atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa caaaaaacaa      6240
     atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa cttatatttt      6300
     ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt gcattataaa      6360
     atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat aaaataattt      6420
     gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg agggaga         6477
//
ID   DM412_LTR   repbase;    DNA;    INV; 481 BP.
XX
AC   M30371;
XX
DT   20-APR-2000 (Rel. 5.03, Created)
DT   20-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   DM412_LTR is a long terminal repeat from the 412 LTR
DE   retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DM412_I;
KW   DM412_LTR; Gypsy superfamily; T412LTR; TABOR clade; Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-481
RA   Shepherd M.B. and Finnegan J.D.;
RT   "Structure of circular copies of the 412 transposable element
RT   present in Drosophila melanogaster tissue culture cells, and
RT   isolation of a free 412 long terminal repeat.";
RL   J. Mol. Biol 180, 21-40 (1984).
XX
DR   GenBank; M30371; Positions       1     481.
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   Dmacul5     repbase;    DNA;    INV; 495 BP.
XX
AC   GU229978;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mauritiana subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dmacul5.
XX
OS   Drosophila maculifrons
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   guarani group; guaramunu subgroup.
XX
RN   [1]
RP   1-495
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229978; Positions       1     495.
XX
CC   Clone Dmacul5.
XX
SQ   Sequence 495 BP; 161 A; 127 C; 118 G; 89 T; 0 other;
     tgggtgccgc acgagctgaa accaagagac attgaaaggc gattatgcat tgctgaacaa        60
     actgcttgca agacaacaaa gaaagggttt tttgcaccga attgtgacag gggatgaaaa       120
     gtggatccat tacaacaacg aaacccggcg caaatcttgg ggtaagcccg gtcacaaagc       180
     agtatccact ccgaaaccca atttccatgg aaccaaggtt atgctctgtg tttggtggga       240
     ccagctaggc ccgatccact acgaattgct gaaacagggg ccagactatc aacggggagc       300
     tctaccgaca acaattgagc cgtctgagcc gggcactcaa agaaaaaagg ccacaattcg       360
     aagaaaggca cgacaaagtc atccttcagc aagacaatgc aagaccacac accagcagag       420
     tggtcaaaga ttacctcaac gagctgaaat gggagatttt gccccacccg ccatactcta       480
     ccagatcttg cacca                                                        495
//
ID   DMCR1A      repbase;    DNA;    INV; 4470 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   DMCR1A is a non_LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   CR1 superfamily; DMCR1A.
XX
NM   DMCR1A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4470
RA   Kapitonov V.V. and Jurka J.;
RT   "DMCR1A.";
RL   Direct Submission to Repbase Update (31-MAR-2000).
XX
DR   [1] (Consensus)
XX
CC   DMCR1A belongs to the CR1 superfamily of non-LTR
CC   retrotransposons.
CC   It has two ORFs. ORF1 encodes a putative nucleic acid binding
CC   protein
CC   which includes the zinc-finger domain and is distantly similar to
CC   a protein encoded the non-LTR retrotransposon T1_AG in
CC   African malaria mosquito. ORF2 encodes reverse transcriptase
CC   close
CC   to RT from T1_AG and CR1.
CC   ORF1:
CC   METVNVVCFYKNCCQVIKPEQPKMTCWLCDRMVHTKCAGFNGRTSDDLAKGKNLNYCCDACLVVANEMKS
CC   FMRQTKGGLKELINSFGVARDSFRRADDLLSALNSQFNGLKLLDESPKRKKAAGGRLPKAPQPRANDQQD
CC   STTDQLSIAANPHMLLRSAAKKDSEQSDQSAVEGAHPVIAKDSELSALVSQPVIPPVSISLPPQGNIESG
CC   LPAQVGTSEIQSAGPKPLAVVPLKKQIFVSRLSPDQTSSDVLSYIQDKTKADNIKVEKFNFSYARDISSF
CC   KITVPNELFSTICSGDFWPDSMVVKEFEAKIKNRKKGPVGIKLPSRGQTTAPSASSSSSSSKN
CC   ORF2:
CC   TSLTWPDHCTIRLFIFFLFKKLTTNLTISYQNVRGLRSKLTKLYCDSLSFASHIIVFTETWLKPEILNSE
CC   VFPGMYTIYRYDRPSRRGGGVLIAVRSTLASEELLLDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEFP
CC   EYQNHLSAIQSILNKLSDRDQLVVLGDFNIPGTMWSPEKQSNILLPLAQHDFIDGLLDLSLSQVNYIPNS
CC   LGRLLDLCFVTSPESVFLSRVAPLTQPEDPYHPTFEVAIDIGTVLKVNSEKSTKRIPCFRKANFRRLNNF
CC   IAGFNWSDLYSCNIMADAINMFYTAIKSFFDSCVPMYYPSISKPPWFNKELTHLRNVKSRLYIKFKNTGS
CC   QSILCKYLSARLNFTVLNAQCYKNYLNRCKFQFAQDPKQFYNFVSTKRKTSSYPSSLFFENTTVTSDQAI
CC   ADLFAKFFQTTYSTLPHSEQPYSYAVSKSNLIFCPTINESSLLNDLQRVKPVYSPGPDGIPGCVLRFCAE
CC   ALCKPLLKLFTLSLESSQFPHIWKESFVIPLHKKGSKLDASNYRGISKLSAIPKLFENVITPHLQHLCRS
CC   IISPCQHGFMKRRSTTTNLLELTSFVIQGFKNNLQTDVIYTDFSKAFDSVNHYLLIRKLDLLGFPVDLLN
CC   WISSYLNGRTQQVLFKNSLSCILRVTSGVPQGSHLGPLLFTLFINDLPLIIKHSRVLMYADDVKLCLQHK
CC   DTSCHLDLQSDLDRFQIWCRDNVLDLNGSKCKVMTFCRANPIRTTYTLSGCSLDRITRVDDLGVLLDPKL
CC   KFSDHISSIVNKARGVLGFIKRWSKEFDDPYLTKTLFISLVRPILEYGSPVWSPQYAVHSDRIESVQKNF
CC   LLFALRRLNWDANRILPPYSSRLLLINLPSLANRRTMLGTVFICKLIRGDVESPDLISRLNFSVPSRFTR
CC   NYIPLILNHCRSNYELHDPYRVLCSDYNRLYPIICNLDSLPLLKQSILTFLLHN
CC   There are ~1000 copies of DMCR1A fixed in the genome; they are
CC   ~95% identical to the consensus sequence; DMCR1 has a strong bias
CC   for 5' truncations.
XX
FH   Key           Location/Qualifiers
FT   CDS           435..1463
FT                 /product="DMCR1A_1p"
FT                 /translation="METVNVVCFYKNCCQVIKPEQPKMTCWLCDRMVHTKC
FT                 AGFNGRTSDDLAKGKNLNYCCDACLVVANEMKSFMRQTKGGLKELINSFGV
FT                 ARDSFRRADDLLSALNSQFNGLKLLDESPKRKKAAGGRLPKAPQPRANDQQ
FT                 DSTTDQLSIAANPHMLLRSAAKKDSEQSDQSAVEGAHPVIAKDSELSALVS
FT                 QPVIPPVSISLPPQGNIESGLPAQVGTSEIQSAGPKPLAVVPLKKQIFVSR
FT                 LSPDQTSSDVLSYIQDKTKADNIKVEKFNFSYARDISSFKITVPNELFSTI
FT                 CSGDFWPDSMVVKEFEAKIKNRKKGPVGIKLPSRGQTTAPSASSSSSSSKN
FT                 "
FT   CDS           1400..4291
FT                 /product="DMCR1A_2p"
FT                 /translation="TSLTWPDHCTIRLFIFFLFKKLTTNLTISYQNVRGLR
FT                 SKLTKLYCDSLSFASHIIVFTETWLKPEILNSEVFPGMYTIYRYDRPSRRG
FT                 GGVLIAVRSTLASEELLLDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEF
FT                 PEYQNHLSAIQSILNKLSDRDQLVVLGDFNIPGTMWSPEKQSNILLPLAQH
FT                 DFIDGLLDLSLSQVNYIPNSLGRLLDLCFVTSPESVFLSRVAPLTQPEDPY
FT                 HPTFEVAIDIGTVLKVNSEKSTKRIPCFRKANFRRLNNFIAGFNWSDLYSC
FT                 NIMADAINMFYTAIKSFFDSCVPMYYPSISKPPWFNKELTHLRNVKSRLYI
FT                 KFKNTGSQSILCKYLSARLNFTVLNAQCYKNYLNRCKFQFAQDPKQFYNFV
FT                 STKRKTSSYPSSLFFENTTVTSDQAIADLFAKFFQTTYSTLPHSEQPYSYA
FT                 VSKSNLIFCPTINESSLLNDLQRVKPVYSPGPDGIPGCVLRFCAEALCKPL
FT                 LKLFTLSLESSQFPHIWKESFVIPLHKKGSKLDASNYRGISKLSAIPKLFE
FT                 NVITPHLQHLCRSIISPCQHGFMKRRSTTTNLLELTSFVIQGFKNNLQTDV
FT                 IYTDFSKAFDSVNHYLLIRKLDLLGFPVDLLNWISSYLNGRTQQVLFKNSL
FT                 SCILRVTSGVPQGSHLGPLLFTLFINDLPLIIKHSRVLMYADDVKLCLQHK
FT                 DTSCHLDLQSDLDRFQIWCRDNVLDLNGSKCKVMTFCRANPIRTTYTLSGC
FT                 SLDRITRVDDLGVLLDPKLKFSDHISSIVNKARGVLGFIKRWSKEFDDPYL
FT                 TKTLFISLVRPILEYGSPVWSPQYAVHSDRIESVQKNFLLFALRRLNWDAN
FT                 RILPPYSSRLLLINLPSLANRRTMLGTVFICKLIRGDVESPDLISRLNFSV
FT                 PSRFTRNYIPLILNHCRSNYELHDPYRVLCSDYNRLYPIICNLDSLPLLKQ
FT                 SILTFLLHN"
XX
SQ   Sequence 4470 BP; 1225 A; 982 C; 828 G; 1435 T; 0 other;
     ttggctttca aagcgaacgg tcgttttttt ttgcgccccg atttttattt tgtgtttgcc        60
     aaaccagccg tggtttttaa taatcttctt taattatcat atattttaaa cataattatt       120
     aaagatccgt tcgcttcgcg agtgattctt tgtgatttgt gcagtagttt aaacaaatat       180
     acaaagtatt ttgcattttt cgtctttgtg ttttgtttac tctccctttt gtgcgttgtt       240
     cgcagtgctg tttggtgttg ttttttgcat gcacataaac tgcacttttc gctctcactc       300
     tctcgctctt tcgctctccc acacaaaatc taaatttctc agcgtgcaga ctgctctcgt       360
     gcggttcttt taacagctcg cttgaaagtt ttgatcttgt gttttcgtgc acagtggtct       420
     gattttagat aaacatggaa accgtaaatg ttgtctgctt ttataaaaat tgttgccagg       480
     ttataaaacc tgagcagcca aaaatgactt gttggctatg tgatagaatg gtgcatacta       540
     agtgcgctgg ttttaatggc cgtacaagtg atgacctagc aaagggtaaa aatctaaatt       600
     actgttgtga tgcttgcctt gtggttgcga acgagatgaa atcgtttatg cgccaaacta       660
     aaggtggctt gaaagaactg atcaacagtt ttggcgtagc tagagatagt tttcgtcgag       720
     ccgatgatct tctttccgcg cttaattcac agtttaatgg ccttaagcta ttagatgaat       780
     ctccaaagcg caaaaaagcc gctggtggta ggctgcctaa ggccccgcaa ccacgggcaa       840
     atgatcaaca ggactccaca actgatcagc tgtcaatcgc agcaaatccg catatgttgc       900
     taagatcggc agctaaaaaa gattcggagc aatccgatca atccgctgtg gagggagccc       960
     accctgtgat tgctaaagat tccgaattgt ctgcactggt ttctcaacca gtgattccac      1020
     ctgtctcgat tagtttacca ccacaaggga acattgagtc cggactaccg gcacaagttg      1080
     gcacttcaga aatacaatct gcagggccaa aacccctcgc ggtggttcca ctaaagaaac      1140
     aaattttcgt ttctcggctt tcccctgatc aaacatcgtc tgatgtattg tcttatatac      1200
     aagacaaaac aaaagccgat aatataaaag tggaaaaatt taacttctct tacgctaggg      1260
     acatatcatc tttcaagata actgtcccaa acgagctttt ttcgaccata tgttcgggtg      1320
     atttttggcc ggatagtatg gtggtaaaag agttcgaagc taagatcaaa aataggaaaa      1380
     aggggcccgt gggaattaaa cttccctcac gtggccagac cactgcacca tccgcctctt      1440
     catcttcttc ctcttcaaaa aactaacaac gaatcttact atctcctatc aaaatgttag      1500
     aggcttgcgt agcaaattaa ccaaattgta ttgtgatagt ctttcatttg catcccatat      1560
     aatagtgttc acagagactt ggttaaagcc ggagatactt aactccgaag tcttcccagg      1620
     tatgtacact atatataggt atgaccgtcc ctccagacgg ggaggtggag tcttaattgc      1680
     ggttagatct accctcgcgt cggaggagtt acttttggac gaatcccgta actcggaatt      1740
     cttatgcgta aagctgtctt tttccgacag atcagtttat attacgtgct cgtatattcc      1800
     gccatcttct gaattcccag aatatcagaa tcatctgtcc gctatccagt ccatcttgaa      1860
     taaactgtct gacagggacc aattggtagt tctaggtgat tttaatatac ctggcacaat      1920
     gtggtcccca gaaaaacaat cgaatatcct tctcccttta gcacaacatg actttattga      1980
     cggcttgctc gacttatcgt tgtcgcaagt taattatatt ccaaactctc ttggtcgact      2040
     gttggatcta tgttttgtaa caagtcctga aagtgtgttt ctgtccaggg tagcacctct      2100
     tactcaacct gaagatccat atcatcctac tttcgaggtg gcaatcgaca taggtacggt      2160
     attaaaagta aattcagaga agtcaacaaa gcgaattccc tgttttcgca aggcaaattt      2220
     tcggaggcta aacaatttta tagctggctt taattggtcc gatctttact cctgcaacat      2280
     aatggcggat gcgattaata tgttttatac cgcaattaaa tcattttttg actcttgtgt      2340
     tccgatgtac tatccgtcaa tctctaaacc tccttggttt aataaagagt tgacacacct      2400
     aagaaatgta aagtccagac tctatataaa atttaaaaat accggttctc agtccatcct      2460
     ttgtaaatat ttaagcgctc ggttaaactt taccgtgctt aatgctcagt gctacaagaa      2520
     ttatttaaac cgttgtaagt tccagtttgc acaggatccg aaacagtttt ataatttcgt      2580
     tagcactaag cgaaaaacaa gttcttaccc ttcctcgcta ttttttgaaa acactacggt      2640
     aacatcggat caggcaatag ccgatctatt cgccaagttt tttcaaacaa catattcaac      2700
     tttacctcat tccgaacagc catactctta tgcggtatct aagtcgaatc taatattttg      2760
     ccccactata aacgaaagct cactgcttaa cgatcttcag cgtgttaaac cggtctattc      2820
     gccaggtccc gatggaatcc ctggctgtgt gctcagattc tgtgcggaag ccttgtgcaa      2880
     gcctctactg aaactgttta ccttatctct ggaatcttca caattccctc atatatggaa      2940
     ggagtccttt gtgattcctc ttcataaaaa aggtagcaaa ctggatgcaa gcaattacag      3000
     aggaatctct aaattgtcgg ctatcccaaa actttttgaa aatgttatca ctcctcattt      3060
     gcagcacctt tgtagatcaa tcatatcacc gtgtcaacac ggttttatga aacgcagatc      3120
     aacaaccact aacctcttgg agctaacttc tttcgtaata cagggtttca aaaataatct      3180
     tcaaacagat gtcatctaca ctgattttag taaagcattt gactctgtta atcattacct      3240
     tctaataaga aaacttgatc ttttaggttt ccctgttgat cttctaaatt ggatttcaag      3300
     ctatctgaat ggcaggacac aacaagtcct ctttaaaaat tctttatctt gtattctccg      3360
     agtcacatcc ggtgtcccac aagggagcca tcttggtccg cttcttttta ccttattcat      3420
     taacgacctc cccttaataa taaaacattc gcgtgtactt atgtacgcag acgatgttaa      3480
     attatgcctc cagcacaagg acacttcgtg ccatttggac ttacaatccg atctagaccg      3540
     atttcaaata tggtgccgtg ataacgtatt agacttaaat ggctccaagt gtaaagttat      3600
     gaccttttgt cgtgccaacc caatacgcac gacttacact ctaagtgggt gctctttgga      3660
     cagaataaca cgagttgatg atcttggtgt tcttctggac cctaaactaa aattttctga      3720
     ccatatttcg tctattgtca ataaggccag gggtgtgctt ggttttataa aaaggtggtc      3780
     taaggaattt gatgatcctt acttgactaa aaccttattt atttcgttag tccgtccgat      3840
     tctcgagtac ggatcacctg tttggagtcc acaatacgca gtccactcgg accgcattga      3900
     atcggtccaa aaaaacttct tactttttgc cttgcggcgc ctaaattggg atgcaaaccg      3960
     tatattacct ccttattcca gtagactact tttaattaat ttaccgtccc tagctaaccg      4020
     tagaactatg cttggaacag tctttatttg taagcttatt cgtggggatg ttgagagtcc      4080
     cgacttgatt agtcggctta acttctcggt tccaagtaga ttcactagaa actatatacc      4140
     ccttatctta aatcattgta gatctaacta tgagttgcat gacccttaca gagttttatg      4200
     ttctgactat aatagacttt atcctattat ctgtaatctt gactctctgc cgctcttaaa      4260
     gcaatcgatt ttaacttttt tattacataa ttagatccta ctaacactaa tatttaatat      4320
     agttatttta cattatattc atttcctcgt tcctgttctc ttttttatat cgcgtctata      4380
     tcttctcgcg aatcgagccg tacgatacac ggcagcgccc ctcggtcggt tgggcgggag      4440
     gtgtggccgt gggacccgtg cgaaaaaaaa                                       4470
//
ID   Dmedpu1cons repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mauritiana
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dmedpu1cons.
XX
OS   Drosophila mediopunctata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup II.
XX
RN   [1]
RP   1-492
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
CC   Dmedpu1cons.
XX
SQ   Sequence 492 BP; 141 A; 117 C; 126 G; 108 T; 0 other;
     tgggtgccgc atgaactgaa gccaagagac gttgaacgcc gttttatggc atgcgaacaa        60
     ctgcttcaac ggcacaaaag aaagggtttt ttgcatcgaa ttgtgactgg cgatgaaaag       120
     tgggtccatt acgacaatcc aaaacgtcgg gcaacgtatg gataccctgg ccatgcttca       180
     acatcgacgt cggcgcagaa tattcatggc ctgaaggtta tgctgtgtat ctggtgggac       240
     cagctgggtg ttgtgtatta tgagctactg aaaccgaatg aaacgattac gggggatgtc       300
     taccgacgac aattgatgcg tttgagccga gcactgcgag aaaaacggcc gcaatacgcc       360
     gatagacacg acaaagttat tttgcaacat gacaatgctc ggccacatgt tgcacaagtg       420
     gtcaaaacat atttagaaac gctcaaatgg gatgtcctac cccacccgcc gtacacaccc       480
     gacctagctc ca                                                           492
//
ID   Dmedpu27    repbase;    DNA;    INV; 317 BP.
XX
AC   GU229976;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of irritans subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dmedpu27.
XX
OS   Drosophila mediopunctata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup II.
XX
RN   [1]
RP   1-317
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229976; Positions       1     317.
XX
CC   Clone Dmedpu27.
XX
SQ   Sequence 317 BP; 111 A; 68 C; 61 G; 77 T; 0 other;
     ccaaattttt gagtcaattt ataaccatgg atgaaacttg gattcattac tacacttcta        60
     aatcaacgca acaggcaaaa cagtgtgttc cgccgggcca aagtgcttcg aagcgtccaa       120
     aaacgcaaca atgggccgga aaggttatgc ctccgtattt tgggatgcac atggcataac       180
     atttgtggac tatcttgaaa aaggtaaaac cataaccgga gcatactatt catcattatt       240
     cgaccgattg acaatcgaaa ttgccgaaaa acgacagcat ttgaagaaga aaaacccgat       300
     ttatcatcac gacaatg                                                      317
//
ID   Dmedtr1cons repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dmedtr1cons.
XX
OS   Drosophila mediostriata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup III.
XX
RN   [1]
RP   1-491
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Dmedtr1cons.
XX
SQ   Sequence 491 BP; 121 A; 121 C; 139 G; 110 T; 0 other;
     tttgggtgcc gcacgagttg acggaaaaaa acatttttgc ccgtatggat gcatgcgaat        60
     cgcttctgaa tcgcaacaaa atcgacccgt ttttgaagcg gatggtgact ggcgatgaaa       120
     agtggatcac ttacgacaac gtgaagcgca aacggtcgtg gtcgaaaagg ggtgaagctg       180
     cctagacggt ggccaagcct ggattgacgg ccaggaaggt tcttctgtgt gtttgctggg       240
     attggcaggg aatcatccac tatgagctgc tgccctatgg ccagaccctt aattcggacc       300
     tgtactgcca acaactggac cgcttgaatg cagcactcat gcagaagagg ccatctttga       360
     tcaacagagg acgaattgtc tttcatcagg acaacgccag gccgcacaca tcttttgtga       420
     cgcgccagaa gctcggggag ctcggatggg aggttctttt gcatccaacg tactggcccg       480
     acctagcccc a                                                            491
//
ID   DMHMR1      repbase;    DNA;    INV; 965 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 3)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family) - a consensus.
XX
KW   DMHMR1; HMR repeat family; Heterochromatic moderate repeat;
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Shevelyov Y.Y., Balakireva D.M. and Gvozdev A.V.;
RT   "Heterochromatic regions in different Drosophila melanogaster
RT   stocks contain similar arrangements of moderate repeats with
RT   inserted copia-like elements (MDG1).";
RL   Chromosoma 98(2), 117-122 (1989).
XX
RN   [2]
RP   1-965
RA   Jurka J.;
RT   "DMHMR1.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 965 BP; 229 A; 222 C; 249 G; 256 T; 9 other;
     tcacgtcatc cctagaagaa cattgaagcg cttgacttcg gaatgccgga gcgaggagga        60
     ggactagctg gccgaggatc cgatattctt tggtgaggac ttgggcgatt tgagtggcat       120
     caaggccttc tggtgcaacc gaaagcatag ggactgcaag tgcaagcgct ttgtttagaa       180
     aacaaccagg actatattcg gagaattact taccgtgggt cgtccagggg cggtctcaag       240
     ttcggcagct gcgttaagaa gatgtccggg aagctgggcc cgaacatggc tgtgtatcag       300
     ttttaggatg gaagtagttt ttacagcgtg ggcagtagat cttcacggtt gacttgcccc       360
     acacatcgct gaggcccact ggcagggtgt tctgcctatt acaggagata ttsggacacg       420
     attcaaagtc tcctctcata tactttcggt gcatatcatt cacgccacgc tccgacctga       480
     tgtatcgggc gtgaatcatg ccgtaccact ttttctcatc gycgtagaac aagcccgagg       540
     aactgtcgaa caccggcttc aggatcacgt ccagtgctgg ctgaagtact ccargcccat       600
     ctggttgaac gtgtcctgaa agtagtcggt gggcacgcgg cagaggaact cgttgccctt       660
     gattccgagg aaccaatyga tccagctgct gttgttgttg ttgttctggc tacaagattt       720
     tactgtgact tgctataatt tctataggaa aaacctagtt acttacgagc tcgacatgtt       780
     gccagttcac ttgttcacag aaatatgact tgtagacttc aaagtcatcg tcttcttctt       840
     tgagtttttg acacgtgcta aaaggcctgc caggaccaaa gacactaraa taayaagatg       900
     cataacgcca tacgattttt tcgycgtggc tcnagnggtg gctccaggct ctctcgaatt       960
     tttgt                                                                   965
//
ID   DMHMR2      repbase;    DNA;    INV; 1212 BP.
XX
AC   M37704; M37705; M84197; M84198; U06947;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.melanogaster Heterochromatin repeat.
XX
KW   DMHMR2; repeat; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1212
RA   Danilevskaya O., Slot F., Pavlova M. and Pardue L.M.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres.";
RL   Chromosoma 103(3), 215-224 (1994).
XX
RN   [2]
RP   1-1212
RA   Valgeirsdottir K., Traverse L.K. and Pardue L.M.;
RT   "HeT DNA: a family of mosaic repeated sequences specific for
RT   heterochromatin in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 87(20), 7998-8002 (1990).
XX
RN   [3]
RP   1-1212
RA   Pardue L.M.;
RT   "DMHMR2.";
RL   Direct Submission to Genbank (19-FEB-1994)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Ave., Cambridge, MA 02139, USA.
XX
DR   GenBank; U06947; Positions    3613    4824.
XX
SQ   Sequence 1212 BP; 371 A; 320 C; 262 G; 259 T; 0 other;
     aagcttagat atagagccac caaccgctct gaaatactgg aaagaagcat ttcccctcac        60
     caaggatgct tcttaacgct catctgctca gttgattcaa atttaaatcc taacattagc       120
     gccatgacca ctgtggagaa tttaccagca gccagcacac ttagccgacc tgctgcaaag       180
     cgggatttat ttacgagcac cctatgagtt tttcggaagt ggtagctgga gcaggtccag       240
     tttctgtggc accctctaac ccggcaccac tgacgaaaac tccaggcaag cggacaaatg       300
     aagatctgga ttgctcaaat tttaagacgc caataaaaaa tgatgcgcga catccaattt       360
     tgtaactccc tgcatttttc ccccgctcat cacacccgtt ttcaaaagca aggcagctca       420
     atctgtttat aaggaatcaa agccagaaat ggacccccca ccagccgtta cctgtagcaa       480
     caatgtctct gcttgcagcg aggcgcaccc gggattgccc ccctaccccc tcaaaataca       540
     gatatagctg ccaccatgga aaatcgtacc caagagccgt agagcacccc ctattctagc       600
     taacgacgtg aaggaaattg tcccgctgct ggaaaagctg aactacacag caggtttatc       660
     cagctacacc accagggcaa tagatgggaa tggggtcagg atccaggcca aggatatgac       720
     tgccttcaac aaaattaaag aagtcctggt ggcaaacggc tttccattat tcaccacatc       780
     agcccaagaa tgagagaggc ttccgagtcg tcatcagaca ctcatcattc acactatgct       840
     cggggatagt cgaggagctg ctgaaactcg gatctccaag cgacgctgcg tcagaaatat       900
     gacgaatcag ctacaggtgg ccccatgcga atgtataaag ttgagatcgt catggccaag       960
     gatggtagtc atgaaaaaat tatctcactc aaacaaatcg tgggcaaagg tggatattga      1020
     aaggaaaaac aggacacgga gccaaaaact cttgcatgaa gccaccaaga tgcatgaaat      1080
     gcgctggcga tcacctatca tcctgttgca ccaagccaag atccacccct gccacatgca      1140
     tcaactgctc tggaaatgag cattagtgct tacaaaggat gcctcgttta tagggccgaa      1200
     aaacaaaagc tt                                                          1212
//
ID   DMLTR5      repbase;    DNA;    INV; 266 BP.
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   22-JUN-1999 (Rel. 4.05, Last updated, Version 2)
XX
DE   DMLTR5 is an long terminal repeat from HMSBEAGLE Gypsy-like
DE   retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DMLTR5;
KW   Gypsy superfamily; HMSBEAGLE_I; LTR; retrotransposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   266-1
RA   Snyder P.M., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.
RA   and Davidson N.;
RT   "A transposable element that splits the promoter region
RT   inactivates a Drosophila cuticle protein gene.";
RL   Proc. Natl. Acad. Sci. U.S.A 79(23), 7430-7434 (1982).
XX
RN   [2]
RP   1-266
RA   Kapitonov V.V. and Jurka J.;
RT   "DMLTR5.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; J01078; Positions     313      48.
XX
CC   DMLTR5 flanks HMSBEAGLE Gypsy-like retroelement [1,2]. Original
CC   orientation [1] of the LTR has been changed after identification
CC   of the internal portion HMSBEAGLE_I [2].
XX
SQ   Sequence 266 BP; 68 A; 69 C; 55 G; 74 T; 0 other;
     agttattgcc ctgcaattga ttctctaaca tcttgtggtt ccacatagtc tccgctgcca        60
     tcaacgccaa cgaacggtta agcgcgacat cgacacttct gcgctgcgcc gcggccgacg       120
     cctgctgcgc cactgccgac gacttcactt gattgctagg gacttaggga aacattttgt       180
     acgctagatt tagtttcgaa tgataaattg caataaacgg tcgcttgcga tcttcaaaat       240
     caaatcgata actgtaatta ttaact                                            266
//
ID   DMRP1       repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   30-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat (a consensus).
XX
KW   DNA transposon; Transposable Element; DMRP1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-314
RA   Jurka J.;
RT   "DMRP1.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
RN   [2]
RP   1-314
RA   Bao W.;
RT   "Update the consensus.";
RL   Direct Submission to Repbase Update (14-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   It seems has a short TIRs. >80% identical to the consensus.
XX
SQ   Sequence 314 BP; 83 A; 79 C; 50 G; 102 T; 0 other;
     cactcagaga aaaaaccgtt ctcaacgatc tcgatttgag aatttcgatc tcaaaatcta        60
     gccaagatcg aatcatgctc agatcgagat cgaaccattc tcagattgca aatgactttg       120
     ctctcatttg tctctctctc tctctctccc tcttccacaa tcttaaaccc gatactgctt       180
     ccgtctgaaa atatcaacat tgagatcgtt ttcgtctcga aatcaagaag gtttcttctc       240
     atgagaatga ttgatgccac tgagtacgct gagcacaacc gatctcggtt tttttttctc       300
     aatttttctg ggtg                                                         314
//
ID   DMRT1A      repbase;    DNA;    INV; 5183 BP.
XX
AC   .
XX
DT   28-JUN-2000 (Rel. 5.05, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   DMRT1A is a non-LTR retrotransposon, a consensus sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   RT1; DMRT1; DMRT1A; Waldo-B.
XX
NM   DMRT1A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5183
RA   Kapitonov V.V. and Jurka J.;
RT   "DMRT1A.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
RN   [2]
RA   Busseau I., Berezikov E. and Bucheton A.;
RT   "Identification of Waldo-A and Waldo-B, two closely related
RT   non-LTR retrotransposons in Drosophila.";
RL   Mol Biol Evol 18(2), 196-205 (2001).
XX
DR   [1] (Consensus)
XX
CC   DMRT1A belongs to the R1 clade of non-LTR retrotransposons. It
CC   has two ORFs. ORF1 encodes a putative nucleic acid binding
CC   protein. This protein is most close to the proteins encoded by
CC   ORF1s in the I elements found in Drosophila melanogaster and
CC   Drosophila teissieri. However, its reverse transcriptase encoded
CC   by ORF2 is most close to the reverse transcriptase encoded by
CC   RT1, RT2 and SART1 non_LTR retrotransposons found in Anopheles
CC   gambiae and Bombyx mori. There are ~20 copies of DMRT1A
CC   fossilized recently in the genome; they are ~97% identical to the
CC   consensus sequence. DMRT1A copies are flanked by ~12-bp target
CC   site duplications. This element does not seem to have a strong
CC   site specificity as it was found for other R1-like elements.
CC   There are several young and divergent families of DMRT1 in the
CC   genome.
CC   [2] In this article, it is called Waldo-B.
XX
FH   Key           Location/Qualifiers
FT   CDS           443..1909
FT                 /product="DMRT1A_1p"
FT                 /translation="MDRTGGGSAPDPNDPFRRSGRLSRSPIRGVGTPIQGX
FT                 GGEQAGPPPPKASDCSAAVEVETLATTVSTTATSLKTMDFISVPAQRAGAK
FT                 SPSGSPHRSPELTTTLQNEDLQGILDMMKAKITAILSSFETRRHVTSEDRG
FT                 VLVDLSALNNRAIELQEGINKKPPPRSTATQTEAEKTKRSQVAPPRQALPN
FT                 VQVRKTDNHRSAAKSTGKALPTTADSKPESYASVAKDANKDEEWAKVKPKR
FT                 LRKKPEALILKKTGEVTYSDMLRKMKAEPSLTEFGKHVRKIRRTQQGELLL
FT                 ELEGKASEVIPSFKNELEATLKEIASVRTGAHRTALICSGLDETTTAQDLH
FT                 NSLVSQFQGIRLEPEDVRGLRRMRDGTQIASVLMCANDAIAVINRGVVTVG
FT                 WSRCRIAQDVRPIRCFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCV
FT                 APPRCLICSSDVDKNHATGGFACPTYKANTKGANSRQNDARRN*"
FT   CDS           1890..4859
FT                 /product="DMRT1A_2p"
FT                 /translation="MMPEEINIIQLNVNHCAAAQNLLTQTAKERHADVVLL
FT                 SEPYLPGVGNSGVLLDETGKAAIKCTSRLLVEEWDTVPMRGIAYAKIRGIH
FT                 FYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISN
FT                 TRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVTFVSRVLVASSNWM
FT                 VHEDITLSDHNLITFGARTMRPSPKQRRCALGPVWDIRKLDEDMLAYQIEG
FT                 MESIIGHAETMVTALMDRLRAMCDAVMPRKRNTKRKPPVYWWSDSLHQLRT
FT                 ECIKARRQAQRSRGQPHHSQCIEVYKAKRTELKNGISAAKANAFKDLIDSV
FT                 DDDPWGLAYKVVRKKLNSAGAGSPQDPAALANIVSELFPSQHTLWQPAVDP
FT                 PASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTF
FT                 QQCLLDGVFPKRWKKMKLVLLPKGKGPANVPRSYRPLCLLDIVGKLFERIL
FT                 YARIELITESPTGLQGQQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGS
FT                 KKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWY
FT                 VTEDGPRSHQVSAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDV
FT                 AITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEVVLLSSRKSVE
FT                 CMRVEVKGVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARI
FT                 MPNVGGPRLPARRLLVAVSKATLLYAAPIWSCVSTKKTYLDSARAVSRTMA
FT                 LRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYTQLEIKEWIRGVW
FT                 QTRWQESQRGRWTYKLIPQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCR
FT                 FRHVDTAQCLYCTDAVETAEHILLHCSRFAEERAQLVALAGSPLSPRGLVA
FT                 AMMADKIVWDGAHVIIVTMMKRVRKDEMANRNYR*"
XX
SQ   Sequence 5183 BP; 1428 A; 1327 C; 1416 G; 1009 T; 3 other;
     tcgagttccc gcgtatttcg cacgtctttt tgctgcgctg cgcgaatttc gtcatatacg        60
     agtccggtca gccgtaaact gcaacataaa cctgcaaatc cactctgggg tttgcgccgc       120
     gtttctgagc gtcacggtgt cgttccggaa ttcacgagtg atccagtaaa ctggtaataa       180
     atcagatcag ctgcatcaga caatacagct gatagcattg ccaacctttc gcagtcgacg       240
     agctggtaag actggcgttg ccagatcagc ggtgcgatcg tcattcggcc gcgcgctcgt       300
     tgggcgcgaa attcgaattc aaattcaaat ttgaactaat taagttgaac aaaaatttga       360
     aatataacct aagaactgaa gctagttcta tttcccacgg agcgctgggg accaacaagc       420
     caaagtcccc cttttatatc tgatggacag aacagggggg ggcagtgccc ccgaccccaa       480
     cgacccgttt aggaggagtg gtaggctatc gagatcccct ataagaggag tcggaacccc       540
     aatccaggga gkgggaggtg agcaagcagg ccccccgccg ccgaaagcta gcgactgcag       600
     tgcagctgtg gaggtggaga ctctggccac tacagtctcc acgacagcca caagcctgaa       660
     gacaatggat ttcatcagcg tgccggccca aagggcggga gcgaagtccc catcaggatc       720
     gccgcatcgc tcgccagaac tgaccacgac gctccagaat gaggacctgc agggcatcct       780
     ggacatgatg aaagccaaga tcaccgccat tctatcctcg ttcgagacta ggcgtcacgt       840
     aaccagcgag gataggggcg tgctagtgga cctatcggcg ctcaataaca gagcgattga       900
     gttacaggag ggtatcaaca agaagccccc accaaggagt actgccacac agactgaggc       960
     agaaaaaacr aagcgtagcc aggtggcgcc acccagacag gcattaccga atgtgcaggt      1020
     ccgcaaaacg gacaaccatc gatctgccgc gaaatccacc ggtaaggcgt tacccacgac      1080
     ggctgactcc aaaccggaaa gttatgcgtc tgtcgccaag gacgctaaca aggacgagga      1140
     atgggctaag gtgaagccca agcgcctgcg caaaaaacct gaggcgctaa tcctgaaaaa      1200
     aacgggtgag gttacgtact cggatatgct tcggaagatg aaagcagaac cgagtctgac      1260
     cgaattcggc aagcacgtgc gtaaaataag gaggacgcaa cagggagaac tacttcttga      1320
     attagaaggt aaagcctcgg aggtcatccc cagctttaaa aatgagctag aagcgacgct      1380
     caaagagatt gcttcggttc gcacgggcgc gcataggact gcgctaatct gcagcggact      1440
     agacgagaca acgacggctc aggaccttca taattccctg gtctcccaat ttcagggcat      1500
     ccgcctggaa ccagaggatg taagaggcct tcgcaggatg cgtgacggga cccagatagc      1560
     ctctgtgcta atgtgcgcga acgatgccat tgcggtcatc aaccggggcg ttgtaactgt      1620
     gggatggtcg cgttgccgca tagcccaaga cgtccgccca ataagatgct tcagatgcct      1680
     cgaattcggc caccgagctc cctactgcaa gtcagtcgat cgctctgact gctgcctacg      1740
     gtgcggcgag catgggcata aggcaaaggg ctgcgtagcc ccaccaagat gcctgatctg      1800
     cagcagtgac gtggacaaga accacgcgac gggtggtttt gcatgcccca cctacaaagc      1860
     caacaccaaa ggagctaata gccgtcaaaa tgatgccaga agaaattaac atcatccagc      1920
     tcaacgttaa ccattgcgca gcagcacaga acctcctgac tcaaacagcg aaggagcgcc      1980
     atgcggacgt agtgcttttg agtgaaccat acctacctgg tgtgggtaac tcaggagtgc      2040
     tactcgatga gacaggcaag gcggccatta aatgtacatc caggctattg gtagaggagt      2100
     gggataccgt accaatgcgc ggcatagcat acgccaaaat tagaggaatc cacttctaca      2160
     gctgctatgc tccacctagc gacagtcccg arcaattcga ggacatgctc gaaaagctgg      2220
     ttaaccatgc aagtgggcgc agaccaacag tcatcggagg tgacctcaat gcctgggcta      2280
     cagaatgggg cagtcgaatc tctaacacaa gaggacgagc agtgatcgat gccatgaacc      2340
     tgctagatct cgtattgcta aacgacgggt tcaaaccgac gttcaataat gacagaggta      2400
     catctttcat tgatgtcacc tttgttagca gagttctagt ggctagctcg aactggatgg      2460
     tccatgagga cataacgctg agcgaccaca acctaatcac gttcggtgcc cgaacaatga      2520
     ggccgtcacc caaacagcga agatgtgcgc taggtccggt atgggacatt aggaaactgg      2580
     atgaagacat gctggcatac cagatcgagg gcatggagtc cataattgga cacgcggaga      2640
     ccatggtgac agcgctcatg gataggctta gagcaatgtg tgatgcggtg atgccgagaa      2700
     aaaggaacac gaaacgaaag ccccctgtct actggtggag tgactcattg caccagcttc      2760
     ggacggaatg catcaaggcg aggaggcaag cgcagcgatc tagagggcaa ccgcaccact      2820
     cccagtgcat tgaggtatat aaagcgaagc gaactgagct taagaacggc atatcagcag      2880
     caaaggcgaa tgcatttaag gacctgattg atagcgtaga cgacgacccc tggggtctcg      2940
     cctacaaagt cgtaaggaaa aaactcaatt ccgctggtgc aggatctcct caggacccag      3000
     ccgccctggc caacatcgtg tcggaactat ttccaagcca acacacgtta tggcaacccg      3060
     ctgttgaccc ccccgcctct gacttcccgt gcatcacgtc atgcgaagtc gtcgaagcag      3120
     caaagaggat cagaccgaac aaagctcccg gcattgatgg tatcccgggc gtgatcgtca      3180
     aagcagccgc caccgcaaga ccggaggtct tcagggatac attccaacag tgtctgctgg      3240
     acggagtctt ccccaagcgc tggaaaaaga tgaagctggt ccttctgccg aaaggcaagg      3300
     ggcccgcaaa tgttccacgc agttaccgac cgttgtgtct gttggacatt gttggcaagc      3360
     tctttgagcg catactgtac gcgcgcattg agctaatcac tgaaagtcct acaggccttc      3420
     agggccaaca gtatggcttc cgaaagggta aaagtacgct cgacgctctc aaatccgtaa      3480
     cagacgctgc caggaaagca ctcgacggta accgatggtt aggcggcagt aagaagtact      3540
     gtgccatcat cacgctagac gtcaagaacg cattcaatac agcgagatgg cccattatcc      3600
     tcggggctat gcgcaacttg ggcgttcccg actacatacg aggcgtaatt ggcaactact      3660
     tcagggaccg tgtgttatgg tacgtaacag aagatggtcc aagaagccac caagtctctg      3720
     caggcgttcc ccaagggtcg gtactaggac cgatcttgtg gaacattatg tatgatggaa      3780
     tactgagcat tagcaagccc agaggtgtgg agctgcactg cttcgccgac gacgttgcga      3840
     taacagcggt cgccaagaca ataccggagc tccaggacat aagtaacgtg gcaatcacgg      3900
     cggccataga atggctcgag aaagtcggac ttaaaatagc tgcgcataag accgaagtag      3960
     tcctgctgag cagcagaaag tccgttgagt gcatgcgtgt ggaagtcaaa ggagttgaaa      4020
     tcgcctcagc agaaacgttg aaataccttg gtgttctaat agaccgaagg ctctcgttca      4080
     aggctcacgc aaggtatgcc agcaaaaaag cggcaatgac agcagcagcc ttggcgagaa      4140
     tcatgcccaa cgtgggagga cccagactgc cggctaggag actgttagtg gcggtttcaa      4200
     aggcaacgct gctttatgct gcgcctatct ggagctgcgt ttccacaaag aaaacctatc      4260
     tagatagtgc ccgcgcagta tcacggacaa tggctctcag gctaatcaga ggctttagaa      4320
     ccatatcgga cgacgcagcg cacgctctgt caggcattac acccattgac ctggacataa      4380
     agggcaaata ccttgcgagt gagggataca ctcaattaga gatcaaagag tggattcgag      4440
     gagtatggca gaccaggtgg caagagtcac aacggggacg ctggacttac aaactcattc      4500
     cgcaactaac ggagtgggct gattgcgagc acaaaacggt ggactaccac atgacccagt      4560
     tcctcacgga ccatggctgt tttcgagggt acctatgtag gttccgccac gtggatacag      4620
     cccagtgcct ttattgcaca gacgcagtgg aaaccgcaga gcacatccta ctgcactgct      4680
     ccaggttcgc cgaggagagg gcgcaactcg tggcgctcgc tgggtcacct ctcagcccga      4740
     gaggcttggt tgctgctatg atggcggaca aaatcgtttg ggatggggct cacgtgatca      4800
     tcgtcaccat gatgaagcgt gtccgtaagg acgagatggc caatcggaac tatagataag      4860
     gagtaccccc gtatgttggc ggggcaagaa ctctacgact ggtacgctca gttggtcgta      4920
     aaaaggcgct gctgtgcacc gcaaaagaag atggtgtgca acttggcacc acatcctgct      4980
     caccgatgaa ataccttgac tggcagtccc ggtgagcttg acaaggacag gagagagagc      5040
     ggaggttttt gtttagtacg taggcataag ccctcagctg agggttatga atcgtgcatg      5100
     ccatccaagg acattagatg gtatctttag aagatttcat tttcctgccg tatataataa      5160
     taaaaaaaaa aaaaaaaaaa aaa                                              5183
//
ID   DMRT1B      repbase;    DNA;    INV; 5400 BP.
XX
AC   .
XX
DT   28-JUN-2000 (Rel. 5.05, Created)
DT   19-SEP-2021 (Rel. 26.09, Last updated, Version 3)
XX
DE   DMRT1B is a non-LTR retrotransposon, a consensus sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   RT1; DMRT1; DMRT1B; Waldo-A.
XX
NM   DMRT1B.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5400
RA   Kapitonov V.V. and Jurka J.;
RT   "DMRT1B.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
RN   [2]
RA   Busseau I., Berezikov E. and Bucheton A.;
RT   "Identification of Waldo-A and Waldo-B, two closely related
RT   non-LTR retrotransposons in Drosophila.";
RL   Mol Biol Evol 18(2), 196-205 (2001).
XX
RN   [3]
RP   1-5400
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (19-SEP-2021).
XX
DR   [3] (Consensus)
XX
CC   DMRT1B belongs to the R1 clade of non-LTR retrotransposons.
CC   It has two ORFs. ORF1 encodes a putative nucleic acid binding
CC   protein.
CC   ORF2 encodes reverse transcriptase.
CC   There are ~20 copies of DMRT1B fossilized recently in the genome;
CC   they are ~98% identical to the consensus sequence.
CC   There is only 70% nucleotide identity between DMRT1B and DMRT1A
CC   consensus sequences.
CC   [2] In this article, it is called Waldo-A.
CC   [3]: updated to complete sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           611..2104
FT                 /product="DMRT1B_1p"
FT                 /translation="MDSAVGGSPPDRNDPFRRSPRLSRSPTRGVGNPTHGD
FT                 GISVPSVARGEHAGPQPPLTSDCSDAVEVENLAPTASTTATSQKTMDHIAV
FT                 PSQKTGGKSPAGSPHRSSDLTAALQNEDLRGILTRMNGKISTLLSAFETQR
FT                 HVTRETKGIASELSALNNRALELYKGTTSEHRLKSSATQTEVQKPTKKAPQ
FT                 NAQVPKVQVPKVQAPKPSNPTLGGNGEEKATSRPNESKPGSYASVAKNAST
FT                 GAEWTKVKPTRLRKKPEALIVKKTGEASYAEMLRKLRSDPSLSELGSHVRK
FT                 IRRTQKGELLLEVEGKASESVPKFKSDLEAALNDLASVRTGAQRIALSCSG
FT                 LDEATTAEELHSCLVAQFQGLQINPEDIRGLRRMRDGTQIASVLLNANVAI
FT                 PVLKQGTITVGWSRCRITQDVRPTRCYRCLGYGHRSATCKNTDRADCCLRC
FT                 GERGHKAKGCVAAPKCLICSSEVDRNHSTGSFACPTYRATLKEAKSHLNAH
FT                 SY"
FT   CDS           2091..5051
FT                 /product="DMRT1B_2p"
FT                 /translation="MHTHISVVQLNVNHCAAAQSLLAQTAVERNVDIMLLS
FT                 EPYVSGSGQSSMILDETGKAAIKCCSSLHVEELAALPMRGIAYAKLKHVHM
FT                 YSCYAPPSDTPDQFEEFLEALVDHARGRSPKVIAGDFNAWAVEWGSRTSNT
FT                 RGRAVIDAMGMLDLILLNDGRKPTFNNDRGTSFIDVTFVSRGLVDNNNWMV
FT                 HDVMTLSDHALISFSLSPEGMPRRRQSRAVGKAWDTRKIDEAMLAYQINSL
FT                 EIPSGDAESMAAGLMNMLGRICDAIMPRKNKAQRKPPVYWWSASLSQLRSD
FT                 CLRARRMAQRARGSTHHAELLEAFRRKRLEFKHGIAAAKARSFKELQDGVD
FT                 SDTWGLAYKLVTKKLRRRAATPSDPGVLANIVGELFPKQTTLWRPTEAAPA
FT                 PDFPCVTELEVAEAAKRIKPNKAPGLDGIPGAVIKAVALGRPEIFRATFQQ
FT                 CLLDGIFPTRWKSQKLVLLPKGKGPAHAANSYRPLCLLDIVGKLFERILYT
FT                 RIEAITESINGLGSHQYGFRKGKSTLDALSAVCNIAKTAISGDRWLGGRKE
FT                 YCAIVTLDVRNAFNTARWPVILAAMYRMGIPEYLRIVVGSYFRDRVLWYDT
FT                 EDGPKRYRVSAGVPQGSVLGPILWNIMYDGILGINRPVGVELHCFADDVAI
FT                 TAVSKTIAGLEDKCNSTIGAAIRWLEKAGLAIAAHKTEAVLLSSRKKVENM
FT                 LVSVKGTQVTSQESLKYLGVMIDRRLSFKDHASHASKKAAVTASSLARLMP
FT                 NVGGPRHPARKLLVSVAKASLLYAAPVWSNATGRVSYLKGARSVLRSMSLR
FT                 LIRGFRTISEDAALALAGLPPIDLEIKALSLMRSGASRQEAHEWLLGEWQS
FT                 RWQTSRRGRWTYQLIPEMTVWAECQHKCLDYHLTQFLTDHGCFRAYLLRFR
FT                 HVESAQCLFCVDGEETAEHVLMHCSRFTAEREQLKTLSGSPFSPSGLFAAM
FT                 LANRGAWERGHSIIINMMKRVRSDEMANRVDV"
XX
SQ   Sequence 5400 BP; 1428 A; 1397 C; 1543 G; 1031 T; 1 other;
     cgaagtctac atcgccgtga agacggacgt cttaaattaa cgctgcgcga aatactcgaa        60
     accatagtag ttgtgtcggc cggtgtgcgc ggcaaactgg caaaaccaca cggtggagtc       120
     gcgccatagt tctgcgctgc aatcacgcga gttaattgtg cgcctgtttc gggtaaatag       180
     gtaatttatt atcttgcgat tgttgcagcg gataaaacag ctgatagcgc tgccaacttg       240
     gcgcagcggg cgatctggag agggaggcgt tgccagatca accgtgtgat cagtgttgtg       300
     ttgcgacagt agagcgcgaa attcaaaatt aaacttaaaa ttaaaccgtt gaattttaat       360
     ttaattttaa ttttgattct ggttactggg agcgcacaag tctttaagaa aggggaaaag       420
     gcacaaaggt cgaggacaga ccaaatatca tcctctcacc gtgctggtgc ctaagcagag       480
     gctctggtgt ccgagtcgag gcggtacaaa cctccatccg taaaagccag ggggaaatcc       540
     gtggcctacg tgggaacccc tttctaaggc tggtgcttcg cctaggtaac cttaggccat       600
     ccttcagttg atggacagcg cagtgggggg cagtccccct gatcggaacg acccgttcag       660
     gaggagcccc cgactttcga gatcccccac cagaggagtc ggtaacccga cccatggtga       720
     cggaatctcg gtcccgtcgg tggcaagggg tgagcacgca ggcccccagc cgccgttgac       780
     tagcgactgc agcgatgctg tagaggtgga gaacttggct cctacagcat ctacgaccgc       840
     gacaagtcag aagacgatgg accacatcgc cgtgccatcg caaaagacgg gagggaagtc       900
     cccagctggt tcccctcatc ggtcttcgga cctgaccgcg gctctccaga atgaggacct       960
     gaggggcata cttaccagga tgaatggcaa gatcagcacc ttgctatccg cattcgagac      1020
     ccaacggcac gtgacacgag agacaaaggg catagcttcc gaactctcag cccttaacaa      1080
     cagggcgtta gagctgtaca aaggtactac tagcgagcac cgcttgaaga gcagtgctac      1140
     ccagacggag gtacaaaagc ctaccaaaaa ggctcctcaa aatgcgcagg tacccaaggt      1200
     gcaagtgcca aaagtccagg cgcccaagcc gagcaaccct acgttgggtg gcaacggtga      1260
     agaaaaggca acatccagac caaacgagtc caaaccaggc agctacgcat ctgtcgccaa      1320
     gaatgctagc acgggtgcag agtggaccaa ggtgaagcct acgcgcctgc gtaaaaaacc      1380
     ggaggcactc atcgtaaaaa agacaggaga ggcttcgtac gcagagatgc ttcggaagct      1440
     aagatcggac ccgagcctta gcgaactggg cagccacgtg cgaaaaatcc ggagaacgca      1500
     gaaaggtgag ctgttgctcg aggtagaggg gaaagcttcg gaaagcgttc ccaagtttaa      1560
     gagcgacctg gaagcggcgc tcaatgactt ggcctctgtg cgcacaggag cgcaaagaat      1620
     agccctatct tgcagcggat tggacgaggc tacgacagca gaggagctcc acagctgctt      1680
     ggtcgcccaa ttccagggcc tgcagataaa tcctgaagat atcaggggcc ttcgcagaat      1740
     gcgggatggc acgcaaatag cctcagtgct gctgaacgcg aacgttgcga taccagtcct      1800
     taaacagggc accataaccg ttggatggtc aagatgtcgt atcacccagg acgtccgacc      1860
     cacgagatgc tacaggtgtc tcggctatgg gcatcgatca gcaacctgca agaacactga      1920
     cagggcagac tgctgtctta gatgcggtga gcgtgggcac aaggcaaagg ggtgcgttgc      1980
     agcaccaaaa tgcctgatct gcagcagcga ggtggacaga aaccactcga cgggtagctt      2040
     tgcgtgcccg acctacagag cgaccctaaa agaagccaag agccacctta atgcacactc      2100
     atattagcgt agtacagctc aatgtcaatc attgcgcagc agctcagagc ctcctggccc      2160
     agactgcggt tgagcgcaat gtagacatca tgctcctaag cgaaccctac gtctctggta      2220
     gtggacaatc gtccatgatc cttgacgaga caggtaaagc agctatcaaa tgctgcagct      2280
     ctctccacgt cgaggaactg gctgctttac ctatgcgggg tatcgcttat gcgaagttaa      2340
     aacacgtgca catgtacagc tgctacgctc cgccgagcga cacccccgat cagttcgagg      2400
     agtttctgga ggcgctcgtg gaccatgcga gagggcgaag cccgaaggtc attgccggcg      2460
     actttaatgc ctgggcagtg gaatggggca gcaggacatc caacaccaga ggccgagckg      2520
     tgattgacgc catgggaatg ctggacctta tactgctgaa cgacggacgg aagccgacgt      2580
     ttaacaacga taggggtacg tcctttattg acgttacctt tgtcagcaga gggctagtag      2640
     acaacaacaa ctggatggtc catgacgtca tgacgctgag cgaccacgcc ctgatctcct      2700
     tcagtctctc cccggagggc atgcccagga gacggcagag tagagcagtc gggaaagcat      2760
     gggacaccag gaagatcgat gaggccatgc tggcctatca gatcaattcc ctggaaatcc      2820
     caagtgggga cgcagagagt atggcggcag gcctcatgaa tatgctggga agaatctgcg      2880
     acgcaatcat gccaaggaaa aataaggcac agcgcaaacc acccgtttac tggtggagcg      2940
     cctccctaag ccaactacgg tctgattgcc tcagggctag gagaatggcg caacgagcca      3000
     gaggcagtac ccaccacgcg gaactcttgg aggctttcag aaggaaacgc ctagagttca      3060
     agcacggcat cgcggctgcc aaagcgcggt cgtttaagga gctgcaggat ggcgtagaca      3120
     gcgatacctg gggcctcgcc tacaagcttg ttaccaaaaa gctaaggagg agagcggcaa      3180
     ccccatccga cccgggggtc ctggctaaca tagtagggga gctattccca aagcagacca      3240
     cactatggag gccaacagag gcagcccctg ccccagattt tccgtgcgtc acagaacttg      3300
     aagtcgccga ggcagccaag cgcatcaaac ccaacaaagc ccctggacta gatggtattc      3360
     ctggagctgt tataaaagca gtggcgctgg gtagacctga aatcttcagg gccaccttcc      3420
     agcaatgcct tctggacgga atcttcccaa caaggtggaa aagccagaag ctagtcctgt      3480
     tgccgaaagg caagggacca gcacatgctg caaacagcta ccgccctcta tgcctactgg      3540
     atatagtagg aaaactgttc gaacgtatcc tgtataccag aatagaggca atcaccgaga      3600
     gcatcaacgg cctgggaagc catcaatatg gcttccggaa aggaaagagc actctggacg      3660
     ctctttcggc cgtttgtaac atcgccaaga ccgctatttc tggtgataga tggttagggg      3720
     gcaggaagga atactgcgca attgtgactc tggacgtaag gaacgctttc aacaccgcca      3780
     gatggcccgt aatcctcgcg gccatgtacc gtatggggat cccggagtac ctaaggatag      3840
     tcgttggcag ctactttagg gaccgggtcc tatggtacga tacggaagat ggcccaaaaa      3900
     gataccgagt ttcggcaggt gttccccaag gatcggtact tggaccaatc ctatggaaca      3960
     ttatgtacga tgggatcttg ggcatcaaca ggcccgtagg agtagagctg cattgttttg      4020
     ctgacgatgt ggcaatcaca gctgtctcga aaacaatcgc agggttggaa gacaaatgca      4080
     actctacgat cggtgctgcc atccgctggc tcgagaaagc cgggctagca atagcggctc      4140
     acaagaccga agcagtccta ctaagcagca ggaaaaaggt ggagaacatg ctggtctccg      4200
     tcaagggtac acaggtgacc tctcaagagt ccctaaagta cctgggggta atgatagatc      4260
     gcagactatc gttcaaggac cacgcgagcc acgccagcaa gaaggcagca gtcacagcct      4320
     cttcgttggc gaggcttatg cccaacgtcg gaggcccaag acacccggcc aggaaactgc      4380
     tggtgtcagt agcaaaggct tcgctactat acgctgcacc agtctggagc aatgccactg      4440
     gcagggtctc atacctgaaa ggagctcgtt cggtgctacg gtcaatgtcc ctgaggctca      4500
     ttagaggttt caggaccata tccgaagacg cggcgctagc gctggcaggc ctgccgccga      4560
     ttgatctgga gatcaaggct ctcagcctaa tgcggagtgg cgcttccagg caagaggcac      4620
     acgagtggct attaggtgaa tggcagagta gatggcaaac gtcgcgacgg gggaggtgga      4680
     cttatcagct catcccagag atgacggttt gggcagagtg ccaacacaaa tgcttggact      4740
     accacctaac ccagttcctc acggaccatg gctgcttccg ggcctatcta ctccggttcc      4800
     gtcacgtaga gtcagcccaa tgcttgttct gcgtcgacgg tgaagaaaca gcagaacatg      4860
     tgctaatgca ctgctccagg ttcacggcgg agagagagca gctaaagacg ctgtcaggtt      4920
     ccccgttcag ccctagtggc ttgttcgcgg ctatgctggc gaacaggggg gcttgggagc      4980
     ggggacacag cattatcatt aatatgatga agcgtgtccg atcagacgag atggccaaca      5040
     gagtggatgt ctaagcccaa actggtgtcc tgggtgacgg cgggcgaaga attcatcctc      5100
     agcgtccccg gctcgtcgta aaaggcgact aaagggtgga aggaggagcc cccatggact      5160
     acactgaagg aagggagtgc gacctggcct cacatcctgc tcaccgaagt cataccttga      5220
     ctggcagtcc cggtgagcga gcaaggactg tagagcacgc ggaggttttt gttttagtac      5280
     gtaggcataa ttccaatagg gcttatgaat cgtgcatgcc acctacggac ggtaggtggt      5340
     atctttagaa gattttaatt ttcctaccgt aagtcaaata ataaaaaaaa aaaaaaaaaa      5400
//
ID   DMRT1C      repbase;    DNA;    INV; 5443 BP.
XX
AC   .
XX
DT   29-JUN-2000 (Rel. 5.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   DMRT1C is a non-LTR retrotransposon, a consensus sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   RT1; R1/I clade; DMRT1; DMRT1C.
XX
NM   DMRT1C.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5443
RA   Kapitonov V.V. and Jurka J.;
RT   "DMRT1C.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
DR   [1] (Consensus)
XX
CC   DMRT1C belongs to the R1/I superfamily of non-LTR
CC   retrotransposons.
CC   It has two ORFs. ORF1 encodes a putative nucleic acid binding
CC   protein.
CC   ORF2 encodes reverse transcriptase.
CC   There are ~50 copies of DMRT1C fossilized a few million years ago
CC   in the genome; they are ~92% identical to the consensus sequence.
CC   There is only 60% nucleotide identity between DMRT1C and DMRT1A
CC   (or DMRT1B) consensus sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2603..3796,3517..5304)
FT                 /product="DMRT1C_1p"
FT                 /translation="GKGGQMVGVQPDARGRTQVLIAGDFNAWSESWGSSTT
FT                 NARGRMVLEAFATLDLALLNQGNRHTFRRAGLGSVVDLTFTSGSSFRLTRW
FT                 RLSEEYTGSDHLAIICDLGCPSSTQAQLAAQARIKYKTDTLDTQLFREQFL
FT                 PSVSGEGAELTAVALMRQLKTACDDSMQTSRTHSQQRAPVYWWNQEIETAR
FT                 RECLSARRRYQRARGAESFAERQSEYRARRKALKLAIRESKRKCFLDLCDS
FT                 ADSDPWGSAYKVVVKQAYTRTPKLLDPAMLRSVAEHLFPLMDRLRPADPAT
FT                 GDHVEADATVSSEEILELAKLLKDGKAPGPDGIPIRALRLSLPPANSFAKA
FT                 FTKCLTEGVFPSCWKVQKCCSSQNQGSHPRSLYRSGRYASSMELASSWRNW
FT                 CAFGGDPGAGETAEGRQGPRARRHSDQGASALSTSSQLVCEGIHQVPDGRS
FT                 LPKLLEGTKVLLLPKPGKPPEEPISFRPICLIDGTGKLLEKLVCIRLERAI
FT                 ADAGDLSRSQFGFRKARSTVDAVNRVVEVAAQAIEGTRWKGGSKEYCLMVT
FT                 LDIRNAFNTARWDRILEALIGFGVPAYLVRIIRSYFSDRVLLCESSEGVFR
FT                 HQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKH
FT                 PGKAEEKCNQNIRAIEQWLSSMGLELAPEKTEAVLISSRKAVETATVEVGS
FT                 TSVSSSRAIKYLGVMIDTRLSFREHLAYASSKAAGVNRALSTIMLNTRGPK
FT                 QASRRLLTSVTRATMLYAAPVWAKALETESYAQGLNATHRLSALRICCAFR
FT                 TVSNEAALVIAGIPPLDLLAQENKVVFNQTHGRSLSPCAKRSIRAEARQHT
FT                 LETWQHRWNNELKGRWTHQLIPNLKPWIERKHGEITFHLTQLVSGHGCFRS
FT                 YLKRFGHEEADDCPWCGSGRSETAEHVLFSCDKYARERSSLETVLGSRLNA
FT                 DNLVPFMLQGEAEWQAVNSFAAAITTELRRAERARRVHE"
XX
SQ   Sequence 5443 BP; 1389 A; 1524 C; 1572 G; 958 T; 0 other;
     ggggacgcgc gcgagtagcc gtgtgaatcg agttggcgct cctggaaaac cccaaaattt        60
     tccgtgtcgc ggcggcttga tggagacagg agtggctgtc tctaacacac agtgccgata       120
     tgagtactca ccagcagtgg gcaagctcca agtatccatg gatcgcccgc cggcgccgat       180
     cctcagggcc atggagcagg tcagggtgag agaagcagcg aactttctct gcactacttt       240
     ctctttgtcg ctgtgttgtt tcttttggcg tcttggctgc caccagactt gccggtcacg       300
     ccagctgatc tcgcagtcag cttggaaagc agtgctggta aacggctaaa gcaccgcggt       360
     ctggcagcgc tggtcggatg cacgagtccc ctagcacagg tgagccgttt tctcggtgaa       420
     agcactcact gacaaaagct agcagctacg gaaatcgcct aacgatcggt tcaccggtcg       480
     tagcatacat ttttgggcgg ctgacggtta tccttggcaa catcccatgg aaacccggag       540
     acagatccat aatcgagcag gagaggcaga acaagagtgt aaaaagtcaa ggagcagacc       600
     aatagccaac ccccccgctt aggcggcaca ctttaaatcc ggggctctgg cgaccaagct       660
     ggagcggtat atctcccacc gtcgcaactt tcccctgctc acccacccca taagtccacg       720
     gcgcgtctga cccaaagtgg gcgggtacgt ggcctgcgcc tgttctcttt accagccggg       780
     cagcagcaaa ataaaaaccc attcagcgtc tgagccaagt tggccggcgg aatggtctgc       840
     gtctgcgccg catcggccgg cagaatatcc aaaacctggc gaaaggtata aagccgcaaa       900
     cctggcagga ggtataaaat gcaacaccta actggaatgt ctgtaaacaa ctttattact       960
     ccaggtggca gccacacatg tggaaatcca ccctcggcta atcccgaggc tagggcacgg      1020
     attctggagg ccctaccaaa cattctcccc aaacccgccc cgacggcggc acacttggcc      1080
     gtcggactaa gcaatgcaac aagtgcaccc acaacggacg aagaaagctt ggtgtttggg      1140
     aaaaggtcaa aggtcctaag gaccccaccc cagaacccga gcgatggcac ccccaagagg      1200
     ccattagaag cgacatcccc cctaccagag cccaaccagc aaagcgggta aagacccccc      1260
     agctagaaat cgaggagatg ggagcaatcc tggacgacct tctgacgaag gtcaaccaca      1320
     acggggtgag gagcgtcaat caggcaatga aaaactcatt cgccagattg aaggagctcc      1380
     aactaaagct gcgcacaagg ctgccggagg cggagaattc gcatgtcgga cgcaccgcaa      1440
     gagccgatgc tagccaacag accaccccta agcgcccctc cagccacgaa gaaccgagta      1500
     agggtccgcg aagaaagccc agcgatccga ccaccagaag gcagcgggac ccaagcgcct      1560
     accaagggct ccgccccaag ccactgcagc gggaaacaag acgcaaccaa gattgcagca      1620
     tccgcccgga ccgcgcagga agagaccgcc aagggagagg ccagatgcgc tggttatcac      1680
     cccctcagct ggcttaccgt acagcgaagt gctgtcgctg gtcacaagag ggcaggacgc      1740
     caggctcagg gccatcgggg agaacgtatc aagggttaag aggacggcca aaggcgaact      1800
     gctcctcgag ctacgtgcct ctgcccaaga cttgacgcag aagctcaaga tggacatggg      1860
     agcggtgcta ggagaccgcg ccagccttcg cgcgttaact caatccaaag tatttttgat      1920
     tcgcgacctc gacgagctta ctactgaaga cgagctgagg agggtcctgg agtcccggca      1980
     tagattccag cagcagtggt ggctatcaag agcctccgtc aaacgcagta tggagggaag      2040
     tctgctataa tagcagttcc agccaatctg gcggacccgc tgatcaagcg tggcaagctg      2100
     agggtaggat ggtcccaatg tctgatcaag gaactggagc cacgccaaag atgcttcaaa      2160
     tgtctggagg aaggccacat agcggcccat tgtagaagcg ccgtcgacag aagccagtgc      2220
     tgcttcagat gcgggtccgc gggacacaag gccgcagagt gtcccaacga ggctaagtgc      2280
     tttttgtgcg caagcagagg aagccaagcg accaaccacc aagcaggcac ccggaagtgc      2340
     ccattggcgg gcaaaggagc accaaaggca ccacaatgat gcgtttgatt cagctaaacc      2400
     tgaatcactg cacggcagcc caagacctgc tagtgcagac ggtgcgcgaa cgcagagtgg      2460
     agcttgcgtt acttagcgag ccctaccgga cggcggacag cccagactgg gctttcgacc      2520
     gcgccaagaa agcagcaatc tggaggtgca gcagagaagc ccaacaatta accgatgttt      2580
     tttcggacat cgggtttgtt agggcaaagg tgggcagatg gtgggtgtac agccggatgc      2640
     tagaggccgc acccaggttc tcatagctgg cgacttcaac gcatggtcag agagctgggg      2700
     cagttcaacc accaacgcga gaggcaggat ggtgctcgag gcattcgcga cgctggacct      2760
     ggctctatta aaccaaggga accggcacac gttcaggcgt gccggactgg gctctgtggt      2820
     ggacctcacc ttcactagcg gctcgtcgtt caggctaacg aggtggagac tcagcgagga      2880
     atacactggc agtgaccact tggccatcat ttgtgatctg ggatgccctt cctcgaccca      2940
     agcccagcta gcagcccaag ccaggataaa atacaaaacg gacaccctgg acacgcagtt      3000
     attccgagag cagttcctac cctcggtgag tggagaagga gctgagctga cggcagtggc      3060
     gctgatgagg cagctgaaga ccgcgtgcga cgacagcatg caaacaagca ggacacatag      3120
     ccaacaaaga gcccctgtct actggtggaa ccaggagata gagacggctc gccgagaatg      3180
     cctctccgcc agacgtcgct atcaacgcgc tagaggtgcg gagtcctttg ccgaacgcca      3240
     atccgagtat agagcccgca ggaaagcact caagctagcc atacgggaga gcaagcggaa      3300
     atgcttcctc gacctatgcg attctgctga cagcgaccca tggggaagtg cctacaaggt      3360
     ggtggtcaag caggcatata cgaggactcc caagctactg gacccagcga tgctccgcag      3420
     tgtagcggaa catctgtttc ctttgatgga caggttacgc cccgccgacc cagccacagg      3480
     ggaccacgtc gaagccgacg ccacggtcag cagtgaggag atcctggagc tggcgaaact      3540
     gctgaaggac ggcaaggccc ccgggcccga cggcattccg atcagggcgc ttcggctctc      3600
     tctacctcca gccaactcgt ttgcgaaggc attcaccaag tgcctgacgg aaggagtctt      3660
     cccaagttgc tggaaggtac aaaagtgttg ctcctcccaa aaccagggaa gccacccgag      3720
     gagcctatat cgttccggcc gatatgcctc atcgatggaa ctggcaagct cctggagaaa      3780
     ctggtgtgca ttcggctaga gagggctatc gcagacgcgg gtgacctctc acggtcccag      3840
     tttggcttca ggaaagcgcg gtccaccgtc gacgccgtca acagagtggt cgaagtagcg      3900
     gcccaagcaa tcgagggcac cagatggaag gggggtagca aagagtactg cctcatggtc      3960
     acactagaca tcaggaacgc cttcaacaca gcgaggtggg accggatcct agaagcatta      4020
     attggcttcg gcgtcccagc ctacctagtc aggatcattc gcagctactt ctcggatcgg      4080
     gtcctactgt gcgagtcgtc ggaaggagtc ttcaggcacc aggtcaccgg tggagtcccg      4140
     caaggctcgg ttctcggccc gcttctgtgg aacaccatgt atgacgggat acttcgccta      4200
     ccgctggttg ggaggagcga gatcgtaggc ttcgcggacg acgtggcttt gctcgttgtt      4260
     gacaagcatc ccggcaaggc tgaggaaaag tgtaaccaaa acatcagggc cattgaacaa      4320
     tggctcagct caatggggct agagctggcg ccggagaaga cggaggctgt cctgattagc      4380
     tccaggaagg cagtggagac ggccactgtc gaagtaggca gtacctcggt gtcctcctct      4440
     cgggcaatta agtacctggg agtcatgata gacaccaggc tttcgttccg tgaacaccta      4500
     gcctacgcta gctcgaaagc agcaggagta aatcgggcgt tatcaaccat aatgttgaac      4560
     acccgaggcc caaaacaggc gagtagacgg ctgctgacga gcgtcacccg cgcgaccatg      4620
     ctatatgccg ccccggtgtg ggcaaaagcg cttgaaacag aaagctacgc ccagggccta      4680
     aatgctaccc atagactgtc ggcactacgt atctgctgcg ccttcagaac agtgtccaac      4740
     gaggcggcat tggtgatcgc aggcataccg cctctagacc tattagcgca ggaaaacaaa      4800
     gtggtcttca accaaaccca cggtagaagc ctctccccct gcgccaagag gtcaatacga      4860
     gcagaagcaa ggcagcacac cctggagaca tggcagcaca ggtggaacaa cgagcttaag      4920
     ggtcgctgga cgcatcagct gattcctaat ctcaagccgt ggatagaacg gaagcatggc      4980
     gaaataacgt tccatctaac gcagctggtc agtgggcacg gttgctttcg cagctatctg      5040
     aagcgctttg gacatgagga ggcggatgat tgcccatggt gcggaagtgg acggagcgaa      5100
     accgcagagc acgttctctt ctcgtgcgat aaatatgcaa gggaacggag ctctctggaa      5160
     accgtacttg gcagcagact gaatgcggat aacctagtcc cattcatgct gcagggtgag      5220
     gcggaatggc aagcggtcaa cagcttcgcc gcagcgataa ctaccgagct cagaagagcc      5280
     gagagagcca ggagggtcca cgagtaagca aatcttgatc gtcctcgcga agcaatgctt      5340
     cacggccata ccgcgggggg ttctggattt gccctcctta ctgttacatt gttatattaa      5400
     ttaatcttaa tcttaaatgt ctaataaacg aattaaaaaa aaa                        5443
//
ID   DMR_DV      repbase;    DNA;    INV; 369 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 3)
XX
DE   D. virilis moderately repeated DNA element - a consensus.
XX
KW   Transposable Element; DMR_DV; pDv repetitive sequence;
KW   Repetitive sequence.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RA   Zelentsova S.E., Vashakidze P.R., Krayev S.A. and Evgen'ev B.M.;
RT   "Dispersed repeats in Drosophila virilis: Elements mobilized by
RT   interspecific hybridization.";
RL   Chromosoma 93, 469-476 (1986).
XX
RN   [2]
RA   Zelentsova S.E., Vashakidze P.R., Kraev S.A. and Evgen'ev B.M.;
RT   "Repetitive sequences dispersed through the genome in Drosophila
RT   species of the virilis group.";
RL   Mol. Biol 20, 577-583 (1986).
XX
RN   [3]
RP   1-369
RA   Jurka J.;
RT   "DMR_DV.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
SQ   Sequence 369 BP; 129 A; 63 C; 53 G; 122 T; 2 other;
     ggatccctac gaattcaaaa aggtataaca tttcaaaatc agacgatatt tacccgagat        60
     attcaaaaaa aatcatcgaa aaagttttga ttttcgaacc gaccccgatt ttgaaaaaaa       120
     acgtgatgta accccttgcy attttgtcga ttttggtcaa aatttagatt ttcatttttt       180
     tgatgccaat cgatagtact gatccttacg agtccaaaat ggtataaaat tccaaaatct       240
     gacattattt ggccgagata ttccaaaaaa tcatcaaaaa aggttgactt tacaaacgaa       300
     tcggtttttg gtcaacaact ttttttaacc catcgatttt taatttsttt gaatgccaat       360
     tgatagtag                                                               369
//
ID   DMSAT6      repbase;    DNA;    INV; 470 BP.
XX
AC   M86309;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.melanogaster satellite repeat DNA sequence.
XX
KW   SAT; Satellite; Simple Repeat; Centromeric repeat; DMSAT6;
KW   heterochromatin repeat; Satellite repetitive element.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-470
RA   Abad P.J., Carmena M., Baars S., Saunders D.R., Glover M.D.,
RA   Ludena P., Sentis C., Tyler-Smith C. and Villasante A.;
RT   "Dodeca satellite: A conserved G+C-rich satellite form the
RT   centromeric heterochromatin of Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 89, 4663-4667 (1992).
XX
DR   GenBank; M86309; Positions       1     470.
XX
SQ   Sequence 470 BP; 48 A; 168 C; 117 G; 137 T; 0 other;
     actagtcgcg tactcagtcc cgtactcggt cccgtactcg tcccgtactg gtcccgtact        60
     ggtcgcgtac tggtcctgta ctggtcccgt actcggtccc gtactggtcc cgtactcggt       120
     ttctactgat cccgtactgg tcccgtaccg gtcccgtacc ggtcccgtac tcggttccgt       180
     actcggtccc ttattggtcc cgtactggtc ccgtactcgt ctcgtactct gtcccgtact       240
     cgtctcgtac tctgtcccgt attggtcccg tactggtccc gtactcggtc acgtactcgg       300
     tcccgtactc ggtcccgtat tggccccgta ctggtcccgt actggtcccg tactggtccc       360
     gtactggtcc cgtactcggt cccgtactgg tcccgtactc ggtcccttat tggtcccgta       420
     ctggtcccgt actggtcccg tagtggtacc gtattgggtc ccgtactagt                  470
//
ID   DMTOM1_LTR  repbase;    DNA;    INV; 410 BP.
XX
AC   .
XX
DT   23-APR-2001 (Rel. 6.03, Created)
DT   23-APR-2001 (Rel. 6.03, Last updated, Version 1)
XX
DE   DMTOM1_LTR is an long terminal repeat of the DMTOM1 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DMTOM1_I;
KW   DMTOM1_LTR; Gypsy group; Gypsy superfamily;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-410
RA   Kapitonov V.V. and Jurka J.;
RT   "DMTOM1_LTR.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
DR   [1] (Consensus)
XX
CC   DMTOM1_LTR is a long terminal repeat of the DMTOM1 endogenous
CC   retrovirus. There are ~10 copies of DMTOM1_LTR in the genome,
CC   they are ~95% identical to the consensus sequence.
XX
SQ   Sequence 410 BP; 136 A; 98 C; 60 G; 115 T; 1 other;
     agtaacgtaa ttatgccttc ctcataattc acttatacaa aagaccgacc gcggtggtcc        60
     gccgtatyga ttcctcgtta aataaacaaa catttctcga tattgcgcat ccactcaagc       120
     cgtaatcaaa acccagccac taggcaggca catagccacg tagcacataa gaattctttt       180
     tcatatgtat gcacataagc ataagcaaga agcgctctcg cgcagatcaa gtaaacaacc       240
     cactaaccca gtacatctaa gattttctca caccaattgt ttcagtctta agctgatatt       300
     caatcaataa aaacgcaaag cggattcatt cggagttttt atttatttcg gcgttgatct       360
     tagttcaaat acggatcatt tattcgactc aaaacaaaaa ctattttact                  410
//
ID   DNA-10_AAe  repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-389
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1265-1265 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. Present in >2500 copies in the
CC   genome. 8 bp TSD.
XX
SQ   Sequence 389 BP; 133 A; 72 C; 78 G; 105 T; 1 other;
     cctgagagag aggagacagc tggcttagat tgcgagctcc caaaagtcan gggaacctgt        60
     caccaactgt cactggaaaa ccggcacatt cgaagggcag agcgtgaaaa accgtcaaaa       120
     ttcaagtaaa cgtaattaaa atttctaggt gtttttcgat gatttcacat tttaaaaagt       180
     tgaataccta aatatagttg tgtgttggca aactgctatt gattttttta tattcatatc       240
     ctttttcata gtgaacaaca agaagtgaat atgattttga ccaaaataag ttcatctgac       300
     cgttgtgcac aacccaagaa ttaaagaaag aagtcaaaga aggcaagaaa acatgccaac       360
     tgtcagtgag ctgtctcctc tctctcagg                                         389
//
ID   DNA-10_BTa  repbase;    DNA;    INV; 434 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   29-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-434
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 655-655 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus. TSDs are uncertain, but seems to
CC   be 0-bp long.
XX
SQ   Sequence 434 BP; 123 A; 96 C; 94 G; 121 T; 0 other;
     gggtcagttg cgctggtcac agaatcgtgt tttgatgctt gattcttgta gattagctaa        60
     aaataataag atctgtccaa acagcaactt tctacgttca atattaaccg agatatcgcc       120
     ctttgaaaag tcgggttttt gacgtcatcc accgcggtag tgacaccctt ggtttcttcc       180
     accttgcttt catccgagtt tcacgttgaa caaccagtgc aaatgtgcgt cacaccgact       240
     gatgaaagca aggtggaaga aaccaagggt gtcactaccg cggtggatga cgtcaaaaac       300
     ccgacttttc aaagggcgat atctcggtta atattgaacg tagaaagttg ctgtttggac       360
     agatcttatt atttttagct gatctacaag aatcaagcat caaaacacga ttctgtgacc       420
     agcgcaactg accc                                                         434
//
ID   DNA-11_AAe  repbase;    DNA;    INV; 488 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-488
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1266-1266 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. Present in >5000 copies in the
CC   genome. TA TSD.
XX
SQ   Sequence 488 BP; 154 A; 107 C; 111 G; 115 T; 1 other;
     gggagactta cggcttcggc accattcgac tattatcggc aaccaaattt caaacgccaa        60
     atacacagta tttttctatc aaaacacatc agtggaaaca ttcagatgat tctttgttct       120
     gcccgcttcc cgctggcgag atttccgaga ctaaacaaac gatatcgccg gagatgtcat       180
     caattcaaat gagcacgcct caaaatgcga ctgatttgga gctgccgaag agattcacca       240
     gcagttgtta tgggaaagtt gccgaagaga ntgaggctgc cgacaatagt cacactgaca       300
     agggatgttc gcagcgttgt aaaaacgttt ccaaaagcat tttgacaagt ctgtcggtgt       360
     gaatcgatag aggattgagc aacgcataaa tgtaaataga caaacacgga atttgtctgc       420
     tgatgtccga gaaaattaca aaagaagcac ggcatcggct taagctgccg agaatacgta       480
     agttcccc                                                                488
//
ID   DNA-11_BTa  repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   29-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-11_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-551
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 633-633 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 551 BP; 154 A; 123 C; 122 G; 152 T; 0 other;
     cagcgggccg attattgaaa ttgatagaca aagctataga caaagaagac aaaagggata        60
     tggagggatc ctattggtgg aagcgggtgg ttgcaatgga caaaggaggt aggtaataga       120
     ctaactaacg gcaacccacg agagacccga cagttagtcc atcattttcc cccttagtct       180
     ataggaacca cccatttcaa ccaataggat cgctccatac tccctatgtc ttctttgtct       240
     atcgctttgt ctatcaattt caataatcgg cccgcagcgg gccgattatt gaaattgata       300
     gacaaagcta tagacaaaga agacataggg agtatggagc gatcctattg gttgaaatgg       360
     gtggttctta tagactaagg gagaaaatga tggactaact gtcgggtctc tcgtgggttg       420
     ccgttagtta gtctattacc tacctccttt gtccattgca accacccgct tccaccaata       480
     ggatccctcc atatcccttt tgtcttcttt gtctatagct ttgtctatca atttcaataa       540
     tcggcccgca g                                                            551
//
ID   DNA-12_AAe  repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   25-APR-2019 (Rel. 24.04, Last updated, Version 3)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-12_AAe.
XX
NM   DNA-12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1267-1267 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 4 bp TSD. >4000 copies.
XX
SQ   Sequence 255 BP; 86 A; 45 C; 49 G; 75 T; 0 other;
     ctcgcggaac attactaaag gacctatgta caaatgagag attctctcct ctctcgttct        60
     ctttcgatta taacagtgga atactaaaga ttttgggaag tttttcacta tagatcgaaa       120
     gtcaatttcc ttgactagcg tttcatacaa aaaacgcaac agaagaggtt aatgtgactc       180
     agttattaat gaaagagaaa gtaaacaaag agagcctctc aatgttagat aggtccttta       240
     gtaatgttcc gcgag                                                        255
//
ID   DNA-13_AAe  repbase;    DNA;    INV; 767 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-13_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-767
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1268-1268 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 9 bp TSD. >10000 copies.
XX
SQ   Sequence 767 BP; 265 A; 133 C; 119 G; 249 T; 1 other;
     ttcgggtgaa attgatcatt tttcacggtt tttcttgtcc gttttctata atgttgacaa        60
     tgccaaacaa ttgaatgcag gaaaacaagt acgaaggtga gtctcattga ctcatgtacc       120
     gaaattttct aacaaatgtc attttagtgc taagaaatat ctctaaaata aaaaatcggg       180
     gaatctcatt tcggggtgaa attgatcact tgtcaatgcg attattgtta gttttcaaac       240
     caactctata taataaattt gaggtccctg aatccgaata tgcttgctaa attcttaaca       300
     atacaataat tatagaaata atgaatagtt aaatttcaag aattacgcga aaaacgccta       360
     aatgtatgca atttcctaag gaatatctcg atatctaaca gaaattcaat tatttccacc       420
     gaatgaccaa attggtacga gttttggtta tgaaatctgg tttggggata tatctcaagc       480
     atcctcacaa actttcaggt ttataccatg ttcaaatcct tgtttagaac tagaagttta       540
     tggatgtttg tcaatatcgc accgcacatg attttggaat tttacattat tttcatagaa       600
     ataaacattc tttaacgcaa aamacttaac aacacacaat tcgacaatag ttacgacaaa       660
     caacgttcat tcactgcagg ttacattgat atttgtgctc cattaggaag aaataaaatc       720
     gagtgacacg gtgatcaatt tcaccctact gatcaatttc acccgaa                     767
//
ID   DNA-13_BTa  repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-13_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-257
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 865-865 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 257 BP; 78 A; 52 C; 48 G; 79 T; 0 other;
     cgatggctaa cgaacaatac cgcctatctg caaactgacg attttgcaga acgaagagaa        60
     aacttcgcca tttttgtaat tttaaggtta gatttgcaat tttttcatac attacagcgt       120
     cattgaagcg ctcccctaca gaattggaaa aaaactaaaa tcatcagctt gcgtatttta       180
     tactgtagaa tgcggcaaag tcgctaactc atttttgcca aaattgtcag ttaggcggta       240
     ttgttcgtta gccctcg                                                      257
//
ID   DNA-14_AAe  repbase;    DNA;    INV; 429 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-14_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-429
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1269-1269 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. Present in >1500 copies in the
CC   genome. 2 bp TSD.
XX
SQ   Sequence 429 BP; 147 A; 70 C; 69 G; 140 T; 3 other;
     cccgagcaaa gttgggtaac aaaatgataa caagttgtgt tatccgataa caagcatttg        60
     ataacatagt ttgttatcat tttggttgaa taagcaggca acataacaaa cgtgataaca       120
     aaagtttata ctaaagatat catatagata nctcattgtg ttatcatttg aaacacattg       180
     ataacaagtt ttgttatcca gcgaatttcc ctcattgata actcattatg ttatcantta       240
     gttataaaga tcgaattatg ataacaaaca tttgacgtca ttcacccgtc ggttgcatcc       300
     tcgatctgac agctcaaaat tcgttgataa caagagtntt cgtattgata acaaaaaata       360
     acaaaatgaa atcatgctgt acatcttgtt atcactatgt tatgcggttg ttattcgact       420
     ttgctcggg                                                               429
//
ID   DNA-14_BTa  repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-14_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-308
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 925-925 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 308 BP; 106 A; 57 C; 52 G; 93 T; 0 other;
     gactgattta gtgactacgt cattcgatat aatatcgaac tcttggttca aaccaaaaca        60
     aactaacata acctcatgta cgaattcttc atgagttaat tgtgttaatt tattaaaatt       120
     tagtcattga ccggtcataa atcaattaaa gactcattaa acacgagaac tttcgattgt       180
     aagaaacact tggacgcatt ttaccaccat ggcgcaaagg gcgcgaatca gaaacaaggt       240
     tctgtgtttg tttacatttg aaccaagggt tcgatattat atcgaatgac gtagccacta       300
     aatcagtc                                                                308
//
ID   DNA-15_AAe  repbase;    DNA;    INV; 4761 BP.
XX
AC   .
XX
DT   11-APR-2011 (Rel. 17.12, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-11_AAe;
KW   DNA-15_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4761
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2463-2463 (2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. TA TSD. Both termini are similar to
CC   those of DNA-11_AAe.
XX
SQ   Sequence 4761 BP; 1566 A; 848 C; 884 G; 1463 T; 0 other;
     gggtaaatga tggcttcggc accctgaggg tattttcggc aacactaact tatcgtcctt        60
     gttagaattt atctacggaa caagggttac cttcaatgta ctcaacatgt tccttgaact       120
     ataatcttcc atataaatca cattcttgac gaaaatatta tataacatgg gttttattat       180
     taaatgaaat aaatgcttac gaaatcatcg tcattcgtga gctgccgaac agaacaacac       240
     aagaacagct taggaaaaac tcaccacttc gaaaggtcca attctccgct ccaatgccaa       300
     ttttttcaca aaatctacgc accgatcact tatgcacaat taaacttttg attggtctat       360
     aaagcactcg aaaatactta atttttatgc ttcaaatcac aagtaaaaat taatgaactt       420
     tgttttcctc ggcaatcact ttttattact gcaccaggtt gccagaaaac catattcaat       480
     tgcggtgtaa ttattattca cgatttaaat tcacagaaaa gatcgaacac aactaattaa       540
     tttattggaa ttatgcaaca aagcatgcat gggtaataat tgagtctttc aatgccttcc       600
     ttatttgaag attgtagcgc ataaacttca aaatactgag aaacatataa aatatacgtc       660
     ttttaatagg ttaactattt tggcaacact cctgttgttc tacaggcaat cagtggatga       720
     tgtaattgtg tcaaatcaaa agtgagtaga tttgaaaagg gtctattctg attttctcat       780
     acactgagaa gaatatgaac cttaaaaatt actggcaagg tttggatttt gatccgaatt       840
     agctgatcga accatattcg gagagtgata ttcaaaaaca aaaaaaaaat aaatcctggg       900
     acatcgcaat cggatttttt ttaatacacc ccaacctctt tttacgaccg ttatcggggg       960
     gtcgtaaaaa aaatctgggt aataattatg tttttgaaaa atgcaacgtc tatatgcgga      1020
     aatactgatt cgggatattc ggcaaagttg aagcatgggt tgagaacttt ccaaaatggc      1080
     cgttcaagtt ttcatatttt ggtaatagat ggcaacactg ctcgattgtt atcaaaagag      1140
     ccaattttat gggggtgtga tatgcaaata ccaaaaaatt tcaaagatga cggtaccgaa      1200
     tgttgaccaa agttgaagga agtgttgcgt gctatacagt cggccgaatc acaaatgttc      1260
     atgtggctgg cagcactgtt caagaagaat aaagaaaaga tcaaaaccat aaaacttgag      1320
     cggaacagaa aaatagaatg cttagcaaca tagcaatact cttcaactgt aatccagttt      1380
     ttcatgaagg gttcaaaatt ttgtcgtagc tggcaacact gcttaagtga aattgcgtca      1440
     ccggcagtac aagtgtgcat gcaacttttg ttttgcggat atctcaggat cctgaccact      1500
     tagaaagatg gcgtctttgg caaagttgtt cattagctca agcgctatca ttattaaagc      1560
     tatgagattc aaaattttgc caccaggcgg cgctagtgag cgtagaattt ttgttttgcg      1620
     gatatctcag gatcctgacc acttagaaag atggcgtctt cggcaaagtt attcagtagc      1680
     tcaaggacta tcattattct ggccaagaga ttcgagattt ggccaccagg cggcgctagt      1740
     gagcgtagaa tttttgtttt gcggatatct caggatcctg accacttaga aaaataacgc      1800
     cttcggcgaa gttgttcaga agctcaagcg ctatcattat aaaagctatg cgattcaaaa      1860
     ttttgccaag ggctatcatt atttttgtca aaagatataa ggtttttccc accaggcagc      1920
     gctagtaagc acgatatttt ttgttttgcg gatgtctcag gatcctggcc acttagaaag      1980
     atggcgcctt cggcaaagtt attcagaagc tcaagcgcta tcattataaa agctatgcga      2040
     ttcaaaattt tgcctcctgg cggcgctagt gagcatgaaa cttttgtttt gcgggatcct      2100
     gactacatag acatggcgtc ttgggcaaag ttgagcttct cagcaagttt atcgaagacg      2160
     ccatctttct aggtagtcag gatcctgata tatccgcaaa acaaaagttt catgctcact      2220
     tgtgccgcct ggtggcaaaa ttttgaatct catagctttt ataatgatag tccttgagct      2280
     actgaacaac tttgcagaag gcgccatatt tctaagtggc caggatccta agataaccgc      2340
     aaaacaaatg tttcatgctc actagcatca cctagtggta gaattccgca attcagtgat      2400
     ggtggtgcta gcccttgaac tactgaacaa ttttgctgaa catcatgatc ctctattttg      2460
     aatactttgt aagatattgg tcatttataa aaacggtcgt taatctgaat ttcggtcgtt      2520
     aaaaagtggt cgtaaaacga accgtcggta aaaaaaacgg tcgtaaaaag aggttggact      2580
     gtaataccat tcattctctc ggtaataact tggtgataga gcgttcaaga gcagcaacct      2640
     ttacagacca aaaccatatc gagccattca gcttgtcagt gaatagttca attcacggtg      2700
     aaattcttga cattaaaaaa aatgaaaaca actatgcaag taccatcgtt gggggtgaga      2760
     tttggccaaa aatgcgtaag ttctcattta tttttaaata actttcgcaa tttgacttga      2820
     tatgttcggt taaatatgag aatacgttgc aaatgctgaa caaataattg aaatctgatt      2880
     attttccttt aaataggaat catttgaaaa ttggcccaaa ctcacccctt cgagaaggtg      2940
     acattgggcc aaacaaacta cactcaggaa aacgaactat cgataaacat aggaacccca      3000
     tatgaaaatt cgccacaaga aattggattg aaattcataa atttacgtca tggaaccgaa      3060
     atttgaaaac aaaaatagtt ttcgcggcaa cctggaatcg aaccaaggac cttgcttagt      3120
     tttgtaacaa aaactaccca aaaacatgat tttttaaaga aaaaatcgaa tttctttgga      3180
     ttatttaagt tttttttgcc gaatattaca tgtttcatat aaaacttatg tttctaaagc      3240
     attttgtttg aattacaagt tgaatagtgt atttttttaa catgtgcaaa tatatcattg      3300
     tttcaaaatt atttaaaaaa tgttgccaag tccttttcaa aggtttaaca aataaggaaa      3360
     accagtttca gctttaagaa tattgtttaa ctgataaaaa ttaaaatgtt gaataacttg      3420
     gtcaaaacag taaaatgcgg tgtatgcaaa gtttgaacac aattaaataa gcttcaaaac      3480
     catgcaaaaa gatttggaat cggttgagta ttcatgaagt tatggtcaaa caaagatatt      3540
     ttttcagtaa aataaaaaaa aaattggagt aaactacttt ttattgaaac tagttttgat      3600
     tttacacaaa tttgatgttc tacaaagttt tcaaaaaaaa aaatttttaa ggtaatggtg      3660
     ctgaaattac cgaagttatg gtgacttcac tgaaggccat tttttataac ttgaaaattc      3720
     acctccaaga cgcttgcacc tctaaatttt aatatttttg gctcaaactt cgaggtttct      3780
     ctactaatat gattcgaatt cagaagagta cacgaatttt tggttttgag aacttttgaa      3840
     aaataagccg caccctaaat agactgtagc gcatgtgcga gtagcaaata ggagcatgca      3900
     tgtaactcat tcaaacgcaa ctctgaaatt caagtaatcc gataatcgcg ttccgtggat      3960
     ttttcttgca gagcacaata ttatgaatca attaaccatg acgtcacgct gcaacttcta      4020
     ggttggattc gcacctgctg caagtttatt accatgacat ggcaattttt aaagccgaaa      4080
     tgctgccata gtgagattga atacaaaatt tattcgataa aataaatgaa aatgaaatta      4140
     ggcagtgtcc atttatgaca taacgttaaa atgtacaatt ttcgaccatt ccccctccgc      4200
     aacggtcttt gcatgaaaaa aaaaaattgt gtttgagccg caacgtttga gcctactccc      4260
     cctcccccta gagcgttacg taatatgtgg acggcgcctt agtctgcata aatttagtgg      4320
     cgttgtgtat tcaatttgaa tctccgctat tttatttcta actgcaattc ttttctcagt      4380
     gtagtctgta tttttctgca ttggcccttt caacgagtag aacataatga gtgacgttta      4440
     atttcaggaa ttgtcaacaa atacgaaatg ttaccaatac ataaactagt ttttgcgcag      4500
     ttttggattg ccgaagtgaa catttttgtt gccgacaata gtaattgcat tgccgataaa      4560
     agaacaagtg cctcgtgact ttggtgagga aaaatagaag attaagagaa caaaatagtg      4620
     ttttatgtat aacaatcaat aaacgaagag tgctcaagtg tagttcaggt gtctcctgct      4680
     aattgttgtg ctccattgtt gcgtaaaatt gccttcttaa aagttcagct gcttaggctg      4740
     ccgacaatac gtaagttccc c                                                4761
//
ID   DNA-15_BTa  repbase;    DNA;    INV; 401 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-15_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-401
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 926-926 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~77% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 401 BP; 120 A; 80 C; 76 G; 125 T; 0 other;
     ggtggttctt cagcactttg gagaacgatt cgatagtcga tcgatcaatt gataatttct        60
     ggattttagg acatttctca gaatttccga gcatcacatc acgctgtagt acgtcaggta       120
     tttgtacaca aaatttgacc aagaaacact ttgaaataac tccgaaagta cgtcccgagt       180
     gaatatcgca aatcgttttg cctttcgatt tgcgatattc actcggaacg tacttttgaa       240
     gctatttcaa aatgtttctt ggtcaaattt tgtgtacaaa tacctgacgt actacagcgt       300
     gatgtgatgc tcggaaattc ttgagaaatg tcctaaaatc cagaaattat caattgatcg       360
     atcgactatc gaatcgttct ccaaagtgct gaagaaccac c                           401
//
ID   DNA-16_AAe  repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   24-FEB-2012 (Rel. 17.12, Created)
DT   24-FEB-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-16_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2464-2464 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TTAA TSD.
XX
SQ   Sequence 201 BP; 58 A; 41 C; 43 G; 59 T; 0 other;
     ggtgaagatg aatcgaagcc aaacctcaaa ttttcaagag cacaaatctg gagaaccgaa        60
     catccgttta agctgaaaac ttaatcgatt ggtcactagc tggtggtgac caatcgatta       120
     agttttcagc tcaaacgggt gttcggttct ccagatttgt gctcttgaaa atttgaagtt       180
     tggcttcgat tcatcttcac c                                                 201
//
ID   DNA-16_BTa  repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-16_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-261
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 927-927 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 261 BP; 69 A; 56 C; 63 G; 72 T; 1 other;
     ccgcaatcac acgctgaatg tgggagctga atgtggcttg aatgtggaag tcatcggccc        60
     gatgcctgaa ttttgcgcgt gacgcgcaaa attcagcaac gattctcagc aaccatcgga       120
     ccaatkttga atttgtctga actattcgag tagatttgat acacatctgg atgaaaataa       180
     ctcgaatttg ctaaatttca gccgttgggc gatgactgtt gacttccaca ttcagctgct       240
     aaattcagcg tgtgattgcg g                                                 261
//
ID   DNA-17_BTa  repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-17_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-255
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 928-928 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 255 BP; 79 A; 49 C; 56 G; 71 T; 0 other;
     gaggactttt tcggtaaaag ggcgtatgag gcttgcaatg ctgctaagat tgtgcaattt        60
     tttatagcgt ttgcggcaga tgaaattcat tcacagtcga cttacttcct tacaatagtg       120
     aggaaaaact cggagcagat tcagggaaaa attcatagca gaactgtcgg ataagttact       180
     tacaactaga gaactacgtt gcacaatctt agcagcattg gaagtctcat acgccctttt       240
     accgaaaaat gcctc                                                        255
//
ID   DNA-18_BTa  repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-18_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-236
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 929-929 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 236 BP; 77 A; 40 C; 39 G; 80 T; 0 other;
     gaatcggtca gttacaaaag ggctcaagcg ccaaaaatga gaattcgaga aaaatggtaa        60
     taaccgtttt aattgacccc ttataaatct cagagctcta aaatattaaa gcgatgaatt       120
     aattaatcac attattaatt aatctgcaat ttaaaacggg ttggttcata cagtttctac       180
     tgtttttttc gtatttttat atctggcgct tgagcccttt tgtaactgac cgattc           236
//
ID   DNA-1_AAe   repbase;    DNA;    INV; 5697 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5697
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1256-1256 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. TIRs are 700-1000 bp long.
CC   Terminnal TTAA can be TSDs.
XX
SQ   Sequence 5697 BP; 1731 A; 1059 C; 1113 G; 1790 T; 4 other;
     ttaaccttcc gtcagtcgct caaaaaaaag ttacaccagc ggtcgcatcg tgtactgagt        60
     acacgcggag caattttgat tgtcaatcta aagctaggca agatagagta ttgatgtctt       120
     cggcaaattt cttcagtkca acggtaccaa tcggtcagtg gacaaatgaa actttgaaaa       180
     catcctcacc cttcagtggc catcggaatg tgtcccgggg gaaccgatga agtggacatt       240
     tcgcaatgca acatctcgat cacaaatatc tcaggatcta gattttttag caagatggtg       300
     tcttcggcaa agttgttcag taaatcaagg actaacatgt gataggctgc ttgtttcgga       360
     attctgtcac cagttggcgc tagtgagcat gtaatttttc aaacacggat atctcaggat       420
     cctgattacc tagaaagatg cggtcttcga caaagttgtt tagtaggtca aggactatca       480
     tatcataggc catctaactt gaaattctgc catcagatgg cgctagtgag catgcaatat       540
     ttcaatcacg aatatctcat gatcccgatt ttttagaaat atggtggttt tggcaatgtt       600
     gttcgatagt tcaaggagta atatgtgatg atctatttaa ttcggaattc tttcaccaga       660
     tgacgctagt gagtatgaca ttttttgaac acagatatct caggatcccg attacctaga       720
     aagttgacgt cttcggcaaa agtattgagt acgtcaaggt ctagcatgtg cgctagtgag       780
     catgctgtat attgatcgcg gctatctcag gatagcagta ccataccgaa ataccgtaag       840
     gtgggtccgg ggagataagg gtctgaggcc aagggtaata tcgatgcact gtacaccact       900
     tgagcaattc aacaagaatt gctcaagtac agtgcatcgg ctggttttag tgggtcgtcg       960
     ttggtgcggc aaccccatac tgcctgagtt accttctcag gcgtctgttt gcagatttcc      1020
     ctattgtaaa caaattctca ggatagcgat attatagcaa gatggtgtct tcagcaaagc      1080
     tgtttagtag atcaaggacg cagatatctt tggatcctga ttcctaaaaa aatgatcctg      1140
     ggatatcctc attactaaga aatattacat attcggcaaa gttgttcatt agatagaagc      1200
     ctaaatggga aggacctcaa gttttaaaaa tcatccaaca ggtggcgcta gtgagcatgc      1260
     atatttatga ttaattatat ctgaagatcc cgattacatc aaaagataaa gttttcggat      1320
     aaacggttca ctaaatcaag tacaaatttg tgatgggcct cacttggttc ggaattcttc      1380
     cgctagatgg tgatactgag takgctgtat ttccaaccca aatatctagg atcgcgattg      1440
     gataatcatg aaaatgatgt cttcaacaaa gttgtttatt ctgtccaagg ctaaagtatg      1500
     tttaacatgt tataatccgt ttgattcgaa actatgctac caaacggcgc tattcagcat      1560
     gaaaattcca taagtaaata cttcagaatc ttaactacak tcaaatttcc agtagatatt      1620
     taagggatca tcgactaatg gaaatattga gtcatggaac agatattctt tggaaagctg      1680
     attgaagggt gcatcatagt aaccatgatt tttgtttttg tttcaagtat ggtttcatga      1740
     gtcgatatcg agctatggaa catcgattca tggaggtttg acagtattta gaaatatggc      1800
     gttttctgtt ctctttacaa attgtgttgg atttttcttg aaacaaattt ttataaaatt      1860
     cgtcctcctt ttcattttaa catatttttt ttatagaatc actttccgag ttgagtcttc      1920
     gttgagtcta gtacatgata ttgaagacgg gcttacaatg gagatcaaag tacgcgtatc      1980
     tgtcmaagga tacacactct agtggaatta aacgatacag tactaaattc ggctttcatt      2040
     cacttcaagg tattctacta cactacttga aatttaagat tatcaagaaa gtagggttta      2100
     tccacagaat ttgtttatat agagaagcgc gaatactgga atcaaagaac tgtcaaacgc      2160
     ggttccaatc gagcaatagg ccttttcacg agatgtttca aataaactga ttcggaaggt      2220
     ttttgacagt cttgtatgga aatgacgatc ccgtgtatgc accagtcctc caccgataga      2280
     aacgaatgga aacacggacc tgtctcatga aaaggcctgt ctaatgggcg gcagaaagct      2340
     gttacacaaa aacaattggg tgtgagttag tgcaaagcga tatgaaagtg acgtcaccgg      2400
     ctagctcggt ctattatggc aactcacagg atgacacgcg cactacaaca ttgctcgaat      2460
     cacctcgaat gtgatagaag agtgcatggt gacgtcacga ataattcccc ttctctgtcc      2520
     ctctctcatc acgctcaatt gactgtcctg ctctttgaca ttcactgctg gaattgtttc      2580
     gatttttttt atatggaatt gacgttcact gctggaattg ttgacatatt ttttatatgg      2640
     agttttgagg ttatgtcagg cgtgcaacga tctatagtta ttgcctgtgt tgtttataaa      2700
     taaattcaaa atgctctcag cgcttctcta gtataatcat attctctggg tttatcatta      2760
     tagtcaacgc tccatgattg ctctgataat tgaagcgatg atcgactcat ggtaatatcg      2820
     cgttatgtac agtaatacct tggaaagctg ttgttgggga taattacagt gactcatgga      2880
     ggtttcacaa tataccagtg cagagaaagt tcaatgttat ttatgttgtt ataaaccgaa      2940
     gcatgtcgaa attaaacgat cttttcatga ctcatttttg tagtcatatt attcaaacaa      3000
     taaaatagaa aatcatcctt caacattgat tttattatac actttgttct ttattgatgc      3060
     tatatcataa caaatttagg aaacactttg gcatggtgtc gaaaacgaat cttaccaaaa      3120
     tcgaacagta attatgttgt gaaaaattcg gttagccgac atctcggtag attatgttcc      3180
     gagattcgat atttaaaatt accgaattct cagctcttgg gttcttggcg aaatgtttcg      3240
     ctgaggtcgg agacctaata taagtgtgta tggatcttca ttcacctgta tatcgcgtag      3300
     atatagtgcg tcttatgtga ggagaactgc tttgcgtttt acgaagtctt ttcacgcaaa      3360
     cataatcaat gtattcatca gaagttcgat taataggcta aatataaaaa taagattgat      3420
     caatttgaat ctagagtttg aacgataatg aaccttatat ctctcgtttt attttgtgct      3480
     tgcctatcaa ttcactggtg gcgaaatatt ttaacatttg acaaaacgtg cactgatagc      3540
     ccaaatgatc agaatcataa gatgttcaga aaataaaatg ctcactttcg ccgggttaca      3600
     taattccaaa tataattgcc catagcatgt cagcactttg cttactgaat aactttgaag      3660
     aagacgtcaa ctttcaaaac gatcgggaac tcgagattct gcattagaaa aatttgaatt      3720
     aggacctcta gcgtagcctg atggaagtac atctagcatc ccactgcatt ttaaattgaa      3780
     tgcggaagaa ttttgagtat attttacccc ttacacgttg gcccgtgata tacagaataa      3840
     cttgatcaaa gacgccatct ttctaatcta attttatttt caaaatggaa atataaatat      3900
     gtttgaaaat ccaatctccc gcatcttcct tatcatcctt accataaaaa tagtgttctg      3960
     tgaaattttt agctttttcg gtggtgattt aaaggtggcc caaagacaat gtaggtttat      4020
     atggaaatta ctatggaaaa tttttgagaa atgttccaga cacgttagta ctgtaatgta      4080
     agtacaaatt tatcatccca tagtgaaaac tcattcttca aaccctaatg aaggatgttg      4140
     ctgaagaaac aaatcccttt tgagctaaat tgtttgggat tttctttttt atgtttgcag      4200
     ggctataatc ccgtatgaag ctaaataaaa gcaaacaaac tcatgaatat ctcttctcct      4260
     atccgttgga atgaatttat ctcttcagca aattacttta ttatagtttg aagaatgagt      4320
     ttttactatg tgatgataag tttgtactta caatctagta ctaacgtgtt tggaacattt      4380
     tttaaaattt ctccatagta atttgcatat aaacctacat cgtctttggg ccacctttta      4440
     ataaccacct agaaaactga aaatttcaca gaacattatt tttatggtaa ttatagtaac      4500
     gaacatatgc gagattggat tttcaaactt ttttaaatta tgaaccgctc taataatcac      4560
     taacaccgtg ttgtggaaga attgcgaatc aaacggcaca tcacatgttt agtccttgat      4620
     ctactttaca gcttgccccg atcaaaatac agcatgctca caagcgccat ctggtagtag      4680
     aatttcaagt tgggtggcct atcacatggc atatcaccta ctcaacactt ttgttgaaga      4740
     cgtcaacttt ctaggtaatc gggatcctga gatatctgtg ttcaaaaaat gtcatactca      4800
     ctagcgccat ctggtgaaag aattccgaat taaatagatc atcacatatt agtccttgaa      4860
     ctatcgaaca actttgccga aaacaccata tttctaaaaa atcgggatcc tgagatattc      4920
     gtgattgaaa tattgcatgc tcactagcgc catctgatgg cagaatttca agttagatgg      4980
     cctataatat gatagtcctt gacctactaa acaactttgt cgaagaccgc atctttctag      5040
     gtaatcagga tcctgagata tccgtgtttg aaaaattaca tgctcactag cgccaactgg      5100
     tgacagaatt ccgaaacaag cagcctatca catgttagtc cttgatctac tgaacaactt      5160
     tgccgaagac accatcttgc taaaaaatct agatcctgag atatttgtgt tcgagatgtt      5220
     gcattgcgaa atgtccactt catcggttcc cccgggacac attccgatgg ccactgaagg      5280
     gtgaggatgt tttcaaagtt tcatttgtcc actgaccgat tggtaccgct gaactgaaga      5340
     aatttgccga agacatcaat attctatctt gcctagtttt agatttataa tcaaaatgct      5400
     ccgcgtgtac tcagtacacg atgcgaccgc tcgtgtgacg ggcccggtaa aaaaaagtta      5460
     cacgagcggt cgcactggtg tactgagtac acgcgtaaaa acttaggtta gaaacacgaa      5520
     gttttcgaat acttttcgtt gattttttcg aaaaatttct tccctacaag caagaagaag      5580
     agtagatctt ggaataggac caacacccgg atcaatttga aggggttttc aacgtgtttt      5640
     tcgagttttc gcaaagtgcg tgtactcagt acactagggc gaccgacggt gggttaa         5697
//
ID   DNA-1_AG    repbase;    DNA;    INV; 310 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-310
RA   Jurka J.;
RT   "Non-autonomous DNA transposons from mosquito.";
RL   Repbase Reports 10(9), 1426-1426 (2010).
XX
DR   [1] (Consensus)
XX
CC   3bp tsd (taa/tta). >97% identical to consensus.
XX
SQ   Sequence 310 BP; 91 A; 60 C; 67 G; 92 T; 0 other;
     ggcccgtgtc tgtgctccat cggatgcgat tttatcggaa ggcctgtcaa aattttatat        60
     gggatttgac agataacgtc ggacgtgcga tttcgtcgta cgacggaatc aaaaaatttt       120
     gatttcgtcg gacgccgcat ccgattttat ctgtcaaact aaatgtgtgg tgttttgtag       180
     gaacaatctc aacttaattt ttcataatcg ttatattatt aaaatcatcc aaataatcgc       240
     aatattatac gaaaaagcgt ttgacagcac gtgcgataaa atcgcatgcg atggagcaca       300
     gacacgggcc                                                              310
//
ID   DNA-1_BTa   repbase;    DNA;    INV; 504 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-504
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 632-632 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are unknown.
XX
SQ   Sequence 504 BP; 139 A; 112 C; 111 G; 142 T; 0 other;
     tggagatgtt gcatgtgtga ggaatttgcg atttgactgt tgattcttat gtaaaagttc        60
     gcgagaaaca cgatggtgcc actggttttc tctgaaatca actcccaagc tcaaaaaaag       120
     ctctcaagtt gaggccaaaa tggaggggat atcccaccct accctgagag tccacctcta       180
     catcaagaca aactctccat gcaaagatag ggagcaaata cattagcagt gatgccgtgt       240
     tttcagtttt ggagtcccca aataaagtgg cagccctgtc aatgtatttg ctccctatct       300
     ttgcatggag agtttgtctt gatgtagagg tggactctca ggatagcgtg ggatatcccc       360
     tccattttgg cctcaacttg agagcttttt ttgagcttgg gagttgattt cagagaaaac       420
     cagtggcacc atcgtgtttc tcgcgaactt ttacataaga atcaacagtc aaatcgcaaa       480
     ttcctcacac atgcaacatc tcca                                              504
//
ID   DNA-1_BTe   repbase;    DNA;    INV; 702 BP.
XX
AC   .
XX
DT   01-FEB-2011 (Rel. 16.02, Created)
DT   01-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   DNA transposon from the buff-tailed bumblebee.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_BTe.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-702
RA   Jurka J.;
RT   "DNA transposons from the buff-tailed bumblebee.";
RL   Direct Submission to RU (15-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. TTAA tsd.
XX
SQ   Sequence 702 BP; 242 A; 104 C; 92 G; 264 T; 0 other;
     gggggtgtcc tgaattagaa tgttctaaaa cagcgtcttt ttgtgatttt ttttagaagg        60
     gaaagaaaga aacgaagtta ttgaattttg aggtatggtt ttatatatat ttaacgaata       120
     caaaaaaatt ttttttaaag taaaaaaaaa attataacag atttctaagc ctatttcatg       180
     ggctgcagtt ttcaatcggc gggaaagatc cacctcgtaa ttcttgaccg aaacgaaaaa       240
     ccaaaaaagg attaaattat tatatatttt tcttctcgat gaactaaaaa agttcgtcaa       300
     aaagtttatt taaataattg ttatagcacc ttaaagttta ttttttcttt ttataaaaca       360
     cattttttct ttaaacccgc caaaattttt aatttcacac tattttctgc ctttttttag       420
     ttcatcgaga agaaaaatat ataataattt aatccttttt tggtttttcg tttcggtcaa       480
     gaattacgag gtggatcttt cccgccgatt gaaaactgca gcccatgaaa taggcttaga       540
     aatctgttat aatttttttt tttactttaa aaaatttttt tgtattcgtt aaatatatat       600
     aaaaccatac ctcaaaattc aataacttcg tttctttctt tcccttctaa aaaaaatcac       660
     aaaaagacgc tgttttagaa cattctaatt caggacaccc cc                          702
//
ID   DNA-1_CQ    repbase;    DNA;    INV; 3260 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3260
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 42-42 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >77%
CC   identity. subterminal inverted repeats. Including (TTTCTAAAA)n
CC   microsatellites at the middle.
XX
SQ   Sequence 3260 BP; 1064 A; 530 C; 449 G; 1216 T; 1 other;
     taagggtgga ttttcatgga tttttcgatg accgacatcg aaagcggctt tcgatgctcg        60
     tggtcatatt ttgccgaaaa ctcattttta tcaatcaggt taaatcgcaa aatggtttgg       120
     attgatattt tatggtagta taagcacaaa caaacacata cccatcgccg gaaagttgcg       180
     aaaatgcgat tttccgactt ttcattttcg atgcacgagc atctttagac gaccgacatc       240
     gaaagcatac tcacgaccat gctttgctaa aatgtccgtg cattgaaact cgatgctcgt       300
     tcagtgcctt tttgctacct cagcggcacc ctagacacaa acctaaataa cgctttgaaa       360
     cgcttggtac gggatgggaa tgaaacttga cgaaacaaat tctatctgtc aaaccagacc       420
     ttgtcaacaa tcaaaacagc tgattttgca tggtgaaatg gtggacattg ttttgcagga       480
     ggaatccgtc caccggtggt tggatttcgg agcattgttt taccggagga atccgtccac       540
     cggtggtcgg atttcagggc attgttttgc aggaggaatc cgttcaccag tggacggatc       600
     gcctggccaa gttgacaaga ggaacttgtc caccggtggg gatttcgggg cattgttttg       660
     caggaggaat cggtccaccg gtggccggat ttctggacat tgttttgcag gaggaatccg       720
     tccaccggtg gttggatttc ggggcattgt tttgcaggag gaatccgtcc accggtggac       780
     ggatttcagg gttttgtttt gcaggaggac ggatttctgg gcattgtttt gcaggaagat       840
     tctgtgcacc gatggacgga ttgcctggcc aagttgacaa gaggaactgg tccaccggtg       900
     gttggatttc ggggcattgt tttgcaggag gaatccgtcc accggtggcc ggatttctgg       960
     gcattgtttt gcaggaggat kccgtgcacc gttggacgga ttgcttgcct aaattttgct      1020
     taaatttctt aattccaaat tccaaaattt ctaaattctt aaaactaaaa tttctaaact      1080
     aaaaattcta aattttctta aatttcaagt attctaaaat ttcaaagttt ctaaaatttc      1140
     aaagttttct aaaatttcaa agttttctaa aatttttata atttctaaaa tattaaaaat      1200
     atataaaatg tctttactta ctttaatttc ttcaattcct ttaatttctt aatatttata      1260
     atttcctgaa tatcttaaat ttcttaaatt tctaaaattt cttaaatttc taaaatttct      1320
     aaaattctaa atttctaaat ttctaaaatt tctaaaattt ctaaaatttc taaaatttct      1380
     aaaatttcta aaatttctaa aatttctaaa atttctaaat ttcttaaatt tctaaatttc      1440
     ttaaatttct aaatttctaa aatttctaaa tttctaaatt tcttaaattt ctaaaatttc      1500
     taaaatttct aaaatttcta aaatttctaa aatttctaaa atttctaaaa tttctaaaat      1560
     ttctaaaatt tctaaaattt ctaaaatttc taaaatttct aaaatttcta aaatttctaa      1620
     aatttctaaa atttctaaaa tttctaaaat ttctaaaatt tctaaaattt ctaaaatttc      1680
     taaaatttct aaaatttcta aaatttctaa aatttctaaa atttctaaaa tttctaaaat      1740
     ttctaaaatt tctaaaattt ctaaaatttc taaaatttct aaaatttcta aaatttctaa      1800
     aatttctaaa atttctaaaa tttctaaaat ttctaaaatt tctaaaattt ctaaaatttc      1860
     taaaatttct aaaatttcta aaatttctaa aatttctaaa atttctaaaa tttctaaaat      1920
     ttctaaaatt tctaaaattt ctaaaatttc taaaatttct aaaatttcta aaatttctaa      1980
     aatttctaaa tttctaaaat ttctaaaatt tctaaaattt ctaaaatttc taaaatttct      2040
     aaaatttcta aaatttctaa aatttctaaa atttgatttt ttaaaaattt ctaaaatttc      2100
     tttaattctt ttaattcctt aaatttctta attcttttat tttctttaat ttcttaaatt      2160
     tcctcaattt cctaaattac ttaattattt ctttaatttc tcatatttct tgaattattt      2220
     atttcttaaa tttctaaaaa attaaattac ttaatttttt tgaaattcct gaaatttttc      2280
     caatttttag tccactctat agagaatttg cagctaagct aaaagacaca tgtcgccacc      2340
     tatgaacaaa tagcgtaaac ctatgatttt tttttgaaaa aatgtgtttt ttccttcata      2400
     atcaacattt ttattaaact tatgccggat tcggatgaga aaaaatattt ccaacaattt      2460
     ggtgtacaac tttccaatat ttgtttgatt tttctatgag aaaactgtaa atttagaaaa      2520
     agatagtaat ttggactatt tggtaagaaa gtctgtcaaa aatcaataaa aattgttgaa      2580
     tatacgtaaa cacatctgtt atcaattata aaactgttta tttcattgat ataaacgggg      2640
     aaactcattt ttagtgttcc aaaacatgtt tttttttaga aaaagtcaca tatttctgcg      2700
     cgcccaaaaa atgatgttca ttattttaaa gcaaaaaaaa tttctcgtct tttgcaacca      2760
     gtttcattaa gattgatgca gggaaccatg agaaataagc aattttgttc ttcaatccag      2820
     cagaaagaaa tacgattttt ggcaagtaac ctcattttgg cgccacctac atttgaaaca      2880
     cagtcgcgct gcaaaacctc aattatctct catctttttt gcatgatttt tcgcaacgaa      2940
     catgaggcaa aaggttttat ttaattaaat tatgcgctag tctaatcatg cgcctttttg      3000
     aaaaagattt attgaacaac atcagcttat ttcaaaagtt gttctggaat tccaatcgcc      3060
     acgcaatgct gctttgttta cgtttgaatc tgtcattttc catccttcgt taacttgcat      3120
     gcaagtgttc cttattccgg aaagtcgatt ttggggttgt gtctaagcta aatgaagtaa      3180
     cgcaagccac gagcatcgag ttggttcgat gctcgtgctc tcgatgtcgt tgcacaatcc      3240
     atgaaaatcc agcctaagag                                                  3260
//
ID   DNA-1_DBp   repbase;    DNA;    INV; 573 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.05, Created)
DT   21-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-573
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 580-580 (2012).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. 8bp TSD.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 573 BP; 143 A; 110 C; 109 G; 210 T; 1 other;
     cagtgntgct catcccattg ctctcgctgc tcatttgttt tcgcaaatgc tcatgcatac        60
     ggagttgtgt gcgactgctc acgccataag gttccgttgc tcacgccata agcttcgttg       120
     gtcccagcat aggcaaaggg caattacaat aacaattttt cgtgttttcc ctattctcct       180
     caatcgtgct aatccgaatg aattttgttg ttggagtgcc gaaaactttt cactgcaaga       240
     aattcattct tgtttttgtt tctgccaaaa tggtcgacct gaagcgatga atttcttctt       300
     cgcagaacat tttttttaag taagaagctc tgcattattt gtcatagtat aataataagc       360
     tgttgtaaaa aatgtagggc ctttttttaa ttgctgtaat aaaatgtatt ttttattata       420
     ttgatatttt taaacccctt gtgaatgtta ctataatttt atttttcagt gcacccacat       480
     ggatgggaaa aaaattctcg caccaatgta ttggtgattt tttgcattgg tatgggagtt       540
     tgctctcccg tatgcagagc ttgggcacca ctg                                    573
//
ID   DNA-1_DEu   repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.06, Created)
DT   13-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-1_DEu.
XX
NM   DNA-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-400
RA   Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 750-750 (2012).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to  consensus. 8bp TSD.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 400 BP; 91 A; 94 C; 78 G; 136 T; 1 other;
     caggggtgct caacgcctat gctctgagtg ctcatttgtt tttgtaaatg ctcggagcat        60
     agggacttgc tcgcccataa gctttgagcg ctcgcggcga tattacacta acaatttttc       120
     gttttcctct ttccgcctca ttccgtcgcc aaacgcaata tattttgttc ttgtttcttc       180
     ctggaacatc ttcgaacact tgcactggaa ttcattcctt ataccttctg tttgcaattt       240
     agagtntatt tcgcatttgg cgggtcagta aaatgagtga tgaattgttt ctctcagtgc       300
     acagctgcaa accaacacaa aaacgtcact aaatatgtgc acgctttctt gtatttgtgt       360
     tagtaaatgc tctgccgtaa gacgattttg agcacccctg                             400
//
ID   DNA-1_DPe   repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   14-MAR-2012 (Rel. 17.08, Created)
DT   14-MAR-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-732
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1375-1375 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5bp TSD.
XX
SQ   Sequence 732 BP; 196 A; 175 C; 161 G; 200 T; 0 other;
     taccaaagac tatacaatac caagatgttg catgagcgac caaaaagctg ttctatggcg        60
     ggtcctaaca ttagaaccca aaaggcacga gggagcgcgc ggggtttcaa ttcccttttc       120
     gcctgtactt cgtctctacc gcgaccccgc tgcccatcgg tttcgtctgt tcggcaattc       180
     tggactctcg agcctcagca ccgtcgaagc ggtggtcgcg gatcgccgat gtctttggag       240
     cggcacagtg ggacctttgg ccgtctcagc ttgctaaatt agttagtgaa tatgagttca       300
     ataaatattt gcacactgaa aaaatgttaa actttgagtg cttatatctc ctaaactaaa       360
     actatcttga aaattcgatt ggaaaattct ctattagatg cgtacattaa atttatctaa       420
     agcactcata caattttttt actatttcgg ctgagtcccc actgtgccgc gccaaagaca       480
     tcagcgacca cgctgcccta cggtttcggc acgcagacga ttcatatttt gtttttgtat       540
     tctttctctc gagacacacc gactcgacgc tgaccgaggc attgacgaag ccgagtagca       600
     tttcggaggc gaaggtagcg taaaagagaa ttgaagtaat agccccgcgc gcccgtacca       660
     tgaagcgtca aacgaaaatt gaaaaagaat ttgttcctca tgcaacatct tggtattgta       720
     tagtctttgg ta                                                           732
//
ID   DNA-1_LMi   repbase;    DNA;    INV; 10412 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   09-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-10412
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2955-2955 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. Long TIRs. TSDs are undetected.
XX
SQ   Sequence 10412 BP; 3023 A; 2142 C; 2098 G; 3148 T; 1 other;
     gtacactctt tgacaaaaaa cctggccgcc ggccggccgc cgctgagcct aagtccgagc        60
     cgatcgcgac atgggacaat aaacgtggcc gcgctgattc gctctaagtc cggctatctg       120
     cacaatctgg caacactgta gactgcggga gttcatacag tacttcttgt gtgcagttag       180
     aagacgtgta ggtcagctac atccgtggtc tcgcggtaaa gtgcgtgact tgcacgtgag       240
     tcttagcgat cgaaaccgac tgttgacaaa aattttaatt tcacgtccct cgtgcatgct       300
     gatgccacat gtgtaagggg agcatatgcg taacgtattt cattttttga tacactggta       360
     ataacatttc ggcccaataa catcgctgcc tctggccgca gcacttggca gagctctccg       420
     cggcccactc gccggcagca gcggtggcgg cgctacacag cgctgcctcg ccctctgccc       480
     acagcgcctg ctgccgctca tcgccctgga tatgtaaaat gctgtagtgt tgctgagtgg       540
     tgatccacaa aaaaggttgc gatgtgtatt tcagacacga tatcaacgga gcagaccacc       600
     cattttgaat gatgagcata ttattacact aatacataat acattagaga ggcaaaaaat       660
     tgtcatagtc gttgatccaa tcaaatggca ctctacgatg gttaacactt atttgtggtt       720
     taaatctcga tccttttcct ttcagaaaag cccttcatgt aatttgttat tgtcatcagt       780
     tcatatgttt tcatcaagac acagtgcgta actgcactat aatgttttag tgtcgttgtt       840
     tgattcctta cggtaaatgt atgagctaaa ttatgtgaat acgtttcagc gcacgttcta       900
     aagcaacaca ggcacactgc aaggttcgtg tcttcatgtc tcatttctac agcagatatt       960
     tcgcagaaga tattattgtt cacttctccg taagtatccc gcgtggccgg ggtgaaaaat      1020
     cgatcgatgg aggtcaattc gaatttcttc aaaggcgttt gtatggtgaa gcaaagaaga      1080
     catctaatac catttccata atttggagtc gacctttctg aaagacttat tgtataaagc      1140
     ttttcttctg attccgttaa agagtttctt cttgcaatct gcagcgtata aagtaaaata      1200
     aaacaaagta aaatgaaata ccatccccaa acgcactgtc tccaaccagg attagaactg      1260
     ccgactcaca ccagagttgc atcacaagac acaagcagaa ccacacagcc aaccacacgc      1320
     tgccgcctgg tgccctcagt ctctcacata ttcaatgctg agcctctaac gcatcgcgaa      1380
     agataacctg aaagtcacct acacgaataa cagcattcct tgagtgcaaa agttaaattt      1440
     ctgtctctca tatcacatgg gcattataca gcatgagtca tgaaagtaga agaggaatgt      1500
     caagtgaact tagcgagaca attcagtacc acttgcggaa gtaactgcac tgtcacagtg      1560
     ttgccaaata ttagcaacga tgttgccagt tcttagctgt actaggaaga cctgtgtagc      1620
     gataagcgac gcgaaatcgc gctcgtctca tacgggcttc tagaggggag tcgcggattt      1680
     tggttaatac gcggcgctat ctcctgatag tttccatcgt cacacttagg atgcagatat      1740
     ttaattcgtc caatgaggcc gaaaccagcg ttaaatcttt tgaagcttta cagcattatg      1800
     gtataatttc agcaaatgac tagagaagtt aaaaatactg atattgtgct tgcaacatac      1860
     ggcaggtcaa agactgagat atgtaaactt ccatcacgat tacagtttca cccccccccc      1920
     ccaaaaaaaa aggactaaaa caattacttt gttacaactt ttttttcatg aaaagttact      1980
     ggaaatcaat gttgccccat ccgtcaccgg gaaaaacttc gcatcttgaa agcgactgcc      2040
     tttcaaaatg cagccttacg accgtacaag taatatttca tgtcttctac tgaatacata      2100
     aatgtgttgg tttgcttgaa agccagaaga aacatagtta actgattatt tgtgcaacac      2160
     agtaattagt tcatttgagg attcagaaga caggatactt aaaattacgg ccatgaacac      2220
     agaaactaaa ctgtatatgt gggaaatgtg caattctgag gtttttcatc tgcaaacata      2280
     tacatataat ctatagacta ctaaccagct tattgatttc gcagtgttac agccttgttg      2340
     ggccaacaaa tgatgatgag aatccgaacc catgtgtctg atggattctt cgaatgttgc      2400
     cacccacgac ttgcatgtgt tgttgcttag tatctgtcgt cacgatgtta aatcaacaga      2460
     aattattaca aactttttgc ctactttctc ctattgtcct attttccgtc aaaccacaca      2520
     ttctttctgg tctcttggcc acatgggaaa gaacgctttt gcaactgaat taatgatagt      2580
     aatcaatgac gtttaccgca ttacagcaga atgataacga ttacaataac aatagaaaat      2640
     gccgatctct tggttgacac actgcaatga gttttggtat ttcgttgctg aataccgttt      2700
     aggacatttt tcagaggaga aaaatagacc tgaagccaca cacatcacta gtacaacgat      2760
     atctcactaa tcaactatgc ttgctgtaga tcaggagacg agaatggcgc caccgagcta      2820
     aaatgagagt actggttcag ttgtctgaca tttgttggca gttaatacag acagtcccga      2880
     cataaaacac aaaattgttt gcaatttaag caggggtcga ccttcctgcg gtcgaaaatt      2940
     taattcagga taacagagtc atataaatgc aatgactaat ctcatatcct cagaatattg      3000
     gaaaatacct cgaatgctgg aactgaggga acgatcagag ttgcctagcg tcgtaagcaa      3060
     tactgctaag caataggaag aacttcttgg gcatcccaca atatcctcat tcctacaaac      3120
     agcatgcttc aactggcttt tagccatgcc gcgctaccaa agcccattct aagtaaggct      3180
     tcagtccgaa agcagacaac agcattgaaa aatgctgatg aatagatgac ttaccctcat      3240
     caacttccgg ggagagtttc ttttaacaaa acgaagaaag tgcgaaacga ctactttctc      3300
     caaagttcct acggactgtt gtcccaaaat ggacgtatat acgttcagtc ttgtcatacg      3360
     cggctcacat tccaggaata tcaccaaaat gagcatctgg cgtgtaccgt cctagagcag      3420
     ctattacgca agtttttacc gataatcata aaattgacca gacggctttt gctgcagaat      3480
     atagcgactt ctattagatc cgcgtaacct ttcccgataa gaaactgttt tcttcgtata      3540
     gtgatgcccc tgtttaggtg aattataatg ttatgtttaa tgttgcttca gaagaacttt      3600
     ttgccttaaa tatttttatc tttgcaggtg attcaaagta attgtaataa ttagtttccc      3660
     ttcaaattac tccattcatt tgatctatta tttgtaaagt aattgcaacc gccaaaagtg      3720
     aaattgtcct ataaaccaaa ccgtttggtt actttaggtc tatcgtccat gggcagaacg      3780
     cttccatctg aaatatctcc acgaaaggca gagaagcgga cggttctctg tcatagtaga      3840
     gttcggctcg ggtagccggt cctctgtgga gaagagatgg aattatatgt tgaagaaaga      3900
     agtcatatct aagaaacttg cctattaatt ttatttttct cctgtattta tattttttca      3960
     ggcttatatt cgcctttact tctcacaaaa taatgagata tctttttctc tgcagtagct      4020
     acctttggtc gtttccgacc gcattacatt ttccgttgtc tctagatgga tcatactttg      4080
     tctctgccgg tcccagatct cacgtcgaaa gaaaaatgtg ctccacatca ttcatttcgc      4140
     aggaggcggt cgtattttta ccattggtat atttacttgt acgaatattg ttcgtaaccg      4200
     taaatagttt gctcttgctg ttcgtctcct taatattgtt aaacacacat tttccctata      4260
     attctcctcg tgaagtggat gaactgctgt gctttattat tgttagtacc attagttttt      4320
     atttcaagtt gatctttgaa tttgtatttt ttattaccgt tacatttgtt tgttcaatat      4380
     gtttcacagt attgaagatc aacaagttct catatccatt aacataagcg tgttagagct      4440
     aatgtataac ggtcattttt gtcttgtttc atccgtaaaa cttcctctca aaatgtggaa      4500
     cacttctttt aacacccttc atttgaaacc gatatgtagg cagaggacat tcacggctta      4560
     ctcatttatt aacttcattc ataatgataa tttggatcag atttatttac aaattttgta      4620
     ctcagtccat ttaatttttg taatagcggt aaaattacag ccctgcgcat tctacggcat      4680
     ctgttctaaa tcaatgaata agagatacgt caatacgttt atttactatc ttttaacaag      4740
     caacagtgca attgctttcc ttaatactgt tttaaaccat ggcacaattc atcgatcaat      4800
     tttaatcgtt gtaacacgtg tttattaggt tgctttattg tctattgtgt gtttgttaca      4860
     aattttacaa ttgattttat actaacgata ggccagaaac ttaattaacg taactcagaa      4920
     ccgtgtgaca atgcaatatt tactcgcatt cgtttttgct acggagcgag ttggtgcagt      4980
     ggtaacacac tggactcata ttcggctgca cggcgcttcg aactggcctt cggccatttg      5040
     gatttgagtt ttccatgatt ttgctaaatc agtctaggca aatgccggaa tggtccctgc      5100
     ggcagggcac ggccgatttc cttccacatc cttatcataa caatccgagc ttctgcttcg      5160
     ctctaatgac ccccttgtcg aggggacgtt aaatcgtaac cttccttctt tctttcgtgt      5220
     ctcctgtgca atagagctta ctttgtttat gtttccgtgt gttggtacaa attttgcagt      5280
     tcatttcaaa ccaacttccc actgaacaag agaccttaaa ctttcaactt aacttagaac      5340
     tggatgacac tgctacatta acgccatttc ttaattggtg tgtggtggag ggcacttttt      5400
     atacaactgc tgtttcctcc tgtttctctt ccagtcgtga atggttcgcc gttaaaacta      5460
     tttctggtaa gacttagtgt gagttcatat cgccctatct tttaccttcg cgatctttcc      5520
     gtgactaata cgtaagaggg gtcaggtgaa atagaaataa aacaaattta tcgaatgtct      5580
     ctgttgtatt ctcatgaaaa cgtttgaaat tgaatgaaaa atttcacaca tacaaaattt      5640
     gaaaagtgta aaataatcat ttaaatgaaa aatgcatata aacgtggttt taaaatagac      5700
     taagacgtat aaagtaactt ttgtccactc gaaaattgct accgcgttaa agatagttcc      5760
     aaaaaaattt tcgaattttt aatagctatg tcagtcatca tagtaacact ggaacataaa      5820
     gtgttcttgc ttcatgagta atgctagcag tagcgtttag tcgccaccga cttgaagggt      5880
     aatttatttc attaactttc tgaagtcgat aagaggtatg acgcggcggc ggcagccacg      5940
     gtcgttttgg taaatgcggc acaacgagcg agcgaaggcg cgcgcatttg gaaacggaga      6000
     aggcggagcg cgcctgctgg agggaaagga tagttgtcgt tctgaataga cgaagccatc      6060
     aaacggagtc taacagatgt tcggtagacc tccccgaact ttcgcgtttt gactgtaaca      6120
     taagaaataa atgaaattca cgaattgtat tgaacattgc aatggttagt aaattaatgt      6180
     cgtccgctat ctgccgacga taccgatcga atgataatct atcgacgtga gatacatggc      6240
     acctaaaagt cgccataaag tttgtactct gaaacctatc accgcgctgt agtgagcaaa      6300
     ttgcaactaa aactatgtct gcaacgcatc cggccatcag actacgtaac attttatgaa      6360
     atcaacgagg caggcaacag taagacaggt tcggaatcta ttgagcacct catcaaggaa      6420
     cgtgctcaaa attagtgttg gattcaaatg gaacgctatt taacgtagca agatgttcta      6480
     tcaataacag gtcgcttgta atttccatat tgacctgcgg acattttatt ttatcaggaa      6540
     gcaaactcga aggaaactgg acaaaatttg agtatttagg aagacttttc tgcgacaaat      6600
     tgtgagtctt tttgttattt aatggagtaa agtaaacata acgataaggc ctacctagga      6660
     ttcaaccata aaccgagaaa caaaactgga aatacgctca atgaggtatt cattgatttt      6720
     tttctctctt taaaatagct ggccacgtgg catatatgca atttggagag cacagtgtct      6780
     cgagcctgag tggaattacg gatcctaaca tgcaggacgc cagctacaaa aactcgttca      6840
     tcaggccacc aatgtaatca agattttcca acgtcgtagc tagggcctat tgtttcgcaa      6900
     ctttggcatc atgtagatgt gagtctgatt tgtaattctg cagtcagttg actttttctt      6960
     gtcacctcca ttaaatattt tgaaaaatta atatcagaat atgcacattg tagtagttaa      7020
     ctgaatttgt gttcaagaag gtcgtttcat acattaacta ctcctactct ctttcacgtt      7080
     gcgagcaatc tgcctcagct gtgagtaaat caatgaggta gggtttacag cagtaatgtc      7140
     tagctgtata atagtcactt tctaaaaacc tagctcattt cgaaatcggg tcagttttgt      7200
     tgcaaaagct ggatctcatc atttcgtctc gttacgtctt taatttatcc gcttactgtc      7260
     aaacaaaacc attcgtgcca actgtctcct ggcaacctca tagcagatgc catagccacc      7320
     tacttcaaga atatcaagtg acatcacaaa caaaacgaaa gaacattttc ttaaatgaat      7380
     ttatcaattg ttctaaaatg atggtaaaat tttaaatatg atagaacaac ttatttgtaa      7440
     attacttcaa atgttgtcat cccataaagt aaataataaa ttctgaagcc gcgtcagctg      7500
     ttttttattt tattaagatc cttgctttac aggtccacga ccgttttcac gtttttaaag      7560
     acccatcttc aggtgttaat ttttttcata tgaaaattca ttacagtgac ccaaggttct      7620
     aattgctttc atctgtcatg ggaataaaat ttcattaata ggcccggata tatggaacag      7680
     tccaacagaa attatcactg tcattcagaa taaaaaccaa ggacgttaaa atgtgggaca      7740
     aatagtcgcg taattttgat tactgtattt ccatgaaacc agtagatcgc cgacgaagtg      7800
     aagggtacaa accaaagaag actgtccaaa gaatcgaaga aaccgataga tgaggatttg      7860
     tattttgttc atctttgcat caagtattac ggcaaggtaa aaaaaaactt acgaatatgc      7920
     acaaccaccc actcctctgt tttgtttcag cttcagagga ctaaattcaa aactgcttgt      7980
     gtaaacatga tttgattata atactcactg catcgatgct ttgggtaatt tccataatag      8040
     ctgctcattt aggtaatatt ccttgaatgt gagcgcgtat gacaagactc aacgtaatac      8100
     agtccgtttt cggacaacag tgcctagtaa cttggagaaa atgatcgttc gcactacttt      8160
     ttcgttttgt tacaaaaagc tctcactgga agttggtgag ggtaagtcat cattcatcag      8220
     catttctcaa tgctgttgtc tgctttcgga ctgaagcctt cttaatggct ttgtagcgcg      8280
     catggctaaa agccagttga ggcagctgtt tgtaggatga ggatattgtg ggctgtcgct      8340
     ttcaagatgc gaagtgtttg ataccttact gtttagtgac ggatggggca acgttcattt      8400
     ccagtaactt tcatgaaaaa aaagcttttg tcaaattaac aaagtaattg ttttagtctt      8460
     tttttggggg ggggggggga aactgaatcg tgatggaagt ttacatatct cagtctttga      8520
     cctgccgtat gttgcaagca caatatcagt atttttaact tctctagtca tttgctgaaa      8580
     tatatcatat gctgtaaagc ttcaaaaaat ttaaacgctg gtttcggcct cattggacga      8640
     attaaatatc tgcatcctaa gtgtgacgat ggaaactatc aggagatagc gccgcatatt      8700
     aaccaaaatc cgcgactccc ctctagaagc ccgtatgaga cgagcgcgat ttcgcgtcgc      8760
     ttatcgctac acaggtcttc ctagtacagc taagaactgg caacatcgtt gctgatattt      8820
     ggcaacactg tgacagtgca gttacttccg caagtggtac tgaattgtct cgctaagttc      8880
     acttgacatt cctcttctac tttcatgact catgctgtat aatgcccacg tgatatgaga      8940
     gacagaaatt taacttttgc actcaaggaa tgctgttatt cgtgtaggtg actttcaggt      9000
     tatctttcgc gatgcgttag aggctcagca ttgaatatgt gagagactga gggcaccagg      9060
     cggcagcgtg tggttggctg tgtggttctg cttgtgtctt gtgatgcaas tgtggtgtga      9120
     gtcggcagtt ctaatcctgg ttggagacag tgcgtttggg gatggatttc attttacttt      9180
     gttttatttt actttatacg ctgcagattg caagaagaaa ctctttaacg gaatcagaag      9240
     aaaagcttta tacaataagt ctttcagaaa ggtcgactcc aaattatgga aatggtatta      9300
     gatgtcttct ttgcttcacc atacaaacgc ctttgaagaa attcgaattg acctccatcg      9360
     atacgaattt ttactactcc cttaggaccc acatgctagg ggatgcttac ggaggaagtg      9420
     aacataatga ttaatatagt tcttcatgcg aaatatctgc tgtagaaatg agacatgaag      9480
     acacgaacct tgcagtgtgc ctgtgttgct ttagaacgtg cgctgaaacg tattcacata      9540
     atttagctca tacatttacc gtaaggaatc aaacaacgac actaaaacat ttagtgcagt      9600
     tacgcactgt gtcttgatga aaacatatga actgatgaca ataacaaatt acatgaaggg      9660
     cttttctgaa aggaaaagga tcgagattta aaccacaaat aagtgttaac catcgtagag      9720
     tgccatttga ttggatcaat gactatgaca attttttgcc tctctaatgt attatgtatt      9780
     agtgtaataa tatgctcatc attcaaaatg ggtggtctgc tccgttgata tcgtgtctga      9840
     aatacacatc gcaacctttt ttgtggatca ccactcagca acactacagc attttacata      9900
     tccagggcga tgagcggcag caggcgctgt gggcagaggg cgaggcagcg ctgtgtagcg      9960
     ccgccaccgc tgctgccggc gagtgggccg cggagagctc tgccaagtgc tgcggccaga     10020
     ggcggcgatg ttattgggcc gaaatgttat taccagtgta tcaaaaaatg aaatacgtta     10080
     cgcatatgct ccccttacac atgtggcatc agcatgcacg agggacgtga aattaaaatt     10140
     tttgtcaaca gtcggtttcg atcgctaata ctcgcacgtg caagtcacgc actttaccgc     10200
     gagaccacgg atgtagctga cctagacgtc ttctaactgc acacaagaag tactgtatga     10260
     actcccgcag tctacagtgt tgccagattg tgcagatagc tggacttaga gcgaatcagc     10320
     gcggccacgt ttattgtccc atgtcgcgat cggctcggac ttaggctcag cggcggccgg     10380
     ccggcggcca ggttttttgt caaagagtgt ac                                   10412
//
ID   DNA-1_RPr   repbase;    DNA;    INV; 786 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-786
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3214-3214 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 786 BP; 297 A; 110 C; 153 G; 224 T; 2 other;
     tacagtcgac tctcgataaa tcgaaatcca agggactaca agaaaaattc gaattatcga        60
     gacttcgaat tatcgagaag ttcgaattat caagaagggg gaaaaaaatt cgaattatta       120
     agagttttta ttatgtatat acgtatgtac atacgtatat tgaaaatacg tatgagctta       180
     cctaagtttt agacatatat agcctcaagt aaaaaagtaa aaataatgaa aacgacaaaa       240
     aagaacaaaa aaattacata tgtattaaca tttcaataaa taataatata catatgtacc       300
     taattaaaaa aatgaagaac agttttttgt tncaatgtgg cttgacttag tcaagtgact       360
     tagaattgta gaaagcgttg atggtggaat attgaaagtt ttggcgatat cttctttttt       420
     tcgaaccact tttcacggcc gcgatantgt tttctttgtc ggacacagta agggagacgt       480
     acttcccatc gtgacaaact aagaaagaga attggaaagt taaactgggc tgaaaggagg       540
     gaaacattac gcaggaaatg aacaataagc ggaaaatgag aagtaaacat tactagggaa       600
     aattcgaatt ataaagaggg gaagcggcct cgttcgaatt atagagcctt ctctccccct       660
     gttgttaaga aaaggatttc gaattatcga gcgtatctaa atacactgaa ttttttcgat       720
     ttaccgaagt tagcagctgt agagttcgaa ttatcgaaaa attcgaatta tcgagagtcg       780
     actgta                                                                  786
//
ID   DNA-2-1_NVi repbase;    DNA;    INV; 920 BP.
XX
AC   .
XX
DT   10-APR-2009 (Rel. 14.04, Created)
DT   26-SEP-2013 (Rel. 18.09, Last updated, Version 2)
XX
DE   non-autonomous DNA transposon - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TSD 2-bp;
KW   DNA-2-1_NVi.
XX
NM   DNA-2-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-920
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 760-760 (2009).
XX
DR   [1] (Consensus)
XX
CC   It includes a tRNA-like sequence. 13bp TIR and ~90bp subterminal
CC   repeat.
XX
SQ   Sequence 920 BP; 244 A; 188 C; 203 G; 285 T; 0 other;
     ccctagtgga aatggattgt gtgccaaagt gtgtcaaagt gtgccaaagt gtgccaaagt        60
     gtgccatagt gtgccataat gttccaaagt gttcaaattc ggaaatttat tacactttgg       120
     cataccttgg tatactttgg cacactctgg cacactttgg cacattttga cacacatggg       180
     tttttcggaa attgaggact tagaaaattt ttgcacgaaa tctggaaaac ttgtattccc       240
     gacggattcc tctgttgagg catgtttttc caacatttac ggcggacagc agctttaagg       300
     caattacggg caattgttaa ttaatattgt aaaagtacta agtatctaaa gctgcttgaa       360
     gtacatgagt ttaaattttt gtattaactg taacgagtac ttgtggctca gtggtagacc       420
     ttcagcttac taacccaaag gatccgggtt caagtcttac cgacgctaga attttttttt       480
     ttttttttat taaattattt attgttacgt tctataactg ggacttcaag ctccacgcgt       540
     gccgtcgata tgacggcatc gtgcagtggc aatgttttgg cgcgcgggcg gcgggatata       600
     tctcactgta ccgaagtgtg ccaaagtgtg ccaaagtgtg ccaaagtgtg ccaaagtgtg       660
     ccaaagtgtg ccatgctgtg ccataccgtg ccaaactgtg ctatactgtg ccatactttg       720
     tcaaaaaaga gatgtttgtt tccgaaaaac ccatgtgtgt caaagtgtgc caaagtgcag       780
     caaatttccg aatttgaaca ctttggcaca ctttggcaca gtatggcaca ctttggcaca       840
     ctttggcaca ctttggcaca ctttgacaca ctttagcata ctttggcaca ctttggcaca       900
     cccaattatt tccactaggg                                                   920
//
ID   DNA-2-2_NVi repbase;    DNA;    INV; 534 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   26-SEP-2013 (Rel. 18.09, Last updated, Version 2)
XX
DE   non-autonomous DNA transposon - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TSD 2-bp;
KW   DNA-2-2_NVi.
XX
NM   DNA-2-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-534
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 761-761 (2009).
XX
DR   [1] (Consensus)
XX
CC   236bp TIR.
XX
SQ   Sequence 534 BP; 168 A; 93 C; 104 G; 169 T; 0 other;
     ccctattgca aaatctcacg tgagatctta cataagatct cacctgagat ctcacgctga        60
     gatctcatgc caaaatctca tctgtaattt tggtccggaa gctgctggat cctcttattt       120
     aataaaaaat aaggttttta atattggaag tcgcctataa ggaggtgctc ctactcagaa       180
     gagttcaaaa aactaggttt cgaagcattt aagatgtttt ttcgattttt aaaaatttct       240
     catctgagat ctcaccttag atgtcacctg agatctcagg tgagatttta gatgagatat       300
     ttttaaaaat cgaaaaaatg tctaaaatgc tttgaaacct agttttttga acttatttgg       360
     ggggaggctc ctccttatag gcgactacca atatttaaaa aactcatttt tgaataaata       420
     agaggatccg gcagcttccg gaccaaaata acagatgaga ttttggcatg agatctcagg       480
     tgagatctca ggtgagatct catgtaagat ctcacgtgag attttgcaat aggg             534
//
ID   DNA-2-3_NVi repbase;    DNA;    INV; 1043 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   non-autonomous DNA transposon - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TSD 2-bp;
KW   DNA-2-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1043
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 939-939 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1043 BP; 356 A; 158 C; 168 G; 361 T; 0 other;
     cactgagaga aaagaaacat tgcagcaaac atatatgtta actgttaaca taggcatgtt        60
     cgatttgagc caataatacg tatgttaata gttaacgtag ctatgttata tgtcaaatag       120
     ctgtatgtta atagttaaca tatggctgcc ctttacgatt tttcatagac tttatgaagt       180
     aatcagataa aaattattag aaaacacact tgtatgaatt ttattaatgc tgagtaactt       240
     tacagtgata taatgtcaaa attcaaaatt ttgtctttca tcggcctttt gggtctaaat       300
     accagatctg atagttctag agataaaata atgagtgtga ttccaactga ttcagcagcc       360
     tctggcattt ccaaaaaggt atatatcaac tagtttatca ctattagttc aaaagttatt       420
     ggaaaaattc aaatctgaaa aatgaatgat tacgatatga tgtttaacac actactgaat       480
     ttttccaata acttttgaac taatagtgat aaactagttg atatatacct ttttggaaat       540
     gccagaggct gctgaatcag ttggaatcac acttattatt ttatctctag aactatcaga       600
     tctggtattt agacccaaaa ggccgatgaa agacaaaatt ttgaattttg acattatatc       660
     attccaaagg cactttgcat gcttccttag gtatattcag ttgctttcgt tctattatta       720
     atgatttatt gattattcat gataaataaa ccctcaagaa tattttttgt atgaaagagg       780
     atgacggatt ttgaggttag gcggtacgag agaaacgcca tctgcacgca acactacgca       840
     cgatagccat gaaattcata tgttaactat taacatacag atatttcccg caatattttg       900
     tatgtatact atagaaatct atagtataca tacaaactgt ttttgtttcg tatagaatat       960
     ttgtaagatg tacacgaata tattagcaat cattgctcct aacgtgtgta catgtttacg      1020
     gcaatgatat ctttctctca gtg                                              1043
//
ID   DNA-20_BTa  repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-20_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-257
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 930-930 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~82% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 257 BP; 73 A; 55 C; 42 G; 86 T; 1 other;
     gtgaccggat ctgtgaaaag ggaccttatc ttccgggaga aaattttcct taactttttg        60
     caaamactta aaccacgttt ttctacaacc taagaatttt tgtcttggaa cttcaggact       120
     aatatctcct tcaatttttg agattttagg gtcaaacttg cgccaaaatt tccagatttt       180
     cttcctccat gcatttgcaa aaagttaagg aaaattttct cccggaagat aaggtccctt       240
     ttcacagatc cggtcac                                                      257
//
ID   DNA-21_BTa  repbase;    DNA;    INV; 514 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-21_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-514
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 931-931 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~80% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 514 BP; 162 A; 96 C; 95 G; 161 T; 0 other;
     gggtcgtatt catagtcgtt ccttaaacag ctcctttcct taggaggccc catttggttt        60
     acattgtgat taagggaggt ttaaggaagc cctcaaaata gcatcataaa aaggacaatt       120
     tttgccaacc tcgagtaaaa ttcagcagta taactttgga aatggatcct tgcaagggat       180
     tacaatgatt tgccactgca aaaagtacaa aatacggaag aaaaaattct atgattttga       240
     caaactttaa ggtaggtgcg aacctacctt aaaatttaca aaactcgcaa tatattttct       300
     ttcgtatttt gtattttttg tagtggtaaa tcattgtaat cccttgcaag gacccatttc       360
     caaagttata ctgctgaatt ttactcgagg ttggcaaaaa ttgtcctttt tatgatgcta       420
     ttttgagggc ttccttaaac ctcccttaat cacaatgtaa accaaatggg gcctcctaag       480
     gaaagagctg tttaaggaac gactatgacg accc                                   514
//
ID   DNA-22_BTa  repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   23-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-22_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-420
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 932-932 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~74% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 420 BP; 103 A; 79 C; 97 G; 141 T; 0 other;
     tgtgaccgtc cacgggaaaa gggaccttag tccacggagg caaaatttca gtagagcgat        60
     ttttgtcgag ttgggtcgaa aaatcggatt ttgagatttc gacggaaaac tctctctggt       120
     gtcctgaaga ataagttgcg agcggtttag ttcatttttg tgccaataga gggcgtaaag       180
     ttgcattata atccggcaat tttgtgctcc tgaacatggc agattagaat tttaaatagc       240
     tttttctcga aactacgttt tttgaactgc aaacttcaaa ccgccataac tccggtttgg       300
     tttgacattt ttgggcgttt tttgtcccaa aatgttgtga aacgctctct ctatgctctg       360
     gtatcaataa ctcaattttg agtttttgtg gactgaggtc cctttccctt tggggtcaca       420
//
ID   DNA-23_BTa  repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   23-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-23_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-249
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 933-933 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~79% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 249 BP; 80 A; 45 C; 42 G; 82 T; 0 other;
     ggacggattt aaccagaatc agcctaactg catttcacgt tgcctaattt cctctcatgt        60
     tttatttttt acagagaact aaacaacata acgccttgaa actttctgtg aattttccct       120
     agattatgaa gaatatactc acaaaatttc aagtcagagt gttgcttagt tttctgttaa       180
     aaaaataaaa catgagagga aattaggcaa cgtctgatgt agttaggctg attctggtta       240
     aatccgtcc                                                               249
//
ID   DNA-24_BTa  repbase;    DNA;    INV; 85 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   23-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-24_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-85
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 934-934 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 85 BP; 24 A; 11 C; 22 G; 28 T; 0 other;
     gttgccagat tgtgcgataa aatgtggata ttttacatgg gtttaaatgg ggaaaagtgc        60
     tgatttttca gcactatctg gcaac                                              85
//
ID   DNA-25_BTa  repbase;    DNA;    INV; 605 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   24-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-25_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-605
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 935-935 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 605 BP; 161 A; 111 C; 132 G; 200 T; 1 other;
     tgggtcacta aaccttgttt attttattta atattctgaa agtacaatgt gagtagataa        60
     cgtggtgatt tttccgcatt tttatggagc cgaaatcgcg gagaaacccg cttttgaaaa       120
     gtctaaaaac tgcaagacat ttcaaacgca cccgaatggc gggaaactga cggtgttgac       180
     gcactgcggt agtcaaatcg caatcttctc tcattttcct ctgatgtttg ttaaaataaa       240
     acgtgtttca atgtggaatt gttgcttgtt tactacagct aacatatgaa tgagattcaa       300
     gtcttgaatt ctaaagatat aatttcgact ttagtattgt tttcatatac gaggagtaga       360
     tagacatttg acggaagtcg tggaaacccg tgcccgcttc tgattggtgc cggatgacat       420
     cattcggckc ggcgcgaaac cggggcgttt taaatttgcg tataagttga gcgatttgaa       480
     ctgcgcattt ctcggttatt gagttacttg ttcgcgtttt taatgtgcgc atcgtgttct       540
     acgcgtcatt ttccttcaga aaactatatt cgcaagtcaa aattcgttca tggtttagtg       600
     accca                                                                   605
//
ID   DNA-26_BTa  repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   24-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-26_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-331
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 936-936 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 331 BP; 108 A; 58 C; 59 G; 106 T; 0 other;
     gggccactag acaaggtctg aagtagaaga aaacgtcaca tgttttctct tcaaaatctt        60
     acatagaaaa caattcacac aacgggaagt tcggaaatca actcctgaac gagatattaa       120
     caagtctttt taacacagat caaatggaag ttagattata caaatgacgt catttgtatt       180
     tttgccattt aaccaatgtt aatagaaaac acttatatct tgttcaggag ttgattttca       240
     gacttcccgt tgtgtgattc gttttccttg tgaaattttg aagagaaaac atgtagcgtt       300
     gtgctttaat tcataccttg tctagaggcc c                                      331
//
ID   DNA-2B_BTa  repbase;    DNA;    INV; 4556 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4556
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 631-631 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are unknown. It is
CC   probably a Helitron.
XX
SQ   Sequence 4556 BP; 1365 A; 932 C; 846 G; 1413 T; 0 other;
     tcaagagtgg cggtagccac ccccggtcga ggaaaatgac gtcctactaa agtcccgata        60
     acaaacgggt ggccgacact cttagtcaca ggcaactccc ttaacttgaa aattgattcg       120
     gttgccattc gactgcagcc caaacgacgg cacggattcc tacgatcttg gtgtctacgg       180
     acgcatctca attaggacta caaagtggaa gagtttcaat aagatccatt gagttttcaa       240
     aaagttataa gcacttaatg acccaaaaca aggaaaattt tactttttac tttgccggga       300
     aatttgaatt tcaagaatcc agggtactga gaaagtcact caaactccgc gataacggta       360
     aaccttagac ccataaaagt gggtacctaa agaatcgtca tgttaccgtg tccacgggtt       420
     tttacagttt tgtaacattc ctagtgatct taaagagaaa ttacggaaaa tacgactaaa       480
     ctgcccgtca tgaccatctt taacaacaga tttctcgctt acccggccgc ggattgtaat       540
     ggagcctata taaagggcac tccgtgaaga tgtgaggatt tcattttgcc acataaaaaa       600
     gcgctttatc tcacggataa tccagcatcc gcttacatcc ttcaaaattt tagctataat       660
     ttttgaattt agaaaaaaac cagtaatata atggttcaac gccattggtt cattctgttc       720
     aggttcgtcc gagtttcggg aacgaaattc ctgtcgtcgt tatcaacctc catctactgt       780
     atttatttgt gaataatgaa cagatgtaat ttaaaagttc aattcatttt agatcctaac       840
     taatattaca cacttatatt attacgccca cttttatccc gatacgctac ttcattggtt       900
     tcttaaaaat ctcaagtgat ttctggtcgg tcgttgccaa cctctttaac tagttgtgaa       960
     tagatttacc taatttggat aagagtttaa ttctttgtag atgctaacta ctatatttac      1020
     atactcatat tattacgtct cacgtgttct actggagccc gatatactat taccttagtt      1080
     tctcttaaaa ttttcaagtg gtatctttat tttattgaac gaaaatgtga caaattttta      1140
     agtgaggtta tgtcgtcatg tttatgtcag tacctgacct aagcgataga tgtaattcag      1200
     gtaaattacg ttaacgaaat tacaccgaaa ttgtgccaaa ctctccaaag gaagcagcat      1260
     ttacatcaca gaatgtattc tcacgactaa agtctaaaaa ttactggaat atgagcctcg      1320
     gccttcacat gcgactgtca ctgaacttcg accaaaattt attcgctcta tatcttgcca      1380
     tcaacctatg tgctctggag tgattatgct tctctgaagt gtatgttatt tacattaaga      1440
     acatgtttcc ttcatgattt atcttggaat cctcctatct cttctaccgt tcttgttacg      1500
     cgtggcttgc gaacctgagt atgtgaggca caattccatc ccttttcgga acagttcaat      1560
     cataggtcaa cttaatgtca cataatcaaa ggtctttgac tgtgagcatt tgctcaaatt      1620
     ggtttcttct gagtctcttt gattttgcgt caggagttgt tagaaacttc attttgccca      1680
     acaatgtata acaaggtctt taatgaaagg tatgtacccg ttttattctc ataatttcat      1740
     aagttgatga taaaaataca atgaaggctt cattttcttg catcgattac tgtgtgaaat      1800
     gggtgcgtcc attcttcctc tgttcaaaag cgtaacagaa taaattgctt atctgttacg      1860
     aggactacag tagtaagatt cgtaggtacg tgttcctgcc tagttccatt ggaataagtg      1920
     tgatcgtgtt aatcaaggct aaatacaatt agaccccatg gtatcaatgt aatcataaat      1980
     gcctctccac tcttaccaac taggtgcggc atatcctccg atcaagagat ggagattgcc      2040
     gtctcagtag gtacgagggt gagcctacga acccaggtat ggtgaccgta agtaccgctt      2100
     tggcctctca cattcagatg agcctttttt tctaatgaac tcatgccaat acttagatct      2160
     ccagacttat ttactacatt aagaacacat aagataataa attaaatagg tcaagtcagt      2220
     tgtcaatctt tataccaagt gcaggtacca acataatttt ttgttattgg tgggacaaaa      2280
     gacactagct gcaacgcagc gattcataga tttaattgtt cccaaccgat ccgtgatttg      2340
     gcgtcaatcc tttggataaa aagatcacga tagttccatt attaataatt aaaaacatca      2400
     tttaatttga caacagttct gtgtgcgttt cccactgtct gaagttcagt aaaaataagg      2460
     actcaattgt ggtggccaca ttctcatgat gcagttacat ctcaaccaat gaacacctgc      2520
     agattcgttt cagaatcagc attggtgcgc tctctcgcgg ctaacgccgg aaccctagtt      2580
     ttcactttca cttttctcca ccaggagcgc tgagtagcac tctgctttcg ttccggttct      2640
     ccgattcgct ctgaaccata gagtacaata gagtcgcaat gtactggagc gccgatgaag      2700
     tcaatccatt aacgggcctt tccgagccgc ttgtgctccg aaaagtgtga acccgacggc      2760
     acttatcatc attgtggctt atagagaaat caagaactac ttgtgttttt tcgacatttt      2820
     taattcaatc atcattaatt tttgcaaatt ttgctgcaaa cgggtagtta aagtcatagt      2880
     gaatccatta atgtatcata ctcttgaata atattccaaa aaggaagtaa attgagactt      2940
     aaaccaagtg tgaaccgaca agcatttctt atcacggcgg cttacgggaa aagcaacgac      3000
     tgcttgtgtt ttttcgacat tttttaagtc aatcgatgtt aatttgtgta aattttgcta      3060
     taaatagatg gtcaaagcca taataaatcc attcatgtat gttactcctg gattttattc      3120
     acatagggat ttaatttctg acttatacaa agtgtgaacc aaaccggcat ttctaacatg      3180
     gtggcttatg gagaaatcaa caacactgct tgtgtttttt cgacgcttcg gttttgctag      3240
     ctcttcgtac agccagacct ttaggtactt attcacccaa aaacgacctg atataaacta      3300
     caaaaaccct caaaaacatt tttcgggcaa aaaatccggt cgaggaaatt gacgtgtcac      3360
     ttccttttaa tcaagtataa gataggcaaa aacctttgat gaattcccaa ggtccactaa      3420
     gactaataat catcaaaaag ttcaaaaaaa aaataaatcc cttgccaaaa ataaataaaa      3480
     aaccgatttt gagataaatc cctcgaatga acttgaaatc acaaaatcgg tcgaggatgt      3540
     caactgaaat ttttccccct ttaattatga gctccgcaac aagcgtgact cgcttgtacc      3600
     ttttcataca cgagccgcac gaattcatct cttcttctct cctctccttc cgtccatgga      3660
     cagaggtcca aaatttttcg gatttactga cgcgaccggc tgcggctcgg tgcgtaaaca      3720
     tgggtggatt atactaagat gacacataag tcagagagaa acacgtacaa cctgtcgact      3780
     taagtggggc tcattccgtg aagggactca actcctccac tataacaatt ccactaataa      3840
     ttttgcgatt cagaaatccc ctcacttgtc cggacctaac gtgtctgtcg aaatgtcatc      3900
     caatggtaca gatgtatttt atacttaact gatagagtat aagaacaatt attacttaca      3960
     acctacctac cgtccaaagc aaatggtaag ctcccttaaa aaaaaaatcc atgtttcaga      4020
     tgaatcatgt ttcgaaaaag tctaacatgt ggttatggaa aaatgggtcg actggtgaaa      4080
     ttgcaaccga cttgaagccg acatcaggga tgataagaag gcaccgattc actgagagca      4140
     tcgagccgca gccggtcgcg tcagtaaatc cgaaaaattt tggacctctg tccatggacg      4200
     gaaggagagg agagaagaag agatgaattc gtgcggctcg tgtatgaaaa ggtacaagcg      4260
     agtcacgctt gttgcggagc tcataattaa agggggaaaa atttcagttg acatcctcga      4320
     ccgattttgt gatttcaagt tcattcgagg gatttatctc aaaatcggtt ttttatttat      4380
     ttttggcaag ggatttattt ttttttttaa ctttttgatg attattagtc ttagtggacc      4440
     ttgggaattc atcaaaggtt tttgcctatc ttatacttga ttaaaaggaa gtgacacgtc      4500
     aatttcctcg accggatttt ttgcccgaaa aatgtttttg agggtttttg tagttt          4556
//
ID   DNA-2B_PPo  repbase;    DNA;    INV; 1227 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_PPo;
KW   DNA-2B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1227
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2724-2724 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Both termini are uncertain.
XX
SQ   Sequence 1227 BP; 447 A; 168 C; 180 G; 432 T; 0 other;
     tttattataa aataaacagt attacaaaat taaataaaca tataaatatg ttttagtgac        60
     acccactggc aattaattaa atatattaat tatattgcga cgcggttttg gggatctatc       120
     aatagacagc gttaatgatt tatgtgaaaa acatttcaag tgaggtatca actatgccta       180
     ctctatatat aatttttgaa tctctttgat tttataccac ccatccctaa caaattttca       240
     agtgaattgc aaactttaca tttatttaca aatcaattta ggtacttaat ttagttatgt       300
     atgttaaaat attacgatct ttgtcgagtt aatttcgaga aagcgatggt tccagttgga       360
     taaaacatat tacagctagg ggtttggtcg cttaaattcg aaacgaatat gtaataaaac       420
     aactgttagc aaaatcattt ctaagtcaat gtatttatta ttttaaacac atattgaatt       480
     cgtgttttta atttaataag atatgaaaag tacacaaaat acaccgcaat gacgtcacgc       540
     taccaccatg acattcattg gttacgtaag gaatataaga cagagtccgt gataaatatc       600
     caaataacaa tgagaggatc attatgaggg gttcaaaaaa cacaccaagt tagaagaaaa       660
     gaggaaaata cgatctgaaa agttgtgaca tttcggtttc attttaattc attttttttt       720
     aattttgaca tgtgacatta tcatgtcaac gcagtaaaga gtatggtagc tatttatagt       780
     ttgtctaaat aaaatggatt agtttgacaa ttcatttgaa atttagtagg gatgggttgt       840
     gtataatcag tcatgaatct tatcgatttt cgatttttat ccttaaagaa gttggaatcg       900
     acagattcat agttataact taggaataaa aaaactgttt tctcaaatta ataatgacct       960
     acagaaccat tacaaataat gagagaaaaa ataatcgaat tggatttcgc tattatttct      1020
     gtcatcgcta aattctctac actataatca atactagaat tgtccactaa attagttaaa      1080
     aagaaaataa taattttagt taagttcgat aaattttatt taaaccgaat atcgatagtt      1140
     cataattgtt cgctatgcgt ttttctttcg tcactacgat acctgtctat agtcggtatt      1200
     tcattcatac aaatttaatt cgatact                                          1227
//
ID   DNA-2B_RPr  repbase;    DNA;    INV; 944 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 20.10, Created)
DT   20-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-944
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3215-3215 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 944 BP; 292 A; 172 C; 175 G; 305 T; 0 other;
     cagggtgttc attttaagac ggctcaaatg catttcatgc ttaaacggtt gatctgagca        60
     aaaaatggta gaggaaaaat ttgttgcccg tcacctctag tttcagaata tgtgacttga       120
     ttttagattc ctgcccgcat acgcggctgc tctggctcgc aagccaggtt agccaggagg       180
     ttatcaactg ctctctgtgc ctgaggaggc acctttgaag gcacagtaca tgcttcacaa       240
     gttgagtaaa gtgcattatt tgataaatta aggaataagt ttgatccttt acatgaaaga       300
     tattgatcac ttaaatatgt ggcaggaggt ttccaatttt tttggtaatt aaacgcaact       360
     ctcccaaaat taccaaataa ttattaaacc ttcttgtttg taacagatgt aaaattaatt       420
     tttagccatt ttgtgtatgc ttgagaacat ctaaagctct taacatttga tttttcttag       480
     aaaaatcact cggaaaacga cttatttccc gatattaaga aaaatactag ctttactgcc       540
     ttggcaatat ttttagtaga aaggggatga aaaaatacat aaaaatgacc tatcgcgtgc       600
     tcttctttct ctttgataac aagttaaaaa attgaaatat gattaataaa taccagattt       660
     tgaaatggcc tagcaccttt aattttgaag atatcgaatt gcggtttccg gtttctttca       720
     taacttttta tactctttaa aactgtgtat atgaaaatgg gggtcaactg cgaaccctca       780
     cttttggtcg cgcgtcagcc gcgtatgcgg gcaggaatct aaaatcaagt cacatattct       840
     gaaactagag gtgacgggca acaaattttt cctctaccat tttttgctca gatcaaccgt       900
     ttaagcatga aatgcatttg agccgtctta aaatgaacac cctg                        944
//
ID   DNA-2C_RPr  repbase;    DNA;    INV; 1533 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 20.10, Created)
DT   20-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2C_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1533
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3216-3216 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1533 BP; 493 A; 265 C; 271 G; 504 T; 0 other;
     cagggtgttc attttaagac ggctcaaatg catttcatgc ttaaacggtt gatctgagcg        60
     aaaaatggta gaggaaaaat ttgttgcccg tcacctctag tttcagaata tgtgacttga       120
     ttttagattc ctgcccgcat acgcggctga cgcgcgacca aaagtgaggg tttgcagttg       180
     acccccattt tcatatacac agttttaaag agtataaaaa gttatgaaag aaaccggaaa       240
     ccgcaattcg atatcttcaa aattaaaggt gctaggccat ttcaaaatct ggtattttta       300
     atcatatttc aattttttta acttgttatc aaagagaaag aagagcacgc gataggtcat       360
     ttttatgtat tttttcatcc cctttctact aaaaatattg ccaaggcagt aaagctagta       420
     tttttcttaa tatcgggaaa taagtcgttt tccgagtgat ttttctaaga aaaatcaaat       480
     gttaagagct ttagatgttc tcaaacatac acaaaatggc taaaaaataa ttttacatct       540
     gttacaaaca agaaggttta ataattattt ggtaattttg ggagagttgc gtttaattac       600
     caaaaaaatt ggaaacctcc tgccacatat ttgaggatca atatctttca tgtaaaggat       660
     caaatcttat tccttaattt atcaaataat gcacttttgc agcttttgca gcatgagctg       720
     tgtcttgaaa ggtgcctcct cggctcgcaa gccaggttag ccaggaggtt atcaactgct       780
     ctctgtatct gaggaggcac ctttgaaggc acagtacatg cttcacaagt tgagtaaagt       840
     gcattatttg gtaaattaag gaataagttt gatcctttac atgaaagata ttgatcactt       900
     aaatatgtgg caggaggttt ccactttttt tggtaattaa acgcaactct cccaaaatta       960
     ccaaataatt attaaacctt cttgtttgta acagatgtaa aattaatttt tagccatttt      1020
     gtgtatgctt gagaacatct aaagctctta acatttgatt tttcttagaa aaatcactcg      1080
     gaaaacgact tatttcccga tattaagaaa aatactagct ttactgcctt ggcaatattt      1140
     tcagtagaaa ggggatgaaa aaatacataa aaatgaccta tcgcgtgctc ttctttctct      1200
     ttgataacaa gttaaaaaaa ttgaaatatg attaataaat accagatttt gaaatggcct      1260
     agcaccttta attttgaaaa tatcgaattg cggtttccgg tttctttcat tactttttat      1320
     actctttaaa actgtgtata tgaaaatggg ggtcaactgc gaaccctcac ttttggtcgc      1380
     gcgtcagccg cgtatgcggg caggaatcta aaatcaagtc acatattctg aaactagagg      1440
     tgacgggcaa caaatttttc ctctaccatt ttttgctcag attaaccgtt taagcatgaa      1500
     atgcatttga gccgtcttaa aatgaacacc ctg                                   1533
//
ID   DNA-2N1_PBa repbase;    DNA;    INV; 1194 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   07-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1194
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 589-589 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1194 BP; 422 A; 173 C; 157 G; 442 T; 0 other;
     cccgtatgga aaggaactat tgagaactat tgagaactat tcagatttct atagttacca        60
     ttcaatttct gtagtaactt gagtagtaac tattggcgat tacatgcatg aatagtaatt       120
     attggcgaat agttctgaaa agtaactatt ggcgactacg tgtatgaata gtaattgaat       180
     agctattcat gcatgtaatc gccaatagtt actactcaag ttactacaga aattgaatgg       240
     taactataga aatctgaata gttctcaata gttttcaata gttcctttcc atacgggggt       300
     gtaaggaaaa tgctgttgct ttttaaaaaa acatgtaatt gcatattacg aattgcataa       360
     ttctttttta aaaacaacta tatgttttct atgcactaat ttatttatct tattttatgc       420
     ataaaagtat taagatataa tagcaaagac tgaatagttt atgagatatt ttatatttta       480
     tgttgaaatg tgcaagagta aagtgtaaag ttattatttt tttgacaatt ttatcttaat       540
     acttttatat gcagaataat cggagaaatc atgtattgat ttttttcgaa aattaatttt       600
     accattattt gtctcccttc aaaacgtata tcttttattt caaacgtttt tccgtttttc       660
     ttcaataatt ttcgaaaaat ctcaatccgt catttaaaat aagacatcct gtacatacat       720
     cataacatta ttttaaaaaa tacaataaaa agattactaa tcagggtatc cgcgtactat       780
     ccagagtaac tggcatatca ttcaatacta atatcagatt tccacgattt ttcacgaaaa       840
     tcgcgaatta gtaacttgta gttatttgtt ccaatagaat agcaaactac tcattctaat       900
     agtaaagaat agtaaatcct tataattact attcgctcca atagtaaact atttacgatt       960
     ctaatagtaa tgaatagtaa gtgcctacag ttactattcg ttccaatagt aaactactta      1020
     taattctaat agtaatgaat agtaaatgct tatagtaact attcatccaa tagtaaacta      1080
     ttcatgtttc caatagtaat gtcccataat actacacaaa atttcaatag ttttctgaat      1140
     agttctgaat agttatattt ctcaatagtt ctcaatagtt cctttccata cggg            1194
//
ID   DNA-2_AAe   repbase;    DNA;    INV; 4771 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4771
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1257-1257 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. TIRs are 719 bp long. Terminnal
CC   TTAA can be TSDs.
CC   The region 1017-1300 is an inserted FEILAI_AA (~87% identical to
CC   consensus).
XX
SQ   Sequence 4771 BP; 1528 A; 898 C; 866 G; 1477 T; 2 other;
     ttaaccttca tccagccaac atacttttca catgcaaaaa ctacactaaa atgtgcataa        60
     cttttttgat tctcgatgga ttttgttgaa attttcagaa cttcccgaaa aactcttcta       120
     gtttatggtc caggacactt gggaatatgg tccacgtggt tccggagtta ttccggattg       180
     tcttggggta ccaaaattgg ccacatcgtc cattcaacgg atatctcaaa acccagatga       240
     gctagaaggt tgatgtcttc ggcaaagttg ttcagcaaac taagggctat ccgtcagtaa       300
     caatcttaat tgggaattta tccgctaggt ggcgccagtt acaatttttc ttcaatcttc       360
     tatatctcaa gatcctgatg agctagaagg ttggtgtctt cggtgaagtt gttcagcaga       420
     ccctaagcta tttgtcagta acaatcttat ttgggaattt atccgctagg tggcgctagt       480
     tacaaatttt cttcaatctt ctatatctca agatcctgat gagctagaag gttggtatct       540
     ttggcaaaga tgttcatcag attaagggct atcaggcaat aacaaaatta gttgaggatt       600
     tctccactag gtggcgccag ttacaacttt tcttcaatca tctatatcta aagatcttga       660
     tgagctataa ggttggtgtc ttcggcgaag ttgttcagca gatcaaaagc tatctggcag       720
     caattaatct aattgggaat ttatccgcta agtggcgtta gtaacaaatt atcttcaatt       780
     ttatgtatca aaagttaaca atcagatcaa tgttgggtgg ctccagtttg tcttcgacat       840
     agttgtttac atcgtggcga aaattttaaa ttctcataat tttatgttcg agatttttca       900
     cgtttgattt gtaacttacg cagctcaaca gccacaatac ataagttgga tcatcaattt       960
     gttttatatg ctttttttca ttcaaagcct tatattttat ttacgagatt ttttggtgga      1020
     gccttccttc accgagtggt tagagtccgc ggctataaag caaagccatt ctgaagacat      1080
     ctgggttcga ttcccgtaga cccaggatct tttcgtaaga gaaatttcct tgacttctct      1140
     gggcatagag tatcatcgta cctgccattc gatgtacaaa tactaaaaat ggcaactttg      1200
     gcaatgaaag ctctcagtta ataactgtgg aagttctcat tgaacattaa gctgagaagc      1260
     aggttctgtc ctagtgagga cgtaatgcca agaaaaataa cgagctatgg gctagttcat      1320
     ctcgggacca acggctttac ttcccttcag aaggaagtcg tcactaaaat ttgtaatgat      1380
     tatctcttag atgggtcgta tcccaagtcc taagcgtatg ttttaacgac tataccgagt      1440
     ccatttccac atacacagaa agaaaaatcc gtgtaaattt cagcgtaaaa tcgtgcacat      1500
     aaagggaatg ccagatatgt cgcaaatcta cacgtcacat cgtgtaaaat tacatcaaca      1560
     tcatgtaagt ttccgctaaa catcgtgtaa tctagcatgg actctaaccg attacgcgtc      1620
     aattcgcata aatttacacg atgttgatat aattttacac gatgtgtcat gtaaatttgc      1680
     gacatatctg gcattccctt tatgtgcatg atttttcgct gaaatttaca tggatttttc      1740
     tttctgtgta gagtcctaat tcctagtttt tctgctagaa ttataacgaa cctttctaat      1800
     gtaaacaata acattgggtt ttgacagaca ctcaatgtgt ttcatgattg aatattttcg      1860
     acggcatgag cgtgagcaag tgattttgca tccaaaaatc attcgtgaga atttcgaagc      1920
     atatctcaaa agatttggct tttgtgggag aacctcatgg ttgagatttg agtgtcaatg      1980
     taccaacact ggatgttcaa tacatcaagg gcaatctgaa atggaaaact gaaccaatat      2040
     tcattcgcta tatggtgcta gtaacctctc caatattctg aatttggtga gctggtaatg      2100
     caattgattc aaattttatt cattagatat cactagtgat attttcatag aacttatcta      2160
     atttaacaac atgataagca ggaaggttag tttttcgaca aataatattg gatggctgaa      2220
     atctacctaa tagggatcaa gttggtttga gttttagtgg cgctgccgta tatttttgag      2280
     gaagaatttt attccaagat cctcgtacgc taaaatatcg gtcttttagg atttttttca      2340
     agcaacaaaa atcttcctta aaacaatcca acggaaatgt tatagacaac ggtttaaatg      2400
     ctcaacttga tgctcaccgc taaggtttaa agttagagca gtctgagtac aagtaaatgc      2460
     ttaagtaata acaaataatg tcactgataa caaaacttgt tgattttttt tttgagtttt      2520
     gagttattaa aaactccgtg agttgatgtt ctttaactcg atatcgaaaa cattaattta      2580
     ctgggattgt gtgaaaagtt atttccatga ataatcaaaa ttgaagggga ttcctgtacc      2640
     gaaaaaatcg atactcaacg cgtaatgctt atatatatat gcacataaat caaaaagcta      2700
     tatggaatma ttttgtatgg caaaattggc cagataaact atacacttca cgatattaaa      2760
     aatatattca gagaaatatt tttagtaccg gttgtacata atggagaaaa acaaaaatcc      2820
     ccacaaacgt ctttttcaaa caaacgtttt gatattcggg aaatttctag tgaaatatct      2880
     ttctcaataa aaattaaacg attttaatta ttttgctcaa ctatagggat aatcgtagcc      2940
     gatagtatat tcttaaaata ttaggaattt tatcaggatt aaaggatagc aaaaatccta      3000
     ccatcgcagt ctagaaatat atactgtaga caacaacctt ccagcggatg aattcaatca      3060
     aatttttcac cgccagatat aaagtgcatg ttcgattttg gcaacatgcc aaaaaacctt      3120
     tatgatgccc aaatcaaacc gtgcaaaata aaacggttgt ttcaattgaa acttctatca      3180
     acgtgataat gaccacgaat taaattgaac acggtaagtt tcaagacggc tcacagaaat      3240
     ttcgagatta gcacgattgt tgactgaccc atgatccatt gttttgcata tgtattcccg      3300
     tgttgccaaa atcaaaccat gccaaaataa aaaaaaaaac tttgccgaac atataaactt      3360
     tctcaataca tagaaaagaa atactgttat tggcgccacc tagcagatga attatcatta      3420
     atatttttta ccgctagcct tctagctctt cacgatctca atatatagca gattaaaaca      3480
     ttattgctag caacacctag tggatgaatt ctcaaccgga tgttgcactg ctaaatagac      3540
     cttgatctgt tgaacaaatt tacggaagac accttccttc tagcttatcg gaatctcgag      3600
     acatataatg gggattaatt tttaataagg tttgcaactg cccaaaaatc cttgatctgc      3660
     tgaacaacta tgtcgaaaac accaaacctc tagcttatca atatctcgtg atataggaga      3720
     ttgaagaaaa tttgttacta gcgcaaacta gcgaataatt tcccaatcac taccagatag      3780
     ctcttggtct actaaacaac tttgccgaag acaccaacct tctagcccac caggatcttg      3840
     agatatagaa gattgaagaa aatttgtaac tagcgccacc tagcggataa attcccaatt      3900
     aagattgtta ctgacggata actcttggtc tgctgaacaa ctttgccgaa gactccaacc      3960
     ttctagctcw ccaggatctt gagatataga agatcgaaga aaatttgtaa ctagcgccac      4020
     ctagcggaga aaatctaaac taattttgtt attgccagat agctcttagt ctgctgaaca      4080
     cctttgccga agacaccaac cttcaggctc atcaggatct tgagataaag aagattgaag      4140
     aaaaattgta actggcgcca cctagcggag aaattcttaa ctgattttgt tattgccaga      4200
     tagcccttag tctgatgaac aactttgccg aagacaccaa ccttctagct catcagtatc      4260
     ttgagatata gaagattgaa gaaaaattgt aactggcgcc acctatcgga taaattctca      4320
     actaagattg ttactgccag atagcccagg gtctgctgaa caacttcgcc gaagacacca      4380
     accttctagc tcatcaggat cttgagatat agaagattga agaaaatttg taactagcgc      4440
     cacctagcgg ataaattccc aattaagatt gttactgacg gatagccctt agtttgctga      4500
     acaactttgc cgaagacatc aaccttctag ttcatctggg ttttgagata tccgttgaat      4560
     ggacgatgtg gccaattttg gtaccccaag acaatccgga ataactccgg aaccacgtgg      4620
     accatattcc caagtgtcct ggaccataaa ctagaagagt ttttcgggaa gttctgaaaa      4680
     tttcaacaaa atccatcgag aaacaaaaaa gttatgcaca ttttagtgta ttttttgcat      4740
     gtgaaaagta tgttggctgg atgaaggtta a                                     4771
//
ID   DNA-2_ACe   repbase;    DNA;    INV; 114 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposons from Atta cephalotes, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-114
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 505-505 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 114 BP; 34 A; 25 C; 24 G; 31 T; 0 other;
     cccagtgaga aatgataatg gaatcgacat cgaatcgatg tcgattcgac gtcgaaatca        60
     tcaaatcgac gtcgaatcga ttcgacatcg atttcattgt catttctcac tggg             114
//
ID   DNA-2_AEc   repbase;    DNA;    INV; 953 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-953
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 539-539 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to consensus.
XX
SQ   Sequence 953 BP; 333 A; 145 C; 143 G; 332 T; 0 other;
     cactgtgtga caaatttaaa ctttttttta gaccacaaac tagacaagat gattcttata        60
     gattttttgt cactgaaaac gaatccgcaa acgaaattgc tgtatcacgt cacatatttg       120
     agaaaattgg acttaaagtt gccaaaaatg gcacttttgg gtacttttga gctaaaatag       180
     ctcaaaaatg tgacgtgata gagcaatttt atttacggat ttgtttccag caatctaaaa       240
     tctataaaat tcacgtattg tattaactgc tttatgcaaa ttaaaattta taattatagt       300
     taaaagaaag gaaaaatggt ctgcttacgc aatttaaata ctcacctgca cataacgatt       360
     tctgggatcg ccgattatga acgtatggtc aaaattgtca aatataattt gtttgaacaa       420
     tgattgttta aacaatatat gaaaaatttg attttaataa aatctaatag catcattgaa       480
     ttctacgaga aaaatacata taaatactgc attatttttc cgccatccta tttgtgaaac       540
     aatgattgtt tatatttgac atattacata ttatatttga caattttgac catagattca       600
     taatcgacga atcgtgcagg tgattataag cataagcgga ccattatcat ccttctttct       660
     tttaatccta taactgtaaa ttttgcataa agcagttaat acaatacgtg agttttatag       720
     attttagatc gctgaaaaca aatccgtaaa tgaaattgtt ctatcacgtc acatttttga       780
     gctattttgg ctcaaaagta cccaaaaatg accatttttg gcatctttaa gtccaatttt       840
     ctctgaaatg tgacgtgata gagcaatttc attagcggat tcgttttcag cgacaaaaaa       900
     tctataagaa tcattttgtc tggattgtgg tctaaaattc gtgtcacaca gtg              953
//
ID   DNA-2_AG    repbase;    DNA;    INV; 878 BP.
XX
AC   .
XX
DT   03-SEP-2010 (Rel. 15.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-878
RA   Jurka J.;
RT   "Non-autonomous DNA transposons from mosquito.";
RL   Repbase Reports 10(9), 1427-1427 (2010).
XX
DR   [1] (Consensus)
XX
CC   2bp tsd. >94% identical to consensus.
XX
SQ   Sequence 878 BP; 229 A; 193 C; 232 G; 224 T; 0 other;
     gcatccacgc aaacaatgag accccaaatt ttgagtgatt caggccgagg ggtatgagga        60
     agcttgagga agcaaggaga aacgcgctgc gatgagagtt cgcattctgt tttacacgcg       120
     cgcttcacta acaccaatac aaataccgtg ctttgacgag ccgtctgtga atgtgtgtgt       180
     gtcttctttc agcgagctca acaacttgga gctgctcgtc acatcgtgtt gtctcgctta       240
     cactacagca tcgaaccatc gctccgtatg tccccccctc ctacgcgtac aaaaccacca       300
     gtacagcgcg acgctttgcc ggagatggtt gtgcgcgttt tgttctaagt cccgcgcgca       360
     gtgtttgtgc gttgatgcgc atttcgttat aagtctcgtg cgccggtgtg ttttggtgaa       420
     gtgtgcagtg aataaacagt gtgcacagac gcacatgcag tgcgtggatc gacaggtaag       480
     aatttgctga acagagtcaa cgcagattgt cgacaagttt cccgcagcct ggctcgaccc       540
     ggtacttcag tatgacgcca ttcgtgagta tgaggattct aaatgtgtac tttaggtgta       600
     ctttatgttt caataaagtg tttaatgtaa taaaaaatga ccgtgtttgt gtttggtttt       660
     agaataagtg catgaaagaa aacgagaaac gaaagaaaca actatcttta atgtgttggt       720
     agcatggctc gaaagaacac aacacattga gaactgcaga gcgcaccgtg cgttacgggt       780
     ggggggggga gggctcgcgc gagggtaact cattgtcgaa gagacactgt tgagcgcact       840
     caaatcactc aaaaaataca ctcattttgc cggacggg                               878
//
ID   DNA-2_BTa   repbase;    DNA;    INV; 4479 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4479
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 625-625 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are unknown. It is
CC   probably a Helitron.
XX
SQ   Sequence 4479 BP; 1358 A; 928 C; 832 G; 1361 T; 0 other;
     tcaagagtgg cggtagccac ccccggtcga ggaaaatgac gtcctactaa agtcccgata        60
     acaaacgggt ggccgacact cttagtcaca ggcaactccc ttaatctgaa aattgattcg       120
     gttggaactc gactgcagcc caaacgacgg cacggattcc tacgatcttg gtgtctacgg       180
     acgcatctca attaggacta caaagtggaa gagtttcatt aagatccatt gagttttcaa       240
     aaagttataa gcacttaatg acccaaaacg aggaaaattt tacttttcac tttgccggga       300
     aatttgaatt tcaagaatcc agggtcctga gaaagtcact caaactccgc gataacggta       360
     aaccttagac ccataaaagt gggtacctaa agaatcgcca tgttaccgtg tccacgggtt       420
     tttacagttt tttaacattc ctagtgttct aaaagagaaa ttacggaaaa tacgactaaa       480
     ccgacgaaac ctgcccgtca tgaccatctt tgacaacaga tttctcgctt acacggccgc       540
     agatcgtaat ggagcctata taaagggcac tccttgaaga tatgaggatt tcatttcgcc       600
     acataaaata gggctttatt gcacggataa tccagcatct gctcacatcg ttcaaaattt       660
     tagctataat atttgaattt agaaaaaaaa ccagtaatat ggtggttcaa tgccattggt       720
     tcattctgtt caggtccgtc cgagtttcgg gaacgaaacg tcgtcgatta taccaacctc       780
     cagctactgt atttatttgt gaataatgaa cagatttaat ttaaaagttc aattcatttt       840
     agatcctaac taatattaca cacttatatt attacgccca cttttatccc gatacactac       900
     ttcattggtt tcttaaaaat ctcaagtgat ttctggtcgg tcgttaccaa cctctttaac       960
     tagttgtgaa tagatttacc taatttggat aagagtttaa ttctttgtag atgctaacta      1020
     ctatatttac atactcatat tattacgtct cacgtgttct actggagccc gatataccat      1080
     tagtttctct taaaatgttc aagtgatatc tttattttat tgaacgatat gtgacaaaat      1140
     tttaagtgag gttatgtcgt catgtttatg tcagtacctg accgaagcga tagacgtaat      1200
     tccggtaaat tacgtcaaag aaattacacc gaaattgtgc caaactctcc aaaggaagca      1260
     gcatttacat cacagaatgt attctcacta ctaaagtcta aaaattactg gaatatgagc      1320
     ctcggtcttc acatgcgact gtcactgaac ttcgaccaaa atttattcgc tctatatctt      1380
     gccatcaacc tatgtgctct ggagtgatta tgcttctctg aagtgtatgt tatttacatt      1440
     aagaacatgt ttccttcatg atttatcttg gaatcctcct atctcttcta ccgttcttgt      1500
     tacgcgtggc ttgcgtacct gagtatgtga ggcacaattc catccctttt cggaacagtt      1560
     caatcatagg tcaacttaat gtcacataat caaaggtctt tgactgtgag catttgctca      1620
     aattggtttc ttctgagtct ctttgatttt gcgtcaggag ttgttagaaa cttcattttg      1680
     cccaacaatg tataacaagg tctttaatga aaggtatgta cccgttttat tctcataatt      1740
     tcataagttg atgataaaaa tacaatgaag gcttcatttt cttgcataaa ttgctgtgtg      1800
     aaatgggtgc gtccattcct cctctattta aaagagtaac agaatgtatc gctcatctgt      1860
     ttagaggact tcagtattaa gatacgtagg tacgtgttcc tgcctagttc cattggaata      1920
     agtgtgatcg tgttaatcaa ggctaaatac aattagaccc catggtatca atgtaatcat      1980
     aaatgcctct ccactcttac caactaggtg cggcatatcc tccgatcaag agatggagat      2040
     tgccgtctca gtaggtacga gggtgagcct acgaacccag gtatggtgac cgtaagtacc      2100
     gctttggcct ctcacattca gatgagcctt tttctctaat gaactcatgc caatacttag      2160
     atctccagac ttatttactg cattaagaac acataagata ataaatcaaa taggtcaagt      2220
     cagttgtcaa tctttatacc aagtgcaggt accaacataa ttttttgtta ttgggtggac      2280
     aaaagacact agctgcaacg cagcgattca tagattcaat tgttcccaac cgatccgtga      2340
     tttggcgtca atcctttgga taaaaagatc acgatagttc cattattatt aattaaaaac      2400
     atcatttaat ttgacaacag ttctgtgtgc gtttcccact gtctgaagtt cagtaaaaat      2460
     aaggactcaa ttgtggtggc cacattcttc atgatgcagt tacttctcaa ccaatgaaca      2520
     ccagattcgt ttcatactta gagtttcgcc ttgtaggatc aatttttgat tggctcttgc      2580
     atttcggtta aagcgaaaga ctgagtatga accatggaac gaagggtaca acaagaaaca      2640
     aacggaatga gagagggaat gtaagtagga aatggtagga aagcaacaag agcaaaataa      2700
     acaaaacctc gaaaataaga aggcaaattt ttatccagac gaatttctac ttcaatctta      2760
     aaatacattc tcctcaaaac ccttgttctt ttagtgcatt ttcacgatat tcttagtttt      2820
     tgctgctata ctgtgtgcca tcctataaag ccctatctga aagtaaataa attcgcgggc      2880
     aatttttaaa ctttactttg ctgcaattgg tccgagttct caggatctgg gaagttgcaa      2940
     gaatcagaat cagcattggt gcgctctctc gcggctaacg ccgaaaccct agttttcact      3000
     ttcacttttc tccaccagta gcgctctact ttcgttccgg ttctccgatt cgctctgaac      3060
     ttcccaaatc ctaacccaac tccgggagcc accgaatgct tcggttttgc tagctcttcg      3120
     tatagccaga cctttaggta cttattcacc caaaaacgac ctgatataaa ctacaaaaac      3180
     cctcaaaaac atttttcggg caaaaaatcc ggtcgaggaa attgacgtgt cacttccttt      3240
     taatcaagta taagataggc aaaaaccttt gatgaattcc caaggtccac taagactaat      3300
     aatcatcaaa aagttccaaa aacttactcg aaaggaaaaa aataaaatga aaaataaatc      3360
     ccttgccaaa aataaataaa aaaccgattt tgagataaat ccctcgaatg aacttgaaat      3420
     cacaaaatcg gtcgaggatg tcaactgaaa ttttcccccc tttaattatg agctccgcaa      3480
     caagcgtgac tcgcttgtac cttttcatac acgagccgca cgaattcatc tcttcttctc      3540
     tcctctcctt ccgtccatgg acagaggtcc aaaatttttc ggatttactg acgcgaccgg      3600
     ctgcggctcg gtgcgtaaac atgggtggat tactaagatt acacataagt cagagagaaa      3660
     cacgtacaac ctgtcgactt aagtggggct cattccgtga agggactcaa ctcctccact      3720
     ataacaattc cactaataat tttgcgattc agaaatcccc tcacttgtcc ggacctaacg      3780
     tgtctgtcga aatgtcatcc aatggtacag atgtatttta tacttaactg atagagtata      3840
     agaacaatta ttacttacaa cctacctacc gtccaaagca aatggtaagc tcccttaaaa      3900
     aaaaatccat gtttcagatg aatcatgttt cgaaaaagtc taacatgtgg ttatggaaaa      3960
     atgggtcgac tggtgaaact gcaaccgact tgaagccgac atcagggatg ataagaaggc      4020
     accgattcac tgagagcatc gagccgcagc cggtcgcgtc agtaaatccg aaaaattttg      4080
     gacctctgtc catggacgga aggagaggag agaagaagag atgaattcgt gcggctcgtg      4140
     tatgaaaagg tacaagcgag tcacgcttgt tgcggagctc ataattaaag gggggaaaat      4200
     ttcagttgac atcctcgacc gattttgtga tttcaagttc attcgaggga tttatctcaa      4260
     aatcggtttt ttatttattt ttggcaaggg atttattttt cattttattt ttttcctttc      4320
     gagtaagttt ttggaacttt ttgatgatta ttagtcttag tggaccttgg gaattcatca      4380
     aaggtttttg cctatcttat acttgattaa aaggaagtga cacgtcaatt tcctcgaccg      4440
     gattttttgc ccgaaaaatg tttttgaggg tttttgtag                             4479
//
ID   DNA-2_CQ    repbase;    DNA;    INV; 1866 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1866
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 43-43 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. ~790 bp TIRs.
XX
SQ   Sequence 1866 BP; 524 A; 395 C; 416 G; 531 T; 0 other;
     aaaggagaat gggcaaattt gtatgggagc tggtccaagg atgtacacga acgggaccaa        60
     cttttttcga aagatctcgc cgagacatga aaaaaagtct tctggaccaa ctctctaaac       120
     cccggggttc aaaagttaca agttgttgaa gtttgagcat tttgggttaa aatgtacaaa       180
     aaatcgtatt tttgctattt ctaaaatcat tcataaaatc tctgtttcat tatggatttc       240
     gattttcttg acttcattcg acgcgtatca gcaaaaacta tgagttctga tatgtcttag       300
     catgattgaa acatgatttc tcttgttttt atccgtttga accgtttgtg caagaggcat       360
     cccatagaaa caagtcgaaa cttcaaggtt ttgaaaccgg atccgaccca gactgcttca       420
     gtgagtatgg aaggcttcag tgcaatgttg taacaactta ttgggatggt ctgagtcatc       480
     cgagaactcc ttggagttaa gaccggtgag tctaccgccg taacaagcaa gatgtcggcg       540
     gtttttgacc acggatcata cccgcatggc ttcagtgagt atggtagact actatgctga       600
     tgtgttggag tgtcctgggt tctcctagga ctccctggag ttaagatctg tgggtctact       660
     accgtaacaa gcaaaatgtc gaccggtttt gacaacggaa catacccgca tagcttcagt       720
     gagtgtggta gactactttg ctaatgtgtt aggatgtcct gggtcatcca aggactccct       780
     ggagttatga tctgtggagc tacagccgta acaagcaaga ggtcgacggt ttttgacccc       840
     ggaacataca cgcatagctt cagacagtat ggtagactgc tttgttaatg tgttgggatg       900
     tctttggtca tcctaggact ccctggagtt tagatatttg ggtcactgta acaagaaaaa       960
     ggtcgatgat ttttaaccgc gcatcataac cgcaaagatt cagtgagtat ggcagactgt      1020
     attgctgtta tgttgggatg ttctggacca ttccagggag tccttgtaac agccgtagac      1080
     ctacagatca taactccagg gagtccttgg atgacccagg acatcctaac acattagcaa      1140
     agcagtctac cacactcact gaagctatgc gggtatgttc cgttgtcaaa accggtcgac      1200
     attttgcttg ttacggtagt agacccacag atcttaactc cagggagtcc taggagaacc      1260
     caggacactc caacacatca gcatagtagt ctaccatact cactgaagcc atgcgggtat      1320
     gatccgtggt caaaaaccgc cgacatcttg cttgttacgg cggtagactc accggtctta      1380
     actccaagga gttctcggat gactcagacc atcccaataa gttgttacaa cattgcactg      1440
     aagccttcca tactcactga agcagtctgg gtcggatccg gtttcaaaac cttgaagttt      1500
     cgacttgttt ctatgggatg cctcttgcac aaacggttca aacggataaa aacaagagaa      1560
     atcatgtttc aatcatgcta agacatatca gaactcatag tttttgctga tacgcgtcga      1620
     atgaagtcaa gaaaatcgaa atccataatg aaacagagat tttatgaatg attttagaaa      1680
     tagcaaaaat acgatttttt gtacatttta acccaaaatg ctcaaacttc aacaacttgt      1740
     aacttttgaa ccccggggtt tagagagttg gtccagaaga ctttttttca tgtctcggcg      1800
     agatctttcg aaaaaagttg gtcccgttcg tgtacatcct tggaccaaat ttgcccattc      1860
     tccttt                                                                 1866
//
ID   DNA-2_DBp   repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.05, Created)
DT   13-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-2_DBp.
XX
NM   DNA-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-498
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 581-581 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8bp TSD.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 498 BP; 139 A; 104 C; 83 G; 172 T; 0 other;
     caggggtgct caacgcctat acactgagtg cacttttgtt tttgtagatg ctctgtgctt        60
     atggctagtg cgcccataag caccgtgcat atgggcttcg attaccatgc gaaacaaaaa       120
     caattttgct tgtttcttca ttacatctct atccgtcgtc acgcttcgct gaacgcagtg       180
     tattttgttt ttgttttttc ctcgagcaca tgcactggaa cttattcttc tgtctgcttt       240
     ggcttttgat ttatttcgtg ggactaaata ataataatct ggaagctcaa ttaaaattat       300
     caaccactaa aattaatata aatattgaat cttttttaag ccaaatataa aaaaaaaaat       360
     aaataaatat ttaaaactgt ttttttttct ctcagtgcac agctgcgccc caacactaaa       420
     gcgccgctac atatgtacac gttttcttgt gtctgtgtta gtaaacgcac tgccataaga       480
     cgaatttgag cacccctg                                                     498
//
ID   DNA-2_LMi   repbase;    DNA;    INV; 14780 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 19.11, Created)
DT   09-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-14780
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2956-2956 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. Long TIRs. TSDs are undetected.
XX
SQ   Sequence 14780 BP; 4449 A; 2930 C; 3162 G; 4237 T; 2 other;
     gtacagtctt agacaaaaaa attgatcgcc ggccggccga cgcagaggct aagtccgagt        60
     cggtcgcgca gtgtggacaa taaattcgat cgcccctcag aattctaagt ccggcgatat       120
     gcacgatctg gcaacactgt agaatgcggt actgtcagga ggaagtgtta tctccttctc       180
     gaggcagttc tgtactgtat gagcgcgtgg tctcgtggta aaagtcgcgt ttacaagcgt       240
     atatgtaagc agtcgcgaga tcgaatccaa ccaccttcaa tttttttttt ttaaccgcat       300
     atcggctgtc tttgttatca gtgtggaaga acctcaaatg taacagcgaa aactcccaga       360
     aataattaca caaaagggct cgctgctgca tcaaaactga actgtttact ctcgggagta       420
     gtgggcaccg gctacggcga cgcgccagcg gccgcatcgc ggctgccgcc tgcggactcg       480
     gtgacagcgg cgcgccgctg tgagtctatt taccggctgt tatatcctta cttcaagttc       540
     tagtacttat attacagtca cgtattgaat ttttctgact gatatatgaa cataatctaa       600
     acgtcgtaaa gtagaatcgg aaaaaagggt cataggggtg actattacca catttttctt       660
     gaacgtcatc aggccgctca atcaggattc ctactcacga ttgttactag tgacgagtta       720
     tgatgctctc atgctgacat cttaagaaga aattaatgac tgagtactaa aagattttta       780
     tactcagcaa agtgcaacca caacgccagg gtgcgcccat tttttgcaaa caactgagac       840
     accatttagt cgcactgtaa ggacaaacga cctaaaaaat tacatcatgt gttagtacta       900
     caccataata gttcccgttg atttcacaaa caaaacatcg aatagtgtgc tttggaagtc       960
     acccattcct cacctactct ttcgatcata tgtcctcaaa tgtttatctt tcctgcccct      1020
     actcgaataa ccttcgacaa aaattatttc cagacgaaaa tacacgtcga acatcgattg      1080
     gcgtcataat tagcttggaa tcagttcgat tctacaggga cagagttggt aaactaccag      1140
     aacgttgtca gactttccca taatctgaga gaatatagca agtaaccaca agaggtttct      1200
     tgttgttttc gatgtggatt cgtgcaactc ctgtcacgaa aacagctaaa aaattctact      1260
     ccaatgagac csgaaccatt gaccaaagcc acctctccgt ggcagacgac tactttacct      1320
     cagagctagc gaggagctgt gcacgccagc tctttcctac tgccacatac atcactagaa      1380
     catataactc gcaacgtaag agacgagatt agttgcaatt tcgccgtgta aacaattttc      1440
     tggacccaaa agcatgaact aatagccttc tgtcgcctct cgactgagaa accagtcaga      1500
     ttattcaatg gaaattacag gaaacatcaa gtgaatttat gagcatagtt ctgtgccaac      1560
     ccggaagtaa gacctcggta ccagcgttga cagacttaca ctgcgatgtt gccaagcttc      1620
     agtcatacta tcaacaggaa gaataagagc cgaggtgatt gccaagcggg ctcgacagag      1680
     acttagctcg cgcctcgcgc gcctgctggg ggtccgaaca cctgaagtat atgtcaatga      1740
     gccctgctcg catttccgta actagcttta atgagtcgat cgttgtcact aataaaaata      1800
     tacagatgca ccgaccgcta acatattaat aagtgtctca attatttgcg tattctgtct      1860
     taagcgcaat gacaacaaaa gtcattcacc agtgctgttt cacatttctt cgagcatttc      1920
     cattgattat actgaaaaca ttagatgtaa gcaatcagtt ttctttacaa ttatagactc      1980
     agaaaatatc tttcttgata tcgctgtcag tggcacaaac aaacgaagag aggcaaacaa      2040
     acgaagagaa atcaatgcag cattgttttc aagatgtgaa catctctggg aaggcttcgt      2100
     aacatggagt tcaaaataag aagagcttct gttatccgaa cgtagaatta gggacagtaa      2160
     tgtatagatt aatttatctt taagccaaac tgtcatccag tctacaaata ttgcaaaaat      2220
     gaaacgtatc acctgttgat tagagtccca ttatatccgc taacaaaaac gagcagcgga      2280
     tatactgaaa accttttgac tgtgcagaac attcagggca gaaagaaccc aaaatccaaa      2340
     ataactatgg gttaacgaag cagagcatag tgctgacatt gtatgcagca gtcgcacagt      2400
     gttttttttt tttttttttt ttttacccca gccgttttca tatgaataca agctcccaca      2460
     atattcatat cagaaccatc gggccgtaat atgatgacac agttgatcag atggttatag      2520
     aaattgcagt gactgttttt atgctgccaa tggataacgc caaattgtca ctatgtcgga      2580
     atatatcsca gattaagttc tgtctgtgaa agaattgctc aacagttggt gaacagtatc      2640
     gacacccctg cacgtaacac aaacccatca gttgccaatt atacgcagct aaatttctat      2700
     gacttgatct tcctacgaac gatttaattt ctttcacaac agtgttatta cttactgaaa      2760
     gtgttcaaca agcatgagtc tatcacttca tcgttcacgt ccacttcctg ctctcacccc      2820
     tacacccact gtagatgtct aataaattat gacacaaaat acaggtttat acctacatta      2880
     atggggttgt tgatgtcagt tttcccgaca gtattctgcc attgttctga agatgaatac      2940
     tcaacgtaaa tactaatatt cagttggatg aatatctgag gtgtccattt cagttccaca      3000
     aaccaaaaaa tggtggaact aagcgaataa aaagcgtcta tatgccaata aataaaaatg      3060
     aaataacagt taatggaagt ttacaaactc catcggaaga acatgaaaaa tactttcttg      3120
     acctacaaac cactgcaata caaattcttg gatttcacag aaatgcatta cttaggccct      3180
     acttttgttt tggtccatat cacttgcact agagaaggga taaaacatgc gaatatttca      3240
     ttagtattac aggtcctgga actccgtcga ttatcaccga gttgacaatc actttccgta      3300
     tgatattcgt tgtttgagac tgattaaagg ggctttacga catcctttta ttaatcgaat      3360
     tctttaaact tctcggtagt tgcaggaaag tgaattcagg tagacagcgg taatattgaa      3420
     aatttgtgcc ggagcgggac tggaaccctg ctttcttttc cctagtagat ctattctttg      3480
     cggtcgttgg atagtttttg ttctatgttg actggtaaga ttgatctcag tttccctccc      3540
     ttaagaaaag aaacaacaaa aattacagat gcggtcactc ctctggccga gcgagctgga      3600
     agaatcgcct cggctattta tgcaaataat attcaatatg cttcaagttt ttcaaaacat      3660
     gttgtcattg ggtctcatat aggtatgaca gcagtggaga tagctcgaaa cgtatgtatg      3720
     gtgcgagtgc ttttgtgcaa atcacctcac aaaagagatt tcccgtttca agaaagatct      3780
     ttccggtatt catgatttta cacatgaagg aagactcgat aactcacgta agtcatgaac      3840
     tatgatgagt tgaccatcgt gcgacgtttt cactggtcag acaggattca aaagttggga      3900
     gcaggagtat tgcacactca gtttcaaagc gacaaaatcc aaattattgc gtttttgcat      3960
     aaacgtcatt agttcactca ttaagtataa ctataatgct gttattagtg acttattctg      4020
     tagcctttat gttatcttct taaatggctg gtagctctat caaaataggg ttaaaattct      4080
     gatctacaga gggactggaa ccatgaccca aagcagccct cgcttaagaa gcagacacgt      4140
     catctcaggg ctactgacgc gctgctacgt ctcacttcct gcttgttcca ctggtggcta      4200
     cagctaatcg ccaatttccg catggtatga cctccttgca cttgaagtag aaagtaatgc      4260
     gccgatgtcg caccttaaag aaagtaactg agattattca accaaacaga caggtaaata      4320
     ttaagtgaat ttttgtttct gtgtcatccc ggaagtaact cggcggtcac gccggtgcca      4380
     aagagctctc aaacttgcac tgcgctcaaa acagagactt accgagattg caatacgttc      4440
     aacgagctga gcgttgagct cattttccat agagtgcttc tgagtcggtg cacggtgtag      4500
     ttaactgact ccctgatggt acaattacga acgatgtctc caccctgtca caatattcaa      4560
     atgagaattt aggcgtttag tacgacggca cagacaggca gacagatctt gtagagacta      4620
     tccatgcgct actggttctt gacgctcaac tacgtcagtt tgtaggactt attttctgcc      4680
     cgtgaaagag tttctcagca gtgggtgaat aacatccaca ttctggtacc acacacataa      4740
     ccagacaaat aatatgccag ttaatcgcag tgaaatgcaa tatgaccgtg tctttctggc      4800
     agcgactatc ttttccgttt ttctattttc tgttttgcag tagtctgtca cctcgttttg      4860
     gaagtgaaaa acgatttttg cagtccacca caccataatt cacacccact cccttcccgg      4920
     acaatgacaa ttgcaaccgg agatgtttaa taaaatatga cactggatgc aattccatac      4980
     ctaccccatc tgcttctcgt tgtcagcttt ttttgagagg ttattgtact tttattctga      5040
     aaacataaac gcctccattc ttacagctcc accaatcaaa atgcagttca atgactgaca      5100
     aattcgtttc tgacagataa acaatattat agtagtaact ggcaagtgtg gcgaattcta      5160
     taagtcatct gacgattacg aactcaggtg tttcgtagga ttcttgtagt tgatgttgca      5220
     gtcgtaccca tttaaaatac aggaatagta aaagcttccg gctttaaaca tacttttgta      5280
     gtgggattta actgtatggc tacagttgca gcagtacaca ggtggtgata tattgtcgag      5340
     tctgtgaaga ttctctcatt tctttagtac aggctaagtt agaaagcggc tgttagaatt      5400
     attgaaatga agtgatcata tggcattatt gtccgggaca tcccaggcgg gattgttcgg      5460
     ccgcattact atttatttta tctcgaattt aacatactgc aataataata acagaggata      5520
     ggaaacaact cgccgtaaag acgaacgctg agtcgcaggc agacacaaat aaaagacatt      5580
     cacattcaga caatttaaat tttcggccgc agccttcttc agaaagagaa acattcaaac      5640
     acacaatcac tcaggcataa ctcatccaca cacgtcagcc atcgctggca gctcagcaca      5700
     ccctgacata ctacaacaca tttcaagcac gttttgctca tcatcaggcg tttatgcgtt      5760
     ctgatccgtt agttaaagga attgtcttag catcggtttt gttcactctc cgctctagtg      5820
     ggctatttta gtctcagacg gaaagcggtg ctagtgagtg acgcggcgcc cgtcgggggt      5880
     cgaatcccct cgggcatgat gtttgtgctg tctttagtaa agtagttcat aagtagtttg      5940
     taagtttagg gactgatgac ccgcagtccc acaggcttac aaaaagaaaa aagtgaacag      6000
     aaatcgatgc ccgcggtgcc ttccgctagc gtaaagcaat gtctcgtcat gtgtcctgac      6060
     tgaaatcacg gcctatatgg gtagcggata gtgttacttc cttcgttttc gtgtgacatc      6120
     gtgtaataca cattttataa gccacttgat caatcatgat taccggatcc cacacttcat      6180
     cttcatccat ggcaaaacaa cgaattacga aaataggttt tccatgctgt aaattacgag      6240
     agacattgta atttactctt cagatgagct ccttgtagac gaaaacgtaa atttcctatg      6300
     attattgctt attacgcacg aattatattt aactgttttt cagacaataa acgtaatggc      6360
     acttcaacgg tattcattcg tcaggcattg tttgtgaaga ggccaaaaca tgtcaaatac      6420
     ttgtgtctcg gagtgggaag tgtatttatt caaataacta atgggccata catttcgtaa      6480
     cagtggaaat actgcagcaa actgattact taattgtaac atataaactt gtgtaatggc      6540
     tgtcatttca attgcgtagc agacggtaat ttgcctaagc aattatttgc agaattcatt      6600
     atttaccata cgatttaact ttgtctcttc ttattcctat tcagacaggt gtatcgtata      6660
     ttggactgga gcagacaaac gagtgttttc tttcaaatgt taagggttct tggttccatt      6720
     ctctgcttgt tcttgatggt ctgctggtca taagaagaga agacgccacc gacacttacg      6780
     atgtcagcgc tagattaagc ccaccagcac taccacgttg taaagccggt agacagcgtg      6840
     acgccgtgtc gctctctaag catccctact gttctgatat acaaattcta ctgtccaaca      6900
     ttagcgatgg ttacaatata actgctgctg atgctttgcc gcgaaatgtg aaaagcgcct      6960
     tacagattag aatttttgtt tcagcatgcc tcgattcttg agtttgttct aaataaattc      7020
     caggcagttc cacactaacg aacattttca gctatcaaat taaacgcata ggaattatcc      7080
     aagtgtaact gctggatcac tcgactgatt taagtaatat tcaatttttg gatgaatatg      7140
     gctcggaaag cgacgtcaat tttattacag tccatctcct gtctctgaat gattctgaca      7200
     attgcgttaa ttctgtaaag gtgttgtggc aactgtgagt cagtgatgaa tgaacacatg      7260
     cgcagcgata ttcaccgatg aaaggagggg gcgggtgtac ttccctcctt atgtccccat      7320
     gtctatatat aaaaatgtta ggcgtatagc cgttaatctc cgaaagttct tgacccattg      7380
     ctttgaaatt ctgactcaca acgttgcatt ctagcccagg aaggttttta ggtacacatt      7440
     tcttgaatat attatatata acctataaat gcgttacttt tgcgattttt agtataagcc      7500
     tttttccaat tataaagttt atataaattc atatatgaca catattgaaa aatttggtat      7560
     atgaaaacat gcacatattt tattagaacg ttgtgtcaac atttcaaagc tttaggtcaa      7620
     gaactttcgg aaatatacga ttttgaacat aacactaaac atggctctag gttagaaaga      7680
     gttctaagag gagatagaag tgaggaggag acgaacaggg aaagcgtaat gatgagatgt      7740
     agagggagag ggaggaggtg cagatgcaca gaaagagggg ggaggaggat cggatagaca      7800
     aagagagagg ggagaagatg gggaggagaa gatggacaag gagtggggga ggaggatatg      7860
     gacagagaga ggcgggagga ggttatggac aaagagaggg gaacgaggag aggtgcagag      7920
     agaggggaca gagataaggg gagcagagaa tgtaggacgt atatccaatt cccatccaca      7980
     aggcagtagg aaattacgta tataagaaat gtatggttcc tcttatcttt cttttccatt      8040
     taatctgtaa caagccacag caacgcgtgg acgggtacag ctagtgccat agtaagtaaa      8100
     gtaacacatc gttcagtcac aagaaaaatt cgatgtccgc aattccataa ataaagggtt      8160
     gtgaggaata gttatgcagg aagggaagga aagtcctgga gtttatgatg tttacgatcc      8220
     ggactactat tacggaaagg catcatatca gacttcgcaa ccctagcatg ttgattttat      8280
     cacttcacac tgacacaagg gctgtgatac gagagaagga aatttattat atgcttctca      8340
     caaaaggtta ttacttgtgt accactatcg agtgcaggaa agctcctcat ttattttcgt      8400
     gtgtgttgca tgaattttgg tctcacctag gttgtcttcc tgtgcggggt aagaagagag      8460
     tcatcggaat agagtctgat tttggttacg agaaacctgt gcagatagtg tcggcacact      8520
     gcgttcagag ccaagacgac gtcttcctgt ttgtgtcttg gcgtgtgctg gagtggggcg      8580
     ctgtttacag atgcacttgt tgcgagtctc tacacccgga acgcactgcc tttgccaact      8640
     attttacaaa cgtaatacat tctccattat ttcaatttat gtaatttaca ggaaattgtt      8700
     tgggtaatct tgaattttgt agctttagaa gtcattaaaa cattccacat tgatatttta      8760
     tgcattttta ttgttgcttg tcttttacat actcgcacac agcgcgcgcg cgcgcacaca      8820
     cacacacaca cacacacaca ctgcttgact ttttgagaag ggactattcc tatagcctac      8880
     ccatccagca tcatttcgta atatttttct aaggcgtctt ggaactgact ctactaactg      8940
     ccttgataat gtttcatagt ggtttatttg ccaccatgta tgttctatat tttcccaacg      9000
     gtcgcttgcg tttcttgatc caagtggcaa cgacctcgtt acttccgccc acatattctc      9060
     aataggatta aggtccggtg accgtggaac gaactcaatc agctttatgc gatcttggct      9120
     gcgaaaccat tcttgaacgg cgcagctttc atggatgggg ctgtggtcct gtaaataaat      9180
     aggtatcaag ttatttcatc tatttatatt tgaagaacgt atttgtaatt tacgcactgt      9240
     attaatgttt tgtatacggt gtctaacaag tcgggttcaa atatcgctaa gaggcctttg      9300
     tcagttaaac atttccgtgt ccatcatgtc agattgagca tgactggctg aatcatacca      9360
     aacgatgcag tttagtgctg ataagaagac catcggacca gttacccaac caggaggaac      9420
     ctctactgaa taccaggctt ctaactgaag tatattgcgt accatctata ccactaacgt      9480
     gatccctata ttaagcaact aacagaagtg cagcggctat agtccgaagt tatcatgccg      9540
     acagtacagg tcagaatctg cataaatata tgagtagctt cttatctgtc gtttgcaaat      9600
     aattgagata aacgccattt taattacgaa acgtgtattt ccatgctgct ttggtgatca      9660
     tttgcaacta agtgatgacc aaactaacat gcatacgtat taactccacg tttcgtaata      9720
     aaaatggcgt ttatctcagt tatttgcaaa cgacagatgt ccgcctttga taacaagcta      9780
     ctcatatcat cgtacagcaa gaacgcaggg tagtatacaa tttgtgcaaa cgccagtcag      9840
     cttttgtgag agccgaagag catgaaaggg acacagtagt tgggaaggga gtaacacagg      9900
     cctgtagctt tttccccaat gttgttcaat ctgttcattg agcaggctgt gaaggagaga      9960
     aaggagaaat ttggagaaag gattaaagtt cagggacaag aagtaaagac tttgcgattt     10020
     gccgatgacg tagtaattct gtcagagact gcaatggacc tagaagagca attgtatgga     10080
     atggacagtg tcttgaaaag agggtataaa ataaacatta acaaagcaaa aaaagagtaa     10140
     tggaattagt ctaagaaaat caggtgatgt ggaaggtaat agattaggaa acgagacatt     10200
     aaaagtggta gatgagtttt gttggttggg gggggggggg ggggttggag ggttgggttg     10260
     tggtttggag gcactagact actcaggtca tcaatcccta tttcggataa ggatggggaa     10320
     gtaaatcggg cgtgcccttt gaaaggaagc atcctgactt cgcctggagt gatttaggga     10380
     aatcatggaa aacctaaatc aggatggccg gaggtggatt tgaaccacca tcctcccgaa     10440
     tgcgggtcca gtgtgctaac cactgcgcta cctcgctccg ctgagttttg ttatttgggt     10500
     tgtaaaataa cttctgatgc ccggagtagt gaagacataa aatgtagaat gcaatgggag     10560
     gaaaagtatt tctgaagaag agaaattagt aatttaaggg atatggagtc ttttctgaag     10620
     gcatttgtcc gaagtgtggc cttgtacggc agtgaagcgt ggacgataaa gcagttcaga     10680
     caagaagagg atagctttcg aaatttctgc aacaggagaa tgctgaagag tagatgggta     10740
     gatcatgtga gtaatgagga cgtactgaac agaattgggg agaaaagaaa tttctggcat     10800
     atcttgtcta aaagacggga tcgattggta gggcacattc tgagacacca acgaatcgtc     10860
     aatttagtat tggaggggag cgtgtggggt aaaaatcgca ggggtagacg acgagatgga     10920
     tacagcaagc agattcaaag ggatgtgggc tgtctttctt actcagagac gaagagtttt     10980
     gcgcaagata gggtagcgtg gaggtggaga actgcatcaa accagtctac ggactgaaga     11040
     ctacaaccac aacaacacac cacatcatta cgtagtgtat gtcgtgtaag attattcaaa     11100
     aatagtcatt ttagacacag taatttcatt aataaagcac catcattaca gcagactttc     11160
     ttcaaatgtg tagtccgttt gttaccgaat ggattgcagt atcttcttag gcattatcgt     11220
     ttgctgtacc agaaaagaat taggaacagt atttgtcgca caggtaactg aaacaccaat     11280
     tcttagagta ctgtccacat ttcatggaat atgcaggtga tacccgaaaa catagtttat     11340
     ttaaattcca aaaattatta ttactgcgat caattttgat gttaaccacg catatctgat     11400
     cattagtgtg aaagcaggca cgttaaacag atgcagaaca gaatgttgta tttttataga     11460
     aacttccctc gaaatatttt ctctattagg cttatgcaag ttgcctgctt tatacatttt     11520
     tagtgaaacc ttcaacctgc ctgcaaaaag aaacatcaca ggttcagtaa agtggagtac     11580
     ctgttcgcgg tataatttta cactgcaaga gcctacgttt cttctctcta caaagttttg     11640
     atggaaaagt gcctgatcag tctggactca agcgaacgtt atccacacac gtgagattgt     11700
     aactacctac cagaaatata attcatgttt gaagaaagtt tgtttattaa tgcaactact     11760
     acgacaaaag cacttttttg aataattttc catggcatat tataacgatg ttctgtacac     11820
     gtccgcatga taaccgcaaa ccatagccac agcaccactc cctctatctc agaacaacgc     11880
     tcacgttaat gctataggag atgcgcaaaa acaatatcta tttcgtcgga aaagccggta     11940
     gccacgtact gatttacagg tctaatggtc tccttaggag gtataaaaaa cactggacag     12000
     tttgatattc tgtgtttgca acaatactgc gcacataact cccatcgatg tcgttacagg     12060
     taacgaccgc acaagggacg ttgaaaatta taaatagtgc cagcattgta taaattctta     12120
     tacattatga ttatgtgatg ctaatactag aatgaatatt aaatattagt ttaagtgttg     12180
     caaatataca ccttatcaga tgtgcagacg acacaaaaag aataatagag ggattataag     12240
     aaagaaaatg ggtccaagag aaagtacaga cgtttggaaa atccatagta atgagaccta     12300
     caaaaatatg gaaaaaaata tcagtcggag tggttaagtg agggttaact tttgttggac     12360
     atatgtatta aatgaatgat aaaaggctaa agaaacaatt attcgtatac ttctggaaga     12420
     ataaatcaac aatagcatga gcaaagaagt aaataaatac ttagaaagaa acaacatcaa     12480
     ataatctgaa ctaaccacaa taaagaatgt aataaagtta gaagctattg aaagaagacg     12540
     aaataagaaa ttggaaacaa cctgaaaaaa aaagaagtaa aatacaacat gggagattat     12600
     gacggataaa ttaatctata cattactgtc cctaattcta cgttcggata acagaagctc     12660
     ttcttatttt gaactccatg ttacgaagcc ttcccagaga tgttcacatc ttgaaaacaa     12720
     tgctgcattg atttctcttc gtttgtttgc ctctcttcgt tgtttgtgcc actgacagcg     12780
     atatcaagaa agatattttc tgagtctata attgtaaaga aaactgacgc ttacatctaa     12840
     tgttttcagt ataatcaatg gaaatgctcg aagaaatgtg aaacagcact ggtgaatgac     12900
     ttttgttgtc attgcgctta agacagaata cgcaaataat tgagacactt attactatgt     12960
     tagcggtcgg tgcatctgta tatttttatt agtgacaacg atcgactcat taaagctagt     13020
     tacggaattg cgagcagggc tcattgacat atacttcagg tgttcggacc cccagcaggc     13080
     gcgcgaggcg cgagctaagt ctctgtcgag cccgcttggc aatcacctcg gctcttattc     13140
     ttcctgttga tagtatgact gaagcttggc aacatcgcag tgtaagtctg tcaacgctgg     13200
     taccgaggtc ttacttccgg gttggcacag aactatgctc ataaattcac ttgatgtttc     13260
     ctgtaatttc cattgaataa tctgactggt ttctcagtcg agaggcgaca gaaggctatt     13320
     agttcatgct tttgggtcca gaaaattgtt tacacggcga aattccaact aatctcgtct     13380
     cttacgttgc gagttatatg ttctagcgat gtatgtggca gtaggaaaga gctggcgtgc     13440
     acagctcctc gctagctctg aggtaaagta gtcgtctgcc acggagaggt ggctttggtc     13500
     aatggttcgg gtctcattgg agtagaattt tttagctgtt ttcgtgacag gagttgcacg     13560
     aatccacatc gaaaacaaca agaaacctct tgtggttact tgctatattc tctcagatta     13620
     tgggaaagtc tgacaacgtt ctggtagttt accaaatctg tccctgtaga atcgaactga     13680
     ttccaagcta attatgacgc caatcgatgt tcgacgtgta ttttcgtctg gaaataattt     13740
     ttgtcgaagg ttattcgagt aggggcagga aagataaaca tttgaggaca tatgatcgaa     13800
     agagtaggtg aggaatgggt gacttccaaa gcacactatt ggatgttttg tttgtgaaat     13860
     caacgggaat tattatggtg tagtactaac acatgatgta attttttagg tcgtttgtcc     13920
     ttacagtgcg actaaatggt gtctcagttg tttgcaaaaa atgggcgcac cctggcgttg     13980
     tggttgcact ttgctcagta taaaaatctt ttagtactca gtcattaatt tcttcttaag     14040
     atgtcagcat gagagcatca taactcgtca ctagtaacaa tcgtgagtag gaatcctgat     14100
     tgagcggcct gatgacgttc aagaaaaatg tggtaatagt cacccctatg accctttttc     14160
     cgattctact ttacgacgtt tagattatgt tcatatatca gtcagaaaaa ttcaatacgt     14220
     gactgtaata taagtactag aacttgaagt aaggatataa cagccggtaa atagactcac     14280
     agcggcgcgc cgctgtcact gagtccgcag gcggcagccg cgatgcggcc gctggcgcgt     14340
     cgccgtagcc ggtgcccact actcccgaga gtaaacagtt cagttttgat gcagcagcga     14400
     gctcttttgt gtaattattt ctgggagttt tcgctgttac atttgaggtt cttccacact     14460
     gataacaaag acagccgata tgcggttaaa aaaaaaaaat tgaaggttgt tggattcgat     14520
     ctcgcgactg cttacatata cgcttgtaaa cgcgactttt accacgagac cacgcgctca     14580
     tacagtacag aactccctcg agaaggaaat aacacttcct cctgacagta ccgcattcta     14640
     cagtgttgcc agatcgtgca tatcgccgga cttagaattc tgaggggcga tcgaatttat     14700
     tgtccacact gcgcgaccga ctcggactta gcctctgcgt cggccggccg gcgatcaatt     14760
     tttttgtcta agactgtaca                                                 14780
//
ID   DNA-2_PBa   repbase;    DNA;    INV; 1569 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1569
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 590-590 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. TSDs are uncertain.
XX
SQ   Sequence 1569 BP; 486 A; 309 C; 290 G; 484 T; 0 other;
     ccacatagaa cataacctcc agtggacgtc cattgaacct ccatggctcc attaaacttc        60
     catcgaacgt ctatctccac gatggaagtc agatagacgt tcattagagg tccagggaac       120
     ctccacggtg gatggtgctc taggattcca ccgtggacgt ccattagccg tccagcaaat       180
     ctccatgggg atggtgctct aggattccac cgtggacgtc cattagccgt ccagcgaacc       240
     tccatggtgg atggtctcta ggattccacc gtggacgtcc attagccgtc cagcgaacct       300
     tcacggtgga tggtcccaca cggaacatga catccattag aggtccacat aacctccacg       360
     gcctccatgc gacatctatc tccatggtga aagtcagata aatctctaat ggagacctat       420
     actatctcca tgatggagct ctaatggagc tctaccaaac tccattagac gtcttatgga       480
     ggttgtatgg atgaattaca gatgtttcat gaaactttca tggatcatat acagagctta       540
     attggaggtt ttagatcctt tgtagatgat tactttatga taaaaattga gaatatatac       600
     ttaataaata aatttataaa taaattaaaa atttattgca tgtatcttat ttattcgtat       660
     ttgattgtat ataaatgatt ataccaaaca caagaaaaca tatattgtcg aataagagaa       720
     atatctcacg tatttaatac gatcaataaa tatataaatg agtaaataga atatatacgt       780
     aaatttataa acactactca catggaacat gatattaaaa atccatataa catataatct       840
     tcacatatat atataacata taattttcct ttatatatat aattaaatta tctacaaaaa       900
     ttgcacacgc tatcaggaca ttgacattga gactatttga atcttatgac aatgtgataa       960
     catttactga tcggagatct gtcatatttt tacatcaaaa ttctaagttt aattatacta      1020
     ttgttctagt atctgatttc agccgatcac ataggtgaag cgagctcgac cgtgtatact      1080
     acaaggatgg gtgaccctcg gaaaaattat gtgacgttac cgactattta caagataaaa      1140
     aagatttcat tagttccatt gcacgttacg tatgtatgtg cgcttcgttc cttcaaagaa      1200
     atatttttgt tcagcatcat aaaaaattct ttttattaac tttttctgta gaggtcttct      1260
     ggagggttca tggacgtcta atggaagtta caaacctcca tgatggacct ctaatggaca      1320
     tctattagag gtttttgttc cgtgtgggtc gtctaccgag actccatgga ccctctatta      1380
     gcgatccacc taacgtctaa cagacgtcta tggaagacgt ctaatagagg tctcatagac      1440
     ttccacgaag cggaactgtg gatttcttgt ggacgtctac tggaaatcta atggccatct      1500
     aatggatgtt ccgaatatcc atgaccgacg tctaatggac gtctactgga gggttttgtt      1560
     ctatgtggg                                                              1569
//
ID   DNA-2_PPo   repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-528
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2725-2725 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~40bp TIRs.
XX
SQ   Sequence 528 BP; 201 A; 71 C; 73 G; 183 T; 0 other;
     ttatagtgtg tctaaataag atagattagt ttgataaatg acgcatatga agtatcgaat        60
     tcaatttgta tgaaggcaaa tgccatactt aatagacagg tatcgtagtg acgaaacaaa       120
     cacgcatagc gaacaatttt gaactatcga tattcggttt aaataattat cgaactcaac       180
     taaaattatt attttcttat taactaattt agaggacaat tctagtattg attatagtgt       240
     agagaattta gcgatgacag aaataatagc gaaatccaat tcgattacgt acggctgtag       300
     tagtaataaa catttattta ctctcattat ttgttatggt cattattaat ttgagaaaac       360
     agtgtttttt tttatttcat aagttataac tataaatcta tcgattccaa cttctataag       420
     aataaaaatc gaaaatcgat aagattcatg actgatttta cacaacccat ccctactaaa       480
     tttgaaatga attgtcaaac taatctaaat tatttagaca cactataa                    528
//
ID   DNA-2_RPr   repbase;    DNA;    INV; 1170 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 20.10, Created)
DT   20-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1170
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3217-3217 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1170 BP; 376 A; 206 C; 211 G; 377 T; 0 other;
     cagggtgttc attttaagac ggctcaaatg catttcatgc ttaaacggtt gatctgagca        60
     aaaaatggta gaggaaaaat ttgttgcccg tcacctctag tttcagaata tgtgacttga       120
     ttttagattc ctgcccgcat acgcggctga cgcgcgacca aaagtgaggg ttcgcagttg       180
     acccccattt tcatatacac agttttaaag agtataaaaa gttatgaaag aaaccggaaa       240
     ccgcaattcg atatcttcaa aattaaaggt gctaggccat ttcaaaatct ggtatttatt       300
     aatcatattt caatttttta acttgttatc aaagagaaag aagagcacgc gataggtcat       360
     tttatgtatt ttttcataat actcgcaagc caggttagcc aggaggttat caactgctct       420
     ctgtatctga ggaggcacct ttgaaggcac agtacatgct tcacaagttg agtaaagtgc       480
     attatttgat aaattaagga ataagtttga tcctttacat gaaagatatt gatcacttaa       540
     atatgtggca ggaggtttcc aatttttttg gtaattaaac gcaactctcc caaaattacc       600
     aaataattat taaaccttct tgtttgtaac agatgtaaaa ttaattttta gccattttgt       660
     gtatgcttga gaacatctaa agctcttaac atttgatttt tcttagaaaa atcactcgga       720
     aaacgactta tttcccgata ttaagaaaaa tactagcttt actgccttgg caatattttt       780
     agtagaaagg ggatgaaaaa atacataaaa atgacctatc gcgtgctctt ctttctcttt       840
     gataacaagt taaaaaattg aaatatgatt aataaatacc agattttgaa atggcctagc       900
     acctttaatt ttgaagatat cgaattgcgg tttccggttt ctttcataac tttttatact       960
     ctttaaaact gtgtatatga aaatgggggt caactgcgaa ccctcacttt tggtcgcgcg      1020
     tcagccgcgt atgcgggcag gaatctaaaa tcaagtcaca tattctgaaa ctagaggtga      1080
     cgggcaacaa atttttcctc taccattttt tgctcagatc aaccgtttaa gcatgaaatg      1140
     catttgagcc gtcttaaaat gaacaccctg                                       1170
//
ID   DNA-3A_PPo  repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-3A_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-327
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2726-2726 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The 5' end sequence 1-67 is
CC   complementary to the 3' sub-terminal sequence 231-297. ~14bp
CC   TSDs.
XX
SQ   Sequence 327 BP; 104 A; 61 C; 68 G; 94 T; 0 other;
     caaatataat gttcgtaaga tacgggtttc ttaccacgat tgaattgttt tagttcccgg        60
     tagtttgtcg acagaaaaca gctagtgtgg actttagtga aaacgaggac aataatagta       120
     gtggtcgccg tatcaggaga aaagtagacc gatatggctt cgtgtaactt tttttttcac       180
     actaccgcat cacttcagtc agcccgtgaa catggcgcat gcaactgtgc cgaaatatcg       240
     ggagctaaaa caattcaatc gtggtaagaa acccgtatct tacgaacatt atatttgtaa       300
     aaaccacgac agtttaaagt tatatat                                           327
//
ID   DNA-3B_PPo  repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-3_PPo;
KW   DNA-3B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-216
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2727-2727 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The sequence 1-57 is complementary
CC   to the 3' sub-terminal sequence 132-188. ~9bp TSDs.
XX
SQ   Sequence 216 BP; 73 A; 37 C; 42 G; 64 T; 0 other;
     tacaaatata atgttcgtaa gatacgggtt tcttaccacg attgaattgt tttagctccc        60
     gatatttcgg cacagttgca tgcgccatgt tcacgggctg actgaagtga tgcggtagtg       120
     tgaaaaaaaa aagctaaaac aattcaatcg tggtaagaaa cccgtatctt acgaacatta       180
     tatttgtaaa aaccacgaca gtttaaagtt atatat                                 216
//
ID   DNA-3_AG    repbase;    DNA;    INV; 369 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-369
RA   Jurka J.;
RT   "Non-autonomous DNA transposons from mosquito.";
RL   Repbase Reports 10(9), 1428-1428 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA tsd. >97% identical to consensus. Likely Mariner/Tc1.
XX
SQ   Sequence 369 BP; 114 A; 76 C; 69 G; 110 T; 0 other;
     tacaggcggt ccccgagata cacggtacct cttatacgcg gattcggaga tacgcggttt        60
     tctaaatttg acaattcttt gagcaaattg tactgatttg acacatcaat tgcaaattgc       120
     caaataattt ccgttttgat cgaatgttaa aaactatttc aaaaggttta aaacagttat       180
     attcagtcag aatcatatca aataattcat aaagtgacta aaaccgcccc ctacttgcaa       240
     aattacacga aaattagtga tattttagct ggaaatcacg agattcgact tacgcggaaa       300
     ttcgagatac gcggtatttt gcggccgttt tcggtcccca ttaaccgtgt atctcgggga       360
     ccgcctgta                                                               369
//
ID   DNA-3_BTa   repbase;    DNA;    INV; 1977 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1977
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 626-626 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are unknown.
XX
SQ   Sequence 1977 BP; 567 A; 400 C; 381 G; 629 T; 0 other;
     aaaaattggc ctccggccaa tttatgcgcg gcgcttcgcg ccgcgtaccg gcgctacgcg        60
     ccggcatttg gggggcttcg cccccccatc cgcttagcgg attggtgcgg ggaccgcacg       120
     ggactttctc gctcgagccg gcgcttcgcg ccggcataga cacttttact ggaatattta       180
     gaaaaatact gccaatttta caaaatcata aagtttgatt ggaattttga tcacaggata       240
     atagttatga aatttttatt caaaccactg aactttattg taaatgtctt cgcgatatgt       300
     gatgaattca tatattcgga ctcgacttgt tgattttatg aggcatcttc aattaaatat       360
     gtaattgatt aacaaagtct cctgtcaaag atggcgatcc gtaaaaatct tagcttttct       420
     acgattcatt aggatccatt agattcattg acatcatact tcagatacga ttttatatta       480
     taatctctcc ttaagcacgg tcaaaagcca tcaaatatct acttgaatgg gtagaatgac       540
     tattcgatgt tcaaatagtc ttaaaactaa acggttttcg cttagcatct cccaaatttt       600
     aaatttggcg ggcgaatcta cctgctggaa ggttcaccac acgcccgcca ggagcgccat       660
     ctccttaccg cgtatccctg taattcaaag cgaaaacaat agagagcgct gagagcgcca       720
     tctccttgct gctgtcaacc aaacctcggg ttctaacaat ttataacctc ctttattaag       780
     taacaagcat taaatcagtc atatttgtgc cgtattatta tattatattt gtgcttagta       840
     cctcgtaaaa aggaaccgcg aaagatggaa tctgccggga ttctaaattc attaacaaca       900
     aacatattag tatttaataa agatgtaagt gtcagttctt gcgtcagctt gatgactcat       960
     agtaactata tattgtaagt acctacctaa ttagttgtct aattttgctt ggtgtatacc      1020
     tacggagtaa ttttggaaat agtatatgat gcattatata atgcatttga attcctaggt      1080
     ttcacctgac tcaaagcgtt tgctgctatt atctagaagc gttccgactc atttatcaga      1140
     gaattgagcg tttcctatcg gcccctctgc aattatgaga ttagtccaag aatcctttag      1200
     gaacttaaat taatgactca gatggtgctt ttgagccaac tttcaaagaa ttaaaggcat      1260
     tttttcaaaa tctacagtcc atgagctctc cgtgtgaccg aagtgctctc ctcgctatat      1320
     gacgcgtaac ccttcaattt ttagtttagt ccaaagacct cataggaact tacattattg      1380
     aaccaggtgg tgctcttatg ccaactttcg aagaaatgaa aggcattttt tttcaaattt      1440
     acagtctttg aaaatgagtt gtttgtgtga tgtcgcggag caaagtgccc tacttttggg      1500
     cctcgtaatc ccttgaattt tgagtttagt ccaaagatct tttaggaact taaattaatg      1560
     acccaggtga tgtgcttgat gcccactttt aaagaattaa aggcattttt caaaatttac      1620
     ggtccctcaa aatgagcttt ccgtgtgatt ttgctgaaaa tggaccttta acccaatttg      1680
     accctagccc ccccaaattt tagcgtaccc caaaatcgtt ggacgtgcat aaggagacca      1740
     taaatatggt gttctgtgag aattttgaat gaaatcgaac agatagattc tgagatatcg      1800
     ctgtagacag atttggggga cgccggacgg acggacacac attttttcaa gtatggttat      1860
     tttgactcct gggaccttaa aacgtctaga aatgatgaaa tttcaacttt tttttttttt      1920
     ttttcttgga ggatgacaat acttcctctc taccctaggg gagcgagaaa gtaaaaa         1977
//
ID   DNA-3_CQ    repbase;    DNA;    INV; 2527 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2527
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 44-44 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >94%
CC   identity. ~10-bp TIRs.
XX
SQ   Sequence 2527 BP; 839 A; 446 C; 430 G; 806 T; 6 other;
     cccaagtagc atcgcgaaac atgtttcaaa tggctaagtc caaactatgt tatatcaggg        60
     gcgtaaaaaa gttacatttg ttacaaccat ttggattttg tgggcgacac ttattgacaa       120
     ctaatttgaa acaaaatata atgagtgtct ttgaccttct ccttgccttc tgggaaactg       180
     aaaaagctga tgagttgtaa catattttgt tatcattaag ttatttttgt aacaacttga       240
     caactttccg attgttttta tttagtaaga actatgttgt gaatatgtag cggtaacatt       300
     cattagccaa acaaatttac gtaatgcgtg attgttttga ttcatttagt ttatgtccga       360
     cgagtaaaaa ctagtgcgga ctttgaagaa aaggaaaggt ccataatcgc tttcggattc       420
     cgaaatctgg cgtaagaacc agcgaaatgt agcgtattaa aaaggcgaaa ctggtaaaca       480
     taaatacaga ccccattgaa cagcatacag aaaccagaac ctacaatgac tagcggatgg       540
     attcatccca acccctgatt cggcctgacg tctgccatag attccgacaa tgatgcattg       600
     caaaattagt ctgacgatta cgagcctgca gatttccctc aaacctaacc cagagaagat       660
     ctccagaatt ggggaatcga ccaccggaac ataaaaaagt gtttttatac gtttttgtgc       720
     ccaacaatgc gctttcaaaa gacctacaat ccaaagtgtc tagcggattt actggcgaaa       780
     gctgcgtgat agtcatttcc ggtcggcaat tctttctttt ttcagtctgc acggcacaaa       840
     tcatttttaa tctaacgaaa acatgaactg ctcaacacaa ctaacccaaa acgtttggca       900
     tgttgacact tcccgctaca gacggacaaa atgtgaacac ttgtttgcaa cataacaaaa       960
     catttgttga gatgctccaa aaacattatc tcaacaaaaa tgcaacaaac cgaaacttgg      1020
     caaaaatgtc aaacagcagg gtcgtatcaa gggtcgtgtt aagacgtacg ataatgattt      1080
     tacatgcaat ccgaatgttt tttactttga aatactgtag aaaatacttt taatatgaag      1140
     tcttcataat tttcggaatt caaagataca cgggctaata atgatcaaaa atatgactct      1200
     gaagcagaat gaatcggcat acgacgttct tacaacgaca ttcagtttgt tctagaggct      1260
     tcatcttgca attttatgct tgtcgcgtaa aatttcttgg tttgcctgaa aaatgtgtga      1320
     aaacattggt tcggattgaa acccgatctt gcctcattct catgtcaaac gtttctcaac      1380
     gcagcaagct aaaacttgtt aaaagctctc tgagtgcagg gcgatcaagg gtcgtgttaa      1440
     catatatctc aattggattt cgaaataata tccgaaggtc ttcggggctt tgaagacacg      1500
     taaagcgtat tctacctggc acgacagctc ggtttctagc ggaatgccaa gcagttatcc      1560
     gaaatagagc aaatgtatgt ctctctgaag gtttaattgg tttaaaattg gtwaaatata      1620
     tttaattatt tctaatctaa ttgtaaatac tttcaattca aaatttcttt gtgcatagaa      1680
     aatataatcg ataaattaaa tgtgtcagtt tagatagaca attattttgc tatatatttt      1740
     ttttaattgg tgcctcgatt tgaccctgtt ttcgatggag gccatgctgt ttctttcatt      1800
     cttgtaattt tttgatgatt acaaattaaa ttgttccaga attatgcaat taaactgatt      1860
     aaatttggtt tgaaatgaat cacattattc aawgcttgag gttttcttct gactatctga      1920
     cgtatttata gataaaaaat cattagcatt tattttgcag cmatttgaaa tatttttcaa      1980
     ggcaaaatat ccttaaaaaa taaggcccgt aaaaaaatta aaagtataat taaatttcgt      2040
     tcgaagaaag ttaattcgca gttkaatcag atgtttaatg accattataa ctaccataat      2100
     aagatactgw tccgaagaag gaatgaaaac cattttcgaa cttgtaattt tttttcatca      2160
     tcagcaaaaa cataattgag acatcaatat tcctaaatat gttttgcatt tgttgagggg      2220
     aagaaatatc tgacagaata acttaacttc aagtaaacac tgaaatcaac gtgttaacat      2280
     aaaattgctg caacttaaac ataacatacc tggtacaact ttacaaaatt tcttattttg      2340
     acaacttaat cgaaacattt tgacaacatt ttttcaacaa wtttcttaac ttgaaagatg      2400
     tttcaaatca gcttccaaat tgcgcttttc cagtcacgcc aaaggttaca cattagtcgt      2460
     atctactcat tttgtttgtt tcaaacttgt ctggattaag catcggtgac aaataatgtt      2520
     acttggg                                                                2527
//
ID   DNA-3_LMi   repbase;    DNA;    INV; 2218 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.11, Created)
DT   27-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous; DNA-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2218
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2957-2957 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TIRs are ~10-bp long. TSDs are
CC   uncertain, and are not 8-bp long or TA.
XX
SQ   Sequence 2218 BP; 699 A; 407 C; 411 G; 700 T; 1 other;
     tagggtattt gactgttttc tggaaatcgt tttaaattgt taattatgtc atattatggt        60
     ccgaacatgc ttttttacct cgtggatttc agtacttttt taaaaaaaga aatgaaattc       120
     aaataatttg aaagcccgct aaaacgctac atttgagtca cgtgatgcct gtgacgtcat       180
     acaacacgct gctgctgctg ctgctctcgt aagataaaca aatacctgta tattgtttgg       240
     gccgaggcct cgtgtttggg cgttaacgtt tgcataatga cctacaaata ttgcttagtt       300
     ccgcactgta ccaatacatc tgtcaagact ccagaaaaat tgttcttgca agtaccaaaa       360
     aatgagaaga tacgcaaaaa gtggttgaca ctggcgcgaa gagatccaaa tgaaatagcg       420
     gctacttcat gtgtgtattt ctgtgaggat cattttgatc taagtaaaca atattattcc       480
     attggtaaac taaactgttt agtatcattc tctttttctg caaaggtgta aagtagtatt       540
     atgtgtaggt taatgacctg atgtttacat ttgcgaagta aaacttcata atgttacacg       600
     cctacgattt atgtgtaatt aaagccgttt cctaatatat ttggtgaaag aacaacatga       660
     atattgttgc agcccactat aaaagtatag cactgattat ttatctccag taagtgcaat       720
     tttatcacca atagatctta gataaaataa cgtaagcctt ttcttctgca cagggctcta       780
     ccaagcaatt ttcattgcaa gtaaataacg tttcaactga ttagcgtttt tttaattaaa       840
     gcatggggct tcgtatgtgg acgagtaaac gtaaatggat tagtttgtag tgtcaaaagt       900
     agtgacacat tcatatcaaa ccaaatcttg aatatgtaag gaaaatactg atttgcatgg       960
     cagaaagttt acacacaatc gcaaacattc actcacaaaa acaacaaacc agaaaagcgc      1020
     tgtaatttcg gcgctataaa tttattccat cgtgtctcgc tcgcaatgtt tacgtgaaag      1080
     tgacatgcct ttggctacgc gaaatgtgcg ttgccaacct acgagcgata tgaaaacacc      1140
     gccgacgcaa cccgctgtcc ctgttctaga mtatagatat attgtataac tatacacaag      1200
     gcatttttgc tgtattttac aggttttgat gtttcacttt gcaccagtat tgaagtagtt      1260
     aaataaaatt actcccttaa ctgcgtgctt tactgggtta aattttacta actatcccgg      1320
     cggcttcctg tgactatgtt ggcaacagat gctgaatagc gagaatcatg agacgtcgcc      1380
     attagccaat cgcgtgacag cgcaaatatt ttgtcgtgaa acctttgatt tacgagggca      1440
     gttactttta ctgaccggac aagggtacat acaagaatca tagagcagga acagcattat      1500
     ttatttactt catggtctgt acgatacact aatctagtca ttctatgtgg tctgaacatc      1560
     tggacaaaga ttttctatcg tgttgttgat gttgccaaca taatcactca aggccgcttg      1620
     gatagaagat aaaatttcac cctttattgc ataatatggt gacttcagat taagtctgct      1680
     gacatcaaca aatagggtac ttttttccaa tggcataaaa tatctctcga aataattagc      1740
     tttaaaatgt aggtatgcgt tacttacaat gcagttttca cgtttcttat ttctggcacg      1800
     taaaaatttg gattgttttt aaagaatgaa gacaccataa ttgcatcaac tttagggagg      1860
     tttccgctgt cagccttcac ataaccatct tccattgtgg cataaaaact gtaaacgcgt      1920
     ttagatcacg aaaaaactga acttaaagct gcgaaatgga ggaaacgcgt acaataatac      1980
     agctccgact tctagttgcc gcgctgtagg tgttctatga cgtcaccagt acttcagcca      2040
     ataacggagc gttttcgatc acgtgatcta atcgtgaaat ttgatgattt ttaagcttta      2100
     attacgtaaa aataacagat gttttgtaag aattatgagc gaaaatgctg tctgaatgtt      2160
     ataatcattc agaataacaa caattcgaac catattttta acacaggaaa atacccta        2218
//
ID   DNA-4B_PBa  repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4B_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-404
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 591-591 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus. TSDs are putatively TTAA.
XX
SQ   Sequence 404 BP; 160 A; 36 C; 43 G; 165 T; 0 other;
     ggatatatta tttattttta tttacaatga aaaaaattat gaaattatag attattctag        60
     atcgcattta aaagtaatac aaaaaatttt gcggcggttt agaatctgga tcaaaaatta       120
     tttaaatata aagtagaaat gtgttttaat aaaaatgtaa ttaagaaata atcttgaata       180
     cttaaagtac ttatataaaa aaaattgaga tttttgtcat tatttcttaa ttacatttcc       240
     attagagcac acttctactt atttatttaa ataatttttg atccaggttc taaaccgcta       300
     aacttttttg tattattttt aaatgtaacg atttagaata atctgtaagt ttttcataat       360
     tttttcatgt atataaaaat tataaaaata ggtgtaatac atcc                        404
//
ID   DNA-4_AAe   repbase;    DNA;    INV; 3055 BP.
XX
AC   .
XX
DT   11-APR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3055
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1258-1258 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. TIRs are ~130 bp long. It includes
CC   a partial sequence of RTE non-LTR retrotransposon (849-1695).
CC   Likely
CC   a composite non-autonomous transposon.
XX
SQ   Sequence 3055 BP; 970 A; 557 C; 619 G; 909 T; 0 other;
     caaaggagat tgggcaaaaa tgtatggagt ttggtcccgg aatgtacacg gatgacttat        60
     atatcatttg aaagatctaa atgagacaaa aaaaagttga tatggggcca aaaatattcg       120
     tcgtgggaga aaaaagttat gtgtgctgga atggtgtaag aagaggtatg ttttggacag       180
     ttcctattga ataatattta cttgcgcaaa tgttttgaat tcgtgcctat gtatgtgctt       240
     aggtatgttt ttatcttaat tgtaaatatt ttaaaaatgt tgtgatttga cacagatttc       300
     agaacgtttt gagttgctga aatgtgaata cttaaaacat acggtgataa aaaaatataa       360
     agatataggt atgagcgttt cacaaacacg tcactttagg taacagttgg acacaaatat       420
     caaatcgtat tatcctattt cagtgttcta gcaatatgtt tgtataaacc ggcggtttac       480
     tcaggaagga ttttccagac tatatccgtt ttatcattac agtggttgcg ttgttgtatt       540
     ctgtactaca ctggaagaaa tacctcgctt gtcgtacaca gcttcagcgt gctggaaatc       600
     cgcgcgtcag ttacctcact aatatctttg atatcaataa cattatacta gcatgctatt       660
     gtttctcaga gaaggagatc atttgaacta gtagtaactg tagtgtttga ctgtttgctg       720
     tgaacaaact gccaataatt cgagcagaac catttcggtt tgctatcaat gtcagctcca       780
     ttggcgacgc ctgagcacat gtggctccac aaatgcttcg ctaagaacgc taaatactca       840
     tgaggatgtc aataatgtga atgtttagaa gtaatcatac catcttccag agctgcgcga       900
     cacacttgag ctgggaacag ctttcatcgt gatgaacgac atgcaaaaac atgagatcgg       960
     atggtggtcg atcaacaaaa gagtgtgcat gttgaggatc aacggtcgat caacggatga      1020
     caaagacgca gctggaacgc aagtaggacc gccacccatg tttccacgtt aagatcattg      1080
     taggagatta gaacgccaag ataaggaatt gagatggacg attgggaaga tcagtgctgt      1140
     cggactggca aacatgaatg tccaatgctt gactgttttg ccgcctctaa gaatatggtc      1200
     attatggtct agcacctact tccaagataa ccttccgtac caatggtgat cgctagttat      1260
     ccacagcaaa tgaaatctcg aatcggtcag gtattgcttg atagattgca catctccgac      1320
     ataatcaacg tcaaaatcta tcgtggtgct aacattcact ctacccacta cctgataatt      1380
     ataaaaatgc gcttcaaact tcctgtcgtt aacaatgaac ggtaccgacg cccgcctcag      1440
     catgaccttc agcgtctgaa ttacacggat gtcgccacag catcgttcta catctctagc      1500
     aagcgtaacc ggaataggtt ttgcttgctg aaacccttct tggctattgt actacagtaa      1560
     aaatagccat caactcacag gtggagtcat tgtgcgttga acgtagtcta tggtacgatt      1620
     ggtttgctga agagtttaga attattctag aggaaaaaaa cgtgaagcac catacacaga      1680
     agcggaagca gcagacttgt gttgatgaca caggaccgga ggttcaaggc aaaggagagc      1740
     atttcaacgt tcgaatgttg gacaaaagca gccaaccaga tcccactttg agtgaagtta      1800
     aggatgacgt tcaacagctc aagaataaca cagcaattgt tgaggatggt atatgagtgg      1860
     aactcatcaa gatgagcccg gaaaagttga tcgcttgtct gcatcggctg atagtaatta      1920
     ctattcttaa gaacctggca gttataacat ctgcaagaag agtagagcca aggggttaaa      1980
     tactctgcct acagaaaacg ttagtgctta tctatctgtc ttttcttcta tctgtaaaac      2040
     ttgcataaaa attgtcaagg gcttgtacac aagttactgg agggtaacag acggagagag      2100
     ataggagata atataagata tgcactcatt agaaaaaaat aagttcattg gactccacgg      2160
     cattcgtata ccaattcgta aaacgataat gattgacatt ttaacttaag actggttgaa      2220
     taatgtagga gctcaggtga tactaaacat ccacgtatgc ggtatacagc gcgagatggt      2280
     ttatactagc gagctagatt gccattgatt taaacacatg aaatcctaaa actacgcata      2340
     tgttactgcg tagcatttag caatgagcat ttcaactcac atttaacgtt ttttgatgct      2400
     gatgatgttg ttcattgagg ttgagtgggt tgagctgatg gttttattga tctcttcgta      2460
     aaattcgtcc tggagaaata tttacttcag caaaaacaat acagtcagtt cttttataag      2520
     acaccacaca cttttctttc accactgttt cccaattact tttcatcgaa tgaggctgac      2580
     tttttttaga atacaagtcg taatattacc ttattacgaa caaaaaatat cgtataggtc      2640
     ggttaaaaaa ccgttaggaa ttgtgattag tataatgtgg atagcagggt ctggcagaaa      2700
     actttactga ataaacatat gtattttaaa atgattttta atgttattac ggtctaacat      2760
     gtaatgtttt tcatctttga atcaaagtcc taattcactt ctttaaaaca tagaacatct      2820
     aatcatcata taggtgcaga aaaatatatg ttttcatttt taatcgataa aaaatatagc      2880
     aaaaatataa taaaatacat agaaaatcca tctcaaacca tgcggaataa cttttttctc      2940
     ccacgacgga tatttttgac cccataccaa ctttttcttg tctcattcag atctttcaaa      3000
     tgacatatga gtcatctgtg tacattccgg gcccagattt gcccaatctc ctttg           3055
//
ID   DNA-4_AG    repbase;    DNA;    INV; 325 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-325
RA   Jurka J.;
RT   "Non-autonomous DNA transposons from mosquito.";
RL   Repbase Reports 10(9), 1429-1429 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA tsd. >98% identical to consensus. Probably still active.
CC   Likely Mariner/Tc1.
XX
SQ   Sequence 325 BP; 116 A; 60 C; 49 G; 100 T; 0 other;
     tacagtcttt ccccgagtta cgcgacactc gagttacgcg aattcgagtt acgcgaattt        60
     ttatttttga cagttcagat gtcaaatcag tacaattttc tccatcaatt gtcaaatgaa       120
     aaataattac cgataaataa ccaaattttc tacaccaatt gcatcaaata agtattaaat       180
     tacataaatg aactaaattc aatcaaaaat tatgataaat aaagtatatt tttgctgtaa       240
     catgtgatat tcgacttacg cgaaaatccg agttacgcga atgtctccgg aacgcattat       300
     tcgcgtaact cggggaaaga ctgta                                             325
//
ID   DNA-4_BTa   repbase;    DNA;    INV; 554 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-554
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 627-627 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are unknown.
XX
SQ   Sequence 554 BP; 169 A; 106 C; 108 G; 171 T; 0 other;
     aatggaccac tagataaggt acgaatttca gcattctgat acatgtttct taaccaaaat        60
     tttacgtaaa acacgatgca cacaacgaaa attaccgaaa ttaactcctt acgaagatat       120
     ttaatgattc ttgatgcgtg aattcaaacc acccgctcat gaaaactcaa tgctctacgt       180
     gattcacatc gcgcgctaaa cgttatcatg acagtctctg cgatataaaa atctggcaac       240
     ctcaatcttg acgctttggc tcagttatag caaattgcta atagtttgaa caacacatgg       300
     tgggaaatga acattgctcg attgagaagc ttgctgaaac cgttgtagtg ggcgatttga       360
     ctcacgtaga gctttgagtt tcttgtgagc gggcagttca aattcctcgt aaccaatgtg       420
     aaataaaaac gttaatatct tcgttaggag ttggtttcag taattttcgt tgtgtgaatc       480
     gtgttctacg tgaaattctg gttaagaaac atgtatcaga tcgcttaaat tcgtaccttg       540
     tctagtggtc catt                                                         554
//
ID   DNA-4_CQ    repbase;    DNA;    INV; 3352 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3352
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 45-45 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity. ~1500 bp TIRs.
XX
SQ   Sequence 3352 BP; 1186 A; 463 C; 470 G; 1233 T; 0 other;
     cagagacgca tcgagctcta caggctcaat aaaaactcct tacctgctct gtatggtaga        60
     acagagctaa gctctgtatg cagcgaacag agccagctct gtatggggaa aaataatatt       120
     gatttgcata tatctcaaaa acgataagtt ttagaaagtt gacatgttct agaaagttgc       180
     tggtaccaaa aggttctata ttattgtctc agacgtcatt acaatttggt tgattttagt       240
     tgtgcaaaac aagaaaaaac tatttatttt ctaagataca aggtatagaa tatttttgtt       300
     ttcgacaaag ttgctcaact accaaaaatg aacaactctc tcgaagacac caaagctcta       360
     tcttcaatag ataccgaaat aaaaaataaa aactattttt ataataaata ctgcttgcga       420
     caaacacaaa gcgaccgcgt cgtaggcaca ggtaatatga ggcatgtttg gtagagatcg       480
     tctgaagtga aaactagtat agcagagtgt tcatagagag tttttatgtt aaatgctctc       540
     gtctggatgg ttgaaagaaa tttcagataa aattatacaa atttataaaa ttatattctt       600
     tttattgtac tggtaagtaa ttaagattag aaacaacaaa attattgcac agctattttt       660
     atgtttgtct tgacaaaaca aatgtttaac aaaattacaa gttttgtaca acaaattaag       720
     ataaaaaaca atttcaaata cgcaagttaa aaaaataaaa actaaatctt ctaacaatta       780
     ttttaatttt ataaaaagaa aatcagttaa cataagttta accttataaa gatttcagga       840
     aacttttcta ttttatttaa ttcaacagaa aaaaaactat atttttcaag caagataacc       900
     ataagaaagt tttaagctct aaataatctc tatgatattt ttttacattt tgtcaccttt       960
     tttaaataaa ataagaaaat gaaattaaat agcaaaaacc attttttctt tatttctcaa      1020
     gccaggaaat cagtgaagag tttcaagctc taaatgctct ctatggaaat ttgccatttt      1080
     attacctgta ttctaaatat ttttttattt ttcaaacaaa ggaaagcagt gaagagtttt      1140
     tagctctaaa tgctctctat ggaaatttgc cattttatta cctgtattct aaatattttt      1200
     ttatttttca aacaaaggaa agcagtgaag agtttttagc tctaaatgct ctctatggaa      1260
     atttgccatt ttattacctg tattctaaat atttttttat ttttcaaaca aaggaaagca      1320
     gtgaagagtt tttagctcta aatgctctct atggaaattt gccattttat tacctgtatt      1380
     ctaaatattt ttttattttt caaacaaagg aaagcagtga agagttttta gctctaaatg      1440
     ctctctatgg aaatttgcca ttttattacc tgtattctaa atattttttt tatttttcaa      1500
     acaaaggaaa gcagtgaaga gtttttagct ctaaatgctc tctatggaaa tttgccattt      1560
     tattacctgt attctaaata tttttttatt tttcaaacaa aggaaagcag tgaagagttt      1620
     ttagctctaa atgctctcta tggaaatttg ccattttatt acctgtattc taaatatttt      1680
     ttttttttca aacaaaggaa agcagtgaag agtttttagc tctaaatgct ctctatggaa      1740
     attttgctat tttttctcac tacaagattt taacatcaat tgagttgaat aatgtaatta      1800
     aatttaagtt ggacaaaatc gataatatat tttattgtcg attatgtttt tgctaaattt      1860
     ccatagagag catttagagc taaaaactct tcactgcttt ccttttttga aaaataaaaa      1920
     atatttagaa tacaggtaat aaaatggcaa atttccatag agagcattta gagctaaaaa      1980
     ctcttcactg ctttccttta tttgaaaaat aaaattttca ggaatggaat catttaggaa      2040
     tgtttacttt atgaaaaata agaaatattt agaatacagg taataaaatg gcaaatttcc      2100
     atagagagca tttagagcta aaactcttca ctgctttcct ttgtttgaaa aataaaaaaa      2160
     tatttagaat acaggtaata aaatggcaaa tttccataga gagcatttag agctaaaaac      2220
     tcttcactgc tttcctttgt ttgaaaaata acaaatattt agaatacagg taataaaatg      2280
     gcaaatttcc atagagagca tttagagctt gaaactcttc actgatttcc tggcttgaga      2340
     aataaagaaa aaatggtttt tgctatttaa tttcattttc ttattttatt taaaaaaggt      2400
     gacaaaatgt aaaaaaatat catagagatt atttagagct taaaactttc ttatggttat      2460
     cttgcttgaa aaatatagtt ttttttctgt tgaattaaat aaaatagaaa agtttcctga      2520
     aatctttata aggttaaact tatgttaact gattttcttt ttataaaatt aaaataattg      2580
     ttagaagatt tagtttttat ttttttaact tgcgtatttg aaattgtttt ttatcttaat      2640
     ttgttgtaca aaacttgtaa ttttgttaaa catttgtttt gtcaagacaa acataaaaat      2700
     agctgtgcaa taattttgtt gtttctaatc ttaattactt accagtacaa taaaaagaat      2760
     ataattttat aaatttgtat aattttatct gaaatttctt tcaaccatcc agacgagagc      2820
     atttaacata aaaactctct atgaacactc tgctatacta gttttcactt cagacgatct      2880
     ctaccaaaca tgcctcatat tacctgtgcc tacgacgcgg tcgctttgtg tttgtcgcaa      2940
     gcagtattta ttataaaaat agtttttatt ttttatttcg gtatctattg aagatagagc      3000
     tttggtgtct tcgagagagt tgttcatttt tggtagttga gcaactttgt cgaaaacaaa      3060
     aatattctat accttgtatc ttagaaaata aatagttttt cttgttttgc acaactaaaa      3120
     tcaatcaaat tgtaatgacg tctgagacaa taatatagaa cctttggtac cagcaacttt      3180
     ctagaacatg tcaactttct aaaacttatc gtttttgaga tatatgcaaa tcaatattat      3240
     ttttccccat acagagctgg ctctgttcgc tgcatacaga gcttagctct gttctaccat      3300
     acagagcagg taaggagttt ttattgagcc tgtagagctc gatgcgtctc tg              3352
//
ID   DNA-4_LMi   repbase;    DNA;    INV; 1068 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1068
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2958-2958 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. TIRs are ~16-bp long. TSDs are
CC   uncertain.
XX
SQ   Sequence 1068 BP; 249 A; 269 C; 277 G; 272 T; 1 other;
     agccgcgtat ccactttccg cggcagccgc atcgaacagt tcgcgcgcgg cacatctgtg        60
     cgtgtttggc gcggcggcct agctcgcggc aggtgttcgc agatgatcgc tggcagtgag       120
     tcactccaca acagttgtcg cttgtggttg gtgtttgtta cctacagtgc catgaatacg       180
     gctcgtgcag cggctgcctt catactgatg tataacatgg aaaacaatag aaagcagaaa       240
     cgaaaagtgc gttggtggat gagagaattg tatcgccaaa gaatgcagta tggaaaccga       300
     ctatcgcaaa tatggcttta gaagtcctgg aagatacaat aaaaaatttt attcgattgt       360
     cgttagacga tttcgaactc ttaaatgcga tgatcgaacc aaaaataaga aaacttaaca       420
     cccactttcg agaggctatt actgcaagag aacgtcttgc aattactttg aggttcttag       480
     ccacaggaga ttcctatgca agcttgcaat accttttccg tgtctccaaa caaaaatatc       540
     aagaatagtg ccggaagttt gtgacgccat cgtcgaggcc ctcaaagaaa gacttcttac       600
     ttctgtagga tgccaataaa gatcatcttc tttttcagtt cctgacttgg aatctaaaat       660
     tttttgactt ggaatcttca ttatactgct tatatgtctc cgtgcgtcct cgsgtatgtt       720
     tttcttgtgg tagtcctcgt ttactggatt ccacaacacc tcttttgctt tgtacagttc       780
     tatcagggcg agacacgtct cgctgtccac ctctgcgcgc gcacgaacag caggactggc       840
     gtctcgactg cgcgagcaga gcagcacccg gccggtgagg gctaagtcct cggttgtgtg       900
     gtagcagagc acgctggagt ccctttgctg cggggcgccg gaccgctcag ctttggttcg       960
     ctgcgcggca cgctcgaccg cggcagcgcg ggccaacgtc gtctccactg cccgcggcac      1020
     agctgcgaac gctgccgcgg gctgctgcgg cgaagtggat acgcggct                   1068
//
ID   DNA-4_PBa   repbase;    DNA;    INV; 607 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-607
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 592-592 (2014).
XX
DR   [2] (Consensus)
XX
CC   >86% identical to consensus. TSDs are uncertain. The terminal
CC   TTAA sequences may be TSDs.
XX
SQ   Sequence 607 BP; 239 A; 63 C; 69 G; 236 T; 0 other;
     ttaaggatat attacactta tttttattta caatgaaaaa attatgaaaa aattatagat        60
     tattctagat cgcatttaaa agtaatacaa aaaattttgc ggcggtttag aacctggatc       120
     aaaaattatt taaatataaa gtagaaatgt gctttaatta attaagaaat aatgacaaaa       180
     atctcaattt ttttatataa gtactttaaa tattcaagat gatttatgta aagtttcatt       240
     gcgatgcaga gattagttgt tctgtaaata aaaattaaat ttttattaag agtacaaaca       300
     aaacgagtgg tggtacatta aatttttatt tacagaacaa ctaatctctg catcgcaatg       360
     aaactttaca taaataatct tgaatactta aagtatttat ataaaaaatt gagatttttg       420
     tcattatttc ttaattacat ttccattaga gcacacttct acttatttat ttaattgatc       480
     caggttctaa accgccgcta aattttttgt attattttta aatgcgattt agaataatct       540
     gtaagttttt cataattttt tcattgtaaa tataaaaatt ataaaaatag gtgtaataca       600
     tccttaa                                                                 607
//
ID   DNA-4_PPo   repbase;    DNA;    INV; 592 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-592
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2728-2728 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 29-bp TIRs. TA TSDs.
XX
SQ   Sequence 592 BP; 152 A; 105 C; 108 G; 227 T; 0 other;
     tataacgccc ggcaaacatc ttgaacaata catttagttg cgcagaagtc gatttttggg        60
     tctttttggc ggggcaaggg gggatgcgcg cgcgcgctct cttgctattg gttaatcagt       120
     cggcctttgc gtcccgcttc tttccccatg ttccgtttac tcccgaatac acttatctcc       180
     aattttgttg gcccaatttc gctgttactt attttcggta ataattgttt ataatttttt       240
     ctattgttgt tattattgag tctcatttgt ttattattgt taagttttat ttgattgtta       300
     ttgttttgac tttttgtgtt gagtatgcca cgaaaaagta acattgttct aaaaagacaa       360
     gccaggaaaa tagtatatga tgtatattgt ttcatgaaac aagaatcatc taaagaaatt       420
     gcacaagctg tttatgcatg tctgtcatgt tcttaaaatt taaaattgaa ttttttcatt       480
     cctaattaat actaatactc aaaataggtc aattattttg tctaaaagtg tacgtgcgcg       540
     aaacttcccc cactacgccg ctttttgttc aagaagtttg ccgggcgtta ta               592
//
ID   DNA-4_RPr   repbase;    DNA;    INV; 1331 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1331
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3218-3218 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 1331 BP; 425 A; 240 C; 243 G; 423 T; 0 other;
     cagggtgatc catttaaaac gcaccaatcg ctaataactt tttaggaaag cggaatttcg        60
     aaaaaaccca cgaagtaaac tatatgtttt ttttggtcta gttttcaaat tttccacccc       120
     cgatgctgta tcttcatttt tggcggagtt acggccaaaa acccgattgg ggtttcataa       180
     ggaccactgg ttttgacaat gattatgaaa actacataaa aaactgtgaa aaatgacgtt       240
     gaccccgttt cgatatccct aatattagtc gagatattta agatcaaagt tacaatttta       300
     tctattcgtg aacggttttc aatattaatt ttccaccaga aatacacgtt ttgggaggtc       360
     ctctgactgc aaaaaatgtt atttgtgacg caaagaacaa aaataataat aattgaagat       420
     tttaaaacat gtagtgtaat gtaatggttg tgggtgaatc aggataaatt tgttttatca       480
     tcaaataaaa gcaaccatca catcatttta atgtaccccg tatgcaagac ttcttgacct       540
     atgattacgg taagaatatc ttgccaggga gggcgggtgt tggtctagtg gtcaagagcg       600
     tggctttgta agtgggagat ccccagttcg aatcccgcgt atgcagtcat tcataatact       660
     taatacatca taatactttt ttaaataaag tgtagtcata cgcgggattc gaactgggga       720
     tctcccactt acaaagccac gctcttgacc actagaccaa caccctggca agatattctt       780
     accgtaatca taggtcaaga agtcttgcat acggggtgca ttaaaatgat gtgatggttg       840
     cttttatttg atgataaaac aaatttatcc tgattcaccc acaaccatta cattacacta       900
     catgttttaa aatcttcaat tattattatt tttgttcttt gcgtcacaaa taacattttt       960
     tgcagtcaga ggacctccca aaacgtgtat ttctggtgga aaattaatat tgaaaaccgt      1020
     tcacgaatag ataaaattgt aactttgatc ttaaatatct cgacaaatat tagggatatc      1080
     gaaacggggt caacgtcatt tttcacagtt ttttatgtag ttttcataat cattgtcaaa      1140
     accagtggtc cttatgaaac cccaatcggg tttttggccg taactccgcc aaaaatgaag      1200
     atacagcatc gggggtggaa aatttgaaaa ctagaccaaa aaaaacatat agtttacttc      1260
     gtgggttttt tcgaaattcc gctttcctaa aaagttatta gcgattggtg cgttttaaat      1320
     ggatcaccct g                                                           1331
//
ID   DNA-5_AAe   repbase;    DNA;    INV; 2824 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2824
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1259-1259 (2011).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. Possibly 4-bp TSDs. TIRs are ~500
CC   bp long and .terminal 150 bp are similar to those of
CC   DNA5-1_AAe.
XX
SQ   Sequence 2824 BP; 895 A; 488 C; 545 G; 895 T; 1 other;
     cacggtgctc ccctgaccgt tattatcaga aaaaaatctc catcaaatct gtgctcacca        60
     gtcgttttct atagctaagc tgcatgtctg ggcaaaattt caaaaaaatc gtagggcccg       120
     ttttgaagtt acgccctttt gattgtataa gtccacaaat tcaaaggaaa tctgagatat       180
     ttaaacgggt tttcattggc cgtgattatc agaagaaata taccatcaaa atttggttca       240
     aaagtaggtg tttttagtta tttgtaacct ctgggcggag ttttgaatga gaagatcgtc       300
     gaaattttga gttacgccct ttttgaagtg taaccattaa aatcaccaat ttcaaataga       360
     ttaattaggc attctaatac cggtaagcat gttcaaatgt tttcaatgac acattgcact       420
     tacatgccgt caaagtcttt cacaattgac tgatttttca taggctcaag cgatataagg       480
     cattacggag ccaatttcat catgtaaccg aattagtttt tcaacaatat tctggatagt       540
     ttggtgaact caggtgcccg attcaaattt ttacatgaat caaatgccac tattggctat       600
     tgtaggtgtt aaatggcttc gaatcaccat tagagaaatt gttcgtcagt ctgtcggttt       660
     ggtgaacaat gaactcacga ttcagattat ttaacatgca attcatgttg tatatcgaag       720
     cgtaagttga cgtcaaagaa tactttcgga cttgagtttt cggttataag tagcagggta       780
     tggaataaaa tgaaattaac gacgtagaaa gcagcgatac aaaatggaaa aaaatgcaaa       840
     gtatagaaca tccgttttta ttttgtttaa tggaatttaa aatcgtagca cttacagagc       900
     ttaattttaa atgtttgtct ttgtcacctt ggaaaagttt gtttagcaaa gtatgattta       960
     ttttcgtttg tcttcactaa ttatagcagc tggtgagtct taacttcaca ggcacagttt      1020
     gcgatcgaaa aaaatgaaag tttacagata aatcttcagt ttgtgtagga ttcaaaccat      1080
     gttatggtag gtagaccagc aggtaaccaa cagggccaca gaacaattta cgattttccg      1140
     gtaacaaaaa ctggaagtta gtcttcttta aattataccc ctctgaattc cattaccccg      1200
     aatatcatga acctgaagac cataacctca gttccagttc ctagaatggc attacttacg      1260
     aattccatta tcacggggca atgtcattca aggtaattat atattcggga caatagcatt      1320
     cagcgtaatg gtgcgttcat ggtgatgaca ttcggggaaa tgaaattcgg ggttatgggg      1380
     tagaatcttc tcaagagagt ttgatttgat attgattttt aaggaagaca tgtgaaatta      1440
     agctctgcaa gtgttatgat ttaaaatcaa tgaatccaaa caatacgaat atttcttact      1500
     tttcttaagc gtatttcaag tattgaggct tctcttcacg agttggcttg agaacgggtc      1560
     gatcgattta tacaattctt tcactattgt attcatccag ggctcttacg tgtttgtgtg      1620
     atcgaaaaga ccgggaaatt gtagatttgt gaaaaatcta aatgtgtaat gtatgataca      1680
     aatgatcaca aaagtattga cagtggtcta gagtgccata gtttggccaa tagtgcatta      1740
     ctcagcaatt gaagtcaagt ctgaacgatt acctgcggaa cagtttttgt ctcaagcatc      1800
     agaaccgstt actaattatg ggccataccg tttcagaaaa tcatagcacg cctagtttcg      1860
     agagtgcttt aaaatgctga attcatttat cagccaattg catgcaagtt tgccagcttg      1920
     taaggcaaaa tgctaatttg aaatttattg tacacataca gtacttatcg acaagtttat      1980
     gactcaagtt attttggtgt tattgtctgc cataaaacga aagctttgta tcggactgca      2040
     aacgatctat tctaaatgtt atgcaatttc aacagattta tatcatgaaa gttgagtcct      2100
     agtatgcttg cacagaagtt tgataaactc acaaacatca attaaccagt tttgtcaact      2160
     ttgcctgtag cttcgtgcgg gcaggacccc aaactattag gcacatatcc tgcaaatgca      2220
     ttactcagca attgaggttt aagttctggg gcagtacaaa gttagccgga acagccgggg      2280
     gcagctagtt gggttataac aatattttat gaataataat aacaatacaa aattggctcc      2340
     gtaatgcctt acagcgcttg agcctatgga aaatcagtca attgtgaaat actttggcgg      2400
     catgtaagtg caatgtgtca ttgaaaacat ttgaacatgc ttaacggtat tagaatgcct      2460
     aattaatcta tttgaaatta gtgttttcaa tggttacacc tcaaaaaggg cgtaactcaa      2520
     aatttcgtcg atcttctcat tcaaaactcc acccagaggt tacaaataac taaaaaaacc      2580
     aactttgaat caaattttga tggtatattt cttctgataa tcacggccaa tgaaaacccg      2640
     ttaaatatct cagatttcct ttgaatttgt ggacttatac aatcaaaagg gcgtaacttc      2700
     aaaacgggcc ctacgatttt tttgaaattt tgcccagaca tgcagcttag ctatagaaaa      2760
     cgactggtga gcacagattt gatggagatt tttttctgat aataacggtc aggggagcac      2820
     cgtg                                                                   2824
//
ID   DNA-5_ACe   repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   03-DEC-2012 (Rel. 19.03, Created)
DT   03-DEC-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposons from Atta cephalotes, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-342
RA   Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 506-506 (2014).
XX
DR   [2] (Consensus)
XX
CC   >813% identical to the consensus.
XX
SQ   Sequence 342 BP; 114 A; 55 C; 53 G; 118 T; 2 other;
     tacactctaa atttcttgca gtgaaatctc actccaagag agtgaaaata caaccaccct        60
     tgaaaaaaag tgaaaatatt tcacttcttg aaaaagagtg acaattttca ctctttttag       120
     aattgaattt tcacttcaaa ggagtgaaat ctcactctcn tttaaagtga gatttcactc       180
     ttttaaagtg aaaattcact ccaagaagtg aagatatatt ttcactttct tttcgaagtg       240
     aantttcact ctcttggagt gagatttcac tgcaagaaat ttagagtggt tatattttca       300
     ctttcttgga gtgagatttc actgcaagaa atttagagtg ta                          342
//
ID   DNA-5_AG    repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative non-autonomous DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-349
RA   Jurka J.;
RT   "Non-autonomous DNA transposons from mosquito.";
RL   Repbase Reports 10(9), 1430-1430 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA tsd. >95% identical to consensus. Likely Mariner/Tc1.
XX
SQ   Sequence 349 BP; 123 A; 62 C; 65 G; 99 T; 0 other;
     tacagtctgt tcccgagtta cacggttctc gacttacgcg gattcggaga tacgcggttt        60
     tctaaatttg acagattaaa tgtcaaatca gtacaatttg cttcaagttc ggtataaatt       120
     gcatttttgc taacaaattg aaaccgctta aaagccagaa atattagaat tttctgcacg       180
     aatcatatca aataaatgat aaagtgtata aaagtactaa attaaatcaa aaactccgag       240
     taatcaatag tattttagtc aaaaaacgtg aaattcgact tacgcggata ttcgagttac       300
     gcggattcgt cgggaacgca gaaaccgcgt aactcgggaa cagactgta                   349
//
ID   DNA-5_BTa   repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-255
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 628-628 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are unknown.
XX
SQ   Sequence 255 BP; 75 A; 50 C; 49 G; 81 T; 0 other;
     tcgacggtga aactaccaaa ccacgtatct cggtttgcga cgtcgcagac ttcctgtcat        60
     actttatttt ttaaatggaa aactactcaa cgtcaattct tgaaaacttc cgtgtttttt       120
     cctctttgtg cggagaaaac tctgtgaaaa tttcaaggaa tgatattgat ttgttctcct       180
     tcaaaaaaat aaaatgggag tggagatttt taaacaccgc aaacgagata cgtggtctgg       240
     tagtttcacc gtcga                                                        255
//
ID   DNA-5_CQ    repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 46-46 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. ~40-bp TIRs. TSDs are possibly TTAA or TAA, but
CC   uncertain.
XX
SQ   Sequence 184 BP; 42 A; 42 C; 47 G; 53 T; 0 other;
     ttaaggctag tatgcagatc ggaaggaaag gggtcaagaa acagctttac gaacagcaga        60
     acaaaggaga gggagcgatt tcttggggct tttcttcacc ctctctgact tgcttgcgct       120
     gccgctgctg cccatttgat ttttttcttg accggttcct tccgaagtgc gtataccgct       180
     ttaa                                                                    184
//
ID   DNA-5_LMi   repbase;    DNA;    INV; 10847 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-10847
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2959-2959 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. Almost entirely a hairpin structure.
CC   TSDs are uncertain.
XX
SQ   Sequence 10847 BP; 3202 A; 2248 C; 2219 G; 3177 T; 1 other;
     gtacacttga cagcaaaaaa agtggatcac tgctgaatgc aacccaacta acgtagctgt        60
     gttgcgggta ctctacacac aaaacccctg tggagtacag tcgttcgact attcacaatg       120
     ggtaccataa gaagcagtag agaacattgc tccttatggc agtcagtcca catgtaattc       180
     aataccgtca tacaaaaaac attagaatac aagttattag agacgagaaa gcaacgtaaa       240
     ttcaatttca ttacaataag tgacaaatcg gataccttat caaactcatt caatgacaca       300
     atgagttttt gttcgtgctc tgaatttgaa cgcactgttg accaaaaaaa gcttgcgttt       360
     ctgatcgaga ctagattagg cataaagaga cgtaaaacat tgacgttttc attggtatcg       420
     gtttacaagg ccaatgtccg aacccagaaa tgtatggtta actttagcat tgcaccagga       480
     attgcatgaa gttcaaattg tttctgagag gtaaccacta aaggtatata atacagtgca       540
     actcacaggt gtcaaacgtc ataaaattgt ggaatagaac gcagtaccta tatgaatcgt       600
     taactaagca cgatcacacg tcagatatta aataaattca cagatagcgc tatatttgaa       660
     cttgaaacga cgatacaatt gacttctttc ccggcaggga ctcaaccccg gctctattcg       720
     ctatttatat atatacgcaa agagatgaaa tagttactgt tctcaccatt agcgggatgt       780
     gcatatgttc ggctagaagt agcgcaagcc gcggcggatt agccgtgcgc actggagcgc       840
     cgtgctgcgg tgcgcgcggc tgttcgccgt cgggggttcg agtcccccct tcgggcatgg       900
     gtgtttgtgt tgtccttagg ttagtttacc ttagtttaag tagtttgtaa gcaacggact       960
     aatgaccaag cagttgagtc cgatagattt acaaacattt tgaagtagcg caataaataa      1020
     cgttgtgctg cctgggactc caaccccgcg cctatcgtca gcgttgacct cagacgacta      1080
     ggtaacaact ctcccaatct cgtttactag taattaggat cgcgccgttc gtagagacct      1140
     ggaggggttt ggcattttga ggaaacaacg aaaactaatc caactttgtt gtagtcagta      1200
     gcgaatggac atgtgtaatg ttgatttgaa acacgccaca gtcctaaatt ctttacttgg      1260
     agctactgga ggtggagagg gggatgtctg cgattgttaa aaactgttac cccagcagga      1320
     atcaaaccat atcttagccg ttacaagcta acatcatccc ggccaactgc cgattttcat      1380
     atgtggtagt ataatgtttt tgtcaaaatg gagtgcagaa cacttcgtac gagaagtaaa      1440
     atagttcgtc ggtatctgtc tacgtaacag taatttcttg gccgcgctgt ctgaggcatc      1500
     ttgtcgcgga gttgcggccg ctcccgccag aggttcgact ccttcctcgg gcatgggtag      1560
     ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt cgtccttagc gtaatttaat      1620
     taaagtagca tgtaaggcta ggtagggact gatgacctca gctgtttggt ccattaggac      1680
     tacaacaaaa aaattatata cggtatgtag aattatgtaa caatgcgtat gccagtataa      1740
     tacgtttcag catgctcctt ggtgattttg tatggcatga tctatatgct tatttaacta      1800
     tgctctcatt ttgctcaagt ttgtagaaaa aatgtgtatg aaatctaata ggacttaact      1860
     gctaaggtta tcagtcccta agcttacaca ctacttaaac tatcttaatc taaggacaac      1920
     gcacacaccc atgcccgagg gaggactcga accaccaacg cgagcagcag cccgatccac      1980
     gacatgatgc cttagaccgc gcagctactc tgcgcggcgc tcaagtttgt agcatagctc      2040
     ttaccataat aaatggaata ttacacatct taaaggttgc gaggagcgtc gtttacgcat      2100
     tagaaaacag attctaaaac ggcgaaatgt ataccatttg taacagttgg aatgaaagca      2160
     gaggaggtca atcgaaacac cagtgctctg tatttcacag aacgaagaat ggattatagg      2220
     caaggagata tgaaagaaca cggtctcata gagaggactg gtagacagta acgaaaccat      2280
     aaattaaaag agaaggtatg cttcaacaga aaccaataga tttgatcata gcgttttgag      2340
     ggaacagacc aaaagggaat ctgtggttat tatgtaagag aggcgacagg gagtgagaga      2400
     gagaacagaa gagaacaatg aataaataaa agacaaatcg tttgcttatt ttgtgaacag      2460
     tggagggtgt attaatggat ggaagggagg agagagacgt atttgaaata acaaaaacta      2520
     ctttgacagc gtccatctaa actgattact ctgtatgcat ggaggctggg tataagtgaa      2580
     acgataaaaa taggatattg agtgaaagga gaagcattga attaaaactt gtgccacggg      2640
     cgggaatcga acccagactt ccatacttac tttaattcaa tactgttcct ttcactcaat      2700
     gtctttcaca tattgacacg gaaaactgtc tctaggtata taaatttata ataaaaatag      2760
     gataataagg gaactgtata tttaaaaaaa acttcaatat aaaggtagct caaaggaaaa      2820
     aaaaaaccta ttttatttca gttgccaaga gatcttccat agtctcttac ttacgaaata      2880
     tgacaacaga gacgagatta aaaaagaaaa aaacatttta aggactaata atttattcag      2940
     aatccctcat tatttgtttc ttccgtaatg catctcagca tataacctat aacgcaatcg      3000
     gaccagcttc tcttcagtaa aagcgacgac tctatctcga gttggttgct cgcagtgaga      3060
     cggcctgatt tgtatttctg ctttccgctc ttactatgat gccaggaagt aaacattctg      3120
     tatttacgtc agagccccgc tttgcgccgt gctgggggct gttggccgcc accgcgaccg      3180
     ccagctggct ggtttccgcc aagcctcgcc tcggcaccag ctgtggttga ccggccagcc      3240
     cgtagctcgc aagccacggc taatacaggc cccggtcgca aagccaggct caacccttga      3300
     agtatcacaa gtttctgcaa acctacccta atgtgtagta gaaactacca cagctagagc      3360
     tattttgcta taaaatgagc agccacgtta tcttttgaca cttcattcaa atatttaacg      3420
     aagttaaaga atagaatcat gataaacgta gctaccacat aatgtttcac ctagatagca      3480
     atcttacgac acaggaaact atctttcttt tcagcgttct gcattagatc tagacataag      3540
     aaaatatgta ttcaacctag aaaactacgc atattgtaaa attaaacagt tctgatatca      3600
     acaacacaaa tgtatatatg tagtatatca ttgacgtttt gtgcacttat aaagtgttct      3660
     caatgtctct gaaacaataa gtgctacaca acggaaatta ccttctgctg gggcccttca      3720
     tttacacgat tgttctgtta ttcacagtga agtgtttcgt aatgtgttca aagaatcgct      3780
     tcagtttctc gactgttcca cgcttatacg aagctcgaaa taataataac atacaattgc      3840
     caaatagcgt atatgcgagt tataatctca tatattcttt caactttttc gacgtcctcc      3900
     ctctatcccg tcaggtaata atcgcacact gctcagcaat actgcataac aggtggagca      3960
     attgtagggt tggcagtctc cttaggagac gcttaaatct tctaatggtt gtgtcaataa      4020
     cagacccttt gtttcacctt cgccgtaaca tgtgttattc acagttaaca ttctttctaa      4080
     ttgcaccccc aagaatttcg ttatatgtgt aaccttcaaa tttgttttgc ttatcgatat      4140
     ctagaatact gacgaaactc tttgagtaat catgttcaga gccaaatgca tattgatgtt      4200
     taaggtcaat tgtcgccata tgcgccgtga agatacaaat tcaaaatcat ttcgcaattg      4260
     atttgctttt ctgagtttag tagtcggcag cattaactgc ctcaaatcta agagcaatgt      4320
     tctgattgct cattaaatat ttcgaatata tattcgaaac aggagaagtc tacttcactt      4380
     tgctggaaga attacactcg ccacgtcctt ttcactagat gactcctcgt cagttagtgc      4440
     aaactattac cttgcagaca ggacatcacg atcccagtcg cacaactgtg actatactcc      4500
     ttaggaaagc gatatggttc gaagttgatt atggctgaag ataccaaaaa tcgttttggc      4560
     actctataaa tacggaatga gtttgagagt actcagtagt tcatgcaaat atagtatcat      4620
     aagtctcaca aggtgttgga ccactcgaga aagacattgc ctgtagaaaa atgatcttcc      4680
     tggtacgact atggtagtga aatgacaaca tggtggatca tgtctggtga tagttgtact      4740
     gcttcctgga atgacagaga agaatctaga ttaaaagaaa taatccgaca caagctgctt      4800
     gtggccactg agtgcgcgca ttggggaagc tgaacagttg tgcccagccg gaattcgggc      4860
     ccattcctac tgctctctga gcagttacgg taaccactgc gcgagcgaga aaacaacgat      4920
     catcgcaggt gcgcgggcta cccccccccc ctttcccccc tcgtcaccct caagactcaa      4980
     acttcctcac actacttacg tagttgccgt ttccaatttg cactcactgc tcgtggcact      5040
     ttgccgatta cctcaagagt tcaggcgtag tgtgcatttg cactgaaggc tggatctgtt      5100
     gtcgtcttct ccttaattat gtatgtttat gtggtgtctg ttctttcgaa agaacggtca      5160
     ccacacttat atgtatatag aagaaacttt caagattcac ttattggtgg tattccagtt      5220
     aaaatgtctg aaaattgaac ttcggtgtgt catttactta tcacatttat gattacagac      5280
     aagggtgatg aatttcacgt aggaactaca actattctcg gtccctactt tctgaattat      5340
     ctgcatcagc cttcacaagg gcaatgagga ggcgattcac gctgcagctg ttcgcttcct      5400
     acatgaaaat gttcaaatgt ttgttaagct taagggactt aactgcgggg tcatcagcgc      5460
     ctcaatgcgc ttggccactc cgccgcggcc acatgaaaat gtcgacgctc tctaaagatt      5520
     aagaggcagc agctctcaat tagaaactgg agcgagagta acattttacc cactctctga      5580
     cagagctaca aacttctata tcgaactgag aaatatttga ggcagattat gctgctgtct      5640
     agaaaacacc tcagaaaagc aaagccaatt ttaaaatgat attgaagtta tatcttcacg      5700
     gtgcaaattg cgacaattga ccctaaacat aaatatgtgt atagttcacc acatgattac      5760
     cagaaaattt tcgtcaggcc ttgagaaatc gataaacaaa acaaatttaa ggattataca      5820
     tctaacgaaa tttctggtgg gtacaattga aaacaacgtt aaccgggaaa aatacatgtt      5880
     ttggcgaaga taaaacaagc ggtctgttat tgacacgacc attaaaagat taaaacctct      5940
     cccaaggaga ctgccaaccc tacaattgct ccacctcttc cgcagtattg ctgagcagtg      6000
     tgcgattact acctgacggg atagagggag gacgttgaaa aagttgaaaa aagatatcag      6060
     attgtgcggt atagtgaatt agcggaaaga aggtctcgga tgttttccgt tttttattta      6120
     ggttgggtag ggggcggaga gggcaggggg ataaggtggg gacgcaatat taaaacaaaa      6180
     gcgtgttcag tgtagcacgc ttcttccttg agatttcaat caccaacctt ctcctacgaa      6240
     tgcaaagagc ttttgtgctc attaccgtac caagtatggt gttacaattg taagaaggcc      6300
     gcgcagagta gccgcgcggt ctaaggcgcc atgtcatgga tcgggttgct gctcgcgtag      6360
     gaggttcgag tcctccctcg ggcatgggta tgtgtgtgtt gtccttagaa taagttagtt      6420
     taagtactgt gtaagcttag ggactgttga gcttagcatt taagtcccat aagatttcac      6480
     acacattcga acatttgatt tgaattttaa gaataacata atggtaattc taactcgcac      6540
     atatcctttt tggtacttgt ttttctcgat cttcgtataa gcgtggaaca gacgagaaac      6600
     tgaagcgatt ctatgaaccc atgacgaaac acttcactgt gaataacaga acaatcgtgt      6660
     aaatgaaggg ccccagcaga aggtaatttc cgttgtgtag cacttattgt ttcagagaca      6720
     ttgagaacac tttataagtg cacaaaacgt caatgatata ctacatatat acatttgtgt      6780
     tgttgacacc agaactgttt aattttacaa catgcgtagt tttctaggtt gaatacatat      6840
     tttcttatgt ctagatctaa tgcagagcgc tgaaaagaaa gatagtttcc tgtgtcgtat      6900
     gattgctatc taggtgaaac attatgtggt agctacgttt atcatgattc tattctttaa      6960
     cttcgttaaa tatttgaatg aagtgtcaaa agataacgtg gmtgctcatt ttatagcaaa      7020
     atagctctag ctgtggtagt ttctactaca cattagggta ggtttgcaga aacttgtgat      7080
     acttcaaggg ttgagcctgg ctttgcgacc ggggcctgta ttagccgtgg cttgcgagct      7140
     acgggctggc cggtcaacca cagctggtgc cgaggcgagg cttggcggaa accagccagc      7200
     tggcggtcgc ggtggcggcc aacagccccc agcacggcgc aaagcggggc tctgacgtaa      7260
     atacagaatg tttacttcct ggcatcatag taagagcgga aagcagaaat acaaatcagg      7320
     ccgtctcact gcgagcaacc aactcgagat agagtcgtcg cttttactga agagaagctg      7380
     gtccgattgc gttataggtt atatgctgag atgcattacg gaagaaacaa ataatgaggg      7440
     attctgaata aattattagt ccttaaaatg tttttttttt cttttttaat ctcgtctctg      7500
     ttgtcatatt tcgtaagtaa gagactatgg aagatctctt ggcaactgaa ataaaataga      7560
     ggtttttttc ctttgagcta cctttatatt gaagtttttt taaatataca gttcccttat      7620
     tatcctattt ttattataaa tttatatacc tagagacagt tttccgtgtc aatatgtgaa      7680
     agacattgag tgaaaggaac agtattgaat taaagtaagt atggaagtct gggttcgatt      7740
     cccgcccgtg gctcaaattt taattcaatg cttctcattt cactcaatat cctattttta      7800
     tttcatttat acccagcctc catgcataca gagtaatcag tttagatgga cgctgttaaa      7860
     gtaatttttg ttatttcaaa tacgtctctc tcctcccctc catccattaa tacaccctcc      7920
     gtccttcaca aaatatgcaa acgatttgtc ttgcatttat tcgttgttaa tttctcctcc      7980
     attctctctc tctctctctc tctctctgtc acctccctta cattataacc tcagttgccc      8040
     ttttggtcta ttcccccaaa acgctgtaaa aaattagtgg tttccgttaa aacaatactg      8100
     tctcttttaa tgtctgcttc ctttactgtc catcggtcct ctctatgaag cagtgttctt      8160
     ttatatctcc gataatccat ccttcgttct gtaaaacatt cgttcctttt ctctcggccc      8220
     taaaacaaac tgtgatatat gtctaagtaa ggagtacttt gcaagcattt cactctttta      8280
     ttttcagttc tgcactcctg ttcattccta gatcccgccc tccctcctgc tacccctccc      8340
     ttgacatatt tatctgcatc tacgtgcttc ttttcacaat tttgtgcttg gagctttttt      8400
     ttttaaaatc actgtcgtta tttctctgcc gctgactctc gaaaagcacg tggatataat      8460
     ggacaactga accttaccgt gcaagtactg atatatccat tgaaatggac atctattccg      8520
     acaaatccca gtatccaacc tttgaaatgg cagacactga agttctcccc catccttccc      8580
     agttggatat tatgcttcgc atgtaatcgc attttcgatg cgacattgta tcagaatcca      8640
     cattgctgtt ttttaacctc aatatgacta ttgaaggcaa ccacaccgtg aagaataatt      8700
     gctcgacaca cttgccagtt atcggatacc ttgtcattga ccgtactagt aaatcacaga      8760
     aacctccttc atcgaagtct gtttgtgttc ctgaacgtgg tgaataatag atgtcaaaac      8820
     gaagttactt tcccaatttc agaatccttt ttctaatgca taatcgacgc tcctcataac      8880
     tttaaaaatg cgtaatattc aagttatcgt ggcaacagct acccaacaat cttgattaaa      8940
     atgagcccat agttaaataa gcttatagca aaatgccata ccaaatcgta atgtagcata      9000
     ctaaaacgta gtataatatc atgaaaaatc cgcgataagg cgcctcagac tacgtggcca      9060
     tccctgcggc caagaatgtc ttacctagcc agacaccttt gagctctttg actggtcgta      9120
     ccgtctaatg agtactccat tatgacaaaa cattatgcta acacatctgt aattcgctgg      9180
     aggccggggt gaggttaact tgtaatggct aaggcatggg tccgattccc gctgggggta      9240
     acagttttta acggccacaa aaataccatc tgcacctcca gtaacgccaa gtaaagaacg      9300
     caggactctg ccttgtttca aatcaacatt gcacatgtcc atgcgctact aagttaaaca      9360
     aagttttcgc aaaataccaa acccctccac gtctctacga acggtgtgat cctaactagt      9420
     agtgaacgac aatgtgatag ttgacgcctc atcgtgtaag gtcaagagtg acggtatgtg      9480
     cggggttgga gtccccggaa gaaacaataa atatatcagc agtattcctt cctatcatac      9540
     aatagcaaat ggtgccgggt tcgagtccct gccggaaaaa attaattgta tcgtcgtttc      9600
     aggtactagt ataacgctat ttgtgaacat atttaatatc tgacatctga ttgtgcttag      9660
     ttaacaaatc atcaatatac tgcattctat tccacaactt tatgatgtat gacatctgtg      9720
     aattgcacta tattatctat ttcagcggtt acctctcagc aacaatatga acttctgaat      9780
     ctgggcatgc aaattatatt tatttctggg ttcagatatc ggtcttggaa accgatacta      9840
     atgaaaacgt cagtgtttta cgtctattta tgcctagaga tcacgcactt aaacgttgcc      9900
     cctgagcgga gaatgttggg agctgaagct tgcattcagc tgtagcgcat tggctgttag      9960
     aacaagtccc gcctctttct cccagtgccg ccagcttacg gcgtatagat tacaggtttt     10020
     aaaagaaaca acatgcaagg ggttaaggcg tcagaaatgg aacacgaaat taagtatcac     10080
     tttaatgttt gagtaataga aaactggaac gtatatctac gaaatattaa tattttaaag     10140
     gggcttatta agcgggtgta gcaacgcttt ctgcctcttt ttattgtcgt aactgaataa     10200
     caatcagaat taacattctt cataccactt ttttctaaaa gaagtcgtca gggtatgtgg     10260
     acttatttta gcaaataaca aagtggaaga caataatcga aaccaagcac aaatcaacaa     10320
     tacattgacg aggtctactg tgtacaatgc tgttacgagg taaggttggt agagagcata     10380
     aacattctgt agacacacga actcagctga cttctgccga tcagagaggg gccacgaaaa     10440
     agtgcgtgac ctgtaaacgc atctcgatca ggcacacaac tgttgtttgc ttaacagtgc     10500
     gttcagattc agatcgcgaa caaaaacata tagtcattaa acaagtgtga taacgtatct     10560
     gacttttcac ttattgcaac gaaatttaat ttacaagtgt tactgtctca tctctaatga     10620
     cgtgtattct aatatttgtt gtacgaaagt attggtttgc accttgcctg aatgccataa     10680
     ggagaaatag gagacttact tagtacctat tgtgcgtagg taataactgt actgtggaat     10740
     gatttgacga cctgtgacac agctacgcca tgttggttgc atagcgtcag gtgcggcctc     10800
     cactttggaa ttcaggggtg atccactttt tttgctgtca agtgtac                   10847
//
ID   DNA-5_PBa   repbase;    DNA;    INV; 746 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-746
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 593-593 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus. Likely TA TSDs included.
XX
SQ   Sequence 746 BP; 292 A; 86 C; 96 G; 272 T; 0 other;
     tacacagaga gaaagatttc ttcattttat attcctattt gtttgactta tatttgtttg        60
     attcaaacaa atataatttt atatgaaaca tttatatttt tgaatgaaga tattgcatta       120
     aatcatatta tttgatagaa aaaaatacga ttgtttgaaa caattttttt cgatgaaata       180
     atatgttctt tgattatact aaatattatt caatgaaata aaacattaac tcgcaagcaa       240
     tatgcggcat cgccgccaga tggacgcggc ggagttctat ttctcgtaaa taaaaaccat       300
     acaggataga ataaaaaaac gcagtattat gagaccattt caatcatttc tagtgaaatg       360
     gttttttgaa ggtgaattcc caaaatggga attgcaccca aatggagtct ctcaaaatga       420
     aaagtccaag ataaaataaa ttaaatatta ttttgacaat acaattatta agatgaaaca       480
     aaaaaatgtc tttatagaaa tttcaatatt tttattgaaa taatgaaatt gtttgaataa       540
     tataataaaa ttgtttaagt taaaagcgag atcaattttt tccaaaaaaa atgttttctt       600
     tcatgtaaaa atatttatta tttgaaaagt caaacaattg tattttttag ctcaaacaat       660
     gattcgattg gactattcca acgaataaat ttctttggat tttcagcaaa tttattaaat       720
     ctaagaaaca tttttctttc tgtgta                                            746
//
ID   DNA-5_PPo   repbase;    DNA;    INV; 1622 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1622
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2729-2729 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~45-bp TIRs. 4-9bp TSDs.
XX
SQ   Sequence 1622 BP; 515 A; 299 C; 263 G; 544 T; 1 other;
     ttagggatgt tgcgaatatt cgcatccgca tccgcaaatg cggatcttcc gcatagattt        60
     ggacatctgc atctgcatcc gcatccgcat taatcagtgc ggatgttcat gcggatgcga       120
     atatcatgca agtagccggg cagtgttcct agcgaacaaa tatttagtag cccgggttta       180
     atttatgaac ctctgcgtaa tcgccctgaa ccagaaaagg caccaatact cctgttcatt       240
     aagtataatg ctcctatttt taattttaat tactaattta ccaataggtg tttaacatac       300
     agggttattg gtaattagac gtatcatttg taataatttt gacccctata tgcaataacc       360
     aaaagttaac cgttttcgag taatcttgat ctttcgattt tttcaaaata agtcgaaatt       420
     gcaacttcaa aaatttattt aaaaataaac tatccatgaa aacttaattt tttcttagtc       480
     ttagtcttag gaacttagtc tgcagatttt tttaaaaaca tgcccgtttc cttagctctc       540
     caaaaaatgc ataataacca ggaacttgtc ctcactgtaa taaacacatg atttcaaagg       600
     aatcgggcgg tattcgtact cgaactaatg ttggttttga aaactcccat aaaagtattt       660
     aaaaaccata acaaacgtaa aataaaccaa aaatacaagt ttaaataaat tgaattaatg       720
     aaattaacaa tgaatattaa agtaacaatt aagatatttt gaagtttccc ctcggccatc       780
     caataataag gaaaatcgca gctatcacct attctattct attttctgtt tatggctctc       840
     cctcagcgga ttgggcaaca gctatcacct aacattacca ccaaaatgtg aaggtcatcc       900
     gtccttcttg tatgtcatgc tttgtcctgt tgccaaaggt gggttttcga agagattgtt       960
     ttaatgacag ttatttatta aacttactgg ttctaaattt tattttgaat ttgtgttttt      1020
     ggtttatttg tcgtttggca ttgtttttaa ttacttttat gggagttttc aaaatctacc      1080
     gtaactttag ttcgagtacg aataccaccc gattcctttg aaatcatgtg tttatttcag      1140
     tgacctgggg acaagttcct ggttattatg catttttgga gagcttagga aacgggcatg      1200
     tttttaaaaa aatctgcaga ctaagttcca taatgatttt tttcgttttt aaggcatttc      1260
     agtggatgag aatctcgaaa aatattgaat aattaattac tatattatat aattactcga      1320
     aaacggttaa cttttsgata atgcatatag gggtcaaaat tatcacaaat gatcccctct      1380
     attacctcct aacgggaata cgtctaatta ccaataaccc tgtatactaa tgtttgatta      1440
     attacaataa aaatataaat attaataata aaggctgaaa tgatgatgat gatgatgacg      1500
     gtttacatat tatcttaaca tccgcatccg catccgcatc cgcggatgtg agccctcaaa      1560
     actccgcatc cgcattcgca tccgcggatg tgaaaaaatc aacatccgca acatccctgg      1620
     tc                                                                     1622
//
ID   DNA-6_AAe   repbase;    DNA;    INV; 2094 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2094
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1260-1260 (2011).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 8-13 bp TSDs. TIRs are ~130 bp
CC   long.
XX
SQ   Sequence 2094 BP; 615 A; 424 C; 394 G; 661 T; 0 other;
     gggaccctaa cgaaaggcgg aaacacgaaa ggcggaatca caaaaggcgg aaactcaaaa        60
     ggcagactaa cttagacgtg taacaaaagg cggaaaataa cataaggcat aatctaaaaa       120
     ggcggaatcg ttcaaaaacg atttcaaaat gcttacttta gcttccaaac gataattaga       180
     ctgagctgtt taggttccta ttcatatcag cgttttcaaa atcactaagc ggacttagaa       240
     tttcttttga aaaacggtgt tttttgtttt tcaatttata tgtaggtatt ggccaataat       300
     acatgacagg taaataccgt ccaatgccct ccattacgct gcggtgccac tataaccgag       360
     aaatatcttc ccgcaccagg ttgatgttag gtgaaataac cgtcgcctgt ttctatttct       420
     tttatttatt gtcgcctgtt tcagccttag gtttgcgcta aattttcgat aaatctagcc       480
     aattttgttg ctttttcttc tgtggcacta cgcccccact gagacacagt ctgcttctca       540
     gcttagagtt caatgagcac ttccaccgtt attaactgag agctttcttt gtcaaagttg       600
     tcattttcgc attcttatat cgtgtaattc tacgtcacta gcccgaaaga cacttgctcg       660
     aaagtaacat tagcccgaat gatggacata gtctattctt tgaaaaagaa atatctaata       720
     cattatcagt gatttgtcct tcttttaatc atcggctatt ctttctggac ttatcacctt       780
     gaatatgttt ggcgccacga gccactaaag agccagttga aattgattct tctttgaaac       840
     atatactgtt ttttcgccta atattgctgc tagtggtatt caagctgctc atattcgcgt       900
     taatgttatg gcacagaaaa acagacgtaa cagctagaac aattacccat ttgaaacttt       960
     gtctcgcaaa cgttactgtc taatgctgaa aatgctgtgc ttggcaaacc gagaatcagg      1020
     tggcagtagt gcgcaaaagc gatacgagcg ctaagactgg ccaatcggcc aaccataaaa      1080
     tattagaatt gtgcacaatt ttgctgtacg atgcacataa ttcgagtgtt ccgtctgttt      1140
     gtcagtggtt atagaatcct cgcattccaa aatgcttcat agaagtgcct ttgtagttat      1200
     ttttcccaat acggtgctat aatagattta ctacaaactc cgtaattcgg accatcgcat      1260
     tggctcatgg aaacatcgag tcatggaaca gaaatgcttt ggagagttgc acagaataca      1320
     aaactattaa gtcatattct ttactagtgt gaaaatcaaa tttgatttgt gaacatgtga      1380
     catcattcct atcgtagcat taccacccgg acaactagat cattttttac aaatttgttc      1440
     gaggtggata ggaatgacct agggaaacag ttatgttatg ttatgttatg taacagttat      1500
     ggccatagtg gttccctatt tggccatatg ataaatttcg aaatcattca catttggaat      1560
     ctttttgaat ggtttaccgt gacggcatat ttaatacctc acaactgaga cacaaaaaat      1620
     aattcaaaat ttgaaaacaa tttaattaac acgtatagcg aaatagggaa ccattacgtc      1680
     catcactggt acacctaccc tatatcacct ttttaatatt gtacaccgta aaaaactgtt      1740
     tgaggggacc atcatattaa ccatgaaatt taggttttgg ttttagtatg atatcatgag      1800
     tcgttataga gtcatggaac atcgactcat ggaggtttca ctgtaaaagc aaaccgcaga      1860
     atcacataag gctaatttaa atttggcgga ctttttgaac cagcagagca aacggccggc      1920
     cggctggttc aaaaagtccg ccaatttaaa ttagccttat gtgattccgc ctttcgtgtt      1980
     tctgcctttc gtgattccgc cttttgtgcg tagtcgcctt ttgttagttc tgcctttcga      2040
     aattccgcct tatgtgtttc cgcctttcgt gtttctgcct aacgtaggac accc            2094
//
ID   DNA-6_PPo   repbase;    DNA;    INV; 644 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-6_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-644
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2730-2730 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 19-bp TIRs.
XX
SQ   Sequence 644 BP; 234 A; 96 C; 94 G; 219 T; 1 other;
     caatagggaa tatgcatgta tttttttttc tttttttaaa cgattctact tgttataaaa        60
     taaccasaaa aaaaattgac gcgaaaatat tcaaccattg agctaaaaat aataaaataa       120
     aattacgacc attttcgagc gactaaaacg cgaccggagt tgtcatgaga cgattgacgt       180
     caatcgtcta ttccattcat aacatacgct cagatgtcac ttcgacgtaa aacacaacaa       240
     agtttctcaa ggtcaaaaag tcaaaaatcg attcattttt attattcctg gtacaaataa       300
     gtggtaatta ataattctat tcattaattt tttattttaa agttggtttt gatatcgtgt       360
     ttacagtaaa atacttcaag agtgtatttc tatataaact aacgtaaatg aactgtgtat       420
     tgtcaacaca gcgacgccat attagataag ccacttgctt cgaccaatag tgtgcgtttt       480
     agaacttagc gagggaattt gaaaaaagac actttttaat gattaaattt tgccactaaa       540
     tcacattata tttaaaaaaa tctttgcagg aatgttttta tagtaataaa gtatacttaa       600
     aaaaagtttg gtacaatttg gcgtcatatg catattgcct attg                        644
//
ID   DNA-6_RPr   repbase;    DNA;    INV; 731 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-731
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3219-3219 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 731 BP; 284 A; 99 C; 84 G; 264 T; 0 other;
     tggaccgttt attttgaaag tggtgtaagt ccattttctg ttatttcgag aaaattaaag        60
     gttaacatat ctgttaatta taaaatttag acaaattata tgaagtctgg caatgtttct       120
     actgttttat caatatgtaa tttggttata taaatttgtt ttaggcgtat tttactaaac       180
     tgatgtatac ttacgggctg caaatggact tacaccactt tcaaaattag acaattgtaa       240
     aaatcgttta atttcaattt tgaaaaatca aataatatat attttcaaat aataatatac       300
     taatatataa taatatttca tgttaataaa taataatata cttcatatta atccaatttt       360
     gtttacaaat aataatgaca cgacataaaa tagaagtaat atttttaatt ttagacgcta       420
     attacattgt taaaattaca agatattgat agtatttaat ataaaacaaa tgtaaaataa       480
     caggctactg atcggcaacc atctgctaag ccgcctacct ctgtcaattg gacttacacc       540
     actttcataa tcgatgatta tgcaatttca tttaccgacc aattttaaat tctacaaaac       600
     atgggaattt tttaagaaat taaacacgga ctagttatac ataaaaaatt aacataaaat       660
     taagcatgaa ttacgtgata tctcattttt ttcaaaaatg gacttacacc actttcaaaa       720
     taaacggtcc a                                                            731
//
ID   DNA-7_AAe   repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-432
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1261-1261 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 10-14 bp TIRs. Terminal 4 bp can
CC   be
CC   TSDs.
XX
SQ   Sequence 432 BP; 149 A; 75 C; 76 G; 131 T; 1 other;
     aattgggtcc taaaattttt aatgaaatct tgtttttatt caataacacg aaagagcatc        60
     ttactgcaac tactttagca atttttcccg ctcaaataac ggctatatca tgtttaaact       120
     ttaatttaaa aattgggtcc ataaatgaac cttgacactt aagatcatgt ttgacgttcg       180
     cttagtcgac aaaaacacca caggggtttt agttcgacca ctggggttgt tcctatctga       240
     catttcgtaa gggacacgga aaacaaaata cacccaaaat ttgagtttaa gccaaaggat       300
     gtgacaaaat ctaaaaaaaa gttttttggg cttaaaccaa cggaaaacat tagaaaattg       360
     agtaaacatg tgtttttggc ctaaacttaa gcgtttggca ctaaaattgg gacagggctt       420
     taggacccwa tt                                                           432
//
ID   DNA-7_LMi   repbase;    DNA;    INV; 15241 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-15241
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2960-2960 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.  TSDs are uncertain. End sequences
CC   are similar to those of DNA-5_LMi. It contains a CDS for Mariner
CC   Tpase, but this protein remains to be confirmed the real Tpase
CC   for this long DNA transposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           3670..4683
FT                 /product="DNA-7_LMi_1p"
FT                 /translation="MPQLKSFDKGRILALYEEGYSISAISRALGYSKSTIH
FT                 LWVKRMADEGHVNSRRRPGRPRTTTKEQDNDILRCSDEDPFRTSTEIRNVL
FT                 QLPVSRSTIRRRLNEEGRYGRKSAIKEMLTEQHKTARLNFALAYVSKPISF
FT                 WEQVIFTDEKVFSTAPNGSVHVFRPTGARFDRKYVHQRQRCGRTAVTVWGW
FT                 MSANGCGILWELDRPLTSSYYCEILDNIMLPSVRETFPEGRIIFQHDRSPV
FT                 HTANCVKQWFRVNGDVDMLDWPPKGADLNPIEHVWAEMEKIIRSRRPAPAT
FT                 KAALSEAVQDAWEELSQNNGFVRKLVTSVPRRLSAVVEENGNWTRY"
XX
SQ   Sequence 15241 BP; 4645 A; 2977 C; 3051 G; 4562 T; 6 other;
     tgtactacca tgcgcaaaaa tatccgaacg acctgaattg cgtttcgcct gatgtgcatg        60
     caacccaact aacgtacgtg tcttgcgggt gctctgatcg ctccgcggta tagtcgttcg       120
     actattcaaa atggatccac tacagacaac tgctctttat ggcaatcatt ccagatgtaa       180
     attaacacca cgattttgca aataaaagga aacacgttat taagttctta acgtttatta       240
     aatccaattt attacaatga catatcttaa gtattatcac acttattaca gtctgatata       300
     acaaactccg tcacataaaa cattaattaa tccttaaaca acatttaata ttgttacaaa       360
     caacagattt tactatagta tcggaaatcc taaagtcctg tagaaattcg aagtactttt       420
     gttctctaaa tcgttttctc acaattgcga aacgtcgttc cactggcgag cggattttta       480
     ttaaccgatt gttgaactaa ccagataata aaaactcaat taacagcagc aaacgcacta       540
     tggaaacttc aatattaact gcgtatcacc aacattttct ccgtattcat acctgaacaa       600
     atatttgtac acatctttga acttgaattg atatgacaaa ctaccttgtt ctggaatcaa       660
     accaaccacc tgtagccgta gctaaccaag caatgcattc atgtcttata gatacttgat       720
     tatgcctaag attgtcacag ctgacgaagc ataaagatgt gtgaaatatt ggagatttcc       780
     tcacaaatat cagaacgcgc aaatcaaatc atataaaatg ccaattctta aaatattttt       840
     atttatttat ttatttttta ctgaaccagg aacttaataa tcaccgttat gtccctaatc       900
     acaagtgccc agactcagtt ctgtgtggga cttacatacg aggctgctcc tgtcggaggt       960
     tcgagtcctt cctcggtcag gggtgtgtgt gttgtcctta gattagttta agtagttcta      1020
     agcctaggga ctgatgacca cagtagtttg gtcccataga tttacaaaca tttgattttg      1080
     agttacatac ccggtatcta aatggaagat aactaagtga agtcagatgt tagtagtcga      1140
     attatttcac cagcagcggg atgtttgaat ctgtaatcag gatataatta cgttatgcgt      1200
     caccgggaat cgaaccccga acctaccgat gtcctttcta agcacgaatg gacgttaaat      1260
     ctcaaatgtt aactcaacag gaatgacgat gcgtgcgtgt ctgactagta acaacggcac      1320
     ctatcgttgt ataataataa taataatttc gtgtggctca gtgtcctggt gcaagtcatt      1380
     caactgtgcg ccacttcaga gacttgcatg tccctaacct gccccaatta tccaaccggg      1440
     aaaggcgacc tacagtttaa cgtggaatcc aaaccacgtg tagtttatga cgactcctca      1500
     cattgttgag acgtgaatgc tgggttaaaa cacagattga aaaaaaatcg gtgatctgac      1560
     taggtttcga acccgcgacc cttcagttac cattcaagcg ctttacccca agaccacctc      1620
     aacaccatgg ttcgcgttga taatgcacga agagacattc aaaataattt tttactagta      1680
     gtccagtgtg ctctatctag ggcgtcaaat gaaattatga atattttgtg ctggacctgg      1740
     attcgaatcc atatacgtgc ctttcgtgga gacctagagg agtcggcagt ctcggagaaa      1800
     gcaacgaaat gattcaacta tatgattccg agagggtcga gtgcggcaaa agaggagatc      1860
     cgaattagaa tcccagtcca gcaccataat ttttaacgtc tcaagttaaa attcaatacg      1920
     agacacgtga ccttaaagga ccattggttt ataaaataaa ataaagtttt gtaatataag      1980
     aaaagctttc tagcgacaga gttactgatt gccgtgtatt ctgcctgtta ctggcaacga      2040
     taaatcggct ctgtccgagt tgatagcgaa ataattcggt ttaatacgga ttgttaacta      2100
     cggtgcaact tgacgttctt cacttggtgt taccagaggt gaagtagaca tgatcgtgcc      2160
     agttaaaaat atacacatgt cagaccctct ccttgtcagt cgcgtcagct gaagcagtat      2220
     gatgtagtga agactgttaa cctctgctct ttcttaccgg gaaatacggc attggattat      2280
     ttggctccat aacaacacta caacacttat tgcgcgtgta tgcaatgcat atggattcga      2340
     gaatttactt gtactgtggc ttacatttct gtatatgctt gacctaaact gcaacttcat      2400
     tgtttgtttt acttgatttt tgtactcact gaaataaaat tgcctgacct tccagtacga      2460
     gacctttctc tcgtccttac ctcctggtag atttactttc taaccagaga aataaacccg      2520
     gtaattgatt cacaaacgac tagttcacgc tgttaagaaa tttcgtgaag gaatttcatt      2580
     tcctcttaaa acgtgctaaa atttcgtgtg gctcattggc ctggtgcaag tctttcgatt      2640
     ggacgccact tcggcgactt gcgtgtccct agcctacccc agttatccaa ccggggaaag      2700
     gggacctaca gcttaacgtg gaatccgaac cacgtgtcgt ttctggcgac tcctcacatc      2760
     gttgagaggt gaaggccgga ttaaaacgca gacttaaaaa aatccgaggt ccgaccgggt      2820
     atcgaactcg cgacccttcg gtttccagtc gaacgcttta ccccgagacc accgggcccg      2880
     acatatcact ttcacaaatt tcctaaataa gaaaagctcg ttgtcagggt aggatgaggt      2940
     ctgggccaga ttaatctttt cgtctgatag cataagtatt ttgccgtaag aagtatcata      3000
     agttgtgttt ctgtagctat ggaaatcatc agctgaaata aagaccataa agtacggtac      3060
     agataaaaat gcaaaacgat tatcaaccga aggcagagct aatgctcaaa cttaggtgta      3120
     ttttttgtcc ttgccttcct cgaccgagta tcggaaggcg tatgcaaaaa tgtataatgt      3180
     gttatgaata cttcgaacgc tacatttacg ttgactcttc aaaaaagaat actttgttta      3240
     caacgaatta aaattactag gcatgacggg atttgaaccg atttatgaca gattaccaac      3300
     ttaccgtctt actcactacg ccatccttcc attcgaatac gctcgcctta ctgactggta      3360
     taatgtcata cgtgaggtaa cactttctta agaagatacg atagccggga caatacgacc      3420
     ttaaccacta tgtgcatcta aattttactt ttaatctcag aaacactgtc agtattacta      3480
     cgtatgaaat ttagagacaa aattcatttc cacgatattc gtaataatac ttactaggaa      3540
     cttgtttatg aacgcttttt cagagcaagt agttgggaat gagtttgact tctgaggcaa      3600
     agaaagtgtt ctccacctcg tatggcactt cgcttcctct tgccttgtcg ataggtgctt      3660
     acttgcgaaa tgccacaact caagagcttt gataaaggtc gcattcttgc actttatgaa      3720
     gagggataca gtatcagcgc catttcccgt gctctaggat acagcaaatc cacgatacac      3780
     ctgtgggtga agaggatggc agatgaaggc catgtcaata gtcgtcgtcg ccccggacgt      3840
     ccacgcacta cgacaaagga gcaagacaat gatatactcc gctgcagtga tgaagaccca      3900
     ttccgcacca gcaccgaaat taggaacgtt ctacaactac ctgtaagtag atcgaccatc      3960
     cgccgtcgtc tcaacgagga aggaagatat ggacgaaaat cggcgataaa ggaaatgttg      4020
     acagaacaac ataagactgc cagattaaac ttcgcactgg catacgtaag caaaccaatt      4080
     tcattctggg agcaagtaat atttactgac gagaaggtat tttccacagc accaaacggt      4140
     tctgtccatg tgtttcgtcc aactggagcg agattcgaca gaaaatatgt ccatcagagg      4200
     caaaggtgtg gccgaactgc tgtcacagtt tgggggtgga tgtcggcaaa tggttgcggc      4260
     attctgtggg aactggaccg tccgcttacc agtagttact actgtgaaat actggataac      4320
     ataatgcttc cttctgttcg tgagacgttt ccggaaggca gaataatatt ccaacatgac      4380
     cgttccccgg tccacacagc aaattgtgtg aaacagtggt ttcgagtgaa cggagacgtt      4440
     gatatgttgg actggcctcc caaaggtgct gacctcaatc ccatagagca cgtgtgggca      4500
     gagatggaga agattattag gagccgaaga cctgcgccag caacgaaggc agcgctatct      4560
     gaagcagttc aggatgcatg ggaagagctg tcccagaata atgggtttgt aagaaaacta      4620
     gttacctctg ttccccggcg gctaagtgca gttgtagagg agaatggaaa ctggacacga      4680
     tactaaatta tgttgtcatc agagacaaag ctttgtttat attaaatgga agtgtcttat      4740
     tttcttgatt atttttcttg agatttacat tacttcgaag aaaagaaaaa ttattttgtg      4800
     ttaatctcaa cccttctgta ataaagtatt tcatcttaaa ttattacacg aactttaaga      4860
     aaaaccaaaa ccagcatgaa aatgaagaag gcttatgacg tcgatgccaa tgaaggcatc      4920
     aaagaaagaa ctatttactt tttttatcaa gtgaagaagg cattttattt attaatgttc      4980
     tgtttattta gatgtaggca gggtaccagt acagataaaa tcataagaga ggtgtcattt      5040
     ttaaaagtgt tgaaaggcca gctggtagac gcaaactcga gcgtttgggt ccactacatc      5100
     cccagttaca cgaataagaa tactttaatc gctacagttg tctttgtcct cctgtattaa      5160
     gcccttatca tcaattaaaa ttcaagttag agacagattc caacccgttc ctgtagatca      5220
     actatgcacc gactcaccta ctgccccgca catgcactta catagcaaac acctcgcccg      5280
     aggtgcgtcc cttgtgctgg tatgggctgc caatatgcat ggaattgatc agtagcactg      5340
     tgagcgaaac aacctacaga atttcataac gtattgctac tacacgatac cgttctctac      5400
     tgatttcaca aacagaaccc tccaagactc ggtttttaaa atacttmtct gacttatttt      5460
     tctgatcact tgctcacaaa tatttacctt tcccgctcct aatcgaacaa tcttcaacaa      5520
     aaattcattc cagacgaaaa tgcacttaaa acatcatttt acgacttctt taatttggaa      5580
     cagtttgttt ctgcgggcat gaactgagta aactacctaa gcaatttcag actcttccag      5640
     atataagaga atacgggact ggaaatagct taaccacttt tgagttaaaa gttttcttga      5700
     gattttccta ttgattttct atgtggatac ttgtagctct atcacagaac agctaaaaaa      5760
     tttactacga acgagactgg ctccacgagc cgcaagcacc gttgcatcgc aggcgactat      5820
     caaggctagc gaagacttac agtatgaggt tctttcttac tgggcgacta gttagtagac      5880
     cagatgaagc gaaacgtaaa agaagagact ggttgcaatt ttcgcgtgaa accactttcc      5940
     tgtactcaaa aacacgaatt aataacttta tctcacgcct taagtgaaaa tcactttgtt      6000
     gaatggaaat gacatgaaaa atcaagtgaa tttatcagct taattctgtg ctaaccagga      6060
     agtaactcgc cgttcacaga gttgccaaac gtactctgca atgttgccaa ttctccatta      6120
     gactagcgac aggcagaata cgtttgctcg gcgtctgtgt tcctcgcgct ggcttagcgc      6180
     tgacggagat agcggcttcg aaggcgcggc gcgcagcctg ccactgtgtt gactgagaag      6240
     agatatacct aacatagacg aataagtctt aatcgcattt ctttaactat aagctgtgtc      6300
     gaaagcgtag ctacgatgcg ccgactgcta cccgaactta gtaaataaac tttttcggaa      6360
     atcatttgag cggctctctt gatcagtagc tgtcggaggt attcttttgt ttctgtctta      6420
     agcaaactgc ttcgtcagaa gcgatttata atactagcat caccagacga tattaatatt      6480
     ttgagcacga tacatttaaa tttttacata ggcctacctg aatacgattt tccttatgaa      6540
     tgatttcatt ggcaccacct ctaacacata aatgcacaaa tgtaaagata gcattacact      6600
     gatttcaaaa cgcgaacttc acaaacaaat ttcataagtt tcgagcatat agtttccaat      6660
     caaaggaacc gtgcatataa acctttccca gtgactgaaa aataggactt atcatctgcg      6720
     ggaacattaa gcatctgaac aatttcaatg ttagttcgat tccagcttct aagtgaaagg      6780
     agaagcattt atgatgagaa tatgaaacaa ggaacaaaaa gtcgcgtcag taatgtcaag      6840
     aatatgtaat tcattttata aaaacaacgt tacgattaca gtactgctaa taaaatgaaa      6900
     agcacttgat gaatgagctt tgcaatttcc agactcccag aaaccataaa gggacgaagg      6960
     aaacaggaag aggtttccct cagcgtgtgt gagtcgggat ttccatatag tatctcacag      7020
     gtggcgtagt ttcttcgtag tttatttctc ggttgttcca ttctcacgaa ctctctagat      7080
     aatcacaaca ttccagcgat aattattaat tgttaaatat ttactaactt gcagtcgaat      7140
     ataactcagt gatcaaagcc tactgtaatt tcatcttaaa gcccattaaa acctctaagt      7200
     aacgctttta gagtagaccc tgttcacatt aacttgtcgt ccaatacacc tgttcatcga      7260
     cttggttgag tatcacgtaa aatttacgaa accagaaaag gaggattagg atttaatatt      7320
     ctgtcgacgt cgtggttatt tgaaatggag cacaagctcg gattgtttcg ttaagaatgt      7380
     ggaaggaaat tggctatgct tttgaaaagg aaccatgttg ccatttgcct agataattta      7440
     aagaaatcac ttgaaaaaca gaaggacaaa cagacatgga aactatacac tttcgtcatt      7500
     atatcactgt gcagtcataa ttcaaatagt tgaaaacgaa aagtgaaata ccgaatttaa      7560
     tactaattat acctggaggc aacagaaact tacatgatac gaaattaaag tcatttctac      7620
     acgttgccgt taagagtgat gttgcctttc tatcgagcac tgaaatctcc aataatgatt      7680
     actgaatcga agttttaaaa taataccaac ttctggcctg tgtaccgatc cggttttatg      7740
     gtagaaatga cacataaaag tagtaaggtt tcacattctg tagacgtttc ggttaaatgg      7800
     tttatttgca gtaacactcg tataacgcta aactacaatg tcacaacatc tagttctacg      7860
     atctggtcag cagtggaaat caaaacatct tagtaataaa gtctgtaaat aacattgctt      7920
     cttgcattcg ttatttcgct ttctttatct gtaagagtag ctttctcgtc accttcttat      7980
     cacataatcc tattaagtcc ttaagttttt atttccttaa ttcccagaat ctacgacgag      8040
     gtaaagagag gcagaaagga agaggagatg gtcagagaga gaaaggaaga agagatggaa      8100
     gacaggatga aaggaagtat aggacggaca ggattgcggg atggacagag ggaagaggag      8160
     gagctggagg aggtagaagg ggacgaagag acagaggcag atcgtaagag agagagagag      8220
     agaatgggga atggtagaca gaatgcagaa agcaaatgct tttctcaagg gcaacagggt      8280
     atttgactgt tctctggaaa tcatcttaaa tgggtgatca tgtcatctta tgctcataac      8340
     atgagctgcg gtggaatggc cgagcgctct aaggcgcctt gctgcggagc gcgcggttgc      8400
     tcctcgtcgg aaatcgcgtc gcccctcggg catgtgtgtg tgtgtgtgtg tgtgtgtgtg      8460
     tggtgttgtc cttacattac tttaagttag tttaagtagt ttgtaagcct agggactgat      8520
     aaccacggta gttcagtccc aaagatttac aaacatttga acatttcata acatgacttg      8580
     ttttcctcgt caattgcagt attctttaaa aacaaccgga aatggaattc aaatataatt      8640
     tgaaatccag ctaaaacgct tcttttgagt catgtgatgc ctgtaacctc aacccacatg      8700
     gtgtgctcct actgttgtaa cattcactaa cagtgatata ttgtctgtgc attcgtgttt      8760
     tgggaaaagg tctacaaata ttgcgtagtg ccgaactgta caaataaatc tataaaaatc      8820
     tagaaaattt gattttgcat gttccaagca atgataaagg cataaaatgt ggtttatact      8880
     cgctcgtaga gatcctaatc agatagcggt cacttggtgc gtttaatttt gggaggatta      8940
     ctttgatgta agtaaacact ccgtacaaca attattattc tattagttca caaccggtat      9000
     taagaatcat gctctgcagc cgcaaaggtg tatagtatta ttgtgtacac atcagtgaac      9060
     tgatgtttac atttgtgaaa caggtgttca cgmtataaca cgccagcgtt ttgtatttta      9120
     agtcgtttac aaacgtagtt ggtgaaagta caaatttcat gatggttgtc ttttcagtat      9180
     ttacgtcggt gaggcagtgt ttcagtatat gataaagaca tcaacacttt gtctcaaaaa      9240
     cgccttttta gcgcatatag tgaaaacaac tatatttagt aaaatctgaa ataattactt      9300
     acttcgtcaa taatttcatt atatttcaca gcatcacgtt cttccgcgat aaaaaaagag      9360
     agaaaaaata ggagagggtt ttattttgcc gctgtggagt ggccgagcgg tctaaggggc      9420
     cttgctgcgg aggttcgagt cctgcctcgg gcatgagtgt gtgtgtgtgt gtgtgtgtgt      9480
     gtgtgtgtgt gtgttgtgtt taggttagtt taacttagtt taagtagttt gcaagcctag      9540
     agactaataa ccaaagcagt taagtcccat agaattacaa acattagaaa ttttttaggt      9600
     tggatttgaa caaggaatgc aaaatttgta aacgatactg gaaccgcatc gctaccaagc      9660
     ttatgtggag ctgattaagt caattcaaaa cttcgacatt ttatcttgga atattttaat      9720
     tttggcacgt aagccaagat agttatcctt ttaatttcat tcttctttag cctaacaagt      9780
     tccgatttaa cctgacaaat ttctttgtaa ccaaacagca cgagaaaaat gcatagtaat      9840
     ttgtggaaag tgactagcgc gcaakattaa attgcatata cacatgaatt aatctgaatc      9900
     cgaaatgtaa ctacgtagta gcgcacttac catgtaattt ttgcagtggc ttttataaca      9960
     gagttaattt aaaagtgaaa tgcatttggt agaaaaacga agacttaatc taagacgcaa     10020
     tccatattta cacacgttta tggtgtgtaa tagtttgtat ctttggacta gagtcagtct     10080
     gttgacacaa acaaatatac gtatatttta ctttaaatgc aacttccacc tttcttactt     10140
     acggtacgta aaaatctgga ttgttgtcga gaaactaaga taccttaaac gcatcaactt     10200
     tcggaaattt ttcactatca gacttcacat aattttctcc cttcttacaa aaaaaatgcg     10260
     ttttccatca caaaaaactt aattgtacac agaaaaagta aggaaaaatt tagtaacttt     10320
     cgctaacact gctctaacac gcatatggct tcttcttcct cgtgttgtgt gaaacaccag     10380
     agcttaagcc aataacagag cgtttttgat cacgagacct aaacttgaaa tttaattata     10440
     ttcatgctat aatttcaaaa taataacaaa tgttttgtaa gaagacggaa aattctattt     10500
     gaacattaca atcatccaga ttgaaaacaa ttcgaaccgg attttaaaca tagcataata     10560
     gcctactata tatggcacac tccagatttg gtaagccatt tcaatgttta ggtaggaaaa     10620
     ggggaacaaa atattatgta ctgattagac tgatgtattt tctcggttcg tctatgttag     10680
     caagaatact tttgcttact gtcccattca tttcatacca gactgagcta cagtaaagcg     10740
     tagccaggtt tacctagtta acatgaaaat ttcgaatgtt ggcaaggcaa caaaattaga     10800
     agaagtaagg atggtgaaat taataaaata tttcgaaatg aaacataaat catttttccg     10860
     taagacctct gattataaaa tcgcccctac acagatatta aatgccaaat gagtaattaa     10920
     ccctttaact atagtgaact tctacagacg ttcattgtaa tcgggccttg cagaaggtgg     10980
     actgctgtaa aagctgggga aaagaagtcc cctctgatga acttccgtct ctaatgacca     11040
     ctctgtcgac gggacgttaa acgctaatct tccttcttgt tttcgcgtga actggtgcag     11100
     tcctctggag ggaaagtctt tcccaggcga tttcaaaaac agtccacctc tgcaaggcca     11160
     gattattgtg gtattttaaa gaagtcagca gtagttacag agctaaacgt cgctctctgc     11220
     gtgacactca agtaaaagcc gataaacaat tgcatcgggt gaccatttga taaacacagg     11280
     aactattttw aggcgttaat aacacttctc atagtctcta aaacaaaatg aaaatgatcg     11340
     ttgtccagtg agttagagtc accggaagtg ctatgttttt aacatatcag cgtattttaa     11400
     caattacata tcgataatta ttgtccgcgg tgggcgtcag actggaacta cgaacaaact     11460
     ataccaactg cgagatacta tacagaaatc ccatctcacg cactcttagg gtaacctctt     11520
     cctgtttctt tcgtacctct ctgtttctgg gagactggaa actggagagt tcattcatca     11580
     gatgcttttc acttttattt aaacagcatc accagcagtt acactgtaat ctttacgagt     11640
     agaccatact tatcgtccct ttcgatttta tagaatgaat tacatattct aaacattact     11700
     ttcgcgactt tttttccttg tttcatattc ttatcacaaa tgcttctcct ttcacttata     11760
     agcttgaatc gaattatcat tgaaattgtt cagatgctta attttttcgc agatgataag     11820
     tcctattttt cagtcattgg gaaagattta tttgcacggt tcgtctgatt ggaaactata     11880
     tgctcgaaac ttatgaaata tgtttgtgaa gtttgcattt tgtaatcagg gtaattctat     11940
     ctttacattt gtgcagttat gtgttagagg tggtgccaac gaaaaaattc ataaggaaaa     12000
     tagtattcag gtatataaca ttaaaatgta ttgtgcagaa aatgttaata gcgtctggtg     12060
     atgcgattaa gacttattgg tctatgctag gtattatctc ttctcagtca acacagtggc     12120
     aggctgcgcg ccgcgccttc gaagccgcta tctccgtcag cgctaaggca gcgcgaggaa     12180
     cacagacgcc gagcaaacgt attctgcctg tcgctagtct aatggagaat tggcaacata     12240
     gcagagtacg tttggcaact ctgtaagcgg ggagttactt cctggtaagc acagaattaa     12300
     gctgataaat tcacttgatt tttcatgtca tttccattca ataatctgag tgattttcac     12360
     ttaaggtgtg acataaagtt attaattcat atttttgagt ccaggaaatt cgttccacgc     12420
     gaaaattgca accaatctct tcttttaagg ttacgcttga tctggtctcc taactagtcg     12480
     gccagtaagg aagaacaaaa taccggaagt cttcgctagc cttcgggtaa cgtagtcggc     12540
     tgcgaaacga acgtgctgtc gactttcgat gccaatcgtg gtgagagcaa aaatttttag     12600
     ctcttctctg acagagctac aggtatccag attgaaaatc aatagggaat tcttaacaaa     12660
     actactcagt caaaaggtgt ttagctgttt ccaggacggc attctctcat atactctgaa     12720
     agtgacttac aatgctcagg tggtttaccg attccgtgcg tgtagaaacc aatttctttc     12780
     gagttaaagc tgtcgccgaa ccatgttgaa gtcaatttgt ccagaaatac attttcttga     12840
     cggttggaca actacttcca aaaatgagta aaaagcctta acatgagact agtataattt     12900
     ctgtgtcaga agcttgctta tagttgatca tttcattgag caccaaattg tcttaactgc     12960
     gtctagtcga tatgctaagc gcagtttccg ttacattgcc gtagtggtct ggtggatcgg     13020
     ttgtagttta gtatctgtca tgtgtgcgtt cgattgcgcc ctataggtgt atatttttaa     13080
     ctggcacgat catgtctact tcacctctgg taacaccaag tgaagaacgt caagttgcac     13140
     cgtagttaac aatccgtatt aaaccgaatt atttcgctat caactcggac agagccgatt     13200
     tatcgttgcc agtaacaggc agaatacacg gcaatcagta actctgtcgc tagaaagctt     13260
     ttcttatatt acaaaacttt attttatttt ataaaccaat ggtcctttaa ggtcacgtgt     13320
     ctcgtattgc aatttaactt gagacgttaa aaattatggt gctggactgg gattctaatt     13380
     cggatctcct cttttgccgc actcgaccct ctcggaatca tatagttgaa tcatttcgtt     13440
     gctttctccg agactgccga ctcctctagg tctccacgaa aggcacgtat atggattcga     13500
     atccaggtcc agcacaaaat attcataatt tcatttgacg ccctagatag agcacactgg     13560
     actactagta aaaaattatt ttgaatgtct cttcgtgcat tatsaacgcg aaccagggtg     13620
     ttgcggtggt cttggggtaa agcgcttgaa tggtatgaag ggtcgcgggt tcgaaaccta     13680
     gtcagatcac cgattttttt caatctgtgt tttaacccag cattcacgtc tcaacaatgt     13740
     gaggagtcgt cataaamtac acgtggtttg gattccacgt taaactgtag gtcgcctttc     13800
     ccggttggat aattggggca ggttagggac atgcaagtct ctgaagtggc gcacagttga     13860
     atgacttgca ccaggacact gagccacacg aaattttatt attattatta ttataacaac     13920
     gataggtgcc gttgttacta gtcagacacg cacgcatcgt cattcctgtt gagttaacat     13980
     ttgagattta acgtccattc gtgcttagaa aggacatcgg taggttcggg gttcgattcc     14040
     cggtgacgca taacgtaatt atatcctgat tacagattca aacatcccgc tgctggtgaa     14100
     ataattcgac tactaacatc tgacttcact tagttatctt ccatttagat accgggtatg     14160
     taactcaaaa tcaaatgttt gtaaatctat gggaccaaac tactgtggtc atcagtccct     14220
     aggcttagaa ctacttaaac taatctaagg acaacacaca cacccctgac cgaggaagga     14280
     ctcgaacctc cgacaggagc agcctcgtat gtaagtccca cacagaactg agtctgggca     14340
     cttgtgatta gggacataac ggtgattatt aagttcctgg ttcagtaata aataaataaa     14400
     taaaaatatt ttaagaattg gcattttata tgatttgatt tgcgcgttct gatatttgtg     14460
     aggaaatctc caatatttca cacatcttta tgcttcgtca gctgtgacaa tcttaggcat     14520
     aatcaagtat ctataagaca tgaatgcatt gcttggttag ctacggctac aggtggttgg     14580
     tttgattcca gaacaaggta gtttgtcata tcaattcaag ttcaaagatg tgtacaaata     14640
     tttgttcagg tatgaatacg gagaaaatgt tggtgatacg cagttaatat tgaagtttcc     14700
     atagtgcgtt tgctgctgtt aattgagttt ttattatctg gttagttcaa caatcggtta     14760
     ataaaaatcc gctcgccagt ggaacgacgt ttcgcaattg tgagaaaacg atttagagaa     14820
     caaaagtact tcgaatttct acaggacttt aggatttccg atactatagt aaaatctgtt     14880
     gtttgtaaca atattaaatg ttgtttaagg attaattaat gttttatgtg acggagtttg     14940
     ttatatcaga ctgtaataag tgtgacaata cttaagatat gtcattgtaa taaattggat     15000
     ttaataaacg ttaagaactt aataacgtgt ttccttttat ttgcaaaatc gtggtgttaa     15060
     tttacatctg gaatgattgc cataaagagc agttgtctgt agtggatcca ttttgaatag     15120
     tcgaacgact ataccgcgga gcgagcagag cacccgcaag acacgtacgt tagttgggtt     15180
     gcatgcacat caggcgaaac gcaattcagg tcgttcggat atttttgcgc atggtagtac     15240
     a                                                                     15241
//
ID   DNA-7_PBa   repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-7_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-460
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 594-594 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. Likely TSD is TA.
XX
SQ   Sequence 460 BP; 176 A; 42 C; 54 G; 188 T; 0 other;
     cactgagaaa aagatttctt tagatttagc aattctattt gtttgacttg aatttattta        60
     atttaaacaa cataatttta tattaaacat tattttgttg aattaagagt tttgttgttt       120
     cgttagagta taccatgttg tttaatagaa aaaacactat tatttaaagg aaataaaatt       180
     tatctttgaa ctaaataata ctttgtttgg ctagattaaa tattgtttca atgaaagaaa       240
     gagattcttt aatattgttg aagcatataa taaagagcgt tacttttttc aaacaattta       300
     ttaaacaaat attttattta aaataaagct atttattatt tgaaaaacca aacgatcgaa       360
     tttgttgaat caataattgg tttgtttgga ctatttcaaa aaataaattt ctttgaatct       420
     aataaaattt attaaatcca aagaaatcgt tctctctgtg                             460
//
ID   DNA-7_PPo   repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-7_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-536
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2731-2731 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 16-bp TIRs. 8bp TSDs.
XX
SQ   Sequence 536 BP; 146 A; 92 C; 130 G; 168 T; 0 other;
     tatatatatg tcgcaggaag ctataaattg actgttgctt tatgtgtaac aaacgttatt        60
     gtcttgcgtt ttaatattgt ttaagataaa attattaatt taattccttt ttctcgaaag       120
     tagaaactcg atgtcatttg tatttagttc tttttaaaat taaaagtacg tcaacttgca       180
     tacgaccaat gagagcagag caagcggctc gagtggcctt tattagctcg agcggggtcg       240
     aggcgcagtt cagtgcttag agggcgacgt ttgtagtgac atgttgtggt gcgtgttggc       300
     aaagtggcga gtcgattgag gagagtagtg tagtagaagt acgaacaggt gccacgaacc       360
     cgctgctcgg tcttgcttgt tgatttgcta tgtgataagt gtagattccg aattatattg       420
     tgttaatccg tgtctctagt gttttaatgc tcgcacttca cccaaatgac gcccacgaaa       480
     ccaagactcg gtagcaatga tgtcggggag aaagacccaa ctccgacata tatata           536
//
ID   DNA-8A_BTa  repbase;    DNA;    INV; 2221 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8A_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2221
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 942-942 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are likely 0-bp long. No
CC   TIRs, probably from Helitron or Crypton family. The sequence
CC   967-1942 is an insertion of Mariner-type DNA transposon flanked
CC   by TA TSDs.
XX
SQ   Sequence 2221 BP; 638 A; 458 C; 428 G; 697 T; 0 other;
     ttgtcatggg aacggagttc cccatgatat tagaatcgtt ccgttgcttt cgctatggga        60
     ttccctatac ctctgcgacc ttgagcgttt cgcccagtct ccgatttttg gttgattttc       120
     cgatgtatca aaaaccgttg tattttttag ccaatcatgt ctctacgtca agttgtgttg       180
     attgctaaaa ttcgctttca gcgagttttt ttccaccttg agatgtcgtg tctgactggt       240
     aaatctgcgc agaaccacga agttccgttt ttaggcaaat tctttttttt gggaggttct       300
     gattggttat ttttcgccat cagttttctg ttcgttggtg caaaagatcg cctacctcgt       360
     tgctcttgag aagccgccat tatcccacct caaattttaa acatagatat aaagaaataa       420
     taaccatcgt acaaggtgga aaattgctct ggaggacccg ttacggatat atgagccaaa       480
     atcagaactc gattgatgga tttaatccat gaatacagaa atattgcctg agcttactgc       540
     cgcgatcgca aatgcctgtt gatatgaacc tcgtgacaca tgacagcata ggtaaacaat       600
     gtctcacaga gtaatgcggt tgatccgttg tgtcttatca cgccagtggc cgaaccgttg       660
     aaatctcaag gacgtctttt gtgaagcccc gctcagcgtc cgagatcact taagtgttct       720
     ctttttctcc atgcatatct gagcagcgaa atagctcaaa tggctgcgtt acctttctgc       780
     ctctgggaga gtgtcacttt ttgtgcgagc gggggttcga atctcgtagg ggacagctaa       840
     tttttactgg ttgtattgaa tgttttagac caataatcta acaataatta atacttggca       900
     acttaggaag cacataggtc ccttatgatg cgtattcggg catatgtgta gagtaaaaat       960
     atcatacgta gggtgtccca aaagtaccgg gactggttct gtaacttcaa aagtaagata      1020
     gatacagaca tgattttggt ctcattttaa agatcaactc aatacctatc gattaaaacc      1080
     aagatcagct caatcgaata aaaattgacc gagttatgac aatttgaaat tagtgaggaa      1140
     agtttacccc tacggttttt aggaagattt ttcgcttacc aggattcaaa aagttaatat      1200
     tcgtatccac tttcctccga atcttccata acttcctttt gcttttcaaa gtaccgtcca      1260
     tcaaaccgga tgcacttttt catgcgctct tgccacttat ccaacattgt tttcctgaat      1320
     tcttcctctg ggatggagtt gaagaagttt tgaattgcat tctggatttc ggtcttcgat      1380
     acgaatcttc gtccgcgaag ctccttttta agcgtaggaa acatccaaaa atcacatgga      1440
     gccaagtcag ggctataagg gggatgaggg attgtttcaa ctccattttt actcataaat      1500
     tcacgtgtta agctcgatgt gtgaggccgc gcattgtctt gatggagtat ccacgaagct      1560
     ttcaagtccg accgtttccg ggaaatgtgc attctcaact cctttagtac tttgcaataa      1620
     tacgcactgt caactgttgt gtttgatggt acaaaatgtt gataaatgac acctcgaaaa      1680
     taaaaaaaca caataagcat cactttatcg gccgactttt cgatttacgg cgatgaagaa      1740
     tcttccttaa aaaccgtagg cgtaaacttt cctcgctgat ttcaaattgc cataactcgg      1800
     tcaattttta tccgattgag ctgatcttgg ttttaatcga taggtattga gttgatcttt      1860
     aaaatgaaat caagatcatg tctgtatcta tcttactttc gaagttacag aacaagtccc      1920
     ggtgcttttg ggacacctta tgtatacttt acgccgaaaa agcgaacctg aaacttaaat      1980
     gcgttaactt ccgaaaacca tatataatcc aacgaaaata aataattggt acataacagc      2040
     tttcttgtat gcaaagaaaa taattaaaaa tgttaaaaaa gagatgtcaa cacaaaatta      2100
     catagcccct tcaattcaga agatactaca aacgaactgt accttaacat tttcatatcc      2160
     cagaagctaa cgttcccatg acgaatattg ctatcgctag cgattgcaaa atccaacttg      2220
     t                                                                      2221
//
ID   DNA-8B_PPo  repbase;    DNA;    INV; 1268 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1268
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2732-2732 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 14bp TIRs.
XX
SQ   Sequence 1268 BP; 422 A; 212 C; 242 G; 391 T; 1 other;
     ccatggaggt aataagtaca agtacaacag gagtgtgttc tatctgtacc tcttgcagtt        60
     aaaataaaga aaataaaacc ttatgctaag ggcgtaagag tcttgttgca cgcaaaatga       120
     aattgaaacg agtgagaggg ctacaagtgt ccgmtatttc cctttctaac agtgacttag       180
     agttgccaga tatcaatcct ttcgttgttt gtagaaaaat aggcaattga tgtaatgtaa       240
     tgcagtaaaa atttactttc aaaatgtttc taaatattaa taataattta ttaccgacat       300
     gttaaagcaa tattatttgt tgctacatgt aaaactttat taacgcaaaa aatttgcgat       360
     tggcgtacag gttttctttt atttgtttga aattcgaaca cctgaactga caacaccgca       420
     tgacatcgcc gaatcggact tcaatggcgg cgtttttgaa atccgtgata tttttaaaat       480
     ttccttgtta aaatggtgag aacttgtgtc gtggaggctt gcggaagcga gtattatcct       540
     gattgtggtt tatcttttca taggtaatag ttttaaacat aatttgttag tgaagaatta       600
     cggtgaccat gcatgactat ccaatcctag aaatcctgag aatgattgag agaatcatca       660
     atcaaatttt actcgattat cgatttcgaa atttcaaata ttttttacag aaaaagtaag       720
     aactctcaaa cgatatttct ttcctctcaa tctctcaaac gatttgcata aaaaaggtaa       780
     aaaaaatgaa gtgtgggggc caacttcacg ctaaaaattg aaattgcttt tacggagaaa       840
     gtaggaactc tcaaacgaaa gtttctttct ctcaaaccct ctctaacgat tctcaaacga       900
     tttgcataaa aaaagtaaaa aaaagaaggt gagggggtca acttcacgga ggtgtccatc       960
     tgcatgtcgt gtcccacaag taccactagg taagtagtat atgacgcgtg tgtgaaaagc      1020
     aagcaaaaac gggaaatgta tagtgccgca tagagcaagt ttatcattag cacctttgat      1080
     taaaatccat ctgaagcaat gatctgctga cgtcaggtca cgaatatttt tttataatta      1140
     ttgtcctaaa atcatatttc aatatggtca ccatggccag agagggaaaa atggtacagg      1200
     tattgaggtc tcgctcggct tcaatttttc gacaagagct ctatcctgtt ctagtaatac      1260
     atccatgg                                                               1268
//
ID   DNA-8N1_HSal repbase;    DNA;    INV; 816 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-8N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-816
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 833-833 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 816 BP; 289 A; 125 C; 127 G; 275 T; 0 other;
     ggtaaaactt tagaataggg ccttttccga attttgatat ttatttgcta ctctcatggt        60
     aaaaatcttt gttgtgactc cgacagtgat aatcaatcgg gggagcccga aaaaaatgtt       120
     acccacttat tttttgaaca atttttttgg taaatattca gaagtactat tataccaaaa       180
     actacgtttt cttgttcagt aatttacaaa actagctgta aaaaaacatg tatacaaagt       240
     tttacatata tattaaggga ggggggaggg gggctaagat ctttatagga aaaaacacga       300
     aaattttatt ccatatattt aaaattttaa atatcgattt tatactgatt aaataccgtt       360
     cacagttgtt actcgaatct ttcgccttac taaacagatg agtctacgat atactaaaaa       420
     tggatactga aaagattagc aagaccccta cgcaaggtag gacgtatcat aaattacaag       480
     caaaataaag cagagcatta ttcacaatca tgctctgctt taatcaaaag cacaaattta       540
     tattataaag tctaaattat agcggagaat agtttatgtc tttggtttat taaagttcat       600
     tgagtttttt atacttttac tcaatagttt aaatttggtg catttttcct tcagagtttt       660
     ataagatccg aaaaaacttg aaaaaaatag gtcggtaaca tttttttcgg gctcccccca       720
     ttgattatca ttgtcgtagt cacaacaaag atttttatcc agcaagtagc aaaaatatat       780
     caaaattcgg aaaaggccct attctaaagt tttacc                                 816
//
ID   DNA-8N1_PBa repbase;    DNA;    INV; 1164 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   10-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1164
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 595-595 (2014).
XX
DR   [2] (Consensus)
XX
CC   >86% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1164 BP; 302 A; 278 C; 264 G; 319 T; 1 other;
     gagtgagtcc cagttgcgca cagaataaat cggacacagc aggttgaatg gatcggacac        60
     aggtccaaac ggacacaata aggaacggac acaaggtggt tgaaatcgga cacagtgaaa       120
     atcggacaca gtgacaatcg gacacagtgg caatcggaca cagtggcaat cggacacagt       180
     acaatcggac acagtaagaa cggacacagt gccaatcgga cacagtagga aatggacgca       240
     cggatagttg caataaatag ataaatagat aaaagaatct ggcaaaaaaa cggcggtctg       300
     cctcgcgaac cgagatatta agcgttaaag ttgatcactt ttttggttag gaaatctgtc       360
     atagcgactc gatacagcgc taaaaagtgt taaaaataaa agtgttaaaa gtgttattat       420
     attcgaagtg caagatgcaa tctttcgcct tactaaattg atgagtctat catatactaa       480
     aatgatagat cctagaaaga ttagcaaaga ccccaacgca aggattgggt gtgaagtttt       540
     cgctgatctt ttcattttgt tacaaatata attttgtgtt gttttcgtaa ttagttctgt       600
     gatagtgggg ggggacttcg cccccccaac ccccccacca gggggcttcg cccctcgacc       660
     agggggcttc gccccctgac ccccgttcgg ggggcttcgc cccccgaacc cccctatcat       720
     gcgtacagag tcacaacgca tgctcagttt gctgcattat gtcgctatga cagatttcct       780
     aaccaaaaaa gtcgtcaact ttaacgctta atatctcggt tcgcgaggca gaccgccgcg       840
     tttttttgcc agattctttt atctatttat ctatttaact atccgtgcgt ccatttccta       900
     ctgtgtccga ttggcactgt gtccgattgc tactgtgtcc gattgcaatc accgtgtgtc       960
     cgwttgctac tgtgtccgat tggcactgtg tccgattttc actgtgtccg atttccactg      1020
     tgtccgattg ccattgtgtc cgattttcac tgtgtccgat ttcaaccacc ttgtgtccgt      1080
     tccttattgt gtccgtttgg acctgtgtcc gatccattca acctgctgtg tccgatttat      1140
     tctgtgcgca actgggactt cccc                                             1164
//
ID   DNA-8_AAe   repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-238
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1262-1262 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. Present in ~3000 copies in the
CC   genome.
CC   TTAA TSD.
XX
SQ   Sequence 238 BP; 64 A; 42 C; 53 G; 76 T; 3 other;
     ggtgacacgg gagaccgtgt tattttccct atctttcgtc tcactctaac aattatcatc        60
     aaaactttgc ggaagcaaat ctcgagtttt agtgaaccga tgaagctgaa aattnantgg       120
     gttgtgcact acatatatag aatcatagtg ataaattttt cgcatcgata tatggagtgg       180
     tncttgagat ttgcttcttc aaatggatag ggtgattatg atgacgtccc gtgcggcc         238
//
ID   DNA-8_BTa   repbase;    DNA;    INV; 1858 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1858
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 629-629 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are likely 0-bp long. No
CC   TIRs, probably from Helitron family.
XX
SQ   Sequence 1858 BP; 606 A; 339 C; 316 G; 597 T; 0 other;
     ttgtcatggg aacggagttc cccatgatat tacaatcgtt ccgttgcttt cgctatggga        60
     ttccctatac ctctgcgacc ttgagcgttt cgcccagtct ccgatttttg gttgattttc       120
     cgatgtatca aaaaccgttg tattttttag ccaatcatgt ctctacgtca agttgtgttg       180
     attgctaaaa ttcgctttca gcgagttttt ttccaccttg agatgtcgtg tctgactggt       240
     aaatctgcgc agaaccacga agttccgttt ttaggcaaat tctttttttt gggaggttct       300
     gattggttat ttttcgccat cagttttctg ttcgttggtg caaaagatcg cctacctcgt       360
     tgctcttgag aagccgccat tatcccacct caaatttgaa aaatagaagt aaagaaataa       420
     taaccatcgt acaaggtgga aaattgttct ggaggactcg ttacggatat atgagccaaa       480
     atcggaactc gattgattga tttattccat gaatacagaa atattgcctg agcttactgc       540
     cgcgatggca aatgcctgct gatatgaacc ttgagacaca tgatagcata ggcaaacaat       600
     gtctcacaga gaaaggcgct tagctcgttt ctccagaagc tacgaagacg cgaatcgccg       660
     aatcgctcaa ggacaactct tgtgataagt cccgcccatc gtccgagtct tttaaatgct       720
     attttttctc atgctgtcgc tgatctgtga tagcctagtt gactgaggcg cctcatattt       780
     tgataaggtg cgggcaatag gcgatcggga gttcgatacc cgacgatggg agttactttt       840
     taatggttgt attgaatgtt ttagaccaat catcaaaaaa taattaatac tagatgataa       900
     atgtacgaac attttctcgt gagttaatat gttaaacaaa aatactggaa tatacctcct       960
     tcatataatc agccacatgt tcccccaaat taatgacgtt attttctttt ttcaataaag      1020
     ttaatttgca ttcaacgttc gtaagttaag caaaaagtac ctattgatac aaatagaaag      1080
     acatgaaaat agtatgtcta acatttcagt tttttttttt tttatttatt ttttgttttt      1140
     ttgttttttc aatacaacaa attgactggg actagaatca ttgtatctct gaagacaaaa      1200
     gctaagtttt ttgatacaga aatactaata tattcatcct ttatataatc agggagatgt      1260
     tgacccaaat attgatgtat attttctctg ttcgcccaaa ttaatgatgg tattttcttt      1320
     tttcaataaa attaatttac attccacgtt cttaaagcaa tattttctcc aaaattcagc      1380
     aaaaaataac aatttatacc tacgcaaaaa gtaaataaat aaataaataa ataaataaag      1440
     caatgacatg aaagtagtat aggtagtaca catctaacat ttcagttaca tctatttgaa      1500
     tgaaaaaaat ggcaacttag gaagcacata ggtcacttat gatgcgtatt cgggcatatg      1560
     cgtagagtaa aaatatcata ctttacgccg aaaaaacgaa actgaaagtt aaatgcgtta      1620
     acttccgaaa accatacata atccaacgaa aataaataat tggtaaatat aacagctttc      1680
     ttgtatgcaa agaaaaaaaa ttaaaaatgt taaaaaagag atgtcgacac aaaattacat      1740
     agccccttca atcctgaaga tactacaaac gaactgtacc ttaacatttt catatcccag      1800
     aagcaaaagt tcccatgacg aatattgcta tcgctagcga ttgcaaaaac caacttgt        1858
//
ID   DNA-8_LMi   repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 19.11, Created)
DT   01-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2961-2961 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.  TSDs are uncertain.
XX
SQ   Sequence 1286 BP; 435 A; 251 C; 244 G; 355 T; 1 other;
     gggctagcgc gcacgggcga cttttgtcac cgtgactgtt ttgtcactct cgtcaagtct        60
     atggatacat acggagatgc gcgcacgctg cgacgtgaca acgcggtgac atttttgtcc       120
     gccgacccgc gaacaagccc gtgacaaaac tgtcactgcg tcgctaggtt ttgatagctg       180
     cgcgcgcacg ggtgacaaaa ttgtcactct ccgtgcattc tccgctccac attttcttgc       240
     cgattgtcaa cacagacaca tgcaaacatg gcatcaacgt cttagcataa catgactgta       300
     tacgaaggcg acattcatag tggtatttct attgatgaag ttgaaaaata ctttaaaact       360
     ggctacggca accaattttc acaattacta accattcttg taaacatcat ttctacaatg       420
     tgcaagacat ttacctatga aaggagtagt cagaacaatg ttaaacacat ccagtagcta       480
     atcaggaaca atctttgaca aaagtgtatc aaacgacgga aattttgaaa gttttctagc       540
     ataacattaa tacagctttt acaaaaaaag aatgtatttc caggacagac tgaktcaata       600
     attaaaacaa aaagaattca gttttgagac atttcgtaaa aagagcaaaa ataaaggcaa       660
     atatattatt gagtcatcca ataaaataag tccacgtgga aagctgtgca ggatcgtaca       720
     ggaaagaaga caactcataa aatgttgtga tatcacagga tggataaaag tgattaatct       780
     cagaaaactg catacaattt aaatttttat tatgaagctg tttgttagta aaggaaaaaa       840
     tcggaatgca acagtgaaat aaacaatact gaaataaaat ctatccgtat ttctagtaca       900
     gtaggcgcaa ctgagcacct cagtaccatt attcactgaa aatattcagc tggtatcgat       960
     aactttcaac agtcatttga aaatattgaa aagaaaagct tatattttgc cgaagactat      1020
     gaaacattgc agcgacaggc taataagtgg gaagttttgc tataagagga gtacagaata      1080
     ttctttttta cgatatttta ttagtctcat gagttcacaa ataatgaccg tttcttccaa      1140
     atccatatcg acaaatgacg cttgtatttg caaacatgtt cagtgactgt catctgtcgt      1200
     gagcgcactc cgctttgatt acgtgacgtg acagtgacaa aaactttttt gtcacggtga      1260
     caaaaatctc ccgtgcgcgc tagccc                                           1286
//
ID   DNA-8_PBa   repbase;    DNA;    INV; 138 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-138
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 596-596 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to consensus.
XX
SQ   Sequence 138 BP; 41 A; 28 C; 25 G; 44 T; 0 other;
     ggcccggttg caccaacgtt attttggctt taagcgagac ttaaacatgt atctgtcttt        60
     atctttcttt ctaaataaat aaagacagac atatttaagt ctcgcttaaa gccaaaataa       120
     cgttggtgca atcgggcc                                                     138
//
ID   DNA-8_PPo   repbase;    DNA;    INV; 1032 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-8_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1032
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2733-2733 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. 8bp TSDs.
XX
SQ   Sequence 1032 BP; 337 A; 161 C; 183 G; 349 T; 2 other;
     catggaggta ataagtacta cgtacaacag gagtgtgttc tatctgtaca tcttgcagtt        60
     aaaataaaga aaataaaacc ttatgctaag ggcgtaagag tcttgttgca cgcaaaataa       120
     aattgaaacc gagtgagagg gctacaagtg tccgmtgtgt ccctttctaa cagtgaccta       180
     gagttgccag atatcaatcc tttcgttgtt tgtagaaaaa taggcaattg atgtaatgta       240
     atgcagtaaa aacgtttact tttaaaatgt ttctaaatat taataataat ttattaccga       300
     catgttaaag caatattatt tgttgctacg tgtaaaacct tattaacaca aaaaatttgc       360
     gattggcgta caggttttct tttatttgtt tgaaattcgg acacctgaac tgacaacccc       420
     acatgacatc ccgactcgga cgttaatggc ggagtctttt ttgatttcgt gatatttttg       480
     aagaatctta gttaaaatgg gaagaatttg tgtcgtggag gcttgccgaa gcgagtatta       540
     tgctgattgt gggttatatt ttcacaggta atagttttaa acataatttg ttggtgaaga       600
     attacggtga ccatgcatga ctatccaatc ctagttcaag aacaaataac ttaaacactt       660
     atgcatttat ttcttccttt ctctattaaa ataactttgt tttaatttca gatttaagat       720
     ataaggaata agctaggttt gcgkcataaa cttcacaaga cttttattta gcaatgtctg       780
     atttagaatt atgtattttg tattgttttt agaaaataca ttaatgataa cactaatacg       840
     ttaaaatcca tctgaagcaa taatcagctg acgtcagaca acaaaaacaa gatttttttt       900
     taatattgtc cttaaatcat attttaacat agtcaccatc gccagagagg gataaaacgg       960
     acagttattg aggtctcgct cggcttcaat ttttcgacaa gagctcaatc ctgttctagt      1020
     agtacatcca tg                                                          1032
//
ID   DNA-9B_AAe  repbase;    DNA;    INV; 1276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-9B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1276
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1263-1263 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. Present in >6800 copies in the
CC   genome.
CC   TA TSD.
XX
SQ   Sequence 1276 BP; 434 A; 192 C; 187 G; 463 T; 0 other;
     ggactgtcca ttttatagag tggacagctt gtttatgcta tatctttttt atttattgat        60
     aaaatcgtaa tcggttttct gtgcatcgtt caactattat tccacaatgt tatgaaaata       120
     taaaatctta caaaatgctt ttggttgaag aaattaatgg tttttccaaa aactcctaag       180
     aaaaactgtt cgtcaaagtt aagcattatt tttcgcacaa caaaaatcct tatttttatg       240
     aacaaaattg tgtgttggta tccattacta ttctaatata ggtagagctt gaaaaaatca       300
     ataatattcc accattctct gacactagat cgctctaggg gtctatcctt tatggccaaa       360
     tttgctgata caccatcctt ttactcccag aaaaaaagta aagtagaaag cgtgtttaaa       420
     attggtttag attactaaag aaactatatt tgtataaata agagccaaat cgtgagtttt       480
     aaccgcgttc ttaatataaa ttttactctt tatggtcgtt tcattgaaaa atctcatact       540
     tttaaaataa tttacgcata tttatcgatc tacagcaaat tgtagacgtt tttctccaaa       600
     tattttgata ggaaatctcg gaataacata ttatgaaaat aatacgtgga aaataaattc       660
     gatttcatta cagcagcgta atgccaattt tgatgattgt cattgtgctt tgagaggtct       720
     tctgaaaata aaacatttgt ttttctattg tactttaaat gtgaggtggg gactaaataa       780
     gcaactctat gaaggcatag gttatttctc atattaatac tatatttgca cttccgtcag       840
     gacgtacttt gaacctaaaa attatactca tatcagttac ctttcaattt aaaatatttt       900
     tcttcaaaaa aatcggtgaa aaatgatttt atgatatctg gtaaattgtt gctccaaaaa       960
     taacttgata ttttgcagca ggcttttgat tgatgatgct tccgaagaac aagccttttt      1020
     cgaaaataaa aaatatagat tgtcgaattt tccagaattt ttctaataat cattgatttt      1080
     gataacctcc aaaaatcgac cgttctaaac gttgtgcctt attcgtgcga aatttaatta      1140
     ttttggtggc ttttttatta tcacaatatt gtacaacatt agtcgaacga tgtacagaaa      1200
     accgattgcg atttcattaa taaatataaa aagatattgc atgtacaagg tgtccacttt      1260
     ataaaatgaa cagtcc                                                      1276
//
ID   DNA-9N1_PBa repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   07-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-9N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-140
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 597-597 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 140 BP; 36 A; 29 C; 38 G; 37 T; 0 other;
     gagagggatc cgatagcaca caacgctgat tggccaatta aatataaaat tttctgattg        60
     gtggtccatt ggaaaattcc taagcagcgg ctgatgtgtg tggatgtgtg ctatcgcact       120
     gtgcgctaac gggaccctcc                                                   140
//
ID   DNA-9_AAe   repbase;    DNA;    INV; 1276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1276
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1264-1264 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Present in >8000 copies in the
CC   genome.
CC   TA TSD.
XX
SQ   Sequence 1276 BP; 440 A; 191 C; 171 G; 474 T; 0 other;
     ggactgttca ttttataaag tggacacctt gtttatgcta tatctttttt atttattgat        60
     gaaatcgtaa acggttttct gtgtatcgtt caactattat tctacaatgt tatgaaaata       120
     cagaaactta caaaatgctt tcggttgaag aactaaatag tttttgcaaa aactcctaag       180
     aaaaactgtt cgtcaagttt aagcattatt tttcgcatga aaaaaatcct aaatttaatg       240
     aacaaattgt atgttggtat cctttactat tcaacttaag gtagagcttt taaaaacatc       300
     aataatattc catcagttcc tgacgctgag tcactttagt gatctattcc ttatggtcaa       360
     atttgctgat acaccatctt tttactacca gcaaaaaagt aaagtaataa gcgtgttcaa       420
     aactggttta gattactaaa gaaactatat atgtataaaa aaaagcaaaa tcttgagttt       480
     taaccgcatt cttgggtacc aaatttactc tttatggtcg ttttattgaa aaatcccata       540
     cttttaaaat tatatacgca tgtttatcga tctagagcaa actgtaagcg tttttctcaa       600
     aatattttga taggtagtct cagaataaca cattctgaaa ataatacatg caaaataaat       660
     ttgatttaat tcaagcagtg ttcccaatct tgatgattgt cattgtgctt tgagtggtct       720
     tctgaaaata aattatttgt ttttctattg tgcttaaaat atgacgtggg gactaaatca       780
     gcaactctat gaaggcgtaa gttattttta ttataaatac tatattatta cttccgtctg       840
     gacgtacttt aaaccttaaa attctactca tatcagttcc atttaaattt aagatatttt       900
     tctttaaaaa aaattgataa aaaatgattt tatgatatct gcaaaattgc ttctccaaaa       960
     ataacttgat attttttagc aagcttctaa ttgatgatgc tttctaagta caaccatttt      1020
     ttgaaaataa aaaatataaa ttgtcgaatt ttcctgccga tttttaataa tccttgattt      1080
     tgataacctc caaaaatcga ccgttctaaa cgttgtgcct tattagtgtg aaatcatatt      1140
     attttggtaa cttttttatt accacagcat tgtacaatat tagtcgaacg atgtacagaa      1200
     aaccgatttc gatttcattg ataaattaaa aagatattgc atgtccaaag tgtccacttt      1260
     ataaaatgaa cagtcc                                                      1276
//
ID   DNA-9_BTa   repbase;    DNA;    INV; 147 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-147
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 630-630 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to the consensus. TSDs are uncertain.
XX
SQ   Sequence 147 BP; 39 A; 36 C; 28 G; 44 T; 0 other;
     gagtccacgc caaataagtt tacgcacttt tagactgcga cagaagatcc gccatcttga        60
     ttcttgcatt tactttcaat gctaaactga cgtcacacga tcttctgtcg cagtctaaaa       120
     gtgcgtaaac ttatttggcg tggactc                                           147
//
ID   DNA-9_CQ    repbase;    DNA;    INV; 2039 BP.
XX
AC   .
XX
DT   24-DEC-2010 (Rel. 16.01, Created)
DT   24-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; DNA-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2039
RA   Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 47-47 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. 3 bp TSD.
XX
SQ   Sequence 2039 BP; 646 A; 269 C; 274 G; 849 T; 1 other;
     ggtctattcc cgtactgcag aattctgcaa ttctgcacaa aaacggcagc agagcgttcc        60
     cgtacttttc tgcaacaaaa gtaacttttc tctcaggcag aacttctgca gtgagagagg       120
     tagaagttgc agcaaaaccg ttcccgtact tttctgcaag ctctctcttc tctttcttgt       180
     tgaaaagtta ctgcaatttg gtgtgatgga tgttgagtac acgcttacat aaaatttgca       240
     agttgggtga aatcaagcat tttattatta gttgtaataa taaatgattt tggggtagtt       300
     tttttttatg tctggtttta ttgagaacga tttttttatg ttaacgattt caggcttagt       360
     tcattcatgt aaatgataaa gcgatttttt tagtgttata tttttacctg ataaaaaaga       420
     aacttaagcc atagtattac agcacggcta gtacctcaac aaaaaaaatg tactataaaa       480
     acaaattgtt ttaaaaactt ttaaaagaca catttctttt gagtttaata atttcaaata       540
     aatatttgtt taggaataat ttttgatctt aaattgattt tgaatatact aaatatgtgt       600
     gttaaaataa taggtaaatt taattggcaa ataataaatt gtacctttaa cggtgctacc       660
     aatttgtatt cttatatgaa ccaaaaaaaa ttgatgtaat tttgtcgaaa ttaaaattct       720
     gaaactctga aattctaatt cttaaattct taaattccta aattctcaaa ttcttaaatt       780
     cttaaattcc taaattctta aatttcgcca tcttgaatca taaaaaacac acattttttg       840
     gagtcatatt ttaggttaga aactcaaatt tagaggattt agagattgga aatttkgact       900
     gtttctattt tatttatgtt tgagttttaa aatttttgat tacagaattt tttaatttta       960
     cttatttttg aaattataat ttctttaatt ttctatctta ttatttttaa ctgtagcttt      1020
     tgaatttttg gtgttctgaa ctcataaata ttcaaacttt tgttttttta tttcgatttt      1080
     tttcaacctt tattttttta ttttgaattt ttaaaattaa gattcttttg aaattttaaa      1140
     cattttgaaa tatttagttt ataattattt gaatttttaa gctttgaatt tgtgatttat      1200
     tatttttttt tatttttctg atataattat ttgcattttt aaatttctca aatatctgat      1260
     ttatgttttt ttgaaagttt ctcgatttga aaatattagt ttttttatat ttttaattat      1320
     ggatttctta atttccagat ttcttaattt aagtgtttca aaattttgag tttttgattc      1380
     atttttttaa atttgtcaat ttcgctgcgt caccgttgtt ctttcatgtg acatccagtc      1440
     ataatttatt tatgttatca tgaataatct ttcaaacatt ctgcaattaa aacatgtgtt      1500
     tttggtccct tctatataaa acctttgttt gtcttttttt aatcatattt attaaacgta      1560
     cctgccactc tcatttgtaa aattgtttac ctaatgtaaa aaatttgagt tgtttctaat      1620
     atataatttc tacctaagca taattaattt ctagttactt aataaataat acatccttga      1680
     ttttttaaat aaaatgttgt gctgcataaa aaataatgtc cccgttctag aggtaaactt      1740
     ctttcaatta ctttttttgt gaaccatttt tttaatattt tgaaataatt aaaaaacttt      1800
     aatacccaat ttgagtaaat ccactcaact gtgtacaata ttgcagaaaa agtactggaa      1860
     cgcgctaccc aggcaaaagt tttgccgctt ctctccttgc agaacttctg caaaagagag      1920
     agatgaagag agcgagctga aaagtacggg aacgtgctgc aaaaaagtga cttatgctgg      1980
     ctgcagaatt ctgcagaagc tgcagaaatt ctgcaattct gcaagtacgg gaatagacc       2039
//
ID   DNA-9_LMi   repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.11, Created)
DT   03-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-220
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2886-2886 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.  TSDs are uncertain.
XX
SQ   Sequence 220 BP; 73 A; 46 C; 29 G; 72 T; 0 other;
     tcatttcgaa aaggccatat gtccatcccc accacatttc cattttagtt caaaatctgg        60
     aagtactcga agaaacgcgc attccctgtg aaaagatcat atcctacact attaatctaa       120
     atataaaaga atacatttta cacttcggta ttgaaataca aacagttttt tctttctcct       180
     gaaaaattta ctttggtgga tatggccttt tcgaaatgac                             220
//
ID   DNA-AATT-1_CQ repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-AATT-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-324
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 48-48 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. TSDs are likely AATT.
XX
SQ   Sequence 324 BP; 112 A; 50 C; 56 G; 106 T; 0 other;
     gggtcctaaa atgaagctta gattgctgat attattgttt acagcgataa agcttatttt        60
     tctgagtaca atgaaccttt gtacgaccac aaagagttta aaatggattt ttaaatcaat       120
     tttgaaaaat taacctcgcg gtccttcttg acagaaaagt tcctacttga cagctcgttc       180
     caaggggacc atagttgatc catcgaaaaa atgttgtcta gtcaaaaaaa attttgcatt       240
     aaaatgaaaa aaagtgatca gaaattgttt ttaatcgtgt tatttaccgt tgtacataaa       300
     aattgacata gggctttagt accc                                              324
//
ID   DNA-ATAT-1_CQ repbase;    DNA;    INV; 2155 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-ATAT-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2155
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 49-49 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. TSDs are 4bp; usually ATAT.
XX
SQ   Sequence 2155 BP; 746 A; 360 C; 395 G; 653 T; 1 other;
     gggtcattcc acctgaagtg tgcaagaaaa aatgcaaatt tgaaaattac catctccgat        60
     tctgctcaaa tttggcagag ctgttgagac tatcaaaaca tgcaaaaatc ccgaatttca       120
     tccaaatcgg accaccccct ccatttttgt accctcccaa aaaatcgact ttttggcgat       180
     ttttgagcga aacccctatc ttcaaacgac gataactcag gaaccacaaa tcttagaggg       240
     tcggtcttag actcaatttt gaaggaaatt ggacgtagaa tccatttccg tgatcaaaat       300
     ttagattaaa atatgttttc tacctgtatt gcgcaattga aaactttaaa tggccgtatc       360
     tcaaaacagc cctatttatt ttttaaattt gacctcacca tcgtattccc cgtccgattt       420
     tacataagaa tcacttatcg acagaaagga atatgtttcg ttccagagat atcgaatttt       480
     aaagttttta gtatttgaga ttacctacat tagcttcatt cgccgcatat gctagaagca       540
     ctcgggcgcg ctgatcaata actgctacct ggttatttat tgaaataaga tttcatccca       600
     aataatcatt agcaaattag gcaaaaatgt aatgtacacc gctgtaggaa actgctgtat       660
     acggtgaatt tgtgtgctag cccacaggac agagcaagaa cgacacgcaa tacagggcag       720
     aatggaattc ccgcagagct agcaggaaat tgtaattgat cttgtaagta acacttaaga       780
     aaaagtgtac gatacattat cgtgttaaaa attatgaatt aacatgaata aaactctcgt       840
     gaagcatgat taaggaggag gatttctgga aagtataaaa ctggaaaaag gtaagaaaat       900
     cacaaagatt aatctgattt attatctagt tgtgttatta ttcagttgtg ttgatttcga       960
     caccgtccga acaataatct ttttttttgt ttgtcaatca tttcgaaatc ttggaagacg      1020
     atacagctgc tgtccacatg tatcagaagt atatggtatt gcttttgaaa ttaaatgtac      1080
     cagaattgaa aaaaaaatca tcaattattc agatgaaact ggctcacaat ataaaaatcg      1140
     gtttaatatg atcaatcttt caaaccgtaa ggcagatttt ggggtttttg ctgaatggca      1200
     ctatttcgct accgcacatg gcaaaagctc tagaacccat gagaattatt tcatctacta      1260
     cagccagctc tacatttgtt ctcgcttcaa ataaaagaag aaataaaaga aataatttga      1320
     taaagtggga agaaatgagg aattaggaaa aatatgaaaa taatagaata atgataaatt      1380
     ttcgaaaatt gtattgtaaa aactctgtag catttgcaaa taaatattaa aagttcaaat      1440
     tttacttaat atggttcaat gacactgaga tcaggaaaaa cagtgcatta aaaattaccc      1500
     aataaatatt ccttaaacaa aaaatagatt gttcaaggta ttgattatct caaaatcgta      1560
     taaaattgta aaaataattc atcttacaga acaccaggta gtwattattg atcagcacga      1620
     ctgagtgctt ctagcagatg cggcgagtgt agctaattta ggtaatctca aatactcaaa      1680
     actttaaaat tcgatatctc tggaacgaaa catattcctt tctgtcgata agtgattctt      1740
     atgtaaaatc ggacggggaa tacgatggtg aggtcaaatt taaaaaataa atagggctgt      1800
     tttgagatac ggccatttaa agttttcaat tgcgcaatac aggtagaaaa catattttaa      1860
     tctaaatttt gatcacggaa atggattcta cgtccaattt ccttcaaaat tgagtctaag      1920
     accgaccctc taagatttgt ggttcctgag ttatcgtcgt ttgaagatag gggtttcgct      1980
     caaaaatcgc caaaaagtcg attttttggg agggtacaaa aatggagggg gtggtccgat      2040
     ttggatgaaa ttcgggattt ttgcatgttt tgatagtctc aacagctctg ccaaatttga      2100
     gcagaatcgg agatggtaat tttcaaatgg tgttccgctt caggtggaat gaccc           2155
//
ID   DNA-ATAT-2_CQ repbase;    DNA;    INV; 1079 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-ATAT-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1079
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 50-50 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity. TSDs are 4bp; usually ATAT. ~490-bp TIRs.
XX
SQ   Sequence 1079 BP; 359 A; 182 C; 176 G; 360 T; 2 other;
     gggtcattcc aggtcaactg agtacacttt tggactcgac cttcaccgat ttggaccaaa        60
     cttggaggga acgtttatct atcgatagtt aacagaaatc ccaagtttgg tgctgattgg       120
     accatccctc tatttttggc accgccctct tttttggcga ttttctaaaa aacttttttt       180
     tcttttaatc ataactttgc aactatttga gcaaaagact ttctacaggt tgcattttat       240
     agaaaattgt ccaaggaatt cgataaaaat aaaattttaa cccttaaatg cccactaata       300
     ttatatttta acgttttaag tataaaaatt cagttttgac caattgmtta tatttttatt       360
     tgtttttatt ttatcgccat cgtgttcccc ggacaatttt acataataat caatgtagac       420
     ttcaaactaa aatgaactat tggcgagata cagcgatttt actgaaaaaa gtttgatttt       480
     gcgcwgcact ctgtcctatg aattcaaatc cgaaataagt ttctcacata taaaaaccga       540
     attatgcgag attcattcct ttttgttgaa aagtacacca tgaacttccg agtgctgcgc       600
     aaaatcaaac ttttttcagt aaaatcgctg tatctcgcca atagttcatt ttagtttgaa       660
     gtctacattg attattatgt aaaattgtcc ggggaacacg atggtgataa aataaaacaa       720
     ataaaaatat aagcaattgg tcaaaactga atttttatac ttaaaacgtt aaaatataat       780
     attagtgggc atttaagggt taaaatttta tttttatcga attccttgga caattttcta       840
     taaaatgcaa cctgtagaaa gtcttttgct caaatagttg caaagttatg attaaaagaa       900
     aaaaaagttt tttagaaaat cgccaaaaaa gagggcggtg ccaaaaatag agggatggtc       960
     caatcagcac caaacttggg atttctgtta actatcgata gataaacgtt ccctccaagt      1020
     ttggtccaaa tcggtgaagg tcgagtccaa aagtgtactc agttgacctg gaatgaccc       1079
//
ID   DNA-like-10_Hmel repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon-like element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-951
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           587..306
FT                 /product="DNA-like-10_Hmel_1p"
FT                 /translation="IILTNFLILHYSDQXHYMNPLSQSSLAFSISFHLSRQ
FT                 KPLAMANLILQLLISRAFFVFSFGSFKARPPGSFITYSIKKCNLQNDNDIK
FT                 TFQTQF"
XX
SQ   Sequence 951 BP; 326 A; 117 C; 168 G; 338 T; 2 other;
     gtaagggaga agtggcatga aggagccagg ttttgaaaga gccacttgca atattatagt        60
     agtttaggaa cggattcgtt agaatatttt atttttaaat ggcaatattg atttcccgcc       120
     acccacaaaa attttacagt tcatcggaac caacggacgc cgatacgtcg agttgaagtt       180
     tttggcattc caaagtaagt attttamctc ctttgagttg ttttttagta tttcattgta       240
     aacaaatacg ggtaattgga atatagattg agtttatgta tatatttggc cttgtaactg       300
     cattaaaatt gagtttgaaa agttttgata tcgttgtcat tttggaggtt acattttttt       360
     atagaataag ttatgaaaga gccgggtgga cgggccttga aagagccgaa agaaaaaacg       420
     aaaaaggccc gagaaatcag taattgaaga attaaattgg ccatggccaa tggtttctgc       480
     ctagataagt ggaaagaaat tgaaaatgcg agtgatgatt ggctcaaagg attcatataa       540
     tgtkattggt ctgaataatg taagattaaa aagtttgtta gaattatcta cttaaaatga       600
     ctgatagaat taaaaaaaca ttacttttta ataagaatta ttaaatcgtt tttatttaat       660
     attgtttacc ataattttca ctgttatacc tcataatata agactggctc tttcataact       720
     tttaatggct ctttcaatac cgaaatgtta tgaaagagcc aaatgacaca tttttttaaa       780
     atgaatattt tattgattaa ttattgtatt taagggttat ttcgtacgaa attacctagt       840
     ttaataaata aataataatt tgaggaaaaa aaatcttaat ttctttaatt aaaagtatat       900
     ttttttgctt catttagtaa actggctctt tcatgccact tctcccttac a                951
//
ID   DNA-like-11_Hmel repbase;    DNA;    INV; 2271 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   a DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-11_Hmel.
XX
NM   DNA-like-11_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2271
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1684..917
FT                 /product="DNA-like-11_Hmel_1p"
FT                 /translation="VNLILISRARQYFTPKHRLALNRAQVXLHMEYSSHLW
FT                 AGASSCNXLTHLIHTHXIQRRAVRNVGAPMMCERLDTFALCRDVSSLCFLY
FT                 CIYYGECSAEMFDLLPAAEFSNRTVRHKLKYHPHHLDTCHSTSVXFGTNFL
FT                 PRATQLWNSLPMAVFSGXYDMXTFKXHVFSFFSLMLHEVVGGGGHLRLGNP
FT                 YARLPYLFFNKQGGFSXLKLIXTYLXSXILXSXXTNLXXLSIENEIAENID
FT                 FECLIKEFADRKAII"
XX
SQ   Sequence 2271 BP; 747 A; 404 C; 419 G; 678 T; 23 other;
     cgtcggtgcg cctgccaaaa ccgttatgtg tatttttttn atttttttta ttcgataaat        60
     agcattaaaa tagtactctg catagcctac aaaaacaaat atgtagtaat tccgtctaga       120
     agtcgattta acaaaatcga tatgtgcaca taatttttat ttttggcaat gacaaattcg       180
     ttatgtgcag ttatgatcca gcagcaatga ttcgatgagg aatgtaatac attatgtaat       240
     gtaatacatt aaggggaacc gtcactcgag ccctacctta tcggtatata atgaggcaga       300
     gctcaaatct cagccactgc cgatagaaat agcagattca gagcgagcag gtatagtatt       360
     ggttgaaaat acgactcatt tgtacctaga tgaagctact ggagaatttg taaggcggaa       420
     gtcagccgaa ctcggaactg gtcacttcat actagataaa taagctggag aaaacttcaa       480
     ggagatggat attgatgaaa tatacaacaa taaaaaaagt tcgactttaa tacgaagcag       540
     agagttatag gaaaggcgta cctaatacaa ttgtagaaga cacttaacta acgatacttt       600
     taattcatgg ataaaggaat tgtatgccac caaaccagaa tcatcttctg aaagtaaacc       660
     aagaaatcct tcttgtaagt cagcttctgt aagaagcctg tgagaatggt tttaggctta       720
     gggccaaaag ttcaagttta atcattactg cagagcaagc acatcacgac acacatgttt       780
     gaagtataca gtgccggttt tagcactacc ggcgccctgg gcgaagtttt ttcggcgccc       840
     cataactaca attcaataac atccaaaaaa gagaatgggt acaatgaaat aaccatttat       900
     ttaaaaaaaa tatttaaatt attgcctttc tatctgcaaa ctcttttatt aggcattcaa       960
     agtctatgtt ttctgcaatt tcattttcga ttgataaant tnttaagttt gtnaatntag      1020
     atngcaagat tgncgatngc agatangtcc ntattagctt cagnttggaa aaccctcctt      1080
     gtttattgaa aaaaagataa ggcaaacgag cgtacgggtt acctaatcgt aagtgaccac      1140
     caccgccgac gacctcgtgt aacatcagag aaaaaaagga gaaaacgtgg nttttgaang      1200
     tnnccatgtc gtatnaacct gaaaacactg ccataggtag gctattccac agttgcgtgg      1260
     cgcgtggaag gaagttcgta ccaaaccnca cagaagtgga gtggcacgta tccagatgat      1320
     gtggatgata cttcagtttg tgacgtactg tgcggttaga aaattcggcg gcaggtaaca      1380
     ggtcaaacat ttctgcagaa cactccccgt aataaatgca gtanagaaag cacagcgagg      1440
     agacatctct gcacaaagcg aatgtgtcaa gcctttcaca catcattggg gctccaacgt      1500
     tccgtacggc tctacgttgt atannatgcg tatgtatcaa atgggtcaan ctgttacatg      1560
     atgatgcacc agcccagaga tgagaagagt actccatatg aagcngaacc tgggccctat      1620
     tcagggccaa tcggtgtttt ggcgtgaaat actgtcgcgc tctgcttatt aaaattaaat      1680
     ttacctagtt attnaaggga taagcattaa aggcttagtc tatctataaa cctttcctaa      1740
     ccactttcta acaacccttc gagttttcta ttaaacattt ttttgttaat tattattagt      1800
     attaataacc ataagattaa tataccagta ccatactgtt ttatcgttat cagattaact      1860
     gttttcacgt aaaaaagggc caaaccaaca attccgtacg tttatcatta ctaatcatta      1920
     gtatacatat ttgttttaag tttaatacat tgttgttatt ctcataataa cattaaataa      1980
     atccgattat gttcttttac aaaactgata tgtgcatatt tttcacttgt aagaaatggt      2040
     ggttacaaga caaatctgat atgtgcatca aaatggttaa aaaaaattat tgcagatgaa      2100
     gggtacattt tatcattttc gcttgtatct cagttcaaac ataacatatt ttgtcaccat      2160
     actgcattta taattttttg ataaagctat tatttaataa ataagatagt tttttgtctc      2220
     tcctgaaaac ttgactaaaa acacatagcg gttttggcaa gcgcaacgac g               2271
//
ID   DNA-like-13_Hmel repbase;    DNA;    INV; 2920 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-13_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2920
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1929..2174
FT                 /product="DNA-like-13_Hmel_1p"
FT                 /translation="IDKITLHFSLRFRSYSFFFNFNCVSLINDFFCNIYVN
FT                 KAPRRESKDQLALMQPKHTKPTKRTVKIIIPSPRIIPALQIIMRE"
XX
SQ   Sequence 2920 BP; 978 A; 452 C; 434 G; 1017 T; 39 other;
     gggtcattct agcgaaaata cgaaattagg gtttcaaaaa tttatgaaaa atatttgcaa        60
     tatttaacta ttcttttctg tgaattttat agtactagtg taactaatta tcaatgatat       120
     agtggtcccc aaaataagtg ggttttcatg ggataaagag ggtagttaaa aaaattgaga       180
     atgagggaat gatgcggtac gtgagggaat gagtgttaat atatttatga taattaagta       240
     ctaaartaca tgtttaatga caaaagaaat ctcgtattat actttaaata acaatgaaaa       300
     agtaacawtt acttawtaat tctyctcaca aatctaataa tgttattttt tgtacttaaa       360
     acattgtctt ttcttttgaa aaccacagcg ttttaagtat tgcgaatcgc actattgatt       420
     tatttaaaat tacttacaaa ctaataaagt gaaaggaaaa gtaccattct tgatattaaa       480
     taaaaagggc aattcgccaa aacaatgaaa atcagtttca aaaacaaaag agagaatgat       540
     aaaatattaa atgtaaatat caagaatctt tctttgatca actcagttaa tcaccctttt       600
     ccatttccct tacgaagtag catcctcttt ttattattgt tggaggctga atcttytgta       660
     atayatcatt ccaattatac agttgttcat ctgttaatgt cggccatttc caagttatag       720
     aacctctagt catgtgcgct ttcaaaaatt tcttcacaaa ctgaagaaat ttgtccatct       780
     atgctccata tcatctatgt ctatrgvtaa gtcttaacrt cccatttaat actttttaca       840
     ccsbtttttt ataaatcttg tattgttggt tgcytstaar agatcrctct tagcgataag       900
     gccgccattg cacattgatc ttataatatg tactgtgtaa atcaaatgta taatccaatt       960
     gcaaatgtgc aataragtgt tattattttt attattaata ataacatggt ccagattata      1020
     atatatagat aatatmsska tattatctat atattataat ctgbatctgt tcctataaca      1080
     ttctcatcag ggatatcttt tgaacattgc ttactatccg atgcactctg ggtttgaatt      1140
     ttacatacca gaattattct tggaagacga gtaataccct taatgataat gactacactt      1200
     gccagtgcaa tcgttgcacg aaagatttat gaactcgaga tttttttgag ttccacgaaa      1260
     tgcagcdatt gattctgata ggcttactaa attttctatc cctacgatat cagcggtggt      1320
     tacttcaatt aatattattg aaggacatct ttcgagtaat atatattttt gagtttcatg      1380
     aaattcacgg tatcaaagcc ttcagccaca gctctatcgg cagttctttt taaaattcct      1440
     cccacaccat cgggcgcaca ttttccatgg cctggttacg aataatgcca tgaaaataat      1500
     ctcgttctcg gatataaatt atttatatgt cgagatacaa tgtgaaaaat waacttgttc      1560
     ttgtactgat taactggact atcactcaag atgtgaatta tatgaatgtt caaatcttag      1620
     tttttaagcc attcaaatta tcgtgtcggt tatttttaga tagagagcta atagtgtgga      1680
     ctttgacagc accattgcga cgtaaataaa gtacacntgt atgaagagta ctttgttgcc      1740
     tagtaacgcc ataaagaact tgaattctta cacagcacac cttttttatc cctatatgtc      1800
     aacaatccgt ataggtttga cwawtttttt tttccaactc tttcgtttta gtcttttttc      1860
     ccttgaactc atttcaggta caggttttac ttgtcctttt ttcttactct ttcgcgaagt      1920
     ctttctaaat tgataagata actcttcatt tttctttacg tttccgatca tactctttct      1980
     ttttcaattt taattgtgtg tcattaatta atgatttttt ttgcaatatt tatgttaata      2040
     aagctccaag acgagaaagc aaagaccaat tagcgttaat gcagccaaaa cacacaaagc      2100
     ctacaaagcg cacggttaaa ataatcattc cctcacctcg catcattccc gcactacaga      2160
     taattatgag ggaatgacgg tgagggaatg acgaaattaa acattaccgc caaaaacgca      2220
     cataaaaatg cattctttcg tattgcattt tatggtcacg ttattagtta ccaaaaccaa      2280
     cgttaacgtt gattagttaa ttagttaaaa ttgattacct tatttttata agatgtgatg      2340
     taatgacggc caraaatgta acttagtaaa ttatgaacta aatcttttct taatagaaac      2400
     tatgtgcatg cahaagatga attcrctata gtaaattatt agcagcactg ccaactrtca      2460
     aaaacwaatg agtgcgttaa tgtaattyaa ataacacntt aaaaaatggg ctgtgaacac      2520
     aagtgtgaag gaatgattat tgtttttggg acaaagtaaa acaaaagcat aagtttcaat      2580
     tayctttayt tatttttttg taattatgaa tattttaaga aaaccacttt atattaagcg      2640
     atcagtaaaa gtctgacata aaatttagcg aaatgtatca atttagcgac catagagtat      2700
     ttgaatctgg agtttgggac atagcgaggg aatgtttwtc tgatgttaac atagggaaaa      2760
     gaaatatcag atatctwgtt tactagaaag tcttataggt attatgtatg cactattgca      2820
     tacttagtaa caaaataata ataattgctt aaatttcata actacttaga aaaaatcaat      2880
     taggacatga atttcgtatt ttcgydagaa tgacccatat                            2920
//
ID   DNA-like-14_Hmel repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-14_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1648
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           474..674
FT                 /product="DNA-like-14_Hmel_1p"
FT                 /translation="KKNFWFRIPQYGYQIQELNTRISKRYIMIIITIMNPN
FT                 KNLKNKKIFIKKQTPRLHKSEKKLTSPIVY"
XX
SQ   Sequence 1648 BP; 612 A; 235 C; 241 G; 555 T; 5 other;
     cgcactatgg gaaatcgagg tctgtatcag atcaaaaatc gataactttt ttatttgtta        60
     agataaacaa ttgaattttt gcacaagcat aaagtatgaa atagtgcgtt aggtgacgtt       120
     cagatattat acttttattg gagaatatat atataaaaaa ataatgaaaa gaaaagtttt       180
     cagtaaataa tagtaaaaat taaaggaata atagtaaaaa tgtattatta aattagttta       240
     ttattattcc cgactgctaa ggaagagtta tgtttttcgc gcgtattttg tatgtatgta       300
     tgtacgtatg tatgtatgca atattcttta ttaccttgta tctccagaac cgctgaacgg       360
     atttacataa ttgaggtatc gttatattcg ctttagcagc ccaagtgttc ttagataggt       420
     gacgttaaaa aataataatc atggcggctg tgggacgcca ttggacttag tgaaaaaaaa       480
     atttttggtt tcgaatacca caatatgggt atcaaattca agagctcaac acgaggattt       540
     caaaaaggta tatcatgatt atcattacca taatgaatcc taacaaaaat ttgaaaaata       600
     aaaaaatatt tattaaaaaa caaacacccc gactgcataa atctgaaaag aaattaacaa       660
     gcccaatagt ttattaggat gaacagtcgg gacctataag taattcttca atcaataaaa       720
     tctttaccag gaacctcaaa taatttaaag aggtgctaat tcttctccta ttgaacgtaa       780
     accctgcacc ttcaatgtat gggagtaata attcacgctt ggaacactaa aagtattcgt       840
     cattttgaaa tttagtgaaa acacttaata atcaaacgtc tgttagtaat tttattacta       900
     atttgtaata gtttttttaa attaattcac tcttcatata atttcataaa tgagggtagt       960
     gtgaataaat gattgtgcaa aatgtgtgca aaatgaagat aaaacgtcct tttatcaata      1020
     aataacaata attttatgga aatttaccgc aatctaatca attaaatagt aaaacattag      1080
     aaactacaat agatagagtt ttcgtgtccc ctgacttgta tcrtagtttt cgtgataact      1140
     tctcagtctg caggtctctg cagctgattt ttgataaats ttatttatga atatstggac      1200
     tataaaacaa yatcaaatat aacgcgtcgg gagacgtcgg taactgttaa aartctcgat      1260
     gaactttaaa cacgtacctt ttttctcttc acttattgtt aatatttttt ataaaaatat      1320
     agtcacgata tccacaatat aataattgtt ttaaaatcta catactatgg gctcttcaaa      1380
     aatatataac actttatacc tatttgcaca tttttttaag gaaattatgt ttaaagtatc      1440
     aaagtgaaca acctgaaata gacattctca cgaatgacaa tttttcacga tgaataaata      1500
     tatattccaa atgtaattca cgaaaaaata attcataaca ttaaagttcc actcttatac      1560
     tatttattta aaaaaaaata gtgcgtcagg gacgactttg aaaaaatgac ttttgatctg      1620
     ccgttgttct accattgtcc atagtgcg                                         1648
//
ID   DNA-like-1_Hmel repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-like-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-248
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           246..100
FT                 /product="DNA-like-1_Hmel_1p"
FT                 /translation="TVYFESGVSPFSFVSRKLKVSMSMIMQFHLPTDFKLF
FT                 KTWVFFEKLNTD"
XX
SQ   Sequence 248 BP; 90 A; 41 C; 34 G; 83 T; 0 other;
     ggaccgttta ttttgaaagt ggtgtaagtc catttttgag aaaaatgagc tatcacgtaa        60
     ttcatgctta atttaatgta atttttttat atataactag tccgtgttta atttctcaaa       120
     aaaaacccat gttttgaaca acttaaaatc ggtcggtaaa tgaaattgca taatcatcga       180
     catactaacc tttaattttc tcgaaacaaa agaaaatgga cttacaccac tctcaaaata       240
     aacggtcc                                                                248
//
ID   DNA-like-3_Hmel repbase;    DNA;    INV; 1600 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a piggyBac transposon from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; DNA-like-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1600
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-1600
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [1] (Consensus)
XX
CC   [2] classification as piggyBac. ~98% identical to consensus. TTAA
CC   TSD. 13bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..1211
FT                 /product="DNA-like-3_Hmel_1p"
FT                 /translation="SKIPLFLLFLGRNLNNDQILQILGDGNLSEIEDFHED
FT                 DDDFAPNVMGDLNDLFCGMEPEQEPELDPERYVDVSAPKVVERYNQHMGGV
FT                 DVLDQQMEYYRTFIKTKKWTLKVLIHFLDLAIVNSWRLYRNDCQANNLTRK
FT                 DILPLLDFRLNIADGLSSTPSRERRMSSDTEYNPPMENEYPIRRXYRPADK
FT                 PSDAKRYDGYDHFPVFDEIKAPRMCRHESCGSRTKIRCEKCDTYLCIARGK
FT                 DCFKSYHQKNNFNSR"
XX
SQ   Sequence 1600 BP; 508 A; 275 C; 316 G; 500 T; 1 other;
     ccctttacac ccgcgcttat acgagcgtga gtttcacttt aaaaaaattc tggcgccaaa        60
     ccatttacta ttttgcgaac gcaaccggcc tcgatcgtcc gtgaggatgt ctcgatgcga       120
     catgtaaatc gcggggtgcg ggcgggcgat cagtgtcctg tgagactcaa tgggagatgt       180
     cggcgttttt tgaccctcgc agcgtcacgg gtaagtactt gtctcgcata ttatttgttc       240
     agtaatgtat tatattattt agtaaattac aagctaaata aacaccaaat aagtgagtta       300
     ttttaatttg attgatttcg ttatgatttc gatacaattt attagtaaag tttgtctgct       360
     acgatcgtgt ggcttcggtt gtacatgcat attaaaaaat ttaaacaacg taaccgttat       420
     ttgtcggttt tgcctggatt tagtcaaaaa taccattgtt tttattgttt ttaggacgga       480
     acttaaataa cgatcaaata ttgcaaattt tgggcgatgg caacctttcc gaaattgagg       540
     attttcatga agacgacgat gattttgcac caaatgtcat gggtgacctc aacgacttat       600
     tctgtggcat ggaacctgaa caagaacctg agctagatcc tgagagatac gtggacgttt       660
     ctgctccgaa agtagttgag aggtacaatc agcacatggg tggggtggac gtactcgatc       720
     agcagatgga gtactataga acttttatta aaactaaaaa atggacgttg aaggtactca       780
     tccactttct tgatttggcc attgtaaact cttggcggct gtatcgcaat gattgtcaag       840
     caaataattt aaccaggaaa gacattttac ccttgttgga ttttcgtttg aacatagctg       900
     acggattatc gagtacccca tccagagaac gccgaatgtc aagtgatact gaatataatc       960
     caccaatgga aaatgagtat cctattagaa gacnctacag accggcagac aaaccctctg      1020
     atgcaaaaag atatgatggg tacgatcact ttccagtgtt tgacgaaata aaagctccaa      1080
     gaatgtgtcg tcatgaatct tgtggcagtc gcacgaagat acgatgcgaa aaatgtgata      1140
     cgtatctatg tattgcacgt ggaaaagact gttttaaatc gtatcaccaa aaaaataatt      1200
     ttaatagtcg ttaacaaagt acaaactagt taagttttga aagtttttgt taaaatttat      1260
     aaactttgtc gtacaaatgt tgatttaagg tttctatcgt aagttttttt atatagactg      1320
     acaacaaaat gactgattaa agtactaagc tcctaaatga ataaaaaaat gttttattaa      1380
     ttatccaaac accaagttaa acgttcaatt tacattactc tcacgatctt gagttgatca      1440
     agttgtacct gaaactcact atcgtgaggg ttaactcctg gattaactat aaaccaaatt      1500
     ttttttttac tatttttttc taactattta gactatgtag aaagcaataa aaactatgac      1560
     atagaggatt tcgaaaaaaa ataccttcgg gtgtaaaggg                            1600
//
ID   DNA-like-6_Hmel repbase;    DNA;    INV; 2819 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2819
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2564..2205
FT                 /product="DNA-like-6_Hmel_1p"
FT                 /translation="GEPSLEPCATDFFGTELLEDQVEYVPSTSTLSVYNET
FT                 ELKSQRLPMEIADSERAGIVLVENTTHLYLDKATGEFVSRKSAELGTGHFI
FT                 LDKQAGENXKEMDIDEIYNNKKSATLIRSREL"
XX
SQ   Sequence 2819 BP; 826 A; 517 C; 523 G; 951 T; 2 other;
     ggtcgttgcg cttgccaaaa ccgctatgtg tttttagtca agttttcagg agagacaaaa        60
     aactatctta tttattaaat aatagcttta tcaaaaaatt ataaatgcaa tatggtgaca       120
     aaatatatta tgtttgaact gagatacaag cgaaaatgat aaaatgtacc cttcatctgt       180
     aataattttt tttaaccatt ttgatgcaca tatcagaatt gtcttgtaac caccatttct       240
     tacaagtgaa aaatatgcac atatcagttt tgtaaaagaa cataatcgga tttatttagt       300
     gttattatga ggataacaaa aatgtattaa acttaaaaca aatatgtata ctaatgatta       360
     gtaatgataa acgtaaggaa ttgtggtttg gcgctttttt acgtgaaaat ggttaatctg       420
     ataacgataa aacagtacgg tacgttatat tagtcctatg gttattaata ctaataataa       480
     ttaacaaaaa aatgtttaat agaaaactcg aagggttgtt agaaagtggt taggaaaggt       540
     ttatagatag actaagcctt taatgtttat cccttaaata actaggtaaa tttgaagtaa       600
     ataaaaagcg aattcaataa gtattgcaat aaactttatc aagataacta aaactaaatt       660
     taagtaacac mttcgctttc gtgccgcaca tatacatgga cgtatttatc gttactacag       720
     tacatctctt tgcctcgaac tcgaatatgg atgaccaagg aatagcgccg cgcgcaaacc       780
     cgtgccagag cttaatgcct gaaattaagt tcagctaaaa agctgttagg cgagctctgt       840
     cttctttggt catccacaag tcgagtgggt cagatgacat ctctccttta gtgctcctga       900
     gctgtcacct gtgctaatgg gtctgttttg gcactcttat tcaatcggta tagtcccaga       960
     cttgtggaag agcgctctta tccacccgat ctccaagaaa ggcgatggtt ccgatccatc      1020
     taactacagg cctattgcca ccctggctct tgaaagttat ggagagcatt atcaatggcc      1080
     agcttttgat ttaactggag aatcactgat tgattaacga cagtcaatat ggcttccgcc      1140
     atggtcgctc aaccagtgac cttctggttt acctaatcca ccggtaggct acggctattg      1200
     aaagcaagga atagggtctg gcagttagtt tggacatggc gaaggtcttc gatcgcgtgt      1260
     ggcatgaggc gctccttgca atacttccat cctatggctt tccgagagtt tatgcaagtg      1320
     gatcgctagc tttctcactg ggtgcagcct caaggtaact gttgacggtt tttgcttgga      1380
     gtacatgccc gtgaacgctg tcccccaagg ctgtgtgctg tcccctacgc tgtttcttca      1440
     gattatcaat gacatgttag aggattctag aatgtgcgtt cttcttgttt tggtatgctt      1500
     tttctttctt tgtgtacctc atattcttct agtgacaaat tttctttgaa tacggtgcac      1560
     atgtcaaatt aaaactttat cagcttccaa tttaatgtaa atagttctct ttattgtatc      1620
     ctcctcattt ttctggcttc actttttaat cgacttcagt gaagaggacg ttatcaagtc      1680
     gagtgtattt tttttatatt tgttacctca gaacttttga ctggtcttta ctttgatttg      1740
     gtctatttct gacaatttta tccatgacaa aatcatataa gtcttaaatt tgcattaagt      1800
     atgtgcgcag caaatggaag aataactcaa tatcatgcta accgatttcg atgattcttt      1860
     ttttattgga aaggatacac ttcaaggata gtttgatgag agtttggtta tgttctaatt      1920
     atgggatcca gtggaagtcg gtttttttta attgttatac ttattgtgta cttcaaacat      1980
     gtgtgtcgtg cacttgctct gcagtaatga ttaaacttga actcttggca ataagcctaa      2040
     aaccattctc acaggcttct tacagaagct gacttacaag aaggatttct tggtttactt      2100
     tcagaagatg attctggttt ggtggcatac aattgcttaa cccatgtatt aaaagtatcg      2160
     ttagttaagt gtcttctaca attgtattaa gtacgccttt cctataactc tctgcttcgt      2220
     attaaagtcg cgcttttttt attgttgtat atttcatcaa tatccatctc cttdaaattt      2280
     tctccagctt gtttatctag tatgaagtga ccagttccga gttcggctga cttccggctt      2340
     acaaattctc cagtagcttt atctaggtac aaatgagtcg tattttcaac caatactata      2400
     cctgctcgct ctgaatctgc tatttccatc ggcagtcgct gagatttgag ctctgtctca      2460
     ttatataccg ataaggtaga agtggaaggg acatactcaa cctgatcctc caaaagttct      2520
     gtaccaaaaa aatctgtagc acaaggctcg agtgacggtt ccccttaatg tattacatta      2580
     cataatgtaa taacattccg catcggatca ttgctgctgg gtcataactg cacataacga      2640
     atttgtcatt gccaaaaata aaaatgaagt gcacatatcg attttgttaa atcgacttcc      2700
     agacggaaat actatatatt tgtttttgta ggctatgcag agtactattt taatgctatt      2760
     tatcgaataa aaaaaaaatc aaaaaaatac acataacggt tttggcaggc gcaccgacg       2819
//
ID   DNA-like-7_Hmel repbase;    DNA;    INV; 2172 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2172
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1125..1442
FT                 /product="DNA-like-7_Hmel_1p"
FT                 /translation="WFTSQNXNVIVSNALPHFFRKRPYSNGSGFSSLHNRK
FT                 LKHPEIFLYSQYSSVTKEASLNPFPYEVVTCDHTFFKDYSIKSNLIYDTIR
FT                 PGRGAGTECGKVVLLKTN"
XX
SQ   Sequence 2172 BP; 773 A; 353 C; 337 G; 700 T; 9 other;
     cgtcggggat agtgcaaatc cgcgtaacta gcattggata atttcgcgta actgacattt        60
     gtagctaaat ctcaatttca cggccattcg acgtaagatc ccgattggca gcctcctgtt       120
     ngatgggatt tttttttcga ccaatataaa gctagatttc gcctaaaaac aatactgcgt       180
     atctataatc gacaattaac agtaccgcgt atgtcttcaa gtgtcattag aagtgtattt       240
     tgtagtttat ttttgctgtc aaactccgtc aaaacacatt aaaacaagta gagcttacta       300
     aagaaatcgc tggcacgctc gaaacgtcat aaattaagaa ctgaactgaa ctgaactaaa       360
     gaaatcgaag ctttatcttg ttgcgacaca accactttta gatagataaa tctctttatt       420
     gcatacatat aggaaataaa atattttaca agagaaatat agaccaatat tgaaaacaga       480
     taaaaataaa aacacaacac aataaagaca tttagcgcat agaggcagta tgcaaaggcg       540
     accttatcac tactagtgat ctcttacaag tataattaaa taacaataag atttatttgt       600
     atctattcct ttttactttt cacttttagt gcattctgct tagaaagtcc caaattactg       660
     tctattttct gaaataacca atgttgcatc ggtagcttca acatcaacat gtagcaataa       720
     tgatttgttt cctgaaagaa tcctggaacg tgaggctgcc attgaggctg aaaaaagatg       780
     cangtgatct atgttgttca tataaagctg gcaaaattac ttaacaaata tatcaacaac       840
     atgtgtcacg taaagattta gcaaacgaga aaagacttta gacaaagagg ctgcaaaaat       900
     ggaaagcttc acgtagtaac agccgattta caagctgtga aattatgtcc atttttgaaa       960
     gctagtgcat tgtattttaa aatgaagtta attgtccata taaaacgcta ttggtttaat      1020
     gagacaacat cacatttaaa agcttccaca tgcacttcct tttttgtcga ttatttgaag      1080
     aaaatcttag aagagagtac taaaaacgtc gtaatttata ttgatggttt acatcacaaa      1140
     acanaaacgt catagtttca aacgcacttc cgcatttttt tagaaaaaga ccatactcaa      1200
     atggaagtgg attcagttca ctacataata gaaagttaaa acatccggaa atatttttat      1260
     atagtcaata ctcctcagtt accaaagaag ctagcctgaa tccatttcca tatgaagtag      1320
     taacgtgtga ccacactttt ttcaaggatt atagcattaa aagtaatctt atatatgata      1380
     caatccgccc tggaagaggg gctggtacag agtgcggcaa agtggtttta ttgaaaacaa      1440
     actgaactaa tttcagctat tactacaaat attaaaaaan tattacccca tttattcctt      1500
     attcactata ctttattctt atctaagaaa atgactgnga cataaagttt atttatataa      1560
     ggtacctgaa gaatctatta ttgttattca tatattaaat atataacagt aatttgcttt      1620
     taaatttact gataatatnt tttctgaaaa agctcttggt cttttgtgta ttagtacttt      1680
     gaaattattt atacttgtaa tacttaaagt tgtataaaag gctgataaag aatcgctcaa      1740
     agctgattaa aaagtgttat tgatagtgta ttttcaattt tatatttaag ggggattgnt      1800
     taaaaaatac attaattaat aaataataaa atcttcattt tattattaaa tattatttgg      1860
     aacattaatt gcacgtttga ttttaaaacc gtgtaactaa ctgtcaggtt tcaatttaat      1920
     aagatcgtgg tcaaatcaaa tcagcgtaag tggcgtgtcg cttaaattaa ccacttgtta      1980
     accactgtaa aggattgtat atgacaaaaa tatgtagaaa ataccaatta tnattctcta      2040
     tgttaaaatg agaccacttg gacttaaatt aacgatgtta taaagtttta acctcctcct      2100
     gtaaaatctg atcaaatgca gatacgcgct ccccacctgt ggtanatacg cggttctgca      2160
     ctatccccga cg                                                          2172
//
ID   DNA-like-8_Hmel repbase;    DNA;    INV; 1369 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1369
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..209
FT                 /product="DNA-like-8_Hmel_1p"
FT                 /translation="LANMLLIMGSTRGKLRRKRILMSAHRHPLTPDRFPVR
FT                 ARGESLRGVTGLRYSRVQRYQFITMKYEYNII"
XX
SQ   Sequence 1369 BP; 504 A; 201 C; 220 G; 439 T; 5 other;
     gtctggcaaa tatgttattg ataatgggaa gcacgcgcgg caaattgcgc agaaagcgta        60
     ttttgatgtc tgcacataga cacccgctca cgccggaccg attccccgta agggctcgcg       120
     gggaatcgtt gcggggtgtg accgggctac ggtacagtcg agtgcaacgc tatcagttca       180
     ttactatgaa atatgaatat aatatcatat gatagcatca tatatacgga atggcgtagt       240
     agagcatatt tatctagtaa tattataaaa attagtaaaa aacaccaaag caacatgcaa       300
     aatgaagata tggtaaattg aaaaattaaa taaaaaactg aattaaatta ttataaatga       360
     ggccacatac aaatcttctc aatccaaatt caataaaaaa agtaaaattt aaaaagtaaa       420
     tttaatatat aaaacawgca aacaaataca agattttggc gttaggcaac atgcaaaatc       480
     aacttatggg taagtaaata wttttttwaa taatggaaat agaggtctta acaaataaat       540
     tatgttaata aattatatct ccaaattaaa tcaaaatttt attaccgttt tatttaaaac       600
     gttaattaat gcatgcaaga aagtaaaaaa taaaaattga caaataataa agcaaataat       660
     caaaacggta aaaggcattt ttgtttacaa ttaattatat tcttgtttga acaatatagt       720
     gtgagctcga twgtaccttt aaagatgtgt gggtgcgaat ttcctgtaag gacgtagcgc       780
     tcacactgac gcaaatggca aactatggca aagggatacc gcactctcat tttttgtacc       840
     tcaaaattta ttgaaataat ttacccaata ttattttctt ttatataatc tttaagaagt       900
     ttaaatattg ccagatattt ctttattcat attgcatagt ttataagctt gtattatgca       960
     cactgaatgt ttatgttgta cataagtgtg tatatagtat atacacatat acgtaaatat      1020
     catgtgccat tagttatata agcagaagct tagaattgat taattattta ttgactcaaa      1080
     aatgttatta tacttttcgg gctagtcttg attttattct cgacaacaat gtatggaaca      1140
     gctgattatt ttgcgatatt tagatatcct cataaaattt tcgttttgta taatttacta      1200
     caacataaac atgatcagat attttaatta tcgtataggt aaatgtgatt tgctaagcgt      1260
     gaggtaaaac aacataacag ggtaacactg atcgaacgtt ctctgcgcat acrtatactg      1320
     cgcaatttac cgcgcgtgct tcccattatc aataacatat ttgccagac                  1369
//
ID   DNA-like-9_Hmel repbase;    DNA;    INV; 1736 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a DNA-like transposon from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; DNA-like-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1736
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           700..392
FT                 /product="DNA-like-9_Hmel_1p"
FT                 /translation="KENFNLSSSDVQTIMNNIQKFFLYNSSHYVIRTCRKC
FT                 RKIRIISDTLNTAQLYVNKCNKYYMPPSVHKILIHGAQIIQYYAILPIGQL
FT                 SEDAQEARNKDYKSI"
XX
SQ   Sequence 1736 BP; 636 A; 233 C; 247 G; 620 T; 0 other;
     cggcgcacag tgggacggaa tgacccgctt cgtgtcaaaa atccgtaact cattcagttt        60
     tcatcgcaaa gtgttgaaat tttgcatata tatacttgaa tatatttgct atcaatgaca       120
     taaaatagat attaataaaa gtcatgagtt atttaataaa aaaatttcaa agttagaaat       180
     tgtcataaat aagagcttat taagatgttt aaaaattatt attattttta aatcattaaa       240
     agtaacttaa gtatactgaa tctaggctgt taaacaaaaa actgatgtat catatgtaat       300
     ataaaaatat tttttataaa aatagtgacg taaacaagga atttattctg tgatttgcag       360
     aagttcttta gcttcgtcaa acagttcgtt agatactttt gtaatcctta tttcttgctt       420
     cctgagcgtc ttcagaaagt tgcccaatag gaagaattgc atagtactgt ataatttgag       480
     ctccatgtat aagaatttta tgcaccgaag gaggcatgta atacttgtta catttgttaa       540
     catacaattg cgctgtatta agtgtatcac ttatgattcg aatttttcga catttacggc       600
     aagtcctgat gacatagtgt gaagaattat ataaaaaaaa tttttgaatg ttgttcatta       660
     tagtttgtac gtctgatgac gacaaattga agttctcctt ttaaaagttt tctatttcag       720
     aagtatttct cccttcaatt ataaaagtgc ataagttacg tctactgcaa acgaattcac       780
     tcatgttgca caaaatatat gtatatcttt taataagtta acagtattag aaacaatgcg       840
     gaaaagtccg gttactctaa tgaaagcaac tagttataat tggtcttttt atacttgtcc       900
     agaaaagtgt tttgtgcaaa accacatcaa attaattaaa tattttattt tgtattcaca       960
     taatattgtt tattcacata aaaaatgata attttgtcat gttcgtggtt ggaatgacca      1020
     caaaaaatgt tatatttcaa aacaaatatg ctctttcaaa aatagacata ttattatttt      1080
     ccatgttaaa ataaacattc tgatagtttt tttctactta tagaacaaaa aagaactaaa      1140
     taggacgcca attatttaaa ataaaagcag tattcatgaa atatcaaaaa ttgacatttt      1200
     actacatttt ggtttttttg ctctaaatca aaatggcgca aatatgcgca aaattttatt      1260
     ctttccccta attcttgaat agttcttgta tacatacata tagttttctc ggcagcggca      1320
     gccagcggca acaatgaaaa ctccaattga aaatatgaaa atgttaaaat ataacacttc      1380
     taaaaatttt aagatatctt tttaaatata ggtttttatt atacactaat tatattttct      1440
     taaagaagaa acaatgagct ttataaaaat gtataacata aatatagtta ctatagaaat      1500
     ttattaagaa actaacgctt aaatatcgct atatgcagta tggaaaatag ggaaatatcg      1560
     aagtgtattg tttgaaggtc attttggata ctttaaactg ctatcaaaaa taaaaatctt      1620
     gttgtattga taagatagtc tattctagta tatagaacaa tcaacagaac tttgaaatta      1680
     cgacttttgt ttcgaccatt tttggcacgc ttttatagaa agcgtcccat agtgcg          1736
//
ID   DNA-TA-10_CQ repbase;    DNA;    INV; 923 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-923
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 60-60 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. TA TSDs. 26-bp TIRs.
XX
SQ   Sequence 923 BP; 305 A; 158 C; 163 G; 297 T; 0 other;
     gggtagagta gtcatcaatg agacacgggg aacaatgata aaatggctct cacaagtcgt        60
     agtttcaacc aatcaggctc atatttgggg gaaaggtgtg tctactggat acacgtctgc       120
     catattagtg gctttggtta tggacgctcc cttgaaaagt tattcataaa tgtttgattc       180
     tggggtgtaa aagtaaatta tggacaaaaa atactttttc gctcgtaggc tgccatttac       240
     accaaaacta atatttcttc aaatttcttt cgacgttcca tagggattga gttgggctac       300
     aatgtccttt cattaggttt gaccaaaatt tagaatatac ccagaatcca gggctgtctc       360
     attgttcccc actcatttca gcccatgggt aacaatgaga cactttgatt tttcttcatt       420
     aaacatttca aaatccatgt aaatctttca aaacatgaat tgaaagtgat ttttggcata       480
     tttatagagt tttaacttca tttaaccaaa catacaaagt tatttggtat aaatatatgg       540
     attttacaaa atttaaatac tttttagtat aacttttgtt aattaaagtt tcatgttggc       600
     aaaattgctc taaaatgttc aaggcaagtc acctgcaatg gaacaataca aaaacatgat       660
     gttttactag aaaagtattg attttcgtag agtgtctcat tgttccccag ctgtctcatt       720
     gttcctgcca agtgcgtcta caatgagaca gttgaataac tctggctgta gatgtcggat       780
     cgatctcata ttttggtcaa tgttagaaca cactaaaaga aagaaaatgc aacaaaaagc       840
     tcattaaaac atgctgatga aaaaattaga aaaatcgttg aaagttgaaa accaaaagtg       900
     tctcattgat gactacccta ccc                                               923
//
ID   DNA-TA-11_CQ repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-11_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-951
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 61-61 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. TA TSDs. 17-bp TIRs.
XX
SQ   Sequence 951 BP; 329 A; 146 C; 154 G; 322 T; 0 other;
     ggggaaggtg gggcaagacg accatatggg gcaagaggaa caatcgctcc tacggccgta        60
     atttgtacaa ttttgattat ttccagtatg aggaattgtt gctagcaatg caattagctg       120
     attctactac cacataaccg ccaaaatgac gtaaacgcca cggggcataa gatttaatga       180
     agtttttttc gaaacctttg ttttcttata atatttggaa agtacaaaat aaggcttagg       240
     gttcgtttta aggctcattt tatcaaaatg ctatttttcc tagatcagta gtgtccctac       300
     aaatgacatg cacctattac aaagtatgat ttaacttttg gttatttttg ttgagagctt       360
     ttaaaaaatc ttgttcaggt ggggcaagtg taccatatgg atttttagta tggaaaaaat       420
     tacgaattgc tgcaacaaca tattttattg ggaaataaat acatgaaagt acttaaaaac       480
     tgataaacaa tcgttaaaaa aaattgtaca tacaaagtat agtgatatta tgaaaattta       540
     ctatttatca tcgaagtagt attttttttc gtaaaaacga taaaattttt agtaaaatat       600
     tattatttaa tctaaaaatg gaagaaacca ttcaaataca ttctaatctg atgtatctaa       660
     gtgataacag ttcaattgtt agcaaattac catatttttt catgcattgt tcctcttgcc       720
     ccaacgggtt gctcgtcttg ccccactagt tgagtagaac gtacggaaaa tcaaaaattt       780
     taaaatcaat ttttcacatt aaaaaacagg attttttaaa aacttgttta aacaaagtct       840
     tagtcaagac ctagaataag atgattataa taaaatccga cagatttttt aactttttaa       900
     tgggttataa cgagcatttc cttagcttgt tacacttgcc ccactttccc c                951
//
ID   DNA-TA-12_CQ repbase;    DNA;    INV; 1687 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-12_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1687
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 62-62 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >89%
CC   identity. TA TSDs. The sequence 727-292 is ~87% identical to
CC   Zator-N1_CQ, but Zator-N1_CQ is truncated.
XX
SQ   Sequence 1687 BP; 626 A; 196 C; 263 G; 601 T; 1 other;
     gggttagtga aatttcacga tttcgcggac agcgtgaaat ccgcgaaatt tggctttttc        60
     cgcgaaatcc cgtgaaattt tatgtttgtg tgaaaatgta acgatttttc ataaaataac       120
     ttatcaaact taaaaaggaa taaaaataat gttatgaact actgtagaat taagcgagtg       180
     aataccctgg ttttattact aatatagggt taatgatttt tgacggtttc gtagacggcg       240
     tgaaattcgt gaaatttatc aattttctcg aatcattgaa tgcaaatatg ggcaaaaaaa       300
     aaataaaaaa tataaatatt gaaataacaa gccatagttt caacatttgc atggaaaaag       360
     tgttttaaaa tgcattttac actagttcag tagttttgca atcattagtt ttcaaaaaat       420
     gtaagatttg acgaaaacaa aaattttagc aaaaaaaaaa acattttgcg ataacaaaca       480
     tcgaaaattt tcaaaaattc gaaagatttt taaatcaacc caaacattct taaaatgatc       540
     ccaaacattc taaaaatgga atgaaaaacg caggggaatg aattttaaat ttatttcagc       600
     tgatccattg aaatttttaa gtttttcgaa aaaatatttt tttgtcccct gatttttcgg       660
     gccaacttcg aagggagggg gagggggggg ggagacaaaa acttttaata aaatttgtac       720
     cagcctaaca acttaataaa tatttcatcc aaaaagaaaa gaaattttat tagttttcaa       780
     ttaaaaagct tgattatata tgtgtgtcaa gttgatatga accatttgaa gaaatgttga       840
     gatttttgag ttttttagaa actaacaaaa tttagtaata ttttcattcg ctgtattaaa       900
     aattttagtg ctattttatt tgaaaggtat agttttgaaa gaaattaaaa gaatcaagct       960
     ttgttttatt caaaataaaa ttaagagtat ttttttatct ttggaatcat attttaaaaa      1020
     cataacaatt tttttgggcc tgttaaattt taacgatatt tgtttatttg ggtggatgat      1080
     tcccktgaaa gttaaaaaat actccttttt tgttttctct tctcatttag aataaaaatt      1140
     tcgattttgt taaaaattat attatttttg caaaatgttt ataaatttag tttttgaaaa      1200
     atgagctaaa acccttaaaa aatatgttta atgggctaaa tgacgcagaa aattcaattt      1260
     attttactca ttttgactgg acaaatctag ctttgatatg aaattcaata aaatgtaaaa      1320
     tgatataaca gaagcaaatt agcgaaaaca tttgagcttt gttagtcgaa tattaaaaga      1380
     gcagttcagt aaatgagaat acgcgtgccc tacattttgt ttcaaaatat atatagagcc      1440
     catccaataa ccaggaggat ttttttttaa ttggaagaat ttttttgtcg cattcaaatt      1500
     tagtaaattt ttttttacat aataatacat aatgaagcat aaaaagtagt ttctgtgatt      1560
     taaacatagg attttcagag ttattttaac atttttcaag ttccgcgaaa tttgcgtgaa      1620
     atttggtgtt ttgaaattga ggtccccgtg aaatttgcaa ttttcgagcg tgaaaaatca      1680
     ctaagcc                                                                1687
//
ID   DNA-TA-13_CQ repbase;    DNA;    INV; 3027 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-13_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3027
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 63-63 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity. TA TSDs. 29-bp TIRs.
XX
SQ   Sequence 3027 BP; 1049 A; 450 C; 461 G; 1067 T; 0 other;
     gggtatatga ccctattttg gacctagtac ctattttgga cctattttta ttaatcgagg        60
     tagttcaggc ttttaaagta cgaattcact gaatccaacc aacagaaagt gtaggcagga       120
     tcgttttgta tcttacctct tccaaaaatg ttaacatttt tgattatttc cgctttttca       180
     gccacttttt ccaacgccat tcgaacttcc tttcattttc ctagcacatc gattaggtcc       240
     aaaaattccg gcctcgttgc ttatcagatt tggctcgcga caccttgatg attttttctg       300
     ttttgcactg acaccaagca atttcgtccg gtttccgagc aatgtaactg ttgtttattt       360
     aattctttct tgttttccgt cactaaacca ttgaaataac tattctatta tcgaaaaaaa       420
     ctcatttcaa aatatttttt caaatcagcc gcgttggatc agtttttgga gctactttgc       480
     cgtcggttca aggctatcac caacacatgc ataacaaggt gttgccagtt ttgtttatca       540
     atttatttcg atatttcatt gaaattgatt gaaatttttt aatttaatat tttgaattga       600
     atttctttac tgtaattatt tgaatgaaat ctaagcttta aaaagcaaat gattaacaga       660
     aacaatgaaa atatgttttt taaacgataa aaatgcaaat tgatgctaga gatttagatg       720
     attgttagga ccgattgcaa agtatcccaa aatttaaact gatgttgatt tatttttgtc       780
     ttaacatcat tatcaccaat ttagccgcat atatttttaa tttttgcttc aaaaaatgca       840
     aactggctac cctgttggaa ttgaagggga aacgattgaa aaacctaaag ggtctagttc       900
     attaaatcgt cagctgtcac cgtgacagga gctgtcaaca tcgcttacga gtggtttttg       960
     aaaaagtcgt atgaattaaa tttaaaaaaa tcttgagtta gttttaaaaa gatcctaagc      1020
     gctagttgta aacaaatcaa tttttcgatt agttctcgat caatttacga attataaata      1080
     aaaaatgctt tgaattatca tctgcacgtc ttttaaatgc tctttactgg aaaacaaaca      1140
     aaatttggtt tggttcagaa aaaaaatcaa atatgtgtcg gagatcgtga tggcttttaa      1200
     gacgtattgc aaactaatca gagaaatata catatggaaa atatattttt tgtaagtttt      1260
     atctgatttt tgcatattta tctatatata atttttaaaa atacaggtat aacgattttt      1320
     ttcacaattg gcagcgttgg tttataataa attacacttt taaattttac cgtgtcaatc      1380
     atgttagaaa cacaattaaa ccagctagaa aaataaaaat cttcgaaaaa aaataagcat      1440
     aagaggttaa tgcgatgtta acattatgaa ttttatgatt tgagacatat agccggggtg      1500
     actttgatag gtttgatatt tttccgcaaa atgaagagta aaaattgaat acgtacggaa      1560
     tggtatggaa tcatactgac cgtggtagag aagtgctcaa agtacctcat gaagaacttt      1620
     tcatgaaatt ttgaaaagtt taaaaagtta gttaactata actaagaaaa tgttgataaa      1680
     tagcattatt ttcatcttct caacgtgtca tgattttttc aatgaacatg attttgaatc      1740
     gtaaaacgga atgcattttc ggattcttcg gacaatcttc tactaggaaa aggtaaaata      1800
     agtaatataa atattattaa atattatttg tttttgaaac ataatttaaa aaaatctcat      1860
     aatttaaagg catttccagt aaaacaaatt tcatataaaa tgtgaaaact tttgattcat      1920
     tctttaaatt cagttataca tgtaatataa atccataatt taataaacaa aactagtttc      1980
     aacgaatttc aggcaaagtt ctgaattttt aacaatatta cctaaaattt atatgtatta      2040
     tgttaaaaag cttataaaca tagttaacta agtattgaca taaatgattt tcttaaaaat      2100
     tatatcagca acctaagtga tggtaagttc gaagtaaaaa taatgtttga aaacctcaaa      2160
     tctgctttta acaagacaaa ctatgactat caaaggcacc ctggtattca aacaaagatt      2220
     tttttcaaat attacattgt ttttaaagtg caacatgtag ttaaactttt tgtcaagcaa      2280
     ctgtaaagtt taacatgaca gatgagaaag tttcacacca agttacaagc tataatctcc      2340
     ctttaaaatt tcttgattgt ttaataatat ttgaacataa gctctgcgta aaatttagaa      2400
     ccttttttca ttgtaacttg ttatgtatct gtgtcattca tttaatttta agataaggtg      2460
     tttttattgc gagtaataac gggttgtctt ttatgttcta atgcttgaac aattaggtcg      2520
     taagaatatg caaattgtaa ataggacaga gacctgctaa agatgcgtga gtttccattc      2580
     aatatgatta aaacacgttt tcaaattcaa atccattgtt tcatcataat tgtttaattt      2640
     ctgaaataaa tattttccaa attataatcg tggataggcc ctttggttta tcaaaccgag      2700
     tttttgtaag tgtgcgtgtt gccgccgcac gccgcaattc gagttgtcca aatttcaacc      2760
     aatcagagtg tgggtccaaa ataggttcag cgatgtctcc aaaatacatt caataagtcc      2820
     aaaaagcatc caaaaaatgt tttacttgaa atgcttatta caatggaatg gttaaattat      2880
     tttaaatttt caatagtaca ctttgttaag cataaattaa ggcacaaaac aatcctgaaa      2940
     cgagccaaat tagttagacc gttcctgaga actatgcgaa atatgttgac gctttgcata      3000
     gtaggtccaa aatagggcca tataccc                                          3027
//
ID   DNA-TA-14_CQ repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-14_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-151
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 64-64 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. TA TSDs. ~70-bp TIRs.
XX
SQ   Sequence 151 BP; 57 A; 24 C; 19 G; 51 T; 0 other;
     cactgaaata aaaaaaagta ccaaattcct aaattctagg aattttgcct cctttcctta        60
     ttaagtaatc caaaaaaccc gattactaaa taaggaaaag tggcaaaatt cctagaattt       120
     aggaatttgg tacttttttt ttatttcagt g                                      151
//
ID   DNA-TA-1_AAe repbase;    DNA;    INV; 3585 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   02-MAY-2019 (Rel. 24.05, Last updated, Version 3)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-1_AAe.
XX
NM   DNA-TA-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3585
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1270-1270 (2011).
XX
RN   [3]
RP   1-3585
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TSDs are usually TA. TIRs are
CC   ~1200
CC   bp long.
XX
SQ   Sequence 3585 BP; 1093 A; 737 C; 747 G; 1006 T; 2 other;
     cactacccgt cataaatacg gactcactca aaaaagtatt gcaacacaca gctgaataat        60
     gaatcaccct gaaaagttta gcatcacctc aaaacaggtt aattcacatt gctatatctc       120
     gagatcctta cgacttacaa agaagcgatc ttcagcaaag ttgttcaggg gatcaaggac       180
     atccggaaag cgaacagttt agttcgcgat tttgccgcta ggtggcgcta gtgagcattt       240
     aaaattgagc attttgaact agttctagct tgtgatccat aagagataga aagttcgggt       300
     cttcggcaaa gttgctcagg ggttcaagga catccggaaa gcgaacagtt tagttcgcga       360
     ttttgccgct aggtggcgct agtgagcatg taaaattgag catttcgaac tagttctagc       420
     ttgtgatcca taagagatag aaagttcggg tcttcggcaa agttgctcag gggttcaagg       480
     acatccggaa agggawcagt ttagttcgcg attttgccgc taggtggcgc tagtgagcat       540
     gtaaaattga gcattttgaa ctagttctag cttgtgatcc ataagagata gaaagttcgg       600
     gtcttcggca aagttgctca ggggttcaag gacatccgga aagcgaacag tttagttcgc       660
     gattttgccg ctaggtggcg ctagtgagca tgtaaaattg agcatttcaa actagttcta       720
     gcttgtgatc cataagagat agaaagttcg ggtcttcggc aaagttgctc aggggttcaa       780
     ggacatccgg aaagcgaaca gtttagttcg cgattttgcc gctaggtggc gctagtgaga       840
     atttcacatt gctatatctc gagatcctta cgacttacaa agaagcgatc ttcagcaaag       900
     ttgttcaggg gatcaaggac atccggaaag cgaacagttt agttcgcgat tttgccgcta       960
     ggtggcgcta gtgagcatga ctcaaaactg agcatttcga actagttcta gcttgtgatc      1020
     cataagagat agaaagttcg ggtcttcggc aaagttgctc aggggatcaa ggacatccgg      1080
     aaagcgaaca gtttagttcg cgattttgcc gctaggtggc gctagtgagc atgtaaaatt      1140
     gagcatttcg aactagttct agcttgtgat ccataagaga tagaaagttc gggtcttcgg      1200
     caaagttgct caggggttca aggacatccg gaaagcgaac agtttagttc gcgattttgc      1260
     cgctaggtgg cgctagtgag catgcaaaat tgagcatttc gaactagttc tagcttgtga      1320
     tccataagag atagaaagtt cgggtcttcg gcaaagttgc tcaggggttc aaggacatcc      1380
     ggaaagcaaa cagtttagtt ckcgattttg ccgctaggtg gcgcaagtga gcatgtaaaa      1440
     ttgagcattt caaactaggc actttcagac ctgcagcact tgaatataaa tgcgaatcaa      1500
     acctgaatca cttgaatatg gtgcgaatcc gacatgaatc acttggatat gaagcgaatc      1560
     aaacataaat cactggaaat aaatcctaaa tctcttgaat atgaaatcaa tcagacctga      1620
     atcacttgta cataaagtga atcaaacttg aaacatttga aaatgaagtg aatcacttga      1680
     aatcatttga acatcaatga atcaaaccta aatcagtcga atatgagtga atcagataag      1740
     aatcactagg atatggaaca aactgaatca cttgaaaatg aaatgaatca attctgaata      1800
     acttaataat aaagtgaatc tgacgtgaaa cacttgcggg tatggagaga actaaacttg      1860
     aatctattga atataaaatg aatcaatcct gagtcacttg aacatggagt gaatttgaca      1920
     tgatttttgt ttactccata ttcaagtcaa acctgaattt cttgaatata gagtgaatca      1980
     aacccgaaag acatgaatat aaagagaata agacatcaat cacttggata tgaagtcaat      2040
     caaacttgaa ccatgaagag attctgactt gaataatttg aatgtgatga atatgagtcc      2100
     tgactgagtc actcgcacat ggagtaagtc ataccagaat cactagcata tgaatcagat      2160
     atgatacact tgaatataca tttgatcaga cctgaatcac tttaatttaa tatgattcca      2220
     tccctaatca cttcaacttc caaatgtcaa agaatatctg aacagcattc tggaaattct      2280
     atcttatcaa attcataatg ttaaggtaca gtcatccctc cagagtaaac tgtttcctgg      2340
     atgcccttga ctttccgaac aactttgccg aagattcaaa cttcctatct catctggctc      2400
     gaaaaataga atttgtttca tatatttaat taaatatgcg tactagtgca acctagtggc      2460
     aaaattagga accaaaaaat ttgatatttg gatgtccttt actttatttc tgttctttac      2520
     ttaccgaaga ctcgaacttt ctatctcttg tggatcgcaa gctagaacta gatcaaaatg      2580
     ctcagtttta catgctcact agcgccacct agcggcaaaa tctcgaacca aactatctgt      2640
     cttccggatg tccttgactt tctgaacaac tttgccgaag actcgaactt tctatctcat      2700
     gtggatcaca agctagaact agttcgaaat gctcaatttt acatgcccac tagcgccacc      2760
     tagcggcgaa atctacaacc taactgtttg tcttccggat gtacttggcc ttcttaacaa      2820
     cttcgccgaa gtctcgaact ttctatctct tatggatcac agtctagaaa tggttcaaaa      2880
     tgctcaattt tacatgctca ctagcgccac ctagcggcaa aatcgcgaac taaactgttc      2940
     gctttccgga tgtccttgaa cccctgagca actttgccga agacccgaac tttctatctc      3000
     ttatggatca caagctagaa ctagttcgaa atgctcagtt ttacatgctc actagcgcca      3060
     cctagcggca aaatcgcgaa ctaaactgat cgctttccgg atgtccttga ctccctgagc      3120
     aactttgccg aagacccgaa ctttctatct cttatggatc acaagctaga actagttcga      3180
     aatgctcaat tttacatgct cactagcgcc acctaacggc aaaatcgcga actaaactga      3240
     tcgctttccg gatgtccttg aacccctgag caactttgcc gaagacccga actttctatc      3300
     tcttatggat cacaagctag aactagttcg aaatgctcaa ttttacatgc tcactagcgc      3360
     cacctagcgg caaaatcgcg aactaaactg ttcgctttcc ggatgtcctt gatcccctga      3420
     acaactttgc tgaagatcgc ttctttgcaa gtcgtaagga tctcgagata tagcaatgtg      3480
     aattaacctg ttttgaggtg atgctaaact tttcgggggt gattcattat tcagctgagt      3540
     gttgcaatac ttatttcagt gagtccgtat ttatgacggg tagtg                      3585
//
ID   DNA-TA-1_CQ repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-238
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 51-51 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99%
CC   identity. TSDs are TA.
XX
SQ   Sequence 238 BP; 70 A; 55 C; 52 G; 61 T; 0 other;
     cactcaaacc ccgatggttt gacaccaact gttgtcaaac gaacggggtc actttttagt        60
     ttgacacccc ttttacacgg agttcacaca cactaccaaa cgtttgtttt gatagtgtgc       120
     gtgagcgccg tgtaaaaagt gacagttcgt cactttttag tttgactttg accaaccaac       180
     ggggtacaaa ctaaaaaagt gtcaaacgaa aaagtgacca accaccgggg gttgagtg         238
//
ID   DNA-TA-1_DF repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 761-761 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. ~24-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 184 BP; 44 A; 45 C; 41 G; 54 T; 0 other;
     cagtagaatc ctgttataac gactccgctt atagtgtccg tccgggtatt gcgacgaaaa        60
     ctcgatggct tgattggtcc ccagacagac ttatacactt atatcctttt gcttagtgcg       120
     tcttccgggt ataacgacga aaactcgtcg gtcccttgaa agtcgctata agcggattct       180
     actg                                                                    184
//
ID   DNA-TA-1_DTa repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 17.08, Created)
DT   25-MAY-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-793
RA   Kojima N.F. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1433-1433 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus
CC   TSD TA
CC   TIR 24bp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 793 BP; 245 A; 144 C; 146 G; 258 T; 0 other;
     ggggagagtg ggggaatttc gtcagcattt tttcaaagct attttttgtc catcttgaga        60
     cacgttatca tatttctatt tttattgttg aatgcggtta gcaccaagct ttaaaatgtg       120
     acattcccct atttttttaa ttaccttggt gatttataaa aaataaaaag taaaaccaat       180
     atactggggc aatctcgcca catagggggg taaaatcgcc acaccactgg ggcaatttcg       240
     tcacctgaaa aatgtaggga gtttaacgcc tgtaaatatg ctacactgat caagcgtacc       300
     atttttgttg acgtcctata tttgttgctg ctgccggtag tctgttcgtt agccagctcg       360
     tcaaataaaa aaatatgtat ctaaaatagg tgcgaattta ccctaagcat agggtggcga       420
     aatttcccca gacagtactt ttttagaaat aattattttt cttccgaaat taggcgcgaa       480
     gttaaaaatc actaacgcag aaatgcacat tatagcactg tgtattatat aaaaaatcgt       540
     gtatcttatt ccttttgaat tgtggcatac agaaaaaatt tcgtcgagaa ctaaatgtag       600
     cttttgaact gttaaaacac atttaatatt atagcttaat tatcttggcc ttctgtgcaa       660
     aacaaatgca ttggttgtgt ctggccgtct tgaaggacta aaacaaaaaa attatatatt       720
     tttacgactt atggattccg agatattgca ggtgacgaaa ttgcccctgt gacgaaattc       780
     ccccactctc ccc                                                          793
//
ID   DNA-TA-1_PPo repbase;    DNA;    INV; 730 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-730
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2734-2734 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~80bp TIRs.
XX
SQ   Sequence 730 BP; 276 A; 119 C; 105 G; 230 T; 0 other;
     gtgatgggac tcgagtgatt ttttttcact cgagtcactc ggtactcgta actttctcac        60
     tcgaatgcca ctcgagtgaa gataagactc gagtgatgtt tatagacgcg agtcactcgg       120
     aatataaaaa tcgaggaacc aaaattttaa aaccaataaa acaatgttaa tttaacataa       180
     agaaattatt ttcgcattaa cgtaaaagtt actcaaaaaa tctgtacaaa atgtgtaaaa       240
     atagtgtttt cctttaaact aaacctgtct acataatcaa gaaacctctt atatcatcta       300
     ttagttgaaa ttttatagtg tactataaat aagttctaat ccattttaat aaattcttac       360
     aagtaatttt catgagatcc aaatattttg actttgttga gtttgattat gttcttacac       420
     aattttgata ataacatgct ttaaaattta aagttaagtt aagtaaagtt aattaactta       480
     aacgaagctt aaataaactc tacaaaagaa cagaaatagt gtgtttttaa aaagataaca       540
     aatttaactg aaaatgctgt aaaaatttct tactccgctt agtataaacc aacaaaatgg       600
     ttacgagtca ctcgtaattc gagtcaactc gagtcactcg caactcgggt tgtcaaaaat       660
     ttcactcgag tccgagtaag aaaaaaatga ctcgagtcac tcgagtaaaa agcaactcga       720
     gtcccatcac                                                              730
//
ID   DNA-TA-2_AAe repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-511
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1271-1271 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. The sequence shows a
CC   similarity to PONY_AA and MITE_AA.
XX
SQ   Sequence 511 BP; 169 A; 99 C; 82 G; 161 T; 0 other;
     taccgttttg attcatatta cggacactta aggcttcagt gaacttcaac taatcgaaac        60
     atatataaat tgaatcgttc cctatacaac tttagcgtaa tcaggccttg caaacactta       120
     aatttcgaat gctgggtgaa gatttggatt ccacagcttt aattcacttt aatcaacaaa       180
     aatgttcggc ctcttcatga tttttattcc ggacacaacc acacttttgc ttcatattcc       240
     ggacacattg attcgaattc cggacagctc atgaaaaaca caattagaat agtcgaatca       300
     ttaactaaat gcactaatcc gttagaaaga cgtcaaaact agttgaacat tgtaaatttt       360
     catggattgc tatgtaaaat gtttataaaa atcatctttc aaattgggaa ctttttgacg       420
     gcccattttg aaacatttcg agtgaaatct ttcccataca aagtagagtg tccggaattt       480
     gaagctgtcc gggattcgaa tcaaaacggt a                                      511
//
ID   DNA-TA-2_CQ repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-390
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 52-52 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. TSDs are TA.
XX
SQ   Sequence 390 BP; 98 A; 88 C; 90 G; 114 T; 0 other;
     cacccaaagt taaagaacga ggggatagtc ctcacgaaaa gaaacgtgag gaaagtgcta        60
     ttttgcgaga gtatagtcct ctcgcgtgtt cattcgttca ttggaacagt tcatcctatt       120
     gagtggctta tatggacaaa tgaccgccac ttagtcaccg aaccatggtg gcccatacgg       180
     caaaggcacg gttcaatatg ccgaaggtct tgggttcgag tctcggtacc ggtacttttt       240
     ttttgataga tgaacttttt ttgaagatga acccatgagt aaagtactct cggtaatttc       300
     gggatttatc ctctcagtcc gcacacagta ccattttact accgaatcgt gctctttatc       360
     ctctcgtatg ccgatgccca gttctgggtg                                        390
//
ID   DNA-TA-3_AAe repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAY-2019 (Rel. 24.05, Last updated, Version 4)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-3_AAe.
XX
NM   DNA-TA-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-454
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1272-1272 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. The sequence shows a
CC   similarity to hATm-2_AA 1440-1867.
XX
SQ   Sequence 454 BP; 162 A; 88 C; 69 G; 135 T; 0 other;
     caggtcggac tcgattatcc ggagtatcga tttttttttc actccggata atcgaatcct        60
     ccggataatc gaatcactaa gaaaaaaatt gaaatcttcg ataaaagaac ttaaatatta       120
     tcttttttcg ttgttttatt tatatgatgc ggtggcgtag ccagaaatta tttctaggaa       180
     cagtaggggt ctttacaaga aaaaaatttt tttgaccagc atacacaaaa aaacactttt       240
     tcaaaccccc cttttcttaa atacgttcaa aactgcaaaa ccattcatat tgtatattgc       300
     aataccaaat tatctcagat ttatgcataa aaattgaaaa acaagaacat caaaaaacaa       360
     attccggata atcgagtcta aaattccgga taatcgaatc ccggataatc gagtccccgg       420
     ataatcgagt ctccggataa tcgagtccga cctg                                   454
//
ID   DNA-TA-3_CQ repbase;    DNA;    INV; 418 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-418
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 53-53 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. TSDs are TA.
XX
SQ   Sequence 418 BP; 158 A; 75 C; 95 G; 90 T; 0 other;
     cagtcgactc tctggttgtc aatatccaag ggaccgtcga ggaagagaat catcagttta        60
     cagaacgatg caaaatgaag actcgattga aaatattttt ttcttgatac ccagctatgg       120
     gagagaatca tggcaacgtc catcaaacaa aaacaaacta atgtcaaaca cccttcaaag       180
     cttcgtttcg ccaagaaaaa tgtctatgca agccatgaga aagtgaaatt attgacaacc       240
     ggaagagatt tttaaagcaa acagaatcca agggaccgtc gaggaagaga tccttcaagc       300
     aagggaaaat atcgaggaat gaagacaatc gaagtatgca gattgaaggg actgaagaat       360
     tcatcgatag atggagaatt attgatatcg agaagatcga cagccagaga gtcgactg         418
//
ID   DNA-TA-4_AAe repbase;    DNA;    INV; 629 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-629
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1273-1273 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. TIRs are 24 bp long.
XX
SQ   Sequence 629 BP; 217 A; 123 C; 100 G; 189 T; 0 other;
     ggggaagggg tggtaaaatg aacaccttaa ggatatcatc ttgtttctga tagaaaaacg        60
     aggaatatgt atagttttat cgcacaagat caaaaacagg gatgttagct aaagcaggaa       120
     cacgaattca gaccaaaata gctaaatttt cacatatttt tatcgctagc aaaaaacaat       180
     tgaaatgttc attttacctg cactatgtgg gtaaaatgaa cagctgttgg tggtaaaatg       240
     aacatcatgc aaaaaacgtg agcaaaacta atatttttaa caattttcgc tgcattcccg       300
     aaaatatatc tataaatgat tgtaacccat tcaaaaagaa atgtaaaagt ttcagatttg       360
     acatcacatc acaacgatat tcccatcact gaaaaacctc aagacctccg agccaaaagt       420
     tacgtcagct ccaattttca aacgtggttt tctaaaatct tagttttcgt tgatattttc       480
     acttcaattg acctccgtat caatccgaac actcggatat atgctctaaa tcgtccgtgc       540
     gtgataaaaa ttcattgaaa tttgtttttt ctcggtaaaa ggcacggtgt tcattttacc       600
     acccctgttc attttaccac cacttcccc                                         629
//
ID   DNA-TA-4_CQ repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-241
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 54-54 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >90%
CC   identity. TSDs are TA.
XX
SQ   Sequence 241 BP; 80 A; 42 C; 38 G; 81 T; 0 other;
     cacacttaga tttttttacc gaattcggta aagtttaccg aattttcaac tgctgaacag        60
     ttcggtaaac tgaaaattac cgaattcggt aaaaacttac cgaaattcgg taatgaagtt       120
     cattattgtt catcgtacaa ccgaaattcg gtaaaatttt gttcattttg acagatggtt       180
     taccgatcta aactttaccg atttttcaac taccgaattc ggtaaaaaaa atctaagtgt       240
     g                                                                       241
//
ID   DNA-TA-5_AAe repbase;    DNA;    INV; 2424 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2424
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1274-1274 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. TIRs are 29 bp long. The
CC   sequence similar to DNA-TA-8_AAe is masked by x.
CC   The region 1334-1586 is an inserted FEILAI_AA (~94% identical to
CC   consensus).
XX
SQ   Sequence 2424 BP; 744 A; 442 C; 412 G; 740 T; 86 other;
     taccgtaaag tgccctaatt cagcgcagtg cctaattccg cgcatttcat acaaaattat        60
     ttatatatgg aaatacacat taatatttca gcaactttta atgctattcg aggctacttt       120
     gattaagaat aagtttgaat cacaaataaa agcaaataag gcattttttc gcggcataaa       180
     aaaataatca gtgaaggccc gtcggagtag acgttatttt tctaattttc ttagcgtccg       240
     cgctaagact gtaggacaac aacaaacgcg atttctttat taaaaatgtt ttatttttta       300
     tgcaatattc catggaacta cttgctacag atatgtttca tggtgcttct atgaaatctt       360
     atcaaatatt agcataatta ttgagtttta ttcaaaaaag tattgcgcgg aattaggcca       420
     cgtctttttt cataatgccc taattccgcg cactgttctt cgcataacaa cagacaagta       480
     aaacatgcta tatccgtctt cacatctgtc tatttctctg aaaagtaact ttatgcatac       540
     atacgtttca tgtacaagcg gaatatcggg aaagcccact taggcagcgt ccataaatga       600
     cgtagcatct tttgaccaat ttttgacacc ccttccccct tcgtagctta ttttcccata       660
     cttaatacat ggttcgtagc aaaatcgtag actccccctc ccccctaaaa tgctacgtca       720
     tttatggacg gtcccttaca gggaaaaata ccacgtggtt tatgcacagc cccaacaaaa       780
     tagtctatac acacttagat ttttttcacg agctcggctg tgcggatctc ggttgaaatt       840
     agccgagatt cggcattctg aattaagtgt gtacatctgt gcgcacaaaa tttacttagc       900
     ataatgaacc acacataaca ttggcaatgt atacttgttt atgattctta tttatattat       960
     acaatccata tagaattatt gtaaaaacaa catatcgttc acatgttcaa caggtcgtaa      1020
     tttgtagaag accccacaaa ttacgacaca ctctcgggaa atgattcacg gaaactttac      1080
     gatctctaca taatttacga agcctccata caaaaagtat gataatacgg gggagaggga      1140
     ttgaaaatgg ccatattttg tgtgacgtaa tttatggatg acccttaggt tcttctgagg      1200
     tttctttttg cttaaaaaaa taagtttcag ttacccgtgg cattagtgga taccattaat      1260
     tgatttgctt aaaacccttt gattccaagc aataatgcga actggtcctt gtattgtatg      1320
     aacagtgcag tttgctacaa agcaaagcca tgctgaaggt gtctgggttc gattcccggt      1380
     cggtccagga tcttttcgta gtggaaattt ccttgacttc cctgggcatg aggtatcatc      1440
     gtgcctgcca cacgatatat acgaatgcaa aaatggcaac tttgacaaag aaagcttcag      1500
     ttaataactg tggaagtgct cataagaaca ctaagatgag aagcaggctc tgtcccagtg      1560
     aggacgttaa tgccaagaag aagaagxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1620
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxgagtattt      1680
     catttctaaa ctttccagtt cagtgaataa aataattaaa ttgttagatt ctatgggata      1740
     atttcacaac ataaaatagg gtgctcatat caccccatcg acagaagaat cgacgaaaaa      1800
     ttcattcgtg ttttttttta agacgacgga aatcgtgcgt atctagtgta ttgatctaaa      1860
     aatttcaatt attacgactt ttcttaagat ggccaaattg ccccactttc ccctagacga      1920
     aattcacacg taccaatgcc acggttttgg ttatctttat ttcatgtgat agacaaaaag      1980
     ttaataaaaa aaactgaacg tagactaaaa agttacggtt catacaaaac tctacgtttt      2040
     ctcatacaaa aagtgttacg gaaggggagg gggttgaaaa ttttcaattt taagtgttac      2100
     gtaactaatg gatgcagccc cttatcaaaa ttaatgttaa tttgattgtt tcatgagtgc      2160
     gcggaattag gcattcttct gcgcggaata tggaaaagcg tttaaaaaat gcgcggaatt      2220
     aggcaatttc aacgagtgaa ctatttcaaa aaaatcacaa ttgtaaatta tgaatacagt      2280
     ctagtttata tttttcccat aatcttgaat agatttgcta gcgatccacc cataaagctt      2340
     ttttgttgat gcaatactaa tttttaatta acaatttgaa tcgttttatt ccttaactgc      2400
     gctgaattac ggcactttac ggta                                             2424
//
ID   DNA-TA-5_CQ repbase;    DNA;    INV; 1419 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1419
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 55-55 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. TSDs are TA.
XX
SQ   Sequence 1419 BP; 493 A; 222 C; 243 G; 461 T; 0 other;
     ggggagtttg gggtaatatg gacagtgggg gtaatttgga caccccttta aaaatcacgt        60
     tttcttcgga tataaagtga aaacggcaat ttaagtgata aggctagtac tagtaatggc       120
     ctaggagtat ggacaaacca aaaaagttgg aataggttaa gtagttttgg tataatgtgt       180
     aaaagtttcc aaaggccggt tggcactgcc ttaaattcta atatttgaag gttaggaaat       240
     aaggttttgc aggggttata tggcaaaaaa gtggacattt tttgtttaag ggggttgctt       300
     ggacgatgcc tgagatatgt acgtataaaa attgtgcatt ttatccattt ttatcatcaa       360
     aaatcgcaat ttatgataga atatgctatg ggggtaattt ggacatggct tgtggggtaa       420
     tttggacata cctgaaagtc tacctgtcag gcaacaaaaa agtaactttc atggttggat       480
     gagtttttaa agggatttag ataaatttag agggatttaa tatgtcaaaa caatcaaaaa       540
     tgaatgtgag caatgagaac tttcacaaaa cccctatttt ttaatttaga taaatttatt       600
     ccaatattcg aattgatgaa aatctgatta ctgtacattt ggcgttcaac aagactctaa       660
     tgttgattgc ttttaattaa tttctttgac atttctaatt tctatgctgg tttacaataa       720
     tatttaaatt tgaagggcta cagaatgtaa aatttaaaaa aaatgatatt ttcaggctaa       780
     taaattctat ataaagattg atttatataa acataaacga taccttaatc actaaaaaca       840
     agtatagtgt gcctgatcca gaatcaatgt ttaaatcatt tcagtattaa tgattaaatt       900
     atgtatacta cactgaacta tttgttatct tcctattgaa ttatagttct atcacaaaat       960
     cattatttaa acctttgatg aaatattgtg agcaacactt caaaatataa agcaattaca      1020
     aaaccaggtt gaaggataaa aaacatgctc aaaaaatcaa atgttaaact tattcttcaa      1080
     catgtgtcca aattacccca caaaaggtgt tcatattacc ccacaaggta tgtccatatt      1140
     accccacaag gcatgtccaa attaccccac aaggcatgtc caaattaccc cataggggtg      1200
     ttcatattac ccccacacaa aaatgtgggg gtaatttgga caccttttaa cttttgcgat      1260
     aaaaatgggt ttttcatcaa aatttatcga aatgaatgac atttttccat caaatatggt      1320
     ctctattatc ctctggtgtc atccacattc ctttaaaata tccatacagc ccgtaacaga      1380
     gcaatttcct tagggtgtcc aaattacccc acactcccc                             1419
//
ID   DNA-TA-6_AAe repbase;    DNA;    INV; 2220 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2220
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1275-1275 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. TA TSDs. TIRs are 24 bp long.
XX
SQ   Sequence 2220 BP; 728 A; 391 C; 391 G; 709 T; 1 other;
     caggtatgtt ccgtttttat caacacgatc ggcaattttc agttgacaaa aacggaaccg        60
     tgacaaaaac ggaataattt tcttagacaa aatattttac aaatttgaaa agaaaattgc       120
     agttttgtca ggataataca cattttcatc atataaatgc acagtattga tgtttaggag       180
     ctgtgaggag catttagatt gttcattctt ataggttcgt aatgaaagtt gattgcagac       240
     tcctatcaat caatatgatt ttgtaataaa tcattaatag ttttagtttt cttggttaga       300
     atttcaataa atgtaatata gaatattaaa acgataatca cataaatgtc ctttgcatca       360
     taaggtgcgt catatttgta aaaataacta caaggaagtg ggtcaagctg atcatttttt       420
     tcaagaaaga ttaaacaaga aacaattctt tttctactgt tcatcctcat ccttctgctt       480
     cttcttcttt atggcattac atcccaactg agaaagagcc ttcttctcag cttagtgttc       540
     ttataaacac ttccgcagtt atcaactgag agttttttgc caaggtacat tttttgcatt       600
     tttggccaca tccgattggc gattaaatgt ggagttatgt tgcgaaagtt ttgcaaactg       660
     aaatgaatat ttacggtttc ctgtgctttg aattgccaaa ttctatcagt aaaatgattg       720
     tggtgatctt tcttctaaag ttattactac caacttcgac agggatgcac taatcgccaa       780
     tctagaacag cgccaccatc gccttttagc tttacgttag atcacgaata gactggcaat       840
     aaactaacct taagttctag ttttttgttg agtaaaaata atattaaata ctagtggtcc       900
     cgtcaagctt cgttttgcca tcaagtaggc tgctgaaaaa tggcatgcaa tctcccatac       960
     aaaacgacag attagtttcc aggtgttttt ccagttattc cagataattt tccaaatcgt      1020
     ttccttcact caaacacgtc ggaacacttg accaatgcaa cagtgaaata atcatgtaag      1080
     tctatcagcc cgttcttaag gcatttcgtg acgtacaaac accattccat ttttatttat      1140
     atagaagtta tcaaaaacac aaaagtgtac aaactctaga acaagcatca ccaaatagaa      1200
     ctttttggta agaaactctt ttgtaaagtt ttatgaataa gcgtatggct gttggtataa      1260
     gactcctaat taacctttta gtctccatgt ggggaagggg ttcatgtctg ctcaaagatc      1320
     aagatcccag caaatttggg atggcaacaa aatcttctac agattgctta gttttgctgg      1380
     acctcttccc ctaccccttg gaacaggatc taatcaatgg ctgtttgcta taatttgtgc      1440
     aatgctatcg agtttgagag atagaagata atgtccaaaa tatgacgggg tcgacagtct      1500
     tatcaaaaat aaaataaact cgatcatgtc tcttgccgtt gcccaaacat tcttgagttc      1560
     attcccaagt gcatccctta tcaaaaagaa ctgaacatat atgggatcgt ccattaatca      1620
     cgtaagcggt tatgggggga ggcaggggga tttgagatat cttaagtgcc atacaaatta      1680
     ttttttattt tcatacaaaa aatcatacca tagggggagg gggtaaatat gtctatcaaa      1740
     tttacataga aaattctttt atgccatgtt atataagaaa aaggagaggt ctctgcaact      1800
     ctcttaagta cgtattcaac taatcacaaa ttccagttgt tgctaggacg tggccagagc      1860
     aactctcgat tgttgaagga tgggccaatc ttgtccaaca gaccatgcta agtttgaaaa      1920
     ctccaattga ttagttgcat aagaaggagt caaaccttat tgaatcgtat atgacttgac      1980
     acctaccatg tatcgtaggt gctcaacatt aacataatgt cgaaaattca actctgaggc      2040
     tattaaaaag catttmaatt gcttcaaaat aagtatttag tttatattct aaacattttg      2100
     aaaattaaaa aaaacaattt ttgtgtgttg ataaaaacgg aataatttgt tgacgaaatc      2160
     ggaacgtgac aaaatcggag cgtgacaaaa tcggaacgtg ataaaaacgg aacatacctg      2220
//
ID   DNA-TA-6_CQ repbase;    DNA;    INV; 931 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-931
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 56-56 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91%
CC   identity. ~30 bp TIRs. TA TSDs.
XX
SQ   Sequence 931 BP; 354 A; 128 C; 136 G; 313 T; 0 other;
     ccgtaaaacg gggtgacttt gatagccggg gtgactttga taggtttgcg atttttccgc        60
     aaaatgaaga gtacaattaa aatacgtaag gaatggttcg gaaacatact gaccgtggta       120
     gagaagtgtt caaagtacct caagaagaac ttttcataaa attttgaaaa gtttaaaaag       180
     ttagttaact atagttaaga aaatgttgat gaaagtcatt attttaaact tctcaaagtg       240
     tcatgatttt ctcaatgaac atgattttta atcggaaaac ggaatgcatt ttcggattct       300
     ttggacaatt ttccactagg agaaggttaa ataagtttgt aaataataaa taatatgtgt       360
     ttttgaaaca caatttaaaa aaatctccaa atttataggc aatttcagtt gaacaaattt       420
     catgtaaaat gtgaaaactt gtgattcgtg cttcgaattc agtataaaat gcaatataaa       480
     tcgataattt tataaacaaa actagtttta acaaatttca ggcaaaattc cgacttttta       540
     acaattttac ctaaaattta tatgtatttt gttaaaaagc ttataaactt agttaactta       600
     atataaacat tgattttttt tcttacaaac tatatcagct actttagtga tggtacattt       660
     aacgtacaaa taaagtttga acatcttaaa tatgatttta acaagaaaaa ctatgactat       720
     caaagtcacc ccggaattaa aaccaagaat ttttaacgta actatttttc taaacactat       780
     tgaaaaaact ttttttccaa aatagtgcat ggactttgtg tggcctaccc cagtacatgt       840
     tttaaaaata ataatcttga gaaaaacctt acctgttgga aaatattcta aaaacaaatt       900
     gaaatcctat caaagtcacc ccggtttacg g                                      931
//
ID   DNA-TA-7_AAe repbase;    DNA;    INV; 2833 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2833
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1276-1276 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TA TSDs. TIRs are 24 bp long.
XX
SQ   Sequence 2833 BP; 944 A; 405 C; 449 G; 1035 T; 0 other;
     caggtatacc tcgatttagt ggaccctcga ttatatagac cctcgatttt atgtacttcg        60
     attttatgta cattttacct cgattttatg gacatcaaaa tttcatgtta aattttttga       120
     tgtttatcca attctaaaca tgcattatgt aaacttaaac aatgtaaggg atttaggcta       180
     tgcttataga agggttgggt catgttttgt tgtaaaatat tgaaaaaaat attaataaat       240
     atacaacaaa gcttttacaa tatgggaaag tttaaaaatg aggagacttc agttcgactt       300
     actcaacccg ttttttttgg ctttcgagtg ctttcaattt ggattttgtc cctctgtcaa       360
     cttttaacat gttgccattc acgacttgct tcaactaagt ttatagtgat ttgtgcgaat       420
     tttaattatt aataagaagt tacctcttgt tcttaggatt gttccaaaaa tcccacaaat       480
     tcgcatttct cataaggggg ttttatactt ttcagagatt gattcaagtg cccttccaga       540
     gttttatcga agtaggaaga gttgttaaat caagcaagaa tttatcaaca aattactcaa       600
     acgattattc atctttcttc agtattattt agacgaacct gctgaaatta ttgcagtagt       660
     ttcttttttc tatatattcg ttttgaagca cgacaatgag gatagatttt tttcaatgat       720
     tcgtgcacgt tcatcactcc aatcggtact acgttgagtt tttcagaggg ttccatcaag       780
     agttttccac agttccagga gtttttttta agacaaaaat tcctcaatga agtcgttcga       840
     aaattgttga agaaaacttt atagtgattt atctagaagt tatttgaaaa tttcaaaaat       900
     aaattctatt tattatttta tacgtttgtt acttgacaca cactgaggaa actggtcata       960
     ctggaacatc tcgagattaa aatatgaaat tttgctacaa gaaaaagttt tgcttacata      1020
     cgatactcta atggaaaacc tttaccagaa ataaaagagt tatgagttaa ctattttaaa      1080
     atatttgatt tagttagaaa aacactttta gtatattttt tgaaatatat gaagacggta      1140
     cgcatgttga tgaaaccgat ttaataaaaa tttaatcatg cattttttac taaattatat      1200
     tctacatgga aagtaaactc ttattcttca tgctaggtgg attaggtcac caaaaatttg      1260
     ataaattata cacgcggaga aatagattgt acggtcaacg aaaaattggg tgatactctc      1320
     agggctaaca aacatttttg ttgaattcaa cccgaaatgt ccgttggttc tacaatcatg      1380
     attgttgtca ctcagtttga catgtttgtt aatccagcaa tcatttttgc catgttgaaa      1440
     agtttgtttg ttaaaccgat aatgttaggt taagtattgt tttgattcca tttcgatgtt      1500
     ttattttatt tgaaaataat aaaacaagcg aatgtatatg tagaaaaaaa gttttcgaaa      1560
     ataattcttc acaaatgtat tgaacaatcg ataatatgga aaactcatta tgttttggat      1620
     taaatagaag tcaaatctta ttttccagtc tcatattctt ataatattaa gcaacaatat      1680
     accattttta tttttttaaa tgaaaaattt acgcaaacct caataaaagc ttcatttata      1740
     tttttcctgg attaaaaatt gtaaaattga ttttaccttt gcgaatttgg agtagatact      1800
     gtcccatgtc ccattacgct tgttttgttg gctgtcatgt ccgatcgata ggatgccgtt      1860
     tgtggaacca tagcattggc aataaattcg ctggaatttt tggaccttga ttaaaatttt      1920
     accgagctgc cgttctacgc gtctcgcgat ccttaaggtt tacatagaac atgggacaat      1980
     ttaattacat aatttaacaa acatcaaatg ttataaatca ctttgccttc aataaaacca      2040
     attgtatcat ttttgaataa tgaaaataac gatgttttga ttggtgtgta cacagtgcag      2100
     ttattctaag cgtgtagaaa atgcattgtt atatcaaaat aacattgtta atttgacaaa      2160
     ccttgattat tgaagtgaca tgttataaaa aaagttgtgg atttgaactc aataaacagt      2220
     tttttttatt aaaccttgca aaattttcta tgtgtgataa ttttatttca tgtaaacata      2280
     aataaaaccg gtattttgta caactttggc gacctgtagc tcaaaattgt tacatgctgg      2340
     aaaacttcta agagtggtat cagattcagc aatcccaaat tcactggaga catataattt      2400
     gatcctttag atacgcagaa atgttatttt tttatgctgt ggaaggaatt gtaaataaaa      2460
     tttcaaatgg gtttggctcc gtaatgcctg atagcgcttg agcttttgaa taaacaaata      2520
     agtaaaacat gcgaaaaata gtttatgtcg ttctttttaa tcgtattctt atgaaaaata      2580
     tttatatttt gaattagaat gcaatacttc attgacggac tgatttcatc aagaatttgt      2640
     taactcaagt caaccttgga acattgaccc tggtatcgaa aataagtttt tcagcgataa      2700
     tgatacattc taatgaagtt ttaactgaat agaaagcaaa aagtgaaata aaaattttgc      2760
     ttcgatttta tgtacaattc gattttatgg acaattttga aatcaaaatg tccactaaat      2820
     cgaggtatac ctg                                                         2833
//
ID   DNA-TA-7_CQ repbase;    DNA;    INV; 953 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-953
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 57-57 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity. 10 bp TIRs. TA TSDs.
XX
SQ   Sequence 953 BP; 328 A; 200 C; 168 G; 257 T; 0 other;
     ggggaaatat accctttcta atcaaacacc tatcttcgtc atatggagag tttgatgctc        60
     gattaaagct ccaaaaatac tatttaggct ataaacttac cagcaacagc accgcctcga       120
     gtaagcacgc aaatttatgc catttactgg ccaaaaagat caaatttaat gcacttttga       180
     tcataatttc tattttgcga gaccatttct catcattttg gtggcacaca catccacacg       240
     caagatcaga ggttaactgc ttaacgaaag tcgccatcaa tatcttttca cttgcgctaa       300
     cgatttcaaa gcgcttaaga tataaaattg cttccaacta ccggcaacat gttcttttga       360
     ccattactta gtcactcact tgaaaaataa tcccgaaaca tgtaaataat tagcaagcgc       420
     catcaaaaaa acaaacgcgc taagtctttt gacgtttcaa ttttgactac ccattccaat       480
     cgaaggctga agaaaaccga gcgagaagcg aaggcaaata aagaacaaag ggtggccacc       540
     aacaccacca acatgctggt gcagcgcctg ttggagtgag caagtgctgc caggaaactt       600
     tcgctataaa tgctactttt cgtgagtgtt cgcttaaaat ttcatcaatt ttggcagcac       660
     taagcagacc caaaagagcg ctggaagaaa aaaagaacta agctgaaaat agaaaaatgg       720
     gcgtggccca atgcactcga ctgattagaa tgcatttttg aaatattttt tttaaatgct       780
     tgtaaaagga atagcataac ttttaataaa agtgaaaata aacagaaatg ttcacaaaaa       840
     gttgctctac tcgttggtgt acttggtttt agtgaatttc aaggaacaat ccagattatc       900
     cagcatcatt caaacacgac cgcttattag gcttaaaatg ggcatatttc ccc              953
//
ID   DNA-TA-8_AAe repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1277-1277 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TA TSDs. TIRs are ~54 bp long.
CC   This
CC   family is inserted as a part of DNA-TA-5_AAe, Gypsy-78_AA,
CC   Shinagawa-3_AAe, Shinagawa-8_AAe, and TE-1_AAe.
XX
SQ   Sequence 192 BP; 52 A; 47 C; 46 G; 47 T; 0 other;
     gggtgcagaa ccacttgggc acttccagat tcactttggc atggggggtt tttctcggcc        60
     gaattttctg aaactttgca ataagaagcg cttcagtacg acgcacattg tggccaaata       120
     tgagctctgt agctttcaaa aaaccccact gccgaagtga atcaaaagtg ccaagaatag       180
     gatccggctc cc                                                           192
//
ID   DNA-TA-8_CQ repbase;    DNA;    INV; 2102 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2102
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 58-58 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >88%
CC   identity. 11 bp TIRs. TA TSDs.
XX
SQ   Sequence 2102 BP; 775 A; 269 C; 360 G; 696 T; 2 other;
     cacggagaga ctgtgcccag aaattttaac aattaaaatt gttgatttta ctttcgtaaa        60
     ttttaacaaa aacgtacttg ttactgccaa tattccgtta aaataactaa aattcagtat       120
     ttatttaata acctgtttgt tgaaaatgct agaggcaaaa agctaacaga tttcccgaac       180
     tcgaatgaac gtgctcgact gttagctttt gttttaggaa aatcaaaaat tttgttggtt       240
     gaatataatt tacatttggt tgaatattta gaagatgaac ttgggtttgt ttacgtctgt       300
     catttgaagt caggattcga acgagagcgg tcggtttgtt gagtttgtgt tgttaattgt       360
     gaagtaagag gatgtgaaag gtgaaaatca cactatttgg ctaagttgaa gtggcaaatc       420
     gaagtgcaca ctgctgcaac tgtgaaggtg gaattggtga gtaagtttgt tgatgatttc       480
     tttgcaggtg ataaactatg aagagcaaga cgaggacatt cgcaatgggg acctctgatg       540
     cgaggggact ttatgataat gtttggagga aagagagggg cagtggaagg aagaggcggg       600
     ccaactcttg cacgacaata cttgcacggg caaatttaac aaaatgttgg ttaatctaag       660
     taagtatggg tttaatttta cacaacaatt tatctattgt gtttttaatt agaaaactga       720
     atcaccagga accttcgtgc ttacgatgga tatttcagaa tcatcaacca taaaatacat       780
     ggaaatgcgt acacattata tcaaaataaa aattcgatgg tgggaaatgt ctaaaaaaat       840
     aaaatatata aaagatatam aaaagaagat attaatattt taaaaatgct gttgaaaaag       900
     actgctcaat aaactggtaa gtaaaactca aaatattgtt ttcaggaatc ggagtacgtt       960
     gaataaattg aatcaaatgc aatgaaagta tgttgccaaa agtagttgtt aaattagtgc      1020
     aaactkggta agtagcatta ttgatatttc ttgtttataa ttacatttat ttacgttcct      1080
     tttatcagtt tagagccgga attaattttt ttattagatt aataataaat ttcatatgtc      1140
     tatttgcagc aaaaggttcg ccttggtgta aattctgtgt ccaacctcaa gaaaaataac      1200
     taaacatgag accgttgtag atgatgacga cttatcggat gatttctcag tgatggtaag      1260
     tgaatacaac acttaattgt atacaacata ataaaaatat aagcttaaaa cttggtgaaa      1320
     tttttgctcg gtttctactt ttaaggaatt tacgagaaat taaacatatt ttttgaacat      1380
     gtttaacaaa atttgtaaaa tgcttttttt attataattt ttttaaaaca ttaatcaaac      1440
     ataacatgtt ttataataac aattaaaaaa atacaaataa gtacaagtac aacaagttaa      1500
     tttgtgaggc attattacaa aatttactgc aaattaaata aaaatattgc taactacagc      1560
     taattactga ctacatgtac gaatattttt ctgtattcaa gtaagacatt agttaaaaat      1620
     atagctagaa attcggccca gcctgtatcg ttaaataatt aaagaaaata tatatagaca      1680
     ctaacataaa ttatgtttaa ttaagaaatg ttttgttata aaccactaat aatttgctgc      1740
     atgcaaaaat atttcagttg atacaacgaa aaaaaaagtt aaaaaatagt tgaaaaatat      1800
     tgtccagcct gttttttaca gaatatttaa caattattca gctgaaaaca aaaaaaaata      1860
     gttaattttc tgaaaaaaat attctagcag tcgactgcta gaattttttt tcggtcattt      1920
     aaccaacaaa aatggcaatt ctaactattt ttttagttac ttttacctac tggtggtcag      1980
     caatttcggg ttaacaaaat caacaatcga ttgttgaaaa aaagctgtgt aaaaaattag      2040
     cccatacttt tagttaaatt aaccaagaat ttcttagatt tgccctggcc ggtctctccg      2100
     tg                                                                     2102
//
ID   DNA-TA-9_AAe repbase;    DNA;    INV; 3346 BP.
XX
AC   .
XX
DT   11-APR-2011 (Rel. 17.12, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TA-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3346
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2465-2465 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. ~35-bp TIRs. TA TSD. Similar to
CC   DNA-TA-6_AAe.
XX
SQ   Sequence 3346 BP; 1111 A; 588 C; 569 G; 1078 T; 0 other;
     caggtatgtt ccgtttttat caacacgatc ggcgattttc agttgacaaa aacggaaccg        60
     tgacaaaaac ggaataattt tcttagacaa aatattttac aaatttgaaa tgaaaattgc       120
     agttttgtca ggataataca cattttcatc atattaatgc acagtattga cgtttaagag       180
     ctgtgacgac catttagatt gtttattatt ataggctcgt aatgaaagtt gattgcagat       240
     tcctatcaat caatatgatt ttgatataaa tcattaatag tatcagtttt cttagttaga       300
     atttcaataa aagtaatata gaatattgaa acgataatca cataaatgtc ctatgcatca       360
     caaggtacac catatttgta aaaataacta caaagaagtg aggcaagctg atcatttttt       420
     ttaaagaaag attaaacaag aaacaacttc tttttctact gttcatcctc atccttcttc       480
     ttcttcttct tctttttctt cttctttatg gcattacatc ccaactgaga aagagccttc       540
     ttctcatctt agtgttctta tatacactgc cgcaactatc aactgagagc ttttttgcca       600
     aggtaccgta attcggggtg tagttgatca gtggggagaa gttgatcatt cccgtaccct       660
     catgtataaa ctgtcaagag agctatgatc cgatttcaaa tatcacaatt tatgtgatgt       720
     cgctctacct gatagctgcg cttgatgttc ctaaattcgg tttgacattc aagataatta       780
     taccatggaa aacagaattt ttaggaaatg ttttatgaac tgtataaaga caccatttaa       840
     ataaactgtt tcatacattc cagatatgtt cagtgaaccc agtttttaat tagcattgag       900
     gattaaaatc aattttcaga gaaaaaccat gttcttttag tgagcgagtt actaatttcg       960
     aagaaaattg catatcttta ggcgtttaat gtgatgtatt ctgcaattaa caacatttaa      1020
     ttctaaattt gaccgattta tcaaaaaaat ttgatttttc gagttttgat tcggatttcg      1080
     tgaactcaaa tttagtgaat aacatatctc tttaatttat gaaacctatc gcagtaactg      1140
     atcaacatca ccccggaatc aagaactcca attctgaaaa atgtttctgt tattacgata      1200
     agattttgtc aaaattccgt ttgtataatt cgatacacat ccattcagta caggtttaaa      1260
     aaatatttgg atgataatac atgcatccta cttggaatta tagaacagaa tctctcaaaa      1320
     gtgatcaact tcaccccatt ttacggtaca tttttttgca tttttggtca caaccgattg      1380
     atgattaaat gtggagttat gttgcgaaag ttttgcaatt gaaatgaata cttacacaga      1440
     aagaaaaatc catgtaaatt tcagcgtaaa atcatgcaca tgaagggaat gccagaaatg      1500
     tcgcaaattt acacgtcaca tcgtgtaaaa ttacaataac atcatgtaag tttccgctag      1560
     acatcgtgta atctagcatg gactctaacc gatttcgcga caattggcat aaatttacat      1620
     gatgttggtg taattttaca cgatgtgtca tgtaaatttg cgacaaatct ggcattccct      1680
     ttatatgcat tattttacgc tgaaatttac atggattttt ctttctgtgt acggtttcct      1740
     gagctttgaa ttgccaaatt taacattaaa atgattgtgg tgatctttct tctaaagtta      1800
     ttactaccaa cttcgacaag gatgcactaa tcgccaatct agaacagcac caccatcgcc      1860
     ttttagcttt aaggcccaaa cgcaatgata gcggaacggc aacggaaagc ggaaccagtt      1920
     cgccagcatg aactgtagca tgcttgtcga cccagacttg gttcactttc gttcgttgac      1980
     agctcagttg agatggtgtg attcatggtg gtgaaccggt tccgctttcc gttgccgttc      2040
     cgctatcatt gcgtttagaa ctgtacgtaa gatcacaaat agactggcaa taaactaact      2100
     taagttgtag ttttttgttg agtacaaata atattaaata actgagagag aggagacagc      2160
     tggcttagat tgcgagctcc caaaagttaa gggaacctgt caccaactgt cactggaaaa      2220
     ccaacacagt tattacagat aattttccaa atcgtttcct tcactcaaac acgtcagaac      2280
     atttgaccaa tgcaagagtg aaataatcat gtaagtctat cagcccgttc tggcaacaaa      2340
     atcttctaca gattgacaac tactgaaaaa ctaaacattt catatacttt gcaattggat      2400
     taaatggaca aatgcaaagc atatgtaatg tttagttttt cggtagttgt caaacttcca      2460
     ctcggctcat tagccataaa ccacgaatca taattaatca aaaacaagta ttctacaaat      2520
     tgcttagttt tgctggacct cttcccctac cccttggaac aggatctaat caattgctgt      2580
     ttgctataat ttgtgcaatg ctatcgagtt tgagagatag aagttaatgt ccaaactatg      2640
     acaaggtcga cagtcttatt aagaataaaa taaacttgat catacctctt gccgttgtac      2700
     acaacattga gttcattccc aagtgcatcc cttatcaaaa agagctgaac atgtatggga      2760
     tcgtccatta atcatgtaag cggtaatggg gggaggcggg ggatttgagg tatcttaagt      2820
     gccatacaaa ttatttttta ttttcataca aaaattcata ccataggggg agtatatatg      2880
     tctatcaaat ttacatagaa aattctttta agccatatta tataagaaaa aggagaggtc      2940
     tatgcaactc ttttaagtac gttgttgcta ggacgtggcc agagcaactc tcgattgttg      3000
     aaagatgggc caatcttatc caacagaaca tgctacgttt gaaaactcaa attgaataat      3060
     tgcataagaa gaagtcaaac cttattaaat cgtatatgac ttgacatcta ccatgtatcg      3120
     tagatgctca atattaacaa aatgacgaaa attcaactct gtggctatta aaaagcattt      3180
     caattgcttc aaaataagta tttagtttat attcgaaaca ttttgagaat ttaaaaaaat      3240
     caattttttt gtgttgataa aaacggaata atttgttgac gaaatcggaa cgtgacaaaa      3300
     tcggagcgtg acaaaatcgg aacgtgataa aaacggaaca tacctg                     3346
//
ID   DNA-TA-9_CQ repbase;    DNA;    INV; 419 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-TA-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-419
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 59-59 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99%
CC   identity. TA TSDs.
XX
SQ   Sequence 419 BP; 104 A; 97 C; 87 G; 131 T; 0 other;
     cacccaaaat tcagagtcga gataatcgtt ctctcaaaat ttattgaggg ctcagtgcca        60
     aaatcgatag aataatggta ccaactcaca ccatcataac aaatgagttc attcgttagt       120
     tgaatcaata aatctccaac aagtgtcata catcgacttc tgacttctcc ttggtcacca       180
     agctgtggtg gccgaggcag ctaagtcatt ggattggttt gtcaaaggtc tctggttcga       240
     ttcccgttgt cgacactttt ggttttttgt ttgacggatg aacttttttt gcaaatgaac       300
     ctcgagagaa tagttctatc gcccatctcg agctgtgttc tctgcgtccg tgaatggtac       360
     cactattctc tcgactcgag accatcattc tctcggacta gcgctgccag ttttgggtg        419
//
ID   DNA-TTAA-1_AP repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   24-MAR-2009 (Rel. 14.03, Created)
DT   24-MAR-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TTAA-1_AP.
XX
NM   DNA-TTAA-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-423
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(3), 659-659 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
XX
SQ   Sequence 423 BP; 139 A; 75 C; 72 G; 137 T; 0 other;
     gaggacgtcg cacccgcatg tgttgtctcc gtcttacaca cgtacgacat agcaaatgtt        60
     cgttcagcag attcaattgt gtgctgttag tttttatatt agagtgaatt gacctattat       120
     caaatttaaa ggtaagatta ttatctaggg ccccacgtag gcttttattc atattattag       180
     ttttaagtaa gttatgacct ttttgaaagt gtacatttta aaatgatcat aactcactta       240
     aaaataataa aattaataaa agcctacgtg gggccctaaa taataatctt acctttaaat       300
     ttgataatag gtcaattcac tctaatatca aaactaacaa cacactattg aatctgctga       360
     acgaaaattt gctatgtcgt acgtgtgtaa gacggagaca acacatgcgg gtacgacgtc       420
     ctc                                                                     423
//
ID   DNA-TTAA-1_CQ repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TTAA-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-733
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 65-65 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >89%
CC   identity. ~340 bp TIRs. TSDs are TTAA. Both termini
CC   show similarity with those of DNA-2_AAe. Likely a non-autonomous
CC   piggyBac element.
XX
SQ   Sequence 733 BP; 212 A; 157 C; 153 G; 210 T; 1 other;
     cactcaaacg ctcgggtagt catttgaccc ctattttttt tcttaaaaat ctcataactt        60
     ttggtagaat tgaccaattt ggatgcttcc ggttgcaaaa gatccagatt tgtctatatt       120
     ttcaactgtc agatggggga caaatatggt ccacttttac cggagatatt ccggattccg       180
     ttggggtacc tcggccctcc tatttgggtt tttggtcaat ataacaaaaa ctattccaca       240
     gaacaatgcc ggaaatgatg caaaacttca aggcatcatc ctaatacatc atcctgcata       300
     gatacatgac atggtcaaga ccttcgggca ccggaacagg ttccaaccgg aaacggttca       360
     ctgagctgat gtcgattggt gcccaactgg aaccggctcc ggtgccccgt aggacttaac       420
     catgtcaatt atttttgcag gatgatgtat taggatgatg ccttgaagtt ttgcatcatt       480
     tccggcattt ttctgtggaa aagtttttgt tatattgacc aaaaacccaw ataggagggc       540
     cgaggtaccc caacggaatc cggaatatct ccggtaaaag tggaccatat ttgtccccca       600
     tctgacagtt caaaatatag acaaatctgg atcttttgca accggaagca tccaaattgg       660
     tcaattctac caaaagttat gagattttta agaaaaaaaa taggggtcaa atgactaccc       720
     gagcgtttga gtg                                                          733
//
ID   DNA-TTAA-2_CQ repbase;    DNA;    INV; 697 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TTAA-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-697
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 66-66 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity. ~20 bp TIRs. TSDs arel TTAA. TSD sequences and
CC   terminal nucleotides indicate that it is a non-autonomous
CC   Kolobok element.
XX
SQ   Sequence 697 BP; 220 A; 122 C; 122 G; 232 T; 1 other;
     ggggttacat acatgtaaat cgacaaaaat gtcagaggtt ggtgtgagca cacacttaat        60
     tttatttaaa atctgttttc agggcattaa aatatacatt ttcatctatt atcaaaacaa       120
     atttgaagac atttggttgt atcattgccg agatatagct atttgaagtt agcagtttca       180
     aaaaacgggt gccacgatat ctcaacactg ccttgaccaa atcggctcaa aattttggtg       240
     aagactcgtt aaaccggtcc tgtgtgcatg acgaaggccg attttcaaaa agcttatttt       300
     aaaaaaagat aaaaatattt ttctgttttt catataaaaa atcgtcagtt tttgattttt       360
     gtatttttta aaagcaaaat ttcaaaatcg ggcttcgtca tgcacacggg atatgtcttg       420
     ggagtcttca ccccgaattt cagccaattt ggtccatccc atctcgagat atcgtggcac       480
     ccgtaaatca actcggtgtt tcgagaaaaa cgctcagaaa gtttgacagt ccgctttgcg       540
     cacggcaaaa tkttgagctt aaaatcgtct ctaactcagt ttaatcatga aatatcttca       600
     tgaaactttc aggagtgatt gaaaatcatc tttttagtgg attcaataaa ttttctgtaa       660
     tatgaaattt tgtgattttc tacatgtatg taacccc                                697
//
ID   DNA-TTAA-3_CQ repbase;    DNA;    INV; 1394 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA-TTAA-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1394
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 67-67 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. ~660 bp TIRs. TSDs are TTAA.
XX
SQ   Sequence 1394 BP; 440 A; 253 C; 257 G; 442 T; 2 other;
     gagcgagtcc acgagcaggg catacccctt tgtatgggac stcgcwtgga cctcaccaat        60
     ctgcctgaaa ttttcagggg ttgtttgtac atataaaact agcatctggc caaaatatga       120
     gcactctagg tcaacgggaa gtggggcaaa tcgggacaca aagtttgaag gttcaaaaac       180
     gtcaaaaatc ttaaaaaggc tataacttag gcaaaattca atttaatttc aaaattcaaa       240
     atgcatctga aagggcttaa aaaatgcaac aaaatgcagg gtagagcatc ccaattggtt       300
     aattctaaag ggagttattg gcattttagt gaaaaaatag cataattttc aaactcaaat       360
     aaaaaagtgt tccatccaga tatcaactcg gttcgacctg cagcttgtag gggacatctg       420
     ggactaccat ctgagactga gaacgctttg ggtaaggcag tttaacatat tgaatagaca       480
     cttttacttt tagtgaattt tttggttgta aatttttgct cgggggaccc cttagatccc       540
     attttctggt gataatttta tcatattcgt gttcctgaga caatttcaca ttagaaacat       600
     gcataaaaat gtttattttc atccatttta accctttaaa aaatgaaagt taaaaaaaat       660
     tgagaagctg cttttttctg gtgtcatcta gtatccttgg aaacgaactt gattttcaat       720
     aaatgcgaat cgaagatttt ttttaacttt cattttttaa agggttaaaa tggatgaaaa       780
     caaacatttt tatgcatgtt tctaatgtga aattgtctca ggaacacgaa tatgataaaa       840
     ttatcaccag aaaatgggat ctaaggggtc ccccgagcaa aaatttacaa ccaaaaaatt       900
     cactaaaagt aaaagtgtct atttaatatg ttaaactgcc ttacccaaag cgttctcagt       960
     ctcagatggt agtcccagat gtcccctaca agctgcaggt cgaaccgagt tgatatctgg      1020
     atggaacact tttttatttg agtttgaaaa ttatgctatt ttttcactaa aatgccaata      1080
     actcccttta gaattaacca attgggatgc tctaccctgc attttgttgc attttcgaag      1140
     ccctttagat gcattttgaa ttttgaaatt aaattgaatt ttgcctaagt tatagccttt      1200
     ttaagatttt tgacgttttt gaaccttcaa actttgtgtc ccgatttgcc ccacttcccg      1260
     ttgacctaga gtgctcatat tttggccaga tgctagtttt atatgtacaa acaacccctg      1320
     aaaatttcag gcagattggt gaggtccaaa cgacgtccca tacaaagggg tatgccctgt      1380
     tcgtggactc gctc                                                        1394
//
ID   DNA2-10_BTa repbase;    DNA;    INV; 1035 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1035
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 901-901 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1035 BP; 324 A; 232 C; 218 G; 261 T; 0 other;
     ccctggtaaa aattggcgat aggagctgcg tttcaaaata ccataggagt tcttatagcc        60
     gactaaagaa ggctattgaa aatcatatag ctggctgtag aaagcggagc aaatcatata       120
     gccgggctat acgaagctat aaaaaagtat acagtcgggc tatagttcct atcgccgggc       180
     tttacacttt atcgccattg gctataaaag gctataagaa attgtgtaga aattcgtgtg       240
     ctttggaaat cattaagttt gatacggaac taccttaata tttacaaaac acacattata       300
     ttttccttta aaacatattt tttttcatca attaaaatga gaatagtcca tacagagtgt       360
     gcaaacattt caaaatcatg agttgaaaaa cgctgactcc gcgagattaa atattagagc       420
     ctaacacaaa gcggagcggc gacgcactgg cgcctacaaa cctaacaggg atacttcacg       480
     cattgcgcgg cggcgcactg gcgcctacaa acctaacagg gatacttcac gcattgcgcg       540
     gcgacgcact ggcgcctaca aacctaacag ggatacttca cgcattgcgc aatgcgtgaa       600
     gtatccctgt taggtttgta ggcgccaatg cgcgtttcgc gctctctgcc cgcccgccgc       660
     gccgcagcgt gccacggcgt ctgaagcaac tatttcacac cagaggtatt gcacagtatc       720
     ataagaaatt gaaggcgctc caacatatta agaatgacag gcatccttca aaagtacgga       780
     gctttcctcg caaaataaat caagatacta cggcacaaaa agagagcggt agtccaaaaa       840
     ctaactaagt cctagtatcc gtatttagta acgtttagca taaactttat cgtctggctg       900
     ttgcttaatc gccatcggct ataaaaggct ataagaaatt gtacagccgg ctacagaagc       960
     tattggaaat cttacagccg gctttaggtc tatagtattt tggaacacac attctactgc      1020
     caatttttac caggg                                                       1035
//
ID   DNA2-11_BTa repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-11_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-212
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 902-902 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 212 BP; 71 A; 37 C; 37 G; 67 T; 0 other;
     caccgaaaaa aaagtgaagt tgatttaaca ttctggatgt aaaaaaagtg tgcgagaact        60
     tataaaatgc tgaattaccc gctacagcag ttactttagc aatgccaaga tgtaaaacta       120
     actgctgtgg cgggtaattc agcattttat aagttctcgc acactttttt tacatccaga       180
     atgttaaatc aacttcaact tttttttcgg tg                                     212
//
ID   DNA2-12_BTa repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-12_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-269
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 903-903 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 269 BP; 78 A; 55 C; 53 G; 83 T; 0 other;
     cacggaaaaa aagtgtcagg ggttatcccc taaaattgtg gtactacccc aatttgttgg        60
     atgatatgga catttccaat taattttggt agcaccgcaa ctcaagttgg ggtagtaccg       120
     caacatttgg gttagtaacc taatttattg ggatactacc acaattaatt ggggtactac       180
     cacaattaat cggggtatta ccacaattaa ttgggaatgt ccatatcatc caacagttgg       240
     gacttaaccc ctacctcttt ttttccgtg                                         269
//
ID   DNA2-13_BTa repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-13_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-274
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 904-904 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 2-bp(TA) long.
XX
SQ   Sequence 274 BP; 87 A; 44 C; 49 G; 93 T; 1 other;
     gatcgtattc gatacatcaa acaggtgaga ttgtatcgat atcgattggt tcaaaacata        60
     aacatagcct caaaagtcaa tttagaaatc ggagggaacg ggtcttttgt aacagatktt       120
     ttattctttt gagtaccaaa tgccaatgca aagtgaaatt gttaggaatt ttctcatttt       180
     cagcttttcc aacttaaatc ctaatagttt ggtttgaggt tatgttctat tgttttgaac       240
     caaacgatac atcgaaccat tatcgaatac ggtc                                   274
//
ID   DNA2-14_BTa repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-14_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-317
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 905-905 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus. TSDs are 2-bp(TA) long.
XX
SQ   Sequence 317 BP; 85 A; 67 C; 71 G; 94 T; 0 other;
     cagggtgatc cagggttaaa cggccagact gcaggagcgt gttctatggg tcaaaataag        60
     acttttttgt tgtataaagt tttttccaaa agtgccccca gtcggagcta cggcccccca       120
     aaatttcgga aagtaaatcg tttttcctga attttggcaa cggttgtgaa ccaaatctca       180
     tgaaaatttg tactcccctg tacttttatg ccctgaattc ataaatgatc taaaaaaaat       240
     cgaaatctca atttaaagag ggggtttggg ggtgtttcgg ctcctgcagt ctggccgttt       300
     aaccctggat caccctg                                                      317
//
ID   DNA2-15_BTa repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   30-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-15_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-259
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 906-906 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 259 BP; 68 A; 52 C; 43 G; 96 T; 0 other;
     tgaatcagtg agaacgaaaa cacaccaact cggtaactcg aaaatgctca attttcatta        60
     aagacagtca attttcataa aggtcattga agttagcgca tctgttccaa cttggacctt       120
     taaagtgtcc ttaagtactt gtctttcggc accaaaaatc tttttcttag actaacttct       180
     tcacctactg tgcagttttg tgtgtgtctt gattattttc atttttccga gttggtgtgt       240
     tttcgttctc actgattca                                                    259
//
ID   DNA2-16_BTa repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-16_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-210
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 907-907 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 210 BP; 75 A; 28 C; 32 G; 75 T; 0 other;
     cacggaaaaa aatggattgc tgatttaaca attaaattgt taaaaaatat gtccgacatg        60
     tttcaaatgt acattttaca atagtggaaa gctaatttaa ccacgggggt ggttaaatta       120
     gcatttttta ttgtaaaatc tacattgaaa catgtcggac acttttttta actacaaaat       180
     tgttaaatca gcaatttcat tttttccgtg                                        210
//
ID   DNA2-17_BTa repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-17_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-331
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 908-908 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 331 BP; 120 A; 53 C; 49 G; 109 T; 0 other;
     cccaagtagc acagtgcaac gaaaatattg aaattaaatt gcaatttgat ttcaataaaa        60
     ttgtaatttt tttaccatta aattgcaata tttttacatc atttagtcga tttatgccga       120
     ttttaaacaa tcaacaaaat gagctccatg tgtcagaaag ataggcaata tgcaatgcaa       180
     tgaaaaattg caacttattt caattttatt gcaataagtt tcaataaatg gggccccttc       240
     aaataggagc taggcaacat acacaacact cagtggaatt gcaatatttt tacaatgtaa       300
     ttgctactta ttgcaatctg tgctacttgg g                                      331
//
ID   DNA2-18_BTa repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-18_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-220
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 909-909 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 220 BP; 68 A; 35 C; 41 G; 76 T; 0 other;
     cactgaaaaa aaagtatggt gacatttact atgagtctac ttgatttttt acacagtgat        60
     actatttagt ggaaataacc agaattatag tagtattcgc cagaactctg gtgattctta       120
     ccatagtatg gtaaatgcca ccatagagtc tggtgtttat taccatattc gtatcactgt       180
     gtcagagatg gtaaaatcta ccggcatatt tttttcagtg                             220
//
ID   DNA2-19_BTa repbase;    DNA;    INV; 382 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   23-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-19_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-382
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 910-910 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 382 BP; 138 A; 45 C; 46 G; 153 T; 0 other;
     ccctagtagc aatgaccttt aaaaacattt ttcaaaaact cttaaaaaac tgttaaaatt        60
     ttcgtattag gaaacccttt ttggctattt tttaagtaaa atttacgaga agtaaaattt       120
     aagaaaaaag tgttaaaaaa acttaaaata tcactgtagt tttttaacat tttttcaaac       180
     atttttagtg ttgaaaaact acagttgata ttttaagagt ttttttcact tttttactta       240
     aattttaccg ctcgtaaatt ttacttaaaa aaatagccaa aaagggtttc ctaatacgaa       300
     cattttaaca gtttttttaa gagttgtctt tttgaaattt aagagttttt aaaagttttt       360
     ttaacagtcg ttgctactag gg                                                382
//
ID   DNA2-1_BTa  repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-255
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 893-893 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 255 BP; 79 A; 52 C; 48 G; 76 T; 0 other;
     tcgtcacctt ccaggcaaag tatcacaagc gccatgcgac gtttaaaaat ttccgccgcc        60
     attttatttt tttacagaga aattgttcaa cgaagctgtc cgaaaatttc actgaatttt       120
     ctttgtgctg ccgataaaat ttagtgaaat ttccaaacag attcaaccaa caatttctca       180
     gtaaagaaat aaaatggcgg cggaaatttt taaacgtcgc atggcgcttg tgatactttg       240
     cctggaaggt gacga                                                        255
//
ID   DNA2-1_CQ   repbase;    DNA;    INV; 1805 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1805
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 68-68 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 22 sequences with >92%
CC   identity. 2-bp TSDs. 11-bp TIR.
XX
SQ   Sequence 1805 BP; 597 A; 327 C; 310 G; 571 T; 0 other;
     cccaagtaac attttcagtt ttgtacctat cttgaggaga gattgaagtt atcttagcta        60
     aaaatgacca taaagccatt ttatctccag gacaacaata aatcagcatt aaacctgagt       120
     taagagcaaa gtggactatt ttaggaggtt atcaagacca tttattagga gtcatctaaa       180
     actcatcagc ttagacattg atttttaaaa cactctgcag gtgtatttaa ttgctaaaat       240
     aaaacttatg ctcaagcttc ttaaatttat aaccgcacag aagaggtctt caagactgaa       300
     ataaactttc attaaagatg ttttctctcg ttgaagataa aattgatttg tcgaaggaaa       360
     atcagttcta attataatct cgttaaattc aatcattctt tatgaaataa atcacaaatg       420
     gccaatgaaa aaagataaaa ttatattgat aactataaaa taatatcaaa ataataaatt       480
     actgtgactt tacgcagccg ttctaaccga aaaattcttg ccatcaaaat ttcactggtc       540
     agttttctta gatacctcga aaaaatatgc atcgaaggca tgaatcgttc aaaattgcat       600
     cgattttttt attttgatgg accgattaat tatttttttt tctgaaaaat caacatggct       660
     tccatttttg gccgttgctt tttcgtgtta atatggctga tctcataaaa actattctct       720
     cttactcaaa gcagttatta gggccatttt tcttaagaag ctcttgtaca agaaacttta       780
     agagctatgt ttcttgcgaa gctcttgttc aagattaagc aagaacatgt agactgcagt       840
     gagctttaag gcgattttaa ccaagagcaa aaggcgtagt actgcgaccg tagcgcatgc       900
     gaattttagt tagcaggagg tagatccaaa acgtttttta tggttatttt ttcatcgttg       960
     gataaaaaac aaaatacatt ttttttcata ttctttattc atttattcga ttgggatcat      1020
     cataagtttt cctcgcatga aggaatttac cgtcgacaca acaacactga ttttaataaa      1080
     caacactaga ccaacgttaa aacactagca ctccgcgacg aatttatccg cttctcggaa      1140
     cgccttatcc agcttgtcct cgaaaggctc tgacggacaa acggatggcc taactgatga      1200
     tttgtagctt gtcgattctg cgcgtcggag agagcttcac ggtagctacg gaatcggcgc      1260
     ccatgatgat tctcgtgtta ctcgatcagc acgtgccgga aaaaaacatc tactgcccat      1320
     gcatgccaat ggaccaaatc ggcatgtact cgatcaccct cggataggtg tactccgtta      1380
     catccgcgct ggagccggaa acgggcgaaa agtatcactt gtttaccggg atcacaaatt      1440
     ttggtaaaag tttctttgac actaaaccga ccgactgtac aaaaaaatgt gatttgacag      1500
     atcaagttca aataatctgg aaatatgctt tcatagaaca gagtagtttt aatttagttt      1560
     cgaagcagtt ttgacaatgc ttaaaagtct tataaataac ctctctggga tagctttaag      1620
     agaaacaatg aagtgtgata taaaactatg ttccatgctc ttaaagtatt cttaaagata      1680
     tttttaaaac tttcgtatca taaacccagc aagttttgat caatgttttc ataaaacaga      1740
     aaagcaaatt tcaaaccttt tataaaacct gttaagaagt aaaggcattt tgcttgttac      1800
     ttggg                                                                  1805
//
ID   DNA2-1_DAn  repbase;    DNA;    INV; 1026 BP.
XX
AC   .
XX
DT   22-AUG-2012 (Rel. 17.09, Created)
DT   22-AUG-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-autonomous DNA transposon from Drosophila ananassae.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1026
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ananassae genome.";
RL   Repbase Reports 12(9), 1767-1767 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs. 11-bp TIRs.
XX
SQ   Sequence 1026 BP; 296 A; 186 C; 210 G; 334 T; 0 other;
     cccagcagta ctgaaattcc tggccccgac ttttccggcc cgaatgtcaa atttcgatcg        60
     aaaaacaaaa acaattcaat aaggtttgct cttcgaacgt caaaacaaag taggcgaact       120
     aattctgccg gccctctgct gctgctagag ttcgaaatta tgcatattcg atattagtta       180
     ttaatcacta atattttcta gtcattctaa atattttgcc cggaaaactt tcaccccatg       240
     gttcaatgat taaggtatct gcctgttaat cgtaaggtcg tgggttcgat tccaagcgga       300
     aaagtcttta ttatgagttg atttttgttt actttcattt tattttaata tcgcagtctc       360
     aaaataaact gttatattca atactttttt ttaaacgggg attcttaata attgagattg       420
     ttttaaacat gcaaatttgt agaggtatat tatagtcagt cacaaagtac gcgcgattcc       480
     ttgatagctt agaggcgtgc atgtcggtcc agtatacaaa agcactaagg ttcgaatccc       540
     agggtgagta attattaaat atagttttca atattaataa tgtaatgtta tttaacatat       600
     taatttagtt tacaacataa attaacagca atttttaagg aattcataaa aaataatgat       660
     tatcaaatta gaagaatgta aggggaaatt tttttcttta attttgggtc atgaatgcga       720
     cctgatttag ccacgatttt caccgcggaa tcatgctttc ttttcgggcc tgattccgct       780
     ctgaaattca ggtctgaatc aggggcgatt tcgagacaat tttcacgccg gaatccggat       840
     tcgaaatccg ggcggattca gggctgattc atgcctgaaa tcgaattccg ggccgagagg       900
     acattttcaa aaatttcagt acaaaattcc gggccgcttg ttctagcttt ccggttggat       960
     tccggggtga tccgggcgga tccagggtga atccagggtg attccggggc gattggtact      1020
     gctggg                                                                 1026
//
ID   DNA2-1_LMi  repbase;    DNA;    INV; 575 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-575
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2962-2962 (2014).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus. TSDs are 2-bp long (TA).
XX
SQ   Sequence 575 BP; 203 A; 106 C; 102 G; 164 T; 0 other;
     gggtaaggtg gtacaatttc gatcatttcg gacaaatgtt attgtaactg gaaatatatt        60
     gagaaaagat gtaattttaa ttatagcact tgttcttgga tgtttaacta atatgtaaca       120
     caaatattag acaattacaa atgtcggtat agacacacaa aaaagttaca gaattgagaa       180
     aaatcgatcg aaaatgtacc acactaggta caattgtgat cacttcctag tagaattttg       240
     actaagggca tcttccacat aaaaagcact ttttccgtca ggcaccaacg catacttcgt       300
     tgtaccaaac attgcatttt gggtagagaa tctagtcacc cttaaataga aaatttataa       360
     gagctcgtta gactaagtag cttcacttac ctcctaacgt gaaaaaattt atctctcctt       420
     agcacaaagt ggtgtattct tggaaaagac aggaggagct gtagaaacct gctacgctac       480
     aatgccacac aacgagacac tacgagactg acaaatggcg cgaaaattta tgttgatcag       540
     aattgtacct atatcgaatt tgtaccacct taccc                                  575
//
ID   DNA2-1_RPr  repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-407
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3220-3220 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 2-bp long. ~98% identical to the consensus.
XX
SQ   Sequence 407 BP; 131 A; 63 C; 76 G; 137 T; 0 other;
     tctgtacctc ggagggaaaa ggcaccatgt ccattttttt cgattttcag attttggcat        60
     cattttacaa attttttgtt gctctttcta caggtgtaaa gcactatgtc ctatgtttac       120
     tattaagcga tttatgtatt tttaaaaagc gctatgatac ttcattactt aagggtaaaa       180
     ggcactacat gggcataaat ttttttcaca atggagatca aaataaaata ttttaaaata       240
     tgggaggtta agtggccata ccaactgtaa taattatggt gagaagtaca ggaaagagta       300
     caaccggaaa agtggaacaa aaaatgaatt tggaaaaata tcttcatttg gctcccctgt       360
     aaaatttact ttttgtgaca tggtgccttt tccctccgag gtacaga                     407
//
ID   DNA2-1_TCa  repbase;    DNA;    INV; 1445 BP.
XX
AC   .
XX
DT   22-MAR-2009 (Rel. 14.03, Created)
DT   21-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1445
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 663-663 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is TA, often in multiple copies. Unclassified (possible
CC   non-autonomous Tc1/Mariner).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1445 BP; 502 A; 230 C; 222 G; 491 T; 0 other;
     cagggtgttc cgtctaaacc ccacattaga agtattggta gttctaataa tgatagtcat        60
     ctgaaaattt gtatacaacc ataatctctt aggtcctgct caatgaaaat attttcaaga       120
     tggcgacact tccggttata ccggaagtcg ctatcaactt tcttatttta aatggaaagc       180
     tatatttttt aatgcgtttt tggattacta gagttatttt aaggtagttt tcataagctt       240
     tccctatacc taaatttagc cgtttacgaa atatttaggg tttttaattt ttttttggat       300
     ttgcaccttc cagttcaaaa atcgataact ctgccatttt taaaaatttg gaaatatttt       360
     ttagctcatt tgaaagagga agcctagatc tttcctttgg tgttttcaaa tttctaaaaa       420
     agaataacaa accccaaatg tttaaagtta agttttcaga actttaagca cccataactc       480
     aattttttca aatgaaatgc cacaagtttt atttcattaa atcgtagaga atttaattct       540
     gcatcgatct gtattagcat tccctatact tatgtttaat agttttcaag ttacaataac       600
     tttttgttgg gattgagaaa ttcattagcc ataggccttt tctcataggt tgccatggaa       660
     acgagagaaa aaatgtgaga aattaaagtt ttttaaacca acattcaatg aatttatttt       720
     gttttcacag gacggacaac acaattttga acagagtttg tcgtttgttt aatcagaaat       780
     gtttttatgg caaactatgc aaaaatagct gtggttagta agaaattttc tacaatgtca       840
     aaaaaaacca acataacttg aaaattatca cagataggta tagggaatgc taatacagat       900
     cgatgcagaa aaaaattctc ctccatctag taaaataaaa attgggacat cccatttgaa       960
     aaaattaagt tatgggtact tgaagttgtc caaacttaac cttaaaattt ttgggtttat      1020
     taacttcttt tccaattttg aacacactgg agaacagata taggctttct cttttaattc      1080
     tccaaatatg atttcgaaat ctctaaaact aagagagtta ccgatttttt aagtgacagg      1140
     tgcaaatcca aaaattttca aaaaatctta aatatctcga aaacggttaa acttaggtat      1200
     agggaaagct gataaaaacg gccttaaaat aactcaacta atccaaaaac gcagtgaaaa      1260
     acatagcttt ccatttaaaa taagaaagtt gatagcgact tccggtataa ccggaagtgc      1320
     cgccatcttg aaaatatttt cattgagcag aactcaacgg attatggctg agtaccaact      1380
     ttcaaataaa tatctttatt agaactttca atacttctaa tgtggggttt agacggaaca      1440
     ccctg                                                                  1445
//
ID   DNA2-2_AP   repbase;    DNA;    INV; 699 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-2_AP.
XX
NM   DNA2-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-699
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1735-1735 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   2 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 699 BP; 275 A; 99 C; 70 G; 253 T; 2 other;
     tattcaaatt ctgattttta gaatttttaa gtacacctaa agaccatatn ttcaaattcc        60
     tgatattttt tgtactacta ttaaagagtg tcctgtggct atacaaactt ctatttttca       120
     aatgagaatt tcctttttta ctgcaaatta tttagcagat gatgttcttg taaatgtaga       180
     tgtatctaaa tcaaaattct aataagtagt tgctgaatta ttaaaatgtt tatactaagg       240
     ataataatcc ttaaaatatg gttttacaat aaaaaactta aaatacctaa tattagatgt       300
     agtacctact tattcactat tatcagtata cctacttaat aatttttaca aattatttat       360
     cttgatagat caatggtaat tagtactaac aactaactac taacattttc aaatcatcta       420
     agcccccaaa tctacttaac taatntccat atacgtatta tccttagtac acaaagttat       480
     actataactc aaaaactact agttcgaatt ttgatttaga tgcatcaaag ttctcaaaaa       540
     aaaaatatct gctgaataat taaaagtaaa aaaagaggat tcctatttga aaaacagaag       600
     tttgtattgt aacaacatca tccttaaatg gtataaaaaa ttcaagtatt cgaaaatctt       660
     caagtgtatt taaaaattcc aaaaatcaga atttgaata                              699
//
ID   DNA2-2_BTa  repbase;    DNA;    INV; 1117 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1117
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 894-894 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1117 BP; 370 A; 190 C; 168 G; 389 T; 0 other;
     cccaagtagc attttgcaac gaaaaaattg caatttaaat gaaataaaat ttccagatga        60
     tttcaacttt cttgcaagaa aattgcaatt attttacaac atctgacccc ctcattgtaa       120
     aaaagttgca attttttttt tgcaaagaaa tttcaatatt gacgaccttt aaatttcaac       180
     ccctaaattt tccggggaaa ttataataat tcgaacccat gcttacctaa tgtcctacga       240
     cgtttagcag cataaaatac cggacgccct tgagtgggct tgaacccgac ccgcgaatgt       300
     catagcggag cactcttcca ctgagctaca gggagctgat gatgagctgg gttgaaatca       360
     cgcctgttaa ggctgttatc gcatgcattg cgtcagtgcg tggctcaaca ttcatcatag       420
     atttgattaa cgccgttttt ctcaggcttc tttcttttgc ctattattta ttttttttcg       480
     tgttatttat ttttttcata ttttttttgt ctgatttttt ttttcgatat cacgtaatag       540
     gtactcacac taaatttaca ccggtgtaaa ttacaccaca tactaacttg agaacttaaa       600
     aatattttca aaaaatattt ttaaaatatt ttcaaaactt tcttaaggaa tatttttaac       660
     atgcatgttt acaggcaata tttttgaatt attttaaaaa tattttttgt aaacattttc       720
     aaaatattcc tttaaaatgt tttaaaaata ttttgaaaat attttaatta caatattgcc       780
     atgaaaatat tttgataaag gtgacaatat tttcaaaata tgttgggcta tatgggttag       840
     gtgagacatt taagtcgaaa aaactttaaa acaactagag aattggatgc caggcacatg       900
     gcgtgaattt gttacaacat gattgcaccg aaattgcagt ctttatagtg ccttgaaaaa       960
     gaaggttagg caacaagcat aatctacatt tcttgcaaac ttattgcaat aaaattgcaa      1020
     ctttttaagc gccttcaaat gaacgtatag gcaacaagca aaaattgcaa tcaactcaca      1080
     atccattgca atgaaattgc aatccatgct acttggg                               1117
//
ID   DNA2-2_CQ   repbase;    DNA;    INV; 4736 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4736
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 69-69 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 22 sequences with >98%
CC   identity. 2-bp TSDs.
XX
SQ   Sequence 4736 BP; 1703 A; 627 C; 674 G; 1732 T; 0 other;
     cagggccgta gccaggattt ttgttcgggg ggggcttggg tgcaaaaatt caaggagtat        60
     aaaaatcagc aaatcattta taccatcact tggtttgtgg tataattatt gagatgaatt       120
     gtaaaatttt aatgtaatgt atgcaaaaaa gttttcgaag attttcatat taagttatca       180
     atgtatttat tgaagaaact cgttcgtcat tttttttctt tattttaaca gctagtttgt       240
     attaaaggag tagagaaagt gttttttttt aacattttct tgaattgttt aattgtaatc       300
     caatttcgtg ataaacgtcg ctaaatttaa aatatactta acttgaatca aatttttgaa       360
     agcataaatt ttttttaaaa gaaatatcga tttatctaac cataagtatt atgttttctg       420
     tattttatac tgagagaaat tttaaaccgt ctggatttac attttcagct gtgtgataat       480
     tgtgatggtt tatctaacat ttttcatttt ttctagcaca acataaaact cataactgga       540
     atatttgttt ttcttaaaat tttataaaca aacttaaaca atgttttatt ttaattgttc       600
     taagctattg aagccatttc atattttgcg aagctcctgg tgctctcaaa aataaataat       660
     tttaatgaaa tacaaaaaaa tataatcgtt gaaatttcag cttctgaagt gtctccatgg       720
     caacaaaaaa aaattacgtc gaatctcaag tttacatcaa ctgagtttac atgtgattca       780
     ttttttccgt gtcgagtaaa ttcacatttt ttttctgtgt aggcctataa taaatatata       840
     tttgaagaaa aaaaatcagt gcctgtgttt aattttaatg tgttaaaaaa tttagataaa       900
     atgtattaaa ttaattttta acgccaaaat attcactgga agagttgtta ataatgcata       960
     tgtaaccatt tttaaatgca tatgtaaccg ttaaaatttt cctcgattgc atcaaacatt      1020
     aaaacgaatc atgtttaact ttaatattcc gactaaacgc cattttcaaa ttcattactc      1080
     attgtattct gaaaattggt ccagaatttg agcaaaaata aaattttaaa acatgacaaa      1140
     aaaatttaat cagatctcaa ttctaaagat aattttttaa taaaatttta atctatatac      1200
     atgtttaata atttaggatt gtaaccattt attaaaatcg atgtttgttc aagcaatatc      1260
     ttgactctag gaacaaaatc ctgcacattt tatggtttag aaattttata tttacgaaac      1320
     gttgctaaat taaaaataaa gaaaacttta tgtaagaatt cataaattga ttagttttat      1380
     cctgtaaatc taatcttagt ctgcacttga attcaaacat accaatattc gaagcatcaa      1440
     aaaaataaga ttattaaaac ataatttatt gaaatgattg aaaattattt tttgaatatc      1500
     tttatttaaa aatgataaaa aatgtttttt ttttataatt taaggatttt tttagttgta      1560
     attattttat atttttttat gtatttgatt tttttcattt ttggaatttc tgattttttt      1620
     gaaattatca tgtgtaatta ttatcttaaa tttttgtttt aaaagtaaag aatactttat      1680
     gtaagaattc ttaaatcaat tacatttttc ctgtaaatca aatcttagtc tgaattttgc      1740
     tacaagaact atattttact ttcaaacgaa aattttaaaa aatgtcctgt agtacggaga      1800
     ctcttaaaac tccatacaaa aaaatctcaa ggaacggtca agaaaaggtt tacgaaaaga      1860
     cttctcttaa gcggtacgca gctgaaaagg aacagaaaca aaaagcgtcg tttgatattt      1920
     cttcgggagc aatatgtgtt gatgagattt tgatttgttt atttggatgc gactgaaaat      1980
     aacgtttgaa aataatgtat tcgcttaaat aatattgaag aattgcctca tgaagctgac      2040
     tatcaaaacg ctgaatctta aaatgctgaa ataagggaaa agccattaca aaaatcactt      2100
     aattttctgg taaatataaa ttaatttagg aatactagaa ttcaaacata aaaatattta      2160
     aagcatccaa aaattaagat tgaaaaaaca taatttattg gattttgaat aacttaattt      2220
     taaaatgata ttttttttag tttaggattt cttaagtatc aattatttta ttaatttttc      2280
     agttttagat tttttaattt ttggaatttc agattttttg atattattct gttgaattgt      2340
     tatcttaaat tttttatgtt tttattattt ttatttttga tttctggcat ttctttgtct      2400
     tataccaaaa aaatttaaat caaaaattat gaaaatttag aaatttgaaa gtgtaaaatt      2460
     tttaaatctt caattagccg ttgcgaatat tattctgaag tttatgtcac taaactctga      2520
     ccaaagttga gagggttaca aatcaaaact acaagctatg gttttattat tttaaaagtg      2580
     ttcaaaacac actttaaatc agtacagttg ttttgcatca ttagttttca aaatatctag      2640
     ctgatggcga aatccttttt tcgtgagaaa aaactttccg cggttccgcg acatgttaca      2700
     aaaattctaa atatttttaa acgagcccaa acatgtcgta tatgattatc aaagcaggaa      2760
     aaacatttca aatttgtttt ccggaccgac ctggtcgctg gtcctaaaaa gacttaatcg      2820
     aaataagtta tttccattaa aattgtgaag ctattttttt ttaaatattg tatttgctct      2880
     ctgttttttg gtccattttg aaaaggtggc aacataaact ttggaaaata tttacaattg      2940
     atattcagaa ataagaaatt ataaaaaaaa taataaagaa attttaaaat tttcaaaatg      3000
     caaattctaa tctgtaaaat ccaaaaaata gaaattaaat agtttaaaaa tgaattattg      3060
     atcagaaatt atataatttg aaagtgatgt ttaattaatt taatttcaga gtttttgaat      3120
     ccaagcttaa atttttttaa cgttttgaat atttttatca ttttatttct tcctttaaaa      3180
     atcgcaagct catgcacaaa gtgaaaatta gttgataata agtattcact tagttgatct      3240
     tccgattttt gatatattaa ataaaaattg gagattggcc acggtggaaa ctaaaaaatg      3300
     tgaccaaaag aaagcatttt ggacgagtgg tttcggaaaa aaggtttacg aaaaagtaat      3360
     aaaaaaatac acacagatat ttctcaagca tttttctcta aggtcttaga tatgtaacta      3420
     accatattct taaaaccaaa acgataaaat tagaattgta tttctgataa tagtcaaaat      3480
     tcactcaaat gtttttcata ttaaatgctt tcgtttttga aaacaaaatc taaatatttt      3540
     tgagaaatta tgataaattt tgaaaaatgt agagaaaaaa catgtattaa cagtttaaag      3600
     gttttaatgc aaataaagga gggctattaa ttttacaatc caaattcgac tagccgaagc      3660
     ctcgattatc caaagtttcg attatccgaa gttcgaagga cttcggataa ccgaatcagg      3720
     aacaaatgaa atcggcatgt tttatttgct tgtttttaac atcaaattcg gcatctgttt      3780
     ttttaatggt ccaatacacc aagtttttgc tttttgggtg ttttttaata cccctgacgg      3840
     tttcaaaagc acccaaaaag caaaaactgg aaatttggtt tattagacct ttaaaaaaaa      3900
     caccagaaat atttcttgac ctccattttg accgccacat tgaatccaaa aattctaaat      3960
     tattttatgg ttcttcaggg gtcatactta agttctacaa tcaaaaataa gacaacaaga      4020
     tctaaggatt tttgctgtcc ctattcagac tgtagtcccg attcgcccca gatgacggta      4080
     attatttcta tgtagcccct tagagcagtc cgctcggaaa ttgctatttt cgaaggttaa      4140
     taacttttta gcaaaaaacc caaaaaaata aggtgtcttc gggaaagttt ttccaaattt      4200
     aaagaagata ttagttctga aaattgataa gaactggata gttattgcgc cttccattgg      4260
     tcaaaaactg aaacagttgc ttttctccat acaatttgac gattttgccc aaacttggtg      4320
     gtcagtggtc agaaaaagct caaattttgg aacttaggct agtgatgcgt aaatctttga      4380
     tttcagggga tagccccaag taagcccaga tttggaccat cctaaccaat gtaatgctaa      4440
     aactacaaga taaatgagat gttactgaat ggaacaatgt tcaaatctgc agctcaattt      4500
     ttaaatatcc aaattttgga tccataatct acaaaaactg agcccggcaa tggacaggca      4560
     aattacttag tttgatcaat caattcttga ttctctatct tacaaattat ttctgggaag      4620
     agaacacaca atcattgatt taagattttt ttaaggtagt tcaattttaa aaaaattgga      4680
     aaaaatttcg ggggggggct gcagcccgga agcccccccc cctggctacg ggcctg          4736
//
ID   DNA2-3_AP   repbase;    DNA;    INV; 632 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-3_AP.
XX
NM   DNA2-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-632
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1736-1736 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   2 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 632 BP; 201 A; 86 C; 89 G; 256 T; 0 other;
     gagcataaaa cgattgagca tagacctttt tagcaacacg attgagcata gaatatttta        60
     tgcgatgttg ccaaattcac gttgccaaaa ttttgtaatt tattattttc acgtattatt       120
     acaccaatta ttatgatatc tgacgcgagc cgtgagccga gcccctcagc tttatcgaca       180
     atgttatcga ttaataaatt agttccggag tactattccg gactactatt gagactatta       240
     ttgacttata aatattttga ttttattatt ttcataagtc ataactatta ttattattat       300
     tattattatt tcattattag caaaaagatc tatatactgt attataatgt gactactatt       360
     gagactatta ttgatttata aatattttga ataatgtgac taggtatatt acatattgac       420
     tatgaaaaca tgatattttt ttgccatgtt atattttgaa tcattataat tatttaaata       480
     aatatttttg tataatacag ttcaaaattg aaaatggcaa cgttgcagag ttttttatgc       540
     tcaatcgtgt tggttttctt ttgtatttca atttcctttg atacgccgac aatttatgct       600
     caatcgtgtc gcaaaaaagg tgttttatgc tc                                     632
//
ID   DNA2-3_BTa  repbase;    DNA;    INV; 1537 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1537
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 895-895 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1537 BP; 451 A; 308 C; 303 G; 474 T; 1 other;
     cccaatcgga aatttgacct tggtacaagc ttagtatgac attttttcac atttgaatag        60
     agttgccaag cttatcttgc taatgttccc acaatgttag caggacattt attttacctc       120
     tgggacaagc ttgagcccaa agattgtgcc aaggttaggt ttgtaagact gctccaagcc       180
     tatcctgaca atattgccac aatattggtg ggacattatt ttacttccga gacaaacttg       240
     gatattcaat attgtgacaa tgttatgtta ataatattgc tccaagcttg ttcagcggwt       300
     attctgatca tgatgttgcc atagacttga tgttaaaata ttgccatagt attggcagga       360
     tatttatttt acctctgaga caagcttgga tttccaatct tccctctgag gcaaggtagg       420
     cgatagaacg ccgtattacc tgccgtcctc gcggaagaaa tttcttagcg tcgcaatgcc       480
     tataatgtag gcatacggaa cattggagtg ccgaggaacc ttcctaagtc agctacttcc       540
     ttggctgctt gcactggctg aagtattcaa cttggatccc acttgtaacg ggcactgccc       600
     aggcgaaacg agaaccagcc ccattgacgg ggcggccgcg cgcggaccgt tgccaaaaag       660
     ctccatttga gcccttggcc taagaatatc ggtaagatgg gttagacgcc tatggatcat       720
     gtgcctatta cgtcaaaaag cgaaaggtcg cagtttttgc cctttaattt gcccttaaag       780
     ggaccgcaac ggcagatccg cggcgagcgc gccctggtgg cggaaatagc aaacgcggtc       840
     gaattgtgct cgccgcgcac aatattgtgt taatcttatg acaatattag aaacagaagc       900
     ctaaaatgtt tattttctta atcttgtgac aatgttaaag tgcgaatatt accacaatgt       960
     tgtaaaaata atgttagcat aatatcaatt cagcagtttt agatatccaa tattgtgtca      1020
     atattatgac aatattacga acagaagcct gttatgtttg ttgttctaac gttaattgaa      1080
     tgttaacata ataacaatac cgcagtatca cagagataac atcgtctcga tattatttta      1140
     gcaattttgt tttcctaata ttgtgtcaat attgtgtcaa tattataagc agaagcctat      1200
     gttcagtatt ttttttaata atgcgccaat gttaaaacta acatattact gcaatattga      1260
     aaacataact ctacgacagt attagtttac caatattgta taaccaatat tgtgacaaca      1320
     ttgtgacaat cttggaatca ccgagcacca cctgacgttg gatttctaat gttgctaata      1380
     ttggtgcaat attaaaatac taaggttata tatccagtat tgatggcata ttgtaccaag      1440
     attctcaggc caaccttact gttgaaatat gctcacaatc tcgctaaggt tgccacaata      1500
     ttattccgat ctgcccaagg tcaaatttcc gattggg                               1537
//
ID   DNA2-3_CQ   repbase;    DNA;    INV; 447 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-447
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 70-70 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. 2-bp TSDs.
XX
SQ   Sequence 447 BP; 176 A; 61 C; 65 G; 145 T; 0 other;
     cccgggcaga cggtaataac aaaattcatg ccatttcaat aacaaattct gttaaaataa        60
     cagaaagtgt tatggaatct tcctgaaaaa tccatttttg cataagggtt taataacagt       120
     ttatgttatc ataacaaaat ttgttattgg tctgatattg gttgaaagcc aaaacaactt       180
     tggaataaca ttttttgtta tggaagaata actccaactg ttattgggat gatcggatta       240
     gttgttaaaa taacaaaaaa taataacaaa gatttgttcg aagaataact aaaaatgtta       300
     ttagtctgtt attacaataa caatccaata acaaaaaaat cataacgacg aataacaaat       360
     cttgttataa ataacgtaaa atgttattgg cctagtattt tcaaatatca aaaaatgtta       420
     ttcccaagtt atttccgtct gctcggg                                           447
//
ID   DNA2-3_TCa  repbase;    DNA;    INV; 1361 BP.
XX
AC   .
XX
DT   22-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA2-3_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1361
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 664-664 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is TA. Based on that, it is classified as putative
CC   non-autonomous Tc1/Mariner.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1361 BP; 479 A; 194 C; 199 G; 481 T; 8 other;
     cagggtggtc cagctcagct cccgtcttct gtagctcagt tattagtaaa gttggacttt        60
     tgatattttg tagacgttat ttatactagg acacgtttca ggaaaatatt tttgattata       120
     cagagtgtcc caaaaaagta tgacgtcata ataataattt tttaatggca tgctattatt       180
     tttttgtgct cattaggatg cctttttagc ttcttacatg tctctaattt tttttaaatc       240
     ggttcaggga ttactttaaa aaaaatcggt tttacacctt tagttttaaa aattaataaa       300
     aaatagaaac agtgcttttt tgatgacatt attastacgt acgtcttgaa caaggtctaa       360
     cagacttatt aattaagttt gattgatctg aattactaca gggtgtttac aatttatttt       420
     caaacttytt aaattttaga gccttttatt ttgcttattt cgaatggcaa ctcctgttta       480
     tttttacatc attcgatgca gaattaaaaa acaacatttt ttattattac aaccytaacg       540
     taaatcctaa cacattcgga gttatttgcc aaaaacytta accatatttg attaacawaa       600
     cgagttttta gcaaataact ccgaatgtgt taggatttgc aataaggttg taataacaaa       660
     aaattgtatt ttttwattct gcatcgattg atataataat aaacagagtt gaaactatct       720
     tcgactttta ttcaataaat ttgtcattaa aatacttgac aaaacaagtt tttagcaaat       780
     aactccgaat gtgttaggat ttacgttagg gttgtaataa gaaaaaaakg tcgttttcta       840
     attccgcatc gaatggtata aaaataaaca ggggttgcca tttgaaataa gcaaaataaa       900
     aggctctaaa gtttaaaaag tttggaaata aattgtaaac accctgtagt aattcagatc       960
     aatcaaactt aattaataag tctgttagac cttgttcaac acgtacctag taataatgtc      1020
     gtcaaaaaag cactgtttct attttttatt aatttttaaa actaaaggtg tataaccgat      1080
     ttttttggtt tttatttttt taacagtaat ccctgaaccg atttgaaaaa aaattaggga      1140
     catgtaagaa gctaaaaagg atcctaatga gcacaaaaaa taatagcatg ccattaaaaa      1200
     aatattatta tgacgtcata cttttttggg acactctgta taatcaaaaa tattttcctg      1260
     aaatacgtcc tagagtataa ataacgtcta caaaatatca aaagtccaac tttamtaata      1320
     actgagctac agaagacggg agcttgagct ggaccaccct g                          1361
//
ID   DNA2-4B_LMi repbase;    DNA;    INV; 1481 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 19.11, Created)
DT   23-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-4B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1481
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2963-2963 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1481 BP; 453 A; 287 C; 250 G; 491 T; 0 other;
     tgaatcggtc ggtggagaaa ggaactatgt cactttttca tacttttcag gaaagacaaa        60
     aaactgtttt attgttaaac tatttaacgg attgcattga aattttcgac atttgctgta       120
     ctctaaccat acatactgtg aatgaaaata atttttatat attctaaaaa gtatcttctg       180
     aaaaaaaaat aaaatttgta acatagttcc tttctccagt caacgaagga attagtactt       240
     ttcgtgacta taatacattc aaagatacac atttctcgat taaaactcaa atttattgat       300
     aaattatctt caactgaaca tgaaaacaac tatttactag aattcaaaga tcggaatagt       360
     tcatatcaca gtgagttatc acttaatcgg ccatttcaaa atctcctcat aaaaaatctc       420
     agcgtgttct ccatggatgt atttcatcag tttccaaaaa tatcttcaat tttctttata       480
     ttgattcata ctttcttccc atcatgtagg ccctagtctt ttcaatccag tttcaaatga       540
     aacaagttca gttattgcca gattaaaggt gtgaccaaca cagctgttta tgaaataaat       600
     ataatgtttc ttgcactggg atgtttggca ggggcaagtt ttgcataaag tcgaaagcta       660
     gtccaacaat gtcatccctg cccatacatt ctagctcagt tattgtaatg gatttataaa       720
     actacctgct gcgtcgcttg tgaatatcca actcaagttg tgcacctcgt ttactactgt       780
     cagagatatg tggactttta acttagcctg aagttcttca catttgacac atacatcaat       840
     ttgcggacgt ccgaaatgaa aattgtaatt ttcatgaaaa tgtttcctgt ggaagtcgta       900
     tttcacattt acgtctggat attacttaag gaacatttcg tgcatatttt tcaggtccaa       960
     gcgtgcatct aggtatttca tcagcatagt gagtttcttt gagtgggaaa gatgtgggta      1020
     tctatcaaat ttattacatt ttccgcaatt ttggttatgc atggatttct tccacgcatg      1080
     tccttttgac atttagaaag acggtattca atcacttaca acactcaaca ataaccgtga      1140
     cacctgacga agttggcgcc aagttactgt tttgttgcgc tttttacacc tgcattctgc      1200
     agaccaacgc catctagcat gtagttggtg cagtacaagc tcgctgacag taaaatctgc      1260
     tggtgggacg caacgtgcgg cggagaaagg aactaagtca ctgacttgat tcctttctcc      1320
     tcagcatgta taaaatcgac ctcatgttat tcccacagga agaagccaaa catagttcct      1380
     ttcatcacag taaggtgtgt cttggtctgt ttactacatt tatgtaaaaa agtgaaaatc      1440
     gccaaaaagt gacttagttc ctttctccac cgaccgattc a                          1481
//
ID   DNA2-4_LMi  repbase;    DNA;    INV; 1127 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 19.11, Created)
DT   23-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1127
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2964-2964 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1127 BP; 350 A; 210 C; 186 G; 381 T; 0 other;
     tgaatcggtc ggtggagaaa ggaactatgt cacttttttg tacttttcag gagagacaaa        60
     aaactgtttt attgttaaac tatttaacag attgcattga aattttcgac atttgctgta       120
     ctctaaccat acatactgtg aatgaaaata atttttatat attctacaaa gtatcttctg       180
     aaaaaaaaat tgaaatttgt aacatagttc ctttctccag tcaacgaagg aattagtact       240
     tttcgagagt ataatacatt caaagataca catttctgga ttaaagctca aatttattgg       300
     taaattatct tcagctgaac atgaaaacaa ctatttaata gaattcaaag atcggaatag       360
     ttcatatcac agtgagttat cacttgaagt tagccatttc aaaatctctt cataaaaaat       420
     ctcagtgtct tctccatgaa tgtgtttcat cagtttccga aaatatcttc aatttttttt       480
     atattgattc gcactttgta attttcatga aaatgtttcc tatagaagtc gtatttcaca       540
     tttacgtctg gatatttctt aaggaacatt tcgtgcaaag ttttcagatc caagcttgca       600
     tctaggtatt tcatttcctt cccagcatag tgagtttctt tgagtgggaa agatgtgata       660
     ctgggtacta tcaaatttat tacattttcc ggaatttttg ttatgcatgg atttcttcca       720
     cacatgtcct tttgacattt agaaagacgg tattcaatca cttacaacac tcaacaataa       780
     tcgtgacacc tgacgaagtt ggcgccaaat tactgttttg ttgcgctttc tacacctgca       840
     tgccgcagac caacgccatc tagcatgtag ctggtgtagt acaagctcgc tgacagtaaa       900
     atctgctgat gggatgcgac gtgcggcgga gaaaggaact aagtcactga cttgattcct       960
     ttctcctcag cacgtataaa atcgacctca tgttattccc acaggaagaa gccaaacata      1020
     gttcctttca tcacagtaag gtgtatcttg gtctgtttac tacatttatg taaaaaagtg      1080
     aaaatcacca aaaagtgact tagttccttt ctccaccgac cgattca                    1127
//
ID   DNA2-4_TCa  repbase;    DNA;    INV; 1439 BP.
XX
AC   .
XX
DT   22-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-4_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1439
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 665-665 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is TA, often in multiple copies. Unclassified (possible
CC   non-autonomous Tc1/Mariner).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1439 BP; 486 A; 246 C; 246 G; 460 T; 1 other;
     ctcagtgtca taaaaattgc aacaccaaga aggaatagga attttttgat gaaacttggc        60
     acaaatgtta gactattagc aggtattaaa tgattaaaat ttgaacgttt ttaatcaagt       120
     ggtaaaggag tttttaacac ttaaactctt ttaccagcaa gtgttgttct tccaattttt       180
     tgcgtttctg acaatttttg aaggtgtttt tttaaattcg tttagtttta agtgttatga       240
     aaacgaaaat atgcctagag tacgacaaaa aagaaattac caacaattaa acaaacttta       300
     aagaagcaca atttttggga aacgaatagg tgttttttta tttagagaaa tygctatttg       360
     tttgaagagt aatccaagta ccattatgcg atgttatcag tcattgatta gagaaggttc       420
     aggacaaagc agaagaggaa gcagacttaa aaaaaacaaa tgaagtccaa aatggtcatc       480
     ttcggattat ggcaataatt caagtacaag aaaaatttct gaccaatggt tgagttcgaa       540
     ggtcgtcgta cttcacttct gactgtttac catcgaatta ggtcatttgg actgcttttt       600
     gttggatttc ctaggtatgg gaggaatgag caaaaacaca gcttaaacct gacacaccaa       660
     aacttttatt tggaaagaca acgtgtttca accacaaagt ggtcatcctc aggtgagaat       720
     atacactgta tacattgacc acattatggt cgaaacgcgt tgtgtttcga aataaaggtt       780
     tgatgggtca ggcttagata tgcgtttttg cccattcctc ccataccaag taaatccaac       840
     aggaaacagt ccaaatgacc aatttcgatg gtaaacagtc cgaagtgata aaaaacgacc       900
     tttaaaccca cccattgggc aaaaatttgt cttgtaatta aattatagcc atactccgaa       960
     gacgaccatt ttggacttca tttgtttttt ttaaggtatg ctttctcttt cgcgctgtcc      1020
     tgggccttct ccagtctatg actgataaca ttgcttaatg atacttcgat ttctatccaa      1080
     acgactagca atttctctaa ttgaaaaacc cctatttgta gtccaaaaat catgcctctt      1140
     tcaaaactgc ttaaattgtt agtaattttg gttttgtcgt ctccaggcct aattgcgctt      1200
     ttagaacact taaacctaaa cgaattaaaa aaacacataa aaagatagtc agaaaagcaa      1260
     aaaattggaa gaataacact tgctggtaaa agaacttaaa tgttaaaaac tcccttacca      1320
     cttgattaaa atcgttcaaa ttttaatcat ttattactcg ctaatagtcg accatttgtg      1380
     ccaagtttcg tcaaaaaatt ctaattcctt cttggtgttg caatttttat gacattgag       1439
//
ID   DNA2-5_AP   repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-5_AP.
XX
NM   DNA2-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-218
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1940-1940 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   2 bp TSD. Putative Mariner element.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 218 BP; 44 A; 66 C; 65 G; 43 T; 0 other;
     cggcccacga gagagtatca ccgtcgcccg acgaaaactc gtccgattcc gcgcattccc        60
     cactactcgg cattgccgat agctgttcgg caacggtcgg ctgcgctcaa cgctatacgg       120
     tgtatagcgg tcgtggaaat agtgggggaa atggggcctc ggaacggtct ccgccgtcag       180
     tctgcatgcg caaaacggta atactctctc gtgggccg                               218
//
ID   DNA2-5_BTa  repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-349
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 896-896 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 2-bp long (TA).
XX
SQ   Sequence 349 BP; 100 A; 66 C; 77 G; 106 T; 0 other;
     gaggtgtcgt cagctaagtt gacggttgtt tactttcggt ttgcaagcgc caacgacgaa        60
     tttgggcctc tgaacaaagc ggcgttcgct actatccaca ttgaaaacat cagtctcatg       120
     atcgtatcgt aaaaaaacta cttatcagtt atgatttgcg acttttttgt ggttgtgatt       180
     tctgtgtggc taaaaattaa agtgttacaa ggtttgaaag tattaaaaaa cttatctaag       240
     cttgtgttct tgcttctgag agagccagat gttttcatgt ggatagtagt gacgcgaaaa       300
     cgcctgcaaa ccgaaagtaa acaaccgtca acttagctga cgacacctc                   349
//
ID   DNA2-5_LMi  repbase;    DNA;    INV; 1098 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 19.11, Created)
DT   01-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1098
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2887-2887 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 2-bp long.
XX
SQ   Sequence 1098 BP; 375 A; 187 C; 198 G; 338 T; 0 other;
     tgagtagcct aatatcaaac ctggacatct gacctaatgg tcgaaattta gttagcagtc        60
     gatcctaaag gaagtttttc cgctcttttc attggtgaag tccgtttttt tccaaaaatt       120
     gacgtaaatg tgataaatca cacgttaaat ttgactgttc acatcaaaag cggacaccta       180
     cataagagct tgatatcaaa ttcggacact tgttgaatga agcagtgtgc accaatggga       240
     acacagtata tgatcacatg acctcgaaaa tcagacatgg cgacagtatg tgccaggtac       300
     taagacgtat tagcccgtac ttaagttttt cagtaatttt ttatagtatt attactaata       360
     accatcttaa agcgagtgaa atggaacata atatatcacc agcgtccgaa ggaaaagcta       420
     ggaagcggtt gagacaacct gaaaagtgga aaataaacat tgaaaagaaa caaaggtaag       480
     actagcttgt aaactacact gttctattgt aaggtgtgtt gtacgaaatt atcacttgtt       540
     ggaaagaagt tcgatgtcag aaataacgta aggatgttta cggaaaaatc tggcgacagt       600
     ttcaacagac cttatgctaa taattttaga gattcagtgc cgtaacattt cattttgtat       660
     ataaaattaa aaagattatt atgattattg tagttcttca tttttccaat atgtaataga       720
     gttcagaatt taatattttc cactttatgt cgatattcct ataatttccc agattataca       780
     cctgtaaaag attctcgtca gcagtaagcg aatctctgtg tatcaaaaac ggacatctga       840
     aagcgtgttc acatcaaaag cggacaccta cacgttttgg tttcaaagac ggacatctgt       900
     attttcaaac acaatttgaa ggtgcttgag taatcaaatt gatattagcc acttccaggt       960
     ataaatcctc gagtattaaa gttgataatg ctcaaatcag cttataaata tattagctct      1020
     acgtttcgca ataaaaaatg acgtttatct cagtttctgg caaacgacag atgtccgtct      1080
     ttgataatag gctactca                                                    1098
//
ID   DNA2-5_TCa  repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   22-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA2-5_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-411
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 666-666 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is TA. Based on that, it is classified as putative
CC   non-autonomous Tc1/Mariner.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 411 BP; 167 A; 56 C; 64 G; 124 T; 0 other;
     cagggtgtat cagaaatacg tgtcttaatt ttaacaggta acagagctca acaaataaaa        60
     catcttttct atttgtaatt tttcaataaa aaattcgcaa atttacttaa aatttggaaa       120
     aagataacat actgaaacgt gtacccgcct atgggtacaa aaataagaga gccgaactat       180
     tttcgttgtg atagaaacgg acaatttaaa caatttaaaa caacaatgaa aattgttgct       240
     atgaatacaa actaattatt aaacactgac cggctcgttt gcacaaaaga aaggaggaaa       300
     acagtgaaaa ttataaataa gaattttgca aaatgttata tagaaaagtt gttgtatttg       360
     atgagtttta ttacgtgtta aaattaacac acgtatttct gatacaccct g                411
//
ID   DNA2-6_BTa  repbase;    DNA;    INV; 2237 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2237
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 897-897 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 2237 BP; 694 A; 425 C; 400 G; 718 T; 0 other;
     ccctgctaaa aatgagtgta atgctagcat tacactcgtg agtgtatagc tagcataatg        60
     tgatttgcac acagaattgc attatgctag cattacacta gttatacact ctcgagtata       120
     tagctagcat tatactagct atacactcac gagtatatag ttagcattat actagctata       180
     cactcacgag tgtaatgcta gcattacact ggcattatac tgattctaca ctcaggagta       240
     ttatcttgac acttcactaa ttatgtgcgc attagaatta tgctagctag cacatcccta       300
     aataacaatg cgctgccgtc cttaaaagga cggccccgcg ggggtggcgc tgggccgagg       360
     cgagagggcg gggacgcctt gcgcccttat tccacggtga ggctttcgcg gtgttcattc       420
     ttgttaacgg taccattgca accatcgggg agtcagattt ctcgggtatg cccaagtata       480
     ttgatatgag gctgtgaaaa agagagcgca acttttaacc gcttctataa cttatcaaat       540
     ataaatatta aaagaaaagt gaaatctcta gaagtaaatc ataaacacct taacaagtga       600
     gaagaataac gagacaaaaa ccattcatcc gaggcaggct tgggcccaga gaaaacggga       660
     atcgcacatt gaagagtacg gcgccatctg gtggccgtga ctggtaaaca ctcatcacac       720
     agttatacac tcattagtgt aatgctagca ttacactggc actgaaccag ttatacactc       780
     agcagtataa agctgaaaaa attcttgttt ccgtatcgat gtcatttgat gtcaattgta       840
     tgctcatgaa ataatgcaat gatcgttcgt gcattacaga gtgctattat aatttagata       900
     aggattaaag tttagtccta tattgagaga aatttcgtgt tttattgcca tgtgtatatg       960
     cacgctgatg ttttctaaat acatggaatt ttaaattgta aatttttttg ttcacaatgc      1020
     cttttttcca atgagaaaat aaaacaataa aacacttctt tacttcatat ttctgctaac      1080
     aattatattt aaaggaaaat ggtagagtgt tggtcttact gacagtttct ttaatttgag      1140
     gattacctac attcttgcga agaagtcatt tttcttaaca tccttgtaca atgagccttt      1200
     gcttttttag ttttatttta tgcccatttt tttaatgcct cagcattctc cttagcagta      1260
     acagaaaaat aaaaaaagta attttagtga aagcactcat ttttcctgaa atttcaggat      1320
     gaacttaaat ttacaggtgt cattgcagga tttgaaaaat acctacataa ttgacttcct      1380
     caagaaatct aatcagtgtc attatcattg actttctcaa taattctggg aaattattat      1440
     taattttcca ttttcctgta cctatatatt tcatttcctt tcgtagtttg gaaaatcgct      1500
     tttggcaacc gataagatat acttagtccc tatggatgag cttactctat ttgcattaac      1560
     ccacgagggg ttcgcgaagc ggaccttaga gggcgtgaag cgtcgttggg ggtttgggtc      1620
     gcgttgcggt cagggggcgc accccctatg ttattaatat gaacctataa tttaatgtca      1680
     atacataact cattgtacaa cactacccca tacataaccc ctaagtagta taacactctg      1740
     gcatagaata ataaatagct tcgctagctt cgtcagctag ttattattct atgactctgg      1800
     attgtaatac ctacccgatc aacttaatgc tgacatataa ctcgtatatg cttagcatta      1860
     cacttttgag tgtaatactc gtttattgcc gactaagtta atgctaaaat ataactcgta      1920
     tatggtaagc attacactgc tgagtataat actagtataa tgctgaccag cttaatgcta      1980
     acatataact cgtatatggt tagcattaca ctgctgagtg taatactagt ataatgctga      2040
     ccaacttaat gctaacatat aacacacata tggctaggat ataatcattt agtgtatcac      2100
     taacgaactt aattctcaca tatagctggt atagtaccga catattgcta acattacgtt      2160
     actcagtatt atgcttgaaa acttaatact agcacattgc tatcaatatg ctaacattac      2220
     actcattttt agcaggg                                                     2237
//
ID   DNA2-6_LMi  repbase;    DNA;    INV; 1609 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1609
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2965-2965 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are (TA) 2-bp  long.
XX
SQ   Sequence 1609 BP; 437 A; 352 C; 309 G; 511 T; 0 other;
     gagtgcacgc aggataaatt ggccggtaga tgcgcagacg gctgggcaag cgtggggaga        60
     gcggtagtgg tgggggtagc ggccggagca gtgaggggaa gtgaccagcg ctggagggga       120
     agtgccgctc taaactgaag cctacgctcc actacctgcc ggagttttat aaattctctc       180
     ttctgtacct aaccatacca tcaaaaatac ctttttctaa atacttaact caatgttatt       240
     aatatttcat tatttttatc attttattaa cattacctat cttacttcga aatacatgtt       300
     acttaaagcg ttagttatgt aacatttgcg atacaggata tggactgatt tgttagtatt       360
     actggtgtgc atgcaggaag tatggtgttt ctgtttaact tgcaaataga aaaaattttt       420
     cattagtctt caatttactg cagtcatctg gatagagctt aaacaatcag tcagaaacaa       480
     tactaaatca aacacccaca atacgaaaca cgttaataaa accgatggta tttctgtcgc       540
     tgcattatag aacgtgttta aatttaaaag gaatgctcac tttctcctgt tctacagtat       600
     tgtagaccag aaaacgtaaa tgtttccttt agcctttaga cacattaata ccttatagtc       660
     tgcagaacta cttgtcctta tcagttatct gcgtgtacta taatcagacg ttgtcctttt       720
     gaaagtggcg cctttactcc attacttgat ccatctgtcc actcattggg cgtagtatgc       780
     gaactgcgaa tgtatgtttc atcgacatat atgagaggtc aaccctcttc acggtactat       840
     tttattttat ttaaataatc gacacgttta ctgcgtattt ctaaacgttc caaagcacct       900
     tcctgtaacc tgttttttgc gccacctggt aaatattaag cgtgttaatt gcacgaaaaa       960
     taaagcatgt aagtattaca ttgaaattaa aaaactaatg tacctgaagc ctaacttttg      1020
     aagtaggtac cgcaatgaag aaatacttcc cttgaaagac gtattttccc ttattacggg      1080
     aaaaagttac tttattgtgg ggcgctgttt gtttgtcacg tggaaattgt ttatcaatct      1140
     ccgcacaact tgttcatgaa aatcatctaa atctaagact ttttctcttt attccgcttt      1200
     ttcctggagt agagaaacct tcagaactac cggcaactaa tttctctctc tctctctctc      1260
     cttttttatt tttttttatt gtccgaagtg aaacaccagt agcagcctgc actctttcaa      1320
     ggacactttt aatgggattt ttatcccctc ttttgcctct tccgacataa atttaattac      1380
     actgaaaaca atctctcgtg cctggctatg cagaactctt cctgcaccta tagcgcttgg      1440
     agactgtgct gccacgccgt ttatagcggt gcgctcactc gatgtgcact ggccggcagg      1500
     cggaagtgga ctgacgcggc ctccccttcc gaacgaagga atgaactcgc ccggcgcttc      1560
     ggacgaaaac tcgtctctgc gcatcgtcca ccgtatcctg cgcggactc                  1609
//
ID   DNA2-6_TCa  repbase;    DNA;    INV; 609 BP.
XX
AC   .
XX
DT   22-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA2-6_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-609
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 667-667 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is TA. Based on that, it is tentaively classified as putative
CC   non-autonomous Tc1/Mariner.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 609 BP; 214 A; 114 C; 93 G; 187 T; 1 other;
     cagggtgttt acggtcttgg ggttgaaact taaaggagat gatatgagtg ataraagaac        60
     cccaaaacgc tatataaaat aaaaattcac attataacag aaaatcatta aatttacatt       120
     atttgtttgt gaactgctgc ttcgactaca acaattacta ttaccttgtg cttcgccgta       180
     agtcctaatc atgacaacca attcattatt tcaataattg tagtccaggg acgtaaattt       240
     gatgaaaaac ctccacaaaa cacaaaccaa acttgctcga aacgatttcg gttgaagtga       300
     tcaaacagag gaccagcgga tttaaatttt gatcaaaact aaagtaaagc caaatgaaat       360
     gatgacagtg tcaaaactat gaagtgacgt ttttcactgt cgtggttaca atattcttat       420
     ttgttgcaac aattaaattt tattttaaca gagaaattat tccagtgacc ctcaaaccct       480
     gtaccaatac ttcggagtta aataacattc ttaaaaataa caattccctg agtttttttc       540
     gcagttacct tatttctaca ctcttttagt accaggtaaa gtttcgactc ctagaccgta       600
     aacaccctg                                                               609
//
ID   DNA2-7_BTa  repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-157
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 898-898 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 2-bp (TA) long.
XX
SQ   Sequence 157 BP; 40 A; 34 C; 40 G; 43 T; 0 other;
     gagctcgcgc atcgtatgtt gagacaaatg tcaaaggatt gtttatgtca ccattcacca        60
     gtggtgccac ctgactacat gtattaacct gttgagcggt gcgaattcgg agctaatcgg       120
     agattgacgt ttgtctcaac atacgatgag cgagctc                                157
//
ID   DNA2-8_AP   repbase;    DNA;    INV; 765 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-8_AP.
XX
NM   DNA2-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-765
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1941-1941 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   2 bp TSD. Putative mariner.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 765 BP; 290 A; 120 C; 90 G; 259 T; 6 other;
     cagtagaaac cgtttataat gacgttcaag ggaccaagga aaataggtcg taataaccga        60
     tngtcattac naccaaaatg actaaaatta aattataact tcaatanata ttattattat       120
     tatttattta cgtaatgtat aatatagaaa aaaagtaaag ataaaaacat ttaattatgt       180
     acatattatt taaattaatt aattcaatta ttatttttaa aaaaatctgt tatttcattt       240
     tgaaactctt gttcgatttt gtctcaagct ttccatatgt tagaaatcgt atagagtgac       300
     ctaccccaaa ttcattaggt atgtgggaat ttttttcacc ttttttttta aacgaaacat       360
     gacatttgct ttttcttcaa ttgtggattg ctttcgtttg cacattttac aatttcaaaa       420
     tatttaacac aagaacacaa aacacattta atctcacgac gattacccgt accctgatga       480
     taaaataaaa taaaataaaa ctgacgacaa aacaaagacg aaattgtcgg tattatcggt       540
     tgtaatagta ccttcaataa agtaaagtca ttatagataa aatatttttc caatataacc       600
     aaaaataacc gtcataacat ccgtatagtc attatataga cgtcataacn accgatacaa       660
     attagtacat acaacttacc tangcgtttt tcagggncct ttaatttaag gtcataaaac       720
     ccgatatgtc actacaaccg gtgtcattat aaacgatttc tactg                       765
//
ID   DNA2-8_BTa  repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-146
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 899-899 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 2-bp (TA) long.
XX
SQ   Sequence 146 BP; 41 A; 26 C; 32 G; 47 T; 0 other;
     gaactgggga aagaaaagaa gagacaaaag tcacatcagt ctggatgcat caatcatcag        60
     ttggcccatt ggttagcatg taaatatctg ttgaatggtg caatttttgg atgtgacatt       120
     tgtctcttct tttctttccc cagttc                                            146
//
ID   DNA2-9_BTa  repbase;    DNA;    INV; 336 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA2-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-336
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 900-900 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 336 BP; 92 A; 77 C; 72 G; 95 T; 0 other;
     cacggagaaa aaaacttcgt gcgtgggacc cgaagtttag gtcatatgga tctctgaagt        60
     tttcggattg agcatctgaa cactttaggt ccagctgctg aggtttggat cacacatctg       120
     aaacttcagt tcttacatct gaagtacttc ggttctcaca tccgaaaaac ttcggttctc       180
     acatctgaag tacttcagat gtaagaactg aagtttcaga tgtgtgatcc gaacctcgac       240
     agctagacct aaagtgttca gatgctcaat ccgaaaactt cagagatcca tatgacctaa       300
     acttcgggtc ccacgcacga ggtttttttc tccgtg                                 336
//
ID   DNA3-10_AP  repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-10_AP.
XX
NM   DNA3-10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-341
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1951-1951 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 341 BP; 104 A; 66 C; 71 G; 100 T; 0 other;
     aaggtgggtt tccactagat acgtgtacgt gtacgtgcat aaaaatactt tactgtgatt        60
     ggttggtata cacggtaagc ttttggtata ccagggtgtt atacgttctt accacaggct       120
     tgaccatgat accatgaagt tggatccagt tcaacttttc acgtgtacac ggctctatat       180
     tgataacaat attgataaca taagaatata cgaggtaact aatatgttac caatccataa       240
     ccgatctaac cgatgggaaa cgtttgtgag accgttcata gcgaacgtat ccggtcaata       300
     tatgcacgta aacgtacacg tatgtagtgg aaacccacct t                           341
//
ID   DNA3-10_BTa repbase;    DNA;    INV; 694 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   30-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-694
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 919-919 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 694 BP; 140 A; 193 C; 195 G; 166 T; 0 other;
     agccgggttt tcctccaact ggcgcagcgc acggcgatcg cgtcaaaaac gcggttcctg        60
     gcgcgaatgg cgcggctctg ttctcctcgg aatctgtcag gcgtcgtgcg ctgagtacag       120
     cgtcggcgtt ttcacactgt ttttcgtgtt tttcgatatc agtgtggcgt ctatcgctag       180
     tgtgctcgca catgcgttcc gctgtgtttt tatattcgga gcatttaggg ttgaaaagca       240
     acgggtgctt cccaatttca ttcagtagaa cctcgtcctc cactggcgtg aacgtttcag       300
     ttgaagtcat gatgcaagtg cacaatcaat taaaataaaa atcaacgtct gctcttcagc       360
     aaaaacaata gaacactgga atgtgatcat ctgtgattcg cacttggcgt ccagacagga       420
     catccaacga ggtttccaga caggacatcc aacgaggttt catcccgtcg ggccgcggcg       480
     ccttgcgccg cgctagagga cgcagcaccg gtcccggacc ggtgctgcgt ctttgggcgc       540
     aagcgttggc tcggtgacgc ttggcgctca tcgcgcgctg tcatttcgga gggaaccggg       600
     agcatttgat ttcatgccta gcagtgcagc gccgcgccca aaaacgccgt cgccgttgcg       660
     cgcgccaccg cgctagttgg aggaaaaccc ggct                                   694
//
ID   DNA3-10_LMi repbase;    DNA;    INV; 1289 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1289
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2892-2892 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1289 BP; 444 A; 242 C; 220 G; 383 T; 0 other;
     ggccggtatt acactgtaaa agatctttga caaagatctt tgtcaaagat tttatccaag        60
     atctttgacg aaactacttc acaggagcac attacactag cgtaaaatat ttcgtcatag       120
     ttgctcggaa taagactcca aaatagtcaa tcgtctgtat tatagtacgt aatataatgt       180
     tgctcgggag tgcattcatt ggaaagaacg aaaaatggaa acaattttag gtaaaaccgt       240
     gaatagcgag aggaaaatac gaaaactgct cgcacaaatg tacttcacga gctacactgc       300
     tgggaaataa taacctaaat tgtttaagaa cgtgtgagca aacattttaa ttcgcccaca       360
     tatttataaa tacttcatca taatcgatgt ttcaggaagc cctaaagctg tgtcaatggg       420
     taaataatga aacactgaaa taatttaacg tgtgtcatgc taaacataac ttcgttagac       480
     actttatcat aattaagaag agagaatatt ttcgtagttc tttcatgtta tgcttcattg       540
     cggattatgc gctgcgaaag acatttttat agtttactgc agtctgacat ttgttttgcc       600
     tgattttccg aaacataaaa tatccgtata aatacctgga cttgtggtta aatgtcgaaa       660
     agcatcgtgc aaagcaagaa aaaatatgga gctaactagt gcagtacctc attacgcaaa       720
     tcatgaatgc cttttccgct gaagatcgtc ccatttatat ccacatacaa aatctattcc       780
     agcaggcagt aaaatacacg aatcctacag tgtaggccta agatttcacg tattattcca       840
     gacataagtg aaccaagatg taaatcactt taggaggaat tacgaggtta ggttagagta       900
     caaataaaaa catttatttc acttatgcat ctccatatat cctttgatcc atataatttc       960
     ttccctatca tcatccacag tgagccactt tgaatacaac tgacagcagt agctttttct      1020
     ttatacgatt ctaaccgtat attttagtaa atgtgctttg tattaagaaa tattccgtac      1080
     acttcacact ttgaaacgat cactgtggca gtagcgacgc aacaaataca ctttgacgcc      1140
     aaagcaagga aagacgcatg tatacaatgg cgaactttta taaaagctag gctctcttat      1200
     aaaagatgac ccatacaccg tcaaagattt gaccaaaggg ctttgataaa agatctttgt      1260
     caaagatctt ttacagtgta atacccgcc                                        1289
//
ID   DNA3-11_BTa repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-11_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-290
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 920-920 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are likely 3-bp (CWG) long.
XX
SQ   Sequence 290 BP; 78 A; 71 C; 64 G; 77 T; 0 other;
     cagcctgatt gttgaaattt tttgtttgtc gggacgacat agatgacata ggttaaaagg        60
     cggagcgtga ttggtcggct atgtcttatc gctgctttgt cgtgcctatg tcgggttgaa       120
     ctcacgacaa gctaacggca cctcttaagt ttccgacagt atgtcgtcca ttccacctga       180
     caaaggcacg acaaagcagc gataagacat agccgaccaa tcacgctccg ccttttaacc       240
     tatgtcatct atgtcgtccc gacaaacaaa aaatttcaac aatcaggctg                  290
//
ID   DNA3-11_LMi repbase;    DNA;    INV; 1448 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1448
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2893-2893 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1448 BP; 440 A; 280 C; 262 G; 466 T; 0 other;
     gggccgtatg aataagaaag agcacatgct ccagagaaga ttctcagagc aaaagaacgt        60
     tctctgagta agttctcaat ttcgtatgaa taaaaacttc gaagcatatg ctctgagcag       120
     gaagttcatt ctcgctacct cccctccttc tgagtaagtt ctccgtgtgt catgtccggc       180
     acagaacagc tgttcaatcg tgtatttctt taaactagcc caatcaggca aattattcag       240
     tgtacaaata tggagtaggc atctacgtgt tcaggaagaa ctgtactatg tttagatatt       300
     agtttgttgt gcagcagcat attattaaga ctaaatatgc actttttacg aaaatgtatt       360
     cttctgacga tgttacaaaa ttttcgtcat gcgagaaact tttttgttat tgaagttggg       420
     ttagcacaat ttgcgaacga aattttaaga atgcatcaca ttttcatctg tttcaacgtg       480
     gaacgctgtc agagctttct aacacgagat actttttgtt aaatatgaca cccaatggtc       540
     tgctcataag cgataggcca tgcgattttg ttacaagaaa caggctgcta ggtatgtaat       600
     taatcagtta ttaattttcc tgtcgtgtct acttacttct aacataacag aagttacgat       660
     tacgaagtca gaaaacgcat cttaaatagg ccaaccggtt tgggtagaat gaacaagagc       720
     agtacaaaca atacttcagt acctggtatt gcagcaatat ttattttgtg atacagactg       780
     tgaagtcctg ggatgcactt tatttggaat taacgtcata aggccttatt aatagaccct       840
     atttaaaaac acaatattat tttgctatgt agctgtttac aactgtaaat atgcactcca       900
     aacaaacggg taaaacacgc agctgaatcc acttgtgttt catttctatg tcggtaatga       960
     aaaaactcct ctgacatcac tctcgtcact atataaaatg cttgaagtgt cacacttatg      1020
     atttttgtga aggaagcgac tcgtcagcaa aatgttttta tttgcataaa ctttttagtt      1080
     cctctcgtat ttcttcagac tacgtataaa ggaacttttt ttgccttcta agcaacacaa      1140
     attttgtcat ttttattata aaccacagta aaacgtaacc ttaatagaag ttactcagct      1200
     cgaagtatgc tagagagctc acttcagaaa acggagaatg ttctccggtc gtgagaaact      1260
     tctctagttt tattcatacg aaatcggaga atgttctctg ttgtgagcaa cttcccccac      1320
     ccttttactc acgctgagaa catactcggt tgaagtatat tctccgactc gctttattca      1380
     tgcgaacctg agtatgttct ctggaattca gagtataaag tagatactcc gttttattca      1440
     tacggccc                                                               1448
//
ID   DNA3-12_BTa repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   05-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-12_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-286
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 921-921 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 286 BP; 73 A; 67 C; 53 G; 93 T; 0 other;
     tgtgctggtt acacgctcaa atttccatca atttccgatc aaatggtgac tggtgcgcac        60
     catctaccat caaatttctg cggcctgcaa aaatttgatg gtagatgatg gagctgtggg       120
     gctcatcctt catctgattt ccacacaacc gtgcttattt catgcttatt tcaatcaaca       180
     cgctgtttta attaatttta ctcatcaatc tagataactc tcgaccgcca tcttggtcat       240
     cattttgatc ggaatttgac ggaaatttga gcgtgtaacc aggcca                      286
//
ID   DNA3-1_AAe  repbase;    DNA;    INV; 3176 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3176
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1278-1278 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 3-bp TSDs; usually TWA. TIRs are 71
CC   bp long.
XX
SQ   Sequence 3176 BP; 987 A; 531 C; 583 G; 1075 T; 0 other;
     gggtctgtct caattgcgtt gttaaaacga gtccgaactt aaatttgaca gttcgggaat        60
     tatttcccct ctgatttcga tctgtcaaaa ataagtctgc tccagaggag acttattttt       120
     gacagatcga gaattatttc tctagttcgt gtttcttgtt atggatgtcg tccacgtttt       180
     tcgtcccgct tcgattaccg atgtggccat cggtccgacc tcccagctgc accaaggaac       240
     tattgtaagt tagaaaatgc aattcgccgg atttatctcg gtatccatgc aagataccct       300
     acttcggaag cagggcgcat tagagcaaat ccggatgcga atcgaatgct ccacttccga       360
     agttaggtat ctagcataga ttccgagaga aatccaactt cggagaaaaa ccgtttctaa       420
     cttttgccgc gtccaaaata taaagcttcc gtgtgtgttg tgtaggttgt tcaatccgga       480
     tggtcaatca gaaaatttct gtgttggcca aaaggaatag ttgcagggct gttagcgagt       540
     cacttttgac ctggtaacta aaaagtcact atttgcaact aaaattgaaa ggcctaaaag       600
     gtagggattt ttgcctcttt ctggaaagtt tcaggtgaat agtcctcaaa catttttgtc       660
     gagaagtccg aatgttttgt cggggctctt tgaggaattt ttgatgccaa tccggataaa       720
     tttttgaaaa caattataac atccattttc gtttttaggc attcttttga gtgaaaactc       780
     gtagttttga aatcacttat taatctctat cttgatcatt taagtccagg tctttgcata       840
     ccccaaacaa acaaaatcta gtttatttca accaaaattc tacgtcgaat attgcacaaa       900
     caaaaaatta gtttgctttc acaatgtcac ttggttgaaa caaactaaaa aactgttttg       960
     atagttttgc gataatcaaa ttaaattcaa aaaatttttg ttagcaacaa ccaataattt      1020
     ggttatttca tttgacagtt ctctattttt tcatattatt tttgtttcat tggagaggta      1080
     tcaaatgttt atcattgttc aaatattgta taattacagt gcattttttg tccaatagaa      1140
     ctagatcgtt caaaatgtgc tgcgatcttt gtcatcagca tcatgagctt gaagcgccat      1200
     attttgggta gtatttagca agcggaaatc atcagaacct gtgtgggaga caatttttgt      1260
     ttgtttttgt atcgatttat aacagttgta ttataattac ctaattagtt gtattataac      1320
     tacctacgtt tcaagcctta agttacaatt acaaagatca ggcaattcag agagacattc      1380
     aataccctac acaaaaccat tgatgaggct cgcatccatc gttcattgtc tgaaaaaaga      1440
     ttatttacct tattaaagct gggtcactca ataaaaaaga gttatgtgca tcacttaccg      1500
     tacaaaatct tatgcatgag gtttccaaga aaaatgtaac agtttgttta gtttgatatt      1560
     caaaattgtt tgaatctacc taaagctttg gtttgaatct cagatatcca aacaaaaata      1620
     aacaacctaa taaatgatac caataaacca taacttagtt gacataaact gacaaattgg      1680
     tttaaaacta tcagaattat tgttagattt tactaaaacc aaagatagaa acaacaatgt      1740
     tattagttta tttcaaatgc attatggttt tatttcaact ttgtttgtca agagttgagt      1800
     gcttcgtggt cttcgataat gttcttcatc ataatatgtc gtatctggtc aggatcattt      1860
     gtcacgacga ttatttgcaa tgggttttgc caaatttgga gggagatatt gattttctca      1920
     actaaaattt tgaaacgaca aaggtttttc gtgacctgtt ggacaaaact gacaaattgt      1980
     tgaaacttca agaattattt tgattttaaa ccaaaataga aatgaatgtt attattactt      2040
     caaatgcatt catgagtttg aagcaattaa attagaaaaa tagatatttc aaactttgct      2100
     tttgtcaaga gttggagtgc ttcgtggtct tcgataatgt tcttcatcat aatattacat      2160
     atcgtggtct gcgttcaatt ttttttatag aagtcaatga gcgtcctctg acgattttta      2220
     tttgcaaaag tgagttttgc catagtaaat cccatacaaa cttttaacgg cttgcgctaa      2280
     attatagttt caccgatcga gatgaaattt tacacagttg ttataggacc caaacgggac      2340
     ctgaaaagtg ggctggattg agaatcagaa tttcgtccca cactaataat tcattcgaaa      2400
     aaatcgtaag gcttttaggg ggagagggtg tatcaaaatt caaaatattt ctttcgaggg      2460
     agggaggaca tgaaatctta cgtaagactc cctagaaaat ttaaaaaaag caataatttt      2520
     gttgctcaaa ttgaaaaatc ctttgtgaaa aacttttcac tgtatccagc aagtgtcgtg      2580
     cagtgataga ttttcaagac gtaaaacgtt gacgtttgtt ttgatggaaa ttttgaatac      2640
     gtttgttttc ctctttaggg tattaactat attcgcccta agaaatgttg cgctcacgct      2700
     ggctatgcaa tagtacaaac gtagaaaact ttatttcacg gtctcttctt tggtatcaca      2760
     ctaatgacat tatggtaaac cattacgaaa aaactctcct tcaaacgatt ttttttgatg      2820
     atgttgtgaa tccggtataa agaaggacaa acacgttttt taattgttta attctcattg      2880
     tctgagcgtc gcactaatat gtgattagtg cactgtgttc ataaaaaatc gttagaatgc      2940
     agcgccgcgc ttgaatcatt tgatttcgaa gcgcggcgag tgtgagttgt gcgctgtccg      3000
     gtttggtgtc ggtgcgacaa tattttgttt tgaaatttcc tgaatcgaca acgattgcga      3060
     attggaccag acaaaaatta aatttgacag tccattgatt aattggaggg gaaataattt      3120
     ctgaactgtc aaatttaagt tcggactcat tttaacaacg caaatgagac agaccc          3176
//
ID   DNA3-1_AP   repbase;    DNA;    INV; 126 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_AP.
XX
NM   DNA3-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-126
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1942-1942 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 126 BP; 32 A; 28 C; 30 G; 36 T; 0 other;
     gggccagttg caccgtctct gattaaagtt aaccggagtt taatcggccg aatttgcccg        60
     gttaaatatc tgttatcagc tgattaagct taatcgaagt ttaaccgtag acggtgcaac       120
     tggccc                                                                  126
//
ID   DNA3-1_BTa  repbase;    DNA;    INV; 1050 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1050
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 911-911 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 3-bp long (TNA).
XX
SQ   Sequence 1050 BP; 258 A; 265 C; 271 G; 256 T; 0 other;
     caaggggagt ctacgaagtg acatcctggg attgggttca ttttgcttgt acatgaagaa        60
     gagacaaatc taaggttgac gtattttttt ttagccgcca cctcccaacc gttctcgaga       120
     tatcgatttt taaagttacg atttttgcac gtttccgcgc ggagttccgg cgagtcaact       180
     gagcgccggc aagctgcacg aagcgcgttt cctatcagcg ctgcagaccg gccatcctta       240
     tcaacagttc cgtggccgag tggtagagtg ttcgcctacc gttccatcga tcgcgggttc       300
     gaatcccgct tcgtgccgta gcttttaggg tacgccgcaa tgcgttttta caagttttct       360
     ttatttttat cacacaccaa ggggtccgcc ccctggccgc tgcgcggccc aacccccggg       420
     gcgaaaaggc gcgcttcgcg gcgagcgaaa tcatcgaaat cgaccgttga cggttgcaaa       480
     ttcagagtaa ggaaaaagtc attaagaata ttgtgtggtg ggaaattttt atttgaaaca       540
     tcattttatc attcaattaa aattatttac ccagtaaccg tcaacggtcg atttcgatga       600
     tttcgctcgc cgcgaagcgc gccttttcgc cccgggggtt gggccgcgca gcggccaggg       660
     ggcggacccc ttggtgtgtg ataaaaataa agaaaacttg taaaaacgca ttgcggcgta       720
     ccctaaaagc tacggcacga agcgggattc gaacccgcga tcgatggaac ggtaggcgaa       780
     cactctacca ctcggccacg gaactgttga taaggatggc cggtctgcag cgctgatagg       840
     aaacgcgctt cgtgcagctt gccggcgctc agttgactcg ccggaactcc gcgcggaaac       900
     gtgcaaaaat cgtaacttta aaaatcgata tctcgagaac ggttgggagg tggcggctaa       960
     aaaaaaatac gtcaacctta gatttgtctc ttcttcatgt acaagcaaaa tgaacccaat      1020
     cccaggatgt cacttcgtag actccccttg                                       1050
//
ID   DNA3-1_DF   repbase;    DNA;    INV; 940 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-940
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 762-762 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3-bp TSDs. ~25-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 940 BP; 294 A; 158 C; 159 G; 329 T; 0 other;
     caggcaggct ccggttttca cttttttttc tcgttttcgt ttttgggcga aaacgtacgt        60
     tttcgtttta ggtgctccgg ttttcacaaa ctttttgtca tcgtttcgtt atcggaatgg       120
     ttcaaacagc tgactttttt tggtcaaaag taaacaacgc gaaaaaatga cttttatatt       180
     ttcaattgcc tgttttgaag ccaaaagaag gcagaaattg attgatttaa gaaaatcgag       240
     acatcttaga tgcaacacat gtgtttttaa tatgtctgac gatcggtaaa ttaagttgtc       300
     ttacttacat tttcaaaagt tcaaataagc ctccatcaga aatcagctgt ttcccacaat       360
     aaggggctgc cacctttttt gcagctttca ttccactatt ctcaaccact tttttactgc       420
     acttttgcca tttaagaaac taaattaatc atatttattt ataaaaagct tatttaactt       480
     ttctttacaa atattttttt cttcgttttc attttataag tatttttaag tggttgtttc       540
     gttccactac aagtacggca gcattgacga taacttttgg caatagattt atcggcccct       600
     tagcaaaacg aaatttgttg ttgccgacgg caaatatttt atgtatgaaa tcaaggtggg       660
     gtcagaaaat aattatttaa aaaataaata cgaattagat tgacctactg atgatgtgaa       720
     atgaacatca atagaccaag gagtcaacta tttttttcct tttgcaatta agaaccgatt       780
     tgatgtagaa aaaggcattt acttttcatt tcgacaaaaa aaacttgccc gtttttgaaa       840
     acgaaaaaag tcttgtgaaa gtgaaaacgg gagcaccaat tttcgttttt gaaaacgaaa       900
     acgagagaat cttgtgaaag tgaaaaccgg agcctgcctg                             940
//
ID   DNA3-1_DTa  repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   05-JUN-2012 (Rel. 17.08, Created)
DT   05-JUN-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-455
RA   Kojima N.F. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1434-1434 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus
CC   TSD 3bp
CC   TIR 40bp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 455 BP; 160 A; 75 C; 81 G; 139 T; 0 other;
     agggggattc cctaaactgt tgaattgctg aattgttgaa aattcaacaa aaaatttcag        60
     caattaaggg aacgacccaa aatggttcct gttgaatttt caaacagctg ttatttgttg       120
     aaaagtttca cggaacttaa agcatgtaaa atttgattta ttattgctag ttactgtcta       180
     aaagtgttac caaggtaaaa agaaccacaa atatgctttc taagttgatt ttaaaataaa       240
     taatgcgtac tggtgatact aaaatgttac agagttgcca cgacttttaa aaaaaggtga       300
     caactctggc ttttcagcaa ttcaacaaaa ttttcagcag ccccgaggct gttgaattgc       360
     tgaaatttct gaaagttgac tttgtatgga acagctgatt aacagctgac caaaattcaa       420
     caattcagca attcaacagt ttagggaatc cccct                                  455
//
ID   DNA3-1_LMi  repbase;    DNA;    INV; 476 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 19.11, Created)
DT   02-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-476
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2966-2966 (2014).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 476 BP; 149 A; 100 C; 91 G; 136 T; 0 other;
     cactacgttt acatgtaaca catcttccgg aagacgaaaa ccgattttcg taaaccgttt        60
     ttcgctgtcg tgtttacatg gcacagcctg aatcggattt cctaatccac ttaagatggc       120
     ggctgaaaaa cagctgattc agtccccgat ttagtcagca taatcgctat ttttctttac       180
     ttaaatacac agattcatgc tcactctaat attaatactt ttatttcaca ttagaaaata       240
     tcactctgtc catatgtgcc gaaaattctt accaaaaaaa cacaatctga caagccaaga       300
     acgcttcaaa aacggttgcg tttacatggg cacgaaaatc gattgtggaa ctggaaaacc       360
     gctttagaga agtggatttc cagaatcgat tttggagtgt ttacatgacc aaccaaaagc       420
     ggaattggga aatcggttta cgaaatccgg ttttgggagc ccatgtaaac ggggtg           476
//
ID   DNA3-1_PBa  repbase;    DNA;    INV; 99 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-99
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 598-598 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 99 BP; 29 A; 22 C; 20 G; 28 T; 0 other;
     ggctgcgttc cgatattcac tgccagtact gaaaatctat aatatacgtg acctgaacta        60
     tatattttca gtactggcag tgaatatcgg aacgcagcc                               99
//
ID   DNA3-2_AP   repbase;    DNA;    INV; 126 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_AP.
XX
NM   DNA3-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-126
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1943-1943 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 126 BP; 35 A; 32 C; 26 G; 33 T; 0 other;
     gggccagtat taccatctcc cgttaaattt aaccgactcc taaccggccg aattcggccg        60
     gtaataaaat ctgttatcag tcggttaagc gtaatcgaag cataccgatg attgtaatac       120
     tggccc                                                                  126
//
ID   DNA3-2_BTa  repbase;    DNA;    INV; 1164 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1164
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 912-912 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 3-bp long (TNA).
XX
SQ   Sequence 1164 BP; 338 A; 196 C; 231 G; 399 T; 0 other;
     aggcctagat acacacggcg attaatcgcc gcgattgcaa tcgcggcgtt taaacgcagg        60
     tgtattcggt caatcgccgc gacgggcgag tgaaattctc ggaatttctc caatcgccgc       120
     gattgaattc aaagtaggat tcaatcctac tttttgggcg agtagatgca tttgttgagt       180
     cctgtttatt cttgatggat gcgaaatcca ccagtacatg tggtctacat gtgtttttgt       240
     ttacgttctt ctgtcttcgt ggttctcgca cagagttgct aaaagaaatt tcatcgaatg       300
     aaatttcgtg aaatttcttt tttccccatg aaatttcttt cgaccgacaa aatgtcaaaa       360
     atgcttgttt tttcaaacag aatttgtttt tatttttaaa gagaatagta ttcgtcaatt       420
     agaccaattg gagctactta tttatcaaat atttcctatt taaaaaaaga aatacgttag       480
     cgaaggaaac tgttagtttc tgaaaaatca tttaaattgt ttcaaggata gtttaagatc       540
     cctccctcgc ttttgtacca aaaaaggata gactattagg gggaactagg attctttata       600
     gttgagaaat ttgttatgtt ccaaatatga aagctaacgt cttactttat ccgtaaaatt       660
     tattttggtg ttcaaccggt acggctgtgt gtttaaccaa gatttgagaa aaaaattcaa       720
     aattatgttt ttgctgtttt actcaacttt ctgggcattt ctaaagttcc ctttcacagt       780
     ttaccacgtg tgtataaagg gaattaagga gattcataag tttctagggt ttaatcctgc       840
     attctgagtg ttatatgaaa tttctggaaa tttctggaaa tttcctcatg aaatttcttt       900
     ttataatttt tcatttttgt aaagatgtag caatttctat tgctctcagg aagaaaatta       960
     agaatatcag agataccata tgctgcagaa gtaagggaag tcaggaaagg ttgtaataac      1020
     ataaacaatc agcgctgatc gcggcgatta atcgctaggt gtatacgtaa tcgcactgat      1080
     ggtctctgtt gattgtattg cgttgagcga tgcgacccga accaacccaa tcgcggcgat      1140
     taatcgtcgt gtgtatctag gcct                                             1164
//
ID   DNA3-2_DTa  repbase;    DNA;    INV; 820 BP.
XX
AC   .
XX
DT   06-JUN-2012 (Rel. 17.08, Created)
DT   06-JUN-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-820
RA   Kojima N.F. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1435-1435 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus
CC   TSD 3bp TWA
CC   TIR ~35bp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 820 BP; 281 A; 152 C; 133 G; 254 T; 0 other;
     tgccctttcc tcaccagagc tgaatgtagc attttgacat tttttggtat atgttacatt        60
     tttcccatat attttcaagt ggttctagag gtgggagaaa agagcattcg acaataaatg       120
     ctactacatt ttgatattct cgtgcctaaa ataccaaata tctgagtatt ttttgactat       180
     cgacaaaacg gccatcgcaa aattttcgaa attatcaagg cccactatag atgatttctc       240
     tgcagaaaaa aaattacgaa taactgcagt taacaaaacc tgaccaatct tttgccgctc       300
     aggtttgtca caggaagtaa gaggcaacaa accaccatat cgataagacc accgaaggat       360
     tgcaaaatca acaataaaat gatcccaaaa aaagatctaa tgtgcattgc atagcaatat       420
     ataatgcaaa caaaagctta ataaaacatt caaatcttta ttgtccatgg tcaatacatt       480
     tgattgttca aatctcctgc ttgcggatta gtatttgaga aattatgccc atatctcagg       540
     ttttgaaaaa tgtcttcctc atgaaaagct ttcaacgctt tcctttgtgt ttccgtgcct       600
     gcgctgtttc tctagctgtt tctgaatttt cagcagaaaa cacatgacaa aaataagata       660
     atttttgtta gcattgaata ttttgaattt aaaagcaaag cacatctgtt ttcgaaataa       720
     taaatgctga atgctaaatg ctttcccgtg cggacaggaa atagcatttt tttgaatacc       780
     gaaaaaatac tacagtatgt acatcagtga ggaaacggca                             820
//
ID   DNA3-2_LMi  repbase;    DNA;    INV; 922 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 19.11, Created)
DT   04-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-922
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2967-2967 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 922 BP; 299 A; 182 C; 176 G; 265 T; 0 other;
     aggccaattc acactgtccg tcacgtcaac gtcacgtcac ggcaccgtca cgtcaagttg        60
     tattcacact gtccgtcagt gtccgtcacg tcaattcgcc catctcaata cgcgatgttg       120
     aaagtgaggt tatgagtggc gatctgttat gtagaaagtc atagtttaat actagaattg       180
     agggaacaac aacgctaaat gttattgacg gccaaagaaa actttacagt gtatgttttt       240
     ggccaactta ctgggaactg aaacaacatt tcaaaacatc gacatctatt ttcaagcgaa       300
     aaaataaaca tatgaaaaca tcaaacaata cttataagag cataaatagc gcctgtttac       360
     tttatccatt acgatttgcc cgctgacatt gttaataccg tcgtaaacaa ctgaattttt       420
     gtctttcatt agaactgact ttttcattta aaatgttatt taatgaaaaa tgcgtaatca       480
     aattacaatc ttattcaaat aaacagtttg cttcagtctt ttctgttaca atgttacgta       540
     acataaacca ttttttggtt tcagatatcc gacctcgatt ttagggggac actcaattga       600
     caaaaatatt taagtcgtca tgaaacattt gagatttacc cctaaaacga agtataacaa       660
     caaaataaag atgaataaga cacatttgca tataaacagt gcaatcgtcg actgcaacat       720
     gtaattcgcg tgacgaaaat aggttaactt ccgatgttag cagacggccg ttccgtcaaa       780
     acattcttct cgagaaagct tgacggacgt tgacgtgacg tgacggtccg gtgacggaca       840
     gtgtgaatgc cgccattaga aatacattgc ggaatgttct gacggacggt gacgtgacgt       900
     gacggacagt gtgaattggc ct                                                922
//
ID   DNA3-2_PBa  repbase;    DNA;    INV; 1438 BP.
XX
AC   .
XX
DT   26-SEP-2013 (Rel. 19.03, Created)
DT   26-SEP-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1438
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 599-599 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. TNA TSD.  ~510bp TIR. It includes
CC   two tRNA-like seuqneces.
XX
SQ   Sequence 1438 BP; 463 A; 244 C; 264 G; 467 T; 0 other;
     caaggagatg acgccaatta gaaaatcgct tttccaacga gtcatagtgc gttcgatagc        60
     ttacatgtag ctaataaaaa ccctaaaggc gtttgtgcca atgggccttc gtttaggaga       120
     aattacaaaa caaagttagg gtcacgcaac tatgtcccat gtaaagaaga acattagaat       180
     ctttttcgag taagcggcgt agctgagccg actaaggctc ccgtccatac atttttgcgc       240
     cggcggcgtg cgttcgagtc ccgccgacga ctgcttcgct ttttttttca attttggata       300
     tataaaagac actacattaa tcattattta ttttttttaa tttattttgt ttttctatgt       360
     aaaaataagg acatttcggg atgtttgaac gcaatacgaa ataaaaaaca gttttaaagt       420
     catgaactga ttatatttct catgcaatgt acatgtgtta ttttgtcaag aatattttgt       480
     acaatataaa ctttctttta taattatata tttatttaca tacgataaaa ggtttccatc       540
     gcttcgcaat gttgtggatg aaaattgatg taaaaataaa catcgcatat cgatgtacat       600
     cttggcggta taaattataa attatatttt ggtttattat ttttgttgtg gaatttttta       660
     tatgtagaat aaaagtgtga aatattataa aaagatgaga ctcgcaaaag gacaagcagg       720
     tatattcgtc agtgtttact tgtaagaaag gacctttgtt aggtagaccc cctcccctcc       780
     tttcgacctt tttaacggtt ttcacagagg gactctcaca cgttgtaacg tctgaccagt       840
     ttcgtggtag catttgtaaa gagagcgtgg tgcgaaacat cagtaaaaat ggagacaaca       900
     tttattaccg atgaaactgt cgaatatatg caattataaa agaaagttta tattgtacaa       960
     aatattcttg acaaaataac acatgtacat tgcatgagaa atataatcag ttcatgactt      1020
     taaaactgtt ttttatttcg tattgcgttc aaacatcccg aaatgtcctt atttttacat      1080
     agaaaaacaa aataaattta aaaaaaataa ataatgatta atgtagtgtc ttttatatat      1140
     ccaaaattga aaaaaaaaag cgaagcagtc gtcggcggga ctcgaacgca cgccgccggc      1200
     gcaaaaatgt atggacggga gccttagtcg gctcagctac gccgcttact cgaaaaagat      1260
     tctaatgttc ttctttacat gggacatagt tgcgtgaccc taactttgtt ttgtaatttc      1320
     tcctaaacga aggcccattg gcacaaacgc ctttagggtt tttattagct acatgtaagc      1380
     tatcgaacgc actatgactc gttggaaaag cgattttcta attggcgtca tctccttg        1438
//
ID   DNA3-2_RPr  repbase;    DNA;    INV; 785 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-785
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3221-3221 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 3-bp long.
XX
SQ   Sequence 785 BP; 305 A; 121 C; 137 G; 221 T; 1 other;
     gggtacgttt acaacggagc tgtgagtata gatgatagca gagatgataa ctgatagagt        60
     aaaatataat cgctgattag tgtgcacaac agagctgtga tacatgcaac atgtccgagt       120
     agtgaagaag agtttttatg ttcagcagca acaaaaaggt atattttaaa gaaaaaacgc       180
     tttagaaaat atcatgtaca tcccataaat aaaaaacgaa gtactttggg cgaatttcac       240
     tatttatata aggaacttag aaattatccg gatcgttttt ttgaatatgt gaggatgggt       300
     ccacccacat tcgactatat tttagaaaaa ataaggtcaa aattaagaaa actttggaaa       360
     aattgtcatg gaaatcctat aaccatagaa gaaaaactag tgattactct taggtaagta       420
     atgattttat tgaaaaaaaa aaacaaataa atacacatga aaataaatgt aagcacgatt       480
     taaaaaacaa aatattgttt aaaagtaaat aataaaataa taaccaaaaa taatgagtaa       540
     agacagcact aaataatttt tckacgtcca ttttgaagct ccgatactgg agttcagcta       600
     gcagaaaaat gaaaaattca attctatcat ctatgctcgt ttatagcagc gcgtatgagt       660
     cactagtcga agcttcgttg tgcacgctca cataagaatg tactaggtta ttctataagc       720
     gctgatgcat cactgctatc atctccgcta tcatctatgc tcacagctcc gttgtgaacg       780
     taccc                                                                   785
//
ID   DNA3-3_AP   repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-3_AP.
XX
NM   DNA3-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-169
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1944-1944 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 169 BP; 43 A; 36 C; 40 G; 50 T; 0 other;
     aaggcgggtt tccactatat acacgtacgc gtgtacgtgc atacaaatcc tttgctgtga        60
     ttggttggtt aggttaagtt accacacgat taaccacgat accgtgttgt tggacatagc       120
     tgaacatttt tcgtgtacac ggcaaacgtg tatagtggaa acccgcctt                   169
//
ID   DNA3-3_BTa  repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-255
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 913-913 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 255 BP; 78 A; 49 C; 50 G; 78 T; 0 other;
     tggaccgcgt ttaacagaaa ggaaccaagc cacatcagct attgccaagt ttaactgggc        60
     aattcaattt tttacgagag aacgtttgtg cggattcctt tgaaaatttt aaggaatttg       120
     cttcgtacca tggagaaaat tcactgaaat ttgcacgaaa atccgcacaa ccgttttcat       180
     gtaaaaaatt aaattgccca attaaatttg gcaatagctg atgtggcttg gttcctttct       240
     gtttaacgcg gtcca                                                        255
//
ID   DNA3-3_LMi  repbase;    DNA;    INV; 1338 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 19.11, Created)
DT   05-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1338
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2968-2968 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1338 BP; 362 A; 298 C; 285 G; 393 T; 0 other;
     caaggagagg acgcctactc gtcatcgccg aattcgtcca aatttatggt acatgtaggg        60
     cgtggtgaga tatgaaagtg caccaagtgg gaactccaga tggctaagcg tttaggaaat       120
     aaaaggaatt ttgatacgga tctatcacca tatgcacctt atcaactgcc cctgagagag       180
     tctgtttaga aagcggtgtt tggctcagcg gtaagagatc ggatttttat tgaaaggttc       240
     gcgggttcga ttccgcccgg cggcaaatat ttttttgctc cttggcaatg cgtacactac       300
     tgacttcaca attaaccgca acatcatata tgttattttg tatttatatg tgcacaacat       360
     cagcatggga cgtcattatt taaaacaagc atattatctt gcaaacttgg ggttgtgact       420
     acattccatt atacatcacc agctgtcctc gcaagtattc agcgacatgc tgcgttacgc       480
     gtggttcgct gctggactgt gcgatgaaag aagctgtttt cagaatgtca atcaagtttg       540
     tttttctatg gagacattaa aaaaaccatg taactgcaaa agggcggcgt tcataacgtg       600
     cgcaagatgc ggtcaaaatt attgcttccc ctgtttcttc gatgaatatc accccggtac       660
     atgtaattga tcaattgcaa aagaatggaa gtatcgattt acatacacga cgtccccaag       720
     tacgcgttaa ctacagtccc tttttaaatg tttgtagtcc cgaatttcat ccaatgccct       780
     ttcttttttt gcttatataa attaataaaa taacctatat gatgttgcgg ttaattgtga       840
     cgtcagtcta catctacatc aatactctgc aaaccactgt gaagtgcatg gcagagggta       900
     cgtcccactg taccagttat tagggttttt ccccattcca ttcacgtatt gagcgtggga       960
     agaatgattg tttaaatgcc tccgtgcgtg ctgtaattaa tctaatcttg tcctcacgat      1020
     ccctacggga acaatatgta ggtgtacgca ttgccaagga gcagaaaaaa atttgccgcc      1080
     gggtggagtt gaacccgcga ccttctcaat acgaatccga tcttttaccg ctgagccaaa      1140
     caccgcttcc taaacacgcc gtcacaggga cagttgataa gatgcatatg gtgatagatc      1200
     cgtatcaaac ttccttttat ttcctaaacg cttggccatc tggagttccc acttggggca      1260
     ctttcgtgtc tcaccacgcc ctacatgtac cataaatttg gacgaattcg gcgatgacga      1320
     gtaggcgtcc tctccttg                                                    1338
//
ID   DNA3-4_AP   repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-4_AP.
XX
NM   DNA3-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-127
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1945-1945 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 127 BP; 34 A; 33 C; 29 G; 31 T; 0 other;
     gggccgttct tacgacgtcc ggttaaagtt aaccgacact taaccggccg aattctgccg        60
     gtaaaaaaat ctgttatcag tcggttagcg ttaaccgaca ctttaccgga cattgtaaga       120
     acggccc                                                                 127
//
ID   DNA3-4_BTa  repbase;    DNA;    INV; 5276 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5276
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 947-947 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 5276 BP; 1499 A; 1136 C; 1026 G; 1604 T; 11 other;
     tagtacggtg ggtacaatca aataatggcc aaaaccctgc actttttgat tggaaattgc        60
     cgctttcagg gatcattctt atggtcataa gaagcccttt tagaagggga agcactctaa       120
     ggtccgtgca ggaaccaaga tggcggccga taaagatggc cgccgagcgt tttttcagcg       180
     cgctatatct cggaaacttc gtgtccgatt ttcgttttct tggtctcgtt ttgaagctaa       240
     aatgcttctc cagaagtcta cctcataaat tttttcgcct aaggcacaca taaacggtca       300
     ttaggaaaat tttgaaattt tgaaatttca cccaattttc aagagcgtat aattatttaa       360
     cacgcgagaa aatgacgttt tttccttaag taacggcgat gggaaattat ctgactttta       420
     atttgatacc aaaacaattt ttttgcgtca aaaaatgcac cctccagagc actttaagtg       480
     agcgtcgcgg tacgcggtgc gcggtgaaaa cggcggaata cgggcaatta acgcgctacg       540
     caagtcatac gcgcgctata tctcggcaca ttctcgtccg attttcatta ttttgggctt       600
     gtttagaagc tatgttgaag gtcaacgagt gttacggata tacttgcgtt tttcctccga       660
     cttttccggg tattttccaa atgaatagaa aatgttcaaa ttgccaaaat ttacaacgac       720
     gaataatttt caatagggtg gagaaacaca cctcctctcg tgttttgtag aaagatcatt       780
     ttctgacgtt taaaatgata ccacaaccat ttttgtgcga tgataaataa atccatgagc       840
     tcaatttgaa gcgcaccccc gtggcaagca ctttccgttg gtaggcgttt tgacccgatt       900
     cgtcgccgcg ccgcgcctta tgcaacccaa gtggacgcga ctttgcgtga cttcccggat       960
     tctaagacag attcttgata aattgcgatg tacagagggt tatctcactt cccataaaac      1020
     ttaatttgtt tatcaagatg aattttcatc ggtatggttg gtatatacgg aggggaaaag      1080
     ggacagaaat tcgtaaaaat caacatgaaa gcgtattctc ttttggcctt ggggtatttg      1140
     ttgtctgttm taaaattagc tccaaagctc aaaaaagagc tttcaaagtt ggcgcggata      1200
     tcccacgcca ccctgagagt ccacctctac atcaagacaa actttctacg caaagttasg      1260
     gagtgagtat asattagcaa gaatgccgtg ttttcacttt tggagtccct aaacaaggtg      1320
     gcaactctgt tagtgtatct gcttcctatc tttgcattac atagatagtt tgtctgggtg      1380
     tagaggtgga ctctcaggat agcgtgggat atcccctcca ttacggcctc aacttcgaga      1440
     gcttttttag agctttggag ttgatttcag agaaaaccaa cggcaccatc gtgttcctcg      1500
     cgaaatatac gggaatcaat acttaaatcg caaattcttc acgcatgcaa gagcttcgat      1560
     cgagtcccct ttttttccca gaaattgaat atgaaagtta tcttgagatg ttacacgagg      1620
     ataccagtgt tcaatatatt aaattctaaa aataaaaggc aattacatat tttcctcata      1680
     aataatttcc tttctctaga ggaagaagcc gcgacatgaa taggctctca tacatttttt      1740
     atttctaggt tttcatcagg cttaacttat tgtaacggga aaagcaataa cgaatacccg      1800
     ggctgctctt tcattagctg atattggaat gttgctgtaa ataattccag gtacggggtg      1860
     atacaatcga acttgatatg cccaggggtg gaatgtcaat aagaacattt cgattcgacg      1920
     catacagggt ggctcagtat taaatatgaa acactcaaga accgattatt ttcgtcaaat      1980
     aggatttttt tttaacatta accagaattc ggctaactct atccgacatt attgcctaat      2040
     tttctctcat gttttctttt ctttaagagt aattaagaaa cattctgcct tcaaattttg      2100
     ggagtacatg attcataatc aaggatattg atgaaaagat ctaaggtgtt tgttgcttgg      2160
     tttctctgta aattaataca acctatgggg acactaggca atatgaaata taatcaggct      2220
     gattgcaatc gatttcgtcc gattttcttc acttttttac aaactttttg acagttcagt      2280
     agatttggag cgaaatattt ctctatataa gatggcatat tctatagaag cattctccat      2340
     gtaatatatc cctgcatcac tgcatcaccc ctctccgcga atcctgcgcc aactcaatcc      2400
     taagctctgc actcaacccc cacatctcct tccggcaggc acagttaggc cgggtttttc      2460
     tgcgactctg agacaccctc ttctgtgtta tgtgaggttc agctcagtat tttttctttt      2520
     ttcctcttcc ttttatttaa actttttttc acttactcat atgattctac twactatttt      2580
     tgtgattctt acagttctct atacaaaatt gttttatttt tcatggcaaa gtatcatctt      2640
     taacccccac cccctcttag cgcttttatg aagtggttcc cagttctgta aaacgtcaaa      2700
     acgaaaaagc gcaacactat cctgaactcc ttccccttcc cttatagcgc tacgtatttt      2760
     atgaacggcc ccctagtatk aaccgagcac aattctaaaa tatcgtcaca tcatcacgca      2820
     ttcatccatc attggttttt atgaccctcc ctgtatgctc gttctcctct aactcggacg      2880
     tcaaaacaca cagttttttt tatcmatgaa cccccttgga aacgtgatcg aaggcgtaga      2940
     aggacgcagt ttcgcctccg tgatgaggca ggagccaatc gggacggctc ggtatctctc      3000
     gaagtgacga ggcgtcattg gttgtcaagc actcctacag tccgcgagcc tccaggggga      3060
     cacccaatct agtacggtgg gtacacaaaa aaaccctgca ctttttgatt ggaaattgcc      3120
     gctttcagga atcattctta tggtcataag aagccctttt agaaaaaatg tcctcacgga      3180
     gacctcgaaa ttcgtccgat tatagctgaa attacaacaa acttcaggga gaggcttttt      3240
     gaactgtacg gtgaaggagg ggggaggggt ttcaacgctc ccatcattct tcggtggtgg      3300
     gggggggggc cgaaataacc tggccttgcc tatgctgatg atattttctt tcagtttact      3360
     cttctatttt tgtgagagtt tgaagaatca gtcagcttga ctatcatctc aattgtacac      3420
     tcagaaccta atgtttgttt tcttttctta tttcatcatc cataaattat gcacgtagcg      3480
     gcccttctgt aaggctggaa gattccctgg tgttctctcc tttccagaga tatgattcct      3540
     tttgctaccc acgagtattt caatttggcc atttctaaaa gacaggcaat aacagaggca      3600
     gataaattgc ttcaccaaca tcwtcctcct tttcccgact tccaatgatt tcaaatttct      3660
     tacttcggaa atttaaaaaa ttcttgttcc tcaaattaaa aaacaaatcg ctaggggtgg      3720
     ggggactaac gtggagatgt gaatttttcg atcgaaattc actaccatgc ggagsgcaaw      3780
     tcatatcata atgatttttg ctgaagagtt ttgtagctca aataaaagtt tcccccaaga      3840
     cctttacgat acgtgcacaa tcgctgctta aggcacacaa taaccgagga tatgatgcgg      3900
     tactgcctaa cttttagtgw aaggccggaa tgtcaattaa ttacggagtt caaaatmatg      3960
     ttcatgttct ctcaagattt acaaatgaat ttaaataagt acgaagtaat tttttggtca      4020
     aaataatcct atcgtgttcc acctttcctc cgtcattgca aaacttccca gaaaaaacat      4080
     cgaaaacagc tagtcgatct ttcaaaccat ttcatatcac gtcttatacc agacaacaaa      4140
     taccccaagg ccaaaagaga atacgctttc atgttgattt ttacgaattt ctgtcccttt      4200
     tcccctccgt atataccaac cataccgatg aaaattcatc ttgataaaca aattaagttt      4260
     tatgggaagt gagataaccc tctgtacatc gcaatttatc aagaatctgt cttagaatcc      4320
     gggaagtcac gcaaagtcgc gtccacttgg gttgcataag gcgcggcgcg gcgacgaatc      4380
     gggtcaaaac gcctaccaac ggaaagtgct tgccacgggg gtgcgcttca aattgagctc      4440
     atggatttat ttatcatcgc acaaaaatgg ttgtggtatc attttaaacg tcagaaaatg      4500
     atctttctac aaaacacgag aggaggtgtg tttctccacc ctattgaaaa ttattcgtcg      4560
     ttgtaaattt tggcaatttg aacattttct attcatttgg aaaatacccg gaaaagtcgg      4620
     aggaaaaacg caagtatatc cgtaacactc gttgaccttc aacatagctt ctaaacaagc      4680
     ccaaaataat gaaaatcgga cgagaatgtg ccgagatata gcgcgcgtat gacttgcgta      4740
     gcgcgttaat tgcccgtatt ccgccgtttt caccgcgcac cgcgtaccgc gacgctcact      4800
     taaagtgctc tggagggtgc attttttgac gcaaaaaaat tgttttggta tcaaattaaa      4860
     agtcagataa tttcccatcg ccgttactta aggaaaaaac gtcattttct cgcgtgttaa      4920
     ataattatac gctcttgaaa attgggtgaa atttcaaaat ttcaaaattt tcctaatgac      4980
     cgtttatgtg tgccttaggc gaaaaaattt atgaggtaga cttctggaga agcattttag      5040
     cttcaaaacg agaccaagaa aacgaaaatc ggacacgaag tttccgagat atagcgcgct      5100
     gaaaaaacgc tcggcggcca tctttatcgg ccgccatctt ggttcctgca cggacctcag      5160
     agtgcttccc cttctaaaag ggcttcttat gaccataaga atgatccctg aaagcggcaa      5220
     tttccaatca aaaagtgcag ggttttggcc attattcgat cgtacccacc gtacta          5276
//
ID   DNA3-4_LMi  repbase;    DNA;    INV; 2489 BP.
XX
AC   .
XX
DT   07-JUN-2014 (Rel. 19.11, Created)
DT   07-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2489
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2888-2888 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 2489 BP; 748 A; 531 C; 522 G; 687 T; 1 other;
     gggtacggcc atagtgaacg gctccccgct agctgctcgg ccgcttaact cgcagcggtc        60
     ggaccgcgcg cgctgcaacg gcgcgatggc agctggtggc ggccacagtg cgcagccaac       120
     cgcgcgccgg ctgatgccaa tacatgacca aaattacttt tcgattttct tgctgaaaaa       180
     aaaatactgc atgtgtatga aacaaagcta catcgcactc cggtgtcagt ttttcgataa       240
     aaattctcct tctgctgtaa aaaaataaaa accacctctc ccggttttgt gcgttttcct       300
     tgacgtagga tacttctcac tcgattctga ggaaactaat tgtcgtacct cactgagttt       360
     tgcacatctt gcaggctaac ataacagctt cataacggag tgtctgtttt tccggtattc       420
     gccatagtta ttacgatact taatttccag ttaacctatc gcataacatt tgaagctttt       480
     gcagtgaaaa atatagtcgc tgactacttt tcgtttggtt aactttaggt tatacattac       540
     tgcgtacgaa atgtagccaa cattgtgaaa ttgtttttaa acctgaatag aaagcgatac       600
     atcgctccag tatagcgaac tgggtgttga aatttgaggg cgctagcgcc acgcgctctc       660
     cttcggcgcg ccatgtgcac aactactgag cctctagcct gcagctcagt cagtcaacct       720
     tcgtaataaa gcacatgccc gagccaacag aaaatgactt taaaaaatag caaagtttat       780
     ctgggacaga tgccagttct ctaactcgtt ttaaaatatt ggtggcatac aagttcggat       840
     aaaaaaaaga cagtaaatct agttctatgt cttaaagtta caaatattgg attgctagct       900
     gtcactgacg gaaaattgca agttcataat ggggactgta ggggtctaag gaaaagagaa       960
     tgctagtgtt tgtgttgaat gccccttccg acatgcaata gaaatgggaa gactaaaatt      1020
     accagaagaa tttttgacag gatccaatag caagcgtcta aatgttatcc aaggcgctgc      1080
     agcatttttc ctctgaatca atatttaatt agactttctc cacaaaaaaa caacagcggg      1140
     gggacattaa agatgttttc aacggcactg ttaagttgga atatgcagtt cgtatgtgca      1200
     gcttaagtgc atcttctttc tagttgagtt taatgcaagt aaatcagtgg tgctataatg      1260
     taactgctgt tataacttgg caccatccac ggatgatgat gacgaaaaaa aaaagttctg      1320
     atcgcaaatt gcataaaatg ccaaaactgg actcactagt tgctggcatg gggtagtaac      1380
     tgttagatca cgacagggaa aaagttgcaa ctgctgtcct ataacctcaa tatacataca      1440
     aagtaactat ataaggcttt ctatagtcca tggtgtggct gatacagcaa ccagtcaaat      1500
     tttaatttca agtaaaaaca gtcttggttg caaagtggtt ttattaatta ccaatgacgc      1560
     gtttcgccct cacagcaggg tatcatcaca ttatctgcat gacaaacgtt acgcaaattg      1620
     ctacaacagc ccctgtttca ctactttaaa tgttgtagta attcttgtgt aacatttgtc      1680
     atgcaggtaa gatgatggcc tgctgtgagg gcagaacgcg tcattggtaa ttaataacac      1740
     cactttgcaa ccaagactgt ttttacttga aattaccctg taactgacag tgtaccgtct      1800
     gtcacagtgt atgtattttg agattatagt aggacagcag ttacaattat ttcactgtca      1860
     aggttcctaa tcacataccg acattttata ctgttcacga acaaaaaaat tttggtaagg      1920
     taaattgaca tggaatggca gcaaagtaat taagaatgaa gtagcctcgt gttagtggct      1980
     cacaaaaaag ccaatttcac gtgaaacctt tagcaaagaa gtaaccattt catattctga      2040
     gctaaataac ctatctacac gtaaattatc ttgaatgtct agttgtttgc tatattaaag      2100
     tactggtatt cttgcaccaa tatgaacaac aagatgcaat taaagacatt gcaaaaccgg      2160
     ttgtgcgagt ctacaaaagt tcaataaaat tcagctacag tgaattaacg gcctttcatt      2220
     caacactttt gagataaacg cgtctttatc agctcccatt aaacgcgacg cgcagcgcac      2280
     agcgttgaaa cctcggcacc cgcgagctga gagcggmaca agaaacataa attctttctt      2340
     gcacgcgcct gtgaaagcga tgtgagcgag ctgaggcggc cgcgcgggtg cactatggcc      2400
     accccaatgg gatcacccac tgggttttcc aaccgcctcc ctgccggcga gaagcaggaa      2460
     gcgtggagcg gctcactatg gccgtaccc                                        2489
//
ID   DNA3-4_PBa  repbase;    DNA;    INV; 1096 BP.
XX
AC   .
XX
DT   26-SEP-2013 (Rel. 19.03, Created)
DT   26-SEP-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1096
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 600-600 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. TNA TSD.  ~540bp TIR. It includes
CC   two tRNA-like seuqneces.
XX
SQ   Sequence 1096 BP; 396 A; 153 C; 155 G; 392 T; 0 other;
     caaggagtgg gcaagaactg taaaatgcca aatgagatga atcatagctc attcgaaagg        60
     ggggaacaag tatattaaaa gtgtaaaagg gttagcgtga atgggcctta ctttttaaga       120
     aaattgcaat taaagtttaa cattgggacg tttgtacgtt aagtactaga atcttgaacc       180
     actatccaag agagcgtcgt ggctgagaag gctaagtgct agcgttacat ttttccctcc       240
     gtggcggacc gggttcgaat ctccgcagca tcaatttttt ttactttttt taaacctttt       300
     gctattatat tttacaattg cattatcttt agtatttttt aaattaatta ataataatgt       360
     acttacatat actaataaaa ttaagcaact ttttattaat aaaaaattaa taaaaatatt       420
     taataaatta tttattataa taaaattatt tataaaggta aataattagg ccttaacgag       480
     cagatttatt ccgaaaaata atacactttg agagtttcta caatatcata aattataaga       540
     ttgtaaatta taagatgtta taatttataa acgttataaa ttaaagtgta ttatttttcg       600
     gaataaatct gctcgttaag gcctaattat ttacctttat aaataatttt attataataa       660
     ataatttatt aaatattttt attaattttt tattaataaa aaattgctta attttattat       720
     tatatgtaag tacattatta ttaattaatt taaaaaataa taaagataat gcaattgtaa       780
     aatataatag caaaaggttt aaaaaaaata aaaaaaaaat ttgatgctgc ggagattcga       840
     acccggtccg ccacggaggg aaaaatgtaa cgctagcact tagccttctt cagccacgac       900
     gctctcttgg atagtggttc aagattctag tacttaacgt acaaacgtcc caatgttaaa       960
     ctttaattgc aattttctta aaaagtaagg cccattcacg ctaacccttt tacactttta      1020
     atatacttgt tcctcccctt tcgaatgagc tatgattcat ctcatttggc attttacagt      1080
     tcttgcccac tccttg                                                      1096
//
ID   DNA3-5_AP   repbase;    DNA;    INV; 134 BP.
XX
AC   .
XX
DT   31-AUG-2009 (Rel. 14.09, Created)
DT   31-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-5_AP.
XX
NM   DNA3-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-134
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1946-1946 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 134 BP; 36 A; 29 C; 32 G; 37 T; 0 other;
     gggccgattt caccaacaca gttaatcacg gttaaagtta accggagttt aatcggccga        60
     atttggccgg ttaaatatct gttatcagcc gattaagcgt taaccgtgat taactgtgtc       120
     ggtgaaatcg gccc                                                         134
//
ID   DNA3-5_BTa  repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-422
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 914-914 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 422 BP; 119 A; 91 C; 92 G; 120 T; 0 other;
     ggccttgtct ccacgggacg ttttcatggg atttgtccca agttcgaatc gcaggaatga        60
     aacttctggg atttttccca gttaccgtct ccacgggacg gggctcatac ggtcctgcga       120
     ctagtttgcg cgggaagata aattagttaa agtcgagtgt ttaaccggga ttaaaataat       180
     aattgcactc aattgacaat tagacacatt attttaacta aacaaacatg aacaatggag       240
     taatcaacaa aatatcgcac aattcgtttt cacttcttct tcctctctca gtgggtccta       300
     ggggtacaag gaccatactt ggtactggga aaaatattga ttaactcaat atttttcccg       360
     acttcgtaag tgggattttt ccctgggaca aatcccgtga aacggcccgt ggagacaagg       420
     cc                                                                      422
//
ID   DNA3-5_LMi  repbase;    DNA;    INV; 1245 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1245
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2969-2969 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1245 BP; 391 A; 241 C; 256 G; 357 T; 0 other;
     agccctttct acacgggaag tgagagctta cgagattacc catgatgcac cggtcacgcc        60
     gtccgcgtac agtgtagacg cgtccacttg cacaagatgc acgcatacga tcgctagtag       120
     acggaatagg atggatccta ttctcacgcg tatggaagtg cttcgcgcat gcgcagacga       180
     ccgaatgggg aacccagctg acaaacgaag ccaagtcggg aatttgtttg agaatgtgta       240
     cttgtctcct gctcagagga acgtagtttt tcgactcagt cgtaagtatt ttaggaggtg       300
     atactataga ggaattgcat taaaaattta atataacctg tgtacaattt ttattgaata       360
     cagagatata gctgttaata tgaaatccaa acaaacgtag agcaaatgta aatcaagaaa       420
     ttttcactga tttatccgtc ggttcttggt agtacaacat cacacttact taaaagtaga       480
     attttgtgta tgttctacac gttcatttcc acttagttac ccggttttcg gcttactagg       540
     acatattcag actttaaact acgtcgaaaa ccggttattt aaataaaagt caatatggtg       600
     atctaccaag aaccgacgaa agaatcagtc aaaatatcca aatcagtttg ttgtacatac       660
     caagagctgt atctctgtac ccaataaaaa ttggacacac gttatatgaa attttaactg       720
     caaatcgtct ttattaccat cttctaaaat atttgctatt tttcctgaaa catgctgtag       780
     ttaacagatg aaatatttgt ttttggtgag cattatttga agctttatca aagtgaaagg       840
     tctatgtata gacacctgag cttgttcatc atatacatag gcgcctcaaa ccgcaggggc       900
     tggaagtatg taatcgcatt ttataatgag gacgttaaca catgtgagcg acgtagttac       960
     gcatgaactg cacgaaaaca attaaataca gtttcacagt ggcagtctaa aacacaaata      1020
     aatgttttaa tcatcacaat atatcataca gtttcgaaaa gtgatgttaa cgcggcgatt      1080
     catttgctgt aagttgacaa caaacgaagt agacgcgtga agcagacgac tcaacaaatg      1140
     cgtaccgttt gaacgcttct ttgtagttcg acggtctatc gcaaggggcg ctgcagctga      1200
     caacgacttc cttgtgcgtg ttgcacgtct cgtatagaaa gggct                      1245
//
ID   DNA3-6_AP   repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-6_AP.
XX
NM   DNA3-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-136
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1947-1947 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 136 BP; 38 A; 33 C; 30 G; 34 T; 1 other;
     aagcctcgtt cacacggcga cagttgcatg acaccagtgt cgcgatattc aacganttag        60
     atatacggca ctaggtgtca cgacacacaa tatcattagt gtcatactca ttagtgtcac       120
     cgtgtgaacg aggctt                                                       136
//
ID   DNA3-6_BTa  repbase;    DNA;    INV; 4533 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4533
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 915-915 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 4533 BP; 1296 A; 989 C; 907 G; 1341 T; 0 other;
     tagtccaggt tcttatgttc aaaaaaagct tcccgtggaa cggtaagtga agcaagtgtg        60
     gaaaatatct taatctcttc atttcgatgc gtaaaaaaag aatttcgatg ttgtcaagct       120
     caattttgcg tctaaccccc caaaatcaag atggcggcca aaatgggggc tcggggggtg       180
     aaaattatgg aatttgattt tgatgtcatg attggggtca attcttatgt aattttggtc       240
     gtagaatccg aatttgaggt ccaaaatact ctccgaccca aagggatgcc ccaaatccaa       300
     gatggccgcc aaaatctcca agatagggtc aaaactgcga tacgtatgta aaagtgccaa       360
     gtagggtgtc cttggtaggg ttctttgggt cggagatttc acctatgatg tcaaaaactt       420
     accacggatc cattgaagcc caaaaaaatc aaaatggcgg ccaaaagggc tgccgttgcg       480
     gggtgaaata ttttgttgag gcaaatatcg tcgaatgagg tgtcactgta taggtttttt       540
     gggtcgtaga ttccaaaaat gaggtccaaa taacaaaata agctgataga agttctccaa       600
     aagccaaaat ggcggccata atggctgccg cccaggcatt gaacgcgttt gaacagtagg       660
     gtgtcccatt ttggacgtta aaaaaaaaaa aattgcgaaa tccaacagag atacctgcca       720
     aaaagttgtc tcatagttag aaaaaaaagc acaaaaaaat ctcagggtcg tagctaaagt       780
     ttgagtggtc ccgcaaggta cttaagatgt ttcaccgatt cctcatcttg gcaatcttgg       840
     cgatcttgca gatttttttt cggcaaatgc aatcgaggta aaaagtcgca aatgcggata       900
     atgagacttc tgatactata ttttaagaga aaaataacgg tttggaccca cgaggatcag       960
     aatccctcgt tcttagctct caaaatgcta aaatcagcga ttttagcatt ttgtagtcaa      1020
     accgctgctc gaccgtcgct cgacttaaat gtcgcggcat ttgacgcgct gtttcacaat      1080
     gatcccattg taggagtaaa aagtccttca agtatgttca ttagaggtgt aagagggtca      1140
     ctttggccaa tttttgttgc ttttaaacat tgagctcatt gtttaaaatg ttttttgttt      1200
     tttgttttgt taatataatt ttcctgtttt tcatcatttt ttaaaatggt ttaaaaaggg      1260
     cgactcatct tacaccaaaa ttgaactcct ttggcgaaca atatacgtag atggtcaaat      1320
     acttcctcca aaacagtttt tggattcaaa gcctcccaaa aaagccgatg ttgccatatt      1380
     ttatccccgg aaaacacaaa aaaccgagta cctatttcag tatttggagg ctgttcctca      1440
     ccgagctcat tgagcaaatt tcagcaaacc ttgaattttc atacgttatg accagattac      1500
     tagtgattat gtacatgtgt ttatctatac agcctcccac cgcggcgcga cgttgccaca      1560
     taccatcgat aaaattcgat ggaaatccgc gtttccttag atttgagcca ttttttcgga      1620
     tattgcacat ggaatacata tgggtcattc cacgtcaacg caaccaagct caaaactcga      1680
     ccccctccga tttggttgaa aattggtgta cggggtcttt atatcatatt aagaaaccaa      1740
     ttttgaaggg ttttcccatc tgacgccccg ttcgcgagat atcgaccccc aaagatgggg      1800
     tgaattttag cggtattcaa aacagcccgt tttagcgatt ctcattttct cgactctcct      1860
     ctctttgact ctccatagcg agactcttta tcaatccatc atgctttgaa agagtatttc      1920
     tagaccactt tttcatgtag attctgaata tgccatcgaa attgagctaa gaattattta      1980
     aatggccgta attcaggctt ttttaaaatt tactatttct ttgcattcaa tgttcaaact      2040
     gatccaaaat acagtccctc cgattttgtg tgagtacttc atagaacagt gcatagagcg      2100
     cgctaaatat gctcgcataa gtagagtaac atcctcgaat tcttttttag ggggtccggt      2160
     ccttcccgca ttgcagggtc cagccctgcc ttcttcagga cccagtccta ccttctccag      2220
     ggcccagccc tatgtggtta gtgctcggcc ccgcctcagg taggactagg ccctgaggca      2280
     ggtagggctg aaccttaact tcagcatggg cctgcccctt cgatgtttag gtgaagcaat      2340
     tttacctacc ccgggtgtag ggccggccct gccccgcagg tcccaaccct aaactcgttt      2400
     tttccgtgga gatagagggg gatcatacct tgtgccaata tctattattt taagaccctg      2460
     cgcttattga cgacccattt cctacgattt ctagtcatga tgtttgtgca cgaggatgcg      2520
     actttcaaac attgaccgtg atctgaggac caaaaagaaa cagtgccaca tttcaaaaac      2580
     acgggttctc aatgctgaat ttttgcccac ccttaaacct agccctcccc cccacccccg      2640
     tccttttgga cgggtaccga ttgctaagaa tgctgcctcg caatttcccc atttttttct      2700
     caaaccgcaa agtggaaatt cctctaccct cccaaagtcc ttcaaggagt ttgcactccc      2760
     taagatttgg agacatcaca aacatcatgc ttagaattcg taagaaatgg gtcgtcaata      2820
     agcgcaggat cttaaaataa tgattattgc cacaaggtat gatccccttc catctctgaa      2880
     tactgcattt taagttttac ataagtattc catgtgcaat atccgaaaaa atggctcaaa      2940
     tctaaggaaa cgcggatttc catcgaattt tatcgatggt atgtggcaac gtcgcgccgc      3000
     ggtgggaggc tgtatagata aacacatgta cataatcact agtaatctgg tcataacgta      3060
     tgaaaattca aggtttgctg aaatttgctc aatgagctcg gtgaggaaca gcctccaaat      3120
     actgaaatag gtactcggtt ttttgtgttt tccggggata aaatatggca acatcggctt      3180
     ttttgggagg ctttgaatcc aaaaactgtt ttggaggaag tatttgacca tctacgtata      3240
     ttgttcgcca aaggagttca attttggtgt aagatgagtc gcccttttta aaccatttta      3300
     aaaaatgatg aaaaacagga aaattatatt aacaaaacaa aaaacaaaaa acattttaaa      3360
     caatgagctc aatgtttaaa agcaacaaaa attggccaaa gtgaccctct tacacctcta      3420
     atgaacatac ttgaaggact ttttactcct acaatgggat cattgtgaaa cagcgcgtca      3480
     aatgccgcga catttaagtc gagcgacggt cgagcagcgg tttgactaca aaatgctaaa      3540
     atcgctgatt ttagcatttt gagagctaag aacgagggat tctgatcctc gtgggtccaa      3600
     accgttattt ttctcttaaa atatagtatc agaagtctca ttatccgcat ttgcgacttt      3660
     ttacctcgat tgcatttgcc gaaaaaaaat ctgcaagatc gccaagattg ccaagatgag      3720
     gaatcggtga aacatcttaa gtaccttgcg ggaccactca aactttagct acgaccctga      3780
     gatttttttg tgcttttttt tctaactatg agacaacttt ttggcaggta tctctgttgg      3840
     atttcgcaat tttttttttt gtaacgtcca aaatgggaca ccctactgtt caaacgcgtt      3900
     caatgcctgg gcggcagcca ttatggccgc cattttggct tttggagaac ttctatcagc      3960
     ttattttgtt atttggacct catttttgga atctacgacc caaaaaacct atacagtgac      4020
     acctcattcg acgatatttg cctcaacaaa atatttcacc ccgcaacggc agcccttttg      4080
     gccgccattt tgattttttt gggcttcaat ggatccgtgg taagtttttg acatcatagg      4140
     tgaaatctcc gacccaaaga accctaccaa ggacacccta cttggcactt ttacatacgt      4200
     atcgcagttt tgaccctatc ttggagattt tggcggccat cttggatttg gggcatccct      4260
     ttgggtcgga gagtattttg gacctcaaat tcggattcta cgaccaaaat tacataagaa      4320
     ttgaccccaa tcatgacatc aaaatcaaat tccataattt tcaccccccg agcccccatt      4380
     ttggccgcca tcttgatttt ggggggttag acgcaaaatt gagcttgaca acatcgaaat      4440
     tcttttttta cgcatcgaaa tgaagagatt aagatatttt ccacacttgc ttcacttacc      4500
     gttccacggg agtcgacata agaacctgga cta                                   4533
//
ID   DNA3-6_LMi  repbase;    DNA;    INV; 1390 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1390
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2889-2889 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1390 BP; 381 A; 285 C; 316 G; 408 T; 0 other;
     agccgtcggc acacggagcg tgtatctgaa cgagtgtggc caacgtggcg agtttctgac        60
     gtcacaacgt gcgaaccgca cgttggcgag gctttcccaa cgtgtcgggc agtatcaagc       120
     atgccagata ttctcaacgt gcgtctgaac gatcaccaat aaggtgggag aacgccaccg       180
     acgtcacacc acgtggctat ccggggaggg ggggcagctc ttttcggtag agagatgaag       240
     acgccatatt ggccgtcgta tttcatgggt tttatgtata taacttaggt cttatgaatg       300
     tatgacattt caaagcaagt aaaagtaact gagtaaattg agaatctctc gaaaaccggt       360
     cattagaggt actatttgtt ggaataaatg actggaaacg tcttatatgt ggttaaaaaa       420
     tttccgtatt acagtaatct gccgtttcaa ggcaaggcgg actgaagatc tatcaacacg       480
     aattgttctt tacatcattt gttgtaatta catgtcagca accgacatat ctaccagtag       540
     tgtatacaac acgtctaata ccttcgttga tgatacatga tacgttagtg gccgtagcgt       600
     aggcagcaaa gtcgtggact gtgaattgaa gaggttgcgg tgctggttca aggctcctca       660
     gaagcaaata ttttttcttc ttttattcgg gttttctgat agactcaaag actttcctat       720
     aaatttcata gaagtatact gcataatatt cgatgctatg taaacataag tgcgcatcct       780
     ctgaggagtg agtttgttgg attcgtttta tgaacaggac agtttgcacc ttacttagag       840
     taaaatacgc actttattgt ttcacgtatt gcattttaca cgttcttaac attcttctac       900
     tgaatagtaa cattgaccgt ggaagaatga cctttaagtt ttactaaaaa gcgagactgt       960
     tgcaataatg tttgcctcat gtgaaggcct tttctaattt tatatcgcac agtttgtcat      1020
     gaaactttta taattcgctg cacttattga cataacatgc aacttttata agagtcttat      1080
     gttcatagat attttgttgt tacttatgta ggcctatatc acagaacata acgaacatat      1140
     gcacaagcgc ggaaataagc gatttaatag aggtaaagca ggaattccac tcttttgatt      1200
     tcgtaaacag tgtgattcca gaacctgatg ccgccgacaa ctgtcgctgg agcgcgctgc      1260
     ggtcgcgtgt agctcgttga ggcacacgtc tcgtatgcac aagtcgcgcc gtctccgagc      1320
     gttcagccgc acgttggact cggcacgttg accacacacg ttcagacaca cgctccgtgt      1380
     gccgacggct                                                             1390
//
ID   DNA3-7_AP   repbase;    DNA;    INV; 401 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-7_AP.
XX
NM   DNA3-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-401
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1948-1948 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 401 BP; 137 A; 75 C; 80 G; 109 T; 0 other;
     atagcgtttt cgatttgaca aaatagtgtg cactgaaatt ccactggcac agagcaagtg        60
     ttgcatgaaa attgcactag tttcttataa atcgaataca tttatgtgta atattatgga       120
     aaacaaaata tgttgacatg gaaagaaata caattcttaa tagggccgcc gtattttgtt       180
     ccccgttatc gagaaaaacg gttcatattt ataaaatgca ctcattgcac tgacaaaatc       240
     ggcggtgcag aaaatgcgca ctgagtgcgc acgagtgttg tcagtgcaat taaatcgaat       300
     acaaaacacc gcaccagttc actgaatatt ggtcaaatcg aatacgtttt tgcactcagt       360
     gcgcaccgag tgcaaaaagt gcgtcaaatc gaaaacgcta t                           401
//
ID   DNA3-7_BTa  repbase;    DNA;    INV; 2855 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2855
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 916-916 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 2855 BP; 862 A; 562 C; 578 G; 853 T; 0 other;
     tagtggggcc gataagcata acaatcgtgc acttctggaa gaaagcatga aaatttcagg        60
     gattcatctc taccctatag acattcgatt cagacataga ccccaaaaat ctgagccccc       120
     tgggggggca ggggggcccc caaattttga attttgaata actactgaac ggctaatgtt       180
     agcgtaattt tttttaagca ggacgatagg aaattttatc aggaacaaaa atggttctta       240
     tgaatttttc tgtgggatcg atatttaagg cgtgaaacgg gaaaaaccat cgggggacgg       300
     ggagccggcc gttctgaggc agatccgcgc gctgcgctgt ttgcccggga cgcgcgcggc       360
     ggcgcagtac ggtgttaccg acgaaacagc cgcttgtctt ggtttaatct caacgatgcg       420
     cagttttaaa agtattgtga atatatcgta ctacctataa agccttaaaa tagggcttaa       480
     cttatgcagg taatatatgt atacaagcga gcgcacggca acagaaagag aaggggttaa       540
     gtgctggagt tccgaattgt tttgttgtat gggtttgtca agttttatta cagcatccga       600
     gataactgca tcagacatca gttgaacgga ataaaatctg aggcacagtt gtctcgggaa       660
     gggggggggg gctaaaagtc acaaatctta tttgtgtacc acgatgacct gaaaaatgat       720
     tttaaagtgt ttttctttct ctttctctcg gtgctgcgac atcaggatgg tatctaaata       780
     tgcttactta agacagggag cctaattttg taaacaatga gcatacataa aaacatgctt       840
     attctcctct ctttcaggaa cattttggta catcattgct acgtataggc atttttttaa       900
     gaggaccaaa accaccttca aaacttgctc caaaaaaacg gcaaaagaat cttgagaaag       960
     cttgataggg ataaatgacc cccaaaaaac ctttgttgga ctgcttcttg tacagtacaa      1020
     agaatattat taagtaataa ctagccgccg tatccgctaa tctgtcaaaa cggtccattt      1080
     gagtgatagg aagtcgcgcc taagtactgg gaacctatcc tgctcttatg tcagcgcatc      1140
     ataggtacga tattccgcaa tctcggtaat tttgcaactg attactgatt actgattttg      1200
     actgattttt tgatattttg acgataaatt aaccttttga taatctctaa agctaattcg      1260
     atcagtgtta taatgtacga taaagtttaa ggtgtacgtt ttgtgcattg catattttgc      1320
     aagtcccgtt tcttgaaaat tgtctccgac atacttacct agaactcttc catgagctcc      1380
     atacaaatca aaaatcggta cgagatttgc gggttgaaaa agaagaaatg caatgaattt      1440
     cttcctgagg cctggtcctt ctcagaggtt ctttaaagaa tcagaacctg catgataaat      1500
     aaatttcctc ctatattaat atttttttca atacaaatgt taccaactcc actctaaatt      1560
     ccatacaaca aaatgtaaga taatatacat ggattttttt tactgctcat tccattttct      1620
     atgtgtcgtg gtaagtacca ataatatctt caaggatgac tcgataaaaa gaggcgatag      1680
     tattcagata tcttcttttt tatcatttat ttaatgtatt gttctatttt tttttaaata      1740
     tgcatatttg ttgaataact gaaaaaatgg ggagttcatg aaaatgaaaa cttctattga      1800
     ctggctggag ggaaaaagag gagaaaagaa cattgtcgga atgttccgta tgaatcagta      1860
     cctatgcaat tgcgagaaac caatgaacat gaacgaaaaa cgatatttcc ttcattttga      1920
     aggaaatctg gtaaccttat agtggcgaag ggactgtgga gcccccctcc cctccctcca      1980
     cactcctcaa ttaatgtctc taccaagttt tgcaaaattc atggttatgt aagcagctca      2040
     ttgtctcatt cgccgaaagt aacatgaaaa ataagctaaa aataagttac gaaggatccg      2100
     ccatttccaa tagtcatgaa aaagtgggtc aaaatcgtat taaaacttgt tatttcgctc      2160
     taatatctta aaaaaatgta atcctgtaca aaacttacgt gaggaaaggg taatttactc      2220
     tgtaatgagg tcggaaaagc tctgcattca gagaaaacaa gacgcgtgat gcgcgatgac      2280
     cgatccctcc tattgactcg gcgctctcac attggagtat ttcgcttttg cttgttttta      2340
     tgtattacta ataaaaagta gagcttatat tactgaggaa aagtatttag gcagtacggt      2400
     aaattcatta ttatttttaa aactgcgcat cgttgagatt aaaccaagac aagcggctgt      2460
     ttcgtcggta acaccgtact gcgccgccgc gcgcgtcccg ggcaaacagc gcagcgcgcg      2520
     gatctgcctc agaacggccg gctccccgtc ccccgatggt ttttcccgtt tcacgcctta      2580
     aatatcgatc ccacagaaaa attcataaga accatttttg ttcctgataa aatttcctat      2640
     cgtcctgctt aaaaaaaatt acgctaacat tagccgttca gtagttattc aaaattcaaa      2700
     atttgggggc ccccctgccc ccccaggggg ctcagatttt tggggtctat gtctgaatcg      2760
     aatgtctata gggtagagat gaatccctga aattttcatg ctttcttcca gaagtgcacg      2820
     attcttatga tattttccac ttatcggccc cacta                                 2855
//
ID   DNA3-7_LMi  repbase;    DNA;    INV; 2195 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2195
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2890-2890 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 2195 BP; 638 A; 470 C; 436 G; 651 T; 0 other;
     ggccgtgttc acactgccgg ccgggccgag ccgagccggg agattaaaca cattgttttt        60
     aatgcgctgt tcacactgcc ggccgggccg agaggactcc gcttcagccg gctcacgccg       120
     agccgacgac attcggaatg tttaatattt ccggcgcgag ccgattgggc tacggtgttg       180
     cttctgcagc acaagtatct cacgtctccg cctgtttcca atacaaattc tctgcttata       240
     gcttcttttt ttaaataaca cttgtgaaaa tatgttttgt ttattttttc ttttattact       300
     attaattctg taaaatgaat aaaaaatatt aattagctgt tctcataagg aaaaactctc       360
     ctaaatgtca gtcgaaattc atgggacgag tccattacca cctgtttctt atgtgcttaa       420
     aactcgacga gtcactacag tgtgagaaca atagtattaa aataacaaaa tcaattaact       480
     gttagctggc tcgaagtaga cggcaatgaa caagttttgg tcacccccgt gtttccttcg       540
     atcttctgct gacagtgggt ggggattcct tgttgctggg gacaagccca ccaagaagga       600
     aaaaaaagtg acacacgctt ctatccttta ctgacctgtc ctgcagtgtc tgaggctaaa       660
     ctaaatcagc gtatttttct ttcagttaaa gtataaaact cgaaatgaaa gtaccataat       720
     ccagacaaag aaaattgtca tcagatgatt cagcaaaatg ttcatgaaac ttagttcccc       780
     tcagacaggt tccttaaaaa ataaaaataa atatctgaga gctgtgtaga gttctttcaa       840
     cgtggaggtg ggctgaaata tagtacagca tgacgcatat aaaaccggta cacctcacgt       900
     acgcccgtag ccaccacttg cagcatttct tataaggagg taactacgtg tttttaatgt       960
     cactgttccg tattgttttt tacttaattc attcttaatt taatctcaga cgtgagggta      1020
     ccgcttttat gtgggacacg ctgtatacaa ttattttcac gttgtggtac aacatttttc      1080
     gagagctaca aaagcgaaaa taaaaaaggt atatattttg tattaggagt agatgcatct      1140
     ataaatataa gtgtattttt tgagcttctt ttatcatctc caactagaaa gccattaagt      1200
     gtaatgtcag aaaattttat ttcagtccat caacagtaaa gtcgcagttt acattaattt      1260
     tttcttctct tctagttcca aacacgaaat atatattcca ttaattgtct ggtgtggaca      1320
     aaaaaccagt tgtatgcctc tcataaagtc aagtatgacc tgatgtaaaa ccgtagcaga      1380
     tcgttgtcca ttgtaatcgg tcgccaccca agaaaaatta cttcatactt gttttctggt      1440
     tatggatcat taacacatca cgagggacct acacacgtgg ccagcaattc aaatttttcg      1500
     gcactgcagt gcttcacgct acgctcaaca gccgccgagt tcgtaggctt gcgatcgcgg      1560
     catgacgccg ctcagataac tcgcaattac ttgtgaaagg aggtagatat cggtgcgact      1620
     actatttcaa aaacttttct gtacttttag ctccatttca ctcgctgtaa tgtatggtct      1680
     aaaatgcata gaacagtaag ctgcccgcta tcgaactttt tcaatacacg atttgtaaat      1740
     caagtgcgca tacttgacaa aaagcatcat ttgaaaacga ctgttacgaa tttcgaaaag      1800
     gtgaatgttt tattcgaaag ctaagatgtt gtactaccat gtgtccaaaa atcagatttt      1860
     ttaaccgcat actttcatca aaatcgagtg aggagcgtta cgaaactaaa aactcacgcg      1920
     gaatgaaaag tagacttttt attttttcac aggcaaggca aagcttttaa ggaaaaaata      1980
     agttgataaa acgatgtggc gtggtcttat ataccgtcaa aattttttac aacttgaaaa      2040
     tcggaaaagt tgattttccc cctctttttc gtctcggctc ggcccggcgc gcagtgtgaa      2100
     cacccatgcc gtcggcgtgc gccgactagg cgccagccgg ctcggcacat cccggctcgg      2160
     ctcggctcgg cccggccggc agtgtgaacg caccc                                 2195
//
ID   DNA3-8_AP   repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-8_AP.
XX
NM   DNA3-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-350
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1949-1949 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 350 BP; 94 A; 80 C; 68 G; 108 T; 0 other;
     gaggaaattc aggagcggca aacgttgcaa acgtttgata acggagaaat tcggaacgtc        60
     cggttgctaa acgaagctgt aaacgtttgc aaacattgca aacgccatgt tccagcgttt       120
     ggtctgtttc gttctagtaa ccagaaccgt ggttgttttt gtttatacta ttgccgttat       180
     cgttatcaca attcacgact tatcacgatt aatttttttt tatgtcttac accacgacca       240
     cggttaaaca aaataccgca ctaaaccaag cgctcgcgaa tttctacgtt ttcaacgttt       300
     caaacgttgg cgttcgttct gcaaaacgtt tgccgctcca gaatttcctc                  350
//
ID   DNA3-8_BTa  repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-274
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 917-917 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 3-bp long.
XX
SQ   Sequence 274 BP; 82 A; 60 C; 52 G; 80 T; 0 other;
     agccctggat agacgatcaa attccgaacc aattccgatc aaagtagaca tgctgatgac        60
     tgatggtcac catctaccat caaattttga cgggccgcac tattttgttc aaagtaagat       120
     cagaatggag tgccaccatt catcatttcc tgcctcagga aacatttctg ccaagttttc       180
     attttaaaac taagcaaatt aatgagttta agactgatga ctcccgacac tttgatggta       240
     attggttcgg gaatttgatc gtctatcgag acct                                   274
//
ID   DNA3-8_LMi  repbase;    DNA;    INV; 1003 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.11, Created)
DT   12-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1003
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2970-2970 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 3-bp long. C[TNA]G is the
CC   target.
XX
SQ   Sequence 1003 BP; 291 A; 185 C; 190 G; 337 T; 0 other;
     cacccaaacc ttcagatgtc agacactcag atccacacca aacgttgtat atcgatagag        60
     tatcaaccga aacatctata taattcctga tttttgctgc cgtccagtag aacgtgcgta       120
     aattataata ataagtaaca tcaaacctac ggattagagg aaaagcgtgt ctgtgagggg       180
     caatcaagcc acgccaccgt gggttagttg gtagagcgtt agcttgtggt gcagaaggtc       240
     ctgggttcaa gccccacctc gctttaattt tttttcattg tttaaactac agtacgttgg       300
     aaattgttaa aaggggcaac gtgttcctca tatgtaaaag gactgtttcg attttgtagc       360
     aatgtgttat tggcagttta ctcttgcttc gttttatttg aaagtaggaa acctgtacag       420
     tgttattact ttaattacgc ttattgtttt taacattact atttttgtta ttgttattac       480
     tattattact attaatacag ctgtatgtgt gatgcagttg tttttttttt tattattcat       540
     atgttctgat tatgttcgtt tattctgtga aactacgaat aaaccctaca gattagctac       600
     tttcaaataa aacgaagcaa gagtaaactg ccaataacac attgctacaa aatggaaaca       660
     gtccttttac atatgaggaa cacgttgccc cttttaacaa tttccaacgt actgtagttt       720
     aaacaatgaa aaaatttaag gcctaggtgg ggtttgaacc caggaccctc tgcacgacaa       780
     tctaatgctc tacttactaa cccacggaag cgtgacgtga ttatgcctca cagatacgct       840
     tttgctctat tccgtaggtt agttgttact tattattata gtttatacac gttctactgg       900
     acgacagcac aaatcacgaa ttatatagaa gtttcggttg atactctatc gatatacaac       960
     gtttggtacg gatctgagtg tctgacatct gaaggtttgg gtg                        1003
//
ID   DNA3-9_AP   repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-9_AP.
XX
NM   DNA3-9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-203
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1950-1950 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   3 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 203 BP; 43 A; 43 C; 51 G; 66 T; 0 other;
     aaggcgggat cccacgactc gtgtatttga cgaatatttg gtattcgtgg atactcgccg        60
     agtaatggga atggagtact tgtacgaata ttcggtattc gttattcgtt attcgccacc       120
     ttcccgtcga ttgtcggtaa cttgccgatt attcgtgtat tcgtggatat tcgtcaaata       180
     cacgagtcgt gggatcccgc ctt                                               203
//
ID   DNA3-9_BTa  repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-120
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 918-918 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 3-bp long,
CC   CAG-specific.
XX
SQ   Sequence 120 BP; 34 A; 32 C; 21 G; 32 T; 1 other;
     cggcccgatt attgaaacta tgtcagcccg acacgacaag acatagccct atcttaacca        60
     tgcaatatat cgcaattcga tgtcttatcg ggctgsttta aactttcaat aatcggcccg       120
//
ID   DNA3-9_LMi  repbase;    DNA;    INV; 1343 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1343
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2891-2891 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1343 BP; 431 A; 243 C; 282 G; 387 T; 0 other;
     agggtatatt acacggagcg aatttggtcg ctagtcgctg gcgtatttgg acgcagctgc        60
     taaattcgct ccgtgtaaac agggacagcg aacaaagtcg ctgctccgaa acgcgagcgt       120
     ctaaagttga agggtgggct actttagacg ctggtcgctg gcgtttttgg tcgctggcgt       180
     ttttggtcgc cccgtgtcat atacgggagc gtctaaagta gccaccagtc gagtcaaaat       240
     gtcgaaggaa attgtaaatg ctggcgttgt gtttctcgca acagttttaa aagaacaatt       300
     aatgaaccaa aagcaaaacg gaaaagtaga aaagaataaa agaaaatgga ttagaaggtg       360
     gattgcgagg agggataaat atggtgcttc tgcaaatctt ttgggtgaat tatcgtgtga       420
     aggtccttct gcctacagaa atataatgag gatcacataa gaaaattttg atagattact       480
     gtaaatggta gaggataaaa taaggaaaca gaataccatc atgaggatgg cgatctcgcc       540
     aagaataaaa tttaaataat cgttattttt aatgtcccat aatactggaa aacttcgata       600
     aattttcaga aatttgatta caattccact tcatattttg tttggtggga cacagaactt       660
     ttaatatctt tatttacgtc aatgatcaca aaatttctcg tcgttttgac gaccggtttc       720
     ggtcaggatg accattttca agtctacagc aaatcagaaa cagaaggata catcaagtat       780
     tagactacct tagaaaacaa ataatgcatt acagtcatca atacatgtaa tatagccata       840
     tggcatcatc acagcataag tgtatcttca ttaaggaatg taacaacagg tatgatgtat       900
     aatattttaa cacgtttttt atattgatga ctgtaatgcc ttatttatgt tttataaggt       960
     accgtagtct attactaaat ttgtcctgtt tccgatttgc tgtagacttg aaaatggtca      1020
     tcactgaccg aaaccggtcg tcaaaacgac gagaaatttt gtgatcgacg taaataaaga      1080
     tattaaaagt aattacaaaa tggatcactg atataaattc gcgaccatgt cgcaccttgg      1140
     gaaacagaac tgtttggtat cacctaacct ccaaaacaat gtatcatatg ctacgtcgtg      1200
     tttcaattgt ttttacgaag acgctagcgt ctgaagtcgc tgcgtgtcat tgcgtcagcg      1260
     tattcattcg ctattcgccc atacgccgag cgacaacaga cgccagcgac tagcgaccaa      1320
     atacgctccg tgtaatatac cct                                              1343
//
ID   DNA3-N1_SIn repbase;    DNA;    INV; 2129 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   07-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA3-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2129
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 384-384 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TSDs are 3-bp long. ~80bp TIR. The
CC   sequence 431-663 is similar to EnSpm-N1_SIn.
XX
SQ   Sequence 2129 BP; 734 A; 277 C; 300 G; 818 T; 0 other;
     cccagccaga aatgattagt cgaatcgacg tcgattcgac gtcgatgcgt cgataaatgg        60
     tcgatggtcg aaaactagtc gatattttta tcattttcta ctttgtcata aaaattgttt       120
     attgagtaat tgcaaatatt tttgtaaaat ttctattgac ttttattcaa ttttacgtag       180
     atcaacataa attggaaggc gcagtatata ttttactttt ttattacatt gtttttatgc       240
     actaaaaagt tgagatatcg gaatgcgata tgtgttcttt tgcatacaca attaaatcaa       300
     catataacct gtatataatc ttgatctgca aattgtgtag agatgcatat atcatttgca       360
     tgatttaaca actttttaat agcaataaat ggatcttaaa aattgttaca tctgttataa       420
     aagaatgaca ctcgggaaaa atttttttta tatataatca ttatataatt atgtacactt       480
     atatgtaaaa tatgtccgta tatataatta tattatatgt aattatatac aattttatat       540
     aattatatgt atatttattt acatataaat atacataaca caaatataaa ttacatgtaa       600
     atatatataa tcatatatat ttatgtttgg acatatttta tatataaaat attttttccc       660
     gggcatttac aatgaatata tcactaagct gcactaacat ttttcataca catgtatatt       720
     tataataatt ttcatatctt ataacattta taattattat aagaattcat catatttgaa       780
     atttttctaa aggaattttt aaaaacctta aatattgtca aattttataa gctttctatg       840
     aaaatgtaaa atgagaaatg tagaaaaaag atttttttat tattttttta ttattatatt       900
     attatattta ttattattaa atatattccc gaaatgcgcc cacattgatc attatcgtgc       960
     aaacaaggtt gataaattac gactattact attatcgaac ggcagtgtac ggtaatataa      1020
     gtatgcatca cttacgctac gcttttagac ttggcgcgaa ttgcaattgt gtctcttgaa      1080
     tggttgcgtc ttacagttga gtgagcgctc actgttattg gtgtattctt caagagctaa      1140
     aggtctgttt gaatatttta ctatgttgat ttgattttat gttttaattg tgaaatagtt      1200
     tgttctagtt aaataatgtt tttttttatt tacattatta tattaggtac attatttttc      1260
     acaaatgaaa gtaaaagcca aagaagaatt taaagtgaat gatagtgaag tattgtattc      1320
     agttatggct gcagctatta gtaattctct tgcatgtaaa tacaattttc gaggcgatgg      1380
     caatcaaaag agaccttttt gcaaattact gttgtgggaa gtgattatag gtgaatacat      1440
     attactttat aaattttatt tgtatttttt ataatagtag gaaaatactt tgccttcaaa      1500
     tatttcttat ttgtgtctag taattttaca caaaacattt tatttctagg cgcaattcat      1560
     aacaagagac ctaatgtatt tgttacggat ttatcattat acataggaca atggttaaag      1620
     aatgctctat atcaaaaaca agatgatgaa agttttggaa gacgtgataa aaagttcaaa      1680
     gaaacagata agcatttcta attatatttt gtttggcaaa tacacatatg catttatatt      1740
     ttcactcaac attttattca catattaaag taatatatta cagtaataaa tagcatttcg      1800
     atattactca agttcacgtt aatattacct gttataatct catctctaga tattcccagt      1860
     gagaaatgat gacaaaatcg acgtcaattc gacatcgatt cgacatcaaa atcatcaaaa      1920
     tgatattatt tcgatgtcga tttgataggt catttctcgc tggaaattag tattaattcg      1980
     acatcaaatc gacatcaaat cgacttgtcg atgactggtc gaaatttaag cccattttta      2040
     agtcgaatcg actacacatt tcgaccgtcg atcgaccagt gttatcgacg tcgaatcgac      2100
     gtcgattcga ctaatcattt ctggctggg                                        2129
//
ID   DNA4-10_AP  repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   31-AUG-2009 (Rel. 14.09, Created)
DT   31-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-10_AP.
XX
NM   DNA4-10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-160
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1959-1959 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 160 BP; 42 A; 36 C; 43 G; 39 T; 0 other;
     ctccttttca aaagagaaca taccgctttc gcgcatgtca aatgattcga ttggtgcgtc        60
     gagaaccacg tgatcacgct aacaatggga aattggtggg ggatgcgcgc cgccggacat       120
     aaattggtcg ccgaccggta tgttctcttt tgaaaaagag                             160
//
ID   DNA4-11_AP  repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   31-AUG-2009 (Rel. 14.09, Created)
DT   31-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-11_AP.
XX
NM   DNA4-11_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-277
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1960-1960 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Putative TATA TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 277 BP; 64 A; 68 C; 73 G; 72 T; 0 other;
     ctcggcgcgg aataagaaca tgaccaggcg gcggaccgat tagcgtccgt tacgcgcagc        60
     cgatttctca ttggttcccc aaacatctgt tcacagttat acagcactgt tcaaaatgtg       120
     aaccgcatac actgtgttgt tttataaaca cgtgcacgtc tctgttgaca catgaggcgc       180
     tccatataca aagccggtaa ttgccactat ggtgggcggt gcggtggagg aagttgtttt       240
     gaatgcgcga ctggtcatgt tcttattccg cgccgag                                277
//
ID   DNA4-17B_BTa repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   23-JUL-2018 (Rel. 23.07, Last updated, Version 2)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA-12_BTa;
KW   DNA4-17B_BTa.
XX
NM   DNA-12_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-276
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 656-656 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to the consensus. It is a compound TE coposed of
CC   two DNA4-17_BTa.
XX
SQ   Sequence 276 BP; 78 A; 61 C; 59 G; 78 T; 0 other;
     ggacgtattt ctgccaaacg gaactatgtg cattatgacg tgagccctgt tatgcatata        60
     ttcttatggg tctcagggct catgtcttaa tgcacatagt tccgtttggc agaaatacgt       120
     ccaattatta cgtcggtgcc agttccgatg aattggacgt atttctacca aacggaacta       180
     tgtgcattaa gacatgagcc ctgagaccca taagaataca tgcataacag ggctcacgtc       240
     ataatgcaca tagttccgtt tgacagaaat acgtcc                                 276
//
ID   DNA4-1_AP   repbase;    DNA;    INV; 823 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-1_AP.
XX
NM   DNA4-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-823
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1737-1737 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 823 BP; 307 A; 115 C; 94 G; 302 T; 5 other;
     cagggtgatt ttttaagcat gctcaccctc atttttccct ttaatagtac atattttatt        60
     caaattctga tttttagaat ttttaagtat acctaaaatc taaasaccat attttcaaat       120
     ttctgatatt ttttgtacta cttaaggagt gtcctgtggy gatacaaact tctatttttc       180
     aaatgagaaa ccccctacct ttttttactg caaattattt agcgratgat tttcttgaaa       240
     atgttgatgt atctaaatca aaattgaaaa ttctaatgag tagtttctga gttattaaaa       300
     tgtttatact aagaataata atccttaaaa atggttttta aaaaatataa cctttataag       360
     ttttatgtca taggtattag atgtatgatt tataatttat tatacttgga tyatttttac       420
     aaattattta tattgataga tcaatagtaa ttactaacat tttcaaatcg tctaagcccc       480
     catatctact taacccatta ccatagaaca taatccatag acatattatc cttagtacac       540
     aaagttatat aactcaaaaa ctactcgctt gaattttgat ttagatacat caaaattctc       600
     aaaaaaaaaa ttatctgctt aataattaaa agtaaaaaag gagttcctat ttgaaaaaac       660
     agaagtttgt attgtcacag gatcatcctt aagtggtaca aaaaatctca aggattcgaa       720
     aatatggtct tcaagtgtat ttaaaaattc caaaaatcag aatttraata tatgcataat       780
     ttaagcataa aaatagggtg agcatgctta aaaaatcacc ctg                         823
//
ID   DNA4-1_BTa  repbase;    DNA;    INV; 4293 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4293
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 922-922 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 4-bp long, GTAC
CC   specific.
XX
SQ   Sequence 4293 BP; 1226 A; 876 C; 877 G; 1313 T; 1 other;
     tatcgccgaa tttagtttca cgcagagtct ctggtgacta tttagcgacg gcgcggcgcg        60
     gcgcgttgcc tgataacgct ctcatgaaga cgcactggtt cctctgtgag cgcgtagtca       120
     ctaacacaga cgcacatgaa acacacacag acattttcac tcattcaccg tgagaattca       180
     cgtttttggc tctttggaat gtaaacaaag attcgtaatg acgtatcgcg catcgattcc       240
     cattctcact tgcctcttgt tcttgtgact agagcaagga agaaaggacc tcattccaaa       300
     ttgtccgttt caaccttggc ctgatcttcg aaatattttc aaagttgata gaggatctcc       360
     tcccgagtct aaaacactga cgcattttga aatcggacga tcacggaggg agggggaggg       420
     gagtcaaagt aaaaaaatta aactcgcaat atctcgctaa cgctttgtcg tagaaagatg       480
     atattggtct caaaatgtag agaaaaccac cagctttcag gcgataatta caaaattggt       540
     ccattttgga aatttcatcc attgttgcca cgttgccgaa gttcaaatgt tcagtttttc       600
     acctttttag ctgcgacgtt gaaggaatcg cacaaaaagt aatctaacta ttttttgatg       660
     aaagtagacc gtttaagctt taaaacaagc acaagttcat cctgaggaaa caagttggag       720
     gagagatatg atttttcaaa gtggatgtgg tacacttgga cctggtttgt tccgagtccc       780
     aagatcacca aatgccccca aaccaatcac gaattgcaag gttgtgcatt tttatacccc       840
     attatagcta attcccgaag aaaattatta aaaaagaaca aaatatcgag acatatgaat       900
     gttacaagac tagcctcagc tgactctcgt tgcatcaaca aaaattcatg cctctttttc       960
     aaatcgtttc tgtaggatgg acttaaattt aaaaagctca aatggtacga ttttattagc      1020
     aattcctctt ttttcctctt atttctaccg agcgaaccgt tgaaggtaaa catacatttt      1080
     tttatgatcg aaaactttga tttccctgta tccattgcat attactcatt tatcctgatc      1140
     ttgtcatttt tgacgaatga tttaatctag gagtgaccta taaaggtatc gccccagcta      1200
     aaaattgaaa atttgaacta cggcaacgtg acagcaatgg atgacatttt caaaatggac      1260
     caattttgtc atcattgtct gaaaggtggt ggtttcctct atattttgag actaagatca      1320
     tcgctttacg acaaaccgtt cacgagatat gcgagttgaa atatttatct ttgaaccctt      1380
     ttctctctat ccgtacttgt ttgatttcaa aaatcgtcgg tgttttggac tcggaaagtg      1440
     atcctctatc gcgaaaaatt aaaagcgcga tggcgtgagt cgtgaggcgt gaattcgcaa      1500
     tatgctcttc tctaggctgt tagtcagatc cgcgagaaaa gttaaaaagc gaggccggat      1560
     tacgtttttc ttaccttcga ctgtgttgct cacgtagcct ttaaagcacc actacaagtg      1620
     agacaaacga aaccaacaca ataaggaaat ggagcaaggg aaaggactcg cgttgatcac      1680
     ggcgcagaga tacgactatt cgtgcttgat ggatgtccgt gttgcatctg caaaattgaa      1740
     ggcgcaatgg cccggggcat gaactcgcaa tgctccgcta tgtgctgcca atgaggtgtc      1800
     tctcagattc agggagaaaa gttaaaaaag aggcccaaat aggtccctcc tttcttcgac      1860
     tgtgttgatt tgatactcga ttcttttttg gaatgatttg cagaccaaca tctaaagctc      1920
     gcgtgaaccg gccccatcca atctgcgggg caggttttgt taggaagcct cgcaatttga      1980
     cccggcttca gcatttaagt gttaataaaa atatcattaa aatgactgca ccttcctcgc      2040
     aaaaagtcag tattcaacat tggatccaaa ataggccatt cagtctgtga atttcaataa      2100
     aatttggtta tgctatctca caaagttagg cttcaattgt tcggtcacgt ctgaaaatat      2160
     tctcatttcc aacaaaatta ttgctgaatg gatcttcctg ccgtatatac ctgatgcatt      2220
     taattgattt gttcctatct ctttttttta cttgccttac tgaacacctt gtcctttgct      2280
     agactcaaca ctctttttcc ctctctctct ccttcaaaat ttcaccttgt actaactaga      2340
     ttgcatgttt cattttccaa tcgaggaagc taaaaagatc tttccagctg tcatgtttct      2400
     tgggttcatc attttcagac ttttagtgtt taaaagcagt attttaggtg gccagatctg      2460
     cctcggaatc tctagaaata acggagcttg gatgcgtctg gtagctgtga tttgttctct      2520
     tttttttcgt ttcacaagtc catcggttac tttaacacgc tcaattttaa aaatttttct      2580
     ctgggggtgc atccccccgg gaaatatcat acgacacccc cttaaccggc caagggtcca      2640
     cgctcttaga tgtgagccag tccgtccatg cgaggaacgt ttaattttac gagggaactg      2700
     gtgtccgata gaaatgaata aggtaatttt tggatcgagt aatacaaaag gatacaggtt      2760
     attgcacgtc caacgaatgt ctctcacttt ttctaataac aatttttctc cagtcaaatg      2820
     acataatgcg cttgtaaagc cccaagtgga acgcatcatt ttgtttttcg tccgaaagaa      2880
     cggaaaaatt attttatcta ggtccttaat ggaggacctt ccactaacta tatgtttgct      2940
     gctagatcag agaatggccg tgtttttttt atatatactt ctgaccaata ttttggaaat      3000
     ccgaaggttt atacaaatgc gtatttttgg catctgaata agggtttttt ttgttgcaaa      3060
     ctcgatcttt cggaaaatta gtgggttgtg gaaaatacaa aggtcgattc ggggtcagaa      3120
     gcaaaaaata agatatagta gctcaattat agctatctga ataaaatgat tttctgtcct      3180
     tccggactca aaacaacgga tcagttttat atatgattcg tgggtggata atgccatttt      3240
     gaccggaaaa ctctcatcag aaaaagggag acatgttttt tggacatgcg gtatgcaata      3300
     catgtctggc tagtgtctat gtatccttgg cccctaaatt caagaattac ttcggtttat      3360
     ctcgatcatg catcaatttc cagaaaatca aattttcctt ggaaaattca tttttaaata      3420
     atcccaattt gcctggaaaa tggcagagac agggacaaac cgaggtcata cttggaccca      3480
     gggctgaata ttacacgaga attcgctaat gaagcattca tttttttttc ggtgtatact      3540
     tgtgtaatct ttcatattca acagcggacc agttttgcgt caatttcaaa cttcctgcgc      3600
     gaagaagtat atcctgaatt aagaagtcct ttggaacaag ggtgtgtgct caaaaaggta      3660
     gttccgcgga aatcgcattt gaaagttcag aagtgcatag cgttggtact agccaatatc      3720
     ttcgcacgaa atttaattag tttgaaagaa caagtctttg agagtatact tgcaaaaacg      3780
     gaacattgtg actacattcc cctatgatcc ctacaagata acgtggatcg ttgtgtaaaa      3840
     agggtggggg gggggcacga ctttttaata cactatgtat atttcctgaa actaggaaga      3900
     atccagtttc agaaaacgcg ttctccsgaa aaagggcgga tgcgcgcata cgcctttgtc      3960
     ccaaagaact ccatgtaacc tgccggcacg gcggtgtcta gaagaaaaaa atcagttgca      4020
     cctcatgaaa ttttagctct attttcgagt gaccgcggtg ttgcgctgtc aattatgggt      4080
     ttgcacctat agatgcttgt ctgagggata ttttcttgaa aaagtagcag atttgtcaat      4140
     tgttcatgtg cctccgtttt cctcgttggc atgagatgag ataggtccag tcagcacccg      4200
     atatctccga aacgcgccac gccgcgctgc gcctcgtcgc acagtttaca tttgatttgg      4260
     agcggcctat gcgtgaaact aaattcggcg ata                                   4293
//
ID   DNA4-1_CQ   repbase;    DNA;    INV; 1716 BP.
XX
AC   .
XX
DT   26-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1716
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 71-71 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. ~580 bp TIRs. 4-bp TSDs.
XX
SQ   Sequence 1716 BP; 575 A; 275 C; 288 G; 578 T; 0 other;
     cacggcgtct ttttcagggg ggtagtattt tttgagaaat agcaagaaaa ctgtcatata        60
     catatgaaag tgtggaacat ccccgttcat ttgcggggcg aacgaaaatc tttggtcggg       120
     aaaaatcaaa gttatcctca tttgaagttt ttgaactttt ttcctatggg gccaaatttc       180
     gtctatttca atttagtatt gttataagtc tacatgggca tgatttatgg ttcagatcat       240
     atgatttctt atgggaaatg atgcaaggaa catttttcct gaagcacgca aagtgattga       300
     aaataaggga aaaaagttat aaaggtttta ttgaaaattt gggagatttt ctgataaaat       360
     tgcacacccc tttcccaaaa accacaatgt ttttgatatt cagatcatta tttcgatgaa       420
     ttcttttttg agaaatgttt ctggacccat tgagtatata aatcactaca gaaaagtgta       480
     attggttggg tttaagctca actgtatgtc acatttatga attttggatt tcaccgaatc       540
     aacatatttt tgtgtgtttt ggttataaaa tgtaccgttt acattaaatt ttcacttttt       600
     tttgtgagta catggtccac atgatatgtt ttgtatctaa ttgagacatg cagtgtaaat       660
     acaatcacag ggtttctatt tctatgcctt ttgttaattt gtatttccat ttgggctata       720
     ttatttgtat tgaaactaca gagttgaact tgcaattatt ggtaataaca taaatattgc       780
     gtaaaaatca ttaaaaagtt taaatgtatg taaatctatt aatttaatct caaataattg       840
     agcttaacat actaaacaag tctggcatcc aaatttgaaa caacgaacaa tacaacaatt       900
     aaattgtttt gctaaaaaac acacaaataa ttgatcacag tggcagtgcg tggccgaatg       960
     gttacgctgt ccgctttgta agcggatgat tctgggttcg attcccaacc tgggggtcgt      1020
     taatgtggat ggtttgattt gattttgatt tacaatatta tcacctgacc tcaaaataag      1080
     tacgagatct cttgtgaggt ttaataagac taatacaaat gtgaaaatct aatggaaacg      1140
     gtacatttta taacaaaaac aaacaaaaat atgttgattc ggttgaaatc caaaattcat      1200
     aaaagtggct tacagttgag cataaaccca accaattaca cttttctgta gtgatttata      1260
     tactcaatgg gcccagaaac atttctcaaa aaagaattaa tcaaaataat gatctgaata      1320
     tcaaaaacat tgcggttttt gggaaagagg tgtgcaattt tatcagaaaa tctcccaaat      1380
     ttccaacaaa acctttataa cttttttccc ttattttcaa tcactttgcg tgcttcagga      1440
     aaaatgttcc ttgcatcatt tcccataaga aatcatatga tctgaaccat aaatcatgcc      1500
     catgtagact tataacaata ctaaattgaa atagacgaaa tttggcccca taggaaaaaa      1560
     gttcaaaaac ttcaaatgag gataactttg atttttcccg accaaagatt ttcgttcgcc      1620
     ccgcaaatga acggggatgt tccacacttt catatgtata tgacagtttt cttgctattt      1680
     ctcaaaaaat actacccccc tgaaaaagac gccgtg                                1716
//
ID   DNA4-1_DK   repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.07, Created)
DT   28-SEP-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-337
RA   Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1191-1191 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus. 4bp TSD (TATA).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 337 BP; 113 A; 47 C; 58 G; 119 T; 0 other;
     cccttgcagg gtattataat ttcagtcaga agtttgcaac gcagtgaagg agacgtttcc        60
     gaccctataa agtatatata ttcttgatca gcatcaacag gggaatcttt ctagatatgt       120
     caggaagaaa tcgatttttt ggccattttt gcgaaatttg ataaggggtt acatcattaa       180
     aattagcaaa aatggccaaa aattttgatt tcttaaaatt ttaaatttgg tatgcagttt       240
     ttttaaatta ataaaaacta acacaaaact gctttccgaa tcgaaattaa tgcatttttg       300
     gcttagttat gatatatttt aattgttacc tgcaagg                                337
//
ID   DNA4-1_RPr  repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1298
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3222-3222 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 4-bp long (TTAA).
XX
SQ   Sequence 1298 BP; 371 A; 230 C; 272 G; 425 T; 0 other;
     cccttaacgg tccaatgccg ccatataagc ggcatagcac ttttacttac tgggaccaat        60
     gccgcgtata tggcggcaaa aatctctttt tttttttttt ttagcgcatc aacagctgtg       120
     gttaggggca tccataaatg acgtaacgcc actatggggg gggtagaaaa attgtgacac       180
     tttgtgacaa gagggggtta gggggataga atcagcgtta tgtcacgctt ttttaaatca       240
     ctttttcatt tccttttttt ttgaatagcg cgcgttttgt gtaccatatg attttcgttt       300
     tcatcgactg ggttatcgat atgtcggtat atacaagagc gctactcaaa gactgttgtt       360
     ttgcattggt ttttatggct gcccgtagtg aattcgttga actaaaatta tcgcgattga       420
     ttctaccgtt tgttgacaat aagatcggaa atttatatta taaaatgtca gaaaatcttt       480
     atcaacgttt ttacaaagct gtaagagtag catatccttc aatacaagga aaatatctgc       540
     cgaacaaagt aaatgaaaaa tggaatgaat taaaaaagaa gtcaaaaaat tctgtagatt       600
     tgaaggaaat tacggaaaaa gagattcaaa aattgtctga aattgcagca ggaagtaaga       660
     agaaattaga tttctttttt tagggggggg gaggaaattg tgactcagtg tgacaaaggg       720
     ggcagggggt caaaaaagga gatttttagc gttacgtcat ttatggacgt ccccttatta       780
     gcgcttggag cttttttcag tgcactgccg gcctccggac agtgttctct cgttacagac       840
     aacactgtcc atcaccggac agtgagctgt aagaagctcc taggaagaga gaaatctaag       900
     ggttagcagc tggattcgaa cccgggacct ccgcgtggga atcgagtacg ctaaccacat       960
     agctaatccc tcccctaaaa atctctttat tatttttatt tctgttattg tcgtcatatt      1020
     tacaattagc gcacttctgt acccttctat gaatttactt ccacttgtta tcgatgttcc      1080
     gttatctttt gttgtttttt tgtacatgca cttttgtccc tttgcattta aattcagtct      1140
     tgttttgatt ttgcaagtaa acgaaatttt cactaaaata taaatatttt cttttccata      1200
     catgatttaa aaatgttaag cccgcagttc ctcttcgtat agaaaatagc ttggacctgg      1260
     tgggaagtaa acttgaaata cttccggacc gttaaggg                              1298
//
ID   DNA4-2B_AP  repbase;    DNA;    INV; 783 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-2B_AP.
XX
NM   DNA4-2B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-783
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1738-1738 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD (TATA).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 783 BP; 302 A; 86 C; 84 G; 301 T; 10 other;
     agggtgattc atcaaccgcc ccccattxtt tctttaataa tgaatttatt caaattctga        60
     tttttggaat ttttaaatac ttatgcttaa agaccatatt ttcaaatact tagatttttt       120
     tgtaccattt aagaatattg tctttagcga tacaaaactt ctxtttttca aatgagaacc       180
     tacctttttt actgtaaatt atttagtaxa ttattttttt aatgtttatx tacgtatcta       240
     attcgaaatt cgaacgagta gtttttxagt tatttaaatg taaatactat agataattta       300
     aattacgtaa taatacattt ggaagataat atgagaattt atatxttaaa taatatggta       360
     attcgtattt aataxttttg gaaaaatgtt ctgaataact ataataaata ataattaata       420
     tattaaatat txaatttaat ttatattttt ataaaatcat tattataagg actatactta       480
     attatcctta tagttattax atttaaataa ctcaaaaact actcgttcga atttcgattt       540
     agatacgtca aaattttcga aaaaatxatc cgtttaaata atattataca gtaaaaaaag       600
     gttgatttga aaaacagaag tttgtcacaa tcaccacagg acactccttt aaatggaata       660
     aaaaaatcta aatatttgaa aatacggttt taagtatcta cttaaaaatt ccaaaaatca       720
     gaatttgaat aaatgcatta ttaaaggaaa aaaaggtggt gagcattctt ggtgaatcac       780
     cct                                                                     783
//
ID   DNA4-2_AP   repbase;    DNA;    INV; 769 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-2_AP.
XX
NM   DNA4-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-769
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1739-1739 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD (TATA).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 769 BP; 273 A; 117 C; 106 G; 272 T; 1 other;
     cagggtgatt caccaagcat gctcaccccc attttttcct ttaataatga atttattcaa        60
     attctgattt tagaattttt aaatatactc atagaccata ttttcaaatt cttgaatttt       120
     tttgtactaa ctacttaagg agtgtcctgt ggcgatacaa acttctgttt ttcaaatgag       180
     aacccccttt ttactgtaaa ttatttagtg gataattttt ttgaaaatgt tgatgtaggt       240
     acctaattca aaattcgaat gagtagtttc ttagttatta aaatgtttgt attaaggata       300
     atagtcctta aaaatggttt tacataaata taaaatagac gtaaaactgg atctagtatt       360
     tattatactt gggccatttt tacaaattat taatattgat agattaatat taatgactac       420
     aattttcaaa tcaccatagc ccccatatct tataaaccca ttaccatgga ccttttatcc       480
     ttagaacaca aagttgaata actcaaaaac tacycgtacg aattttgatt ctgatacgtc       540
     aacaatttca gaaaaattat ccactgtata atttacagtt gaaaaggggt gttctcattt       600
     gaaaaacaga agtttgtatc tccacaggac actccttaag tagtacaaaa aaatctcaag       660
     aatttgaaaa tatggtctta aagtatattt aaaaattcca aaaatcagat tttgaataac       720
     tgcattattg aagaaaaaag ggggtgagca tgcttggtga atcaccctg                   769
//
ID   DNA4-2_BTa  repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-257
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 923-923 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 4-bp long, ANNT
CC   specific.
XX
SQ   Sequence 257 BP; 83 A; 46 C; 39 G; 89 T; 0 other;
     ggattgcatt ttgcaaaaag gaaccactag cattgcaatg ttgctaagat tgtgcaactt        60
     cttttgtctt ggaggaaaaa cccgattatc cattaatagt ttctatttta ctcgctaaaa       120
     actgtaaatt taagacaaaa attaccatct aaatttcata gtttttcacg atttccgcaa       180
     ttttattgca aaagatgaag ttgcacaatc ttagcatcat tgcaatgcta gtggttcctt       240
     tttgcaaaat gcaatcc                                                      257
//
ID   DNA4-2_CQ   repbase;    DNA;    INV; 1351 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1351
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 72-72 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. ~640 bp TIRs. 4-bp TSDs.
XX
SQ   Sequence 1351 BP; 435 A; 248 C; 244 G; 424 T; 0 other;
     gggtaattct ccgccaactc acacagcagt tgccccgacc cctcttcgat ttgcgtgaaa        60
     ctttgtccta aggggtaact tttgtccctg atcacgaatc cgaggtccgt tttttgatat       120
     ctcgtgacgg aggggcggta cgaccccttc catttttgaa catgcgaaaa aagaggtgtt       180
     tttcaataat ttgcagcctg aaacggtgat gagatagaaa tttggtgtca aagggacttt       240
     tatgtaaaat tagacgcccg atttgatggc gtactcagaa ttccgaaaaa acgtattttt       300
     catcgaaaaa aacactaaaa aagttttaaa aattctccca ttttccgtta ctcgactgta       360
     aaaaattttg gaacatgtca ttttatggga aatttaatgt acttttcgaa tctacattgt       420
     cccagaaggg tcattttttc atttagaaca aaatttttca ttttaaaatt tcgtgttttt       480
     tctaactttg cagggttatt ttttagagtg taacaatgtt ctacaaagtt gtagagcaga       540
     caattacaaa aattttgata tatatacata aggggtttgc ttataaacat cacgagttat       600
     cgcgatttta cgaaaaaaag ttttgaaaaa gttggtcgtc atcgatcatg gccgttcatg       660
     gtcacccgcg acagacacgg acgacgaaac aaagagaaac gcaaaaagta actttttcaa       720
     aacttttttt cgtaaaatcg cgataactcg tgatgtttat aagcaaaccc cttatgtcta       780
     tatatcaaaa tttttgtaat tgtctgctct acaactttgt agaacattgt tacactctaa       840
     aaaataaccc tgcaaagtta gaaaaaacac gaaattttaa aatgaaaaat tttgttctaa       900
     atgaaaaaat gacccttctg ggacaatgta gattcgaaaa gtacattaaa tttcccataa       960
     aatgacatgt tccaaaattt tttacagtcg agtaacggaa aatgggagaa tttttaaaac      1020
     ttttttagtg tttttttcga tgaaaaatac gttttttcgg aattctgagt acgccatcaa      1080
     atcgggcgtc taattttaca taaaagtccc tttgacacca aatttctatc tcatcaccgt      1140
     ttcaggctgc aaattattga aaaacacctc ttttttcgca tgttcaaaaa tggaaggggt      1200
     cgtaccgccc ctccgtcacg agatatcaaa aaacggacct cggattcgtg atcagggaca      1260
     aaagttaccc cttaggacaa agtttcacgc aaatcgaaga ggggtcgggg caacttttcc      1320
     cgatttcgtg tgagttggta gagaattacc c                                     1351
//
ID   DNA4-2_RPr  repbase;    DNA;    INV; 1022 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1022
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3223-3223 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 1022 BP; 327 A; 186 C; 177 G; 331 T; 1 other;
     cgtcgctacc acgccaaaac cacgaatctg ccaatttggc cattttcacc taaatacaga        60
     tttttgctta gcttttggtc aacttcactc tgccaaagac gcgaatctgc agcaccagtc       120
     gatgttgctg aaatcgtaac tcatattttc acgagtctgt agaaaactac aggatcccca       180
     cgccaattca cgaatatgcc actttcgcga gtttgccata gtgtttcttc aagagtactt       240
     cacgaatcta ccactttcgt gtttttcgca tggtaagatg aactaattgg aaaaaaatcg       300
     tttttttccc tgtagaccgc gctggtcttt agctttaata atgttatgtt tacatcattg       360
     tgttgatgtt gtttttgata acgcttaacc atgagtgaaa gaacacggaa gatactttct       420
     atgtgtgctc cattagtgat agaatctgaa tcagatgaat ctaaagatcc ttttggtgat       480
     gtagatattt tcgaccagga taaaaattat gtaccttcag aagaagacag ttcaagcagt       540
     gatgatggca atcgtgatgc aaatataaaa catgttaacg ttgaaggcat cagattttca       600
     gagggataat ttgccggaac ctgatgcaag tgaagagtcg gaatatgacg actaacaatt       660
     agcgtatagg aactgtacat taatcttgat ctgaataaaa aacattttga attctaccta       720
     acaacaatgg ttttataata gttccctttt actttatcaa ttccttacga atgtgtttcc       780
     ttcgcaaaaa tcacaatgcc aaaatcacga aagtgcattt aagccctaat atatgttgtt       840
     ttaaagtaaa cattatgaac gaaaataaca tcattaaaag ctattctttc gaataaamaa       900
     tataaaataa aatttacgtt ttaaatttga aaccctgatt tttcagagct aaaagaatct       960
     ttaaatgtgt tttactcaaa acttactttt tgcagtttcg tggttttggc gtggtaccga      1020
     cg                                                                     1022
//
ID   DNA4-3_AP   repbase;    DNA;    INV; 637 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-3_AP.
XX
NM   DNA4-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-637
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1740-1740 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD (TATA). A variant of this transposon is inserted in
CC   DNA8-1_AP.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 637 BP; 234 A; 77 C; 82 G; 241 T; 3 other;
     ccgggtgatt cttttatcat ngaacactca ttatttcaaa aagtgtaaat ttttttgaaa        60
     atattttttt acatagtttc aagtcgctta taaaacaacg tttttcttaa aaaattatat       120
     ttttaaatat tttttatcct tataattttt taagtttttt acttttttga atgacaacat       180
     agggttttaa ttttatattc caaagcagaa tatttttctt agtattttga tacatgaaaa       240
     tcgaatttgg ggcgagtagt ttatgagtta taaatattca aagtttagat gagcggagtg       300
     gagtggtacg gggttacccc gcgaaatgtt tgtccacttc tccgctcgtc taaactttga       360
     atatttataa ctcataaact actcgcccca aattcgattt tcatgtatca aaatactaag       420
     aaaaatattc tgctttggaa tataaaatta aaaccctatg ttgtcattca aaaaagtaaa       480
     aaacttaaaa aattataagg ataaaaaata tttaaaaata taatttttta anaaaaacgt       540
     tgttttataa gcgacttgaa actatgtaaa aaaatatttt caaaaaaatt tacacttttt       600
     gaaataatga gtgttntatg ataaaagaat cacccgg                                637
//
ID   DNA4-3_BTa  repbase;    DNA;    INV; 944 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-944
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 924-924 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 4-bp long, ANNT
CC   specific.
XX
SQ   Sequence 944 BP; 305 A; 178 C; 190 G; 271 T; 0 other;
     gaatcggctc gtgcgaaaac cgctaatgtc cattttctct tattttgagt aaactgcaaa        60
     aaactgtaga agccttttaa atgcgggatt aaaaaatgtt cagaagttga ttattacaag       120
     agtggattgt agaaaaggat ccctaacagt ttccagctcc tcttctgtct gggatggagt       180
     aattaaaaag aaaggactct ggacattagc ggttttcgca tgatacgtaa aaatcgccga       240
     gttttggagc cgtttgatat tttcaaaatt cattctaaag atgttaaagc ggtagattat       300
     cattcacata aagttgaaaa aataaaattc cggacaattg cggtacttaa aataagtttc       360
     atcacgaaac tcccagcaat aaactggaca ttagcggttt tcgcatgatt tgtgcgtgga       420
     cggttctaaa acatcgaaaa cgcatatttt tcagtatgcc tttcgggcaa aatacggtta       480
     tccttacgta ttttgaggcg ctgaatccga atatgacctc cgttttttcc catcaccctc       540
     caatttaaca gtcgggataa cagtcggaaa aacaccgaaa atgcccaaaa atgatcattt       600
     ttccgagtaa aatcggcttt tccggaaaat tggagggtga tggaaaaaaa cggaggtcat       660
     attcggattc agcgccttaa aatgcataaa gatcacctaa tgtcgtccag gagacatttt       720
     tttattttgg tttgttgtac agtataatga ggcatataac gaaagatgga cattagcggt       780
     tttcgcatga ttcggaccac ggccccccct gaaaagggct tcaaacctaa ggaacaaaca       840
     ttttcactac attaatgagt gtgtctgacc tccgagagta ttttaaccca aaaatctcaa       900
     aattgaaaaa aatggacatt agcggttttc gcacgagccg attc                        944
//
ID   DNA4-3_CQ   repbase;    DNA;    INV; 1108 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1108
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 73-73 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. 46 bp TIRs. 4-bp TSDs.
XX
SQ   Sequence 1108 BP; 363 A; 216 C; 208 G; 321 T; 0 other;
     ctgccgtttt acggcgatat gatgtatacg ccattttgga cattttcaat tttattgtac        60
     agtctgataa agaatcttaa aagctacctc ctgacgaaag aatttttcaa aaaactgctc       120
     tggggcccat tttattaagc aaacaaacaa tgatgtatac gccaatttta ctcatcatga       180
     tgtatgtata cattgagaat tgatagaagt caaattcaat actgtttgaa tgttgatttg       240
     aggttttggg accaaatcaa gactgggcaa tattttatta cattatttcg atttaattct       300
     taaggggacg tccattaggc gtcatccata aagtacgtca cgctctgagg gaagaggggg       360
     gttctgagaa agcgtgacgt tgcgtgttaa aagcataggg aaatcgtgac aaagggggtg       420
     gagtaaattt tggctgattt taatgtgacg tacttaatgg atgacgcctt atccacatcc       480
     acgtagacac ttttttgaaa attctagacc cacccacctc ccttgctgac aattgttcat       540
     gcaaaaaatg tgtttatgga gcatagacaa tcgctaaggg agcgttattt tattacgtaa       600
     cgcaaaaaat cggattttta gaccccaccc cccctcgtaa caaaatttcc atacaaattt       660
     taaaaaaatt gtatggagcg taacacggcc cccccctccc cccaactgcg ttacgtaata       720
     aaagaacgct ccctaatacc ttcccccccc ttaaagtatc cacgtggaca atgcattacg       780
     ggatccactc agctatcaaa atagctggca caaaaaataa agccagcttt gatcgagcaa       840
     tgtatacata catcattggg caggaaaagt agtgattttt tattgctatt tttacggcca       900
     aatgatgttt gtggtttaaa atcgtagaga ataggaaaaa acaagaaatt ttgtaggggc       960
     cacattttta ttgtactttt taacagtttc tacagagcag acctcaaatt agtcatttta      1020
     aattgaaaaa aatgaacaaa aacagaaaat cgtgtctaca gcaaaatcac ctcaatggcg      1080
     tatacatcat atcgccgtaa aacggcag                                         1108
//
ID   DNA4-4B_BTa repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   25-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-4B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-253
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 887-887 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 253 BP; 78 A; 44 C; 48 G; 83 T; 0 other;
     ctgccgtgct aaggaagaac gccgtatgaa cattcgagag ttgccaaatt tcccttgata        60
     aaatatgtat tttggccaac attcatgcat atttttcctc gaaattttca gatattttag       120
     actaaattgc gtagaaaaat gtctgaaaat tttggaaaat aatattcgca attttcctag       180
     taaattagta ttttatcgga ggaaacttgg caacgtctga aggctcatac ggcgttcttc       240
     cttagcatgg cag                                                          253
//
ID   DNA4-4_AP   repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-4_AP.
XX
NM   DNA4-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-239
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1741-1741 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 239 BP; 77 A; 50 C; 46 G; 66 T; 0 other;
     cgcccgccgc agcgaagaag gtcgtatctc tgttttcaca attttttttt tcaagttgtc        60
     ataactgttt ttgtgtagtt cccgcgaaac tgatagtagc ataaaacaat caaagacgtt       120
     ctatacaata aaatgcagtt actaccgtct tcgcgggaac tacacaaaaa cagttatgac       180
     aacttgaaaa aaaaaaattt gtgaaaacag agatacgacc ttcttcgctg cggcgggcg        239
//
ID   DNA4-4_BTa  repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-253
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 867-867 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 253 BP; 80 A; 47 C; 49 G; 77 T; 0 other;
     ctgccgtgct aaggaaaaac gccgtatgaa cattcgagag ttgccaaatt tccccggata        60
     aaacacgtat tttctaggaa aattattcat aattttcttt gaaattttca gatattttag       120
     ataaaattac tgacgaaatc ctccacaaaa ttggagagga aatattcaca aattttcctg       180
     agaattcgtg atttgtcgag ggaaatttgg caacgcctga tggttcatac ggcgttcttc       240
     cttagcacgg cag                                                          253
//
ID   DNA4-4_CQ   repbase;    DNA;    INV; 147 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-147
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 74-74 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >87%
CC   identity. 62 bp TIRs. 4-bp TSDs.
XX
SQ   Sequence 147 BP; 44 A; 27 C; 31 G; 45 T; 0 other;
     tcaagcaaaa caatgtaaat gggccaatgt gagtttgtaa acaaagagtc tatcctgctc        60
     acgtcagtgg atgtttacat taggagtgag caggatagac tctttgttta caaacccaca       120
     ttggcccatt tacattgttt tgcttga                                           147
//
ID   DNA4-5B_AP  repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-5B_AP.
XX
NM   DNA4-5B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-263
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1952-1952 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD (TATA).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 263 BP; 50 A; 77 C; 79 G; 57 T; 0 other;
     tactccggcc cacgagagtc catatgtcag aacgcgtccg tcgctgcgca tcggttcccc        60
     ttccatacgc cgaatcatac cgatcggaaa ccggccggca acgatcgccg acagccgtcg       120
     ttagccgtgt ttttatgacc cgctgtattc acgttgccga gtggtgggaa cggcactatg       180
     gtgggagaaa attcggccgg cagccgtcgc gtaccgtcag tatggatgcg cggtttacgt       240
     atggactctc gtgggccgga gta                                               263
//
ID   DNA4-5B_BTa repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-5B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-137
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 888-888 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 137 BP; 42 A; 25 C; 25 G; 45 T; 0 other;
     ggactacatt ttgcaattcg gaactataat ttctggctca gtttagaaac agcgtatgta        60
     ccattagttt ccctatgcac ataagtgttt ttacagatga gccagaaatt atagttccga       120
     attgcaaaat gtagtcc                                                      137
//
ID   DNA4-5_AP   repbase;    DNA;    INV; 158 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-5_AP.
XX
NM   DNA4-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-158
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1742-1742 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4 bp TSD (TATA).
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 158 BP; 38 A; 38 C; 47 G; 35 T; 0 other;
     tactccggcc cacgagagtc catatgtcag aacgcgtccg tcactgcgca tcggcacgtt        60
     gccgaatagt gggaatggca tcatggtggg agaaaacaga cgtcacgtat tactatatga       120
     atgcgcggtt tacgtatgga ctctcgtggg ccggagta                               158
//
ID   DNA4-5_BTa  repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-137
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 868-868 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 4-bp long,
CC   AATT-specific.
XX
SQ   Sequence 137 BP; 44 A; 27 C; 23 G; 43 T; 0 other;
     ggactacatt ttgcaatttg gaactataaa ttctagcccg gtttaaaaac aacgtatgtg        60
     ccattagttt ccctatgcac ataagtgttt ttccagaaga gccagaattt atagttccaa       120
     attgcaaaat gcagtcc                                                      137
//
ID   DNA4-5_CQ   repbase;    DNA;    INV; 1246 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   16-MAR-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   Repetitive element; REP-5_CQ; DNA4-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1246
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 608-608 (2011).
XX
RN   [3]
RP   1-1246
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (16-MAR-2021).
XX
DR   [3] (Consensus)
XX
CC   [3] Consensus update. 4-bp TSDs, often TATA. 593/594-bp TIRs.
CC   Renamed from REP-5_CQ.
XX
SQ   Sequence 1246 BP; 390 A; 228 C; 231 G; 397 T; 0 other;
     cagcaattcc ccacgaaaac agcatgattc gaaaaaaaag ttctccgatc gggctcaaaa        60
     tttttctggg ggatccttgg ccgaaataat tagacccgta tttttttgtt tggccattag       120
     ggtgacctac gccgtgttag ggtggtccga aaaatggcaa ttttcgtcga ttttcgcaaa       180
     aaccactttt ttcaaaaaat catatctccg cgccatttca tccgatttta gctgtcttag       240
     acgcaaaaga aaggtgatta gtttggctat ttgggaaaaa tagtaagaag tttcgaaaat       300
     ctagcttaac atttgaaaag gtcatatgaa aacttaaaat gctgttttga aggtctcggg       360
     accaaagagc ctatgtctga aaatattttt atcggattcc tcggaaaatt tcacataaca       420
     tatcaaaaaa tggtgaagtt atgttttcga tactctgaga tacgattttt tgaaaataaa       480
     aactgggttt ttcgacgcgc cacgcgcaaa aattggaaaa tgacgaaaac ggggaaaaat       540
     cgactttttt cactaaaact gcgataactt taaaatttca gcgatgacct atagatgtta       600
     tggtaccaaa agttgcgtct tttaattacg aaaattttag taccctaaca tgtataggtc       660
     atcgctgaaa ttttaaagtt atcgcagttt tagtgaaaaa tgtcgatttt ttcccgtttt       720
     cgtcattttc caatttttgc gcgtggcgcg tcgaaaaacc cagtttttat tttcaaaaaa       780
     tcgtatctca gagtatcgaa aacataactt caccattttt tgatatgtta tgtgaaattt       840
     tccgaggaat ccgataaaaa tattttcaga cataggctct ttggtcccga gaccttcaaa       900
     acagcatttt aagttttcat atgacctttt caaatgttaa gctagatttt cgaaacttct       960
     tactattttt cccaaatagc caaactaatc acctttcttt tgcgtctagg acagctaaaa      1020
     tcggatgaaa tggcgcggag atatgatttt ttgaaaaaag tggtttttgc gaaaatcgac      1080
     gaaaattgcc atttttcgga ccaccctaac acggcgtagg tcaccctaat ggccaaacaa      1140
     aaaaatacgg gtctaattat ttcggccaag gatcccccag aaaaattttg agcccgatcg      1200
     gagaactttt tttttcgaat catgctgttt tcgtggggaa ttgctg                     1246
//
ID   DNA4-6_AP   repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-6_AP.
XX
NM   DNA4-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-242
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1953-1953 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD: TATA
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 242 BP; 47 A; 81 C; 72 G; 42 T; 0 other;
     ctctattcgc cgagagttga cccactcgct cgacgaaaac cggtcgcggc cgcgcaggcc        60
     accgcgtctt tggagcgcta gtggtgatcg tcgccagtag cagctgccta ctacgacgag       120
     cactgccgat cgccgaacac cgccgaccaa tcacagaccg ccggtctcct actcgggggg       180
     tctgaacgtt ccggcggctc agtatgcatg cgcgcaagtg ggtcaactct cggcgaatag       240
     ag                                                                      242
//
ID   DNA4-6_BTa  repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-137
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 869-869 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 137 BP; 42 A; 26 C; 27 G; 42 T; 0 other;
     ggaccacatt ttgcaataag gaaccactat ttctggctca ttttagaaac aacatatatg        60
     ccattggttt ccctatgcag aaaggtgctt ttatggaaga gccagagata gtggttcctt       120
     attgcaaaat gtaatcc                                                      137
//
ID   DNA4-7_AP   repbase;    DNA;    INV; 707 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-7_AP.
XX
NM   DNA4-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-707
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1954-1954 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 707 BP; 239 A; 114 C; 104 G; 250 T; 0 other;
     tcgatggtta gaaggtaaaa gggcgtaaac gccaatttcc aaattgttca ggagagccga        60
     aaaacagata ttttcatatg aactgtgtta caaccttaga acatcgtata acacttcgat       120
     ttgagactta atatgattta taatgagttt ttacgtattt tgtattgatt aattgttcat       180
     aatcataaca tatttgtgta tttaaagcca attaaaaaaa aaaaatgact cttacgcccc       240
     tttttttctg atcgtggctc ttacgcccca aagatgttct attgactata aagtataatg       300
     gatagtttaa tattgttatt tgttttatat tattgattaa attcaatgaa gatttgtatt       360
     aaaagtattt cgaaaattgt agatataaac gctttttaca gtgctgacaa aaccactaac       420
     aaaaatgata aattgatgta accgtcaaca atgacgctta cgtattatca agtttccttg       480
     aatgccgttt acatctttta attgacgttt acacccagtt ttttcattcc caccaattct       540
     atgccgttta cgaccacata ttaaaacatc gattcttgga tatatacaaa tgatagcgat       600
     gtttaggttc gattaatcga tgtataataa tgccgtttac aacaatatgc aaaaacatcg       660
     attttgaaaa aagtggcgtt tacgcccttt taccttctaa ccatcga                     707
//
ID   DNA4-7_BTa  repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-254
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 870-870 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 254 BP; 78 A; 42 C; 53 G; 81 T; 0 other;
     gaggcgttgg gtgcagaaag ggcatttctt ggttgcggtg tttcagaatc tccagtgcta        60
     atttttattt tagagaggaa actattgggt gaattttctg aaattttacg ttttcagcac       120
     tgtaaaatca taaagaatat tcagtaaaag ttacaacaaa ttacatacat ttgcttcaat       180
     tataatggat gaaacgttag cggagatttt gagacactgc aaccaagaaa tgccctttct       240
     gcacccagcg cttc                                                         254
//
ID   DNA4-8_AP   repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-8_AP.
XX
NM   DNA4-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-247
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1955-1955 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 247 BP; 81 A; 43 C; 39 G; 82 T; 2 other;
     gaagggctcg gtgcaacaac cagacaagtc cacttttatc aattgttcag ganaagcaaa        60
     acaaaattct ttatctcatt taccntaatg ggcgggaaat aattcatttt gagatatctt       120
     tggaaataat aaagcgattt ttctgatttt tctaccaaaa tatagatatt tcttccatga       180
     ataatattcc atgaaaaact catttttgat aaaaatggac ttgtctggtt gttgcaccga       240
     gcccttc                                                                 247
//
ID   DNA4-8_BTa  repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-248
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 871-871 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 248 BP; 81 A; 51 C; 42 G; 74 T; 0 other;
     gaggggcttg gaggacaagg cgcataagtg cagtttttga aaaaattgag atattaatga        60
     tttcaagtaa aactagtctt aatgcatatt ctgtgaaaaa ttcgctccca aattccaatt       120
     tttaagcatc aaaaagtcag tttgaacttt ctttccgcca taaggatcca tgtaatttcg       180
     aaacttcaaa cacgtatttc tcgaaatagc aaaaactgca cttatgcgcc ttgtcctcca       240
     agcccctc                                                                248
//
ID   DNA4-9B_AP  repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   31-AUG-2009 (Rel. 14.09, Created)
DT   31-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-9B_AP.
XX
NM   DNA4-9B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-185
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1956-1956 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 185 BP; 41 A; 51 C; 55 G; 38 T; 0 other;
     ctatactcta ttcggaatga gatcgtacct cggcggcgac cagttttcgt cgggcggcgg        60
     tcagacatat ggtgagacgc ttcccccacc tagaaagctc gtggggctag cgctgcggaa       120
     cgaagccacg cccatgcgca gaagttggcc gccgaggtac gatctcattc cgaatagagt       180
     atagt                                                                   185
//
ID   DNA4-9C_AP  repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-9C_AP.
XX
NM   DNA4-9C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-165
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1957-1957 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 165 BP; 36 A; 54 C; 44 G; 31 T; 0 other;
     tactctgttc aaaataagac gatgacctgg cggcgaccag ttttcgttcc gcgacggtca        60
     gacgccgtcc ccactacggc gacgcgtcgg gcgctgccac ggaacaaagc cacgcccatg       120
     cgcacaactc ggccgccggg tcatcgtctt attttgaaca gagta                       165
//
ID   DNA4-9_AP   repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-9_AP.
XX
NM   DNA4-9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-177
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1958-1958 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 177 BP; 42 A; 53 C; 48 G; 34 T; 0 other;
     tactctgttc aaaatgagat cattactcgg cggcgaccag ttttcgtcgg gcggcggtca        60
     gacatatggt cagacgccgt ccccactacg gcgacgcgtc gggcgctgcc acggaacaaa       120
     gccacgccca tgcgcacaac taggccgccg agtaatgatc tcattttgaa cagagta          177
//
ID   DNA4-9_BTa  repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA4-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-380
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 872-872 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 380 BP; 99 A; 89 C; 97 G; 95 T; 0 other;
     ggacgtattt ctaccaaaca gacctatgtg gaggtgagaa atatggggtg tgctcgtcga        60
     agctgcataa gaagcaatgt aaaagtgggc gtgattcctt ttgaagaatt ggaaaagcgg       120
     gattttacat tctatcaaac agacctatgt gccaactgaa tgcgggagtc atgagccgcg       180
     ggcatggcaa gagagcgttg tggacagggc tcatgagtta aagactccct ccaacgacct       240
     ccccgtcgtg ccggcgctcg ttcgttgccg ctgacgtcac tggcgcttta ttattctcat       300
     tcactcttac gcaaagagaa ctaacgagca caccccatat ttctcacttg cacataggtc       360
     tgtttggtag aaatacgtcc                                                   380
//
ID   DNA5-1B_LMi repbase;    DNA;    INV; 5546 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5546
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2894-2894 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 5-bp long.
XX
SQ   Sequence 5546 BP; 1749 A; 1072 C; 1039 G; 1686 T; 0 other;
     gtggccaccg aaccttgaaa ccggaaaaag ccttgaattt gaaagaaacc gggaaaaaac        60
     cttgaatttc agccagaaac cgggattttt aacccatgag atctcgcggc tttaagagtt       120
     aaagatcgtt cagccattgc tcagattaca cgaccagttc gaaatgtact taataagtgt       180
     aaacaagtaa ttcctgtagt ttgtaagaaa aacctcaaag tttaatattt aaaagtaaca       240
     aaatgccagt cgttttaaaa ttacggtgac ctaaatgctc agatcgctag tgcccgcggg       300
     ttaaataata ttcatcgctt catttttgtg tcaaaaacat tttcaaatat atttctgggc       360
     ggttaaaaag ttttataatt ataggttacg tattccgtta tctatttctg tatttatctc       420
     gaagtgttgt tcaaccaccg actcaattcc tcgcgatgta cgtcgaagag acgcgtgtta       480
     tcgaaggcgc gactacgaaa tcgcagctag aatgaaagcg atatttattt gtactacatt       540
     ttagcaattt tcgtaattgc cccccccccc ccagtgatac tcatcaacac agatctcgtt       600
     tgtctgattc tgtgttgaaa aatctcttca cggaagcatt ttccgtaatt gtgatgcttc       660
     gttagcatag gcgccactag gtgctcggtc gctcagcata ccccaaaatt tgaatgggta       720
     tgccaggcat aacccactga aaattttggt atcatttttt ctttacttat atttcttgac       780
     tgtaattaaa atcgactctc tcatcccatt gatggccggc tggcttttgt aagacaccac       840
     tctaaataga ttattttaaa caggtaattg aattcgtagg cattaaaatc cacgttcaca       900
     tgtgagtgaa gtgaccgttt tctaaatagt ccgaatgtta atggaattcc acttgttaag       960
     tcaatattgt aaactgaagg cggcaacctt taattgtatt aaataactag aaatgaagtg      1020
     ggtttggtac gatacattga aaatgtttac actacaaatt taattcccgg tatcttttga      1080
     gataaccttt tgacaaccac atacgttacc agtgagccga catacttgct gcgaagactg      1140
     ccctatccct tctagctaaa acattctgta aacagacagt cctcataaca acttgcgaag      1200
     gtctttgtgt tttaattggc agctctacaa aattctccaa atgcaacagc tagtaatgat      1260
     ttttttctga atttgaattt tcaggcttca acatttgtca acaattgaac gtgtagtcgg      1320
     accttagttt ctgctctttt tgacgtgtca cctgtgcatg gaattacgtc ttaacccttt      1380
     ccctcccctc atctttatct gtccgtctag ccacaaccat ttgttaaaga ttgtaaataa      1440
     cattgcaggg cttccaataa ttcattgtga ctagattttt taccgttacc ttgaggaaac      1500
     aaaaagcatt aggctacaat gcattgtcaa aatatatatc ttgcttgatg tctaagttgg      1560
     agtaaatgca acaatacttt caaataattg tatcaaggta aaggaaacaa aataatttaa      1620
     aaactttatt actaaataat tgtccaatgt ctaaattagt agtcaacagt ttgaaaatgt      1680
     tattagttac gataaaggaa acatatcctg cacactgcca tctgtagtca tcccaaattt      1740
     ccatccaaaa actaaaaata atcaaaaatt ctgtcaaata tacattaatc caatcattat      1800
     ttatagatat atgcaaagaa atttttgttc ataaatcaat aaaatttggg gttaaaaggg      1860
     ttaatgtctt gcgtgtgaaa atcgttaaaa tggataagta tatagtgaaa tacaaaagga      1920
     cttcgactta taatcgtgat ggtgacggtg atatggaatc gatagcgtgt atgttttgtg      1980
     taagtttttg gctttgcttt gtatttattt atttattttt ctttagaaat acctgggtac      2040
     gccactgagc ataccccaag attttcaaaa gtcggcgcct atgttcgtta gtaataatta      2100
     tagacgattc ctgtgactga cgtgacattg gtaatatata aatagtaaac acagtcatga      2160
     tgtacgtatt gttgatggct gaactgtttt tcatgcgggc ccggctagcg ccatgagagt      2220
     cgcggtaaca attagaggat aattattcta gcggacaagg gtacatcgag aacccgccac      2280
     ctagagcagg aacagcatta attatttatt ttatggtcaa cacaaaagat tattcccctc      2340
     gttatatgtt aatgggtttt caaaaagcat acgtacacgc aacgccacct agtgagcgct      2400
     agccgggccc gtatgaaata cagttctaac actgttgatt gcgacttttt gacatgctaa      2460
     ttgtcctcca aaaagatgta agtataactc tgtaatacgg tacgcgactt ttgcgaaaag      2520
     gcaatttctt tcagttgtaa tttattgctt taacagctgt cttataacaa tacattcaaa      2580
     atatcgttaa atatatttag agactaacgc catctacatc tttctgagat ggaacagagt      2640
     gaaacaatcg ttgcagagaa caatagagtg aatccaagtg tgaatcgacc ttacctgtgc      2700
     ccgcacagat gaagtaattc aacgtgtttt agagtgaagt gtttgtccgt catgtcaaaa      2760
     cagagtataa ctcgatatca gagctcatac gagacagtgt atccgtgggt tacatgtgat      2820
     cccaaatcac aaacgaatgc attatgctct tggtgcaacg caaagataaa tatttcttca      2880
     atggggaaga gtgctttgaa cagccacgca agaagcaaga aacataaact ttccataaac      2940
     aaacggaagt ctgttgcttt ccacaatata tatttcactg tctgtttagt actacaagaa      3000
     tttaaaaaat gaaacaaatt cattaaaaca aaataatgtt ttcattaaaa tctgctgttg      3060
     agtgttattt taccagatga cactagaatg caaataccac acagctgttg ctccagatat      3120
     gtttttgcat tctcgatttc atctcctcga agttcaagaa ctcgccgaca acattgtgca      3180
     ttattacgca tgctgggtca ttaacattca ttgatctttt agctagagtt ttccagggca      3240
     aaacttatga ctgtatgggc tctggaaact gaaaaccatc attgggaaca atctaaatga      3300
     aaacttgaaa gaggtgaaaa tgtttttcat atcctgaagg taaagtaaat cataatatat      3360
     gtattgagtt ctcgatcact agttcatgag atgtgactgt attttaatgt atcaggaagt      3420
     ctagtataaa tgaacgggct atgttgcata aacgaatgca attcacatta aaacgtacag      3480
     tatcctccaa ctacttgaac tcaacttggt ccattataca gggtgtaaat tttaagttga      3540
     caaaccggaa taactcggaa aaacagtaga tattaaaaaa tggttttcac cagcatgtgc      3600
     ggatggcaga ggcttaggaa ataatactca acctgaaccg tttccaccgt ttgtgggggg      3660
     tggggagtgt caagtgtaaa attttaaatg ggaaccccga ttttttattg cagattcgga      3720
     ttctaaggcc cacatcatgg gtaaaagtgc agtttatgcg gcagcggcta gccgtcgcgc      3780
     tcgcttggtt aggaacggca gagcagccaa tcaggagtca cgatgccgtg gccaataaga      3840
     aacagcgtta caattgtcca atgtaaacaa atcgaagcgg tgtatgcaaa agtttttgac      3900
     gatcaacaag ttacagttgc tatcagtatg gatgccactt gatcactgtt tcgaacatat      3960
     cataaaataa ataaaacata ctatacctgc tctgtggttg acaggttctt atatgtaccc      4020
     ttgtccggtc agtaaaagta attgcggtaa tttccaagaa tgcttgcaat cgagatagct      4080
     cggactgaaa tgatatatcg agcgtacaac tgtaaatcga tggagtgttt ctgaaccgga      4140
     gattcgggcg ctacgcgccc tcacatacta aaaataaaaa cttctcgttt aacctatacc      4200
     taactttcac ttaagatgat cactgtttcg tacagatcat aaaataaata aaacatgcta      4260
     tacctgttct atggttgact gctgtggtgt attaataata ggtcacttat gggggtaata      4320
     ccacaattat ctaaaaatcc cttataaatg gaaaatcaat tacaatcaca caaacgccgc      4380
     accgaaatcg tcgaataaac tttgaaattg acgccaaatt tactcgtcat gaaacacgca      4440
     atcttattgg ccggcataac tcgactcctg attggctgct ctgccgttcc taacctagcg      4500
     agagcgacgg ctagccgctg ccgcataaac tgcactttaa cccacatcat gtatggtctg      4560
     gtggattttt ttttttttac gacagatggc gctgtaatag taagaaatac ttgtcatact      4620
     ggtgaagaaa tgtactaaac aggaaataaa ataaatgaaa accatattca tgatacttca      4680
     gaacgctacc aaatgatccc caaagtgatc cttccctctc cccgcagtgg acagggcagt      4740
     cttccaaagt gataccttag tccagattgc ccttgtctga ataccagtta tgaattgccg      4800
     acaaaacatt taattgaact agccgggaag aaatgtacat ctggtatcat ttggttgggt      4860
     tctgaagcat catcaatatg attaaccttt ttctttcctg ggtggtacat ttcttcagca      4920
     gtatggcaaa taattcttac cattacagtg caacatgttg ccaattgaaa gaaaaaaatt      4980
     caaccaaact acacatgatt tggtctgtag aatctgaatc tgcaattaac aatgggagtt      5040
     tccatttaaa attttacact agccacccac accgctccca aatggtggag acagttcaag      5100
     tttagtatca tttcctaagc ctctgccggc cgttcataat ggtgaaaacc gttgttgaat      5160
     atatactgtt ttttctagtt attctggttt gtcaacttaa aatgtacacc ctgtactata      5220
     cattgtgtca gtgtcgaatc tggggcgggg ggggggggct atggggctgc ggccccaaaa      5280
     ccatgaggaa aacctcataa tatggcagct ctcccccccc cccccccaac acaaatcctg      5340
     gattcgccac tgcttggtgt atattacaac gtgacatggt tcaacttgga tgacatgttt      5400
     ttaaaaaata tgtaactagt ttctttacgg tatagttgtt tgctaaccca tttgagcaaa      5460
     attaagtttc gtgaaaacct ggaaaataat tattttaacc tggaaaaaac cttgaatttg      5520
     aaaatgaaga tttggtggcc accctg                                           5546
//
ID   DNA5-1_AAe  repbase;    DNA;    INV; 2604 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   18-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous; DNA5-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2604
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1279-1279 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs. TIRs are ~900 bp long.
XX
SQ   Sequence 2604 BP; 894 A; 455 C; 422 G; 833 T; 0 other;
     cacggtgctc caattaccgt tattatcaaa taaaatatac catccaaacg gcagtcggca        60
     gttggttcct gacgttgttc tgcacctctg agctgaattt gaaaaaaatc cttaggcaga       120
     attttgagtt acgccctttt gaagtttata tgacaaaaat cacatgatgt atgccacttt       180
     aacttgctta aacaaagaga ttattataaa attttgtagt tttgtttttt tcatctgatt       240
     taagacactg aaaaatactt ttttcttaaa tttatctaga ctgacatttg aaaagggcca       300
     atgctatgtt tagttattac taatcagcca atactcgaaa catgatatct accaatcaac       360
     tcctgatagt gattttaaga aatggtccaa agcattcaaa tatgtttgaa caattcttgg       420
     acaggatatc tagatacgcc cttttgaagt gtaaggaagg aatattgcat ggtgaatttc       480
     gttccatcta taatcaacgg ttaggtgcat acataatcat tacacctttg cggttgttct       540
     tatttcatta aatttagcaa gttgcagaaa atttacacgt acacatattt tctagactga       600
     cattagaaaa gggccaaagt ataattgaaa tacatacaaa tcaatatagc taaacaatga       660
     ccatatcaaa gttgatcgta acactcgaac ttcacatagc tgtatgtata tcgtatatct       720
     gtattctatt caattctgtt taattctttt ctattctagt ctgttctgtt ctattcaatt       780
     ctactctact taaatttatt ttattctgat ccaccctact tgttcttata catattttta       840
     caaatagcca ctgttgtaat caacaactgc gtgcaaatca tttgaacggt acactttcga       900
     agtttgtacg acttgaaagc gctgacaggt ctgtgaaaaa gcgcttcgca cagactccga       960
     cacctgctca ttatgtcagc ctagccctcg accagtcgca ttgcagaagt atacatcaaa      1020
     catggttatt tgatatttcg aagatttcgg cagactcagc tcctcgcagc tctcgacaaa      1080
     cttgttcata ttaccttcaa aactgggatc cagctcgaat gaaaaacatt taatacaaaa      1140
     tgcttcaatt ctcgaaaact atcaaatgcc acaatacgtt ttcacttttg gaacgtttaa      1200
     ttccggatta caaaacggcg taagtaagaa tttcaacttt cgcaacccaa ccgctctttc      1260
     accgcctttg tatgcagaga caaagtgact taaccacgaa tcaaaaaaac tacttgagcc      1320
     gattttacac tggtagaaaa acgtcgaaag taactgaatg aaacggctta cggagaaccg      1380
     tttttgaacg cgagctgatt gtatgcaaaa tttaacgatg tacacggcga aaaaaattca      1440
     ttttaaaaca gttttaaaag acgggatgtg attcttctta attaattttc tcaaaaccgt      1500
     atgaaagtta cttacgtcga tttgaaaaag taatcgagaa ttccttaaaa tacataaaaa      1560
     attaacatat ataagttaaa acccttattt caacttacag tgaaataacc atttgaagct      1620
     tcattttctt agagcatata agaagcacgg atgaggagtc agaatctgtg catagctatt      1680
     tttcacagac ctgggagcgc tataaaacca tacaaacatc gaaggtgtac cgttcaaatc      1740
     ttttgggcgc agttgttgat taatacagtg tctatttgta aaaatatgta taagaacaag      1800
     tagggtagat cagaatgaaa taaatttaaa tagagtagaa ttgcacacaa tagaacacac      1860
     tagaatataa aagaattgaa tagaatacag acatataata catatacaga tatgtgaagt      1920
     tcgagtgttt catcaacttt gatatagttt gttcagctat attgatttgt atatatttca      1980
     attatacttt ggcccttttc taatgtcagt ctagaaaata tgtgtatgtg taaactttat      2040
     gcaacttgat gaattgaatg aaataagaac aaccgcaaag gtgaaatgat tgtgtatgca      2100
     cccaaccgtt gattatagat ggaacgaaat tcaccatgca atattctttc catacacttc      2160
     aaaagggcgt atctagatat cctgtccaag aattgtttaa acatatttga atgctttgga      2220
     caatttccta aaatcactat caggcataag attggtagat atcatgtttc gagtattggc      2280
     tgattagtaa taactaaaca tagcattggc ccttttcaaa tgtcggtcta gaaaaatttt      2340
     agaaaaaaga ttttttcaat atcttaaacc agatgaaaaa aaaaacaaaa ctacaaaatt      2400
     ttattctgtt tgtttaaaca agttaaagtg gtatacatca tgtgatttct gtcatataaa      2460
     cttcaaaagg gcgtaactca aaattctgcc taaggatttt tttcaaattc ggcccagagg      2520
     tgcagaacaa tgtcaggaat caactgccga ctgccgtttg gatggtatat tttatttgat      2580
     aataacggta attgaagcac cgtg                                             2604
//
ID   DNA5-1_BTa  repbase;    DNA;    INV; 2151 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2151
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 873-873 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 5-bp long, CGNCG
CC   specific.
XX
SQ   Sequence 2151 BP; 601 A; 427 C; 413 G; 709 T; 1 other;
     cacggtggat cgagtcaatg gtacaggtcg gtcatgggcg attcgggcga atcgcatttt        60
     ttaagggtca aaagtgttcc tcaagagtta tattttaagg atctgacatt gatttggaac       120
     gaaacatgtt catttttgtg acagaaggca tcaaagaggg gctttgcgta actttttatt       180
     ttagcgaaaa atcgtccgag tctttctatt ccatttaact tgcttctgtt taaattaatg       240
     ctaatttcat tgacatattc ttgttcttca gagtctggag aacacattgc actagtaatt       300
     ttttgtattc ggcccatttt ttcaatgatt atgtttgcgc taatgtgctc atctctaaaa       360
     gcgaaaaaaa aaagtttagg taaactttta actacccatc cgccaccatc cgccagaaaa       420
     atttgtatag gcatgttcgt aggagtcctg agaatacgat cccgcaaaat ttgggtgcca       480
     ctttgcgcca ctttggccgt gacgtcactt tttctgttgc gttccgagat tgtgcgcgag       540
     ccttatctcg aaaatcaagc gaccggtgag ctgccgcggc acttagcttg cttctgttta       600
     aattaatgct ggtttcattg acatattctt attttccaga gtctggagaa cacattgcgc       660
     tagtaatttt ttgtattcgg cccatttttt caatgattat gtttgcacta atgtgcttat       720
     atcaaaatgc agaaaaaaaa agttaaggta aacttttaac tacccatcck ccaccatccg       780
     ccagaaaaat ttgtataggc atgttcgtag gagtcctgag aatacgatcc cgcaaaattt       840
     gggtgccact ttgcgccact ttggccgtga cgtcactttt tctgttgcat tccgagattg       900
     cgcgcgagct ttatctcgaa aatcaagcga ccagtgaact ctcgtaactg ctaaatgacc       960
     caggtaggta tgattcctgt tcatcggaaa ctgaaaaaca agtttcacca tcaagacgtg      1020
     ctctttggcc cgtttttcgt attttcatta tttcctaaac tacatatcta taggagaact      1080
     aaaaaaaaaa tcgggcatat tttcactcgg acatcccttt atatccctta tagaaagctt      1140
     ttttgggacg tatgcgtaga tagctagctt gaggaaactt ttagcaagta accccccccc      1200
     ccctttactt gcctggcccc tgactatgat gccattttat ctgttggcct ccgcgatcgc      1260
     gcgcgaccgg tcactggtga actctgataa ctgatgcttc tttcaaatac gtacatattt      1320
     tttaattttt cacctatttc gatgtaaaca aagtgcagtt agtgcgaaac taattacact      1380
     gcgagtacgt tttaacgtta caagtccggg aaattttgga atttttgcgg ttttttgcgt      1440
     tgcttgtttt ttaagtttga tgcggtttga gagcggaaga cgaggatgag agtgatgggg      1500
     aactgaatat gaagaagaag aataaggaga agcagatgac agatgactgt tacatgttta      1560
     aatttttttt tcttttcttt tttttttcta gccatctagt gtttttccta ctctaagtcc      1620
     ctgttccgtc ctctgaatgt aaatatgaat ttaaagtaaa agtgatcttg aatattttca      1680
     aagaattcat aaatgtattt catttgtttt ctcaccgatc tttatgcata agaatgatat      1740
     cttatgacaa agtttcgaaa ttaactttgc agtgaaggga atgatttatc tgatgcagca      1800
     gctcataact ggggaggtat ttttgcgtat ttgtgacact tattagtaag ttttcataat      1860
     tttattcata atttatcctc ttccatcatg aaaaattaaa aactccgtcc tacgaagtaa      1920
     aacacagacg cctaaacttt gcacctgtat agttttcccg acaaaatgca caaatacggg      1980
     tcttcaggta cgttgttcac caaaaataac atcaaaaatg aattctacgc gaaaaattac      2040
     atgagatagt ggtacataat cgatcaaatg accaggaata ttcgttatcc tcgtaacatt      2100
     ggaagcgcaa cgctccatga ccgacctctc ccattgactc gatccaccgt g               2151
//
ID   DNA5-1_LMi  repbase;    DNA;    INV; 4885 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4885
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2971-2971 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 5-bp long.
XX
SQ   Sequence 4885 BP; 1544 A; 916 C; 906 G; 1519 T; 0 other;
     cagggtggcc accgaacctt gaaaccggga aaaccgggaa aaagccttga atttgaaaaa        60
     accggggaaa accgggaaaa aaccttgaat ttcagccaga aaccgggatt tttaacccat       120
     gagatctcgc ggctttaaga gttaaacgat cgttcgcgtg tatagcctat tgctcagatt       180
     acacgaccag ttcgaaatgt acttaataag tgtaaacaag taatccctgt agttttagta       240
     agaaaaaacc tcaaagttta atatttaaaa gtaacaaaat gccagtcgtt ttaaaattac       300
     ggtgagcaaa atgctcagat cgctagtgcc cgcgggttaa ataatattca tcgcttcatt       360
     tttgtgtaca aaaacatttt caaatatatt tctgggcggt ttaaaaagtt ttataattat       420
     aggttacgta ttccgttatc tatttctgta tttatctcga agtgttgttc aaccacgcga       480
     ctcaattcct cgcgatgtac gtcgaagaga cgcgatgtta tcgtaaggcg cgactacgaa       540
     atcgcagcta gaatgaaagg cgatatttat ttgtactaaa ttttagcaat tttcgtaatt       600
     gacccccccc cccagtgata ctcatcaaca cagatctcgt ttgtctgatt ctgtgttgaa       660
     aaatctcttc acggaagcat tttgttgatt ttaactataa actccgtaaa agttggtatt       720
     gtgatgcttc gttagcatag gcgccgacta cgggtatgct cggtcgctca agcatacccc       780
     aaaatttgag tgggtatgcc aggcataccc cactgaaaat tttggtatca ttttttcttt       840
     acgttatatt tcttgactgt aattaaaatc gactctctca tcccattgat ggccggctgg       900
     cttttgtaag acaccactct aaaaagatta ttttaaacag gtaattgaat tcgtaggcat       960
     taaaatccac gttcacatgt gagtgaagtg accgttttct aaatagtccg aatgttaatg      1020
     gaattccact tgttaagtca atattgtaaa ctgaaggcgg caacctttaa ttgtattaaa      1080
     taactagaaa tgaagtgggt ttggtacgat acattgaaaa tgtttacact acgaatttaa      1140
     ttcccggtat cttttgagat aaccttttga caaccacata cgttaccagt gagccgacat      1200
     acttgctgcg aagactgccc tatcccttct agctaaaaca ttctgtaaac agacagtcct      1260
     cataacaact tgcgaaggtc tttgtgtttt aattggcagc tctacaaaat tctcgaaacg      1320
     caacagctag tgatagattt tttttctgaa tttgaatttt caggcttcaa caatttgtca      1380
     acaattgaac gtagtagtcg gaccttagtt tctgctcttt ttgacctgtg tcacctgtgc      1440
     atggaattac gtcttaaccc tttccctccc ctcatcttta tctgtccgtc tagccacaac      1500
     catttgttca aagattgtaa ataacattgc agggcttcca ataattcatt gtgactagat      1560
     tgtctaccat tacctcgagg aaacaaaaag cattaggcta caatgcattg tcaaaatata      1620
     tatcgttgct tgatgtctaa gttggagtaa atgcaacaat actttcaaat aattgtatca      1680
     aggtaaagga aacaaaataa tttaaaaact ttattactaa ataattgtcc aatgtctaaa      1740
     ttagtagtca acagtttgaa aatgttatta gttacgataa aggaaacata tcctgcacac      1800
     tgatgccatc tgtagtcatc ccaaatttcc ttccaaaaac taaaaataat caaaaattct      1860
     gtcaaatata cattaatcca atcattattt atagatatat gcaaagaaat atttttgttc      1920
     ataaatcaat aaaatttggg gttaaaaggg ttaatgtctt gcgtgtgaaa atcgttaaaa      1980
     tggataagta tatagtgaaa tacaaaagga cttcgactta taatcgtgat ggtgacggtg      2040
     atatggaatc gatagcgtgt atgttttgta taagtttttg gctttgcttt gtatttattt      2100
     atttttcttt agaaatacct gggtacgcca ctgagcatac cccaagattt tcaaaagtcg      2160
     gcgcctatgt tcgttagtaa taattataga cgattcctgt gactgacgta acattggtaa      2220
     tatataaata gtaaacacag tcatcatgta cgtattgttg atggctgaac tgtttttcat      2280
     gcgggcccgg ctagcgccaa tgaggagtcg cggtaacaat tacgaggata attaatttac      2340
     ttagcggaca agggtacatc gagaacctgt caaccataga gcaggaacag cattaattat      2400
     ttattttatg gtcaacacaa aagattattc ccctcgttat atgttaatgg gttttcaaaa      2460
     agcatacgta cacgcaacgc cacctagtga gcgctagccg ggcccgtatg aaatacagtt      2520
     ctaacattgt tgattgcgac tttttgacat gctaattgtc ctccaaaaag atgtaagtat      2580
     aactctgtaa tacggtacgc gacttttgcg aaaaggcaat ttctttcagt tgtaatttat      2640
     tgctttaaca gctgtcttat aacaatacat tcaaaatatc gttaaatata tttcgagact      2700
     aacgccatct acatctttct gagatggaac agagtgaaac aatcgttgca gagaacaata      2760
     gagtgaatcc aagtgtgaat cgaccttacc tgtgcccgca cagatgaagt aattcaacgt      2820
     gttttagagt gaagtgtttg tccgtcatgt caaaacagag tataactcga tatcagagct      2880
     catacgagac agtgtatccg tgggttacat gtgatcccaa atcacaaacg aatgcattat      2940
     gctcttggtg caacacaaag ataaatattt ctacaatggg gaagagtgct ttgaacagcc      3000
     acgcaagaag caagaaacat aaactttcca taagcaaacg gaagtctgtt gctttccaca      3060
     atatatattt cactgtctgt ttagtactac aagaatttaa aaaatgaaac aaattcatta      3120
     gaacaaaata atgttttcat taaaatctgc tgttgagtgt tattttacca gatgacactt      3180
     gaatgcaaat accacacagc tgttgctcca gatatgtttt tgcattcccc atttcatctc      3240
     ctcgaagttc aagaactcgc ccacaacatt gtgcattatt acgcatgctg ggtcattaac      3300
     attcattgat cttttagcta gagttttcca gggcaaaact tatttgactg tatgggctct      3360
     ggaaactgaa aaccatcatt gggaacaatc taaatgaaaa cttgaaagag gtgaaaaggt      3420
     tgttcatatc ctgaaggtaa agtaaatcat aatatatgta ttgagttctc gatcactagt      3480
     tcatgagatg tgactgtatt ttaatgtatc aggaagtcta gtataaatga acgggctatg      3540
     ttgcataaac gaatgcaatt cacattaaaa cgtacagtat cctccaacta cttgaactca      3600
     acttagtcca ttatacaggg tgtaaatttt aagttgacaa accggaataa ctcggaaaaa      3660
     cagtagatat taaaaaatgg ttttcaccag catgtgcgga tggcagaggc ttaggaaata      3720
     atactcaacc tgaaccgttt ccaccgtttg tggggggggg gagtgtcaag tgtaaaattt      3780
     taaatgggaa ccccgatttt ttattgcaga ttcggattct aaggcccaca tcatgtatgg      3840
     tctggtgatt tttttttttt ttttttttac gacagatggc gctgtaatag taagaaatac      3900
     ttgccatact ggtgaagaaa tgtactaaac aggaaataaa ataaatgaaa accatattca      3960
     tgatgcttca gaacgctacc aaatgatccc caaagtgatc cctccctctc cccgcagtgg      4020
     acagggcagt cttccaaagt gataccttag tccagattgc ccttgtctga ataccagtta      4080
     tgaattgccg acaaaacact taattgaact agccgggaag aaatgtacat ctggtatcat      4140
     ttggttgggt tctgaagcat catcaatatg attaaccttt attttctttc ctgggtggta      4200
     catttcttca gcagtatggc aaataattct taccattaca gtgcaatatg ttgccaattg      4260
     aaagaaaaaa aattcaacca aactacacat gatttggtct gtagaatctg aatctgcaat      4320
     aaaaaatggg agtttccatt taaaatttta cactagccac ccacaccgct cccaaacggt      4380
     ggagacagtt caagtttagt atcatttcct aagcctctgc cgtccgttca taatggtgaa      4440
     aaccgttgtt gaatatatac ttttttttcc tagttattct ggtttgtcaa cttaaaatgt      4500
     acaccctgta ctatacattg tgtcagtgtc gaatctgggg tggggggtct atggggctgc      4560
     agatccccca aaaccatgag gaaaacctca taatatgagc tggttctttt tagatcagtt      4620
     tgaggtacaa tgccacaatt tttatgagct cctgcccccc cctccccaac acaaatcctg      4680
     gattcgccac tgcttggtgt atattacaac gtgacatggt tcaacttgga tgacgtgttt      4740
     taaaaatatg taactagttt ctttacggta tagttgtttg ctaacccctt tgagcaaaat      4800
     taagtttcgt gaaaacctgg aaaataatta tttttaacct ggaaaaaacc ttgaatttga      4860
     aaatgaagat ttggtggcca ccctg                                            4885
//
ID   DNA5-2_AAe  repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   24-FEB-2012 (Rel. 17.12, Created)
DT   24-FEB-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-343
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2466-2466 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. 5bp TSD.
XX
SQ   Sequence 343 BP; 112 A; 61 C; 51 G; 119 T; 0 other;
     cacgctatgt ctgaaccaga cgattataaa aatcgaatgt acatcggatt ttttctcgct        60
     agagtttagt atttgggtta tattttcata atcggaaagt tttaaaatat tccatcggtg       120
     aaattttgat tttttccact ttttagccat ttttcatact aaatcccatg aaaatcacgt       180
     tttcgacgca tttccgccca tacaaaatgt atggaaaaaa tttcaccgat agaatatttt       240
     aaaaccttcc gattatgaaa atatagacca aatactgatc tctagcgaga aaaaatccga       300
     tgtacattcg atttttataa tcgtctggtt cagacatagc gtg                         343
//
ID   DNA5-2_BTa  repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-232
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 874-874 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus. TSDs are 5-bp long.
XX
SQ   Sequence 232 BP; 80 A; 41 C; 39 G; 72 T; 0 other;
     cacactggac cgagtcaata ggagaagtcg gacaaaatct ggaaactttg aaagcttata        60
     ttttcgaaaa tatgaaacaa aaaagtttaa gagtggttcc attggttttt tcgtgaaatt       120
     tcctttcaga aacacccctt gaaattgaat ttgtgacgaa ataaacatca aaatttgaaa       180
     ttttagccaa aaatttcatg tccgacctct tctattagct cgttccactg tg               232
//
ID   DNA5-3B_BTa repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-3B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-468
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 889-889 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus. TSDs are 5-bp long.
XX
SQ   Sequence 468 BP; 133 A; 68 C; 113 G; 154 T; 0 other;
     cagggtgtct acaagtccgg aaagtccgga aatagtactg attttttaag ggcggtccgg        60
     aagtactgaa aaagtgcgga aattccgcaa gaaggtccgg aatttttttc atttttgtcg       120
     catttgagcg aggaattcaa atttttgaaa ttttcgaatt tcagggtgtc tacaagtccg       180
     gaatttccgg aaagtccgga aatagtactg attttttaag ggcggtccgg aagtactgaa       240
     aaagtgcgga aattccgcaa gaaggtccgg aatttttttt ttttgtcatt tttgtcgcaa       300
     tttgagcgag aaattcaaat ttttgaaatt tttcgaattt cgtcaattgg aggtactgaa       360
     aaagtactga atttttctgt tgaggaggta ctgaatttct tgggaatgta ctgaaaaagt       420
     actgtaaaag tactgatttt tggccagcct gttttagtag acaccctg                    468
//
ID   DNA5-3_BTa  repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA5-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-293
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 875-875 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 5-bp long.
XX
SQ   Sequence 293 BP; 84 A; 42 C; 68 G; 99 T; 0 other;
     cagggtgtct acaagtccgg aaatagtact gattttttaa gggcggtccg gaagtactga        60
     aaaagtgcgg aaattccgca agaaggtccg gaattttttt cacttttttg tcatttttgt       120
     cgcaatttga gcgagaaatt caaatttttg aaatttttcg aatttcgtca aatggaggta       180
     ctgaaaaagt actgaatttt tctgttgagg aggtactgaa tttcttggga atgtactgaa       240
     aaagtactgt aaaagtactg atttttggcc agcctgtttt agtagacacc ctg              293
//
ID   DNA6-1_CQ   repbase;    DNA;    INV; 1877 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA6-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1877
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 75-75 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. 6-bp TSD. 15-bp TIRs. The central
CC   region is very AT-rich.
XX
SQ   Sequence 1877 BP; 717 A; 183 C; 218 G; 759 T; 0 other;
     cagggttgtt acggacggcg cggatcgcgc ggatggcgcg gatggcgcgt atcgcgcgga        60
     tctggcgcgg atttgctggc taattttgct caggcgcgga tttcgcgcgg atagcaattt       120
     tgataaacaa aataattgag aacgatagaa tttctttcaa attacaaagg aaaatattat       180
     taggaattaa ataaattcaa tctttttcgt tgagtgcgaa aacatcaatt tctaagaagt       240
     tgttaatgaa gaaaattttc ttctaaaaat tattgatttt tttttcttaa tacgaaactt       300
     cgaaataatc ttcaaggagc gattttttta atgtattgag atttgttata taaatttaac       360
     ataacattac aactcattat ttttaaaaca tctgcttaac aattcaaata aataccaatt       420
     ttattaaaat caaaataaca aaattcgaaa aattacagaa tttaaaaatt tgaagctatg       480
     aaacttttta gattttctat gttttttcaa tataaaaatt taaattttta aatttttggt       540
     ttattgaaaa aataaaaatt ctgttgccac tctgattcag gtagaattga ttctactccc       600
     aattatcaca acatgacgaa atccacttag aaatctgcta aaatctccgt ctaaaagcga       660
     aatgtaatgt taaaattaaa aaataagaaa tctggaattc aacaatttga aatttcagaa       720
     tttacatatt caaaaaataa taaaaaaaat agaattcata atttgaaatt gtcaaaactt       780
     acagactcaa aaaacgtaaa aaagtacgaa ttattaaatt gaaaaattac gaaaatatta       840
     caattgattt tttgttaatt tttatttttt taagaaagtt cttaagttat caaattatta       900
     aattattaaa ttattaaatt attaaattat taaattatta aattattaaa ttattaaatt       960
     attaaattat taaattatta aattattaaa ttattaaatt attaaattat taaattatta      1020
     aattattaaa ttattaaatt attaaattat taaattatta aattattaaa ttattaaatt      1080
     attaaattat taaattatta aattattaaa ttattaaatt attaaattat taaattatta      1140
     aattattaaa ttattaaatt attaaattat taaattatta aattattaaa ttattaaatt      1200
     attaaattat taaattatta aattattaaa ttattaaatt attaaattat taaattatta      1260
     aattattaaa ttattaaatt attaaattat taaattatta aattattaaa ttattaaatt      1320
     attaaattat taaattatta aattattaat tattaattaa attattattt ttttgccatt      1380
     ttcttagttc ggatcatttt cggagtcata ttttagttta gagaaattta gagaagaaaa      1440
     taatagaaat ttcgtgtttc gattttccag agtaaagttt tggcgagaat tatcaagtac      1500
     taaatcccta gattttataa tttggtgatt tattttatgg ttttaatttt ttaaattttc      1560
     gaatttaatt ttttttcctg aatttgtttt taaagcaacg atatttaaag tgttgcaaaa      1620
     aatgctaata ttgtttcaga aatggcaaaa aaggttccat ttggtacagg tgggatatga      1680
     atccacaact gatcaacggt actgatccaa atgccttctg tattattctt ttttcgttta      1740
     aaatttcatt cattatgtta ctctcttcta tgtttgtcgc gatttttttt atatggcgcg      1800
     gatttcgcgc ggattgggtt ttggggtcgg cgcggatctg gcgcggattt tttctcgact      1860
     tttccgtaac aaccctg                                                     1877
//
ID   DNA7-1_AAe  repbase;    DNA;    INV; 3206 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3206
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1280-1280 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 7-bp TSDs. TIRs are ~500 bp long.
CC   The region 1700-1413 is an inserted FEILAI_AA (~96% identical to
CC   consensus).
XX
SQ   Sequence 3206 BP; 1039 A; 554 C; 540 G; 1072 T; 1 other;
     cacataacat atgtggaact cagaagtgaa agcgagttga aaagttgtac ccacttccag        60
     ctgctggcaa gtggtatatc tagtatagaa gacatcgaac tgtcattacc aatagtaaac       120
     aaaaaacata tgattcgagc agtagaccag ttgctgcgaa gattacagac attaagatcg       180
     ggggacggtc gacaacgttg ggaagcaatg tctaaagata aaacatgttt attttttcat       240
     aaaatgtaat tttttttctg tcatactata taatattcat gtttcataac aacagaatgt       300
     gatcgtttcg gaaatattat ttcctatcaa aaaacttcct gtttcataac gtgaaaaagc       360
     ttttgctttc caaaatcctt ccattcattc acctaaaaaa tacaatatgc tagaaacaac       420
     acagatatct aatacattga ctaaattatc tcggatacga gtggtgtaaa tctaattcta       480
     aacttgtacc ataaatagtt attttcattc ccttcgttgc cactctggat atatgttatc       540
     tttggttcat ttcaatacaa tgccacattg ggccagaccg caaaattaga tgaaaaaaaa       600
     attttgatta tgaagatgat tttttagaac aaaaatggct gaggcaaaaa tgttacatat       660
     gatgaggact acattttgac attaagtgac attagggtgg tccaacaaaa tacggaaata       720
     tttttgccaa cttttatgct ttgcaattta acgcttttaa gtgttctatc aagttgatct       780
     ttgtttaatt ttgaacaact ttgccgaaga cgccaatctt gtaagtctac tgtagccgtt       840
     gctatggcgt tttcaatgat gcagggtagg gtggtccatg aaaatttgat attttgckca       900
     ttactttttt atttcaaatt ctaccaaaat tacgccttct acaaagatct agaactaatt       960
     gaaacgcgta ttttggtgaa agaattaagt tattctattc attcgtttat gagatatgac      1020
     catttttatt ccaataaata atatttttcg aacttcaata tcttcaaaag ggggaaaaac      1080
     ggggatgcaa tttgtgcagg atttgaaagg tataacttag aggttcaaat ggtatatggt      1140
     atctccggag gatattggag gatttacagt ataattttga tgtgaaaaca aatagttttt      1200
     acaaactcat gattttagtt gaaatattga acattacggc aaagttctaa acataatttg      1260
     ggtgaaaact gttcaaccga atatttttta gcatattata cttatttata taatgtttag      1320
     attcatattc cgaacacttg cggtttacgc tgacttgaaa tgcaacttat aggcgaaaat      1380
     cagcctgagt tggtgataaa aatattaata tcttcttctt cttcttggca ttaacgtccc      1440
     cactgggaca gagccggctt ctcagcttag tgttcttatg agcacttcca cagttattaa      1500
     ctgagagctt tctttgccaa agttgccatt ttcgcattcg tatatcgtgt ggcaggtacg      1560
     atgataatct atgcccaggg aagtcaagga aattttcttt tcgaaaagat cctggaccga      1620
     ccgggaatcg aacccagaca ccttcagcat ggcgttgctt tgtagccgcg gactctaacc      1680
     actcggctaa ggaaggcccc gaaaaactta caataaaagg agatattaat atatctcctt      1740
     ttattgtaag tttttcgcaa aagcattgaa caacattttg tttccattgt caatcactgt      1800
     gattattctg ccacatattc cgatcactgt gattcatatt ccgaacagca cgaataaatc      1860
     ctattcatat aaataattta gcatacaaat taatctaagc tggtttatct gacatcgaac      1920
     tagaaagtca ttactactcc cagggtataa aataggttca aacacaataa atttgagttg      1980
     caattgactg ccacttcctg ggaatttgat gacatatatc ggtgaaatat ttcaaccaac      2040
     acgccataca aaatccgcgt gtttggaata tgatactgat tgtttaatgt tttaaatcat      2100
     caacgaaaat gttttgattc gttgtatatt tccaatgagc aggctgtgta tggttgaaag      2160
     tgattaaatt ttatttaaaa aaaaattgga ctatgaaatt ggtaatgctt tttggttttg      2220
     tagaaaaatt actttgcaat ggattacctg cttcgctctt gtccacagtt gatcagcaga      2280
     agttttctcg ttttattttg tatggggaaa ggcatttaac ttcaaatttc tcgtaaatga      2340
     aatcattagt caaaaaatat ttggtaggcg tgatcaccat caccatcaca cacaatcggt      2400
     accaaatatt ttttcgaaaa tagtttccaa tttggagaaa taattcgtta atgtatttcg      2460
     ccatacaaat attttaaaat tatacggtaa atcctcaaat attctccagc gatacaatat      2520
     accatttgaa cctccaagtt atacctttca gatcctgtgc aaattgcatc cccgttgttc      2580
     cccctttttg agatactgac gtttgaaaaa tatgattttc gaattaaaat ggtcatatct      2640
     cataaacgaa tgaatagaat aacttaactc tttccccaaa atacgcgttt caactagttc      2700
     taaatctttg tagaatgcgt aattttgata gaattggaaa taaaaaaagt tatgggcaaa      2760
     atatcaattt ttcattgacc accctaccct gcatcattgg aaacgccata gcaacggcta      2820
     cagtagactt acaagattgg cgtcttcgga aaagttgttc aaaatcgaac aaagatcaac      2880
     ttgatagaac acttcacagc gttaaattgc agagcataaa agttggcaaa aatatttccg      2940
     tattttgttg gaccacccta atgtcactta atgtcaaaat gtagtcctca tcatatgtaa      3000
     catttttgtc taagccattt ttgttctaaa aaatcatctt catattcaaa atattttttt      3060
     tatctaattt cgcggtctgg cccaagtgca atgtcgattg atgtattggt ggtataactc      3120
     ttttgacatt tcgatgtcct tataccagca tgcaaatatt aaagtgggtg ccactttttg      3180
     agctcgagtt ccacttatgt tatgtg                                           3206
//
ID   DNA7-1_CQ   repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-468
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 76-76 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 22 sequences with >95%
CC   identity. 7-bp TSDs.
XX
SQ   Sequence 468 BP; 141 A; 93 C; 96 G; 138 T; 0 other;
     cacgggattg aaactcgtct gaaaaacctg tatcattttc tcattcgaaa cagtggcgcc        60
     acgtggtggt agctgccctg tttattacac tgtgaaatta tccatggcca atccaaggaa       120
     ccagaaggtg acaacagaaa tgtccgtcca aaaggggtgc tgcaaaaaaa cttattattt       180
     ttaacaaatt ttcgaacaaa tcagcaacga attacaagtt tgacagtcga actacactta       240
     aaagttggtt ttgttatttg tttttgcaaa accgcatatt tttaacgaaa gtgccaaaaa       300
     tattcgtaat caccttttgc ctcttggtgg cgctttgtgt tagtatgtgt gtggtcgatg       360
     tttgcggacg tgcacgcaga acacagaaca gtgagaacta gcgaaaatgc ctcactttct       420
     tctgatacaa gtcgccatat tgaaattgct tgaagattca tacccgtg                    468
//
ID   DNA7-1_DEl  repbase;    DNA;    INV; 1706 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA7-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1706
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 428-428 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 7-bp TSDs. ~840-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1706 BP; 544 A; 311 C; 312 G; 539 T; 0 other;
     cactaaccat acaacatata gactggtcat ttcatacgac gcatttggac acaaaaaaac        60
     ggaccgcgga aggtccaccg ctctcacagc agcaggtcca tgcacttcgt gtgcgttcgg       120
     gttttttact ctctcattct tattctcatt tttatgctcg cgcactcatt gcacgagttc       180
     agtcgttcag tcgcagagag gcgctttttg aagaaggctg tcctgcgctt gaattcgtct       240
     ttgtatgtat gcgtgatcat gcattctcat acacgggagc atgtgtgcgt ttatttcatt       300
     tcggcgcatc aagaatattt tgtcttttgc cacttttcaa acttggtacc ctaagaatat       360
     gggcgtattt actattgggt tatgatataa atattaatat tatatgttac aatatatttt       420
     tttaatattt cagcatacat tttatttttg tttacaaatt caaatcagtg gtagcagtaa       480
     aatgttttac atatatgtat gtattcgaat ttatagaaat cagtccactg agatgggaac       540
     agggcatatc gcagtcgtgt cacttgaaac accgactgct cttcagtggt tgagaaaact       600
     tcaaactaaa tcaattcttg tcgatgtttt gcgagcggtt ggtgcctgca taccctaccg       660
     acgattgctt ttaaggggag cgggctttta ggacacttgt tttaaatgtt atgtttagtg       720
     atctttggtt gatttatttt ttaatgattc gcagtgttat tttaattgtc tttaaacaat       780
     tcgttaaaat tcaagatact tggtacaatt gaaaatctaa aattataatc attaaaatca       840
     aattattatc attaaaaaaa tgtggatttt tatatttgtt ccatttagat tttcaaaaat       900
     gtaaaaagta tcttgaattt taacgaattg tttaaagaca attaaaataa cactgcgaat       960
     cattaaaaaa taaatcaacc aaagatcact aaacataaca tttaaaacaa gtgtcctaaa      1020
     agcccgctcc ccttaaaagc aatcgtcggt agggtatgca ggcaccaacc gctcgcaaaa      1080
     catcgacaag aattgattta gtttgaagtt ttctcaacca ctgaagagca gtcggtgttt      1140
     caagtgacac gactgcgata tgccctgttc ccatctcagt ggactgattt ctataaattc      1200
     gaatacatac atatatgtaa aacattttac tgctaccact gatttgaatt tgtaaacaaa      1260
     aataaaatgt atgctgaaat attaaaaaaa tatattataa catataatat taatatttat      1320
     atcataaccc aatagtaaat acgcccatat tcttagggta ccaagtttga aaagtggcaa      1380
     aagacaaaat attcttgatg cgccgaaatg aaataaacgc acacatgctc ccgtgtatga      1440
     gaatgcatga tcacgcatac atacaaagac gaattcaagc gcagggcagc cttcttcaaa      1500
     aagcgcctct ctgcgactga acgactgaac tcgtgcaatg agtgcgcgag cataaaaatg      1560
     agaataagaa tgagagagta aaaaacccga acgcacacga agtgcatgga cctgctgctg      1620
     tgagagcggt ggaccttccg cggtccgttt ttttgtgtcc aaatgcgtcg tatgaaatga      1680
     ccagtctata tgttgtatgg ttagtg                                           1706
//
ID   DNA7-1_LMi  repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-392
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2972-2972 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 7-bp long.
XX
SQ   Sequence 392 BP; 68 A; 116 C; 126 G; 82 T; 0 other;
     cacagagtaa catatacaga gaagcagccc accctaaacc actgtcctac gctcccctcg        60
     tagttccgta agatgctagc aggtgtcagg cggttcgctg gcttagggtg cctctcgcac       120
     gtcagagggt agcgtggagg ggaggctgag gggagagctc gtgccgcctg ccacgaggcc       180
     acggctgtgt ccggcttgcc ggcgtttgag gggaggtggt ggtgggggca gccgctacct       240
     gccgcctgct ctggccagtt taaagggctg cttctgaccg cagcgccatc atgggacatc       300
     ttacggaact gctggaaacc ctccctcccc gcacccctga gcgtaggacc gggcccttac       360
     ggaggtttcc cgtctgtata tatttgtctg tg                                     392
//
ID   DNA7-1_PBa  repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-405
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 601-601 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 7-bp long.
XX
SQ   Sequence 405 BP; 125 A; 76 C; 77 G; 126 T; 1 other;
     caccgacgag atactattaa agaccgacaa ccgtgggtaa attttcgtsa ccactaaagg        60
     ggccccgggg gcccggggat aattgaagaa cattgatatt atcgaccgtt ttgactgtac       120
     tgaggataac aaagggagga taacgtttat ttattactgt tattatgact gttattatgt       180
     tattatgacg gatttaattt taaattaata gttcgtaaaa ggaactatta atttaaaatt       240
     aaatccgtca taataacagt aataaataaa cgttatcctc cctttgttat cctcagtaca       300
     gtcaaaacgg tcgataatat caacgttctt caattatccc cgggcccctt agcggtcacg       360
     ctaactcccg taagattgtc ggtctttaat agtatctcgt cggtg                       405
//
ID   DNA7-2_CQ   repbase;    DNA;    INV; 418 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-418
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 77-77 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >91%
CC   identity. 7-bp TSDs. 22-bp TIRs.
XX
SQ   Sequence 418 BP; 123 A; 93 C; 97 G; 104 T; 1 other;
     cactgacgaa ctgacgtgcc accccataca tatttttgag aaaattctga ccgcaaattc        60
     kccagcgaac accaactcca tctaccttca ggttcgctga actaattctc tctcccacac       120
     gtgttttcga tattgcgact atgcttcaat ttgtaatctg cgtcgtttca aaaaagtatg       180
     cgctcagaac gattttggag cgcgctgttc gtttcggcga aagcgtgtgt cagtttatgc       240
     tgacttcaac aatacattgc atgtaaacat tggcgcgaag cgagagaaga gagctagtga       300
     agagagggaa gagagaaaaa tcggttgaca gattgttcgc tagaagcaaa aacgccaaac       360
     aagaagaaga caactgcggt caaaagtggt ttgctcgtgg cacgtcagtt cgtcagtg         418
//
ID   DNA7-2_LMi  repbase;    DNA;    INV; 1420 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 19.11, Created)
DT   21-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1420
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2895-2895 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. TSDs are 7-bp long.
XX
SQ   Sequence 1420 BP; 444 A; 276 C; 252 G; 448 T; 0 other;
     caaatagctt ataaagataa tagcggaaac tccgtggcat ttacatgcgt ttgtcaggcg        60
     acaccgctag cagtgccatc tgttggttcg agttgtaggc tatacttgcc ttgacatctg       120
     tgattccgta ttttatttcg ctgcgtacca aaattacttt gcaaggttta catttgttac       180
     gccatttaag atattatgtt agatgataat ttcttttaaa gtgtagggca gaagaaacta       240
     aagcaatcgt ctctgccatg aactgtgcaa cacctcggcg cttcatgatg tcaggcgaaa       300
     atctaagaaa aaatttccgt aagtaaaaaa atcaacattt tacaaatttt taacgaactg       360
     ttttcgatct atgaaaacaa atcaaattta gatagctctc atttcagacc actgaagatg       420
     ttttatattc agtgaaacga aacgcgtctg gtgaaaaacg atcgcactta ttgtagttgc       480
     gtagacggac aaataatacc cttcataatg tgtacagttt atttggatag aattcgaact       540
     gaaaataaca caatacatga cgtaagtttt aaccatatac atgaacgcag tttccatgag       600
     cagttaggca gcagaacgga aggcagtgca tcaggccaaa tactggaaat gacaacgaaa       660
     atgtaagaca ttattttaaa tttctgttta gccttgtgtt tcataaaata taatttttgc       720
     ttaaatacaa acagctgaca gtgaaggtat tgtgctgatg tttctaaagc ctcgtctacg       780
     ctttaaatga agggattcaa ataaaacttg ctgttataca tttgttgtta taatacatta       840
     accaccattt ttaaactaca cgcaatgaac aaattacatt tacccttggc tttacaaaat       900
     cttatttctg aaatctttct ccacaaagta gtctgggcat aatacatagc ttttattcaa       960
     atgctctggg cccttctttc tcaaaatttt atccaagtca gctcttcgct tacgaataac      1020
     ccactgcctg tatctataaa gaacttataa aaagggtaaa tcaaagcgtt aaagacactg      1080
     tttattaaaa gtaaacgatc tcagtaggcc taatagtagc ctccttaaac tatcatattt      1140
     agaattctct atttttcggg aacctgaaga aagatttcgg agtgcatcgc tgtttgtagt      1200
     tagctgttac agccgtatgt agcacataca ctccctcttc caaccatttc ctacttctat      1260
     aaagtacgcc gacgaatgat gtaagtgttc tgagtctcac agtgttaatc ggccgttcac      1320
     tcccagtttt agttcacaac tcacgccgct aggaggtgct cgggagcgct gtcgcacgtt      1380
     tcggcgaaga gtttccgcta ttatctttat aagctatttg                            1420
//
ID   DNA7-2_PBa  repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   21-MAY-2012 (Rel. 19.03, Created)
DT   21-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA7-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-251
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 602-602 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. TSDs are 7-bp long.
XX
SQ   Sequence 251 BP; 63 A; 61 C; 61 G; 66 T; 0 other;
     cagagagaag cctgagagtg gtcatggacg cgttttagct gtacccttat tcgcgtaggt        60
     aatgtgcacg tttttgtggt tctcttccgt gctagacgca agagtgataa agatggacag       120
     tcgtgtccat atcgtccgtc tttatcactc ttgcgtctag cacggaagag aaccacaaaa       180
     acgtgcacat tacctacgcg aataagggta cagctaaaac gcgtccatga ccactctcag       240
     gcttctctct g                                                            251
//
ID   DNA8-100B_AP repbase;    DNA;    INV; 501 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-100B_AP.
XX
NM   DNA8-100B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-501
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2037-2037 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 501 BP; 167 A; 78 C; 69 G; 187 T; 0 other;
     cagtgttcgg aacgttcact aaaaaaatga attcgttcac gttcagtgct taaaaaagga        60
     actcgttcac gttcaaattc atattttttt caaatgaaca cgttcacgtt cacgttcttt       120
     gaaaatatga atgcgttcat ttcgtcgttc atttaattta ttttatttta tttttatgta       180
     tcgtttaaat acgaatacaa aatcgtggaa atcataatat tattgttgtt ttatgtccag       240
     gcgtgcccac tggaatttca tgtattttat ttttataatt cgtaatatat tatatatcat       300
     aatagtatta tcaatcaata tttattaaat aataaataaa tttgaacgtc ttaaaaatcg       360
     ttcaaattca ttaaatatat aaaacgtcgt tcacgttcac gttctatttg aaaaaaacga       420
     gtgacgttca cgtatcgttc actaaatatg aacgtgaacg cgtgaacgag cgttcatgaa       480
     cgacgttctt tccaaacact g                                                 501
//
ID   DNA8-100_AP repbase;    DNA;    INV; 660 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-100_AP.
XX
NM   DNA8-100_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-660
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2038-2038 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 660 BP; 202 A; 129 C; 116 G; 213 T; 0 other;
     cagtgttcgg aacgttcact aaaaaaatga actcgttcac gttcacgttc agtccttaaa        60
     aaaggaactc gttcacgttc acgttcgtgt ttttttcaaa cgaacgcgtt cacgttcacg       120
     ttctttcaaa aaatgaacgc gttcattggg tcgttcattt attttttata catttttttt       180
     atgaatcatt tacctgctgt aaaggctcag tcaaacagag ggtgactttt tgtccggcaa       240
     tcaaaaaatg aatccggact ttttgtaccc ggacttttcg tccgccatgg tttatgggta       300
     cgcggaccgc ggcgggcaag cggtctttgt attattttac agtgcccgcg cgggcagccc       360
     gctttctgtt tgaccgagcc tttaatataa aagcctataa acatatacaa ctcaagccaa       420
     aaataaaaat actatttaga cttatatata atataattaa ttaatatatt ttataaatat       480
     atttattaaa gggtaaataa attgaacgtc ttaaaaatcg atcaagttcg ttaaaaatat       540
     aaacgtcgtt cacgttcacg ttctatttta ataaaacgag tgacgttcac gtatcgttca       600
     ctaaaaatga acgtgaacgc gtgaacgtgc gttcatgaac gacgttcttt ccaaacactg       660
//
ID   DNA8-101_AP repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-101_AP.
XX
NM   DNA8-101_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-567
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2039-2039 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 567 BP; 221 A; 45 C; 54 G; 247 T; 0 other;
     cagtgttggg aattatctag ataaaattat ttttttaatt atcttatcta gataaaaata        60
     attaaatcat ctaattatct catctagata aatgtaatgg ttatctgtgg taatttatct       120
     agataaataa tataattata agaatatttt taaatactga aatagccaat aatttacgag       180
     aatcgagtag tgattccaaa taccaatatt attatagtta aaaaaagaaa tatttactga       240
     aatattgtca gttttatttt gttattttat ttttattcaa gttgtattaa aaattaaaat       300
     tgtatattat tttagttgaa aaataacatt aaggatttat taattaataa atattaccta       360
     attagtaatt actaataaat tacattattt ataatataat ttaaaaacaa attatctatt       420
     ttttttatct agataaatgt atgtgtattt ttatctttat ctagataaaa aaaaatgatg       480
     ttatatttta tcttatctag ataaattttg aatgaattat ctgttatctt atccagatga       540
     ttttttggtt atcttttccc aacactg                                           567
//
ID   DNA8-102_AP repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-102_AP.
XX
NM   DNA8-102_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-155
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2040-2040 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 155 BP; 40 A; 34 C; 38 G; 43 T; 0 other;
     cattggcgca actagacatt tgaactaagg ggtgcttaag ctccaggttt ttttgtgact        60
     caataggacc taacacctaa agatttttta gggggtgcta attttgactt agggggtgct       120
     aaggacccaa agcacccccc ctagttgcgc caatg                                  155
//
ID   DNA8-103_AP repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-103_AP.
XX
NM   DNA8-103_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-270
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2041-2041 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 270 BP; 93 A; 65 C; 35 G; 76 T; 1 other;
     cagaggcggt ttgaatatat tatacttagt ggtgcaagac aatatataga cacccaccca        60
     ccccttttca tcatagaaat tataaatacg ctttcaacag tttcagctac gattatcatt       120
     tatcaaattt caatgattag gtacttcatt actttattaa acattaaaat taaacattgc       180
     ggtmagcaca tactcaacca agaccaccca cccacccacc taatattggt ggtgcagtgc       240
     accaaaaaca gtatactcaa accgcctctg                                        270
//
ID   DNA8-104_AP repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-104_AP.
XX
NM   DNA8-104_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-340
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2042-2042 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 340 BP; 114 A; 57 C; 68 G; 101 T; 0 other;
     cagaggtatt caaactgtgc gtcgcggctc ccaggggcgt cgcgagagtt gtcgaaggga        60
     gccgcgtcaa agcaccggaa accaaaatta atgtaggtca agtataatta atataaatat       120
     tatttataat cattaaagcg attatggaaa cgataatgaa acacattacc cgactatttg       180
     aagttttatt tctagtacta aagtcactgt tattatcacc catatattgg ctataatatt       240
     gtatccgtat tgtttcaatt ttttcataat aatttgggag ccgtaaaaat attgtgaaca       300
     cacaaaggag ccgcgggatg aaaaagtttg aatacctctg                             340
//
ID   DNA8-105_AP repbase;    DNA;    INV; 650 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-105_AP.
XX
NM   DNA8-105_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-650
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2043-2043 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 650 BP; 221 A; 83 C; 84 G; 259 T; 3 other;
     caaggctggg cattaatgag ttaaaacgtt aagttaattt taattaagtt aattaactcg        60
     ttactttttt tttcaaatta acttttaact taataagtta cttttttttc aagattaacg       120
     tgttaacttc aagttaattt tatttcaaaa atatctaaat taagttaatt ttcgtccgaa       180
     gaataatgca aatttttgaa tgtgttttta ctttgatgta tcattttaaa tttccccagt       240
     aattttcatg gacgtaaaga aaaacggaac ttttctcctt tacgggacac cccttttttt       300
     ggtttttttg gggggggact tagtcatttt ttgggtaaaa aaaatgttgg tgaaatcaga       360
     atttggcgca cgaanttant ttcgaagtta tagctaatcg aagttttcan tttatattat       420
     aaccagaaaa actatctaac aaaccatatt atgtgtctgg aatttttatt tttgcaaatt       480
     agcaaatttt aacttaacac taagttaagt tacttttttt ttaaatttaa cttttaactt       540
     aacgagttaa cgaaaaaaaa tacgagtaac ttttaactta acttaactta attattttaa       600
     aataacttaa cttaacgagt taaaaaaaat cgttaacttg cccagccttg                  650
//
ID   DNA8-106_AP repbase;    DNA;    INV; 1366 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-106_AP.
XX
NM   DNA8-106_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1366
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2044-2044 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1366 BP; 486 A; 206 C; 229 G; 443 T; 2 other;
     cagtggcgta tttaggaatt ttgatagggg gggggggatg aaatatataa taataggtac        60
     actcaataaa tacgaatata atatacattt ttaaaatccc ctaacttgtt gagattagtg       120
     tggatcaagg tgaaataaga attaacacaa attgtatagt acctaatagc gtttattata       180
     aattcatact aacgaaaatc ccgtgtttaa tacgataaac aaaaaaaata gctttataat       240
     acaaaatccc gttttctatt tttttggatg ctcagttcat cgataacctt atctggcatg       300
     attattgtat tgatcggtga cgtgcaaata aagccaacac attaagggtc cgtattacaa       360
     tagttaaact aatgttaaac cgcggaattc gactggtaaa atcagttggt taagcgtaac       420
     cgaggcaggg actggaacct tgatgatttt tacggttccg gttcctattc ggttcccagt       480
     aaaactaaaa tttcggtttc ggttcctatt cggttcccag aaaaactaan atttaggttt       540
     cggtttcttt tcggttctta aaaaataaaa aaattgttac ctgatttggt tttttactta       600
     tgtaaaaaaa tgtgtcaagt aaaagtatcg gttccggtaa ggttccggtt tttaaattaa       660
     tttaaataag ggttccggtg aggttccggt attaaaatta atttaaataa gggtttcggt       720
     gaggttccgg tccctgaacc gaggtttaaa ctatgattgt aaaacgggcc ctaagtggct       780
     aagtngctaa gtcggttata ataaacaaag tatataataa ttactattta atttatagtt       840
     attattcaat attagatagg aaaattgata aaatatttac ttctgtcata ctatttatta       900
     agtattactt aatacttaat aaaaacttga aaaacatcgt tcagttgtat agcagttgat       960
     acaggcaaag tacaaaatat tttcaagagt tcatgaatat ttggataaaa ctctttatca      1020
     caaacatcta aagcatgtaa cccagaggtg aatacaatgt tttcagtcac taaaaataaa      1080
     cccatgccct atggtaaatc tacagtcttc atggtaattt tgttttattt accgaccatt      1140
     tatcgggttt attataaaca ctcatgcatg aaaaataatt cgcagaaaat tcaaaaatac      1200
     agtataccat accaccatag aggtatatgt ttttcagata tacctactta aaacttaaaa      1260
     gtagtatcat attgagaaat acagaaaata agtaaactta actttacaaa aaaaaaaggt      1320
     caagggggga tctatccccc atatcccccc cgtaaatacg ccactg                     1366
//
ID   DNA8-107_AP repbase;    DNA;    INV; 1026 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-107_AP.
XX
NM   DNA8-107_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1026
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2045-2045 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.  It contains a piggyBac-like insertions (pos. 123-679)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1026 BP; 348 A; 159 C; 164 G; 355 T; 0 other;
     cagtgccgta gccagggggt gggcactggg ggcacgtgcc cccccccgaa atttttttta        60
     gcttgtttta tattatatta tatgtttgat aaaaattaaa agttaaggct gtcgaagtga       120
     accattttga aggggtcgga tttaggaaat attgtacatc catcgttagt actatatcta       180
     tgtgtgtagt gactgatcat tagtgtgtgc gagttccccg aacgctttat gtaatttaag       240
     ataaacgacg gctaagattc ttgaacccca gtaaagtaca tacgcgcagt cacgtcacta       300
     tattttgtga taaaaaaatg ttcaacttac atgtgccaca aaactcccaa aaagtggaag       360
     acaaattcac ccagtaccaa aagccctttt ggctatttta attttgaaaa catatatttg       420
     aattccttaa tctcttttct agattatgta ggaaatggat ttatgatctg tagtattgtt       480
     taattagtat tatagtacca gagtaatttt cttttttttt tttcaaaatt cacttttact       540
     tttgaattac taaaaaaaaa aaaatcgctt ccaacaaaac acacaaaaag cggagaaatt       600
     gttatgtttt tttcgaaatt aaaattggat ttctggaagt atattttttt ccgcttattg       660
     atctaattgc acgaaaaaac taccagcttt caacagtcct aatatagtct tgtatttttg       720
     ttagtaaatt ttaataatat tcgaaccaaa aatggaatgt tttgtttaca acacattttg       780
     atataatgat aataatattg atgaatacat taacctatgg tttacaataa tattaataca       840
     ttgttatatt aaaatgtagc caatgtaggt accatacttg ttaacataaa tataatatag       900
     tcataaaacg agtagtagat acactttatg aacaaagggg tcataattag atattctagc       960
     atttcaaagg ctagagaaaa aaaattaagt gccccccccc aacatttttt tctggctacg      1020
     gcactg                                                                 1026
//
ID   DNA8-108_AP repbase;    DNA;    INV; 705 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-108_AP.
XX
NM   DNA8-108_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-705
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2046-2046 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.  It contains a piggyBac-like insertions (pos. 123-679)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 705 BP; 263 A; 105 C; 94 G; 242 T; 1 other;
     cataggcgtg cgcagacttt tttcgcaggg tatgccggta tttttaaaca tacctagctc        60
     aatacaaaaa ataactcccc aaaaactctt aataggtaca aataacttgc catataatgc       120
     gaaaagaaat taacatgcat tttatttagc ttatttattg gttttagata ttttaatttg       180
     aaaagtttgt actgtgattt cattccaata aagtaacagt ataaaaacct acagacattt       240
     gatcatatta taatatataa atataataat gacaaaaaat gataatctaa ttaatcgaaa       300
     ttattttatt tttgatagta tgaaaataag caataccgca ggggcctgaa tgttctggtg       360
     acaaaacccg caattctcac gaaaatngtg gattttgatt tcaactatat tattatgagt       420
     tagcaatcta ttttattatt tataggtacc tgtggtgatt atgaaaatat aattatgaaa       480
     tctaattaat atttgatttc gtctcaactc ccaatatttt attataagaa aataatataa       540
     aaaaataatc aaaatattta aattcttgaa ctaagattct atgaactatg ttagttcatg       600
     attctaattt ataatcaaaa catttacaac taaaaactat atggttatga taactctgca       660
     ggggatgcca tggcataccc ggcatccccc ctgcgcacgc ctatg                       705
//
ID   DNA8-109_AP repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-109_AP.
XX
NM   DNA8-109_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-674
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2047-2047 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.  It contains a piggyBac-like insertions (pos. 123-679)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 674 BP; 239 A; 81 C; 85 G; 268 T; 1 other;
     tagggaccgg atttatatgc aaatgcatat acgtattgga ataagctttt tgaaatctga        60
     tgagaattgt ctccgattta gatcattctt attaaaataa cacgaactgt attttgcata       120
     ttttgcatat ttcaacgttt ttacctatta aatacatatt taatgcatat ttgtaggttt       180
     atagtgcata ttattattta tagcacatat atttgttttt cgtcgtattt tcacgttcac       240
     agccacataa tatcgataat attacgacca gtcattattg ccaaaaaaag atgatataca       300
     taaatataat atacatatat atgtatatat tattataata ttaatataaa taaattcgtt       360
     gttcctataa tagagttcaa gtgttcgacg gaagccgatc agggctaata ttttatagat       420
     tgaagataaa taacgttaaa tggtgaaraa cttagtgaag atgacaaaaa tatacttttt       480
     tatactatta aaacccttat atacctcttt tattacttaa ttaattaata cttatttttt       540
     acataatttt aaataaaatg ttttcgattc aattttaagt gcatatttaa aaataaatgc       600
     atattttgta gcatattaga gcatttttag aagcatattt tgaggtcttt ttgtgcatat       660
     aaatccggtc tcta                                                         674
//
ID   DNA8-10_AP  repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-10_AP.
XX
NM   DNA8-10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-244
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1752-1752 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 244 BP; 66 A; 46 C; 43 G; 89 T; 0 other;
     catgacaaaa taaataggta tgctatcaac ttcgtgatac gcaactgtgt gttctcccac        60
     cacaaaaact acgtcatccg ttctccgata ttatatacca ttattattat atttattatt       120
     attattatta ttatttctgc tggtgagaac ggcttacgtc acagttcttg gcgaagttcg       180
     ggaggggtgc gcgttctcga ccaatattag ttatgttgat agcataccta tttattttgt       240
     catg                                                                    244
//
ID   DNA8-10_CQ  repbase;    DNA;    INV; 726 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-726
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 87-87 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93% identity.
CC   8-bp TSD. 15-bp TIRs.
XX
SQ   Sequence 726 BP; 232 A; 148 C; 136 G; 210 T; 0 other;
     ctgggtgcag aatagttgtc cgcaaagcgg cctcaattta gaactgtcaa agcggaacca        60
     atttactgtt cgcaaaatga taccaagaag tggcaagtat tgtgatcgat ctataattta       120
     ttttgtcagg aataaaaaaa agtcgatgcg tcgagctatt gaggtattcg aagtcaaaac       180
     atcttaagaa gagggttgaa atcgagattg gcataattcg tcgctaacat ttcaaaatcg       240
     ctatgtctca cgcaaaacct atgtttatga cgctttttga aatgttagcg acgaattatc       300
     aataactatg aatggcacct gccaaataat attggataat cttactccga tattatcact       360
     gcacatcaaa gatacataat ctcggaactt ccattcggtt gctcttctga ttcacgaaat       420
     tccacccact tctgacgaca atttttcgtc acgtggaaaa caaaaaaggc ctcttttggc       480
     cgcccatcgt ttagtctacg aacgaaaaaa gtgcgaagca cttaattttt catcgaaaac       540
     atcaacatca acagatccaa aatgtttcaa aacaattcac ttcagcagca aaaaatatgt       600
     cacgcttgag cttgaacata gccttctact ttgtttatgt ttacagctgt agtgcagttg       660
     tattagtggg gagcagtggg gagctttcga aaatcacgtt acgcattctg tcttttcagc       720
     acccag                                                                  726
//
ID   DNA8-10_LMi repbase;    DNA;    INV; 1066 BP.
XX
AC   .
XX
DT   20-JUN-2014 (Rel. 19.11, Created)
DT   20-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1066
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2900-2900 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1066 BP; 383 A; 162 C; 169 G; 352 T; 0 other;
     tagagctacg tgaaattcgt atatgctata aatgctaaat aagtaaaagt caatgacatt        60
     tattaaaatt agttatttca gcagaattta ttgctcaatt gataaaacat cttaatatac       120
     aggcaacaga atgttactga ttataatata tctacaatta tatgtgaaat caccagataa       180
     agtgaccaaa agaccgaaaa ttaagattgg taatgagtac ttgttgtgta actacaatgt       240
     tctgttaaac tttccaagac acatttgtgc actaccgagc taccatagag tacatgagat       300
     acctttttgt gatatttaac atcagtgaaa ggccaaaggt atttcattta tacctggagg       360
     tataagaaaa gaagggaaga taagaaaaaa acaccaatct ttactagaag acttcgaacg       420
     gtatattatc ttgctttgtt gcttgtgaat gatgttttat agtgtagaat ttttgaattt       480
     catcctaatc aatgttttct ttctccttta tttgcttcat tacctaaaca gataaaaatt       540
     caaaaacttt gcactaaaca cagaactatt tgttagaaaa atggcaaata tataccaatt       600
     acttaaattt tggaatggct gctatttttc ctattctcaa tttataaaac tgaactgcat       660
     tttaaccatt atgtaagttg ctttcatctg caccttgagg tacctacttg caatagtggc       720
     ctaaacaaat ttgtattgac aatgataacg gtcacagaag cctatactta cattgactga       780
     agtgtgttaa aaatggctac gcatgaactg agttttaggc gtgacgcaat gactatctga       840
     aataaggttc atggctgaaa ttccttggtg tcacttttgc aatgtgaaac aactgggagg       900
     acgaaaatgt agaaaacaca tttaaagtgc cagttactga tatgtcaaag aattaaaaaa       960
     ccgtagctca tttaaatgtt taaacacgtt taaaactata aatgctaaat ctgaatttca      1020
     aaatgctaaa ttttcaaagt ttatttgcta atttcacgta gctcta                     1066
//
ID   DNA8-110_AP repbase;    DNA;    INV; 689 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-110_AP.
XX
NM   DNA8-110_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-689
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2048-2048 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 689 BP; 214 A; 111 C; 110 G; 253 T; 1 other;
     gggcggttcc attttcctcc aaaaacgaga taccgttttc ctccactgtc cattttcctc        60
     cacaaaaaaa aaaggttggt ttccattttc ctccaaatta ttttagactg taattttgtc       120
     tattttcctc caatatttta gccagtgttg tagtattacg ttccgtntta taaatatata       180
     gagtaaagct aggatcacat tttgcgctta tcggttgatg attacactct ggtatcggct       240
     atctatatca gctatcgatt aagcctaata aagatacgct catataacat tcgggcatat       300
     acgtatatac ttatttatgt tatattgtgt atcagttgtc acttattatt atgattacac       360
     acaaaacgtt tgttaattcg tgatggttac aaatattttt tagcatatga gttaaaatct       420
     ggattatcac gttggcgatg ttgtttgact acttgtcaag cagttatatt atacactaat       480
     aaaactgatg aaatagtagc cgatgaatta cacaaaaatg tacatccaaa tcatttgccg       540
     atcaagccta aaaaaaaata aatcgatttt ttttgctatg cataaattat ttgtattaac       600
     tattttatta ttttattcat tatttattgg aggaaaatgg acagtggagg aaaacggtat       660
     ctcgtttttg gaggaaaatg gctacggcc                                         689
//
ID   DNA8-111_AP repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-111_AP.
XX
NM   DNA8-111_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-616
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2049-2049 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 616 BP; 217 A; 90 C; 76 G; 233 T; 0 other;
     tagggctgac ggtattgaaa ataattttcg gtattacggt attgatttca ataccgatat        60
     ggtacggtat accgaaataa taaataaaat ctaactagta tcgatatttt ttactttaat       120
     attgtttcac attaatatta tttcacatta tactttatta tatactataa tatataatat       180
     tataatctat attattgcca ttgatactag aaaacagcac taaaacttgc actaataatt       240
     attttatact taaaattaag ttaatttatg taaattcttg tactttgctt caattttttg       300
     aaaaacataa gtaggtaact agtaaaacta gtggattttt ttaaactgtc cctacctatc       360
     ggctatcaac atctattacc tataaaacaa catgattaca tgaataggta ttttatatct       420
     ttatttttct acactgctac agtataggtt taaactttaa aagtaatcaa tttgaagcta       480
     agtaactcac ctaaatggta ggtaggtact caagttgttt accgtttacg gtataccgtt       540
     tagacggttt tttacggtat accgtttacc aaaataattt taaaataccg gtataccgaa       600
     aataccgtca gcccta                                                       616
//
ID   DNA8-112_AP repbase;    DNA;    INV; 1310 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-112_AP.
XX
NM   DNA8-112_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1310
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2050-2050 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1310 BP; 494 A; 160 C; 154 G; 501 T; 1 other;
     cagtgttgtg ctttagataa atttatctag atatnttatc tagataaaaa ataaaattga        60
     catctaattt ttatctagat aaaaattata gccatctaga taaatttatc tagataattc       120
     acaaaatcca tagctaataa ttagtaataa ctattttaca atattatcat tcaatataaa       180
     atagataact taataagaaa tctcatttgt attacttgca aaaattggtt ctaaaatagt       240
     tttacatagc atttattatt aattatgaat aatgcacaga tataaactac tattatagta       300
     tattataact gttgaataat gacgatttat tatgtcaata tgcataggag atgcgaatta       360
     tttatataat tttataatat ggcccatacg gggaagtctc acgcccgtat acgatttatg       420
     attttacgaa cgccgaaaga gcctttacaa aaattagaac tagagatacc cctccataca       480
     tagagtatac tctatgccac cataggtcct acgggtaaac agggtttaac atcatgttgg       540
     tttacgggct cgttccctat gttcagactt cagatcatag gtaaacgtaa accgaatatt       600
     atagaatatt atattattat attatataaa aatatattta aatatatata ttattcatat       660
     attctgtgtt aaaactatgg aatatagcat ttgtgtaata taccagtaaa aagggaaatg       720
     gttactttgt actcatatag ttatatgata ttcaaaattt ctttaaattt actaaataat       780
     ttaataaata tttattaggc ttaaacttta aatgtataac tatttaataa gaattacaat       840
     aacaccacag tttctacagt acaaattaag taaatttgat atgtcaatta ttagagcctg       900
     ggtcttaagt tttcaccaag tgtacgcaat tttatgtttg atgggagtga aaataaagac       960
     ttcattaaat acagatgcgt atcacaaaat aacttttttt ttgcattatt cagaatcttt      1020
     ttttatgttt gggataatat gatgttacca acttatcttt agcatgcttg gaatattgtc      1080
     taattatgta aatattgtaa taaaaataca aatttatttt aattttcaat tattagtata      1140
     aatttaaatt ttgaggtaat accttatata aatatctaga taaaaattat tttatctatc      1200
     tatatctaga taaattcaat ttctacagta tctatctata tctagataat tttaaattca      1260
     gatatcttat ctatatctag ataatttttt tttatctaag cacaacactg                 1310
//
ID   DNA8-113_AP repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-113_AP.
XX
NM   DNA8-113_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-176
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2051-2051 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 176 BP; 61 A; 32 C; 33 G; 50 T; 0 other;
     cataggcgca actagacctc taaaacgtgg ggtgctataa tatttcatat tttaaaaaca        60
     taaaatttat ggtatttcac tataataatg atagttagac ctaaaaaaac aaggggtgct       120
     aaattagaac ttgggggtgc taaagaccct tttgcacccc cctagttgcg ccaatg           176
//
ID   DNA8-11B_AP repbase;    DNA;    INV; 483 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-11B_AP.
XX
NM   DNA8-11B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-483
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1962-1962 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 483 BP; 113 A; 80 C; 80 G; 209 T; 1 other;
     cagggcttga aaccgattga aaaaatttcg gtttcggttt cgattttgta ataccggttt        60
     ccaatttttt ccgattttgt tttcggtttc agtttttaaa cggtttatac cggtttctaa       120
     aatcggtttc aaggcctgga ctatttacgt tcattcttag tttattaatt tntttgaatc       180
     gccggatcga gcgttcgaat cgccttttgt gtaaagtaaa ctttccaaaa tgttcaagat       240
     accaacgatt ttaaaaaaaa taccgttttt taaattatat tttcggtttc ggttttaaat       300
     tataataccg gtatccaatt ttttccggtt tcggttttga atttaatacc ggtttccaat       360
     ttttttcggt ttcggttttg aatttaatac cggtttccaa ttatctcgcg tttcgttttt       420
     gatttacttt tcggtttttt tcacggttta taccggtttt ataaataccg atttcaagcc       480
     ctg                                                                     483
//
ID   DNA8-11B_LMi repbase;    DNA;    INV; 1459 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 19.11, Created)
DT   24-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-11B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1459
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2901-2901 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1459 BP; 540 A; 225 C; 215 G; 479 T; 0 other;
     gggaatagtc aagaatacga tacaacacgt cggctttgac caatgacgtc atatacgaag        60
     caaagatatg gaagtaataa catttgaaca tttgacgtct atcaagaaat atatcgatta       120
     ttaatacacc aaagataata ctataaccaa ctttacagat aaataattat tagctcgttt       180
     aagaaatatg tataataaat gaaacacatc atatctatta cattattgta tttttattta       240
     ttaaaaaaca gtgaagcatg tttaaattat ttaaaaatga ataataaatg aaaagtattg       300
     atttttttag aggtgataca gttccaagtc tagcgtctga aacaaaaaca aaaaaagaag       360
     ttacaacatt acgtactaga aatatacttt tttattatta tattaacaaa tactactaca       420
     aatgtgtgcg atttcgttaa aagctacatg tacaataatg ttcgagtaaa attgtagtgt       480
     aataatatat gtttctgctc atatgtcgct atttgaaaag atatctgtat cgtattcttg       540
     acttgagcag ggggaggtca agtctagttt acgatacaat ttttaaatgt taccaaatta       600
     cgctatttcg tgagatatct gtatcgtatt ctatactcga tcaggaaaag ttaagtaaaa       660
     aatttcagcg gtaaaatttt acgacgcttc tcgccgggct ccagtgctta tgttggcaac       720
     agatgaacaa tgaagtgtag aattgcgtta atatttttca cgagctacag agtaaatgtt       780
     attgctgctc gtttcactcg cagcaaaatt aatactgtac ctgctctatg gttgacaggt       840
     tcttgtatgt acccttgtcc gttcagaaaa aaataatttt cgttttaatt gaagttgtca       900
     cgaaaaaata tttattggtc atctgagttg ccgtcattac cattggtgcc aacataacca       960
     ctgcagccca gcgagaagcg tcgtaaaatt taaccaattt cagcaattaa tacaaaaatt      1020
     gtaaaaattt agttagagac accatgtctt caccaatcat taatgaaagt tgatctttat      1080
     taattttttc attatcatcc attcctaaaa agatcgataa aataattaaa tacggataaa      1140
     actcaataat gaattatata aattcacata aaataagaac gaacaataaa ctatattact      1200
     tactgtcgat tgtaagcaat caatttctca gtgaaaatat ttatccttaa attataacaa      1260
     aattgttgaa tcacttcgat caatacagaa tcgagatatc aattgtctat ctttaatgta      1320
     atcaacgacc gtatgcaaat agttccatat ctttgataca aaaaagttaa tatcatcttc      1380
     atatatatac ataaacatct ttgactgatg acgtcattgg tcaaagccga cgggttgtat      1440
     cgtatactag acttgaccc                                                   1459
//
ID   DNA8-11_AP  repbase;    DNA;    INV; 667 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   16-AUG-2021 (Rel. 26.08, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-11_AP.
XX
NM   DNA8-11_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-667
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1753-1753 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 667 BP; 179 A; 93 C; 115 G; 280 T; 0 other;
     cagggcttga aaccggtatt aagaaatttc ggtttcggtt tcgattttgt ataccggttt        60
     cgaaatttta cggtttcggt ttcgacttag caataccggt attaagaaat ttcggtttcg       120
     gtttcggttt tgtataccgg tttctaaagt attttcaggg ggctatgtcg tctatacaat       180
     tatcattctt tgttccgtat tgtcaattgt catatatagt atttgctagt aactttaatt       240
     tatgtcatta ctatttataa agcaactaat aattttgcga ataatgaaat gtttatcaac       300
     aaaattaatt atgatctcaa ttttattatg attattaatt atgcgtatta atggaattta       360
     cgtatttaaa aacacgtcag ttaaaaaaaa aataacggtt tccaattttt tcagatttcg       420
     gttttgaatt taataccggt ttccaatttt ttacggtttc gattttgaat ttaataccgg       480
     tatccaattt atttcggttt cggttttaaa ttataatacc ggtatccaat tttttccggt       540
     ttcggttttg actttaatac cggtatccga tttttttcgg tttcggtttt gaaacggttt       600
     cggtttcggt tttaaaacgg tttataacgg tttctgaaat cggttttgaa aacggtttca       660
     agccctg                                                                 667
//
ID   DNA8-11_CQ  repbase;    DNA;    INV; 1308 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-11_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1308
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 88-88 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95% identity.
CC   8-bp TSD. ~110-bp TIRs.
XX
SQ   Sequence 1308 BP; 478 A; 193 C; 191 G; 446 T; 0 other;
     tagagcgtcc aatttcccgg ggttacaaaa ttcccgggaa acgggaaatt ttcaacaaat        60
     ttcccgggaa atcccgggaa ttcccgggaa atttgaaatt taacgaaaat tattctaatc       120
     ctgtttctga ttaatctttt gcaacgaaat tgtatagaac agcaacttta atggtcaaaa       180
     tgagtgtgag gatcaattaa tggcttgact gcttgtaaaa aatcatgcaa ctttgagaaa       240
     atatataaac tttctaattt ttaaatcttt caaatcgtcc caaatgaaag aaaatattat       300
     tagtattttt gttgagaagg atttttttaa atcaaagtgt ttggacagtg aaaatctatg       360
     ctccacaacc ataaaattgc ttttaaattt gtctcagtga ccgttaaaat aaaaaaaaaa       420
     aacaaaaaat tcaacttgtg aataaataaa taatcattga atttacctta aaaatctaat       480
     ttctagcgct ttttaacttg aaacactatt ttttcaactt gaaaatttga tacgaagttg       540
     ttttttaatg gtttttcatg gttttatgat atgattttag ttatatggta ttcagcctaa       600
     taaatcaatt agattaaaat aattttgagt atttaaaagt ggttgaaatt caacgatatt       660
     ttttcatata taaccctctt acgcccttgg tagctcacgt gcttcataaa tttataactt       720
     caatctgtaa tttctcgaat acttagaaac aaattcttct cacacaaacc tttttttaaa       780
     atttaattat atcagttcaa tttccatcca acatgttcaa ggtaaaaaaa agtcaaacaa       840
     atctcaatgt tgatcttggc cggaagatgt aaatatctta ttttcaaatg atattacaaa       900
     aaaaaaacat taaaaaaggt tgtcaaaaat aaaatagttt atattcattc cataacagcg       960
     taagttttgt tgtccaacat ataagcaaac aatattccta gtggtgaatg cttcagaaat      1020
     aaatattatc tgaattaaac cttgacatga aatttacaga caagctgatt agttcaatat      1080
     gaacagtaga tggaaataaa taaaatcaaa tcaggttctc caattattat tttttgtata      1140
     atttcaaaac attggtgcca aaaaggtagg aaaatgtata cttctgcttg tatttcggga      1200
     attcccggga aatttacaaa tttcccggga aacgggaaat atttttttcc gggaaatccc      1260
     gggaattccc gggaattttt ttcccgggac gggaaattgg acgctcta                   1308
//
ID   DNA8-11_LMi repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 19.11, Created)
DT   24-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1303
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2902-2902 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1303 BP; 459 A; 189 C; 213 G; 440 T; 2 other;
     gggaatagtc aagaatacga tacaacacgt cggctttgac cagtgacgtc atatacgaag        60
     caaagatatg gaagtaataa catttgaata tctgacgtca atcaagaaat atatcgatta       120
     ttaatatacc aaagataata ctataaacga ctttacagat atataattat tagctagttt       180
     aagaaatatg tataataaat gaaacacatc atatctatta cattatttta tttttattta       240
     ttgaaaaaaa cagtgaaaca tgtttaaata atttaacaat ttgtaataaa tgaaaagtat       300
     agatttttta gaggtgatac acttccaagt ctggcgtctg aaacaaaaaa aagaaagtta       360
     caacattacg tacaagaaat atactttttt attattatat taacaaatac tactacaaat       420
     gtgtgcgatt tcgttaaaag ctacatgtac aataatgttc gcgtaaaatt gtagcataat       480
     aatatatgtt tctgttcata tgtcgmtatt tgaaaagata tctatatcgt attctgactt       540
     gagcaaggtc aagtctagtt tatacaattt ttaaatgaac catatgacgc tatatgagat       600
     atctgtatcg tattcttgac ttgagcaggg ggaggtcaag tctagtttac gatacaattt       660
     ttaaatgata ccatatgacg ctatttcatg agatatctgt atcgtattct tgacttgagc       720
     agggggaggt caagtctagt ttacgataca atttttaaat gataccatat gacgctattt       780
     catgagatat ctgtatcgta ttcttgactt gagcaggggg aggtcagtct agtttacgat       840
     acaattttta aatgatacca tatgacgcta tttcatgaga tatctgtatc gtattcttga       900
     cttgagcagg gggaggtcaa gtctagttta cgatacaatt tttaaatgat accaaatgtc       960
     gctatttcat gagatatctg tatcgtattc tttactcgat cgggggaggt taagtaaaga      1020
     atccaataca ggtgacaact gcgaagtcat tagttgattt taggctatct aatacattgt      1080
     gtataaattt tttaattatg acaaactcgt ccaatccgtt caaccagaac gaatcaagat      1140
     atcaattgtc tttctttaat tacatcaacg accatatgca aataattcca tatctttgat      1200
     acaaaaagaa ttaatatcat ctwtatatat atacataaac atctttgact aatgacgtca      1260
     ttggtcaaag ccgacgggtt gtatcgtata ctagacttga ccc                        1303
//
ID   DNA8-12_AP  repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-12_AP.
XX
NM   DNA8-12_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-208
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1754-1754 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 208 BP; 60 A; 54 C; 46 G; 47 T; 1 other;
     cagtggcgtc atttggggtg gggcaactgg ggcatntgcc ccagtctagt atttacatca        60
     accttaagtc ggcacattta ccacacgccc ccccccaccc gttaaccact atggcactat       120
     gctacgagaa tctgagtgaa aaaaattttg agtcggaaaa gccgtgaaaa attgccctag       180
     tctaatgaaa actgaaatga cgccactg                                          208
//
ID   DNA8-12_CQ  repbase;    DNA;    INV; 1692 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-12_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1692
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 89-89 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95% identity.
CC   8-bp TSD. ~110-bp TIRs.
XX
SQ   Sequence 1692 BP; 609 A; 270 C; 269 G; 544 T; 0 other;
     caaggggttt ccagcatcaa ggattactga ccagtctaaa tggaattacc aggattactg        60
     gcaatatgtc atgaattact ttgatttccc agaattactt gggatttcca gaaaccacgc       120
     agaattgctc aaatttataa aaaataactt ggaattactg cctagcttcc agcatattga       180
     gaaaagtctt tggaattgga tcgaatgaca gctgtcaaac gcacaaaacc acgtgcttgg       240
     caatagtacg tccatcccgg gattcccggc acaaaattcc cgggattttt atatgttgta       300
     cggggaattc ccggaattaa acaaaaatct taatttggcc tggaaattac attagtatta       360
     caattaataa gtttaaactt ttctaaaatt ttacataaat tggtaccatt ttatttgttg       420
     tcatttttgt tttttagaca tcttaaacca atttttaagc tgttttagtc atgtcatata       480
     gaaataaata aaaaataaat atttataaga tacttattta atttgaatta gaaatgtggt       540
     gcatataaaa ttcaaagcac aacagagaac agcaaaaatt tgtttaagct atcttaaaac       600
     tgctatcctt gtttagattg atattattag tattgagcta attctataaa tttaaagctt       660
     gaaaaacata acaaatataa agaaaacata gattttatga ctttttcaaa aacttcccgg       720
     gaataaataa atatttttcc cgttttccgg gaaactcaaa acctgggaaa attggacgtc       780
     ctgcttggaa atcatcgaac aattgggtaa atatcaacat cagtttgaca actgattttg       840
     gcgtttgagt gcatttaaaa ttcaaagcac aacaaagaac aaaaaaatct ttaaaactat       900
     ctaaaagtgc tatcctatta atagtattga gctaaaagta tgattttaaa aacataacaa       960
     atataaagaa aacatagatt ttatgacgtt ttcaaaaatt tcccgggaat aaaaaatata      1020
     ttttttccgt tttccgggaa acttggacgc cctacttgga aatcgtcgaa taatggggta      1080
     aatatcaaca tcagtttgac aactgatttt gacgtttgag ttgtttttca tccgaataca      1140
     tttgaattag agagcatcca aatttgcgga cattccgaat ccgctctgta cttcttacaa      1200
     ccataaaagg catcaaggaa aagcaaaatg cattctgccg atttacttga attgatggga      1260
     aatacacgaa ttactgagta actatggaat tactcgaatt actacggaat tactaggtaa      1320
     ttccagaatt acaggaatta ctgcagaatt gcggagtaat tctggaatta ctgaattact      1380
     tactcaaaat ccgaatgatc ccgtactagc tataactttg gattcttaca tgaaaattaa      1440
     taggcaataa atagaatcat aaaaggttta tcgaaattat ctttttaaca gttatttttc      1500
     aatattttat tattttctga agtatgtttt cacaaacaag aatcatggaa ttaccaggat      1560
     tactgggatt attaggaatt accaggatta ctctggaatt actcagtaaa tccggaatta      1620
     cagaattact tgctcaaatt ccaagtaatt ccggattagt gaccagtctg acacgatgct      1680
     ggaaacccct tg                                                          1692
//
ID   DNA8-12_LMi repbase;    DNA;    INV; 329 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.11, Created)
DT   03-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-329
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2903-2903 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 329 BP; 95 A; 68 C; 72 G; 94 T; 0 other;
     ggctaaactg cagagtctgt tgcccacgcg ctgcaaatgt tggcgacact acagaatatc        60
     tatgtataca ccacagcagt caaccatagg gcaggtatag catgttttat ttattttatg       120
     atctgtgcga aacagtgatc attttaactg aaagttaggt taggtatagg ttaaacaaga       180
     agtttttttt ttagtatgtg agggcgcgta gcgcccgaat ctccggttca gaaacactca       240
     aattattgtt ttcccatagt cgctcgcggc aaagttgcca acataagcgc catgctaata       300
     acatgggcaa cagacactgc agttttacc                                         329
//
ID   DNA8-13_AP  repbase;    DNA;    INV; 788 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-13_AP.
XX
NM   DNA8-13_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-788
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1755-1755 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 788 BP; 230 A; 167 C; 124 G; 266 T; 1 other;
     caggggtgga taggcccata gggaaaaagg gattttccct gtgggccccc gtctatgttt        60
     gtggcctggg ggcccactcg ggtctacaca ttgttttttt gcagaataaa atattcacca       120
     aataggaata gtttaaattt aaaactattc atttttttat ataaattatt antacttagg       180
     tacctactgt tatttttaac aatataataa taataccacg actagtcaag aatttgctta       240
     cggatcttta acatagtatt ttaaattttt atcgttaatc gaagaccgaa atatcctcgt       300
     atgtttccct aacccccccc cccccatatt gtgtttttgc aatttttttt tggccgatat       360
     ttagtacgga atttgtacga atttgtacga taagaccctc aatttgtaca aatttttttt       420
     cgaagttata cgagaatttg tgtgaggggg ctatagaaac gcttctccac cccccccccc       480
     cttatttcca aaactactta tttatgtgaa acttctatgc agatatttag tacggaattt       540
     gtacgaattt gtacgacctt acgcgaaatt tttcaaaaaa ccccttacaa ccgaaaaaag       600
     cattttcctc atatgccgtt tccccagccc ccaccaaact aaaaatacgt tttcgcacga       660
     aacattttat ttataggtaa aggtgttaga ttgaatatct aatgcgagcg aagcgaccaa       720
     attttttttc agtttggggg ccccttcaaa tatttccctg taacataaat actacctatc       780
     cacccctg                                                                788
//
ID   DNA8-13_CQ  repbase;    DNA;    INV; 1159 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-13_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1159
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 90-90 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95% identity.
CC   8-bp TSD. ~300-bp TIRs.
XX
SQ   Sequence 1159 BP; 404 A; 172 C; 166 G; 417 T; 0 other;
     tagagcgtcc aatttcccgg ggttacaaat ttcccgggaa acgggaaatt ttcagccaat        60
     ttcccgggaa atcccgggaa ttcccgggaa attttaaatt tattgaaaat tgttatgatc       120
     ttggttttaa ttaatattat gcaacaaaat tgtataggac atcaacatta atggtttaaa       180
     taagtgtgaa gatcaattaa cagcttgact gcatgtaaaa aatcattcaa ctacaagaaa       240
     atgtattttg gtattttttg atgagaaatt ttaaacttgc ctctgtgacc agtttattga       300
     aatgagaaaa aaaaaacatg cagaaattat gtttttcatg acaaatactg gtttcagctc       360
     ttgaacaaat ggtaaagctt tttagtgttg gttttactcc aaacaaccca atgttttcaa       420
     atatttgaag caagctttga atatattttt gcattttttg agaacaaaca atagaaagta       480
     atttttcaat gatttttttt gtattattat gcaacatgat ttaaattata cgataaatta       540
     acatcattcc acaaaaagtc ttctattttt tcacatttaa ccctctaaca cctgtagttg       600
     caccagtgct ccataattct tttacttcaa attgtaattt ctttagtact aggtattcaa       660
     ccaattgaat taattctttt tgcacaaatt cgattttcat ctcatttgat catggtaaac       720
     aaaaacgtaa aaaaatctca attttaattt ggaggtaagg agttaatatt gttttgatga       780
     aataacatca atctgttaaa agcttaccta attgtaataa tttaatactc attaagcaag       840
     atctattccc agttgcttca aaaattaata ttatcagaaa taattctgat atcataattt       900
     ctgataatct gattaattat atataaacca aacaatacat ttaattgaac aaaatcatgt       960
     tgagtttgtt catttattat tttttcagag cattttcaaa aaatagttcc aaaaatttaa      1020
     gaaaatgtat acttccgctt gaatttcggg aattcccggg aaatttacaa atttcccggg      1080
     aaacgggaaa tatttttttt cgggaaatcc cgggaattcc cgggaatttt tttcccggga      1140
     cgggaaattg gacgctcta                                                   1159
//
ID   DNA8-13_LMi repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.11, Created)
DT   03-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-363
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2904-2904 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 363 BP; 106 A; 70 C; 73 G; 114 T; 0 other;
     ggtaatttgg tagaatccgt gtacatcgaa ggaaacggca tagccatcga tatatatcga        60
     atattcgata tagtgtttct gaaccggaga ttcgggcgct acgcgccctc acgtactaaa       120
     aaaaaatttc ttgtttaacc tatacctaac cttcttaagg ctacgctaca gatcaatttt       180
     tttaagtcaa agttaggtta ggtatagtta ggttaggtat aggttaaaca agattttttt       240
     ttttttagta cgtgagggcg cgtagcgccc gaatctccgg ttcagaaaca ctatatcgaa       300
     tattcgatat atatcgatgg caatgccgtt tcctccgatg tacacggatt ctaccaaatt       360
     acc                                                                     363
//
ID   DNA8-14_AP  repbase;    DNA;    INV; 937 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-14_AP.
XX
NM   DNA8-14_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-937
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1756-1756 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 937 BP; 273 A; 122 C; 159 G; 381 T; 2 other;
     cagggatcga aaccgtttca aattttaacg gttacggttt tagttcttga gaacggtttt        60
     ctaaattttc tggttttggt ttaggtttta agatcggttt ttaaaatttt ttggttttgg       120
     tttcggtttt aaaaaaggtt tttcaaatat tttatcggtt taaagaacgg ttttagaaaa       180
     ttttcggttt tggtttttgg aacggttttt aaaaatntcc attttatttt cctgtctaat       240
     tactgtagac tcgattttta ttatctatta actattataa gggccgagtc taaagccctg       300
     aaatatggct actttgtata attagtgtac aatatacgat ataacaaatt tacgttcagc       360
     agaactaatt tcgtgttatt aacttgaata tttcgtacct aatttaggtg cctcgtgcct       420
     acttttgcat tcgacataat attatgttgt catattatgg ttgagatcat tattcgatta       480
     cattaatatt taattgtata ttacaataac atcacactat attatttgta tttgcaattt       540
     tgaatcataa gtttagtaat aatatatata tattaatatt tcgtaatact cagtaattgc       600
     atcgggattt ttatcaataa atccgaacat aataatttct tcgtataaaa atagtagaat       660
     tacaaataat ataattaact ttatgaaatt caaagaaacc gacattagtt tcaaatttta       720
     atcggttttt caagaacggt acgagaacgg tttttcaatt ctatggtttc ggttcgggtt       780
     ttgaaaacgg ttttttaagg tcttaggttt cggttacggt tttttaaccg gtgtttnaaa       840
     gcttttggtt ccggttccgg ttccggtgtt cagaaatgag aaaaccgcgg ttttaaccgg       900
     ttttttggaa aaccggttaa accggtttcg atccctg                                937
//
ID   DNA8-14_CQ  repbase;    DNA;    INV; 1513 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-14_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1513
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 91-91 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95% identity.
CC   8-bp TSD. 376-bp TIRs.
XX
SQ   Sequence 1513 BP; 434 A; 324 C; 320 G; 435 T; 0 other;
     taggatgtaa caaaaccaca cttttttgcg ggcatttcag gggatgatcc cctaggtgta        60
     ctgagtcaga atcccaaata tgagcccgat tggttgcgac aggacctggc gctccggctt       120
     caaagtttaa atgggattta acccgtaaaa tcggtgcgtt ttggtttttg ccatttttga       180
     gtccttcaac gatttttgga tttttcaaaa acctcatgag cttatagttt gtgttccagg       240
     gtacaacttt gccgaagact gcgaagagat ttgaccgctc tgaaaaatgg tacagaattt       300
     acaaaatctt ttctcttgtt tttctgataa cgtaaaacat gttctggcaa cactcgcttt       360
     tgaggcgcgc tttcggcaaa ctatgcaacg catgctacgg tgcgtcgcga cgcgtcggca       420
     tgtatttgtc caagcgtcgt gttgttgttt ttgttgttgt gattgttgag aacgaaagtt       480
     cttatggaac tgcaagaagc tctccggttg actctcaggg ttcagttgga tgcccaggca       540
     gaaccgattc taaaccttgc tcgagtgcca actaacgcgg ctgtcttgaa agcgctttat       600
     tacgcacgga tgttgtgtgc attttgaata ttccgtattc cggaagatat ttcgagagac       660
     acgcatttta gtgagagttt ccactcgctt tgtaatcaat cgaagagtta tggcaatttg       720
     gcaataaaat cggtcataaa caaattaatg tattgcattg acaacataag taaatactat       780
     tttcatacag cagagttctc tggctagata ttttgcgaat tcattagaca ccaattgcac       840
     tatgttcgag cataggttcg ctaacatgtc ccccagcacc acaactggtc gcgacgaaaa       900
     agatccacac gggttaatga caggaccagg tgggcttaga actaaatcct gcgagtcact       960
     gccaaataga atacaggaat ctacgacaga ttaaaagagc agcaccggtg atcgaatcct      1020
     ccggcaccat cgaaaacata agcacaacat ccaaataaag cattttcttt ccatgtgtca      1080
     aactttgacc gttgtacgct ggatgttttc tcgctgctat agttacgacg cctggctctg      1140
     gatgcgcgcg ttcaaagaaa gtgttgccaa tactaatcaa acaaattaat ggcaaaaagt      1200
     ttttttattt tcaaatcatt gtacaagcag tactaattat caaatctctt cacagtcttc      1260
     ggcaaagttg tgccctgaaa ctcaaactat aagctcatga ggtttttgaa aaatccaaaa      1320
     atcgttgaag gactcaaaaa tggcaaaaac caaaacgcac cgattttacg ggttaaatcc      1380
     catttaaact ttaaagccgg agcgccaggt cctgtcgcaa ccaatcgggc tcatatttgg      1440
     gattctgact cagtacacct aggggatcat cccctgaaat gcccgcaaaa aagtgtggtt      1500
     ttgttacatc cta                                                         1513
//
ID   DNA8-14_LMi repbase;    DNA;    INV; 922 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.11, Created)
DT   03-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-922
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2905-2905 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 922 BP; 278 A; 201 C; 179 G; 264 T; 0 other;
     ggtaaaagtg cagtttatga gtccgcgagt tgtggttcat gcgtagacgt tggtaacggc        60
     gcgatgaatg acgcaggtga aggcggccaa tcagattccg cgtttcatgt gttgtgaatt       120
     tggcctttct tcacatgctt tttcgttcag atttaataat ttcttgcagt gtaaattcaa       180
     ttaagtgttt ctctctcaag taatacgact gacaattttt ccagtgaatt gcaatacgtg       240
     aataatgaac gttattaaaa ttagtgttca cttccctaag aaaaaaccag atgttggtta       300
     atttggaaga atccgtgtat ctcgaagttc cggttctgaa ccggagattc gggcgctacg       360
     cgccctcacg tactaaaaaa aaaatttctt gtttaaccta tacctaacca tctgaaggct       420
     acgctacaga tcactttttt aaatgaaagg atgtttccaa cacactttca gactactctt       480
     taacacacta ttgataactt caaaaacaac aggccagcgc agccttaagg ttaggtacat       540
     aggttacaca agaagttttg tctcgtagta gcgcctgaat atccggttca gaaccgctca       600
     gtataagtaa ttgcgctcgt aaaggctgcg aaagtcatgc aatcaccaca actaaaatca       660
     ctggtgaaaa taattttgac tacatagtac agccagtacg ctcaatctcc attacagaac       720
     gtaaatataa atcccacatt tattgcaatg caatatgttg atctaaagat ctttacatcc       780
     actacgccga tttgtttaca aaccataaag agaaagctat ttgttattgg ccgcgcgaac       840
     gcgactgctg attggctccg gcgccgttgc caacgtccaa acatgaaacg ccactcgcgg       900
     actcataaac tgcacttcag cc                                                922
//
ID   DNA8-15_AP  repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-15_AP.
XX
NM   DNA8-15_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-243
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1757-1757 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 243 BP; 81 A; 50 C; 41 G; 71 T; 0 other;
     accatgacaa attatatagg tatcatcaca gcattttgat acgcatcctc cgctctttac        60
     ttcgcctata tcgtagttct ccacttctta ttggctgtca atcatataca tacatatata       120
     acatagaaca aaatcaacca atgagaagtg gagaactacg atataggccg gaggtgaaga       180
     agatgcgtat ctactgcgca aaactagtac aactgtgatg atacctatat aatttgtcat       240
     ggt                                                                     243
//
ID   DNA8-15_CQ  repbase;    DNA;    INV; 2364 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-15_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2364
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 92-92 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >88% identity.
CC   8-bp TSD. ~40-bp TIRs.
XX
SQ   Sequence 2364 BP; 950 A; 223 C; 358 G; 833 T; 0 other;
     caggggcgcc gactagtcca aaatgttggg ggggcacggt tgttttccga aatcgatagg        60
     taagagtggc gattagatgt taaagtttct tgtatatcac gaattttaac aatttgaata       120
     ttacgatgtg atacgatttt ttttcatccg gaatccattt tttttagaaa aagataattt       180
     attaaaacgt gattgagaat gttaattggg gggaattttt tatatgtttg gaaggcgaat       240
     tccttctcat tggcatattc tcacttattt tctagaagta acagtcaata ataaaaataa       300
     tcagatattt agaaattcaa caatacaaat attctaaaaa taaaaacaaa agtaaaaagc       360
     aaaaatttag aacttcagaa atttaaaaat acaaatacac atttaaaaaa acatccattt       420
     ttcaaatctg caatttagaa aaaaaataac aaaattcaat attccaaaaa aaaaataata       480
     gtttaaaaaa attctagggt taaaaaaact catggcttga aaatgttaag aaatcaaaag       540
     ttgaaattca gaaatttaaa aaatcagaaa tttagaaata acaataaaat tcaatgttta       600
     aaaaaatcga aaatttaaaa attatgagac atcaaaattt tttaagaatt taagaattta       660
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa       720
     tttaagaatt taagaattta agaatttaag aatttaagaa tttaagaatt taagaattta       780
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa       840
     tttaagaatt taagaattta agaatttaag aatttaagaa tttaagaatt taagaattta       900
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa       960
     tttaagaatt taagaattta agaatttaag aatttaagaa tttaagaatt taagaattta      1020
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa      1080
     tttaagaatt taagaattta agaatttaag aatttaagaa tttaagaatt taagaattta      1140
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa      1200
     tttaagaatt taagaattta agaatttaag aatttaagaa tttaagaatt taagaattta      1260
     agaatttaag aatttaagaa tttaagaatt taagaattta agaatttaag aatttaagaa      1320
     tttaagaatt taagaattta agaatttaag aagtttaaga atttaagaat ttaagaattt      1380
     aagaatgctt atttcctgtt ttttttggca tattttttga gggtgcagtt aaaatttcta      1440
     cggccttttt ttttaaatcg aacataaatt gcagaaggcg atacactttt gttttttaag      1500
     attataatgt ggaattgtct cagattaggt tttaatttgt cggtttctca gtaaagcggt      1560
     gcgctagttt tcaaaaattt actttttttg aaacaattgt atttttcggc taaaattggt      1620
     atagaacggt tagcggttaa caaatgtatt tgaaatcttt tcaaatcctt tctaaaatta      1680
     cccaaaaaat tatcgaattt atcagcattt ttgtaaatgt aaagcagtca acaaatgacc      1740
     attttgaaaa gtgtttcagt ttatattcgc taaatcctga tctacaatgg caaatcgcag      1800
     aatgttgcgt ttgaaaactt gatgattgtt ttcgcaagag tttgcgtaag tttgattgta      1860
     gatgaagtgc tatggaaaaa gtacattggt tttgtttttg aaacaacatg cacagataga      1920
     aatcttatga gcaaatccgt aaaatctatg ttgacgacat ctctcaaatc atttaccgat      1980
     gcctctgtgc tcttgtacta agcttactga ttttcctaga gagcacagtg gtatagataa      2040
     aacgttgtcg atttagaaaa aaatgcatct aaatccagaa aattgtaaac gattttgttc      2100
     aaaaaatttc agcgatttcg aaaacaacaa atgtttttga actattttac ggattcgctt      2160
     acaagaattc tatccgtgtg tacaaacaat gttccattta agttttagat attattttca      2220
     attatttctg tgattttttt atatttgata taagaatatt tttcttccaa aatttctggg      2280
     gggggcacaa tgtatgggct gcccccccag ccaaatttta gggggggcaa aaagtaccgt      2340
     gcccccccag agtcggcgcc cctg                                             2364
//
ID   DNA8-16B_AP repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-16B_AP.
XX
NM   DNA8-16B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-167
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1963-1963 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 167 BP; 45 A; 36 C; 37 G; 49 T; 0 other;
     cattggcgca aataggtggg ggcttggggg gacttagtcc ccccacattt ctgccaagtc        60
     cccccagttc aaaagtcagt aattagtact gagcatatat aatttttaga aaatattata       120
     ggaggggctt tagtcccccc aaaataattt gtctatttgc gcctatg                     167
//
ID   DNA8-16B_LMi repbase;    DNA;    INV; 3943 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 19.11, Created)
DT   14-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-16B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3943
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2906-2906 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 3943 BP; 1131 A; 809 C; 854 G; 1144 T; 5 other;
     tagagatccg aaacgggctc cgaaatgttg cttaaaaccc gttagcgggc tttatgacgt        60
     caccggctcg gcccgctgcg ctcgtgggct tgccgacgtg gctcgcctgc cttcgccggg       120
     ccgggcgcta cccgcaacag gctcacgagc cgtgttgtcg gtgacacgga acccgcggag       180
     gccggcgggt cgggtcggcg ggcgcaacgg gtacagtggg ccgagccggc gggcccacgg       240
     gtacagcgag cttggcgaga cgggcccacg ggtacagcga gcctggcgag acgagccgag       300
     ctttgactgt tacagaasac tcgcagatac aagtcacgca tggtaattat ctatgtggct       360
     acctcttctt tattcataca gtgcttgtgt attagtggca tgctttattc caaacttgat       420
     gaaatgttca ctcgtcactt tcaaaacaac gggaaggtca ctcttacata agattcgtgt       480
     agtacatggc agagggtaat tcagttacag aattccttac aatctacgtt tttatcatct       540
     tgattaaatt tcgcacactt gctgatcaga actaggggaa ggtcactgtc tacataacat       600
     tcgtgtgata catttcttca tttacgaatt ttctaaaatc tgaagtttta ttacgatctt       660
     gaataaattt tccacacttg actttcaaaa caaggggaag gtcagtgtat acaaaagatt       720
     cgtgtggtac atggcggagg gttcttcact tatagaattc cacaaaatcc atagttttat       780
     tgcgatcttg atgaaatttc gcacasttgc tgatcaaaac taggggaagc cactgtctac       840
     ataagattcg tctggtacat ggcggagggt acttccctta cgaattctct aaaatctgaa       900
     gttttattgc gatcttgatt aaattttgca cacttggcat tcaaaacaag gggaaggtca       960
     atgtatacat aagctttaca aacatttgaa cgaaatctat agttttattg cgatcttgat      1020
     gaaatttcgc acacttgctg atcaaaacta ggggaaggtc actgtctaca taagattcgt      1080
     ctggtacatg gcggagggta cttcccttac gaattctcta aaatctaaag ttttatcagc      1140
     tatccgcgaa actcaagtta ttacatcaca aaacaaattt ttattttcat tccgacagat      1200
     tttatttaaa aaaaatgtat taatagggat ttattttttt ttttttattt cacattttcc      1260
     tttacaagaa tatattaaaa acgattgtac ccttattttc aaacgcgctg ctgcattgtt      1320
     tgaccgtgaa acaatagctt tatattctta ttattcattt cgattgattt tttgttcaag      1380
     aatgagttaa cagaatgtac agttgaaacg gcaattataa ggtgaacggg taatactttg      1440
     acagtacacg ctttagtatc cattgcgaag aggtgtgatg gagatgtttc gccctacgtg      1500
     cgcagtgcgc aaccgagcag cacagcggct gaccaggccg gacgcaaaac gaggcgggcg      1560
     gcacagcgca gtctaatggg gccgcgcaga ctgggagggg acgcgacgct gatgcgacct      1620
     gcacctgagc gccgggctgc gtgtcgctgc agctgaggca ccaggcaggc agaaagggga      1680
     ggcggggagc gggcgagcag cctgccgtac gctgtgtgtc gaaagtggca ctattattgg      1740
     ctgttcaaaa tggtccamtg tttgtaaacc tattggacca tactgctgtg gtcatcagtc      1800
     catagactta caaactactt aaaccaactt acactaagga caacacacac acctatgacc      1860
     aagggaggac tcgaacctcc ggcgggagcg gccgcccagt ccgtagatta ttggctgtac      1920
     gaacaatatt gccttatgac tgaaagtgtt tgtcatagac tagtgattcg tttttcaaca      1980
     cttaagtcct cgtccttttt tcatttgtga attatacttt tcaattactg gttacttata      2040
     tctgtacagt tttgtttagt gaaatatttt aacatcacat gatcaacaac caacgcagaa      2100
     aattttaatt tcaaagtaag atatcgtcga taatgtaata gataaatggg tgcaacattt      2160
     tacagtttgt taaataaaga aaaccaatca ttttgtttct aaggaactgg taaaattcta      2220
     ggtaattttg tcagaattgt gaaagttact gtaattaatg cttaagaatt tttgaatcct      2280
     tacgtaatgt ggtcagaatc tcaaagatac attttaaagc tcaaatcaac attccatagc      2340
     ttcgggagtt ggtacgttta tctttacttg gttttcattt ttggwatcag ttatttactg      2400
     gaaaatgggc ttatgattcg aagcctaggt cattctttat taatacatga aataaggctt      2460
     tcgtttagtt aaaacacaga caattgtgag ctttcatcgc ctaccgtatc tcaaaaatat      2520
     cgccagttcc ggttcatttg cgatagtctc ttgcaaatta cattcacgta agttcaaaat      2580
     gtttkttaag cttgtgggac ttaactgcgg ggtcatcagt ccctaaactt acaaactaat      2640
     tataaactac cttatagtaa agacagcaca aacatccatg cctgaggggg gattcgaacc      2700
     cccgacgggg aacggccttg cgcatcggag catagcgcct caacccgctc ggacactccg      2760
     ccgcggcacg taagtcaatg gcgtgctata taataccata ttatatttcc gaaaactgcc      2820
     ttttagtcat tccgatgtaa aatcagcatc atttattttc gtagtagttt gacatcgtcc      2880
     agatttttcg ttcactgtaa tacatttatt tcgtgatatg aatttttaat gcactaatga      2940
     acaaagcaac acttcgtcgc caaaatgagt atgaaatatg acgattgatc tgaccacgtg      3000
     attaccattg ccatggacgg aaatggagcg ccagtgtctc gaaaacgaat taacatatcg      3060
     ttctgctcag tttgaaatga aaagtaggaa tattgtctaa tttcaaacac aacaaccttt      3120
     gagcggacat cgactgtacc aaaaactcta tggagtatat tttttaccac agcacactct      3180
     ccattttcgt gtaatacttc acttaatttg atgctacacc gtaactatac acagtaacag      3240
     taacgaaaat aaattcacgc ctttattaca tcaaactata atatgtgtaa aattattttc      3300
     ttctgcgaat agtttgttta atatggagtg acaaatgttt cacttgatct gcaagagcat      3360
     cttagtgagg tgaaagaatt attaaatcta attgagtgaa atgagagtgc agcaacaatg      3420
     tgtggaaact atcttcacta caatgatatg aagttgttgt ctcgacacct tgcagaaaga      3480
     aacggatgaa tacttgatct gaagatcaag cgtacaaaat ttcaacagga tcgtatgaaa      3540
     actgttgatt ttgtcgaagt ccataagtaa agtagcctcc gccatgcacc acacggattt      3600
     ttatgtaggc agtgacgttc ctcttgtttt gaagatgtgt gcaacatctc atcaagatcg      3660
     gaataaaaca gtagatttgt atgaattaca aacgtataga cgcagtggcg tagacaaacg      3720
     tgtcgattct ccgagctcac ggacacagcg agtatggata tgacgtcaga gtacccgcgg      3780
     agctcatgtc tggtgactac gagcccgcga gtacgatggg acggctgcgc cagcgcactt      3840
     aggctcgctg tactcgcgca attacagcgg ggttgaaggg aggcgtttgt agtgtatgca      3900
     acccgcaaga ccgggctcat actcggcccg tttctgacct cta                        3943
//
ID   DNA8-16_AP  repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-16_AP.
XX
NM   DNA8-16_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-177
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1758-1758 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 177 BP; 54 A; 40 C; 36 G; 46 T; 1 other;
     cagtggcgca aatagggggg ggggcttggg gggcttagcc ccctcaaaat cactcaaagc        60
     cccctcaaaa nataatagta taccattctt aaaagtatgt acctataaat tataatttaa       120
     aaaaaaatgt gttggggctt gagccccccc taaacatttt tcctatttgc gccactg          177
//
ID   DNA8-16_LMi repbase;    DNA;    INV; 4742 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 19.11, Created)
DT   14-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4742
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2907-2907 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 4742 BP; 1371 A; 1001 C; 1002 G; 1368 T; 0 other;
     tagagatccg aaacgggctt cgaaatgttg cttaaaaccc gctagcgggc gttatgacgt        60
     caccggctcg gcccgctgcg ctcgtgggct tgccgacgcg gctcgccgcc ttcgccgggc       120
     ctggcggtac ccgcagcaga ctcacgagcc gcgttgtcgg ttacacggaa cccgcggggt       180
     cgggccggcg ggcgcaacgg gtacagcgag ccgcgcagcg ggtacagcga gcctggcgag       240
     acgagccgag acgagccgac gcctagcctg tgactcttaa cagaagacgc gcagaatttt       300
     cgcgacagat acaacttaca cgtgataatt acctatgatt ttgtattact tacgcctgct       360
     ttattccaaa cttgatgaaa tgatcactca tcactttcaa aacaagagaa aggtcactct       420
     tgcagggatt cgtgtagtgc atggcagagg gtgattcagt tacagaattt cttacaatct       480
     acgtttttat catgatcttg atgaaatttg cacacttgac attcaaaata aaggtcacgg       540
     cctacataag atttacgtgg tggatggcgg aggatacttc acgtatatag tttacaaaat       600
     ttatagtatt atttctaact tgatgaaatt tcggcacttg acgtcaagac tagcggaagg       660
     tcactggcta cgtaagattc gtgtggtaca tggcggaggg tacttcagtt aacaattcta       720
     taaaatctaa agttttatta cgatcttgat gaaatttcac acacttgaca ttcaaaacta       780
     gcggaaggtc actggctacg taagattcgt gtggtacatg gcagagggta cttcagttaa       840
     aattctataa aatctaaagt tttattacga tcttgatgaa atttcacaca cttgacattc       900
     aaaactagcg gaaggcactg ctacgtaaga ttcgtgtggt acatggcgga gggtacttaa       960
     gaattctagc ggaaggtcac tgtctacata agatgcgtct ggtacatggc ggaaggtact      1020
     tcacttacga attctactaa atcataacag gggtaccatc atgtataaga ttttgtttcg      1080
     ttaagggggg cgggggtagc ttactccaca cttagttccg tggcctgtgt ttttgttcga      1140
     cagagctcta tgtcttgtcc tggaagaggt agaatagaca agaatacaac cgttttctct      1200
     gcaatgtaca tacttcgtgt attttccatc tgcagcgttc actacagcgt caaacgtttc      1260
     ccaggcgcca ctctttctct tcttcagcat atttgcaagt acgtacactc catttaattt      1320
     tcttttcgca tcctctacgg tctcacaact aacagattca ttagaggcta cgtcatcgct      1380
     agagtcggtc attttcgctc tgccagtgat acgcaacaaa gcgagatcgg gcactcaact      1440
     gccgtgttac gtcgcgacta gtacttcctg ttcactttac aattgccgac ggcagcgcgc      1500
     tgaaccaaac tttgtttacg gccagagagg gccgaaggcg tccgacaaca ctcgacagta      1560
     cacgatcgac gcacgtggct ccgcattcta caaaaatgtt aaatgtttgt agagcttatg      1620
     ggacttaact acggggtcat cagtccctaa acttactact tatgaactag cttatactaa      1680
     agacggcaca aacatccatg cccgaggggg gattcgaacc cccgaccgca gcggccgtgc      1740
     agaccgtgac tggcacgctg cagacgctcg gccactgcgg ccggccgcat tgtacactca      1800
     gctattgcca cagtgcggct acgtaatctg agcgtttgct gaaatggata ggtatcgcgc      1860
     aaatatacgt cgtcacaaag tacatttata aggaaaactt aaataatttt cagttttcat      1920
     cgactactca aactaaggct cagcagggtg aatgacaaat ctacaccagc gtccatcctg      1980
     ccagcgggga catcttcctt ttagttatta gcctgtacct caatatttta atttcttaga      2040
     ttttagtatt aacagcaaat gtatttttat cagctacccg caaaaccaaa ttattacatt      2100
     gcaaaataat tttattttat agaaaatgta ttatgcattc gctccagtta ttccatagta      2160
     acattacagg tttttttctt tttccttcag aagaatatat taaaaacgac tgtaatgttt      2220
     tttctttgca aacatgctgc agcattgttt tatcgtaaaa caatacattt atattcttaa      2280
     tattcatttc gattgctttt ctgttcaaga atgagttaac agaatataca gttctattat      2340
     ctgttgcata tgtaccaatg agcgtaatta taacgcccgt acgccatacg aaataaatga      2400
     tagaacaagt caacagttcg cagcgccttc agctgaaatg gccattataa gttgaacggg      2460
     taatactgtg acagtacacg ctttagtatc cgtcgctaag gagtgtgatg gaaatgtttc      2520
     attctacgtc ccacgtgcgc aaccaagcag cacagtggct gactcggagg caaattgaga      2580
     cgggcggcac agcgcagtct aatggggccg cgcagactgg cagtagaggg gacgcgacgc      2640
     tgatgcgacc tgcacctgcg ctgggctgcg tgtcgctgca gccgaggcac agaaagggga      2700
     ggcggggagc gggcaagcac tctgccgtac gctctgtatc gaaagtggca ctattgttgg      2760
     ttgttcaaaa tgttacaatg tatgtaaaac tattggacca tactgctata gtaatcagtc      2820
     catagactta caaactactt aaaccaactt acactaagaa caacacacac acacacacac      2880
     acacacacac acacacacac acacacacac acgcctgcgg gaggactcga accctcggcg      2940
     ggagtgaccg cccagtccat agattattgg ctgtccgaac aatattgcct tacgactgaa      3000
     agtgtttgtc atagactagt gattcgtttt tcaacattta agttctcgtt ctcttttcat      3060
     ttgtgcatta tacttttcag ttactgcgta cttatatctg tacagttttg tttagtgaaa      3120
     tattgtaaca tcatatgatc aacaaccaac gcagaaaatt ttaatttcgt agtaggacat      3180
     cgtcgacagt gtagtaggta aatggatgca acattttatg gcttcttaaa taaataaaac      3240
     caatcatttt gttcctaagg aactagtaaa aatctagata attttgtcag aattgtgata      3300
     gttactgtaa ttaatgctaa agaatttttg aatccataca taatgtggtt agaatctcaa      3360
     agataaattt taaagctcaa gtcaacattc catatcttcg ggagttggta cgtttatctt      3420
     ttcttggttg tcattttttg tatcagttat ttactggaag atgagcttat gattcgaaac      3480
     ctaggtcatt ctttattaat aaatgaaata aggctttcgt ttggttaaaa cacacacaat      3540
     tgtgagattt caacgtctac cgtacctcaa agataccgcc aattccggtt catttgcaat      3600
     agtctcttgc aaattacatt catgtaagtc aatggcgtcc tatataattc catattatac      3660
     ttctgaaaac tgcctgttag tcagtccgat gtaaaatcag catcacttgt cttcgtagta      3720
     gtttgacatc ttccagattt tccattcact ctaatacatt tatttggtga tatttttaat      3780
     gcagtaatga ataaagcaaa acttcgtcgc taaaatgagt atgaaatttg acgattgata      3840
     tgaccacatg attcccgatg cgcagggatg gaaatgggag cgccagtgcc tcgaaaacga      3900
     attaacattt atcgttctgc tcggtttcaa atgaaaagtc agaatattgt ctacatttca      3960
     aacacagcaa cttttgatca aaaatcgact gtaccaaaaa ctctatgcaa tgtgttttta      4020
     ccaaagcaca ttcttaattt tcgtgtaata cttcacttaa ttcgatgcta cacagtaatg      4080
     aaaataaatt taggccttta ttacatcaaa ctataatata tgtaaaatct tctgcgaatt      4140
     gttttcttaa tatggagtga caaatgtttc acttgatctg caagaacatt gtagtgagct      4200
     gaaagaatta ttaaatttat tgaatgagtt gagagtatag catgaatgtg tggaaatgat      4260
     tttcagtaca atggtatgaa gttgtctcga cacattgcag aaagaaactg atgaatactt      4320
     gatctgaaga tcaagtgtgc aaaatttcaa cagaatcgta agaaaactgt tgattttgtc      4380
     gaattctatg agtaaagtag ccttcgccat gcaccacatg gaatattgtg taggcagtga      4440
     tattcctctt attttgaaga tcaagtatgc aacatttcat caagatcgga ataaaactgt      4500
     agatttgtat gaattacaaa catatggtca ccgagccacg gagacagcga gtatggatat      4560
     ggcgtcagag tacccgcgga gctcatgtcc ggtggctacg agcccgcgag tacgatgggg      4620
     cggctgcgcc agcgcactta ggctcgctgt actcgcgcaa ttacagcggg gttgaaggga      4680
     ggcgtttgta gtgtatgcaa cccgcaagac cgggctcata ctcggcccgt ttctgacctc      4740
     ta                                                                     4742
//
ID   DNA8-17_AP  repbase;    DNA;    INV; 919 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-17_AP.
XX
NM   DNA8-17_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-919
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1759-1759 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 919 BP; 340 A; 127 C; 98 G; 354 T; 0 other;
     cagtgttggg aaatatctag ataaatttat ctagataagt tatctagata aaaattattt        60
     atcttttatc ttatctagat aaatttctac tcagttatct ttatcttcat ctagataaaa       120
     ttctagttat ctatgagtac ttatctagat aatttattta aatgaactaa aaaaaaattt       180
     gaaaatttaa aatattttta ttattttatt tttacatttt tctatttttc atctattaca       240
     tagaaaacac gtttagtaat atgcattata ataccatgat tttaatattt attaatattc       300
     attgttagtc tggagtttta catcgtaaac aatgagaaaa cccaaaaata gaaatatgta       360
     atgggcatgt agtaggtaag attgtaagaa caactaataa tagcaaaagc aaaaacatct       420
     atccctgcta cccgccggcc accaccgaat gatgatggtc tcattagctg atacccgttt       480
     catagaattg tgtacaaagt atgaaaaata attattgttt taaaccgaca aaaataaacc       540
     aacattcatg gatattggac tcacaagcat aataatatta taataattgt aatttataac       600
     aatttaatat ttataaaacc ctattagaat tcccggtatt tcagttatcg cttaaccgat       660
     ctgtacgacc tctgtcctct gctttaaaaa attttaaatt atgtattttt ttttacctgt       720
     agactcaagt aggtatcctg aatattttca aaattaaaca tgaaattatc tcatatttat       780
     ctagataaaa atgtactaat ttttatcttt atctagataa aatttagtat aattatcttt       840
     atctgtatct agataaaaat tattacagtc atctttatct ttatctagat aaattattag       900
     ttatctattc ccaacactg                                                    919
//
ID   DNA8-17_LMi repbase;    DNA;    INV; 1381 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 19.11, Created)
DT   16-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1381
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2908-2908 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1381 BP; 441 A; 252 C; 326 G; 362 T; 0 other;
     cacggttggt agaaacacgg tagggatcac gaggtggatg cgcagtagcc agccgcgccg        60
     ctgacgtcac ggcgcaccct cgcagcgctc agcagcgtgc tgacttccat tgtgcgtgtg       120
     tatcggttgc gtttacgagt gagaacacgg tttttaggtc agtgtgaatt gtttttagtg       180
     actgtagatt gagagtattc tcgtaattat cactgtactg aggttatttt ttaacagtaa       240
     acctttaagt ggaaaagaat ggtttgctgt gcaatcgcca gttgtactaa ccacagtaga       300
     caagcgagga agttaggaat tatgtttgac gtgtttccta aagacagtga gatgaaaaga       360
     aggtggataa atacttgcaa acgtgcagat tcgtttacag ttgcatatgc tcgtgtctgt       420
     tcgatacatt tttcggattt cagaggtggc agaaattttt gagaattacg tcgaatacga       480
     aggggaaaat gttcaaaatt taaaggaaaa tgttgagctg ttagagatga ttgcaggata       540
     tgttgcttac agagttaaac aaaacaccct gaattagcac atttgtttgg taaaatgact       600
     gatcatgtaa atgtttcagg aaagaactgg cttcaaacaa tttcaagggg atccttaata       660
     aagccaactg aaagttttat ggaattcgtt ttgaaaatgg aaagagaatt tcaacaattc       720
     cacggcagtt acattgaccg taggccaaac gtttttggaa ggctaaagga tattataaat       780
     gtgaagtatc caggaatgga ggaccttgcc gtaatgtgtt tcgtaaggac acgcaccttc       840
     atcagaatga aatctctcaa caacaacaaa aattgcaaaa gtaataagcg aactgagagc       900
     gaacaaagac aaaaactgaa aaaaaatgaa aaaaagttgt gaggtaactt tcccgagtac       960
     aaaacggaaa cacattaata gagtttaata ttacattatc gtggttttct ccgtacctca      1020
     ggtctatgtg gtctaagcct gtgggagcct ctttccccag ggaaaaaaaa aaaagaaaaa      1080
     gaaaagcagc gccctccgat atggtgaaag aggttgacgt ccttcggagg ctttaaacta      1140
     gcatttcacc gaccataaaa agtagtctaa ctaatataga gcttaataat tgtaacaatg      1200
     atgataatac acgaaaacat agataatctc gaacacattg aaacctgtgc atgagttaag      1260
     cttgttgtgc gccgtgcgcc tatacggcta aacgcagcgc ggcgcggcga gagggtgcgc      1320
     tctgacgtca tcgctcacag cctgcctgcg cgtgacccct accgtgtttc taccaaccgt      1380
     g                                                                      1381
//
ID   DNA8-18B_AP repbase;    DNA;    INV; 433 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-18B_AP.
XX
NM   DNA8-18B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-433
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1964-1964 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 433 BP; 156 A; 56 C; 74 G; 147 T; 0 other;
     caagcccgga ttaagggggg tccaggaggg gcacggtccc ggggcccgtt gatttcgagg        60
     gcccattttt atccccaaaa tatttatttt gtaatgcgta caaaagtttt caaaaaaatt       120
     aaataattta aataattaaa taattttagt tataatagta attataaaat aaaaatgttc       180
     ttaattttat atcatgaaaa atttttaaat tataataaat ataaaaatgt ttataaaatg       240
     ggagttgtga actacatcaa ctacaaactt tattatccat gattgacgat tgtaagtggt       300
     aatttagtac taaattatac aattttatac agtcgtaaaa atttagagat acaatttttt       360
     gaagttatat ttgaaagggg gcccactaag tgtatggtat cccggggccc aattaatcct       420
     taatccgggc ttg                                                          433
//
ID   DNA8-18_AP  repbase;    DNA;    INV; 820 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-18_AP.
XX
NM   DNA8-18_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-820
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1760-1760 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 820 BP; 304 A; 108 C; 131 G; 276 T; 1 other;
     caagcccgga ttaagggggg ggaagggggc acggtcccgg ggcccattga ttttgggggc        60
     ccatctttat ccccaaaata tattttttta acgcgtccaa tacagttttc aaaaaaaaaa       120
     aattatttaa gtaggtaggt atagtaggta aattattatt aataattata aaataaaatt       180
     gttctcaatt ttatatcacg aaaaattact ataaataatg aactatgttt gccaacaatt       240
     ttgtttgtgt tttttttttt gagcatttta gattaccgat ttaactattt aagtatataa       300
     aaaggtagtt ataagaaaaa antatttagc tcttgtaaat taggtatttc agttaaaagt       360
     attaatgcat attatactaa actttagagg accatagtta ataacctagc gaaccaaaat       420
     tgatcatttg actgtcaaaa tgttcagaaa aaaagcttta ccagaatcca tcaaaaaata       480
     tagtggttac catttgaaaa aataaagtcg attttattat tggtacaact gcgtgtttaa       540
     aaattttgaa aatgttataa aaaaattgcc tgttaaaaat aaagaaacac gtcttttttt       600
     gttttaacga aattccatat catcgatcca taattgttaa aaaaaaaccc gcgtacaatg       660
     acataagata caccctgtat attttttgta tagtaaaaaa ttatacaata atataaagtc       720
     gttaatatgt aatgatacaa ttattttgaa gttaaagttg aaagggggcc cactaagtgt       780
     atggtgtccc ggggcccaat tgatccttaa tccgggcttg                             820
//
ID   DNA8-19_AP  repbase;    DNA;    INV; 373 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-19_AP.
XX
NM   DNA8-19_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-373
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1761-1761 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 373 BP; 119 A; 68 C; 63 G; 122 T; 1 other;
     caagcccgga ttaagggggg gtccagaggg ggccatggcc cccgggcctc gatagttcga        60
     atttattnag gggcctcaga cttgtccatt acttttttcg ttataggcta taacactgca       120
     taaatcacct taaaaaaatc gatgattatt tagcgaagaa aaaagcttat acattataat       180
     ttataaataa aatgatacat tatttattgc caagtaccta atatctatat atatttatta       240
     taacaggtac ctaacattaa ataatatata cattataaac ataacgtaac aagctattat       300
     tttttttttt tcgtacaggg gcctctttta aaactttggc ccctgggcct cgaaatgtct       360
     taatccgggc ttg                                                          373
//
ID   DNA8-1D_RPr repbase;    DNA;    INV; 2878 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1D_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2878
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3224-3224 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2878 BP; 1019 A; 432 C; 459 G; 968 T; 0 other;
     cagagatggg caaaaattta atcaattaaa ttccaattga attaaaacaa aatttaattt        60
     taatcatgat taaaaaaatt taatcggcca aaattagttg attgaattaa attcactttt       120
     aatttaattg gaatttaatc aattaaaatt tttaatcata aaaaaaagat taaaattaaa       180
     taatcagaat tttaattgat tgaattaaat tccaaattta gttttaatca ctttggacga       240
     ttaaattttt taatttaatc aaaatttaag tgattaaatt tttataacca caactttgcc       300
     aatggttgaa ccaggatcgg gccaatgcac cttcattctg tctagctggt gcctcatcac       360
     catcaatatt atcactgttc tcaaactcgg caccttcact ctactgcctc atccatcaat       420
     aaaactcggc accttcattc taccaatacg agtgccatca attgtagaaa gtgcttggag       480
     aattaggaaa aacttttgaa atatcttctc tctaactatt gttccctttc tattcccaaa       540
     gaccctctcc aaaaattgtg aggttgactc cctttgtcca catctcaata tattgttgag       600
     gagagtgctt gaggattatc gcaatccggt ctttggaata agttctgatg acgtctctat       660
     tgctggagca attgtttggt gggggcacca tgatcaatag gatttttgtc attgaaatct       720
     gtaaaacaaa tagccataat agatagttta ctggaggagt aacaagtaat acttttaact       780
     tgcaaagtgt taccagctca cggaaaacac tgataaatga ggaataaaac acatcctctc       840
     tatccgcatt gagtaaccaa gtcggttcaa aaagatgaaa aagaaggtta cattaaagta       900
     gtattcgcct actttataag tggcaagtca atccaaggtt ggttcaatgt aacataaagt       960
     gagaattact gtaatgtatg cataagacta aaacaattac tcacaaatta actgagtaat      1020
     gtagccttac gtgagatctt tctaatccag gaacgtccta caaaacgagg ttccaccaga      1080
     gtggaatagc aaaggtgaaa aagaagtagc tcaaattact tacttcacta acatggagat      1140
     gtgtagtaga tagattgaca aaataataga ctaatacata aataggttac atgtaatgcg      1200
     gtaaaaaata agttaatatg agtgtagtag gatggtccta tataagtcta gtgagtcgtc      1260
     aacatggtta aatgtgagtg taagatagtc ctatataagt ctagtgagtc gtcaacatgg      1320
     ttaaatgtga atgtagaaac tgcatttatg tttacagaaa ttgccactag agttctccac      1380
     cggatggagt ataaagtaag cttacagcct atgtaatggc ggcttacaag tctacaatat      1440
     gcccattcct cttttatcta tttcacgatt aaacaataca aattctcaag ttttttgttt      1500
     ctgttaacga taattgtgta aaacatgaag tattattcca aaagaaatat tatttatcgt      1560
     atttttaaag ggattttttt ttcttgctta attcgaaagt ttatcaaata cctatgggag      1620
     aaatgttgga aaaaaaattt taaattaatt atttcattga aattattagg tttaaagtat      1680
     tggccaatca caatgtagta tggttgcaga ctgtgggcgg gtcatgccca cctctagggt      1740
     aatcacgccc cgtccaatga aaacgagtca tggctggtca aagcgtatta acaatggtgc      1800
     ttcaatacct ttcacttatt tttctaaatc ttttattatt ttctcatatt ttattaactt      1860
     ttttgttatt ttagaaataa tattaatctt acgtagatat tgagaaaaaa tgctaacaaa      1920
     ttattcgaaa aaaaaacatt ctcaattttc aagaaatttt ttattaagtt aagatcgttt      1980
     tcgaatagtt ttcgccaata ttcgacagtt tcactttact ttctcatgaa aagaatctcg      2040
     tatgaacact cacatgactt tttcttacca taatttacga atataattga attttattgt      2100
     aacttagaat tgcataataa aaagaaaaaa gagatcaaat taataataat gttgatagga      2160
     tgcgacacat tccctctgaa ccaaactatt aattaagaaa aaattacaag ccaaactgac      2220
     atttaagctt aagtacgcca ttagatcagc ttcaaatgaa tccgtttggc aaattcatag      2280
     taaattacag aaaaagcctt tctttaaaat tgcacttccg gtgtattgat tttctttctt      2340
     cttggaagtt tggttagaaa tttaataatc aaatacttag aggtagtaaa accttaaaat      2400
     atctaaatgg aagtttagaa aaccttattt aacccctcgt aaaatgagag tataagatgg      2460
     tcctatgtag gtctagtgag tcaccaacac ggttaaatgt gagtgtaagg gtggacctat      2520
     cttggtttag tgaatcgtat gcttgtgaag tccaagtctg aaaaaattaa tcgaaaagtt      2580
     tttgttggag atactcagaa aggtggcctc gccaaaacgt ggtccgaacc attagttgaa      2640
     aagtcatata tagtgagtga ttaaatcaat ttgattaacg attaaaatta aattagttcg      2700
     gtgattaaaa ttaaagttca attaaattct cagatttaat cataatttta tttagtttga      2760
     ttaacgatta aatttgaaat ttagttcact aattattgat taaaagtacg attaatttcg      2820
     ctgattaaat caattaaatt tatgattaaa ttgtattttt aatcagtgcc catctctg        2878
//
ID   DNA8-1_AAe  repbase;    DNA;    INV; 770 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-770
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1281-1281 (2011).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 8-bp TSDs. TIRs are 297 bp long.
XX
SQ   Sequence 770 BP; 234 A; 159 C; 146 G; 231 T; 0 other;
     tagagtggtt caaaaaatcg tttttgctcc acaccgctca ttcgattcta gatcaaattc        60
     tgagtgtcct cccaaaattt gagctcattc ggatgaaaac tgagactgca caagcccttt       120
     aaagtttata tgggaattac tatgggaaaa gcaagcaatt cattcaatcg gtcatagtgt       180
     ttgcccatgt gctcttgagg attagtgcta cgttgatact gtgagataca ttcatcagct       240
     acaactttgc cgaagaccgt tttcaaatcg gacgtctcag taattagtta ttgatttata       300
     tccagtcaca aattcttcaa cagtgctcat ttcacttctg aacaggcaac attgctgcat       360
     ctggcgcgaa agatagcacg cacaaatcat ggctactatg ttttactgca tatatccagt       420
     gatgcctgca gaattgccca attattatag ccaaagtttt acaactcata caaaaatcaa       480
     taactaatta ctggggcgtc cgatttaaaa atggtcttcg gcaaagttgt agctgatgaa       540
     tgtatctcac agtatcaacg tagcactaat cctcaagagc acatgggcaa acactatgac       600
     cgattgaatg aattgcttgc ttttcccata gtaattccca tataaacttt aaagggcttg       660
     tgcagtctca gttttcatcc gaatgagctc aaattttggg gggacactca gaatttgatc       720
     tagaatcgaa tgagcggtgt ggagcaaaaa cgattttttg aaccactcta                  770
//
ID   DNA8-1_AP   repbase;    DNA;    INV; 847 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_AP.
XX
NM   DNA8-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-847
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1743-1743 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Includes an insert of a different transposon similar to
CC   DNA4-3_AP.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 847 BP; 270 A; 109 C; 142 G; 326 T; 0 other;
     cataggcgtg cgcacgggta gggctgattg ggctttagcc ctacctgaga tttttttata        60
     cgtgggtacc ttatgaagac atgattaaaa gtaggtatag cccttttagt ttttaaacgt       120
     ttgtgtttac ccgagagact atacagggcg atttatttaa aattgaacac tcattatttc       180
     aaaaagtgta attgtttttg aaaatatttt tttacacagg tacctagttt cgagtcgttt       240
     acaaaacaac tttgttaata aaaaaatttt attttttatt ttttttaaat ttttttttga       300
     caacagagtt ttaatttcat attccaaagt agaatatttt tctaagtatt tcgatacata       360
     aaaatcgaat ttagtgcgag tagtctatgc gttataagta tttaaagttt agatgagcgg       420
     agttgagtgg tacgggcttg ccccgcgaaa tgtatgtcca ctactccgct catctaaatt       480
     ttaatattta tatctcataa actaatagcc ctaaagtcga tttaccatga ataatttata       540
     ataataaata aatacctatt aatgttaatt gacaattttt atatattata tattatattt       600
     taaacgtttt tgaataaatt gttttattag attatatttg gttaaaattt aaatcaatat       660
     tgatgaattt tgtatgtgtg aaataatgaa aactgattgt ttacattttc cagtaaccaa       720
     caaaagggtc acttaaaagt ttgtagtgaa aatgtctata atttttttct tgtgtgacca       780
     tgactagggg gtgggtgatc agattgaatt tagccatacc tgactcagag gtctgcgcac       840
     gcctatg                                                                 847
//
ID   DNA8-1_BTa  repbase;    DNA;    INV; 1515 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1515
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 876-876 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1515 BP; 485 A; 266 C; 275 G; 489 T; 0 other;
     ggtacacgga ctttatgtcc acttttttta cgtccacaga cttttcgtcc acaattttta        60
     cgtccacagt tctaaagccc acactattgt taagtccatt acttaaacgt ccactaagtt       120
     aagtccacaa atgtaaagtc cactaaaatc aaattcaagc gtcatatttt agtccgtgtg       180
     taaaattata ttgacaatat cgaaatgaga aaattaagag agaatgaggt gttgttatcg       240
     taactcatat tttaaatgaa atgttaattt cttcttttga ttcatctttt caaattgtct       300
     ttggtaaata cttggtttca tttctatcct tgaaatttcc gatataaaat atgccttaaa       360
     tgtacattct tttttttaat gaaattgatt acttcatttt aaaaacattt acatttttaa       420
     aacgtggtaa atatttgtaa aaccttttcc aagcaatggc atcgatatga atctcaatga       480
     gccgtagttg tgatgaaaga aactatacaa aaattaataa aagaggaaaa aaactaagaa       540
     gcacgcaatt ttttgttttt aacttatttg tacatcgacc tccttgagtc aaatacgtcc       600
     aattttgagc gtttggttgc gcttacacca cgctgcagca cagtaaaagc ccaaaacata       660
     aaagaataaa tttgaatgct ttggaaatca ttaaatttga cacggaacca ctattatatt       720
     tacaaaaaac acattatatt ttccagtagt acatatttct ttttcatcag tttaaaaggg       780
     aataatcaat gcagagagtg caaacatttc aaaatcatga gttgaaaaac gctgactccg       840
     cgagtttaaa tattagagcc taacacagag cggagcggcg tgttagcagc gcagaacgcg       900
     cactggcgcc tacaaaccta acgggatact tcacgcattg cgcaacgcgt gaagtatccc       960
     gttaggtttg taggcgccta tgcgcgtgtc acgctggttg cctgccgcgc cgcaacgctt      1020
     taagcaacta tttcgcgtca gaggcgttgc acagtatcct acaagattga aggcgcacga      1080
     aataactagt taaagaggac tttcaatttt gactgcatct gttactgaaa aatgtttaat      1140
     ttggcattgg agcgtttcct aggctcccgc tttggttttc atcttatcat atccgtacag      1200
     tgtacacatg aacatatgtt tttatctgct cttagagtct gttctctttc atgacttgat      1260
     tcatgaatga aatgttttta agaatgaagg tagtagtagt atgcatttat ttttgaggtg      1320
     gttcctgtca tttaaatgag aagaaaaaaa tgtggacata acatgtccac aatttggaca      1380
     attttggaca tattcatggt tggacattaa atcatgtgga cttaataaag actggactta      1440
     acgtttagtg gacataaata gcggtggaca tttatttaat ggacgaaagg taggtggaca      1500
     taaagtcctg gaagc                                                       1515
//
ID   DNA8-1_CQ   repbase;    DNA;    INV; 2157 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2157
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 78-78 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. 8bp TSDs. 863bp TIRs.
XX
SQ   Sequence 2157 BP; 670 A; 404 C; 394 G; 688 T; 1 other;
     tagcctgtcc cattttgagg tcatgtcgag gaatttcagg tgctcacttc ttaaatgata        60
     gattatgatg ttaggaacaa tgttttctta gacaagaaaa aataataaaa tactttctcg       120
     caccccctag tcgatttact gaaaaaagtc acttttttga acaaattttc taaaatcgct       180
     tggaatcaat acaaaaactg tttcgatcag gtgtgtatta tcttcaaacg ataggttttt       240
     gtccatagat taagatgcac tatcaatatt ggaccaaaat ttaagttttt ggactctccc       300
     aggcggattt gtgtcgaaaa aatcgcattt tttcgaaact tttttcagaa atgttcattt       360
     aatttagggt agcctatttt tcccagtgaa accaatacat gcagcttgta ggaaatttca       420
     tggcgaacat ttttccctct gagaaaatgc aatttcgaca ctccagagcc gagatatttg       480
     agttttagtg aggaaaaaag tgccaatttt caaaatttct cagaattcag aagcaaggcc       540
     tactaattac acgatgtagc aagcatatgt ctcaaaggtc agggtatgct tttttatagt       600
     aattttggcg gctgaatccg aatctgaaat caaatttcgt gtaaacagtg atgttttgga       660
     gctacaccct tttggaatgt tatttgcgtg tttaagaggc agtttttgta aatattgctc       720
     ggtttgttct agaggtcgta tcgaggtgct ccgatttgga tgaaactttc agcgtttgtt       780
     tgtctataca tgagatgaac tcatgccaaa tatgagccct ctacgacaaa gggaagtggg       840
     gtaaaacggg cattgaagtt tgaggtccaa ggcaaacata acaaaatggc ttaaaattgc       900
     tgccgsatgc tttagtaaca acttcgtcaa ttccaactct cttagatgca ttcgaaaagc       960
     attagaagca ctgcgggtca aaatgagcca taggacgtcc aggattggtt taacttttgt      1020
     ctggcatagc ttttgcaaat tactgttaaa aatggttttg gtttttaaac ctcaatatct      1080
     ttttgcaaca gccagcaaca ccccctagtc aaaagttagg gaatttcatg gactataagc      1140
     ctggacggta ataacttttt ggccaatcgc agtttttctc atagtttttc gatttttcta      1200
     taacaaacgt tttacaacgt tagttattgt cctgaggcgt ccatagcggc actttttagt      1260
     ctcccttttg tcatattcga aatcctcgga aaattcaaac ttcaatgccc gttttacccc      1320
     acttcccttt gtcgtagagg gctcatattt ggcatgagtt catctcatgt atagacaaac      1380
     aaacgctgaa agtttcatcc aaatcggagc acctcgatac gacctctaga acaaaccgag      1440
     caatatttac aaaaactgcc tcttaaacac gcaaataaca ttccaaaagg gtgtagctcc      1500
     aaaacatcac tgtttacacg aaatttgatt tcagattcgg attcagccgc caaaattact      1560
     ataaaaaagc ataccctgac ctttgagaca tatgcttgct acatcgtgta attagtaggc      1620
     cttgcttctg aattctgaga aattttgaaa attggcactt ttttcctcac taaaactcaa      1680
     atatctcggc tctggagtgt cgaaattgca ttttctcaga gggaaaaatg ttcgccatga      1740
     aatttcctac aagctgcatg tattggtttc actgggaaaa ataggctacc ctaaattaaa      1800
     tgaacatttc tgaaaaaagt ttcgaaaaaa tgcgattttt tcgacacaaa tccgcctggg      1860
     agagtccaaa aacttaaatt ttggtccaat attgatagtg catcttaatc tatggacaaa      1920
     aacctatcgt ttgaagataa tacacacctg atcgaaacag tttttgtatt gattccaagc      1980
     gattttagaa aatttgttca aaaaagtgac ttttttcagt aaatcgacta gggggtgcga      2040
     gaaagtattt tattattttt tcttgtctaa gaaaacattg ttcctaacat cataatctat      2100
     catttaagaa gtgagcacct gaaattcctc gacatgacct caaaatggga caggcta         2157
//
ID   DNA8-1_DEl  repbase;    DNA;    INV; 1509 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   30-JUN-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-1_DEl.
XX
NM   DNA8-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1509
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 413-413 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 8-bp TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1509 BP; 523 A; 225 C; 238 G; 523 T; 0 other;
     cagtgttggg gtgtatctag gtacttgtac ctaggtatgt acctaggtaa tttttttcgg        60
     tatcttttac cttacctagg taaaaaaata tttggctacc ttttacctta cctaggtacg       120
     aattttcgtt taccttaagt tttagctatg taaggtattt aggtacttcc atacgtgtat       180
     gtaaatattg tgcatattag aaatagccct gcttcacagc aatgcaatcg aaaacttaga       240
     aatatgatag ttccaccact tactcacaga ggtctttatg gtaagaatgc aaaaatattt       300
     ttcgttggaa tttggtataa tactaaatta gcaatgccgt tgctacctaa acagtgcact       360
     tttgtcgatg acattggttc ctagaaaacg tcacaacaaa tcttaaaatg agcaaagaag       420
     acgcagaaaa aaaggagcta ccattaattt taaatgctac tttcttttta ccggacggga       480
     agtgcaaact gtgtgtgaac aaaactatca aatttgatga aaagtcaacc ggcaacttgc       540
     ataaacatct gaaggtaagt gaactgtgaa gtgaattgat aaattaattt tcgcgcgaaa       600
     aaatgcatgt gcgtagacat gcacatgtgc ttttaaacat atgtatatac atatgtgctt       660
     attcatacat ttatgtggtg cagtcatcaa tgtgaatatg accatatgta tgtatttatg       720
     tatagattgt gcctatttca ttaaaacatt taaacaatca tagcatgaag cagcacgatt       780
     cccgcaattt tttttaatgc accttcgaat tatttgagta tgtgaacaag cacatattta       840
     tgtatgcatc atatatgtat gaatatgtgc ttattggagt gtatgtttaa atgtaaatgt       900
     gcatatctat gcacatgcat tttttcgcgc gaaaattatt ttccataagt ttaaataatc       960
     taaaagtgca ttttaataag aaattgacgg atacataaat acatacatat ggtcataatt      1020
     ttatggacat tgatggggtg gtcattcttt attttatttt tattttccac caaaaaatgt      1080
     aaaactattt ttttattaaa ccacattttt ataaatatat gtatgactaa gcacataata      1140
     atgtttaaat taaagaagta taatgaagac attaaaacat tatgaaactt tttttttcag      1200
     agggttcacc cgaacagtta ttcttcgtat gaagctttga aagcgaaaaa ttcaaaaata      1260
     gaagtgaaaa tttccggtga tctcaaaaaa agaaaccaat gtgacttatg tttatatctt      1320
     tgtatctcag aaaaagaaac tgataataaa aatttcaaat ttaaaaaatt tttaagttgt      1380
     attttttacc ttttaccttt acctaggtac agaagaaatt gcataccttt taccttacct      1440
     aggtacaaat atttgcaact accttttacc ttacctaggt aaaaaaaaat ggtacctgtc      1500
     tcaacactg                                                              1509
//
ID   DNA8-1_HSal repbase;    DNA;    INV; 477 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-477
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 834-834 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~84% identical to consensus.
XX
SQ   Sequence 477 BP; 113 A; 122 C; 121 G; 121 T; 0 other;
     agtgctgggg gataagtgcc cagttcggcc agatttcgga gacgacgcct actttccccc        60
     tactaccgct cccggcttga cggccgagcc gccgatcgcg cgcgacagct ttgttttcag       120
     gagcgttcgc atatgaaaaa tacgctggga tcgtactttc cgccaaaccg tcattagaat       180
     tttgacaata gatttccaca tcactcgtga ggtactattg ttgatgcgtt ttttttaagt       240
     ggtttcccca gtaggcttat tccactaaaa attgataaag atgaaacata tggctctatt       300
     ctaatgacgg tttggcggaa agtacgatcc cagcgtattt ttcatatgcg aacgctcctg       360
     aaaacaaagc tgtcgcacgc gatcggcggc tcggccgtca agccgggagc agtagtaggg       420
     ggaaagtagg cgtcgtctcc gaaatctggc cgaactgggc acttatcccc cagcact          477
//
ID   DNA8-1_LMi  repbase;    DNA;    INV; 931 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-931
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2973-2973 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 931 BP; 320 A; 188 C; 142 G; 281 T; 0 other;
     cagggttgcc aacgaggtca tgataaaaac caccgaagtg accgtaaaat cccaccaaaa        60
     accaccgaac tttccgaagt tcccatgcaa aaaaaccact gtctattcgt ttgttcttga       120
     ccgattgatt tgaaatttgg acgcaactat gcattttaaa ggaggagttt ttatgtacct       180
     gacttatctg tatacacact agacggaaat acaaaaaaat attgtttatt caaaagcact       240
     tcagtaaaca tgttatatat aaaaacaaac aataattact ttgagccatt gcaatgcttg       300
     tcgggtacag acagcaaatt gtgaaatatt tgaacttgaa aacagaaagt aatccagtct       360
     ggaaaggagg tcagcgtcag tcattctatt gtctttattt tatgtcagaa gatctagatt       420
     tcagctatat tccaatgtaa tcacatctga gaaaaaagaa agttaacaat gaaagtacag       480
     tcacatatta agtgtctgca atgttcagtc attttcacaa caagaaaaat ctgataaagt       540
     gctgtagcaa caaatacata ccattaacac aatgtcagtt cttcgtcctc ggtgtgatgc       600
     aagtacaaca cttcctctcc atggagattg gagaagtcaa cacagaacta acagcctaca       660
     acaatgagca atgagtcata ccattgttaa tatctttgaa ctcttaagaa ttttacattt       720
     tatccaataa tgtgatacat ttcctagtca tttatctgtc catattcgtt aataatttca       780
     aattaggatt atattacttc tgcaactttt tttatttatt ttcattaaaa tccaccaact       840
     ttcccacctc ccactgactc agattttttc ccaccgtcgg ctttaaaaaa ccaccagatt       900
     cggtgggaaa ccactgacgt tggcaaccct g                                      931
//
ID   DNA8-1_RPr  repbase;    DNA;    INV; 2306 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2306
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3225-3225 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long. It contains
CC   MSAT-1_RPr sequence, which is masked out here.
XX
SQ   Sequence 2306 BP; 820 A; 394 C; 352 G; 740 T; 0 other;
     cagagttggg caaaaattta atcaattaaa aaacaattga attaaaccga aatttaattt        60
     taatcatgat taaaattaaa aaatttaatc ggccaaaatt agttgattaa aattaaattc       120
     acttttaatt taatcggaat ttaatcaatt aaaattttta atcataacta aaaattaaga       180
     ttaaaattaa aattaaataa tcataatttt aattgattga attaaattcc aaatttagtt       240
     ttaatcactt tggacgatta aattttttaa tttaatcaaa atttgagaga ttaaattttt       300
     aaaaccaaac attgccaatg gttaaaccag aatcggacca atgcatcttt attccgccta       360
     gctggtgcct cttctctatc aatattatca cctttcccaa acttggcacc ttcattctac       420
     cagtctggtg tctcatctat accatgttgg tgactctcaa gacttacata ggaccacctt       480
     acactcacat ttaaccatgt ttaccactca ctagacttag ataggaccac cttactctca       540
     catttaacca tgtttaccac tcactagact tagataggac caccttacac tcacatttaa       600
     ccatgtttac cactcactat acttagatag gaccacctta ctctcacatt taaccaagtt       660
     taccactcac tatacttaga taggactacc ttacactcac atttaaccta gttggcgact       720
     caatagactt atgaacaggg tgaccagagt tatgtgttcc acccactttt tttttaaacg       780
     gcgggaaatt tcaaaaaaat agaaaacacg tatttaatca aatctagttt ttttcagtaa       840
     ttgacccatt ttttaaaccc caatttcccc agatacagta tctaagtttt ttttcaaatg       900
     gaacaaacca gatctaggca ggctagagct attcgatatt ccagatcttc gattgaagcc       960
     aagggattaa ggttactgta cactttattt tttagatatc ccctctgaaa atagtctatt      1020
     ggggttaaat ccgtagttcg aggtcaaaat cgagctcttc ttgaaccgga tgataactgg      1080
     ggatgaaaag tagattacct acgaaaacat cgtaaggaaa aggacatatt gtgaacccgg      1140
     aaaacctagc ccttccacct gtaaacctaa tttcactctg aataagagaa tgttgtgtat      1200
     atagtgggac attcgaggac ctacacatta tgagctttta aaaccgaacg aaaagctaaa      1260
     ttcggagaag tattgttagc aaatgcataa tttaaagaca gcagtccaag aaaaaaggcc      1320
     ggcgatgttc aataggaaga acatcatact gcatcatgat aatgccaggc caaatgctgc      1380
     tttaaagact cgtctaaaaa ttgcagaaca aggctggaaa attctgtcgc atccaccata      1440
     ttccccgaac ttagcaccct ccgactatca cttgtttttg tccttacaaa atttgttgaa      1500
     gggcgaaaca tttaaaaatg aagtagatat caaacaagta ctggttcaat ttctcgcatc      1560
     aaaaaataat acatttttca aaaatgaaat acataaattg cgctcacgct ggcgagatat      1620
     cattaataat aatggcaatt atattattta ataaagttta tttataaagt ttattggtaa      1680
     gaaaaatttg tattttgttt tattccaaaa acggacagaa ctttccggta gaccgtatat      1740
     aagtctagtg agtggtaaac atggttaaat gtgcttgtaa ggtagcccta tataagtcta      1800
     gtgagtcgcc aacatggtta aatgttagtg caaggtggtc ctatctaagt ctagtgagtg      1860
     gtaaacatgg ttaaatgtga gtgtaaggtg gtcctatata cgtctagagg tctagagact      1920
     cgtgaagaag tccaagtcta caaaaattaa ccgaaaagta tttattgaag acgcttagaa      1980
     aaagggcctc gccaaaacgt ggttcgaacc attggttgaa aagccataaa agtggatgat      2040
     taaattagtt tgattaacga ttgaaattga actaattcgg tgattaaaat taaagttcaa      2100
     tttaattctc agatttaatc ataatttttt tagtttgatt aaattagttt gattaacgat      2160
     taaatctgaa atttaattga ttaaataatt gtcatatgat taaaattacg attaaattcg      2220
     ccgattaaat tctgattaaa attaaaaata aatttaatca attaaattta gaatttaatt      2280
     ttttttttaa tcagtgccca actctg                                           2306
//
ID   DNA8-1_TCa  repbase;    DNA;    INV; 1767 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   21-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1767
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 668-668 (2009).
XX
DR   [1] (Consensus)
XX
CC   8bp TSD. Unclassified.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1767 BP; 577 A; 286 C; 306 G; 598 T; 0 other;
     accaaagcca gtagatatac taaagtagcg acacggacct tgacagggca acaataacga        60
     ttatacactc tagagagggc gcaactatcg aaattcgaca tataccgcat tatttacata       120
     aaatgcctag ccttgaaaag ccttagtaag tgcgttttgt ccctgtttct acgtttaatc       180
     ttcactaaat gaaattgcta aaggggatgc tcaaaagaga tattcgttaa aggtcacatt       240
     agatgataga tttaaatcga gaatgtattt aaacaggcag tttagttttc caaggctcga       300
     cattttttgt aataacgctg taattttaaa ggttcgtcaa attgtcagta attttgaaca       360
     tacgtcaaaa ctgtcaagat tctctcactt ttgaaaaatt ggtaaagagc acagtgattc       420
     tggtgttcat ctgtagtttt actgtggtta ttgattatga acagattcca tggaactttc       480
     aaacctgtgc ttcaatcacg taaataataa atcgacacca aaaacattaa acaaaagggc       540
     ctccagactg ttcaaagtcg tccacattac gaagcacgtc tgtgtgagaa tactggaaac       600
     tcattcaaac aaaaattgtt taagaaacgt aaagtggtag gtatcaactt gaaagagaaa       660
     tttctaagat accaaatttt cattaagtat ttcaggtaga tttaaacaat acttccttga       720
     aaattcattc taaattatta gattccgccc taatgggaaa gaatttaaga ccgctctgct       780
     tacactgacc ttcgtttcac aaaatttaat gcatctaaat ctgggaattg tagcgcatcg       840
     aagtttggtg gactttttat agccacttat ttacagcaac tatgttatac aaaatttaaa       900
     taataaagag aaattcaggt tgtattattt ctatttctta ggtaatatcg aggtgtaaac       960
     cgtaccccaa attttgtaca ccagatggtt tcctgtgatt taatcatgat tccttctgat      1020
     tttccctaaa tttttaaagt gatttcctta aaatttcttg atttactcaa ttttgtacac      1080
     tgatttcctc tgcggtttac ctctcgggta atattgaaaa catttacttt tcttattgcg      1140
     aaagatgtct tggtttcata gcagttgtta atagtgttga gggaaaaaat taaatttaat      1200
     taaaaaaaaa taaatcgacc aatttaaaat cctggagtaa ttaaatacga taacctgtaa      1260
     aaacacttag ggaggagttt attaaaatta gaaatgtagg taacacaatt ttttggattt      1320
     aaacaactat tattttaaaa cgtgttgttg gctttttcgt taaatacaaa gttcaaattc      1380
     ttttaaggaa tgaattcact gttgaagcgc cagcaccttc ttcgaaatgt ccataagagg      1440
     tgctgtattc tgcgcattct aaaagccttt ctcattgcaa tgttcagttg aatttaggga      1500
     cgatctgatt tatttttacg tgagtgaagc acaagtttga aggtttcatg gtatctgtac      1560
     acataaacag taataaccag ggtgaaatta tagacaatca ccgaatttat tgttctgatt      1620
     caccaatttt tcaaacgtga gaaaatcttg acatttttga cgtacgtttt tgaattttga      1680
     tggtggagcc atctgtagag tgtataatcg ttattgttgc cctgtcaagg tccgtgtcgc      1740
     tactttagta tatctactgg ctttggt                                          1767
//
ID   DNA8-20_AP  repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-20_AP.
XX
NM   DNA8-20_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-454
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1762-1762 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 454 BP; 156 A; 79 C; 71 G; 147 T; 1 other;
     cagggactgg aaccgaacct aaaagaaccg gttctggaac cggaaccttt aaaatattaa        60
     gaaccggaac cgaaaccttt attttaatat aataaagtac cggaaccgaa ccggaatttt       120
     taaattaaat aggtnctttt aggttcaaaa ataaaataat tttatttatc ataatttaaa       180
     ggtattactg ttttgtgtat aaactatgta tgatcatatt atgagttttc taatatttct       240
     catactatta attaaacccg cattccggat aggtatttaa aattattata cttttcggta       300
     cctaaattat ctggaaccgg taccgaaatt attcggaacc ggtaccttta ttttttttca       360
     tcaaagaacc agaaccgaac cggaaccgtt attttatttt tggagaaccg gtaccggaac       420
     cgataccgat aaattcaaaa ggttccagtc cctg                                   454
//
ID   DNA8-21_AP  repbase;    DNA;    INV; 799 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-21_AP.
XX
NM   DNA8-21_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-799
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1763-1763 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 799 BP; 350 A; 68 C; 83 G; 298 T; 0 other;
     tagtgtttga aaatttcatg aaatttaaaa aaatgcgtga aatatttcaa ttatcattat        60
     ttttgtagtt ttgtcttgta aaatattaaa taattaatct aaataaatta aatacctcat       120
     tagtcattga cacacatttt tttcttagtt ttaacgtata ataatataat attgtatttt       180
     tttgctgtac ctattatttg atgtaaaaat gtaaaataaa taaggaatag ataggtatat       240
     tgtatatgta ccatgtatgg tatattgtat atgtaccatg tacgtggtaa cttatatagt       300
     tatatgttaa aaatcagatc agagttttct tgatcgagaa tccttatgac atgtatttgt       360
     ataattgtat ataaaaaaaa cataataaaa ataaaaatat aaaaatggaa tataaattta       420
     aaaaaaaacg cttgggtata acgtttatca tataacgtgt tatcgtataa tgtaataatt       480
     atgttatgtt atgaagatca ttgtttctta ttaatgttaa catgtattat aattatataa       540
     aacaaaaaac ataataaata ttaaaaagaa acagtaaaag gaaaccagta cttaggtata       600
     tattataaag atcatagttt tcttgctaac gattcacatg aaataatata aattataatt       660
     ataatttata tataataaaa atataaaaca aaataatatt taaaaaataa aaatgaaata       720
     attaataaaa atccaatatt tcacaaaaca ttgaaatatt tcacaactta gtgaaatatt       780
     tctcatactt caaacacta                                                    799
//
ID   DNA8-22_AP  repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-22_AP.
XX
NM   DNA8-22_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-213
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1764-1764 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 213 BP; 66 A; 38 C; 38 G; 71 T; 0 other;
     catggcttaa atatacaagg ttattgcaat agtaccccca ctatatcatt ttatcacgtt        60
     aaggaattaa aatggcagcg taaggggacg acgtatactg gctatactat gatattatat       120
     gctatgatat ggaccgtacc cttacgctgc cattttattt ttgtttgata acaatacggg       180
     ctatgtgcaa taaccttgta tatttaaacc atg                                    213
//
ID   DNA8-23_AP  repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-23_AP.
XX
NM   DNA8-23_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-207
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1765-1765 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 207 BP; 74 A; 43 C; 32 G; 58 T; 0 other;
     catagataat aaaagaatgg ataggccata ctatcttatc acacgtgcat gaacgttaca        60
     aggggtctca taataaaata atgataagac cccttgctag agtgagaaac accatataaa       120
     aactggctgt ctctcatcta cattccagca cgcaaacccc tcgtatatta atataggaat       180
     ggcctatcca ttattttatt atctatg                                           207
//
ID   DNA8-24_AP  repbase;    DNA;    INV; 738 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-24_AP.
XX
NM   DNA8-24_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-738
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1766-1766 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 738 BP; 285 A; 108 C; 108 G; 235 T; 2 other;
     cagtgatggg aaagttcttt ctaaaaatga attagttcaa gttcaagttc aagacattaa        60
     aaatgaacta gttcaagttc nagttcatag tttttagaat gaactagttc aagttctagt       120
     tcagtagttt atagttttta aaatgatcta aaattataaa agttactaaa gaaaataaaa       180
     taaaaaaata cttaagttag aaataaaaaa aaaaatacgt ggaaatacgt gcgactgccg       240
     actatgcgtc gaaaccggcg atttttatta gtatacggca aacaataatt tgtatgagta       300
     tgttanaata atttgtatga acatgttagt cttgggaatg ttatttataa cactttattg       360
     tattatgtca agttacaaca gaattataat aatataccat aaatggtata ccaactattc       420
     ttatcggcga tcaacggcgc ggcgttgtga tttcagggca aaaataaata tccaaactaa       480
     aaataaacaa aattaaaaac aaattatatc ttttgattct tgagaaggaa cctgatcggc       540
     tacaaaacat ttcaaaacgt tatcctatcg cctgttctat gaaaattaaa ttgtcaatga       600
     acgaaaccaa aacgttcaaa atcataatta ataagaactt agttcacgtt caagttcatt       660
     tcttgaaaat cgaactcgtt catatcaagt tcacacaatt tgaacgcgtt cttatgaact       720
     cgttctttcc catcactg                                                     738
//
ID   DNA8-25_AP  repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-25_AP.
XX
NM   DNA8-25_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-674
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1767-1767 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 674 BP; 220 A; 102 C; 102 G; 250 T; 0 other;
     gccggttgtc gtttgcgcat cactattgtt atttttgacc ttttttgtaa gacagttgcg        60
     catcgttcga tttttgggtt atacatcgtt tgcgcatcga tcgtttaaaa ggtcgtacat       120
     catttgcgca tcaatattat ttaacaatag aactgaaaaa aaggtgtata cccaaaagcg       180
     tttagctttt ctcaaactat atgtatattt gtattataat tataactatg actgtaatat       240
     tcctaattga actgaacaaa atttagttga attaattttt actcaaacta cctatatgtt       300
     atattatata tattttttac tataacaatg cccatgcaat gtacctaatt aaactgaata       360
     ttaaattttt aactacaaaa taatttgcaa attgttgagc tttttataaa tttggtcaac       420
     atttgaactt taaatgctta ttgaacaaaa acttgtgcct atgaatatta aattattcat       480
     tatctatata atattatatg tgtgtacaat tatttttata cccttctatt gtttagaatt       540
     ttgatgcgca tatgatgtac gataatttgg tgcaggtaaa cagacgatgc gcaaacgata       600
     atctgccgcc gatgcgcaaa cgatgtacga tattttggca caggtaaaca gacgatgcgc       660
     aaacgatata cggc                                                         674
//
ID   DNA8-26_AP  repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-26_AP.
XX
NM   DNA8-26_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-261
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1768-1768 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 261 BP; 88 A; 44 C; 49 G; 78 T; 2 other;
     accatagata tatacaacaa actagatagc cgtctcctcg ttgtcatgga agtcggccgc        60
     catntgcaaa gcaggcnacg tctacaaaat aacgttatca catagactag tatatatgta       120
     tagataaata tatatgtata taaataaaat gtaaaataaa tgtaaacgtt gcctgcttta       180
     tagatggcgg ccgatttcaa catattggtc gcgactgtag tattcgaaga cggctatcta       240
     gttgttgtat atatctatgg t                                                 261
//
ID   DNA8-27_AP  repbase;    DNA;    INV; 763 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   22-APR-2016 (Rel. 21.04, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-27_AP.
XX
NM   DNA8-27_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-763
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1769-1769 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Terminal 14-bp is similar to that of hAT-23_DR.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 763 BP; 251 A; 140 C; 134 G; 235 T; 3 other;
     cagtggcggc tcgtgggttt ttaatgaagt agtgcacatc caaaaaaaat acacgaataa        60
     ataataataa tataatatta atatacgtta atgtcggtcg tcgatgaaaa acagaaacac       120
     gattgtcacg attaatgttt tgaatttccg ataatgatcg actactgact agctaatatt       180
     atcagctgat aatcggaata taataaataa acgagactac gagagtaaaa ataaacttta       240
     ataacataat aatgccgatg ccgacgcgca acgacgctgc tgcgacgcga cgtcgaaaat       300
     aattcgctga aaacaattta attggctatg tgcacaccat agacctatta ctagttaatt       360
     taattggcta tgtgcacaca aacgaatgtg cacaccaatt ccattataac gcgggttgcg       420
     tgtttcgact tgctttaatt tttacactgt acaaatgtgc acagcgattg tgtgcacnac       480
     tgcagtactg ccactataat agtacactat aataatacac gccgataccg ttccgtcgcg       540
     gacggccgtt cggccgtcga aataacccac tccaaatatt aaatataata ttatatatta       600
     ttattttcnt natattctga atttacgttt ttatattttt aaaaataatc ctaattacat       660
     agtaggtact tagttgtatt attgtgattt atgttttcaa tttttcttga ggttgggtag       720
     gtagtgcacg tgcacttgtg cacatacaca cgagccgcca ctg                         763
//
ID   DNA8-28B_AP repbase;    DNA;    INV; 859 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-28B_AP.
XX
NM   DNA8-28B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-859
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1965-1965 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Note the imperfect TIRs.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 859 BP; 268 A; 149 C; 169 G; 273 T; 0 other;
     ggctaaagtg cactttacca accccctcac gattttcaaa tttttttttt caaaagactt        60
     gttttttatg cttaaaacga tggtgtaaat tttttttccc ggaaactatt attttagaag       120
     ttatagcctt ccaaagttta cgattttacg tttatgcgca tgcgcgcaac gctacttgac       180
     tgccacgcgc agcgcctata acaaatttta atttttttta cgtattttaa caagttttgg       240
     gacatagtag ttttgggtaa taatattgtg aatcacgtca taatacatgt tttgaaccgg       300
     tagaatagag aaaagtttag gtcacccgtt tagtaagttt agatatagaa tataggttaa       360
     taggtaacca ttagtcggtc atctacctgc gaagataatt gctttttaac aactttgttt       420
     aattccgagg cctacccaag gtggttttgc acagcaaatc gggggatatt ttcgttttta       480
     attgtccgag cgagcgcagc gagcgagtga ccccgctcgg tgactcggtg caacaaaaat       540
     gcaattttct taaccctgtg acccacttgg ggaggtgttg catagcaaat cggggataaa       600
     ttattattgc accatcgttt taaacaggtt agaatacgta agtacaaaaa aataacaaaa       660
     atggtcttcc gcgcgacatt atagtagtgt tgcgcgcatg cgaataaacg taaaatcgca       720
     aactttggaa ggctataact tctaaaataa tagtttccgg gaaaaaaaat ttacaccatc       780
     gttttaagca taaaaaacca agtcttttga aaaaaaaaat ttgaaaatcg tgagggggtt       840
     ggtaaagtgc atttgttcc                                                    859
//
ID   DNA8-28_AP  repbase;    DNA;    INV; 1034 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-28_AP.
XX
NM   DNA8-28_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1034
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1770-1770 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1034 BP; 292 A; 165 C; 214 G; 362 T; 1 other;
     cagggccgta tttaaggggg ggcaacgggg tacatttgcc ccgggcggcc aatttttgac        60
     acatttaggg gggcggccag gcgccggtgt atattatatg aataacattt tttttggtaa       120
     gaatttgctt gagtacctat acttggattt tttgcattgc atgactatga tacggccatt       180
     tggcgtcatt tactcgtttt gtcaatcaat gataactact aatttttgta atttttttta       240
     ggctaaaatg cactttacca cgccccttac gaatttcaaa atttaaaaga cgtgtttttc       300
     aacgctgatt tcgaaactgt ttaaattttt ttgcggaaac cattattttg gaagttatag       360
     ccatccaaag tttgcgattt tacgtttata cgcatgcgcg caacactact ttaatgctgc       420
     gcggaggaac tcgtgtataa tatacgatag taaatatata gtataatata cttatgttac       480
     aggtatggct tttcaacaag attgtttaat tctgaaggct acccaaggtg gttttacaca       540
     gnaaatcggg ggatgttttc gatttttttg ttcgagcgca gtacattatg tgctttttaa       600
     caaccttgtt taattccgag gcctgcccaa ggtggtttta cacaacaaat cgaggcatat       660
     ttttgttttt tttgttaaaa atcgtaaaaa aaattttatg gtgctgcgcg tggcagtcaa       720
     gtagcgttgc acgcatgcgc ataaacgtaa aatcgcaaac tttggatggc tataacttcc       780
     aaaattttta aattcgtgag gggcatggta aagtgcattt gttccttttt ttatagtgta       840
     caattttatg ttgttatacg ttttgacagt aattaaaata atgcatcatc gtggtctgtt       900
     tttaacaaaa tgttcataaa taaataacta taaccaaacg attaaaaaac ggattaatta       960
     tttttttttt ttgggggggg gggggcgtac aaatattgtt gacccagggc gcaaaaattg      1020
     taaatacggc cctg                                                        1034
//
ID   DNA8-29_AP  repbase;    DNA;    INV; 771 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-29_AP.
XX
NM   DNA8-29_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-771
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1771-1771 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 771 BP; 269 A; 135 C; 136 G; 229 T; 2 other;
     caggggcgcc atttggrggg gagcagggta tactttggct cccctatttt tttttgtgtc        60
     ttattggcct ggattaaaat ttagaatgcg ccgacggctg tcccgagccc aaattctccc       120
     actctcgcac tcaatcgtgc acgacggtcg ccgatcaaag cttcccgaca agcatacccc       180
     gatttcaaat aaattgtacg taaacgcgta tattatagtg gtactaattg gaactggctg       240
     tatatggttc acaaaggact gatagcactg cacgcacgtc gccgtcgcat atcggtggtt       300
     gttcttattg atagcggtag aaaaagaaga tgctaacaaa atagatttag atgaagcagt       360
     agatagattt tcgaaactaa aaagtagaag gtataagcta gaatagcata aataattaaa       420
     aaaactaatg aatactgtaa gtctgtaact gtatgaaata ttgtattatt attaaattat       480
     ttattataat aagtaaataa atatattgta ttcattttat ttggaataaa ttgcattgaa       540
     taaatgtaga tacctatacc tgtaccaaaa ggcaaacaaa ttattaatga ataatttgaa       600
     ttcattaaaa tatacccttt aagagcytaa ccccatacaa tcgacttaca cacaataaac       660
     gatattaaac gatatctgta tttactattt ttaaaaagtg gcctgacgaa aaaaaaaatt       720
     ggcctgctta aatattggca cccctattat aaaactcaaa tggcgcccct g                771
//
ID   DNA8-2_AAe  repbase;    DNA;    INV; 2744 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   27-NOV-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous; DNA8-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2744
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1282-1282 (2011).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. 8-bp TSDs.
CC   The region 1578-1756 is an insertion of a Gecko-like SINE, which
CC   generated TSDs of GAATTGATGT.
XX
SQ   Sequence 2744 BP; 960 A; 474 C; 440 G; 870 T; 0 other;
     catgggcgta aatagccatc agacttgagg ggggccacgg ccccttctca tgagagataa        60
     aagtcgtaaa ggatttagat aacttaacaa tgcttgtttc gataatattt gtgaaccgat       120
     tatagtggcg cactttcata cagaggtaga tcaaaaccta aaaatcgtcc aaaaccgact       180
     gatcaacttt cttagatacc aaatgtcact tttatggaaa aatagtaaaa atttatttaa       240
     aaatctatgt tttcgtttta tattgccaag atgacgtatt caacccaatc ttatagatct       300
     cgaatagaat acaaggattt aaaagcagat tataatcagg atttaccttt ccaattcgat       360
     ttgaactaga tgtttgcaaa gttataaaac aagataaaga tttaaatgta tcacccaagc       420
     ctttgaaaaa aatgcttgct agtttgaaaa tatggattat tgttgctcag catttctgta       480
     gcaaacgatt catttctcta aacctctcga aaccaaaatt tgacatagga ttgaataata       540
     ccttttttgt tagagttaaa aactttaaat cctaaagctg cttggctacc atcatattga       600
     aggattgaag tttttttgta ttcaaataaa gctgtcgtca gcaaattcgt acgataacag       660
     ttgtttgaag aaaacaggat ggaaggtatt ttgctcatgg atttattaat atccaatcat       720
     agtaaggcag agcaaaagtt cgaccttagt ggtataatca aaatttttat aaaaacaata       780
     gcagttgaaa ataaatacca tacagtgaac cttcaacata tttgctataa tttcgctgat       840
     tgtcttaaac gaacttttgc cccatcggtg gggctcgaca cttttacgac agacatactt       900
     tatataaact tatgtttaca gataaataca ctctaatttt tcatcaaaaa attgcccaaa       960
     gcccaaaaaa aaacgttttt tcgcaaaact aggtgaaaat gtgaaatgtt ggtgactttt      1020
     ttcgcacgat caggcaaatt tcgctaaact tgaagataat atgtgaattt ggggtaattt      1080
     gtaaatttct ctgctagatt atatgggtcg aacttttggc ccgctgattt gaacttttgc      1140
     cacactatgg gccaaaaatt gattccaagc aattatgtag taactaatac acctcaaagc      1200
     atccttatga tgcctaaaaa cgcccttaca taaaaaatca aagaagattt tatccttatt      1260
     tatttccatg caatgaaagt ttgatcaaaa attataatgt ttacgtcaaa aaacaacaaa      1320
     tagccattat ttttccaaat ctcaatcgat tcttatgata tttgtagtga aagtctctta      1380
     cttgaacact atggcattta taagcttgat ttgatttgag ctagaaatcc taaacattcg      1440
     atatcttatc attaatctag aaacaagttt tatctatttt tcttacaaat aacgcaacgt      1500
     cttctaatta cagaaatttt acatgaatgc atatatattt ataacgaaaa aaaaacatct      1560
     ctgaaccgaa ttgatgtggt gacggacctg gtgtagaaca cacgtcgagg acctgggatc      1620
     gaatcccatt ctggaggtag tcacttatga ctcaaaaagt aatagtggcg acttcatttg      1680
     gaagggaagc gaagctgttg gtctcgaaat gaactagccc agggttaaaa atctcgttaa      1740
     caaagacaaa caaaaagaat tgatgtaatg tccatataaa ctacgtaaga cgccaaaaaa      1800
     attggcgcaa gaaaaaataa taaaaataaa taaaaaaagg gtcatattat aaacacttat      1860
     agaagaatta aaagcgtgtc ttaaaacaat cttcagtatg aataaggttt tacgtttgtt      1920
     ctacagaaac aaatagtaac atggtcttat tatcttttca atctaaaaac ttcagaaaat      1980
     tggtgtcaac ataacattga aaaaaaaatt gttgcgacat ctacgatttt acacggttcg      2040
     atgtggtttt tgtacgaatc cgccactatc ttactatacg taaaggaatt tcaatgttca      2100
     cagttttgct gtcacatttg aatgcaactg cttcactgtc gtctacttac cagcagttca      2160
     tatctgttcc cgacgtctcg gagacaaatt tatcgaatgg ctcataaatt tgaatatgaa      2220
     acatttaaaa gttcgcgaaa aatgtataca aacaaagttc gcttgctgca ccattgttta      2280
     ttttcgagat tttttttttg tagaacttta ccataactct catacacaaa catttcccag      2340
     taacaacgat tcgttctaga taattgatca caaaatatcg cagcttgttt taaaatatga      2400
     aaagactttg gttttctaat taacaatacc actacaaatg gatcaagcca gttcttctaa      2460
     ttctaaaaca tgcttcaatg aatttcaata tcgggaaagg caaaaaggaa acagtatggc      2520
     agtatgtgac gttttaaaat tacatattgc tattgcctgt caaacaatga tcatccataa      2580
     atttatattc aaaatgcatt taatgcgtct agtatcataa gtgtttgata ctaaaaacta      2640
     gttttaactg tattgtcatt tcttctccat tttttttcgg gggggccaag cccatggttc      2700
     gggggggcca ggccccccct ggcccctccc tatttacgcc aatg                       2744
//
ID   DNA8-2_AP   repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_AP.
XX
NM   DNA8-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-236
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1744-1744 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 236 BP; 77 A; 59 C; 46 G; 54 T; 0 other;
     cagtggcgta gcgaacttta aatcatatgg aagcaaacaa attatttatg acctacccca        60
     cccaactcca actgatgtat acgatactca tatgctcaaa tagggggttg gggtagcacc       120
     caaaataaag ttcaaagact gaccgtgtgt atgggcttta tgaggttatg acccaccacc       180
     accccccaga aaccagaagc aattgcttct gaaaaacatg attcgctacg ccactg           236
//
ID   DNA8-2_BTa  repbase;    DNA;    INV; 382 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-382
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 877-877 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 382 BP; 104 A; 90 C; 92 G; 96 T; 0 other;
     cagtgtttga aactcggcat gaagtcttag cagccatctg gcctgcaact ttttttcttg        60
     gggccatctc gatttcttag gggccaaaat gaaaaattgc cctttcgaaa tgcctcgagt       120
     caggaatacc ccattgaata gcccaatgcc ataatgttag gacaagaccc gatgtgtcac       180
     gaaacttgac gaagacggag gggaagaatt gataacacga cacgacgtgg caccttgcag       240
     aatgcgccga aaaatcccga aaacggagtt taacaacgat tttcttagcg gccaagcttg       300
     gccgctagtt tcatttctta gcggccaaag gcgatttctt accggcaaat tgctgtttgg       360
     ccggcgtgtg tttcaaacac tg                                                382
//
ID   DNA8-2_CQ   repbase;    DNA;    INV; 2184 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2184
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 79-79 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity. 8bp TSDs.
XX
SQ   Sequence 2184 BP; 745 A; 324 C; 392 G; 723 T; 0 other;
     cagggctgtg gagtcggagt cggagtcgga gccggagtcg gtggagtcgg gtctttttgg        60
     ggacctggag tcggagtcgg agtcggagtc gtcaaaactc gaacagctgg agtcggagtc       120
     ggagccggag tcggctaaat tttaagagct ggagtcggag tcggagtcgg agccgaagat       180
     ttctgataac ccggagtcgg agtcggagcc ggagttatct taaattcaac aaaaaatatg       240
     ttttttttat tgttcagtat ttcctatata acagcttaat ttacaaaaca tcttatattt       300
     ttaattgatt tatcagatgc cattatgttt ttgaagcttt ttattgtgat tgaaaagctc       360
     taattgtgtt attacactat aatcactaaa tgataacctc ttacccaagt atgtagtatc       420
     ataattcaaa aaataataaa aaaaatattg gttatgtagt cagacatatc taattgattc       480
     ttgatgcttc cttttgccta tatttatgtg ccctttcaat tcaaatttga ccaaatttca       540
     tccagttatt tctgaaaaaa gtacacacac agtcatcttt taccccgata gcgaatgtct       600
     tggaggtttt aagttaaatc attttttagg aaaaaaatac gaggtacata aaaagattat       660
     aaatagtaat cactgttttt gcagatcgaa aaagagtcac tgacagttta acttttgtaa       720
     caaataatca acgataataa caatctctta cttggaactc aacatgcgca ttttgtttat       780
     aactgagtac aagaaaatca aagtgttgca tttaaaataa ttgaaactaa caaaaaatgt       840
     caaaagaagt tgcaacaaat ttgaaataat cattgattgt tgatgttgat gttgatttta       900
     ggtaaactat tttgatatcg ttgcaaatta tcgttgaaca aatctcaaga attcagtaca       960
     aaaatgaact aataaaaaaa tgtatagaac aaaatatagg attttaattt atttttcaaa      1020
     tattataata aaaaaaacag aatcaaaata ttatcaactg gtacgaattt tctcatactg      1080
     tatgtcccac gccaatatga cggaaggtga taatcattgc aaatcaatgt accttaaaaa      1140
     aatgaaatat ttgtgaccta gaaaatattt tacttgtgga tatttgtttt ttattatatt      1200
     ttaagttttt tcatatattt tgatggaggc gcaagatcat ccataaagct tcgttttagg      1260
     tgaagattca cgaagtatcg tgcgcctcct ttttaaagta tataaaattt taaaattaaa      1320
     ataaattaaa aatttccagg gtaaaatatt ttccatgtca cagatatttg aaaaggacat      1380
     cttaagcgtc ctttccacga agaaattgtt tagatacatt gatttgcaat aataatctcc      1440
     ttcagccatg gcgtgatgtc catgtacgtc ttaaaaaaaa acaaaaaaaa gtttcgttta      1500
     aaattgtcat ttaaaaaaca aggtgcctgt cactgtgctt cttacaaatg tcagcctgaa      1560
     agtgagcaaa ttgaatttta atgttcaata gatcattaag gccaggtttc ttttagttat      1620
     tcattcaaaa ataacaattt aatatttaaa tttattagct ttgaaaaaaa tattttcaaa      1680
     tttgaggtta agcaaataaa tccaaattta cttacaaaac tgttcttctc aaaatgcctc      1740
     taaaactgaa gatatttttt gatttctgtt tccataacgt ataaaacttg taacctagaa      1800
     actttttttc cgtttattta ctttacttta cttttactta acttattttt cttgagaaaa      1860
     acatgacgct tagagagtat ttaaataatc ctatttatca atgttttaaa aataattaac      1920
     taataatagt taactaactt ttgaaacatt taaaaatatg tggagtcgga gtcggagtcg      1980
     gagccaacca tttgttgaaa gctggagtcg gagtcggagt cggagtcggc tagagttggt      2040
     aggccggagt cggagtcgga gtcggagcca accatttgtt gaaagccgga gccggagtcg      2100
     gagtcggagt cggctaatct gagaaagccg gagtcggagt cggagtcgga gtcgtttgaa      2160
     atatgacccg actccgcagc cctg                                             2184
//
ID   DNA8-2_LMi  repbase;    DNA;    INV; 1155 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1155
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2974-2974 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1155 BP; 366 A; 218 C; 228 G; 343 T; 0 other;
     caggcccggc ggttcatatt ttttaagagt gggtagttgt ccaaaagttg ccccctctaa        60
     ttcccccccc cccccccccc cgctgtcagt aatctctata cataaaaatg ttctgttggt       120
     ttgtgtatag ccgttaatct ccgaaagttc ttgaccgatt gctttgaaat tttgacacaa       180
     cgttgcattg taatacagga aggtttctag gtacatattt cttgaatata ttgtatatta       240
     cttttgcgat ttttcgtatc aacgtttgcc cattataaaa tttatataaa ttcatatatg       300
     acatatactg aaaaattatg tatataaaac atgcgcatat tccagtagaa cgttgtgtta       360
     aaatttcaaa acattcggtc aagaactttc ggagatataa gattttgaac ataacactaa       420
     acatggctct aggttagata tagttctaag aggagacaga ggaggcggag gaaattgatg       480
     tagagagggg gaaggggacg aacaggtaga gagtgatgat gagatggata ttaacacgca       540
     attactcgtt aaacgagaaa ggttcattgc gacaaccgtt tcaaaaactt ttctgtactt       600
     ttagttctat ttcactcgct gtaatgtatg gtctaaaatg catcgaacag taagctaccc       660
     gctatcgaac tttttgaata aattacgtac acatacttga caaagagtgt cattttaaaa       720
     cgactgttac gaattaagaa aaggttaatg ttttattaga aagctaagat gctgtactac       780
     cacgtgtcaa aaaatcagat ctttaaaccg tatgctttct tcaaaataga gtgagaagcg       840
     ttatgaaact aaaaactcac gcagaatgaa aattaggcat tttcgatttt cacaagcaat       900
     ggaaaacatg taaggaaaaa ataagttgat aaaacgatgt ggggtggtcc tatataccgt       960
     caacagtttt tacagcgtga aaatcggaaa agtgatttcc ccctttttcc cagcccggcc      1020
     cgaccgggag tggccatccc cgcgcggctc aatgtaaata aatattcctt caaatcaaga      1080
     gtgggttatt ttacccactc tcaatttttt gagtgggtac agctaccgcg gtacccactt      1140
     caaccgccgg gcctg                                                       1155
//
ID   DNA8-2_PBa  repbase;    DNA;    INV; 1219 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1219
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 603-603 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1219 BP; 402 A; 184 C; 191 G; 442 T; 0 other;
     cagtgctcgg aattagttgc ccttttcggt ccgatttcga aggcgacgcc tactgcttcc        60
     cccactatcg ctcgaagctc gacggccgag ccgccgcacg ctttcaggag cgtttcatat       120
     taaaaatgcg cccaaattgt atattccgct aaaccattat taaagcaatt tctttattaa       180
     attattttta tttttacaaa cattaaattt tctttttaac atattttatg tgttttataa       240
     tatttaatga taataaatac gtttataata aaattattac atataataat tagaataatt       300
     aaagttttaa caataggttt ccacatcact cgtaaggtat tattgacgta tttttttaaa       360
     gtggtttcct tagtaatttc cttacttaat agtttcctat tttattaaaa agaatcaaat       420
     atatgacttg acaagaaatg aaaaataaaa gcgtgaccgg tataactttt gtttgtttag       480
     atgttagatg gaaaattaat ttcattttct acgttgtatg catgatttta gtagagatga       540
     tatatcaata gaaattttgg aagaactggt ttgcatcagc agagatagta atgcatcgtt       600
     caaagaacgt ttttcttttc ttgtgcatca ctatcctcgt tgatgcgaac tagttcttct       660
     aaaatttctg tggatatatc atctctagta gaatcgtgta aacgacccaa aaaatcaaat       720
     tagtattttt atacgaattg ctcttccttt cgttttttta ttctttatat atcatatttt       780
     acaatataga attttatttt cctgccaagc catatatttg atttcttatt ttttaatgga       840
     ataggcctac tggggaaacc actaaaaaga aaacgtgtca acaataatac ctcatgggtg       900
     atgcggaaac ctattgttaa aactttaatt attctaatta ttctgtaata attttattat       960
     aaacgtattt attatcatta aatattataa aacacataaa atatgttaaa aagaaaattt      1020
     aatgtttgta aaaataaaaa taatttaata aagaaattga tttaataata gtttggcgga      1080
     aatggtgcat ttttaatata agacgttcct gaggcataag gctacggcgg ctcggccgtc      1140
     aagtctcgag cggtagtggg ggaactgtag gcgtcgcctt cgaaatcgag ccgaaaaggg      1200
     caactaattc cgagcactg                                                   1219
//
ID   DNA8-2_TCa  repbase;    DNA;    INV; 1185 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-2_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1185
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 669-669 (2009).
XX
DR   [1] (Consensus)
XX
CC   8bp TSD. Unclassified.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1185 BP; 381 A; 190 C; 207 G; 407 T; 0 other;
     accagtgtga ggaaatttta tggggtggcc atgaggccac aaccgatcag ctgactcgtc        60
     gtagcgctct cgcgatgttc atatttatcg atgaaatggt ccgttatagc gcgtgcattg       120
     gcgtagttta ctaggggttt atacaattaa tgttaccggt tgattcgtca gaaacgttac       180
     gatttgtata tttttttaaa aaggacttta aagaaggatt atttagttat ctacaaaatg       240
     tgctcgaggt gaaatcgcag cgtatttccc tttgaaacgt ggtgtggttg aaaacatttc       300
     aagggctaaa aatggtaaat aattaaaaaa atattaatgt cacaccaaag aatactttga       360
     aatgaattac aatttcgtaa tttagttcta ctgggtcact tttatgcttt ttaaataagt       420
     acatgagata aaaatgttct tttgactttt tagatattat taaaattaac agagagttag       480
     ggcggttaaa agtaaaggta taatattaat agataagtga cattaattat tttttaatta       540
     tttacgaatt acgattttta gctctcgaaa tgttatcaaa ggcgatgaac acgcttcaga       600
     gggaaatacg gttcggtttc acctcaggcg cattttgcag taattttaaa ttgcaataac       660
     ttggtgagtc ttacagataa cgaaatgatt cttgcaccaa aaatttattt caagtattag       720
     ctttatttcg tctcgattat gtgggagtct atcttttaaa ttaaaaaact ttctcgcatc       780
     tcgaaaattt cactacacaa ttatgcaacg ttacaagaaa atgtaatttt tttggtttcc       840
     ctttatcaaa actcaacctt gttaaactac gtataaatct gcatttattg aaaatttgtt       900
     tgcaaaaaaa acggagtttc tagctttatc cagaaggaag atatgagtat gtaaacgcaa       960
     aatgtgtcca attttaggtg tttgcaaatt tttagctaaa acgtcttttc agccccttcg      1020
     cgagggttga aacaaaaaat tctttgtcta aacatttttt aatactcttt cctaacttat      1080
     atcaacaatg caagctgttc cacaacattt cgatttaaag gtttatctga ctgcaagcgc      1140
     gcgcccatgc actaaccttc gcccataaaa tttcctcaca ctggt                      1185
//
ID   DNA8-30_AP  repbase;    DNA;    INV; 710 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-30_AP.
XX
NM   DNA8-30_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-710
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1772-1772 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 710 BP; 256 A; 105 C; 112 G; 234 T; 3 other;
     caggggcgtc atttgggggg gggggggggg grtgcagggt gtacatttgc accaactttt        60
     ttttaaaatg ccttctttgg cctgccaaca ataaatataa gcgccgatat acctaagtgt       120
     tttatattat atattatatt ttatattttt tcagtattaa aaaaaaatgt attgtactaa       180
     tgtttaattt ccaagaatgt ttgatgtgat tttgtggtcc cacaatatta taattgataa       240
     aattataaca caaacattgt gaagaaggat accaataaaa taaatttctg gttttattaa       300
     gctagctata ttatatattt tgagtatgca gggagaaaaa atgtgtaggt taggttcggt       360
     taggtatttt attataaagg tgatttatac ccatacattt atttaccaag tgtaaatacm       420
     actgtaaaat accactgtac actggtatcc acaatataaa ataaatacst acattaaaag       480
     tacctacaca tagttcgtca aaaatagtaa caatattgtg atattttcat actaatataa       540
     gtgacatatt aaataaatta tacaaatatt ctacagtttt tgtccccact ttaacccccc       600
     ccccccaaaa aaaaaaaaaa aaataaaatt ttctatgtgg cctggtaatg atctgaatgg       660
     cctgcaaaca ttttggcacc aacaaaaaaa aagttgaaat gacgcccctg                  710
//
ID   DNA8-31_AP  repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-31_AP.
XX
NM   DNA8-31_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-595
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1773-1773 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 595 BP; 259 A; 80 C; 67 G; 189 T; 0 other;
     cagggcttgc aaacgttata ataacgttat gattataacg ttatatttga caaaaaacga        60
     ttgaaatttg taaacgttat tataacggaa agcgataatc aaaaataatt aaataccgca       120
     aaacaaaaca taacgattaa caaaatatat tatattatat cattaaacaa aacataacgc       180
     aaaacgtaat ttatagaata tcattaaacg aaaaataacg caaaacgtaa tttatagaat       240
     atcattgaac gaaaaataac gcaaaacgaa atattttaaa atctatttat ttaaaaggtc       300
     tattggtttc gtagaaacat ttatttcatg caaacaatct aagaattgat tatattatat       360
     tccgtatccg ggccattacc tacccgcatt agttattatt tttaaattta ataggtatta       420
     acactatttt aaataacgat aaacgcaaaa cttgtataac gttttaattc taaataacga       480
     taaacgcaaa acttggataa cgttttaatt ctaaataacg ataaacgcaa aaattgtgta       540
     acgttttaat tgtaaataac ataaaacgga attttttttt caaatgcaag ccctg            595
//
ID   DNA8-32_AP  repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   22-JUL-2015 (Rel. 20.07, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-32_AP.
XX
NM   DNA8-32_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-240
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1774-1774 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
CC   Reclassified as hAT type.
XX
SQ   Sequence 240 BP; 57 A; 49 C; 48 G; 86 T; 0 other;
     cagggatggg caactggcgg cccgcgtacc ttttttatct ggcccgcgct acattttcaa        60
     atttcgtgtt ttcgtgtttt gtagtaatta ttttaaaaat gtccgctaaa aagcgtaaaa       120
     aataaatgtt agtaaatttg aaggaccttt ttttttttgc tttctcctat gcactgcggc       180
     ccgctagatt ttaaagtact taaaagtggc ccgctagtta ctttgagttg cccatccctg       240
//
ID   DNA8-33_AP  repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   24-AUG-2009 (Rel. 14.08, Created)
DT   22-JUL-2015 (Rel. 20.07, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-33_AP.
XX
NM   DNA8-33_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-328
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1775-1775 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
CC   Reclassified as hAT element.
XX
SQ   Sequence 328 BP; 96 A; 51 C; 49 G; 132 T; 0 other;
     cagggatggg caactggcgg cccgcgtacc atttttcact ggcccgtgct acatttcaat        60
     ttagtttata aaaatataaa atgttaagat ttttctgtat tttattttat tatatttata       120
     aaattattaa aaccgatata atgtttatcg taaaaagtag atataaattc ttatctagta       180
     ttgaactatt gaatgtaaac aatattatat tatttatagg cgtatagtta acattaggtt       240
     tttttttttg ctttctatgt tctctggccc gctagatttt cgcacattca aaattggccc       300
     tctagtatca ttgagttgcc catccctg                                          328
//
ID   DNA8-34_AP  repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   24-AUG-2009 (Rel. 14.08, Created)
DT   24-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-34_AP.
XX
NM   DNA8-34_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-194
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1776-1776 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Putative hAT element.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 194 BP; 52 A; 43 C; 35 G; 64 T; 0 other;
     caggggtggc caaaccgcgg ctcgcgtcat agacttttgc ggctcgcatc ttaacgtaac        60
     attagccaag ataaaaaaaa aaaaggtcat ataatataca ataatatgac cttttttttt       120
     ttttacatct tggctcttca atttttatta atatatttgg tggctcgcga gtctcttctc       180
     gctggccacc cctg                                                         194
//
ID   DNA8-35_AP  repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   24-AUG-2009 (Rel. 14.08, Created)
DT   24-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-35_AP.
XX
NM   DNA8-35_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-237
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1777-1777 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 237 BP; 78 A; 43 C; 38 G; 78 T; 0 other;
     catagatatt aaagaatgga taggccattt acgggaacga acatgaacat ttgttgaggt        60
     tatagaggtc ttatcacaaa tagatatatg tataattatt gtatataatt tatgataaga       120
     cctctgtcag aatgagaagc aatgataaaa aacagtcttt ctctcttccc catcccggcc       180
     ccatgaccct ctattttgtt aatatagcca tggcctatcc attctttaat atctatg          237
//
ID   DNA8-36_AP  repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-36_AP.
XX
NM   DNA8-36_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-262
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1966-1966 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 262 BP; 80 A; 43 C; 45 G; 94 T; 0 other;
     cacagatata tactaatact agatagccgt cttctcgtta tcagtgaaac acgccgccat        60
     atgcaaagaa tactactcga taaacaaacg ttatcacata gactaattta ctattataat       120
     gaatatgata ttatattgat aatagtctaa tattgataac gtttgtttat cgagttgtct       180
     tctttgcata tggcgtcgcg tttcagctta ttctgtggtg gtgtattcga agacggctat       240
     ctagtattag tatatatctg tg                                                262
//
ID   DNA8-37_AP  repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-37_AP.
XX
NM   DNA8-37_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-404
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1967-1967 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 404 BP; 114 A; 98 C; 76 G; 116 T; 0 other;
     cataggcgtg cgcagccctc ttgttcaggg tatgcagaag cagtggcgga tccaggagga        60
     gggggggcaa aagggacatt ctccccccaa tcgccttagt ttcccattgt ttacagtgtt       120
     tagccaattt tgtacttttt cctccccccc caaattaagc actggattac cacaggcacc       180
     ccctgaaagt tattttaaga atgtaaaatt ctgataaaat atatacacaa tacacaaata       240
     gtttcgagtt taaacataat aatatgtaca ctcctgggcc gcactataat tagtaattat       300
     ttttcttgcg cacaaaaatt ttttttctaa aaacgatttt tgccgctcaa agagcttcag       360
     ggtatgcagc tgcataccct gcataccccc tgcgcacgcc tatg                        404
//
ID   DNA8-38_AP  repbase;    DNA;    INV; 486 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-38_AP.
XX
NM   DNA8-38_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-486
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1968-1968 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 486 BP; 210 A; 42 C; 58 G; 176 T; 0 other;
     cagtgttcgg attagataag tattttttta tctagataaa gataaagata atgcaactca        60
     aatgtatcta gatagagata aaagataact taactcatat ttatctagat aaagataaag       120
     ataaatactt ttttatctag ataaaaaaaa gatacaatta ttttttaaat ggttataaat       180
     tttggtatat tttagttggg cactaggaac ataataataa taatgatata aataaaaata       240
     attacattat ttataaacca taaactttgt ttgagaatct gtataaatat ttaaaaattt       300
     agtacaattt cgcgattttt atcaataaaa aatgtatcta gatgaattta tttagattag       360
     taaaaaaatt atctaagatg aacgtttaga taccttgtaa ctatttatct agataagata       420
     aaagatgaac aaataattat ctagatattc atctagataa atttatctag ataagtccga       480
     acactg                                                                  486
//
ID   DNA8-39_AP  repbase;    DNA;    INV; 1069 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-39_AP.
XX
NM   DNA8-39_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1069
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1969-1969 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. It includes Sola-like fragment at positions 493-828
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1069 BP; 407 A; 151 C; 149 G; 360 T; 2 other;
     cagtcttggg taaaatactt ttgaaaagta tttggaataa atactcgaat acttatgaaa        60
     aatagtattc cgaatatgta ttcgaatact tgataaatat aatattccga ataaagtatt       120
     tggaatacta taaaagtatt ccgaatactt aaaaatattt ttgataaata tatgaaatga       180
     taccagttat aattgaaggg tggaaatgca aaaggtggta ttgccaaaaa ccaaaatgtt       240
     cacaaatcaa ggaaaactgt aacacatttt ctgacgacta taaacactca gaataagttt       300
     atttatatgt aaaaaataaa aagtaaacga ttgacagtgt caaaataaat ctacctaaat       360
     tgtaaacatt gtttttaatg ctttaaaaat ttcgtgtcag accaaaacgt ggtattgcag       420
     gttttgaaaa ggtaatggca atatcacgtt ttaaagttgt tcctatttct gttgatgcaa       480
     aacgcattat tgccggcaat accacgtttt gaagaaaaat gtaatattgg caataccacg       540
     ttttgcaatg atatcaagta tgctccaata ctaataacat gggcaataat acgttttgac       600
     ttgaacatga ttgaatatgt aataccacgt tttgcnttga cgttaaatgt ggcaatatca       660
     cgttatgcat tgaacatcag ttttaaaatc gattttattc acaaaagtaa tcgatacaat       720
     ttaattctga ctgcaaaatc gaattcctca cattttttcc cataaaaatc gatgtttaac       780
     tcgattttcg aaattttggc aataccacgt tttgcatttt cacccttcaa ttttgatatt       840
     gtatgatatt aatagatatt attgattcca aatttccaac tcataaaata taaattttgt       900
     atttttgttt taaatcaaat gcaagggaat aacatgcaaa tcaaacaatt taatttccat       960
     actataaaag tattccgaat aaagtattca gaatacatca caaaatactt ttggaaatag      1020
     tattctaaaa gtattcggaa tactntattc ggaatactac ccaagactg                  1069
//
ID   DNA8-3_AP   repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-3_AP.
XX
NM   DNA8-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-225
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1745-1745 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 225 BP; 66 A; 29 C; 61 G; 69 T; 0 other;
     cagtggcgtg ccgaacagtc attttttgag gcaattgcct caagggaaat ttgggtgggt        60
     gggtgggtgt gttagtatag atgtgcaact tatacctaaa aaaacttaat aatatttatt       120
     attttgaata ataaaaaaaa atagtgaaaa aactgttggt ggtggggagg gggatcaaat       180
     tgtatagttt gcctcaggtc tgcttgtcag ttcggcacgc cactg                       225
//
ID   DNA8-3_BTa  repbase;    DNA;    INV; 2269 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2269
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 878-878 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2269 BP; 706 A; 437 C; 432 G; 694 T; 0 other;
     gagcggagtt caatcgtcga catcggcaga agtcgaattc gaaaaaaggg cagtcgtcga        60
     ctcgaagcga acgggtcgaa tggttccgcg aactgccgcg aatgtcatga acattcgccg       120
     gggcgagttc ggacgagttt gttattgttt ctcattaaac taaccccttt tgactttgag       180
     gacattagta atagtaatag tacatctacc tatttaatag tcaagaatgt ctaatatttt       240
     tcactgaata aattttcgca tgtcgtcgga taaattattt ttttggcagt gtgtctgttt       300
     agtatgtagt aatttcttgc ctagccactg ctgttcattg tcggaacggt gggaagttaa       360
     tcgaagctgt tcaatccgga agtgtttttg agtcagttta aattaattaa ttaatttctt       420
     tttcagtctg agccctaatt gagtggacat tctacgactt tcgcgtaggt aggtggaaaa       480
     atccactttt tgaggaaaaa gtagtctttc agcagttcat agattatctc cactcgctac       540
     cacgccaaag gagcatatca ttgcgtctga tcattgaagg tttcttgaga accaagttga       600
     taaaaatgca gatgaaactg tagcttttct tgttcttgaa aaactttaat ggcagatttt       660
     cttatacagc gagggaaacg tctctgctcc atggtcatag tcgccatgac tgaagatttc       720
     ttcgatggta aagttcctta tcacctttaa tacgctttaa tatcacaggt ctttacatct       780
     acctcattgt aagttgcttt caagcctcta ctttgacaac tttattcttg acgtggaagc       840
     caacgttttg ttacccacag gagttacttg gaaataaata cattcatgta ggatacctag       900
     aatttactac cgacacagtt tcctttgctt caatctgctt ttgcgcagtt cctcatactg       960
     taacgtgaca agactgagtc atagaagggt gcctcggctc cctactaaag agagacaggg      1020
     tgctgaaaac acgaacacaa aaagataaga ggatgaaaca ctaagtatac ttgactgcaa      1080
     aagtgaaaga gccggctgag gcccagcctc aaagaagtac aactggaact tctcacacta      1140
     gtcctaatcg gaacatttta attcaaacat ggaaaaagtt atgacatagg tacctatcga      1200
     gcattctttt tgcacatcgc ggtaggacat gatactttca aagacgagaa aaatcaagtt      1260
     tattttccat gaaattaaaa aaaaaattag gcattttcac cgcgacttgt ttctgaaaac      1320
     acagaaatga gacattgatt tttacacgca acttcataag agtttttcac tttcattgaa      1380
     gaaatttgaa gttcatttta taaatccttc cattttaagg ggatgcataa tgaaggtgac      1440
     atcacttaac cacaatccta tctgcagttg catcatttca gatgttctta aattttttac      1500
     tattttgaag cataacggat cagtacatga agaaaaattg catgtaatgc accgattctg      1560
     agatgctatc aatccatatt ccttgcacaa tggaaatttt tctaggttca ccattgatgt      1620
     gtatgtctaa tcacattaaa agataaaaat aaataaaaaa agccacttag cgccccagct      1680
     gggtcttatt agaaaagata ttaaaaaaac ttaaattccc tccaagtatc agaatggaaa      1740
     aatcctgaag acctctctct tcaaatcatg gtgcaaaatt aagaggagaa cgtttctcca      1800
     aagttcattt tcaattaagt ctattattgg acatagcctt tctcttatga agaaaaggaa      1860
     gacattaata cgctaggctt ttattgctca tcagtcgagg tcaaattaaa aatcgagacc      1920
     tgtttactta ggtatctact ttaagggtca gaaacgaagc ataaatttag tttaatttac      1980
     aaccattgat ggaatttcct gatccattat ggctctcgtt ctgctaagag agctacttaa      2040
     acttagaggt ctttagtgtc gtccacggcg aagacaagca gcctatacat aatgctccat      2100
     ttgcaacaaa cgataaaatg aatatgaaca gtaaaatata atgcacaatg gtgaactagg      2160
     ttcgattggt tcggtgcgtt cgggcatcga cgtatgaccg ttcgcgaatc gacctctgac      2220
     cgttcgccac gaatcgacca ttgccgatgt cgacctttgc tactcgttc                  2269
//
ID   DNA8-3_CQ   repbase;    DNA;    INV; 1769 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1769
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 80-80 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >87%
CC   identity. 8bp TSDs.
XX
SQ   Sequence 1769 BP; 630 A; 230 C; 222 G; 687 T; 0 other;
     caagggtttc cagaagcgtt tattacttgc cagtctgcca attaattact caaattactg        60
     gtccaaaatg attaattaca taaattactt aattactttt cactacgata aaaaacattt       120
     aattttaatt taagtattca tttctacggt tctgaactaa attatttata aatagctcat       180
     tcgatagctc ttctaaaaat tatgctgttt attttttttt ttgtaccgat ctggatattg       240
     cgaattataa ttttaattga aaatagctat aggcgatcaa acttcaaaaa tgcccccact       300
     agaggacgct gaaactttgg gtgatgttta cataatatct tacagcgaat taattggttt       360
     gaaatttgga attgttttat tttattataa aattgacatc atttcaggta aaaaataagt       420
     agctcaattg ctataaacaa taatatttgt tttatggcca atttaacctg ttcattatct       480
     gattcgaaat tccattatgt ttcacgtttc aatcaaccgt acccttatca atcaattgca       540
     aaagaagatt attgaagtcg tgtttgtcat aaaggcaaaa caacatactg tactgtttta       600
     cttcaatgtt tgagttttaa tataattaat tattaattta aaattgatat tcagtttatt       660
     gcaagtttat cgaagttgtt tgaaaaaagg ccccctgatt tttcgagcca aacataaact       720
     ttgacaaata tttgcagcgg ctcttcatga aaattgtgaa attcatcaaa ataacgttaa       780
     gttttaaaat gtttttcaac attggtttga cattactttg catttttttt tctcaagcat       840
     attaaaaaaa tccgttactg aaaatacgga ttatgtgaaa tgtgacaatt acattggatt       900
     taatttgtgc atctgaatat tagtcgattt taatttcact gagtttgatt tttaacattt       960
     gtctcagaca tatttggaaa tttttcggga aaatagttta gctctttaga gagataagga      1020
     ctgtcaattt ctgctgatta tgaaaaaata taaaaattgt atttttcgta ttatttttga      1080
     taattttttt attattttca atatttttta aattattttt aatatacttt tattgatttt      1140
     taaattgcta tcacttgaaa aattgttttt aaaaatgata attcactatt ttttttaatt      1200
     atatgatcca cataaacttt ttttgataat tttgactgcc tattagaagg aaaagcataa      1260
     aaaattaatc aattctaatg tagttcttgc aaaacaaaaa aaaaaacata tttttataat      1320
     tacttaatga aaatgaatag atttcggatt cactaaacat ttttcactgg gtaatatatg      1380
     atggcgttgc cttttgttgt taatcagctt ctataaacaa catgtaaaaa taaattttag      1440
     gagagtttta ggagagaact atggcgaatt aggccttcta catacagagc cagtcttttt      1500
     taatctttat gtttcaatct tatttgaaat taataaaata ctgttataat agattatatg      1560
     taaaaagtaa atagtttcgt agaagaagta caattaaaaa aaatcaatta cttaaattac      1620
     tcaaaaatta cttaaattac caatcaacta cattaaatta ctctaattac cataaattac      1680
     taattaatta aagaattacc taattaccag ctaaaaatca aagtaattat taattacttg      1740
     ccagtccgag gccttgctgg aaacccttg                                        1769
//
ID   DNA8-3_LMi  repbase;    DNA;    INV; 874 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-874
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2975-2975 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 874 BP; 252 A; 179 C; 139 G; 304 T; 0 other;
     ggcttaactc cagaatagcc gatacatccg tagctcaggc tcaaccaatg ttggcaacag        60
     cagtttttcc cgggaatttt gttagccaat cgggtgatag aatccagtat ccaatcatat       120
     ttgcagagtt gttttcgcgg aatatctgaa tgtgtgaaat agagacatct gtctccatcc       180
     gtgagttttt taaaaggaaa taaaaatgct acgttatact aaacgcgtgc gtaccatttt       240
     cgaggcggtt gatgtacctc tgtgactgcc ataaaacata gatctgtctg catcccgtga       300
     gttttttttt ttttaacatg cagaaacaca atgtcgctac aaacatgtat agaatgtctt       360
     tgaaaacaga atctcctact agatacagat aattattcac tacataattg attcttttac       420
     gtaaatgtac attcgtccga cttattcact aagaaatttc attcattctc aattaaaaga       480
     ttttagtcaa atttatataa ttaaatgtta cacgaatgta gcgacttttt ctccatgtag       540
     ttttgtttaa tcttttctct gccgatttat gcatataact ttgtagaatt tctttgcgaa       600
     cctgtaatac gtcttacatt aattcctttc gggtactttc aaattactgt cgtttactct       660
     gataacaaaa cattcgacgc cgtccacaat ttcattggct tcctcaaaat tagctacgat       720
     tggttactta atatgaacag aaaaatgttg tcgctgccta taatctcatt ggctatttga       780
     aacttaccgc gattcgtcat cttcattccc gccacttcat cactgttacc aacattcact       840
     gctacggatg tatcagctat tctggagttt tacc                                   874
//
ID   DNA8-40_AP  repbase;    DNA;    INV; 634 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-40_AP.
XX
NM   DNA8-40_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-634
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1970-1970 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 634 BP; 241 A; 73 C; 69 G; 249 T; 2 other;
     cagtgttggg aattatctag ataagatttt ttgaaataaa ttatctttta aagtatctag        60
     ataattatgt tacgatttat ctaatgttta gcttagataa aaaatgggct tatctagata       120
     aatattatag tgcccctaca aaattataaa accaatgtta ctaaaattct aatataatat       180
     aaattattta taaaattaga agaatatatt tcttgttatt attgccaacg acggtattac       240
     gataataaga gaacctgcat gcgggcttgc actatacatc gttctctact agccataatg       300
     agcatattaa aattaattag gtataggttt atttcccnat ccattttaaa aataaattaa       360
     aattaacttc gtagaactgt atttcaaagg ctcaatccgt tgttattata aatattatgt       420
     cattatattg atataaatct aatattacaa aaatactaaa aaacaataaa aataagtgta       480
     aaaaaatgat atttatctag ataaatntat tgttgtattt atctttatct agataaatta       540
     cgtttatgtt atctttatct ttatctagat aatattttgt taaaattatc ttatcttatc       600
     tagataattt tttagttatc tattcccaac actg                                   634
//
ID   DNA8-42_AP  repbase;    DNA;    INV; 692 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-42_AP.
XX
NM   DNA8-42_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-692
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1972-1972 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 692 BP; 209 A; 117 C; 125 G; 241 T; 0 other;
     cagggccgga ctgggcaggc gggataccgg gagtttcccg gtgggccgct tgtactcgta        60
     gggacgtttt ttttttaggt ttatcggtta aggctcatcc tgtcgacaga catagacgca       120
     ttttctaatg cgattgtatt agaaaactat ttagagttaa ggaaattcct caaaatagat       180
     atgaaaaaat gtataaattg tcaaaaatag atgcttgtgt gttgtgtcat attattatta       240
     tttaatgtct tcgttaatcg gtaatcccta ccttatatcg taacgcacgt ctgcaccgcc       300
     taaaatgtgc gacaattatc atcacacaaa ctcccaccta ttccggtgcc gccgtagtgg       360
     ctgaactaag gtataataat gtgctcggtg gacacaattt cgcaaaagag cctcaaacct       420
     taacaaattg cttaatatgt attaatgtgt attctggact ctagagtcta aacatatgta       480
     ttttaaataa aaatgataac atttctttgt actaaccaat ttttaaattt ttaaaatttt       540
     taataataat attaagtgtt caaattctca aaataatata caatcatttt atatgaaaat       600
     atatgttttt tagggttgtt tttataggta tacctaagtg ggccgatttt ttttattttc       660
     ccggtagaaa tttttgaccc agtccggccc tg                                     692
//
ID   DNA8-43_AP  repbase;    DNA;    INV; 869 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-43_AP.
XX
NM   DNA8-43_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-869
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1973-1973 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 869 BP; 298 A; 100 C; 90 G; 381 T; 0 other;
     tagggctggg atttgtatgt aaatacatat ttttagtaaa acatgataaa ttaattattg        60
     caaatgataa attcgtttca cgtgatttgc aataaaataa gacatatttt attttacata       120
     tttttacata cttcgtaaaa ttttcgcttt tttttacata tttcgtaaat tttgacaatt       180
     tcggtggctt agtaatattt tacatttata tttcgataat ggtactcggc aaattgtaag       240
     tgtataatgt atataggaaa taagtaggtt aaaataaata ttaataactt gattttagtt       300
     tatcttatct gtttctgttc gataaccata ccttaatgat cttagattat actttatgtt       360
     caacaattat ttgacaaaat atacttacga atttacaaca gtacctatca gactatcagt       420
     tcttgtgttc attcatttga ttcaaaatgg tcctatttgg gtttctattg atgaatctac       480
     tgactaagtc agtgttaaga ccaaatcgcc gtacatttaa ttttgaaaat ttaaaacaat       540
     atatggtttg tcattgtttc actttaaatt gattaaacat caattgtatt tcaatttaac       600
     aacatatttt tttttactat tgcatatttt ttaatttttt accacaaaat attatatttt       660
     ttaaattaaa ttaattagac ataaaaaaca ataaattgta cctgttattc aaaaattatt       720
     tagaattgta ttttaattta aaactttaac atatttttta aatttttctt agtacatatt       780
     ttttatttta tactacatat tttggcaatt ttaattacat atatatgtac atatttttgg       840
     ttttttatta catataaatc ccagcccta                                         869
//
ID   DNA8-44_AP  repbase;    DNA;    INV; 675 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-44_AP.
XX
NM   DNA8-44_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-675
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1974-1974 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 675 BP; 254 A; 80 C; 63 G; 278 T; 0 other;
     cagtgttagg cattatctag atacattttt cgtatatttt atctcatcta gataactttt        60
     aaatgattta tctattatct tatctagata ataaaaacgg tctttttttt aaattatcta       120
     gataattatt tactctatag tctatttttt tttttataca atatttattc acacaatttc       180
     actgcattgt aataatatga cccgtggatc tacaaaaagt taatatagag aaaatataac       240
     acaatataga gaaaaaaaat atttgttatc aacaatattc tttccgataa aaattaaaaa       300
     ccaaaaacta ttattatggc atacaattac taatgacaaa attctaagga aaaaagtttt       360
     ttactaaaat actatatctc tattcaatca taatgtgggc ttgaaagggt taaatgtttt       420
     tttttatgta accaaatgta ccatagtacc aatctgttga ctgtttatgt aacataaaat       480
     aaatgaaata tcaatgtaaa tttattatat ttttttttat aatcagctat cagctaaagt       540
     ttttttttat aaattatcta agtattatct agataatttt atttgaatta atctattatc       600
     tcatctagat gattatattg aaaaatatct attatcttat ctagataatt atttgattat       660
     ctatgcctaa cactg                                                        675
//
ID   DNA8-45_AP  repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-45_AP.
XX
NM   DNA8-45_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-581
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1975-1975 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 581 BP; 200 A; 56 C; 58 G; 266 T; 1 other;
     tagggctcgg atttatatgt aaatacatat tttctctgcg acatgataaa ctaatttcgg        60
     caagtgataa atttgtttca caatattttt gataaaacga gctatatttg attttacata       120
     tttttacata ttttgtcata aatacatgtt tttacatatt tcacaattat tcaatttttt       180
     ctcacatatt tatacaatta tactgtttta atgtcttttc ttcagantta gaataattga       240
     aaggttatca tgactatata ttatatcgac gatcttttga attcgaaaat ttaaaagtgc       300
     aggttattat taattgtaat caagataatt agataactat agataaatat gcatttttta       360
     ttacatttta ttttattatt aattattatt aagattttac gacaatatcg gcgatctttt       420
     ggattcgaaa atttaaaaat gaatgttaat taatgtttgt aatcaatata attagataaa       480
     tatacatttt ttattacatt ttattatatt attaattatt attttttttt tcgataatac       540
     atattttgaa ttctttagca catatttatg tacatatttt t                           581
//
ID   DNA8-46_AP  repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-46_AP.
XX
NM   DNA8-46_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-389
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1976-1976 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 389 BP; 170 A; 39 C; 35 G; 144 T; 1 other;
     tagtgtttga agtatgaaat atttcacaaa aacgtgaaac attgaaattt ttttaacaca        60
     aataaaaaca cgatttattt atttttttaa cacaatgttc agtgttttaa attctaatgt       120
     ataaatacag taggtatata atatacaata tacatgtata atattgtata cctacttgta       180
     tcatttaaac atcaaaatat ttaaaaatnt tgaataccat tttaaatgta taattccaaa       240
     ggttaggtat acatacaggt accatacagt tatgaaggta atttatgaca attatatgta       300
     aatataaaac ttatttaaaa ataaaacaaa atttattaaa atactgaaat atttcaaaat       360
     tttaaatttc atgaaatttt caaacacta                                         389
//
ID   DNA8-47_AP  repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   22-APR-2016 (Rel. 21.04, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-47_AP.
XX
NM   DNA8-47_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-307
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1977-1977 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Terminal 14-bp matches that of hAT-32_DR.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 307 BP; 103 A; 35 C; 59 G; 110 T; 0 other;
     cagtgtttct caacctgggg gtcgcgaccc ccccgggggt cgccaactta ttatttaggg        60
     tcgcgtatga attaaaattg tatgtattat atgtatttgt aaatatttgg tatacgtttt       120
     tttaattaaa aataattata atattatatg tattttatgt tgtgtacaat gtacagtaat       180
     tttagtattg attattaata ataatctata ttctatgcga gtatttaaaa aaaatatatg       240
     tagggggtcg ctaaaaaatt gaaattcaaa aagggggtcg ccacagtaaa aaggttgaga       300
     aacactg                                                                 307
//
ID   DNA8-48_AP  repbase;    DNA;    INV; 817 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-48_AP.
XX
NM   DNA8-48_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-817
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1978-1978 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 817 BP; 293 A; 113 C; 118 G; 291 T; 2 other;
     gtgttggcca acgatatcga taattcgata cgatatcgat atcgtgggta ttttcttaat        60
     aatttcgata tcgatatcta aaaataatta tcgaaaatat cgcgatatcg gtgtgattaa       120
     tcggggctcg gaattttgcg gttttacgga tgattaaaca ctaaactgag taaacagtat       180
     aaaataaaat aatattttat cttattttat tatattttat ctttatattt tattatatct       240
     gtaaaagtaa atactaaacg tagattatga tacgaggcga tattacgtnt tcttacgatc       300
     aagatccttt aaattggtgg aaagaaaacg aatctaaata ctcagctgta tcattactag       360
     ccaaaaaata cttaagtata gtggccacta gtgttccctg tgaacggtta tttagcgaag       420
     ctggaacaat catttccaag aaaagaaata gattatctcc tgagcgactc aatcaactgt       480
     tatttttgaa ttcatatttc aaatcgaacc caagttctga aacattgatg gaaaaactgc       540
     tcgaagaaga aattttttga ttaaatacat tggatacttt tcagtttgta caaaataatn       600
     tataattgtt aattaattta cactcataat atattaaaac aatatgtatt ctatactttt       660
     aatatacttt caatacactc ataatataat atgtattcta tacttttaat gttttaatat       720
     gcttcgatat cgatatcggt attttttcga tatcgcaata cgatatcggg gaaaaaaata       780
     cgatatcgat attgaaaatt atatcgttgg ccaacac                                817
//
ID   DNA8-49_AP  repbase;    DNA;    INV; 864 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-49_AP.
XX
NM   DNA8-49_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-864
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1979-1979 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 864 BP; 249 A; 127 C; 143 G; 345 T; 0 other;
     cagggctcgt aagttcatgc atctgcatgt tttttttgct acacaggaaa acatgctaac        60
     tgagatacaa atccgtttca taacaatagt aataataata tgaagtttga tagtgcatgt       120
     ttttgcatgt tttgggtgta aaggcatatt tggcatatag tcgatttttt acagtcgtta       180
     gtgcatatta tttcataaaa atatttttta gacaaatatt tgaaaagttt cttgtttctt       240
     atttactttc ccgtttacaa aattatagtg ttttgattta tttttattca gtgagcgtgt       300
     gactacctag tgtcctagta cctacatact tatttagatt ttatgcgttt tacgaaatat       360
     cgcggaaaca atgtaatcgc taccactacc atcctccacc gtataaagtg gcagcttctc       420
     accaaccagc atttataatt ttgtacattg gtacagtata gttttcttac actcgccgat       480
     gagtttactc gtatgagtcg tatgcgtttg tccgttcaat ttcctgtttt agtgttttca       540
     tgtgaggtat aggtactgta cacattattc atattttatt taaacaatgc cgaaagaaaa       600
     acaaacagtt gcgggccgtt tgcaaaattt tgtggaggaa tttgaatttt tttaaattta       660
     tggattaatt cttattattt taaaattttc tcatgatttt tttacataat gcatattttg       720
     agcgcataat ttaaaaatgt tagggcatat aaatgcatat tttcgaactt tttagtgcat       780
     attttaatgc atattttgac aatttttagt gcatgaatgc atgcttattt atgcattttt       840
     tagtgcatga agtaacgagc cctg                                              864
//
ID   DNA8-4B_AP  repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4B_AP.
XX
NM   DNA8-4B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-264
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1961-1961 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 264 BP; 82 A; 44 C; 44 G; 94 T; 0 other;
     cacagatata tattataata actagatacc cgactccata tacaacaaca ttattgaatt        60
     atgatgccca acgccatttg tcactttggc aatgtttaca aattctaatc gttttgattg       120
     gcaacgggct tgtttgatat gaaatgttgt tgtttattat catattacct ttctaacgat       180
     tagtaaacat tgcccaagtt gtaaatggct gccagcgtca ttgataagaa gaagtcgggt       240
     atctagttat tatatatatc tgtg                                              264
//
ID   DNA8-4B_LMi repbase;    DNA;    INV; 1432 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1432
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2896-2896 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1432 BP; 224 A; 446 C; 318 G; 444 T; 0 other;
     tagacttgcg cataatagtt cgcgatcggg agcgctcact ttagttcgcg gctctgccgc        60
     gaactagttc gctcttttag ttcgtccgct cccagtgacg gctgagcggc gtggtctgcg       120
     cgtgcaggtg gagggggaag ttcccccacc tagctgcttc atgcgcttgc tgcttgagcc       180
     gctaacgata tcacgcaaac caaaagaaac agtttgtgga taatttctcg cgtttaagtt       240
     tagagttatc tctatatctt ggcattatgg aatttattag tcagatattg cagatcgccc       300
     gctcctccta gttcgcccgc tcctcctagt tcgcccgctc ctcctagttc gcccgctgct       360
     cctagttcgt ccgctgctcc tagttcgtcc gctgctccta gttcgtccgc tgctcctagt       420
     tcgtccgctg ctcctagttc gtccgctgct cctagttcgt ccgctgctcc tagttcgtcc       480
     gctgctccta gttcgtccgc tgctcctagt tcgtccgctg ctcctagttc gtccgctgct       540
     cctagttcgt ccgctgctcc tagttcgtcc gctgctccta gttcgtccgc tgctcctagt       600
     tcgtccgctg ctcctagttc gtccgctgct cctagttcgt ccgctctcct agttcgtccg       660
     ctctcctagt tcgtccgctc tcctagttcg ccgctctcct agttcgccgc tctcctagtt       720
     cgccgctctc ctagttcgtc cgctctccta gttcgccgct ctcctagttc gccgctctcc       780
     tagttcgccg ctctcctagt tcgccgctct cctagttcgc cgctctccta gttcgccgcc       840
     tagttcgccc tagttcgccg ctctagttcg cctagttcgc cgctctccta gttcgccgct       900
     ctcctagttc gccgcttagt tcgcgttcgc cgctctccta gttcgtccgc tccttctagt       960
     tcgtccgctc tttttggctt ttgctaccgc tactaaaaga gctctttttt tttatgacag      1020
     cttttttata taatgaatca gtgttgccaa agcgtgtgct attacccgta tttttgggca      1080
     atttgacatc aaatacttag gcaaataaac cagttattta cacgaatggg tgatacaatg      1140
     gtattcaact actttgcata cagagtactc gtagtacttt atttttaaaa tagatttctt      1200
     gtggcagtga actatgaaac tacagctgag ctgcatctca gctcgaaatg aaggtaactg      1260
     gcagaaggga atcacgcgat tctgcgcgct ctcgcgtcct ctcgctgttc cccgtcagtc      1320
     ttcggaaaag gagcggacga actaagaggc gagggatctg cgaactagtt cgcgtagttc      1380
     gcctgtggga gcgctcttcc gaactagttc gttcgcgaac tacacaagac ta              1432
//
ID   DNA8-4_AP   repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4_AP.
XX
NM   DNA8-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-224
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1746-1746 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 224 BP; 75 A; 40 C; 31 G; 78 T; 0 other;
     cacagatatg tataataact agatacccga ctccatatac aacaacatta ttaaattatg        60
     atgcccgacg ccatttgcaa ctttggcaat gtttacattt attcatatac atatttactt       120
     atatatacat atatactgat aatactattt tgccctagtt gtaaatggct gccagcgtca       180
     ttgataagaa gaagtcgggt atctagttat tatacatatc tgtg                        224
//
ID   DNA8-4_BTa  repbase;    DNA;    INV; 601 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-601
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 879-879 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 601 BP; 174 A; 119 C; 121 G; 187 T; 0 other;
     caaagacata aagacggagc gctcgtatct aaaagcacgg ggaaaaagtg aagctaggtt        60
     cggcgctgcg cgcttgtgtg agtgtgtaaa tgagcgcggg aatccatggc ggcaaacgga       120
     aatttgattt gaacttgtcc tcttgatttt tgcacatttc ttctttgaaa cgtattttaa       180
     attcctaaaa cgaatatact aagaaagttc ggtctgcgtc ctaatataat acacctactt       240
     ttgctcggta acaggcagta atctcagata aagttagttt ttcttctgct catggtggtt       300
     ctgcaggttc aaacaggccg ttacagttct agatcaacgt tactcccaaa tgaaattaat       360
     cggtcgacga cggactgaaa ctaacctaaa gttaaaaaaa tatgagtgtg tacctgaatt       420
     tgggcaaaaa tcaacctaaa atactttgtt tccgcaattt tatttattag ttcccgccct       480
     acatttgaat tcaaacttgt cccgatttcg ccgccaatcc tctagccaat agtagaggtg       540
     attgaaaaga agctctagaa gcttcatttt ttgcttttag tgctccgtct ttatgtcttt       600
     g                                                                       601
//
ID   DNA8-4_CQ   repbase;    DNA;    INV; 4916 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4916
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 81-81 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
CC   8bp TSDs.
XX
SQ   Sequence 4916 BP; 1769 A; 768 C; 776 G; 1599 T; 4 other;
     caggggtgtg tttgatgggc ttgagctagg tagatgcgca tttggctgag ggcgcctaca        60
     gtgcatatat gatttttagg gcgctgacag tcactaactg atatgtgagg cgcttatagt       120
     ggaaacgtat ttttaaactt aaaaataaaa caaaatccta aagtacctaa acatacacat       180
     ggttcttgat ggttaataaa caaagcgtag attaaattaa aaattaaaaa aaaawtatgg       240
     taaatttacc tattttaaca aagtagtaca tatataactt aagtttaatt tttgggatta       300
     aagattacta tttttgcata aattttattt ttggtacgat ttctgctgat attttttttc       360
     tgtgattttg aatcaatatt attagaaatt aaaaaaagtc ttgtcgcaaa aagaacgata       420
     cacgcctgtg aatccgttgc cgaaaccgca aggtttaaga gggctagatt ataaggtgtt       480
     acgtcgattc aacattatca gaaataaaag ttattttatg tttttgattt tttttttttt       540
     cattcaaaaa tgtaagcacc ttcccgcaaa tttattttag gaaaacataa taaaaagaat       600
     ttcaaaaatt ctttaacggt tagtaaggta attcgcttgg ctaaacactt gcttgaaagt       660
     gtcaaagatt tcaagaacct ataggtttga aaacattatt tagtaaactt caaatataag       720
     atcaaaacag acaaacagtg acttttgccc ttaacataca caaacttcac attatttttg       780
     aaaattcata aaattgactc taaacctagt cgtaaaccct ttctttgtcc cgtcctactc       840
     gataatgaaa atgcccatcc cccaacaaat aaaaatgttt tgtctgcagc gtggaaaaac       900
     gcaacccatt gcaatgaaac aatagaatct tttagttatt taaaattttt aaggtcgcac       960
     ctatcataaa agataactct atctacacat aattaaattt gatccatttt ggaattgata      1020
     ataaaaactg actctcacgt attcaatcsa gaagtcagaa ttatatatta acagggtatc      1080
     cagatccacg gtaagtttcg gagaacaaat ctaagataaa agtgaatatt ttttatcgat      1140
     tttaatgtat atttctatgg aaaaatcaca tgaaattgat agaaacacgt acattcatat      1200
     ttatcaaatt tgtcatgaac atgcctggaa tgacttgaac gggaccatcc ataaaccacg      1260
     tggtcacttt aggagggtat ggtgattgtc cacgatccat acaaaaaagt tttttttgta      1320
     tggacaattg tccacaaggg gaggggggag ggtggtggag gtaacagatt cccaaaaaag      1380
     tgtccacgtg gtttatggat ggtcccaact tgaaaataac atataaaaaa tccttattca      1440
     gctatccgaa aaacacaatt acttaataag gaaaggaggc agaattctta aaataaagga      1500
     atttcgtact ttttttttat ttcagtgtat ggcttttgaa ctttaacttt gcaatcaaat      1560
     cggagaaaaa agattgacta gctctcaata gaataatctg atgcgattta gtattacata      1620
     aagcgtccaa tttcccaggg ttacaaaatt cccgggaaac ggtaaatttt aaatttatcc      1680
     aaaattgttc ttatattggt tctggttaat attctttaac aaaattgtat aaaatagcaa      1740
     cataaatgat caaattaagt gcgagggtca attaatgtct taacttcttg caaaaacatt      1800
     ttcaagaaaa tatattgata ttctaaatct aaagactatt tctaaattta ctagtatttt      1860
     tttttttttg cagtgatatt tttccaatca cagtcttttg acggcgagta aaatgaatcc      1920
     atgcttcaaa accataacat tgctatacat tatggttctg tgaacagttt gagagaatat      1980
     gataaagaat aatattgagc cgacgttgaa atgaaaataa aaaataatga agaaaatatg      2040
     gatttgttgg caaatctttt ttcttgaaca aatcttactt ctttgagctc ataaataaat      2100
     agataagcat tggattcacc ttaaatatca gctttttcac ttgaaatatc attttcataa      2160
     aatcaccttc tacataatac ggagtagttt tttttaatga ttcagcttaa taaatgattt      2220
     cgtctaaaag aattttcata gcaataaaag aagttcagtt catattaaat ctcttacgcc      2280
     cttgttagct cgagtttttt tttcttgata ttaaactgtt aacacttttt aacaaatttc      2340
     ccaatttttt tttatttgga atgaccctct ctgagacatc gattgatatt tttttcaatt      2400
     ttcatccaat ttggccgtgg taaacaaaac cgtaaaaaaa cataatttga tcttggcaga      2460
     acaggatacc taagtttcaa aggatataac aacaattttt gtttaaaaag ctaaccagaa      2520
     ttataatagt taattttcat ttcataatat cgtaattttt gttgctcaac gaataaacaa      2580
     gatcccagtt gtgaaagctt cagaaactaa tattttttga aatatttata ctttgatatg      2640
     aaattttcag gcgaactgaa tggttataag aacaataaat cgaaatgaat aaaataaaat      2700
     taagtttttc attactattt ttttgaaaat ttaaaaaatg tgccaaaaag ttaagaaaat      2760
     tatgaaacta tattatgtgc aattatcgtt actattaacg gcattgcttt attgagacaa      2820
     aaaattgata tcaaaatttt atttaatttc tttaaaaaaa taaatatgag cattcaaaat      2880
     gtctcagtta acgcttccta ttgtgtaact aagcgaaatt cgcatatctc agctagtaac      2940
     gaacaaatac tgatatttta ttatgagaac ttgttccgaa aattgttctt agagatctaa      3000
     ttgataaagt ctagattata caaagtggaa tcaaattaga taatttagaa gaatatgtgc      3060
     aatttgcata gattatgtat atgtattagg atgtaacaaa aattacattt tggcggacat      3120
     tcagaggttt gttccggtgg tcatactgag ctcaaattcc aaatatgagc ttgattggat      3180
     gtaacaggag ctggtgcttt gcatttgaat tttaaatggg atttaacccg taaaaagatt      3240
     ttttttttca aaaatgtaat tttttaaggc acttggccac tgaagcgctt attttcaaca      3300
     tcactggcgt gtaggcccga ttcttgcaca tcttttggta tatataacat tgatttttgg      3360
     ggcaccccgg agctcggtac agaccttaaa agtttggcat tttttcgaaa aatcgatccc      3420
     agtataatca aatagtatct cggacgccgc gagatgcgac gtatatcttt tttacgattc      3480
     agtagccaaa gtgcttaama aatataataa gtatattgtt tcaatcaatt ttcagtgact      3540
     ttccaaagaa aaatcttata agatcgttat aaaattctga gattcttaga agaagttgca      3600
     cttggcgcta aatattatat ttcaatttaa ccctcaaaat ttcgggaaat agactttctt      3660
     acaaggtgca aaatatcaga cctaccttat ttatctagga gaactctaaa taatcacacc      3720
     gtgtacattg tacactgtat gacttaataa aaatcaaact atgtttcatt tcccatatca      3780
     gttctcgatc tataaagtaa acgaaatcat ttagtaaagt cctctactag aataaagttg      3840
     ccacatagag cgatttattt tgagtcccta tcacttcaaa aaaactttaa ccagaagcga      3900
     agatctcttt catcaaaaaa taaaacagca ataaaaaaat taatattaat ggtactgatt      3960
     tcaaaagtat tctttttttc aaagcttmgg ggtaaatgtt ccgaaaaact ctacccgtca      4020
     aaaatcatcc tctgttagag gattcaaaga gtaagtcagc ctacacaagt catctgttgg      4080
     aaacatgttg acaaagcgat gcataaagtt tgcatgccct gtgaggctgt tgctgcgaag      4140
     tggttgttca agaatgctac accgttaaat actgtaagca cagaattaaa ggatgaatag      4200
     cacgtattta caatatgaaa gatgataatg ttctcataaa cattgatgat cgtgccaaaa      4260
     aaataaaacg cattacgcaa atgaatgacg aattagattt tgcgcacttc caaacaaata      4320
     aaaaataaat caatgcgatt gtgcttttta aaacgagctc caacattttt accaattcgg      4380
     agtatcgaat cacctgaagg gtaggcttac tccttcaatc tgagaaagtc atttgaaatc      4440
     attggtctaa atttgataca ttttggtgag cgagtcggct tctctcgctc ttggggaaac      4500
     atatagttgc gtgcgcacaa caaccaaaaa tcatttagtc aaataaaaaa aaaacaacca      4560
     aaccacaaaa agaaacttat gcatcgcaag agtgacaaag ctaaatttaa ataaaacaaa      4620
     caacaaacca tcgcgcagcg atcgcgcatc gacttagcga ctttgcgact gactgcgaca      4680
     gcactacctt ggaacattga aatgtttggt tgactttcca gaaagagtgc atatgacttg      4740
     aaaaaaagaa aagggcgctt caaaattgag ccaagaaatt ggtgaaactt ggtgcaagcc      4800
     cttttatggt caaaaatatc gtttaacttg aatatttttc cttaaaaaat aattaaattt      4860
     aagcaaacag ctaagtagat gtcatctact caaatctacc cataagcaca cccctg          4916
//
ID   DNA8-4_LMi  repbase;    DNA;    INV; 1153 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1153
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2976-2976 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1153 BP; 287 A; 267 C; 269 G; 330 T; 0 other;
     tagacttgcg cataatagtt cgcgatcggg agcgctcact ttagttcgcg gctctgccgc        60
     gaactagttc gttcttttag ttcgtccgct cccagtgacg gctgagcggc gtggtctgcg       120
     catgcaggtg gagggagaag ttcccccacc tagctgcttc atgcgcttgc tgcgtgagcc       180
     gctaacgata tcacgcaaac caaaagaaac agtttgtgga taatttctcg cgtttaagtt       240
     tagagttatc tctatatctt ggcattatgg aatttattag tcagatattg cagagtgcag       300
     aatacttcaa aacagaaatt ttgtagcact gaactatgta atctagcagg cagacgctca       360
     cctcgaaatg gctctcatca gcagaaggca aacacgtgat ttttaattct gctgcgcgcc       420
     ctctcgctat tgcccgtcgg tcttcggaaa agaatccaac gaactaagaa gcgagatacg       480
     tttggcataa tagttcgcga ccggtaacgc atgttttagt tcgcgaccga ttgcacatat       540
     tttagttcgc gaccgatcgc gcatatttta gttcgcgacc gatcgcgcat attttagttc       600
     gcgaccggta gctctccttt tagttcgcag ctcggccgcg aagtaggtcg ctctttttag       660
     ttcgtccgct ctttttggct tttgctaccg ctactaaaag agctctttct tttgttatga       720
     cagctttttt atataatgat cagtgttgcc caagcgtgtg ctattacccg tatttttggg       780
     caattagaca tcaaatactt aagcaaataa accagttatt tacacgaatg ggtgatacaa       840
     tggtattcaa ctactttgca tacagagtac tcgtagtaaa tattatttag acactgctga       900
     ataccttaga aaagaaaatt tgtggcagtg aactatgaaa ctacagctga gctgcatctc       960
     agctcgaaat gacggtaact ggcagaaggg aatcacgcga ttctgcgcgc tctcgcgtcc      1020
     tctcgctgtt ccccgtcagt cttcggaaaa ggagcggacg aactaagagg cgagggatct      1080
     gcgaactagt tcgcgtagtt cgcctgtggg agcgctcttc cgaactagtt cgttcgcgaa      1140
     ctacacaaga cta                                                         1153
//
ID   DNA8-4_PBa  repbase;    DNA;    INV; 1406 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   15-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1406
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 604-604 (2014).
XX
DR   [2] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 1406 BP; 471 A; 226 C; 227 G; 482 T; 0 other;
     cagcgctcgg aattagttga acatttcggt ccgatttcga aggcgacgcc tacagttccc        60
     ccaccaccgc tcgagtctca gcggccgagc cgccgaacgg ctgtgcctca ggagcgtcgc       120
     cctgtgagaa acatgctcgt acgcctttcg cctcaaactg tcacttagat atcttctttg       180
     ctaaattatt tttattttta taaataaaca aaacgttgaa ttttctatta ttaatatatt       240
     atattgtgct ttatttatgg gtgttctttt ttcaaacgta atatgtcaaa tatctcaaaa       300
     aatataaaag atatggaaaa acatttcaga taaaagtttt atagcttcga ggaggaaaga       360
     tgataacatt atcaatttca ttgtaaatag cgccactttc gagatttttt tatgattgcc       420
     attcttttaa atggaatcat atactttttg ttatgcaata tgattcctct agttattctg       480
     gatataaaaa tatataatat taaggcacaa atcaaaaagt tactaattta cgagatattt       540
     tgctttttta cttatttttc cgtcgtattt tgacataaaa cataaaataa attaatcatt       600
     ttttggtaaa tgtatcttaa tacttgtgca cagaacaatg agataagtta attggtataa       660
     agaaaacaca tagttgcttt ccaaaaaagt tatgcatttt gcagtttgca actacgcatg       720
     tttttttgaa aagcactggt gttttcttta caccaattga ttcatctcat tattctgtgc       780
     agaaaaatat taagatacgt ttaccaaaaa atgattaatt tattttatgt tttatgtcaa       840
     aatacgacgg aaaaagcaaa atatctcgta aattagtaac tttttgattt gtgccttaat       900
     attatatata taatattttt atatccagaa taactagagg aatcatattg cataacaaaa       960
     agtatatgat tccatttaaa agaatggcaa tcataaaaaa tctcgaaagt ggcgctattt      1020
     acaatgaaat tgataatgtt atcatctttc ctcctcgaag ctataaaact tttatctgaa      1080
     atgtttttcc atatctttta tattttttga gatatttgac ctattacgtt tgaaaaaaaa      1140
     cacccataaa taaagcacaa tataatatat taataataga aaattcaacg ttttatttat      1200
     ttataaaaat aaaaataatt tagcaaagaa gatatctaag tgacagtttg gggcgaaagg      1260
     cgtacggata gcatgtttct catagggcga cgctcctgag gcacagccgt tcggcggctc      1320
     ggccgctgag actcgagcgg tggtggggga actgtaggcg tcgccttcga aatcggaccg      1380
     aaatgttcaa ctaattccga gcgctg                                           1406
//
ID   DNA8-50_AP  repbase;    DNA;    INV; 552 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-50_AP.
XX
NM   DNA8-50_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-552
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1980-1980 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 552 BP; 198 A; 51 C; 64 G; 239 T; 0 other;
     tagggcagtg aagttgttgc atttgcatat tttttgtaaa tgcttatatt tattgctgag        60
     tgagcttaaa atatgtttcg ttaaactctt aatttaaaca aaaaaaaatt atattgcaat       120
     aaatgcaatt ttggcgattt ttttaatttt actgcaattt taactatttt tcataatttt       180
     cgtttacatt taagattata taacttaata tataaaataa aagtaagtaa acgtagcaat       240
     gaacaaattt ctatatttgt tgtaagtaat acttattatt ttattaatat ttctatagag       300
     cgattatcgc attaaggtcg ctaagaaaac ttaaaaaaat catttgttat gcaatgcaat       360
     aatgtaagca atattcatat ttaattttta ttattattta ttaatatgtt tgattttatt       420
     gattataatt aaattttttc gatgcaattt ttaatatatt ttaatgcaat aagtgcaatt       480
     aatttagtgt attttaatgc aataatgcaa tcaatttagt gagtttttta atgcaataac       540
     ttcactgccc ta                                                           552
//
ID   DNA8-51_AP  repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-51_AP.
XX
NM   DNA8-51_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-507
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1981-1981 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 507 BP; 171 A; 66 C; 79 G; 191 T; 0 other;
     cagtggtctt caaccggtgg gtcgcgaccc atttttgggt cgcgatacgt cttcttttta        60
     aaataaaaaa taagtttaaa ttacttagat gaaataaata aaaatacagt ctatataatc       120
     tatattctat aatataatat tatagtaata tagtggatat caaatcacag tatatttttc       180
     atatactggt atgattctac gtagcaggtg gaatttatta tgtgaaaaca ctcaaggaca       240
     aacatcacat taaatttttt gtgtcgtatt tttattttat tatatttttt cgtgtgaatt       300
     ctatacattt tcaattaata ataattaaat attctgcctg gtactaaaat gtaattttta       360
     tttattcagt tataataggt agtactacta tacaaagcat taagcaattt tagctttttt       420
     tttgtttttc tacaaagctt acgtgggtcg cgaaaaatgt gggcctaaaa aagtgggtcg       480
     cgagtccaaa aaggttgaag accactg                                           507
//
ID   DNA8-52B_AP repbase;    DNA;    INV; 1102 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-52B_AP.
XX
NM   DNA8-52B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1102
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1982-1982 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1102 BP; 428 A; 154 C; 146 G; 372 T; 2 other;
     tagggctcgg attttaaagc ataataaata acaaaaaaag cacaaaattg ttttaaaaaa        60
     gcaaaaatga agcatattta ttttttaaaa aagcaaaaaa aaagcatgac taaaaattaa       120
     catgaattag ttataatttt ataaaactga ataaaaaaaa ttaatttaaa ttaaaaaaag       180
     aatttactac catgtatttg gcaagatttt cagaagtgaa actgactcta ttgtctgaca       240
     ggatgttttt atacatagaa aacgaacgct ctacatccac cgaagtgatc ggtgcatact       300
     tcatgcaaga ggtttcgttt aaatcaaacc catgataatt aatttcgtct gatgaaacgc       360
     cacacagtat agtattaatg tccagtaatt gtttccagcc tttgtttttc gaaagaacac       420
     gatttagctt accxgaaata gcagttgcaa tatctccatt agcttcattt aacttttttt       480
     ctgcatctaa gacaatattt atacatgttg tcaacgattc gcctaaaatt atacatataa       540
     tttagtatta tgatgttaaa ttgtttaaat actttgttaa aagttacctt ttccctctaa       600
     tgttgtaata gtaataatat ctggtagaaa tccaaagttg gttgaaatat acacaatatt       660
     tgattgaaga gatacatttt gaaatagttg tttcactact ttaacacatt gagattcttc       720
     ttcgaagtct tcaattacac tttttaattc attaaaatat ttgcaataat actggacagc       780
     tttagatctg ttgatcgata atctatacat ttaaggacgt ttcgcactaa tggtacggca       840
     cggtcattat tgcgggtttt cacatttctt attaattaaa taaacatttt tgttttattt       900
     ttatagcata acagacatat aaaaattcca cagctagaat aactgaaaaa agcaataaaa       960
     aagcaaaaaa agcatacaaa aaaaagcaaa aataaattcg tttatttgga atcagaatga      1020
     cgtgaaacga atttatgtat aaaaattaga tttctatctt axatatataa aaagaagcat      1080
     ttgctttaaa atccgagccc ta                                               1102
//
ID   DNA8-52_AP  repbase;    DNA;    INV; 827 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-52_AP.
XX
NM   DNA8-52_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-827
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1983-1983 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 827 BP; 332 A; 118 C; 95 G; 282 T; 0 other;
     gggctcggat tttgtagcaa aataaatcct taaaaaagca ttttaagtag ccaaaaaaag        60
     catttattaa tttaattcta aaaaagcaaa tttcaattac acataaaatt aaatattaaa       120
     aaaggaattt acaaccatat atttagtcaa gttactttca ttaaaactca tattaaacat       180
     ataaaacgtt atatttttta tccgaattta ttttgacttc acacaattta caaaatataa       240
     tatttccgtc agtcataagc acattttcac cgaattctct tacgattttt tttaatttta       300
     aatttaaatt tttaactttt ggcattttga cgatgagaga aattatttag aacactatac       360
     gtttatacct cactgattgt cgattgatat ttaccggcca actaaagtat tagaacgtgc       420
     tataaaaata cgtaggtata attcagataa ttttcccttt ccttgagtcg taaatacaac       480
     tatagataat tgtaaataaa actatttcgg cacaataacg acagttattt tatcagtcat       540
     atatttatta ctggtttttt cactggtttt ataatttctg gtaataataa tatagtccaa       600
     gacgtataat atacatagag ataagctaag ttttcaagaa aaatatgtaa aaatcaagaa       660
     aaaataacca aataggggga aaagcaataa aaagcagatt ttgtggaaaa aagcaaaaaa       720
     aagtttactt cattcaaatc agaacgattc aaaacgtatt tatatataag aattatcttt       780
     ctatcacaat tccctcaaaa gaagcatttg ctacaaaatc cgagccc                     827
//
ID   DNA8-53B_AP repbase;    DNA;    INV; 410 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-53B_AP.
XX
NM   DNA8-53B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-410
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1984-1984 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 410 BP; 155 A; 62 C; 51 G; 142 T; 0 other;
     catagataat ataagaatgg ataggacata agaacttatc actagaaaat ttagtgatac        60
     gtttttaatg ttatatgggg caaatattga tatgataatt gataaatgat aataaataac       120
     attaatgatt aattagtaat aattaacgat ctatattatt ctatattcta attacaatta       180
     attatgtacg caaagtttag agtaatttga gtattccaat ttccattttc aggcacaaca       240
     atcaaaatac aaatttgaaa ttgacaaata ttgtaaacag tttttggaca taaccttaaa       300
     aaaagcccca tatcgtcttt ctctctttac gttctctctt ccccaaaaaa gcacacggcc       360
     ccatatgaaa ctggtatagg catgtcctat ccattcttat attatctatg                  410
//
ID   DNA8-53_AP  repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-53_AP.
XX
NM   DNA8-53_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-391
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1985-1985 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 391 BP; 145 A; 62 C; 46 G; 138 T; 0 other;
     catagataat ataagaatgg ataggacata agaacttatc acatgaaaat ttagtgatac        60
     tattttaagg ttatatgggg cgaatattga tgtgataatt gataaataat aatgaatatt       120
     aaataacata attttatttt gttaaaatat tattttccaa tttccatttt ccaggtacag       180
     gtggcaaaac aatcaaaata caaactgaca aatatctaaa tataactgac tatcatattt       240
     attcattatt atttaataaa acagttttgc acataacctc aaaaagcctc atatcgtctt       300
     tctctcttta ctttctctct tccccaaaaa agcacacggc ctcatatgga actggtatag       360
     gcatgtccta tccattctta tattatctat g                                      391
//
ID   DNA8-54_AP  repbase;    DNA;    INV; 588 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-54_AP.
XX
NM   DNA8-54_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-588
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1986-1986 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 588 BP; 231 A; 69 C; 71 G; 213 T; 4 other;
     cagtcttgta aagaatactt ttattttgta ttcggaatac atattcgaat aaatgagaat        60
     taaggtattc agaatacgta ttcgaatagt tcttaaaaaa tatattcaga atacatattc       120
     gaatacttta aaaagtattc gaatactatc agaatacttt ttttcacaac tagtttttgn       180
     cagtttttga atgattggta nttaacattt attaattaat aattaaacat acaacgtaat       240
     cataagttat ttatacattt tgaccacata tgatncggcc gatacgggcc atacgggata       300
     caacacattg gtgtttataa aaataatcat atcatgggcc aatattatat ttcgtttaaa       360
     gaataaaatt aatgttcatg atttataata tgtcttgtca caaatttaaa actatttttc       420
     tggatcggaa aaaagtattt ttttaatgaa taaaaaatac aaataaaagt attcagaata       480
     cgtattcgaa tacttcttaa aaaaagtatt taaaatagta ttcgaataca aaaaaagtat       540
     tcgaatactt ttattcgaat acntttattc gaatacttta caagactg                    588
//
ID   DNA8-55B_AP repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   22-APR-2016 (Rel. 21.04, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-55B_AP.
XX
NM   DNA8-55B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-186
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1987-1987 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Terminal 20-bp is similar to that of hAT-12_DR.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 186 BP; 54 A; 46 C; 37 G; 49 T; 0 other;
     caggggtttt caaccttttt gggtccacgg ctcttccgat tttgaaaaca atttaaacgg        60
     ctcccatacg aataatgata ataataaaat aaacaaattt acattatttt ctactgcgga       120
     cgcggctccc ttgataataa tcggcgacgc ccctgggagc cgcgacgcac aggttgaaaa       180
     cccctg                                                                  186
//
ID   DNA8-55_AP  repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-55_AP.
XX
NM   DNA8-55_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-327
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1988-1988 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 327 BP; 102 A; 75 C; 57 G; 93 T; 0 other;
     cagtggtttt caaccttttt gggtccacgg ctccttttga ttttgaaatc aaatatacgg        60
     ctcccatacg caaatttaaa acaaacaatt aatttacatt attcaatcca actttattca       120
     atgacgaaat ctgtcgatcg gccgatctat ctctcacata cccaagtgcg tacaacatgt       180
     atagggcgtg cggacttaca cggcagcgaa aagtagataa caaaaactat aaattattac       240
     aatttttttt tagttttcga acgcggctca tttgataata accgacgacg cccctgggag       300
     ccgcgacgca caggttgaaa accactg                                           327
//
ID   DNA8-56_AP  repbase;    DNA;    INV; 585 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-56_AP.
XX
NM   DNA8-56_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-585
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1989-1989 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 585 BP; 239 A; 72 C; 60 G; 214 T; 0 other;
     cagtcctgta aagaatactt ttaaaaagta cttgagtaaa tactcaaata catttttttt        60
     taagtattta agatactact caaatacttt aattgtaaag tatttcaaat actactcaaa       120
     tactttgaaa aagtatttgg aatacttttc aaatactttt ggtttttaaa gtgggtttct       180
     aattatcgta atataaacac ataggtagta ggtaatctaa tagttatcta atagttttaa       240
     agggaatatt gttattcaat attcaataac tttttttaga aatctggttt tcacaaacct       300
     ttgggcttcg gctaacacag aaatacagaa tattaaataa aactattatt ctattattgt       360
     agttgacaat aatatttttc caaccaatta tttcgaataa aaataaaatg ttcgaaataa       420
     aaaaccaaag tattcaatac caaaaagtat ttaatacaaa aaaaagtatt taaaatacca       480
     ttcaaaatac ttcatgctga aagtatttaa aaagttattc aatacttaaa aaagtattcg       540
     aatactttta ctcaaatact tttacttaaa tactttacag gactg                       585
//
ID   DNA8-57B_AP repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-57B_AP.
XX
NM   DNA8-57B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-215
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1990-1990 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 215 BP; 74 A; 38 C; 36 G; 67 T; 0 other;
     accatgacta aataaacagg catgtcagct cgataacact gcgcataaaa ttgtgataaa        60
     atgttcccca gacttggaat aaacgctaaa atattgtacg ctataataat aatctacatt       120
     atacatttta tattattctt tccatgtctg gggaacatgc gcgacgatag cgaaaatgaa       180
     attttagctg acatgcctgt ttatttagtc atggt                                  215
//
ID   DNA8-57_AP  repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-57_AP.
XX
NM   DNA8-57_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-220
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1991-1991 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 220 BP; 75 A; 33 C; 38 G; 74 T; 0 other;
     catgactaaa taaacaggca tgatcgctag attactgcac gcatatttta tacatatatt        60
     atacttcccc agacttggaa gaaacactaa tatcatagaa aaaaatgtta ttcacattac       120
     aattatatag gaattatact gtttttgcca tgtctgggga aaatgcgcag tgataggaaa       180
     aattggtttt ttggtgatca tgcctgttta tttagtcatg                             220
//
ID   DNA8-58_AP  repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   29-MAY-2014 (Rel. 19.06, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-58_AP.
XX
NM   DNA8-58_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-393
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1992-1992 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 393 BP; 118 A; 71 C; 85 G; 119 T; 0 other;
     cagaggtatt caaactgtgc gtcgcggctc ccaggggcgt cgcgagagtt atcgaaggga        60
     gccacgtcat ataattgaaa accaataaat attttaaaat atttttacga aaaacgtttt       120
     ttattatcat tgaggcacac cggttgggaa acgttggatt gtttacagtc tacactctac       180
     tataatcatt cgctaagtat agctttaatt gatcgcgtaa gtcgcaatag agacagcgat       240
     accatcaact gccatcgtta aatcatcaat gcgtatgtcg tgtttggcag tattagtcgc       300
     gagttaaatt atcagtcatt tttaatttgg gagccgtcaa cattttgtga agactcaaag       360
     gagccttggg atgaaaaagt ttgaatacct ctg                                    393
//
ID   DNA8-59_AP  repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-59_AP.
XX
NM   DNA8-59_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-217
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1993-1993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 217 BP; 56 A; 43 C; 55 G; 62 T; 1 other;
     catagacctt atactaatag acggaacatc caggcgggat gcgggtgggt ggtgcggttt        60
     gcgttacagt gatatatata tattatatac agtaatatac agagtattgt atcatctagt       120
     gcgcatgtgc ggtgtacgtt gtactacctt gatcagcgcc gtcacgcttg gacgccggaa       180
     ctacaaccac gtnccgtcta ttagtataag gtctatg                                217
//
ID   DNA8-5_AP   repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_AP.
XX
NM   DNA8-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-234
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1747-1747 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 234 BP; 68 A; 45 C; 49 G; 72 T; 0 other;
     cagtggcgcc gaagtccatg gtgacgtcgg gccgtggccc gacctctttt ttaaaaaatg        60
     tggccggccg gccatatttt atttacttca taactttaat atgagcatga gtatatttaa       120
     accgtgatta tgaataaatg tatattaggg tacctctata ttaaataatt aagatattga       180
     ggccgggaag ttttaaaatt gcccgaccac attttaaaaa cttcggcgcc actg             234
//
ID   DNA8-5_BTa  repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-317
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 880-880 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 317 BP; 84 A; 83 C; 73 G; 77 T; 0 other;
     catagagtac atagagtcgt aatgtaagtg ggtgagctgg cgccactttt aagcattttc        60
     caggtcccga attccgagac tcctgtgtga cgccgggtca ctttttcgat acataatcga       120
     ttgtttgcga tacacgggta cccggccatc cgatgtaaac aaagaagata ggaatcacca       180
     cgtattccac accgccattt tggatcgaac atgtatcgaa aaagtgaccc gaactcggcg       240
     cacaccgggc tcggaactcg tcgagcagaa catggcgcca gctctcccat ttacattacg       300
     actctatgta ctctatg                                                      317
//
ID   DNA8-5_CQ   repbase;    DNA;    INV; 1461 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1461
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 82-82 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. 8bp TSDs.
XX
SQ   Sequence 1461 BP; 489 A; 274 C; 266 G; 432 T; 0 other;
     cagggttgcg aatgagcgag cgctcacgga aggcttgctc gctccagctg gagcgtgagt        60
     ttttatcagg tagctcgtgc tcgctcacgc tcaccggagc gttttgcgct cacgtgagct       120
     ggtgagccaa agtaggtagt tgttttttcc tgttgaagca tctgcctgtt tgaaacgaag       180
     tttctagaac tatctcagca caggcagcaa aaacaaacaa gaaagtggtc gaacaaacaa       240
     aagtaggcaa tgaaatggat ttgatcagcg aaccgaaatt tacgttctat ttaaaatcta       300
     gacatttttc gaacaaggaa caaaaaacta aattcataat gtaaacattc attgacgtga       360
     agagatgcac tgtttgttca caaatcaaat ccatattgga ccatattgta ttgttgttat       420
     gtacaaaaat attgacaatt tatgtatatt ttatttattt ttaaataatc ttttaaacag       480
     ttacaatcat ccatgttcaa aaaatcatat ataacttgta attgaatatt ttcagaggtt       540
     tggttgcgaa agtgttgaat aaaatccact tgttggaaga agagccaacc ttttcgtggt       600
     gaaaaatatt gacaatttat ttgatttgag tcaaaagggt tatttcaacc cttaggaatt       660
     ttgaggcata tatttaaaat agaactgttt caaaaatgtt accctatttt ctaaaatgtt       720
     tgccaaataa agactaacct tatagaaatg attagccgtt tctaatcact gaatcactga       780
     aagatttaat aaacggaata acttttttta atggtagctc attctgaccc gcaatctgga       840
     aatgtagtca aaacactgat taggtacata aaaacagttt aatgttatat tttaatcaac       900
     caagcattta accttgaatc gaacttacca aagcataaat cctcttgaat caattcattg       960
     ttttgtaagt ttttctaagg tttacaggcc cttttattta ggcgtctata cccctccgcc      1020
     cctctctgct acaataaggc ctttaaattc taaaatattt atacattcga ctgtatgtct      1080
     aaaaaattat ttgacccttg cgaatccaac cttttattta aaaacatgat tgatgaaaat      1140
     aagctattcc aattcatata tcataaaatt tgttcacaaa gtcatatttc cacagcccta      1200
     ctgcacctta cgcaaaaaat ccatctagaa ttgaaaaaaa aactttctca aaaacgttaa      1260
     atgattagcg acacgtccaa aatgagcgct ccgtgagcga aatatgagcg cgagcgcgag      1320
     cgtggagcaa acgcgagctg aaaaaatcgg agcaaacgtg agcgcgggca aacgtgagct      1380
     agctcgcgca gcgctcctcc tcacgaatga gcgaaaagtg agcgctcacg agcgcgtgag      1440
     cgcgtgagga acgcaacact g                                                1461
//
ID   DNA8-5_HSal repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 19.04, Created)
DT   30-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-479
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 835-835 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to consensus.
XX
SQ   Sequence 479 BP; 125 A; 116 C; 114 G; 122 T; 2 other;
     cagagctgga gacgatctgc acatttcggg cgaaattcaa gaggtgacgc ccaccgtccc        60
     cctgccaccg ctccgcgctc agcggccgag gcgacgatcg cggtgcgctc aggcccgtcg       120
     ctgtataaga aatcagctgg agcgcaccct cgcgtcacat tatcattaaa attttttcct       180
     cgtttaataa tcactttaaa atatatatgt ttatgcgtta twtatatata tatatataca       240
     tataacatac atatatgtat aacacgtaaa catatatatt ttaaagtgat tattaaacga       300
     ggaaaaaatt ttaatgataa tatgacgcga gggtgcgctt cagctgattt cttatacagc       360
     gacgggcctg agcgcaccgc gatcgtcgcc tcggccgctg agcgcggagc ggtggsaggg       420
     ggacggtggg cgtcacctcc tgaatttcgc ccgaaatgtg cagatcgtct ccagctctg        479
//
ID   DNA8-5_LMi  repbase;    DNA;    INV; 1333 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.11, Created)
DT   10-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1333
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2977-2977 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1333 BP; 421 A; 248 C; 251 G; 413 T; 0 other;
     ggtaaaggtt tcatacgtgt aggcataatt tctccgtact taattacgac ataccttacc        60
     ttaaaatacg tgttttgcaa atgtctttca agcgccgtta catttaagct gccagctttc       120
     gtaatattga agtataaata caaaatccac caaatacggc acatttgctt ccgatcgcct       180
     gaattggagg ctgcgcaacg cgatgttcat ttgttgcaga ccacgtgatt atgtggccag       240
     cgaatcacag cacaaagaag agtatcgtcg tcagccaatg gtaaccaaac ctcaccgccg       300
     cgcaacatgc aaataagaat ttttgacgtt ggaaattaaa tatgcggtaa tgtttttata       360
     cacgaaaccg cgcaatgttt acaagatgtg aaaattaacg tgttaacatg aagtttcaat       420
     tattttattt tcgaaatcac ttgattacac tttcagacag acgataaaat aaataaaaca       480
     tgctatacct gctctatggt tgacaggttc ttgtatgtac ccttgtccgg tcagtaacag       540
     ttaatggcct cgtaaaatga agatttagaa ttagttgatg actgtttcgt acatataaaa       600
     taagtaaata gtactatatg gttgaaggat aaagtgattc taaatcttca ttttacgagg       660
     ccaatacttt tactgataaa gggtcataca agacctgtca accatagagc aggtatagca       720
     tgttttattt accctatgat tgtacgaaac agtcatcaac taattctaaa tcttcatttt       780
     acgaggccaa taactgttac tgaccggaca agggtacata caagaacctg tcaaccatag       840
     agcaggtata gcatgtttta tttattttat cgtctgtctg aaagtgtaat caagtgattt       900
     cgaaaataaa ataattgaaa cttcatgtta acacgttaat tttcacatct tgtaaacatt       960
     gcgcggtttc gtgtataaaa acattaccgc atatttaatt tccaacgtca aaaattctta      1020
     tttgcatgtt gcgcggcggt gaggtttggt taccattggc tgacgacgat actcttcttt      1080
     gtgctgtgat tcgctagcca cataatcacg tggtctgcaa caaatgaaca tcgcgttgcg      1140
     cagcctccaa ttcaggcgat cggaagcaaa tgtgccgtat ttggtggatt ttgtatttat      1200
     acttcaatat tacgaaagct ggcagcttaa atgtaacggc gcttgaaaga catttgcaaa      1260
     acacgtattt taaggtaagg tatgtcgtaa ttaagtacgg agaaattatg cctacacgta      1320
     tgaaaccttt acc                                                         1333
//
ID   DNA8-5_PBa  repbase;    DNA;    INV; 941 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-5_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-941
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 605-605 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 941 BP; 358 A; 110 C; 138 G; 335 T; 0 other;
     tagagacact acaatcagag actggccacg attctgatcc gccatgtttt ggctaaatcc        60
     tacgagaaag aaagaaatat acaccatctc actctaacca ataacgtgtt ttggtagagt       120
     gaaagaaata tacaccatct cactctaacc aatagcgata ttttttactt tgcatgtgca       180
     ttgatttaag tgtattgtgc atgtgtatta aacacgtgga aagcgtgata atatattatt       240
     aaataataga gatactaaaa ttgcaaaata tagtcataaa ttaattaatt gtgataaatc       300
     aatataaaaa atgggtggat gttcattttt ttacttaaat tttattttat attgtaataa       360
     agtttgttta taataataat aaatatgtat aataatcctt tctaaaaaaa ggcatgacat       420
     cgatacttgc atctctcgaa atttcctcga agtttattgt tgacgctttt ccgcgatggg       480
     ttctctcgct gcgctaactt tgtgaatagc tgtcattgta ttgatttcac agaggatcgt       540
     tttgacaatt gtgtatcaaa aagttaaaaa tattatagtg taacagtagt ataatagtat       600
     tatattaatt tttgctcttg tgttgaaaaa gataaatagc gaaaaaaaag ataaataaat       660
     aaatagtaat aaatttaaaa tcgttaatat taaaggaaat atattaataa atacgatata       720
     ttaataaata tattaataaa ttggtaatat aattatgtaa aataaagttt tataaatata       780
     cacattttat tacctttaaa acgcttatgt ttttaaatta taatattaca atttaagatt       840
     aatgtagtta atgtatttga aaataagtgg gaatagccaa aagatggcgg accaatcaaa       900
     agttgctttt tcgtgaccag tctctgatta tagtgtctct a                           941
//
ID   DNA8-60_AP  repbase;    DNA;    INV; 911 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-60_AP.
XX
NM   DNA8-60_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-911
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1994-1994 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 911 BP; 327 A; 167 C; 129 G; 288 T; 0 other;
     cagtggcgca acttgataat aaggggccca tgtgaaaatt tctagaccgg ggcccttacc        60
     tgctagcaag aattaaacac agtacagcac ttggtataaa tcgaacgtgg ttcaaagtac       120
     tctttaaact ttcctaatat ctccaagaac aatttgaaat tttcacaaaa tcggtcaagt       180
     agtttttgag aacctatata atagccacag cttacaaata tacatttaac tctcatgttt       240
     gttttaagat ataatttctt tattcgaaac cataagcgtg cgacgattta atggatcctt       300
     ttacctcatc taccagagta actaatggca aacatttaaa atactatttt ttactaatta       360
     tttaaaaaaa aaaaataaac aaaaatgtct atcgtaaatc tcaaaatacc tctccgggtt       420
     gaaccaactg ggtctaatag tgaatctaaa ccattcagag actctctcaa aaacacacaa       480
     aaaatgtcca gtggtttagg aggagatcaa tgacatacag acaaacattt atttgtacta       540
     tatatataga catagattgt tattattttc ggccacccgg cacccaattc attttaccaa       600
     acaaaattat tatacattaa aaccttcccc gtgactcgac cgatttacta gtgaaaaccg       660
     tattaaaata agtagagttc ttttcgagat atgctcgtac atacaaaaaa ggggcttcta       720
     ttttataata tatatatata tatatagatt aatagattat attatattaa ttgtattaat       780
     atttaattat tattatatta ttttgtatat tacacattat agtaggaata tcgtatatga       840
     gatctcgggg ccccaaaaat cgggggcccc tgtgaattgc acacccaaca ctcccgataa       900
     ttgcgccact g                                                            911
//
ID   DNA8-61_AP  repbase;    DNA;    INV; 647 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-61_AP.
XX
NM   DNA8-61_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-647
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1995-1995 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 647 BP; 329 A; 66 C; 56 G; 196 T; 0 other;
     cagggatgga aaacgttttt aaaaaacgtt attaaacgga aaaaaaaaca aaaacgaaaa        60
     caattaataa aacaaaaaca aaaaacaact gaaaaacgat aacaaaaaat cccaaaaacc       120
     gaaaaaaatt taataacgaa atcaaaaacg aaaacgaaaa taaattatag tattatacat       180
     tattaaatta taccacgaaa aaaaaatttt tgaaaaaaat tcacttgtct ttacttttta       240
     atctttaact ttaaaaacat tttaatttga aatcagaaat tttgaatttt ctaattttta       300
     tataaattat aattttgatt taaaatttaa atattaagaa taattaattt taatttttaa       360
     cttttaagtg catttctgta ttgcgcgtta ctattataac ttaaaagtta aaagttataa       420
     gttataagaa tataatataa aaaaaaaaaa tattatcaaa aacgttattt ggaaacaata       480
     ggaaaataac gtttttaaaa acgttaatcg aaaacaatat ggaaaaataa cgtttttaaa       540
     aacgttaatc aaaaacgata tagaaaaata acgtttttaa aaacgttaat caaaaacgta       600
     ataaacaaaa acgaaaacga aaaaattaaa aacgttttcc atccctg                     647
//
ID   DNA8-62_AP  repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-62_AP.
XX
NM   DNA8-62_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-223
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1996-1996 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 223 BP; 64 A; 42 C; 59 G; 58 T; 0 other;
     agggccggat tggttaggcg agctaccgag aaaatctcgg tgggccgctt aaagtttggg        60
     ccggtcctgt gagtgtgagt gaaaataaat tcatgtttaa aatacgattg gccacctata       120
     agctcgtaat aattatagac gtaattttgg gccactgaat atgtaaatgg gccgcttata       180
     gaagtgaaaa tctcgatggg ccgatacata ccaatccggc cct                         223
//
ID   DNA8-63_AP  repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   22-JUL-2015 (Rel. 20.07, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-63_AP.
XX
NM   DNA8-63_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-168
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1997-1997 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
CC   Reclassified as hAT element.
XX
SQ   Sequence 168 BP; 45 A; 30 C; 47 G; 46 T; 0 other;
     cataggcgca aatagcgttt gagatttggg ggggctaata gggctaatag ggccttactt        60
     tgataatatt gaataagctt aaaacaaaat gtaggaaatg tttgggaggg ctatggacat       120
     ttttgggggg gcttagcccc taaagccccc cccctatttg cgcctatg                    168
//
ID   DNA8-64B_AP repbase;    DNA;    INV; 924 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-64B_AP.
XX
NM   DNA8-64B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-924
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1998-1998 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 924 BP; 270 A; 123 C; 158 G; 371 T; 2 other;
     actagggctg ggatttcgat gcactttgca ttgttttcca aagcttactg tgcaatgctc        60
     gtcttgtcac aaatttgttt tatgtacatt tgaatgagaa taagaaagtt tattttgcat       120
     ttttttgcat tttttggcat tttttagttt ttaggtcatt ttcttaattt tttagggcat       180
     tttagagttt ttggagcatt ttttgagttt ttggaaacca agtgtatgaa tttgaaattt       240
     tctattttaa gatttttaca ccaacatggc ttttaaataa attaactagg gctgggattt       300
     taatgctaga ttataagtag gtactcgtaa ttcgtattat attatcggct tatcgccatt       360
     atcggacaag gtttgagtaa cctctacacg catttcctgt taaataatct taaatcggta       420
     aaatcgacgt ccgatgatat cgttcgacgt tcagtacgag ttttgtcgtc gttaacaccg       480
     ttttattact ctagttaatt ttttttgata atttaatata aaaatgccaa aagtaaaatg       540
     ttcgacagcg agtcgactgc gtgcgtttgt acaagaattt ggacataata ttttttxtac       600
     cgacggaxcg gtgttattct gtaaaatatg caacgtgaaa gttactgctg aaaaacgatt       660
     tgccgtacaa caacatttgt caagagataa acatatcaat ggtttacact cgtaatagat       720
     ttttataatg cattttttaa aactttttat tgtaatttat actaaaatta ttaaaaacaa       780
     aaaaattttt agatcataaa agcatttttt ttagggcatt tttcgggttt ttttagggca       840
     ttatttagag tttttaggtc ataaaagcat tttttttagg acatttttcg ggttttttta       900
     gggcattaaa atcccagccc tagt                                              924
//
ID   DNA8-64_AP  repbase;    DNA;    INV; 622 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-64_AP.
XX
NM   DNA8-64_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-622
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1999-1999 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 622 BP; 162 A; 84 C; 86 G; 290 T; 0 other;
     tagggctcgg aagttgatgc attttgcatt tttttttaga actttttaga cgatgctctc        60
     ctggccacaa atgtgtttca ttagcatgtg aatctgaata actaaatttt attttgcatt       120
     tttttgcatt ttttggtgtt gattactttt taagtcattt tttgacattt ttaggtcatt       180
     ttcccacatt tttagtcatt tttactgatt tcacgctagt tcacttctta tcgtttcttg       240
     tcgaccatta tgccgataac ttaaaacttg gaaattacca cggactaagt tagtacctat       300
     ccgattttat ctcgccgatt acatttgtcg ttgtcgtgtt gtagtgaata ttattatacc       360
     tacattttat tattttattt cattttttaa ggacattttt gtcatatttt gagcaattcg       420
     aagctttgat aaatttatat agaattttat agtaaaatag agtaaaatat ttttaaaaaa       480
     atgtattttt attagtttaa aactaatatt tgcaattttt taggtcattt tttaaggaca       540
     ttttttgtca tttttatgtc atatttgcat tttttttagg tcatttttta ttgtttttaa       600
     ggtcatcaac ttccgagccc ta                                                622
//
ID   DNA8-65_AP  repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-65_AP.
XX
NM   DNA8-65_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-168
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2000-2000 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 168 BP; 41 A; 36 C; 45 G; 46 T; 0 other;
     cataggcgca atttcaactt ttgacttggg ggggctgaat atattaaagg caagcagacc        60
     attgcaatat agcatattaa aattgtatgt cctaggtttt ttgggggggg ctacggctaa       120
     gtttgggggg gcttagcacc cccaagcccc ccccaatttg cgcctatg                    168
//
ID   DNA8-66_AP  repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-66_AP.
XX
NM   DNA8-66_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-578
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2001-2001 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 578 BP; 193 A; 72 C; 76 G; 237 T; 0 other;
     cagggctcgg aagttgtagc aaatgcatat ttttcttggt tcgtcctaga acatccaaag        60
     taagatacaa atatgtatca tacttctctg atgtcataca cgaaatttta ttttgctatt       120
     ttttgcatat ttacggtttt tattgctatt ttgctaattt agggtttata gtgctatttt       180
     taggcatatt ttcttaatat acataatata tacctacata ttatacaaaa tataggaaat       240
     tatcacatta tgttgaaaat aatgattaat ttggttagga aataggaaat aaatagatct       300
     tataagtaca cttttacaaa catatttaag taatttaata tatattttgt taacggttta       360
     taattcaact agtccagaca gtccctgatg tctatgagcc caacaatttt ataaaattgt       420
     ataattacat ttaacttttt aaaataaatt taattttttc aatttaaatg catatttttt       480
     gattttttgt gctatttata gcgcatattt tggagttttt aagtgcatat ttaagagcta       540
     aaaagtaaca tttttagtgc tacaacttcc gagccctg                               578
//
ID   DNA8-67_AP  repbase;    DNA;    INV; 382 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-67_AP.
XX
NM   DNA8-67_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-382
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2002-2002 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 382 BP; 151 A; 45 C; 42 G; 143 T; 1 other;
     tagtgatggg caacaatatc gataattcga tacgatatcg atatcgtgac aaattttcga        60
     tatcgatatt atatcctata tcgggaatta ttgtaacaag ttttttttct tatcttcaat       120
     tagcaatgta aagcaaattt ttgaattaat aaataataat tattaattca atatttatat       180
     ttatttattt atattaatta ttaattttaa taagtaataa ttaataacta ataactaata       240
     agtactaagt aggtaatatt taaaatantt taaaaatatt ttcgatacga tatcgatatc       300
     gtacaactta cgatatcgcg atacaatatc ggaaaaatcg gaacgatatc gatacacaaa       360
     attatatcgt tgcccatcac ta                                                382
//
ID   DNA8-68_AP  repbase;    DNA;    INV; 764 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-68_AP.
XX
NM   DNA8-68_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-764
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2003-2003 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 764 BP; 226 A; 101 C; 140 G; 297 T; 0 other;
     cagtgctcga attggggggt gcgcaggggg acggagctcc cttactattt ttattttttt        60
     tttgcgtacc cctacttttt ttacttggac ggggggacgg tacaaactaa tgtccgaaat       120
     aatttttatt aaaatgtgga tttcaattga tgtcaattat ataacaagtt ttactatttt       180
     tcatatcaaa attatttttg atattagttt attaattaat tataatatca gcctgtgttt       240
     tgcctatata gtcagtagtt cacagatcat agatcatata caagtatatt atctaaggca       300
     cagatactga tgtgtgctag tactatctta aatcgtgttc cgaatgaaat gttatcagtt       360
     tcagttatgg ttatcattta tcggtgtttt tgaattttta aatttttaaa tttttttata       420
     cttatcaaaa tatgtggtct cttttgaatc aaaaacaata attattaatt ttgttatcta       480
     tttagtatat tgaataaaca ggtagattat tattaatttt tttttctact gtaacaatgt       540
     aagatgtaga tataagatat tgctatcaaa atatattata cctatttgga attcaaaatg       600
     tgttgctgaa aagtggtatt caaaatgtat gtagataagg caggagcgtg gggggagggg       660
     gcaaggcccc cacgggtctg tgttgagtaa atgcgccctt ggaacgcagt ttttaaatcg       720
     ttagattgag ctcctctact taatttttcc caattcgagc actg                        764
//
ID   DNA8-69_AP  repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-69_AP.
XX
NM   DNA8-69_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-439
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2004-2004 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 439 BP; 138 A; 69 C; 73 G; 159 T; 0 other;
     cagtgtcggc ctggcccagg cggctaggag gcgatcgcct ccgaggcccc gacccgggta        60
     tttttcaaga aataaatgaa attatttacc aaaatgtacc tactatatat agcccagtgg       120
     tatgcgtttg gatccactaa ataattttat aataataata taatatacat tttattattt       180
     taatgatact aaaatcataa tatcttagtc cgtggtaata atacaattat atgataattt       240
     tggaatctat gattatgttg aaatacgtac tgtgatgttt gatcgatatt atattactat       300
     atatataata tatatcgatc catattatgt gataaatatc tataaaacgt ttttaaatta       360
     tttttttgag atttggtatt tttgagaggc cctttgaata atttgcctcc tgggcccttt       420
     agatcccagg ccgacactg                                                    439
//
ID   DNA8-6_AP   repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-6_AP.
XX
NM   DNA8-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-172
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1748-1748 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 172 BP; 32 A; 56 C; 36 G; 48 T; 0 other;
     cagtggcgga tccagggggg gggcaaaggg agcatttgcc ccccccccaa caccgtagtt        60
     ttcctttgtt ttacactgtg tttagccaat tttgtagcca attttgcaac tttttgtact       120
     tttgcccccc cccccatgcc cctcccaaaa ttaagccctg gatccgccac tg               172
//
ID   DNA8-6_BTa  repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-432
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 881-881 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 432 BP; 116 A; 104 C; 81 G; 131 T; 0 other;
     cataggcggt tctagacctt catgcttggg ggtgcccaga ggtggaaaat gtcggagacc        60
     ggccccgaag gggacggtcg ctcaggggag gcctaagttt cggccctcaa gttttatccc       120
     tttcctaccc tcctttctct ttttctctcc ttcctctcta cttaaatacc tataaattca       180
     atgtagaaaa tttttagcaa aactttccat caaaactaca atcttaccat aaaaaaacag       240
     tagaatcttt gtaaaacacg gctatcaata ttaattctgt ttaaaacatt ttcaattaat       300
     tgctgggatt ttttctcagt gtgagcgaat acagaatctt taaaagcagt aatttcacgg       360
     ttccgataac cgtacttaat ttttgcttgg gggtgcccgg cacccactgg cacccccgta       420
     gaaccgccta tg                                                           432
//
ID   DNA8-6_CQ   repbase;    DNA;    INV; 1107 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1107
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 83-83 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >88%
CC   identity. 8bp TSDs.
XX
SQ   Sequence 1107 BP; 397 A; 158 C; 159 G; 393 T; 0 other;
     tagggcgtcc aattttcccg ggttttgaat ttcccgggaa acgggaaaaa tatttttcaa        60
     atcccgggaa ttcccgggat cccgggaaat tttttaaaca gtcataaaat ctatgttttc       120
     attaaatttg ttatgttttt caagcttaca atcatagaat tagctcaata ctgttaattg       180
     gtgataatct ttacttcaat ctgaacaaga acagcagttt ttagtaagtt taaaaatatt       240
     aaaaattgtt gttttttgtt ctttgttatg ctttggattt ttaatgaatc ataatttcta       300
     atccaatgtg attcaaatta tttcatatta ataatcataa aattcttatt aatatatttc       360
     ttttatattt ttatatgaaa tgactacaaa agctaaaaaa tttcattgaa actgtaaaaa       420
     aaacaagaaa cgaaaacaaa tagaatgaaa ccatatgacc atccaatgta aaattttaga       480
     aaagtttaga atttcatgtt ttatataaaa catattttac aaactatctt taagtcacta       540
     ccgccaactg ggggaaatcg ggactgcagt ctgaataggt acaggatatt ttagagcaat       600
     aaatttgaaa attggtgtac taattgtttt gttaattaaa aaaatatcag aacattatgc       660
     tgtcttaatt cgttactatt gtcctaattt gctccagatg ccgatgtctg atgaaaaata       720
     attaaatatg ttttttttca agtttaaaat catcattaaa cgtaaatatt taaaaaataa       780
     ataaaattta atgaaaaata tttaaagcgc taggcatttt gcggatccgt aaactaaaat       840
     tttaataatt ttcccttata agccaaataa atgttgatat atgccgaata caaatttgct       900
     aatgctttaa aattgttatc gattactaag tattcaactg ttcatctatt tccacaacca       960
     aatctgagtt ttcagaccaa aaaatgattt tttttcaatt tcgggaattc ccgggacaaa      1020
     atatcaaaaa tcccgggatt cgggaattcc cggtttaggg aaaatcccgg gatttttgtc      1080
     ccgggaattc ccgggatgga cgcacta                                          1107
//
ID   DNA8-6_LMi  repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.11, Created)
DT   10-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1589
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2897-2897 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1589 BP; 504 A; 306 C; 290 G; 489 T; 0 other;
     cagcgagcac agaataacat agagaggcct tacaatgaca gtgaaatgaa gccggctgag        60
     agcgcgacac ccaaccaaca tggcggccga gcgccagccg gccacagctg cgagcacagg       120
     gtagttcatt gagttcgctg tctgttaatt cctttttcat atattttaag gcgttccttt       180
     ttgacaatct atttttgcca taaataatta caaatttcag ctagggatag caaatcatac       240
     tattatataa aatagaagca catttttcct ctgtctgtcc ctttaacctt ttataactcg       300
     aggagtaccg aacgtatcgt catgcggttt cttttaattt cttctttaga atcctgggat       360
     aatcttaggc tatatttaat gtcaatacga atatatgaaa aaaaactaaa ataagaatca       420
     taacgtagaa tcgtttaccg cttctgcact ttagtcagct ctggagccta aactataaga       480
     gctaggccag tgtacatagt ataaacttgc agaactcaca aacatctaca aaaaaaaaaa       540
     aaacacattt atcatttttc ttttctaaag cgctggcgcc agatggcttc agactacaga       600
     tatagtgatt gtgggagatc tgtaaaagtt agacatatga tctcgcggtc tttttttttt       660
     tttttaaatc gtcgtgagtt ctataattct atactatgta ctttggcgca ggtctcatag       720
     tttacgctac aaaggtcacg aaagtgcgga agtggtaaac cattctacgt tattattctt       780
     atttcaatta tttctcattt tcgtattggc atttaatata gcctacgttg aacacaggat       840
     tataccgaag aaattgaaag aaaccgcatc acgatacgtt ctgcagttct cgagttaaag       900
     tagtttaaag attacccgtg caaagccgga gcggctcagc tagttagtaa taaaataaat       960
     aaaaagtgtt aagtcataat tattggatac cgaaaattgt atcccaaatt acaaatgttt      1020
     atcaatattg gtcacaaagt acaaggtgag tgggcaacag aatctgtgct cgctggtggg      1080
     caagctcgct gaaagtaacg agtagaattt gaaaagttcc accgctctat tgtatccaaa      1140
     tttgtgagaa aaccagggga gctataaaaa agttgtttaa ataaaaagaa aagttcattt      1200
     cattatctac aactttctcg ctgacgaaaa tttcctgacc acaaaacaaa aaaagtggca      1260
     ggcgactaac tttttcatgt cacaattttt atttcatata aaagtaatag tttcaattat      1320
     tatttttata caaacacaat acgtattgta cttgctaaga acactgttgc attccttcag      1380
     tattcacctg tctacgtgaa aaatttggta atttttttcc tatcctaagg ggttcaaatg      1440
     acaatgtaat taaggcgagc gccacttgaa gaactacgca tttatcggcc caactccgtt      1500
     tctacaccca accaagatgg ctgccgggct tcactgcctg tacgctgatg taggcggtat      1560
     agcctctcta tgttattctg tgctcgctg                                        1589
//
ID   DNA8-70_AP  repbase;    DNA;    INV; 545 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-70_AP.
XX
NM   DNA8-70_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-545
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2005-2005 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 545 BP; 271 A; 61 C; 41 G; 172 T; 0 other;
     cagggatgga aaacgttttt aaaaaacgtt attaaacgga aaaaaacaaa aaacgaaaac        60
     aattaataaa acgaaaacaa aaaacaactg aaaaacgata acaaaaaatc ccaaaaaccg       120
     aaaaaaattt aataacgaaa tcaaaaacga aaacgaaaat aaattatagt attatacatt       180
     atatttatac cacaaaaaaa aatttcactt aagtctttac tttttaatct ttaccaatat       240
     gcacttttaa aatttaaaaa cattttaatt tgaaatcaga aatttttaat ttttaatttt       300
     tatataaatt ataattttga tttaaaattt aaatattaag aataattaat tttaattttt       360
     aacttttaag tgcatttcta tattgcgcgt tactattata attaaaaata aaaacaatat       420
     tatcaaaaac gttatttgga aacaatagga aaataacgtt tttaaaaacg ttaaacaaaa       480
     acgatatttt ttaaatcaat aaacaaaaac gaaaacgaaa aaattaaaaa cgttttccat       540
     ccctg                                                                   545
//
ID   DNA8-71B_AP repbase;    DNA;    INV; 649 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-71B_AP.
XX
NM   DNA8-71B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-649
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2006-2006 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 649 BP; 216 A; 71 C; 82 G; 280 T; 0 other;
     tagagcgcgg atatttaggt ttttacatat ttttattggc tttatgcagc tctacgagga        60
     tgagaaatgt ggacgattta tccatcaaag agttcgtagg aaaaaattta ttttgcatat       120
     taaagcatat tttggacatt agagaatatt tggcctattt tacatatttt agaatatatt       180
     ctattattgt ttctaaaaca tcatgtatat tgttaatttc tcgatttgtg attttttcta       240
     gctacaatat tttatgaagt acatcacatt ttttatattc aaataactta gctgtcacca       300
     aagggcatgc aagttatgta ttgtttttat taaaatattt tgttttttta tatatatatt       360
     tcattatata atcatttcac tatcatttca catatcatta tacctatgta tgaattgttt       420
     taaatttttt atatttaaat aatttacctg ttacctacca aaggaatgat agtgtatact       480
     gtataactat aaagttatat attgttttta ttgaattatt ttgaaaaaaa aaatcatatt       540
     atttgcatat ttaaaagttt aaagcatatt tagagaatat tttagggttt ttttagagca       600
     tattagcatc atattttaag cttttaagaa cctaaaaatc cgcgctcta                   649
//
ID   DNA8-71_AP  repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-71_AP.
XX
NM   DNA8-71_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-551
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2007-2007 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 551 BP; 196 A; 54 C; 74 G; 227 T; 0 other;
     taaagaccgg atttatatgt ttttacatat cgttactggg tctatgcagt cttatgagag        60
     taaaaaatgt ggacgattcg ttcaattctg aatgcgtaga aaaaagtttt ttttgcatat       120
     ttgagaatat ttcatgggtt agagaatatt taacccattt agcatatttt ggaatatttc       180
     gtaaattgtg agaaaaaatt tgtatttatt tttaatttta atattacggt acccagaaaa       240
     attttttttg aacatttaca attttttttt tatcatttcc aactcttact aaagtgcaat       300
     agtattccat tagaatacgc aacttttaat acctaattaa tacctcacta ttaaaataat       360
     gttgaaaaaa aaaaatttta aaatgcatat taaagcaaat aatgatgttt attgattatt       420
     tttgcatatt ttgcatattt tagcatattt tttaaatttt taagagaata taatgagaat       480
     atttgaaggt tttttagaga atattagcat catattttag gtattttaag agaatataaa       540
     tccggtcttt a                                                            551
//
ID   DNA8-72_AP  repbase;    DNA;    INV; 413 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-72_AP.
XX
NM   DNA8-72_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-413
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2008-2008 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 413 BP; 153 A; 49 C; 71 G; 140 T; 0 other;
     caggggtctc caaccttttt ttacggcggg ccaaaattga gatacgcttt ggcatcgcgg        60
     gccaacattt ttagaggaat agatcggtta agaaattgaa gaatagataa gatttattta       120
     gaaaaattaa tgtttgttta tatacttttt ttattttata acgagttttt ctattattag       180
     ttagtgttag taattagtat aatataggta taaattacta ttataagctg ttacgaataa       240
     caccaaaaga aaaaaactaa taaattaatt ttatttaatt aattcaataa attaaaaaca       300
     atgaaaacta aatgaaaata atataataaa tatattattt tcgaaacatt aattagcttg       360
     gcgggccggt gaaaaaccct tggcgggccg gattcgtagg ttggagaccc ctg              413
//
ID   DNA8-73_AP  repbase;    DNA;    INV; 784 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-73_AP.
XX
NM   DNA8-73_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-784
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2009-2009 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 784 BP; 314 A; 102 C; 94 G; 274 T; 0 other;
     tagggctggg attttaatgc cctaaaaaat ttcaaaaaat gcccttaaaa aaatgcaaaa        60
     atgacttaaa aaactcaaaa aatgcattta aattatattt attatagctt aaaaattaga       120
     aaaaaaattt taaattatac tacagtaatg tatttttttt tgtttattgt acgttgttac       180
     ttgtttagtt tttttatgct tctgttttct taatcattca ttcaaaaata ataattttaa       240
     aaaaaatttt aatattttaa cttgtttttg ctagttgtta ttaatactaa cctgaacaaa       300
     atcgctattg cactgtataa tgatatgcct agctatgata aaattgttat cgacgataac       360
     ttgtacctat gtatgtatgt atggtgtaat aaaaataata attcataata ggtataacat       420
     aacggtgata attttcgtgg aaaatcctag ctatgatgaa atatatgaat atatgatact       480
     atatataatt tattattcgt accgtcagca gtttgccgaa agtttcttgt gaatcgcaac       540
     aattttcgtt cattttatga agaaattgtg aaaaatgctc taaaaaccaa gaaaatgcac       600
     taaaaacgtc gaaaaatgtc ctaaaaaatg catttaaggt taattttgtc aaaaaatgca       660
     aaaaaatgca aaataaaaaa tactttaaaa taatcagtat cacccaaaac acattttata       720
     cttacggatc aacgtttcaa aacatcagaa aaaaagatgc ctttgcatca aaatcccagc       780
     ccta                                                                    784
//
ID   DNA8-74_AP  repbase;    DNA;    INV; 902 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-74_AP.
XX
NM   DNA8-74_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-902
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2010-2010 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 902 BP; 273 A; 110 C; 106 G; 413 T; 0 other;
     tagagttagg atgttgatga cttttgcatt ttttttcctt ttattctgta caatgctatc        60
     ctagctaaaa atttgtttca tgctcccttg atgcagaata ttctaatttt attttgcatt       120
     tttttgcatt tttagctata aatgcatttt ttttcgtttt ttaacgtcat ttttcaacat       180
     ttttaagtca ttttttcatc ttttagggca ttttttgtac tttttataca atgtggggca       240
     tttttcacaa attatagatt ttagggcaaa tgttacaccc aagtttggaa acaaatttaa       300
     tttatttaaa atctaacttt ggatttggac tattagtaaa aaataatttt aatattatta       360
     ttgtggggtt tttgttgtga ttacatttat cgcgttccga taagatttac tctttgagtg       420
     ttatatattg atgaaacgag tgctctttca gacatacgcc gatcatacac gcttatcgag       480
     tattatattt ataaattgta tggaataaat ccgataaaca agattaaatt gacaattaaa       540
     ttgacacata ttaattgtac agtgcaacaa tgcaatatga atattattat aacatcaaca       600
     tcctaacact aataatgaaa atatttttaa tatatttttt ttttatttat attttacttt       660
     ttaatttatt tttaatattg aaatttattt ataaattatt taaatgcttc tactattaca       720
     cccattatta tacccatatc tctaataaaa attattattt ataaatacgt tttttcactt       780
     acttaattag tattttagat aatttttaag gtcatttttg aagtttttag ggcatttttg       840
     cgctttttta tttttttagg gcatttttgt gtgtttttta ggtcatcaac atcctaactc       900
     ta                                                                      902
//
ID   DNA8-75_AP  repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-75_AP.
XX
NM   DNA8-75_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-684
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2011-2011 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 684 BP; 218 A; 117 C; 96 G; 249 T; 4 other;
     ggtactttcc tgttatacga gactaccctg ttttgttcaa catcacaatc ctgttatcta        60
     agactaccaa aattatactt tcctgttata cgagactacg gctattatcg cgactaccac       120
     ccaagactac ctccgttatc gcgactacct atcttagctg atattatagc tgaattaaaa       180
     taatactaaa taagctgcga ttatatttat tatatatcta tcattacgta tattattagt       240
     ttttgtaatt ggtgtttccc acggcaaatt tggtacatta cgaataatta ttatgtattt       300
     aatttttttt tatanaattt gaatgtggcc atccccacaa tacataaatt attaattatt       360
     ttatttgtgg atttaccatt ttgcagtatt attattatta ttttattgtt ttccgtacct       420
     acgccgcgnc aaatttggca cttaaccgtg taaaatacat tacgaataat tactatgtat       480
     ttaatttttt tctttatttc attctgacca tccccacaat acatattatt aaaaaatata       540
     tcaaagaagg caagaaaant aaggtagtct cgtanaacag gaaagtacca ttttggtagt       600
     cttagataaa aggattgtga tgtttcacaa aataagcgcg gtagtcgcga taacggaggt       660
     agtctcgtat aacaggaaag tacc                                              684
//
ID   DNA8-76_AP  repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-76_AP.
XX
NM   DNA8-76_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-455
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2012-2012 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 455 BP; 167 A; 72 C; 70 G; 146 T; 0 other;
     cataggcgtg tccagacctc atccgcaggt cgtgcacaac agtgacatat ccaggggagg        60
     ggttactgca ccccccccca aaaaaaaaaa ttagattaag gtttgggaat atgaccccca       120
     aattttgaaa taagctttat catctgataa taattaaatc agttttactt tttttattag       180
     gaataaaaaa caatattcct tttatcagat aaataaataa ctaggtaggt tatatgaaat       240
     tgtatttagt aattttaaaa tataatttta atactaataa tactttttat aaatgtttat       300
     ttttacgtga tgaaaatcaa aaaacttaat acgaaatcag aaacttagat aaaaatgttt       360
     atattatgca ccgcaattta taatgtacct aagttggatc aaatttcgca ggtcatgcct       420
     gtgcatgaca ggcatgacct gtagacacgc ctatg                                  455
//
ID   DNA8-77_AP  repbase;    DNA;    INV; 1253 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-77_AP.
XX
NM   DNA8-77_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1253
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2013-2013 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1253 BP; 460 A; 170 C; 173 G; 448 T; 2 other;
     cagtggcgga tttaagggtt caaagaaagt cggcaaatca ataagagggg cctcctacaa        60
     aatttatcag taacatactt acccccattt cacaaaaccg atcgcctcgt ttgcgagaaa       120
     taatatcaac caatattcaa ttttatagta acaattaatc ttctaattaa aaaaaaaaaa       180
     atgttttagt ttttatttat ttttacaaat aaaacaaaat taaacgtagg tatataaaat       240
     gcctgtgtag aatgtagatn ataattaaaa tgtagcttga caaaaaacca atgcaaatat       300
     aaaaaaaaag tgaagccata aaattataca taatattata aaggtttaat ttgagttaca       360
     cacttttaaa tttcgtacta cacacttcac tttttgtact acacacaatt ttaggagctg       420
     ctatatacac aaaagtcgat gataaaatta ccattttata ttataattca caaaaacaat       480
     aatgatgtgt gtgtatgttt ntgtgggtga cggaccggtc ggctaggttg gcgagtgaat       540
     tggtggtgtg gaggcaatta ctcgttgctt ctatttataa ttttatactt aatttaataa       600
     taataatact tattttaaat ttcaatcaat actttatagt tatagtaata gttatatagc       660
     agttgtaaga aacaatgtcc taacccgtta aatgtataaa cataataata tgaaaaacat       720
     agtgcaaacg cattaaattc acagccctgt ttaccacatt tttcaatatt tatatgtacc       780
     tacgttgcga atttatcgcg aaaacggttt ccaataaatc atgatttacg ccgctgatta       840
     agtaataaaa agattgttat tatacttaca aaattattgt ttttattttc atgcaatcat       900
     gaattatatt atatattaat ttataattat aaataatctt atttgtgatc aatggtagtg       960
     ggtagaatgt agaataccta acttagattt acgtaggtat atataagtat ttacttcgat      1020
     cttttctact ttatttaatt ataatatttt ctacttttga agtattccta tatatttaaa      1080
     ttatttttat tattaaaaca atggtaaatt atattccagt ttgaaatata catttttttt      1140
     ggttaaaatt taaaaaaaaa atcaacttta taatttaggt gggcctcagt gcacaattta      1200
     ggagggggcc ccgttggcat ttgccgacta aacgaccgtt aaatccgcca ctg             1253
//
ID   DNA8-78_AP  repbase;    DNA;    INV; 624 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-78_AP.
XX
NM   DNA8-78_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-624
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2014-2014 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 624 BP; 280 A; 72 C; 62 G; 210 T; 0 other;
     agggctgtga atttaatgca ctaaaaaacc ttaaaaaatg tcaaaaaaat gcaataaaat        60
     atgcacttaa aatgcaaaaa atgcaatata aaatgccaaa aattatagta taaaattcac       120
     ttaaaatggt ttttaattta atttttatat ttatattgat attataggat attatacatt       180
     agtacattac attttacatg cataaaaatg tgtttattta ataaaaaaaa aaaataataa       240
     aaatattgat tgaatttgaa ttttgtataa tgctattcac ctgaaacatt tttaaaaatt       300
     ttttttatgt atttattttg ttaaaataat aaaacaaact taaatatatt tatttgcggg       360
     taccttattc atctttagtc tttactattg cattggacaa aaaaaaaaaa acaaaaaaat       420
     gtttttcaaa catgtcaatt gacggaattt gattaaaaat accggaaaat gaactaaaaa       480
     aggaaaatac gacctaaaaa tgcaaaaaaa tgcaaaataa aagtttcata aatggattcg       540
     tagttacata attcaaatta tgtacttaca aagctacgtt tcacaatcac caaaaaatgc       600
     actttcctac aaattcacag ccct                                              624
//
ID   DNA8-79_AP  repbase;    DNA;    INV; 833 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   09-NOV-2010 (Rel. 15.12, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-79_AP.
XX
NM   DNA8-79_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-833
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2015-2015 (2009).
XX
RN   [2]
RP   1-833
RA   Kojima K.K. and Jurka J.;
RT   "Classification as hAT.";
RL   Direct Submission to Repbase Update (09-NOV-2010).
XX
RN   [3]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [3] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
CC   [2] Weak similarity to hAT-9_AP in both TIRs and a protein
CC   remnant indicates it is a non-autonomous hAT. Similar TIRs are
CC   seen in DNA8-43_AP, DNA8-45_AP, and DNA8-73_AP.
XX
SQ   Sequence 833 BP; 284 A; 120 C; 123 G; 305 T; 1 other;
     tagggctcgg atttatatgt aaatacatat ttttactgtg acttgataaa ttaatttagg        60
     taagtgataa attcgtttca agggatttcc attgtaatga actatatttt attttacata       120
     tttttacata tttctcaata attccatttt tccctacata tttcgacaat ttacgattta       180
     ttaatagttg tatacgatgt atacgatttc ccatgtttca aaaagtacgt aaacaaaata       240
     ataccaatta ttgaactaat cgaccgtaat ctacggtcga tataatatta tgttcgacgt       300
     ttgtgacatc gataaatgat agataacgat ttattaatgc atagaacaag tacaaggacc       360
     cttgggagtt gcagtaaaax aaaaaatgca cagcgtatta caaaaaaatc ctggtttaga       420
     ctgcctaaaa ttaattagag atacacattg cgaaattaat ggggtaatgt ttccggctga       480
     actcactgct ttggacattg caaatatgaa atttgcaccc attacctcgg tggaagtcga       540
     gcgctccttc agtcggtaca aatctgtgtt acgaccaaac cgtagatcat ttaacttcga       600
     caatttgagc atgtatatgg tatctcattg ctttcaagat caagatcaag atgaataatg       660
     gtagtaaaat aagtaaatta gataataatg tcatttataa agcaatgttt tatatttttt       720
     tgtaattttt ttgtattcca tattttcatt ttttaatcac atataaagtg atttattatt       780
     acatatatat ttacatattt tggttttttt aatacatata aatccgagcc cta              833
//
ID   DNA8-7_AP   repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-7_AP.
XX
NM   DNA8-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-309
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1749-1749 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 309 BP; 100 A; 55 C; 57 G; 97 T; 0 other;
     cacggctata gatagtatgg ttgcccatcg acgtatgatt ctcatacttg aaaagtgtct        60
     accgaaatga atctctataa tcagtattaa agttaaatta aacagctgga aacttaagca       120
     ctagcgctta tatgtcatag tggctatcac ggaactacaa tttacatttg aaaggtaatt       180
     gcatttagag tcactacaac aaataagcgc tagagcgtaa gtttccagct gtttaatact       240
     gataatggag attcatttcg gtagacactt ttctagattc gttgggcaac catactatct       300
     ttaatcgtg                                                               309
//
ID   DNA8-7_BTa  repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-385
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 882-882 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 385 BP; 116 A; 83 C; 80 G; 106 T; 0 other;
     tagagtacct gtatagcgag agtatggaca gatcgcttca tggagggctt agggcccaaa        60
     agtgcagcca cccttctaac caacttctaa cgcacaaaat ttcactgcca gtctgcaggt       120
     tccaattcta accaagatgg ccaagaatgt acataaatga gcgttcttcc gcaaaattga       180
     gtaaatttat gcaaaaactg agtcaaacac gtgcttaata aacgacggtt cgtaacaata       240
     gtattagtaa atcgttctgg ataattgaaa ttcataggtt ggctgcattt ctgggcccta       300
     actttattcg cagaagcatc ggtgaaggcc tgatggattt tcggagtttc acatctgtcc       360
     atactctcgc tatacaggta ctcta                                             385
//
ID   DNA8-7_CQ   repbase;    DNA;    INV; 2900 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2900
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 84-84 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >87%
CC   identity. 8bp TSDs. 16-bp TIRs. It encodes a protein similar to
CC   DNA ligase 1.
XX
SQ   Sequence 2900 BP; 800 A; 629 C; 795 G; 675 T; 1 other;
     cgaggggcag gacacatgct ctaatcaact aaaataatcg gctaattgat tagaaattat        60
     cagttaatca attagtgtga cgctaatcaa ctaacggttc ccaccttcta tcattatctt       120
     ggtctgatga agaaatgtca aaaacacaaa acaaaaacaa tttttttccg cagaagccac       180
     aaaagttccg tcgggacccg gttgctgctg gtgccactgc aaacgacgag ggtcatttcc       240
     gttcgccgga tgtgaaagaa gtcccagctc caacacggtg tcatccgaca gcagcagaac       300
     aagcagctgt tcattgtgga aggtcgtttg tttttgtttt ttcgtcacgt ccgcggtctg       360
     cagcgccggc aagaaaccca aactggaggc ttcctccacc gaagagccgg cggccgggac       420
     gcaagtcgac gaagtggagg cgaattgtgt cgttcagtga ggaggaaacg ccgggaaggc       480
     caggtaggta gattataacc gattcactgt tatggagctg gctaaaacga ctatttttca       540
     cagcccctca tcggtcaaga aatccccgag cgacagcatt ccaggaggag gagaaaaatg       600
     tatagaaagt ccagatccag acagagtcca tggatcgttc aagtcggctg aaaagaagac       660
     ttttaccgtt gtaaagaagg agcaaccgga agtgaagcgc gaaccgtcgg aatcgccgaa       720
     aaggaggtga acamtaagaa caacatgatg agtttctcca cgagcgcaaa gagaaggcgg       780
     ttgcggcgat tctggccgcc tccaagaact acgggacgga gtacaatacg ggagaaagtt       840
     ctggcgaaag ggcgaaacgg tgacgtgctt ggcgcggacg ttacagatca tcgagcggct       900
     gcggatgatc gagattctgg ccaactactt ctggtcggtg gttctgattc tgagtccgga       960
     cgatctgctg gcgagtgtgt acttaagctt gaaccggctt gcttggcgcc ggcgtacgcg      1020
     ggcgtcgagt tggacatgac ggggagcact cgttgatgat gcgattaggc agagcacggg      1080
     ccgaagtttg gcgcaaattt tgatggacgc acagacgacg agggatttgg gcctggtggc      1140
     ggagcagagc aagagtagct atcggatgat gttccggccg gctccgcact cagtcaagga      1200
     cgtgtttggg aagttgagga agattaacaa gatgacgggg acggatgatg gacaagattc      1260
     agtcgatgtt tgtggcgggt cggcacggtt tggtttggtg gagcagtcgc tgctgtaagc      1320
     gttggcgcaa gcttgtgcga tgacgccgcc gaaccatgac ggttttaatg aaccggtggc      1380
     gaacgcattg agcaagtgtg agaaagcttc cgaaggcgaa ggtggaggac gttgcgttgg      1440
     tgctgaagac ggagtccgaa tttcaaccag attgtacagt tgctgctgga ggacggggtg      1500
     gttcacctgg tggacaagtg ttcgatgatg ccgggaacac cgttgaagtc catgttggcg      1560
     catccgacca agggcgttca ggaagtgttg gagcgattcg acgggatgat ttaagtgcga      1620
     gtggaagtac gacggagatc gggcgcttta tccacctgct ggaggacggc agcgtgaaca      1680
     tttacagttg gaactagggg aacaacacga gcatgtacct ggacgtgatt gcccggttgg      1740
     accgcactcg gaaggattcg ctcaagagta cattcctgga ctacgaaaaa ttgttggtgt      1800
     tgagcagatc tcgtgtctcg gaaaggctat catttgtaac acgagtgcta aattggggat      1860
     atccggatta tcattctaat ctggagatta cgtgtgaaat aaactttggt ttttacaaat      1920
     gggggtgggg gaatttcttt cgaatgaaag tacagctcaa gaactggccc acgtcaatga      1980
     tgatcttttg gtaattagca ctgccggaat cacaatggaa atagtgatca tattacccag      2040
     gcaacaacat tctggacatc gtaaactgtt cttttcctct tctaactcgt caaacgttga      2100
     attatccgca atttccatgg aggtccgcaa cttcgaagcg ccttaaaatt ccccccggaa      2160
     gaagctcgat tcgaatggtc tgaattatta gaaccgtgct tgcttccttg tttccggtta      2220
     tctgtctgtg aaaaaagcaa accttccggt tacggccagc ccaacctatc tgggccacgt      2280
     ttttagatcg ttactgccac aatagcagca agcggtagca gaaccaaaaa tcgtgccacc      2340
     ggaaaaaaag ggagtttggc tgagttggca gcatctaaag aaatccgtgt caaaaacaaa      2400
     aacttcatac agacccccca acgataaaaa cgactcggtg gaagcatcat ccgccggtac      2460
     ctgatgcgga gaaactccag gaccatctaa taaaagctcg atctccggga agttccgctg      2520
     gggacaccaa agattgaacc tatatttgtg cttcaaaacc atacttctca ctcaaaataa      2580
     aaaataaatc tccgaaaata atgaccagga ttggtgccgc agtccacctc tttcgcttgg      2640
     accacaggaa taacgataaa tgtcgtcctg gaaggagcaa ttttcacgaa attccgaatc      2700
     ggggttttag aatccttcca aaaacattgg aaacaaaaca cgtttgctgc tgtcaaaatg      2760
     actcttctcg atatgacaag atagtttaaa tcggggtggg aatgacgtgt cagttcagcg      2820
     ctaattgatt agctaattga cagaaaatta cgctagttga ttagcgttac aataattgat      2880
     taggtgtgtc ctgcccctcg                                                  2900
//
ID   DNA8-80_AP  repbase;    DNA;    INV; 849 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-80_AP.
XX
NM   DNA8-80_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-849
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2016-2016 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 849 BP; 261 A; 112 C; 101 G; 375 T; 0 other;
     tagggttagg atgtttatga ttttgcatat tttttttagg ttgtccaata gcatccattc        60
     ttatacagaa atatgtttca tgatatctgt attcaaaata tcaaaatttt attttgcata       120
     taattgcata ttttaccatt ttttttttta aagtgcataa tttgtgtttt ttctgttttt       180
     aagcgaatat ttgacggttt tcgatgcaaa atgctgtaaa acaccgtaat tttatatttt       240
     actgaatctt atataagttt gattatttgt atttcacaaa ttatcactta tttattgttg       300
     agaattcaat atggttacac ctataggtac ctacggagta cctacttaaa tagaattttc       360
     gataagcctc gtcaattgtc acagtcaaaa cttatcttaa aactgcgagc cattacaatt       420
     ttatcagata ttttaacaga acgtttaata atttatagtt agtttccatc ttgtctacga       480
     ccgatgtaga gtaccttata ttgcgcgttt cgtgttttat aataatttaa ataaatacaa       540
     ttttttacat agagattttt cgtttaatag attcaaaaac gtattagcac caaacagacg       600
     aagatttaca gcggaacatt taaaacaaac tttaattatt caatgcaact ctttttaatt       660
     ttttttatat tttatttaat ttttttcagt tttttcaatt tgtctatatg tttatttcat       720
     tttttgtcca ataatttgtt tattttttaa tgcatatttt tcaaattttt catgcatatt       780
     tagctggttt ttagtgcata agtgcatata tattcataca ttttttagtg cataaatatc       840
     ctaacccta                                                               849
//
ID   DNA8-81_AP  repbase;    DNA;    INV; 932 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   27-OCT-2014 (Rel. 19.11, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-81_AP.
XX
NM   DNA8-81_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-932
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2017-2017 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 932 BP; 315 A; 155 C; 130 G; 330 T; 2 other;
     caggggcgtg ctcacggggg ggggggtcat ggggttcaac cccccccccc ccccattgac        60
     cgtattattt ttatttttta ttataaaaca aataatgcat ctttataatg tacttgtcga       120
     attatattat cataaaattt cccaattcgt attttatcgt taaatgcttc caacttcgaa       180
     tatgtacact gccccgcagt tgccgatact tttaatatac ttttaatagg tactcaaaat       240
     ataaatttgt tttttaggct ttcagtgttt attttctgga acttattcag aaaactttga       300
     tgaacttgtt gaattttacc tcgatactga taagctaaca gttaaaagct taaagctgaa       360
     ctacatatat ggtataccaa acttaataag catgtaaaat atccaaaaaa ttgtttagaa       420
     gcgttgagac agtgtgataa agaaatattt cccaatatac attttntatt aaaaatacta       480
     tgcactttac cngtttcaac atccaccccc gagagaactt tttcttgtct caaaagattg       540
     aaatcttatc tacgaaacac aatgactgag gtattttctg gatattaaaa taaaaattta       600
     tatcaatttt tttaacattt ttttggtttt agactcgact taatggctta gctatgttag       660
     ctgttcataa agaaattcca ctaacagcag aagaagtttt aaatgaattg agcaaaaaat       720
     caagaaaact agattttgtt ctttaatttt tgaatgtata ttgtatatta gtataatagt       780
     ttctatatta gcaatataat atttaaatct ataaataatt gaatttgttg ttgattaaaa       840
     aaaaaaaaaa aatggtcgtt aggtaaaaga ctagctcctt caattttact tgaacccccc       900
     ccccccacat aaattttctg agcacgcccc tg                                     932
//
ID   DNA8-82_AP  repbase;    DNA;    INV; 749 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-82_AP.
XX
NM   DNA8-82_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-749
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2018-2018 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 749 BP; 324 A; 98 C; 101 G; 226 T; 0 other;
     gggttcggat ttgaaggcaa tataatcaat aaaaaaagca tttaaaatgt aaaaaaaggc        60
     aaaaaaaggc atttaattta tataaaaagg caattcataa atatatacta caaaataaaa       120
     tagtgaacat tttttaaaca ctttcaaatg cacacatttt gagaaaaata caaattaaaa       180
     atgagcatga atactaaact acattaagtt tatgctattt tgtataaata gattaccttt       240
     ttctttaacc aggtttgtcc taagaattag ttaaaaacaa ttttaaaaat taacttactt       300
     gagttatacc agttaattta atgcaaaata aactagttgg tattaaaaaa aaaattgact       360
     accatgtatt ttgataagct gtcttcagaa aaacggttac ggtttgggct caaaatattt       420
     ttatacatcg aaaaggatct ttctacgtcc accgaagtta tgggcgtacg ggtaatttta       480
     tggccatacc aaatactcga taagacgata tcgataaata ttgcgaagaa taaaacccat       540
     ttgtagcgat aatacgtaag ctgtgtataa aattataaaa tcaactgaaa attaaacaca       600
     aaaaaggcat ttataagtac aaaaggcaaa aaaaggcaaa aaaaaatgca tccatcgtct       660
     aagaaattaa atgaaacaca tttttgtata aaaattattt ttctattatg attaataaaa       720
     gaaaggcatt tgccttcaaa tccgaaccc                                         749
//
ID   DNA8-83_AP  repbase;    DNA;    INV; 883 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-83_AP.
XX
NM   DNA8-83_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-883
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2019-2019 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 883 BP; 280 A; 118 C; 157 G; 328 T; 0 other;
     cagtggcgta gccagggggg gggttgggtg tttaaccccc cccattgaca ttttccctcc        60
     taataaatat attgtttata gggttcggga ctgcttgcaa gttataaatt tgtcttatga       120
     aatggcgaaa ttaaatacaa agtttgaatt tgcatatttg tgtatttttt aacttaaatg       180
     tacatacaat tttcgggaaa aattatattt ggataacatt gaaaaatatc ttaaaaaata       240
     ttatgtttgg ttaggtacaa taggcgataa ctttgagatt tggggaggcc gataataaaa       300
     ttgaataagc ttaaaaaaat taagtaaatg tttgggaggg gcggagggct gttaaagttg       360
     ttggtggagc ttggctacag ttggccctat gttcgcatat gtaagatttc ataagtctct       420
     ttgtgacaaa actgtgttta aactataatt gacatctaga ttgtagattg tacgaagaaa       480
     tgaacatcag tagatatagg tacgtcgtgt tcgtttatca cggtgttcgc atatcacgtt       540
     attcgttatt acttatttat taacctagta ttgtatgcca gtatttttaa aaattaagtt       600
     gttatttatt tatttatcag gtttatatac ctacttattt tttagttttt tattaccaaa       660
     attgcaatat gttttatgat ttttcaaaaa taatataaaa atgttgctac atagtacata       720
     tatttaagca tattttgaga atttcgactg catatttcga taatttttag tgcaacaagt       780
     caagtcctga accctaaatt tatttatata cgaaaactgt aaaaacttgg ttttaatcta       840
     tacttaaaac accccccatt tcataatcct ggctacgcca ctg                         883
//
ID   DNA8-84_AP  repbase;    DNA;    INV; 563 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-84_AP.
XX
NM   DNA8-84_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-563
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2020-2020 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 563 BP; 183 A; 58 C; 82 G; 238 T; 2 other;
     ccagggctcg taagttcatg catttgcata taaatcttgc taagttgtat ttaatgctag        60
     atgacataga aatccatttc aaggtaccac ggttaaatat gtgaagtctt attttgcatg       120
     tttttgcata tttagaggtt ttttgcctat ttggcatatt tatgcgtatt tctattttat       180
     cgggcatatt atncatgatt ttgatattcc tatattgata ttattatatt aatatgcatt       240
     tttttatgga aataatctat gaaaaaatca aaatttgacg aaaaaaaatg cgataattta       300
     taatctattt tttttaattg tgacataaaa aaataaaata taattataaa aaaatgaatg       360
     gataattctt gttatttcaa aaattgttta tgattttttt aagtaagtat tttttaagtg       420
     catagtttta gatttttagt gcatataaat gcatattttt ntaacttttt aaggcatatt       480
     tcaatgcata ttttgccaat ttttgagtgc ataaatgcat gcttatttag gcatttttta       540
     gggcatgaac ttacgagccc tgg                                               563
//
ID   DNA8-85_AP  repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-85_AP.
XX
NM   DNA8-85_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-466
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2021-2021 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 466 BP; 142 A; 84 C; 79 G; 161 T; 0 other;
     cataggcgtg cgcagcccgt tgtggcagag tgggccaatg atacttgaaa caaattattt        60
     taggtgttac actgttatct ataaaattac attcatttac tcaccggtca tcacccactg       120
     tttaaatttt aaggtataat atatatattt ttattcataa gtagggctag gatttatatg       180
     catttgcata ttattttcct taagtccaaa ttgattggtt gtgatatatg tccacgattt       240
     accttatcct cgattaaata gaaccatttt ttgtttgcat attttataga tttaagagaa       300
     tcttgttaat tttgttgata taagaaaatc aaaaatcaga atgcttatac cactgaataa       360
     gacaatacaa ctatttatat gatctaagtt gccatctata ataagtatgg tacaactcgc       420
     agggtgggcc acggcccacc tggcccaccc cgtgcgcacg cctatg                      466
//
ID   DNA8-86_AP  repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   22-APR-2016 (Rel. 21.04, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-86_AP.
XX
NM   DNA8-86_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-466
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2022-2022 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Terminal 20-bp is similar to that of hAT_22_DR.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 466 BP; 154 A; 70 C; 72 G; 170 T; 0 other;
     caggggtggc caaacggtcg atcgcgatcg actggtcgat cttggacgat ttctaagtcg        60
     atccccttgt tagaatttat taattattct tatgcatttg tcatttagta gattcagtta       120
     ttaaatacat atatttcgga ttaacctgtt agtgtgaaat ggcattttct cacatgaaat       180
     ttataaaagc tgagtaggtt aggtttagac ttaagcacgg agtcttcgtt tggccatgat       240
     atatgcaacg acacgcttct acatcaacag taaaatgtta atacatttta aaattattta       300
     gaaatttaat gtgaaacact cattttagat aacttaacac tttaatttta ttatttatat       360
     aagtatgttt attattaata ttaaataatt tttttacatt agtcgatcct aaaagaaaaa       420
     atataccctc agtagatctt aatcaaaaaa agtttggcca cccctg                      466
//
ID   DNA8-87_AP  repbase;    DNA;    INV; 822 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-87_AP.
XX
NM   DNA8-87_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-822
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2023-2023 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 822 BP; 291 A; 144 C; 130 G; 255 T; 2 other;
     cagtggcgta atttggtcat gtttgtgggg ggggtagaca tttaaccccc cacaccaacc        60
     accaaaaaaa aaaaattggt ttatatcata aaaacctctc agtccaacca ttgtgatctg       120
     taatctgtat aatgtaagta gggtacatgt ataaatgcat gcatacatga aaataaataa       180
     ttacatacta tttaataaag ttttaaatgt actttttcga gtagattcgt ggaataatct       240
     gcgtagacgt aaaatactca aaattgcaaa cttcaaaagg ttataacctt ggaactaagt       300
     ccgaccgaca aattctgatt gcaccattgt acttaactcg ttgaaatata tagatttccg       360
     aaaaaaaatt tccaaaaatc gttcgagagc taaactgcat tttcnatgta gattcgtgga       420
     ataatctgcg tatgcgtata atatacgcaa aatcccgaac ttcaaaangt tataaccttg       480
     gaactaagtc cgaccgacaa attctgattg caccattgtg cttaactcgt tgaaatatac       540
     ctattactat aggtttccga aaaaattccc aaaaatcgag ctaaactgca ttatttcaat       600
     atatttgtgc aatattcaat ttgcaatagt gattagtgtt tattacgaag taatattatc       660
     ttagttacag ctaccatagg ggatttgggt ttttatttgt tgtttctata aaatatacta       720
     tattagtacc aataaataat aagtacataa atatggttcg ccagttaaaa aaaagtcatg       780
     ggggatacga cacccaaatc cccccccgta attacgccac tg                          822
//
ID   DNA8-88_AP  repbase;    DNA;    INV; 620 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-88_AP.
XX
NM   DNA8-88_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-620
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2024-2024 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 620 BP; 254 A; 97 C; 71 G; 198 T; 0 other;
     gggaacggat ttaaatgctc taaaaaacaa gaaaaatgcc ttaaaaaaat acgatttaac        60
     gtcaaaaaat gcactaaaaa aatgccctaa aaaactttaa aaatgtattt atattcaata       120
     aaaacacaat tttgaattta aaacttataa aaaaaacaca ttattatgaa aaatctgata       180
     aaaaatattt aaatacaata aaaccttaat taattaactc tcaattatct tctgtccatc       240
     ttctttttac cctaaaaaat taataggtat acaatttaga taggtatatt cgttatactt       300
     ttaccttttg tttcatagca ctgtataatc aggtgctgct taatattctc aaacagaaat       360
     cttcgacggt tatcggccag tgttgttttg tatctcgaga aacttcgttc cacgtcaact       420
     gacgtcatag gtgcaaactt catacgaaaa aatgttgaaa aaatgactta aaaaccataa       480
     aaatgcacta aaaatgtcaa aaaatgcaaa ataaaagtta cattttttaa ttccttgatg       540
     tatgaaatga actttttgct tggaaaccaa tgttttcgga cattcagaaa aaaatgcaat       600
     ttgcattcaa atccgttccc                                                   620
//
ID   DNA8-89_AP  repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-89_AP.
XX
NM   DNA8-89_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-375
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2025-2025 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 375 BP; 120 A; 72 C; 60 G; 123 T; 0 other;
     cataggcgca atttgggtta aatttatggg ggtgctagat ttatgtcgac taaagtgatc        60
     agtgggggct ttgccccccg ccccccccct ccattcatac aacttaattt tatacacctt       120
     cgcattaatc ttaatataaa caattaccta taacataata cacttttatc tatattatta       180
     ttctgatagg tacctaatat tatgtattat tattattatg aaaatgataa ggtcttagaa       240
     ataaatgtat ccaaatacct atggcataat attatagtca ataaaaattc gatgatgcta       300
     tcaaaaattt gggggtgcta atatgaattt tgggggtgct aagcaccccc aagcaccccc       360
     caaattgcgc ctatg                                                        375
//
ID   DNA8-8_AP   repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-8_AP.
XX
NM   DNA8-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-311
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1750-1750 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 311 BP; 98 A; 70 C; 53 G; 90 T; 0 other;
     caggggcgga ctggcccagg gtgctataca ccaagtagca ccccgggccc ccgtttgtat        60
     ttatgatccg ggcccccgat taccacagtc ggtatacggt ataatactgg tataatacgg       120
     tattatacaa aataaaaata aaataacata tttcaacatc tctacaaata aacaacatgt       180
     tattcttaat ttttttttta tatttactta taaaactaag ggctctttcc taatttaggt       240
     aggtttgaaa aaaaattacg ggcccctaat taattttgca ccccgggcca aaaatagcca       300
     gtccgcccct g                                                            311
//
ID   DNA8-8_BTa  repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-282
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 883-883 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 282 BP; 104 A; 42 C; 47 G; 89 T; 0 other;
     cagggtggca tgaaacgtaa gaaagaaatg aaagattgga aatttcagtg aaatatttca        60
     tgaaatttca cgaggctgtg aaatatttca tatttttcag gggctagagt atgcaacccg       120
     cactcaaaca cacaaaaata gaagaaagtc acaattttta cattttgcga aacatgaaaa       180
     ggaaccggta tttttcaata tctttcataa atttctgaaa tttcatgaaa tatttcacgt       240
     gaaatttcaa gattttattt ttcatgaaat tttgccaccc tg                          282
//
ID   DNA8-8_CQ   repbase;    DNA;    INV; 1915 BP.
XX
AC   .
XX
DT   24-DEC-2010 (Rel. 16.01, Created)
DT   24-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   DNA transposon from Culex quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1915
RA   Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 85-85 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 8 bp TSD. Putative hAT element.
XX
SQ   Sequence 1915 BP; 598 A; 351 C; 375 G; 591 T; 0 other;
     gggtggtcca aatccggact tttttggggc taccccctga aatcaaagat tgacccatca        60
     ctaggctaaa ttccaaattt gagctcattc tgaccacggg aacccctccc tccaatcgct       120
     taaagtttgt atgggaaaaa tcgtcaaaat gtatggagaa aagcaactgt tttacttttt       180
     tacctgtgga aggcgccata attatccgat tcttaccatt tctcaaatgt agaaccttca       240
     ttaaatttag aacaactttc ccgaagacac catattttta ggattttttc ccgcgaagtt       300
     attagcgccc aaaactgacc ctttttgcgc ggccagctgt aaggggctac ctaacaacga       360
     tgtttatttc caattcgtac acgcacgtgc tctctctcag gttcaaactc tctcacgagc       420
     ttgctcgcct gcctgcctgc ctgtttgcct taccaacaag cgcgcgctgt ttctctgctt       480
     ggacttttgt cgtcgtcgtc gttttcgttt gctatccgct gcgctgcgtt cctggcatgt       540
     ttattataat tttgaactaa aataccaggt ttgttttgag atataaaatt taatgtaata       600
     tgtgatcaac aaaagatatc atattataag agcgtgtgag agagaataca aatttgatga       660
     attagttcat ccatgaatcg tcatctgttc tgatccaaac ctaattgcaa acgttttgga       720
     ttttaattta tctgcttttg ttacaagaaa taccatgcag ttttttttag ataaaaaagg       780
     aaggaatttt ctttagattt tttttaaact gaatccaaat gagtatctta aaggaaggcc       840
     gcaactgcaa gatctgaagg tagttaacga ttgtgcagaa agagatgttt cctgaatcga       900
     aaaatttaca ggtaaactga caaaaaatga taaacagttg caatatttgt tgcaggtggt       960
     ctaggaacac agaaagaaat ttccagaaag aataaaaaaa taattttaga gagtatgaat      1020
     gaaaatttgc agcaataatt gtaaaattgc cttgatttgt tctgatttgt actaaagtat      1080
     atttttgtta aagcaaacta cctaaaggaa caacatttgt attacctgaa gatttttttt      1140
     aaataattga atcattatca tgtttcttta gcatatacga aaaactgcgt gtaatgcttg      1200
     gaaaaacaaa caaaccctgt tctcatgaca tttgctgtaa ttttttaatc gagcctaagc      1260
     tgtcttttct ttaaactatt tttttcagcg cagttttttt tatttttgac ataatttaag      1320
     aatttatatg ctaaatatat ctcaaaacaa tcctgctatt ttagttgaaa attataataa      1380
     acatgccaga aacgcagcgc agcggatagc aaacgaaaac gacgacgacg acaaaagtcc      1440
     aagcagagaa acagcgcgcg cttgtaggta aacaggcagg caggcaggcg agcaagctcg      1500
     tgagagagtt tgaacctgag agagagcacg tgcgtgtacg aattggaaat aaacatcgtt      1560
     gttaggtagc cccttacagc tggccgcgca aaaagggtca gttttgggcg ctaataactt      1620
     cgcgggaaaa aatcctaaaa atatggtgtc ttcgggaaag ttgttctaaa tttaatgaag      1680
     gttctacatt tgagaaatgg taagaatcgg ataattatgg cgccttccac aggtaaaaaa      1740
     gtaaaacagt tgcttttctc catacatttt gacgattttt cccatacaaa ctttaagcga      1800
     ttggagggag gggttcccgt ggtcagaatg agctcaaatt tggaatttag cctagtgatg      1860
     ggtcaatctt tgatttcagg gggtagcccc aaaaaagtcc ggatttggac caccc           1915
//
ID   DNA8-8_LMi  repbase;    DNA;    INV; 1110 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1110
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2898-2898 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1110 BP; 340 A; 219 C; 200 G; 351 T; 0 other;
     caagccccta ccacgccgta gcggagaagc gaggcaactg tccccgaatt gaagcggctg        60
     accgccgcca tttgcaggga agaatcctag tactggggtt gtgatttcaa gtgtatgaga       120
     cgcaacagga gcaaaatgaa gcacaaaata aacgcatgtt tgtttaaaaa attactgagt       180
     actgcagtct gtttaaaaag tattcttaaa tgaatgaagt ttcccaattt ccgaaatacg       240
     tctgcataga gacacgaagt ttaaggatgt aaggctcttt tctgagaagg tggagcgatt       300
     ttgcatcgag atatttgcat aagatgattc catgaaactt gtaaagtagc agagagtgcg       360
     attattattt aatccacgta attttctgtc aggccctgtt tactttttgc cgactactct       420
     gtacgttttg cacgcttatt tttgcatagc acagttttgt ctacattcct ttccatatta       480
     catagaattt ttctttcaac ttcctcgaat ttgggtatga ataattgtaa taacccatac       540
     aactttaaat aggcatttca ttcgcacatt actttttaac agagatagta cctctcaaag       600
     tggctgagta tgcaacattc gatcaaatat ttggccattt acgaagtaca atcaccacct       660
     gttaagtgtc taaaagcaat tattcgacct acttctgcat catacttata tgtgataaat       720
     acctcttata cgcctagttc ttcattcagc tcaaattagt atttttagta atttatatgc       780
     aaataaaata taagtacttg acatgcaaca aagtactttt atcagttcta gagaatcatt       840
     tgtaagagga aacctaaaca aaaacaaacg ctcatgattt attatttctc cacgaaaata       900
     ctatacggta tacaagtaat gactgatctg tgaaatgtaa cactgtttcc gacttcgtct       960
     ttgctaccat tcttactgtt acaattaaaa gcagcacacg aaccatgttt acgcactgtt      1020
     tccctgcaaa tggcggcttc tgtcacgttc aatgtgggga cgcgacacta gcgccagcga      1080
     gcggtctagt ttttatttag taagtctatg                                       1110
//
ID   DNA8-90_AP  repbase;    DNA;    INV; 821 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-90_AP.
XX
NM   DNA8-90_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-821
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2026-2026 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 821 BP; 237 A; 118 C; 147 G; 315 T; 4 other;
     gggctcggat gttgttgcat ttgcaacttt ttttctattg ttcggattcg ttgctaagta        60
     ggttntaaat ncgtttcana caagtacgaa ttaanatcta aaaattttaa gtgcaacttt       120
     ttgcgatttt tgaccttttt caattttatt gcaattttgt cgattttcgt cattttcaat       180
     acaattttat gtattttttt gtgttttcac ttttttttgt tagattatac aggaataatc       240
     tatggttatg tcgggctttg ttggttgtga ctcgtgacgg cttatttgac cgtcgtcgtc       300
     ggcggtaact ggaaaaacca tttaattagt agagcgcggt cattacgcta taatatgact       360
     acgggaagta tttttaggct tgcagtcaat aacaagataa gaataacgac gacttgattg       420
     ttatacaata ataaaatgtt gggagaaatg catgtttcaa tttataatag ttcagtatcg       480
     cactgtattt cgttaacact gcatttcgtt aacactgcac agtgcacact attttgtatt       540
     tttttttctt atttgttctt caaaatgccg aaaagtaagc catcgatgaa gaacgtatta       600
     aacaaatatg tcgatgagtt tggggaaaac atattttcga gtgacggttc agttttattt       660
     tgcaagttat gtgaaactcg agtatctgct gaaagaagat acatagttac acaacaaaaa       720
     aatatttttt tattgcaatt tttaagtgca attttgggtt tttttcacag caataatgca       780
     atcaatttta taacattttt agtgcaacaa catccgagcc c                           821
//
ID   DNA8-91B_AP repbase;    DNA;    INV; 864 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-91B_AP.
XX
NM   DNA8-91B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-864
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2027-2027 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 864 BP; 290 A; 106 C; 117 G; 347 T; 4 other;
     cagtcttgtt aagtattcga atactttttt tgtatttcaa atacttttca aatacttttt        60
     gaccaatgta ttttaaatac ttaaaaaata ctttttattt gtatttttat tctagaatac       120
     taaatacttt ttttcattct cgtggtctac tccaaattcc aattaccaat atttcggaat       180
     gtactatttt aaattttgtt tctaaaatat tattttaxaa tggttctaac ttctgataat       240
     ttataaaata aggtttcgcc aaaatacaag cagataacag aatgactgaa cactgaaacc       300
     cccgtcggct cctcactccc atattatacc atggcataca agtacgagac actgaccacc       360
     actggttgga ttggcattta tcttgaatct ttaaatagtc tttcttctta tttaatgggt       420
     ggtactgtgg tagtagttta taatttgaat ataagatttt ggtattaata ttattgaact       480
     tttttttttt gtcatattta ttttaatttg tacaatctgt ataaaatatt tttacaataa       540
     gcacaataga tggagggata cataagaggg tttggttggc ttgattaaag aaactattca       600
     ataatagtag tacttcatgg cgtgggtagt axtggttagt cgacttgtta ttgaatttat       660
     tgaatatttx aatataaatt atttattaat tgaactaaaa aaaaagtatt tgtgxaagta       720
     ttttgaatac ttttaaaaag tatttgtatt tatatttaaa tacttttaaa aggaagtatt       780
     cgaatacgta tttcaaatac aattgacacc aagtatttaa atacgtattc tgaatacatt       840
     tgaaaagtat tcttaacaag actg                                              864
//
ID   DNA8-91_AP  repbase;    DNA;    INV; 687 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-91_AP.
XX
NM   DNA8-91_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-687
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2028-2028 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 687 BP; 260 A; 81 C; 65 G; 274 T; 7 other;
     cagtcttgtt aagtattcga atacttgtat tcgaatactt tttttgtatt tcaaatactt        60
     tttaaatact ttttgaccaa tgtattttaa atacttaaaa aatacttttt atttgtattt       120
     xtattctaga atactaaata cttttttxca ttcttatgtt ctactccaaa ttccaatttc       180
     ataatttgtc gtcataatac tccattgcct agcagtgctc ctattgaacg ggtatttagt       240
     attagtaatg ccatactaac aaaacgtcga ggaaagatgg acgataacac attxgaxaaa       300
     acaatttttt txaaatacaa ttcaaatata atgcaattca tatctattaa aatatacaat       360
     ctgtctacta ttatattata atatttgtgt gctttattat tataattatt tattatatat       420
     attaataggt atataaattg ctgaatttta acattccata attaggtaag taxtaactaa       480
     acaaaactaa atatttcaat ataaaattta taaataacta aaaaaaaagt atttgttgaa       540
     gtattttgaa tacttttaaa aagtatttgt atttatattt aaatactttt aaaagaaagt       600
     attcgaatac gtatttcaaa tacaaxtgac accaagtatt taaatacgta ttctgaatac       660
     atttgaaaag tattcttaac aagactg                                           687
//
ID   DNA8-92_AP  repbase;    DNA;    INV; 600 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-92_AP.
XX
NM   DNA8-92_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-600
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2029-2029 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 600 BP; 166 A; 92 C; 117 G; 225 T; 0 other;
     cagtggttga tttggggggg gggcgcaggg ggacggagtc ccccttcttt ttaaattttt        60
     ttttagcgta ccccttctat ttatttgaaa cggaacgctg ggaacccaac ataagctagt       120
     gaatttgtaa atcgtgattt cctgatgcca aatttactta ataggtacac aatattttat       180
     attgttatta tattttatta tagcctgtaa gttgaattaa tattataaat tacaacaaaa       240
     taactaaaat cgttattttt atttttattc gtttctattg tgataactga taaacaaagc       300
     gttagaaatt aaaatcccat ttttagcggt ttttttgtaa tttgtcggtg gtttttcccg       360
     tggcattaaa taactattga gaaaatcgaa aaatgacccc cctataaaaa gtgtttttct       420
     ttctatatgt atttttcgaa taaatttgat attgttttgg tgtgataggt tgatgggtgg       480
     agagggaggt gtggagggct ttgccctcca cggcaatgtg acgattaatt ttgtgtggaa       540
     cgctcgttta tccaacatca gcagagtccc ccttcttttt tatttccaaa tcaaccactg       600
//
ID   DNA8-93_AP  repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-93_AP.
XX
NM   DNA8-93_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-478
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2030-2030 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 478 BP; 194 A; 59 C; 51 G; 174 T; 0 other;
     cagacttggg taaaatactt ttaaaaagta tttcaaatac atattccgaa tacttaaaaa        60
     aaaagtattc agaatatgta ttcgaatact ttatgataat aatattccta agtatttgga       120
     atacttcaca aaaagtattc caaatatttt tcgaatactt ttttttagta gatttagatt       180
     tcaatagcaa aaatattact ttttcaattc tgtgtttata aatgaacatt attataatct       240
     tgataaaaca cacctatctg gctatctata atctattagt tataaaatat tatattaaaa       300
     ttaatattgg atgttaaaaa agtattccga atactgtact cagaatactt gtaaaaagta       360
     ttcaaaatac cgtattgaat actttcaaaa aaaagtattt aaaaagtatt cggaatactt       420
     aaaaagtatt tcgaatacag tattccgaat actgtattcg gaatactacc caagtctg         478
//
ID   DNA8-94_AP  repbase;    DNA;    INV; 419 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-94_AP.
XX
NM   DNA8-94_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-419
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2031-2031 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 419 BP; 170 A; 43 C; 49 G; 157 T; 0 other;
     cagtgttgag ccgagataaa ttataataat tttatctaga taaagataaa gataactaaa        60
     ttatttattt atctagataa agatgaaaaa aatttttttt atctagataa attatcggat       120
     aaattttttt atattggttt atggcactct ccgtaagctc gtagcaatat agaataactt       180
     aatagtatgt tatcgaaaat gtcgatagtt attagtaaat actacctact taataaatta       240
     cttaattgtc tacctataaa ttataataaa taaaagccgt ttaataaatt aaattatctg       300
     gataaattca tctagataac ggtgattttt atcttagata actgtgtaaa ttaatattct       360
     ctatttatct agataagata aaagataaaa gaatatttat ctagataaac tcaacactg        419
//
ID   DNA8-95_AP  repbase;    DNA;    INV; 968 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-95_AP.
XX
NM   DNA8-95_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-968
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2032-2032 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD. Putative hAT element.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 968 BP; 343 A; 121 C; 131 G; 373 T; 0 other;
     cagggctgtg aatttaatgc atttgcatgt tttttttttg ctacactgta taataaaatg        60
     gattcggcca aaatttgttt tgacttattt atagttcaaa taccaaatct tattttgcat       120
     atttttgcat atttcatggg ttagggcata taaatgcatg ttttaatgat ttttttgtat       180
     aaatgctttt ttttcgtaat atttacattt tttcggtcaa tctgttctaa attgacatta       240
     aaatattaaa tgtatttgta taaactatga cttgtatagt ttcatggaaa ctattctatt       300
     tttactcggg tatttaacgt gtattattga cttttgtact attgaagtcg agattaaaca       360
     gttctcaaca aaaacaaaag atttcaaatt atgtgtatta tttcaaaaat attaactggc       420
     gaaaaaaaga acgtaggttt ggatatacct accagaagat ttaaccagta gcgacatgac       480
     gtacctattt caagtttgcc ccaataactt cgtcagatgt agaacgctcc ttttctttat       540
     ataaaacttt gttggcacca aacaggaggt ctttcaagtt tgaaaatcta aagaaattat       600
     tgattgtaca atacaataac tactttaaag gtaaaatata taattttaag tagaaacata       660
     agctattcta agcatatttc ttttataaat cttgtatacg acgaagatca agactagtca       720
     agcccaaaaa gtcatatact catatcagtc atatcaataa ataacaatac taatatttaa       780
     actaaaacta ataaaaaatt ataatgaaaa aaataaaaat agaagttaca tttttgtggt       840
     tttttttgca tatttttgaa aaattagagc atattttaag aatttttaga gcatattttg       900
     tcagttttta gtgcatttat atgcatgcat atttaatagt ttttaagtgc attaaattca       960
     tagccttg                                                                968
//
ID   DNA8-96_AP  repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-96_AP.
XX
NM   DNA8-96_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-662
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2033-2033 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 662 BP; 185 A; 92 C; 97 G; 287 T; 1 other;
     actagggccc ggaacttgat gcatttgcat ctttttttct aatgcttaca ttcgaggctc        60
     gtctttacag aaatttgatt catggaatat agaatttaat ggtacaattt ttattttgca       120
     ttttttgcat ttttagggaa tttattgctt tacggtcatt ttttagtatt tttggtgcat       180
     tttattcatt tttgtacttt ttttttacat ttatttgcat ttttcttgtt gaaagttaca       240
     ctttatcgta acacattcag tttccattag cttgtcgatt atcgacgttc attatcttta       300
     tcgtttgttg tcgcaatcta cgattattta ataaactgta ggccgatact attttaggcc       360
     cggtcaatca gaaaaaattt cccaaaagtc gatcgantta tttcaaactt caaaaaaata       420
     tttttgaagg ctccttcgag agtaaatttt taaagagcta gaacctataa taaatacgat       480
     ttatgaccca tgaattgtat aaaacgtaat ttttgtaaaa cttaaatttt taaaaatgtc       540
     aagtcattat aaagtaattt ttggtatttc tgtggtcatt ttttgatgtt tataagtcat       600
     tttaacattt ttttttgtgc attttttaaa gatttttagg tcatcaagtt ccgggcccta       660
     gt                                                                      662
//
ID   DNA8-97_AP  repbase;    DNA;    INV; 698 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-97_AP.
XX
NM   DNA8-97_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-698
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2034-2034 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 698 BP; 205 A; 75 C; 94 G; 324 T; 0 other;
     actagggcta ggattttgta gcatttgcat tttctttcat agtactacag gacatagcta        60
     atcaaaaaca aaattcgatt cattcatcac agagttcaaa tatgcaattt tgattttgct       120
     ttttttgcat tttcttatga tattcgtaaa taaatgcttt tttggtactt ttttgtcagt       180
     ttattagctt tttaattagt ttttgttaat tatacgcata tttaacattt ttagaacatt       240
     tacgtacata tttatctaaa ttattattta ttaatttatt ttaattgtat tattatatat       300
     acttatttcg tgatttcgta gtgaaatatt atcgccttat cggaaaatat ttctgaaaat       360
     agattcttag attttgtcaa agtgattacc gagtggggag tagtggttac gtaatacgtt       420
     gacatttatc gacatttaat aaaacggttt ttaatttatt tttttcaata tttataaatt       480
     gtgcttagtt gttctaagaa ttacttagtg tgaacatata aaaatgtgtt taataaatta       540
     ttttttgata ttaaaaatat ttttcagcta aacttaaaaa tgttcaagtc ttttttagtt       600
     gcattttctt ggttaaaatg cttttttttg tagcattatt ggcaattttt taattccttt       660
     gttgtaggtt tttagtgctt tattttccta gccctagt                               698
//
ID   DNA8-98_AP  repbase;    DNA;    INV; 796 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-98_AP.
XX
NM   DNA8-98_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-796
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2035-2035 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 796 BP; 267 A; 96 C; 107 G; 326 T; 0 other;
     gagctcggat ttatatgcat ttgcatgttt ttactaagtg tatgcacgtc tagggggttc        60
     taaaatgtcc acggttcatc tcacactgaa tttaaacacc aaattttata ttgcatattt       120
     tgcatattta gaggattatt gcatattggt tcataaatgc atataacatg catatttaat       180
     gggtttttaa taaattgcct attttattta agataaatat attttagtta ttttaaaaga       240
     gaaaaaaatc gttgacaggg tctcttacaa gaatattctt aaaatattgt catttttgca       300
     acacttcatg agatcggagc acgtatagat aatattaaat tatattaaca acaataattc       360
     acatacaccc gcatttcgac atactatgtt gttacttcga cgtgcgcaac gaataaggca       420
     gtaactcaat tttacaattt ttttttataa cgaataatat ttatagatga ttttattatt       480
     tttattattt ttttttaagt tttctgagtg ttgtagacat tgtattttaa acaatttaaa       540
     atatgaaaaa atgaagatta taaaatattg cattttggtt tttaaagtat taaatgttta       600
     actatttaaa tattcttttg tttatgatag aatatctagt aggtactact ttccttggtg       660
     taaaaatgtg ttttttttta aaaaaataac attttataat gtttaacata tggcatataa       720
     ttgcatattg agccactttt tccttgcata tttgcatcat atttgacact ttttaaatgc       780
     atataaatcc gggctc                                                       796
//
ID   DNA8-99_AP  repbase;    DNA;    INV; 758 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-99_AP.
XX
NM   DNA8-99_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-758
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2036-2036 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 758 BP; 321 A; 77 C; 65 G; 295 T; 0 other;
     cagtcttgta aaaaatactt ttgaaaaagt attaagatac taatactagt attcgaataa        60
     aaaagtatta aaaatacttt taaaatacta ttataaaaat gtattttacg aatactcaca       120
     aagtatttga atacaaatac aagtattttt tttaaatttt atgctatata atatatatat       180
     tatattgtac accagtatag gtacctatta tgttactact taccatagat tttaacaatt       240
     actattaaca tgtctgtcgt ctgactattt agagatatat acatgttcac atatttcatt       300
     ctgcattcag atatatttca actaatattg attaaatttt aacgaaaaaa ataaactaaa       360
     gagtggtatt aactattaat atggaactat tttaaaatta ttagattttc agttttctta       420
     aaaaattcca atatagaaac catataaaat ttgatgtggt attttttaaa ttttaaacat       480
     tgttattacc tacttttact atacaaaaac ataatattag ttttcaacga aaacaatatt       540
     atttttattg atgtaaattt tttgtgaaaa ataataaatt aaaattaata aaacggactt       600
     tatggtattt taatacaagt atttaaattt tgttaaaaat acttttaaaa agtattcaaa       660
     atacttaaaa aatacattaa aaaaattgta tttagaatac catataaata cttcaaaaaa       720
     gtattcaaat acttgtattc gaatacttta caagactg                               758
//
ID   DNA8-9_AP   repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-9_AP.
XX
NM   DNA8-9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-354
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1751-1751 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 354 BP; 111 A; 61 C; 65 G; 116 T; 1 other;
     cacgattaaa gatagtatgg ttgcacaacg aaccataata aagtgatgct ccgagtttcc        60
     ttgttatcac aacgattagc ggaaccgagc attggcgctc caagcgttta aatattgaat       120
     catatatata aatcatataa tttgtatgcc tagtagtggc tagtacttaa tttttacgct       180
     atcagcgcta gtaaaagctt ctagngtatg cctagtagtg gctagtactt aatttttacg       240
     ctatcagcgc tagtaaaagc ttctagagta tcgttgataa taaaagaaac tatgagcatc       300
     attaaattgt ttcttatcat agttcgttgg gcaaccatac tatctttaat cgtg             354
//
ID   DNA8-9_BTa  repbase;    DNA;    INV; 2079 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   29-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2079
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 884-884 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2079 BP; 664 A; 390 C; 385 G; 640 T; 0 other;
     ggtttcagga cattccgtca acgatttttt gtccgggcac ctgtttagtc cagtaattta        60
     cgtccacgcg taaaataaga aacagtgact tggtccaaag gttatatttc agtccgtatg       120
     taaaattata ttgacaatat cgaattagaa aattgagaga gaagaaggtg ttgttatggt       180
     aactcatttt ttaaatgaaa tgttactttc ttcttttgat tcatctttca aattttcatt       240
     ggtgaatatt tggttttatt tctatctata aaattgtcga tttaaaatat accgtatata       300
     tatacctttt tttaaatgat aatattactt cattttaaaa acattatatt tttaaaacgt       360
     ggcaaatatt tgtaaaacct tttccaagcg atggcatcga tattaatctc aatgagccgt       420
     acttgtgttg aaaggaacta tacaaaaatg aaaaagagag aaaaaaccaa ggaggacgca       480
     atctttggtt ttaacccact tttacatcga tcttttacag tcaaacacgt ccaattttga       540
     gcgtttggtt gcgaatacac cacgctgcag cacagtaaaa gcacaaaata taaaggaaaa       600
     attaaaaagc tttggaaatc attaaattag acacggaacc accttaatat tttcaaaaca       660
     cacgttatat tttcctttaa tacatatttt tttcatcaat ttaaatgaga ataatccgtg       720
     cagagcgtgc aaacatttca aaatcatgag ttgaaaaacg ctgactccgc gagtttaaat       780
     attagagcct aacacagagc ggagcggcga cgcactggcg cctacaaacc taacgggata       840
     cttcacgcgt tgcgcaatgc gtgaagtatc cctgttaggt ttgtaggcgc ctatgcgcgt       900
     gtcacgctgg tcgcccgccg cgccgcggag tgctacggcg tttcaagcaa ctatttcgcg       960
     acataggtgt tgcacagtat catacgagat tgaaggcgct ccaacgtatc aagaatgaca      1020
     agcttccttt aagggtacgg agctttcctt gcaaaataaa tcaagatact acgtcacaaa      1080
     aagagagcgg taatctaaaa aactcactta gtcctagcat ccgtatttaa taacgtttag      1140
     cataattttt gaatttcatt agagaaaaat gtgactcgat ttaggcagaa acattcttga      1200
     gtatgccgtc aagaagattt tattttgaat caagaataaa atagctgaat gaaagcgggt      1260
     ttctgcttga tctaagtgac ttttcttttt atttaagcat cctttcttct ctaaacaggc      1320
     attattttct ttattgattt ataaggaaat cttctcggcg gtaaatttga gcatatttct      1380
     gcttgaatca agtcactttt tcctctaatt aagttcaaaa atcatgctaa acgttactgg      1440
     atccagatac taggacttag caagtttttc gactacagct ctcttttttt cgtcgtcact      1500
     cgatttaatt tgcgagggaa cttcgtgctt ttgaaagatg ccatcaatca tgatacgttg      1560
     gggtgccttc aatcttgtat gatactgtgc aacacctcca tggcgaaata gtagttcgaa      1620
     gcgccgcggc acgccggcgc cgtcgcgaag ttatcgtaca caggaaaaat ctaagagcct      1680
     ttagctgagg aaaatcaaaa ggttcatccg gttcaggtgt aagaagatgg gattttcttg      1740
     aaagataatt aagtcctgtt gcaccaaaga ggtgtagaga gttttagtga attttccctc      1800
     atggaattga cgccaaaatt ctcaattata tatttgtttc cgtttggcca accaaacaaa      1860
     caaaaaacga gcaaaccctc attcttccaa gacattatac atttcatcca aaaacgtcgt      1920
     gagcaaatgt tgtttgtatt tacatgttga ccaattaact ttgggtctca ataattggta      1980
     agtggaccaa aactcccctg ccgaaaaaac gcgtggactt aaactactgg aaaaaacaag      2040
     tgctcggaca aaaaatcgtt gacgaaatgt cctataacc                             2079
//
ID   DNA8-9_CQ   repbase;    DNA;    INV; 882 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   27-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-882
RA   Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 86-86 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. 8 bpp TSD. Putative hAT element.
XX
SQ   Sequence 882 BP; 326 A; 136 C; 140 G; 278 T; 2 other;
     tagaggtggg caaaaaaaga gcgagccgct caaagagccg gttcactgaa aagagcgaac        60
     gaaccgtggc tcncaaaaaa agaaccgcgg ttctttttta aacttcggtc ttttggaaga       120
     accgtttcaa gatggcatga tttttgttat aaatataatt tattgaattt ccaaaaaaat       180
     gtagtactaa atttgttttt gagaattgaa aatgcaattt caaatatttc aatgcttata       240
     aaaattaatc ccaaaagtaa atgattttct aaacgaactg aaaaaaactt ttcattgtac       300
     aactgattgt atattaaagt attaccggaa tacaaatttg agcatttcaa attgcataag       360
     ttgtaaaata ttaccaaaaa tctactgaat agtttagaga ttttggaaaa aaaatccttt       420
     tgtccgatta aactttagcg tttatagact ttatcgatta aatcagaatg tagaaaagag       480
     ntcacagaat attttctcca aataaaatat cagcattagt tcaattcttg cagaaataaa       540
     cgcaatttta aaattaatag cagtttttcc agcttcccta gatttaagtt tggatgccaa       600
     tcaattactc gaatgtttag gttcgagtag aaatcttgac atagagaccg ccaagaccta       660
     tggttttcaa gggcatcttc tcgttttcag ttttaatttt ttttatcaaa taatttataa       720
     aagtccaatg tgaaataact tataaaatca cacgattctt aaaaaaaacc ttttcatcca       780
     aattttgaaa aagagcgaaa gagccgttca aaagagcggc tctttttaat gagcgaacga       840
     aaatgagcgg ctcctaaaaa agagcggttt tgcccacctc ta                          882
//
ID   DNA8-9_LMi  repbase;    DNA;    INV; 1383 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA8-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1383
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2899-2899 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1383 BP; 417 A; 251 C; 234 G; 481 T; 0 other;
     tagagttggg caacacgatt cttttttagg aatcgattct tgcgattcaa tcccacattg        60
     tgaatcgatt cctacgattc gttcacgatt ctttcgcgat tctttagtct gcattggcgc       120
     gattcttact tctacatctt gctcatagat ggcaatacat gtctgtgtca tggatgttgg       180
     aatcttaacc ttttgcatct gttcctacga ttcgttcacg attctttctg gtctgcgacg       240
     gcacgattct tacaaaatgc cgaaaaggtg acaatatggg tatcggattt tttaatattt       300
     atggtgcgta aagttcagac ttaaaataat aatgaggcaa agccattcga ttcagctctc       360
     aaaaattctc gagaaaatag tctgaagttt tgcgagcggt tataaataca tattacacta       420
     ccaactattt ctgctgtcat catagctcat ttagtagcgt tgtaggttta gtgaacgtag       480
     gtcacttatt tcgaatcctg ctgtaacctt ataaattttt ttcgttctgt ttgaatactt       540
     cggccattta aatataaatt taattaaatc tatggtaatt aacagatatc taatcattat       600
     aaaatactta ttatgtaaaa tcaattagtt taaggaaaca cgtctatata aataaacatt       660
     aaaaataaaa atccgtctct aaatattaaa tttctttcga gatgcaagaa attcgcgttt       720
     attaaaatgt ttcttttttg taaaatcggt ttctttcagg aaagctgata acgtaaaaac       780
     caaaatggta aaaaagattt ttgagatggc tttaaaaaca tttaaaatcg cgtttttata       840
     taaaaagaat atttttgtaa aattgagttt ttacaaaaac tacaactacg tagatgaact       900
     cgaaaagctt aaacctctct aaacacaaaa tataatccaa atcgttacag ccatttccgg       960
     gatacgcgaa atataaatgt gtaaggattg ctcgtttaaa tacataatat gtaaactgta      1020
     taaaagacgt atattcgtat gtattggcag ctgtgtattt cgctgcgttt tgtttctgtc      1080
     atctgtaatt cgtgaatagg ctaataatta acggctcacg atcttcgttc tgtgcttcct      1140
     ttgttcacac gctttctggc tttcgtaatt attcggcacg attcgccact tgctttcgaa      1200
     tcatgaatcg ttggatcttg gaatcgtcac gagacaggcg attcttttga acgacgattc      1260
     gtcccccccc ggcatcggca gattcggcag tcgccttcga atctggatca cgattcgatt      1320
     cttacgattc tttatttgta ttcgttcaaa tgaacgactc attgacgaat cgccacaact      1380
     cta                                                                    1383
//
ID   DNA9-1_BTa  repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-171
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 885-885 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 9-bp long.
XX
SQ   Sequence 171 BP; 44 A; 41 C; 48 G; 38 T; 0 other;
     caaggcggat aaagaaaggt ggtcgcattt cgagttgagc cgccatttta aaggctgtga        60
     cgcgcagagg gtacatgctt tgccatgcaa tcaggatgta cccgaaacgt acccgatgcc       120
     gtgtgacgtc aagagggtac gaaatgcgac caccattctt tatccgcctt g                171
//
ID   DNA9-1_LMi  repbase;    DNA;    INV; 983 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.12, Created)
DT   28-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-983
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3225-3225 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 983 BP; 303 A; 186 C; 202 G; 292 T; 0 other;
     gggtgattct atttacactt cggtaaaatc agacgtgacg tcattatgac gtatccacac        60
     tatcgaagac gactggagcc atgatcgact tgtgtggtcg ttctagacgc aaaactgcgg       120
     ttgcaattgt agcagacgaa ttaaaggagt agctgataat atcttcagtt ggtaatggta       180
     tattcattac agtttcggaa gctataactt tgctttcttt ttttgaaagt aagaagctat       240
     aaactttccg aaaaaggacc tacactgtga gctctgaaac gttattcagc caaatctgat       300
     gttgtcatcg tggcccattt gtgaaggttg tgtttaaaac taatggaaac tttttctcta       360
     agcgaaaaat gctaccgagt tgcattgtag tacggagtct acgttaaact aagaggacaa       420
     aatacggtta ccaggctatg aagcgacaat gtgtacttgg acatgtcaaa atatgcgaca       480
     tacaaaaaca acatatagtc gccgtaggta tatgtatgtt ttcgccgaaa ctataaatca       540
     aatgagctgg atattaatac agtcatttgt tacagaggct ctgcgaacat caggtaaaac       600
     atttcgtaaa actgggtact catctaccgc caagttgctg caacatgcta gttcttttct       660
     ttgaaaatgt gtgaagttgt cgttctctaa ggctcggtct gcgttatttc tgacataatt       720
     ttcaatttac atttactgaa atttccgtca gtgctttcca aaacatgata ccaatattaa       780
     gtaaggccta gttttgtcac taaactacga aggaaaaaag tatgcagttc agaaagaatg       840
     tcgaattaag catgttgtcc cacccaaaac cagcgtctcg aacgatcgca aaagtcgatg       900
     cgccgctctt ctggacgtcg atagtgtgga tacgtcataa tgacgtcacg tctgatttta       960
     ccgaagtgta aatagaatca ccc                                               983
//
ID   DNA9-1_SIn  repbase;    DNA;    INV; 1740 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.02, Created)
DT   20-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon sequence - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1740
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 313-313 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. ~800-bp TIRs. 9-bp TSDs.
XX
SQ   Sequence 1740 BP; 606 A; 295 C; 276 G; 554 T; 9 other;
     gtgtgtgtga agctggcgta tcatttsgtg gaaactcacg aaacattgac agttctggst        60
     ttatttwcaa tagttctaca gttcctgata gataaaacaa atagttctgg cctttaaagc       120
     gaaaaaaacg cataggacaa agtgagacgc caggttcacg cagcgtctca gtttgtcctg       180
     cgtcattttc cagacccaat tcttgtagga ttttaaaaga tctatagttc tagatgagtt       240
     ctagaaagag ttctagcgtt taacatagtt tatttaattt ataaaaaaaa ttattataaa       300
     atawttattt tataatatta cataatagag ttccgtgtac aaaaaaatat ttttcctcca       360
     gttctgaacg tatctaagcg ccttccgaag agttccggtc gattccatta tttattaatt       420
     agaaaaaaat tattatcttc cgcgaaagac gtatattcgc gcatatgggt gagacgctgg       480
     tctatattcg agagttctgt gtaccaaaaa atatttttcc aatagttctt aacgtattaa       540
     agcgccttcc gaagagttcc ggtcgattcc gttattagtt aattaacaaa aaattattaa       600
     cttccgaaaa agccgatttt ccgcatatat gggtgagatg ctggtctttt tccgagagtt       660
     ctgtgtacga aaaaatattt ttcctatagt tctgaacgta tcaagcgcct tccgaagagt       720
     tccggtcgat tccgttattt attaattaat aaaaaattat tatcttccgc gaaagacgta       780
     tattcgtata tggtttaaca attctataaa tataacaaaa aaattataaa aaaaaaaaaa       840
     wtcccataaa aacaaaaaaa ggcaaaaaaa ggaaccataa tctcgtacgt ccacgtcatt       900
     ggttccggat tacgctgaga acgagaaaag ccagtgtcca tgtaacaata catttgtcag       960
     tatacatata acaataaatg cggctatatc aggaaataaa aattatttaa caaataatta      1020
     ataatgctgc cgaactctat gaaacattgt tatawaagtt cagacctaca ggaaaaatat      1080
     ttttttatgc acagaactct aaacaaccga tcagcgtctc acccatatac gcgaatatat      1140
     gtctttcaca aaagataata attttttttt aattaataaa taattgaatc gaccggaact      1200
     cttcggaagg cgctttaata cgttaagaac tattgaaaaa atattttttg gtacacagaa      1260
     ctctcgaata tacaccagcg tctacccata tgcgcgaata tacgwctttc gcggaagata      1320
     acaatttttt tctaattaat aaataattga atcgaccgga acttttcgga aggcgtttag      1380
     atacgttcag aactggagga aaaatatttt tttgtacacg gaactttatt atgtaatatt      1440
     ataaaataaa tattttataa ttttttttwa attaaataaa ctatgttaaa cgctagaact      1500
     ctttctagaa ctcatctaga actatagatc ttttaaaatc ttacaagaat tgkgtctgga      1560
     aaatgacgca ggacaaactg agacgctgcg tgaacctggc gtctcacttt gtcctatgcg      1620
     tttttttcgc tttaaaggcc agaactattt gttttatcta tcaggaacta ttgaaaataa      1680
     acccagaact gtcaatgttt agtgagtttc caccaaatga tatgccagct tcacacacac      1740
//
ID   DNA9-2_AAe  repbase;    DNA;    INV; 1443 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1443
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1283-1283 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 9-bp TSDs. Subterminal inverted
CC   repeats are 101 bp long.
XX
SQ   Sequence 1443 BP; 478 A; 256 C; 247 G; 462 T; 0 other;
     ggttgggtga caaaacgtcg aaagacaaaa tgtcgaatgc caaaacgtcg aatgccaaaa        60
     tgtcgaaagg acaaaacgtc gaagggacaa aacgtcgaaa ggacaaaacg tcgaaagaca       120
     aaacgtcgaa tgccaaaatg tcgaaagcta aaatgtcgga gggacaaaac gtcgaaagga       180
     caaaacgttg aataaacgtt gaatgccaca acgtcgaaaa gaacaaaagt acccgaatgt       240
     ctgacccgaa tgtcttcgaa attttcctaa atctcaggct acagattttt ttttccagtt       300
     cggttattca ctttttgaaa ctataatttg atggaagtct gttatggaaa aatagtaaaa       360
     agtaataatt ttttttaaga tttcttgaag acacctcaac cgatttgtat gatttattaa       420
     gagaagctct tggtattgta tagcccacat ttcatttttt tttatattga ctaaaacaaa       480
     atgtcgtcaa aagaaatttt atatagggaa tataaatccc ccggaaaaat cggatcagtg       540
     caaatacatt gttttccaaa gatatctacg ggataccata atttatagct ggtcttagaa       600
     aggaaagtaa aaaataaata gccaagtctt gtcagaattg ttttagtatt ttttttttat       660
     ttttgaaacg ataaaacaat tattggtgtc tctgattaaa gtgctcattt tgagattctc       720
     tatacaaaaa aaaaatcaat gcacagaagt catttcaaaa gttcatataa aaatgtgctg       780
     gatatcctga tgaaatatat ctatttccga aaagcaaatc aataaatcga ttcaattgta       840
     cttatccgac aaaagaatga gtattttttt gaagaataaa gaaatcacta aatgtcgaaa       900
     atccagtcaa tttgatgaaa ttaatgttac tgatttgttg aaagaagagc gagtcataag       960
     gtgcggcgaa agaaagctta tcatcttttt catcttcaat cggtcttatt ctttaacagg      1020
     cttgttttgt cttgtgtaat tgccttctca ttacctcagc aattaagtat agccataaga      1080
     atgtcacctt acctccttga acatatcttc attatcgaac atcatctcag gcctccattt      1140
     cagtttcctt ctcaaagtgc ttcactgctt cttttctcgc cagaaatgac atttttctga      1200
     aaaatttgtc ccacgattac tttgatgaaa attgtaaagt tttgctttct caggccgcgc      1260
     cgatcgcatc gcaaccattt tttccttaga aacgcttgcc aataacaatc gctagaaaaa      1320
     tgactgcttt cgacgttttg tcccttcgac gttttgtccc tttcgacgtt ttgggattcg      1380
     acgttttggc attcgacgtt ttgggtttcg acgttttgtc tttcgacatt ttgtccctaa      1440
     acc                                                                    1443
//
ID   DNA9-2_BTa  repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-296
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 886-886 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 9-bp long.
XX
SQ   Sequence 296 BP; 88 A; 49 C; 61 G; 98 T; 0 other;
     catagagaaa aaaaaggagg tgtttgcatt tcgggcatct tggatttttt tgatgacgta        60
     ggtcggtaca gcgactttta tcatcgattt tcttggaaat ggtgtaattt atggaaaaaa       120
     gtcattctat aaaaagtgct tgaaattata tcatgagttg atttaagcaa aaaaatggga       180
     cattatggtc cgtttttcat acttcgaatt ccggatttcg ctggccaggt tgtaccgacc       240
     tacgtcacag ggtaaacaaa cctcaagatg caaacacctc cttttttttc tctatg           296
//
ID   DNA9-2_LMi  repbase;    DNA;    INV; 1222 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.12, Created)
DT   10-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1222
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3196-3196 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 1222 BP; 342 A; 232 C; 268 G; 380 T; 0 other;
     caggggggtg taaatttgac tcgcgcgctt tgcttctgtg acgtcacctg gcagcaagcg        60
     ccgagcagtt gccgcagtac ccttatgaaa cgtgcaagca ggaagttgtg ttttgcgctc       120
     gctcgtttcg tgacctgtta agtgttcgga tagaaagtag ctttcttgta ttagggaaca       180
     atttttccat atattctttc tgtaattatg agagaacttc gtgttgtgct gttgcggagt       240
     gcaataacag tggacgcaag acggaaggca ttttgtacca tcggtttcca aaagatggga       300
     caggcatatg tctgaaacga tttgttccga acatttttgt gaagccgatt acaaaaaaat       360
     gctgttccat gaaaattaat cggctgctag tttgcgttgt aacgattttc tttatctaat       420
     atataaaaat gaaggcctct gtttgtccgt atgctatgcc tgtcaatgtc attcagtcga       480
     ttgcgataaa acttgtcaac ttattgcatg aactagcgtc acggttatag gcatagtaaa       540
     atttcgaaat tcgcactcta agggggtgaa atcatgatat tatataaaac agaagcacat       600
     tttctctctg tctgtccctt taaccttcta taactcgaga actactgaac gtatcgtgat       660
     gaggtttctt ttaaattgta ggtctcacaa aggtctaaaa aaaagtccgc gagagcatat       720
     gtctaacttt tacgagtgaa gcatatgtac catttttctc tcctaaggcg ctggcgccgg       780
     atggcttcag actacataaa tagtgattgt gggaaatcta taaaagttag acatgtgctc       840
     tcccggactt tattttagat ctttatgagc tctacaattt aaaaaaaacc tcatcacgat       900
     acgttcagtg gttctcgagt taaagacgtt taaatattac ccgtgccaag tcgcggggcg       960
     ggacgggtta gctagttgtt aataatgttt gaagcttttc tttttcagtc ctttgtatgt      1020
     tagtatacat atatattaat cacaagcgtg ttccaccgct taaaagcaat gttttttgtc      1080
     gaatgagaaa agaaaagacg gagaaaatgt gttcacggcg gccttataat acagcggctt      1140
     gctgccgagt gacgtaatac agcgctaacc aatgacagtg aagaagccca aactggcata      1200
     cctttctagt ctacgtacct tg                                               1222
//
ID   DNA9-2_PBa  repbase;    DNA;    INV; 1339 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   04-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1339
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 606-606 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 9-bp TSDs.
XX
SQ   Sequence 1339 BP; 417 A; 246 C; 249 G; 423 T; 4 other;
     gtgtgtgaag ttggcgtctc atttcgcgga aactcacaaa ttattgagag ttctgacttc        60
     ctttcgaata gttctagagt tcctgataaa ttaaacaaat agttctgctc attaaagcga       120
     aaaaatcggt tcggacaaag tgagacgcca ggttcacgcc gcgtctcact ttgtcctaaa       180
     taagttccga tgtccgccga tgcaagattt tgaaagattt atagttctac aagagttcta       240
     taaagagttc tgtcaaatta aagcaaaaaa attatttaaa cataaataca gagtaattat       300
     taatgtaata acagatcgag ctaaactaca aacaaacaac tcggagttct ggcttaaaaa       360
     ttatactttt cgtatagttc tcaacatgca gaagcatttt ctaaagagtt ccgggcaatt       420
     gcgataacgt acaattgtta aataaataaa tatcacccga gcgtcacgta cttagacaca       480
     taggtatgag acgctggccg ttatttcgga gttctggctt aaaaattata cttttcgtat       540
     agttctcaat atgaagaagc attttctaaa gagttccggg cgattgcgat aacgtacaat       600
     tgttaaataa ataaataccg tccgagcgtc acgtacttag acgcataggt atgagacgct       660
     ggccgctatt tcggagttct ggcttaccat actgtgtcca agtnnnngac gctcgggcga       720
     tatttattta tttaacaatc gtacgttatc gcaatcgccc ggaactcttt agaaaatgct       780
     tccgtatatt gagaactata cgaaaagtat aatttttaag ccagaactcc gaaatagcgg       840
     ccagcgtctc atacctatgt gtctaagtac gtgacgctcg ggtgatattt atttatttaa       900
     caattgtacg ttatcgcaat tgcccggaac tctttagaaa atgcttctgc atgttgagaa       960
     ctatacgaaa agtataattt ttaagccaga actccgagtt gtttgtttgt agtttagctc      1020
     gatctgttat tacattaata attactctgt atttatgttt aaataatttt ttttgcttta      1080
     atttgacaga actctttata gaactcttgt agaactataa atctttcaaa atcttgcatc      1140
     ggcggacatc ggaacttatt taggacaaag tgagacgcgg cgtgaacctg gcgtctcact      1200
     ttgtccgaac cgattttttt cgctttaatg agcagaacta tttgtttaat ttatcaggaa      1260
     ctctagaact attcgaaagg aagtcagaac tctcaataat ttgtgagttt ccgcgaaatg      1320
     agacgccaac ttcacacac                                                   1339
//
ID   DNA9-3_LMi  repbase;    DNA;    INV; 1429 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.12, Created)
DT   10-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1429
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3197-3197 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 1429 BP; 473 A; 224 C; 232 G; 500 T; 0 other;
     agtcctgtga agttggcacc ccttttttgg aaaatgtatt tttttcagag ttctagacag        60
     atatgcaata gttctggagt tctctgtaca aaatttaaat agttctgcag aatttcgccg       120
     aaaaaatata aaaattacca caaacttagt ttttttagtt ttttcaaaat aattatttgc       180
     ctattagcac aaacatagtt ctgatcacag ttctaaatag ctctcaaaga gttctacagg       240
     aaatcctaat gacatttttc tgtgcagatt atactttata gataaatgca ataatgtgga       300
     atccatttca cgctactgtg aatggcacca ttttttcgag aaatacacat tttttggggt       360
     tctgtgacat attatagttt agagtcattg aatattctat gtaattgccc gaaaaaaaat       420
     tatgttcaca attttaatat ctgataagct gtcttatttg tgccccttat tcgagaaata       480
     tacatttttc ttaggttgag atattctatc cgctgacatt caatttgttg tttttacgtc       540
     gagtgaactg cttatcgtaa acaagaacta ttgcaattcc ctagaactct gaaagagaac       600
     tgtgatcaga actatgtttg cgctaatagg caaataatta ttttgaaaaa actaaaaaac       660
     tcaagtttgt ggtaattttt actatttttt cggcgaaatt ctgcagaact atttaaattt       720
     tgtacagaga actccagaac tattgcatat ctgcctagaa ctctgaaaaa aattacattt       780
     ttgaaaaaag gggtgccaac ttcacaccgc aattttgtgt agtttatgtc cctcattcgc       840
     aattatctca tgaagtatat ctgcacagaa aaatgtcatt aggatttcct gtagaactct       900
     ttgagagcta tttagaactg tgatcagaac tatgtttgcg ctaataggca aataattatt       960
     tggaaaaaac taaaatttgt ggtaattttt tgtatttttt cggcgaaatt tgcagaacta      1020
     tttaaatttt gtacagagaa ctccagaact attgcatatc tgcctagaac tctgaaaaaa      1080
     atgcacattt ttgagaaaag gggtgccaac ttcacagtag cgtgtaaatg gattccccat      1140
     tattgcaatt atctcatgaa gtataatctg cacagaaaaa tgtcattagg atttcctgta      1200
     gaactctttg agagctattt agaactgtga tcagaactat gtttgtacaa ttaggcaaaa      1260
     aattattttg aaaaaactaa attttgtggt aatttttcgt attttttcgg cgaaattttg      1320
     cagaactatt taaattttgt acagagaact ccagaactat tgcatatctg tctagaactc      1380
     tgaaaaaaat gtacattttc caaaaaaggg gtgccaactt cacaggact                  1429
//
ID   DNA9-4B_LMi repbase;    DNA;    INV; 2126 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.12, Created)
DT   27-OCT-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-4B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2126
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3226-3226 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 2126 BP; 641 A; 423 C; 428 G; 630 T; 4 other;
     ggtgtcctga caaaagcacc cagtgacatt gccccgtgag cacccagttc tggtcgaggg        60
     gcggtccgct aatctccccg tccggtctct gcccggcagg tagaagagcc gagggctgtg       120
     aggtcgcatt gacacgggcc gtactttacg gcaatgcgtg gccgcaatag cattgctgca       180
     gtttataatg gaagcgagac taaagaagaa ccaagacata ttcataagat ttgtgacctg       240
     gaaaaagcct tcgataatgt aaggtgctgc atgatgttcg taattctgag aaaaatagga       300
     gtaagctgta aggcgggtat acattgtttg tataagaacc aagtggatac aataagcgtc       360
     gaaagtcaag aacaaagtgc tcagattaaa aagggtgtaa gaaaagttgt ggactgtcgc       420
     cattactgtt taacttgcgc aatgaagacg taatgtcgga aataaagaag aggttcaagg       480
     ctgtgataaa agttctgggt aaaaggatat caatgataag ttttgctgat gaatcccaaa       540
     tccttatctg caacaaaatt gttaaagctt ttatggatac tatttgactt actgcctgct       600
     ggcgtctgtc tccttttttt ttatgtcgac gttcgataat tagatgtttc gcccacacgg       660
     gcggctggca ttgccgaaat ttcatcttcc aacagcagtg gaatcgaaac ttcaacagtg       720
     ttaccacaat tagactctga tatcgtgctg tcgaaacttc agttaaaaca tcaaacaaac       780
     atcggccgaa aaattcgaga cagaagacaa gaaattttaa gtacctttaa cacacagatc       840
     tccatttctg ctacgtacat gtttttgtaa acgtcataga tgaatagtcc tattcgtttt       900
     aaaaatacac acatgattaa ataataaata atagaaacat aatgtttgtt taattcttct       960
     ccacatcgac ggctaagaaa acatgcaata cgtaagcaaa acgcaagtta tttcacacgt      1020
     aatcaacaca tcgatttaaa tcccaactca atcagcacaa tacgttgcga aacgtcattc      1080
     ccaacttcgc tttcattcaa atctgccatt tcgctgtgta ttcgtagcct agacaaagaa      1140
     catattgagg cacatatttc acgttttatt accaaattac aaacaccccg ccgctaacgt      1200
     catgtgtaag tcgggttgtg taaaaaaaca ggtaattatt tccakttcgt ttgtgtttca      1260
     aaatgtctct gacaacacac cttactttca gttattatga taccgamaaa taaaatcatt      1320
     tcagtgcgct twccataata tttctgaaaa gtatgaaaac atcgatattt acatagcgat      1380
     gttacttaac atcgatgttt gtccgtctga acatcgatgt atttcagaga gatgttgcat      1440
     ccttactgat gactcaaaaa aaagttttgt attgttttca cagatgattg gcttgtcctg      1500
     aaactgatca taaataaaaa tttgtgactg catcagagag accatgtgct gtctaccgac      1560
     tattcgtaat aaacctactc ccatcacact tttatccagg ctttggactg gctaaaaggc      1620
     agaggtaaat tgtcatttag acgtgtttaa aatcagttat tttattttat ttttatatac      1680
     gtttttattt tatttttatt ctttttttta attttatatt tattaacctt tttccatgtt      1740
     ctcttgtcta acaagacacc tatgaagtta cttcatagtg gccacatggc tttcccttgt      1800
     tggtcgttga tatctccata tcgaacctat aagctcacaa acacacaagc tgcaccaacc      1860
     gaacactacg atattcataa tcgtactgac agttagcagt catccgctga ggtggacaag      1920
     gaccttggga ctgcaggcag actgtgtcga tagagcgttt ccggtgagcg aggactccck      1980
     ggggtgaggg tggcgcggac acaggagcgg cttagctgca ggtaggtcgt gacgtagtaa      2040
     acaggtagtt tccagtcaga ctgggtgcaa atgtcacaga tttttggttg ggtgcaaatg      2100
     tcactgggtg caattgtcac atatcc                                           2126
//
ID   DNA9-4_LMi  repbase;    DNA;    INV; 1854 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.12, Created)
DT   13-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1854
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3227-3227 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 9-bp long. Short
CC   subterminal TIRs.
XX
SQ   Sequence 1854 BP; 597 A; 332 C; 470 G; 440 T; 15 other;
     ggtgtcctga caaaagcacc cagtgacaaa agcacccagt gacattagca cccagttctg        60
     gtcgaggggc ggtcggctaa tctcccggtc cggtctctgc tcggcaggta gaagagccga       120
     gggctgtgag gtcgcattga cacgggccgt actttacggc aatgcgtggc cgcaatagca       180
     ttgctgcaat gtataatgga agcgagacta aagaagaacc aagacatatt cataagatat       240
     gtgacctgga aaaagccttc gataatgtaa ggtctgcatg atgttcgcaa ttctgagaaa       300
     aataggagta agctgtaggg aaaggcgggt aatacacagt ttgtgtaaga atcaagtgga       360
     tacaataagc atcgaaagtc aagaacgaaa tgctcagatt aaaaaggggg taagaaaagg       420
     twgtggactg tcgccatcac tgttcgcttg cgcaatgaag acgtaatgta ggaaataaag       480
     aacaggttca aggctctgat aaaagttctg ggtaaaagga tatcaatgat aagatttgca       540
     gatgatagga aaattacagg gcctgttgaa tggaatgaaa agattaatga gcaccgaagg       600
     taaaccaaag aaagacgaaa gtcatgagaa gtaacagaaa taaaagtagc gagaaaataa       660
     caaccgaatt ggtgttcaca atgtacacga agacaaggaa ttctgatacc tttgcattaa       720
     actaactcac gacggaagaa gcaagaggga cataaaaagt agactaacac awgcaaagag       780
     ggcatacatg ggaaagagaa atctactgct gtcaaacatc gccctggact tgtggcagaa       840
     atttctctgc gcatacgttt gcagcccaac attgtatgtt tgcgatactt ggactgctgg       900
     gaaatgagaa cagaagagaa ttgaagcatt taagatgtag ttagagagtg gtacaaaata       960
     tctcgtaatt tatttattta ttgtacgtac tgcttgtaag tttacctttt acatccataa      1020
     atgcctgggt attcatgaat ttttggcatt tgcccaggca tttattctgg gcatttgccc      1080
     caccwtgcaa atgtcgaggc attttacatc actaggggaa aacagawtgg aaacatcaag      1140
     caaataattg aggatgtagg ttgcaatgst actctgaaac gaaacggttg gctaaggakt      1200
     tggtggcagg tcgcatcaaa gcagtcagaa gactgatgac tagggatgcg aacgatamat      1260
     ctacgttttg aaaacatcga cgtttgcccc aaaacatcga tgttaacagc gatgtttgaa      1320
     catcgatata tckccgatgt atcggcgata gaagtcgaaa actatcaaca ccgttaaatc      1380
     ctggttctaa gcctttttac tgtatatkaa aaggatgttc tacagtattg catgttatta      1440
     aaaacwaagg aagaaacaaa tatttgggtg tttatttccg aawaagwgac aattttcgaa      1500
     tgtgtgtgaa tgtattcaca gatacatgac cactgcggcg tctgaaaatg cgtacctagc      1560
     tcacaaatac acaaattgca cgaaccgaac actacgatct tcakaatcgt actgacagtt      1620
     agcagtcatc cgctgaggtg gacaaggacc tcgggactgc aggcagactg tgtcgagaga      1680
     gcgtttccgg tgagcgagga ctgggcggcg tggcattacc gcgtamacag gggcggctta      1740
     gsgagggtac gggctgcagg taggtcgtga cgtagtaaac aggtcagact gggtgcaaat      1800
     gtcgcagatt tggggttggg tgcaaatgtc actgggtgct tttgtcacat atcc            1854
//
ID   DNA9-5_LMi  repbase;    DNA;    INV; 1340 BP.
XX
AC   .
XX
DT   25-JUL-2014 (Rel. 19.12, Created)
DT   25-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1340
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3198-3198 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 1340 BP; 383 A; 229 C; 255 G; 473 T; 0 other;
     ggcttaactt tactatccgg gccgccgcgc agtatcgagt gtttagatgt tggctaaggt        60
     gacgtcatct gaccagccaa tcaggtggta gtatacggca gccaatgaaa ttggttcttt       120
     tatactggcg caatattcga atgtattccc ttcgtattga gtatttacag tcaatttact       180
     gagcggacaa gggtacatcg agaacctgtc aaccatagag caggaacagc attaattact       240
     tacttgatgg tcagtgcaaa aaattaatca tttattacgt caatttatat ttacgtaagt       300
     tgtcattcgc aatgtggtag tactttctat tctcaaagaa attgtactga tttctatagt       360
     gatgttttgc atatatgtat cattgcgctg tttatctgct tagggattgc aagttacagt       420
     aaaaatttca ttctgaatgg atattcagcg aaagataatg acgaagaatg tttcctgatt       480
     gtcattgcag tttttttttt cttcgaaagc tgctttttgg ccatactacc ttgtcaagat       540
     agtgttcaca agtgatttta attatggtga ttgtaagact tttgccgctt ttttgtatgg       600
     acataacgtt gagtgttaca acatatggct tcctttaaga gagttgaatg acaatttcaa       660
     taagttgcat tatgagcgta tccaaaggca ttggaaaaat tttcatcatt catatcattt       720
     aagagaaaga cacacttatt tcgatttacg ttacaggaaa gtactgaatt taaacaagaa       780
     acctgtccat gtacagaaac gtaattctgg agttagcgat gttccgcatt cgaatagtgt       840
     tattcatttt aaaaataaag taattgaaac gtgatgttaa cacctttttt tcacatgttg       900
     tgatcatagt gtgttacggt caaagtcagg aagttctaaa caacgatcat tacgctaaca       960
     taaaatacga ttcttatttc gtgatactaa ttataacagt gtttaacatg tatcatttgc      1020
     agttactgat gaatttttcg tgtggtgttc attataaatt gcgtaatatt tcagtgcttt      1080
     cttctcagtg ttttttcact tacgtcataa ttattactac gtttttcgta cattagaata      1140
     ggcaatattt catctcgtct tgatgtgcgt gtttgacatt actttactat caatatcatc      1200
     tatcgtcaaa gcaacacata ggctatatta cgcgatatct gattggctgt caccgtctgt      1260
     gctacgattg gttggccgcg gccgctacca acatctgaac attcgatact gcgcggcggc      1320
     ccggattgta aagttttacc                                                  1340
//
ID   DNA9-N1_SIn repbase;    DNA;    INV; 143 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   04-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNA9-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-143
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 385-385 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 143 BP; 32 A; 44 C; 39 G; 28 T; 0 other;
     ggacgggatc cgatagcgca cggtgcgata gcccaccaac caatcatctt gacttatcta        60
     acccaaccaa cggaaaaact ctaggcatcg gccgctgtga gtggtggtgt gctatcggtc       120
     ccgtgcgcta tcgggatccg ccc                                               143
//
ID   DNAREP1_DM  repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   02-JUL-1999 (Rel. 4.06, Created)
DT   29-SEP-2007 (Rel. 12.10, Last updated, Version 3)
XX
DE   DNAREP1_DM is a putative nonautonomous DNA transposable sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; ARS312_DM; FORK_DM; DNAREP1_DM;
KW   DINE-1; DINE; Dr. D; mini-me; narep1; ARS320; INE1;
KW   microsatellite initiating mobile element; Ars4.
XX
NM   DNAREP1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   284-477
RA   Selick H. and Kauffman S.;
RT   "Direct submission.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
RN   [2]
RA   Tudor M., Mitchelson A. and O'Hare .K.;
RT   "Direct submission.";
RL   Unpublished (1991).
XX
RN   [3]
RP   1-594
RA   Kapitonov V.V. and Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [3] (Consensus)
XX
CC   DNAREP1_DM is one of the most ambiguous repetitive elements in
CC   the D.melanogaster genome. There are several thousand copies of
CC   DNAREP1_DM in the genome. The average divergence between
CC   DNAREP1_DM copies and the consensus sequence is 20%. Presumably,
CC   DNAREP1_DM has been mobilized in a common ancestors of
CC   Drosophilidae since its old age (>20 Myrs) and presence in
CC   different Drosophila species. It's possible that DNAREP1_DM was
CC   active in Brachycera since significant part of DNAREP1_DM has
CC   been found in promoter region of P450 gene (U09343) in the house
CC   fly genome [3]. DNAREP1_DM is classified as a nonautonomous DNA
CC   transposon because of noticeable conservation of its termini and
CC   multiple internal deletions [3]. Previously reported ARS312
CC   repeat [1] is a ~200 bp-long portion of DNAREP1_DM. DNAREP1_DM is
CC   a portion of FORK_DM direct repeat [2] flanking forked gene
CC   suppressor (portion 435-949 of FORK_DM is 88% identical to
CC   DNAREP1_DM. FORK_DM has been removed from Repbase Update since
CC   its other portions are not repeats [3]. Putative relation of
CC   DNAREP1 to DNA transposons is also supported by the 79%
CC   similarity [3] between its 145 bp-long 3`-terminus and 134
CC   bp-long 3-terminus of P-like P_DG element in Drosophila guanche.
XX
SQ   Sequence 594 BP; 180 A; 133 C; 99 G; 182 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccatataaag tatatttata tatatatata tattcttgat       120
     caggatcaat agccgagtcg atctggccat gtccgtctgt ccgtatgaac gtcgagatct       180
     caggaactat aaaagctaga aggttgagat taagcataca gattctagag acatagacgc       240
     agcgcaagtt tgttgaccca tgttgccacg cccactctaa cgcccacaaa ccgcccaaaa       300
     ctgccacgcc cacacttttg aaaaaatttt ttgatatttt tcatattttt attagtcttg       360
     taaatttcta tcgatttgcc aaaaaacttt ttgccacgcc cactctaacg ccctaaagcc       420
     gcccaaaact gtcacgccca cacttttgaa aaatttttaa attttttctc attttattcc       480
     ccaatatcta tcgatatccc agaaaaatta tgaaatttcg cgttcgcatt cacactagct       540
     gagtaacggg tatctgatag tcggggaact cgactatagc attctctctt gttt             594
//
ID   DNAREP1_DSim repbase;    DNA;    INV; 692 BP.
XX
AC   .
XX
DT   30-OCT-2011 (Rel. 17.08, Created)
DT   30-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Helitron-type element: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   DNAREP1_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-692
RA   Jurka J.;
RT   "DNA transposons from Drosophila.";
RL   Repbase Reports 12(8), 1373-1373 (2012).
XX
DR   [2] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 692 BP; 207 A; 163 C; 114 G; 208 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccatataaag tatatatatt cttgatcagg atcaatagcc       120
     gagtcgatct ggccatgtcc gtctgtccgt atgaacgtcg agatctcagg aactataaaa       180
     gctagaaggt tgagattcag catacagatt ctagagacaa agacgcagcg caagtttgtt       240
     gacccacgtt gccacgccca caaaccgcac aaaactgcca cgcccacact tttgaaaaat       300
     gtgttcgata ttttttcaca tttttattag tcttgtaaat ttctatcgat ttgcaaaaaa       360
     actttttgcc acgcccactc taacgcccta aaaccgccca aaactgccac gcccacattt       420
     tgaaaaattt ttcgatattt tttcataatt ttattagtct tgtaaatttc tatcgatttg       480
     ccaaaaaact ttttgccacg cccactctaa cgccctaaag ccgccgaacc ggtcacgccc       540
     acacttttga acaattttta aattttttct cattttattc cccaatatct atcgatatcc       600
     cagaaaaatt atgaaatttc gcgttcgcat tcacactagc tgagtaacgg gtatctgata       660
     gtcggggaac tcgactatag cattctctct tg                                     692
//
ID   DNAREP1_DYak repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   29-SEP-2007 (Rel. 12.10, Last updated, Version 3)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; DNAREP1_DM; nonautonomous; Helitron-1_DYak;
KW   DNAREP1_DYak.
XX
NM   DNAREP1_DYak.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   793-1
RA   Kapitonov V.V. and Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
RN   [2]
RP   793-1
RA   Kapitonov V.V. and Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Proc Natl Acad Sci USA 100(11), 6569-6574 (2003).
XX
RN   [3]
RP   1-793
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 127-127 (2007).
XX
DR   [3] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron transposons transposed in the Drosophila yakuba genome a
CC   few million years ago (numerous copies are less than 2% divergent
CC   from the consensus sequence). DNAREP1_DYak is a deletion
CC   derivative of the autonomous Helitron-1_DYak. These transposons
CC   are usually inserted in the ttw|TTT target sites without the
CC   target site duplications (the insertion site is marked by "|").
CC   Different families of Helitrons constitute >3% of the D. yakuba
CC   genome. After a few unsuccessful attempts [1-2], this is a final
CC   classification of DNAREP1_DM as a Helitron transposon. While
CC   DNAREP1 elements have lost their mobility in D. melanogaster,
CC   they have been mobile in the D. yakuba genome until the last ~1-2
CC   million years.
XX
SQ   Sequence 793 BP; 217 A; 201 C; 136 G; 239 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccatataaag tatatatatt cttgatcagg atcaatagcc       120
     gagtcgattt ggccatgtcc gtctgtccgt ccgtctgtcc gtctgtccgt ctgtccgtct       180
     gtccgtctgt ccgtccgtat gaacgtcgag atctcaggaa ctacaaaagc tagaaagttg       240
     agattaagca tacagactcc agggacatag acgcagcgca agtttgtcga ttcatgttgc       300
     cacgcccact ctaacgccca caaaccgccc aaaactgcca cgcccacact tttgaaaaat       360
     gttttaatat tttttcattt ttgtattggt cttgtaaatt tctatcgatt tgcaaaaaaa       420
     ctttttgcca cgcccactct aacgcccaca aaccgcccaa agctgccacg cccacacttt       480
     tgaaaaatgt tttaatattt tttcattttt gtattggtct tgtaaatttc tatcgatttg       540
     caaaaaaact ttttgccacg cccactctaa cgcccacaaa ccgcccaaag ctgccacgcc       600
     cacacttttg aaaaatgttt tgatattttt tcatttttgt attagtcttg taaatttcta       660
     tctatttgcc aaaaaacttt tggccacgcc cactctaacg cccacaaacc gccaaaaact       720
     gtccttcgca cttacactag ctgagtaacg ggtatcagat agtcggggaa ctcgactata       780
     gcgttctctc ttg                                                          793
//
ID   DNAREP2_DSim repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from fruit fly, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   DNAREP2_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-567
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(8), 1381-1381 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. It is ~89% identical to DNAREP1_DM.
XX
SQ   Sequence 567 BP; 176 A; 141 C; 87 G; 163 T; 0 other;
     ttatacccct tactcgtaga gtaaaagggt atacgagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gggtttccga ctatacatat agatcaggat caatagccga gtcgatccgt       120
     ctttccaact gtccgtctgt ccgtatgaac gtcgaaatct caggaactat aatagctaga       180
     attttaagat tcagcattct gaattctaga gacaaggacc tagggcaccc atgttaccac       240
     gcccactcta acgcccacaa accgcacaaa actgccaccc ccacactttt gataaatgtg       300
     ttgatgcaca tttctattaa tcttgtaaat ttctatcgat ttccaaaaat aatttttgcc       360
     acgtccactc aacgccacaa aaaccgccca aaactgccac tcccacattt ttgaacaatt       420
     tttaaatttg ttcattttat tcctcatttt ttttccccaa atatctatcg atatcccaga       480
     aaaatcagga aatttcgcgt tcgcattcac actagctgcg taacggatat ctgatagtca       540
     aggaactcga caacagcatt ctctctt                                           567
//
ID   DNAX-10_AP  repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-10_AP.
XX
NM   DNAX-10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-224
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2065-2065 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD unclear.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 224 BP; 64 A; 51 C; 44 G; 65 T; 0 other;
     taaagccgga ttcacagctg cgtcgtgtgt cgtgtcgtgt cgatcaaatc gtattgtgat        60
     tggatattac ttttttggta tcatgtaata accaagttgc aaccgagtat accaagaatt       120
     gactactgct caacttttaa accatattgg ttaccagtcg taaccatata ataaccaagc       180
     cctcgcacga cacgacacac gacgtagctg tgaatgcgcc ttta                        224
//
ID   DNAX-1_AP   repbase;    DNA;    INV; 796 BP.
XX
AC   .
XX
DT   22-AUG-2009 (Rel. 14.08, Created)
DT   22-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A putative family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-1_AP.
XX
NM   DNAX-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-796
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1778-1778 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   2 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 796 BP; 279 A; 95 C; 110 G; 312 T; 0 other;
     gacgtttcgt ccccggcaat tattgagata ggacgtttcg tcccggagag ttattagcca        60
     taggacgttt ggtccccggc atactttgat aatctaaatg catttatttt taatgaacaa       120
     ttctgtaatg tctaatatat agtgttgtaa agtatttgag taaaattatt caaatatttt       180
     attaaatact tttttttatt cttttaattc ttaatttgtt tctacttata attattcttg       240
     ttaaataaaa ataccatgcc gtcgtggttt tactttaaca ttataacaat gtaatattat       300
     ataattattt actactttat tttaagagta tttgagtaat taaaagtttt acaacactgc       360
     taatacagta tggctatagg taagtaataa agatctgaaa ttctaaattt aattaatata       420
     aattaaaatg taccgaaaat agttttaagg aaaagaaatt gcaatatatt gcacgggatt       480
     tcaatataat gatgataatg acattttata ctatttaaaa aacataagtc agttgcctaa       540
     aaataaatat ataatttatc ttaatattat agtacctatt taattttaat ttattaattt       600
     ttactacatt ttgtgttgac ttaatacaat tgtgattatg tatttgtata gtttgtagta       660
     ttgtcattta aagattaaat tgttcattaa aaattaatgc atttagatta tcaaagtatg       720
     ccggggacaa acgtcctatg gaataactct ccgggacgaa acgtcctatc tcaataattg       780
     ccggggacga aacgtc                                                       796
//
ID   DNAX-1_TCa  repbase;    DNA;    INV; 1517 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1517
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 670-670 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1517 BP; 553 A; 222 C; 185 G; 557 T; 0 other;
     tgtacagggt gctgcatttt ggatgtccga ataggggatc tccgaaacta agaggtttag        60
     agaaaaacga gtgacacatt ctcgggtccg ttttttgaga aaataatttt ggtcaaaacc       120
     gcatctcgct atcgtctttt gttttcgact tataaacaaa agttgacatt ttagcgaaat       180
     cttaaaaaat tcatatcttc cttattataa aagatacaca tttgaaacaa agacattata       240
     caggcacttt ttttcagaga atttaataat gttatcagcg atttttttca accattcgtt       300
     taactgtaat aacataaagt tgtatttttt taaataggaa tcatagttgg ctatgacatt       360
     ttcgaaaagc ttattttttt ctgatttgat atgtctattt gtgtaataca ttaattttaa       420
     atatttaaga aaaaacaaaa catttcgctt tttctttata gtaggccatg aaaaaatttt       480
     ggatttttaa ttaaaactat gaaaattgta ttacccaaca agtatttata atttaatgat       540
     tttttaaacc ctaattaatt caaaaacagc ataataaatt attattagat caaatttttg       600
     caattaataa aaattatttg tttttatatt taaaatggca agcttacgtt gtcattctat       660
     tttccaattt taaacatgaa atgtcggaag aagaaaaatc ttattaattg tatgattgcg       720
     tatcaataaa attttatttt acaaaaaaat gtcaatccaa acaccaaaat caaattccat       780
     ctgcggtaaa aaaatacaca acattatcaa cgtacacctc cattgcactt cactaaatca       840
     taaaaaagtg tcatcaaatg gtagtgacac atcgttttca attttctgca cattttttat       900
     gtaattaaaa tctgcgacga tcgtatattt gttcaattga aaataacttt aacatagctt       960
     atttttataa tttcacattt tttactttaa taaccgttca caaaatttct agattattca      1020
     caccttttat gtgaaataat ttttccatgg ccaactactt tcaaatattt taaatatatt      1080
     ttttatcaaa agtatataaa aatatcaaac tatatttata ttgttttgag ttcagaaaaa      1140
     aataagcttt tcgaaaatgt catagccaac tatgattctc atttaaaaaa aatacaactt      1200
     tatgttatta cagctaaacg aatgattaaa aaaaatcgct gataacatta ttaaattctc      1260
     ctgtaaaaaa gtgcctgtat aatgtctttg tttcaaatgt gtatctttta taataaggaa      1320
     gatatgaatt ttttaagatt tcgctaaaat gtcaactttt gtttataagt cgaaaacaaa      1380
     agacgatagc gagatgcggt tttgaccaaa attattttct caaaaaacgg acccgagaat      1440
     gtgtcactcg tttttctcta aacctcttag tttcggagat cccctattcg gacatccaaa      1500
     atgcagcacc ctgtaca                                                     1517
//
ID   DNAX-2_AP   repbase;    DNA;    INV; 467 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-2_AP.
XX
NM   DNAX-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-467
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2052-2052 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TA or TAA TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 467 BP; 162 A; 45 C; 48 G; 212 T; 0 other;
     cagggtgtaa cagatagaac tgacttttgg aataactttt gttctaatca atatttaaaa        60
     tttttttttt atatataatt tatagtcact tgcgctacac atatattata caaaaaatta       120
     tttttatttt ttaacactga aaataaaaaa tttaaaattt gatttaaatt tttttggata       180
     tattcaaaat agccaatttg tgaatctgat tataagaaca attttgatag taaaaacatt       240
     tatctaagat caagtagttt attttttaga atttttttaa atatcaatat ttttttgatt       300
     aaatgaattt ggaacgtaat aacttttttc aaaatatttt ttttgggaat ttgctgacat       360
     gagtatattt cttaaattat ttactaatca tataatttta acaatttttg tcatacgttt       420
     aagtagcatc attttttttt ttcgtcaagt ctttctgtta caccttg                     467
//
ID   DNAX-2_TCa  repbase;    DNA;    INV; 1506 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-2_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1506
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 671-671 (2009).
XX
DR   [1] (Consensus)
XX
CC   3bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1506 BP; 533 A; 280 C; 249 G; 444 T; 0 other;
     atgcccggtt gcacaaaaga taattgacaa ttaacaaagc gttaatcgtc catcaaaaat        60
     tttgtgcaac acaaaacacc gttgacggct gattaatctc tcatcaaata tttgatgaac       120
     gtcaaagata attgtcaatt aatcgttgat taactccgtt ttccgttgca caaacgcaaa       180
     tcaaggcaaa tgtcatagtt aatcagtgat taacgaatca tcaatttgat ggccgaacga       240
     cgggcgatta atctctgatt aaccgtcttt aacacttgtt gtttgagaat ttaaggtgtt       300
     tttgataaaa tttcattaac taaactgaac cattacctaa ggggtaagac aataacaaga       360
     attaaagaag aaaaccttga atttatttta ttggatgaga atggttatgt gcaaatgact       420
     gaagtgtctg agaggcctgt gcagaaaatc agagatcttg aggatctgtt tgagatgttg       480
     gttaaccatg agtgtaaaaa gcgctttagt ttaaataaaa accagagtaa aaattgcacc       540
     aaaacgcaac taatcaaatc tctcagtgca caaacaaaat tttaattttt tttgcgtttt       600
     tggttttttg tcttttgtag aacatttgta gggttatcac agaaagtcac aacacaactc       660
     gctcacacat gaatttgtat cgtttgttca atgaaacaat tcgaggaata actcattttt       720
     taaccaataa cataatatcc actttattgc ttcccaatgt gccaatgcgc atgattcact       780
     tttaaacagc attgtccaac agttcgaata acttaacaaa aaaagaaatg caaaaacttt       840
     attagtttta gttgaaataa aaccccaatg ttcaaatcaa ggtttattga ttttggtaat       900
     aaacacgtgt agattccttt acgccctaac ttcatctacc cttagggcta ttcccttgtt       960
     tcgccttcag gaatcgcttc ttggtacccc cttggcactt agtggcaagg caaaaacccc      1020
     cgaaaaaaga aaagtggaga gttcgcgaac acgtcaaaat ttcacaacgc caattttgct      1080
     tcttgcaccc tttaggtcta gaaattttcc ataaactcat atcactagaa ttaacaaatc      1140
     aacacaaggc cacaaacacc atttctggca tcatagattg tctacaccaa acagaacttt      1200
     ttgaagacga aagaacacaa gttaaatcgt caaataaagc actgagtaaa acccgaagtc      1260
     cgagaaaaca caatattaat aaaaaaaatc aggctgtcaa atgtatatca aatgacaaat      1320
     tcaagacgta aggccttgtt gccaaattgg ttttttgcta atggatgatt aacggagcat      1380
     catatgatga acgattaaaa catgagcaaa ttgttttgtg caacgcaatc aaaattaaca      1440
     agccatcaat ttttgacgga ccatcatatg atggccgatt aatttgactt ttgtgcaacc      1500
     gggcat                                                                 1506
//
ID   DNAX-3B_AP  repbase;    DNA;    INV; 138 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-3B_AP.
XX
NM   DNAX-3B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-138
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2053-2053 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 138 BP; 21 A; 42 C; 44 G; 31 T; 0 other;
     tctgtccagc gagagaacgc gccgattctg cgcatccccc cgcgtcacct tgctatcgaa        60
     accggttccc ctatggcagg atgttgggtg ggggaaccag ttttggtcgg tgcgcggcgc       120
     gttctctcgc tggacaga                                                     138
//
ID   DNAX-3C_AP  repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-3C_AP.
XX
NM   DNAX-3C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-144
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2054-2054 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   4bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 144 BP; 26 A; 41 C; 44 G; 33 T; 0 other;
     tactctgttc agcgagagag cacgctaatt ctgcgcatcc ctccgcgtca ccaggctatc        60
     gaaaccggtt ccccaatggc agggtgttgc gtgggggaac cagttttcgt cggtgcgcgg       120
     cgtggtctct cgctgaacag agta                                              144
//
ID   DNAX-3_AP   repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-3_AP.
XX
NM   DNAX-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-150
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2055-2055 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD duplication unclear (it could be TA or TATA)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 150 BP; 27 A; 44 C; 44 G; 35 T; 0 other;
     ctatactctg tcccacgaga gaacatgccg gttctgcgca tccccctacg tcaccctgct        60
     gtcgaaactg gttcccctat gacagggtgt cgcgcggggg aaccagtttt ggtcggtgcg       120
     cggcatgatc tctcgtggga cagagtatag                                        150
//
ID   DNAX-3_TCa  repbase;    DNA;    INV; 2328 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-3_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2328
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 9(3), 672-672 (2009).
XX
DR   [1] (Consensus)
XX
CC   2bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 2328 BP; 721 A; 421 C; 429 G; 755 T; 2 other;
     gtccgggaca tttctatttg gacataaaaa atttgaattt tctgacattt atacgtgtat        60
     tcagcgtcta tgtgaacaaa aaatgttctc tctctcattc tatggtcctt gagctttaat       120
     aacagggaca ttttttaaat tggtagcatt agaaaatgac agtaaacagc tgactgatgt       180
     aaacaataac aaaggaaatg ttataatttt aatctatata accagtggct gctttaaaag       240
     tgtgtactaa cgggataata acatatttac gcaagtattt ttgaaggtag aaacattact       300
     tgtcatataa caattactta gattatatga tgagacggga atggcacaac acagaattgc       360
     agtcagtgat tgtgctggag aaagctgctg tgacgtactg acagtactga ctatcgctgg       420
     ttgtacgatt tgtgcaattt gtgatatatt ttgtgtgaaa aactggaaaa caaagtgcat       480
     aactgcataa cctcacttat cgcagttttg cacattttga tgatgggaat tgcggttcaa       540
     gtaattatga gttatagatg gagcccactg tttacttcaa agtaagttca cgacatttac       600
     agatactttc tttatgtttt tgtcttttct ggtgtagagg gttaaccttt ctattttcat       660
     ataaaattca aaccaaacga aatcgaaaag cttaatattg tcatgttttt tattaattat       720
     taaaaaattt atttaaaaaa tcacagatag tgtttataat ttgcagctga agccttttgg       780
     gtccactttt ttcgttgtta tttcctggta gccactcttg tttcaagcag aatgggtgta       840
     aagttaaaaa taatcccata aaattgttaa tataactcct ttgcactggc atggggtatt       900
     tgaaaactta cgtttaacaa atacgtcaca aagtctcagc catcgtcgaa aaacataata       960
     agggctttat aacaagaagc gctttccgat tttactgtgg acgtgtggaa gaatagtgtg      1020
     aaatattgcg aaaaaccaac ttttactctt gtttacattt ttgtacgtct ctatctgaga      1080
     gtagtcgtct tgtataaaaa atatagccta ctaataaagg aaattaaagt gtttttattt      1140
     ctgggttgcc cccaattcca ctttgccctt gcctgataat caagacactg ataatgaaat      1200
     tggtgtaagt gcatcgaata caaacgtgtt gaatagatga ataaaagaga gacaactgct      1260
     tttttcaaaa aggccatttc aaatttattc aaaaagcaca cccccattga aaagggtcca      1320
     ttcacgatga agtttggctt cctgcatgac ataggtctcg grcaccaatc tcactgtaaa      1380
     tggtctaaat tggtcttgca tctctaagac atggactcac tgagagcgac ttctgcagta      1440
     ggcttgagac ctgcctgcct gtctcgcaac aatctctgca ttatgattcc aaatcattct      1500
     ataaaacgct gtcaattaca agccatgata tgaggcatga ggccgtctca gtgtatgtct      1560
     tgtggtgtac attgaaactg tttcttaaag aacccattca caatgagatc tgcttcgcta      1620
     catgcggcgc gacaggactc aaagactaat cccaaaagac acaaaaaact gacacagttt      1680
     atcattttaa gccattgaca gcgttttcga atgttggtgc aaagacttgt cgcgaggcag      1740
     gtttcagcct tccgccaacg tcagtctcag tgaaaccctc tcaaagtgat ctcagcgaaa      1800
     accattcaca atgagattgr tctatgaggc ctatgtcgtg ccgcatgcag cgagatatgt      1860
     ctcattgtta atgaaaatag ggcctttttt gttgtttaaa gtcgtttttt aaaacttttg      1920
     tggcaaattt tactgatgtg gcagagaggg ggcatgcaat tggaacatga cgatgactac      1980
     cctaaaaggc acttcgaggc ttttatggcc tttttaatgc aaatttcaac tttaaacctg      2040
     acagtcatac caaggtcaaa cataacctca acagtaatcc agcaacggta cttcaaagca      2100
     tttgaaagtt tctccatttg tttttaagtg ttctagttgg tacattttgc tgtactttac      2160
     tacaataaag aaatatttaa atttttatta ttgtttacat ttgtcatctg tcaaacacat      2220
     caaacaacca agttccctaa atttgagctc ttatctagtt tttgtgctct atatagtctc      2280
     gcgtcaacgt atgcgctatg acgtatctca tatagaaatg tcccggac                   2328
//
ID   DNAX-4B_AP  repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-4B_AP.
XX
NM   DNAX-4B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-173
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2056-2056 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD duplication unclear (it could be TA or TATA)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 173 BP; 37 A; 55 C; 40 G; 41 T; 0 other;
     ctctgttcaa gttaagaaac gtagtcggcg gcgaccagtt ttcgtcgggc cgcagtcagg        60
     caacacccgt ttgtcacccc cacccagtca attatctgta tacctgccgt gtagtattgc       120
     cacgcccctg cgcacaagtc ggccgccgac tacgtttctt aacttgaaca gag              173
//
ID   DNAX-4_AP   repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-4_AP.
XX
NM   DNAX-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-172
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2057-2057 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD duplication unclear (it could be TA or TATA)
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 172 BP; 39 A; 54 C; 39 G; 40 T; 0 other;
     ctctgttcaa aataagaaac gcaaacggcg gcgaccagtt ttcgtcggcg gcagtcaggt        60
     aacacccgtt tgtcaccccc accgagtcac caatctatat acctgccgtg tagtattgcc       120
     acgcccctgc gcacaagtcg gccgccgtct gcgtttctta ttttgaacag ag               172
//
ID   DNAX-5_AP   repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-5_AP.
XX
NM   DNAX-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-155
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2058-2058 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 155 BP; 39 A; 23 C; 41 G; 52 T; 0 other;
     tcccgttaca acgaactcca agggactgaa ttttttttcg ttataacgga aatttcgttg        60
     taacgaaggt agaaggtagg taaggtcggt aggggacttc tatgactttc gttataacgg       120
     gatttttcgt tgtatcggta ttcgttgtaa cggga                                  155
//
ID   DNAX-6_AP   repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-6_AP.
XX
NM   DNAX-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-258
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2059-2059 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is either TA or TATA
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 258 BP; 54 A; 73 C; 74 G; 57 T; 0 other;
     tattcagaat aagaattccc actcgcttga cgaaaactcg tcttgttcgc gcatgtctgt        60
     tgccaccagt tggcgctgat gtttgcagcg ccgcccccgc cgacgttccg caggtgtata       120
     cgtatacgat agcgacgggt gacggcagcc gtcgacaact ggcgaccaat cacagcgcag       180
     ccgacactcg ccaggggggt ctgacagctg ccggcggttc agttgcgtgc gcgaaagtgg       240
     gaattcttat tctgaata                                                     258
//
ID   DNAX-7B_AP  repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-7B_AP.
XX
NM   DNAX-7B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-279
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2060-2060 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD TATA or TA.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 279 BP; 58 A; 86 C; 83 G; 51 T; 1 other;
     ctccggccac tctaagagcg cttctgggcg gcgaccaaaa ttcgtccgtt ctcgcgcatt        60
     cccaccacta aactctttaa aacactggcc gccgtcaacg cgagccgccg acaccgtcgc       120
     cgtcgctgct cccactcacc tacgccaccg ccgaccgnga actgagtggg ggtatttacg       180
     gcggcaacta ggtgatagag tgggagaaat ttgggtacgg aaccgcggag ctcggtcagt       240
     tggatgcgcg aaggagtagc gctcttagag tggccggag                              279
//
ID   DNAX-7_AP   repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-7_AP.
XX
NM   DNAX-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-311
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2061-2061 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD TATA or TA. Note imperfect TSDs.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 311 BP; 51 A; 110 C; 102 G; 48 T; 0 other;
     ctcgggccga cgagagaacg ctattgggcg gcgaccaaaa ttcgtccgat ctcgcgcatt        60
     cccaccacta aaccttcccg aactgctggc cgccgtcaac tctggccgcc gccgccgtcg       120
     ccgccaccgt cgcggccgcc gccaccgtcg ccgccaccgt cgcggccgcc gccgccgccg       180
     ccggtcgcgc gtagcgagtg ggggaattta cggcggcgac tagatggtag agtgggagaa       240
     atttgggtac gaaaccgcgg agctcggtca tttggatgcg cgaacgagta gcgttctctc       300
     gccggcgcga g                                                            311
//
ID   DNAX-8B_AP  repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-8B_AP.
XX
NM   DNAX-8B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-152
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2062-2062 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   tsd TA or TATA.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 152 BP; 36 A; 46 C; 42 G; 28 T; 0 other;
     ctccggccca cgagagaagt aactcgtgtc ccgaccaaat cgcgtccgaa tccgcgcatc        60
     tccacgtatt tgacatacag cgaaaggcac taagtggggg aattccgcca gtcagcatgc       120
     gcgaaacggg ttacttctct cgtgggccgg ag                                     152
//
ID   DNAX-8C_AP  repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   28-AUG-2009 (Rel. 14.09, Created)
DT   28-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-8C_AP.
XX
NM   DNAX-8C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-151
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2063-2063 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   tsd TA or TATA.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 151 BP; 36 A; 46 C; 41 G; 28 T; 0 other;
     ctccgcgcca cgagagaagg aacccgtgtc ccgaccgaaa cacgttcgat tccgcgcatc        60
     gccacgtatt tgacatacac taaatggcac aaagtgggga atgcctacag tctgcatgcg       120
     cgaaacgggt tccttctctc gtggcgcgga g                                      151
//
ID   DNAX-8_AP   repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; DNAX-8_AP.
XX
NM   DNAX-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-152
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2064-2064 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TA or TAA TSD
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 152 BP; 40 A; 43 C; 38 G; 31 T; 0 other;
     ctgcggccca cgagagagta ttactgtcgc ccgacgaaaa cacgttcgat tccgcgcatc        60
     gccacgtatt tgacatacac taaatggcac aaagtggggg aatgcctaca gtctgcatgc       120
     gcaaaactgt aatactctct cgtgggccgc ag                                     152
//
ID   Dneoca1     repbase;    DNA;    INV; 415 BP.
XX
AC   GU229944;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dneoca1.
XX
OS   Drosophila neocardini
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; cardini subgroup.
XX
RN   [1]
RP   1-415
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229944; Positions       1     415.
XX
CC   Clone Dneoca1.
XX
SQ   Sequence 415 BP; 99 A; 112 C; 108 G; 96 T; 0 other;
     tgggtgccgc atgagttgac gcaaataaac atttttgact gtatggatgc atgcgaatcg        60
     cttctgaatc gcaacaaaat cgacccgttc ttgcggtgaa gctgcccaga cggtggccaa       120
     gcctagattg acggccagga aggttcttct gtgtgtttgg tgggattgcc agggaatcat       180
     ccactataag ctgctcccct atggccaaac gctcaattcg gacctgtact gccaacaact       240
     ggaccgcttg aatgcagcac tcatgcagaa gagggcatct ttgatcaaca gaggccgaac       300
     tgtcttccat caggacaacg tcaggccaca cacatctttc gtgacgcacc agaagctctg       360
     ggagctcgga tgggcggttc atttgcatgc accgtattgt ccggacctcg cccca            415
//
ID   Dneoca19    repbase;    DNA;    INV; 430 BP.
XX
AC   GU229947;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mauritiana subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dneoca19.
XX
OS   Drosophila neocardini
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; cardini subgroup.
XX
RN   [1]
RP   1-430
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229947; Positions       1     430.
XX
CC   Clone Dneoca19.
XX
SQ   Sequence 430 BP; 137 A; 102 C; 96 G; 95 T; 0 other;
     gattcttcgg taaaaaagaa agggtgtttt gataaataga gagacctgcg atgaaaagtg        60
     gatatactat aacaacccga agcggaaaat atcgtggcga cttcatggcc atgcatcaac       120
     ttcaaaagca aaacctaata ttcatggctc aaagctgatg ctgtgtatct ggtgggacca       180
     gctgggcata gtgtactatg aacttttgaa accaggccaa accatcaccg gagacctcta       240
     tcggactcaa ctgatgcgtt tgagtcgagc gttgagagaa aaacgcccgc aatactcgga       300
     aatgcacgac aaggtcatac ttctgcatga caacgctcgg ccacatgttt ccaaggtagt       360
     aaaaacatac ctggaaactt tgaaatggga catcttaccc cacccgccgt acagtcctga       420
     cctagcccca                                                              430
//
ID   Dneoca1cons repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dneoca1cons.
XX
OS   Drosophila neocardini
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; cardini subgroup.
XX
RN   [1]
RP   1-492
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   D neoca1cons.
XX
SQ   Sequence 492 BP; 137 A; 113 C; 120 G; 122 T; 0 other;
     tttgggtgcc tcatgagctg actcaaaaaa atttcttgga ctgaaataac gcctgcgatg        60
     cactgctcaa acgtaataaa gtcgacccat ttttgaagtg gattgtgact ggagatgaaa       120
     agtggatcat gtgcgacaac tccaagcgaa aacgatcgtg gtcgaagtgc ggcgagctag       180
     cccaagccat ccctaagtcc ggattgacgg ctagaaaaat attgctgtgt ttggtgggac       240
     tggaagtgaa ttattcacta tgaactgctt aactattgcc agaccctaaa tttagccatc       300
     tattgcgagt agatcgaccg tttgaagcag gcgatcgacc agaagcggcc agaaatggtt       360
     aatgggaata gtgttttgtt ccaccaggac aatgctcgac cacacacatc cttgatttct       420
     cgccagaagc tacgtgagct cggatgtgga tatcctatcg catccaccgt actgcccaga       480
     ccttgctcca ag                                                           492
//
ID   DOC         repbase;    DNA;    INV; 4725 BP.
XX
AC   X17551;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   DOC LINE-like retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   LINE-like retrotransposon; DOC.
XX
NM   DOC.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4725
RA   O'Hare K.;
RT   "DOC.";
RL   Direct Submission to Genbank (21-NOV-1989)O'Hare K., Imperial
RL   College of Science, Technology & Medicine, Department of
RL   Biochemistry, London SW7 2AZ, U K.
XX
RN   [2]
RP   1-4725
RA   O'Hare K., Alley R.M., Cullingford E.T., Driver A.
RA   and Sanderson J.M.;
RT   "DNA sequence of the Doc retroposon in the white-one mutant of
RT   Drosophila melanogaster and of secondary insertions in the
RT   phenotypically altered derivatives white-honey and white-eosin.";
RL   Mol. Gen. Genet 225(1), 17-24 (1991).
XX
DR   GenBank; X17551; Positions       1    4725.
XX
CC   DOC is a LINE-like retrotransposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           213..1907
FT                 /product="DOC_1p"
FT                 /translation="MNQNDIRSQRQCEQDERRLSLQRNNAYFSFVSPQIGD
FT                 RAPSPSTNSKLLPSANDRPRSCSPSLPASAHKSWSEETASPTPLLSQRQTT
FT                 VPGNCNTAITSAVTSLATATTSTSSAAQLIIAVPAVNNSAALTVCNNNNAR
FT                 KEESKQKQKSISTVQTGMDRYIQIKRKLSPQNNKAGNQPKINRTNNGNENS
FT                 AVNNSNRYAILADSATEQPNEKTVGEPKKTRPPPIFIREQSTNALVNKLVA
FT                 LIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKS
FT                 CKGLQVVLKGIEATVTPAEIIEALKAKNFSAKTAINILNKDKVPQPLFKIE
FT                 LEPELQALKKNEVHPIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTK
FT                 AYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGCVVYK
FT                 ELKSRLNKRIATAHTYNKVNFYSPQPIFQPPLTVPSTTPTISFASALKSGL
FT                 EVPAPPTRTAHSEHTPTNIQQTQQSGIEAMMLSLQQSMKDFMTFMQNTLQE
FT                 LMKNQNILIQLLVSSKSP"
FT   CDS           1910..4573
FT                 /product="DOC_2p"
FT                 /translation="MASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSE
FT                 THLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYL
FT                 QSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNA
FT                 KHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLID
FT                 FAITKHVPRNMVTAEALADLSSDHSPVFLNMLTRPHIVDPPYRLTNFRTNW
FT                 PRYQKYVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAKPN
FT                 YIKTNREIERLVLDKRRLRRDWQSNRSPITKHMLKIATRRLTNALKQEEKN
FT                 SQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERAS
FT                 AFADHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLN
FT                 PRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMI
FT                 PKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGF
FT                 REKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKII
FT                 KLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTL
FT                 YTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWR
FT                 ISINVQKCKQVTFTLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRK
FT                 HIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWG
FT                 NASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKT
FT                 KYNEKLTTHTNPLARKLIRVCSQSRLHRNDLPAQQ"
XX
SQ   Sequence 4725 BP; 1647 A; 1192 C; 822 G; 1064 T; 0 other;
     gacattcggc attccacagt cttcgggtgg agacgtgttt ctttcaagct acgaatagca        60
     agttctaaaa actacaacag tatagtgaaa gttaaacaca aagtgtaaag tgcagtttgc       120
     acaactaaca attattgact atagtaatta tttactaaaa taaataatta ttccatattg       180
     ttctggtaat tgttatatgt ggacttagaa caatgaatca aaacgacata cgttctcagc       240
     gacaatgtga acaagacgag cgccggctct ctttacaacg caacaatgca tacttttctt       300
     tcgtctcacc gcaaatcggt gatcgagcac cctcaccttc aactaactcg aaacttttgc       360
     cctcagcgaa cgacagaccg cgttcttgct ctccctctct gcctgcttcg gctcacaagt       420
     cgtggagcga agagaccgcc tctcctaccc cgctcctctc gcagcgccaa acgaccgtcc       480
     cgggtaactg taacactgca ataacgagtg cagtgacctc actggcaact gccacaacat       540
     caacttcgtc agcggcccaa ctaattatcg ctgtgccagc tgtaaataat tcagcagcac       600
     tgaccgtttg caacaacaat aatgcacgta aagaagaatc aaaacaaaag cagaagtcga       660
     tttcgactgt gcagactggc atggatcgct acatccaaat caagagaaag ctcagccctc       720
     aaaacaataa ggcaggtaat caacccaaaa tcaatcgaac caacaacggc aatgaaaact       780
     ctgcagtaaa taattcaaac cgatatgcta tcttggctga ttctgcgacc gaacaaccca       840
     acgaaaaaac ggtaggggaa ccaaaaaaga ccaggcctcc accaattttc atacgagaac       900
     aaagtacaaa tgcacttgta aataaactcg ttgctttgat tggtgacagc aagttccaca       960
     ttatcccact taaaaaagga aatattcatg aaataaaact acagatccaa acagaagcag      1020
     accaccgtat agtgactaaa tacctaaatg atgctggtaa aaactactac acataccaat      1080
     taaaaagttg caaagggcta caggtagtac ttaagggcat tgaagcaaca gtgacaccag      1140
     ctgagataat tgaggctctg aaggccaaaa acttttctgc aaagacagct attaatattt      1200
     taaacaaaga caaagttccg cagccactat tcaaaataga actcgaacca gagctccagg      1260
     cactaaagaa aaacgaagtg cacccaatat acaatttaca gtacttgcta catcggagga      1320
     tcaccgtgga ggagccgcac aaacgtatca atccagttca atgtactaat tgccaagaat      1380
     acggccacac caaggcatac tgcaccctta agtccgtatg tgttgtctgt agcgaacctc      1440
     atactaccgc aaactgcccc aaaaacaagg acgataagtc tgtgaagaaa tgcagtaact      1500
     gcggggaaaa acatactgca aactacagag gctgtgtggt gtacaaagaa ttgaagagcc      1560
     gcctaaacaa acgtattgcc acagcacata catacaacaa agtcaatttc tactctccgc      1620
     aaccgatttt tcaaccaccc ctaactgtcc caagcactac tccaacaatt tctttcgcta      1680
     gcgccctaaa atccggacta gaagtgcccg ccccaccgac aagaactgct cattccgaac      1740
     atacaccgac aaacatccaa caaacacaac aaagtggcat cgaagctatg atgctatccc      1800
     tacagcaaag catgaaagac ttcatgacgt tcatgcaaaa tactttgcaa gagctcatga      1860
     aaaaccaaaa tatcctgatt caacttcttg tatcttcaaa atccccataa tggcttccct      1920
     acggatatct ctgtggaacg caaatggcgt ttcacggcat acacaagagc tcacacagtt      1980
     catttacgaa aaaaacatcg acgtaatgct actatcagaa acgcacctca caaataaaaa      2040
     caattttcat ataccaggat acttgttcta tggtacaaat catccagatg gtaaagctca      2100
     tggaggcact ggaatactca tcagaaatcg cataaaacac caccacttaa acaattttga      2160
     caaaaactac ttacaatcta cgtccatagc cttacaactc aacaatggtt caacgactct      2220
     agccgcagtc tactgcccac cgcgctttcc aatctctgag gatcaattca tggaattctt      2280
     taacacacta ggtgacaggt tcatcgcagc gggtgactat aacgccaagc acacccattg      2340
     gggatctcga cttgtgtcgc caaagggtaa gcaattgtac aatgcgctta cgaagccaga      2400
     aaacaagcta gactatgtat ccccgggtaa gcctacatac tggccagcag acccaagaaa      2460
     aatcccagac ctgatcgatt ttgcaattac taaacatgtc ccccgcaaca tggtcaccgc      2520
     cgaagcacta gcagatttat catcagatca ctcacctgtt tttctaaata tgctaactcg      2580
     cccccacatc gtcgacccac cgtatagact cacaaatttt agaacaaact ggccaaggta      2640
     tcaaaagtat gtctgttcac acatagaact aacgacggca ttatctacaa aggaggatat      2700
     agacaagtca acggaaactc ttgaaaacat tttagtttcg gctgcaaagg cttcaacccc      2760
     gccagtgacg tatgcaaaac caaactacat caaaactaat cgcgaaatcg agcggctggt      2820
     attagataaa cgacgcctac gaagggattg gcagtctaat agatcaccaa ttactaagca      2880
     catgcttaag atagccacac gcaggcttac caatgctctc aaacaagagg aaaaaaacag      2940
     ccaacgttca tatatcgagc aactctctcc caccagcact aagtaccctc tttggagagc      3000
     tcacagaaac ctaaagactc caatagcgcc aattatgcca ctccgaagtc cctctggcac      3060
     ctggtttcga agtgatgaag aaagagccag tgctttcgct gaccatttac aaaatgtatt      3120
     ccgaccaaat ccctctacca acacatttat tctccctcct ttaatagcag ccaatctaga      3180
     tcctcaagaa ccctttgaat tccgaccatg tgaactagca aaggttatca aagagcaact      3240
     gaacccaaga aaatcgcctg gctacgacct aataactcca agaatgctca ttgaactccc      3300
     aaagtgtgct attcttcaca tctgcctgtt gttcaacgca atcgccaagc ttggatactt      3360
     ccctcaaaaa tggaaaaagt cgaccatagt aatgattcca aagccaggaa aagataaaac      3420
     gcagccatca tcatatagac cgataagctt actaacatgt ctttcaaagc tgtttgaaaa      3480
     aatgctactc cttcggatta gccctcatct tagaataaac aacacacttc caacacatca      3540
     atttggcttt agagaaaaac atggaaccat cgaacaggtc aaccgaatca cgtcagaaat      3600
     tcgtactgct tttgaacatc gagaatactg cacagccatt tttctagacg tcgcgcaggc      3660
     atttgacaga gtgtggctcg atggactttt gtttaaaata atcaagctgt tgccccaaaa      3720
     cacacataag ctactgaagt catacctata taacagagtg tttgcaataa gatgcgatac      3780
     aagcacttca cgcgattgcg caatcgaagc tggagtgccg caaggcagtg tactgggtcc      3840
     aatcttatac accctgtata cggcggattt ccccatagac tacaatctaa caacctccac      3900
     gttcgctgat gataccgcga tactcagtcg ctcgaaatgc ccaataaaag ccacggcact      3960
     cctatcccga cacttaacat ctgtagaacg atggcttgcc gactggagaa tttcaataaa      4020
     tgttcaaaaa tgcaagcagg ttacctttac cttaaacaaa caaacatgcc caccactggt      4080
     cttgaataac atatgcattc cacaagccga cgaggtaaca tatctgggag ttcatctgga      4140
     caggcggctc acttggcgca aacatataga agccaaatcg aaacatctta aacttaaagc      4200
     aaggaacctc cactggctca taaatgctcg ctctccactt agtctggagt tcaaagctct      4260
     tctatacaac tccgtcttaa aacctatctg gacttatggc tccgagctgt ggggcaacgc      4320
     atccagaagt aacatagaca ttattcagcg agcacagtca agaattctga gaattatcac      4380
     tggagcgccg tggtaccttc gaaacgaaaa catacacaga gacctaaaaa tcaaattagt      4440
     aatcgaagta atagctgaga aaaaaacgaa gtataacgaa aagctgacca cccatacaaa      4500
     tcccctcgca agaaaactaa tccgagtatg cagtcaaagc cggctgcacc gcaacgacct      4560
     cccagcccag caataaactt attagggcat taatgaaaaa aaaaaactat cactaagtga      4620
     aagttaatta agttagatta agatttgaac acttattgtt agtctcttaa cacaaaggga      4680
     agattcaata aataataaaa attaaaaaaa aaaaaaaaaa aaaaa                      4725
//
ID   DOC2_DM     repbase;    DNA;    INV; 4726 BP.
XX
AC   .
XX
DT   20-APR-2000 (Rel. 5.03, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   DOC2_DM is a non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag; DOC; JOCKEY clade; DOC2_DM.
XX
NM   DOC2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4726
RA   Kapitonov V.V. and Jurka J.;
RT   "DOC2_DM.";
RL   Direct Submission to Repbase Update (31-MAR-2000).
XX
DR   [1] (Consensus)
XX
CC   DOC2_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates ~10-bp target site
CC   duplications upon its integration into the genome.
CC   DOC2 is a consensus sequence of a family of recently active
CC   non-LTR retrotransposons in Drosophila melanogaster;
CC   there are ~20 DOC2 copies which are ~98% identical to the
CC   consensus sequence. DOC2_DM is 70% identical to the DOC
CC   consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(218..1276,1269..4598)
FT                 /product="DOC2_DM_1p"
FT                 /translation="MSQNDTRVQRQREQDDRRLSLQRNNAYFSYVSATSAD
FT                 SERSITHNPTSLPLPTTQERARSCSPSLLSQNPQSPNTCEISLRLPTVTST
FT                 VTTTTTATAITTTTGTVSSARSISSTQALAPTEPAIKTKTQFNGSAALSAS
FT                 QNVNKNAGSTIQTGMDRYITIKRKLSPQNYKSQQTENKSKITRGNANMLTN
FT                 KTPENTNRFELLANSTDESIQPAKSPKKVKPPPIYIREKSSSALVNKIATL
FT                 IGENSFYVIPLRKGNINETKVQTETEDSHRLLTKFLDEAGKNFYTYQLKSA
FT                 RGLQVVLKGIEATVSTTEIVEALKEKNFSAKMVMNILNKNKEPQPMFKIEL
FT                 EPERQTLKKKKKNEVQPIYKLQLLLHRRITVEEPHKRNRPVQCTNCQEYGH
FT                 TKAYCTLKSICVICSEAHSTANCHKNKEDISVKKSSNCGESHTANWRGCVV
FT                 YKELKNRLNICGESIRAQTTHIAHTPPQSGPSYTAPPPTHRTSPSVSFASA
FT                 LKSGIKSVNPITQKSTSTREEQKITTLNEQTQHISTGIETMMISLQRTLKE
FT                 FMTFMQTTMQELTASSVIQINIMGPLQISMWNANGVSRHKNELAQFLLEKN
FT                 IDVMLLSETHLTDKNNFHIPGYLFYATNHPDGKAHGGTGILIRSRIKHHLY
FT                 NRTEMDYLQSTSISMQSSSGPVTLAAVYCPPRFVVSEDQFSEFFNSLGERF
FT                 IAAGDYNAKHTHWGSRLLTPKGKQLXNALIKPRNKLDHVTPGRPTYWPADP
FT                 NKLPDLIDFAITRKIPRNNITAESLAELSSDHSPVLLTLWHRPHITERPYR
FT                 LTGNRTNWARYAKYVCTHMEPTQTVFTDEDVDRLVKSIEETLVAAAKASTP
FT                 PXTHKMTNHSKTNREIEQLVLEKRRLRREWQNHRSPTAKEHLKIATRKLTR
FT                 ALKLEEANAQLLYIKQLSPTSKRNPLWKAHKSIQPPAETVVPLRGPSGSWI
FT                 RSDEDRANAFADHLQKVFQPNPASNSFVLPVVTKSLPPINPVTFSQSEIAS
FT                 IIKDLKPKKSPGHDLVTPKMIIELPPCAVLTLCHLFNAITKLGYYPQRWKK
FT                 AVIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKAFLKQLTPYLKRRNTIP
FT                 SHQFGFRKNHGTIEQVNRITNEIRTAFEHREYCSAIFLDVAQAFDRVWLEG
FT                 LMYKITKLLPQNTHKLFESYLFKRVFSTRCNSSTSHDRVINAGVPQGSVLG
FT                 PVLYTLFTADMPTNYQLTTSTFADDTAILSRSRCPAKATEQLACHLKIVER
FT                 WFADWRIKINETKSRHVTFTLNRQTCPPCTLNNTFIPQADVVTYLGVHLDR
FT                 RLTWRRHIESKRTHMKLKAANLHWLINYNSPLSLEYKVLLYNTVLKPIWTY
FT                 GCELWGNASKTNIEIIQRAQSTILRTITGAPWYLRSESIHRDLHINLVNEE
FT                 IQMKKSKHQAKLAAHENPLAKSLTRVYSQSRLKRKDSPAQQRNPRAVSN"
XX
SQ   Sequence 4726 BP; 1641 A; 1216 C; 865 G; 1002 T; 2 other;
     gtcgctgacg tgtgaagacg tgttttcatc gagctccgta taaaatcggt tgtttttagt        60
     gaagtgaatg gttattaata taatacaaac aaataaatcg aaagcgaaag agacgctctg       120
     tgcgatgcac catcgctcga atacatattc tgtgtttgaa atagtataag caagtagttt       180
     tacacccaaa aaaaaaaaaa aaaaaaaaaa aaacactatg agccagaacg acactcgcgt       240
     tcagcgacaa cgcgagcaag acgatcgccg gctctcattg caacgaaaca acgcgtactt       300
     ctcttacgtc tccgcgactt ctgcagacag cgagcggtca atcacccata acccgacaag       360
     tttaccattg ccaacaactc aagaaagagc gcgttcttgc tctccctcac tactgtcaca       420
     aaacccccaa tctccaaaca cttgcgaaat ttctttacgc ttacctacgg tgactagtac       480
     tgtgacaaca acaaccactg caactgcaat cacaacaaca actggaacgg tatcgtcagc       540
     tcgctcaatt tcgtcgacgc aagcacttgc tcctactgag ccagcgatca aaacaaaaac       600
     acaatttaac ggttctgctg cgctatcagc aagccaaaac gtaaacaaga acgccgggtc       660
     caccatacag actggaatgg atcgctacat aacaataaaa agaaaactta gccctcaaaa       720
     ttacaaaagt caacaaacag aaaacaaatc aaaaattaca cgcggcaatg ctaacatgct       780
     cactaacaaa acgccagaaa acaccaacag atttgagctg ctggcaaatt ctactgatga       840
     aagtatacaa ccggcaaagt cacctaagaa ggtcaagcct cctccaatat acattcgcga       900
     aaaaagctca agtgcattag tgaacaaaat agccacactt ataggagaaa actcatttta       960
     cgtaataccc ttaagaaaag ggaacataaa tgaaacaaag gttcaaactg aaaccgagga      1020
     tagccatcgt ctactaacca aattcttgga tgaagcagga aaaaactttt atacatacca      1080
     actaaaaagc gcaaggggcc tacaggttgt tctcaaaggg attgaggcaa ctgtttcgac      1140
     cactgaaatc gtagaagcgc tcaaggaaaa gaactttagt gcaaaaatgg tcatgaacat      1200
     actaaacaaa aataaggaac cacaaccaat gttcaaaatc gagttggagc cagagcgcca      1260
     gacactgaaa aaaaaatgaa gttcaaccaa tctacaagtt acagctccta ctgcatcggc      1320
     gtatcactgt ggaagagcca cacaagcgca atcgcccagt gcagtgcact aactgccaag      1380
     aatatggcca cactaaggcg tactgtacac tgaaatctat ttgcgtaatc tgcagtgaag      1440
     ctcatagcac agcgaactgc cataagaaca aggaagacat ctctgtcaaa aagagcagca      1500
     actgcggtga aagtcacaca gcgaactggc gtggctgtgt agtatacaag gaactaaaga      1560
     accgccttaa catatgcgga gaatcaatac gcgctcagac cacccacatc gctcacactc      1620
     cgccacaatc gggcccgtcc tacactgcac ccccccctac acatcgtacc agtcctagcg      1680
     tctccttcgc tagtgcctta aaatcgggaa ttaaatctgt gaatccgata acacaaaagt      1740
     cgacttctac tcgggaagaa cagaaaataa ctaccttgaa cgaacaaacg cagcatatat      1800
     caactggcat tgaaacgatg atgatctcac tccagcgaac cctaaaagag tttatgacat      1860
     tcatgcaaac cacaatgcaa gagcttacag cttcttctgt catccaaatc aatataatgg      1920
     gtccacttca aatatctatg tggaacgcga atggcgtttc acggcataaa aacgaacttg      1980
     cccagttctt actcgaaaaa aatattgacg tcatgctcct ctccgagaca catctaacag      2040
     acaagaacaa cttccatatc ccaggatact tattctacgc cacaaaccat ccggacggca      2100
     aagcccatgg gggcactggt atacttatca gaagtcgcat caaacaccac ctttataaca      2160
     gaactgaaat ggactacctg caatccactt ccataagcat gcaatccagc agcggccccg      2220
     tcactctggc cgcagtctac tgcccacctc gttttgtagt ttctgaggac caattctcgg      2280
     aatttttcaa ctcactcggt gagcgattca tagcggccgg tgactacaat gccaagcata      2340
     cgcactgggg atcacgtctt ttgaccccaa agggcaaaca acttwacaac gcgctcatta      2400
     agccgcgaaa caagctcgat catgtgactc cgggtaggcc tacatactgg ccagcagatc      2460
     caaataagct accggatctc attgacttcg caataacaag aaagattcca agaaataata      2520
     ttacggccga gtcacttgca gaactatcat ctgatcactc tccagttcta cttactctct      2580
     ggcaccgacc acatataact gagcggccct acaggctgac aggcaacagg accaactggg      2640
     caaggtacgc gaaatatgtt tgtactcaca tggaaccaac ccaaacagta ttcaccgacg      2700
     aggatgttga tcgcctggtc aaatcgatag aggaaacact tgttgctgca gccaaggcct      2760
     ctacacctcc agasacacac aaaatgacaa atcatagcaa gacaaatcgt gaaatcgaac      2820
     agctagtact tgaaaaacga agactaagaa gagaatggca gaatcataga tccccaacgg      2880
     ctaaagaaca tctaaaaata gcaacacgta aactaaccag ggcacttaag cttgaggaag      2940
     ccaacgccca gcttctatat atcaaacaac tatcgcccac cagcaaaagg aaccctttgt      3000
     ggaaagcaca caaaagcata cagccaccgg cagaaacagt cgttccactg cgaggtccct      3060
     ctggaagctg gatacgcagc gacgaagata gagctaatgc gttcgccgat caccttcaga      3120
     aagtattcca accaaatcct gctagcaact catttgtcct ccctgtagta actaaaagct      3180
     tgccccctat aaatccagta acattcagcc aaagtgagat agcatctatc ataaaagatc      3240
     ttaagcccaa aaaatcacct ggacatgact tggtgacacc aaaaatgatc atagaactcc      3300
     caccgtgcgc ggttctgacc ttatgccatc tcttcaacgc tattacgaaa cttggatact      3360
     atccccaaag gtggaaaaag gcggttatag taatgattcc caagccaggc aaagacaaaa      3420
     cgcaaccctc atcctacaga ccaatcagtc tcctaacgtg tctctcgaaa ctgtttgaaa      3480
     aggcattttt aaaacaacta actccctact taaaaaggcg aaatacaata ccatcgcatc      3540
     agtttggctt tcgcaaaaat cacggaacga tcgaacaggt caatcgcatc acaaacgaaa      3600
     ttcgtaccgc ttttgagcac cgggaatact gttcagctat attcttagat gttgcacaag      3660
     catttgaccg agtctggctg gaaggactaa tgtacaagat aacaaaactg cttccccaga      3720
     acacgcacaa attgttcgaa tcttatctct tcaaaagagt gttctcaacc aggtgtaaca      3780
     gttcgacttc acacgaccgc gttatcaatg ctggagtccc ccaaggtagt gtactgggcc      3840
     ccgttcttta caccctattc acagcagaca tgcctacaaa ctatcagctc acaacctcta      3900
     cgtttgctga cgataccgca atacttagcc gatctagatg cccagcaaag gcaacagagc      3960
     aacttgcctg ccatcttaaa atagtggaaa gatggtttgc ggactggcgc attaagataa      4020
     acgagaccaa aagcagacat gtaaccttca cactgaacag acaaacctgc ccaccctgta      4080
     ccctgaacaa tacatttatc ccacaagcag acgtagtaac atatctcggc gttcacctag      4140
     atagacgcct cacctggcgg cgacatatag aatctaagag gactcatatg aagcttaaag      4200
     cagccaatct tcactggctt attaattaca actctcccct tagtctggaa tacaaagtac      4260
     tcctctacaa taccgtgctg aaacccatct ggacatacgg ctgtgaacta tggggaaacg      4320
     cttcaaaaac caacattgaa atcatacagc gagctcagtc cacgattctg cgaactatca      4380
     ctggggcacc atggtaccta cgcagcgaaa gcatccatag agacctccac ataaatcttg      4440
     tcaatgagga aattcagatg aaaaaaagta aacatcaagc aaagctcgcc gcacacgaaa      4500
     atcctctcgc gaagtcgctt acgcgagtct acagtcagag ccgactgaag cgcaaagatt      4560
     ctccagccca gcaaagaaat cctagggccg tctctaacta atacaattac ttcatattgt      4620
     aattaatata agttatataa taagatttga ataattattg ttagtctcac aaaaagagaa      4680
     gatccaataa ataacgcaat aagtttaaaa aaaaaaaaaa aaaaaa                     4726
//
ID   DOC3_DM     repbase;    DNA;    INV; 4740 BP.
XX
AC   .
XX
DT   21-JUN-2000 (Rel. 5.05, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   DOC3_DM is a non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag; DOC; JOCKEY clade; DOC3_DM.
XX
NM   DOC3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4740
RA   Kapitonov V.V. and Jurka J.;
RT   "DOC3_DM.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
DR   [1] (Consensus)
XX
CC   DOC3_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates ~10-bp target site
CC   duplications upon its integration into the genome.
CC   DOC3_DM is a consensus sequence of a family of recently active
CC   non-LTR retrotransposons in Drosophila melanogaster.
CC   There are ~50 copies of DOC3_DM in the genome; they are ~95%
CC   identical to the consensus sequence. DOC3_DM is most close to
CC   the DOC, DOC2_DM and FW_DM families, respectively.
CC   DOC3_DM encodes gag-like (ORF1: 200-1843) and reverse
CC   transcriptase
CC   (ORF2: 1843-4509) polyproteins.
CC   There is a 71% nucleotide identity between DOC3_DM and DOC
CC   (70% and 66% - for DOC2_DM and FW_DM, respectively)
CC   There is 56% (74%) identity between proteins encoded by ORF1
CC   (ORF2)
CC   in DOC3_DM and DOC.
XX
FH   Key           Location/Qualifiers
FT   CDS           221..1936
FT                 /product="DOC3_DM_1p"
FT                 /translation="MSQRELRAQRQKEQDERRLSSQRNNAYFTVVSDAREC
FT                 QIIHPVNDLAPAECKRSRSCSPMLMTARNEPERTESVSLKLSPFQTVSSSL
FT                 ATSTAITISTATAPLATTTATTTATASTSTLCSIPTAVYNSAVPTTTKARA
FT                 LTPTLESGSGQEPKQNKKLCQTGLDRYIQIKRKRSPQHKQAGNQPKINRAN
FT                 ASNDSSSNRFALLDDCEVQEQEQKKIKPPPIYIREKTSSALVNKLAAIIGE
FT                 NKFHVIPLTKGNIQETKVQTQDESSHRSVTKYLDEAGKSYYTYQLKSAKGL
FT                 QVVIKGIESSVTSSEIIAALKEKNFNAKTVINILNRNKEPQPLFKVELEPS
FT                 SQKNNKNEVHPIYKLQYLLHRRITVEEPHKRRQPVQCTNCQEYGHTKAYCT
FT                 LKSICVVCSDAHSTVNCPKNKNDSSIKLCTNCGEKHTANWRGCIVYKELKS
FT                 RLNKRVDSARDRITPTILKAMEPTTTNIPSSASHRTMPNSSFASVLKSGIQ
FT                 APTAVTSSVQHKTHQINTNKQINTQNMQQQPIGVEAIMLSMQQSMKDFMTF
FT                 MQETMQELMRNQNILIQMLVSSKIG"
FT   CDS           1939..4605
FT                 /product="DOC3_DM_2p"
FT                 /translation="MTPLTIATWNANGVSRHKLELAQFLADRNIDVMLLSE
FT                 THLTEKYNFQIPGYKFYFTNHPDGKAHGGTGILIRLRIKHHFLGNWQEDCL
FT                 QCTSINLQCHNGALTLAAVYCPPRFTISEKKFTTLFDSFGERFVAAGDWNA
FT                 KHMYWGSRIANPKGKQLYNAIIKPQHKLNYVSPGAPTYWPADPMKLPDLID
FT                 FAITKRISQSMITAEALPELSSDHCPVIFHLLHQLQHIERPCRLTSNRTNW
FT                 ARYKKYVCSHTGFSSPLETEQDIDQFAGDIESILVAAAKASTPQDNHVCST
FT                 KFNKTSRDIELLVLEKRRHRREWQEHRSPGAKSKLKAASRRLTKALKKEEA
FT                 DAQLRYIENLTPTGTKNSLWKDHRNLQAPTETVVPLRNSTGNWSRSDTDRA
FT                 RVFADHLKKVFQPNPATNSFTLPPLTASDLAPQDPVEFRPSEITKVIKEQL
FT                 KTGKSPGYDLITPKMIIELPMCAVLRICLLFNAITKIGYFPQKWKKSIIIM
FT                 IPKPGKDKTQPSSYRPISLLTCLSKLFEKVLLLRISPHLKTHNTLPSHQFG
FT                 FRAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKI
FT                 IKLLPQNIHKLLKSYLYKRVFAVRCSSSTSSDCTIEAGVPQGSVLGPILYT
FT                 LYTADIPTNYQLTISTFADDTAILSRSRCPVKATMQLARHLTCVEHWLANW
FT                 RIRVNEGKCKQVTFTLNKQTCPPLVMNHTRIPQADNVTYLGIHLDKRLTWR
FT                 KHIEAKTTHLRLKARDLHWLINVRSPLSLEYKVLLYNSVLKPIWTYGSELW
FT                 GNASRSNIDIVQRAQSRILRIITGAPWYLRNENIHRDLQIKLVIETIAEKK
FT                 VKYNEKLASHPNPLARKLIRVCSQSRLHRNDQPAQR"
XX
SQ   Sequence 4740 BP; 1639 A; 1175 C; 906 G; 1020 T; 0 other;
     tggcatttca agtgaacaga cgtgttttca tcgagctccg tataaaatca cttgatttta        60
     gtgaagtaaa tagttaataa cataaaataa ataaataaat cgaaagcgaa agagacgcta       120
     ttggcaatgt taaattgcta tactacaaaa ttttctgtgt gtggaataat aaagtaaaac       180
     taaaaaacaa atagacaacg aacgaatcga tcgttctaaa atgagccaac gcgaattgcg       240
     cgctcagcgg caaaaagagc aagacgagcg ccgactctct tcgcagcgga acaatgcata       300
     cttcaccgtc gtgtctgacg cccgcgagtg ccaaatcatc cacccggtca atgacctagc       360
     acctgcagaa tgcaaacgat cgcggtcttg ctcaccaatg cttatgactg cacgaaatga       420
     acccgaacgc actgagagcg tctctctcaa gctctcccca ttccaaacgg tgtcaagttc       480
     tttagctacc agtacagcaa tcacgatatc tactgcaact gcacctttag caacaacaac       540
     tgcaacaaca actgcaacag catcaacatc aactctatgc tcaataccga cagcggtgta       600
     caattccgct gtaccaacaa caacgaaagc aagagcactc acaccgactc ttgaaagcgg       660
     aagcggacaa gaaccaaaac aaaacaaaaa actttgtcaa acagggctgg atcgctacat       720
     ccaaataaag cgaaagcgaa gcccacaaca caagcaggct ggtaatcagc cgaaaataaa       780
     tcgcgccaac gcctccaatg actcaagttc aaataggttt gcactattgg atgactgcga       840
     agtgcaggag caggagcaga agaagataaa gccgccacca atatatatac gtgagaaaac       900
     ctcaagtgcg ctggttaaca aactagctgc aattatcgga gaaaacaagt tccatgttat       960
     acctcttact aagggcaaca tacaagaaac gaaagtgcag actcaggatg agtctagcca      1020
     ccgatcagtg accaagtacc tggacgaagc tgggaagagt tactatacct accagctgaa      1080
     aagtgccaaa ggattgcagg ttgtcattaa aggaatagag tcatcagtga cctcatccga      1140
     aattatcgcg gcactaaagg agaagaactt caacgccaaa acggtgatca acattctcaa      1200
     caggaacaaa gagccgcagc cactctttaa agtcgaactg gagccatcga gtcagaaaaa      1260
     caacaaaaat gaagtacatc ctatatataa gctacagtat ttactgcacc gaaggataac      1320
     cgtagaagag ccacacaagc gcaggcaacc tgtgcagtgc accaactgcc aagaatatgg      1380
     acacaccaaa gcgtactgca ccctaaaatc catctgcgtc gtttgcagcg atgcccacag      1440
     tactgtaaac tgtcctaaga ataaaaacga cagttcaatt aagttatgca ccaactgtgg      1500
     cgaaaaacac acagccaact ggcgaggatg cattgtttac aaggaactca agagtcgcct      1560
     aaacaaacga gtggattcag ctcgagatcg tatcacacca acaattctca aagcaatgga      1620
     accgactacg actaacatcc cttcgtctgc cagccaccga acaatgccaa attcttcctt      1680
     tgcaagtgta ctaaaatcag ggatccaagc accaacagca gtcacctcca gcgtccagca      1740
     taaaactcac caaataaaca caaataaaca aataaacaca cagaacatgc aacagcagcc      1800
     aattggcgtt gaagcgatta tgctttcgat gcagcaaagt atgaaagact tcatgacctt      1860
     catgcaagaa actatgcaag agcttatgag gaaccaaaac atccttattc aaatgctcgt      1920
     ttcttccaaa ataggataat gactccctta acaatagcta cctggaacgc taatggcgtt      1980
     tcgcggcaca agctagaact tgctcagttc ttagccgaca gaaacattga cgttatgcta      2040
     ctctcagaga ctcaccttac cgaaaagtac aacttccaaa taccaggata taaattttac      2100
     tttacgaatc acccggatgg caaggcccat ggaggcactg gcatactaat acgattgcga      2160
     attaagcacc actttcttgg taattggcaa gaagactgct tacaatgtac ctctataaac      2220
     ctccaatgcc ataacggtgc tctcactctg gctgctgtct attgcccacc tcgcttcaca      2280
     atctctgaga aaaaattcac aacacttttt gactcgtttg gtgaaaggtt tgttgcagct      2340
     ggcgattgga atgccaagca catgtactgg ggatctcgga tagcgaaccc taaaggaaaa      2400
     cagctgtaca acgcaatcat caaaccgcaa cacaaactta actatgtttc cccgggagcg      2460
     cctacatact ggccagcaga tcccatgaag cttccagatt tgattgactt tgccatcaca      2520
     aaaaggatat cccaatcaat gattacagct gaggcacttc cagaactctc atctgatcac      2580
     tgtccggtaa tctttcatct tttgcaccaa ctacaacaca tcgagcgacc gtgtaggctt      2640
     acaagcaata ggaccaactg ggcgaggtac aaaaaatatg tttgttccca taccggcttt      2700
     tctagccccc tggaaaccga gcaagacatt gatcagtttg ctggtgatat agaatcaata      2760
     cttgtcgcag cagcaaaagc gtcaactcca caagacaacc atgtatgcag cacaaagttt      2820
     aacaagacaa gtagagatat tgaactgctt gtgcttgaaa aacgacgaca tcgaagggag      2880
     tggcaggagc acagatcacc tggcgcaaag agtaaattaa aagcagcttc tcgcagactt      2940
     accaaagcgc ttaagaaaga agaagcggac gcacaactaa gatacatcga gaatctcacg      3000
     cccacaggca caaagaactc gttgtggaaa gaccacagga acctacaggc accaacagaa      3060
     acggttgtac ctctccgtaa ctctaccgga aactggtctc gcagtgacac ggacagagca      3120
     agagtcttcg ctgatcatct taaaaaagta tttcaaccaa atccagccac taactcattt      3180
     actctcccgc ctttaactgc atctgactta gcaccacaag atcctgtaga atttcggcca      3240
     agcgagataa cgaaagtcat taaagagcaa ctgaaaactg gaaaatcgcc tggctacgac      3300
     ttaataaccc cgaaaatgat catcgagctc ccaatgtgtg cagttctgcg aatctgcttg      3360
     ctcttcaacg caattactaa aattggatac ttccctcaaa agtggaagaa atcaattata      3420
     atcatgatcc ctaagcctgg gaaagacaaa acacagccat catcatacag gccaataagc      3480
     ttacttactt gtctatccaa gttatttgaa aaagtgctgc tgctacgcat cagcccccac      3540
     ctcaaaacac acaacacact cccatcgcac caatttgggt ttcgggcaaa acatggagcc      3600
     attgaacagg ttaaccgcat cacaacagaa attcgcactg cctttgaaca ccgtgaatac      3660
     tgcacagctc tcttcttaga cgttgcacaa gcattcgata gagtatggct ggatggactt      3720
     atgtttaaaa taatcaaact gctgcctcaa aacatacata agcttctaaa gtcttaccta      3780
     tataaaagag tgttcgcggt cagatgcagt tcaagcactt caagcgattg tactatagaa      3840
     gccggagtgc ctcaaggaag tgttctaggc ccaattctat acaccctata cacggcggac      3900
     atcccaacaa actaccagct aacgatatcc acattcgctg atgacactgc aatactaagt      3960
     cgatccagat gcccagtaaa agctacgatg caactagcac gccatctaac ttgtgtagaa      4020
     cattggcttg caaattggcg catacgagta aacgaaggaa agtgcaaaca ggtaacattt      4080
     accctaaaca aacaaacctg cccgcccttg gtaatgaacc acacgcgcat cccacaagcc      4140
     gataacgtaa catacttagg tattcatctg gacaagcggc tcacctggcg gaaacacata      4200
     gaggccaaga cgacgcacct cagactaaaa gcaagggatc tacactggct tataaacgtt      4260
     cgctctcccc taagcttgga gtacaaagtc ctcttatata actccgtttt aaaacccata      4320
     tggacctatg gctccgagct atggggcaac gcatcgagaa gcaacatcga catagtacag      4380
     cgagcacagt ctaggattct gagaatcatt actggagctc catggtatct tcggaacgag      4440
     aatatacaca gagacttaca aataaaactt gtcattgaga caatagcaga gaagaaagta      4500
     aaatacaatg aaaaactagc ctcacatcca aatcctcttg caagaaaact tattcgagta      4560
     tgcagccaaa gccgactgca ccggaacgac caaccagccc agcgttaaat ttgttaggcc      4620
     acacagcacg aatcatttca taaaatgata tttagttagt ttagaataag atttgaaaac      4680
     ttattgttag tctcttaagt aaaagggaag attcaataaa taagcaaaac atgaaaaaaa      4740
//
ID   DOC4_DM     repbase;    DNA;    INV; 2791 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   DOC4_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; ORF2; JOCKEY clade; DOC4_DM.
XX
NM   DOC4_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2791
RA   Kapitonov V.V. and Jurka J.;
RT   "DOC4_DM, a family of Jockey-like non-LTR retrotransposons from
RT   D. melanogaster.";
RL   Repbase Reports 2(10), 3-3 (2002).
XX
DR   [1] (Consensus)
XX
CC   DOC4_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   DOC4_DM is a separate family. Members of this family are ~94%
CC   identical to the DOC4_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. DOC4_DM is <70%
CC   identical to reported retrotransposons. The sequence is
CC   incomplete.
CC   There are ~20 copies of DOC4_DM present in the sequenced portion
CC   the D. melanogaster genome. The amount of sequence data is not
CC   sufficient for a complete reconstruction of the ORF2 protein
CC   encoded by DOC4_DM. The ~400-aa internal portion of ORF2p is not
CC   reconstructed.
CC   ORF1p (positions 1-1743):
CC   QNEIREQRQREQDERRLSSIKNNAYFSFVSTETLKPSQDQRAHSCSPSLPSTVPKSWSEECASPMPQPTT
CC   NYTQTPLTIVAKPPLLSLAAVTTSTVASLTTAIASTTTLTATVSSTQTIQSTTSRAFALQAKQLTATITD
CC   LRESKSNPSGRPNSVMQTGMDRYVFVKRKRSPQRTTGNRAKINCGSETKTTTTNNKNMFALLAENASEEA
CC   NKTTDSVSQKPKPPPIYIQEITTNALANKIVQLIANNNFHVIPLRRGKIQETKLQVKTEDQFHAVSKFLN
CC   ENGKKYYTYQLKSSKGLQVVLKGIEPDVTPNEVANALHEKGFNVKSVINILNKDKKPQPLFKVELDPTSQ
CC   TLKRNEVHPIYNLQFLLHRKITVEEPHKRNGPVQCSNCQEYGHTKTYCTLPSVCVACGDLHESGTCPANK
CC   LDPNSKKCGNCGENHTANYRGCPVYKDLKSRMNKRIASARSTNNTQKIWYPKNVWYPPNRFLTFSSPTPN
CC   CHPLPPVSTIPGVSFASALKSGTEGPASTTEFSKAPQPRAVPDDLQQPTSAIEKIMLSFQATMTEFMSFM
CC   RTTMQDLTCALVQVLASQHSK.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1743,1715..2083,2071..2790)
FT                 /product="DOC4_DM_1p"
FT                 /translation="QNEIREQRQREQDERRLSSIKNNAYFSFVSTETLKPS
FT                 QDQRAHSCSPSLPSTVPKSWSEECASPMPQPTTNYTQTPLTIVAKPPLLSL
FT                 AAVTTSTVASLTTAIASTTTLTATVSSTQTIQSTTSRAFALQAKQLTATIT
FT                 DLRESKSNPSGRPNSVMQTGMDRYVFVKRKRSPQRTTGNRAKINCGSETKT
FT                 TTTNNKNMFALLAENASEEANKTTDSVSQKPKPPPIYIQEITTNALANKIV
FT                 QLIANNNFHVIPLRRGKIQETKLQVKTEDQFHAVSKFLNENGKKYYTYQLK
FT                 SSKGLQVVLKGIEPDVTPNEVANALHEKGFNVKSVINILNKDKKPQPLFKV
FT                 ELDPTSQTLKRNEVHPIYNLQFLLHRKITVEEPHKRNGPVQCSNCQEYGHT
FT                 KTYCTLPSVCVACGDLHESGTCPANKLDPNSKKCGNCGENHTANYRGCPVY
FT                 KDLKSRMNKRIASARSTNNTQKIWYPKNVWYPPNRFLTFSSPTPNCHPLPP
FT                 VSTIPGVSFASALKSGTEGPASTTEFSKAPQPRAVPDDLQQPTSAIEKIML
FT                 SFQATMTEFMSFMRTTMQDLTCALVQVLASQHSKYKYLHLNIQNKKMSSLR
FT                 ICLWNANGVSRHKLDLARFLKDKEVDIMLLSETHLTSSRIKHNFLDRFEKN
FT                 YLQATSVVVXSSGGNITLAAVYCPPRFSITENQFMEFFCFPLELLNXVQXE
FT                 XFSLXLLTVRCNANTSEDMRRGVPQGSVXGPTLYLLYTADIPTSDRTTLST
FT                 FADDTAILSRSKCPLQASAHLAGHLTVVENWLANWRIAINEQKCKHVTFTL
FT                 NRRSCPPLTLNNVQIPRSDSAIYLGVHLDRRLTWRKHIEAKKTHLKLKASR
FT                 FHWLINXRSPLSLDYKVLLYNTVLKPIWTYGCQLWGNACNSNIEIIQRAQS
FT                 KILRTITGAPWYIRNANIHQDLRIPVVKTEIVQQKAKYLK"
XX
SQ   Sequence 2791 BP; 909 A; 697 C; 517 G; 661 T; 7 other;
     caaaacgaaa ttcgtgagca acgtcaacgt gaacaagacg agcgtcggct ctcttcaatc        60
     aaaaacaacg cgtatttctc gttcgtttct acggaaacgc tcaagccctc ccaagaccag       120
     agagcgcact cttgctctcc gtcgttgcca agcacagttc caaaatcttg gagcgaagag       180
     tgcgcttccc caatgccgca accaacaaca aattacacac aaactccgtt aaccattgta       240
     gccaagcctc ctctcttaag cctagctgca gtaactacca gcacggttgc ctctctcaca       300
     actgcaatcg catcgacaac aacattaacc gcaacagtct cttcaactca aacgattcag       360
     tcaacgacct cacgggcttt tgcattgcaa gcaaaacaat taacagctac aattaccgat       420
     ttacgtgagt caaagagcaa tccaagtggc cgcccgaatt cggtcatgca gactggtatg       480
     gatcgctacg tttttgtaaa acgtaaacgg agtccgcaac gcacaacagg taatagagcc       540
     aaaataaatt gtggtagcga aacaaaaact actactacca acaataaaaa catgtttgca       600
     ctgctagcag aaaacgcaag cgaggaagct aataaaacga cagatagtgt atctcaaaaa       660
     ccaaagcctc caccaatata catccaagag attactacga acgcactagc aaataaaata       720
     gttcagctta tcgcaaacaa caattttcac gttatacctc taagaagagg aaaaattcaa       780
     gaaactaagc ttcaggttaa aaccgaagac cagtttcatg cggtttcgaa gtttttaaac       840
     gaaaacggca aaaaatatta cacgtaccaa ctcaaaagca gtaaagggct gcaagtggta       900
     ctaaaaggca ttgagcctga tgtcacaccc aatgaagttg cgaatgcact tcacgaaaag       960
     ggctttaacg ttaaatcagt tattaatatt cttaataaag ataagaagcc ccaaccgctc      1020
     ttcaaggtcg agctagaccc aactagccaa acactaaaga gaaatgaagt gcacccaatt      1080
     tacaatctcc aattcttatt acaccgtaaa attactgtag aagaaccaca taagcgtaat      1140
     ggtccagtac aatgctccaa ctgccaagaa tatggccaca ccaagacata ttgtaccctt      1200
     ccttccgttt gcgtcgcctg cggggatctg cacgaatctg gcacttgccc ggctaataaa      1260
     cttgatccaa attcaaaaaa atgtggaaat tgtggtgaaa accacacagc taattaccgg      1320
     ggatgccctg tctacaaaga tcttaaaagt cgcatgaaca aacgaattgc ttcggctcgt      1380
     agtactaata atacccaaaa aatatggtac cccaaaaatg tatggtaccc tcccaatcgt      1440
     ttcctgacat tttcttctcc aacgccaaat tgtcatcctc ttcctccagt aagcaccata      1500
     ccgggtgttt catttgctag tgccctaaaa tcgggaacgg aaggtcctgc gtccacaaca      1560
     gagttctcaa aagcgccgca acctcgagcc gtgccagacg acctgcaaca acccacaagt      1620
     gccatcgaaa aaattatgtt atcattccaa gcaacgatga cggaatttat gtcgttcatg      1680
     agaacaacaa tgcaggatct tacgtgtgcc ttagtacaag tacttgcatc tcaacattca      1740
     aaataaaaaa atgtcctccc ttcgtatatg tttgtggaat gcgaatggcg tctcccgcca      1800
     caaacttgat ctcgctaggt tcttgaaaga taaagaagtt gatattatgt tgctctcaga      1860
     gacccatcta accagcagtc gcattaaaca taacttcctt gatcgttttg agaaaaacta      1920
     cctacaagct acatctgtgg tggtcyattc tagtggcggt aatataactc tggccgccgt      1980
     ctactgtccg ccccgtttct caattactga gaatcaattt atggaattct tttgctttcc      2040
     tttagagctt cttaacgmtg tacaahdtga adacttctca ctgtaaggtg caatgcgaat      2100
     acctccgagg acatgcgaag gggagtccct cagggtagcg ttyttggtcc gacactgtat      2160
     ctcctataca cagctgacat ccctacaagt gatcgaacaa cactatcaac ttttgctgat      2220
     gacaccgcaa ttctcagccg atcgaaatgc cctctgcaag catcagcgca cctggctggt      2280
     cacctaactg ttgtggagaa ttggctggct aactggcgta ttgcaatcaa cgagcagaaa      2340
     tgcaaacatg tcacatttac gcttaatagg cgtagctgtc ccccattaac tctaaataac      2400
     gtccaaattc cacgaagtga ttcagccatt tacctcggag ttcatctaga cagaagatta      2460
     acttggcgta agcacattga agccaagaaa acgcatttga agctgaaagc cagtaggttt      2520
     cactggctta tcaactyacg ctctccacta agtttggact acaaggtgct gttatacaac      2580
     acagttctaa aaccaatatg gacatatgga tgtcaactat ggggcaatgc atgcaacagc      2640
     aacattgaaa taatacaacg agcacaatca aaaatcctgc gaacaataac tggtgcgcct      2700
     tggtacatcc ggaacgcgaa catccaccag gacctacgga ttccagttgt aaaaactgaa      2760
     attgtccagc agaaggctaa atacctaaag c                                     2791
//
ID   DOC5_DM     repbase;    DNA;    INV; 4682 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   DOC5_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; ORF2; JOCKEY clade; Porto-1; DOC5_DM.
XX
NM   DOC5_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   4578-4089
RA   Coelho A.P., Nurminsky D., Hartl D. and Sunkel E.C.;
RT   "Identification of Porto-1, a new repeated sequence that
RT   localizes close to the centromere of chromosome 2 of Drosophila
RT   melanogaster.";
RL   Chromosoma 105(4), 211-222 (1996).
XX
RN   [2]
RP   1-4682
RA   Kapitonov V.V. and Jurka J.;
RT   "DOC5_DM, a family of Jockey-like non-LTR retrotransposons from
RT   D. melanogaster.";
RL   Repbase Reports 2(10), 4-4 (2002).
XX
DR   [2] (Consensus)
XX
CC   DOC5_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   DOC5_DM is a separate family. Members of this family are ~94%
CC   identical to the DOC5_DM consensus sequence. Therefore,
CC   this family was active a few million years ago.
CC   A portion of DOC5_DM (positions 4578-4089) was described
CC   previously
CC   as the Porto-1 repeat [1]. DOC5_DM is less than 70%
CC   identical to reported retrotransposons. The sequence is
CC   incomplete,
CC   There are ~30 copies of DOC5_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome. The amount of sequence data is not
CC   enough for a complete reconstruction of the ORF2 protein
CC   encoded by DOC5_DM. ORF2 in the consensus sequence is corrupted
CC   by
CC   mutations accumulated in DOC5_DM elements during their immobile
CC   vacation in the genome.
CC   ORF1p (positions 211-1947):
CC   MSASDAQNQKRELQAKQNKNNSYLSFTHISNYTNNYQSLHPQSDGRARSCSPALERPNNYSQHRSAECAP
CC   NSSARTPTTTSAIPINTHSTLPLTAVTLSALPLWTLPLSATSETNTTTVATIATTTTVFYVSMPICSSSA
CC   NIKTPSSIPASTKINKTQSSLPNQQNLKLYRDNQSPNSSKDLLNNNKKQRNKAQTATQKTLKKYWLAEPH
CC   SSNRFELLAQDDEDENQTDNGTNATINTQMQIEHKSAKPPPIYVQNVENIYALTTALNSLEETRYELKAL
CC   SSNEIKIQPLETTHYHNILRLLKDKSTKYYTFRPKDQRGFKVILRNVHHATDKDDIINELAQQGHEVINL
CC   HNIQRYDSKQPLPLFSIELKMKDNNKDIYKIEHLLHCKVIFEPPRPKRTLPQCTNCQKYGHTKNYCTKDP
CC   TCVKCAGKHSSSSCTINTRSDRTSIKCALCSENHTANYKGCMVYKALQIQKYPTLRKKEIPVTETTHQTT
CC   QHSTTNNVVSLKTPALSYAEVLNKNQVTSHQTNSTPQPTIVPDIQPASTQLSQTAQNDFDELKQMMKQLI
CC   AQMTNMMNIFTLLLFKLDK
CC   C-end of ORF2p (positions 2937-4427):
CC   NRLQYYLSKLETTLSTNYSLWKATKKFTNSTIHKPPIKRNNNTWARSNKEKADTIYNDNAELPRQITNLN
CC   CAIKTITKAEIKSHIKQIKNKKAPGYDLIGGKILKELPDAIITYIRNLFNGILRLQYFPITWKVGQIKAI
CC   PKPNKNANTVSSYRPISLLPVLSKVFEKVLFEKLLFNRIEPILKQKNIIPPHQFGFRKQHSTVQQVHRVI
CC   NKITDDFDKKKFCYAVYLDIAKAFDKVWHKGLLHKLRNILPYNLYTILQSYITDRYFYIKYDNECSDIMP
CC   VSAGVPQGSVLGPILYLIYTSDIPAPTTPGSMIATFADDTVLMSSSACEKTAASTLQQIMTQTVSWFERW
CC   GIEINKDKTQQVIYTKRQPKNFAIKINDNQILLHPYAKYLGLTIDSKLTWKQHILNKRNEIKNKFRQLNW
CC   LIGKHSKLELHNKIAIYKAIIKPIWTYGIELWGTASKSHLQLIQRTQSKMLRIITKAEWYIRNEDIHNDL
CC   NIETVNETIKKKQQKTHKSTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..1947
FT                 /product="DOC5_DM_1p"
FT                 /translation="MSASDAQNQKRELQAKQNKNNSYLSFTHISNYTNNYQ
FT                 SLHPQSDGRARSCSPALERPNNYSQHRSAECAPNSSARTPTTTSAIPINTH
FT                 STLPLTAVTLSALPLWTLPLSATSETNTTTVATIATTTTVFYVSMPICSSS
FT                 ANIKTPSSIPASTKINKTQSSLPNQQNLKLYRDNQSPNSSKDLLNNNKKQR
FT                 NKAQTATQKTLKKYWLAEPHSSNRFELLAQDDEDENQTDNGTNATINTQMQ
FT                 IEHKSAKPPPIYVQNVENIYALTTALNSLEETRYELKALSSNEIKIQPLET
FT                 THYHNILRLLKDKSTKYYTFRPKDQRGFKVILRNVHHATDKDDIINELAQQ
FT                 GHEVINLHNIQRYDSKQPLPLFSIELKMKDNNKDIYKIEHLLHCKVIFEPP
FT                 RPKRTLPQCTNCQKYGHTKNYCTKDPTCVKCAGKHSSSSCTINTRSDRTSI
FT                 KCALCSENHTANYKGCMVYKALQIQKYPTLRKKEIPVTETTHQTTQHSTTN
FT                 NVVSLKTPALSYAEVLNKNQVTSHQTNSTPQPTIVPDIQPASTQLSQTAQN
FT                 DFDELKQMMKQLIAQMTNMMNIFTLLLFKLDK"
FT   CDS           join(1913..2428,2362..2811,2763..4469)
FT                 /product="DOC5_DM_2p"
FT                 /translation="TFSRFYYSNLTNKHLTIAIWNANGLSRHLHELKTFLN
FT                 EKQIEVMLISKTHLTEKTYYINIPNYNISSTYHPDGKAHGGTAVIIKKSIK
FT                 CIELDGFKKDYIQATTKSTSDTTGPINISAVYCPPKFNNTKDQYLDFLKSL
FT                 GNRYLAGGDYNAKHTTWGVQTYHCKGDVNCMKQCQTHNLGGPDLPLQRGRQ
FT                 LYEAIRNNNSRALSTGEPTYWPTDTNKLLDLIDFCITRNITCENLTIKSCL
FT                 DLFPDHSPILLTLHGGLEENSNDSPLFKDKTNWNMFRDILEQNRNINISLK
FT                 TNNALDSGVAYLNENIIDAATQSTPSIKMKEHHRCSNAIDTIYKNEMRKIR
FT                 QKRTLRRIRQRTRHPEDKNKLNRATDELKRTLREDKDNRLQYYLSKLETTL
FT                 STNYSLWKATKKFTNSTIHKPPIKRNNNTWARSNKEKADTIYNDNAELPRQ
FT                 ITNLNCAIKTITKAEIKSHIKQIKNKKAPGYDLIGGKILKELPDAIITYIR
FT                 NLFNGILRLQYFPITWKVGQIKAIPKPNKNANTVSSYRPISLLPVLSKVFE
FT                 KVLFEKLLFNRIEPILKQKNIIPPHQFGFRKQHSTVQQVHRVINKITDDFD
FT                 KKKFCYAVYLDIAKAFDKVWHKGLLHKLRNILPYNLYTILQSYITDRYFYI
FT                 KYDNECSDIMPVSAGVPQGSVLGPILYLIYTSDIPAPTTPGSMIATFADDT
FT                 VLMSSSACEKTAASTLQQIMTQTVSWFERWGIEINKDKTQQVIYTKRQPKN
FT                 FAIKINDNQILLHPYAKYLGLTIDSKLTWKQHILNKRNEIKNKFRQLNWLI
FT                 GKHSKLELHNKIAIYKAIIKPIWTYGIELWGTASKSHLQLIQRTQSKMLRI
FT                 ITKAEWYIRNEDIHNDLNIETVNETIKKKQQKTHKSTT"
XX
SQ   Sequence 4682 BP; 1899 A; 1057 C; 676 G; 1050 T; 0 other;
     catctgaact tcaaccccga cggacgtgtt tttaacagag gtccagttaa tatcgaagtt        60
     taagtgcaaa attcaagccc aagtgcaacc atcatataaa agcgaaaaga cgctaacaca       120
     tatttatatg tgttaaaaac cttatgtctc tctgtgaaca agataaacaa aaaaaaaaaa       180
     acaagtgaaa acaataaaca aaacaaaaat atgagcgcat ccgacgctca aaatcagaag       240
     cgagagcttc aagctaaaca aaacaaaaac aactcctacc tctcattcac ccacatatca       300
     aactacacaa acaattatca aagcttacac cctcaaagtg atggaagagc gcgatcttgc       360
     tctccagcat tggagagacc caacaattac tctcagcaca ggagcgcaga atgcgcgcca       420
     aattcatctg cacgtacacc aacaacaact tccgctatac caataaacac acactcaact       480
     ctcccgctca cagcagttac gctctcagct ctcccactct ggactcttcc gctctcagca       540
     acttcagaaa ccaacaccac aactgtagca actatagcaa caacaactac agttttctat       600
     gtttcaatgc cgatttgctc ttcttcagcg aatattaaaa cgcccagctc aatacccgcc       660
     tcaacaaaaa taaacaaaac tcaatcctct ctcccaaacc aacaaaactt aaaactttac       720
     cgagacaatc agtctccaaa cagttccaaa gatctcttaa ataacaacaa gaaacagagg       780
     aataaagctc aaaccgctac ccaaaaaaca ctcaaaaagt actggctagc cgagccacac       840
     tcaagcaacc gttttgagct attagcacaa gatgatgaag acgaaaacca aactgacaat       900
     gggacaaatg caactataaa tacgcaaatg caaattgaac acaaaagtgc aaaaccgccc       960
     cctatatatg ttcaaaatgt tgaaaacata tacgcactaa ctactgcttt aaattcattg      1020
     gaagaaacac gatatgaact aaaagcacta tcaagtaatg aaataaaaat acagccacta      1080
     gaaactactc actatcacaa catattaaga ctattaaaag ataaatcgac caaatactac      1140
     accttcagac caaaagacca gagagggttt aaggtaattc ttcgtaacgt ccatcatgct      1200
     acagacaaag acgatattat caatgaacta gctcagcaag ggcatgaagt tataaattta      1260
     cacaacatcc agcgctacga ctccaaacaa ccattgcctc tattctctat tgaactcaaa      1320
     atgaaagaca ataataaaga catttataaa attgagcacc tacttcattg caaagtaatc      1380
     tttgagccac cgcgaccaaa gcgaacactt cctcaatgta caaactgcca aaaatatgga      1440
     catacaaaaa attactgcac caaagaccct acttgcgtaa agtgcgctgg aaaacacagc      1500
     tcatcatcct gtactattaa cacaagatcg gacagaacaa gcattaaatg tgcactatgc      1560
     agtgaaaacc acactgcaaa ctataaaggt tgtatggtgt acaaagcact gcaaattcaa      1620
     aaatacccaa ctcttcggaa aaaagaaata cctgtaacag aaacaacaca tcaaacgaca      1680
     caacacagta caacaaataa cgtagtaagc ttaaagacgc cagctttatc ctatgccgaa      1740
     gtcttaaata aaaaccaagt aactagccat caaaccaact caacacctca acctactatt      1800
     gtacctgata tacagcctgc ttcaactcaa ttaagccaaa ctgcacaaaa tgattttgac      1860
     gaacttaaac aaatgatgaa acaattaata gcccaaatga caaatatgat gaacattttc      1920
     acgcttttat tattcaaact tgacaaataa acacctaaca atcgccatct ggaatgctaa      1980
     cggactttca cgccatttac atgaactaaa aacattctta aatgaaaagc aaattgaggt      2040
     catgctcatt tctaaaacac acttaactga gaaaacctat tatataaaca tacctaacta      2100
     taatatttct tctacttatc acccggacgg taaggcccat ggtggtactg cagtaataat      2160
     taaaaaaagc atcaagtgca tagagctcga tggattcaaa aaggactaca tacaggctac      2220
     tactaaatcg acctcagaca caacgggtcc aataaatata tctgcagttt attgcccacc      2280
     taaatttaat aatacaaaag accaatacct cgatttccta aaatcactgg gaaatcggta      2340
     cttggcagga ggtgactata atgccaaaca cacaacttgg ggggtccaga cttaccactg      2400
     caaaggggac gtcaactgta tgaagcaata agaaacaata atagccgtgc tctaagcaca      2460
     ggagagccga cttactggcc aactgacaca aataaactac tggatttaat tgacttctgc      2520
     attacaagaa atataacatg cgagaaccta acaataaaat catgcctaga cctctttccc      2580
     gaccattccc caatattact tacattacat ggtgggctag aagaaaacag caacgactct      2640
     cctttattta aagacaaaac aaattggaac atgtttcgcg acattttgga acagaatagg      2700
     aatataaata tctctctaaa gacaaacaac gcactagact ccggagtagc atatttaaat      2760
     gagaacatca tagatgcagc aacgcaatcg acaccatcta taaaaatgaa atgagaaaaa      2820
     tcaggcaaaa gcgtacactt aggaggatac ggcaaaggac taggcatcca gaagataaaa      2880
     acaaactaaa tagagcaaca gacgagctca agagaactct cagggaagac aaagataacc      2940
     gacttcaata ctaccttagc aaacttgaga ctaccttatc tacaaattat tccctgtgga      3000
     aagcgaccaa aaaatttacg aactcaacta tacacaagcc acctataaaa agaaacaaca      3060
     acacatgggc aagatcaaac aaagaaaaag cagacaccat ttacaacgac aatgctgagc      3120
     ttccaagaca aatcaccaac ttaaattgtg caattaaaac tataacaaag gcagaaatta      3180
     aatctcacat aaaacaaatt aaaaacaaga aagcccccgg atatgattta atcggaggaa      3240
     aaattcttaa agaactaccg gacgctataa tcacctatat tagaaacttg tttaacggaa      3300
     tccttcgatt gcagtacttt cccataactt ggaaggtagg ccaaattaaa gcaattccaa      3360
     aaccaaacaa aaacgccaat actgtaagct cgtacagacc aatcagctta ttacctgtcc      3420
     tctcaaaagt atttgaaaaa gtcctatttg aaaaactcct atttaataga atcgagccaa      3480
     tcctaaaaca aaaaaatata atacctcctc accaattcgg ctttcggaag cagcactcga      3540
     ctgtccaaca ggtccatcga gtaattaaca aaataacaga cgattttgac aaaaagaaat      3600
     tttgctatgc tgtgtacttg gacattgcta aagcatttga caaagtatgg cacaaaggac      3660
     tgctgcataa gctaagaaat atactaccat ataacctata taccattctt caaagctata      3720
     taacggacag atatttctat attaaatacg acaatgaatg ctcagatatt atgccagtgt      3780
     cagcgggtgt tccccaaggt agtgtgcttg ggcccatatt atacctgatt tatacctccg      3840
     atattccagc gccaactacc cctggatcaa tgattgcgac gttcgcagac gatactgtgt      3900
     taatgtcgtc aagcgcgtgc gaaaaaacag ctgcaagtac actacaacaa atcatgacac      3960
     aaacagtatc ctggtttgag agatggggta tcgagataaa taaagacaaa actcaacaag      4020
     taatatacac aaaacgacaa cccaaaaact tcgcaattaa aatcaatgac aatcaaatat      4080
     tattacaccc atatgccaag taccttggac taactattga ctcaaaacta acatggaaac      4140
     agcacattct aaataaacga aatgaaataa aaaacaaatt tcgacaactt aactggctaa      4200
     taggaaaaca ctcaaaacta gaattacata ataaaatagc aatatacaag gcgataataa      4260
     aaccaatatg gacgtatgga atagaactct ggggaactgc cagtaaatcc cacttacagc      4320
     taattcagcg aacgcaatca aaaatgctca gaataatcac aaaagccgaa tggtacatta      4380
     gaaacgaaga tatacataat gatttaaaca tagaaacagt caacgaaact attaaaaaaa      4440
     agcagcaaaa aacacacaaa tcaactactt agccaccaaa actcaaactt gagacaaata      4500
     ccgatgacag agttggaacc aagaagatta aaacgcagaa ctccaacaga attaaactat      4560
     taaattatta atgtattagc gtatccttgc actgggaagg gccgcttctt ttctttttca      4620
     catctagtca accaattact tattgttatt ttttaaaaaa cagattgtaa tttaaagaaa      4680
     aa                                                                     4682
//
ID   DOC6_DM     repbase;    DNA;    INV; 4222 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   DOC6_DM is a non-LTR retrotransposon - a consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; DOC6_DM;
KW   JOCKEY clade; ORF1; ORF2; Strider; endonuclease;
KW   reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1482-4222
RA   Kronmiller A.B., Svirskas R., Carlson J., Patel P.S., Wan K.,
RA   Pacleb J., Champe M., Kaminker J., Rubin G. et al.;
RT   "Drosophila melanogaster transposon strider.";
RL   Unpublished.
XX
RN   [2]
RP   1482-4222
RA   Kronmiller A.B., Svirskas R., Carlson J., Patel P.S., Wan K.,
RA   Pacleb J., Champe M., Kaminker J., Rubin G. et al.;
RT   "Direct submission to GenBank.";
RL   Direct Submission to Genbank (06-DEC-2001)Berkeley Drosophila
RL   Genome Project, Lawrence Berkeley National Laboratory, 1
RL   Cyclotron Rd, Berkeley, CA 94720, USA.
XX
RN   [3]
RP   1-4222
RA   Kapitonov V.V. and Jurka J.;
RT   "DOC6_DM, a family of Jockey-like non-LTR retrotransposons from
RT   D. melanogaster.";
RL   Repbase Reports 2(11), 3-3 (2002).
XX
DR   [3] (Consensus)
XX
CC   DOC6_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   DOC6_DM is a separate family. Members of this family are over 99%
CC   identical to the DOC6_DM consensus sequence. Therefore,
CC   this family was active very recently.
CC   A portion of DOC6_DM (positions 1482-4089) was described
CC   previously
CC   as the Strider non-LTR retrotransposon [1-2]. DOC6_DM is less
CC   than 70%
CC   identical to reported retrotransposons.
CC   There are 10 copies of DOC6_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
CC   DOC6_DM encodes the 389-aa DOC6_DM-ORF1p (positions 178-1327) and
CC   the 884-aa DOC6_DM-ORF2p (positions 1328-3979) proteins
CC   most similar to the ORF1 and ORF2 protein, respectively, encoded
CC   by
CC   DOC-like non-LTR retrotransposons from the JOCKEY clade.
CC   Copies of DOC6_DM are flanked by ~15-bp target site duplications.
CC   The 3' poly(A) tails of DOC6_DN elements are formed of the
CC   (TTAAA),
CC   (TTAA) or (TAAA) microsatellites that follow the 3' AATAAA
CC   polyadenylation signal. The tail is not included in the consensus
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..1344
FT                 /product="DOC6_DM-ORF1p"
FT                 /translation="MRTKRNKPLVERQNERGSKQFTNYFRPLQTLDDDNDD
FT                 KPIETDTLDEIIIKPPPITLIKQNTKFVHELMAKIKTDDYFIKTISIGIKI
FT                 FLPNMDCFNAACNQLKEHNCEFYTYDTRSNKPYKAILSGLDKLPIETVKSM
FT                 LQNLGLQCTEVKIVEKKTKSDHELLLYIVYFVNKSITVKELRKNFMYVNHT
FT                 KVRWEYKVKLQNKITQCYNCQLFGHGSNNCSVKTSCAHCAGSHQTAVCMDV
FT                 NNKKCANCKGDHPSTELTCPCRISYLNLLSKRSSQRIGRNNLEAHGMRNSK
FT                 QHIAPSALFGNQPQISLPTQTKRVQQLNFGSYSNALTNIHTLPNPKANITN
FT                 ETNLFSCEEINSLLSELITRFNECSNKGEQFQVISQLAIKYVYTNK"
FT   CDS           1328..3979
FT                 /product="DOC6_DM-ORF2p"
FT                 /translation="MFTQTNNFIDNLNIMAWNARAVRNKRIELIKFLENNH
FT                 IHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIP
FT                 CIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLK
FT                 SLYRSDLLKISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKF
FT                 SILYPTQPTYIPHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVVI
FT                 KYSTNFMRNVKTYPILGRANWALFKRIINERLMVEEVVVNCSQISTLDIDN
FT                 LIGSFTRVINYAFLKAVPHKPIHHSKLTLPVHITELFKTRNIIQRQWFRSR
FT                 HPLLKSRCDHLNYIIRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKR
FT                 KQIVPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNTIDQVKISL
FT                 QSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSA
FT                 INHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGL
FT                 SKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQ
FT                 SKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFS
FT                 VNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAA
FT                 VYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPRY
FT                 LPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLY
FT                 PLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKL
FT                 LKLIMNLPYYTNTKYLHIKAGVQKVQQKIQY"
XX
SQ   Sequence 4222 BP; 1557 A; 791 C; 639 G; 1235 T; 0 other;
     cagtcttcga ctagctcttg tcgaacgcgg atgtaaaatc ttctattctc tctgagaaca        60
     ttttggtgta cattaaatat tttctgtttt cttctttaat tgtgatattc gcaaaaaact       120
     acaatcaaac gttcaagtga tgcaattggc gatgctgaag catctgccgt tgaaaaaatg       180
     cgtactaaaa ggaataaacc actagtggag cgccagaacg aacggggctc caagcaattt       240
     acaaattatt ttcgtccact acaaacttta gacgatgata atgatgataa acctattgaa       300
     acggacacac ttgatgaaat aataatcaaa ccacctccta taacattaat taaacaaaat       360
     acaaaatttg tacacgagct aatggctaaa attaaaactg atgattactt tattaaaacc       420
     atctcaattg gaattaaaat atttttacca aatatggact gtttcaatgc agcttgtaac       480
     caactcaagg aacataactg tgagttctac acgtacgata ctagatcaaa caagccatac       540
     aaagccattt tatccgggct ggataaacta ccaattgaaa ctgtcaaatc catgctacaa       600
     aacctaggat tacaatgcac cgaagtcaaa attgtggaaa agaaaactaa gtctgatcat       660
     gaattattac tgtacattgt ttatttcgta aacaaaagta tcacagtaaa ggaactgcgc       720
     aaaaacttta tgtatgtcaa ccacactaaa gtacgctggg agtataaagt gaaattgcag       780
     aataaaatta ctcaatgcta caattgccaa ctatttggac atggatcaaa taattgttca       840
     gttaaaacat catgtgccca ttgtgctgga tcacaccaga ctgccgtatg tatggacgta       900
     aacaacaaaa aatgcgctaa ctgtaaaggc gaccatccat cgacagaact gacatgccca       960
     tgccgaattt cttatctcaa tttactttcc aaacgctcat cacaacgcat tggaagaaat      1020
     aacttggaag ctcatggaat gaggaattct aagcaacaca tcgctccatc tgctctcttt      1080
     ggaaatcaac cccagatctc attgcctact caaactaaga gagtgcaaca actcaacttt      1140
     ggtagctata gtaatgcact caccaatatt catactttgc ctaatcccaa agcaaatatc      1200
     acaaatgaaa ctaatctctt ttcatgtgaa gagataaatt ctcttttgtc tgaattaata      1260
     acaagattta atgaatgctc caataaggga gagcaatttc aagtaatttc tcagttagcg      1320
     attaagtatg tttacacaaa caaataattt tattgataat ttgaatatta tggcatggaa      1380
     tgctcgtgcc gttagaaaca aacgtataga actgatcaag ttcttagaaa ataatcacat      1440
     tcacatagca cttataaatg aaacgtggct gactcatagt gaccgtttta atatacccga      1500
     atacactata tacagaaatg acaggaagga aagtagggga ggcggcgttg ccattgcagt      1560
     tagtaacaca ttgatacatg aacaaatacc ctgcattaaa agtcatgtta ttgaaaatgt      1620
     aggtatacaa atcaacactg actctaattc cagtctaaaa atttactcta tttactttgc      1680
     tggaaatact tcaaaatgta ttcctagttc atgtgattta tcttgggacc ataatcattt      1740
     aaaaagtttg tatagatctg atctccttaa gatctcacaa ataaatggaa attttctaat      1800
     ttgcggggac ttcaactcgc gccacagagc atggaagtgt acccgagcca atggttgggg      1860
     caaaattctc aatgaacttt cagatctggg aaaattcagt attttgtacc ctacgcaacc      1920
     cacatatatt ccgcataacc ataaagcaaa agcatcaaca ttggacctat gcctcactaa      1980
     tatccctaac cagctggcta atccagcagt aatgcaagag ctttcctctg atcacctacc      2040
     agtggttatt aaatactcta caaattttat gcgcaatgta aaaacatatc cgattttggg      2100
     aagggcaaat tgggcgcttt ttaagagaat tataaatgaa aggctgatgg ttgaagaggt      2160
     ggttgtcaac tgctcacaga tatcgacttt ggatattgat aatttaatcg gctctttcac      2220
     tagagtaatc aattatgcct ttcttaaagc agtccctcat aaacctatac atcactccaa      2280
     gcttacactc cctgtacata taactgaatt atttaaaaca agaaatatta tccaaagaca      2340
     atggtttagg tcacgtcatc cattattaaa atcaagatgt gatcatttaa attacatcat      2400
     acgaaaagag cttttcattt ataataatgc aaaatggaac aataaacttc aaaagctgga      2460
     taaatgcagc aaaccctttt ggaatataac caaagcaatt aaaaaaagaa aacaaattgt      2520
     tccgtgtcta agtaaagctg atgaaatata cgcttctgga aaagaaaaag cgaatattct      2580
     tgctgatgtc tttcaactga agcataatct gacacattca tattcaaacc aaaatacaat      2640
     tgaccaagtc aaaatatctt tacaatctat agctgaaacc ccaaacaaca tcgcagaaat      2700
     ttgtagagtc acttatccag aggttttttc aattgtaaaa gctctccata ctagaaaatc      2760
     tcctggaatt gatggaatac ctaatatatc cttgaaaaac cttcctacaa gcgccattaa      2820
     tcatattgtt aacattgcca atcactgtct tcaggcaggc tatttcccac gggattggaa      2880
     gatagcaaaa atagttccaa ttctcaaacc aggaaaacct cctgataacc ctgaaagcta      2940
     ccgaccaata agcctattaa gcggattgtc caagattctg gaaaaattaa ttaaattgag      3000
     attggtgaaa tttttggaca tacacaacac actaccaacg gtacagtatg gttttagaaa      3060
     tggtctaaat accatactgc cgaccttaaa actaagaaat tatattaaag aaagtatcca      3120
     atccaaacaa tctgtagggc tggttacact tgatattgag gctgcatttg atactgtatg      3180
     gcatgacgga ctgttgcaca aactaaagat gattggaact cccatatacc tcattaaaat      3240
     agttcaaaat tttttgacac atcgatactt tagcgttaat ttgaacagta gtcaatctgc      3300
     tagacgaatt ttaaatgcag gtgtgccaca gggttctgtc ttaggaccta cattgtttaa      3360
     tatttttaca cacgatattc cacaagctac aaactgtgta ctttcactgt ttgctgacga      3420
     cgccgctgtc tacagtgctg gtttctcgta cagcgagata aatcaatcca tgcagagtta      3480
     cttaaatgaa ttagacatat attacaaaaa atggaaaatt aaaattaacc ctaataaaac      3540
     gaatgctata ttttttacaa aaagaaggaa acctcgttat cttcctgata gacagttgcg      3600
     aatactagac tctccaatac aatgggttga caacattcga tatttgggta taatttttga      3660
     taaaaaacta acatttaaat accacatcaa caacacaatt atgaaagtta ataaaattat      3720
     ttgcacactg taccctctaa taaatcgtaa atctaaatta tcaatatcca ataagatcat      3780
     aatttttaaa acaattttta atccaatatt aatgtatggg tcacctgttt ggggtagatg      3840
     tgctcaaact catatcaaaa aacttcaaat atgccaaaac aagctgttaa aattaataat      3900
     gaacttacct tattacacaa acactaagta cctacatata aaagcaggtg tacaaaaagt      3960
     tcaacaaaaa atacaatatt aacaatcttt tgtttcaagt cttagttttt aagttagttg      4020
     taagtcaatt aaggtttttc ttctcccttg ttttccttaa taaataataa atattgttat      4080
     acaaaaaact aaaaacaggt caactagaca taattaataa atatttcaga tgaaagcctt      4140
     agctaaacac tgtaaatacc taattatacc attagcttta atgaaatgta catatatata      4200
     taagggataa agcacaaata aa                                               4222
//
ID   Dong        repbase;    DNA;    INV; 4134 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   05-NOV-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Bombyx mori non-LTR retrotransposable element.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element;
KW   Repetitive element; Non-long terminal repeat; BMRP2; Dong.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4134
RA   Xiong Y. and Eickbush T.H.;
RT   "Dong, a new non-long terminal repeat (non-LTR) retrotransposable
RT   element from Bombyx mori.";
RL   Nucleic Acids Res 21, 1319-1319 (1993).
XX
RN   [2]
RP   1-4134
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (05-NOV-2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           419..4006
FT                 /product="Dong_1p"
FT                 /note="includes a reverse transcriptase and a
FT                 restriction-like endonuclease."
FT                 /translation="MLRRGRIFLPASTKAGKTRGRMKWSREVNLFIMRTYY
FT                 YVTKLETDLTIYRKKLHEHFSLKYPNVIISQQRISDQKRAIERNKLLSQET
FT                 LDRLKEEVRKQLEDEQTNNVENEKLNSETYSHEYTTLTPQTILTKKTQQHT
FT                 NIISSTQTSHSSTQTESITLLLENEVDILNTNPTEGATQTQEVKDKFETNL
FT                 TMYSGMDPKARPPLPKLKYSSKLNELIRLFNNDILVDYISPDTQLSDVHTL
FT                 TYCTAVTISEQLKYKIIAIEGNARHKKNFKPPWQQRLEKDIAKLRADIGKL
FT                 TQYINNNRSKKVVQSVEQIFKNTKIHTSHENGNKKSQEFLDTLKQKLALKA
FT                 HRLKRYNNSQKRKNENTIFLTNEKLFYRNLIKPKTDRDNSNIDIPTAEQLE
FT                 MYWARLWENSAKHNDKANWITEEKERWDTIEEMQFDDVTEEEITTITARLH
FT                 NWKSPGIDKIHNFWFKKLICLHKTIAKNLTDIISGNQSIPEFIATGITYMI
FT                 PKGDFSIEASQYRPITCLPTIYKILTTVITKKINSHIEHNNILAEEQKGCR
FT                 RGHMGCKEQLIIDSTIMKHATTKNRNLHCTYIDYKKAFDSIPHSWLIQVLE
FT                 IYKINPIIISFLRNIMTHWQTTLKLKNPPNFVTTRQIAIKKGIYQGDSLSP
FT                 LWFCLALNPLSHQLHNDRAGYRIKQQDNTETIISHLIYMDDIKLYAKNDKE
FT                 MKKLIDTTTIFSNDISMQFGLDKCKTVHIIKGKVQPGDYTIDDTNTITAME
FT                 PSDLYKYLGFQQLKGLDHITIKQSLTSEYKKRINAICKTKLSGKHLIKALN
FT                 TYAIPILTYSFGIIKWSKTDIEQIERITRTTLTKHNNLHPKSAIERLTIKR
FT                 QDGGRGMIDIWHLWRKQIHSLKTFFYIKSDLSEIHRAIAQNDNNYTPLNLK
FT                 QKELIDNTENLRNRNPQKDMEENWKKKALHGRHPHDLSQSHIDSKASNMWL
FT                 KTGSLFPETEGFLIAIQDQVINTKNYRKYIIKDPTIRDDKCRKCNTQPETI
FT                 QHITGACSTLTQTDYTHRHNQLANIIHQQLALKHKLIQNTNTPYYNYKPQT
FT                 VLENDSCKLYYDRAILTDRTIHYNRPDITLQDKNNKVTYIIDIAVPNTHNI
FT                 QKTFTEKMTKYTELKEEIVRIWKQKKAYIVPIIISTTGVVPNHIHNSLKLL
FT                 DLKDNIFISLQKAAILNTCRIVRKFMQLEENQTYYTQ"
XX
SQ   Sequence 4134 BP; 1718 A; 863 C; 649 G; 904 T; 0 other;
     gctagctccc taaaatccta ccttacgtcc gaggcgaaca tctgtccacg tggggagcgg        60
     aaacgcgtac tatcgaaact tacgcggcta acaaggtaaa ggtaacccat taatatggag       120
     acaagactaa aaagaaaatt gagagggccg cttcccgggg gcgatcgccg gggcacacct       180
     ggagctggcg ctgggtgttc cagcatagga tccgtcagcg gcggagagtt gagcaggcgg       240
     gctctcgccg gggatttaca acccgaaaat gctacagccg ccaacagaaa tcacgatgta       300
     gaaagtagga gcaatagccc atgtgaacct tacagcccga gtaccggttc atacaacccc       360
     tcggtacaat catcaccatc atcctcgggt catagaggct caccaacgtc gactatggat       420
     gttgcgcagg gggcgaatct ttttacctgc gtccaccaaa gctggcaaaa caaggggccg       480
     catgaaatgg agcagagaag taaacctatt tatcatgcgc acctactact acgtcactaa       540
     attagaaact gatctgacta tttacagaaa aaagctgcat gaacattttt cactaaaata       600
     ccctaatgta ataatttcac agcaaagaat atctgaccaa aaaagggcaa tagaaagaaa       660
     taaactacta tctcaagaaa ccctagaccg actaaaagag gaagtgagaa aacagctcga       720
     agacgaacaa accaataatg ttgaaaatga aaaattaaat tcagaaacat attcacacga       780
     atatacgaca cttactccac aaactatttt aacgaagaaa acacagcaac atacaaatat       840
     tatctctagc acacagacct ctcattcatc cactcaaacc gaatcaataa ctctgctgtt       900
     agaaaatgaa gtcgatattt taaatactaa ccccacagaa ggggcaacac agacacaaga       960
     agttaaagat aaatttgaaa cgaatttaac aatgtactca ggcatggacc ctaaagcaag      1020
     gccgccattg cctaaactta aatatagctc taagctaaat gaactgatac gtctatttaa      1080
     taatgacata cttgtagatt acatctcacc agacacacaa ctatcagatg tacatacatt      1140
     aacatattgc accgccgtaa ctatttcgga acaactaaaa tataaaatta tagcaataga      1200
     aggaaacgcg agacataaaa aaaacttcaa accaccgtgg caacaaagat tggagaagga      1260
     tatagcaaaa ttgagagcag atattggtaa actgacccaa tacataaata ataatagatc      1320
     taaaaaagta gtccaaagcg ttgaacaaat atttaaaaac actaaaatac acacatcaca      1380
     cgaaaatggc aataaaaaat ctcaagaatt tttagacaca ctgaaacaaa aattagctct      1440
     aaaagcccac agactaaaaa gatataacaa ctcacagaaa cgaaagaatg agaacactat      1500
     atttctaaca aatgaaaaac tattctacag aaacctaata aagccgaaaa ctgatcgaga      1560
     caatagtaat atagatatac caacagcaga acaattggaa atgtattggg ctaggttatg      1620
     ggaaaatagt gcaaaacata atgacaaagc aaattggatt actgaagaaa aagaaagatg      1680
     ggatacaata gaagaaatgc aatttgatga cgtgacagag gaagaaataa ctactataac      1740
     agctagacta cataactgga aatccccagg tatagataaa atccataatt tttggtttaa      1800
     aaaactaatt tgcttacaca aaacaatagc caaaaatcta acagatatta tctctggaaa      1860
     tcaaagtatt cccgaattca tagcgacagg aatcacttat atgataccaa aaggtgactt      1920
     ctctatagaa gcatcccaat atcgaccaat tacatgcctt ccgactattt acaaaatttt      1980
     aacaacagtt attacaaaga aaataaattc acatatagaa cacaataata tcttagctga      2040
     agaacagaaa gggtgtagac gaggccacat gggctgcaag gaacagctaa ttatagactc      2100
     aaccatcatg aaacacgcca ccacaaaaaa tagaaattta cactgtacat atattgacta      2160
     caaaaaagct tttgatagca tcccacattc atggctgatc caagtcctag aaatctacaa      2220
     aattaaccct ataataataa gcttcctacg caatatcatg acacattggc aaaccacact      2280
     taaattaaaa aaccctccta attttgtaac aacacgacaa atagccataa aaaagggtat      2340
     ttaccaaggt gattctctca gccctttgtg gttttgcctc gccttgaacc cactatccca      2400
     tcaattgcat aatgaccggg cgggataccg cattaaacaa caagataaca ccgaaacaat      2460
     aatatcacac ctgatttata tggacgacat taaattatac gcaaaaaatg acaaagaaat      2520
     gaaaaagtta atagatacta ccacgatatt cagcaacgac atcagtatgc aatttggact      2580
     tgataaatgt aaaaccgtac atataataaa aggaaaagtc caacccggtg attatacaat      2640
     agatgacaca aacacaataa cggcgatgga accaagtgac ctttataaat atctgggctt      2700
     tcagcagctc aaaggactcg atcatataac aataaagcaa tcattaactt cagagtacaa      2760
     aaaacgtatc aatgccattt gcaaaacgaa attatctgga aaacatctta taaaagcact      2820
     gaacacctat gcaataccca ttctaaccta ctcatttgga ataataaaat ggagcaaaac      2880
     tgacatagaa caaatagaac gcataacaag gactacatta acaaaacaca ataatcttca      2940
     tccaaaatct gcaatagaaa gattgacaat taaaagacaa gacgggggta gaggcatgat      3000
     agatatttgg catctatggc gtaaacaaat acacagctta aaaacatttt tctacataaa      3060
     atcagattta agtgaaattc acagagccat agcacaaaat gataacaact acacaccgct      3120
     aaatctcaaa caaaaagaac taatagataa tacagaaaac ctaagaaata gaaacccaca      3180
     aaaagacatg gaagaaaact ggaagaaaaa agcgctacat ggacgacacc ctcatgacct      3240
     aagccaatct cacatagaca gcaaggcatc aaacatgtgg ctcaaaacag gaagtctgtt      3300
     ccccgaaacg gaaggatttt taattgccat acaggaccaa gtaataaaca caaaaaatta      3360
     cagaaaatat attattaaag atcccactat tagagacgat aaatgccgca aatgcaacac      3420
     ccagccagaa accatacagc acataactgg agcatgttca acccttacac agacagatta      3480
     cactcacaga cacaaccaac ttgctaatat tatccatcaa caactggctc tcaaacataa      3540
     attgatacaa aatacaaaca caccgtacta caattataaa ccacaaaccg ttcttgaaaa      3600
     tgactcctgt aaactttatt atgatcgcgc tattcttacc gataggacga ttcactacaa      3660
     tagaccggat atcactttac aagataaaaa caataaagtc acctacatta ttgacattgc      3720
     agtcccgaat acccacaaca ttcaaaaaac gtttacagaa aagatgacaa aatacacaga      3780
     acttaaagaa gaaatagtta gaatttggaa acagaaaaaa gcatacatag tcccaataat      3840
     aatctcaacc actggagttg tcccaaacca catccacaac agcttaaagc ttctagattt      3900
     aaaagataac atatttattt cactacaaaa ggcagctatc ctaaatacat gcagaatagt      3960
     gagaaagttc atgcagcttg aagaaaacca aacttactac acgcaataaa aactagcata      4020
     attattaact cataactaat gtatattact tggccaaaag cccgtatata cagttccacc      4080
     ggctctgtcg acagactgaa ctgagaaagg ggaaacatat ggaaataata ataa            4134
//
ID   Dong-1_HMM  repbase;    DNA;    INV; 4518 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4518
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2792-2792 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. It is inserted into (TAA)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           633..4274
FT                 /product="Dong-1_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MNHNKHQHQSHQSYITLVQEQHPHHQRLPQINQHRIS
FT                 IRKESQNSINVDKSQGDRRRKWTQPEEEELMFCYYMAKXEGTEYIRKLEKL
FT                 FKERNPDNPKIHKFNGNTLSNQARRILKQNLISQEQLNRIKQSAEIEMQLI
FT                 QHNNIHTPIDTQTYTSTTLNNIIEETIEEPTTLNNESRETFNPDNQPVPQT
FT                 ADYYENPIISQFLNILAETKEIAIEEREYLPKAKINKQYLQNLAIINNFLP
FT                 DLLPGACSLRDTNDIIYSAAKTLIINNNQSPYTPSNTTKPHTDPPWKKRVK
FT                 VKIERLRKELGQMIEISRGVNSRKMIKIKIKLYSKYNIQNEIEHKNREEML
FT                 KQRIKALAGRIKRYEEINSRKQQNKMFTEDEHRLYRSLNNKQENINIKLPS
FT                 KDSTEEFWKNILSQPVSHNHNAKWISDIRQHNDTTINTHLFEEITTEQIKQ
FT                 AVGKMLNWKAPGQDKIQNYYLKYFSKMHDHLAMLFTNILKGEEPLEDWLTT
FT                 GKVILIPKNLDTEEPKNWRPIACLPSMYKLLTSILADQLYNHCAANNIMAP
FT                 EQRGCRRGARGCKDHLMINKAILEDAHKSQKNLSMGWIDYQKAFDSISHEW
FT                 LLQVLDIYKCPPAIKFFLERAMPKWKVVMTAKGSSNSFTTEPIQIKRGIFQ
FT                 GDSLSPMLFCLALNPISVILGKYDKKGYHLKDSVWVNHLIYMDDLKVYANN
FT                 KTNLKILLNSVEIFTADIGMSFGFDKCNILHITAGHRNYTEGDEHVLLNGN
FT                 SFKQLKIDQTYKYLGINESGKINHSNIRDQLTKEYFRRVKSITNSYLNARN
FT                 LIKGINTYAVPVLMYSFGVINYKNSDLKRIDVKTRKLLAIKKVHRQKADLE
FT                 RLYLPVTNGGRGLINTENLYKAHILKYKLYLDQKSDYLIEAIVTHDQKREK
FT                 YSIYKDSLEIETELKLTSGNNHTKSEIKNCIIKKQNEAWRNKSLHGQFPKK
FT                 VLDLANIDRELSFKWLKKQTVSPALESSIFAIQDQAVITRQHERDILKRNV
FT                 DGKCRLCVSRDETVQHLLAGCEKLAGTYFVKRHNNLVQYIFWCLARKSKME
FT                 VNKLWWKEELKQPTVRENSVAKLMWELPVQTDVTIVHNRPDLIYIDKTNNH
FT                 TYLIDISVPSDYNIGAKELEKISKYHPLKVELSRLWNTTVTTIPIIVGATG
FT                 VVSKSLQRYCDKLDTYINIQILQKQAALHSSTIINKVLGDTVFVTQPQQSS
FT                 IADT"
XX
SQ   Sequence 4518 BP; 1758 A; 778 C; 852 G; 1124 T; 6 other;
     gcccctcata gtctaactcc acgtccggct gtaagatcta tgccacgtga ggggtggaac        60
     atcgaagtct gtatatcaga cggtgactta atcgatggcc aamggagcac tagcaacctt       120
     cttaatcatg aagagacaat ttaagaattt acgtataggg tcgctacccg ggggtgatcg       180
     ccggggcatg tctggagctg gcgctgggca tgacagcatg cggaccgcca gtggctctcc       240
     gttgaacagg cgggcgggag tcggggaaac cgaaaatgtc acagccgawt ctgaggggwa       300
     tggggtagga acgaatgaga ctttgccgag aagggaatct cctgtcgaam actcggccgg       360
     tccatccgtg gggaccacga taagttcaac aactgcagga aaacaaaagt ggtcacaagc       420
     tgaattagaa gaattgatgt actgttatta taaggctagg agtgagggtg gaggatacat       480
     tagaaaactt gaaaatattt ataaagaacg taatccaaca aactcaaaaa gttgcatgaa       540
     cggaagtctc ttatctaatc aagcgcgaag aatcataaaa caaaatgttt tatcaaaaaa       600
     tacactcgat acaatacaaa aaacaataga aaatgaatca caacaagcat caacaccagt       660
     cacaccaatc atacataaca ctcgttcaag aacaacatcc acatcatcaa cgtcttcctc       720
     aaatcaacca gcacagaatc agtattcgca aagaaagcca aaattcaata aacgtggata       780
     aatctcaggg tgataggagg agaaagtgga cacaaccaga ggaagaggag ctaatgtttt       840
     gttattatat ggcgaaacaw gaagggacag aatacataag aaaactagaa aagctattta       900
     aggaacggaa ccctgacaat ccaaagatac acaaattcaa tggaaataca ctgtctaacc       960
     aagcgcgtag aattttaaaa cagaacctta tatcacaaga acaactgaat cgaataaagc      1020
     agtctgctga aatagagatg cagctaatac aacacaataa cattcacaca cccattgata      1080
     ctcagacata tacatcaact accttaaata atataataga agaaacaata gaagaaccaa      1140
     caacacttaa taatgaaagt agggaaacat ttaaccctga taatcagcca gttcctcaaa      1200
     cggctgatta ttacgaaaat ccaattatta gtcaatttct taacatttta gctgaaacaa      1260
     aggaaatagc tatcgaagag cgcgagtatc tgccaaaagc caaaattaat aagcaatatc      1320
     tacaaaattt agcaattata aacaactttt tgccagacct tttaccaggt gcttgctccc      1380
     ttcgagatac aaacgatata atttattcgg ctgcaaaaac cttaataata aataataatc      1440
     aatcacctta cacacctagt aatacaacaa aaccgcatac agacccacca tggaaaaaaa      1500
     gagtaaaagt aaaaatagaa cgtttgagga aagagttggg gcagatgata gaaatctcca      1560
     gaggagttaa ttcaagaaaa atgataaaaa tcaaaataaa actgtattct aagtataata      1620
     tacaaaacga aatagagcat aaaaatagag aagaaatgtt gaaacaaaga ataaaagcat      1680
     tagcaggtag gataaagcga tatgaggaaa taaatagtag gaaacaacaa aataaaatgt      1740
     ttacagaaga cgaacataga ctgtatagaa gtttaaacaa caagcaagaa aatattaata      1800
     taaaattacc gagcaaagac agtactgaag aattttggaa aaacatttta tcgcaaccag      1860
     tttctcacaa tcataacgca aagtggatat ctgatattag gcaacacaat gacacaacta      1920
     taaatactca tttatttgaa gaaatcacta ctgaacagat taaacaagcc gtaggtaaaa      1980
     tgttgaattg gaaggcgccg ggacaagata aaattcaaaa ctattaccta aaatattttt      2040
     ctaaaatgca cgaccatcta gcaatgttat ttacaaatat tctgaagggt gaggaacctt      2100
     tagaagactg gttaactact ggtaaggtta ttttaatacc aaaaaatctg gataccgaag      2160
     aacctaaaaa ctggcgcccg attgcatgtt tgccgagtat gtacaagctt ctaacctcga      2220
     tattggctga ccaactttac aaccattgtg ctgcaaataa tatcatggcc ccagagcaga      2280
     gaggttgtcg tcgtggggcc cgtggatgta aagatcactt aatgatwaac aaggccatat      2340
     tagaagatgc tcacaaaagt caaaaaaatt taagtatggg ctggatagac tatcaaaagg      2400
     cgtttgatag tatttcgcac gaatggcttt tgcaagtatt agatatctac aaatgcccac      2460
     cagctatcaa attctttctg gaaagagcta tgccaaaatg gaaagttgtg atgacggcaa      2520
     agggctcttc aaactctttt actactgaac cgattcagat aaagcggggc atttttcagg      2580
     gcgactcatt gtctccaatg ctattttgtt tggctctcaa tccgatatca gtcattctag      2640
     ggaaatatga caaaaaggga taccatctga aggacagcgt gtgggttaat cacctcatat      2700
     atatggacga ccttaaagtg tatgcaaaca acaaaactaa cttgaaaatt ttactgaata      2760
     gtgtagaaat ttttactgcc gatataggta tgtcatttgg atttgataaa tgtaatattc      2820
     ttcatataac tgctggacat aggaattaca ccgaaggtga tgaacatgta ctactgaatg      2880
     gaaatagttt taaacagtta aaaatagatc aaacatacaa atatttagga ataaacgaat      2940
     cggggaaaat aaaccacagt aatattagag atcaattaac aaaagagtac tttaggaggg      3000
     ttaaaagcat tacaaattct tatttaaacg caagaaattt gataaagggg attaatacgt      3060
     atgctgttcc agttttaatg tattcattcg gagtgattaa ttataaaaat agtgatttaa      3120
     aacgaataga tgtcaaaaca cgaaaattat tagcaataaa aaaggtccat cggcaaaaag      3180
     cagatttaga gagactatat ttacccgtaa cgaatggcgg tagaggttta attaatacag      3240
     aaaatttata taaagctcat attttgaagt acaaactata tttagatcag aagagtgatt      3300
     atttaataga agcaatagtg acacacgacc agaagagaga aaaatattca atatacaaag      3360
     attcactgga aatagaaaca gaattaaaat taacgtccgg taataatcac actaaatctg      3420
     aaattaaaaa ttgcataata aaaaaacaaa acgaagcttg gagaaataag agtttacatg      3480
     gacaattccc taaaaaagtt cttgatcttg ccaatattga tagggaactc tcgtttaagt      3540
     ggctgaagaa gcaaactgtt tcacctgcac tggaatcgtc catatttgct atacaagatc      3600
     aggcagtaat aacgcgccaa catgagcgag atatattgaa gcggaatgtt gatggcaaat      3660
     gccgcttgtg cgtaagtagg gacgagacag ttcaacatct tcttgcaggt tgtgagaaac      3720
     ttgccggtac ttattttgta aaacgacata ataacttagt tcagtatata ttctggtgct      3780
     tggctaggaa aagcaaaatg gaggttaata aattgtggtg gaaggaggaa ttaaaacaac      3840
     caactgtaag agaaaatagt gttgcgaagt taatgtggga attaccggta caaacagatg      3900
     ttacaatagt acacaataga cctgacctga tatatataga taaaacaaac aaccatactt      3960
     accttattga catctcagta ccgtctgact ataatattgg agctaaggaa ctagaaaaaa      4020
     ttagcaaata tcatccgctt aaagttgaac tctccagatt atggaacacc acagtcacaa      4080
     ctattccgat aattgtagga gccacgggag tggtatcaaa aagccttcag cgatactgcg      4140
     ataaattaga tacatacata aatattcaaa tccttcagaa acaggcagca ttacactcct      4200
     ccaccataat taataaagtt cttggagata ccgttttcgt aacgcaacca cagcaatcat      4260
     caatagcgga cacgtagtca tcatccacac acacacaaat tcacatactt ctgaaattaa      4320
     actcacaact gacactaatt taacagtatt ttatttaaat atatgtatta atttgattta      4380
     tttatttact aacttaacaa ggggtaggag gagggggtag tattaacaag aatatagtga      4440
     atgccttttt tcctgagggt ctcgggacgg ggcatttatt aaaaccgact aaatcgtgaa      4500
     aaagttgaga aaccaaaa                                                    4518
//
ID   Dong-1_PPo  repbase;    DNA;    INV; 891 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-891
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3109-3109 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..731
FT                 /product="Dong-1_PPo_1p"
FT                 /note="restriction-like endonuclease."
FT                 /translation="PDVDQLSSVAWLRFSNLFGETEGFVFAIMDEVIVTNN
FT                 YRKHILKDGTTDICRACRRPGESIRHIVSGCSRLADGAYLHRHNQVAKIIH
FT                 QQLALKYALVESEVPYYQYQPXPVLENSRITXYWDRSIITDRTIAANRPDI
FT                 VIIDRSESCVMLVDVTIPHDENLVKAENEKLLKYLDLAHEITAMWRMKSTT
FT                 IIPIVVSVHGLIAKSFDQHLKKLSLDSWIKGPIQKAVILETARIVRRFLSL
FT                 QP"
XX
SQ   Sequence 891 BP; 256 A; 177 C; 195 G; 261 T; 2 other;
     gtcctgatgt ggaccaatta tcctccgtgg cttggctacg cttcagtaac ctctttgggg        60
     agactgaagg ttttgtcttt gcaatcatgg acgaagtcat cgtaacgaat aactaccgga       120
     aacatatcct aaaggatggt acgactgaca tttgtcgggc atgtcgtcgg cccggtgagt       180
     ctattagaca tatcgtttcc ggttgttctc gccttgcgga cggtgcatac ttgcatagac       240
     ataaccaagt ggccaagatt atccatcagc aacttgccct taaatatgct cttgtggaat       300
     ctgaggtacc atattaccaa tatcagcctw caccagttct ggaaaatagc cgtatcacgm       360
     tctactggga ccgatctatt attacggaca ggactattgc tgccaataga cctgatatag       420
     taataataga tcggtctgag agttgtgtaa tgttagtcga tgtcactatc ccacatgacg       480
     agaatctcgt gaaagccgaa aatgaaaaac tattaaaata tttggatttg gctcacgaga       540
     ttaccgccat gtggcgtatg aaatcgacta ccattattcc gatagtcgtt tcggtacacg       600
     ggctgatagc gaagagcttc gaccaacacc tcaagaagct ctcgctagac agttggatta       660
     agggcccgat tcaaaaggcg gttattttag aaaccgcacg aatagtgagg aggttcctgt       720
     ctctgcagcc ctgaccactg gttgcttgag tcatcggatt ccgcagccgg tggtgctcta       780
     tttttttata taatatgttt tattttgtta tttttataag aaaatcatgt aaaatgtatt       840
     atatatgaaa ataagagaat aaagatatat tggaataaat attaataata a                891
//
ID   Dong-1_PXu  repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-196
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3076-3076 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 196 BP; 54 A; 26 C; 44 G; 72 T; 0 other;
     aacgcgcgca tcgtgagaag gttcctgtct ctgcagccct gaccactggt tgtttgagtc        60
     atgggattcc gcagccggtg gtgttctgtt tttaatataa tatgtttttt tattgtatat       120
     gaaatgtact atattaaaaa tatgataaat aaatgaatac gtgattataa atgctaatgt       180
     ttggttagat ggatgt                                                       196
//
ID   Dong-1_TCas repbase;    DNA;    INV; 3160 BP.
XX
AC   .
XX
DT   20-AUG-2013 (Rel. 24.09, Created)
DT   20-AUG-2013 (Rel. 24.09, Last updated, Version 1)
XX
DE   Dong-type non-LTR retrotransposon family from Tribolium castaneum
DE   - consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3160
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1800-1800 (2019).
XX
DR   [1] (Consensus)
XX
CC   It is inserted into (TAA)n microsatellites.
CC   Genome Sequencing Center at Baylor College of Medicine:
CC   Tribolium castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           990..3026
FT                 /product="Dong-1_TCas_1p"
FT                 /translation="MKAKSEDLSKPQNYRPITCLNTLYKIITSLLANKIDN
FT                 HVDENQILTEEQKGCRRKTQGCKEQLIIDGIIANEAKKRHRNVSVAWLDYQ
FT                 KAFDSVPHSYLIDVLNIYKVNGKIVNFLQHCMKSWRTQLLVNNDRKTSVKT
FT                 NPIPIESGIFQGDSLSPILFIICLNPLSRLLQSSNLGYKLKGSSTQRLSHL
FT                 LYVDDAKLYAENEQDLGKLLTITKTFSENIRMKFGYDKCAKIIYKKGKKTT
FT                 SQNIEHLNIKELDDTEKYKYLGLDQHLIRDTKELKDKTEKKLHTRINKILN
FT                 TSLNGKNKVKAVNTWAIPTITYTFGVIQWSQTDLERIDRKIRTDMTANRIH
FT                 HTNASVIRLYLPRRSGGRGLLNLEHLWKKQIINLRKYFKEKQTPLLKVICE
FT                 IDSYSPLKLKNNDEPTQAPTIREKREEWQGKALHGKYPKALDSGHQTESTS
FT                 WLTSGSLYGETEGFMCAIQDGVISTKNYKKCILKEDIDDHCRMCKTAPETI
FT                 QHITSGCPTIAHTEYLKRHNLTAGILHQKIVTKLKLQESEDSYYTYVPQPV
FT                 IETDSWKVYWDITIRTDKTVAANRPDIVLHDKQRKEAFFIDIAHPNDNNLE
FT                 KTEREKITKYFELSQEYKAIYKLNKVTVLPIIITSTGIISKNMETYLSKIH
FT                 LDNKPMIRLMQKSVILETCRIVRKFLNIQE"
XX
SQ   Sequence 3160 BP; 1277 A; 619 C; 493 G; 771 T; 0 other;
     tttctttcta aattaaagct tagtttttct aagcaaaaat gatgcttatt ttgtgttatc        60
     tgagcgtttt ctcatttcta tgcaagagat catctgtgat ctgtgttttt aggcaagaaa       120
     ttgtctaaat taatataact cattttaaaa ctggtataaa aacatttact atacaaaagt       180
     tatattcggt ttttaataat aatagtaata ataataataa taataataat aataataata       240
     atagtaataa aagaaatatt aataataata ataataataa taataaaagt agtaataata       300
     ataatgaatt tctttctaaa ttaaagctta gttttctaag caaaaatgaa gcttattttg       360
     tgttatatga gcgttttctc atttctatgc aagagatcat ctgtgatctg tgtttttagg       420
     caagaaattg tctaaaatta ataactcatt ttaaaactgg tataaaaaca tttactatac       480
     aaaagttata atcggttttt aataataata ataataataa tattaataat agtaataata       540
     atagtaataa taataataat aaaaataata ataatagtag taataaaagt aggcttagtt       600
     ttctaagcaa aattgaagct tattttgtgt tatatgagcg ttttctcatt tctatgcaag       660
     agatcatctg tgatctgtgt ttttaggcaa gaaattgtct aaaattaata actcatttta       720
     aaactggtat aaaaacattt actatacaaa aattataatc ggtttttaat aataataata       780
     ttaataataa taataataat aataataata ataatgtaca tgaagttgtc cggaaactac       840
     acaattggaa agcacccggc cctgacaaaa tccagaactt ctggtggaaa aacttaacgg       900
     cagtacactc atatctagta cgacacataa acaacatcat tgaacaccca gaagaaacac       960
     cacaattcat cacactaggg ataacatata tgaaagcaaa aagcgaagat ctttctaaac      1020
     ctcaaaacta cagacccata acttgtttga acaccctata caaaatcata acatcactgc      1080
     tcgcaaacaa gatcgacaac catgtagacg aaaatcaaat tctaacagaa gaacaaaagg      1140
     gctgtagacg gaagacccag gggtgcaaag agcaattgat tatagatggc ataatcgcca      1200
     atgaagcaaa gaaaagacat agaaatgtaa gtgtagcctg gcttgactac caaaaagcct      1260
     tcgactctgt gcctcattca tacttaatcg acgtacttaa catctacaaa gtcaatggca      1320
     aaattgttaa ctttctccaa cattgcatga agtcatggcg aacacaactc ttagtcaata      1380
     atgaccgaaa aacatccgtg aaaaccaacc caattccgat tgaaagtggc atcttccaag      1440
     gagactcctt gagccctatc ttgttcataa tctgcctaaa tccactctca agactgcttc      1500
     aatcctctaa ccttggctac aaactaaaag gctcatcaac acaacgactc agccacctct      1560
     tgtacgtcga cgatgccaag ttatatgcag aaaacgaaca agatctcgga aaactgctca      1620
     ccatcacaaa aacattcagt gagaacatcc gtatgaaatt tggatatgac aagtgtgcca      1680
     agatcatcta caagaaaggg aagaaaacga ccagccagaa cattgaacat ctcaacatca      1740
     aggaattgga cgacactgaa aagtacaaat acttaggact ggaccaacat ctaatacgag      1800
     acacaaaaga actgaaagat aaaacagaga agaaactaca tacaagaata aacaagatcc      1860
     taaacacaag tctgaatgga aaaaacaaag tgaaagccgt aaacacctgg gcaataccaa      1920
     caataaccta cacatttggg gtaatacagt ggtcgcaaac agatctagag agaatcgata      1980
     gaaaaatcag aaccgatatg acagcaaacc gaatccatca cacaaatgcg tcagtcatca      2040
     gactctacct accacgacga tccggaggaa gaggactctt gaacttggaa cacctctgga      2100
     agaaacaaat catcaacctg cggaaatatt tcaaagaaaa acaaactcca ctactcaaag      2160
     tcatctgcga aatagattcc tactcaccac taaaactgaa gaacaatgat gaaccaaccc      2220
     aagccccaac aataagagaa aagagagaag aatggcaagg aaaagcacta catggcaaat      2280
     acccaaaggc attggactca ggccatcaaa cagaatcgac aagctggctc acctctggaa      2340
     gtctatatgg agaaacagaa ggctttatgt gtgctatcca ggatggtgtc attagtacaa      2400
     aaaactacaa aaaatgtatc ctgaaagaag acattgacga ccattgcaga atgtgcaaaa      2460
     ctgcaccaga aactattcag cacataacat caggctgccc cacgatagca cacacagagt      2520
     acctgaaacg ccataacctc actgctggaa tccttcatca gaaaatcgta actaaactga      2580
     aactgcaaga atctgaagac tcatattaca catatgtacc acaaccagtc attgaaacag      2640
     acagctggaa agtgtactgg gacatcacga ttcgaacgga caagacagta gcggccaaca      2700
     gacctgacat cgtactccat gacaaacaga ggaaagaagc cttcttcata gacattgccc      2760
     acccaaatga taataacctg gaaaaaacgg aaagagagaa aataacaaag tattttgaac      2820
     tcagtcaaga atataaagca atatacaaac taaacaaagt gacagtcctc cccatcatca      2880
     taacatcaac aggaataata agcaaaaaca tggaaaccta cctcagtaag atacaccttg      2940
     acaacaaacc catgatccgg ctaatgcaga agtctgtcat ccttgaaacc tgtagaatag      3000
     tccggaagtt cctgaacatt caagaataaa tcatacatgc atacctgaat atgattttgc      3060
     acgtgaaaca aatcccttct ggagtgattg gttttatacc ccacgacatg aagataacca      3120
     cttgagcaac ccgactacgc tcagtgagaa gccccaaaca                            3160
//
ID   Dong-2_BM   repbase;    DNA;    INV; 4019 BP.
XX
AC   .
XX
DT   31-AUG-2012 (Rel. 20.10, Created)
DT   31-AUG-2012 (Rel. 20.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-4019
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3457-3457 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. It is inserted into (TAA)n
CC   microsatellites; thus it is a Dong family.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(113..1591,1459..3159)
FT                 /product="Dong-2_BM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MENNLNNERIGPLPGGDRRGTSVAGGGRGRMLASDSR
FT                 RTGWSGVGDRGVWGRSPDATAEEFNDVALRGRDMSPTCSAGTSSSTTGSIN
FT                 DDARRKWSRTELDELMFCFYLAKARGPGYIKRLEKIFKDRNSHITKFRKFT
FT                 GNTLSNQARSILSHNYISKEVLEEIXSKAEQAYLLPDVYSRTALPETITQT
FT                 TANTLPEPIYTADLLHQENFTQQTQHIHPPPNTDTQEQTLTFTQIEPTTQL
FT                 TDTIADEGNEIGEVVVDENQDPLVLDFLQILAETKEIPIDNRTFLPKPKFN
FT                 KHFIKNLQTINNYIPTLLETNQSLREINDVIYAAAKTLIINNKQTPYTPPT
FT                 MQKPKHEPPWKRRLKQKIEDHRKELGRLVEVKAGSNSNKMRNIKNKLYEKF
FT                 KIHNDQDLNNTIEILKQKVKALAGRLRRYDEINQRKIQNKQFAENQHKFFR
FT                 SLNSSQHNPTQIPSQSEIENFWTNILSNPISYNKEAHWITQIQIHQMKLAT
FT                 QSHTNPFSVGNRKLLDEHLIKPNIVQQRSSLDNTNTNSSNEIEEHTFEEID
FT                 VGKLRTAIRKSQNWKSPGIDKIHNYYLKYLTSTHKYIAKLFDRIIKGTEVI
FT                 DSWFTRGRVVLIPKDENTQDPKNWRPIACLPTMYRTVTSIIANELYKHCDK
FT                 NNIIALEQRGCRRGARGCKDHLMINKAILEDAHKCQKNLSTAWIDYRKAFD
FT                 SISHEWLLKVLELYKCPPVVRNFLRLVMPMWSVVMKARGADGSVTTEPIYI
FT                 RRGIFQGDSLSPLLFCLGINPISQILNQYQLKGYTLKDNNIINHLLYMDDL
FT                 KIYSNSKTNLKVLIDSAEIFTGDIGMQFGLKKCNILHLVAGRRKEHRGRGH
FT                 VLLSGDEFRHLRLDEKYKYLGIDEAGKIDHNEVRQQIQKEYFRRVKSVTGS
FT                 QLNARNILRALNIYAVPVLLYTFGIINYKTADLKKIDVKTRKILAMNKAHQ
FT                 QKADVDRLYIPIDQGGRGLTNLETLYKTQIIKYKSYIETEKDHILRAIVEH
FT                 DKNKSKYSIFKETRSNLNEIGLQQNEKYTDKELKNAVVKTKIEIIKAKPLH
FT                 GQF"
XX
SQ   Sequence 4019 BP; 1535 A; 828 C; 777 G; 877 T; 2 other;
     gcccccctaa gtcctacctt acgtccgagt cgaccatcag accacgtggg gggcgggcaa        60
     cgtatactat ataaacttat acggctaaca aggcaaaggc aaacccagta aaatggagaa       120
     taatttgaat aatgaacgta tagggccgct gcccgggggc gatcgccggg gcacgtctgt       180
     agctggtggc ggacgtggca gaatgctagc cagcgactca cgacgtaccg gctggtcggg       240
     agtcggggac aggggggttt ggggtaggtc tccagatgct acagccgaag aatttaacga       300
     tgttgctttg cggggtaggg atatgtctcc cacatgctct gccggcacat cgtcatcgac       360
     cacaggttct atwaacgatg acgcaagaag gaagtggtca cgaaccgaat tagatgaact       420
     tatgttttgt ttttatctag ccaaagcaag agggcctggc tatataaaac gattagaaaa       480
     gatctttaaa gaccgaaatt cacacatcac aaagtttaga aaattcacag gaaatacact       540
     atccaatcag gcacgaagca tattatcaca taattacatt tcaaaagaag tccttgaaga       600
     aattmaaagt aaagcagaac aagcgtatct attacctgac gtgtacagtc gtactgcctt       660
     gccagaaacc atcacacaga caacagcaaa cactctacct gaacctattt acaccgccga       720
     tttactacat caagaaaact tcacacaaca gacacagcac attcacccac caccaaatac       780
     tgacactcaa gaacaaaccc ttacattcac tcaaatagaa cctactacac agcttacgga       840
     tacgatagcg gacgaaggaa atgaaatagg tgaggttgta gtcgatgaaa accaagatcc       900
     acttgtgtta gattttttgc aaatactagc agaaactaaa gaaataccca ttgacaacag       960
     aactttctta ccgaaaccca aatttaataa acattttata aaaaaccttc aaacaattaa      1020
     caactacata cccaccttgc tcgagacaaa tcaatcatta cgcgaaataa atgacgtaat      1080
     ctacgcagct gctaagacat tgataattaa taataaacaa acaccttata ccccacccac      1140
     catgcaaaaa ccgaaacacg aaccaccgtg gaaacgtaga ctgaaacaaa aaatagaaga      1200
     tcatagaaag gaattgggaa ggttggtaga agtaaaagca ggttctaata gtaacaaaat      1260
     gagaaatatc aaaaataaac tatacgagaa attcaaaatt cacaatgatc aggatctaaa      1320
     taacaccatt gagatactaa aacaaaaagt taaggcttta gcaggtagac ttcgcagata      1380
     tgacgaaata aaccaaagga aaattcagaa taaacaattt gctgagaacc aacacaaatt      1440
     ttttaggtct ctgaatagct cgcaacacaa tcccacacaa atcccttctc agtcggaaat      1500
     agaaaacttc tggacgaaca tcttatcaaa cccaatatcg tacaacaaag aagctcactg      1560
     gataacacaa atacaaattc atcaaatgaa atagaggaac acacatttga agagatagat      1620
     gtaggaaaat tgagaaccgc gatccgaaaa tcccagaact ggaaatcacc aggaatagac      1680
     aaaatacata actattatct caaatacctc actagtacac acaaatatat agccaaacta      1740
     tttgatagga taattaaagg taccgaagtc atagatagtt ggttcacaag gggccgagtt      1800
     gttttaatac ctaaagacga aaatactcaa gacccgaaga actggcgtcc tattgcttgt      1860
     ttgccaacta tgtacaggac tgtaacctcc ataatagcca atgaactcta caaacattgc      1920
     gataaaaata acatcatagc cctggaacag cgaggttgca gacgcggggc acgtggctgc      1980
     aaagatcacc tcatgatcaa caaagccata ctggaagatg cacataaatg ccagaagaat      2040
     ttaagtacgg cttggattga ctaccggaag gcttttgata gcatatcaca tgaatggcta      2100
     ctcaaagtac ttgagctcta taaatgtcca cccgttgtca gaaattttct gaggttggtc      2160
     atgcccatgt ggagtgtggt catgaaggct cgcggtgcgg acggatctgt aaccactgaa      2220
     cctatataca tccgacgagg aatatttcaa ggtgattcac tctcccctct tttgttctgt      2280
     ctgggtatca accccatctc ccaaattctc aaccaatacc aattaaaagg atatacactt      2340
     aaagacaata atataataaa tcatctctta tacatggatg acctgaaaat ttattcgaac      2400
     agtaaaacaa accttaaagt tttaatagat agtgcagaaa tctttacagg agatataggc      2460
     atgcaattcg ggctaaaaaa atgtaatatt ctacatctag tcgcgggtag gagaaaagaa      2520
     catcgcggtc gagggcacgt tctgctgagc ggagacgagt tcaggcacct gagattagat      2580
     gagaagtaca aatacctagg gatagatgag gcaggcaaaa tcgaccacaa tgaagtcagg      2640
     caacaaatac aaaaagaata tttccgtcgc gtcaaatccg tcacaggatc gcaactcaat      2700
     gcacgaaata tcttgcgagc cttaaatata tacgctgtac cggttctttt gtatacattt      2760
     ggcataataa attacaaaac cgcggacctc aagaagattg atgtaaagac cagaaagatt      2820
     ttagcaatga ataaagcaca ccaacagaaa gcagatgtag ataggttata tataccgatc      2880
     gatcaaggtg gaagagggct aacaaatcta gaaacactat acaaaacaca aataatcaaa      2940
     tacaaatcat acatagaaac tgaaaaagat catatactta gagcaatagt ggaacatgat      3000
     aaaaataaaa gtaaatattc aatatttaaa gaaacacgat caaatctaaa tgaaatagga      3060
     ttacagcaaa atgaaaaata tacagacaaa gaattaaaaa atgcagtagt taagacaaaa      3120
     atagagataa taaaagcgaa accgcttcac ggtcaatttt agaaagcagt actagaaaaa      3180
     ggaaatatcg acagagacca atccttccaa tggttcaaaa ggcaaccggt gtctccagca      3240
     ttggaatcag ccatatttgc aattcaagat caggcagtgg tgaccagaca acatgaaaga      3300
     gacataatga aacgccaagt tgatggtagg tgtcggttat gctgcattaa agatgagacc      3360
     acacagcaca ttgtctcagg atgcgaaaag cttgctggca cttattacac caaaaggcac      3420
     aataacatag tgcaatatgt tttctggtcg ctagctaaaa agcatgcgtt tcaggtctcc      3480
     gacctgtggt ggcgagaaca ccttacgcag ccgcaggtta gggagaatga aggtgcaaaa      3540
     ataatgtggg agataccggt tcaaaccgac gttacaatag ttcacaatag accagacatt      3600
     atttatataa acaaaacgga caacaaaaca tacctcatag atgtaacagt tccctcagac      3660
     tacaatatag gagcaaaaga aatagaaaag ctaagtaaat accatgcact caaaaccgaa      3720
     ataaccagat tatggaaaac acacacagaa atagtaccaa tagtaatagg agcaaccgga      3780
     gtaatagcca aaagcctaca gaaatactta gataaattag atgcaaacat caacccacac      3840
     atcatgcaga aacaagctgc catacacacg gtcaccatca tcacgaaagt cttgggggat      3900
     acggtcttcg taggagggga aactgagcca ccctttccct gagggtctcg gggcgggagc      3960
     tcagtaaacc gagcctagag ctcgagtaga ggaacaaaaa caataataat aataataat       4019
//
ID   Dong-2_HMM  repbase;    DNA;    INV; 2818 BP.
XX
AC   .
XX
DT   14-FEB-2013 (Rel. 19.10, Created)
DT   14-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2818
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2793-2793 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' is uncertain, 3' is flanked by
CC   (TAA)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2693
FT                 /product="Dong-2_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="KGNRSKKLIHHVXLIKSNYKIHSTHEEPNTELFHFLD
FT                 TLKQKLTLTNSRLQRYKICTLRKTQNNQFSSNEKQFYRNLKNSTKNDIENS
FT                 VQTTPTADDFHKYWTSIWENPVEHNFSADWINYEQMQNQIKTDMKFDEITL
FT                 GMLQLTIEKLSNWKAPGSDFIHNFWYKKFTYIHKHLLKHINHFIQNPHDMP
FT                 EYITVGITYMIPKDSNSLNDPSKYRPITCLQSIYKIITSCLAKIIYNYLED
FT                 NKILAEEQKGCKKFSQGCKEQLIVDSVILKQAHQKKKDIFTMYIDYRKAYD
FT                 SIPHSWLLQVLDIYKIHPTIQQFLKNTISQWTTKLKLTNLDNTIDTVPIKI
FT                 TRGIFQGDALSPLWFCLALNPLSNILNSVQAGYKLKFNNDSVNKTKYKIIN
FT                 HLLYMDDIKLYAETKEDLNKLVNLTETFSQDICMEFGIDKCKINSSKAGQN
FT                 YMHDYLLKNGEHIESLMENETYKYLGYIQSKLTHHKEVKANLTKQFKHRLN
FT                 SILKSKLNSKNTIKAINSYAIPILTYSFGIISWNKTELKNLQRIINTTLTK
FT                 NRKHHPRSCVQRMTLQRIDGGRGLIDIVNLHNKQITNLRKYFHFKSNTSTF
FT                 HESIVENDLKLSTLNLKDKNLLENDPHTERRTKIQEWARKSLHGRHLSELS
FT                 QNYVDKTASNEWLRRGELFPETEGFMLAIQDQVIETKNYQKYIIKKSNLNT
FT                 DICRRCNRASETIQHITGACMSIAQTDYKHRHDQVAHIIHQKLAIKYKLSS
FT                 ALPVPYYKYTPECILENEFYRLYFDRAILTDKTVPYNRPDITFIDKINKTA
FT                 QIIDIAIPNSHNLQTTFSEKLTKYEELKDEIIRMWKLKKVTIVPVVISSTG
FT                 VIPKNLHQSIKTLDLPPYTYALLQKAAILNTCRIVRKFLSITNC"
XX
SQ   Sequence 2818 BP; 1152 A; 466 C; 405 G; 794 T; 1 other;
     taaaaggtaa tagaagtaag aaattaattc atcatgtaaa kttaataaaa agtaattaca        60
     aaatccattc tacgcacgaa gaaccaaata cagaactgtt ccattttctc gacaccctta       120
     aacaaaaact tacattaaca aacagtagat tacaaagata caaaatatgt acattgcgta       180
     aaactcaaaa taatcagttt tcatctaatg agaaacagtt ttacaggaat ctaaaaaatt       240
     caacgaaaaa tgatattgaa aattcagtac aaactacacc gacagcagat gattttcata       300
     agtattggac ctcaatctgg gaaaatccgg ttgagcataa tttcagtgca gattggatta       360
     attatgaaca aatgcaaaat cagattaaaa cagatatgaa atttgatgaa ataactcttg       420
     gcatgttgca attaacaata gaaaaattaa gtaattggaa ggcacctgga tccgacttta       480
     tccacaattt ttggtacaag aaatttacat atatacataa acatcttctt aagcacatta       540
     atcacttcat tcaaaatcca catgatatgc ctgaatatat tacagttgga atcacatata       600
     tgatcccgaa agattcaaat agtcttaatg atccctcaaa gtatagaccc atcacttgtt       660
     tgcaatcaat atacaaaata attacatctt gccttgcaaa aataatttat aattatttag       720
     aagataataa gatccttgca gaagaacaaa aaggttgtaa aaagtttagc cagggttgta       780
     aagagcaatt aatagtagat tctgtaatat taaaacaagc ccatcaaaag aaaaaagaca       840
     tttttactat gtatattgac tacaggaaag cttatgattc aattccacat tcttggttat       900
     tacaagtgtt agatatatat aaaatacacc caactataca acagttttta aaaaatacta       960
     taagccaatg gacaacaaaa ttaaaattaa caaatttaga taacacgata gatactgttc      1020
     caattaaaat cacacgcggt atatttcaag gcgacgcatt gagtcctttg tggttctgcc      1080
     ttgctttgaa tcctttgtcc aatattttaa attcggtgca agctggatat aaactaaaat      1140
     tcaataatga ttcggtaaac aaaactaaat ataagataat aaatcactta ctatatatgg      1200
     acgatattaa gttatacgct gaaacgaaag aagacctaaa taaactagta aatttaacgg      1260
     aaacattttc tcaagatatt tgtatggaat ttggaataga caaatgtaaa attaattcaa      1320
     gtaaagcagg acaaaattat atgcacgact atttactgaa gaatggggaa catatagaat      1380
     cattaatgga aaatgaaaca tacaaatatc tggggtatat tcagtcaaaa ttaacacatc      1440
     ataaagaagt caaagcaaat ttaactaaac agttcaaaca tagacttaat tctatactta      1500
     aatcgaaact taattcaaaa aatactataa aagcgattaa tagttatgca atccccattc      1560
     ttacgtattc atttggaatc atatcttgga acaagaccga attaaaaaat ctgcaacgca      1620
     ttattaatac aactttgact aaaaatcgta aacatcaccc taggtcgtgt gtgcagagaa      1680
     tgacattaca gcggattgat ggcggcagag ggctaataga tatagtaaac ttacacaaca      1740
     agcagataac aaacctaaga aaatatttcc attttaaaag taacacatcc acatttcatg      1800
     aatctatagt agaaaatgat ttaaagctca gtacacttaa tcttaaggat aaaaatttac      1860
     tagaaaatga tccacataca gaaagacgca ctaaaattca agaatgggcc cggaaatctc      1920
     ttcatggaag acatctgagc gaactaagtc agaattacgt cgacaaaaca gcgtcgaacg      1980
     aatggcttag acgcggtgaa ctcttccctg agaccgaagg gttcatgttg gcgatccaag      2040
     atcaggtgat agagacaaaa aactaccaaa aatatattat aaaaaagtcc aatttaaata      2100
     ccgatatatg tagacgatgc aatagggctt ctgaaacgat acaacatata accggtgctt      2160
     gtatgtcaat cgctcagact gattacaaac accggcacga tcaggttgca catataatcc      2220
     atcaaaaatt agcaataaaa tataaactga gttccgcatt accagtacca tattacaaat      2280
     acaccccaga atgtatattg gaaaacgaat tttatcggtt atattttgat agagctatat      2340
     tgactgataa aactgtacca tacaatagac cggacatcac attcatagat aaaattaata      2400
     aaactgcaca aattatagac attgcaatac cgaattctca taatttacaa accacttttt      2460
     cagaaaaact tacaaaatat gaagaattaa aagacgaaat cattagaatg tggaaattga      2520
     aaaaagtaac aatagtacca gtagttatct ctagcacagg tgtcattccc aaaaatcttc      2580
     accaatccat taaaacatta gatttgcccc catatactta tgcccttcta caaaaagcag      2640
     cgattttaaa cacgtgcagg attgttagga aatttttaag catcacaaat tgttaatttc      2700
     attattcata tgtatatgta tatatatata tttatatgtt tggctttcac ttgacttagg      2760
     tccgtgactg tcaatatgcc ggtattaact taccgagact acgaagtaga ataaaaaa        2818
//
ID   Dong-2_PPo  repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-168
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3110-3110 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated.
XX
SQ   Sequence 168 BP; 31 A; 45 C; 34 G; 58 T; 0 other;
     gctcagatgc agaaagcggt gcttctggac accgcccgaa ttgtccgccg gtttctctcc        60
     ctttcaccct aaccctcggc cgtctggtca cccctgccga gggaatcccg tctggctggt       120
     attatttatg tattttatta ttatttaagt atgttttatt attactta                    168
//
ID   DongAa      repbase;    DNA;    INV; 4004 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Dong non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Dong; DongAa;
KW   R4_Ele1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4004
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4004
RA   Kojima K.K. and Jurka J.;
RT   "Dong non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Also called R4_Ele1.
CC   [2] Consensus update and chracterization of insertion sites. ~99%
CC   identical to consensus. The consensus is ~100% identical to the
CC   original sequence in [1]. This family is inserted into (TAA)n
CC   microsatellites, like Dong elements in Bombyx mori and Anopheles
CC   gambiae. The target specificity and phylogenetic position show
CC   that this is a Dong element.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..3851
FT                 /product="DongAa_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MKANPAMETRSMRNRRMRSPEEGAPTGAGPGTGDRAS
FT                 GQRLEEDNVQERPSSQRAQPVPRTRNRNGSSRNHQGHAAPTDVAVADRRQS
FT                 LTLAGGRRQRIMWTREMNMYVIRCYYVCTRMETDMSGRSGMLEMFNERFPR
FT                 FARQLDLNKLYTRQRAIMSHNMLTAAEVEYIKLEVQREIGEEGTRSSDTSR
FT                 RSSVGLDAPITSESRDSPAPTAPGPTADMQRQQLRDELALHMGTAVTQFRG
FT                 TDPMSRHRIPKLRYSYRLTSAVSILNQDILPQYLEAVENLEDLQFIVYSAA
FT                 IAVVKTLGLRTRPQGEDGTRPNAQKPVWMRRLESRIATLRSKVGRLTQYKQ
FT                 GNRSTRLVRHVAEIVRPAELRDLREVDITEILDTHVQRLSALAKRLRRYGE
FT                 CSKRKEQNRMFNINEREFYNRIRNDKVDFGEGLPEIGDVTQFWANLWENPT
FT                 EHDGDGMWLAEEERQCDGIGDMTAVVVTAQDIREATRYTRNWAAPGPDFVH
FT                 NFWYKKLTTIHGRMAECFNTVLGDPTQLPEFITRGVTFLLPKDQHTADPAK
FT                 YRPITCLSSLYKVLSSVIARRVQAHCDANNVMTEEQKGCRRNTQGCKDQVI
FT                 VDAVIVGQATQKQRNLSMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIRL
FT                 MQHAMGMWSTSLHITDGTAVLRSRTLSIRRGIFQGDTFSPLWFCLAMNPLS
FT                 KALNQCNYGYQLKSGERSTRVTHTFYMDDLKLFAESVQRLHQLLQLVTTFS
FT                 NDIRMEFGIDKCRSIHLRRGQVMDASCFRVNEQEEIRNMVEGETYKYLGFL
FT                 QLRGIRHTMIKKELQEKFLSRVNCILKSFLSAGNKVKAINTFAVPLLTYSF
FT                 GVVKWTKTDLEAIERAVRVAFTKHRMRHPKSSIERVTLPRAAGGRGVTDIQ
FT                 ALCVSQIQQLRAYFVESQNRHEIYRTVCEADHGFSALHLAQEDYQLNCDIK
FT                 TVDEMIAMWKQKELHGTHPHQLELEHIDKVASNTWLVRGDLFSETEGFMVA
FT                 IQDRVIATKNYRHYILHEDVEDRCRKCNSVGETIEHVVAGCSVLAGSAYLD
FT                 RHNEVAKIVHQQLALKHNLVDRFVPYYKYLPDPVLENSCIKLYWDREIITD
FT                 VLIRANRPDIVVYDKRMKRVTLIDIAVPLDHNVQSTFSNKIAKYHDLAEEL
FT                 KQMWHLEDVRIVPVVLSATGIVPKSLLRSLDELELKKDLHSIQKAVILGTC
FT                 SIVRRFLNHHN"
XX
SQ   Sequence 4004 BP; 1128 A; 966 C; 1099 G; 811 T; 0 other;
     ggtgggagct caggcaacat aactcctggg cgtccatgaa aaaccaccat cttgagtagg        60
     tgggagcttg aggtaaaata tcctgggcgt ccatgtaaaa ccaccctcgg cgagcagcgg       120
     cgcttgaacc aagctattaa gcactgtaat tggaggaaat gccaatgcag aacccgtagc       180
     ttccgggaat gaaagcaaac ccagcaatgg agacacgatc aatgaggaat agaagaatgc       240
     gatcgcccga ggagggagcc cctactggag ctggtcctgg gacgggggac agagcgagcg       300
     gccagcggct ggaagaggat aatgtgcaag agcggccttc cagtcaacgg gcacagcccg       360
     taccgcgaac gcgaaacaga aacggcagca gcagaaatca ccaaggccat gctgcaccta       420
     ccgatgttgc tgtggctgat agacgtcagt cactcacgtt ggcaggcggc cgacggcagc       480
     ggatcatgtg gacgagggag atgaatatgt atgtgattcg ctgctactat gtctgcacaa       540
     ggatggagac ggacatgtct ggcagatcag ggatgctgga gatgttcaac gagcgatttc       600
     ctcgctttgc gcgccagctt gacttgaaca agctgtacac acggcagcgt gcaattatgt       660
     ctcataatat gctcaccgct gcagaagtgg agtacatcaa gctggaagtg cagagggaga       720
     taggagagga ggggacaaga tcgagcgata cgtcgagaag gagttctgtt gggctggatg       780
     caccgatcac gagtgagagt cgtgattcac ctgcacccac tgctccagga ccgacagcgg       840
     atatgcaacg acagcaatta cgagacgaac tagcactcca tatgggcaca gcagttacgc       900
     agttccgtgg gacagacccc atgtcccggc accggatacc aaagctgcgg tattcctacc       960
     ggctgacgag tgcagtaagc atcctaaatc aggatatttt gccacagtac ttggaagccg      1020
     tggagaacct tgaggatctg cagtttatcg tgtattcagc tgcaatagct gtagttaaga      1080
     cgttgggatt gcgaacgcgc ccgcaaggag aagatggcac acgccccaac gcacagaaac      1140
     ccgtatggat gcgacgcctt gagagccgaa tcgcaacact gcgatcaaag gttggtcgat      1200
     taacacagta caagcagggg aatcgatcaa cgaggctggt tcgtcatgtt gctgaaattg      1260
     ttaggcccgc agagctccga gatctcagag aagtcgacat tactgagatc ctcgacaccc      1320
     atgtacagcg gttgagtgct cttgcgaaac gattgcgacg ttatggagaa tgttcgaagc      1380
     ggaaggaaca aaaccggatg ttcaacataa acgagaggga gttctacaac cgcatccgaa      1440
     atgacaaggt cgactttggc gagggacttc cagagattgg cgacgttaca caattttggg      1500
     ccaatttatg ggagaacccc accgaacacg acggcgatgg gatgtggtta gcagaagaag      1560
     agagacaatg tgatggaatt ggagacatga ccgcggtcgt ggtaaccgct caggatatac      1620
     gtgaagctac ccggtatacc aggaattggg ctgcaccagg acctgatttt gtgcacaatt      1680
     tttggtataa aaaactcaca acgatccatg ggcggatggc ggaatgcttc aatacggtac      1740
     taggagaccc cacgcagcta ccggaattca tcaccagggg tgtcacattt cttctgccaa      1800
     aggaccaaca cacagctgac ccagcgaagt acagaccaat aacgtgcctt tcaagtctgt      1860
     ataaagtgct atcgtcggta atagcgagga gggtgcaagc ccattgcgac gccaacaacg      1920
     tgatgaccga ggaacagaaa gggtgtcgca gaaacacgca aggctgcaaa gatcaggtca      1980
     tcgtagatgc agtcattgta gggcaagcta cccaaaagca aaggaacctg agtatggcgt      2040
     acatcgacta caaaaaggca tacgactcag taccgcactc gtaccttctc aaggtactgc      2100
     agttgtataa ggtagacggg aacgtcatca ggctgatgca acacgcgatg gggatgtgga      2160
     gcacatccct acacattacc gacggtacag ctgtgttacg gtccaggact ctcagcatca      2220
     ggagggggat ttttcaaggc gataccttta gtccgctgtg gttttgcctg gccatgaacc      2280
     ccctcagcaa agcactcaac caatgcaact atggctacca actgaaaagt ggggaaagga      2340
     gcacaagagt tacccacacc ttctatatgg acgacctgaa gctatttgcg gaatcagtgc      2400
     agaggctgca tcagctgttg cagctagtta cgacattcag taacgacatc cggatggagt      2460
     ttggtattga caaatgcagg tcaattcatc tacgtcgggg tcaagttatg gatgccagct      2520
     gtttccgcgt caacgagcag gaggagattc ggaatatggt tgaaggcgaa acgtataaat      2580
     accttggatt cctgcaactt agaggtattc gccacacgat gatcaagaag gagctgcagg      2640
     aaaagttttt gtcacgtgtc aactgtattc tgaagagctt tctgtctgcc ggcaacaagg      2700
     tgaaggcgat caacacgttt gctgtgcccc tgttgacgta tagtttcggg gtggtaaagt      2760
     ggaccaagac tgacttggag gcgatagaac gagcagtacg agtggcgttc accaagcacc      2820
     gaatgcgcca cccaaaatcg tccattgaga gagtcaccct gccacgtgca gcaggaggaa      2880
     gaggcgtcac cgatatccag gcactatgtg tctcccagat ccagcagctg cgggcatatt      2940
     tcgtagaaag ccagaaccgc cacgaaattt accgcactgt atgcgaagct gaccacggct      3000
     tcagcgccct gcatctggcg caggaggatt accagctgaa ctgcgacatc aaaaccgtcg      3060
     atgagatgat cgcaatgtgg aagcagaagg agttgcatgg aacgcacccc catcaactgg      3120
     agctcgagca catcgataag gtggcgtcaa acacgtggct ggtgcggggt gacctcttct      3180
     cagaaacaga aggtttcatg gtagccatcc aggaccgggt aattgcgacg aagaactatc      3240
     ggcactacat attgcacgaa gacgtggagg accgctgtag gaagtgcaat tcagtagggg      3300
     agactatcga gcatgtcgtt gccggctgtt cagtactagc tggatcagcc tacctcgatc      3360
     gtcacaacga agttgccaag attgtgcatc aacagcttgc ccttaagcac aacttggtgg      3420
     atcgatttgt gccctactac aagtacctgc ctgacccggt tctggaaaat agttgcataa      3480
     agctgtactg ggatcgcgag atcataacgg acgtcctcat ccgtgccaac cgccccgaca      3540
     ttgtagtcta cgacaaaagg atgaaacgag ttacactcat cgacatcgct gtaccgctgg      3600
     accacaatgt ccaatcaacg ttctctaaca agatagcgaa gtaccacgac ttggcggagg      3660
     agttgaagca gatgtggcac ctagaggacg tccgtatagt tccggtagtc ctctcagcga      3720
     ccggaattgt cccgaaatct ctcctaaggt ccctagacga gctggaattg aagaaggacc      3780
     tacacagcat ccaaaaagcg gtgattcttg gaacctgcag catagttaga cggttcctga      3840
     accaccacaa ctgagaagct catccagcag actcattagg ataagttaaa ccgaccaatg      3900
     agatccacag agcctaatcc cctttggcat acagattgcc cggggtaggt gaaagtttcc      3960
     agcatttttt gctgagaagt gccaaaactc tataataata ataa                       4004
//
ID   DongAG      repbase;    DNA;    INV; 3848 BP.
XX
AC   AB097127;
XX
DT   04-JUN-2009 (Rel. 14.06, Created)
DT   04-JUN-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   Anopheles gambiae non-LTR retrotransposon DongAg - a partial
DE   sequence.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; DongAG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3848
RA   Kojima K.K. and Fujiwara H.;
RT   "Cross-genome screening of novel sequence-specific non-LTR
RT   retrotransposons: various multicopy RNA genes and microsatellites
RT   are selected as targets.";
RL   Mol Biol Evol 21(2), 207-217 (2004).
XX
DR   EMBL/GenBank/DDBJ; AB097127; Positions       1    3848.
XX
FH   Key           Location/Qualifiers
FT   CDS           18..3644
FT                 /product="DongAG_1p"
FT                 /note="reverse transcriptase and restriction
FT                 enzyme-like endonuclease domains."
FT                 /translation="METRSMRKRTTRLPEEGAPTGAGPGTGDRASIQRLED
FT                 EMVQERSFSQRALPVPRTQNRNGSPINHQGNAASANVAVADRQQSLILAGG
FT                 RRQRIMWTREMNHYVIRCYYVYTRMETDMPGRVKMLGMFNDRFPRFAHQLD
FT                 LSKLYIRQRAIILPEELEFIKLEVRREFGEEEAGWRESSRISARLNTIDQN
FT                 TSRASEDRDLDEPTAPGLSVDIQHQMATAVTQFHGTDPLSRHRLPKLHYSY
FT                 RLKTAVSIINQDVLPQYLDSVGSIEDLQLIVYSAAVAVVRTLWLRTYPQGD
FT                 SEGRPCSKAEKPAWMRRLENRINATRTKIGRMQEYQRGNSSMKVVRQIAEM
FT                 VKPKELRDLTDANITEVLDIHLQRLSALAKRLRRYAECSKRKEQNRMFNIN
FT                 EREFYNWIRNDKPNFREGLPDIGDFTQFWANLCEKPVQHNSEGMRLAEDER
FT                 FSDGIEDMPVLVVNAQDIREATQYTRNGAAPGPDFVYNFWYKKLITIHEQI
FT                 AACFNTVLEDSRKLPKFITGGVTYFLPKDQNTKNPAKYRPLTCLSNLNKVL
FT                 SSVITQKVKDHCDTNNVMTEEQTGRRKNTQGCKDQVIIDAVIVGQAAKKQR
FT                 NLDMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIKLMQHAMGMWSTSLHV
FT                 TDGKVVLRSRSLNIRRGIFQGDTFSTLWFCLAMNPLSRTLNQQCNFGYLLK
FT                 SEEISTRITHTFFMDDLKLFAETVQKMHHLLKNVQGFSNDIKMEFGIGKCR
FT                 SIHLHRGQVLDADSFRANEQEEIRHMVQGETYKFLGFLQLRGIHYAVIKKE
FT                 LQDKFLHRVSCILKSFLSVGNKVKAINTFAVALLTYSFGVMKWSNTDLEAL
FT                 ERTIRVVSTKHQMRHPKASVERVILPRKIGGVGIIDIQALCISQIHQLRSY
FT                 FVESQNRHELYRTVYKADHGLSALHLAQQDYQLNCNIKTVDGKGATWKQKE
FT                 LHGTHTHQLNLEHIDKVSSSTWLVRCDLFCETEGFMVAIQDRVIATWNYRR
FT                 CILREDVEDRCRKCNSGGESIEHVIAGCPVLAGSAYLDRHNDVAKIVHQQL
FT                 ALRHKLVERFLPCYRYLPDPVQENDCIKLYWDREIITDILIRANRPDILVY
FT                 EKRKKRATIDIDIAVTLDHNVQTTFSTKVMKYHDLAEELKQTWYLEDIRIV
FT                 PVIISATGIVPMALLRSLDELELQRELPRIQKAVILRTCSTLRRFLNPYN"
XX
SQ   Sequence 3848 BP; 1202 A; 816 C; 947 G; 883 T; 0 other;
     gaaggctaac cacaataatg gagacacgat ctatgagaaa aaggaccaca cgattgcccg        60
     aggagggagc ccctactgga gctgggcctg ggacgggaga cagagcaagc atccagcggc       120
     tggaagatga aatggtgcaa gagcgttctt tcagtcaacg ggctctgccc gtaccacgaa       180
     cgcaaaacag aaacggcagc cctataaatc accaaggcaa tgctgcatct gctaatgttg       240
     ctgtggctga tagacaacag tcactcattt tggcaggagg ccgacggcag aggattatgt       300
     ggacgagaga gatgaaccat tacgtgatcc gttgctacta tgtttacacg aggatggaga       360
     cggacatgcc cggcagagtg aagatgctgg gtatgttcaa tgaccgtttc cctcggtttg       420
     cgcatcagct tgacctgagc aagttgtata tacggcagcg agctattatt ttgcctgagg       480
     aactggagtt catcaagctg gaggtgcgga gggaatttgg agaggaagag gcaggctggc       540
     gcgagtcgag taggatttct gctaggctta atacaataga ccaaaataca tcaagggcga       600
     gtgaggatcg tgatttggat gaacccaccg ctccaggatt gtcagtggat atccaacacc       660
     agatggccac agctgttacg cagttccatg ggacagaccc cttgtctcgt caccgactac       720
     caaaactgca ttattcttac cgcctgaaaa cagcagtaag catcataaac caagatgttc       780
     tacctcagta tttggatagc gtagggagca ttgaggatct gcagttaatt gtgtattcgg       840
     ctgcggtggc tgttgtacga acgctatggt tgcggaccta tccgcaagga gacagcgaag       900
     gtcgaccatg ctccaaggct gaaaagcccg cctggatgcg acgtctagaa aaccggatca       960
     acgcaacacg gacaaagatt ggtcgaatgc aggaatatca acggggaaat tcatctatga      1020
     aggtggtacg tcagattgct gaaatggtta aacctaaaga actacgagac ctcactgatg      1080
     ccaacataac ggaggtactc gacatccatt tacaacggtt gagtgccctt gcaaaacgat      1140
     tacgacgtta tgctgaatgc tcgaagcgga aagaacaaaa tcgaatgttc aacattaacg      1200
     agagagaatt ttacaactgg atccgaaatg ataagcccaa ttttagagaa gggctcccgg      1260
     atattggcga ctttacacag ttttgggcca atctatgtga gaaacctgtc caacacaaca      1320
     gcgaaggaat gaggttagca gaagatgagc gcttcagtga tggtatcgaa gacatgcccg      1380
     tgctagttgt gaatgctcaa gacatacgtg aggcaacgca gtacaccagg aatggagctg      1440
     caccaggacc cgattttgta tacaattttt ggtataaaaa gctaatcaca atccatgagc      1500
     agatagcggc atgcttcaat acggtgttgg aagattcgag aaaactacca aaatttatca      1560
     ccgggggagt tacttacttt ctaccaaaag atcaaaacac aaaaaatcct gcgaagtata      1620
     gaccacttac ctgtctttct aacttaaaca aagtgctgtc gtcagtgata acgcagaaag      1680
     tgaaagatca ttgcgatacc aacaacgtaa tgaccgaaga acagacagga cgtcgaaaaa      1740
     acacgcaagg ctgtaaagac caggtcatta ttgatgcagt cattgttggt caagcagcca      1800
     agaaacaaag aaatctggat atggcataca tcgattacaa gaaggcgtat gattcagtac      1860
     cccattcata ccttcttaag gtactccagt tgtacaaagt agacgggaat gtcatcaagc      1920
     tgatgcagca cgcgatgggt atgtggagta catctctaca cgttaccgac ggaaaagttg      1980
     tactacggtc aagatcactc aatatcagga ggggtatttt ccaaggtgac acctttagta      2040
     cgctgtggtt ttgtctagct atgaacccgc ttagcagaac actcaaccag caatgcaact      2100
     ttgggtattt actcaaaagt gaagaaataa gcacgagaat cacccacacc ttctttatgg      2160
     atgacttgaa gctgttcgca gaaacagtac agaagatgca ccacctgttg aagaacgtgc      2220
     agggattcag caacgacatt aaaatggaat ttggtatcgg taaatgtcga tcaattcatc      2280
     tacaccgagg tcaagtattg gatgccgata gcttccgtgc caacgaacaa gaggaaatcc      2340
     gccacatggt tcaaggtgaa acttacaagt tcctcggttt cctgcagctg aggggtattc      2400
     actatgcagt gatcaagaaa gagctacagg acaagttctt acatcgtgtt agctgtatcc      2460
     tgaagagctt tttgtcagtc ggcaacaagg tgaaagcaat aaacacattt gcggtggctc      2520
     tgttgaccta cagctttgga gtaatgaaat ggtctaatac tgacttggaa gcgttggagc      2580
     gaacaattcg tgtggtttcc actaagcacc aaatgcgtca cccaaaagcg tccgtcgaga      2640
     gagtaatcct gccacgaaaa ataggagggg taggaatcat tgatattcag gcactttgta      2700
     tttctcagat ccatcagctg cgaagttact tcgtggaaag ccaaaaccga catgaattat      2760
     accgcactgt gtataaagca gatcacggat taagcgccct gcatctagcg cagcaagatt      2820
     accagctgaa ttgcaacata aaaaccgtcg atggaaaagg cgcaacgtgg aaacagaagg      2880
     agttacatgg gacgcacacc catcaactga atctggaaca tatcgacaaa gtgtcatcta      2940
     gcacttggct tgtgaggtgt gaccttttct gtgagacaga aggtttcatg gtagccatcc      3000
     aagaccgggt aattgcgacg tggaactatc ggcggtgtat attgcgtgaa gacgtggagg      3060
     accgatgcag aaagtgcaac tcaggaggag aatcgattga gcatgtcatt gccggctgtc      3120
     cagtgctagc tgggtcagcg tatctcgatc gccacaacga cgttgccaaa attgttcacc      3180
     agcagcttgc actgaggcac aagttggtag agcgattttt accctgctac cgatacctcc      3240
     cagatccggt ccaggaaaat gattgcataa agctgtattg ggatcgcgaa attataacgg      3300
     acatcctcat ccgtgccaat aggccagaca tcttagtcta cgagaaaaga aagaaacgag      3360
     cgaccatcga catcgacatt gctgtaacgt tagaccataa tgttcagaca acattttcca      3420
     ccaaggtgat gaagtatcat gatctggcag aggagttgaa gcagacgtgg tatctggagg      3480
     atatccgcat tgttccggta atcatctcgg cgaccggaat tgtacctatg gccctcttac      3540
     gttccctgga cgagctcgaa ctgcagagag aactacccag gattcagaag gcggtgattc      3600
     ttcgaacatg tagcacttta agaaggttcc tgaatcccta taactaacat ccggtgcaaa      3660
     ctcattaaca ttaagaaaag agagaggaga aatgagaatg agattcattc acctttggca      3720
     tttgaatagc ccggggtagg tgaaaagttc ccagcatatt gctgagaagt gacaaaattc      3780
     ggataataat aataataata ataataataa taataataat aataataata ataatatgca      3840
     taataata                                                               3848
//
ID   Dorna1cons  repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dorna1cons.
XX
OS   Drosophila ornatifrons
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   guarani group; guarani subgroup.
XX
RN   [1]
RP   1-507
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Dorna1cons.
XX
SQ   Sequence 507 BP; 124 A; 130 C; 139 G; 114 T; 0 other;
     tttgggtgcc gcacgagctg acgcaaaaaa acatttttgc ccgtatggat gcatgcgaat        60
     cgcttctgaa tcgcaacaaa ttcgacccgt ttttgatgag gatggtgact ggcgatgaaa       120
     agtgggtcac ttacgacaac gtgaagcata aacggtcgtg gtcgaaagcg gtgaagctgc       180
     ccagacggtg gccaagcatg gattgacggc caggaaggtt tcttctgtgt gttttggtgg       240
     gattggcagg gaatcatcca ctatgagctg atcccctatg gctaaacgct caattcggac       300
     ctgtactgcc aacaactgga cccgcttgaa atgcagcact catgcagaag aagggccatc       360
     tttgatcaac cagaagccga attgttcttc catcagggac gacgccaggc cacacacaat       420
     cttttggtga cgcgcccaga aagctcccgg gagctcggga tgggaggttc ttttgccatt       480
     ccacccggta ctccccccgg aactgcc                                           507
//
ID   Dpalli7     repbase;    DNA;    INV; 291 BP.
XX
AC   GU229939;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dpalli7.
XX
OS   Drosophila pallidipennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   pallidipenis group.
XX
RN   [1]
RP   1-291
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229939; Positions       1     291.
XX
CC   Clone Dpalli7.
XX
SQ   Sequence 291 BP; 73 A; 68 C; 75 G; 75 T; 0 other;
     cggcccaaac cattgccaag cccagattga cggccaggaa agttttgctg cgtgtttggt        60
     gggattggta ggcaatcatc cactatgcgc tcaactatgg ccaaactttt aattcggtta       120
     tgtactgtga gcaactcgac cgtttaaagc aggctattga ccagaagcgg tcagaattgg       180
     tcgttaggaa tggtgttgag ttcaattagg acaacgctcg gcccacacat ctttgatgat       240
     tcgccagaag atttgggagc tcgaatgcga tgtcctatcg cacccaccgt a                291
//
ID   Dparag19    repbase;    DNA;    INV; 447 BP.
XX
AC   GU229942;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dparag19.
XX
OS   Drosophila paraguayensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup II.
XX
RN   [1]
RP   1-447
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229942; Positions       1     447.
XX
CC   Clone Dparag19.
XX
SQ   Sequence 447 BP; 112 A; 110 C; 122 G; 103 T; 0 other;
     gcaaaaatac atttttgccc gtatggatgc atgcgaatcg ctactgaatc gcaactaaat        60
     cgacccgttt tgaagcggat ggtgactggc gatgaaaagt gggtcactta cgacaacgtg       120
     aagcgcaaac ggtcgtggtc gaaaagcggt gaagctgccc agacggttgc caagcctgga       180
     ttgacggcca ggatggttct tctgtgtgtt tggtgggatt ggcagggaat catccactat       240
     gagctgctcc cctatagcca aacgttcaat tcggacctgt actgccgaca actgtaccgc       300
     ttgaatgcag cactctatgc agaagaggcc atctttgatc aacagaggtc gaattgtctt       360
     ccatcaggac aacgccaggc cacacacatc tttggtgacg cgccagaagc tccgggagca       420
     tcggatggga ggttcttttg catccac                                           447
//
ID   Dparag30    repbase;    DNA;    INV; 422 BP.
XX
AC   GU229943;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dparag30.
XX
OS   Drosophila paraguayensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup II.
XX
RN   [1]
RP   1-422
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229943; Positions       1     422.
XX
CC   Clone Dparag30.
XX
SQ   Sequence 422 BP; 106 A; 101 C; 114 G; 101 T; 0 other;
     tttgggtgcc acatgagttg acggaaaata tctcttggac cgaatcaacg cctgcgatgc        60
     actgctcaaa acggaacgga ctcgtctcat ttttgaagcg gatggtggct ggtgatgaaa       120
     tgtggatcac gtacgtcaaa acggcacaaa ccatcgccaa gcccggattg acggtaagga       180
     aggttttgct gtgtgtttgg tgggattgga cggggaatca tctactatga gctgcttaac       240
     tatggccaaa ccctcaattc ggtcctctac tgtgagcggc cagaattggt aaatagaaat       300
     ggtgttgtgt tccaccagga caatgctcgg actcacacat ctttgatgac ccgccagaag       360
     ctacgggagc tcagatggga tattctatcg cacccaccgt attgcccgga cctcgcgcca       420
     ag                                                                      422
//
ID   Dparam1cons repbase;    DNA;    INV; 489 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dparam1cons.
XX
OS   Drosophila paramediostriata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup III.
XX
RN   [1]
RP   1-489
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Dparam1cons.
XX
SQ   Sequence 489 BP; 121 A; 122 C; 135 G; 111 T; 0 other;
     tgggttccgc atgagttgac ggaaaaaaac atttttgccc gtatggatgc atgcgaatcg        60
     cttctgaatc gcaacaaaat cgacccgttt ttgaagcgga tggtgactgg cgatgaaaag       120
     tggatcactt acgacaacgt gaagcgcaaa cggtcgtggt cgaaaagggg tgaagctgcc       180
     cagacggtgg ccaagcctgg attggcggcc aggaaggttc ttctgtgtgt ttggtgggat       240
     tggcagggaa tcatccacta tgagctgctc ccctatggcc agacccttaa ttcggacctg       300
     tactgccaac aactggaccg cttgaatgca gaactcatgc agaagaggcc atctttgatc       360
     aacagaggac gaattgtctt tcatcaggac aacgccaggc cacacacatc ttttgtgacg       420
     cgccagaagc tccgggagct cggatgggag gttcttttgc atccaccgta ttcccccgac       480
     ctagctcca                                                               489
//
ID   Dparam2cons repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mauritiana
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dparam2cons.
XX
OS   Drosophila paramediostriata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup III.
XX
RN   [1]
RP   1-490
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
CC   Dparam2cons.
XX
SQ   Sequence 490 BP; 141 A; 132 C; 118 G; 99 T; 0 other;
     tttgggttcc acacgaactg accgaaactc aggaagaacg gcgaaaagtc acctgtgaaa        60
     tgctcatcgc caggcacgat aggaagtctt tcctgcaccg aattgtgacc ggagatgaaa       120
     aatggatctt cttcgagaag cccaagctct ccagaggttg ggttaataca gatggagcgg       180
     tgccatcgac ttcaaagcca aatcgcttcg gaaaaaagac catgctctgc ctttcttggg       240
     atcaaaaagg tctggtgtac tacgagctgc tccggcccgg tgaaacggtt aaccagattc       300
     gttaccaaca acaactgaga gatttggacg taactcagct cgaaaaacgc ccataatggc       360
     accaaagaca cgagggaaaa atcttgcgcc atgacaacgc tcccgcccac agaactcttg       420
     cgacgaaaga agtgttttct gaacttggct gggaagtctt accccacccg ccgtactccc       480
     cggacctcgc                                                              490
//
ID   Dpauli6     repbase;    DNA;    INV; 493 BP.
XX
AC   GU229937;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mauritiana subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dpauli6.
XX
OS   Drosophila paulistorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-493
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229937; Positions       1     493.
XX
CC   Clone Dpauli6.
XX
SQ   Sequence 493 BP; 157 A; 128 C; 115 G; 93 T; 0 other;
     ttgggtgccc cacgaactga aaccaagaga cattgaaagg cgattatgca ttgctgaaca        60
     actgcttgca agacaacaaa gaaagggttt ttttgcaccg aattgtgaca gggatgaaaa       120
     gtggatccat tacaacaacg aaacccggcg caaatcttgg ggtaagcccg gtcacaaagc       180
     agtatccact ccgaaaccca atttccatgg aaccaaggtt atgctctgtg tttggtggga       240
     ccagctaggc ccgatccact acgaattgct gaaacagggc cagactatca acggggagct       300
     ctaccgacaa caattgagcc gtctgagccg ggcactcaaa gaaaaaaggc cacaattcga       360
     agaaaggcac gacaaagtca ttcttcagca agacaatgca agaccacaca ccagcagagt       420
     ggtcaaagat tacctcaacg agctgaaatg ggagattttg ccccaccccg ctatactccc       480
     tgatctcgcg cct                                                          493
//
ID   DPSAT1      repbase;    DNA;    INV; 324 BP.
XX
AC   M31307;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.pulchellus satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; DPSAT1;
KW   Satellite repetitive element.
XX
OS   Diadromus pulchellus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Ichneumonidae; Ichneumoninae;
OC   Diadromus.
XX
RN   [1]
RP   1-324
RA   Bigot B.Y., Hamelin H.M. and Periquet G.;
RT   "Heterochromatin condensation and evolution of unique
RT   satellite-DNA families in two parasitic wasp species: Diadromus
RT   pulchellus and Eupelmus vuilleti (Hymenoptera).";
RL   Mol. Biol. Evol 7(4), 351-364 (1990).
XX
DR   GenBank; M31307; Positions       1     324.
XX
SQ   Sequence 324 BP; 87 A; 75 C; 79 G; 83 T; 0 other;
     gataatttcg agccagctac tttcgtttag ccagaaaagt gcttttcgct tgaaacggca        60
     aatcctgctt tctgagcgct gtagagatgc gggcctgccc aaaaccccct agctctcttc       120
     atttggtgta actatgcatg aatcaaaaga gaaacccgat cccgagcttt ataattgctg       180
     ggaaaacgcg ttttaggcga aaacgcgagt acggtcgatt tgcgtcgaaa agcaaaaaac       240
     ctgctttctg agcgctgtta aggccgggga tcgctgtaaa ccctctgagg cgtttcaatt       300
     agtcaaactg tacggtggaa cagt                                              324
//
ID   DSAT        repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   09-AUG-1999 (Rel. 4.07, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Drosophila tandemly repeated satellite DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; DSAT; tandem repeat.
XX
NM   DSAT.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RA   Bachmann L.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (05-NOV-1991)L. Bachmann,
RL   Institut fuer Biologie, Lehrstuhl Fuer Populationsgenetik,
RL   Universitaet Tuebingen, Auf der Morgenstelle 28, D-7400
RL   Tuebingen, FRG.
XX
RN   [2]
RA   Bachmann L. and Sperlich D.;
RT   "Gradual evolution of a specific satellite DNA family in
RT   Drosophila ambigua, D. tristis, and D. obscura.";
RL   Mol. Biol. Evol 10(3), 647-659 (1993).
XX
RN   [3]
RP   1-182
RA   Jurka J.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 182 BP; 54 A; 35 C; 44 G; 49 T; 0 other;
     ctgcagagtt agagtgaaac agggatattt actggcagat tacgttatag tggctatatc        60
     ctttatgtcc tgcaatccaa attgattgca aaagatcctg cacattctcc agaaggcatt       120
     gacacattca ggacgttgta cagatggcta ggaggcgtgg catgtcctga tccgataaga       180
     aa                                                                      182
//
ID   Dtripu1cons repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dtripu1cons.
XX
OS   Drosophila tripunctata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup IV.
XX
RN   [1]
RP   1-491
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Dtripu1cons.
XX
SQ   Sequence 491 BP; 154 A; 109 C; 111 G; 115 T; 2 other;
     cttgggtgcc gcacgagtta tcaaanaaaa acatactgga ccgaatttcc atctgcgaat        60
     cttggtcgaa acgtaatgaa atcgacccat ttcttaagcg gatggtgatt ggtgatgaaa       120
     agtgggtcac ttacgacaat gttgttagaa aacgantcct ggtcaagacg cggtgaatca       180
     gctcaaacgg tatccaaacc aggactaact gccaggaagg ctttgctgtg cgtttggtgg       240
     gattggaagg gaatcatcta ccatgagctg cttccatatg gacaaaccct taactcagac       300
     ctctattgtc aacaattaga ccttttgaag aaagcaattg acaaaaagcg accagaattg       360
     gccaatagaa aaggaattgt ctttcaccag gacaaggcta gaccacacac atctataatg       420
     acgctcaaca aacttaggga gctcggatgg gaagttttaa tgcatccacc gtactcaccg       480
     gaccttgcac c                                                            491
//
ID   Dtripu2cons repbase;    DNA;    INV; 501 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of irritans
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Dtripu2cons.
XX
OS   Drosophila tripunctata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   tripunctata group; tripunctata subgroup IV.
XX
RN   [1]
RP   1-501
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
CC   Dtripu2cons.
XX
SQ   Sequence 501 BP; 161 A; 110 C; 113 G; 117 T; 0 other;
     tgggtaccgc acgagctcac agttgaccaa aagcaacaac gagtggatga ttctgagcag        60
     tgcttaaagc tgttcaatcg tcaaaagtca gagtttttgc gtcgatatgt gacaatggat       120
     gaaacgtggc ttcattattt cactccggag tccaatcgac agtcagccga gtggactgca       180
     cgcgatgaac cgactccaaa gcgtggaaag acgcaacagt cagctggcaa ggttatggcg       240
     tcagtatttt gggatgcgca tggtataatt ttcattgact acctcaaaaa aggaaaaacc       300
     atcaatagtg actattatat agcattattg gagcgcttaa aggaagaaat cttggaaaaa       360
     cggccccatt tgcaaaagaa aaaagtgctg tttcaccagg acaatgcacc gtgtcacaaa       420
     tccatgaaaa cgatggcaaa attaaatgaa atgggcttcg aattgcttcc gcatcctcca       480
     tatactcccg acctagcccc a                                                 501
//
ID   DTSAT1      repbase;    DNA;    INV; 181 BP.
XX
AC   X64687;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.tristis tandemly repeated satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; DTSAT1; satellite repeat;
KW   Repetitive sequence; tandem repeat.
XX
OS   Drosophila tristis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-181
RA   Bachmann L.;
RT   "DTSAT1.";
RL   Direct Submission to Genbank (05-NOV-1991)L. Bachmann, Institut
RL   fuer Biologie, Lehrstuhl Fuer Populationsgenetik, Universitaet
RL   Tuebingen, Auf der Morgenstelle 28, D-7400 Tuebingen, FRG.
XX
RN   [2]
RP   1-181
RA   Bachmann L., Raab M. and Sperlich D.;
RT   "Evolution of a telomere associated satellite DNA sequence in the
RT   genome of Drosophila tristis and related species.";
RL   Genetica 83(1), 9-16 (1990).
XX
DR   GenBank; X64687; Positions       1     181.
XX
SQ   Sequence 181 BP; 47 A; 33 C; 44 G; 57 T; 0 other;
     gaattccaat tcgcattttg attgtggtgt tgcggatatg gattgcagat tattgtgcca        60
     tatatacatt ttgcagcagg agataggtgg ctagggcctt ccaggaaatg tgtcgccaga       120
     atatatgtcg ctatgcctgc agggcatatt aaactgcaat cttgatccca aatttcaatc       180
     g                                                                       181
//
ID   EcoRI_HA    repbase;    DNA;    INV; 329 BP.
XX
AC   D38086;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Hemitaxonus athyrii DNA, EcoRI family (pHAE family) of tandemly
DE   repetitive DNA sequence.
XX
KW   EcoRI family; EcoRI_HA; tandem repeat.
XX
OS   Hemitaxonus athyrii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Tenthredinoidea;
OC   Tenthredinidae; Selandriinae; Hemitaxonus.
XX
RN   [1]
RA   Sonoda S., Yamada T., Naito T. and Nakasuji F.;
RT   "Repetitive DNA sequence families in Hemitaxonus minomensis and
RT   H. athyrii (Hymenoptera; Tenthredinidae).";
RL   Jpn. J. Genet 70(1), 7-16 (1995).
XX
DR   Genbank; D38086; Positions       1     329.
XX
SQ   Sequence 329 BP; 104 A; 51 C; 63 G; 111 T; 0 other;
     aattctatcg cctataggtg tttcttatgc agaattatct caggaatgca acaaaccgag        60
     tctcattgtt gtgcgatact cagggaataa gatatcgaca attttcagga ttctcgattt       120
     tcgcaaaaat cataaggggt tagccttact tttttttcga cgaaaaaaaa agttgactgg       180
     aatttatttc tttccgggtg tttcttgtag agaataatct cacgaatcca aaaaacgcag       240
     tctcgttgtt gtgcgataat taggagaaaa gatattcaag attcactgaa tttttttatt       300
     tttctaaaaa tcggagaaat gtaggtcag                                         329
//
ID   ECORI_Hm    repbase;    DNA;    INV; 334 BP.
XX
AC   D38085;
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Hemitaxonus minomensis, EcoRI family (pHME family) tandem repeat.
XX
KW   ECORI_Hm; EcoRI family tandem repeat; pHME family.
XX
OS   Hemitaxonus minomensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Tenthredinoidea;
OC   Tenthredinidae; Selandriinae; Hemitaxonus.
XX
RN   [1]
RA   Sonoda S., Yamada T., Naito T. and Nakasuji F.;
RT   "Repetitive DNA sequence families in Hemitaxonus minomensis and
RT   H. athyrii (Hymenoptera; Tenthredinidae).";
RL   Jpn. J. Genet 70(1), 7-16 (1995).
XX
DR   Genbank; D38085; Positions       1     334.
XX
SQ   Sequence 334 BP; 118 A; 52 C; 56 G; 108 T; 0 other;
     aattctgtat tttctcagaa tagactctga aaaatggaat cgcaataccg ctattttatg        60
     caaatcaatc ttgtggattc gaggacgtta gtaaaataat gtgagagcaa taaaaaaaag       120
     aaatcaatga tttcatacat tttcatttca tgcaattttt tttttcacga aaatattccg       180
     aggaatgggt ttgtgacgac actttctcat gaagaatgat tccagtaatt cgaaaatatg       240
     atcaaaatca ccgtacgacc aaaagaactg gagtattcga tgatttcatg tcttttcgta       300
     tttcacgcaa aatatttcaa aaaatgggtc gctg                                   334
//
ID   ECORI_TB    repbase;    DNA;    INV; 385 BP.
XX
AC   AF093063;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Trichogramma brassicae EcoRI satellite monomer, complete
DE   sequence.
XX
KW   SAT; Satellite; Simple Repeat; ECORI_TB; EcoRI; satellite repeat;
KW   tandem repeat.
XX
OS   Trichogramma brassicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Trichogrammatidae; Trichogramma.
XX
RN   [1]
RA   Landais I., Chavigny P., Castagnone C., Pizzol J., Abad P.
RA   and Vanlerberghe-Masutti F.;
RT   "Characterization of a highly conserved satellite DNA from the
RT   parasitoid wasp Trichogramma brassicae.";
RL   Gene 255(1), 65-73 (2000).
XX
DR   Genbank; AF093063; Positions       1     385.
XX
SQ   Sequence 385 BP; 118 A; 74 C; 64 G; 129 T; 0 other;
     gaattccaag tgtcgtgtaa aaatttcaaa tcgatcccgc aaaccctcga aaagttatac        60
     ccgtttaaag tcactttttg gcccaaaaat gccacattaa taaggttatc tttggttcta       120
     acggtcggat tgactcgaaa atttttatgc acgtctagaa ttggataatt tatgacctta       180
     caacttgatc gaaaggttac aaataaaact ctgaaaactt ttcacggtca tcgtgacttt       240
     tcgaaataaa agtaatttca tcttttgcgg tcttcgtgac acttccggct ggtgatacaa       300
     cttttgtccg gtctagaatt ttttgaatat atcttccgct ctaatggtcc gattgactta       360
     aaaattggtt tacagacaca aaatt                                             385
//
ID   EnSpm-10_DTa repbase;    DNA;    INV; 3393 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3393
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 2-bp TSD. 99% identical to another copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(550..2020,2371..2606,2669..2731)
FT                 /product="EnSpm-10_DTa_1p"
FT                 /translation="MSLKRKRRNYICESKHIINSTAKINTVEKHAADISFP
FT                 EEFCDSVSDCSNVLVENSEPKSFNTRLGQWMSENNISRRPANDLLQLLSEK
FT                 IPGLPRDVRTLKCTPRAVIQRDVAPGSYFHYGVKDALTDFLSNSSYLSNSV
FT                 SLNINVDGLPLFKSSLKQAWPILININGTKSVLVAGIYVGNSKPKDPNIYL
FT                 EEFVTELVKLIHDGMMHQGRKLLIGIRSIVCDAPARAYILGVKHHTGFFAC
FT                 NKCTQKGKSFQRRMVFEFSENTLRTDYSFQNRLQHHNLQNKLALENLPIDM
FT                 VNQFPFDYMHVACLGIMKTLLVALVRVKGHRFSLSRPTISLISSKLISFRR
FT                 FIPREFNRKPRSLDDLERFKATEFRTFMLYTGPIVLRNSLDKTRYHHFLLF
FT                 SLGMRLLLHKEYCITKNQLASSLLNDFVKQLPLLYLLSMLTFNFHSLTHLS
FT                 AQSLAFGSLETISSFPFENFLGQLKNMVKKSDFVIEQLYNRIVERTILDKL
FT                 IRIDKKIDIIMTKLDRNTIEMVALRSEISVIKAKICGELQTPKVAMPIESF
FT                 KTVVELDSFEEMLKDEAFFKKLISELMMSGEKAFDKWIRSSWR"
XX
SQ   Sequence 3393 BP; 1114 A; 594 C; 621 G; 1064 T; 0 other;
     cccagcggac caaggcgcga tagtatagcg aaactatcgc aaaatgttcg taaacggact        60
     tagaaacgat agaaatccgc gagcttttac taaagtctcg ttaaatgttc gcaaacggac       120
     tcaaaaacga gcgttaagta aacaaaaacc gggcgacatt attttcagcc ttgtgtcctg       180
     ttttcagtca cttttgagct cgtttgccat agttttgcga gactttccat ggctgatgcg       240
     cagtttctcg ttcgtttctt ttcgtttctt ttgtgcgtgt gttcttttgt gcttagaaac       300
     ttgcagagtg cagtcgtata aaagccgaaa ttgtttaaaa gtgatttatt aaaaaaacaa       360
     aatctgtaat taaattataa ttgagtgttt agttcagtgc tgtgacccaa agagtgagtt       420
     aaaacggctt taaaaccaaa aaacaaaaca gaaataaatc aaaaatcaca tgtgcgttct       480
     tcttcgtttt tcagccttct tcttggaatt ttgcggtgga agtaaagaga agagcaatag       540
     aatttaataa tgtcattaaa gcgcaagagg aggaattata tatgcgaatc gaaacatata       600
     ataaacagta ctgctaagat aaatactgtt gaaaaacatg cggcagatat tagttttcca       660
     gaggaatttt gtgatagtgt ttctgattgt tctaatgttt tagttgagaa ttccgaacca       720
     aaaagtttca atactcgtct aggtcagtgg atgtctgaaa ataatatcag cagaaggcca       780
     gctaatgatt tgcttcagtt gttgtctgaa aaaattcctg gcttgccacg agatgttcgt       840
     acattaaaat gcacaccacg tgcagtaatt caaagggatg tagctccagg aagctatttt       900
     cactacggtg taaaagacgc gctaactgat tttttaagta atagtagcta tttatctaat       960
     agcgtaagcc taaatataaa tgtagacgga cttccgttgt ttaaaagttc tcttaagcaa      1020
     gcctggccca ttttaataaa tatcaatggc acaaaatcag ttcttgtagc tgggatatat      1080
     gttggcaatt ccaaacccaa ggatcccaat atttatttag aagaattcgt caccgagcta      1140
     gttaaattaa ttcatgatgg catgatgcat caaggtagaa aacttcttat tgggattaga      1200
     tctatagttt gcgatgcacc agcacgtgca tatattttgg gtgttaaaca tcatacagga      1260
     ttttttgctt gcaacaagtg cactcaaaag ggtaaaagtt ttcaaaggcg aatggttttt      1320
     gagttttcag aaaacaccct tcgaacagac tatagtttcc aaaatcgctt acagcatcat      1380
     aacctacaga ataaactagc tttagagaac ttgcctattg atatggtcaa tcagtttccc      1440
     tttgattata tgcatgtagc ttgtcttggc attatgaaaa cactactagt ggcattagta      1500
     agggttaaag gtcaccgatt ttctttgagt cggcctacaa tcagcctaat aagttctaaa      1560
     ctcatttcgt ttagaagatt tattcctagg gagttcaata gaaagccgag atctcttgat      1620
     gatcttgaaa gattcaaggc aacagaattc agaacattta tgctgtatac tgggcccatt      1680
     gtgttgagaa actctctaga caaaacccgc taccatcact ttttactatt cagccttgga      1740
     atgcgtcttc ttcttcacaa agaatattgt atcaccaaaa accaacttgc atccagttta      1800
     ctaaacgatt tcgtaaaaca acttcctttg ttatatttgt tgtcaatgct aacttttaat      1860
     tttcattccc taacacattt aagcgcgcag tcacttgcct tcggctcttt agagacaata      1920
     agttcttttc cattcgaaaa ttttctaggc caattaaaaa atatggttaa aaaatctgat      1980
     tttgtcatag agcaattgta taatcgtatt gtagagcgaa gtattttaaa cgttgtgccc      2040
     aaaagcaaat tgctggattt taaaaacacc acaaataaaa ttttctacaa agatttattt      2100
     tttgatttga aagaatcaaa tagtttttac tttattagag atagcactac atacaacata      2160
     tttaaaattt gtaacattca aaataaaact ttgcatagcc gattagttgt ggatcttgaa      2220
     cctttttttg ttttcccaat agactcaact cttgccggca tattttcttc aaaaaatata      2280
     aattacgata gcaatgtatt gcagcattca atagaaaaca tttctggaaa aatcttacat      2340
     atattcgata caattatgtt ttttttacag ctatcttaga taaattaata agaattgata      2400
     agaaaattga cataatcatg actaagctcg atcgcaacac aatagaaatg gtggctcttc      2460
     gatctgaaat atcagttata aaggccaaga tttgtggaga actccaaacg ccaaaagtcg      2520
     cgatgcctat tgagtccttt aagacagttg tcgaattgga cagttttgag gagatgttga      2580
     aggatgaagc attcttcaaa aagttggtaa gtagtcataa tcagcaactc acgagttaaa      2640
     tttaactttt atgtaatatt ctatacagat ttctgaactt atgatgtcag gcgagaaagc      2700
     gtttgacaaa tggattcgaa gctcttggcg ctgaatagtg tccgacgacc tcgcacggct      2760
     gtactcttgg cgtggaaccg aggccaagaa atgtataagg gggttgcgcg ttactctagc      2820
     aatccgttgt aagtattttg tatacgaata attatattac aatgcaccat attacaaaat      2880
     cgttttttta cagcgggatt taaagaaaaa ttttccctgg aagacgcgga tttcgaccgg      2940
     ataacccaga agtttttcca gtacgcccag gacaggatat ccaagagtca gaagcagaaa      3000
     gtaaacgttt aagtactcca aaagagtctc atatattaaa gagtccatat ttaaaaagat      3060
     attaaaataa aaaagaaaaa caaaaaatgt agtactgctt tcactgtagg aatgaaatgg      3120
     aatgaaacac cttttataaa atctttttcg atccgctact aatattaatt tcggatcgtt      3180
     aatgatatta aaatcgcctc gcaaaagata tcaccaaagg ctcgcaaacg atccgtttac      3240
     gagctatcga aaacgaaact ttctctgcca caaactgagc gaccagtgat tcgttttttc      3300
     atcgtttttg gattcgaggc gatagccgtt ttccgtttaa gtttcgcgta actatcgttt      3360
     gcgatatcgc taacgaacac ttggtccact ggg                                   3393
//
ID   EnSpm-1N1_BTa repbase;    DNA;    INV; 2730 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-1N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2730
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 517-517 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 2730 BP; 825 A; 534 C; 460 G; 901 T; 10 other;
     cccagttagc attttatctt cggagaatat ccctgaaaaa tcccgcgcct ccgcatcatt        60
     taaaaatatt atgacaatat cctcacaaaa accaaacaaa ataaatattg tgaggatatt       120
     ttgaaaatgt tatgaaaacg tgcaagttta taatcttctc agaacattct cagaatatcc       180
     cgtctgccgt tgcacgggtt acataatcgc ccatttgaag gcgctacaaa aactgctcgc       240
     tctctagcgg cgctcgtcaa catgtcaact cacaacaaaa caatcgtagc gccggctact       300
     ggaaatcata ttgtgttctc gtttgtgagt ttttatttca cattattcac atttgtactt       360
     cgtggaaagt ttctttattc acccacgact aaacactagg taagtaaaca tcattcatgt       420
     tcattttgac tgttgtagaa taacttttgt gttcgactga aacccattcc atgcggacac       480
     ggatacaaag ctatacatat ttcaaactct tgaaatcctc gaaatatgac ttgcattccg       540
     tctcattcta tcaatgtatg aactctggaa agaattctgt ctgtgagatg ggcaggaact       600
     tcactttcca tttccatctc tctagcacga cttgatccgt catgaaacct aaccttgcta       660
     gttcatcatt atcctccgcc aatctgtttc tagtgcttaa tattctgatt tctagacaca       720
     ttttagtgat tgtgtcacat ttagtgacag tgtgcctact gcctaaattt tacacttagc       780
     actaaaatag tctgcatgta ggagtaaaca cggatgtcag atctgggatc ttgcacagct       840
     agttttgcag aaaacttgta ttcatacttg gtgaggccag gactacacaa ttttgaaggt       900
     aggaaaggca tactttttcc tgtatttggt gtggagcgct gaatctagtt ctccgcagct       960
     tgaccatgtg tctaataatc atacctatcg acggtcaagt gttttttgcc tttctaccaa      1020
     camattgagt tttttcaact tagatcaatg actgaggcta aatccgatca tggaaatcta      1080
     tctgaaacaa tamaatagcc cactgcgtaa ctcatttaaa tgtttcattt tattttcatt      1140
     ttcagagtgg acaamcctgw tatttctatt tcatacctta cttacttact tcattcctgt      1200
     tggttcaatc acaatggcaa caacatcaat cgtaaatgtg atgagctccc aatagtcaag      1260
     gtatcttcgt ctgcgattac gatgaattgg aaccgataaa tccaacgaga aataactcct      1320
     cgtaaatgtt tgtctgctgt tttgtaccaa atttaattat ttcgaagagt gtaaagattt      1380
     tcaaatactg tttaactatc cacaagtatt catttatttt gtttctatga ttactactac      1440
     attttaaata ctaagtatga ataaagcttc ttttgttctt gaaattttgc tttcaacgta      1500
     tgtttttcca atcgtacttt ctgttcagtt ccatggagaa tggatatagg taccaatgca      1560
     tatcatgtgc aaaaaakgat tcakacaaat aagtattctc ttttaacagc taaaaccatg      1620
     cccttttcaa ggcaagctgc ttgacagcag ttcagttttg tattacgtat gtaagtaatg      1680
     tccttttgaa tctctctgaa aaaattktat acctaacttt ttacgtataa aatgagtcag      1740
     ctacagccat acaagtaggt gtcaaattgc aatgccatgc aacaagaaag aatcgcaaca      1800
     ttttgagaaa aaaatactgt ccattgagac ttgcaacgtc tcgatgcwat cgtgttttca      1860
     tggctttgaa tgttgttttt aacgactaat tttcatcgta aaatttagga tattgaaagg      1920
     aaacacctgt cttttatcca tcctagtggt tttcgatcat asgcatgttt tttctgcttt      1980
     cctcaagggc aamagaaaaa catattgctt cgcctttcag cagtggatga aatgagccct      2040
     gaattaactc cctcgaggac gttgaaagaa aatttacaac ggaccatcca acgtttccag      2100
     ctagtaaaaa tatactatcc acttttcctg acagcagtac ctaaaacgta aacaattgaa      2160
     caaaaattcg ctgatttttc aactatacat gagtagatga aaaactaaaa tcaagtgatc      2220
     ctgtttaaat ctgaacaaag caattttttt cagttttgtc ataatgtttt aagtagctat      2280
     cctcgtgaaa agtagaaaag atatttgcac aagctggaaa ggttggatgg gccatggcaa      2340
     attttctttc aacgccctca agggagttaa ttctgggctc atttcatcca ctgctggaaa      2400
     gggagggagg actataataa tacttttatg acaatgtcca cacgatatcc agtgaatatt      2460
     ttgcggattt tacgaatatc ctgaggtcat cctgacaaca tgctgtggac ttttcaagga      2520
     ttttttcaaa tatccctaga atgtccacac aatattttgg ggattttcaa atatccccag      2580
     aatattctgg ggatttcgtt ttgtctcacg aaaatgttct gagaatgttt tgagaatatt      2640
     ccggaatatt ctcgcaacat tgtcagaata tcttgaattt gcctcggaat attatcagaa      2700
     cgttctcaga atattaggct gctaactggg                                       2730
//
ID   EnSpm-1N1_DTa repbase;    DNA;    INV; 1494 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-1N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1494
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4667-4667 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1494 BP; 559 A; 194 C; 208 G; 533 T; 0 other;
     cactcaaaaa attatttttt cttaaatata gaaaaaaaaa atttttctgt gcttcaaaaa        60
     aatattctat aaagaggaaa aattttctaa tcttcagaaa aattttctaa tcttcaaaaa       120
     aattctgaat tgaacgagtt tttttagaaa atattttctg aaatacagaa aaatcaattt       180
     ttttctaaat tataaggttt atttttctaa tcatcctttc tttttttgag ggttaaaatc       240
     gccattgatt ttagaaaaaa aaagactgaa cttttctaaa actaaaaaaa aattgccatt       300
     aaaattataa atatttctac ataatagaaa tattgttttt ctaataacag aaaaattttt       360
     tgaagatttt tctaacattt tgaaaaaaat gtgtgatatt aagaaatatt tttctagaaa       420
     ataaaaaatt taaccgtatt tgatcgattt cctttcttat agacttttta gaaaagtttt       480
     ttttagccta agaaaaaatc gctattaatc gaagaaaatt tccgggattg gtagcctagg       540
     ggtctaacgc gtgcgtgcat gcatatgtta ttcaagcttg cggctgcaag agtgagttca       600
     aacccacgtc gagacgaaaa actcgtggtg tctttttttt ttttttaaca ctaatagtta       660
     catattaata aaaaaaatgt attgcatttt gtttaagttt ttcaaatttg aaacattcaa       720
     ttactgttac tattgaacca taataaataa taaatatata aatattaata ttaatcaata       780
     aatatttaaa agtaaaatta aatgataaac taaaaggaat aaccagaaga aagccagatc       840
     aatttgagta aaaataggag aacaaaatgt gaatagactt tgtacagcgc ctcacgtgat       900
     gcttccgtgg cgtagctagt agagtgcttg actgcaaact gtgaggcgcg agcggttagc       960
     ggttcgaatc ccgcgtgcgg cgaccaagat gtttttctca aaatagtaag ttattgggtt      1020
     tttatattta taatttgtaa tttgtacact catttcagtt ccaatttgaa accacccatg      1080
     tgctcaatta aaggaaatta aaataaggtg acaaacaaga acgaaaaaaa aaacaacaca      1140
     aaggccgtgg cgtcacagaa acaaccgggt ataattccga agcccgaaaa tagatttttg      1200
     tattttctga atttgagaaa tttttttttt ttatttaaaa aatatttgtc tatatttaaa      1260
     aaaaaccgta tttctatttt ttagaaaacc tttatttcta aattctaaga aataattttt      1320
     tactttctag caaaatattt ctaaattgca gtctattttt ttttgatttt tagaaaaaac      1380
     gtctttgatt ttaaaaacct actttcttta atatagacaa aatcgccagt aaagcaaatt      1440
     cataggcgat tttctaaaac caagggcgat ttcagtcgat tttttttttg ggtg            1494
//
ID   EnSpm-1_AA  repbase;    DNA;    INV; 10870 BP.
XX
AC   .
XX
DT   30-DEC-2008 (Rel. 13.12, Created)
DT   09-SEP-2011 (Rel. 16.09, Last updated, Version 3)
XX
DE   EnSpm-1_AA, a family of autonomous EnSpm DNA transposons - a
DE   consensus sequence.
XX
KW   DNA transposon; Transposable Element; Autonomous DNA transposon;
KW   EnSmp; EnSpm-1_AA.
XX
NM   EnSpm-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-10870
RA   Kapitonov V.V. and Jurka J.;
RT   "EnSpm-1, a family of EnSpm transposons in the mosquito genome.";
RL   Repbase Reports 8(12), 2107-2107 (2008).
XX
DR   [1] (Consensus)
XX
CC   EnSpm-1_AA is a young family of autonomous EnSpm DNA transposons.
CC   The consensus was built from 5 copies ~99% identical to it. All
CC   five copies are flanked by 2-bp TSDs. This transposon contains
CC   several copies of different transposable elements: pos. 2692-4554
CC   (6-bp TSD), 4616-4850 (TA TSD), 7744-7996 (TA TSD), 4851-5015,
CC   5013-5220, 6234-6408, 6593-6705,6772-6916, 10282-10495,
CC   10540-10680.These transposons will be annotated later.TIRs are
CC   only 9 bp long.
CC   Includes an insertion of Sola1-10N_AAe (masked).
XX
FH   Key           Location/Qualifiers
FT   CDS           7952..9949
FT                 /product="EnSpm-1_AAp"
FT                 /note="EnSpm TPase."
FT                 /translation="MFILMSIFIRHNLSNVALCDILELINLIVGFKSLPVT
FT                 YTEFSHFFTKNSYSRHYVCKKCELYIGETMGTCPNCESSSNFFFVTFDFVS
FT                 NLRDILTRNWDAIVEHQVKSKLSQHVTDVLNAGVATAKDIKNAITLTLNTD
FT                 GVKIFNSNVKRSLWPLIVCINDLPANIRFQRKNILIAGLWLHDGEPNLDVF
FT                 LKPFSEMIQQLYYHGLNLXSVLLERVYVIACCVDTKARCKIQNFKQFNGYE
FT                 ACSFCHHPGDIAKKQIRYSYKSHIPKRNLVDTLRAMAVSNSRGVAVNGVKG
FT                 ISPLIRIPEFDVVRNCPVDYMHGILLGVCRQLCRTWFECPTSPCYIKDKIC
FT                 SIDDMLTTIAPFVESSRNARKISDRHSWKANEWLQWLLHYSPVCLKLYLPK
FT                 EYYDHYYLLVSSITLLLGDEISTDDFKMSETMLQQFVQQFEQLYGLDEMTY
FT                 NVHLVSHLVDCSRDYGPLWAFSLFVFEDINGVLKKFVKGPREPIVQITNRC
FT                 IMSHTKNNADINFMSPSVKAFWNKLGRMPQNRKEKKVVNFHLHKSFANKYS
FT                 ENRIFEKQNSYTHNNYIFKPKSKNEYPHEKKEHNNCYFSILEGSELLYGEI
FT                 HCILNDTLGTYFFYKAIQPEEITKHYCKAQILEEFYLVRLNASLTKQIKMR
FT                 VDGNDYLSKVQYKLHID"
XX
SQ   Sequence 10870 BP; 3448 A; 1943 C; 1918 G; 3344 T; 217 other;
     cccgcatagc cgggaaccaa atgcgtactg tttgctgaat tatccacaac aatatctaac        60
     cattaatgaa cagttccacg tgtcatcaaa ttttactata tcccaacact acagtgaatt       120
     gtttttacaa tacggtatat tgtaatttgt caaattacta tgtggggaat aggcggttaa       180
     gttatgtaac aataaaaaaa tgccaatttt cccacacaaa attttgcctg aacggttggg       240
     gaaatggttg acatattatc cattttttcg taagattgac tataagtgga acggttgcga       300
     ttaagttgaa caataaaaaa aaacaagcac tatgatcatt aatgaaaaca tcgatttatg       360
     gtgggataca gtaatcttac catttatcat gttattatgt tgttgttata ctatttaaaa       420
     caataccccg tacatttagg ttatattcca acagttagat ctaaaataaa ttaattgact       480
     atatatacat gcaatggaat aaataaggac gtgcggaaaa cctacttcac tgtaaacaaa       540
     aacaaataat gttgaaagtt acttgtaaag agcacgcttc aacgatattt gtttgtgaaa       600
     tgaagtaaat tctaaccaca cgtactcaca tattccatta catctgaaag ggtttttcca       660
     acagtgaata aaaagtaaat tctaaccaca cgtactcaca tattccatta catctgaaag       720
     ggtttttcca acagtgaata aatgaacgcc aggatttctc tgttcaacga acgacgttaa       780
     catattttga taacaatgtt ttcccattac ccatttgaaa tggttaaata aaatatcgaa       840
     ttcaatacaa tatataacag tacaagaatt caattaattt gacaccaagt cagcataagc       900
     ttacttcaaa ctcgaatgtt tccagcgtct tgtccgctgc cttcaacaat tccccgagat       960
     ttgcggacct cggctgcttt gcgcaaatta gcgattttct ggcagatgta ttttctgatt      1020
     aatgttacat ccgaatgtct tcggatggtt gccatattgt cgggcccaat ccttattgcg      1080
     gtacgttcag caactttatc tgtgaaaaaa cataaaaaac acttaaaaca acttgtgatt      1140
     ttaattaaat tatttcgtaa acctaccgca aacaaactcg atgatgtttg ggtcgatttt      1200
     ctcggaggct ggatggacca agcttccatc agggtttttc agattcatga agcggcggct      1260
     agcctgtccc gtcacactca tatttgccag cctcgctgga ccgatcagcc gcgtgactaa      1320
     aagaccaaca aataagctat cattaccggc acgggcgttc agttcctcca gctcattagt      1380
     tgtgattgcg atcccgtcag cctcggtaaa atgaacctaa gaataaaaat ataagctgtt      1440
     atttaattaa taccaaattt ggaaaccaat catacacacc taaggtacct tctgcttgtc      1500
     cttaagttgc attagttcct tgccaagacg caaaccgtag tcgtctgatg ataatttctc      1560
     ttgttccaga ttggaaaact tctgtttgag tttcttatgc cgtgcaagta gttcgttgta      1620
     ccgtttctcc aaaaggtgat acttttgttc ccagttatga tgttcaataa caactacttg      1680
     agaagcggtg tctttctgaa cttcgatttg agcacttgat gggattgaaa gtgggtttgt      1740
     atttttcgca accaaaggag aacggttctg tacaacccgt ggctgagagc tgtcgagaca      1800
     acgatcatca ttaaattgtg ggctgtcctg atcaaacacg cgttgtgagt catgttgctt      1860
     gccgttttga gggttttgaa tattaatcgc cggaatgcta ttagtcctgc cagtatttcc      1920
     agctgtcggt actggtagct gagatgcagg tggctgcgtg tgattttctc gagtgtgaat      1980
     ggaacttctg gcttggatgt ttgttagcgg catttctgga gacattggtt cttgcgattt      2040
     cttggtgaca ttggtttctt cgatgtggcg cattttattt tttcagccat ttgacgcttg      2100
     agagcggctt caagctaaaa ataaatcaat ttttaattaa agaataatta ttaaaataac      2160
     gacctctatt tgaacatctc caaaattcac tttggcttca cggtttctta gatcaaattc      2220
     tcgaataagt attctaaaag atttatctgt gagaagtgcc caaacttaga ttatccattc      2280
     ctcgtattcc gcagacaaaa ttcttttatt tggcccgttg attattccac caaaatgaaa      2340
     ttagaacaaa cctgggggat gcgagctgga aatcaacaag cagccaggct gctatcaatc      2400
     ttaaattttc gtaaaaatga tctgagtgtg cctagaaatg tacggtcatt ataatttata      2460
     taacacaaag accaccaact gttaagaaaa gtacttgcag ggctggtagc agtcagacag      2520
     taaaataata gtgactttag tgaccaaaat gataaaaata gtgaccaaaa agtgaccaaa      2580
     tagtgaccta aaagtgactt caaaactaca tgtaatagtc atgaaaatga ctattatatg      2640
     tagttttatg tgggtatcaa ccaatctaca ttttgggtga atttagagtg tagagaactg      2700
     cactgcccat gttcgcatag tcgacgtaag cgccaatatg aaaattcata ttttcgttgc      2760
     tatgcatttt ttgcctaata acacactcgt tggacttgcg aacagcactt acttgttagc      2820
     acatacacca ccttatgaga atattcacac ggtttgtcta gtgtttgttc gaatagttta      2880
     gcgtataaac caaaaaaact tgatatttta gtttttttta tacaaaatag tcaaaatcgg      2940
     aagacttgag atcatgaatt aaattaaaac tgcaaagttc aataacaaac cttctaagac      3000
     tgtcttcgaa attatgcgtt agccatagac catgattgat tcctggaaaa awwtttgatc      3060
     tgrtgaaytt awgwtagatt tttttaacag aaacggtatc tttgaaaaca ttttattttt      3120
     ctcctttgaa gctggctaaa tttttgacat aaatctaaaa ttgcatctta caagcaatct      3180
     atcaaaaata tggctaagaa ttgcgtaaaa aacttaacaa aaatttgact aagattacct      3240
     aaaggacctc rcattttatt tacgttaaaa gatttttcca tgaatttatg aacaatttta      3300
     cttgaaattt gttgggaatg attgsaaaaa tacactgtaa atctgcagaa atcaatgcaa      3360
     aatctcatca ggggcctcat gagaactttg tcatagatca akgaataact aataggtaat      3420
     ccagacaagg cttcatcaaa aatcagtatc atctcagaaa tccgccaatc gtacttctga      3480
     attaatctgt caaagatttc agtgaatctc ccaagaaatt tgtcaaatat tcatttagct      3540
     caggttttca taaatggcaa tatcatcaac cataacaact tactacaact tattttggtg      3600
     gtttgtaggt ttagtgcttg gagatgttcg ttccaaatta ttttcccggt gaccatctta      3660
     aatttccggt tttcccgtct ttttccccgg tccagtagcc accctggaat tattgaaaac      3720
     taatcgtatc acttagtcac gactcgtamg ttttatctgt tttacgaccc gttttgtata      3780
     gaaatagttg acctaagatg aagtgatttc tatcaatatt agtactcgct tttgatgtcc      3840
     tggacgagtt tctaacaaac tctttgattt ttkgtttgtt attaaaatcc gtctctggct      3900
     tatctccgga aggaattttg atgaggatct ttcaaataat aggttaamga ttccttatac      3960
     agtcacatat tattgcagaa agttcactag taatttattc agcagatctg tcagataggg      4020
     caatagtatt cgccaaaatt tattaaaata ttacgactac aaaattcagc ccaaaccttt      4080
     cccagatttt ttttatattt tccgttgcaa atggctacga catattcagg attccctatt      4140
     tttttaacct taaattttca aatcatactt atttgtcttt ataataatac atatcttttt      4200
     ctttcaattt gtgtttgaaa agataaccca gctttaaatt tcaataccgt tagatcacga      4260
     aaatagtgac tttagtgacc aattttctga aaaaagttac tttgatgaca ggtcgaaaaa      4320
     tgtgagcaag tcactgaaaa gtgacttgct accagccctg tacttggtct aaattatttt      4380
     gtatccggta gaaattaggt agaaatcaag actaacactt acagtcaact ttctttcgtt      4440
     gcactaaacc cgtggcccac ctagtgaaag actttcacta atcgggctaa gtgtcaaata      4500
     accgaataga aattcagcgc taccaacatt gacaaattag ggtttatgtc agaaagtgac      4560
     gtttgccttc gttttaggtg ggctatagcc cacttaacga gagcccaatt gaaacgaagt      4620
     gcaattaaac gtagtgcaac gaacgaaatt cgactgtatt tataaatatt gtttcctcag      4680
     gccccgtgct aatatgtgaa tagtgcgctg tgttcataaa aatcgtgaga aagcagcgcc      4740
     acactaaaaa actgatttca aaatgcggcg agttgaggcg cgtcgcgagt ctcactggcg      4800
     caatccggtt tggtggcgxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4860
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4920
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4980
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xtataatctt gtataatact      5040
     caccatagca cgtatttcct caacgcccaa ctcatgagca accagttcac aagactccaa      5100
     aacattgttc tcagattgag cgtcctggtt tgtcggataa atttcagcta ccgtctgctt      5160
     gctgactccg ctaacgcttt cgccttcttc aacggccaga tgaaagggca aatcctgaag      5220
     aaacatacta ctggatgcag tttcagctgc tcccgctccg gatcctgtat cagttgatct      5280
     gtttggtgtt ggtttcagca acagtgtatc gaaaaagtta cttgctcttc caccatgcac      5340
     ggatgtttca ttttcagttc cgcttctgct ttcagtttcc tcaccatcgg atgcatcttg      5400
     atctggatca tgatctgctt gaaactcggc cagtggatct tgtgattcaa actcggcata      5460
     attcgaccca cttgccaccg acatatatgc atagccggtc ggatcgaatg tgtcgccttg      5520
     gtttgccagt gctgtttgca gctgtgaata aaaaaaaaac aaaacataag cgatattata      5580
     atttcaataa tataaactca cttaaggttt gctaattaaa aaaggtcatt taggccaaat      5640
     attccctggc ttatgaaaaa tataaaagta tacaaaacgg ccagactgag aatattagca      5700
     atattagttt gaagctcaaa aaactcacca aaacttgcaa atctgctacg ttcatctgct      5760
     gagcagccat tttgttgcat ttggcagcag gctcaatcac acgggattct gaaacaatat      5820
     ataattggta tttttctaaa attctaatta gatatactta ctttttcctc tcttagcaga      5880
     aaactcagtg gcttgctttc gttttggagg catggtgacg attttttacg aattccgacg      5940
     cgattaaaat caaaatatac agccaacttg cgcactacgg cacgtactcg ttgataataa      6000
     tgcttttttc gctttgagat atcacggttt gctacacgca ccattgagct ctcaccgagc      6060
     ggtgtcacga acactcgcgc aaatttgctg gttgaaaatt ctgccgtttg attttgctgg      6120
     gaacagttga tctttgttta tattttcaac cagcaatctt taagtagtgt tggtgacatg      6180
     taacgtgtat gtacacgagc gcagaaacca ctatatttgt tcacaaatac caatgctttg      6240
     gaatgtttgc caaactgtta taataatatt tcgtacagtt agctacgact gtatatgtga      6300
     rattcgatgt cgactgcttg agtttgcatg ggaagaagcc taacaaagga aaagcgctca      6360
     atgacaaaaa gaaataattt aattagttgt aaaaaaaata aataaaagtg gcgtcaatgt      6420
     caattgaaac agcagccaac tgtcattccc ataaaaaacg ggttccaatc gaacagtaga      6480
     cctttccaaa ctggaaaata acgacactct taggggccgt ccagtaatca cgtaagaggt      6540
     aataatgccc atactcgcac aacagtccca ggcagtaatg ggggaggaga ggtttgaggt      6600
     aacttacgcg ccatacatat tgtgttttat attcataaaa aaataaaatg gtaaggggat      6660
     gggaggtagg tatgttgaaa aaccgccaaa tttgtcttac gtaattaata gataggccct      6720
     tattcaaaga aactctacgt aatgttttaa tctgtctgga gatttacttt acactctgcc      6780
     tgatattgcg acgaattcaa gaataggtaa ttttcatttg ttaagcttga tactaaagtg      6840
     ttttgattga cacaattttg catcgaagtt cccaatttca ctccgcagaa atattttttg      6900
     aattataatt tacaatgaga cgatcacgta tgggctatat ttttgaggcc aacaaaaaac      6960
     cctccagagg acacattttg agaaaggtat gtcatgatga caactataat ttccagatgt      7020
     aaaaaacagg tattttgttt acagaaacaa cgccggaaca ttccagctcg tgagcccagt      7080
     tatggaaacg aagtccacgg cgaacaatcc caggaaatat gtgcaagtca caacacttcg      7140
     aataatcagg tttctctgca tcaaaaccga attgtgagta tcgttcatat tcctatgaat      7200
     gtggtaataa ataggaatag tggtattatc actccaatta agggaagttt acgttagatt      7260
     tcgcttttag tgtccattct gaactatcac agcttagata aaaagtgtaa taaaatttat      7320
     tccatttcag gatccctgta tggttaacga ttattcaatt gataatgcgt ttactaagga      7380
     ggatgatgtt cccggcgaaa acaataatag tccgcctgaa ttcatggaaa ttggtgaacc      7440
     aatcattgac ttcagcgacc tgaattctac agataacaaa catcgaatct acgataatga      7500
     tgagaatcct aatatggaag cgccgaaacg cgataacatg gtaattgtac actcagaaac      7560
     acgggtagtc acagaattac taaattttag taatttatga ctacttcatg tctgcctctc      7620
     ttccattctg cagggaattt tattcctatt tgtcaatacg cctgggttga agcatcgcta      7680
     agctgcaacc caggcgaaat gacatttagt gtagaaattc acagcagaat gaaagagagg      7740
     cagatagaaa atagtcatta atgcataaac tttaattctg tgactatttt tatttctgag      7800
     tgtagtttaa tatatttcgt gtgtgctaga ataagggcgt aagaaggatt gtgtatggat      7860
     agtatagaaa gattttattg ttttatttca ggaattcacc tgtacgaccg aattgctcca      7920
     tcctagtttg aaattatcta aagaagaggt aatgttcatt ctcatgagta tattcattcg      7980
     tcataatctg agcaacgtgg ccctctgtga cattcttgag ctaatcaatt tgatcgtagg      8040
     attcaaatca cttcctgtta cgtatacgga gttcagtcat tttttcacga aaaatagtta      8100
     cagtaggcat tatgtatgta agaagtgcga gctttacatt ggcgaaacaa tggggacctg      8160
     tccgaattgt gaaagctcaa gtaacttttt tttcgttacc ttcgattttg tgtcaaatct      8220
     tcgagatatt cttactcgaa attgggatgc cattgtagaa catcaagtaa aatccaaact      8280
     atcacagcac gtaacagatg tactgaatgc aggtgtagct acggctaaag atatcaaaaa      8340
     tgcaattact ttaacgctta acacagatgg agtaaaaata ttcaattcaa acgtgaaaag      8400
     atccctatgg ccgttaatcg tctgtattaa tgatttaccg gcaaacattc gtttccaaag      8460
     aaaaaacata ctgattgcag gtttatggtt acacgacggt gaaccaaatc ttgatgtttt      8520
     cttgaaacct tttagtgaaa tgatacaaca actctactat cacggattaa acttagratc      8580
     agttctgcta gagagggttt acgtaatagc atgttgcgta gatacgaagg ccagatgtaa      8640
     aatccaaaac tttaaacaat ttaatggcta tgaagcctgc agtttttgtc atcaccctgg      8700
     ggatatagct aaaaaacaaa tacgttatag ttacaaaagt catataccaa aacgtaattt      8760
     agtagatacg cttcgggcaa tggcagtcag caactctcgt ggagtagctg ttaatggagt      8820
     taaaggaatt tcgccattaa taagaattcc tgaattcgat gtagtccgta actgtccggt      8880
     cgactacatg catggcatac ttctcggggt gtgccggcaa ttatgtcgca cgtggtttga      8940
     atgtcctact agcccctgtt atattaaaga taaaatctgc agtatagatg acatgttaac      9000
     aacgatagct ccattcgtgg aatcctcaag aaatgcaaga aaaatttcag acagacattc      9060
     atggaaggcc aatgaatggc tacaatggct gctccattat agtccggttt gtctgaagct      9120
     gtatttgcca aaagaatatt atgatcacta ttacttacta gtttcgtcaa tcactttgtt      9180
     gctaggggat gagatatcta cagatgattt taaaatgagc gaaacaatgc ttcaacagtt      9240
     tgttcaacaa tttgagcaac tctacggttt ggatgaaatg acttacaatg tacatcttgt      9300
     ttctcacctg gttgactgct cgagagatta tggacctttg tgggcattct cactatttgt      9360
     ttttgaagat ataaatggtg ttttaaagaa atttgtgaaa ggtccaaggg aaccaattgt      9420
     tcagataaca aacagatgta tcatgtcaca tacaaaaaac aatgctgata ttaatttcat      9480
     gagtccaagt gtgaaagctt tttggaataa gttaggtaga atgccacaaa atcgcaaaga      9540
     aaaaaaggta gttaactttc atttgcataa aagcttcgcc aacaaataca gtgaaaaccg      9600
     catattcgag aaacaaaact catatacgca caacaactac atttttaaac caaaaagtaa      9660
     aaatgaatat ccacatgaga aaaaggaaca taataactgt tatttttcga tacttgaagg      9720
     ttctgaactt ctgtatggcg aaattcactg tatattaaat gacacattag gaacgtactt      9780
     tttttacaaa gctattcaac cagaagagat caccaaacat tattgtaagg ctcagatttt      9840
     agaggaattt tatttagtaa ggctgaatgc gtctctaacg aaacaaataa aaatgcgcgt      9900
     agatggaaac gattacctaa gtaaagtaca atacaagtta catatagatt gaacgcagaa      9960
     tatgaaatgt attccttcat gtataagact ttaaataaaa taataaaaat taccaatctg     10020
     aaaaaaatat acacctcttt gtttacattt ccatagagct atctgactta aaaaagaaac     10080
     gcaacattgc atcagttgat ttgattagtg tttccctatt ttgccataac aaatcttgaa     10140
     aactttcgca ttttgcatag ttttgaatgc tttagatcaa tatgtatatt ttcggtataa     10200
     aaaataaaat acacaaaatg atttaaaatt tgaaaacaat catagaacca cgtacagcga     10260
     aacagggaag cattatgttc ataactagta cacctaccct aattatagat acaaagtttg     10320
     acctacgtga gtcgtattcg aacttatatt ccatgatgga cttatggaac catagtgaaa     10380
     acaagattta ctagttactt tgatgctccc atttctgttc caaaacaata tttcgatgag     10440
     ccgatgatcc cttaaatatc gactcttact tacaggtttg aatgtaataa cagatgggtg     10500
     tttagatgaa aagaaatcgt ttaaaaagtt gttttaaatt gaatcttcca aaagaaaata     10560
     tctgtttaca tcacacgatg atatcgaaac gtaccataac tctaccccgt tttgttacta     10620
     ttactcaaat ggcctccata ttatatttta cagtcaagag gtttgcttta tcgatatagt     10680
     aacacaatat ttgaatattt ttacatattg tcacaatttg gaatacagta ttcaaattat     10740
     tttgtatagt tttatttgtt gtggctcata ctgttagact ctataacaac tatttcagat     10800
     acagtaacaa tataccgtag aagattctta ttgtttggat ttcaaccgga atagtttttt     10860
     tctatgcggg                                                            10870
//
ID   EnSpm-1_AEc repbase;    DNA;    INV; 1752 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1752
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 540-540 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. Chapaev3-type.
XX
FH   Key           Location/Qualifiers
FT   CDS           576..1412
FT                 /product="EnSpm-1_AEc_1p"
FT                 /translation="MATKRRKFTRQGFGYPESAAGQGGEAGPQASSSSDRS
FT                 STVVENLASVESNATRHLSCTIDVNNFCIVCGEFIPQKKKFVFSDALKIKY
FT                 KQLYSIDTSSLDNSYTPKTICSRCRSVLNEINKQVFSKPMIWRSPTNHATD
FT                 CFFCLTNVKGYNRKNKNLISYPQVRSVNFPVPIHTNTNDSKEINEEELEDL
FT                 NDEDLLDGSLECDESQNFSTEESDFEENTADAEKWDQDEVSDLCRDLGLSK
FT                 ESSELLASRLKEKKVFLQEQKFLCIVRENELSENIFQK"
XX
SQ   Sequence 1752 BP; 585 A; 311 C; 367 G; 489 T; 0 other;
     cacaggtcaa catttgatct aaaaggatac tctggaagcg gactggtccc agtaggtttt        60
     ttgggtcgct gattacgatg agcgggttgg ttaagcttca tcacatcagg ttcaaggtca       120
     tttcaaggtc aagtggagag aaaaccttcg aaaaaatcca aaaaaattca tgggtatgtt       180
     tttgaggtcc ccgaatccga atccgtaaat cgtttaaacc cgcgacctat cctagaggtc       240
     atacaaggtc attctaaggt aatttgaagg tcaagcggag agaaaacctt cgaaaaaatc       300
     cgaaaaaatt catgggtatg tttttgaggt ccccgaatcc gaatccataa attgtttaaa       360
     cccgcgacct atcctagagg tcatacaagg tcattctaag gtaatttgaa tataaagcac       420
     aaacaaaatg tattcataca tatctttttt gagtttagct ttcgattcca gaatttaggt       480
     ttggttgcaa ccagggcacc tccccgtggt gacggtgtgc aacggagttg tctcactatc       540
     cggcgaagtc cctgggttac ggcgattatg ccgtcatggc aactaaacgt agaaaattta       600
     cgagacaggg tttcggatac ccagaatcgg cggctggtca gggtggggaa gcgggcccgc       660
     aggcgtcgtc atcaagcgac cgtagctcta cagtggtgga aaacttggcc tctgtagagt       720
     cgaatgctac aagacatttg tcatgtacta ttgacgtgaa caatttttgt attgtttgtg       780
     gggagtttat tccacaaaag aaaaaatttg tattttcaga tgctttgaaa ataaaatata       840
     aacaacttta tagtattgat acaagttcat tggacaactc atatactccc aaaactatat       900
     gttcgagatg ccgtagtgtt cttaatgaaa ttaacaagca ggtattttct aaaccaatga       960
     tatggagatc cccaacaaat catgctaccg actgtttctt ctgtttaaca aacgtgaaag      1020
     gttacaaccg aaagaataaa aatttaattt catatccaca agtcagatct gtgaattttc      1080
     cagttcctat tcacacgaat actaatgata gcaaggaaat aaatgaagag gaactggaag      1140
     atttaaatga tgaagatttg ttagatggat cattggaatg tgatgagagt caaaatttta      1200
     gcacagaaga gtcagatttt gaggaaaata cggcagatgc tgagaaatgg gaccaagatg      1260
     aagtgagtga tctttgcaga gacttaggac tctcgaaaga gagctcagaa cttttagcat      1320
     ccagactaaa agaaaaaaaa gtctttctac aggaacaaaa atttctttgt atcgttcgag      1380
     agaacgaact ttccgaaaat atttttcaaa aatgaaaaat ttagtttatt gccataatat      1440
     tgaagagtta gtgaaagaat acgatataga atatacacca agcgattggc gactttttat      1500
     agattcgtca aaaagaagtt tgaaagcaat cttgctacat aatggaaata tttatgcccc      1560
     tctgccagtt gctcattcag ttgtcttaaa tgaagaatac cataatttag aattgttgtt      1620
     acaaaaattg aagtacgaag aaaatgagtg gtataagctt aaccaacccg cccatcgtaa      1680
     tcagcgaccc aaaaaaccta ctgggaccag tccgcttcca gagtatcctt ttagatcaaa      1740
     tgttgacctg tg                                                          1752
//
ID   EnSpm-1_AP  repbase;    DNA;    INV; 2614 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   EnSpm-type family from Acyrthosiphon pisum- consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_AP.
XX
NM   EnSpm-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2614
RA   Bao W. and Jurka J.;
RT   "EnSpm-type families from Acyrthosiphon pisum.";
RL   Repbase Reports 9(2), 465-465 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This element is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           131..2011
FT                 /product="EnSpm-1_AP_1p"
FT                 /translation="NLSDSSFGYSDRSPDGSLPDHESSQXLLNLGNDDXNN
FT                 ILAEPSFREKLQNWAVKHRSNLTVEMIEDLLGILRAENIPDLPKSATTLLQ
FT                 TKSNTNIKSMNSLKNTTGFYMYLGIEQGLKXIITDEYSENXIRLLFNIDGL
FT                 PLFNGSNQQFWPILGLILHNDYXSQPFIVAVYSGDSKPQNIDXYLEDYVKE
FT                 AKXLIQNGVTIGQRTFRVEIVGFSCDTPARSFIKKCKGHGGFXACERCETR
FT                 GKTINKKRVYPSMTSXLRTKSSFIMKSQNEHHLGAGRSPLLDIPDFDPVKS
FT                 IFLDSMHLLYLGVMKWIMQQLLGTKKVNRKCKLPVQDVNYLNLKLKIFVKY
FT                 XIPKEFQRKKFDLEDFSHWKATQFRFFLHYCGSLVLHNILPKXMYKHFLLL
FT                 VVACRILCDPELCIDNVGYARQLLRKFFELLPSFYGSDSQVMNXHNLIHLA
FT                 DDVEXTKMHLSAISAFPFENYLGKIKRLIGGGSNPLAQLARRXSEQKACPE
FT                 MVKKSAIKKKKFLIINSDMHEDEVNLEDIIFRGVTLSIKKPDNIVKMDSGH
FT                 IXQITRIRKXQHSXFLHGYIFKXVTDVFXYPCXSXKXGIMKLGRLSETEKK
FT                 FSXDNXLKKCVFFENXXXSXAXTXLHDS*"
XX
SQ   Sequence 2614 BP; 965 A; 314 C; 387 G; 861 T; 87 other;
     tratttacat atggaaattg atgtctctag caatttacca acttatactc agtctataga        60
     tattagtgaa catcctgata ttcatgaaca tgataattct agttcaaatt attttgacaa       120
     tarttcttaa aatctatcag attcatcttt tgggtattca gacagatcac cagatggtag       180
     tttaccagat catgaatctt ctcaaraatt actaaatctt ggtaatgatg atcasaataa       240
     cattttrgca gaacccagtt ttcgtgaaaa attacaaaac tgggctgtaa aacatagaag       300
     caatctgack gttgaaatga tagaagactt attaggaata ttaagggcag aaaatattcc       360
     tgatttacca aaatctgcaa ctaccttatt acaaactaag tcaaatacaa atataaaatc       420
     aatgaatagc ttaaaaaata ctactggatt ttatatgtat cttggtatag aacaaggttt       480
     gaaagasata attactgatg aatattctga aaatwktatt cgcttgttat ttaatattga       540
     tggtttacca ttgtttaatg gttctaacca acaattttgg cctatwttag gacttatttt       600
     gcataatgat tatgawtcac aaccatttat tgtkgctgta tatagtggtg attctaaacc       660
     acaaaatata gatrattatt tagaagatta tgtcaaggaa gcaaaawktt taattcaaaa       720
     tggygtaact attggtcaaa gaacatttag agtagaaatt gttgggtttt cytgtgacac       780
     gccagccaga tcattyatwa araaatgtaa agggcatggt gggttytwtg catgtgagcg       840
     ctgygaaacc agaggcaaga caataaataa aaaaagagta tatcctagta tgacgtccam       900
     gctacgtaca aaaagtagtt ttataatgaa aagtcaaaat gagcatcatt taggagcagg       960
     tagatcacca ttattagata taccagactt tgatcctgtt aaatcaattt tcttagattc      1020
     tatgcattta ttatacctag gagttatgaa atggataatg carcaattac ttggtactaa      1080
     aaaagttaat cgwaaatgta agctacctgt acaggatgtt aattatttaa atttaaaatt      1140
     aaagatattt gtgaaataym atataccaaa agagtttcar agaaaaaaat ttgatcttga      1200
     rgatttttca cattggaaag ccacacaatt tcgttttttt ttacattact gtgggtcttt      1260
     ggtgctacat aatattctac ctaaaraaat gtataaacat tttttacttt tagtkgtggc      1320
     ttgtcgaata ctrtgtgatc ctgaattatg tattgataat gtkggttatg cwagacaatt      1380
     attgaggaaa ttctttgagc tacttccatc attttatggt tcrgattcac aagtaatgaa      1440
     takacacaac ttaatccact tagctgatga tgttgagyat accaagatgc atctgtctgc      1500
     aatatctgcg tttccatttg aaaactatct tggtaaaatt aaacggttaa ttggaggagg      1560
     aagtaatcct ctggcacagt tagccagaag awtatcagaa caraaagcat gtccagaaat      1620
     ggtaaaaaaa agtgctataa aaaaaaaaaa gtttctcata attaactctg acatgcatga      1680
     agacgaagtt aatttagaag acattatttt tcgyggagtt acattaagta ttaaaaaacc      1740
     tgataatatt gtaaaaatgg attctggcca tattwttcaa attacgagaa tcagaaaara      1800
     gcaacatagt rtktttttac atggatatat attcaagrrt gttactgatg tttttmaata      1860
     tccwtgyama tcawcaaaar ttggaataat gaaaytgggw mgattrtcag aaacagaaaa      1920
     aaaattttca wtagataatr ttttaaaaaa atgtgttttt tttgagaatg rcwgtaakag      1980
     ttwtgcartt acwtwwctwc atgattcata aaataaaaaa taattttaac tataawtata      2040
     acatattatt ratattttaa tttttaaaca atttttagta taattaaata attattatat      2100
     aatatatgat atttaatttt aattcaacat atattttata trtgaytgtt ttttttatat      2160
     aggtaaccaa satggacttr craaaaaata ctacncatgt tgttatcaaa ttycangaaa      2220
     aaaaaaaaca cggaatgcaa agyattgatg ttataccaat ttcatggrtg tattgtaaaa      2280
     aaggaaaatt gtactgtaaa tatccatmtg aaaawgaata caatagatta gatgaaatga      2340
     gtaaracatc agtactacct gaagcccttt ggagaargtt tgaaataact ttaatyaaag      2400
     aagctagtac gtaccatata catcattaaa ataacttwat aytttcaatt taatatgtgt      2460
     taattaagta tcaattttta taaagttttt tttttacatt aaagaaaatt atgatcaagg      2520
     attaagacgt atgaataggg catgctctga tactataatt attagcagta atttagaaga      2580
     gcaaaatagt ccgaagaaga aataggtcct cttc                                  2614
//
ID   EnSpm-1_BTa repbase;    DNA;    INV; 11296 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-11296
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 519-519 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus. Termini are consensus. Mutiple insertions
CC   are removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(760..2979,2983..3231)
FT                 /product="EnSpm-1_BTa_1p"
FT                 /note="Tpase."
FT                 /translation="MDGRKRRRMVPLADASRATRYRRAAETLASWDGEPDS
FT                 VRGEIRNENEPNSEEISSPGSSTSHVSSEVPHLSVSGVSNFDKNISFEGHS
FT                 DVDSRGAVLNSAASADGDDNNDDSSDSETNSLLGNDSDSDLDQVSVSSDSD
FT                 EEVSGNIEGDSLTSKLRFWSVNRKISQLALSELLKILKGCDPAECKSLPLD
FT                 ARTLKQTPFTNKAVPVKTFDSGGEYYHEGLLKGIHHTLASRTGISFEELCI
FT                 LIGMDGLPLFKASKEEFWAILAKIVSVPGLARTVFPVGIYSGKHKPLELDA
FT                 FLHDLIEEINTLTKDGVQWKGKTYKFVLKGFACDCPAKSYILCIAGHTGYW
FT                 SCTKCKQKGKHSSSYNRVYFPEVNSAPRIPMRILSKGKMKTFITRKHVPLL
FT                 RVSNIDFQNHYPLDYLHLLCVGVCKTLLILRTKTKKNPFRLPANIISQVSG
FT                 RLLLFEKHIPSDFVRKTRALEDVKRWKATEFRLFMCYIFPFVFHDIFNEPR
FT                 QRNILLLFAACRILLNPVLCKEYKDTASALLIKFNESCKAVYGEDILTHNF
FT                 HNTIHLPDNLNSFQNLEECSTFDFESYLQILKNYILKGGKYLQQAIKRIEE
FT                 VRSCPSSNDKKQDSSPKCSIGHKNGPLPDGCCDPQFRQVQFPTFKLSSLVR
FT                 DSCCTTIDGSVALVRNVCFSRSHNCQVFVVRKFLSKSDVFQYPCRSSNFDV
FT                 FYVEELSDLSIIRFSEVKFKNCMLPFKTGYVVLPLLHTLAIRNPNPRLKVY
FT                 SIIFFSFTKLFQISHVQFCCQAKCFYGSWCFLGNFKTTLCDTHKNKRKNKK
FT                 AEGFLYHFYFSQPSSFFYLLN"
XX
SQ   Sequence 11296 BP; 3416 A; 2128 C; 1987 G; 3761 T; 4 other;
     cccagttagc attttatctt cggagaatat ccctgaaaaa tcccgcgcct ccgcatcatt        60
     taaaaatatt atgacaatat cctcacaaaa accaaacaaa ataaatattg tgaggatatt       120
     ttgaaaatgt tatgaaaacg tgcaagttta taatcttctc agaacattct cagaatatcc       180
     cgtctgccgt tgcacgggtt acataatcgc ccatttgaag gcgctacaaa aacccgctct       240
     ctatcggctc tcaccagtgt atataacctc aaactgccgg cgctggcaca tggagtcgtc       300
     ggtccccgtt acagtgatgt gattttttac ttcaccaaac agtttcttga ttctttcacg       360
     actcacgacg aaacactagg taagttaaaa tcctttacat tcattttgac tgcagattaa       420
     ctttcctgat cgacaggtag ctggataata tgtttggctg aaacctattc catacagaca       480
     caaagctgta catatttcag actctttgaa tcctcgaaat atgacctgaa tggtagattt       540
     tccatttcac tctatcaatg tgtgaactca ggacagaact ctgtctttga gctaggcagg       600
     agcttcactt tccatctcta gcatgcggtt tgatttgtca tgaaacctga ccgttgcccc       660
     gtgagtgaaa acgattttat cagaataggg taaggtgttt ttgagaagaa atgattcctt       720
     catttatttt tttaatgctt ccaatccttt ctaggcccaa tggatggtag aaaacgtcgt       780
     cgaatggttc ctctcgcaga tgcatcacgg gcaacaagat ataggagagc tgcggaaacc       840
     cttgcctcct gggatgggga gcctgactca gtgagaggag aaattaggaa tgaaaatgag       900
     ccaaattctg aggagatctc gtctccaggt tccagcacaa gccatgtctc ttcggaggtt       960
     ccccatttaa gtgtctcagg tgtttccaat tttgataaaa atattagctt tgaaggacat      1020
     agtgatgtcg atagtagagg agctgtcttg aattcagctg catctgcaga tggtgacgat      1080
     aataatgatg attctagtga ttctgaaact aatagtctgc tcggaaatga tagtgacagt      1140
     gatttggatc aagtatcagt ttcatccgat tcggacgaag aagtttcagg caatattgaa      1200
     ggtgatagtc ttacatctaa attaaggttt tggtcagtca atagaaaaat ttcccagctt      1260
     gcgctctctg agctattgaa aattctgaaa ggttgtgacc ctgcagaatg taaatcattg      1320
     ccactagatg ctcggacttt gaaacaaact cccttcacta ataaagcagt tccggttaag      1380
     acttttgaca gcggaggtga atactatcat gaaggattac taaaaggaat tcatcacact      1440
     ctagcttctc gtacaggtat atcgttcgaa gaattgtgca ttttaatcgg catggatggt      1500
     ttgcctcttt tcaaggcctc gaaagaggag ttctgggcaa ttctagccaa aattgtttct      1560
     gtcccaggcc ttgctcgcac tgtttttcct gttggaattt acagtgggaa acataaaccc      1620
     ttagagttag atgctttcct ccacgacctt atcgaggaaa tcaatacact gactaaggat      1680
     ggtgttcagt ggaaaggaaa aacctacaag tttgttttaa aaggttttgc gtgtgattgt      1740
     ccagccaaat cgtatatact gtgcatagca ggacacactg gctactggtc atgtaccaag      1800
     tgtaaacaga aaggaaagca ttcctcgtcg tacaacagag tttatttccc cgaagtaaat      1860
     agtgctccca ggatacccat gaggattttg tccaaaggaa agatgaaaac tttcataacg      1920
     aggaaacacg tacctctcct tcgcgtgtct aacatagatt tccaaaatca ttacccgttg      1980
     gactatcttc atctgttatg cgtcggtgtt tgcaaaactc ttcttattct tcgcacaaag      2040
     acaaaaaaaa atccatttcg tttgcctgca aatattatat ctcaagtttc aggtagactg      2100
     ctcttgttcg aaaagcatat tccttctgat tttgtgcgta aaactagagc gcttgaggat      2160
     gtaaaacgtt ggaaagcaac ggaatttcgc cttttcatgt gttatatttt tccttttgtt      2220
     tttcatgata ttttcaatga acctcgtcag cgaaatattc ttctgttgtt tgctgcctgc      2280
     agaattttac tgaatcctgt actatgtaag gagtacaaag ataccgcgtc tgctcttctc      2340
     attaaattca atgaaagttg taaagcagtc tatggagagg atatcttaac gcacaatttt      2400
     cacaacacca ttcatcttcc cgataatctc aactccttcc aaaatcttga agaatgtagt      2460
     actttcgact tcgagtcata cctgcagatc cttaaaaatt atatacttaa gggtggtaaa      2520
     tatctgcagc aagctataaa acgcattgaa gaagttagat cttgcccatc gtccaacgac      2580
     aagaaacaag attcttctcc aaagtgtagc attggacata aaaatgggcc attgcctgat      2640
     ggatgttgtg acccacaatt ccgccaagta cagtttccca ctttcaaact ctcttctttg      2700
     gtcagagata gctgctgcac aactattgat ggcagtgttg ctttagtccg aaatgtttgc      2760
     ttttctcgat ctcacaactg tcaagttttt gttgtccgaa aatttctttc aaaatctgat      2820
     gtttttcagt acccttgtcg tagctccaat tttgatgttt tctatgtgga ggaattgtcc      2880
     gatctctcaa ttattcgttt cagtgaggta aaattcaaaa attgtatgtt gcctttcaaa      2940
     acaggctatg ttgttttgcc tttgttgcac actttagcgt aaattaggaa tcctaatcca      3000
     agactgaagg tttattctat aatttttttt agtttcacta agctcttcca aatttctcat      3060
     gtgcagtttt gttgtcaggc aaaatgtttc tatggatctt ggtgtttcct tggaaatttt      3120
     aaaaccacct tgtgcgacac gcataaaaat aaaagaaaaa ataaaaaggc tgaaggtttc      3180
     ctttatcact tttatttttc acaaccctca tctttctttt atctgttaaa ctgacccata      3240
     gcgtcttttt gggggaggag tgtctttttt gtaaggattt ataatgaatt gaagatcttc      3300
     aaacatttac tactctcaag ttttagatga tttaatgata ttttttcggc atttgaaatg      3360
     aggagctatc cactcttttc cttttacttc cagggaaatg tggtgtgttg ttaccttcat      3420
     tgatgaggac gactcagttg gcatcatctg tcagtcatgg ctccaaaatc ccattgatga      3480
     tgggagagtg cccttggaac gcctcaaaaa tgtatcgtgc atgtaccccg ttcgcattga      3540
     caggaatgca ttcaaaaaat tactgctaca gcaaggagct tcaatgtcag gttgggagcc      3600
     acaaaggata aacattctca aatataatat cggtaatgtg ctttttagtt tgattttcag      3660
     taatgtattg aatgtttcat ttctactaaa ttaagtgtct ttttgaaacg taaaatgtag      3720
     ataccagaaa aatcgcatat cagaaacttt cctgtaattt taaccaagga ttctgatttt      3780
     aatttctttt cactctcatt aactctgctt ttcactcaaa atgaaataag aattattatt      3840
     aactaattgt ctgtaaccca accagttgtt ccaagtgttc agttccaacc aatctccaaa      3900
     aatactttta ctctcatcaa aaacatatct gctgatgcaa tcattcatga aaatagtgga      3960
     gaacagtact taaatgcaat ttaactctct ccaaggcttc gagaacgaaa tttctaggaa      4020
     acctgttcac tgtcattttc tgaggaataa ccatctctgt ttgcagtagt tcttcatctc      4080
     ctcatgagca tgttcatcaa tcttgatgat tccattgtat attctaggtt ccttaacaga      4140
     agctgtcaaa acgcgcagaa aagcagcaga tacatcaaat ttggacacta ctgattcaga      4200
     agacctcgga cgggctaaga ggaaacgtct acctaattaa aagtatgcgt ctagttcctc      4260
     cgacgctaag caaccttcta aaacaggccg cgtagggcca gccaaaaatt ttgactcagt      4320
     tcctttccca gtaagtagca caagtacgcc gcggaaaata cattctcccc tacctcaatc      4380
     aactcaaaaa gttaatccta aaaacacggc tacttctgca aaactgacat ccattcaagg      4440
     taataataga agcttatttt tctcaatctc tttcagtata ttttgggtac agaaaggagt      4500
     caaagcctga aaatcagtgc tcagtaatac accattactc tcataacacc atccattaaa      4560
     gttattgctg catgatttgt aaagtaagga actgaatcga gaggtttgag tattcttgaa      4620
     atttcaacct tacttttgca cttaaagcca ccaattgcta caaagtagga aggcgtcagg      4680
     aatttttcat gttaaatttt actttcctcc ttgaatgaga aatccaagat tttttctcgt      4740
     aagttgcaag ttttaattgt taatcttgag tatcttgtat tgaaaagcat acaagcagaa      4800
     tctgtctctg attcttacat cctcttatga ttcttttgca acaggcaaag ttgatgctct      4860
     ccctaatgtt gctgatgtgc atagaaaaat aattgctgct tccgttgcag ctccaagaca      4920
     taatcctaac aacacggcta cctctgtata actgacttct acaggaggta ataatagagg      4980
     cgcatttttt tctatcactt tcagtatatt ttaagtacag aaaaaagtta aatttgcctg      5040
     aaaaccagta ctcacatatt caccttcaca ctcatacaac catccattta agttattgcc      5100
     gcttgatttg taaagtcagg aactgaatta agaagtttga atattcttga aacttcaacc      5160
     tttcttttgt acttaaagcc acccattgct acaaagcatt gtattaaaga gcatacaagc      5220
     agaatctgtc tctgtttctt acaccctctt atgattcttt tgcaacaggc agagttgatg      5280
     ttctccctaa tgttgctgat gtgcatagaa gaagagttgc cgcttctgtt gcagctccaa      5340
     gagataatcc taacaacacg gctacctcta caaaactaac ctctatagaa ggtaatatta      5400
     gaagcgcatt tttctctatc tctttcagta tattttgggt acagaaaaaa cttaaatttg      5460
     cctgaaaact tgtgttcacc aatgcaccac tactctcata acaccatcca ttaaggttat      5520
     tgctgcatga tttgtaaagt caggaactga atcaagaaat ttgagtattt gcataggtca      5580
     tatattttca tttggtcaac tataatcaac taagaacatt tagtaaatgt caccattgtg      5640
     atcgattggc acagaaaaat ggtactgcat ttccaaatag aggaaaagct ttgtaacggt      5700
     aacaaaactt tgaagtcagt cctctactat gaacagggaa gccagcataa aaaaagtcat      5760
     attattttgt cagctttcaa agaaggacga aaattgtatt ttttgggtaa gtgttcttgc      5820
     tgagcatgaa gctgaaatat cttcgctgat ggcggtagct tgcctcataa ttaaagctct      5880
     gtgttttatt tatcaaagat aactaacgaa ctttggttga aatccaatat tcctccattt      5940
     ggcagtggaa tgttattaca attctttttt agactgttcc acctctaaac tgtgcgagtc      6000
     tacttttttg attgtttttt cgaaaaagtt gattttaatt agaaatcttt gtttacgaag      6060
     cattgctctc gtagtcttag tttgggattt taagacggtc ctctaaacct cagcatgagt      6120
     tccgaatgtg cattgaaatc atttaagtcc agcaatttca aggagatgtt cagtcaagaa      6180
     aatgataagc agcatcccgc aaatttcaac ctttcttatg tacttaaatc tttcaatttc      6240
     tacgagtcag gaaagcgtta ggaattttta atgttaaacc ttacttgtca tcctgtatga      6300
     aagatacagg attttttccc gtaagttgca agttttacgt cactcttgaa tatcttgtct      6360
     tatattgaag agcatacgtt cagaatctat ctctgtttat tatattctct tgcgtttgtt      6420
     taacaacagg caaaatcgat gctctctcta atgtagctgc tgtgaacaga aaaataattg      6480
     ctgcctccgt cacagcactt gaaggaatat caagcgatat gaaagagctg tcagatctgc      6540
     taaggaactt catagtgcta gaggtgggga aaaggaatga cttagttgtc tcaaaattgc      6600
     ctctcacgac acacgaaaat ttagttgcat tcgaagcaga tctagatgga gcaacttttc      6660
     gccttgatgc agtaagtctt catgagaaat tcttcccttc ctatttgatt taaggcataa      6720
     aagacctccg cactaagtac cttctgcccg aagtatcgta agtatgttgt cccaaaaata      6780
     atgcaacccg tgcagcctca aagaataact cttctgcttt acaaaaagct ttattgaggc      6840
     ttgtttgagt ttaaagaaaa attatctttt tctgttttaa aaactattta gtggagaaca      6900
     ccctcgctaa gaaccgtttt aacttctgca gaggttccgg ttttgtccat taatttgctc      6960
     ctgtgagaat cagtggtatc actctcgaga caacctgcgt aaattacata tatgtaacaa      7020
     ctctatattt ttctgccatc caatactcaa caactaacat tttatgtact ctctaatgtt      7080
     caagtgtgag ctgtgatttt tcatgtttat gttgcaggtg aactggttgt ccttaaagat      7140
     caagcagact ttaagtgaat cagttcttaa catacttaaa ggaatgttta ccgatgaact      7200
     tgtttttcga tattcaatgc agggcttcaa aaggaagaca cggttggatt tatataaaaa      7260
     catcttggat gtaattaaac gtaagttctc attcaaaacc ctacgcaatt aattgaatca      7320
     tagagccagt tttgcagtaa atccactgtt attgagcctt cctctgacat ctagccagaa      7380
     gggtagggct aggccccacc gttgggtgat acagtgaact cctataaaat tgactttgta      7440
     aagtgggctc tgagaatttt tttttggaga taattcaaac aattcagcac attgagagta      7500
     ttttatttga tgccattttt gcacttatcg tgggaagcaa agtaacttct tgccttgatc      7560
     gaaatgtttg aaactctcac tttttttatg taacataaca ggggaataat tgattgccta      7620
     aagtaatatt cattcttctt aatttattgt tcactcaaga gaataatact caagggatac      7680
     caatggatgt gtgtaaaacg gttaaagcaa ctttttggta aagattgtag aagtacctca      7740
     gcccacaata caattaattg gattccactt tttgggtagt gctaagaaaa agggaaatct      7800
     gttcagcaac tgttcttttt tgtctgttct tagatttcaa atgtaaattg tttctgtttc      7860
     agttgctgta cgctcaaaat atcccactgt cactgatgat gacatcttca aaccacttaa      7920
     gagttggttt gcacatgcga aacaacggct taaagactct ggccgatggt gagtgaaaat      7980
     atttcttggt atctatcttt ccatcttgat acctatggtt tcttttgaat tgtgactaaa      8040
     cttgtatttc aaactgtcga atcagaatat tattatctta ttatagtcat gtaaaaagtc      8100
     agttcatgcc cctcaagggg tacgtaaggc ttcagtgggc tttttccacc atttttctgc      8160
     aaatatattg agagaaaact tagtcgttgt agagtaaata atgtagggat ctaaaggcct      8220
     agggcataag aaaatgttga atctcgtttc ctcaattctt tatcttttta cttcagggac      8280
     cctcagctcg aaagtgaact gtatagtggc cctcaagacg acactgaaga ggactgtgac      8340
     actcaagaca acattgaaaa tgttcaagac aacattgaaa atgttcaaga caacattgaa      8400
     aatgttcaag acaacattga aaatgttcaa gacaacattg aaaatcttca agactacttt      8460
     gtaacccccg ttatggacaa cactgaacgc aatgatggca acaacgtcaa tcccaaccgc      8520
     aataatttgc aaaatagtca agatctcctc agctatgatc tcgattactc cctgatcaat      8580
     gatctcgatg atgatagtga aacgtatttt ccaggttttg ctaactaagt gtagcttctt      8640
     aattctcagg taataagtta agaattttga ttttggatat cctttatata agaaactaca      8700
     ttttttctca tttaattact gccgcgccgc ttagtagtgg tcaggttcgg taaagcaagt      8760
     ctgattttct taagtagctg ttctcataaa gcgcctatga aaggaaaagg gtgaatttat      8820
     ttaaaaattt actcattttt attctttgtg aaatttaagt caattgtagc ttgtttctga      8880
     ttacctcgtt cgttacaaag cattcacaaa tgatttgtac ttatatcgaa tctcgaaatt      8940
     atgagctaaa aattgctgcg ccttagaatt gccaaagcat caaactgtta ttacagtaag      9000
     cggtgccgtt tgtatttttt gtcaatgtaa cagacttatt ttttctcctc ttttttattt      9060
     ttttggttat ctttgtttat gttttttata tttttctacg gctctttagt caaattctaa      9120
     aactgtgcta ttctattatt tagtcgtatt gcgttaactt ttatagttgt ttactaagta      9180
     attcgtgggg ctgaattggg aataaatgaa aaatgttcat taagacagga ttttccctat      9240
     aagttgacat ctcaacggaa aaccggattc ttggaatggc cgaagagagg gaagcttttc      9300
     aatacatgta aatagagtta tacttagtca atttggcagc tgatctcagg aacaaccctt      9360
     gctttaacac atcacgcacc atttctgcta aacataaatt tttttttgga aagctctttt      9420
     aaaggaattc ttgatttctg gaaacttctg aaatgatgga atttcctggt catattctct      9480
     gaattcacca ctaaagaata cctctaaaaa aacttcgcag aaaatgacag gatcaaacaa      9540
     ttttaaaggt tgcaaactaa tcattccgtc cattttcaaa tccatgattt tcaaaactaa      9600
     aggtaaggca gtccattgca tctgttaagt tttatttcat attgaaacca tcaaaatgtt      9660
     ttcttacagc ctctcgtaaa tgtttttccg ctattttgtt ctcattttcc ttttcggttt      9720
     gaatttattc atagctggtc gtccaaaatt tccaaagccc ccgtgcaact ctcacgtttg      9780
     atgatattat ataagctatt agcatcttgt agacaactgc tatctctcgt tttttgactt      9840
     aaacagtaat tttttaggca agcaatcttt cgtaaattga accaaatgtt tacctgttag      9900
     tttaaaagtt gtttaccaaa tgttaataca ttttgtttgt aaggaacaaa atttatttat      9960
     ttttaagagt tcaaagtttt ttaggactgt ttgattagct attagtattt acttatttat     10020
     tttgttcaac aacctattag tatttatttt ttttatttct ttcctctgtt taatactaca     10080
     tgttgacttc tgaaaatgaa taaaacatct tttgttcctg aaattttgct ttcaacatat     10140
     gttcttccaa ctgtactttt tatttccatg gagataagta ccaatgcgta tcgtgtgtaa     10200
     taaaggattc gtacaaattt tctcctttaa cagctaaaac catgttcttt tcaagaaaac     10260
     tcggttgaca gcagttcagt ctgccattac gcttgtaatg ttcttttaaa tgtctgtgaa     10320
     aaagttttat ggctaatttt tcatgaataa aacgagtaag aaggtgtgaa aaattgcatt     10380
     gcaatgcaat gcaacatgca agaatcgcaa cattttgagg ggaaaaaaag ttaattgttc     10440
     agtgaaactt gaaacatctc aatgcaatcg aacggaaaca cctgttactt atccatccca     10500
     tagtttctga ccacacttat gttttttctg ctttcctcaa ggacaacaag aaaacataaa     10560
     acttctcctt ccagtagtga atgaaatgag cccttaatta actgacttga ggatgttgaa     10620
     agaaaatgta ttatgaacca tccaacgttt ccagcttgtg caaaactttt ttctactttt     10680
     cctgacgaca gcacttaaaa cataaacgta tgaacaaaaa tcagctgatt ttttaattat     10740
     tcatgagtag gtaggtgaaa aaactaaaat caattgatct gtttaagtgt ttaaatcaga     10800
     acaaatcaat tgttttcagt tttttcctaa tgttgtaagt actgtcctca agaaaagtag     10860
     aaaagatatt tgcacaagct ggaaaggttg gatggtccat ggcaaatttt ctttcaacgt     10920
     cctcaakgga gttaattctg ggctcatttc atccactgct ggaaagggag ggaggactat     10980
     aataacactt ttatgacaat gtccacacga tatccwgtga atattctgcg gattttacga     11040
     atatcctgag gtcatcctga caatatkctg tggacttttc aagcattttt ttcaaatatc     11100
     cctagaatgt ccacacaata ttttggggat tttcaaatat ccccagaata ttctggggat     11160
     ttcgttttgt ctcacgaaaa tgttctgaga atgttktgag aatattccgg aatattctcg     11220
     caacattgtc agaatatttt gaatttgcct cgaaatatta tcagaacgtt cacagaatat     11280
     taggctgcta actggg                                                     11296
//
ID   EnSpm-1_DF  repbase;    DNA;    INV; 3207 BP.
XX
AC   .
XX
DT   08-JAN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3207
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 763-763 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. Chapaev3 family.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(834..1439,1580..2488)
FT                 /product="EnSpm-1_DF_1p"
FT                 /translation="MASFRVYPCKTNPDRFCYVCAKYIFGGPGRSITVDVQ
FT                 NDYRECFGIPMQNQDKCWVPHKICATCRSGLTKLKSGSLQALPFAIPAVWR
FT                 EPFNHDSECYFCVINTKLVSKKSIVYPEVASLAKPVRSALPSKFEDRVFSR
FT                 PLTTSITSMSSQESHAYEDSDAVKLFTQDEVDDLIKKLHLTIENSEYQASV
FT                 LKCHNVCEKGTSRRGTIHGIHQIHEKSEWRLFIDGSVESLKAVLVHNGNXK
FT                 PSVPIAYAYKMKETYASLSGILSLIRYDSYKWRVCADLKVVAILTGLQGGY
FT                 TKYCCFLCLWDSRNRVEHYTKKIWPKRVDKMPGTQNVSFRSLVDNENIILP
FT                 PLHIKLGLMKQFVKALDEDSLAFQYLKSKFPSLSNAKIKEGVFAGPRIRKL
FT                 FHDEQFQKCLNSVEVRAWNCFKNVVEGFLGSYRSPNYENLVKELLRSYEAI
FT                 GATMSLKLNFLHSHLDFFPANLGDTSDEQRERFHQDIKVVEARYKRKCAGH
FT                 MMGEYTWFL"
XX
SQ   Sequence 3207 BP; 999 A; 599 C; 616 G; 990 T; 3 other;
     cgcattttta gcatttttat tcacctttga aattttgtaa cggtaccgtg gggcgagaaa        60
     tgtaaaaaaa ttcctttttg gtgtcgtaga gaattctatt acgaacatcc ccatatatct       120
     cactacgtat anttattcaa ttttaacgtt cgtttttgca taaaggcgaa aaattgcgtt       180
     attgtttcat ttatcaaccg aaacagttag cggtttgttg tagattaagt taaagtattg       240
     caccttcaaa attattttac ctgcgttttc gaggttgctg aacaagcctc cgtcgtcaga       300
     attttcattc gaccaaagaa attcaatgca gctgcagttt taagaaaaaa ctagcgaaaa       360
     tcaggtaaca caaagtactt tcttgcctaa ttttgtatca ggaaaattag ttggttcgtt       420
     atagagtatt atatttcagt gcaaatatgt aaaactgtcg tgtttgttat gacagttcca       480
     catactctgt gattactcta aacaggaaga tttgaaaagt ttcaaaatgc tgccgcgctt       540
     gtatcacgtg taagttgaca cagtcacccg gcggcaaaat taattaatat aataattaca       600
     tatttggtca tatagtcgta agacccgacc ccaatggact tgggtagcag taaggcgagt       660
     tttagagata ggaacatttc ggtactttgt tttcgtttag agatcaagct ttagagataa       720
     gaacatttct gaactctggt tttggtagtt gagctagcat tagagataag aacattttct       780
     gtacttagtc agtcaatttt tggagatcat acgcgccggt catcgctagc taaatggcat       840
     cgtttagagt gtatccgtgt aagaccaatc cggatcggtt ttgctacgtt tgcgcaaaat       900
     acattttcgg tggaccagga aggagtataa ctgttgacgt tcaaaatgac tacagagagt       960
     gtttcggtat tccaatgcag aatcaggaca aatgttgggt gccacataaa atatgtgcca      1020
     catgccgatc tggcctaacg aagctcaaaa gtggaagtct tcaggcattg ccttttgcga      1080
     ttccagctgt ttggcgtgaa ccattcaatc atgacagcga atgttatttt tgcgtcataa      1140
     acactaagct tgtgtcaaaa aagtcaattg tttacccaga agttgcctct ctcgcaaaac      1200
     ccgtccggtc agccttgccc tctaaatttg aagatagagt atttagccga cctttaacca      1260
     catcaataac atcaatgtca tctcaagaat cacatgcgta cgaagattct gatgctgtga      1320
     agttgttcac gcaggatgag gttgacgatc tcatcaagaa actacacttg accatcgaga      1380
     attcagagta tcaggcttcc gtattgaaat gccataatgt ttgcgaaaaa ggtacttctt      1440
     aaaagtttac aactgattgt gacagtatat atatgtaaca aaaatttcat tcaaggtttt      1500
     aagtcgtcaa tctatcgacc cgaaatcggc aactcgcaac atattttaag gaggaaaatg      1560
     ccatcacata ttgccatgac gtcgagggac tattcacgga attcaccaaa ttcacgaaaa      1620
     aagcgaatgg cgacttttta ttgatggttc tgttgaaagc ttaaaagcag ttttggtgca      1680
     caatggaaat anaaagcctt cggtcccaat cgcatacgcg tacaaaatga aggaaacgta      1740
     cgcatcacta tcaggcatct tatcattgat tcggtacgat agttacaaat ggagagtttg      1800
     tgctgacttg aaggttgtcg caattttgac aggcctgcaa ggtggctata ccaagtattg      1860
     ctgctttctt tgcctatggg atagtcgtaa tcgggtcgaa cactatacca aaaaaatttg      1920
     gcccaaacga gttgacaaaa tgcctggtac acaaaacgtt tcctttcggt cactggtcga      1980
     caacgaaaat attattttgc caccattgca tattaaactt ggtttaatga agcaattcgt      2040
     caaagcctta gatgaagatt cactagcntt tcaatacctg aaatcgaaat ttccatcttt      2100
     gtcgaacgct aagattaaag aaggcgtgtt cgctggccca cgaatccgca agttgttcca      2160
     tgatgaacaa tttcagaaat gtttgaactc tgtagaggtc agagcatgga attgcttcaa      2220
     aaacgtagtt gaaggctttc ttgggtctta tcgttcccca aactacgaaa acttggtgaa      2280
     agaattgctt cgaagctatg aagcgattgg agcaacaatg tctttaaaac ttaatttcct      2340
     gcattcccat cttgatttct tcccggcaaa tcttggtgat acgtctgatg aacaacgtga      2400
     acgatttcat caagatataa aagttgtcga ggccagatac aaaagaaagt gtgctggtca      2460
     tatgatgggc gaatatactt ggttcttata actatcaaaa gtaaagacag gggaaaaagg      2520
     aagtcaagtc agcagttttg aagattaaag taggtgtcgg gtcatccagc cgcagcagat      2580
     aattagtttc tcttaatgcg agcgcttatc ttctcagtat agcttccatc gctctctctc      2640
     tacctttttc tatcgctctc tcgttgcttg atatcttcta ctttgggtca gaaatcggct      2700
     gatccacttc tcacttgtaa ttccaactct ttctttcgat ctcgcggacc atttgttaat      2760
     ctattctgct aaaataaaat agctgccttt gcagaactca aacttaaatt ttcgtcgttt      2820
     aaattcaaca gctaataaaa aagcttatta gctcaacagt aggataaagt gtaaaaatat      2880
     taaatagtat tacgattaga aaaacacttt ttgtaaagaa tctcgaataa atgtatttga      2940
     ttaacaatta tacgatgcat cctttttttc caatatattt ttaaggatat acaatgttac      3000
     cgaagaaatc ttctaggttc gaactgaaac aataacgcaa tttttcacct ttatgcaaaa      3060
     acgaacgtta aaattgaata actatacgta gtgagatata tggggatgtt cgtaatagaa      3120
     ttctctacga caccaaattt ttttacattt cttgccccac ggtaccgtta caaaatttca      3180
     aaggtgaata aaaatgctaa aaatgcg                                          3207
//
ID   EnSpm-1_DTa repbase;    DNA;    INV; 7247 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   22-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7247
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4700-4700 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(972..1026,1132..1256,2416..2451,2510..2719,
FT                 2784..2925,3199..3377,3435..3588,3763..4018,
FT                 4389..6279)
FT                 /product="EnSpm-1_DTa_1p"
FT                 /translation="MDNLLTTLKGEAFGKIFQDLHVSESCLRVMTWEQLSS
FT                 IIPKELAGPAIIFFHGLKTWQNAGKLQTSTGNHREIDLPQILAKNEKATLI
FT                 FKFFAKENRLDSKYRKLLSNIISEYMVINDILPKQPVLDKVAFDITTLFDC
FT                 EIKETYFIKIKGKKPGGLLYSNWYNFQTKFKESSIRKNKENIPPSQVLTLA
FT                 DEVAVDLDWLKYNIEPREVVLEKWSNTYQWRFDLLKTNISLENVFEDFPIL
FT                 KQSFGYQLIEADFQKAYEGSSHYFDQWDTFKTRFVSAALLKIKDKQSLNIL
FT                 KSFNEQLEETQNLLVLLLMHAVLPPTARIKRSDKLKRLTVEDSRIAFVIWR
FT                 PTVGEIETYLKEIIELRYLSKTTLQPIICLKGSSPYDITEYYFFKHFKSHM
FT                 LTKNEHQSEYFNEVVQSENDILTYPERDNIIFQHELPQAKESIPMDIEEEN
FT                 LYQHSFAFNLNLGSQLNFPRSEVYKIQKQVELNITTPIHKEIKCILENTST
FT                 LSEIKERLVNLSTFCEHPFKNVENEYKTIKNLEKLNLYREPQIITINSEIA
FT                 PLRVKNKMTLGDKKNKGVILPLEFQLKSFFELPNVFKSCMKNLNFYEAQTK
FT                 ITNFTNGLLWKKIKSNNKDKQYKIPYFLYTDDFEINNPLGPHRSPLTGVYL
FT                 SFPSVPLEYNTIFTAAIYKSEDVKRLGNSKCFFKFIEVLKKFEDRGVHIKV
FT                 DGEEYTVYLILGLILGDNLGLNGILGFTTSFVSNFFCRFCKISKQDSYVSF
FT                 NVCTQSLRNEENYKNDLSLSDLSMTGIKSDCLFNQLQNFSVTSNYAVDILH
FT                 DLFEGVLRYDICHIIMYYIKQKIFDLEFLNIRKTDFDYGEAEIGNICPAFQ
FT                 LNLLKKFNIKATARELLTFITFFPLMISDKIPKNDSVWQFVKNLLKLIDLV
FT                 TLSDYSKDDIKTLQSVILAHNRDYQILFEDNLKPKHHFLNHYPKIVEQSGP
FT                 LKYLWTFPFEAKHKSLKSYCQNTMSRRNILLSLSMKISFQFAKKLQNSKTN
FT                 ELVLSKTKCF"
XX
SQ   Sequence 7247 BP; 2536 A; 1054 C; 1003 G; 2652 T; 2 other;
     cactcaaaaa attatttttc ttaaatatag aaaaaaaaaa tttttctgtg tttaagaaaa        60
     aatgttctat aaagagaaca aattttctaa tcttcagaaa aattttctaa tccccataaa       120
     aattctctat tgaacgattt tttttagaaa tttttttctc aaatacagaa aaatccattt       180
     ttttctaaat tataaggttt atttttctaa ttttcctttc tttatttggg ggtgaaaatc       240
     gccattggtt ttagaaaaaa aaagactaaa cttttctaaa aataaaaaaa aatcgccatt       300
     agcattagac aaatttttac ataatagaaa tattgctttt ctaaaaaact gaaatttttt       360
     ttaaaacata tttcttaaat gtagacatat maatataaaa catagaaaat ttttctaatt       420
     cccatgttta tagggctttt tatttcttaa acatacgtgg tatttttttt tttaagaact       480
     tcttctcaaa ttcttattat tccgggtaaa tttttcttat tttaaaagaa atatattttc       540
     ctttctaaaa ttcagawatt tgtcacacat attacatttt aagaagtggg tttatttcta       600
     catatgtaca tatgtatatg tacatatgta tgtaaatgta atctaagttt tgtaaaggaa       660
     cacctttata aaatcgaaat gtaaaaataa acttgatttc cccttattgc ccttttaatc       720
     tcatcctaac aagcgttaca tctttcggct gttcttcccg acttgttttc gaagcaaaaa       780
     aagtaggcga aaaagaagat aaattcgttt cgttttccat ctgcgtccct cttgtgcata       840
     tcattcgctc tgtgcataac tgttgttttc agttgcctct gtgcgcgtcc gttttccttt       900
     tcgcgcgtga tgaactaatt gcttagcact atcacattta gtttttctga agtgttcgat       960
     ctgtgcagac gatggataac ctgctaacaa ctttgaaagg cgaagccttc ggaaaaatat      1020
     ttcaaggtat gtacatatgt atgtatgtaa ctaaaattta taattctttt aaaacgggga      1080
     acataaaatt taactgttta tatacatatg taaatatatt tttctttcaa gatctacatg      1140
     tttcagagtc gtgtcttcgt gtcatgactt gggaacaact cagttctatt atccctaagg      1200
     aactggctgg cccagcaatc atttttttcc acgggttaaa aacttggcaa aatgcagtaa      1260
     gttaaacaat aaagggttaa ccagagaact tacatacatg catagataca tacatacata      1320
     catacataca tacatacata tgtatgtgtg acttttttct ctttccgtta gttttcttgc      1380
     cttgttctct gtctagcatt tatctatttt cccattgcac cacttggtca cattaaaatt      1440
     cgatggacgc ggcaaatgaa cgacgcagaa acgctagaga gttgagttct tatatttaaa      1500
     acctattcca atttgtgttt gtgtgtttga aattaaataa ggtaacaaaa tatgtttgta      1560
     catatgtatg tatgtatgca cataagtgta aagagaattt cgtaatcttc ggccacgtta      1620
     taataaaaca tttatttcgc tgccaagtgt attattttat tgtggtaaaa ctgattgcaa      1680
     aataaatgta tccagtgcat ttgtgaaaat gtcttctaaa ctgagatttt agttcaagac      1740
     acaaacgaaa cacaaaattt gttcatttaa atatcaacat acatatatgt gtgtatgtaa      1800
     atcagcggtg ccgtaaagta gtacatgccg atatgtttgt gtgtgtgtgt cgatcgctgg      1860
     ctttagcagg ccatccacag tctaatatgt tcggcgaaca tgttcatgtt cgtcgttggt      1920
     ggtagtgttc gcgttcgaat ttcatataaa tttgttcgac ggtttgttta acaaagatag      1980
     aaacgattct atcttgcctg ttcgcgaaaa tgttcgtcta acaaattcga ctgtggatgg      2040
     cctgctttca aatcggcaaa tgaataaatg tggatgcctt gtgtctactt gcagtcagtc      2100
     acaaaagtat tcgttgcgag gtggttcata aacaaactaa gttttttttt aacattaaag      2160
     taaccaatta attcttttat taattttttc agtttcaaca cattcaaaat atctaaaata      2220
     aaataacatg ataataattt ctgaaaaaat tattaaaaga attaattggt tactttaatg      2280
     ttaaaaaaaa cttaatttgt ttatgaacca cctcgcaacg aatacttttg tgactgtctg      2340
     tatatgtact tccatgttca taaatataaa catttggaaa acgcaatttt aaatctttcc      2400
     taatattttt tcaaggggaa attacaaaca tcgacaggaa atcatagaga ggtaaaatat      2460
     atgaaaataa cggaaaaaaa gtgtattaaa gcaaattaaa taatttcaga ttgatttacc      2520
     acaaattcta gcaaaaaacg aaaaagccac tttaattttt aaattttttg ccaaagaaaa      2580
     tcgtttggac tcaaaatatc gaaaattatt aagtaacatt atttcggaat acatggtaat      2640
     aaatgatatt ttaccaaagc agcccgtact agataaagtt gcttttgata ttacaacatt      2700
     gttcgattgt gaaataaagg tttgccaaat caaaaaaaaa aaatataaaa taaatttaaa      2760
     ataataaaat caattgattg caggaaactt attttataaa aataaaagga aaaaaaccgg      2820
     gtggactgct ttacagcaat tggtacaatt ttcaaacaaa atttaaggag tcatctattc      2880
     gcaaaaataa ggaaaacatc ccacctagcc aagtactaac tttaggtaaa ttttatttta      2940
     tttaatttat ttatttattt atctttttat ttatattttt attttcattt ctatttattt      3000
     tttctatttt tattttactt tcatttataa tttttttttc atttctattt tcatttttat      3060
     ttctgttttt tatttttatt ttcatttctt tttttattta tatttttatt ttcatttcta      3120
     ttttattttt atttctattt ctattttcat ttatattttt atttcactgt tttctttttg      3180
     gttttgcttc tattcaagct gatgaagtcg cagtcgattt ggattggctt aaatacaata      3240
     ttgagccgag ggaagttgta ctcgaaaaat ggtctaatac atatcaatgg aggtttgatc      3300
     ttttaaaaac aaacatttca ttagaaaatg tttttgaaga tttccccatt ttaaaacagt      3360
     catttgggta tcaattggta agtctcttag ccttcagctc atttccaata tgtaattttt      3420
     aaatttcgtt gcagatcgaa gctgattttc aaaaagcgta tgaaggcagc agccattatt      3480
     ttgaccaatg ggacactttt aaaacccgtt ttgtatcagc agctcttttg aaaattaagg      3540
     ataagcaaag ccttaatatt ttaaagtcgt ttaatgaaca gttggaaggt aatatatctt      3600
     ttaaagttta atattaaatg taatttggct ttactttgaa aaccatacaa acatatttcg      3660
     caaaatttat tttttcacat atttgacttg tttgaaactt tggtagttcc cataattatt      3720
     ttttatttat tttgttttaa caattccttt ttttttcaac agaaactcaa aatcttttgg      3780
     tactactgct gatgcatgct gttttgcctc caacggcaag gataaaaagg agtgacaaat      3840
     taaaaaggct tacagtagag gactccagga tcgcatttgt tatttggaga cccactgttg      3900
     gtgaaataga aacctattta aaagagatta tagaattaag atacctaagt aagactactt      3960
     tgcaacccat tatttgtcta aaaggttcaa gcccttacga cattacagag tattacttgt      4020
     atgtctcaag tgtattttat aagtttgata atattcttaa ttgtttggac gtatgtttta      4080
     agtgtttctt tgttttaaat ttaaaatatc cggttgagtg ctcgttgttc tggacattca      4140
     ttcagaaatt tttttacaac attcatttaa caacagattt aaaaagcaga tcgttgtccg      4200
     agttattgaa agaacttcaa ccaaacaaca ttaatctttt aaaaaatgat gttgatatgc      4260
     aaactttgta aaagtcgtag ttttgacgat ataaatattt tcatttctca tattaaagag      4320
     ttacatacgt atgacccgta catacaactt ccttgtggat actctgattg ttctaacgtt      4380
     ttttccagtt ttaaacattt caagagtcac atgctaacaa aaaatgaaca tcaatctgaa      4440
     tattttaatg aagtcgttca atcggaaaat gatattttaa cgtatccaga aagagacaat      4500
     ataatatttc agcatgaatt gcctcaagca aaagaaagta ttccgatgga catagaagaa      4560
     gaaaacttat atcaacattc attcgcattt aatttaaatt taggttcaca gttaaatttt      4620
     ccccgcagtg aagtttataa gattcagaaa caagtagaac taaacataac aactccaata      4680
     cataaagaaa tcaaatgtat tttagaaaac acttcaacct taagtgaaat taaagaacgg      4740
     ctagtaaatt tgtctacttt ttgtgaacat ccttttaaaa acgttgaaaa cgaatataaa      4800
     accattaaaa atcttgaaaa gttaaattta tatagggagc ctcagattat cacaattaac      4860
     agcgaaattg ccccactaag agtaaaaaac aaaatgactt taggagataa aaaaaataaa      4920
     ggggtcatat tacctttaga gtttcagtta aaatctttct tcgagcttcc aaatgttttt      4980
     aaaagttgta tgaaaaatct taatttctat gaagctcaaa caaaaattac aaattttaca      5040
     aacggacttt tgtggaaaaa aattaagtca aacaataaag acaaacaata taaaattcca      5100
     tattttttat acactgacga ttttgaaata aataatcctt taggaccaca tcgcagtccg      5160
     cttacaggag tgtatctttc ctttccgtca gtacctctgg aatacaatac tatttttaca      5220
     gcagctattt acaaatcaga agacgttaaa agactaggca attctaaatg tttttttaaa      5280
     tttatagaag tgctaaagaa atttgaagat agaggtgttc acataaaagt agatggcgag      5340
     gaatatacag tttatttaat ccttggttta atactaggcg ataacttagg gttgaacggt      5400
     attttaggat tcaccacttc atttgtttca aatttttttt gtaggttttg caaaatatca      5460
     aagcaagata gctatgtctc atttaatgta tgtactcaaa gcttaagaaa tgaagaaaat      5520
     tataaaaatg acttaagcct ctcagatctc tctatgacgg gaataaaatc agattgtctc      5580
     tttaatcaac ttcaaaattt ctccgtaaca tctaattatg ctgtagacat tttgcatgac      5640
     ttatttgaag gcgtgctgag atatgatatt tgtcatatta ttatgtatta tattaaacaa      5700
     aaaatatttg acttggaatt cttgaacata agaaaaacag attttgatta tggagaagct      5760
     gagataggaa acatatgtcc agcctttcaa ttaaatttat taaaaaaatt caatatcaaa      5820
     gcaactgctc gtgagctatt gaccttcata acattctttc cgctaatgat ttccgataaa      5880
     attcccaaga acgatagtgt ttggcaattt gttaaaaatt tacttaaatt aattgactta      5940
     gtaactttat cagactattc taaagacgat ataaaaactt tacaatcagt aatacttgct      6000
     cataaccgag actaccagat tttatttgaa gacaatttaa aaccaaaaca tcatttttta      6060
     aaccattacc ccaaaatagt tgagcaatcg ggtccattaa aatacttgtg gacatttccg      6120
     tttgaagcta aacacaagtc tctgaaatcg tattgccaaa acactatgtc cagaagaaat      6180
     attttattat ccctttctat gaaaattagt tttcagtttg ctaagaagtt acaaaactca      6240
     aaaactaatg agttagtact aagcaaaaca aagtgctttg taagtaactc tttgttttac      6300
     acagaaattt caaaacttat accatattct caacaaattt gttgttattc ctttgtcaag      6360
     ctacgaaatg tgttatacaa aaaaacattt atattatact catttgaacc tttttttaaa      6420
     tcttttgaga ttaaagaagt aatgttggtg gaaaatgaga taacattttt gtgcgttgaa      6480
     attgaaacta ttttttgcga gcatacaacc tgcttcatga aaactggata tttaaattat      6540
     aaattaatta ggttatcaga catatgtcac ccacccgcac aatttcattt acttaacaac      6600
     aacagctata ttaagccaaa attttatttt taattatatt ttgttttgat attatgttta      6660
     aaacgtaaac tataaagtgt gttgaaatgc tagaaaagtg acctcgagtc cgataaagtg      6720
     ctcaataaaa catttaaata aaaaaaaaca tttctagttt ttatatattt agttgtgggt      6780
     ttatttaaac aaatttaaaa aaaaattaca gcctttttag gaacatatta ttaaaaatgc      6840
     aggcatcgtt ttctaaaaca aaatacatat ttttctagat ttatggaaaa tgtttttctt      6900
     tctgggaaac aattttctta atttcgaatt ttttttcctt taaataagga aaagtttttt      6960
     aaaaaacata aaactttttc tttgggttta gaaaatatgt ttctatatta aaaaaaacgg      7020
     tatttctatt tcttagaaaa cctttatttc taattgtaag acataacttt tttactttct      7080
     agtaaaaaat ttctcaatcc cagatgtttt ttttttgttt tttagaataa aacgcctttg      7140
     attttaaaaa cctactttct ttaatataga caaaatcgcc agtaaagcaa atccataggc      7200
     gattttctaa aaccaaaggc gattctaggc gttttttttt ttgagtg                    7247
//
ID   EnSpm-1_LMi repbase;    DNA;    INV; 2323 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2323
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2978-2978 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           355..2013
FT                 /product="EnSpm-1_LMi_1p"
FT                 /translation="MSGRQCVNSPDTFCYICGNYVIRARRRQITKFVQKSY
FT                 FAYFGMKLGDQDKSFAPHIVCHTCVEQLRKWSEGKIKCLNFAIPMVWREQK
FT                 NHVDDCYFCMTNVTGYNRRNMKNISYPNLDSAIRPVPHGPGLPIPSPPTSV
FT                 DSLEFSEPDVSQESSESDYSECGTDSSPKPLTQTELDNLVKDLGLSKDAAQ
FT                 LLGSRLSENNLLAHGTSYSLYRNRDKDFREFFVEDGLMVFCKDIAGLVMKM
FT                 GAQKYESKEWRLFIDSSKRSLKAVLLHIGNDLGSIPIAYSVHLKETYNTMK
FT                 ILLQNVKYEEHQWLVCGDFKVIGILLGQQAGYTKMPCYMCEWDSRAYHEHW
FT                 SRREWPKRQNLTVGSKNIVNEHLVNPDHILLPPLHIKLGLMKQYVKALDKT
FT                 GNCFQYLCRQFPNLSAAKLKEGIFVGPDIRKLMSDEHFDSSMTEIELQAWR
FT                 SLKNVVHRFLGQNKQPDYKEIVEDMLQSFKQLGCKVSLKLHFLMSHLESFQ
FT                 ENLADTSEELKTMEHRYQGRWGINMMADYCWCITREGEVTHKRKDIKRSFT
FT                 GKRKRK"
XX
SQ   Sequence 2323 BP; 729 A; 422 C; 520 G; 652 T; 0 other;
     cacaggtcga catggattct ggggtttgga aagtaagtgg tgttctttac taaatttgca        60
     cccctgaata tgaaaatcat atcagttttt ttccatcacc ctcagttttt tctgcacagc       120
     taacccccct ccaaacctac cattggctgc gaaatctatg ttatgcagtg tccacaacta       180
     cagaaatgtg gcaacgctgc attttttgtg tgaaggtgag gcagaggggg ctaatgagct       240
     tggagctgac gttccattat cgccacagaa atcagtgagt gagtgctaca gctacaagaa       300
     ggtgctttcg cgctttgttg tgagtggtgg tatttcactg aaggtgtgtt aaaaatgtca       360
     ggaaggcagt gtgtgaatag cccagataca ttttgttata tctgtggaaa ttatgtgata       420
     cgtgcaagac gtcgacaaat aacaaaattt gtgcagaagt catattttgc atatttcggc       480
     atgaagctcg gcgatcagga caagtcattt gctccacaca ttgtgtgcca tacatgtgtg       540
     gagcagttaa ggaaatggag tgaaggtaaa atcaagtgct tgaacttcgc aattcctatg       600
     gtatggcgtg aacagaagaa tcatgttgat gactgttact tctgtatgac gaatgtaacg       660
     ggatacaaca gaagaaacat gaaaaacata tcgtatccaa acttagattc ggcaattaga       720
     cctgttcctc atggcccagg gctaccaatc ccctctccac caacatcagt ggattctctt       780
     gaattctctg aaccagatgt aagtcaagaa agcagtgaat ccgactattc tgagtgtggt       840
     accgatagta gcccaaaacc tcttactcaa acagaacttg acaatttggt gaaagactta       900
     ggactctcaa aagatgcagc acaactactg ggatcacgtc tcagtgaaaa taacttactt       960
     gcacacggta catcatattc attgtacaga aatcgtgata aagatttcag ggaatttttt      1020
     gttgaagatg gtttaatggt gttctgcaaa gacatcgccg gattagtgat gaaaatggga      1080
     gctcagaagt atgagagtaa ggaatggaga ttgtttatag attcttcaaa gcgaagtttg      1140
     aaagcagtgt tgctacatat tggaaatgac ctaggatcaa ttccaattgc gtattcagta      1200
     catttaaaag agacatacaa taccatgaaa atacttctac aaaatgtgaa gtacgaagaa      1260
     caccagtggc ttgtgtgtgg tgactttaaa gtgattggca ttcttcttgg tcagcaagca      1320
     gggtacacta agatgccttg ctatatgtgt gaatgggaca gtagagctta tcatgagcat      1380
     tggagtagga gagagtggcc taagaggcaa aatctgacag tgggatcaaa gaacatagtg      1440
     aatgaacatt tggttaatcc agatcatatt ttattgcctc cactgcacat caaattagga      1500
     ctcatgaagc agtatgttaa agcactggac aaaacaggaa actgtttcca atacctgtgt      1560
     aggcaattcc caaatctatc ggctgcaaag ttgaaagaag ggatatttgt tggaccagat      1620
     ataaggaagt tgatgtctga tgagcacttt gacagttcta tgacggaaat agaacttcaa      1680
     gcttggagaa gtttaaaaaa tgttgtgcat cgtttccttg gccagaataa gcagcctgat      1740
     tacaaggaaa tagtggaaga catgctacag tcctttaaac agttaggatg caaggtctct      1800
     ctaaaactac attttctaat gtcacactta gagagttttc aagaaaattt ggctgacaca      1860
     tcagaggaac ttaaaactat ggaacatcgt tatcaaggtc gttggggaat aaacatgatg      1920
     gctgactact gttggtgcat cacacgtgaa ggagaagtga cacacaagag gaaggatatc      1980
     aagcgttcat tcacgggcaa acgaaaacgg aagtaatacc tctacctggt aagtgcccac      2040
     cataatattt gcttcttata attcatatgc ctttcttcca attctttttt aaccacttta      2100
     ctgttccatt tcgtttccat tgtcccgtaa ttgctttcca atttccaatt tcattgggcg      2160
     cagagttaga caatggtgaa tatgatgatg atagtggtgg tgcaaaaacc tgacgtgcta      2220
     cagagaaaca ggctgcagat ttgtgatcag cagggtcaat ttagtcagaa attcatattt      2280
     tcatgcaaac cccagacaaa aagtcaaaat ttgtcgacct gtg                        2323
//
ID   EnSpm-1_NVi repbase;    DNA;    INV; 4143 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   EnSpm-type family - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4143
RA   Bao W. and Jurka J.;
RT   "EnSpm-type families from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 762-762 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1560..2417,2378..2587,2539..3561)
FT                 /product="EnSpm-1_NVi_1p"
FT                 /translation="FFIYKKYTFQITTFTEYENDLQEYLHRILLEDKITDS
FT                 SPAPKNPKSLNDMIKDINFFKPLSISADVSQGELLLMVLKYCLSNNTSVSA
FT                 MSNLCRMINTIFQTEVMPNSRYFLDQLFDSMDKVEFHAVCPNCTAYIGQFN
FT                 EIRDVKSCHTCTSELNLENPSNTSFFVLMDPSSQIRDLISIYQDHYDFVIK
FT                 ERVPETNFLNDIYDGKEYRKFVRSLPEQQKTNYISSVFNTDGANKFKCSQF
FT                 SIWPLFLMINELPRQQRMSKLVNCGLWFNKNKPDMSVFWARSLKCTRYECF
FT                 LGTFVEMLNKITKNGITCVIKGEERVLNLHIINCCVDSVARAPTQGIKQFN
FT                 GKCGCSWCYHLPYAIQWKMWLQLVLSSPLLEKSIVPRDHQTTIHEMMLATP
FT                 DNPVNGIKNPSALINLPYFNIISGFVPDYMHCCLEGVAKQITEYHIASMNN
FT                 DDITEIDYKINQITAPHQISKLSRQINLRDKWKAREWENYILYYSAVVLPE
FT                 HLTRNHYYHWLLFVESMYILLQEKISIEELNRADEMLHEFVAKTEQYYGQK
FT                 AMTYNMHQLLHLSQSVLNWGPLWCHFTFSFESGNHVLLKAIKCSKGVTQQI
FT                 IRYIKMNHALTVLQEFAYPRINELVKLFCADILQSHVQNCYKISDVTYVGK
FT                 GDSVDNPLLLNFNLSIDAAAHHKIIKDGCLYESNKREKKGQTIHSYY*"
XX
SQ   Sequence 4143 BP; 1479 A; 565 C; 635 G; 1464 T; 0 other;
     ccctggtctt ttttgcgtgt aacgagagtg aatataaact cgaaagcctt gtttgtttat        60
     ccaccgaaca aagttgtttt tttgtttagt tttatatttt taaatgttgt aaaaaaatgg       120
     acatagatat aaacgctacc gagaatttgg cgatgaagcc atttcaaaaa ggagtgctta       180
     cagacacaga aatataatat cgccgtctcg caatcacgta gaggttagta tattattatt       240
     gaaaaatatt tttgttatca atcaaattat ggaaagttat caataaacag tatgtatttt       300
     tttctcatag aaaacacggc aattttcatc tattggatct gaatcaataa atgatataat       360
     cgatcaaaat caatcaaata cagaagtaga agactgcgat caggtaataa ttgtatatac       420
     atcattttac tttttaataa tcaaattgtg tttacttggt tacaattttt atttcatttt       480
     gatacacgag gtatatatca ttcaaggtaa cttctaaaaa tttaatttgt aacaaataat       540
     gagttaaagt aaataatatg aacatgttga caaaaattta atacaaacga catttaactc       600
     tgtttttaag ttgaggaggt tctatcatga gggcaaatag tttttataat atattttttg       660
     catacgctca cttgcctagg gaatatcgat aaaacctttt tcagtgaatg tatttcatat       720
     aaaaatattt atgatgcata gaggtaccta ctgttcgttg ttaaaaacaa tacgtttgtc       780
     aaatattact ttagaaaaaa attctttaca aaaagtgtgt gttaaatata aaggtattcc       840
     caaatgaaaa gttaaaaaat gtgattctct ttgagactcc atatagaatt agaacgaata       900
     ttcttattat tatcgtcact gaggtatcca aaagactcaa aaatttgcat aggctgctgt       960
     atacgtattt acttgtgtag attttttgtg tagctgtaat attaaggtat taccgttgtc      1020
     tctaatcaaa atgagcactt ttttttaatt ctcgtttatt catgatattt tattttacaa      1080
     aagaagttgc ataaatgaac atacgccaaa tattgattaa gtattgctat taaatgatta      1140
     tatttgtcat aattatcatt aataaaactt ttctaaaaaa ggtcatttat tttttgaggt      1200
     taagtgtgac tttttttgct tttaatcaat tacttttaat acacgtatct atctaatcat      1260
     agttttcaaa cggtattaat agttaatgac gttcctacct taattaaggc tttacaaaat      1320
     gtaaagaaaa gtgtatgaac gtgaatgctt tggaaagata tttaattaga gcccccttaa      1380
     aatttatata acttatatta ggtcgactgt aacaaaatat ttgttccagt gtacgtgtct      1440
     tgttcattgt tattattatt gttattatta ttcttattat tattattatc atcattataa      1500
     ttattaatca tgtggctaac acatttttaa aatttttcta aaattttgaa aacaaataat      1560
     tttttattta taaaaaatat acttttcaga ttactacttt cactgaatat gagaatgatt      1620
     tgcaagaata tcttcatcgg atactactcg aagataagat tacagattct tctccagcac      1680
     ctaagaatcc caaaagctta aatgatatga taaaggatat taactttttt aaacctttat      1740
     caatttctgc cgatgtaagc caaggtgaat tattattaat ggttttgaaa tattgcttat      1800
     caaacaatac atctgttagt gcaatgtcaa atttatgtag aatgataaat acaatttttc      1860
     aaacggaggt tatgccaaat tcacggtatt ttcttgatca attatttgat tctatggata      1920
     aagtcgaatt tcacgcagta tgtccaaatt gtactgcata cataggacaa tttaatgaaa      1980
     tccgtgatgt aaaaagctgc catacgtgca catcagagtt aaatctcgaa aatcccagta      2040
     atacaagttt ttttgtttta atggatcctt catctcagat aagagatttg atcagtattt      2100
     atcaggatca ttacgatttt gtgattaaag aaagagtgcc tgaaactaat tttttaaatg      2160
     acatttatga tggtaaagag tacagaaaat ttgttcgttc tttaccagaa caacagaaaa      2220
     caaattatat tagttccgtt tttaatacag atggtgccaa caaatttaag tgttcgcaat      2280
     tttcaatatg gccattgttc cttatgatca atgagttgcc gagacaacag agaatgtcaa      2340
     aattagtcaa ttgtggtttg tggttcaata aaaataaacc agatatgagt gttttttggg      2400
     cacgttcgtt gaaatgttaa ataaaatcac aaaaaatggt attacatgtg tcataaaagg      2460
     agaagagcgt gttttaaacc tgcatattat taattgctgc gtagattcag tagctcgtgc      2520
     acctactcaa gggattaagc aattcaatgg aaaatgtggt tgcagttggt gttatcatct      2580
     cccttattag aaaagagtat tgttccaaga gaccatcaaa ctaccattca tgagatgatg      2640
     cttgctactc ccgacaatcc agtaaatgga atcaagaatc cgtctgctct aataaatttg      2700
     ccatatttta atattatttc cggatttgtc cctgactaca tgcattgctg cttggaaggt      2760
     gttgcaaaac agattacgga atatcatatt gcatcaatga acaatgatga cataacagaa      2820
     atcgattata aaatcaatca gattactgca ccacatcaga tttcgaaatt gagtcgacaa      2880
     attaatttga gagataaatg gaaagctcgt gagtgggaga attatatatt atactatagc      2940
     gctgtagttt taccagaaca tttaacaaga aatcactatt atcattggct tttgtttgtc      3000
     gaaagcatgt atatattact tcaggaaaaa attagtattg aagaattaaa ccgagctgat      3060
     gagatgctac atgaatttgt ggcaaaaact gaacaatatt atggacaaaa agcgatgaca      3120
     tataacatgc atcaactcct tcatttatct caaagtgtat taaattgggg acctttatgg      3180
     tgccatttta ccttctcttt tgaatcaggg aatcacgttt tacttaaagc aattaaatgt      3240
     tcaaagggtg ttacgcaaca aataattagg tatataaaaa tgaatcatgc actaacagtt      3300
     ttgcaagaat tcgcctatcc acgtataaat gaactcgtaa agttattttg tgctgatatt      3360
     cttcaatcac atgttcagaa ctgttataaa atctctgatg ttacttacgt cggtaaaggc      3420
     gacagtgtag ataatccatt attacttaat tttaatttat caatcgatgc agcagcacat      3480
     cataaaataa taaaagatgg ttgtttgtat gaatcaaata agagggaaaa aaaaggtcaa      3540
     acaattcatt cgtactattg aaagatgaca gatttgctcg cttagaacaa tttattgcag      3600
     ataaagaaaa taaaatagag cttactatct gcaatattgt aaaaacacga aagtttcata      3660
     caaaatatta tcataagtta cactacattg aagaaattga ggaagaaaat tctattgtac      3720
     ctactagaga aataaagagt atttgtatat ttttggaaat ttcgagaatt atgtatattt      3780
     tgcctatacc aaatttgtta cattattaat gctctatgtt caaataaatt ttaataattt      3840
     ttgtattaat ttttactttt attataccat tggatccact acaaaataaa acataatagg      3900
     tttttaaatc ttattttaga tattgtttta acactatcga aaccaattat aaaatgctta      3960
     gaattaaaaa aaaacatttt tgaccagatc atacattatt atacctcata tatctaaatg      4020
     attatcagct gattatcacc tgacgttttg gcatgattat caggtgaaaa tcaggtgatt      4080
     atcaggtgaa aatcaggtga ttatcaggtg ataatcaggt gacttttttc agtagggaat      4140
     gta                                                                    4143
//
ID   EnSpm-1_RPr repbase;    DNA;    INV; 2278 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA seqeunces: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm;
KW   EnSpm-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2278
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3226-3226 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(296..503,578..1074,1262..2029)
FT                 /product="EnSpm-1_RPr_1p"
FT                 /translation="MSSRKCKYDADAFCFICGQFIKVRDVKYELKTSHVLC
FT                 EAYEAYFDCPVRNQDKPWAPHVACSYCKRCLEGWYRGEKRSMKFAIPRIWR
FT                 EPKDHITDCYFCMVNPSRGKNAKPIEYPDLESSSAPIAHDLTRPVPEPPKK
FT                 LSQKSSSPFSSYKSNSDKEFLPTPEQPKHYLITSEDFNDLIRDLNLPKNKA
FT                 ELLGSRLKQWNLLDDVKITDQRTRHEMLQRFSRRKMDFVFVMTLKYREYNW
FT                 ELIGDFKMVGFLMGLQGGYTKYPCYLCLWDSRADSKHYIQRSWPVRTELCV
FT                 GKQNVKFEPIVEAEKVLMPPLHIKLGLMKQFVKKLDETSEAFGYLKKFFPK
FT                 LSEAKVKAGVFVGPQIRQIFADEKFPTLLNRTQKASWNSFKAVVSGFLGNN
FT                 KAENYEKLVEDMLTNFKAMGCRMSLKVHMLHAHLDKFKNNMGAYSEEQGER
FT                 FHQDIMNFEQRYQGQYNENMMGDYIWGLLRESSCEHKRKSKNVHF*"
XX
SQ   Sequence 2278 BP; 766 A; 351 C; 432 G; 728 T; 1 other;
     cacgactcta caaaaaaatt ttcgttcttt gtcctaaagt ttatactatt attttccagt        60
     tagttatgca caaaaacgaa aagaaaatac cttttttcgg tataaagttt gcttttgtga       120
     tagttataat aataatactc atttttcaat tttttcataa attttaattg attttaatat       180
     ttttaaaaag accgcgcggt gagagtgggg tattaacgtt tacactgtgc cgctagatgg       240
     cacccgagtg ataaacaacc atcaggtgtt atttacaagc ccagaataac ttaaaatgtc       300
     gtcacgaaag tgcaaatacg atgctgatgc attttgtttt atatgtggtc aatttattaa       360
     agttcgagac gtgaaatatg aactaaagac atctcacgtt ctctgtgaag cctatgaagc       420
     atattttgac tgtcctgtac ggaatcaaga taagccatgg gctccacatg ttgcttgtag       480
     ttattgtaaa aggtgtttgg aaggtaagca atttttattt aattaagcga tgaatccaaa       540
     ataatagaca tattaatttt tatttttata tttttaggtt ggtatcgagg tgagaaaagg       600
     tctatgaaat ttgcaatacc aaggatttgg cgagaaccaa aagaccatat tactgactgc       660
     tacttttgta tggtgaatcc gagtagaggt aaaaatgcaa aacctattga atatcctgac       720
     ctcgaatctt cttctgctcc aattgctcac gacctgacac gaccagtacc tgagccacca       780
     aaaaaattat cgcagaaaag tagctcacct tttagttctt ataaaagtaa ttccgataag       840
     gagtttttgc ctacacctga acaaccaaaa cactatctca ttacttcaga agattttaac       900
     gatctaatta gagatttaaa tttgccaaaa aataaagcag agcttctagg ctctcggtta       960
     aaacagtgga atttgcttga tgatgttaag atcacggatc agcggactag gcatgaaatg      1020
     ttgcaacgtt tttcacgaag gaagatggac tttgtttttg taatgacatt aaaggtatgt      1080
     ttgaagcaat tggcataccc tgtgtcccta gcgaatggcg tttatcattg acagctctac      1140
     aaaaagttta aaagcagttc tattgcacaa cggaaataaa tttccgtctc ttccaattgc      1200
     tcactcagta catcttaaag waaattatga aagtgtcaaa attttgcttg aatctgtaaa      1260
     gtatcgtgag tataactggg agctgattgg agattttaaa atggtgggat ttttaatggg      1320
     gctacagggt ggatatacaa agtatccgtg ttatttgtgc ttgtgggata gcagagcgga      1380
     ttctaaacac tatattcaac ggtcatggcc tgtaagaaca gaattgtgtg tcggaaaaca      1440
     gaacgtcaaa tttgagccga ttgttgaagc ggaaaaagtg ttaatgccgc ctttgcacat      1500
     taagttaggg ttgatgaaac aatttgttaa aaaactggat gaaacttcag aagcttttgg      1560
     atacttaaaa aaattttttc cgaagttatc ggaagcaaag gttaaagctg gggtttttgt      1620
     tggtccgcaa ataagacaga ttttcgccga tgaaaaattt ccaacgttgc tgaatcgtac      1680
     tcaaaaagca agttggaaca gttttaaagc agtagtttct ggatttttag gaaataataa      1740
     agctgaaaac tacgaaaagt tggttgagga tatgcttaca aattttaagg ccatgggctg      1800
     caggatgtca ttaaaagtac atatgctgca tgctcatttg gataaattta aaaacaatat      1860
     gggagcctat tccgaagagc aaggagaacg tttccatcag gacatcatga attttgaaca      1920
     acgctatcaa ggccaataca atgaaaacat gatgggcgac tatatttggg gtttattgag      1980
     agaaagtagc tgtgaacata aaagaaaaag taaaaatgtg cacttttaag ttattttcta      2040
     cttttctgta agctaatttg atagtaaaac ttaataaaaa taataaacat ttttatttca      2100
     atagttttat tttcaatcaa aaattaaaat ccgagatttt tgaaaatttc gttcaatcag      2160
     tcttctaagc acaaaagcaa agtttttcat gctatatatt ttttttccgt cttattacga      2220
     cctaaactac cgaaatttaa tgctttgcaa tcaaagtcaa atttcatgtt gacccgtg        2278
//
ID   EnSpm-1_SIn repbase;    DNA;    INV; 3032 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon sequence - a consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2983
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 314-314 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. ~300bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           861..1868
FT                 /product="EnSpm-1_SIn_1p"
FT                 /translation="MENLTQENSNNLSNIFPIGIHSCEGKSNNFCYICGKF
FT                 AIPQNRRSINAKMKKIYKKCFNLEISNQDANWVPHIVCSCCYIMLDRWNNK
FT                 SSQKSMKFTRPMIWKRPLNREECYICMTNTIGVNKKNKSYICYANVQTVET
FT                 PILALDTTIEMVEEMDISNEPPPESTEIEESSDRDDINDSSIDSYDDSEDN
FT                 EDAYSIDKRKQKVMKTFTQKELNDLVKNLGLPKDGAEFLASTLKKKNLLAK
FT                 SAKVSFYRNREKEFREYFSKDETSLLVYCTNISGLINALKPGCYKEEEWRL
FT                 FIDFXIRSLKAVLLHNRNIYASVPVAHSISMKENYENVKKFLKK"
FT   CDS           1844..2677
FT                 /product="EnSpm-1_SIn_2p"
FT                 /translation="KCKKVLEKIKYAEHMWQICGDLKITSMLLGQQSDFTK
FT                 YPCFLCLRNSRDRENHYKRKVWPERTMMTPGCMNIIDEPLVDRRRVLLPPL
FT                 HIKLGLMKQYVKALDKDGECFRYLGRKFPQISDAKLKEGIFDGPEIRTLLK
FT                 DETFITTTNAVEKAAWLSFKNVTENFLRNHKSPNYKRMVEEMLANFQNLGC
FT                 LTNLKLHFLHSHLNYFPENLGDYSEEQGERFHQDIKEMEHRYQGRWDVNMM
FT                 ADYCWSLKEDLPRRGTKRKRMPLRRTFENKRMRYNKI"
XX
SQ   Sequence 3032 BP; 1067 A; 518 C; 609 G; 836 T; 2 other;
     ccttgaaaaa tagtgtaatt ttaaggaatt tcggccattt tttgagagta aaaaaaaatc        60
     ctgatctgat ggcgcaattc tgaggtcata ttcggtttca gagcgtcaaa atacataggg       120
     atacacgggt aaaatctctc agacatgaca cttttcttat cctcaaaaaa ttgccaacat       180
     tccttaaaat tacactattc agcccggatc ttcctttaat taaaaaacat caaaaatgtt       240
     atgcaggttt ttcgtacata tttcaaagtg ctgaagtagt agtaaataga ctctgaaacc       300
     cgaaagttcc aaacccgggg gagttttcgc tgttcgatgg gtgttcggcc aaacagcgcg       360
     gatcggtgga cggttcgggg gtggtcgaaa agcggtttgt tacaagttat atcaatccta       420
     gtcatatctt aatgctgttc atccgagacc caatttcact gataaaactg agcatagttc       480
     tttgacatta cacattttat attcgtattt acctgttgtc aatcatgaac aaggatttgg       540
     attttttttt caaagttttt tctgctgccg gaacggatgc tgcatgcgat gacaactgcc       600
     ccataagggg atgtgtagaa tgattcgatt ttgcgatccg ttttggtaac gaagccagcg       660
     aaggcgcgct gccctgcaag ggacgttagg gtgtgaggat gaagccgtag tgtgtccgac       720
     gatgagttga catagtcctc atcaaagtcg gaaagccctg atacttaggc ttggggaggt       780
     atcagggtta tcacccccag gacggtggac tcatctgcga tcggaacaga atccctaacg       840
     tgcgggtttt acatttaaat atggaaaatt taacacaaga aaacagcaat aaccttagca       900
     atatctttcc aattggaata cacagttgtg aaggaaaatc aaataacttc tgttatattt       960
     gtggaaaatt tgcaattccg caaaataggc gatcaataaa cgctaaaatg aagaaaatat      1020
     ataaaaaatg cttcaatctc gaaataagca atcaagatgc gaattgggta ccacacattg      1080
     tatgtagttg ttgttatata atgttagatc gttggaacaa caaatcttca caaaaatcaa      1140
     tgaagttcac aaggcctatg atttggaaaa gaccgcttaa tcgagaagaa tgctacattt      1200
     gcatgactaa tacaataggt gtcaataaaa agaacaagtc atatatctgc tacgcaaatg      1260
     tacaaactgt tgaaacacca atactagcac ttgatactac aatcgaaatg gtagaagaaa      1320
     tggacataag taatgaacct ccaccagaaa gcacggaaat cgaagaatct agcgacagag      1380
     atgacataaa cgatagtagt attgatagct acgatgatag tgaagataat gaagatgcct      1440
     attcaataga taaaagaaaa cagaaagtta tgaaaacgtt cacacaaaaa gaacttaatg      1500
     atctagtcaa aaatttagga ttgcccaaag atggtgcgga atttctagcc tcaacattga      1560
     aaaagaaaaa cctattagca aaaagtgcaa aggtaagctt ttatcgaaat cgtgaaaaag      1620
     aatttcggga atatttctct aaagacgaaa cctctttatt agtatactgc accaacattt      1680
     ctggattgat aaatgcatta aaaccaggtt gctacaaaga agaagagtgg agactattta      1740
     tcgacttttn tatacgtagc ttgaaggcag ttttgctcca taatagaaat atctacgcat      1800
     ctgttccagt agctcactcg ataagcatga aagaaaatta tgaaaatgta aaaaagttct      1860
     tgaaaaaata aaatacgcag aacatatgtg gcaaatatgt ggagatctta aaataacgtc      1920
     tatgttacta ggccagcaat cagatttcac aaagtatcct tgttttctat gtctacggaa      1980
     cagtagagat cgagagaatc actataaaag gaaagtatgg ccagaaagaa caatgatgac      2040
     acctggatgc atgaacatca tcgacgagcc gttagttgat agaagaagag tcttacttcc      2100
     acctttgcat ataaaacttg gtttgatgaa gcagtacgta aaggccttgg acaaagatgg      2160
     cgaatgtttt cgatacttag ggcgaaaatt tccacaaatt tcggacgcca agttgaaaga      2220
     aggaatcttc gatggaccag aaattcgtac attgttaaaa gacgaaacct tcatcacaac      2280
     aacgaatgca gtagagaaag cagcatggct cagcttcaaa aacgtcactg agaattttct      2340
     aagaaatcat aaaagtccaa attacaagag gatggttgag gaaatgctcg caaactttca      2400
     gaatttagga tgtcttacga atttaaaatt acacttttta cattcgcatc taaattactt      2460
     ccctgaaaac ctcggtgact atagcgaaga acaaggtgaa cgatttcatc aagatataaa      2520
     agaaatggag cataggtatc aaggaagatg ggatgtaaat atgatggctg attactgctg      2580
     gtcgttgaaa gaagatttac caaggagagg aacgaaacgc aagagaatgc cattacgaag      2640
     aacttttgag aacaagagaa tgcgctataa caagatataa gctcctttat ttgaacatca      2700
     agttaacttt ttctcccccg ggtttggaac tttgggtttg agagtctatt tactactact      2760
     tcagcacttt gaaatatgta cgaaaaacct gcataacatt tttgatgttt tttaattaaa      2820
     ggaanatccg ggctgaatag tgtaatttta aggaatgttg gcaatttttt gaggataaga      2880
     aaagtgtcat gtctgagaaa ttttacccgt gtatccctat gtattttgac gctctgaaac      2940
     cgaatatgac ctcagaatcg cgccatcaga tcaggatttt tttactctca aaaaatggcc      3000
     aatattcctt aaaattacac tatttttcga gg                                    3032
//
ID   EnSpm-2N1_BTa repbase;    DNA;    INV; 4709 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-2N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4709
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 518-518 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 2-bp long.
XX
SQ   Sequence 4709 BP; 1436 A; 910 C; 877 G; 1486 T; 0 other;
     ccctgctaaa aatgttccgt gtggatgatt tccatgaagt tgatttccat gaaaaaatga        60
     cacggaaaaa tggaacagga aatatttcca tgtggctgat ttccgtgtgg ctgatttcca       120
     tgtggcttat ttccatgaaa atttttcatg gaaacgaaat catttccgtg aaaatttttc       180
     atggaaacga aatcatttcc gtgacaattt ttcatggaaa caaaaccatt tgcataaaaa       240
     tgatcacaag aaggtttcag taccatccaa attgctcacg gaaattaaat aaatcttaga       300
     atcaagacaa aggagacaag cgtcccaatg ggagcacatg atatttggac catgcagaca       360
     tgctcagtaa aatagaaaat gaacaaacaa cactcaccaa ctcgctcaaa tctgtaatcc       420
     actgggtcag aaaaatccac ttgaagacaa taaatccaaa tttccgatta gaactggtgc       480
     aggtacgaag gaacttttga aaacacgatg agtgcattgt aaaaatatct aaagcactct       540
     ttaacgtaag agaaaaatta gcaccatgat ttaatagctg atcaatacag aacaccactc       600
     tcagaaaagc actgacacaa cacgattttt cagtttagtt ttagaggaga aagcattttt       660
     caaaagatgc gacatcatag atccacagct taaataattt cacgatttac tacgatcatt       720
     gatgatatta aggtagccat cgattctcta cccgacgttc cttccacaca tgacaggaaa       780
     catctacagg catagagcaa atggcactga gcagcaatgt acatctgata aggcaagctc       840
     ctggaagtgt cgatctgcaa aaatacaaag cgggagacag atcatcaaat tgatctacct       900
     atggttaatg gccgtccttg gagacagaca ataaactacg taacaatata tcaaccacct       960
     tttgataaca gaacgaattt aaaatgagag caagaccctt ccttatggag ggagggccaa      1020
     gaaacattta aaaacggaac attttactac tgacaggtct gagccactga ataaaataca      1080
     ttccaccagt caataaaatt ttaaattttg aatgttgatg gataacctga ttgccagtat      1140
     acattgagtt gaaaccagtt gaaacatctg atacgtagag cggttcattc ttatagaagc      1200
     ttccgtaagt agttccagat aggtacttta aaattagaca ccggtcaaat gtagtacaag      1260
     agaggaaatg ggtgcaacaa aactttaatt gtccttgatt cttttgtgaa aggtgtgaaa      1320
     gtgaaaaatt attcattaaa ttacttactt gaggtgatgt ggtgatgtga gagataaata      1380
     taacctaact tttgtgaaga tgttcctagt tcctggaata atcgttcctt gccgatactt      1440
     ccagggttgt atttattatc taaataatta tcaggcaaat gttttcaaaa ggattaaaat      1500
     acaaaaactg gctttctata atcattatag cggctgattt tcactcattt tcatacgcaa      1560
     cctcgataaa aaggcaaaag gcggaaccgc ggaatggtcc ctcgtccaac tgttcgatgt      1620
     ccaactcgca ctcggaactc cggacccgga ccattgttca atttcaattc aatccaccca      1680
     gccagccaag ccatgccatg ccgtgaattt caaaatgaaa acttaatttg atctactttt      1740
     catgattctt aacgaagaat cgattgtatt atcggcgtct acttgactat actcagtttc      1800
     atcgaacaca ggtaaattat ctctctttca cttcttgacg acggacacac ctaagtatga      1860
     gcctgtcacc ttgtacttac attacacatt tgtcatgtca agctatactg atcaagtaac      1920
     tcgagtttaa ttttctttgc cgatttacga ttcagtcgat atgttctaac gagcgaggta      1980
     attgtgaatt ctattctctt ggtttgcgaa tgcatttact accatgtgct attcctaacc      2040
     gtggttacga agttgatcga agagtctacg tctaataaat ctatccactc cttccgtggg      2100
     aagggagata atctttcatc tatttagcat tgaagggaaa gaccagaatc aagatggtgg      2160
     atcttctgtt gcactctcta agtgcaaatc ttattatccg cggacttcat cacaagtaga      2220
     aacttcccaa ctcttgcagg cgagtgctat aggtagtctg ttggaacatc ctcatactgc      2280
     ctgcattttc cttgtgtctt caaaagaatc aaggacaatt aaagttttgt tgcacccatt      2340
     tcctctcttg tactacattt gaccggtgtc taattttaaa gtacctatct ggaactactt      2400
     acgaaagctt ctatgagaat gaaccgctct acgtatcaga tgtttcaact caatgtatac      2460
     tggcaatcag gttatccatc aacattcaaa atttaaaatt ttattgactg gtggaatgta      2520
     ttatattcag tggctcagac ctgtaagtag taaaatgttc cgtttttaaa tgtttcttgg      2580
     ccctccctcc ataaggaagg gtcttgctct cattttaaat tcgttctgtt atcaaaaggt      2640
     ggttgatata ttgttacgta gtttattgtc tgtctccaag gacggccatt aaccataggt      2700
     agatcaattt gatgatctgt ctcccgcttt gtatttttgc agatcgacac ttccaggagc      2760
     ttgccttatc agatgtacat tgctgctcag tgccatttgc tctatgcctg tagatgtttc      2820
     ctgtcatgtg tggaaggaac gtcgggtaga gaatcgatgg ctaccttaat atcatcaatg      2880
     atcgtagtaa atcgtgaaat tatttaagct gtggatctat gatgtcgcat cttttgaaaa      2940
     atgctttctc ctctaaaact aaactgaaaa atcgtgttgt gtcagtgctt ttctgagagt      3000
     ggtgttctgt attgatcagc tattaaatca tggtgctaat ttttctctta cgttaaagag      3060
     tgctttagat atttttacaa tgcactcatc gtgttttcaa aagttccttc gtacctgcac      3120
     cagttctaat cggaaatttg gattcattgt cttcaagtgg atttttctga cccagtggat      3180
     tacagacttg agcgagttgg tgagtgttgt ttgttcattt tctattttat tgagtatgtc      3240
     tgcatgacag atgtcatcca ttattacttt gcatgatgca tatttagctg aaagattctc      3300
     tttacacatg cctagtggaa gatacatgtg ggtttggaac tgctaacatg cgaactttga      3360
     aaaactacgc tgctatgata tagaaaatcc tacaagtcca agaaggtcta tgcgctgata      3420
     tcaattacat actgacatat acccgtcaaa caagttccca tggctgtcat agatggcctg      3480
     cccacaaagt atgtctgaaa gggtggccct aattttcatc aaggagcttt gagtacacca      3540
     tgtacttttt aagattattg tgcttattat tgctttcact tgagtgtaga tgtaagtaca      3600
     tactaagctt ttatccatca tacattttgg cacatttctt taattattga gcttcataaa      3660
     atttcaggta cttgattttc aggggctgag atcgaaatca tatcattaaa aaaaattggt      3720
     tccagcaatt cttttcaaat tctttacaaa aaaatttaga ggatttaata actgaagata      3780
     aaaacataac atgctaaaca ctaccttctg atgaaaaagt acttaagtga tgaccaaaat      3840
     tgagactttt ttcgatcacc ctgatatggg gatcttcttc acctcctttc taaacatacg      3900
     cctgagaaga aaaaatttga ctgctaatgc aacccgcaac aatgatcgta tagctcttct      3960
     ttcggttttt tcctttttcc cttcatttcc cccccccctt ccaaaactta agatttttcc      4020
     ttttcatgtc ataatgagcc catagcacag aagttttcaa aaatgattgg aattcacgaa      4080
     atttcatttt atgaagttac atataaaatc ttgcatctct ggtttgaacc gtataccgag      4140
     tataattcct tggcgcgcac cttgcggagc gccttcaaca tcgtagttat gcttcaaacg      4200
     cgacactcac gctccgatgt gtaattttcg catgttgcgc atgtcggagc gtatgtccag      4260
     tttagaattg cccaaaaatt gaaagatttt aaagccgcga aattcatgtt taaatccgca      4320
     atttttattt ccatgccgaa ctgagaaggg gattttcaat tccatgaagg cttgatggaa      4380
     atgacttggt ttccgtgtga gttgcatgga agtgttatga gttccatgtc gagctcacaa      4440
     ggaaatattt tcatttccat gaagacttga tggaaatgac ttggtttccg tgtgagttgc      4500
     atggaaacgt tatgatttcc atgtcgagct cacaaggaaa tgttttcatt tccatgacgg      4560
     cttgatggaa atgacttggt ttccatgtga gtttcatgga aacgttatga tttccatgtc      4620
     gaaggacatg gaagtcagac gatttccatg aaatcacatg gaaatcgggt catttccacg      4680
     tgaatccaca tggaacattt ttagcaggg                                        4709
//
ID   EnSpm-2_BTa repbase;    DNA;    INV; 9693 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-9693
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 520-520 (2018).
XX
DR   [1] (Consensus)
XX
CC   From a single locus. Mutiple insertions are removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           4601..7387
FT                 /product="EnSpm-2_BTa_1p"
FT                 /translation="MAENERKRRRYKLYNNKNSTSSIPRSTFFDRKKRDVE
FT                 EMEVEVSSDSAHTFPSLNAVHTATNANAVPIAIIPNVDACDSSGTNRKTSY
FT                 EAVQDLSDNIDGSLTYSLANFFIDDGGRDGFPTDSEDNSDSGDDYPPPPPD
FT                 PDPGDEDPPPLPDQDDDGNPPDQDPLPGPLGGNGNPPPNGPPPDYYGLDQL
FT                 VIPNVTLTKFEILVTIFHYSVRFGLSDVAVKALIAQLNLILGVEIIPASNY
FT                 IFNKIFFSTYTKNIHLYCPKCLLYLGKKEDCEEIQVCPADDCFTPVDAKSS
FT                 NNGNFFISISIADQIKEKLLNGHGDNLISYRQRRIADDNEIRDVFDCINFQ
FT                 TLERKVADQSDSFLTLTMETDGAPVFENSRNSVWPNQFYINEVDPKERFAP
FT                 YNVLLSAVWFGRSEPSMSTYLTPTIEELQRLATEGITWYRETVGREEVTKV
FT                 YCLNVSLDTIAKPKVMKMIQFNGFDGCYLCTHPGDPYENSLRYGYHENQFP
FT                 LRTEASMRQAMQEAEESGEIVQGMKGISPLMYFPLFKLPWGVVIDIMHSKF
FT                 LGVAKYLCSSIWMNPDHSDEDYYLTPPKISMINARIIKLKSPSKIGRTLRP
FT                 LSDCTHWKASEWRSWLFFFGPICLQGILPLPYFRHFCLLSAAIYFFSRSRI
FT                 PRNDIVHFGDFLSVFVRDFQQFYGLRHMTFNVHSCEHLKMCVTSNGPAWAY
FT                 SLEPFETGNFFIVRLVTGAKGVALQIVRRYCCCASIPAVVAQHPPLNDTVV
FT                 NYCDSILSMRRFKVASQCNGEVTTVGNKLRRVHIPSAEEAAAMTATFGPQI
FT                 LQHTTYIVQEVIYHGSIYTSSTLKDKKKDDSHVKLNDGRYMKVRSFYISSM
FT                 DVNQLFFIGKQLRLSDNGRSAVFSLPNFHIHVCHHYCYEDGLIAVPAIMIQ
FT                 ESLLFMCAENNISFVATFPNEFERN"
FT   CDS           join(3986..3713,2979..2822,2096..1815,1086..877,
FT                 336..229)
FT                 /product="EnSpm-2_BTa_2p"
FT                 /translation="MSEPYALVKFPDDEPNDQPVAVPQSFVKDFDPSNFKR
FT                 NMVAKVFWSPVDGETPTDIMREQGRVLDLTEVLDSDGSNEPLAGYYRAIVL
FT                 QIAESRRKLTELGDKRIIIPTKKAFLRGLELKADKGPPKKKVKGTTKSSNP
FT                 GYVSKAKLKKAVKASDSITTSTWEKKYKKEPEQSDTTDSGDEIVLKKDVKE
FT                 ELLAKEIQLKSCLKENKKLQEELEAMRELNRFWQRKYADDCERNEPLPDIT
FT                 NLATSGLQEVKEASTSTLKSKVCAGFSEIQVMKQVTNTASLKTKIPSGIHD
FT                 LNSKKQATTKEQTKNSMKNNGGFKSKWYRVLLGLSRNTQQATDTSPNGGGG
FT                 *"
XX
SQ   Sequence 9693 BP; 2879 A; 1841 C; 1759 G; 3158 T; 56 other;
     ccctgctaaa agtgttacat gtaaaatttt gcatgtaaat acagtttcat ggaaaattcg        60
     gatggaaatt ttttccatga aaatatttgg catggaaatt ttttccatga aaatatttgg       120
     catggaattt tttcccagat atttccatga aactgtattt acatgcaaaa tttggcatgt       180
     aaataaacct gcaggtttgc tcaggcgcgc tacgatgcca ttgtagtcct agcctcctcc       240
     cccattggga ctggtgtctg tagcctgctg agtatttctt gagaggccta acagtaccct       300
     ataccatttc gacttaaatc caccattgtt cttcatctgg gcatggaaac cacacagagt       360
     gaagtttttt aatattgtta cgaaaaatac atttttcctg gcttatcagt caacctgctt       420
     aaaagaaaaa ttatctcaaa attaattcat tttttttttt ttttagacaa attttacaaa       480
     ttttagaatg tttacaagtc gagcgtttta aaaatatgaa tgtaaaagtt atgtaaaaaa       540
     ttctagaaaa attatctcaa aattaattca tttagttttt ttagacaaat tttagaatgt       600
     ttacaagtcg agcgttttga aaatatgaat gtaaaagtta tgtaaaaaat tctagaaaaa       660
     ttatctcaaa attaattcat ttatttttnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnaggtgg cgcctcgact gaacgtggca ttttttcctc       780
     ctcaagaaga atagcatcat cattttggaa tattgcatcg tcgtcatcct tcattccaca       840
     tgtagaaaat tgctcctccg cgttcaaaat ttgtaccgag ttctttgttt gctccttagt       900
     agtggcttgc ttcttggaat tcaagtcatg aataccacta ggaatcttgg ttttcaatga       960
     tgctgtattg gtcacttgct tcatcacttg tatttcagaa aaacctgcac acaccttgct      1020
     tttcaatgtt gaagtactcg cttcctttac ttcttgcaac ccagaagtag ccaaattggt      1080
     tatatcctga aaagaaggaa aaccaaaaaa attgttgaga cggttaaata aaacctgttc      1140
     ttgtcacttt aaggtttcca aattttacat gggacctcat ggcacgaaaa cagtttcatt      1200
     agctacagca aggctaaaaa taaagttctt tcccccaatt tttcaactga gtgtactttg      1260
     aaatttattt catctaaaat aattgatgac ttagttcttc caaaaaatta tttaccctcc      1320
     ttatccggtg gacacttcaa ttaaatcgac tcttgcgaaa gtcaccggtg tcaattttga      1380
     gttttcctcc gtatatctgt ttttgggagg agtaaatgtc aaatcaatct gaaaaaggtt      1440
     atacctacac acgcacaact actttagctg tatgtaaatc taagacaatt tggcttgatt      1500
     cgacgtttct ttcccctgaa aactaaaaat ggacatcagt gtctttcgca caagctgatt      1560
     caattgaacc attcagtgga tgaaggaggt aagagacatt ttttggatat tgagtaaact      1620
     cagtggttta atgttcacaa ataacatggg gttttagttc cagtataagt tagtggttca      1680
     aattggtact gaaaactgaa aagcttatct tgacgactac gtaactcgat attcgagtaa      1740
     gttcacagtt tttcaactca ttatataacc agtcaaccac tttcattaaa gccttgaaaa      1800
     gtgtctattc ttaccggtaa tggctcattc ctttcacaat catcagcata cttcctttgc      1860
     caaaaacggt taagttctct catagcttcc agttcttctt gcaacttttt gttttctttt      1920
     aagcagctct tgagttggat ttctttagcc agcaattctt ctttgacatc ttttttcagc      1980
     acgatttcgt ctccagaatc tgtggtgtcg gactgttcag gctctttctt gtactttttt      2040
     tcccatgtgc tagttgtaat gctgtcactt gccttcacag ctttcttcaa ttttgcctat      2100
     agaagatcaa agaggaagaa attagtacac atcatagagt catttctact tcaatcagtt      2160
     atacagcatt agaacttcat gcagggacag gatgttttcc ctatcttcct ctgtatccgc      2220
     tgagtctttt tacttaaaag tagaaatatt ctatggtggt tctttaaatg gagtgctctg      2280
     agggaaagtt tatccttcca aaaatgttct cacctcaaaa ctacattatt ggctcattag      2340
     ttgaaaataa aatggaatgc acaatgttac aaacagcatg catgcaaaga aaagcaatac      2400
     atgattagag gcctttggga gacaaggcac atacagctgg agcaaaataa aaatgtattc      2460
     ggtaaacaat acattttgtt attagggggg gggggggggg ggggggggag atgcaatgaa      2520
     ctgcactgca ccaatacttc ccacctcgtc caaaaagttt cgtttaccaa atccatacaa      2580
     atcttaccac agctctaaat gcaaatactt cttgaaaaaa ttaagttttt agtagcttta      2640
     ataaaatttg tataattgtc aactatgaga gaaatttacg gcttaggtac taatatgtca      2700
     gtttaacatt atttttctgc cacaatgctc cctgtaatta tgacaattta aacttgtttc      2760
     actcgaaata gcaaaaaaag catgtgtgca ctagcactct aaatggcact atgtagatta      2820
     ccttcgagac atagccagga ttggatgatt tagttgttcc tttcaccttt ttcttgggtg      2880
     gtcctttgtc tgctttcagt tcaaggcctc ttaaaaaggc tttttttgtc ggaataatga      2940
     tcctcttatc acctaattcc gtcaactttc ttcgtgactc tgaaaggaaa aggaaatgtg      3000
     ggatagtgag tgagcatcat taaatggatc tctttaatca ggctactttt gggagatcta      3060
     agttgattat aaaatctggc tacaaggcat catataccta ctaagatttc agaaaactat      3120
     gttaaacttc actccaaagt ggaaggtaag atatattata agccagaaaa cctggaactt      3180
     caattggtgt acgtaaattg ccaaaaattt tatgctgcaa atcattgtgc caaaaatatt      3240
     tttatgacat agctctttat aggtaactcc ctgaatcgaa atactcaaaa atgctacaac      3300
     agccttctca tgactgaata tgcggaagct accgagtgac tttggaccag aattacggca      3360
     ctttgttcgc atccacttga tgttatactg ttccttgagg aactaacagg cttcctcagg      3420
     gtgacaaatc agagaccaaa ctaacatatt acttttttct gaacgtcctt acagttgtac      3480
     acattcaaaa cagtgataaa tcaccttgag ctgggtgtag agagacgagc agtgtttctc      3540
     aaagctagtt tgaacaaagc tgaaacaaga agattcatct gcatgtcgtt ctatgtgccg      3600
     ttgctacact tctagttcag caaacttatg aggtacagta aggccaagtt accctgtcat      3660
     aaccattaag atagatatca ctgaaaaaca aacaaacata agaagcactt accagctatt      3720
     tgtaggacta tggccctgta gtaacctgct agcggttcat tggagccatc tgagtccagt      3780
     acttcagtca gatcgaggac cctcccctgc tctctcatga tgtcggtggg agtctctccg      3840
     tcgacaggac tccagaacac tttggcgacc atattacgct taaagttgga tggatcgaag      3900
     tccttaacga agctttgtgg cactgccacc ggctgatcat ttggctcatc atcgggaaat      3960
     ttcacgagcg cgtacggctc tgacatgttc gtttctcgtt tgccacaaat cttcgcacaa      4020
     aaactataca ctgtgcacgt ttcctatgta cactgtacac gtatcctact atttacacta      4080
     tacaaaatag aaaaaagaaa tttattacat tctaattgct ctctgcgtgg aataagatgt      4140
     gatgaaatga aataattatc acacgaacgt gcacgcctaa taacgttagt aacgtttaag      4200
     tcgggtttag cgcgatgacc acatttacca ctctcctttt gtgaaaattt gtttgtaaac      4260
     accggttgat tttcagtagt atcatgtttt catggttcat agttaaggtt atgttctgta      4320
     taattacaca ctgtcgcgcg ggcttttgga cgttgcatga gaaattttat tttttcgatg      4380
     tgtttggaga acagaactca gtccgtcact ctgtgatgtg tgatttcctt gaagatgttt      4440
     tcatgcaagt accgtttttt ctgtgaagtg cgcgcagcga aataagtaag tgctcgttgc      4500
     aggcacgaaa ttacttaagt cttgaaatat atgttttgac taattttcta cccctctgat      4560
     aacagatctc tgtaatcagt aagtgccaac ctacactata atggcagaaa acgaacgtaa      4620
     acgcaggaga tacaaattgt acaacaataa aaattcgacc tcatccattc cgcgatcaac      4680
     atttttcgac cgaaagaaaa gggatgtaga agaaatggaa gttgaggtta gtagtgactc      4740
     cgctcatacc tttccttctc tcaatgctgt acatactgcg accaatgcaa atgcggtacc      4800
     tattgcgatc attccaaatg ttgatgcatg tgatagctca ggtactaatc gcaagacgtc      4860
     ctatgaagct gttcaagatt taagtgataa tattgatggg tctttgacgt atagtcttgc      4920
     gaatttcttt attgatgatg gtggcagaga tgggttccca actgattccg aagataactc      4980
     agattcaggt gacgattatc ctccgcctcc tccggatcca gatcctggcg atgaggatcc      5040
     tccgcctctc ccagatcaag atgatgatgg aaatcctcca gatcaggatc cgttgcctgg      5100
     ccccttggga ggtaatggca atcctcctcc gaacggccca cccccagatt attatggttt      5160
     ggatcaacta gtcatcccaa atgtaacctt gacaaaattt gaaatattgg ttactatttt      5220
     tcattattca gttcgttttg gtctttctga tgttgctgtg aaagctttaa tcgcccagct      5280
     caacttaatc ttgggagtag aaataattcc ggcaagtaac tacattttta ataaaatttt      5340
     tttctctact tataccaaaa atatacacct ttactgcccc aaatgtttac tatacctggg      5400
     taaaaaagaa gattgtgaag aaattcaagt gtgtcctgca gatgattgtt ttactcctgt      5460
     tgatgcaaaa tcctcaaaca atggtaattt tttcataagt atttcaatag cagaccaaat      5520
     taaagaaaaa ctcctgaatg gtcatgggga taatttaatt tcttatcgac agagaagaat      5580
     cgctgatgat aatgaaatta gagacgtatt tgactgcatt aatttccaaa cacttgaaag      5640
     gaaggttgct gatcagtcag actccttcct tactttaact atggagacag atggtgcacc      5700
     tgtgtttgag aactcaagaa attctgtttg gccgaaccaa ttttacatta acgaagttga      5760
     tccaaaagaa agatttgcgc cttacaatgt tcttctatcg gctgtttggt ttggacgttc      5820
     tgaaccgtca atgtctacat atctcacacc cactatcgaa gaactgcaac gattagcaac      5880
     agagggtata acttggtaca gagaaacagt tggcagagag gaagtgacaa aagtctactg      5940
     cttgaatgtt agtcttgaca caatcgctaa acctaaggta atgaagatga tacaattcaa      6000
     cggcttcgat ggctgctatc tgtgtacgca tccaggggat ccttatgaaa acagtttaag      6060
     atatggttac catgagaatc agtttccatt aagaactgaa gcgtctatga gacaagccat      6120
     gcaagaagct gaagaatctg gagaaattgt tcaaggtatg aaaggaatct cgcctcttat      6180
     gtactttcct ctttttaagc tcccctgggg ggtggtaatt gacataatgc actcaaaatt      6240
     tttgggggtc gccaagtatc tatgctcttc aatatggatg aatcctgacc actctgatga      6300
     agattattat ttgactccac ctaaaatttc tatgattaat gcaagaatta taaaattaaa      6360
     gtcaccctca aaaattggtc ggactttgag acctttatct gactgtaccc actggaaagc      6420
     aagcgagtgg aggagctggc tatttttctt tggcccaata tgtttacagg ggatcttacc      6480
     cttaccttat ttcaggcatt tctgcttgtt aagtgctgca atctactttt tctcccgcag      6540
     tcgtataccg agaaatgata ttgttcattt tggagatttt ttgtctgttt ttgtgagaga      6600
     ctttcaacag ttctatggct tacggcacat gactttcaat gtccacagtt gtgaacatct      6660
     taagatgtgt gtaacgagta atgggcctgc atgggcatat tctttggagc cttttgaaac      6720
     cggaaatttc ttcatcgttc ggcttgttac aggagcaaaa ggcgttgctc tgcagatagt      6780
     tcgtcgttat tgctgctgtg ctagcatacc agctgtcgtt gcccaacacc ctccactcaa      6840
     cgatactgtt gttaattact gcgactcaat cttgtcgatg aggaggttta aagttgctag      6900
     ccagtgtaat ggagaagtaa caactgttgg caataaactt agaagagtcc atattccatc      6960
     tgctgaagag gcggcagcga tgactgcaac ttttggtcct caaattttgc aacatacaac      7020
     atacattgtc caagaagtta tttaccatgg gtccatttac acctcttcaa ctttgaaaga      7080
     taaaaaaaag gatgactctc atgttaaact taacgacggt cgatacatga aggtgagatc      7140
     attttatatc tcttcaatgg atgttaacca attgtttttc attggcaaac agctaaggct      7200
     gagtgacaat ggcaggagtg ctgttttttc tctgcctaac ttccacatcc atgtttgcca      7260
     tcattattgt tatgaagatg gactgattgc ggtaccagca ataatgattc aggagagtct      7320
     tcttttcatg tgtgctgaaa ataatatttc ttttgtcgct acctttccaa acgagtttga      7380
     aagaaactga ggtaaatatg tgttgctggt ggcactctta cttaaattag tatgacgtat      7440
     gaacttttaa tcagtgcttt gaaaagaact cttgtaaaga caataaggta attgcctctc      7500
     ttaaagtaac acaagtgctc atttaagtaa tcttaattaa ttataaatca gaggctaatt      7560
     tcgaattttc gtgaaacatt tttaaattgt gtacccaaat ggaaacttgt gttaagtact      7620
     gagtggtgta aaagacttct ggaaccgcat ggtgatcgtt atgactattt aagcgcggat      7680
     atgcaatcca gcggatgcgt ggcaagaatg ggctcatgat aaattttttg attatcctcc      7740
     aatatctgat tagcacatac tcatctaaaa gaaaatggat atttcaaggt atttactatt      7800
     gttccttttc tttacattct ttgctagaac tttttttttt taaacttgca taatttaaat      7860
     tataagtcgg atcggaacat tatatctggc tagcatttaa aaagtaccac ctgcatgtct      7920
     tttttgagaa ccattgtatg cagtatggac attgattagt tggttttctg gttgtttaga      7980
     gggaaaatgt gccctttctg gtatgttaaa aatctaggtc aggatgactt ttaaatttat      8040
     ctaaaacact agcaatgtca aattttagtg cgtcaattaa ataatactgt ctgtctttcc      8100
     gtccttcagt ctaaggctca attttgcttg ctctccacga ttcatttacc tttataccta      8160
     taccacttta aagaccaaac agaaactttt gttaagaaat gtaactggga tgcttcaagg      8220
     ccgatttttg tcagtaaaaa attatttact cggatttatt gtgtttctca atgacgtgta      8280
     ttgccatata ttacagttta agaaaacgaa aaagagaaaa aaattatggt ttctaaacat      8340
     ttttttttgt ttatacacct atattattgc caaacttact cattcataaa cccgcatact      8400
     ctaatttcta gattttctgc gggccttgat tttcatataa tgcaaaatca cttagctagt      8460
     tctcgaaaaa aaattctgtt tgtttgaaag aaggaaaatt tcttgcttca tcttatgttg      8520
     catatcaagt tacaattatg tggtaaatga gatgcaaagg tacccaactg cagtatatat      8580
     taaggggtac ccctacatct gccccccccc cggaaatcat ttttttaaca tatttaattt      8640
     ttctacccac ttttttgggt agtcttacta agcataattt cctgagaaaa aagatgtgta      8700
     tttgggtatt ctagatcttt tctggaggta tatgacaact ctgtactcaa ccctaatttc      8760
     ggtcctcaga agagttactt ctttaagcag tttttcatac taaggtgaaa tcatcagtaa      8820
     taggacaccc ttaagttaaa tatgaaatat ttgtacctac tttaaaactg ttcttttatc      8880
     ttaaattaac aaggatctta cagagagcac atttagtcca aatttctgag cattttacac      8940
     tcctaaagcc acaagaatag aagatagagt agtagggtgt ctatcactgg tgacttcatc      9000
     ttagtcagtc aacttatttt gagttcagta tatggcacct agagacctaa ttttttttta      9060
     aaattatcat tatttttttt ctcttctttt ttctcttttt ttttaaaatt atctgaaacc      9120
     tatctaggtg ttggctctac caaacaggac aaaattattt tttttacaaa ttaaatttaa      9180
     gcagggccag catgcatgca ggaatctaca aaaatttgaa cccccccctc ctcctcgtag      9240
     gtgccgtata ccgaaacgtc tatgaaaaca caatttaggc caattaggga aatcaatttc      9300
     atttggatga acgtcagtaa tataggtcat taaatgaaat gaaataaata atatgcgcac      9360
     cactgacgga cccaatgttt ccatgcactt gggaggcacc agctatgttt catgcgatcg      9420
     gcgtggaaac tggaacattt ccatccaact tgcatgtaaa ccatactttt ccatgcagta      9480
     tagttttcac gttgcatggc aattacttta tttacatgca agttggatgg aagtggtcag      9540
     gatttccatg ccagcctcat ggaaacgtct cgccttccat gcgttacacc ccgatttcca      9600
     tgccaaatct catggaagtt ggctatttac atgccaaatc tcatggaaat cgtccattta      9660
     catgccattc ttcatgtaac acttttagca ggg                                   9693
//
ID   EnSpm-2_DTa repbase;    DNA;    INV; 6004 BP.
XX
AC   .
XX
DT   23-JUL-2021 (Rel. 26.09, Created)
DT   23-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6004
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4701-4701 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(4668..4579,4519..4223,4167..3850,3787..3628,
FT                 3456..3276,2733..2300,1933..1865,1813..905,
FT                 809..736)
FT                 /product="EnSpm-2_DTa_1p"
FT                 /translation="MNDDDIKEAVAPLGLRIEFRQKLYQWRNSQSGDKKQF
FT                 SEKPTDVVPAVSSCGKXVLIKSLHSLLNETQKGKAILEYEETHRNLSQTLR
FT                 DDLIAIIVEEAIFGNITIKVPDFQTLLDEICLLFPSQISVKEYYFIPRKGR
FT                 GNPSGKLYSKYRNRRSQKKKMERKSLEMVVSGADDEDSSICKAYKLTLSRT
FT                 CDDWDSVRDMWKKTFNLRQQDVTTLNNLEFFEAWNKFSHAKAFELIDIDFE
FT                 IMYPGKGFHLLSKWQEFRDKIFGYYEDNISNAQCKTQLTLAKKCTNLDAQD
FT                 FLIATLLNAVLPSSGRFRNEDGKLTRKATILDAQESFVLRLVTINDFEIQL
FT                 DRVINKETVEIKNECEILNNYVSEAYLPVNLDEPFVKEKVTKKSEIESMEK
FT                 QILEFSLILYEQNFMPRKNVCQIQKMTASLISTLGSLIEEQLDTKSKSEEL
FT                 QEIFVFCKXPFXXVKSEYKFLQALKKQNLYQDPMSFKIDQKIVKKVHRDIK
FT                 QYGVERSLHHLIEELKLLEQGAVIGDNLAVNTLAGFXQSFNSNHYCRACKR
FT                 SKFEMQFDTVEKPDYLRNPTNYKSDLLLNDIQSTGIKTNCVFHELDKFHIT
FT                 ERTCFDLMHDVFEGVCKYDLCNILLALIKNNIVTLNDINGRKSLFPFGETE
FT                 IGNKSNSLDLVRLKNYNINMTASETMSFTHFLPLMIGDLIPLDNPDWQILL
FT                 YLLAIIDLLFKSEFSKEDLNYLNSVVQKHHSAYIELYGALKPKHHFLVHYA
FT                 SAIKRSGPIKHLWCMRFESKLREAKLYTHNMNSRVNPAYSIAIKSGLKFSK
FT                 FLMDHQDSLEELFFLSKRTGLQRDEIQTKLLCCHTKSQCKII"
XX
SQ   Sequence 6004 BP; 2028 A; 933 C; 952 G; 2071 T; 20 other;
     cactcaggga aaaaatcaag tatttcgtgc ttgaatctag cattttgagt gtcaaaagtg        60
     agccaagcaa cgaaaatctg atcttgagaa cgaaatactg ctttcaagaa cgaattttca       120
     agaccgaaaa tacttgattt tagtacgttt taagaacgct cctttctaaa attaagaatg       180
     aatcattctt aaatgtagac atatttgtac ttgaaataag aaattttaat taacaaaata       240
     agaaaagtgc aggcttgaat taagaacgta taattcttga tcttagtaag atatattcta       300
     gaaggtagat tataaatgct taaatcaaga atattaaatt gttatattat gccccaataa       360
     ttcttataat aaataagaat acttcttgta ttaagatagc aggtgcttga ctttagagtt       420
     tcaagttctt ataacaaatc taaaatattc ttgaaamaag gtataataaa atttaaaaat       480
     cgtttatatt tttggtattt attctgttgg ttcgatttta tttataggta cttaaattta       540
     acataagatt ttgcgttgtt tattgtatat gagtgcaaag gaagagtaat aaattcacaa       600
     atgttaacaa tacatacgtt gtcggatgga taacctatct cgtaagaatg aaagtgtatg       660
     tcaaattttt tcaaattaat ttcattacat aaaatgaaaa cgttattctt aaaattaaca       720
     aaacttaaaa ttttatataa ttttacattg ggattttgtg tggcaacaaa gtaattttgt       780
     ttgtatttcg tccctttgta atccagttcc tgaaataaaa tacaattttc aaaagcagaa       840
     tcaaagtaat gaaggtagat taatttatcg aaatgttctg agtttttaag tattgtatca       900
     gtactttttg aaagaaagaa aagctcttcc aaagaatctt gatgatccat taaaaatttt       960
     gaaaatttta aaccggattt tatggctatt gaataagcag gattcaccct tgagttcata      1020
     ttatgggtat acaatttagc ttctctaagc ttcgattcaa aacgcataca ccatagatgt      1080
     ttaattggtc cacttctctt gatagcggat gcatagtgca caaggaagtg gtgcttcggc      1140
     tttaaagccc catataactc gatgtatgca ctgtgatgtt tttggactac actatttaga      1200
     taatttaagt cttctttcga aaactcagac ttaaaaagta aatcgattat agctaacaaa      1260
     tataaaagaa tctgccaatc tgggttatca agaggtatta gatcacctat cattagagga      1320
     agaaaatgtg taaaactcat agtttcactt gcagtcatat tgatattata attttttaaa      1380
     cgtacsagat caagcgaatt tgatttgttt cctatctctg tttcaccaaa cggaaataaa      1440
     ctttttctac cattaatatc atttaatgtt acaatattgt ttttgattaa cgctagcaaa      1500
     atattacata ggtcatactt gcagactccc tcaaacacat cgtgcattaa atcaaaacaa      1560
     gttctctctg ttatatgaaa cttatctagt tcgtgaaaaa cgcaatttgt tttaattcca      1620
     gtactttgaa tgtcgtttaa aagaaggtcg gacttataat tagttggatt tctcaaataa      1680
     tcmggctttt ccacagtatc gaactgcatt tcgaatttgg atcttttaca ggcgcgacag      1740
     taatgattag agttaaagga ttgtamaaat ccggctaagg tgtttacagc taaattatct      1800
     ccaatgactg ctcctaaaaa aaaaaaaatt msttgtgatc catttgatgt atcaacatct      1860
     acaccttgtt ccaataattt aagttcttca attaaatggt gtaatgatcg ttcaactcca      1920
     tattgcttta tatctgcagt cgaaataaac gcagtaggaa aaatatattg aagctttgag      1980
     agaagatact gaggaatgtt gggaaatata atgtaagctc cacaawttga tattttgtga      2040
     ctccccaaag ggttatctat ctcaaaatcg tcaaaatata aatgaaaagg aatgtgcaaa      2100
     tcasccggga gaaatgtttt aggtttatta cgaaatattt caccatttga aaagttasta      2160
     attgtggctt tcctagcaca gttgttgata ctatctaaag tatatttcaa cagaccaggt      2220
     wwttcgaaaa tacgcttaaa cataaatctt aacggcatta catttaatgt atatgatttt      2280
     ggagccattg tagacacacc tcgatgaact tttttgacaa ttttttgatc gattttgaat      2340
     gacattgggt cttgatataa attttgtttc tttaaagctt gtaaaaattt atattcggat      2400
     ttgacawtwt taaatggktc tttacagaaa acaaaaattt cttgcagttc ttccgatttc      2460
     gattttgtat ctaactgctc ttcaattagg gaccctaatg ttgaaattaa agaagctgtc      2520
     attttctgaa tttgacatac attcttcctt ggcataaagt tttgctcata caaaattaaa      2580
     gagaactcaa gaatttgttt ttccatactt tcaatttcag acttcttagt aactttctct      2640
     tttacaaagg gttcatcaag attaaccggt agataggctt ccgaaacata attatttaag      2700
     atttcacatt catttttgat ttcgacagtt tcccttttaa attgatttca ttatcgattt      2760
     tgtggcattt atmcaaatgt tttttaaatc gggagaactg ggaaaaggtt tggtgacaat      2820
     tttgttgcat acattgcagc cttagatttt tccctgataa aacatgatct actttaaagt      2880
     gagaaatgag cttattagtt tcggcaaagc cggttttaca aataaagcat tgaaacatct      2940
     tgaaatactg atttgtcaag tttacattac tttaaagaaa acgtatttaa tttttcagat      3000
     aatcaattaa agaagctatg ttagcagact tggtgtcgta tttggtttta atatcataaa      3060
     aatactgctg tataaacagc catgtctgtt gtgaagcttt cggatattca aaagataata      3120
     tctgaaatgt cttaaaacaa agctccagac aatttacgaa cgaagtgcaa cttattagat      3180
     ttgcatcaaa atacaaaaaa aaatctttta tatcgttatc aaatggccca actacgataa      3240
     ttattggctg taattttaag ccggaactat aatacttatt gatgacccga tccaattgga      3300
     tttcgaaatc attaatggtt actagtctta ggacgaaact ctcctgagcg tccaaaattg      3360
     tggcctttcg cgttaatttt ccatcctcat ttctgaaccg gcctgatgag ggaagtacgg      3420
     cgttcaacaa cgtggcgatc aagaagtcct gggcatctgc agtattggaa tagtaaatta      3480
     gagtctattt ataatacaaa tatttaatac ataaataaaa tatttataaa tcgtaatatc      3540
     caatttctat atttaaagtt caagagtatt taaaaaaaat tatatgctta actcttaact      3600
     tagtatattt gctgtaagaa gctttaccta agttggtgca ttttttggcc agtgtgagtt      3660
     gcgttttgca ctgtgcattg gatatgttgt cttcatagta gccaaaaatt ttgtctcgaa      3720
     actcttgcca tttggaaagc aagtgaaaac ctttgccggg atacattatt tcgaaatcga      3780
     tatcaatcta gaacaaaatt tgttatgaag atattgtaaa aaaaacgaaa atgtacatat      3840
     ttgacttacc agttcgaaag ctttagcgtg ggaaaactta ttccacgctt caaaaaactc      3900
     taaattattc agagttgtaa cgtcttgttg acgtagatta aaagtcttct tccacatatc      3960
     gcgtacacta tcccaatcgt cgcaagtacg gctgagtgtc agcttgtacg ccttgcagat      4020
     ggaactgtct tcgtcgtcag ccccagatac caccatttcc aaagactttc tctccatttt      4080
     tttcttttgg ctgcggcgat ttctatattt tgagtaaagt tttccagacg gatttcctct      4140
     accctttcgg ggaataaagt aatattccta aataaaaaaa tatttcaaaa tcaaatctaa      4200
     ctatttatag caaatatttt accttcacgc ttatctggct tggaaaaagc aaacatattt      4260
     cgtccagcaa ggtttggaaa tcgggaactt taatcgtaat attcccgaat attgcctctt      4320
     ctactataat cgcaataagg tcgtcacgaa gggtttggga aaggttacga tgggtttctt      4380
     cgtactccaa aatagccttg cctttttgcg tttcattaag tagggaatgc aaacttttaa      4440
     tcaagacggm ctttccgcaa gacgacactg cgggtacaac atcggtaggt ttttcggaaa      4500
     attgtttttt atctccgctc tacaaaattt aaaatattta cttaaattat attcacacat      4560
     ttatagttgg tcacttacct gagaattcct ccattggtag agtttttgtc taaactcaat      4620
     gcgcagacct aatggcgcaa ctgcctcctt aatatcgtcg tcgttcatgt attgcagttg      4680
     ctggatgtta acttgtgcag ctaagatgat gcacaaaaat attttaattt atgtagataa      4740
     ataaagttaa agtaaagaaa gcaaacacaa ttttcgtaag ttaatgagat atttgctaaa      4800
     aactattttt ggcattcaat attaaaaacg gattttctag gaatttcacg tacatatgtg      4860
     agatccgcat gtttagttga catcgacata catacatatg tacttatcga cagagttaaa      4920
     aaaagcgcgc aaattttcgc tttcaatgca catgcataca ttcatatgta catacataca      4980
     aacttgtgta catccatgag agactgcata agtcagtaca gaaataggca taaattataa      5040
     taataccgat tagaatcgaa aaatttctaa tgaaattaat accacgagca ttgacccgat      5100
     ttttcttttc tctttttcga tatgtacata catatatgta tatgtatgtg ctctagcgcc      5160
     acaaggccgg cctttaaatc acattgttaa acttttgtaa cattaaactt gaaacaaatk      5220
     ktatatttcc ttttttataa ttgaaggaaa agtaccggmg ttgtggcgct agggcacaca      5280
     catatgtaca catataagga actgcacgtg tgcgsttgat tcggaaaaca tacatacata      5340
     catattacga acacgcttgt aaaacttgag tgacttagag tgaccgtccg aattatttat      5400
     agaaaaacga caaacgagaa atattcctta ggctacggtc agacggccac actacgtaaa      5460
     caaaagtatc aaatggagcc aagaaaatat ttatatttca attttaataa attgaatggg      5520
     ataatctggc cgtagcaata aatatattat tagaatttct gtataatatt atacattata      5580
     ttatattaca ttattagaat ttctgtacac atttaaagtt tttagtaatt tccaaccttg      5640
     gtcataattg gagatataaa taaaataaaa attattataa ataataatgt ttttaaatag      5700
     tattttccat tattaccttt acaccattta ataaacgaga acttgtcaca taacacacat      5760
     atatggcaaa cactttctga actggaatta agtttgattc agtctcaaag taaatacttt      5820
     taaactcaat ttaagtattt ttgtattgag tttgagaata tttgtgcttg attggcattt      5880
     aagtttgaat cgtgctcaat tcaagaactt tcagtacgaa acgttcttga aattttaagt      5940
     atgaaatcgt tcttaaatca agactgattt tgcttgtttc cagcacggtg tttttttctg      6000
     agtg                                                                   6004
//
ID   EnSpm-2_LMi repbase;    DNA;    INV; 2299 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2299
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2979-2979 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           300..1970
FT                 /product="EnSpm-2_LMi_1p"
FT                 /translation="MASARRSCRNNPDAFCYICGEYTLSVDRKNITRFVKH
FT                 AYQAYFKVKLGDQDKSWAPHTVCKTCVEYLRRWTKGAKTSLKFGIPMVWRE
FT                 PFDHASDCYFCAINTTGINRKNRHSLQYPDLPSARRPVAHCEEIPVPAFTQ
FT                 LPHIDDDEATTSDNVGDTDQEYETQDGPQPFSQCELNDLVRDLSLSKTSSE
FT                 LLASRLKEKNLLGEDARITFFRRRHEEYMGYFCQEEDLVYCQDVAGLLHKL
FT                 GAPTYDPTDWRLFIDSCKRSLKCVLLHNGNQFASIPLAHSTTLKEKYEAVK
FT                 YVLDKIQYKQHQWMICVDFKMVNFLLGQQSGFTKYPCFICMWDSRDRVQHY
FT                 VKKEWPAREQLVPGARNIINEPLVDREKILIPPLHMKLGLMKQFTRALDKD
FT                 GRCFNYMCRAFPRLTIEKLKAGIFDGPQIRQLIKDTEFQNSMNTLECAAWK
FT                 SFVQVVNNFLGNTKAANHATLISSMLEAFQKLGCLMSLKMHFLFSHMDKFP
FT                 ENLGAMSDEQGERFHQDMRQMEERYQGRWDAVMLADYCWSLKRDNPAAAHT
FT                 RKSKKRRYLP"
XX
SQ   Sequence 2299 BP; 653 A; 528 C; 540 G; 577 T; 1 other;
     cactgggtaa cagccaaaaa atcgtccggg gtttcgcagc tgaattagac taaattcgat        60
     gccctgagtt cgaaaatgac cttggttttg ctcaatcagg tcaacttttt gagatacagc       120
     cataaacctg cctgacgagc tatacataca tatgctaata tcacgggttt tgagttcagt       180
     catttctcta aattcgctgc ctaaaaatta gcaggaaaat aatcacaatt attagtaata       240
     ttattattat tttataataa tattgtaata taatttaata atattattat tactttcaga       300
     tggcttcggc gcgacgttca tgcaggaata atccggacgc tttctgctac atctgcggag       360
     aatacacgct gtcagtggac cggaagaaca tcacaagatt tgtgaagcac gcataccagg       420
     cttactttaa agtcaagcta ggtgaccagg ataagtcgtg ggcaccgcac acggtgtgca       480
     agacgtgcgt ggaatacctc aggcggtgga ctaagggcgc caaaacttca ctgaagtttg       540
     ggataccgat ggtttggagg gagccgtttg accatgcatc ggattgttac ttctgcgcca       600
     tcaatactac tggcatcaac cggaagaatc ggcacagcct ccagtacccc gaccttccat       660
     ctgcccgccg tccagttgct cactgcgaag aaatacctgt accagcgttc acacagcttc       720
     cgcacatcga cgacgacgag gccaccactt cagacaacgt aggagataca gaccaggagt       780
     atgaaacaca agatggtccg cagccctttt cacaatgtga gcttaatgat ctggttcggg       840
     atctcagctt gtcgaagact tcctccgagc tgttggcctc cagactcaaa gagaaaaatc       900
     tacttggcga ggacgcgcgt atcactttct tccgtagaag gcatgaggag tacatgggct       960
     acttctgcca ggaggaagac ctcgtgtact gccaagatgt cgccggtctt cttcataaac      1020
     tcggcgctcc tacatacgat ccgacagatt ggcgactctt cattgacagc tgcaagcgct      1080
     ctttgaagtg tgtgctcctc cacaacggga accagttcgc ctcaatccct cttgcgcact      1140
     ccacaactct caaagagaaa tatgaagcag tgaagtatgt gcttgacaaa atccaatata      1200
     agcagcacca atggatgatc tgcgtcgatt tcaagatggt gaactttcta ctaggtcagc      1260
     agtccgggtt cacgaagtac ccatgcttta tatgtatgtg ggacagtcgc gacagagtcc      1320
     agcactatgt aaagaaagag tggccggcgc gagagcagtt agtacctggg gcgagaaaca      1380
     tcataaacga acctcttgtt gaccgggaga agatattgat cccaccgcta cacatgaagc      1440
     ttgggctaat gaaacagttc acacgcgctc tggacaagga tgggaggtgc ttcaactaca      1500
     tgtgccgagc atttcctcga ctgaccattg agaagctcaa ggccggcatt ttcgatggcc      1560
     cacagatacg gcagctcata aaggacactg agttccaaaa ctccatgaac acgcttgagt      1620
     gtgccgcctg gaaatcgttt gtgcaggtgg tgaacaactt cctggggaac acgaaggcag      1680
     caaaccacgc cacactcatc agcagcatgc tagaggcctt ccaaaaactt gggtgtttga      1740
     tgagtttaaa gatgcacttc ctgttctcac acatggacaa gtttcctgaa aaccttgggg      1800
     cgatgagtga cgagcaggga gaaaggttcc atcaggacat gcgccaaatg gaggagaggt      1860
     accaggggag gtgggacgca gtcatgctgg cggactactg ctggtcgctg aagagagaca      1920
     acccagcagc tgctcacaca cggaaatcga agaaacgccg atatctgcct tgaactctga      1980
     acttttgtgt catgtaacgc tcattcttat tatattttga ttattatgct tatcaaatgt      2040
     catatagtaa ataaatattg aattaatttg gatacgttga cttttatttc ttgagggaaa      2100
     cggaaagatt cgtcaggggt ttatcagcag acatttgttt ttcttacgaa aaacagattt      2160
     gtgtgaaata tctgtagacc aaaatcctga cctgattgag caaaaccaag gtcattttcg      2220
     gactcagggc atcaaaatta gtctaattga gctgaaaaac cctggacgat tttccaaaag      2280
     ttttttttkt tgcccagtg                                                   2299
//
ID   EnSpm-2_NVi repbase;    DNA;    INV; 2611 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   EnSpm-type family - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2611
RA   Bao W. and Jurka J.;
RT   "EnSpm-type families from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 940-940 (2009).
XX
DR   [1] (Consensus)
XX
CC   The 5'-end is not reached.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..2269
FT                 /product="EnSpm-2_NVi_1p"
FT                 /translation="MSLKYSVSNKLSVTGILNLLKFVNRLCGKNILPESKY
FT                 QFDQLCKNENTLTLHAVCLTCSMYIGTFEKSNKSVNCENCNSLIDVSNPSN
FT                 ACYFAIVNPSNAVRDYIESHENYYDYIVSERIHEPNVIKDIYDGECYKNFL
FT                 NNLNTIDRHAYATAVFNTDGAPVFESSNVSIWPIYIMLNEIPIHKRLNSTI
FT                 VTGLWFGTSKPEMSVFLDAFVESMNHLSTIGISATIKNQHRKIKLFTLLAC
FT                 VDTVARAPMNGTTLFNGKYGCDWCLHPGHYYGGSMRYPFNIPFPKERTTES
FT                 VVEHAREAVRTQKRVFGVVNASPLINLKNFNIIDGFTPDYMHCFLAGVASQ
FT                 FTERILQHVTVPDIQYMDALLISIKAPHAIGRLSRPLSQRSNWKATEWENW
FT                 LLFYSIPVLNTVLTNRKIMQHWALLVESLSICLGTRITYSELNRANGMLYK
FT                 FVSEVEDMYSLTAMTYNVHQLLHLVKSVHNWGPLWAHSTFPFEAANHKLLT
FT                 AIHSAKGVVLQIIRYTNIQRTVQILENRLYPYCSKLVLDFCQQITSPLARK
FT                 TLKISCITYFGCGNIVPPNIALLFNVAKTTLIFSKMVLNGCLYATSEKINK
FT                 RSCNYYAQLTDETFIKILYFLVDTESKVESTVCEVIKTRPNKYANVVKEVT
FT                 NISEKICVPTSLIVKPCIFIDTKDGMYIIPVPNVISH*"
XX
SQ   Sequence 2611 BP; 920 A; 387 C; 421 G; 883 T; 0 other;
     aaataattga ataaatagaa tttttttata ggtcactgat actaatgatg agtctgatat        60
     attgagttat tcgagcgatg aagaactgct aaagatttta gaaggaaacg acgaagattc       120
     taacggtttt aacaagttgt ttaacgatac aaactttttt gaatctctta atttaactgt       180
     tgatagttct ccagcagaat tactgttgat gtctttgaag tattctgtgt caaataaatt       240
     atcagttaca ggaatattaa atttattaaa gtttgtaaat agattatgtg gtaagaatat       300
     tttaccagaa tcaaaatatc aatttgatca attatgcaag aatgaaaata ctttaactct       360
     tcacgcagta tgtctgactt gctcaatgta cataggtacg tttgaaaaat caaataaatc       420
     tgtcaactgt gagaattgta atagcttaat agatgtatct aatccttcga atgcgtgtta       480
     ctttgctata gtaaatccat cgaatgctgt tcgtgattac atagaaagtc acgaaaatta       540
     ttatgattat attgtgtccg aaagaattca cgaaccaaat gtcataaaag atatttatga       600
     tggggaatgt tataaaaatt ttctgaataa cttaaataca attgatcgac atgcgtacgc       660
     aacagcagtc ttcaatacag atggtgcacc agtttttgaa tcttcgaatg tatctatttg       720
     gcctatttat ataatgctaa atgaaattcc aattcataaa aggttaaaca gtactattgt       780
     tactggttta tggtttggca caagcaaacc agaaatgtca gtttttctcg atgcatttgt       840
     tgaaagcatg aatcatttat caaccatagg aatatcggct acgattaaaa atcaacatcg       900
     taaaattaaa ttgtttacat tgcttgcatg cgttgacaca gtcgctcgtg caccaatgaa       960
     tggtaccact ctatttaatg gaaagtatgg ctgtgattgg tgtttgcacc caggtcatta      1020
     ttatggtgga tccatgaggt atccatttaa tattccattt ccaaaagaaa gaactacaga      1080
     atcagttgtt gaacatgcaa gagaggcagt gcgtacgcaa aaacgtgttt ttggagttgt      1140
     aaacgcatca ccgcttataa atttaaaaaa ttttaatatt atagatggat ttactcctga      1200
     ttacatgcac tgctttttag ctggagtagc gtcccaattc acagaaagaa tacttcaaca      1260
     tgtaacagtt ccagacatac aatatatgga tgctttatta atttcaatca aagctcctca      1320
     tgcaatcgga agattatcga ggccattatc acagcgtagt aactggaaag ccacagaatg      1380
     ggagaattgg cttcttttct atagtatacc tgttttaaat acagtactaa caaacagaaa      1440
     aataatgcaa cattgggcgc tattagttga atctctatcg atttgcttgg gaacgagaat      1500
     cacatattct gaattaaata gagcgaatgg aatgttatat aagtttgttt cggaggttga      1560
     agacatgtat tctttaacgg cgatgacata taatgttcat caattgcttc atcttgtcaa      1620
     aagcgttcat aattggggac cattatgggc acactctact ttcccatttg aagcagcaaa      1680
     tcacaaacta ttaacagcga ttcattctgc gaaaggtgtt gttttacaaa tcataaggta      1740
     cacaaacata caacggacag tacaaatctt agaaaacagg ttatatccat attgctctaa      1800
     acttgtatta gatttttgtc aacaaatcac ttcaccgtta gctcgaaaaa ctttaaaaat      1860
     atcctgtatc acatattttg gatgtggaaa tattgtgcca ccaaatatag cattactttt      1920
     taatgtagca aaaactacat taatattttc aaaaatggtc ctaaatggtt gcttatatgc      1980
     tacatcagaa aaaattaata agcgttcgtg taattactat gctcaactga ctgatgaaac      2040
     tttcataaaa atactatatt ttttagttga cacagaaagt aaagtagaat caacagtatg      2100
     cgaagtcatt aaaacgcgac ctaacaaata tgcaaatgta gtgaaagaag ttacgaatat      2160
     ttcagaaaaa atttgcgtac ctactagttt aattgtaaaa ccttgtattt ttattgatac      2220
     gaaagatggg atgtatataa ttcctgtacc aaatgtaatt tcgcactaag ttcaatatgt      2280
     gattacaaat gtatttgtac tgtacaatga ttatttattt ttataattca tgtatatatt      2340
     ttaaataaat ctatatttat cttttaataa tgtgcatcac attaattatt taataaaatc      2400
     gtattgtaat gcaaacttgt ttatttcaat tccatttata acaagtaata acattataac      2460
     agattaataa tttaaaatgc aatttttttt taataatttt tcagaatatc atgtgattat      2520
     cacgtgataa attggttgaa aatatcacgc aattatcacg cgattatcac gtgattatca      2580
     cgtgataatc acgtgacttt tttcagtagg g                                     2611
//
ID   EnSpm-2_RPr repbase;    DNA;    INV; 1495 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA seqeunces: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm;
KW   EnSpm-2_RPr; HGT.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1495
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3227-3227 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 5'-end is truncated. 89% identical to Chapaev3-2_AC,
CC   suggesting a horizontal gene transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..1116
FT                 /product="EnSpm-2_RPr_1p"
FT                 /translation="MATVYRQLKAELEVCSPPQWKFIWFSPIGHSVRLSEE
FT                 CEDIKRVIDLLQYHMHQWIICVDLKMVCFLLGQQRGYTKYPCFLCMWDSRA
FT                 REKHWVQSNWPPRSDLKPGDPNILHQPLVDRKNIIFPPLHIKLGLMKQFVK
FT                 ALPIEGDCFKYLISAFPSLSFEKIKAGVFDGPQIRQLVKDEHFIGTMSEIQ
FT                 KNAWLAFKNIVKDFLGNTRAQNYAEIVQQLLESFKLLGCNMSIKLHFLHSH
FT                 LANFPENLGAVSDEQGERFHQDLKVMEARYQGRYDG"
XX
SQ   Sequence 1495 BP; 464 A; 258 C; 322 G; 451 T; 0 other;
     aacgatgaag attttgaaat tgaagatgat tccgttcgta agggatttga gcagcatgag        60
     ttgaatgatt tggtacgaga tttgggacta tccaaaaaag cttcagagct cttagcatca       120
     agactgcatg agaaaaactt gcttgaaaag ggagctaagg tatcctattt tcgatcaaga       180
     gaaagtgcgt ttctacaata ctttgaagtg atgatggatt tgtgtattgc cataacgtac       240
     atggtttaat ggagagttgg gaatttcagc ctataacgca actgaatggc gactgtttat       300
     cgacagctca aagcggagct tgaagtgtgt tctcctccac aatggaaatt tatttggttc       360
     agcccgatag gccattcagt tcgtttgagt gaagaatgtg aagacataaa gagagtcatt       420
     gatttgttgc aatatcacat gcaccaatgg atcatttgtg ttgaccttaa aatggtctgt       480
     ttccttcttg gccagcaacg cggatatacc aagtatccct gctttttgtg tatgtgggac       540
     agtagagctc gtgagaagca ttgggtgcag tcgaattggc cgccaagatc tgacctgaaa       600
     cctggtgatc caaacattct acatcagcca cttgtcgaca gaaagaacat tatatttcca       660
     cctctgcata taaaattggg tctcatgaag caattcgtta aagctttgcc aattgaagga       720
     gactgtttta agtatctcat ttcggcattt cctagcctgt catttgaaaa gataaaggcc       780
     ggtgtttttg atggtccaca gattcggcag cttgttaaag atgaacattt catcggaaca       840
     atgtcagaaa ttcaaaagaa tgcttggttg gcattcaaaa acattgttaa agactttctt       900
     ggaaatacac gagcacagaa ttacgccgaa attgtccagc aactcttgga gagcttcaaa       960
     ctgctaggtt gcaacatgag catcaaattg cattttttac atagccatct agctaacttc      1020
     ccggaaaatc ttggtgcagt cagtgatgag cagggtgagc gattccacca agatttgaag      1080
     gtcatggagg cacggtatca aggtagatat gatggctgac tattgttgga gcatcaagcg      1140
     agaatgtcca cagattaaac actccagaaa aagctataag cgaaaatttt taccttaata      1200
     gtaattaccg ttcgataaag aaacaactat ttgtatgatc acaatttaac ttgcagtaac      1260
     tatttaacta ttatagcctt tgtatgaata aaatgattct ttgtaaacag tatatttagt      1320
     aagcttttac tttattttcc tttatatgca caatttttat gacttttgag ggtatcctgt      1380
     agcttaaaaa gttgacgtga tagacgaaaa ctgcggttat ttttggattc agaggccaaa      1440
     agttagttga aaacaagtca cagatttaag acaacgaaat tgctgttccc cagtg           1495
//
ID   EnSpm-2_SIn repbase;    DNA;    INV; 6675 BP.
XX
AC   .
XX
DT   11-JUL-2012 (Rel. 19.02, Created)
DT   11-JUL-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   EnSpm-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm;
KW   nonautonomous; EnSpm-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-6675
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 386-386 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3620..6094
FT                 /product="EnSpm-2_SIn_1p"
FT                 /translation="IPVRNRQRWNKKVALTITEIDEAKNFTQSPNISYEDD
FT                 HLSSKSGSNIYIDEISNYENNHSDNLINADYEDNIAVLNNNNLLNYNAINL
FT                 RESLYINHNRHSLSTNLNESIFCNFNSNNNILFNGSSQTIDETVYNLINLY
FT                 VKHRMTKSNLKDMLIVINNMLPQPNFMPNTLHSLFSYVKNSVPHCIAIKHF
FT                 YCKKCILYKGVDTVEVQCKSCSTNENSYFFEIDIMEQIKCLFEYRNLASLL
FT                 KPFEKSHLNSESEIFSDITDGSEYKRINVRQNRGEYDLTLMLNTDGLSLTK
FT                 SSKSNCWPLMFQIMELPPHLREQFIIISGLWYDNKKPVMNTFLHPFCLKLL
FT                 KCFKDGINWLHPQTKVVYNTKIVVPLIIADAPARAQILNTCNFNGEYGCNI
FT                 CEIKTQKCLRIEGKKTVRIYPFIENRCTLRTNKRMIKHSQIAFKQNIDNIK
FT                 GIKGPTIISTLPFLDLGTCVIPEYMHSVLLGIVKQFLNIWLHKDGSWNIKK
FT                 YLNEMDNYLLQIKPPDTFSRLPRSLCLIYFYKASEYYNWLLYYSIPTLKNY
FT                 LPTQYFQHWLLLVMSIFILLKREIKLLDIEEAEYMLKIFVKQILDLYNDRE
FT                 LRYNVHQLLHLGICVKRWGPLWATSAFPFEDYNGKIASLSHATKNIGQEII
FT                 NNLSILDGLTILKNKITFHKKQTVFVECLNKNISDLLLTEQDKRFLQQNLV
FT                 GNYLIYGRANVKDETFTSEIYYRHNKTNSYTVQIISNSSDSAMYGTIRFFI
FT                 KANDTMYIVFRRFKIIHTKIFYHQELRKQVKHILPVEADNQYIMLNLMNIK
FT                 LMSKVIRIHDYICNTPNLLNKVM"
XX
SQ   Sequence 6675 BP; 2479 A; 845 C; 844 G; 2506 T; 1 other;
     cccgggaaaa aaaatttata tctgattgta tacaatcata tataatttgg tagatataat        60
     tatgtatgga ttttgacctg atctaattgc atataaatag ataaaattgt ttctgattgt       120
     atctaaatag atcacattat atatattttt atacgtgtac gtaattagat acaattatat       180
     atttttatac ataagaagat cagattttta atgagtttat tttggtaata aatatagaaa       240
     atcatatatt tttataaatg aaagattatg tatttaatat tttattagat tacataaata       300
     ttatattaca tagttacact gctaatatat aaaatttctt acaacaatat ttggttgggg       360
     gtgtatatct atgtaccgat atgcccacca cgcgaccaac tatacaccgc tcgatattga       420
     atcgcaaaga cacttgcttg gtgtctcaaa acaatttctt gaccaacgta atttaataaa       480
     aatgttgaac aatatatgtg atttgagata agaatttata tgtcaaaaag tttaagaagc       540
     ccaataaaat aataaaattt aattcttcat ttaatgtcga atatatattg tttatattag       600
     tagcgtatgt aactcgaaaa atgtaaaaaa aatgaatatg tattttaaag ttaataatag       660
     atgagaaagt ttaatttttt cactcaaaac ttgctagaga tttttctgaa taaaaatatg       720
     tctcttatta aaaaaaaaat aataataatt ccaattacta caattgaact ataatatata       780
     atcattttcg gtgccaacta tgtatttata attatttaaa atgacaatta tagctattaa       840
     ttcgatattt aataacaatc ttacaaatac aaaaacgaaa aaaagtttaa gtcaagacat       900
     taataaaaag taaatattta ataaagtatt atgtcattaa tatactgatt ttgtttgaat       960
     aaaagttatt aatattttaa ctaaaaagtt attaatattg aatatacata tggtgttttg      1020
     aaattcacga attaaaaaat ctcggaaaat taaataaaat agacatttga agattttttt      1080
     tcaagcagta tataacttta gagatataag gactttagag ttacatgagt caaatttgtg      1140
     agattaaatt gaatcgagtt tcttataaca tattcgaaat caaattgaat ctaatctaaa      1200
     atctttttgt ctaatcgaat caaattgaat ctttgattcg aatacaatta gaatttgaaa      1260
     caaattttct tctgaaatga ttcacgaatt tcaagacagt ctaatgtaat ttatacttaa      1320
     tatacagttt tagttagtaa tctaaaaaaa aggactgtga attgtattta taataaattc      1380
     aagtattacc agaaatttaa tattacacta ttactaaatt atattactaa ttgggattat      1440
     ttaattcatg gaaaaacaaa cgtaaatgtc ttgacttacg ttaaacaaga aaaataagaa      1500
     aagaagcaag aagaaatgag ttactttaca gctcatttct taactctctt tttatctcta      1560
     caattctttg tgttatagct cgatgtaact ctttctttgt ttgctggatc caaccatgct      1620
     ttatcccatg ctcaatagaa aaatctgaaa atgcaatata tatattatat atatgttatg      1680
     aaaatttttt gtaattttat taactaataa aaatatctat tacaaatatt ttttataaca      1740
     caaacatgtc tatttatcgt gattaaaatt aatataatat aaatattatt actcaccaac      1800
     tattgcatta atggcaaagg gatgtagaca tgtcattttt acacattgcc ggtctcttcc      1860
     ctgtgctcta gcagtttgtc cagtcagagt accgtttatt agtgcttctt tttaaatact      1920
     cctgttaaca gtctccttac aagttgcgat ggtctgtgtg catttcctat ggctgaataa      1980
     aacattgcat ttctgcaata aaagttgttc ttcaagtgta tcatctgtaa tcaaattttt      2040
     ttgtttaata atttgcagtg taactttgaa tttatcaatc tttggattta tattaataat      2100
     atgaaattaa aatgtttata aaataatgaa atgctattta gaatgtagta tttaccttag      2160
     gctcgaagtc ttttccgtac aattgaatgt ctgcatcttc taattcttct atttcatttt      2220
     cgtcctcaaa attttctaaa ttattttcaa tacttgttac agaatttttg atggagtttt      2280
     tatctggatt ttctacattt atttcaagat tattttcatc tgatgaattt aaatcgcaga      2340
     aatctttttc aatctttctc tcttttcaat cttttcttca aatactgaaa tatgaaatag      2400
     atattatcat tcacatattc tgttttctat agaaaaaata ttgatgcaag ttatatcatt      2460
     tacattatag aaattttagc aaacttactc gatctttctt ctaacttttt tctagtttga      2520
     tacagcattt cttttaattc ttcctttgtt ggactacttt tttggctatt actagcatta      2580
     tcagataact ctgaagttgg atatttatcc aataaatcaa aaactgcagc atttgatgtc      2640
     ctctgtattt tttttaaaac ctaagatttt aattgacaat ttataaatta taatataaat      2700
     attataagaa atatatttac atatatttaa ttgaaattat aatttacctt ttttgtatca      2760
     tttttctttt tagtaatatc tttagcagaa cttttaatta ctttagatgg tcctaattca      2820
     tttctttttc aaagagatac ttctgtttta ttaaatgatt cacttttctt tactttcttt      2880
     tcttttttag ctttttctaa tctaagcata tctaattgtt tttccatgta acatttatta      2940
     tctgcaataa tttttcttaa ttattagaaa ttgcacagaa caataaaatc actttctaac      3000
     ctataaaatt tatttattta caaaagcgtt atggaacatg caattaagtc atagcaattt      3060
     ctacataacg tataacaata atttatcttt acctgaatgc tccatcactt ttccagtgta      3120
     ttctttattc ttatacgtaa atatcacttc atcatctttc ttgatattgt cctcgtcata      3180
     gacaacgttc tcattttcca ctaaacagta ggaattatca ctatcacaat acaagagaaa      3240
     cattttcaac agattgcacg gaatatgttt aaaaagtcga aatagtctcg tacgccgtta      3300
     ttgctaaatg ctaaggctcg caagttctgt gtccacgtgc acgatcatgc acgatctgta      3360
     tccatgcact gtgtcgcgca tgcgagttat gcgacgatcg tcaattctcg tctgacgagc      3420
     agtggctaaa tgtaacacgc gcacacgcac ccaacaatag ttttctgata gaaaaaatga      3480
     cgaatgaaaa tatttcacga aaaaaatcat ataaactgtg ggaagaaaat ataaatgtcc      3540
     cggtgtgtat aaaaattatt tttatatctt ttatatatgc tacatgtaaa atataattaa      3600
     tttgttttta cgcaaataga ttcctgttag aaatcgtcaa cgatggaaca aaaaagttgc      3660
     acttacaatt actgaaatag atgaagcaaa aaattttaca caatctccaa atataagcta      3720
     tgaggatgat catttaagtt ctaaaagtgg tagtaatatt tatatagatg agatatctaa      3780
     ttatgaaaac aatcattctg ataatttaat aaatgcagat tacgaagaca atattgcggt      3840
     gttaaataat aacaatttgt taaattataa tgcaattaac ctacgggaat ctttatatat      3900
     aaatcataat aggcattctc tctctacaaa cttaaatgaa agtatatttt gtaattttaa      3960
     cagtaataat aatattttat ttaatggcag ttcccaaact attgatgaaa ccgtttataa      4020
     tttaataaat ctttatgtaa aacatagaat gacaaaatct aatttgaaag atatgttaat      4080
     agtcataaat aatatgcttc cccagccaaa ttttatgcca aatactttac attcattatt      4140
     ttcttatgtt aaaaatagtg ttcctcattg tattgctatt aaacattttt attgtaaaaa      4200
     atgtatatta tataaaggcg tagataccgt agaagtgcag tgtaaatcat gttcaacaaa      4260
     tgaaaattct tatttttttg agattgatat aatggaacaa attaaatgtc tttttgaata      4320
     tagaaactta gctagtttgt taaaaccatt tgaaaaaagt cacttaaata gcgaatctga      4380
     aattttttct gatataacag atggatccga atataaaaga attaatgtcc gtcaaaatag      4440
     aggagaatat gatctcacac taatgttaaa tacggatggc ttatctttaa ccaagagttc      4500
     aaaaagtaat tgttggcctc taatgtttca aattatggaa ttacctccac atctgagaga      4560
     acagtttatc attataagtg gattatggta cgataataaa aaaccagtaa tgaatacctt      4620
     tttgcatcct ttttgtttga aattactcaa atgttttaaa gatggaataa attggcttca      4680
     tcctcagaca aaagttgttt ataatacaaa aattgttgta ccattaataa tagctgacgc      4740
     gcctgcaagg gcacaaatat taaatacatg taatttcaac ggagagtatg gttgtaatat      4800
     ctgtgaaatt aaaacacaga aatgcttaag aattgaaggc aaaaaaactg ttcgtatcta      4860
     tccttttatt gaaaatagat gtacattgag aactaataaa agaatgatta aacatagtca      4920
     aatagcattt aaacaaaata ttgataatat taaaggtata aaaggaccaa ctattatttc      4980
     tacacttccg tttttagatc ttggaacttg tgtaattccg gaatatatgc attctgtatt      5040
     acttggtatt gtgaaacaat ttttaaatat atggttacat aaagatggat cttggaatat      5100
     aaagaaatat ttaaatgaaa tggataatta tttactacaa attaaacctc cagatacatt      5160
     tagtcgatta ccaagaagtc tttgtttaat ttatttttat aaagcttcgg aatattataa      5220
     ttggcttcta tattattcca tcccgacctt aaaaaattat ttgcctacac aatattttca      5280
     acattggctt ttgcttgtta tgtctatatt tattttacta aaacgcgaaa taaaattatt      5340
     agatattgag gaggcagaat acatgttaaa aatatttgta aagcaaattc tagatcttta      5400
     taatgataga gaacttagat ataatgtgca tcagttattg catcttggta tttgtgttaa      5460
     acgttggggt cctttatggg ctacttctgc ctttccattc gaagattata atggaaaaat      5520
     agcaagttta tcacatgcaa ccaagaatat cggtcaagaa attattaata atttatctat      5580
     acttgacgga ttgacaattt taaaaaataa aattactttt cataaaaagc aaacagtatt      5640
     cgttgaatgt ttgaataaaa atatttcaga tttgctactg acagagcaag ataaaaggtt      5700
     cttacaacaa aatttggttg gaaattattt aatttatgga agagcaaacg taaaagacga      5760
     gacatttact tccgaaattt attatagaca taataaaact aatagttata cggtacaaat      5820
     aataagcaat tcttctgatt ctgcaatgta tggcacgata agatttttta taaaagctaa      5880
     tgatacaatg tatattgttt ttcggcggtt taaaattatt catactaaaa tattttatca      5940
     tcaagaatta cggaaacaag tgaagcatat attgcctgta gaagcagata atcaatatat      6000
     tatgttaaat ttaatgaaca ttaagttaat gagtaaagtt ataagaatac atgattatat      6060
     ttgtaacacg ccaaatttat taaataaagt tatgtgaacg attaaattaa tatcgtataa      6120
     aaaataaaaa aatgtgtata aattataata gaaatattat taaatatgtt acattgaaat      6180
     atatatgtgt tcgcaaatgt atgtgaaggt acgcgtaatc atggcattca atttattaaa      6240
     cctttaatat ctcgaaaaaa ccattttatt atctatacct aaattattta tatagaattt      6300
     ggcagtttta tacatataat tttttgtata actccgaaaa ggattttaat ataattttgt      6360
     atattttgat atgaaatacc atatcgtaaa attgatacaa ttacatctaa taagacattt      6420
     ttctcggtcc caataatttt gcataatttg atatggagtt ataaatattt tgatataatt      6480
     acatctaata agatataatt tttttctcct gtaagattct caaaatattt ttatataatt      6540
     tgatatggag gtatatatat tttgatatca ttgtatataa ttaacaatat gcaaagatct      6600
     tattatatat aattatatgt aatatgatat aattgatacg ttgtatacaa tcagatatma      6660
     actttttttc ccggg                                                       6675
//
ID   EnSpm-3N1_DTa repbase;    DNA;    INV; 879 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-3N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-879
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4703-4703 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 879 BP; 307 A; 144 C; 150 G; 278 T; 0 other;
     cacagagaaa aaaacggaac aataccagat tgatattgtc tcctcaattt gtacatatca        60
     atttttccat ataaatgtaa tacgaattca taccaatatg atacgaaatc ataacaatta       120
     cccatgttga tatgaatccg taacatatta atatgaatac ttcaaagatt gatatgtttt       180
     tcatatcaaa tggggcatcg aaaagtcttc gaaaaaatag tatggctgta aagttgtatt       240
     tttgttgtat ttctggtata caatggtatt ataacgcttt atatgctgtg gtcacactta       300
     caagttgagc atgcttaaac gagctaattt tacattcaag tttagctaat atactcgcgt       360
     gtaacttgtc gcgatggccc aataggtaac gcatccgact ctgatgcgag aggaccccgg       420
     ttcaaaaccg gctaaggcag agaaagtaaa aagtttttaa ggcgcataat taacatttcc       480
     ttaacaatat taagaacaaa attgtggtaa aaagttaata tgataagatt actaataaaa       540
     aaaaaaagtt gtgttgtgtt gtgagcggga tttgaacccc gttcccccga gcacaaaata       600
     atatcaggac ctagcacctt ggcctctgag ccatgcccac attttttttt tcgtggcaga       660
     atgcttttct gagttagaga aaatacaata caaaattttg tagcaaaatt tgatatgtgc       720
     gcataacaat ctattatgaa aaataccaca ttcatatgtt cgaaaatacc aatttggtat       780
     gttcgaaaat atacttttgg tatgaccaca tatgggacca aaattgatat gaaaaaatac       840
     ccgaatgatg accatttttg gtattttttt ttctctgtg                              879
//
ID   EnSpm-3N1_RPr repbase;    DNA;    INV; 819 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA transposons: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-3N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-819
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3228-3228 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 819 BP; 261 A; 135 C; 162 G; 261 T; 0 other;
     cacaggtcta cagtgatttt gctgttttga gtttttgagt cattttgaag taatatgcat        60
     gtcctgatac caagtatgat acccgtttac ttgtatcaca taccattttt tttttagtca       120
     tagtcttaat tttttagtct tagtagcgtt attgcatact tcacactatc ttttattttt       180
     aatattgtaa cgaagttgac ctgaggagcc tggcaagcct ttatagatgt aaccaagaag       240
     tttttaggaa acaccaaaga tcctaactac gcaaaattag tagccacaat gcttgagaaa       300
     ttcagaattc tcggatgcaa catgagtctt aaggtgcact ttctattttc gcatttggat       360
     gtatttcctg agaatctggg ggcggtgagc gaggaacaag gcgaacgctt ccatcaggac       420
     atccgggaga tggaacgacg gtaccaagga cgatggagta tatcaatgat agcggattac       480
     tgctggacgc ttcaaagaga agactctgca gcaggtcata agaaaagatc actggaaggc       540
     aaacgaaaac gttattattg attaaataac attctagtga atcaacattg cgcatttcca       600
     agtaatacaa ccagcatttt aatcaaaact gtatcaacat ttgaaaagaa atgtgtattt       660
     tttgcaatta acattgaatt tttcattctc gatttgtaaa aaaacctgat gtgataggag       720
     aaaagggggg ttatttttga aaatggctgt actcaattgt atataatcac ttttcagaag       780
     taaaacagct ctcaaaaagt ttcattttgt agacctgtg                              819
//
ID   EnSpm-3_BTa repbase;    DNA;    INV; 19924 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-19924
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 522-522 (2018).
XX
DR   [1] (Consensus)
XX
CC   From a single locus. Mutiple insertions are removed. ~600-bp
CC   TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(9718..9506,7886..7647,7292..7007,3767..2209)
FT                 /product="EnSpm-3_BTa_2p"
FT                 /translation="MFLYFRVLQGASLQIRAPQCTRVQFLTLMPNAPKGNS
FT                 QSLRAPVDVCNLNSGQLWAMIPTSRRLHMSAAGLAVARSVAGAWNLVQHLT
FT                 ANSSAFEFSTVQCTINEGLILTPSIPPLRSVRWSDRRGNQCPGVSFIPIRH
FT                 SNSTCRQRVNGPMSFPLRVLVRYVTTGSSGQVPSQFIKDFKPPRFDKNKIY
FT                 EVFFSSIETDTPDLLSARAEKVFNIDELIEEAGTAQEKKQLENQPGYYYAK
FT                 IYAFKETQEEFLKFIGSKEGKEMEIKIQDDHKKETSNIPKKSSRGAAQKAE
FT                 IAAGSNFSIKRLVEDNELSRSKRVRRNSMNGYNELAEESDADEVSENEDSQ
FT                 ESHRIKDVSFYKLKYVKWKAEALKNVESKEAAELMSLEKDRTINHLKRDLQ
FT                 QYQKRLADKEQHISHLLSSLSHIAEANKSLSLRVPLHSDRSSIQSNVPSQT
FT                 PQTYPHTPVDNTPSALSDLTTPSNTETLNTSLSLVNSSFLSSAESSMSTRI
FT                 SSQSSSFNNVDVDKLNVTDNDRHYEEPITPARIPSVDVAPRPLTDILQTSC
FT                 ATSSSPVAKRYKTVSEDRKLACQCSSTGPNGDAKFMYSIIVHVYEPRILVY
FT                 QYVKNVHSKIPDDGEEIDNEGFQYLESLLKWRILEDEPGLDKSNKVEFMKR
FT                 INMLPFYIGIKRGGLRRSLQISDSSKGKGKTNVKPKGNKCSTSKTVNTSSG
FT                 ESDAPGNKNVLFEKKDPENVIRFATNNNVNRKVLGDISNKENEAEVGVKTH
FT                 EHVIVNQNDNLMVL*"
XX
SQ   Sequence 19924 BP; 6026 A; 3821 C; 4020 G; 5989 T; 68 other;
     ccctagtgga agtgaacctc atgcggcggg aggttcgcag gtggttaacc gtccgcagcg        60
     gggactaacc tcatgcaacc tcaagcaagc acccgtcgca tggagtcgca tggagttcac       120
     accctgttcc aggaaaagct gcatgaggtg acgggtacta cctcccgcga aacccaggaa       180
     cctcccgcca agctcccgcc aacctcccgc aagccctaat cacctcaagc aagggccagc       240
     aaccccatgc agctcactaa ttacactgcc cctgcacaca gtgggcagtt ccaggtcaaa       300
     ggaaggagga gttgagctta aaaatcaaat ttctttctca aagaagagga atttmctaaa       360
     aaattgagtc aaaattgctc taaaaattaa tgtggcactt gaatcatgtt aatccaagga       420
     tttcacccta aagctggtct catttctgcg tttaacacag ccagaagtca agaaaataaa       480
     cttctaaggc ataaatacat gtaatatact tatgtcaaaa atctgatgag ccgtgagatg       540
     catgccatct tatggaatcc agggctcatc tgaaaatggg catgtgcttt gggnnnnnnn       600
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt       660
     tttttttttt ttttggtttt taaagctttt taattttttt tttaaaattt ttgaggtttt       720
     tagtgacatt ccaagttata atggtaattt ggaaaccatt tgtatgaatg aaaaaaaaaa       780
     acatactaat gcgacaatgc tgctgagaat tttgaagcct ttccatttct ttggcttgga       840
     aaaattgttt ggcaaaaggc aaaccaaact taaattttag aaacgagata aatttggcaa       900
     agaatttggt aagaggtgac aggggagggc atctatgtac aaatgagaca aaacttgtga       960
     ggcagcctgc acttaaaaat gagggtgctt cctgctgcaa tctcctctct aaatacctga      1020
     aagagaactg agacacagaa atattacaag tagagcatat cacttaaaat tcgaacatgt      1080
     atgtgttcga atccacactc aaaatcaatc cacaggcacc tgctgtaaat atgcaaaaaa      1140
     ttagaaagaa attcacaaag ctttaaacta aaaagatcta ttgtctaact tccgatggct      1200
     gtccaatact gtccagaaaa acatatgggg aacctaggaa aggaaatgaa gatgtgaaaa      1260
     cattgaggta ttgatgctta acgaggtcag cttaatgatc aaaatacaaa gttcatactt      1320
     atcacttatc ttaaaagaat aactctacta tatactttaa ttctgaactt gcacagattc      1380
     taaggaaaat aacttgactt tttatcttaa gtactaaaaa ttgctattga ttataattgc      1440
     aatatatact taaatctagg taccacaaat gcctacaaat attcatgaca ctgaacattt      1500
     gtttaaatta tatttaactc acacactata gcactgatgt cactcattga aataaactat      1560
     tcttcacttt ctcgtccttc aattgcacta gaactgcact tttaaaatag aaacttatac      1620
     cgaattatcc acgaaaattt aaacttttaa ttgcactaga actgcacttt tagaataaag      1680
     gtagactgaa ctgttccacc aaaattaaca ctttttactg cactagagct gcacttttaa      1740
     aatagaaact tagaccgaaa ttttccacga aaattaaaac ttttaattgc actggaactg      1800
     cacttttaaa ataagaactt agacgataat tttccaagaa aattaacact ttaattgcac      1860
     tagaactgca cttttagaat aaaggtagac tgaactgttc caccaaaatt aacacttttt      1920
     actgcactag agctgcactt ttaaaataga aacttagacc gaaattttcc acgaaaatta      1980
     aaacttttaa ttgcactgga actgcacttt taaaataaaa acttagaccg caattttcca      2040
     cgaaaattaa cacttttaat tgcactagaa ctgcacattt aaaataaagg tatactgaac      2100
     tgttccacga aaattaacac ttctaattca ctttagataa tcacatacca cttcacttca      2160
     acttcactca catcctgaat tctttcacta caataaaaac aaatttcatt acagcaccat      2220
     tagattatca ttctgattta caattacatg ttcatgagtt ttaactccta cttctgcttc      2280
     attttcctta ttactaatat ctcctagaac ctttctgttt acattgttgt tggtcgcaaa      2340
     tctgattaca ttttcaggat ccttcttttc aaacaaaaca tttttattac ctggtgcatc      2400
     actttcacct gagctggtat tcactgtttt gctagtgcta cacttattcc cctttggttt      2460
     gacattggtt tttcctttac ctttactact atcactaatt tgtaaacttc tacggagacc      2520
     acctcttttg atacctatat aaaaaggaag catatttatc cgcttcataa actctacctt      2580
     attactttta tccagcccag gttcatcttc taaaatcctc catttcagta aactttctaa      2640
     gtattgaaac ccttcattat caatttcttc tccatcgtct ggtatttttg aatgcacatt      2700
     ctttacatac tgatatacta aaattctagg ttcatacaca tgaacaataa tactatacat      2760
     aaatttggca tcaccgtttg gtcctgttga agagcattga catgctaatt ttctgtcttc      2820
     tgagacagtc ttgtatcgct ttgcaactgg actggagctt gttgcacaag aggtttggag      2880
     aatatctgtc aatggacgcg gagcaacatc tactgagggg attctagcag gagtgatcgg      2940
     ctcctcataa tgcctgtcat tatctgttac attaagtttg tcgacatcta cattattaaa      3000
     tgagctactt tgggaggata ttctggtgct catggaagat tcagcactgc ttaggaaaga      3060
     tgagttaacc agggagagac tagtgtttag ggtttcagtg ttgctggggg tcgtgagatc      3120
     agagagggcg gaaggggtgt tgtcgacagg agtgtgaggg taggtttgag gggtttggct      3180
     tgggacattg gattggatgc tactacgatc agaatgtaag gggactctaa gggatagact      3240
     tttatttgcc tctgcaatat gacttaggct acttagcaga tggctaatat gttgctcttt      3300
     gtcagcaagc cttttttggt attgctgcag atctctcttg agatgattaa tcgtcctgtc      3360
     tttttcaaga gacataagct cagcagcttc cttagattct acatttttta aggcttctgc      3420
     cttccacttg acatacttaa gcttataaaa tgacacatcc ttaattctat gactctcctg      3480
     agagtcctca ttttcactga cctcgtcagc atcactttcc tcagctaatt cattgtaccc      3540
     attcatactg tttcgcctta ctcttttgga tcgtgacaac tcattatcct ccaccagtct      3600
     ctttattgaa aagtttgagc cagccgcaat ttccgccttc tgagctgctc ctctgctaga      3660
     cttctttgga atgttacttg tctccttctt atggtcatct tgtattttta tctccatttc      3720
     ctttccttcc ttgcttccaa tgaacttcag aaattcttcc tgggtttctg aaattcacaa      3780
     caacaaattg ccttaatcag aagcatgaac acaagagcca gaccataaat gatgagtgtc      3840
     tagactcgca gtaaggggac tgagggctaa aaagatcaga agtagacaat catcattcgt      3900
     ggacagcacc cacttcatct atttgagctc cattgcttac ttaattcaat ttgggctgac      3960
     actgcaaagc taaaataatc atacatcttc attgaaggag caagtgaaaa actcagtttc      4020
     atattgcttt aagtacagtc ctctcttcat aaatacttta actaattcct gatatttaaa      4080
     aatttcaagc cactcactcg ggaaatttca gaaccccccc cccccaaaan aaaaatggtg      4140
     ccgagtgttt caaagaaaaa atcagttcca cttggttcac cgactattgc agtgctaagt      4200
     agcagaaaaa gtttcataca ggacttagag atatcacaga aatttacgca gaaataatga      4260
     catgacaggt ttgaaaactc gataagtgtg tatcaagaat ctgcattgaa acagaccatg      4320
     atactatact ttgtagtctg attgttggca tttaatttag ttttgcatca gtctcaatta      4380
     atcctgtgtc tgagagtgaa gagcctagcc ctggtgacac tattcatact ttcatcaata      4440
     tctcaagatg acacagccag aataaaccaa aagtgataca ataatcagga catcaatatt      4500
     tggcagacca ccaaaaacaa ttgaaaatgg actcatgata cccacattat tcctacttta      4560
     tcctcacttg ggacctacag ctggttatct ttgtatcatc catactgtta tcaaggctga      4620
     agtgtgatga aaatttcgca tgatttctac ttattgttaa gggatagtcc tcattcatcc      4680
     cttgctgccg ctataaggtt gcaatttggc tcacatcatt tgaatttcaa atgtctccag      4740
     aacaacaata aacttcccca aaatttgcct taagcgatgt ccatgatttg ccgactaaag      4800
     taccacaagt taaataaccc atatattgga ctgacatttt ctccttatag ttctccacct      4860
     ccataaattg aatatatacc tctgtatgca caccgaggca aacttatcaa tcagaaatat      4920
     tttaatatcc atgacaattg atgagaaatg cttgcctttc taaaatacag tgagtactgt      4980
     tgaagtctta gaagactacc gaatcaagat ttaagggaga gtatttagga attgtaatgt      5040
     tagtcggagg caagttgaaa tcatcttaag atacgctttt gaactgcaat tctccatagc      5100
     agacttgtaa gcgccctgta cctaagtaca caaaaaaact tgattccttc atgttcaacg      5160
     cactcatatt ttgaaagtac acttttagat ctctctctct tcattaagag gaaaccttcc      5220
     aactgttaat cgcagaagag acttacagac aaaagcatca aattcatttg cagcttgctt      5280
     aggagcaaca gcatctgatc atgtgtggat aacctcaaag tctgcgtgtt acgttcaccg      5340
     acaccataac aatattaggc aagcgtagaa tacatttgca cacttcaatg aacgttcagt      5400
     tccaaaccat tcgtctaata attaaaacta gcttatcaat ccattataca ttcgacaaga      5460
     ttaaacatta cactcctccg acatacgttg tctctgctcg cgaggctcac tgctagcaga      5520
     ttcctctcaa ggtcgaccta gacgcgtcat atttgtttac ttcgcaaaat tgctctgatg      5580
     ccaaatcagg ggaaataatt gctcccacaa aaagccacgt tcattgcatc gacagcaact      5640
     ttttcataaa cggcatattg tgattatttc tccgaaatat taaagctaaa tttttccacc      5700
     tactatttat accggcttcg cgataattac ttcaatctta agtaagtctc atgtaaacag      5760
     gaaatttggc atttacacat caggagtagg tcactgaacc aagcttccag ctatggattg      5820
     ccagattgtc attaaatatt agaagcccat tcgcgaatcg tagtgttcat cagaaacatg      5880
     aagctgaaat tgaattattt tcctctccct ctgccgttat aaactcgcca cgcaggccac      5940
     tatcctacca ccaaaaaata aagttcctaa tgctctcttc ggacccctct caaccatcca      6000
     atgttggctt gaggaggcat attcatacat gtaaaggagt aagacaaagt tgtaccgtgg      6060
     catcacttct aaaccgatga aggggggggg ggtcgtccag aaagaaaatt tttttttaaa      6120
     aaaaggggag gcttattagc gcatcggttc agtgaaaaaa tatttttgtt actttgaccg      6180
     ttttccaagg gattttactg ttaaaggccc gaacacccta aatataagtc tatactcaca      6240
     tcccggaatc ccttcaggcg atgataacta acgctgaaaa taatttctgc gcctcccctt      6300
     cccccgcgac tccttaaaat gccacaaacg caaatgaggc cggagccgaa ttatttgcag      6360
     gtataactcc ttactccctc atcataagac tctaaaaatc agaggttaaa atttttgtgt      6420
     gccagccgaa agtcagtcaa agaaataagt agcgcggtgg gaatctctaa aaattcaatg      6480
     aaaatcgtct tttcccatat acttcctcct acgagatcaa aaatatctcc ctcatttccc      6540
     atcttaatct acaacagtaa gagtcgcttc acattagagc cccaattttt aggctatacc      6600
     cgcctacgtt tgtggaaaaa ttcggagaga atcactgaat attactttgg agttgttcgt      6660
     ttcaacctcg ctcattaatg aagcatgggg gaaatgataa tagagatatt agagaaattc      6720
     cgttgtcctt ctcagggtga taaggtatga aatagctttg agaaaaatat tgcaaaatca      6780
     cgattttttt ataaatataa aaaaaccgtt taatgagatt tatggaggag cagtgggcaa      6840
     aaggccttga aaaaaaagga gtaaatagtg ggtacaaagg gcagcacacg aatttgccta      6900
     cagacattcg ctttctctga aataataaat agaaatggag aaggtaggat aggagagcca      6960
     cagcagttgg aagaagaaaa aaaaatttta attcacagag actcaccctt aaaagcgtaa      7020
     atcttggcgt agtaatatcc gggctgattc tccaactgct tcttttcctg ggctgttcct      7080
     gcttcctcta tcaattcatc gatgttaaac actttttcag ctcgagcact gagcaaatct      7140
     ggggtgtccg tttcgatgct actaaagaaa acttcataaa ttttgttctt atcaaaacgg      7200
     ggaggtttga aatctttaat gaactgagag ggtacttgtc cacttgaacc ggttgtaaca      7260
     taacggacca aaacgcgaag tgggaacgac atcttaagta agaaatttaa attgaaggaa      7320
     aaacaataag ccgacaatgt tcgggataaa attaaattaa gcaaaaaaat taatgaaacc      7380
     agacgcacga cgctttgaaa aaaacgattt taagatcgaa ctagagacac cacgacactt      7440
     tgaaaaaagc gattttacac gaccgacaag agacacgaga ggataaaatt aaattaagca      7500
     aaaaaattaa tgaaaccaga cgcacgacgt tttgaaaaaa acgattttaa gatcgaacta      7560
     gagacaccac gacactttga aaaaagcgat tttacacgac cgacaagaga cacgagagga      7620
     ccgacgacgc gcgcggatag tcagaccgga ccgttgaccc tttggcgaca ggtagagttg      7680
     gaatgacgaa tagggatgaa actgacgcca gggcactgat tacctctccg atcagaccaa      7740
     cgcacactcc ggaggggtgg gatggagggg gttaggatca gcccttcgtt gattgtacac      7800
     tgtacagtgc taaattcaaa tgctgaagaa ttagctgtca ggtgctgcac taagttccag      7860
     gcacctgcta cacttcttgc gactgccttt atgacacatt aataataaat taatcataaa      7920
     tcaaaattag tgtggaaagg ccccctaaat gcgcacctac ttgttatcgt atgacagtta      7980
     ggagtagcag tttctacttt ttcctttaaa caaattgttc atattcttag attagatttt      8040
     agagaaaaaa atgccccagt tttacgtgag tttatagctc caagcccttg cgcgataaag      8100
     gcatgacgga catgcttttt ctgttccttc aattttttgc agctacgtgc agctttttaa      8160
     aaagaatgga catagccgaa gtgcaaaacc aggcatcttc attgtgatgt ttcaaaattt      8220
     ctgttcctaa tttatttttt cgtcaaaaaa caagtgaagt tttttgcaag aaatttttat      8280
     ataatattct gctatcagat aataaaaatc aaagaagttc ccaagaaatt cagttataga      8340
     aaaaatgaag tgatgtagtt ttttaaagta atgatgcagt acgacgggaa gtctgaaaca      8400
     tgccatgagc gagactagta cggggtgggg ggggggcatt cccctcgcag aaattagcag      8460
     aatagcccct cctaagaaat gtgatcgact ttcccccaaa aatggggaac attttcttgc      8520
     cttttaagtc gtcatccaat gaattcgttg gttacaacag atcaacatta ttcctgagac      8580
     tattgaagtc agtgggtcat caggttgccc tgacgttcgt gtgtccttga accggcgggt      8640
     cggtcagtca ccttaaaata tttgtggacc ttggtactta ttatcttaga gggttgatga      8700
     ccggtatatt ttctaccatg atgtcagtgg gtcatcgggt tgccctgacg tttgtgtgtc      8760
     cttgaaccgg cgggtcggtc agtcacctta aaatatttat tgacctaggg aactattatc      8820
     ttaaagggtc atcagaccgg tatattatct accatgatgt cagtgggtca ttacatcagt      8880
     tggtcgatcg gttagtcaga tgcatactac ctggtctcat gcagttcagt gggtcatcag      8940
     gtcgatctat ccatcgtaac ttcggtgggt cattaggtca atgaaaggct ccgtattctc      9000
     ccgtaaaaaa gcgaagagga ctagcagatt ttaggagtga aaggcgcatt atcacttccg      9060
     cattctggag gtattatctt gaaaattgaa attgcattcg agcaatagtt caattgtaag      9120
     ccacgcaaac agcaggtacc tggtacaccc tctccgaggg ccgtggagtc ctatgggtaa      9180
     gtggagcgat tgcccaaggc gctaccgacg agtgggcggg cgccgaaaag tcggaaatga      9240
     gaaaagacgg cagaaaacga aaaaagaaaa aaaggcgaga gaaaaatagg gatacggcag      9300
     atagaagaaa aggaggacca ggaatagtga gagtatgtag atcagagacc aaaacggaaa      9360
     aaacaattcg tgaaaattat gctacctcct ctgaaaaaat ttgattttgg gggagtaaag      9420
     cgtggatcaa ataaaatcgc ctttatggat gcttagggac ggaaaattgc acccggcatt      9480
     taagggtgct ttcaagcgca aaaaccagcc ctgcggcgct catatgcaag cgtcgagaag      9540
     taggtatcat agcccacagc tggcctgagt taaggttaca aacgtcaacg ggtgccctga      9600
     gggactgaga attgcccttg ggagcgttgg gcataagggt caagaattgc actctggtgc      9660
     actgaggcgc ccttatttgc agagaggcgc cctgaagtac cctgaagtac aaaaacatgc      9720
     tctgcagaac ttcaagaggc tggaaattct tgtaatttgt accaaattcg tttcaaaaat      9780
     ttgttctgat aaatgtgtta ttcagtgtct ttgatgctaa ttaatactct ccggaatttt      9840
     gtttctccaa aatatttatt tcccttcgct gttaatcaga aattcaaaaa caatgccttg      9900
     ttttctcagt tgttgaatta cagttgttct accatagtta aataccaagt gcgacccgcg      9960
     gaataggtat ttttgtaact tcatttctct tctttttttt aaaaaaaaag taagaaggaa     10020
     gaaaaccagc gaacgaaaag gaaatagaaa ttttacagtc ttattaatat ataccgggtt     10080
     gaaacgcgtg gttagattgc tctcataaaa ttcaaaattt tctctagacc ctccccaatc     10140
     tcaaatgtct caaatcaaaa cgaaagtgtg tacaataatt gcgtattagc atcacttctt     10200
     agcagattgg atattttatt tccttcccct ttttaaattg gtaggaagaa tagaagcgat     10260
     cgaacaaagc tcggggtcta ggaaaagtaa gaaaggcgga atatctctaa ttacgttttc     10320
     aggagaaaag cacataatcg cgtatttgcg ctcagactaa gtagaagtga attagacaag     10380
     atgactagag gcgaagacgg ttttcggggt tagccggggt gctgtagcac cactcacagg     10440
     cccccggcct cataggcccc tgagacacat ttccccagtt aattttatca attttttttc     10500
     ttctctccaa ataatatgag gaaatcattt tgaggtccct ggagtattaa agacgttaga     10560
     ggactgaaga ggtcccgagg gtaggatttc gaaggtcacg ggccatataa gttcagaatt     10620
     tagggcacgt aatggcgttt tgtgagcata tgagatatga gacagaaatt ttaatggatt     10680
     tcacgaagga ggagtacctc ctgcggctct tcaaaaactg catctgctca aagcgcccga     10740
     tagcccttaa atcagtattt tatgatctct aggactagcc tgagggcatc tgggaccctt     10800
     ttttttatcg aaaacgtcca acgccttcat tgcacgaggt atgcaacccg aaaaaagcgg     10860
     gtcctctcac ccgctatata gcactccagg atcctagctc taatccggtc ctgtcattga     10920
     ggatacgcat gctcttggga ttttactacg tagattggaa gttgcaagta ttcagaaagt     10980
     ggtaaaagaa aattacaaat acctaaaaag aaaatagaaa aatgaataga agaggaaaga     11040
     ttttattccg aagaaaaata cattttagaa taataaatag ataaataaaa cataaactcg     11100
     gcaacatggc atagcgttgc tcacaacttc cctggggaac gccgaacgca agcggcagtg     11160
     actcataatt tagtgcgcgc accttatgca agtacctacc tataggccac ctcattgtac     11220
     cttttattgg tgttggattc gggtacggtg ccttggcgac gctctgccgc gccagcgcgt     11280
     cgccgccgcc gcgccgggcc cagaaaataa gccgaagtag tcgaacgtaa tcaaaaaggc     11340
     gatgacataa ggcctctgag cttattaaca gttcctatgg atgagccagt aggcttgctg     11400
     ttttcgtgac ttacgtcgtt ttaaaaatag cgtgtcactt aagggtcgtt ccacatgaca     11460
     tcatacagcg actgatgctc gaaaaatccc atttttttta ggtagatagt ttactaagaa     11520
     gggagcccgc tgactgatcc gaccccggga cccaccgatg gttgcggggg gcctgaaaac     11580
     gacacgcctc cttcctgcga tttttaggcg gtttggcaac caccgtcaaa atagagactc     11640
     tggtttcgtc gccccttgga cgtaaaggca cgtgaggcgt acattaattt ccacgtcagc     11700
     gctgttttaa gcacacagga atccatgctc tccggggctc atgcaaaaat taaggaacgc     11760
     ccttataata tgcgtcagag agtcagagag gcgacgattt gcgaagagca cgtcccgggc     11820
     gatccggcaa gggtgggatc gagcatgagt cagcaagccg gcgtcaacgg gggattttcg     11880
     gcgccgtcgc cgtgcgccgc gcacactggt cccgaaatgg cgagagggga aagcgtaaaa     11940
     acctaggact taatgagctt cgtgcaccct cctactactg acaaatttcc agcctctgga     12000
     gacgaatgat tattgctttg gaaattagac tccgatctac tgcgactccg tcaagttcgt     12060
     tttggatttc ttctgctttg tgacctctct gctttcgtgt tgactggcat tccactgtgc     12120
     ggcactggga ccacgctgct ttgctgataa gaagcaacca atctcaacat tctcaacagc     12180
     tttaacctca aattgtgtaa ttgtgagtaa ataaacattc tctacttctc tgttgctggc     12240
     catatgtcgt gttaattgtt tgcgtgactg tttctttctc gttttatttt tgacttagat     12300
     gtcgctcaaa tttgaataca tgtgttcgtg atcgggatta cacagaagtc caatttcccg     12360
     tgtagaagag taacttttgt cctgaataga aatcgaattc gaacgtgatt caacaggtga     12420
     tttcgtctcc tgaagttttc gctctttttg aaggagacat ggcctcctcc aagcgaagaa     12480
     aatgtttaag aacgattgaa acgagcgaat ctacttttgc ggataataat tttcgtgttg     12540
     tcgcgtcgga tactcctcag gaaggtacca gtaatgaggc aagttacttt gattttttgg     12600
     aaggatcaga attttcaaca tgtgacagcg acgagggttg ctctgattac gattttcccc     12660
     ttttctttga ttatgaatca gaagggtgtg agcccatgga ggttgatgtt aatcgagtgt     12720
     gtagtagtcg tgccgttcct ttcaatgacg agttgtataa aaaccgcaaa ttgcatgagc     12780
     cactttaccc ctcttcaacc atttctaaat ttgacgccac catcatggca atgactttct     12840
     ccattcgaca caagttgacg tatgttgcaa ttgaggacct aatgaagttg atcaatggtt     12900
     tatttgggaa agaagtcatg tctgcatcca aattcaagtg taacagtttg ttttacaaga     12960
     aaggggattt tgagtatcac ttttactgtt caaaatgtaa gacttacata ggaaagttaa     13020
     atgagtgtaa agaaattgaa aagtgtgtgc gagatggttg cagtcaacct tttagtatcc     13080
     ggaacaaaaa taggggttgt tactttttga tgcttcccat ggaaccccag cttcgaaatt     13140
     tatttgagga accaggcatt caacagtatt ttatgaatgt ctcagaaaga attgaggatg     13200
     atcaggtcat ttcggatatt tatgatggtg ctatttacaa gaagttggtg gcggatggtg     13260
     tcatcaatcc caaaactgat gccaccataa ctacgagttg tgatgcatca caagttttca     13320
     aatcaggcaa gaactcagtg acaccaattc agtttagatt aaatgagcta gtcccttcgg     13380
     aaaggttagc agctaatcgc ttaatgacag caggtctgtg gtttggtagg gaggagccga     13440
     taatgagtac gttcttcact ccttttatca gagaggcctc aaaattggca acagatggag     13500
     taatttggtt tgacgaatcg acaaaaaaac ctaagtgcac aaaagtattt acgataggtt     13560
     gcgtaacaga ttcgattggc cggcctaaag tccaaaatgt gaaacagttc aatggtaatt     13620
     ttggctgtcc ttattgttta aaccctggtg ttaatttaaa ggacggtgag gaagagacaa     13680
     aacataaaaa caatcacaag tatctgaaag gcgtgtaccc tgatcgttca aattcttcga     13740
     tgcgattaga tatggcgctt gctctgaaat caggcaagga agtcaatggt gttaagggcc     13800
     ctacaccttt ttataaatta gattattttg atgtttgttt tggatttcct ctggactgga     13860
     tgcattcttg cacaataggg atctgtaagt ttatgtttag cctgtggttt actaagagtg     13920
     gcagaagtaa agagccatat catgtaagta aaatcaagca aatgaaaatc gatggaagat     13980
     ttcgcaacat taaacctccg tcaagtatat ctagacttcc aggttcattt tttcatcatc     14040
     cagattggaa ggctaatgag tggaggtctt tcttgtttta ttatttctat ccatgcttga     14100
     atggtattct cccagaaaaa tatctgagtc atttttcttt gtttgctgct gctctttata     14160
     ttttattgca agagagcatt tctaaagatg aacttctgag agccgatcgt ttccttaggg     14220
     aatttgtcga tcaatttgca agcctgtact ctgaagatga catgcgattc aatgtgcatg     14280
     ctgctcttca tttgacgaaa acagtagaaa tgtgcgggcc tttatggaca acctctgctt     14340
     ttcaatttga ggcaggccaa ggaggtttgg ttgcgctagt gaacggaaca atttatgttg     14400
     ttgatgaaat ggctctgaaa atacttgtcc atacaaatgt gatgttatgt ctgacaggaa     14460
     attttgttca aagcagggaa gcttttgatt attgtaattc attgatgact ttcagtcgaa     14520
     gtaagaatag ttcagctcat ggaggagcca cagtattagg caactttaaa gaagttcccc     14580
     tgaatgaaac tcagaagtta gctttggtag gaagtggaat agaaggagtt gaaatggtca     14640
     agtcatgtga aaaaattatt ttcaagaaga tgaagataga gccctatgga gtcaatagga     14700
     aagaaacaaa gtttgacgac tcgcttgttc aattgaagga tggccactat tataaagttg     14760
     aaattttctt cttgaaccca tttgattcaa attcactttt aatgcttgga aagaaaatga     14820
     aattacagaa tccatctaac atttgtgtag gatgtgtgcc aattcatgtc aaaatatgtg     14880
     agctttatcc atttgaaaca ttgtcaattc atgatgttaa ggaaattgtt cgagttagta     14940
     ttctgatgaa aggagagcca tattattata tcactgattt cccgaacagg cttgaaaaag     15000
     actaattttt tatattgtgt tggttggcat ctgctgtcag gtacttgcag aaagattcga     15060
     tgtggttgtg tcatgatatc atgggttttt catacaaagt tcttgtctag tgtaaatatt     15120
     tcttttccct acttgaacac aagtggattc tccggaaaat gtggtaacca gcatgaacct     15180
     tttcatcgca aagaacgaag ttaaaggcct atactaccaa tcttctgagc ccacattgca     15240
     acattagtag tagtttgaag cgtccgtaac agctgttttg atcaaaatgg tttttgtacc     15300
     ccgggggggg ggggggtgtc gaatggaccg cgcttaacag aaaggaacca aggcacatca     15360
     ggtaccgctg aatgctactg ggcgaattta atgataagtc tgtatcctaa gcaagtctat     15420
     gattgagtta atgtttcatt atcattgaca atgagatcct aatgacatca tacagactgg     15480
     tcaggcaagt ggtaagtcag tatgatctca ttatgatatc attttttcat tttgcgatca     15540
     tgttcaatga agcattgacc aggtgatagt gatccacaat tatgatgata tttacagttg     15600
     ggtattaaaa aaaattgtaa cagagaaatt ccatgggcac ctatgtaagt atccttgtct     15660
     caaactactt aagttgcagt ccttaaatta ctttttaagt taaatctaat atctagttat     15720
     ttcttgttcc ccagttccaa atcaagatgg tctatttcat tggtgacagc caaacagtca     15780
     ggatgttgaa tagccaagtc tttccctttc ccatagttag tttggccaag agcggtgctt     15840
     cagcatctgc agcccttgaa atgttaaaga atcatactgc aaatcactct attccggaga     15900
     actccacttg tgttgtgtgg gtaggcacaa acaatgctag aaaggacagg tataatttta     15960
     agtatcattt taagctatta ttgaaggagg tacgtaaaca ctttgtttgc atttatattt     16020
     gtaggattcc tcctattcca attattcaca gtgaagtaaa ttcgatcatc gaagaatgga     16080
     actattttat ctcaaagtgt tccttaagaa caaataaatt tagtgttagt gtcctaagta     16140
     cctatctgcc attcatagat gtaaatggca atccattagt ggaatttttt gaagccacat     16200
     actttgatgg cagagtggac ttagtgcatt taaacagtag cggcctagaa aaagtgcgtg     16260
     acgaaatagt cttggcatta gtagattatt aagtattaat tccctcatat atttaaagtc     16320
     acaatttaag ttctcatgta ccaaaattaa agtaggtata aactttaata aaaaagaata     16380
     aaaaaataaa aaaaaaaaat aaaaaaataa aaaaaaaaaa aattctaatt cttcactatt     16440
     aatttctcat tattttcaat tttttttttt cagatttagg tttggctcat ttatgcagga     16500
     atgtcttttt taattttttt ttttcaggtt tctgtcagtc gtctgcataa ctcaccgagg     16560
     ggatggttat ggttcagcca tctcgagtta tgtagtggct gattttagtt gtatttaagg     16620
     tgtttttgta gtgtgctgtg ttttaactca acttatcttt tcttttccag atttcaggaa     16680
     ttaggtagtg gtaggcgtaa gtcgtaattt aggtgtgctg cagcttttgt tccttgtttg     16740
     tcatttactt aacattgttt tctagtaagt ttgtttcagg cacgtgtgcg tgaggagcat     16800
     ggaagaagag gagggttttt tcagtgggta gcaatcccac actgcccgat cacacaaccc     16860
     tggactgata tgatcgggcg ccttctgaag ggttttcccc gccgtaaaaa aagaaaacaa     16920
     aaaaaaaggg caaacaaagc aggtaatgtc tccattattt caacttcaaa accctgatag     16980
     aaaataaaat cattaatttc taagcagttg aagcacgtat ttcaatttga ctgaaatttg     17040
     gcaacgaaga gctactgttt ccagcctgta cacatagagg aaccagtgac acttacgttg     17100
     tctctgaaat gagccagatg tggtagctcc tcattgccaa atgaagtcca agtgaaatcg     17160
     tggcggtaat gcaccattta gacggtataa catttgaaac aaattgaacc tacctgtacc     17220
     atcagtgatt gcaggtgaaa atacttccag gtggattcca ttcatgtttg agcggtttcc     17280
     tgttgccaat tgtagcgctg tgaaatcaga atatttttgc taaaccaaga aattgcactg     17340
     agtgcaaaaa aatttcaaaa actcaaattt atgaaggttt ttctaccatt gttgttcagt     17400
     tgtagtatga aaaatttttg tgcatacata cctgtgacta ttcgttcagt aatctggttc     17460
     caaagtttgt ccgtttcagg ctttcagaag cagggattga gcagctgtgt agcacaatgg     17520
     agtagagagt gatgataaag gcaaatctcc aacatagatt gatgcccaag gaggcccatc     17580
     aagccggcag gagagaggaa ggaagaacga ggagaaaagc tggaaaaaaa ggtgattaca     17640
     atttcttcat aacaaccccc cccccacccc ccccccacca ttgaggactc ttgagctcat     17700
     agactgtagt ctttttctga gagttctcaa aaagcaagta gcaactctgg ttgtagaatg     17760
     catgccaaaa caaagaaaat gtaaactgtg caataaattt ctcaaggagc aaatgtacat     17820
     tatgatgctg aatttttgga tgaatctgag actgtgggtg gggggggggg ctagagggaa     17880
     atttcgcaac tagttgtgca gttggactga ttctagttca aggtgttcaa ttcaggagtc     17940
     agaaattgaa gcctcttaag aattaaattt ttagattgaa actaatttct tccgttgatg     18000
     tgagtttttt tctgagctgc cagaatatta taacagattg atgaagcaag cagcaggaat     18060
     aagtagtctt gaaattttac actccattga agtttgggtc tgatgagttg ccaaattttc     18120
     tcatgtgttt tattcttgtg tcattgattt tttttttttt tttttttttt tttttttttt     18180
     tttttttttt tttttttttt tttttttttt ttttttttta attttatttt attttacttg     18240
     aattttatat aatttcattt aaactgaccc tattaaagaa agataagtga aagtattgaa     18300
     atatgtagac tgttttcctg aaaacaatga gaacatgcac ctaatagtgg ctgatcctat     18360
     gttgccgaat ttttttgaaa agttggtgtg aaaaatactg aaactgagcc ttgcgaatat     18420
     atatttcatc attatttttc tcccatggaa aagaaaactc tgggaggctc atattgtatg     18480
     ttgtatgatc tgatagattc tcccaaaatt accgcatttt ctaggtgaaa agtgatccag     18540
     tgtttgacag aattgcaagt ctgagaaggt ggttgctgat ccctgaaaat gccctgtttt     18600
     gacaccaagt gatgtatgca gtaaagaatg aaaattatct ggaggttcgt ttgttgaaaa     18660
     ggtacagata ctatacaatt cttggcatgc tttagggggg ggggggggga gtgtatcgta     18720
     tgagggtaaa atgttggtta atggtcgctt acaaagcccg gtccaagtgg agtgaaagtg     18780
     aaagtctcct cacgccgagc ggtgccggcc ccggtaactc ggcggcgcct tcaaatgacc     18840
     gtgatgcatc aaatggtaca ccgcccatta gattccttta atttgattcc tatattgatc     18900
     ctggctcttt attcgaccca tcaaccaatt ttctcctctc atattatacc agattgatag     18960
     actgtgaagg agtttcgact taaaaatcaa gtttctttct gattaagagg aatgttatgt     19020
     agtcatcgca ctttttgtcc gtggaggcct tctgatgatc aaggctggaa tgatgttatt     19080
     tatacaattg aataattctg tttattcttc ttttggagat catttgttga ctcacggatc     19140
     catattctta tgaaggcatc gtgttcattt taagatgagc cctgggctcc atatgaacac     19200
     attcatttca aggctcatcg gaaatgttga cttcctcsct ctattaaaat atggattcat     19260
     gagtggacaa atactgtcaa aagagaatta aataggactt ttaaaaataa taataaaaaa     19320
     aaaaaaaaca gcccaaagca catgcccatt ttcagatgag ccctggattc cataagatgg     19380
     catgcatctc acggctcatc agatttttga cataagtata ttacatgtat ttatgcctta     19440
     gaagtttatt ttcttgactt ctggctgtgt taaacgcaga aatgagacca gctttagggt     19500
     gaaatccttg gattaacatg attcaagtgc cacattaatt tttagagcaa ttttgactca     19560
     attttttagt aaattcctct tctttgagaa agaaatttga tttttaagct caactcctcc     19620
     ttcctttgac ctggaactgc ccactgtgtg caggggcagt gtaattagtg agctgcatgg     19680
     ggttgctggc ccttgcttga ggtgattagg gcttgcggga ggttggcggg agcttggcgg     19740
     gaggttcctg ggtttcgcgg gaggtagtac ccgtcacctc atgcagcttt tcctggaaca     19800
     gggtgtgaac tccatgcgac tccatgcgac gggtgcttgc ttgaggttgc atgaggttag     19860
     tccccgctgc ggacggttaa ccacctgcgg acctcccgcc gcatgaggtt cacttccact     19920
     aggg                                                                  19924
//
ID   EnSpm-3_DTa repbase;    DNA;    INV; 7350 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.11, Created)
DT   31-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7350
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           2525..4960
FT                 /product="EnSpm-3_DTa_2p"
FT                 /translation="MECFKCSKPFVGLTELYYHFKYEHGLCEIDLYKCKFS
FT                 KCNQEFTNFHNFKRHVKRHKPTEFSETNPSKMRSVPTYDATSNQLFNEEDN
FT                 SFEEASCSFYNLQQTSTEQEVTFPDLEGRLTSLCQNILIELHSKSSFCRKD
FT                 ILFIQEKISKITSDIIEAVKLTIIPKSITEDAHHFLDFCSNPFIYIASEHR
FT                 LLKTLKNIDTFADPILFNVNNEISPVIKQNNPTLDDAKVNGCVMDITFQIR
FT                 KFFELPKVLEDTIQETSKRISSSKTDHFVNSMSYTTKLSSNFHNKIVIPIF
FT                 LYLDGFEINNPLGSHAIIDNICGVYYTFPTIPQHLLSKLDFIFVAAYFKTT
FT                 LGKQFGIDLFLQPLVNCLKVLESEGIVISTDVGPKRVFFVLCNILGDNLGL
FT                 NEILGFNTSFNSNSYCRFCTKTKQDMTKSATHDQECLRNVKNYEEALVQDD
FT                 PKLTGVKKNCIFNELTYFHATENYIVDIMHDFFEGICKYDISEILLNFITC
FT                 EKLFTLENFNYRKEMFRYGESEIGNRTQPFQMNHLKSKSIRASAREMMNVT
FT                 HFLTLIIGDLVPPDNKFWKFFLTLLKIVDILLQSEFEEHVLKKLSELVEQH
FT                 NRDYISLLNTNLKPKYHFLTHYVDVIKMSGPPKHFWSLRFEGKHKEAKVYS
FT                 NNITSRQNISFTLSMKSALKYSRFLQKYKNGLPNLFTIIKSEHCFIEKSEF
FT                 NCVKTKIKFQDFFIKELNFKGTTYKEGYYLTRNSSSAVELYEIVRILKCDS
FT                 NEIFVATKEFMVSCFNEHYQSYEIGSVINNSKIINIKEFEGPPIHIYITPT
FT                 GLKMIRLKKF"
FT   CDS           join(5762..5848,6024..6222,6349..6812)
FT                 /product="EnSpm-3_DTa_3p"
FT                 /translation="MVASNIQPKQNLLKEISEQIVLLFDFEIKEEFVESIE
FT                 QNVDVCWLKFNVEPKEKVFEVWAQTYEWRKNLFQFANSLENIFDALPILKQ
FT                 SFGFELVNTQNVLLLLLLHAVLVPTLRRKQAEGSKYHKCTIEDSRNKFLVW
FT                 KPTIGELQNYISGEVNTCFGNKTSFQPLICCTGSDLHNLEHFYVYVSGIFY
FT                 KLPNILSALDVCFKVFFILNLKYPEECALVWTFVQKFFFEIYLDTDLKSRS
FT                 LSEFLNDLK"
FT   CDS           join(465..537,599..729,784..843,939..1484,
FT                 1624..1783,1845..2200)
FT                 /product="EnSpm-3_DTa_1p"
FT                 /translation="MEDPQLLKFLEDHEVDLVVFDLLQECGYNYDRLQYIS
FT                 AADLDIIFAKREYLGLKSEFREKLLKWKRSQSIDACAGDSAPNSIPTNIEK
FT                 SAQLILQSCEIGKQIILDYQEKGKLTEDKRGKILSIIKESFYNVSSQRYRI
FT                 PKYAEIRKLSEEIVALFPTENKDVYFLSRKDNGKANPSGILFTKLHNLNKR
FT                 KLSTGLDSSSIEEVDAEEYSQEVHEIVRTLKLYNGTEEDCLCLWEVTSSYR
FT                 QNFIKLGSNDIEAIFNEFPIYKQSLGHSFINLDFKSIHPDKAFKLTSLWEE
FT                 SIVKFKAYYEIVVKDKYLLQLLRSCTESLHDNSKHCILFMLLHCAIKPTGR
FT                 SVFMENNKKCLRRHTIQDSICSSVLHIKTINDLQNHLEIKSLNAIKEKSTI
FT                 QPFIVVVGIDLASLTDFYIIIGKQTLKVKSFLKALDCCFKTFHVFNLK"
XX
SQ   Sequence 7350 BP; 2648 A; 1087 C; 1147 G; 2468 T; 0 other;
     cacagagaaa aaaacggaac aataccagat tgatattgtc tcctcaattt gtacatatca        60
     attttttcat ataaatgtaa tacgaattca taccaatatg atacgaaatc ataacaatta       120
     cccatgttga tatgaatccg taacatatta atatgaatac ttgaaagatt gatatgtttt       180
     tcatatcaaa tgggacatcg aaaagtcttc gaaaaaaaag tatggctgtg aatttgtatt       240
     tttaccgtat ttctggtata caatggtatt ataacgcttt atatgcggtg gtcacactta       300
     catttacttc gtactgcgta aataattttg ttgtgaaaag tgaaaattaa aagtgctata       360
     atatataaaa tcctttggta agtatgtatt attttaagat aaagctaaag cctaaagcca       420
     acctgtgtta atggcttagt ttttaaatag tttggcgtaa tatcatggag gatccacagc       480
     tgcttaaatt ccttgaagac cacgaggtcg acttggtcgt tttcgacctt cttcaaggtt       540
     tttataaatc aacaaaaaca ataagatgtt gaggctaatt gtttctatgt aattctagaa       600
     tgtggataca attacgacag actccaatac attagcgcag ccgatctgga cattatattt       660
     gcaaaacgcg aatatcttgg attaaaatcg gagttccgcg agaagctgct aaagtggaag       720
     cggtcacaag taatattaat tttaaaaatg ttcacaattg gttgaactta tttaaaattt       780
     tagagcattg atgcctgcgc aggagatagc gctcctaact caatcccaac aaatatcgaa       840
     aaggtacgat tattatggtt tgaatattat tagtttaatt aattgttcat tgttaatttt       900
     attttgtatt atatttatac ttttatactt taatctagag tgctcaatta attctacagt       960
     cctgtgaaat tggaaagcaa ataattcttg attatcaaga aaagggcaaa ctaacggaag      1020
     ataaacgagg aaaaatctta tcaattataa aagaaagttt ttacaacgtc agctcgcaac      1080
     gctatagaat tcctaaatat gcagaaataa gaaaactttc cgaagaaatt gtggcactat      1140
     ttccaaccga aaacaaagat gtttattttt tgagtaggaa agataatgga aaagcaaacc      1200
     ccagtggaat tttgttcact aaattgcaca atttaaataa acgaaaactg tctacgggat      1260
     tggatagctc aagtattgaa gaagttgatg cagaagaata ttcacaagaa gtccatgaaa      1320
     tcgttagaac tctaaagctg tacaacggaa ctgaagaaga ttgtctgtgt ttgtgggaag      1380
     ttacgtcaag ttatcggcaa aactttatta agctggggtc aaacgacatt gaagctatat      1440
     ttaatgagtt tccaatttat aaacagtctc tcggacattc ttttgtaagc aatttaaaca      1500
     gtttggtcgt agtttgtgat gtccttggag taaatgtttg tgatgtccta atttttttga      1560
     tatttgtaga aaatttgtta tatattgtat atatgactaa atcatttaat ttaaatattg      1620
     cagattaacc tcgatttcaa atcgattcat ccagataaag ctttcaaact tacaagttta      1680
     tgggaagaat caattgtgaa gtttaaggcc tactacgaga tagttgtgaa agacaaatac      1740
     cttctacagc ttcttcgcag ttgcaccgaa tctttacatg acagtaaata aacttaaaac      1800
     tataatacac tataaaacat taatatttct atcttatttt taagattcga aacactgcat      1860
     attgtttatg ttgctgcact gcgccatcaa accaacagga aggagcgtat ttatggagaa      1920
     taacaagaaa tgcttaagac ggcatacgat tcaggactcc atatgtagca gtgttctcca      1980
     tattaaaact ataaacgact tgcaaaacca tttagaaatt aagagtctta acgccatcaa      2040
     agaaaaatct acaattcaac cctttattgt ggtagttgga atagatttgg ctagcctaac      2100
     cgacttctac attattattg gaaagcaaac attgaaagtt aaatcctttt tgaaggcatt      2160
     agattgttgc ttcaaaacct tccatgtctt taatcttaag tagtctattc ttgtttggtc      2220
     atttttgcaa ctttattttt ataatattac aacaagctac gatgtaaaaa atcccagtat      2280
     tatcaggttt attgaatatt taaatcagta gtaactcata ggttgacaac atattttgta      2340
     ttaccattgt catttcaata tgcactttta ttttaattat cctttaatca gttgaatacg      2400
     cactttaatt ttaattatca tttaatcagt tgaatacaga cttttattta ctttatcatt      2460
     ttaaaacgac tatatttaaa catattttat atcattactg tttaatacaa atttggattt      2520
     aattatggaa tgctttaagt gctctaaacc ttttgttgga cttactgaac tatattacca      2580
     ttttaaatat gagcatggac tttgtgagat tgacttatat aaatgtaaat tttctaaatg      2640
     taatcaagag tttaccaact ttcataattt taagagacat gttaagcgac acaaacccac      2700
     tgaattctct gaaacaaatc caagtaaaat gcgaagtgtt ccaacatacg atgcaacttc      2760
     aaatcagcta tttaatgaag aggacaatag ttttgaggaa gcttcttgtt cattttataa      2820
     ccttcaacaa acgtcaactg aacaagaagt tacttttcca gatctcgagg gaaggctaac      2880
     ctcattatgt caaaatattt taatagagtt acactcaaag agttcctttt gcagaaaaga      2940
     tattttgttc atccaggaaa aaatttctaa aataacttca gacatcatag aggcagtaaa      3000
     actaacaatt attcctaaga gtattaccga agatgcccac cattttctgg atttttgttc      3060
     gaacccattt atttatatcg cttcggagca tagactgtta aaaactctga aaaacataga      3120
     tacttttgct gatccaattt tgttcaatgt caacaatgag atatcaccag ttattaaaca      3180
     aaataatccc acactagacg atgcaaaagt aaatgggtgc gtaatggaca ttacttttca      3240
     aattcgcaag ttctttgaat tgccaaaagt tttggaggat acaattcaag aaacatcaaa      3300
     gcgaatatca agttccaaaa ccgatcattt cgtcaactct atgtcgtata caactaaact      3360
     atcatcgaac tttcataaca aaatcgttat cccaattttt ttgtatttgg atggtttcga      3420
     aatcaataat cccttgggca gtcatgctat tatagacaac atatgtggtg tttattatac      3480
     tttcccaaca ataccgcagc atttactttc aaagctagac tttatttttg ttgctgccta      3540
     tttcaaaact actctgggta aacaatttgg aatagattta tttcttcagc cgcttgtaaa      3600
     ctgcctaaaa gttcttgaaa gtgagggtat tgtcattagc actgacgtcg gtccaaaacg      3660
     agtttttttt gttttatgta acatattggg agacaactta ggcttaaatg aaattctcgg      3720
     atttaatact tcctttaatt ccaattctta ttgtcgattt tgtaccaaaa ctaagcaaga      3780
     tatgacaaaa agtgcgacgc atgatcaaga gtgtttaaga aacgttaaaa attatgaaga      3840
     agcccttgtg caggatgacc ccaaattaac gggtgtaaaa aaaaattgta tttttaacga      3900
     gttaacctat tttcatgcaa ccgaaaacta catcgtcgac ataatgcacg acttcttcga      3960
     gggcatttgt aaatatgaca tttcagagat tttacttaat tttattactt gtgaaaaatt      4020
     gtttacactt gaaaatttta attatagaaa agaaatgttt aggtacggag aaagcgagat      4080
     cggaaataga acacaacctt tccaaatgaa tcatcttaag tccaaatcca ttcgtgcttc      4140
     ggctcgagaa atgatgaacg taactcattt ccttacttta ataattggag accttgttcc      4200
     tcctgacaat aaattttgga aatttttcct aacactttta aaaatagttg atattctttt      4260
     gcaaagcgaa tttgaggaac acgttttaaa aaaattatca gagttagtag aacagcataa      4320
     cagagattat atatcattac ttaacactaa tcttaagcca aaatatcatt tcctaactca      4380
     ttacgtcgat gtaattaaaa tgagtggacc accaaaacac ttttggagtc tccgtttcga      4440
     gggaaaacat aaagaggcta aagtatactc aaataatatt accagcaggc aaaatatttc      4500
     atttactttg agcatgaaat cagcattaaa atatagtcgg ttcttacaaa aatataaaaa      4560
     tggcttgcca aacctattta caattataaa aagtgaacat tgcttcattg aaaagtctga      4620
     attcaactgt gtaaaaacta aaattaagtt tcaagatttt tttattaagg aattaaattt      4680
     taaaggtaca acatacaaag aaggatatta tttaacaaga aatagttctt cagctgtaga      4740
     actatacgaa atcgttagaa ttttaaaatg tgattccaat gaaatatttg tagcaacaaa      4800
     agaatttatg gtgagttgct ttaatgagca ttaccaatct tacgaaattg gttcggtcat      4860
     aaacaatagt aagattataa atataaaaga atttgaaggt cccccaattc atatttatat      4920
     aactccaact ggtcttaaaa tgataaggct aaaaaaattt taatcttttc aataacatat      4980
     tcattattaa ttataagtat atatatatat atataagtaa attaagaaat tgaaataaaa      5040
     ttttaatata ttttaaataa aagtaaaagt gtgtttagct tcaaaacaaa aattagggga      5100
     acaaaaatgg attttaaaat gcatgggtac gaaaagcata acattttaaa atgaaacgaa      5160
     tgacaaattg atgcaaaaga atatcagctt ggtttgaaga aataacactt tgatatgaaa      5220
     aaataccatt ctggtacgac atttcccata attttgtagc aaaatttgat atgtgcgcat      5280
     aacaatctat tatgaaaaat accacattca tatgttcgaa aataccaatt tggtatgttc      5340
     gaaaatatac ttttggtatg accacatatg ggaccaaaat tgatatgaaa aaatacccga      5400
     atgatgacca tttttggtat ttttttttct ctgtgtagtt gtagaaaaag tagccaacct      5460
     aacatctagt tttttctcaa aatttcttcg tcgtttgcat atgtatgtac atatgtggaa      5520
     agttccaaaa tttgatttta gttgctaata tacatatgcc taaaaatcgt acagtggaat      5580
     tatgtaattt gtactcatct ttatattttt tcagagaaca ttgctatgaa aggataatat      5640
     tgatttaaac gagattctat taagcaaccc aaagggaaaa attcctttga actattatgc      5700
     taaagagaaa caattcatcc caaagtataa aaaactattg agccaaataa tagctgagca      5760
     tatggtagct agcaatatac aacccaaaca aaatctgctg aaagaaattt cggaacaaat      5820
     tgtcctatta tttgattttg aaattaaggt aacatttgta tacatttaaa aatatactta      5880
     aataaatgta ccttttttta ttttaaatgc ttataggata cctattatat acaagttaaa      5940
     ggaaaaaagc caaaaggatt gatttacatt tatttctatc gaaatataaa gattccccag      6000
     ctatttctaa aatttcgcac gaggaggagt ttgtggaaag tattgagcaa aatgttgatg      6060
     tatgctggct aaagttcaac gtcgagccaa aggagaaagt gtttgaagtg tgggcacaga      6120
     cttacgaatg gaggaagaac ttgtttcaat tcgctaactc cttggaaaac attttcgacg      6180
     ctctaccgat ccttaagcag tcctttgggt tcgagctagt aagttttatt ttaaaaaaga      6240
     gcaaaaaagt aaactcatct taaaggacct aagcgttaag tctgaaggta aataattttc      6300
     atttgaattt tgctattatt tctttcatta atttcaatat tctttcagat acacaaaatg      6360
     ttcttctact tttgttgttg catgcggtgt tagttccgac gttgagaaga aagcaagctg      6420
     aaggatcaaa gtaccataaa tgcaccattg aagattccag gaataaattt ttggtttgga      6480
     agccgacgat tggagaactg cagaattaca tctctggcga agtaaacact tgctttggaa      6540
     acaagaccag ctttcaacca ctgatttgtt gcaccggtag tgatcttcat aatctggaac      6600
     acttttatgt ttatgtttca ggcatttttt ataagctacc aaacatcttg tccgctctag      6660
     acgtatgctt taaagttttt ttcattttaa atttaaaata tcccgaagag tgtgcgctcg      6720
     tatggacgtt tgttcaaaaa ttcttttttg aaatttattt ggataccgac ctaaaaagta      6780
     gatcattatc cgagttctta aatgatttga aataatttac attaagtttt gaaaatggat      6840
     ttctgaatat cataagtttg gtgaagatac gtttttaaaa ccgaaatttt atttataaaa      6900
     caccatatgt attaagataa tataaaatat aaaaatgtaa aaggagaata aaaaattaat      6960
     tttcagtaaa aagcattttt aaatttaaaa aaaattgcct ttaaatatgg aaaagggttt      7020
     cttaaattaa gaaaaatcgc cgtaatttta agaaaaaatc catattttta gaaataaact      7080
     gcccttaaaa ttagaaaagg agtacatatt tttagaaaaa tcgccttatt tttcagaaag      7140
     ttttcttaat tcaagaatat tttcttattt atatggtttt ttgccgtcaa tttaagaaaa      7200
     aatggttatg gattttagaa aagcttacgt aaattcaaga aaattatttc ccataataaa      7260
     tggcgaattg ccgttggctg aaaatcatag gcgattttct tgaatcaatg gcgaatttct      7320
     tgaatcaatg gcgatttttt tttatgagtg                                       7350
//
ID   EnSpm-3_RPr repbase;    DNA;    INV; 1571 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA seqeunces: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm;
KW   EnSpm-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1571
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3229-3229 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           771..1310
FT                 /product="EnSpm-3_RPr_1p"
FT                 /translation="MKQYVKALDEKGNCFQYLCNKFPSLSEAKIKEGIFVG
FT                 PQIRSVMKDKEFEATMTLEEKEAWQAFIDVTKKFLGNTKDLNYAKLVATML
FT                 EKFRILGCIMSLKVHFLFSHLDVFPENLGAVSEEQGERFHQDIREMERRYQ
FT                 GRWSISMIADYCWTLQREDSAAGHKRISKKRSLEGKRKRYY"
XX
SQ   Sequence 1571 BP; 517 A; 244 C; 318 G; 492 T; 0 other;
     cacaggtcta cagtgatttt gctgttttga gtttttgagt cattttgaag tattatgcac        60
     gtcctgatac caagtatgat acccgtttac ttgtatcaca taccattttt tttttattct       120
     tagtcttaat tttttagtct tagtaacgtt attgcatact tcacactatc ttttattttt       180
     aatataatat attttgttag aggaatgcta tttgttggac ctaaaaacct gtggtcgtag       240
     cactgcagaa tattgttgaa ctctttgcca gatggcagca ctcttaacac ctttgtgaag       300
     tgaattcagt taaaagctct aagtgaccag ctagatttcc aaacgaagaa gtttactttg       360
     aatacgtgtg catttattgt cagtttctgt tttatgattc tgtgagtgtt ctaaaggaag       420
     ttctaaaggc gacagtgttt gaacaatcca aatgtgtttt gttacatttg tggtagtttt       480
     gtagtgaaaa agcagagaca aagcataacc tcatttgtcg ctaaagctta taaagcttat       540
     tttggaataa aattaggaga tcaagacaag tcatgggcgc ctcatacagt gtgcagcatt       600
     tgtgttgaag atttgagaaa ttggacaaaa gggaagaaaa aagcattggt cagaaaaaaa       660
     aatggcctga tcgaaccacc ttaactccag gatgtaaaaa tgttgttcag aaatgcttag       720
     tggatcgtaa gaaaatacta ttaccacctc ttcacataaa gttgggtctg atgaagcagt       780
     atgtgaaagc cctcgacgaa aagggcaatt gttttcaata tctttgcaac aagttccctt       840
     ctctctcaga agcaaaaata aaagaaggta tttttgtagg accacaaatc agaagtgtaa       900
     tgaaagataa ggagtttgag gctacaatga ctcttgaaga aaaagaagcc tggcaagcct       960
     ttatagatgt aactaagaag tttttaggaa acaccaaaga tcttaactat gcaaaattag      1020
     tagccacaat gcttgagaaa ttcagaattc tcggatgcat catgagtctt aaggtgcact      1080
     ttctattttc gcatttggat gtatttcctg agaatctggg ggcggtgagc gaggaacaag      1140
     gcgaacgctt ccatcaggac atccgggaga tggaacgacg gtaccaagga cgatggagta      1200
     tatcaatgat agcggattac tgctggacgc ttcaaagaga agactctgca gcaggtcata      1260
     agagaatttc caagaaaaga tcactggaag gcaaacgaaa acgttattat tgattaaata      1320
     acattctagt gaatcaacat tgcgcatttc caagtaatac aaccagcatt ttaatcaaaa      1380
     ctgtattaat atttgaaaag aaatgtgtat tttttgtaat taacattgaa tttttcattc      1440
     tcgatttgta aaaaaacctg atgtgatagg agaaaagggg ggttattttt gaaaatggct      1500
     gtactcaatt gtatataatc acttttcaga agtaaaacag ctctcaaaaa gtttcatttt      1560
     gtagacctgt g                                                           1571
//
ID   EnSpm-3_SIn repbase;    DNA;    INV; 3874 BP.
XX
AC   .
XX
DT   11-JUL-2012 (Rel. 19.02, Created)
DT   11-JUL-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   EnSpm-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm;
KW   nonautonomous; EnSpm-3_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3874
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 387-387 (2014).
XX
DR   [2] (Consensus)
XX
CC   The 5'-end is not reached.
XX
SQ   Sequence 3874 BP; 1356 A; 602 C; 596 G; 1320 T; 0 other;
     ctaaaattta acatatctaa aaacataaaa taatacggtt tcttttgtta gagatgttat        60
     aataaaagtt aacataaatt ttctttactg ttaataataa atagaaaatg taaattaacg       120
     aattgactaa tttcacagcc ttacttttat aaccgcgctt tagtcccggt ctacaatagg       180
     agtagtaagc cttaagtctt aggaaattaa ccaatcacag atgaatatga agacaataat       240
     tgactatgat tgctattgta catcgggact tacaaaaatt aacaacccct atagcacact       300
     gctattgttt gtcgtcgttt tggcatcaaa acaacatcaa acatgtcact tgatgtcatt       360
     ttgatgtcaa aaattacgaa tactaacgaa gtgtgtatct caataattgt ggctccgtta       420
     tttatagccg atgcgccagc aagagctcaa atacaaaata tagttaattt taatggaaag       480
     tacggttgca acatctgcga gataaaaaca gaaagataca agccagtttt cggacaaaaa       540
     atcattcgtg tttataatta tccaaagaaa caaatcaaac taaggacagc ggaaaaaatg       600
     gaagatcaag ctgaaagagt attaataaaa aagaacgaga tattaaaggt gtcaagggtt       660
     actctgtagt ttctctatta ccttttttag atttgtccac ttgtctcttg cctgaataca       720
     tgcattcagt tttgttagga ataggcaaac aattcattaa tatttggttt cataaaaaag       780
     gtgcatggaa cattgtacaa tatttaaggg aaattgataa aacaggcaca caaaaaaaca       840
     aaagtgtcat gtccgagaga ctacacctat gtatccctat gcattttgac gccctgaaac       900
     cgaatatgac ctcagaattg ctccatcaga tcaagatttt ttttacactc aaagaattgc       960
     taaacgttcc ttaaaattac acactattca acccggtaaa aaaaatccta acctaatgga      1020
     gcaattctaa agtcatattc ggtttcaggg cgtcaaaata cataggaata cataggtgcg      1080
     tagtctctcg gacataacac ttttgttttt ttgtaattgc ctgtgtaatt accaactcga      1140
     ataagaatta tcaaagattt catattctta actttaatta ataagaactt atttatgtgt      1200
     tgaataggta tatgtttaat ttctcaaagc tttctgacga tgaaagaaca ttttagtaaa      1260
     tgtaacatta taaggttgaa aaataaagta taaattatta tctatttcca agaagaatgt      1320
     aatagatcca tatttctttt ttttatctat ttccaagaag aatctaatag atccatatta      1380
     gtaaaaaaat tacacaggca cacaaaaaaa caaaagtgtc atgtctgaga gactacacct      1440
     atgtatccct atgtattttg acgtcctgaa actgaatatg acttcagaat tgctccatca      1500
     agtcaggatt tttttttacc gggttgaata gtgtgtaatt ttaagaaacg tttagcaatt      1560
     ttttaagtgt aaaaaaatcc tgacctgatg aagcaattct gaggtcatat tcggtttcag      1620
     gacgtcaaaa tacataggga tacataggtg tagtctctcg gacatgacgc ttttgttttt      1680
     ttgtgtgcct gtgtaatttt tttactaata ttcgaccact tcattcattt catagaatgc      1740
     cacgaagtat ttctctccat tccttttaca aagcttctga gatttataat tggattttat      1800
     tctattctgt tccgattttg tccaactttt tacctgataa atatttccaa cactggctac      1860
     ttctagttat tgctctcttt attctacttc aaaacagtat caatacagaa ttagagcttg      1920
     aagaagcgga aatttgctta agattattcg tgaaagatat taaagttttg tacggcgata      1980
     gagaactcac ttacaatgcg catcaacttt tacatctcgg tttgtgtgtt cggcgatggg      2040
     gtcctctatg ggcaacatcg gcattcccat ttgaaagctt taatggtttt ctagcaaatt      2100
     gtgtacatgg gactaagaat atgagtcaag agattattaa taatttaaag atagctcaag      2160
     gcgcagcgat tttaaaaaat cagtgttttg ctgacgaaca tacgactaac catcatccat      2220
     ctaatatcga aaaagattac aaattacttg gttctcctca agaattgaaa tttatgaatg      2280
     atattgagag aagagtatta acattaaatg gcctacacat cgataatatt tatctattta      2340
     cgctcgagct aaaattaaaa atgagcttta tacttcacaa ctatataaaa ttactaaaaa      2400
     tgatagctct aatgtacaag taacgaccaa tgacaataaa actaaatatg gatctattag      2460
     attcttcttg gaaatagata ataatttata ctttattttt caaccttata atgttacatt      2520
     tactaaaatg ttctttcatc gtcagaaagc tttgaaaatt aaacatatta tacctattca      2580
     acagataaat cagttcttat taattaaagt taagaatata aaatctttaa taattcttat      2640
     tcgagttggt aattatttat gcaaatctcc aaacaacttc aactcaaatt tttaatgtaa      2700
     tttaaattaa ataatcaaat tgatatttct ttgctttttt ttaactatca cctaataagc      2760
     ttatgtacta aataatttaa attatattct tctgcaattg tcttttgtat tttagatata      2820
     aggcacattg ataaataaaa ttatactaaa taactaacgt tttttatttc taaaaagtac      2880
     tttgtcatca gcaaattatg tttgtatcat aattgattta ttgtaatata ttagagatat      2940
     ttaattaaat tttttaaatt tgctatgtat aaataaattt ctgtttatat atttaacact      3000
     tgccgtaatt ttttgtttct cgccattgca ttgaggttat tcgcgtttta cgcttctatt      3060
     aaaaagtact ccgtaatgag acggttttcg atcataggcg gggtgcaggc acctgtagca      3120
     cgtactgtac cgaagtgacc ggagtacaca acgcgggaaa ttttgctcgg acgcgaatga      3180
     ccccatgatg gctagtaaga gttaaatatg aaattagaca aatatcatta aacatttaat      3240
     cataataatt aaatatgatc agatatcaaa tcaatttgat ctgctcagat ctgaatagct      3300
     tttaatcaaa tacaacctca tttctactta taatatttcg agatatgcat atctgaccat      3360
     tggtcagacg taaagtattt tgggtcgcat ttgttaaata tgattatatc taaacagatc      3420
     tgataatatc tatcattgat ttgtagcgat actgcagtca tctggactgt ttcgctgaaa      3480
     atcaatgata gatattgtca gatctgaaca gatatgtcag atctggatta ttctcgaaaa      3540
     tatagaatca cagatattgt cagatatgaa catatatgcc agatctggga ttttcccgaa      3600
     aatacagaat cacagatatt gtcagatatg aacagatatg tcagatctgg gatattccag      3660
     aaaaattgaa tcgcagatat tgtcagatct gaagagatat gatccgattg aagccgtcaa      3720
     agagtacaat atatgccaca tatggttata tattgacaga tatgattaga tctgcgtaga      3780
     tatgatgagc catatctgag tatatctaat cagatataat ttgatctgcc gagatatgat      3840
     ttgatccggt cagatctaat tcttttttcc cggg                                  3874
//
ID   EnSpm-4_DTa repbase;    DNA;    INV; 6123 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.11, Created)
DT   31-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6123
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(985..1051,1119..1249,1314..1403,1683..2228,
FT                 2343..2502,2561..3035,3211..5638)
FT                 /product="EnSpm-4_DTa_1p"
FT                 /translation="MDKLTEFIEENSLDPVCLLNLIDCGYTYENLQFIEND
FT                 DLNFIFPNREDTALRSEFRAKLFEWKAKNKKNLQTLNQPKSVPTQNVEANM
FT                 QSGPNVCKSAVDILQSTSCGKKIIELYNSIHVLSEENRRKIVHLISENFYN
FT                 PQNNTYASVKLAEIEKLANEIVNIFPSEKIEIYFIGRKAAKRSSPGGILFN
FT                 RLHNHFKKRKMSPKTVVSEPETAVFVASSEIVDCVQKLKFYVGTEDDSMEL
FT                 WTATHEFRKNFISNPDNNFAEVISQFPLFKQATGFKFLEHDFNKLHPNRQF
FT                 GLTTKWEDTVPKLMSYYNIYLKDNFYKKLFKSLDDSVCPSSKDCILFMCLH
FT                 AVIKPSHRFTVTHGNVKSFRKATIEDSVCSTVLQVSEVNDLQNHLEQLNNK
FT                 NVESNTPIQPFVIVVGTELTNLTEFYVSFGEHLYKFSSFVLALDICFKVYQ
FT                 VFGLKYPNESHKVWSFLQEFMYNISTPFDIKHSNVVNVIEDLQKMEFSSLI
FT                 TLCLHFKHHHNLKETDKYKCIEFNCDQRFSSFRIFKAHLKRHINLKSVQVS
FT                 KDAQGSDCNNALQICSTESNSFDDPPTCSQVEITTESSSDLSFGQIIKSFE
FT                 SKILEVCQQAITKLHAKDNFCRKDVLFVQNIFEEVNTTIVDSFKDLFLDKI
FT                 SSETRPHAKSFLDFCCMPFKSVETEHLFLKKLSSDRYFEMPTVFNVSNELQ
FT                 ETHQNYKPTIAPSNIKGCIMPIIFQIKTFFELPGILKSTMDLMKKYEGNFN
FT                 LSHYVNGTSFKGKVSNFEKKYVIPIFLYLDGFEVNNPLGSHAGVDNICGVY
FT                 YTFPVLPQHLLSKLDFVFVAAYFKSKHAKKYGSDPFLKPLVDVFKSLEETG
FT                 VEISSNEGPIKVYFILSNILGDNLGQNEVLGFTTSFKATFYCRFCTLSKEN
FT                 TAKEGVALQKDLRTKENYENALALNDLKATGIKSSCIFNDLKYFHVTDNFI
FT                 ADIMHDIYEGVCRYSICEVLLHLILKEKLFSLNTFNCRKNLFDYGESDLGN
FT                 KSIHFELYQLKNISIKTSASEMKTLVHFFTLIIGDFVPVGNKVWHYLTNLI
FT                 KIIDILLLSEFDSSSINILTNLIKELNEGYVKLFEKPLKPKFHFLTHYPEI
FT                 IRRSGPPKHFWNFRFEAKHKEAKIYSRNVMCRKNITYSLSIKSGIKYSLFL
FT                 DKNKEGFPKNFVILKETPCEINAADFSSILSNFQNSFKNIIINSLNYKGVV
FT                 YKTGFCLTLKKIGEGLKLHEIRYILITNEEDIFILSYQHDLIEFDDHYQSY
FT                 KLGKKENSLKINNINIFKGPPVQYYNKSTVSYVRIKSF"
XX
SQ   Sequence 6123 BP; 2141 A; 949 C; 966 G; 2067 T; 0 other;
     cacccaaaaa aaaaaccgaa agtttaaatt taataacggt tgtgttaata atatactaca        60
     gctagtatta aacggacagt attaatttaa tactatataa tataaactct atactttcta       120
     gtttcttttc tataccaaag agtctagaaa ttgaatttgt gatattattt ttaaaccacg       180
     tacattacat atttcagttt aaaactaata cttttgattt ctaaaagaaa ctagaagcag       240
     tatacaaaat taaagtatta aatccatact aaataatata aagcctacac tctgcagttc       300
     taatttaatg ctgataagta taactgttat actctgtaga ttaaattata tatcagagtt       360
     tcgattatca ttcctggtgt gaaactagga aaataatgaa taatgaaaaa caaatcctgg       420
     agtgaaactc ggagcacatt aaaaaggcgt taaacgattt cagtgacaat atcaaaaacg       480
     cgttatagga tttcaatgac gtttaacgca ttagtcgttt gttgtagtca tcgtgtttct       540
     gcattgtgcc gagtgaagaa aaaaaaggac atacatacgt aagtaaaata aaattgttct       600
     atttctaaat agattaagaa tttctaatta ttgaaaaaag tttgtgtgtt gttctcaaaa       660
     gtgataaagt acatgaataa ataagtgtgc tgttcttgtt gccatggtaa taagttattg       720
     gctcatgcgc atacatacac aaatgtttca tgtatacacg tgacaattga tttacacatg       780
     cacatgcgca tgtgcacata ccttgttacc atggcaacaa gaacttatta tgttcttatt       840
     gtaaatgttt tttattttga ccaatacatt tacagattta acgctgttta atccttattt       900
     atttatttcg cgtgccagta ttcacaatgt aaatttttca tacctatttt ttaacattta       960
     atatttcagc gattacataa aataatggac aagttgaccg aatttattga ggaaaatagc      1020
     ttggacccag tttgccttct aaatttgatt ggtaagtaat ccatgaagaa ctataaaata      1080
     taggtatttt tcgaaaaatt aagaacattt ttttttagac tgtggctata cttatgaaaa      1140
     tttgcaattc atcgaaaatg atgatttgaa tttcatattt ccaaatcggg aagacaccgc      1200
     tttgcggtct gagttcaggg ctaagctttt cgagtggaaa gctaaaaatg tgagcatttt      1260
     tatagacaaa tttaattgtt ttacggtcaa cttgcctaat tacttttttt tagaaaaaaa      1320
     acttgcaaac tttaaatcag cccaagtccg tcccaacaca gaatgtagaa gcaaatatgc      1380
     aaagtgggcc gaatgtttgt aaggtaaata tatatctttt tagcacaaat tcattgcgct      1440
     gcttttgtaa cttgggcctc accgagtagt ttttatccac cgttgaataa atagtagaat      1500
     attttaatat ttgaaattaa tctgaatgat atgtctacat tctgactaag ttaattattg      1560
     ttaaatgaaa atttgatttt cttatttaca aagcttctta ttaaaactac tcggtccaac      1620
     ctaaaaacct ctttaaatca tttcactaat ttttttatat tcttatttaa ttattaatga      1680
     agagtgcagt tgatattctt cagtctacca gttgtggaaa aaaaattata gaactctata      1740
     attcgattca tgttttgtcg gaggaaaata ggcgaaaaat tgtacattta atttccgaaa      1800
     atttttacaa tccccaaaac aacacctatg caagtgttaa attggcggaa attgaaaagc      1860
     tagccaacga aatagtaaac atatttccat cagaaaagat cgaaatttac tttatcgggc      1920
     gcaaggcagc aaaaagaagt agccctggtg gaattttgtt taacaggctc cacaaccact      1980
     tcaaaaaaag aaagatgtct ccaaaaacgg tggtctcaga accagaaacc gcagtcttcg      2040
     tagccagcag cgaaatagtc gactgcgttc aaaaattaaa gttttacgtt gggacggaag      2100
     acgactcgat ggaactgtgg actgcaactc atgagttccg gaagaacttt attagcaatc      2160
     cagacaacaa tttcgctgaa gttatcagtc aatttccttt atttaagcag gccacaggat      2220
     ttaagtttgt aagcttgaag ccccattttg ggatctatgt gtttgtgatg ttttgttatg      2280
     ctattatatg tttaaaacca ttttgtattg ttttttaaat tgcattttat atatacttct      2340
     agttggaaca cgacttcaat aagttacacc ccaatcgcca atttggattg actacaaagt      2400
     gggaggacac cgtacctaaa ctgatgtcct actataatat ttatttaaag gacaactttt      2460
     acaaaaaact ctttaagtct ttggacgatt ctgtttgtcc aagtaagttt ttttttaatg      2520
     ttcttctgct ttaaatttaa aaactgcatt tttatattag gctcaaaaga ctgcatactg      2580
     tttatgtgtt tgcacgctgt tataaagcca tctcaccgct ttaccgtcac ccatgggaat      2640
     gtgaagtcct ttcgcaaggc aacaatagag gacagcgtct gcagcacagt attacaagtc      2700
     tcggaagtaa atgacttgca aaatcacttg gaacagttga acaacaagaa cgtcgagtct      2760
     aatacgccga ttcaaccgtt cgtcatcgtt gtcggcacag agcttacaaa cttaactgag      2820
     ttttatgtta gctttggaga acacctttat aagtttagct cgtttgtact ggcacttgat      2880
     atatgcttta aagtgtatca ggtatttggc ctaaaatacc ccaacgagtc gcacaaggtg      2940
     tggagttttt tacaggagtt tatgtataac ataagtacac catttgatat caaacattcg      3000
     aatgtcgtta atgtcatcga agacttacaa aaaatgtaaa taatttggta taatatttta      3060
     gtcttaatat atatatttac tcatagcatt agttagtttt aagatcttta atatccataa      3120
     tcattttagt cttaattcat catttttcat tttcatttta atttttctac aaataatcca      3180
     aagcaaaatg cattgcttta aatgttttag ggaattttcc agcctcatta ccttatgctt      3240
     acattttaag catcatcaca atttaaaaga aacagataaa tataaatgta tcgaattcaa      3300
     ttgcgaccaa aggttttctt cttttagaat atttaaagct caccttaaga ggcatataaa      3360
     tcttaaatca gtacaagtct ccaaagacgc acaaggttca gattgcaata atgcattaca      3420
     gatctgcagc actgaaagta attcttttga cgaccctccg acttgttctc aagttgaaat      3480
     cactacagaa tcttcttcgg acttatcatt tggacaaata attaaaagtt ttgaatcaaa      3540
     aattttagaa gtctgccagc aagccataac taaattgcat gcaaaagata atttttgcag      3600
     aaaagacgtt ttatttgttc agaacatctt tgaggaggtt aatacaacca ttgtagactc      3660
     atttaaagac ttgtttttag ataaaatttc atccgaaact cgccctcatg ccaaatcgtt      3720
     tttagacttc tgctgcatgc catttaaaag cgttgaaact gaacacctgt ttttaaaaaa      3780
     actaagtagt gacagatatt ttgaaatgcc cacagttttt aatgtaagca atgaattgca      3840
     agaaacgcat caaaattaca agccgactat tgcaccatcg aatataaagg ggtgcattat      3900
     gccaattata tttcaaataa aaacattctt tgaactgccc ggtattttaa aatcaactat      3960
     ggacttgatg aaaaaatatg agggaaactt caatctaagc cattatgtaa atggaacttc      4020
     tttcaaagga aaagtttcca actttgaaaa aaaatacgtt attccaattt tcttatattt      4080
     ggatggtttc gaagtgaaca atcccttagg tagccatgca ggcgttgaca atatatgtgg      4140
     ggtatattac acatttcctg tgcttcctca gcatctactt tccaaattgg attttgtatt      4200
     tgttgctgcc tattttaaaa gcaaacacgc aaaaaaatat ggcagtgacc ccttccttaa      4260
     acctttagtt gacgttttta aaagtctgga agaaactgga gtagaaataa gttcaaacga      4320
     gggtccgatt aaagtttact tcatactttc caatattctt ggggacaatt tgggccaaaa      4380
     cgaagttctt ggttttacga cgtcttttaa agccacattt tattgtcggt tttgtacact      4440
     ttctaaggaa aatactgcca aggaaggtgt tgctttacaa aaggatttaa gaactaagga      4500
     gaattatgag aatgctttgg ctttaaacga tttaaaagca acaggcataa aatccagctg      4560
     catatttaat gatctaaaat attttcatgt gacggataac tttattgcag acattatgca      4620
     tgatatttat gaaggtgtct gccgatacag tatctgcgag gttcttttgc acttaatttt      4680
     gaaggaaaaa ttatttagtt taaatacctt taattgtaga aaaaatcttt tcgattatgg      4740
     agagtcagat ttaggaaata aatcaataca tttcgagctt tatcaactta aaaatatttc      4800
     gattaaaact tccgcatcgg aaatgaaaac gcttgttcat ttctttacct taattattgg      4860
     tgactttgtg ccagttggaa ataaggtttg gcattacttg accaatttaa tcaaaattat      4920
     tgacattctt cttttaagcg aatttgactc aagctccatt aatatattaa caaatttgat      4980
     taaggagctt aatgaaggat atgtaaaatt atttgagaag ccacttaagc ccaaatttca      5040
     ttttttaacg cattacccag aaataattcg aagaagtggt ccccccaaac acttctggaa      5100
     ttttagattt gaggcgaaac ataaagaggc caaaatatat tccagaaatg taatgtgtag      5160
     gaagaacatt acgtactccc tgagtataaa atcgggcatt aaatattccc tatttttaga      5220
     taaaaataaa gaaggatttc ccaaaaattt tgtaatatta aaggaaactc cttgtgaaat      5280
     aaatgcagca gacttttcaa gtatactcag taattttcaa aatagtttta aaaacattat      5340
     tattaatagt ttaaattata aaggagttgt atataaaaca ggtttttgtt taacattaaa      5400
     aaaaattggg gagggtttaa agttacatga aataaggtac attctaataa ccaatgaaga      5460
     agatatattt atattaagtt atcaacatga tctgatagaa ttcgacgacc attatcaatc      5520
     gtataaactt ggcaaaaaag aaaattccct aaaaattaat aatataaata tatttaaagg      5580
     accaccagtc caatattata ataaatcaac tgttagttat gtaagaatta aatcatttta      5640
     aatatatttg ttagattaca taaatgtata taatttaaaa taaaccaaaa ataaaaattc      5700
     tgtgtacttt tattgggggt tgttcctaaa ctacaatcag tttaaattgt ataccacagt      5760
     tcttaggaac tagtatgaat gttgtacgca atagtatgaa gagtatacta agagtagttt      5820
     cacttgtata ccacagttca ctaacgtagt gtggtttcta accgaattag tataacatgt      5880
     ataataaata gtattgcagt tatactaaat agtatcaaaa ataaactatg agcctcaatg      5940
     cgactgcacc tagtgagtat aaattttata ctcgggggtc tcaatttaat actatcgaaa      6000
     gtttcaattt aatactttcg aaattatata gttaatactc atcttattga tgcaaattag      6060
     aaactcaata gtgtagaatt catgtaacaa tagtttcgtt tctatgacta ttttttttgg      6120
     gtg                                                                    6123
//
ID   EnSpm-5_DTa repbase;    DNA;    INV; 6116 BP.
XX
AC   .
XX
DT   23-JUL-2021 (Rel. 26.11, Created)
DT   31-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6116
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6211-6211 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           3311..5710
FT                 /product="EnSpm-5_DTa_2p"
FT                 /translation="MYACFRCSNKFSSGKLLIHHLKYDHFITLTDFPIQCI
FT                 VPNCNQLHSNFSALQRHLDTQHKNQPDVDNNSPYMKGARTADQPNDIFEND
FT                 TSMSFESIENVSTDAYDEVNIITDLEKDALMFSIDLLSRNQMPRKYVTEIQ
FT                 GMITALCFKMAKAIRQCINQGKQQNMDNILKFCESPFAKIGTEYKLFKMLK
FT                 EQQLYEEPKSFIINQRLAAINVQGNPTLDTKTDEIFVMPLQFMIRSIFKNS
FT                 NLLSQTLQNAKNYASNSALTNLASGELFKSKLSKFGTSLVVPYVLYLDDFQ
FT                 INNPLGSHTYSICGCYLNFPTMPQHLLSKLDFIFHAAFVSTENLKEIGNEN
FT                 CFYNLVEELKLLENGMEFSIDGQDKKIHFLLILIVGDNLAVNSVLGYVQSF
FT                 NATKYCRSCTRTKTQMRYDVIQKGRFLRNNENYRQMLSEQNFQETGIKNSC
FT                 VFENLDYFNVPDNFCFDIMHDVYEGVCNYDLCHILLSLINENIITLDQLNT
FT                 RKRLFQYGEINVGNISTNIEIRRLKSCNLRMTASELMCFVHFLPLMIGDLV
FT                 PPRNKHWRILITLLDIIDLLGKSTFETEDLIKLKMLIKKHHGGYIKLYGSL
FT                 KPKHHFMVHYPRAIRMCGPLKYLWCMRFEAKHKEAKIYFQNITSRVNPPHT
FT                 LAIKSGIKFCQFLLRLENSVETLFVIKNTLPLNHDIESCLSKIDCPFNLHN
FT                 AQLSNSIIYKGMDYKSNNYLVKNENPDQIFKIFLFVLENECIYVVSRVVSL
FT                 NAFNCHFQSYEVGAATDKFEILSIDKFLSPPLHVHPINNGKSYIRIKRI"
FT   CDS           join(2796..2574,2247..2126,2062..1958,1903..1691,
FT                 1627..1304,1244..1085,1022..547)
FT                 /product="EnSpm-5_DTa_1p"
FT                 /translation="MPAKAKRKRIILSDSEPEENIEEVKDQKNTADPVPCS
FT                 TFEVMCLSPALPEDSDKVKLSNLMKELGMEHLMQYLIDANITFDCLKYMDR
FT                 DDIKEAIPPLGPRLIFREKLFEWRKTFYEANENSVEPPLKQNEPVKIEEDQ
FT                 SINSRKSINYKDLKNLIMETSRGRQILNFYEANNCLTKEKRDILINIILED
FT                 AIATNVILKPFDMANITNDIVSIFPKEKEMMDYYFIPRSGKSNCGGKLFSK
FT                 FKNRNHKRSKMEIQHVTQKPSLDQMSEVDVSVGNTLKGYLNRSSSNWEEIK
FT                 DKWQKTFTMRQNDLRQMEWEEFFKSWSKLSHARAPELISIDFNIMYPSKSH
FT                 LLLAKWDSFKTHIAAVYKKSLSNKCFKELFKRGESSFDPNIQDYIYTTLLT
FT                 TLLPPSARFVNESGKQFKKTTIMDSQECFIIRADTHSDIDIKIAKIISKFY
FT                 SVGMTVQPFLVVVGLADDCIKSFFVYFEKMLYKLDSFLDSLDICFQIFQVL
FT                 NLKYPSACQQPWLFIQKYFYEISTEYDLKSPRIAHLLNELKNLSN"
XX
SQ   Sequence 6116 BP; 2070 A; 989 C; 976 G; 2081 T; 0 other;
     cactgagaaa aaaaacagtc taaaattaag agaaatattc ttaaattaag aacgtttggt        60
     catgggaatg agtcaagttc gattgttctt atattaagac agaatgttct taaatgcaga       120
     acacttattg tagaccaaaa aatctaaaat caagaaaaat tgatcttcat ctaagaacac       180
     attttattaa tttaagatgt caatggtata gaattaagac taaatattct gaacctaaga       240
     gtattgtaaa caaggaagtg atcttctttt aagattaaaa atactttatt taagaatata       300
     aattcattta tttatttcat aacattctca acaataagaa attaatttct acaacaatat       360
     tcagtcatac aagttgcttc tgagattaat taagtgtatc attacacttt aaggtacata       420
     cttcagttgt aagtctttct ttttaataac gtaaaagtag attttttcag taaattttaa       480
     cttaaatttt tagcaaaaaa ctatggctct atgcatttcg aatgataata aaatactcgc       540
     atgttagttt gataagtttt tcagttcgtt aagtagatga gcgatacgtg gcgacttaag       600
     atcatattca gttgatattt cataaaagta tttttggata aatagccatg gttgctgaca       660
     ggcggaagga tattttaaat taagcacttg aaatatttga aagcaaatat ccaaactatc       720
     caaaaatgaa tcaagtttgt ataacatttt ttcaaagtaa acaaagaaac ttttaatgca       780
     atcatcagct aatccaacga ccactaaaaa aggttgaacg gtcataccga cagagtagaa       840
     ttttgatatt attttagcta ttttaatatc tatgtcactg tgagtgtcag cccgtataat       900
     gaaacactcc tgggaatcca taattgttgt ctttttgaat tgcttgcccg actcgttcac       960
     aaagcgagct gatggaggca gtaaagtagt cagcaatgtt gtataaatat aatcctgaat      1020
     gtctataaag atataaaacg gttatattta cgtggtaaaa taatacttgg caatttatac      1080
     ttacttggat cgaacgaact ttcacctctc ttaaataact ctttaaagca tttatttgaa      1140
     agagattttt tatacacagc cgcaatgtgg gttttaaaag agtcccactt tgctaaaagc      1200
     aagtgacttt tggacgggta cataatgttg aaatcaattg agatctaaaa aaaaggcaat      1260
     atttaataat tgagtatttt atataaaaaa aacattagcg taccaattct ggagcccttg      1320
     catgagatag ttttgaccac gacttaaaaa attcttccca ttccatttgg cgtaagtcgt      1380
     tctgccgcat tgtaaacgtc ttttgccatt tgtcttttat ttcctcccag ttagaggatg      1440
     atcggtttaa atatcctttc aacgtatttc ccacagacac atctacttca ctcatttgat      1500
     ctaatgaggg tttttgggtt acatgttgga tttccatctt actacgttta tgatttcgat      1560
     tcttgaactt ggaaaatagt tttccgccac aattagattt gccacttctt ggtataaagt      1620
     agtaatccta gaaaatataa atgaatttaa aaatatatga atttaataca taaatctata      1680
     tcaaacatac catcatttct ttctccttcg ggaatattga gacaatatca ttagttatgt      1740
     ttgccatgtc aaacggtttt aatataacat tagttgcaat ggcatcttct aaaattatat      1800
     ttattaaaat gtctcttttt tccttagtca agcagttgtt tgcttcatag aagtttaaga      1860
     tttgtcttcc tcgagatgtt tccataatta agtttttcaa gtcctacatt taaagcacat      1920
     atattattaa aaaacttggc ttaaatctct ataatacctt ataattaatg gattttctgc      1980
     tgttgatact ttggtcttct tcgattttga caggctcatt ttgtttgagt ggaggctcaa      2040
     cagagttttc gttggcttca tacttaaaag aaataagagt taaaaatgta tgccaattgt      2100
     tttttttgta aattaagata cttacaaaag tttttctcca ctcaaacagt ttttccctga      2160
     aaattaaacg cggacccagt ggtggaattg cttccttaat atcgtccctg tccatgtatt      2220
     ttaaacaatc aaatgttata tttgcatcta aggaataaaa attagcttaa ctttaatcag      2280
     cggagcaaca aagggagaag aaaaaaaatg tgagcgtaca tatgtaaata ctaatacaca      2340
     cactgtcgca actggagtgt tttcctttct tcacattctt ttcatttatt ttgtttatat      2400
     cacctatggg ctatgcagtt ttttcggccg ctgcgctgat agcttttcga cgctgttaag      2460
     cagagaaacg tggatgtcga aacgctaaca gcgcagcggc agaaaaactg cgtagcccat      2520
     gggtcgggag tgctgcttct gctggccacg actggtttat atgtttttct taccaatcaa      2580
     gtattgcatt aaatgttcca taccgagttc tttcattaaa ttagatagct taactttgtc      2640
     tgagtcctcg ggtaaggccg gacttaggca cataacctca aaagttgagc acggtaccgg      2700
     gtcagctgta ttcttttgat ccttcacctc ctcaatgttt tcttcaggct ccgaatccga      2760
     aaggattata cgctttcttt tagctttagc cggcatttta acacgcactg ttttttcaac      2820
     aattttttcg atttcacaac cagtcgtgca cgcgaacaat tgggaatggt tcagtgtgac      2880
     cattccgtta aatcatcgat atctattaag acatcgatgt taaaaatata actagtttaa      2940
     ggcaaataaa aaaaggggga cattttttaa ttaatattta attagcattt gtttattggt      3000
     gtacactttt tattgaagcg cgttactagt aaattacgat aataggatcc gatattcgat      3060
     aattttatcg aaacttttct gttttgtttt gattatcgta cacacatata caacgaaaac      3120
     attaaagacg gaaacaataa acaagcttga tatcaacgaa atttaagaaa cgaagacgtt      3180
     acttgcaggc attagaaatt caaaatttaa aggtacgccc aatttctgcc ctcggtacgc      3240
     aagaaatcat gtaaagtttt tattgttttt attttatttt agagaatatt attacttacc      3300
     ttggaacatc atgtacgctt gcttcaggtg ctcaaacaaa ttttccagcg gaaaactttt      3360
     aattcatcat ttaaagtatg atcactttat aacattgact gattttccaa tacaatgtat      3420
     tgttccaaat tgcaatcagc tgcactcaaa cttttcagca cttcaaaggc atttggatac      3480
     ccagcataag aatcaacccg acgttgataa caattcacca tatatgaagg gagcaaggac      3540
     cgcagatcaa ccaaatgata tctttgaaaa tgatacctcc atgtcatttg aaagcattga      3600
     aaatgtaagt actgatgctt atgacgaggt taatatcata actgatttgg agaaagacgc      3660
     gttaatgttt tccattgatt tattatctcg aaatcagatg ccaagaaaat atgtgacaga      3720
     gattcaagga atgataacag ccctttgctt taaaatggcc aaagcgattc ggcaatgtat      3780
     taatcaaggc aagcaacaaa acatggataa tatcttgaaa ttttgcgagt caccgtttgc      3840
     caaaattgga accgaatata aactttttaa aatgttaaag gagcagcaat tatatgagga      3900
     accaaagtcc tttatcatta accaaagact ggcagcaatt aatgtacaag gaaatcctac      3960
     cttagacaca aaaaccgacg agatctttgt aatgccacta caatttatga ttaggtctat      4020
     attcaagaat tcaaatcttt tgtcgcaaac tttgcaaaat gctaaaaatt atgcgtccaa      4080
     tagtgcactg actaacttag cgagcggtga actatttaaa tccaaattat caaaatttgg      4140
     gacaagttta gttgttcctt atgtccttta tttggacgat tttcaaataa ataaccccct      4200
     gggatcccac acatattcca tttgcggttg ttacttgaat tttccaacga tgccccagca      4260
     cctgttatcg aaattggatt ttatttttca cgcagctttt gtatccacag aaaatcttaa      4320
     ggaaattggg aatgaaaatt gcttttataa tttggtagag gaacttaaat tgctagaaaa      4380
     tggaatggaa ttttctatag acggacaaga caaaaaaata cattttctac ttatcctaat      4440
     tgtaggagat aatttggcag taaacagtgt attagggtat gttcagtcct tcaatgcaac      4500
     aaagtattgt agatcttgta cacgaaccaa aacccaaatg agatacgacg ttattcaaaa      4560
     aggacgattt ttgagaaaca acgagaacta tcgacagatg ttgtcagagc aaaactttca      4620
     agaaaccggc attaaaaatt cctgcgtttt tgaaaacttg gattacttta acgttcccga      4680
     taatttttgc ttcgatataa tgcacgatgt ttatgaagga gtctgcaact acgatctctg      4740
     tcacatttta ctatctctta taaatgaaaa tatcattaca ctcgatcaac taaatacaag      4800
     aaagcgttta ttccaatatg gcgaaattaa tgttggaaac atttcaacga atattgaaat      4860
     aagaagacta aaatcttgta atttacggat gactgccagt gagctaatgt gttttgttca      4920
     ttttttgcca ttaatgatcg gtgacttggt tccacccaga aataaacact ggagaatttt      4980
     aataacattg ctggatataa ttgacttact cggaaaatct acttttgaaa cagaggacct      5040
     aataaaacta aaaatgttaa ttaaaaagca tcacggaggc tacataaagt tgtacggaag      5100
     tttaaagccg aagcaccatt ttatggtgca ttatcccaga gctattcgta tgtgcggtcc      5160
     actaaaatat ttgtggtgca tgcgattcga agctaagcac aaggaagcca aaatttattt      5220
     tcaaaatatt acatcgcggg ttaatccccc tcataccttg gcaattaagt caggtattaa      5280
     attttgtcaa tttttactaa gactcgagaa ttctgttgaa acactgtttg tcataaaaaa      5340
     cacattacca cttaaccacg acattgaaag ttgcttaagt aaaattgatt gtccgtttaa      5400
     tttacataat gctcagttaa gcaactcaat aatatataaa ggtatggatt ataaaagcaa      5460
     caattactta gttaaaaacg aaaaccctga ccaaatattt aaaatatttt tgtttgtctt      5520
     ggaaaatgaa tgtatttatg ttgtgagcag agttgttagt ttaaatgcat ttaattgtca      5580
     tttccaatct tatgaagttg gcgcggcaac agataaattt gaaattctaa gcattgataa      5640
     atttctcagc cctcctttac atgtacaccc aataaacaat ggaaaatcgt atattagaat      5700
     taagcgtatt taagtaaatt aacattttaa gatttgtaat gtattatgac tgtatcaacc      5760
     ttttaaaatc tcaagaactc aaaatagaat cgtattttaa aaaccatgat tttttgtcta      5820
     aataaatgtt acttctttgc ttttctttat tatattaaat tggtttttta aattaatttt      5880
     ctctcgtaga ttattggaca aaaaatgtat aatttttgta gttcataaat acaatatata      5940
     ttttttaatt ttaggacaac agtttcttaa tcttagaata aaattgcctt attttaggaa      6000
     tgtttgctct ttttttaagt acgtttgttc ttattgtaag aacaaaattt aagaaccaaa      6060
     atttcttaat ttaagaactt tgttcttaaa tttagactgg gttttttccc tcagtg          6116
//
ID   EnSpm-6_DTa repbase;    DNA;    INV; 8137 BP.
XX
AC   .
XX
DT   01-SEP-2021 (Rel. 26.11, Created)
DT   01-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8137
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (01-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1378..1603,2637..2758,2818..2916,3347..3559,
FT                 3754..4243,4401..4628,5049..7267)
FT                 /product="EnSpm-6_DTa_1p"
FT                 /translation="MKKKRSKKKPSDRCCMARVTLILIPGAVTSTTMSDYI
FT                 DPKSGALNLSNEIISEECLLKDFLSVRCISSGVLQYLLDANVTFESLKYLT
FT                 ESQIKEAIPPLGLRAEFQGKLFEWKAEKFGLDVSSCVTNLKSKDFSLSSTA
FT                 STIGSKVFSSALVDLIRETVSGRAILHYYQEHKNLTSSHRETLVNIIIEEV
FT                 IRCQTKLRTHDFNNLYKEICNVFPSEIVMEDFYYISRKGRANAGGKLFSKY
FT                 KNTAVKKLKLEQATSTATATSSDEQMEHDSTVMTAYKNALKKDSDESWPDV
FT                 IQKWLKTCQVRQTDLKVMGSIEFLSAWPKLAHPKAPELIDIDFNYIYPEKG
FT                 RLLSQNWDTFKQKIGKWYLENMSNAFCKQLLSKASKTKNIDSQDFLYTLLL
FT                 PAALPSHSRFLDGSGKRNRKVTLADAQESMVLRLTTINDYSRSIQEIINKY
FT                 YSAKLTVQPFIIVVEKCHLTTQNVSENETLIKPLKRLSLETSSVDDSCQET
FT                 VSSNPRNVSIHLEHLRRQALCFALKLYENNSMPRKRVVEIQEMISVLMSSV
FT                 SVAFEACLDKEINEDIRQLLRFCRDPFSDVRSEHRFFKILKDMKLYEDPKC
FT                 ITINEEISEVVIKGIPTLAPKSANICVMPLKFIFKSVFEIPTLLDETIQNG
FT                 KQFLSSNVIENIASGDIFRNKIKAFPSKTVIPYVLYFDDFQINNPLGSHKT
FT                 SICGSYFNFPTMPQYLLSKLDYIFSAAYILTSHLKEHGYERVFYNFVNQLR
FT                 ELEEGIDIVIEGKTHTVHFILVLLVGDNLALNSFLGFVQSFNANRYCRACR
FT                 RTKPQMQKDAFEIKDSLRNPENYKQDLETNNVKETGIKNTCIFQNLPSFNV
FT                 TDNFSFDMMHDVFEGVCEYDVCNILLSLIKEKVIEIDTINSRKSLFKYGEI
FT                 EIGNISVNLDMARLNFNLNMTASETNNFVHFLSLIIGDLIPEENVHWQFFT
FT                 ILLQIIDILSKSKVYKEDINRLKLLINEHHVRYVELYGPLKPKHHFLVHYP
FT                 TALEKCGPLKFIWSMRFEGKHRISKMYFNNTMSRINPAWSAAIKAGIKFSH
FT                 FLLNRENSFESIVSTEKSEIIDRKMALELNKISKFSNISFNEWEITSEMLY
FT                 KGTKYKTNYYLVLKDHPIEIYRIKNLIFKNDTVYIISIKVKVEGFNNHLQA
FT                 YEVGSANNNLHLEKLNEFISYPFHLYPMNNGKIYFRFKYI"
XX
SQ   Sequence 8137 BP; 2861 A; 1330 C; 1259 G; 2687 T; 0 other;
     cacccagaaa aaatagaccg aaaaaatcta agaccgaatt tcttacttta ataccgtttt        60
     gttcctattt tttttcaaga ccatattctt aaattgatac catacggtat taatttaaga       120
     ccagtagacc atttgtgtaa caaaaattac cgtttatttc tcattctcat accatttgtt       180
     cataatgaaa aaaatttggc agtttgtgta aaatattata ccgtttggtt ttagatctta       240
     taccataagt tcacaaatta aaaacagtgg accatttgtg taagaattaa taccgctcgg       300
     ttatacatac gtacataatt gtctccattt ttttttctta aatgactaac cgaaacatta       360
     cggtaaaaaa aagtccactt agttctaatt gttgtaccgt tttgttcaat ttaaatctaa       420
     aataaatttt tcctttcagg agaaatacaa attatatatg tacatatgta tgtatgtatg       480
     tatagagccc acctatgtac acatgtataa aatgtttgta aaaagcaaac aaaaatacta       540
     cattttattt aaaaattgaa aaaataaaaa cctagccatg tgacattaac aatatataaa       600
     tgtttaatat attttttatg tacataagta caaatatccg cagtgccatt gttttttcca       660
     actatatgta tgtatgtata tatataataa ctaaaaaaaa ataaatttaa caaaataaat       720
     aaatttcata cgatacaaat gcatttatgt atgtaagtac atgtcttcat gtacatacat       780
     atgtatacaa ttagttctga agatcgtttt tttttctaat acttttccca caagactatt       840
     tgtttgaata attttagctt tacaattgta cattgtatgc ctgtgccagc atgcacttat       900
     ctacatatgt agggtttgtg cacacttgca tacatatatt tatataaata agtcggtttc       960
     tgtacgtttt cttccttttt tcctttttat aactgttaat gcttgctgtc tcgcttttgc      1020
     ccgcgccgga ctcaaaatca aagaggcgcg tgccagcgtt cttgctatct cgcctctttg      1080
     caggcgacac acaattgctg acaaaatgtt agcggaaaat agctagttct agtaaggaag      1140
     ttaaagtcga cagagaatta caaaaaattg aaaaaatatt ttttaattac ttaaaatact      1200
     aaaagggttt tattttatta aacattaatt atattaatat atcaattaca ttaagttttc      1260
     taactaaaca taagactttt tttcattatg tcagtttact tcaattttct cactagaaat      1320
     agctatttcc cgctaacttt ctgtcagcac tagtcttctt gcttagcttt aacagttatg      1380
     aagaagaaga ggtcgaaaaa gaaaccaagt gatcgctgct gcatggcacg cgtcactttg      1440
     attttgattc ccggtgcggt aacatctaca acgatgagtg attatataga tcccaagtcc      1500
     ggcgcgctta atttaagtaa cgagattata agcgaggagt gtttgttaaa agacttttta      1560
     agtgtgcgat gcataagttc tggtgtactt caatatttac ttggtgagta taaaatctat      1620
     agtataaatt acttattctc taaaaaatca agtgcgaaaa tacatacata tgacagatga      1680
     aaaaaaacat gggagcaacc caattgaata aatgatgatt tgtgcagtga gaggtaaaaa      1740
     cattttagta catgtgtgcg cgcgtaatag catcctctaa ttttctgtgt atgtgtgtgt      1800
     gtgtgtaatg ctaaaaactg tacaaaacaa actgtatttt gcaaaaatcg ttaagcttta      1860
     tatgtgttgg taaaaatgca cgcgattatg agcatgaata taatgctcaa aatgcacaaa      1920
     aatcgtgcgc atttttacgg acacacatac atacatatac atatgtaaag ctgaacggtt      1980
     ttttaaactc aaacttgcat aaaactcgag gtttcagttt cattattgtc ttaatactct      2040
     aaaagtgacg cgtattttca cacgaacatg cacaaaattc gcgcgaattt ttaccaacac      2100
     acatacatgt gaacctaaac ggttttaaat ggaacttcgt gttttttaat tttctaaaat      2160
     aggcgcgtac tttaacacac acatgaacaa aacacgagtg tattttgaca tgcacatgca      2220
     caaaattcgc gcgaattttt actaacacac atacatgtga acctaaacgg ttttaaatgg      2280
     aacttcgtgt tttttcattt tctaaaatag gcgcgtactt taacacacac atgaacaaaa      2340
     cacaagtgta ttttgacatg cacatgcaca aaattcgcgc gaatttttac caacacacat      2400
     acatgtgaac ctaaacggtt ttaaatggaa cttcgtgttt tttcattttc taaaataggc      2460
     gcgtacttta acacacacat gaacaaaaca cgagtgtatt ttgacatgca catgcaaaca      2520
     tttacataca tatactattt tttttctttt aaaatggaaa tgctaaaaaa ctgaattgta      2580
     ttatttttct taatgggtta ttcttttctt tttttataat ccttcaacat tttaagatgc      2640
     aaacgtgacg tttgagtcac taaaatatct gaccgaatcc cagatcaagg aagcaattcc      2700
     gcctttgggc ttacgagcag agtttcaagg aaaacttttt gaatggaaag ctgaaaaggt      2760
     gagttaagtt aaacaaatcc tatttttaag ctaatttttt tttttgcata tttatagttt      2820
     ggtttggatg tttcttcgtg cgttacaaat ctgaaaagta aggacttttc cctttcttcc      2880
     actgcatcta caatcggcag caaagttttc agttcggtaa gtacaatttc ctgttttaaa      2940
     acgttgtgat tacttatttc taattatttt taataatatt atgtagataa gcgttaggat      3000
     aatataccga actaactaga tactattaaa gatactaaac ttcttaaata tatttatttc      3060
     tcgatttaat atacagcttt taataccatt aataataatt agtaaattgc atgaagtgcc      3120
     taaaaaaaaa cttgttaaat taataattat ataaacgtat acaaaaataa tttttctcaa      3180
     tcataaaatt gccgtaccgt aaattatagc caaaaaatta actttttagc ccacagtgca      3240
     tttccttaat ttatatttgg ttctccattt aatttgttta aataccattt taatatgttt      3300
     tattaagtta tattttttat ataattgtat tttatgttca tggtaggccc tggttgattt      3360
     aatcagagag acggtcagtg gaagggctat cctccattac tatcaggaac ataaaaattt      3420
     aacgtcaagc caccgcgaaa ccttggtaaa cattatcata gaggaagtca tccggtgcca      3480
     aactaaatta agaactcacg atttcaataa tttgtataaa gaaatctgca acgtgttccc      3540
     ttctgaaatt gtaatggagg taaatttaaa aaaattgtaa aaattattat tctcttattt      3600
     attattctat aatcgaaaaa taattgattt aaatctgata actggagcat gtgccctaat      3660
     ttgaaatcaa ttattttttt aaatgcgagg gtatatacat atagtttttt attattgatt      3720
     tgttgataca tttttcattt ttattattca caggatttct attatatttc acgaaagggg      3780
     agggcaaatg caggcggaaa actgttttca aagtacaaga acacagccgt gaagaagcta      3840
     aagctggaac aggcaacatc aactgcaaca gctacatcaa gtgacgagca aatggaacac      3900
     gactctacag taatgactgc atataaaaac gcccttaaaa aggattcaga cgaaagctgg      3960
     ccagacgtaa tccaaaaatg gttgaaaacg tgtcaggtgc gccaaacgga tttaaaagtc      4020
     atggggagca tagagttcct aagcgcttgg ccaaaattag cccatccaaa agccccggaa      4080
     ctaattgata ttgacttcaa ctatatatat ccggaaaaag gacggctgct aagtcaaaat      4140
     tgggacactt ttaagcaaaa aatcggaaaa tggtatttgg aaaatatgag taacgcattc      4200
     tgcaaacaac tcctctcaaa ggcttcgaaa actaaaaata ttggtaagaa aaatgtaaat      4260
     tattttaatt ttatattttt tttttattaa cataacacgt ttctaattta aaattaaaaa      4320
     ttttacgttg aaataaacat ctaaatcaaa taataaatct tggcaatcca tactcataat      4380
     ttccttacac ttttttacag attcgcaaga tttcctctac acgctcctct tgccagccgc      4440
     actgccctcc cattcgcgtt ttctcgacgg atcaggaaag cgcaacagga aggttacgtt      4500
     agcagacgct caggagagca tggttctccg cttgacgacc attaacgact acagcaggag      4560
     catacaggaa ataattaaca agtattactc ggctaagtta actgttcagc cctttatcat      4620
     tgtagtaggt atctccgagg aggacctaga agggttttat gtttttttta acaataagct      4680
     tcttaaaatg tcaacctttg ttgaaagtct agatctttgc ttcaaaattt ttcaaataat      4740
     gggccttaaa taccctgaag cgtgcagtga cgcctggcta tttttacaaa aaaatctata      4800
     taacattacc accaaatacg accttaagtc agcaaaagta actgctttga taaacgaatt      4860
     gcaaaatatg taaacaaaaa tgtacacatg cttcaaatgt tttaagggct ttgagcagcc      4920
     gaaacagctc attattcatt tgaaacgcga acactactac ttacgcgaaa atttgttaaa      4980
     aattcaatgt caccagaaaa actgttatca gatattcaca agcttcagga attttcgttt      5040
     acatttagaa aaatgtcatt taactacaca gaatgtttct gaaaatgaaa ctttaataaa      5100
     gcctttaaaa cgtctctcac ttgaaacttc ttcagtggat gattcatgcc aagaaacggt      5160
     ttcctcgaat cctagaaatg tttctataca cttagaacac ttacgaagac aagctttatg      5220
     tttcgcttta aaactctatg aaaacaactc aatgccaagg aaaagggtag tggaaattca      5280
     ggaaatgatt tccgttctaa tgtcaagtgt ctcagtagcg tttgaagctt gtttagataa      5340
     agaaatcaat gaagacatca gacaacttct tcgtttctgc agagatcctt ttagtgatgt      5400
     aaggtcggaa caccgatttt ttaagatttt gaaagacatg aaattgtacg aagatcccaa      5460
     atgtattacc attaatgagg aaatttctga agttgttatc aagggtattc caactctggc      5520
     tccaaagtcg gcaaatattt gcgtaatgcc tcttaaattt atttttaaat cagtttttga      5580
     gatccccaca ctcttagatg aaacaataca aaatgggaaa caatttttaa gtagcaacgt      5640
     tatagaaaac atagcaagtg gagatatttt tagaaataag attaaagcct ttccaagcaa      5700
     aacagttatt ccttacgtat tgtatttcga tgattttcaa attaataatc cattaggaag      5760
     tcataaaact tcaatttgtg gatcatattt caattttcct accatgccac aatatctttt      5820
     gtcgaaactt gactacattt tttcagccgc ttacatttta acctcacatt taaaagagca      5880
     tggctatgaa cgcgtatttt acaattttgt taaccagtta agggaattgg aagagggtat      5940
     tgatattgta attgaaggca aaacacatac tgttcatttc atattagttc tactagtcgg      6000
     tgacaatcta gccctgaata gctttttagg tttcgtacag tcttttaacg ctaaccgata      6060
     ctgtcgtgct tgtaggagaa ctaagcctca aatgcaaaag gatgcattcg aaattaagga      6120
     cagtttaaga aaccctgaaa attataaaca agatttggaa acgaataacg taaaggaaac      6180
     aggtatcaaa aacacatgta tatttcaaaa tcttcccagt ttcaatgtca cggataactt      6240
     ttcttttgac atgatgcacg acgtgttcga aggcgtttgt gaatatgacg tgtgtaacat      6300
     tttactgtcg ttgatcaaag aaaaagttat tgaaatagat actatcaaca gccgaaaatc      6360
     gttgtttaag tacggagaaa ttgaaatagg taatatatct gttaacctag acatggctag      6420
     acttaatttt aatttaaata tgacagccag tgagacaaat aattttgttc actttctttc      6480
     attaataata ggtgatttaa taccagaaga aaatgtacat tggcaatttt ttactattct      6540
     tctgcaaata atagatatat tatctaaatc aaaggtatat aaggaggaca taaatcgttt      6600
     aaaattactt attaatgagc atcacgtaag gtacgtcgaa ctgtacggcc cactaaagcc      6660
     aaaacaccac tttttagtgc actacccaac tgccttagaa aagtgtggac cccttaaatt      6720
     tatttggagc atgaggtttg aaggaaagca ccgaatttca aaaatgtatt ttaataacac      6780
     aatgtcccgt ataaatccgg cctggtctgc agcaataaaa gctggaatta aattttcaca      6840
     ttttttgtta aacagggaga atagttttga atcaatagtt agcactgaaa agtcggaaat      6900
     cattgatcga aaaatggcat tagagttaaa caaaatttcc aagttttcaa atattagttt      6960
     taacgaatgg gaaattacca gtgaaatgtt atataagggc acgaaataca aaactaacta      7020
     ttatttagtt ttaaaagatc atcctataga aatatacaga attaaaaacc ttatttttaa      7080
     gaatgatact gtttatataa taagcataaa agtaaaagtg gaaggtttta ataatcactt      7140
     acaagcatac gaagtcggct cggccaacaa taatttacat cttgaaaaac ttaacgaatt      7200
     tataagttat ccgtttcatt tatatccaat gaataacgga aaaatttatt ttagatttaa      7260
     atatatttaa taagcactct ttaatgtaaa accattaaaa tatatttaat aagtacacca      7320
     tttaaatata tttaataagc acattttaat gtgtaacctt gtgttcaacc gttgtaaatt      7380
     acaagtctaa ttaaattata ttggatttaa aaattcaatt aaataaaagc ttgaaaacaa      7440
     ttaaaccaaa ttgttcttat tatacaaacc catggttctc gacaaacgat caaaaggtcg      7500
     caaacgataa caataccaat tggtcttcct ttaagaaaat cttgttcttt aagcaagacc      7560
     aaaaaggggt tagccccacg ttccccaagt aataccattt ggtcttaatt taagacaaat      7620
     ttgttcttaa gtatctgaga ctaaattgtt cttaaggtaa gaccaagtag ttcttagccc      7680
     cgcgttcccc aagtgatacc atttggtctt aatttaagac aaatttgttc ttaagtatct      7740
     gagactaaat tgttcttaag gtaagaccaa gtagttctta gaccctcggc cgagaagtaa      7800
     taccatttgg tcttaattca agccaaattt gttctgaagt ttatgaggcc attttgttcc      7860
     aaatatgtta ccatatggtc ttaaatcgag tcagaatcgt tcttgaataa ataataccta      7920
     gtggtcttaa tttcagaaca aagtggtact agggtaagac catttgttat taaaatttaa      7980
     gtaagtttcg ttcttggagt aagaacagcg gttttaaaaa ttcgtttgaa aaatgatacc      8040
     ataaattctt ataatgatac caaacggttt aaagctattt ttgagactca aacagacacg      8100
     tttttagaca caatcagaac aattttttcc ctgagtg                               8137
//
ID   EnSpm-7_DTa repbase;    DNA;    INV; 5120 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5120
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1887..3803,3787..4332)
FT                 /product="EnSpm-7_DTa_1p"
FT                 /translation="MKFQCFRCHKRFANEDILISHFKIDHFLKSKNLKIEC
FT                 MQNTCSLSFNNFKSFKRHLQWAHKTEADFELSNQPTLEESQVNIFSVLPFF
FT                 ENGLEPSLEESRVEIFSVLPFFENCLELQYVHKIDLRKQVVMFSLSLYGQN
FT                 YLPRKQVLEYQEITTVLLSSIATAVEDQFSHNATGIPQEPEMILNFCKNPF
FT                 EDIKSEYRLLKILTKMNLYREPQAVSIDKKIQKKISQGNPRMDAQSHKLYL
FT                 MPLIFMFHEIFKIPKLLELTLINAQNSFMKNTFSNFASGEIYQQQKSNFSD
FT                 TDFMIPYVLYFDDFEIDNPLGSHKISICGAYISFPTMPRYLLSKLQYIFPA
FT                 AFILTADIKEYGIERSTYPLVQKLKELEQGILVKTGSKTVKVYFSLGVVIG
FT                 DNLAVNSVNGFVRSFNSTRFCRVCKRSKQETQFDSHEKKDSLRNKSNYNSD
FT                 LLENNVKLTGVSSKCIFNDLDNFHVTERFSFDIMHDIFEGVAKYDVCKVIM
FT                 KLIKSKVLTLSTLNHRKQLFPYGEIEAGNQSNSLELPRLKNCNLNMSASEM
FT                 KSFLHFLPLMVGDLVPTDNVDWQLILILLKIVDLLFKPELVPEDLSKVKEF
FT                 VKSHHVLYTQLYGALKPKHHFMVHYASAIQKRGPLKYALRVNMRFESKLRE
FT                 SKLYTHNIHSRINPPCSIAKKAALKFAKFLTSHEVSVEPIFSFSHSLNVAL
FT                 KNIDYFDRIVSCEKNNTLFQICNLFKQVTYKGTIYKTTYFLVAGEVQTKLF
FT                 KILSFLNFGNNVFVVCEEIHLLSYDNHFCAYQVGNSTENVYVKNIQEFISL
FT                 PINVYTLNNSKSYIRLKYV"
XX
SQ   Sequence 5120 BP; 1875 A; 771 C; 764 G; 1705 T; 5 other;
     cactcagaaa aaaacgcatc ctaaatttga gcgcgattta tacttgattt cggatagtat        60
     tttttgggct tgttttaaga atgagaatgt tggacgttct tgaattaaga ataaatcatt       120
     cttaaaaccc aaattatccg aaaaagggct tgtttcaaga acattattcg attaacagga       180
     ccaaacaagt acgattcctg cttaacctaa gtatactata ttctgaaaca aaaatgtttc       240
     ttggagcgca cgaacattct taatgtgatc acataaagta cttaatttca gaatataagg       300
     cttaagtatt cttaaaatag gaatgaattc ttctcattag tactaccaaa attcaaagta       360
     aacagtatat caacaagtac agtttgtgct taaatcaata atataacgca cttcttacgt       420
     ttgctgatga atatgctgag cgttcttgaa taaagaataa accattctta aaacccaaac       480
     tatccgaaaa tgttcttgat tcaaaaacat tagcaccaca aatcaagtac aatttctcct       540
     aaaatatatt ctgaaacaaa tgtttcttgg taaggacgac cattcttaaa atgattttta       600
     aaagtattta ttttcataaa aatctggctt tagtattctt aaaataggaa tgaattattc       660
     tcattagtag taaaaaaatt aaaaaataat taagtacagt ttgtgcttaa gtcaataaca       720
     taacgcactt attatgtttg caaaaaaaga acaaattagc tcttcactaa agaagaccaa       780
     aatataaaaa acatatttcc catttcgatc gcaaatataa aaaatttaat aaaacagaac       840
     ctcaaaacaa acacattttg tgcttagatc ggagaaagaa atatacaaat aataattgtc       900
     tttatataga tatgtactct gaaacgtaat acggaaatac ggctggattt tccatacagt       960
     ccaatctacg cctgaccgct tatacacatc gacaactgtg caattcagtt gtaaaaaaat      1020
     tgaatgtttt tctataatgt gagcgatggg ataaaaaata tcgatagttg gaagtttgac      1080
     taaaattaaa agtatacatt tgaaataaaa cataaaagaa agtatagaga actctcttaa      1140
     caataaccta tttaataaat cacctattgt tgttacggtt tttcaccact tttctagctg      1200
     atttattgta caactcaaat ccagaaatag agtttaaatt cacaaacatt tatagaaaaa      1260
     gcgcaatatt attattaata taattatata taaataaaat tttaattctc aaaacgttta      1320
     acttaataca tacatataag aggtaaaatt tactatcgaa caaaaatctc gatatcaaca      1380
     cgagatggca gatatttgat atatcgatac aattgaatgg tagccccagc tctagaaagg      1440
     agccattcac ttttaaactg attgcgtagt gtcaaagtta tgtgaaaatg ggtgcaaaaa      1500
     gtgacgcgaa gctcgaagag tttttaaaag aatatgaact ggaagatgtt cggcagtacc      1560
     tcgaaagtaa gttataataa tgcgatataa atgtgtaata attttaaatt gaagtgaagt      1620
     aataattgtg cacttagaat tcctgcgaaa agcacagcac gtgttttttt tccttgaaaa      1680
     ctactacaga acaaacacat ccaagcaata ctaagaatta aatatgtaca tagacccata      1740
     acgcgaaaag tgcgcacttt ttatgttttt ttttttttga aattgatact aaatttgata      1800
     aaaagtctgc aaatattacg gctttaatgg actatttaaa taaataattt taagtcacat      1860
     ttcacaattc ttataagcaa gtcaagatga agtttcaatg tttccgatgc cacaaacgct      1920
     ttgcgaatga ggatattctt atatctcatt ttaaaattga tcatttccta aaatccaaga      1980
     atcttaaaat agaatgtatg caaaatactt gttctttgag ctttaataat tttaaatctt      2040
     tcaaaagaca cttacaatgg gcacataaaa ctgaagccga tttcgaatta tctaatcagc      2100
     caactttgga ggagtcacaa gttaacattt tttctgtttt gccctttttt gagaatggtc      2160
     ttgagcctag tttagaagag tcacgagttg aaatattttc cgttttgcct ttttttgaga      2220
     attgtcttga gcttcaatat gtacacaaaa ttgatctcag aaaacaggtg gttatgtttt      2280
     cattgagttt atatggccaa aactatttac cgcgaaaaca agtactagaa tatcaagaaa      2340
     ttactacagt ccttttgtct tcgatagcca cagctgttga agatcagttt tcccacaatg      2400
     ctacaggtat tccacaagaa cctgaaatga ttttgaactt ttgtaagaac ccttttgaag      2460
     acattaaaag tgaatatcgt ttattgaaaa tattaacaaa aatgaatcta tacagagaac      2520
     cacaggcagt gtctattgat aaaaaaattc aaaaaaaaat ttcgcaaggg aaccctagga      2580
     tggacgctca atctcataag ctttatttaa tgcctcttat ttttatgttt catgaaattt      2640
     ttaaaattcc taagttgtta gaactaacat taattaatgc ccaaaacagt tttatgaaaa      2700
     acactttttc caattttgca agtggtgaaa tataccaaca acagaaaagt aacttcagcg      2760
     acacagattt tatgattccg tacgtattgt attttgatga ctttgaaata gacaatccgc      2820
     tgggaagcca taaaatatcc atttgtggag cttatattag ctttccaaca atgcctagat      2880
     accttttatc aaagttacag tacatatttc cagctgcgtt tattttaaca gctgatataa      2940
     aagaatacgg aatagaaagg tctacttatc cattagttca aaagctgaag gaactagaac      3000
     aaggcatttt ggttaagaca ggatctaaaa cagttaaagt ttatttttca ctaggtgtag      3060
     ttatagggga taacttagca gtcaattctg tgaacggatt tgttcgttcg tttaactcga      3120
     ctcgattttg tcgtgtttgc aaacgatcga agcaggaaac tcaattcgac tcgcatgaaa      3180
     agaaagattc attaagaaac aaaagtaatt ataattcaga tttgctcgaa aataatgtta      3240
     aactaacagg agtcagttct aagtgtatat ttaatgattt agacaatttt catgtaactg      3300
     aaagatttag ttttgatatt atgcacgaca tatttgaagg agtggcaaaa tatgatgtgt      3360
     gcaaagttat aatgaaatta attaaatcaa aagttctaac attaagtact cttaatcata      3420
     gaaaacaatt atttccttac ggtgaaatcg aagcaggaaa tcagtcaaac tccttagaat      3480
     taccccgctt aaaaaattgt aatctgaaca tgtctgcgag tgaaatgaaa agctttcttc      3540
     attttttgcc cttaatggtt ggcgaccttg ttccaactga taatgttgac tggcaactta      3600
     tattaatttt attaaaaatt gttgacttac tatttaagcc agagctagta cctgaagatt      3660
     tgtcaaaagt aaaggagttc gtaaaatcac atcatgtttt gtacactcaa ttgtatggag      3720
     ctttaaagcc caaacatcat ttcatggtgc actacgcatc ggcaatacaa aaaagaggcc      3780
     cactaaaata tgcgcttcga gtctaaatta agagaatcca aattatatac tcataacatt      3840
     cattccagaa tcaatccgcc atgttctatt gctaaaaagg cggctttaaa atttgctaag      3900
     tttttgacaa gtcatgaagt ttctgtggaa ccaattttct ctttttctca tagcttaaat      3960
     gtagctctta agaacattga ctattttgat agaattgtga gctgtgaaaa aaacaatact      4020
     ctttttcaaa tatgtaatct gtttaagcaa gttacgtata agggtacaat atataagaca      4080
     acatatttcc ttgtggctgg agaagtccaa acaaaattat ttaaaatttt aagtttctta      4140
     aattttggta ataacgtttt tgttgtttgc gaagaaattc atttattaag ttatgataac      4200
     cacttctgtg cataccaagt tggaaatagc actgaaaatg tttatgtaaa aaacattcaa      4260
     gaatttatat cccttccaat taatgtctat actttaaata attctaagtc ttacataagg      4320
     ctgaagtacg tataacatat agcgcaagtt acaaaactaa tgtatgtatt atttcctttt      4380
     cttaaatttc cagtattgta ctacaataag aatcaacaca ctcaatgatg cgatacatta      4440
     aaacaataaa atcaaacaaa aattaaataa aaaacagttt tttatttctg gaagcctaat      4500
     gccttcttag ttgaagaatt ataagttctt atgtaaagaa ctttttcggc tggattatgg      4560
     aattttaaat tctttaatga agcatgattt gttcttatta taagaccaag ttatgttaaa      4620
     gatgatgcat tttacaacat taaatgagta cattctgttc ttgactgtag tatgaataat      4680
     tcttttctga agamtaaatc cagtttaaaa taagaattat acatttttga tgtaagctgc      4740
     atatcatctt gatataagca twggccatgg ttcgtttaag aacattttgg acctgtttca      4800
     atattaaata ttgctatatt taagaattat ttatatttca ttttagtwca atatgtactt      4860
     gatttgagaa tttgtaaact taattcaagt gcaattcata cttaaataaa gtagtactta      4920
     tacttsaata aagaatattk cctacttaaa tcaagtagaa ttcattcttg attttgccga      4980
     aaatgttctc aaattaagaa tgtcggttta agaataaaac gttcttgaaa tgaaaaaaca      5040
     agcccatttc gtacctgtcg ccctttcaag accatttggg cttgaaacaa gcacaatgtg      5100
     cttggttttt tttctgagtg                                                  5120
//
ID   EnSpm-8N1_DTa repbase;    DNA;    INV; 2130 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-8N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2130
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6223-6223 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 2130 BP; 695 A; 342 C; 382 G; 711 T; 0 other;
     ccctgtagtt ctcaaggggg ccggtggcac tttcggggta gaaaagggat cgaccaccca        60
     gtggtccctt aagggtcaat aggtggcgtg tgtatttttt acaagagcaa aagagttatc       120
     ggagagtgaa cacttctatg tgaacacttc tatatgagtt aaaaaaattg taaaatgaaa       180
     tttttgacaa gtatataatg attttaataa cgaatacaac tttattttgt ttatataaaa       240
     aacaaattta aaaaaagtta aaataataaa ataaaaactt gataatgaga taaaataaaa       300
     taataaatga tagaatttta tttcttttta tattatttat atttaataat gagcaattta       360
     gctgcagcaa tatttttaac aatagcggtg gttcagtagc aaaacgtttt ctttccttcc       420
     ataacaagcg gattttattg gtgcttagat atataaaata aatatataag tacctaattt       480
     tatatacata gaactaaaca aaaataatat tagcgaatgt ttttattgcc atcgattata       540
     cgatatcggt agtcgcaata ttaatcgtaa cggattgcca taactaccca accccgctac       600
     catcactagc ccaacgtttg cgccaaattt tgtaaacatt gtatttaatt tgtcttattg       660
     tgcatttaaa gtgttatatt ttgttgtgat ctgaagtgtc gtcaacaggt gagtaacacc       720
     atgagttgtg caagtgaaat acctaataat gtgtgatatt tagccatgaa cagcaacagg       780
     cacattcgtc gatttgttaa agaggagaag gagaaatagt ggtgcaaagg actcctacgt       840
     aagtcttttt tctttgatat aaatatttta gtgaaatttt cttccttttt agattaaagc       900
     catgagatcg ttgttgctgc cagaaggggg tttaaaaaac ttgcggaggg ttctcacgga       960
     tgagtttgtt gtgggattta atgttaacca ggcctttctg gaaaaaaaag ccgtaaactc      1020
     ctttacacat ttctatggtg cacttcacgg taggttattt ttataactgt attttttata      1080
     atacacttag tttcttgatt caatttcaat ctatttactt agaatgccat ctgtctttaa      1140
     tcctatttct ttctgtcttt ttctgctttt cacttttaaa acatggtttg atgtaaacag      1200
     gcttgtataa caaaatctaa aaatatatat ttaaacccat gcagagggaa ttataattta      1260
     gtccagaagt ttgttacgca gtaaaggaga ccttttcaaa cctataaagt aaatccattt      1320
     aaccatgtcc gtctgtctgt cggttcaagt ttcaaaagcg tgaaataagt ctacatttaa      1380
     ctgttggtta ttcttatttt atatttatgc ttttctagtc acaattttat tcctgaaagc      1440
     tgcaagggta ttaaaacttt ggcttgccga agttagtttc tgttctcatt ttattttaaa      1500
     acactaaaat cttatttttt tttagatatt gtttcagaat ctggtaatgc agaaatattg      1560
     attcccaagg caattcaatt gcaaaagaaa cgatttttta aaaataaatc caaatcaaat      1620
     aataacaaca atgaggcact caacaaaaac gtgtcagcag aggaatttgt tcaataaata      1680
     taaattaaaa aaatagaaaa attgtctact tataatacaa taaattaatt taacaaaaag      1740
     tattttttct tgggaagttt catagcattc agcttttttg gtattgaaaa caccaacccc      1800
     atttcatacc ccttttcgcc acaaaaggga ccgataggtg gtcccattta ataccccttt      1860
     tcgccacaaa agggaccgat aggtggtccg atagatggtc cgataggtgg ccccttttgt      1920
     ggcgaaaagg ggtataatat gggaccacct atcggtccct tttgtggcga aaggtaatgc      1980
     agaacttcgc catatgacca ccgcctagga catgccgtgg taaaagtgga tagaaattta      2040
     cattgcgggt ggtatgaacg ggagttagtc ccaagccccc ggtgtatggc gatttcgcta      2100
     gttcgggacc agtcccggcg aactacaggg                                       2130
//
ID   EnSpm-8_DTa repbase;    DNA;    INV; 4489 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4489
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6210-6210 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           642..2519
FT                 /product="EnSpm-8_DTa_1p"
FT                 /translation="MNSNRHIRRLIKEEKEKCQKRFREIEQAQPPSELEVS
FT                 DSWAFNTADFDNHMEALETEELRVETNDGPPVRNSGLLNDKLRQWHNKHRV
FT                 SRECAKDLIKILREENLDVSSFYKSSCPSKPIISRVAGGQYLHVGVKNQFM
FT                 KLLDCYQSENQLVIDINIDGLPIFKSSRAQLWPILIRVNNFVNTPVICVGV
FT                 FLGYTKPNNCEEYLSPLFEELSGIIENGMEKNGTFINMKIRAIVCDAPARA
FT                 FISGTPGHTSRHGCAKCTQVGKKIEGTLTYCTESGNLISDQDFLDRKYPDH
FT                 HQAEYLAKKTVLENLNVGMVTQIPLDSMHLVELGVMRKFLKGLISNSVSIR
FT                 VSNREKDTISNRLINMRRYIPNEFARKPRSLVDLNHWKATEFRQFLLYSGP
FT                 IALKDCVHHDVYYEFLLLHCSYRFLCCSQQREANLNLCQAMLNYFVKNFAV
FT                 LFGQNSISYNIHSLVHLKETVQHVGDPISGSCYSFENYLQSLKKMVKKPSL
FT                 ILQQIHRKLSEQIYEPPLVQEYAKIVGKKCNFKGCTLTCKSPDNFCFIKKG
FT                 IPIKIIELDSQGAAIVGKRFTNLDRFYDLPVVSTCLGIYFAKDMSMQEEER
FT                 FPLENLECKAVVIPGESGMVIFPMLHFY"
FT   CDS           join(2658..2709,2771..2842,3043..3212,3267..3420,
FT                 3897..4045)
FT                 /product="EnSpm-8_DTa_2p"
FT                 /translation="MATPSKISKRSFTDFSFDEPFQPPSVCTNCCEVKKQI
FT                 AEINEKLEEIILSLAEQKIIVSQLVRQRVENTNVAKCFPIKDEEALNIVNQ
FT                 NINSCAKDSYIKAMRSLLLPEGVLKNLRRILTDEFVVGFNVKGLSGKKALN
FT                 SFTHFYGALQDIVSESGNAEILIPKAIQLQKKRFFKNKFKSNNNNNEELNK
FT                 NVSAEDFVQ"
XX
SQ   Sequence 4489 BP; 1475 A; 690 C; 827 G; 1497 T; 0 other;
     ccctgtagtt ctcaaggggg ccggtggcac tttcggggta gaaaagggat cgaccaccca        60
     gtggtccctt aagggtcaat aggtggcgtg tgtatttttt acaagagcaa aagagttatc       120
     ggagagtgaa cacttctatg tgaacacttc aatatgagtt aaaaaaattg taaaatgaaa       180
     tttttgacaa gtatataatg attttaataa cgaatacaac tttattttgt ttatataaaa       240
     aacaaattta aaaaaagtta aaataataaa ataaaaactt aataatgaga taaaataaaa       300
     taataaatga tagaatttta tttcttttta tattatttat atttaataat gagcaattta       360
     gctgcagcaa tatttttaac aatgttttta ttgccatcga ttatacgata tcggtagtcg       420
     caatattaat cgtaacggat tgccatcact acccaactcc gctaccatca ctaacccaac       480
     gcgtgcgcca aattttgtaa acattgtatt gtcttattgt aaattgtctt attgtacatt       540
     taaagtgtta tattttgttg tgttctgaag tgtcgtcaac aggtgagtac cgccatatat       600
     gttgtgcaag ttaaatccct aataatatgt gatattcagc catgaacagc aacaggcaca       660
     ttcgtcgatt aattaaagag gaaaaggaga aatgtcagaa aagatttagg gaaatagagc       720
     aagcgcagcc gccaagtgaa ttagaagtgt ctgatagttg ggcattcaat acagcagatt       780
     tcgataatca tatggaagcc ttagaaacag aagagttacg tgtagaaact aatgacggac       840
     ctccagtccg aaatagtggt ttgttaaatg acaagcttcg ccaatggcac aataagcata       900
     gagtctcccg cgaatgcgcc aaagacctga ttaaaatttt gcgcgaagaa aatttagacg       960
     tcagttcttt ttataagtct tcttgtccct ccaagccaat tatttcgcgg gtagcaggtg      1020
     gccaatactt acatgtagga gttaaaaatc aatttatgaa gttattagac tgctatcaga      1080
     gtgaaaatca gttagtgatt gacattaata tagacggact gccaattttt aaaagttccc      1140
     gggcgcaact ttggcccatt ttgataagag ttaataattt tgtaaatacg ccagttattt      1200
     gtgtaggagt ttttctgggg tacacaaaac caaacaactg tgaagaatat ttgagtcctt      1260
     tgtttgaaga attgtctgga ataattgaga atggcatgga aaaaaatggg acttttataa      1320
     atatgaaaat tagggcaatt gtttgcgatg ctcctgctag ggcttttatt agtggaacac      1380
     caggtcatac ttcccgacat ggttgcgcaa aatgtaccca ggtggggaaa aaaatagagg      1440
     gtactttaac atattgtaca gaatcaggaa atctaattag cgaccaggat tttttagata      1500
     ggaaatatcc agatcatcac caggccgaat acttggcaaa gaaaaccgtc ttagaaaatt      1560
     taaatgtggg catggtgaca caaattcctt tagatagcat gcacctcgta gaactaggag      1620
     taatgcgtaa atttttaaag ggactcataa gtaatagcgt ttcgattaga gtttccaata      1680
     gagaaaaaga taccatttca aataggttaa taaatatgcg tcgatatatc cctaatgaat      1740
     ttgcaagaaa gcccagatcg ttagttgatc ttaatcattg gaaggctact gagtttcggc      1800
     aatttttatt gtattcagga ccaattgctc ttaaagattg tgtccatcat gatgtttatt      1860
     acgagtttct acttttacac tgttcgtata ggtttctgtg ttgttcacag caacgagagg      1920
     caaacctaaa tctatgccaa gcaatgctaa attattttgt taaaaatttt gctgttttat      1980
     ttggtcaaaa tagtatttcg tataatattc atagtttagt tcatttaaaa gagacggtcc      2040
     agcatgtagg tgatccaatt tctggatcct gttattcctt tgagaattat ctacaatctt      2100
     tgaaaaaaat ggtaaaaaaa ccgtcattaa ttttgcagca aattcacagg aaattatcag      2160
     aacaaatata tgaaccacca ttagtgcaag aatatgccaa aattgtaggt aaaaaatgta      2220
     attttaaggg ttgtacgctt acttgtaagt cacctgataa tttttgtttt ataaagaaag      2280
     gaattccaat aaaaattata gaattagaca gtcaaggggc agcaatagta gggaaacgat      2340
     ttaccaattt agacaggttt tatgatctac cagtagtttc aacatgttta ggtatttatt      2400
     ttgctaaaga tatgtctatg caagaggaag aaagatttcc tttagaaaat ttagagtgca      2460
     aggccgttgt tattccaggg gaaagtggga tggttatttt tcccatgctt catttttatt      2520
     agggaagttt aaaaaaataa atattaatgt tgtagttttt tgtttttgtc gatttgtttg      2580
     ttttgtcaga tgtgtcggtt tcattggttt tgttagtttt tatttatatt ttttgaagat      2640
     agaatagaag aacagaaatg gctactcctt caaaaatctc gaagcgcagt ttcacagatt      2700
     tttcctttgg tatgtataat ctcattacga ccgaatttgt tacgtaaagt acattcgttt      2760
     tccatttcag acgaaccttt tcaaccgccg tcagtgtgca caaattgttg cgaagttaag      2820
     aagcaaatcg cggaaataaa tggtaaaatg ttaaactttt tgacgttaaa ttttgttttg      2880
     cactataaac cttagacatt tttttgtttt taaaaaatgt aaaataattt ttatttaatt      2940
     tatattattt ttaaataatt gtttcagtga tgtttctttt cttaaatatg tatatttttt      3000
     ccttgctaaa tgctcttata atcaaatttt aatttctttt agaaaaactt gaggaaataa      3060
     ttctttccct tgcggaacaa aaaattattg tttcgcaact ggtgcggcaa cgagtggaaa      3120
     acacaaacgt ggcgaaatgt ttcccaatta aagatgagga ggccctaaat atagtcaacc      3180
     aaaatattaa tagttgtgca aaggactcct acgtaagtct tttttctttg atataaacat      3240
     tatattgaaa ttttcttcct ttttagatta aagccatgag atcgttgttg ctgccagaag      3300
     gggttttaaa aaacttgcgg aggattctca cagatgagtt cgttgtggga tttaatgtta      3360
     aaggcctttc tggaaaaaaa gccttaaact catttacaca tttttatggt gcactccaag      3420
     gtaggttatt tttataactg tattttttat aatatactta gtttcttgat tcaatttcaa      3480
     tctattttct tagaatgcca tctgtcttta atcctatttc tttcagtctt tttctgcttt      3540
     tcacttttaa aacatggctt gatgtgaaca ggcttgtata acaaaaacta aaaatatata      3600
     tataaaccca tgcagaggga attataattt agtccagaag tttgtaacgc agtaaaggag      3660
     accttttcaa acctataaag taaatccatt taaccatgtc cgtctgtctg tcggttcaag      3720
     tttcaaaagc gtgaaataag tctacattta actgttggtt attcttattt tatatttatg      3780
     cttttctagt cacaatttta ttcctgaaag ctgcaagggt attaaaactt tggcttgccg      3840
     aagttagttt ctgttctcat tttattttaa aacactaaaa tcttttttct tttcagatat      3900
     tgtttcagaa tctggtaatg cagaaatatt gattcccaag gcaattcaat tgcaaaagaa      3960
     acgatttttt aaaaataaat tcaaatcaaa taataacaac aatgaggaac tcaacaaaaa      4020
     cgtgtcagca gaggattttg ttcaataaat ataaattaaa aaaatagaaa aattgtctac      4080
     ttataataca ataaattaat ttaacaaaaa gtattttttc ttgggaagtt tcatagcatt      4140
     cagctttttt ggtattgaaa acaccaaccc catttcatac cccttttcgc cacaaaaggg      4200
     accgataggt ggtcccattt aatacccctt ttcgccacaa aagggaccga taggtgttcc      4260
     gataggtggc cccttttgtg gcgaaaaggg gtatgaaatg ggaccaccta tcggtccctt      4320
     ttgtggcgaa aggtaatgca gaacttcgcc atatgaccac cgcctaggac atgccgtggt      4380
     aaaagtggat agaaatttac attgcgggtg gtatgaacgg gagtcagtcc caagcccccg      4440
     gtgtatggcg atttcgctag ttcgggacca gtcccggcga actacaggg                  4489
//
ID   EnSpm-9N1_DTa repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   17-NOV-2021 (Rel. 26.11, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-9N1_DTa.
XX
NM   EnSpm-N27_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-681
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4685-4685 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 681 BP; 217 A; 121 C; 141 G; 202 T; 0 other;
     cccagcggcg aaaattgcca ttacaaaatg gattacgaat gcattacttc tcctctcgta        60
     atagagaaac aatggattac aacatggatt actttgccat aggcatggcc gccttgtaat       120
     gtggtcggga gacaatttgc attactagta atgggaaaag tatgctaggg ccgaatcacc       180
     ttcgggtctc cattacgaat tcaatatact tttccgaaat tgtaatgcaa aatgtagacg       240
     gactagagaa aattcaacat acaatttgaa aaacgtatgc tgagttgtaa tgcatgttca       300
     tttatgaaaa caaaaaatat tctttcctca tgtaggaatt gaacatgggt attattgtat       360
     aatggatgga aaggctaacc gctcggccat tgtctgtgct ttttttagtt cgtcaaacta       420
     tatttagaat gcatgctgtt attattaaag ttccgaagct caaacgtgag ggaggggaaa       480
     cgaaaaacga acacatagac aataattttt atgtgtgttt gtgatttttg acgaagggaa       540
     atcgttagcg aacgaaaaaa cgaagtcata ggagccctga ttacaacttc tctaacgaaa       600
     agcagcgata gtaatcggtt acattttctt tacatgtaat gcattttttc tccagacccc       660
     attcgcctgt tcgccgctgg g                                                 681
//
ID   EnSpm-9_DTa repbase;    DNA;    INV; 3504 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; EnSpm-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3504
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(334..1653,1657..2028)
FT                 /product="EnSpm-9_DTa_1p"
FT                 /translation="EIYIKDQIRDWYLEYSPGRSCVRALLKILVSSGIEVP
FT                 SSVESLVNRGPKPITRTVAPGTYLHLGIENYILNNKHVFENSFDLRLDVGI
FT                 DGLPLFKSSRNGLWPIMGHFRNVKDSEVFLIGTFLGKEKPANPNVFLTDFV
FT                 HELQRIEVDGVQVGMTNLKVKCHAFICDAPAKSFICGLKGHTSFHGCMKCT
FT                 QVGTRLGTHHTAFSTMRAEKIYDCDYTSRKYLEHHHNYFLENEMILEKLGI
FT                 GMITQFPLDPMHLIDLGITKKIIKMIYTNSSTNFKFSTSQKEELNRRSLSL
FT                 ASFIPSEFQRKPRSFDEVNMWKSTEFRLFILYSDIVLLKDLIPEDYYYNIL
FT                 LLHSGYRLLLSKTDYTQNINVAEQIFEYFVSTFATIFGHQNVSFNVHNLLH
FT                 MCECVKEIGHIQDFTAYKFENFLQHLKKSIKSPSKILEQIQNIYSNRSKTV
FT                 ENKTGFIKNKKGDIVKFVNENYILTTIPPNNYCCISPSYPAKVIRFVKNEE
FT                 HEKFVQCQRFADPQPFYTTPINSQIIGIVKTSQSVLEEELVHISQVSYKNI
FT                 CFPCKEFLVFLPILHCK"
XX
SQ   Sequence 3504 BP; 1247 A; 558 C; 568 G; 1131 T; 0 other;
     cccagcggcg aacaggcgaa tggggtctgg agaaaaaatg cattacatgt aaagaaaatg        60
     taaccgatta ctatcgctgc ttttcgttag agaagttgta accagggctc ctatgacttc       120
     gttttttcgt tcgctaacga tttcccttcg tcaaaaatca caaacacaca taaaaattat       180
     tgtctatgta ttgtgtgtaa aggaaaaatc attcgttttt tcggccgagc aggtgttgtt       240
     gtaattctat ttcctttacc ttccctttcg tttttcactt gacgttttaa gttcatgaaa       300
     agcggtgcgt gtgcggaaca aatcgaaaag taagaaatat atattaaaga ccaaattcgc       360
     gattggtact tggaatatag tcctggaagg agttgtgtcc gtgcgttatt gaaaattcta       420
     gttagttcgg gaatagaggt tccaagctct gtagaatcat tagtaaatcg tgggcccaaa       480
     cctatcacaa gaacagtggc tcctggcact tatttacatc ttggcattga aaattatata       540
     ttaaataaca aacatgtttt cgaaaatagt tttgatttga gattggatgt cggaatagat       600
     ggcttgcctc tttttaaaag ttcccgaaat ggactctggc caataatggg acattttcgc       660
     aatgtaaaag acagcgaagt gtttcttatt ggaacatttt taggaaaaga aaagcccgca       720
     aatccaaacg ttttcttaac tgattttgtt cacgagttac agcgcataga agtagatggc       780
     gttcaagtag gcatgaccaa tcttaaagta aaatgtcatg catttatatg cgatgctcct       840
     gctaaatctt ttatttgcgg cttaaagggg cacacatcct ttcatggctg catgaaatgt       900
     actcaagtgg gaacacgctt aggtacacat cacacagcgt tttctaccat gcgtgccgaa       960
     aaaatttatg attgcgacta tacgtctaga aaataccttg agcatcatca taactatttt      1020
     cttgaaaacg aaatgattct tgaaaagcta ggaattggca tgattacaca atttcctctt      1080
     gatccaatgc atttgataga tttgggcatc acaaaaaaaa ttatcaaaat gatttacaca      1140
     aacagttcaa caaactttaa attttcaaca tcgcaaaagg aggaacttaa tagacgcagc      1200
     ctgtccctag cttctttcat tccatcagaa tttcaaagaa aacctcgaag ctttgatgag      1260
     gtcaatatgt ggaaatccac agagtttaga ctttttatat tatattcgga tattgttctt      1320
     cttaaagatt taattccgga agattattat tataatatac ttttactaca ctcaggatac      1380
     aggctattac tttctaaaac tgactacact caaaatatca atgtagccga acaaattttt      1440
     gaatattttg ttagtacgtt tgctactatt tttggtcatc aaaatgtttc ttttaatgtt      1500
     cataatttgc ttcatatgtg tgaatgtgta aaagaaatag gtcatattca agattttaca      1560
     gcatacaagt ttgaaaactt tttgcagcac ttaaagaaat ctataaaaag cccttcgaaa      1620
     attttggagc agatacaaaa tatctatagc aattaacgat cgaaaactgt cgaaaataaa      1680
     actggcttta ttaaaaataa aaaaggagac attgttaagt ttgttaacga aaactatatt      1740
     ctaacgacaa ttcctccaaa caattactgt tgcataagtc caagttatcc agcaaaagta      1800
     attagatttg taaaaaatga ggaacatgaa aaatttgttc aatgtcaaag gtttgcagat      1860
     cctcagccgt tctacactac tcctattaat tctcaaatta ttggaatagt taaaactagt      1920
     cagtctgtac tggaagaaga actggtacac attagtcaag ttagttataa aaatatttgc      1980
     tttccgtgta aagaattttt agttttctta ccaattttac attgcaaata attatagaca      2040
     cattacatta aatatattta ataatcctta ttttttgaag agatgaatca caagactttt      2100
     caaccaaatt cttctgaatt taataatgaa aaccggcttt caaaaattga atgcgaattg      2160
     gcaaaaaaat cagatggata tcctagcaat tttaacgaaa ttaactaaag aggacatgcc      2220
     cccggatgat gatgttttcc ctattacttc aataagctgt ttggaaaaag tagaactcct      2280
     aataaaaggg aacgaaacaa aatacgtgag ttcaattata aaatgaaaaa aattttcgta      2340
     tcgtattcca gacctatttt aaatttaaat ttaataatgt tctatatatg tttaaaatag      2400
     gttaaaattt tgaaaagaat tttaaaagaa gatttggtga ggaactttga ctgcgttatt      2460
     ggaaaggaga ttatgataaa ctttaattat gacgggttgc aggataaaaa accgttcaaa      2520
     aaatatgaag ccttaaacca agctttatat ggtatgtata cttatatatc tttacgaatt      2580
     tagataatac aaatattata atattaacag attctattaa gacggaagga tctaaccagc      2640
     gaaattatgt atccactatt cgccaagcct tcaaaacgca taaagggcgc ttggctaaac      2700
     aaaaatttga ttgtaaaatt aaaaatagtg ttaatctgga aaataaagag aataatactt      2760
     tttaagtgat ttcaataaaa ataatattaa ccggacttga taaatttaat agatttaatg      2820
     taaataaaaa tgtaaatacc gcaactatac aaattgttaa ataaatataa ataaaaacca      2880
     tttcgtgtat gcagtatatt atatggtgca cttcttactg gaatattttt tgtcaacagc      2940
     ataacaaaag aacatacttt tccttgaatc gtatattaat ttgtaattaa actacattac      3000
     aagtcagtat accagtatat tggatcgaaa acaaagtaca ttacaaactc tagagccgta      3060
     tattaatttg taattaaact acattacaag tcagtatacc agtatattgg atcgtaaaca      3120
     aagtacatta caaactctag agccgtatat taatttgtaa ttaaactaca ttacaagtca      3180
     ctataccagt atattggatt gtaaacaaag tacattacaa ctcagcatac gtttttcaaa      3240
     ttgtatgttg aattttctct agtccgtcta cattttgcat tacaatttcg gaaaagtata      3300
     ttgaattcgt aatggagacc cgaaggtgat tcggccctag catacttttc ccattactag      3360
     taatgcaaat attctcccga ccacattaca aggcggccat gcctatggca aagtaatcca      3420
     tgttgtaatc cattgtttct ctattacgag aggagaagta atgcattcgt aatccatttt      3480
     gtaatggcaa ttttcgccgc tggg                                             3504
//
ID   EnSpm-N10_BTa repbase;    DNA;    INV; 443 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-443
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 937-937 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~81% identical to the consensus. TSDs are uncertain. Termini show
CC   similarity to those of EnSpm-N7_BTa.
XX
SQ   Sequence 443 BP; 122 A; 92 C; 90 G; 139 T; 0 other;
     cacagttaaa aatttccgtg tttatgggtt actttgagtt acttttttcg gtcagatcaa        60
     ccaaaaggac ttggttgatc gaccaaattt ttggttaaat cgaccgaaac cgtaggttac       120
     tctgagacat ctggggatga agaaagtgtc ctgctgaact aatgtactct tgtttctctc       180
     gatgtcactc agaggttgcg acttgcgagt ggctagcgca ttggactatc accaatgcga       240
     tccaggttcg atcctggcgg ctcgcgcctg atttttaacg aggttgcaaa ttttcaaccc       300
     aaagatttgg tcaatgtaac ccaagatttg gtcaatgtaa cccaaagaaa aactaaccaa       360
     aaaatattaa ccgcacgttt aggttacttt gtgttctact tcccatatta acacaaaatg       420
     tcggttactt tttcttacct gtg                                               443
//
ID   EnSpm-N10_DTa repbase;    DNA;    INV; 1503 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1503
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4669-4669 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1503 BP; 479 A; 178 C; 213 G; 633 T; 0 other;
     cactcaaaaa attttttttc ctaaatttta gaaaatcgcc ataaaatgaa attttttctt        60
     aattttagaa aattttctga attttagaaa ttgttttctt gaatctagga aaaaagacca       120
     taaaaacaga attttatgaa aaacctttct aaaatttaga aaaatgattt tttttcttaa       180
     atcaatggtg ttttttccta gtttgctctc caaaagtttt cttaaattaa tggcgatttc       240
     gccattaaat taagaaaaaa tgtacttcag cccttcctat aatctagaaa gtcgccataa       300
     aaaatacggt aaatttttct aaattttaag aatttttctg aattaaaaaa aaatgttttc       360
     ttgaaaacaa aaaagtagaa ttagaaaatc accatagatt taagaaaaac tttttgtatt       420
     tcttttatgc ttctcactct ttcttcgaaa cgaaaaagaa gaagacaagg ggttagtccg       480
     cggcgcgttg cgacgacagt ttttggcgta tgtatgtata tgtttatgtg tgtttgtgcg       540
     tatgatcgag aattttcttg tgcgtagctg taacttttat tgcgttgttg ttttggaaat       600
     gcagtctctc gcgagagagt tgcttgcgtt gcgctgcatt ttgaaccctt gtgctcagtt       660
     ttggatgagc attcaaagta ataagtttgt gttgagccca tttaagaaag ttaaagtgcg       720
     atccctctaa gaggcaatta ataggtaagc aatttaaata aatttaaata taaatttggt       780
     aagtgtgtga aaatttatgg taagcaaagg gcatactatt gcaggccgca aataccatcc       840
     ttctctaata ttaattttta ttttcgattg caggaataat ttcaatttca ggtattgttg       900
     ataatttggc agtaagtaag taaattttaa taataggtaa tatattaaat acctacttaa       960
     tattaatatt aataattttt atcttttttg ttttcttttc ttttttcttt tttgtttagg      1020
     aaatatttat aatgtaattt ttatcttttt ttgttttctt ttctcttttt tctttaggaa      1080
     atatttatta tcttattttt atcttttttg ttttgttttc cttttttgtt taggaaatat      1140
     taataatttt cttttcatcc tttttatttt cttttctctt tcttgtttag gaaataaaat      1200
     agtaaaataa atatgtatac attttattaa aataaataaa attttctgaa aataaaaaaa      1260
     gtcctttctt attttaagaa aaaaaattct attttcaaga aaagtacttt ctggatttaa      1320
     ggaaattttt cgcaatttta tggcaatttt tcttgatttt agaaaagtat ttctgctttt      1380
     cagaaatttt tttctaaatt ttagaaaatt cctttctaaa aaatacggta aatcgccatc      1440
     gactgaaatt catggcgaat ttcttgattt aatggcgatt tcgggctgtt ttttttttga      1500
     gtg                                                                    1503
//
ID   EnSpm-N11_DTa repbase;    DNA;    INV; 1285 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1285
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4670-4670 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1285 BP; 434 A; 226 C; 235 G; 390 T; 0 other;
     cactcataga aatttttacc ctaaatcgcc ctaaaaaact gacttttcgc ccgtggattt        60
     agaaaatcgc ccataaatcg tatccgctgg cgattcgccc gtgtatttag aaaaattttc       120
     taaaaaatcc ctatggaaat ttggtttaat ttagggtgat ttttcttgta ttgagaaata       180
     ttttcctatt tttagggtga tttgccctaa gtttaaggcg tatttttcta aaagtaaggg       240
     cgaactttct gtttttaaag gcaaatgccc taaaaaatta tgcaaattaa aaaaaatcgt       300
     gtttgagcat gcttaactga atttgggaag catgaatttt agtcgtgtat attctgggaa       360
     ctgggactgc tttaattaaa caacaccggc ggaggagacc gttgcatatt attgtattgg       420
     tgtgtagctt atatgggagc tgcgttagga ggggggcccg atctatacaa cacagccgtt       480
     agaactgaaa aatcatgttt gtaaacgaat tagggaaata aatatgagga gaaaaaacaa       540
     cttacttttt ttggtcattg cgagaatcga acccacgacc tctcggttta gagtctaacg       600
     tcctaccgct gcaccacaga cccatcgcgc aagacaacga acaaactctg cagacatctt       660
     attttcctga ggtctacgtt ataatttgac taaaggcaac taaaccgaat atttttttcc       720
     tgacgactgt gacaattagt cccgttttct tgccagcaaa cacaaagtat gcttttaact       780
     cagaactccc atacgttttt aaggtttaaa gactacttta atttaaaatt cggacgaaaa       840
     aatgtcctta gtattataac gtttacaaaa aaaaaaaaaa acataaaaat caagttgaat       900
     cacacagggt tcgaacccac aaccccacga ccttagtcct catatagcaa agttgaaagc       960
     gcaagtgatt agaccgctgg gctaccgaat ttcacacttt tggagtgatt tttaaggcga      1020
     atcgcccttg tatttagaca aattttagaa aaaaaattag ggcaattcgc cgttggattt      1080
     agaaaaggtc aaaacgaagc aaatcgaaaa aaatcgccct aaatattaga aaaatagaaa      1140
     aattaaccct aaaaatattt ttttatggtc acctgccttg aatttatggc aaatttgtcg      1200
     tgaaaataga aaatttttct cagttcaagg gcgaaaattt ttttagggcg attttctaaa      1260
     atgtagaaaa ttatttttat gagtg                                            1285
//
ID   EnSpm-N12_DTa repbase;    DNA;    INV; 1374 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1374
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4671-4671 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1374 BP; 493 A; 222 C; 187 G; 472 T; 0 other;
     cactcaaaat aaatttaacc ctaaatttta gaaaatcgcc attaaaattt cttttttcta        60
     aatacaagaa agttatttct aaatctaagg aaatttttct taagtcaaga aagttttcct       120
     taaatccagg aagtttttct taaatgtaga aaatggttac catgaactaa aatcacccta       180
     aaatctagaa aaaatgccct taaaattaga aattattttc tgaaaaatag aaaggcaaac       240
     gaaaataata aaatatattg gcaacacctt ttctaaaaat gagtgcccta accctaaaat       300
     taagctaacc ctaaataata gaaacatttc ctaaaaagta gaaagttttt ctaaaaaata       360
     gaaatagttg ttttcacatg ctctggcaca ccaaaatgtt caatgccaga acttgtcagc       420
     tgccggccag ctgtactcgt ggcgcagacc gttaaagcac ttggttagca atcgaatcga       480
     cgcgggttcg agtcccagag caaaattttt taactttttt ttttaatgtt attttatttt       540
     ttttaattta ttttatttta tttttattta tttttttact tttttttatt ccttttttta       600
     ttgatggcaa gcagtaaact aaaaataatt aggtttatat tcagttattt actatatact       660
     acacataata taaattgcgt tagcataaat atatacatat gtatatacgt atgtaaataa       720
     gtaaaacgcg aatggtcaaa attatgcaat tagtattcaa atgtgttgtc cgcttcaccc       780
     tttacataca ttgctcggtt tgccacagca agtttaagtg ctacaatggc ccagtatgta       840
     ggccattcgc tcctcgcgcg ggagacccgg gttcgattct cacgacggac aagtaaaaaa       900
     ttgtaagttt ttttcatgaa cataaaatat taactaatca taatttctac attcccaatc       960
     ttccgcagtc ccgtagtcca catttacaac cacatttggc tttggttaga taagaaatcc      1020
     aagcgcaaat acataataat aaatacataa cctttaacat tcacaatata caagacacac      1080
     aacgcctgca tatgtatata gggaggagta cataatataa acgtatatac aaaaaaaaat      1140
     catgattgaa catgtttttt tgttttgttt ttaatttcta ttttttagga aaatttccta      1200
     ctttttagaa atttttgccc ttaaatttag taaaattacc ctaaaattta gaaatatgac      1260
     gtcaaaaaaa atcaaaaata tagaaaaatt tgaccctaaa atttagggcg agcttgtctt      1320
     gaagacaaaa gtagggcgat ttccttgact ttagggttaa ttttattttg agtg            1374
//
ID   EnSpm-N13_DTa repbase;    DNA;    INV; 1209 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1209
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4672-4672 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 1209 BP; 383 A; 196 C; 218 G; 412 T; 0 other;
     cacaggccaa cagtgttttt ggtgcagccc tatgggcatt aaattgtgtt aatatagacg        60
     gatataagca tatctgcata cttagttttc gagtttaacg ggtggtattt gtgcaatcgc       120
     ggtttgaaaa aagtagcaac attttatatt ttcatttaag atatcttcga gggtctgtgc       180
     tcagttgtaa taaaacctat gccaaaaaat tgcttagatg cccttctaca taattgcatt       240
     taaggttcca tcattatttg agttaataaa agcctatgag ccattgaagt aatttgttca       300
     cctctattta caaccaactt gatgcggtga acaggcttaa aaaaatacaa ggaaaaatat       360
     gtgccctaaa atattttaca tgcatctaga ggcgtctttt cccgaatttt tgagataaat       420
     cccactattg tacttcgaaa aatggaattt atagaatttt ttccgtaaga atgggaaaag       480
     taacaagtat tttagagtca ctcttacgta acgagtttgt cgtgatttta cacagtaggc       540
     tttttaaaga taacagtggc gtcgccttaa aattgtggtg gggatttttt ttaaggcata       600
     ttaacccctt aaaaatataa tttgtctatg ttcggcgcct actgctaacc aaattgaaag       660
     gcacattttt acgaatgtgt cagatattta tgtaaaatgg gatttaaaaa tagttgttac       720
     tttttaagtt cttacggaaa aaattctata aattccatcc ttcgacgtac aatggtctta       780
     tttgtcttaa aaattcggtg aaagacgcct ctagatgcct gtaaaatatt ttagggcata       840
     tatttttcct tgtatttttt taagcgtgtt caccgcatca agttggttgg gaatagaggt       900
     gaacaaatta cttcaatggc tcataggctg tgattgactc aaattatgat ggaaccttaa       960
     gtgcaataat gtagaagggc atctaagcaa ttttttggca taggtattat tacaactgag      1020
     cacagaccct cgaagatatc ttaaatcaaa aaattaaatg ttgctatttt tttcaaaccg      1080
     cgattgccca aataccaccc gttaaacgcg aaaactaagt atgcagatat gcttatatac      1140
     gtctatatta acatgtttta atgccaatag gcctgcacct tttaataaag tccattttgt      1200
     tgacctgtg                                                              1209
//
ID   EnSpm-N14_DTa repbase;    DNA;    INV; 1672 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1672
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4673-4673 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1672 BP; 531 A; 334 C; 341 G; 466 T; 0 other;
     ccctgcaagc aaacgggcga tatttctatc gcctatcgtc cagaagtcac ttcttagtaa        60
     cttctggaag atagaaacac gacagaacac attttacaaa aacaaaatat acatctatcg       120
     cgaagaagtc acttcttggt cacttctgga cgattaaaat acgatagaac acattttaca       180
     aaaacaaaaa gggtcacgat cgtggagaag taacttctaa gacacttcta ggcgatagaa       240
     agacgataga acacatttta caaaaacaaa aagggttcaa atcgcgagga agtaacttct       300
     gaggcacttc tgggcgatag aatggcgata aaacacattt gactacctaa aaagggttca       360
     aatcgcgaag aagtaacttc tgaggcactt ctggacgata gaatggcgat agatcacatt       420
     tgactaccta aaaaggcttg cgatcgcgaa gaagtaactt ctgagacact tttgggcgat       480
     gaaaaggcga tagaacacat tttacaaaaa caaaaccaat gggaaaaaaa catcttccaa       540
     ttcacttctg gaagttaaat tgaagataga aaggaatttg gttttatttt tttgaagtct       600
     ttggggtaca gtccgctctt ggctctctct ttatacctga aaactaccct tttttctctt       660
     tgacctacgc actttgtatt ttgaattcga gcgtcagttc gtttcgagat ttctttgtga       720
     tcagtgcgat ttattctaaa tttctgtgtt tgtgatgaaa tgcggagtga acccgttatt       780
     ttttaaatat tacataccgg tggaatataa ataaaataca atatttattt acatcaaaaa       840
     ttaaagtgat tggagaaatc gagatttaag cgtgtacaag gctgtcctgc gaaagcaaaa       900
     ggaattactt ggcgtgaaac tctgggcaaa ccgaaaactt aactatactc cacttattta       960
     attataaaag gtaaatacct cctccgattt ttatatggca caatattaat tatttttttg      1020
     ttgttttaag cattttcata gacggaacac ggaactggaa ttaaataaaa taatacaaca      1080
     ccatttccta caagcttatg gaccgtgctt acatgccgca atgcttttgt aactatatat      1140
     ttcaataaat gtgttgaaag aataaacatg aagaatgagc acaaaaaaca tattttccaa      1200
     ttgggaaagg gtcttctagg tatcgtctac aagtgtcttc tgagtaactt ccagaagtga      1260
     cttcggcgac acttctacaa gtgacttgca cgatatcgca ttcggatcgc cgaagtcacc      1320
     cccgtcggga agaactgttc cactacggcg gcacttctag aagtgtcgcc taagtcactt      1380
     ctggaagtga cttccgcgat atcgcattcg gatcgccgaa gtcacccccg tcgggaagaa      1440
     atgttccact acggcggcac ttctagaagc gtcgccgaag tcacttctgg aagtgacttc      1500
     cgcgacactt ctaggagtca ctcagaagtg acttcgggaa gtgtcgccgt agtggaacag      1560
     ttcttcccga cgggggtgac ttcggcgatc cgaatgcgat atcgcggacg atcgttttca      1620
     tcttctagac gtcactaaat agtgacttcc gcgatagaaa atgcttgcag gg              1672
//
ID   EnSpm-N15_DTa repbase;    DNA;    INV; 1553 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1553
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4674-4674 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1553 BP; 535 A; 243 C; 300 G; 474 T; 1 other;
     cccttcagtt ctggagtggt gacacatgac aaattcatta ggccaaacga acggccgctg        60
     ccgacgtcag cagagaagtc ggcgcagcgt agaagactgc ggacgaaatc tatcgtgcaa       120
     gaaagggaag ccgatattca tatattgctc tctctttttc tgtcttataa tctgcctgca       180
     ctcggcggta gcagagacaa atttcggccg gtccgtcatt ctcttttgcg cttaaccgtt       240
     atgttcagct agcgaccaaa atttggctgg aataattttc gtgacgcagc gacatgtgta       300
     tgcccttaca ttttgtgagc attattatat ttcaaaataa acaaattaat ttcctgttat       360
     aaatttaaat tgtttattca taaaatttga atttacttaa acaatacatt tacctaattc       420
     aattttttat ttaacttgat tttataagtt cattttttag tttagttaaa aaaaatggtc       480
     cattaatatt tatttaaata ttataacact aacagtttta agaaattgcg tttttactaa       540
     acaaatacaa attatttagt cggatatata ccgctttaga aagggtgtag gagcattggc       600
     acgcgccaac agcgaagatg aaacaaaaga aatcgggtaa aggggtaaga agaagacttg       660
     gtgcatcgca ttattttcaa ggttttctga gagaaggagt gttttgcgcg gttaataaaa       720
     tattttgtga caagtgatat atacataaat taaagtcagg taagtgctac cttaaatgta       780
     agatattgtg atagacttaa ctttaacttg caccaatttt gaaagtgatt tgtgttttgc       840
     aaaaaaaaac ctagaaagtt ctgtgtgcat tagccgaaag tggcaagctg aaatgctttg       900
     taacaattag aaacaaaaca aaaataaata tatatatatg tatatttaca gatccagaaa       960
     gtgaccaaaa taataattta tcgaaatgcc tgaagctgat tatttcagat agtctggtta      1020
     tcgactacaa tctggacgga agcagcggca aaaaatcttt aaaagcacgc aaagggctat      1080
     atgcggtgct taatggtcag taagcaatta tttgaatatt aaatacaaat ggtaatactt      1140
     gttttttaaa ttttttcagg agcgttgacc caccaatccg aagacccgat aagaaatgta      1200
     aatgaataca atgaaataaa taaaattaaa taaatgaata gaaaatacaa taatttgtat      1260
     tttttttttk taataaaatt gctgatgaca ttttggaaaa agtcactcgt gaaatcatgc      1320
     gtgacatgtc acagggtggt gacgtctcat atgaccaatt cgtataaggc actggtgata      1380
     tcacgagtga cttcgaaaaa atgtcattga agctatcact atggtacggg gtaggaactc      1440
     tcgaacaaaa gtctctatgg aaaatcacga gtgcgtcacg agtgccaaat gacctgtcac      1500
     gagtgattca cccggtgatt cacgagtgaa aactgatttc tggaactgaa ggg             1553
//
ID   EnSpm-N16_DTa repbase;    DNA;    INV; 1076 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1076
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4675-4675 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1076 BP; 361 A; 152 C; 145 G; 418 T; 0 other;
     cactggtaaa aaaaaaatgg taaatgtcac tattttacca ttgtttcaat tatttttccc        60
     agcgaaatag atcctaacat gaaaatagta aaatcgtata tggcgcatag ttaataatgt       120
     tttaaatatt tttatagtaa attcaaagat ttttgtattt gatttgacta ttttttttat       180
     ccagaatctt gtaataataa tttacaaatt tgtttttttt ttcgagtgag cgcctaaagt       240
     atttacttta attttgaaat gcagttattt attgtcatta caatcaaaaa tattactgtg       300
     aacttaaaag agcattctgc ctcgatagga aataatatgg gcatggctca ggggtcaagg       360
     gctaggttct gatactattt tgtgctcggg ggtaccaggt tcaagtcccg ctgacaccac       420
     aacttatttt tttttttttt tgtgattagt aattcttaca acttttttaa tacaatattg       480
     ttcttataaa tgttaaggaa atgttaaata cgcttcttaa aaacttttta cttactctgc       540
     ctcagacggt ttcgaaccgg ggtcctctcg cgtcagaggt agatgcctta cccattgatc       600
     catcgcacca tgttacgcgc gagtggataa gttcaactta aatgtaaagt taacacgatc       660
     cataacacat ataacttttt aaaactaaaa atgctacttt tcactcatac attttatgga       720
     aatttaattt aatattattt gaatcttgac tttcaaaata attgtgtcaa ataaactttt       780
     tattcaaaat aaattgcgaa agtatttaat cggatcagaa aaaacattga ttatactatg       840
     tatataactt actatttaca atactaaaaa ctactattgc gactttggtt ttcaacatca       900
     gtaatatcat ttcaaatata attcccttcg attttattat ttttatattt gaatgaaggt       960
     ttaaatatgc tttttattaa aatcaatgat ttatttattt gatttaacta tgaaaagtag      1020
     taaatgaaat caactaaaaa aatatttgat tttactatgc gtttttttta ccagtg          1076
//
ID   EnSpm-N17_DTa repbase;    DNA;    INV; 1561 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1561
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4676-4676 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1561 BP; 517 A; 265 C; 292 G; 486 T; 1 other;
     cccttcagtt ctggcgtccc atgtcgggga caattcctta ggccaaacgc tcggccgctg        60
     tcgacgtcag cagagcagtc ggcgcagcgt gtacctgaaa gaaagagagg ctgatattta       120
     tatattgcgc tctctttcct tgtcttataa tttgcctgca ctcgacgcta gcagtgacaa       180
     atttcggccg gtccgtcatt ctctttttcg ccttacagtt atgttcagtt agcaaccaaa       240
     atttggccgg taaaatttgt gtgacgcagc gaaatgtgta tgccatttca tttttcaatt       300
     ggtccataat attttttaaa taataaaata ttaaaagttg tatctccaca aaaattattt       360
     gtgcttttac tcaatagaaa gggtatacat agaagcattg gcacgcggca aaagcgatga       420
     tgaatcaaaa gaaaacggga aagcaaaatc atgactggct gtattttttg actgtcaatc       480
     gaagagaaca acgtgcttaa atttgtgcgt agacaatttg taattggcga tttaaaaaat       540
     tgtacaagtg tttaccaatt gtattaaaag ttaggtaagt ggcattttaa ttcatttaca       600
     tatatgcagt tgatattaat taaaataacc ggtaggttta tgtccggttt gctattgttt       660
     ctgggtagaa aaattcttgc aatatgtaca ttagggtgga cttaaaaaaa aaaaactatt       720
     ttttttttac tttttctttc ttttatggat taaggataca aaaaagtcat atatgaaggg       780
     gtgagagcat ggctttagaa atttcataca aaataagtcc accctaatgt acatacatac       840
     acacatttcc cgtggccagc gctaaaaatg cttaggatct cgctgcggtc tctacttgat       900
     ttaaaaaggt aaatataaaa atatacaagt aaaacatatt tttaaaacat atgtctgtct       960
     ttaatttttt caggatcctt cgtcaaatat tcacgcggac aaattcatga ggacggcaat      1020
     cttacataaa aatcaaaaac aaaaaaaaac aaggggtatt atttataatt aattgtacga      1080
     aaatgtaagt aaaacaattg aacacaaaat acaatttata aaatgaaaga gccaataaaa      1140
     attacaaata aatttgtatg tttcttattt tatataatgc aaggaaagaa tttttttgta      1200
     catgaaattg ctgatgacat ttttaaaaag tcatccatga aatcacctat gacacaaggt      1260
     gacacgatga tggattttcc taagtgacaa cccattggac aaattctgaa tgtccctcgt      1320
     gaaatcmtaa gggacatgtc accggttggt gacatctcaa acgacaattt cgtataaggc      1380
     ccttggtaaa tccccgggga cttcgaaaaa atttcatttg aattgtactg aaggaaaaag      1440
     cggaactccc atacaatttt ctctatgtgg cgtcctcggt tcgtcctcga gtacagacga      1500
     cctgtcctcg ggttttcctt tggtgattac tgagggaaaa gtgacatctg gtactgaagg      1560
     g                                                                      1561
//
ID   EnSpm-N18_DTa repbase;    DNA;    INV; 1069 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N18_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1069
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4677-4677 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1069 BP; 334 A; 159 C; 186 G; 390 T; 0 other;
     cacccaaaaa aaaatccgaa agtttacagt taatacgcgt tgtattaaaa gtatactaca        60
     gctagtatca aactgtcagt attaatttaa aactaaataa tgtaaggagc agactcaata       120
     gtgttaagtt aagactaaat agtgttaagt ttatgtcctg agtttaattt ctataccgaa       180
     gttttcggtt ttcgttcctg gtgtgaagcc aggatgctct ggtttggaac ctggacattt       240
     cgaacagaaa aagtgttacc gctttttaat gctattcgga cgcgttagta ttttaagggt       300
     tttacattag tgtattttgt aaacgacgct gcggtctgtt taaggtttgt ttgtgaaaat       360
     tacttgtgaa aattttaata tttgcttatt ttgggcttat ttgaaatgta agtacattta       420
     aattgtgtct tagtgcataa ctaatgagta aattcttttc tttttactga caccaccttg       480
     aattgcgctc cagatgccgg gaaactaagg atcttgcaat tggcttgcat tttttctgac       540
     cgcggccagc gcaatgttaa cttcaatatc agcgtcctcg accaagcttc ggtattcatc       600
     tggacggcgt tcactctgga gatgatcagc gacataagcg gtaaaacggc atttgcccaa       660
     atatgcatac atacgtacat attttgtaca tgtattgtat ttatgtttat ttgttaaatt       720
     aaaaattacc ttcagtaatt tataaaaatg taaaaaatat ttttaataat atatgaaaag       780
     tacaaaacaa cattttttga attttgtctc tttaatacgg ggggtataat atttatactg       840
     gcattatact aaatagtata caaaataaac tagcagcctg aatttcagta cactgagtga       900
     gtataaactg tatactcgtt agtttaaact tgacaacttc gaaagtttca tttttatact       960
     ttcgaagtcc attagtttaa tactcagagt atcgagaaat ttttgacact caatagttta      1020
     cttttaatgt agaaatagtt tactttctat gatcattttt ttttgggtg                  1069
//
ID   EnSpm-N19_DTa repbase;    DNA;    INV; 1498 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N19_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1498
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4678-4678 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1498 BP; 520 A; 223 C; 195 G; 560 T; 0 other;
     cactcagaaa aaaaaccaag cacattgtgc ttgtttcaag cccaaatggt cttgaaaggg        60
     cgacaggtac gaaatgggct tgttttttca tttcaagaac gttttattct taaaccgaca       120
     ttcttaattt gagaacattt tcgggcgtaa ttaagtatga aatgttcttg aacccagaat       180
     taattatact taaattaagt ataaattcta ctcaaataat gtaaaaaata aaaaaacaat       240
     tttaaaaatt taatgaaaat tgctttagag tgaagggtta atattattat ttgtacaaat       300
     ttaatccgac ttacttgtaa atgaggtata agctatgctc aaatgaagta tgaaatattc       360
     ttaaactaat agtataaatc attgtgttgt tttattagtt aacaatactt attttgtata       420
     atcttaaact taattactca taaatgtata aagatttgta gataaaaatg tgttttatac       480
     ttacgaaaca tttttcttaa aatcacatac ctctcccagg attcgatccc gcaacctcac       540
     gcaccacagt cggacgttct aacagctcgg ccacgctcgc tcttacgcgg cgatgaccaa       600
     aaaacctaca taagtacttt tacttgcata cttaatttaa gtacaacgtg tacttgtttt       660
     gagaatttaa ttcttagttt taaataatat aaaacaaaaa cacctcttaa caagttaaaa       720
     atggagtgac acaaaatccg taatttgcta ttttctcccc gatttaaaca taaaatcggc       780
     ttgttttgag aatttatttc ttagctatga atttaaatgt ttttcaaatc gaatcgtatt       840
     ttggcatata tgatgcacgt ttttcacagt atttaataac aattattaat ttcaaaattt       900
     tctccgattt aacaaaattt gcttgttttg aggatctaac tcttaatttt taataatatt       960
     gaactacttg tgttttataa acatatgtac ctacattata cagtttttgt gaactaatct      1020
     tttttagtct agcgccaatt ctattttact ttaatcaata ttggaactcg ttaactaaat      1080
     taattagtac attttaacat tggcttaagc acaaattgta cttgtcaaaa tgcttattat      1140
     tttttaattt taatactact gatgagaata attcattctt atttacagaa tactaaaacc      1200
     taattttctg aaattaagta cttttagtaa tcacattaag aatgtttgtg cttaccatga      1260
     aaaattattt ttttagaata aattatactt gggtttagga taaatcgttc ttgtttagtc      1320
     ctgtttattg aattatgttc tggaatcaag aacatttgcg gataatttgg gttttaagaa      1380
     tgatttattc ttaattcaag aacgcccaac attctcattc ttaaaacaag cccaaaaaat      1440
     actatccgaa atcaagtata aatcgcgctc aaatttagga tgcgtttttt tctgagtg        1498
//
ID   EnSpm-N1_AAe repbase;    DNA;    INV; 1396 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous EnSpm DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm; EnSpm-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1396
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1284-1284 (2011).
XX
DR   [2] (Consensus)
XX
CC   2-bp TSDs. Both termini are 66-69% identical to those of
CC   EnSpm-1_AA.
XX
SQ   Sequence 1396 BP; 424 A; 242 C; 249 G; 480 T; 1 other;
     cccgcataat catgaaccat actagtaccg tttcccgttt tgtccataac aatttgctac        60
     aatatgtgaa caatttcgta cagtatcaaa aataacaata aatctaccct accgcaaacg       120
     ttgtttacag tttgatagat ggtaactgag aaaataacaa tatgaggaat aggcggttaa       180
     gttatgtaac catttgaaac cgacgatttt cgcgaacaaa atttttcgtt tacagtttac       240
     caaacgttag atatattatc cattttttgt acaaatcact gttatgcaaa cagtttgaaa       300
     actgtataac tataaaattg gaataaaaaa aatactgtat gtgtaatgat tgattcacgg       360
     ttttgtatgg tactttaacc gcttactgta ctgttctttc actgtcatac aatataataa       420
     gtaataggtt catgtaggtt atttttgttt aattgtttat tattgaaaaa tatttggttt       480
     tctaaaactc actttatcta ccctgaagtg ccatgcgatg gtttatagaa aatatcaaaa       540
     tacagttcca acaccagtcc tataatttct cccaactcct ccgccatcca tgtgtcttag       600
     atccggaaaa ggcatttttc tttcatcagc ttgatgaaaa gtgaatctac tccgtagatc       660
     gtagaacttc cattgccttc gatcaccata gaaatgttgt cataccggca ccgacagtag       720
     ttcgtggttc catgagggtt tttgtgctgc catgccacct ggaatgacga tgagtatcag       780
     aacttcagac gggatttacg gcatatgtgg ctattcgata gagttgcggg tttaaactta       840
     cctggcgcac ggaattccat gcgttttcga cgctgccgga ttgtttgatt tcacggagtt       900
     tcaggtgttt cagaaaatca gcggttacta aataaaaaat aaactttggc tgttgtggaa       960
     atatgacaca acgatgaaaa tgatcaacga tgcactaaat atgttcagta cgaatcgctc      1020
     acaaatatca acatgtttga ctgtttgcca aattgtgaaa caaaagtaac atattgtttt      1080
     aattttcgtg tgtgcgtgtg ttgccatgtt tcttgcgatt atttgaaaat ataatttgag      1140
     aaaaggtgat caaattgttg cacaatttct ctcaagtttc tgtcttcgtc tcgttcttcg      1200
     tatggtttta caatttcttg acacttttac atattgtaac cgttcgctaa gaactctgca      1260
     aagtgttctt aatgatttta agctttttga ttgatattgt tcgacaaaat agcaactatt      1320
     tgggataaat taaccktttc tgttaaaaga agcatactgt ttggaagcta aggataattg      1380
     ttattttcta tgcggg                                                      1396
//
ID   EnSpm-N1_AG repbase;    DNA;    INV; 1172 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   23-SEP-2015 (Rel. 20.09, Last updated, Version 2)
XX
DE   MARINERN5_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; mariner/Tc1 superfamily;
KW   MARINERN5_AG; EnSpm-N1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1172
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN5_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 22-22 (2003).
XX
RN   [2]
RP   1-1172
RA   Bao W.;
RT   "Reclassified as renamed as EnSpm-N1_AG.";
RL   Direct Submission to Repbase Update (23-SEP-2015).
XX
DR   [2] (Consensus)
XX
CC   There are ~100 copies of MARINERN5_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   MARINERN5_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 26-bp terminal inverted repeats.
XX
SQ   Sequence 1172 BP; 342 A; 253 C; 274 G; 303 T; 0 other;
     cccagatagc aaagccgaag gcctttgtat gggagccatc gcgctgatca aggctcactt        60
     tttcgcgcgc ataaagcaaa atgtgcgcga aggcgaaaaa aaacccgaaa gcgcttcgtg       120
     tggccctctc tcgtgtttct agttttattc tctctcgcat gtcatcactc tctcccagtt       180
     tttcggattg aaatgagaat tcactctctt gatttggttg cggcagtcta gctgcttcac       240
     actctttatt ctcttctttt tgcagttccc acaagaggat tcacacatgt gttctcacat       300
     acttacatac acacacacac ggtggttgga agcctggtgc ggctgtttcc aattctgtct       360
     tttcttcttc cctcttcaca ccgcgctgga gcccgtggtg gtgcgcgtgt tcagcctgct       420
     tggttcagga aagatgtcat cagatttggc gcgcctcaac cgcggtgttg tatgaaggct       480
     gttgatgaaa atacacaatt aatagacaca ctttgttaaa aagattacac ttcatttaaa       540
     gatgtgacaa acttaccttt gtgcttgagg atcaattgaa acttgaacgc ctgtgcacac       600
     agtgtcacac tttttaagta gtttgaggaa cagctagcgg tagcagcaca catctgaaac       660
     ttgtaatgtg caaaacattg catattagaa taatattaga attagaataa atgtcacata       720
     gcactagaca cttagaaaag gacacttacc caaacaatta gatgataaaa attcgtcctc       780
     cgatgaagca gaaagaacac cgcggatggc gcagtatgga aagtgtttca cgcaggaaaa       840
     atagttcacg cagcacacaa acacacactc tcacatccac ggttcagagc acactgaagt       900
     cgctctttgg cttggatgga aaagagcaaa caccctgatg agtgcgatgg aagaaaatga       960
     cgtgtgttca acagggatgg gtagaatcca acacacgaag tgtgcaggag aattctcttc      1020
     gtgtggcaag agagaattga ctaacaccct gatgagcgag aacgcaacaa acgttgtgga      1080
     atgtagaaac gggataggaa tagtaagcga aggcagtttg tggacatgag ggggttgaaa      1140
     ctgggagaaa aaagcttcgg ttgctacttg gg                                    1172
//
ID   EnSpm-N1_BTa repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-228
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 521-521 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 228 BP; 76 A; 39 C; 36 G; 77 T; 0 other;
     cactggaaaa aaaaacacat tggatctaga gtccagactc ttgaaaacat cgacaagaaa        60
     aaatactctt gattcaatca gatttaagct taaatcaaga accaagcctc ttaatttgag       120
     cggatttcct tttgatttaa gcttaaatct gattgaatca agagtatttt ttcttgtcaa       180
     tgttttcaag agtctggact ctagatccaa tgtgtttttt ttccagtg                    228
//
ID   EnSpm-N1_DEl repbase;    DNA;    INV; 2903 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 3)
XX
DE   Repeat from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   REP-1_DEl; EnSpm-N1_DEl.
XX
NM   REP-1_DEl; EnSpm-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2903
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 577-577 (2012).
XX
RN   [2]
RP   1-2903
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 14-bp TIRS. Mostly TA-TSDs, but NN
CC   TSDs were observed in its homologous TEs (EnSpm-N2_DSuz). Based
CC   on the terminal CACT, it is classified to EnSpm, and renamed from
CC   REP-1_DEL to EnSpm-N1_DEl
CC   [2]: sequence updated and reclassified and renamed.
XX
SQ   Sequence 2903 BP; 1120 A; 361 C; 359 G; 1063 T; 0 other;
     cactggtaaa aaaatggaat agtaaaaata aatatgcgca tattgaattg taaaatgcgt        60
     atttcatatt taaagtaaat ataaaaatat taaaattaaa tacaaaacgt attaaattcc       120
     ataatttaat ataaaaatat ttaaatcaat gcggtaaata ttgagtttaa attttgggca       180
     atttgtttta aattttatca tattaaaatt gaaaattttc agactagaaa aaaaacatag       240
     tcaaattaag aatgtgtcat atttaattat agtacgaaaa ctgaaaatta ttttgagttt       300
     ttaatgattt ttacaataaa caaaacatta ttacagttga tattgtcaat taaatttcaa       360
     tagctcaatc ttagcgaaat atatttaata aatatggtac ttaatatttt taaatttaaa       420
     tctaatatta tttgtattaa tatctatgtt taaagtatta tattgaaatt gctcaatatt       480
     taaatttaat attattcgtt atacataaca aattaaattt aaatattgtt tttgttactt       540
     taaatattat tcctatttaa tttaaagttg tagtcgaggc ccgcatttta tatttaaaaa       600
     taaatacaaa aattatattt taattttttg ttttgttcca ttaatttaga cgaaactctt       660
     aaatttatta cgttcgtaac taaattaaaa taatgttaaa taaatggaac aaaagtcata       720
     attatacata catacataca tatgtgtata acaaattcta aatgcgcatt tttagcggtc       780
     ttttttctcc gttattcgct gtttctttga aacggattca cacacacata tgtacatatg       840
     tgtgaccaga tcacttctct tcgtattcag cattgcacgg cgcgtgccat catttctaag       900
     tcgcagttgt tgtgtcgtgt agtgaaaatt aaagtttaat tgctgatgcc gcgatctcat       960
     cagaaacaca aatcaaagat agtgaagtgc taaaataatt aatctggatc gcgattctta      1020
     cacgttattg ggtgaataat tctgcaataa atttgtttta ggctttatac ccacgcttga      1080
     tatatatatg tatgtacatg tgttggtatg catgtacata tatatgtatg tgcagcgttc      1140
     gtttaccgct taattggcgt tagatttagt ttggaagcca ctagaaacgg ttaacggact      1200
     ctgcacatac atgcatatat ttgtatgtaa gtgtgtgaga atatttaaaa acaaatatct      1260
     tctagagtta ttcacataca tattaactgt gtattttacc gcgatctagt ttaacataat      1320
     taaccctcaa gataaagatc acgccaagat taattttaag cttcggaagc ataactattt      1380
     ggtaagtacc gatctaacaa taaaaatata aatgtggtaa tgttatgtac atacatacgc      1440
     acgctgtgta aacatgtttc tacatatgca tgtatgtatg tgcagcgttt tagttaccgc      1500
     ccaaaaaaat taacaaaaaa aaagcgaata cttgatttga ttttttaaaa tattacaaag      1560
     taatattaat attttaaaaa ataaaatcaa tcaaatggat aataataaca ataaattagc      1620
     ataaaacaat ccctggtgat accgtaatat atgacttgga aaaacccaag ttaagaaaaa      1680
     aaatctaatt tcagatacaa atcgatttta atttaatgtt ccctggaaag gaaaggcgca      1740
     ttagcttcaa aatgggaagc gtttaagaag gaaatacaac agtactatgc gtataatatc      1800
     cacaacgtga acagaaggaa gctgtttatg aattccaaga attcagagac tattggtaaa      1860
     ttacattatg aaatatattg ttttattttt taattaaaat tcttattttt gtctttcttt      1920
     tatttctttt tcatcagact ttattttgac tatcctgctc ccctcaattt taccgcccaa      1980
     tacatggtac tcttcaaaag catcaaaaac cagaactccc tggaaagtct agtccttcaa      2040
     gtgaactcca ttgccgacta tcgccaaagg attgcagaat ctgtcggtaa aaactattcg      2100
     aatttaaaaa cagttcaacc gtgtatgttt gtaaaaagcc acaaagcaaa tacgttcttt      2160
     gataaactat ataggccgta ctgtatataa attttgctta aataaaatga ttacaaaaaa      2220
     aaaatgtact gctcaatgtt tttcttatgt taataaacgg ttttgaataa tttaaatgaa      2280
     tataccctgc atttgattta aatataataa atatttatat ttaaaacgct aaataataca      2340
     tgttatataa ttcatattta aactaaatac tttaatattt aaattcagtg aaattgttat      2400
     taaaattaaa tatgaattgc actgtattta agtttggaat atttaattta tagatgtttt      2460
     atattaacat taaatacgat tataaatcaa attaaatatt ttaatattta aaacaaagat      2520
     gcaccgtatt taacttaaat ttatttcata ttaatttaaa tacggtttat acttaaatta      2580
     aatattttaa tatttaaaac aaacatgttt cattattact tcaaatacga tttctagtta      2640
     aattaaatgt tttaatattt aaaacaaata cgcatcgtgt ttaatttaac tatgaattat      2700
     gtttaactta aatatggacc aaatttaaat taaatattaa aaatattgaa aattactctg      2760
     taagtattta aattaaattc gaaaatcaaa ttaatatggt gcatatttaa agtaaatata      2820
     aacggatttg gatgaaaatc aaagcgaaaa atatttaaat tgaatacaaa atatttaaat      2880
     ttactacttt ttttttacca gtg                                              2903
//
ID   EnSpm-N1_DTa repbase;    DNA;    INV; 968 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.09, Created)
DT   19-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-968
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4702-4702 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 968 BP; 326 A; 157 C; 171 G; 314 T; 0 other;
     cactcagaaa aaaaatcgcc ctgaatttta gaaaatcgcc atacttttta agccaaaggc        60
     agctcgcctt gccttttaga aaaaatattt ctaaaaatta gaaaaaaaat ttcttaaatt       120
     tagggttagt ttttgcaaaa ttgaataaga agaagaaaaa aaaaatcggg gaatcgggag       180
     ttatgccgac tgggtggagt ctgtcggtgt ggggtgttgt tgttggggtt ctcgtttttc       240
     aacttatttt tctctcctct atttaaacac atggatgacg tcacgatgct tgtacacaaa       300
     cacactttta atctttaatt gtaactgaaa taataactga aattattata ttatttatta       360
     atgataaaca taaaaatcaa ataacttact atcttgagga aaacattttg gtcgctcgcg       420
     ggattcgaac cccttacctc acagtttgca gtcaaacact ctactagctg cgccagggaa       480
     gcatcacgag aggcgctgta caaagtacat tctcattctg ttctcttggg ttctaggttt       540
     atactcttat ttatccatta tgtgtgtgtt agcttaccta aatccttatt tgtattaaag       600
     tatacatttt aatgcgcaaa aaaaaaaaaa aaaagacgca aaaaatgtcc gcctcgacgt       660
     gggatcgaac acacgcttcc gaatataagc gtagaaaaca aataatccgc tcgcattaga       720
     cccctaggct accgattggg ccaattttct aaaatgtaag gcgatttttt cttagtttga       780
     aagaaaaatt tctgaataac agaaaatttt tctaaaagtg gataacaaga ggagttgatc       840
     taatcagggt aagtttttct tattatttag aaaaatattt ctgaaaaata gaaatatttt       900
     ctgaatttca aggcgatttt caaagtatgg cgattttcta aaatttaggg cgattttttt       960
     tctgagtg                                                                968
//
ID   EnSpm-N1_LMi repbase;    DNA;    INV; 1559 BP.
XX
AC   .
XX
DT   25-JUL-2014 (Rel. 19.11, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1559
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2909-2909 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1559 BP; 541 A; 259 C; 307 G; 451 T; 1 other;
     cacaggtctg cgacataaaa attgtttcaa atttaataag tgatttttat agtgttttca        60
     acgctgattt cgggaaaaat agtgaaaaaa attccatcac gtacaggtat ttcacaaact       120
     gcttgtctag ttttagcttt tttcgatatt tttatacata tttcagcact ctagtgagtt       180
     tgaattttgg tttttaggat ctccataaac tgttatttag ccgtttttat actagatata       240
     cgtcaaataa agagtttgta tctttcttct ctcaagaagg tgacctggtg ttctgcagtg       300
     atgttcctgg acttatggca cgtttcaaaa tagaatatgc tcctgatgag tggagacttt       360
     ttattgattc ttcaaaaaga agccttaaag cagtacttct acacaatggc aataagtatg       420
     cttccatacc agttggacac tcggttcact taaaagaatg ttacgaaaac cttgaactgg       480
     ttttaagcaa actctgctat tcagaccaca aatggacact atgtggtgat ttaaaagtga       540
     tttcaatgct gcttggtcaa caaagtggct atacaaagtt cccttgcttt ctctgtgaat       600
     gggacagtag agacagaaag caacactaca taaaaaaagc ttggcccttg agaaaaacct       660
     tacaggtagg ggttaaaaat gttgagagga aaagccttgt ggatcccaaa aaggtgttac       720
     ttccaccact tcacattaag ttggggctga tgaaacaatt tgttaaggca ttgccaaaag       780
     aaggggagtg tttcagatat ctttgtggac agtttcctgg tttatccgag gcaaagctaa       840
     aggaaggaat ctttgtcgga ccagacatta gaaaactaat gacagatccc aactttgtgg       900
     acaaaatgga aacaaaagaa aaggcgcatg gacatctttt aaattagttg ttaccggttt       960
     cctaggaaac aaaagagatc caaactacaa gacaatcgtc gcagacatgc tcgacaactt      1020
     taagaagctg ggctgtaama tgagcattaa agttcatttt ctccactcac atcttgacta      1080
     cttccctgca aaccttggtg atgtaagtga agagcagggc gaaagattcc accaagacat      1140
     caaagaaatg gaaagaagat atcaaggaag atggaacgtc aacatgatag cggactactg      1200
     ctggatgata aaaagagatg atcctcaacg agtccacagc cggaaaagca ataaaagaag      1260
     cttcgacaga aagcgaaagc gttattataa ggacttatga gcttaaagag aaatggaagt      1320
     gtactggaaa tgtagtttag aacatgattt ataaataaaa taaaatttta taacgttgga      1380
     aaaaatgtga aaattgctta cattttgtta ttatacccaa acatactccc ttttttgtga      1440
     gaaaacctga cgtgatagaa aaaaatggat tgcatttttg aaatcagcgc tgaaaagtac      1500
     ataaaatcag ttatcaaatt tcaaacaact ttcaaaaaat atttttttgc agacctgtg       1559
//
ID   EnSpm-N1_NVi repbase;    DNA;    INV; 1687 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   EnSpm-type family - consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1687
RA   Bao W. and Jurka J.;
RT   "EnSpm-type families from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 941-941 (2009).
XX
DR   [1] (Consensus)
XX
CC   TSD is 2-bp long. TIR is ~80 bp (imperfect).
XX
SQ   Sequence 1687 BP; 600 A; 261 C; 267 G; 557 T; 2 other;
     cccgaatgga aataataacc gtacatttgc aatacatttc agtacgtaac tgttacaatg        60
     ctgtacattt gcgtacgttc gcgtacgttt tgagtggaat tcggacattt tttacacaat       120
     tgtacagaaa cgtacgcgaa tgtacgtgga tatatgtcgt tgtacagtat cgtgccgaat       180
     cctacatttt gagtacattt acaaaaaagg atttagatca gcatgtacgg caaaatatgc       240
     aaacgtacgc gaacgtacgc gaatgtacgt gaacgtacgc gaccgtacgt agatgtaggt       300
     aaatgtatat tattgaaaaa ttatacggta aacagtacat gtattataat attcacttat       360
     tattacattt aaacgataca gttgaaaact ggctaatagt acatttgatt ttgaaaatga       420
     aaaacagatt gttactaaaa aaaaattgta ataatcgtat tgcgcagcaa attgtttata       480
     gactaatatg gtatatcagc aattaccatt actttatcaa aaacattata tttcagacaa       540
     tacaagaaat ataagtaaca atatatgtaa taataaccga ctaaataagt atgaaaaaat       600
     tggaaattgt aatttattag gacatggccc tactgaaaaa aagcagatga caatcaactg       660
     attattagct aataatcagc tgataatctg ctggtaatcg tacgtgccaa aacgtcagct       720
     gattatcagg tgatatcagc ttaatatttt tatttaagct gatagttaca aatatgcgtt       780
     tatatgagat aaaatgctaa tgataatcag ctgattatca ggtgataatc atcaacaaat       840
     ttttaacctt tagtatattt tttcgaagtt gttttaaatt aataaaattt ataaaattca       900
     cataatgagg gccaatacgg tttttccatc cagatgataa caccaaaaca ctatggctgt       960
     gagctacaaa atttttattt tttaataatt tgatttaaac aaaaaatttt ttaaatatta      1020
     taagttccct taacaaagca atgcttacta aatatgtaaa ctaacttaag atataattat      1080
     taaataaatg aatatttttt ataaaacatt taatatgaat aaaatatctc ccgcgagtca      1140
     ttaaaaattc ccttgtgtac ttctatataa aaaaatcaga aaattaagaa atattacttt      1200
     tctgtacaat tgtgtacaaa catgtataat tgtgtacgtt cgcgtacatt tatgataatt      1260
     tgcatacatt cgcgttcrtt cacgtacgtt cgcgtacgtt cacgtatacg ttcgcgtacg      1320
     tttacgtacg ttcgcgtacg cttacgtacg cttatgcaca agcgagtatc ttttagaacc      1380
     gtaaaatttt acgtataaaa attgtatttt atctctgata atgtataaag ctgtacatat      1440
     tcgtataaat gagtatattc cagcaatttt tcgtacggtc acgtacgttg gcgtacgttk      1500
     gcgtacgttt gcgcacaatt gcgtacgttt gcgtacgatt acgtataatg ctgtattaaa      1560
     tgtccgaatt ccacccaaaa cgtacgcgaa tgtacgtcaa cgtacacaag tctacagtaa      1620
     tgtaccgaaa tgtatcacaa tcgtacggtg atttgcgtta taatactgtt gaaaatttcc      1680
     atacggg                                                                1687
//
ID   EnSpm-N1_SIn repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   11-JUL-2012 (Rel. 19.02, Created)
DT   11-JUL-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   EnSpm-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-211
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 388-388 (2014).
XX
DR   [2] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 211 BP; 95 A; 7 C; 8 G; 101 T; 0 other;
     cccgggaaaa aattttttat atataattat atataattat atataatatt tatatataat        60
     tatatataat tatatataaa atatgtataa ttatatatat tttatatata attatatata       120
     aattatatat aaactgttta tatatattaa atatatataa tttattttat atataattat       180
     atataattat atataaaaat tttttcccgg g                                      211
//
ID   EnSpm-N20_DTa repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N20_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-793
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4679-4679 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 793 BP; 239 A; 154 C; 143 G; 257 T; 0 other;
     cacccaaaaa aaagtagtca tcaatatgcc cctatttagg tgtcaatgtg acactattga        60
     gtggaaaaaa atctttgatc cgaacgtcat taaattgacc ctattctggt gtcactttaa       120
     tactttcgaa aatattaatt tgaccccttt tggtgtcaaa gagccactag ccggtgtcat       180
     tttcttagta ttaaataaaa tttgacattt gcttgaaagc tcctgtaacc attctgccat       240
     ggcaaaaatt aatatgggaa tggctcaggg gccaaggcgc ttggttctga tattattttg       300
     tgctcggggg aacgaggttc gaatcccgct cgcaacacca ttattttttt ttttttttat       360
     cagtaatcta acacaactta acatttttgt tcttaaaatg atatatatgc attttaaaaa       420
     ctttttacct actatgattt atctgggttt cgaaccgggg acctctcgca tcagaggcag       480
     acgccttacc aactgggcca tcgaaccatt ttgcgcgcga gcgaactctt gacaagtata       540
     aacgaaatcg atactcgagt aaaacatcgc cgaacttcga acttcgaaaa tcaaaaatga       600
     taattattgg gatcgatgtg aacctagttt tatcaaaatg acactattta gtatcaaata       660
     cgatttttct gaaaacgcgg tgtacttttg acactcattt gggagcaaat tgaccccaaa       720
     aatttgatcc taggggcagt gtcattttaa cccacagtta ttaaattgac actcaggatt       780
     ttttttttgg gtg                                                          793
//
ID   EnSpm-N21_DTa repbase;    DNA;    INV; 1139 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N21_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1139
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4680-4680 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1139 BP; 415 A; 192 C; 146 G; 386 T; 0 other;
     cactcataaa aaaaatcgcc attgattcaa gaaattcgcc attgattcaa gaaaatcgcc        60
     tatgattttc agccaacggc gattcgccat taataatggg aaataatttt cttgaattta       120
     cggtttcgcc tttctaaaaa tcattaccaa tttttctgaa ttttacggca aaaaacccta       180
     aaattaagaa aaattttctt aaaaatagaa aaataaaagt atatttgttt ataacctttt       240
     tttttaattt tgtccgactg atttttttat cacttttgca tttaggtttg ttaactaaga       300
     ggaaaccttt catgttttag tgacaatcat atcgtgacaa taggttacat ttttatttat       360
     ttatttttat ttatttattt aatttaaatt caaatttatt ataaatgttt attaattaca       420
     atgcatttta agtacagaaa aaactttttg taaacatata aaagacttaa ggaaaaattc       480
     ttacctcgac ctgaactcga actcgcgacc gctcacacca tagacagaca tcttaaccac       540
     tcggccacgc gtgcttcttg caatgcaatg gcttaagatg cctaaagtgt taacggtcgt       600
     attattggta taccaattac aattacttta attaaatctt gttaacaaca gttttaacaa       660
     tttagtgaat ggaaaaccaa aacaaaagat tttttatacg aaaaaaaaaa acaataacta       720
     ttaaaaaaaa aatatcagac tcgtccctgc gtgaagtcga accgcggttt ccgcggcgac       780
     ttttgtacac atgtttagtg tccgaacgcc tctaacagct aggccaccat actagaacac       840
     taaaaaatta cacaactttc ctaaaaaata ggtatttatt ttctagaatc aaaggcgatt       900
     tcgccattaa ctcaagaaaa aaggccggaa aatattgcca ttaatccaag aaaatatcgc       960
     cattaatcca agaaaaaaat caactattct tcttcttatt cattttataa aaaattttat      1020
     ggcgaatttc cataaactta agaaaatttt tctataatct agaaaaattt tcttaattca      1080
     atggcgattt gaaatcacgg gcgattttct aaaattaagg gcgatttttt ttctgagtg       1139
//
ID   EnSpm-N22_DTa repbase;    DNA;    INV; 760 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N22_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-760
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4681-4681 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 760 BP; 253 A; 143 C; 133 G; 231 T; 0 other;
     cacccagaaa aaaaagaacg aaaaaaatca agaacatttt tcttgattta cgaacaatcc        60
     gttcgctatt tttcgttcat gaaaaacgaa cgccgcgggg tcaaatcatg aacttattgg       120
     taaaattatg aacgcgtcac agaaaagtgt tgagctttga acgattgtgg tcagattatg       180
     aacaatggtt ctgaaattgc gaacgctgtt cataaactat ttctttcccg gaccgaaaaa       240
     catgcaagtc tagtgccccg tttgtccgta cttgaaaaat tggttccgtg gtccagctgt       300
     tagaccgtcc gcctttgaca tagagtagcc caggttcgag cccgcgagag gacgtcgtga       360
     atcgtaagtt ttaataaaat attatttcta atgttaatat gtacttctaa taataaataa       420
     actatatgac aacaacaaat tctaaaatat aacatgtatt aaaaataatt caaccactaa       480
     aaaaaagaat attaaataca tctctaccag gcgcacagta aaaacagcaa gtggcaagta       540
     cagaaatctt gtttattttt gtttttttta tgaacttttt gttctcaaat tgaccccaaa       600
     atgttctaaa agtgacccca ttcgttcgca aagcatgcca aatatttcgt tcaaatttta       660
     tgaacaagcg ttcatgaact gacaacaaac gggcttacgc actttttgac cccgtttggg       720
     cttgattttt gaacgtttcg aacggatttt tttctgggtg                             760
//
ID   EnSpm-N23_DTa repbase;    DNA;    INV; 854 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N23_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-854
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4682-4682 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 854 BP; 357 A; 129 C; 105 G; 263 T; 0 other;
     cacacaaaaa aaaaactatg taaaatcaac tatttaatag tgaaaactgc cccaacccat        60
     aaaaaataga aaatgcccca aaaaatagta gattacctat aaaatagtag atgacctaca       120
     aaatagtatt taacccgaaa aaaattgttg ttttttttta attatgtttt taactttttt       180
     tatttttaat ttaatttgtt atattaattt atatggaagt tatttataga cacttacatt       240
     tcacagatac ttaaacttac aaatcaggtt ttttgcctcc gctgggaatc gaaccggggc       300
     cgcaaccatc ggagtcaagc actctaacca ctaggccaca gaagaatgct ttttgtagag       360
     gaaaatctat agacttgaaa tcaacattta acaaaaaaaa aaaaaaagaa aaatatcatc       420
     tgcaaaagcg ggatttgaac tcacgaccca gagattatga gtcggatact ctaaccaccc       480
     taagtccaga aaaatagttg acatacaatt tataatcgta tttttaaaac aacaaaatat       540
     atgaaggaaa aaaatagttg tgttacgata ttaattgtgg tgttactatt taatgcccca       600
     aaaaataaaa caacaaaata cacgcaaaca aataaaatag ttttgctacg atattaattg       660
     agacgttact attaacttgc caaatgaata aaacaacaaa atacatgcaa atttcgtaaa       720
     taggttttct actattttaa ttgttaaata ctattcaatg acccaaaaaa taaaacaaca       780
     aaatacatga aaaattcaga aaatagtgaa atactatttt tctatgttaa ttttacatag       840
     tttttttttg tgtg                                                         854
//
ID   EnSpm-N25_DTa repbase;    DNA;    INV; 870 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   06-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N25_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-870
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4683-4683 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 870 BP; 292 A; 145 C; 139 G; 294 T; 0 other;
     cacccagaga aatgtgggac tattttttag gtaacgtatg acctaaaaaa tttaaataga        60
     ctaaaatttc agatttaggt aatgggttac ctaaaaatat tagcatgtgg actatgttcc       120
     tactttttag gtaaagctaa agagattttt ataggccatc gtaaccttca aattggtcca       180
     taagacctaa aatttaggaa taatttaaag tcgattatca ctcacaactt aatacaaata       240
     ttggtcccta atattaataa acaaattatt cggtttttta agtttaatgt taaaaaattt       300
     tttagacttt tcttaaagct agtgatggaa aagtttcaat atataaaatc aatacctacg       360
     tggactattt tcctactttt aaggtaatag tgccctattc taaaaataga attcgcctga       420
     gccccttgaa gcaggctttg gttttgccgc agggccttta agtagttccg tagaccagag       480
     gctagcctat tggactctcg cgcagaagac ccgggatcga ttcccaccga ggacaaaata       540
     aagtgattgt tttttcagaa agataaaata tttgcttttc cgaataatac aatataagca       600
     attaaaataa tcaaatatgt tactatcaat agtaaaaatc ctagcttttt tttaaatacc       660
     taatatttag gtaattctga cctaaaaatc tagtccacta gccatttttt taggtaacca       720
     ttaccagaaa taaattcaag actgcgtaca aaatatagtc cacatggaca acattttagg       780
     taatgcatgg ccttggcgcg tttttctggc catatttcct aaaattttag gtaattaggc       840
     ccctttttag tccattttgt tttctgggtg                                        870
//
ID   EnSpm-N26_DTa repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   06-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N26_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-684
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4684-4684 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 684 BP; 248 A; 122 C; 108 G; 205 T; 1 other;
     cacccagaaa aaaaagaccg aaaaaatcta agaccgaatt tcttacatta ctaccgtttt        60
     gttcttttat ttttttaaga ccatattctt atattgatac caaagggtat tgatttaaga       120
     ccagtaaatt tagatttaag ttgaacttat gcacgcgcgc gaaacacggt gcgatggccc       180
     agttggtaag gcgtctgcct ctgatgcgag aggaccccgg ttcaaaaacc ggataagtca       240
     aagtaagtaa aaagtttttc aaatgtattt caattaacat ttccttwata actttaagaa       300
     caaaaatgta ttaaaaaagt taagttgtta atttactaat tacaaaaaaa aaaaaataag       360
     ttgtgttgtg agcgggaatt gaacctcgta cccccaaaca caaaataata ccagaatcca       420
     gcaccttggc ccctgggcca tggccttatt atttccttcc atggcagaat gcttacagga       480
     gcattcaaag aaatttattt ttgtactaaa aataaatata aatttaagta cgtttcgttc       540
     ttagagtaag aacagcggtc ttaaaaatcc gttcttaaaa taataccata aattcttata       600
     atgataccaa acggtataaa gctatttttg agactcaaac agacacgttt tcagacacaa       660
     tcagaacaat tttttccctg agtg                                              684
//
ID   EnSpm-N28_DTa repbase;    DNA;    INV; 1047 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   08-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N28_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1047
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4686-4686 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1047 BP; 328 A; 173 C; 215 G; 331 T; 0 other;
     cacccagaaa aattgagaac gaaaaaaatc aacatcgacc gatcttgatt ttagtattcg        60
     tattctcact tttttcttct tgatatcaag atgaaagcag tgttgattct agtattccca       120
     gtcaaagtca atctcagttt ttatgttgtg gaagagggac gtgaggaaaa gacatcgaaa       180
     aaatgagagg aaaagggcgg agaggccgaa ttcctctctt gtagctatcg ggcagtcatg       240
     cttcttgata tcggtagcct aggggactaa agcgtgcgga ttatatgttt tgtaagcgta       300
     tagtcggaag tgtgtgttca gtcccgcgtc gaggcggaaa ttctttgcgt tttttttttt       360
     tttactcatt aatatttata tttaatacaa attaggattt tgttaatcta acacacataa       420
     atggcttaat aagagtaaaa accaagaacc caagagaaca aaatgtgatt gaactttgta       480
     cagcgcctca tgtgatgctt ccatggcgca gctggtagag tgtttgactg caaactgtga       540
     ggcaacgggt tcgattccca cgaccgacca aaggtgtttt tcccaagata gtaagttatt       600
     tgaattttat atttatcatt tgttaattat ataataattt cagttattgt ttcagttaaa       660
     atttgaaact aaatgtgttc ttatatacga acatagtata gtgtgacgtc atccatgtgt       720
     ttaaataaag gaaagaaaaa taagttgaga aacgggggga accaacaaca acaccgacgg       780
     ggacaggagg gggtgcaaga ggcaaaattc ccgattcctc aattattttt ttttcttctt       840
     cttattcaat ttgtatctta aaatcgacat cgattcgatg ttgaaaccga gaagacgtca       900
     tctcgatatc gatagcacac atactcaaaa accattctca aaaccgagat gacatcgatg       960
     ttgattttag tattttcgat ctcggctagg ttttgtgatc gaaaatacta aaatcaacat      1020
     cgatgagaac ggtttttttt ctcggtg                                          1047
//
ID   EnSpm-N29_DTa repbase;    DNA;    INV; 958 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   12-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N29_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-958
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4687-4687 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 958 BP; 354 A; 120 C; 144 G; 340 T; 0 other;
     cacagaaaaa aatatgacaa aatatcaaat tgatatttgt tggttaattt gatctttttt        60
     aaggatcaag tttcgtcata tcattctaac atgaagaaat attattttga tcttatttca       120
     tattaatttt tgaaaaaaaa tactgaattc ggtatttaaa acaagtatat ttacaattta       180
     tatgaaatcg tatgactttg atatgaaaaa atatcaaatg tcgtttcgaa tttagttcga       240
     aagggagaaa tagtgttcca cagtttacaa cactgtacca atgtgagatt gtgcagcact       300
     gcaaaaacag ctggcccaac tttgagacca aaaatattcg agaacaaggt gtttttattg       360
     tcaaatgaaa tcaatttatt tttttattga gtgctaagtc gaaacattac aaagttgtgg       420
     tgattttaac tttgccgtcg agttagcaca caatttaaag acatttcggt tctgaatgtg       480
     cgtgtgtgtg tgtgccggcc gcagttttac gttgtgtgtg tcacaggcaa aactaaaata       540
     ataaaatatt gaagattttg ctggcccacc tatacatatg tacaccgact caaaaaaatg       600
     tgaaatgatt agaattaaat tgttttaata taaaataaaa atttctgttt tactgggggg       660
     tactaatata cacgaaataa tatcattttg atgaacaaaa ttgatataaa aaatatcatt       720
     ttgatgacaa aaattgatat aaaaaatatc attttgatga ccaaaaagtt caaatgttat       780
     tttaaacact aatctttctt aagattgaat tgatatttaa aaatatcaac ttgatattct       840
     cgaaaatatc aacttgatat gttcgaaata tcaatcttgc attaattaat atcggcccaa       900
     atttgatatg aaataatgtt aacttgagtg caatttcata tcaatttttt tttctgtg         958
//
ID   EnSpm-N2_AAe repbase;    DNA;    INV; 1075 BP.
XX
AC   .
XX
DT   28-NOV-2018 (Rel. 26.01, Created)
DT   28-NOV-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1075
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1075
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 150-150 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 1075 BP; 320 A; 195 C; 196 G; 364 T; 0 other;
     cacacttaga ttttattacc gaagtcggta aaattttact gggtttttga acagcagagt        60
     taagtcggta atgttttata agtaccgaaa actccgcaaa gccagaaaat gttgaactgt       120
     caaaaaagta ccgactaagt cagtaaacat ttttgcggaa cgttactgcc tttctcagta       180
     tttttttttt atttactttt gtttactgat tttttcagtt aaacgatttt agtactacgg       240
     gttgttctca acatgaacat aataataata atttcatcat tcccgttttt atgctccagt       300
     tcatcccatg ttaggaaact gatgtccaaa catttcctcg caacgcttct cacattcggt       360
     ttacatggca ccctggctgg acagagactt gcccaatcta gcttccggca agctggctcg       420
     tcgagaaaag tttgggatgc gttgccctac aagctaggat tgaaaaatca taacgaatat       480
     gatgcccacc agaatcggag cgtccttccg taagttttgg atgcaaagct catgtcgctg       540
     cgcaatccaa gcaccaatta aacacattgt tcagcttcgt gtgagttcag ctgcacaaac       600
     attgtcggaa gaccgttgtg atttttattc atcaataaat ttccgattac ttaccatgag       660
     ttgcgactgg atacaacaga gctggatgtt tttaaatatt aataaaatga gatttccttc       720
     aagaaaatgg aaattttcat caggaaacat gctattgcag gagttttttt tttttgactt       780
     ggcagatagc aaacgttgtt tattgttttc atttcatatt aacgaaaact cggtaaaaat       840
     aatcgatact gattagtcag tactatcatt ttactgactt tttgctcttt ctcggcgaat       900
     ttgtaatttt gcggtcttat cagcataatc gtttactgag ttcagtaaat taggaaaaat       960
     attactgaaa attagtaatt tcaacaaaga gtgctgaaat ctcagtattt tttgtggttt      1020
     actgatcgaa gaccgtaaaa taaattaccg aacagcgatg tcgtttttaa gtgtg           1075
//
ID   EnSpm-N2_BTa repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-212
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 511-511 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 212 BP; 72 A; 31 C; 34 G; 75 T; 0 other;
     cactgaaaaa aaaagtagct tggatcaagc atgataattc ttgaatttgc cgccaagaat        60
     tttctttatc ttgctttaag ctgacttttt cttgattcaa gaaaaataat gcttgggtta       120
     agcaaaaaag tagcttatat taaccagcaa aattcttgat ttaagaagaa atacttcttg       180
     gcggcaaatt taagattctt ttttttccag tg                                     212
//
ID   EnSpm-N2_DEl repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   10-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Repeat from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   REP-2_DEl; EnSpm-N2_DEl.
XX
NM   REP-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-398
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 578-578 (2012).
XX
RN   [2]
RP   1-398
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~86% identical to consensus. It is similar to EnSpm-N1_BEl
CC   (REP-1_DEl). 13-bp TIRs.
CC   [2]: Sequence updated and reclassified and renamed.
XX
SQ   Sequence 398 BP; 186 A; 28 C; 35 G; 149 T; 0 other;
     cactgataaa aaatggaata gtaaaaataa atatctgact attgaattta aaattgtata        60
     ttaaatatta aaattaaata tgaaatcata atattaaata caatgcatat taaattacat       120
     gatttaatat taaaaattta aattaatgtg gaaaatatta gatttaaaat agttcctatt       180
     tgatttaaat gcattttatt taagttaaat atggtttaaa tttaaattaa attttcagat       240
     atttaaatca aatccgaaaa tagtcaaata aaaaattaaa caatttttta atattttcat       300
     atttaaaata actaaaaacc gcaatggatg aaaatcaaag ggaaaatatt taaattgaat       360
     acaaaaatat ttggatttct acattttttt taccagtg                               398
//
ID   EnSpm-N2_DTa repbase;    DNA;    INV; 1501 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   21-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1501
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4668-4668 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1501 BP; 516 A; 238 C; 210 G; 537 T; 0 other;
     cacccagaaa aaaatatgga cttaaaaccc aaaaaatgga cttaaactaa ggtaatatgg        60
     actaattttg gacctaagga atcttagact tgttttaagt cctaacacac tgacttgttt       120
     taaggccatg atggtcttaa aaaaagtcca tattacccaa aaatttaagc atttagatat       180
     tcatctaaac ttacaaaagc agttagccac tcgaaaattt aataagggcg tagcccagag       240
     gaaactatgc cagttcccgg ttattttgaa ccgggttcga gtccagtaca agacatgttt       300
     tatttttttt tttacattta ttttttaatt ttattgttgt atttattttt tattgttatt       360
     agtaaatgaa ttttacaact gaaaaaaact ttcaactcat ttgcaccagt gggattcgaa       420
     ccggggtcct ctcgcttcag gggcagacac cttaccagtc acaccatcag acactgttaa       480
     gtacatgtgt ctaagcgaca cataaagtca tttttaaaat tttttattag ataaaaatta       540
     ttaaaatatt atgtgtacgc cgcactctct tactaagcta acatctcata tggataagat       600
     aaacattgtt aatttaacag catagctaac atatttatga ctatttttta tatacagttg       660
     tgatagatga aaatatactg atatatactg ttgagaatac tcttacaaaa attcagaacg       720
     atcggagcat tagaaccgaa gttgtagcta tttatagcgc actaccacta cctgcacatc       780
     ggccgttaca aacttgaaac tttaaacgcg attatctcag aatcttgttt tttcgaaatt       840
     acctttgcgg tggacacgat tactataaaa ctattaatcc gatcgacaca aaattgacca       900
     cttatttatt ataacaatag ctagtccttg aacgaaggat ttagagcgtc tttaattgca       960
     tattattttc cttttaggga tacttttcct aaaaatacat tgaagccaaa tcatcaaact      1020
     tgtggctgtc catacattaa gtaattagca aatgattact gtatggcaaa aaaaaactaa      1080
     atgtatagtt ttatacgttt tcgctatata aaaaatcaac acaataaaat taattaaaca      1140
     ttttcttgaa aatataaaaa caaatacata tattattgtt tatagactat tttttttaaa      1200
     tatactcata tatgggtaaa attttgataa gtaccaagat cgtaatttcc ttccgaataa      1260
     taaaaaatta tttgttttta ttttttgtta aaaaaaaagt ttttttgtgt tgtttatggg      1320
     catgtgctat tttttaggta gtggactata tttcacgatt ttaattcctt aaaatctatg      1380
     gcctaaaatt gaacatttat ggccattttt actattttta agtccacaat ggccttaaat      1440
     caccatttta ggcaatgtag tccatgtttc cttaaatcta ggaatttttt ttttctgagt      1500
     g                                                                      1501
//
ID   EnSpm-N2_RPr repbase;    DNA;    INV; 1180 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA seqeunces: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1180
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3230-3230 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1180 BP; 434 A; 153 C; 218 G; 375 T; 0 other;
     cacaggcctg cgatggaaaa attgtctgga atctattgtg tgatttcaat agattttttg        60
     gtgctgaaaa tgggaaaaat atttaaaaaa ttccatcacg taaggttttt ccacaatttc       120
     ggattttttt gtatactaca ggtgttggcc tattgtaaag gatcattttg taaaacaatt       180
     atttaaatga ataataataa gtatttttag tcgtgatgat gtaagaacgt aatactctga       240
     ataaagtatt gtgaattata atgataaaga agttaaaagc aatggtaaat ttataacaca       300
     actgtaaata caacctctgt cacgtcaaga catgtctgat cctgttactg cgcgtctccc       360
     tcccaccacc aaaattttat ttatttattt gttgtacaag tgttaaatta aattgcaatg       420
     gcttcaagag gttgtgtcaa tgcgcctgac tctttttgtt atatttgtgg taactttacg       480
     gttaaaaaac aacaaagaaa attttgaatt taaaatggag gaagcagaaa aacaagcatg       540
     gaaagccttc aaggaagtag ttactaagtt tcttggcaac aaaaaagatg aagattataa       600
     aaatattgta aagaatatgt tagaaaaatt taaaaattta ggctgtaaca tgagtttaaa       660
     ggtgcatttt ttacattcgc accttgacta ctttcctgca aatcttggtg cagtaagtga       720
     ggagcagggg gaaagattcc accaagatat aaaagaaatg gagaggagat accaaggaag       780
     atggaacgta agcatgatag ctgacttctg ttggatgttg aaaagggacg acctgcttcg       840
     agaccaccga agacaaagca ccaaaaggag catggaaatg aaaaggaaaa gattctacaa       900
     ggacttttaa agaattaagt agtattttac tgagtatttt cattatattt aattgctttt       960
     taaagtaatt ttacttgtcg tatcacttgc aaataaaatc taattttaaa tactattgct      1020
     ttttcacaaa ttttttgtaa aatgtgaagc gattttgtga aaaattctta cgtgatggtg      1080
     gaaaatggag ttcatatttg gatttagcac acaaaaatac ataaaaatca agtatcaaat      1140
     ttaaaacaat ttttcaaaag ttaaaaaacg caggcctgtg                            1180
//
ID   EnSpm-N30_DTa repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   12-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N30_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-493
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4688-4688 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 493 BP; 181 A; 39 C; 60 G; 212 T; 1 other;
     cacagaaaaa aaatggtaat ggtcaatttg atatttttta aagatcaagt tattcatatc        60
     attttgatat gaataaagat tatkttaatc tttttttata ttatttgctc aaaaaatact       120
     aaatttggta ttttttatga tatgataaaa tatcatgttg atatgtttga atcttaaatt       180
     tgacataaat catatcggct tttattgata tgaaataagg tagaaataac catatttcaa       240
     aaaaaatggt aatggtcaat ttgatatttt ttaaagatca agttattcat atcattttga       300
     tatgaataaa gattatgtta atcttttttt atattatttg ctcaaaaaat actaaatttg       360
     gtatttttta tgatatgata aaatatcatg ttgatatgtt tgaatcttaa atttgacata       420
     aatcatatcg gctttttatt gatatgaaat aaggtagaaa taaccctatt tcatatcggt       480
     ttttttttct gtg                                                          493
//
ID   EnSpm-N31B_DTa repbase;    DNA;    INV; 377 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   13-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N31B_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-377
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4666-4666 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 377 BP; 114 A; 64 C; 73 G; 126 T; 0 other;
     cacccaaaaa aaactcgata tgaatcgtag gtcaatttga ccttttttaa gatcattttt        60
     aacttgatat ggggccaggt aaatgtgata tggtcgacca aaacttatac tagtgcgagc       120
     gagaaaacat gctttcgaag tacgtcagtt cgaatttcga atacgtcttt ctcgcttcca       180
     ctcatgtcat tttgctcgcc atattgattc ttgcgctctt tttcgaagtt agagaatctc       240
     cgagagagag aattcggcaa aatgatatta tttaatgtaa attttatgaa tatttcaggt       300
     aaaaacgata tgagtaggaa taaccagaaa attacctgga cttatcgatt ttacggcgac       360
     gtgctttttt ttgtgtg                                                      377
//
ID   EnSpm-N31_DTa repbase;    DNA;    INV; 310 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   13-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N31_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-310
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4642-4642 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 310 BP; 89 A; 67 C; 56 G; 98 T; 0 other;
     cacccaaaaa aaacttgata tgaaacgatg atcaatttga tattatgtgg tatcaatttt        60
     gacttgatat gcggcacctc aattcgatat gctcgaaatg taaacaggcc agttcgaatt       120
     tcgaatgcgt ctttctccct cccactcacg taactttaag tcgccacttg cttcttcctc       180
     tctttttcga agtcagagaa tctccgagag agagaattcg gcaaaatttt tggtaaaaac       240
     gatatgcgta tgcaatacca gaaatttacc atgcgcatat cgatttgacc ccgacgtgtt       300
     tttttgtgtg                                                              310
//
ID   EnSpm-N32_DTa repbase;    DNA;    INV; 370 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   13-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N32_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-370
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4661-4661 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 370 BP; 164 A; 30 C; 39 G; 136 T; 1 other;
     cactgataaa aaaatgaaat agtaaaaata aatatctgca tattgagtgc aaagatgcgt        60
     agtacatatt tgaattaaat acaaaaatat ttaatataaa acatattaga ttgcttgatt       120
     taatttgaaa atatttcaat taaggtcgaa tatattagat tcgttgttaa tcatatttac       180
     attaaatatt ttacgtcatt aaaaaaaaca atttcatatt taaatcaaag tttaaaatat       240
     ttaaattaac tatacatgtt aaatgtaata ttttcatatt taaaattaat aaaaaccgca       300
     atggatgaaa agcataccga aaaatattta aattgaatat gaaattttgg attagttttt       360
     twtatcagtg                                                              370
//
ID   EnSpm-N33_DTa repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   13-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N33_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-324
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4662-4662 (2021).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 324 BP; 111 A; 50 C; 51 G; 112 T; 0 other;
     cacccagaaa aaaaaattac cttgatttaa gtccacgttc cttaaattaa ggaacgatgg        60
     actaaaaatg gctaaataag gctattcatg gacttaaaag ttttcatccc atatacattt       120
     taagtctaca tggactaatt ttggacttaa ggccatatgg actgttacat ggacttaggt       180
     ccatttttag tccatgtaga cttaaaatgt atatgggata aaaattttta agtccatgta       240
     tagccttatt tagccatttt aaagccatta ttccttaaat caaggtcaat ggacttaaat       300
     taaggaaatt tttttttctg agtg                                              324
//
ID   EnSpm-N34_DTa repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   16-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N34_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-306
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4663-4663 (2021).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 306 BP; 112 A; 48 C; 43 G; 103 T; 0 other;
     cacagagaga atttttcatg aacggtgcac ttaaattgag aattttctac tcaaaataaa        60
     accaagtact cactttaagt acaaagtact tactttcagt accaattttt taaataaaat       120
     accttggaat tgagtctttt tagagatttt tttctcaaaa aacggggaca aataagagag       180
     aaacaacatg gtgaaagaaa taggcttctt ttttcaaaat ttgtccacaa aatcagtatt       240
     tcctcaaatt gagaatacaa atacttaatt tgagaacgtc agtcttcttg cttaattttc       300
     tctgtg                                                                  306
//
ID   EnSpm-N35_DTa repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   18-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N35_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-305
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4664-4664 (2021).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 305 BP; 114 A; 38 C; 35 G; 118 T; 0 other;
     cacccaaaaa aaaaatcaaa agtgttaact ctctaagcgt tgtattaaaa atatactaga        60
     tgtagtataa aaaagtggta ttgacctaat actaaataat acaaattcta tactcagtag       120
     tattaatttc atatgaaata ttataaactt aatattttgt agtttcattt ctataccgaa       180
     agtttcaatt taatactttt gaaagtattc atttaatact catcttattg atgcaaattt       240
     gacactcaat agtgtagaat tcatgtaaca atagtttcgt ttctatgact attttttttt       300
     gggtg                                                                   305
//
ID   EnSpm-N36_DTa repbase;    DNA;    INV; 619 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   18-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N36_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-619
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4665-4665 (2021).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 619 BP; 202 A; 98 C; 91 G; 228 T; 0 other;
     cacacaaaaa aatttgcttg gtaaaattga ccaatgaaga tagttcagta actataaaaa        60
     atagtacttt aacaataaaa atagtcgtcc gtgtatttgt ttttgctttg cgtaacgtaa       120
     cttctttagt ataaaagtat gcaacagtaa ttttacaaat cttctgcgat gcctttttta       180
     taattcccaa ctgggtctag cccttcatga accaagccca agtcagattc tgagtcatta       240
     agacttattt tctgtcttaa gtctttaata tacttccaca ctagctggaa gtcaagtgca       300
     acccgcacct ttatgaggtg taggataaag tcacttttgg aaaaggtaat tggacaacta       360
     cctttttaat attacttata aattactgtg aaataactat aaataattgt atatttacta       420
     taaaaatagt aagttaacta caatttatgg ttcgggcaca ttctaccctt ttttacaatt       480
     gcataactat tttttatagt aacccttacg tttacgaatt acgtaagagt aacaatttac       540
     ttagtagaat tgacaatttt tatggttggg gcctgtttga caattattac agttgatttt       600
     accaagtttt ttttttgtg                                                    619
//
ID   EnSpm-N3_AAe repbase;    DNA;    INV; 791 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 26.01, Created)
DT   29-NOV-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-791
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-791
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 135-135 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 791 BP; 253 A; 143 C; 151 G; 244 T; 0 other;
     cactcaagaa aacagctccc tggaatacat gtgcagttgc acatacctgg ttcgatttag        60
     ctatttcatt atttccattt gtatcatata agcagtatat cattagcgaa taccttacat       120
     tagtgtggct cttatatatc atttgagtca catttaacgt atgtgcaagc tttataccgt       180
     tccaaagcac attgcgtaaa caaaaatggc agctggaagg aaagtttttc gcagtttcgc       240
     tctggagttg tgattaccag gagggtcctt aactgcaata gaatgtatat gacgttaaaa       300
     tggagaacat agaggatatg aatcgaagaa agtgttgtgg taccggaaaa ggtagccagc       360
     aacaatgcta catgaaacga cacaaccagg tagacaatca tcacctgatg acgattgtct       420
     gcctgactgt atcggttgta cagctatctt ttccggtacc acaatattta atatattatt       480
     tcatcggaat cactaacaaa ttccaacttt ttaaaagttt ggaagttagt tgtgatttta       540
     ttcagaatat ctctgatcca tggagaaaat caccccttca agtaatgtgt atcttaaatg       600
     cattcgataa aagtgaaaca tgaaatgtat gtgttaggtc cattgattac atttgagtta       660
     atcatgcttt caatgaaaag aaactttggc gatagtgtat tgacttcgca catactctcc       720
     atgtgcaaac ccccattgca aaaatccatg taggttggca catgaatcaa atgggaactt       780
     tatcttgagt g                                                            791
//
ID   EnSpm-N3_BTa repbase;    DNA;    INV; 414 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-414
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 512-512 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 414 BP; 147 A; 59 C; 78 G; 130 T; 0 other;
     cactgaaaaa aaaatctcgg tgtatttact aagaaaaggg taaaattacc aagaattcag        60
     ggttctattt gatcccagtt ttttcttggt aaaattacca tttatggaat tggtaatttt       120
     accgagaaat ctcggtaaaa ttattgaact ttctcggtaa ttttactgga ccttggtaaa       180
     aacgccaata ttttttatcg actgtggtag aattaccgag ataaaatggc aaagttaccg       240
     ggaattgatt accaataaaa gtggtattct tacctgaaaa aacagtaaaa ataccggttt       300
     ttaggtaagc ttaccagtct gtcttggtaa aattaccaat aattggtaaa aaaaagtgag       360
     atggtaaagg taccaacgga ccttggtaaa aacgccgaga attttttttc agtg             414
//
ID   EnSpm-N3_DEl repbase;    DNA;    INV; 1012 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1012
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4031-4031 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs (mostly TA).
XX
SQ   Sequence 1012 BP; 355 A; 151 C; 155 G; 351 T; 0 other;
     cactcataga aaaaatcaag aatttcgatg tcaattcaag aacgaacgat gtcaaaagta        60
     gggtaaattc gaattttttt gattcaagaa cgaaaggcta tattcaagaa cgaattattc       120
     aatcccgaag ttctacattt gagaacgaac gtcatcagtc caagtactca aaagtgcttg       180
     aagaaagagc gaaagatatt aatttgagta cgaaaaattc ttaatgcaag tatgaaagtt       240
     tcttaactta aattttttta aaaaatgttt ttttttgtct ctttctcttt tttttctttt       300
     ctctttgact ccatatgaaa ttagaatgaa agagaatatg ataaattgat atgtaaagga       360
     aacagaaaag caaaccttat ttattttact gcaagtcgac ccaaccggga ttcgaaccga       420
     ggcctttgga ttcgtagacg cattagccgg ttgcgccaca ctggcatcac aatttgctgt       480
     gtactacgcc cgtataagaa ttcgaagcaa tttgtttgca atcaaatagc ttttatttgc       540
     tatacttttg aggtcaacta gataaaaatt taaataaaat tgaacgtttg aaaaaaaatc       600
     ataaaaacca aaaaaaaaaa aaaaattgat aactttgtct gggatttgag ctcgggttct       660
     taatagctta cccaatgttt gatgttccaa gacacttacc ccctaggcca atcattttaa       720
     gaacgaaaca ttcttgtttt aaatttatag ttcttgtttt tttgttaaat taatagtttt       780
     taatagagtt tactgttttt aataattctg atattattta caaacactat aagcagggat       840
     aaagcgaaaa atatcgtttt ctctatgtat taaaaaaaac attttaaaat attattatca       900
     agtatgactc gtacttattc tgtacacgtt cgttctaaaa attttaagaa ttattcgggc       960
     gattttcaag aacgttcgtg ctaaaattat tcgttctact tttttctggg tg              1012
//
ID   EnSpm-N3_DTa repbase;    DNA;    INV; 1739 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   22-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1739
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4654-4654 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1739 BP; 586 A; 292 C; 286 G; 573 T; 2 other;
     cactcaaaaa aaaacggcgt gctaaattca aattttttat tcttgatttt aatttattcc        60
     gagatcaaaa atttcaatcc cgttttggat aaaaaaggct taattttgta tttttgggat       120
     tactttaagc ccgagaaatt tatgttatcc taaaaaagat tgtattaata cttttttatc       180
     cgaatctgga ataaaaattt gtactttaag tctgaaaaga tatatgtcat cctaaaaaga       240
     ttaaattatg acttttttat ccgaacggga ttaaattccg ggctgtcata taaaattcga       300
     tccgacttgt tggttgaaaa agatttttgt aagatcccaa caggaattca aaactgttca       360
     caaacctgct tttttttata aaccaaatga tttacaaaac actactacca cgtttaatgt       420
     ttttagtcta aaggagtaac gttgtttttt ttccaacaga tggcactgca tcgtacagta       480
     ataaaaacta actaataagg tagcgccatc taaatgtgaa aatgtgtaaa ttggaaaacc       540
     ttagccaaaa ctttaatttt ccgataatta aagaccccca actcatacca acactaatcg       600
     aaccaaactg gtaacttctc gtgtagactg ctttgactta tacgtcaata attcaaaacg       660
     tttaataaat cagtgctatt tgaattcagt gtgtccgaga gtcagttcac tgtgtggaaa       720
     gtgatccggt aatagtgagg ccaagctaag ttttgatgaa ctggaagacg aagacgatac       780
     aacaataata gctttattag cagaagaagc attacagtgt ttatgaggta aagtatacac       840
     attttcatgg gcaaagctgt tcaacatgta aaggcgttgt tttgtaaaat taaaaccatt       900
     ttttgactct aattttttat tttcgtttat aaatagattg tcaagattta attttgaaaa       960
     tgctgactaa catgcgcaaa tccacgttaa ggccctaagg gataaattgc gcctcactct      1020
     tgtgaaaaaa taatggaatg aaaaataatt gaccaacaaa tttgttttaa gaacaactca      1080
     ccaccccaca tccaaatcct ggatccgcca ctgctgctta cmattctcag cccaattcaa      1140
     atcgagtaac aatggaaaga ggagtgaaaa agtgaccctt gctggcgcgg aggaaagatt      1200
     atttcttcag ctgacaacaa tattcaacta tcaagaccgt atagaggaga ttatatccaa      1260
     aaacaactcc ttttctgata gtcaagggca aataacacct tccttacggt tatatccaca      1320
     aaatgatatg tagtttagaa tcaagtatat ttaatattaa aataaaaaaa ttaaataaaa      1380
     acataatttt gtaaattttg tatcggtttt tgggtttttg gggatttatt ggaatttata      1440
     taatctcggc cgagctcaat tcaagtacgt ttgggataaa aattatcccg tttttcggga      1500
     ttgaaactat cccgtwcggg attaaattta gtacgtttgg gatagaatcg agctcgattt      1560
     tcggggttga attaatcccg gcctactcaa taacgataaa ttcaatctat tttggcttgc      1620
     aaaactacgg gattacttca atcttttttg gatcaatttt agcatattcg ggcttaccct      1680
     gttttcaatc ccgtttcgca ttgattcaat cccgtttgac ttgaattttt ttttcagtg       1739
//
ID   EnSpm-N3_RPr repbase;    DNA;    INV; 1498 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   EnSpm DNA seqeunces: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm; EnSpm-N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1498
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3231-3231 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. a few copies.
XX
SQ   Sequence 1498 BP; 485 A; 282 C; 292 G; 438 T; 1 other;
     cacaggccta caaaaaaaaa ttttttttgg tgcctaggat tttagaactg attttagcta        60
     tatttggggc gctgaatcta aatatgaaat tagtttttct ttatcagctc tactttttta       120
     gataagtggt tttttagcgt gcagttctac acaaaatgtg cagttctaac tccattttgt       180
     gctcttataa ttcacattta caaggactgg ttcctagtca atattactgg aatcaatcga       240
     aacaaccgta ggaagtggac ttatcctgat ttagattctg caagacgccc ggtccctccc       300
     cagaggaaat gccgatacca agttccacca gctaccagag ctcgatgtga ggtcgagtat       360
     tgcccctctg atcaaccttc tgatactaat gaagatggca gtgattatga ggaaatgtca       420
     tcaatcaatg atctcaccag agatctcaac tgtcaaaaga agcttctgaa ttactggctt       480
     ccaggttgaa cgacaaaaat ttactggaac aaggaaccaa gatcaccttc caccgtacaa       540
     gagaaaagga tctgctaccc tcttctctaa gaagacaatc ttgtattttg tcacgaaatt       600
     agaggactcc tggaaaaaat ggctcttcct gaatattttc cggatgattg gcgcctactt       660
     attgacagct caaagcgaag ttttaaatgt gtccttctgc ataatgggaa caaatatggt       720
     tcaataccaa ttgctcactc gacgaaaatg aaagaagaat ataaagtata tagaagaaaa       780
     gtgcctcagt tgagtaaaga aaaaattaaa gcaggagtat ttgacggccc acaaataaga       840
     caactcattt aggatccggc cttcgtaaat tcgatgagcg aaaagcctgg actttatttg       900
     ctgcagttgt cggaaattcw ctgggcaaac gcagagctga aaacgtatgt tgagctggta       960
     aacgagatgc ttaatagttt caaatccctt gggtgtaaca tgagcattaa ggtgcactat      1020
     ttacacagcc acttagaccg tttccctgaa aatttaggag acaccagtga ggaataaggt      1080
     gaaagatttc accaggatat taagactatg gaggccgcta ccaaggaaga tgggatacgc      1140
     acatgatggc agattactgc tggtgtttaa aaagggatca taccaatata cattcaagga      1200
     tgtcccggaa aagaagcttc cgaagtgttc agtgattact tggtttcatc gatgactttt      1260
     cctttgtatt aaatattata tattacatta ttaaacaata attaaaattc tgtttttact      1320
     ttttttattt gatccaagga tttaacttaa aatagtgcaa cgtatatttc actaaaatgt      1380
     tatatctcag aaatttgagc tcctaggcaa aaactaatgc catatttgaa ttcagggcat      1440
     caaattcata tgagattagc tgcaaatacc ccggcaccaa aatacctgtt ggcctgtg        1498
//
ID   EnSpm-N4_AAe repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   04-JAN-2019 (Rel. 26.01, Created)
DT   04-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-271
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-271
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 136-136 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 271 BP; 88 A; 42 C; 44 G; 97 T; 0 other;
     cacacttaga ttaaattact ggggtcggta aaattttact gggttttgga actaccgaaa        60
     aagtcagtaa aatgaaaact gtcgccacgc gtaattgaaa agcaaatttc accatgtttt       120
     attttttatc gatatatgat ataaaaagaa agctctctgc aaaatttcag taaaaaatct       180
     ctgtttttcg atttctgaca tttattttta gtttactgac tttttcggta gttccaaaac       240
     ccagttattt ttaccgaaca gattgagtgt g                                      271
//
ID   EnSpm-N4_BTa repbase;    DNA;    INV; 3063 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3063
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 513-513 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 3063 BP; 965 A; 523 C; 559 G; 1015 T; 1 other;
     cactgaaaaa aaagggtttg gatttttgcc ggaatatcgg tgtacaacac caactccgga        60
     tagctgatat ggccccagct agttattttg gatagtaggc aaacccgatt ttggtatcta       120
     cgctgactcg gaagtttagc taatatctaa actagttggg cataaatcta aacctggttt       180
     ggatcgctaa attgaagcat cggcagcaaa ttttggggtt tgtagccagg ggacagttga       240
     aaagagcccc ccaaaatgga ttatttacgg aaataatgtc taaaaccgcg aaaaatatgg       300
     tccacgagac wtttagaggc atatttctcg atatttacgt gcagaatttt tttggcctac       360
     gtcgggatta gaacctggga cctacctaac cgaagacgag gatcctacct actgagccat       420
     gccgagaact taatgatcgg ggacgaaaaa cccgcattta gcttccaatt gctaggacaa       480
     ccaggatatc ttgaccaatt tacaaagctt ttgttcgatt tttattttaa tgcattattt       540
     tacttcattt tattttttca cttcattata ttattttacg tcatttgttt tacttcattt       600
     tgtgtttttg gttgattttc tttagacttc aggtatttta tgtatttact ttatttattt       660
     attgacttta ttttattaat ttactttatt ttatttattt acttaatatt attaatttac       720
     tttattttat gaatttactt tattttattt tttacttcat ggtatttttt tactttattt       780
     attttttttt ttaggtaggt gcttcgtttt attttttttc attcaacagg gatgaaagta       840
     attgttcctc aaattttgtt ataatcagca tttccttact ctctctaaaa taggaaaaaa       900
     tgatgtgaag gtcttaaata aaaaagatta gcttacaagg gggaaagtgg atagaatgcc       960
     tagtcaaatt ctaaacacgc attattccct tattatgcag ttccaaaagg tcataccaga      1020
     aaaaatcttt tgctcagttt caaggtattt tttggtaaat gataacaatc ctggcacgga      1080
     ataagaaccc agtgtatgta gacagcataa aaataatatc actgaaatta ttgattttcg      1140
     ttatgaattc atttaacagg tacttgtaaa tttaaattga atgtaggaca agcatccatc      1200
     aattttttta tcatcaatcg atcaaaaagg tacactaccc acccattaca aatctgatac      1260
     ctaaactcaa atcattaaaa tacaagaaat cagaggataa cagggctctg gcttttcatc      1320
     accacataat tctctggaaa ttaaaatttt ggacatgcta atgatgtagc attaaatgga      1380
     tcggttcttc tccagacttc caatcctcta ctcttgactc ctgaataatg ggcacagaaa      1440
     aacacagctt ataggaagac aaacctggag tcataaccgg ttccatgaaa atgaaacata      1500
     ctattaatat tgcaactgaa aatggggcta gatatgtaaa gttgctagta ggtgtatatg      1560
     tacttaagta cttacgaact tctcctccgt gctaatcatt gttgttcagt tatctgcaaa      1620
     gtaagttctg caggttggaa gtgtgggtac attgaaggat attctgctaa ctgtcaaatt      1680
     atagttccgc aatttaattg cagtaaagag ctagaaacta taatgttgaa ctaagcaggt      1740
     ttgatggatc gatattctag agaagatgga gaaatgagtt gaaataaaat gatttcaggg      1800
     cagccttcga aagaattcct ccagaactaa tctctggttg agtcatatga agtggtaaaa      1860
     ctttgaacct ctttgcctga atttgatttt gatgcgactt ggtaccttcc tacaaaatac      1920
     agtccatttc atggatatat tggatacgca gtgactgtta tgaaaaacca aggcggataa      1980
     agaatgaaaa tatattttga ggttagcttt aatgaaaaat aaacaattgt gttctggcgc      2040
     tgagcggaga tgtaaattga tttctaagtt gttatacgaa gttaaaaata tttcagatga      2100
     gttacctgag aaaaaattgt caccttaaaa tctatgtgcc gctgaaagaa accaaaatat      2160
     tgagctttga tacatacatg aggtcctgat tctaattacg agcgactcat agataggtac      2220
     acactgttac tatcccatgt attaaaacaa taacaccgat atcgagcgat caaatgatga      2280
     tttggataat gctgatgttt cttgatttaa caaactgatg ataagaatca ctgtcagact      2340
     aaagtcctcc ggtttcgatc gcgaattctt gtcacgcagc acgccgctcg aacgaacaga      2400
     ttagttaaac atctacactc ttggacgaag gaatactgcc ttacttgaaa gattaataga      2460
     tcagcaataa tgctttcaga tgtgtttagt ttaatgatta aagaattagt aacataatac      2520
     cttgactcac ccaccgggat ggtgttattg ttatcagttt ctgttgacat caagtcaaca      2580
     gcactgactg actgagagtt aagttctact gcattcagag agcgccactg acgattccga      2640
     gaatgagcgg tgaatttgaa atagcacagc acttgagata atcaattttt attactttta      2700
     attcgttaac cgactcgata cgaccgactc gcgacgccat tagcatttca actgagactg      2760
     aaaaagtaac ggactttttt aaacgcacgt gattcgtcac tgcacctgcc taaacagttt      2820
     gtgacggtat atggccagtt tggattatag ccgaactagt tcagctacta cctagaagtg      2880
     gtttagatac aacataaact tttaggtttg tgatgaatct aaaatggggt ttagatagca      2940
     cataaacttg gttatgctag gagctcaaag gttttgtttc ctacttcaaa cagtttgcct      3000
     attagcctaa tcgccgctga actgaccagt tcggctaaaa tctgaccctt ttttttttca      3060
     gtg                                                                    3063
//
ID   EnSpm-N4_DEl repbase;    DNA;    INV; 2630 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2630
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4019-4019 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs (mostly TA).
XX
SQ   Sequence 2630 BP; 908 A; 425 C; 366 G; 924 T; 7 other;
     cactcataga aaaaatcaag aatttcgatg tcaattcaag aacgaacgat gtcaaaagta        60
     gggtaaattc gaattttttt gattcaagaa cgaaagacta tattcaagaa cgaattatts       120
     aatcccgaat ttctacattt aagaacgaac gtcatcagtc caagtactca aaagtgcttg       180
     aagaaagtgc gaaagatatt ggtttgagaa cgaaaaattc tttattcaag tattaaagtg       240
     tcttagttta aactgtgcaa gtgaacaaat taagtataaa aaacgttcgt ttaagcatga       300
     acagttctta atttaagtac gaatagtttt aatttaagtc agaaaaattc gtagttaaag       360
     aatgatactc ttatattcaa gaacgaagta tttttcatgt aagaaacaaa tattcttatt       420
     tggagagtaa accattcttc ttttaagaac caaaccctct ttaataaaga atgaatattt       480
     ttaatttaag aacaaatcat gttttattca agaaataaat atttatttga agaataaaca       540
     attcttttct taagtataaa acgtttttaa cttaagaata taatttcata atgaaaagta       600
     tttgagtatc tgattcactt cttaatattt taaagtacaa cttttgtatt gtatattttg       660
     acatatataa gaacaatttg tcttaagaag cttatacata tttaatacga acaagagttt       720
     tattattatt tacaggatat aaatgcaaag gagcagtatc gaattcactt aactttctaa       780
     tacaatattc tttagcagag ccaattacgt atgcgcgaaa atgtttatca atgtttgtaa       840
     ttttaattgg ttggcatatc ggccggggcg agaaattaat tttaaataac tcaaaatcac       900
     ttaatattac acctaagtag taattgattt tgtaccgagt tcctttaaaa attaatatat       960
     catacaaatg gaattcgttg cagtccgaaa acttttcctt taacaaatta ttaaattgtt      1020
     gttgatggct tcctcaacta ttgcgctgat cagccagatt ctatccacct saacaagatt      1080
     ccttttatta attaacgttt ttccatgctc cttcgcctct ataatcgaac gaatgctctg      1140
     caacaaaaat aaattgttca ctttatatat amaaaattaa aaaaaaaaat tataatttat      1200
     aaaaaataat taccttgtgg agcacaaaak tggtctcgtt ttcgttttgg cstgcgctga      1260
     ccttggtaat tttctaaata aaatattgcg ttaaaaacta ctctaaaaaa tgtctattat      1320
     taaacttaca tttttttctc tccaaattgt aagcttccgc ttgaatagca tacgcagtcc      1380
     caattggaga actgcttcct ttagctcctc ctctgtcaca ctttctaata gtgacaaagt      1440
     cactccagct tctgtatgaa attaatataa aaacaattaa aatgattttt ctaagaagca      1500
     aataccaata cacgaactaa aaaaaacagc aacaagcagc aaacgtatgc atgtacatgt      1560
     gtgcacgcga atttactcct tcttttttta ctaagaaaaa aaaaagcaac tgtaccgcac      1620
     tgagttccga aaaagaggaa tagaaaacaa aaaggaacgg taaagcgctc gttcacatat      1680
     gtatatacat acatatgtat gtaaatgtgc ccttgtaaaa awttccgtca gcctttttat      1740
     ttatttttta taaactctga tttaacacca attcttattt ttactagttt ttattggaaa      1800
     aagtcgcgat aactggcaca agaatgtttt gcattgttat gtgtgcgtgc gaacgtttta      1860
     ccgttgcttt tttctttcca ttttactttg tctttttcgg aatcaggaaa gaggcacata      1920
     aacacattaa caaaaatgta attcgcgcga aatttaattt tattaacgac tactccgttt      1980
     tgttatatta aagtattagt ttgttttact ttaattcgta agttaactta attcacgcga      2040
     attttaattt tattgacgac atcgcttctc ttttatgtta ccacatttgc taatagttta      2100
     ctgtttcaca ttaatgcaca attacttacc ctgcaggtac ggcagcacac cctgcattcc      2160
     catttcttcc aacgcgtcct ccagcttttt gggcgattct ctttccattt ttttacgctg      2220
     cgactcggat ctcttacttg cgcacttctc gttttaaagt aaggcagctt tkcgatcgac      2280
     tagccgaaaa gaagatatcg accgataaca ctgatgtgta tcgatataca caaatgtgct      2340
     cgaatgtaca aaattaacgt ataatcgtat gactgctagt gaaaaaatgc ttaatttata      2400
     gatttaaatg ctttttttat aattctgtta ttatttatag acattataat cagaattaaa      2460
     gctataaaat atattttctc tgtgtgttaa aaaaaaaaaa ttgtaaatac tattatcaag      2520
     tatgacccgt acttattctg tacacgttcg tcctaaaaat tttaagaatt attcggccga      2580
     ttttcaagaa cgttcgtgct aaaattattc gttctacttt tttctgggtg                 2630
//
ID   EnSpm-N4_DTa repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   25-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-684
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4655-4655 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 684 BP; 236 A; 113 C; 132 G; 202 T; 1 other;
     cacccagaaa aaaaaatgac ctaaaatgtc aaaaaatggc ctagaattta ggtaaaattg        60
     gcctaaaact ggagctaagt ccttgaatgg cctaaaattt aggattgtat gacctaaaat       120
     gttaggccat taatggccta aaatggggta atttttggcc tagattttag gtaatwggct       180
     gccttaaaat atgagaaaac ccctatccaa aattttaggc tttctttggc ctaaaaattt       240
     gtactgaaaa atgtttcata ttataaagta aatacagaga aatttatagc taactcgagg       300
     tcaatgtcgg cttagtcttc aagaagtcgt cattattcca acacacaaaa acgagcgaag       360
     aggcttcact gttcagcagt gaaatcgctg ttttattcaa cgatcgaagt gggttaccat       420
     gcaagccgcg ctataactgg ttgggaatta tagcgtcgct agaacggtat cagagttccg       480
     tgcaaattta tttaggtaaa atgcattaat tttaaggccc acgatgacct aaaatattag       540
     gctatacggg acctaaatag tagggcaaat ataccaaaaa tttaaatttt taggcagtac       600
     atgacctaaa aaggaacttt tagtccattt aaaatgtttt aggctatgca tgacctaaaa       660
     tgttgtccat catttttctg ggtg                                              684
//
ID   EnSpm-N5_AAe repbase;    DNA;    INV; 918 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.01, Created)
DT   17-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-918
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-918
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 137-137 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 918 BP; 298 A; 159 C; 154 G; 306 T; 1 other;
     cactgaacga aatcttccgc catagattga atgatttttg cctcatccga gccccatacc        60
     tattttcaga cacatccaag atgattttca tcttcggtga aatcatctgt ttacaaatcg       120
     cgctgtatga aaatcatcct ttattgagaa tatttttatc ctttgaaaag atgcttgaat       180
     ttgaatgatt ttcatacgtc aatgtaaaca atacaaatta catgtttggt attaataaaa       240
     atatatacga atcgactttg aacaataaca caactttaat agttttatac acatcatatt       300
     ttattgttaa ttacaacctc actaattcac attaatcaaa aaaaaatatt gatctcatct       360
     catgaggcca gtcgcacgca ttggcatctg catgaagcgg ctgctgatgt gactccagaa       420
     ttcgaatkga tggccttggg atgcacgatt tgcggttttt ggtacactag aaaacaagct       480
     tgaaagtaac aaatataatt gatatagaaa taattctgga tttctgcaat tacctgtgaa       540
     atccacgagg caaaacttga acaccacgct gctgccacca tattttatgt aaacattcca       600
     agaataattt gacgtttggg aacgttagtt ttccgtatga tatttcagac gatagttgaa       660
     tgatttttga ttaggggcat ggtagaaaat aaaacccgtc aattattgca tgttattcat       720
     ttgtgttttc tcaattcaac tgtcagcttg ttgtcatacg aaaatagagc aaaagttgtt       780
     tcagaattgg atgatttttg ttcaacagtc ggtggctgca tcatattcct taatagtcat       840
     tcaaaataag gaatatgaat atttacagcc atgtgtatta caaatcattc aatctatggc       900
     gggagatttc gttcagtg                                                     918
//
ID   EnSpm-N5_BTa repbase;    DNA;    INV; 1474 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1474
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 514-514 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1474 BP; 404 A; 270 C; 344 G; 456 T; 0 other;
     cactgttaaa aattattctg gcctgagtgg cctgagtgaa atattatgga gctatcctgc        60
     ctggagcatc gagtgacaaa attttgcggt gagttagata gctcgctctg gcatgggaag       120
     ctccttgtag catgtgtcac tccaggaaag acagctatat gctcgggaga gatactttcc       180
     actcagattt aagatactta agaagaaaca gagctataat tttctgcgca tcatcaacgc       240
     gcattggccg ttacaatctt attctggaat tcacgactgc gacggcgtca gtctccagcc       300
     agtggctttt gcgtgaacag tgattagttg cgactcgtga aggtgtacag caaattaaat       360
     tttgtttgaa ggctttccag gataataccc catggatccc ataccaaagt gttcgctgag       420
     ttcctaacac gacggaaaat aaaaattcgt cctagtagaa tagcctacct ccaggaattt       480
     tgaaaacgcc ggtaagggca gcagttttat gaaactaggt ttaagaggaa aaatacatat       540
     ttcgtaccat tatactgcaa aattgtatct ctttctcttt tatcgcttca ttccttatcg       600
     cttgttgatt tgcatgtgca tggtagttta tttagattat tccctattta aaaccatcat       660
     gttgctcccg ttaatgtatt atttgctttt agttgtactt ccttgtcaag tatctgtagt       720
     ttccttggtg aaggttcgtt atgcgtctgg agatggcact gtatgccgaa aaacctcagg       780
     tgtattgaat aaaattttgc agtataattc tacgaaattg tcatttattc tttttagctc       840
     gtatgatact tttgggcatc aaagcctgat tatatgggta tggcgtggcg tccagtaaag       900
     ttagaattct gttatcgtgt atatttattt tttaagctta cactgaattt atgttcacaa       960
     aatacttaat atctataaaa cttttctttg tctaaaagcg ttttcgaaat tactggagac      1020
     agctgttcag ctatgacaaa tattgatttt ccgtcgcgtg tttgcaactc aaaaaacact      1080
     ttggctccga atttgtggga tattggcccg aaagttcctc aaacatgatt tgatttgcag      1140
     tacaacttca catcttttca aaaaaaaaga acatacattg cagttacagg tggaagggaa      1200
     aggcagaaga gggagggagg agagggaggg gaggagagga gagggagggg aggagagggg      1260
     ggaaacggat cggggtatga gacggatgcc aggggtaagg ggagggcagt cgccagcgac      1320
     gcagcccgtc cttatgcctg agttacttta gctcagcatt tccatactta cgtcggagat      1380
     tttcaactcc gtggaaattg gccctgagcg atgagtgact tccgagcgac ttccttatat      1440
     aggtcgtgct ctgagctaat tttttttaac agtg                                  1474
//
ID   EnSpm-N5_DEl repbase;    DNA;    INV; 799 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-799
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4011-4011 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 799 BP; 294 A; 143 C; 110 G; 251 T; 1 other;
     cacagagaaa attaatcaag tatattgcac tcaatctgag aatattcgta ctcaaaaaaa        60
     atccaagagc aaaaattctc actttgagac cattttactc agtttgagta caaattttca       120
     agaatgaaaa aactcaaaat gagaatctac caaaataaat cggccaaaaa tgtaactaac       180
     attttctttc aactttattg tttgttttac attatgttat attattaatt tacgtgttaa       240
     atgaaatcat tttacttacg aaatattttt atgaaaagca catgcctcga ctgagaattg       300
     aacccgggac ctttcgcctc tagatgtaag ccttaactac tcgcccacgc acgctctaac       360
     ttctcagtaa gctaaagccg cacaactatt ttatttcaaa aggcgaattc gtawtttaag       420
     caaaatattt gcggtatttt ttagaaatga taaagagtta cataaataag cattaataaa       480
     taaaaataaa aacaacgaaa aacaaaaaaa aaaagaatca cacaactcga agtgaactcg       540
     gaacctcaaa accttgggtg ttggcttcct ggtccggaca tctcagaccg ctagaccacg       600
     gattttgagt acattttgcc tcattattag cacatttttt ctcaaattca gaatatatcc       660
     tcagtttaag tattttttct taaaatgagt acaaatattc ttaatgtgag tttttgggca       720
     aaatcagtac tcaaaatgag tatatcctca agttgagaat tcaaattctc aatttctgaa       780
     cgtcagaatt ttctctgtg                                                    799
//
ID   EnSpm-N5_DTa repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   26-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-223
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4656-4656 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 223 BP; 58 A; 23 C; 44 G; 98 T; 0 other;
     cacacaaaaa aatttgcttg gtaaaattga ccaacaaaga tagttacgta actattaaaa        60
     tagttacgtg tattttgttt ttgctttggg tttgtgtctt tgctaattgt gtgtattttg       120
     ttgttgtgaa atgactattt acttagtaga attgacaatt ttgctggttg gggcctgttt       180
     gacaattatt acagttgatt ttaccaagtt ttttttttgt gtg                         223
//
ID   EnSpm-N6_AAe repbase;    DNA;    INV; 921 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 26.01, Created)
DT   30-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-921
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-921
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 138-138 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 921 BP; 299 A; 158 C; 159 G; 305 T; 0 other;
     cactgaacgg aatctcccgc cacaaattga atgatttttg gctcatccga gccccaaacc        60
     tattttcaga cacattcaag atgattttca tctttgtgga aatcatctgt ttacaaatcg       120
     cgctgaatga aaatcatcca atcttaaaat gaatttaggc ttcctagaag atggatgaaa       180
     ttgaatgatt ttcatatgaa catgtaaaca aaccctgcta tgctagttta tcatttagaa       240
     taatttgaat tccaaaaata atgaccaata tttgatggtt ttacgtaaga ttaataagtt       300
     tattctatcg ttagtatcaa aaacatcatc taaaatcgcc tgcaggagca taagtttttg       360
     tgcaacaaac acttcgatag tccaaacaca gctccatgat tcaatccaaa acataagcga       420
     tttgtgcatt atcagcgggt tgtggggtat cagcgaatcg tgtgtcctat aggttgataa       480
     acacatgcta agaaaagata attttgtaca attattacaa acagcatgca cttacctagt       540
     tatattcgct cataaatacc gaccgcacca cgttgctacc accatgtttg tttacagttt       600
     acaaggatga tttgataact tggatcattt ggtatccata tgttatttta gacgaaaatt       660
     gaatgatttt cgatatggga catggaagaa attaaaatcc gtcatagaat agatgttttt       720
     catctgtgtt atcattattc aagaatctac ttattttcat tcgtatgtaa attgaaaatc       780
     atcctagaat tggatgattt ttgttcaatg gtcgttggat gcatcatatg ttctcacatt       840
     cattcagttt gaggaatatg gagatttgca gccaaatgaa ttaggaatca ttcaatttgc       900
     ggcgggagat tccgttcagt g                                                 921
//
ID   EnSpm-N6_BTa repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   03-JUL-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-240
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 943-943 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 240 BP; 53 A; 68 C; 67 G; 52 T; 0 other;
     cactgaaaaa aaaactccgg ccgtgggagc cgcaattacg ggctatatag acataccgtc        60
     cgttccgggc tcagaggccg aaaattccgg ctgctggagc cgtagcttcg gcctctgaac       120
     ccggagcaat cgaagctacg gctccagcag ccggaatttt cggcctttga gcccggaacg       180
     gacggtatgt ctatatagcc cgtaattgcg gctcccacgg ccggagtttt tttttcagtg       240
//
ID   EnSpm-N6_DEl repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-184
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4012-4012 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to consensus.
XX
SQ   Sequence 184 BP; 68 A; 26 C; 31 G; 59 T; 0 other;
     cacagagaaa aacagagctc taaaattcga cgttttaggt gctaaaagag ggtgaaaaca        60
     ttttaaaaag taaagcaaaa cattttagta acactaagta aaataaaatt tgtatgaagc       120
     gttttacttt ttaaaatgtt tcaaccctgt ttgtgcacct aaaacctttg ctggtttttc       180
     tgtg                                                                    184
//
ID   EnSpm-N6_DTa repbase;    DNA;    INV; 912 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   26-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-912
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4657-4657 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 912 BP; 319 A; 140 C; 149 G; 304 T; 0 other;
     cacagagaaa aaaaaccaag aacattgcac tcaaatcaag aacattcgtt cttaaaaacc        60
     gggtaagcac aaatgttctc atttcgagtt gaatgttctc aatatcagaa cgaaatggtg       120
     ttagctaaaa atccgacatt aagttcactt cgttctattt tcaagttgat tttgttctta       180
     attcaagaac atttttaaat caaatggata caaatataag ttcatttgtt ctattttcag       240
     cacttttttc tctcaattct gtagcatttt gagtttgatt ttagctaagg ataagagtaa       300
     tttataagta atattaaaaa ggtagttgtc caattacacc ttataaaggt gcgcgttgca       360
     cttgacttcc agctagtgtg gaagttcatt aaagacttaa gccagaaaaa aagtcttaaa       420
     gtctcagaat ctgaattggg ctcggttcat gaagggctag aaccagttgg gaattacata       480
     taagacgaaa agggcaaatc taatggtaaa gtcgtattgg agcaaagtaa aatggtctaa       540
     tgcgttctag gtgtcaaacg aaaacatcct aacgcgttct aggaaatcca aaaaaattag       600
     agaatagagt tttgaatcat tttaagttga aatgcaactt aatttttgtt ctttctttag       660
     tctttttcgt tctcaaacta agaacatttt cagatattgt ggtttttgag aaccaaatcg       720
     atttgattta agaaccatgt gctaaaataa taacgattcg ttcttatttc aagaacattt       780
     taagctcaac tagattttaa gaaccaattc aacttaattc aagcacattt agaacatttt       840
     aaacttgaaa aaggcctttc tatttttaag aacattttca actcagatga gaacgtcaga       900
     attttctctg tg                                                           912
//
ID   EnSpm-N7_AAe repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 26.01, Created)
DT   02-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-733
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-733
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 139-139 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 2-bp TSDs for most insertion.
XX
SQ   Sequence 733 BP; 262 A; 130 C; 112 G; 229 T; 0 other;
     cactgtaagc tcaaagtacc ctttaaaggg taaaaaagta ccctctttga gagaaactag        60
     tttaactcat aaaaagagta aagggcctgt actcattaaa gagtaaaccg cctgtacgtc       120
     aaatcaacga gtaaaattta ccctttatcc taaaggaatt cgagatggaa aatgggtaaa       180
     atatactcta tttctgttat tttgagatat aatgatttaa aaccaattca tgaaaataaa       240
     caagagaaat aataaacatt tggctatcac atactttatt agaacttaat ttaatctata       300
     aatacaatta tcatgctgat ttgcacattt caccaaggtc aatgtttgaa gcgcttcttg       360
     tagcattggt atgccggttt ttactaaaca attactgcat tccgtgaagg tatttttatg       420
     tagctcattc gttctgcaaa gacaaaatca cttagttcgt aacgtaatag atagtattat       480
     ttacctttaa acttaccaat atttagatgt ttgttccctt ggcattagga gatagaacgg       540
     acaaaataac agcgtccgcc aaaaaccctc aagacattct tcacccatta aagagtaaac       600
     ctccgaaact aataaatgga taaaatgtac cctttatcca aaatttgaaa ctacccctta       660
     ttttgacagc ttcatatatc ggaaaataat gggtattctt tactccttaa agggtaatgc       720
     cgggtttaca gtg                                                          733
//
ID   EnSpm-N7_BTa repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   03-JUL-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-305
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 944-944 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 305 BP; 85 A; 49 C; 59 G; 112 T; 0 other;
     cactgataaa aatatttgtg ttcttgtgtt acttttggtt aatataggaa gtgaaacaca        60
     aaccaacaca aattttgtgt tgattttggt acagtttgcg gtgaatttag cgcagaaaac       120
     aatggagaga ctgggaaaat gcattcctcc gattgcgacg ttggtattca ccactcgttt       180
     tttattaaat ttcttcaaga aaactagctg gcattttctc ttgaaattgt caaccgaagg       240
     ctagggttat tttgtgtttt acttcccgta ttaaccaaac ttttgtgttg aaatttctct       300
     ctgtg                                                                   305
//
ID   EnSpm-N7_DEl repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N7_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-304
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4013-4013 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to consensus.
XX
SQ   Sequence 304 BP; 125 A; 41 C; 32 G; 106 T; 0 other;
     cacccagaga aaacccccat agtaaaatta aacattaaaa tatttgaatg taacattgtt        60
     tttaaaatat aaacttactt aaaataatta tgtaatataa acatatttaa ttggtttatc       120
     caataggaaa attgtagatt tcaatttttt ttaatttaaa actacatttt ttcaatactt       180
     aaaaataaaa atgaaagtgt aacacacttt gatttaaaca caacacccct cgggctaaat       240
     cagtaccgaa aatatttagt tcaaagtgaa aatatttgga tttaccatga tatttctctg       300
     ggtg                                                                    304
//
ID   EnSpm-N7_DTa repbase;    DNA;    INV; 2549 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   26-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2549
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4658-4658 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 2549 BP; 805 A; 466 C; 422 G; 856 T; 0 other;
     cactcataga aattttccgg taaaatcgcc ctaaaaacaa ggaaaatcgc cctaaaacgg        60
     gggtcaatgg cgactaggca acaaaattag ggcaaattgc cctaaaaata cgggtgaatt       120
     tgtcacacat ttagggcgat ttttcgtaga tctagggcga tttttctatt ttcaaagcta       180
     attgccctaa aaataggaaa tgagaccctt acactaaagg cagtttcctt taaatccagg       240
     gcgatttttc tggacttata ggcgaattgc cctggaaatc ggaaaaaata cctttaaact       300
     aaaggcagat tttcataaat ctagggtgtt tttctggatt ttagggcaaa ttgccctaga       360
     aatatgaaaa aatatcctga aactaaaggc agatttttat aaatttaggg cgtttttctg       420
     gatttatagg cgaattgccc taaaaaaagc aaagtgctcc ccaaaatttc ccggcttttt       480
     ttcataaata aaaatacgat ttcattatat tttttttgtt ttttttatat ttttgtttgt       540
     tgttatttac acaatttcta attatataca tttacatact tttctactta ttcttattgc       600
     taaaagaatt acatcgatct taaaaataat gttttggctt aatgtatttt ttggtcctta       660
     ggttttgtgc ttccgccgga gggaatttta ggtcttttaa ggtttattac aataagtact       720
     gattatcaaa ttttacttct aattgaatgc atagaaataa tatttttttt tggaatgaac       780
     agattgtttc tttaaaatag ttacagtttt aaggttttat aatccttcaa gagttcggat       840
     aaagctttac ctttcttatc agactctaaa tgaatttcat aaaacatttt ttggataaat       900
     gtcgtggttt aaaacaaaaa atattttgaa gcacacatca atacttttca ataaggttgg       960
     cattctataa ataaacctct gataggtaaa ctggaaattc accaaggtca aaaagggctt      1020
     gttcccacgt tgcagctgaa tggttgcagt ttcggctttc cggattagca attttccgtc      1080
     aatgccttta gatgtgtttg cagttcccca acagtagcct tccaaaccaa gaaacggctt      1140
     cgcgggtccg caatggtgtg cttcgcgttc ttgctcccgc cgtccttttt tgtcattgct      1200
     gtcgcaccaa cactgaatgg atcgcaagcc aaattaaagt tgattgtatc tctattaaat      1260
     aaaaacagtc tatttattga atgagaaaag aaaaagagaa aaagcacata ccttcagcgt      1320
     ggctttccaa agatttgagc agttttattc ccttactttc gcttttaaaa agtgcgaaaa      1380
     gtggtttgcg gaagctggat ctcaaagacg ttctcaatct aaaacaagaa ataaaattgt      1440
     tagaaattaa tataaaaatg cactactaac agtcagaatt ttcatttagc ctgcgattgc      1500
     gtttgctgct acttctggaa aaaaagaagc aacaaaagca aatttcggtt actgacgaaa      1560
     tgacgcaata gaaatttggg ggttattttg gcatatgcac ttgtgaatgc ggtttgtccg      1620
     gtgcataaat acagatttct ggtaaatata tacatctgta tacatgtgta tattctgttg      1680
     catcattttt ttacctcaag cattatttac atatacacat acatatatgt atactcttat      1740
     taatgttctt actttgttct gccacacttc caaaactcta catctggacc gctgcttcca      1800
     gtcaaatctt tttaagtttc agctgcattt tcctctgtta cagatatgta aattcaatta      1860
     gttattaata tccaaattgc acaattatat atgtatgtac tcaccagaaa acagagaaag      1920
     aatcgcctcc caagtccttt aatagcgttt acatttttca ctttttcaca aacacgtctt      1980
     tcgccgccaa gcgcccgaaa aattatgaca aagtctagac aatgcaactc tttctacccc      2040
     cacccttgcc actgcaacgg acgaaaagta gcaaagaaga agaaaaaggg tggacttctc      2100
     taaagtcaaa tgcgctcagc atcaaaattc atagaaaaag gtccgcccta atatacacac      2160
     acattcactt gttttgacct gtcaaccaca cacacataca cacatgtatt acatatgtat      2220
     ccattaattg cgtcttaaaa tttcgtttga ctcttccttg tttttagggc aatttcagaa      2280
     catttttttt gctattttgt tcaacgtttt aaggcgattt cgccctaaaa ataaggaatt      2340
     acttttggag tcgactcatg aaaattcgcc ctaaaaaaca gggcaaattg gcctttttgg      2400
     aaaaactaac cctaaaaaat attttccatg gcgatttttc gtaactttag ggctagccac      2460
     ccgtataata agaaaatttt tcgtagtttt agggcgacct cggttttagg gcgacttttc      2520
     tagtatttag gtaaaaattt ctatgagtg                                        2549
//
ID   EnSpm-N8_AAe repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 26.01, Created)
DT   03-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-525
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-525
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 140-140 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 525 BP; 169 A; 98 C; 106 G; 152 T; 0 other;
     cacacttaaa aaaaattacg gattacggtg aaatttcacc gtaatctcaa cagctgaagg        60
     ttcggtgaaa aatcaccgaa caatctgtaa aatcgttgaa cacaatcata aagaaaaaca       120
     agaaaatggt tcaaccggga atcgaactcc cgacctgccg atcaggaagc aggcttgcta       180
     ccactaagcc agcttacact gcttgtaagt ggtgtgcaaa aactgaaaca aaaggaagct       240
     catgcctgcc agagcggctg tcacacgatt tcacagaagt tcggtgaaaa taatgctttt       300
     accgaactgt tcgttagtat ttcacagggt tacagtaaaa tggtttgttt cacggatttt       360
     ttccggtaaa atagtagatt tcaccgattt tctccggtaa aatagctgat ttcacggatt       420
     ttgtcggtag aatagtagat ttcacaggaa aatctgtatt tttactgttt acagttcaat       480
     ttcggtgatt tatttcacag gatactgcga tttattttaa gtgtg                       525
//
ID   EnSpm-N8_BTa repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   03-JUL-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-237
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 945-945 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 237 BP; 81 A; 42 C; 36 G; 78 T; 0 other;
     cactgagaaa aaactatggc ttataaacct attagaggta aatatggaac accactaata        60
     gtagtacctc tacatataat aatagcacat ataccttagt tatggtctct gtaccttaat       120
     taggtacaga gaccttagta tggttcacag accgagaatc attagtttat ttacgactat       180
     tataggtgtt ccatatttac cactaatagg tttataaacc atagcttttt ctcagtg          237
//
ID   EnSpm-N8_DEl repbase;    DNA;    INV; 1220 BP.
XX
AC   .
XX
DT   02-JUL-2021 (Rel. 26.08, Created)
DT   02-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N8_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1220
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4014-4014 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 1220 BP; 428 A; 189 C; 173 G; 423 T; 7 other;
     cacagaaaaa aaattgataa gatatgatac tcattccgat gaaattccgt atcattttat        60
     gcgtgataca tgacgtatca gtttgatatc atcgaaatgt aaaaatatac atttcgacaa       120
     tatcaatttt acacaaaaac agtatcaata tatttaacat ttttttkata ttaaaatgtt       180
     gaatcgacsm tgttgtaaat ttcatatttt aatatcaaaa ctttattatt gcatwtttga       240
     tattaaaaaa aaattatatt attgtgtatt tgatattata gttaagaagc aggagcagga       300
     atgttttttt aagaattttt tagcacttgc taaaagtatg tacatttgtt ttagaaataa       360
     cttaaaatat atatgatgcc atacatttat ttataaatac aaattttttc ttatgaaaat       420
     taattttcca aaatgttgtg gttgaatcgt acatatgtat atgcggtttc tgctgatact       480
     taagcttctg gtttaacttc tggaaagaaa atataaagtw aaatggaatt aggtcctgtt       540
     ttctcgtctt gatgattaac taaaagtcga ttttaaactt gaaaccttaa acatttatat       600
     agtgtgtgag tgtctatgct ggcggcaaaa ataatgcata agtgaccata tatttcaaat       660
     gtgcgtgtgt gtstgggtgc tagccgactg gaaaaacgac acacacacat acagtcaaat       720
     ttttgccggc cagcatagac actcacacac acaacacaaa agaattatga aattttawat       780
     gctaaaacaa taacttgttt aactagttag ttacaatcat aacttatcat ccacttatca       840
     cttatttata aagattaaaa atccctactc accttttctt gcgctccact tgtaaaacgc       900
     actaccgatg tcttctcaca taaaagtcaa atcaccgaaa aacaagcaat gcgaaagccg       960
     tgtaagcggg acaacacgtg tagaactcgg gagttcgaat ttcgtaactg tccttctccc      1020
     tctaacttat ttgatttttg tcgccatctt gcaggattct ctctttttcg acttgagaga      1080
     actttcaaag agagagaaat tgaaaaatac cattttccaa catcaaattt acatttttca      1140
     atggttaaaa taaaaatctc ttgtaaatat caaattgaac agtcgttatc aaattgaact      1200
     ttacgattat tttttgtgtg                                                  1220
//
ID   EnSpm-N8_DTa repbase;    DNA;    INV; 1818 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   30-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1818
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4659-4659 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1818 BP; 583 A; 305 C; 281 G; 649 T; 0 other;
     cactcataaa aattaatttc taaattttgg aaatctcgcc attgaatcgg cctacctttg        60
     aaaatagaaa aaaaatttct tgttattaga aaattgtcct ttgaatacag aaaacctttc       120
     ttgatggaaa aaattcaaga aagaattttt cttaaaaata gaaaaatgaa aatctcatat       180
     gtttgttttg ccgtcgcagc caaaacattt ttgtacgtat ttaaggacaa aatcaccttt       240
     gaatatatga atgaaatgac cctagaatat aggaaagtag ccattgactt ccttcggctg       300
     ccgaatgtta acgacaagaa aaacgaagtg ggacgaaggg cctactcggc ccgactacta       360
     cccggctacc gacttctctg atcccccgag cgtcagttgt gaaaaaaatt cgtgagtgat       420
     ggacgtgatt ttcaagcgga taagaggtga agcctttttc cgaatattca aaggtatgta       480
     aatatgtata taattttttg tatagcgggc gtacaattgt atgtatgtaa ttaaaggata       540
     catttcaaat ctctttacca agcgtatacc aatttaggtg aattgttttt tagctaagag       600
     ctacgtacat acatacattt gtacataaat ttgtgggtgt acagttctat aataacttta       660
     tcttattact cgcattttat ttatttttca gagtgaaaat acctgcagtt gcatcagcca       720
     aataatttgt ttgtcgaagc tgtaattttg ttttaaaacc ttctaaggta agaaaaatat       780
     gttgtatttg tttgacatac ttatgtatgc atgtaaatat ctatgcatgt acgcggctca       840
     cccgatctga aacccgattt tcaacccttt catattctgc tcctctctct cgctcgcttg       900
     acctacgcgt cgcgacgttt ctctcttcac cttcttaaaa ctgacacgat ctgccctgct       960
     tacattcggt ctcccttcgc gcaaaggact gtatgtaaat atatatgtat gtatgtacgt      1020
     gtctctcccg tgcctctctc tctctgaaat tcgattttca acccttcatt ttctacctgt      1080
     cttgctcctc tctctcggtc gtctgtccaa cgtgtttgta ttttggctat tattaacatt      1140
     acattatttc aaaaaagttg tttatctaaa aacaaatcat tgatatccca ataactcttt      1200
     ttttatagat gaggaaaggc gaagaaaatg gatcacctta ggtcatatga agttcaacag      1260
     accttgggta ataataatgt tttcttgagt caaaaatgtg ttatttaaaa atgtttaaat      1320
     gttaagtgtt aaatgtttta aatgtaaata aatataatat gcaaaagaaa aaaccaagtt      1380
     acattttatt tttagggttt cagtgttaat ataaaacttc ctttcaagaa atattatttc      1440
     ttaaatcaag aaataaaatt tcttgaaagg aaatttaaac aagaaagaat ttttcttgtt      1500
     taaaaggtgc ctttctaaaa aaccctttct tgttttaaga aatttaattt cttgaaacaa      1560
     gaaacaaacc acctttgaaa caagaatcgc ctttcttgtt ttaagaaata ttttttcttg      1620
     tttttatggt ggctttctaa aaaacccttt cttgttttaa gaaatttaat ttcttaaaac      1680
     aagaaatatt ttttcttgtt ttaatggtgc ctttcaaaaa aaccatttct tgaaacaaag      1740
     gtgaggtcgc ctttggcaaa aattcaagaa agaattttct agattttaag gaaattcttc      1800
     gatttttttt tatgagtg                                                    1818
//
ID   EnSpm-N9_BTa repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   03-JUL-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-266
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 946-946 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 266 BP; 79 A; 57 C; 54 G; 76 T; 0 other;
     cactgaaaaa aaaagttcgg taaatccgaa ctagttagga tcatatggaa ccacgatttt        60
     gttcggtaca cacgaccgaa ttattcggtc tgctcagccg aactgttcgg tccactgaac       120
     cgaactgtaa gaatttatta tggttcggtc gcacaaaccg aacaattcgg ttgaacagac       180
     cgaataattc ggttgtgtgt accgaacaaa acctggttcc atatgatcct aactagttcg       240
     gatttaccga actttttttt tcagtg                                            266
//
ID   EnSpm-N9_DEl repbase;    DNA;    INV; 1797 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.12, Created)
DT   01-JUL-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N9_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1797
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(12), 6585-6585 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1797 BP; 601 A; 310 C; 288 G; 596 T; 2 other;
     caccgagaaa aaaaaaaccg ttctcaacag tctcgatttc agtatttccg tgctcaatag        60
     tgagccaaga acggatttac tgaaatcaag aagacatttt cttagatcaa gactgctttt       120
     ttaagactga atttttcgct tctctttttt ttttatacat ctatattcga aattataaat       180
     ctaaatatat tttaatctta tagttttttt atcattattt aagacataag tatgaaggga       240
     ggtgtgaaaa aattggagag ctcgtccaac aaatttggaa agctgcttac ttgaaggttg       300
     atgttattgt ttttcatttc ctcaataata agattaatga gaatgcctct ttgcttttca       360
     gtcagtattt tacatgctag aagttctttt ccagcagccg ttccacttaa aattgaattc       420
     aagctctatg aaaaatttgt aataattata attaatatta gactcaggtt attggttatc       480
     aattatactg aataaataca taattattac aacttaaaga ctcatacctt gttaagagtg       540
     tatttgaatt taggcgcatt agacggcaac ggagataaaa gtgctggcgg tgccttttgt       600
     ggcgatggct ttggagacga tggttgcgaa gatattcctt gagtaaacta taaaaataaa       660
     caaagaaagt taccaagaaa tttggaaaga gagataataa tgtcttacct ttgttttcct       720
     ccaagcgaac agcttttcgc ggaagagtac tctaattccg attggcggaa tcgcctcctt       780
     aatttcctcc gcggtgataa attccagaca gtcgaaattt acaccggcgc ctagaaaaaa       840
     ataattaaac agtgtaacaa tttttatact caaatttcaa aactaacttg tctaaaaaaa       900
     gattgttaaa aaaatttgaa gcgtggctct gctacaaaaa gtatttattt aaaccgagct       960
     gcgagtcgcg ctgccgcgtt ttcctacgtc ttgcaaatgc tcgcatactt tctcgtttgt      1020
     atgtatktac gcctgttgtg cgagcatttg caagacgwaa aagaataagg atcaaaggaa      1080
     acaaaaaaca aatacataca tggactgcag cagcgtgact tgcagtaaat tgatatttta      1140
     aaactcgtgg taaatcattc gttttactaa agcacgtgtt aaatagtaaa tttaaacatt      1200
     cgaaacacgt ttattttgtt cacaaataaa ttaatacaat cacacttgct taaattaaat      1260
     gaaaattatt atataaaata ttttttctac atatatgtaa ataataatag ttatatactt      1320
     agttttcatt ttataaaata ttaattactt accgtgcaag tatcgctggg cctccaacaa      1380
     atcaaacgag accaataagt cgaacaaccg gtcatctatt gtctccgtct ccatgcttcc      1440
     acttttcaac actcaatcaa tcaaagacaa aactaccccg ttccgcggcc gaaaatttta      1500
     aagggaaatg acgaggcccg aagtatactt cggtaacttt ccgaacaatt tgagagagaa      1560
     cttctctccc aatttttatc tctttcaatt tattttacgt tttagactaa tttcttctcg      1620
     agtttaagat cttttattct cgagttcaag atcttttctt ctcgattagc gaaatcgaga      1680
     acaaaaagaa gattctcctc gatttcaaga acgattcttc tcgataaagt gagaagtaaa      1740
     aatactgaaa tagagaagat ttgctcttgg ttttttcgtt ctcaaatttt ctcggtg         1797
//
ID   EnSpm-N9_DTa repbase;    DNA;    INV; 1505 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   EnSpm/CACTA; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1505
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4660-4660 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 2-bp TSDs.
XX
SQ   Sequence 1505 BP; 491 A; 258 C; 235 G; 521 T; 0 other;
     caccgagaaa aaaaaccgtt ctcaacgttc ttgatttcag tatttccgtg ctcaaaagtg        60
     agccaagaac ggttttacta aaatcaagaa cgagtgttct tgatttgaga ctactttttt       120
     gaaaataagt attcttgatt tcagtatgag tcttcttgga ttcaagaaga aacattcttg       180
     gattcaagca taggcgttct tggtttcaag aataggcgtt cttggttcca agagtaaatc       240
     gttctcgggt ttaataattt ctctcttacc aagaagaacg tattcttggt ttcaagaaga       300
     caaattcttg gattcaagca taggcgttct tgatttcaag aataggcgtt ctcgatttca       360
     agaatgttcc actcttgatg caaaaaggaa tttttcagaa aaattaaaaa tttcatatat       420
     tcactttttt ttattttatt aattttttat ttattattat agatataaca taattacaaa       480
     ttacttataa ctaaacatat ttaagtctaa cagcaatctt atcattatta agtaagtacg       540
     aataaattta agtaacatac ataaaacgta caataaatat aaagttttat aattttaaaa       600
     tgtaccttgc caagcgtgct acctcctcta ggtggatcga taccaatcag cgatgtttgt       660
     ttctcgctct tttcctgatt acgtcccaca aactgcaaga tttatatata gtttaaataa       720
     caataaataa tacaaattgt atattattta tatatataca tactttcgag ttttgcgaac       780
     agcttctccc ggaacacaat acgtaaacca attggcggaa tcgcctcatt gatctctcct       840
     tgtccatgaa gacactccag cgcctaaaaa tagttaaagt attatttcat attacttttt       900
     taaaacagaa ccttacaagc gcaagcacgc tcctgcataa acacacatat gtatacatac       960
     atagatgcat ttagcgtggc gtcacttttt ttcacaaaca tacaagttcg aagtatttat      1020
     ttattatata gcttattttc attattttta ttattacact aatgttatta ttaaatactt      1080
     acgtttgagg aaggggagcg cactcaaaat atctagttcc tctagaaggt tctttaaacg      1140
     tgtgtcgtcc gcgtgtgtac tccgcttcac tggccgaaaa aaaacgagca tttgacgaga      1200
     gccgaagtga acttcggtag cttgccgaaa aattccagag agaatgtctc tctcattttt      1260
     tatctctctc attttttttc atctctgaga cgaagttgag aacgatttta agaatgcttg      1320
     gggacgattt caataacgtt catgcttgat aaacgaaatc gagaatgatg tattctcaaa      1380
     aagccagatc aagaatggtt ttattcttga tttcaagaac gtttgtgcta aaaaaagtga      1440
     gaagacaaaa tactgaaatc aagaatattc gttcttgatt ttttcgttct caagttttct      1500
     cagtg                                                                  1505
//
ID   EVSAT1      repbase;    DNA;    INV; 106 BP.
XX
AC   M31306;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   E.vuilleti satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; EVSAT1;
KW   Satellite repetitive element.
XX
OS   Eupelmus vuilleti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Eupelmidae; Eupelminae; Eupelmus.
XX
RN   [1]
RP   1-106
RA   Bigot B.Y., Hamelin H.M. and Periquet G.;
RT   "Heterochromatin condensation and evolution of unique
RT   satellite-DNA families in two parasitic wasp species: Diadromus
RT   pulchellus and Eupelmus vuilleti (Hymenoptera).";
RL   Mol. Biol. Evol 7(4), 351-364 (1990).
XX
DR   GenBank; M31306; Positions       1     106.
XX
SQ   Sequence 106 BP; 33 A; 28 C; 24 G; 21 T; 0 other;
     accgattgaa atttcataaa atgcccgaaa atccctgtag acgatgtcca ggtgtcagga        60
     tgacccccag gtcgacgtaa caccatctac gaggaatgca ccaggt                      106
//
ID   FAMAR1      repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   01-NOV-2005 (Rel. 10.09, Last updated, Version 2)
XX
DE   Forficula auricularia Famar1 mariner transposable element - a
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; FAMAR1.
XX
NM   FAMAR1.
XX
OS   Forficula auricularia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dermaptera; Forficulina;
OC   Forficuloidea; Forficulidae; Forficula.
XX
RN   [1]
RP   1-1299
RA   Lampe D.J., Witherspoon D.J., Soto-Adames F.N.
RA   and Robertson H.M.;
RT   "Recent horizontal transfer of mellifera subfamily mariner
RT   transposons into insect lineages representing four different
RT   orders shows that selection acts only during horizontal
RT   transfer.";
RL   Mol Biol Evol 20(4), 554-562 (2003).
XX
DR   [1] (Consensus)
XX
CC   The sequence is 95% identical to MARINER_AM, possibly due to
CC   horizontal transfer. Other species sharing highly similar
CC   mariners are Ceratitis capitata (Med fly) and a blister beetle
CC   Epicauta funebris (pestifera). They are not represented in
CC   Repbase.
XX
FH   Key           Location/Qualifiers
FT   CDS           190..1215
FT                 /product="FAMAR1_1p"
FT                 /translation="MENQKEHFRHILLFYFRKGKNASQAHKKLCAVYGDEA
FT                 LKERQCQNWFAKFRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTRE
FT                 IAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKETHLTQRINICDLLKKR
FT                 NENDPFLKRLITGDEKWVVYNNIKRKRSWSRPGEPAQTTSKAGIHQKKVLL
FT                 SVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRAELTNRKGVV
FT                 FHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLN
FT                 GKNFNNDDDVKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQYITE"
XX
SQ   Sequence 1299 BP; 436 A; 226 C; 248 G; 389 T; 0 other;
     atatataagg ttggcaacta agtacttgcg gatttcactc atagatggct tcagttgaat        60
     ttttaggttt gctggcgtag tccaaatgta aaacacattt tgttatttga tagttggcaa       120
     ttcagctgtc aatcagtaaa aaaagttttt tgatcggttt cttagttttc gtttggcgtt       180
     cgttgaaaaa tggaaaatca aaaggaacat tttcgtcata ttttgctttt ttatttccgc       240
     aaagggaaaa acgcatcgca agctcacaaa aagttatgtg ctgtttatgg cgacgaagcc       300
     ttaaaagaac ggcagtgtca aaattggttt gccaaatttc gttctggtga tttttcactc       360
     aaagatgaaa aacgctctgg tcgtccagtt gaagttgatg acgacctaat caaagcaata       420
     atcgattcgg atcgtcacag tacaacacgt gagattgcag agaagcttca tgtatcacat       480
     acatgcattg aaaatcactt aaaacaactt ggctatgttc aaaaactcga tacatgggtt       540
     cctcacgaac tgaaagaaac gcatttaacg caacgcatta acatctgcga tttgctaaag       600
     aaacgtaatg aaaatgatcc atttttaaaa cgactgataa ctggcgatga aaaatgggtt       660
     gtttacaaca atatcaagcg gaaaagatcg tggagcaggc caggtgaacc agctcaaaca       720
     acatcaaaag ctggtattca tcaaaagaag gttttgttat cagtttggtg ggattacaaa       780
     ggaattgtct actttgaact cttaccaccc aaccgaacga tcaattctgt tgtctacatt       840
     gaacaactaa cgaaattaaa caatgcagtt gaagaaaagc gggccgaatt gacaaatcga       900
     aaaggtgttg tattccatca tgacaatgca aggccacaca catctttggt cactcggcaa       960
     aaattattgg agcttggttg ggatgttttg ccacatccac catatagtcc tgaccttgca      1020
     ccatctgatt actttttatt tcgatcttta caaaactcct tgaatggtaa aaatttcaat      1080
     aatgatgatg atgtcaaatc gtacctgatt cagttttttg ctaataaaaa ccagaagttt      1140
     tatgaacgtg ggattatgat gctgcctgaa agatggcaaa aggtcattga tcaaaatggg      1200
     caatacatta cagaataaag ttatttagtt ccatgaaaaa attgtttgat tttctaaaaa      1260
     aatccgcaat tatttagttg ccagcccaat ataatatat                             1299
//
ID   FB4_DM      repbase;    DNA;    INV; 2551 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   24-FEB-2022 (Rel. 27.02, Last updated, Version 6)
XX
DE   Transposable element FB4 (foldback element) from Drosophila.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   Repetitive sequence; transposon; unidentified reading frame;
KW   DMFB4; FB4_DM.
XX
NM   FB4_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2551
RA   Potter S.S.;
RT   "DNA sequence of a foldback transposable element in Drosophila.";
RL   Nature 297(5863), 201-204 (1982).
XX
RN   [2]
RP   1-2551
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   [2]: relaced by consensus, the inserted Mariner in the original
CC   FB4_DM is removed. FB4_DM belong to MuDR family (9-bp TSDs).
XX
SQ   Sequence 2551 BP; 933 A; 337 C; 449 G; 831 T; 1 other;
     agctcaaaga agctggggtc ggaaaaatcg aatttttgaa atttgaaagc tggaatcgtt        60
     tgcccatttt ttgcccatgt ttgcccacca attagttttt tttgcccacg tccagttttt       120
     gagatatgaa ttttcgaaaa agttcgaaaa ttttcgaaaa tcaaaaattt cgcttttttc       180
     aaaatttttt tttttaaatc gcaataacat cgtttgccca cgtttgccca ccctttagaa       240
     ttttgaaaaa atttatactt tagaaaatat aaggctttta agtttacctc ggtctaatca       300
     gagagtaaat cgtttgccca tctcttaaaa ccaaatatta tcaacaaaaa aggtttgccc       360
     aaccattatt attagttttt atcgtttgcc caccctttaa aaaaccttta acaaaaattt       420
     tttttcgatt gcccacattt aaaatacaac caatttcctt agcccacctc tttaaaataa       480
     aaatttccaa taaaaaacgt ttgcccacca tttaaaacta aataatttcg tttgcccatc       540
     cttcaaaatt catttttaac gtttgcccac cctttaaaaa taaattattt cgtttgccca       600
     ccctttaaaa tttgtttttt tcgtttgccc actcttaaaa ctaaataatt tcgattgccc       660
     accttttaaa actaaataat ttcgtttgcc catcctttaa aaataaatta tttcgtttgc       720
     ccacccttta aaatttgttt tttcgtttgc ccactcttaa aactaggtaa tttcgattgc       780
     ccacctctta aaactaaata atttcgtttg cccatcctaa ttttaaaaat aaataaattc       840
     tgttgcccac cctttaaaac tgcactttcc aagttttgga tctgcctaca taaccagaaa       900
     cactgtgttt ctggatatat aggccaaaaa ttggttccat gatatggtaa tttacattcc       960
     aaaggatggg maaacgaaat aatttatttt taaaaggtgg gcaatcgaaa ttatttagtt      1020
     ttaagagtgg gcaaacgaaa aaaacaaatt ttaaagggtg ggcaaacgaa ataatttatt      1080
     tttaaagggt gggcaaacgt taaaaatgaa ttttaaagga tgggcaaacg aaattattta      1140
     gttttaaaag gtgggcaatc gaaattattt agttttaaga gtgggcaaac gaaaaaaaca      1200
     aattttaaag ggtgggcaaa cgaaataatt tatttttaaa gggtgggcaa acgttaaaaa      1260
     tgaattttaa aggatgggca aacgaaatta tttagtttta aaaggtgggc aatcgaaatt      1320
     atttagtttt aagagtgggc aaacgaaaaa aacaaatttt aaagggtggg caaacgaaat      1380
     aatttatttt taaagggtgg gcaaacgtta aaaatgaatt ttaaaggatg ggcaaacgaa      1440
     attatttagt tttaaaaggt gggcaatcga aattatttag ttttaagagt gggcaaacga      1500
     aaaaaacaaa ttttaaaggg tgggcaaacg aaataattta tttttaaagg gtgggcaaac      1560
     gttaaaaatg aattttaaag gatgggcaaa cgaaattatt tagttttaaa aggtgggcaa      1620
     tcgaaattat ttagttttaa gagtgggcaa acgaaaaaaa caaattttaa agggtgggca      1680
     aacgaaataa tttattttta aagggtgggc aaacgttaaa aatgaatttt aaaggatggg      1740
     caaacgaaat tatttagttt taaaaggtgg gcaatcgaaa ttatttagtt ttaagagtgg      1800
     gcaaacgaaa aaaacaaatt ttaaagggtg ggcaaacgaa ataatttatt tttaaaggat      1860
     gggcaaacga aattatttag ttttaaaagg tgggcaatcg aaattattta gttttaagag      1920
     tgggcaaacg aaaaaaacaa attttaaagg gtgggcaaac gaaataattt atttttaaag      1980
     ggtgggcaaa cgttaaaaat gaattttgaa ggatgggcaa acgaaattat ttagttttaa      2040
     atggtgggca aacgtttttt attggaaatt tttattttaa agaggtgggc taaggaaatt      2100
     ggttgtattt taaatgtggg caatcgaaaa aaaatttttg ttaaaggttt tttaaagggt      2160
     gggcaaacga taaaaactaa taataatggt tgggcaaacc ttttttgttg ataatatttg      2220
     gttttaagag atgggcaaac gatttactct ctgattagac cgaggtaaac ttaaaagcct      2280
     tatattttct aaagtataaa ttttttcaaa attctaaagg gtgggcaaac gtgggcaaac      2340
     gatgttattg cgatttaaaa aaaaaaattt tgaaaaaagc gaaatttttg attttcgaaa      2400
     attttcgaac tttttcgaaa attcatatct caaaaactgg acgtgggcaa aaaaaactaa      2460
     ttggtgggca aacatgggca aaaaatgggc aaacgattcc agctttcaaa tttcaaaaat      2520
     tcgatttttc cgaccccagc ttctttgagc t                                     2551
//
ID   FEILAI-1B_AAe repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   24-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   A SINE family from Aedes aegypti.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; FEILAI-1B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-289
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1445-1445 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. This family is ~86% identical to
CC   FEILAI_AA.
XX
SQ   Sequence 289 BP; 86 A; 64 C; 79 G; 60 T; 0 other;
     ggggcccaga tagccgtagc ggtaaacgcg cagctattca gcaagaccaa gctgagggtc        60
     gtgggttcga atcccaccgg tcgaggatct tttcgggttg gaaattttct cgacttccca       120
     gggcatagag tatcttcgta cctgccacac gatatacgca tgcaaaaatg gtcattggca       180
     tagtaagctc tcagttaata actgtggaag tgctcataag aacactaagc tgagaagcag       240
     gctctgtccc agtggggacg taacgccaga aaagaagaaa gaagaagaa                   289
//
ID   FEILAI-1C_AAe repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 26.01, Created)
DT   10-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A SINE family from Aedes aegypti.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; FEILAI-1C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-287
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-287
RA   Bao W.;
RT   "SINEs from the yellow fever mosquito.";
RL   Repbase Reports 21(1), 522-522 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 287 BP; 88 A; 62 C; 75 G; 62 T; 0 other;
     ggggcccaga tagccgtagc ggtaaacgcg cagctattca gcatgaccat gctgagggtc        60
     gtgggttcga atcccgctgg tcgaggatct tttcgtaaag gaaattttct cgattcccag       120
     ggcatagagt atcttcgtac ctgccacacg atatacacat gcaaaaatgg tcaatcggca       180
     aagaaagctc tcagttaata actgtggaag tgctcataag aacactaatc tgagaagcag       240
     gctttgtccc agttgggacg taacgccaga aagaagaaga agaagaa                     287
//
ID   FEILAI_AA   repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   29-OCT-2001 (Rel. 6.09, Created)
DT   24-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Feilai family of SINE - a consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; FEILAI_AA.
XX
NM   FEILAI_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Tu Z.;
RT   "Genomic and evolutionary analysis of Feilai, a diverse family of
RT   highly reiterated SINEs in the yellow fever mosquito, Aedes
RT   aegypti.";
RL   Mol. Biol. Evol 16(6), 760-772 (1999).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 289 BP; 80 A; 62 C; 76 G; 68 T; 3 other;
     ctggggcctt ccttagccga gtggttarag tccgcggcta caaagcaaag ccatgctgaa        60
     ggtgtctggg ttcgattccc ggtcggtcca ggatcttttc gtaatggaaa ttttcttgac       120
     ttcccngggc atagagtatc atcgtacctg ccacacgata tacgaatgcg aaaatggcaa       180
     ttttggcara gaaagctctc agttaataac tgtggaagtg ctcataagaa cactaagctg       240
     agaagcaggc tctgtcccag tggggacgta atgccaagaa gaagaagaa                   289
//
ID   FEILAI_B    repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A tRNA-derived SINE family from Aedes aegypti.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; FEILAI_B.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-284
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 284 BP; 80 A; 63 C; 75 G; 66 T; 0 other;
     ggggccttcc ttagccgagt ggttagagtc cgcggctaca aagcaaagcc atgctgaagg        60
     tgtctgggtt cgattcccgg tcggtccagg atcttttcgt aatggaaatt tccttgactt       120
     ccctgggcat agagtatcat cgtacctgcc acacgatata cgaatgcgaa aatggcaact       180
     ttggcaaaga aagctctcag ttaataactg tggaagtgct cataagaaca ctaagctgag       240
     aagcaggctc tgtcccagtg aggacgtaat gccaagaaga agaa                        284
//
ID   FR1         repbase;    DNA;    INV; 189 BP.
XX
AC   X78688;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   FR1 repeated sequence.
XX
KW   FR1; Repetitive element.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-189
RA   Lu J.Y., Kochert D.G., Isenhour J.D. and Adang J.M.;
RT   "Molecular characterization of a strain-specific repeated DNA in
RT   the fall armyworm Spodoptera frugiperda (Lepidoptera,
RT   Noctuidae).";
RL   Unpublished.
XX
RN   [2]
RP   1-189
RA   Adang J.M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (07-APR-1994). M.J. Adang,
RL   University of Georgia, Dept of Entomology, Athens, GA 30602,
RL   GREECE.
XX
DR   GenBank; X78688; Positions       1     189.
XX
SQ   Sequence 189 BP; 54 A; 34 C; 36 G; 65 T; 0 other;
     gaattcgtgt aaaacgtact ttctttgttt ttctatgaga gaagacattg gttgaccttt        60
     ttacaccggt cacaacgaat attcgtgatt gcacttccac tacaatctgt ttcacggatg       120
     agttgaagga aatatcggat aagcattctt tgtcggaaat cataatataa aacgtgctct       180
     tctatgtcg                                                               189
//
ID   FROGGER_I   repbase;    DNA;    INV; 2077 BP.
XX
AC   AF492763;
XX
DT   11-MAR-2006 (Rel. 11.02, Created)
DT   13-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   Drosophila melanogaster transposon frogger (internal portion).
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; FROGGER_LTR; internal portion; FROGGER_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2077
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler D.A. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol 3(12), 84-84 (2002).
XX
DR   EMBL/GenBank/DDBJ; AF492763; Positions     204    2280.
XX
FH   Key           Location/Qualifiers
FT   CDS           794..2038
FT                 /product="FROGGER_I_1p"
FT                 /translation="MLLAVAAEKDLHMHQIDISNAYLNSDLEEDVYLKQPK
FT                 NYVDKENPGKVLKLQKAIYGLKQSERLWNDALNEVLQNMGFKRSKNEACLY
FT                 YKKQQNGFSYIAVYVDDLIIISPKESDIEDIKGSIATKFDMKDGGQLRYFL
FT                 GMEISRKGQTGPIKLCQKRYIENLLRRYGMQSCRLVGTPFDPGYESGCTNE
FT                 KCAKVNLTHFQSLIGSLMYLAVVSRPDILHSVSKLSQRNTDPHHEDEAAAK
FT                 HVLRYLCGTINLSIIYMKTGELVKEFADADWANDKVDRKSYSGYAFLMAGS
FT                 AFSWGSSKQSVIAQSSTEAEYIALSTAAKEAVFLRRLLQEMGWFDKGPLKL
FT                 LCDNLSASSIAKNPINHKRTKHIDVRYHFIRDKVNKNEIIVEYVNTQNNVA
FT                 DILTKAKALWLFEITWICLNL"
XX
SQ   Sequence 2077 BP; 722 A; 396 C; 470 G; 489 T; 0 other;
     tttggttatg ggcccaggcc ctacgcgtaa agaaatgtat tgattcgttt acaaagtatt        60
     cgtgaagtga tcaaagtgaa gtaaccaaaa ataaaacaaa gttaagagaa aagaactcgc       120
     gtctatcttt gtttaagcca atgcgggata aagagacagt taagtgtctc gtatacccct       180
     cagcaacacg gaattgctga acgtgcaaac cgcacaattg tggaaatggc caaaagtctt       240
     ttaatacatg ctggtttgga tgaattttta tgggctgaaa cgtcacttgc tagctgaagc       300
     cagcagtact gacgatgaag aagccgttta cgacagcgat gagggcagga cgtttgtcag       360
     tgccaatgac gactctgatg accaatctgc agatgacacc ctaatggcac aacagcgaag       420
     gccaggccga ccaaagttca tacgaactgg ccaaccagga aggccgaaaa aggtgtatca       480
     aactcttcaa tatttgaatt acgaggaaga tgaagaaaca ccgcagtcgt tggagcaagc       540
     actcaagggc caattgtaaa ttggcaggat tcaatgcgag cgaagtatga agcgttaata       600
     gccaacaata catggtcact ggtagacctg cccaaaagca attggatcaa aatgggtatt       660
     tcgcatcaag aaagacaagg atggcgaaat agagagattc aaatcacgac ttgttgccaa       720
     aggttgtgga caacaatttg gagtgaacta ctgggaaaca tattccccgg taatcaggta       780
     cgagaccatc aggatgctgc ttgcagttgc tgcagaaaaa gaccttcaca tgcatcaaat       840
     tgatatatca aacgcatacc taaacagcga ccttgaggag gatgtttatt tgaaacaacc       900
     aaaaaattac gttgacaagg aaaatcctgg aaaagtcctt aagttgcaaa aagcaatcta       960
     tgggcttaag cagtctgaac gactgtggaa cgatgcctta aatgaagttc ttcaaaatat      1020
     gggctttaaa agaagcaaga acgaggcatg tttatactac aagaagcaac aaaacggttt      1080
     tagctatata gctgtctacg ttgacgattt gatcatcata tctcccaaag aaagcgacat      1140
     agaagacatc aaagggagca tagcaacaaa gtttgatatg aaggatggcg gccaactgag      1200
     atatttcctt gggatggaaa taagccgaaa gggacaaaca ggtcctataa agctatgtca      1260
     aaagcgctac attgaaaatc tactaagacg gtatggcatg caaagctgtc gactagtggg      1320
     aaccccattt gaccctggtt atgaatctgg ttgcacaaat gagaaatgtg caaaggtaaa      1380
     tttaacccat tttcaatcac taattggttc gcttatgtat ttagcagtag taagtcgacc      1440
     agacatattg cactctgtca gcaagttatc acagagaaat acagatcctc accacgaaga      1500
     cgaagcagca gcaaagcatg tgctacgata tttgtgtggg acaatcaacc tgagcattat      1560
     ctacatgaag accggcgagc tggtcaagga attcgcagac gcagattggg caaacgacaa      1620
     agtcgaccga aagtcgtatt caggatatgc attccttatg gctggaagtg cattttcatg      1680
     gggctcatca aagcagagcg tcatcgccca aagcagcacc gaggctgaat acatcgcctt      1740
     atcaacagca gcaaaagaag cagtgttttt aagaagactc ttacaagaga tgggatggtt      1800
     cgacaagggg ccattgaaac tactatgcga caatctgagc gcctcgagta ttgccaagaa      1860
     tccaattaat cacaagcgta caaaacacat tgatgtcaga tatcatttta taagggacaa      1920
     agttaacaaa aatgaaataa ttgttgaata tgttaacact cagaataatg tcgcagatat      1980
     actaaccaaa gcaaaagcat tgtggctttt tgaaatcact tggatttgtt taaatttgta      2040
     attgcaaaac agatgatgtt gatcttaagc aaaagtg                               2077
//
ID   FROGGER_LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   11-MAR-2006 (Rel. 11.02, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Drosophila melanogaster transposon frogger (LTR).
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; FROGGER_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-205
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler D.A. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol 3(12), 84-84 (2002).
XX
RN   [2]
RP   1-205
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-AUG-2018).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 205 BP; 59 A; 48 C; 32 G; 66 T; 0 other;
     tgttggaaat ataagattgc atatcatctg tctggcaact ttattactct ctcagagagc        60
     aagcttctct tgctctcatt tgccactcaa agtagtgaag catgtatacg aagttatgta       120
     cacagttcag ttctaataaa gcattcaccc taatcacatc tcattgtctc aatcatttta       180
     ccgcggcggc actcttatgc aaaca                                             205
//
ID   FTZ_DM      repbase;    DNA;    INV; 72 BP.
XX
AC   X00854;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster inverted repeat in ftz gene.
XX
KW   DMFTZ; FTZ_DM; Inverted repeat; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-72
RA   Laughon A. and Scott P.M.;
RT   "Sequence of a Drosophila segmentation gene: Protein structure
RT   homology with DNA-binding proteins.";
RL   Nature 310, 25-31 (1984).
XX
RN   [2]
RP   1-72
RA   Scott P.M. and Weiner J.A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila.";
RL   Proc. Natl. Acad. Sci. U.S.A 81(13), 4115-4119 (1984).
XX
DR   GenBank; X00854; Positions     901     972.
XX
SQ   Sequence 72 BP; 16 A; 20 C; 17 G; 19 T; 0 other;
     agggctctct gattttgcta tatatgcagg atctgccgca ggaccagctc attcgcaaac        60
     tcaccagcgt tg                                                            72
//
ID   FUSHI_DM    repbase;    DNA;    INV; 157 BP.
XX
AC   X68047;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.melanogaster fushi tarazu gene upstream region imperfect
DE   repeat.
XX
KW   DMFUSHI; FUSHI_DM; Repetitive sequence; imperfect repeat.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-157
RA   Maier D.;
RT   "FUSHI_DM.";
RL   Direct Submission to Genbank (13-AUG-1992)D. Maier, Dept of Cell
RL   Biology, University of Basel, Klingelbergstr 70, CH-4056 Basel,
RL   SWITZERLAND.
XX
RN   [2]
RP   1-157
RA   Maier D., Sperlich D. and Powell R.J.;
RT   "Conservation and change of the developmentally crucial fushi
RT   tarazu gene in Drosophila.";
RL   Unpublished.
XX
DR   GenBank; X68047; Positions     513     669.
XX
SQ   Sequence 157 BP; 43 A; 33 C; 35 G; 46 T; 0 other;
     tgcccactgt tggcaggtgc tgcattggcc catttctaat aggcttttga agtttcaaat        60
     attaatcgtc tgcaggcagc aggatcacca atcgataggc caataaaaac aataccctgt       120
     gtcatctgtg tatacaaggc aagtgcggta ttttgat                                157
//
ID   FW          repbase;    DNA;    INV; 4692 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 5)
XX
DE   FW LINE-like retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   LINE retrotransposon; DMFW; FW_DM; FW.
XX
NM   FW_DM; FW.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1152-4671
RA   Di Nocera P.P. and Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A 84(16), 5843-5847 (1987).
XX
RN   [2]
RP   1-4692
RA   Kapitonov V.V. and Jurka J.;
RT   "FW_DM.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   [2] (Consensus)
XX
CC   ORF1 (position 178-1866) encodes RNA-binding protein similar to
CC   the ones encoded by many other LINEs in insects. Endonuclease and
CC   reverse transcriptase are encoded by ORF2 (position 1866-4547).
CC   FW generates ~10 bp-long duplications of target sites upon its
CC   integration in the genome and it generates additional ~10
CC   nucleotides between the 3'-copy of a target site and 5'-terminus
CC   of the retrotransposon [2].
XX
FH   Key           Location/Qualifiers
FT   CDS           178..1863
FT                 /product="FW_1p"
FT                 /translation="MSQNDTRAQRQREHDERRLSIQRNNAYFSYVSPTIPN
FT                 ADIERSITHSPGNLLLPTNQERARSCSPALLAPTEAPLPPTTTAGEGPAAR
FT                 SASSSAAPAHGLTKSAKAKPLAINGTAALPAKQNENVNKKAGSTWQTGMDR
FT                 YITIKRKLSPENSDLGNKPKNTRDNSTLIKNVAPANTNRFALLVDTAEDVP
FT                 LGSVDIEPKKTKPPPIYIREKSTSRLVNTLIGLIGKDSFHIIPLVRGTINE
FT                 IKLQTKTEDDYRKVTNYFTAQKIGFYTYQLKSSKGLQVVLKGIESDVTPEE
FT                 ITEALKEKGFYAKNVFNIKNRNRQPQPLFKIELEPENKPPRKNEVHPIYKL
FT                 QLLLHRRITVEEPHKRNAPVQCTNCQEYGHTRSYCTLRPVCVVCGDLHDSK
FT                 QCQINKENACEKKCNNCGGNHTANYRGCPIYKELKIRLHKRMNTARAHQGS
FT                 ATLIPSETNPEVIFSKAASFAPWPTFNTNKTTFANVLKSGMTPPTQNSRTP
FT                 HEVHTKLDTQQNYHPAAQQETKTEAMMQALQQSMMEFMTFMKTTIQDMMRN
FT                 QNLLIQMLVAQQSNK"
FT   CDS           1866..4544
FT                 /product="FW_2p"
FT                 /translation="MATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSE
FT                 THLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHL
FT                 QATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYN
FT                 AKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLI
FT                 DFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSSKTN
FT                 WLRYKKYISSHIELSPKLNTESDIESCTCALQSILTAAALTATPKITNNTI
FT                 NSKKTNVQIEQLVHVKRRLRREWQSSRSPTAKQKLKVATRKLANALKQEED
FT                 DDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIRNSSGGWARSDEDR
FT                 ANTFAAHLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDN
FT                 LSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKII
FT                 MIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHLIYHNIIPAHQF
FT                 GFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFK
FT                 IKTSLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLY
FT                 LIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIEKWLSD
FT                 WRIKVNEQKCKHVTFTLNRQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTW
FT                 RRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQL
FT                 WGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITEL
FT                 KEKYHSKLHTHPNHLARGLIQLSSRSRLRRKDLPTQRINY"
XX
SQ   Sequence 4692 BP; 1608 A; 1241 C; 857 G; 986 T; 0 other;
     ttcgatcgcc gacgtgtgaa gacgttttta tcgtgctccg cacaaaatcg gttgttttga        60
     gtgaagtgaa cgccaaataa aataaactaa ataaaaaatc tgaaagcgaa agagacgctc       120
     tatgcgatgc aagatcgctt aaatacatag tgaattgtta tcttaaataa taaaactatg       180
     agtcagaatg acactcgcgc ccagcgtcag cgcgagcatg acgaacgccg actctcaatt       240
     cagcgcaaca acgcgtactt ctcctacgtc tcaccgacaa tcccaaacgc agacatcgag       300
     cggtcaataa cccatagccc aggaaacctt cttctaccaa caaatcaaga aagagcgcgc       360
     tcctgctctc ccgctctatt ggctccgaca gaagccccgc tacctccaac aacaacagct       420
     ggagagggac cggcagcccg ctctgcctcg tcatcggctg cacccgctca cggtctgact       480
     aagtcagcga aagcaaaacc gctagcaata aacggtactg ctgcactgcc agcaaaacaa       540
     aacgaaaacg taaacaaaaa agctgggtcg acctggcaga ctggaatgga ccgctacatt       600
     acaataaagc gaaagctcag cccggaaaat tcagatttgg gaaacaagcc gaaaaataca       660
     cgcgacaact ctaccttgat caaaaatgta gcccctgcaa ataccaacag atttgccttg       720
     ctggtagata ccgctgagga cgtgccgctg ggatccgttg atatcgaacc gaagaaaaca       780
     aagcctccgc caatatacat ccgcgagaag agcacaagcc gtcttgtaaa tactttgatt       840
     ggccttattg ggaaagatag ctttcatata attcccctcg taagaggtac tatcaacgaa       900
     atcaaacttc agacgaaaac ggaggacgac tacagaaaag tcacaaacta ttttaccgca       960
     caaaaaatag gcttctacac ctaccagctt aaaagcagca agggcctgca agtagtcctg      1020
     aagggcattg agtctgatgt tacgcccgaa gagataactg aggcgctaaa ggaaaaggga      1080
     ttttacgcca aaaacgtgtt caatatcaaa aacagaaaca ggcagcccca accactcttc      1140
     aagattgagc ttgaaccaga aaacaagcct cctagaaaaa acgaggttca cccaatttac      1200
     aaactccagc tccttttgca ccgtaggatc acggtagaag agccgcacaa acgcaacgct      1260
     cctgtacaat gtacaaactg ccaagagtat ggccacacga ggtcatattg tacacttcgc      1320
     ccggtgtgcg tagtctgtgg agatctccac gactccaaac agtgtcaaat taacaaagaa      1380
     aatgcatgcg agaaaaaatg caataactgc gggggcaatc acacagcaaa ctacagaggc      1440
     tgtccaatct acaaagagct gaaaatccgt cttcacaaaa gaatgaacac ggcgcgggca      1500
     caccaaggat cagctaccct gataccatca gagacaaatc ctgaagtaat tttctcgaaa      1560
     gcagctagtt tcgctccctg gcctacattc aacactaaca agacaacatt tgctaacgtt      1620
     ttaaaatcag gtatgacgcc tccaacccaa aactcccgaa ctccacatga agtgcacaca      1680
     aaattagaca cacaacaaaa ctatcaccca gctgcgcagc aggaaacaaa aactgaagct      1740
     atgatgcaag ccttacaaca gagcatgatg gaatttatga catttatgaa gaccaccatt      1800
     caagacatga tgcgtaatca aaaccttttg atacaaatgc ttgtagccca acaatcaaat      1860
     aaataatggc taccttacgc atagctacgt ggaacgccaa tggcgtttca cagcgcaaac      1920
     ttgagctagc tcaattccta catgagaagc atatcgacgt aatgcttctt tcggaaactc      1980
     atctcacaag caaatacaat tttcaaataa gagactacca tttctacggt acaaatcatc      2040
     ccgacggaaa agcacacggt ggcaccgcca tactcataag gaaccgtatg aagcaccact      2100
     tttacaaaga atttgcggaa aatcatcttc aggccacatc tatcaacatt cagctggatg      2160
     acaacactct ccttacacta gcggccgtat actgcccccc ccgtttcaca gtattagaag      2220
     ctcaattcct ggatttcttc caagcactag ggccacactt cattgcagca ggcgactaca      2280
     acgctaaaca tactcactgg ggatcgcgac ttgtgaaccc aaaaggaaaa cagctttata      2340
     agacgataat aaaagccact aataaacttg accatgtttc ccccgggagt cctacatact      2400
     ggccatcaga cctcaataag ctgccagacc tgatcgactt cgcagttacg aaaaatattt      2460
     cccgcagttt ggttaaagct gaatgtctgc cggatctctc atctgatcac tcgcctgtac      2520
     taattcacct ccgccgatac gcagaaaacg tgaaaccacc aaccagattg acctctagca      2580
     aaacaaactg gctcaggtat aaaaaatata taagttcaca tattgagcta agcccaaaac      2640
     tcaatactga atctgatata gagagctgca cgtgtgcatt gcaatccatc cttactgcag      2700
     cagctcttac tgcaacaccc aaaataacaa ataatacaat taattcaaaa aagaccaacg      2760
     tacaaatcga gcaactcgtc cacgtaaaac gtcgcttacg cagagaatgg caatcttcca      2820
     gatccccaac tgcaaaacaa aagctaaaag tagccacacg gaaactggcc aacgctctga      2880
     aacaagaaga ggacgacgat cagcgccgat acatagagca actcacacca acaggcacaa      2940
     aacaaaagtc actgtggcga gcccactcaa ctcttcgccc accgactgaa accgttttgc      3000
     cgataaggaa ttcatcaggt ggctgggccc gtagtgatga agacagagcc aacacatttg      3060
     ccgctcacct acaaaatgtg ttcacgccaa accaggctac tagcacattc gcgctaccgt      3120
     cctatcccgt aaaccgccat cagcaacaca ccccaattgt gtttcgtcct aaagaaataa      3180
     ctaaaataat caaagacaat ctcagcccga aaaaatcccc cggctacgac cttataacac      3240
     cggaaatgat catccagctg ccacattctg cagttcgcta cataaccaag ctctttaatg      3300
     ccatcaccaa acttggttac tttccacaac gatggaagat gatgaagatc ataatgattc      3360
     caaagcctgg taagaaccac acagtcgctt catcttacag accaataagt ctactctcat      3420
     gcatttcgaa actattcgaa aaatgcctgc tgatccgact taatcaacat ctgatatacc      3480
     acaatataat cccagcccac caatttggat ttcgcgaaag ccacggaacc attgaacagg      3540
     tgaatcgtat tacaacggaa ataagaactg catttgaata tcgcgaatac tgtacagcag      3600
     tatttttaga cgtatcccaa gcattcgaca aagtctggct cgacggccta atgtttaaaa      3660
     ttaaaacatc cctacccgaa agcacacaca aacttctaaa gtcttacctc tatgacagaa      3720
     agtttgcagt gcggtgcaac actgccactt ccactgttca tacaattgag gctggagtcc      3780
     cccaaggcag cgttcttggg ccaaccttat acctcatcta tacagccgac atccctacaa      3840
     atagtcgctt aacggtatcc acatttgccg acgatacagc tatccttagc cgttcaaggt      3900
     cccctatcca agctacagca cagttggcac tgtacctcat cgacattgag aagtggctct      3960
     ctgactggcg aataaaagta aacgagcaaa aatgcaagca cgtgacgttt acgctaaaca      4020
     gacaagactg tcctccgctc ttgttgaaca gcataccact cccgaaagca gacgaggtaa      4080
     cgtacctagg agtacaccta gacagaagac tcacatggcg caggcacatt gaagccaaaa      4140
     aaacccaact taaactcaaa gccaacaact tacactggct catcaactct ggttctccgc      4200
     tcagcctaga tcacaaggtc ttgctctaca attctatatt gaaaccaatc tggacctatg      4260
     gctcacagtt atggggcaat gccagcaaca gcaatattga catcattcag cgagcacaat      4320
     caaagattct gagaaccatc actggggcac cgtggtacgt tcggagtgaa aacatccaaa      4380
     gagacttaaa tatcccatca gttaccaacg caatcacgga acttaaggaa aaataccata      4440
     gcaagcttca cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt      4500
     cccgtctccg gcgaaaggac ctaccaaccc agcgaataaa ttattagggc cgtttaaaca      4560
     tagaacagtt ggaaaaataa tacaactgtt caaaaaatac ttgttatagt taagattttt      4620
     aaacttattg ttagttctta tacaagaaga ttcaataaat aaaagcaaag taaaataaaa      4680
     aaaaaaaaaa aa                                                          4692
//
ID   FW2_DM      repbase;    DNA;    INV; 3961 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   FW2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; FW2_DM;
KW   JOCKEY clade; ORF1; ORF2; endonuclease; reverse transcriptase.
XX
NM   FW2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3961
RA   Kapitonov V.V. and Jurka J.;
RT   "FW2_DM, a family of Jockey-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 5-5 (2002).
XX
DR   [1] (Consensus)
XX
CC   FW2_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   FW2_DM is a separate family. Members of this family are ~95%
CC   identical to the FW2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. FW2_DM is 68%
CC   identical to FW. The sequence is incomplete, a ~500-bp 5'
CC   terminal
CC   portion of FW2_DM is not reconstructed yet.
CC   There are 10 copies of FW2_DM present in the sequenced portion of
CC   the D. melanogaster genome.
CC   The FW2_DM consensus sequence includes two open reading frames
CC   that
CC   encode the 417-aa FW2_DM-ORF1p (positions 2-1249) and 859-aa
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are similar to
CC   the Jockey-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase proteins, respectively.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1249
FT                 /product="FW2_DM-ORF1p"
FT                 /note="DNA/RNA-binding protein"
FT                 /translation="STTQTAIDRYIQIKRKLSPQNYSMGNKSKINCDITRQ
FT                 KTNMPNNDNRFAILADLDDLPNSDKDIKKTPKPPPIYIREKSSSALVNKKM
FT                 DLIEKDSFHIIPLTKGNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPK
FT                 SSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKKPQPLFKV
FT                 ELEPDSWALKKNESHPIYKLQYLLHRRISVEEPHKRKGPVQCANCQEYGHT
FT                 KTYCTLRTVCVACGELHSSVNCPSNKADPGMKKCSNCGGNHTANYRGCPVY
FT                 KDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSG
FT                 LASTNPTTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRT
FT                 TMENLMRNQDLLIQMLVSQQSK"
FT   CDS           1256..3832
FT                 /product="FW2_DM-ORF2p"
FT                 /note="endonuclease/reverse transcriptase"
FT                 /translation="MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSE
FT                 THLTNKYKFQINGYIFYGTNHPDGKAHGGTGVLIRNRIKHTFRNDFGTNYL
FT                 QATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNA
FT                 KHTHWGSRLVTAKGKLLYKTIIKVSNKLSCASPGTPTYWPTDPRKIPDLID
FT                 FAVTRNISHNHINAESLPDLSSLAGLINYLQYADLKNSPCRVTSNRTNWLK
FT                 YKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKRRLRREWQSYRSP
FT                 FAKQGLNNATHTIRKEVINEQECAQRPYIAQLSPFSTKYPLWGLHPSVSPP
FT                 VESVVPIRNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVS
FT                 QTTQNTIEFRPTEIAKIIKELKPNKSPGSDLINPKMIIELPFCAVQTICQL
FT                 FNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSYRPVSLLPCMSKLFEKC
FT                 LLTFIIPYLRTFNKIPEHQFGFQEKHGTIEXVNRITTEIRTAFEKREYCTA
FT                 IFLDVAQAFDRVWLDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTS
FT                 EDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQLTISTFADDTAILSRSKCP
FT                 RQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTV
FT                 IPKSNEVTYLGIHLDRRLTWRRHIEAKRTHLKLKANSLHWLLSIRSPLRLE
FT                 YKVLLYNSVLKPTWTYGSQLWGNASNSSVEIIQRAQSKILRTITGAPWYVR
FT                 SDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARDLTRLSSRTRLRRN
FT                 DMPTQR"
XX
SQ   Sequence 3961 BP; 1386 A; 941 C; 701 G; 932 T; 1 other;
     atcgaccaca cagactgcta tagatcgata catacaaata aagcgaaaac taagcccgca        60
     aaattattca atgggtaata aatcaaaaat aaattgtgac ataacaagac agaaaactaa       120
     catgcccaac aatgataacc gatttgccat tttggccgat ttagacgatc tgccaaattc       180
     tgacaaagac attaagaaga cccctaagcc gcctccaatc tacatcagag aaaaaagttc       240
     cagcgccctc gtaaacaaaa aaatggacct tattgagaaa gacagtttcc acataattcc       300
     cctgaccaag ggcaacattc atgaaacaaa agtgcaagtc aaaacggaag taaacttcag       360
     agcgcttacc aaatacctca acgatgccaa gaaaaacttt tatacgtacc agccaaaaag       420
     cagcaaggga ctacaaagta gtattaaagg ccttaggcct gaaataaccc ctgaggaaat       480
     atcaggagcc caaatagaac aaggttttaa gccgaaatca gttatcaaca tatttaacaa       540
     agataaaaag ccacaacctc ttttcaaggt cgaacttgaa ccagactctt gggcattgaa       600
     gaaaaacgag agtcacccca tttacaagct gcaatatctc ttacaccgta gaatctctgt       660
     tgaagagccg cataagcgca aaggacctgt acagtgtgca aattgccaag aatatggtca       720
     tacaaaaact tattgtaccc ttcgcactgt atgtgtagct tgtggtgagc ttcacagctc       780
     tgttaactgc ccatcaaaca aagctgaccc cggtatgaaa aagtgtagta actgcggagg       840
     taaccacaca gcaaactaca gaggttgccc tgtatataag gatctaaaaa atcggctaca       900
     ccaaaaagtg actatgatgc gtgggcaaag cacgccgagc acaattatac cctcaaaaca       960
     tacacctgat gtccacttaa acagtctgac caacaggaac gtaacatttg caagtgcgct      1020
     taaatcaggt cttgcatcta caaatcctac aactccattc ccactcgctg aacaaaacaa      1080
     ggtaaatgct gatcagccaa caggacagcc acaaggcaat attgaaacaa tgatctttaa      1140
     cttgcaacaa agcatgaccg aattcatgac atttatgaga acaaccatgg aaaatcttat      1200
     gcgtaatcag gatctattga tacagatgct ggtatcgcag cagtcaaaat aatcaatggc      1260
     tcccttacgt ataactctat ggaatgccaa cggcgtttcg cgacacaagc ttgaaatggc      1320
     tcaatttctc caagacaaac atatcgatgt aatgctcctt tctgaaacac atcttacaaa      1380
     caagtacaag tttcaaataa atggttatat attctacggc accaaccacc ctgatggtaa      1440
     agcacatgga ggcactggag tcctgattag aaaccgcata aaacatactt tccgcaacga      1500
     ctttgggaca aactacttac aggcaacatc tttaaatata cagctgggta acggacaaat      1560
     aacacttgct gctgtatact ggccacctcg ctttacgata tccgaaaacc aatttttgga      1620
     ttttttcaac acactagggg atcgcttcat agctgctggt gactacaatg ctaagcatac      1680
     gcactgggga tctcgtcttg taaccgctaa gggaaaacta ttgtacaaaa caattattaa      1740
     agtaagcaac aagcttagtt gcgcctcccc gggcacacct acatattggc caacggaccc      1800
     cagaaagata ccagacttga ttgactttgc tgttacaaga aacatctctc ataatcatat      1860
     aaacgccgaa tctctcccag acctatcttc tctggccggg ctcattaatt atcttcaata      1920
     tgcggatctg aaaaattcac cctgtcgagt gacatccaat agaactaact ggctaaaata      1980
     caagaaattc gtaagttcgc acattcaatg cctgaaccca agaaaaaaac aaactgtaca      2040
     gtatatgcaa cgtaagccaa atgttcaaat tgagcagctt gtcttgaaaa agcgccgcct      2100
     acgacgagaa tggcaatctt atagatcgcc atttgcaaaa caagggctca ataacgcaac      2160
     tcatacaata agaaaggagg taatcaacga gcaggaatgc gcacaacgcc cctacatagc      2220
     gcaattatca ccctttagca caaaataccc attatgggga ctacacccct ctgtaagccc      2280
     accggtagaa tctgttgtgc caataagaaa ttctgcaggt gaatgggtcc gcagcgataa      2340
     acatagagct tctactttcg ctgagcacct tcaaaacgta tttcaaccaa agccggcaac      2400
     gaataatttc gtattacaag agcaaacagt tgtaagccaa acgacacaga atacaataga      2460
     atttcgacca actgaaattg ctaaaatcat taaggaatta aagcctaata agagccccgg      2520
     cagcgatcta ataaacccta agatgatcat cgaacttcca ttttgtgccg tccaaactat      2580
     ttgccagctc ttcaatgcaa taaatagaat tggccacttc ccttcgttat ggaaaaagtc      2640
     gatcatcatt atgataccga aaccgggaaa ggatcataca gttccatcat catacagacc      2700
     tgtaagttta ctaccatgta tgtcaaaact cttcgaaaaa tgtctgctga cctttattat      2760
     accctatctg cgaactttta acaaaatacc ggagcatcaa ttcggttttc aggagaaaca      2820
     tggaacaatc gaasaagtca atcgaatcac aactgaaatt cgaactgcat tcgaaaagag      2880
     agagtactgc actgccattt ttctcgacgt ggcacaagca tttgacagag tctggttaga      2940
     tggcctaatg cataaaatta tgtcaacact ccctgaatgc acccataagc ttttaaagtc      3000
     gtacctgcac aatagagtgt tctcagttag atgcggcact gttacgtctg aggaccacat      3060
     catagaagct ggggttcctc aaggcagcgt acttggccca acactatatc tactatatac      3120
     agccgatata ccaacatcga ggcagctaac aatatctaca tttgccgatg acactgcaat      3180
     cctgagccgc tctaaatgtc cacggcaagc tactgcacaa cttgctctct acctggcaca      3240
     tattgagaaa tggctttctg actggcgaat aaaagtcaat gaacagaaat gtaaacacgt      3300
     aacttttacc ctcaacagac aagattgccc ttcgctcata ctaaataaca ctgttattcc      3360
     aaaatcaaat gaagttacgt atctaggtat tcatcttgac agacgactca cttggcgtag      3420
     acacatcgag gcaaaaagaa cacacctcaa actaaaagcc aatagtctac attggcttct      3480
     tagtatacgc tctcccctaa gactagaata taaggtctta ctctacaact ccgtcctaaa      3540
     accgacctgg acctatggct cccagctatg ggggaacgcc agtaacagca gcgtagaaat      3600
     catccaacga gcccaatcga aaatcctgag aaccatcacc ggcgcaccgt ggtacgttcg      3660
     aagtgataac ttacataggg atttattcat acttccggtc agagatgaaa tagccaaaca      3720
     aatggaaaaa tatcgcaaca aactacgtgc ccatccgaac aggcttgcga gagacttaac      3780
     acggctatct agccgaaccc gacttcgtcg taatgatatg ccaacccaac gataattatt      3840
     agggccacac aaactcatat cagttgcaat agtaactgtt agttaagtac tttttaagat      3900
     ttgtaaactt attgttagtc tcataatgag aagcttcaat aaacaaacca acgcataaaa      3960
     a                                                                      3961
//
ID   FW3_DM      repbase;    DNA;    INV; 3132 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   FW3_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; endonuclease; ORF2; JOCKEY clade; FW3_DM.
XX
NM   FW3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3132
RA   Kapitonov V.V. and Jurka J.;
RT   "FW3_DM, a family of Jockey-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 6-6 (2002).
XX
DR   [1] (Consensus)
XX
CC   FW3_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   FW3_DM is a separate family. Members of this family are ~93%
CC   identical to the FW3_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. The identity
CC   of FW3_DM with members of other families is less than 70%.
CC   The sequence is incomplete, a ~500-bp 3' terminal
CC   portion of FW3_DM is not reconstructed yet.
CC   ORF1 and ORF2 are corrupted by mutations that are difficult to
CC   correct because of insufficient sequence data.
CC   There are ~10 copies of FW3_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(187..660,701..1039,1106..1318,1322..1507,
FT                 1561..3129)
FT                 /product="FW3_DM_1p"
FT                 /translation="QWPSSRSKEYRPEVTPSEITQAFNDKDFKVKTVFNIL
FT                 NKDRKPQPLFKVELEPDTKAIRKKDVHPIYKLKFLLHRRITVEEHVEHTSA
FT                 KGQSNAGTVKNMSKQEDTAHCVQFVSSVESFMTLLIARQIKSAEAVAVTTQ
FT                 QTIEAVQYTKTSKAGFTPETKELSEINPDVFFSTAKRSSFGPGITSQNVTF
FT                 ANVLKWGLTKPSTTTTTLHTAQIDPTPNPRLPTQQQSNIETMMHTLQQHMI
FT                 EFMSFMRTTMQDLMRNQNLLMEMLISQRSKIAQFHHDNQIGVMLLSETHLT
FT                 AKYNFQISGFLFYGTNHPDEKAHGGTGILIRNRIKHHHYSLQLFTCRPHLT
FT                 YYKEAAILPSQRYTFPHVILYPQQFLDFFNSLGDHVIAAGDYNAKHTNWGS
FT                 CSSPLKETVVFDRFCNHQKHPSKPDHSPVLLILNALQCPETTKQTSRLTSK
FT                 RTNWIKYRNYISSHIALNPRLNSDADIESATNTLESVLAAAARISTPKIGS
FT                 APRSRSMARLVIERLVLQKRRMRREWQVHRSQFAKQRLINASRKLSNALWQ
FT                 EEKNAQRRYIEQLSTSSSKISLWKAHPSLTTPAETISPIRTIAGGWARSDK
FT                 ERATTFATHLQHVFQPNPATSSFVLPTLTDDNQTPHEPIEFRANEISKIIK
FT                 DQLYPKKSPGCDLTTPKIIIELPYCAICTISQLFNAITNLGYFPERWKKSI
FT                 IGMIPRAGKDLSVSSSYRPISLLSRLSKLFEKCLMTRITPYLMTRNLIPAH
FT                 QFGFRKKHGTIEQVNRITSEIRTAFEKRECTGIFLDVSQAFDKVWLDGLMF
FT                 NIKAMLPQNTHKLLKSYLYNRAFAVRCNSDMSNDHAINAGVLGPTLYVLYR
FT                 SDIPTSRLLTTSTFADDTAILSRSKCPLQATTQLSRHLLAVERWLSDWRIK
FT                 INEQKCKQVTFTLNRQDCPSITS"
XX
SQ   Sequence 3132 BP; 1051 A; 803 C; 557 G; 720 T; 1 other;
     agagaaaatc tcgaatactt ttgtaaacga aataattgaa cttgttcgaa aatacaactt        60
     ccgcataata ccccaaaaaa gggacagcat ccacgaaact aaggtccaag taaagaccga       120
     agagagcttt aggacgctta caaaatacac tacaaaaatc tactacacct atcaactgaa       180
     aagtagcaat ggccttcaag tcgttctaaa gaatatagac ctgaagtaac accttctgag       240
     ataacgcagg catttaatga taaggatttt aaagtaaaaa ccgtcttcaa cattctgaac       300
     aaagatagaa aaccacaacc actcttcaaa gttgagctgg aacctgacac taaagccatc       360
     cggaaaaaag atgtgcaccc aatctacaag ctaaagtttc ttttgcatcg tagaattacc       420
     gtagaagaac acgtagaaca cactagcgca aagggtcagt ccaatgcagg aactgtcaag       480
     aatatgtcca aacaagagga tactgcacat tgcgtccagt ttgtgtcatc tgtggagagc       540
     ttcatgactc tgctcattgc acgacaaata aaaagtgcgg aagctgtggc ggtaaccacr       600
     cagcaaacta tagaggctgt ccaatataca aagacctcaa aagccggctt cacccccgag       660
     taacgcctgt acgcctccat cacgcacaca atgcacttaa accaaagaac tctcagaaat       720
     aaacccagac gtatttttct caaccgcaaa gagatcctca tttggcccgg ggatcacctc       780
     acaaaatgtg actttcgcaa acgtcctgaa atggggactt actaaaccta gcactacgac       840
     aaccactcta catactgccc aaattgatcc gacaccgaat cctcgattac cgacgcaaca       900
     acaaagcaat atcgaaacca tgatgcatac tttgcagcag catatgattg aattcatgtc       960
     cttcatgcgg actaccatgc aagacctcat gcgtaaccaa aatctcctca tggagatgct      1020
     aatatcacaa cgttccaaat aatcaatggt tgccctacga atatcattgt agaacgccaa      1080
     cggcgtttca cggctttaac tttaaatagc tcaatttcat catgacaatc aaattggcgt      1140
     catgctactg tcggaaacac atctcactgc taaatataac ttccaaataa gcggcttttt      1200
     gttttacgga acaaatcatc cagacgaaaa agcacatggc ggaaccggta tcctgattag      1260
     aaatcgcatc aaacaccacc attatagttt gcagctattt acatgcaggc cacatctata      1320
     aacgtactac aaggaagcgg caatattacc ctcgcagcgg tatactttcc cccacgttat      1380
     attgtatccg caacaatttc tggacttctt caactcgcta ggggatcatg tcattgctgc      1440
     aggtgactac aacgccaaac acaccaactg gggatcttgc tcgtcacccc taaaggaaac      1500
     agttgtataa cgccatcata aatgtacata ctggcctacc gacccgaaca aaattcctga      1560
     tttgatcgat tttgcaatca ccaaaaacat ccctcgaaac ctgaccactc gccagtcctc      1620
     ttaatactga acgccctcca atgtcctgag actacaaagc agactagcag attaacatca      1680
     aaaagaacaa actggatcaa gtacagaaac tatataagct cacatatcgc gctgaatcca      1740
     aggcttaact ctgacgccga tattgaatcc gcaacaaata ctctcgagag tgtcttagct      1800
     gcagctgccc gcatctctac accaaaaatt gggagtgcac ctcgtagccg ctcgatggca      1860
     aggcttgtca tcgagcggct cgttcttcaa aaacgacgga tgcgacggga gtggcaagtc      1920
     catagatcgc aattcgcaaa gcaaagacta ataaatgctt cacgtaaact ctccaatgca      1980
     ctctggcaag aagagaaaaa cgcccaacgt cgctatatag aacaactatc aacatccagc      2040
     agtaaaatct cactatggaa agcccatccc agtttaacta ccccggcaga aactatttca      2100
     cctataagaa ccatcgcagg tggatgggcc cgaagcgata aagagagagc taccacattc      2160
     gcaacgcacc ttcaacatgt gttccagccg aaccctgcta caagttcgtt tgtattaccg      2220
     acgctaacag acgacaacca aacaccacat gagccaatcg aatttcgagc caacgaaata      2280
     tcaaaaatta taaaggatca actatatccg aaaaagtccc caggatgtga tctaacaact      2340
     ccaaagatta ttattgagct tccatactgt gctatatgca ctatctccca gctctttaac      2400
     gctatcacaa acctcgggta ctttccagag agatggaaaa agtcgatcat aggaatgata      2460
     ccgagggcag gaaaggacct ctcagtttcc tcatcataca ggcctataag cctattgtct      2520
     cgtctttcga aactcttcga aaaatgtctg atgacccgga tcacccccta tctgatgaca      2580
     cgtaacctta ttccagcgca tcagttcggc tttcgaaaga aacatggaac cattgaacaa      2640
     gtcaatcgaa taacatcaga aatacgaact gctttcgaaa aacgcgaatg cacaggaata      2700
     tttctggatg tctcccaggc atttgacaag gtctggctag acggtttaat gtttaacatc      2760
     aaagcaatgc ttccccaaaa cacccacaaa ctcttgaagt cgtatctcta caacagagcc      2820
     tttgctgtga ggtgtaactc tgatatgtcc aatgaccacg ctataaacgc tggagtactt      2880
     ggacctacgc tatacgtcct ttatagatca gatataccca caagcagact gttaacgact      2940
     tctacatttg ccgacgacac agcgatttta agtcgatcca aatgtcctct acaagcaaca      3000
     actcaactct ctcgtcactt attggctgtg gagaggtggc tatctgattg gcgaatcaaa      3060
     ataaacgaac aaaaatgtaa gcaagtaaca ttcacactca accggcaaga ctgcccttcg      3120
     atcacatctg aa                                                          3132
//
ID   G2_DM       repbase;    DNA;    INV; 3102 BP.
XX
AC   AC006215;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   20-OCT-2011 (Rel. 16.10, Last updated, Version 2)
XX
DE   G2_DM is a non_LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF2;
KW   FW_DM; DOC; JOCKEY superfamily; G; DMCR1A; G2_DM.
XX
NM   G2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3102
RA   Kapitonov V.V. and Jurka J.;
RT   "G2_DM.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   GenBank; AC006215; Positions   18012   21113.
XX
CC   G2_DM belongs to the JOCKEY group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   G2_DM forms separate family of recently or currently active
CC   retrotransposons in Drosophila melanogaster
CC   since there are several G2_DM copies having less than 5%
CC   divergence to each other. G2_DM is close to the G_DM element
CC   (25% divergence both on nucleotide and protein levels).
CC   (DMCR1A in ';KW' is an old name for G2_DM, and has no relation to
CC   the current DMCR1A sequence).
XX
FH   Key           Location/Qualifiers
FT   CDS           264..2957
FT                 /product="G2_DM_1p"
FT                 /translation="MQSLKIVIWNANGLQRSRAEVEHLLKTDAIDVLLVSE
FT                 THFCPRSHFSISGYDVIPANHPSGRARGGAAMLIRSGIQYTELPAFQEEWA
FT                 QCALARISSLHGDITVGAVYFPPRHSITETHLQDFFESFGPRFIAAGDFNA
FT                 KHSWWGSRSINPKGRTLHRFLQSRRLDCHSSGEPTHWPSNPSLLPDLLDFA
FT                 ISKGIGQDRLTCSNYNKLISDHSAIKMLLNIPVLKKELPRRLTGKHTDASK
FT                 FTLWMLSSLHPDPPLSTPSNIDAAIKTLTDEMYNAAEFANPPPSTSPRTPG
FT                 RDLHLWSPEIAAFVAEKRRLRRIWFFSRNPRDKAALNRAIKELKDKLCTLR
FT                 QDSFDRFLEELEPGDPQHNLWQVTRHIRRPAKKASPVRKADGSWCRSEAER
FT                 AEAFADLQNAFTPFDRCTGEERAATTRFLESPCPPSLPIEPVTPEEVAQEI
FT                 ASLKASKSPGLDRIDATSLKMLPPPCSQLLANIYNRCFSLGYFPRSWKRAE
FT                 VILILKPGKPEANLASYRPISLLTILSKILERVFLRRVMPVLDEAGLIPDH
FT                 QFGFRRSHGTPEQCHRLVARILDAFENKRYCSAVFLDVKQAFDRVWHPGLL
FT                 YKLKSHLPSSHYALLKSYTEGREFQVRCGSSTSTTRPIRAGVPQGSVLGPI
FT                 LYTLFTADLPIIPSRYLTAATYADDTAFLATATNPQLASAIIQRQLDALDP
FT                 WLKRWNIMINADKSSHTTFSLRRGECPPVSLDGDTIPTSSTPKYLGLTLDR
FT                 RLTWGPHINNKRIQANIRLKQLHWLIGKKSKLREKLKILVYKTILKPIWTY
FT                 GIQLWGTACTSHRRKIQRFQNRCLRIVSNAHPYHENSAIHEELGIPWVDDE
FT                 IYRHSVRYASRLENHHNHLAVNLLDHSQSLRRLQRTHPLDLTQHT"
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 other;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
ID   G3_DM       repbase;    DNA;    INV; 3987 BP.
XX
AC   .
XX
DT   27-JUL-2000 (Rel. 5.06, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   G3_DM is a non_LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; ORF2; AP endonuclease; RNase H;
KW   DNA binding protein; JOCKEY clade; G3_DM.
XX
NM   G3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3987
RA   Kapitonov V.V. and Jurka J.;
RT   "G3_DM.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
RN   [2]
RP   1-3987
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   G3_DM belongs to the JOCKEY group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   G3_DM forms separate family of retrotransposons that were
CC   recently
CC   active in the Drosophila melanogaster genome.
CC   There are about 10 copies of G3_DM in the genome, they are ~5%
CC   divergent from the consensus sequence and ~10% divergent from
CC   each other. A G3_DM portion, which encodes reverse transcriptase,
CC   shares ~62% nucleotide identity with other JOCKEY-like LINEs.
CC   ORF1 encodes a DNA binding protein:
CC   ORF2 encodes endonuclease and reverse transcriptase domains:.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..1197
FT                 /product="G3_DM_1p"
FT                 /translation="MDLPLLAMITTLLCLLKRTCTNPTKDDEIKSDTPSSE
FT                 KPPPIFISDVNDINGWLRYLNLHMDSTEFTYKSQRDGQTRIMVKNVEEFRE
FT                 LVKKLNTDQVKYHTFQLKQVRAFRVLAKNIHHSTDIESIKKSIEMQGHVVR
FT                 GIHNIKSRITKEPLRMFFIDLEPHNNNSEIYNVKHINNAIITIEPPKKVSD
FT                 MVKCYRSQEFGHIKSYCNKKFRCVKCAENHSSISCPKEKTEPATCANCHEN
FT                 HAASYKGCRIYQEISKKRSNVPNSRPALTSLYDIPRATSFIPTKPNHEKSY
FT                 ANQANYAQVVRDETEQEKSTLDRIEKLLMKQSELTSNLLNMIMMLVNKLCK
FT                 "
FT   CDS           1364..3883
FT                 /product="G3_DM_2p"
FT                 /translation="MLIIHLGGSAVIVKNTFQYKQIDNICSNIMQVASIEI
FT                 KCMHSNISIAAVYIPPRHSWKLDEINSLFRGLGRHFIAGGDYNAKHSWWGS
FT                 RLVNPKGAELYKCITNNKYSTLSTGKPTYWPTDLSKIPDLLDFIVFSGLPA
FT                 SNFQIEENFDLSSDHTPIIVTYGTTVCFKQKPYRIINAKTNLGAFKNWLEE
FT                 RICLNVSLKSGEEIESAIEALTNSIHAAGYMFTPPPNESTSRQTFLPLELR
FT                 AQIAEKKKLRKIWQTTRSPIDKRKFNKAVNNLNSRLWEIKNEATAEYLRNL
FT                 DPNTSDLYYSLWKATKYLKRPTRRDTTIVNSTRHRCTSNAEKTEAFAEHLS
FT                 SVIQPNLENDPETVAEVHNFLEAPCQMSLPINQTTISKVEEEIKELNRKKY
FT                 PGYDKVCAITIRNLPPKCIRLLTHIYNAMLRLEYFPSQWKCAEIIMIAKPN
FT                 KPENCTSSYRPISLLGTFSKVFERILLRRMLPALDELNIISEHQFGFRRGH
FT                 GTIEQCHRITHAIVNALENKNYCTGVFLDVKQAFDTVWHEGLLYKIKKWLP
FT                 APYFQIISSYLKNRIFYVREHDEFSSIYTAEAGVPQGSALGPVLYTTSTAD
FT                 LPTTNAVEIATYADDTAIIATSNDPRVASNLIQEELGLIEAWLKKWRIAVN
FT                 AQKSVQVTFSLRPGSCPPVTLNGSTIPVSETVKYLGVHLDRRLTWKQHIKA
FT                 KQTQLKKKPKKMYWLLGPRSQLSLENKLRLYKAVLKPVWTYAMQLWGTSRN
FT                 SNIEILQRYQSMTLRTITGAPWYMTNHDIHKDMELPLVKDEIKSNAERYIS
FT                 KLHDHDNVLALGLLDNTSNRRRLKRFHVLDLPYRFTNR"
XX
SQ   Sequence 3987 BP; 1481 A; 835 C; 721 G; 950 T; 0 other;
     aactgataag agactccaat ttagctgctg taaagtacca atttaagatg tcagcagaag        60
     acgaaagcaa tatttttgcg tggcaataag tgcccacaaa cccacgttcc attaagcgaa       120
     aaaatgtaaa ctccccaacg gtggcgggga aagttatgac tatcgaccat ggaccttcca       180
     cttctagcca tgataactac tttgctgtgc ttgctgaaaa ggacatgtac aaatccaaca       240
     aaagatgatg aaattaaaag cgatacacca tcatctgaaa aaccaccccc aatttttata       300
     tctgatgtca atgatatcaa cggatggctt cgttacctta acttacacat ggacagcact       360
     gaattcacgt acaagtcaca acgggacgga caaactcgca tcatggtaaa aaatgttgaa       420
     gaattcaggg aattagtcaa aaaattaaac actgaccaag tgaagtacca cacattccag       480
     cttaagcaag ttagggcatt tagagtttta gccaaaaaca tccaccactc caccgatatt       540
     gaaagcataa agaagtcaat agaaatgcaa ggccacgtag ttagaggaat tcacaacatt       600
     aaaagccgca ttaccaagga gccattacga atgtttttta tagacctaga accacataac       660
     aacaactccg agatctacaa cgtaaaacat atcaataatg ctataataac aattgaacca       720
     ccaaagaaag ttagtgacat ggtgaaatgt taccgatccc aagaatttgg gcacatcaaa       780
     tcatactgca ataaaaaatt cagatgtgtt aaatgtgctg agaatcactc aagcatctcc       840
     tgtccaaaag aaaagactga accagccact tgtgccaact gccatgaaaa ccatgccgct       900
     agctacaaag gctgcagaat ctaccaagaa atttccaaaa aaaggtccaa tgtacccaac       960
     agcaggccag cactaacatc tctttatgac ataccgagag caacatcatt cattccaacg      1020
     aaaccaaacc atgaaaaaag ttatgcgaat caagctaatt atgcacaggt agtacgagat      1080
     gagactgaac aagaaaaatc aacattggat agaattgaaa agctattaat gaagcagtct      1140
     gagcttacat cgaatttact aaacatgata atgatgttag taaacaaact atgcaagtag      1200
     atcttcgtat ccatcgtata tccatatgga atgctaacgg ctttccaacc atcgaaataa      1260
     aataacttat ttattaaaac cagaaatatt gatattctac taatttcgga aacgcacttt      1320
     acaaagaaca attttatagc cattaaggga tataacgtca taaatgctaa tcatccatct      1380
     gggtggaagt gcagttattg tcaaaaatac tttccagtac aaacaaatag acaacatctg      1440
     ctcaaatata atgcaagtgg catcgattga aataaaatgt atgcattcaa atatctctat      1500
     agctgcagta tacatcccac caagacactc ttggaagctc gatgaaatca actctctctt      1560
     tcgagggcta ggaagacact ttattgctgg aggcgactat aacgcaaagc actcatggtg      1620
     ggggtcaaga ttagtaaatc caaaaggcgc agaactatac aaatgcataa ctaacaataa      1680
     atattcaacc ttatccaccg gaaaaccgac gtactggcca acagatctta gtaaaattcc      1740
     agatctgctg gattttattg tattctctgg actaccagca agcaatttcc aaatagagga      1800
     gaattttgat ttgagctctg atcacacacc gattattgta acctatggta ctacagtttg      1860
     tttcaaacag aagccataca gaataattaa cgcaaaaacc aatctaggtg ctttcaaaaa      1920
     ctggctcgaa gaacgaattt gtctaaatgt atcgttaaaa tcaggggaag aaattgagtc      1980
     tgcaattgaa gctttgacaa attcgattca tgcagctggg tacatgttta ctccaccgcc      2040
     aaatgaaagt acaagcaggc aaacttttct accactagaa ctaagagcgc aaatagctga      2100
     aaaaaaaaag cttcgaaaaa tatggcaaac cacgcgaagc ccaatagaca aaagaaaatt      2160
     caacaaagct gtcaataacc tgaatagcag actgtgggaa attaaaaatg aagcgacagc      2220
     cgaatacctt cgaaatcttg atccaaacac aagtgacctt tattatagtc tgtggaaagc      2280
     aactaaatat ctaaagaggc caaccagaag ggataccaca attgttaata gcacgagaca      2340
     tcgctgcaca agcaacgctg agaaaactga agcttttgct gaacacttaa gctcagtcat      2400
     tcagccaaat ttggaaaatg atcctgaaac agtagctgaa gtacataact ttttagaggc      2460
     tccttgtcag atgagcctgc ctattaacca aactactatc tcaaaagtag aagaagaaat      2520
     aaaagagcta aacaggaaaa aatatccagg atatgacaaa gtctgtgcaa ttacaatcag      2580
     aaatctccct ccaaaatgca tccgattgct gacacacata tacaatgcca tgctcagact      2640
     ggaatacttc cccagtcaat ggaaatgcgc ggaaattata atgattgcta agccaaacaa      2700
     accggaaaac tgcacgtctt cataccgtcc cattagtttg ttggggacct tctctaaagt      2760
     atttgaacga atacttttaa gaagaatgtt acctgcactg gacgaactta acatcatatc      2820
     cgaacaccag tttgggttta gaagagggca cggaacgatt gagcaatgtc accgcatcac      2880
     tcatgcaata gtgaacgcat tagaaaacaa aaattactgc acgggagtat tcctggatgt      2940
     caaacaggca tttgacacag tctggcatga aggtcttctg tacaaaataa agaagtggct      3000
     acccgcacca tacttccaaa ttatatcgtc ctaccttaag aatagaatat tctatgttcg      3060
     cgaacatgac gaattttcaa gtatctacac tgctgaggct ggagttccac aagggagtgc      3120
     tttaggtcca gtgctgtaca caacttccac agctgactta ccgactacaa atgctgttga      3180
     gatagcaaca tatgctgatg atactgctat tattgccacg agtaatgacc cgcgcgtcgc      3240
     atccaactta attcaagaag aactagggtt aattgaagca tggcttaaaa aatggcgaat      3300
     agcagtaaac gcacaaaaat cagtgcaagt cacattctcg ttgagacccg ggagttgccc      3360
     gccagttaca ctaaacggct ccaccatacc agttagtgaa acggtgaaat atcttggagt      3420
     acatctggac aggcgtctca cttggaagca gcatataaaa gcgaagcaaa ctcagttaaa      3480
     gaaaaaacca aaaaaaatgt actggctctt aggaccccgc tctcaattaa gcctagagaa      3540
     caaattacgg ctgtataaag cagtcctaaa gccagtatgg acctacgcga tgcaactgtg      3600
     gggaacatct aggaactcta atattgaaat attgcagaga taccagtcta tgacgctaag      3660
     aacaatcaca ggtgctccat ggtatatgac taatcatgac atccacaaag acatggaact      3720
     tccccttgtt aaagacgaaa taaagtcaaa tgcagagcga tacataagta aactacacga      3780
     ccatgataat gtcctagcac taggcctact agataacacc agcaaccgaa ggcgactaaa      3840
     aagatttcat gtactggacc tgccatatag atttacaaat agataaaaat atgtaaatat      3900
     gtatatatat ggattgagct cactggagct caattcatcc ggtgatacaa ttatttaacg      3960
     ctacagattg caaatacaaa aaaaaaa                                          3987
//
ID   G4_DM       repbase;    DNA;    INV; 3856 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   G4_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; ORF2; AP endonuclease; RNase H;
KW   DNA binding protein; JOCKEY clad; G4_DM.
XX
NM   G4_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3856
RA   Kapitonov V.V. and Jurka J.;
RT   "G4_DM, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 1-1 (2002).
XX
DR   [1] (Consensus)
XX
CC   G4_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   Its copies have 3' poly(A) tail and they are flanked by ~10-bp
CC   direct
CC   repeats generated upon integration into genome.
CC   G4_DM forms a separate family of retrotransposons that were
CC   recently
CC   (several million years ago) active in the Drosophila melanogaster
CC   genome.
CC   There are ~30 copies of G4_DM in the sequenced genome, they are
CC   ~5%
CC   divergent from the consensus sequence and ~10% divergent from
CC   each other. The consensus sequence, which is a approximation of
CC   the
CC   G4_DM element that was active ~3 Myr ago, contains two ORFs
CC   (positions 2-1078 and 1143-3725) that encode the 359-aa G4p1 and
CC   861-aa
CC   G4p2 proteins, correspondingly.
CC   G4p1 is a putative DNA/RNA binding protein, its ~200-aa N- and
CC   ~100-aa
CC   C-terminus are missing because of a lack of sequence data.
CC   G4p1:
CC   EVQRKKNSLDNSSSTSANKFALLSDGLPDKTGNKYNKNEDLEMVNEDSATDSAKPPPIILSDVNDISEML
CC   AYLNSKIKRELFYYKTQRYGHVRVMVKSIEEFRKLVKTLNNDCVQYHTYQLKDDRAFRVVIKNLHFSTNL
CC   DEIKSDEESKGHVVRNISNLKSRATKTPLNMFYVDIEPNNKNRDNVKHIGNAIVNIEPPRKNNEIVQCYR
CC   CQEFGHTKSYCTKTYRCVKSSSRHPSNICPKNTEQPAKCANCYEEHAASYKGCRIYQELLSKKISYQSKI
CC   PEXQXRPEXKXFRNPAKFAPPNKPTYTQQSNDYQSYAQIAAGNSKTNTSLERIEQLLEKQSELTNNLLNM
CC   IMLLVNLCK
CC   G4p2 is composed of the endonuclease, reverse transcriptase and
CC   RNase H
CC   domains. Its N-terminus, about 50 aa, is missing because of a
CC   lack
CC   of sequence data.
CC   G4p2:
CC   FIKTNEIDIMLISETHFTSKPYIMVVGYDIIRADHRSFXLDLLIRRLKLDGLKFQIMDSIRENAMQAATV
CC   TIKCMHADVSVTAIYLPPRFALKEADFKNFFQKLGPQFILRGDFNDKHPWWGSRLTNPKGSELYKCIVNN
CC   SITTFSTGKPTYWPTNSRKIPNLKDFVAYFGIPESHMRIMESFDLSSDHSLIIVTYSTVAHILTKPYKVI
CC   SANTDINAFKSYLETDKIDHAVELLTEQDKVSYICTKLPARNSQSNQLYLSAEIRQQIQHKRNLRKRWQE
CC   TLYPADKRSYNKAASDLKKLLSTLRNESLAEYLRNLDPHSCNHEHNLWRATKYLKRPAKRNTVVRNCNGE
CC   WCRSDDEQAKAFAQHLHSVFQPNDIDNPQTEREVDNFLESPCQMSLPIRKISINEVSSEIKWLNSKKAPG
CC   SDKIDGITLKILPPKCVRFLTFIFNAMLRVDHFPSQWKCAEIIMILKPNKAENEVTSYRPISLLSIFSKV
CC   FEKILLKRMLPILDEFAIIPEHQFGFRRGHGTPEQCHRIINEILSAFESKKYCTATFLDVQQAFDRVWHD
CC   GLLYKIKKWLPAPYFLLLKSYLTNRHFYVQQKNEYSPLHFIKAGVPQGSVLGPVLYTLYTADMPVTNTCT
CC   VATYADDTAILATSSSKEEASQLLQAELRLIESWFLLWKIKVNALKSAQITFALRRGDCPEVSFNGSAIP
CC   QSNCIKYLGLHLDRRLTWKNHIKAKRQQLNQKSLKMTWLLGRKSATTLENKVRLYKAILKPVWTYGIQLW
CC   GTASNSNIEILQRYQSKILRQIVNAPFYISNASIHKDLGIPYVKEEIAKHSKKYIDRLRTHENNLALSLV
CC   NNNNNVRRLKRFHVLDLPDRY.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..847
FT                 /product="G4_DM_1p"
FT                 /translation="MVNEDSATDSAKPPPIILSDVNDISEMLAYLNSKIKR
FT                 ELFYYKTQRYGHVRVMVKSIEEFRKLVKTLNNDCVQYHTYQLKDDRAFRVV
FT                 IKNLHFSTNLDEIKSDEESKGHVVRNISNLKSRATKTPLNMFYVDIEPNNK
FT                 NRDNVKHIGNAIVNIEPPRKNNEIVQCYRCQEFGHTKSYCTKTYRCVKSSS
FT                 RHPSNICPKNTEQPAKCANCYEEHAASYKGCRIYQELLSKKISYQSKIPE"
FT   CDS           1260..3725
FT                 /product="G4_DM_2p"
FT                 /translation="LDLLIRRLKLDGLKFQIMDSIRENAMQAATVTIKCMH
FT                 ADVSVTAIYLPPRFALKEADFKNFFQKLGPQFILRGDFNDKHPWWGSRLTN
FT                 PKGSELYKCIVNNSITTFSTGKPTYWPTNSRKIPNLKDFVAYFGIPESHMR
FT                 IMESFDLSSDHSLIIVTYSTVAHILTKPYKVISANTDINAFKSYLETDKID
FT                 HAVELLTEQDKVSYICTKLPARNSQSNQLYLSAEIRQQIQHKRNLRKRWQE
FT                 TLYPADKRSYNKAASDLKKLLSTLRNESLAEYLRNLDPHSCNHEHNLWRAT
FT                 KYLKRPAKRNTVVRNCNGEWCRSDDEQAKAFAQHLHSVFQPNDIDNPQTER
FT                 EVDNFLESPCQMSLPIRKISINEVSSEIKWLNSKKAPGSDKIDGITLKILP
FT                 PKCVRFLTFIFNAMLRVDHFPSQWKCAEIIMILKPNKAENEVTSYRPISLL
FT                 SIFSKVFEKILLKRMLPILDEFAIIPEHQFGFRRGHGTPEQCHRIINEILS
FT                 AFESKKYCTATFLDVQQAFDRVWHDGLLYKIKKWLPAPYFLLLKSYLTNRH
FT                 FYVQQKNEYSPLHFIKAGVPQGSVLGPVLYTLYTADMPVTNTCTVATYADD
FT                 TAILATSSSKEEASQLLQAELRLIESWFLLWKIKVNALKSAQITFALRRGD
FT                 CPEVSFNGSAIPQSNCIKYLGLHLDRRLTWKNHIKAKRQQLNQKSLKMTWL
FT                 LGRKSATTLENKVRLYKAILKPVWTYGIQLWGTASNSNIEILQRYQSKILR
FT                 QIVNAPFYISNASIHKDLGIPYVKEEIAKHSKKYIDRLRTHENNLALSLVN
FT                 NNNNVRRLKRFHVLDLPDRY"
XX
SQ   Sequence 3856 BP; 1447 A; 760 C; 655 G; 993 T; 1 other;
     cgaagttcaa agaaaaaaga attccctgga caattcatca agcaccagcg caaataaatt        60
     cgctctctta agcgacggat tgcccgacaa aacaggaaac aaatataaca aaaacgaaga       120
     tctcgaaatg gtaaatgaag acagcgcaac tgattctgct aagcccccac ctatcattct       180
     gtctgacgtc aatgatataa gtgaaatgct agcctatctt aattctaaaa ttaaaagaga       240
     acttttttat tataagactc aacgttatgg acatgtaaga gtaatggtta aaagtattga       300
     agaattcaga aaattagtca aaacacttaa taatgattgt gtgcagtacc acacatacca       360
     gcttaaggat gacagagcat ttagagttgt tattaagaat ttgcattttt ccacaaattt       420
     agatgaaatt aaaagtgatg aagagtcaaa aggtcatgtt gttagaaaca taagtaatct       480
     taaaagccgt gcgaccaaaa cgccactgaa catgttctat gtagatattg agcctaacaa       540
     caaaaaccga gacaatgtaa aacacatagg taacgctatt gtcaatattg agcctccccg       600
     caaaaacaat gaaatcgttc aatgctatcg ctgccaggaa ttcggacata ctaaatcata       660
     ttgtaccaaa acgtaccgct gtgtaaaatc ctcttctcga cacccaagca acatctgccc       720
     gaaaaataca gaacaaccag caaaatgtgc caactgctac gaagaacacg ccgccagcta       780
     caaagggtgt agaatttatc aggaactctt gtccaaaaaa atcagctacc aatcgaaaat       840
     ccctgaatag caataaagac ctgagtaaaa atgatttagg aatccagcaa agtttgctcc       900
     gcctaacaag ccaacatata cccaacaaag taacgattat caatcttatg cccaaattgc       960
     tgcaggaaat agcaaaacaa acacatcact ggagagaata gagcaactat tagaaaaaca      1020
     gtctgaactt acaaataatt tacttaacat gataatgtta cttgtaaaca aattatgcaa      1080
     gtaaatctta accttggaat atggaatggc aatgggctkt ccagccatgt aaatgaaata      1140
     tctttataaa aacgaatgaa attgatatta tgttaatttc cgagacacac tttaccagca      1200
     aaccatatat catggttgtt ggatatgata taattagagc tgaccaccgt tccttttaat      1260
     tagacctttt aattagacgg ctaaaattag acggcctaaa atttcaaatt atggacagca      1320
     ttagagaaaa tgctatgcag gctgccacgg tcacgatcaa atgtatgcat gcggacgtat      1380
     ctgtaacagc aatttatctt cccccaagat ttgctctcaa agaagcagat tttaagaact      1440
     tttttcaaaa acttggacca cagtttatat tgagaggcga cttcaatgat aagcacccct      1500
     ggtggggctc cagattgaca aatccgaagg gaagcgaact gtacaaatgc atagtaaaca      1560
     atagcataac aacattttca accggcaagc ctacatactg gcctactaat agtagaaaga      1620
     taccaaactt aaaagacttc gtagcatact ttggaatccc agaatctcac atgcgaataa      1680
     tggaaagttt tgatctaagc tcagatcatt ctctaataat agtgacatac agtacagtag      1740
     ctcatatatt gacaaaacca tacaaagtaa tttctgcaaa tacagatatc aatgcattta      1800
     aaagttatct ggaaacagat aagatagacc atgctgtgga gctactcaca gaacaagata      1860
     aagtaagcta tatatgtacg aagctaccag ccagaaactc acaatcaaat cagctctatc      1920
     tctcagctga aatccgacaa caaatacaac acaagagaaa tttgcgtaaa agatggcaag      1980
     aaactctcta ccctgccgac aaaagatcgt ataacaaggc tgcatctgat ctcaaaaaac      2040
     tactgtcaac tttaagaaat gaatctctcg ctgaatatct tagaaatcta gatccacatt      2100
     cttgtaacca cgaacataat ttatggagag caaccaaata tctcaagcga cctgcaaaaa      2160
     gaaacacagt agtccgaaac tgtaatggcg aatggtgtag atctgatgat gaacaagcca      2220
     aagcatttgc tcaacacctg cactctgtat ttcagccaaa tgatattgat aacccgcaaa      2280
     cagaaagaga agtagataac tttctcgagt caccctgcca aatgagctta cccattcgta      2340
     aaatcagtat taatgaagtt tcatcagaaa ttaaatggct gaatagtaaa aaggctccag      2400
     gttcggacaa aatagatggc ataaccttga aaattctacc accaaagtgt gtacgatttc      2460
     taacgtttat atttaatgcg atgttaagag ttgaccactt cccaagccaa tggaaatgtg      2520
     cagaaattat aatgatcctt aaaccaaaca aggcagaaaa tgaagtgaca tcgtaccgtc      2580
     ccattagttt gttgtcaata ttttctaaag tatttgaaaa aatactttta aagagaatgt      2640
     tgccaatctt ggacgaattc gctatcatac ccgaacacca gtttggattc agaagaggcc      2700
     acggaacccc tgagcaatgt cacaggatta taaatgaaat tttgtcagca tttgagagca      2760
     aaaaatactg cactgcaaca tttcttgacg ttcaacaagc gtttgatcga gtctggcatg      2820
     acggcttatt atataaaatc aaaaagtggt tacctgcacc atatttttta ttattaaagt      2880
     catacttaac caatagacac ttttatgtgc aacaaaaaaa tgaatactcg cccttgcatt      2940
     ttataaaagc tggagtccca caaggaagcg tcttaggacc tgtcttatac accctgtaca      3000
     cggcagatat gccggtaaca aatacctgca ctgtggcaac atacgcggat gatacagcta      3060
     tattagctac cagctcatct aaagaggaag cctcacaact cctgcaagca gagctacgcc      3120
     ttattgaaag ctggtttctt ctttggaaaa ttaaagtcaa cgccctgaaa tctgcgcaaa      3180
     taacttttgc attaagaaga ggtgactgcc cagaagtgtc atttaatgga tcagcaatcc      3240
     cacaaagtaa ttgcataaag taccttggct tgcacctcga tcgcagacta acgtggaaaa      3300
     accacataaa agcaaagcgc cagcaactaa atcaaaaaag tttgaagatg acctggttgc      3360
     ttggccgaaa atctgcaacc actctggaaa ataaagtccg tttatacaaa gctatactaa      3420
     agcccgtgtg gacttatggc atacagctct ggggtactgc cagcaactca aatattgaga      3480
     ttctacaacg ctaccaatca aaaatattaa gacaaattgt taatgctcca ttttatattt      3540
     caaatgcaag tatccataaa gacttaggaa tcccttatgt taaagaagaa atagcaaaac      3600
     atagtaaaaa atatatagac agactaagaa cacatgaaaa taacttagcc ttaagtttgg      3660
     taaataataa taacaacgtc agaagactta aaagatttca cgtgctagat ctccccgaca      3720
     ggtattaagt attaaaacat gttatgcata gagtatgtag tagggattaa tggataacta      3780
     ctgcctctgt taatttaaga ttaattataa aatttactta ttgtcatact tttttaagac      3840
     agattgtaaa taaaaa                                                      3856
//
ID   G5A_DM      repbase;    DNA;    INV; 4227 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   19-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   G5A_DM is a non-LTR retrotransposon - a partial consensus
DE   sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; ORF2; AP endonuclease; DNA binding protein;
KW   JOCKEY clade; G5A_DM.
XX
NM   G5A_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4227
RA   Kapitonov V.V. and Jurka J.;
RT   "G5A_DM, a subfamily of non-LTR retrotransposons from the Jockey
RT   clade.";
RL   Repbase Reports 2(10), 7-7 (2002).
XX
RN   [2]
RP   1-4227
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (19-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   G5A_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   G5A_DM forms a separate subfamily of retrotransposons that were
CC   recently
CC   (several million years ago) active in the Drosophila melanogaster
CC   genome.
CC   There are about 50 copies of G5A_DM in the genome, they are ~7%
CC   divergent from the consensus sequence.
CC   The G5A_DM and G5_DM consensus sequences are 80% identical with
CC   each other.
CC   [2]: sequence updated. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..1381
FT                 /product="G5A_DM_1p"
FT                 /translation="IQVTALFNATPRIPRQVARHFLKKGSLFHHHQLPEDR
FT                 PYRIVLRNIHHEVSSEDIIACLQNEGHSVVRVYTPRNKSTSLPLNMMFIDL
FT                 KKAENNXLVVCKHRVIWEKPRKQLEPVQCHRCQGYGHTKTYCSRHFICREC
FT                 GENHPTSECRLKQDDARCCYHCGKPHAANFKGCIKYLKEASTRKHHLKTNE
FT                 PTAAGPINGPPALGVGRPSFASVVRGNQPAVQPIYSPAATATNVTTNLDSK
FT                 LEQLFSRLDRMMSLVETLMQLLLQTRLSPSAFKNGSS"
FT   CDS           1371..4082
FT                 /product="G5A_DM-orf2p"
FT                 /translation="MGPLKIATWNSIGASLKTNEFLALIELHDIDILLLSE
FT                 VHFSSRSNFRVNGFTLHTANHPDDSQHGGAAILVGSNISHQPFATLSQNHI
FT                 QAVVIQLTASRGNFNVASVYCPPTLRWTDAIVGQFITQFGTKFLAAGDWNA
FT                 KHRWWGNYRMRTRGRVLYSALAEEGIDIVATGEATCYPYRATASPSAIDFG
FT                 ISKGFRQQQIKVQLLSSDHLPLLFELDEDAQSFRSVTKMLSPQANIRIFKE
FT                 HIEATVELNIPIDTCSRLEAYVDYFTPAIIEAARQATPTPHQARLTAIRRP
FT                 PILSIEARDLLSHKRRLRRRYIATGDPSIYQQYSSTTNRLRRLLANNRKAN
FT                 LDTLLEGAGPDSNSGFSIWKLTRGIKRQPLFQSPIQDRGGLWLKTDDEKAS
FT                 AFASHLSSTFMPFNLTDDTNREAIANFLDTPTAPTRPIRHTSPQEVMMQLK
FT                 ALQPKKNPGYDGIDNRTAKFLPRKGVLALVKIFNVMLRLGHFPRQWKRARI
FT                 VMIPKPGKSPTQIDSYRPISLLPTFSKVFERILLTRLMELPQVTEHIPQHQ
FT                 FGFRKSHGCPEQIHRLVKHITHGFEHKLYTVGVFLDVKQAFDKVWHEGLLY
FT                 KMKDLLPAAHYAILSSFIADRTFDVAVRDSRSSMEHIHAGVPQGSVLGPFL
FT                 YTLYTADMPTPVNNTDEASPAQLILATYADDTAMLASHSSLQFASNAVQEW
FT                 LHAIERWTAKWNIAINCTKSACVTFTLRPQTCLGLLFDGNTIDYVSSHCYL
FT                 GVHLDRTLSWKAHITAVRAKSSWKLKKLDWLFHSSKLHMATKALLIKAILG
FT                 PTLTYAIQVWGTASKTQLNRLRVIQSRAARHASGLPWYVSNRVIERDLKVV
FT                 PLGDQINFHSSRYADRLSAHPNTLANDLVDPISLRRLKRIHPHELLTRKIV
FT                 "
XX
SQ   Sequence 4227 BP; 1215 A; 1115 C; 870 G; 1025 T; 2 other;
     cggaaaatgg aaaataatgg cccaccgcat aagtcactgg actttaagcc gatgaagcaa        60
     tttgctgcgg gcccaatgtg gccgttgctg aagaacctgc cgaattatga ccctgccttg       120
     actacgacga gtgtttcaaa tacaatttgc agtactaccc tcacaataac atcatcaagt       180
     tcaaccatct cgtccccgtg catctccact ttctcgctaa aagaaggcaa agaaggcgac       240
     atctgatcag cctttaatca actccacaaa tcgcttccaa cccctaagca aagatgaaga       300
     ttttgatatg gacgtcgtat cctcgagtga cgatgatgag ccttgttcat cgaaagacgc       360
     ccttattcgt gcctcaagga aaacaatacg gaacaaacag ccggctagtg ttaaccaagc       420
     tgacccccgc accctgaagc caatccatca ctgacccaga atgatgtttc ccaatgtggt       480
     gaacttcaca gcttttcgca gcgaactgga cgcccttgta ggagattcct acaccatcag       540
     gcactaaatt caggtgactg cgctgttcaa tgcaacgcct cggatacctc ggcaggtggc       600
     tcggcatttt ctaaagaaag gatccttatt tcatcatcac cagctccccg aggaccgacc       660
     atatagaatc gtattgcgta acatacacca tgaagtttca tcggaggaca tcatcgcatg       720
     cctacagaat gaaggccata gcgttgtacg tgtatatact ccacgcaata agtcgacctc       780
     actccctctt aatatgatgt ttattgatct caaaaaagcg gaaaataaca akcttgtcgt       840
     ctgcaagcat cgagtgatat gggagaaacc acgtaagcaa ctcgagcctg tacaatgcca       900
     tagatgtcaa ggctatggtc ataccaaaac gtattgttct cggcatttta tttgcagaga       960
     atgtggagaa aaccacccca cttcggagtg taggctcaag caagatgatg ccagatgctg      1020
     ctatcactgt ggaaagcccc atgcagctaa ctttaaaggt tgcattaaat accttaaaga      1080
     agcttctact cgtaagcatc atttgaagac caatgaaccc actgctgctg gtcctattaa      1140
     cggaccccct gcccttggcg ttggaaggcc gtcttttgcg tccgttgtca gaggcaatca      1200
     gcctgctgtt cagccaattt attcgcctgc cgctactgct actaatgtaa ctaccaacct      1260
     ggactccaaa ctggaacagc ttttttctag gcttgacaga atgatgtcgt tagtggaaac      1320
     gttgatgcaa ctacttctcc agacccgtct ttcgccctct gcatttaaaa atgggtcctc      1380
     ttaagatagc aacttggaat tcaattgggg cctccttgaa gaccaatgag ttcctcgctc      1440
     ttattgagct tcacgacata gacatcctcc tgttgtcaga agtccacttc tcctcccggt      1500
     ccaacttcag ggtcaatggc tttaccctac atactgccaa ccatccggat gacagccaac      1560
     acggaggcgc ggcgatcctt gttggatcaa atatctctca tcaaccattc gccactctat      1620
     cgcaaaatca tatccaagca gtagttattc agctgactgc aagcagagga aactttaatg      1680
     ttgcctcagt atactgccct ccgactctta gatggacaga tgctattgtt gggcagttca      1740
     tcacacaatt tggcacaaag ttccttgcgg caggtgactg gaacgcaaaa cacagatggt      1800
     ggggaaatta caggatgcgt accagaggta gggtgctgta ttctgcactt gcggaagaag      1860
     gaatcgacat cgttgcaact ggagaagcca cttgctaccc ctatcgtgca actgcctctc      1920
     caagtgccat cgatttcggg atctccaaag gctttagaca gcaacaaatt aaggtgcaac      1980
     tactgtcatc tgaycatctc cccttgctgt ttgagctaga tgaagacgcc caatcattta      2040
     gaagtgttac aaaaatgctg tctccacaag cgaacattcg gatattcaaa gaacacatcg      2100
     aggctactgt agaactcaac attcccattg acacctgcag taggctggaa gcgtacgtcg      2160
     actacttcac acctgcaatc attgaagctg caaggcaggc tacaccaacc ccacatcaag      2220
     ctcgtctcac ggccataagg aggcctccca ttttaagcat agaggctagg gacttgctca      2280
     gccacaaaag acgcctcaga agacgataca tcgcgacagg agatcctagc atttaccagc      2340
     aatattcaag tactactaat agactgcgcc gtctgctagc caataaccgt aaagcaaacc      2400
     tggatacctt attggagggt gctggtccag atagtaatag tggattctca atatggaaac      2460
     tcacgagagg catcaagaga cagcctttgt ttcaatcacc aattcaggat cgaggtggcc      2520
     tctggcttaa gacggatgat gaaaaagcaa gtgcttttgc ttcgcacctg tcctccacct      2580
     tcatgccctt caatttaaca gacgacacca atcgtgaagc catcgcaaat tttttggata      2640
     ctccgactgc tccgacacgc cccataagac atacctcacc gcaggaagta atgatgcaac      2700
     taaaggcttt gcaacccaaa aaaaaccctg gttacgatgg catagacaac cgaactgcga      2760
     aatttctacc acgcaaagga gtgcttgctc ttgtgaaaat atttaatgtc atgctaagat      2820
     taggtcattt ccccaggcaa tggaagcgtg cgcgcattgt aatgatcccc aaacctggaa      2880
     agtcaccaac acagatcgac tcataccgcc cgataagcct gctaccaact ttctccaaag      2940
     tttttgagag aattttgctt acccgcttga tggaactgcc gcaggtaaca gaacacatcc      3000
     cacaacacca attcggtttc aggaagtctc atggttgccc cgaacaaatc catcgccttg      3060
     taaagcacat cacgcatggc tttgagcaca agctttacac agtcggcgta tttttggacg      3120
     tgaaacaagc gtttgataag gtgtggcatg aaggtctgct atataaaatg aaagatctcc      3180
     tcccagcagc ccattatgcc atcctcagct ccttcatcgc tgatcggacc ttcgatgttg      3240
     cagtacgaga ctctcggtca agcatggaac acattcatgc aggggttcca cagggaagtg      3300
     tgcttggacc cttcctgtat accctgtaca ctgctgacat gccaacaccc gtcaacaaca      3360
     ccgatgaagc gtcccctgct cagctgatcc tggccaccta cgctgatgac accgccatgc      3420
     ttgcgtcgca ctcatccttg caattcgctt ccaatgcagt tcaggaatgg ctgcatgcaa      3480
     tcgagcgatg gactgccaaa tggaacatag ccattaactg cactaagtcg gcctgtgtca      3540
     catttaccct gcgacctcaa acctgcctag gtcttctctt cgacggaaat accattgact      3600
     acgtctcatc ccactgctac ctcggagttc accttgatcg gacgctgagt tggaaagccc      3660
     atatcacggc agttagagcc aaatcctctt ggaaactgaa aaagctggac tggcttttcc      3720
     actcaagcaa actccatatg gcaactaagg ctcttttaat aaaagccata ttaggtccaa      3780
     cactgaccta cgccatccaa gtgtggggaa cagcctctaa gactcagctc aataggctta      3840
     gagtaataca atcgcgagcg gcacgacatg catctgggct accctggtat gtgagcaacc      3900
     gagttattga aagggactta aaagttgtcc cattgggaga ccaaataaac ttccacagca      3960
     gccgatatgc cgacagactt agcgcccacc cgaacacgtt ggcgaatgat cttgtcgacc      4020
     ctatttccct ccgacgtctg aagagaatac atccccatga actccttaca cgtaagatag      4080
     tataatctct acatttgtat acactataat taaggaacag aatccataat atcttttaag      4140
     ctacacatta ggttaagttc agaaggaact gaacgattcc tactgactaa tgaataataa      4200
     taaatgattt aaactctaaa aaaaaaa                                          4227
//
ID   G5_DM       repbase;    DNA;    INV; 4856 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   28-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   G5_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; DNA binding protein; G5_DM; JOCKEY clad; ORF1;
KW   ORF2; RNase H; reverse transcriptase.
XX
NM   G5_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4856
RA   Kapitonov V.V. and Jurka J.;
RT   "G5_DM, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 2-2 (2002).
XX
DR   [1] (Consensus)
XX
CC   G5_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   Its copies have 3' poly(A) tail and they are flanked by ~10-bp
CC   direct
CC   repeats generated upon integration into genome.
CC   G5_DM forms a separate family of retrotransposons that were
CC   recently
CC   (several million years ago) active in the Drosophila melanogaster
CC   genome.
CC   There are about 15 copies of G5_DM in the genome, they are ~4%
CC   divergent from the consensus sequence and ~10% divergent from
CC   each other. Although the G5 copies have accumulated multiple
CC   mutations,
CC   the consensus sequence contains two ORFs (positions 411-1976 and
CC   1966-4683) that encode the 522-aa G5p1 and 906-aa G5p2 proteins,
CC   correspondingly.
CC   G5p1 is a putative DNA/RNA binding protein.
CC   G5p2 is composed of the endonuclease, reverse transcriptase and
CC   RNase H domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1976
FT                 /product="G5p1"
FT                 /note="putative DNA/RNA binding protein"
FT                 /translation="MDNGPQQKSIDYESMMLIAGAGPKEIREQMKKSWKSE
FT                 TPASATTGISNTYCSSTFTLTSTSSTISSAYIFTSSLSGNICSTAASTIHK
FT                 SASVSSIAKPQLATGWHDVSFKSRNGGIKKRAGAVFSPKMAKKVATDMPAK
FT                 ISANCFQVLSDDEDMVVGEASSSDDDEPCSSNTALKRAARKAGPKQQLKGA
FT                 HQTVPAAPKSSRHSKVPRMMFPNVVNFTAFRSELDALVGDSYTIKVLNSGD
FT                 CAVQCNSPDSYRLVARHFLDKGSLFHHHQLPEDRPYKIVMRNIHHGVPSED
FT                 IIATLQNEGHNVVRIYTPRNKATSLPLNMRFIDLKKAENNNQIKGISVVCR
FT                 HRVIWEKPRKQSEPIQCHRCQGYGHTKAYCSRHYICRECGENHPTAECKLE
FT                 QDEARFCFHCGGPHAANFKGCKKYLLEASNRKNQRKVNEPSGSGPARGPHQ
FT                 PCPPAHMSGKPSFANFVRGSQPVAKPAVIVPHASANLESKLEQLFIRLDRM
FT                 MSLVETLMQLLLQTRTFPSAAQNGSS"
FT   CDS           1966..4683
FT                 /product="G5p2"
FT                 /note="composed of the endonuclease, reverse
FT                 transcriptase and RNase H domains"
FT                 /translation="MGPLKVAAWNANGASSKTNEILAFIELHEIDILLLSE
FT                 THFVSRSTFRVPGFTLHTANHPDDSKRGGAAILIRSLISHLPFSTLSENHI
FT                 QTAVIQLTASRGTFNIASVYCPPNLRWTEADVELIIAQFGTKFLAAGDWNA
FT                 KHRWWGNYRMCTRGRVLFSALAGEGIDIVATGEATCYPFRASATPSAIDFG
FT                 ISKGFRQQEINVQLLTELSSDHLPLLFELDEDAQLFKGVTKMLSPTANTVA
FT                 FKEHIEATVDLNIPIDTCNSLEAYVDYLAATIAEAARRATPPPHQARHTTA
FT                 RRAPILSLEARELLSHKRRLRRRYIATGDPSIKQLYSSTTNKLHRLLARTR
FT                 RENLDTLLEGTGPDNNSHFSLWRLTRGIKRQPLFQSPVQSHSGLWLKTDDE
FT                 KARAFASHLTSTFMPFNLTDDSNRVAIINFLDTPTAPARPIRHTTPQEVIM
FT                 QLKALQIKKTPGYDGIDNRAAKSLPRKGVLALVKIFNAMLRLGHFPRQWKR
FT                 ARIIMIPKAGKPPTKIDAYRPISLLSTFFKIFERILLARLMELPQVVNHIP
FT                 RHQFGFRKSHGCPEQIHRLVNQVTHGFEHKLYTVGVFLDVKQAFDRVWHEG
FT                 LLYKMKALLPAPYYAILRSFISHRTFDVAVRDARSSLEEIHAGVPQGSVLG
FT                 PFLYTLYTADLPSPANNTEVSPDQLLLATYADDTAMLASHPVLQTASNAVQ
FT                 EWLHAVEKWTAKWNVAINSSKSACVTFTLRPGTCTDLTFDGNPINNVTSHC
FT                 YLGVHLDRRLTWRAHITSVKFKSLAKLKKLDWLFHSSKLQMSSKALLIKAI
FT                 LAPTWSYAIQVWGTAAKSQLNRLRVVQSRAARHASGLPWYVTNQVIERDLK
FT                 VTPLGDQINFHSSRYADRLMVHPNRLANILANPISLRRLKRVHPTDLPTRR
FT                 IV"
XX
SQ   Sequence 4856 BP; 1320 A; 1338 C; 1088 G; 1110 T; 0 other;
     acttcgtttc gcagttgcga taagccggac gcgtttttgg tgcagtgaca cagtttggtt        60
     taacaaattt acggacaagt ccacaactgt ggcacgaagt gtagtgatcg agaacataat       120
     caaattatgt gttggcaagt gaaagtgtgg cgacttttgc tagccagcgt cgcttttctt       180
     tacttggtga ggctggctca agactcactg aaaaacttca cgaggcgatc agctgtgagt       240
     gctttaagct gtaagagctt taagccctgg ctgtttcgtg tccacggtac actactactt       300
     tcaaaccgcg atcttcaaga tctatctggg tcgtgtctta gatactctgc cgctaaaact       360
     ttaagcttct agctggttcg agtcgtcgct aagcattttt ctttttgaaa atggataacg       420
     gtccacagca aaaatctatc gactacgagt cgatgatgct aattgctggc gcgggcccaa       480
     aagagatacg ggagcaaatg aaaaagagct ggaaaagtga aactccagcc tctgctacta       540
     ccggtatttc aaacacctac tgcagttcga ccttcacact gacctccacc agttcgacta       600
     tctcgtctgc gtacatcttc acctcctcct tgagcggcaa catatgctct actgctgcca       660
     gtacaattca caaaagtgca tctgtcagct caatcgcgaa gccacaactt gccaccggct       720
     ggcacgacgt ctcctttaaa tcaagaaatg gtggaatcaa aaagagagca ggcgcagtct       780
     tctcccctaa aatggcaaaa aaggttgcaa ctgatatgcc ggcaaaaatc tctgccaatt       840
     gcttccaagt cctaagcgac gatgaagata tggtcgtggg agaggcatct tcgagtgacg       900
     acgacgagcc atgctcctcg aataccgccc tcaaacgtgc cgcaaggaaa gcaggaccaa       960
     aacaacagct gaaaggtgct caccaaactg taccagccgc cccgaaatca agccgtcact      1020
     ctaaggtgcc tagaatgatg tttcccaatg tggttaactt cacagcattt cgcagcgagc      1080
     tggacgccct tgtgggcgac tcctatacaa ttaaggtcct aaattcggga gactgcgctg      1140
     ttcagtgcaa ctcccctgat agctacaggc tggtggcccg gcactttctc gacaaaggat      1200
     ctctttttca tcaccatcag ctaccggagg accgacccta caaaatagtc atgcgcaaca      1260
     ttcaccacgg agtcccatcg gaggatatca tcgcaaccct ccagaacgaa ggacataacg      1320
     ttgtacggat ttatacccct cgcaacaagg caacctctct tcctcttaat atgaggttca      1380
     ttgacctcaa aaaggcggag aacaacaacc aaataaaggg catatctgtt gtctgcaggc      1440
     acagggtaat atgggagaaa ccccgtaagc aatcggagcc gattcaatgc cacaggtgcc      1500
     aaggctatgg tcataccaag gcatattgtt ctcggcacta catatgcaga gaatgcggag      1560
     aaaatcaccc cactgcagag tgcaagctgg aacaggacga ggccagattc tgctttcact      1620
     gtggtggccc ccatgcagcc aactttaaag gttgcaaaaa gtacctgcta gaggcttcta      1680
     accgcaaaaa ccaacggaag gtcaatgaac cctctggttc tggtcctgca agaggaccac      1740
     accaaccctg tccaccagcc cacatgtctg gaaagccttc atttgcaaat tttgtcagag      1800
     gaagtcagcc cgtcgccaag cctgccgtta ttgtccccca tgcaagcgct aaccttgagt      1860
     ccaagctgga gcagctgttt attaggcttg acaggatgat gtcactagtt gaaacgctaa      1920
     tgcaactgct cctgcaaact cgcaccttcc cttctgctgc tcaaaatggg tcctcttaag      1980
     gtagcagctt ggaatgccaa tggggcctcc tcgaagacca atgagattct cgccttcatc      2040
     gagcttcacg aaatcgacat cctcctgctg tcggaaaccc atttcgtttc ccggtccacc      2100
     ttcagagttc ctggctttac cctccacact gccaaccacc cggatgacag caaacgcgga      2160
     ggtgcggcga tccttatcag atcactcatc tcccacctac ccttctccac cctgtcggaa      2220
     aatcacatcc agacagcagt tatccagctg acggcaagca ggggtacttt taacattgcc      2280
     tcagtatact gccctcctaa tctcaggtgg acggaggctg acgtcgagct gatcatcgct      2340
     caatttggca caaagttcct tgcggcaggt gactggaacg caaagcacag atggtgggga      2400
     aactacagga tgtgcactag aggcagggtg ctgttctctg ctctggcggg cgaaggtatc      2460
     gacatcgttg caactggaga agctacttgc tatccctttc gagcaagtgc cactccaagt      2520
     gccatcgatt tcgggatctc caaaggattc agacagcaag aaatcaacgt gcaactactg      2580
     acagaactgt catctgacca tctccccctg ctgtttgagc tggatgaaga cgcccagcta      2640
     ttcaaaggtg tcacaaaaat gctgtcacct actgcaaata ctgtggcctt caaggagcac      2700
     attgaggcca cagtagatct caacatcccc atagacacct gcaatagtct ggaagcgtat      2760
     gtagattacc tcgcagccac aatcgcggaa gcagcacgga gggccacacc tcccccacat      2820
     caagctcgtc acacgaccgc aaggagggct cccatcttga gcttggaagc cagggagctg      2880
     ctctcccaca aaaggcgcct caggagacgg tacatcgcaa caggagatcc tagcattaag      2940
     cagctatact ctagcaccac taacaaactg caccgtttgc tagccaggac gcgacgagaa      3000
     aatctggata ccctgctgga gggtactggc ccagataaca acagccattt ttcgttatgg      3060
     aggctcacaa gaggtatcaa gagacagccg ttgtttcaat ctcctgtcca gagtcacagt      3120
     ggcctctggc ttaagacgga cgatgaaaaa gcgagggcat ttgcttcgca cctgacctcc      3180
     accttcatgc ccttcaacct aacagacgac tcaaatcgcg tagccatcat taattttctg      3240
     gacactccga ctgcaccggc tcgccccatt aggcatacca caccgcagga agtcataatg      3300
     cagctgaagg cgctgcaaat caagaaaacc cctggttacg atggcattga caaccgtgct      3360
     gcgaagtctc tgccacgcaa aggagtccta gccttagtaa aaatatttaa tgccatgcta      3420
     aggctagggc actttccaag gcaatggaag cgtgcacgta tcatcatgat acctaaagcc      3480
     ggaaagccgc caacgaagat cgatgcatat cgcccaatca gcttgctatc aactttcttc      3540
     aagatttttg agagaatact cctagcccgc ctgatggaac tgccgcaagt agtgaaccac      3600
     atacctcgac accaatttgg cttcaggaag tcccacggct gccctgaaca aatacatcga      3660
     ctggtaaacc aggtgacgca tggcttcgag cacaaactct acacggtcgg cgtctttcta      3720
     gacgtgaagc aagcgtttga cagggtgtgg catgagggcc ttctatacaa gatgaaagct      3780
     ctccttcctg ctccctacta tgccatcctg agatcgttca tctctcatcg gactttcgac      3840
     gttgcagtgc gtgatgctcg gtccagcctg gaagagattc acgcaggagt tccacaggga      3900
     agtgttcttg ggcccttcct gtacaccctg tacactgccg acctgccatc tcccgccaac      3960
     aacaccgaag tctccccgga tcagctgctc ctggccactt atgccgatga caccgccatg      4020
     ctggcgtctc atcctgtact gcaaactgcc tccaacgcag tccaggaatg gctgcatgca      4080
     gtcgaaaaat ggactgccaa atggaatgtg gccattaact cctcgaagtc agcctgtgta      4140
     acttttaccc tgcggcccgg aacttgcaca gatctgactt ttgatggaaa ccccatcaac      4200
     aatgtcacat cgcactgcta cctaggagtt catctagatc ggagactgac ctggagggcc      4260
     cacatcacgt cggtcaaatt caagtcactg gcgaagctaa aaaagctcga ctggctcttc      4320
     cactccagta aactacaaat gagctctaag gctcttttaa tcaaagccat acttgctcca      4380
     acgtggagtt atgccatcca ggtgtgggga actgccgcca aatcccagct caataggctc      4440
     cgtgtggtcc agtcgagagc tgcacgtcac gcatctgggc tcccctggta cgtgacgaac      4500
     caggtaatcg aaagagatct gaaagttacc cctcttgggg atcagattaa ttttcacagc      4560
     agccgttatg ccgacaggct tatggtccac ccgaaccgac tagcaaatat cctagctaat      4620
     cccatctccc tccgaaggct gaagagggta caccccaccg atctccctac ccggaggata      4680
     gtataaaata ttacacatta agtaattaat aactagaaaa atttttcctt ttctacttaa      4740
     taattaagaa accacttggt ctcatataca tttatacaca caataggtta agttcagagg      4800
     aattgactga acgattcctt ttggatccaa aataaataga atgattattt aaaaaa          4856
//
ID   G6-fl       repbase;    DNA;    INV; 4435 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   G6-fl is a non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; G6_fl;
KW   JOCKEY clad; G6-fl.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4435
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   G6-fl represents the full-length of G6_DM.
XX
FH   Key           Location/Qualifiers
FT   CDS           322..1611
FT                 /product="G6-fl_1p"
FT                 /translation="MDWQAPPRTHKLGTTPRKKALRTRKSSSSSEGSTSHT
FT                 EPGEIKRKPAKKAQGEELEEKPSTSAALRKKLANNAFALLSSEEDEDDQES
FT                 SDDEPGPKDDSKPKTPEKPKPTPKTIKPPPIFIPDVTNISALVKMITTLVG
FT                 PKNNFTYKTVNGNNVRVMMPDKESYTALRLQLVAQNKRHRTFQPKDERAYK
FT                 VVIKGLHHSTDREEIIEDLRRQGHAVRDLHNPIGRRTKEPLGIFFANLEPS
FT                 SNNKDVYQVKRICRSVVTIEPPQKFNDVPQCFRCQGLGHTQRYCFLEYRCV
FT                 KCGGPHESRACEKREDDKACCFHCQADHPASFKGCPAYKRAKALAAPKTRP
FT                 VANANKAPPVASPNVTSGRSYRDALNGVHAAPQNPTTPVQTQTETPHSGQI
FT                 EAMFARMEGMMERMMERMFTQMTQLVATILNSKSCN"
FT   CDS           join(1605..3359,3363..4292)
FT                 /product="G6-fl_2p"
FT                 /translation="MQLKLHLVVWNANGLQNSKAIVEHHLKTYQIDILLVA
FT                 ETHFSPRSHFNISGYDLIHADHPSGRARGGAAILIRSGIQYLELPAFQQDW
FT                 AQCPVIRIASPQGDLDIGAVYFPPRYRITASHLSEFFEHFGPRFIAAGDYN
FT                 AKHSWWGSRANNPKGKTLFGYLQRHRLDCHSTGEPTHWPTNPLKTPDLLDF
FT                 AVSKGIGHAKISCTTNADLLSDHCAINVLINTPVLRKTPLRRLTGKYTDAA
FT                 KFASWMLSTVNPNPILNTPRDIDEAIGNLTRQMQNAAEFASPPPPKTARTP
FT                 SRDLHLWSPEIAALVTEKRRLRRVWFLTRNPRDKTALNHATKELKDKISSL
FT                 RQDSFLRFLEELSPGDPDHNLWNVTRHIKRPAKKVSAVRKADGSWCRSDAE
FT                 RAEAFAEHLYNAFSPFDCCTAEEHAETARFLNSPSSPGPPLEPVDPEEVAQ
FT                 EIALLKNNKSPGLDRIDAAALKMLPFRCTQMLASIYNSCFRLGYFPEEWKR
FT                 AEVIVLLKPEANLASYRPISLLAILSKILERVFLRRVLPVLDEAGLIPDHQ
FT                 FGFRRSHGTPEQCHRLVERILEAFEQKKYCCAVMLDVKAFDRVWHPGLLHK
FT                 LKSYLPSPHFTLLKSYTEGRAFQVRCGSAISLPRLIRAGVPQGSVLGPILY
FT                 TLYTADLPIIPSRNLTIATYADDTAFLASSSDPREASETIQRQMGALHPWL
FT                 SRWNIVVNAEKSTQTTFALRRGDCPPVTLNGVIIPNAPAPKYLGLTLDRRL
FT                 TWRPHIVSKRIQADARLRQMQWLIGRGSKLRQNHKILVYKAILKPIWTYGI
FT                 QLWGTASHTNRLRIQRFQNRCLRIACNAHPYHENVAIHRELGIPQVADEIS
FT                 RLSERYLKRLENHPNHLATNLLDNSQTSRRLMRRHPLDLPQQ"
XX
SQ   Sequence 4435 BP; 1255 A; 1341 C; 1018 G; 821 T; 0 other;
     cagtcgcgat cgaacactcg acgagtgcag acgtgcctgc ggatcgacag caaattgttc        60
     acagttttaa gtcccgttac ttgtgcccag ccacttcgcg tcgcgtgatc ttgtcgcgcg       120
     ttttgattgg cccagccaac gtacctaacg gtagttcgca ctaacaccat cgcacacccg       180
     agtgtgcgtg ttttcagcgc aagaaaccca gtgctcgaag cagcggtata tttgcaaagc       240
     agcagccacg tgctgcctgg ctcaccggct tacggtgccc agcttccccc ccctcctcac       300
     tccctatcaa ctttggagaa gatggactgg caggcccccc cgcgcaccca caagcttgga       360
     acaacaccac gcaaaaaggc tctgagaaca cgcaagagca gctccagcag cgagggaagc       420
     acctcgcata cagagccggg cgagataaag cgaaaaccgg caaagaaagc acagggagag       480
     gagctggaag agaagccaag cactagcgca gctctgcgca agaagctcgc caacaacgcc       540
     ttcgctttac tctcgagcga agaagacgag gacgaccaag agagctctga tgacgaaccc       600
     ggacctaaag acgattccaa gcccaagacc cccgagaaac caaagcccac cccgaagacc       660
     atcaagccac ctccgatttt tatccccgat gtgaccaaca tctcggcact cgtcaagatg       720
     atcacgactc ttgtaggccc gaagaacaat tttacctaca agaccgtgaa tggcaacaac       780
     gtacgtgtca tgatgccgga caaagagtcc tatacagctc tgcgtctcca acttgtggcc       840
     caaaacaaga ggcatcggac tttccagccg aaagatgaac gtgcatacaa ggttgtcatc       900
     aaaggactcc accactccac cgatcgtgag gaaatcattg aagaccttcg cagacaaggg       960
     cacgctgtta gagatctgca caatcccatt ggcagaagaa ctaaagaacc gctgggaata      1020
     ttcttcgcca acctggagcc ttccagcaac aacaaagacg tctaccaagt caagcggatc      1080
     tgcaggtcgg tagtaaccat tgaaccgccg cagaagttca acgacgtgcc tcaatgcttc      1140
     aggtgccaag gactcggtca tacacagcgt tactgcttcc tggaataccg atgtgtaaag      1200
     tgtggaggcc ctcacgaatc gagggcatgt gagaagaggg aggacgacaa agcgtgctgc      1260
     ttccactgcc aggcggacca tcctgcgtct ttcaagggat gccctgcata caaaagggcc      1320
     aaagcactcg ctgctccgaa aacaaggccc gtcgctaatg ctaacaaggc gccgcccgtg      1380
     gcatcaccaa acgtcacctc tggcaggagc taccgagacg ccctcaacgg agtgcacgca      1440
     gcaccgcaga atcccacaac cccagtccaa acccaaacag aaaccccaca ctccggtcag      1500
     atagaagcga tgttcgctcg catggaagga atgatggaaa ggatgatgga gcgcatgttc      1560
     acccagatga cacagctggt ggccaccatt ctcaacagca agtcatgcaa ttaaagctcc      1620
     acctagtcgt ctggaatgcg aacggcctgc agaacagcaa ggccatagtc gagcaccatc      1680
     tgaagaccta ccagatcgat atcctactcg tagccgaaac ccacttctcc cccagatccc      1740
     actttaatat cagcggatat gacctcatcc atgcagacca tccttctggc agagcacgcg      1800
     gtggagcagc catcctcatc aggagcggta ttcaatacct agagctgccc gcgtttcagc      1860
     aagactgggc acaatgtcct gtcatcagga ttgccagccc gcaaggagat ttagacattg      1920
     gagcggtcta ctttcccccc agataccgca taacagcatc tcacctcagt gagttcttcg      1980
     agcattttgg gccccgcttc atagcagctg gagattataa cgccaaacat tcttggtggg      2040
     gatcgcgcgc caacaacccc aaagggaaaa ctctgtttgg gtacctgcaa cgccaccgac      2100
     tggactgcca ctccactggc gagcccactc actggccaac gaatcccctc aagactccag      2160
     acctgctgga ctttgctgtg tcgaaaggca tagggcatgc gaagatcagc tgcacaacaa      2220
     atgctgatct cctgtcagac cactgtgcaa taaacgtgct aatcaacacg ccagtcctca      2280
     ggaaaacccc gctcagaagg ctcactggaa aatataccga cgccgccaag ttcgcgtcct      2340
     ggatgctctc caccgtcaat ccgaacccca tcctcaacac acccagggac attgatgaag      2400
     ctatcgggaa tctcaccagg cagatgcaaa acgctgcgga attcgcaagc ccaccgccac      2460
     caaagactgc gagaacacct agcagggacc tccacctctg gtccccggaa attgcggcac      2520
     tcgtgactga gaagaggcgt ctcaggagag tttggttctt gacgcgcaat ccaagagaca      2580
     aaacagcgct caatcacgcc acaaaggagt tgaaggacaa gatctccagc ctacgccagg      2640
     actccttcct cagattcctc gaggaactct ctcccgggga cccagaccac aatctgtgga      2700
     acgtcacccg ccacattaaa cgaccagcca aaaaggtttc cgcagtgcgc aaagcagatg      2760
     gatcctggtg ccgttcggat gctgaaagag cagaagcttt cgccgaacac ctttacaacg      2820
     ccttctctcc gttcgactgc tgcactgccg aagaacatgc tgaaacagcc cggtttctca      2880
     atagcccaag ctctcccggt cccccgttgg aaccagtcga ccctgaggaa gttgcgcagg      2940
     agattgctct actgaagaac aacaaatctc caggcctgga tcgtatagat gcggcggccc      3000
     taaaaatgct cccattccgc tgcacacaaa tgctggccag catttacaac agctgcttcc      3060
     ggctagggta cttcccggaa gagtggaaaa gagcagaggt gattgtcctc ctcaagcctg      3120
     aagccaatct cgcctcctat cgtccgatta gtttgctggc aatcctctcc aaaatactcg      3180
     aaagagtatt tttgcgcaga gtattgccag tactggatga ggctggtttg atccccgatc      3240
     accagtttgg cttcaggcgc tcccacggaa caccagagca atgccaccgg ctagtcgaac      3300
     ggatcctcga ggcattcgag caaaagaaat actgctgcgc tgtaatgctc gacgtgaagt      3360
     aggcattcga cagagtttgg catcctggac tcctccataa actcaaatcc tacctcccaa      3420
     gcccccattt taccctcctc aaatcctaca ctgagggaag agcattccaa gtcagatgcg      3480
     gaagtgcaat aagcctaccc agactgatca gagctggagt tccgcaaggc agtgtgctcg      3540
     gaccaatact gtacaccctt tacaccgcag accttcccat aatcccctcc aggaacctaa      3600
     ctatagcgac atatgcagat gacacggctt tcctcgcctc ttcatccgac ccacgagaag      3660
     cctccgaaac aatccaaagg caaatgggcg cgctacatcc ctggctcagc aggtggaaca      3720
     tcgtagtgaa cgcggaaaaa tctacccaaa caacatttgc actaaggaga ggagactgcc      3780
     caccggtcac gctaaacgga gtcatcattc ccaacgcacc cgcacccaag tacctaggac      3840
     ttaccctgga ccgcaggctc acttggcgtc cccacatcgt cagcaaacgc atacaggctg      3900
     atgcgcgtct gaggcagatg caatggctta ttgggagagg gtccaagcta aggcagaacc      3960
     acaaaatcct ggtgtacaag gcaattctca agcccatctg gacctacggg atacagctat      4020
     ggggcacggc aagccacacg aatcgcctgc gtatacagcg gttccagaat aggtgcttga      4080
     gaattgcctg taatgcgcat ccctaccacg agaatgtcgc catacatagg gaacttggaa      4140
     tcccacaagt cgctgatgaa atctccaggc tcagcgagag atacctgaaa aggctcgaaa      4200
     accaccctaa ccacctcgcc accaacctgt tagacaatag ccaaacaagc agacgtctca      4260
     tgaggagaca ccctctcgat cttccacaac aatagacaac acatataaaa cccgccacaa      4320
     atacatgtac aatagtatcc cttaagctaa tgttcccccg caaaaccatt taattattgt      4380
     ccactaggac agattttaaa taaataaacg cacgctaaaa aaaaaaaaaa aaaaa           4435
//
ID   G6_DM       repbase;    DNA;    INV; 2046 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   G6_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   endonuclease; ORF2; RNase H; JOCKEY clad; DNA/RNA binding protein;
KW   G6_DM; HAL1.
XX
NM   G6_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2046
RA   Kapitonov V.V. and Jurka J.;
RT   "G6_DM, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 3-3 (2002).
XX
DR   [1] (Consensus)
XX
CC   G6_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   G6_DM forms a separate family of retrotransposons that
CC   were recently (~0.6 Myr ago) active in the D. melanogaster
CC   genome. There are 7 copies of G6_DM in the sequenced genome, they
CC   are ~1% divergent from the consensus sequence.
CC   G_DM is the element most similar to G6_DM (72% identity).
CC   It's very likely that G6_DM elements have been multiplied as
CC   nonautonomous elements. ORF2, which encodes pol (G_DM, positions
CC   1671-4035), is almost completely deleted in the consensus
CC   sequence (positions 1743-1744).(similar to HAL1 element)
CC   G6_DM encodes G6p1, a 430-aa gag-like protein (positions
CC   322-1611).
XX
FH   Key           Location/Qualifiers
FT   CDS           322..1611
FT                 /product="G6_DM_1p"
FT                 /translation="MDWQAPPRTHKLGTTPRKKALRTRKSSSSSEGSTSHT
FT                 EPDEIKRKPAKKAQGEELEEKPSTSAALRKKLANNAFALLSSEEDEDDQES
FT                 SDDEPGPKDDSKPKTPEKPKPTPKTIKPPPIFIPDVTNISALVKMITTLVG
FT                 PKNNFTYKTVNGNNVRVMMPDKESYTALRLQLVAQNKRHRTFQPKDERAYK
FT                 VVIKGLHHSTDREEIIEDLRRQGHAVRDLHNPIGRRTKEPLGIFFANLEPS
FT                 SNNKDVYQVKRICRSVVTIEPPQKFNDVPQCFRCQGFGHTQRYCFLEYRCV
FT                 KCGGPHESRACEKREDDKACCFHCQADHPASFKGCPAYKRAKALAAPKTRP
FT                 VANANKAPPVASPNVTSGRSYRDALNGVHAAPQNPTTPVQTQTETPHSGQI
FT                 EAMFARMEGMMERMMERMFTQMTQLVATILNSKSCN"
XX
SQ   Sequence 2046 BP; 613 A; 617 C; 462 G; 354 T; 0 other;
     cagtcgcgat cgaacactcg acgagtgcag acgtgcctgc ggatcgacag caaattgttc        60
     acagttttaa gtcccgttac ttgtgcccag ccacttcgcg tcgcgtgatc ttgtcgcgcg       120
     ttttgattgg cccagccaac gtacctaacg gtagttcgca ctaacaccat cgcacacccg       180
     agtgtgcgtg ttatcagcgc aaaaaaccca gtgctcgaag cagcggtata tttgcaaagc       240
     agcagccacg tgctgcctgg ctcaccggct tacggtgccc agcttccccc ccctcctcac       300
     tccttatcaa ctttggagaa gatggactgg caggcccccc cgcgcaccca caagcttgga       360
     acaacaccac gcaaaaaggc tctgagaaca cgcaagagca gctccagcag cgagggaagc       420
     acctcgcata cagagccgga cgagataaag cgaaaaccgg caaagaaagc acagggagag       480
     gagctggaag agaagccaag cactagcgca gctctgcgca agaagctcgc caacaacgcc       540
     ttcgctttac tctcgagcga agaagacgag gacgaccaag agagctctga tgacgaaccc       600
     ggacctaaag acgattccaa gcccaagacc cccgagaaac caaagcccac cccgaagacc       660
     atcaagccac ctccgatttt tatccccgat gtgaccaaca tctcggcact cgtcaagatg       720
     atcacgactc ttgtaggccc gaagaacaat tttacctaca agaccgtgaa tggcaacaac       780
     gtacgtgtca tgatgccgga caaagagtcc tatacagctc tgcgtctcca acttgtggcc       840
     caaaacaaga ggcatcggac tttccagccg aaagatgaac gtgcatacaa ggttgtcatc       900
     aaaggactcc accactccac cgatcgtgag gaaatcattg aagaccttcg cagacaaggg       960
     cacgctgtta gagatctgca caatcccatt ggcagaagaa ctaaagaacc gctgggaata      1020
     ttcttcgcca acctggagcc ttccagcaac aacaaagacg tctaccaagt caagcggatc      1080
     tgcaggtcgg tagtaaccat tgaaccgccg cagaagttca acgacgtgcc tcaatgcttc      1140
     aggtgccaag gattcggtca tacacagcgt tactgcttcc tggaataccg atgtgtaaag      1200
     tgtggaggcc ctcacgaatc gagggcatgt gagaagaggg aggacgacaa agcgtgctgc      1260
     ttccactgcc aggcggacca tcctgcgtct ttcaagggat gccctgcata caaaagggcc      1320
     aaagcactcg ctgctccgaa aacaaggccc gtcgctaatg ctaacaaggc gccgcccgtg      1380
     gcatcaccaa acgtcacctc tggcaggagc taccgagacg ccctcaacgg agtgcacgca      1440
     gcaccgcaga atcccacaac cccagtccaa acccaaacag aaaccccaca ctccggtcag      1500
     atagaagcga tgttcgctcg catggaagga atgatggaaa ggatgatgga gcgcatgttc      1560
     acccagatga cacagctggt ggccaccatt ctcaacagca agtcatgcaa ttaaagctcc      1620
     acctagtcgt ctggaatgcg aacggcctgc agaacagcaa ggccatagtc gagcaccatc      1680
     tgaagaccca ccagatcgat atcctactcg tagccgaaac ccacttctcc cccagatccc      1740
     actcataggg aacttggaat cccacaagtc gctgatgaaa tctccaggct cagcgagaga      1800
     tacctgaaaa ggctcgaaaa ccaccctaac cacctcgcca ccaacctgtt agacaatagc      1860
     caaacaagca gacgtctcat gaggagacac cctctcgatc ttccacaaca atagacaaca      1920
     catataaaac ccgccacaaa tacatgtaca atagtatccc ttaagctaat gttcccccgc      1980
     aaaaccattt aattattgtc cactaggaca gattttaaat aaacaaacgc acgctacaaa      2040
     aaaaaa                                                                 2046
//
ID   G7_DM       repbase;    DNA;    INV; 1192 BP.
XX
AC   AC003788;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   G7_DM is a non_LTR retrotransposon - a fossil.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; G; G7_DM;
KW   JOCKEY superfamily; ORF2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1192
RA   Kapitonov V.V. and Jurka J.;
RT   "G7_DM, a family of Jockey-like non-LTR retrotransposons from
RT   drosophila.";
RL   Repbase Reports 2(8), 26-26 (2002).
XX
DR   Genbank; AC003788; Positions    1880    3071.
XX
CC   G7_DM belongs to the JOCKEY group of non-LTR retrotransposons.
CC   G7_DM is a separate family. Members of this family are 94%
CC   identical to each other. G7_DM is <70% identical to reported
CC   retrotransposons. The sequence is incomplete and represents
CC   the 3' terminal portion. CDS is damaged by mutations.
XX
SQ   Sequence 1192 BP; 364 A; 294 C; 257 G; 277 T; 0 other;
     tggtagctgg tgcagaaccg agaagcagaa agtcaacgcg ttcgccgacc atctgaaaaa        60
     cgtctttacc ccttattgcc gctgctctcc tgctgatgca gtcatttata ctcctggagg       120
     aacccctcga gcacgttgag cccataccaa cggtcacaga agaagaaact gctaaactaa       180
     ttgctgctgt caagtgcctt gaatttagat acggcacctt ggaaacgtgc cgaggtagta       240
     atgataccta agcctggaaa acctgagacc aatctcgctt tttatcgtcc cataagcttg       300
     ctgccgaaag agtattttta agtagagcat tgccagttat ggacgaagct ggcctgattc       360
     ccgatcacca gtttggcttc aggcggcgtc atcagaagaa atctgcccta gccttgaagt       420
     acggtttctg aagaccttcc tcaagggtcg caagtttgcg gtgaaatttg gtgaagcgcg       480
     ctctgatcat aaaggaattg gcccctgcta tacaatgctt acatggcaga actgactgtg       540
     ctgcagagcc gtgggagacg ctgcaaccga gctgatgcaa agctggacct cctaaacgcc       600
     tgacagaaaa agataactat agcggtcaac agcgaccagt taacggcttc cacattttct       660
     ctccgacccc acaatccctg aaaatgccat ataacggtat caccctcgat aggcgactta       720
     cctggaagcc gcatatcctg aaaaagataa accaagccaa ccagcccctc aagaaatatt       780
     attggcttat aggaagaaga tcaaagttac caacttcgtc caaggttccc atatataaag       840
     cgatcaggcc aatctggacg tatggcatcc aactatagca cagccaccgg cgctcacctg       900
     ctgaatgaca acgtcacctt ggattcccta gggtcggaga agagataaag aagtgcagcg       960
     atcggtacat aaagaggctt cataggcatc ccaacataac ggccatcttc ctactggaca      1020
     atagtgaaca acgccgaaga ctgcgcagga ctcatcccct agatttggct cgagagccgc      1080
     tgaataaata ttcaattcac ctgctaagtg tatgttaaaa aaattactta tccctggtgg      1140
     atatttttaa ataaataaaa taaaatattt gaactaaaaa aatatataat aa              1192
//
ID   Galileo_DB  repbase;    DNA;    INV; 5407 BP.
XX
AC   .
XX
DT   28-FEB-2008 (Rel. 13.02, Created)
DT   29-FEB-2008 (Rel. 13.02, Last updated, Version 2)
XX
DE   Drosophila buzzatii transposon Galileo, putative complete.
XX
KW   P; DNA transposon; Transposable Element; Galileo_DB.
XX
NM   Galileo_DB.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-5407
RA   Marzo M., Puig M. and Ruiz A.;
RT   "The Foldback-like element Galileo belongs to the P superfamily
RT   of DNA transposons and is widespread within the Drosophila
RT   genus.";
RL   Proc Natl Acad Sci U S A 105(8), 2957-2962 (2008).
XX
DR   [1] (Consensus)
XX
CC   This sequence was assembled from several PCR products. Therefore,
CC   it is listed as "consensus".
XX
FH   Key           Location/Qualifiers
FT   CDS           1349..4086
FT                 /product="Galileo_DB_1p"
FT                 /note="Putative transposase."
FT                 /translation="MAQISVVNEKSVGVKKXLEKCLGXSGAKCVIETCGAS
FT                 YRQSSVNFPVKLFSFPSKEIEFNKWVKTCHLPSNFNRKKAKICDRHFERKY
FT                 IGKRKLKANAVPTLNLCDPNFFSNSADFNDDFRLVDNRGAEHQNENVPNEC
FT                 DDELIENLLIFDDNSKKEFWQNLAVDRTPYCLNCIKREQNEVYYRKKYYEI
FT                 GLDLKKVQERYTKLKRRFISFKRVSNYRGVSFRVRRAKKTVNVFTTINSLA
FT                 HVSEQSKVLCKMLLKNTNFYNSAERVLSQNINFYSARAYEYLRDVLHLKLP
FT                 SKKSLNRWAIFKNLTPGSNPELLENLQGIVEKMSDKGKYAVLVFDEVKIKK
FT                 GLQYNSYLDEIQGFENDGEKRTKFLGQQVCVFLIRGLFENWKYVLSYTVSA
FT                 NGIRHSDLKSKVEANIGLSQALGLNVKAVVCDQGSNNRAVFDRWGIDINKP
FT                 SFHVNDKEIFAVFDAPHLVKSLRNILLRHNISTTQGTVSXNIIRKLYEIES
FT                 KNLTRLCPKLTSKHVSPNCFEKMKVKYATQVFSHSVAAAIRTVIDSGGFSD
FT                 CKDSAVATAIFIEKINRLFDCLNSHVLFDSNPYRCALTRNNNVHEYLQEMR
FT                 DYFHDLQYPQKVYCITGMIITISSVIALAENIWNDNNDLFFVATSKLNQDP
FT                 LENLFYLIRSRGATNTNPTIFEFNSIISKMLSMKVLTSASISGNCILDEDS
FT                 MLANIIKDSGSTLSVFHSQCEIHSSVYEEPSDPDFEIELSLDSTIVNIQNA
FT                 FNENALRYFAGYLLHKLLQRTDCEVCTNLLKGSDEMQCSSEYLILNKNYNY
FT                 IHQYLKLKAPSDNFYNIIKIHFDIFQKIFDKKPFIAKLKEKIILHCMRATA
FT                 KSTLHSDWFSPSHPCFDHRKFMLNQFVLILIRKNCKWLTDSIVSKSSNLSK
FT                 SKLKMIREX"
XX
SQ   Sequence 5407 BP; 1777 A; 928 C; 1027 G; 1668 T; 7 other;
     cactaaccat acaacacata gactggacaa ctggaacaaa ttaatgtgca cacttatttt        60
     ttgacattag aaccccatca acttcgtatt tgctcgggtt tttacttttc gggtcgggag       120
     agaaaaattg ctgatgacaa aatcattccg cttcgagcgc tcgacggtga cggtcgattt       180
     tccaaaaaat cctgacatgt gccgctcttt cccttgctct ctttctcttt ctgccccatg       240
     ctttttactc tctgctctct tctcacaaaa atatatgtat gctggcacaa ccagcaagca       300
     gctcacaaaa attgaaattt cttctcgacg cgatcccatt ggttcccttc tgagcgaaga       360
     gtataccgaa ttcttaaaca gctttgccat gctcatgcaa aatgttagcg ttttcatgat       420
     tatttgtgga aagggtatga aagtgttgat gtgcatacag aatatttttt ctcgctgacc       480
     atacacacac acatttacac ttcctcgcta tatgtgtagg catttatgtg cctgtgtgca       540
     atatgcttgc tgcctgtagc acattagaac cccagcagtt gatgttcgtt tggttgggta       600
     gcgatgtgag cttgcataca cacacacatt tacacttctt cgctatatgt gtaggcattt       660
     atgtgcctgt gtgcaatatt cttgctgccg cctgtagagc actattagaa ccccagcagt       720
     tgatcgttct gtacacatac acatttacac ttccttgcca tatgtgtagg catttatgtg       780
     cctgtgtgcg atacacttgc tgcatgtagc aattctaatt tccgagcgat tgctgttggc       840
     tagccaatgt cagcatgcat acgcacacac atacatacat atgtgtacgt ctgtgatgtg       900
     ataatcacaa tcgccgagta tcacttgtat aggcacttga atgaatgctc tgcctggggc       960
     atttgcatgt ttcgtgcatg ggtctcgaat attgggcgtg tgcctaccta ctttgaatta      1020
     agtaaacgat tttgggttca aattgcacga gaggtcaatt attttgtatt acctgttgat      1080
     cggttatcat ttgttcttta atatttagta cctgatttga ccctataggc aaaaatgata      1140
     catgttattc aaatgcttgc gcaaattcag gtcacatata acccttttta ataaatgcct      1200
     acatatacag gtaaaattta cccttttatc ctatataaag tagggggaag tgcacttgtc      1260
     actttagttg acactcaact tccgaaccga acggtgtttt tctaattttt acaaaacttt      1320
     acaaaatata taagtttttt ttaaaactat ggcgcaaata agtgttgtga acgagaaaag      1380
     tgttggtgtg aaaaaannnc tagaaaagtg tttaggaana agtggtgcaa aatgtgttat      1440
     agaaacatgc ggtgccagct acaggcagag ttcagtaaat tttccggtga agttgttttc      1500
     ttttccatca aaagaaatag aattcaacaa atgggttaaa acatgccatt tacccagtaa      1560
     tttcaaccgg aaaaaggcaa aaatatgtga cagacatttc gaacggaaat atattggtaa      1620
     gcgtaaatta aaagctaacg cagttccgac cctaaattta tgcgacccaa actttttttc      1680
     taatagtgca gattttaatg atgattttcg tttagtagac aatagggggg cggaacacca      1740
     gaatgaaaat gttccaaatg aatgcgatga tgaacttata gagaatttat taatctttga      1800
     cgacaattca aaaaaagaat tttggcaaaa tttagcagtt gataggactc cttactgttt      1860
     aaattgtata aagagggagc aaaatgaggt gtattacaga aaaaaatatt atgaaatagg      1920
     tttagatctc aaaaaagtac aggaaagata tacaaagtta aaaagaaggt ttatttcttt      1980
     taagagagtt tctaattata gaggggtttc atttagagtt aggagggcaa aaaaaactgt      2040
     taatgtcttt acgacaatta acagtttggc acatgtttcc gaacaatcaa aagttttatg      2100
     taaaatgctt ttgaaaaata caaattttta taatagtgct gaaagggttc tctcacagaa      2160
     tattaatttt tattctgcca gggcatatga atatcttaga gatgttcttc atttaaaact      2220
     gccatctaag aaatctttaa atagatgggc gattttcaag aacttaacac ctggatctaa      2280
     tccagagttg ctagaaaatc tgcagggtat tgtagaaaaa atgagcgata agggaaagta      2340
     tgcagtatta gttttcgatg aggttaaaat taagaaaggt cttcaatata attcatatct      2400
     tgacgagatt caggggtttg aaaatgatgg agaaaaaaga actaagtttc taggtcagca      2460
     ggtctgtgtt ttccttatta ggggcctttt tgaaaattgg aaatatgttt taagctatac      2520
     tgtttcagct aatggcataa gacattcaga tcttaaatct aaagttgagg caaacattgg      2580
     actatcgcaa gcattaggtc ttaatgtcaa agccgttgtt tgtgatcagg gttccaataa      2640
     cagggccgtt tttgatagat ggggcataga cattaacaag cctagctttc atgttaatga      2700
     taaagaaata tttgcggtat tcgatgcacc acatcttgtt aaatcgctta gaaatattct      2760
     tttaaggcat aacatctcca caactcaggg cacagtttcg nnnaatataa ttagaaaatt      2820
     atacgaaata gaatctaaaa acttgacacg tttatgtcca aaattgactt caaaacatgt      2880
     gagtccaaat tgttttgaga aaatgaaagt caaatatgca acccaggttt ttagccacag      2940
     tgtagctgct gcgatacgca ctgttattga ttcgggtggg ttttctgatt gtaaggatag      3000
     tgcagttgca acggcaatat ttattgaaaa aataaataga ctttttgatt gtttaaatag      3060
     ccatgtgtta tttgacagca atccttatag gtgcgccctt acaaggaaca ataatgtgca      3120
     tgaatacctt caggaaatga gagactattt tcatgacctg caatatcctc aaaaagtata      3180
     ttgcattaca gggatgatta ttacaatctc atctgtaatt gctttagctg aaaatatttg      3240
     gaatgacaac aatgatctct tctttgttgc cacgtcaaaa ttaaaccaag atccattaga      3300
     aaatttattt tatttaatta gaagtcgggg agcaacaaat acgaacccaa ccatttttga      3360
     atttaattcc ataatatcca aaatgctttc tatgaaagtt ttaacatcgg cttcaatatc      3420
     tggaaattgt attctagatg aagattcaat gctagctaat ataataaaag atagcgggtc      3480
     caccctttct gtatttcata gccaatgtga gatacattcg tctgtatatg aagaaccttc      3540
     agatccagat tttgaaatag aattgtcatt agattcaaca attgtaaaca ttcaaaatgc      3600
     tttcaatgaa aatgcattgc gatattttgc gggatatctc ctgcacaagc tgttgcaaag      3660
     aactgattgt gaagtttgta ccaatctttt aaaaggatca gatgaaatgc agtgttcctc      3720
     tgagtatttg atacttaata aaaattataa ttatattcat caatacctta agttaaaggc      3780
     cccttctgac aatttttata acataattaa aattcatttt gacatattcc aaaaaatatt      3840
     cgacaagaag ccatttatag ctaaacttaa agaaaaaatt attcttcact gcatgcgcgc      3900
     tactgctaaa tcaaccttac atagtgattg gttttcccct tcccaccctt gctttgacca      3960
     tcgtaaattc atgcttaatc agtttgtttt aatattaata agaaaaaatt gtaaatggct      4020
     tacagatagt atagttagta aaagtagtaa tttaagtaaa agtaaactga aaatgattcg      4080
     tgaataagaa atttaaaata aataaaacat aaaacataat atatttttgt tgttatttag      4140
     tgaaaaatat gtctacataa cggatgcata ttttttgcat aaaagggtaa attttacctg      4200
     tatatgtagg catttattaa aaagggttat atgtgacctg aatttgcgca agcatttgaa      4260
     taacatgtat catttttgcc tatagggtca aatcaggtac taaatattaa agaacaaatg      4320
     ataaccgatc aacaggtaat acaaaataat tgacctctcg tgcaatttga acccaaaatc      4380
     gtttacttaa ttcaaagtag gtaggcacac gcccaatatt cgagacccat gcacgaaaca      4440
     tgcaaatgcc ccaggcagag cattcattca agtgcctata caagtgatac tcggcgattg      4500
     tgattatcac atcacagacg tacacatatg tatgtatgtg tgtgcgtatg catgctgaca      4560
     ttggctagcc aacagcaatc gctcggaaat tagaattgct acatgcagca agtgtatcgc      4620
     acacaggcac ataaatgcct acacatatgg caaggaagtg taaatgtgta tgtgtacaga      4680
     acgatcaact gctggggttc taatagtgct ctacaggcgg cagcaagaat attgcacaca      4740
     ggcacataaa tgcctacaca tatagcgaag aagtgtaaat gtgtgtgtgt atgcaagctc      4800
     acatcgctac ccaaccaaac gaacatcaac tgctggggtt ctaatgtgct acaggcagca      4860
     agcatattgc acacaggcac ataaatgcct acacatatag cgaggaagtg taaatgtgtg      4920
     tgtgtatggt cagcgagaaa aaatattctg tatgcacatc aacactttca taccctttcc      4980
     acaaataatc atgaaaacgc taacattttg catgagcatg gcaaagctgt ttaagaattc      5040
     ggtatactct tcgctcagaa gggaaccaat gggatcgcgt cgagaagaaa tttcaatttt      5100
     tgtgagctgc ttgctggttg tgccagcata catatatttt tgtgagaaga gagcagagag      5160
     taaaaagcat ggggcagaaa gagaaagaga gcaagggaaa gagcggcaca tgtcaggatt      5220
     ttttggaaaa tcgaccgtca ccgtcgagcg ctcgaagcgg aatgattttg tcatcagcaa      5280
     tttttctctc ccgacccgaa aagtaaaaac ccgagcaaat acgaagttga tggggttcta      5340
     atgtcaaaaa ataagtgtgc acattaattt gttccagttg tccagtctat gtgttgtatg      5400
     gttagtg                                                                5407
//
ID   Galileo_DM  repbase;    DNA;    INV; 5989 BP.
XX
AC   BK006357;
XX
DT   27-FEB-2008 (Rel. 13.02, Created)
DT   07-DEC-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   Drosophila mojavensis transposon Galileo, complete.
XX
KW   P; DNA transposon; Transposable Element; Galileo_DM.
XX
NM   Galileo_DM.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-5989
RA   Marzo M., Puig M. and Ruiz A.;
RT   "The Foldback-like element Galileo belongs to the P superfamily
RT   of DNA transposons and is widespread within the Drosophila
RT   genus.";
RL   Proc Natl Acad Sci U S A 105(8), 2957-2962 (2008).
XX
DR   EMBL/GenBank/DDBJ; BK006357; Positions       1    5989.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1249..1569,1853..2626,2508..3167,3101..4579)
FT                 /product="Galileo_DM_1p"
FT                 /translation="MQTKCSVSMDIRGKGMKVLMRTKNMISRQACTHTCTL
FT                 STCMTKCMTVREALAASCTHKEYIFPTSMHTHIYSMGFCLQPSRNSILSQY
FT                 VRQMSVVVPFYMYLLLCMCQRNGGKCIIETSGASYRNSSIHSPVSLFAFPS
FT                 KEYYLNKWIIACNLPNNFDRKRARICNRHFERKYIGKRYLKANAVPTLHLG
FT                 NSNLISNNNADVSDDIYSLDIQEEAITPHSYQKKCLNKVVDDFMKPSDTEQ
FT                 QHQSSNIQTQSDGEENLENFLSFDNSLQNQLWQDLSASRSSFCSNFLKREQ
FT                 NEVYYRKKYYEMKVALQNVQNKNYNLKKRYSFLRNAHRQRNIYQRARKEKN
FT                 NLPHVSDQSKVLCKMLFKKSGLEMLIGKETFTKEPERRKTIYLMFQTNQRS
FT                 YVKCFLKNQVYNSAEKVISQNMHFYSARAYDYLRDVLNLRLPCKKQLNRWA
FT                 ILKNLVPGFNPELLENLKDIVGKMSAKEKYTVLVCDEIKVKRGLQYNSSLD
FT                 EIQGFENDGIKRTKFLGQQVCVFLVRRLFDNWKYVLSYTVSARGINHTDLK
FT                 KKFEENIGLSQALGLKSKPLFAIRDPIIKQCLIDGVLIVKAVVCDQGSNNK
FT                 AVFNRWGIDLNNHSFEVNGEKFFAIFDAPHLVKSLRNILLKNNILAPEGTV
FT                 SWGIIRRLYETETKNLTRLCPKLTLKHVSPNCFEKMKVKFATQIFSHSVDA
FT                 AIRTVVETGGFADCKDSAVATAIFIDTINNLFDCLNSHVLFDSNPYRCALR
FT                 ENNNVHEYLQEMRDYFLNLHYPHKVYCIDGMLITISSVIALAEDIWNNNTD
FT                 IFFVATSKLNQDPLENLFYLIRCRGGTNSNPTVFEFNTIISKMLSMKMLTS
FT                 ASVSGNCIPDEDLMLANIIKDSGSQLSVFHEQCNSCHTPTEIEPLEDDLEI
FT                 ELSLDTTIANIKNDFNENALRYFAGYLLHKLLQNTDCEVCTNLLKSSDEMQ
FT                 CSSEYLILNKNFHYINRYLKLKAPSDHFYNLIKLHFESFRKIFEKKPYIAR
FT                 IKEKIVLYCMHATAKSSLDNEWFSPTHPCFEHRKSILNQFVLILIRKNCKW
FT                 QTEKIVGKTSISKRKLKIIHQ"
XX
SQ   Sequence 5989 BP; 1964 A; 1022 C; 1118 G; 1885 T; 0 other;
     cactgaccag agaacacata gactagacat gtagtacaaa gtttttcaac accgaaaaat        60
     ctgtctccta gggcctatca atttcgtatt tgctcggctc ttcacttttt aggttcgggc       120
     tacgaaaata tgcgaaagta caatcattcc gcttcatgcg ctcgaccgag atggtcaaat       180
     gttgaataaa agatgcctct atgctcaatt tttgttcttg ctctgtcgct ctctctgctc       240
     tctgctctct caatatgtat atgtatgtat gcatgtgagc acaagcagca gctcacgaaa       300
     atcgaaattt cttcgcgtta gactgccgtt tcttccctta cgtgaagtgt attccgaact       360
     cttcaagccg tttgccatgc gttttcgtta ttatttgtgg gaagggtatg aaagcgttgg       420
     tgcgcataat gaaaatgttt tcgcgattag catgcataca cactctcgct tgctacatgt       480
     actatgagca tttgtatgcc tgtgtgcgag gctcttgccg cctgtagcaa ttttacagtc       540
     cagcatttgc atttggtcga tcttgtgaag tcctcacata catatgtatg tatgtatgta       600
     tatacatttg attgtgtgta cgcatgggat gtgctgttca caattatggg atatcacttg       660
     tagaagcatt tgtatgccta tgtgccttta catgtgcgtg tgagtatatc tttgtttgta       720
     tgcttgggag atgaacattg gcgtgtgcct acctcaactt ttaatggtgt gaacgatttt       780
     gggttttaat tgaagaggcg cgcttatatt taaatagcgg actaactaaa gtgacaggtg       840
     cacttcccat tacttttgat acgtttttta cttgcatgca cctgtatatg tatgtacata       900
     tatgaacggg tacaggggat cgaaaatttt atcccatttt ttccactgag tttaatcttt       960
     aaaaatgcat tctgataggc aaacccacag tcattgaaat aaaatcaggt tcttaaagat      1020
     aagcgcgagt tacccagtca ctataccaca cacatatatg tacatacatg tgtgtatgag      1080
     ttactcgccg gcccgttcta tgcgctctgc gttttttgtc cttctctctc tctctttatg      1140
     ggctctcaaa tcatcaagct cagcatcgca caaaaatgaa atttgttcgc gacgatcccc      1200
     catttgagtg aagattacac cgaaatttta aaagcgtttg ccacgcccat gcaaacaaaa      1260
     tgtagcgttt cgatggatat tcgtgggaag ggtatgaaag ttttgatgcg cacaaagaat      1320
     atgatttcac gacaagcatg cacacacact tgcacactta gtacatgtat gaccaaatgt      1380
     atgactgtga gggaagctct tgctgccagt tgtacacata aagaatacat tttcccgacg      1440
     agcatgcaca cacacattta tagtatgggc ttttgtctgc agccgtcgcg aaactcaatt      1500
     ctctctcaat acgttcgtca aatgtccgtt gtagtcccgt tttatatgta tttgctatta      1560
     tgtatgtgtt agtgtgggaa acgattctta gtaagaattt cttactgcct gtggtatatt      1620
     gtaagtgtgt atgttcataa tacgtgaaca ttggcgtgtg gctgacacgg gcttttaatt      1680
     gtgcgagcga tttcgaatta aatctgcaaa agggggtgct aaccgacctt ttattatcac      1740
     ttcagagttt tctattgtta attctgccaa aatttatata agtttttttt ttttaactat      1800
     ggctgaaaca agtgctataa aaaaatcaac cgttggtgtc aaaaaatgtt aacagagaaa      1860
     tggcgggaaa tgcattattg aaacgagtgg cgcgagttat aggaacagtt ccattcattc      1920
     tccggttagc ttatttgcgt ttccgtctaa agaatattat ttaaacaagt ggattatagc      1980
     atgcaattta cctaataatt tcgaccggaa aagggctaga atatgcaaca ggcattttga      2040
     acgaaaatat attgggaaac gttatttaaa agccaatgca gttccaactt tacatttggg      2100
     caattcaaat ttgatttcaa ataataatgc tgacgtaagt gatgacattt attcattgga      2160
     catacaggag gaagctatta ctcctcatag ctatcaaaag aaatgcttaa ataaagtagt      2220
     ggatgacttt atgaagccat ctgacacaga acagcagcat cagagcagca atattcaaac      2280
     tcaaagtgac ggggaagaaa atttagagaa ttttctgagc tttgacaata gtttacaaaa      2340
     tcaattgtgg caagatttaa gcgctagtag gtcttctttt tgttcaaatt ttttgaaaag      2400
     agagcaaaat gaggtatatt atcgtaaaaa atattatgaa atgaaagtag ctcttcagaa      2460
     tgttcagaat aagaattata atttgaaaaa aaggtattca tttttaagaa atgctcatag      2520
     gcaaagaaac atttaccaaa gagccagaaa ggagaaaaac aatttacctc atgtttcaga      2580
     ccaatcaaag gtcttatgta aaatgctttt taaaaaatca ggtttataac agcgctgaaa      2640
     aagttatttc gcaaaatatg catttctact cagctagggc atatgattac cttagggatg      2700
     ttcttaattt aagactcccg tgtaagaaac aattaaatcg ctgggcgatt ttaaaaaatt      2760
     tagttcctgg atttaatcca gagctattag aaaacttgaa ggacattgtc ggaaaaatga      2820
     gcgccaagga aaaatatacc gtattagttt gcgatgaaat taaagtaaag agaggtcttc      2880
     agtataattc atctcttgac gagatacagg gatttgaaaa cgatggcata aaaaggacta      2940
     agtttttagg acagcaagtc tgtgttttcc ttgttaggag gctgtttgac aattggaagt      3000
     atgttttaag ctatacggtt tcagcccgtg gcataaatca tactgaccta aaaaagaaat      3060
     ttgaagaaaa tattggacta tcgcaagcat tggggcttaa gtcaaagccg ttgtttgcga      3120
     tcagggatcc aataataaag cagtgtttaa tagatggggt attgatttaa acaatcatag      3180
     ctttgaggtt aatggtgaaa aattttttgc gatattcgat gcaccgcatc ttgtaaaatc      3240
     ccttagaaat attcttttaa agaataatat tttagcacca gaaggtacag tttcatgggg      3300
     aataattaga agattatatg aaactgagac caagaattta acacgtttat gtccgaaatt      3360
     gaccttaaaa catgtcagtc cgaattgctt tgaaaaaatg aaagtgaaat ttgccacaca      3420
     aatctttagc cacagtgtag atgctgcgat acgcacagtt gtcgaaacag gtgggtttgc      3480
     cgattgcaaa gatagtgcag ttgcaacggc aatatttata gatacaatta ataatctttt      3540
     tgattgctta aatagtcatg tattatttga tagcaatcct tatagatgtg cccttaggga      3600
     gaataataat gtccatgagt atcttcagga aatgcgtgat tatttcctaa atctgcatta      3660
     tccacacaaa gtatattgca ttgatgggat gttgattaca atctcatcgg taattgcttt      3720
     ggcggaagat atttggaata acaacactga tattttcttt gttgccacat ccaaattaaa      3780
     tcaggacccg ttggagaatt tattttattt gattagatgt cggggaggaa caaatagtaa      3840
     tccaacagta ttcgaattca atacaataat atctaaaatg ctatccatga aaatgttgac      3900
     atcagcttcg gtatctggaa attgtattcc agatgaagat ttgatgttgg ccaatatcat      3960
     aaaagatagc gggtcccaat tatctgtttt tcatgaacaa tgtaattcat gtcacactcc      4020
     aaccgaaatt gaacccttag aagatgattt agaaatagaa ttgtcattag atacaaccat      4080
     tgccaatatt aaaaatgatt ttaatgaaaa tgcattgcga tattttgctg ggtatcttct      4140
     acacaaactg ttgcaaaaca ctgattgcga agtttgtaca aatcttctaa aatcatcaga      4200
     cgaaatgcag tgttcttctg agtatttgat actcaataaa aattttcatt atataaatag      4260
     atatcttaaa ttgaaggccc cttctgacca tttttacaat ttgataaagc tgcatttcga      4320
     atcatttaga aaaattttcg aaaagaaacc atacatcgct cgcattaaag agaaaattgt      4380
     tctgtactgc atgcacgcta cagcaaaatc atctttagat aatgaatggt tttctcccac      4440
     ccacccttgt tttgagcata gaaaatctat tcttaatcag tttgtcttaa ttctaattag      4500
     aaagaattgt aaatggcaaa ctgagaaaat tgttggtaaa accagcataa gtaaaagaaa      4560
     attaaaaata atacatcaat agggaatttg actttatatt aattttggca caattctcag      4620
     cagtagaaaa cagtgaagtg ataataaaag gtcggttagc attctccttt tcagatttaa      4680
     ttcgaaatcg ctcgcacaat taaaaaccct tggtaggcat tcgccaatgt tcacgtatta      4740
     tgaacataca tacatacata catatgtatg catgcgcata cataatatac atacatacgt      4800
     acttaaattt ttcacaggag gcatgactag agattcgcac atatgtacat acatacatat      4860
     gtaattggat gtgtatgcat gtaagtaaaa acatactcat tatgcacagt acaaataata      4920
     acaataatct taaaatctga cattatcatt gtaaactctc aacagtatgg caatggagga      4980
     aatgacgacg aacccatcgt cgccaagaag tcataatttt tgaacgcaac tggcaaacac      5040
     acatagaaat ttatatttct aaattgatta ttaatttatc ttgttaatgt tattgaatta      5100
     taaacttatt gaattatctt gttaatttta ttaaattatc cttgttttta ttgatttctt      5160
     tatattaaat ttaatgtttt ctatttttat atttattaaa ttagtgaaat aatattaaac      5220
     agattcctat ttaaaacaac tgtttttatg aattgttaat agaaaataaa aggtacttga      5280
     atacaagcgc gcatcttcaa ttaaaaccct aaatcgttca caccattaaa agttgaggta      5340
     ggcacacgcc aatgttcatg tcccatgcgt acacacaatc aaatgtatat acatacatac      5400
     atacatatgt atgtgaggac ttcacaagat cgaccaaatg caaatgctgg actgtaaaat      5460
     tgctacaggc ggcaagagct tcgcacacag gcatacaaat gctcatagta catgtagcaa      5520
     ccgagagtgt gtatacatgc taatcgcgaa aacattttca ttatgcgcac caacgctttc      5580
     atacccttcc cacaaataat aacgaaaacg catggcaaac ggcttgaaga gttcggaata      5640
     cacttcacgt aagggaagaa acggcagtct aacgcgaaga aatttcgatt ttcgtgagct      5700
     gctgcttgtg ctcacatgca tacatacata tacatattga gagagcagag agcagagaga      5760
     gcgacagagc aagaacaaaa attgagcata gaggcatctt ttattcaaca tttgaccatc      5820
     tcggtcgagc gcatgaagcg gaatgattgt actttcgcat attttcgtag cccgaaccta      5880
     aaaagtgaag agccgagcaa atacgaaatt gataggcctt aggagacaga tttttcggtg      5940
     ttgaaaaact ttgtactaca tgtctagtct atgtgttctc tggtcagtg                  5989
//
ID   Galileo_DW  repbase;    DNA;    INV; 4386 BP.
XX
AC   BK006360;
XX
DT   27-FEB-2008 (Rel. 13.02, Created)
DT   28-FEB-2008 (Rel. 13.02, Last updated, Version 1)
XX
DE   Drosophila willistoni transposon Galileo, complete.
XX
KW   P; DNA transposon; Transposable Element; Galileo_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4386
RA   Marzo M., Puig M. and Ruiz A.;
RT   "The Foldback-like element Galileo belongs to the P superfamily
RT   of DNA transposons and is widespread within the Drosophila
RT   genus.";
RL   Proc Natl Acad Sci U S A 105(8), 2957-2962 (2008).
XX
DR   EMBL/GenBank/DDBJ; BK006360; Positions       1    4386.
XX
FH   Key           Location/Qualifiers
FT   CDS           1047..3698
FT                 /product="Galileo_DW_1p"
FT                 /translation="MRSYRDGSEHFPVRMFKFPKNEFVRRQWVSKCNLQYD
FT                 VNIDRALICNLHFEKKFLGTKFLKAGAIPTLLLTDEPNLNLIATDAKIDLY
FT                 DFCEETHEEISTFQNIRKHGAEPTNILENIDNNTEKVEDISDISTDCMQFC
FT                 SNCLKKEQNEAYYRKKCFEMSENLKKEIQKVKLCNKKIRHLRNVLRNERAR
FT                 KLKYLKEKKKIDIQGLIDKKCVSKNSNTVCKMLLKNKQSWEDEEKIIAQSI
FT                 NFYSSKAYNFMRDDLELNLPCNKSLQRWAPVRNMVPGLNENLLKHLKGIFL
FT                 KMHNKSKNSVLVFDEISIRKGLQYNSHRDEVEGFVDDGIEKTDALCKQICV
FT                 FMVRGLYDNWKFVLSYVATSTGLSSSILTELVNTNIRSAKSLGLIIRAVVC
FT                 DQGPNNRGAFNKFGIKNETPYFTVDGQKIFGIYDVPHLIKSLRNILMRNYI
FT                 NTPDGRVSWQVIVKLFEIDTKNTSARMCPKLSRKHIYPNSFEKMKVKYATQ
FT                 VFSQTVASALKTLIQNGTFHDCEDVAIATCKFIEKINKLFDCLNSNNLFDK
FT                 NPFKSAIQKESDIEKYIIEMKNYLKKCQYPKKIFCMDGIILSINSILMLLQ
FT                 DIWSQGEGVYFLLLSRLNQDALEHLFYLIRSRGGTNNNPMLFEFNAIISKM
FT                 LSMKIITSRTTTGNCQADEDLLINVIEDTKHELAIDNINDQDRVCYEDVNI
FT                 SFDLYDDDMEGTEADEIQDTTLSIASANALRYFTGFVIHKSQQKFNCENCK
FT                 ELVKENIVLYDQSEFFIFNKNYKILNNNLKLKNPQDDFFSLMKMHYNIFHN
FT                 FFQKFPHARNIRQQIFNECIMRAENDKKYEDWYCESSKCIEHRKYILNYFL
FT                 VVLLKKNTIWLLEKLCGASEKSVRKIEILKS"
XX
SQ   Sequence 4386 BP; 1541 A; 720 C; 790 G; 1335 T; 0 other;
     cactaaccat agaacacata gatgggacaa actcatgatt ttttgattgc aaacgctagc        60
     ctagtcatgg aaccccagag aacttcggga aaacccgaac gctctcactc tcaatgagag       120
     cgtaaaatgg ggagagggca aagcagctac gaaaaaattt cagtctagca cagactaccg       180
     aacgacgaag gcaggcctac gtcgcttgtg atttcgttct gtctatgtat gtgtacactc       240
     gtcggtacat gctcaggctt cgtagtgtgt gtgtgacgtg aagttgtaca acatcgcatt       300
     tcaatagctc gctcgaccaa aatttttcat tttcgacaaa acagcggcaa tgcgaatagg       360
     atatgcccct gtcgaaagaa tatcaagaaa tattgacatc agctacgtat gtatcccggt       420
     ggctgtgccg atagagtgtt tgcttggcaa taggaatgtc gctggttcga atcccaactc       480
     gattatcgtt aacgaagttt ttttttgtct atttttttta tttatataaa aataaaaaaa       540
     taaaaataaa caaaaggaaa aaaaaacaaa atgaaaataa ataaaaaaaa aatcaaaaag       600
     gaacaaaata aaacaaaaaa aaaaacgaca aaaccaacaa aaaaaaaaaa caaaacaaag       660
     aaacattatt tatattatta ttaggattac cccctaagac ttcaaaattt ctattttccg       720
     aacgctcttt tcagatgcac cgcataattt ttccaaaagc catattcaac actactaaaa       780
     tgtagtttgg gtactctaaa aaaaataccg gctttactac tgcgttttgg acaaaaatat       840
     ggggatgttc ttgctcctct gttcctcttg cattattttt cacagcgttg tcaacgtttt       900
     gccgttttag ttcattctct gtgcgactgt tgaacttcga gcatcatcac ctttggcata       960
     tactcaagtt taaacagaga aaaacgatta aaaaccaggt cgttgataat agaaaaagtg      1020
     gctgcaagtg cattattgcc tcatgcatga gaagttatag agatgggtca gagcactttc      1080
     ccgtaagaat gtttaagttc cccaaaaatg agtttgttcg tcggcagtgg gtttctaaat      1140
     gtaatttgca atatgatgtg aatattgata gggccttgat ttgcaactta cactttgaaa      1200
     aaaaattttt gggtacaaaa tttttaaagg caggtgctat accaacttta ttgttgaccg      1260
     atgagccaaa tttaaattta attgcaactg atgcgaaaat tgatttatac gatttctgtg      1320
     aggaaacaca cgaagaaatt tctactttcc aaaatatacg taaacacggg gcagaaccca      1380
     caaatatttt ggaaaatatc gacaacaata ccgaaaaagt tgaagacata tcagacatat      1440
     caactgattg tatgcaattt tgttccaatt gtcttaaaaa agaacaaaat gaagcatatt      1500
     atagaaagaa gtgctttgaa atgtctgaaa atctaaagaa agaaatacaa aaggtcaaac      1560
     tatgtaacaa aaagataaga catttgagaa atgtattgcg aaatgaaaga gcaagaaaac      1620
     ttaaatattt aaaggaaaaa aagaaaatcg atatacaagg attaattgac aaaaagtgcg      1680
     tttcaaaaaa ttcaaacact gtttgcaaaa tgttacttaa gaacaagcag tcgtgggaag      1740
     atgaagaaaa aattattgct caaagcatta atttttattc ttctaaggcc tataatttta      1800
     tgcgtgacga tctggagtta aatcttccat gcaacaagtc tctgcaaaga tgggctcccg      1860
     taagaaacat ggttccgggc ttaaatgaaa atttattgaa acatttaaaa ggaatttttt      1920
     tgaagatgca caataaaagt aaaaattccg tattagtttt tgatgaaatt tcaataagaa      1980
     aaggcctgca atataactcc cacagagatg aagtggaagg ttttgtagac gacggtattg      2040
     agaaaacgga tgctttgtgt aagcaaatat gtgtttttat ggtgagggga ctctatgaca      2100
     attggaagtt tgttttaagc tatgtagcaa cttccactgg actctcttcg tctatattaa      2160
     ccgagttagt taatactaat attagatccg caaaaagctt gggcttaatt attagagcag      2220
     tcgtatgtga tcaaggccca aataaccgag gagcattcaa caagtttggt ataaaaaatg      2280
     agacaccgta ctttactgtt gacggtcaga aaatatttgg catatacgat gtcccccacc      2340
     tcataaaatc attaagaaat attttaatgc gaaactatat taatactccg gatggtagag      2400
     tctcttggca agtaattgtc aaattgtttg aaatagacac aaaaaacact tccgcaagaa      2460
     tgtgcccaaa attatcccga aaacacatat atcccaactc atttgagaag atgaaggtga      2520
     aatatgcaac acaggtattt agccaaacag ttgcttctgc actcaagacg ctaatacaaa      2580
     acggcacttt tcatgactgc gaagatgtgg caatcgcgac atgtaagttt attgagaaga      2640
     ttaataagct gtttgattgt ttaaatagca acaatttatt tgacaagaac cccttcaaat      2700
     cagccattca aaaagaaagt gacattgaaa agtacattat tgaaatgaaa aactacttga      2760
     agaaatgtca atatccaaaa aaaatttttt gtatggatgg aattatttta tcaataaatt      2820
     caatattaat gcttttgcaa gatatttgga gtcaaggaga aggtgtatat tttctattat      2880
     tgtcacggct aaatcaagat gctctcgagc acctatttta cttaataaga agtagaggtg      2940
     gaaccaacaa caatccaatg ctttttgaat tcaacgcgat aatttcaaaa atgttgtcaa      3000
     tgaaaatcat aacatcaaga acaaccactg gaaattgcca ggcagacgag gacttgctaa      3060
     taaatgtcat tgaagataca aagcatgaac tggcaattga caatataaat gaccaagatc      3120
     gggtatgtta cgaagacgtc aacatcagtt ttgacctata cgacgatgat atggaaggta      3180
     ccgaggctga tgaaattcag gacacaacct tgagtatagc ttctgcaaat gcattacgat      3240
     attttacggg attcgtgata cataagtcac aacaaaagtt taattgcgag aattgcaaag      3300
     aacttgttaa agaaaacatt gtcctctacg accaatccga gttttttata tttaataaaa      3360
     actataaaat attaaataat aatttaaaac tcaaaaaccc tcaagacgat ttttttagtc      3420
     taatgaagat gcactataat atttttcata atttcttcca aaaatttcca catgctcgaa      3480
     atataagaca acaaattttc aatgaatgta ttatgcgtgc tgaaaacgac aaaaaatacg      3540
     aagattggta ttgtgaaagt agtaaatgca tagagcatcg aaaatacatt ttgaactatt      3600
     ttctggtagt gttgttgaaa aaaaatacta tatggctttt ggaaaaatta tgcggtgcat      3660
     ctgaaaagag cgttcggaaa atagaaattt tgaagtctta gggggttatc ctaataataa      3720
     tataaataat gtttctttgt tttgtttttt tttttgttgg ttttgtcgtt tttttttttt      3780
     tgttttattt tgttcctttt ttattttttt tttatttatt ttcattttgt ttttttttcc      3840
     ttttgtttat ttttattttt ttatttttat ataaatagac aaataaaaac ttcgttaacg      3900
     ataatcgagt tgggattcga accagcgaca ttcctattgc caagcaaaca ctctatcggc      3960
     acagccaccg ggatacatac gtagctgatg ccaatatttc ttgatattct ttcgacaggg      4020
     gcatatccta ttcgcattgc cgctgttttg tcgaaaatga aaaattttgg tcgagcgagc      4080
     tattgaaatg cgatgttgta caacttcacg tcacacacac actacgaagc ctgagcatgt      4140
     accgacgagt gtacacatac atagacagaa cgaaatcaca agcgacgttg gcctgccttc      4200
     gtcgttcggt agtctgtgtt agactgaaat tttttcgtag ctgctttgcc ctctccccat      4260
     tttacgctct cattgagagt gagagcgttc gggttttccc gaagttctct ggggttccat      4320
     gactaggcta gggtttgcaa tcaaaaaatc atgagtttgt cccatctatg tgttctatgg      4380
     ttagtg                                                                 4386
//
ID   Gecko       repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   19-MAR-2010 (Rel. 15.03, Created)
DT   19-MAR-2010 (Rel. 15.03, Last updated, Version 1)
XX
DE   Consensus sequence of Gecko SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; mosquito; Gecko.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-198
RA   Tu Z., Li S. and Mao C.;
RT   "The changing tails of a novel short interspersed element in
RT   Aedes aegypti: genomic evidence for slippage retrotransposition
RT   and the relationship between 3' tandem repeats and the poly(dA)
RT   tail.";
RL   Genetics 168(4), 2037-2047 (2004).
XX
RN   [2]
RP   1-198
RA   Luchetti A.;
RT   "Submission to Repbase.";
RL   Direct Submission to Repbase Update (19-MAR-2010).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus.
XX
SQ   Sequence 198 BP; 64 A; 44 C; 50 G; 40 T; 0 other;
     ggggacggac ctggtgtagt ggttagaaca ctcgcctctc acgccgagga cctgggatcg        60
     aatcccatcc ccgacatagt cacttatgac gtaaaaagtt atagtgacga cttccttcgg       120
     aagggaagta aagccgttgg tcccgagatg aactagccca gggctaaaaa tctcgttaat       180
     aaagatagaa aaaaaaaa                                                     198
//
ID   Gedeo_DSe   repbase;    DNA;    INV; 7516 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gedeo_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7516
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-599, and
CC   6918-7516). 4 amino acids of ORF3 overlap the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           901..2274
FT                 /product="Gedeo_DSe_1p"
FT                 /translation="MSWAAYRDIKVERDSDDEFDLESVGFCPNTTDSPAAM
FT                 DAAQLQAIIAGAVNQALAEQESRLNQRFQAQLDEVKKQMQSLRVEAPQIEA
FT                 YQKIQPDPNIPCGVKLDIVKTLPDFSGEQDDYVSWRQSAVDAYEIFKRYEG
FT                 SEAHYQAVSIIRNKIRGSARGLLVAHNTVLNFDAIIARLDCTYADKTSLRV
FT                 LRQGLETVRQGDLSLMQYYDEVEKRLTLITNKIVMTHEPGSAILFNNEVRE
FT                 DALHAFIAGLRKPLRAIVLPAQPKDLPSALALARESEATIERTNFAATYAR
FT                 ALEDKASTYQHRKDRNRSREPQGRYSRAEDSQGRNPHFYKKQGKQNNSAQS
FT                 NNSSRNQSPEPMELGSTVIQRRQPISFGSGQPTNAKAESARGQKRFGSARL
FT                 TGQRRQRLQNTMQQADDKNDSEYDGAAAAAITEIDDESDENDQINFLGNAP
FT                 DCRSLNDSCKGGN"
FT   CDS           2412..5309
FT                 /product="Gedeo_DSe_2p"
FT                 /translation="MNIFGKTSAFFLLDALSPFDGIVGFDLLAQVGAKLDA
FT                 KKGTINYGSVSEKLQHHNCDNVNFTNVNDIAVPEPVKTQFRGMIESRSKAF
FT                 SASDEALPFNTSVVATIRTTDDKPVYSKLYPHPMGVSEFVKREIADLLQKG
FT                 IIRTSKSPYNNPTWVVDKKGHDELGNKNKRLVIDFRKLNEKTIADKYPMPN
FT                 IPMILANLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLP
FT                 FGLKNAGSIFQRAIDDVLREQIGKSCYVYVDDVIIFSENENDHVKHIDWVL
FT                 KSLCNANMKVSSEKTHFFKQSVEYLGFIVTNGGAKTDPEKVKAIKEYPEPT
FT                 NLYELRSFLGLASYYRCFVKDFAAIARPLTDLLKGVNGSISKHMSKKTPIE
FT                 FGDLQRDAFERLRNVLASEDVILRYPDFRKPFDLTTDASANGIGAVLSQDK
FT                 RPITMISRTLKESESHYATNERELLAIVWALGKLQHYLYGTRDINIYTDHQ
FT                 PLTFAVSDRNPNPKIKRWKAYIDDHNAKIHYKPGKDNHVADALSRQNINAL
FT                 QNEPQSDAATIHSELSLTYTVETTHQPVNCFRNQIVIEEARFRLKRSLVLF
FT                 RSKTRHLINFTDKSTILETLKEVVNPEVVNAIHCDLPTLASFQHDLISHFP
FT                 ATQFRYCKNMVIDVTNRNEQLEIITTEHNRAHRAAQENTKQVLRNYYFPKM
FT                 SSLAKEVVANCRICTKAKYDRHPRKQELGETPIPSYTGEMLHIDIFSTDKK
FT                 QFLTCVDKFSKFAIVQPVLSRTIVDVTGPLLQLVNVFPKIRTIYCDNEAAF
FT                 NSETVNSLLKNSYHIDIVNAAPLHSSSNGQVERFHSTLTEIARCLKLDKKI
FT                 SDTTELILRATVEYNKTLHSVTQEKPVEILHSGSDDRCLGVRDKLIKAQKN
FT                 NIERCNPARQNRVFEVGDEVFVKNNKRLGNKLTPLCTEQTVQADLGTSVLI
FT                 KGRVVHKDNLK"
FT   CDS           5638..6927
FT                 /product="Gedeo_DSe_3p"
FT                 /translation="MVDETKKLSASFPQSHMRKLLDVDTDHLINLLSVLKI
FT                 HHRIARSLDFLGTALKVVAGTPDASDFLKIKMTEAQLVDSNSRQININSET
FT                 QIQINKLTDTVNKIIKARNNDLVDTPHLYEALLARNRMLTTEIQNLILTIT
FT                 LAKANIVNPTILNHADLSSLIEQDTPIVSLLEASKIRVLQSDSIIHILIAY
FT                 PRVKVRCKKVLVYPVSHYQTILRLDEDILAECEEDTFSVTECMETTHSTFC
FT                 ERSRRETCARSLHAGNTAQCHTQSSHLRAVMPIDDGIVIINEATARISTDG
FT                 GPEVLVKGTHLVTFERSAIINGSEFVNFRKTIDKQPGVARSPLLNIVGHDP
FT                 ALSMPLLHRMNNDNLRFIQGFKDEVDAAGSPKLWFVAGVVLNVGLIGSLIL
FT                 FLALRRRRASAEIQHTIDKLNITEDGQNLRGGVVNN"
XX
SQ   Sequence 7516 BP; 2324 A; 1725 C; 1678 G; 1789 T; 0 other;
     agttaacaac taagttgcca catataaaca atgctgacgc gccccaacgg agttcagcgc        60
     tctgcgctgc gaacggtcag caacagcaat tggacacccc ttatccgggg taccaagctg       120
     tgttgcataa atgctgagtc ggcttgccga ccatgggttt atggcgtgat gcattgaagc       180
     tagggtagat ccacattttt catattcttt tgtatttagt tctaagcttg cactttaaga       240
     ataaagacca gctactccgg cacttggccg taaaacacca cttgttttaa ttaaacattc       300
     tcgttgagcc aaaaggccat cgaaagacca cgggggcaaa gtcacgccct ccatcctaat       360
     cttcctaaga cgtcttcgcc cagccaaagg agacgacacg cataacacct atacaacgga       420
     gtcacctata agagaggacc accggacgat aggatttatt aattggcgcc caacgtttat       480
     tacggaccta gagtatctta acagggtagt taagagagga aaatatgtaa gttcaatgag       540
     tgaatttaat tcggcagtct tcgattatta aataaataaa aaatagaaag ctaacaattc       600
     gttgcatact ttttccaaag tgttatttac cgttgcatac cccaagttat tgtgagctat       660
     tgctgcgtgc ttttaggaag ttgaatttcc gttgcatact tttaccaaag tgttatttac       720
     cgttgcatac cccaagttac tgtgagctat tgctgcccaa aggaataaat aataaataat       780
     aaatagtaaa taaattattc ctttgcgcaa gcctgttctt ttgaaagaaa attttgtcga       840
     tttccatttc tcgcgcactt agatagtgaa atatatgtgc gaggtgtcaa ccaatggtaa       900
     atgagttggg cggcatatag agacattaaa gtcgagcgcg atagtgacga cgagtttgat       960
     ttagaatcag taggtttttg tccgaatact acagatagcc ctgcagccat ggacgccgca      1020
     cagctacaag ctattatagc tggagctgtt aaccaggctt tggccgaaca ggaaagcaga      1080
     ctaaatcaaa ggttccaggc acagttagat gaagttaaaa aacaaatgca gagcttgcgt      1140
     gtagaagcac cacaaataga ggcataccag aaaatacaac cagaccctaa cataccatgc      1200
     ggagtcaagc tggacattgt gaagacattg ccagattttt cgggggagca ggacgactat      1260
     gtgtcatggc ggcagtcagc cgtagacgcg tacgaaatct tcaaacgata tgagggtagc      1320
     gaggcgcatt atcaggccgt ctcgattatc agaaacaaaa ttagggggtc agcgagaggg      1380
     ctactagttg cccataacac agtcttaaat ttcgatgcta ttattgctcg actagattgc      1440
     acctacgcgg acaaaacgtc gctgcgtgta cttcggcagg gacttgaaac agttaggcaa      1500
     ggagacctta gcctaatgca gtattatgac gaggtagaaa aacgattgac gttaataaca      1560
     aacaagatcg ttatgactca cgaaccgggt agtgctattc tgtttaacaa tgaagttaga      1620
     gaggatgctc tccacgcgtt cattgccggt cttaggaagc ccttgagggc catagtcttg      1680
     ccggcgcagc ccaaggattt gccctcagct ttagccttgg ctagggaatc cgaggctacc      1740
     atagagcgca ctaattttgc cgccacatat gcgagggctt tagaggacaa ggcaagcact      1800
     tatcagcacc gaaaagatcg gaaccgctca agggagccgc agggaagata cagcagggcc      1860
     gaggatagcc aaggcagaaa cccccatttt tacaagaagc agggtaagca aaataattct      1920
     gcccaaagta ataactcctc tcggaatcag tcacctgagc ctatggagtt aggctccact      1980
     gtaatccaac gtaggcaacc gatctcgttt ggaagcggtc agcctacaaa cgccaaggcc      2040
     gagagtgctc ggggccagaa aagattcggt tccgcacgct tgacaggtca gaggcgtcag      2100
     agattgcaga acaccatgca acaggctgac gataaaaatg acagcgaata tgatggcgcg      2160
     gccgcagcgg ccattaccga gatagatgac gagtctgacg aaaatgatca gatcaatttt      2220
     ttagggaacg ctcccgactg ccgttcattg aacgacagct gcaagggagg caactaaaaa      2280
     ttttaatcga cacaggggcg gcaaaaaact acatcaagcc cgtaaaggag cttaaacatg      2340
     tggtgcccgt cgattcccct ttcacggtta gttccattca tggctctaac agggttcacc      2400
     aaaaatgttt aatgaatatt tttggaaaaa catctgcgtt cttccttttg gacgcactgt      2460
     caccattcga tggtattgta gggtttgacc tcctagctca ggtgggagca aaactcgacg      2520
     caaagaaagg tacgataaat tatggttctg tttctgagaa gcttcagcat cataattgcg      2580
     ataatgttaa ttttactaac gtaaatgaca tcgccgtacc agagcctgta aagacgcaat      2640
     ttcgaggtat gatcgaaagc agatctaagg cgttttcagc ctctgacgag gcacttccgt      2700
     ttaacacctc tgttgttgcc acaattcgca ctacagatga taagccggta tactccaagc      2760
     tatacccgca tcccatgggc gtgtctgagt tcgtcaagcg agaaatcgca gacttactgc      2820
     agaaaggcat cattagaact tcaaagtcgc cgtacaacaa cccaacttgg gttgtggaca      2880
     aaaaaggcca cgatgaattg gggaacaaaa ataagcgttt ggttatagac tttaggaaac      2940
     ttaacgaaaa gaccatcgct gataagtacc caatgccaaa catccccatg atactggcga      3000
     acttaggaaa agctaagtac tttacgacgt tagatctaaa gtccggttac caccagatat      3060
     acttggccga acatgaccgt gaaaagacct ccttttcggt aaacggcgga aagtatgagt      3120
     tttgtcggtt accgttcgga ttgaagaatg cgggaagcat cttccaaaga gcgatcgacg      3180
     acgtcctacg agagcaaatt ggcaaatcgt gctatgttta cgtagatgac gtcattattt      3240
     tttccgaaaa cgaaaatgac cacgtcaagc atatagattg ggttttaaaa agcctgtgca      3300
     atgccaacat gaaggtatcc agcgaaaaga cacacttctt taagcagagt gttgaatatc      3360
     tggggttcat tgttaccaat ggaggtgcaa aaaccgaccc agaaaaggta aaggccataa      3420
     aggaataccc agagcctaca aatttgtatg agctaaggtc gtttctgggt ttggctagtt      3480
     attaccgttg cttcgtgaag gactttgcgg cgatcgcgag gcccttgacg gacttgctga      3540
     aaggagtaaa cggctctatc agcaaacaca tgtccaagaa aactcctatc gagttcggtg      3600
     atttgcagag agatgcattt gagaggctga gaaacgtctt ggcttctgaa gatgtaattc      3660
     tcagataccc cgattttagg aagccattcg atctaacgac ggatgcttct gctaacggta      3720
     ttggtgcggt tttatcgcaa gataaaagac ccatcactat gatctccagg accctaaaag      3780
     aaagcgagtc acactacgcc acaaatgaaa gagaattgtt ggccatagtg tgggccttag      3840
     gcaagttaca gcactacctc tacggcactc gcgatataaa tatttatacg gaccatcagc      3900
     cgttgacatt cgcggtgtcc gatcggaacc caaacccgaa gataaaaaga tggaaagcgt      3960
     acattgatga ccataacgca aaaatccact acaaaccggg taaagacaac catgtggctg      4020
     acgctctttc taggcagaac atcaatgccc tgcaaaatga gcctcagtca gacgctgcga      4080
     ctattcacag cgaactgtca ttgacataca cggtcgaaac gacacaccaa ccggtgaact      4140
     gcttcagaaa tcagattgtt atagaagaag cacgtttccg actgaagcga agcttggtat      4200
     tgtttcgtag taaaactcgc cacttaatca attttaccga caaaagcacc attttagaaa      4260
     cgctgaagga ggtagtaaac cccgaagtcg tgaatgcgat acactgcgat ctgcccaccc      4320
     tggcaagttt tcaacacgat ttaatttctc atttcccggc tacgcagttt cgatactgta      4380
     agaatatggt gatagacgtt accaatagaa atgagcagtt ggaaattatc acgacagaac      4440
     acaatcgtgc acacagggcg gctcaggaaa ataccaagca agtactgcgc aactattatt      4500
     tccccaaaat gagcagccta gcaaaggaag tggtcgcaaa ttgcagaata tgcaccaagg      4560
     ccaaatatga caggcaccct agaaaacagg agctcggaga gacacccata cctagctata      4620
     ccggcgaaat gttgcacatt gatattttct caaccgataa gaagcaattc ttaacatgcg      4680
     ttgacaaatt ctcaaagttt gcaatagtgc aaccagtgct gtccagaaca atagtggacg      4740
     tcacggggcc cctgcttcaa ctcgtaaatg tgttcccaaa aatccgaaca atatattgcg      4800
     acaatgaagc cgcctttaac tctgaaaccg tcaactcgct acttaagaat agctaccaca      4860
     ttgacattgt gaacgcggcc cctctgcaca gctcgtcaaa cggccaagtg gaaaggttcc      4920
     acagcacctt gacagaaatc gccaggtgtc ttaaactaga caagaaaatc agcgatacga      4980
     cagagttaat cttaagggca acggtagagt acaataagac cctacattct gtcactcagg      5040
     agaaaccggt cgagatcctc cactcgggtt ccgatgatcg ctgcctaggc gttagagaca      5100
     agctgataaa ggcccagaag aacaacatcg aaagatgcaa cccagctaga caaaaccgtg      5160
     tttttgaggt aggagacgag gtttttgtca aaaacaataa aaggcttgga aacaaactga      5220
     caccattgtg cacagaacaa acagtgcagg cagacctagg aacgtctgtt cttattaagg      5280
     ggagggtggt ccataaggac aacctaaaat aggtcccccc acttttagtt agctttaaga      5340
     tattccttat gtttttttta ttcgtcttta aatagcagca actaaactta gagggcgagg      5400
     aggcaaattt atataaattt ccagtagtag gcctgattta agctaatatg ccgtggtctt      5460
     attctacgtt tggtttgcag gttcgccctc ataacactca tcaccctggc agtggcaagt      5520
     gctcggatta ccgacttttc ccacgccaac tacattcccg tcgtagacgg agatgtactg      5580
     gtgtttgagc atcgaaattg cctgagacat tcgagcaacc tgtctgatta tatttacatg      5640
     gtagatgaaa caaagaaatt gtccgcttcc tttccacagt cgcatatgcg aaagttgtta      5700
     gacgtcgata cagatcacct tataaacttg ttgtccgttc taaaaataca tcaccgtatc      5760
     gctagaagcc tagacttctt aggtacggct cttaaggtag ttgcgggaac tcccgacgcc      5820
     tcagattttc taaagatcaa aatgaccgaa gctcagctag tggattccaa ctccagacaa      5880
     attaatataa attccgaaac ccaaatacaa ataaacaaac tgaccgacac cgtgaacaaa      5940
     attattaaag cccgaaacaa cgacttggtc gacaccccgc atctgtacga ggcactacta      6000
     gcgagaaata gaatgctgac aacagagatc caaaatttaa ttctcacaat aacattggca      6060
     aaagctaaca tagtaaatcc cacaatcctt aatcatgccg atttaagctc attaattgaa      6120
     caagacactc caatagttag cttattagaa gcctctaaga ttagggttct tcagtccgat      6180
     agcattattc acatactaat agcctatcct agggtgaagg tcagatgtaa gaaggttctc      6240
     gtatacccag tatcacatta ccagacaatc ctgcgactcg atgaagacat cctagcagag      6300
     tgcgaggaag acaccttttc ggtcaccgaa tgcatggaga ccacgcacag caccttctgc      6360
     gagcggtctc gacgcgaaac ctgcgcccgc tcactccatg cgggaaatac agcccaatgc      6420
     cacacgcaat ccagccacct tagggcagta atgcctatag atgacggcat agtcatcatc      6480
     aacgaggcaa cagcccgcat cagcacggac ggcggcccag aggtactcgt caaaggaaca      6540
     catcttgtta cattcgaacg atcagctatc atcaacggat cggagttcgt aaacttccgg      6600
     aaaacaatag acaagcagcc tggcgtagca agatcgccac tactgaacat cgtcggccat      6660
     gacccggcac tgagcatgcc tctgctacac cgcatgaaca acgacaacct gcgctttatc      6720
     caagggttca aagacgaggt tgatgccgcg ggttccccca aactttggtt cgtggctgga      6780
     gtagtcctta acgttggtct gattggttcg ctcatccttt ttctggcact aaggagaagg      6840
     cgagcttccg ctgagataca acataccatc gataaactta atataaccga ggacggtcaa      6900
     aatcttaggg ggggggtagt taacaactaa gttgccacat ataaacaatg ctgacgcgcc      6960
     ccaacggagt tcagcgctct gcgctgcgaa cggtcagcaa cagcaattgg acacccctta      7020
     tccggggtac caagctgtgt tgcataaatg ctgagtcggc ttgccgacca tgggtttatg      7080
     gcgtgatgca ttgaagctag ggtagatcca catttttcat attcttttgt atttagttct      7140
     aagcttgcac tttaagaata aagaccagct actccggcac ttggccgtaa aacaccactt      7200
     gttttaatta aacattctcg ttgagccaaa aggccatcga aagaccacgg gggcaaagtc      7260
     acgccctcca tcctaatctt cctaagacgt cttcgcccag ccaaaggaga cgacacgcat      7320
     aacacctata caacggagtc acctataaga gaggaccacc ggacgatagg atttattaat      7380
     tggcgcccaa cgtttattac ggacctagag tatcttaaca gggtagttaa gagaggaaaa      7440
     tatgtaagtt caatgagtga atttaattcg gcagtcttcg attattaaat aaataaaaaa      7500
     tagaaagcta acaatt                                                      7516
//
ID   Ginger1-1_AP repbase;    DNA;    INV; 5197 BP.
XX
AC   .
XX
DT   03-FEB-2010 (Rel. 15.01, Created)
DT   03-FEB-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Ginger1 DNA transposon from Acyrthosiphon pisum.
XX
KW   Ginger1; DNA transposon; Transposable Element; integrase; Ginger;
KW   Ginger1-1_AP.
XX
NM   Ginger1-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5197
RA   Bao W., Kapitonov V.V. and Jurka J.;
RT   "Ginger DNA transposons in eukaryotes and their evolutionary
RT   relationships with long terminal repeat retrotransposons.";
RL   Mobile DNA 1, 3-3 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   The 5'-end and 3'-end are not identified. Contains 4 introns.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(37..528,768..1106,1273..1507,2523..2738,
FT                 2820..2980,2984..3133,4552..4833)
FT                 /product="Ginger1-1_AP_1p"
FT                 /translation="FKLTIPSLFNQFLFSLVPEIINKTKYEHVNLTAVLNY
FT                 IQGKGYPSYIITKNEKANIRRQCKFFTIQCDSLVHKKKLAKVIFDAEERKR
FT                 IIEMVHDGSDQSLQSSALSSHRGRDATQRVLQKRFYWPNMTVDVKNYVREC
FT                 VICQKVNPSSLKFVPELKSVHVPKKVFKQIGVDLITLPEVNNLRYVVVVVC
FT                 YFSKWCEAKALMDKTAESVAKFLYDDICRHGCPEIQISDQGREFVNKLSDE
FT                 LFRLTGTQQRVTSPYHPQANGLVERLNRTLKTSLLKVFKWPDILQGILFAY
FT                 RTTVHCSTKYSPFFMLYQREPIIPIDVEVTNNTQNELFEDRELSYDFDETT
FT                 FSKTVQTMLDLRRVVESKAIQNINEAQLRQRESYAKRHLKADTKFKPGDKV
FT                 LLKNLRRNDRKGGWSLMPWIGPFTIESISDKNTYISQDPTDDEVIVSDENV
FT                 ITVKKSAFRPVSKLWMANKCLELNVPITQKHQCVAKSYKRLSKPKQTIDVI
FT                 GDGNCWFRCISVWLTNSEDYHELIRSCVYKVFMFIFFTEDSRVNSFVGDIE
FT                 KYLEINPVNISGTWVTEAEIFANSLLLKTSIYIYSDYHCLWQLFGKDGSYK
FT                 DGTNPNENCLYISHVNRNHYQVIIEIE"
XX
SQ   Sequence 5197 BP; 1903 A; 655 C; 732 G; 1857 T; 50 other;
     aattacacaa tattaatata tttttattaa ataacattca aattaacaat tccatcatta        60
     tttaatcaat ttttgttttc attagttcct gaaataatta ataagacaaa atatgaacac       120
     gtcaatttga ctgccgtatt aaactatatc caaggaaaag gatatccttc gtatattata       180
     acaaagaatg aaaaagcaaa tatcagacgc caatgcaaat tctttacgat tcaatgtgat       240
     tctcttgtac ataaaaaaaa gttggcaaaa gttatttttg atgcagagga gagaaaaaga       300
     ataatagaaa tggtgcacga cggatctgac caatcattgc agtcatcggc attatccagc       360
     catcgtggga gggatgccac acaacgggta ttgcaaaaaa gattttactg gccaaatatg       420
     acggttgatg taaagaatta tgtcagagaa tgtgttatat gccaaaaagt caacccatcg       480
     tcattaaaat ttgtgcctga acttaaatca gtccatgtac ccaaaaaggt agatatcttt       540
     ttttcagtaa tttatataca atttattata atatgtacaa tgtactatgt aggtatatga       600
     tattataata gttttaggct tagtatcgat tttggaaata taatttttgt tatcttcacg       660
     atattgtcaa ttatatttaa aaaaaatcta taatgttgca taaattgtta ttttcattta       720
     aaatatcgtt aaaaataaat aagtactcac atagctgttt gtaataggtc tttaagcaaa       780
     ttggtgttga tttgattacc ttaccagaag taaacaattt gcgctatgta gtagttgtag       840
     tttgttactt cagcaaatgg tgtgaagcaa aggcgttgat ggacaagacc gctgaatctg       900
     tagctaaatt cttgtatgat gacatttgta gacacggatg tccagaaatt caaatcagtg       960
     atcaaggccg tgaatttgta aataaacttt ctgatgagct attcagatta actggtacac      1020
     agcaacgtgt gacatcacca tatcacccgc aagctaatgg tcttgtggaa aggctcaata      1080
     gaactttaaa aactagtttg ttaaaggtaa tatttgactt tacacctacc tatattactt      1140
     tttttttagg tttttatgac tgtaaattgt tttattatat tgtaagtttg tttttattat      1200
     atacctacgc atcattttat tattcagtta caaatgccta ataatatttt taggtacaac      1260
     agaatgatgt aggtatttaa atggcctgat atactacaag gcatcctgtt tgcatacaga      1320
     acaacagtac actgttcaac caaatactct ccgtttttca tgttatatca acgagagccg      1380
     attattccaa ttgatgttga agtcaccaat aacactcaaa acgaattatt cgaagatcgt      1440
     gaattaagtt atgattttga tgaaactacg ttttcaaaaa ctgttcaaac gatgttggac      1500
     ttaagaagta aataaaatag tcctatatca tattatatga gtataatcta taaaagtatt      1560
     tagtaaatta taacactcat cattgttgta actatttaat ttattattta gtgcttattc      1620
     atttttacat agtttaaagt taaactgttc aatatttttg caaaacattt taatttaatt      1680
     atttgaaatt ttaccttttc aatatttgta acataatatg ttattaattt cataataatt      1740
     cattcctgaa tttaatagtc catatgagtt ttctaacgag atggtatgtt gtctttttct      1800
     ttctgtcaaa aggtctgaaa ttaaaaataa aaatagatca accattcaca ttggtagtgg      1860
     tttctgatta caaattgtac ctaggtagtt taaacatgtt gaaatttcca agaattttca      1920
     taatccaaaa aattatgttt tttttttatt tatgtcaaaa atatttctgg acctgataaa      1980
     aaaatttaca aaatttaatt caaaaatctt ccccttaaat tatttttgct gcaatattaa      2040
     acataaaaaa taaattcaca attttttatt aacatctgta gtcatgtatt attgaacaaa      2100
     ttagataaac ttacaaaaaa atatatcccc tttcaacatt tcgaaaaatt attaggacat      2160
     ttttatgtgc tttttatgaa ctttaaaatc aattggtttt tgcttaatta actaatagtt      2220
     gaactttgct attagagtga ccaattgctt atataggatt tatttgaata aatatatatc      2280
     aaagtagcta acgttattaa taaaacacga tttttttcat cattttatac taattttatt      2340
     taattttatt taaaatattt tttacttgtt taatattatg tatatacatt gcactatgtt      2400
     acaatcaatt gcaaaaatgt tatgtattat aataaagtaa cgtttactta ttgctactta      2460
     aagcaggtta atatgataat aacagtagat agataaaaaa aaattatttc ttgttttttc      2520
     aggagttgta gaaagtaagg caatacaaaa cataaatgag gctcaactta ggcaacgaga      2580
     gtcatatgca aaacggcatt tgaaagcaga tacaaaattc aagccgggtg ataaggttct      2640
     attgaaaaat ttaagaagaa atgataggaa aggtggatgg tctttaatgc catggatagg      2700
     accttttaca attgagtcaa tctccgacaa aaacacatgt gtgttaagaa gaggagataa      2760
     actaattaaa actcatcagc atttaaaaaa cataaaaaag ttttttgaac ggacagaaga      2820
     catttctcag gatccaactg acgacgaagt aatcgtatct gatgaaaatg tgataactgt      2880
     aaaaaaatca gctttcagac cggttagcaa attatggatg gctaataaat gcttagaatt      2940
     gaatgtgcca ataacacaaa aacatcaatg tgtagcaaag tagagttaca aacgtctgtc      3000
     caaaccaaaa caaacaatcg acgtcatcgg agacggaaat tgttggtttc ggtgcatctc      3060
     tgtttggctg acaaattccg aagactatca cgaattaatt agatcctgtg tatataaggt      3120
     atttatgttt attgttatct attaaattta aattagtaat tatatatttg atacttaata      3180
     aaaaaaaagc tggtaagtgg atgtcgctct actgtaccta ggtacctaca ttagggggtg      3240
     ggatggacct cagtcataga gtacctaggt cactataatg tgtttgttaa atttgaatgc      3300
     aacgataggt atcatctatg gtatcattgt ataccaaaaa cgattctgaa cggagatgat      3360
     ttgtcagtct aggatatatt atatttaaat attgttatta ttttatttta acgagtgaat      3420
     tttgatttcg tgaaaattta aacacttgta aaaatttttt aattgaataa tcatcaattt      3480
     tttttatcat tattctaagc tcaacttatg gaaaaaaaat taaaataatc gaatatttca      3540
     aatgcctata gatagaaata tcttgaaaat aaaattatta atgaaaatgc caatctaaaa      3600
     aattggtaga agtttcaaat tcctacgact tatgcttttt gaataataac aaatatcgaa      3660
     aatcattttt cgatacatcg ttattttacg caattttgta aaaatttaaa tttcagacgt      3720
     tcataaattt tttttctaaa atcacgatcg agtttttttt aaagttcctt nnnnnnnnnn      3780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn taccgatttt tgattttttt      3840
     ttaactacac taagaacaac tcataaggaa ccttgtatta aattttcaaa attttttgga      3900
     gagccaaatt ttttttattc atatttcaaa aaaaaactta aaaaattcga aaaattaaat      3960
     tgtctataaa tagctcaaaa aaagtcaaaa tctttgaacc ctgtatagat aacgctaata      4020
     taaacatttg gtgaaaattt cgagtgttta cagtagttag ttagtgagtt acagtaaaat      4080
     aaaattttta tttttgttga aaattggttt tccgtaaaaa ttcccatttt tttgttactt      4140
     ttttagggtt tttcccgacg cttttaaaag gtattaggaa tttcaaaaaa tgacctcaat      4200
     gcaccaacta gattcacttt cctttcagaa acagtgctat ttttgaaaat tgaagcatta      4260
     ttactattcc aaatcgtgat gacagacaca aaaaaaaaaa aaacacacat cattgtaaaa      4320
     tcaatacatt cctcactccg ttcagaatct aaaacaagga tctttattaa tattattttg      4380
     ttttaaatag aattatgatt tatcaacatt ttcatgaaat ataatgatat taaatgtctc      4440
     acagtaaaat attttttatt tgaaaattaa tgaattaaac taatctataa tatactaaaa      4500
     aaataaatat tattattatt ttaatattaa ttattttaca ttttttaaca gttttttaca      4560
     gaagacagtc gagttaacag ttttgttggt gatatcgaaa aatatttaga aataaaccct      4620
     gtaaatatta gtggcacatg ggtcacagaa gcagagatat ttgctaattc attgttgttg      4680
     aaaacatcga tttatatata ttccgactac cattgtttat ggcaactttt tgggaaagat      4740
     ggttcgtata aagatgggac aaatccaaat gaaaattgcc tgtatatatc acacgtgaac      4800
     agaaatcact accaagtcat tattgaaata gagtgaagaa aacatatatt atatttaaat      4860
     tacgcgacga tatattttta attataatta agtacaatct tattgtttat aaattaatat      4920
     tatttaagtt caaagttatt ttatttatgt atttgttaag aattcaagag atatatgtaa      4980
     cataatattc gtgacgattt taaaatgtga taataagaat aaatatacaa taaaatttaa      5040
     aaaagcggat aagtggatgt cgctctgctg tacagttgtt tacaagtggg ttactgtaat      5100
     ggattaaatt tgaatttaat gatataatat tattgtatat ttgtatacga aaaacgattc      5160
     tgatcggaga cgaattttca gtctgggata ttttata                               5197
//
ID   Ginger1-2_AP repbase;    DNA;    INV; 4441 BP.
XX
AC   .
XX
DT   03-FEB-2010 (Rel. 15.01, Created)
DT   03-FEB-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Ginger1 DNA transposon from Acyrthosiphon pisum.
XX
KW   Ginger1; DNA transposon; Transposable Element; integrase; Ginger;
KW   Ginger1-2_AP.
XX
NM   Ginger1-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4441
RA   Bao W., Kapitonov V.V. and Jurka J.;
RT   "Ginger DNA transposons in eukaryotes and their evolutionary
RT   relationships with long terminal repeat retrotransposons.";
RL   Mobile DNA 1, 3-3 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   The sequence is not complete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(478..1203,1203..1685,1689..1823,1826..2101,
FT                 3299..3436,3440..3670)
FT                 /product="Ginger1-2_AP_1p"
FT                 /translation="MFRPREMCLTAAVEADEPQQQKNTHVNLKWVMDYFEY
FT                 KVYPASIPDKGSRANFRRCCRPFILKDGVLYYQKTMAKVIITPEERTQIIK
FT                 LVHDGADSSLEASALSSHHGRDATQNLLKKRYFWPSMLNDVREYIKQCDAC
FT                 QKANPATLKVIPDLQSVSVPKQVFKQIGVDIMTLPVVDDMKYVVVAIDYFS
FT                 KWSEARALPDKSSDSVARFLYDDIICRHGCPLIHITDQGGEFLNKLISELF
FT                 SLTGTKQRVTSAYHPQANGLVEHQNRTIKNCFLKVLQDNSNKWPYILQGVL
FT                 FAPRTTQHTSTNFSPFQVLYQREPILLVDICNLKLIDEDTIISEDLGIISD
FT                 DDVFDKVAFNKTFEKMLNMRSIMEDEVYTNIEKAQVRQRVSYNKRHKTDNA
FT                 FNVNDKVLLNLKRDDRKGGWSALPWKPKIGYYIIDSINSNKTCVLMYKGKV
FT                 MKQHHLSNLKHYFDKNIQLADDIEDDVVEIPGNAYQNVVLRYFNPVSYVWQ
FT                 KMQCRYFNLTVEHFHKLSSVPKFLNKPSIIIHIIGDGNCFYRVLTCITTGF
FT                 IFHSTTYILQNILYQIKIYCIMILLIIQKNKINYLIKVLIITYISEIWATE
FT                 VELLAAALLMNTTIVVYTFSNKQDWQVFHKSGRIPDTFNMHEKCIYLVNSN
FT                 SNHFDVVTSVEDNK"
XX
SQ   Sequence 4441 BP; 1645 A; 613 C; 633 G; 1550 T; 0 other;
     aatattaaat tgttaaatta acattttttc aatctttgaa ttcaacgaat accctataat        60
     atattatttc atacattata cttattaaat aatgaaaata aattactaat tataagtcat       120
     tacttatggt aaaatatatt gatttgcctg ataaataacc taggaaatgt agaccctgaa       180
     aacaagaacc ccgttaaaaa ttaccctacc cataataaaa atgactttca tagtgtactt       240
     aggtacctaa taattagagc gtggatattt ataatttatg cactagaaaa ttgtgttaaa       300
     gtggcttgca caatgaacta tagtttattt atttattaat ataacaatat tgtacaccat       360
     aataatatta catcaaaatt aataattaac accttcccaa taatcagata ttcagataga       420
     taggtatgta tgtatagtaa tatttattat taatgtcaat tcacttatag ataaaatatg       480
     tttcgaccac gggaaatgtg cttgacagct gcagttgagg ctgatgaacc ccaacaacag       540
     aaaaacacgc atgtaaattt aaaatgggtc atggattact ttgagtataa agtttatcca       600
     gctagtattc ctgataaagg tagccgagca aacttcagga gatgttgtcg accattcata       660
     ttaaaagatg gagttctgta ctaccaaaag actatggcca aagtgataat tacgccagaa       720
     gaacgaacac aaatcattaa attggttcat gatggtgctg atagttcttt ggaagcatcg       780
     gctttgtctt cacatcatgg tcgcgacgcc acacaaaatc ttttgaaaaa gcgatacttt       840
     tggccctcaa tgttgaacga tgtgagagaa tacatcaagc agtgtgatgc ctgccaaaaa       900
     gcaaatcctg cgacattgaa agttattcct gacctacaat cggtttcagt acctaagcaa       960
     gtgttcaaac aaattggtgt tgatattatg acacttccgg tagtcgatga catgaaatat      1020
     gttgtagtag caatcgatta tttttcaaaa tggtctgaag caagagcact tcctgataaa      1080
     agttcagatt cagttgcccg cttcctgtat gatgacataa tctgcagaca tggctgtcct      1140
     ttaattcaca ttactgatca aggaggagaa tttctgaaca aactcatatc agaattgttt      1200
     tcttaactgg taccaagcag agagtgactt cagcgtatca tcctcaggcg aatggtttag      1260
     tcgaacacca gaacagaaca ataaaaaact gcttcctcaa agttctgcaa gataatagta      1320
     ataagtggcc ttatattttg caaggtgtac tatttgcacc tcgtacaact caacatactt      1380
     cgacaaattt ttctcctttc caagttttat atcaaagaga acccatattg cttgttgata      1440
     tatgtaattt aaaattgatc gatgaagaca cgataatatc tgaggatctt ggtattatat      1500
     ccgatgatga cgtattcgat aaagttgctt tcaataaaac atttgaaaaa atgttaaata      1560
     tgagaagtat aatggaagat gaagtctaca caaacattga aaaagctcaa gtccggcaac      1620
     gagtttcata taacaaacgt cataaaactg ataatgcgtt taatgtgaat gacaaggttt      1680
     tactttgaaa cctcaagaga gatgaccgca aaggaggttg gagtgcactt ccttggaaac      1740
     caaaaattgg ttattacatt attgattcga taaattcaaa taagacctgc gtcttaatgt      1800
     ataaaggcaa agttatgaag caaggcatca cttgtcaaat ttaaaacatt attttgataa      1860
     aaatatacaa cttgccgatg atattgaaga cgatgttgta gaaattcctg gaaatgcata      1920
     tcaaaatgtt gttttgagat attttaatcc ggtttcgtac gtgtggcaaa agatgcaatg      1980
     tagatacttc aatttgacag ttgagcattt tcataagcta tcttcagtgc ctaagttttt      2040
     gaataagccg tcaataataa tacatataat tggcgacggt aattgcttct atagagtctt      2100
     aatcgtggtg gattacaggt gataaagatt ctcatacaat aattaggaaa gatctgaaaa      2160
     aggtacctat ttataattat ttattataca atttcattgg caccataatt tgtatttttg      2220
     aatttttttt tttttttttg atagtttgta gcaaatgatg atcaggttat taaatttatt      2280
     ggtggtcaaa ctcagatgga agactattta ataaccaaca attgtaaaca caatttaata      2340
     tttttggatg attattcatt atatatttag gtatattgct ataatattag ctaatatgtg      2400
     tcacctgtgt tatatttaaa taattataat tatatttcaa taagtactat gtttcagtaa      2460
     acaataattt tactataacc tatataattt ttttatgtta ttattaacat acacattact      2520
     ttgcactccc ccccccccca tttatctatt ttatccaatt tttaatccac cctcagttat      2580
     gtttccaaag agaataaagt gaaactagga tattttacta tctgcagaaa aaaatactac      2640
     aagatactgg aaatttatat acccgatgta acaggaagaa ctgaccaaaa aaaaaaaaaa      2700
     atgatgctat attcaacaaa tttttttaac attatatgat cagaaaataa tttaaaaaat      2760
     atactcgtgt cagcaaattc ccaaaaaaaa tattttgaaa aaagttatta tgttccaaat      2820
     taatttaatc aaaaaaatat tgatatttta aaaaattcta aaaaataaac tacttgactt      2880
     agacaaatgt ttttaccata aaatttttac ttataatcag attcacaaat tggctatttt      2940
     taatttatcc gaaaaaattt taatcaaatt ttaatttttt attttcagca ttaaaaaata      3000
     aaaataattt ttttttaatt atccgtgtag cacaagtggg gtttaaatat agcttaaaat      3060
     caaattttgt atgtggtcta gggaaatgtg caagaatgga caactgatta ggacttgcaa      3120
     attttaggtc tgatttgatc tggtccaaat ttgtgctaaa tattggtata ggaatgaatt      3180
     ccaacatgaa tataatatta tgaatcataa tacatgctaa ttgcataaaa aaatgtttga      3240
     gtatgtgtgt ggtagttggg gggagggcag agagataata tatgctatta ttttatttac      3300
     ttgtattaca actggtttta tatttcattc aactacctac atcctacaaa acattttata      3360
     ccaaattaaa atatattgta ttatgatatt attaattatt caaaagaata aaattaatta      3420
     tttgataaaa gtattataaa taattaccta tatttcagag atttgggcta ctgaagttga      3480
     gttattagct gcagctcttt tgatgaacac aactatagtg gtatatactt tttcaaacaa      3540
     acaggactgg caagtgttcc ataaatctgg tagaattcca gacacattta atatgcatga      3600
     gaaatgtata tatttagtca actcgaatag taaccatttt gatgttgtta cttctgtaga      3660
     agataacaaa taaaaactat aatatatcat taataggtaa ttaatagcaa caaaatatta      3720
     ataattaata gttataaaat attatttaat atgtatcatc tcatttatta taattttata      3780
     cttgaaaaat gacaagtact aagcagtcta tattgttaat ttttatattc gttattttaa      3840
     caaattagat tagattattt tacacattaa aatattcaac tagttaagtt acaaagttaa      3900
     tatgaattaa aactaactag ttaatttaga aagttaccaa aaaaggaact ttctaactta      3960
     cctttaactt accaactata gttagtgcct agctttgata aaatgttata ttaatagtta      4020
     aaattaataa ttataaaaca gcttttacta ttagtaccta ctacatattt taatatttgc      4080
     agataatctt tttctaattt tttacatcat ggttatatgt gggttaatat tatgtgtttt      4140
     ttgtttgcac tttagacaat ttactttttc catttattaa aaattaattt tatacctacc      4200
     aaataattta gcctacatta tctaaatatg tatgggatga tacaaaaatc aaaaactggg      4260
     ttcagaatag ataatttaat ctaatgcatt ttctcaaata tttgagcata atgtgagtac      4320
     caaaaaataa aatacctaac tcgggatact atgtacaaaa aaaagtaatc atatttgcgt      4380
     gtgtgctttc attatttata attattacct attattacat atacctaaat taattaaaat      4440
     a                                                                      4441
//
ID   Ginger2-1_AP repbase;    DNA;    INV; 2885 BP.
XX
AC   .
XX
DT   03-FEB-2010 (Rel. 15.01, Created)
DT   03-FEB-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Ginger2 DNA transposon from Acyrthosiphon pisum.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; integrase;
KW   Ginger; Ginger2; Ginger2-1_AP.
XX
NM   Ginger2-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2885
RA   Bao W., Kapitonov V.V. and Jurka J.;
RT   "Ginger DNA transposons in eukaryotes and their evolutionary
RT   relationships with long terminal repeat retrotransposons.";
RL   Mobile DNA 1, 3-3 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(790..1644,2159..2644)
FT                 /product="Ginger2-1_AP_1p"
FT                 /translation="MSLNQLFVPLKPGETKIIYFVKNEDLFDIIHDAHIKT
FT                 GHGGRTRVISELQTKYKNITYKSVTLFLSLCVQCQRKQKVPRKGIVVKPII
FT                 SRELNSRCQVDLVDMQTCKDGEYKFILNYHYHLTKFIQLRPLKSKTAEEVA
FT                 LMLLPIFLTFGAPNILHSDNGREFSNKIIMDLCSRWEGVKIVHGKPRHSQC
FT                 QGSIERANQDFQNILRAMMHDKNTTKWSEALPFVQFAKNTAYHQGIKQTPY
FT                 EAMFGNVAKRGLATSSLPREQIKDIETEEQLEQIIQSIGEYLQVIKKKKKN
FT                 MIQNRAAARMGLELQAERMLRSSRQKFTPAKPGDTVRIRVPDVDRGRMDPQ
FT                 NILAVVVAVDNEFYTLGTKEGVINQLYTRNQFAVCKEQLLSPEEVATDQSV
FT                 SLRKASTSISKTGGQGYMKCNCKAKCVSKKCSYRSSGILCNSKCHNSLSCC
FT                 NK"
XX
SQ   Sequence 2885 BP; 1063 A; 446 C; 507 G; 869 T; 0 other;
     tgttaaggtg aatgacgaca tttggtgaat gttgacattc accggtgaat gttgacattc        60
     actgctgttt ttggtgaatg tcaacatttt gaatgaatat taaaaatttg ccaacagtca       120
     ccggtgaatg tcaacattcg caacgattat cggtgagtgt tgacattcac aattgagttt       180
     tggtgaatgt tagacatttt tagttaaaat tggagtatag acgttatcgt gtcatacgtc       240
     aagatagtaa atgtttatag atatgatatt gttcacacaa tatttaatcg aacggtgttt       300
     aatgatctat ataatattat catagatatt taggcattta acgttacggt atctgtctgt       360
     ctgcctgtac ccactaccta tctctctctc tctcacacac gctaagattt tgcttaatcg       420
     caaaattggc gatacggcag tcatcgtacc taatttagta gtgatgaaaa atacgtttat       480
     atcgatcagt gtcgacgtat ttcatttacc ttgcttacac gaacgaaaag gtagactgtt       540
     gtgactgatt gaatttgtga tacgttcgag ttacctacta attgttcacg tgtataatgg       600
     agaacatatg agaagttttt tacgaaaaat ttaacgctat attaagtaca aaaagagaag       660
     acaacaattt ttatttgagt acttaaaata tatgacaaat gtgttgaaga cgttctcaag       720
     tttaagggga aagaaagtaa gcaacgcgcc gtgtgcaagt tattgaaaat atatgatgtc       780
     gttaaaataa tgtctctcaa ccaacttttt gttccattga aacctggtga aacaaaaata       840
     atttacttcg tgaaaaatga agatttattc gatattatcc atgatgccca tatcaaaaca       900
     ggccacggag gacgaacccg tgtaattagt gaattacaaa caaaatataa aaatataaca       960
     tataaatcag ttacattatt tttgagcttg tgtgttcaat gtcaaaggaa acaaaaagtc      1020
     ccgagaaaag ggatcgtcgt aaagcccatt ataagtcgtg aactcaactc tcgatgccaa      1080
     gttgatttag tcgatatgca aacgtgtaaa gatggtgagt acaaatttat tctcaattat      1140
     cattaccatc tcactaaatt tatacagctt agaccattga agagcaagac agcagaggaa      1200
     gtagccctca tgttgctgcc aattttcctc acttttggtg caccaaatat tctgcattca      1260
     gataatggga gagagttttc caacaaaatt attatggatt tgtgctcaag atgggagggt      1320
     gtaaaaattg ttcacggtaa accccgtcat agtcaatgtc aaggttctat cgaaagagcc      1380
     aatcaggatt ttcaaaatat actcagggcc atgatgcatg ataagaatac aacaaaatgg      1440
     tcagaggctt tgccatttgt tcaattcgca aaaaacactg catatcatca aggaataaaa      1500
     cagacaccgt atgaggcaat gtttggtaac gttgctaaaa ggggtctggc aacaagttcg      1560
     ttgccacgag agcagataaa agacattgag accgaagagc agcttgaaca aattatacag      1620
     tcaattggtg agtacctaca agtttaattt aaaaaataaa atgatataga taatgaattt      1680
     tattattatt attagatgat gataacactg agcaagtgga acaacatgac aatcatatac      1740
     aacagcttga acaaatttta cagtcattgg tgagtaccta caagttaaat taaaaaaata      1800
     aaatgataat atagataatg aatttaatta ttattattag atgatgataa cactgagcaa      1860
     gtaggacaac atgacaatga tatacaacca gaaagtgtat taggtaaact gtatttataa      1920
     taaataaata attaagtaca ataataataa ttaaatatat tttatcataa tatctggctg      1980
     agctatttaa aatagaaaaa aatatcttat aaacagtaaa atgataaatt atattcaatt      2040
     ctattcagaa aaatctgtaa ataaataatt tatcaattta ttttccagct aatgacatcc      2100
     aatataataa cactgagcag gtggaacata attttgtgca aagtgaagta gataatgaat      2160
     taaaaaaaaa aaaaaaaaca tgattcaaaa tagagcagca gcaagaatgg gacttgaatt      2220
     acaagctgaa agaatgctac gttcatcaag acaaaagttt actccagcca aacccggtga      2280
     tactgttcgt atccgagtcc ctgatgttga ccgaggacgt atggatccac agaacatatt      2340
     ggcagttgtc gtagctgtcg ataatgaatt ttacacacta ggcacaaaag aaggagtaat      2400
     aaatcaatta tacacccgta atcaatttgc tgtatgtaaa gaacaactat tgtctcctga      2460
     agaagttgct acagaccaat ccgtgtcctt aaggaaagct tccacttcaa tttctaaaac      2520
     aggtggacag gggtacatga aatgcaattg taaggcaaag tgtgtatcga agaagtgtag      2580
     ttatagatcc tcaggcattt tatgtaactc aaaatgtcat aacagtttat cttgttgcaa      2640
     caaataattt tataatataa aataaaataa cttatggtta attaatttgt aaaaattatt      2700
     ttatcactag gtattcatct ttttttacaa catgttaaca ttcaccaaaa acagatggtg      2760
     catgtcaaca gtcaccagtg aatgtctaca tctaagaaga aattgacatt caccagaaat      2820
     ttcggtgaat gtgacattca ccggtgaatg tcaacattca ccaaatgtcg tcattcacct      2880
     taaca                                                                  2885
//
ID   Ginger2-1_BTa repbase;    DNA;    INV; 1621 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Ginger2-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1621
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 515-515 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(424..957,831..1583)
FT                 /product="Ginger2-1_BTa_1p"
FT                 /translation="MVSLHSQSQGSVERANRDVGEMLGAWMKDQNSEDSVA
FT                 GLKFVQLSKNRAFHLGIKMSPYEAMFGCPARVGLKSTSLPNELLDEVETEE
FT                 DLERLLDAEPASEAATSEATPTSEATPTSEAAPTSEAAPTSETAPTSETQL
FT                 LLLKQLLLLKQLLLLNHTSTTYLEKGVLLYKTLRFRPIKNTAPTSETAPTS
FT                 ETAPTSEPYINNILRKRRVALQNLEVQANKMKKQSDAKFSPVAVGKTVLVP
FT                 IPAVDRSRTDSRNVTAVVLEEKDGFYKLGTTEGVIRCLYTRSQFTPCSSDL
FT                 VPLESVPSTEKSLRQIVSSASVSGGQGMQKCDCRQKCTTKRCSCRARNVLC
FT                 NSRCHNSQSCTNKYLGESLFSSHLFFILTVPDNPWASLSVPGHGCLTLSIP
FT                 IFARPFKALLGHRRQCPGIDDDAQASWAPSSVTGH"
XX
SQ   Sequence 1621 BP; 393 A; 421 C; 406 G; 400 T; 1 other;
     tgttacgggc aacgtccggg tctcgggcaa agtcagtctt tgcccgggca ttgatgacgg        60
     tgcccaactc gcctgggcat cgtcgtcatt gaccgggcat tgacgacggt gcccgcgcga       120
     gttgggcatc gtcttccaca atgtaattga ggcatttaat gcccgggcat tgaccgtcct       180
     tggcgggcag cggcaacgat gcccctgcac cattgggcaa cgttgccgcg ggcaacgggc       240
     cacggtaggc gaccgaactt gtcactgctt gaggagaccg aatggacctt gtggcaacga       300
     atctagtgga tgttttctgt cttttaggag cacctttaat tttacaatct gacaacggcc       360
     gtgagttcgt caattccatt ataaacaatt tgaaggatat gtggcccact ttgaaaatag       420
     tgcatggtaa gcctccacag ccagtcgcaa ggctctgtgg agcgggctaa ccgcgatgtg       480
     ggggaaatgc tgggagcctg gatgaaagac cagaattctg aagactcggt tgcgggtctc       540
     aagttcgttc agctaagtaa aaacagagcc tttcatcttg gaatcaaaat gtctccttat       600
     gaagcgatgt ttggctgccc tgcaagagtg ggactgaaat ctacttcctt gcccaacgag       660
     ttgttggatg aagtcgaaac agaggaggat ctggagcgtt tgcttgatgc tgaaccagct       720
     tctgaagcag caacttctga agcaactcct acttctgaag caactcctac ttctgaagca       780
     gctcctactt ctgaagcagc tcctacttct gaaacagctc ctacttctga aacacagctc       840
     ctacttctga aacagctcct acttctgaaa cagctcctac ttctgaacca tacatcaaca       900
     acatacttag aaaaaggcgt gttgctctac aaaaccttga ggttcaggcc aataaaatga       960
     agaagcaatc tgatgccaaa ttcagtcctg ttgccgtagg gaaaacagtc cttgtgccca      1020
     ttcccgctgt agatcgttcc cgcaccgact cccgaaatgt tacggcagtg gtattggagg      1080
     aaaaggacgg attttataag ttaggaacaa cggaaggcgt catccgctgt ttgtacacta      1140
     ggtcccagtt cacgccgtgc tcatctgacc tcgtaccatt ggagtctgtt cctagcacgg      1200
     agaaaagttt gcgtcaaatc gtatcttctg catccgtatc cggcgggcaa gggatgcaga      1260
     aatgtgactg ccgccaaaaa tgcacaacaa aacggtgttc mtgtcgagcg cgaaatgtgc      1320
     tgtgcaattc acgctgtcac aactcccaat cctgcactaa caaataccta ggtgagtcat      1380
     tattttcatc tcacttattt ttcattttga cggtgcccga taacccttgg gcatcgttgt      1440
     cagtgcccgg gcatggttgc cttactctct cgatcccaat ctttgcccga ccgtttaaag      1500
     cacttctcgg gcaccgtcgt caatgtccgg gcattgacga cgatgcccag gcgagttggg      1560
     caccgtcgtc agtgaccggg cattgacgac ggtgcccgag acccggacgt tgcccgtaac      1620
     a                                                                      1621
//
ID   Ginger2-1_LMi repbase;    DNA;    INV; 4011 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Ginger2-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4011
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2980-2980 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2151..3722
FT                 /product="Ginger2-1_LMi_1p"
FT                 /translation="MLLKLTEKKELIAPVTGDNSAILYYVXTEELFEILHE
FT                 THLKIGHGGRTRMEKELHLKYKNVTKEVITLYLRLCKPCQIKLSNPKKGLV
FT                 SRPLIFKEFNSRCQVDLIDMQSSPDGEYKFILNYQDHLTKFILLRPLKSKR
FT                 AEEVAYHLLDIFTTIGAPSVLQSDNGREFSNKVINELSNMWPELKLVHGKP
FT                 RHSQSQGSIERANQDVQNMLMTWMQTNNSAHWAESLRFIQFMKNRSFHHGI
FT                 QQSPYEAMFGCKAKVGLSTSHLPKEIIDNIVTEEDLEKVEREMDDAINLGT
FT                 TPNNETDTVEIEPSGSQDQLYDNNKPKIYCVVCEEECGAAHCCTFCGKSVH
FT                 AICGRSNEADEGYGGKVICKLCYNKQEIRKKREGAHDNLQAQGAKMLKNSD
FT                 AKFAPAKVGDNVRIRIQDVDRGRGDPRSVLAVVMNVEGTFYKLGTEHGVLK
FT                 QLYSRNEFSILPEKLITLESVPKEEKSLRTISSLQSLTSGQGYNRCNCSTK
FT                 CATNRCKCRNKKVLCNSKCHKSLTCCNK"
XX
SQ   Sequence 4011 BP; 1267 A; 755 C; 827 G; 1161 T; 1 other;
     tgttacagcc aaagcccgaa gagcggccag atcgcgaact ggccggccac ttcgcacttt        60
     ggccgggtgg attggccaga gtccgattac ttgaatgaag cgacgcatat ccgactttgg       120
     ccagccagtt cgcgacttgg ccggaggttc ctggccagaa cgcgatgtga ctgcacacat       180
     gtcggggaat ccccgtctaa atcgcactgg gtgctgtgat gtggcaacaa tgtacggtag       240
     tcaccatatg tctcactctc agtgttaact gtgccgtgta cgtggtagct gctgcctttc       300
     ggagaaggtc gtctttcttg tttttcttcc tcacaaattg gattaatttg tgagtaccgt       360
     tacgttttgt ggcatttttc tttcccgtat tagtgcattt tcagcagatt ttttgtttgt       420
     caatgttttt tattgttatt tgcccccact ttgccataaa tcagtaatcg aacataccgg       480
     tattaattat ttgcttctaa ctaggagacc acatgggtat cggattttag aatcttttga       540
     tatttatggt acgtgaagtt cagaactcaa ataacaatca gccaaagcca ttcgacgcaa       600
     ttctcaaaaa ttctcgagaa aattgacttt gaagttcttc aagtacatgc aagtactaat       660
     aattaaaagt tcaatagtat gtgtatgtct agctttagtg gtagcgttgt ggccttacac       720
     gcaagaggta gggggttcga atcccgccgt ggtaggtttt ttttcgttgt gttcgaatac       780
     ttacacagtt ttaatatcta atcgtaattt ttacgaaaaa tgcacgtatt tttgtttgtt       840
     agaaattttc tactatgtat aaaaggttgt tagtaatgat ggtttcactc aagaaaatgt       900
     aacaagttac attttttacg gtattggctt cactattagt cgaagacggt tgtctttgat       960
     tgttcagtta gtgaaaagct acgacgatgc aaaactgtgc ctaccggatc gaacgaggac      1020
     gtgaaactag tgatagagaa gattctatca aacgtcattc aatcatcatc accaactgtg      1080
     ttctccaatc tttggtgaaa tgatcacata tgcgtggttc acttctaaat tgtgcaattc      1140
     aagaggaatc ttcatgaacg taaatgaagt ttgctttcca gttgacatat caaagaaaaa      1200
     ttgcgactgt aaatatgcga ccatgtgctc gatgtcgtga aaattgtttt ccatgttttt      1260
     acgacgctta tcaccctggc atgtctgaga ccacatcgaa atgatttttt tttatttttc      1320
     agtattgcta caaatatgga atttgcaatg tttcttgtgt ttcctttttt caaaatttaa      1380
     tcattatgga taacctttta taaaaaaaat ataaaattac gaataaacaa aaatacgttc      1440
     attgttcata aaattaccat taggttttaa aatggtgtaa gtattcgaaa acgaaaaaaa      1500
     aaaaaaccta tcacagcggg attcgaacca ccgactctac cgttgtgaaa ccagaacgct      1560
     accacttttt ttatgatata acaaacttta tttaataatt tatttgattt taattttatt      1620
     taataaaaca ttgtatctac aatttatgtc taccactcat ttgattgagc tacaccgaca      1680
     gatgctgcaa ttcctttagt tattggtact tacatgtact tgcaaacttc aaattgattt      1740
     tctcgagaat ttttgagagt ttttattgaa gttctgaact acacgtacca taaatatgaa      1800
     aaaaaaaaat ctaaaatccg atacccatgt ggtctccttg taagacctag gctgctccct      1860
     tgtaagggca ttcgatttca attgttcgta tcattcttcg gcaggttgac ccatggctac      1920
     gtcacacggg gacgatattc acgatgaagg tgggatactt gcagatgcgg aaacgatatt      1980
     tgatatgaaa agcaggttcc tggacacttt gcatacgctg ctgcaagaaa aagcaaataa      2040
     tagcggaata atcaccagag atagatactg ttcttttata gaggacgtta aacaagccaa      2100
     agcaaagcaa agaaaagaaa gtattcacta tcgtcgacta agaaagtacg atgttattga      2160
     agttgacgga aaagaaagaa cttattgcac cagtaacagg agacaatagt gctattttgt      2220
     attatgtcca waccgaagaa ctgttcgaaa tactgcacga aactcactta aaaataggac      2280
     atggaggtcg cacacggatg gagaaggaac tgcacttaaa gtacaaaaat gtcaccaaag      2340
     aggtcattac tttgtatctt cgcttatgca aaccgtgtca gattaaatta tctaatccaa      2400
     agaaaggttt agtttccaga cctctaatat ttaaagaatt taattcaaga tgccaggtag      2460
     atctgataga catgcaaagt agccctgatg gggagtacaa gttcatactc aattatcaag      2520
     atcacttaac taaatttata ctattacgac ccctgaaaag caaaagagca gaagaagtcg      2580
     cttaccattt gcttgacatc tttaccacta taggtgctcc aagtgtgcta cagtcagata      2640
     atggtagaga gttttcgaac aaagttataa atgagctgag taacatgtgg cctgaactga      2700
     aattggtaca tggaaaaccc agacatagcc aaagccaagg ttctatcgaa cgggccaacc      2760
     aggatgtaca gaatatgcta atgacatgga tgcagacaaa taactcagcg cattgggccg      2820
     agagtcttcg attcatccaa ttcatgaaaa accgttcttt tcatcatgga attcagcagt      2880
     ccccatacga ggcaatgttt ggctgtaaag caaaagtggg gctgagtact tcacatctgc      2940
     ctaaagaaat tattgataac atagtgacag aggaagacct tgagaaagtt gaaagagaaa      3000
     tggacgacgc tataaattta gggactactc ccaacaatga aactgacacc gtggagatcg      3060
     aaccatcggg aagtcaagat cagttatacg acaataataa gccgaaaata tactgtgtgg      3120
     tttgtgaaga agagtgtggt gcagctcatt gttgtacatt ctgcggcaaa agtgtccatg      3180
     caatatgtgg aagaagtaat gaagcagatg aaggatatgg aggaaaagtt atttgcaaac      3240
     tatgttataa caagcaagaa atcaggaaga agagggaggg agctcacgac aatttgcaag      3300
     cacaaggtgc taagatgctt aaaaattcag acgcaaaatt cgcgcctgca aaagttggag      3360
     acaatgttcg catccgtata caagatgttg acagaggtcg cggagatccc agaagcgttc      3420
     ttgccgttgt gatgaacgtc gaaggcactt tctacaagct gggaacagag catggtgttc      3480
     tgaagcaact atattccaga aacgagttct ctattctgcc cgagaaactg atcacgctgg      3540
     aatccgtgcc caaagaagaa aaatcattgc gaaccatatc gtccttacag tcactgacca      3600
     gtggccaagg atacaatcga tgcaattgct ctactaaatg cgccacaaat cgctgcaaat      3660
     gcagaaataa gaaagtattg tgtaattcca aatgtcataa aagcttaact tgttgtaata      3720
     agtgaatacc ggctgtatta aaaatattta taatgtggac ggattgtata ctttttatta      3780
     ctgagattga taaataaatt gcatacagct tgaaattata cactttcagc ccatctttat      3840
     ttatctcccg attctggccg atcggtctac gccacttcgc gaactggccg gccaaatccc      3900
     gaaatcagga aaagatcgga cattggccgg ccaattgaag gcgatattgg ccacttcgcg      3960
     acttggccgg ccagttcccg atctggccga tttcgggctt tggctgcaac a               4011
//
ID   Ginger2-1_MyPe repbase;    DNA;    INV; 2985 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element;
KW   Ginger2-1_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-2985
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1643-1643 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 4-bp TSDs, mostly TATA. 17-bp
CC   TIRs. Inserted into (TA)n microsatellites. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(454..1345,1476..1721,2100..2318,2389..2660)
FT                 /product="Ginger2-1_MyPe_1p"
FT                 /note="transposase."
FT                 /translation="MENKFRAEIDKIISSKKRDDNIFYFSSEEYNNKIQKI
FT                 KELKIGTLKKTVTNNRLIRKYDVVSIGGKEKLIKPIVDNESDVLYYVTVDE
FT                 LFEVIHTAHLAVGHGGRNRMMAVLKTKYCNVTTEAVMAYLGLCSNCQVKQS
FT                 NPKRGLVTKPILHSAFNSRAQIDLIDMQSQNYNNYRYIMNYQDHLTKFVIL
FT                 KPLKTKRAEEIALNLIDIYTIFGAPAILHSDNGREFVNSIITNLNEMWGDV
FT                 KIVHGKPRHSQTQGSIERANRDVEEILASWMADNKSKDWPMALKFVQFQKN
FT                 RALNSGIGRSPYEAMFGCTARTGLASAGIPYDEIEKLKSEEDIEELFNNSN
FT                 HSDHINAVEDDLVDVGDLDNEVNLETENELRNTKDIGKRIEKIKDQRQKSV
FT                 VCLEKQASKMLRLTNEKFSKLDVGTTVRVPIPDVDRARGSPRNLLAVIISC
FT                 EDDMYKLCTEYGVLKHKYTRAQISPCKEKFLELDEAMKKIKDREITLREAA
FT                 GHGIAGHQGFNRCNCKTGCGTKKCACNAAEMLCSSKCHGNQNCTNK*"
XX
SQ   Sequence 2985 BP; 1138 A; 377 C; 506 G; 963 T; 1 other;
     tgttacggtg aaagatgtaa acgtggtaaa agacgtcatt ccccggtaaa tgacatcatt        60
     tacctaaama ttggtaaatg ttgtaaatgc agacattccc cggttattgt cgtcaatcac       120
     cagtttagtt ggagaatgat gttcaatact tttatgtcgg tgtgaacgaa cagcgataag       180
     cgtgtaggtg ccaaataagc ttcgttagtt aaaaatatca tgacggaagt agatagataa       240
     acgaaaatcc caacaagcaa taacgtcgat aacccgagta ataatatgag ataatctatt       300
     agtttattag ttagtatcta cgggaatatt atagcgagtt gtatatgcga cgagtgtgtg       360
     ttttataata ttatttgtaa aaatttgtgt caccagtgaa caaagtgtaa taagagttag       420
     attcaattat agtgttagtt ttatttaata attatggaga acaaatttag agcagaaatc       480
     gacaaaatta ttagcagtaa aaagagagac gacaacatat tttattttag ttctgaagag       540
     tacaacaaca aaatccaaaa aataaaagaa ttaaaaattg gaacacttaa aaaaacggta       600
     acgaataata gacttatacg taaatatgat gttgtgtcaa ttgggggaaa agaaaaattg       660
     attaagccta tagttgataa tgaatctgac gttttatatt acgtcacagt agacgagttg       720
     tttgaagtca tccatacagc acatttagca gtaggtcatg gtggtagaaa taggatgatg       780
     gctgtgttaa aaacaaaata ttgtaatgtg acaacggagg cagttatggc atatttaggt       840
     ttatgcagta attgtcaagt aaaacaatca aatccgaaaa gagggcttgt gacaaaacca       900
     attttacatt ccgcatttaa ttcaagggcg caaattgatt tgattgacat gcaatctcaa       960
     aattataata attatcgcta tataatgaat tatcaagatc atttaacaaa atttgttatt      1020
     ttaaaacctt tgaagacaaa aagggccgaa gaaatcgctt taaatctaat agatatttat      1080
     acaatatttg gtgcacccgc tatactccac tcggataatg gtcgtgagtt tgtaaattct      1140
     attataacaa atttaaatga aatgtgggga gacgtcaaaa ttgtgcatgg caagcctcgt      1200
     catagccaga cccaaggatc aattgaacgc gcgaataggg acgttgaaga aattttggct      1260
     tcttggatgg ctgataataa atcaaaagac tggccaatgg cattaaaatt tgtgcaattt      1320
     caaaaaaatc gggctttgaa ctcaggtaag ctattctaaa aacaattttt ttttaataat      1380
     tttaatttta attaattaat aatttttttt tttataatat tataaatgta taatttatat      1440
     ttataatttt ataatatatt tttttgttat aataggtatt ggaagatcgc catacgaagc      1500
     gatgtttggt tgtacagcga gaacagggtt agcttcagca gggatacctt acgatgaaat      1560
     agaaaaactt aagtcagaag aggatattga agaactattt aataacagca accattcaga      1620
     tcatataaat gcagtagaag atgatttagt cgatgttgga gatcttgaca atgaagtaaa      1680
     cttggagact gaaaatgaat taagaaatac taaagacata ggtaattatt taatatttat      1740
     tatatgtaat ttggcaaaaa tacttgcata tttctgcaaa tttaatggtt gttgcgtatt      1800
     tttacaaaat ttgatttgca ttgcatatta aaccaaaagt ttaaaaacat aatgtataaa      1860
     ataataaatc attatttatt ttttattatt acttaatttg taaatttaaa aaaaaataaa      1920
     aaataaattc ttgcatattt tcatgatttt tactgcatat tatatggcat atttcgatag      1980
     tttttagtgc ataaaaatcc gagctatata aatttaataa aattgtataa taataaaatg      2040
     taaaattttt ttatttaaat ataataggtt aaaaaatagt aatcgtcatc tatttacagg      2100
     taaaagaatt gaaaaaatta aagaccaacg acaaaaatcg gttgtctgtc tcgaaaaaca      2160
     agcgtcgaaa atgttgagat tgactaacga aaaattttct aagcttgatg tcggtacaac      2220
     tgttcgtgtc ccaataccag atgtcgatag agcaagaggt tctccgcgta atttacttgc      2280
     tgttattatt tcatgtgaag atgacatgta taaattatgt aagccaattt taatttgata      2340
     atgtttattt aatttaaaat gaaataaata cccgaatgtt tgaatcaggt acagaatatg      2400
     gggtgttgaa acacaaatat acacgagcac aaatttctcc gtgtaaagaa aaatttctag      2460
     agctagatga agccatgaaa aaaattaaag acagggaaat aacattacga gaagccgcag      2520
     gacatggaat agctggtcat caaggattta atcgatgcaa ctgtaaaact ggttgtggaa      2580
     ctaaaaaatg tgcttgtaat gcagcagaaa tgttgtgcag ttcaaaatgt catggtaacc      2640
     aaaattgtac aaataaataa tttataatat gtacgtattt cattattttt aattaactta      2700
     ttatcccatt caaataaata cctaaaataa aaaatgaatt acccaccaac aatgaatcat      2760
     tattataagt agtacctatg gtaaaaaaat cagtgtatta tttgagattt atcatcattt      2820
     accaccagtt ttggtaaatg acatcaatgg ccggtgaaag atgtacattt gaatttataa      2880
     tctggttttt tacaccattt acctacataa tcaaatcatt ttggtaatag acgtcattca      2940
     ccggagaatg acgacattca ccaatattca tctttcaccg taaca                      2985
//
ID   Ginger2-2_LMi repbase;    DNA;    INV; 2896 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Ginger2-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2896
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2981-2981 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(807..1190,1145..2188)
FT                 /product="Ginger2-2_LMi_1p"
FT                 /translation="MSLRVVDKPIKSYGEKSFWRKFCRVKTKSLLYNVLSA
FT                 DEYADLVKQVEDAEKLEKRTSLQKRRLQRFAVLKIGDVKKLIARCEGNIKY
FT                 YLPADELYDVIDTAHVAVGHGGRDRMLAETSKNMPISQRKDVSRDIKKYAN
FT                 ITKEMIGLYLSMCDVCQQKKTKKGRGLVSKPILHSEMNSRCQVDLIDFQTQ
FT                 PDENFKFILVYQDHLTKFVLLRALTSKRAEEVAYHLNDIFLTVGAPCILQS
FT                 DNGREFVNNVIRELANLWSELKIVHGKPRHSQSQGSVERANQDIENMLSSW
FT                 LKDNNTTKWSEGLRYVQFMKNRAYHSGIKQSPYKAMFGIEPRVGLSTSSLP
FT                 QEIINDIQDEDDLKKAIEDGSKTEQYEYSDDVDIVKIDTNDIENARRKATE
FT                 NLQKQAKRMKASTDKSHPPANIGDNVTIPIPDVDKGRGDLRNVIGVILQKT
FT                 DEGLYKVGTKHGVLEKHYCRYNFITISHTFL"
XX
SQ   Sequence 2896 BP; 953 A; 547 C; 592 G; 804 T; 0 other;
     tgttacaggc caaacccgat tttaggatga actagtttcg cctaggccaa accagttctc        60
     cctacatgcg ataggacaaa ccagtttagc ctaggccaaa ctagttcatc ctgttaacga       120
     taggagaaac cagtttagcc taggtcgaat cggtttatcc tagttagaat ttacatgctt       180
     taggacaaac tggtacgtcc tagtctaggg tgaccagatg tcccatattt tacgggatcg       240
     tcccttattt agcttaagtg tcctcttgtc ccgacaaaat aaatacggga tgtagattgt       300
     cccgtatttt attaaccgtc ccatatattt tgaaataacg tgtgtcaaca agatgtttca       360
     gtatttccac atacctttca tgcatgttga agaaccaaga gacttttcgg acttttctga       420
     agtggaatac taacaggtgc ttggtagtat aaaaaccaaa ttgccattcc ttcgaaccgg       480
     ttgttgatag aaatatctgg tcaccctatc ctagtctcaa ctaattttgc ctagtcggaa       540
     cgaatgtcgc tgcctgtgcg aacgagaaat ccccgaatca tcctggctcg ctgcctgcac       600
     gaatggaaat cccctaatca tctctggccc cagcctgcac gaacggggat acccgaatca       660
     cctctcgcct gcccctcgcg ccctttaacc actcttcgct cgccctgttc gttagtttgc       720
     atcgacgagt gagcgtgtta agttgctggt tgcgtttaaa agagtttatt ataatcctag       780
     tataattgcg aggcgtttta tcatggatga gccttcgtgt agtagacaag ccaatcaaaa       840
     gctatggaga gaaaagtttt tggaggaaat tttgcagagt gaaaacaaaa agtcttctct       900
     ataatgtgtt atcagcagac gaatatgcgg atttggttaa acaagtagaa gacgcggaaa       960
     agttggaaaa aagaacatca ttacagaaaa gaagactgca acgatttgct gttttgaaaa      1020
     ttggtgatgt gaaaaaactc attgcacggt gtgaagggaa tataaaatac tatcttccag      1080
     ctgatgaact ttatgatgtg attgacacag ctcacgtagc tgtgggtcat ggtggtcgtg      1140
     ataggatgtt agccgagaca tcaaaaaata tgccaatatc acaaaggaaa tgataggcct      1200
     ctatttatca atgtgtgatg tttgtcaaca aaagaagaca aaaaagggaa gagggctagt      1260
     ttcaaagcca attcttcatt cggaaatgaa tagcagatgc caagtcgatt tgattgattt      1320
     ccaaacacaa ccagacgaga attttaaatt tattctagtc taccaagacc atctcacaaa      1380
     atttgttctc cttcgtgcgt taacatcaaa gagggctgaa gaagtggctt atcacttgaa      1440
     tgacatattc ctaactgtag gggcgccgtg cattcttcaa tctgataatg gcagagaatt      1500
     tgtcaataat gttataagag aactcgcaaa tctttggtca gaactgaaaa ttgtgcatgg      1560
     aaaaccaagg cacagccaaa gtcagggttc tgttgaacgt gccaaccaag acattgaaaa      1620
     tatgttaagt tcttggttaa aggacaacaa tacgacgaag tggtcggaag gattaaggta      1680
     tgtccaattc atgaaaaatc gagcatacca ctctggcata aaacaatcac cttacaaagc      1740
     aatgttcgga atcgaaccta gagtaggact ttccacttcc tcgttgcctc aagaaatcat      1800
     taatgatatt caggatgaag atgacctaaa gaaggcaatc gaagatggca gcaaaactga      1860
     acaatacgaa tacagtgacg atgttgacat tgtgaaaatt gacacaaacg acattgaaaa      1920
     tgctagaaga aaggcgacag aaaatttaca aaaacaagca aaaagaatga aagcttcaac      1980
     tgacaaatcc catccaccag ctaacattgg agacaacgta accataccta ttccagatgt      2040
     agacaaaggc agaggtgacc ttcgaaacgt aattggagta atacttcaaa agactgatga      2100
     gggtctttac aaagttggca ccaaacatgg cgtacttgaa aaacattatt gcaggtataa      2160
     ttttattacg atttcccata cttttctgta aaaaaaaaat attaaaaaca tttgttttaa      2220
     ctttttttta gactgatttc gacgtctgca ttcagaagtt tttagatgtg ggagatatta      2280
     accaggatat tgaaatatct ttaaggactg cagccacaaa acattctgtt ggatcagggc      2340
     aaggcttcgt gaaatgcagc tgcatgaaag actgtacaac aaacaaatgc atttgtaaga      2400
     aaaacaaagt actgtgcaat tctaagtgcc accagagtaa accttgcaaa aataagtaaa      2460
     taagcaaatt tcagataaag tgatatctgt ggatgaatat actgtaagtt gatacagatg      2520
     tgaaattact gattcgttaa taaataactt ttataaatca cattgactat tctatttcta      2580
     ttcctttatt cagtttgctt tgaaaagctt atagaagata caaagtaggc gaaattagtt      2640
     cagactagga cgtacctgtt tgtcctaaag catgtaaatt ctaactagga taaaccgatt      2700
     cgacctaggc taaactgatt tctcctatcg ttaacaggat gaactagttt ggcctaggct      2760
     acactggttt gtcctatcgg taacaggatg aactagtttg gcctaggcta aactggtttg      2820
     tcctatcgca tgtagggaga actggtttgg cctaggcgaa actagttcat cctaaaatcg      2880
     ggtttggcct gtaaca                                                      2896
//
ID   Ginger2-2_MyPe repbase;    DNA;    INV; 2850 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element;
KW   Ginger2-2_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-2850
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1644-1644 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs, mostly TATA. ~200-bp
CC   TIRs. Inserted into (TA)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           739..2442
FT                 /product="Ginger2-2_MyPe_1p"
FT                 /note="transposase."
FT                 /translation="MSHSVLFYEKLKSIYDNQDKKKPWSQEDYDKALNEIN
FT                 DAKLNPGKTKTQNQYYLCRKYDLIEVGNVKHIILKPKTKTENIIYVVPYEN
FT                 YFEKIEESHKATGHGGRDKVEQNLKNKYNIPRIAIQIFINLCTTCNKKKSK
FT                 PCKGVVIKPILSADFNSRGQIDLIDFQSTPDGNFKWVMNYQDHATKYLYLR
FT                 PLTSKRATEVAHELLKIFLKQGAPQILQSDNGREFTAKIIEELAELWPECK
FT                 IVHGRPRHPQSQGSVERSNQDVENMLRAWVVDNKSTKWSIGVYFVQWQKNI
FT                 SHHRILGRSPYRALFGTEPKVGLSSTNLPAKIIQKLSSEEDFENILQDNSE
FT                 HNFDNIPSKKKIYSDINNICSVCEKSGSELKCTICKRNIHSDNCSYSINNS
FT                 NDIENICLLCNNEKQIKVNRIESYKRQTIAAKKMTENSEKLFKELKVGDQI
FT                 VISVPKVDRGPLDSQNINGLVIDIRNGVYQIGTEVGIIKNWCSREELQLVS
FT                 NNGLEDSKIQKDKFVSIREAVANLSIFNGQGFVKCQCQAGKRQCQTNRCLC
FT                 FKKNLKCSSKCHQITTCDNKQ"
XX
SQ   Sequence 2850 BP; 1121 A; 387 C; 449 G; 893 T; 0 other;
     tgtcgtaggc atatagtcaa atcaggcatt ttatcaaatg cctaggcata tagtcaaaaa        60
     atttaatgtt tatgcaattt cactatccgc ctagacattt agttaaatgc ctagtcattt       120
     aattaaatga ctaggcattt gactaaatgc ctatttcatg ccaggcaaat aataaaaaaa       180
     cattagctgt gtattattta ttaatatgaa aaacacgtag atactcgtat atgaaataat       240
     atgtttaatt ttgtgttaat tattatttag tattgtttta aaaatgaaat cataaatata       300
     ttcaggtaat aactaattag atgtgataga cataaatgat agtacgagta ttttgtatag       360
     catatatagt caatatagtc tatagtacga gtagtgagta ctatatattc ttattaaata       420
     aaaataaaag ttccattggt ttttaccttg gaaaattaac gtgggtacta ggttgtatga       480
     gaaccttatc tatattgagt accgtgggac aaattataat cttatcgatt ataacgacaa       540
     aaatatgacg ttaccaaaaa agatacagaa catgcgattg aattgtacaa taatttagtt       600
     tagtacgtct attacgttta cgtaaatcgt atgtagtgtg atcgtgattg catgtaatat       660
     tgtaacatag gtataccaat tgacattttt tgtatattta aaattttgat tgtttttatt       720
     tgtattttaa aatataatat gtcacacagt gtattgtttt atgaaaaatt aaaatcaatt       780
     tacgacaacc aagataaaaa aaagccatgg agtcaggaag actacgacaa agctctaaac       840
     gaaatcaatg atgcgaaatt gaatccaggt aaaactaaaa ctcaaaacca atattattta       900
     tgtcgtaaat atgatctgat tgaagtagga aatgttaaac atattatttt aaaaccaaaa       960
     actaaaaccg aaaatattat ttatgttgta ccatatgaaa actattttga aaaaatcgaa      1020
     gaaagccata aagcgactgg tcatggtgga agggataaag ttgagcagaa tttaaaaaat      1080
     aaatacaaca ttcctcgaat agcaatccaa atatttatta atttgtgtac aacttgtaac      1140
     aaaaaaaaat caaaaccttg taaaggcgtc gttataaaac caatattatc ggcagatttt      1200
     aattcaagag ggcaaattga ccttattgat ttccaatcaa cacccgatgg aaattttaaa      1260
     tgggtcatga actatcagga tcacgcaacc aaatatttat atcttcgacc acttacttca      1320
     aaacgagcca ccgaagttgc acacgaactt ttaaaaattt ttttgaaaca aggagcacct      1380
     caaatacttc agtctgataa tgggcgagaa tttacagcga aaataattga agaattggca      1440
     gaattgtggc ctgaatgtaa aatagtacat gggcggccac ggcaccctca gagtcaggga      1500
     tctgtagaaa gatcaaatca agatgttgaa aacatgttac gagcttgggt cgtagacaat      1560
     aaaagtacca agtggtcaat cggagtttat tttgtacaat ggcaaaaaaa catttcacat      1620
     catcgaattt taggtcgttc gccatatcga gccttgtttg gcactgaacc gaaggtaggt      1680
     cttagttcta caaacttacc tgccaaaatt attcaaaaat tatcaagtga agaagatttt      1740
     gaaaatattt tacaagacaa ttcagaacat aattttgaca atataccttc aaagaaaaaa      1800
     atatatagtg acataaataa tatctgcagt gtttgtgaaa aatcaggtag tgaactaaaa      1860
     tgtactatat gtaaaagaaa tattcattct gataattgca gctattctat aaataatagt      1920
     aacgatattg aaaatatttg tctgctatgt aataatgaaa aacagataaa agttaaccgc      1980
     attgaatctt acaaacggca aacaatagca gctaaaaaaa tgacagaaaa tagtgaaaaa      2040
     ctatttaaag aactaaaggt tggtgatcaa atagtaatta gtgttccaaa agtagaccga      2100
     ggacctctcg atagtcaaaa tataaatggg ttagtgatag acattcggaa cggcgtttac      2160
     caaattggta cagaagttgg tataataaaa aattggtgtt caagagaaga acttcaacta      2220
     gtgtcgaata atggtttaga agatagcaaa atacaaaaag acaaattcgt gtccatacgt      2280
     gaagcagtag caaacttatc aattttcaac ggtcaaggtt ttgttaaatg tcaatgtcaa      2340
     gcaggaaagc ggcaatgtca aaccaatagg tgcttatgtt ttaagaaaaa tcttaaatgt      2400
     tccagcaaat gccaccaaat aacaacatgt gacaacaagc aataggtaac aaaaacttgt      2460
     aattataata tacctttttt atttattttt tattatttca tttttaaaac aatactaaat      2520
     aataattaac acaaaattaa acctattatt tcatatacga gtatctatgt gtttttcata      2580
     ttaataatta atacacagct tttttataca taaaatagca ataaataact gatagaaaat      2640
     atattgaaat ttttaaaata atacaaaatg tttttttatt atttgcctgg catgaaatag      2700
     gcatttagtc aaatgcctag tcatttaatt aaatgactag gcatttaact aaatgtctag      2760
     gcggatagtg aaattgcata aacattaaat tttttgacta tatgcctagg catttgataa      2820
     aatgcctgat ttgactatat gcctacgaca                                       2850
//
ID   Ginger2-3_MyPe repbase;    DNA;    INV; 2908 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element;
KW   Ginger2-3_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-2908
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1638-1638 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, mostly TATA. ~75-bp
CC   TIRs. Inserted into (TA)n microsatellites. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(773..1679,1735..1941,1999..2220,2314..2600)
FT                 /product="Ginger2-3_MyPe_1p"
FT                 /note="transposase."
FT                 /translation="MDLNKMQNEFNKAISLIIDAKRDDNKSFMNNEEYDRR
FT                 IEDVKLSKTQTKCKKDYRNIRKYDVILINDKERLIKAMNHDNDSIRYFVKN
FT                 EELFNILHSTHIAIGHGGRDRMMAEIKLKYCNITKETIMIFLSLCTDCHKK
FT                 SSNPKRGLVSKPILHSAYNSRAQIDLIDMQSQSINNYRFIMNYQDHLTKFV
FT                 ILKPLKTKRAEEIAYNLMEIYTTFGAPAILHSDNGREFVNSVINELHTMWG
FT                 DVKIVHGKPRHSQSQGSIERANRDVEDMLATWMAETNSTDWPSGLKFIQFR
FT                 KNRAFHSGMISIGRSPYEAMFGCPARLGVVSIGLPVDEISSLKSEEDIECI
FT                 LKSNKDEGVEENVPCTSNLEQVTSDIELVDQRKQNILDARQSSAHNLEKQA
FT                 LKMVKTSNRKYDELSVGTTVRLSIPDVDRARGSPRNVLAVVTEVKDDLYKL
FT                 CTESGFLKHMYTRSEINPCKANLLDLSTVLKSAGQSEKPLSLREAATVNSI
FT                 SGAQGYTRCQCKTKCKTNRCACRSASRICNSKCHGSLPCENKNE*"
XX
SQ   Sequence 2908 BP; 1095 A; 384 C; 485 G; 944 T; 0 other;
     tgttaccgga aatgttgaca atttaggaaa tgatgacaat tcctagtaaa tgttgacaat        60
     tcctaaaagc ggaaggcaat gttatcattg cctaggaatt gtcatcattt ccgtagttta       120
     ttaggcaatg ttatcactag gcccaggaat ttgatgttct aaaaaaatat ctaaaaaaaa       180
     tgcataaaat gacatttatt tattattttt tttttaaatg atattaaaaa tgtatatttt       240
     attgtaaaaa ttgattaata ttgtttcgat aaaaaattat tattattaat taattaaata       300
     aaactatata ttacctatat acctactcca attatttttt ttttatatta gattaggtta       360
     ggtttttata gttaaaaatg tacgttaaaa attaatagaa atgacaacaa agataaaata       420
     agcttataaa attattttat atatctgtgc ggagacatga aattatatca aacacgggtt       480
     tatgtcgatt ctgatagccg ttaataatca acaagctttc ttacacataa gcattgacta       540
     actcgtaatg gcacccacta agtttggtgt caactgtcaa tattttccga gatctaaaaa       600
     tatcaggtgg ggaaatgact gatatcgata aaatggttga ttgaaaaatg tcatggatat       660
     cgcatatcgc agtatttatc tgtttaatat ataacctgta cattcaacac gatccgttta       720
     gtagtaattt attagtagtg cagtacgtat ttactttgtt attaatttaa aaatggattt       780
     aaataaaatg caaaatgaat ttaataaagc aatttcatta ataattgatg ctaaacgtga       840
     tgacaacaaa tcgttcatga ataatgaaga atacgatcgt cgcatagaag acgtaaaatt       900
     atccaagact caaacaaaat gcaaaaaaga ttatagaaat attcgtaagt acgacgttat       960
     tttaataaat gataaagaac gcttaattaa agccatgaac catgataatg acagtatacg      1020
     ttatttcgtt aaaaatgaag agctattcaa tattcttcac tctacgcata tagctatcgg      1080
     ccacggtggc cgcgatcgta tgatggctga aataaagtta aaatattgta atataacaaa      1140
     agaaacaata atgatttttt tgagtctttg taccgactgt cataaaaaat catctaatcc      1200
     aaaaagaggt cttgtttcta aaccaatttt gcattcagca tacaactcgc gtgcacaaat      1260
     agatctaatt gatatgcaat cgcagagtat aaacaattac agatttataa tgaattatca      1320
     ggatcacttg acaaaatttg ttatacttaa accactaaag actaaacgag cagaagaaat      1380
     agcatataac ttaatggaaa tttatacaac ttttggagcg ccagcaattc tacattccga      1440
     taatggaaga gagtttgtta atagtgtaat taatgaatta catactatgt ggggcgatgt      1500
     taaaatagtg cacggaaaac caagacatag tcagagtcag gggtctatag aacgtgcgaa      1560
     ccgggacgtg gaagatatgt tggcgacatg gatggcggaa acaaattcaa cagattggcc      1620
     atctggatta aaatttatcc aatttcgaaa aaatcgtgct tttcattctg gtatgataag      1680
     taattaaaaa attaataatt aattttaaaa ataattttaa ttgattcttt ttaggtatcg      1740
     gtcgatcacc ttatgaggcg atgtttggtt gtccagctcg tttaggtgtt gtatcaattg      1800
     gtttaccggt tgacgaaatt agctctttga aatctgagga agatattgaa tgtattttga      1860
     agtcaaacaa agacgaggga gtcgaagaaa atgtaccgtg tactagtaac ttggaacaag      1920
     tgactagtga catagaactt ggtaaaaaaa aaatgtaata tagtttaata tatttaagtt      1980
     aataatgtat ttatttagtt gatcaacgaa aacaaaatat acttgatgca cgtcaatcat      2040
     ctgctcacaa tttagaaaaa caggcactaa aaatggttaa aacatccaat agaaaatatg      2100
     atgaacttag tgttggaact acagtacgtc tgagtattcc agatgtagat cgtgctcgtg      2160
     gatcaccaag aaatgtatta gcggttgtaa cagaagttaa ggacgattta tacaagctat      2220
     gtaagaagtt cactagtatt tttataacgt cttaatcatc ttcgtattca aactcgttat      2280
     aaaaattaat tattttattt tttctaattg taggcactga aagtggattt ttaaaacata      2340
     tgtacacgag atcagaaata aatccttgca aagcaaattt attggatcta agtactgttt      2400
     taaaatcggc aggtcaatca gaaaaaccgt tatcacttcg ggaggcagct actgtaaata      2460
     gtatttcagg ggcacaagga tatacccgat gtcaatgtaa gacaaaatgc aagacgaaca      2520
     ggtgtgcttg cagatcggca tctagaattt gtaattctaa atgtcatgga agtttgccat      2580
     gtgaaaataa aaatgagtaa ctacgttgca aatcataaaa caatgtgaaa aagcttaaat      2640
     tacataaatt aaaatgttaa aaaaatactt gtttatttat tgattattta ttaaggtgat      2700
     agtagattaa ttaataatta tgtttaataa aagaaatatt taaataaata agtcagatta      2760
     aatttaaaaa atgtggcatc tttgcctact atcgttagga aatgataaca tatactaggc      2820
     gatgatatca tttccttccg cttttaggaa ttgtcaacat ttactaggaa ttgtcatcat      2880
     ttcctaaatg tcaacatttc cggtaaca                                         2908
//
ID   Ginger2-4_MyPe repbase;    DNA;    INV; 3041 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element;
KW   Ginger2-4_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-3041
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1645-1645 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly TATA. 131-bp TIRs.
CC   Inserted into (TA)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           541..1578
FT                 /product="Ginger2-4_MyPe_1p"
FT                 /note="transposase."
FT                 /translation="MDSKWTAERDAEAVKILTDDASINKDRRYYHVREKFD
FT                 LIEVAGVRRVRRKRDQRIMAVVDSFHSIIRDMHVASGHKGETKTHKKIMEH
FT                 YSNITMADVKAYIANCERCVEKSKKKSTRGVVVRPILASSLNERGQVDLVD
FT                 FQSLPDGDFKFILHYKEHLTKFSFFRPLKCKKASEVAKELLHIFLTFGAPH
FT                 VLQSDSGREFTAGVIKELALLWPDLILVNGRPRYPQSQGSVERGNCTLKDS
FT                 LVAWMRDNKTAAWSYGLAXVQWGVNTTYHEAIKMTPYESVFGQKARMGLAT
FT                 KVPRELLEHIMTGTLEEEMLDMLLDPLTTPTNPEYRNDEDVRVLNTEVSRI
FT                 NGV"
FT   CDS           2159..2656
FT                 /product="Ginger2-4_MyPe_2p"
FT                 /translation="MKNIEEVVSDHPAVARRKIAAQNLKCQADRMVTRGKG
FT                 ILPRLKVGDNVLVSIPSVDRGRGDAANLLSVVMEEKXGKFRIATKEGTLNT
FT                 WLERNSLAATKYCSLTTTDVXSNEYSLRELVRLGSVGTGQGYRRCTCRTNC
FT                 TSKKCTCRKNDMMCNSACHPGNSCQNL"
XX
SQ   Sequence 3041 BP; 1021 A; 489 C; 575 G; 949 T; 7 other;
     tgttacgccg aatttgtgaa attgctgatt tcatgaaatc ggtagaaaaa ttgccgattt        60
     catgaaatca gcatcgctgt tgcagaaaac gtgaaatcgg caatttttct gccgatttca       120
     tgaaatccgc aattaaagtt tgccgatttc atgaaatagg catacttwtt tctgccgatt       180
     tcatgaattc ggtatcatat tattacgaac ataatttatt acgaatagtg atagatatat       240
     aaataaccaa tatttgaacc cattggcgtt acccttacca catcattatc tttattacct       300
     atgatgatag acgcctccac actgccgtgc cgcgtgactt tatcttatag ttactaaggc       360
     atttgtattg ttttgataaa ataatgtgac aaatattccc tacctacatg ttcaacgttc       420
     agttattcgt ttcgcctgct gaaatagtta acagtgtgtg acggttctaa aagtgcgttt       480
     attagttgca ataatcaatt ataaatataa taaaataata aataataata tttattaact       540
     atggactcta aatggacagc agaacgagat gccgaagctg ttaaaatttt aactgatgat       600
     gcttctataa ataaagatag gcggtattat cacgtccgtg agaaatttga tttgatcgag       660
     gtagctggcg tccgacgtgt gcgacggaaa cgcgatcaac gtattatggc agtagtcgac       720
     agtttccata gtattatccg tgatatgcat gtggccagtg gacataaagg tgagacaaaa       780
     acacacaaaa aaataatgga gcattactct aatattacta tggctgatgt aaaagcttat       840
     attgctaatt gtgaaaggtg tgtggaaaaa tcaaaaaaaa aaagtacgcg aggtgttgtt       900
     gtgcggccta ttttagcttc ttctttaaat gaacgtgggc aagtggacct tgttgacttt       960
     caaagtttac ctgacggtga ttttaaattt attcttcatt acaaagaaca cttgacaaag      1020
     ttttcatttt tccggcctct gaaatgcaaa aaggcttcgg aagtggcgaa agaactgtta      1080
     cacatatttt tgacgtttgg tgcacctcac gttctacagt ccgatagtgg tcgcgaattc      1140
     actgccggtg ttataaaaga attagcgtta ttatggccag atttaatatt agtaaatggt      1200
     cggccacgtt atccacaaag ccaaggatct gtagaaagag gtaattgtac actgaaggat      1260
     tcgctggtgg cgtggatgcg agacaacaaa actgccgcat ggagttacgg cctcgccktt      1320
     gtacaatggg gcgttaatac cacataccac gaagctataa agatgactcc atatgaatca      1380
     gtctttggtc aaaaagcacg aatgggactg gcaacaaaag tacctcgtga attgttggaa      1440
     catataatga caggaacgct agaagaagaa atgttagaca tgcttttgga tccattgact      1500
     actcccacca atccggaata tcgaaacgat gaggacgtac gagtactcaa tactgaagtg      1560
     agtagaatta atggtgtata attttggaac gggaaattat aatatagatt gctggtttaa      1620
     tttcgtacgt tcacaccttt atcatttttt awaatttatt gaacaactaa aatttgtgtt      1680
     tgttatgaag tattttttat taatttaatt aacgatttac gacattacaa aaaaaattta      1740
     tagattttca tacaattaaa tataactaaa ttccttaatc gtacgtatcg acggacgacc      1800
     gccgtatcgt atcatattat tatcttatcg gtgttccgaa caaatggtat aaggcagagg      1860
     ttcctaaact ttttattgtt cgacccattt taagattttt ttaaatttgg ttacgatcga      1920
     caaaaagtag tagctgataa aataataaaa aatatttttt tatagacaat agatttagag      1980
     ggtacgcagg atacaaatga attattagaa gatamtactg cgcagaaact tgataactta      2040
     ataaagacca cacgaaacat tttggatatt gaaagtgaca ccgacgaagt aagtctatgg      2100
     atataatgta attaaaatca ttaattatta actattatga ttaattatta acatttttat      2160
     gaagaatatt gaagaggtag tttccgatca tcctgctgta gcacgacgca aaattgctgc      2220
     acagaattta aaatgccaag cggataggat ggtaacgaga ggcaaaggca ttctccctcg      2280
     cttaaaagtt ggcgacaatg ttctggtgtc aatcccgtcg gtagatcgag ggcgaggaga      2340
     tgccgccaac cttctttcgg ttgtaatgga agaaaaawat ggtaaatttc gtatagcaac      2400
     caaagaagga actctaaaca catggctgga gcggaacagt ttggctgcta cgaagtactg      2460
     ttccttaacg acaacagacg ttmaatcaaa tgaatattcg ttacgggaac ttgtccgatt      2520
     aggatcagtt gggactggac aaggatatcg acgttgtacc tgccgtacga attgcacatc      2580
     aaaaaagtgc acatgtagga aaaatgacat gatgtgtaat tcggcgtgcc acccaggcaa      2640
     tagttgtcaa aatttataaa tgtaaatatt tagtaactct acttcaatat gtataaccaa      2700
     ctctcttttt tttttaataa tatttaatcg ggttatttaa tccgcttaat taaaataaat      2760
     aaaaaataat aatataaata taaataaaaa ctaagtatat ttttataact ttagtttttt      2820
     attattacaa tcagatttta ttttatcttc agcattatat gtaagatcat gagtacaaca      2880
     caattattta taatatttta agaatgggcc tgcggatttc atgaaatcgg cagaaaaatt      2940
     gcwgatttca cgttttctgc aacagtgatg ctgattccat gaaatcggca atttttttgc      3000
     ctatttcatg aaatcagcaa tttcacaaaa tcggcgtaac a                          3041
//
ID   Ginger2-5_MyPe repbase;    DNA;    INV; 3076 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element;
KW   Ginger2-5_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-3076
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1646-1646 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly TATA. 265-bp TIRs.
CC   Inserted into (TA)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           895..1632
FT                 /product="Ginger2-5_MyPe_1p"
FT                 /note="transposase."
FT                 /translation="MNGASEEMRYYVRYDDLYEIIHEAHIATGHGGRNRIV
FT                 YAVNSKYKNVNIEXINIYLKLCEPCQKKHSMPKKGLTVKPIIHTEMNSRCQ
FT                 VDLIDMQANPDNNYKFIMVYQDHLTKFVILRPLKFKRAEEVAYNLLDIFTL
FT                 FGAPNILHSDNGREFVNAVITNLCSLWSEVKIVHGKARHSQSQGSVERANQ
FT                 DIESMIATWMETNKTTKWSESLRFVQAMKNGAFHSGTYCIKIGILQDKTNK
FT                 FFKVF"
FT   CDS           1931..2635
FT                 /product="Ginger2-5_MyPe_2p"
FT                 /translation="MFGNKMKMGLANSIIPKNVLPGLQTEEDLEAALTEPK
FT                 ANIVEVGEIDEEVEIDDDVETHGETKYVETRDIENEIPARTQKIKQHREES
FT                 LIGLQKQARQMLQMSNKKMPIVLIGQTVKIKIPEVDRSKIDARTLMAKVLQ
FT                 VVDADFYRLGTKAGTLSQLFTRNQFTLCEENFLESAIIPDNEIGIRQAVSQ
FT                 LSLTGGQGLIRCDCLKKCVTNRCKCRSKNVLCNSRCHSSQACTNK"
XX
SQ   Sequence 3076 BP; 1129 A; 452 C; 516 G; 976 T; 3 other;
     tgttacggta aaagtacgaa taccggttaa acctagaatt taccggtaaa tcctaggttt        60
     cgccgattac tgttggtaaa tgtccgaatt tcggacattt accaattgat ttcggtaaaa       120
     cctaggatat acaacatcgt ttggtcaaac cccgaatgat ttttgtagtt cggactttta       180
     caaacgagat ttggtaaatc ttaggataaa caatcagtgt tagtaaaagt ccaaacattt       240
     ttaccaaagt tattaattat tattatttat attattttat ttttattata cattatgatt       300
     atgataacta aactgcgatc ggcttttatc ttgactatca taattattat tatttaagta       360
     tgaactttgt gaattttcat ttcgattttc atatacatca tgatactgta agaccttgac       420
     acgtgtacct actcatacaa tcaaatcact atcaatagaa tcacaataca atcaataaat       480
     tagccaaaaa ggtactctag gtatatgwta aaagttgttc ctactttata ctgtgttgca       540
     catacaatgc aatttagttt atgatacgga acaggtttga taatagattg attatcgatt       600
     gaataggcat catattkaaa ataatattgt gtgcagtatt cgttttacaa ttgtcgcgaa       660
     aagtatatga ttttcaatat gtcacttcaa atacggtttt atgaactttt aaatggtgtt       720
     gttgaagcaa aaaataataa aaacactcta tacataacta atgaaaagta taatgtatta       780
     ttgaacgaag tgaaagaatc aaaattggtc aaagttaaaa aatcgattca ctatcgatga       840
     cttaaacggt ttgatattgt taatattggc ggagaagaaa aactgattgt tccgatgaat       900
     ggtgcctccg aagaaatgcg ttactatgtt cgctatgatg atttgtatga aattattcat       960
     gaagcacata ttgcaacggg tcatggaggt agaaatcgta ttgtgtatgc tgttaatagt      1020
     aaatacaaaa atgttaatat tgagkctata aatatttatt taaaattatg tgagccatgt      1080
     caaaaaaaac acagtatgcc caaaaaaggt ctaactgtta aacctattat acataccgaa      1140
     atgaattcgc gctgccaagt agacttgatt gatatgcagg caaatcctga taacaattat      1200
     aaattcataa tggtctatca agatcacttg actaaatttg ttattttacg accacttaaa      1260
     tttaaacggg ctgaagaagt tgcgtataac ttactcgata ttttcactct tttcggtgca      1320
     ccaaatatac tccactcaga caatgggaga gaattcgtaa atgctgttat tacaaatttg      1380
     tgtagtttgt ggtctgaagt gaaaatagtt cacggaaaag ctcgccacag tcagtctcaa      1440
     ggttctgtgg agcgtgccaa tcaggatata gaaagtatga ttgcgacctg gatggagaca      1500
     aataaaacga cgaaatggtc agagtcctta cgattcgtac aagctatgaa gaacggagct      1560
     tttcattctg gtacgtattg tattaaaatt ggtattttac aagataaaac taataagttt      1620
     ttcaaagtat tttgactttt tttgagctat ttatacacaa ttgaaatttt caatttttct      1680
     aagtattttt ttttaaataa ccagaaaatc ttgaatattt aatacaaggt ttcttataag      1740
     ttgttcttaa agtgataaaa aaaaatctga aatcgttagt cacaattttt tgttataagt      1800
     gcttaaagtt cgaatttata cgaaatatgt caaaattgcg aaaatcagaa attttcaagg      1860
     ctggagtttt aaataaagta tacatttaat taccacattt tcaggaatca aacgctcccc      1920
     atatgaagca atgtttggga ataaaatgaa aatgggatta gcaaattcaa ttattccaaa      1980
     aaatgtatta ccaggactgc aaacagaaga ggatttagag gcagcactta ccgaaccaaa      2040
     ggcaaatata gttgaagttg gtgagataga tgaagaagtt gaaatcgatg acgatgtaga      2100
     gacacacgga gaaactaaat atgtagaaac aagggacata gaaaatgaaa taccagcacg      2160
     gacacaaaaa attaagcaac atcgagaaga atcactcatc ggcctacaga aacaagcaag      2220
     acaaatgttg caaatgtcaa acaagaaaat gccaattgta ctaattggac aaactgtcaa      2280
     aattaaaatt cccgaagtcg atcgaagtaa aattgatgcc cgcacattaa tggctaaggt      2340
     gttacaagtt gtggatgcag atttttatcg cctgggtaca aaagcgggaa cactctcaca      2400
     actgttcact cgcaatcagt tcaccttatg tgaagaaaat tttttagaat cggcaattat      2460
     accagataat gaaattggta ttcgacaagc agtatcgcaa ctgtcgttga ctggtggaca      2520
     aggactaata aggtgtgatt gtttgaaaaa atgtgtaaca aacaggtgta aatgccgatc      2580
     caaaaatgta ttatgcaact cgagatgtca cagcagccaa gcctgcacaa ataaataatt      2640
     ttataataca attaatttaa ttataataca aataatatac tagcaataaa tgtacttagt      2700
     aaatttaatt tgtcaatttt tgcattagta cttaataata ataataataa aataatatac      2760
     taactaatat attagtcatt gatatagttc ctacctaata tacttaaata ataataataa      2820
     ttaataactt tggtaaaaat gtttggactt ttactaacac tgattgttta tcctaagatt      2880
     taccaaatct cgtttgtaaa agtccgaact acaaaaatca ttcggggttt gaccaaacga      2940
     tgttgtatat cctaggtttt accgaaatca attggtaaat gtccgaaatt cggacattta      3000
     ccaacagtaa tcggcgaaac ctaggattta ccggtaaatt ctaggtttaa ccggtattcg      3060
     tacttttacc gtaaca                                                      3076
//
ID   Ginger2-N1_AP repbase;    DNA;    INV; 1530 BP.
XX
AC   .
XX
DT   03-FEB-2010 (Rel. 15.01, Created)
DT   03-FEB-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Nonautonomous Ginger2 DNA transposon from Acyrthosiphon pisum.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   integrase; Ginger; Ginger2; Ginger2-N1_AP.
XX
NM   Ginger2-N1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1530
RA   Bao W., Kapitonov V.V. and Jurka J.;
RT   "Ginger DNA transposons in eukaryotes and their evolutionary
RT   relationships with long terminal repeat retrotransposons.";
RL   Mobile DNA 1, 3-3 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TIR is 17-bp long.
XX
SQ   Sequence 1530 BP; 529 A; 235 C; 254 G; 510 T; 2 other;
     tgttaccgga aaagatgaaa attcaggaat tgtcggtata tcctagtcat tgttgacaat        60
     gactggaaag gttaggcaat gttggatatt tcktagtttt atcaacattt ccgtattata       120
     ttaggcaatg tccgaatcga aacaaatata aacacagcgc tttatcggtg atcgatctga       180
     ttatggaaca tagctatcta tactattact tattagtata taatatggta aatcctgttt       240
     tatgttatcg tttttattgc ttataactta taagttataa taaaattgac tatacagaat       300
     tatcgtagct ggtatcgtta tggwcacgta ctcacatccc gcaagtgact gtacagtact       360
     gtttgtgcat tgaagtagtg aaacaacgtg taataacatt gttttttttc aacaatctgt       420
     ttaaaaatgg atttaaatga aatgcgcata aaatttgaca acgcaattct attattaatt       480
     gaatctaaac gtaacgacaa aaactttttt ttgaataatg atgaatattg tgaacgaatc       540
     gaagaaataa aacaatccaa aattacgcta tctacggctg gagtaaaaaa gtgtacgaaa       600
     gactatagga atgttcgtaa gtacgatatt cttgttatca acggtaaaga tcgtcttatt       660
     aaaactataa ccaatgcgtc agagggtgtg cgttattatg tacaaaatga agagttgttt       720
     gatatcattc attctacaca tacagcaatc ggttacggag gccgagaccg tataatggct       780
     gaacttaaat taaaatacgt gaatgtgaca aaggaaacaa taatggttta tttaagtcta       840
     tgttctgatt tccataaaaa atcttcaaat ccaaaaagag ggcttgtatc aaaacctatt       900
     ttacattcgg catacaactc acgtgctcaa ctggatttaa tagatatgca ataacagagc       960
     gtaaatgatt tccgatttat aatgaattac caagaccacc taacaaagtt cgttgtactt      1020
     aaaccattaa aaacagcgta attttagagt gttttatttc ttcgattcgt tcacaatatt      1080
     cattattaat caaaaaaaag ttgttgtgtt acgtttagat tgtatttaat agaattgcat      1140
     tgtcaaattt tatgcgcatt tcatttaaaa ccatttttaa acagattgtt gaaaaaaaca      1200
     atgttgcttc actgcttcaa tgcacataat ttaccagata tttatacaac atttggagca      1260
     ccagccatac tgcacttaga caatggaaga gagtttgtca ataatactat aaacgaactt      1320
     catgctatgt ggggtgatgt aaaaattgtt catgggaaac cttgacatag tcagagccag      1380
     aaacttagct ctggttatca tcaatgcctt cttttattag gaattgtcat caatgactag      1440
     ttattgacgt taattcctta ctaaatcagg cattatcgtt attgactagt cattgtcaac      1500
     actgactgaa tgtcatcttt tccggtaaca                                       1530
//
ID   Ginger2-N1_MyPe repbase;    DNA;    INV; 729 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N1_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-729
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1636-1636 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 4-bp TSDs, mostly TATA. 140-bp
CC   TIRs. Inserted into (TA)n microsatellites.
XX
SQ   Sequence 729 BP; 245 A; 120 C; 99 G; 265 T; 0 other;
     tgttacgggc aaagtggaaa attcgggcaa tgtatacaat gcccgggcat tgtacacagt        60
     gaccgggcat tgtatacaat gtccgaggta tattgggcaa tgtaaattgt gaagtattta       120
     tacaaataat ctgcataata tattttgtta gatgataatg ataaactaat atgaatttat       180
     aatcgacatc tgattgtgct tgcatgtcga tcaagtcaat ttgacagcga gaattcattt       240
     cagaagatat gattggtttt acaaccaacc cttttttagc tgtacttccc ttctttttac       300
     acgattcgca attatttaag tataacatta ttacatctct agttatattt ttgtactttt       360
     tattaatctc gtgttccatt ctatttctac ctccatgtcc aattgacaaa tgaacttcat       420
     gtataatatc atataactga acattatgca cataatattt tattgcatta cctttaaata       480
     catttaaaat ttaattaatt aaaaaaaaat tctaatactc ttatataaat aaccatataa       540
     acgagtataa taattattag tatataatat cattgattag gtaaaataat attatgcaga       600
     ttatttgtat aaatacttca caatttacat tgcccaatat acctcggaca ttgtatacaa       660
     tgcccggtca ctgtgtacaa tgcccgggca ttgtatacat tgcccgaatt ttccactttg       720
     cccgtaaca                                                               729
//
ID   Ginger2-N1_RPr repbase;    DNA;    INV; 1120 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Ginger2 DNA transposon: consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1120
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3232-3232 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 1120 BP; 386 A; 164 C; 165 G; 405 T; 0 other;
     tgttacggta aaagtagata ttgcggcaaa tgtacacatt ttccgctaaa tgtgcacatt        60
     ttcctcctcg tttgggtaat gtgcattgaa ctaacattta caatttcaaa gaagggaaat       120
     gtacattgaa ttcacaatga ccatgtcgtt ttggtaaatg tgagcataca aaatacgaaa       180
     tcgcgaacaa aagtttatat catacgaaga tgttcctcaa gatgttgaga aatcggtaag       240
     agaaattata ggaatgcagt cccttactgg tggacaaggt tttaaaagat gcatctgtaa       300
     aggaacatgt tcctcaaaaa aatgcagttg taaaaatgct ggaatattat gtaattccaa       360
     gtgtcacaat agcaattctt gctcaaataa ataaaacttt tttcattatg aaatttctca       420
     tgttccttta tagttttata aaatttaact gttattgtcc tgagaagtag gcagcaagcc       480
     atacttcagg aacttacaat aaaatgatct tgttttacat tctttattta atgttttgct       540
     cttcacttct ttcttcatct ctactttctt aaggggaatt ttcaaaaaac ttataaactt       600
     ttacccctgg caaatattta acaaaatttt gtgaaaattt tgttatactc ccgataaata       660
     tttgcacagt tataataaag aaaagtatgt tattattatt atttgtttgc ttcccatcgt       720
     attggtcctg aaaaactaga cgattggacg aaaattgtat ttatgaatat tgggatcata       780
     acctacgaca tattatataa tatgcaaaga aaagtatgtt ttgtttgtca tttacatttt       840
     ttaattaaaa taattttcgt tattaaagcc ttttgtatta tgtttattta aataaatatt       900
     tttttactgc aacaacattt ttaatttatt tgtattccaa cttttcttaa aacatgaagg       960
     taagagtata catttaccaa aacgtgaagg caagagtaca catttgccgg gaaatgtaca      1020
     tatacattat attcagttca catataccta actttttagg aaatgtacac attttacggt      1080
     aaaagtgtac atttcccaag agtgtacatt taccgtaaca                            1120
//
ID   Ginger2-N2_AP repbase;    DNA;    INV; 1692 BP.
XX
AC   .
XX
DT   03-FEB-2010 (Rel. 15.01, Created)
DT   03-FEB-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   Nonautonomous Ginger2 DNA transposon from Acyrthosiphon pisum.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   integrase; Ginger; Ginger2; Ginger2-N2_AP.
XX
NM   Ginger2-N2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1692
RA   Bao W., Kapitonov V.V. and Jurka J.;
RT   "Ginger DNA transposons in eukaryotes and their evolutionary
RT   relationships with long terminal repeat retrotransposons.";
RL   Mobile DNA 1, 3-3 (2010).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TIR is 88-bp long.
XX
SQ   Sequence 1692 BP; 640 A; 230 C; 291 G; 530 T; 1 other;
     tgttacggta aatgatgtta tattggaaat taacgttatt cgccggttat ttacgttatt        60
     tacctacgaa tgtgggaatt atcgttattt tctagtgaat aacgttaata accgtatgat       120
     ttgggaaatg ttgattttat tttaaaataa tgtccaacga gcaatgataa ggtgatcgct       180
     aaactaattg tggtactaat ttggtaaacc aataaaactt tatcggccac agataaggtg       240
     gacactgggc ctatacaata tataattatt actttagtat gtgtacaact gtcgtcgtat       300
     ttaccactta tttaaaatgg ctatcgatat tcactgttcg cacaactttc aacgaaaaaa       360
     tcaaaaatat tcttacgagc aaacgagatg ataataactc atttttgtct actaaagact       420
     acaatgatgt tattgaacaa gttaaaaaat caaaaatgtg tttaaaaact gtcggtgaag       480
     ctaaaacaat gaaggactat cgtgtagtac gtaagtacga tattttaaaa ataaatggaa       540
     aagaacgcct tattagacca gttgacgaaa aaaatgttgt attgtattac gttaaaattg       600
     gtagaacgcc atatgaagcg atgtttggct gcacggctag aattggttta atgtcgtcta       660
     atcttccaaa cgatgaaata aaagaggtca ttacggaaga agatttagaa aaaataacca       720
     atgaaccaat caccgaagaa gacgaaatcg gaaatgaaat catagaaatc gcagaaaaaa       780
     attcggaact tggtacttaa atatttttta attatttaac aataaatttc cgaattctaa       840
     atataacaca aataaaacta aaatataaat atttaaaaat aaattatttt taatattttt       900
     tagatgatcg tcaagaaaat atttgtattg cacgtaaaaa ttcaaaaaaa aatttagaaa       960
     aacaaggaga gaaaatgatg aaactttcta aagaaaagtt tcctcagctt gaaataggca      1020
     caactgtacg tgtaactata ccggacgttg atagagctcg tggttctccg cgaaatatac      1080
     tggcagttgt cacccaagtt gaacatgact tatacaaact ctgtaagtta attcttaatg      1140
     aaaaaatata ttattaaaat taaaaatgtt ttaattattt tataggtacg gaacatggtt      1200
     ttcttaaata taattacaca cgccaagaaa tagctgtttg cgaagaaaat ctattagaca      1260
     tggacaatgt gataaaatta gcaggtgata gacagttgac actgagggaa gcagctagta      1320
     atagttcggt tgcgggccct caagggtacc agcgttgcca ttgcaagact ggttgtaata      1380
     ataaacgttg tgcctgccgt ggggctgaaa aattatgtaa tagtaaatgt catgggagta      1440
     caaattgtaa aaacaaataa aaaataataa tgcatttttt ctatttttaa aaatacctag      1500
     gtacatcatt tttaaaattg tagtwggtat ttgagattca cgtgcatatc tggtctataa      1560
     caacaattac ctgtgtattt ggtcattaac gtgattatcc ggtttataac gataattacc      1620
     tgtgtatttg gtaaataacg ttaataaccg gcgaataacg ttaatttcca tttaacataa      1680
     tttaccgtaa ca                                                          1692
//
ID   Ginger2-N2_MyPe repbase;    DNA;    INV; 1456 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N2_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-1456
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1639-1639 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs, mostly TATA. 669-bp
CC   TIRs. Inserted into (TA)n microsatellites.
XX
SQ   Sequence 1456 BP; 496 A; 228 C; 233 G; 499 T; 0 other;
     tgtcgcatcc acatcgcgtt attgtacatt tcacgaaatg gacaacgttt gcatccattt        60
     cgcgaaatgg aaccgtggtt tctccacttc acgtaattac acaatatgga tgatatttcg       120
     tgaaatggat acctaaacca tcatcgacgg aacttgttcc gtcatttgga tgtccatata       180
     gcaaaactta aaaaaactct aatttaatta ttatttttaa gtaaatgttt tacaaattgg       240
     tactttaata caaactatta tgcttactaa tttttacata ttatatttaa tgttttacaa       300
     atattataat attataatac tttaatacaa actattattt attcagacaa gtttgtgagt       360
     tatggcagcg agaattacat tttaaattac ctttaaaaca agcacatttt ttagtttgac       420
     atttgccttt acaacaacag cttaaaaaac cttgacctcc agttaaagaa gagacaattt       480
     ctcttaatga catctctttt gtcttattta ctttctcgat gtcaatgaaa tttgatgtgg       540
     ctggttgtat agttccagga ccataccaac ctttcagtat gccatgttca gttcctaaat       600
     ggttaaggtc atttttttgg ccaatcacta ctccaataat gttggctggg tctgcaggac       660
     ctctatccat tttgattttt ataaaattta cttaaaataa ttaattattc cattatgcta       720
     taggatagta agatcaaaat accaacattt aaagttggag actgtgttgt aatcccggtt       780
     ccaaaggtgg atagaggtcc tgcagaccca gccaacatta ttggagtagt gattggccaa       840
     aaaaatgacc ttaaccattt aggaactgaa catggcatac tgaaaggttg gtatggtcct       900
     ggaactatac aaccagccac atcaaatttc attgacatcg agaaagtaaa taagacaaaa       960
     gagatgtcat taagagaaat tgtctcttct ttaactggag gtcaaggttt tttaagctgt      1020
     tgttgtaaag gcaaatgtca aactaaaaaa tgtgcttgtt ttaaaggtaa tttaaaatgt      1080
     aattctcgct gccataactc acaaacttgt ctgaataaat aatagtttgt attaaagtat      1140
     tataatatta taatatttgt aaaacattaa atataatatg taaaaattag taagcataat      1200
     agtttgtatt aaagtaccaa tttgtaaaac atttacttaa aaataataat taaattagag      1260
     tttttttaag ttttgctata tggacatcca aatgacggaa caagttccgt cgatgatggt      1320
     ttaggtatcc atttcacgaa atatcatcca tattgtgtaa ttacgtgaag tggagaaacc      1380
     acggttccat ttcgcgaaat ggatgcaaac gttgtccgtt tcgtgaaatg tataataacg      1440
     cgatgtggat gcgaca                                                      1456
//
ID   Ginger2-N2_RPr repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Ginger2 DNA transposon: consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-458
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3233-3233 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 458 BP; 166 A; 72 C; 68 G; 152 T; 0 other;
     tgttaccgtg aaagaccgaa attggagaat gtcaagattc acttggtgaa tgttgagatt        60
     cacatagtcg cttggtgtat gtccgaaata tttgctaaat atccttattt ctgattcatt       120
     caccatgcac tgatagtgag tgttgaataa aaatattttt gttacgtttt taaatcatac       180
     tttattatta aaacatatta tgatatatgt caaaatagga gaaagcttaa gtaacagcac       240
     atgtaaataa actgttgaac ttaaaacgaa cagtacattc taaatgagaa aagaaaataa       300
     taccaataat aaacttaatt atgtgattga cgttatacaa tcttatttat tgcaacaact       360
     taaaccaaat attcggtctt tcaccaagcg actatgtgaa tctcaacatt caccaagtga       420
     atcttgacat tctccaattt cggtctttca cggtaaca                               458
//
ID   Ginger2-N3_MyPe repbase;    DNA;    INV; 780 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N3_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-780
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1640-1640 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs, mostly TATA. ~50-bp TIRs.
CC   Inserted into (TA)n microsatellites.
XX
SQ   Sequence 780 BP; 295 A; 103 C; 102 G; 280 T; 0 other;
     tgttacagtt aaagtgttga atcagttagt ttatgaaata actaggtaat ttataaaata        60
     actaaagctt gtaggtaatg tatataattt atactttaac tagttatttt atacattccc       120
     tggcatcact tcgttaatgt gtcaaattgt aaataacaaa atatcatgat aaataaatat       180
     agttctaaca ttttcaacaa tttaatataa catattaaat cagataagat tgacgtcctt       240
     ttaatttttt atttatttga tacctaccta cacattataa ttacaggagt gttattacaa       300
     ctatactctc gatcccagtt cacagtatgt tcagaaaatt tgttagctgt agaagctgtt       360
     ccaaataaaa gtattacatt aagatctgcg gcaactgcgc agtcactggg aactggtcag       420
     ggttttttta agtgcacttg taccaaaaaa tgtggcacaa agcgatgtgt ttgtaggaaa       480
     aagaggtatt gtgcaactct aaatgccata atagccttac atgaacaaat aaataaataa       540
     tataactata attaattcag taaaataaaa tattttaata tatattttaa attttaatgt       600
     attttatact ttaacggata tcaaactgaa attgtataga ataactagat attctatgaa       660
     ataactagtt aaagtacaat tttcatgtat tatttcatac tttaactaac attcgtaggt       720
     aattcatgaa ctacctagtt atttcataaa ataacggaat tcaacacttt agctgtaaca       780
//
ID   Ginger2-N4_MyPe repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N4_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-1294
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1641-1641 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly TATA. 424-bp TIRs.
CC   Inserted into (TA)n microsatellites.
XX
SQ   Sequence 1294 BP; 510 A; 147 C; 173 G; 463 T; 1 other;
     tgtcgcatcc acatagtgaa actactcatt tcatgaactg gatatccaga twgcgaaatt        60
     cgtccagata gtgaattttg acgaaaatac attatatgga tatccatttc atgaaatgga       120
     caatacctat atcgtgtact ttgtgtaatt attattttat tatataatgg ttcataaact       180
     atcattatac atttatacgt atattatatt taatttttca cgattgatta atatataggt       240
     aattttctat attgttctat acacaaaaat atagcaatta tagtcaataa attatatcat       300
     attacattat atttttattt tatttttcat aaaccatacg tatattatat tttataaaca       360
     acagtgttac ctatgtccta tattaagtgt tataaaatat tcatgaaatt aactataatt       420
     ataacctaac ctacagatcc cccaaacata atttgcgtga tcacggaaca aaaaaaaaaa       480
     ggattatata agcttggaac aaaatatggt ttactcaaag gatggttcag tagtgaatgt       540
     ttgaaaaaat caacaactca atttctcact actgatcaag ttgataaaaa tgttgaattt       600
     taggtgagag aaatgattaa aaaaatttca ggagggcaag gatttttgtc ttgttcgtgt       660
     aacgcaaaaa atccttgcca atcaagtagg tgtacttgtt ttaaaaataa tatgcaatgg       720
     aacagtcgat gtcataatca atcgtcatgt aaaaataaat aataaggaaa aaatgtatgt       780
     aaagtttaag ccgtttaagg tatgtttaag ttaatcaatt aattattttg ttaggtaata       840
     aaacaataga gaaatatagg tagttaaata ttataattat agttaatttc atgaatattt       900
     tataacactt aatataggac ataggtaaca ctgttgttta taaaatataa tatacgtatg       960
     gtttatgaaa aataaaataa aaatataatg taatatgata taatttattg actataattg      1020
     ctatattttt gtgtatagaa caatatagaa aattacctat atattaatca atcgtgaaaa      1080
     attaaatata atatacgtat aaatgtataa tgatagttta tgaaccatta tataataaaa      1140
     taataattac acaaagtaca cgatataggt attgtccatt tcatgaaatg gatgtccata      1200
     taatgtattt tcgtcaaaat tcactatctg gacgaatttc actatctgga tatccagttc      1260
     atgaaatgag tagtttcact atgtggatgc gaca                                  1294
//
ID   Ginger2-N5_MyPe repbase;    DNA;    INV; 814 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 24.09, Created)
DT   25-JAN-2019 (Rel. 24.09, Last updated, Version 2)
XX
DE   DNA transposon from the green peach aphid genome, consensus.
XX
KW   Ginger2/TDD; DNA transposon; Transposable Element; Nonautonomous;
KW   Ginger2-N5_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-814
RA   Kojima K.K.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1642-1642 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly TATA. 24-bp TIRs.
CC   Inserted into (TA)n microsatellites.
XX
SQ   Sequence 814 BP; 282 A; 107 C; 144 G; 280 T; 1 other;
     tgttaccgtc aatgatgtaa attaaggaat taatgttaat gactagtcaa taacgatatt        60
     tccgatcaaa ttaggcagta tacgatattg actaggaaat atcgttaatg tctgttatta       120
     tcagtcagtg atgtatttag aaatatttcc taggtaatga tgataactcc gggctttttc       180
     aggcgtgatg ggtaaaaata taaaatcatt tatttgttgg tttgattaga aatgttcttg       240
     tgttgtaaaa ttctagacga ttatcatgta ggtacggagt atggtatgct aaaacatagg       300
     ttcactagat cacaactggt tccgtgtcct gaaaatatat taaactatga aaagacaatc       360
     gcgactgccg gagtaaaaga aattaccgtt cgtgaggctg ctggatacgg aatcgcggga       420
     tcacaaggct atactagatg tatttgtaaa gcaggatgca aaactaatag atgtgcttgt       480
     aaaaaaacta atgttttatg caattcaaag tgtcacagta caacaaattg caaaaataaa       540
     taattatgta taatttatct tgtatttata aatttcttac ttaaaataaa tatttcgtta       600
     aacataatta tcaacattgt ctatcagtat taaacattaa ggtaagttcc tagtcatagt       660
     tctaaatgtg tttacaagat atttgagttt tacaacattg cctatattgt ctgttaatgc       720
     ctaggcattg acawtatcga ctactaatgt taggaattta taatattggc tagtcattta       780
     cgttatgaac taatttacat cattgacggt aaca                                   814
//
ID   GTWIN2_I    repbase;    DNA;    INV; 6396 BP.
XX
AC   .
XX
DT   07-DEC-2019 (Rel. 24.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   GTWIN2_I is an internal part of Gypsy-related retrovirus GTWIN2.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; env; internal portion; GTWIN2_I;
KW   GTWIN2_LTR; Gedeo_Dm; Gedeo.
XX
NM   GTWIN2_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6396
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (07-DEC-2019).
XX
RN   [2]
RP   1-6396
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   flanking LTRs are 100% identical to each other.
CC   In Ref[2], it was named as Gedeo_Dm. In some genomes, ORF3 (ENV)
CC   overlaps with 3'-LTR for a few extra amino acids (VVNN).
XX
FH   Key           Location/Qualifiers
FT   CDS           375..1748
FT                 /product="GTWIN2_I_1p"
FT                 /translation="MSWAAYRDIKVECDSGDEFDLESVGFCPNTTDSPAAM
FT                 DAXQLQAIIXGAVNQALTEQESRLXQRFQAQLDEVKKQMQSLRVEAPQIEA
FT                 YQKIQPDPSIPCGVKLDIVKTLPDFSGEQDDYVSWRQSAVDAYEIFKRYEG
FT                 SEAHYQAVSIIRNXIRGSARGLLVAHNTVLNFDAIIARLDCTYADKTSLRV
FT                 LRQGLETVRQGDXSLMQYYDEVEKRLTLITNKIVMTHEPGSAILFNNEVRE
FT                 DALHAFIAGLRKPLRAIVLPAQPKDLPSALALARESEATIERTNFAATYAR
FT                 ALEDKAGTYEXRKDRNRSREPQGRYSRAEDSQGRNPHFYKKQGKQNNSAQN
FT                 NNSSRNQSPEPMELGSTVTQHRQPISFGSGQPTNAKAESARGQKRFGSARL
FT                 TGQRRQRLQNTMQQADDKNDSEYDGAAAAAITEIDDESDENDQINFLGNAP
FT                 DCRSLNDSCKGGN"
FT   CDS           1682..4783
FT                 /product="GTWIN2_I_2p"
FT                 /translation="SDQFFRERSRLPFIERQLQGRQLKILIDTGAAKNYIK
FT                 PVKELKHVVPVDSPFTVSSIHGSNXVHQKCLMNIFGKTSAFFLLDALSPFD
FT                 GIVGFDLLAQVGAKLDAKKGTINYGSVSEKLQHHNCDNVNFTNVNDIAVPE
FT                 PVKTQFRGMIESRSKAFSASDEALPFNTSVVATIRTTDDKPVYSKLYPHPM
FT                 GVSEFVKREIADLLQKGIIRTSKSPYNNPTWVVDKKGHDELGNKNKRLVID
FT                 FRKLNEKTIADKYPMPNIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDRE
FT                 KTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREQIGKSCYVYVDDVI
FT                 IFSENENDHVKHIDWVLKSLCNANMKVSSEKTHFFKQSVEYLGFIVTNGGA
FT                 KTDPEKVKAIKEYPEPTNLYELRSFLGLASYYRCFVKDFAAIARPLTDLLK
FT                 GVNGSISKHMSKKTPIEFGDLQRDAFERLRNVLASEDVILRYPDXRKPFDL
FT                 TTDASANGIGAVLSQDKRPITMISRTLKESESHYATNERELLAIVWALGKL
FT                 QHYLYGTRDINIYTDHQPLTFAVSDRNPNPKIKRWKAYIDDHNAKIHYKPG
FT                 KDNHVADALSRQNINALQNEPQSDAATIHSELSLTYTVETTDQPVNCFRNQ
FT                 IVIEEARFRLKRSLVLFRSKTRHLINFTDKSTILEMLKEVVNPEVVNAIHC
FT                 DLPTLASFQHDLISHFPATQFRYCKNMVIDVTNRNEQLEIITTEHNRAHRA
FT                 AQENTKQVLRDYYFPKMSSLAKEVVANCRICTKAKYDRHPRKQELGETPIP
FT                 SYTGEMLHIDIFSTDKKQFLTCVDKFSKFAIVQPVLSRTIVDVTGPLLQLV
FT                 NVFPKIRTIYCDNEAAFNSETVTSLLKNSYHIDIVNAPPLHSSSNGQVERF
FT                 HSTLTEIARCLKLDKKISDTTELILRATVEYNKTLHSVTQEKPVEILHSGS
FT                 DDRCLGVRDKLIKAQKNNIERCNPARQNRVFEVGDEVFVKNNKRLGNKLTP
FT                 LCTEQTVQADLGTSVLIKGRVVHKDNLK"
FT   CDS           5111..6394
FT                 /product="GTWIN2_I_3p"
FT                 /translation="MVDETKKLSASFPQSHMRKLLDVDTDHLVNLLSVLKI
FT                 HHRIARSLDFLGTALKVVAGTXDASDFLKIKMTEAQLVDSNSRQININSET
FT                 QIQINKLTDTVNKIIKARNNDLVDTPHLYEALLARNRMLTTEIQNLILTIT
FT                 LAKANIVNPTILNHADLSSLIEQDTPIVSLLEASKIRVLQSDSIIHILIAY
FT                 PRVKVRXKKVLVYPVSHYQTILRLDEDTLAECEEDTFSVTECMETTHSTFC
FT                 ERSRRETCARSLHAGNTAQCHTQSSHLRAVTPIDDGIVIINEATARISTDG
FT                 GPEVLVKGTHLVTFERSAIINGSEFVNFRKTIDKQPGVARSPLLNIVGHDP
FT                 ALSMPLLHRMNXDNLRFIQGFKDEVDAAGSPKLWFVAGVVLNVGLIGSLIL
FT                 FLALRRRRASAEIQHTIDKLNITEDGQNLRGGGG"
XX
SQ   Sequence 6396 BP; 1975 A; 1454 C; 1451 G; 1499 T; 17 other;
     ggcgcccagc gtttattacg gacctagagt atcttaacag kkwagttaag agaagaaaat        60
     atgtaagttc aatgagtgaa tttaattcgg cagtcttcga ttattaaata aataaaaaat       120
     aaaaagctaa caatttgtwg cgtgctttta ggaagttgaa tttccgttgc atacttttac       180
     caaagtgtta tttaccgttg cataccccaa gttactgtga gctattgctg cccaaaggaa       240
     tgaataataa ataataaata gtaaataaat tattcctttg cgcaagcctg ttcttttgaa       300
     ggaaattttg tcgatttcca tttctcgcgc acttagatag tgaaatatat gtgcgaagtg       360
     tcaaccaatg gtaaatgagt tgggcggcat atagagacat taaggtcgag tgcgatagtg       420
     gcgacgagtt tgatttagag tcagtaggtt tttgtccgaa tactacagat agccctgcag       480
     ccatggacgc ckcacagcta caagctatta tagmtggagc tgttaaccag gctttgaccg       540
     aacaggaaag cagactaawt caaaggttcc aggcacagtt agatgaagtt aaaaaacaaa       600
     tgcagagctt gcgtgtggaa gcaccacaaa tagaggcata ccagaaaata caaccagatc       660
     ctagcatacc atgcggagtc aagctggaca ttgtgaagac attgccagat ttttcggggg       720
     agcaggacga ctatgtgtca tggcggcagt cagccgtaga cgcatacgaa atcttcaaac       780
     ggtatgaggg tagcgaggcg cattatcagg ccgtctcgat tatcagaaac awaattaggg       840
     ggtcagcgag agggctacta gttgcccata acacagtctt aaatttcgat gctattattg       900
     ctcgactaga ttgcacctac gcggacaaaa cgtcgctgcg tgtacttcgg cagggacttg       960
     aaacagttag gcaaggagac mttagcctaa tgcagtatta tgacgaggta gaaaaacgat      1020
     tgacgttaat aacaaacaag atcgttatga ctcacgaacc gggtagtgct attctgttta      1080
     acaatgaagt tagagaggat gctctccacg cgttcattgc cggtcttagg aagcccttga      1140
     gggccatagt cttgccggcg cagcccaagg atttgccctc agctttagcc ttggctaggg      1200
     aatccgaggc taccatagag cgcactaatt ttgccgccac atatgcgagg gctttagagg      1260
     acaaggcagg cacttatgag maccgaaaag atcggaaccg ctcaagggag ccgcagggaa      1320
     gatacagcag ggccgaggat agccaaggca gaaaccccca tttttacaag aagcagggta      1380
     agcaaaataa ttctgcccaa aataataact cctctcggaa tcagtcacct gagcctatgg      1440
     agttaggctc cactgtaacc caacataggc aaccgatctc gtttggaagc ggtcagccta      1500
     caaacgccaa ggccgagagt gctcggggcc agaaaagatt cggctccgca cgcttgacag      1560
     gtcagaggcg tcagagattg cagaacacca tgcaacaggc tgacgataaa aatgacagcg      1620
     aatatgatgg cgcggccgca gcggccatta ccgagataga tgacgagtct gacgaaaatg      1680
     atcagatcaa ttttttaggg aacgctcccg actgccgttc attgaacgac agctgcaagg      1740
     gaggcaacta aaaattttaa tcgacacagg ggcggcaaaa aactacatca agcccgtaaa      1800
     ggagcttaaa catgtggtgc ccgtcgattc ccctttcacg gttagttcca ttcatggctc      1860
     taacakggtt caccaaaaat gtttaatgaa tatttttgga aaaacatctg cgttcttcct      1920
     tttggacgca ctgtcaccat tcgatggtat tgtagggttt gacctcctag ctcaggtggg      1980
     agcaaaactc gacgcaaaga aaggtacgat aaattatggt tctgtttctg agaagcttca      2040
     gcatcataat tgcgataatg ttaattttac taacgtaaat gacatcgccg taccagagcc      2100
     tgtaaagacg caatttcgag gtatgatcga aagcagatct aaggcgtttt cagcctctga      2160
     cgaggcactt ccgtttaaca cctctgttgt tgccacaatt cgcactacag atgataagcc      2220
     ggtatactcc aagctatatc cgcatcccat gggtgtgtct gagtttgtca agcgagaaat      2280
     cgcagactta ctgcagaaag gcatcattag aacttcaaag tcgccgtaca acaacccaac      2340
     ttgggttgtg gacaaaaaag gccacgatga attggggaac aaaaataagc gtttggttat      2400
     agactttagg aaacttaacg aaaagaccat cgctgataag tacccaatgc caaacatccc      2460
     catgatactg gcgaacttag gaaaagctaa gtactttacg acgttagatc taaagtccgg      2520
     ctaccaccag atatacttgg ccgaacatga ccgtgaaaag acctcttttt cggtaaacgg      2580
     cggaaagtat gagttttgtc ggttaccgtt cggattgaag aatgcgggaa gcatcttcca      2640
     aagagcgatc gacgacgtcc tacgagagca aattggcaaa tcgtgctatg tttacgtaga      2700
     tgacgtcatt attttttccg aaaacgaaaa tgaccacgtc aagcatatag attgggtttt      2760
     aaaaagcctg tgcaatgcca acatgaaggt gtccagcgaa aagacacact tctttaagca      2820
     gagtgttgaa tatctggggt tcattgttac caatggaggt gcaaaaaccg acccagaaaa      2880
     ggtaaaggcc ataaaggaat acccagagcc tacaaatttg tatgagctaa ggtcgtttct      2940
     gggtttggcc agttattacc gttgcttcgt gaaggacttt gcggcgatcg cgaggccctt      3000
     gacggacttg ctgaaaggag taaacggctc tatcagcaaa cacatgtcca agaaaactcc      3060
     tatcgagttc ggtgatttgc agagagatgc atttgagagg ctgagaaacg tcttggcttc      3120
     tgaagatgta attctcagat accccgattt waggaagcca ttcgatctaa cgacggatgc      3180
     ttctgctaac ggtattggtg cggttttatc gcaagataaa agacccatca ctatgatctc      3240
     caggacccta aaagaaagcg agtcacacta cgccacaaat gaaagagaat tgttggccat      3300
     agtgtgggcc ttaggcaagt tacagcacta cctctacggc actcgcgata taaatattta      3360
     tacggaccat cagccgttga cattcgcggt gtccgatcgg aacccaaacc cgaagataaa      3420
     aagatggaaa gcgtacattg atgaccataa cgcaaaaatc cactacaaac cgggaaaaga      3480
     caaccatgtg gctgacgctc tttctaggca gaacatcaat gccctacaaa atgagcctca      3540
     gtcagacgct gcgactattc acagcgaact gtcattgacc tacacggtcg aaacgacaga      3600
     ccaaccggtg aactgcttca gaaatcagat tgttatagaa gaagcacgtt tccgactgaa      3660
     gcgaagcttg gtattgtttc gtagtaaaac tcgccactta atcaatttta ccgacaaaag      3720
     caccatttta gaaatgctga aggaggtagt aaaccccgaa gtcgtgaatg cgatacactg      3780
     cgatctgccc accctggcaa gttttcaaca cgatttaatt tctcatttcc cggctacgca      3840
     gtttcgatac tgtaagaata tggtgataga cgttaccaat agaaatgagc agttggaaat      3900
     tatcacgaca gaacacaatc gtgcacacag ggcggctcag gaaaatacca agcaagtact      3960
     gcgcgactat tatttcccca aaatgagcag cctggcaaag gaagtggtcg caaattgcag      4020
     aatatgcacc aaggccaaat atgacaggca ccctagaaaa caggagctcg gggagacacc      4080
     catacctagc tataccggcg aaatgttgca cattgatatt ttctcaaccg ataagaagca      4140
     attcttaaca tgcgttgaca aattctcaaa gtttgcaata gtgcaaccag tgctgtccag      4200
     aacaatagtg gacgtcacgg ggcccctgct tcaactcgta aatgtgttcc caaaaatccg      4260
     aacaatatat tgcgacaatg aagccgcctt taactctgaa accgtcacct cgctacttaa      4320
     gaatagctac cacattgaca ttgtgaacgc gccccctctg catagctcgt caaacggtca      4380
     agtggaacgg ttccacagca ccttgacaga aatcgccagg tgtcttaaac tagacaagaa      4440
     aatcagcgat acgacagagt taatcttaag ggcaacggta gagtacaata agaccctaca      4500
     ttctgtcact caggagaaac cggtcgagat cctccactcg ggttccgatg atcgctgcct      4560
     aggcgttaga gacaagctga taaaggccca gaagaacaac atcgaaagat gcaacccagc      4620
     tagacaaaac cgtgtttttg aggtaggaga cgaggttttt gtcaaaaaca ataaaaggct      4680
     tggaaacaaa ctgacaccat tgtgcacaga acaaacagtg caggcagacc tmggaacgtc      4740
     tgttcttatt aaggggaggg tggtccataa ggacaaccta aaataggtcc ccccactttt      4800
     agttagcttt aagatattcc ttatgttttt ttattcgtct ttaaatagca gcaactaaac      4860
     ttagagggcg aggaggcaaa tttatataaa tttccagtag taagcctgat ttaagctaat      4920
     atgccgtggt ctcattctac gtttggtttg caggttcgcc ctcataacac tcatcaccct      4980
     ggcagtggca agtgctcgga ttaccgactt ttcccacgcc aactacattc ccgtcgtaaa      5040
     cggagatgta ctggtgtttg agcatcgtaa ttgcctgagg cattcgagca acctgtctga      5100
     ttatatttac atggtagatg aaacaaagaa attgtccgct tcctttccac agtcgcatat      5160
     gcgaaagttg ttagacgtcg atacagatca ccttgtaaac ttattgtccg ttctaaaaat      5220
     acaccaccgt atcgctagaa gcttagactt cttaggtaca gctcttaagg tagttgcggg      5280
     aactsccgac gcctcagatt ttctaaagat caaaatgacc gaagckcagc tagtggattc      5340
     caactccaga caaattaata taaattccga aacccaaata caaataaaca aactgaccga      5400
     caccgtgaac aaaattatta aagcccgaaa caacgacttg gtcgacaccc cgcatctgta      5460
     cgaggcacta ctagcgagaa atagaatgct gacaacagag atccaaaatt taattctcac      5520
     aataacattg gctaaagcta acatagtaaa tcccacaatc cttaatcatg ccgatttaag      5580
     ctcattaatt gaacaagaca ctccaatagt tagcttatta gaagcctcta agattagggt      5640
     tcttcagtcc gacagcatta ttcacatact aatagcctat cctagggtga aggtcagatg      5700
     waagaaggtt ctcgtatacc cagtatcaca ttaccagaca atcctgcgac tcgatgaaga      5760
     caccctagca gagtgcgagg aagacacctt ttcggtcacc gagtgcatgg agaccacgca      5820
     cagcaccttc tgcgagcggt ctcgacgcga aacctgcgcc cgctcactcc atgcgggaaa      5880
     tacagcccaa tgccacacgc aatccagcca ccttagggca gtaacgccta tagatgacgg      5940
     catagtcatc atcaacgagg caacagcccg catcagcacg gacggcggcc cagaggtact      6000
     cgtcaaagga acacatcttg ttacattcga acgatcagct atcatcaacg gatcggagtt      6060
     cgtaaacttc cggaaaacaa tagacaagca gcctggcgta gcaagatcgc cactactgaa      6120
     catcgtcggc cacgacccgg cactgagcat gcctctgcta caccgcatga acmacgacaa      6180
     cctgcgcttt atccaagggt tcaaagacga ggttgacgcc gcgggttccc ccaaactttg      6240
     gttcgtggct ggagtagtcc ttaacgttgg tctgattggt tcgctcatcc tttttctggc      6300
     attaaggaga aggcgagctt ccgctgagat acaacatacc atcgataaac ttaatataac      6360
     cgaggacggt caaaatctta gggggggggg gggggt                                6396
//
ID   GTWIN2_LTR  repbase;    DNA;    INV; 565 BP.
XX
AC   .
XX
DT   07-DEC-2019 (Rel. 24.12, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 1)
XX
DE   GTWIN2_LTR is an LTR part of Gypsy-related retrovirus GTWIN2.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; GTWIN2_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-565
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Repbase Reports 19(12), 2706-2706 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 100% identical to each other.
XX
SQ   Sequence 565 BP; 167 A; 149 C; 119 G; 130 T; 0 other;
     agttaacaac taagagcaca gacattcatg tcaacaatac ataaacacta agttaccaca        60
     tataagcaat gctgacgcgc cccaacggag ttcagcgctc tgcgctacga acggtcagca       120
     acagcaattg gacacccctt atccggggta ccaagctatg ttgcataaat gctgagtcgg       180
     cttgccgacc atgggtttat ggcgtgatgc attggagcca gggtagatcc acacttttca       240
     tattcttttg tattcagttc taagcttgca ctttaacaat aaagatcagc tactccggca       300
     cttggccgta aaataccaat tgttttaatt gaacattctc gttgagccaa aaggccatcg       360
     aaagaccacg ggggcaaagt cacgccctcc atcctaatct tcctaagacg tcttcacctc       420
     tggcataata gccggactta ctgaggactc aggagagtcg acgttgcgcc tggataacac       480
     ccagcccaag gagacgacgc acatcaaccc tataccacgg agccatctgt aaaagaggac       540
     caccggacta taggacttat taagt                                             565
//
ID   GTWIN_I     repbase;    DNA;    INV; 6421 BP.
XX
AC   .
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GTWIN_I is an internal part of Gypsy-related retrovirus GTWIN.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; LTR-retrotransposon; env;
KW   internal portion; GTWIN_LTR; GTWIN_I.
XX
NM   GTWIN_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6421
RA   Kapitonov V.V. and Jurka J.;
RT   "GTWIN_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   [1] (Consensus)
XX
CC   GTWIN_I is an internal part of GTWIN endogenous retrovirus
CC   flanked
CC   by GTWIN_LTR long terminal repeat.
CC   There is ~70% identity between GTWIN_I and GYPSY_I nucleotide
CC   sequences. There is 76% identity between pol (position 1793-4897)
CC   and env (position 4950-6421) polyproteins
CC   encoded by these two elements. Gag polyprotein (position 486-
CC   1862) show 53% identity to Gag encoded by GYPSY_I.
CC   Two GTWIN_I copies found in AC006215 GenBank sequence [1]
CC   constitute an element composing of three identical LTRs separated
CC   by
CC   two identical GTWIN_I sequences. A 4 bp-long target site
CC   duplication
CC   flanking first and third LTRs indicates that the 3-LTR construct
CC   has been integrated as one unit. An ORF encoding env is
CC   interrupted by a false stop-codon at position 5622-5624.
XX
FH   Key           Location/Qualifiers
FT   CDS           486..1859
FT                 /product="GTWIN_I_1p"
FT                 /translation="MSWTAYRDIKVERNSDGEFDLEPVGFCPNTTNSTAAM
FT                 DAAQLQAIIAGAVNQALTEQENRLKRDFQAQLDEVKQQMQHLRVEAPQVET
FT                 YQKITAGPEVRCDIKLDIVKTMPDFSGEQDDYVSWRQSAVDAYEIFKRYNG
FT                 SEAHYQAVSIIRNKIRGPARGLLVAHNTVLNFDAIIARLDCTYADKTSLRV
FT                 LRQGLDTVRQGELSLMQYYDDVEKRLTLITNKIVMTHEPDSAILFNNEVRE
FT                 DALHAFIAGLRKPLRAIVLPAQPKDLPSALALARESEATIERTNFAATYAK
FT                 ALEDKAITYEHRKDRNHSREPHGRYSRAEDSQGKNPHFYKKQGRQNNSAQN
FT                 NNSYRNQSPEPMELGSTVTQHRQPTSFGSGQPASVKAEGARGQKRFGSARM
FT                 TGQRRQRVQNTIQQADDKNDSEYEGAAAAAVTEIDDESDENDQINFLGSAP
FT                 DCRSLNASSMGGN"
FT   CDS           1793..4894
FT                 /product="GTWIN_I_2p"
FT                 /translation="SDQFFRERSRLPFIERQFHGRKLRILIDTGAAKNYIK
FT                 PVKELKNVVPVNSPFTVSSIHGSNTVKQKCLVNIFGKTADFFLLDTLTLFD
FT                 GIIGFDFLAQVGAKLDTEKGTINYGSVVEELQHHSCDEVNFTNVNDATVPE
FT                 SVKTEFTAMIANRSKAFSASNEALPFNTSVVATIRTSDDKPVYSKLYPHPM
FT                 GVSEFVKREIADLLQKGIIRTSRSPYNNPTWVVDKKGHDEQGNKNKRLVID
FT                 FRKLNEKTIADKYPMPNIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDRE
FT                 KTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDILREQIGKSCYVYVDDVI
FT                 IFSENENDHVKHIDWVLKSLCDANMKVSNEKTHFFKQSVEYLGFIVTNGGA
FT                 KTDPEKVKAIKEYPEPTNLYELRSFLGLASYYRCFVKDFAAIARPLTSLMK
FT                 GENGSISKHMSRKTPIEFGDLQRDAFERLRNVLASEDVILRYPDFRKPFDL
FT                 TTDASANGIGAVLSQDKRPITMISRTLKESESHYATNERELLAIVWALGKL
FT                 QHYLYGTRDINIYTDHQPLTFAVSDRNPNPKIKRWKAYIDDHNAKIHYKPG
FT                 KDNHVADALSRQNINALQSEPPSDAATIHSELSLTYTVEATDQPVNCFRNQ
FT                 IVLEEARFRLKRSLVLFRSKTRHLINFADKSTILEMLKEVVNPDVVNAIHC
FT                 DLPTLASFQHDLIVHFPATQFRYCKNIVIDVTNRNEQLEIVTTEHNRAHRA
FT                 AQENTKQILRDYYFPKMSSLAKEVVANCKICTKAKYDRHPKKQELGETPIP
FT                 SYTGEMLHIDIFSTNKKQFLTCIDKFSKFAIVQPVLSRTIVDVTGPLLQLV
FT                 NLFPKIKTIYCDNEAAFNSETITSLLKNSYHIDIVNAAPLHSSSNGQVERF
FT                 HSTLSEIARCLKLDKKISDTTELILRATIEYNKTLHSVTQEKPVEILHSGP
FT                 DDRCLGIKDKLVKAQKNNIERCNPARQNRVFEVGDEVFVKNNRRLGNKLTP
FT                 LCTEQKVQADLGTSVLIKGRVVHKDNLK"
FT   CDS           join(4950..5621,5625..6419)
FT                 /product="GTWIN_I_3p"
FT                 /translation="ICRGLNLRLVCRFALVTLIILAVANARITDFSHAKYI
FT                 PVVDGDVLVFEHRNCLRHSSNLSDYIYMVDETKKLSASFPQSHMRKLLDVD
FT                 TDHLVNLLSVLKIHHRIARSLDFLGTALKVVAGTPDASDFLKIKMTEAQLV
FT                 DSNSRQININSETQIQINKLTDTVNRIIKARNNDLVDTPHLYEALLARNRM
FT                 LATEIQNLILTITLAKANIVNPTILNHADLSSLIQNTPIVSLLEASKIRVL
FT                 QSDSIIHILIAYPRVKVKCKKVLVYPVSHYQTILRLDEDTLAECEEDTFSV
FT                 TECVETTHDTFCERSRRDTCARSLHAGNTAQCHTQSNHLRAVMPIDDGIVI
FT                 INEATARVSTDGGPEVLVKGTHLITFEQSATINGTEFVNLRKAINKQPGVA
FT                 RSPLLNIVGHDPELSMPLLHRMNNDNLRFIQGFKDEVDAAGSPKLWFVAGV
FT                 VLNVGLIGSLILFLALRKRRASAEIQQTIDKLNITEDGHNLRGG"
XX
SQ   Sequence 6421 BP; 1992 A; 1499 C; 1423 G; 1507 T; 0 other;
     ggcgcccaac gtgcatttga acctgcacct agttatatct taacataaca cttagttgag        60
     aatacaagcc atgtaagttt gattaatgaa gtcactcggc aaccttaaga atttagtgtg       120
     gaatattaaa taaataaaaa aagctaacag ccatttcttt gcatgctttt agggagcatt       180
     attttccaca gcatactttt accaagttac aattctgtag cataccccaa gttacccgct       240
     cgtttcaatt gcatactttt accaagcgta aattctacag cataccctag gttactttga       300
     actactgccc aaacgaatta ataagaaata attatttctt ctgcgcatac tttttccttg       360
     tttgtttgta gggatttcct tttcctttgt gtcgccttct atttctcgcg tgtgcaaata       420
     tcgcgcctcg tatggccgat caaccgtgtt cggaaagaat taaattgcgt ggtgtcaacc       480
     aataaatgag ttggacggca tatagagaca taaaagtcga gcgcaatagt gacggcgagt       540
     ttgatttaga gcccgtaggt ttttgtccga atactacaaa tagcactgca gccatggacg       600
     ccgcacagct tcaagctatt atagcgggag ccgttaacca ggctttgact gagcaggaaa       660
     acagacttaa gagggatttc caggcgcaat tagatgaggt aaaacaacag atgcaacact       720
     tgcgtgtgga agcaccacaa gtagagacat accaaaaaat aaccgcaggc ccggaagtac       780
     ggtgcgacat caagcttgac attgtgaaga caatgccaga cttttcggga gagcaggatg       840
     actatgtgtc atggcggcag tcagccgtgg acgcatacga gatcttcaaa cgatataatg       900
     gtagcgaggc gcattaccag gccgtttcga ttatcagaaa caaaattagg gggccagcaa       960
     gagggctgct agttgcccat aacacagtcc taaatttcga tgccattatt gctcgactag      1020
     actgcaccta cgcggacaaa acgtcgctgc gtgtacttag gcaaggactc gacacagtta      1080
     ggcaagggga gcttagcctc atgcaatatt acgacgatgt agagaaacgg ttgacattaa      1140
     taacaaacaa gatagttatg actcacgaac cggacagtgc tattcttttt aataatgaag      1200
     ttagagagga tgctctccac gcgttcattg ccggtctaag gaagcccttg agggccatag      1260
     tcttgccggc gcaacccaag gatttgccct cagctttagc tttggctagg gaatccgagg      1320
     ctaccataga acgcactaac tttgccgcta catacgcaaa ggctctagag gacaaggcaa      1380
     tcacctatga gcaccgaaaa gatcggaacc actcaaggga accgcatggg agatatagca      1440
     gggccgagga cagccaaggg aaaaaccctc atttttacaa gaaacagggt agacaaaata      1500
     attctgccca gaataataac agctaccgga atcagtcacc tgagcctatg gagttaggct      1560
     ccactgtaac ccaacatagg caaccgacct ccttcggaag cggtcagcct gctagcgtca      1620
     aggccgaggg tgctcgtggc cagaagagat tcggctccgc acgcatgact ggtcaaaggc      1680
     gtcagagggt gcagaacacc atccaacagg ctgacgataa aaacgacagc gaatatgagg      1740
     gcgcggccgc agcggccgtt accgagatag atgacgagtc tgatgaaaat gatcagatca      1800
     attttttagg gagcgctccc gactgccgtt cattgaacgc cagttccatg ggaggaaatt      1860
     gagaatttta atagacacag gggcggcgaa aaactacatc aagcccgtaa aggagctaaa      1920
     aaatgtggtg ccggtcaatt cccctttcac agttagttcc atccacggtt ctaacacagt      1980
     caaacagaaa tgtttagtta acattttcgg gaaaacagcg gattttttcc ttttggacac      2040
     gttaacactt ttcgatggca ttattggatt tgattttcta gctcaagttg gagcaaagct      2100
     agacacagaa aaaggcacaa tcaactatgg ttctgttgtt gaagagctac agcatcatag      2160
     ttgcgacgag gtaaatttca ctaacgtgaa tgacgctacg gtgccagaat ctgtaaaaac      2220
     tgagtttaca gccatgatcg caaacagatc taaggcattt tcagcctcta acgaggcact      2280
     gccgtttaat acttctgttg ttgccacaat tcgcacaagc gatgataagc cagtatattc      2340
     caaattatac ccgcacccca tgggtgtctc tgaatttgtt aagcgagaaa tcgcagactt      2400
     actgcagaaa ggcattatta gaacctcaag gtcgccgtac aacaatccaa catgggttgt      2460
     tgacaaaaaa ggccatgacg aacaggggaa caaaaataag cgtttggtta tagactttag      2520
     gaaacttaac gaaaaaacca tcgctgataa gtacccaatg ccaaacatcc ccatgatact      2580
     ggcaaattta ggaaaagcca agtacttcac aacattagat ttgaagtccg gctaccacca      2640
     gatatacttg gccgaacatg accgtgaaaa gacctccttt tcggtgaacg gcggaaagta      2700
     tgaattttgt cgattaccgt tcggattgaa gaatgcggga agcatcttcc aaagagcgat      2760
     cgacgatatc ctacgggaac aaattggcaa gtcatgctac gtttatgtag atgacgtcat      2820
     tattttttct gaaaatgaaa acgaccatgt taagcacata gattgggtct taaaaagcct      2880
     gtgtgatgcc aacatgaagg tgtccaacga gaagacgcac ttttttaagc aaagcgttga      2940
     gtaccttgga tttattgtca ccaatggagg tgcaaaaacc gacccagaaa aggtaaaggc      3000
     cataaaggaa tacccagagc ctacaaattt gtatgagcta aggtcatttt tgggtctggc      3060
     cagttattac cgctgcttcg ttaaggactt tgcggcgatc gctagaccgt tgacgagctt      3120
     gatgaaagga gaaaacggct ccatcagcaa gcacatgtcc aggaagactc ccatcgagtt      3180
     cggtgatttg cagagagatg cattcgagag gctgagaaat gtcttggctt ctgaagatgt      3240
     aattctcaga taccctgatt tcaggaagcc attcgatcta acgacggacg cttccgcaaa      3300
     cggtatcggt gcagtcctat cgcaagataa aagacccatc actatgatct ctaggaccct      3360
     caaagaaagc gagtcacact acgccacgaa tgaaagagaa ttgttggcca tagtgtgggc      3420
     cttaggcaag ttgcaacact acctgtatgg cactcgcgat attaacattt atacggacca      3480
     ccaaccgttg acattcgcgg tatccgatcg gaatccaaat ccgaaaataa aaagatggaa      3540
     agcgtatatc gatgatcata acgcaaaaat ccactacaaa ccgggaaaag acaaccatgt      3600
     ggcagacgct ctttccaggc agaacattaa tgccttacaa agtgagcctc cgtcagacgc      3660
     tgcgactatt cacagcgagc tgtcactgac ctacacggtc gaagcaacag accagccagt      3720
     gaactgcttc agaaaccaaa ttgttctaga agaagcacgt ttccgactaa agcgaagctt      3780
     ggtgttgttt cgtagtaaaa ctcgccactt aatcaatttc gccgacaaaa gcaccatttt      3840
     ggaaatgcta aaggaggtcg tgaaccccga tgtcgtgaat gcgatacact gcgatctacc      3900
     caccctggca agttttcaac acgacctaat tgttcatttc ccggctacgc aatttcgata      3960
     ctgtaaaaat attgtaatag acgttaccaa tcgaaatgag cagttggaaa ttgtcacgac      4020
     agagcacaat cgtgcacaca gggcagcgca ggagaatacc aagcaaatcc tccgcgatta      4080
     ctatttcccc aaaatgagca gcctggcaaa ggaagtagtt gcaaattgta agatatgcac      4140
     caaagccaaa tatgacaggc accctaagaa acaggagctc ggggaaacac ctattcctag      4200
     ctataccggc gaaatgctgc acattgatat cttttcgacc aataagaaac aattcttaac      4260
     gtgcattgac aagttctcaa agtttgcaat agtgcaacca gtgctgtcca gaacaatagt      4320
     ggacgtcaca gggcccctac ttcaactcgt aaatttgttc cccaaaatca agacaatata      4380
     ttgcgacaac gaagccgcct tcaattcaga gactattacc tcgttactta agaacagcta      4440
     ccacattgac attgtcaacg cggccccgct gcatagctcg tcaaacggcc aggtggaacg      4500
     attccacagc accttgtcag agatcgccag gtgtcttaaa ctagacaaaa agattagcga      4560
     tacgacagaa ttaattttga gggcaacgat agaatataat aagaccctac attctgtcac      4620
     tcaggagaaa ccggtcgaga tcctccactc gggtcccgat gatcgctgcc taggcatcaa      4680
     agacaagctg gtaaaggccc agaaaaataa catcgaaaga tgcaacccag ctaggcagaa      4740
     ccgtgttttt gaggtaggag acgaggtttt cgttaaaaac aacagaaggt taggaaacaa      4800
     gctaaccccg ttatgcacag aacaaaaagt gcaagcagac ctgggaacgt ctgttcttat      4860
     taaggggagg gtggtccaca aggacaacct caaataaaaa attcccactt ttattttcct      4920
     attcctaatt gtaagccaga tttaagtaaa tatgccgtgg tctcaatcta cgtttggttt      4980
     gcaggttcgc cctcgtaaca ctcatcatcc tggcagtggc aaatgcacgg attaccgact      5040
     tttcccacgc caagtacatt cccgtcgtag atggagatgt actggtgttc gaacatcgta      5100
     actgcctgag gcattcgagc aacctgtctg attatattta catggtagat gaaacaaaga      5160
     aattgtccgc ttcttttcca cagtcgcata tgcgcaagtt gttagacgtt gatacagatc      5220
     acctggtaaa cttgttgtcc gttttaaaaa tacaccaccg tatcgctaga agcttagact      5280
     tcctgggtac agctcttaag gtagttgcgg gaactcccga cgcctcagat tttctaaaga      5340
     tcaaaatgac cgaagctcag ctggtagatt ccaactccag gcaaataaat ataaattccg      5400
     aaacccaaat acaaataaac aaacttaccg acaccgttaa cagaattatt aaagcccgaa      5460
     acaacgactt ggtcgacacc ccgcatctgt acgaggcatt gctagcgagg aatagaatgc      5520
     tggcaacaga aatccaaaat ttaattctaa caataacatt ggctaaagct aacatagtaa      5580
     atcccacaat ccttaatcat gccgatttga gctcattaat ttaacaaaac actccaatag      5640
     ttagcttatt agaagcctct aaaattaggg ttcttcagtc cgacagcatt attcacatac      5700
     taatagccta tcccagggtg aaggtaaaat gtaagaaggt cctcgtatac ccagtatcac      5760
     actatcagac aatcctgcga ctcgatgaag acaccttagc ggagtgtgag gaagacacct      5820
     tttcggtcac cgagtgcgtg gagaccacgc acgacacttt ctgcgagcgg tcgcgacgcg      5880
     atacctgcgc ccgctcactc catgcgggaa atactgccca atgccacacg caatccaacc      5940
     accttagggc agtaatgcct atagatgacg gcatagttat catcaacgag gcaacagccc      6000
     gcgtcagcac ggatggaggc ccagaggtgc tcgtcaaggg gacgcatcta attacattcg      6060
     aacaatcagc tactatcaac ggtacggagt tcgtaaacct ccgtaaggca ataaacaagc      6120
     agcctggcgt agcaagatcg ccgctactga acatcgtcgg ccacgacccg gaacttagca      6180
     tgcccttgct tcaccgcatg aacaacgaca acctgcgctt tatccaagga ttcaaagacg      6240
     aggttgacgc cgcgggttcc cccaaacttt ggttcgtggc tggagtagtc ctcaacgttg      6300
     gactgattgg ttcgcttatc ctttttctgg cattaaggaa acggcgagcc tccgctgaga      6360
     ttcaacagac catcgataaa ctcaacataa ccgaggacgg tcataatctt agggggggag      6420
     t                                                                      6421
//
ID   GTWIN_LTR   repbase;    DNA;    INV; 495 BP.
XX
AC   AC006215;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   22-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   GTWIN_LTR is a long terminal repeat from GTWIN, a Gypsy-related
DE   endogenous.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GTWIN_I;
KW   GTWIN_LTR; LTR-retrotransposon; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-495
RA   Kapitonov V.V. and Jurka J.;
RT   "GTWIN_LTR.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; AC006215; Positions   36795   37289.
XX
CC   GTWIN_LTR is a long terminal repeat from GTWIN endogenous
CC   retrovirus.
XX
SQ   Sequence 495 BP; 153 A; 127 C; 98 G; 117 T; 0 other;
     agttaacaac taagagcaca cactattaag agcacacata taacaaatta attaatataa        60
     acaatgctga cgcgcccaaa ctgagttcag cgctctgcgc cacgaacggt cagcaacagc       120
     aatcggacac cccttatccg gggtaccgag ctatgttgca taaatgctga gtcggcttgc       180
     cgaccatggc tttatggcgt gatgcattgg agccacagta gatttacatt ttcatattct       240
     tttgtattca gtcttaagcc agagctttaa taaagagcag ctattcactc cggctcgcag       300
     ccgtaaaata tcattttatt atttgaacat tctcgctgag ccaaaaggcc agcgatcgac       360
     aaagagggca aagtcacgcc ctccgacata aacttcataa gaagatatta tcctattgtc       420
     cctggtagca gccagcacca gatctccacc gcctggagac caccggacac atcccgaagg       480
     aggaacacat taatt                                                        495
//
ID   Gypsy-100_AA-I repbase;    DNA;    INV; 5316 BP.
XX
AC   supercont1.273;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-100_AA_;
KW   Gypsy-100_AA-LTR; Gypsy-100_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5316
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.273; Positions 1459800 1465115.
XX
CC   Positions [2516-3016] - Reverse transcriptase
CC   Positions [4151-4621] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           905..5179
FT                 /product="Gypsy-100_AA-I_1p"
FT                 /translation="MASTSMAFSLEPYRKGTSFNDWYTRMKYFFRVNKIKD
FT                 EDKMAYFITMSGPVIFAEIKLLYPAGNFEDAELDDIVSKLKSRLDKTDPDL
FT                 VQRYKFSTRVQNPDESTEDFVLSLKLQAEFCGFANFKEVAILDRIIAGIKD
FT                 KNLRQRLLSEEKLSLSNAEKIIATWEVARANAGTAEPNNRDFPNLVAMVEG
FT                 GSRDQEGTAMRRLSKLYDLARQNQTSGSNDMAGNSRGPVKSRLGFRPYERT
FT                 QHTFRGGRMAYGSRAGSSRQDDQVFGQRQWQRPDYSQMICNYCGVKGHIKK
FT                 KCFKLKNLNRDAVNLVESYKPGPSADRHITELLERMRTQDSEDEEIGSDSG
FT                 ELHCMLVTSINKISNPCLVHVNIEGKELEMEVDCGASVSVISKKRYLSKFN
FT                 NPLRNYSEQLIVVNGAKLKIEGEATVFVKYNGKEALMQLLVLDCENDFYPL
FT                 LGRTWLDVFYQNWRQYFTNSLKINNLNDDNGKIALDDIQMKYSNVFTKNFS
FT                 RPINGFKAELVIKDETPIFKKAYDVPYRLRDKVGSYLDKLEKEKVITPIDT
FT                 SEWASPIIIVMKKNDEIRLVIDCKVSINKSIVPNSYPLPSAQDIFANLSGC
FT                 NIFCALDLEGAYTQLELTERSKKYVVINTMKGLYKYNRLPQGASSSASIFQ
FT                 QVMDKVLEGIENVSCYLDDVLIAGKTVDECKTKLLAVLERLANANIKVNLE
FT                 KCKFFVKELTHLGHVISGKGLKPCPDKILTIEKAKAPKNESELKSFLGLIN
FT                 YYHKFIPNLSAKLYFLYNLLKSNVRYVWDDNCQKAFVESKNLLIQANFLEF
FT                 YDPKKQIVVISDASSYGLGGLIAHVVDEVEKPISFTSFSLNSAQKKYPILH
FT                 LEALALVCTIKKFHKYLYGQHFTVYTDHKPLVGIFGKEGKNSIYVTRLQRL
FT                 ILDLSIYDFDIIYRPSHKLGNADFCSRFPLPQDVPRELDTEVIKSINFSKE
FT                 IPIDSKMIATATKDDDFLQQVMSYMQNGWPDRVDKPFADVYSNCFELELID
FT                 DCLLYMERVIIPQIYQKQILSLLHANHAGVIKMKQLARRMVYWFGINADID
FT                 KYVAECCACNSMATSHEQTEKSKWTPTTRPFSRIHIDFFFFEHHTFLLMVD
FT                 SFSKWLEIEWMKNGTDSNKVLKKLVAYFARFGLPDVIVSDNGPPFNSYSFV
FT                 NFLEKQGIRVFKSPPYNPSSNGQAERLVRTVKEVLKRFLMDPDMKELDLEN
FT                 QINYFLFNFRNYNSTKDGHFPSERIFSYKPKTVLDLVNPKKHYKKQLDIQQ
FT                 PDDETVSENQSGKIPDRSYDAIDHLMAGDEVWYKNNNPHHHARWVKATFIK
FT                 WYSHNILQISIGSVSAMAHRKQIRICGDEATRQRPNVVITRSGGSENPKGN
FT                 MDMARSEGPPNSNEEVRLPEAPNGVRKRKRLNSDSRVGTPGELDLRRSKRV
FT                 RKANRSEDFYY"
XX
SQ   Sequence 5316 BP; 1761 A; 873 C; 1149 G; 1533 T; 0 other;
     aaagatttaa aagtgacgac gaggcaaagt ggtgtttttc tagcgagtga gcagaaaaag        60
     tgcgccggcg ttcagcacca tcaacctgaa cgggtcgcag gcaggacaaa gcagcggaaa       120
     attcccatct cttcagtgga gttatcgcta cagacctgta gaggcgaaat tgctgccgtg       180
     agaatcggag tttgggattt gtgagtataa actgacgcta caaaagtgaa atatataaag       240
     aaaacgtttt cttagtgttt cggccatctt atcgggtggc gtcagttgga cgctcacaaa       300
     ggcgaaaagg cctttcattt ctatacccag ttaatgaaaa gggtggtcca aaaatcaatc       360
     ttttgttcta ttgaaaaaaa caaaacggat tattattcct tttaattgtt ttctcataca       420
     ttgtattaag agtggctatt ttcttttctt aagtttaagc aggttgaaat ttagcgcaac       480
     aaaggtgcga tacatatttt agctatccaa tatcttctat atagcgcaaa ggtgcttgga       540
     aacagctgga ttgatacggt ttcgttgacg ttcgttcccg aaggaaatcg gacactccct       600
     gtgcgaggaa ctggatccta cctttcattc gcagtcacaa ggagtggcat tggaagtatc       660
     aacctaaacg tgagtaatct caggagtttt acttaaagtg gagttacaac ccttatttgg       720
     ttcacaatta gaaatcttac tgtatttttt tctttcgttc tcattccata actattgatt       780
     tgttgaaact ttatgtgact acacaacacg atttttgcct tgtgaattgt gggatattta       840
     ccttgatttt gattcaatta attctacgac tgttataatt ttttaataag tgattttttt       900
     agtaatggct tccacaagta tggctttttc cctggaacca taccgtaaag gaacatcgtt       960
     taacgattgg tacacacgga tgaaatattt cttccgtgta aacaagatta aagatgagga      1020
     caaaatggca tattttataa ccatgagtgg gccggtgatt tttgcggaaa ttaagctttt      1080
     gtatccggcg ggtaactttg aagatgctga gttggatgac attgtgtcca aactcaaaag      1140
     ccgcctagat aagacagacc ctgatctagt acagcgatat aaattcagca caagggtgca      1200
     gaatccagac gaatcaacgg aagattttgt gctaagcctc aaattgcaag ccgagttttg      1260
     cggttttgca aattttaagg aagttgctat actagatcgc attattgcag gtattaaaga      1320
     taaaaatctc aggcaaaggc tgttgagtga ggaaaaattg tcgttgtcaa acgcagagaa      1380
     aattattgcg acatgggagg tagctcgggc aaatgccgga actgccgaac caaataacag      1440
     agattttcca aatttagtgg caatggtgga aggtggttca agagaccaag agggaacggc      1500
     catgagaaga ttatccaagc tttacgattt agctagacag aatcaaactt caggaagtaa      1560
     cgatatggcg ggaaatagta gaggtccagt taagagccgt ttaggtttta ggccatatga      1620
     gagaacacag catacattcc gtggtggacg catggcctat ggctctagag cgggcagctc      1680
     ccgtcaagat gatcaagttt ttggacaacg gcaatggcaa cggccagatt actcgcaaat      1740
     gatttgtaac tactgcggag taaaaggcca tataaaaaag aagtgtttca agcttaaaaa      1800
     cctgaacagg gatgcagtta atctggtgga atcatacaaa ccgggtccat cagcagatag      1860
     acatatcacg gaactattgg agcgcatgcg gacgcaggat tcagaggacg aagaaatcgg      1920
     aagcgattca ggtgaattac actgcatgtt agttacgtct ataaacaaaa taagtaatcc      1980
     ttgtctggta catgtcaata ttgaaggtaa agaattagaa atggaggttg attgtggtgc      2040
     atcagtttcg gtgattagta aaaagcgata tttgtcgaag tttaacaatc ctttgcgtaa      2100
     ttatagtgaa caactaattg ttgtaaacgg agcaaaattg aaaattgagg gagaggcaac      2160
     ggtctttgtt aaatataatg gtaaagaggc tttaatgcaa ttattggttc tcgattgtga      2220
     aaatgatttt tatcctttat taggcagaac atggctggac gttttttatc agaattggag      2280
     acaatatttt acaaattcat tgaaaataaa caacttaaat gatgataatg gcaaaattgc      2340
     tcttgatgac attcaaatga agtattccaa tgtttttact aagaattttt cacgccctat      2400
     taacggattc aaggcggaat tggttataaa ggacgaaact ccaattttca agaaagctta      2460
     tgacgttcct tatagattaa gggacaaagt tggtagttat ttggataaat tggagaaaga      2520
     aaaggttatc acacctattg atacgagcga atgggcctca ccaataataa ttgtaatgaa      2580
     gaaaaatgac gagattagat tagtaattga ttgtaaagtg tctattaaca aatccattgt      2640
     cccaaattca tatcctctgc catcagcaca agatattttt gcaaatttat ctggttgtaa      2700
     cattttctgt gctctggatc tggaaggagc atatacacag ttggaattga cggaaaggtc      2760
     caaaaagtat gtagtcatca ataccatgaa aggcctctat aaatataacc gtttaccaca      2820
     gggagcatct tcaagtgcat ctattttcca acaagttatg gataaagttt tggagggaat      2880
     tgagaacgtt tcttgctact tagatgacgt tttaattgcc ggaaagaccg ttgatgaatg      2940
     taagaccaaa ctactagctg tgttggagcg tttagctaat gctaatatta aagtcaattt      3000
     agaaaagtgc aaattttttg taaaagagct cacacatttg gggcatgtta taagtggaaa      3060
     aggactcaag ccctgcccag acaagatatt gaccatagag aaagcaaagg cgccgaaaaa      3120
     tgaatcggaa ttgaagtcgt ttcttggact gataaattat taccataaat ttattccaaa      3180
     cctgtccgct aagttatatt ttctatacaa tttacttaag agtaatgttc gatacgtgtg      3240
     ggatgacaat tgtcagaagg cctttgtgga aagcaaaaat ctgctaatac aagccaattt      3300
     tctagagttt tatgacccaa aaaaacagat agtagttatt tcagatgcct caagctacgg      3360
     gttagggggt ttaatagcac atgtggtaga cgaagttgaa aaacctataa gctttacgtc      3420
     attttctcta aattcagcgc aaaaaaagta ccctatctta catttggagg cactagcctt      3480
     agtgtgtaca attaaaaagt ttcacaaata tttatatggg caacacttta ctgtttacac      3540
     agaccataag cccttagtag gaatttttgg aaaagaaggg aaaaattcga tttatgtgac      3600
     gagactacaa cggttaatac ttgatctatc tatatacgat ttcgatataa tatacaggcc      3660
     ttcacataaa ttgggaaatg cggatttctg ttcgagattt cctttgccac aggatgttcc      3720
     tagagagtta gacacagagg taataaaaag cataaacttt agcaaagaaa taccaatcga      3780
     ttcaaaaatg atagctactg caactaaaga tgacgatttt ttacagcagg ttatgagtta      3840
     catgcagaat ggctggcctg atagagttga taaacctttc gcagatgtct attctaattg      3900
     ttttgagctt gaattgattg acgattgtct tctctacatg gaaagggtca ttatacctca      3960
     gatttatcaa aagcaaattt tgtcactttt acatgcaaat catgctggag tcatcaaaat      4020
     gaaacaacta gcacggcgaa tggtttattg gtttggaata aatgccgata ttgataaata      4080
     tgtagcagaa tgttgtgcat gtaacagtat ggcaacatcc catgagcaaa cagagaaatc      4140
     caaatggaca ccaacgacaa gacctttcag tagaattcat atagatttct tcttttttga      4200
     gcatcacacg tttttactaa tggttgatag cttttccaaa tggttggaaa tagaatggat      4260
     gaaaaatggt acagatagca acaaggtttt gaagaaattg gttgcatatt ttgcaagatt      4320
     tggattgcca gatgtaatag tgtcggacaa tggtcctcct ttcaactcct acagttttgt      4380
     aaacttccta gaaaagcaag gtattagagt gttcaaaagc ccaccataca acccatcaag      4440
     taatggacaa gccgaaaggc tcgttagaac ggttaaagag gttcttaaga gattcctaat      4500
     ggatcctgat atgaaggagt tggatctgga aaaccagata aactatttcc tatttaattt      4560
     tagaaattat aattcgacga aagacggaca ttttccgtct gaacgaatat tttcgtataa      4620
     accaaagact gtattagact tagtgaatcc aaagaaacac tacaaaaagc aactagatat      4680
     acaacaacca gatgatgaaa cggtttcaga aaatcagagc gggaaaattc ctgatcgttc      4740
     ttatgatgct attgaccatc tgatggctgg ggatgaagtg tggtataaga ataataatcc      4800
     ccaccatcat gcccgttggg taaaggccac atttattaaa tggtactctc ataatatttt      4860
     acagatatcc attggaagcg tcagcgcaat ggcgcaccgg aagcaaatta ggatctgtgg      4920
     agatgaggca accaggcaaa ggccgaatgt ggtgattacg agaagcggtg gtagcgaaaa      4980
     cccgaagggg aatatggata tggcaaggag cgaaggccca ccgaattcta acgaggaagt      5040
     gaggctaccc gaggctccca atggagttag aaagcgaaag agactgaatt cagacagcag      5100
     ggtcggaaca ccaggtgaac tcgatctcag acggtctaaa cgagtgagaa aagcaaatcg      5160
     ttcggaagat ttttattact agtttcggat ggtcattcat aattacagtt aaaaagattt      5220
     catgtgaatt tgaaacaaat ttattgtata agttttttat ttttgattat ttatcagttc      5280
     tgattatata gcataagctc tctaagggag aagaat                                5316
//
ID   Gypsy-100_AA-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   supercont1.273;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-100_AA_;
KW   Gypsy-100_AA-I; Gypsy-100_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.273; Positions 1459545 1459799.
XX
SQ   Sequence 255 BP; 79 A; 65 C; 49 G; 62 T; 0 other;
     tgttgtatac cttgaaattg atataccttg attaatgatg tcgaatgaca gttcatttac        60
     cgcgcgttcc cctacgcgcg caagcgaacc gaagggttcg agccaaaaga aaaatatacg       120
     gacaagcagt ccactcagaa acacaactca gtgcagacgt tttagcagca aggaaaaccc       180
     ccctaaactt cggtctttaa ccccagtatc cgcccgtgaa aattgagtcg taagtttcca       240
     ctttagcttc aatca                                                        255
//
ID   Gypsy-100_CQ-I repbase;    DNA;    INV; 6850 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-100_CQ_;
KW   Gypsy-100_CQ-LTR; Gypsy-100_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6850
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 579-579 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4846-5322] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3919..5694
FT                 /product="Gypsy-100_CQ-I_1p"
FT                 /translation="MANYYRRFINNFSELTSPLTDLLKNKPKKVEWTAEAD
FT                 LAFRTIKEKLISAPVMSNPDFKLPFTVQTDASDHAIAGVLTQVQNGEEKVI
FT                 AYHSEKLKGAELNYHAAEKEGLAALRCIEKFRCYIEGSKFTLVTDSSALTF
FT                 IMRSKWKTSSRLSRWSIILQQYHMIIKHRKGKENVVPDALSRSLEIAEIDD
FT                 GSDWYSKLYASIKRDPENYIDFKIENNILYKLVSSQSDVLDYAFDWKQCVP
FT                 TSKRADILVKEHDEAFHVGYEKTVAKIKERFYWPRMAAEIKKYVMNCETCK
FT                 RIKHSTISVVPEMGNQRITTKPFQILTIDYIQSLPRSAKGNAHLLVLMDVF
FT                 SKYCLLVPVRKICASSVCEILEQFWFRRLSVPQYLISDNATTFQSKEFQQL
FT                 LNKYEIQHWASARHRSQANPTERLNRTINAMIRSYVRENQRLWDTRISEVE
FT                 FVLNNTVHATTKYTPYRVIFGHEIVTKGSEHRLQSSLELSDEERMERMQIV
FT                 SRSVHQRVVDHLRKAHEETKRRYDLRHKRYAPTFDVGQKVYKRTFRQSSAG
FT                 DHFNAKLGEVYEPVVILAKKGSCAYEVGDDAGKSLGVFSAGDLKA"
XX
SQ   Sequence 6850 BP; 2238 A; 1210 C; 1443 G; 1951 T; 8 other;
     tattggcgac caacaaaaaa aaagttaata atttcaatta ttcactttat tttggaggtt        60
     aacgaggggg gagaatctgg tttgaatcgg caaaatcggt cttcggattg gcgtcggtgt       120
     ttctggtaaa cccacttgct tttaaactgt tcaatttaat gtagataatt gtagttctga       180
     agtgaattct tcaactgata ttataaacca cttaatttgg gtggcaatga ttgttcaaaa       240
     gtaaattaat cgctcaataa cttgcaattt tggcgtgatt cgatcgaaaa ccgcatgtaa       300
     aatatttatt ggttataatt tgtcgtgaaa tcgtttgtct caattaattt attaaatttg       360
     gtgttcattt gtacatttta aggtgtgaat cattttgcat gagctgtatt ttattctatt       420
     tattttattt attattttaa actgtttaag tgtgtttttt tttctatcca aaatggatca       480
     atttattcgt caatattttg atatgaacac tgctcatttg ttggaagacg agctgaacaa       540
     cgagctgacc attcgcaata ttgagtttgg ttcggagtct cgatcagctt tagagagaag       600
     attaagagga caattaaaag aagaaagaga gtccaaagtc ttaacatttg agtacgaaaa       660
     aggatgggat ttattgatcg atgaactgga attatgtgat aataaaattc aggagatcaa       720
     aaatatttta gaaaacagaa cagctwaaag tgtcccagat caaaaattca aaacacgatt       780
     acttcattta tttatccgca tgcttcgagc taaagttcac actaccgagg acgctgatat       840
     taatacgatt aaggaaatgg taggagtttg cgctaaacta ttaagaaatt atttttcacc       900
     gacttcaccg tttgaggaga tacgagcggc agaagcagaa attatcaatt ctagcatacg       960
     ccaagcgcga gatgaactcg acaaagataa gaccccaact gagatcacta ctcagaacaa      1020
     tggtaacgta acccctattc cgtccaaatc aaattcaata tattcgggag tgggaactga      1080
     acaggaagaa gtagaggaag aagaagaaaa ggaaaaagat gatgaagaag aggaaggaaa      1140
     cgtcgaagaa gagggagatg cgggaaaaag gaatgagcaa caaagcgaat taaataagtt      1200
     gcgagaaatt aacgctgagc ttagaactat tgtkgatcaa ttattagaga gaatacacaa      1260
     attagaaatt gaaaattcca aaccagatga tgtcatgaaa aatagcaccc aatttaacaa      1320
     tcagaataaa cctaagttgg aaggcccatc aaaaccaaaa tttagttaca aagatttttt      1380
     aaattggctg gtcaaagatg aaaattcagg tgaacacagt aacaacaatt caaatggaaa      1440
     tgtcaaagat aataaaaawt ttcataaaca accaaaaccg agttcctcaa gccataaggg      1500
     atcgggagga gaagtgactg gaaagcggtt ccctgtgcac aagtggaaaa ttaggtacga      1560
     tggctctgat ggaggtcgtc gcctgcacga ttttttgaaa gaagtagaat ttaatgcaag      1620
     atccgaaggt tttaacaaac aagaattgta caattcagct catcacttgt ttgaagggaa      1680
     agctaggtca tggtttatgg agattaatgc aaataatgag ttagaaactt gggaaaatgt      1740
     tgtcagtgag ttgaaactag aatttcttcc acctgatctt gattattttt atgaacggca      1800
     gttgcatttg cgtaagcaag ctgcaaggga aaagtttcaa gattattatt ttgatatgat      1860
     tcgactcttt agaaatttgt ctagtccgat ggaggaggac agaaagttta aaattatttt      1920
     tcgtaatgct cgaagcgagt acaaaagcgc tatgctagct gcaaacgtta aaactcttcc      1980
     cgcgatgaag gaatttggga aaaactttga cgccatcaac tggcaatggt acactaaggg      2040
     tgagaaagaa ggtccccgag gaacacgaac aaatgatagg cagataaacg aaatcaaaac      2100
     agagagaaga aacccaaacc cgaacaatgc tggaaataat caaaacaata atcgtccgtg      2160
     gaataaggga gagaatttct cgagagagtt tagaaacacg aatcgtccaa atccaaatta      2220
     cagaaatggt cagaataagc agaatccacc aactaaacct gaaaattcgt tgcaaaaaga      2280
     gcccgagcgg aagccattgc aaaaaactag tcaacctgat gatcaaaatc cagggcctag      2340
     tacaaatcta aatactttgg aaaagatttt aaagtcgtat gtcccgttac gtaaaggtac      2400
     ttgttttaat tgccataatt ttgggcacaa cttttatcaa tgtaaacagg aaaagcaaat      2460
     attttgtgaa gagtgtggtt ttcctggttt tttaaaatgt gattgtccgt tttgtccaac      2520
     aaaaaactca gagaaggctg ctcaatgagg cagagtagtc gaaaggaatt acctgaaagc      2580
     cctcttgaag aaaattccac caaaagtatt cttacgcagc tcggttacgc gcacgtggwg      2640
     gctgaatcta acgatgatgg ggaggtcaac acaatttttc tccacccgca tggtgataac      2700
     aggccatttg tgcgaatcga cttgctagga atccaaataa ctgcactttt agacagcggg      2760
     gcaaatagaa acattttagg gaaaaattca cataaactcg tcacgaattt gaatttgaac      2820
     tgttcaccgt csgacatgtc tttgattact gccgaaggac atccagtaga agttgcagga      2880
     gagattgata ttccagtttc ttttaacgga actacaaaga tcgtctcttt tgtagtcgcg      2940
     ccctctctca agcgacagtg ctatcttgga atgtcgtttt gggaccaatt cggtatctat      3000
     ccttctctcc gagagtcgtt tatcgaaaca attgatgact ctgaggagca gatcgatgat      3060
     gaagttctgt tgactcccaa acaacaagcc aagttagaac aaattaaatc tttatttctg      3120
     gtaccaaagc ctggtgatat cggctgtaca aagttgttaa ctcacactat tgaacttagt      3180
     gacgaatacc gtgacaaacc accaattaga caaaacccat acccatggag tcccgaagtt      3240
     caacgaaaaa taggaattgc tttagataat atgattaggg atgatattgt agaaccgtct      3300
     acttcagaat ggtctcaacc agtagtacct gtttcaaaaa gagacagcga tgctgtacgc      3360
     ctctgtctcg acgcgagaaa gctgaatgag cgcactaagc gtgacgctta tccgcttccg      3420
     catcaaaatc gcattttaag cagacttggt tcttgcaaat atcttaccac cattgatcwt      3480
     agtcaagcct ttctacaaat accgcttagc cccgaatcta ggccatttac agcattttcc      3540
     atacctggac gtggattgtt tcattttaag aaactaccgt tcgggttagc aaacagtcca      3600
     gccagtttga gcaaattaat ggacaaagtg ttaggattcg gtgtgctcga gccaaatata      3660
     tttgtgtact tggatgacat agttgtcgca agtcacacgt ttgaagamca cgttgaacac      3720
     ttgaaagagt tagctagaag gttgaatgaa gctgatttga gaatcaattt acaaaaatcc      3780
     aaattttgtg tcccggaatt gccctactta ggttacattt tatcaaaaga cggtcttagg      3840
     cccaatcctg atcgcgttca cgcgattgtt gtgtatgagg tccctaagtc tgttcgtgcg      3900
     ttgcgcagat ttctcggtat ggcgaactat tatcgacgat ttatcaataa tttcagcgaa      3960
     ttgacatcgc cactcacaga tctactcaaa aacaaaccta aaaaggttga gtggactgct      4020
     gaggctgatc tggcattccg gaccattaag gagaaattga ttagcgctcc tgtaatgtca      4080
     aaccctgatt tcaaattacc ttttacggtg caaaccgatg caagcgatca cgcaattgcg      4140
     ggggtgctta ctcaagttca gaacggagag gagaaggtca tagcgtatca ttcagaaaag      4200
     ttaaaaggcg cggaacttaa ctatcacgcc gcggaaaagg agggattagc agctctgagg      4260
     tgtatagaaa agtttcgatg ttatatcgag gggagtaaat ttacactagt gaccgactcg      4320
     tcagctttaa cattcattat gcgctctaaa tggaagactt cttcaaggtt gtcacgttgg      4380
     agcataatct tacaacaata tcatatgatc ataaaacacc gaaagggaaa agaaaacgtt      4440
     gttccwgacg ctctctcccg gtctttagaa atcgcggaga ttgacgatgg tagcgattgg      4500
     tattctaaac tttacgcttc tataaaacga gatcctgaaa attatattga ctttaaaata      4560
     gaaaataata tcctttacaa actagtttct tcacagtccg atgtattaga ttacgcgttt      4620
     gactggaagc aatgtgtacc gacttctaaa agagcagaca ttttagtcaa agaacatgat      4680
     gaagcattcc atgttggcta cgaaaagact gttgcgaaaa ttaaagaaag gttttattgg      4740
     ccacgaatgg cagctgaaat taagaaatat gtaatgaact gtgaaacttg taagagaata      4800
     aaacattcaa caatttcggt tgtcccagaa atgggcaatc aacggattac aaccaaacca      4860
     tttcagattc taacaatcga ctacatacaa tctcttccga ggagtgccaa gggcaatgca      4920
     catctgctcg tcctgatgga cgtgttctct aagtactgtc tgttggtccc tgtccggaag      4980
     atctgtgcaa gtagtgtttg tgaaattcta gaacagttct ggttccgtcg tttatctgta      5040
     cctcagtacc tgatatcaga taacgcaaca acattccaat ctaaagaatt tcaacaacta      5100
     ttgaacaaat atgaaataca acattgggct agcgcaagac accgaagtca agcgaacccc      5160
     acggaaagac tgaataggac gataaatgca atgattagaa gttatgttag ggagaatcag      5220
     agactttggg atacgcgaat ctccgaggtg gaatttgtgc tgaacaacac cgttcacgcg      5280
     actaccaagt acaccccgta cagggtgatc ttcgggcatg agatcgttac caagggctcc      5340
     gagcatcgac tccaatcctc actggaattg agtgatgaag agaggatgga gcggatgcag      5400
     atcgtcagta gatcggttca ccagagagtt gttgaccatc tacgaaaggc gcacgaagag      5460
     acgaagagac gttacgattt gaggcacaaa cgttacgccc cgacctttga cgtcgggcag      5520
     aaagtgtaca aacgtacgtt ccgtcagtct tccgccggcg accactttaa cgcgaagctt      5580
     ggagaagtgt acgaaccggt ggtgattctc gcaaagaaag gttcttgtgc gtatgaagtt      5640
     ggtgatgacg cagggaaaag tcttggtgtc ttttccgctg gcgatttaaa agcataaatt      5700
     tttgcatgtt ttatgctgga agtgatagaa agttggtgta aacgatttgt gatgggaaag      5760
     ttgagagccg atttctgtta tcagcatgta gaaagtcggt tcctcacacc gtttcagcta      5820
     ttgtttcgac ccagccgttc ttatcatgga attgtatccc gggatgatga gcaagaaaag      5880
     gagaggaata tggataacga ttggagatgg aataattgaa ggtcagtttg tctattgtaa      5940
     aagggtacca aaaacaaaac agtaaagctt tacaaatttt atactcttct gtgatatatt      6000
     tattttcttt tgtgtctttt aatcgcattg tccttgatcg taaacagttc ttttggtcat      6060
     ggaatagcga gttgtgggcg gacaaaatga atttatttat ttatctctga gtttttgtta      6120
     cagaaaatgt ttgtgggtag tttttgaagc accagtattt atgtttttat gctgtattat      6180
     tttaacttcg tcacaaggac gcttgtgaac gttgaatcca ttgaaggagg agcaatttta      6240
     aattgtttct tatttataca ccaccaaatt aagtacaaat acaccaaatt tgattccctt      6300
     ctgtttaaga atccacgtac gaagtcaacc ctatttaact gatcttggcc aatcttttaa      6360
     agtaaaaatc gatacatttc gacttcgtat ctgcgcaaaa attgttcgtt ttcttaaact      6420
     ggatcgaatc aaatacgcaa cataagtaaa tttcgcgata tgaattgaaa aactaaggcc      6480
     atagtttgca gtgtcactct agttagtgct cacaagtgca acataatacc acccaaaacg      6540
     aatccgcgcg cttaattaat gaaaatttaa atttgtagaa gtattccgga atacagtaag      6600
     aattcatatt tttttttgta attttaatgt gtaatttatt gtttgatgtt tattgtttgt      6660
     taatgattgt ttcccatctt ttgatgcgag tataatattt cagtcgaaga tcatttcgtt      6720
     tcttcactta tgcacagttt gaacggattg attgtaaggg tacagttgcg gcattttgtt      6780
     tgattctaat cttattcaaa aaacaaaaaa aatatctaac aatatttttt ttccccgagc      6840
     ggtgcggtag                                                             6850
//
ID   Gypsy-100_CQ-LTR repbase;    DNA;    INV; 1191 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-100_CQ_;
KW   Gypsy-100_CQ-I; Gypsy-100_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1191
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 580-580 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1191 BP; 320 A; 311 C; 317 G; 242 T; 1 other;
     tgtgaccaac caccttggtt tgcccacatc gtctcatgaa ccttccctga acactcgggt        60
     catttcaaga ggtagaccac ttagaaaagc tagagttagg gtagattttc aaccaagaaa       120
     cgcaaaataa gcgcaacatt tgcaaatata ataaatctgc accaattcgt caaacaacag       180
     tcgttttgaa tttaaatagc tagaaaaagt aatagaatgg cacaagmgat ttgcatcaca       240
     catcacatta ggcattgttt tcagtagcga caacttggct actcttatca acacccacga       300
     aacgcagaga tgaacgcaac ctcgacttct gcgtgatctt cgagggctct tcggagtctg       360
     gacgggatcg actcgttcac ttgcttgagc accaggaagg agtccacacg ctcacgaaga       420
     tctaacacca gtgagtagaa ccgcgattta agaacctccc acgaggtcga ggaagtcccg       480
     aaagccaccg tctacggctg agggattgcg cgatcgtacg gccatccgta acctggccaa       540
     gtcccgcgag ttctagtgtt cgaccagcac gctaattacc ctggattgcc ccttggcaag       600
     tgttcctgct agccacgagc taagcatcgg tgggctccgt tacacatagc caccgccacg       660
     aaccgcaccg gagtgtgcct ggacgtgcac gacaaccacg cacggtcctc gaacgtcccg       720
     gatcgtctac tacgggtacg gaagcgagta cgagagacgc cgtgtcacga ggttccggac       780
     gggaacgtga cttcggcgaa tactacggtg ttccacgccg gaacgcggga agtcctgcaa       840
     cacgaggagg agacggcagg caacgagaag tcccaggtcg aggacgggga cggagcgtgt       900
     tcgagatccg accacccacg cgtcggggaa cgcaccagat cccgatgtcc acgagcgacg       960
     ccgagagtag ctgatcagcg ggcccataca ctgacaccac acaagtaagt ccggttaggt      1020
     agcgtaggga gtaggttgtt agggcagatt ctcaaataaa cgtgccatga aaacgtagaa      1080
     gtggtctttt ccctctttgc tttcaaatga agattaactg agtgagccga ccctgggtgt      1140
     tcttgggggg ttttgtgcga ctgagcgggt tgtaacaaag ggaaagttac a               1191
//
ID   Gypsy-101_AA-I repbase;    DNA;    INV; 5743 BP.
XX
AC   supercont1.55;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-101_AA_;
KW   Gypsy-101_AA-LTR; Gypsy-101_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5743
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.55; Positions  886151  880409.
XX
CC   Positions [4180-4656] - Integrase core
CC   'ATCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1876
FT                 /product="Gypsy-101_AA-I_2p"
FT                 /translation="MNTHFSIFSPLQSVRNEVMQEFVRSVSNLRMGIDQEN
FT                 NNSRTVDNQTQRSSKTAGEQVPGPSTSDREESDVGAVGLPESSSRRVLKSY
FT                 GKAIEKDVGSISGAIAAALYPFALQSNHAGGSRNEGSHDSNRSEKFIRKIS
FT                 LNKQSKSRPNPLAETSDSVAESDSQSSASSDPPVERYREKRHSRRTQTKSK
FT                 PVSEWNIKYDGKDHGQSLMKFIKEVEFYAKSENVSKRELFRSAIYLFRDQA
FT                 KSWFMSGVENEDFANWDELVTELKREFLSPDHDHVNEIKAISRKQGPKERF
FT                 SDYLSELQKIFNSLTKPMSERKKFEIVYRNLRSDYKGHAVASNIDNLADLK
FT                 RFGRQLDSTYWYKYAQNIQENNASRNKAQVNELVRETKYQPKSSDENSKKS
FT                 FKSRNFYRSRKEGPSEEDQPANNPSRNNPKNSKSEAKKPEEPRAPQSGYDT
FT                 YVPPQEGICFNCRGYGHHHTQCNQPRYKFCLRCGLHQVETKNCPYCAKNFN
FT                 "
FT   CDS           1819..5040
FT                 /product="Gypsy-101_AA-I_1p"
FT                 /translation="MWFTPSRNQKLPILCKKLQLDYLRGQVSPKVPKNPSF
FT                 PTLQDNLHNSGYNRVQSSDYSAPEEAQLEELFVRVENDDRPFVQISVFDTP
FT                 IIGLLDSGAHRSILGVGSLKLVKTFKLKLFPASIDLVTASGQKLEVVGYVN
FT                 LPMCFNGQTKIMATLVVPNLKRRLLLGTDFWRAFGIVPTVHSAAVEELDET
FT                 LEEPSLSNDQLQELESIKSQFKVAIDGQLDTTPLITHRIELTEEAKQLAPV
FT                 RINPFPTSPKRQDQINKELDSMLEAGIIERSYSNWALRLVPVDKPDETVRL
FT                 CLDARKLNERTLRDSYPLPHADRILSRLGPCKYISTIDLSKAFLQIPLHPK
FT                 SKKFTAFSVLGRGLFQFTRMPFGLVNSPATLSRLMDRVLGAGELEPSVFVY
FT                 LDDIIVLSETFEEHLTLLRDVAARLNRANLSINIQKSKFCVSELPYLGYIL
FT                 TNKGLKPNPDRVEAIINIERPNSIRALRRFLGMCNYYRRFIAQYSEIVRPL
FT                 TDLLKNKPKSIRWNEFAESSFTKIKELLINAPLLANPDFNQPFSIHCDASD
FT                 TAIAGVLTQEREGIEQPIAYFSRKLTGPEQRYFATEKEALAVLKSVEKFRC
FT                 YVEGSKFTVITDASALTYILRSSWRTSSRLCRWSIELQRHDMIIKHRRGVD
FT                 NVVPDTLSRSVEVLVLNQKGSDWYTNLLKNVHENPEKYKDFRVDNGVLKKL
FT                 VSTQGDALDYHFEWKVCVPKDMRENVLVEEHDDALHLGTDKTMARIKKKYY
FT                 WPNIANDVRLHIRKCSTCLESKPSNRAQNPVVGSPRLAAKPFQIVALDFIQ
FT                 SLPRSKTGKAHLLVIMDVFSKFCLLFPVRKISAPQVCEILENNWFRRYSTP
FT                 EIIISDNASTFLSGNFKDLLQKFHVQHWTNPRHHSQANPVERLNRTINACI
FT                 RTYARSNQTLWDTRVPEIEYALNTTPHGATGFSPYRILFGHEIVGRGDEHR
FT                 VDRDLRELSDTERLEKKLQIDENIHSLVSKNLKKQFEKNSHNYNTRHKTFA
FT                 PVYTVGQKVYKRNFRQSSAPHSYNAKLGPCYLPCTVVARVGTNTYELADET
FT                 GKSIGVFSAADLKPGEC"
XX
SQ   Sequence 5743 BP; 1765 A; 1291 C; 1244 G; 1443 T; 0 other;
     aaattggcgc ccaacaacaa aacattaaaa tagcattcgt tcaaaaaatt gaattttcaa        60
     aaaagaaccc cgtgttgagg ggggcaaaac aaattttgtt ttattagagc ttagagatcg       120
     attgaaagaa gagaaggatt taaataattt ggatgttgat tttcttaggt gcaatcaaac       180
     ggtagatgca gagattaaag tgatagatgc taacgtagaa gaaattcgta gatatctgac       240
     gaacgaagaa cgttttgaag gtttcaaaga cagcttgaag tctcgacttg tgcattattt       300
     tgcgcgagtt cgccgagctc aagagcacgc tgagacggac gaagacctga ctgatttcga       360
     taagctcctc tgtgcaatac gagggcttat gaatacacat ttttcgatat tttcgccgtt       420
     acaatcggtg agaaatgagg ttatgcagga gtttgtacga tcggtttcga atttgagaat       480
     gggaatcgat caggagaaca ataattctag gaccgtagac aatcaaactc agagaagctc       540
     gaagaccgcc ggagaacagg tgccgggtcc gagtacttca gatagagagg agagtgatgt       600
     aggagcagta ggtcttccgg aatcttctag ccgtcgcgtt ttgaaatctt acggaaaggc       660
     aatcgaaaaa gacgtcgggt caatttcggg agcaatcgcc gctgcgttgt acccattcgc       720
     gctacagtca aatcatgctg gcggttctcg taatgagggc agtcatgatt ccaaccgttc       780
     ggaaaagttt attcgtaaaa tctctctcaa taaacaatca aagtctaggc caaatccact       840
     ggctgagaca tcggattcag ttgccgagtc cgattcgcaa agttcggcgt cgtcggaccc       900
     tcccgttgaa aggtatcgag agaaaagaca tagtcgtcgc acacagacaa aaagtaaacc       960
     ggtttcagag tggaacatca aatatgatgg aaaagaccac ggtcaatcac tcatgaaatt      1020
     cataaaagaa gtcgagtttt atgccaagtc agaaaatgtg tccaagcgag aattgttccg      1080
     gtccgcgatt tatttgttta gggaccaggc caagtcttgg tttatgtccg gcgtggaaaa      1140
     tgaagacttc gcgaactggg atgaactcgt gacggagctc aaacgtgagt tccttagtcc      1200
     cgatcacgat cacgtgaacg agattaaagc catatcgcgg aaacaagggc cgaaagaacg      1260
     gttttcagac tatttgtcgg aactacagaa gattttcaac tctctcacga aaccgatgtc      1320
     tgagagaaaa aaattcgaga tcgtgtatcg caatttaaga tcagattata agggccacgc      1380
     ggttgcgtcg aatatcgaca atttagccga cctgaaaagg tttggccgac aattagactc      1440
     cacctattgg tacaaatacg cccagaacat ccaagaaaat aacgcgtcgc gaaataaagc      1500
     acaggttaat gagctggtcc gtgagaccaa gtaccaacca aaatcttcgg atgaaaattc      1560
     gaaaaaatct ttcaagtctc ggaacttcta tcgatcgcga aaggaaggac ctagtgaaga      1620
     agaccaaccc gcgaataatc cgtcgcgcaa taatccaaag aactcgaaat ctgaggctaa      1680
     gaaaccggaa gaaccaagag caccacagtc gggctacgat acgtatgttc cccctcagga      1740
     gggcatatgc ttcaattgcc gaggctacgg gcatcaccat actcagtgta accagccacg      1800
     ttacaagttt tgtctacgat gtggtttaca ccaagtagaa accaaaaatt gcccatattg      1860
     tgcaaaaaac ttcaactaga ctacctgcga gggcaggtca gtccaaaagt acccaaaaat      1920
     ccctctttcc caacgctaca agacaatctc cataattcgg gctataatcg agtacaatca      1980
     tcggattata gtgcccctga agaagcccaa cttgaggaac tgttcgtgcg tgtagaaaat      2040
     gacgatcgtc cgtttgttca aatctccgta tttgacactc ctattattgg attgctcgat      2100
     agcggagccc atcgaagcat attaggtgtg ggatcgttga agctcgttaa aacttttaaa      2160
     ttaaaattat ttccggctag tattgaccta gtaacggcca gtggtcaaaa actggaagtc      2220
     gtcggctatg tcaatctgcc catgtgcttc aacgggcaga ccaaaataat ggctacttta      2280
     gttgtaccaa acttgaagag aaggctattg ttaggtacag acttctggag agcttttggg      2340
     attgttccta cagtccactc agcggcagta gaggaactgg atgagacgtt ggaggaacct      2400
     tcattgtcaa acgaccagct tcaagaatta gaatctatca aaagccaatt caaagttgcc      2460
     attgatggcc aattagacac caccccattg atcacccatc gcatcgaact gaccgaggag      2520
     gccaagcagt tggcaccggt tcgaataaat ccgttcccta cgtctccgaa acgtcaggac      2580
     cagatcaata aagagctgga cagtatgcta gaagcgggca tcattgaacg ctcctacagc      2640
     aactgggctc taaggctagt cccagtagac aaacccgacg agacagttcg actttgccta      2700
     gatgcgcgaa aattaaatga acgcaccctt cgagattcct atccacttcc acatgcggat      2760
     aggattctta gtcgattagg tccctgcaag tacatctcga caatcgactt gtcgaaggca      2820
     tttttgcaaa taccactcca tccaaaatcg aaaaagttca ctgcgttttc cgtcctagga      2880
     cgagggctct ttcagtttac ccgaatgcca tttggtttgg tcaacagtcc ggcaacacta      2940
     tctaggctga tggaccgggt cctgggtgcg ggtgaacttg aaccaagcgt cttcgtctat      3000
     ctagacgaca ttatcgtcct aagcgagacg ttcgaggaac acctcacgtt gcttagagac      3060
     gtagctgcca ggttgaatcg agccaacctc tccattaaca tacaaaaatc aaaattttgc      3120
     gtctcggaac taccttactt aggatatatt ttaactaaca aaggtctgaa acccaatcca      3180
     gatcgagtag aggcgataat caatatagaa cgtcctaaca gcatacgtgc cttgcggcgt      3240
     ttcttgggca tgtgtaacta ttatcggcga tttattgccc aatatagtga aattgttcgc      3300
     ccgctaaccg atttactaaa aaacaaacca aaatcgatcc gatggaacga gtttgcagag      3360
     tcatcattca ccaaaatcaa ggaactgctg ataaacgcac cattgttagc taatcctgat      3420
     tttaaccaac ctttctccat tcactgtgac gcaagtgaca cggccatcgc cggtgtcttg      3480
     acccaagagc gagagggtat tgaacaacca atcgcttatt tttcccgaaa attaactggc      3540
     ccagaacaaa gatatttcgc cacggaaaag gaagctttgg ctgtcctaaa atccgtagaa      3600
     aaattccgat gctacgtgga aggatcaaag ttcacggtca taaccgatgc ttctgctctc      3660
     acatacatct tacgcagcag ttggcgcacg tcatctaggc tctgtagatg gagcatagaa      3720
     ctccaacgtc acgacatgat catcaagcac cgacgaggtg tggataacgt ggtacctgat      3780
     accctgtcaa gatcagttga agttctagtg ctcaatcaaa agggttcaga ttggtacacc      3840
     aacttgctca aaaatgtcca tgaaaatccg gaaaagtaca aggacttccg agtggataac      3900
     ggcgttctaa agaagctcgt gtctacccag ggagatgccc ttgattacca cttcgaatgg      3960
     aaggtctgcg taccaaagga tatgcgggag aatgtcctag ttgaagagca tgacgacgct      4020
     ctccatctag ggacagataa aaccatggct cgaatcaaaa agaaatatta ctggccaaac      4080
     attgcaaatg atgtgcgtct gcacattcgt aaatgttcaa cctgtcttga gagtaaaccc      4140
     tccaatcgag cacagaatcc ggtggttggt tctcctagac tggccgcaaa accgttccag      4200
     attgttgctc ttgattttat acaatcatta cctcgtagta aaaccggaaa agcacattta      4260
     ctggttataa tggatgtatt ttccaaattt tgcttgcttt tcccggtgcg taaaatcagt      4320
     gctccacaag tgtgcgaaat tctagaaaat aactggttcc gccggtactc cacaccagaa      4380
     attatcatat cagataatgc ttccaccttc ttgtcaggga acttcaaaga cctgttacaa      4440
     aagtttcacg tccagcactg gactaaccca cggcaccaca gccaagcgaa tccggttgaa      4500
     cggctcaacc gcactataaa cgcctgcatt agaacgtatg ctaggtcgaa ccaaacacta      4560
     tgggacacca gagtgcccga aattgaatat gcgttaaaca ctactcccca tggagccacg      4620
     ggatttagtc cctatcgaat cttattcggc cacgaaattg tgggtcgagg cgacgaacat      4680
     cgcgtagatc gagatttgag agaactttcg gatacagaaa gactggagaa gaaactgcaa      4740
     atcgatgaaa atattcattc attagtcagc aaaaacctta aaaaacaatt tgagaaaaat      4800
     tcacacaatt acaatactcg ccacaaaacg tttgctcctg tgtacaccgt cggtcagaaa      4860
     gtgtacaaga gaaacttccg gcaatcttcc gcaccacaca gctacaatgc gaagctaggt      4920
     ccctgctatc tcccgtgcac cgtcgttgct cgcgttggca ccaacaccta cgaactagcc      4980
     gacgaaactg gtaaatccat cggtgttttc tctgcggctg atttgaagcc cggtgaatgc      5040
     tgaaaaacaa gtaaaaaaaa ttcaataaac tcaacatctt cgatacgtat caagcaaaac      5100
     ttccttgtgt ttagccatgg ccaggctgga catccgttac acctgtaaca aaaacaaaat      5160
     agtatattag tcctacaatc aaaccacaat gaaacactgt tcggtgacaa agatttttct      5220
     cagaaaacaa cctcgaatgg cttgcttcat tgaatgcatt tcttcaatgg ctgtaagaaa      5280
     tgtgaattga atggtacctc agatgatgat tgattaacag ctattgtttc atgcgcgcac      5340
     ctttttctct gatgcattca atggaaagac ccattcagat cagatttcac tgtaaatagc      5400
     agtttaaatt tacttacctg ttctagtaac tgcagttgaa aacttttgca actcgtccac      5460
     atcgtccatt tgttgttttc gttctcacgt ttgcgatagt ccaatccgtc acaccgtttg      5520
     acagttcttg tgtctttgtg ttggtgagtg actacctggc atatctttcc aaatgagtga      5580
     aagagtataa cgcataatgc ccagtgctgc cagatctatg tgcaacacat cttgttttca      5640
     aaacggaaaa ttaaaatgtt gttgattttt atgtaatgtt tcacctcttg ctcagtcaaa      5700
     atgaatgagt ttcattcatt ttgaactggg aggacggggt aaa                        5743
//
ID   Gypsy-101_AA-LTR repbase;    DNA;    INV; 1754 BP.
XX
AC   supercont1.55;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-101_AA_;
KW   Gypsy-101_AA-I; Gypsy-101_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1754
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.55; Positions  880408  878655.
XX
SQ   Sequence 1754 BP; 488 A; 414 C; 351 G; 501 T; 0 other;
     tgtaaccgtc ggttccaaaa ttttatagtt tgtaggctcc tcctcaaaca tccctgtaca        60
     ttcaacccgc ctgccagtgt gttcccaatt cccactccaa atcatagatt taaaaattga       120
     aatgacagcc tcactggcgg gaccttttgc tgtcattgca gagctaaagg cgttattata       180
     gtaacacacg ttacgttgtc tcgaaacttg cgtcatttat tggcagcggt ttgagttacc       240
     taaatgtagt cggcctaaca tgaaccctgc gcggaaatgt tgccaaccta aatctgagtg       300
     gcctcacttc gggtgagttg ccaaacttcg gatgttttct gctgattaat gtccaagcaa       360
     agaattccag ggaaaattga cttcattctg ttcgtgacta tcacagataa tagtagtgcg       420
     cgccgtgtat tcttaaaaac gtaaaaaaaa tgtaatgtgt aaaattgtgg tgtataaaat       480
     taatttgtgg tttttctttt agatcttaaa agctagttaa aacttaaaaa ctagttaaaa       540
     cttaaagcta atagtacggc aagtgttaag aagtacgata aatagttcaa agtacggtta       600
     gttaaaaaaa aaaatgtatt atgtgattgt aattataatg tgtctttgtt acagcttaaa       660
     caatagaacc atcaaacaaa aggttcaatt aattcctata gttgaatagg atttcaaaag       720
     aaaaggtaat tcttttgtta ctattgtgat taactattag tatggtgaag gaagagagag       780
     acagtttcaa ggtgtgctaa tttcccggaa taggtccact tctgggcctt ttctttttga       840
     ccttcgggtt ccggaggact tctttttgtg catccacaga atttcccaag gccttttgga       900
     ccggtctaaa ccggacatta ttacaatacc ctgaacccaa gccacctgga ggattctgga       960
     attgcggacg gaagatttcc tttgaagacc attccccacc atctccattt tgggaatcgg      1020
     cagtccttta agccggattg tggattgagt cggccatagc agaggtttcc accgcattgt      1080
     ctgcgtctgc gttctccatc aaccagcttc gccgttagta ttgctgcgtc cgtgtaagcc      1140
     accaacccca ccattctgcg cagaggttcc caacgcattc tctgcggcag cgttcagcct      1200
     tcgtcgaaaa cccaccccag tcaagccatc agttaccgcc gtgaaagcca cccctccgat      1260
     gcatgcatgc caccgcctac caccgcccac caccaagcta gccaccgtac agcaccaacc      1320
     accctcacca aaatcgcaag tacaccttac caatgatgtc tctctcttta gggcccaaag      1380
     aggcaaaata aatgtaggca tgtaagttag aaactttggt ggttattttt ctatttgaaa      1440
     accccacaat tggtttatat acaccctttt gatattttgc tcgctttccc gtgcccaaaa      1500
     aggggcattc acgcctcgat ctgggtagtc cgctggagaa atacgatttt caccttgaat      1560
     tctactgact ttggtccaga aaatagttgg tttccttccc ctcgtacgga actgatagct      1620
     ggcggttaga atccagctcc tgctaaaggt gagtgaccgg tttagtcagc gtaacggtgc      1680
     tattaagaat aagcgaccct gtgctcagca tttcccaacc cacaaatccc ctactgagca      1740
     gcctaggagc taca                                                        1754
//
ID   Gypsy-101_DAzt-I repbase;    DNA;    INV; 8114 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-101_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-8114
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 787-787 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The 3'-terminus is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1691..3001
FT                 /product="Gypsy-101_DAzt-I_1p"
FT                 /translation="MSLRGSSQRLIQLDAAILESNREDQEALDMEQERSSS
FT                 SILEAVRVVDLVALIPKYRGEADDLDGFIKAVEEILDMIKKEDKATTGRVA
FT                 LNAIRARIVDNASRKLELSNVDLDWEKMKKALMAHFKDKRPEQDLIVELTN
FT                 IKEKKLDLEPLINKVLELRKAILSAVKATDLLEEAREEKIKWVENVALVAF
FT                 KRAIKGPIGMTIRNMEISDIGQAYEIARREREAYIPEETEAKEEKQAVVGE
FT                 QQQEKTQTPVQGQRKNDTMGQEEQQGMGNWPQYQWGGAVHPPFGIPFPMTG
FT                 GNGWPGMGFGDPTGGNLFAGYPFMHSNAMGYNRGSYRNQQFRNPAWNHGQQ
FT                 NRGRQWGQGSRQGQLAIQAQQDANRSGQTRMSRMSNNSGQSFQSNNSGRSF
FT                 GNQFAPSTSTRNGGRAGTDGQLHNIQEDDGNFPQRASYQHQDT"
FT   CDS           2905..6510
FT                 /product="Gypsy-101_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="KRGTGRHRRSVAQYPRGRRKFSPKSLIPTSGYLGARR
FT                 EQSTLPYIIVRLATGRAIKLLVDTGSTFSLLTPEVIPKEYAQKLKTPIRIK
FT                 TVTQAHEVHAETRLKMFKELGGKGEIRMLLFRFHNYFEGLVGIDTLKQIGA
FT                 TIDIENKQLRTAEIETKLWVTQHRATELYTIEASTKRIIQVPVRMGTGEFL
FT                 ISKTIVRPEIEISEGIYRAVDGMSLVEVANYSDEDQQLLLEEPLDVVEFKA
FT                 EEYVELNNIERGEEVVAKKTPFDKVRTGHLNEEEIEELKKLCVKYPSAFYI
FT                 EGEQLTFTNVVKHHVRTTDDIPVYSRPYRYAVTEREEVKRQIGKLLEQKII
FT                 RHSHSPWSAPVWLVPKKRDASGQRKWRMVVDYRKLNEKLIKDRYPMPIIND
FT                 VLDGLGRAKYFSTLDLASGYHQIEVEEKDVPKTAFSAEGGHYEYVRMPFGL
FT                 SNAPATFQRLMNNLFGDLLGKCCLVYMDDIMVFSASLQEHMSDLNKIFSKL
FT                 EKANFKLQLDKTEFLRKEVEYLGHVVTLEGVKPNPKKIEAIKQFPLPRSRK
FT                 QIKSFLGLLGYYRKFIKDFAAITKPMTKQLKGKKTVQVDQEFEETFETCKT
FT                 LLCNDPVLQFPNFTIPFILTTDASNYAIGAVLSQGHLGADRPLAYASRTLS
FT                 DAEINYATIEKEMLAIIWAVKHFRHYLFGQKFKIVTDHRPLTWLMSIKEPD
FT                 SKLVRWKLQLLEYDYEVVYKKGSLNVVADALSRVQPELNALDNASDVATNG
FT                 ETIHSAEEDVQIGFPISEKPLNDYNIQIIVEKGSPAKVERKVPFRNKVRTI
FT                 WTEDKFEEETIARTLKEILKANKTVAIFIPEQFVIAVQNAYCKYFAYSKIY
FT                 KAVRCTVILPEVTDKTLQEKEVKEHHENNNHRGIEETFAQLRRKLYFPHMK
FT                 QTITQTINNCDKCQLLKYDRKPQKIKYSVTETPGRPMEILHIDLYFINKKY
FT                 VLTIIDKFSRYAWGYTIPARDSVNAVKSLRNFMTLFGVPGKIVCDQGVEFS
FT                 SNLFKDFCKQYEVELHTTSFQQSSSNAPVERLHSTITEIYRIIAEQRKERK
FT                 IEANHEDMLAEAFITYNNAIHSATRLTPHELFTGRTHIFLSNVSFNNEHDY
FT                 LQKINAFQEEIYPKIKERVEREKTKRIEAANTDRQDPVRIEPDKTIFRKEN
FT                 RRDKLTHRFTKHKVQADNNLTITTTKPQKVHKEKIRRLTTNND"
FT   CDS           6526..8112
FT                 /product="Gypsy-101_DAzt-I_3p"
FT                 /note="env."
FT                 /translation="MVHDGRGEERFEIREIRRDEPIAKIMLGPARIIQTYK
FT                 TYVHIVRLEEYLGSVKHLEKTLREMQEDNETKDLVKALQEKLNLVKGKIEA
FT                 ISPKNRSKRGLVNGLGSVVKAITGNLDAEDAERLEKEIRRLQEEERRINEE
FT                 IGTQENVDNKFITMFKNLTTYINEEQVRLTSFVNTYKNGISKTFVEEDKKM
FT                 LRLEYIDRISVTIDMIVLNLNDLTESLILARIGIIPKFILNGEEARKISRK
FT                 LEEQNIQITSEEHMYEFLQLKAIMNKTDIIFSIDMPIFNEETYLLHRLVPL
FT                 PINRTEFVIAPNFIADNGKITYYYAKKCNQIRKLYICKHDRTVNRVNEVCL
FT                 RNLMQGRAAECETKDVGFRREIFEPEKGYIAIFNGERVKIQTDCGTEKLYD
FT                 GSAMIIFEECRVTVNNIQYEAVEQMSVEQLILEIPQIGSLKKNRTTQELGI
FT                 HELRMEDVRTNTELSRIKTGIKIHEATTYTMVGGLLIGVVCATWLSRRAIS
FT                 YAATTTIPMLPPTATLTPTITPLWSVVQTGGGG"
XX
SQ   Sequence 8114 BP; 3015 A; 1505 C; 2000 G; 1594 T; 0 other;
     attgcaacac agacccgaac cccaacatca gcaaattctc ggccactcgc aaaagtagag        60
     actcagcaca tttacaataa tcatatatac caaaagaact aataaagaac agattaagtt       120
     tgaacctcaa agctaccaga cgtgtattca ttcattaacg aattacattg caacggcata       180
     aatccaaccc ttgaggaaca ccaaaaggca attaaccact tacttatcat aactggcgca       240
     gtcggagact ttcgtcgaag gaccgaactc tagaagaaaa cgctaaggag accctggagt       300
     tcgagagaag gcgaaggagg acctacaaga tgctcaaaag gatcacgata atagcactag       360
     tgtaagaaga ataaacacat gtaggtgcac atgagtgagt agagtgtcgg tgtggaatgg       420
     agaagagtaa ggaaataaaa gaattaaata gaaataaaga aaagtaaaga gaatgatcaa       480
     agaaatgtga gtggtgaaat aggtagtgaa gataagaaaa taatggcaaa taatcagcca       540
     aaaccgtgaa taaagttaaa agaaatgcaa ataaagtaca aaagcagaag caaatagaag       600
     cattccaagt ataatgaagg tattaattac aaaagtgcaa aagggggacg tggaaaagac       660
     ctgcagccga gcagcggatc gagcggttgc ggttgcggct ggttcgacgt cgaccccggc       720
     agccggcaga ggcggctggg atgacgtacg ggcagtcgcg gcggcgttcg gaacgttgtt       780
     cgatgcgagc cgatcgacgg gccgagcggg tgcgttgcgg caggaaaaaa acccaagcca       840
     acaattggtt cgacagaggc agagggccca accaacttcg gacggaagaa gggggcgtaa       900
     gtagagaaat atgctcatgt atatatatat gaaacacata gaggcaatga aaaacaaaga       960
     aaaacaaaag aaaagaaaaa gtcggccact cgcatacgta gggcgaagta ctgtatcgca      1020
     cagtgcggat gcctagtatg agaacggtcg gggaatcaaa gaagtaatgc tacgtttagg      1080
     cacactgtcc gcatatggct gggagtactg taacgcacag tacaccagtt tgcttcagag      1140
     tgcagaaaag atacatatac tcgcactgtc cgcatatggc tgggagtact gtaacgcaca      1200
     gtacaccagt ttgcttcaga gtgcagaaaa gatacatata ctcgcactgt ccgcatatgg      1260
     ctgggagtac tgtaacgcac agtacaccag tttgcttcag ggtgcaggaa caatactaag      1320
     agtacgctgt ccgcatatga ccgtgaatac tgtaacgcac agtatagcgg ttagcttcag      1380
     ggtacacgat agagagatca aaaagtgtaa aactccaaaa agaataatga ataacaagta      1440
     aaaagataac aacctatttc acaccgcaca gcgtaaatga aacatatcga aaagaaactt      1500
     attctaacta attgcagact ccatttcgca cacaacatat aaggacacga atattcatac      1560
     ttggcacaac aggaataagg ctaactgcac acatatataa ttaacgataa agataagcac      1620
     acgaacacac acgcacactg cattagtcaa taagtatagt acataagagc aaacacacac      1680
     ataaaggtac atgtcattga gaggaagtag tcagaggctt atccaattag acgcagcaat      1740
     cctagaaagc aacagggagg atcaagaagc attagatatg gaacaagaac gcagttcatc      1800
     ctccattctg gaggcagtac gagtagtgga tttagtggcg cttataccca agtatagggg      1860
     agaagcggac gatctagatg gattcattaa agcggtagaa gagatcttag atatgataaa      1920
     gaaagaggat aaggcgacaa caggaagagt agcacttaac gccataaggg ccaggatagt      1980
     agataacgcc agcaggaagt tagagctcag caacgtcgac ttggactggg agaaaatgaa      2040
     gaaagctctg atggcgcact tcaaggataa aagacccgaa caagatttga tagtggagtt      2100
     gaccaatatt aaggaaaaga aactagattt ggagccactg atcaacaaag tgcttgagtt      2160
     gaggaaggcc atcttaagtg cagtaaaagc aaccgattta cttgaggaag caagggagga      2220
     gaaaattaaa tgggtagaaa acgtggccct ggtagcgttc aagcgagcca taaaaggacc      2280
     gataggcatg acaattagga atatggaaat aagtgacatt gggcaagcat acgagatagc      2340
     tcggagggag agagaggcct acattccgga agaaacggaa gcgaaagagg agaaacaagc      2400
     cgtagttggg gagcaacaac aagaaaagac ccaaaccccg gtacaggggc aaaggaaaaa      2460
     tgacaccatg gggcaagagg aacagcaagg aatgggcaac tggccccaat accagtgggg      2520
     aggtgccgtg caccctccgt ttggaattcc attcccaatg acggggggaa acggatggcc      2580
     cggtatggga tttggggacc cgacaggagg gaaccttttc gcgggatacc cctttatgca      2640
     cagcaatgct atgggctaca atagagggtc atataggaac caacagttta gaaaccccgc      2700
     atggaatcac gggcagcaaa accgtggacg acaatggggc cagggcagcc gccaggggca      2760
     gctagcgatc caagcacaac aggacgcaaa tagaagtggg cagacaagaa tgtccaggat      2820
     gtccaataac tcaggacagt cgttccaatc gaacaattca ggacgatctt tcggaaacca      2880
     gtttgcaccc agcacctcaa ctagaaacgg gggacgggca ggcacagacg gtcagttgca      2940
     caatatccaa gaggacgacg gaaattttcc ccaaagagcc tcataccaac atcaggatac      3000
     ttaggagcaa gaagagagca atcgaccctg ccatacataa tagtaagact agcaacgggc      3060
     agggcaatca aattactggt agacactggt tccacatttt cactcctaac accggaggta      3120
     attcccaagg aatacgctca aaaattgaaa accccgatca ggataaaaac agttacacaa      3180
     gcacacgagg tgcatgcgga aacacgcctg aagatgttta aggagctagg gggaaagggt      3240
     gaaataagaa tgttactatt cagatttcac aattattttg aaggtttggt aggaatagat      3300
     accttgaaac aaataggagc gacaatagat atagaaaaca agcagttgag gacagcggaa      3360
     atagaaacga aattgtgggt gacacagcat agggcgacgg agctatatac catagaggcg      3420
     agcacgaaga gaatcataca agtgcccgtt agaatgggga cgggagaatt cttaatcagc      3480
     aaaacaatag taagacccga aatcgaaatt tcggaaggaa tatatagggc agtagacggg      3540
     atgagtttag tggaggtagc caactattca gatgaggatc agcaactact attagaagaa      3600
     ccactcgacg tggtggaatt taaagcggaa gaatacgtag agctgaacaa tattgagaga      3660
     ggagaggaag tcgtcgcaaa aaagacaccg tttgataagg ttagaacagg ccatcttaac      3720
     gaagaagaaa ttgaagaatt aaagaaacta tgtgtaaaat acccatcggc attttatata      3780
     gagggggagc aattgacatt tacgaatgtg gttaaacacc acgtcagaac aacggatgac      3840
     ataccggtct actcgagacc gtatagatat gcagtcactg agagagaaga ggtaaagagg      3900
     cagataggga aattgttgga acagaaaatc ataaggcata gccattctcc gtggagcgcc      3960
     ccagtgtggc tagtcccgaa aaaaagggat gcctcagggc aaaggaagtg gagaatggtg      4020
     gtagactata ggaaactgaa cgaaaaactg atcaaagaca gatatccaat gcccataatc      4080
     aacgatgtgc tggatgggct aggtagagca aagtacttct caactctgga cttagccagt      4140
     ggctaccacc agatagaagt agaagagaag gacgtaccga aaacggcgtt ttctgcggag      4200
     ggcggccatt acgagtacgt caggatgccc tttgggttga gcaatgcacc cgcaacattc      4260
     cagaggctaa tgaacaatct gttcggagac cttttaggga aatgttgttt ggtgtacatg      4320
     gatgacatta tggtcttctc tgcctcacta caggagcata tgagcgacct aaataagatc      4380
     ttctctaaat tagaaaaggc aaatttcaaa ttgcaattgg acaaaacgga attcctgaga      4440
     aaagaggtag aatatctagg acatgtagtc accttagaag gtgtgaaacc aaacccaaag      4500
     aaaattgaag caataaagca gtttccatta ccaagatcta ggaaacaaat aaagtcattc      4560
     ttgggattgt taggatacta taggaagttc attaaagatt tcgcggcgat aacgaagcca      4620
     atgacaaagc aactcaaagg gaagaaaaca gtacaggtag accaggagtt tgaggaaaca      4680
     ttcgaaactt gcaaaaccct gttgtgtaac gacccggtac tgcaattccc aaatttcact      4740
     ataccattca tattgacgac agatgctagt aattacgcca taggcgctgt actgtcccag      4800
     ggacacctgg gggcagacag accattggcc tacgctagta gaacgttgtc agacgcggaa      4860
     attaactacg cgacaattga aaaagaaatg cttgccatta tctgggcagt aaagcacttc      4920
     cgacattatc tgttcggaca aaaatttaag atagtcacgg accacagacc gttgacctgg      4980
     ttgatgagta taaaggaacc agactctaaa ctagtaagat ggaagttaca gttgttagaa      5040
     tacgactatg aggtcgttta caaaaaggga tctcttaatg tggtcgcaga tgcgttgagt      5100
     agagtgcaac cagaactcaa cgcactggac aacgcttccg acgtagcgac aaatggggaa      5160
     acgatacact ccgcagagga ggatgtgcaa atcggtttcc ccatctcaga gaagccgctg      5220
     aacgattata acattcagat aattgtagaa aaagggagcc cagcaaaagt agaaagaaag      5280
     gtaccgttca gaaacaaggt caggactata tggacagaag acaagttcga agaggaaacg      5340
     atagccagaa ccttaaagga aatactgaag gcaaacaaga cagtagctat ctttatcccc      5400
     gaacaatttg taatagcagt acagaatgcg tattgcaaat atttcgctta tagtaaaata      5460
     tacaaggcag taagatgcac agttatattg ccagaggtga cagacaaaac actacaagag      5520
     aaagaggtga aagaacacca cgaaaataat aaccacaggg gcatagagga aacatttgcg      5580
     caattgagaa ggaagctata cttcccgcac atgaagcaaa caataaccca aacaattaat      5640
     aattgcgaca agtgtcagct gttaaagtac gacaggaaac ctcagaagat caagtacagt      5700
     gtcacagaga ccccgggaag gccaatggag atactgcaca tagatctcta tttcataaat      5760
     aagaaatatg tgttaacaat catagataag ttctccagat acgcttgggg atacacgatc      5820
     ccggcaaggg atagtgtgaa cgcagtcaag tcattaagaa actttatgac actatttgga      5880
     gtcccaggaa agatagtttg tgaccagggg gtagagtttt cctcaaatct gtttaaagat      5940
     ttttgcaaac aatatgaggt ggagttgcat acgacgtctt ttcagcagtc gtcaagcaac      6000
     gcaccagtcg agagattgca ctcgacaata acagagatat atagaataat agcagaacaa      6060
     aggaaggaaa ggaaaataga ggcaaatcat gaggacatgt tagcggaggc gtttataaca      6120
     tacaacaacg caatacattc agcaacaaga ctaacacccc atgagttatt tacgggaaga      6180
     acgcacattt tcctaagtaa cgtgtcattt aacaatgagc acgattacct acagaaaatt      6240
     aacgcgtttc aggaagaaat ttacccgaaa ataaaggaga gggtagaaag agagaagact      6300
     aagaggatag aagcagcaaa tacggacagg caggacccag taagaataga accggacaaa      6360
     acaatcttta ggaaagagaa tagaagagac aagttaacgc acaggtttac taaacacaag      6420
     gtgcaggcag ataacaattt aaccataaca acaactaaac cacagaaggt gcacaaagag      6480
     aaaataagga gattgacaac aaataatgat tgatgataat ttcagatggt tcatgatggc      6540
     agaggcgagg agagatttga aatcagagag ataaggagag atgagccgat tgcgaagatt      6600
     atgttgggac cagccaggat aatacagacg tacaaaacgt atgtacatat agtccgcctg      6660
     gaagaatact taggaagcgt caagcaccta gaaaagacac tcagagagat gcaggaagac      6720
     aacgagacca aggacttagt caaagcactt caggagaaac tgaacctggt aaaagggaag      6780
     atagaagcga taagccccaa gaataggagc aagagagggc tagttaacgg actaggatca      6840
     gtagtgaagg caatcacggg aaacttagac gcagaagacg cggaaagact agaaaaggag      6900
     ataagaaggt tgcaagagga agaaagaaga atcaatgagg aaataggtac acaggaaaat      6960
     gtagacaata agttcattac catgtttaag aatttaacga catatattaa cgaggaacag      7020
     gttaggttaa cttcgttcgt aaacacgtat aagaatggaa taagtaaaac attcgtggaa      7080
     gaggataaga agatgcttag attagaatac atcgatagaa tttcagtaac aatagatatg      7140
     atagtgttaa atctaaacga tttgacagag agtctaatac tagcaagaat agggataatc      7200
     cctaagttca tccttaacgg agaagaagca cgcaaaattt caagaaaact agaagaacaa      7260
     aatatacaaa tcacttcaga agaacacatg tacgagttct tgcaactcaa agcgataatg      7320
     aataaaactg atataatctt ttcaatagac atgccaattt tcaacgaaga aacttatttg      7380
     ctacacaggc tagtgccact accaattaac agaacagaat ttgtaatagc acctaatttc      7440
     atagctgata atggaaaaat aacatattat tatgcgaaga aatgtaacca aataagaaaa      7500
     ctgtatattt gtaagcatga tagaactgta aacagggtca acgaagtgtg cctgagaaat      7560
     ctgatgcagg gcagagcggc ggagtgcgag actaaggatg taggatttcg cagagaaatc      7620
     tttgaacccg agaagggcta tatcgccatc ttcaacggcg agagagttaa aatacaaaca      7680
     gattgcggta ccgagaagtt atacgacgga tcggcaatga taatcttcga ggagtgtcga      7740
     gtgacagtga ataacattca gtacgaagca gtggagcaga tgagcgtaga acagctaatc      7800
     ttggaaattc cccaaatagg ctcgttgaag aaaaacagaa cgacccagga attagggata      7860
     cacgagctga ggatggaaga cgtcaggaca aatacagaac taagcagaat aaagaccgga      7920
     ataaaaatac acgaggcgac aacctacact atggttggag gcttgctaat aggggtagta      7980
     tgcgctactt ggctctcgag aagggcgatc agctacgcgg caacgacgac aattccgatg      8040
     ctgccaccaa ctgccaccct cactccaacc atcacgccgt tatggtcggt agttcagact      8100
     ggggggggag gagt                                                        8114
//
ID   Gypsy-101_DAzt-LTR repbase;    DNA;    INV; 103 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-101_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-103
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 765-765 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The 5' terminus is uncertain.
XX
SQ   Sequence 103 BP; 27 A; 43 C; 17 G; 16 T; 0 other;
     taccagctca gcaccggacc tcacccttct ccctccacta cgagctggcc acaatggaca        60
     gaccagcaac agcatcggct gacaccaatt cacatccgct cca                         103
//
ID   Gypsy-102_AA-I repbase;    DNA;    INV; 5082 BP.
XX
AC   AAGE02017444;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-102_AA_;
KW   Gypsy-102_AA-LTR; Gypsy-102_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5082
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017444; Positions   51615   56696.
XX
CC   Positions [4093-4413] - Integrase core
CC   'ATGCT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1715..4015
FT                 /product="Gypsy-102_AA-I_2p"
FT                 /translation="MDAGEFECMMVSSINKINNPCLVNLLVDGKNLNMEVD
FT                 CGSSVTVIGKNQYFRNFNKNLSKCKKQLVVVNGNKLNIMGEANVLVIFRGI
FT                 KAKLQLLVIDYENEFIPLLGRTWLDVFFTDWRNFFTSSAINGLVEHNVDST
FT                 IDEVKKKFSNVFIKDFSSPIKGFEAELVLKTDSPIYKKAYNVPYRLRDKVV
FT                 DYLNRLEKEGVITPIKTSEWASPVVIVMKKNNDIRLVIDCKVSINKLIIPN
FT                 TYPLPTAQDLFAGLADCKVFCALDLEGAYTQLSLNKRSRKFMVINTIKGLF
FT                 VYNRLPQGATSSASIFQQVMDQVLEGLAYVYCYLDDVLIAGKNFSDCKEKL
FT                 LLVLQRLKNANIKVNWEKCKFFVLELDYLGHVLSEKGLSPCQDKIATIQKA
FT                 KAPRNTTELKSFLGLINYYNKFIPHLSSKLYHLYNLLKKNVTFKWDENCDK
FT                 AFEIGKCSLLSTNFLEFYDPKKAIVVVSDASSYGLGGVIAHEVDGVEKPIC
FT                 FTSFSLNSAQKSYPILHLEALALVCTIKKFHKYLYGQHFKVFTDHKPLVGI
FT                 FGKEGKNSIFVTRLQRFVMECSIYDFDIAYRPSGRMGNADFCSRFPLDEPV
FT                 PNSYDVEYVRNINFSNEFPLDYSAIAMETKTDEFLQQIILFMRHGWPDKVE
FT                 KQFVNVFANQYDLELVDECLLYQERVVVPSKMQKNILKLLHTNHNGIVKMK
FT                 QLARRTVYWFGINTDIEKFVARCETCNSMAMVPKPKITSKWTPTTKPFSRI
FT                 HVDFFFLLQSYILANS"
XX
SQ   Sequence 5082 BP; 1618 A; 833 C; 1116 G; 1515 T; 0 other;
     gctggcgaac gagaaaattt ggaaagcgtg cataatttaa agtgctgcgg gtgataagtc        60
     cgtggtgata ttgtagtgat tgaatttggg caacttgtgg agaaaaccgt cagcgtcatt       120
     agcgtggaaa gaaccgcatc ggcagtttga gaaaagttga caacagcggc gggagaaatt       180
     tttcgtttct acgattcgac gtgaggtgat ccgtacccag tagaggtgat tttagttggc       240
     gttgtcggaa gtcatccggt ttttggagta agtgcagtga atgtacggtg gaagtgattg       300
     ttcttttcat ttctatgcac ctgatgccac ggggctattc agtggacaaa tcaggcgaat       360
     atcgccattg ttttttgatt gtgctaggtc atgaacagtg aataggcggt gcacatttag       420
     cagaaccatt taaaaaaaaa aaaaagtaga attgttaaag aaaacgaaac acttctattg       480
     aagattgttt taagattcta attaattgat atttttctat tgtttattta ggaatctgct       540
     gattggcacg tactatccct acttactggt agccactccc tgggaaaaag acctggtgct       600
     tgcgaacaag cagaatatcg ctcaagtgac gaaaccgact tctacaacaa tcttccgttg       660
     tttgttccgc tggctgactg gctagtatcg gggagactca atagtatctg gtaagctact       720
     caaattttct ttgcattcct gtgattggtg tgaagtttta cgagatggcc gctcttacga       780
     cgattatgga gccctataga aaggggacat cttttactga gtgggctgag cgtttggcgt       840
     cggtttttcg gttaaataaa attaaagatg aagacaaaaa ggattacttt gctacgttat       900
     gtgggccggc cgtttacagt gaactcaaac tgttgtttcc caacgataaa tatgacgata       960
     tcgtctacga caatatgatc acaaaattaa aagggagatt tgacaaatcg gagtcggata      1020
     tcattcaaag atttaaattc aatcaccgtg tgcagctgcc ggatgagacg atagaagatt      1080
     tcgttctttc ggtgaagctg caggcggagt tttgttcatt tgaaaattac aaaaaaaggc      1140
     aatccttgat cgcataatag ccggggttaa agacaaagca ctgcagcagc gtttgttgag      1200
     tgaagaaaat cttactttag aaaacgcgga aaaaatggtg gttacttggg aaatggcctc      1260
     ttgtaatgct agaaaaatta gttctaatga agtttacggg caaatttctt ctctccgtca      1320
     ccgcggtcca acgggaaaaa ctttcaaaaa gcttgcggac acttttcagt tagcagcagg      1380
     gtcgtcatgg caaaataatc cgagaggacc agtgaagaac cgtttaggtt accagtaaca      1440
     gcaaggacag cggtcttaca atcggccgaa acaaataggc tggaacaaag ggtcctggaa      1500
     acaaaaggaa tacgaggata gattttgcga attttgtggg tcgaaaggac atttgaaacg      1560
     caagtgtttt aaattgaaaa acctgaaaag agattctgta cagtttgttg aggattggaa      1620
     gacggaaaat ggcgttgata aggatggcga aaccagtatt agtggacttt tcaacagact      1680
     taaggcggac aattcggaca gtgaggacga tgacatggat gcaggtgaat ttgaatgcat      1740
     gatggtttcc tcaatcaaca aaattaacaa tccttgttta gtaaacttat tggtcgatgg      1800
     taaaaattta aatatggaag tggattgtgg atcttcggta acagtaattg gtaaaaatca      1860
     atatttccgg aatttcaaca aaaatttgag caaatgcaaa aaacaattag tggtcgtaaa      1920
     tggcaacaag ttaaatatta tgggagaggc aaatgttctt gtgattttca gaggcataaa      1980
     agcaaaacta cagcttttag ttatcgatta cgaaaatgaa tttattccgt tgttaggcag      2040
     aacatggcta gacgtttttt ttacggattg gaggaatttt tttactagtt cagcgattaa      2100
     tggattggtt gaacataatg ttgattcaac aattgatgag gtgaagaaaa agttttcaaa      2160
     tgtttttatc aaagattttt catctcctat taaagggttt gaagctgaac tagtgttgaa      2220
     aactgattcg cccatttata aaaaggctta caatgttcct tatcggctgc gtgacaaggt      2280
     tgttgattat ttaaatcgtt tggaaaaaga aggggttatt actccgatta aaactagcga      2340
     atgggcgtca ccagttgtta ttgtcatgaa aaagaacaat gacataaggc ttgttatcga      2400
     ttgcaaggtc tccataaata agctcatcat acccaacact tatcctttgc caacagctca      2460
     agatttgttt gctggtttgg cagattgcaa agttttttgt gcgcttgact tagaaggagc      2520
     atatactcag ctatctttaa ataaacgatc cagaaaattc atggtgataa atacaattaa      2580
     aggacttttt gtttacaaca ggctacctca aggagcaacg tcaagcgcat caatttttca      2640
     gcaagtaatg gatcaggtgt tagaaggttt ggcatatgtc tattgttatt tggatgatgt      2700
     attgatagca gggaaaaatt tttcggattg taaagaaaag cttctcctag ttttgcaaag      2760
     gctaaaaaac gcaaacatta aagtaaattg ggaaaaatgc aaattttttg ttttggaact      2820
     tgactacctt ggtcatgttt taagtgaaaa ggggctatct ccttgtcaag ataagatagc      2880
     tacaattcag aaggcaaagg ccccgagaaa tactactgag ttgaagtcct ttttagggct      2940
     aataaattat tacaacaaat ttattcctca tttatcttca aaattgtatc atttgtacaa      3000
     tttgttaaag aaaaatgtta cttttaaatg ggacgaaaat tgcgataaag cttttgaaat      3060
     tggaaaatgc tctttactat caaccaattt tttggaattc tatgacccta agaaagcgat      3120
     tgttgttgtt tccgacgctt ccagttatgg actaggtgga gttattgccc atgaagtaga      3180
     tggtgtcgaa aaacccatat gtttcacgtc attttcctta aattcagccc agaaatctta      3240
     tcctatactt catttagagg ccttagcatt agtgtgcaca attaaaaaat tccataagta      3300
     tctttatggc caacatttca aggttttcac tgatcataag ccattagtgg gtatatttgg      3360
     gaaagaagga aaaaactcca tatttgtgac tcgacttcag cgttttgtta tggaatgctc      3420
     aatttatgat tttgacattg cgtatagacc ttcagggaga atgggaaacg ctgatttttg      3480
     ttccaggttt cctctggatg agccggtacc aaatagttat gacgtagaat atgtaagaaa      3540
     tataaatttt tccaacgaat tcccccttga ctatagtgca atcgcaatgg agacaaaaac      3600
     ggacgaattt ttacaacaga taattttatt tatgcgacat ggatggccgg ataaggtcga      3660
     gaaacagttt gtcaatgtgt ttgctaatca atatgattta gaattggtag atgaatgtct      3720
     attatatcag gaacgagttg ttgtacccag taaaatgcag aaaaacattc ttaagctact      3780
     tcatacaaac cacaatggga tcgtcaaaat gaagcaatta gctcggcgta cagtttactg      3840
     gtttggcata aatactgaca tagaaaaatt cgtagctcgt tgtgaaacat gcaatagtat      3900
     ggcaatggtg cccaaaccaa aaataacgtc taaatggacg cctactacta aaccgtttag      3960
     tagaattcat gttgattttt tttttcttct ccagtcatac attcttgcta atagttgata      4020
     gcttttctaa atggatcgag gttgaatgga tgaagaaagg gactgattgc ccgaaagtcg      4080
     ttaagaaatt agttgttttt ttttgctcga tttggactac cagattgctt agtgtcagac      4140
     gggggtcctc ctttcaactc acattccttt ataaattttc ttaaaaaaca aggcataaat      4200
     gtgcttaaaa gtcctcctta caatccagca agcaatggcc aagcggagag acttgtaaga      4260
     acggttaaag aggttttaaa gaagttcctc attgatccag aagttatgga acttgatttg      4320
     gaggatcaga ttaatctttt tctgtttaat tatagaaaca cttgtttgac ggaggatgag      4380
     gccttcccat ctgaaaaagt tttttctttc aaaccaaaga ccattattga cctaatcaac      4440
     cccaaaaaca gacttaagta taacatctct acacagtctg aacgctcaca agatgatatg      4500
     tcgtttgaat cgggtcagat tgacaagaaa gaccctttag acaacctgat gagtggtgat      4560
     aacgtatggt ataaaaacca caatccacat aataccagaa gatggataaa agcggtattt      4620
     atagcaagat tctctcgtaa tgttttccag gtggaaattg gaagcgtgcg aacaacggca      4680
     catcgcacac aaattcgacc gttttgtagt ctggatgagt ttgatcgccc caacgtgatg      4740
     tttccagtgt cggatactcc aagcatggta gacgcaagca atacaccgtc accggtcggt      4800
     cgtgaagaac ttacagcatg ctcggtaccg acgtcgatcg gtggtgatga acccgcagtt      4860
     cgttcggaac cattgagtat ggaaagtcgt acaaaacgga agaggagatt ggggacaccg      4920
     acgatttcaa tcactgattt aaggcgatca aaacgagcca ggcctaataa gggcgattca      4980
     gattttgtat attataagta gacaatatag tttcaagatg aattaatgtt cgttcgaatt      5040
     tcaaactaga attaaggtca agtttttaaa gggtgaagaa gt                         5082
//
ID   Gypsy-102_AA-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   AAGE02017444;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-102_AA_;
KW   Gypsy-102_AA-I; Gypsy-102_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-248
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017444; Positions   51367   51614.
XX
SQ   Sequence 248 BP; 70 A; 37 C; 54 G; 87 T; 0 other;
     tgtagtgtct tagttggaca cgctctgaat tatataaata tgattttgta ctgaattcga        60
     tttagagtgt aactgatgtc attagatgtg ctatgaatgt agcgcgagtt ttgtatgtgt       120
     gctggaaaga taaaatacag accagctcga agagcagggc tcattcgtgt tctggatagc       180
     aaacttgaaa gttgtgtttt ttataatttc ctctaaagaa gttttcccca cagttcccag       240
     atatttca                                                                248
//
ID   Gypsy-103_AA-I repbase;    DNA;    INV; 5445 BP.
XX
AC   supercont1.322;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-103_AA_;
KW   Gypsy-103_AA-LTR; Gypsy-103_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5445
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.322; Positions  905659  911103.
XX
CC   'CTATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1726..3018
FT                 /product="Gypsy-103_AA-I_1p"
FT                 /translation="MIVDQIVEKCTSSKLRQKLLKRDMLLDEVEALGTSLE
FT                 ESDRQLREFNRPPSEAINRLTYRGQTSSALNKPEIFKKPYQWSSNRNLYSR
FT                 GGRNFARSEPVCFACGKKGHVKGSDVCPAIKAQCLKCRGYGHFARQCLKRP
FT                 NIDQRGPVPVKRVRAVQEINEQNKEEDGYIFYAMGRNTFLFKIGDVEVPMV
FT                 IDSGAAANIISMSIWEEMKRLGAQVSNMTTTIKKDFTSYASSKPMEIVGRF
FT                 EASIQGGGKHTEATFYVAKEGQQCLLGDETAKELSVLKVGFDIGNVEEQQE
FT                 FTKFKGVIVEIPIDESIQPVQQPYRRVPFALEEKVEGKLRMMLAKGIIERV
FT                 RGPSRWVSPMVPVLKDSGEIRLCIDMRRANQAILRVTHPLPTVEELLGSVN
FT                 GATVFSKLDVKDAYHQLEISEKSRTITTFITKTGLFR"
FT   CDS           3173..5434
FT                 /product="Gypsy-103_AA-I_2p"
FT                 /translation="MFGVSCAPEIFQKTMESILAGLKGIVVYLDDVMVYGA
FT                 NRAEHDERLTLLQNRLKEYDILLNDQKCIYGVDQLEFLGHVLVQNGIRPTE
FT                 HRLKAIKNFREPRNVSELRSFLGLITYVGRFIPNLASKTGLLRKLLRKGSC
FT                 FQWEEIHQKAFNEIKEAGCNVGYLGFFSREDKTKLIADASPEGVGAVLLQE
FT                 NKEGCTRIIAFASKALSDLEKKYFQTEREALALVWAVEKFQLYLLGTKFQL
FT                 ITDCKALKFLFSPRSKPCPRIERWVLRLQSYDYEISHEPGATNLADALSRL
FT                 SVSEGKPFDDHTEMYIHHLVEAAIPDAVTLQNVLEETQNDPILQELMCALE
FT                 TNLWTEDINMYKPFKSELHVAEGIVMRGDRLIIPEKLRKQVLDCAHDGHPG
FT                 MSSMKRRLRQKTWWPKMDDQCEKYVKQCNPCTLVSSLGPPEPMLRTKMPDR
FT                 VWTDVAVDFLGPLPSGHNLLVIIDYYSRFVEVVVMKKITAELTIEALFETF
FT                 TRLGVPEVLRSDNGPQFISESFKSFCKEFGITQQKTTPYWPQANGEVEKMN
FT                 SSILKRLRISQETNQEGWKWDLRNFLLMYNSTPHSTTGIAPSALMFGRVLR
FT                 DKLPSVKQSTGQEAESIKDRDWERKLKQAKITDNRRKATLSNLNVGDIVVA
FT                 KRMSKDHKLSSNFDPEQFEIISRTGTNVELQSLSTQKLYHRNVSHLKPITK
FT                 SGDIVENHQTVEKELGKSDKTCPAQQELARRPQRMSRAPEYLRDYVAAIEA
FT                 NIK"
XX
SQ   Sequence 5445 BP; 1739 A; 919 C; 1325 G; 1462 T; 0 other;
     tttggcgacg acggtgaaat atgtaagtaa gaatttggaa tattgtgaaa ctaatgagtg        60
     atatgaaatc aaaatttcac atgaattcgg cacatcattc atacggggaa aatggcggaa       120
     gctgaagacg cagaaaatat taacagctag tgtggtatgg tagtggtagt gagcggtaaa       180
     aaaaaaatag ctgttgggag acggagagag aagagaatgg ttctctttat gtggggttcc       240
     tttttttttt ttttttttcg ttcgttggcc tgaaatgagt gtgtgaaagt tgtgtggtta       300
     cctgctggtg cggcagaaaa aaaagcaaaa ttgagtgcaa gaaatctacc ttgtgtatgt       360
     atgaatcagt tcagagaagt atgatgatat gaatgtgaat atgatgaggg gatcgcaatt       420
     atgcttttga tgttttctca acccgcagag gaaaaattga acaggtgcac ttgtgtaagt       480
     gacaaaacaa aatcatcatt ataagtatta tacataggta tacatctaca tatagatggt       540
     aaatacttgg gaatgatgct ggatttttgg atttggattt agcatagaaa ggtaagtcaa       600
     tattttagtt tcaaagctgc attgaattgt ttttgctttc caatggtctg aaatacacta       660
     tgttttataa atatattgac aatcgggtat gataactaat ttcggtgaaa attgaagaag       720
     cggaatcgca gagaacggta tcgttcatga tgaaattaga tgacggtatc gtcaaagata       780
     aatgactaat atgtcatagc atgacgggat cgtcatccaa taataaagaa gtagagcatg       840
     cgggatcgca agtgaagtat actagttcag aacagtagtt acagcgtttt gtgtggaaga       900
     gtttggaagc aagcggagtc gcgatgatta tcggtgattc ttaataatat tagcctcatg       960
     aagaacaagc ggagtcgcta ttgaaatgaa tataaaagcg ggttcgctgt ttaatagaaa      1020
     gtaagcggag tcgctatgaa aatttagatg aaagcgggtt cgcagtttaa taaaggataa      1080
     gcgggttcgc tttattatgg tggtagaggg tttattgtaa aaaaaatgaa ctggcagaaa      1140
     cattggtact gtgttttttt tatagatgtt tcatcaatag taattatatt taatattatt      1200
     acatgattac aatgatgtgc cgaatagtga aatgttggtt atatattcaa cacagaagta      1260
     tcctgttttt tttataatgg gggtatattt tgttattttg attacgattg caacagggct      1320
     ggtaacgact gtcgagtaag agtgttcctg gcgtctgtgg agtcttcgca gctgccagta      1380
     gcgtggagca agtggaaaag agatttagaa tcatattttg atgcagagaa tattgtttcc      1440
     cagtacgaga gaagagcaaa gttattgtat ctgggaggac cggacttgag ggatattttt      1500
     gataatctcc ctgaaattga taatgtccca catgttttgg tggacccgcc atattatgat      1560
     gcggcgattt ccaaattgga cgctcatttt gagccatttc gtcgtcgatc ttatgagcga      1620
     catcaatttc gacaaattgc tcaaaaaccg tcagaaaggt tctcagattt cgtgctgcga      1680
     ttgcgtacac aagtgaaacg ctgtgaatac agccagcctg atgaaatgat agttgatcag      1740
     attgttgaaa aatgtacctc gagcaaactg cgacagaagc ttctcaaacg agatatgtta      1800
     ctcgatgagg ttgaagcgct tggtacgagt cttgaagaaa gcgaccgcca gttgagggaa      1860
     ttcaacagac ctcccagtga agctatcaac agattgactt atcggggtca aacatcatca      1920
     gcactcaaca agccggagat tttcaagaag ccgtatcaat ggtcgagtaa ccgtaatctg      1980
     tactctcgtg gtggtagaaa ttttgctcga tcggagccgg tctgtttcgc ttgtgggaaa      2040
     aaaggacacg tgaagggatc agatgtgtgt ccggcaatca aagcgcaatg tttgaaatgc      2100
     cgaggatacg gccattttgc acgtcagtgt cttaaaagac caaacattga tcaacgagga      2160
     cccgtaccag taaaacgtgt tagagcggtt caagagataa atgaacaaaa caaggaggaa      2220
     gatggataca ttttttacgc tatgggaaga aacacgtttt tgttcaagat cggagatgta      2280
     gaggtaccga tggttataga ttcgggggca gcagctaata tcattagcat gtcaatatgg      2340
     gaggaaatga agcgattggg tgcccaagtt tcgaatatga ccaccacgat aaagaaagat      2400
     ttcacaagct acgcttcaag caagccgatg gaaatagttg gccgttttga agcttccatc      2460
     caaggaggag gaaaacacac tgaagcgacc ttctatgtag ccaaagaagg gcaacaatgc      2520
     ttgttgggag atgaaacggc caaagaattg agcgtcctta aagtgggttt tgacatcggt      2580
     aatgttgagg aacaacagga attcaccaag ttcaaggggg ttattgttga aatacccatt      2640
     gacgagagca tccaaccagt gcaacaacca taccggcgcg taccgtttgc tttggaagag      2700
     aaggtggaag gaaagctgag aatgatgttg gctaagggaa tcattgaacg cgtacgagga      2760
     ccttcccgtt gggtatcacc gatggtaccg gtgctcaagg attccggcga gatcagatta      2820
     tgtatcgaca tgcgtcgagc gaaccaggcg attttaaggg taacgcatcc gcttccaacg      2880
     gtcgaggaac tattaggttc agtcaatgga gccacggttt tttccaaatt ggatgttaag      2940
     gacgcttatc accaattgga aatttcggaa aaatcgcgaa ccattacaac tttcatcacc      3000
     aaaaccggat tgttcaggta atttttcgtt ttggtgaaac tgttcgccat ttttcggtaa      3060
     attaaataaa taacatgaca gtgtgaattc ggaataaact taagtaatat tttaatacat      3120
     caaaatatct tctttttgta aattttcatc attaaacaga tttaagaggc tcatgtttgg      3180
     ggttagttgc gcacccgaaa ttttccagaa gaccatggaa tcgatactgg cgggtctgaa      3240
     aggaatagtg gtgtatcttg acgacgtcat ggtttatgga gcaaacagag cagaacatga      3300
     cgaaagactg actttactac aaaatcgtct caaagaatat gacattcttc ttaatgacca      3360
     aaaatgtatt tatggagtag atcagttaga gtttttagga catgtattgg tccaaaacgg      3420
     aatacgccct acagaacatc ggttgaaagc gattaaaaat ttcagagagc ctaggaatgt      3480
     atctgaatta agaagttttt taggcttaat cacttatgta ggtcggttca tcccaaacct      3540
     tgcctccaaa acgggtttac tcaggaaact tttaaggaaa ggaagttgtt tccagtggga      3600
     agaaattcac caaaaagcat tcaacgaaat taaggaagct ggttgcaatg taggatacct      3660
     tggatttttc agtagagagg acaaaacaaa acttattgcc gatgctagcc ctgaaggtgt      3720
     gggagctgtt ttattacaag agaataagga agggtgtact cgtattattg cttttgcgag      3780
     taaagctctc tcagatctgg agaagaaata ttttcagacg gaacgtgaag cgctggcatt      3840
     agtctgggct gtcgagaagt tccagctata tctccttggt accaaatttc aactgatcac      3900
     ggattgcaag gctcttaagt tcctgttcag tccaaggtcc aaaccatgtc caaggattga      3960
     acgatgggtt ttgcgccttc aatcatacga ttatgaaata agtcatgagc cgggtgctac      4020
     aaatctagct gatgcccttt cacgcttatc ggtaagtgaa gggaaaccat ttgatgacca      4080
     tacagaaatg tatattcacc atctagtgga agctgctatc ccagatgctg tgaccttgca      4140
     gaacgttttg gaagagacac aaaatgatcc gattctccaa gaactaatgt gcgctttgga      4200
     gacgaattta tggacagagg atataaacat gtataagccg tttaaatccg aattacacgt      4260
     agccgaagga atcgttatga gaggcgatcg gctgataatc cctgaaaaac ttcgaaaaca      4320
     ggttctagat tgtgcacacg atggacatcc aggtatgagc tctatgaagc gaaggctgag      4380
     acagaagact tggtggccaa aaatggacga ccaatgcgaa aaatatgtga agcaatgtaa      4440
     tccatgtact ctggtatcat cacttgggcc accagaacct atgttgagaa ctaaaatgcc      4500
     ggatagagtt tggacagatg tagcagtaga cttccttggg ccacttccta gtggacataa      4560
     tctgttggtc attattgatt actatagccg atttgtggaa gtagtggtta tgaagaagat      4620
     tactgcagaa ttgacgattg aagccttgtt tgaaacattc acccgtttag gggtaccgga      4680
     agtactacga tcggataatg ggccacaatt tattagtgag agtttcaaat cattttgcaa      4740
     agaatttggc atcacacaac aaaagacaac gccttattgg ccacaggcca acggggaagt      4800
     tgagaaaatg aacagctcaa tattgaaacg tctacgtata agccaagaaa ctaaccagga      4860
     agggtggaag tgggatctca gaaacttctt actgatgtat aactccacgc cacacagcac      4920
     tactggtata gcaccatcag ccctcatgtt tggaagggtg ttgagggata aattaccatc      4980
     ggtgaagcag tcgaccggtc aggaagctga aagcattaag gacagggatt gggagagaaa      5040
     actgaaacag gcgaagataa cggataaccg caggaaggct actctcagca acctgaatgt      5100
     aggagatatt gttgtggcta aacggatgtc caaagatcat aaactttcaa gtaatttcga      5160
     cccggagcaa tttgagatta ttagccgtac aggaacgaac gtagaactac agtcgttaag      5220
     cacgcaaaaa ctataccatc gtaacgtatc gcacctgaaa ccaataacaa aatcaggtga      5280
     catagtggaa aaccatcaaa cagtcgagaa ggagttggga aaatcagata agacttgtcc      5340
     ggctcaacaa gaattggcgc gacgaccaca acggatgtca agggctccag aataccttcg      5400
     ggattatgtt gcagctattg aggctaacat taagtaatgg gggag                      5445
//
ID   Gypsy-103_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   supercont1.322;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-103_AA_;
KW   Gypsy-103_AA-I; Gypsy-103_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.322; Positions  905452  905658.
XX
SQ   Sequence 207 BP; 62 A; 34 C; 56 G; 55 T; 0 other;
     tgtagcatag ggcaactatt gggatcgata ccatacctta atatgtagag tagcagtgca        60
     gagatcgagc gacgaagagt gtagagtagt agaactgggg acggcaacga ataaaggtgt       120
     gcctcgcggc gcggagtatt tcaaaagaat ttataattat tcgaagtgtt gtgatttgtt       180
     cctctatccg aagattccgt tactaca                                           207
//
ID   Gypsy-104_AA-I repbase;    DNA;    INV; 5751 BP.
XX
AC   supercont1.206;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-104_AA_;
KW   Gypsy-104_AA-LTR; Gypsy-104_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5751
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.206; Positions  124906  119156.
XX
CC   Positions [3305-3817] - Reverse transcriptase
CC   Positions [5161-5580] - Integrase core
CC   'AAAA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2702..4270
FT                 /product="Gypsy-104_AA-I_2p"
FT                 /translation="MIQYKYKVDYELWMLFILNRNKELTVPIQDNLNRAII
FT                 LPQRCEIIRRIPSLTQCQEDSVVCSEEIHPGIFMGNTIVNSQNPYVKLVNT
FT                 LEVPVLIENITPTTLPLKNFYVHTSTHNTIPQSRAKILADTIKIDNANPNL
FT                 KNKLQKLLNEYNDIFHLPGDRLSTNNFYEQKINLEDKQPVFIANYKQIHAH
FT                 VPEIKNQVNNLLENGIIEPSVSHYNSPILLVPKRTQNGQKWRLVVDFRQLN
FT                 KKLFPDKFPLPRIDAILDQLGRAKYFTTLDLMSGFHQIPLEEHSKKYTAFS
FT                 TSTGNYHFKRLPFGLNISPNSFQRMMTIALAGLTPECAFVYIDDIVVIGCS
FT                 ENHHLGNLRIVFERLRKYNLKLNPEKCCFFKQEVTYLGYKITDKGILPDDS
FT                 KYDVIQKYPVPKNADEVRRYVAFCNYYRKFIQNFSEIAQPLNKLLRKNTLF
FT                 EWSDECHQSFELLKTKLLQPPLLQYPDFQKEFILTTDASSTACGAVLSQKY
FT                 NEVELPIAFASRTFTKSELNKAIIEKN"
FT   CDS           4372..5580
FT                 /product="Gypsy-104_AA-I_1p"
FT                 /translation="MKKPSNKLQRIRLDLEEYDFEIEYVKGKQNVIADALS
FT                 RINITSAELKTINVITRSMTKKKNPEEDKVSILQPDKLRMFNALSFEEVLN
FT                 LPKLEFGIINELNSVICTPKIKNKTSKKDLLLVRGIHLNNKGNDALVHLFQ
FT                 SIEKDAIKLNLNQLALSTDDEIFEFITAEALKKIANISMESIEILLYEKPK
FT                 IIKDPRMAAEILKKTHNSPTGVHLGQTKMYIKLRKEFYWKKFKESIQNFVN
FT                 NCKHCKMNKHQKPTHEKFIKTTTPCRPFEIISVDTIGPFLKTNYNNRYAVT
FT                 IQCDITKYVTVISIINKEASTVAKAVVEKFMLTYGTNITAVRTDMGTEYRN
FT                 ELFKSIGKLLKFEHKFSTPYHPQTIGALERNHKCLNEYLRIFTNEHINDWD
FT                 EWVNYYTFA"
XX
SQ   Sequence 5751 BP; 2200 A; 1072 C; 1007 G; 1472 T; 0 other;
     tggcgaccgg acgcatcgag cacaacagtt cctcaggcta gcacaattac agtgtgatct        60
     attccgagac aaatttagga aagaacagta agtgaagtaa accctgcgca gaacgaaagt       120
     gataatctgg actagtgatt aaaatgatga gtgcactatt tgccggaatt ttagcataag       180
     cattgttact acacttgcta aaaatgacaa aagattttgt tgaagaactc aaggaaacta       240
     tgaatttggc aaacgacgcc acccggtaaa cccgtcctag tgctacgcgt aataaaatgg       300
     gaaagtccgc tagcaaaact gttagcacca caggagaccc ccaagtgaac attgttaatc       360
     agttggaaga ccacagtgtg cgccacgaag gccacgaatt aaaattgtgg ctcttgctag       420
     cactgaattt gcttcaaata ctgtgggctg tgttccaatg gaacacgaaa aggattaaga       480
     ccaaagcctt ccgcaaaggg ttgaaatccc aagacaatct aaacagggtc tagagtgaaa       540
     tttaggaaga ttaaaagaca tctagtggaa aaactatgaa aaacatttag taaacttaat       600
     ctctgcgcgc aatgaagaaa gaacgattat caaacgtgct accgcagcat aaacagacct       660
     tggaaaatct agcaatcaag aaatcgaact tcggtcaaaa agtgaaaagt gaaaccaaaa       720
     gaacaaataa gcacggacaa caagtgaaaa aaacagatga gtgcatgata ttgcagccag       780
     tgaaattcca aataatcgag caactaccgt ggctggaaga tcggttggaa gaaatgcgcc       840
     aatggggaat acgcacgaaa atcgacgttg agaaggtcaa ggcactggcc gcaaagctac       900
     aacaaccgaa gaagaaacca accacaacaa tccgcatgaa gccagctgag tcaacaaaat       960
     cgagcacatc aacgaagcag taatacatcg atcgtcagta atagagcgct tcaagcaata      1020
     tgtaagtaaa ttaagttata aaaaaaaaat agacaacaca tacccaatat agataaaaaa      1080
     aaagtgtaat gaaccttgta caaaatcaat ttttcatcat aaactgccag cgaaaatttt      1140
     cctttaattt cttttcatag tcgcattcac cttaaatgga caatgaagtg gatgtgctca      1200
     taaaaaaata gtcaatatac aaaataactt caggaaatcg cctaatcgga agtatcttag      1260
     acaaactttg attaagaaag cgattgaaag ccgggactta tatcatcaac ttttaggaaa      1320
     acttgaattc catccgcagg gaaaattaat cttaggtggt gtacgaaaca cctatagcga      1380
     aataaaaata ttcattgacg gtaggctagt tttagattct aatttaccaa gtttcaaaac      1440
     tgtggcacaa acaattttaa gtgctataaa aattaaaaac atcttcgaag ccaccaaaat      1500
     ggcaacaata cttgaagtta ttaagatagc ttccacactt atccctaact acagcggaaa      1560
     cccggataaa ttagaatctg tagtttctgc tttacacgct ctggacacta ttgtaacaga      1620
     tgcaaccaga acagctgcaa taaacgtagt tttatcaaaa ctggaaggta aaccacgctc      1680
     cgccgtcgga aatgcacccc aaacgattaa cgttattgtg caaaatttgt gggataagtg      1740
     taaaaacaca caaacatcag aacttctttt agcaaaatta tctgcaactc gacaaacagg      1800
     gacactgtcc aattttacag atgaggtcgc tagaaaatat atatctagca gaaaatatcc      1860
     ccgacaacac cgccagtaaa atggctgtga aagcgggtat aaaggcattg tgtggtggta      1920
     taaaaaatac tcaaacacaa cttatattaa aggcaggcaa ttttgagacg cttaatgcag      1980
     cgattattaa agccacagaa aacgatacaa acacctacga agaacagggt aatgacaacg      2040
     tgaatgtctt tgctatgcaa aatagatttc acaacaactt gagaggtcga ggaagaggag      2100
     ttagaaattt ctcgaataat gctcatttcc ctcgagaaaa tggctacccg caaaattttt      2160
     atcagcaagg ccaatacaga ggacaaacta ggtacaggaa taattggtca tccagaggaa      2220
     atttcaaccc cttcggtggt cgtggaagac ttaggccccc acagcattct atgtatgtag      2280
     cacaacagga aaatatcgaa aacgatgaac aacagggtca agatgatcag cagcagcaac      2340
     aacaactatc aactcccaac cagaatcacc ctttaggcgt tcagttcggg cagcatacac      2400
     cataaatgta tctgcctgca actttgtgaa attaaaactt ggattatcgg aagtagaatg      2460
     tacctttttg ttagattctg gttccgatat ttcaattatt aaagccagta aagttaaatc      2520
     tgaccaaatt tattatccct cggaaaactg caatattaaa ggcgtcggtg aaggaacaat      2580
     tacttcacta ggcagcactc atacatgcct tcatatagaa ggcgaaaaaa ttaatcaatc      2640
     ttttcaaata gtgtcgaatg gcttcccgat accaactgat ggtatcctag gaagagattt      2700
     catgattcag tataaatata aagttgacta cgaactgtgg atgcttttca ttttaaatag      2760
     aaataaagag ttaacagtcc ctattcaaga caatttaaat agagccatta tcctacccca      2820
     gcgttgcgaa ataattagaa gaattccttc tttgacacaa tgtcaagagg attcggtagt      2880
     atgctcagag gaaatccacc ccgggatttt tatgggtaat acaattgtga atagtcaaaa      2940
     cccttatgtg aagctagtga ataccttaga agtaccagtt cttatagaaa acattactcc      3000
     tacaacctta cctttaaaaa acttttacgt acatacatcc actcataata ctattcctca      3060
     atcaagagca aaaattttag ctgatactat caaaatagat aatgccaacc caaatttaaa      3120
     aaataaattg cagaagttat taaatgaata taacgacata tttcatttac ctggagaccg      3180
     tttaagtact aataattttt atgagcaaaa aattaattta gaagataaac aacctgtgtt      3240
     catagctaat tataagcaaa tccacgcaca tgtaccagaa attaagaatc aggtgaataa      3300
     tttgttggaa aatggaatta tagaaccttc agtatcgcat tacaattccc cgatactgtt      3360
     ggtgccaaaa aggacacaaa atggacaaaa atggcgatta gtggttgact tccgccaatt      3420
     aaataaaaaa ctttttcctg ataaatttcc attgccaaga attgatgcta ttttagatca      3480
     acttggcagg gcgaaatatt ttaccacact cgatttaatg tcgggatttc atcagatccc      3540
     attagaagaa cactcaaaaa aatatactgc gttttcaacc tcaaccggta attatcattt      3600
     taaaagatta ccattcggac ttaacatatc acccaatagt ttccagagaa tgatgactat      3660
     tgcattggca ggcctaacac cagagtgcgc gtttgtatat atagacgaca ttgtggtgat      3720
     aggctgttct gaaaatcatc atctgggaaa ccttagaatc gtttttgaaa gattacgcaa      3780
     atataacctg aaattaaacc ctgaaaaatg ttgcttcttt aaacaagagg taacctattt      3840
     aggttacaaa attacagata aaggcatttt gccagacgac tcgaaatatg atgtcatcca      3900
     aaaataccca gtacccaaaa acgccgatga agtaagacgc tatgtagcct tctgtaatta      3960
     ctataggaaa tttatacaaa acttttcgga aatcgctcaa ccattaaata aattactaag      4020
     aaaaaacaca ctatttgaat ggtccgatga atgccaccaa tcttttgaac ttttgaaaac      4080
     aaagcttcta caaccaccac ttcttcaata tccggatttc cagaaggaat ttatactaac      4140
     aactgatgca tcatcaacag cttgtggcgc tgttctctca caaaagtata acgaagtgga      4200
     gctcccaata gcatttgcaa gtagaacctt tacaaaaagt gaactaaaca aagcaattat      4260
     tgaaaagaac tagccgcaat acattgggct atagaatatt ttaaaccata tttgttggga      4320
     cgaaaattcc gagtgaaaac agatcatagg cccttagtat atttatttgg aatgaagaaa      4380
     ccttccaata aattacagag gattcgtctt gacttggagg aatatgactt cgaaatagag      4440
     tatgtaaaag gtaagcagaa tgttatcgct gatgctcttt cacgcatcaa cattacttca      4500
     gctgaactaa aaacaatcaa tgtaataacc agaagcatga ctaaaaagaa aaaccccgaa      4560
     gaggataaag taagcatctt gcagccagat aaacttagga tgttcaacgc tctttcattt      4620
     gaagaagttt taaatcttcc aaaattagag tttggtataa taaacgaact aaatagtgta      4680
     atctgtacac caaaaataaa aaataaaact agcaaaaagg acctcttatt agtaagagga      4740
     atccatttga ataataaagg aaatgatgca ttagtgcact tattccaaag tatagaaaaa      4800
     gatgcaatta aattaaactt gaaccagctg gcactatcta ctgatgatga aatttttgag      4860
     tttataaccg cagaagcatt aaaaaagata gcaaatatat ccatggaaag tattgaaata      4920
     ttattatatg aaaaaccaaa aattataaaa gatccaagaa tggccgctga aattctcaag      4980
     aaaacccaca acagtccaac cggagtacat ctgggtcaaa ctaaaatgta tattaagcta      5040
     agaaaagagt tctattggaa aaagttcaag gaatcaatcc aaaattttgt aaacaattgc      5100
     aaacattgta agatgaataa acaccaaaaa ccaactcatg aaaaatttat aaaaactaca      5160
     actccttgca gaccgtttga aattatttcg gtagatacca ttggaccatt cctaaaaaca      5220
     aactataaca ataggtacgc agttaccata caatgtgata ttacaaaata tgttacagtt      5280
     atttcaatta taaacaaaga agcctcaaca gtagccaaag cagtggtgga aaaatttatg      5340
     ctaacatacg gaacaaatat aacagccgtt aggactgaca tgggaacaga atataggaat      5400
     gaattattca agagcatagg aaagttattg aaatttgaac ataaattctc cacgccatat      5460
     cacccacaga ctatcggtgc gttggagagg aatcacaagt gtctaaacga gtacttgcga      5520
     attttcacta acgaacatat taatgattgg gatgaatggg ttaactacta cacattcgca      5580
     taaaacacct ctccaaatct agatcacgga tatacgcctt tcgaacttgt ctttggtaga      5640
     acagaaaaaa ttcagaacca atcccttaca gaggtagtac aaccacttta taactatgac      5700
     gattacgcaa aagagctgca atatagactt ttaggcctat ataaggattt t               5751
//
ID   Gypsy-104_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   supercont1.206;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-104_AA_;
KW   Gypsy-104_AA-I; Gypsy-104_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.206; Positions  119155  118997.
XX
SQ   Sequence 159 BP; 44 A; 44 C; 27 G; 44 T; 0 other;
     tgaatcaatg aatagacagt tcaattcggt ctttggacca agtaacaaca ggagttatta        60
     ctggaatatc accttccttc acaggcgatc atgcgtcatc tccctgcttc atcaagactc       120
     gtcggttcat cttcgcttcc caccaacgag actacatca                              159
//
ID   Gypsy-104_CQ-LTR repbase;    DNA;    INV; 1582 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   16-MAR-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Culex quinquefasciatus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Repetitive element; REP-2_CQ; Gypsy-104_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1582
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 605-605 (2011).
XX
RN   [3]
RP   1-1582
RA   Kojima K.K.;
RT   "Classified as a Gypsy LTR.";
RL   Direct Submission to Repbase Update (16-MAR-2021).
XX
DR   [3] (Consensus)
XX
CC   [3] Renamed from REP-2_CQ, and classified as a Gypsy LTR.
XX
SQ   Sequence 1582 BP; 441 A; 388 C; 339 G; 408 T; 6 other;
     tgtaaccttt tgaaaatcgg tttcaatata catactcgaa ccacaccatt aaccagcttg        60
     attagaaata aggaagattg taaataagtt agtcaatatt gtcagtaaat gtttaaatgt       120
     gcattgtatt tgttgttctg tgtttacacg tttgaacata tgatgatttc atgtttattg       180
     agcgtccagg ttggtgtctt tcagatttag gagttttgtt attcctatta aattatttat       240
     ttatctattt gttatttgtt attacaatat tacttacatt tattattcaa aattagcatg       300
     caaccttaaa attagggaaa aaggcctttt gtatctgaga caccaaccca tatgaacatt       360
     gtgatcaccs cgcccctgca aacaccatcg tcatcgccgt cgtcagtgtc atcgagctgt       420
     caccgatccc tgtggcaaaa caggaaacag ttctggaggg aacagctagg cggcgcataa       480
     atacgggcgc agacgatggt gtcggcctct tttgcatttt ggtccggagt ggtgaagacc       540
     agtgatcgcc ccgcttgatc gtccgtcacc acacgacacg ggaagaaagt tcgcgagtgt       600
     aatttaaaaa tcctaattaa aattacacga aaaacattgg ttacgaaaca gtgaagtgcc       660
     acaaacaaat taaaaccaat aagcctaaag agtacggatc ggagtgagac agcaccacgg       720
     acggttagac gtacaccaca acacgttaaa aattcctaac cgagttaggt ccctccggtc       780
     gccatcgtac ggatccgagc gagcgtggtg caagaacwag aacctgcagt gaagtgtagt       840
     gaagtggtcg ggactggccg cacgaagcac cgcggtgctg agtgccgagt ggcacaccgt       900
     maaacctgtt ggccagcccc cgagtcaaag actccccagt ggtacctcgc tcggatcgac       960
     cacttccccc cctttcgcgc gtgcaccacc ctccggaccc gcgaactcga ccctccgcta      1020
     caaatagggt ccgcgatcac gtgctttggc ggtctccttc tgagaccgcg ccgacaccaa      1080
     cctgtggccc tctggggcga agccaagaag aagacgccck ctcggcggtc caaccggacc      1140
     cgccgttcgt tccctcctgt tccggaaccc gaccagcagc agcagccatg wcagcgacgc      1200
     aacaagccgg ccaccgagca tcaggatccc aacgataaaa cgcatgcatg caagtaccgt      1260
     acacaaatac acgttaaaat tggatccccc cgtctttccc ttwatttatt acccctaaaa      1320
     gttcttaaaa ttattgaaag tcttaaaatc taaataaaaa gttaaaatgt ggtctcaatc      1380
     aagctgtgtt tgtcctattt atttaaaatc ctaaatatta gtctttggtt gaaaattagt      1440
     gtggttcacg tgagtatgaa atgtttgtct ttgtgtgaga aatctccggg tagatacgtg      1500
     tgccgcccta tggagcaatc cccctaaggg actccatgtg ctcgtctcat atatttaacc      1560
     ccagaatagt taattactat ca                                               1582
//
ID   Gypsy-105_AA-I repbase;    DNA;    INV; 5691 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-105_AA_;
KW   Gypsy-105_AA-LTR; Gypsy-105_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5691
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 5302042 5307732.
XX
CC   'AAAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           499..1992
FT                 /product="Gypsy-105_AA-I_1p"
FT                 /translation="MADSGKYVRSTVDGRDETNENEHERDESIESGHEQDG
FT                 NASEIDTEVSHGGDNSELSTNGSTTDMDSENGSSVSHCSSEYSTGSVDSTN
FT                 DSHDQDTPSKIKEPSTDREITLDKQANQDKRMEEIEKVLVDLSRAITQLQP
FT                 GIQQLASQPANPEADQSWNFSQQPAQPSSSYTTVRPEQIKSFPNGVRPNKM
FT                 WAEWFDFIENFELALSLHHGNDPVYKVKLLYLSLGQELQTIVKAANLRPSL
FT                 TDAHCYTAFVKNIENHLRSMTDIAAEHQAFLKMQQGKDVSTVAFHARLLKG
FT                 AKLCDYAGATDRFVRAQLLNGLRNKELVKAARVYSYDTNFIVQSSTRDETY
FT                 QEETADPIMDTNILEIGQGSGNYRKRTIQRQQSTYPHAKQHRMNSDVMWNS
FT                 QRRSDQPRRGDNINQHARNDQLDPQAQGRRTRCPRCNNFFHRNLQCPALSR
FT                 TCDVCGKRGHFAKACRSGPRTGRPKAVRLISEQPDAESSGDENMDYKKQVK
FT                 QG"
FT   CDS           2308..4086
FT                 /product="Gypsy-105_AA-I_2p"
FT                 /translation="MPVECTFKAVIVVPETNKPSVVATFYVVPDGSRSLLG
FT                 RSTAHDLKLLQIGKNVNSLESTHDSTFPKMPGVQVKFSVNPTIPPTKNAYY
FT                 NVPAAFREAARERIHDMEKRGIIEKVTKAPHWISGMSAVAKGKSDFRLVVN
FT                 MRAPNRAINREYYRLPLLDEMRVKLHGAKYFSKLDLSNAFHHLELDEESRD
FT                 LTTFLAENGMYRFTRLMFGVNCAPEIFQREMARLFTSMDNVIVYIDDILIF
FT                 AETLDELRQTVDKVHQILRENNLTLNTTKCEYDKSSIKFLGHLLDGDGFHV
FT                 DEEKIRSLRNFREPSTISELRSFLGLASYISAYVRNFAGLSRPLWDTVTKK
FT                 TWTWGKEQKEAFERIKDHIVHCTTALGFFSDTDKTILYTDASPVALGAVLV
FT                 QESRNHNPRIISFASKALTVTEQKYAQNQREALSAVWGVEHFSYFLLGRHF
FT                 TLRTDAQGVAFILNRSREESKRALTRADGWALRLSPYSYEVEYVVGKDNIA
FT                 DPPSRLYIGEDEPFNDDVSPWEIGRLEANSIEILTEEEIVQATSLDAALQH
FT                 VVTALETGQWSNVDKTYYNIREELSMRDGIIIKTGCAIIPASLQVQ"
FT   CDS           4188..5270
FT                 /product="Gypsy-105_AA-I_3p"
FT                 /translation="MKSIMRQRVWWPGLASMVQKWVESCMTCLTNGKPERP
FT                 PPMQRIFAPKVVWEAIAIDFNGPYVLLGGISILVIIDYRSRYLFAKPVKST
FT                 SFECTKKVLEEIFEIEGYPKSIRSDNGPPFNGSEYKAYCEQRGIKTVFSTP
FT                 LYPQQNGLVESSMKIINKAMSAAISNKNNYIVELREAVHAYNAASHSITRF
FT                 PPEEIMLGRKVRRGLPLINPERTPMNDALLDERDRKAKLQGKQREDLRRGA
FT                 RKSRVLPGDSVIIQRQTRSKGQSRFSPTRYTVADENNGSLLLHSADGQSIK
FT                 RHVTQTKRVFQEQIVPFPGDAADVSAPNTLSEPSDAANAPEPAKHCSRRGD
FT                 RPKKIPAYLDQYVRSIQQ"
XX
SQ   Sequence 5691 BP; 1817 A; 1321 C; 1239 G; 1314 T; 0 other;
     ttggcgatcc ttgccagttg aaaaaaaccg aactgagctt tgcatacagc atctgattgg        60
     aaaaaaaaac gcgcctgcag aaataaattt gggaaaatcg ccccaaacac gcaagaaata       120
     atgcctatca tgctttaatc gtttcaaaac gacgccgcat tgaaaacgct aaataaaatt       180
     caatatccgc aaaatgacgc cattttgtaa gctgcaaaaa aaaatgctct aatcgtttca       240
     aaacgatgcc acgtggtagc tgcaaaaaac gcataatgct ggcgatatcc atccctaagc       300
     gcttgacaat atctttcaat gatttgcaaa acaaaataaa aaaaccgctt ctggagataa       360
     aaatatcgca tgtcaataaa aaaaaaaaaa aaaagatcta ctaattttcg acaactgcta       420
     gataattaat gccatacgtc taaactttgc aggtgaaatt cgaagattcc aaacaacatt       480
     cccaaacaac tgcagaaaat ggcggacagc ggcaaatacg ttcgatcaac ggtagatgga       540
     cgcgacgaaa cgaacgaaaa tgaacacgag cgggacgaat caatcgaaag cgggcacgag       600
     caagacggaa atgctagcga gatcgacacg gaagtaagcc atggtgggga caacagcgaa       660
     ctttcaacaa acggcagcac taccgacatg gacagcgaaa acggaagcag cgttagccac       720
     tgcagcagcg agtatagcac gggaagcgtt gactctacga acgattctca cgatcaggat       780
     actccatcga agataaagga gccgagcacg gatcgcgaaa ttaccctcga taaacaggca       840
     aaccaggaca aacggatgga ggagatcgag aaggtattag tggacctttc aagagcaatt       900
     actcaattgc agcccggaat tcaacagctt gcttcacagc cggcaaaccc agaggctgat       960
     caaagctgga atttcagtca gcaacctgcg caaccatcga gctcatacac gaccgtacgc      1020
     cctgaacaaa ttaaatcttt tccgaacggc gttcgcccga acaaaatgtg ggctgaatgg      1080
     tttgatttca tcgagaattt cgaacttgcc ctgtcattgc atcacggtaa cgatccagtt      1140
     tacaaggtta aactactgta cctgtcactc ggtcaggagc tacagacaat tgtcaaggca      1200
     gctaacctcc gcccaagcct aaccgacgcg cactgctata ctgcattcgt gaagaacatc      1260
     gaaaaccact tacgatcaat gacggacata gcagctgaac accaagcctt cttaaaaatg      1320
     cagcaaggaa aggacgtgtc aactgtagct ttccatgccc ggctattaaa aggcgcaaag      1380
     ctctgtgatt atgctggtgc gacagaccga ttcgtgcgag ctcagctatt gaacggcctg      1440
     aggaacaaag aattggtcaa agcggctcga gtctatagct acgatactaa tttcatcgta      1500
     cagtcatcta ctcgagatga aacataccag gaagaaacag ctgaccccat catggatacc      1560
     aacattctgg aaataggtca aggctccggg aattatcgaa aaagaaccat tcaacggcag      1620
     cagtctacct atccacacgc caagcaacac agaatgaatt cagatgtgat gtggaattca      1680
     caacgccgtt ctgaccaacc gagacgagga gataacatca accaacatgc aaggaatgac      1740
     caactcgacc cccaagcgca aggacgtcgc acacgctgcc caaggtgcaa caatttcttt      1800
     caccgcaacc tacagtgtcc tgcactatcc cgcacgtgtg atgtttgcgg caaacgaggc      1860
     cattttgcca aagcttgtcg atcaggacca aggacaggac ggccaaaagc ggtacgacta      1920
     atctcagagc aacccgatgc tgaatcgtcc ggtgatgaga acatggatta caaaaagcag      1980
     gtaaagcaag gttaatcatg catacctaaa tataattgaa gtgaataaac gtttagcgta      2040
     aacaattctt ttattacaat cccaacaaaa ccgtccaaat ttctctttta gaacctgtac      2100
     gcccttactc tagaggacgt actagtcggc tgcagtatcg gatccgcaaa acctataggt      2160
     tttcttatcg actctggagc cgatgttaat gttatcgggg gaaacgattg gattaacttg      2220
     aaacgagaat accacgcggg gtttgcaaaa ttacagatca tttccacacc ccagaaaagt      2280
     ctgcatgctt acgcttcagc taaaccaatg cccgttgagt gcaccttcaa agcggtaatc      2340
     gtggtacccg agacaaacaa accatcagtg gttgctacat tctatgttgt ccccgatggt      2400
     tcaagatcat tgttagggcg atccacggca cacgatttga agcttcttca aattgggaaa      2460
     aatgtcaaca gtctcgaatc aacccatgat agcacattcc ccaagatgcc gggtgtacag      2520
     gttaaattca gcgtgaaccc gacaatccct ccaaccaaga atgcttatta caatgttcct      2580
     gcagcattca gagaggccgc ccgtgagaga atacatgaca tggagaagcg cggtataatc      2640
     gaaaaagtga cgaaggcacc ccactggatt agcggcatgt ccgccgtagc taagggcaag      2700
     tcagactttc gactcgtagt taacatgagg gcgccgaata gagctatcaa tagagaatac      2760
     tatcggctgc cactactcga cgagatgcgt gtcaaacttc acggtgcgaa atacttttct      2820
     aaattggatc ttagcaatgc gttccaccac cttgagctgg atgaggagtc acgtgactta      2880
     acaacctttc tcgctgaaaa cggtatgtac cgtttcacaa ggttgatgtt tggagttaat      2940
     tgtgcccctg aaatcttcca acgtgagatg gcccgtttat tcaccagtat ggataatgtc      3000
     atagtctata tagacgacat cctcattttc gcggaaacac ttgacgagtt acgccaaact      3060
     gttgacaaag tacaccaaat acttcgagaa aataatttaa ccctcaatac cacaaaatgc      3120
     gaatacgata agagcagcat taaatttctc ggccatctgt tagacggtga tggcttccat      3180
     gttgatgaag agaaaattcg aagtctgcgt aattttcggg aacctagcac tatctcggaa      3240
     ctaagaagtt ttctcgggct cgcttcttac attagcgcat atgtgaggaa ctttgcaggg      3300
     ctatcacgac cgttatggga cactgttact aaaaaaacct ggacctgggg caaggaacag      3360
     aaagaagcgt tcgagcgaat taaagaccat atagtccatt gcacaaccgc cttaggattt      3420
     ttctcggaca cagataaaac tatcctgtac actgacgctt cccccgtcgc attaggtgcc      3480
     gtcctcgttc aagagagcag aaaccacaat ccaagaataa taagctttgc atcaaaagcc      3540
     ctcaccgtga ctgagcaaaa atacgctcaa aaccaacgcg aggccctcag cgctgtttgg      3600
     ggagtagaac acttctctta ctttctctta gggagacatt tcactctccg cactgatgct      3660
     caaggagtag cgtttatcct taatcgctct cgagaagaat caaagcgagc ccttactaga      3720
     gcagatgggt gggcactccg attgagccct tacagctatg aggttgaata tgttgtcgga      3780
     aaggataaca ttgccgatcc accatcacgg ctttacatcg gtgaagatga gcctttcaac      3840
     gatgacgtaa gcccatggga aatcggaaga ttagaagcta actcaattga aatacttacc      3900
     gaggaagaga ttgtccaagc cacatcactg gatgcagcgc ttcaacatgt ggtgacggca      3960
     ttggaaactg gacagtggtc gaacgtagac aagacctact ataatattcg cgaagagtta      4020
     tccatgcgag atggtataat aataaaaacc ggatgcgcta tcatcccagc gtccttacag      4080
     gtacagtgac aaattttcct atgacttaaa ctaattaata ataatggtaa tccttacagg      4140
     aaaaagcatt aagggttgca cacgaaggac atccgtccat tgccaaaatg aaaagtataa      4200
     tgaggcaacg agtttggtgg ccaggactag cgtctatggt gcaaaaatgg gttgaatcat      4260
     gcatgacctg cctaacaaac ggcaagccag agcggccacc tcctatgcaa aggattttcg      4320
     ctccgaaagt tgtatgggag gcgatagcaa tagatttcaa cggtccttat gtcctactcg      4380
     gaggtatatc cattcttgtt atcatcgatt acaggtcgag atatttgttt gcgaaacctg      4440
     tgaagtccac aagcttcgaa tgcacaaaga aagttctcga agaaattttt gaaatcgaag      4500
     gatatccgaa gagcatccga tcagacaatg gacctccgtt caacggatcg gagtataagg      4560
     cttactgcga acaacgagga ataaagacag ttttctctac gccactatat cctcagcaaa      4620
     atggattggt ggaaagcagt atgaaaatca taaataaggc aatgtctgca gctatttcca      4680
     ataaaaacaa ctacattgtc gaattgcgcg aggccgtgca tgcttataat gctgcaagtc      4740
     acagcataac tcgatttcca cctgaagaaa ttatgctggg caggaaagtt cgccgtggat      4800
     tgcctttaat caaccccgag agaacgccca tgaatgatgc actgctggat gaaagagatc      4860
     gcaaagcgaa attgcaagga aaacaacgtg aagatcttcg tcgtggtgca aggaagtcgc      4920
     gcgttttgcc cggagatagc gtaatcatac aacgtcaaac acgtagcaaa ggacaatcaa      4980
     ggttctcccc cacgagatac acagttgcag acgagaataa tggcagcttg cttctacact      5040
     ccgcggatgg ccaatccatc aaacgacatg tcacgcaaac gaagagggtt ttccaggagc      5100
     aaatcgttcc attccccggt gacgccgctg atgttagtgc tccaaataca ctaagcgaac      5160
     ctagcgatgc agcgaatgca ccagagccag caaaacactg cagccgcaga ggcgatcgtc      5220
     cgaagaaaat tccagcctat ttagaccagt acgtccggtc tattcaacaa taatccacgg      5280
     aaacactttc catttcgtta cttggagatg taaaacacct gaaatgatat tattaatcaa      5340
     taaaattgat tgaatttacc ttttagaaga aattctgttg tgcttcttat cgagctgttt      5400
     gtttttgttt cactttccgt tcgtcctcat tttaagtaaa atgacatttg tttcatggtt      5460
     tcattacacc accccacaat acaccgcttc gtttacgccc actccatccc acacggggaa      5520
     aacaaagtac actcgaatct cgttgtacca tatatatggg caggctatgt tatagttaag      5580
     ctactgctta tcaggttaga acactgattg tagcataatt gagtgtaggc gatgtaatgg      5640
     aattactttt gccttggttg agaacatcac aaattttgag aaggggggag a               5691
//
ID   Gypsy-105_AA-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   supercont1.2;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-105_AA_;
KW   Gypsy-105_AA-I; Gypsy-105_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2; Positions 5301854 5302041.
XX
SQ   Sequence 188 BP; 50 A; 49 C; 42 G; 47 T; 0 other;
     tgtgtggcat acataacggt cagtgtgact ggagctttac tttagccaaa aacattccgc        60
     cgttgcattt gacagttcat cgtcgttaaa cgggatacgc tcaacacaaa tgcatgcgtg       120
     cgactcgtcc actctttcgt caaccatcct cgaggtaagt cacgctacta ggaaacagga       180
     gctgcaca                                                                188
//
ID   Gypsy-106_AA-I repbase;    DNA;    INV; 4793 BP.
XX
AC   supercont1.333;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-106_AA_;
KW   Gypsy-106_AA-LTR; Gypsy-106_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4793
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.333; Positions  567062  562270.
XX
CC   'GTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..1222
FT                 /product="Gypsy-106_AA-I_1p"
FT                 /translation="MSTTPIPTDSGSQSKSGQKDITALFAELTSSIAVKFE
FT                 QLNDKISNNLDEMRSEVKEFSVELERVKNDVSHLKNVRDFSAAINALQFSD
FT                 NPVYQSSPNASKTDAPTPFPNNEVFGGPSSRVASPQGLTSLADRNQLNQGN
FT                 VNSGETRAMNDLSIVNTGLKVKLTPEVFDGTKRWADYVLTFELTADINHWD
FT                 EALKAKYLAAMLRGPALEVLRSLTPVQRASYVFLKAALEKRFGETFHRALH
FT                 HAQLRSRQQHKGEDFITFADEIRRLVASAYHDCSAVAQDKIAMNHFLDGLG
FT                 DPVVQDLVRFGLPDTLDKAVQLALQFHLSRSATRSNHKPVRLVRDTDAQNS
FT                 SSDSETTSLCEENVYGLRSAGTQTYRSPAHKPTVDDETSIAAKGIRETIGR
FT                 QPKGA"
FT   CDS           1758..4772
FT                 /product="Gypsy-106_AA-I_2p"
FT                 /translation="MPMLLEGTLDHPDLFIAKILVCVKNEKVPIRIMNTSQ
FT                 FPVNISLGTVIANCSSVQVIDKTKHVVDLQNDSLHLQSVITKSTKHLDAKQ
FT                 KERFVKLITENHDVFSKGSHDMGRTSLTQHRIDTGNHSPIKIPPRKNPLAK
FT                 RECATQLVHQMQKEGIIEPSQSPWCSPIVLVKKKDGSQRFCVDYRKLNDIT
FT                 KKDSFPLPRIDLTLEALGGSSWFSTIDLQSGFWQVEMDQHDKEKTAFSTGN
FT                 DLWQFKVMPFGLCNSPATFQRLIELVLHGLSWHFCLIYMDDIIVHSKSFEE
FT                 HVVHLNEVFSRLRAANLKLNPAKCAFLQREVAYLGHVVSADGVHTDPEKIK
FT                 SVLEWERPLNKTQVRSFIGLCAYYRKFIRDFSTIARPMHKLMEHHTPFIWD
FT                 EECEQAFERLKQKLLEAPVLAYPWDDTEFVLDTDASYCGIGAVLSQVQEGN
FT                 ERVVAYYSKSLSKAERNYCVTRKELVAVNKAVQHFHHYLYGRHFKLRTDHT
FT                 ALTWLRSFRNPEGQVARWIERLSQYDFTSEHRPGTRHGNADGLSRRPCFDL
FT                 GCKHCSRLERDVTDKAKGDAQPCNRIGAVDDAFKLGQQSDLVLQQVIQWVQ
FT                 SGKRPTFEDTSQLDSTTRSYWTMFDSLLVHNGVLCRNFVGPHNEFLQVIVP
FT                 KKMVQYVMEQIHGGLTGGHYGVAKTLIKVKERFYWVGLSRDVKLWCMNCTV
FT                 CGARKGPSTRSRGELKPILVGEPFRMIGVDILGPFPITERGNRWILVITDY
FT                 FTKWPEAVALPSQTAEVVADALLSTVVSRFGVPQQIHSDQGKNFESEVFGC
FT                 LMDLLGVNKTRTTPLHPQSDGQTERFNRTLLDYLSKFIDKDQKIWDTLLPL
FT                 LSYRASTHESTKFSPAILNLGRKLVLPIDLWRSSSPDALHSGPSYVQKIRE
FT                 NMQRIHEEVRNNLSVAAESMKRRYDYKSNATTFNVGDLVWLFNPQRRIGKS
FT                 PKLQCDWEGPYKILRRISDLVYEIKKDAIGSRKKIIHVDRLASFKGSRDG"
XX
SQ   Sequence 4793 BP; 1440 A; 996 C; 1141 G; 1216 T; 0 other;
     ctggtgtcag aagtggggtt acgtcatgtc taccacaccg attcctacag actccggctc        60
     acagtccaaa tccggtcaga aggacattac tgctttgttc gctgagctca cttcatcgat       120
     tgccgtgaaa ttcgaacagc tgaatgataa aatcagcaat aatttggatg aaatgcggtc       180
     cgaagtaaag gagttcagtg tagaactgga acgcgttaaa aatgatgtta gccacttgaa       240
     gaatgtgcga gattttagtg cagcgataaa cgccttgcag ttttcggata atcctgtcta       300
     tcagagctca ccgaacgcct cgaagacaga tgcaccgaca ccttttccaa acaacgaagt       360
     atttggaggg ccaagttcga gagttgcatc gcctcagggg ttaacgtcgc ttgcagatag       420
     gaatcagtta aaccaaggga acgtaaacag tggtgaaact agagcgatga atgacttatc       480
     gattgtcaat accggactca aggtaaagtt aactccggaa gtgtttgatg gtacgaagcg       540
     gtgggccgat tacgtattga ctttcgaact aacagccgac atcaaccact gggacgaagc       600
     actgaaagca aaatatctag cagctatgct tcgtggccct gctttggagg tgttgcggtc       660
     actgacgccg gtccaaagag cgagttatgt ctttttaaag gcagctctag aaaaacggtt       720
     cggcgagacg tttcatcgag ctctgcatca tgctcaactg cgatctcgtc agcaacataa       780
     aggagaagat tttatcacat tcgcggatga aattcgtcga cttgtagctt ccgcttacca       840
     cgattgctcg gcagtcgctc aagacaaaat tgcaatgaat cacttcctcg acggcctcgg       900
     tgatccagtt gtgcaagatc tcgtcagatt tgggctgcca gacacattgg ataaagcagt       960
     gcagcttgcg ctacaattcc acctttcacg tagtgccact aggtccaacc ataagcctgt      1020
     tcgactcgta cgagacacag atgcacaaaa tagtagttcg gattcagaaa ccacgtcttt      1080
     gtgcgaagaa aatgtttacg ggttgcgatc ggccggcaca caaacctaca gatcgccggc      1140
     acacaaacct acagtagacg acgaaacaag tatcgcagca aaaggaattc gggaaacgat      1200
     cggtcgccag cctaaggggg catgagctgg ccgagaacag tggtccccca aacatcttgt      1260
     ttgtgcattc actgaatcgt cgacgtggta gttatttagc cgatttacgt attgatggtg      1320
     ttccttgtga agctgtcgtg gattgtggag ctgctgtgac aatcataagc cagaagtttt      1380
     ggaagctaat tgagaagaat attacccagc aacaatcatc aaaattcatc aagacggtgt      1440
     ccggagaact cgttccagtg aatctggaaa ccacagttgt gtttaacttc ggaaggtacg      1500
     cagtaacaca tccggtatgg attgttgata tatcggagga ctgcatcatc ggaaacgatt      1560
     tcctgagaga acatcaatgt atcatcgatt ttgtgaggaa caagctagag atctctaaaa      1620
     atacatccat ccaattgcgt ccagcgtcag gttcaagtaa agaaaccaag gttttccatg      1680
     tgacgaccga aacagaatta gaaattcctg cttggagtga aaccattgtc caaggaaaat      1740
     gcgaacatcg ttcgagaatg cctatgctct tggaaggtac tttggatcat ccagatttat      1800
     tcattgccaa aattctagtc tgcgtgaaga atgaaaaagt gccaataaga ataatgaaca      1860
     cctcacaatt tcctgtgaat atatcgctcg gaaccgttat cgccaactgc tcaagtgtcc      1920
     aggtaattga taaaactaaa catgttgtgg atttacaaaa tgacagttta catttacagt      1980
     ccgtgataac gaaaagtaca aagcatcttg acgcaaaaca aaaggagcga ttcgttaagc      2040
     tgattacgga aaaccatgac gttttcagca aaggatctca tgatatggga cgcacgagtt      2100
     tgacgcaaca tcgtatagac acggggaatc attcgccgat aaaaatacca cctcgaaaaa      2160
     atccgctggc taaaagagaa tgtgcaacac agttggtgca ccaaatgcag aaagagggca      2220
     tcattgaacc gtcgcaaagc ccatggtgtt cacctattgt gctggttaag aaaaaggatg      2280
     gaagtcaaag gttttgtgtt gactacagga aactgaacga cattactaaa aaagattcct      2340
     tccctctccc cagaatcgat ttgacacttg aagctcttgg cggttcgagc tggttttcca      2400
     ccattgatct acaaagcggt ttctggcagg tggagatgga ccaacacgac aaagagaaaa      2460
     cagctttttc gaccggtaac gatctttggc aatttaaagt tatgccgttt ggtctgtgta      2520
     acagccctgc aacattccag agattgatag agctcgttct gcatgggtta tcctggcact      2580
     tctgtttaat ttacatggac gacattattg tgcattccaa gagcttcgaa gagcatgttg      2640
     tccacctgaa tgaagttttt agtcgcttgc gtgctgctaa tttgaagctt aacccagcta      2700
     aatgtgcgtt tttgcaacgg gaagtagcct accttggtca cgtagtatca gcggacggag      2760
     tgcacaccga tccagagaaa ataaagtcag tattagaatg ggaaagacca ctcaacaaga      2820
     cgcaagtacg aagcttcatt ggtctgtgcg cttattaccg gaaattcata agagactttt      2880
     caactatagc ccgaccgatg cataagctga tggagcatca tacaccattt atatgggacg      2940
     aagaatgtga acaagcattc gagagattaa agcaaaaact gttggaggcg ccagtcttag      3000
     catatccttg ggatgatact gagttcgtgt tagatacgga tgccagctat tgcggcattg      3060
     gggctgtact ttcgcaagtc caggaaggca acgagcgggt tgtagcatac tacagtaagt      3120
     cactatccaa ggcagagcgt aattactgtg tcacgagaaa agaattggtc gctgtaaata      3180
     aagccgtgca acatttccac cactatctgt atggaagaca ttttaaattg cgaacggatc      3240
     atacagctct cacatggctt cgcagtttcc gtaatcctga aggacaagtt gctcgatgga      3300
     ttgaaagatt gtctcagtat gattttacta gtgaacatcg ccctggaact cgacatggaa      3360
     atgcagatgg gctttcaagg agaccttgtt ttgaccttgg atgtaaacat tgtagtagat      3420
     tggaacgcga tgttaccgac aaagccaaag gtgacgcaca gccttgcaat cgaataggtg      3480
     cggtcgatga tgcgtttaaa ttaggccagc aaagtgactt agtgttgcag caagttatcc      3540
     agtgggtaca gagcgggaaa cgtccaacgt ttgaagacac atctcaactt gattcaacaa      3600
     ctcgaagtta ttggacaatg ttcgacagtt tgttggtgca taacggtgtt ctttgtcgta      3660
     attttgtagg cccacataac gagttcttgc aagtaattgt ccctaagaag atggtgcaat      3720
     atgtgatgga acaaattcac ggaggtttaa ctggtggtca ctatggtgtt gcaaaaactc      3780
     ttataaaggt caaggaacgg ttctactggg tcggactctc aagagatgtc aagctatggt      3840
     gtatgaattg tacggtgtgt ggtgctcgaa aaggaccaag tactagatct cgaggagagt      3900
     taaagcctat acttgtcggg gaaccatttc ggatgattgg agtcgatatc ttgggaccat      3960
     ttccaataac cgagagagga aatcgatgga tactcgtgat tactgattac ttcacaaaat      4020
     ggccagaggc cgttgcccta ccatcacaaa cggcagaagt ggtagcagat gctctgcttt      4080
     caactgttgt atcaagattt ggagttcctc aacagattca ttctgatcaa ggcaagaatt      4140
     tcgaaagtga agtatttgga tgtttaatgg atttacttgg ggtcaataaa actcgcacca      4200
     cgccgttgca tcctcaatct gatggacaga ccgaaagatt caaccgtact cttcttgatt      4260
     acctgtccaa atttatcgat aaggatcaaa agatatggga cacattactg ccactgttga      4320
     gttaccgagc atcaacacac gaatcaacga agttttcacc agctatcttg aatttgggcc      4380
     gtaaactggt actgcctata gacttatgga gaagctcatc tcctgacgca cttcattcag      4440
     gtccatccta tgttcagaag attagagaaa acatgcagcg tattcatgaa gaagtaagga      4500
     acaacttgag cgtagccgca gagtcaatga agaggcgcta tgattacaaa tccaatgcta      4560
     caacattcaa cgtaggggac cttgtgtggt tattcaatcc gcaacgtcgt ataggaaaat      4620
     caccaaaact ccaatgcgat tgggagggcc catacaaaat actgcgacga atcagtgatt      4680
     tagtttacga aatcaagaag gatgccattg gtagtagaaa gaagataatc catgtggatc      4740
     gattggcttc ctttaaaggt agccgggacg gctaggaccc aagaaggagg cag             4793
//
ID   Gypsy-106_AA-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   supercont1.333;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-106_AA_;
KW   Gypsy-106_AA-I; Gypsy-106_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-275
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.333; Positions  562269  561995.
XX
SQ   Sequence 275 BP; 85 A; 46 C; 63 G; 81 T; 0 other;
     tgttacggat acgccctttg catttgccgc agatggtaag gacaatagaa acgtcaacgg        60
     ataacgggga gaagtgagaa ttacacagaa cagaattcag tcacatgtag aacgtggata       120
     ataaaacaca tgaattacac atatatgtaa cgttatcgct atttattcgt aattattcga       180
     aagtctcatt acttttatac gcgcggggta gtttcgttcg gtacttagcc ggtgctaaga       240
     gtttcgtgag tgtttagtta gcgaatttcg taaca                                  275
//
ID   Gypsy-107_AA-I repbase;    DNA;    INV; 4479 BP.
XX
AC   AAGE02029780;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-107_AA_;
KW   Gypsy-107_AA-LTR; Gypsy-107_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4479
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029780; Positions   32786   28308.
XX
CC   Positions [3451-3969] - Integrase core
CC   'GAGGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..4452
FT                 /product="Gypsy-107_AA-I_1p"
FT                 /translation="MDTNQFKMFLEHQTNIFHQLMQSVNATATSVAAATTS
FT                 SLKQQQHQENHQRPCAANVPVPQPSPLALEGDMEENFNFFVKSWNDYSQAI
FT                 GMNEWPPGDNAKKVSFLLAIIGEPARKKYNNFELTAEESATTELALKAIKT
FT                 KVVAKRNVIVDRLDFFSAVQASRETVDDFCARLRNLARISKLGDLESELMT
FT                 YKLVTANKWSNLRTKMLTMSDITLEKAVDICRAEEITEKRSQELNYTVPES
FT                 DVNKITKGKPRTKHSKPPRCKFCGDAHEFTKGTCPAFGKRCRKCNGKNHFE
FT                 RVCQAAMKRRSRWSRKVREVREEGSSDEETTSADESTEESEQEYEISKIFD
FT                 NSDSGGGVTAELEMNFTKTWKSVLCDLDTGANTSLIGFNRLLELTGQREPM
FT                 LQPSNLKLQSFGGNPINVLGQVKVRCRRLGRKYRLVLQVVDVDHRPLLSAK
FT                 ASREFGFVKFCKTVEFDSSRPNTTTDDKMLKVYRVQAQRIINEHQELFEGY
FT                 GKFPGEVNLELDESVQPIIQPPRRVPIALREDLKKELEALEQSGIIVKEQN
FT                 HTSWVSNLVLVQRGGPNSGIRICLDPVMLNKALRRPNLQTTTLDEILPELG
FT                 KARIFSTLDTKKGFWHVVLNEESSKLTTFWTPFGRYRWTRLPFGIASAPEI
FT                 FQLKLQQVIQDLEGVECIADDLLIYGIGDTMEEALKNHNRCMTMLFHRLKE
FT                 SNVKLNRAKLNICQTAVRFYGHVLTNRGLRPDESKLLTIKNYPTPGNRKEV
FT                 HRFVGMVNYLSRFIRNLSVNLTNLRKLIVETVPWKWTSAEQNEFDQVKALV
FT                 SNIDTLRYYDVTKPLTIECDASCFGLGVAVYQCDGIIGYASRTLTSTERNY
FT                 AQIEKELLAIVFACTRFDQLIVGNPKTTIRTDHKPLLNVFHKPLLTAPKRL
FT                 QHMLLKLQRYNLDLEFVTGKNNVVADALSRAPVANEEGSSTYEKRHVYEVF
FT                 EEMSQVKLSSFLSVSDSRLAEIVEHTGRDSNMQTIISYIQHGWPNTVDRVS
FT                 DGAKIFFAHRHELSTQDGLVFRGDRIVVPHSLRRKLVDSCHASHNGVEATL
FT                 KLARSNLFWPGMSSQVKDVVKQCSVCAKFAASQANPPMRSHPIPVYPFQMV
FT                 SLDVFFSDYKGLKRKFLITVDHYSDFFEVNILKDLTPESVIAVCKENFARH
FT                 GIPQVVLSDNGTNFVNHKMIQFASDWGFQQTTSAPHHQQSNGKSEAAVKIA
FT                 KRLLKKAEESGSEFWYALLHWRNIPNKIGSSPVARLFARSTRCGIPTSANR
FT                 LLPKVVENVPSAIENQRKHNKKHYDRKVRYLPELKVGSPVYIQLEPASSKT
FT                 WTPGTVCNRLSERSYLVDVEGNKYRRSRVHVKPREEQIPSPSSEGSSGEIQ
FT                 NKGQGDNPSTGEDAGVTFQNIPFDESHAVINSDDFLAVSSTPPRIIPSTGY
FT                 ERPRRDIRRPARLVDYQLE"
XX
SQ   Sequence 4479 BP; 1361 A; 960 C; 1091 G; 1067 T; 0 other;
     tggtgtcaga agtcggcgcg agtttcccgt agtttatttc cggcgtcatt tgtgtacatc        60
     gcggaaaatc ggtctcgaaa gtgaatcggg cggcgacgcg acagcggcca ttttgttttc       120
     ggtgaaaaaa cgaattggta gatcctcatc gacatggata ccaatcagtt taagatgttt       180
     ttggagcacc aaacgaacat tttccaccaa ttgatgcaat cagtgaacgc aacagctacg       240
     tcggtggctg cggcgacaac atcatcgtta aaacaacagc agcatcaaga aaatcatcag       300
     cgtccatgtg ctgcaaatgt tccagttccg cagccatctc cactagcact ggagggggac       360
     atggaggaaa attttaattt tttcgtcaag agctggaacg actattctca agcaatcggc       420
     atgaacgagt ggccacccgg tgacaatgct aaaaaagtga gttttttgct ggccattatc       480
     ggggaacccg ctagaaagaa atacaataat ttcgaactca ccgccgagga atcagcaact       540
     acggaattgg cattaaaggc catcaaaacc aaggttgttg ctaaacgcaa cgttatcgtt       600
     gacagactgg attttttctc agcggttcaa gcatctcgag aaacagtcga tgatttctgc       660
     gcccgcctca ggaatttggc aagaatttcc aaactgggcg atctcgaatc ggaactcatg       720
     acgtacaagc ttgtcactgc gaataaatgg tcaaatttgc gtacgaaaat gttgacgatg       780
     tccgatatta cattggaaaa agcagtagac atttgtcgtg ctgaggaaat cacggagaaa       840
     aggtctcagg agttaaacta cacggttccg gagtcggatg tcaataaaat cacaaaaggt       900
     aaacctcgaa caaagcattc gaagcctcca aggtgtaagt tctgcggaga tgcccatgag       960
     ttcacaaaag gaacttgtcc ggcttttgga aaacgctgtc ggaaatgtaa tggtaaaaat      1020
     cattttgaaa gggtgtgtca agcagcgatg aaacgcagga gtcgttggtc ccgaaaagtt      1080
     cgagaagtga gagaagaggg cagttcggat gaggaaacga ctagcgcaga tgaatcgaca      1140
     gaggaaagcg aacaggaata tgaaataagc aagattttcg acaattcgga cagcggtggt      1200
     ggcgtaactg cagagctgga aatgaatttt accaaaacgt ggaaatcagt actctgcgat      1260
     ctagacacag gagccaacac cagcttgatt ggtttcaacc gtttattgga gcttacagga      1320
     caacgggaac caatgttaca gccatcgaat ctaaaattgc agagcttcgg tggcaatccg      1380
     attaatgttt tgggacaagt gaaagtgagg tgtcgtcgtt tgggccggaa gtatcggttg      1440
     gtactgcaag tcgtcgatgt agatcaccgt cccctactct ctgccaaagc atcacgtgaa      1500
     tttggtttcg tcaagttctg taaaacggtc gagtttgatt cgtcaagacc aaacacaacc      1560
     actgatgata agatgttaaa agtgtacaga gttcaagcac aacggatcat taacgaacat      1620
     caggaattat tcgaagggta cgggaagttt cctggtgagg tgaatctgga actcgatgaa      1680
     agcgttcaac caataataca gccacctcga agagtcccga tcgcattacg tgaagatctc      1740
     aagaaagaac tggaagctct ggagcaaagt ggcatcatcg tcaaggaaca aaatcatacc      1800
     agctgggtca gtaatctggt cctggtgcaa agaggtggac caaactcagg cattcgaatt      1860
     tgtttggatc cagtgatgct gaacaaggca ctgcgtagac caaatctgca aacaacaacg      1920
     ttggatgaaa tcctcccaga gcttggaaag gctcgtatat tttctacgct agacacgaag      1980
     aaggggttct ggcatgtggt tttaaacgag gagagcagta aacttaccac gttttggaca      2040
     ccctttggaa ggtaccgctg gactcgacta ccattcggaa tcgcatcagc accagaaatc      2100
     tttcagttaa agctacaaca ggtaatacaa gatttggaag gtgttgaatg cattgcggac      2160
     gacttactca tatatggaat aggagataca atggaagaag ccttgaaaaa tcacaatcga      2220
     tgcatgacga tgctgtttca tcgactgaag gaaagcaatg tgaaactgaa tcgtgcgaag      2280
     ttgaacatct gccagacggc ggtaagattt tatggacatg tgctgaccaa tcgaggacta      2340
     cgaccagatg aatcaaagct gcttaccata aaaaattatc caactccagg caacaggaag      2400
     gaagttcata ggttcgttgg aatggttaac tatcttagcc gcttcatacg aaacctgagc      2460
     gttaacctta ccaaccttcg caagcttatt gtggaaaccg taccatggaa atggacttct      2520
     gcggaacaga acgagttcga ccaagtaaaa gcccttgtat ccaacatcga cacgctgcga      2580
     tattacgacg ttaccaaacc tttgactatc gagtgcgacg ccagctgctt tggtttgggc      2640
     gtggcagtct accaatgcga tggaatcatc ggttacgctt caaggacatt aacttctact      2700
     gagcgaaatt atgctcaaat agaaaaggag ttgttagcaa ttgtcttcgc ttgtaccaga      2760
     ttcgatcaat tgatcgtcgg aaatcccaaa actacaataa gaaccgacca caaaccgctc      2820
     ctgaatgtat tccataaacc cctgttgact gcaccgaaac gcctgcaaca tatgctgttg      2880
     aaacttcaaa gatataattt ggatctggaa tttgtgacgg gcaaaaataa tgtggtagca      2940
     gacgcgctat cacgtgctcc ggtcgccaac gaagagggtt cgagcaccta cgaaaaacgc      3000
     cacgtctacg aagtgttcga agaaatgtcc caagtgaagc tcagcagttt tctcagcgta      3060
     tcagattcga ggttggcaga aattgtcgaa cacactggga gagattcgaa tatgcagact      3120
     atcatcagct acatccagca tggttggcct aacacggtgg atcgagtatc agacggcgct      3180
     aaaatattct tcgctcatcg ccacgaattg tctacccaag acggcttagt gttccgtggt      3240
     gatcgtattg tagtgccaca ttccttgaga agaaaacttg ttgatagctg ccacgcaagc      3300
     cataatggag tagaggccac gttgaagcta gctcgatcca atttgttttg gccgggtatg      3360
     agttcgcaag tgaaggacgt cgtaaagcaa tgctcagttt gtgcgaagtt cgctgcatca      3420
     caagcaaacc caccaatgag aagtcatccg atcccggtat acccatttca aatggtatcg      3480
     ttggacgtat ttttttccga ctataaagga ttgaagcgta agtttttgat aacggtggac      3540
     cattattcgg actttttcga ggtgaacatt ttgaaagatt taacgccaga gtccgttatt      3600
     gctgtctgca aagagaattt tgcacgccac ggcattccac aggtggtact atccgacaac      3660
     gggactaatt ttgtcaacca caaaatgatt cagtttgctt cggattgggg attccaacaa      3720
     acaacatcag cgccacacca tcagcaatcg aacggtaaat cggaggctgc ggttaagatt      3780
     gcaaaacgtt tgttgaaaaa ggctgaagaa agcggatcgg aattctggta tgccttgctc      3840
     cactggcgca acattccaaa caaaatcggc tcaagtcctg tggcgcgttt gtttgcccgt      3900
     tcaacaagat gtggaatacc gacgagtgcg aaccgattac ttccaaaagt ggttgaaaat      3960
     gttccatctg caatagagaa tcaacgtaaa cacaacaaga agcattacga cagaaaagtt      4020
     cgctacttac ctgagctgaa agttggttcg ccagtataca tccaattgga accggcgtca      4080
     tccaagacgt ggacaccagg aaccgtctgt aaccgattga gtgaacgttc ctaccttgtg      4140
     gacgtggaag gaaataagta ccgacgaagc cgtgtacatg tgaagccacg cgaagagcaa      4200
     attccatcgc ccagctcgga gggatcgtca ggtgaaattc aaaacaaggg acaaggtgat      4260
     aatccatcga caggtgaaga cgctggagtg acatttcaaa atatcccatt tgatgaatcg      4320
     catgctgtga tcaattcaga cgactttctt gcggtttcat caacaccgcc gaggataata      4380
     ccaagcactg gatatgaacg cccgagacga gacattagac ggccggcgcg tttggtggac      4440
     tatcagctgg aatagatctt cttcttattg tggggagga                             4479
//
ID   Gypsy-107_AA-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   AAGE02029780;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-107_AA_;
KW   Gypsy-107_AA-I; Gypsy-107_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029780; Positions   28307   28120.
XX
SQ   Sequence 188 BP; 56 A; 37 C; 38 G; 57 T; 0 other;
     tgttgcagta tgtagcgacc cctcgtattc tctcccattc cattcatgcg atttacgcac        60
     ccatacttgg agagtcagta cagagtagag tgacagacag cttggctgta gagcagagtt       120
     tgctccgtga attcgataaa taaaagtttg ttaaatagtt aaaaccgtgt ttatttaatc       180
     ataaaaca                                                                188
//
ID   Gypsy-108_AA-I repbase;    DNA;    INV; 4619 BP.
XX
AC   AAGE02028575;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-108_AA_;
KW   Gypsy-108_AA-LTR; Gypsy-108_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4619
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028575; Positions   24987   20369.
XX
CC   Positions [3452-3946] - Integrase core
CC   'TATGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..4591
FT                 /product="Gypsy-108_AA-I_1p"
FT                 /translation="MDPEQFRLFMEQQSNMITQLITTVTQQRPQQLPQVQQ
FT                 AQPPVSSVPVPPPSSLSVEGDMAENFDFFERSWKNYESASGMDKWPVDNNE
FT                 RKVSVLLSVIGETGRKKYFNFELTQQQLADPDQALAAIKDKVVVKRNIIID
FT                 RLDFFTATQFSNELVDDFKTRLRIMAKMAKLDTLENELITYKLVTANKWPH
FT                 LRTKMLAITDITLDKAVDLCRAEEIAARRSQELGVVVSSSEVNKISKGQPK
FT                 QKSPRCKFCGDYHEFAKGVCPALGKRCNRCRKKNHFEKVCKLKSRKSRRVK
FT                 QVKEPDDTSDTSSRESESESEESDEEFEIGKIFDNSNTGGSVLAELNLKFG
FT                 GTWKSVLCELDTGANTSLIGHECLMKLSGLPDFPLKPSKIRLQSFGGNPIK
FT                 VLGQVKVPCRRLDRKYGLVLQVVDVDHRPILSANASKALGFVKFCNTVTFE
FT                 GPNFPSASSKLPQEVLLNVYRVKAQQMVDRHHGLFEGYGRLPGEVTLEIDQ
FT                 SITPSIQPPRRVPIAKRSQLKTELENLEKDGIIVKETSHTEWVSNIVIVQR
FT                 GGPGSGVRICLDPIFLNKALKRPNLQFVTLDEILPELGKAKVFTTVDAKKG
FT                 FWHVVLDEPSSKLTTFWTPFGRYRWIRLPFGVAPAPEIFQLKLQEVIQDLE
FT                 NVECIADDILVYGVGNTMEEALQNHNECLEKLLSRLDQHNVKLNRSKLKLC
FT                 EKSVKFYGHILTDQGLKADESKIAAIREFPQPINRKEVHRFVGMVTYLSRF
FT                 IRNLTSSLTNLRNLISESVPWRWTAIEEKEFNQVKKMVADVKSLRYYDMNK
FT                 PLIIECDASSIGLGAAVFQNDGVIGYASRTLTAAEKNYAQIEKELLAILFA
FT                 CVRFDQLVVGNPKTTIRTDHKPLLNVFQKPLLSAPRRLQHMLLNLQRYNLS
FT                 LEYVTGKENVIADALSRAPLQDVQPNDEYRKRNIFKVFDEVQGVKLSNLIS
FT                 VSSSRLDEIMRETEKDKSIQQLINYIQQGWPETIDRVPDNVKIYFCYRNEL
FT                 STQDGLVFRNDRILIPYALRRKLVDCCHASHNGISATLRLARANIFWPGMS
FT                 SQIMEIVKNCPVCAKFAPSQQNPPMQSHPIPIHPFQIVSMDVFFCEMQGAK
FT                 RKFLITVDHYSDFFEVSLLKDLSPESVVAVCKQNFARFGVPQRVITDNGTN
FT                 FANQKMASFASEWDFELATSAPHHQQANGKAESAVKIAKHLMKKADESEAD
FT                 FWYMLLHWRNIPNNIGSSPAARLLSRSTRCGVPTAATNLLPKVEEDVPAKI
FT                 EENRKRAKLHYDKKSRNLPELHVGSPVYVQLNPESNKHWTQGTVSNKFNDR
FT                 SYLVSANGTEYRRSLVHLKPRKESATQPDREVPSHPDRPVMCEVIPVSSLF
FT                 PGSNEKSATTVLDQISNDNTIGQPPTSTEIATTASAFACASPKQSRTSGER
FT                 TATTPMTTTTAASPVPTGSKSRGVQPITPSKNNRPKREIRIPEKLKDYQIK
FT                 F"
XX
SQ   Sequence 4619 BP; 1377 A; 1039 C; 1148 G; 1055 T; 0 other;
     tggtgtcaga agcaaacgtg agcttctagt gaattccggc gtcattaagt gaaatcgcgg        60
     aaaactacga actttttcga aagtagtgtt tgaaaggcgc gcgtgaacat ttcgagtcgc       120
     gttggtggcc attttgtatc gaaagatttt gtttgtttac aatcgagtgt gttgtgcggg       180
     attcctcatc gatatggatc cggaacaatt tcggctgttc atggaacagc aatcaaatat       240
     gatcacccag cttatcacca ctgtgacgca gcagcgtcca cagcaactgc cgcaagtcca       300
     gcaggcacag ccaccggttt ccagcgtacc ggtgcctccg ccgtcgtcgt tatcggtaga       360
     aggagatatg gccgaaaatt ttgatttttt tgagcgaagt tggaagaact atgaaagtgc       420
     tagtggaatg gacaagtggc cagtggacaa taatgaaagg aaagtgagtg tactgctatc       480
     ggttatcgga gagacgggaa gaaaaaagta tttcaacttc gagttgacgc agcagcagtt       540
     agccgatccg gaccaagcgc tagcagctat caaggacaaa gtggtagtaa agaggaacat       600
     catcatcgat cgtctcgatt ttttcacggc cacgcaattt tcgaacgagt tggttgatga       660
     ctttaaaact cgactacgaa taatggccaa gatggcgaaa ctcgatactc tggagaacga       720
     gctgatcacg tacaagcttg tgacagctaa caagtggcct cacctaagaa cgaagatgct       780
     cgctatcacg gatatcacac tggataaggc tgttgacctt tgtcgcgctg aggaaatagc       840
     tgccagaagg tcgcaggagt tgggagttgt ggtttcgagc tcggaagtga acaaaatttc       900
     aaaaggccaa ccaaagcaga aatcgccgcg ttgcaagttt tgcggtgatt accacgaatt       960
     cgccaaagga gtgtgcccag cattggggaa acgctgtaac cgctgcagga agaagaatca      1020
     tttcgagaaa gtgtgcaaac taaaaagccg aaaatccagg agggtcaagc aggtgaagga      1080
     accggatgat acatcggata cgtcgtcacg ggaaagtgaa tcggaatcag aagagtcgga      1140
     cgaagaattc gagattggga agatattcga taactctaat actggaggaa gcgtcctggc      1200
     ggagctgaac ctgaaattcg gtggcacatg gaaatcagta ctatgcgaac tggatacagg      1260
     cgcaaacacc agcctgattg gtcacgagtg tctgatgaag ctatctggat taccagattt      1320
     tccactgaaa ccgtccaaaa tccgattgca aagttttggt ggcaacccga taaaagtcct      1380
     tggtcaagtt aaggtaccat gtcgccgatt ggacagaaag tacggtctcg ttttgcaagt      1440
     tgtggatgtc gatcaccgac cgatactatc cgcaaatgcc tctaaggcac ttggattcgt      1500
     gaaattttgc aacaccgtta cctttgaagg accgaatttt cctagcgcct catctaaact      1560
     accacaggaa gttcttctca acgtgtatcg agtgaaggct cagcagatgg tggacagaca      1620
     ccacggtttg ttcgaaggct acggtaggct tcctggagaa gtaacgttgg agatagacca      1680
     aagcatcact ccatcgattc aacccccgcg gcgtgtaccc attgcgaaga gaagtcagct      1740
     gaaaactgag ttggagaacc tcgagaaaga cggcatcatc gtaaaagaaa cgtcgcacac      1800
     tgaatgggtg agtaacatcg tgattgtaca acgaggagga ccgggttcag gcgttcgtat      1860
     atgcttagat ccaattttcc tgaacaaggc cttgaagcga ccaaatttac agtttgtgac      1920
     tttggacgaa attttgccgg aactcgggaa ggcaaaagtt ttcaccacgg ttgatgcaaa      1980
     gaagggtttc tggcacgtgg ttctggacga gcctagtagc aagttaacca ctttctggac      2040
     gcctttcggt cgttatcggt ggatacgtct accattcgga gtggcaccag caccagaaat      2100
     attccagctt aagttgcagg aggtgatcca ggatctcgag aacgtcgaat gtattgctga      2160
     tgacattctt gtgtacggag ttggtaacac tatggaggaa gcgctacaga atcacaacga      2220
     gtgtttggag aaacttctgt cccgactcga tcaacacaac gtgaaactca accgatcgaa      2280
     gctgaaactt tgcgaaaagt cagtgaaatt ctatggccac atactcaccg atcaaggatt      2340
     gaaagctgat gaatccaaaa tagcagcaat ccgagaattc ccacagccaa tcaaccgaaa      2400
     ggaagtacat aggtttgtag gaatggttac atacctaagt cgcttcatac gaaacctgac      2460
     tagcagctta acaaacctac ggaacctgat ttccgagtcg gtaccatgga gatggacagc      2520
     gatcgaagag aaggagttca accaggtgaa gaaaatggta gctgatgtga agtccctgcg      2580
     ttattacgac atgaataagc cgctgattat cgaatgtgac gccagtagca tcgggcttgg      2640
     agcagcagtg ttccaaaacg acggagtcat agggtacgca tcgaggacct tgacagctgc      2700
     ggagaagaat tacgcgcaga tagagaaaga gcttctcgca attctcttcg cctgcgtaag      2760
     attcgatcaa ctagtggtcg gcaatccgaa aactacaatc cgtactgatc acaagcctct      2820
     cctaaacgtg ttccaaaagc cgctcttgtc ggcacctcgt aggttgcaac acatgctgct      2880
     caatctacaa cggtacaact tatctcttga gtatgttacc ggaaaagaaa atgtcatcgc      2940
     cgacgcgtta tcgcgtgcac cgttgcagga tgttcagccc aacgacgagt acagaaaacg      3000
     aaatatcttc aaggtgtttg acgaagtcca aggagtaaag ctgagcaacc tcatcagtgt      3060
     gtcaagttca agactggatg aaatcatgcg ggaaacggaa aaggacaaat cgattcaaca      3120
     gctcatcaac tacatacagc aaggatggcc tgaaacaatc gaccgagtac cagacaacgt      3180
     gaagatatat ttctgctatc gaaacgaatt gtctacccag gatggattgg tgtttcgcaa      3240
     cgaccgcatc ttgattccgt atgctctgcg aaggaaacta gttgattgct gtcacgctag      3300
     tcacaacggg atttccgcta cccttaggct agctcgggca aacatcttct ggccggggat      3360
     gtccagtcaa ataatggaga tcgtaaagaa ctgccccgtt tgtgcaaagt ttgctccatc      3420
     ccaacagaat cctccgatgc aaagccaccc gataccgatt catccttttc agatagtatc      3480
     catggatgtt ttcttctgtg agatgcaggg cgccaagaga aagtttctga taacggtgga      3540
     tcactattcg gacttctttg aggtcagtct gctcaaggat ctaagccccg aatctgttgt      3600
     cgcggtgtgc aaacagaact ttgcaagatt tggagttcct caacgagtta tcaccgataa      3660
     tggaaccaat tttgcaaatc agaaaatggc tagttttgca tccgaatggg atttcgaatt      3720
     agctacgtcg gcaccacatc accaacaagc caacggcaag gccgaatcag cagtgaaaat      3780
     tgccaagcac ctgatgaaga aggcggatga gagcgaagct gatttctggt acatgctgtt      3840
     gcattggcgc aacattccaa ataacatcgg ttccagcccg gcagctcgac ttttgtcccg      3900
     ttcgacacgc tgtggtgtgc caactgcggc tacgaatcta ctcccgaagg tagaggaaga      3960
     tgttccagct aaaattgaag agaatcgaaa gcgagcgaaa ttgcactacg acaagaaatc      4020
     acgcaactta ccagaactgc acgttggttc acccgtatac gtgcaactga atccggaatc      4080
     aaataaacat tggacccaag gaacagtgtc aaacaagttc aacgatcgat cgtacttggt      4140
     gagcgccaac ggaacggaat atcgtcgttc actggtgcac ctgaagccac gcaaggaatc      4200
     cgctacgcag ccagatcgtg aagtgccatc tcatccagat cgtcctgtaa tgtgtgaagt      4260
     aattcctgtt tcatcgttgt tcccgggctc aaacgaaaaa tctgctacta ctgttttgga      4320
     tcaaattagt aacgataaca caatcggaca accgcctact tcgaccgaga tcgcgacaac      4380
     tgcatcagca tttgcatgtg catcaccaaa acaatcgcgt acgtctgggg aaagaacagc      4440
     aacgacgccg atgacaacaa caacagcagc atcaccggtg ccgacaggat cgaagtcaag      4500
     gggggttcag cccattacac cgtcgaagaa taaccgtcca aagagagaaa ttcgaattcc      4560
     ggaaaagctc aaagattatc agataaagtt ctaattagtc ttttaaggaa aagggaaga       4619
//
ID   Gypsy-108_AA-LTR repbase;    DNA;    INV; 191 BP.
XX
AC   AAGE02028575;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-108_AA_;
KW   Gypsy-108_AA-I; Gypsy-108_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-191
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02028575; Positions   20368   20178.
XX
SQ   Sequence 191 BP; 57 A; 26 C; 49 G; 59 T; 0 other;
     tgttgtatca ttgacacacc cctagattgg tagcatcttg agagtagagt agtattggta        60
     gcgcagtgta gagagtagag cggaagtaag atgaacgtcc attgtcttgt attcgcgtgt       120
     ggagtaaaga tcgtcagagg aataaactaa gttaatacgt ttaattctgg tcttttattg       180
     cgaatataac a                                                            191
//
ID   Gypsy-109_AA-I repbase;    DNA;    INV; 4636 BP.
XX
AC   AAGE02027654;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-109_AA_;
KW   Gypsy-109_AA-LTR; Gypsy-109_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027654; Positions   20580   15945.
XX
CC   Positions [2018-2638] - Reverse transcriptase
CC   Positions [3644-4105] - Integrase core
CC   'CACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           950..4606
FT                 /product="Gypsy-109_AA-I_1p"
FT                 /translation="MLRCQEQSNKCDFGKSAEESRSISVIDKVILFAPSDL
FT                 KEQLLQKDNLTIDDVTKIVSSYESVKHQARAISSSTGGVSENAMFGHESAS
FT                 GVNRIRPSTSKECTRCGRKGHYANDISCPARNKECNKCRRSGHFANQCRTN
FT                 VSLKRKFDESAISNKRLKAERIREIRSNQGDTKDRSFIFNINDGDELLWMK
FT                 VGGVLLQVMVDSGCKRNIVDERSWNYLKANGVKTWNQKKDCDEVFLPYGAN
FT                 AKPLTVLGAFDTSVVVEDAGKVMERVATFYVIQGGQQCLLGRTTATELGVL
FT                 FVGLPSKQGVNSVRIDEKRPFPKIKGVKVTIPIDKTVPPVCQHPRRPPIAL
FT                 LAKIEDKLNSLLTNDIIEPVEGGCQWVSPLVTVIKDNGDLRLCIDMRRANV
FT                 AIVRERHMMPTIDDFLPRFTGAKYFSRLDIKEAFHQVELDEDSRYITTFIT
FT                 HMGLFRYKRLMYGIVIAPEIFQRILEQILSRCSEHTVNFIDDILVFAETES
FT                 EHDAALDLVLSTLKEYGVLLNQAKCVFKVQRLDFLGHILSSEGIQPALDKI
FT                 AAIQQFRPPSSQEEVRSFLGLVTYIGRFLPNLATVTAPLRELTCSGIKFEW
FT                 GKDQQRAFSILKEMISNVNLLRFFNNSLRTRVIADASPVALGAVLIQFEGT
FT                 TDDDPRPIAYASKSLTQTERRYCQTEKEALALVWAVERFSPYLLGRKFELE
FT                 TDHKPLEAIFKPTSRPCPRIERWVLRLQSFTFVVKYRKGKSNIADPLSRMV
FT                 EPGITEDFDAENKFMVLAVLESAAIDVQELEESARMDRVLDLVKTSLQTGN
FT                 WDESDVKPYVPFKNELGMVGDTIVRGGKLVVPTNLRQRMLDLAHEGHPGES
FT                 VIKRRLRDRVWWPGMDREVSNRVAVCEGCRLVGLPSKPEPMSRRPLPSKPW
FT                 VDVAIDFLGPLPNGMYLLVIIDYYSRYKEVELMSRITAKDTVCRLDKIFTR
FT                 LGYPRTITLDNAKQFVGIEFEEYSKKHGIHLNHSTPYWPQENGLVERQNRS
FT                 LLKRLQISNALGRDWQQDLQDYLVMYYTTPHSITGRTPTELLYGRTIRSKI
FT                 PAVDDIETAPPLTDFADKDLESKEKGKDQEDKRRKSKRSSVEIGDSVLMQN
FT                 LLPGNKLQTTYMPKKYVVVSRSGPRATVEDPESGKSYDRNVAHLKKLKDPV
FT                 EPPTSLNSGDSTNEADCELNVASSEDEFYGFEDELPSKVAPPERQQRVRKK
FT                 PAKYVDYQL"
XX
SQ   Sequence 4636 BP; 1345 A; 972 C; 1186 G; 1133 T; 0 other;
     ttggcgactg aggaaaactg gaaagcagga gaaattggaa aaattaggta tgaattcagt        60
     aatttatcag aacgattatt cgaacgggaa aagtttgttt tgcgaaatgg aggaaaatga       120
     ggttatgttt acatttattt ttctttcttc agactgctat actacgctcg tagtggctgt       180
     tccgcgcagc ggattttgta tgctaccaaa gagtagcggc tgtttatcag cgatttacta       240
     cgagaaggat aagactactt aaaagtagtg gctgtcttga acagcgatag tggtaggcta       300
     ccaagcggta gcggctgtaa acaatcagcg acatttaccc aaccactagt acggaaaggc       360
     taccggctgt agcggctgtg gaacagcgtt tgacagacca caaaggtggc cttagagcac       420
     aaggaaggct acgtgaaagt agcggctctc agagcggtgt gtaaccacac agtggctgca       480
     gctctaaggc ggaaaatcta gaaattgacg gtaaggttga gtttaagata agaaatgaac       540
     gaggaaataa tcccaagctt aattttagtt attctgaaac cgttgaaacg ttgcaatgga       600
     aaagtgggac attcctcaat tccatttcaa agctcttgag aggaatgcgg tgcgcaacga       660
     gtggatgaaa tataagcgaa atttcgattt catagttgct gccactggag agactgataa       720
     aactcgcatc cgaaatattt tccttgcgaa gggcggaccg gacctccagg aagtattcac       780
     gtctattccc ggagctgacg tgcaggatga tgctgaaaac ggagttgatt cctatgcagt       840
     tgctattgcc aaactagacg cttactttgc gcccaaacaa cacgatacat ttgagcgcaa       900
     cttgttttga acattaaaac cgagtctgga cgagactctg gtgaaattta tgctccgttg       960
     ccaagagcaa tccaacaagt gtgatttcgg gaagtccgct gaagaaagcc gatcgatcag      1020
     tgttatcgac aaggttatcc ttttcgctcc tagcgatttg aaagagcaat tgctgcaaaa      1080
     ggataatctg accatcgacg atgttacgaa aatagtgagc tcctacgaat cagttaaaca      1140
     tcaggctcga gcgatcagct cctcaactgg tggagtttct gaaaatgcca tgtttggtca      1200
     tgagtcggcc agtggtgtta acaggattcg cccctcaaca tcgaaggaat gcacacgctg      1260
     tggaagaaag ggccactatg cgaacgacat cagttgtccg gcgagaaata aggagtgcaa      1320
     caaatgcagg cgtagtggac acttcgccaa tcaatgtcga acaaatgttt cccttaagcg      1380
     taagtttgat gagtcggcta tcagcaacaa acgcctaaag gcagagcgta ttcgcgagat      1440
     aagaagcaac caaggcgata caaaggatcg gagcttcatc ttcaacataa atgatggtga      1500
     cgaattgctt tggatgaaag taggcggcgt actgctacag gtgatggtcg actcaggctg      1560
     caagaggaat attgtagacg aacgatcgtg gaattactta aaggcaaatg gtgttaaaac      1620
     atggaaccag aaaaaggact gcgatgaagt attcctccct tatggtgcaa atgcaaagcc      1680
     cctgacggta cttggtgcgt tcgacacttc tgttgtggtt gaagatgccg gcaaggttat      1740
     ggagagggtt gccacttttt acgtgataca aggtggtcaa cagtgcctac tgggtagaac      1800
     aactgctacc gaattgggcg ttctgtttgt tgggttacca agcaagcaag gtgtcaactc      1860
     agtgagaata gacgaaaagc gtccgtttcc taaaatcaaa ggggtaaagg tcaccattcc      1920
     gatcgacaag accgttccac ctgtctgtca acacccaagg cggccaccga tcgctctact      1980
     agcaaaaatc gaagacaagc taaactccct tttgacaaat gatatcattg aaccggtgga      2040
     aggcggttgt caatgggtgt cgcccctggt aacggtgatc aaagacaacg gtgatttacg      2100
     cttatgcata gacatgcgcc gggcaaacgt cgcgattgtg agagaacggc acatgatgcc      2160
     cacaattgat gactttctgc cacgcttcac gggtgccaag tattttagcc gtctcgacat      2220
     caaagaagct tttcatcaag tagagcttga tgaagacagc cgttatataa cgacgttcat      2280
     tacacacatg ggtctgtttc gttacaaaag gcttatgtat ggaatcgtga ttgccccgga      2340
     gatatttcaa aggatactcg agcaaatact gagccgatgt agcgagcaca ccgtgaattt      2400
     tatcgacgac atcttagtat ttgctgagac cgaaagcgaa cacgacgcag cgcttgattt      2460
     ggttctgtct acccttaagg agtatggagt gttgttgaac caggccaaat gcgtattcaa      2520
     ggtccaacgg ttggatttct tgggacacat cctttcctca gaaggtatac aacctgcgct      2580
     ggataagatt gctgctatcc aacaattccg cccaccttct agtcaggaag aagtccgtag      2640
     tttcttaggc cttgttacgt atatcggacg tttcttaccg aatttggcca ccgtcactgc      2700
     tccgcttcgg gagttaactt gttctgggat caaatttgaa tggggaaaag atcaacagcg      2760
     agcattttcg atactgaagg aaatgatttc aaacgtaaac ctactgcggt tcttcaataa      2820
     ctcattacgt acacgtgtta ttgccgacgc ttcgccggtt gcattaggcg ctgttttaat      2880
     acagtttgaa ggcacaacag atgatgatcc tcgtccaatt gcgtacgcga gcaaaagcct      2940
     gacccaaacc gagcgtagat actgccaaac cgaaaaagag gctttagctc tggtttgggc      3000
     agtggagcgg ttttcgccat atctactggg ccgtaaattc gaactggaga ctgaccacaa      3060
     acctcttgag gctattttta agccgacatc acgaccgtgc cctcgcatcg aaagatgggt      3120
     ccttcgactc cagtctttca cgtttgtggt taaatatcgt aaaggaaaaa gcaacattgc      3180
     tgacccgctt tctcggatgg ttgagccagg tattactgag gattttgatg cggagaataa      3240
     attcatggtt ctagcggtgt tggagtcggc ggcgattgat gtacaggaat tggaagagtc      3300
     tgcaaggatg gatcgagttc tggatctagt gaagacatct ttacagacag gaaattggga      3360
     tgaatcggac gtgaagccat acgttccgtt taaaaatgag ttgggtatgg taggagacac      3420
     aattgtccga ggaggtaaac tggttgttcc aacgaatctg cgtcaacgaa tgttggattt      3480
     ggcgcacgaa gggcatccag gagagtcagt tattaagcgc cgtctccgag accgagtatg      3540
     gtggccaggg atggaccgtg aggtcagtaa ccgagtagct gtttgcgagg gttgcagatt      3600
     ggttgggctt ccaagtaaac cagagccgat gtcacgtcgt ccgcttccta gcaagccgtg      3660
     ggtggacgtg gctatcgact tccttggtcc actaccgaac ggaatgtatt tgcttgtcat      3720
     aattgattat tacagtcggt acaaggaagt ggaactgatg agcagaatca cagcaaagga      3780
     tacggtttgc aggttggaca aaatatttac gcgattggga tacccacgga caattacttt      3840
     ggataacgcg aagcaattcg tgggcatcga attcgaggaa tacagcaaga aacacggcat      3900
     tcacctcaat cactccacac catactggcc ccaggaaaac ggcctcgtgg agaggcagaa      3960
     tcgatcactg ctaaagagac tgcaaataag caacgcttta ggcagggatt ggcaacaaga      4020
     cctacaagat tatttggtaa tgtattacac taccccgcat tctataacgg gccggacgcc      4080
     aacggaactc ctgtatggcc gcacgatacg atccaaaatt ccggcggttg atgacatcga      4140
     gacagcccct ccattgaccg attttgctga caaggatttg gaatcgaagg aaaaagggaa      4200
     ggatcaggag gataagcgac gaaaatcaaa gaggtcatcc gtcgaaattg gagactcagt      4260
     tctaatgcaa aatctgctac caggtaataa gctgcagacg acctatatgc ccaagaaata      4320
     cgttgtggtt tcccgatctg gtccacgcgc tactgttgag gatcctgaaa gcggcaaatc      4380
     atacgatcgg aatgtcgcac atcttaaaaa gcttaaagat cccgttgaac ctcctacatc      4440
     tttgaacagt ggtgattcaa caaatgaagc tgactgcgag ctgaatgttg cgtcgtctga      4500
     agatgagttc tacgggttcg aggatgaatt gccatcgaag gtagctccac cagaacgaca      4560
     acagcgtgta aggaagaagc cagctaaata cgtagattac cagttgtaac tttgaatttt      4620
     gaaaaaaggg gagatg                                                      4636
//
ID   Gypsy-109_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   AAGE02027654;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-109_AA_;
KW   Gypsy-109_AA-I; Gypsy-109_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-172
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027654; Positions   15944   15773.
XX
SQ   Sequence 172 BP; 51 A; 23 C; 47 G; 51 T; 0 other;
     tggtacttag ttacggccct gcgttaaatg agattcggga gcggggagta cggccctggt        60
     agagaaaatg tcaattattg ttgtttgaga gcgtggaaat aaaggacgtg tttgagtgaa       120
     ctgtaaaata aatattctat gttcttatga gtgcattacg cagaatatca ca               172
//
ID   Gypsy-10_AA-I repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_AA_;
KW   Gypsy-10_AA-LTR; Gypsy-10_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 989-989 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3141-3617] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4058
FT                 /product="Gypsy-10_AA-I_1p"
FT                 /translation="MTSENKSNPFQGSSVQKVAMLGRMDPFIPGEDFEVYM
FT                 KRLKMYFIANGIPDSLKAAVLITVMGNETFQILDSLFSPEDPCEKTFDQIV
FT                 DKLKNQFKPMVIVAAERYKLYTRKQKVNEPNAEYVVALKHLTQSCNFGTFL
FT                 ADALRDAFIIGIQNQKIRRRLLSEELCQAYKIASSMELANVEETKLNVDNG
FT                 LNHVVYRKKNVTSESVKRGGGITKQTIDQQKVKHCTRCGRSNHVNNKCPAA
FT                 NVMCYKCRLRGHFANQRRTRNVHSLQENDGDGSDDEIVDVISWVAEGNDPL
FT                 HVPVHVEGKEVIMEIDSGACKSIISEDEYREKFNHIKLKQGSKSFQVITGQ
FT                 KFRPLGVGEFRVSLPNTKNMIKLEMSVVQSEFKFKPLLGRSWLNALYPGWK
FT                 SRLVTRENNDLHLIDNVMNEAVKTDTEEMNSNFLKVLRDTYPQAFSEDSSV
FT                 PIKEFEVDIIMKEHTPVFHKAYELPFKMRESVEEELNRMVDGGILKPVKHC
FT                 RYASPIVAVPKSDGKSIRICVDCKRTINPFVQTEHYPLPRIDDILASFPGC
FT                 KVFCVLDLKGAYQQLALSEESKKYLTINTHKGLFQFQRLCYGVSSAPSIFQ
FT                 QVIDQILRGLKFVKSYIDDTLIGGKNYADCLNNLKLVLERLNMYNVHVNIA
FT                 KCSFFLPQVDYLGHTLSEKGISPNNDKIKAIVHAPSPTNNSQLLSYLGLLN
FT                 YYSRFLPNISSLLRPLYDLLKKNASFRWTEVHQKAFEDSKQLLLSNSLLEM
FT                 YDPNKKLIVSCDASPYGVGAILSHEINGELKPVIFASSTLSPAEQNYSQLH
FT                 REALAIMFAINRFHKYIYGYQFELHTDHEPLQAILNPKKCKNAIAVARLQR
FT                 WAVQLSMYNYVVKYKSSMKMRHVDALSRLPLMDETKVDFVKSLNISEEVPI
FT                 DLEMIRECSKTDPLIIKLIKLCQSGWTKMNHADPELKYYQKLQHCLSVEDG
FT                 CLVYRDRLVIPDQVKTNILRLLHEGHIGIVRTKMLARQYVWWRNIDSDIEE
FT                 FINECSVCQQTQKKTPSVTVPWPKPSAALERVHVDLFYFGKFTFFIIVDAF
FT                 SRWIEVFRLNTSNAKTIIDYFRKFIVTFGLPKEIVSDNGPPFNAYQFIDFC
FT                 NRQGIKVTKSPPYHPESNGLAERGVQTVKNTLKKCLLDLRYRTLTIDEQID
FT                 NFLFKYRNTPNAVSGFSPSEVMFKFKPKTLIDKLSIKQQCNPKTDYKTNNE
FT                 YVSKENIKSFKKGEKIMYMNHFKSFCKWIPGRIIDKLSRTLYRIEINDNVR
FT                 IVHVSSIRKSKLSDKYHPNVSTSSQVETRLPQVIIKKKIIKKNQNMQSKWS
FT                 DFSKLRRSQRKRKPPVFYKC"
XX
SQ   Sequence 4129 BP; 1400 A; 696 C; 864 G; 1169 T; 0 other;
     gttttggcga cgaagtggat taatcggtcg tgtgataagt cacgtgtgtc gtgcaagaaa        60
     caatgacgag tgaaaataaa tcgaacccgt tccaggggtc tagtgtacag aaagtggcga       120
     tgttaggccg gatggatccg tttattcctg gcgaagattt cgaggtgtat atgaaaagat       180
     taaaaatgta cttcattgct aacggtattc cggatagttt gaaagcggca gttttaataa       240
     ctgtgatggg taacgaaacg ttccaaatac tagattcgtt gtttagtcca gaagatcctt       300
     gcgagaaaac attcgatcaa attgtcgata aattgaagaa tcagttcaaa ccgatggtga       360
     tagtagcagc tgaaagatac aagttgtata cgcgaaaaca aaaagtgaat gaaccgaacg       420
     cggaatatgt cgtggctcta aagcatctca ctcagtcgtg taactttggt acatttcttg       480
     ccgatgctct ccgtgatgcg ttcataatcg gtattcagaa ccaaaaaatt cgaagacggc       540
     tactctctga agaactttgt caagcataca aaatagcatc tagtatggag ttagctaatg       600
     tcgaagaaac gaaacttaat gttgataatg gactgaacca cgtggtgtac agaaagaaaa       660
     atgttactag tgaaagtgtg aaacgtggtg gcggtataac aaagcaaaca atagatcaac       720
     agaaagtgaa gcattgtact cgatgcggga gatctaacca tgtgaacaac aaatgtccag       780
     ctgctaacgt gatgtgctat aagtgccgtt tgagaggtca ctttgcgaac cagcgcagaa       840
     cgcgaaatgt ccattcgctt caggaaaatg acggagatgg gagtgatgat gaaatcgtag       900
     acgtgatcag ttgggtcgca gaaggtaatg atccgttgca cgttccagtt cacgtagaag       960
     gtaaggaggt tattatggag attgatagcg gagcgtgtaa gtcaattatt agtgaggatg      1020
     agtaccgaga aaagtttaat catatcaagt taaaacaagg atcgaagtca tttcaagtta      1080
     ttacagggca aaaatttagg ccattaggag tgggagaatt cagagtcagt ttgccgaata      1140
     cgaaaaacat gatcaagtta gagatgagtg ttgtgcagtc tgagttcaag ttcaagccac      1200
     ttttaggccg gtcttggtta aatgcgttgt accctgggtg gaaaagcaga ttagttacac      1260
     gtgagaacaa tgatctacat ctgattgaca atgttatgaa tgaggcagtg aaaacggaca      1320
     cagaagaaat gaatagcaac ttcctcaaag ttttacgaga tacttatccc caagctttta      1380
     gcgaagacag tagtgtgccg ataaaggaat ttgaggtaga tattattatg aaagaacaca      1440
     ctccggtctt ccacaaggcg tacgaactgc cttttaaaat gcgggaatct gtggaagaag      1500
     aattgaatag aatggtagat ggtggaattt tgaagcccgt gaaacactgt aggtatgcaa      1560
     gcccaatagt agcagtcccc aaatcagatg gtaaatcgat tcgaatttgc gtagattgta      1620
     aacgaaccat taaccctttt gttcaaactg aacattatcc acttccccga atcgatgata      1680
     ttttagcgag ttttccaggg tgtaaagtgt tttgtgtcct tgacctgaaa ggcgcatacc      1740
     agcagctagc tttatccgaa gaatcaaaaa aatatttaac tatcaacacc cataaaggtc      1800
     tgtttcaatt tcagaggctg tgttacggag taagtagtgc tccttcaatt tttcaacaag      1860
     tcatagatca gattttaaga ggattgaaat tcgtaaaatc ctacattgat gatacgttga      1920
     taggtggtaa aaattacgca gattgcttga ataatttaaa actggttttg gaacgtctaa      1980
     acatgtacaa cgtacatgtg aacatagcga aatgtagttt ttttctgccc caagttgatt      2040
     atctcggaca cactctaagc gaaaaaggca taagtcccaa taatgacaaa atcaaagcaa      2100
     ttgtacatgc tcctagcccg acaaacaact ctcaactgct atcctattta ggactactga      2160
     attattattc acgatttctt ccaaacatta gcagtttatt gaggccactg tacgacctac      2220
     tgaaaaagaa tgcctctttt cggtggactg aagtacatca aaaagcgttt gaagatagca      2280
     aacaactttt gctgtcgaat agtttgttgg aaatgtatga tccaaataaa aagttgatcg      2340
     tttcttgtga tgcttctcca tatggagtag gagcaatttt gtctcatgaa attaacggag      2400
     aactcaaacc agtaattttt gcttctagca cattatcccc cgcggaacaa aattattcac      2460
     agttgcatag agaagcacta gcaataatgt tcgcgattaa tcgttttcat aagtatattt      2520
     acggatacca atttgagtta cacacagacc atgaacccct acaagctatt ttaaatccca      2580
     agaaatgtaa aaatgcgatt gcagttgcga gattacaaag gtgggcagtc caattatcta      2640
     tgtataatta tgtggttaaa tataaatcct ccatgaaaat gcgacacgtg gatgcgttat      2700
     caagattgcc attgatggac gaaacgaagg tagattttgt taaatcatta aatatctcag      2760
     aagaagtacc tatcgattta gaaatgatcc gtgaatgttc caaaacagat ccattgataa      2820
     ttaaattgat aaaattgtgt caatcgggat ggacgaaaat gaatcatgcc gatccggagt      2880
     tgaagtatta tcaaaagctt caacattgtt tatcagtaga ggatggttgt ttggtttatc      2940
     gagatcgatt agtgattcct gatcaagtta aaacaaatat tttgcgtttg ttacacgaag      3000
     gccacattgg aatagttcgt acaaaaatgc tggctaggca atatgtttgg tggagaaata      3060
     tcgatagcga tattgaagag ttcatcaatg aatgttcggt ttgccaacaa actcagaaaa      3120
     aaacaccttc tgttactgtg ccttggccta agccatcggc cgctttagaa cgagtgcatg      3180
     tagatctgtt ctattttgga aaattcacat ttttcattat tgttgacgct tttagtcgtt      3240
     ggatagaagt ttttcgtctg aatacatcta atgcaaaaac gattatagat tatttcagaa      3300
     aattcattgt aacgtttggg ttgccaaaag aaattgtgtc ggacaatggg ccaccgttca      3360
     atgcctatca gtttattgat ttttgcaacc gacaaggcat aaaagtcacg aaatcacctc      3420
     cgtaccatcc cgaatcgaac ggattagccg aacgtggagt tcagactgtt aaaaatacgt      3480
     taaaaaagtg tttacttgat ctcagatatc gtacattaac aatagacgag cagatagaca      3540
     actttttgtt caaatacaga aatactccta acgctgtctc tggattctct ccttctgaag      3600
     taatgttcaa atttaagcct aagacactaa ttgataaatt gtctattaaa cagcagtgta      3660
     acccaaaaac tgattataaa acgaataatg aatatgtatc aaaagaaaat attaaatcgt      3720
     ttaagaaagg agaaaagata atgtatatga accattttaa atctttttgt aaatggattc      3780
     ccggtagaat tatagacaaa ctctcaagaa cgttgtaccg aattgaaatt aatgataatg      3840
     taagaatagt tcatgtttca tccatacgaa aatctaaact cagcgataaa tatcacccca      3900
     atgtttctac tagctctcaa gttgaaactc gattaccgca ggttatcata aagaagaaaa      3960
     tcattaagaa aaaccaaaac atgcaatcaa aatggtcaga tttttcgaag cttagacgat      4020
     cgcaaagaaa aagaaaacct ccggtttttt ataagtgtta ggaaaactaa aaggggagaa      4080
     gtgtagtgta gagtcctacc tttcttgtag aagactatct tgcaaatgt                  4129
//
ID   Gypsy-10_AA-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_AA_;
KW   Gypsy-10_AA-I; Gypsy-10_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 990-990 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 192 BP; 56 A; 34 C; 42 G; 60 T; 0 other;
     tggtaatgta gtaaattata ttgttattca atagatttgt agacaatgaa cattgtactg        60
     tgtaaacttc cgctagcttt agtatataag gcgggagcac cccgatgggg ctctcttttg       120
     tatcccgacc gtagactaat aaagaagtct aagtgaaccc cgtgcgtttg tgagtatagt       180
     ccgaacatat ca                                                           192
//
ID   Gypsy-10_ACe-LTR repbase;    DNA;    INV; 2154 BP.
XX
AC   .
XX
DT   06-JUN-2012 (Rel. 19.03, Created)
DT   06-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-10_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-2154
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 742-742 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 2154 BP; 547 A; 640 C; 400 G; 567 T; 0 other;
     tgttacgtcc agcggactcc cacgactctt ttcgtggaga tctggaattc gttgaaataa        60
     aaagacagct gcgaataacg cacaagttga gcattatagc ctagagaaga ctaaaaattt       120
     tcttttccca cactaaaaac taaaacgaag aatccagtat ctcctcgtaa atgtcgttcc       180
     gagataaact aaaaatcggt gcacgtgcac gagcggcggg accaaaagga caccgagttt       240
     gtgcccctcg gacactgcgg ctaaaataat aataaatata tcattggaag cgtaagaccg       300
     gcgccaagat actttttaac ggtcaagtcg cggacgattc tcacgagtcc gtgatcacaa       360
     aatctaagaa gcgacgctca ggggtagatt ctgggtggtc tcgtgccgac gctgcacgtg       420
     cgctttcttg acgcactgca cgtgcgtttt cccataaatt ttaaggtcat aaaatttagg       480
     agaacacttt tccacactac agactccggt caacatcctt tcctccccca agatcttgac       540
     caatccgaga gcaaagaaaa atcctactac tagttaacga aacctattcc accaatccaa       600
     attggagtaa tcaggggcga ttagtataaa aaccgcggtt ccgcggccct caggtgattt       660
     ttctctgagt tttgggaagc tatagttgtc gggacctttg aaaaaggctt catccgattc       720
     tcgaagccct ttttctccag tagagtcagt gcaaaaccac tatcaactta agaccaacgg       780
     catgctgatc ggggaaattg acgaagcgga cctggcgccc agcatcccac agtcgacggc       840
     accctctccg acggtctctc gggcatcatt catcgttatc gccaagtagt aagttttgat       900
     ttcgctgcag tacactgggt ggtccctcct cttcttgtgt gtccctcttt aaagacgacc       960
     aaatttttag tgcgttcacg cagttcttcc gcccctcgtc accatcacct agcggggact      1020
     aacaatgcgc gccgactcac cgcccgtgtc cgctctaaca ccgcggaaaa ctctagagaa      1080
     caatctccgc taattcaggc atcggcccaa gaacagactc cggtcgttca gcctccagcc      1140
     tcgactctat caccgctatt agaaatttct tactcccctg tctccgatct gtccccagac      1200
     ttcttcgatg acctcttccc gtccagtcct ccccctgttt cacatccgat atcaccaccc      1260
     ccgattgagg aatttcccgt ctcgcatacc atcccctcaa ttcctcctgt tcaacctgac      1320
     gcttactctc ccgctagtca ccttcctctc ctctttcata acgcccatca gttgttggaa      1380
     tacatgtcct actttattcc ttccactaat gatagtcagc atcgcaggat ccacttgcct      1440
     attttcagtc cccataccat ccctcattcc catcgatcct ctttctctcc aaccatatga      1500
     gcttacacaa ctttaatttt cccctcctcc ttccaaactc tcccactcaa aataacgtcc      1560
     gtattacaca caactctctt tccacacaca cacacacaca cacacacaca cacacacaaa      1620
     atgcgtacga ccatatattt cagaatagag aaccaaagat tgtattttta tacttaagaa      1680
     aaatgtatta ctaaatattt cttttattat agtactatta aattaaactc tcgtttgtta      1740
     atttgaaaaa cctctccttg tatttattgt aagctctccc gcggttgcac ttcgccctct      1800
     ccccggatca cttggattaa gttccatgac cgaaagccag ggcatacgga cgtacctggc      1860
     gttaaagtgc gccctcccgg cacactgacc cagtttgggc cctttaaatt aaaagtacgt      1920
     ccgactcgtg tgtccgttta gcggagcacg agttgaggtt tccacttcgt cctccattcg      1980
     acccccggct cgttaggagc ctcaggacga agcgaagtgc ctcccgattt gcgtcggtcc      2040
     ttccccacgg ctcccttgcg gtccggagcc tggacacgac caaatcggtc taataattcg      2100
     gttcctgttg cgttcacccc ctcagctcca tgcatgcgga gcttggacgt aaca            2154
//
ID   Gypsy-10_AnFu-I repbase;    DNA;    INV; 5156 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5156
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2883-2883 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1108..1995
FT                 /product="Gypsy-10_AnFu-I_1p"
FT                 /translation="MTEESKKTSVVVSEETSRAPALGAGCNDTLRTPNPPP
FT                 AIEKISTKLPEFWEDAPDVWFAQAEAEFEVSKIVRERTKYSYLLGALPKQI
FT                 LVKVIDIIKTPDTELPYTTLKNHILNRVTQSEEARLTKLLYHVEIGDRKPS
FT                 DLFRHMVQLAGNSGMVGSALIQKLWKSRLPKAIETALIAVDTKEQEEQLRI
FT                 ADRLWECSQAGDVSAVKNRDTFENDTENSTAILRAEIRELREAIKRITTKE
FT                 RGRSPSRFHSNRTKSHSRPARSISRPRMCWYHFRFGKDAEKCTEPCTYNNV
FT                 NKKN"
FT   CDS           1989..5075
FT                 /product="Gypsy-10_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKLTNSRELADVPREHVNFSPRLFIEDETSKLTFLVD
FT                 TGADVSVIPHTLIGKALHKTEAMLTAANGSPIATYGTMLLRVSLGLRRVFT
FT                 HIFMVAAVNRPILGADFLFRNDILVDLKRRRLVDSSTQITTKGTIAQVDTP
FT                 TPKHFLHKQTDFTKVLEEFPSLLKPPDYNEPIRHSIQHYIETKGTLPFAKP
FT                 RRLDPKKFKTAQAEFQQMLELGICRVSSSPVSSPLHMVPKPDQDWRPCGDY
FT                 RRLNAITTPDRYPIPHVQDFTMNLNGCKFFSKLDIIRAYHLIPVAEEDIHK
FT                 TAITTPFGLFEFVRMPFGLRNAGQTFQRFMHNIFRNLDFVFIYIDDILIAS
FT                 PSKEVHMEHLRIVLNRLSENGVKIKSSKCCFGVSEIDFLSHRITTEGITPC
FT                 PSKVIAIRNFPTPNSVKQAQRIVGMVNYYHRFIRNVSGKLRPIHQLIAEHS
FT                 NKKKKKDFEWSDECETALQSIKSDLETATLLAHPNSDADLSVTTDASNYAV
FT                 GAVLEQAIDGKRVPLAFFSKTLTPTETRYSTFDRELLAIVLAIKHFKHFLE
FT                 GRVFTVFTDHKPLTSALTSKAEKSPRQSRQLDFISQYTADIRYITGDSNVI
FT                 ADALSRIGETEAIANHTYENFSREQKKDEQLVKLMNNIEKDKNTKFRLERL
FT                 TLHNTDLVFESSTGTNRLYVPSTLRRQTFESLHNLAHPGIRTSRKLVSDRF
FT                 FWPSMKKDVGNWTRCCQGCQKAKVVRHIKSPIEEFKPTKGRFEHIHMDLVG
FT                 PLPPSENMTYLLTIVDRFTRWPECYPINDITASTVARKFVDEYVSRFGCPA
FT                 VITTDRGRQFTSKLFDELTRILGVHHIKTTAYHPQSNGMVERFHRHLKEAL
FT                 KANENTTQWTKCLPLILLGIRVAFKEDLKGTPAEMVYGQSLRLPSEIFIPS
FT                 KDDTLTDRTEFIKDLKESFKSVQPKAPRHDKQSKFYIPKSIENCRQVYVRV
FT                 DKVRTGLTAPYEGPYDVIRRFRKYYVVKINEKNESISLDRLKPAFESEENP
FT                 SNAKPQVTGPECRSKKKTVRFRE"
XX
SQ   Sequence 5156 BP; 1682 A; 1135 C; 1110 G; 1228 T; 1 other;
     agtggtgacc ccgacgtgat actcatcgcc ccccgtatga acgagtgcgt tatcctatcc        60
     agtgcgtaag aggctggatt gatcgcgacg ttgtgtgtag tgcgtgagaa cagcagtgtg       120
     aaaccgtatt tgatcgcatg catcagaaga gcacaacata tacccgtatg cacaagcatt       180
     aaagcagggt agcgtaacgt cgaacgcaaa attccggcta agtgagcgtt caggggcaag       240
     tgtgtgaaag gtggtgtaac gtgagtgtaa tgtgaaagcc gtgggacaca aaattcgtct       300
     gaccattccg tgggacacaa aattcgtcgg accacgcgaa ccggctatcg aaaaatacgt       360
     cggacggacg ttaccacgtg gatcgaccat cgaaaaatac gtcggacgga cgttaccacg       420
     tggatcgacc atcgaaaaat acgtcggacg gacgttacca cgtggatcga ccatcgcaaa       480
     atacgtcgga cggacgttac cacgcggatc ggccatcgca aaatacgtcg gacggacgtt       540
     accacgcgaa tcagccctcg aaaaatacgt cggacggacg ttaccacgcg gatcggccat       600
     cgcaaaatac gtcggacgga cgttaccacg cggatcggcc atcgcaaaat acgtcggacg       660
     gacgttacca cgcggatcgg ccatcgcaaa atacgtcgga cggacgttac cacgcggatc       720
     ggccatcgaa aaatacgtcg gacggacgtt accacgtggm tcggccatcg caaaatacgt       780
     cggacggacg ttaccacgcg ggacggccat cgcaaaatac gtcggacgga cgttaccacg       840
     cgggatggcc attgcataaa aactgcagct aagcattttt gttaaaaagt tttttttttt       900
     ttttcatttc attagaatat ttttttatca ttaacacatt tttattatta ttataacatt       960
     acgattatct tttcaaatta ttttaatact ttcattagcg agggcaagca agatatatta      1020
     cttcatttta tattcatata attcatatcc attcctcaat tgatttatag aattgctctt      1080
     aagatacact gaatagggaa tctcgtcatg acagaagaaa gtaaaaaaac ttctgtggtc      1140
     gttagcgaag aaacatccag agccccagca ttaggcgctg gttgtaatga tacacttaga      1200
     acacctaacc ctccaccagc gattgaaaaa atttcaacaa agcttcccga attctgggag      1260
     gatgcgccgg acgtttggtt tgcccaggca gaagcggagt ttgaagtttc aaaaattgtt      1320
     cgagaaagaa caaaatattc atatttgtta ggtgctttgc ctaaacaaat actggtgaaa      1380
     gtgatcgaca ttatcaaaac gcccgatacg gaactgccat ataccactct taaaaatcac      1440
     atcctgaata gagtgacaca gagtgaagaa gcaagattaa ctaaattgct gtatcacgta      1500
     gaaattgggg atagaaaacc ttccgatttg tttcgccata tggtgcagtt agcaggaaat      1560
     tcagggatgg taggatcagc tctaattcag aaactatgga aatcaagatt gccaaaagca      1620
     attgaaacag cgctgatcgc agttgatacc aaagaacaag aagaacaact gaggatcgcg      1680
     gataggttgt gggaatgttc ccaggctgga gatgtgtctg cagtaaaaaa tagggataca      1740
     ttcgaaaacg atacagaaaa ttctacggct attcttagag ccgaaatccg tgaacttcgt      1800
     gaggcgataa aaagaataac aactaaagag cgaggtagaa gtccatcacg atttcatagt      1860
     aatcgaacta agtcacattc tagaccagct cgatctatct cacggccacg tatgtgttgg      1920
     tatcatttca gattcggaaa ggatgccgaa aagtgcacag aaccatgcac atataacaat      1980
     gtaaataaaa aaaactaacc aactcgcggg aactagcgga tgttccgcga gagcacgtta      2040
     acttctcgcc acgattgttc atcgaggacg aaacatcgaa gttaacattc ttagtagaca      2100
     caggagctga cgtgtcagtt attccgcaca ccttaatagg aaaagcgttg cataaaactg      2160
     aggcaatgct cacggcagcc aacggcagtc ccatcgcaac gtatggcaca atgctgctaa      2220
     gagtgagcct cggactacga cgtgttttca cccatatttt tatggtagca gcagtaaatc      2280
     gccctatact gggagctgat tttttgtttc gtaacgacat attggtagac cttaaacgtc      2340
     gccgtctagt agattcatct actcaaataa ctacgaaagg cacaattgca caggtcgata      2400
     cgccgacacc aaaacatttt ttacataaac agacagattt cactaaggta ttggaagaat      2460
     ttccatcctt acttaaacct cctgattaca acgaaccgat ccgccattcg atacaacatt      2520
     acatagaaac caaaggaacc cttccttttg cgaaaccacg gcgcctagac ccaaagaaat      2580
     ttaaaacagc acaggcagaa ttccaacaaa tgttggaact agggatatgc cgtgtgtcat      2640
     cgtcacctgt ttcatcacca ctgcacatgg taccaaaacc agatcaagac tggcgaccgt      2700
     gtggtgacta tcggcgactc aacgcaatta caactccgga tcgctatccg ataccacacg      2760
     ttcaggactt tacaatgaac ctgaatggct gcaaattttt ctcaaagctc gacattatta      2820
     gagcatacca cctgattccg gttgcagagg aggacatcca caaaactgct ataaccacac      2880
     cgttcgggtt gttcgaattt gttcggatgc ctttcgggct tagaaacgcg ggacagacgt      2940
     ttcaacgttt catgcacaat atcttcagga acttagactt cgtttttatt tatatagacg      3000
     atattctaat tgccagtcca tcaaaagaag tacatatgga acatcttcgg atagtattaa      3060
     atcgtctatc cgaaaacgga gtgaagataa aatctagtaa gtgctgtttc ggagtaagcg      3120
     agatagattt tctcagccac cgcataacaa ccgagggaat aactccatgt ccgagcaaag      3180
     taattgcaat tcgaaatttt cctactccga attcagtgaa acaagctcaa cgcatagttg      3240
     gaatggtgaa ctattaccat cggtttatta ggaatgtttc gggaaaactg cgtcctattc      3300
     accaactaat agctgagcac agcaacaaga agaaaaagaa ggatttcgaa tggtcagacg      3360
     aatgcgagac agcattgcaa tcaattaaaa gtgacttaga aaccgcaaca ttgttggccc      3420
     atcccaacag cgatgctgac ctatcggtca caacagatgc ttcaaattat gctgtgggag      3480
     cagtcttgga acaagcaatt gatggaaaaa gagtgccttt agcgtttttt tcaaaaacat      3540
     taacgccaac ggaaacaagg tactcgacat tcgatcgcga actgctcgcg attgttcttg      3600
     ccattaagca tttcaaacat ttcctggaag gaagagtatt cacggtattt acagaccata      3660
     aaccgttgac ttctgctcta acttcaaaag ctgaaaagtc accgcgccaa agccggcagc      3720
     tagattttat ttcccaatat actgccgata ttcggtacat tacgggagat agcaacgtaa      3780
     tagcagatgc gctttcgcgg ataggagaga cagaagcaat cgcaaaccat acatatgaaa      3840
     acttttcaag ggagcagaaa aaagatgagc aactagtgaa acttatgaat aacatagaga      3900
     aggacaagaa cacaaaattc aggttagaac gcctaacctt acataacaca gacttggtgt      3960
     ttgagtcgtc gactggcacg aaccgattgt acgttccatc aacccttagg agacaaactt      4020
     tcgaaagcct ccataacttg gcacatccgg gtatacgcac ttcacgcaag ctagtaagtg      4080
     atagattttt ctggccatcc atgaaaaaag acgtaggcaa ttggacgcgt tgttgtcaag      4140
     gatgccaaaa agctaaagta gttcgacata taaaatctcc aatcgaagaa ttcaaaccaa      4200
     cgaagggtag attcgaacat atacacatgg accttgtggg accattgccg ccatcagaaa      4260
     acatgacata cctgcttacg atagttgata ggttcacaag atggcctgag tgttacccaa      4320
     taaacgacat aacggcatct acagtagcca gaaaattcgt tgacgaatac gtgtcacgtt      4380
     ttgggtgccc agcagttatt accaccgaca gaggcaggca atttacatca aagttattcg      4440
     acgaattaac tcgtatattg ggagtacacc atataaaaac aaccgcatac caccctcaat      4500
     ctaatggaat ggtagaacgt ttccaccgac atctgaagga agcactaaag gcaaatgaaa      4560
     acaccacaca gtggacgaaa tgcttgcctt tgattctgtt agggattaga gtagctttca      4620
     aagaagacct taaaggtaca ccagccgaaa tggtttacgg ccaaagccta aggttacctt      4680
     cagaaatatt cattccttca aaagatgata ccttaacaga tcgcactgaa tttattaagg      4740
     atttgaaaga gagtttcaaa tcagtacaac ccaaggctcc acgacacgat aaacaatcaa      4800
     agttttacat tccaaagtcc atagaaaatt gcagacaggt ttatgttcgg gtagacaaag      4860
     tgagaacagg attaactgca ccatacgagg gaccatacga tgtgatacga cgatttcgaa      4920
     aatattacgt cgtgaaaatc aatgaaaaaa acgaatctat ttctcttgat cgccttaaac      4980
     cagcatttga atctgaagaa aacccaagca acgccaagcc gcaagtcacg ggtccggagt      5040
     gtcgttccaa aaaaaagaca gtacgcttca gagaataacc gcgtcgaaca gagaggtccg      5100
     cgtttcgcgt ttgactacct cattcaaatc gtgactgagt cactggggga gggtta          5156
//
ID   Gypsy-10_AnFu-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-257
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2823-2823 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 257 BP; 96 A; 52 C; 56 G; 53 T; 0 other;
     tgtagtgtac atagcgccat ctgtgtgtca acacagatct caaacgcaga taaaacgcag        60
     atcaaaaacg cagattaaaa acgcagttct aacgtagaac aaacgcacac ttatacattg       120
     atcaggtaca ggctagatag ggaaagatag gttagcagat cgggcgcgcc gatctgctga       180
     agcacttacg ttatacacct ggaacagtgc acaagtgata attaaataaa gtattgagta       240
     tcgacacgaa agcaaca                                                      257
//
ID   Gypsy-10_AnMe-I repbase;    DNA;    INV; 4643 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4643
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6822-6822 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..4631
FT                 /product="Gypsy-10_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLNPDEMMEDEEHRRLSQNWGNAGFSNGQQQQQQPLP
FT                 NSAALPAQPQSQNMAGAPSQQGASTSSPDAGLSQMIQLLQQQMSQQQQLMT
FT                 QILQYQQQPAAQLLQHPQQPQHPQPPQQSSTPTNPELILEALASNISEFRY
FT                 DAESGATFKAWFERYEDLFLRDASRLDDGAKVRLLGRKLGTVEHARYTSFI
FT                 LPRAPRDMSFDETVEKLTALFGRIESLLSKRYKCMQIAKSCKEDLLTFACR
FT                 VNRACVDFEFAGMNEEQFKCLILVCGLKEETDTDMRNRLLARIEEKNDVTL
FT                 EQLSAECQRITNIKVDSALIANDHGERVFAVKNGGQRSHQQQFYRQQYQPF
FT                 GQQTQTHPRGNTMYLQKPTNACWSCGGPHWKRECPYKSHVCTDCGRYGHRE
FT                 GYCERANRFQRQDNKRGSTQVATRVVNVNMCNVEARRKYVNVLINGTPVKL
FT                 QLDTASDITVISEGLWRDVGQPPLMAATVKAKTASQNYLQLKGEFDASITI
FT                 ASRTQQATIRVARANLFLLGADVVEAFELGSIPMDQFCSNIDAVSTPESVW
FT                 EKRFPTVFKGMGLCLKSRIKLEIKEGSHPVFRPKRPVAYAMLQTVDEELDR
FT                 LEALKVITPVDYSDWAAPIVVVRKANGKIRICGDYSTGLNDILRPHEYPLP
FT                 LPEDIFAKLARCQIFSKIDLSDAFLQVQIDEKFRPLLTINTHRGLYHYNRL
FT                 PPGIKIAPAAFQQLIDTMLAGITGVCGYMDDLIIGGMSDKDHDNTLNLVLK
FT                 RIEEFGFTLRPDKCVFKMCQIKYLGHVIDGRGIRPDPEKISAIQNLPAPTD
FT                 IAGVRSFLGAINYYGKFVPMMRDLRFPLDNLLKNEKQFKWTTECEAAFKKF
FT                 KEILSSELLLTHYDPTAEIIVSADASSVGIGATISHKFPDGSVKVIQHASR
FT                 ALTNAEFNYSQIDREGLALVYAVTKFHKMLYGRHFRLQTDHRPLLRIFGSK
FT                 KGIPVYTATRLQRFALTMQLYDFSIEYVQSGHFGNADILSRLIRHHVKPER
FT                 EYVIASLSLEEDVRSVAVNAIINSSPLCFRDVEQSTQSDSLLREVYRYIQE
FT                 GWPRETSYGSELARFHDRKEALSTVEGCILFGERLVIPADLRTQCLEQLHR
FT                 GHPGIQRMKSLARSYVYWPLMDNEIVEYVATCELCAAAAKSPPQAIPAPWP
FT                 KPSGPWQRLHVDYAGPIQDAYFLVVVDAFSKWPEIIKTSTTTTRATVAILR
FT                 GLFARFGMPLTIVSDNGPQFTSDAFKEFCESRGIQHITTPPFHPQSNGQAE
FT                 RFVDTLKRALRKIQTGDMSIDEALDTFLQSYRTTPNPALEGNETPGELMVK
FT                 FSVRTHLDLLRPPTIIERETNIVYGGFMPGDAVLTKVYGRNSWRWISAEVI
FT                 SKLGNVMYQLKGSDGRMLRRHQNQMRKRASKDIPQILQPGSESIQLPIDVI
FT                 LDEWKLPLVSDQLPLTDTSGGSCSDPLPQPLSPERSAPPETSTTMLRSPRR
FT                 SSRNRRPPRWFDAFVF"
XX
SQ   Sequence 4643 BP; 1347 A; 1048 C; 1147 G; 1101 T; 0 other;
     gtggcgacga gagtaaaaga aaagagagac tattttattc caaataagta tttatttctt        60
     ttatcgaacc cgacgaattt taatttgctt gctatttgtt aaaagtgtgt cgtttatgga       120
     actctaagtg ttttatattg tgtgtatcgc gctaataaga cgggacaatt tcgcgtaagc       180
     gtagaaggat gttaaacccg gacgaaatga tggaggatga agagcatcga cgtttatcgc       240
     aaaattgggg aaacgcgggt tttagcaacg ggcagcagca acagcaacag ccattgccaa       300
     acagtgcagc gttaccagct cagccacagt cgcagaacat ggccggagcg ccatcgcagc       360
     aaggtgcatc gacctcgagc ccggacgctg ggctttcgca gatgattcaa ctattgcagc       420
     agcaaatgag tcagcaacaa cagcttatga cgcaaatatt gcaatatcaa cagcaaccgg       480
     cagcacagtt gctacagcat ccacagcagc cacagcatcc acagcctccg caacaaagtt       540
     cgacaccgac aaaccccgag cttatcctcg aagctttagc aagcaatata agtgaattcc       600
     ggtatgatgc agagtcggga gcaacattta aggcatggtt tgagcggtat gaagatctgt       660
     ttctacggga cgcttcccga ctcgacgacg gtgcaaaagt aaggctccta ggacgtaagc       720
     tgggcaccgt agaacatgca cgttatacca gttttatttt accccgcgca ccccgtgaca       780
     tgtcattcga tgagacagtt gaaaaattaa cggcgctttt cggcagaata gagtctctac       840
     taagcaaacg ctacaagtgt atgcagatag ctaaatcgtg caaagaagat ctgctcacgt       900
     ttgcttgccg tgtgaatagg gcgtgtgtcg attttgagtt cgctgggatg aatgaggagc       960
     aatttaagtg ccttatcctg gtgtgcgggc ttaaggagga aaccgatacc gacatgcgca      1020
     atcggctgct tgcccgcatt gaggagaaga atgacgttac attggagcag ctatcggcgg      1080
     aatgccagcg tataactaat ataaaggtgg atagcgcgtt gatcgctaat gatcacggag      1140
     aacgagtgtt tgcggtgaaa aacggtggcc aaagatcgca tcaacagcag ttttatcggc      1200
     agcagtacca acctttcggt caacaaacac agacacatcc cagaggaaac accatgtatt      1260
     tacaaaagcc aacgaatgcg tgctggtcgt gcggtggtcc ccattggaag agagaatgtc      1320
     catataagtc acatgtatgc acggattgcg gaagatatgg acatcgggaa ggatattgtg      1380
     aaagagcaaa tcgatttcag cgacaggaca acaagagagg gagcacacaa gttgcaacgc      1440
     gagtcgtaaa cgtaaatatg tgcaacgtag aagcaaggcg gaaatatgtg aacgtgttga      1500
     taaatggaac acctgttaag ctgcagctcg atacggcgtc cgatatcaca gtgatcagcg      1560
     aggggctatg gagggatgtc ggacagcctc ctttgatggc agcaacagta aaagcgaaga      1620
     cagcctcgca aaattatctg caactaaagg gtgagtttga tgcatcaata accatcgctt      1680
     ctagaactca acaggcaaca atccgagtcg cacgggccaa ccttttcctg ctgggagcgg      1740
     acgtggtgga agcttttgag ctcggatcaa tcccgatgga ccagttctgt agtaacatcg      1800
     atgcggtgag tacacctgag tcagtatggg agaagcgttt tccgacagtt ttcaagggca      1860
     tggggctttg tttaaaatcg cgcataaaat tggaaataaa agagggcagt caccctgtat      1920
     ttcgtcctaa gcgccccgtg gcttatgcaa tgctacagac tgtcgatgaa gaactggacc      1980
     gtttggaagc cctgaaagtc attactcccg tggattactc ggattgggct gcccctatag      2040
     tggttgtacg gaaggcaaat ggaaaaatca ggatttgcgg tgattactcg acagggctga      2100
     atgacatcct acgaccacat gagtacccgc ttccactgcc agaggacatt tttgctaagt      2160
     tagcccgatg ccaaattttc agtaagattg atctctccga tgcttttctt caggtgcaga      2220
     ttgatgaaaa atttcgcccg ctgctaacaa taaataccca tcgtgggcta taccactaca      2280
     accgtctacc gcccggcata aaaatagccc cagcagcatt tcaacaactg attgatacca      2340
     tgttggcagg aataacagga gtttgcggct atatggatga tctcataatt ggaggtatgt      2400
     cagacaaaga ccatgataat acgctaaatc ttgtactaaa acgaattgag gaatttggtt      2460
     tcacattacg acctgacaaa tgtgtgttta aaatgtgtca gattaaatat cttgggcatg      2520
     taatcgatgg caggggaata cgtcctgacc ctgaaaagat tagcgctata cagaatttac      2580
     cagcccccac cgatattgcc ggagttagat ctttcctagg ggcaattaat tattatggaa      2640
     aatttgttcc aatgatgcgc gatctaagat tcccccttga taatcttcta aagaacgaaa      2700
     aacaatttaa atggacaaca gaatgcgaag cagctttcaa gaaatttaaa gaaatactgt      2760
     catcagagct gctattaaca cactacgatc ctacggcaga aataattgta tcagcagacg      2820
     cttcatccgt tggaatcgga gctactatta gccataaatt tccagatgga agcgttaagg      2880
     ttatacagca tgcttcacga gcgctgacca atgcggagtt taactacagt cagattgatc      2940
     gcgaaggctt ggccctcgtt tatgcagtta ccaagttcca taagatgcta tacggccgtc      3000
     atttcagact ccaaacagac caccgtcccc tgctccggat ttttggctcg aagaaaggca      3060
     ttcccgtcta tacagctacc agattgcagc gatttgccct gaccatgcag ctgtacgact      3120
     tttctattga gtacgtgcaa tcaggacatt tcgggaatgc agacatcctc tcgcggctta      3180
     taagacacca cgtgaaaccg gaacgcgaat acgtaatcgc cagccttagc ttggaggaag      3240
     atgtaaggtc agtagcagtg aatgcaataa ttaattcctc tcctctttgt tttagagacg      3300
     tagaacaaag tacgcaatcg gattctttgc tgcgagaggt ttatcgttat atacaagaag      3360
     gctggccgcg tgagactagc tacggctcgg aattagcgcg tttccatgac cgcaaagagg      3420
     cactatcgac ggttgaaggg tgcattttgt tcggggagag gctggttata cccgcagacc      3480
     tgcgaacaca gtgcttggaa cagctccacc gtggtcatcc aggaatccaa cggatgaaat      3540
     cgcttgcgcg aagttatgtg tactggccac tgatggacaa tgaaatagta gagtacgtag      3600
     ctacttgtga actgtgcgca gcggctgcca agtcaccacc tcaagcaata ccagcaccgt      3660
     ggccgaaacc ttccggccct tggcaacgac tacatgtgga ctacgctggg ccaattcagg      3720
     acgcctactt cctagtagtg gtggacgcgt tttccaagtg gccagaaatt ataaaaactt      3780
     ccacaactac tacacgagct acggttgcca tattacgagg attatttgca cgtttcggaa      3840
     tgccccttac aattgtgagt gacaatgggc cgcaattcac aagtgatgca tttaaggaat      3900
     tctgtgagag ccgcggcatt caacatataa ctacgccacc atttcatccg cagtccaacg      3960
     gacaggcaga gcggtttgta gacaccctaa agcgcgcatt aagaaagata caaacaggag      4020
     acatgtctat agatgaggcg ctggacactt ttctgcagtc ttatcgtacc acgcctaatc      4080
     cggcgcttga ggggaatgaa acgccagggg aattgatggt taagttttcc gtaagaaccc      4140
     acctcgatct tttgcgcccg ccaactataa ttgaaaggga aactaatatc gtttatggag      4200
     gatttatgcc aggtgacgct gttttaacaa aagtgtatgg gcggaattca tggagatgga      4260
     tatcggctga agtgataagt aagttgggga acgtcatgta tcaactaaaa gggtcagatg      4320
     gcagaatgct ccgaagacat caaaaccaaa tgcggaagcg agcatcgaag gacatccctc      4380
     agatactgca gccaggtagc gaatccattc aactacccat tgatgttata ctggatgaat      4440
     ggaaacttcc gttggtgagc gatcaattac cactaaccga tacgtcagga ggatcgtgct      4500
     cggaccctct ccctcaacca ctctccccgg agcggtcggc acccccggag accagtacta      4560
     ccatgttacg ttcacctcgt cggtcttcga ggaatagaag acccccgcga tggttcgacg      4620
     cgttcgtgtt ttaaaggggg aga                                              4643
//
ID   Gypsy-10_AnMe-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-263
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6847-6847 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 263 BP; 66 A; 61 C; 77 G; 59 T; 0 other;
     tgttatggcc caacctgcct aacacattag gccactcacc gacgacaggc aagggtcttc        60
     gtgtgatgtg tgagtgtagg aggtcgggtc tctcgggaga atgagagggc atcaagcggg       120
     aaccgagcgg cggtcgggca ctcggtacgg gcaggcagaa gggcaaagat attattagtg       180
     aatacacggt ttttacctac atcttaagct taaacccttc ccgcgttgtt ggccgttgtt       240
     aagtagcgca acatatcaca aca                                               263
//
ID   Gypsy-10_AnSt-I repbase;    DNA;    INV; 4706 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4706
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 784-784 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..4694
FT                 /product="Gypsy-10_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEPNHMDFTVEEDPRRLSNPRQAPPSVANNYNGAPIF
FT                 QPVNAAPDSNDNAALLHMMQLMQQQMAQQQELVMQLMRRNAPPSHNAEAPA
FT                 ESTQNFIARSVTEYVYEPDEHKTFAAWYARYEELFVKDAAHVDDAAKVRML
FT                 LRKLGTAEHERYSNFVLPQHPRDFSFKDTVSKLKTLFGPKETVLSKRYKCL
FT                 RIEKARTEDIMAYACRVNRACEDFELKALSENQLKALVFVCGLKSERDIEF
FT                 RTRLLNRIEKNSEITLEQLASECQMIINVHADSTMIADENKRVAALTKWPS
FT                 KRNMPPKEHGAPRFQNGSGPSGDKPKNPCWLCGTQHWVRECAYKTHKCRQC
FT                 GRIGHKDGFCRNRGYQQKNNYRRSAVKVVRVNACVVTSRRKYVTVSVNGKP
FT                 VRLQLDTASDITVIGQHTWQQLGKPPLRHPTVKALTASGSQFQLIGEFSAP
FT                 LVIRNVKRMATVRVAMVDVQLLGTDVIDLFELESVPMSVFCNNVVTTAARA
FT                 SSSVFERMYPEVFGESGLCTKAQVPLRLKEGVRPVFRPKRPVAYAMREIVE
FT                 KELDRLEANGVITPVNYADWAAPVVIVRKANGKIRICGDYSTGLNQALQPH
FT                 EYPLPIPEDIFTKLAHSKIFTTIDLTDAFTQVQVEEKFRPLLTINTHRGLY
FT                 QYNRLPPGIKIAPAVFQQLIDTMLAGMSKVCGYMDDLIIGGLTQEEHDANV
FT                 REVLSRIREYGFTIRADKCIFGMKQIRYLGHIIDGNGIRPDPKKIEAIVNM
FT                 SPPVNTSEVRSFVGAINYYSKFVPRMRDLRYPLDSLLKHGEQFRWTKQCAE
FT                 SFQKFKEILSSDLLLTHYDPKADIIVSADASSVGLGATISHKFRDGTVKVV
FT                 QHASRALTETEMNYSQIDREGLAIIFAVTKFHKMLYGRHFKLQTDHRPLLQ
FT                 IFGSKKGIPIYTANRLQRFALILQLYDFDIEYIRTDNFGNADLLSRLIRTR
FT                 SQPEEEYVVATIELEKDVRSVAVNSLSSLPLNFQDVVSHTQADSVLRSVYR
FT                 YIQRGWPQLSVLGQELARYYHRRESLSTVDGSILFGERLVIPRRLRERCLE
FT                 QFHRGHPGVQRMKALARSYVYWPSMDQEIAECVGACSACAAAAKSPPHENP
FT                 VPWVKSTLPWERVHIDYAGPIDGDYFLIVVDACTKWPEIIRTTSITTSTTV
FT                 AILRGLFARFGMPTTLVTDNGTQFTSEAFQEFCKANGVDHKRTAAFHPQSN
FT                 GQAERFVDTFKRALVKIKQGGTTLQEAIDIFLLTYRTTPNAQLEDRKTPAE
FT                 KMFGRVLRTSFELLRPPTKMPQQSAERARSFEPNDMVYAKVYRRNTWIWVP
FT                 AVVVKRCGSVMYLVKSDNQRVFRSHVNQLRRRVIARDRGLVDSDHRLPLDV
FT                 LLDSWSLSSSSSPSVSSSSSSSSPSVSSSSSSSSSSTSLSSSSSSPSSLSS
FT                 SSLSPSSSSTSPSSSASSSSSSPSSSSSSSSSSPSSSATWISANSSSSQTV
FT                 PLQTASKIPLQQQTISSPPPAECQRSGDHQEAEPVPPPRRSSRIRRVPRWF
FT                 NGYQLS"
XX
SQ   Sequence 4706 BP; 1361 A; 1077 C; 1165 G; 1103 T; 0 other;
     actggcgacg aggaaacgga acgtccaaac ccagcaacac gcatcaattc gagccaccat        60
     cgcatttcat cgaagcgaag cgacgccgcg tcccaagcag aatccgccat tgagaacgcc       120
     aaaccgaaat ggaaccgaac catatggatt tcaccgtaga agaagatccc aggcgtcttt       180
     ctaatccaag gcaagcaccg ccaagtgtag caaataatta caacggtgct cctatttttc       240
     agccagttaa tgccgccccc gactcgaacg acaacgctgc gctattacat atgatgcagc       300
     tgatgcagca acagatggcc cagcaacagg agctagtgat gcagctcatg aggcgaaatg       360
     caccaccgag ccacaatgcc gaagcaccgg cggaatcaac tcaaaacttc atagcaaggt       420
     cagtaacaga atatgtgtac gaaccagatg agcacaaaac gttcgccgct tggtatgcta       480
     gatacgagga gctttttgtt aaagatgcag cgcacgttga cgacgcagcg aaagtcagaa       540
     tgcttttgcg gaagttgggc acagcagagc atgagcggta ttcgaatttt gtgctcccgc       600
     agcatcctcg cgatttttct ttcaaagaca cagtgagtaa actaaagacg ctttttggcc       660
     caaaagagac ggttctgagc aagcgataca aatgtttaag gattgaaaaa gctcgtacgg       720
     aagatataat ggcttacgcg tgtcgagtga atcgtgcttg tgaagatttt gagctgaagg       780
     cgttgtcgga gaaccagcta aaagcattag ttttcgtgtg tggtcttaaa agtgagcgtg       840
     acattgaatt tcgtaccagg ctgctaaaca gaatcgagaa aaacagcgaa atcacattgg       900
     aacagttggc gtcggaatgc cagatgatta ttaacgtgca cgccgacagc acaatgatag       960
     cagatgagaa caaaagagta gcagcgttaa caaaatggcc gtcaaaacga aatatgccgc      1020
     cgaaagagca tggcgcacca cgctttcaaa atggctcagg tccatctggt gataagccca      1080
     aaaacccatg ctggctttgc ggtacgcagc attgggtacg cgagtgtgca tataaaactc      1140
     acaaatgcag gcaatgcggc agaataggac ataaggatgg tttttgccgt aacagagggt      1200
     accagcaaaa gaataattac agaagatcag ccgtaaaagt ggttcgagtg aatgcatgcg      1260
     ttgtgacaag tagaaggaaa tacgtcacag tttcagtgaa cggaaagcca gtgcgtttac      1320
     agttggatac agcatcagac atcaccgtca taggccagca tacgtggcag cagctaggaa      1380
     agccaccgct caggcatcca acagtgaaag cgcttacagc atcaggctca cagttccaac      1440
     tgataggaga attttctgca cctctcgtga tccggaacgt gaaacgaatg gcgactgttc      1500
     gtgtggcaat ggtggatgtg cagctgttgg ggacagatgt gattgatctt tttgagctag      1560
     agtctgttcc aatgagcgtt ttctgtaaca acgtagtcac aacagcagca agagcgtcgt      1620
     catcggtttt tgaaagaatg tatccggaag tttttggcga atcggggttg tgtacgaaag      1680
     cacaggtgcc gttacggtta aaggaaggag ttcggcccgt attccgcccg aagagaccag      1740
     tagcctatgc gatgagagag atagtagaaa aggaactgga taggctggaa gcaaatggag      1800
     taattacgcc ggttaactat gctgactggg cagcgcccgt tgtgatcgta agaaaagcaa      1860
     atggaaagat tcgaatatgc ggagattatt ctactggatt aaatcaggct ttgcaaccgc      1920
     atgaataccc actacccatc ccggaagata tttttaccaa gttggcacat agcaagattt      1980
     ttacaacgat tgacctcacg gatgctttta ctcaggtgca ggtagaagaa aagtttaggc      2040
     cattgcttac cataaacact catcgaggcc tttatcagta caatcgactc ccgcctggaa      2100
     ttaaaatagc acctgcagta ttccagcaac tgattgatac catgttagcg ggcatgagca      2160
     aagtatgtgg ctatatggat gatttaatca tcggtggtct gacacaagaa gagcacgacg      2220
     caaatgttag agaggtttta agtcgcatta gagagtacgg attcacgata cgagcagaca      2280
     aatgcatttt tggcatgaag cagatccggt atcttgggca cattattgat ggaaacggca      2340
     tacgcccaga cccaaagaag atcgaggcaa ttgttaacat gtcaccacct gtaaacacgt      2400
     cagaagtacg ttcatttgta ggagctatca actactacag caagtttgtg ccgagaatga      2460
     gagatctcag atacccattg gatagcctcc tcaagcacgg cgagcagttt cgttggacga      2520
     aacaatgtgc agaaagtttt caaaaattca aggagatact ctcatcagac cttttgctca      2580
     cccattatga cccgaaagca gacatcatcg tctcagctga tgcatcatca gtgggtttag      2640
     gagccacaat aagccacaaa ttccgcgacg gtacagtaaa agtggttcag cacgcatcaa      2700
     gagcgctcac cgagacagag atgaactaca gccagataga ccgcgaaggt cttgcaatca      2760
     ttttcgcggt aacaaaattt cataaaatgt tgtatggccg gcattttaag ttgcagactg      2820
     atcatcgacc actcttgcag atttttggat cgaaaaaggg tatacccatt tatactgcaa      2880
     acagattaca acgttttgcc cttattctgc aactttatga ttttgatatc gaatacatcc      2940
     gcaccgataa ttttggaaat gctgatctac tgtctaggct catcagaacg cgatctcagc      3000
     cggaagaaga atacgtcgta gcgaccattg agttggaaaa ggatgtacga tcggtcgctg      3060
     taaattcatt aagctcgctt ccgctaaact tccaggacgt cgtatcacac acccaagcag      3120
     acagcgtatt gcgtagtgtt tatcgctaca ttcaacgagg gtggccgcag ctttcagttc      3180
     tgggacagga gttggctcgt tactaccaca ggagagagtc gttgtcaacg gtagacggaa      3240
     gtattttgtt tggagaaaga ctagtcatac cgagaaggct gcgggagaga tgtttggagc      3300
     agttccatcg cgggcatcca ggtgtgcaac ggatgaaggc acttgcccgc agttacgtgt      3360
     attggccgtc catggatcag gagatagctg aatgcgttgg tgcctgttca gcatgcgcag      3420
     cagcagccaa gtcgccgcca catgagaacc cagtgccatg ggtcaagtca actttgccgt      3480
     gggagagagt acacatcgac tatgcgggtc ctatcgacgg ggactatttc ctaatagtag      3540
     tcgacgcttg tactaaatgg ccggagatca taagaacaac aagtatcacg acgtcgacaa      3600
     cggttgctat cctgcgtggt ctattcgcta gattcggaat gccgaccacc ttggtcacgg      3660
     ataacggaac tcaattcacc agcgaagcat tccaagagtt ctgcaaggcg aacggggtgg      3720
     atcacaaaag gacagctgct tttcatcctc agtcaaatgg gcaggctgag cgatttgtcg      3780
     acacatttaa aagagctctg gtgaaaataa agcagggagg aaccacattg caggaagcca      3840
     tagacatatt tctccttaca tacaggacga ctccaaacgc gcagctagaa gacaggaaaa      3900
     caccggcaga aaagatgttc ggaagagtcc tgcgaacaag cttcgaactg ctgcgccctc      3960
     cgacgaagat gcctcaacag tctgctgaac gcgcaagaag ttttgaaccg aacgacatgg      4020
     tgtacgcaaa ggtgtatagg cgtaatacgt ggatctgggt tccggcagtt gttgttaaaa      4080
     gatgtgggag tgtaatgtat ctagtcaaaa gcgataacca acgagttttt agaagccatg      4140
     ttaatcagtt gcgtcgaagg gttatcgctc gtgatcgtgg gttggtggac agcgatcatc      4200
     gcttaccatt ggatgtcctg ctggattcct ggagtttatc gtcatcgtca tcaccatctg      4260
     tgtcatcgtc ttcgtcatcg tcatcaccat ctgtgtcatc gtcttcgtca tcgtcatcat      4320
     cgtctacgtc attgtcatcg tcttcgtcat caccgtcatc attgtcatcg tcttcgttat      4380
     caccatcatc gtcttcgaca tcaccatcat cgtctgcgtc atcgtcttcg tcatcgccat      4440
     catcatcatc gtcttcgtct tcgtcatcac catcatcatc tgcgacttgg atatcggcta      4500
     actcatcgtc atcacaaaca gtgccgttac aaactgcgtc gaagattcca ttacaacagc      4560
     aaacgatatc ctcgccgcct cctgctgaat gtcaacgaag cggtgatcat caggaagcag      4620
     agccggtacc tccacctcgc cgctcttcga ggattagaag agttccgcga tggttcaacg      4680
     ggtatcagct atcttgaagg gggaga                                           4706
//
ID   Gypsy-10_AnSt-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-302
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 806-806 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 302 BP; 70 A; 66 C; 93 G; 73 T; 0 other;
     tgttgcgtac gcagatggat gtcgcacgac atggctctcc gggttgctcg cgtcgcgcga        60
     caacatgcgg aggtgtgcgt gtcaggtgcg taagagaggt caacgcgggt cacagcgaac       120
     agctgacgtg tcctgcgtcg ctcggggaca gtgtgtcgat agcgagcaac gggttaacag       180
     ccaaagtcgg gcaagcgggt tttaacgtgt aataaatgtt cgtttaagtt ttaaagtgta       240
     tttcatgttg tgtcgtatca gtgttcaagc cgtttatccg aaacgcaccc aaggacataa       300
     ca                                                                      302
//
ID   Gypsy-10_BrCo-I repbase;    DNA;    INV; 7279 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-7279
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1399-1399 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           662..2428
FT                 /product="Gypsy-10_BrCo-I_1p"
FT                 /translation="MDLTFQFPEKGRANKHVSALPDEMIKYELESQGIKPD
FT                 SNFMKRKKQLSDLLESREYKPGKYFVAIGYKEDIAACAHHLDSWRASYVEV
FT                 ELGDEILDLYRTRLRHMYGRISRITVPDDDEIAKNLLSTLKLYLSELKNAI
FT                 LQDLNYTSTSSPKSPDASAPKATDDKARNLDEWTMNEESLGEAESHREPFP
FT                 KPPRFVPSRSQYFEDSILDFSMKMQDDVPLNKTSIAAPKIASTFYAPRRSL
FT                 NFPHNPSTVSFPSQISYIPQRKVEMWKWDLKFVGDTHAMPVVEFIRRVDEI
FT                 AKARGATKEDLFKGAVDLFDGTALKWYRAGTKTNFFRDWDHLEEQLAIDFQ
FT                 DYEYGDTLWDTIKNRLQKNNETVVMYFAIMEDLFLKLNRPASELVKAVVIR
FT                 RNLRPEFIQGLGVKEYYDLRSLKHDCKIIEANLRRVHSRQSMHSVRNPELL
FT                 KNYRPSYGKMHSLDEAVLGRDSYYKEIPEEEFERSFYEMSLDDNRPRTDFS
FT                 NSRQDKFDSYVPNSNNFHPSSSSQLVPRTPISHEASNQRHVTFQGVDPRNL
FT                 NQSQQQYYPLRRNSLNPQSSGNEKGSSNYRTGQTPNPNRRPY"
FT   CDS           2341..5673
FT                 /product="Gypsy-10_BrCo-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="QPKPSVVGKREREFELQDGSNSQSQSPSILAVTQLLD
FT                 NLKEEARSESRFPPAFVRVKGEKRPYANLSILQQTFPALLDSGATRTVCGG
FT                 PGYKRLISLGFRHKKVTEFHQPVIHTADHSAHPIKHVFSIPIHFDRMFAIV
FT                 EILGAPSLPDDLVLGIPFMDSFKMGIFTPHSVWRPEPITSFEEDISRKCTE
FT                 SFSQLSIDAEEYEVEEAPECQRELSEVQLSKLQPIVDQFKRLGEVLLGRTN
FT                 VIAHDIDTGNNPPCFTRTRPTSPAKEKKIEQEFLRFKSLGVVEPAQTAFRN
FT                 AMTMVERYKSGKLKLRLCLDSRKLNAITKIEKYDLPRITTILSRLGKARFI
FT                 SKIDLKDAYLQIPLTERSKEKTAFFVKGHGVWQFITMPFGLVNCSATMQRL
FT                 MDTLFGDLDGMVFVYLDDLIVVSEDFDEHLQLLSTVAQRLKQANLSINYEK
FT                 SGFCLRNMRYMGYIVDELGLRPDPEKISCVLKVPLPKTVTELRRFLGMAGW
FT                 YRRFIHAYAEVAAPLQDLLQGGGKGRKLVWNEKATQSFEQLKQKLVSAPLL
FT                 QPPDFSKEFIISCDSSDGCIGGVLSQYADSDNKYDRPVAYASRKLRGPEIH
FT                 YTTTEKECLAVVFCLEKFLEFVEGTEITVYTDHSALTWLFKQKELSGRLAR
FT                 WVLTLQQHNMKIKHLRGKNNVVADAISRFPIVQILEVVALLEFVQPTGDLW
FT                 YENLLNDVRQGNARSRRYKEVNGRLLYDPSIKGRRLTNWKWKLVIPSNSRS
FT                 AILDECHDDPKAAHLGVQKTIDRVLDRYYWPGLSKDVKEYVKNCEVCRMSK
FT                 YDNIKPPGLMGKFRNAHTPWQLISMDLLGPFPRSRRGNTCLLVFCDWLTKY
FT                 PCIVPLRTAVAKNIVKHTESRVFLEYGIPQAIIMDNGSQFARSKVVMALLK
FT                 KYGITRLWSNCIYHPQSNFTERHNKNINAALRAYVKENHKSWDELLPEISL
FT                 ALRTAVHSVTKYSPFFLNHAREYVFHASDYSLFSHDSPSENPIEERTMFLE
FT                 KFKEISGDILKRMKSSYDRNKRYYDKSRSQASFKIGDPVYYRNFVQSDAGK
FT                 SFMKKLAPIYLPGTISNVISNLAYIVSNATGKEIGKFHIQDLRPRPIPPNP
FT                 KNQ"
XX
SQ   Sequence 7279 BP; 2173 A; 1505 C; 1491 G; 2109 T; 1 other;
     atcaaccggg atattcgtag gaataaacaa atttaaccat tcgttctgca tgttcgctcc        60
     tacctagacc aattgagcag aatttttttt ttttttcttt tgcgacaagt aaacgttttt       120
     gagtcctgag tgaagggaga gcaaaagaaa gaaagaaatt gaggctaacc gccagcatga       180
     ccaaggaaag gtcagaagat tttgtctgat ctgccagtga ggcgtttttc ccgagtgaat       240
     ccaagctcaa gtcgagaatt ctgcggtcaa tccgattaat tttcctattt accttaacta       300
     tctataacaa acgacaacat attcactttt ttgatcgtgg cgtcccaagt agtgggacaa       360
     tatttttctt tccaattata tgcctcgatc gatggcgaaa taacctcgct acgacgggat       420
     tttcgcgtta tctccgcaca acagtcgggc ttagacgtca tttcattaga gtttttagga       480
     ctccaattcg cctgtgccca ttatgaacac atgctaagac aaaacgagtg ggttatccgc       540
     ttaccaccgt actgtactca agtggtgtat cgccaattag gatctttgga gaacataatc       600
     caggcctggg acagatttta atttttttta tttgccgctt tgataatcga cgtttccagt       660
     catggattta acttttcaat tccccgaaaa aggaagagcc aacaagcatg tgtctgcatt       720
     gcccgatgag atgattaagt acgaattaga atcacaaggt attaaaccgg acagcaattt       780
     tatgaaacga aagaaacagc ttagtgacct attagaaagt agagagtata agcctggaaa       840
     atatttcgta gccataggat ataaggaaga tatcgccgct tgtgctcacc atttagactc       900
     atggcgggcc tcgtatgttg aggtagagtt gggagacgaa atcttggatt tgtatcgaac       960
     tagattacga catatgtatg gtcgaatttc gcgtatcacc gtcccagacg acgatgaaat      1020
     tgctaagaac ttgcttagca cactcaaact ttacctctcg gagttaaaaa atgcgatttt      1080
     acaagacttg aactacacgt ccacttctag tcctaagtcc ccagacgctt cagcccctaa      1140
     agccaccgat gataaagcta ggaatctgga tgaatggact atgaacgaag agtcgctcgg      1200
     agaagcggaa tcgcaccgag agccatttcc aaaacctcct aggttcgttc cttctagatc      1260
     ccagtacttt gaggactcga ttctggattt ttcaatgaaa atgcaagacg acgtaccatt      1320
     gaataagaca agtattgcag ccccgaaaat agcttcaacg ttttacgctc ctcgtcgttc      1380
     gttgaatttt cctcataatc ccagcacagt gtcttttccc agtcaaattt catatattcc      1440
     ccaacgcaaa gtagaaatgt ggaaatggga tttgaagttt gtaggagata cccatgcgat      1500
     gcctgtcgtt gaattcattc gaagagtcga cgagatagcc aaagccagag gagctactaa      1560
     agaagatttg ttcaaaggtg ccgtagattt atttgacggt accgctctga agtggtatag      1620
     agcgggaacg aagaccaatt tttttagaga ttgggaccat ttagaagaac aattagcaat      1680
     cgattttcaa gattatgaat acggtgacac cttgtgggat actatcaaga ataggctgca      1740
     aaagaataac gaaaccgttg tcatgtactt cgccataatg gaagatcttt ttctcaaatt      1800
     gaatcggcca gctagtgaac tggtgaaagc tgtagtaatt cgcaggaatc ttcgtccaga      1860
     attcattcaa ggattaggcg ttaaagaata ctacgattta cgttctctga agcatgactg      1920
     taaaataata gaagctaatc taaggagagt tcactctcgt caaagcatgc attctgtccg      1980
     taatccggaa ttattgaaaa actatcggcc atcttacggt aaaatgcact ctttagatga      2040
     ggccgttttg ggccgagact cttattataa agaaattcca gaagaagaat ttgaaagaag      2100
     tttttatgag atgtccttag acgataatcg gcctcgaacc gacttttcga actcacgtca      2160
     agataaattc gactcgtatg ttcctaattc gaataatttc caccctagtt cttcgagcca      2220
     gttggttcca cgcactccaa tctcacatga agcttccaac caacgtcacg tcacatttca      2280
     gggtgttgat cctcgaaacc tgaaccagag ccaacagcaa tactatcctt tacgacgtaa      2340
     cagcctaaac cctcagtcgt cgggaaacga gaaagggagt tcgaactaca ggacgggtca      2400
     aactcccaat cccaatcgcc gtccatatta gccgtaactc aattgcttga taatttaaag      2460
     gaagaggcta gatctgaatc gcgttttccc ccggctttcg taagagtcaa aggtgaaaaa      2520
     cgtccttacg ccaatctttc cattttacaa caaactttcc ctgcacttct agattccggt      2580
     gctacccgta ccgtgtgtgg tggtcccgga tataaacgat tgattagttt aggctttaga      2640
     cataagaaag taaccgaatt tcaccagccc gtgatacaca cagctgatca ttccgctcat      2700
     ccaatcaagc acgtcttttc cattcccatc cattttgacc gaatgtttgc gatcgttgag      2760
     atactcggcg ccccatcgct gcccgacgac cttgtactcg gcattccttt catggactca      2820
     ttcaagatgg gaatattcac gcctcattcc gtctggaggc ctgaacccat tactagcttt      2880
     gaagaagaca tatctcgcaa atgtactgaa agctttagtc aacttagtat tgatgccgag      2940
     gaatacgaag ttgaggaagc tcctgagtgt caaagagaat taagcgaagt acaattatct      3000
     aagttacaac cgattgtcga ccagttcaaa agattaggag aggttctatt aggccgtact      3060
     aatgtaattg ctcacgatat tgacaccgga aataatccgc cctgttttac tcgaaccaga      3120
     cctacctctc ccgctaaaga aaaaaaaata gagcaagaat ttctaagatt caagtcgcta      3180
     ggcgtggtgg aacccgcaca aactgccttc aggaacgcta tgaccatggt tgagagatac      3240
     aagtcaggta aattgaagtt gagactttgc ctagattctc gaaaattgaa cgccattacc      3300
     aagattgaga aatacgatct acctcgtatc accactattt tatctcgatt aggaaaggct      3360
     cgctttatct caaaaattga tctgaaggac gcttacttgc aaataccatt aaccgaacgt      3420
     tcaaaagaga aaactgcttt ctttgtcaaa ggacatggag tgtggcaatt tatcactatg      3480
     cctttcggtc tagtaaattg ttcggccact atgcaacgcc ttatggatac tctattcgga      3540
     gatctagacg gtatggtgtt cgtatatctc gacgacttga tcgtcgtaag cgaggatttc      3600
     gacgaacatt tacaactgtt aagtaccgta gcccaacgat tgaaacaggc taatttgtct      3660
     atcaattatg agaagagtgg attctgttta agaaacatga gatatatggg ctatatagtc      3720
     gatgagctag gccttagacc cgacccagaa aagatttctt gtgtactgaa ggtcccactt      3780
     cctaaaaccg tgacggaatt gcgacgattc ctcggtatgg ccggctggta tcgtcgtttc      3840
     attcacgctt atgcggaagt ggctgctcct ttacaagatc ttcttcaagg cggtggtaaa      3900
     ggtagaaagt tggtatggaa cgaaaaagct acccagagtt tcgaacagtt aaagcagaaa      3960
     ttagtttccg ccccgttgtt acaaccaccc gatttctcta aagaatttat catttcttgc      4020
     gactcaagcg atggttgtat cggaggagtt ctcagccagt acgctgactc ggacaataaa      4080
     tacgatcgtc cagtggccta tgctagtcgc aagcttaggg gcccggagat tcactacact      4140
     actacagaga aagaatgttt ggccgtggtc ttctgtttgg aaaagtttct agaatttgtg      4200
     gagggaacag agatcaccgt ttacactgat cattccgcct tgacgtggct gtttaaacag      4260
     aaagagttgt caggtcgttt agctagatgg gtactaactc tccaacagca taatatgaag      4320
     atcaaacatc tcagaggtaa aaacaacgtt gtggcggacg ccatatctcg attccctata      4380
     gtacaaatcc tggaagtcgt tgctctgctc gaattcgttc aacctactgg agacctctgg      4440
     tatgaaaatt tattgaacga cgtcagacaa ggaaacgctc ggtctagaag gtataaagag      4500
     gtaaacggaa ggttattata cgatccttcg attaaaggta gaagattgac taactggaag      4560
     tggaaactgg ttataccttc gaatagccgg tcggctatac tagacgaatg tcacgacgat      4620
     ccgaaggccg cgcatttagg tgtccaaaag accatagatc gagtgcttga ccgttattat      4680
     tggccgggtt tatccaaaga tgtgaaagag tatgtcaaaa attgtgaagt ctgtaggatg      4740
     tccaaatatg ataacattaa accccctggt ctaatgggta aattccgaaa cgctcatact      4800
     ccttggcaac tgatctccat ggatttactg ggtccatttc ctcggtctag acgtggtaac      4860
     acatgtttgt tggtattttg cgactggtta acgaagtatc cctgcatcgt tcctttgaga      4920
     accgcagtag ctaagaatat cgtcaaacat accgaatctc gcgtcttcct agaatacggg      4980
     ataccccagg ctatcatcat ggataatggt tcccaatttg ctcgtagtaa agtagttatg      5040
     gccctcttaa agaaatatgg cataacacga ttgtggagta actgtatcta tcatccgcaa      5100
     agcaacttta cagaacgtca taataagaac attaatgcgg ccctccgggc atacgtaaaa      5160
     gaaaatcata aaagttggga tgagctgcta cccgagatat cattagcttt acgcaccgca      5220
     gttcattcgg tcactaaata ttcgcctttc ttcttgaatc atgcccgtga atacgtattt      5280
     catgcatctg attattctct cttctctcat gattccccga gtgagaatcc aatagaggaa      5340
     cgtactatgt tcttagaaaa gtttaaagaa atttcgggag atatattgaa acgaatgaag      5400
     tcttcatatg acaggaacaa acgatattat gataagtccc gttcgcaggc ttctttcaag      5460
     attggagatc cagtctatta ccgtaatttc gtccaatcgg acgctggaaa atccttcatg      5520
     aaaaagttgg cccccattta tttacccggt actatctcca acgttatctc taatctggct      5580
     tacatcgtct ccaatgcgac gggtaaggag atcggcaaat ttcatatcca ggatttacgt      5640
     cctaggccga tcccgccgaa tcctaagaat caataatcat tttattcgcc tctattatca      5700
     atcacatccc gttttactct atctctttat gccgcgagat gtgattgatt tatttgactt      5760
     ccccggagtc aaataacaga cgaacagggt gaatttgtta ccaccctaac gattagctat      5820
     gcaggtttct ttcatggcgg gaatccgact ttagggaata ataaaccgct caaaccgcga      5880
     taatccccaa tgccattagt ttaagataga tataagcatt tttttagttt ttctgttatt      5940
     aacgtattta gttaggataa gaatttaatt cacttgatta agttagtatt caataggata      6000
     attttcgcat tttctttaac atttgtcatg ttaacgacgt taacaacgaa atttagcttt      6060
     ccacaataca tttcatcgtt ccttccattt ttttttattg ccttatgctt ctgaatgcgt      6120
     tgtaccatac gtctgagacg gtgattatgt aacttttaag gtgccgctta tagaaggttc      6180
     gaatcatgaa gggtcaaaat ttagattttt tgtcttgatt tcctgtgtag cataacgatg      6240
     aaccgaaaat tattctcacc aggttcgccc taatggtccg tagatgtgga tgacgttcat      6300
     tagctatgcg taaggttaat tgatccgaaa tgaataattg gtaaatagcc tcgtcatgtg      6360
     agcattgtgc atagcctagt cgatgtcatt ttctgcaaaa gctcatgggt agctgagctt      6420
     agcataaaat gatcgatcaa atcggcgatc tatgaacaat gagagtctat gactaggaag      6480
     acagaatcga aattcgatat catgattaat atggtttcat cgcatctcaa agatgccata      6540
     gaagtcttgt aattggtgat gttgagtaga cgttcgtcac ttgttcgaaa gtagcgcacg      6600
     caggagtcat gattcagcaa mgcaatttaa aacagtccga accgcacgaa accaacggaa      6660
     tcctattcag ttagaatttc tattaatttt attttatttt attttttttt ttcttccacg      6720
     caatgttttt agttgagaat tgctacggcg taaaaaaaat atatatatat atagagtgcc      6780
     aatgatccga acaggtataa cctgatatat ccgtctattt tgccttcagt cttatccgca      6840
     ttaatttaat ccgagatata catttgacta tttgacggag atttttttct aatatggcaa      6900
     agagtcagaa ttcaactaga tccatgtcga caagaataat tgatccgtat ttcactcgac      6960
     atgagtctaa gagaagaatt gtgaaaagcg ttacacttca aattatcgcc cagaaggtgt      7020
     accctgttat gttgtaacat cgaggtcacg atatttgaaa tgacgtatgg acgtcattag      7080
     tatgaaagtt ttcaactagg aattctatga cgtggaattg gcacgaacat ttataccagc      7140
     aatagcccaa agttaacttt aacatgaaca tattccataa ttttctatga ggtataaaga      7200
     gtccaacagt agtaaaaatc gcatagcgat aggaattccg aatttattat ccgaatttcc      7260
     tagctcaggt ctaggggat                                                   7279
//
ID   Gypsy-10_BrCo-LTR repbase;    DNA;    INV; 1379 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-1379
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1412-1412 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1379 BP; 438 A; 232 C; 265 G; 444 T; 0 other;
     tataatgtga cgacattact tcgtcgcatt ctaagattct cttttctctt ccccttcgat        60
     tgaatgtaat taatttatcg tacgggatta gcgatcgtaa attaggagaa atagcactgc       120
     actagtggca gttcgttagt aaataagttt agtcctaagt gaacgtttat aacgatttca       180
     aggagtttta gtgcgtgaag agaacgcttt ctccttaaga aaaaatgaaa gaaaatacga       240
     atacaaatat aaaagaaaga aaataaaata aataaatttt agcgaccata cgtaagacca       300
     tagatcgtaa gaggaatatt gtaacaaaaa tctagtttaa atattggcgc gtgaggtgtt       360
     taattaattg ggacacaccg attgttgatt tcatgaccga cgtttcataa ttgttaacgt       420
     taagggatca ataatcgcag ttccggtttt tggagacgaa tgggctcgaa cgtatgatcg       480
     tcctaatcgg tttcaaaatc agtcttaagc tatccgttcg aaaggacaga cgtgttgctt       540
     tacaattaat tctagttaga ctaagcgata ttgcataacg aaagtaaatc gtcggccatc       600
     ggctttttaa cgtatagaaa gtgcaaaaga aaaagtgtct ttgtaatcca gtagtgatcg       660
     atactcttca agactaatta tttcggacaa ttctaatgta cggacgaatt tatttttgat       720
     gaagaagtgt gatgaaaaag gactgtgacg ccatcatttt tttttatttc gttctttggc       780
     gaaagtgatt aaatccgaga gcatttccat atgaaagtgt tttccctgaa ttcaattccc       840
     ataaagacaa ctgtgagttc ctgattaatt tgagttaacc gcgtggaccc gattatctgc       900
     ctgcccctgc ccacacgtgg ttgcccgttg gctacatcaa ttccacatct caaaggtacc       960
     caacgttatc tattatttat ttaatgcgca ttaaatcatt gaagtgaaaa gtgaaacatt      1020
     cggccgcaat agttttaaga atgcaaattt aggttaaggt tgccaattat agtttaagga      1080
     atgcaaattt agattaaggt tgccaagtag gttaagagag ctagctttag tttcaagtcg      1140
     attaattagt tcattgaaat ttagataaaa taaaaaaaag ttatttcggt cgctaatacc      1200
     tggtttgtga cattcattcg accttgtcct ttccctataa cgaccctttt tgccgaatga      1260
     cctttttttc cctaagatct attaaggatc gttcttgcgc cgcaagaagt ttcttttgat      1320
     cggctggaaa atttcaaagg ctaacgcctc agttaaggtg ttatatagac aactttaca       1379
//
ID   Gypsy-10_BTa-I repbase;    DNA;    INV; 9720 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-9720
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 674-674 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           6601..8028
FT                 /product="Gypsy-10_BTa-I_2p"
FT                 /translation="MEAVLDLVPQERKPRSLCDGFGRLVSSLTGLMDDEDR
FT                 TTVQGSLGDLQGRVDELEAEITPHKAIIQGMLNGTMQNAKILNALTREMVT
FT                 NGNAIGDLRSAVDLEAKLREISFWVAKLRFERSQLRLGLEGALEGTLRGEL
FT                 FPPQYLFNVLRRIEVGLAEQYRLVTEVTAKKLKVFYDLGKVSLSKIREELV
FT                 ITIDFPLRRVGMEFVLWKLIAIPVFHPALQSFVQLDVKDYLIMSSDFKWFA
FT                 ALSSQTVDECKKSVNITVCPAKVPLSMETVNACEFELFSSKKSSNCEKRIL
FT                 SNKPDGYFLRLGNKWVFSVINSTKLSINCGQRHEFRVVTGAGVLRGLQHCD
FT                 IGTTKQLMFGGVELTSEMVGEWEDSVIPTIDGVAGLTVNEEQALEEEKERG
FT                 DLAENVRQFAAQSADRAMLSALLSTLSERRRSRPWVSPQIHLYGLSTLVLF
FT                 LALLGVLVGWRLLQASVASIASPIQARRSNA"
XX
SQ   Sequence 9720 BP; 3138 A; 1616 C; 2304 G; 2662 T; 0 other;
     tgttgtaggc gccgtgtcat cttgtgatat cgtagggatc ccggtacccc ttcgtttttg        60
     ttgttcttct tagttatttc caaagttttc caaagtctcc cgcgttttca agttccaaag       120
     tttttcattt tttcaaaatc acgcagtttt tataattatt tcgaaatttc tctcatcgca       180
     tccttcaaaa aatgaaaagg taagcaagtt ttgttttaaa tgttttactt aacaaattat       240
     ttcaattatc acatgtgttc atacttctcc ttttcggccg aggactaatg ttcgtcaaat       300
     ttaagtcgtc acagaacaag gtttttgaag tgaaagcaga cagagttttg caggcactaa       360
     gattggcgtg cccgagttca ttccccaaag gaaaaaaatt tgcggagcgg gagatcttag       420
     agtatgcaaa aatcctgtct cagagagata tagacgattt ggaaatatat tctgaaactc       480
     ctacagagtg ggagtacgcc aaaaacggaa aaataaaaaa tatttccaaa ggcaatcaac       540
     tagcagtatc aagggagtta gagaaaagag gagtcaaata tacctatgct acactagatg       600
     acgcaagaaa atacttgagc aaactagagg gcgaacgaat ttcacagttg gaaaagaaat       660
     cgaaagaaaa ggaggagcca tacctacgtc ccattttatt atcagtaaat gagaccgact       720
     ttgcacctgg tgcgggcacg tccagcacac caagtggtga cagatctgag tgtccgttaa       780
     aagggtggca aaactttacg catgaacaag agaaattaat acacttagaa gattctgtta       840
     tccagggagt acatagtgca agctctctgt cagggacgct gacgcaaggg gatttagata       900
     aatttttcgg gaaaaataat agtattcatt tatacgagaa cgtgtacgaa gacataaaaa       960
     tgacacacga gggcaggaat taagttgcaa tcccctccat ccaaaagaaa cgattggacg      1020
     accctccaaa aaaattcacg ggcaacgatg atcagagcat ttatacattt ttagaagact      1080
     atgagcgata tatgattggt tttcctgacg atagaaaaaa attacatcta agggcatttt      1140
     tagacgagag agcaaagatt tatttcgata atgaaaggga aacttttgag gcacttgaga      1200
     catttgagga atataaagag gaattaaaaa aggaattcgg tgcggaagac cgggattggg      1260
     gagctttcat tgatagggtt caaagagaaa atgaaaatcc actaaactac ttcgaagcaa      1320
     agcggacatt ggcgagaact ttagatgttt attcttcaca aaaagcgaca aataaactca      1380
     taataaaagg actgaaaagt aattataaaa atgcggtgct aatgcaagac aattctacgt      1440
     accaacagct tagggaacat ttaaaaaagg ccattgagtt aattgaggga gataggaaat      1500
     ggagaaataa agaaggatat aatgagaaaa aaggagtgag atttgacgga gcggttgcag      1560
     cggtacaaaa cgaaggtaac cacagcggga atacatcaaa gttggaaaat agagtgagag      1620
     atttagaagg gaatctagca atgttatcgt ctaaagtgga tttaggattt gcacagacag      1680
     aacgactgga gattaaaatg gagaaactgc aacgatcaat aaatgaggtc gcgagtagtt      1740
     tccaaaattt cgctcaaaat gtaagttctt cgcaatttcc tcctcaaggg tcttatcagt      1800
     ttccaactag ctacagacca agaccgagat gtgatcattg tgggaaaaat ggccacgatc      1860
     atgactcctg ctggattttg catcctcaac tccgtccaat gagaagaaat gaatttaata      1920
     catcaagtaa taaccaaaaa aactagaggg gccccgggcc cggagacttt ctaggccggg      1980
     aagagtcgag tcttaacaga attgaaatga tagaatcaaa gacgaaaaaa aggcgtaatg      2040
     tggtgagcaa agaaaagatt tcaatgttcg tggactatac gggaataggc ttaaaaggag      2100
     acctaggtga agttttaggt cgcgaaaaat tcgttattga ttgtaaatgg gatagtggtt      2160
     ttgaatttca ggatttggtg gaaaacattc gtgaggaaga acaacatgat ggtctaggta      2220
     acgtgattat aattatggga ggaagcaata acgtaaaaga tgcctatcat gaattaccca      2280
     agaatatcga tttatcataa ttagaagagt tagcaaataa aaaattggta attgtaactg      2340
     gagttccaca acaagagcga gaaaatgagg cagatattaa gtttgtaaat aaatattttg      2400
     aaagtgcggt gttaaattgt aagaaaattc ggtttctgcc attagatgca ataggtcctc      2460
     aggaatggat tccaggaaaa tctccgaaag gtaaaagact atctgattct ggcgggtaca      2520
     agttggcaaa catgcttaaa ggaattattg ataaatacta tggtgatgta gtaggttgcg      2580
     ttgtagagga tgataagtta cattctatta ataaaataga ccaacgagaa gttaaaaatg      2640
     acaatagatt atcggtggta gggtattgca atggtcacga agcaactctg caattcgata      2700
     cttgggcgga cgtctgtgtt gcaacggcaa atttcgtgag ttctaaggaa atagatgtga      2760
     aagatagaaa aagtttaaaa aatggagacg gttcgcccct ggaagttttg ggagcggcgg      2820
     aagtaaattt gcaactaaaa gatgggacaa agtttcacga aaaaatgcaa ataattgcga      2880
     gcaatagaca aaaggtttta ttgagtctgt catttatgag gtttcatggg ttaaaaaatt      2940
     tactccccgc tgatgtttta aataaattga taataggaga gaagaattat caggaggaac      3000
     cagtaccaga ttattcacgg tggccaggtg acaagcgcga cttgttcaag gaacaattga      3060
     tcgaggaagg ttacgaggcg gaggtaaatc taattgaaag gttgggaaaa gagtcatatg      3120
     aggaagaatt ttcaattttg cagtttccag cggcaagaaa gagcaatgtc actgtctggg      3180
     accatgacga agcatcagcg gcgttcgcga gaacatatca gtgttttgcc gttcacgacg      3240
     agtgtaacag tgaccttgct gacctagaga gagaaaaaat aagtgaaaac aaaactgccg      3300
     ctgacgtgca agagaacgcg aagagaatag ccgaactagg tgtaaatatt aatccggtac      3360
     tgcccgagat gagtaagcga gaattagagg ccgtaatact cgagtttcaa gatatgtttc      3420
     tagaagacga aagtgacttt agagccggcc aagtccgcat ggaaccaacg gaatatactt      3480
     ttgtgaattc tgacccggtt tatgtaccta tgcggcgttt tcatagtgag gataggaaat      3540
     ttatagccca agaaacagac aaaatgaaaa aatggggagt aattagagat tcaagatcgg      3600
     catattccag tccagtggta atagcaaaaa aaaaaggaaa gcctaggtta tgcaacgatt      3660
     tttccatgtt aaatgagaga attaagacag aacgttatcc actaccacga atcgcagaca      3720
     ttttaaacat agtgcgagcg aagaaatggt ttgttaaatt agattttttc cgtgcatttt      3780
     ggcaaatggg tttaaaagaa ggacagtccc gggaggctac cactttctcc accccagatg      3840
     gccactatga atactcagtt ttaggattcg gaattaaagt tcatcccgga atttttcaga      3900
     gaaacgttga taagacatta gctgaactga ggtttaaaat ggtcattgct tatatcgacg      3960
     atttggttct ttacgcagaa acattggaag agttgataga aaatttaaaa atagtgttga      4020
     cacgcctaag agaagcggga tatattttaa gtccaataaa aagctacttt gggtacgagg      4080
     aaatttccat ttttggattt gaaaagggcc cttacagatt aaaaaatgaa aagaagcgaa      4140
     ttgaggctat tattacatta ccaccgataa aaacaaaaaa gcaatgtaaa gggcttctgg      4200
     gtttgttgaa tttctaagag cttttattcc aaacttggca accttgacgc gaccgctggt      4260
     cgatgcttgt aaagaaaaac aattcaaatg gacttacgag tgtgctgaaa aatttgaaga      4320
     aattaagaaa attcttacat ctgaccctgt tttaatttca ttcgacgaaa gtaaagaact      4380
     atttttagta acagacacct caattatagg ggtcttgggg gctctgttac acattaatga      4440
     caatgggttc tttcaagtaa tttcatacgc ttctaagcta ttgtctcctt cggagcgggt      4500
     atggggcagt acagatattg aattgaaagc agtggtgttt tctctgcatt acttccatga      4560
     gtattgttat caacacccag tgatagttat ctcagataac attgctctta aattttactc      4620
     taaggtccgg aatgcgaatc cgcgattaaa caagcttgct ttagaacttg ctcaatatga      4680
     tataaaagtg cagtttataa aagggaaaat gaatactttg gctgattttc tctcccgaaa      4740
     tatcgcagga atggacgaac ccggggtgcc gaaaatagag gatgatgacg atgagacggc      4800
     aattcaggaa attgtggagg gtagatttag taaattacga gaagaacagg agaaagacgc      4860
     cttttgtggt gatttaatca aggctttaaa agacgacatt tctatctctg agaaaactcg      4920
     aagagcgtca cgacagtata cgttgaaaga cagggtcctg atgaaaaaga attttaaaaa      4980
     taatgtggtg ggctttttaa ctgtgttgcc atattcgctc attccagttc ttttagagga      5040
     gtatcatgat aaaaatggtc actttggaaa aaacaaatta gcattaaagg taaaagaaaa      5100
     gttttatttc gaaaatttag ataaactttg tgctatgtat gtgcaacaat gtgataagtg      5160
     ccaaaggaac aaaggaactt caggggaaaa aattggtgat atgactcctt tgccgattcc      5220
     ctcacaaccg ttggaaattc tggtgttgga tacatcagga agttattgca ggtcaatgac      5280
     gaataaatac catatagtga gtctagtcga tcaatttagt cgctatatgt tcagtatgcc      5340
     ggtatacgca gcagatgcta aatgtattgc agatgtaatt tttaatttta tttgcaggtt      5400
     cacttttcct agagaaataa ggacagattt gggtccaggt atgcgtagca acataatgaa      5460
     agaattatca gaaaaattgg acatgaaact tagattttca gtggctcata atcatcagag      5520
     taacgggttg gtggaaagaa gtttcagaac tttagtccaa atggtaaatt gttatactga      5580
     gggtagcaac ccgcgtaatt ggtgcaagct aatagctccg ttaggtatgt tttgcttata      5640
     attcaacaat acacatgggt ctaggagtct cgccactaga ggcgctaact ggtatcaaaa      5700
     gtcgcctaaa tttggatttg gtattaattc cggaggaagt aaataagacg actgtaccgg      5760
     agcacatcag agctctggag gaagcgagat cattaatgaa aaatcatttg gagaggtcgc      5820
     aagaaaaatc cattcgaaat tttgctgagc ggcataggac agttgtgtat gagccggagc      5880
     aagccgtatt aatttatgac ccgaaccgta aagtaggagt aacagaaaaa atgcggaaga      5940
     aatttgagaa aacgggttat ataatcaaaa aagtaaacga tcatgggttg tatgaagtag      6000
     aaactgatag ccgaatagaa acctttcata tcagcagatt acgcaggtat tatagttccg      6060
     ctcatgaaga aatcggcaca gctgaaattt tggaactaaa ctatgtggta taaaaaaaaa      6120
     aaaaaaaaaa aaaagagaaa aagagaggaa aaaaaaagag agagaagggt gtacccttaa      6180
     taatgtaatt tacaggagaa ctaagcacag aaattggttg agcattatat ttccttacga      6240
     tggtttcagt tccctgacgc taatccttta ttttttgttt cagtagcgga attcaattat      6300
     tttctttagc ggtcttcatt gccacgtgga gtcatgcatt ttcagcacga gtggaggaaa      6360
     tgacagcagg gataatattt cagaaaattg ggccagtagg tactgtattc atcggcttca      6420
     tattcggtca gcttaaagta caatatctcg caattaaggg cacaggatgt gcagttggaa      6480
     agcgagttcc tccatttgca atcatttatc gctaacgtgg ctaaactgtc aaaaattaaa      6540
     acaacattgc ttgcggaagt gagagattta catggtgagc tgaccgaata tgtgactgag      6600
     atggaagcgg tattggacct ggtcccccaa gaaaggaaac cacgctctct gtgcgacggg      6660
     ttcggcagac tcgtctcgag cttgacgggg ttaatggatg acgaggacag aaccacggtg      6720
     caagggagcc tcggggatct tcaaggcaga gtagacgagc tggaggctga aataacacct      6780
     cacaaggcaa ttatccaagg gatgctcaac gggacgatgc agaacgcgaa aattcttaat      6840
     gcattaacac gagagatggt aactaatggt aacgctattg gagatctgag gagcgcagtt      6900
     gacctcgagg caaaactgcg tgagataagc ttctgggttg cgaaactgcg gttcgagaga      6960
     tcgcagctac gacttgggct cgagggtgct ctggaaggaa cattgagagg agaattattt      7020
     cctcctcaat atttattcaa cgtcctgaga cgcattgaag tagggttagc cgaacagtac      7080
     aggcttgtaa ccgaagttac ggctaaaaaa ctaaaagttt tttatgattt agggaaggtg      7140
     agtttaagta aaattaggga agaactagta atcaccattg attttcctct gagaagggta      7200
     ggaatggagt tcgtgttatg gaaattaata gcaataccgg tttttcatcc ggcgttgcag      7260
     tcatttgtcc aacttgacgt gaaggattat ttaataatgt catcagactt caaatggttt      7320
     gcagccctta gttcacaaac agtggacgaa tgtaaaaaat cagtcaatat cactgtttgc      7380
     ccagcaaaag tgccattatc catggaaact gtcaatgcat gtgaattcga gttgttttca      7440
     agtaagaagt cttctaattg tgagaaaaga atactttcaa acaaacccga tgggtatttt      7500
     ctacggttgg ggaacaaatg ggttttctcc gtaattaact cgacgaaatt aagcataaat      7560
     tgcgggcagc ggcatgagtt tcgagttgtc accggagccg gcgtgctccg tggactgcag      7620
     cactgcgata ttggaacgac aaagcagttg atgttcggag gagtcgagct gacgtcagag      7680
     atggtcgggg agtgggagga ctcagtgatt cccactatcg atggcgtcgc gggtctgacg      7740
     gtaaatgagg agcaggccct cgaggaagag aaggagaggg gggacctggc tgagaatgtg      7800
     cggcagttcg cggcgcagtc tgccgaccga gctatgctca gcgcgcttct ttcaacttta      7860
     tccgaaaggc gaaggagtag gccatgggtt tctccacaaa ttcatttata tggcctttcg      7920
     acattggtcc tttttctggc cttgttggga gtgttagtgg ggtggcggct gcttcaggcc      7980
     tccgtggctt cgatagcgag tcccattcaa gcgaggcgat ccaacgcctg aggtcaagtg      8040
     agaggggcgt tgtttttgtt tttttttttc acctttttac cacgtaaaaa ggcggacagt      8100
     ctttgtgggt ttcgtctgat acgaaattct ctggtggatg gcgtcgagtt cgaccccctc      8160
     ccctctgtcc taagagtcat gagactgagg ggataacgaa ttaatagaga gtatataaca      8220
     attattgatt aattaataag attttagtga ttttcagaaa aacgatgttt cgattaatgt      8280
     ataaaattat taaaagaata ccataattaa aatcccacga tattataata acttgatgat      8340
     tgaaaatgtt ccattctact aataacttaa tatttcattg gtttgatatt gtatattgta      8400
     aattataaaa aagaaaatat attaatataa aaaaaaaact tggaaaaagg aaaaaagttg      8460
     aaaaaaaata tatataaatt taaagggcaa aggcctaaga agaaaattca agagtaacaa      8520
     ttcttttggg agtttgtttt ctagttcata ttaatgttta aaaaaaaaaa aacagtagtt      8580
     cgtttttccc ttttggtaat gataataaga agttgttttt cttttacttt cttgtagata      8640
     cctatgttat agtcattttt tcaaagttct tgagcaaaat tttatatttg gccaccggta      8700
     attttgcgga attttaagtc attaactttt tgtttgtaat tattagggtt caatcaagat      8760
     gtgagagttg ttttaattgt atcttttctt tacatatata ctaattcccg gttattttat      8820
     tactgtgttt ctatgtcgcc tggcggtctt gtttctccag ttggctaacc tgtagacgga      8880
     gcggtgacgt ggcaagaatc gggggagtct ccaagaggaa gtgctcgacg gtgtgtcctg      8940
     cgttttccac ggtcttcatc caccttggac cttgggtggt gataggaagc ctctggtgcg      9000
     acgaaagttg tggccggcta cgtatcatgg ttgatgtagg ccgcagtgtt gctgctatgg      9060
     ttcatgtcgt cgctttaaac attggcacgt acgtcatccc tggcggactt gaccgtccgc      9120
     cctcagcact tcagcactct ggaccagcta atgttttcct ggatcaaact catgtctcac      9180
     gtctcggtgc aggagttttt cgcttgggtt catgaaggcg tcggcaaccg gatcaacttc      9240
     attggtttca aggccacgga gattacttcc cccgagtatg cgctacatgg tcgacgacga      9300
     agggacacgg tgctctgttc ttttcccgtt gacggagggg actcactaga ccacgggtct      9360
     tttccgcggc tattcatgga tacagcctgg ctcgtcgctt tggacaaaca gaaaccgaac      9420
     ggcggtgatc ggcactcctc tgcaggactc tcggacgatt cctgcggcta cacgaggatg      9480
     ggacgcaggg aagcacactg gacaaacagg attcggacgg cagcatcgac agttttattg      9540
     tacattttta atgattggta aatttttcag ggaagggaga agactgattt cagccaggtg      9600
     gtcctcgaga cgcttatccc tgattgggtt gattctgtcg ctggagtttg tctcatctac      9660
     gcaaaaatcg agtcataaga atgagatcag agcatttttt gtttttgtag cgagggggga      9720
//
ID   Gypsy-10_BTa-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-380
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 684-684 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 380 BP; 83 A; 78 C; 101 G; 118 T; 0 other;
     tgttgtggga ccagaccttg caggtttggt gtccacattc agctccgtag atgaggcatg        60
     cttcgcggca tggctcttcg tgagaaatcg cggaggtcca gggtcagtcc tatcggacgg       120
     agtttctcga ggcgcatttg tttatgtccg cgcggagagc ttccgttttt cggaagttca       180
     agcattggca taaaaggatg tgatatccac gtgggcgaga tcagtcatct aggaaagatt       240
     ctagagctag atccggtcgg cccctgtgag tgttgctatt catatagaga tttatataga       300
     gatttagata tatatgtatt cattgtgcta tttccatatt tggttgtgtt cttcatttgt       360
     gccagcattc ccccacaaca                                                   380
//
ID   Gypsy-10_CFl-I repbase;    DNA;    INV; 4220 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4220
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1026-1026 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           95..982
FT                 /product="Gypsy-10_CFl-I_1p"
FT                 /translation="MAHNNGSGVMDRETANPSRASSIDRVSVKVPPFIPTD
FT                 PELWFRMLEGGFVAAGITQDSTKYGHVITALDQRYALEVRDILMREERSYE
FT                 LLKTELIKRLGSSREQNTRRLLENEPLGDRKPSQFLRHLRGLAGTEFPEDI
FT                 LQTLWLGRLPRHVQALLAAHRDLTLDKRADIADSIADLYGPAGLIAETTAT
FT                 APQPARAHDDNLTRVMTEMVQRLAAIEVNTQGARQPTSGXCEACGRSRSRS
FT                 PSRSRSRSRSRSRSRRPGAASDICWYHWQYGDQARNCEKPCKYGDRSPGNE
FT                 QGSR"
FT   CDS           985..4053
FT                 /product="Gypsy-10_CFl-I_2p"
FT                 /translation="MAADDISPAISRRLFVSDRSTKLQFLIDTGADVCVFP
FT                 RSRLPGPRTKSSYELSAANDTTIATYGTVALALDFGLRRQFTWRFVVAAVS
FT                 KPIIGADFLVHYGLLVDMRNQRLLDATTQLTSHGRVIECDIPSVKTISGSS
FT                 RYHELLHQFPEVTRPDGAPKAVSHSTRHYITTTPGPPVAQKPRRLSTEKLK
FT                 AAKKEFEAMLRLGIARPSQSSWASPLHMVPKKGDDWRPCGDYRALNARTYP
FT                 DRYPVRHIQDFSQSLRGKNVFSTVDLVRAFNQIPVAEEDIPKTAITTPFGL
FT                 FEFEFMTFGLRNAAQTFQRFIDEVLQGLEFCYAYIDDILIASTSEVEHLKH
FT                 LRILFERLKKYGVVINPAKCVFGQPEVKFLGYLVSGAGTRPLPEKVDAIRA
FT                 YPRPDTVKKLRQFLGMLNFYRRFLPKAAETQAPLNNLLLGNVKGKSPVNWT
FT                 STTIEAFESSKECLAQATLLAHPEPDAPLAIFSDASDYAVGAALQQRIGDA
FT                 WQPLEFFSKKLSPAEAKYGAYDRELLAVYLAIKHFRHTVEGRSFTVYTDHK
FT                 PLVYAFHKKTAQCSPRQFRHLDFIGQFTTDIRHVSGEDNVVADALSRVEEV
FT                 EHTLDYEALAAAQQQDEELQRYLEEDSTLLIKKVRIPGTDVAVFCDVSTQT
FT                 ARPFVPQEFRKVAFDSLHQLSHPGINATVKLVTQRYVWPSIKADCRQWARS
FT                 CIQCQRAKISRHVSSPVGTFAPPSARFEHIHIDIVIMPPSEGYRYCLTMVD
FT                 RYSRWPEAVPLQDQEAXTVARALYDGWISRFGTPLRITTDQGRQFESYLFK
FT                 QLNHLLGTTHLRTTAYHPSANGMVERLHRQLKAAIMCQQQCRWTQSLPTVL
FT                 LGIRSAWKEDLQATAADMVYGQSLRLPGEFLGSLHRXNAADNVSDFVKELR
FT                 QHLRELRPTKISRHGTGKTFVFKDLATSEEVFVRHDGLKQPLQQPYDGPYK
FT                 VIKRAEKTFVVRMNGRDVTVSIDRLKPAYIMANDPVVSQDGNNEEDVPGPS
FT                 EKGTVITDLPDTTLRTQ"
XX
SQ   Sequence 4220 BP; 1063 A; 1222 C; 1068 G; 860 T; 7 other;
     aattggtgac cccgacgtga tctcttttct ttttcgcgaa ccgcgagtga tctgcgcagt        60
     gcatcgtagt gcttgtcgct ttgagatttt cagtatggct cacaacaacg gtagtggtgt       120
     catggaccgc gaaacggcga acccgtcgcg tgcgtcatcg atcgatcgag tgtcagttaa       180
     agtgccaccg ttcataccca cggatccgga gttgtggttc aggatgctgg agggcggttt       240
     cgtagctgcg ggaataaccc aggacagcac caaatatggc cacgttatca cagccctcga       300
     ccaaaggtat gctctggagg tccgcgatat acttatgaga gaggaacgat catacgagct       360
     tttgaagacc gagttgatca agcgccttgg ctcttcgcgc gagcagaaca cgcgtcgcct       420
     attagaaaac gagcctctcg gagaccgcaa gccgtcgcag tttctccgac atcttcgcgg       480
     ccttgccggt acggagtttc cagaggacat cttgcagacg ctctggctgg gccgtctgcc       540
     tagacatgtc caggcactcc tcgcggcgca tcgggacctc acgctcgata agcgagccga       600
     tatcgcggat tcgatcgcgg acttgtacgg cccggcaggg ctcatcgccg agacgacagc       660
     caccgcacct cagcctgccc gagctcacga tgacaatcta actcgcgtga tgacggagat       720
     ggtacagaga ctcgcggcca tcgaggtcaa tacccaagga gcgcgtcaac ctactagcgg       780
     awcctgcgaa gcctgcggaa gatcgcgctc acgctctccg tcgcgctcgc gctcccggtc       840
     gcgttcgcga tcacggagcc ggcgtcctgg tgcagctagc gatatatgct ggtaccactg       900
     gcaatacggt gaccaggcaa gaaattgcga aaagccgtgc aagtacggcg atagatctcc       960
     gggaaacgaa cagggcagtc gctaatggcg gccgacgaca tcagccccgc gatatcgcgc      1020
     cgcctctttg tcagcgaccg gtccacsaag ttacaattct taattgatac gggagccgac      1080
     gtgtgcgtat ttccacgctc gcgcctaccg ggacctcgta cgaaatcaag ctacgagctc      1140
     tccgcggcta acgacacaac aatcgctaca tacggaacag tagcgctagc tctggacttt      1200
     ggactgcgac ggcaattcac ctggaggttt gtcgtcgccg cggtctccaa gccaatcatc      1260
     ggtgcagact tcctcgtgca ctacggactc ttggtggaca tgaggaacca gcggctgttg      1320
     gacgcgacca ctcaactcac ctctcatgga agggtgattg agtgtgacat tccgagtgtt      1380
     aagaccattt caggctcatc gcggtatcat gaactcctcc accaattccc ggaggtgaca      1440
     cgaccggacg gagcccccaa ggccgtaagt cactcgacga ggcattacat caccaccaca      1500
     ccagggccgc ctgtcgcaca gaagccacgt cgcctttcaa cggagaagtt gaaggcggcg      1560
     aagaaggaat tcgaggccat gctgcgcctg ggaatcgctc gcccgtcaca gagctcctgg      1620
     gcatcgccct tgcacatggt gccgaaaaaa ggcgatgact ggcgtccttg cggagattat      1680
     cgcgccctta acgcgagaac ctatccggac cgatatccmg tgagacacat ccaggatttc      1740
     tcccagtcac ttcgtgggaa aaacgtcttt tccaccgtcg atctggtacg agccttcaat      1800
     cagattccgg tcgcggagga ggacattcca aagacagcca ttacgacgcc tttcggactc      1860
     ttcgagttcg aattcatgac cttcggtttg cgtaatgcag cgcagacttt ccagcgcttt      1920
     attgacgagg tgctgcaagg gctggagttc tgctacgcgt acatcgacga tatcctcatc      1980
     gcatcaacat cagaggtaga acatctgaaa cacctgagaa ttctgtttga gcggctgaag      2040
     aagtatggtg tcgtcatcaa cccagcaaaa tgcgtatttg gacagcccga agttaaattt      2100
     ctcggctacc tcgtttccgg cgcagggact cgcccgttac cggaaaaggt cgacgccata      2160
     cgggcctatc cacgacccga caccgtgaag aaattgcgtc aattcttggg catgttgaat      2220
     ttttatagaa gattcttgcc caaggctgca gagactcaag caccgcttaa caacctgctg      2280
     ctaggcaatg ttaaagggaa gtcgccagtc aactggacat caacgactat agaagcattt      2340
     gaatcaagca aggaatgctt agcccaagca accttgctgg ctcatcccga gcccgatgca      2400
     ccgctcgcaa tcttcagcga cgcgtcagac tacgcagtcg gagcagccct ccaacaacgg      2460
     atcggagatg cctggcaacc ccttgaattc ttttccaaaa agctaagtcc tgcggaagca      2520
     aagtacggag cctacgatcg ggagttactt gctgtttacc tagcaatcaa gcatttcagg      2580
     cacaccgtgg aaggacgatc attcacagtt tacacggacc acaaacctct cgtctatgcg      2640
     ttccacaaga agacggccca atgttcacct cgacaattca gacacctgga cttcatcgga      2700
     caattcacca ccgatatccg ccatgtttcc ggggaggaca acgtagtagc agacgctctg      2760
     tcacgcgtag aggaagttga gcatacgctc gattacgaag ccttggcagc agcccaacaa      2820
     caagacgaag agctccagcg atatctagag gaagactcca ccctcttaat aaagaaggta      2880
     cgcatccccg gcaccgacgt tgcagttttt tgcgacgtct caacacagac agcgcggccc      2940
     ttcgttcctc aggagttcag gaaagtcgca ttcgattcgc tgcaccagct gtcccacccg      3000
     ggaatcaacg cgacggtcaa gctcgtaacc cagcgctacg tatggccgtc gatcaaagct      3060
     gattgcagac aatgggctcg cagctgcatc caatgccaac gcgccaagat ctctcgccat      3120
     gtctcatcac ctgtcggtac attcgcacca ccttctgcca ggttcgagca tatacatatt      3180
     gatatcgtaa tcatgccacc gtctgaggga taccgatact gcctaactat ggtagaccga      3240
     tactctcgct ggccagaagc tgttcccctg caggatcaag aagctkcaac tgtcgcacgt      3300
     gctctctacg acggatggat atctcggttc ggcacgccgt tgagaataac cacggatcaa      3360
     ggcagacaat tcgagtcgta tcttttcaag caattaaatc acttgttagg tacgactcac      3420
     ctgagaacaa ccgcatacca cccttcagcc aacggcatgg ttgaacggct gcaccgtcaa      3480
     ctaaaagcag caatcatgtg ccaacaacaa tgccgatgga cacagagcct tcccaccgtc      3540
     ttgctgggca tccgctcagc ttggaaagag gacctgcaag ccacggcagc cgacatggtc      3600
     tacgggcagt cgctacgcct cccgggcgag ttcttaggat ctctmcaccg cgamaacgca      3660
     gcggacaacg tgtcagattt cgtcaaggag ctacgccaac atctgaggga attgagaccg      3720
     acgaagatat ctcgccacgg tacggggaag acattcgttt tcaaggacct tgctacctcg      3780
     gaggaagtct ttgtacgcca tgatggtctc aaacagcctc tgcaacagcc gtatgacggc      3840
     ccgtacaaag tcatcaaamg ggcagaaaag acgttcgtgg ttcgcatgaa cggccgggac      3900
     gttacggttt ccatcgaccg ccttaaacca gcgtacatca tggccaatga tccagtcgtc      3960
     tctcaggatg gcaacaacga ggaggacgtt ccaggccctt ccgaaaaggg cacagtaatt      4020
     acagacctac ccgatacaac actaaggacg cagtaatcac agacctacca gatacacaca      4080
     aacacacaca gcagaaaaca acactagaaa actcgaccaa ccacataacc aaatcaggca      4140
     gacgtgtccg cttcccggac cggctacagg gaggattttc ataaattctt atatatcgtt      4200
     aaacactagc aggagggttc                                                  4220
//
ID   Gypsy-10_CFl-LTR repbase;    DNA;    INV; 437 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-437
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1027-1027 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 437 BP; 119 A; 130 C; 66 G; 122 T; 0 other;
     tgtagggaca attgtctcct actccgcccg cgttacacac acacgcacac atgtccacac        60
     acgttcggaa atcctaccag ctttctaatt cccgcatgca tgcatccgct ttcacctcca       120
     cagatttaca acccttgcat gttccgcagc cgtatagatt gccatgcaac atttggcaaa       180
     cacacggctt ttccttacgc aatccgtccc ttgtaaaatt tctccttcca taagaaaaaa       240
     ctcctctcgg ttcgtgcatg ccgaacccgg atttttccag agagcagtaa cttttccgcc       300
     tcgagacaca tcacttgctc gcatacagta cacatccaca cctacacata gtatacaggc       360
     attcgtaatt gtaattagaa gcaaatacag aattattgtt tatcataacg ttcagtttta       420
     attgtgtctt acccaca                                                      437
//
ID   Gypsy-10_CoFl-I repbase;    DNA;    INV; 14162 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-14162
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2270-2270 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           697..2904
FT                 /product="Gypsy-10_CoFl-I_1p"
FT                 /translation="MENFDEAHSDVVSVREDEIPSYPENESESEILTVFLE
FT                 HSPETQMEWEKMGKKQRMLMLKFLKKMKPGVIREKVSQTTSCIMGAGAEYS
FT                 NTVRNDAANTSPLKNADYTAGNGMSEISRDVNSHSKDRFDSKDTQDTLQHA
FT                 FRRGEKQAAQQTAQQCVTQFSEEALTQNCRELVFGHKNNWNLPSRTSEEIR
FT                 MYGGQQTGIPNFSGARMHDAGPSYEPTGPINERVRGQPIAPSSDWPFRDNN
FT                 MHGEYILREQQHQAQPNPTYINPIMSQQRVENTYPVSMHYSALSHVNSAAS
FT                 GIPIFNGDPINFPLFEQMVRTANLAVPPQYEKYFIGTLGGKLRGMAADQFC
FT                 TRLSLFNTVDAFLLALSRRFGSMGGIDTQLAQLKSLTQLNSESVIQYCSRV
FT                 QRLHNRIMMTHDANPQLSQIQKTALKQSADRESAKQFIYGLKAPYNWNVAG
FT                 VKPVTLEEAIEAAIDVDNELSLRQMAPNDFSTYATRESCFGKRNPRIGMVI
FT                 SDAPEGKSDTDEWDGIKDVKWCSYCQEHCLHSTSGCEKLWRDAKNGRIKDP
FT                 DRPETEPPKRLTEMRDKNEGRPAYDDQAPNVQYSNPDPRNYHNKHNSYTSN
FT                 YNSYNNNNRNFNGNNSRPPANNNRNNSRPFEENRNFNGRNRGNNYAPNNNY
FT                 NNYNQQRENNYNNYAPGNNNYNNYNQRRENNYNNYGPRDNNYNLYNQRGNQ
FT                 NNQYNHEKNTRTDGSRAENLNSQDARCAPQASGIPQ"
FT   CDS           2817..9308
FT                 /product="Gypsy-10_CoFl-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="EKYENRRVTRGKFKLPGCSMRSPSVGHPPVDRKITKT
FT                 LDSRKTASVEVRESLAASARVDMMTRRDNLPRNSPQMEVGRNNNGSEPQRE
FT                 AKINIFLAGRTPPSVFMTSTQLRGGEAKFYADTGAEISIIKEDSILPNAFF
FT                 DVRNRVRIVGVTHGERSTLGVVEIPLNGLMCRLHVVPRDFPIDGEGIIGWD
FT                 IFKLYQGRISAAENIFELGGMKINLIEPEMLEILARSRQVIYARVGVNSEK
FT                 IKVGWVPLQRMREGVLFGNFIATNNGGKVYAECVNTLNETISIPVPEIELL
FT                 ECEVMREADPFSVEGDDARGVNEAIIRLFEADGRERRKMNKVEYGVTNNHT
FT                 SGGNNGDFKNTDNLGRLSDKGKIARIDKIMQLIDVSSCNEEEKSHVRKLIE
FT                 YNPFVFGLDGEPLKATHILKHRIITTTDKPVTAKRYRYPPALREQMKKEIE
FT                 KLLEQGIVEPSKSPYNSNMWIVPKHAGPDGEKRWRVVTDFRQLNEITVGSC
FT                 HPLPFQSDILEHLASARYITVVDLKQGFFQIEIHEDDAHKTAFSGPDGHYQ
FT                 YKRMPMGCTDSPNTFLRAMSLALAGLQGHEIEVYLDDIMVFAPNLEEHGRR
FT                 FIRLLKRLSEANLTIEPKKCQFLKREAKVLGHVVGNGQIKTDPKKIEAAKK
FT                 YPRPTNAKKIKQFLGFVGYYRRFIQNYAKIAQPLSKLLRKGTEFKWEEQQE
FT                 QAFKTLVDALCSEPVLIAPNLDKPFIVTTDASDYAIGAILSQGELGKDRPC
FT                 EYASRCLRGSELRYPTYDKELLAIVFAKEQFRPYLFGRKFTVVTDHEPLKH
FT                 YHTSKKPDIRFNRLKAELRGYEFDVVYRPGISNKAPDALSRNPVIGEGEIN
FT                 TERPRQELYQLADEQEKEGLADSDGPPARIFKIRATRKQRIQGNTKKGKII
FT                 YSDSEDSDKKVQRKKQNFDGRKGNKYETKIDGQADGEGDSESEEKVGINEK
FT                 LSRKIKKTVRKRGRPRKNIIVSNLKTETDTERNEIPSKDIIVANCGTPVIM
FT                 NSESENHSTGLDDWGWQLIQASLAAEEARRVKGTRKLTEANEVAGSIVTFG
FT                 KGVFEGRGVEASERADQARERSKEEESEGETPQYEHTANEPLTDGTYECNK
FT                 REKKKQLYEGQNENKLDMEIEGTGSDASDDEVEKMTRPIATAGDDPISQGM
FT                 TDGKLGYIMKEPGFRRGVKTTSTPAAVLIEERKRKLRKRQLDTLNRQKPNF
FT                 SITPTIMSPSKEIIIANCDTPQTSNSTTAQNTEEEERRSAELSVSAETNFA
FT                 PTTEADKEPDIHDLLEGRSDELRAQVMIDVRRRDVEGRPGMRIDVWEPNEK
FT                 IPGEKAPPEEREKTDPILRKSDKRVQFEEPGDQTVKEPNLPSDTTALTDKW
FT                 LAYLNDNTRRETNECIQPHKILFKVPGLPYDPPGNCLFYSLIFLFNLNLST
FT                 DELRMILKNSEYLQKCREPEETENILMSRTEYGNGECIYIFSQEFKKNVCV
FT                 HLKLNRENYIYAHYIATEKEGVGHLHLEGNSENAHYVPLVQNSITESKNDS
FT                 HNDDGSSCERREEHASEPERDGETNQREWGRDKESQSGTEQNPTDGETNTN
FT                 MRVEEGEGDNHPTNSDDESSENTMEGEVGQVNELNNALCETESENETNTVT
FT                 HSPSMEKYTVCRTRLPNERPPWAPKEGEDPPLCQKLSKIENHPFRYLENLA
FT                 FMTVTEAVPNTEAIDALHERGYINPTRMNNEEKVVGEAKSTKERKVTVIYM
FT                 YVKEHFEEAALKSNIKKCVKALRDVIIANNIKTIGIVRDLAILNLTQWGYF
FT                 ADIFEEVFKDTRLAAVLYTNTLIIPPTSQRLKIIKEYHEAAIGGHRGMNKT
FT                 YSRIAKDYYWRNMRPDIRQVILGCPSCQTKKLVRVKTKQALLITDTPSRPF
FT                 EKISIDYYGPISKPSTNNYTHILSMQDWLTKFIVLVPVKRATAEETVRAIT
FT                 DKFIAYFGPPEHLLSDRGTHFMNKSMDELAKLFKIDKMGSTAFHPQTNGAI
FT                 ERMHHTLTEYIKAYVEKEDQWDEHLPLCMHSYNTTDHESTGYSPHELVFGQ
FT                 RARTPTSFKTSSNGQTSNEYFNELVTTLTEMRTIAAMNQVQAKYRSKYYYD
FT                 RKLNTRYYLEGEMVYVLKEPSKGKFDAQYEGPYEITGIDYAKKNVKLQRKD
FT                 EVRISHVDKIKKACVVKAPLENANTEKKCGSTKVNH"
FT   CDS           11890..13539
FT                 /product="Gypsy-10_CoFl-I_3p"
FT                 /note="Baculovirus F protein."
FT                 /translation="MATHKTIKALQGVETAYRAVVGQEVRSQVETVQVLQG
FT                 QISESNKDKIRELTELNLTSTTDITKYLKEQIRVSAFGDHEQTLQIIKKYE
FT                 DKAGDVKEEGLKIFTDWVSGYDRMPEIIQEFEQLADKLAAKFETATDIIYL
FT                 ASRGISHLPEAALKTISEAEILVSQFRPDLRVPGDEGTTTEERVGKIAEIA
FT                 TVALNRKVIYHIEIPLVTQEELDLLRITPLPVEQEGFNITNMVAYLQPTYE
FT                 YIVSSMSEKRFAPISRQAVDQCKKLGQINICAQIEPTQEVEKDHPCEIRLI
FT                 LGETIDNPEECPIVLAKLKGAYWTRLHAKNQHAFSTRREEKVHVQCEHTKH
FT                 GTIKVSHAGVVDLAKDCTAQASGTRLEPGQEEGESHVVNLEGPTLNLKKII
FT                 QEMKGTKGDELLNLIKIVIERDGLQELGSQEHGPEDKLTIGTKLEDIVQRV
FT                 REVGQTEGKFSNWEGYAWMAAEIALGTAAGSFGFLKWGGPLILNLARMLTG
FT                 RRNRSGSEGAAVGAVTAQPIMLQTIQRPVASQNQVRVAVRSAPPTADKMKR
FT                 PRA"
XX
SQ   Sequence 14162 BP; 5135 A; 2668 C; 3365 G; 2990 T; 4 other;
     gttttggtgt cagaagtggg atggtcatcg cgattaaata aaaataaatt ttttttttcg        60
     gtttttgtcg acgataaagt atcgactctc gcgatttttg ggaaacacac atagtgtcgt       120
     gccacgaagt gaactaggaa ctgctacgag agaaattagc ggagcgagga gttgctgaag       180
     tacgaaaaaa aagcagcttc aatcaaggac caaggcggag gatacccggg actacgatag       240
     aaatcaagca aacaaggatg ataaagatct tggtcgccat tattctagcc gggagcatat       300
     ggtaagtact tgagatttat aaataaataa atatatttaa ctgtcctagg ggtcctgtta       360
     aattttttta gtgcgttata aatttatttt tttgctatat cggttttgcg ttcggtatcc       420
     tcctcatagt atcggcggtg cgtcattagg gtaatttatc gtgagtcaga ggaaaatttc       480
     ggaccgtgaa aataaattgg tcagattgaa agtaaggaaa taataaataa ataaataata       540
     aattagacac acggtaaatg ttaaagtaaa gcggttttgt catcgtgaga taggaacgca       600
     aagaatcgta cagaaattta cttataagtg tttaagcgct ctcatacaga caggaaataa       660
     agaattaaaa aaaaaaagaa taataaagaa tctacgatgg aaaacttcga tgaagcgcac       720
     agtgatgtag taagtgttag ggaggacgaa attccctcgt atccggaaaa cgagtcggag       780
     tcagaaatac tgaccgtatt tttagagcac agccccgaaa ctcaaatgga atgggaaaaa       840
     atgggtaaga aacagcgtat gctaatgttg aagtttttga aaaaaatgaa accaggggtg       900
     attagggaga aagtttcaca aacaacgtca tgcataatgg gggcgggtgc agaatattca       960
     aacaccgtaa gaaacgacgc cgcgaatacg tcacccttaa agaatgcaga ttatacagcc      1020
     ggaaatggga tgagcgaaat ttcgagggac gtaaactcgc actcgaaaga taggttcgac      1080
     agtaaagata cacaggatac gcttcaacat gcgttcagac gaggagaaaa acaagcggcg      1140
     cagcaaacag cacagcaatg tgtgacacag ttttcggagg aagcacttac acaaaattgt      1200
     agggaattag tatttggcca taaaaacaat tggaacttac cgtcaaggac gtcggaagag      1260
     ataagaatgt atggggggca gcaaacggga atcccaaatt tttcgggcgc aaggatgcat      1320
     gacgctggac ccagctacga acccacaggc ccaataaatg aaagggtgag aggccaaccg      1380
     atagcaccgt catctgactg gccgtttcgg gataataaca tgcacgggga atacattttg      1440
     cgagagcagc aacatcaagc gcagccaaat ccgacttaca taaaccctat catgagtcaa      1500
     cagcgagtgg aaaacacgta ccctgtcagc atgcactata gtgcactgtc ccatgtcaac      1560
     agcgcggcga gtggcatccc tatattcaac ggagatccaa taaactttcc gctttttgaa      1620
     cagatggtga ggacagcaaa tctagcagtt ccgccgcaat atgaaaaata ctttataggt      1680
     acactaggcg gtaaacttag ggggatggcg gcagatcaat tttgcacccg gttatcactg      1740
     tttaataccg tagacgcatt tttactcgcg ctgtcacggc gattcgggag catgggaggc      1800
     atagatacac agctagccca acttaagtca ctgactcaac tgaacagcga gtcagttatt      1860
     cagtactgca gccgggtgca acggttgcat aatagaataa tgatgactca tgacgccaac      1920
     ccacagctgt cccagattca gaaaactgcc ctaaaacaat ccgcggatag agagtcagcg      1980
     aaacagttta tatatgggtt gaaagcgcca tacaattgga acgtggccgg ggtaaaacct      2040
     gtaacactgg aggaggccat tgaagcggct atagatgtag ataacgagtt aagtttacgt      2100
     caaatggcac ctaatgattt cagcacatat gcaacacggg agagttgttt tggtaagagg      2160
     aatccaagga taggcatggt aatcagcgat gcgccggagg gaaagagcga tacggacgaa      2220
     tgggatggca tcaaagatgt taagtggtgc tcatattgtc aggagcactg tctgcactct      2280
     acgagcgggt gcgaaaagct atggagggac gcgaaaaacg gaagaataaa agaccccgat      2340
     aggcccgaaa cagaaccacc caagagacta acggagatga gggacaaaaa tgaaggaaga      2400
     cctgcgtacg atgatcaggc acctaatgtg cagtacagta accctgaccc tagaaattac      2460
     cataacaaac ataatagcta cacatccaat tataatagtt ataacaataa taatagaaac      2520
     ttcaatggca acaatagtcg ccctccggcg aataataaca ggaacaatag taggccattc      2580
     gaagagaaca ggaatttcaa tggtcgaaat aggggaaata attatgcacc caataataat      2640
     tataataatt ataatcagca acgagaaaac aattataaca attacgcgcc cggcaataac      2700
     aattataaca attataatca gcgacgggaa aataattata ataactatgg acccagggac      2760
     aacaattaca acctctacaa tcagagagga aaccaaaata atcaatacaa tcatgagaaa      2820
     aatacgagaa cagacgggtc acgcgcggaa aatttaaact cccaggatgc tcgatgcgct      2880
     ccccaagcgt cgggcatccc ccagtagata ggaagataac aaaaacactc gacagcagaa      2940
     aaacggcaag cgtagaggta agagagtcgc tagctgcgag tgcgagagtt gatatgatga      3000
     caaggagaga taatttgcct cgaaacagcc ctcaaatgga agtaggacga aacaataacg      3060
     gaagcgagcc tcagcgtgaa gcaaaaataa atatatttct agcaggtagg acaccccctt      3120
     cggtatttat gacaagcact caactgagag gtggggaagc aaaattctac gcggacacag      3180
     gagctgaaat ttctattata aaggaagaca gtattcttcc aaatgcattc tttgacgtga      3240
     ggaaccgagt aagaattgtg ggtgttacgc acggagagcg tagcacttta ggtgtagttg      3300
     aaataccact gaatggcctt atgtgtaggt tgcatgtggt cccacgcgac ttcccaatag      3360
     atggggaagg tattattgga tgggacattt ttaagttata tcaaggtcgc ataagcgcgg      3420
     cagaaaatat ttttgaatta ggaggaatga aaattaattt aatcgagcca gagatgctcg      3480
     agattcttgc taggtcaagg caagttatat atgcccgcgt cggggtaaat agcgaaaaaa      3540
     taaaagtagg gtgggttcct ttgcaaagaa tgagagaagg agttttattc ggaaatttta      3600
     tagccacaaa taatggtgga aaagtttatg ctgagtgtgt aaacacacta aatgaaacaa      3660
     taagcatacc tgtaccggaa atagagttat tagaatgcga ggtgatgcga gaggccgatc      3720
     catttagcgt cgaaggggac gacgctcggg gcgttaatga ggcaattata agactttttg      3780
     aggcagatgg ccgagaaagg agaaaaatga acaaagttga atatggcgtt acaaataatc      3840
     atacaagtgg cgggaacaat ggtgatttca agaacactga caatttaggt aggttgtcgg      3900
     ataaaggaaa aatagcgaga atcgataaaa taatgcagct tattgatgtt tcaagctgca      3960
     acgaggaaga aaaatcacac gtccggaaac tcatagagta taatccgttt gtatttggcc      4020
     tagatggaga accactgaaa gcaactcata tattgaaaca ccgcatcata actacgacgg      4080
     acaagcccgt gacggcgaag cgctataggt acccaccagc gctaagggaa cagatgaaaa      4140
     aagagataga gaaattgctc gagcaaggaa tcgtcgagcc ttcgaaatcg ccgtacaatt      4200
     ctaacatgtg gattgtaccc aagcatgcgg ggccggacgg ggagaagcgt tggcgcgtgg      4260
     taactgattt taggcagctc aacgaaatta ctgtaggaag ttgccatccc ttaccattcc      4320
     aaagtgatat actcgagcat ttagcgtcag ctcgatacat tacagtagtc gatctaaaac      4380
     agggattttt ccaaatagaa attcatgagg atgacgcaca caaaacagca ttttctgggc      4440
     cagacggtca ttatcagtat aagagaatgc caatggggtg tacggactcg ccgaatacat      4500
     ttttaagagc gatgtcactc gcgttggcgg gtctacaagg gcatgaaatc gaagtgtatt      4560
     tggatgatat catggtgttt gctccgaacc tcgaagagca cgggaggcgt tttattagac      4620
     ttttaaagcg gctttcggaa gcaaacttga caattgagcc gaaaaaatgc caatttttga      4680
     aacgcgaagc gaaagtactg ggacacgtag taggaaacgg acaaataaaa acagatccaa      4740
     aaaaaatcga agcagcgaag aaatatccga gacctacgaa tgcaaagaaa atcaaacaat      4800
     ttcttggatt tgtcggatat tatagacgat ttatccagaa ttatgcaaaa attgctcagc      4860
     cgctctccaa actcttgaga aaaggaacag agttcaaatg ggaagagcag caggagcaag      4920
     ctttcaaaac attagttgac gcattatgta gtgagccggt acttattgca cctaatctag      4980
     acaagccttt tatagtcaca acagatgcgt cagactacgc aataggagca atattaagcc      5040
     aaggcgaatt ggggaaagat agaccgtgtg aatatgcttc acgatgcctt cgagggagcg      5100
     aattacgcta cccaacgtat gataaggaac tgttggctat agtgtttgca aaagaacagt      5160
     ttcggccgta cttatttggg cgcaaattta cagtggtcac ggatcatgag ccattaaaac      5220
     attatcatac gtcaaagaag cccgacataa gatttaatag gctaaaagcg gagctacgag      5280
     gctacgaatt tgacgtagta tatcggccag gcatttcaaa caaagcaccc gacgcactct      5340
     ctcgaaatcc agtaatagga gagggagaaa taaacactga gcggccacgc caagaactgt      5400
     atcagctggc ggacgaacag gagaaagaag gactagccga tagcgatggg cctccagcgc      5460
     gcatttttaa aatacgagcg acccgtaaac agcgtattca gggaaatact aaaaagggga      5520
     aaattattta ctctgattca gaggattcgg ataagaaagt acagagaaaa aaacaaaatt      5580
     ttgatggacg gaaaggaaat aaatatgaaa cgaaaataga tggtcaagct gatggtgagg      5640
     gagattccga atccgaggaa aaagtaggaa taaacgaaaa attaagcagg aaaataaaga      5700
     aaacagtgag aaaaagaggt cgcccaagaa agaatattat agttagcaat ttaaaaacag      5760
     aaacagatac ggaacgcaac gagattccgt caaaagacat tattgttgca aattgcggaa      5820
     caccagtaat aatgaatagc gaatcagaaa atcacagtac gggactcgat gattggggct      5880
     ggcagctgat acaagcaagc ttggcggccg aagaggcgag gagagtgaaa ggcacccgaa      5940
     agttaacgga agcaaacgag gtagctggaa gcatcgtaac atttgggaaa ggtgttttcg      6000
     aaggcagagg tgttgaagcg tcggagagag ccgatcaagc acgagaaaga tcgaaggaag      6060
     aagagagtga aggagagaca ccacagtacg agcatacagc aaatgagccg ctcactgacg      6120
     gtacttatga atgtaataaa agggagaaaa aaaaacaatt atatgaggga cagaatgaaa      6180
     ataagctcga tatggaaata gaaggcacag gttcggatgc atcagatgat gaagttgaaa      6240
     aaatgacgag accaatcgct acggcagggg atgatcctat ttcccaagga atgacggacg      6300
     ggaaattagg ttatattatg aaagaaccgg ggtttcgaag gggagtaaaa acgacgagta      6360
     caccagcagc agtactaatc gaggagagaa aacgaaaatt gcgcaagaga caactggata      6420
     cattaaacag acaaaagccg aatttttcga ttacgccgac aataatgagc ccttcgaagg      6480
     aaataataat agctaattgt gatacgccac aaacgtcaaa tagtacaacg gcacaaaaca      6540
     cggaagaaga agaacgtagg tcagcggagc tctcagtgag cgcggaaaca aatttcgctc      6600
     caacaacaga ggcagacaag gaaccggata tacacgattt gttagaggga agatcagacg      6660
     aactgcgggc gcaagttatg atcgacgtaa gaaggcgaga tgtagaggga aggccgggaa      6720
     tgaggattga cgtatgggag cccaacgaaa aaatacctgg ggaaaaagcg ccaccagagg      6780
     aaagggaaaa aacagatcca atattgcgta aaagtgataa gcgagtccag tttgaagaac      6840
     caggggatca aacagtaaag gaacccaact taccgtcaga cacaacggcg ctgacagata      6900
     agtggctggc atatcttaac gataatacac gaagggaaac gaatgaatgc attcaacctc      6960
     ataaaatact tttcaaagtg ccaggactac cgtacgaccc gccgggaaat tgcctatttt      7020
     atagcctaat ttttttattt aatcttaatc tctcgactga cgagctgaga atgatattaa      7080
     aaaattcaga atacctacaa aagtgtagag agccagaaga aacagaaaat atactaatgt      7140
     cgcgtacaga atatggaaat ggggaatgta tatacatatt ttcgcaagaa ttcaaaaaga      7200
     acgtgtgtgt acacctcaag ttaaatcggg aaaattatat ttatgcgcac tatattgcaa      7260
     cggagaaaga aggggtcggc cacttgcatc tggaaggtaa cagcgagaat gcccattacg      7320
     tgcccctagt acaaaattct attaccgagt cgaaaaatga ttcacataac gatgacggta      7380
     gtagttgtga aaggcgggaa gaacacgcga gtgagccaga aagagatgga gaaacaaacc      7440
     aacgtgagtg gggaagggat aaagaaagtc aatcaggaac agagcaaaac cccaccgatg      7500
     gagagacgaa cacgaatatg cgtgtagaag aaggggaagg agacaaccat cccactaaca      7560
     gcgatgacga aagctctgaa aatacgatgg aaggagaggt agggcaggtt aatgaattga      7620
     ataacgcatt atgtgaaaca gagagcgaga acgaaactaa cacagtcaca cactctccat      7680
     cgatggaaaa atacacggtg tgcagaacac gcctgccaaa tgagagaccg ccatgggcac      7740
     caaaagaggg ggaagaccca cccctgtgcc aaaaactaag caaaattgaa aaccatccct      7800
     ttaggtatct cgaaaacctg gcgtttatga cggtaacgga agcggtaccc aatacggaag      7860
     caatagatgc tttacatgaa agagggtaca taaatccgac gcgcatgaac aacgaggaga      7920
     aagtcgtagg tgaagctaaa agtactaaag agagaaaggt aacggttata tacatgtacg      7980
     taaaggagca ttttgaggaa gcggcgctca aatcgaatat taagaagtgt gttaaggctc      8040
     ttagagacgt aataattgca aacaatatta aaacaattgg aattgtcagg gatctagcga      8100
     ttcttaatct tacccaatgg gggtactttg ccgatatttt cgaggaagta ttcaaagaca      8160
     ctagattagc ggcggtgctc tacaccaaca cattaataat tccaccaacg agtcaaagat      8220
     tgaaaataat taaagagtac cacgaagcag ccataggcgg gcacagaggc atgaacaaga      8280
     catatagtag gatcgcgaag gactactatt ggagaaacat gcgcccagac ataaggcaag      8340
     tcattttggg atgcccttca tgtcagacga aaaaacttgt aagggtaaaa acaaaacaag      8400
     cgttgctcat tacggacaca ccgagcagac cttttgaaaa aatttcaata gactactacg      8460
     ggccaatcag taagccatcg acgaataact acacacatat tttgtccatg caagactggc      8520
     taacaaagtt tattgttctt gtaccagtaa agagagcaac agctgaggag accgtgaggg      8580
     caataaccga taaatttata gcatatttcg gacccccgga acatctactg tctgaccgag      8640
     ggacccattt catgaataaa agcatggatg aactagcaaa attatttaaa atagacaaaa      8700
     tgggtagtac ggcatttcac cctcaaacaa atggggccat cgaacgaatg catcatacgc      8760
     tcaccgaata tataaaagcc tacgtagaga aagaagatca gtgggacgag cacttaccat      8820
     tgtgcatgca ctcatacaat actacggacc atgagagtac agggtactca ccgcatgagc      8880
     ttgttttcgg gcaaagagcg agaacaccta ctagctttaa gacatcatcc aatggccaga      8940
     cgtcgaacga atattttaat gagctggtaa cgacactgac ggagatgaga accatcgccg      9000
     caatgaatca agtgcaagcg aaataccgct caaaatatta ctacgaccgc aaattgaata      9060
     cgagatacta cctcgaggga gaaatggttt atgtgttaaa agagccgtcg aaagggaaat      9120
     tcgacgccca atatgagggc ccttacgaaa taactggcat cgattatgcg aaaaagaatg      9180
     tcaaacttca gaggaaggac gaggtgagaa tatcccacgt ggataaaata aaaaaagctt      9240
     gcgtagtaaa agccccgtta gaaaatgcga atacagaaaa gaaatgcggg agtacaaaag      9300
     taaaccacta gcttcgctta aattttcgcg gcccccggac gcaccgcgaa aatacaatga      9360
     aaaatggaga acaagagaat attgactact atttttttta attgcctaag caaacataag      9420
     agtggaatgt ggcgctattt catataatta taaataaaaa aaaaaaaaaa aaggaaaatt      9480
     tttttttaga tattaaggta aatgtaccaa tacttggcca ccaaaaaaaa ttggtcccan      9540
     annctggcca caaacaaaaa aaaaaaaaaa atttattaac attcacgcta aaaattatat      9600
     aaatttatat atgtatacag gaagacgcgg gggcatgcag aaaggtaaaa caatactcgc      9660
     gagtcgttta ttttactaca attttgtttt atttttacat gtgtgaatac aagcattatt      9720
     tttattattg gggtattttt ttttttctcc ttctctgtct ttcgtgggtc acgccttaag      9780
     tacgctccct cctgcgtccc cgtcctcgtc cccgagggag acgatcaaca gccaagtccc      9840
     ggaacccatc caccagcgag gacacattca gactaggcgg tgcgggccga ttgctggaag      9900
     tacaattaca gcttgtgcaa accgcgggcg gattatgcgt tgcgatggta aacagtccgt      9960
     tgttcccccg ttcgacctgc aaaaggaaaa aggaaaatta atacgaatca taaaattttt     10020
     cttacaagta taacgaataa gagaggcctt acacgtataa cgggccgccc ttccagcgga     10080
     aaaccgtctt ggtcggaggc tgatatctca accaccacca cgatgaacgt accgtggcac     10140
     gtacaaccga cggctacgac gtacgaggcc ccgggctccg aaacgttgca gtgggttcgc     10200
     agtacggaac ccgacgacgg aaaagaagca gtccagcggc agtcctggaa caggacagtg     10260
     aacgatcgtc cggaagggca gtagacatcg cagcatgcga cgccaccccg gtacttatac     10320
     ctttgcacag gcagaggcac agcgcctgtg ggccagtccg gctcgcaaag agggagggga     10380
     agagagaaga acccgtgagg gttcacgacc aatctcgttc ccagctagaa aaaaagagga     10440
     aaatttttaa ctaagagact caaaagcaat gtcaaatgtt aagaaattaa cgtaatacgt     10500
     accgcaccgt gggtcggaca agtgataggg gccagaactg taggcccctc aagcaccacg     10560
     acttgagccc cacgggtacg tccgacggag ggcactcgcc ggcaaataaa caataagatg     10620
     gactgtaaga gaaagcaaat taaatggata tatacatatg tatctaggta caggaaaact     10680
     tactaaaaaa aaaaaaaaaa aaaagggaaa tactcacatg cgagcagctg cagcacctca     10740
     gaagatcttc catcacagaa ccttcgagga tggaacatac actaccgtcg accgccgcaa     10800
     acccggtaac acgagtgtta tcgtacggta ggtttgcgaa atcacgcagc cggcgcacaa     10860
     aatcaaccgg attcacagaa gaaaacgcca ttttcgcggg gtagtacaag aataacaagg     10920
     taataaggaa agtagagaaa ataacgccaa atccaacacg tattgagaac acaagggaaa     10980
     agggcaaaag tcactggaaa ccaagtagcg aagttgacac tacaaagtca aagtaagcac     11040
     tgacgaaata tagccaaact atccaaaaat ccttactacc cgctcctctc gataaaatag     11100
     aaaaggggaa aattagcatg ggaataataa acgaggaaaa cttacagggg cagcatgtgt     11160
     gacaattgcc gatccgtagt accacatgcg tcttcctgtt gtaaatgact cacagtgccg     11220
     aacgtgccga tagacagaca gaatacaata attttgtcgc atagcgatag gttgttatat     11280
     atatacatat acatatatac acatacatac acctcggtca agcacacctt aaatataagt     11340
     taaatgtaga gaataaggga atacaaaaaa aaaacatgta caagtagagc cacattcccg     11400
     acttgacttg caaaagttcg atcttatccg tccttaagaa tcattgtttc ggagattaac     11460
     attgctggta cgaaatatta ggattcagaa ggggtaatcg ggagccgtac aatagtgaca     11520
     ttccgaggaa tttatttttt ttttcttcta ctctttttct ccttttctct caaataatct     11580
     gggaattaat ttacaaaaag ggaaatgtag gtatcataaa agaaagtatc tattctatgt     11640
     tttagggggg aagccactcc gataggaaag caaccgggag aagtagagct attcgagaag     11700
     aatccgggga tattagtgga aaatctgggg caggcccaat cagttgcgtc tacttggaaa     11760
     atcatatggt atgtagattg ggatcaaaga atcagagaaa cggatgcatt tgcgagagca     11820
     agcaagcagg tggaatggaa atgcagagta acaataagca aagaagacgc ctgcagaaat     11880
     cgcataagaa tggctactca caagaccata aaagcgctgc aaggtgtcga aacagcgtac     11940
     agggcagtag tagggcagga agttcgcagc caagtagaga cagtacaggt actccagggg     12000
     cagatatcgg aatctaacaa ggacaagata cgggagttga cggaattaaa tttgacaagt     12060
     acgaccgata taacgaaata tctcaaagaa caaataagag tctcagcgtt cggtgatcac     12120
     gaacaaacac tgcaaataat aaaaaaatat gaggataaag caggagatgt taaagaagaa     12180
     gggcttaaaa tatttacaga ttgggtaagc ggatatgata gaatgccaga gataattcaa     12240
     gaattcgagc agctggccga taaactagca gcgaaatttg aaacagcaac ggatataatt     12300
     tatttggcaa gtcgaggaat atcgcatcta ccggaagcag ccttaaaaac gatatcggag     12360
     gcagaaatac tagtaagtca gttcaggcca gatctcaggg ttccgggaga tgagggcaca     12420
     acgacagagg aaagagtagg gaaaatagca gaaatagcga cggtagcact taataggaaa     12480
     gtaatatatc acattgaaat accgttggta acgcaggaag aattagacct gcttagaata     12540
     acgccgctac ccgtagagca agaagggttt aacataacaa acatggtggc atacctacaa     12600
     ccgacgtacg aatatatagt aagtagcatg agcgaaaaaa ggttcgctcc gatatcccga     12660
     caagcggtcg accaatgtaa aaaattaggc cagataaaca tatgcgcaca aatagaaccg     12720
     acgcaagaag tggagaaaga tcacccatgc gagatacgac ttatcctagg agaaacaata     12780
     gacaacccgg aggagtgtcc gatcgtctta gcaaaattaa agggggcgta ctggactcga     12840
     ctccacgcaa aaaatcagca cgcgttcagc actagaaggg aagaaaaggt acatgttcaa     12900
     tgcgagcaca ccaaacacgg gacgataaag gtgtcccacg ctggagtagt agacttggca     12960
     aaagactgta ctgcccaagc gtcaggaacc agacttgaac cgggtcagga ggaaggtgag     13020
     agtcacgtcg ttaatctgga gggcccaact ctgaacttga aaaagattat acaagagatg     13080
     aaaggaacaa aaggagacga gttgctgaac ctaataaaaa tagtaataga aagagacgga     13140
     ctgcaggagc tcggtagcca agaacacggt cccgaagata aattaacgat cggtactaaa     13200
     ctagaggaca tagttcaaag ggtacgtgaa gtaggtcaaa cggaaggaaa attttccaac     13260
     tgggaagggt acgcgtggat ggctgcagaa atagctttag gcacggcagc ggggtcgttc     13320
     gggttcctaa aatggggggg ccccttaata ctaaatttgg ctagaatgct tacaggtaga     13380
     agaaaccgtt ccggaagcga aggcgcagcg gtgggtgcag tgacagcgca accaataatg     13440
     ctacagacca tacaaagacc agtcgcgtcg caaaaccaag tacgcgtagc ggtcagaagt     13500
     gcacctccga cagctgacaa aatgaaacgt cctcgtgcat aagaggatat atatataaaa     13560
     aaaaaggaaa aaattttaat caaattttgt atacatacat aaatctaggt tacgtttgtt     13620
     tattataatt tagttaccat atttacgaac aaaaatgcat tatgtgaaaa tatctaacag     13680
     gctcgtagcg cagccaactg taacaataac acgaatcaaa aacattaaaa gaatgatcga     13740
     atcaacagta ggaaaataag taatattata cgatacatta taacatactg taatgccata     13800
     ttttacaagt ttaacatgaa taacttacag taggattaaa taattagtta ataattagta     13860
     gaaataactt gaagattatt acactctatg aatttataaa taagaatttt gcaataatgc     13920
     actatattat agagggagaa gagcgtgaac aaaaacaata aatgtttaca caaaaagaac     13980
     aatttagcga atttgtgtaa aggaggaaca aggacaggac tttttttctc tccacctttt     14040
     tactcctata ataggaatct cacatacaac acaaacaaca ttacacgaaa attactctaa     14100
     cacaaacata caaactaaaa aggaaatcgc catcgaggac katagcggcg cggcctcgga     14160
     cg                                                                    14162
//
ID   Gypsy-10_CoFl-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-261
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2304-2304 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 261 BP; 68 A; 67 C; 62 G; 64 T; 0 other;
     tgtcacgtac gatatcatag ctacacgtac gtgcgccccc tctttttggg gcctactaca        60
     gatgattgta gtgggagaga gcaaagcgat aagcagatag gatgctgaaa ggagcgctct       120
     ctctggctgg aaccgtcaag gacgaaggtc gtacacacgc gacgcgctct tctctcgttt       180
     ttgcattaat aaagacgttg atactagttc ctcgactatt tacttcgtgc gcaccccaag       240
     accatagaat cctacgcaac a                                                 261
//
ID   Gypsy-10_CQ-I repbase;    DNA;    INV; 3796 BP.
XX
AC   AAWU01008510;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_CQ_;
KW   Gypsy-10_CQ-LTR; Gypsy-10_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3796
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 399-399 (2011).
XX
DR   GenBank; AAWU01008510; Positions  121324  125119.
XX
CC   Positions [2511-2981] - Integrase core
CC   'CTTGC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..3773
FT                 /product="Gypsy-10_CQ-I_1p"
FT                 /translation="MAKGLSFRRFDEGDESREFPQSRSQRRRIFSEEETSS
FT                 AGEADRDTRCCNLGHLEEDCRVKNIRCWKCRADGHVRATCPTRRSHFPDCQ
FT                 LPGAQGASKAIYSAAGKLAVDKPMTLAVGIGGRCHVMQLDTGAAISAVSVA
FT                 YYGESLKDWKLQQSSLKLNGYGGERLHVRGVIEPTLSYGDSSKKVAFAVIE
FT                 NGGPPLLGRNFVRAFNLGVSSIYSMETDADNIVESMIKCHEELFSDGLGAY
FT                 RYATIKLEMEEDALPVFRKPRTVAYKFVDKVGAELDAMEKDGIISKCDRCS
FT                 WGTPLVPVIKGDGSIRLCGDYKTTVNLYVKDVIHPLPTVDEVFSKLNGGKR
FT                 FSKLDLSKCYNQFLLDEESREVCAISTTKGVYKMNRLPFGVRPASGIVQRV
FT                 LEQLLCGIPGVQNFLDDVLVTGRTDKEHLENLSRVFDVLEKAGLKLNRKKC
FT                 QFFKKEVTYLGHVINANGLCKTDERVKSIRMTKEPRNVQEVRAFAGLVNHY
FT                 SRFVKNIAEMMSPMYRLLRKGTKFVWSKECREAFTRVKEAICEDVMLAHFD
FT                 PGAKLLLVCDASMEGVGAVLMQKVGSEPERPVAFASRVLHAAERNYSVLDR
FT                 EGLAIMFGLNKFFHYLVGNIFTVRTDHKPLISILNPRKGIPAIAASRMQRW
FT                 ANFLGGFSYRIEHVSSEGNIADYPSRAPFESWTLWKEDDTYLNFINTSSTK
FT                 VLDDDVVRVELADDPELAMLKDCLLKGKVGGDLQRGPYGKVFNELSLENGL
FT                 IMRGVRVLVPGTLRKAVLEQAHRSHLGVGKCKTVLRSFVWWPGIDKDLEVH
FT                 IKSCHACLVNRPSPEKAKLIPWEPPKSVWSRVHLDFAGPVKGWSFLIVVDA
FT                 LSKWVEVFPTQKCDTEFVLEKLVDCIARFGLMHEIVSDNGTQFTSARFKNF
FT                 LEANGIRQVLTSPGHPATNGQAENSVKTFKASLMKSFASGSTDVKEIVANF
FT                 LLGYRSAAHCSTGSSPAQLMLGRQPRSTLDLLRNNNRCVASEQETKAREVV
FT                 LARQSKQVDNYKGKREEQFNLNERVMVRDYTNPNKAAWTRAVVTGIVGKRN
FT                 YVVKLSSTGRELKRHLDQMIADTTASTAGGGKSGQKTAPLRQREQQPDRVT
FT                 VYRTMPKRVVELPSASDVAEVDPVPVDEFRPEVPTDSDLPEGDQETPTEEN
FT                 AAQADSGLPEGDQSQPETPSVEVATEPNSDPAEGATSEDDDDDNFEDPQTD
FT                 VTKSDDSDAGLEFAGFDRGKWKFRDYLGRLLRK"
XX
SQ   Sequence 3796 BP; 967 A; 858 C; 1173 G; 798 T; 0 other;
     ttggcgacga gtttaaatcg gatttacgcg attagagtcg ggagatggcg aaagggcttt        60
     ctttccgacg gttcgacgaa ggggacgagt cgcgggagtt tccgcagagc aggagtcaga       120
     gacgacggat tttctccgaa gaggagacgt caagcgccgg agaggcggat cgtgacacac       180
     ggtgctgcaa tctgggacat ttggaggagg actgccgggt caagaatatc cggtgctgga       240
     agtgccgtgc agatgggcat gtgcgagcta cgtgcccgac aaggcggagc cacttcccgg       300
     actgtcagtt gcccggggcg cagggtgctt cgaaagcaat ctactctgcg gcgggaaagc       360
     ttgcggtgga caaaccgatg acgctagcag taggaatcgg cggccgatgc cacgtcatgc       420
     agttggatac gggcgcggcc atatcggcgg tatccgtagc atattacggc gagagcttga       480
     aggattggaa attacaacag tcgtcgctga agttgaatgg ctacggcggg gagcggctgc       540
     acgtgagagg agtgattgaa ccaaccctgt cctacggtga ttccagcaaa aaagtggcct       600
     tcgcggttat agaaaacgga ggcccgccgt tgttgggaag gaatttcgta cgcgctttca       660
     acctcggcgt ttcttcaatc tactcgatgg agacggatgc ggataacatc gttgaatcga       720
     tgatcaagtg tcacgaagag ctgtttagtg acggcctggg tgcgtacagg tacgccacca       780
     ttaagctgga gatggaggag gacgcgctgc cggttttcag gaagccaagg acggtggcgt       840
     acaagttcgt ggacaaggtt ggggcggagt tggatgctat ggaaaaggac ggcataatat       900
     cgaagtgcga ccgttgcagt tggggtaccc cgctagttcc agtgatcaaa ggcgacggaa       960
     gtatacggtt gtgcggagac tacaagacca cggtgaacct gtacgtgaag gacgtcatcc      1020
     atcccttacc gacagtagac gaggtcttca gcaagcttaa cggtggcaag agattcagca      1080
     agctagacct gtccaagtgt tacaaccagt tcttgctgga tgaggaatct cgagaggtct      1140
     gcgctatttc tacgacgaaa ggagtctaca aaatgaaccg gcttccattc ggcgtgcgcc      1200
     ctgcttccgg aattgtgcag cgagtgttgg agcagttgct ttgcggcatt cccggcgtgc      1260
     agaatttctt ggatgatgta ctggtcacgg gaagaaccga caaggagcat ctggagaact      1320
     tgtcgagggt gtttgacgtg ctggaaaaag caggtttgaa gttgaaccgt aagaagtgtc      1380
     agttttttaa aaaggaagtg acatacctgg gacacgttat caacgccaac ggactgtgca      1440
     agactgacga gcgagtgaaa tcgatccgga tgaccaaaga accaaggaat gtccaagaag      1500
     ttcgagcttt tgcaggactg gtcaaccatt attctcgttt cgtcaagaac atcgccgaga      1560
     tgatgagccc catgtaccga ctgctgagga aaggaaccaa gttcgtgtgg tccaaggagt      1620
     gccgggaagc attcacgagg gtaaaggagg cgatttgtga ggacgtcatg ttggcacact      1680
     ttgacccggg tgccaagctt ctcctcgttt gtgatgcgtc catggaaggt gttggtgctg      1740
     ttctgatgca aaaggttgga agtgagccgg aaagaccggt ggcgtttgca tcgcgagtgc      1800
     tgcacgcagc ggagcggaac tacagcgttt tggatcgtga ggggttggcg attatgtttg      1860
     gactgaacaa gtttttccat tacctggtgg ggaacatctt cacggtccgt accgaccata      1920
     aaccgctgat ttcgatccta aacccacgaa aaggcatacc cgcgattgca gcaagccgca      1980
     tgcagcgatg ggcgaacttc ctggggggtt tcagctatcg catcgagcac gtcagctccg      2040
     agggaaacat tgcggactat ccctcacgag ccccgttcga atcttggacc ttgtggaaag      2100
     aggatgacac gtacctcaac ttcataaaca ccagcagtac caaagtgctt gacgacgatg      2160
     ttgtccgcgt cgaactggcc gatgatccgg agttggcgat gctgaaagat tgcctactta      2220
     agggcaaggt gggtggtgac ttgcaacgtg gcccgtacgg aaaagtcttc aacgaactgt      2280
     cgctggaaaa cggactaata atgcgaggag ttcgagtgct ggtgcccgga acgctgagga      2340
     aagcagtatt ggagcaagcc caccgttcac atctcggagt tggaaagtgc aagacggtac      2400
     tgcgaagctt tgtttggtgg cccggaatcg acaaagatct ggaggtacac attaagagct      2460
     gccatgcctg cctggtgaac cggccgtctc cggagaaagc caaattgatt ccgtgggaac      2520
     caccaaagtc tgtctggagc agagttcatc tcgatttcgc gggcccggtg aaaggttgga      2580
     gtttcctgat cgtcgtggat gccttgtcta agtgggtgga agtgttcccg acgcagaagt      2640
     gcgataccga attcgtcctg gaaaagctgg tagactgtat cgctcggttt ggcctgatgc      2700
     acgagattgt tagtgataac ggcacacaat ttacttctgc gaggttcaaa aatttcctcg      2760
     aagcgaacgg catccggcag gttctgacaa gtccagggca tccagctacg aacggccagg      2820
     cggaaaactc tgtgaaaacg ttcaaggcct ctttgatgaa gtcgttcgca agtggatcca      2880
     ccgacgtcaa ggaaatcgtg gccaatttct tgttgggata cagatctgcg gcacattgct      2940
     caacgggatc ttcaccggcc caactgatgc ttgggagaca gccacgttcg acgttggatt      3000
     tgctgaggaa caacaatcgt tgcgttgcga gcgaacaaga aacgaaggcc agagaagttg      3060
     tcctcgcacg gcaatccaag caggttgaca actacaaggg caagcgagag gagcaattca      3120
     atcttaacga acgagtcatg gtacgagact acacaaaccc taacaaggcc gcatggacac      3180
     gggcagtcgt aactgggatt gtgggaaagc gcaactacgt agttaaactc agctctacgg      3240
     gtcgagaact caagcggcac ttggaccaga tgattgcaga caccacggct tctacggcgg      3300
     gaggtggtaa gagtggtcag aagactgctc ctttacgtca gcgggaacag cagcctgatc      3360
     gagttacggt ttaccggacg atgcccaaga gagtggtgga gctgccgagt gccagcgacg      3420
     tagctgaggt cgatccagtc ccggttgatg agtttcgacc ggaagtgcct acggacagtg      3480
     atctaccaga gggtgaccag gaaacaccga cggaggaaaa cgctgcgcag gcggacagtg      3540
     gccttccaga gggtgaccag tctcaaccgg agacgcccag tgtggaagtc gctacagaac      3600
     cgaacagtga tccagcagaa ggagcaactt ccgaagatga cgacgatgac aacttcgagg      3660
     atccacaaac agatgtaact aaaagtgacg atagcgatgc aggacttgag tttgcggggt      3720
     ttgatagggg gaagtggaaa ttccgcgatt atttgggtag attactcaga aagtgaagct      3780
     tagcttagtg cgggga                                                      3796
//
ID   Gypsy-10_CQ-LTR repbase;    DNA;    INV; 139 BP.
XX
AC   AAWU01008510;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_CQ_;
KW   Gypsy-10_CQ-I; Gypsy-10_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-139
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 400-400 (2011).
XX
DR   GenBank; AAWU01008510; Positions  121185  121323.
XX
SQ   Sequence 139 BP; 41 A; 26 C; 33 G; 39 T; 0 other;
     tgtgacgtag gtgcattgag cagcccctcg tatctgtcag tgtgggcgaa tgacatagca        60
     tttctagatc gcgcgagcaa acgacacgct ttgcaataaa atgggaaagt taattaaaac       120
     gttgttttaa tctattaca                                                    139
//
ID   Gypsy-10_DAn-I repbase;    DNA;    INV; 4409 BP.
XX
AC   AAPP01017699;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DAn_;
KW   Gypsy-10_DAn-LTR; Gypsy-10_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4409
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017699; Positions   24528   28936.
XX
CC   'GGTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..4408
FT                 /product="Gypsy-10_DAn-I_1p"
FT                 /translation="MGDTAIKPFLCEAMDKAILRNEWEKWLRSFTIYLEAE
FT                 GISDTRQKRSKILLLGGVQLQSVAYSLPGALIDPDDKGEIDIYAVLVERLG
FT                 KYFSPKQNSTFERHLFRSLTPSENGSFSDFVLQLRQQMSKCSFGSCKKEIE
FT                 DICLKDKIIDAWAPLELKKKFLGKEHSLDEVIEACQVEEQIDKASKAMTSR
FT                 PDVGPICKISNQKPGRRECPRCGKFGHTYNDPACPARKASCNKCSKIGHFA
FT                 KMCRTIIKERFSKFQRSSLKRPNSYIRCVGEEAASPKQRKEESPCFKISSD
FT                 EGEEHIKCHVGGRNIRLIIDSGSKFNLLSHADWSRLKREKATFFNERFKSE
FT                 EQFRGYASDKLLQVICIFEAPISVEPGAEIFATFYVIENGRQSLLGRDTAV
FT                 ELKVLRLGRNINQIKEIVPFPKWKGIEVKLSIDDTVRPVQQPLRRIPVALE
FT                 DRVMEKLNEALSRDIIEPVTAPSSWISPIVLAFKENGDIRVCVDMRQANRA
FT                 ILRENYPLPTFDSFMTRLKKAKFFARLDLKDAYHQLALDKASREITTFITP
FT                 EGLFRYKRLMFGVNSAPEIFQRLLEQMLSKVPNALNFIDDIIIFGATKSET
FT                 DNTVKQVCQIFQENNVLLNKDKCVWNTDKLKFLGHILSAKGIEVDPEKIDT
FT                 IRSFRAPKNKEKTRSFLGLVTYVGKFIPDLAHHTDTLRKLLKTENKFTWGE
FT                 AERMAFSNLKDQLAEVPRLAYFNPKHRTRVIADASPVALGHVLLQFSDKGD
FT                 PLIISFASKALSEVETRYSQTEKESLALVWAVEKFYYYLAGLHFELVTDHK
FT                 PLEAIFKPTSKPPARIERWLLRLQSYKFTVIYKAGKENISDALSRLCQLST
FT                 AKEMDPKTEYSILRLVQSSVPKCLTISNMVEFSLRDEEIIDAISCLQNNSW
FT                 KPEASTNFYPFRNELSSIGSLLLRGNRIVVPTPLREQTLELAHEGHPGETA
FT                 MKRRLRSKVWWPQMDRAVEKFVKACRDCCLVSQAPRPPPMDRHLFPTGPWI
FT                 WVASDLLGPLPNGEYILVFIDYFSNGKNYKEEIQSFVLMYNVTPHGTTGVA
FT                 PTKLMFNRVIRDKIPGIEEIEEQYLDSAEMDRDLVEKHKGKQATDKRRGAR
FT                 ESDIKVGDKVFQKNVVFPNKLTPTFDNTEYTVVEKHRNIVEIERDGRKLTR
FT                 NVGHLKKVPEMAARPKPPQTPEGGASPITFPADAASQDLNLTSRIRRPDQA
FT                 PQPPLKLKLVNKGG"
XX
SQ   Sequence 4409 BP; 1479 A; 924 C; 1028 G; 978 T; 0 other;
     gtggcgacga gtgattaaaa aaaaaaacaa aaaaaaaaaa gacaaaaaaa aaagattcga        60
     caaagtaaag ttgcattgaa aaaaagtggt tgtctataca cgtgcaatgc tcaatgggct       120
     aggaaacaat ctatgcatat aaataaaaat atatataaat gagctaaact atctaatgaa       180
     atctaactaa tcctcttatt tgatatatgt atgtacaaca aaaaaaaata aaaagaagaa       240
     gaaagatcag aaaataatga tgtgaaaggc gttccgaaac taacggtagt taagttttgc       300
     gcagagccca aaatgaacaa acacacaaac tcatatatgt atatacgcat atgtatgcag       360
     tgaaaacacg aaaaaaaaag agcactgaaa attagctgcg taaagagaat actcttgaga       420
     aacgcaaggc cgagtacaga ttgcaagttt ttttttaaaa aaaaaaaaaa aaaaaaagct       480
     gggcaaagag tgcaagccaa atcactatag agaaacgacc ggaaaaagtc gagagctgag       540
     tacagattgc aagctttcga aacgggaagc tgagtaaaga gtacaagcca ataaataatt       600
     gcaataggca aacggaatag aacgtttgtc tataggaaaa aataataata ataatataaa       660
     aaaaaaatta cttttaaaga tttaaaaaaa aaaaagaaaa aaaattttcc tttcttcttt       720
     ccagattgcg tctaaaatgg gagacacggc cattaagcct tttttgtgcg aggcgatgga       780
     taaagcgatc ctcaggaacg aatgggaaaa gtggctgagg tctttcacaa tatatctcga       840
     ggcggagggg attagtgaca caaggcaaaa gaggagcaaa atccttctct tgggaggtgt       900
     ccagctgcag tcggtggcgt actccttacc gggcgccctt attgacccgg acgataaagg       960
     ggagatcgac atctacgcgg ttctggtcga aaggctgggg aaatacttct cgcccaagca      1020
     aaactcaacg tttgagaggc acttgttcag aagcctaaca ccctctgaaa atggaagttt      1080
     ctcggacttc gtactacaac tgcgtcaaca aatgagtaaa tgttctttcg gctcctgtaa      1140
     aaaggaaatt gaagacatct gccttaagga taagatcata gacgcctggg caccgttgga      1200
     gttaaagaaa aagttcctgg gaaaggagca ttcactggat gaagtgatcg aagcatgcca      1260
     ggtggaggag cagattgata aggcgtcgaa agcgatgaca tcaaggcctg atgttggccc      1320
     catttgtaaa atctcaaatc aaaagccagg ccgaagggaa tgcccgagat gtggtaaatt      1380
     tggacatacc tacaacgacc cagcatgtcc tgccagaaaa gcatcttgca ataaatgctc      1440
     gaaaataggt cattttgcta agatgtgccg aactattata aaggagcgat tttcgaagtt      1500
     ccagcggagc agcttaaaaa ggccaaactc ctacatacgc tgtgtgggag aggaggcggc      1560
     gagcccgaaa caaaggaaag aggaatcgcc atgtttcaaa atatctagtg atgaggggga      1620
     ggaacacata aaatgccatg taggcggccg gaacatccga ctgatcattg actcaggttc      1680
     caagtttaat cttctcagtc acgcagactg gtcccgattg aaaagagaaa aagcaacgtt      1740
     tttcaacgag cgattcaagt ccgaagaaca gttccgagga tacgcctctg ataaattgct      1800
     acaagtaatc tgtatttttg aggccccaat atcagtggaa ccaggggctg aaatatttgc      1860
     tacattttac gtaatcgaaa atggaagaca atccttactg ggcagagaca ctgcagtgga      1920
     gctaaaagtc cttcggttgg gaaggaacat taaccaaata aaagaaatag taccatttcc      1980
     aaaatggaag ggcatagagg tgaagctgtc aatagacgat actgtgagac cagtccagca      2040
     gcctctgaga cgaattcccg tggcacttga ggatagggtt atggaaaaac tgaatgaagc      2100
     ccttagtcgc gacataattg agccagttac tgccccgagc tcctggatat ctccaatcgt      2160
     tctcgcattt aaggagaatg gggacatccg tgtttgtgtt gacatgcgac aggcaaatag      2220
     agccatttta agggagaact accctctacc cacattcgat tcattcatga ccaggcttaa      2280
     aaaagccaag tttttcgccc gcctggattt gaaggacgca tatcatcaac tggccctaga      2340
     caaagcgagc agggagatca caacgtttat aaccccggaa ggcctcttcc gctacaaacg      2400
     gttgatgttc ggagtgaact cagcacccga aattttccaa cgtctcctgg aacaaatgct      2460
     atccaaagta ccaaacgctt tgaacttcat agacgacatc atcatctttg gagccaccaa      2520
     atctgagacc gacaacacag taaagcaagt gtgccagatc ttccaggaaa ataatgtcct      2580
     gttaaataag gacaaatgcg tttggaatac ggataagctc aagttcctgg gtcatatcct      2640
     atccgcaaag gggatagaag ttgaccccga gaaaatcgat accatacgtt cctttagagc      2700
     ccccaagaac aaagagaaaa cgcgaagttt tctcggtctg gtaacctatg tggggaaatt      2760
     catcccagat ctggcacacc atacggatac cttaaggaaa ttgctcaaga ccgaaaataa      2820
     attcacatgg ggcgaagcgg agaggatggc tttcagcaac ttaaaggatc agctagctga      2880
     ggtacctagg ctggcatatt ttaatcctaa acatagaact cgggtaattg cagacgccag      2940
     tcccgtagcc cttggccatg ttctgttgca gttctccgat aaaggtgacc cgctaataat      3000
     ttcttttgct agcaaggcgt tgtcggaggt ggaaacgcgt tactcacaaa cggagaagga      3060
     aagtcttgcc ctggtttggg ctgtggaaaa attctattac tacctggccg gactgcattt      3120
     cgaactggtg acggaccaca agcccctgga agcaatcttt aagccaactt caaagccccc      3180
     agctcgcatc gaaaggtggc ttttgcggct gcagtcatac aagttcaccg ttatctacaa      3240
     agctgggaaa gaaaacattt cggatgcgct ttcgcgactc tgccaactat ccacagcgaa      3300
     agaaatggat cccaaaacgg aatatagtat actacggctg gtgcagagct ccgtccctaa      3360
     gtgtttgacc atctcaaata tggttgagtt ttctttgagg gacgaagaaa tcatagacgc      3420
     gatcagctgc ctacagaaca actcctggaa accagaggca tcgacaaatt tctacccttt      3480
     ccggaatgag ctttcatcaa tcggttcgct gttactgagg ggaaaccgaa tagtagttcc      3540
     aacaccatta agagaacaaa cgctagaatt agcacatgag ggccatccgg gagagacagc      3600
     aatgaagcgc cgcctgaggt caaaggtgtg gtggccacaa atggaccgag ctgtggaaaa      3660
     atttgtcaaa gcctgtcggg attgttgcct agtatctcaa gcgcctcgcc caccccctat      3720
     ggacagacac ctttttccta ctgggccatg gatctgggta gcatccgacc ttttaggccc      3780
     tctacccaat ggcgaataca tcctggtctt catagactat ttttctaacg ggaagaacta      3840
     taaggaagaa attcagagtt tcgttcttat gtataacgtt actccgcatg gaacaacagg      3900
     ggtagctccc acgaagctga tgttcaatag agtcattcga gacaagatac cgggtattga      3960
     agagatagaa gagcagtatt tagactcagc cgaaatggat cgagacttgg tggaaaaaca      4020
     taaaggaaaa caagcgactg acaagagaag aggggcaaga gagagcgaca tcaaggtggg      4080
     tgacaaggtt ttccagaaga acgtggtgtt tccaaacaag ctcactccta ccttcgataa      4140
     tactgaatat accgtagtgg aaaagcacag gaatatagtt gaaatagagc gtgatggtag      4200
     aaagctaaca aggaatgtcg gacacctgaa gaaagttccc gaaatggctg ccaggcccaa      4260
     gccaccccaa acgcctgagg gaggcgctag tccaatcact tttccagcag atgcggcctc      4320
     ccaggacctc aacttaacca gccgaattcg acgaccggac caagcacccc agccaccctt      4380
     gaagttgaaa ctcgttaata aaggaggga                                        4409
//
ID   Gypsy-10_DAn-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   AAPP01017699;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DAn_;
KW   Gypsy-10_DAn-LTR; Gypsy-10_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-245
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017699; Positions   24283   24527.
XX
SQ   Sequence 245 BP; 81 A; 42 C; 80 G; 42 T; 0 other;
     tgtgggaacc ggcactggaa gagaaccaac gggatccagg cagcgacgcg ggaccggcag        60
     agaaagagag gaatgatcaa ccgggcggca ctcgagagtg aagcgacaac gagggaagac       120
     acgctgcggg ggaagtgacc gcggcgtagt attattataa tcggaagtga attaataaag       180
     aataagtatt ataaagtaaa cccaaagttg cctgctgatt tagggtaagg tagtgggtta       240
     ttaca                                                                   245
//
ID   Gypsy-10_DAzt-I repbase;    DNA;    INV; 4814 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4814
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 791-791 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..4050
FT                 /product="Gypsy-10_DAzt-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MQASAPAQNVGVTLPKFNPEGACDDAAQWCMTADIIL
FT                 AEQPLTGSGLIMALSNCMEGSASKWLTQVCYAGIQWEQFKQLFKQRYESEE
FT                 TSAAILSNLFQSRPSAGECYSVYASRMVTLLMSKWRKMEIEEIAVSTVLVH
FT                 MANIDSRLQRTVFTSNITTRSKLQTELMAFSFENKRNAGAMDSNGPDLKRT
FT                 RFSAVVCHFCKKPGHKMAHCRAKPRQSGSSFKGEMQPQKENVTCYRCGQRG
FT                 HFANKCLREPTAAKSGPIQQKIINQCFVSEPKGSMTQRGMIYPICFDSGAE
FT                 CSLIRECMGIKLSGKRINNIVMLKGIGNSGIYSTLQILSDVVINENAIEIL
FT                 FHTVQDKELQNDIIIGREILTQGFNVLLSCDKFEIIRSKEVNICTALEVPY
FT                 HPTNVNTDLIDKNRDQLIELLEQYSTAFINGTPCTTVGTGEMKIRLIDPNK
FT                 TVQRRPYRLAPEEKEIVRSQISELMKCNIIRPSCSPYASPILLVKKKNGSD
FT                 RLCVDYRELNLNTVSDKYPLPLIDDQIARLGGANYFTCLDMASGYHQIPIH
FT                 PDSIEYTAFVTPEGQYEFLKMPFGMKNAPSVFQRAVMNAIGILAHSYVIIY
FT                 MDDIMVVSPTVELGLERLRNVLDVVSKAGFLFNIKKCSFLKTAVQYLGYEV
FT                 SAGEIRPNPSKIMALSSLPPPRSVSSLRQFIGLASYFRKFVPRFSQMMKPL
FT                 YSLTSDKENFVWNAKLEEIRKNVITILTSEPVLVIFNPKYPIELHTDASSS
FT                 GYGAILLHKIDGSPHVVEYFSKTTSSAESRYHSYELETLAVVEAIKRFRHY
FT                 LLGREFVVYTDCNALKASRTKLELTPRVHRWWAYLQSFNFDIQYREGKRMA
FT                 HVDFLSRNPLQTKPDLITSKIPEKRVNLTEVSSDWLLAEQQLDADLLNIVT
FT                 KLNESELSDELTGTYELRKGVLFRKIQRNGRTRWLPVVPRAFRWSVINQVH
FT                 ESIMHLGWQKTLDKVYQYYWFDKMNKYVRKFVDNCITCRTVKGSSGKVQAE
FT                 LHSIPKVDIPWHTVHIDITGKLSGKSDLKEYLIVQIDGFTKFVYLFHTLKL
FT                 DTDSCVAAMKSSISLFGVPNRIIADQGRCFTSSRFSEFCVSQNIKLHLIAT
FT                 GASRANGQVERVMSVLKNLLTVVESGQRSWQDALGETQLALNCTVSRAAGV
FT                 SPLELLIGKEARPMGLVTPYDTEDQIDVESVRTQASKTMKESASYDKFRFD
FT                 KNKAAVCRHKVGDYVLLKSEERHQTKLDAKFKGPFLVLEVLEGDRYVLKSL
FT                 SSKRTYKYCHDDIRKMPEGRIPNELDCNEDELHLPKGPMVTECESSEKGKA
FT                 NNDENMLYLESAV"
XX
SQ   Sequence 4814 BP; 1442 A; 823 C; 1197 G; 1352 T; 0 other;
     tcagaagtgg gatctgtgcc tactcctaca ttatccgagg agcagtggcg tgtggtgcta        60
     gaattggcga aagttatgca ggcctcagcc cccgctcaga acgttggcgt cactttgccc       120
     aagtttaatc cggagggtgc ctgcgacgac gctgcgcaat ggtgtatgac tgctgatatc       180
     attctagcag agcagccgct aactggaagt ggactcatca tggcgctaag caattgtatg       240
     gagggcagtg cttcaaaatg gctaacccaa gtgtgttacg ctggcataca gtgggagcag       300
     ttcaagcaac ttttcaagca gcggtatgag agtgaggaga cgtcggccgc cattttgtcg       360
     aacctttttc aaagccgccc ctctgccggt gaatgctatt cagtatatgc aagccgtatg       420
     gtgactttgc tgatgtcaaa atggcggaag atggaaatag aagagatcgc agtatctaca       480
     gtgctggtgc atatggcgaa tattgacagt cgcctgcagc gaactgtttt cacttcgaac       540
     atcacgaccc gaagcaaact acagacggag ctgatggcgt tttcatttga gaacaaacgc       600
     aacgctggcg ccatggatag caatggacct gaccttaagc gaactagatt ttctgcagtg       660
     gtatgccatt tttgtaagaa gcctggacac aagatggcac actgccgagc taagccacgc       720
     cagagtggaa gcagtttcaa aggagagatg cagccgcaga aagagaatgt gacctgctac       780
     cggtgcggac aacgtggaca ttttgccaac aaatgtttaa gggagccgac tgctgccaaa       840
     tctggaccta tccaacagaa gattatcaat cagtgctttg tgtcagagcc gaagggaagt       900
     atgacacagc gaggtatgat ctatccgatt tgttttgatt cgggagctga atgttctctg       960
     attagagagt gtatgggtat caaattgtca gggaagcgca ttaataatat tgtaatgtta      1020
     aagggtattg gtaattcggg tatatatagt acattgcaaa ttctcagtga tgtcgttata      1080
     aatgaaaacg ctatcgaaat attattccat acagtgcagg acaaagagct acaaaacgat      1140
     atcataattg gccgcgaaat tctcacacaa ggttttaatg ttttactctc gtgtgataag      1200
     tttgaaatca taagatccaa agaagtcaat atatgtacag cacttgaagt gccataccac      1260
     cccactaatg ttaataccga tttaatcgat aagaatagag atcagttaat tgaattactt      1320
     gaacagtatt ctacggcttt tattaatgga acaccttgta ccactgtggg aactggtgaa      1380
     atgaaaataa gattaattga ccctaacaag acggtgcaga ggcgaccata tagattagcc      1440
     cctgaagaaa aagaaatagt tcggtcacag ataagtgagt taatgaaatg taacatcatt      1500
     cgacccagtt gttcaccgta tgccagtcct attttgctcg tgaaaaagaa gaatggttcg      1560
     gatcgactct gtgttgatta tagggaactc aacttaaata cagtatccga caaataccct      1620
     ttgccactta ttgatgacca gattgccaga ttgggtggtg ccaattattt tacatgtcta      1680
     gacatggcta gcggatatca tcaaatacct attcatccag attctataga gtatactgct      1740
     ttcgtaacgc ctgaagggca atatgagttt ttgaaaatgc cgttcggaat gaagaacgcc      1800
     ccttctgttt ttcagcgtgc agttatgaat gcgattggta ttcttgcgca ttcctacgtc      1860
     atcatttata tggacgatat catggtggtg tcacctacag ttgagctagg tttggagagg      1920
     ttgagaaatg ttttggatgt tgtgagtaag gccggattct tgttcaatat taaaaagtgt      1980
     agctttctga aaacggctgt acagtatttg ggatatgaag tgagtgccgg ggaaataagg      2040
     ccaaatccaa gtaagatcat ggcattgagc tctttgccgc caccaagatc agttagtagt      2100
     ttgagacaat tcattgggtt ggcttcatac tttcggaagt ttgtgcccag attttcacag      2160
     atgatgaaac cactttattc gctaacatcg gataaggaaa actttgtttg gaacgcaaag      2220
     ttagaagaga ttagaaagaa tgttatcacc atcctcacta gtgagccagt tctcgttatc      2280
     ttcaacccaa aatatccaat agaattgcat accgatgcta gttccagtgg gtatggagct      2340
     atactgctac ataaaatcga tggtagtcct catgtggtgg aatactttag taagacaacc      2400
     tcctccgctg aatcaagata tcattcttat gaactagaaa cgttagctgt agtggaagct      2460
     ataaagcgtt tccgtcacta tctgttgggc cgtgagtttg tggtttatac cgattgtaat      2520
     gccttaaagg cttctcgcac taaattggaa ttgactcctc gagtgcatcg ctggtgggcc      2580
     tatctgcagt cttttaactt tgacattcag tatcgggaag ggaaacgtat ggctcacgtt      2640
     gatttcctgt caaggaatcc tttgcaaacc aaaccagatc taataacaag caagatccct      2700
     gaaaagagag tgaatttgac ggaggtatcc agcgactggt tgttggctga gcagcaactt      2760
     gatgcggatt tgttaaacat tgttactaaa ctcaatgaaa gcgagctttc ggatgagttg      2820
     acgggaacgt acgagttgag aaagggtgta ttgtttcgga aaattcaaag gaatggtaga      2880
     actcgttggc tgccagtggt accccgagcg tttagatggt cagtaatcaa ccaggtccat      2940
     gaatcgatta tgcatttagg gtggcagaag acacttgata aagtttatca gtattattgg      3000
     tttgacaaaa tgaacaagta tgttcgaaaa ttcgttgata attgtatcac ttgcaggact      3060
     gtaaaaggtt cctcggggaa agttcaggca gagctccatt cgattccaaa agtagatata      3120
     ccttggcata cagtacatat tgacatcact ggaaagctga gtggtaaaag cgatttaaag      3180
     gagtatctta ttgtgcagat tgacggtttc actaagtttg tttatttgtt tcataccctc      3240
     aagttagata ctgatagttg tgtggcagcc atgaagtcat ccatttcatt gtttggagtc      3300
     ccgaatcgaa tcattgccga tcaaggtaga tgttttacta gctcaaggtt ttctgagttt      3360
     tgtgtgtctc aaaatattaa gcttcatttg attgctacgg gtgcgagtcg tgctaacggt      3420
     caagttgagc gcgttatgag cgtactgaaa aacttgttaa ctgtggtgga atcaggtcaa      3480
     agatcttggc aggacgctct gggagaaaca caattggctc taaattgtac agtaagccgt      3540
     gcagctggag tgagtccttt agagctccta atcggcaaag aggctcgtcc tatgggtttg      3600
     gttacaccat atgatactga agatcagatt gatgtggaga gtgtgagaac tcaagcatcc      3660
     aaaactatga aggagtcggc cagttatgac aagttccgat ttgataagaa taaggcagca      3720
     gtttgcagac ataaagtagg cgattatgtt ttattgaaga gtgaagaaag gcatcagact      3780
     aagttggatg caaagtttaa aggtccgttt ctcgtattgg aggtacttga aggagatcgt      3840
     tatgttctga aatcgctaag tagtaagcga acatataagt attgtcacga cgatattcgt      3900
     aaaatgccag aggggcgtat tcccaatgaa ctagactgta atgaagatga gttgcatctg      3960
     cccaagggtc caatggtgac tgaatgtgag tcgtcggaaa agggaaaagc gaataacgat      4020
     gaaaatatgt tgtatttgga gagtgccgtc tagttgagac gatgaaaata tgttgtattt      4080
     ggagagtgcc gtctagttga gacgatgaaa atatgttgta tttggagagt gccgtctagt      4140
     tgagacgatg aaaatatgtt gtatttggag agtgccgtct agttgagacg atgaaaatat      4200
     gttgtatttg gagagtgccg tctagttgag acgatgaaaa tatgttatgt ttggagagtg      4260
     ccgtctctgt gagacgatga aatgatgtta tatgaaaaga gttccgtcca ggtgggacga      4320
     agagtcagtt gcgactataa agagttccgt ccaggtggga cgaagagtca gttgcgacta      4380
     taaagagttc cgtccaggtg tgacgaagag tccaggtggg acttgaaaaa tgaatgatga      4440
     ttatctgtca gccatgaggt ctgaatttag tatcggtcaa gggtctataa gttagcaatt      4500
     gtggatttgt agtaacgttg ttttatgttc tggtaaagat aaaaatgtgg aatgtaagaa      4560
     acaggaagag tcggtgcgac tgtgagaaag aaaaagaaat gtaatttgta ttggataaga      4620
     actcacaaga gaataatgga atgaaaaatg aaaaggaaaa gagatgaata acgatttatg      4680
     ttctaatagt tttaatgata ttatcgtagc caataatttc taatgaataa agacaaactg      4740
     tattatgcca tacaaaatct atttattgct gcattgaaat gattacacga ggacgtgtaa      4800
     ggtcaggatg gccg                                                        4814
//
ID   Gypsy-10_DAzt-LTR repbase;    DNA;    INV; 477 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-477
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 814-814 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 477 BP; 116 A; 87 C; 128 G; 146 T; 0 other;
     tgtcgggtct tagaattgtt tgcggtgtat ttttggttat tctctgtcag cttgctcgct        60
     gagtcccttt tcatgtcttc tttgcacgtt accgttggtt atcggtcact gcttgtctcc       120
     taacttcaac gctccgtttc agacacgggc tgattcatgt ttgtattagt gttagagagg       180
     gagatgatgt gtaatgagga agggacggaa ttgagagaga ggcgcatgag cgtgttactc       240
     tgtaactggc ctgggtagat aatgagagag agataaattg agagaggctg tgtcgcagat       300
     aatgagaggc tgaaagtgct tgccttcgat tcttgctaca cacttagttt ttggaagttt       360
     gcccggtcag ttgagaacag agcaattcgg ctgttggtgc gtcatcagtg aacaaaaatc       420
     aagacaatga atacagaaaa tccagatggg aaccgcaatt cctcttttac ctcgaca          477
//
ID   Gypsy-10_DBp-I repbase;    DNA;    INV; 6791 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DBp-I.
XX
NM   Gypsy-10_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6791
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 671-671 (2012).
XX
RN   [2]
RP   1-6791
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2]: updated to ful-lengthed consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           607..1893
FT                 /product="Gypsy-10_DBp-I_1p"
FT                 /translation="MATGGSAPNFSAGSVATAGSLTVELINRLINAQLNEV
FT                 SRKVECLEGRLATDANTVEDYKVQTIDPAIKCDTTLEVVKSLPNFTGETTQ
FT                 YVGWREAAETAMSLYKIESEQYFIALTILRNKIMGAAHDALTNHGTVLNFK
FT                 AILSRLDFIYSDKRPIHVLESELSILRQGRMTITEYYNEVNKKMTLLINKT
FT                 IMTYGKDSVITKETNNSIRGNALRVFISGLNGSISETLFSLNPPDLPNALA
FT                 KVQELESNNFRAQFANRFNGFKNESKYRGNNLRFDQIRQNNNTTKMGNNFN
FT                 HNQNYNWPQKGNFWQNNNQNNNHKQQAIEPMDVDPPIQLQNKSNNNRQPSQ
FT                 NWQSNSNQGRYNNWQANDNQGRYNNNYHQNKNRSNFYNTNQNREQTQAQKR
FT                 ESDGTESQPANKVTRLNNINEDHFLDQTPTEECLI"
FT   CDS           1884..5315
FT                 /product="Gypsy-10_DBp-I_2p"
FT                 /translation="MPYLNRIDRKTKKQLKVLIDTGATACYIKRGIFENKN
FT                 ELPIYKKVTTVHGYSIIRYYHIINIFETKQLFYEIEGLESDILIGFNLLRK
FT                 IGAIINIDKGILEYNGKQEKLKYYDNEEKNEIRLIEENNILPLKEFIIKKY
FT                 FDDNGSENTDSLFVENSEKSLGVKNPENADVEISVNKNTNILGTKNPENAD
FT                 VEISVNKNKNILGIKNPENADVEISVNKNKNILGIKNPESADEVNTVKNQI
FT                 NNIGTDQLGGLREKIVHYIEKEHSKINMQIPFRTDIKGEINLIHDRPIYGK
FT                 QYPYALSVNDFVNSEIKRMLSEKIIRPSRSPYNSPLLVVPKKGENQDGSRK
FT                 LRLVIDYKKLNESTIPDRYPMQDPSVILSNLGKARYFSTIDLESGFHQILM
FT                 KESDVEKTAFSINNGKYEFLRMPFGLTNAPRIFQRAMDDILREQIGKTCHV
FT                 YMDDIIIFSNSIEQHYTDLNKIINILLRANMKISLEKSKFFKRETRFLGYM
FT                 VSYNVIKTDPEKIETIRKYPLPENIRELRSFLGFTGYYRKFVSNYAYIAKP
FT                 LTKYLGGHNGKISKRMSTKILIQLDEPAIKAFNELKENLIAQVELVQPDYN
FT                 KKFTLTTDASDVAIGAVLSQEGKPITFISKTLSKTEQAYATNKKELLAIVW
FT                 ALKNLRNYLYGVIGIEIQTDHQTLSYTISDKNPNVDMKGWYSFIQSFTPKI
FT                 TFKPGTTNVVADALSRIQINNITNSDIEQTDQSDSDQNTQHSAESSFENVI
FT                 QETRKPLNQFKQQLLLTTGRYTIHESLKIFDRTRHLIEYDTPENLITILRE
FT                 YLPPNITVGIHCTLEDLFQIQLPLKNNFTNTFLFTRIFLQDVENEEDKAII
FT                 IEETHSRAHRGLEENYKQISKLYYWPNCFKKLKEYIKNCVICNENKYNRHP
FT                 IKIPIGEAPIPSKEGENLHIDIYYAQGLTFITCIDAYSKFLVVKEIQNKLN
FT                 IENKVMELLQHFPQAKVIMTDNEPSFTSAQFKSFAQRCNLTLHYADPRHST
FT                 SNGQVERAHSTLTELARCIKEEFNLTDFSEIVIRAAQEYNQSIHSTTNQKP
FT                 FDVLYNKIEHDNIPELLKNTQEKMLETHNENRKEKEYHVGQVVYEKKHGER
FT                 NKLKTRYKKQIVKENLPNKIIINNRNRIIHKDNIKF"
FT   CDS           5360..6790
FT                 /product="Gypsy-10_DBp-I_3p"
FT                 /translation="MFYQVLILHLILLTKSEIIDYTSHEYLLFKDNKDVLT
FT                 YDSYADLFHVTNLSFYKEIINLESDNIKRDTNKRSQWEIKYDIKVIELILS
FT                 QLISTRSKRGINELGTVWKWLAGTPDHDDFITVQNKINELIENNNKQSIIN
FT                 SRLFKEIESLSDDFKKVFIDQDLPLRKHRLRLLTFDLQNLIDTITLAKIDV
FT                 FNTKILNNDDILEILKHEQKPVIIADLMDISSFKIALHKELLIIYIKYPII
FT                 KNRCEIYHARAISQIDGKLVLSNQVAKCENVFYEMSNFKNELFNNYCTLSN
FT                 KKTCFTRLLNGEKSTCKKIREKNKKIDIIQDGAILINGNNIVNNSHLNGSF
FT                 LITFNGTTKINNISYTNLENKILEYVTTNHFKNYEISDYILSNNSDLSLDN
FT                 INILNPFVKIKNTKISLTFILLILIIIYLILSLIIKYKNAILFVTKKHRPE
FT                 PEKSINQEIFLTELRDHLNEFHIESGRSILEG"
XX
SQ   Sequence 6791 BP; 2881 A; 1091 C; 1023 G; 1796 T; 0 other;
     ggcgcccaac tcaaggggcc gcgtcacata aagctccaaa aaatagttta atgaaaaata        60
     agttaaacat aaacggaact cgcgcggtca acaactcaac atttttagtg gaaaaattaa       120
     aacatccacc aaacgacact accaagtgac agtgatcgtt aacaataaag taaatggaaa       180
     ttaattaatg aaataatcca taaagagtga attaaaacaa aggtggaccg aaattttaaa       240
     ccaaacaatt acaagaacac aaaaactaaa aaaatcaacg cacaaaaaaa acaaacaaga       300
     acaacaaaaa caaataaaac gacaactcca acaagaaaaa ccagggaagg aaggcaggac       360
     attctctatc catttatcaa ctatcaacca ccaaccacac agaaggaaga ccccaacggg       420
     acaatatcgt gaggaattaa tttaaaataa taaaaaaatt aaagactata atttaagatc       480
     tgtgaatttg agaaaaataa tataagattt atatattgca aaaagtaaga ttcgcgattt       540
     aacaaaaaaa tataaagaat aattctggaa gatttgataa atagcttttg tgaactaaat       600
     ctaacaatgg caaccggagg ttcagcacca aatttttctg caggcagtgt agccacagcc       660
     ggcagtttaa cagtagaatt gataaacaga ttaataaacg ctcaattgaa tgaagttagc       720
     aggaaagtag aatgtttaga aggaaggcta gccacagatg caaacactgt ggaagattat       780
     aaagtacaaa caattgaccc agctataaaa tgcgatacaa cacttgaagt ggtaaaatcc       840
     ttaccaaatt tcacagggga aacaacacaa tatgtaggtt ggagggaagc tgcagaaact       900
     gcaatgagtc tctataaaat tgaaagtgaa caatatttta tcgccctaac aattttacga       960
     aataaaatta tgggagctgc ccatgatgct cttaccaatc atggcacagt tttaaacttt      1020
     aaagcaatct tatcccgatt ggactttata tatagtgaca aacgaccaat acatgttctc      1080
     gagtcagaac taagtatcct caggcaagga cgaatgacaa ttactgagta ctataacgaa      1140
     gtcaataaaa aaatgacctt actaataaac aaaaccataa tgacatacgg aaaggacagt      1200
     gtaattacca aagaaacaaa caattcaata aggggaaatg ctctacgagt atttatatcc      1260
     ggacttaatg gatctatttc agaaactctt ttctcattaa atccaccaga tttgcccaat      1320
     gctttggcaa aggtccaaga attagaatca aacaacttcc gtgctcaatt cgcaaatagg      1380
     tttaatggat ttaaaaatga aagtaaatat cggggaaaca acttacgatt tgatcaaata      1440
     cggcaaaata ataataccac taaaatggga aataatttta atcataacca aaattacaat      1500
     tggccacaaa agggaaattt ttggcaaaat aataatcaaa ataataatca taagcaacaa      1560
     gctatcgagc caatggatgt tgatccaccg attcaactcc agaataaatc taataacaat      1620
     cggcagccga gccaaaattg gcagtcaaat agtaaccagg gaagatataa taattggcag      1680
     gcaaacgata atcaaggtag atataataat aattatcatc aaaataaaaa tcgttcaaat      1740
     ttctataaca caaatcaaaa tagagagcaa actcaagctc aaaaaaggga atcagatgga      1800
     acagaaagtc agccagctaa taaagtaacc agattaaata atatcaatga agaccatttt      1860
     ttagaccaga cccctacaga ggaatgcctt atttaaatag gatagatcga aaaaccaaga      1920
     agcagctaaa agttttaata gatacaggag ccactgcttg ttacataaaa aggggaattt      1980
     ttgaaaataa aaacgagcta ccaatataca aaaaggtaac aacagttcat ggctactcaa      2040
     ttattaggta ttaccatatt ataaatatat ttgaaacaaa acaattattt tatgaaatcg      2100
     aaggtttaga atctgatatt ctaattggat tcaatttatt aagaaaaatt ggagctataa      2160
     taaatataga taagggaatc ttggaatata atgggaaaca ggagaagtta aaatattatg      2220
     ataatgagga gaaaaatgaa atacgtttaa ttgaagaaaa taatattctt ccgttaaaag      2280
     aatttattat aaaaaagtat tttgatgata atggtagcga aaacacagat tcattatttg      2340
     ttgaaaatag tgagaaaagc ttgggagtta aaaatcccga gaacgccgac gtagaaatat      2400
     ccgtcaacaa aaatacaaat atcttgggaa caaaaaatcc cgagaacgcc gacgtagaaa      2460
     tatccgtcaa taaaaataaa aatatcttgg gaattaaaaa tcctgagaac gccgacgtag      2520
     aaatatccgt caataaaaat aaaaatatct tgggaattaa aaatcctgag agtgccgacg      2580
     aagtaaatac cgtcaaaaat caaataaata atataggtac cgaccaatta ggcggattga      2640
     gggaaaagat agttcactat attgaaaagg agcattcaaa gataaatatg caaattcctt      2700
     ttagaacaga cataaagggg gaaataaatc ttatccacga taggccaata tacgggaagc      2760
     aatatccgta tgctctatct gtcaacgact tcgtgaatag cgaaatcaaa agaatgttat      2820
     cagaaaaaat aataaggcct agcagaagcc cttacaattc accacttctg gtagtcccaa      2880
     agaaaggaga gaatcaagac ggaagccgta aattaagact cgtcattgat tataaaaaat      2940
     taaatgaaag tactatacct gacaggtacc caatgcaaga cccatcagta attctatcaa      3000
     atttgggaaa agcaagatat ttttcaacaa tagatttaga gtcaggattt catcagatac      3060
     taatgaaaga atctgatgtc gaaaaaacag ccttttcaat aaataatgga aaatacgaat      3120
     ttttaagaat gccattcgga ttaacaaatg caccaagaat ctttcagaga gcaatggacg      3180
     atattctaag agaacaaata gggaaaacat gtcatgtcta tatggacgac attataatat      3240
     tctcaaactc aattgaacaa cactatacag atctaaacaa aattataaat atattattga      3300
     gggcaaacat gaaaatctct ttagaaaaat ctaagttttt caaacgcgaa acccgttttc      3360
     taggatacat ggtatcctat aacgtcatca agacagaccc agagaaaatt gaaaccatta      3420
     gaaaatatcc gcttccagaa aatattcggg aactaagaag tttcctaggt tttacgggct      3480
     attatagaaa atttgtttca aactacgcct acatagccaa acctctaaca aaatatcttg      3540
     gaggtcataa tggcaaaatc tcaaaaagaa tgtcaacaaa aatattgatt cagctggatg      3600
     aaccagcaat taaagctttt aacgagctga aagaaaatct cattgctcaa gtagaactag      3660
     ttcaaccgga ctataataaa aaatttacct tgaccaccga cgcttcagac gtcgcaattg      3720
     gtgcagtttt atctcaagaa ggaaaaccaa ttacttttat ttcaaaaacc ttgtctaaaa      3780
     cagaacaagc ttatgctact aataagaagg aacttttagc gatagtatgg gctcttaaaa      3840
     atctaagaaa ttacttatac ggagttattg gaattgaaat tcaaaccgac catcaaactt      3900
     tatcttacac aatttcggat aaaaatccca atgtagatat gaaaggatgg tattctttca      3960
     tacaaagttt tacaccgaaa ataacattta agcccggtac aacaaatgta gttgcagacg      4020
     cattatctcg aattcagata aataatatta ctaacagcga tatagaacaa acagaccagt      4080
     cagactcaga tcagaacaca cagcattcag ctgaaagtag ttttgaaaat gtaatacaag      4140
     agacccgtaa accgttaaat caatttaaac aacaactgtt attaacaacg gggaggtata      4200
     caatacatga gtcactgaaa atctttgaca ggacacgaca tttaattgaa tatgacacac      4260
     cagaaaattt aataactata ttaagagagt atcttccacc taacattacg gtaggaattc      4320
     attgtacctt agaggactta tttcaaattc aattaccatt aaaaaataat ttcacaaaca      4380
     cattcctttt tacaagaatc tttctacaag acgtggaaaa cgaggaagat aaagctataa      4440
     taatagaaga aacacacagc cgtgctcata gggggctaga agagaattac aaacagatca      4500
     gtaaattata ttattggcca aactgtttta aaaaattaaa agaatatatt aaaaattgcg      4560
     tgatttgtaa cgaaaataaa tataacaggc acccaataaa aattccaatt ggggaagccc      4620
     caattccaag taaagaagga gaaaatttac acattgacat atattacgcg caaggtctta      4680
     ctttcataac ttgtattgac gcttactcaa aatttctagt agtaaaagaa atccaaaata      4740
     aattaaatat cgaaaataaa gtaatggaac ttcttcaaca ttttccacaa gcaaaagtaa      4800
     taatgaccga taatgaaccg agctttacct cggcccaatt taaatctttc gcacaaaggt      4860
     gcaatttaac tttacattac gcagacccga ggcacagcac gtcaaacgga caggttgaaa      4920
     gggcacattc tacattaaca gaattagctc gatgcattaa agaagaattt aatttaactg      4980
     acttttccga aatagtaata agagccgctc aagaatataa tcagagcatt cattctacaa      5040
     cgaaccaaaa accttttgac gtactatata ataaaataga gcacgataac attcctgaac      5100
     ttttgaaaaa tactcaagag aaaatgttgg aaacacataa tgaaaacaga aaagaaaaag      5160
     aatatcatgt aggacaggta gtctatgaaa agaaacacgg ggaaagaaat aaacttaaaa      5220
     ccagatataa aaaacaaata gttaaggaaa atttacccaa caaaataata atcaacaata      5280
     gaaatagaat tattcacaaa gataatataa aattctaagt atttatatat catccttttt      5340
     ttctttcctt tcccagaaaa tgttttatca ggtgctcata ctacacctta ttttattaac      5400
     aaaatcagaa ataattgact atacaagtca cgaatatctt ctatttaagg acaataaaga      5460
     cgtattgacg tacgattcat acgcagattt attccatgta actaacttaa gcttttataa      5520
     agaaataata aatttggaat cagataatat taaaagggat actaataaaa ggtcacaatg      5580
     ggaaattaaa tatgacataa aagtaatcga actaatttta tcgcaattaa tatcaactag      5640
     atcaaaaaga gggataaatg agttaggcac cgtgtggaaa tggttagctg gaactccgga      5700
     ccatgatgat tttattacag ttcagaataa aattaatgaa ttaattgaaa acaataataa      5760
     gcagtctatt atcaattccc gattattcaa agaaatagaa tctctttccg atgattttaa      5820
     aaaagtattt attgatcaag atctaccact tcgaaaacat cgcttgcgat tattaacatt      5880
     tgatctgcaa aatttaattg acacaatcac tctagcaaaa atagacgttt ttaataccaa      5940
     aattttaaac aatgatgaca tcttggaaat attaaaacat gaacaaaaac cagtaattat      6000
     agctgattta atggacatct cttcttttaa aatcgcattg cataaagaac ttttaataat      6060
     ttatataaaa tacccaataa taaaaaacag atgtgaaata tatcacgcta gagcgatttc      6120
     ccaaatcgat ggaaaactag tattaagcaa tcaagtcgca aaatgcgaaa atgtttttta      6180
     cgaaatgtct aattttaaga acgaactttt taataattat tgcactctaa gtaacaaaaa      6240
     aacttgtttt acccgattat taaatggtga gaaatcaacc tgtaaaaaaa taagagaaaa      6300
     aaataaaaaa atagacatca tacaagatgg tgccattctt ataaatggga acaatattgt      6360
     taacaactcc catttaaacg gttcgttttt aataacattt aatggtacaa ctaaaattaa      6420
     taatatctca tataccaatt tggaaaataa aattcttgaa tacgtaacta cgaaccactt      6480
     caaaaattat gaaatatccg attacatatt atcaaataac tctgatcttt ctttagataa      6540
     tataaacatt ttaaaccctt tcgttaaaat taagaatact aaaatatcac ttacctttat      6600
     attattaatt ttaatcatta tatatttgat tctttcactt attataaaat acaaaaatgc      6660
     tatattattt gtaaccaaaa aacatcggcc tgaaccagaa aaatctatta accaagaaat      6720
     ttttttaaca gaattaagag atcatttaaa cgaatttcat attgaatcgg gacgatccat      6780
     tttagaaggg g                                                           6791
//
ID   Gypsy-10_DBp-LTR repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   04-JUN-2019 (Rel. 24.06, Created)
DT   23-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DBp-LTR.
XX
NM   Gypsy-10_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-586
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 19(6), 1062-1062 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. AG-CT termini.
XX
SQ   Sequence 586 BP; 190 A; 127 C; 80 G; 189 T; 0 other;
     agttatccaa cccctaaata caggccactt atggctttta taaacaatat tttcaatctc        60
     tgcatttgcc tttggcttga tctttggctc aattatccaa cccataaatc caggccactt       120
     atggctttcc acttatgaat tttataaaca atattttcaa actctgcatt tgccttcggc       180
     tttgtctttg gctctgaggt ccgatctcgg ttccccataa acaaatcaaa atcaaaagta       240
     aacatcagct tccctccgaa gcccaatcaa ttacgccttt tgcgtttcaa gtacccacca       300
     aattgcatcg atcagcttaa tcgaatttca caataagatg cgacagtttc atcttaagcc       360
     tctaatctaa acacaactga tggccgaggt tctttggatc agatttagaa ttaagaagtc       420
     agtcctattt tgaccgagac cgcgaacggt tgacaaaaat atttaagaaa aatcaaaagt       480
     gtcttgtaat ttttgcgttt aataaataaa ggtttaacac caagttgtga aattaaaaaa       540
     taaaattttc atttttttaa ttcaccgaac tacaaacaat ttaact                      586
//
ID   Gypsy-10_DEl-I repbase;    DNA;    INV; 4769 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DEl_;
KW   Gypsy-10_DEl-LTR; Gypsy-10_DEl-I.
XX
NM   Gypsy-10_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4769
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 528-528 (2012).
XX
RN   [2]
RP   1-4769
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           487..1320
FT                 /product="Gypsy-10_DEl-I_1p"
FT                 /translation="MGVIRSWGEEYDGTGNPEEFISRTEELAEAYGIDLDH
FT                 AAGAMVILLRGCALDWWHTHPNPMPSWSTFRKEFLEYYRPADHEEKAMESI
FT                 THRHQGENEPAKEYALELRKIMRFTTLTEEKKLEWVYRNSRVEFKRYAKRG
FT                 ECQTLAEYLRLAEEFEALQPHGHTAQQTTQQTPETRLGHQPPGSYWRPPRN
FT                 QWRPQETQPILNRGVTRSWDMSNRCSRCKAVGHIARGCNNQPRLFCWVCGQ
FT                 DGIRTIHCCRRNETTGNGRRPWDQSGHPGHTPHPQHQ"
FT   CDS           1272..4358
FT                 /product="Gypsy-10_DEl-I_2p"
FT                 /translation="MGSERAPRAHTTPATSIKFNGRRLLAQVIIGSTRIRG
FT                 AIDTGATRSFIGQELASRIARHGKRKQVIEAIRLADGTNRTVTEALEVPIQ
FT                 LGTQTNTTTLLVLDEVIGDLLLGIDFLEQCNATLECGGITAKIKKKKRNQR
FT                 RSKKHKRHGIGSLETGDLTDAQIQETLKRELEMMSQIKGVSHIASHKIFMK
FT                 HDRPIKQRYYPRNPAMQSIINKQVDELIAQNLIEPSHSAYSSPVVIVEKKN
FT                 KEWRLCIDYRQLNEHSERDAYPVPRMDHILNQLREAKYISTLDLKSGYWQI
FT                 PMDEDSKQYTAFTVPGRGLFQWKVMPFGLHTAPATFQRALDSVIGPEMEPF
FT                 AFAYLDDIVVIGRTKREHLEKLQEVMRRLRKANLKINTEKCHFFKEELKYL
FT                 GHVISARGIHTDPEKIAAILNMPSPQTTKQVHSFLGVASWYRRFVPNFTEL
FT                 AQPLYNLVKKGTKFKWTEETEEATKNLKKALTEAPVLACPDFEKTFVLQTD
FT                 ASNYGLGAVLTQEYENGEHVISYASRKLTKTEQNYSATEKECLAIHWGIQK
FT                 MRMYLEGYHFVVITDHQALKWLNSIESPSGRIARWALAMQPYSFEVRYRKG
FT                 KLNVVADALSRMLEEEIHGAEVEEDEWIKQKLLAIEKEPETWPDYALIEGK
FT                 LYRHLPSWAADEDTQPWKLCVAKNQRERVLRENHSEATAGHLGVRKTKHRV
FT                 MASYYWQGMHRDIQQYVRRCETCQRYKTSQQQAAGKMLTGIAKAPWETLCI
FT                 DFVGPLPRSSHGNNMLLVMFDKFSKWVELAAVRKATTEIVLKVLREQILTR
FT                 YGTPKKLISDNGVQFTSNKFKAQLQKWGIVHQLTAPYTPQENPAERANRTI
FT                 KTMIAQFSGTEHTRWDDWLPEIAMAINSSRSESTGYSPAYLLYGREIRLPG
FT                 SLYNETTPGSGMVKETIEARLQRMIETSKLAHRNMGKAAQDQARSYNLRKR
FT                 DWRPKVGDLVWERQHPLSKAAIGFAAKLAPKYEGPFKVTGFVSTVIATIRH
FT                 TATGKTHRAYINELKPVVENEVA"
XX
SQ   Sequence 4769 BP; 1724 A; 1159 C; 1159 G; 725 T; 2 other;
     gtggcgcccg agcaaattga acacaaaaag acagtatcct caaatagaaa caccaaagat        60
     cgtttaccct cttcctcaac acaacacaaa ataatacaat ggcagacaag ttaactcgag       120
     gctggataag caatgccaac aaagcccaac tggaagccta tctaatagaa ttcgaggtca       180
     aaccagaaac actgtgcgag gacatgcgaa gacaaatgtc agattttata aagaacggca       240
     accacggcga ggaaactatc aaacgccttt tagaactggc tcagaaacac gcaagaagcc       300
     catcaccagc acctaacgga acaggaaacc aaccgaaagg cattagtggg acaaccgaca       360
     cagaggaaca catcgaggaa aaacataaat acctgcaagt gccgaacccg acggagtttg       420
     tcgaaggaaa acctggacct aagcccacaa ggacagaagg aaataaagtg gccacgagtg       480
     gccacgatgg gagtaatacg aagctgggga gaagaatacg acggaactgg aaacccggaa       540
     gagttcatta gtagaacaga ggaattagca gaggcatacg gcatagatct agatcatgca       600
     gcaggagcaa tggtaatact tctcagaggc tgtgccttgg attggtggca cacccaccca       660
     aacccgatgc cgtcatggag caccttccgg aaagaattcc tagagtatta caggccagcg       720
     gatcatgagg agaaagctat ggaaagcatc acacatagac accagggcga gaacgagcca       780
     gcgaaggaat atgcgctaga actcaggaaa atcatgcgat tcactacgct cacagaagaa       840
     aaaaaactgg agtgggtgta ccgaaacagt cgagtggagt tcaagcgata tgccaaacgt       900
     ggagaatgcc aaaccctagc ggaatacctc cgactagccg aggaattcga ggcactacaa       960
     ccacatgggc acacagcaca gcagacaacg caacaaacac cggaaactcg cttgggacac      1020
     caaccaccag gaagttactg gagaccacca aggaaccagt ggagacccca agaaacacaa      1080
     ccaatactta acagaggcgt cacaagatct tgggacatga gcaatagatg ctcgcggtgc      1140
     aaagcagtgg gacacatagc acgcggatgc aataaccaac caagactgtt ttgctgggta      1200
     tgcggacagg atggaatacg aacaattcat tgctgccgca ggaatgaaac gacgggaaac      1260
     ggaagacgcc catgggatca gagcgggcac ccagggcaca caccacaccc gcaacatcaa      1320
     taaagttcaa cggtcgacgt ctactagcac aagtcatcat aggcagcaca agaattcgcg      1380
     gtgcaattga cacaggagcc acacggagtt ttatcggcca agaactagcc agcagaatag      1440
     ccagacatgg aaaaagaaaa caagtaattg aagccataag acttgcagac ggaacaaaca      1500
     gaacggtcac agaggcacta gaagtaccaa tacaactcgg gacacaaaca aacacaacaa      1560
     cactattagt cctcgacgag gtgatcggag acctactctt gggaatagac ttcttagaac      1620
     aatgcaacgc tacactagaa tgcggaggca tcacagcgaa aattaaaaag aagaagagga      1680
     accaacgcag aagcaagaaa cacaagagac acggcatcgg atcactagaa acaggggatt      1740
     taacagacgc acagatccaa gagaccctca aaagggagtt agagatgatg agccaaatca      1800
     aaggagtaag tcacattgca agccacaaaa tcttcatgaa gcacgaccgc ccaattaaac      1860
     agaggtacta ccctcgaaac ccagcaatgc agtcaataat aaacaaacaa gtcgacgaac      1920
     tcatagcaca gaacctcata gaaccctcgc actccgccta cagttcgcca gtggtaatcg      1980
     tggagaagaa aaacaaggaa tggaggcttt gcatagacta taggcaactg aacgagcact      2040
     ctgagcgaga cgcataccca gtaccacgaa tggatcacat tctcaaccaa ctccgcgagg      2100
     caaaatacat aagcacactg gatctgaaaa gtggctactg gcagataccg atggacgaag      2160
     acagtaaaca gtacactgcc tttacggtac caggacgcgg actgtttcag tggaaagtaa      2220
     tgcccttcgg attacacaca gcaccagcga cgttccaaag agcgctagac tcagtcatcg      2280
     gaccagagat ggaaccattc gcgttcgcat acctggatga catagtggta atcggacgca      2340
     cgaaacggga acacctggag aagctacagg aggtaatgag gcgactccgc aaggcaaatc      2400
     taaagatcaa cacagagaaa tgccacttct ttaaggaaga actgaaatac ctaggacacg      2460
     taatcagcgc aagaggtata cacaccgatc cagaaaagat agccgcgatc ctcaacatgc      2520
     caagcccaca gacaacgaag caagtacaca gcttcctagg ggtggcctcc tggtacagaa      2580
     gattcgtccc gaacttcact gaactagcgc aaccgctgta caacctggtc aagaagggga      2640
     caaagttcaa atggaccgag gagacagaag aggcgaccaa aaacctaaag aaagccctaa      2700
     ccgaagcacc ggtcctggct tgtccggact ttgaaaaaac ctttgtactt cagacggacg      2760
     ccagtaatta cggactagga gcagtactga cccaagagta cgaaaacgga gaacacgtta      2820
     tttcatatgc cagtcggaag ctgacaaaaa cagaacaaaa ctactcggct accgaaaaag      2880
     agtgcctggc aatacactgg ggcatccaga aaatgaggat gtacctggaa gggtaccact      2940
     tcgtcgttat cacggaccac caagcactta aatggcttaa ctcgatcgag agcccttcag      3000
     gacggattgc cagatgggca ttggcaatgc agccatactc attcgaggta cgctatcgca      3060
     aaggcaagct taacgtcgtg gcagacgcat tatcccgaat gctcgaggaa gaaatacacg      3120
     gagccgaagt agaggaggac gagtggataa aacagaaact ccttgcaata gaaaaagaac      3180
     cagaaacatg gccagattac gcattaatag aaggaaaact atacagacat ctaccgtcat      3240
     gggccgcaga cgaggataca caaccgtgga agctatgcgt ggcaaagaac caaagagaac      3300
     gagtgctacg agaaaaccac agcgaagcta cagcaggcca cctaggggtt agaaaaacga      3360
     agcatcgggt aatggcatcg tactactggc aagggatgca cagagacata caacagtacg      3420
     tacgtcgctg tgaaacatgc caacggtaca agacctcaca gcagcaggca gcagggaaaa      3480
     tgctaacagg aatagcaaaa gcaccctggg aaacactctg catagacttc gttggtccac      3540
     taccgaggtc tagtcacggc aataacatgc ttctagtgat gttcgacaag ttctccaagt      3600
     gggtggagct agcagccgtc agaaaagcaa caacagaaat tgtattaaaa gttttacggg      3660
     aacagatcct cacacgatat ggtacaccga aaaaactcat ctcggacaac ggggtacagt      3720
     ttacgagtaa taagtttaag gcacagttac agaaatgggg aatcgtccac cagttaacag      3780
     cgccatacac cccgcaagag aacccagccg agagggcaaa taggacaata aaaactatga      3840
     tagctcaatt ctccggaacc gaacacacac ggtgggacga ctggctaccc gaaatagcaa      3900
     tggccatcaa tagcagcagg tcagaatcaa caggatacag cccggcgtac ctactatacg      3960
     gacgggaaat acgactacct gggagcctgt ataacgaaac cacacctgga tccggaatgg      4020
     taaaggaaac gatagaggca aggttgcaac gcatgataga aacgagcaaa ctagcacatc      4080
     ggaacatggg aaaagcagca caagaccaag ccagatcata caacctacgg aaaagagact      4140
     ggagacccaa agtaggagat ctcgtatggg aacgacaaca cccattgtca aaggcagcta      4200
     ttgggtttgc agcaaagtta gcaccgaaat acgagggccc attcaaagtg acgggtttcg      4260
     tttcaacagt tatagcgaca ataagacata cggcgacagg aaaaacacac agagcataca      4320
     taaacgaact gaaacctgta gtagagaacg aagtagcttg aagtgatatc tcccaactaa      4380
     tcaccaaaas cattacttaa ttttcagaat ggacaagaaa ctggaaagct ccctaaaaaa      4440
     ataccgggaa aacctggaaa gcctwaacca gcagcggcgt cgagtcatca tactcggggc      4500
     cgtggacgtg gcaggtccag ctggaggcag aagaccaacc agggcggcac cggtcgcaag      4560
     gcaggcacca gctaggagag aagaaacaaa cccaacaacg acgacaatga caatacaagg      4620
     acacggaaaa ggaacaggat acgaaccaaa caaccgcggg gaatagccac agatcaagat      4680
     ccccacagca aaggacatcc acaggacaaa cgaaaccaac taatggacag acagcgccac      4740
     ggaccacgga agccacggcc ccgggggag                                        4769
//
ID   Gypsy-10_DEl-LTR repbase;    DNA;    INV; 1258 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DEl_;
KW   Gypsy-10_DEl-LTR; Gypsy-10_DEl-I.
XX
NM   Gypsy-10_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1258
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 529-529 (2012).
XX
RN   [2]
RP   1-1258
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1258 BP; 360 A; 374 C; 272 G; 250 T; 2 other;
     tgtgacgacc caccgtcaca aatatataaa attcaacttt cacattaaag cttaaaaaga        60
     acattccaaa tactggcctt ttattattca aacgcgcgcc caaagccaac agcacccggt       120
     cacatttatt cgacgaagtt atcgattgcc gataatcatc gcccaataaa cccgattacc       180
     caaagcggga ttatcatcat cgtccgatct ggtcacacta agcagcgcct atataagcgg       240
     agacacagcc ccagaccagt cacttgcgtt ccgacgactc tcgaggaaac aacaactagg       300
     aggaataccc gggtaagtgt tctggtagtt agtcttggta gtggtggtgg atccgtaaga       360
     gttcggtttg aattcggctc tacgacctgg tgaggatcac cgacgcccgg tgtggtttag       420
     gaatacgcac ccaggcccgg tcgtgatcgc tgagcccggc acggttttcg taactccggc       480
     ccatctcagt gagttcctmc cagaagtcac gtttccggct tccgacccgg aaacgatacg       540
     gaataaaacg gcaggtcgaa actaacgatg cccggcagct cgaaactaac gatgccctac       600
     attcccacat cccactagaa aatccaagta gttcgttcct ctaaaacgac ccagaacact       660
     acgaacccga cgtactcgaa cgacgagaca cgacgacgcc aagcagtgca caatcggccc       720
     ttccgaagcg ccgacaccaa gcagtgcacc cagccacmgc gcaccgtcga caccaagcag       780
     tgcataatcg gccctcccga agcgccaaca ccaagcagtg cacccagctc acgcaagcag       840
     tgctacatca cacatcggca acgccaagca gttcctcgaa ccattgcgca gtgccagcag       900
     caagcagtgc aacatacggc ccttccgtag cgccgatccc gcacacaaag cagtgcgata       960
     ctcaacgagc tgcgatatac tcggcccttc cgcagcgtcg atatcaacaa gcagtaccac      1020
     attcggccct tcagcagcgc cgacgccact tatcaagcag tatcacgctc gatataatta      1080
     tagttagaaa acgtagtctt aatcaatcgt actattaaaa tataaccata ctctgtagcg      1140
     ttcgatttgt gttattcttt ggggaaaggg aggtaaaccg atcaaaagag gaaataaatt      1200
     tctgtctcga accctggcca cggcgagcta taccgcctcc caaaacaggg tcgttaca        1258
//
ID   Gypsy-10_DEu-I repbase;    DNA;    INV; 4355 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DEu_;
KW   Gypsy-10_DEu-LTR; Gypsy-10_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4355
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 867-867 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3409-3831] - Integrase core
CC   'CAAG' target site duplication
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           549..3239
FT                 /product="Gypsy-10_DEu-I_1p"
FT                 /translation="MPRIADLKGDELRFLLRSRNVSVSGTRAELVQRLIDF
FT                 EQSEDVELPAVGLTMQQEEAMSTQSAAISQLQNEMKELKGIAQLVTLQMGN
FT                 AAPAEAPNQQQQHIIDLDIDEISNERSIPTQATSNVRQASVKEIANTLPEY
FT                 DPSDDNAISVNQFIDRVNKVVDAYQWDEKFLLLAIYTRLKGPAKMWLDSSP
FT                 ILHTTWKNFAEAIQDEFGANPDEAEVHFSMANATRRSKETVKEYCFRMSAL
FT                 GVRYKLSEAAVIRYVRSGLQHRELQNSIAAIHFSTMKQLRDAAESYFVNRG
FT                 RSFANKKEFSTKASTFEQKPDSDVKPPRSKESLKCYNCGDMGHFANSCPKE
FT                 RKKSRCTKCNKFHEPNGACQASNVMRLGAANQDKLFTRRICVHSHDYSAFI
FT                 DTGSQASIIRQSVAQQVNAERSKCSMKIRGICGGSCILTESMILDMDIDGK
FT                 SITAKVYVADDDLLQEDFLLGQDVIISAHLELNFESDESRIERAVHQPIAP
FT                 ASDTKIAKLLDNFHNETESEQMRSLLEKFADVFSTGLEGIGKTSVVKADII
FT                 VESSQPVAQAPYRVSEPKKEVVSKMVDELLKQDIITASTSEYASPVVLIKK
FT                 PNGSDRMCVDYRRLNKLIRKENFPVPNIEERLQEAKRFKYFSSLDLNSGYY
FT                 QIEIAPESRKFTAFITTDGLYEFKRLPFGLKNAPAVFNRLMAELQKRVKKA
FT                 DMIHYMDDILIGSQTFAEMYEKLERILKVLKECGLTLNRTSVSCISSWSPD
FT                 TRGRNQCHRRKFLGLTGYFRKFVAGYAIISAPLRILLRKDQPFIWEAPQQD
FT                 AFNELKSCLISNPVVTSFRLDADHELHTDASAVGLAGVLLQREDDQLKPIA
FT                 YYSRATSKPEKNYHSYELEALAVVESLERFKYYIYGKKIEVITD"
XX
SQ   Sequence 4355 BP; 1345 A; 1016 C; 1050 G; 944 T; 0 other;
     aaaagctacc cttcacagtt cagaagtggg atagttgagg ttggatatgc gtggagcgga        60
     aaagttgtgc tagaattcca ggaaaagcag caagaatcat cggcgtggaa agtttgcaat       120
     gggatgtgtt cccaaaggtc tatgtgacaa aggaaattgc aaataacgga tgtgttccat       180
     ttctacgtgg cagacggatt caaggcaaaa tgatcgggaa tctatgtgaa cccgtggaac       240
     caagcaaaag gatcgggaat ctatgtgaac ccgtggaacc aagcagaagg atcgggaatc       300
     ttagtgagcc cgtggaagca aagcagacgg acaggattct tagtgagcct gtggccgcag       360
     aagtctcaga agaagtctct agaagccaga gcacatatac acatacacag gagttgtgtg       420
     tgttggtgaa tttcaagcct cgcgaggtac atatgtatag ttgtctcgct cacgaggtag       480
     ttattgttgt cacgttcgca caagagaact gccaatttag ctaaaagtaa attcaagaac       540
     agtgaataat gccaagaata gcggatctta aaggcgacga gttaaggttc ctgctacgtt       600
     cgagaaacgt gtcagtttcc ggcacaagag ccgaattggt tcaaaggctt atagattttg       660
     aacaatcgga agacgtagag ctgccagcag tggggctcac catgcagcaa gaagaagcga       720
     tgtcaacgca gtcagcggca atttctcaat tgcagaacga gatgaaggag ctaaaaggca       780
     tagctcaatt agtgaccctt caaatgggca atgcagcacc agcagaagca ccaaatcagc       840
     agcagcagca catcatcgat ttggacatcg atgagatcag caacgaaagg agtattccta       900
     cgcaagctac cagcaatgta aggcaagcat cagtcaagga aatcgccaac actttgccag       960
     aatatgatcc cagcgacgac aacgccattt cagtcaatca gttcattgat cgcgtcaaca      1020
     aggtagttga tgcgtatcag tgggacgaga agttcctatt gctcgccatt tatacacgtc      1080
     taaaaggtcc agccaagatg tggctagatt catcccccat tctacacacg acatggaaaa      1140
     acttcgccga agccatacag gacgagttcg gcgcaaaccc agacgaagct gaagtgcatt      1200
     tcagcatggc caatgcaacc aggcgatcaa aggagacggt aaaggaatac tgtttcagga      1260
     tgtccgccct tggggtgcgg tacaagctca gcgaagcagc ggtcataaga tacgtccgct      1320
     caggtctaca gcatcgagaa ttgcaaaaca gtattgcagc cattcatttc tcgaccatga      1380
     agcaactccg tgacgcagcc gagtcttatt ttgtaaacag aggtcgttca tttgcaaata      1440
     agaaagaatt ttcaacaaaa gccagtacct ttgagcaaaa accagacagc gatgttaagc      1500
     cgcccaggtc gaaggaatcc ctgaagtgtt acaattgcgg agatatggga catttcgcca      1560
     attcgtgccc gaaagagagg aaaaagtcac gctgtaccaa atgcaacaaa ttccacgagc      1620
     caaatggagc atgccaagcc tccaatgtta tgcgcttagg agccgcaaat caggacaagc      1680
     ttttcaccag gagaatctgc gtgcactcgc acgattacag cgccttcatc gatacaggta      1740
     gtcaggccag tatcatccgc caatcagttg cacagcaagt caacgctgag cgctccaagt      1800
     gctctatgaa aattagaggc atttgtggag gttcatgtat cctcacagaa tcgatgattt      1860
     tggacatgga catagatgga aaatcgatca cagctaaagt ttacgtagca gacgacgatc      1920
     tattgcagga ggacttcctt ttgggacagg acgtcatcat cagcgctcac ctcgagctga      1980
     atttcgagtc agacgagtca aggatcgaac gagcagttca tcagccgata gcccctgcaa      2040
     gcgataccaa gatcgcaaaa cttctggaca atttccacaa cgaaaccgaa agtgagcaaa      2100
     tgcgcagctt gctggagaag ttcgccgatg ttttctcgac aggattagaa ggcattggaa      2160
     agacaagcgt agtcaaagca gacatcatcg tcgagagcag tcagccagta gctcaagccc      2220
     catatcgagt ttccgagcca aagaaggaag tcgtcagcaa aatggttgac gagcttctca      2280
     aacaggacat catcacagca tccacatccg agtacgccag cccggtggtg ctcatcaaga      2340
     agccgaatgg tagcgatcgt atgtgtgtcg attatcgccg cctaaacaag ctgatcagga      2400
     aggaaaattt cccagtaccg aacatcgagg agcgtctgca ggaagctaaa agatttaaat      2460
     acttttcatc cctggacctc aacagtggat attatcagat tgagatagcc ccagagagtc      2520
     gaaagtttac tgccttcatc accacagacg gattgtacga gttcaagcga cttccattcg      2580
     ggttgaaaaa cgcgcccgct gttttcaatc gactcatggc cgagctacag aagagagtaa      2640
     agaaagcaga catgattcac tacatggacg atatccttat tggtagccaa acgttcgcgg      2700
     agatgtacga gaagcttgag aggatcctga aagttttaaa ggagtgcgga ttaactttga      2760
     accggacaag tgtgagttgt atatcatctt ggtcaccaga tacacgcgga aggaatcaat      2820
     gtcaccgaag aaagtttttg ggtctcaccg gttatttccg caaattcgtc gctggatatg      2880
     ccattatatc agcaccgttg agaatcctat tgcgcaagga tcagccattc atttgggaag      2940
     cgccacagca agatgccttc aacgagctga agagttgcct gatctcgaat ccagttgtca      3000
     ccagttttcg cctagatgcc gatcatgaac tgcatacaga tgccagtgcc gttggtttag      3060
     caggagtgtt gctacaacgt gaagacgatc agctgaaacc aatcgcgtac tatagccgag      3120
     ctacttccaa accggagaag aactatcaca gctacgaact tgaggctcta gctgtcgtgg      3180
     aatctttgga gcgattcaag tactacatct atggcaagaa gatcgaggtt attaccgact      3240
     gagcaccgac tacacatgag caccgagaag acaatggctc gaatccttaa cttgttttgg      3300
     tttccccgaa tgcgaaacta tgtgaaaagc tacaccaagt cctgcgtggg ctgtgcattt      3360
     tacaaatcac caggtggacg ccaggaaggt cagtaccact acgatgacat caagcggatt      3420
     ccattttcca ccatacacat ggatcacctg ggaccatttc cgaagagttc caaaagaaac      3480
     gaacacattc ttgtgatagt cgacgccttt accaaattca ccatagtacg agcggtgaaa      3540
     agtacagcaa caaagcacgt cctggatgta ctacaagatg tcaccagcta cttgggactg      3600
     ccaaatcgaa ttgtaaccga tcgtggtaca gcttttacgt ccaaggattt cgagaagtac      3660
     tgcaagtcga acaatgtgaa gcacatcctc aatgctgtaa ggacaccgag agccaatggt      3720
     catgcagagc gaacaaaccg cataattctg tcaatgttat tgccttcaaa tgacaacgac      3780
     aagcgttggg atgacaatat tcgatcaatc cgtggagcat taataccatg gtaaatagca      3840
     ctactaaatg ctccccattt cagcttcttt acggttacga gccccgcgac attttgaaga      3900
     acacgataac caacgtcatc caaagccaga accaaaagat gctaacagat gccgaattgg      3960
     aacagctaag agcagatgct gcgacttcag tcaacgatca ccgagctgct gccaagagac      4020
     gctacgatgc caaacattca aagccaactg tatacagcct tggagacctt gtgttggtcg      4080
     agaacgagcc gttcagcaca ggaacatcac gtaaactgga gcctcgctac aaaggtcctt      4140
     ttatcatcag cagagtccag ccaaacgaca gatatctagt cgaagatatc cctcacgccc      4200
     aacggaagca gaggcactac aagtcggtgt attcgtccga caagataaaa ccgtggtgcg      4260
     agctaccacc agatgaccca gatgaagacg accatttgga agatgatccc ccatgtatcc      4320
     tgcgaggacg cagagatttg tcaggagagg ccgac                                 4355
//
ID   Gypsy-10_DEu-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DEu_;
KW   Gypsy-10_DEu-I; Gypsy-10_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-188
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 868-868 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 188 BP; 66 A; 38 C; 38 G; 46 T; 0 other;
     tgtgaacagc gcctaattcg catccctatc gatagcccga tagtgttggg aaacgcctag        60
     ttagtagtgt tgccaagaga cgatagaaag agctagaaga aaactggaga agaacaacgt       120
     gtgcagagcg atttatagtt ttaattccta ctcaattatc cacataataa taaactacat       180
     accactca                                                                188
//
ID   Gypsy-10_DFi-I repbase;    DNA;    INV; 4399 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DFi_;
KW   Gypsy-10_DFi-LTR; Gypsy-10_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4399
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 907-907 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1929-2354] - Reverse transcriptase
CC   Positions [3497-3973] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1317..2267
FT                 /product="Gypsy-10_DFi-I_2p"
FT                 /translation="MTSKVVSIKNQNCIALFDTGSKFNILREDLYNDLDLP
FT                 KLKECSVFLVEFGKNRNANKIKPVGQCKQAVCIDKSVYELNFFIVPLDCMD
FT                 TRMIIGEELCFQAELSFGPSGLRVRNLNNLCEEKFESNLMKIDTVNDSDEL
FT                 DINKSASENAKKDVREIIKNYNPQKSKSTNIEMKIILNDETPIFSRPRRFA
FT                 FAETNVIDDQIEQWLTNGIIEESDSEFTSPVVLAKKNDGSQRLCVDFRRVN
FT                 KVIVKDHFPLPLIDDQLDRLQEALVFSTIDLKNGFFHVPVAESSRKYTSFV
FT                 TQSGQYQFLKVLLAYRTHLECFRDT"
FT   CDS           2840..4372
FT                 /product="Gypsy-10_DFi-I_1p"
FT                 /translation="MSRKTTDTQRKYSSYELEVLAIIEAITKFRVYLLGIP
FT                 FKIITDCNAFTKTLEKQSLCTRVVRWVLLLQEYDYKVEHRSGSRMKHVDAL
FT                 SRYPIMTIVDDSIALGFKQAQERDEHLKAICKIIEDSNSPYKDYFLKSGIL
FT                 YRLVDDSELIVVPKDMQRQIISKAHDRGHFAIKKTKELICKEYFIQNIDDK
FT                 IQKYIDCCIPCILSNRKRGKQEGWLHPLQKEDFPLHTYHVDFLGPLDSTSK
FT                 NYKHILAVIDSFSKFCWLYPTKSTTASEVITKLRGQSNVFGNPACIISDRG
FT                 SAFTAQDFLQYCDDENIKAVKTTTGLPRVNGQVERLNAIIIPVLSKLSVQD
FT                 PTKWYRHVDRVQQAINSTYSRSIDTTPFELLIGVKMKNKDDQQLRELINKE
FT                 SLAFFQDMRNDLRTKAKNQIMKLQSENKKTYNLRRKPARVYNVDDIVAIKR
FT                 TQFGGGLKLKPKFLGPYKITKVKHNNAYDVQKIGNSDGPKTSSTCAEFLKP
FT                 WPTHEDDDETFEANV"
XX
SQ   Sequence 4399 BP; 1544 A; 861 C; 901 G; 1086 T; 7 other;
     tttgaggact cgtccgggaa agactcgaga aaagtgaaaa aaaaaaagag aacttgtacg        60
     acgtggaaaa cagactcagt gaaaacccaa attttttctc ttaaaaatgg cgtgtttaaa       120
     taatttaatt tccaataact taaaaagtgc atcaaaggga agcatttgcg cgttgcataa       180
     attcatcttt gaggatgaag gagacagaaa taaccgcaaa cgactacgag aattcgctgg       240
     ttttcagtat gatgaaaatg acgaagtgta taaagcaaaa tgtgtataca tacaagcaaa       300
     attaactgaa aaagatttaa twtacaatat gcgtagtttt aggcataagc cacgacgaag       360
     aaaacgcgca gctgcatatt tttcgcaacc tacgwtttgg ccaacttctc gctggtaacg       420
     aatcggaaga tccagaaagt gaggaatctg gtgaagagat ggaagacaac gaagaattcg       480
     agagcataga cgaaatccga agtgaggcag catcaaatac acatgcaaat gtaagagagc       540
     gaaagaaaaa tccgcaggac aacgagatgc cgcgtttctc attaaatttg cgtgacatag       600
     aagacttcat aaaagaattt gacggaagtg atgaaattcc agtggaaata tggatttctg       660
     attttgagga tcaagctgta ctgatggggt ggaacgaact gcaaaaactt attttcgcca       720
     aaaaattgtt aaaaggtgtc gcaaagttgt ttgtattgag cgaaaaaagg ttgaattcgt       780
     ggaatgcatt aaaaaactct ttactgtccg agttcagatc aagagtgagt agcaagcaaa       840
     tacacatgca actgggagag agcaaacgcc gtgtaaacga aaatgtgcaa gaatattttt       900
     accggatgaa agatattgca tcgcgaggaa atgttgaaga agaagctctc atccaatatg       960
     tgatcgatgg aatagacgaa ctctctttga acaaatcaat tttgtatggt gccaaaaacc      1020
     ttaacgaatt taagtacaag ctgaaggact accaaacaat gaatkcaaaa tcaagcagtg      1080
     ttaaggaaaa gaaagctcaa gcagtgcamg tcagtkcaaa aggtggcaaa aaagaagtcg      1140
     tctgctacaa ctgtggcgag aagggacacg tttctagtgg ctgcaacaac aaagagaaag      1200
     gaagaaaatg tttcaaatgc aacaaatttg gccacatctc ccgaaactgt ccgcaagcag      1260
     acaaakcagt tgaagaaacc aagtcgaacg cgagagtgtt aagtgagcaa gttagcatga      1320
     caagcaaagt tgtttcgatt aaaaaccaaa actgcattgc cctgtttgac acaggcagta      1380
     aatttaatat tttgcgcgaa gatttgtata atgaccttga tttaccgaag ctgaaagagt      1440
     gcagtgtttt tctagttgaa tttggaaaaa atcgcaatgc caataagatc aagccggttg      1500
     gacaatgcaa gcaagcagtg tgtattgaca aaagcgtata cgaattgaac ttctttatag      1560
     ttccgcttga ttgtatggac actcgtatga ttatcggcga agagctttgt ttccaagcag      1620
     aactatcgtt tggtccaagt ggtttgcgtg tgcgaaattt aaataatctg tgcgaagaaa      1680
     aattcgaatc aaacctaatg aaaattgaca cggtgaatga tagtgatgaa cttgatataa      1740
     acaaatcagc tagtgagaat gcaaagaaag atgtgcgtga aatcataaaa aactataatc      1800
     cgcaaaaatc gaaatcaacg aacattgaaa tgaaaatcat cttgaacgac gaaacaccaa      1860
     tcttttcacg acctcgcaga ttcgctttcg ctgaaacaaa cgttatcgac gaccaaattg      1920
     agcagtggct gacaaatggt attatcgagg aatccgactc cgaatttaca agcccggtag      1980
     tacttgctaa gaaaaacgat ggctctcaac gactctgtgt ggatttcaga cgtgttaaca      2040
     aggtaatagt aaaagatcat tttccattgc ccctgattga cgaccagctc gaccgcttgc      2100
     aagaagccct ggtattcagc acgattgatt taaagaatgg cttttttcat gtgccagtag      2160
     ccgaatccag taggaagtac acctcattcg tgacgcagag cgggcaatac caatttctaa      2220
     aggtcctttt ggcttatcga actcacctgg agtgtttcag agacacataa atgcaatttt      2280
     tcgaaatctt tcacgcagag gaatcgcttt accttacgta gacgatataa ttatcccagc      2340
     aaaagacgaa aaggaggctg tgactaatct cagagaagtt atagaaactt gcagtgaata      2400
     cggacttgaa cttaacttga agaaatgtca tttcctacag actcgtatcc tgtttttagg      2460
     tcacataatc gaaaataaaa ctatttctcc gacgcctcag aagatcgatg ccgtttcaaa      2520
     attcaagact ccacaaaatc tcaagcagtt agaaagtttt ttaggactca caggatattt      2580
     cagaaaattc atccagaact atgctatcat ttcgaaaccc ttgacagatc tgaccaagaa      2640
     caaagttcag ttcgtgattg gtcctgaaga agagatagca atagaatcct tgaagaaata      2700
     cttgacttct atccctgttt tggctattta taacccgaag tatgaaaccg aagtacacac      2760
     tgatgcgtcc atagatggct ttggcgccgt gcttttgcaa aaatcacctg atgacggcca      2820
     atttcacccg gtctatttca tgagcagaaa aactacagat actcagcgta aatattcaag      2880
     ctacgagtta gaggtgcttg cgattatcga agctataaca aagtttagag tttatctcct      2940
     tggcattcca tttaagataa tcaccgactg caatgcattt actaagacgc tagaaaaaca      3000
     aagtctgtgt accagagttg tacgttgggt gcttttgtta caagagtacg actataaagt      3060
     agaacaccgt tcaggctcac gtatgaaaca cgtcgatgcg ctctctaggt atcccataat      3120
     gaccatagta gacgactcca tagccctkgg cttcaaacag gctcaagaac gggatgaaca      3180
     cctgaaagca atctgtaaaa tcatcgaaga ttctaattca ccctataaag actatttcct      3240
     aaagtcaggt atcttgtaca gattagtcga cgactcagaa ttaattgttg ttccaaaaga      3300
     catgcagaga caaatcatta gcaaagcaca tgacagagga cactttgcca tcaaaaagac      3360
     gaaagagttg atctgcaagg aatattttat tcaaaatatc gacgacaaaa tccagaagta      3420
     catcgactgt tgcattccat gcattttaag caaccgcaaa cgtggcaaac aagaaggctg      3480
     gcttcatcca ttgcagaaag aagatttccc gttgcacacc taccacgttg acttcttagg      3540
     tccattagac tctacaagca agaattacaa acacatactc gccgttatcg actcattttc      3600
     gaagttttgc tggctttatc ctacgaagtc aacgactgcc agcgaagtca ttacaaaact      3660
     acgaggtcaa agtaatgtgt ttggcaaccc agcttgcatc atatctgatc ggggatcagc      3720
     tttcaccgcc caagacttcc tacaatactg tgacgacgaa aacataaagg cagttaaaac      3780
     aacgacaggt ctaccaagag ttaacggaca agtcgaaaga ctaaatgcca taattattcc      3840
     agttctgtca aaactcagtg tgcaggatcc cacgaaatgg tatagacatg ttgatcgcgt      3900
     tcagcaagct atcaactcca catattccag aagcatcgac actacacctt ttgagcttct      3960
     aattggagtc aaaatgaaaa acaaagatga ccagcagctt cgcgaactaa taaataaaga      4020
     atctttagct ttctttcagg acatgcgaaa cgatcttcga acgaaagcca aaaaccagat      4080
     tatgaagctc caatccgaaa acaagaagac gtataacttg cgacgcaaac cagcaagggt      4140
     atataacgtt gatgatatcg tagccataaa acgtacacaa tttggaggag gtctcaaatt      4200
     aaagccgaag tttttgggtc cttacaaaat tacaaaagta aaacacaaca atgcttacga      4260
     tgtccaaaaa atcggtaact cagatggtcc aaagacttcc tcaacctgtg ccgaatttct      4320
     taagccgtgg cccacccacg aagacgacga cgaaacattc gaggcgaatg tttaatcaga      4380
     atggcggggg actcccgat                                                   4399
//
ID   Gypsy-10_DFi-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DFi_;
KW   Gypsy-10_DFi-I; Gypsy-10_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-296
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 908-908 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 296 BP; 124 A; 61 C; 57 G; 53 T; 1 other;
     tgccaaaacg acgcattgca aaaagacgac atcgagacga caaaagaaga gccaaagatc        60
     caaaaggaga cgaggatcac aacgacgaga agatgaacac gacgagacca aacccaagca       120
     agaggggagt attcgacgag atctggccga gagaagacgt gcttaattga cgaagcaaac       180
     caaacgacgc gacgacgatc cagttttcca atttaatcat tataaaccgt ttattaaata       240
     ttgtctttaa ataaatgaat aatttcamta acctttaaaa ataaacaaac cctaca           296
//
ID   Gypsy-10_DHyd-I repbase;    DNA;    INV; 6028 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6028
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2400-2400 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..1482
FT                 /product="Gypsy-10_DHyd-I_1p"
FT                 /translation="MSRFDANRHIKTEDPSDEEWDTEPNQLVNQEQNLDSM
FT                 NPEQVQAMIENALQLQEIRHRGELNQLQQQINSLRIEAPQVETYQRIEVDQ
FT                 NIRCDLPLDIIKSVPYFDGVADEYVAWRQSATDAYELFKPFVGSANFYQAV
FT                 TIIRNKIRGPARALLVSHNTVLNFDAIIARLDCTYSDKTSLRLLRQKLEMV
FT                 RQGDLSLMSYYDEVEKKLTLVTNKIVMSHEPQQATLLNKEVRADALHAFIS
FT                 GLKKNLRAVVFPAQPKDLASALALAQEAEASIERSAFSASYAKALEEKNQA
FT                 NESSKNRSHYKRSKGNRDDNGQEKNPHFFKKQHSHQENKNESHAEHPEPME
FT                 IDTSSKFRQHTQFNNNQNLGTQTQKRPNSSERFTGARRQRVNNIAQDDHVD
FT                 HNKKYKEIAEEAVACIDDETESIGLDDSVNFLGNAPGCRSLHDSWLGEV"
FT   CDS           1416..4517
FT                 /product="Gypsy-10_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="LGEFFRERSRLPFITRQLAGRSLKILIDTGAAKNYIK
FT                 PVKELKVVTPAEKPFTVSSIHGSSIIKNKCLVKLFGQTSPFFLLDTLTSFD
FT                 AIIGFDLLTQAEVTLNLRDSKLKYLDKQENIQFHECSNVNFTNVNDIVVPD
FT                 SIKIEFKDMVLKRKKAFSTSKEALPFNTSVVATVRTVDNEPVYSKWYPLPM
FT                 GVSDFVNKEIECLLKDGLIRPSRSPYNSPAWVVDKKGTDTNGNKNKRLVID
FT                 FRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIFLAEQDRE
FT                 KTSFSVNGGKYEFCRLPFGLKNASSIFQRAIDDVLREQIGKTCYVYVDDVI
FT                 VFSENEFDHVKHVDTILKSLCDANMRVSQEKTQFFKDSIEFLGFLVTKDGI
FT                 RTDPEKVKAIQEYVEPKNLYSLRSFLGLASYYRVFIKDFASIAAPLTSILK
FT                 GENGKVSKHMSRKIEVKFNETQRNSFERLRNILASEDVTLMYPNFQQPFDL
FT                 TTDASMNGIGAVLSQGGRPITMISRTLKTSESHYATNERELLAIVWALGKL
FT                 RNYLYGAKEIKIFTDHQPLTFAVSERNTNAKIKRWKAFIDEHNTTVLYKPG
FT                 KENFVADALSRQDLNALQNEPQSDAATIHSELSLTYTIDTTDKPVNCFKNQ
FT                 IILEEARFSLQRKIILFGQKIRHLISFTDKNSLIETLKPLIITDAVNAFHC
FT                 DLPTLACFQHSLVSSFPATKFWHCKNYVSDITDKNEQIEIIVAEHNRAHRA
FT                 AQENTKQILRDYYFPKMTNLAKEAVANCKVCTKSKYDRHPQKQELGTTPIP
FT                 SYAGETLHIDIFSTDNKLFLTCIDKFSKFAVVQPLLSRTAMEVKIHIIQLV
FT                 NIFPEIRTIYCDNEAAFNSEMIRSFLKNNYNIDIVNAPPLHSSSNGQVERF
FT                 HSTLADIARSLKLDGKASETVELILRSTVEYNKSIHSVTNEKPIDIIHGTS
FT                 SEVRLSVKRKIQKAQQAVLDRCNPDRQNRVFEVGETVFLKNNKRLGNKLTP
FT                 LYSEEKVEADLGTTVLIKGRVVHKDNLR"
FT   CDS           4605..6026
FT                 /product="Gypsy-10_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="MLVVAFSRISDYSRSNYIPILDGNVLVWERQGLIRHT
FT                 SNLTEFTNIIDETDKLSELFPQSHMRKLLDVDIDHVRSLLSVVRVHHRTAR
FT                 SLDFLGTVLKVVAGTPDASDFRMIKLSESKLIDANNMQVVINTETQKQINQ
FT                 LTSTVNEIIKAKKANLVDTPHLYEALLARNRMLTTEIQNLILTITLARSGI
FT                 VNPTIFDHNDLKSILNEHPPEVPIVNLMEASSIKVLQSENVVHVLITYPKI
FT                 KSVCNKIAIYPVSHQHTILQLQDNIIADCDGDVLATSGCTTTNFGAICKVA
FT                 KGDNCARALYAGSTANCRSQPSDLRTITEVDDGVIIINDSSAKVSADDGPE
FT                 ISIHGTYLITFERSSMINGTQFTNQREMVKKSPAVAGSPLLNIISHDPVLS
FT                 LPELHLMNTHNLRVISEFKEDLESSDSQANWLISGIILSAAFSCFIVIYHF
FT                 YKRKMESKKVQEVINKYSVSEAGHELSGG"
XX
SQ   Sequence 6028 BP; 2106 A; 1351 C; 1172 G; 1399 T; 0 other;
     ggcgcccaac ggaaatttaa taactggcta ggaacgtctc agaacatgta agttcatcaa        60
     gtattaattt caagtcagtt ttaaaacaaa agatcattta ccttgccaaa atacacccac       120
     gtttaacaac tgccctaaac aatattttgg ctaatgagcc gttttgacgc aaataggcat       180
     atcaaaacag aagaccctag cgacgaagag tgggatacag aacccaatca gttagtcaac       240
     caagagcaga atctagacag tatgaatccc gaacaggtcc aagccatgat agaaaacgct       300
     ttacagcttc aggagataag gcaccgggga gagttgaatc agctacaaca gcaaataaat       360
     agtttgcgca tagaagcgcc acaggtagaa acataccaaa gaatagaggt agatcaaaac       420
     attcgatgtg acctaccact tgacataata aaatcagtac cctatttcga cggcgtggca       480
     gacgaatacg tagcatggag gcaatctgcc actgatgctt acgaattatt caagcccttt       540
     gtgggcagcg ctaatttcta ccaagcggta acaataattc ggaataaaat ccgaggacca       600
     gctagagcgc tgttagtctc acacaatact gtgttgaact ttgacgcaat catagctaga       660
     ttagattgca cttattccga caaaacgtca ttacgccttt tacggcaaaa actagagatg       720
     gtaagacagg gcgacttaag ccttatgagc tattacgacg aagtcgaaaa aaagctaacg       780
     ttggtgacaa ataaaatcgt catgtctcac gaaccacaac aggccacatt acttaataag       840
     gaggtcaggg cagatgccct acatgctttc atctcgggtc tgaagaagaa cctgagagca       900
     gtagtattcc cagcgcagcc aaaagacttg gcatctgctt tggcattggc ccaagaagcc       960
     gaggctagca ttgagcgcag tgctttctct gcatcatacg ctaaagcgct agaagaaaaa      1020
     aatcaggcga acgaaagtag caagaatcga tcgcactaca aacggagtaa aggcaatagg      1080
     gatgataatg gtcaggaaaa gaaccctcat ttctttaaaa aacagcactc tcaccaggag      1140
     aataaaaacg aaagccatgc agaacatcca gagccgatgg aaatcgatac ttcgtctaag      1200
     tttagacaac atactcagtt taacaacaac caaaacttag gcacacagac ccagaaaaga      1260
     ccaaactcgt cagagcgctt tacaggcgcc agacgacaac gtgtcaacaa catagcccaa      1320
     gacgaccatg ttgatcataa caaaaagtac aaggagatag cggaagaagc tgtagcttgt      1380
     atcgacgatg aaactgagtc catcggactc gatgactcgg tgaatttttt agggaacgct      1440
     cccggctgcc gttcattaca cgacagttgg ctgggagaag tctaaaaatt ctaatagaca      1500
     ccggggcggc taaaaactac attaagcccg taaaggagct gaaagtagta acaccagccg      1560
     aaaagccctt cactgtgagc tctattcacg gctccagtat aataaaaaac aaatgtttag      1620
     taaaactttt tggacaaaca tcccctttct tcctgttaga cacgctcacc tcgttcgacg      1680
     caattatagg cttcgacctg ctaacgcagg cggaagttac gttgaacctt cgggatagca      1740
     agttaaaata cttagacaaa caggaaaata tccagttcca tgagtgctct aatgtcaatt      1800
     ttaccaatgt aaacgacata gttgtaccag actcaataaa aattgagttc aaagatatgg      1860
     tgctaaaaag gaaaaaggcg ttctcgacct ctaaagaggc gttacccttt aatacctccg      1920
     ttgtagccac agtgagaact gtggacaacg agccagtcta ctccaaatgg taccccctgc      1980
     caatgggcgt atcggacttt gtaaacaaag aaattgaatg tttactcaaa gatggtttaa      2040
     ttagaccatc aagatcacca tacaacagcc cagcttgggt tgttgacaaa aaagggaccg      2100
     ataccaacgg aaataagaac aagcgccttg taatcgactt taggaagcta aatgaacgaa      2160
     ctattgctga tcggtaccca atgccaagca tccctatgat tctagcaaac ctagggaagg      2220
     caaaattttt tacaaccttg gacttaaagt caggttacca ccagattttc ctcgcggaac      2280
     aagaccgcga aaaaacatcg ttctctgtaa atggcggcaa gtacgaattt tgccgtttgc      2340
     cattcggctt aaaaaacgcg tcaagcattt ttcagagggc catagatgac gtcctaaggg      2400
     aacaaatagg gaaaacatgt tacgtatatg tagatgacgt aatagttttc tcagaaaacg      2460
     agtttgacca tgtgaaacac gttgacacga tactaaagag cctgtgtgac gctaatatga      2520
     gagtctcaca agaaaaaact cagtttttca aggacagtat cgaattccta ggcttcttag      2580
     tgacaaaaga tgggatacga actgatcccg aaaaagtcaa agccatccaa gaatatgtcg      2640
     aaccaaaaaa cctctacagc ctcaggtcct tcctcggatt agcaagctac tatagggttt      2700
     tcataaaaga ctttgcatct atagcagccc ccctaacaag catactcaag ggagaaaatg      2760
     gcaaagtcag taaacatatg tccagaaaaa ttgaggtaaa atttaatgaa acccaacgaa      2820
     actcattcga acggttgcgt aacattttgg catcagaaga tgtcaccctt atgtatccaa      2880
     attttcaaca gccatttgac ctgacaacgg atgcatcaat gaatggcatt ggagctgtcc      2940
     tatcccaagg gggcagacca ataacaatga tttcaagaac tctcaaaact agcgagtcac      3000
     actacgctac aaacgagaga gaattgttag ccattgtatg ggcattagga aaactacgaa      3060
     actacttata tggtgccaaa gaaataaaaa tcttcactga ccatcagccc ctaacctttg      3120
     cagtttccga aagaaacaca aatgccaaaa tcaaaaggtg gaaagccttt atcgacgaac      3180
     ataacacaac agtgttatac aaaccaggga aagaaaactt cgtggctgac gccctttcta      3240
     ggcaagactt aaacgcctta caaaacgaac ctcaatcaga cgctgcaaca atccacagcg      3300
     aattgtcact gacgtacacg atcgatacga ctgacaaacc ggtaaattgc ttcaagaatc      3360
     aaattatctt agaagaagca cgcttttctc tacaacgcaa aatcatttta tttggccaaa      3420
     aaattcgcca cctgatcagc ttcactgaca aaaattcgtt aattgaaact ctaaaaccac      3480
     tcataattac agacgcggta aacgcattcc actgcgatct ccctacactg gcctgctttc      3540
     aacatagcct agtctcaagt ttccctgcaa ccaaattttg gcattgcaag aattatgttt      3600
     ccgacatcac tgacaaaaac gaacagatag aaataatcgt agccgaacac aaccgcgcgc      3660
     atagagcggc gcaggaaaat actaagcaaa tccttcgtga ctattatttt ccaaaaatga      3720
     ctaatttagc gaaagaagct gttgctaatt gcaaagtttg tacaaaatcc aaatatgaca      3780
     gacacccgca aaaacaggaa ttgggtacta caccaattcc ttcatacgca ggcgaaactc      3840
     ttcacatcga catattctcc accgacaaca aactattttt aacttgcatt gacaagttct      3900
     caaagtttgc tgtggtacaa ccacttctat ctcgaacagc aatggaagta aaaatacaca      3960
     ttatacaact agttaatatc tttcctgaaa tcagaaccat atattgtgac aatgaagctg      4020
     cattcaactc agaaatgatc agatcattcc tgaaaaacaa ctacaatata gacattgtaa      4080
     atgcaccacc gcttcacagc agttccaatg gacaggtaga gcgcttccac agtacgctgg      4140
     ctgacatagc cagaagtcta aaactagatg gaaaagccag cgaaactgtt gaactaattt      4200
     tgagatcaac agtagaatac aacaagtcaa tccactcggt tacaaacgaa aaaccgattg      4260
     acatcataca tggcacgtca tcagaagtca gactatctgt aaagagaaaa attcaaaaag      4320
     cacaacaagc agtgcttgac agatgcaacc cagacagaca aaacagagta tttgaggtag      4380
     gcgaaacagt gttcttgaaa aacaacaaaa gacttggaaa caagctaacg ccgctatact      4440
     cggaagaaaa ggtagaagct gacttgggaa ccacggttct cattaaaggg agggtggtcc      4500
     ataaagacaa cctcagatag taactaagtt aggcattaga acacaaaggt ttatttataa      4560
     cttcattgtt cattcattac aggcgtacgc ttttgcttct aaacatgctt gtggtagcgt      4620
     tctctcgaat ctctgattac tcacgatcaa actacattcc catattggat gggaacgtac      4680
     tagtttggga acgacaaggg cttattagac acaccagcaa tttgacagag tttaccaata      4740
     ttatagatga aacagataag ttgtccgaat tatttcccca atcgcacatg cgaaagcttc      4800
     tagacgttga tatagatcac gttagaagtc tattgtccgt agtaagagta catcatagga      4860
     cggccaggag cttagacttc ctaggcacag tactaaaagt ggttgccggt acaccggacg      4920
     cttccgattt caggatgatc aaattgtccg agtcaaagct cattgatgca aacaatatgc      4980
     aagtagttat aaatactgaa acacaaaaac aaatcaatca gttaacctcc accgtaaatg      5040
     aaattataaa ggccaagaaa gccaacttag tagacacccc acatttatat gaggcacttt      5100
     tggcaagaaa cagaatgtta acaacagaaa tacaaaattt aattctcaca atcactctcg      5160
     ctagatcagg catagtaaat cccaccattt ttgatcataa tgacttgaaa tcaatactta      5220
     atgaacaccc tccagaagtc cctatagtta acctgatgga agcctcttcc ataaaagtac      5280
     tccagtccga aaatgttgtc catgtgctaa tcacatatcc aaaaatcaaa tccgtttgta      5340
     acaagatagc aatttaccct gtatcacatc aacacaccat actacagcta caggataaca      5400
     tcatagctga ttgtgacggc gatgttttgg ctacttcagg atgcactact accaactttg      5460
     gcgcaatatg caaggtggca aagggcgata attgcgctcg ggctttatat gccggaagca      5520
     cggcaaattg tcggtctcaa cccagcgact taagaaccat caccgaagta gatgacggag      5580
     taataatcat caatgacagt tcggcgaaag taagcgcaga tgacgggcca gaaatcagca      5640
     tccatggcac ctacctcatc acctttgaac gctccagcat gatcaacggg actcaattca      5700
     ccaaccaacg agaaatggta aaaaagagtc cagccgttgc agggtctcca cttctcaaca      5760
     tcataagtca tgaccctgtg ctgagcttac cggaacttca tttgatgaat acccacaact      5820
     tacgagtcat cagcgagttt aaagaagatc tggaatcatc tgactcccaa gcaaactggc      5880
     tcatcagcgg tataatttta agcgccgcct tcagctgttt tattgtcatc taccactttt      5940
     acaaacgaaa aatggaatcg aagaaggtgc aagaagtcat caacaagtac agtgtgtccg      6000
     aggccggtca cgaacttagt ggggggat                                         6028
//
ID   Gypsy-10_DHyd-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-485
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2405-2405 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 485 BP; 138 A; 103 C; 101 G; 143 T; 0 other;
     agttaacaag taaccctcgc ttgttagaga cttagtattt aagctaccct cgcatgcgca        60
     ttccgctgac acatcagagt cagcgcaatg ccccgacaca aagtcagttc tggaaacatg       120
     atacttgaca ttgcgcaagt agatttgttt atcagttatg ctgagccggc attgccggct       180
     atgggctttg tgtggctttt gctctagctt agctttgact tcagtttcaa gtcaattttg       240
     tattcagttt aatttggaat aaagaagaca caactagtct tgaattatac tccggcacca       300
     agccgtattt ttgttattta attgatacat tgctgagcca caaggccggt aattaataaa       360
     ggaaacaaag taaagtttcc caccgtaatc ttcctaattt ggaattacta gtgagtcatc       420
     gctggaacgt cgccagaaca atcggaggac gacgttggac atcgcgggat cacaacttaa       480
     taact                                                                   485
//
ID   Gypsy-10_DMel-I repbase;    DNA;    INV; 4618 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4618
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1057-1057 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(407..2311,2304..3578,3473..4009,3874..4143,
FT                 4147..4617)
FT                 /product="Gypsy-10_DMel-I_1p"
FT                 /translation="MKITELKVDRLKFLLRERELPTTGSRDQLVQRLMTHE
FT                 KSDEIEFCVSFANEDTDEMLVVAQLQAEMSQLREMVANFISSQIAATNATQ
FT                 GAQAAAANVVPVPPSPTAEIVHTSTITRHASVKEIANTLPEYDPKDENDIS
FT                 VDQFIDRINRVIDAYHWDEKLLLLANYTRLKGAARMWLDASPVLHTTWSEF
FT                 SNAIRDEFGSTPDKAEIHYIMSNVRRQKETIKEYCFRMSALGNRYNLSESA
FT                 IIRYARTGLKHRELQQSIVTTKFATMKQMRDVIDEYFINRGRLQLIKYDPV
FT                 SKNDEPEYKQHESATTSNKLKCFNCGEPGHFSNKCPQPPKQHRCTTCNKVH
FT                 PNNGNCVKPEASTRRLEATNQDKCFYKTIIVQSKPYTAFIDTGSQASMVRE
FT                 IVAQQLDAKRCKSAMQIHGICGGVRILNEAIIIELIIDNTVTEALMYIAED
FT                 KIVQQDFLIGQDILVNPNLTLKFENGMMTFESKRATQQVSHFKKITNLLSN
FT                 IDSNDDKTRMQNLLEDYADVFSSGLKGIGKTNVVEAEIEVEDKQAVAQAPY
FT                 RIPEPKRDVVNAMIDELLQHDIIAKSTSEYASPVVLIKKKNGGDRLCVDYR
FT                 RLNKLIKKENFPVPNIEERLQEAKRFKFFSTLDLNSGTADNYEIVVSPESR
FT                 KFTAFITTDGLYEFKRMPFGLKNXPAAFXRLMAEIQKRVRTGDMPHYMDDI
FT                 LIGSHSFTEMYEKLQRILQVLREXGLTLNVDKCELYKQTISFLGHQLHATG
FT                 IXPGEVKTNAIAEFPRLRNVSDVRKFLGLSGYFRKFIPGYAIISEPLRKLL
FT                 RKDQPFKWEPQQDDAFNELKQXLISKPVLISYDVSXEHEIHTDASSVXLAG
FT                 VLLQKEHDQLKPVAYYSRSTTYSEMKFHXYELEALAVVESLERFKYYVYGK
FT                 RIRVITDCNALRTTMEKRELIPRIARWWLRIQEFDIEILHRSGTCMEHVDA
FT                 LSRAPYEDSREMEEADLKIFKTVIDEADWLFAVQLQDEKIKRIASEMIAKK
FT                 ITENDEYVLELGRLYRKHNNKHLWVVPKQLRYRILVECHDNAGHMTPTKQS
FT                 AELQQAPLGCTXAVTLSHSCRMSRQRRTYDTDKTISRIINQFWFPRMRNYV
FT                 KGYINSCVGCSLYKQRGGRQEGQYHYDNIKPVPFATVHIPPRRDERILVIV
FT                 DAFTKFTIIRAVKSTATRHVIEILRDVCSYVGMPERIGPTEELPLRQKISK
FT                 DSVEDIMSSMYLMLFAPREQMDMPNALTAKNRTDRGTAFTSKDFERFCRGH
FT                 NVKHVLNAVRTPRANGHAERTNRIILSMLLPTVENEKRWDEKLCQIQWSIN
FT                 TMTNKTTNRSPFQLLYCEPRHSLKNSVVRALQCTDDQVLTTEELQQLRTDT
FT                 ATRIDEHRAEAKKRYDAKHAKPTVYSEGDLVLAENEQGSTGTSRKIEPRYK
FT                 GPLIIAKKLPHDRYLVEDLPNAQRTQRHYKSVYVSDKLKPWCQIPLDDTDD
FT                 KDNPADKYLNDSCEVATIRQD"
XX
SQ   Sequence 4618 BP; 1505 A; 1004 C; 1009 G; 1091 T; 9 other;
     gttcagaagt gggatgatca tgagcaaaga cagacagtag cgaaggcgtt ggcaaatata        60
     ataacggaat aacggaactt agttacgatt gaaacatatg tatgtagatg caaagcgttg       120
     tatctatcag tgtgttgata cgaatatatg tgtatttgtc tgcaagcggt gtgaatatac       180
     aagcggtatt tcatacaaac ggtataggca tacaaacggc gggcatatag acaacgtaac       240
     gcaacgcaag aacgaacgaa tcgcaacgta accgtgcaaa aacaatcacg caaacgcaac       300
     gctaacctaa gcgtgcgaaa atatttccgc aacgaaacgt aaacacgtac gccaattcgg       360
     tatatacaaa tacaattacg cgatgttaaa taagacataa aataaaatga aaattacaga       420
     actgaaagtc gatcggttaa agttcctgtt gcgggaacga gagttgccca caactggatc       480
     gcgagatcaa ttagttcaac gtttgatgac ccacgaaaag tcagacgaaa tcgagttttg       540
     tgtttctttc gcgaatgaag atactgacga aatgctggtg gtagcacaac ttcaggccga       600
     gatgagccaa cttcgtgaga tggtggcaaa ttttattagt tcgcaaattg ctgcgacaaa       660
     tgcaacgcaa ggtgcacagg cggctgcagc caacgtagta cctgtaccac cgagtccaac       720
     agctgaaatc gtacacacta gcacgattac acgacatgca tcggtcaagg aaatcgctaa       780
     taccctgcca gagtatgatc caaaggacga gaatgatatc tctgtggatc aatttattga       840
     tcgcattaat cgagtgatag atgcctatca ttgggacgaa aaacttctct tgcttgccaa       900
     ttatactcga ctaaagggcg ctgcccgaat gtggctagat gcgtctccag ttttacacac       960
     cacttggagc gaattttcga atgctattag agatgagttc ggttcgacac ccgacaaagc      1020
     cgagattcac tacataatgt caaatgttcg ccgacagaag gaaactatca aggagtactg      1080
     ctttcgcatg tcagcccttg gaaatcgtta caatttaagc gagtctgcta ttattcgata      1140
     tgcccgaact gggttaaagc accgagagct acaacagagc attgtgacca caaaatttgc      1200
     aacgatgaaa cagatgcgtg acgtcattga cgagtatttt atcaaccgag gtaggcttca      1260
     actgataaaa tacgatccag tatcgaagaa cgatgaaccg gaatataaac aacacgagtc      1320
     tgcaacaaca agcaataaat taaaatgctt taattgcggc gaaccaggtc atttttcgaa      1380
     caaatgccca caaccaccga aacaacaccg atgtactacg tgtaataaag tacaccccaa      1440
     caacggtaac tgcgttaaac ccgaagcgag tacacgacgc cttgaggcaa cgaatcaaga      1500
     taagtgtttc tacaaaacca tcatcgtcca atccaaaccg tatactgcgt ttattgacac      1560
     aggtagccaa gctagcatgg ttcgtgagat tgtagcacaa caactagacg ccaaacgatg      1620
     caagtctgca atgcaaattc atggtatttg tggtggagta cgcattctaa acgaagcaat      1680
     catcatcgaa ctgatcattg ataatactgt caccgaagca ctgatgtata tagccgaaga      1740
     caaaatcgta cagcaagatt ttcttatcgg ccaggatatc cttgttaacc caaatcttac      1800
     gctgaagttt gagaacggaa tgatgacttt tgagagcaaa cgagcaacac agcaagtatc      1860
     tcacttcaag aaaattacta atcttctttc taatatcgac agtaatgacg ataagacacg      1920
     catgcagaac ctactagaag attatgccga tgtcttttcc tctggcctta aaggaattgg      1980
     aaaaactaat gtggtcgaag ctgaaattga agtagaagat aaacaagcag tggcccaagc      2040
     gccataccga attcctgaac ctaagcgtga cgttgtgaac gctatgattg acgagctcct      2100
     ccaacacgat attattgcca aatcaacatc tgagtatgcg agcccagtag ttttgattaa      2160
     aaagaagaac ggaggcgatc gactgtgtgt tgactaccga cgtctgaaca agttgatcaa      2220
     gaaagaaaac tttcctgtgc caaacattga agaacgttta caagaagcga aacgattcaa      2280
     attcttttct acgttggatt tgaacagcgg ataattatga gatcgtagta tcacctgaga      2340
     gtcgcaaatt taccgcattc attacaaccg acggattgta tgaattcaaa cgtatgccat      2400
     ttgggttaaa gaackcaccg gcggctttta awcgattgat ggctgagata caaaaacgtg      2460
     tccgaacggg agatatgccg cattatatgg acgacatatt aattggcagc cattcgttta      2520
     ccgagatgta tgagaaactt caacgtatac tgcaagtgct gcgagaatkt ggcctcaccc      2580
     tgaacgttga caagtgcgaa ttgtacaagc agacaatttc attcttgggg caccagctgc      2640
     acgcaaccgg gatamgtcca ggtgaagtca aaaccaatgc cattgcagag tttccacgtc      2700
     taaggaacgt ttcggatgta cgaaaattcc tagggcttag cggatacttt cgaaagttta      2760
     tccccggata cgccattatt tccgagccct tacgcaagct actacgcaaa gaccagccgt      2820
     ttaaatggga accacagcag gatgacgcat tcaatgaact taaacaackc cttatttcga      2880
     agcctgttct tattagctac gacgtcagcs cagaacacga aatacatact gatgctagtt      2940
     ctgttkgttt agccggagtt ctattgcaaa aggaacatga tcagttaaag ccagtagcct      3000
     attatagccg atcgacgaca tacagcgaaa tgaagttcca cakctacgag ctagaagctt      3060
     tggctgttgt cgagtcactg gaacgtttca agtattatgt ctatgggaaa cgaattcgag      3120
     tcatcactga ttgtaatgcg ttaagaacga cgatggagaa acgagagctg ataccccgaa      3180
     ttgccagatg gtggctacgc atccaagaat tcgatattga gatactgcat cgctcaggta      3240
     cgtgtatgga acacgtcgat gccttaagcc gagcaccata tgaagattcg cgtgaaatgg      3300
     aagaagctga cctaaagata ttcaagaccg tcattgatga agccgattgg ttgtttgctg      3360
     tacaattgca ggacgagaaa ataaaacgaa ttgctagcga aatgatcgct aagaagatca      3420
     ctgagaacga tgagtatgtc cttgaacttg gtcgcttata tcgcaaacat aacaacaagc      3480
     acctttgggt tgtaccmaag cagttacgct atcgcattct tgtagaatgt cacgacaacg      3540
     caggacatat gacaccgaca aaacaatcag ccgaattata aatcaattct ggttcccccg      3600
     tatgcgaaat tatgttaaag gatacattaa ttcatgcgta ggttgttccc tgtataagca      3660
     acgaggaggt cgccaagagg gtcaatacca ttacgataac atcaagccag taccgttcgc      3720
     tacggtacac atcccgcccc ggcgcgatga gcgtatcctg gtaatcgttg atgcatttac      3780
     aaagtttacg atcatacgag ccgttaaaag caccgcaacc cgacacgtta ttgaaattct      3840
     ccgagatgtt tgcagctacg ttggaatgcc tgaaagaatc ggaccgaccg aggaactgcc      3900
     tttacgtcaa aagatttcga aagattctgt cgaggacata atgtcaagca tgtacttaat      3960
     gctgttcgca ccccgcgagc aaatggacat gccgaacgca ctaaccgcat aatcctatca      4020
     atgctattgc ctactgttga gaatgaaaag cgctgggatg agaaactatg ccaaatccag      4080
     tggagcatta acacgatgac caacaagact actaatcgtt ctccatttca gctattatat      4140
     tgttaagagc cacgacactc gttgaagaac tccgtagtac gagcgttgca atgtactgat      4200
     gaccaagtgc tgactaccga agagttgcaa cagcttcgta ccgatactgc aacacgaatt      4260
     gacgaacatc gagcagaagc aaagaaacgt tacgatgcca aacacgccaa gccgacggtt      4320
     tacagcgaag gagacttagt tttggccgaa aacgaacaag gtagtacagg cacttcacgt      4380
     aaaatcgagc ctcgttataa aggcccgtta atcatcgcaa agaaactacc acatgatcga      4440
     tacttggtcg aagatttgcc gaatgcccaa cgaactcagc gacactataa atccgtgtat      4500
     gtgtccgata aactcaagcc gtggtgccag ataccattag atgacaccga tgataaggac      4560
     aacccagcag ataaatatct taatgattcg tgcgaggtcg ctacgatacg tcaggacc        4618
//
ID   Gypsy-10_DMel-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-218
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1024-1024 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 96% similar to each other.
XX
SQ   Sequence 218 BP; 59 A; 52 C; 39 G; 68 T; 0 other;
     tgtaagcata tggcaacctt gcctgtcaag tacggtggta acccgggaga acagatggcc        60
     acgctaatgt gtgttcgctc agtcgtcgtc gaagagcaag ccgtcgcgca gtgatcatat       120
     ttaattcatt taatatttca tgtatctaat ttcatttaat aaacttatat ttgctcaatc       180
     tcattgcctc accactcata aagccattcc tccttaca                               218
//
ID   Gypsy-10_DMo-I repbase;    DNA;    INV; 4951 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4951
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           291..1592
FT                 /product="Gypsy-10_DMo-I_1p"
FT                 /translation="MCDSSLLELENFFEKLTLNETRLKVNADQVKFLVDEA
FT                 VENTRREFEAELNNIKSQISGISNKPAAKTWEKVKIVPGIKCEETLDAVKS
FT                 LPDFSGQPGTYVSWRDAAHNVYEIFKEFNGSSRHFQAVTIIRNKIRGAADG
FT                 VLSSFSTVLNFDAIIARLDFTYSDKRPAYLIEQELSTLRQGTKTILEFYDE
FT                 IEKKLTLLTNKTIMTYEADIANAINEKYRGDALRVFISGLKKPLCDIVFAS
FT                 RPSDLPCALALAEEVGANHERYTFASHFAKGSSETFTRSRQPTQRITNSES
FT                 VTGIRNPHLSNRQTTSVSDTNAVAQTNDNQKLLKGNITPVVTQSLGEPMDV
FT                 DPSTSRFRQNTSYPSRGQSGRQHSNFQQWVNNPPDRQSLKTNHLRINHLSE
FT                 EKSDLDEVYNDRGEQEVADIEEDQVNFLVAVPSCHGYLDM"
FT   CDS           1550..4639
FT                 /product="Gypsy-10_DMo-I_2p"
FT                 /translation="FFSGSSLLPWISRYVGGKEVKLLLDTGASRSYIKPLP
FT                 MLKGIRQTDKKFSVKSIHGTTFITRKCRINVFGVTSDFFILPNLISFDGVI
FT                 GLDLLGKVNATLNFKTKLITHDYGSETIQFLAGQDVSHLQVRSEAVPLAIK
FT                 ELFDEMMKEKSGVFADPNEKLPYNTNIVATIRTRDEEPTHSKLYPYPMSVR
FT                 SFVNNEIQLLLDNGIIRPSRSPYNNPIWVVDKKGIDENGVRKKRMVIDFRK
FT                 LNAKTIEDSYPIPNIEVIMSNLGDSNFFTTLDLKSGFHQIELSERDREKTA
FT                 FSVSSGKYEFCRLPFGLKNAPSVFQRAIDDVLREHIGKYCFVYIDDVIIFS
FT                 KTMEEHLKHIELILSSLYASNMRVSAEKSTFFEDEVEYLGFVVSRSGIKTC
FT                 PKKVEAIKVFPEPCTLKALRSFLGLSGYYRRSIRDYSKIAKPLTSILRGEN
FT                 GSVPGSQPKKIVISLDESQREAFNKLKQILVSEEVMLAYPNFRKPFELTTD
FT                 ASSNALGAVLSQDGRPVTMISRTLQKAEEHYATNERELLAIVWAIKTLRNY
FT                 LYGVKGLKIYTDHKPLTYAVSDRNPNSKIQRWKAFIEEYDATLLYKPGKEN
FT                 QVADALSRQYLNYTEEDNSSDMATIHSEESYSNAIESVTRPFNCYANQIIL
FT                 EQGKTPSKRTTILFGKKIRHIIVFTDFQSLINTVHDCVKLGVVNAIKCELS
FT                 VLGKIQDRLVELFPKTCFRHTENMVTDVFNPNEQLEIINQEHNRAHRAPQE
FT                 NVKQIIRDYFFPKMEKKAKEVALNCRICLQAKYARHPTKHPIRETPIPTYV
FT                 GELLHVDIYSTDSNYFLTCVDKLSKFAVVQKIASRTILDVKIHLLQLLNIF
FT                 SRTKTIYCDNERSLISNTVVSCLRDHFGIAIASAPPMHSTSNGQVERFHST
FT                 LSEIGRCLKLAKGIEDTADIILLATIEYNRTVHSVTGQKPIDLFNSNVEES
FT                 EAAMNQVRKAQETELLNHNKKTVDRKYIKGDKVMVKSNKRLGNKLTPLYKE
FT                 AIIEEDLGSAVKVNGRVVHKDNIK"
XX
SQ   Sequence 4951 BP; 1715 A; 886 C; 986 G; 1364 T; 0 other;
     ggcgcccaac ggaaaaacct gtactacaag aaaaatccag aggaccgacc tacaggcatt        60
     gaaaacactg gacgaatata gacgaaaatc atcaacgctg cgaaaagaat tttgcaaata       120
     cattaaataa ctctaaaacc aatgtaagtg atctgctcat ttttgtatga aatttctcaa       180
     acacgtgttt aaaaaaaaaa acaatttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaga       240
     gagagaactg ttttctatgc tggcatttaa attaagaata agtgctcttt atgtgcgact       300
     cttctttgct tgaattagaa aacttttttg aaaaattaac tttaaatgag actagattaa       360
     aagtgaatgc agatcaagta aaatttttgg tagacgaagc tgttgaaaat acacgaagag       420
     agtttgaggc cgaattaaat aatataaaaa gccaaattag tggtatatct aataaaccgg       480
     ctgcaaaaac gtgggaaaaa gttaaaattg tgccgggaat aaaatgtgaa gaaacgcttg       540
     atgctgtgaa atctcttccc gatttttctg ggcaacccgg tacatacgtg tcttggcgcg       600
     acgcagcgca taatgtgtat gagattttta aagagtttaa tgggagttca cgccactttc       660
     aagctgtaac aattataaga aataaaatta gaggtgctgc tgacggtgta ttatcatctt       720
     ttagtacagt gctcaatttc gatgcgataa ttgctaggtt ggattttact tactcggata       780
     agcgtccggc ttaccttatt gaacaggaat tgtcaacatt gagacaggga acaaagacaa       840
     tcctcgagtt ttacgacgaa atagagaaaa aacttacgct gttaactaat aagacaatta       900
     tgacttacga agcagatatt gctaacgcaa ttaatgaaaa atataggggc gacgcattga       960
     gggtttttat atctggatta aaaaaacccc tatgcgatat agtatttgca tctaggccct      1020
     ctgatctacc atgcgcactt gcactagcag aagaagttgg tgcaaaccat gaacgttata      1080
     cttttgcctc gcattttgca aaaggttcgt ctgaaacgtt tacgaggagt aggcaaccaa      1140
     ctcaaagaat cactaactca gaatcggtga caggcattcg caatccacat ttatctaaca      1200
     ggcaaacgac ttcagttagt gacacaaacg ctgtagcaca gaccaatgac aaccagaaat      1260
     tgctaaaagg taacatcacg ccggttgtta ctcaatcttt gggcgaacca atggatgttg      1320
     acccttctac gtctcgtttt agacaaaaca cgtcgtaccc aagtcgaggc caatcgggca      1380
     ggcaacattc taattttcag caatgggtta ataatccacc tgatcgtcaa agtttaaaaa      1440
     ctaatcattt aagaattaat catctgagtg aagaaaagtc tgatcttgat gaggtataca      1500
     acgatcgtgg cgaacaagaa gtagcagata ttgaagaaga tcaggttaat tttttagtgg      1560
     cagttccctc ctgccatgga tatctagata tgtagggggg aaagaagtaa aactgctact      1620
     cgacacggga gcatcgagaa gctatattaa accattgcct atgctgaaag gtattcggca      1680
     gactgataag aaattttctg taaaatccat acatggaact acatttataa cccgtaaatg      1740
     tagaattaac gtatttggtg taacttccga tttttttatt ctcccaaatc ttatatcgtt      1800
     tgatggcgtt atagggctcg atttattggg aaaagttaat gcgactttga acttcaaaac      1860
     taaacttatc actcatgact atggtagtga aactatacag tttctggcag gccaggatgt      1920
     tagtcatttg caggttcgat ctgaggcagt gccgttggcc attaaggaac ttttcgatga      1980
     aatgatgaag gaaaaatccg gtgtttttgc agatcccaat gaaaagctcc catacaatac      2040
     caatatcgtg gcaacaattc gaacacgtga tgaggagcca acacactcta aactatatcc      2100
     gtaccctatg agtgttagat cgtttgtaaa taatgaaata caattgctgc tcgacaacgg      2160
     cattattaga ccgtcgagat ctccatacaa taatcccata tgggtcgtag ataaaaaagg      2220
     tattgacgaa aatggagtta ggaaaaagag aatggttata gactttagaa agttaaatgc      2280
     aaaaactatt gaggactcat atcccattcc aaacatcgaa gttattatgt ccaatctggg      2340
     cgattccaat ttcttcacga cgcttgacct taaatcaggg ttccatcaaa tcgagctttc      2400
     agagcgagac cgagaaaaaa cagccttttc ggttagcagt ggaaaatatg agttttgtcg      2460
     cctccctttt ggactaaaaa atgctcccag tgtgtttcaa agagcgattg atgatgttct      2520
     gcgagaacat attgggaaat attgctttgt ttatattgat gacgtcatca ttttttctaa      2580
     aactatggag gagcacctaa aacatataga gttgatacta tcaagccttt atgcatcaaa      2640
     tatgagggta tcggctgaga aatcaacatt ttttgaagac gaagttgagt atctgggttt      2700
     cgtggttagt cgcagtggaa ttaaaacttg tcccaaaaaa gttgaagcaa tcaaagtatt      2760
     tccggagcca tgtacgttaa aagctctgcg atccttctta ggattgtctg gttactatag      2820
     gcgatctata agggattact caaagattgc gaaaccattg accagtattc ttagaggcga      2880
     aaatggtagt gtcccagggt cacagcctaa aaaaatagta atttcattag atgagagtca      2940
     acgagaagcg tttaataaac taaaacaaat tttggtctca gaagaggtta tgctcgcgta      3000
     tccaaatttt cgtaagcctt ttgagcttac aaccgacgct tcttcaaatg cgttgggtgc      3060
     agtcttgtct caagatggtc gtcccgtcac aatgatttca agaactcttc aaaaagccga      3120
     agaacattat gcgaccaacg agagagagtt gcttgctatt gtttgggcta ttaaaacgtt      3180
     aagaaattat ctttatggag taaagggcct taagatctat acggatcata agcccctgac      3240
     ctatgccgta tcggatcgaa atccgaattc aaaaatccaa agatggaaag cgttcattga      3300
     ggagtacgat gccacacttc tctataagcc cggaaaagag aatcaagttg cagatgcatt      3360
     atctcgccaa tatttaaact ataccgaaga agataatagt tcggacatgg caacaattca      3420
     tagcgaggaa tcttattcaa atgctataga atccgttacc agaccattca actgctacgc      3480
     caaccaaata attcttgagc agggaaaaac accttctaag cgaactacca ttttgtttgg      3540
     caagaaaata cggcatatta tagtttttac cgactttcag agcttaatta acacggtgca      3600
     tgactgcgtt aaattgggag tagttaatgc aattaagtgt gaattgtcag ttcttggtaa      3660
     aattcaagat cgtctggttg agcttttccc taaaacttgt ttccgacaca ccgaaaatat      3720
     ggttactgac gtttttaacc ctaacgagca gctcgaaatt attaaccagg aacataatag      3780
     agctcataga gctccacaag aaaacgtaaa acaaattatt cgagattatt tttttcccaa      3840
     aatggagaaa aaggctaagg aagttgcttt aaactgtagg atttgtttgc aggcaaagta      3900
     tgctagacac ccaacgaagc atccaatccg cgagacccct attccaactt atgtcgggga      3960
     acttctgcac gttgacattt actctacgga ctcaaactat ttcctgacat gcgtggacaa      4020
     gttatctaag tttgcagtag tgcaaaaaat agcatctcgt acaatattgg atgtaaaaat      4080
     acaccttctg cagctgctaa atatattttc tcgaacaaaa actatttatt gtgacaacga      4140
     gcggtcttta atctctaata ctgttgtatc atgtcttcgt gaccatttcg gtatagcaat      4200
     tgcaagtgct ccacctatgc acagtacatc gaacgggcag gtcgagagat ttcacagcac      4260
     cttaagcgaa attggtagat gtttaaagtt agcaaaagga atcgaggaca cagcggacat      4320
     tattttacta gccactatag agtacaatag aactgttcat tcggtaacag ggcagaaacc      4380
     aatcgattta tttaattcaa atgtagaaga gtctgaagcg gctatgaatc aggttagaaa      4440
     agctcaagaa actgaattat taaatcataa taagaaaact gttgatcgca aatatataaa      4500
     aggggataag gttatggtga aatccaataa acgacttggt aacaaattaa ctcccttata      4560
     taaagaagcc ataatcgaag aggacttagg atcagctgtt aaggttaacg gaagagtcgt      4620
     gcataaagat aatatcaaat aaatatacaa agcaaaaagg aaaaataaaa taaaacaaaa      4680
     aaaatcaaaa tagaataaaa tttaaaaata tttcatacaa attgagcatt tcatattttt      4740
     tgcatattaa ttttgttagt tataaaatag tcaaagcaac aattgttatg catttcacaa      4800
     ggaaaaccac caccgatact atgtcgcctg ggtcagcgat ttggcatgaa aaaagcccac      4860
     cttctcatgg ctttgtgcaa aatggcaggt ggcaattgga agctgatcat attctacgga      4920
     atcgaggacg accccgattg agggggggag t                                     4951
//
ID   Gypsy-10_DMo-LTR repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-420
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 420 BP; 135 A; 90 C; 80 G; 115 T; 0 other;
     agttatcatg taaagctttg taaatccaaa gtttcattcg aaacagaggc ttaaaagcta        60
     tcactcgaag ctttgttccc acaaagctat tctcagttga tagcactatc attgaatctc       120
     cctgtggtta tcactcgaag ctttgtcccc acaaagctat tctcagctga tagcacaaac       180
     gtcaaatatc catgtggttg ctgacgtggc gtccgattat tggcggaaat gcaaaagctt       240
     tatgatgggc aagctttatc tcttggagca gatcgcgtgg ccggcagtat caaaaagaac       300
     tcacctaaga gcaacacgca caagcggttg ctaatagcta ttaattagaa taaagtcgag       360
     ctgatacaaa tcttttgtgg atcgctaaat aaagcctcca cactataaaa taaaataact       420
//
ID   Gypsy-10_DMoj-I repbase;    DNA;    INV; 7063 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DMoj_;
KW   Gypsy-10_DMoj-LTR; Gypsy-10_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7063
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1281-1281 (2012).
XX
RN   [3]
RP   1-7063
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   Positions [1615-2094] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           928..2379
FT                 /product="Gypsy-10_DMoj-I_1p"
FT                 /translation="MANENNLIRPPVLVEQPQVGAHIINRQQQRHIDRQNE
FT                 HLQNRGMANNAEQLIAATVAQILTEQLPTLVRQIVNPSREFNDVDDQTIND
FT                 NQNLNDLNRVPDIVKSLREFSGNKIEFSSWKKSVDRILSIYASQVGSPMYY
FT                 GILHTVRNKIIGQADAALESYNVPLNWSAISKCLTLHYADKRDINTLEYEM
FT                 TMLIQGNNQTVEQFYQVVYNQLTLILNKVGCMELSRESELLMTKMYREKAL
FT                 DTFIRGLRGDLPRILSIKEPADLPSALHLCLKLENQNYRTNIAFNKSHQTG
FT                 HKSVARNATPPMLPPRMVQYAQNPPQMMRSVPIGFRAQVPMQHAWPNTMNQ
FT                 GHQYHRQQYYQTQPQQTNVPPRPLAPKPQPRPEPMDVDKSIQTRMVNYMNR
FT                 PNFEPGKRPPPIANTTDKRQRNFNIQTGEEYPDNDYHNASITMEEYGQTIE
FT                 SYEQQTEHEQSLQEYAQQIEQDDNEQESPIEHDNINFLE"
FT   CDS           5536..7023
FT                 /product="Gypsy-10_DMoj-I_3p"
FT                 /translation="MAMMVQPIEPNMDITNHTAAQTITIYDGLGKIQTTTT
FT                 RIIHIINLGKIKEALEQIEFHTEKNLKFSSLYHTLHHEINQTHLTLRTIDY
FT                 DINKRTTRAINILGTAWKYIAGNPDHDDFVQIEEHINKVIDNNNKQVIINS
FT                 QLEQRLNKLTTVTNTLTNNIRKDDRFTHDIAESLQNQVRLIKEEVINIKYA
FT                 IQWAKVNVINSFLLKKAEIDEIERIFKAGRMPSLSVEEMLEYSDVAIFHNT
FT                 TTLFYVIKIPNVEENDYENLIVKPVVRNNAIINIEYKEILSRKNVMFGIIK
FT                 NCKKYNNIKICSKNNIVNISNSTCLPRLLNGEKSLCEFSNAEHVEPIEEVA
FT                 NGLLILNNFDGVVTSTTTSTWLNGTYVIRFTNESISIGNRTFNNLESSTLR
FT                 VGSSIIQMTPEESRRLQILSLKALQALHINNTQRLEHLKLTTHAISSIILV
FT                 CIVVIIIVIAFLYIKRAKKITLLLDNSQVKKVTEAPRRTIENIQFNDIPFF
FT                 "
FT   CDS           2364..5510
FT                 /product="Gypsy-10_DMoj-I_2p"
FT                 /translation="HQFFRITSSSLPYIECKTKSGEILKILIDTGSNRNYI
FT                 QPKLVSNPIPNQKPFEAVTVGGNIKITHHKIANLFDRQDIQVKFFLLPTLK
FT                 AFDAILGNDSLKELEAVIHSSKNQLIIKDTIFIPLRQKKIEAVNTVIPRTD
FT                 HMTIEQKQRLKQLVTKYPNLFATPNEKLTYTTNVKAEIRTKTDSPIYSKFY
FT                 QFPMSLKDEVHKQIRELLEDGIIRPSRSPYNSPVWIVPKKMDASQEKKYRM
FT                 VIDYRKLNKETIADKYPIPEINEVLAQLGNNKIFSVLDLKSGFHQIPLKEA
FT                 DIEKTAFSVNNGKYEFTRLPFGLKNAPSIFQRALDDILRDHIGKICFIYID
FT                 DIIIFSKDNETHAENLDTIFRTLQEANMKCQLDKCEFFKDKVEFLGFVISD
FT                 KGVETNPDKIATIAKYPYPKTLKDLRSFLGLSSYYRRFIRDFAKLAKPLSS
FT                 LLRGEDGRVSKSQSSKKLINLNQEAIDSFDKIKNALISNEVILQYPDFNKE
FT                 FQLTTDASNYAIGAVLSQNKRPICFLSRTLSKSEENYATNEKEMLAIIWAL
FT                 KALKNYLYGKAKVKIYTDHQPLTHSLSSWNGNARIKRWKTYLEEFDYELLY
FT                 KPGRDNTVADALSRIPIVNQINSVTSTQHSAESSSHNLIPSMEVPINVFKN
FT                 QIFLNKANTDDYEFQIPFPTFHRHLITRQELTENNLVQILKKYLNPSVING
FT                 IITSEEIMNQIQQIYPKHFRNYKIRFTQTQVKDLTNETEQDEHILKIHNRA
FT                 HRNAIENKKQLSETHYFPKMKQKIAALVKQCQVCKEEKYDRQPNNPKLNET
FT                 PIPQYPGHIIHVDIYTTGKNLVLTAIDKFSKLAQGRIIKSRAIEDIKKPLH
FT                 DILFYYGVPKFVVIDNEKSLNSASITFMMRDQLGIEIYNTPPYKSTVNGQV
FT                 ERFHSTLSDIMRCNKRKQEYKTFQELIDKSIYDYNYTIHSTTNRRPLDLFF
FT                 GRNLTTNPEQYEKSRQDNIDRLRQKQTIDLQNHNKRRNEIRTYTPGQEIYV
FT                 KINNRLGTKLSPRYKKETVKEDRNTTVLTSTNRVIHKSNIKNV"
XX
SQ   Sequence 7063 BP; 2874 A; 1454 C; 1140 G; 1594 T; 1 other;
     ggcgcccgag cagggaccgg cttcgcgcgc aatacagcaa aacgtttagt acgtgcgtga        60
     tactgcaagt taaaagcaga gtcggttcaa ataaaacgaa aattcgatcg cgttacaaca       120
     cagcaaaacg cctgtacgag cgcgaccgaa aatcaccaaa gcaactcacg tcgcgtaact       180
     tcgacgttcg gtgaaattcg ttaaaggtag tctggaacgt aatagttcga ttgcccatcg       240
     gtggacggta atcctgtacg gcccgcccac aggatacttc aacggagtct ggtcgcagga       300
     tccccagtag gtacaaccaa aaaggatgaa atccggatca gcagtgaaga ccgccacatc       360
     atcattattg taagttagaa acataagaac acgaaacaag aaactaacaa aactaaaact       420
     aaaacaaata agtgtaataa aatataagaa aagtttttga gaaaaataaa aattaaataa       480
     gtgtaataaa atataagaaa aatttttgag agaaataaaa atcaaacaag tttaagaaaa       540
     tttaagaaaa atttttagaa aaataaagag aaaaataaaa tattaaaaaa aaaaaaaaaa       600
     aaaaaaaaca caaaaaataa aaaagcgtaa agcgatcaaa ttcaaagtga ctacaatagt       660
     agtataaaat aacccaactt tgcgattccc aagggaccct ccaaagtaga agggaaaaac       720
     cagccactgg tcttaataca aaataaaaat aaaagctaaa tttaaattaa aaaaaaaaaa       780
     aataaaaatt ttatatcaga aatttcttta tattaaatta agttgtacta atgataatca       840
     taaactaaca ctaactaact aactaaattc aatcaaaaat ccacctgtaa acataaaaca       900
     atagatcaaa gtcacagttg ataacgtatg gctaacgaga ataatttgat taggccccca       960
     gtgttagtcg aacaacccca agtaggtgca cacattatca ataggcagca acaacgacat      1020
     atagaccgtc agaacgaaca cttgcagaac agaggcatgg cgaataacgc agaacagttg      1080
     attgcagcca ctgtcgctca aattttgaca gaacaacttc cgacgctagt gagacaaata      1140
     gttaaccctt ccagggaatt caatgacgtg gacgatcaga ccataaacga caatcaaaat      1200
     ttgaacgacc ttaacagagt accagacatt gtcaaaagtc ttagggaatt ttccggcaac      1260
     aaaatcgaat ttagctcatg gaaaaagagt gtggatcgca tactctccat atatgcaagc      1320
     caagttggat caccaatgta ctatggcatt ttgcataccg tgagaaataa gatcatcggc      1380
     caagccgacg cggccctcga atcttacaat gttcccctta attggagtgc catctccaag      1440
     tgtctcacac tgcactatgc agataaaaga gatataaata cattagaata cgagatgact      1500
     atgttaatac agggcaacaa ccagacagta gaacagtttt atcaggttgt ctataaccag      1560
     ctgactttaa tactgaacaa ggtaggatgt atggaactca gtagagagtc agaactactc      1620
     atgacgaaaa tgtacagaga aaaagcatta gacactttca tcagaggttt gagaggagac      1680
     ttgccacgta ttcttagcat aaaggaacca gcagaccttc cctcagccct ccatttatgt      1740
     ttgaaattag aaaatcagaa ctatagaaca aacatagcat tcaataaaag ccatcaaaca      1800
     ggtcacaaaa gcgtagctcg aaacgcaaca ccacccatgt tgccaccgcg tatggttcaa      1860
     tacgcacaaa atccccctca gatgatgaga tctgtaccaa ttggtttcag agctcaagtg      1920
     ccaatgcaac atgcatggcc aaataccatg aatcagggac accaatacca tagacaacaa      1980
     tattaccaaa cgcaacctca acagacaaac gtaccgcccc gaccattagc acctaaacca      2040
     cagccacgcc ccgaaccaat ggacgttgac aaaagcatcc aaacacggat ggtaaattac      2100
     atgaacaggc caaattttga gccagggaaa agacccccac caatagcaaa tacaacagat      2160
     aaaagacaac gaaactttaa tattcaaacg ggagaggaat atcccgacaa tgactaccac      2220
     aacgcttcca taactatgga agaatacgga cagaccatcg aaagctacga acaacagacc      2280
     gaacacgagc aatcactaca agagtacgca caacaaatag aacaagatga caacgaacaa      2340
     gagagcccca ttgaacatga taacatcaat tttttagaat aactagctct tcgcttcctt      2400
     acatagaatg taagacaaaa agcggagaga tacttaaaat actaatagac acaggttcga      2460
     acagaaacta catacagccc aaactagttt ctaacccgat tcccaatcaa aagcctttcg      2520
     aagccgtaac agtcggcgga aatataaaaa taactcacca taaaatcgct aatctctttg      2580
     acagacaaga tatccaagta aagtttttcc tattacctac gttaaaagca tttgacgcaa      2640
     ttctgggcaa cgacagcctt aaagaactag aggccgtaat ccatagcagc aagaatcaat      2700
     taataattaa agataccata tttatacccc ttagacagaa aaaaatcgag gcagttaaca      2760
     ctgtcatacc acggacagat cacatgacta tcgaacagaa acaaagatta aaacagttag      2820
     ttacgaaata ccccaattta tttgccaccc caaacgaaaa attaacctac acaaccaatg      2880
     taaaagcaga aattcgaacc aaaacagatt cacccatata ttccaaattt taccaattcc      2940
     caatgtcttt aaaagacgaa gtccataaac aaatacgaga acttttagag gacggaatta      3000
     ttcgcccatc ccgatcaccc tacaattcac ctgtgtggat tgttcccaag aaaatggatg      3060
     cttcccaaga gaaaaagtat agaatggtta ttgattacag aaagcttaat aaagaaacaa      3120
     tagcagacaa gtaccctatt ccagaaataa acgaagtact agcacaactt ggaaataata      3180
     aaattttttc agtgcttgac ttaaaaagtg gcttccacca aattccatta aaagaagcag      3240
     atattgaaaa gaccgccttc tccgtaaaca acggaaaata cgagtttaca cgactccctt      3300
     tcggtctgaa aaacgcacct tctatttttc aaagggcgtt agatgacatt cttcgtgatc      3360
     atatcggcaa gatatgcttc atatacatag acgacattat catatttagc aaagataatg      3420
     aaacacatgc agaaaatctt gacacaattt ttcgaactct tcaagaagct aacatgaaat      3480
     gtcagttaga caaatgcgag ttctttaaag acaaggtaga atttctcggc tttgtcatct      3540
     cagataaagg cgtcgagact aacccagaca aaatagcaac catagccaag tatccctatc      3600
     caaaaacact caaagacttg agatctttcc tcggactctc tagctactat agaaggttca      3660
     taagagattt cgctaagttg gcaaaaccac ttagctctct tttaagaggg gaggatggac      3720
     gagtgtccaa aagccagtct tcaaaaaaac taattaatct caatcaagaa gccattgatt      3780
     cctttgataa aatcaaaaac gctctaatat ccaatgaagt cattttacaa tacccagact      3840
     ttaataagga atttcaatta acaacagacg catccaatta tgcaattgga gcagtcttat      3900
     ctcagaataa acgacccata tgcttccttt caagaacatt gtcaaaatct gaagaaaatt      3960
     atgccactaa tgaaaaagaa atgttggcga ttatttgggc actaaaagcc ctcaaaaatt      4020
     acctttacgg taaggcaaaa gtaaaaatat acacagacca tcaaccactt acacattcgc      4080
     ttagcagttg gaatggcaac gctcgaatca aacgatggaa aacgtaccta gaagagtttg      4140
     attatgaact cctttataaa ccaggcaggg ataacacagt agcagacgca ttgtcaagaa      4200
     tacccatagt aaaccaaatc aattcagtaa catccactca gcatagcgca gaaagttcaa      4260
     gtcataacct aatacctagt atggaggtcc cgataaacgt attcaagaat caaatattct      4320
     taaacaaagc aaacacagac gactatgaat tccaaatccc tttcccaact ttccatagac      4380
     acctaataac tagacaagag ctcacggaaa ataacctagt tcagatatta aaaaagtatt      4440
     taaatccttc tgtaattaac ggaataataa cgtcagaaga aatcatgaat caaattcaac      4500
     aaatataccc caaacacttt aggaattata aaatcagatt cacccagaca caagtgaagg      4560
     acttgactaa cgaaacagaa caggacgaac atatactaaa aatacacaat agagctcacc      4620
     gaaacgcaat agaaaataaa aaacaattat cagaaaccca ttacttccct aaaatgaaac      4680
     agaaaatagc ggcattagtc aaacaatgtc aagtctgtaa agaagaaaaa tacgacagac      4740
     aaccaaacaa ccctaaacta aatgaaacac ccatacctca atatcctgga catataattc      4800
     atgtagacat atacacgaca ggcaaaaact tagtmctgac agcaatagat aaattttcga      4860
     aactagccca aggacgcatc atcaaatcta gagcaataga ggacataaaa aaaccacttc      4920
     acgacatttt attttattat ggagttccga aattcgtggt catagataac gaaaaatctc      4980
     tgaattcagc atccataaca ttcatgatgc gagatcaatt agggattgaa atttataaca      5040
     ctccacctta taaaagcaca gtcaacggcc aagtcgaacg atttcactct acgctttcag      5100
     acattatgag atgtaacaag agaaaacaag aatataaaac ctttcaagaa ttaattgaca      5160
     aatcaatata cgactataac tacaccattc attcaacgac taacagacga ccactagatt      5220
     tgttttttgg cagaaaccta acgacgaacc cagaacaata tgaaaaatct agacaagaca      5280
     acattgacag acttagacag aaacaaacaa tagacttaca gaaccacaat aaaagacgca      5340
     acgaaatacg tacctacaca ccaggacaag aaatatacgt caagatcaac aacagactag      5400
     gaactaaatt gtctcccaga tacaaaaaag aaacagtaaa agaggacaga aacacaacag      5460
     tactaacctc aacaaataga gtcatacata aaagtaatat taaaaacgtt tgacatttat      5520
     agactactcg taataatggc gatgatggta caacctatcg aaccgaatat ggacataacg      5580
     aaccatacgg cagcacaaac cataacgatc tacgacggac taggcaaaat acaaacaacg      5640
     acgacaagaa ttattcacat cattaactta ggcaaaatta aagaagcttt agagcagata      5700
     gaatttcata cagaaaaaaa tttaaaattt agcagtttat accacacctt gcaccacgaa      5760
     attaaccaaa ctcacttgac tttacgcact atagattatg acattaacaa gaggaccaca      5820
     agggccatta atattctagg cacagcttgg aaatacatag caggcaaccc agatcatgat      5880
     gacttcgtgc agatagaaga acatattaat aaagttatag ataacaataa caaacaagta      5940
     ataataaact cacagttaga acaaagatta aataagctga ccacagttac caataccctt      6000
     acaaacaata tacggaaaga cgatagattc acacacgata tagcggaaag tttacagaac      6060
     caagttagat tgatcaaaga ggaggttatt aatataaaat atgccataca atgggcaaaa      6120
     gttaacgtaa taaactcatt tttactaaaa aaagcagaaa tagatgaaat agagagaatc      6180
     ttcaaagctg gtagaatgcc ttcattatct gtagaagaaa tgctagaata ttcagacgtg      6240
     gccatatttc acaatactac tactttgttt tatgtaatta aaatacctaa cgtagaagaa      6300
     aatgattatg aaaatctaat tgtgaaacca gtcgtaagaa ataacgctat cataaatata      6360
     gagtataaag aaatattgtc tcgaaaaaat gtaatgtttg gaattataaa aaattgtaaa      6420
     aaatataata acattaagat ttgttcaaaa aataacattg tcaacattag caatagtaca      6480
     tgtttgccta ggctcctcaa tggagaaaag tcgctgtgtg agttcagtaa cgccgagcat      6540
     gtggaaccca tcgaagaagt ggccaacggt cttctgatcc tcaacaactt tgatggagtg      6600
     gtgacatcga ccacaacaag tacatggtta aacggcacct atgtcattcg ctttaccaac      6660
     gagtccattt caattggcaa ccggactttc aacaacctag agagcagcac actgagagtc      6720
     ggctcttcga taatccagat gacaccagaa gaatcgagac gactccaaat tctatcacta      6780
     aaggctttgc aggcattaca catcaacaat acccaaagat tagaacacct aaaacttacg      6840
     acacatgcaa tatcatccat aatattggtc tgcatagtcg tgataatcat tgtcattgcc      6900
     ttcctctaca taaagagagc gaaaaaaatt acgttactat tggacaatag ccaagtaaag      6960
     aaagtaacag aggcaccaag acgaaccata gaaaacatac agttcaacga cattcccttc      7020
     ttttaatgat cgcttgagga caagctcaaa tcaaaggggg aag                        7063
//
ID   Gypsy-10_DMoj-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DMoj_;
KW   Gypsy-10_DMoj-LTR; Gypsy-10_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-381
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1282-1282 (2012).
XX
RN   [3]
RP   1-381
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 381 BP; 149 A; 82 C; 60 G; 90 T; 0 other;
     agttaacaac aaaaatattt ttcaagttaa aaacaaaaat attctgcatt gcaacaaaac        60
     ccaatgggaa ttgttgcaac acaaataaaa cgtaacaagc tgatcagacc aataagccaa       120
     aactgctgac accatgtcta gcggacttcc tgcacacgcc aaccagagct ccagcaattc       180
     caagaagaat tgcacaacgg ttcaacaaca ccacgagcga cgccgctgcc aacgtcgtcg       240
     actgaaccac agcttagcta gggatagaat tgatttaagt aatttagttg caaatttgtt       300
     cttgaataaa acggactgca tttaagcagt aaaatataaa aacatctttt tttaccgttt       360
     aaataaagaa agaacttaac t                                                 381
//
ID   Gypsy-10_DPer-I repbase;    DNA;    INV; 5007 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5007
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1523-1523 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..1483
FT                 /product="Gypsy-10_DPer-I_1p"
FT                 /translation="MRSRRWVHSLRKEDLVQCARACGLRLEGTLTEMRRIF
FT                 KEWIEKHGEEPEYADALEAWEMKAGGAVTAAQMEDGADPYERLTLPASAEQ
FT                 VTLWRRPSETQEELIASLAVPVKSRSPSRPRAESGERPTRPAQPEQGSARN
FT                 PQREEEGRAGEDRRRGLEEQTTRPSSSSFAHVAKQVREWSFRFDGTAKPLE
FT                 FLEQIEWSADMYGLELNLIPRAMPELLKGRALMWFVANNRQWQTWNAFARS
FT                 FQAYFLPRGYFEKLLQEVRLRKQRWGEPFKDYMVEMQTLMRPLKCTPEEQL
FT                 ELIRDNSMPDLRVFIRPHRCRDLDHMMTLADEFEALERDRLEFQRECPASK
FT                 AKANNPFARPTVTEICRRCQGETAASSDSTGEKRPVPTRRDDQANTNIEAG
FT                 FVKNPAQACRRCGSDRHWAQACNGRPITFCWRCGKVGAPTWQCCPKAGNAP
FT                 RPKPRRAVPGSQDEAPQSS"
FT   CDS           1336..4614
FT                 /product="Gypsy-10_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MQWPTYNILLEVRQGRGPDMAVLPESGKRPATQAAEG
FT                 RARVARRSPPKLVGELTEEDVQLSAVVRIAGSNWKATVDTGATSSFISCEA
FT                 ASRLGEERRQKETRKLVRLADGRSREINSQIEVELAFGDKIVTIPLLVMPG
FT                 VIDELVLGWDFLAAVGAEVTCAGHRVVIPARGHRQGRLEEKLSVAVVANTE
FT                 GSVGPASDGTRAEEGSVEDFLAKELEEFRELKGVSNIATHTITMSDAQPVK
FT                 QRYYPKNPKMQAEINQQVDELLARGCIEPSKSPYSSPIVMVKKKTGKWRLC
FT                 VDFRQINAKSIKDAYPMPRIDYILDQLREARFISSLDLKDGYWQIPLEVGS
FT                 RKFTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMMPHAFAYQD
FT                 DIIVIGRTEEEHKRNLEEVFRRLKNANLRLNVDKCQFFRKELRYLGHLVTG
FT                 DGICTDPEKVAAIKELQPPASVKELRQYLGVASWYRRFVKGFATLVQPLST
FT                 LLKKKAKWEWSTEQQQAFEDVKSRLTADPVLACPDFSKKFVLQTDASDYGL
FT                 GAILTQETEKGERVISYASRTLNSAEKNYSATEKECLAIVWAIRKLKPYLE
FT                 GYHFKVVTDHMALKWLNSIESPTGRIARWALELQQYDFEVAYRKGQLNVVA
FT                 DALSRQPLAERCLRTTEEEAEKGHEPEAECGWIKKVKERMRTEPRKYPDYV
FT                 EEAGRVYRHIPHRAGEEEIASWKLCVPKGLRERVIRENHDSPEAGHAGGRR
FT                 TMARVAARYYWPGMHRDVRTYVRRCEICIRYKPSQLQAAGKMLTRVPEEPW
FT                 ATVCADFVGPLPRSKHGNAMLLVMVDRFSKWTELVPMRKATAEALTKAFRE
FT                 RIVSRFGVPKVVITDNGVQFTSRAFKRFLEQMGVRHQFTAPYTPQENPTER
FT                 TNRTVKTMIAQFTEGNQRNWDEKWPEIMLAVNSGVSESTGYSPAFVVQGRE
FT                 PRLPKALYDDEALGTGQGTLNPDENAAKLREVFQLVRRNLERAAQDQARYY
FT                 NLRRRAWKPTIGDKVWAKQHHLSNAAEGFAAKLAPKYDGPYTIMDFVSPVI
FT                 CKLKKDSEKRTRTAHIGDLKPQPGEGTPETGPGTEA"
XX
SQ   Sequence 5007 BP; 1367 A; 1185 C; 1663 G; 790 T; 2 other;
     actggcgccc aacgtggggc cttgcgacaa gtaaaagaca aagtgcattt gggaagggcg        60
     gtactgagtt tggtatcgcg aggacataaa aatgaggagc cgacgatggg ttcactcatt       120
     gaggaaagag gacttggtcc agtgcgcgcg ggcgtgcggt cttcgattgg aaggcacgct       180
     gaccgagatg cgccgaatct tcaaggagtg gattgagaag cacggagagg aaccggagta       240
     tgcggacgcg ctcgaggcct gggagatgaa ggcgggagga gccgtgaccg cggcccagat       300
     ggaggacggg gcggatccat acgagcgcct gacgctgccg gcgagtgcgg agcaagtaac       360
     gctgtggaga cggccgtccg agacccaaga ggagctcatc gcgagcctgg cggtcccggt       420
     gaaaagccgg tcgcctagcc gaccgcgggc agagagtggg gagaggccca cccggccagc       480
     acagccggag caagggagcg cgagaaaccc acagagggag gaagaaggga gagcagggga       540
     ggatcgtcga cggggactcg aagaacaaac cacgagaccg tccagttcga gttttgccca       600
     cgtcgccaag caggtcaggg agtggtcgtt tcggttcgac ggaacggcga aaccactcga       660
     gttcctggaa cagatcgagt ggtcagccga catgtacggg ttggagttga atttaattcc       720
     gcgagccatg cctgagctgc taaagggtcg ggcgctcatg tggtttgtag ccaacaacag       780
     gcagtggcag acatggaacg catttgcgcg tagcttccaa gcatacttcc tgccgagggg       840
     gtattttgaa aaattactcc aggaggtgag gttgaggaag caaagatggg gagagccatt       900
     caaggactac atggtggaga tgcagaccct catgcggcca ctaaaatgca cgcccgaaga       960
     gcagttggag ctcattagag acaacagcat gccagatttg agggtgttca tccggccaca      1020
     taggtgcaga gacctggacc acatgatgac gctggccgac gagtttgagg ctctggagag      1080
     ggatcggctg gagttccaac gagagtgtcc ggcgagcaaa gcaaaagcaa ataatccgtt      1140
     cgcccgtccg acagtaacgg agatatgtcg ccgctgccag ggcgaaacgg cagccagctc      1200
     tgattcgaca ggggaaaaaa ggccggtccc aacgcggcgg gacgaccaag cgaacacgaa      1260
     catagaggcg gggttcgtga aaaacccagc ccaggcgtgt cgacgatgcg ggagtgaccg      1320
     ccattgggca caagcatgca atggccgacc tataacattc tgctggaggt gcggcaaggt      1380
     aggggccccg acatggcagt gctgcccgaa agcgggaaac gccccgcgac ccaagccgcg      1440
     gagggccgtg ccagggtcgc aagacgaagc cccccaaagc tcgtaggaga actcacggag      1500
     gaggatgtcc agctgtcggc ggtggtgagg atcgcgggca gcaactggaa agcaacggtc      1560
     gataccgggg cgacaagcag ttttatcagc tgcgaggcgg cgagtagact gggggaagag      1620
     aggcgacaga aagaaacgag gaagctggtg cggctggctg acggacgcag ccgggaaatc      1680
     aattcccaga tcgaggtgga gttggccttc ggggacaaga tcgttacaat cccgcttctc      1740
     gtgatgcccg gagtaataga tgagctggtc ctgggatggg atttcctcgc cgcggtcgga      1800
     gcagaggtga cctgtgcggg acacagggtt gtgatccctg cgagaggcca ccgccagggg      1860
     cggttggagg agaagttgtc agtggcggtg gtagcgaaca cggaagggtc tgtcgggccc      1920
     gcatccgacg gaacgcgagc ggaggaggga tcggtggaag acttcctggc aaaggagttg      1980
     gaagagttcc gagaactgaa gggagtgtcg aacatagcta cacacacgat cacgatgagt      2040
     gatgcccagc cggtcaagca gcgttactat cccaaaaatc ccaagatgca agccgaaatc      2100
     aaccaacagg ttgacgaact gctggcaaga gggtgcattg agccatcgaa gagtccgtac      2160
     agttcaccca tcgtgatggt caaaaagaag acgggaaagt ggagattatg cgtggacttc      2220
     agacagataa acgcgaagtc catcaaggat gcgtacccca tgccaagaat agactatatt      2280
     ttggaccagc tcagggaggc acggttcatc agtagcttag acttaaagga cggatattgg      2340
     cagataccac tggaggtagg cagtagaaag ttcaccgcgt tcacggtgcc cggcaaaggg      2400
     ctgttccagt ggaaggtgat gccattcgga ctccactcag cctcggctac gttccagagg      2460
     gcattggatc aggtgatagg ccccgagatg atgccacacg cgtttgcgta ccaagacgac      2520
     atcattgtca tcggccgtac cgaggaggag cacaagcgca acctcgaaga agtttttcgg      2580
     cggttgaaga acgcaaactt gcgcctaaat gtggacaagt gtcaattttt taggaaggag      2640
     ctacgatact tggggcattt ggtaacggga gacggaatct gcaccgatcc cgagaaagtg      2700
     gcggccatta aggagttgca gccgccagcg agtgtcaaag agctacgaca atacttgggc      2760
     gtggcctcct ggtacaggcg tttcgtaaag ggattcgcca cgttggtgca gcccctcagc      2820
     actttgctga agaagaaggc caagtgggaa tggtcaacgg agcagcaaca agcgttcgag      2880
     gacgtaaaaa gtcggctgac agcagacccg gtgttggcat gcccagattt ctcaaagaaa      2940
     ttcgtgctcc agacggacgc cagcgactac ggactggggg cgatcctgac gcaagagacg      3000
     gagaagggcg agagggtcat ctcatacgcc agtaggaccc tgaatagcgc ggaaaagaac      3060
     tattcggcga ccgaaaagga gtgtctggcc attgtatggg ctataagaaa gctaaagccc      3120
     tatctggagg gataccattt caaggtggtc acagaccaca tggcgttgaa atggttgaac      3180
     agcatcgaga gcccaacagg gaggatcgcc aggtgggcgc tggagctaca acaatacgac      3240
     ttcgaagtgg catataggaa agggcagctg aacgtagtgg cggacgcact gtcccgacag      3300
     ccattggcgg agcgatgcct gagaaccacc gaggaggaag cagagaaggg acacgaaccg      3360
     gaggcagagt gcggatggat taaaaaggtt aaagagagga tgaggacgga accgaggaaa      3420
     tatccggatt acgtcgagga agcaggccgg gtataccggc acatcccgca ccgagckgga      3480
     gaagaggaaa tagcatcatg gaagttatgc gtcccaaagg gtctaagaga gagagtcata      3540
     agagagaatc acgactcgcc ggaggcgggg cacgcgggcg gcagaaggac gatggccaga      3600
     gtagccgccc ggtactactg gccggggatg catcgagatg tgaggacata cgtgaggagg      3660
     tgtgaaatct gcatacgcta caaaccaagt caactgcagg cggccggaaa aatgctgaca      3720
     cgagtgccag aggagccgtg ggcaacggtg tgtgccgact tcgtgggccc gctgcccagg      3780
     tcaaagcatg ggaatgccat gttattggtg atggtggatc ggttctcgaa atggaccgag      3840
     ttggtcccca tgagaaaggc cacggcggaa gcactaacga aagcgttccg agagcgcatc      3900
     gtgtcccggt ttggcgtgcc gaaggtggtg atcacggata atggcgtcca gttcaccagt      3960
     agagckttta agaggttttt ggagcagatg ggcgtacggc atcagttcac ggccccgtac      4020
     acgccgcagg agaacccgac ggagcgaact aaccggacgg tgaaaactat gatagctcag      4080
     ttcaccgaag ggaaccagag gaactgggat gagaaatggc cagagataat gctggccgta      4140
     aattcagggg tgtccgaatc caccgggtac tcgccggcgt ttgtggtcca agggagagag      4200
     ccgaggctac caaaggctct atacgatgac gaagcgcttg gcacaggaca gggcacgctc      4260
     aatccggacg agaacgctgc caagttgaga gaggtatttc aactggtgag gcggaatctc      4320
     gaaagagcgg cgcaggacca ggcgaggtat tataacctga ggaggagagc gtggaaaccc      4380
     acgattggag acaaggtatg ggccaagcaa caccatctat ccaacgcggc cgaagggttt      4440
     gcggcaaaac tggccccgaa atacgacggt ccctacacca taatggattt cgtgtccccg      4500
     gtcatttgta aattaaagaa ggacagcgag aaacggacgc ggaccgccca tataggggac      4560
     ctgaagccac aacccgggga aggaacccct gaaacaggcc ctggaaccga agcgtagacg      4620
     acgcacaagg aggggcaacg ggcgaggcat acggagaagg atggacgagc acgaaagaca      4680
     gagactagcg gcaggggcag aaaggagagt cccaactgga tgccacgcag gacaaggtcg      4740
     tacaggatac tcttacaact aaggttcggt aaaactaaga accacgcgtg tcacgcagga      4800
     caggaatcgc ccacaaggga ggagcgggcg gcccaacttg atgccacgca ggacaaggcc      4860
     atacaggata ctcttacaac taaggttgcc gggcagtaaa actaagcagc agacggcggc      4920
     cggcggacca atgaagctgg acctacaaaa aaaaaaagga ggattagctc gtcagccaat      4980
     aggaactgat caaaggcaaa gaaggta                                          5007
//
ID   Gypsy-10_DPer-LTR repbase;    DNA;    INV; 1031 BP.
XX
AC   .
XX
DT   23-AUG-2012 (Rel. 17.09, Created)
DT   23-AUG-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DPer-I;
KW   Gypsy-10_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1031
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1819-1819 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 1031 BP; 280 A; 268 C; 343 G; 140 T; 0 other;
     tgtgaggaaa ggtattccca cacgtagggg gcagtatagg gttaagcgct aacggccgtt        60
     atccggggat atccggaggc ggcgaattcc cgaggagagc tctcccgggg tcccaagatg       120
     agaggggagg acccctggag agagagcagg gatgacgggg gccggcagtg gcagcgcatg       180
     tccaaatatg gtcatgagat cacgccacca gccagtcccg ttggagagcg agcagcggga       240
     tgacgggatc gggccggcag tggcccagcg catgaccaaa tatggtcatg agatcacgcc       300
     accagccagg tcccgttgga aagcgacaag ggaatgaagg aacgccgatg gaaaaatacg       360
     ggcaccgcat ggcggaaagt gccgttagcg ccaggcggca tcggcggcgc cgacgcagaa       420
     gcgagcctat aagaggaggg ccgcgaccag gaaaggggac agtccacaga cggagccaac       480
     aagagtgaag tgaatagtga gccacgaaag tgagaccaag cgaagggaaa agaaccgtag       540
     aaagcgaacg cgttgtgtga ggattgagag gcggactcga gcgtgcagcc aagagccaaa       600
     gacccaaatc ccttgaacca acggcgcccc gcttgaagcg catccctcca ggagtgaggc       660
     accctcgggc cgaaaagcca agtgagtcga gtgagagcga acgcgtcagg cgcctgactg       720
     agaggtggat ttgggccacg tgccaagaat cgctagcccc agtcagtaga gccggcggtg       780
     ccacgcttgg cgacgccgtg gggggcccag ggagcgacgc gctcatcgaa ccacagagga       840
     gaaccagcgc cggagtccga gtagcgtaag atagacttaa gataccaata aagcatttta       900
     acataccagt acaagaccca acccgtgcct tcttacttgt cgtcggggca acatataaat       960
     attgttgcag cgagcctacc gaccgctgag ccagcccagc tgcatcagac ggagaagaac      1020
     ggttcgttac a                                                           1031
//
ID   Gypsy-10_DRh-I repbase;    DNA;    INV; 5031 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DRh_;
KW   Gypsy-10_DRh-LTR; Gypsy-10_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5031
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1569-1569 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2754-3260] - Reverse transcriptase
CC   Positions [4295-4771] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1157..3391
FT                 /product="Gypsy-10_DRh-I_2p"
FT                 /translation="MMERNGGKRQRPMGSERAPRANTTPATAINFNGRRLL
FT                 AQVNIGNTGVRGAIDTGATRSFIARKLANNIARHGIRKQVTEAIRLADGTN
FT                 RTVTEALEVPIHLGNQTSMTTLLILEEVIGDLLLGIDFLEQCNATLRCGGI
FT                 TARMNMNRRNKNRNKNKKQKSHGIGSLATGDLTDAEIQETLKKELEMMSQV
FT                 KGVSHIATHKIFMKHDRPIKQRYYPRNPAMQAIINKQVDDLLAQDLIEPSH
FT                 SAYSSPVVIVEKKNKEWRLCIDYRQLNEHSERDAYPVPRMDHILNQLREAK
FT                 YISTLDLKSGYWQIPMDKGSKQYTAFTVPGRGLFQWKVMPFGLHTAPATFQ
FT                 RALDSVIGPEMEPFAFAYLDDIVVIGRTKREHLEKLQEVMNRLRKANLRIN
FT                 TEKCHFFKEELNYLGHVVSARGIHTDPGKIAAILDMPNPQTTKQVHSFLGV
FT                 ASWYRRFVPNFTELAQPLYNLVKKDTKFKWSEEAEKATQNLKKALTEAPVL
FT                 TCPDFGKTFILQTDASNCGLGAVLTQEDENGEHVISYASRKLTKTEQNYSA
FT                 TEKECLAIHWGIQKMRMYLEGYHFIVITDHQALKWLNSIESPSGRIARWAL
FT                 AMQPYSFEIRYRKGKLNVVADALSRMPEEEAHGAEVEEDIWIKQKLLDLER
FT                 NPETWPDYAIINGKLYRHLPSWAADEDTQPWKLCVAKSQRARVLRENHSEA
FT                 TAGHLGVRKTKHRIMATYSSMYEAAKHVNATRHHNNKQRGKCCHR"
FT   CDS           4019..5158
FT                 /product="Gypsy-10_DRh-I_1p"
FT                 /translation="MARLRDNQRKTIQTSTVMGRRRGHTAMETMRGEKPKS
FT                 TSTARKPQRSNSRTPRGQKNKTPDNGDIQQHVRSCETCQRYKTSQQQAAGK
FT                 MLSQIAKAPCETLCIDFVGPLPRSSHGNNMLLVMFDKFTKWVEIAAVRKAT
FT                 TEIVLKVLREQIISRFGTPKNLISDNGVQFTSNKFKAQLQKWGIAHQLTAP
FT                 YTPQENPAERANRTIKTMIAQFSGTEHTRWDDWLPEISLAINSSRSESTGY
FT                 SPAYLLYGREIRLPGSLFAENTQGSGIIEETVEARWERIMETRKLAHLNMG
FT                 KAAQDQARSYNLRKRDWRPKIGELVWERQHPLSKAATGFAAKLAPKYEGPF
FT                 KVTGFISAVIATIKHTVTGKTHRAYINELKPHVETLD"
XX
SQ   Sequence 5031 BP; 1804 A; 1265 C; 1238 G; 721 T; 3 other;
     gtggcgcccg agcagattaa aaacaaacag atagaaacct caaaatacca acaaagatcg        60
     tttaccctct tcctcaacac agcacggatt aaaaatggaa gacaagctga ctcgaagctg       120
     gatcagcaat tgcaacaagg cccaactgga aatctatctg agggaattcg acatcaagcc       180
     agaaacgcgg tgcgaggaca tgcggaaaca aatgtcggag ttaatcaaga gcggtgccca       240
     cagcgaagaa accaccaaac gtctccaaga cctagcacag aagcacgcga gaaccccatc       300
     accagcaccc gacggaatgg agaaaaacca gaacttgcta cagataccag acaggcaaga       360
     aacaagcagc ggaaaaccca gtacccgagc ccagaaagac cgacaaagtg gccacaatgg       420
     gagtaatacg aagctgggga gaattttacg acggcacggg cgacccgaca gaattcattt       480
     gtagaacgga agagctggca agggcctatg ggatagagct cgaccacgca gcaggagcta       540
     tggtaatttt gctcagagac tgtgccctgg actggtggca cacccatcct accccaatgc       600
     catcgtggga aaacttcaaa aaggaattcc tgggatacta cagaccagcg gaccacgaag       660
     agagagcgat ggaaaacata acacgcaggc accagggtac aaacgagcca gcaaaggact       720
     acgcgcggga actccggaag attatgagat ttaccacact cacggaagaa aaaaactaga       780
     gtgggtctac cggaacagtc ggtggaattt aaaaagtatg ctaaacgggg agaatgccga       840
     accctagcag aatacctgca gttagcaaag gaattcgagg ccctccagcc acaggaacgc       900
     acaacacaac aaacaccgga aaatcactgg acacaacagc agcgaccggg aaatttcggg       960
     agacaacagc aaacatccgg aaatttcggg agacaaacaa gaaaccaatg gagaccccag      1020
     gaaccaccac aagcactgaa cggaggaatc acaagatcat tcagcatgaa taatagatgt      1080
     tcaaggtgca aaggagaggg acacatagga cagcagtgca acaacacacc aagaatatat      1140
     tgctggatat gcggacatga tggaacgaaa cggcgggaaa cgccagaggc ccatgggatc      1200
     agagcgggca cccagggcaa acaccacacc cgcaacagca ataaacttca atggccgacg      1260
     actacttgca caagtgaata taggcaacac aggagttcgc ggggccatag acacgggagc      1320
     cacaagaagt ttcatcgcca ggaaactagc caacaacata gccaggcatg ggataaggaa      1380
     gcaagtaacc gaagccatta gactagcaga cgggacaaac agaacggtca cagaggcact      1440
     ggaagtacca atacatctcg ggaaccaaac aagcatgacg acgctgctaa tcctcgaaga      1500
     ggtaatcggc gaccttctac tggggataga cttcttggaa caatgtaacg cgacactacg      1560
     atgcggaggc atcacagcaa gaatgaacat gaacagaaga aacaaaaaca gaaacaaaaa      1620
     caaaaaacag aagagccacg gcatcggatc actagcgaca ggcgatctaa cagacgcaga      1680
     gatccaagaa accctcaaaa aggaattgga aatgatgagt caagtcaagg gagtcagcca      1740
     cattgccacg cataagatct ttatgaaaca cgatcgccca attaaacaga ggtattaccc      1800
     tcgaaacccg gccatgcaag caataataaa caaacaagtg gacgacctcc tagctcagga      1860
     tcttatcgaa ccctcacatt ccgcttacag ctcgccagta gtaatcgtag aaaagaaaaa      1920
     caaagaatgg agactttgca tagactacag gcagctgaac gagcactcag aacgagacgc      1980
     atacccggta ccccgaatgg atcacatact caaccaacta cgggaggcca agtatataag      2040
     tacactcgac ttaaaaagtg gctactggca aataccaatg gataaaggga gcaaacagta      2100
     caccgctttc accgtgccag gtcgcggact gtttcagtgg aaggtaatgc ctttcggcct      2160
     acacacagca ccagccacgt ttcaaagagc cctggactca gtcataggac cggagatgga      2220
     accctttgca ttcgcatacc ttgatgatat agtggtcatc gggcgcacca aaagggaaca      2280
     cctagaaaaa ctacaggaag taatgaacag actacgcaag gcaaacctga ggataaacac      2340
     agagaaatgc cacttcttca aggaagaact caactaccta ggccatgttg tgagcgcaag      2400
     ggggatacac actgacccgg gaaagatagc cgcgatccta gacatgccaa acccacaaac      2460
     gacaaagcaa gtacacagct tcctgggagt agcttcatgg tacagaaggt tcgtcccgaa      2520
     cttcacggaa ctggcacaac cactgtacaa cttagtcaaa aaagacacaa agtttaagtg      2580
     gagcgaagag gcagagaaag caacgcaaaa cctaaaaaaa gcactaacgg aagcaccggt      2640
     actgacttgc ccggattttg ggaaaacgtt tatacttcag acggacgcca gcaactgcgg      2700
     attaggagcg gtcctgaccc aagaggacga aaacggcgag cacgtaatat catacgccag      2760
     tcggaagctc acaaagacag agcaaaacta ctcagcgacc gaaaaagaat gcctggcaat      2820
     ccactggggc atccagaaaa tgaggatgta cttggaaggg tatcacttta tagtcatcac      2880
     tgatcatcag gcgctaaaat ggctaaactc gatagagagc ccatcaggac ggattgccag      2940
     atgggcgttg gcaatgcagc catactcgtt cgaaatacgc tatcgcaaag gaaagctcaa      3000
     tgtcgttgcg gacgcactat ccagaatgcc agaagaagaa gctcacggag ccgaggtcga      3060
     agaagacatc tggattaaac agaaactcct agacttggaa agaaatcccg aaacatggcc      3120
     agattacgcg ataatcaacg gaaaactata cagacatcta ccgtcatggg ccgcagacga      3180
     ggacacacag ccatggaaac tatgcgtggc gaaaagccaa agagcacgag tactgcgaga      3240
     aaaccacagc gaagcaacag caggacacct aggggtcaga aaaacaaaac accggataat      3300
     ggcgacatac agcagcatgt acgaagctgc gaaacatgtc aacgctacaa gacatcacaa      3360
     caacaagcag cggggaaaat gttgtcacag atagcgaaag caccttgtga aaccttgtgc      3420
     atagactttg tggggccact accaaggtct agccacggta ataacatgtt attagtgatg      3480
     ttcgacaaat tcacgaagtg ggtggagata gcagccgtcc ggaaagcgac cacggaaatc      3540
     gtattaaagg tcctcaggga acaaatcata tcacggtttg gaaccccaaa aaacctgatc      3600
     tcagacaatg gagtacaatt cacaagcaac aagttcaagg cacagctaca gaaatggggg      3660
     attgctcacc aactaacagc cccatacacc cctcaggaaa acccagcaga aagggcaaac      3720
     cgtacgataa aaacaatgat agcccaattc tcaggaacag agcacacaag atgggacgac      3780
     tggctacctg aaatctcgct agcgatcaac agtagcagat cggaatcaac agggtatagc      3840
     ccggcatatc tgctatacgg acgggaaatt agactaccag gaagcctgtt tgccgaaaac      3900
     actcaaggat ccggaatcat agaggagacc gtggaggcac gatgggaacg gataatggaa      3960
     acaaggaaac tagcacacct aaacatggga aaggcggcac aggatcaagc tagatcgtac      4020
     aacctccgga aaagggactg gagacccaaa ataggagagc tagtatggga aagacaacac      4080
     cccttgtcaa aagcagcaac tggattcgcg gccaagctag ccccaaaata cgaaggtcca      4140
     ttcaaagtaa caggcttcat atcagcggtg attgcaacaa taaaacacac ggtgaccggg      4200
     aagacgcaca gagcctacat aaacgaacta aaaccccatg tagaaaccct cgactaacaa      4260
     gcatgcgcaa ccccaaaaac aacaagctaa aaccatmcgc mcatttttca gaatgaacaa      4320
     caaactaaaa aactcgctct ccaagtaccg ggagaacctc caaaggctca accagcagcg      4380
     gcgaagggtg attatactcg gagccgtgga cgtggcaggt ccagctggtt gcaggaagcc      4440
     aaccagggcc gccccggtag gcagacaagc gccagccagg caaccaattt cgacaccgac      4500
     cacagcaaca acaaggcaaa cgaaggcgac accaacaacc agggaaacga ccacggcaac      4560
     aacacggcaa acgatggcga caccaacaac cagggaaacg accacggcaa caacacggca      4620
     aacgatggca acaacaacaa ccaaggaaac gacacggcaa acaacggaca acgaagcacg      4680
     acccctcacg cccaggacaa caaccggmac aaaaaggcac gagctagcgg atttccaacg      4740
     gccacagacg aaatgggtaa ccccgcggcg gctctcttca ctcgactatc ccggagcaaa      4800
     accgatcaac tatcggagga aagtgaggag gagtgggagc caaaaccgcg gggatacaac      4860
     gaccatgaaa agggtagaag aagcggtcgt cgtctaaagg caacctggcg caggggaata      4920
     gaaggacgaa actggtggtc tcggacaatc tcacgacccg aatccggatc gggagaggtg      4980
     gatacgtcca aaaaacaccg gggacaccaa cgtcttaagc gggggggggt g               5031
//
ID   Gypsy-10_DRh-LTR repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DRh_;
KW   Gypsy-10_DRh-I; Gypsy-10_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1290
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1570-1570 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1290 BP; 358 A; 417 C; 274 G; 239 T; 2 other;
     tgtgacgacc cagcgtcaca aataataaaa gaacattcca aaaacaacac acaatgatct        60
     tttattctcc ctacgctaca ccacattcaa aacacgcgcc aaaatcgcgc actttcaaaa       120
     cgcgcgccca aaaacantaa accggtcaca ctaatatacc gatagtcgac taccatcgct       180
     atatttcgtg acccgataac gagttatcga gatcgggatt ctcgtcatcg accactctgg       240
     gcacactcaa cggggcctat ataagcagag gcaagacccc agatgagtca cttgcgttcc       300
     gacgatcttc gaggaaacat cagcaacaag gtaagtgttc tggtagatag tcttggtagt       360
     agtagtggat ccgtaagaac gcggttttta aatcggttct acgacctgga caggatcact       420
     ggcgtcccgg tgtggtttcc tagaaatcag cccagaccca gtcgtgatca ctgaggcggc       480
     ccggttttcg taatacaggc ccacctcagt gagttccccc agaagtcacg tttccggctc       540
     ccgacccgga aacgaaacgg atgtagaaac ggcagttcga acctaacgat gcccggcaga       600
     ccgaaactaa cgatgcccta cattcccgaa tcccactaga aaccaagtag atctctccca       660
     acgacccaga acacttcgac ccgacgtacg cacgacgaag cggttcatca ctcggcccat       720
     ccgcagcgcc gacactcgca gcaagcagtt catcactcgg cccatccgca gcgccgacac       780
     tcgcagcaag cagttcatca ctcggcccat ccgcagcgcc gacactcgca gcaagcagtt       840
     catcactcgg cccatccgca gcgccgacac tcgcagcaag cagttcatca ctcggcccat       900
     ccgcagcgcc gacactcgca gcaagcagtc catcactcgg cccntccgca gcgccgacac       960
     tcgcagcaag cagttcatca ctcggcccat ccgcagcgcc gacactcgca gcaagcagtt      1020
     catcactcgg cccatccgca gcgccgacag caagcagttc atcactcggc ccttccgaag      1080
     cgccgaatcg acagagcaag cagtcccgac gcatctacac acaactacac gattatacga      1140
     ttactttgaa atacacgtct ctagttttac ccatctgtgt cattattggg gaaagggagg      1200
     taaaccgatc tatagaggaa taaatataaa tatctgtcac gaaccctgac cacggcgagc      1260
     tataccgcct cccaaaacag ggtcgttaca                                       1290
//
ID   Gypsy-10_DSer-I repbase;    DNA;    INV; 6116 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6116
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1986-1986 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           326..1573
FT                 /product="Gypsy-10_DSer-I_1p"
FT                 /translation="MAQPVIAAPQIVALSDNNLAEARRQLKDIMPFKGDPE
FT                 TLYTFVSRVDYVISLYQTNDVRQQRILLGAIERNLDGHVTRSLGLPNIEDW
FT                 PTLRSRLVAEFKPQTPNYKLLENFRETPYKGNLRAFCEEAERRRQILISKL
FT                 HLEGNQPDFLIYLQAIKDSIKILIRKLPIQLFTILAHHNIEDLRSLITIAQ
FT                 NEGIYEEHVNFELNKIPENRNKNSNPNQNSKPHKFNTNTQTQYRPSYPQYS
FT                 QPFQPNFNQYTQSFRPTYTQQIPNNQTMWPNHFGPNQYMNTQPFTHKNPFP
FT                 QYSNKIQNPQTAHFKGNTYPQQQPSTSKNTNFPVTKRLRPSDSEQTKMSID
FT                 ELRFQDAHEHEYEEIQPNYYEQQYYDHNQYHRLTNEQQQQQQVQYTQNKDE
FT                 QNLNSSEPNENFRLTAPDNTNT"
FT   CDS           1636..4704
FT                 /product="Gypsy-10_DSer-I_2p"
FT                 /note="Dreverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MINKNIFCLPIQNTICEVLTSNGPITLNNLIMLPSNS
FT                 IFKTTEPFYVHNFSNNYDILIGRKLLKNAQSIINYKNSTVTLFDKTYKLIT
FT                 SKSEKNQNFYIQKPIEPIKKSPQASTKKIDFGLFRLDHLNQEETSRLKGLL
FT                 NKFKNLQYEEGDNLTFTNTIKHVLNTTHNSPIYSKQYPLAQAHEIEVDNQV
FT                 QEMLNQGLIRESNSPYNSPTWVVPKKPDASGKIKYRVVIDYRKLNEITIPD
FT                 RYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDSESIPKTAFSTKSGHY
FT                 EYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLN
FT                 SLQLVFSKLAEANLKLQLDKCEFLKKEASFLGHIVTPNGIKPNPLKVKAIV
FT                 SYPIPTKVKEIRAFLGLTGYYRKFIPNYADIAKPMTKCLKKGAKIDTQNID
FT                 YIEAFKKLKTLIIREPILQLPDFEKKFTLTTDASNLALGAVLSQNGHPISF
FT                 ISRTLNEHELNYSAIEKELLAIVWATKTFRHYLLGRHFLIASDHQPLRWLH
FT                 TLKEPNAKLQRWKAKLNEYQFKIDYIKGKENSVADALSRIKIEENHHSEVT
FT                 QHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDNNKVEHSTIFGNSITTIQY
FT                 NVMTLDKAKQILLDHFIHRNITIHIESDVDFEIIQRAHREIINTTYTKVIR
FT                 SLHLLKNVCSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQ
FT                 NIINECNICNLAKTEHRNTKMPLKITPNPEHCRDKFVVDIYSSEGKHYISC
FT                 IDIYSKFATLEHIKSKDWIECRNALMRIFNQLGKPKLLKADRDGAFTSLTL
FT                 KRWLEAEGIELQLNTAKTGVADVERLHKTINEKIRIINSSDDEEVKLSKIE
FT                 TILYTYNHKIKHDTTGQTPAQIFLYAGHPILNTQNIKERKIDKINEDRQEF
FT                 NIDTRYRKGPLQKGKLENPFKANKNVEKIDEDHYKIINRNRETQYYKTQFK
FT                 KQKKTNAVKLPQESSVR"
FT   CDS           4906..6078
FT                 /product="Gypsy-10_DSer-I_3p"
FT                 /note="env."
FT                 /translation="MKYLYNKLLKELNGITIHQQNRQKRGLFDIIGSSFKF
FT                 LFGTLDENDRVNINKKIDIIAENSIQLHKLNDVIKFVNEGLEKLTNYQNNR
FT                 NSIDTLVYELMQFIEYIEDIEMGMQLSRLGLFNPKLLNYDKLERINSQNIL
FT                 LIKTSTWIDYKNNELLLISHIPINHKTINTIKIIPYPDHNGYQLDYSDQQS
FT                 YFEDKNKIYNQDNKEVNNECIKNIIKRKNPICNFIPTPTKEMIQYVEPNII
FT                 LTWNLTETTIEQNCQELNGDIKINGSKIIRIKQCRVKIGNVILSENSLSPE
FT                 FDLTALYSPINVTKIKIVEHNDVLKLISENNTTLYVIIILVVIVLIIFVVL
FT                 SKLYTQNPLTFLYTKFRKQAKNNQEPQQEIEPAQNQLPALYPEMPAQS"
XX
SQ   Sequence 6116 BP; 2551 A; 1150 C; 789 G; 1626 T; 0 other;
     gtcggtagga tacaaaaagt atccgaaaaa aagaacctcg agtgaaaaat aaattaaatt        60
     ttataattca gttctcgaac aataattacg caaaacgttt taaaacactt caacttggat       120
     tataattcca attcggttgt ccaacaaaaa gtggaagaac aaaacaaaac aaaaacacaa       180
     taagtccaac ggcacctaaa agttaataac aacaaataaa ttttaagaaa attaatttaa       240
     acaaacactt caactttaaa aagtgaaatc aaaaataaac taaaataaat tgttatttta       300
     ctataacaac aaatttactg taacaatggc acaaccagtt atcgccgcac cccaaatcgt       360
     tgcactaagc gacaacaacc ttgctgaagc tcgtcggcaa ctaaaagaca tcatgccttt       420
     taagggtgat ccagaaactc tctacacttt cgtcagcaga gtggactatg taatttcact       480
     ctaccaaact aatgatgtgc gacaacagag gattcttctt ggagccatcg aaagaaactt       540
     ggacggacac gtaacgcgat cattgggcct tccgaacatt gaagattggc ctacccttag       600
     atcgagacta gttgcagaat ttaaacccca aacaccgaac tacaaactac tggagaactt       660
     cagggagaca ccttacaagg gaaatctgag agcattctgc gaagaagcag aaagacgacg       720
     tcaaatacta atttcgaaat tgcatctaga aggtaaccag ccagactttc ttatttatct       780
     tcaggcgatt aaagattcca ttaaaatatt gatcagaaaa ttaccaatac aattattcac       840
     tattttggct catcataaca ttgaagactt aagatcatta atcactatcg cacaaaatga       900
     gggaatatat gaagaacatg ttaattttga attaaataaa attccagaaa atcgtaataa       960
     aaactcaaac cctaatcaaa attctaaacc acacaaattc aatacaaata cacaaaccca      1020
     atatcgacca agttacccac aatattctca accattccaa cctaatttta atcaatacac      1080
     acaatcgttt agacccacct atacacaaca aatacctaac aaccaaacta tgtggccaaa      1140
     tcatttcgga cccaaccaat acatgaacac acaaccattt actcacaaaa atccttttcc      1200
     acaatattca aataaaattc aaaatcctca aacagcacat tttaaaggaa atacataccc      1260
     tcaacaacaa ccctctacat ctaaaaatac taactttccg gttaccaaac gactaagacc      1320
     atcggacagt gaacaaacca aaatgtctat tgacgaatta agatttcaag acgcacacga      1380
     acacgaatac gaagaaatac aacctaatta ttatgaacaa cagtattatg accacaatca      1440
     ataccatagg ttgactaatg aacaacaaca gcaacaacag gtccaataca cccaaaataa      1500
     agatgaacaa aatctaaata gctcagaacc aaacgaaaat tttcggttaa cagccccgga      1560
     caacaccaat acatagaaat agcatacaaa ggttgcacat acaattgcct tatagacaca      1620
     ggatccacaa taaatatgat aaataaaaat atattttgcc ttcctattca aaatactata      1680
     tgcgaagttt tgacatcaaa tggccccatt acattgaaca atttaattat gttacccagc      1740
     aatagtattt ttaaaacaac tgaaccattt tatgtacaca atttttctaa taattatgat      1800
     atactaattg gcagaaaatt gttgaaaaat gcacaatcaa ttataaatta caaaaatagt      1860
     acagttaccc tttttgataa aacatataaa ttaataactt caaagtcaga aaagaaccaa      1920
     aatttttata tccaaaagcc aatagaacca attaaaaaat cacctcaggc atcaacaaaa      1980
     aaaattgatt tcggattatt tcgattagat cacctaaatc aggaggaaac ttcaaggttg      2040
     aaaggtttat taaataaatt caaaaatctt caatatgaag aaggagacaa tctaacattt      2100
     acaaatacca ttaaacacgt actaaataca acacataact ccccaattta ttcaaaacag      2160
     tacccacttg ctcaagctca cgaaattgaa gttgataacc aagtacagga aatgcttaat      2220
     cagggattaa ttagggaaag taattcacca tacaatagtc ctacctgggt agtacccaaa      2280
     aaacctgatg catctggaaa aattaagtat agagtagtaa ttgattatag aaagctaaat      2340
     gaaataacta ttcccgacag atatccaata ccaaacatgg acgaaatcct tggtaaacta      2400
     ggtaaatgcc aatattttac aactatcgat ttggcaaagg gatttcatca aatagaaatg      2460
     gactcagaat caatacctaa aactgcattc tccaccaaaa gcggtcatta cgaatacctt      2520
     cgaatgccat ttggccttag aaatgcacct gctacttttc aaaggtgtat gaataatatc      2580
     cttcgaccgt tgcttaataa acactgttta gtgtatttag atgacataat aattttttcc      2640
     acatccctta ccgaacattt aaattcatta cagctagttt tttccaaact tgcagaagca      2700
     aatttaaagt tacagttaga caaatgtgaa ttcttaaaaa aggaagctag ttttcttggt      2760
     cacatcgtaa cccccaatgg tataaaacca aaccccctta aagttaaagc catagtttca      2820
     tatccaattc caacaaaagt aaaagagatc agagctttcc ttggattaac cggttattat      2880
     cgtaaattta tcccaaacta cgcagacata gcaaaaccaa tgaccaaatg tttaaaaaaa      2940
     ggagcaaaaa tagatacaca aaatatcgac tacatagaag cattcaaaaa acttaaaaca      3000
     ttaataatta gagaaccaat tctccaatta cccgatttcg aaaaaaaatt cactttaacc      3060
     acagatgcca gtaatctagc ccttggagcc gtactttctc aaaatggtca tcctatatcc      3120
     tttattagca gaacacttaa tgaacatgaa ttaaattaca gtgctatcga aaaggaatta      3180
     cttgccattg tttgggccac taaaactttt cgacattatt tactaggacg acattttctc      3240
     attgctagtg accatcaacc tcttagatgg ctgcatactt taaaagaacc aaatgccaag      3300
     ttacaaagat ggaaagccaa gttaaacgaa taccaattta aaatagacta tattaaaggg      3360
     aaagaaaatt cagttgccga tgcattatca agaattaaaa ttgaagaaaa tcaccatagt      3420
     gaagttactc aacatagtgc agaagaagat aatagtaacc taattcattt aacagaaaaa      3480
     ccaataaact atttcaaaaa acaaataatt ttcattaaat ccgataacaa taaagtagag      3540
     cattcaacaa tattcggtaa ctccattaca acaattcaat ataatgtaat gacactcgac      3600
     aaagccaaac aaattttact tgatcatttt attcatagaa acattactat tcatattgaa      3660
     agcgatgtag attttgaaat cattcaaaga gcacacagag aaattattaa taccacttac      3720
     actaaagtaa ttcgcagcct ccacttatta aagaatgttt gttcatacgc cgaattcaaa      3780
     gaaattatac ttcaatcaca tgaaaaactt ttacatccag gtatacagaa aatgactaaa      3840
     ttattcaaag aaaatcactt ttttccaaat agccaactat taattcagaa tataataaat      3900
     gaatgcaaca tatgcaattt ggctaaaaca gaacacagaa ataccaaaat gcctcttaaa      3960
     atcacaccca accctgaaca ttgtcgagac aaatttgtgg tagatattta ttcatctgag      4020
     ggaaaacatt acatcagttg cattgacatt tattcaaaat tcgctacact tgaacatatt      4080
     aaatcaaagg attggataga atgcaggaac gcactaatgc gcatttttaa tcagttaggt      4140
     aaacccaaat tactaaaggc agacagagac ggagctttca ccagcttgac tctaaagcga      4200
     tggcttgaag cagaaggaat tgaattacaa cttaacacgg caaaaaccgg tgtagcagac      4260
     gtcgaaagac tacataagac aataaatgaa aaaatccgaa taatcaactc atccgatgat      4320
     gaagaagtaa aattaagcaa gatagagaca attctttaca catacaatca taaaataaaa      4380
     catgacacca ctggacaaac acctgctcaa atattcttat acgctggaca tccaatatta      4440
     aacactcaaa atattaaaga aaggaaaata gataaaataa atgaagatcg acaggaattt      4500
     aacattgaca ctagatacag aaaaggtcca cttcaaaagg gaaaattaga aaatccattt      4560
     aaagcaaata aaaatgtaga aaaaatagac gaagaccatt acaaaattat taatcgaaat      4620
     agggaaaccc aatactacaa aacacaattt aagaaacaaa agaaaactaa tgccgttaaa      4680
     cttccacagg aatcttctgt acgatgatgt tatttctctt attcaccacg ggccacactc      4740
     aacaaattca aataaccaac acagattccg accttggcta tttactcttc tcaagcgttc      4800
     caattcaaat accggtagta tataacatca ctgtttaaga ttaatctaac agaaatcaat      4860
     attatcactg aatcttttgg taacaaaatt aaagactcgc ccagaatgaa atatttatac      4920
     aataaactac taaaagaatt aaatggtata actattcatc agcaaaatag gcagaaacgt      4980
     ggactatttg acataatagg ttcatctttt aaatttcttt ttggcacact tgatgaaaat      5040
     gatagggtaa acattaacaa aaaaatagac ataattgcag aaaattcaat tcaacttcat      5100
     aaattaaatg atgtcataaa gtttgtgaat gaaggactag agaaacttac taactaccaa      5160
     aataaccgca atagtattga cacacttgtt tatgaactca tgcaatttat tgagtacatt      5220
     gaagacatcg aaatgggcat gcaactttca cgtcttggac tttttaaccc aaagttactc      5280
     aattacgaca aactagaacg cattaacagc caaaatatac ttttaatcaa aacatctacg      5340
     tggattgact acaaaaataa cgaattgtta cttatttcac atatccctat taaccacaaa      5400
     accattaaca ccattaaaat aattccttat cccgaccata atggatatca gttagactat      5460
     tcagatcaac aatcatattt tgaagataag aataaaattt ataatcaaga caataaagaa      5520
     gttaataatg aatgcattaa aaatataatt aagcgtaaaa atccaatttg taattttata      5580
     ccaactccta caaaggaaat gattcaatat gtagaaccaa atattatact tacatggaat      5640
     ctaactgaaa ctacaatcga acaaaattgt caagaattaa atggcgatat taaaataaat      5700
     ggaagcaaaa ttattagaat aaaacaatgt agagttaaaa ttggaaatgt tattttaagc      5760
     gaaaattcgt taagtccaga atttgattta acagcattgt attcaccgat taatgttact      5820
     aagataaaaa tagtagaaca taatgacgtt ttaaaactaa tttcagaaaa taataccaca      5880
     ctttacgtaa ttataatatt agttgttatc gttcttatta tttttgttgt cctatcaaaa      5940
     ttgtatacac aaaatccact taccttttta tatacaaaat ttagaaaaca agcaaaaaat      6000
     aatcaagaac cacaacaaga aatagaaccg gcacaaaacc aattgcctgc attgtaccct      6060
     gaaatgccag cccaatcata ggcaaccctt ttaaggggag ggaagtgaca tattca          6116
//
ID   Gypsy-10_DSer-LTR repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-343
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1973-1973 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Inserted in (TA)n microsatellites.
CC   TSDs may be 4-bp long.
XX
SQ   Sequence 343 BP; 114 A; 73 C; 57 G; 99 T; 0 other;
     tgacatattc acaaattctg ttatgttcca agaaatatga atctgcagcg taggcgatcc        60
     cacgctgaac caatgtaaac aatccacatc cggagcaagc aatgctcctt ctcaataaca       120
     taaataattc ttcaatcaat atcccaagcg ggcgatctcg ctccccaact tttgtaaaca       180
     aagggcagta gaagtaagat ttttgtcaca ttaatttagt cttaagctga gatcaattga       240
     ataaagacgt gaagcggaat attcgtttgt tttaattcaa cttagcgttg tccttagtca       300
     actgacggga cattagttcg actcacaata ttaaaacact tca                         343
//
ID   Gypsy-10_DSim-I repbase;    DNA;    INV; 6559 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_DSim-I.
XX
NM   Gypsy-10_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6559
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1524-1524 (2012).
XX
RN   [3]
RP   1-6559
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [3]: Sequence updated; ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1943..4780
FT                 /product="Gypsy-10_DSim-I_2p"
FT                 /translation="RSATFFRERSRLPFIERQLAGRTLKILIDTGAAKNYL
FT                 KPVKELRNVMPVETPFTVSSIHGSSDVKNKCIMRIFGLDAPFFLLDTLSTF
FT                 DAIIGFDSLTRAGVALNLGDSVIKYANVTEKLKFFDCENVNFTKIDDIVVP
FT                 NSVKAEFKNVILKRIKVFSTSNEALTFNTSVTATIRTKSDEPVYSRLYPYP
FT                 MGAADFVNNEIKELLSNGIIRPSRSPYNSPAWVVDKKGTDDNGIKNKRLVI
FT                 DFRKLNEQTIADRYPMPSIPMILANLGKARYFTTLDLRSGYHQIYLAEKDR
FT                 EKTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREEIGKICYVYVDDV
FT                 IIFSENETEHVKHIDIVLKRLLEANMKVAREKTKFFKESVEFLGFIVTRGG
FT                 TKTDPEKVRAIQEFPEPKNLFSLRSFLGLASYYRSFVKNFASIARPLTHIL
FT                 KGENGTVSKNMSKKVPVTFDETQRNAFDHLRNILASEDVILTYPDFKLPFD
FT                 LTTDASGSGIGAVLSQNKRPITMISRTLKDCELNYATNERELLAIVWAIGK
FT                 LQNYLYGTKEVRIFTDHQPLTYAVSEKNTNAKIKRWKAFIDENNGKIFYTP
FT                 GKQNLVADALSRQPLNNLEAEAQSDAATGHSELSLSYTIETTDKPLNCFRN
FT                 QIILEEANQPLRRDFIIFGNRTRHIINFNDNDSLVESVKEIVNANVVNAIH
FT                 CDFPTLARIQHALRQEFPATKFWHCKAFVSDITNVNEQLEITNTEHNRAHR
FT                 AAQENAKQILRDYYFPNMSKLASEVVANCKVCNKAKYDRHPKKQELGNTPI
FT                 PSYVGEMLHIDIFSTDRKIFLTCIDKLSKFAIVQPLVSRAIIDVRAPILQL
FT                 VNFYPNIKTIYCDNEASFNSETITSLLKNQYSIDVVNAPPLHSSSNGQIER
FT                 FHSTLAEIARCLKIDKKNRGYCGIDLTGYDRIQQVATFGHKV"
FT   CDS           5292..6542
FT                 /product="Gypsy-10_DSim-I_3p"
FT                 /translation="MLELFPQSHMRKLLKVDINHAQNMLDEITVHRRMARS
FT                 LDFLGSALKVVAGTPDAEDLFRIKTNKAALIEANNRQVVINRETQNHINQL
FT                 TDTVNRILKEKRDGLVDAGHLFETLLARNRILISEIQNCMLTITLAKNNMI
FT                 NPVIFNHNDLKSIFDEQLTEVPIVSLMDVSKIKIFQSNIFIHVIVQYPKVK
FT                 FICKKVLLFPVAHYHTMLQIEENVLAECDDGVLAVSDCASTNLATFCKKAV
FT                 HDTCARQLHAGGVATCRTQPSNLEPLTIVDDGVIIVNEKFTRIAIDDGPTT
FT                 TVIGTHLITFERKAVINGSVYLNLNYAVDKSPGIAASPLINITGHDQILSL
FT                 PLLQRMNEHNLRLMQELREDVSAGGAPKIWFVVGVAVSFTLCGLVLLQQHC
FT                 RRKRETSQLQKSIDELAVTEDGV"
FT   CDS           join(360..641,645..2012)
FT                 /product="Gypsy-10_DSim-I_1p"
FT                 /translation="MYNSAFLLDVSRIFCDSTSVQNSSKRLLSFTHINSAG
FT                 LLLYFLSNLLYFAHCVVTPLKYCTSSPDPDLATSVGQLKAVRETQILPLFA
FT                 THITANFTQLHLRPMNWEYREVKQEVDSDGGEEIGFCPAVRQPDSSEMNAE
FT                 MVQALITNVVNAALTAQEQRWRAEIESVRNQVSSLTVQAPQVEVYERVTPD
FT                 PSIKCDVKLDIVKSLPTFSGSHDEYVSWRQAASDAYEVFKRYKGSEAHYEA
FT                 VVIIKNKICGNARALLTSHNTVLNFDAILARLDCTYADKTSLRVLRQNLEM
FT                 VQQRDADLMAYYDEVERKLTLVTNKIVMSHSADTATILNKEVRDDALHAFI
FT                 AGLKRPLKALVLPAQPKDLTTALALAREAENSIERSAFAASYAKAIEDKAL
FT                 VHDGNRRTNKFQGKQWKGEDKNPHFIPKQFQSKPQEDSPWQKRGDPEIVDH
FT                 NKVQPMEIDPSTAKSRQETNWGKPQNNSNNKRRNSSQRYSGQRRQRVNNIT
FT                 QSHEQEESGYSVTAEAEVASIEEGNDSDELKDLLHFLGNAPDCRSSNDSWL
FT                 VEH"
XX
SQ   Sequence 6559 BP; 2052 A; 1523 C; 1426 G; 1558 T; 0 other;
     ggcgcccaac tactcttcga acctaccctg aagatcataa aatgtaagtg actgtgcgac        60
     taagatagca ccaggtcatg atactgtaat aaacgaataa ataaagtgtg cctgtgagtt       120
     ctgcatacct cgccagtaaa aattccgtac agtgtaaaat cccgatatat atatttcttt       180
     gcatttttgt gtggcgatta tgccccgcac ctttcccctg gagtattctg tgaatttact       240
     taatttgcat gtgtctaatt ttaaacaaag aaacgtagaa attttgtgcc cagtgtatct       300
     gtgtgtttgc taagcctgtg cttcgctcca accatttccc aactggaatt tttcttggga       360
     tgtataactc agcgttttta ttggatgttt ctcgaatttt ctgtgactcc acttctgtgc       420
     agaactccag caaacgattg ctaagtttta cacatataaa ttctgcgggt ttattattat       480
     attttctctc aaatttgtta tacttcgccc actgtgttgt gactcctcta aaatattgta       540
     catcgtcgcc agaccctgac ttagctacaa gtgttggcca actaaaagcg gtgcgcgaaa       600
     cgcaaatttt acctttattc gccacccata ttactgccaa ttaattcact cagcttcatt       660
     tgcggccgat gaattgggaa tatagggaag tgaagcaaga agtagacagt gacggtggtg       720
     aggaaatcgg attttgcccc gcagtgagac aaccagactc atcagaaatg aatgcagaaa       780
     tggtccaagc gctcataaca aatgtcgtca acgccgcgct aaccgcacag gagcagcgct       840
     ggcgggcaga aattgaatca gttagaaacc aggtcagctc gttaactgtg caggcacccc       900
     aagtagaagt ttatgaaagg gtaacgccgg accccagcat aaagtgtgat gtcaagttag       960
     atattgtgaa atcgctccca acctttagcg gcagccacga tgaatacgtg tcttggaggc      1020
     aggccgcatc agatgcgtac gaggtattca agagatacaa gggcagcgag gcccactatg      1080
     aagcagtggt aattattaaa aacaaaattt gtggtaacgc gcgagcgctc ctcacgtcac      1140
     ataatactgt gctaaatttc gatgcaattc tggctaggct ggactgcaca tacgcggaca      1200
     aaacgtccct acgagtatta cgtcaaaatc tcgagatggt tcaacaacgt gatgccgatc      1260
     ttatggcata ctatgacgaa gtcgagagga aactcacgct cgtcacgaac aaaatagtta      1320
     tgtcgcatag tgcggacacg gcaactatct taaataagga ggttagggac gatgccctac      1380
     acgcatttat tgctgggctg aaaagaccgc tcaaagcact ggtgctacca gcacaaccaa      1440
     aagaccttac gactgcgtta gcgcttgcgc gggaggctga aaatagcatt gaaagaagtg      1500
     cattcgcggc gtcatacgcg aaggccatcg aagacaaggc tcttgtgcac gatggcaaca      1560
     ggcgtactaa taaatttcag ggaaagcaat ggaaaggaga ggataaaaat ccacacttta      1620
     ttcctaagca attccaaagc aagccccaag aggacagccc ctggcagaag cgcggggacc      1680
     ccgaaattgt agaccataac aaagtacagc ctatggagat cgacccttcg acagccaaat      1740
     ctaggcagga aacaaattgg ggaaagcctc agaataatag caacaacaaa agacggaatt      1800
     catctcagcg ttattcggga caaagacgcc agcgtgttaa taatataact caatcccacg      1860
     agcaggaaga gtcagggtat tccgtcacag ctgaagcgga agtcgccagc attgaagaag      1920
     gtaacgactc cgatgaactt aaagatctgc tacatttttt agggaacgct cccgactgcc      1980
     gttcatcgaa cgacagttgg ctggtagaac actaaaaata cttatcgaca cgggggcggc      2040
     aaagaattac cttaagcccg taaaggagct aagaaatgta atgccggtcg agaccccctt      2100
     tactgtgagc tctattcacg gctccagtga cgtcaagaac aagtgcataa tgcgcatttt      2160
     tgggttagac gccccatttt tcctgttgga cacactgagc acgttcgatg ctataatagg      2220
     cttcgactcg ctaacgcgag caggagtggc attgaactta ggcgacagcg taataaaata      2280
     cgcaaacgtc actgaaaagc tcaaattctt tgactgtgaa aacgttaatt tcactaaaat      2340
     tgatgacata gtggtaccaa attcggtgaa agccgaattt aaaaatgtta ttctgaaaag      2400
     aataaaggtg ttttcgacct ctaacgaggc gctaactttc aacacctcgg tcaccgccac      2460
     tattcgaact aagagtgacg aacccgtcta ctccagatta tacccctatc ccatgggggc      2520
     agcagacttt gttaacaacg agatcaagga gctgctgagc aatggcataa taaggccttc      2580
     cagatcccca tacaacagcc ctgcttgggt agttgacaaa aaagggactg acgataacgg      2640
     catcaaaaat aagcgcttgg taatcgactt taggaaacta aatgaacaaa caattgctga      2700
     ccgctaccct atgccaagca ttcccatgat tttagcgaac ttgggaaaag ccagatactt      2760
     tactacccta gacttaaggt cagggtatca ccagatatac ttggccgaga aggaccggga      2820
     aaaaacctct ttctcagtta acggagggaa atacgagttt tgccgattac ctttcggatt      2880
     aaaaaacgca ggtagcatat tccaaagagc catcgatgat gtgctaaggg aagaaatagg      2940
     caagatatgt tacgtctatg tcgatgacgt cattatattt tcagaaaacg aaaccgaaca      3000
     tgttaagcac atcgatatag tgcttaagcg actgctcgag gccaacatga aggtggcacg      3060
     agaaaagact aaattcttta aagaaagcgt agaattctta ggcttcatag tcactagggg      3120
     gggaacgaaa acagaccctg aaaaagtcag ggcaatacaa gagttccccg aacccaaaaa      3180
     tctgtttagc cttaggtctt tcctcggcct ggcgagctat tacagaagct ttgtgaagaa      3240
     ttttgcctcc attgccaggc ctctcactca tattctcaaa ggggaaaacg gtacagtgag      3300
     taaaaacatg tcgaaaaaag ttcctgttac atttgatgaa acccagcgca atgcgtttga      3360
     tcacctgcgt aacatcctag catcagaaga tgtcattttg acgtaccccg atttcaaatt      3420
     accatttgac ctaaccaccg atgcttcagg cagtggtata ggcgcggtat tgtcccagaa      3480
     caagaggccc atcaccatga tctctcgtac gctgaaagac tgcgaactga actacgccac      3540
     caacgaaagg gaattgttgg cgatagtctg ggcaataggc aaacttcaaa attacctata      3600
     cggtaccaaa gaggtaagga tctttacaga tcaccagccc ctcacatacg cggtatctga      3660
     gaaaaacacc aacgctaaga ttaagcgatg gaaagcattt attgatgaga acaacgggaa      3720
     aatattttac acaccgggaa aacaaaacct ggtagcggac gcgctatctc gacaacccct      3780
     gaacaactta gaggctgagg cccagtccga tgcagcaacg gggcatagtg agctttccct      3840
     ttcgtacact atagaaacca cagacaaacc tctgaactgc ttcagaaacc aaatcatttt      3900
     ggaagaagca aaccaaccgc ttcggcgaga cttcataatc ttcggaaata gaactcgcca      3960
     tatcattaac tttaatgaca acgactcgct tgtagaatcc gttaaagaaa ttgtcaacgc      4020
     caatgtcgtg aacgcgattc actgtgattt ccctaccctg gcgcgtattc aacatgcctt      4080
     gaggcaggag tttcctgcga caaagttttg gcattgtaaa gccttcgtca gtgatattac      4140
     caacgtcaat gaacagcttg aaatcactaa caccgagcac aatcgcgccc atcgggctgc      4200
     acaagagaac gctaaacaaa tcctccggga ttattacttc ccgaatatgt ctaaactagc      4260
     tagcgaagtg gtcgcaaatt gcaaagtctg caataaagcc aaatacgacc gccatcctaa      4320
     gaaacaggaa ttaggaaata cccctatacc ttcatacgtt ggagaaatgt tgcatatcga      4380
     catattttcc actgacagaa aaatcttctt aacctgtatt gacaaattgt ccaaattcgc      4440
     catcgtacaa cccttagtct ctagggcaat catcgatgta cgagccccta ttctccaatt      4500
     ggtaaacttc tacccaaata tcaaaaccat atactgcgac aacgaagcct ctttcaactc      4560
     tgagacaatc acgtcgttgc ttaaaaacca atacagcatc gatgttgtca atgcgccacc      4620
     gctacacagt agctccaatg gccaaattga aaggtttcac agtacactgg cagaaatcgc      4680
     cagatgcctc aaaattgata aaaaaaatag aggatactgt ggaattgatc tcacgggcta      4740
     cgatagaata caacaggttg ctacattcgg tcacaaagtt tagaccagtg gaggttatcc      4800
     acgctggcaa tgacgagatc atgttggcaa tcaaagatag aattgacaag gcacaacaag      4860
     ctaacctgga cagaattaac ccttctagac aaaaccgaat ctttgaagtt ggtgaaaaag      4920
     tacacctacg taacaacaaa aggttaggta acaaattgac tccgctttat tcagaagagc      4980
     gtgtggaagc agatctggga acatctgttc tcattagggg gagggtggtc cataaggaca      5040
     atatcaaata ggcatttcat ctgccacatt cacccttata ttaaacactc accatttgct      5100
     ataatttcca caggcttgcc gtaatatcca tcatacttct aaccaccgca agcgcgcgag      5160
     tcaccgactt ctcgcatgca aaatacatcc cggtgttaga cgggaatgta ttagtatggg      5220
     aacagtatgg cctgattagg cactcgacaa atctgtctga gttttctagc ataattgact      5280
     ctacagtcag aatgcttgaa ctgttcccac agtcccacat gaggaaactt ctgaaagtcg      5340
     acatcaacca tgcccagaat atgctggatg aaattaccgt gcaccgtaga atggccagga      5400
     gcctggattt cctgggctcg gcactcaagg tcgtggcggg cacgcccgac gcggaggacc      5460
     tctttagaat caaaactaac aaagcagccc taatagaggc aaacaatagg caggtagtaa      5520
     taaacagaga aacgcaaaac catattaacc aactcacaga cacagtaaac agaatcctca      5580
     aagagaaaag ggacgggttg gttgacgccg gccacctttt cgagaccctc ttagccagaa      5640
     atagaatact aatttcagaa atacaaaatt gcatgctcac gatcacactc gcaaaaaaca      5700
     atatgataaa tccagttatt tttaatcaca atgaccttaa atctatcttc gacgaacagc      5760
     tcacagaggt ccccatagtt agtcttatgg atgtatctaa gattaagatt tttcaatcta      5820
     atatttttat ccatgtaatt gttcaatatc ctaaagttaa gtttatttgt aaaaaagtcc      5880
     tgctctttcc tgttgctcac taccatacca tgttacaaat tgaagaaaac gtcttggcgg      5940
     aatgtgatga cggagtccta gcagtttcag attgcgcgtc taccaacttg gccacgttct      6000
     gcaaaaaggc ggttcacgac acctgcgcca ggcagttaca tgctggcggt gtggctacat      6060
     gccggacgca gcccagcaat ctagagcccc ttacaatcgt ggacgatgga gtaataatcg      6120
     tcaatgagaa atttacgagg attgctatcg atgacgggcc tacaacaacc gtaataggga      6180
     cccaccttat taccttcgaa cggaaggcag tcatcaacgg ctcagtgtat ttgaacctca      6240
     attacgctgt ggataagagc cctggaatcg cggcctcccc attgatcaac atcaccggcc      6300
     atgatcaaat actgagtctg ccgctactac agcggatgaa cgagcacaac ctgcggctga      6360
     tgcaggagct cagagaggac gtgtccgcgg gaggtgcacc aaaaatctgg ttcgtcgtgg      6420
     gagtcgccgt tagcttcacg ttatgcggct tggtcctgct gcaacaacac tgcaggcgca      6480
     aacgggagac atcccagttg caaaaatcca ttgacgaatt ggctgtcacc gaggacggcg      6540
     tctaatttaa ggggggagt                                                   6559
//
ID   Gypsy-10_DTa-I repbase;    DNA;    INV; 5636 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.08, Created)
DT   14-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DTa_;
KW   Gypsy-10_DTa-LTR; Gypsy-10_DTa-I.
XX
NM   Gypsy-10_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5636
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1614-1614 (2012).
XX
RN   [2]
RP   1-5636
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   Positions [6497-6988] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           820..2277
FT                 /product="Gypsy-10_DTa-I_1p"
FT                 /translation="MGLDRSPSKGSQEATKPVCPICKAEIKTTSEHFETTC
FT                 HHEFHKKCIDAXFKKSDLCPVCKVSCRPVVEKGLQTRSQSKGRQQEVADNT
FT                 PGPSGSAQSGNNSVTDQATAINTVTMVSMERRLFSLLSEKITDLIQNTVEE
FT                 SVRRLITTPPNSAVGGEERPATPPPVDGVGSEPVSGVEQIQNRHRLMPNIG
FT                 SPGSHRSNMSDLLTRPDKVVHILNGWKIKYSGSGVSIDNFIYRVEALTHQT
FT                 LDGNFSVLCRNASVLFEGKANEFYWRYHKSVTEVRWDLLCSALRMQFRQKR
FT                 DDIDIEELIRNRKQKPSETFDSFYDSVNILVDQLELPWSSRKLVRVLKNNL
FT                 RPEIRHELLNVDISTVSELRETCRRREAFLDDVKRAHGYSKGNPFRRDISE
FT                 LIPESDSHKDSESENDLEVDAFSLKCWNCRKDGHIYQDCLADKRLFCYGCG
FT                 ADNTYKSNCVKCAKNSKSGASKLPYKPKTSNTYRNQSTMTD"
FT   CDS           2163..5561
FT                 /product="Gypsy-10_DTa-I_2p"
FT                 /translation="HLQVKLREVCKKLQVRRFEVAVQTENFEYLSQSVNND
FT                 RLDVDAPFIAPQIIPDVPKSNVSSLLHCKVKTLPDISNPEFCSNPPLERFK
FT                 SRSSKRIKSFWQNIRTCRLGLKYICSVPIGTRDPRPFLPIRLLDRTVYGLL
FT                 DSGASISCFGGDLASELMKKDDAYKSLNVSATTADGSPQRIVGKMKVDIEY
FT                 GNIQKSLNIYIVPSLKQDLYLGIDFWRLYDLLPRNLNISELESKESSKVSS
FT                 EVEVDQHDLSEAEKLQLANVINCFPSFTQEGLGKTSLITHSIDVGSAKPIK
FT                 QRHFPVSPAVEKSMYAEIDRMLQLGVIEESESAWSSPIVMVTKPGKVRICL
FT                 DCRKVNSFTEKDAYPLPQISGILSRLPKAEYITSLDLKDAYWQVPLEVQSR
FT                 DKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFVYLDD
FT                 LLVVSSNFENHLDVLREIAVHIKRAGLTINIGKSHFCMRRVRYLGHIIGDG
FT                 GIRTDPEKVKAITEFPVPKTLRGLRSFMGLCGWYRKFVPNFASLASPLTDL
FT                 MTTKRRFSLTPDALKAFELLKSRLSEAPVLCSPDFSKPFAIHCDASKSGVG
FT                 AVLVQVSSEGDERPIAFISKKLNRAQRNYTVTEQECLAAIVALKNFRAYVE
FT                 GHDFTIITDHASLKWLMSNHDLSSRLARWALALQRYRFKIEHRKGTMNVVP
FT                 DSLSRVNEDEVAAVDLQEGLLVDLTSNHFKSPAYKDLIAKVEEKKANFPDL
FT                 KTEDGYLYRKAEHLTGEQVHDEYAWKLWIPSELVPEVLFQAHNSPLASHGG
FT                 IHKTVERVRRYYFWPRLVPDVKAYINACETCKSTKPPNHVLRPPLGKAPET
FT                 VRLFQRIFIDFLGPYPRSRSGNIGIFIVLDHFSKFVFLKPVKKINASVVIK
FT                 YLEGELFMTFGVPETIVSDNGSQFRSEAFQKLMKQYEISHILTAVHSPQAN
FT                 ASERVNRSVISGIRAYLRPDQKDWDEYLNKICCALRSSIHSSIGTTPYYMA
FT                 FGQHMVTXGSTYALLRRLNMLDDRSLXFNRQDSFEIIREEAGKQMQKAHDV
FT                 NEKRYNLRXREVSFVQGQEVFRRNFKQSCFQTGYNAKFGPSFVKARIRRKI
FT                 GNSYYELEDLQGRLLGNYHAKDIRQ"
XX
SQ   Sequence 5636 BP; 1672 A; 1193 C; 1213 G; 1547 T; 11 other;
     gatattattc attattatta ataagaaaag tggcgcccag acgtgtgtgg cctttgtgag        60
     tacagtattc actcattaag actcaccgat agataaattc aaattctttt ctttatttct       120
     tacaaatatt tcaacattta actttcattt ctaatcacaa cttccttctt tgatttataa       180
     ttgactggat aacagaggta gaagcaccag tcttctttct ggcctcaatt agaaatcagg       240
     gatagtagtt tccttcatca ggctgtgatg ttgtttaaaa cttagtccga tgaaaataca       300
     gaacgtatac aacttcggtt gatcttctgg ctcggactgg tttaccactt cactgtctca       360
     accactcttc ggtaaataaa agttttcgtt aacacaggcg ttacggaata tagaggcata       420
     gaattccagt gccctatcca cgaatgatta acgggagagt ttatttacat ttcgccttag       480
     agagwttaga tttccgcaat atgaagmagg aatattagag watccatttt cgaagaatta       540
     aaatatctag tccgcttcat actgttagaa acctaatcam ctccctttta atctacatct       600
     ataaactatt catccttctc gagaacgtta aagaagtaaa tattattctt cctacgatac       660
     gcagacatca agtgcagagt ttaattgaag ttattaaaga ataaataatc gcacggtaga       720
     ttattacttg ttgaagtaat tttataaaga cattttctaa aagttttatt ttttttcgta       780
     ttgctacctt tttwtctaac tttggaaatt atcgtaaaca tggggttaga ccgatcacca       840
     agcaaaggct cacaggaagc caccaagcca gtctgtccga tatgcaaagc tgaaattaaa       900
     acaacttctg aacattttga aaccacgtgc catcacgagt ttcataagaa gtgcattgac       960
     gcgcwtttca agaaaagtga cttgtgccca gtatgcaaag tttcctgcag gccagtggtc      1020
     gaaaaggggt tacaaactcg gtctcagtct aaaggtcgcc aacaagaagt agccgataat      1080
     accccaggtc catctggaag cgctcagagc ggcaacaata gtgttactga tcaagcaaca      1140
     gcaataaaca cagtcactat ggtctccatg gagcgaagac tattctcgct tctttccgag      1200
     aagattaccg atttaatcca aaatacagta gaagaaagtg tacggagatt gatcactact      1260
     ccgccaaatt ccgctgttgg cggcgaagag agacccgcaa ctcctccacc ggtagacggg      1320
     gttggtagcg agccagtttc tggtgtcgaa caaattcaaa acaggcatcg gctcatgccc      1380
     aacataggtt ccccaggctc tcaccgaagt aacatgtccg atctcctaac tagacccgac      1440
     aaggtcgtcc atattttaaa cggatggaaa attaaatatt cggggtcagg tgtttcaata      1500
     gacaacttca tttatagagt tgaggcgcta acgcatcaaa cgttagatgg aaatttctcg      1560
     gtactttgcc ggaacgctag cgttctcttt gagggcaaag caaacgaatt ttattggcgt      1620
     taccataagt cggtaaccga agtccgctgg gatttgctat gttctgcttt gcgcatgcaa      1680
     tttcgccaga aaagggatga cattgacatc gaagagttga tccgaaacag aaagcagaag      1740
     cctagcgaaa cctttgatag cttttacgat agcgtaaata ttttagtcga tcaactagaa      1800
     ctaccctgga gctcgcgaaa acttgtccga gttctcaaaa ataacctaag gcctgagata      1860
     cgacatgaac tactgaatgt cgacatttca acagtctcag agttaagaga aacctgtcgt      1920
     cgacgcgaag cttttctcga cgacgttaaa cgcgcgcacg ggtatagtaa aggtaaccca      1980
     tttagacgcg atatctcaga actgattcca gaatctgatt ctcataaaga ttctgaatcg      2040
     gaaaacgatc tagaagtaga cgcgttttcc ttaaaatgct ggaattgccg aaaagatggm      2100
     cacatttacc aggattgttt agccgataaa cgactttttt gctacggctg tggagcagat      2160
     aacacctaca agtcaaattg cgtgaagtgt gcaaaaaact ccaagtccgg cgcttcgaag      2220
     ttgccgtaca aaccgaaaac ttcgaatacc tatcgcaatc agtcaacaat gaccgattag      2280
     acgtggatgc accattcatt gcaccacaaa ttatccctga cgttccaaaa agcaatgtca      2340
     gttctttgct gcattgtaaa gttaaaaccc tacctgatat atcaaatcca gaattttgtt      2400
     ccaaccctcc cttggaaaga ttcaaatctc ggagttctaa aagaatcaaa tcgttttggc      2460
     aaaacattag aacctgtcgg ctgggattga aatatatctg ttcagttcct atcggaacac      2520
     gagatcctag accgtttttg ccgattcgtt tattagatcg cactgtgtat ggtttacttg      2580
     actccggggc atccataagt tgttttggag gtgatttagc tagcgaactc atgaagaagg      2640
     atgatgctta caagtcgtta aacgttagtg ctaccacggc agatggaagc ccacaacgga      2700
     tagtaggcaa gatgaaggtt gacatagaat atggaaacat tcaaaagtct ctaaacattt      2760
     atattgtgcc atcactaaaa caagatctat acttgggtat agacttttgg aggctgtatg      2820
     atcttcttcc cagaaatctg aatatatccg agctagaatc taaagaatct agcaaagtca      2880
     gcagcgaggt cgaggtagat caacacgact tgtctgaggc agaaaagtta caattagcca      2940
     atgttatcaa ttgttttcct tcatttactc aggaaggcct tggcaagact agtttgatca      3000
     cacattcaat tgacgtgggt agtgccaagc caattaaaca gcgccatttc cctgtctcac      3060
     ctgctgttga gaagagtatg tacgctgaaa tagacagaat gttgcaatta ggggttattg      3120
     aagagtcgga aagcgcctgg tcctctccca tagtcatggt cacaaaacct ggcaaagtca      3180
     ggatttgcct agattgccgg aaagtcaata gttttaccga aaaggacgcc tatccgcttc      3240
     ctcaaatcag cggcatctta agtcggttgc cgaaagccga gtatattact agccttgatt      3300
     tgaaagatgc ctattggcaa gtgccgttgg aagttcaatc ccgagacaag actgcattta      3360
     cagtccctgg taggccactc taccaattta aagtaatgcc ttttgggctt tgcaatgcca      3420
     ccagcacgat gtctcgcttg atggacaaag tcgtcccagc gcatctcagg aacgaggtgt      3480
     tcgtatactt agatgacctc ctggtagtat cgtcaaactt tgagaaccat cttgacgtac      3540
     ttagggagat tgccgttcac atcaagcgtg caggattgac aatcaatatt ggcaaaagtc      3600
     atttctgcat gcgacgtgta cgttatctgg ggcatatcat tggcgatggc ggaattcgaa      3660
     cagatcctga aaaggttaaa gcaatcaccg agtttcctgt cccgaagacc ctgcgaggtt      3720
     taaggagttt tatgggttta tgtggttggt accgcaaatt cgttccgaat tttgcctctc      3780
     tcgcttctcc tttaaccgat ttaatgacaa ccaaacgaag gttcagtctt acaccagatg      3840
     ctctgaaagc mtttgaactc ttgaagagtc gtctcagcga ggctccggtg ttatgtagcc      3900
     cggacttttc taagccattt gccatccatt gcgatgctag caagtctggt gtcggtgctg      3960
     tgttggtaca ggtttcctcc gaaggagacg aacgccctat agcctttatc tcgaaaaagc      4020
     tgaatcgagc tcaaagaaac tataccgtga ccgagcagga gtgtttggcg gcgatagtag      4080
     ccttgaagaa ttttagagct tacgtggaag gacatgattt cacgatcatt accgaccacg      4140
     cctcgcttaa atggcttatg tccaaccatg atctcagttc tcgtttagct cgatgggcgt      4200
     tagctttgca aagatatcga tttaaaattg agcatcgcaa aggaacgatg aacgtggttc      4260
     ccgattcctt gtcccgcgtt aacgaggacg aagttgcggc agttgatttg caggaaggtt      4320
     tgctagttga tttaacttcc aaccacttta aatctcctgc ttacaaggat ctgatagcca      4380
     aagttgaaga gaagaaagct aattttcctg atcttaaaac agaggacggg tacttgtata      4440
     gaaaggcaga acatttgaca ggagaacaag tacacgatga atatgcatgg aaactttgga      4500
     taccatcaga gctggtcccc gaagttcttt ttcaggctca caacagtccg ttggcttccc      4560
     atggcgggat acacaagact gttgagcgcg ttaggaggta ttatttttgg cctcgcctcg      4620
     tgcctgacgt gaaagcatac attaatgcct gtgagacatg taaatcgact aaaccaccaa      4680
     atcatgttct cagaccaccg ttaggaaaag cgccagaaac cgtacggctt tttcagcgta      4740
     ttttcatcga ctttctcgga ccttacccac gttcaagaag tggaaatatc gggattttca      4800
     tagtcctcga tcatttttcg aagtttgtat tcctcaaacc ggtaaagaag ataaacgcaa      4860
     gcgttgtaat aaagtatctt gagggggagc tattcatgac attcggagtc cccgaaacca      4920
     ttgtgtcaga caacggatcc cagtttcgct ccgaagcgtt tcagaagctg atgaagcagt      4980
     acgaaatctc acacattcta acagctgttc attcaccgca agccaacgct tctgaacgcg      5040
     tgaatcgttc agtcatttca gggattagag catacttaag accagatcaa aaggactggg      5100
     acgagtacct taacaagata tgttgtgctt taagatcttc aatccattca agtataggga      5160
     ccacaccata ctatatggcg tttggccaac atatggttac tkctggttcg acttacgcat      5220
     tgttgaggag gttgaatatg ctagatgacc gatctctcwt gtttaatcga caagattcgt      5280
     tcgaaataat tcgtgaggaa gctggaaagc aaatgcaaaa agctcacgat gtgaacgaaa      5340
     aaaggtataa cttacgckca agagaggtat cgtttgtaca gggtcaagag gtatttcgcc      5400
     gcaatttcaa gcagagttgc ttccaaacgg gctacaacgc caagtttgga ccgtcatttg      5460
     taaaagcccg tattaggagg aaaataggta actcttacta tgagcttgaa gacttacaag      5520
     gtcgattact aggcaattat cacgccaagg atattcgaca ataaagtcac tccaggcgtt      5580
     atcagtctag ggtatctaga actaaatacc ctagtctgat tgtagcgggg gggttt          5636
//
ID   Gypsy-10_DTa-LTR repbase;    DNA;    INV; 2312 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.08, Created)
DT   14-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DTa_;
KW   Gypsy-10_DTa-LTR; Gypsy-10_DTa-I.
XX
NM   Gypsy-10_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2312
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1615-1615 (2012).
XX
RN   [2]
RP   1-2312
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2312 BP; 716 A; 486 C; 419 G; 691 T; 0 other;
     tgtaacggcg cctgaagcga cttggtttag aattttcgcc taaaagctga ctgcaaaata        60
     gttaaagcgg ggtttatctt aggtagttac caaccattcc agatttcgaa acagctgttt       120
     cagagatgca gtggaaagct cgattctggc acctgtcata tgcatctgcc acgaacttcc       180
     gcccataccc taaccgcacc tatccaaaat ccggtagcgt tcttctcttt tcgaccaccg       240
     tgatagccag acgtacaatc cgtccgcgtt ttcaattcgc tatttgaaat ttttgaaatc       300
     atagtgaaca taacgcgaaa cgggctaaaa tatcactccc aagcagcaga gaagacataa       360
     tttgtgtttt gcgggttaca gaagaattct gatgtaagtg aaaactcaca aaaggcagaa       420
     attttccaat ttaaccccaa aatattctct agatatcttt cctccgggtc acgattggcg       480
     taaaagcctc gtctaagatc cattttactg ccgccgcaga gaagtgccct ctggggctta       540
     taaattggaa tacctcgctg gaaacgacgt ttggaaaatt ccaaatcacc cttaccgtac       600
     ggcgggggca tgatcagcag gtagataaat attatttcgg tgggaaaacc atgagcttgt       660
     gcttataagg ctttaatttg ttctagattg tgccccacat taatattggc gtttaaataa       720
     gcaagatcca aggcgtttaa aaaaggagat tcgacccaca taacctacag cgaaggcatc       780
     acgtggcatg gcagtctaaa ccttattttt tttaagtgat cgcttatcta acctaaagcc       840
     caacaaccat gtttttccgg gaaataaagt agatgtcagc cagctaattc ccgaaaagaa       900
     tcttacctac acaaaccaat aagtgataat cgcgcgccta atgctttaaa tttccaaatt       960
     caccggttgg aatctgaatt ccacgatcca cagtccactg ggttccatta cctaattcca      1020
     ataagccgaa acggtgaaga aaattcggta taccttcgat tttgccacgg agacctcgcg      1080
     cttggaaagc tatgccttcc cataactaaa cctggaaggc gacgttcgtt ttttttgtag      1140
     aataaagtag agtaatatat aaatctaatt aagaatatgt aaagaaattt tgtaaagcgg      1200
     ttcaagattc cagttaggtg acgttatcgg tttcgggcct cagaatttca atctaaataa      1260
     cctcaaaagg gtcgcgagtg ttaagagatt taattgaata ttattattta accccatggc      1320
     gaccaagttt gcctgttaca gccacctgcc cgggagatcg atctttcgcc gctggaatgc      1380
     ctacaaaaat cagtgagttt taatcttaca tttatctttg ccaaatatat atattcaaaa      1440
     tatctcacac ttgaacaaat accccttgat taataataaa aataaataaa ccctatggaa      1500
     aataaagtga attaaacaag agcccattgc cgatcgcgac atcttatgaa taacaagtta      1560
     attaaataga ttttggctgg aatgaaaaga aacatgctga aattataacg aagatttaat      1620
     tgaatatttg aacatcccta attatcgaat tttataattt aaaattatct ttattttata      1680
     tttctaatcc tttatttttt ttattatata catttttatt tactataccc ttgcgtcatt      1740
     tacaattaaa tcttgaatta cctctattta aaaattgtat aagagcagcc atattatatt      1800
     ccgattattt ttggaaaacc ttgtaatgaa tacaaacttt ataaatgaaa atgtgtgtgg      1860
     aatttcagat cttgattaaa tgaacacgaa tttaaacatg aaccttgagt agttcaatat      1920
     tttaactctg ccgatgattc tgcggtcgta ggggaaaagg ggtcaccaga gccatgctcg      1980
     aggatggtga tcataggttg ggtgggcatc ccgcgaccac tacaacatct gtggcatcgc      2040
     gtttacttac ttttttttcg aactttacta ttccttacta tcttttcctg aatctgtcta      2100
     tcattctctt ccggttttga aatctcgcct ttcttctgtc gtaagcatgc tcaaatcttg      2160
     tcttaaaaat aataatgtgt agctagtgtg ccggtccgtt taagcaagac caccaccccc      2220
     aaagccgacg agcgagagcc ggacccatag catgcacccg cacggacgga tcgtaggact      2280
     caccgcaccc aagttactcg ttacacgcta ca                                    2312
//
ID   Gypsy-10_DVir-I repbase;    DNA;    INV; 5579 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DVir_;
KW   Gypsy-10_DVir-LTR; Gypsy-10_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5579
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1820-1820 (2012).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           581..2152
FT                 /product="Gypsy-10_DVir-I_1p"
FT                 /translation="MAVRRSTESIVAAINAQDPFCGICHEQLQAEQLSATT
FT                 PCQHRFHDVCISNTLKTTPKCPVCEADCNPGQLIFMNNTLAAELHSAGNAE
FT                 TDETLSRNTLPCQDGSTTTGIRRGQRFGKGRGATPKRSMQTRSMNRNHREY
FT                 LGSCMSLGSNGNKSVDNGPNVETITYINEALQSQQRTLIAELKNVIKASVE
FT                 QSLQEKLATLNVRSEQAESTRSRLVQSPRGLGADTLPNSAQNSDIPLDCGP
FT                 YSPRGSNRSNSSLSSEKAASIMQTWRLKFDGSKDSMQIDEFLYRIRSLTAQ
FT                 NLNGDYRLLCDNLHLLFFGKANDWFWSFHKKNPQYTWLAFCTDFRLRFEDV
FT                 KDDFDLWELIRKRRQKDQETFDDFQSAIEGLVSQLSNEISEDKLVDLLKRN
FT                 ARTALRYELLHLKIRTRAELREEVKKHESFCRETGSFPNRTKYGRGNVSEL
FT                 LENNDIEDNISEIQNKKIVCWNCDKVGHRFDDCMGERRIFCYGCGAKNTFK
FT                 PNCSKCNLLGNRKRDAQTNTSLTHPTKE"
FT   CDS           2083..5511
FT                 /product="Gypsy-10_DVir-I_2p"
FT                 /translation="MQSFGKPEAGCADQHQFDASHKRIKSLPEIQSYGSLE
FT                 QSTPNTIFTTYMANTCSVAETATQTDIENKYVPYHIRVKHYLDTRRRIFSS
FT                 IEPIEFLSRPKRSTVRLRKFWKNIKSLRKKLVQSVFMSSDNRLYTELSLEG
FT                 EKYVALLDSGATISCLGNVAAKSLLSHPKARKCSGSIRTANNAICPVVGKL
FT                 TLKVEFRKQVHNVDFYVIPDLKQDVYLGINFWQDFGLLTNLIRPDESVNEL
FT                 DNSNEQDIQETAKMHQLTAEEKSRLNSIISNFYSYEKEGLGRTELIEHRIE
FT                 IDNVTPVKQRHWPISPAVEKLMFDEIEKMLALDIIEVSHSPWSSNCVLVQR
FT                 KDKNRLCLDSRVINKYTRKDAYPLPHIDGILSRLPPAKYITGLDMKHAFWQ
FT                 IPLEEKSRQYTAFTVPNRPLFQYKVMPFGLCNAPQTLCRLMERVIPAHLRT
FT                 RVFVYLDDLLLLSEDFDSHMLLLQEVALRLRKANLTINIAKSKFCMREIKY
FT                 LGFIIGYGQLKTDPSKIQAINEFPVPKSVKQLRRFLGLAGWYRRFVNHYAT
FT                 VSFPLTELLKKSKVLKWNTDADSAFNTLKTLLTSAPVLATPDFSKPFRLVC
FT                 DASTTGLGCVLAQLNEQEEEAPIAYMSEKLSKAQRNYSVTDLECLAVIRGI
FT                 FKFRAYIEGQDFEVITDHASLQWLMRQKDLRGRQGRWVIKLQGFKFKVSHR
FT                 SGTQNVVADALSRQNETELAEFEEQGPIVDLSSPEFKSPNYLDLIDSISSN
FT                 QSRLPDLQIIDGFIYKRTEPATGYSIQEKQSWKLWIPSSLALQVIERAHDP
FT                 PNAAHSGIGKTIEKLKRYLFWPKMSAQIHEYIVNCKVCRQTKSPNVVLRPP
FT                 MGKPMTSERPFQKLYMDLLGPYPRSKNGNIGLLMVVDHNTKFHFMRPLRAF
FT                 TTNKIIDYLENTLFCTFGVPETILTDNGSQFISSVFKAFLTRYGIIHIRTA
FT                 IYSPQSNASERVNRSVLAAIRAYIGKDHSNWDKKLYAICAALRASVHQSTG
FT                 YSPYFLAFGQNMMLNGKDYDLLKRLNLLSEDTAIERPAALQVIRQIAKDNV
FT                 AQSHNRNAKIYNLRSRNISLTAGTKVFARNFCQSNAQKKFSSKLAPVFIPA
FT                 IVVQKVGPAYYQLANETGKCVGTFHLKDIQTSNKF"
XX
SQ   Sequence 5579 BP; 1816 A; 1134 C; 1156 G; 1473 T; 0 other;
     tatatggcgc ccaacacgtg ggaccctagc aagaacgtaa aacttttact tcttgcgtaa        60
     gcacgactaa cacctagtgc acaacaatcc ccaatcgaaa ctcgaagtta taccatatca       120
     attactacct attatttttt aattaccctg ttaggcccct ttctcgggaa aatacgttgt       180
     gttcagacag tagttagttg taggaatttg cgattgtaat tcaggcattg ctggattagt       240
     cgaccacaat taattactag tactttaagc agcgggtaag atcggaaaag agggaataat       300
     aatcaaattt gggttaattg tttcaaggac tatttggaat tacaacaaac tggaaatatt       360
     tcggatgttg tctagtagtc catgagcagt aaaaatccaa atcagaaata gactccagta       420
     aaataaatag cacaaattca actactcagg tttgcttaag gattgtaagc aataacgtgt       480
     gggaaaaaga cagatagaat aaataaccaa gacttaataa tacaagtcct atttagtttt       540
     ccttttgttg tttggaaaca agcaaaagtt tgcattcatt atggcagtga gacgaagcac       600
     agagagcata gttgcagcga ttaacgcgca agatccattt tgtggcattt gccatgagca       660
     attgcaagca gaacagctat ctgcgactac tccttgtcaa caccgttttc acgacgtttg       720
     cataagcaat acactaaaga caaccccaaa atgtccagta tgtgaggcag attgcaaccc       780
     agggcaacta atatttatga acaatacact ggcagcggag ttacactcag ctggtaatgc       840
     tgaaacagac gaaactctat cgcgaaatac tctaccttgc caagatggtt cgactactac       900
     aggtatcagg agaggtcagc gattcggaaa agggcgagga gccacgccca agcgaagtat       960
     gcaaactagg tctatgaatc gaaatcatag agaatattta ggtagttgca tgtctttagg      1020
     cagcaacgga aataagtcag tggacaatgg tccaaatgta gagacaatta cctatatcaa      1080
     cgaagctcta caatctcagc aaaggacttt aatagcagaa ctcaaaaacg ttattaaagc      1140
     ttctgttgaa caatcactgc aagagaagtt agcaacatta aatgtacgaa gtgagcaagc      1200
     tgaatcaaca cgctctagat tagttcagtc tccaagggga ttaggtgctg atactctccc      1260
     taatagtgcc cagaactctg acatacccct tgactgcgga ccatacagcc ccagaggtag      1320
     caatcgatca aactcaagtt tgagttcaga aaaagcagct agcattatgc aaacctggcg      1380
     acttaaattt gacggttcga aagactctat gcagatagat gaattcttgt atcgaattcg      1440
     ttcattaacg gctcaaaatt tgaacggcga ctataggctg ctttgtgaca atcttcattt      1500
     acttttcttc gggaaagcca atgattggtt ttggagcttc cacaagaaaa acccacagta      1560
     tacctggttg gctttctgta cggatttccg acttagattc gaggacgtta aagacgactt      1620
     tgacttgtgg gaactaatta ggaaaagacg ccagaaagat caggagacat ttgatgattt      1680
     tcaatcagcg attgaaggcc tggttagcca attatctaac gaaataagcg aagacaagct      1740
     tgttgaccta ttaaaacgca atgcgagaac agcgctcagg tacgaactat tgcatttgaa      1800
     gattagaact cgagcagaat taagagagga agttaagaaa catgaaagtt tctgtagaga      1860
     aactggctcg tttcccaatc gaaccaaata cggtagaggt aatgtctctg agttactgga      1920
     aaataatgat atagaagata atatttcaga aatacagaac aagaaaatag tgtgctggaa      1980
     ttgcgataaa gtgggacacc gattcgatga ctgcatggga gaaaggcgta tattctgcta      2040
     cggttgcggt gctaaaaata cttttaaacc caattgtagc aaatgcaatc ttttgggaaa      2100
     ccggaagcgg gatgcgcaga ccaacaccag tttgacgcat cccacaaaag aataaagtcc      2160
     ttgccagaaa tacagtcata tggtagtttg gagcaatcaa ctccaaatac tatatttaca      2220
     acttatatgg caaatacatg ttcagtcgcc gagactgcaa ctcaaactga tattgaaaat      2280
     aagtacgtac cgtaccatat tagagtaaaa cactatcttg acacacgaag acgaattttt      2340
     agcagcatag aacccatcga atttctcagt cggccaaaac gctctactgt tcgacttagg      2400
     aaattctgga aaaatattaa aagtcttcgt aagaagctcg ttcaatcagt gtttatgagc      2460
     tcagataacc gcttgtacac tgagttaagc ctagagggag aaaaatatgt agcattatta      2520
     gattccggag cgacgattag ttgcctcggt aatgttgcag ctaagtcact gttgtcacat      2580
     cccaaagcgc gcaaatgctc tggatcaatc cgaacagcta acaacgctat ttgcccagtg      2640
     gtaggcaaac tgacacttaa agttgaattt cgaaaacaag tgcataatgt tgatttttat      2700
     gttatacccg atttgaaaca agatgtttac ttaggcataa atttttggca ggactttgga      2760
     ctgttaacga atttaattcg tcctgatgag tccgtaaatg aattagacaa cagtaacgaa      2820
     caggatatcc aggaaacagc gaaaatgcat cagctaaccg ctgaagaaaa gtcacgatta      2880
     aattcgatca tttctaattt ctattcttat gaaaaggaag gattaggacg cactgagtta      2940
     atcgaacatc gcattgaaat agataatgtg acccccgtca aacaaagaca ttggcctatt      3000
     tcgccagccg ttgaaaagct aatgtttgac gagatcgaga aaatgctagc tttagatata      3060
     atagaggtat cgcatagccc ctggagcagc aactgcgtcc ttgtgcaaag aaaggataaa      3120
     aacaggctgt gtctagattc tcgagtcata aataagtaca ctcgtaaaga tgcgtaccct      3180
     ctaccccata tcgacggaat tcttagtcgt ctgccgccgg ctaaatatat aacgggcctc      3240
     gatatgaagc acgcattctg gcagataccc ctagaagaaa aatcacgtca gtataccgct      3300
     tttacagtcc ctaatcgtcc attatttcaa tacaaagtaa tgccgtttgg attgtgtaac      3360
     gctcctcaaa cgctttgtag actaatggaa cgcgtgatac cagcccattt gcggacccgc      3420
     gtatttgtct acttagatga tttacttctg ctatcagagg acttcgattc gcatatgttg      3480
     cttttgcagg aagtagcgct gcgcttgcgt aaagcgaact tgacaatcaa catcgcaaaa      3540
     tcaaaatttt gtatgcggga aattaaatat ttgggcttta taattgggta tggtcaacta      3600
     aagacggacc ctagcaaaat acaagctatt aacgaattcc ctgtaccaaa aagtgtaaaa      3660
     caactgagac gttttcttgg actcgctgga tggtatagac gtttcgttaa tcattatgca      3720
     acagttagct ttccgcttac agagttgcta aagaaatcga aagtattgaa atggaacact      3780
     gatgctgatt ccgctttcaa caccttaaaa acacttttaa cttctgcacc tgtattggct      3840
     acacccgact tctcaaaacc ttttagatta gtttgcgatg ctagcacaac tggtttagga      3900
     tgcgttctag ctcaactaaa tgaacaggaa gaggaggctc caatagcata catgtcagag      3960
     aaactgtcaa aggcccaacg gaattatagt gtgaccgatc tggaatgctt agccgtaata      4020
     agaggtattt ttaaatttag agcgtatata gaaggacagg acttcgaagt aataactgat      4080
     catgcttcct tacaatggct catgagacag aaggatctca gaggacgtca aggtagatgg      4140
     gtgatcaaat tacagggctt caagtttaaa gtctcgcatc gtagcggtac acaaaatgtt      4200
     gtcgctgacg cgctatcgcg tcaaaatgag acagagcttg cggaattcga ggagcaaggt      4260
     cccatagttg acctgtcttc acccgaattc aaatcgccga actatctgga tctgatagac      4320
     agtatttctt ctaaccaatc cagattaccg gatttacaga taatcgacgg ttttatatat      4380
     aaacgtactg agccagcgac gggatatagc attcaggaga aacaatcctg gaaactctgg      4440
     ataccttcgt ctctcgccct acaagtgata gagagagccc acgatccccc taacgctgca      4500
     cacagtggca tcggaaaaac gatagagaaa ctcaagagat acttgttttg gccaaaaatg      4560
     tcggcccaaa ttcatgaata tatagtcaat tgtaaagttt gtcggcaaac gaaaagcccc      4620
     aatgtagtgt tgagacctcc aatgggcaag cctatgacgt cagaacggcc atttcagaag      4680
     ctctacatgg atcttctagg gccatatcct cggtccaaga acggcaatat aggtctcctg      4740
     atggttgtag accacaatac taaatttcat tttatgcggc ctcttcgcgc gtttactacc      4800
     aacaaaatta tcgactatct agaaaacaca ctgttttgca ctttcggcgt gccagaaact      4860
     attctgaccg acaatggctc tcagttcatt tctagtgtct ttaaagcttt tcttacccgg      4920
     tatggaatca tccacattcg aacggcaata tactcgccac aaagtaatgc gagtgagcga      4980
     gtaaatagat cagtattagc ggctattaga gcctatatcg gaaaagatca ttcaaattgg      5040
     gataaaaagc tgtacgccat ttgtgctgcc ttgagagcca gcgttcacca aagtacaggg      5100
     tactctccat attttttagc gtttggacag aatatgatgt taaacggtaa agactatgac      5160
     ttgctaaagc gacttaacct cttgtccgaa gacaccgcta ttgagaggcc cgcagcctta      5220
     caagtaatcc gtcagatagc taaagacaat gtagctcagt cacataatag aaatgctaag      5280
     atatataatt tgcgcagccg aaacataagt cttactgccg gtacgaaagt cttcgcccgc      5340
     aatttttgtc agagtaacgc gcaaaagaag tttagttcta agcttgcacc agttttcatt      5400
     ccggcgattg ttgtacaaaa agtcggccca gcctactatc aactagctaa tgaaacaggt      5460
     aaatgcgtcg gtacttttca tctcaaagat atacaaacta gtaacaagtt ctaactcaac      5520
     agttattata gttatttcag tttatgtccc gctagcaagt agcgctgcat aaactgtgg       5579
//
ID   Gypsy-10_DVir-LTR repbase;    DNA;    INV; 2038 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DVir_;
KW   Gypsy-10_DVir-LTR; Gypsy-10_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2038
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1821-1821 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2038 BP; 611 A; 382 C; 392 G; 653 T; 0 other;
     tgtagtggct gctttgcact ccccaaacga atctgcttgt tgatcagctg ctctagttta        60
     gttactgctt taccgaccgc gctggaagcc aattcttcgt ttattgcaca gctgagggca       120
     tgcgcaaccg aatagggcga atagagagga aaaaggtgat aagatcaggc catagtaccg       180
     ttttaaaata taatcgcgtg atgtagagct tttgaaagct tccttatttt ttttgtcgtt       240
     gggaagtagt aaaggttaaa agtacagctc agcatgtcag atatatttga agcgcgtgcg       300
     agttaagttc ataacatttt ttctttcttt gcaaataatt tttgcaaaga catcaacgac       360
     caaggctgca attgtggtac agtttggaag tgttcttttg gtacgctaat agaaaccaaa       420
     aaccttcata acaactcgac ccactaacct aattgtgatt cggggtgacc cttaaagaaa       480
     aggtatttat atgtgctagt gttgagactt ggaactaatt aaggcttcca cagtttccgt       540
     gcctgctcag ttgactagat ttagacgtac tagtcggcac taccagaggg ggagatcgga       600
     ccagacaagg gcaacaccaa gagcacgtgt cgcacttagc aacccagcag aaccaatttt       660
     gttgctattt tacttatcag ccgctgtctt gcgaagaaca acatctggca tagcctcgga       720
     aaacggcgtc aagcgggtga aacgcttact atttatgcag caccatcggg accgcatgca       780
     ctaagcatat agtgtaacct gcagagagta acaaaggagc cgagtctgta ttacttttgg       840
     tgtacccctt tcgcttgctt agcagcattg ccatataatt ccattaattg tttaacgttg       900
     ccaagatgga cggctaatag atccttagtt ttaattttta tttcctttaa tttttttttc       960
     ttttactaat ttctttaaaa caaaaatgtg caatgaatat gcctaaataa gttaaagcga      1020
     gaggaaattc ctacaccacc gaccttgacc gttgctcata tatatatata tatatatata      1080
     tatatatata catgtgttta tatacttata aatttctttt gtaatattta gcaacagcga      1140
     tcataatcgt cgtatacatt gggcccaacg tctgcttcga aggatatcgc gtgagtaaga      1200
     gtttaaacca atgcctatag atatatgtag ttatatacac acatgaacat ttaaatgcag      1260
     ttaatttagc aagacggtaa attaattact atccgtcaag tctcaagata atgttggtga      1320
     atttctcctt ccccttaatt tctttatggg atttaaacta gttattgcac attcatcata      1380
     ttaactttgg attcaaattt tgtttggaaa ctgtatattt tttcttgtaa atagagttat      1440
     actcaccttg ctattaattg gcaacaaaat tgaacaatgc gtgaataaac gaattatatt      1500
     agcttatatg atatgatatc ctaattccat aattaattgt tttatctgtc aagtacccat      1560
     gttagccgct tgcaatttat agtgatggtt taagaacctg aaatagggac aagcatccac      1620
     attccatttt ttttttgctt gtcaaggtag ggagggtaaa gagaaagaga gacgatcaac      1680
     accttagttc tctcacttac gcgaaattga atagtttgaa tttgggtgtt cggtcggaac      1740
     acattaatgg tgcccatact agaatccggt ttttttttgt ttcaatggat ttacttaaat      1800
     caataagttt ttttttattt tttttgatcg cacttaaact atgtgtttat ggtaagtgca      1860
     aaagggaaag gaaaaaaccc cgaccagtcc gacgagctat tgtccgagta ttagcaagaa      1920
     gtgcgaacct ccaatcccta tgcacccggt taggcaacag ccacggccgt ttgtttttat      1980
     ttttggtaga tggccaaacg aaaggcaaaa actgaacccg aacctcccca ccattaca        2038
//
ID   Gypsy-10_DWil-I repbase;    DNA;    INV; 4435 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DWil_;
KW   Gypsy-10_DWil-LTR; Gypsy-10_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4435
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 8960380 8964814.
XX
CC   Positions [1975-2517] - Reverse transcriptase
CC   Positions [3535-4011] - Integrase core
CC   'TGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           400..4434
FT                 /product="Gypsy-10_DWil-I_1p"
FT                 /translation="MSTPKTKKTVAKPVVKRASQKEIGDIKHKTTSMSEKA
FT                 EHTTPIPIQSEMGDELKVCPNEYHMEEAEQSAEDKMEQIIQLLSLKIVSDE
FT                 KRDGQMKISADNFGKVVGEYDGKSIQVEKWLEIFERNAEVYDLSEKQKYCY
FT                 ARAKMSGAAQLFLETENICNYEELKSALVEEFTCNYNSADIHQLLQERKRK
FT                 NSETLHEYLLQMKKIASLGYVEDTAVISHIVNGLDIKNEYKVAMYRCKSFK
FT                 ALKEEFDIYDRLNISEKKVNKEQQKSFFKQNNGQMAKKEYCFNCGSGNHKR
FT                 NKCDAETKCFKCNQNGHISRDCPKNADKVRVISNRSRLKKIRINGVEVECL
FT                 VDTGSDVSVIKESIFKRLKNVALIEDIRVLHGLGNGTAKPIGHFTADVVVD
FT                 KLNTNQKFIVLPNNQIDYDGLLGDDLIKKFRLVGSKEGYTFLEENSDEMPL
FT                 NEFALIYNVTEESSFIAPPEYRKEVEQMIESSYHGSPEVVKQCPIQLKIIP
FT                 DGVIKPFHHSPSRLAADEASEVKKQVEQWIKQGIVRKSSSNIASRVVVVKK
FT                 KDGTLRVCVDYRKLNKMVLVDCFPVPIIEEVLEKLQPAKWFTIMDLENGFF
FT                 HVPIEEQSKPYTSFVTKEGLFEFNQAPFGFKNSPAAFIRFVNHIFQELINS
FT                 GVMQLYMDDIIVYAETPDVCMRRTKMVLETAAQFGLKMKWKKCSFMQTRIS
FT                 FLGHIVENGRIWPGKEKTAAVSRFATPKDIKSVQAFLGLTGFFRKFIPGYA
FT                 QIARPLTNLLRKEAVFYIGEAEQQSLQTLKNLLVMDPVLHIYSREAPTELH
FT                 TDASKDGFGAVLLQHFGGYLHPVYYWSRKSTEAESKRHSYYLEVKAAYLAL
FT                 KKFRHYLLGLKFDLVTDCAAFKQTTTKSDVPREVSQWILYMEDFTFNAVHR
FT                 PGDKMRHVDFFSRFPLTSMVVTTELTTRIRKAQLEDNFIKAVLEILKQQSY
FT                 QDFKLKGGLLFKVVNGNDLLAVPKLMERDVIQGAHEVGHFSTAKTMHSIQQ
FT                 QYWIPHLERKVANVIANCISCIIFSKKLGKQEGYLHCIEKGDTPLHTLHID
FT                 HLGPMDATAKQYKYVLTAVDAFSKFVWLFPTKSTGYEEVIKKITDWSAVFG
FT                 FPRRIISDRGVAFTSNAFAEFLNENKVEHVWTTTGVARGNGQVERVNRSIL
FT                 SIIAKLSAHDSAKWYKFVPQVQKAINSHVHASLKLSPFEVMFGTKMNSNAD
FT                 GRLLEVLNEELITQFNSEREELRSRAKENIENAQQAYKKNFDKRRRAEYGY
FT                 RVGDMVAVKRTQFVAGRKLASEYLGPYEVTKIKRNGRYDVRKAASVEGPNI
FT                 TSTSCDNMKLWRFISENDELLSSGTDEDEQEGR"
XX
SQ   Sequence 4435 BP; 1483 A; 786 C; 1073 G; 1093 T; 0 other;
     tttgggggct cgcccgtgtc aaatacagag acttaaaatg catatgtgat cgcgaaaagt        60
     cgagtgttgt tttgttaaaa gttgctaagt tgttatatgc tgctaaaaag ttgttaaagt       120
     tgttacaagt agctaaaaac attaagttgt gctgttcaaa acaaaacatt cttgcagacg       180
     cgtggtctta aaaatcagtt gcataaagtt gtcaaattcg aagtcgccct agcgtcgcca       240
     gaggagtcca aaagttaggc gaaagaaaga gacagaagaa aaaaggcgcg aaaaaaaaaa       300
     aaaaagaaag ttgtgaaatt cgaagtcgcc ctagcatcgc cagaaaagtc ccgaagttag       360
     gctaaagaaa gagacagaag aaaaaaggcg cgaagtacta tgtcgacgcc taagacgaag       420
     aaaacggttg caaagccggt agtaaaacgt gcaagtcaaa aagagatagg agatattaaa       480
     cataaaacaa caagtatgag cgagaaagca gaacacacga cgccgattcc aattcaaagc       540
     gagatgggag atgaactcaa agtgtgtcca aacgaatatc atatggagga agctgaacag       600
     tctgcagagg ataaaatgga acaaataata cagctgctga gtctaaaaat tgtttctgat       660
     gagaagcgtg atggtcaaat gaagatttct gcggacaatt ttggaaaagt tgtgggcgaa       720
     tatgatggaa aatctataca agtggaaaag tggttggaaa tatttgaaag aaatgccgaa       780
     gtttatgacc ttagtgagaa gcagaaatat tgctatgcca gagctaaaat gagcggtgca       840
     gcccaactgt ttttagaaac cgaaaatatt tgcaattatg aagaacttaa aagcgcccta       900
     gtggaggagt ttacatgtaa ctacaatagt gctgacattc atcagctgtt gcaagagaga       960
     aagagaaaga acagcgaaac actgcatgag tacttacttc aaatgaaaaa gatagcttca      1020
     cttggttatg ttgaagacac agctgttata agtcacatag tcaatggtct ggatataaaa      1080
     aatgaatata aggttgcaat gtatcgttgt aagtctttta aggctttgaa agaagagttc      1140
     gatatctatg atcgtttgaa catatcggaa aagaaggtca ataaagaaca acagaaatca      1200
     tttttcaagc agaataacgg acaaatggct aaaaaagagt attgcttcaa ctgcggatcg      1260
     ggaaaccata agcgcaataa atgtgacgcc gaaacgaaat gcttcaagtg caaccaaaac      1320
     ggacatattt cccgtgactg tcctaagaat gctgataaag ttcgtgttat ttccaatcgc      1380
     agtcgtttga agaaaatccg tataaatggt gttgaagtcg aatgtctggt agatacagga      1440
     tcagacgtct cagtgatcaa ggagagtatt ttcaaaagat taaaaaacgt ggcgctaatt      1500
     gaagatatac gtgtgttgca cggtctaggc aatggtacag cgaagcctat tggacacttc      1560
     actgcagatg tggtcgtgga taagttgaac acaaaccaaa agttcatagt acttccgaat      1620
     aaccagattg attacgatgg actgctgggg gatgatttga tcaaaaagtt ccgtttggtg      1680
     ggcagtaagg aaggatatac gttcctggag gagaactcag atgaaatgcc attgaacgag      1740
     tttgcactta tatataatgt cacagaagaa tcttccttta tagctccgcc agaatatcgc      1800
     aaagaggttg aacagatgat tgaaagcagt taccatgggt caccagaggt tgtaaagcag      1860
     tgcccgattc aattgaagat tattcctgat ggagtaatca aaccgtttca tcactcaccg      1920
     agtcgcctag cagcagatga agccagtgag gtaaagaagc aagtcgagca atggatcaaa      1980
     caagggatcg ttcgaaagtc atcttcaaat atcgccagca gagtagtcgt cgtgaagaaa      2040
     aaagatggaa cacttcgagt ttgcgtggac tacagaaagc tgaacaaaat ggtattggtt      2100
     gattgtttcc ccgtgccgat tatagaggag gtgttggaaa agctacaacc ggcaaaatgg      2160
     tttaccataa tggatctgga aaatggattt tttcatgtcc ctattgaaga gcaaagcaag      2220
     ccgtatacat catttgtcac aaaagagggg ttgttcgagt tcaatcaagc gccttttggt      2280
     tttaaaaact ctccagccgc gtttataagg ttcgttaatc atatttttca agaactaatt      2340
     aactctggtg taatgcagct ctacatggat gacataattg tatatgccga gacgcccgat      2400
     gtctgtatgc gaaggacaaa gatggtactc gagacggcag cccaattcgg cttaaagatg      2460
     aaatggaaaa agtgcagttt catgcagaca cgcataagtt ttcttggtca tattgttgaa      2520
     aacggacgaa tctggcctgg caaggagaaa acagcagctg tcagtcgatt tgctacgccg      2580
     aaggacataa aatcagttca agcttttctg ggacttacag ggttttttcg aaaatttatc      2640
     cctgggtacg cacaaatcgc acgtccgctg acgaacttac tcaggaagga agctgttttt      2700
     tatattggag aagcagagca gcaatcgctg caaacactaa agaatctact ggtaatggat      2760
     ccggtgttgc atatttactc aagggaagcg ccaaccgaac tccacacgga tgcatccaaa      2820
     gacggatttg gagcagtgtt gctgcagcac tttggtggct atcttcatcc agtttattat      2880
     tggagcagaa aaagcacaga agcagagtcc aagcgtcata gctattatct ggaggttaaa      2940
     gcagcctacc tcgctctcaa gaagtttcga cactatctct taggcttgaa atttgatctt      3000
     gttactgact gtgcggcgtt taagcagact actactaaaa gcgacgtacc aagagaagtc      3060
     tcgcaatgga ttttgtatat ggaagacttc acttttaatg cagttcaccg gccgggtgat      3120
     aagatgagac acgtggactt cttcagccgt tttccgctca caagcatggt cgtaacaacg      3180
     gaattaacta ctcgtataag gaaggcccag ctagaagaca acttcatcaa ggcagtattg      3240
     gaaattctaa aacaacaatc atatcaagat ttcaagctga aaggtggtct cctttttaaa      3300
     gtcgtaaatg gcaatgattt gttggctgtt ccaaagttga tggaacgaga cgtgattcaa      3360
     ggggcgcatg aagtggggca tttttcgacg gcgaagacga tgcactcaat ccagcagcaa      3420
     tattggatcc cacatcttga aaggaaagta gctaatgtga ttgctaattg tataagttgt      3480
     atcattttca gtaaaaagtt gggcaaacaa gagggctatc ttcactgcat agagaaaggg      3540
     gacacgccac tgcatacgct tcacatagat catctgggtc cgatggacgc gacagcgaaa      3600
     caatacaaat atgttctgac ggctgtggat gctttttcta aatttgtgtg gcttttccct      3660
     actaagtcaa ccggctatga agaagtgatt aaaaagatca ccgactggtc tgctgtgttt      3720
     ggcttcccaa ggcgtataat cagcgacaga ggagtagcgt ttacatctaa tgcttttgct      3780
     gagtttctta atgaaaacaa agtggagcat gtgtggacaa caacaggtgt tgccagaggt      3840
     aacggccaag ttgaaagagt aaaccgttcg atcctgagta tcatcgcaaa actgtcggct      3900
     catgactcgg caaaatggta caagtttgtg ccacaggtcc agaaagcgat taattcccat      3960
     gtgcatgcat cgttgaagtt atcaccgttt gaagtaatgt ttgggaccaa aatgaacagc      4020
     aacgcggatg gaagattatt agaggtccta aatgaagagc tcattacgca gtttaacagc      4080
     gagcgagaag agttgcgtag tcgagcaaaa gaaaacattg aaaacgctca acaagcttat      4140
     aaaaagaact tcgataagag acgtcgagct gagtatggct atagagtggg agatatggta      4200
     gcggtcaaga ggacacaatt cgtcgcagga cgcaagctgg caagcgagta tctaggccca      4260
     tatgaggtca cgaagataaa acgaaatggc cgctatgacg tgagaaaagc ggcaagcgtc      4320
     gaaggaccaa atatcacatc aacgagttgc gataatatga agttatggcg ttttatttct      4380
     gaaaatgacg agctgttatc atctgggaca gatgaggatg aacaggaggg ccgaa           4435
//
ID   Gypsy-10_DWil-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_DWil_;
KW   Gypsy-10_DWil-I; Gypsy-10_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-268
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 8960112 8960379.
XX
SQ   Sequence 268 BP; 86 A; 42 C; 58 G; 82 T; 0 other;
     tgtaagagag agagttacca gacagctggc aacgtaccat tccaggctgt ttgctgggta        60
     atacgtttgg gaagcaagtg ttcgctggga aaaagggtcg tcagttggaa gttgctctcg       120
     ttggtcgtca gccgaagtga aaagttgtat cgaagttgtg aaaaagtcga gttaaatcta       180
     ttacttgcat catatatatt tactctgtat tatcatgaac ctattaaata actattataa       240
     taaacattaa attaatctaa accttaca                                          268
//
ID   Gypsy-10_HeAr-I repbase;    DNA;    INV; 5027 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5027
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5550-5550 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..5025
FT                 /product="Gypsy-10_HeAr-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPLTRSQVLETSDNVDAASAGAAPTNVTMTHETLVHL
FT                 LREVRSSTPQNVSDSHSMFGVSGNFAKCRTRYGGRPEESLENFLDAITTYK
FT                 ECVNMTDENALRGFSMLLEGPAAVWWQGVKRSTDTWSEALSRIKGAFAEHD
FT                 PPHRLYRKLFTLVQEEEHTDLFIAKVRALLAKIPKEDLSEKVQLDMAFGLL
FT                 NPRIRKRVTRESLNSFDELLKKCRTIEDSLKESSKPRSNTAQAKPQTQTSM
FT                 RATSSSSSPQPPPPLNSAGAAESAESVAVVSKSNNKQFCVYCKRSGHSKNA
FT                 CYKLKRDNSDRDNNTSNSVIKLKSEIKCYGCGAPNVIKSKCKNCSSQQAFY
FT                 SVENASHGGVVGTLRPSSEPRGVAPRSPRRSGRQRRRARLARAARARARVV
FT                 ATQPLAPPDPSVLMPVQGNPARAAGVSCNCFLDDQCVRNTNANMCSCICLS
FT                 CCKNYKDNCNVRKHNCNVRKNFDNVRNTYTRVVSCCTDCGSNNNCNCRIHC
FT                 DSRILFDNVCNGNMCVSSFNDYGNNCNSRENIGNVCDNVPFRRPVLNISIL
FT                 GFCGTALVDSAAKSCIAGHTLYALLLRLGHPLVPSTQIVRLADGVSREMNV
FT                 LSTVVKVTLRHKTRDVKFLIFPEANNNESLLGIDFLTSFNLVFNFGESRWH
FT                 FAENDKCKFSLQFEGVSPVPACSALDVLRDDEATSLSGEQREVLARLLVEH
FT                 EDIFQPGGDATPFAEHIIDTGDHAPIAVPPYRLTPAKKDIMRVELDKMLAD
FT                 GIVEECESAWGSPALLVPKANGKVRFCVDYRKLNAVTKSDVYPMPLIDELV
FT                 QSTKKNCFMSTLDMRSGFWQVSVREQDRDKTAFLTPFGSYRFNRMPFGLKN
FT                 APSTFQRLIDRLRSGASLKDVTLLAYQDDLLLISEGFEKHISDLRAVFDRL
FT                 RMFKLRANREKCVFAREKVKYLGHVITQDGVSPDDDKVRAVLDMAAPSSLR
FT                 HLRTFLQTCSWFRKFVPSFSAVAEPLTRLLKKNQPWSWGSDQARAFEELKV
FT                 RLSSAPILIQADYSKPFVLRTDASNYALGAVLLQGEGKEERPIEYASRLLN
FT                 AAERNYSTTEREALAVVWAVERFRGYIEGHEVIIGSDHQPLKWLLTLKSPS
FT                 GRLVRWALKLQSFNIQFQYTPGKANVIADTLSRPTCKEENKDQCGVCSIVV
FT                 DLPARSPADLRCAQLEDLELKKIISELEDTSDADSVGMKRWSERGYFMQQG
FT                 VLYRYNPDVDSEEPQLVVPASLRPEILKECHDSDIAGHHGVDRTYAKVAKS
FT                 FYFPGMHRAITEYVKSCAACQRYKSSNTKPSGLLQTPVLHQRGEVLAVDLF
FT                 GPLPAGENGERWILLVEDTATRWTELYALKDATSEACARTLIEEYFLRYGL
FT                 PRRIVSDNGVQFVSAVMQQCMFVLGIGQELLPLYHPSANPAERKNRDLKFH
FT                 LSRLVESEHSSWPQHLPAIRFAMNSAVCGTTGVTPAYLMFARELRSPVEMH
FT                 HDIRSVLSKDNFVPQITPYLKRFVNSFIAVRERVEAQQDRRKECADKSKRP
FT                 GEVFEVGDQVLLKSHVLSNAAKNITSKFVPKRDGPYVVVKRVSPTAYLIGN
FT                 LDSSEEVLGKFHISELTRFHSRDVTPPRPVVQKRQRGRPRKHVCPVCSVSF
FT                 VRVHERGRSHELEGE"
XX
SQ   Sequence 5027 BP; 1239 A; 1070 C; 1308 G; 1409 T; 1 other;
     attggctgcc caacgtgtga agataacgaa cttggttata agggctgccc aacgtgttat        60
     aattggctgc ccaacgtgtg atagtaacga actcagtgaa aacttcgcgt gttattcgcc       120
     gtgaaaatgc cgttaacacg ctcgcaagtt ctggaaactt cggacaacgt cgacgccgcg       180
     agtgccggcg ccgcccccac caatgtaaca atgacccacg agactctggt gcatttactc       240
     cgtgaggtcc gctcgtccac gccgcagaat gtttcggatt cgcacagtat gtttggcgtg       300
     agtggaaatt tcgccaagtg caggacgcgt tatggcggac gcccggagga gtcgctagaa       360
     aacttcctag acgccatcac tacgtataag gaatgcgtaa atatgaccga cgagaacgct       420
     ctccgcgggt tttcaatgtt gttggaagga cctgcagcgg tttggtggca aggggtgaag       480
     agatcaaccg acacgtggtc ggaggcgctc tcgcgaataa aaggtgcatt cgccgagcat       540
     gacccgcccc atcgtcttta tcggaagtta ttcacgctgg ttcaggagga agaacatacg       600
     gatttgttca tcgccaaggt acgagctctg ctggctaaaa tacctaaaga ggatttgtca       660
     gaaaaagtgc agctagatat ggcgttcggc ctccttaacc cacgcattcg gaaacgtgtt       720
     actagagaaa gtttaaacag tttcgacgaa ttacttaaaa agtgccgtac tatagaagac       780
     tcgcttaagg aaagctccaa accacgtagt aacactgctc aagcaaagcc gcagacccag       840
     acgagcatgc gcgcgacatc atcatcgtcg tcgccgcagc cgccgccgcc gctcaacagc       900
     gccggcgccg ctgagtccgc cgagagtgtc gccgtcgttt cgaagagtaa taataagcag       960
     ttttgtgtct attgtaagcg ctcaggtcat tcgaaaaatg cgtgttataa gttaaagcgt      1020
     gataatagtg atcgtgataa taatacgagc aatagcgtta taaagttgaa aagtgaaata      1080
     aagtgttacg gttgtggtgc tccgaacgtt attaaatcga agtgtaaaaa ctgttcgagc      1140
     caacaagcat tttattccgt cgaaaacgca tcgcatggcg gagttgtagg tacgttgagg      1200
     ccgtcgagcg agccccgcgg ggtggccccg cgctcgccgc ggcgcagcgg ccggcagcgg      1260
     cgccgggcgc gcctcgcccg cgcggcccgc gcccgcgctc gcgtcgttgc tacgcaaccg      1320
     ctcgcgccgc ccgacccgtc agtgctcatg cctgtacaag gtaaccctgc gcgtgccgcg      1380
     ggtgtttcat gtaattgttt tcttgacgat caatgtgttc gtaacactaa cgctaatatg      1440
     tgctcttgta tttgtttatc ttgttgtaag aattacaaag ataattgtaa tgttcgtaaa      1500
     cataattgta atgttcgtaa gaattttgat aatgttcgta acacttatac kcgtgtcgta      1560
     tcgtgttgta ctgattgcgg tagcaataat aattgtaatt gtcgtataca ttgtgatagt      1620
     cgtatacttt ttgacaatgt ttgtaacggt aatatgtgtg tgtctagttt taatgattac      1680
     ggaaataatt gtaatagtcg tgagaatatc ggtaatgttt gcgataatgt accttttcgt      1740
     cgccctgtgt tgaatataag cattctaggg ttttgtggca ccgcgctcgt agattctgca      1800
     gctaaaagtt gtattgccgg tcacacgctc tacgctctcc tactcaggtt aggacacccg      1860
     ttagtgccgt cgacacaaat tgttaggttg gcggacggtg ttagtaggga gatgaatgta      1920
     cttagcacag tggtaaaggt gacactccga cataaaacta gagacgttaa gtttttgata      1980
     tttccggaag ctaataataa tgaaagcttg ttaggtatag attttcttac ctcgtttaat      2040
     cttgtcttca attttggtga aagtaggtgg cactttgccg agaatgataa atgtaaattc      2100
     tcattgcaat ttgaaggtgt gtcacctgtg cctgcgtgtt cagctctgga tgtgctgcgg      2160
     gatgatgagg cgacttcgct tagtggagaa caacgtgagg tacttgcccg tctccttgtc      2220
     gaacacgagg atatctttca gccaggggga gacgcgactc ctttcgccga gcatattatt      2280
     gatactggcg atcacgctcc tatcgccgtc cctccttata ggttgactcc tgccaaaaag      2340
     gacatcatgc gagtggagct cgataagatg ttggcagatg gcatagtcga ggagtgtgag      2400
     tccgcgtggg gttccccagc gctacttgtt ccgaaggcaa atggtaaggt tcgtttctgt      2460
     gtcgactata ggaagctcaa tgcggtaaca aagtccgatg tctatccgat gcctttgata      2520
     gacgagcttg tacagtcaac aaaaaagaat tgttttatga gtacgcttga tatgcgaagt      2580
     ggattttggc aagtgagtgt acgtgaacag gatagggata agacagcatt tttaacgcca      2640
     ttcggttcgt atcgatttaa tcgcatgccg ttcgggctca agaacgctcc gtctaccttc      2700
     cagcgtctaa ttgatagact tcgttccggt gccagtctta aggacgttac ccttctagca      2760
     tatcaagatg atctccttct gatttctgag ggctttgaga agcatatatc agatttgcgc      2820
     gccgtttttg atagactgcg tatgtttaaa ctgcgtgcca atagggagaa atgtgttttc      2880
     gcacgtgaga aggtaaaata ccttggtcac gttatcactc aggatggtgt gtctcctgat      2940
     gatgataagg ttcgtgctgt tttggatatg gcagcaccgt cttcgcttcg gcacttaaga      3000
     acttttcttc agacgtgttc atggtttaga aagtttgtgc ctagtttttc tgctgttgct      3060
     gagccgttaa cacgcttgct aaagaagaat cagccgtggt catggggttc agaccaggct      3120
     cgtgcctttg aggagctcaa ggttcgtctc tcctcggcac cgattcttat tcaggcagat      3180
     tatagcaagc cgtttgtgtt aaggactgat gctagcaatt atgccttagg agctgtgttg      3240
     ttacagggcg aaggtaaaga agagcgccct attgaatatg ctagccgtct gctcaatgca      3300
     gctgaaagga attacagcac caccgagcgt gaggctcttg ctgtggtgtg ggccgtcgaa      3360
     cgttttaggg gttatattga aggtcatgag gtcattatag gtagcgacca tcagccgtta      3420
     aagtggctcc ttaccctaaa gtcgccttca ggtaggctcg ttcgctgggc tcttaagctt      3480
     cagagcttta atattcagtt tcagtatacg cctggaaagg ccaatgttat tgctgataca      3540
     cttagtcgac caacctgtaa agaagaaaat aaagatcagt gtggtgtctg ttccatcgtc      3600
     gttgacttac ctgctcgtag tccggctgat ctccgttgcg cgcaactcga ggatctggaa      3660
     cttaagaaga taattagtga attagaggac acttctgatg ctgattctgt aggtatgaag      3720
     cgttggtcag aaagaggtta ttttatgcag caaggcgtat tgtataggta taatccggat      3780
     gtagatagtg aagagccgca actggttgtc ccggcttctc tgcgtcctga aattttaaaa      3840
     gagtgtcatg attctgacat tgctggtcat cacggagttg atagaactta tgccaaggtc      3900
     gctaagagtt tttatttccc aggcatgcat agagctataa cagagtatgt caagagttgt      3960
     gctgcctgtc aacgttataa gtcttcaaac acgaaaccgt ccggcttgtt acagactcct      4020
     gttctccatc agaggggaga ggtgttagcc gtagacttgt ttggtccact tcctgcggga      4080
     gaaaatgggg aaaggtggat tttgttggtc gaagacactg cgactcgttg gaccgagctt      4140
     tacgctctga aggatgctac ttccgaggcg tgtgctcgta cgttgattga agagtatttc      4200
     ctccgttatg gactgccaag acgcattgtt tcggacaatg gcgttcagtt cgtttctgct      4260
     gtaatgcagc aatgtatgtt tgttttaggt attggtcaag agttgttacc attataccat      4320
     ccgtcagcta atccagctga gcgtaagaat agagacttga agtttcattt gtctcgttta      4380
     gttgagtctg agcattcatc gtggcctcag catcttcccg cgataaggtt cgccatgaat      4440
     tcggcagttt gtggtactac tggagtaacc cccgcatacc ttatgttcgc tagggaactt      4500
     cgttcgccag tcgaaatgca ccacgatatt aggtccgtgc tcagtaagga taattttgtt      4560
     cctcagatca caccttattt gaaaaggttt gtgaattcgt ttatcgctgt cagagagagg      4620
     gtcgaagcac aacaggatcg acgtaaggaa tgtgccgata aatccaaaag accaggtgaa      4680
     gtcttcgagg tgggtgatca ggtactatta aagtcgcatg ttctgagcaa cgcagccaag      4740
     aacattactt ctaagtttgt tcctaagaga gatggtcctt acgttgttgt gaagagagtt      4800
     agccctacag cgtatcttat aggtaattta gattcatctg aggaagtttt aggcaagttt      4860
     cacatatcag aactaactcg ttttcattct cgggatgtta cgcctcctcg tcccgtagtg      4920
     cagaaacggc agagaggacg ccctcgaaaa catgtttgtc ctgtatgtag tgtttccttt      4980
     gtgcgagttc atgagcgggg acgttctcat gagctcgagg gggagtg                    5027
//
ID   Gypsy-10_HeAr-LTR repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-391
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5588-5588 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 391 BP; 78 A; 90 C; 106 G; 117 T; 0 other;
     tatagcgtgt ggctgtatgt cgcgcaagta gtttgccgcc ctattagtta gttacacgcg        60
     ccgcaagagg gcgcgtggaa ggggacgcga catcgcgcag ccgctcacgc cgacagtgag       120
     caagaagcgt gtgccgcgag tgcgcgtcgg atgcgcctcg cttgagtctc gtcatgtagt       180
     tgaatacgct cgccccattg tttcaactca gggtttagtt cattagttag ttttgtaaca       240
     ttcgtggttg ttgtccaact gtactgtttc gtttgtattt ccgtgttttc tttgcaataa       300
     acttaaactc aaacagtatc cagtggtttc cattcgttaa atagcctagt ttagtgacgc       360
     ccgtagtgtg tagggctccg ctagggctat a                                      391
//
ID   Gypsy-10_HMM-I repbase;    DNA;    INV; 4050 BP.
XX
AC   CAEZ01009965;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_HMM_;
KW   Gypsy-10_HMM-LTR; Gypsy-10_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4050
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009965; Positions    5913    9962.
XX
CC   Positions [3085-3489] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1525..3489
FT                 /product="Gypsy-10_HMM-I_1p"
FT                 /translation="MLSQGTARSSNSSWSSALHLVKKKDDGWRPCGDYRAL
FT                 NARTVPDRYPIRHIQDFSYQLSGCTVFSTIDLVKAYNQIPVHVNDIHKTAI
FT                 TTPFGLFEFPYMTFGLRNAAQTFQRFMDEVLRDFDDFCFGYLDDILVFSSS
FT                 EEQHQRHIRLLFTRLKEYGVLINTSKCVFGQRQVKFLGYLVSDSGTQPLET
FT                 NVKSIEECNVPKTAKELRRFLGMFNFYRRFIPGAANIQAPLDAALLGPKMK
FT                 GAKPITMTPEMMEAFQKCKTCLSQAALLAHPDPSAELAFATDASDVGIGAV
FT                 LQQRVNNVWQPLGFFSKKLTSAQKKYSPYDRELLAIYEAIKYFRHMVEARN
FT                 FVIHTDHKPLTYAFNINREKCSPRQYRYFDYISQFTTIIQYLPGRLNVVAD
FT                 TLSRLEEVSRSIDYQALALAQDTDPELLGLLQKGSSLKLVKVDLPHCNQKL
FT                 YCDVSMSSPRPFITEKFRRQVFETLHSLSHPGRTATVRLVTQRFVWPGIRK
FT                 DCREWTRECILCQKSKVHRHTLAPLSSIPTPTSRFEHIHLDIVGPLTVSSD
FT                 FRYCLTVIDRFTRWPEAFPLKDITADSCAAALLSGWIARFGCPLRITTDRG
FT                 RQFESHLFKALSAMVGAHHFTTTSYHPASNGLIERLHRQLKAAIMCHPSST
FT                 WTEHFP"
XX
SQ   Sequence 4050 BP; 1120 A; 985 C; 872 G; 1073 T; 0 other;
     accgctatat tggtgacccc taaattggtg agcactacaa taaatacctg cgtttactgc        60
     tggcaagaag atttaaaacg gcaagaggcc attttgacga ttttggcaag tgacctctga       120
     tacaagatgg aggacgcgac tacatccaac gtgtgcagaa ttggcgtgcg tattccacca       180
     ttctggccgg aagaaccagc cctttggttt tcacaaattg aaggtcagtt tgctttatct       240
     aatataacaa gtgatactac aaaattttat tacgttgccg ctcagttaga taatcaattt       300
     gctgtcgagg tgaaggatat tatcatttct cctcccgaga cggataaata catcactctt       360
     aaaacgcaac tgattaaaag attgtctgcg tctcaagaaa agaaagtgat gcagttgctg       420
     aggcacgagc agctaggtga tcgcaagcca tcacagtttc tgcgatacat gcaagatctt       480
     gcgggttcat ctgtccccaa ggatattttt taaaaacatt atggtcgagt aggttaccac       540
     aaacattcaa acggttatag cttcacagcc tgatctgcct atacgaaaaa ttagctgacc       600
     tggcagacaa ggtgcatgag atagcaccct catcaccaca ggtcgcaagc acatctgtga       660
     tggccacacc ccctgcatcc tccatgttgg aagaaatggc caagcagatc caactcctga       720
     ccaagcaggt atcggaactc tcgacccagg tacgtcacaa ctcggtctca tcgaaattta       780
     aagagcgttc ccggagccat tccagacatc gcaggaagtc aactacccag caaaaatgtt       840
     ggtaccattt taaatttggt tcaaatgcta aaaaatgtgt gcagccatgt aattacggag       900
     agtcggaaaa ctctctgggc agccggaagt agcggccaac gtctgccctt tacctacagg       960
     ccgtcttttc attaccgacc gtatttcaaa aatgcttttc ctcattgata ctggctcgga      1020
     tctctgcgtt tttccacggt tggctaccaa ggcgccctgt accaagacaa agtatgaact      1080
     tatggcggcg aacggtacag tcattcatac ttacggtcct acattgttgc acttagacct      1140
     aggactgaag cgtactttca cctggaaatt taccatcgct gatgtttcaa agcccattat      1200
     cggcgtagat tttttgatat tttacaatct tctgtagatt gcagatgtca gcgactcgtc      1260
     gatggaaata ccactctgtc agtgcaagca ataaaagaaa atatctccga tgaccttgcg      1320
     tcagtcaaag ccatttcggg agaatcaaaa taccatcagc tgcttcatga gtttccagag      1380
     gtaacgagac catcaggtac gtcttcctta cctaagcata ataccgtgca ttacatcaaa      1440
     accattcccg gaccaccggt taccagtaga cctcgtcgtt tagacccagt tagactgaaa      1500
     gcagccaaaa aagaatttga cgatatgctg tcacagggaa ctgcccgctc ctctaacagt      1560
     tcgtggtcgt ccgctctgca cttagttaag aagaaggatg acggatggag accatgtggt      1620
     gattacagag cactcaatgc tcgcacagta cctgacaggt atccgatacg ccatatccaa      1680
     gatttttcct accaactctc tggttgtaca gtattttcaa ctatcgatct agtcaaggcg      1740
     tacaatcaaa taccagtaca cgtcaatgat atccacaaaa cagccattac aactcctttt      1800
     ggactttttg agttcccgta catgaccttc ggactgcgca atgcagcaca aacctttcaa      1860
     aggttcatgg acgaagtgct acgtgatttt gatgactttt gttttggtta cttagacgac      1920
     attttggtat tttccagttc tgaagaacaa catcagcgcc acatcagact actcttcacc      1980
     aggctcaaag agtatggtgt tttgataaac acatccaagt gtgtcttcgg gcagcgacag      2040
     gtaaaatttc ttggttacct agtgtcagat tctgggactc aacctttaga gacgaacgta      2100
     aagagcatag aggagtgcaa tgtgccgaaa actgctaagg aattacgacg tttcctcggt      2160
     atgttcaatt tttatcggcg ttttattccc ggcgccgcaa atatccaagc accattagat      2220
     gctgcgcttc taggacctaa gatgaaagga gctaagccga tcactatgac accggagatg      2280
     atggaagcct ttcaaaaatg taagacttgt ttatctcaag ccgcattact ggctcaccca      2340
     gatccttctg cagagctagc ttttgccact gatgcttctg atgtcggaat tggagcagtt      2400
     cttcaacaac gtgttaataa cgtatggcaa cctcttggtt tcttttctaa aaaattaaca      2460
     tctgcgcaga agaagtatag tccttacgac agagagctgt tagccattta tgaagccatt      2520
     aaatattttc gacacatggt tgaggctcga aacttcgtga ttcacacgga tcataaacct      2580
     ctcacatatg cattcaacat taacagggag aaatgctcac cgcgccaata tcggtacttt      2640
     gattatattt ctcagttcac aactattatt caatacttac caggacgttt gaacgtagtg      2700
     gctgatactc tgtcacgact ggaagaggtg agtcgatcta ttgattacca ggctctagca      2760
     cttgctcaag atactgatcc tgaactgcta ggtctgcttc aaaaaggctc atcgttaaaa      2820
     ctggttaagg tagatttgcc acactgtaac cagaagttat actgtgacgt atcaatgtct      2880
     tctccgcgcc cgttcattac tgagaagttt cgccgacaag tttttgaaac tttacacagc      2940
     ttgagccatc ctggtaggac agctacagtg cggctggtta cacagagatt tgtatggcca      3000
     gggattcgca aggactgtag agagtggaca cgagagtgta tactttgtca aaagagcaaa      3060
     gttcaccgtc atacccttgc tcccttatcc tcaattccaa ctcctacatc gaggtttgaa      3120
     cacatccacc tcgacatcgt cggaccttta actgtttcgt ctgatttcag atattgcctt      3180
     actgtcatcg accgtttcac acgatggcct gaggcattcc cacttaagga catcacagct      3240
     gattcctgtg ctgccgctct tctctctggt tggatagcaa gatttggctg ccctcttcga      3300
     attacaaccg acaggggtcg tcaattcgag tcgcatctct tcaaggcact atcagccatg      3360
     gttggtgcac atcactttac gactacttcg tatcatccag cttccaacgg cttgatcgag      3420
     agactccatc ggcagctgaa ggcagctatc atgtgccatc cctcttcgac ctggacggag      3480
     cacttccctt agtgctgctg ggcatccgta gcgcttggaa ggatgacatt caggcttcag      3540
     cggctgagct ggtctacggg gagccccttc gacttccagg gcaatttatg gcaccctcag      3600
     aagactacag gactgcagat atcacaaatc tggtcactcg tcttcgtgct ggtatggcac      3660
     gactctcacc gaagcccacg tcatggcata ggacaggtcc tttttatatg ccagctgacc      3720
     ttgcagagac aacacattgt tttttacggc aggaccacgt ccgcaaacca ctggaaccac      3780
     cttatgcagg cccatacaag gttctcaaga ggactcctaa gtatttcaaa atagacatat      3840
     gtggtaagcc taataacgtt agtgtggaca ggatcaagcc cgcatatgtt acgcgagagg      3900
     ccgttcctgc atcaaagagg ataatagcag caccaaaggc tatctctcaa cctgacgtgg      3960
     agcagacact tgagaagcgg acaagaagcg gaagaagagt caagtttcca gactactatc      4020
     gcccttaacc aggtctctgg gggggagtac                                       4050
//
ID   Gypsy-10_HMM-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   CAEZ01009965;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_HMM_;
KW   Gypsy-10_HMM-I; Gypsy-10_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-425
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009965; Positions    5488    5912.
XX
SQ   Sequence 425 BP; 115 A; 79 C; 62 G; 169 T; 0 other;
     tgtagggaac attacttatt ctaaattaat attattacat ttactaaaat catccgcacg        60
     cagcgcattg gaacaattca aaccttttcc gagttttttt gctatgcgtg tcgtaggctg       120
     ctagctagca tcgccacgtt taaagagtcg gctagaatcg cttgcgacat tcacttgtgt       180
     atccattgct ctcttagctt gcattcaatt ctcaaccgta acttcttgct attacgtgct       240
     agtttagctt gtattttcta tcggtattta tttaaatttc tttatttcct tctgtgatta       300
     ttttctcttc acgtatctgt gagttaaata aatttggaca atttctccac aaaatttgga       360
     tttttaattt tactcattta gtgtaaaata aataagatca tattaaatag tggtatcaca       420
     tctca                                                                   425
//
ID   Gypsy-10_LH-I repbase;    DNA;    INV; 4213 BP.
XX
AC   ADOQ01008857;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_LH_;
KW   Gypsy-10_LH-LTR; Gypsy-10_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4213
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008857; Positions   16726   12514.
XX
CC   'CAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..2097
FT                 /product="Gypsy-10_LH-I_1p"
FT                 /translation="MSGKREKLGFQFWLNDNRNHSEALDSSANGEEKRVIV
FT                 ESQPNQSRLIRNQDQRALSISEQRSKTTGKKTGNKKQSTGDANTDTISKKP
FT                 TVERNRTLLGLDSALKATREDKKPRQSRHLPSRTPSHVSEYSEFALTSYDS
FT                 CVFDPDEFRTEVKMNNDQELPKTTESEIDRDIELLRKEMTQNAGAKTEDAT
FT                 RNSELTDTMMDFVREIRQQLTEMQEQFHEQIENVRGQQQEWQQRLLAIPGQ
FT                 RELNVPLTTRRVTDNADVAYGRGMSDIRNRPIAMHGYMQLKEARSLIPEID
FT                 GTSQAKIQEFLSASTYAVESIDPLEELQLLKAILCTKLKGKVLLDFQTRDI
FT                 QTFVQLKREIEAGYTTHKSITHLQIEFNTLKQKHGENAQAFGTRADQLAMK
FT                 LYEAMIDGKSLTVMEKNTIKTTIQNLALQNYQIGLNESIKTIVRARNYKTL
FT                 QEAIAIATAEEKLQSPYSENRNYNKFSNSNGAREKILKCIKCGKLGHEGRD
FT                 CRIGRFHNYNNRYQLPRASGQKVNMMNMFCKHCKRSGHNQDTCWSLHGRPD
FT                 KDDARTRKNAKQGEGEEANIKQHDPQKHCR"
FT   CDS           2260..3237
FT                 /product="Gypsy-10_LH-I_2p"
FT                 /translation="MKKIMIIGATGQKAETLGTIMAHVLLKGQVITHKMHV
FT                 VKDNFPISHEGILGVDFLKKHVMKWDYPTKRLTIGDTKFKLFPCRPVTLKS
FT                 RSETIISATTNKNMTGIVHALEMQPGIIIGGCVTTAQDYGCVISVINTTDK
FT                 PVDIQTPHVELTLLEAETGIQVFNTEVNKATDKPMSRLEKIRDALRIEHLN
FT                 KEEQKAIAKICEEYSDIFHIEGEPLTHTVAMKHEIATRPGTAPANTRPYRL
FT                 PEKHKKKVKAKRYYDKRANQVIFQEGDKVLLYDETLRRGRSKKLETLWCGP
FT                 YVIVKRNSEVNYTIKKGRKEMTVHANRLKLLVNV"
XX
SQ   Sequence 4213 BP; 1562 A; 782 C; 984 G; 885 T; 0 other;
     taaatttggt ggcagcggtg ggatccgcaa ttaccgaagt tcattctgga cacccgatga        60
     tcggatatcg gcagtggtaa cagagggacc actgagagaa tctatcacct ggagctacaa       120
     aagtgaggtg agaaggcagt gtggaaaatc gcctggattc acaaggcgac gacagtccgg       180
     gcaacaaagc ggcggaaagg tgcctggcgg agcaacgacc aagctgagtc agcgtaaccc       240
     gagaggacga cgacaggcaa ggatcgcgac ctacctcaac aacggatcag ctaaccagca       300
     gcgtgcatta tgcgagcgag cggcctaatg taagtcaata ataagaaata atattaggaa       360
     aagcgaatgt ccgggaaacg agagaaatta ggcttccaat tttggttgaa cgacaaccga       420
     aatcatagtg aggcgttaga tagctccgcg aacggagagg aaaagcgcgt aatcgtagaa       480
     tcccaaccaa accaatctcg gttgatccgc aaccaagatc aacgagcgtt gagcataagc       540
     gaacaacgta gtaagacgac aggaaagaaa actggaaata agaagcaaag taccggagac       600
     gcgaacacag ataccatttc gaaaaaacca accgttgagc gcaatcgtac attgctaggg       660
     ctcgacagtg ctttgaaagc tactcgcgag gacaaaaaac cgcgacaaag taggcatctg       720
     ccaagtagaa ctccgagtca cgtatcggaa tacagtgagt tcgcactcac atcttatgat       780
     agttgcgttt tcgacccaga cgagttccgc actgaagtaa aaatgaataa tgatcaagaa       840
     ttaccgaaga ctaccgagtc agaaatcgac cgggatattg agttactaag aaaggaaatg       900
     acgcaaaacg caggggcaaa aactgaagac gcgacgcgaa actcagagct aacagataca       960
     atgatggact ttgtgcgcga aataagacaa cagttgaccg aaatgcaaga gcaattccac      1020
     gaacaaatag aaaacgtacg ggggcaacag caagagtggc agcaacggct cttagctata      1080
     ccgggccaac gagaattgaa tgtaccactg actactaggc gcgtaactga taacgcggat      1140
     gtagcatacg gacggggtat gtcggatata cgaaataggc cgatagccat gcatgggtat      1200
     atgcaactaa aagaagcgcg aagcttaatc ccagagattg acggaacgtc acaggctaaa      1260
     atacaagagt tcctcagcgc gagtacttac gcggtggaaa gtatagaccc tttggaagaa      1320
     ttacagttgc tgaaggcgat actgtgtact aagttaaagg gaaaggtctt gctcgatttt      1380
     caaacaagag atattcaaac gttcgtgcaa ttaaaacgag aaatagaagc aggatataca      1440
     actcataaga gtataacgca cttgcaaatt gaatttaaca cgctaaagca gaagcatgga      1500
     gagaacgccc aagcttttgg tacacgagca gatcagctcg cgatgaaact ttacgaagcg      1560
     atgatcgatg gaaaaagtct cacggtcatg gagaaaaata caataaagac cactatacaa      1620
     aacttagcgt tacaaaacta ccaaatcgga ctaaacgaaa gcattaaaac tatagtacgc      1680
     gcacgcaatt acaaaacgct acaagaggcg attgcgatag cgacggctga agaaaaattg      1740
     caaagtccgt attccgaaaa taggaattat aacaagttca gtaatagtaa cggcgcaaga      1800
     gaaaagatac taaaatgtat caaatgcggc aaattgggtc atgaagggcg tgattgcaga      1860
     ataggacgct ttcataatta taataaccgg tatcaattac cgagagctag cggccagaag      1920
     gtcaacatga tgaacatgtt ttgtaaacat tgcaaaagat cggggcacaa tcaagatacc      1980
     tgttggtcat tgcatggaag gccagacaag gacgacgccc gaacgaggaa aaacgccaag      2040
     caaggcgaag gagaagaggc aaacataaaa cagcacgacc cgcaaaaaca ttgcagatag      2100
     catcagtagg cgaatatgca caggccgaac ttaatctaga tttaatagca gtacctatgc      2160
     aagaaattcg agcagcacgg gcagttatgc tcgtagatac aggagctgca ataactttaa      2220
     ttaaattgaa aaccttaaaa gaagaaactt tagtttacga tgaaaaagat aatgataata      2280
     ggcgctactg gacagaaggc cgaaacgttg ggcacgataa tggctcacgt actattgaaa      2340
     gggcaagtta ttacgcataa aatgcatgtg gtgaaggaca attttccgat aagtcatgaa      2400
     ggaatattag gagttgattt ccttaaaaag cacgtgatga aatgggatta ccccactaag      2460
     cgactaacga taggggacac caaatttaaa ctatttccgt gccgaccagt cacattgaag      2520
     tcacgaagtg agaccataat atccgccact acaaataaaa atatgacagg aatagtgcat      2580
     gcattggaaa tgcagccggg aattatcata ggaggttgcg tgacgacagc tcaagattac      2640
     ggttgtgtca taagcgtaat caacactacc gataagccgg tagacataca gactccacac      2700
     gtagagttaa cattgttaga agcggaaaca ggaattcaag tatttaatac tgaagttaac      2760
     aaggcaacag ataagccaat gtctcgtttg gagaaaataa gagacgcatt aagaattgaa      2820
     catttgaata aggaagagca aaaggcaata gcaaagattt gtgaagagta cagcgatatc      2880
     tttcatatag aaggagaacc gctgactcat accgtggcga tgaaacacga gatcgcgacg      2940
     cggccgggga cggcgcccgc caacacgcga ccgtaccggt tgccggaaaa gcataaaaaa      3000
     aaggtaaaag ctaaacggta ttacgataaa cgggctaatc aagtcatctt ccaggaaggt      3060
     gataaagtgt tattatatga tgaaacgtta cgacgaggac gttcaaagaa attagaaacg      3120
     ttatggtgcg ggccatacgt aatagtaaaa aggaattcgg aagtaaacta cactattaaa      3180
     aaggggagga aagagatgac ggtgcatgcg aaccgtttaa aattattggt caacgtttga      3240
     aaaattacaa gtgtaaactc gtatgttaag aatgagacta tatttgtaac gttgaaattg      3300
     ccacttgtaa catatccgaa atacaggtta ataaaagcca tacctttacc tgtccctgac      3360
     caacgcggga tatttgtatt taccgagatt aaccaacaat tgtttgctgt aaatttagaa      3420
     ttatccgtat atctagcgat aagcgaagaa aacttagaaa aatgtattga gatagacaag      3480
     aaatatatat gtaaatcgga tagtccgata tataatatta accctcgagc gttatgtgaa      3540
     gtacaattgt atgtaggttt gacaaaaagg gcaatttgcg gaaataagta tgtaagtttt      3600
     aaccaaacta tttggatagc attaacgaag gaaaattctt ggttatattc gactaacagc      3660
     gaacaagacg taatgattac ttgtttaaac cataaggaaa tacagaccaa aatcacacga      3720
     acaggtagaa taactctatt aaataattgt aaaataattg cgaaggacat gaccctgaac      3780
     acaggaacaa taatagaagg cccgaacatt caggcatata taccacgttt taatctaacg      3840
     ggaaaaatag aaggtataac taatggtgaa acgagcatgg aaatcgaacc gttaaaattg      3900
     aaaaagatga tacaaaattc aaaggaatta atagatttgg gagaaaaaat aagagaagta      3960
     gacgacgagt taacagaggg aaaaattatt caacccttga ctttgtatcc tgtggtcaca      4020
     agttcgcttg ccatcgtgat tattgtatta gcactaggca taggagcaat actattatta      4080
     cgaaaaagaa agactactgc ggaataatag gtagacggat aggacaagaa ttaactgtaa      4140
     aactatacac tcgcactgcc tactccgcac ggaaactccg tacctacgtt tccttccatt      4200
     cgcgagggag gga                                                         4213
//
ID   Gypsy-10_LH-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   ADOQ01008857;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_LH_;
KW   Gypsy-10_LH-I; Gypsy-10_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-451
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008857; Positions   12513   12063.
XX
SQ   Sequence 451 BP; 150 A; 99 C; 92 G; 110 T; 0 other;
     tgttgtgtgt cgtaacacaa cgtgtcgcta taaggttaat taagttaaat accaaaataa        60
     aaatactaag aaagaattat ttagcaaata aagaataacg atgaggctgc agagaaacaa       120
     cctcggattc aaggtgacac gaatcagcaa tccgagaaat atcaacaata acatatcaat       180
     aatattacaa aactcttgat tgccgattcg tataaataca gtcgcgcgca agcagcgacg       240
     gattcagttt acgatacgcg aatacaccga ctcgtttccc cgtgtccgta cacggctcac       300
     gagaatctaa caccgtcctg gcggtttgtg agtgattaaa taaattgttc gaggcaaggt       360
     ttgcgtccag ttattccaca cctctaagca gtgcgtcctg ttccccaagc ggatctcgaa       420
     cttacggttg cgatcggaaa gactcgcaac a                                      451
//
ID   Gypsy-10_LMi-I repbase;    DNA;    INV; 6316 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6316
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3377-3377 (2014).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1532..3091,3272..5815)
FT                 /product="Gypsy-10_LMi-I_1p"
FT                 /translation="MDLHHPLASHWNSRLITRTVSSTVALVQLPRSAVLCS
FT                 YPNATFGGCRRRPPLGRQRAPTDAAFCSIFPQGSRLYLRDCVSSTGFLIDT
FT                 GADVSLLPTTMATGPLRPHHPLLRAVNATQLRCAGSTSHSVHLSPDCILEW
FT                 NFLVADIPEPIVGIDFLTHHKLSPDVVRRSVFHHPSNKHFSCDSSSSGSAS
FT                 ASATVVSEYTKLSDDFDTLLNKWFDERKQVLDLKSERESIVRRLAHAESQL
FT                 SAAKQRLSALRADCKVSTSVSSAINVPAPMRRHDCASDNPPNLAPRSYADV
FT                 CKQNAVARPTATAVKTVRALCPLAPAPHAIHNSQPTDLITETLTSPVSKQP
FT                 VSRQPMGKHKSKFISAGNNCASVRAKDSNASVCPQSRSVSNVHAPAATPAV
FT                 AQPSVSVTVAHPRASVATAVTSVSADLPAASARLPSCAVPRVAPPPATVVA
FT                 TSTTPPADPHAAAARRPSCTLALVAPPAAPAISQPAGTVSCRLPSPHRLSQ
FT                 HRPPNPMHRTPHPPLPPTLGSAFLKKSDGSWRMCGDYRRLNAKTIMDRYPI
FT                 PNVADFTHALAGAKIFSVVDCKRAYHQIPMAPEDVEKTAITTPIGLYHYRF
FT                 MPFGLKNATQTWQRFITEILLPLKFCFVYLDDILLFSTSVEDSKRHLQILC
FT                 DTLAKAGIELNHSKDQLHLPSVKFLGYTVSADGISPPSKKVNAIKELPRPS
FT                 TFKELRRFLGTINYYRRHLPGAADIQAPLTDALAGKNTSGTRPVSWTPAMS
FT                 EAFSSLKDLLSNAITIAHPHPEADIFITTDASDTAIGAILSQSLDGNISPL
FT                 QFFSKKLNHAQRKYSAFDRELLAIYEAIKHFRSEIEGRPFHVLTDHKPLAA
FT                 AIQNPPADPPPRRFRYLDFISQFTTDVRYIKGADNIVADFLSRVDAVSSLI
FT                 DLSNLAILQSADDELMQLVSDHSSSLHPVRTSFPGVTGEIWCDDSTGKLRP
FT                 FIPRPLQREVFQKLHELSHPGIRASTRLVTERFVWRDVKRDCQAWARACIP
FT                 CQRNKITSHTSPPLGSFPIPAGRFQHVHIDLIGPLPLADGFRYVLSTIDRT
FT                 TRWAEATPLTNITAETVAKAFLHSWVSRFGCPLVITTDQGRQFESALFSDL
FT                 CHLCGIKCIHTTAYHPQSNGLVERWHRTLKTSLRCHDTLWTEALPLVLLGL
FT                 RATYKEDLRGTVAEFVYGQSLLLPGELVSPSPIPHSSDLPTLVDRVRQHCA
FT                 RICPPPPSSHTPPQVIVPKSLESCEFVMLRDDTVRPPLSPPYSGPHRVLRR
FT                 SPNTFTLLINNSPSTVSVNRIKPAHVEPSSSPPVEGNPPPLITFEADSSLP
FT                 ASSASPSSPANAPLPSPPPARVASPTPPSPSSLLSVRGLSTLSRLPLPRLR
FT                 HSTSS"
XX
SQ   Sequence 6316 BP; 1240 A; 2113 C; 1363 G; 1600 T; 0 other;
     ttggtgaccc cgtactgagt ttcttgtgct gcggtgcatg tttcagtgca ttttgctcgc        60
     ccgcgctggg ttaattcacg aaatatggca gtatgtgatc cgaggttacg accacaatga       120
     acacgccggt ccgacttcca ccggcttcac cgtggtttct caaccatcgt tcaactcacc       180
     gctgccccgc gattcgtcga gtgtatttgt tttgacgcct cagcacacgg ctcagcaatt       240
     ttctccggac ttgttcaatt cggcccgaac aaaatgcaca gtgtcacaca atggactccg       300
     gctttgtgac cccgaacttg cattccggtg ctcaaatgac gaacaatact catgtctcgc       360
     aggaccattt tgtgtgccac attctcaacc agtgccaact gcagatagtt cagtgtactg       420
     tgcttcaaat ttgtatttgc gcccgccatg gctccgccat gtgcaccagt gtatccatct       480
     ggacctacgt gcctggacat agtttgaaca gtggcgcgct gtcgcagaac tatatttcgc       540
     tgcctgtgtc taatgaactg gctagcggat cattcctgac tcttctttga gtttgcgttt       600
     aattcaggac ctttgttcaa gctccttccg cacttttttc cgtgcgtgca gcttcggttg       660
     cggacagtgc agtgcattcg tctttcggac aaccacctgt gcagtgttta cccagtgact       720
     gtttttaacc ctcatactct tagtatttct cagtggaact tgtcaggaca ggacaatgtg       780
     ttcgatgtgc agccacattc agcgccgaca cctgcccgcc cgctttggcc tactcgtccg       840
     ctcatgtgct ggcacatcgt gtgactctct tacgctgtct cgctcaaccg cccatttcat       900
     cggcacaatt cagtgcctct gcctgtcttc tgtgtcgtgc ctcctcaaca actgcaacat       960
     cagcctgacg ctgcagtgcc agatcgggac ctcaggcacc atcttctcct cctccccacc      1020
     ggacgtctgc ccaagctgcc tccggctctg actactggtt cgccttagta gaacaaatct      1080
     tcaaccacca ttcttgatct tctatctctg tctcatcaca catgcaagca catcatctgg      1140
     taagtcctga tgtcgctact tgtgggagca gaccatcctg gagtcagccc ctgacaaatc      1200
     cctacattct gcaggaggaa catctggtga aggaagcctt cccagttgtg gagacgtctt      1260
     cctgctggtc agtgagaggc atgccagaca tctgatggca gtctggacca caagctgctt      1320
     tacgtccaga cgtctggcct aaatcctcgc tgagggttca cgctgcctac ttacgtgaag      1380
     cccatctgac gctctgctcc gccaaactgc actcctcgca ccttcgctcg gggccgctcc      1440
     cgcatgctgg ccgacctcgt tgacccgcct ggcattccgc gtcgcctcac aactgagaca      1500
     ccgcagccgg cctccgccgc agaatccgaa gatggacctc caccacccac tcgcttccca      1560
     ctggaacagc cgcctcatta cccgtactgt ttcttccaca gtcgctttgg tgcagctgcc      1620
     aagaagtgcc gtcctgtgct cgtacccaaa cgcaactttc gggggatgta ggcgccgccc      1680
     cccactcgga agacaacggg cacctaccga cgctgcattc tgttccatat tccctcaggg      1740
     cagtcgcctc tacttgcgcg actgtgtttc cagcaccgga ttcctcatcg ataccggcgc      1800
     ggatgtttcc ctgctaccca ctactatggc aactggccct ctccgcccgc atcacccgtt      1860
     gctgcgagct gtcaatgcca cacaacttcg gtgcgcgggt tcaacctctc actctgtgca      1920
     tctctcacct gattgcattc tcgagtggaa ctttttagtg gcagacattc cggaacctat      1980
     tgtgggtata gattttttaa cacatcacaa actttcaccc gatgttgtgc gccgctctgt      2040
     tttccaccat ccctcaaaca aacatttttc gtgtgattcg tcgagctccg gctctgcttc      2100
     cgcgagtgct actgttgtta gtgaatatac caaattgtct gatgacttcg acacgctgct      2160
     gaataagtgg tttgacgaac gtaaacaagt gcttgacctc aagagtgaac gggaaagcat      2220
     cgtacgccgt cttgcccatg ctgaatcgca gctgtctgcg gccaaacaac gtctttctgc      2280
     tctgcgggcg gattgcaagg ttagtaccag tgtttcctct gctattaatg ttcccgcgcc      2340
     catgcgtagg catgattgtg cttcagacaa cccgcctaac cttgctcctc gctcctatgc      2400
     tgatgtgtgc aaacaaaacg cggttgccag gccaaccgcc acagctgtca aaactgtacg      2460
     tgcactctgc cctctggcgc ctgctccgca tgctattcac aactctcagc ctactgacct      2520
     aataactgaa actttaactt cccctgtctc taaacaacct gtcagtcgcc agcccatggg      2580
     caaacataaa tccaagttta tctccgctgg caacaattgt gcttctgttc gagctaaaga      2640
     ctcaaacgct agtgtatgcc cacagtcgcg cagtgtttca aatgttcatg cacctgctgc      2700
     cacgcctgcc gtggctcagc cttctgtttc tgtgacggtg gcgcacccgc gtgcttcggt      2760
     ggccaccgcc gtaacatccg tctcagctga cctcccggct gcttcggctc ggctgccatc      2820
     ttgtgctgtg ccacgggtgg cgccgccacc tgccacggtg gtcgccacat caactactcc      2880
     gcctgccgac ccgcacgccg cagcagcccg gcggccatct tgcactctcg cacttgtggc      2940
     gcctccagcg gcaccagcga tatcacagcc ggccgggaca gtcagctgtc gcctcccatc      3000
     cccgcaccgg ctgtcacaac atcgtccgcc gaatccgatg caccggacgc cacacccccc      3060
     actgcctccc accctcggca gtgcatttct gtagtaacta acggcacggt ccacagactc      3120
     agactcaccg acgacatgcc tgtgtgtagt aaaccacgcc gcctttgtgc tgaaaaattc      3180
     gtggccgtgg aagcacagat cacagaatta ctagaggcag gcataatcga accttcttct      3240
     agcagttggt cctcccccat tcacttagta aaaaaaaagc gatggttctt ggagaatgtg      3300
     tggggactac cgtaggctca atgctaagac gatcatggac aggtatccta ttcctaatgt      3360
     agccgatttc actcatgctc tcgctggtgc taaaattttt tctgtggttg actgcaaacg      3420
     tgcataccat cagataccca tggctccgga ggatgttgag aagactgcca tcacgactcc      3480
     gataggttta taccactacc gcttcatgcc atttggactt aaaaatgcca cacaaacctg      3540
     gcaacgcttc atcactgaga ttctccttcc cctaaagttt tgttttgttt acttagatga      3600
     cattttacta ttcagcacct ctgttgagga tagcaaacgt catttacaaa ttctctgtga      3660
     cactttggcc aaggcaggga ttgagttgaa tcacagcaag gaccaactgc acctaccttc      3720
     agttaagttt ctggggtaca ctgtttcggc tgatggcatt tcccccccct ccaaaaaggt      3780
     caatgccatc aaggaattac cacgcccctc cacattcaaa gaattgaggc ggttcttagg      3840
     cactattaat tattatcgtc ggcacttgcc tggtgctgct gacattcaag ccccccttac      3900
     tgatgcgctg gcaggcaaga atacctcagg cactcgcccc gtctcttgga cccctgcaat      3960
     gtctgaggct ttctcttccc ttaaagacct tttatcgaat gctattacta tcgctcaccc      4020
     tcacccggag gcggacatct ttatcacgac cgatgccagc gacactgcca ttggtgccat      4080
     tcttagccaa tctctagatg gcaatatctc tcctctccag ttcttctcaa aaaaattaaa      4140
     tcatgctcag aggaagtatt cggccttcga ccgagaactc cttgccattt acgaggccat      4200
     taagcacttc cgctccgaga tcgagggccg tcctttccat gtcctcactg accacaaacc      4260
     tttggccgcc gcaatacaaa atccaccggc cgatcctcct cctagacgct tccgatacct      4320
     agatttcatc tcccagttca ccactgatgt caggtacatc aagggtgctg acaacatcgt      4380
     agccgacttc ctctcccgag tcgatgctgt gtcttccctg atcgacctct ctaaccttgc      4440
     cattctccaa tcagctgatg acgagctcat gcaactagtt tctgatcatt cctcctctct      4500
     ccaccccgtc cgcacctctt ttcctggggt gacgggcgaa atttggtgtg acgattccac      4560
     gggcaagctt cgccccttca tccctcgccc cttacagcgc gaggttttcc aaaaattgca      4620
     tgagctttcg caccctggca tccgcgcctc aaccagactt gtcactgaac gtttcgtctg      4680
     gcgagatgtc aagcgagact gtcaagcttg ggctcgggcc tgcattccct gccaacgcaa      4740
     caaaatcacc tcccacacct cccctccttt gggctctttc cccattcccg cgggcagatt      4800
     tcaacatgtc cacatcgacc tcatcggccc tcttcctctg gctgacggtt tccgctatgt      4860
     cttgtcgact atcgatcgga cgacccgctg ggctgaggcc acccctctca ccaacatcac      4920
     ggcagagaca gtggctaaag ccttccttca ttcttgggtt tctcggttcg gctgtccctt      4980
     ggtcatcacc acagaccaag gccgccagtt cgaatccgct ctcttttccg acctttgcca      5040
     cctctgcggc atcaaatgca tccacaccac cgcctaccac ccccaaagca acgggctggt      5100
     agagcggtgg cacagaaccc ttaaaacttc tctccggtgc cacgacactc tatggacgga      5160
     ggcacttccc ctcgttttgc tcgggttacg agcgacctac aaagaggacc tccgtggcac      5220
     tgtagccgaa tttgtctacg gacaatcctt acttttacct ggcgaactcg tctccccctc      5280
     tcccattcct cactcctctg acctccccac cctggtagac cgggtgcgtc agcattgcgc      5340
     gaggatctgc cctccacctc cctccagtca cactcctccg caggtcattg ttcccaagag      5400
     cctggaatct tgcgagttcg tcatgctacg ggacgacacg gtccgtcctc cgctcagccc      5460
     tccttactcg ggccctcatc gggtgctcag gcgctccccc aacaccttca ccttgcttat      5520
     caataactct ccctccactg tgtcggtaaa ccgcattaaa cctgctcatg tcgagccctc      5580
     ctcctcacct ccagtcgagg gcaatcctcc tcccctcata acgttcgagg cagattcctc      5640
     tcttccggcc tcttcggctt ctccgtcgtc tcctgccaat gcgcctctgc cttccccccc      5700
     tcctgctcga gttgcctctc cgactcctcc ttccccctcc tccctcctct ccgttcgagg      5760
     tctctccaca ctctcccgcc tcccccttcc gaggcttcgg cattcaacct cttcctgagg      5820
     ccccggtcct ggaattcgag gtttctatcc ctccccaact ctcttctgac attgcaattc      5880
     ttttgcacga aggctcgatt ttcatactat gtacggccgt cagcgcttcc cccccccctc      5940
     cccagcaatg taggtacgag ttactgaaat gtttctcccc tcctgcttca tttaatctgg      6000
     acgccacacg agcttttctg ctcccctcgg gtgtggttag agtggtactt cccctcctgc      6060
     ctgcacaacc ctcagcctca cgccagctgg tgcgtcgggt tcggcagccc cctcacctca      6120
     gggacttcga ggttttcggc cccactgctc gccgcctcca tggaccgtcg cctctgccag      6180
     acaactccgt ggagctgtcc atcacccgga ctccacgcac acaaccatcg ccggctgtcg      6240
     ccccccgccc cgccctccgc cctcacctca acaagagtac tccgtactgc gggggggggg      6300
     gggggggggg gggctg                                                      6316
//
ID   Gypsy-10_LMi-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-197
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3378-3378 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 197 BP; 52 A; 48 C; 44 G; 53 T; 0 other;
     tgtggcggcg atagccgtaa tcgaccagaa caaacaatca tatctttacg attgtctttg        60
     ggcgagccgc ctctcggccg ccaccaacaa ttactttcag ttagtctgtg ttatgcttgt       120
     gaacagttca gttcaataaa gtgttgatac gcagaaaagt gtgttttctg gggctcacac       180
     cccgtgaaaa acccaca                                                      197
//
ID   Gypsy-10_MeUr-I repbase;    DNA;    INV; 4124 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4124
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3045-3045 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..956
FT                 /product="Gypsy-10_MeUr-I_1p"
FT                 /translation="MSEDSDSTVRSVKADEDGGVTTRRPVKKMRVSIDRPS
FT                 DDSSNDDTRQPAKPPAVTSLKVPQFSPDDPEIWFALLEGQFENYGVINDHA
FT                 KFTQVVVNLDMQHAKAVKDIILDPPPKGRYSKIKTELIRRLSASHEKKVKQ
FT                 LLTHEELGDRKPSQFLRHLRDLAGPNVPEDFIRTIWCNRLPTNIQTVLASQ
FT                 PTHSLEQLGDLADRIQEVTAPYQISAVASSTSSPASEIAELRKMVEHLAIK
FT                 LDEHTRKSRTSNRTRPQLRQRRGSSSQPRSRSPSNYRRYPLCWYHWKYGSK
FT                 ANNCMKPCDYQAGNGAGTQ"
FT   CDS           908..4099
FT                 /product="Gypsy-10_MeUr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LHETVRLPSGKRRGHSVMATTDCPTSPGRLFVTDQNM
FT                 KTQFLVDTGSDICVYPRSRLRERRAPTTYQLSAANGSTIDTYGFVHLDLNL
FT                 GLRRSYKWRFVVADVIKPIIGVDFLCHYDLIVDCKNQKLVDNTTTLFTPAS
FT                 PAYSTDNISSVKVLTGDSRYHILLSTEFPEITRPAGTQKTSPHNTQHHIRT
FT                 TPGPPVSCTPRRLAPDKLLIAKKEFEAMLANGTARPSESPWSSPLHLAPKK
FT                 DNGWRPCGDYRQLNARTIPDKYPIKHIHDFAHNLSGCKIFSTIDLVKAYNQ
FT                 IPVAEEDIPKTAITTPFGMYEFPYMTFGLRNAAQTFQRFVDEMMRGLDFIY
FT                 CYLDDFVIFSEDEEQHIDHLRQIFIRLRNYGMVLNVSKCVFGASSVTFLGY
FT                 RISESGTIPLDEKVQAIRDFPPPKDVRTLRRFLGMANFYRRFLPKAAQIQA
FT                 PLNALLIGAVKGSTPISLSDEALKAFSDVKESLSKAALLAHPDCSAKLALV
FT                 TDASDVAIGAVLQQFKDEAWEPLAFFSRRLNSTQQHYSPYDRELLAIYEAI
FT                 KYFRHMLEARHFTVYTDHKPISYAFHERKSNCSPRQFRHLDYISQFTTDIR
FT                 HISGKSNVVADALSRVEELSKPVCLASLAQAQRTDEELAEYLAHTNSSLRI
FT                 REIQYPGSQNTLYCDVSTLTPRPFVPKCLRKQVFQSLHSLSHPGIKATVQL
FT                 VAKRFVWPRMRKDCRVWAQACLACQRVKVTRHVSTPWGNFDVPSARFMFIH
FT                 IDIIGPLPISHGNRYCLTAIDRFTRWPEVIPIPDITAETVAKALLSGWISR
FT                 FGCPTDVVTDRGRQFESTLFKYLSKISGFRHKRTTAYHPSCNGLVERFHRQ
FT                 LKASITCHADESWTEVLPLVLLGIRSSFKEDLQSSSAELVYGEPLRLPGEF
FT                 FDISTTCTSDISDFSARLRSFAEKLKPVPASHHSKQKTFIFKELASTNYVF
FT                 LREDALRASLQPAYTGPYKVLEKSDKVYKILVKGKPQTVTIDRLKPAYTVA
FT                 DEENMSGNTTVSTPPTLQPHTAISNTTTTTTATTYPRIAQGKVTRSGRRVH
FT                 FPDYYRP"
XX
SQ   Sequence 4124 BP; 1178 A; 1046 C; 896 G; 1003 T; 1 other;
     ttggtgaccc ctaaacaaac acgatgagtg aagatagtga ttcgactgta cggtcagtaa        60
     aggcggacga agatggcggc gtgaccacgc ggcgtccagt aaagaagatg cgcgtttcca       120
     ttgaccgtcc gagcgacgat tcgtcgaacg atgatacccg acaaccggct aaacctccag       180
     cagtaacaag tcttaaagtg cctcaattct ctccggatga cccagaaata tggtttgcac       240
     ttctggaagg tcaatttgaa aactatggtg tcattaatga tcatgccaaa tttacccagg       300
     ttgtcgttaa cttggatatg caacatgcta aagctgttaa agatataatt ttagatccac       360
     cgccgaaagg tcgttatagc aaaattaaaa cagaactaat acgacgattg tctgcatcgc       420
     acgaaaaaaa agtaaaacag ctactcacac atgaagagct aggagatcgc aagccttcgc       480
     aatttttgcg ccacctacgt gatttggccg gaccgaatgt accagaggac tttatacgga       540
     ccatatggtg caatcgcctc cccaccaaca tccaaacggt gctggcttcg cagcccactc       600
     actctctaga gcagctgggt gatctcgctg accgcatcca ggaagtcaca gcaccatacc       660
     agatatccgc tgtagcgtct agtacttcaa gtcctgctag tgaaatcgca gagctccgaa       720
     aaatggtaga acacctcgct ataaagcttg atgagcacac tagaaaatca cgcacatcaa       780
     atcgtacgcg tcctcagctc cgtcagcgcc gcggttcttc aagccagccg agatcacgat       840
     caccctcaaa ctatcgtcgt tatccattat gctggtatca ttggaagtat ggctccaagg       900
     caaataattg catgaaaccg tgcgactacc aagcgggaaa cggcgcgggc actcagtaat       960
     ggcgacaacc gactgcccta cgtcaccagg tcgccttttc gtgacggacc aaaatatgaa      1020
     aacccaattt ctggtcgata ctggtagcga catttgtgtt tatccccggt cccggctacg      1080
     cgaacggcga gcacctacga cgtatcagct atccgcagcg aacgggtcga cgatagatac      1140
     ttacggcttc gtccacctgg atctaaatct gggccttcga cgttcttaca aatggcgttt      1200
     tgtggtagcg gacgttatta aacccattat aggcgtagac tttttatgtc attatgatct      1260
     tattgttgac tgtaaaaacc aaaaacttgt agataatacg actacactgt ttaccccggc      1320
     ttcaccggca tatagtactg acaacatatc atctgtaaag gtcctcactg gtgactcgcg      1380
     ttatcatatt ttgctgtcaa cggagttccc agaaattaca cggcctgctg gcacacagaa      1440
     aacttcacca cataatacac agcatcatat acgcactaca cctggtcctc cagtttcctg      1500
     tacgccgaga cgattggccc cagacaaact tttaatcgct aagaaggagt ttgaggcaat      1560
     gttagcgaac ggaacagcaa ggccttccga aagcccttgg tcatcaccgt tgcacttggc      1620
     gccaaaaaaa gacaatggct ggcgaccctg cggagattat aggcaattaa acgctcgtac      1680
     tattcccgac aaatacccga ttaaacacat acacgacttc gcacacaact tatcaggttg      1740
     taaaattttt agcacaatcg atctcgtaaa agcgtacaac caaataccag ttgccgaaga      1800
     ggacataccg aaaacagcta ttacgacacc ctttggtatg tacgaattcc catatatgac      1860
     atttggtcta cgtaacgcag ctcaaacgtt ccaacgcttc gttgatgaaa tgatgcgcgg      1920
     actagatttt atttattgct acttggatga ttttgtaatt ttcagtgagg atgaagaaca      1980
     acacatagat cacctacgcc agatatttat cagactccga aattacggca tggtcctgaa      2040
     cgtatcgaag tgtgtatttg gagcttcatc ggtaaccttt ctgggttacc gcatctctga      2100
     aagcggaacc ataccactcg acgagaaggt tcaggccatt cgtgattttc caccaccaaa      2160
     ggacgtcagg acgcttagac ggtttttggg catggcaaac ttttataggc ggtttttgcc      2220
     taaagcagct caaatacagg cgcctctgaa tgccctgctg ataggagcag taaagggctc      2280
     aacgcccata tccctaagcg acgaagctct gaaggctttc tcagacgtta aggaaagtct      2340
     ttccaaggca gctcttttgg cgcacccaga ttgtagtgcg aagctagcct tggtgacaga      2400
     tgcttctgac gtcgctattg gggcggtgtt gcagcaattt aaagatgaag cgtgggagcc      2460
     gctggcgttc ttctctcgca ggctaaattc aacgcagcaa cattactcac cgtatgatcg      2520
     cgagttattg gcaatttatg aggccattaa atacttccgc cacatgcttg aagcgagaca      2580
     cttcacagtg tacacggatc ataagccgat tagttacgca tttcatgaac gaaaaagtaa      2640
     ctgctcgcct agacaattcc gtcacctaga ctatatatcc caattcacga ccgatataag      2700
     acatatatcc ggcaaaagta acgtcgtcgc cgatgcctta tcgcgtgtcg aagagttgag      2760
     taaaccagtc tgtctagcca gtctcgctca agcccagcgt acagatgaag aattagctga      2820
     atacctagct cacacgaact cttctcttcg catccgtgag atacaatatc ctgggagcca      2880
     aaataccttg tactgcgacg tcagcacatt gactcccagg ccttttgtgc ccaaatgctt      2940
     gagaaaacaa gtttttcaaa gcctccactc gcttagccac cccggcatca aagctacggt      3000
     acaattagtg gcaaaaagat ttgtatggcc gagaatgaga aaagactgcc gagtgtgggc      3060
     gcaggcatgt ctagcttgtc agcgcgtcaa ggttactcga catgtgtcca caccgtgggg      3120
     caatttcgat gtacctagcg cgcgctttat gtttatccac atcgacatca taggcccgct      3180
     acccatttca catggcaaca ggtactgcct gaccgccata gaccgattta cacgatggcc      3240
     ggaagtcata ccaatacctg acatcacggc agagacagta gcaaaagccc tcttatccgg      3300
     atggatatcc aggttcggtt gccccacaga tgttgttaca gatcgtggcc gtcaatttga      3360
     gtccacttta tttaagtatc tgtcaaaaat atccggtttt cgtcacaaac gtactacagc      3420
     ctaccatcca tcgtgcaacg gattagtaga acgctttcac cgacaactta aggcgtctat      3480
     tacttgccac gccgatgaaa gttggactga agttttacct ctcgtgttac tgggcattcg      3540
     aagtagcttc aaagaagacc tscaatcgtc atccgctgag ttggtatacg gggaaccgct      3600
     gagacttccc ggcgaatttt ttgatatatc tacaacttgt acgtcagata tatcagattt      3660
     ttcagcaagg ttacgttcat tcgcagaaaa actgaaacca gtccctgcgt ctcatcatag      3720
     taagcagaaa acgtttattt ttaaagagct cgcttctacg aattacgtat tcctccgcga      3780
     agacgcttta cgggcgtcgt tacaaccagc ttacactggc ccgtataagg tgttggaaaa      3840
     aagtgacaag gtgtacaaaa tactagttaa aggcaagccg caaactgtta caatagaccg      3900
     ccttaaacct gcctatacag tagcagatga agagaatatg tcagggaaca ctactgtaag      3960
     tactccacct acattacaac cacataccgc catttcgaac accaccacta ccactaccgc      4020
     cacaacctat cctaggatag cacaaggaaa ggtaacacgt tcggggagac gggtacattt      4080
     cccagactac tatcgcccct aaccaggtct ctggggggga gtag                       4124
//
ID   Gypsy-10_MeUr-LTR repbase;    DNA;    INV; 634 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-634
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3063-3063 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 634 BP; 175 A; 146 C; 94 G; 219 T; 0 other;
     tgtagtgatc tccataattc ttgtcaatat tagtatttat tttacacaaa cttacaaata        60
     tttattattt aatattttat ttattcattt aatacataca tacctccaca cacgcacaca       120
     cacacacaca tataacatac acatgataat tatatttcta ctatacacat tatttatatt       180
     gtgttcatac cggcgcaggc gctggccgag cgcatggaaa cagtacgctc cgaataacgg       240
     tatatcaacc ggccggccgc cgccgctcac aacgttcaca aacagtcgac ctacgatcgt       300
     tccgtgcaaa actagtgtcg cccgtagctt gacgcttttt gtgcttgtgc ctagaatatt       360
     agtgtagtgc ataagactat gcttcagtag attatctaaa acgtttagat attgtttctg       420
     tgctatcgct tcactccttc cttctatttt agtagtaatt atttctcttt gtgttcttgt       480
     catacttgtg tcttacgtgc tcgtgtaata aatgcttaat agtgctatcc gactttcttc       540
     tgcttctcgc cttacgaaat acgaacactg ctacgtgcac acaattggtt tgacctatta       600
     cacgtactat atactcctat aagtaattac caca                                   634
//
ID   Gypsy-10_MoPha-I repbase;    DNA;    INV; 4828 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4828
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1124-1124 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           493..4779
FT                 /product="Gypsy-10_MoPha-I_1p"
FT                 /note="SAP domain, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDPNSLTVVELKGVLREMNCSTNGSKNELIERLKAAD
FT                 PSGAWMNKVRKGNPHDEQQHTQGAERLGDGNEAGGPNPTECTTILMRELEI
FT                 RERERRLMERELEIVRRELDMMRSANLRDVSTPVVPSGSEEVEANSRPRVN
FT                 INSVAELLPPFSGTDVDFDRWERQLRLLKATYALDDKATRLLIGSRLKGKA
FT                 LDWLFSKSEFLEMSLEQLLAEMKSMFRHKVSKMVLRKEFEKRIWKHGESFS
FT                 EYLHDKVILANKVPVEEEDVVEYIIEGIPDTTLRDQARIQKLKSKESLLEA
FT                 FEKITMRQKTGPNVGPVIKKKSNNSIAKDDKASGTDDDKAARGVIRCYNCN
FT                 SLGHLARNCRQPKREQGACFSCGAQGHISKNCKAAATQEKSETKEQVSNVE
FT                 VMSSEGDNYIRNVKYELSNEPNCVSLELDSLFDTGSAVSFIKIKSVPHNIM
FT                 RNAEGLSTRFCGINNSQLRILGAVRARMSCDGTTKDETTLLVVPNDTMKPT
FT                 VILGRDALRSLGYTLQKRQDQLEACVEEILSIDVSDERDQPSHALNVNPEL
FT                 PITVQTEIREIYEKEYVRPERPEAPVVNAELKLELKEHQPFSVMPRRLSWT
FT                 EKEVLRDLLDKLLKRKVIRVSESEYSSPIVLVKKKNGEHRMCIDYRVLNKY
FT                 LLRSNYPMPLIEDQLDVLADKKYFTLLDLKDGFHHIKIAKESIKYTSFVTP
FT                 LGQYECEKMPFGLKTAPLRFQKFINDVLREFIDSGDLVVYMDDFMIATSTI
FT                 EHHLCVLRKVFRVLVNNLLELRIDKCKFVYTRVEYLGYIISEKGISPTKEG
FT                 VEAILNFPVPKNVREVRGFVGLCSYFRKFIERFSLIAKPLYDLLKKDVAFE
FT                 FKECQLRAFEELKAKLASTPILSIYNPRDSTELHCDASSHGFGAILFQKKQ
FT                 DLKLHPIFYYSKRTTETESRYHSFELETLAIVYALRRFRVYLHGVKFKIVT
FT                 DCQSLKLTLDKRDINPRISRWALELQEFDYTVEHRKGTRMSHVDCLSRCYF
FT                 VYVVEDNTLEFNLSVSQSQDASIKELQSKLEKTEDKLYEMRNGIVYRKKEG
FT                 KLLFVVPSSMEASLLYKYHNELGHMGIDKVCEMINRNYWFPKIRSKVGTHI
FT                 ANCLKCIAYSPKSGKREGMLQAIPKEGRPFEVLHIDHFGPVVKDSPKKHVL
FT                 VVVDAFTKFVKLYATKSTSSQEATNCLEQYFYNYSSPTTIISDRGRCFCSK
FT                 EFDNFILDHDIKHIKVATASPQANGQAERVNRVIQPMLAKLVDSRDRKNWY
FT                 KVLPQIEYALNNVPHKSTGDTPSHLLFGTNQRMKPADNVREYLESQSQNDT
FT                 RDLDVIRNAAKMQICKAQEYNKTYVDKKRKKPHEYAEGDSVMVRNFESTPG
FT                 TPHKLIPQFRGPYKVIKKLRNNRYVVADVDGHQVTQRPYQGVWEPANMRPW
FT                 KRTDSETNHESEEDD"
XX
SQ   Sequence 4828 BP; 1477 A; 909 C; 1264 G; 1178 T; 0 other;
     gttctcagaa gtgggatctg agctgcgtga tcgaaacagt tcggcgagtc cgtgggagct        60
     gtgtgccagc ggatgttcga aggaaatcgt tacgaagaag agagaaactt ctagaacgcg       120
     ggcgtgacgc gtcgttgctg tgtgcatcga ggacggcgtg tctcgtgcgt gtcaactgtg       180
     tgctttgcga gtctgctgtg tgcgtcgcaa gcgttttaaa aaattcggcg aatccgtggg       240
     agctgtgtgc cagcggagac tcaaagagaa gttgcgagaa ggagagagaa acttctagaa       300
     cgcgggcgtt acgtgccgtt gctgtgtgca tcgaggacgg cgtgtctcgt gcgtgtcgac       360
     tgtgtgcttt gcgagtctgc tgtgtgcatc gcgagcgttt cgaagagatc agagacgtta       420
     caaggagggt ttacgtgcga aagagataaa gtacattctc aaagaaagtt gtgtcagtga       480
     gaaaccgcca ttatggaccc gaacagtctt acggtggtag aactaaaagg cgtgctgcgc       540
     gagatgaact gctcgacgaa cgggtccaag aatgagttga tcgagagatt gaaagccgca       600
     gatccgtccg gggcatggat gaacaaggtg aggaagggga atcctcacga cgaacagcaa       660
     catacgcaag gtgcagagag gttaggggac ggaaacgaag caggaggacc gaaccctacc       720
     gaatgtacca ccatcctgat gcgtgagttg gagatacgtg agagagagag gcgcctgatg       780
     gagcgagagt tggaaatcgt ccgtcgggaa ctggatatga tgcgaagtgc taacctgcga       840
     gatgtgtcca cacctgttgt gccttccggg tcagaagagg tagaagctaa ctctaggccc       900
     agggtaaata tcaattcggt cgccgagtta ttaccacctt tcagcggaac agacgtagac       960
     tttgatcgat gggagcgtca actgaggctg ctcaaagcaa cgtatgcgct agatgataaa      1020
     gcaacgagat tattgattgg ctcaaggctc aaaggtaaag cgcttgactg gctattctcg      1080
     aaatctgaat ttttagagat gtctttagaa cagctgctgg cggaaatgaa gagtatgttt      1140
     cgacacaagg ttagcaagat ggtcctcagg aaggagtttg agaagcgcat atggaagcat      1200
     ggagaatcat tcagcgaata tctccacgac aaagtaattt tggcgaataa ggttcctgta      1260
     gaagaagaag acgtcgtgga atatattata gaagggatac ccgatactac actgagggac      1320
     caagctcgta ttcaaaagct caagtccaaa gaaagtttac tggaggcctt tgaaaaaatc      1380
     acgatgcgac agaagaccgg accaaatgtt ggtcccgtta tcaagaagaa gtcgaataat      1440
     tccattgcca aagatgataa ggctagcggc acagacgacg ataaggcggc gagaggggtc      1500
     attcgctgct acaactgcaa cagtctagga cacctggcaa ggaattgcag gcagccgaaa      1560
     agggagcaag gtgcctgctt cagctgcggt gctcagggcc acatctcgaa gaattgtaaa      1620
     gccgccgcaa cccaggagaa atcagagacc aaggagcaag tgtcaaacgt agaggttatg      1680
     tcttcagaag gagacaacta tatacggaac gtaaagtacg aactgtcaaa cgaacctaat      1740
     tgcgtgagtt tagaacttga ttcgttattc gataccggaa gcgccgtaag ttttatcaaa      1800
     ataaagtctg taccccataa tattatgcga aatgcggaag ggttaagtac ccgattttgt      1860
     ggaatcaata attctcaact aagaatttta ggtgctgtaa gagcgagaat gtcctgtgat      1920
     ggtacaacta aggacgagac taccctgttg gtagtcccga acgatactat gaagccgaca      1980
     gtaattctgg gacgtgatgc gctgcgatcg ctaggttaca ctctgcaaaa gcgccaggat      2040
     caattggagg catgtgtgga agaaatttta agtatcgatg tatctgacga aagggatcaa      2100
     ccgtcccatg cgttgaacgt caacccggaa ttgccaataa ctgtacaaac cgagatacgc      2160
     gaaatttatg agaaggagta cgtaaggcca gagcgtcctg aagctccagt ggtaaacgcg      2220
     gaattaaagc tagagttaaa agaacaccaa cccttctctg tcatgcctag acgtttatca      2280
     tggacagaga aagaggtttt gcgagatttg ttagataaat tacttaaaag aaaggtaatt      2340
     agggttagtg aatctgagta ttcatcacct atagttttag tcaaaaagaa aaacggagaa      2400
     catagaatgt gtatcgatta ccgcgtgctg aacaagtacc tactgcgtag taattatcct      2460
     atgcctttga tcgaggatca gctagacgtc ttagcggata agaagtactt tactttactc      2520
     gatcttaagg atggcttcca ccatataaaa atcgcgaaag agtcaattaa atacacgtcg      2580
     ttcgtgacgc cgttagggca atacgagtgt gaaaaaatgc cgttcgggct taaaacggcc      2640
     cctttaagat ttcaaaaatt cattaatgac gttttacgtg aatttattga ttcaggtgac      2700
     ctggtggtct acatggatga ctttatgatt gcgacatcta ctattgaaca tcatctctgt      2760
     gtattgcgca aagtgtttcg ggtattagtc aataacctgc tagaattaag aatagacaaa      2820
     tgtaagtttg tatacactag ggtagagtat ttaggctaca tcatttcgga aaagggcata      2880
     agtccgacga aggaaggagt cgaagccata cttaactttc ctgtgcctaa gaacgtcaga      2940
     gaagtacgag ggtttgtagg actatgctct tactttagaa agtttattga gaggttttcc      3000
     ttgatagcta aaccccttta tgatttgttg aagaaagatg ttgcttttga gtttaaggag      3060
     tgccaattga gggcgtttga agaattgaag gctaagctgg cttctactcc tatcctatcc      3120
     atttacaatc cacgagatag cacggaactg cattgtgacg ctagctctca tggattcggc      3180
     gcgattttgt tccagaaaaa gcaagaccta aagttacacc ccattttcta ttactcaaag      3240
     agaacaacgg aaaccgaaag tagataccat agtttcgagc tggagacact agcaatagta      3300
     tatgcgttgc gaagatttcg ggtgtatttg catggtgtga agtttaaaat tgttacggac      3360
     tgccaatctt taaagctgac cctggacaaa agggacatta acccacgtat ttctaggtgg      3420
     gccttggagt tgcaagagtt cgactataca gtagagcatc gtaagggaac gaggatgagt      3480
     catgtagatt gtttgagcag atgctatttt gtttatgtcg tcgaggataa tactcttgaa      3540
     tttaatttat cagtgagtca gagtcaggac gccagcatta aggagttgca gtctaagcta      3600
     gaaaaaaccg aagataagtt atacgagatg cgaaatggta ttgtatatcg aaaaaaggaa      3660
     ggaaagctgt tgttcgttgt gcctagtagt atggaagcga gccttctgta taagtatcac      3720
     aatgagttag gacatatggg gatagataag gtgtgcgaaa tgattaaccg gaactattgg      3780
     tttccaaaaa ttcgaagtaa agtcggaacg catatcgcga attgtctaaa gtgtattgcg      3840
     tactctccaa agtcgggaaa aagggaagga atgttacaag caattcccaa ggaaggtcga      3900
     ccttttgaag tgcttcatat tgatcacttt ggtccggtag tgaaagattc cccaaagaag      3960
     catgtgttag tagtcgtgga tgcttttacg aaattcgtca aattatacgc caccaagtcg      4020
     acctcgagtc aggaagctac aaattgcttg gaacagtact tctataacta tagtagccca      4080
     acaactataa tctctgatcg cgggagatgt ttttgttcaa aggagttcga caattttata      4140
     ttggatcacg acattaaaca cataaaggta gcgacagctt cgcctcaagc taatggccag      4200
     gctgagcgcg tgaaccgagt tatacagcct atgttggcta aactagttga tagtagagac      4260
     cggaaaaatt ggtataaggt gttaccacaa atcgaatacg cgttgaacaa cgtaccccat      4320
     aaatccactg gggatacgcc tagtcaccta ctgtttggta caaatcagcg tatgaaacct      4380
     gcggataatg tgcgagaata cctcgaaagt cagtctcaga atgacacacg cgatttagat      4440
     gtaattagaa acgcagctaa gatgcaaatt tgtaaggctc aggaatataa caaaacctat      4500
     gttgacaaga agcgaaagaa accgcacgag tatgctgaag gtgattctgt gatggtacgg      4560
     aactttgaga gcacacctgg taccccacac aagttgattc cgcagtttcg agggccctat      4620
     aaagtcatta aaaagttacg taataaccga tacgttgtag cggacgtaga tggtcatcag      4680
     gtgactcaaa gaccgtatca aggcgtgtgg gagcctgcta atatgcgtcc gtggaaaaga      4740
     accgatagcg agacgaacca tgaaagcgag gaggatgatt aacatgtaca cggccgagga      4800
     cggcctgcgg gtcaggactg gccgaatc                                         4828
//
ID   Gypsy-10_MoPha-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-237
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1174-1174 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 237 BP; 69 A; 47 C; 71 G; 50 T; 0 other;
     tgtaagcgag ttacacgtct gaagcttttg tatgagtctg tccgtgcgta tgtaagtctg        60
     ttcgtgtatg ggcgagaggc ctcgtgcgag gactcgagag agggcgcggg agagaagacg       120
     acagtgaagc agtatggcgg aacgaccggc aagacacaac gtgcgtcgat ctgactcggc       180
     agcccgatta taaagataaa actcacagac gcgagattaa taaaattata cattaca          237
//
ID   Gypsy-10_MSe-I repbase;    DNA;    INV; 3947 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-3947
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 985-985 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 3947 BP; 1058 A; 991 C; 893 G; 1005 T; 0 other;
     ttggtgacct ccacacggac caaaatttaa aatggagaaa gcacgcggca caccgtctac        60
     agctagtgat gggaaagcgt cgacagatcg tgatggcgag gtatacaagg tgagcatacg       120
     cattccacct ttttggcctg aagaaccgga gatttggttc gcccaagtgg aaggacaatt       180
     cgctattaat agaataacca gtgaccagac taaatttaat catgttatta accaactgga       240
     caatcagtac tcgaaagagg taaaagatat tattataaaa ccaccagcgg aaaataaata       300
     tgacacatta aaagcgttgc tcattaagcg attaactgag tcgaatgaaa agaagcttaa       360
     gcaattactc atgcatgaag agctcgggga tcgaaaaccg tcccgctttc ttcgacattt       420
     acaaagtctc gccggatccg atgttccaga cgactttctg aagaccatat ggatcagtcg       480
     tctcccttat ggcattcaga cagtacttgc aggtcaacca ggtacaactt cgcttgaaga       540
     tctggctgat ttggcggatc gagtcaacga cttatctacg acgtctccaa aggtcgcctc       600
     cgtgagtcaa gataatccca gttctgtaat cagtgatttg acacgggaag tagccgaact       660
     tcggaggcaa ttccagaagc tggcatccca gagaagtgga agatctaggt cccgaactgc       720
     tcgaccccgt agcggatcat cttcaagaca acggtcacag tccaactacc gaaaatatcc       780
     actttgttgg taccacgcca agtttggaga cagggccagc aaatgcgtcc gcccctgcga       840
     ttataagtcg gaaaactcga agggcagtcg gtaatggcga ctgacgattg cccatcttct       900
     gctggtcgcc ttttcgtaac cgaccgtttc tcgaagacgc aatttttggt cgacaccggc       960
     agcgacctct gtgttttccc acgttcgtta ctgcgtgatc gtcgtgctcc aacggagttt      1020
     caactatgcg ccgccaacgg taccagcatc tcgacatacg gctatgcaca tttaaattta      1080
     aatcttggtt tacggagaac ttttacttgg cgttttgtag tagcagacgt atcaaagcct      1140
     attataggcg tagacttcct taatttttat aaccttatgg tggattgtag aaataagcgc      1200
     ctagttgata ataccacctc tgtaactacc gtagctagcc tcgtggttga tagtcgtagt      1260
     ctttattcta ttaaagtctc aaccgggaat actcaatatc ataaaattct taatgaattc      1320
     ccagagataa cccgaccagc tggtacgcat cggactatcc cacacaacac cgtacaccac      1380
     atacgtacga catcagggcc tccagtttcc tcaccgcctc gtcgcctcgc tcctgacaaa      1440
     cttaaaatag cccagcaaga atttcaatct atgcttgcta gcgggattgc cagaccatca      1500
     gaaagtccat ggtcctcacc gttacatctg gcgccaaaaa aggacaatgg ttggcgtccg      1560
     tgtggtgact accgcatgtt gaacgctcgc actgtgcctg acaggtaccc gattaggcat      1620
     attcacgatt ttgcccattc tatagctggt tgcaaaatat ttagcacctt agacctggta      1680
     aaagcctacc atcagatacc tgtcagccca gaggatattc ctaaaacagc gatcaccaca      1740
     ccgttcggat tatacgaatt tccttttatg accttcggtc ttcgtaacgc gggccaaact      1800
     tttcaacggt tcgtggacga gatgactagg ggtcttgatt ttgtattttg ttacctggac      1860
     gattttttag tattttcaca agaccctaaa cagcatgagg agcacctccg tatcatcttt      1920
     ggcagactta aggattacgg catggtgatc aacacgtcaa agtgcgtttt cggagcagag      1980
     gaggtaacgt ttttaggtta cagcatctcc gaacgaggct cccgaccact tgacgccaaa      2040
     gtccagacta taaaggattt ccctgtccca acaaacgtgc ggcagttaag ggcattttgg      2100
     gtatgttaaa tttttatagg agattcctcc cacgcgccgc ccaaattcaa gctcctttgc      2160
     acttattgtt aactgggtcg gttaagggat cacatccgat tgatttaaca ggtgacgccc      2220
     tagtagcctt cgaagcctgc aaggaaagcc ttgctaacgc cgctctatta gcccacccag      2280
     actgcaccgc acaactcgcc ctagtgactg atgcgtcaga caaggcgatt ggcgcagttc      2340
     tccaacagct gaaggacgac tcgtggcagc ctttagcttt tttctctcag aagttaagcc      2400
     cttctcaggt aaagtactcg ccttatgata gggaactgct cgccatttac gaagcagtca      2460
     aatacttccg acatatgctc gaggccaggc atttcgttgt ctatactgac cacaaaccga      2520
     tcagtttcgc cttccacgaa aggaagaaaa actgttcgcc aaggcagtat agacaccttg      2580
     atttcatctc tcagttcacg accgacatcc gtcatatatc agggaaagac aacgtcgtag      2640
     ccgataccct gtcgcggatt gaagaactgg gagtacctgt cgacctcgag acattagcca      2700
     agggccaagc ttcggatcct gaactctcta agctattaga agaaggttca tcactgcgcc      2760
     tggagaaact tcaagtacct ggaagtcgag tacccctgta ctgcgacgtc agtacgccga      2820
     cttctagacc attcgtgcca aagttctttc ggaagcagat ctttgacagt cttcatgcat      2880
     acagtcaccc tggcgccaat gcatcggcca agttaattgc cgaacgttac gtgtggccag      2940
     gaatacgtaa agactgcaga gactgggcgc gatcctgtat ttcatgccag cgcgccaagg      3000
     tgagtcgtca tgtgactgct ccactaggca gcttcaattt acctcgagcg cgctttaaac      3060
     atatccacat tgaccttgtg ggacctctgc ctctctcatg tgggtatcgg tattgcctaa      3120
     cggcagttga tcgtttcact cgatggccgg aagcaatacc gattgaagac atcacagcag      3180
     aaacagttgc caaagcctta ctgtcaggct ggatagctcg attcggctgt cctacaaaca      3240
     ttacaactga tcgtggccgc cagttcgagt cggccctctt tcagtgtttg tctaggatag      3300
     ccggattcga gcataggcag actacagctt accacccggc atgtaacggc ctggtggagc      3360
     ggtttcacag gcaactcaaa gctgcgatcg tatgccatgg gaatgataga tggaccgagt      3420
     cactaccgtg ggtgttgtta ggtattcgaa ctgccgttaa agaagacctc cagtcttcct      3480
     cggccgaatt ggtgtacggc gaaccattga gattaccggg cgaatttttc gactctacta      3540
     cggtgggtac cacggatacg tccgaattta ttgcccgtat tagaaacttc gccagaaaac      3600
     tacaaccgac acctacaact catcatggca agccgaaaat ttttattttt aaggatctcg      3660
     ccacctgtga tcacgttttc cttcgtgaag acgcttcacg tggttcactc caaccggctt      3720
     attcaggtcc tcataaagtt ttgtatagag gggataaaat ttttaaaata ttgtttaaaa      3780
     acaaggaggt cacagtatcg atagaccgaa ttaaaccggc cttcatactg tctgaccata      3840
     acgatgagcc ctcaccagat attacaaaag agtacgtcac tcgttctgga cgtcgggtga      3900
     aattcaccga tttttataga ccttgacggc ctctggaggg ggggtgg                    3947
//
ID   Gypsy-10_MSe-LTR repbase;    DNA;    INV; 636 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-636
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 936-936 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 636 BP; 171 A; 135 C; 116 G; 214 T; 0 other;
     tgtaggcaac tttcctacac tgaacataat tatatataaa atatctatct acataaaaag        60
     tatattttta cattatatat atttatttac acttacagta actattcaca acaatcataa       120
     tattatattt attacttaga tatatacaag cacattactt caatgcgtaa ccatttgtcg       180
     atgtcgatat caacatcaac catcgagcag tgtcacacct tctgcgtata ggtatatcct       240
     tacgcacaag gagtcagcgg tgtgaggtgc ggtgcggtgc gcacacgttg cagcgccacg       300
     tcacatcgcc ggctgaccag ccagtcgaga cctgtaatag acgcggaacg cacgctgctc       360
     gcttcccgct accgctgccg cttacgctac gcggaatgtt atatttgtat gctagttcct       420
     cttaattctt cctttctgtg ttgtaatgtt gaactgtcca ttgttacttc actgtagact       480
     attttgtgct tgtgcttctg tttaatggtg ccttctgtgt tgtgtgttgg atataactgt       540
     ataactgtat ggagtgtttt tcttttagac acacataaaa ataaggtctg cattaattgt       600
     cacccagtca ttggggatca tagcaaaact cttata                                 636
//
ID   Gypsy-10_OrIn-I repbase;    DNA;    INV; 5610 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5610
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1551-1551 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1976
FT                 /product="Gypsy-10_OrIn-I_1p"
FT                 /translation="MSEPVCDVCEEAYAASEAGICTACNSSVHLPCSQITV
FT                 VNYKKLGQELKAKWKGPCCDPKAQAKIMLKSTLAFRQGVEKQFTTFSGRLD
FT                 ELSSAIQSNQESTLNKIEALSKKFGKLKNEFDNFKQASESKLSKLVSPTKP
FT                 LQSTLNTSDTLGNTTPKVAKTALVGLTHPAKDLTSKLVGLGLDEAAISNIL
FT                 DWVEPKVPEPDPVTDFSALGVASQSFLCSGGESQDSDDDDSSTSSSDYQKK
FT                 SKRFYNKSLSPQIIKRLQKLPSFVLYRPFTIFKFLLQLAPIAHRLHDKFHK
FT                 ILSIIADSTSNTTSANFLYNAMTDKNISFELFSRSLITHCITPRQLAHAKS
FT                 QLLFYPQGNEDLREYIETQVTLLKLFHEMDEAENCRNLLNSVNPKYLPLIG
FT                 NVHEIKTHQQLFAKLKSVEINIHERFEDGYDNEFVPNFNPRFFRNNSQKNN
FT                 FHFRKNKHFSQGSRYNYNKNKPFNKNNPSGYNNNDSYHNSNRNNWRNNPFN
FT                 NSNRNNSQSKTGNSSHKNDQGNSSNNFYGNKKSHQSGNNRSQSSNSNYHRN
FT                 KNRTFKKEVPFDKSLAALQETCNNFLEIQKAFSSITGPNSEKTPQTSTNSN
FT                 NKSKN"
FT   CDS           1961..5167
FT                 /product="Gypsy-10_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QQIKKLISTPRSESLSTRFTASLPYIHLKIYDRKIPA
FT                 LLDSGSTVNVISRECLLSLDNKITKSFNKDSEKSVVSITNNTVKFLSAGKL
FT                 KIKFANLSWNLEFYVLESMPVPLILGFNFFNTTGLTLDPVARVISFANNPL
FT                 KTYPLMEVNDNTCFGGILQPSFEVMHLSISDKLGFTANDVDHQRENLKRRF
FT                 LDLFPDVLTDRLGKAKDYYLKLYMKDIPPINQAAYPLNPVDLQMMRDIVAD
FT                 LIAQDVVEPCNSPWASPAFLVPKKNSNMKRLVVNYQKINQNIIFSAWPLPH
FT                 IQHVFDHLHNAKFFTIFDLSLSFHQLPLHPDSRQFTGFKTPFGHFQFKRVP
FT                 MGISLGSQSLTEYLERIFYKVKYQFLWNYLDDLIVYSRTEEEHVNHVHQTL
FT                 QILRENGLTIKPEKTKFFQTTVRYLGHQISHNSVQIDPDRVMAIKELTVPT
FT                 TLKQTLSFLGVCSFFARFIPNFSEVAAPLHNLKSNSSGLVWDQSCQTAFES
FT                 LKSLLTSPPILAIPSFSKPFLLFTDASSYAVGSLLAQEDEHGGTRPLAFYS
FT                 KKLSKSELNYTTYKKELYSVILSIRHFKQFLSHNPFKLFTDCSGLASFLRG
FT                 DRSRIISNPAIRWISELDSFKFEVFHVKGKNNSVADYLSRFSSAESSAYDM
FT                 ENPDESITCFTSPLKELPSLFDNFLDHQLADPYISQQLTDRESNVKAIRNL
FT                 IYFIPSDNTNLKKILVPEVLKSAIFQYFHTNTYGAHLGFSKTLSRIRHLFT
FT                 YPGMNKDIKSKVAKCDICARIKPNNNPYPTILHSTPPSRPLERLYLDFVGP
FT                 LPTSSSGNKFILIAVDGFTKFIFAIPCRVSTAESVIRILKQHIFAQHGLPT
FT                 HLITDRQSCFRSASFRNFLFDLGITYIANITHYPQANLAERYISGLKKAIR
FT                 AYHHDNQKKWEENLFLFISALNSAQNDTTKSAPSLTFLGRDLQHPLILKLN
FT                 IEHSLQHLSQDKLSDLLQDTYANLLKSYKERKRTYEKVHDPSNLPKVGDIV
FT                 FKRNFILSSKSKNIQASLAHKFVGPFEVIKVFNRVSYLLRSVDNPDVTVQA
FT                 HLTQLKKQSSPS"
XX
SQ   Sequence 5610 BP; 1724 A; 1212 C; 904 G; 1768 T; 2 other;
     aaaagtggta gcagagctta caccgtcctt tttttttaat ctgttttatc tgttttatct        60
     gttatttttt ggttttggag cctttattgt ttgtgaaaaa ttttttttta aattctaaat       120
     ttcattgtaa gccgatactt atccttaata ttatctttgt cctcgccatg tcagagcctg       180
     tttgtgatgt gtgtgaggag gcatacgccg cttcagaagc aggaatttgc actgcctgca       240
     attcttcagt ccatctacct tgttcacaaa ttactgtcgt aaattataaa aaacttgggc       300
     aggaacttaa agccaaatgg aagggtcctt gttgtgatcc gaaagcacaa gccaaaatta       360
     tgttaaagtc cactttagcc tttcgtcaag gcgttgaaaa acaatttacc actttcagtg       420
     ggcgtctaga cgagttatct tcagccattc agtccaatca agaatctact ttgaataaaa       480
     ttgaagcctt gagcaaaaaa tttgggaaac tcaagaatga gttcgataac tttaagcaag       540
     cttctgaatc taaattgtca aaacttgtct ctcctaccaa acctttacaa tcgactctca       600
     acacttccga tactttgggt aacacgacac caaaagtcgc aaaaacggca ctcgtcggcc       660
     tcacacatcc tgctaaggat ctcacatcca aattagtagg attagggctc gatgaggccg       720
     cgatatcaaa tattttagat tgggtcgaac ctaaggtccc ggagccagac cccgtgaccg       780
     acttttcggc actgggggtg gcatcacaaa gttttttgtg ttctggtggg gaatctcaag       840
     attcagacga tgacgatagc tcgacttcct catcagacta tcagaaaaaa tcgaaacgat       900
     tctataataa gtccttatcc cctcaaataa ttaagcgatt acaaaaattg ccttcttttg       960
     ttttatatcg gcctttcacg atttttaaat ttcttttaca attggcacct atcgcgcatc      1020
     gtttacatga taaatttcat aaaattttat caattattgc cgattcaact tcaaatacta      1080
     cgtctgccaa cttcttgtac aacgcaatga ccgataaaaa cataagtttc gaattgtttt      1140
     ctcgttctct catcactcat tgtataacgc ctcgacaatt agcgcatgcc aaatcacaac      1200
     ttttatttta tcctcagggt aatgaggatt taagagaata tattgaaacc caggttactc      1260
     ttttaaaatt atttcatgag atggatgagg cagagaattg caggaacttg ctcaactctg      1320
     ttaatccgaa atatttgcca cttataggca acgtccatga gataaaaact catcaacaac      1380
     tttttgctaa attaaagtct gtcgaaataa acattcacga aagatttgaa gacggatatg      1440
     ataacgagtt tgttccaaat tttaatcccc gatttttccg gaataattca caaaaaaata      1500
     attttcattt tcgaaagaat aagcatttta gccaaggttc tcgatataat tataataaaa      1560
     acaaaccttt taacaaaaat aatccatccg gctataacaa taatgattct tatcataatt      1620
     ccaatcggaa taattggcgc aataacccat ttaacaattc aaatcgaaat aattcacaat      1680
     ctaaaaccgg gaactccagt cacaaaaatg atcagggtaa ttcctccaac aatttttatg      1740
     gtaacaaaaa aagccatcar tcgggaaaca acagatccca atcaagcaat tccaattacc      1800
     atagaaataa aaatagaacg tttaagaagg aagtcccctt tgacaaatct cttgccgcct      1860
     tgcaggagac ttgcaacaat tttttggaaa ttcaaaaagc ctttagctct atcacagggc      1920
     caaatagcga aaaaacccct caaacttcga caaattctaa caacaaatca aaaaactaat      1980
     tagtaccccg cgctccgaat ctttgtctac ccgttttacc gcttcgctgc cttatatcca      2040
     cttgaaaatt tacgatagaa aaatcccagc gcttttagac tcgggatcaa cggtaaacgt      2100
     catttctcgg gaatgtttac tttctttaga taataagatt actaaatcct ttaataaaga      2160
     ttcggaaaaa tcagtcgtat ccattacgaa taacactgtg aaatttctta gtgcggggaa      2220
     attaaaaata aaatttgcca atttatcttg gaacttagaa ttctacgttt tagaatcgat      2280
     gcctgtgcct ttaattttgg gttttaattt tttcaatacg accggactca ctttagatcc      2340
     agtcgcacga gttatctctt tcgccaataa tcccctcaaa acttatccct taatggaggt      2400
     caacgataac acttgtttcg gcggaatttt acaaccttcc tttgaagtta tgcatttatc      2460
     catttccgat aaattaggtt ttacggctaa tgacgttgac caccaacggg aaaatttaaa      2520
     acggagattt ttggatcttt ttcctgatgt cctgacagac agactaggaa aagccaaaga      2580
     ttattattta aagctctaca tgaaagatat accaccaatc aatcaagccg cataccccct      2640
     aaatcctgta gatttacaga tgatgaggga catcgttgcg gatctcatag cacaagatgt      2700
     tgtggaacca tgcaattcgc catgggcttc tccagckttt ctcgtcccaa aaaagaactc      2760
     gaatatgaaa cgtttagtgg ttaattacca aaaaattaac caaaacatta ttttttctgc      2820
     ttggcctttg ccacacattc agcacgtctt cgatcatctt cacaacgcca aattctttac      2880
     catttttgat ctctccttat cttttcatca attgccctta catccagact cgagacaatt      2940
     tactggcttt aaaacacctt ttgggcactt tcaatttaaa agagtcccca tgggcatttc      3000
     cttgggaagt caatcattga cggaatatct agagagaatt ttttacaagg taaaatacca      3060
     gtttctttgg aattatctag acgatctgat agtttattca cgaacggaag aagaacacgt      3120
     taaccacgta caccaaacgc tgcaaatatt gcgtgaaaac ggtttaacca taaaaccgga      3180
     gaagacaaaa ttttttcaaa ccactgtacg atacttagga catcaaattt cccataatag      3240
     tgtccaaatc gatcctgacc gcgtaatggc gatcaaagaa ttaacagtcc ccacgacctt      3300
     gaaacagact ctttcctttt taggcgtctg ctcctttttt gctcgcttta ttccgaactt      3360
     ttccgaggtg gctgcgcctt tacataattt aaaatctaac tcttccggtc tcgtgtggga      3420
     tcaatcttgc cagacagctt ttgagtcttt aaaaagtcta ttgacttctc cgccgattct      3480
     ggccatacct agtttttcta aaccgttttt attattcact gacgcatcca gttatgccgt      3540
     aggaagtctc cttgctcaag aggatgagca tggtggcact cgtcccttgg ccttttattc      3600
     taaaaaactt agtaaatcgg aacttaacta taccacctac aagaaagaat tatattcagt      3660
     gattttaagc attaggcact ttaagcagtt tctttcacac aatccattta aattgtttac      3720
     agactgcagt gggctagcaa gttttctgag aggagatcga tcacgtatta tctctaaccc      3780
     ggccattcgt tggatatccg agctagactc tttcaaattc gaggttttcc atgtaaaggg      3840
     gaaaaataat tctgttgccg actatttgtc gcgcttttct agcgcagaat cctcagcata      3900
     tgatatggaa aatcctgatg aaagtataac ctgctttaca tctcccctca aagaacttcc      3960
     ttcgcttttt gataattttc ttgaccatca acttgcagat ccgtacatta gtcagcaatt      4020
     aacggataga gaatcaaatg ttaaagccat tagaaaccta atttacttca taccctcaga      4080
     caatacgaat ttaaagaaaa ttcttgtgcc agaagtacta aaatccgcca tttttcaata      4140
     tttccatact aacacatatg gtgcacacct gggattttct aaaactctaa gccgtattcg      4200
     acatcttttt acctaccctg gcatgaacaa agacataaag tcaaaggtag ccaaatgcga      4260
     tatctgtgct cgcattaagc ctaataacaa cccctatccc actattctgc atagtactcc      4320
     tccgtctaga cccttggaaa ggctatattt agatttcgtt ggaccattac ctacttcgtc      4380
     ctcgggcaat aaatttatac tgatagcggt tgatgggttc accaaattta tatttgcaat      4440
     accatgtcga gtttccacag cagaatcggt aatacgtatt ctgaagcagc atatctttgc      4500
     gcaacatggc cttccgacgc atttaataac tgacagacag tcatgtttca gatcggcgtc      4560
     atttcggaat tttttgtttg atctcggtat aacctatatt gcgaacatca cccattaccc      4620
     gcaggctaac ctagcggaaa gatatatatc aggcctaaaa aaagccataa gagcctatca      4680
     tcatgataac caaaaaaaat gggaagaaaa ccttttctta ttcatatctg cgctcaattc      4740
     tgcacaaaat gatactacta aatccgcgcc ttctttgact tttttgggaa gggatttgca      4800
     gcatccacta atcctgaaat taaatattga acatagcctt cagcaccttt ctcaggacaa      4860
     gctgtcagat ttgttacagg atacatatgc caatttgttg aaatcctaca aggaacgaaa      4920
     acggacttat gagaaagtcc atgatccatc gaatctcccc aaggtcgggg atatagtttt      4980
     taagaggaat tttattttat ctagtaagtc aaaaaacata caagcatcat tggcccacaa      5040
     gtttgttggt ccctttgaag taataaaggt attcaatcgt gtctcgtatc ttctgcgatc      5100
     agtggacaat ccggatgtga ctgttcaggc acatctcacg cagctcaaga agcaatcttc      5160
     accttcctaa tcctacctgt aacctattta tcctcattcc ttattttttc tcggcattca      5220
     ttcagtataa tttttttttt ccattgtgta agatcaagtt ataacaattt tttgagatat      5280
     tttttttaga gatacgtggc tccattacaa aaggtattaa tttaattttc taattgttca      5340
     taaagtgaat ttgttaataa ttattttatc tttctggaaa ttttctattc agcctagcct      5400
     ttgcctaaac gtccctttgc attgtataga atctgcctaa cgccttgtct catcgacaaa      5460
     tcttcacatc gcttcgcttc gcatcagcag catcgcatat tcttcgcctt accacgtcgg      5520
     tccgtcacgt tcgcaacatg gtcgctacga aaacctatgc cacagaattt tttttttttt      5580
     cctttttttt tattcttcca tgggaatttt                                       5610
//
ID   Gypsy-10_OrIn-LTR repbase;    DNA;    INV; 537 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-537
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1582-1582 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 537 BP; 159 A; 99 C; 90 G; 189 T; 0 other;
     tataacgatt taaaataata aacaaaaaaa aggaaaggac aaggtccaat ttaaatagaa        60
     tatccccctc tacgggaaag aaaaggtgct cttctttttc tcacttctga tctgggcagc       120
     ccgagtgaac ggtccttttg ccatcgaacc tttttttctc tttgagactt ttgcgtcacc       180
     ttcttgtgac ttcacggcta cgaccttaga actacatacg gacttcgatt ggactttttt       240
     ttttggcatc tcttcagtat cgacttcggc atcaccatcg gcatcacttc ggacccacca       300
     attaaacaag gcaaggctta ggattttttt taattttttt attgtatata ttttttcagt       360
     ttatttatta tttattcaga agaataaatt gtgtaattgg aggtattagt ttatttatta       420
     agtacccgtc taagataaag caataataaa aaaagaaagg aagggtaaga ccacagagga       480
     atcaatcttt tttttaattt ttattatttg tccccctttt ggggcctagc cgctata          537
//
ID   Gypsy-10_OsLi-I repbase;    DNA;    INV; 5172 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-5172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2032-2032 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           245..4384
FT                 /product="Gypsy-10_OsLi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MVRRSNSREVGGIAGDDQKSTESRLNKVEALLEELLR
FT                 QSRSRARSHRRASSRSRSRSRSRSRSRVSRVRSRSPHRRDSQSRSHGARDN
FT                 VGNGSERDAGSINTHGSVSRTKSPGYARPGDENLIPIYDPAKEDISIENWV
FT                 RLVDELAARFSWDDRSIMRLIATRLRGHAQRWYETRMRSATTWAESKVYIV
FT                 AQFRRVMPFSRLLRDADLYEAKPGQALGDYCFKKLDLIRRLDISLSDERIV
FT                 DMIIFGIPDEAIARTIRSAKHSDPNDLYAFMSTMGKMPGKEEKRQKTERPS
FT                 GSKTAVQAKAPIACFNCGGAGHMAKECRKPKIECRLCKRLGHKREHCPQKE
FT                 VCIVKSVRNIVNMFQINVRVNGHKIESLVDTGSTCTVIHSSIIKRLAIETE
FT                 TVESIVFRGFAGRPVLINQIAPVTIKVQQVAADVNSFVIPDEYSAYDAILG
FT                 RDFLQQEHVVMLKRRNQLIFNNACDYKRPKITAAMDVCVIDTGVDMDLGNI
FT                 GKRNRKLCRALLEEFQDCVSSSTRDLGKTNTITMEIKCVTDQPIAYRPYRL
FT                 AEPEKIVVRDLVKDLLDNGIIRESDSPYASPITLVKKKTGDYRMCVDYRKL
FT                 NAITVKDKYPLPLIDDQIDRLGGHRYFTGLDLASGYYQVPVAEDSIAKTAF
FT                 VTPEGHYEFLRMPFGLTNAPAVFQRLMRKVLQTLEKTTALPYIDDIIIPSK
FT                 TIEEGMDGLREVLEALRTHGLTLRLEKCSFFKESIEYLGREISEQGVRPGQ
FT                 RKINAVQEMPAPENVKQVRQFLGLASYFRKFIENFAALVEPLTRLTRKTAM
FT                 GAEQKHAFSQVKERLVNRPVLRIFDPSLPTELHTDASSIGVGAMLLQKQEN
FT                 GNMAVIAYFSKQTTVDQRCYHSYELETMAVVFALRHFRVYLLGLEFKVVTD
FT                 CNALRTTFSKKDLLPRIGRWWLEVQEFTFEIVYRPGTRMAHVDALSRNPQP
FT                 TVLEIAYVDVTEAEWIVAAQMQDEQLARIRMILAEQRESPETQQYFKEYVL
FT                 KKEKLYRRLPGNKTAWVVPQAARLQICRLCHDDAGHSSAEKTLQRMQRNYW
FT                 FAGMRRFVDKYVKACLSCAYYKHTAGKKQGKLNPIEKVPVPFHTVHIDHVG
FT                 PFETSRKGNKYLLVMVDAFTKFTIIEPVKDQKTRHTEKVLLNVMYLFGVPT
FT                 RIISDRGTSFTSRRFTLLCQTYGIKHVLNAVATPRANGQCERYNKTIVDAL
FT                 ATSAVGQDARDWDTQVKRVQSAINTMHNKSIGTTPMKALIGCETKTVAEGP
FT                 ILSAVREEIDRLDLTALREDISRHISEEQRAQKERYDRTRKEARRYTKDEL
FT                 VLVQVTSEPATGGSRKLLPKFKGPFRIRAVLPNDRYEVEDLREGSKRLRTV
FT                 VAADKIKPWISIQGDDQ"
XX
SQ   Sequence 5172 BP; 1516 A; 1147 C; 1421 G; 1088 T; 0 other;
     tatcagaagt gggataaccg tactggaatt acgtgtgtga ttaaggtgtg taaatcgagt        60
     ccacgttgga acgattatac tcgtgcataa cgtgcaaagt gataagtgcc gtgtgcagac       120
     attcgagttg ttggattata aactgtgcca tagtgtcagc attactgtaa ataaactgtg       180
     tgaacaattg tattattaag tagattataa gagtcatttt caacggtcgt aagtgaagtg       240
     caatatggtt cgtagatcaa atagccgcga ggttggggga attgctggtg atgaccagaa       300
     gtccaccgaa tctcggctca acaaagtgga agctttattg gaggaacttt tacgccaatc       360
     gcggtcccgt gcgcggtctc atcggcgtgc aagctcacgt tcacgttcgc gttctcgttc       420
     acgctcgcgt tctcgtgtat cacgcgtacg gtcacgtagt ccgcacagac gcgattcaca       480
     atcgcgatcg cacggggcgc gtgataatgt aggtaacggt tcggaacggg atgcagggag       540
     tataaacacc catggctccg tgtcgcgaac gaaatcaccc ggctacgcgc gtcctggtga       600
     tgagaattta ataccgatat atgaccccgc aaaggaagac atctcgatcg agaactgggt       660
     ccgcctcgtg gatgagctag cggccagatt ttcgtgggac gaccggagca tcatgcgtct       720
     catcgccacc aggttacgag ggcacgcgca acgttggtac gagacccgga tgcgcagcgc       780
     aacaacatgg gcggaatcaa aagtgtatat agttgcgcag tttcgccgtg tgatgccatt       840
     ttcacggtta ttacgcgacg cagacctata tgaggcgaag ccgggtcaag ctttaggcga       900
     ctattgtttt aaaaaactgg acctcatcag acgactggac attagtttgt ctgatgagcg       960
     aatcgtagat atgattattt ttggaattcc tgacgaggcc atcgccagga ctatcaggtc      1020
     ggctaaacac agcgatccca acgacctgta cgcattcatg tcgacgatgg ggaaaatgcc      1080
     gggcaaggag gagaaacggc agaaaacgga gcgaccatct gggtcgaaga cagcggtaca      1140
     agcaaaggcg ccgatcgcgt gcttcaactg cggaggagca ggccacatgg cgaaagagtg      1200
     cagaaagcca aaaatagaat gcagactgtg caagcggctt ggacataaac gggagcactg      1260
     cccacagaaa gaggtgtgta tagtaaaaag tgtgcgaaat atcgttaaca tgtttcagat      1320
     caatgtccgc gtcaatggtc ataaaataga gagtttggtg gacactggaa gtacctgtac      1380
     agtgatccat tcctctatta ttaaacgatt agcaatcgaa accgagacgg tagagagcat      1440
     tgtatttcgg ggattcgccg gacgaccggt actaataaat cagatcgcgc cggtgacaat      1500
     taaagtccag caggtagcag cggatgtaaa ctccttcgtg atcccagacg aatattcagc      1560
     atacgacgcg atcttaggta gagatttcct tcagcaggag cacgttgtta tgctgaagcg      1620
     acggaaccag ctcatattta ataacgcgtg cgattacaaa aggccgaaga ttaccgctgc      1680
     catggacgta tgcgttatcg acacgggcgt tgacatggat ttaggcaaca tcgggaagag      1740
     aaaccgaaaa ctgtgcaggg cattgctcga agaatttcaa gattgcgtat catcgtcaac      1800
     gcgagacctc ggtaaaacaa acaccattac gatggagatc aagtgcgtca cggatcaacc      1860
     gatcgcgtat cgcccgtacc gtctcgcgga gccggaaaag atcgtcgtcc gcgatctcgt      1920
     aaaagactta ctagataacg ggataattcg ggagtctgat tctccgtacg cgagtccgat      1980
     cacgctcgtc aagaagaaga ccggagacta taggatgtgc gtggactatc ggaaattaaa      2040
     cgcaataact gtcaaggata aatatccgtt gccactgatc gacgaccaaa tcgatagact      2100
     cgggggacac cgatatttta ccggcctcga tttagcatcg ggatactatc aagttccagt      2160
     cgcggaggac tccattgcga aaacggcgtt cgtcactccg gaggggcatt acgaattttt      2220
     aagaatgcct tttggattga cgaatgcgcc agctgtcttc caaaggttga tgcgaaaagt      2280
     tcttcagacc ctggagaaga caacggccct cccatacata gacgacataa taataccgtc      2340
     gaaaacaata gaagaaggca tggacggtct acgggaagtt ttggaggccc ttcgaacgca      2400
     cggtctaacg cttaggttag aaaagtgttc ctttttcaaa gaaagcatag aatacctggg      2460
     ccgtgagatc agcgaacaag gggtaagacc aggccaacga aaaataaatg ccgttcagga      2520
     aatgccagca ccagaaaatg tgaagcaggt acgccaattc ctgggactcg caagttattt      2580
     caggaagttc atcgaaaact tcgcagccct cgtagagcca ttaacgcgcc tcacgcggaa      2640
     gacggcaatg ggggctgaac aaaagcacgc cttctctcag gtaaaggaaa ggctggtgaa      2700
     tcgaccggta ttacgcatct tcgacccgag tctacccacc gaactgcata cggatgcgag      2760
     ttcgatcggc gttggtgcaa tgctattgca aaaacaggag aacggaaata tggcggtgat      2820
     cgcatatttc agcaaacaaa cgacggtgga ccagaggtgc taccattcgt acgagttaga      2880
     gacaatggct gttgtgttcg cgttacgaca tttcagagtc tacctgctgg ggctggaatt      2940
     caaagtggtg accgattgca acgcactgag gacaaccttt tcaaagaagg atttattacc      3000
     gcgcatcggt cgatggtggt tagaagtcca ggagttcacc ttcgaaatcg tgtatcggcc      3060
     aggtacgcga atggcgcacg tggatgccct gagccggaac cctcaaccga ccgttctcga      3120
     gatcgcttat gtggatgtca cggaggccga gtggattgtt gcagcccaga tgcaggacga      3180
     gcagttggcc cgcatcagaa tgatattagc cgaacagagg gaatcgccgg aaacgcagca      3240
     gtatttcaag gaatacgtat tgaagaagga gaaattgtat cgccgtttac cgggtaacaa      3300
     gacggcttgg gttgtaccac aggcagcaag attacagatc tgtaggttgt gccacgacga      3360
     cgctggacat tcgagtgcgg agaagacgct acagaggatg cagcgaaatt attggttcgc      3420
     tggtatgcga cggtttgtag ataaatatgt caaggcatgt ttaagctgcg catattataa      3480
     gcataccgca gggaagaaac agggtaagct gaatcccata gagaaggtac cagttccatt      3540
     ccatacggta cacatcgacc acgtgggacc gttcgagaca agtcgaaaag ggaataagta      3600
     cctgctcgtg atggtagacg cattcacgaa gtttacaatc attgaaccgg taaaggacca      3660
     gaagacccgt cacaccgaaa aggtactcct caacgttatg tatctgttcg gtgtgccgac      3720
     caggataatt agtgaccgcg ggaccagttt tacgtcgcga agattcacgt tgctgtgtca      3780
     gacgtacggt atcaaacacg tattgaatgc agtggccact ccaagggcga acggacagtg      3840
     tgagcgctac aataagacca tcgtggacgc tctggccact agtgcagtgg gtcaagacgc      3900
     acgagactgg gacacgcagg taaagagggt gcaaagtgcc ataaacacca tgcacaataa      3960
     gagcatcggt acgacaccga tgaaggcact gatcggctgc gaaacgaaga cggtagccga      4020
     gggaccgata ttaagcgctg tacgcgagga aatagaccga ttggacttga ccgcgttaag      4080
     agaggacatc agccggcaca tttctgagga acagagagcg cagaaggaac ggtacgaccg      4140
     tacgcggaag gaagcccgca ggtataccaa ggacgagcta gtactcgtac aggtgaccag      4200
     cgagcccgcg acggggggta gtcggaaatt gctaccaaaa tttaaaggac catttcgtat      4260
     tcgggcggtg ttaccgaatg atcgttacga agtggaagat ttaagggaag ggtcaaagcg      4320
     actaagaaca gtcgttgcgg ccgacaagat caagccgtgg atctctatac aaggagatga      4380
     tcaataatat tggtctcacg aatggggaaa ggaacggtag ttaatttcca tgtagtatat      4440
     ccttaattat atatttattt ccaggggaat ttggtacgaa acgataacca ataaaaacga      4500
     ttatagctaa tttaatacta attgattatg tccacagaaa ataaaggaaa agccgagagc      4560
     ataaggctta ggctggcaat agaaagggac gttcgcacga cgaccaggcg aagtccataa      4620
     gagggaggca acggcctcca catcgaataa cgatgataat ggtcaaccac tgtggtccca      4680
     acgggggctg cacagtaaaa gaaggacgca acgagcgtcg tgacacgagg tgtcacagct      4740
     gctgaccatg gggtacagag gtaccctgga ctacgggatc cgatagatgc aacggcattc      4800
     tatcgaagtt ggcattaaac cagacggaca caaagagtgt ctcaggcagg tagatgtcaa      4860
     gctaggggaa ttaacatcaa accagacgga cacaacgtgt gtctcaggca gggcgatgtt      4920
     aaactagcaa agttaacacc aaaccagacg ggcacaacgt gtgtcttagg cagggcggtg      4980
     acggacgagt agggcaagat gcctctcgat tgacaaggga tacaacggta tccgcagctg      5040
     attgcaggca atacgacggt attgtgctgc gacagacttc atcactcgtc cgagcttaca      5100
     ggaacaggaa taatcacgcc caacaatctc gatgtaaagt ctgaggacag accccacgtc      5160
     agtatggccg aa                                                          5172
//
ID   Gypsy-10_OsLi-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-321
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2029-2029 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 321 BP; 84 A; 75 C; 68 G; 94 T; 0 other;
     tgttagaaat ttaaaaaata caactgttag agcggaccgt gcgcacctcg gcaacggtat        60
     ttcacggtta gtacgtcacg ggttttccct gtaaggacaa agcgtcataa actcggtagg       120
     aaaagggcca tggtgacgta ggcgtcctca cggctaacgt tttgtctaca agtcactctt       180
     gtcttgatcg tggacgtgtc cacatcgctg attaatatta aagtacaagc cttattacga       240
     actccgagtt ccagtgttgt tttaatacgc ccacattgtg caatacgatc ctatccctcg       300
     cattctcgta attttcttac a                                                 321
//
ID   Gypsy-10_PBa-I repbase;    DNA;    INV; 4954 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4954
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 689-689 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..1032
FT                 /product="Gypsy-10_PBa-I_1p"
FT                 /translation="MKISWIYGLSKVQLATQLATHGLDNIGSTDTLRHRLR
FT                 QFVIQNPELFVGQDTADMPTEEKATPGPPEPAPARVEPMPLDPTAILDRIR
FT                 KWGLCFDGKDPFAFLERLEELRRSYRYADELFLLGLPEMLRGNSLLWYRNN
FT                 YEDWTTWDAFCTAFRLKYLPPDYQDQLRQDAQARRQKPGEPFDQYATDLLT
FT                 MMRRAGGYSPQEKVRLLYNNLNSSYQLYIRSTEATSIAGLSARAAEHERIL
FT                 RRQKEEQPPTRSPLVAAAAYSREECCWRCKQRGHTRLDCKKPPRKFCSRCG
FT                 KDGVFTRDCHHPPSGNGTRAGEPAAAARPDRTP"
FT   CDS           1284..3755
FT                 /product="Gypsy-10_PBa-I_2p"
FT                 /translation="MPNLSGPILIGIDLWAKLGVALPAPPITKTRDQPVVG
FT                 EISAGLTPRTADEDQQLREFLHRELAAFETIRGPTDRIEHRIRLTTDQPIK
FT                 QRYRPRNPAMQAVIDQEVRKMEEAGVIEPSQSAWSSPVVLVRKKDGTYRFC
FT                 IDFRKLNDVTQKDAYPLPHIAATLDKLRGAKYLTTLDLKNGYWQVPLAPES
FT                 RPVTAFTVPGRGLMQFRTMPFGLHSAPATFQRLLDSILGPELEPNVLVYLD
FT                 DIIVASPTFEKHLEHLAEVFRRLRAAKLRLNADKCHFCRDSLRYLGHLVDR
FT                 HGIRTDPAKVSAIVNWPPPTNLRQVRQFLGMASWYRRFIADFSAVTAPLTR
FT                 LTRKNARWTWTAVENKAFQRLKDALTSAPVLACPNFELPFTLQTDASTHGL
FT                 GVVLTQRLAEGERVIAYASRTLNPAERNYSATELECLAVVWGIRRMRDYLE
FT                 GYRFTVLTDHQSLRWLQRLEAPSGRLARWLFELQQHDFEIEYRRGTQNLVA
FT                 DALSRQPEVATAQQTPSCPWYHRISREVQTRPADRPDYQMRDGLLYRHILH
FT                 DLDFREMPADEQWKRCVPTPERAALLRRWHDDPASGHLGTAKTMARVAQQY
FT                 YWPGMLREIARYVRTCATCMAHKVSQQRPAGTLHTTPVTAPWQQVAIDLVG
FT                 PLPRSNRGHTWILTMQDRFTKWLEVTPLRKATAANVARAFTDQVVYRHGCP
FT                 QRIITDNGTQLKSKQLGKLLTAFGIQHRTAPPYTPQCNPVERANRTLKTMI
FT                 AQYVGRSQKTWDEHITALQYAFNTAWSEATGHTPAYLNHGRELARPHPEDR
FT                 RRPGNTRLQKRRTDGCKRPTSS"
XX
SQ   Sequence 4954 BP; 1115 A; 1738 C; 1381 G; 713 T; 7 other;
     catggcgccc gaacagggac ctgcccagta gagactccgg cttgcgtgcg cactccgatg        60
     aaaatctctt ggatatacgg tctttcgaaa gtccagctcg ccactcaact agccacgcac       120
     ggcctcgaca atatcggtag taccgacacg ttacgacatc gattgcgcca attcgtaatc       180
     caaaacccgg agctgttcgt cggacaagac accgccgaca tgccaaccga ggaaaaagcg       240
     acgccgggac cgcccgagcc ggcccctgcc cgggtcgagc caatgccact cgaccccacc       300
     gcaatcctag accgaatccg aaagtggggc ctctgcttcg atggcaaaga cccgttcgca       360
     ttcctcgaac gtctagagga gctgaggcga tcctaccgct acgccgacga attgttcctg       420
     ctagggctac cagagatgct gcgcggaaat tcattgttgt ggtatcgcaa caattacgag       480
     gactggacca cctgggacgc cttctgcacc gccttccgac tgaagtacct cccacccgac       540
     taccaagacc aactacggca agatgctcag gcccgaaggc aaaaaccagg ggaacccttt       600
     gaccagtacg ccacggacct gctgaccatg atgaggcgcg ctgggggcta ttcgccacaa       660
     gagaaagtcc gcctgctata caacaactta aactccagtt accagctata catccgatcg       720
     acagaagcca ccagcatcgc ggggttaagc gccagggcag ccgaacacga aaggatactc       780
     cgtcgacaaa aggaagaaca gcctccgacc cggagcccgc tggtcgcggc cgccgcctac       840
     agcagagagg agtgctgttg gcggtgcaag cagcgaggcc acacacgcct cgattgtaag       900
     aagccaccgc gcaagttctg ctctcgctgt ggcaaggacg gcgtgttcac ccgagactgc       960
     caccatccac cgtcgggaaa cggcacacgg gccggggaac cagcggccgc cgcccgtccc      1020
     gacagaacgc cataaagttc acgcctaggc cgcatctgaa gatccagcta ctcggtcggc      1080
     atctgtgggc cctgctcgac tccggctccg aggtctcgtt cgtgagtccc gccacggcca      1140
     aacgagcccg gtactgcggc cacccccctc ggggggtaac ccaacagatc aacttggccg      1200
     acggcaccac ggtccccatc acccacacgg tggacctacc gatcaccatt atcgaccgta      1260
     ccgtgaccca cacgttccaa gtcatgccga acctcagcgg gccgatcctc atcggcattg      1320
     atctttgggc taagctcggg gtcgccctcc ccgcaccccc gatcaccaag acccgcgacc      1380
     aacccgtggt aggggagatt tcggccgggc taacgccacg caccgcggac gaagaccagc      1440
     agctacgaga atttctacac cgggagctag ccgccttcga gaccatacgc ggcccgaccg      1500
     accgtatcga gcatcgtatc cgcctaacga ccgaccaacc aattaaacag cggtaccgac      1560
     cgcgtaatcc agccatgcag gccgtaatag accaggaagt gcgcaagatg gaagaggccg      1620
     gcgtaatcga gccgtctcaa agcgcctgga gctccccggt ggtgctcgta agaaagaagg      1680
     acggcacgta tcgtttctgc atcgacttcc ggaaactgaa cgacgtcacg caaaaggacg      1740
     cctatccctt gccgcatatt gcggctacgc tcgataagct gcgcggtgcc aaatatctca      1800
     ccacgttgga tcttaaaaac gggtattggc aagtcccgct ggcacccgaa agccgaccag      1860
     tcaccgcgtt caccgtgccg gggaggggac tcatgcagtt ccgaaccatg ccgttcggac      1920
     tacattcggc tcccgccacg ttccaacgcc tcctggactc tatcctgggg ccagagctcg      1980
     agcccaacgt cctcgtgtat ctggacgaca tcatcgtggc cagcccaact tttgagaaac      2040
     acctagaaca cctggccgag gttttccggc gcctgcgagc cgccaaactc cgactcaacg      2100
     ccgacaagtg ccacttctgc cgggacagcc tccgctactt gggtcacctt gttgaccgcc      2160
     acggaatccg caccgacccg gccaaggtga gcgccatcgt caattggcca ccgcccacca      2220
     acctccggca agttcgtcag ttcctgggca tggcgtcgtg gtatcgacgc ttcatcgcgg      2280
     acttctccgc cgtgaccgca cccctcacac gcctgacccg caaaaacgcc cgctggacct      2340
     ggaccgccgt cgagaacaag gccttccaac gcctcaagga cgctctaacg tccgctccgg      2400
     tactcgcgtg tcccaatttc gagttgccgt tcaccctgca gaccgacgcc agcacgcacg      2460
     ggttaggcgt tgtcctaacg caacgactgg ccgaaggaga acgggtcatt gcgtacgcca      2520
     gccgcacgtt gaaccccgcc gagcggaact acagcgccac tgagctggaa tgcctcgctg      2580
     tagtctgggg gattcgccgg atgcgggact acttggaggg atatcggttc accgtgctca      2640
     ccgatcacca gtccctccgg tggctccaac gcctggaagc cccgtcgggt cgattggccc      2700
     gttggctgtt cgaattacaa cagcacgatt ttgaaatcga ataccgtcga ggcacccaaa      2760
     atctagtggc cgatgcgctc tcccgtcaac ccgaggtcgc cacggcacaa cagacgccgt      2820
     cctgcccgtg gtatcaccga atcagccgag aagtccagac ccgacccgcc gaccggcccg      2880
     actaccagat gcgggatgga ctcctgtacc ggcacatcct ccacgacctg gacttccggg      2940
     agatgcccgc cgacgagcaa tggaagcgat gtgtgccaac acccgagcgt gccgccctgc      3000
     tcagacgatg gcacgacgac cccgcatccg gacacttggg gaccgccaaa actatggctc      3060
     gcgtcgccca gcagtactac tggccgggga tgctccggga aatcgcacgg tacgtccgca      3120
     cctgcgcaac ctgtatggcc cacaaggtgt cacaacagcg acccgccggg accctccaca      3180
     cgaccccggt cactgcgccg tggcagcagg tcgccatcga cctggtcgga ccactacccc      3240
     gctccaaccg tggacacacg tggatcctca cgatgcagga ccgattcacg aagtggctcg      3300
     aagtcacgcc attgcggaag gccactgcag caaatgtcgc cagggccttc accgatcagg      3360
     tcgtgtaccg acatgggtgc ccacagcgga taataacgga caatgggacg caattgaagt      3420
     ccaaacagct agggaagctg ctgaccgcct tcggcatcca acatcgcacc gcgccgccat      3480
     acacgccgca gtgtaatccg gtcgagcggg ccaaccggac tctcaagacc atgatcgctc      3540
     aatacgtggg ccggagccag aagacgtggg atgagcacat caccgccctc caatatgcct      3600
     tcaacacggc ctggagcgag gccackgggc acacccctgc ctacctcaac catggcaggg      3660
     agctcgccmg acctcacccg gaggaccgac ggcgcccggg aaacacccgg ctccagaaac      3720
     gacgcaccga cggttgcaag aggcctacga gctcgtgagg gtgaacttgg ctcgtgcctt      3780
     ccaacatcag gaacggcatt ataacctgcg tcggcgggaa tggaagccaa aagtcggaga      3840
     attggtgtgg aagagaaacc acgtcctgtc cgacaaggcc aaggcgttca acgccaagct      3900
     ggctccaaaa ttcgtggggc ccctggaagt ccggaggatc atctcgcctg tcatcgtcga      3960
     cctacgggac gcccgcggac gctggcaccg acakgtccat gtacaggacc tgaaggcaca      4020
     cccggcccca aaaccgcaat ccgccaagta atgaccagcc ccgctgcgcc agcgcaacac      4080
     cgaccggtcg gtaaagtcac gattaccgac cgtgagtgtc cgcacacccg aaacacgcgg      4140
     accacgaccg agggcgccac cggcctaaca acgcgccgaa acaagcacac gaaaacaacg      4200
     cgcgccgcat tccggacatt ccacgcacgc gtataaaagg ccacgcaccg gatagccaaa      4260
     caatcagtca gtccgcagca gcmacgatgc cgacagacgc tgagaggaga cagctcgagg      4320
     agctgttcgg gcactggtcc gacgacgacg acgcgacagc ctcccggacc cgccaagagt      4380
     aacggccgcc agccaccacg cggcgcaccg gagcgagcgc ccgaccaccc cggcgactac      4440
     ccccgcgggt ggggaccgtg atccaacggt ccgacgccga tcacaggagg aaggccctcc      4500
     tcctgttgac cccgccgccg ccgccaccgg accgacggcg actacagggg cggagaccac      4560
     cgccgaggcc caggaccacg cggcccgctc cggccgcmtg cgcagcagcc cgggcaacac      4620
     ctgcgccgaa cgcaccgagg cgcgttagcg tcgagcggca acccggacca aggccgacgc      4680
     tgccgcgcac ccaagcgccg aaagcmccgc cgccaacaac gagccgaccg acaacccggc      4740
     cgctccatgc ggtgggaccg cgcgcccccg ggccagtgga ggtgagggtc gccgcaggaa      4800
     cgatgctcca cgtgccgcac cgcgcggtac acacctcccg gcggtaccga cggtggaccc      4860
     cggagggtca gtggaccctg cggttcaaca ccgacgggac cctccggagc agccgcctac      4920
     gccgcgccam cgacaccgcc taaagggggg gtga                                  4954
//
ID   Gypsy-10_PBa-LTR repbase;    DNA;    INV; 1017 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1017
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 690-690 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1017 BP; 187 A; 357 C; 245 G; 228 T; 0 other;
     tgtaacggca gggccgttac gagcacacat acatatatac atatacatac atatacatat        60
     acataaatat atacaaacgc tgggctcact atcctgcact acccatcccg cttgcacgta       120
     caccactcgc gctatcgcat tcgcttgcct gtagggcgca cgcgccgtct cgctcacgct       180
     atctcgctcg cggtgccccc acgcgatacc gactccccgc caccggaccg acggcgcgca       240
     gtggggaacg ccggccgggt atataagccc ggccggccga gacatcggga ccagatccca       300
     tcctgcgatc cgactcccga taccgaccta accagtacct actacctctc ggggccaagg       360
     tttcgcttgg ctctgccggg tttcaccggc tttctctacc tacgggctga ggtttcactc       420
     agctctgtcg ggtttcgccg actcctgtca ccgctccacg ggctgaggtt tcactcagct       480
     ctgtcgggtt tcgccgactc ctgtcaccgc tccacgggct gaggtttcac tcagctctgt       540
     cgggtttcgc cgactcctgt caccgctcct cgggctgagg tttcgctcag ctccaccggg       600
     tttcgccggt ttccgttgcg aaggcagggc tcgacgtggc actcggccct gcccgcaata       660
     cctaaccgtc ccgcctgaca ttagctcgta agtgcatgcg atagagatta aggccgctag       720
     ttataagtca gtaatcctaa gatccctagt ggtaaccgcg ccgtgtaaat agaccgttgt       780
     cgaccgcacg ccgcacccgt cctgcgcatc tcatcgcctt acgccaaccg gttgcgtctc       840
     cgctttgcta ccagcgacac tgcgacatca cccggctctg cactactctg tatctacctt       900
     tctaccaata aacgatcttt tcgccgccac ttgtgttcgc gtacgcttga gtctcccctc       960
     ctctcgaacc cggacaccga cgagccgatc cgagcgtcga gcgaggtgac cgcgtca         1017
//
ID   Gypsy-10_RP-I repbase;    DNA;    INV; 4127 BP.
XX
AC   ACPB02036805;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_RP_;
KW   Gypsy-10_RP-LTR; Gypsy-10_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4127
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02036805; Positions  105611  109737.
XX
CC   Positions [3154-3669] - Integrase core
CC   'TGTCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..973
FT                 /product="Gypsy-10_RP-I_2p"
FT                 /translation="MVGKRQRARRALSSSPNALGETHDAISAAVATPPWSQ
FT                 HAVPAAQVYNPRALTPPFTAEHVETWLEQFENAMNLGAVQDDQKKYAYLTA
FT                 LLPTDVMAQAAGAIRTTTGGKYLAMRSYLITRYGVTSERRLDRLFAEGELG
FT                 DRRPTQLLDDLQRLASGTEVGATVIRRLWLQRLPTNLRTIVVAHSAPLEEL
FT                 AAIADRVLTAQQPSYAAPTNMPPVMAPVDSVPETSNLEEQGATALYGLAQA
FT                 EVADARTYIRQRKNSANASRITKLEVQIKQLSDQLHTLKARETLTCYYHTR
FT                 FGARAQKCKPPCQFRSENLSANR"
FT   CDS           937..4128
FT                 /product="Gypsy-10_RP-I_1p"
FT                 /translation="MSIPLGKPFGQSLEAASGLASISSRLYITDRVSGTSF
FT                 LVDTGAEVSAIPPNDNNTTHNTPTTRLIAANGTSIPVFGQKTLRLNFGNDL
FT                 IACWRFYIAGVSRPILGADILRAQGWIVDLHQQCLLSSRPQTHHGPGIIAA
FT                 SIETSTIPPKRPTNAYLSMLDRFPRVVGLLPPEPQPQLKIAHTIQTSGPPA
FT                 FARARRLPPDKLEAAKAEFDRMCKEGTCRPSNSHWASPLHMVRKKSGEWRP
FT                 CGDYRQLNALTIPDRYPLPHIQDFTSSLAGKTIFSTIDLQKAYNQIPVATQ
FT                 DIPKTAIITPFGLFEFPCMTFCLRNAAQTFQRFMHEVTRDLPACYVYIDDI
FT                 LVASTTEDEHKQHLHELLQRLDNYGLTINPQKCHFGLPEVQFLGHLVNDQG
FT                 IRPLPAKCTTISSFPKPRTVEQLRRFLGLFNFYRRFIPSAAHIQAPLLRFL
FT                 KNSRKRDTRPIDWDSDTEAAFNTCKRAIAETTQLAHPEKNPNLELSVDASD
FT                 VAIGAALHQLTAQGRQPLAFLSRRLSDTERRYSAYDRELLAAYAAVRQFRH
FT                 WLEGRQFVIRTDHKPLTYAFRQPPDKASPRQVRQLDFIAQFTTDVRHIKGE
FT                 ANTVADTLSRIDEVSAFEGLNYTQVAQEQAADSQLQSYLQDTPDTPHSTAM
FT                 HLSSIPIGNTGQTLVCDTSTGRLRPYLPFQFRESVIRRIHGLAHIGPKATT
FT                 RTVAQRFVWPKMKTDCREWARACIECQKNKVARHAKAPLVPYVPPEERFAH
FT                 VHMDIVGPLAVSRGYTYCLTCVDRFSRWPEAIPLRSVTAAEVAAAFYQHWI
FT                 ARFGCPATITTDQGTQFTSRLYQELAALTGAQIKHTSAYHPQANGIIERWH
FT                 RTLKSALRSHDSTNWAVHLPTVLLGLRAAVREDTGLSPAEYTYGTTLRLPG
FT                 DFFADQPTIMPQTEFVAQLKQTISQLRPVPAEWHATQRPFVHKALASCSHV
FT                 FLRKEGHRRALTPPYEGPFRVIARDHKTITLEKQGKQKTVPIDRVKPAFLT
FT                 YITERSPQQATQQDQQRPAPQEAGNLQQSRSQTGYRSRAGRLILPPHRYGQ
FT                 PTTEGTG"
XX
SQ   Sequence 4127 BP; 1161 A; 1228 C; 924 G; 814 T; 0 other;
     ctggtgaccc cgccttggac aaccggaaat ggtgggcaaa agacagagag ccaggagggc        60
     gctctctagc tcaccaaacg cactaggtga gacgcatgat gccatctctg ctgccgtagc       120
     aacaccacca tggtcacaac acgctgtgcc ggcagcgcag gtctacaatc ctcgcgctct       180
     aacaccgcct ttcacggctg aacatgtaga aacgtggctg gagcagtttg aaaatgctat       240
     gaacctcgga gcggtgcaag acgatcagaa gaaatatgca tatctaacgg cacttctacc       300
     cacggacgta atggctcagg cagcaggcgc tatacgcaca accacagggg gtaagtatct       360
     ggccatgcgc agttatttaa ttactagata tggagtaacg agcgaacggc gcctcgatag       420
     attattcgcc gaaggcgaat taggtgatcg acgccccacg caactgctgg acgaccttca       480
     gcgactagct tctgggacgg aagtgggggc aaccgtcata cgacggttgt ggctccaaag       540
     actcccaact aacctacgga ctatagtggt cgcgcattcc gcgcctttag aagagttagc       600
     ggccattgct gaccgtgttt taaccgccca acaacccagc tatgccgccc ccacaaacat       660
     gccaccagta atggcgccag tcgatagcgt cccagaaaca tcgaacctcg aagagcaagg       720
     tgcgaccgca ctgtacgggc ttgctcaagc ggaagtcgca gacgctcgca catacatacg       780
     ccaacgaaag aacagtgcta atgcctcaag gataaccaag ctagaagtgc aaataaaaca       840
     gctctctgat cagttgcaca cccttaaagc gcgagaaaca ctcacctgct actaccacac       900
     tcgttttgga gctcgtgctc aaaaatgtaa acccccatgt caattccgct cggaaaacct       960
     ttcggccaat cgctagaggc ggcaagcggt ttggcctcaa tatctagccg cctctatatc      1020
     acagatagag tctcaggaac atccttttta gtagatacag gcgcagaagt ttctgcaata      1080
     cctccaaacg ataacaatac aactcacaat acccctacta cgcgtttgat agcagctaac      1140
     ggcacctcca taccggtctt tgggcaaaaa acactacgcc tcaatttcgg aaatgaccta      1200
     atagcatgct ggcgtttcta tatcgcggga gtatctcgcc ccatactcgg agcggatatt      1260
     ctgcgggctc agggatggat agttgacctg caccaacaat gcctactttc atcccgaccg      1320
     caaacgcacc acgggcctgg tattattgca gccagcattg agacgtccac tataccaccc      1380
     aagcggccta cgaacgctta tttatccatg ctagaccgct tccctcgagt cgtcgggcta      1440
     ttgccaccag agccacagcc acaactaaaa attgcacaca ccattcaaac ctctggaccg      1500
     ccagcattcg caagagcgcg acgccttccc ccagacaaac tggaagccgc caaagcggaa      1560
     tttgaccgca tgtgcaagga aggcacctgt cgcccctcta atagccactg ggctagcccc      1620
     ttgcacatgg taaggaagaa atcgggagag tggcgcccct gcggcgacta ccgccaacta      1680
     aacgcactga ctataccaga ccgataccca ttgccacaca tccaggactt cacaagctct      1740
     cttgcgggta aaacgatatt ttctacaata gacttacaga aagcctacaa ccaaattccg      1800
     gtagcaaccc aggacatacc caaaaccgct attatcaccc cattcgggct ttttgaattc      1860
     ccgtgcatga ccttttgcct ccgcaatgcg gcacaaacat tccaaagatt catgcacgag      1920
     gtaacacgag atctccccgc ctgttacgtc tacatcgacg acattttagt tgcttccacg      1980
     acagaggacg aacataaaca acacctacac gaactacttc aacgactgga caactatggg      2040
     ttgacaataa accctcagaa atgccatttc ggactccctg aggtgcaatt tctagggcat      2100
     ttggtaaatg accagggaat acgccccctt ccagccaaat gcaccacaat ttcctcattc      2160
     ccaaaacccc gtacagtaga acaacttagg cgatttctgg gattattcaa tttttaccgt      2220
     aggttcatcc caagtgcagc acacattcaa gccccacttc tacgtttcct aaagaatagt      2280
     cgcaaacgcg atactaggcc aatcgactgg gactctgaca cagaagccgc tttcaacacg      2340
     tgcaaacggg cgatagccga aactacccaa ctagcacacc cggaaaagaa ccctaatctc      2400
     gagctatctg tagatgcttc agacgtagca atcggcgctg cgctacatca gctcaccgca      2460
     caaggcagac aacccttagc cttcctttcg agacgcctta gtgatacaga acgaaggtac      2520
     agcgcatatg atagggaact cctggctgca tatgccgcgg ttcgacaatt ccgccattgg      2580
     ttagaagggc gccagtttgt aatacgtaca gatcataaac ctttaacgta cgccttccgg      2640
     cagccaccgg acaaagcttc ccctaggcaa gtaagacagc ttgatttcat cgcgcagttt      2700
     acaaccgacg tgcgccatat caaaggcgag gctaatacag tagcagatac tctctctaga      2760
     attgatgagg ttagcgcatt cgaaggacta aattacaccc aggttgctca agaacaagca      2820
     gcagactcac aactacagtc atacttgcaa gacacgccgg acaccccaca tagtaccgcc      2880
     atgcacctgt catccatccc cattggaaat accggccaaa cactcgtttg cgacacttca      2940
     accggacgct tgcgccccta tttaccattc caatttagag agtcagtaat acggcggatt      3000
     cacggcctgg cacacatcgg tcccaaggcc acgacacgga ctgtcgcgca gcgctttgtc      3060
     tggccgaaaa tgaagacaga ttgcagggaa tgggcccgcg cttgcattga atgccaaaaa      3120
     aataaagtcg cgcggcacgc caaagcccct ttggtaccct acgttccacc agaagaacgt      3180
     ttcgcgcacg ttcatatgga cattgtaggc cccctagcag tgtcgcgagg ctacacttat      3240
     tgcctcacct gcgtggatag gttttcgcga tggccagagg cgatccctct gcgcagcgtc      3300
     accgccgcag aagttgccgc agctttttac cagcattgga tcgcaaggtt cggttgccca      3360
     gcaaccatca ccacagatca agggacacag tttacgtcgc gactatacca ggagttagca      3420
     gcattaacag gagcacaaat taagcacact tcagcatatc atccgcaagc caatggcatt      3480
     atagaacgct ggcaccgtac gttaaaatca gcactacgct cacacgactc tacaaattgg      3540
     gcagtgcact tgcccactgt gttgctgggt ctccgagccg ctgtcagaga ggacactgga      3600
     ctatcaccgg cggagtacac ttacggcacc acgctgcgac tgccaggaga ttttttcgca      3660
     gaccaaccaa ccataatgcc acaaacggaa ttcgtcgcac aacttaagca gacaataagt      3720
     cagttgcgcc cagtaccagc tgagtggcac gcaacacaac ggccatttgt acataaggct      3780
     ttggcctcat gctcgcacgt ctttctacgc aaagaaggcc accgccgtgc acttacacca      3840
     ccatatgaag gcccatttcg agtgattgca agagaccaca agaccatcac tctggaaaaa      3900
     cagggaaagc aaaaaacagt gcctatagac cgcgtcaagc cggcgtttct gacctacatc      3960
     acagagcgaa gcccacaaca agccacacaa caggaccagc agcgacccgc gccacaagaa      4020
     gcaggaaacc tacagcaatc gcgcagccaa acaggatatc ggtcgcgggc tggccgtctc      4080
     atcttgcccc cgcacagata cggccaaccc actacggagg ggactgg                    4127
//
ID   Gypsy-10_RP-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   ACPB02036805;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_RP_;
KW   Gypsy-10_RP-I; Gypsy-10_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02036805; Positions  105404  105610.
XX
SQ   Sequence 207 BP; 69 A; 29 C; 30 G; 79 T; 0 other;
     tgtggcggca gcactctaaa gaattcaact cccatatggg actatatatt tttcttctat        60
     tttatacata tgataattat tattttctgt atataataat gttaaataaa taagatttag       120
     gcagttcgat tcagcatttg aaagaagtaa cgccttgttt ttattaagtg taattacttt       180
     ccataactgt agtatagaga cactaca                                           207
//
ID   Gypsy-10_SI-I repbase;    DNA;    INV; 4005 BP.
XX
AC   AEAQ01022779;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_SI_;
KW   Gypsy-10_SI-LTR; Gypsy-10_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4005
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022779; Positions     508    4512.
XX
CC   Positions [1358-1780] - Reverse transcriptase
CC   Positions [2825-3307] - Integrase core
CC   'AAGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1664..3712
FT                 /product="Gypsy-10_SI-I_1p"
FT                 /translation="MDDILIATESVKENLGVLKEIMIRLKTYSFELNLKKC
FT                 QFLKKKIEFLGYIVSQDGITLSPRHTEAIRSFRVPRNVHELQRFLGLVSYF
FT                 RKFTQDFSLKARPLYDLLRKNVAFKFDSSCIESFESLKDELTRAPTLALYN
FT                 PEAETELHTDASRVGLGAILLQKQANRKWSAVAYYSQTTNKAEKQYHSYEL
FT                 EMLAVVRAIERFHLYLYGIPFTIVTDCNAIVYAVNKASLNPRIARWTLTLQ
FT                 NYDFKMSHRPGDKMQHVDALSRCVGYVGELPLERELEFHQLADPRIKEICD
FT                 ALELEDSEKFEMVDGLLYRKLEDRSKFVIPESMVASVIRAHHDDAAHVGYE
FT                 KTLRGISENFWFPAMRKRVRDHISNCLTCVMANDASNRFEGETSLYPAPTA
FT                 IMQVVHVDHFGPLAETPGHYKHILVVVDAFSRFTWLTPVKSTTSRETIHRL
FT                 EDIFSLSGNPAELVSDRGTAFTSREFIDFIDRSRIKHRKVAVAAPWANGIV
FT                 ERVNRFIKGALTKILDEPDQWSVKLPVLQYLVNNTFHAGTETTPSKIVFGY
FT                 DQRNHSDYPLARFTKDWASIESDLESEKSRAHEAAYKATERLRNYNKMYRD
FT                 SKSRKPSLYCVGEYVLIRDDRTKPGENSKLKAKYKGPYVIEKVLGNNRYVV
FT                 KDIPGFNITSRPLNTILSSDRIKRWVKVPSPAGE"
XX
SQ   Sequence 4005 BP; 1133 A; 996 C; 1044 G; 832 T; 0 other;
     atttctcaga agtgggatag gcctcactat cccatgccgt gtcggaaata aaaactttac        60
     gtcgtgtaaa gccggggaaa accggcgccg agtgtcgtgc cgaacggata gcgtggagct       120
     tatccatatc gtgtcgagtc gagatccagt cggtaatcct tgtcgtccgc gagtttgagg       180
     agcgggatat ctctcgtatc cgcggaagtg tcgagtataa aattcgtcga gtcgttcagg       240
     cgcgccgcgc gggaacccgg taccagcggt accgaacgcg cgcgaattcc tgccgagccg       300
     gcacgcgcgg accgcgtgat aacgggtgtg gcgcagtgca aaacaccgtt tcggaagcag       360
     gccgagaggt gaaggtctta gaacgcgata atagcatcgg gaacagtgtc atcttgaagg       420
     tgtctgccat gaatcgagac gaaatggaaa atgcgactat ggagacgctc cagagggaag       480
     cgatcgcttg cggcattcca tttacaccag acagagtggc cttgatggag gcgatcctct       540
     cctaccggga gaggcacagg ccacccgcga tcagcagcgg agtaactaag ggagcgggga       600
     cctcggggag gaggcgcaac tgaagctgtc agcagcgtgc gtaaagttaa gtaatctttg       660
     cgacgaaacg tgtaatatcg aggcactaat cgataccggg agcccagtgt caattataaa       720
     atattccaaa tacaaaaagt acgtcgaacc gcatcagacg aatttgctgt ccccgaccaa       780
     aaaattaaaa agtatcgaac gacaccctca gggtgctggg ggtggccccc gttaatctaa       840
     agctgcagaa gctcggggac aggaaattcg ctgtaaagtt atacgttgtc gaggatcgcg       900
     agttccgagg ggacatgctc ctaggccgtg actttatcgc cggcgaaaac atatcgctca       960
     agtacgacct cgagaacgct gaaggagacg aggccgtcgc gacggtaaat ttgttcgatt      1020
     cattggaatg cgaggccgtg tcagagacca acgaacaagc gatccgcaac gccgaaatag      1080
     attacgatgc cgaggcaaaa caacaattga tccaaacaat cgtcgatgcc gaaaatacca      1140
     ccgtcgagcc gatagtcgac gactactgcg taaaagtccc ccttaaagat aattcggtgt      1200
     acgcgtatta tacgcgccgc gccgctttgc gcacatcgag cggctggaaa tcagaaaaat      1260
     aatagacgat ttattggcgc gaggggtaat aaaacagagc aggtcgtctt attgcgcgag      1320
     agtgattccg gtcaaaagga aaaacggaaa actcagactg tgtgtcgacc tgagaccgtt      1380
     aaatagcaga gttgcgaaac agaaatatcc ctttcccctc atagaggatt gcttatcgcg      1440
     gttgtgtggc aaaacagtat tcaccttact agacctgaaa gacggctttc accaaatcag      1500
     agtccaccct gaccatacac agtatttcgc tttcgcaact ccggacgggc aattcgaata      1560
     taactatctg ccgttcgggt actcggaagc cccggccgaa tttcaaagaa ggatcctaca      1620
     gatcctagac ccgctcgttc gggggggtag gattgtcgtc tatatggacg atatccttat      1680
     cgccaccgaa tcggtgaaag aaaatctggg ggtccttaag gagataatga tcagattgaa      1740
     aacatactcg ttcgaattga atttaaagaa gtgtcagttt ttgaagaaaa aaatagaatt      1800
     cctcgggtac atcgtctcgc aagacggaat cactctgagc ccaagacaca ccgaagcaat      1860
     acgttcgttc agagtaccga gaaacgtgca cgaattgcaa cggtttctag gattagtcag      1920
     ttattttcgg aagttcacgc aggacttctc cttaaaagca aggccactgt atgaccttct      1980
     caggaagaac gtcgcgttca aattcgacag ttcgtgcatt gagtcgttcg agtccttgaa      2040
     ggacgaactc accagagcgc ccacgttagc gctctataat cccgaggccg aaaccgagct      2100
     ccataccgac gcgagcagag tcggccttgg cgctatcctc ctacagaagc aggcgaatag      2160
     gaagtggtcg gcggtagcgt actacagcca aactacgaat aaagccgaaa agcagtacca      2220
     cagctacgag cttgagatgc tcgcggtagt tagagcaatc gagcgttttc atttgtacct      2280
     ctatggtata ccgttcacca tagtgactga ctgcaacgcg atcgtctatg ccgtaaataa      2340
     agccagcctg aatccgagga tagcgcgatg gaccctgact ctgcaaaact atgactttaa      2400
     aatgtcgcac cgaccgggag ataagatgca gcacgtagat gcgctgagtc gatgcgtcgg      2460
     ctacgtcggc gaactgccgc tcgagcgcga acttgaattt catcagctcg cggatccccg      2520
     gatcaaggaa atctgcgacg cattagagtt agaagatagt gaaaaattcg agatggtaga      2580
     cggtttactc taccgaaaac tggaggacag gtcgaaattt gtcataccgg agtcgatggt      2640
     cgcgtcggta ataagggcgc accatgacga tgcggctcac gtgggatacg aaaaaacgct      2700
     tcgcggtatt tcggagaatt tctggtttcc cgcgatgcgc aagcgcgttc gagatcacat      2760
     cagcaactgt ctgacgtgcg tgatggcgaa cgacgcgtcc aaccgcttcg aaggagaaac      2820
     ctcgttgtac ccagcgccga ccgcgattat gcaagtcgtt catgtagacc acttcggtcc      2880
     gctagccgaa acgccgggac attacaaaca tattttagtc gttgtcgacg cgttttcgcg      2940
     attcacgtgg ttaacaccgg tgaaatcaac cacgtcaaga gagacaatac accgcctcga      3000
     agatatattt tcgctctccg gaaatcccgc cgagttagtc tcggaccgag gcaccgcgtt      3060
     cacttcgcgc gagtttatag atttcatcga tcgcagccgg atcaaacacc ggaaagtggc      3120
     cgtagccgcc ccctgggcca acggaatcgt ggaacgagta aaccgattca taaaaggggc      3180
     ccttactaaa atcttagatg aacccgacca atggagcgtc aaactgccgg ttctccagta      3240
     cctcgttaac aacacctttc acgcgggaac cgaaaccacc ccatctaaaa ttgtattcgg      3300
     ctacgatcag cgtaatcatt ccgattaccc cctggcgcgg ttcaccaagg actgggcgtc      3360
     aatcgagtcc gatctcgaaa gcgaaaaatc cagagcacac gaagctgcct ataaggcaac      3420
     ggagagactt agaaactaca acaagatgta ccgagacagt aagtcccgca aaccctcgtt      3480
     atattgcgtt ggcgaatacg tcctaatccg cgacgacagg acgaaacccg gggagaatag      3540
     taaactgaag gccaaataca aagggccgta cgtaatcgag aaggtactcg ggaataacag      3600
     gtacgtcgtc aaagacatcc cggggttcaa tataacctcg cgacccctga acacgatcct      3660
     ctcatctgac cggataaagc gttgggtcaa agtaccctca ccggcgggcg aatagcgccc      3720
     gcggacacca aaggtgatca tagtaatata ggcctctttt gaaaaaaaaa aatgtatata      3780
     tatatttgcg accatgcctg tataaagatg gtctcataat gtgtccgtcc gaaccgtcga      3840
     catgtacaaa attagttgta agggctcgcg ctgtgtcaaa ggcacgctgc ctcgcatgct      3900
     ataaatgtaa taagtactcc taccggagga cgaggtatac attagactag ctcgtacgcc      3960
     ataaagaagg cgcttaggga ctaagcgcat gcaggacggc cgagc                      4005
//
ID   Gypsy-10_SI-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   AEAQ01022779;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_SI_;
KW   Gypsy-10_SI-I; Gypsy-10_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-295
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022779; Positions     213     507.
XX
SQ   Sequence 295 BP; 78 A; 74 C; 84 G; 59 T; 0 other;
     tgtaaggagg cggccctgag caggacttag ccgtgggaga agctgtccga aagtcggagc        60
     gccgagcgcc tgtgattagg cgaatagcga tcgctcctgt agagccgcgc gcaggtgtta       120
     gcccccgttt ccggaaaagt cgtattgtaa ccggagcgga gcagagagac actctcgatc       180
     gtgtcgccgt gcgaacaaga taaccgcgag tctgtcgaat caactgtata agaaaataaa       240
     gtgtcttgcc aaccattaac cacgagtcga ttcataccat cctgaaagtc ttaca            295
//
ID   Gypsy-10_SiCu-I repbase;    DNA;    INV; 6741 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-6741
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5136-5136 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           590..1753
FT                 /product="Gypsy-10_SiCu-I_1p"
FT                 /translation="MPPKRRKNDAIESNSIPDVRIMATANRRITRRQDDPP
FT                 VPTDDMLPQYPPTPTQPPTANSLHPHSPPYPYISAVPLSQIIQSFRTYDGM
FT                 SPAELWLNKFHADLRAHHLDSKWAWNNIDRFFSGPVQSWFSSREVELQSPL
FT                 SPFETDDGRLGLIQKELVANFGTTTFRSQAKLKCSQITFDLKSDPQNYVMT
FT                 KLEAIALIDPFMPNEKKVQKLIGGLPEPLRTQMTIGIDPITTSPTQLLTRL
FT                 RAYMELNPIQPHPQKVQTTPNPPQPRFFQQTSPTYSSTPIARPIQYNTPQQ
FT                 STIRPSSFTCHYCNKSGHREAECFSKRRDMGMPIPACQYCGIEGHSAERCR
FT                 SRLLHLDQARYPNSVNRNQSQPNGFRPPIPSRNPFTPPTNNNSGN"
FT   CDS           1744..6738
FT                 /product="Gypsy-10_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FGKLNSLLQRDQQANLAITTNILYTTPQSSPVDPNLP
FT                 PQPLKQSVNPPTLSNIHTDASENTATIYTTSEQGDEYPCRFRSSYAVNLLK
FT                 EVIRFDSFTVESTIDNGANISVISPTTLSEIPETLIHKRTKVPPLYIELAT
FT                 TTHPPQLINECVELLFKFERFSQKFLWRFYILPTSTNPILIGSDFLQSSPF
FT                 LIDPRQNKLMLRIDLPENPICPDDESCSSNKEKTGSDIHHIFEVKTLQSLV
FT                 IAPNSTQRIQLSTQIPTNTDISIHPDPAFTANTILACPHSVCPVKDQLTYT
FT                 FVTNPSNTPVKIPSQKIIAYASPVVLTSPLINIDPQPSRTHSMNNITCYPP
FT                 VVDPDIEQLDLPEHLSAEQTLQLKLILSKYRHVFAFRPHELGCTSLVQHHI
FT                 DTGDSPPVRQPPYRASHFERQELKQEVQKLLELGVVTPSNSPYASPVVLVK
FT                 KPDGTWRFCVDYRRLNKVTKSDVYPLPRMDDALDRLAGVKFASTLDLMSGY
FT                 YQVPMDKLSQQKTAFVTPDGSYEFTRLPFGLSNAPSTFQRLMDNVLSHLKW
FT                 SMVLVYLDDILCLGRTFAEHLDTLEQVLQALETAKLTLKPSKCHFAEKKLR
FT                 FLGHIISEHGIEVNPEKIRAVEEFPTPTSPKTVKSFLSLCSFYRRFVPSFS
FT                 KIAHPLIQLTKKNVPFKWEDQEEKSFQALKDTLSSPPVLAHFDPSLPTEIH
FT                 TDASRVGIGAVIMQLDRNNLSRRPIAYASRTLNSAEKNYAITELECLAVVY
FT                 SIDKFRPYIYGRPFTVVSDHCALCHLLNLKNPNGRLARWALSLQPYSFTVK
FT                 YNSGKAHGHADALSRSPVPNDSPNLTDNLLFNVNAQSAGDNFPDIISAQKA
FT                 DPKFGPIIRSLTTDNEQNPSKSPHKSNFALFNNILYKSNTEPNLPLWTLCI
FT                 PMSLRHKALEIVHDDPSGGHFGLFKTWSRIRSRFWFPGMYSFTRIYVERCE
FT                 TCQLFHRRNHLPTAPLCPMKPPKRPFQKIAIDFIGPFPRSHSGKCYVLTIS
FT                 DHHSRYVEAVPIPRATASNTITAISKYVLYRHGSPEIILADQGSQFESNEF
FT                 KTFCKDNKICLQFTPPYSPNANGLCEKNNDTIKRTLAKLLHDHTGDWENHL
FT                 QPAVFAHNTSTHAVTKYSPYFIVHGREPRLPVDTVFPTTVISSVPETPYTR
FT                 SKAAQIASEKVHENTIKFQEKQADVFNSSHPYRSFSPGDLVLHARLESTPG
FT                 KVQKLEPKWRGPYKILSQTSPISYEVQDLRPNRRQRDKNFVANSRNLRKYH
FT                 PSLATNFLSISFQMDHSGSPVPSEEVSLSGSDVEVSKDEVDAILNGPSWAE
FT                 QVEDAERELQAVKLTEPQTPSDDQSPPIEDSVTHADQPQPVDRPADHMSFV
FT                 RSQSPLTTETTTTPDQDPEEPLYKSVNFYPTPWPGNAGFGSITLQPEGRRR
FT                 LPSQMTRHRQAPEPEKVPRTYLYDIRPQATSPNPPNSTDRVLRNPPYRPEN
FT                 PRPQYNVIDFPPLNSQTISRQQRSRTKFSPSLPLIQPQYSFAEFLKIPFPD
FT                 NFGPKIRDLETAPIKKSPPPLMSTQIPTPTLAQPATINSLVATKPHNKKHV
FT                 APRHHPYRIPPLLMSVDPTHIHPPTLPIHCIFCSSKSHNSRQCPTKIPRSQ
FT                 LYSLHGKKICFVCQSTTHLISECPYLPHDPPPPASATPLRGVFPGGA"
XX
SQ   Sequence 6741 BP; 2012 A; 2057 C; 1068 G; 1604 T; 0 other;
     aggcgccggt tttaaggacg cgacggtgtg ttgtcgccgc ccgtgtaccc ctcgataagc        60
     cagcgagtag ctacccaact ccacccccac acaaaataaa ccaccacaca ttcccaaggc       120
     ttaaatataa tttaaaaaaa aaacaacagc aacaattaaa aattccccaa caacacaccc       180
     aaggaacctc atcaacctaa ttaacctcat caacccaatt aacctcatca accaattaac       240
     ctcatcaacc caattaacct catcaaccca attaacctca ccgacccaat taacctcatc       300
     gacccaatta acctcatcga cccaattaac ctcatcgacc caattaacct catcgaccca       360
     attaacctca tcgacccaat taacctcatc gacccaatta acctcatcga cccaattaac       420
     ctcatcaacc ctattaacct cataacaccc aagtagccta atcacaccca attaacctaa       480
     tcacagctaa agccgcacaa taatctaaac tatccgcctc aaatagcaat taggtccaaa       540
     gaaaccccca taaataaatc ccaaccacaa gtttaatttt caattgaata tgccaccaaa       600
     aaggaggaag aatgacgcca tcgagtctaa ttctatccct gacgtacgga ttatggctac       660
     agctaaccgt cgtataactc gacgtcaaga tgacccacct gttcccacag atgacatgtt       720
     gccccagtac ccaccaacgc ccacacaacc accaactgcc aactcactcc atccccatag       780
     cccaccgtac ccgtacatat ctgccgttcc cttgagccaa ataattcaaa gttttcgaac       840
     ttatgacggc atgtcaccgg cagagctctg gctaaataag ttccacgcag atcttcgtgc       900
     acaccattta gatagcaagt gggcatggaa taatatagac cgattcttca gtggccctgt       960
     acaaagttgg ttttccagtc gtgaggtgga attacaaagt cccctatccc ccttcgaaac      1020
     agacgatggt agattaggat taattcaaaa agagcttgtt gccaattttg gtacaacaac      1080
     atttagatcc caggcaaagt taaaatgttc tcaaataacg tttgacttaa agtcagatcc      1140
     tcaaaactat gtgatgacga agctagaagc aatagcactt attgatccat tcatgccaaa      1200
     tgaaaagaaa gtccagaagc taattggtgg tcttcccgaa ccccttcgta cacagatgac      1260
     tataggaatt gaccccatta caacttcccc aactcaactt ttaacacgtt tacgtgcgta      1320
     tatggaactt aatccaatcc aaccacatcc acaaaaagta caaaccacac caaacccacc      1380
     ccaacctaga ttctttcaac aaacaagtcc aacatactct tctaccccca tagccagacc      1440
     aatccaatat aatacacccc agcagagcac cattcgaccc tccagcttta cctgtcacta      1500
     ctgtaacaaa tccggacata gagaagccga atgtttctct aaacgccgag acatggggat      1560
     gcccatccct gcatgccaat attgtggcat agagggtcac agtgcagaaa ggtgtcgatc      1620
     cagattactc catcttgacc aagcccgata tccaaacagc gtaaaccgca accagagtca      1680
     acccaacgga tttcgcccac caattccctc ccgaaacccc ttcacaccac caacaaataa      1740
     taattcggga aactaaatag cctgttgcag cgggatcaac aggccaattt agccattact      1800
     actaacattt tatatacaac ccctcaaagt agcccagtcg acccaaacct ccctccccag      1860
     cccctcaaac aaagtgtaaa cccgcctaca ctttcaaaca tccatactga tgcgagcgaa      1920
     aataccgcca caatttacac tacctcagaa cagggagatg aatatccctg ccgctttcgc      1980
     tcctcctatg cggtcaactt acttaaagaa gttattcggt ttgattcctt tacggttgag      2040
     agtaccatcg acaacggtgc taatatttcg gttatatccc ctaccacgtt gtcggagatc      2100
     ccggaaaccc ttatacataa acgcaccaaa gtccctccat tatatattga gttagcaacc      2160
     acaacacacc ccccacaatt aatcaatgaa tgtgttgaac tgctatttaa gttcgaacgc      2220
     ttcagtcaaa agtttttatg gcgattttat atccttccca cgtcgacaaa tcccatactc      2280
     atcggatcag acttcttaca gtcctcccca ttccttatcg acccaagaca aaacaaactt      2340
     atgttaagaa tagacttgcc agaaaaccct atttgtcctg acgatgagtc atgtagctcc      2400
     aataaagaga aaacaggtag tgatatccat cacatattcg aagtgaaaac ccttcagtcc      2460
     ctagttatag cgcccaattc aacacagcgt attcaactta gtacccaaat tccaacaaac      2520
     acggacatat ccatccaccc agaccccgct tttacggcaa atactatcct cgcttgtccc      2580
     cacagcgtgt gccctgtaaa ggatcaactt acctatacat ttgtaacaaa tcccagtaac      2640
     accccagtaa aaatccctag tcagaagata atcgcatatg cgtccccggt agtgctaaca      2700
     tcaccgctaa taaacattga cccgcaaccc tcaagaaccc attctatgaa taatatcacg      2760
     tgctaccccc ctgttgtcga ccctgatatt gagcagcttg accttcctga gcacttgtca      2820
     gcagaacaaa cacttcaact gaagctcatt ctttcgaaat atagacacgt cttcgccttc      2880
     cgaccccacg agcttggctg tacctcgcta gtccaacacc atattgacac cggcgattcc      2940
     cctccggtcc gacaaccacc ttaccgtgcc tcacattttg agcgccaaga actcaaacag      3000
     gaagtccaga aactattaga attgggagtc gttaccccat cgaattcccc atacgcatcc      3060
     ccggtagtcc ttgtgaaaaa gccagatggt acatggagat tctgtgtcga ttaccgccgt      3120
     ttgaataaag tcacaaaatc cgatgtttac cccctaccac gtatggacga cgctctagat      3180
     cgcctagctg gtgtaaagtt tgcctcgacc cttgacctta tgtccggata ttaccaagta      3240
     ccaatggaca agttatccca gcaaaaaaca gcatttgtta cccctgacgg atcatacgaa      3300
     ttcacccgac tcccttttgg attatcgaat gccccttcta catttcaaag gttaatggac      3360
     aacgttttga gccaccttaa gtggtccatg gttttagtgt atcttgacga cattttgtgc      3420
     ttgggtcgaa cctttgccga acatctagat acccttgaac aagttctaca agccctcgaa      3480
     accgccaagc ttacactaaa gccatctaag tgccactttg ccgaaaagaa attgcgattt      3540
     ctcggtcata ttatttctga acacggaatt gaagtaaacc cagaaaaaat aagagcggtt      3600
     gaggaattcc caacacccac gagcccaaaa accgttaagt cctttctatc cctttgctcc      3660
     ttttaccgac gttttgttcc cagtttctcc aaaatcgcac atcctctcat tcaactgaca      3720
     aagaaaaatg ttccctttaa gtgggaggac caggaggaaa aatccttcca agctcttaaa      3780
     gacactcttt catccccgcc agtactagcc catttcgatc cttcactccc caccgaaata      3840
     cataccgacg catctagagt gggaataggt gccgttatca tgcaattaga tagaaataat      3900
     ctttctcgac gcccaatcgc gtatgcctcc cgaaccctaa actccgccga aaagaattat      3960
     gctattacag aacttgagtg tttggctgtc gtatattcca tagataagtt ccgcccatat      4020
     atatatggcc gccctttcac tgtcgtatct gatcattgtg ccttgtgtca cttgttaaac      4080
     ctaaaaaacc caaatggtcg cctcgctcga tgggcactgt ctctccaacc ttactcattc      4140
     acggttaaat ataactcagg aaaagcccat ggtcacgccg acgcactctc cagaagtccc      4200
     gttcccaacg acagtcctaa tcttacagat aatcttcttt tcaatgtaaa cgctcagtca      4260
     gccggcgaca atttcccaga tataatttcc gcccaaaaag cagacccgaa gttcgggcca      4320
     ataatcagat ccctcaccac cgataacgaa cagaacccgt ccaaatcacc acataaatca      4380
     aattttgccc tctttaataa catcctgtat aagtcgaata ctgaacccaa tcttcccctt      4440
     tggactctat gtatcccgat gtcccttcgc cataaggctc tcgaaatagt ccatgacgat      4500
     cccagcggtg gccatttcgg cctctttaag acatggtccc gtatccgttc acgcttttgg      4560
     tttcccggta tgtatagttt tacccgaata tacgtcgaaa ggtgtgagac atgtcaatta      4620
     tttcaccgtc gtaaccatct tcccacagct ccactttgtc ctatgaaacc tccaaagcgc      4680
     ccatttcaga aaattgccat cgatttcatt ggtccattcc cacgatccca ttccgggaag      4740
     tgttatgtac taaccatttc cgaccaccat agccgatacg ttgaggcagt cccaattcct      4800
     cgcgcaacag cctctaatac catcacagca atttcgaagt atgtcctcta tcgccatgga      4860
     agccctgaaa tcatactagc agaccagggt tcccaatttg aatccaacga atttaaaacg      4920
     ttctgtaaag acaacaaaat ttgtctccaa tttactcccc cttactctcc taatgccaat      4980
     ggactgtgcg agaaaaataa cgacactatt aagcggacgc ttgctaagtt actacacgat      5040
     cacactggcg actgggaaaa tcatctccaa ccagccgtgt tcgcacataa tacaagtact      5100
     cacgctgtta caaaatactc cccatatttt attgtccacg gcagagaacc gcgtctcccc      5160
     gtcgacaccg tatttccaac tacagttata tcatccgtcc ccgaaacccc atacaccaga      5220
     tccaaagctg cgcaaatagc ttctgagaag gtccacgaaa atacaatcaa atttcaagaa      5280
     aagcaagcag acgtattcaa ttcctcccac ccataccgct cattctcccc tggagattta      5340
     gtcttgcacg cccgattaga atcaacgcca ggaaaagtcc aaaaacttga acccaaatgg      5400
     cgaggtccct ataaaatcct gtcccaaacc agtccaatat cctacgaagt ccaagatctt      5460
     cgacccaacc gcagacagcg agataaaaat tttgtagcca actcaaggaa tttgagaaaa      5520
     tatcacccct ccttggcaac aaatttttta tctatctctt ttcagatgga ccacagtggt      5580
     agccccgtgc cttctgagga agtttccttg agtggaagtg acgtggaagt cagcaaggat      5640
     gaagtggatg ccatcttaaa tggtccttcc tgggcagagc aagtggagga tgctgaacga      5700
     gagttgcaag ccgtgaagtt gacggagccg caaactccat cggacgacca aagcccacct      5760
     atcgaagatt ccgtgaccca tgctgaccag cctcaacccg tagaccgacc agctgaccac      5820
     atgtctttcg ttcgtagtca atcccctctt accaccgaaa cgaccacgac ccctgatcaa      5880
     gatccagagg aaccgttgta taagtcggtg aacttttacc caactccgtg gccggggaat      5940
     gccggttttg ggtccattac cctccagccg gaaggtcgcc gtcgactccc atctcaaatg      6000
     acccgccatc gtcaagcacc ggagcccgaa aaagttcccc gaacgtacct ctacgatatt      6060
     cgtccccagg ctacgagtcc caatccccca aactccaccg atcgcgttct ccgaaatcca      6120
     ccttaccgcc cagaaaatcc tcgcccacaa tacaacgtta ttgatttccc ccctcttaac      6180
     agccaaacca tttcccgtca acaacgttcc cgtaccaaat tttccccatc tctaccccta      6240
     attcagcccc aatattcgtt tgccgaattt ttgaaaatcc cattccctga caattttggc      6300
     cccaaaatcc gtgaccttga gactgcccct atcaaaaaat ccccaccacc gctcatgtca      6360
     actcagatcc ccacccctac cctagcccaa cccgcaacca taaattccct cgtagcaaca      6420
     aaaccacata ataagaagca tgttgcccct cgccatcatc cataccgcat ccccccgttg      6480
     ctcatgtcag tagaccccac ccacattcac cccccaaccc ttcctataca ctgtattttt      6540
     tgttcctcca aatcccataa ttcacgccaa tgtcccacga aaatcccccg atcccaacta      6600
     tattccctac atggaaagaa aatatgcttc gtctgtcagt ctaccaccca cctcatctca      6660
     gagtgcccct acctacccca cgacccccca ccccctgcct cagcgacgcc actgcgtggc      6720
     gtcttccccg gaggagcccc a                                                6741
//
ID   Gypsy-10_SiCu-LTR repbase;    DNA;    INV; 652 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-652
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4978-4978 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 652 BP; 194 A; 145 C; 126 G; 186 T; 1 other;
     tgaagcgcgt ctcacaattc ccctccctct aatgccgcca gttgtgcaca ccagcatgca        60
     agcagtccgc ttgtggtsga gttgtccaaa gaagaagaga gaaaaaagta attcagtcag       120
     tcagtcagtg agtcgtaagt gaaaaaaaga agggagataa ggagaggaag tcggtttttg       180
     tcgttggttg tccgtgtcaa atagtgagag tgtcagaata attataattg tataattaat       240
     ttgtcttggt ccattttagt cttttgtcca gaagaagtgt aaagtcagtc aagtacgtta       300
     atgtcagtta agtccctaaa aaagtcagta agtcagttaa tgtcagttaa gtccatataa       360
     agtcagttaa gtccgtaata gtcaataaag tccgttgtcc tcaattggtg cgtcaatcgt       420
     catttgtctt cctaatccgt aaagtcatta gtaaagtccg aaaagtcagt cgtccgtaag       480
     tcaaggtcag ataatgtcat cgtctaccgt aagtcccatc acctaaatta caattattgt       540
     cattgtcgtc atcatcatca ccactccctc caagaagccc agttttcccc ttgtagccca       600
     gtgtcccccc aactttaccc caaaaccccc aacatcattc tcccacattt ca               652
//
ID   Gypsy-10_SiOr-I repbase;    DNA;    INV; 4535 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4535
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 337-337 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..1202
FT                 /product="Gypsy-10_SiOr-I_1p"
FT                 /translation="MAVRRTPPADNSRNSPPLTRLGARRMNEELQTTPTFS
FT                 QRNESVIPEQTSSGRQPTGAVRRRNIPENERIPLSNASRGLPRYPTQKSPI
FT                 YTSGMDFQGRNIPYFLGEQVKVPDSTRIAQQTNQHPRQPPPPYDNRDFNNL
FT                 DSFIRNIVNQSITDTFKNNNQQTLPFQIDNISEYNRILANIDNMLPEFHGN
FT                 NTLHPIDFLEKIKFLLQRNNTSFLEIKFLLAKKLQGRAKAWSEAYLKSFLT
FT                 FTEFEEAYLRYFWSETKQLEIKLKIWQGKYETGSLVDHFTKYVAMAQYLRP
FT                 PLSEFELIQCIARHFPVNIFSAIIGLKKLSEVIPILQQAEYYNHRTVDRSN
FT                 FGSRYEKDRLGPERKNYANRNVSAVDLVDDLGVANLEISGNEPSHSL"
FT   CDS           1088..4504
FT                 /product="Gypsy-10_SiOr-I_2p"
FT                 /translation="VGTRKKKLCKSKRIRGGFSGRFRGSEFGNIGKRAEPQ
FT                 SLGPETTDSGKMAVILNKNMEEEPWGSDCEFDHLNIENKKSPVITVSIFNF
FT                 SFPALIDSGSEISCISGDVYAQLGDFQEKIPSFPVTGIRITGAFKTKQRKI
FT                 AKQLFLDFKIANNYFSYEFLLISDLVFPIILGIDFLFSVKSKINLENDTIT
FT                 LLNSNKEFFTVSTINTIHFYIPPSDIKKTRTIALKKEYSLNTLNTDRNGFN
FT                 TEFINENKSLTFEQKNQFKYLLLKYKNIFSDIPGRTELYYHKIKLINETPF
FT                 KVKQYPIPIAHREAVDNEIKRMLDWGVIERASTQYISPLVTEVKKDGSVRV
FT                 CLDARHLNRVLEKEYELPRPIDDIMKSLFGKPFKTSLDLSSGYWQIPLRPS
FT                 DKKYTGFLVGTKCYQFTVLPFGLSTAVSSFSRCISEILGSEFDDFVIPYLD
FT                 DILIASKNFEDHLNHLDQVFSRLNEAGLTVKFRKCQFMPEKLNYLGYIVST
FT                 NNIEPDPERIQCVQDYPKPKNKKDIQSFLGLCNYDRGFCENFSGVTEPLSK
FT                 LLRTKNKWVWNTEQDRAFDELKRLLKNATLLYHPDNTATYYVQSDASDYAI
FT                 AAQLFQRIEGERRVIAYASRLLLDRERNYTSNEKEILALVFALKKWRIYLL
FT                 GRHFEVLTDNRALCYIQTCRLLTPRVTRWALALQEYDFKISFVKGSENKIA
FT                 DILSRNPGIRYSVPGEKCFKVFSSSIKFPDKLNTLLKKLPAAQKNDSYFGP
FT                 IYKSLENQQLDEKINKFVLKNQLLFVRESDDESYRLCIPSEFKNKIIYDYH
FT                 VSLGHFGIFKTWSILKNDFWWKGMFRDIKKCLKACDICQKAKLSLLPKAPL
FT                 SPVISEKKNEIISLDLYGPLPQSTGGVTFLCVIVDLFTKYVTLYPLKKATT
FT                 RAILNRLILDYFKKMGKPERILTDHGSQFTSKSWSHTLQPLGIKVVHCSVR
FT                 HPQSNPVERYMRELGRLFRTYCFEQHTAWAKHVRKFGQFFNSVVHESTGFT
FT                 PSELHFKEPLTSFTRELVDYPDSPKVLSYEKKLILAKEILQSRAERRKILH
FT                 PGRHYKEFATGDLVLLKANPVSSALSSKTKKFLLLFEGPYRIKKKVGLSTY
FT                 ILIMENTDEERGMFHVSHLKPYNSDVSSLKE"
XX
SQ   Sequence 4535 BP; 1538 A; 772 C; 843 G; 1382 T; 0 other;
     tcttggctac ccaactacgg ccgagtctaa gaatggcagt tcgacgaaca cctcctgctg        60
     ataacagtcg aaattcacca cccttaacac gtctgggggc gagaagaatg aacgaggagc       120
     tacaaacaac tcccacattt tcccagcgaa acgagagcgt cattccagaa cagacttcaa       180
     gtggaagaca acctactgga gctgtccggc gtaggaatat tccagaaaat gagcgcattc       240
     ctctttcgaa tgcatccaga ggtttgccac gctatcctac acagaaatca ccaatatata       300
     catcgggcat ggattttcaa ggtaggaaca ttccatattt tttgggtgaa caagtaaaag       360
     ttcctgattc tacaagaatt gcacaacaaa ctaatcaaca cccacgccaa ccaccaccgc       420
     catatgataa tagggacttt aataacttag atagttttat aagaaatatt gtaaatcaat       480
     ctataacaga tacctttaaa aataacaatc aacaaacttt accttttcaa attgataaca       540
     ttagcgaata taatagaatt ttagcaaaca tagataatat gcttccagaa tttcatggta       600
     ataatacgtt acaccctata gattttctag aaaaaattaa gtttttatta cagagaaata       660
     atacctcatt tctagaaata aaatttttat tggcaaaaaa attacagggt agagctaaag       720
     cgtggagtga ggcatatctt aaatcatttc ttacttttac agaatttgag gaagcatatt       780
     taagatattt ttggagcgaa actaaacaac tagaaataaa attaaaaatt tggcaaggaa       840
     agtatgaaac tggctctcta gtagaccatt ttacaaaata cgtagctatg gcacaatatc       900
     tcagaccacc cctgtctgag tttgaattaa ttcaatgtat agcccgccat tttccggtaa       960
     atatatttag cgctataata gggctaaaga aattgtcaga agtaatccca atactgcaac      1020
     aagcggaata ttataatcat agaacggtag acagatcaaa ttttgggtcg cgttatgaaa      1080
     aggataggtt gggacccgaa agaaaaaatt atgcaaatcg aaacgtatcc gcggtggatt      1140
     tagtggacga tttaggggta gcgaatttgg aaatatcggg aaacgagccg agccacagtc      1200
     tttagggccg gagacaactg acagtggcaa aatggccgta atactaaata aaaatatgga      1260
     agaagagcca tggggctctg actgtgagtt tgaccatctt aacattgaaa ataaaaaatc      1320
     accagttatt actgtttcaa tttttaattt ttcttttcca gcactaattg acagcggctc      1380
     agaaatatcc tgcatatccg gtgacgttta cgctcaattg ggagattttc aagagaaaat      1440
     tcctagtttt ccggtaacgg ggattcgtat tacaggggcg tttaaaacaa aacaacgtaa      1500
     aatagcgaaa caattgtttc ttgattttaa aatagctaat aactatttta gttatgaatt      1560
     tttattaatt agtgatttag tttttccgat aattttaggt attgattttt tattttcagt      1620
     gaaaagtaaa ataaacttag aaaatgatac aataacatta ttaaattcta ataaagagtt      1680
     ttttacagtc tcaacaatta atacgattca tttttatatt cctccgagcg acattaaaaa      1740
     aactagaacg atagccttaa aaaaagaata ttccttaaat actttaaata ctgatcgaaa      1800
     tggttttaat acagaattta taaacgaaaa taaatcttta acatttgaac aaaaaaatca      1860
     gtttaagtat cttctcttga aatataaaaa tatattttct gatataccgg ggcgaaccga      1920
     attgtactat cacaaaatta aattgattaa tgaaactcct tttaaagtta aacaatatcc      1980
     tataccaatt gcacatcgtg aagctgtaga taatgaaatt aagcgaatgc ttgattgggg      2040
     ggtaattgaa agggcttcca cccaatatat tagtccgtta gtcacagagg ttaagaaaga      2100
     tgggtcggtt cgcgtctgtt tggatgcgcg acatttaaat cgggtattag aaaaagaata      2160
     cgagttacca cgacctattg atgatattat gaagtctttg ttcgggaaac catttaaaac      2220
     tagtcttgat ttgtcgtctg gatactggca aatacctctg cgcccaagcg ataaaaagta      2280
     tacgggattt ttggttggta ctaagtgcta tcaatttacg gtgttacctt tcggactttc      2340
     taccgctgtt tcttcatttt cgcgatgcat ttctgagata ttgggttcag agtttgatga      2400
     ctttgttata ccgtatcttg atgacatttt gatagcttcc aagaattttg aagaccattt      2460
     aaatcatttg gatcaagttt tttcccgtct aaacgaagct gggttgacag ttaaatttcg      2520
     aaagtgtcaa tttatgccag aaaaattaaa ttatttgggt tacattgtaa gcacaaataa      2580
     tatagaaccc gatcctgaaa gaattcaatg cgttcaggat tatccaaaac cgaaaaataa      2640
     aaaagatatt cagtcatttt tgggactatg taattacgat cgagggtttt gtgagaattt      2700
     ttcgggcgta acagaacctt taagtaaatt attaagaaca aaaaataagt gggtttggaa      2760
     tactgaacag gacagggctt tcgatgagtt aaaacggtta ctaaagaatg ctacactact      2820
     ataccacccc gacaatactg ccacttatta cgtacaatct gatgctagtg attacgcaat      2880
     agccgctcaa ctgtttcaaa ggatagaggg agaacgacga gtaatagcgt acgctagtag      2940
     acttttactt gatcgggaaa gaaattacac atccaacgaa aaagaaatct tggctcttgt      3000
     atttgcgtta aagaagtggc gaatttattt attaggacgt catttcgaag tgctaaccga      3060
     taaccgagct ttatgttata ttcaaacgtg tcggttactc acgcctcggg taactcggtg      3120
     ggctttagct ctgcaagagt atgattttaa aatatctttc gttaagggtt cggaaaataa      3180
     aatagccgac atactatcga gaaaccctgg tattcgttat tcggttccgg gtgagaagtg      3240
     ttttaaagtg ttttcctcgt cgatcaagtt tcctgataag ctgaacacgt tattaaaaaa      3300
     actacctgcc gcgcaaaaaa acgatagtta ttttgggcca atttataaaa gtttagagaa      3360
     tcaacaactt gatgaaaaga taaataaatt tgttcttaaa aatcaattgc tttttgtaag      3420
     agaatcagac gatgaatcct accgtttgtg cattccatca gaatttaaaa ataaaattat      3480
     ttatgattat catgtttctt taggtcattt tggaattttt aaaacatgga gtattttaaa      3540
     aaatgatttc tggtggaaag gcatgtttcg tgatatcaaa aaatgcttaa aagcgtgtga      3600
     catttgccaa aaggcaaaat tgagtttatt accaaaagct cctctttctc ctgtaatatc      3660
     cgagaaaaaa aatgaaatta ttagtctgga tttatacgga ccgttacccc agtctacagg      3720
     gggcgttaca ttcttatgtg tgattgtcga cttatttacg aaatatgtga cattataccc      3780
     tttaaaaaag gccactacca gagctatttt aaaccgttta atattagatt attttaaaaa      3840
     aatgggtaag cctgaaagga tattaactga tcatggttcg cagtttacgt caaaatcctg      3900
     gtcacatact ttacaacctc ttggaattaa agttgttcat tgttcggtaa gacaccctca      3960
     gtcaaacccg gttgaaagat acatgcgcga attaggtcgt ctctttagaa catattgctt      4020
     tgagcaacat acggcctggg ctaaacatgt acggaaattt ggtcagtttt ttaattctgt      4080
     ggtgcatgaa tccacaggct ttacaccttc cgaattacat ttcaaggaac cgcttacctc      4140
     ttttacacga gaactggtcg attatcctga tagtcctaag gtgcttagtt atgaaaagaa      4200
     acttatttta gctaaagaga tcttacaaag ccgcgctgaa cgtcggaaga tattacaccc      4260
     tggtcgacat tataaagaat ttgctactgg agatctggtg ttgcttaaag cgaaccccgt      4320
     ttcttcagcc ctatcatcaa aaaccaagaa gtttcttctt ctttttgagg gtccatatcg      4380
     tattaaaaag aaggtaggcc tgtcaactta tattttaatt atggaaaata ccgacgaaga      4440
     gagaggtatg ttccacgtgt ctcatttgaa gccttataac tcggatgtgt ctagcctaaa      4500
     agagtaaagc tacttttatt tagacagggg gcggt                                 4535
//
ID   Gypsy-10_SiOr-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-375
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 379-379 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 375 BP; 107 A; 60 C; 64 G; 144 T; 0 other;
     tgtagcagcc ataacaatgt ggggaatctt atttggtcgt agctctacct ggagagtcag        60
     ttttttattt aaatcttttt ttgcgccttg catatttgaa ttcgattctc attttactct       120
     cgctactgta cgctgaaaca actattctta ttgtattcat tttattatcc tgtggccata       180
     aagtgtaaaa ctgtactttt aaaagttagt agaaaggctt gataggtaag attgtaccat       240
     atatataaaa ttttccccct gctaagtaaa tgtatagtat tttagatacc aagaataaag       300
     aattttcgga gtgtttttcg aagagttttc tttgacttga gcgaacccct aaccctttat       360
     aagagttttg ttaca                                                        375
//
ID   Gypsy-10_SpEx-I repbase;    DNA;    INV; 5847 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5847
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4065-4065 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           654..1892
FT                 /product="Gypsy-10_SpEx-I_1p"
FT                 /translation="MALELNDIYEKLRKLKENLFKLSLERRTPERLKEKLN
FT                 EATIIYNDYSVLLVSIRKQIDNKTISGESLSLVKSHCDKIVELNAQIQEFC
FT                 SKLHLPVTRSSCEQFGETSNLESKMEFNLKIALSLLPVMNNEELTTRQLID
FT                 GIEYYSSTLKTEQCKLSLINFVLKSRLSQQAKLSLKSDYPSIDALLTDMRM
FT                 ILLPKKSAIALQNKLQTSRQDQRSINDYGKELTELFMDLSIAQAEGKTENL
FT                 KILQPLNEKQAIKRFADGLRNRRLSTIIAAQKFESLKDAVQAAIDEETITF
FT                 PSQSFDVLTFRKRSNYFQGHHHREANHQPRRNSANNNFSRFTGHRGASFYR
FT                 GRGRGRSSQNYTRGQPRQYRGTYYNSYLRYNNTRGHQKNSQRSDAHIHVLK
FT                 NDEPSTSNSTEEQSKFFRE"
FT   CDS           1834..5592
FT                 /product="Gypsy-10_SpEx-I_2p"
FT                 /translation="KTMNPQHLIQPRSRASFFVNNGFVFASNSNCYVELYV
FT                 DTSAYLFLIDTGATISAIKYKHVIELNIPIHKESIKISGIGGTVEAIGYVY
FT                 LTMSNCYDLGGQTFKQKFYVFNSLPCMAHAILGQDFLMKFNAVLDYGCRSL
FT                 TLNNNDTNVILPLKLYNTRGSYNLTLPPRSESIHYIPTDITEECLVCSSEL
FT                 RTGIFIANLLVKPINGVIPILILNTNETEAYIDTIDPKLQKISEYNLCTFE
FT                 QCRNINADRVRKLFSLLSLKHLNEEEQITIENICAKFADIFLMPGDKLTTT
FT                 NIYKHKISLLPNAQPVFSKPYRIPYSQKPEVNKQISSMLREGIIEPCQSEW
FT                 SSPMLLVPKKADNTGNKNWRLVIDYRKLNNCIQEDKFPLPNITEILDSLSG
FT                 SVYFTTLDLSNGYYQCDLDSDSRKYTAFCSGQFKVSENEGKSTASLSGQYQ
FT                 MTRMPMGLKTSPNAFSKMMTIAMSGLTYEKCLVYLDDLIIFGNSLENHNKN
FT                 LIDVFTRLRQVNLKLNPRKCNFLKKDILYLGHVITSEGVLPDPEKISALSN
FT                 WPVPKNVEELVRFIAFANYYRKFIKNFANIAYPLTKLTKKNASFIWDQDCQ
FT                 TAFSTLKSIISSPPILQYPNFSSNHKFILQTDASKYSLGAVLCNDNRKPIA
FT                 FASRNLNKAEINYPTGEKELLAIVWAVKHFRPYLYGRTFVIETDHKPLIYL
FT                 FGMRDPSSRLLKFRLLLEEYDFIVEYIKGSTNIPADSMSRLPITSTDLKNM
FT                 HESILTVMTRSQYRKVQASQHSPSAMGTTDDWPAQPRVVEIHSKSRMSVEL
FT                 KFIDDDKLNNLRRSNDIDLDSKEFCYSSSKMTLFINPVARSQLTPAAFVRE
FT                 LKCFCEKINVHELIFIRNKIYDEFIKKVVTEIKSYKNWTGPRLCILNDVKI
FT                 IENKDDQKVILNDFHLLPTSGHAGIRRMYNNIKKYYFWSGLERDVKEFIKK
FT                 CDKCQRQKHTSHYVKEPLIVTTTANSAMEKIFLDVVGPLDRDDYNYLYILT
FT                 IQCELSKYVEAYPMKTKSAEEVARNFVNHFILRFGIPTKVATDRGTEFLSS
FT                 VFKETCKLLNITTLNSTAYHHETIGSLENTHKSLGNYLRIQTDNHPNSWSI
FT                 WLPFWCFAYNTSVHTATKFTPFELVFGKKCNIPSNLTKNSVDPLYNCDNYP
FT                 LELKYRLQTSQKEAYENLYESKSARKQKYDLKCNPITYKQNDLVLVKNETG
FT                 NKLQSIYNGPYLVIKDVSPNVEILKDNGKTDLVHKNRTKLYYP"
XX
SQ   Sequence 5847 BP; 2064 A; 983 C; 1038 G; 1762 T; 0 other;
     tggcgaccct gccaggattg gtattgaggt gtcgggtagc catgccggca tacgacgttg        60
     gtggtacaga ctctcatcct aagtgtacgt tgcgttattg aactttcaaa attaatataa       120
     taaaaaccaa taaactttaa aatgtgcaat tctaatactc caaaacgtga agaagtgatt       180
     ataaaccaga atggcattgg agctacgaat gtggctagta ccgaacagct acagtttcat       240
     gtttctgcga tcagcatagt gatgatgata attctgggtt tgttgctgat agtggcagcc       300
     tattttttgt acaaatgcta taaaaactgc catcaccagt ggatcaatga ccaaatccta       360
     cgtcaatacc tgaggaattc gacttatcgg cgtagtcgca gggaaactac agaaagaaaa       420
     cgatgtccag catgctcaag cagtcccgga cagaggcgtt cacctcataa ggaagatctc       480
     ggtgcgtaac ccaaagttcg ataccaagtg cgcgtaaagt gagtgcaaag tgtgcgtaaa       540
     gtgaaatcct aaagcgttga actatgtgtg gtaagcggtt tatattgtac aacctaatta       600
     ttagttacta ttacttacgc tagttgcttc actttcctta aaaatgtcaa ataatggcac       660
     tagagctcaa tgatatatac gaaaagttga gaaaattaaa agagaatttg tttaagttaa       720
     gtttggaaag gaggacacca gaacgtttga aagaaaagtt gaatgaagca actattatat       780
     acaatgatta ttctgtttta cttgtaagca ttagaaagca aatagataat aagacaatta       840
     gtggcgaaag tttatcatta gttaaatctc attgtgacaa aattgtagag ttaaacgccc       900
     aaattcaaga gttttgtagt aagttgcatt tacctgtaac tagaagtagt tgtgagcaat       960
     ttggtgaaac atctaatctt gaatccaaaa tggagtttaa tttaaagata gcgttgagtt      1020
     tgttgccggt catgaataac gaggaattga cgacccgtca acttatagat ggtatcgagt      1080
     attatagctc taccctaaaa accgaacagt gcaaattaag tttaattaac tttgtcttaa      1140
     aaagtcgtct ctctcaacaa gcaaaattaa gccttaagtc tgattatcca tctattgatg      1200
     cattactgac agatatgcgt atgattcttt tacctaaaaa gagtgcgatt gccttgcaaa      1260
     ataaacttca aacttcgcga caagatcaaa ggtcgattaa tgattatggt aaggagttga      1320
     ctgagctatt tatggacttg tctatagcgc aagccgaggg caaaactgaa aacctaaaga      1380
     ttttacaacc tttaaatgaa aaacaagcta ttaaacgttt tgccgacgga ttacgtaata      1440
     gacggctcag tacgataata gctgcacaaa agtttgaatc cctaaaggac gcggtgcaag      1500
     cagctataga cgaagagacc attacatttc cgtctcagtc gttcgatgtt ttaactttta      1560
     ggaagcgtag taattatttt caaggacacc atcatcgtga agccaatcac caacctcgtc      1620
     gcaactccgc gaataacaac tttagcaggt ttaccggtca tcgtggtgcg agtttctacc      1680
     gtggccgtgg ccgtggacgt tcttcccaaa actatacccg aggtcagcca aggcaatatc      1740
     gaggtacgta ctataattct tatcttagat ataataacac cagaggtcat caaaagaaca      1800
     gccaacgttc tgatgctcat attcatgttc taaaaaacga tgaaccctca acatctaatt      1860
     caaccgagga gcagagcaag ttttttcgtg aataatgggt ttgtatttgc aagtaacagt      1920
     aattgttacg tagaattgta cgtagataca tcagcatatt tatttttgat tgacaccggt      1980
     gctacaatta gcgctattaa atataaacat gtaattgaat taaacatacc tatccataaa      2040
     gagagcatta agataagcgg aatcggaggc accgtagaag caatcggata tgtttattta      2100
     accatgagca attgttatga tttaggagga caaacattta agcagaagtt ttatgttttt      2160
     aattctttgc cgtgtatggc acatgctatt ttaggacaag attttctgat gaaattcaat      2220
     gctgtattag attatggctg cagaagttta acattaaata ataatgatac aaatgtaatt      2280
     ttgcctttaa aactatataa tacaagaggt tcttataatt taactttgcc acctaggtcc      2340
     gaatcaattc attacatacc tactgatatt actgaagagt gtcttgtttg ttcgtcagaa      2400
     ttacggacag gaatatttat tgccaacttg ttagttaaac ccataaatgg tgtgatacct      2460
     attttgatcc taaatacaaa cgaaacagag gcttatattg acacaattga tccaaaatta      2520
     cagaaaatta gtgaatataa tttgtgtact tttgaacagt gtagaaatat taacgcagat      2580
     agagttcgaa agttattcag cttgttaagt ttaaaacatt tgaacgagga agagcaaatt      2640
     actatagaaa atatttgtgc gaaatttgcc gacatatttt taatgcccgg tgataagtta      2700
     acaacaacaa atatttacaa acataaaatt agtttactac ctaacgctca accagttttt      2760
     agtaaaccat atagaatacc atactcgcaa aaaccagaag taaacaagca gattagcagc      2820
     atgttacgag aaggtataat tgaaccatgt caatcagaat ggtccagtcc aatgttactg      2880
     gtccctaaaa aggcagataa tacaggcaat aagaattggc gcttagtaat agattacagg      2940
     aaattaaata actgcataca agaggacaag ttccctctcc caaatattac tgaaattcta      3000
     gattcgcttt ctggttctgt atactttact acacttgacc tttctaatgg gtattaccaa      3060
     tgtgaccttg actccgacag tcgaaaatac acagcatttt gttcgggaca gtttaaagtt      3120
     tccgagaacg aagggaaaag tactgcttcc ttatctggac aataccagat gacgagaatg      3180
     ccaatgggct taaaaacgag ccctaatgca ttttcaaaaa tgatgactat cgcaatgtca      3240
     ggattgacat atgagaagtg tctagtatat ctagatgatc ttattatttt tggaaattca      3300
     ttagaaaacc ataacaaaaa cctcatagat gtttttacta gattgcgtca ggtaaattta      3360
     aaattgaatc cccgtaaatg taattttctt aaaaaggata tattatattt aggacacgtt      3420
     ataacgagtg aaggtgttct gcccgatcct gagaaaataa gtgctttaag taactggcca      3480
     gtaccgaaaa atgttgaaga attagttagg tttatcgcgt ttgccaacta ttacagaaag      3540
     tttatcaaaa actttgccaa tatagcttat cctttaacaa aactaacaaa gaaaaacgca      3600
     tcattcatat gggatcaaga ctgtcaaact gctttttcta ctttaaagtc tataatttct      3660
     agccctccca tacttcaata cccaaatttc tctagtaatc ataagttcat tttacaaacc      3720
     gacgcttcta aatattcgtt gggtgcagtt ttatgcaatg acaacagaaa accgatagca      3780
     ttcgcgagta gaaatttaaa taaggccgag attaattatc ccaccgggga aaaagagctg      3840
     ttagcaatag tgtgggcagt aaaacatttc cgtccatatt tgtatggccg tacatttgtt      3900
     attgaaaccg accataaacc tcttatttat ttatttggca tgcgtgaccc atctagtcgt      3960
     ctcttaaaat tcagacttct acttgaagag tacgatttta tcgtagaata tattaaagga      4020
     tcgacaaata ttccagcaga ttcaatgtca cgattaccta tcacatcaac tgacttaaaa      4080
     aatatgcatg aaagtatact cacggttatg acgcgttcac aatataggaa agtgcaagcg      4140
     tcgcaacatt ctccaagtgc tatgggtact actgacgatt ggcctgcgca accaagagtc      4200
     gtggagattc atagtaaatc gaggatgtct gtagaactta aatttataga tgatgataag      4260
     ttaaataacc tacgtaggtc aaatgacata gacttggata gcaaagagtt ttgttattcg      4320
     tcatcaaaaa tgacgttatt tataaatcca gttgcccgat cacaattgac gccagccgca      4380
     tttgtgaggg aactaaaatg tttttgtgaa aaaattaacg tgcacgaatt aatttttata      4440
     agaaataaaa tctacgatga atttattaaa aaagtagtga cagaaataaa gtcatataaa      4500
     aactggaccg gtccgcgatt gtgtatatta aacgatgtaa aaataattga aaacaaggat      4560
     gatcaaaaag taatattaaa tgattttcat cttctaccaa caagtggcca tgctggtata      4620
     agacgaatgt ataataacat caaaaagtat tacttttggt caggccttga aagagatgta      4680
     aaagaattta ttaaaaaatg tgataagtgt caaagacaaa aacatacttc tcattacgtt      4740
     aaagaaccgt taattgttac aacaacagct aattcagcaa tggaaaaaat attcttggac      4800
     gtagtaggac ccttagatcg agatgattac aattatcttt atattttaac tatacaatgt      4860
     gagctgagta agtacgtaga agcttaccct atgaaaacaa aaagtgctga ggaggtagcg      4920
     agaaattttg ttaaccattt tatacttaga tttggtatcc ccactaaagt agctactgat      4980
     agaggcactg aatttttgtc atctgttttc aaagaaacat gtaaacttct caacataaca      5040
     actctaaact ctaccgcata ccatcacgaa accataggtt ctctggaaaa cactcataaa      5100
     agtttgggta attatctaag aattcaaacg gacaaccatc caaattcatg gagtatatgg      5160
     ttgccctttt ggtgctttgc ctataatacc tcagttcaca ccgctactaa atttacgcca      5220
     tttgagcttg tattcggaaa aaaatgcaat ataccatcca atttaactaa aaactcagta      5280
     gatccattgt ataactgtga taattatccc ttggaattaa aatacagatt gcaaacttct      5340
     caaaaagaag cgtatgaaaa tttatatgaa agtaaatcgg caagaaagca aaagtatgat      5400
     ctaaagtgta atcctattac ttataaacaa aacgatttag tactggtaaa aaacgagaca      5460
     ggaaacaaac tccagagtat ttataatgga ccatatttag ttatcaaaga tgtttcacca      5520
     aatgttgaaa tattgaaaga taatgggaaa accgatttag ttcataagaa taggactaag      5580
     ctgtattatc cataatattt ttatacccct atattttttt gtgtttatgt gttttcacat      5640
     aggaacattt tattttgtaa gttatactta tcttgtaatc ttattcatat taaccttata      5700
     ctcttacttt atacttttgt atgtctcaat taacattaat aaactatgaa ctaaaatgta      5760
     aaaaaaaagt tttgtatgtt aatcatgttt aatcataaaa ataaaataat actaacataa      5820
     tattttattt tatccctccg gggaagg                                          5847
//
ID   Gypsy-10_SpEx-LTR repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-132
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4139-4139 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 132 BP; 44 A; 22 C; 15 G; 51 T; 0 other;
     tgtagtgtat acctatagtt ctaagttcgc atatatcaat gtatcttact cgtgtattta        60
     aatatcaatc cttattaata aaagtcagta tttaatcagc agtcaagtgt tttactcaat       120
     acaatcctta ca                                                           132
//
ID   Gypsy-10_SpFr-I repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   26-MAR-2021 (Rel. 26.04, Created)
DT   26-MAR-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SpFr-I.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4146
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1880-1880 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~88% identical to
CC   that of Gypsy-6_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..951
FT                 /product="Gypsy-10_SpFr-I_1p"
FT                 /translation="MATSEEFCDAHGVTTVKSDVATISLPARLPQFWRQNP
FT                 RLWFAQFEAAVAASKIGEEQKFNLVVPLLGNSDLEQIADIILNPPATGKYS
FT                 SLKERLISTYQESDHRQLQKLLSGLELGDQKPSQLLRKMRDLSGKLLSDEA
FT                 LKVMWLNQLPTQVRAVISVNTESSLEMLAAMADKMMEHFEPTSINAVSTTT
FT                 TACQENLQFALLSKQIEKLSLEIAELRTNQQSAGNYRRYSRFPHRNRSRSQ
FT                 SRSRQRGQSNIKPGDPNWLCRYHYRFGDEARKCEPPCAKKREN"
FT   CDS           852..4133
FT                 /product="Gypsy-10_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="HQAWRPELVVSLPLPIRRRSTQMRTTVCKEAGKLEST
FT                 STLAGVDVNQTSRRLCIIDTNLREKFLIDTGADISVLSARNKKHSKPAKTA
FT                 YKLFAANGTEIRTYGERTLELNLGLRRRFRWTFVVADVNTSILGADFLVHH
FT                 KLLVDLHRRKLIDRVTELSVNTIKINSSEQETVYTVNRDHAYHDLLKKYPD
FT                 VLRPMSLKTPVKHNVTHHIETTGPPIYSRARPLPPDRYKAAKLEFEHMMEM
FT                 GICKPSNSPWASPLHVVKKKDGSLRVCGDYRRLNAVTVPDRYPIPRIQDFT
FT                 YQLHGKKIFSKLDLKMAYFWIPIAKEDAQKTAIITPFGLFEFNCMTFGLRN
FT                 SGQTFQRFMHEVLRGLDDIVFCYIDDLLVHSRNQDEHRRHIEIVLERLNTY
FT                 GVSLNIDKCEFDKQNVEFLGYEVSPEGIKPTQERIQAIVNYPKPQTVQDLR
FT                 RFLGMINFYRSCLPHQAEYQHELNKYLHNTKKKDKTPIPWTTEAEQAFEKC
FT                 RQSILDATTLTHPIHNAPLRLYTDASNSSIGAVLQQQVDNVWKPLAFFSKT
FT                 MSETQRRYSVYDRELLAMYTAVKHLRRLIEGNDLTIFTDHKPLTYALTRSP
FT                 STSDTSRRERQLHFISQFCSNIKYVHGDNNEAADALSRIEEIDLSETSIDY
FT                 NQLAIDQENDSELQICMSRPNLQFTSISLPGGQRPIICETSTGNIRPYLPA
FT                 KYRFAAFKAQHELSHPGVRTTRKIMSTKFFWSNMNKEVGTWAKTCIGCQRG
FT                 KVQRHTISPLGEFEKSQRFEHIHVDIVGPLPPSNDYRYLVTMIDRCTKWPE
FT                 AIPVRDITADTIAKAIFDGWISRFGCPLRITTDQGRQFESSLFNSLMKKCG
FT                 IKRIRTTAFHPQANGQIERWHRTLKSALMARCARTNWSDELSTVLLGLRTA
FT                 LRQDKEVSAALMTYGSTLRVPSDFFVPTQPNIDDAEFVRQLTETMSTLSTN
FT                 NKPHSNSVRTFVHKDLTTCTHVFVRNDTVRSPLVPPYDGPYKVIQRDGKNF
FT                 TLQMPNRTTVVSIDRIKPAYLLNEDKLAYLHNEEEHKTSTSSNTSSATSTS
FT                 TTHTSNDARTPLPAPAPPREAYVTRTGRTVKPNVRFA"
XX
SQ   Sequence 4146 BP; 1319 A; 1166 C; 861 G; 800 T; 0 other;
     ctggtgaccc tcctgagaag aaagaacact agaacagaag gaaaaggaaa ataataatat        60
     caagacgtcg aatccctgcc agtctgaaga aagaaaatta tggctaccag cgaagaattc       120
     tgtgacgccc acggcgtgac cacagtgaag agcgacgtgg cgacgatatc cctgcccgca       180
     agattgccac aattttggcg gcaaaatccc cgcctctggt ttgcgcaatt cgaggcagcc       240
     gtcgccgcca gcaagatagg agaggagcag aaattcaacc tcgtcgtacc actgctcggc       300
     aacagtgacc tagaacagat cgccgacatc atcttgaacc ccccagctac cggcaaatac       360
     agcagtctga aagaacggct aatctccacg tatcaagaat ccgaccatcg ccagctacag       420
     aagctactca gtggcctcga gctcggcgac cagaagccca gtcaactact ccgcaagatg       480
     cgcgacctca gcggcaaact cctgtccgac gaagctctca aagtaatgtg gttgaatcaa       540
     cttcctacac aagtacgcgc cgtaatctcc gtaaacaccg agtcgtcact tgaaatgcta       600
     gccgccatgg ctgacaaaat gatggagcac ttcgagccta cttccatcaa cgcagtctca       660
     acaaccacaa cagcgtgtca agaaaactta caattcgcct tactatcgaa acaaatagag       720
     aaactttccc tggaaatcgc cgaactccgt acgaatcagc aaagcgcggg aaactaccgc       780
     cgctactcgc gcttcccaca tcgcaatcgc tcacgctcgc aatcacgatc cagacagcgt       840
     gggcagagta acatcaagcc tggcgacccg aattggttgt gtcgctacca ctaccgattc       900
     ggcgacgaag cacgcaaatg cgaaccaccg tgtgcaaaga agcgggaaaa ctagaaagta       960
     catctacgtt ggcgggcgtc gatgtaaacc aaacaagccg ccgactctgt attatcgaca      1020
     ctaacttacg agagaagttt cttatcgaca cgggagccga catatctgtc ctatctgcaa      1080
     gaaacaagaa acattcgaag ccggcgaaga cagcatacaa actatttgca gcaaacggca      1140
     ccgaaattcg cacctacgga gagcgcacac tcgagctcaa cctaggtctg cgaagaagat      1200
     tcagatggac tttcgtcgta gccgacgtca acacatcgat actaggcgca gacttcctag      1260
     tacatcacaa actactagtc gacttacatc gaagaaaact catcgaccgc gtcaccgaac      1320
     tcagtgtaaa cacaatcaag atcaacagct ccgaacaaga aaccgtctac acagttaacc      1380
     gtgatcacgc ctatcacgac ctactaaaga aatatccaga cgttctgcga cctatgtcat      1440
     tgaaaactcc agtgaaacat aacgtcacgc accacatcga gacaacagga ccacctatat      1500
     actcacgtgc gcgacctcta ccgcccgaca gatacaaagc agcgaaactc gagttcgaac      1560
     acatgatgga gatgggtatt tgcaagccgt caaacagtcc ttgggcgagt ccactgcacg      1620
     tcgtcaagaa gaaagatggt tcacttcgag tctgcggcga ctacagaaga ctaaacgccg      1680
     ttacagtacc cgatcgatac cctataccac gtatccagga tttcacctac caactccacg      1740
     gcaagaagat attttcaaaa ctcgatctca agatggcata cttctggata cctatcgcta      1800
     aagaagacgc acagaaaact gcaataatca ctccatttgg tctcttcgag ttcaactgca      1860
     tgacattcgg cctaagaaac tccggacaaa cgtttcaaag attcatgcac gaagtgttac      1920
     gaggactcga cgacatcgtg ttttgttaca tcgacgatct acttgtgcac tcgaggaatc      1980
     aagacgaaca tcgacgtcac atcgaaatag tactcgaacg cctaaatacc tacggcgtca      2040
     gtctaaacat cgataagtgc gagttcgata aacaaaacgt cgagtttctc gggtacgaag      2100
     tgtcaccgga aggaatcaaa cctactcaag aacgaattca agccatagtt aactacccaa      2160
     aaccacaaac agttcaagac ctaagaagat ttctcggcat gattaacttt taccgcagct      2220
     gcttacccca tcaagccgaa tatcaacatg aactaaacaa atatttacat aatactaaga      2280
     agaaagataa gactccgata ccgtggacca cagaagcaga gcaagccttc gagaaatgcc      2340
     gacaaagcat tctcgacgct acgacgctca cgcacccaat acataacgcg ccgctacgct      2400
     tatataccga cgcatcgaac tcaagcatcg gcgccgtact tcaacaacaa gtggacaacg      2460
     tgtggaaacc gctagcattt ttctcgaaga caatgagtga aacacagcga cgttacagtg      2520
     tatatgatcg cgaattatta gcaatgtaca ctgccgtcaa acatctccgt cgactaatag      2580
     agggcaacga cctaacaata ttcacagacc acaaacctct tacttatgca ctaacaagat      2640
     cacctagtac cagcgacaca tcacgaagag aacgccaact tcacttcatc agccagtttt      2700
     gttcgaacat taagtacgtg cacggtgata acaacgaagc ggccgacgcc ttatcacgca      2760
     ttgaagaaat cgacctatca gaaacttcaa tcgactacaa tcaactcgca atagaccaag      2820
     aaaacgactc agaactacag atttgcatgt caagacctaa cctacagttc acaagtattt      2880
     cactacccgg aggtcaacga ccgattatct gcgaaacatc aacaggcaac atacgtccgt      2940
     atttacccgc gaaatatcgt tttgctgcat tcaaagcgca acacgagctc agtcacccag      3000
     gcgtacgtac tacgaggaag ataatgtcaa cgaagttctt ctggtcgaac atgaacaaag      3060
     aagtcggaac atgggcgaag acatgcatcg gttgtcagcg tggaaaagta cagcggcaca      3120
     ctatcagtcc tctcggcgag ttcgaaaaat cacaacgttt cgagcacata cacgttgaca      3180
     tcgtgggacc gctgccgccg tcgaatgact accggtacct agtaacgatg atcgaccgct      3240
     gcactaaatg gcctgaggcg ataccagtcc gagatatcac cgcggacacg atcgccaaag      3300
     ccatcttcga cgggtggatt tcaagatttg gttgcccact acgcatcacg acggaccaag      3360
     gcagacagtt cgaatcgtca ctgttcaatt cactaatgaa gaaatgcgga ataaaaagaa      3420
     tacgaactac agccttccac ccgcaagcca acggacaaat cgagcgctgg caccgcactt      3480
     tgaagtcggc actcatggcg agatgcgcgc gcacaaactg gagcgacgag ttatcaacgg      3540
     tgttactagg attacgtaca gcacttcgtc aagacaagga agtcagcgcg gcactcatga      3600
     cctacggttc tacgcttcgt gtaccatcgg atttcttcgt gcctacacag ccgaacattg      3660
     acgatgccga attcgtccgt cagctgaccg aaacaatgtc tacgttatcc acgaacaaca      3720
     aaccacactc aaactccgta cgcacattcg tacacaaaga tctaaccacg tgtacacacg      3780
     tctttgtgcg caatgacacc gtgcgcagcc cgcttgtacc tccctacgat ggcccctaca      3840
     aggtgattca acgcgacggg aagaatttta ccctacagat gcctaatcga actacagtcg      3900
     tctcaataga cagaataaaa ccggcatact tactcaacga agataaactg gcatacttac      3960
     acaacgaaga agaacacaaa acctcaactt catcaaatac gtcgagcgct acaagtactt      4020
     caactacaca cacaagcaac gacgcgcgga cgccgctacc cgcccccgcc ccaccgcgcg      4080
     aagcctacgt cacccgcacc ggccgaacag tgaaaccaaa tgtacgcttc gcttaggggg      4140
     gagtga                                                                 4146
//
ID   Gypsy-10_SpFr-LTR repbase;    DNA;    INV; 1052 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-1052
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1864-1864 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1052 BP; 303 A; 227 C; 252 G; 268 T; 2 other;
     tatagcgaca tgttacatta ccgatttacc ttcgtcaaaa ccagattacc aataccgtac        60
     ctccgtgcaa aaccagttta cctttaccat acctcagtga agaaccaaac aattaccttt       120
     gttttgactt tctmtgttaw ggagaaacag tgaagcaaat cgtcttgaaa aagacgtttg       180
     gatattgtgt ttttgactat ctctgttatg aagaaacagt gaagcaaatc gtcttgaaaa       240
     agacgtttgg atattgtgtt tttgactatc tctgttatca agaaacagtg aagcaagtcg       300
     ccttgaaaaa gacgtttgga tacgttgcgt ttttgactct ttctgttatc aagaaacgag       360
     gaagcaattc gccttgaaaa agacgtttgt ttacgttttt gacttctgca cagaaacacg       420
     tcttgagaaa gacggttgtt aacgtttttg acttccgcac agaaacacgt cttgagaaag       480
     acggttgttc acgtttttga ccactgcaca gaaacacgtc ttgagaaaga cggttgttta       540
     cgtttttgac ttctgtacag aaacgcgtct tgaaaaagac gtttgtataa gtttctattg       600
     acggctgttg gaaccaagac atgcagaagc acggcatggc acaagcgaca cacaacacac       660
     gcagcaagca agcagaagct gagcacgagg aacacggagt cacgaagaca cggcgatcag       720
     cgagatagca cgagcggaga gacgtctgca cacgtcgacg gcaccggagc gaaagggacg       780
     cggcgcgggg agcgcgcctt tttaaagcgg cggcgcggcc acgcgacgcg agcgagcggc       840
     ggcgccctct cgcggacgcg atgtcaaact cgcgcgatcg gtcctgcgct gctattggtc       900
     ggttgcaaaa agcatttcgg tgtgtactta gtatgtaagt gtgctacggt agctgtattt       960
     attagtaggg ccatttggca aataaattca ttccgaaaaa cgacttcaag agttttattt      1020
     caacaagaag aaacctgctc tctccctcaa aa                                    1052
//
ID   Gypsy-10_TCa-I repbase;    DNA;    INV; 5085 BP.
XX
AC   singleUn_1004;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_TCa_;
KW   Gypsy-10_TCa-LTR; Gypsy-10_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5085
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; singleUn_1004; Positions   12014    6930.
XX
CC   Positions [2260-2685] - Reverse transcriptase
CC   Positions [3838-4311] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..4674
FT                 /product="Gypsy-10_TCa-I_1p"
FT                 /translation="MSEEQRGDEEGITLTMDEDIDLEEAAPRTISATTQVT
FT                 SETLDNPIARTLEQLLGSELKSQIEKAVKRQAALILGEITDTQAAGTEGAE
FT                 VTLRNRIAEMGASAQQSPATGSDCSTVRSWKIGAEIVDYFDPDDADCNIER
FT                 WLAKIDQLGQVHGWSELEKAGIMQSRLMGAAKAWFNHLGEYNLTWDSWKAR
FT                 LRMAFPRRQDFAITLEELVQRQKLPGEVMTKYYHEKLALCDRVGISGENAV
FT                 AVIIRGLPKELRANAYATRSTTPEALYNNFLVGLEFYEYRGATAKAERVTR
FT                 RESTSSGQAMKRRSDQPVATTKAKSALIRCFNCQRYGTHKSRECPYERRER
FT                 CRKCGRPGHEASTCNPQADSTAVKGANPQVRILQLGLENTYKKMGTACGAQ
FT                 IRVYIDTGSEHNILAWSWAQGRNLNIKPGEWILQGFAGGQGVAIGEATFDI
FT                 KVDEVTLSITALITKCDLGRIELILGQPAISTSGVALVVRGDKACVIRDED
FT                 LFEVFKNLTLETDRPRPRILVKEDTVIPAGLSLQMGVTITDCEIGEIVSMA
FT                 PVTFQSKDDMVAIPGGVLKCRDDNKILFTNLAPRTLVWKAGRLVTKAERCK
FT                 EGVPVTKVMNIQQVSACFDLSSVTVGEIGDYYKQQLFDLLRSMSCCFSAND
FT                 EDLGLTQLGSMSINLTSDIPVYYRPYRLSHSERAVVRQKVQSLLDGDVIRE
FT                 SNSNYASPILLVPKKTGEMRLCIDYRALNAITVKDRYPLPLIADQLDRLAG
FT                 NRYFTSLDLAQGYHQVPMHSDSIHKTAFVTPDGHYEYLRVPFGLANSPAVF
FT                 QRIINQMLGNMRHDQVLAYMDDLLIPSVDVATGLELLRKVLELIRDAGVKL
FT                 KLAKCSFLQEKIDYLGHEISVEGIRPGQRKVDAVLKFPEPSDVHSVRQFMG
FT                 LASYFRKFIRNFALLAKPLTNLTKKDVEWRWGEEQQDAFQRLRHLLSERPV
FT                 LAAYNSSFSTELHTDASKIGVGGILLQRQPDGELKPVFYFSRTTTPQEQVY
FT                 HSYELETLAVVESIKRFRVYLLGTQFKVVTDCSAVRATFLKKDLVPRIARW
FT                 WLAIQEYGMTVEYRPGVRMQHVDALSRNPVQISIVHADEADWFLTVQLQDP
FT                 KAQELVTVLTTGVTPRDVKAVYKVKNGRLYRITPNGDRLYVPATARFTLAH
FT                 KHHDEIGHPGYNRALTLMKETYWFPKMARFMLKYVGSCLRCAYGKGDYGKA
FT                 EGRLHPIKRLPIPLDTVHVDHLGPFMRSSKGNSYLLMAIDGFTKFVWAKPT
FT                 RTLRSTEAIEKLRDIFGVFGYPRRVITDRGLAFQSKAFGDFMAEKGIQHIQ
FT                 NAIATPRANGQVERPNRTIEEALTCSADSENRWDDGLPEIVWGLNNTVNAS
FT                 TRFSPAQLMFSHRRGVIANLADNVVQATLNSIENGETGANLVKHGEAVPHG
FT                 EASTTPGTGCSANAQGGAGLSQHAGPSSDDSGYPVLAEALSEELQANRAEA
FT                 ERNLKRTALQMKSRFDKRRKVATLYKVDDLVL"
XX
SQ   Sequence 5085 BP; 1458 A; 986 C; 1444 G; 1197 T; 0 other;
     aatcagaagt gggattattt cacgtgctag ttggtgaaat ttgagtggcg taattgaaag        60
     tgcggcgaaa ttagcttcaa ggacttgctc gggtgaaaaa cgtcagcgca aaaacggcga       120
     taagaaaagt cgactgttac tttgggtgtg gcaagacgaa tttcggcgaa aagtgttcta       180
     aaaatgtctg aggagcaaag aggcgacgaa gagggaatta ctttgacgat ggacgaagac       240
     atcgacttgg aggaggcggc cccaaggacg atttcggcga caacccaggt gacgtcagag       300
     accttggata acccaattgc gcgtaccctg gagcaattat tgggatcgga gttaaaatcc       360
     caaatcgaaa aggcggtaaa aaggcaggcg gcactaattt taggcgaaat tactgatacc       420
     caggcggcgg gtacagaggg ggcggaggta accttacgca ataggatagc tgagatgggc       480
     gcgtcggcac agcaatcgcc ggcgacaggc tctgattgtt ctacagtgcg gagctggaaa       540
     attggagccg aaattgtcga ctattttgac ccagatgatg ctgattgcaa tatcgagagg       600
     tggctcgcaa aaattgacca gctggggcaa gttcacgggt ggtcagaatt ggaaaaggcg       660
     ggcattatgc aatcacgatt gatgggggcg gcgaaagcat ggtttaatca tttaggcgaa       720
     tacaatttga cctgggattc ttggaaggcg agactccgaa tggcgtttcc tcggcgacag       780
     gactttgcca ttactctcga agaattagta cagcgtcaaa agttaccagg cgaggtaatg       840
     acgaagtact atcacgagaa gttggcgcta tgtgacagag tcggcatttc tggcgagaat       900
     gctgtcgctg tgatcataag ggggctgcca aaggagcttc gtgcaaatgc atacgcgact       960
     agaagtacca ccccagaggc gctgtataac aactttcttg tgggactgga gttttatgaa      1020
     tatcgtgggg cgacggcaaa ggctgaacgg gtgacacggc gtgagtcaac ctcctccggc      1080
     caggcgatga aacggcgatc ggaccaacca gtggcaacaa caaaggcgaa gtccgcatta      1140
     attcgctgtt tcaactgtca gcgatacggt acccacaaga gtcgagagtg tccttacgag      1200
     aggagggaga gatgtcgaaa atgtgggaga ccaggacatg aggcgtcaac ctgtaacccc      1260
     caagcagact ccacggcggt gaaaggcgcg aacccacagg tgagaatttt acaattaggg      1320
     ctagagaaca cttataaaaa gatgggtacg gcatgcggcg cgcaaattcg tgtttatatt      1380
     gacaccggga gtgagcacaa cattttggcg tggtcttggg cgcaagggcg taatttaaac      1440
     ataaaaccag gcgaatggat actacagggg tttgcaggcg ggcaaggtgt agcgattggc      1500
     gaggcgacat ttgacattaa ggttgatgag gtaacattga gtatcacggc gttgataacc      1560
     aagtgtgatc tcgggcgaat cgagctcatc ttgggtcaac cagcaattag tacctccggc      1620
     gtagcacttg tagtgagagg cgataaagca tgcgttatca gggacgaaga tcttttcgaa      1680
     gtttttaaga acttaacctt ggagacggac cgaccaaggc cacgaatcct cgtgaaggag      1740
     gatacagtta tcccggcggg gctgtcactc caaatgggcg ttacaataac tgattgtgaa      1800
     ataggcgaaa tagtttcaat ggctcctgtg acgtttcaaa gcaaggacga catggtggcg      1860
     atacccggtg gcgtgttaaa atgccgagac gacaacaaaa tcctcttcac aaatcttgca      1920
     cccagaacac tggtttggaa ggctggacga ttagtgacaa aggcggagag gtgcaaagaa      1980
     ggagttccgg tgacaaaagt catgaacatt cagcaggtga gcgcatgttt tgacttatct      2040
     agtgtcactg taggcgaaat aggtgattat tataaacaac agctatttga cttattgcgt      2100
     tctatgtcgt gttgtttttc ggcgaatgat gaggatctag gtttaactca gttagggtcc      2160
     atgtcgataa atctaacgtc agacattcct gtgtattatc gtccatacag attgtcacat      2220
     tcagaacgag cggtggttcg acaaaaggtg cagagtctgc ttgacggcga tgtcatcaga      2280
     gaatctaatt caaactatgc gagtcctatt ttgttggtcc ctaagaaaac aggcgaaatg      2340
     cgtctctgta ttgattatag ggcactaaat gcaattacgg tgaaagatag gtaccctttg      2400
     ccactgattg cggatcagtt ggatcggttg gcgggaaacc gatactttac atccttggac      2460
     ttggcgcaag gatatcatca ggtaccaatg cattctgatt caattcacaa aacggctttt      2520
     gtaacacctg atggacatta tgaatacttg cgagttccat ttgggttggc aaattctccg      2580
     gcggtatttc agagaattat caaccaaatg ttgggcaaca tgcgacatga tcaggtcttg      2640
     gcgtacatgg atgatcttct gataccttca gtagatgtag cgacggggtt agagctactt      2700
     cgaaaggtgt tggaactaat tagagatgca ggcgtgaaat tgaaattggc gaaatgcagt      2760
     ttccttcaag agaagatcga ttatttaggc catgagatca gcgttgaagg gatacgacct      2820
     ggtcaacgca aagtggatgc agttctaaag ttcccagaac cctcagacgt acatagtgtt      2880
     agacagttta tgggtttagc tagttacttc agaaaattca ttcggaattt tgccctgttg      2940
     gcgaaacctt tgacaaatct cacgaaaaag gacgtggagt ggcgatgggg agaagagcag      3000
     caggacgctt tccagagact tcgtcacttg ttgtctgaga gaccggtttt ggcagcttac      3060
     aacagcagtt tttcgacaga gttgcataca gatgcaagca aaattggcgt gggaggaatt      3120
     ctgctacaga gacaaccaga tggtgagcta aagccagttt tctacttcag tagaactacc      3180
     acacctcagg agcaggtata tcatagctat gagttagaaa ccttggcggt ggtagagtca      3240
     attaaacgtt ttcgggtgta tttgctgggt acacaattta aagttgtaac tgattgttca      3300
     gcggtaagag caactttctt aaagaaagac ttggtccctc gaatagctcg gtggtggcta      3360
     gcaatccaag agtatggcat gacagtagaa tataggccgg gcgtacggat gcagcacgtt      3420
     gatgctttaa gtcgaaatcc tgttcagatt tctatcgttc atgcagatga ggcggattgg      3480
     tttcttacag ttcaattaca agatcccaaa gcgcaggagc tggtcactgt attgacaacc      3540
     ggcgtaacac cgcgagatgt aaaggcggtg tacaaagtga aaaatgggcg tctgtataga      3600
     ataacaccaa acggcgacag actttatgtg ccagccacgg cgaggtttac tttggctcac      3660
     aaacaccacg atgaaatagg gcatcctggt tacaataggg cgttaacatt gatgaaagaa      3720
     acatattggt ttcctaaaat ggcgcgattc atgttgaaat atgtaggatc ctgtttgcga      3780
     tgtgcctatg gcaaaggtga ttatggtaag gcggaagggc gactgcatcc aataaaaagg      3840
     ttacccattc ctttggatac agtacatgta gatcatttag gtcctttcat gagaagtagc      3900
     aagggcaaca gttacttgct aatggcgata gacggattta caaaatttgt ctgggcgaaa      3960
     ccaactcgaa cactgagatc tacagaggcg attgaaaaat tgagagatat ttttggggtg      4020
     tttgggtatc cgcgaagggt aatcacagat cgtggattgg cgtttcagag caaggcgttt      4080
     ggtgatttca tggcggaaaa agggattcag catattcaaa atgcgattgc tacccctagg      4140
     gcgaatggtc aggttgaaag acccaaccga accattgaag aggcgttgac gtgcagtgca      4200
     gattccgaaa atcggtggga cgatgggtta ccggagatag tttggggttt gaacaataca      4260
     gttaatgcga gtactcgatt ttctccggcc cagttgatgt tctcccacag gcggggcgtt      4320
     atagctaatt tggcggataa tgtggtacag gcgacattaa attcgatcga aaacggcgaa      4380
     accggcgcga acctagtaaa acacggcgag gcggtaccac acggcgaggc gagcacaaca      4440
     cctggtaccg ggtgcagtgc gaatgctcag ggcggagcag ggcttagtca gcatgcggga      4500
     ccttcgagtg acgactcggg gtacccagtt cttgctgaag cactcagtga agagctacag      4560
     gcaaataggg ccgaggcgga aaggaatctg aaaaggactg cactacaaat gaaatctagg      4620
     ttcgataaaa ggcgaaaggt tgcaaccctg tataaagtag acgatttggt cttgtgacgt      4680
     cagtcggcga ctggttgttt ggatccaggt actaatagaa agttggcgaa taagtacgac      4740
     ggaccatata gagtgtcacg tcggcttggt aacgacaggt accagatcga ggcgattaaa      4800
     ggtatgagag ggtacaaacg ttttaaggcg gttgtggcgg tggattcact ccggcgctat      4860
     tgcagtactg ctcaggaggc gaatgacaag gcggatggcg aggaaagcga cagtggcgag      4920
     gaaattgatc ggttagatct gatcgatctc ctcgagaatt aggctacgaa ttaatgagga      4980
     cattaatttt gcaggaaggc cgaatgttac gaccaaaatc agccaggcgc tgattaagga      5040
     cacggcggga atcgaggcgg cgcgatagac acaacaacca ggcga                      5085
//
ID   Gypsy-10_TCa-LTR repbase;    DNA;    INV; 123 BP.
XX
AC   singleUn_1004;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_TCa_;
KW   Gypsy-10_TCa-I; Gypsy-10_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-123
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; singleUn_1004; Positions    6929    6807.
XX
SQ   Sequence 123 BP; 35 A; 21 C; 30 G; 37 T; 0 other;
     tgagcggtga gacggcgcgg cagcagtgtc gaatcaacgg cgacacggtg gttgtgtgct        60
     tttactttgt atttaaaact ttttcttgaa aataaagtta aacttcgaaa aagtcttcta       120
     aca                                                                     123
//
ID   Gypsy-10_TrNi-I repbase;    DNA;    INV; 4446 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4446
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 203-203 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..4105
FT                 /product="Gypsy-10_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTKPIKEEPHTGLSSTLYLTTELIPKFTGQDKTYSV
FT                 SRWIQDVEENGEICGWTPLQQLLMARRSLAGTAQLWIQAERPHKTWEELKT
FT                 ALSKEFPDTVDIKTIHELMSQRKKRRDESCIDYMMVMKELGKRGKFPDYVA
FT                 IKYIVDGIVDHETHKIMLYGVTTYPDLKEKLKIYENIKEKLKLEHRSAFRS
FT                 EKRSIIQQKSKKCYNCGDGNHLSGDCPQKTQGPKCFHCNEYGHISPMCPHR
FT                 KNMAVGGRKEDMSTNSNSSKWRTFGDRRNNHGGGGASASGSGERVNKQAMF
FT                 GHNEEVEMSNSKMTGDSQDSKCQIEYDIYDVNKQSLQEKPLKIVELCGKEA
FT                 SALIDSGSDVNLVSSEFCANVSKSTNNSITLTGLGLAKVKSVGCITTNVVI
FT                 DGANYDDVLFYVVPKDCMPFDVIIGHEFLKNVVTVMKGCDVWMKPVEWVSK
FT                 IHCFSCSVDVGHVTNTNLKEEVVQMVENYQPNQIKEAPIQLKIIVKDDVPV
FT                 VQRPRRISLKEQAVVEEQVSEWLEQGIVRVSYSEYASPLVLVRKKDGAIRV
FT                 CVDYRKLNSKIVKDEFPLPIIEDYIDKLAEAKVFSVLDLKNGFFHLNVSSE
FT                 SIKYTAFVTHHGQFEFLKAPFGLSVSPNYFMRFVTIIFRELISKGVVLIFV
FT                 DDILVPAKDEQEAVDSLREVLRVASEYGLQINWKKAHLICRSITYLGHTIE
FT                 NGQVRPASDKIDAVTKFPEPKTVKQLQSFIGLASYFRKYIQNFASIARPLT
FT                 DLLKKDVNFEFNDNQRRAFNCLKECLTTKPVLRIFNPRFETEMHTDASRLA
FT                 YAAILMQRSDDDGGLHPVYYMSRKTSEAEKKYTSYELESLAIIEGVKKFRH
FT                 YLYGLKFKIVTDCQAFQMTLKKKDLCTRVARWALLLQEFDFVVEHRPGTRM
FT                 KHTDALSRNPYVAVVTLHDEIRQAQQTDDGIKAILEILQERSYGDYYIDNG
FT                 LLYKGVEKHLVIPKSMENEIIRRAHANGHFSKKKMTELISKDYFIKNLDKK
FT                 IEDFITSCIPCLLATRKEGKQEGFLQPIEKEESPLHTLHLDHIGPMTETKK
FT                 QYNHILTIVDAFTKFTWIFPTKSTTSKETIEKLKIHQQHFGNPTRFITDRG
FT                 TAYTSNEFQEYCKDENIQHIKITTGIPRGNGQVERVHRTIISVLTKLCIEN
FT                 PSLWYRHVSRLQRALNSTFQRSINSTPYQLLIGTKMRMKEDIEIYDLLLEE
FT                 GRESYSEEREKLREKAKEQILQVQEENIRNFNRKRKESMKYKEGDLVAIKR
FT                 TQFGTGMKIKAKYLGPYKVIKVKRNDRYEVKKLDPNTEGPGATSSSADCMK
FT                 LWPDVNPKT"
XX
SQ   Sequence 4446 BP; 1556 A; 732 C; 985 G; 1173 T; 0 other;
     aaattggggg ctcgtccggg attggcaata attacgacga acgacgacgg ataccggcac        60
     gtggcgaacg gcggccgacg attcaaacct catctacgac ttttatgacg gttaaggcga       120
     aggagggctg aagcaagcta agatgactac gaagccgata aaagaggaac cacatacggg       180
     attaagctcg acgttgtatc ttaccacgga acttatacct aaattcaccg gtcaagacaa       240
     aacctattca gtgtctcgat ggatacaaga cgtcgaagag aatggtgaaa tatgcggatg       300
     gacaccgctt caacagctac tgatggcacg gagatctcta gcaggcaccg cacaactctg       360
     gatacaagct gaacgccctc acaaaacatg ggaggaactc aagacggccc tgagtaagga       420
     atttcccgac accgtcgaca tcaagaccat acacgaactc atgagtcagc gaaagaaaag       480
     acgtgacgag agttgcatcg actatatgat ggtcatgaag gaattaggaa agcgaggaaa       540
     atttcctgat tacgtggcta taaaatacat tgttgacggc attgtcgacc atgagacaca       600
     taaaataatg ctgtacggag taacaacgta tccagaccta aaagagaagc tcaaaatcta       660
     cgaaaacatt aaagaaaaac tgaagttgga acatagaagt gcctttagaa gtgaaaagcg       720
     cagtatcatt cagcaaaagt ctaagaaatg ttataattgt ggcgatggca atcatttatc       780
     aggagactgt ccgcagaaga cacaaggtcc aaaatgcttt cactgcaacg aatatggtca       840
     tatttcaccg atgtgcccgc atagaaaaaa catggcggtg ggcggccgca aggaagatat       900
     gagtacaaat tcaaattcat caaaatggcg cacttttggc gatagaagaa ataatcatgg       960
     cggcggcggc gcatcggcaa gtggaagtgg tgaacgagtg aacaaacaag caatgttcgg      1020
     tcacaacgag gaagtagaaa tgtcaaactc aaagatgaca ggtgacagcc aagacagcaa      1080
     atgtcaaatt gaatatgaca tctacgatgt aaacaaacag tcgctacaag aaaaacctct      1140
     gaaaatagtc gaattatgtg gaaaagaggc aagtgcgctt atagattcgg gcagtgacgt      1200
     gaatttagtg tcctcggaat tttgtgctaa cgtttctaaa tccacgaaca atagtataac      1260
     gctcactgga ctcggtctcg ctaaagtgaa gtcggtaggt tgtataacaa caaatgtggt      1320
     tattgacggt gcgaactacg acgatgtgtt attctacgtt gtgcctaaag actgtatgcc      1380
     ttttgatgta atcataggtc acgaatttct taaaaatgtt gtaacagtta tgaaaggttg      1440
     tgatgtgtgg atgaaacctg tggaatgggt gagcaaaatt cattgtttca gttgcagtgt      1500
     tgatgttggt catgtaacta acactaacct aaaagaagaa gttgtccaaa tggttgagaa      1560
     ctatcaacca aatcaaatta aagaagctcc tatccagctg aaaataattg tgaaagatga      1620
     tgtacctgta gtgcagcgcc cacgacgcat atccttaaag gagcaagcag tagttgagga      1680
     gcaagtgtcg gagtggcttg agcaaggcat tgtaagagta agttattctg aatatgccag      1740
     tcccttagtt cttgttcgca aaaaagatgg tgctataagg gtgtgtgtag actatagaaa      1800
     attaaatagt aaaattgtaa aggatgagtt ccccttacct attattgagg attatattga      1860
     caagttggct gaggcaaaag tatttagtgt attggattta aaaaatggtt ttttccattt      1920
     gaatgtcagt agtgagtcaa tcaagtacac tgcatttgtt acacaccacg ggcagtttga      1980
     gttcctgaag gctccatttg gcttatctgt ttccccgaac tatttcatga gatttgtgac      2040
     cataatcttc agagaattga tatccaaagg tgttgtacta atattcgtcg acgatatcct      2100
     tgttccagct aaagacgaac aggaagcagt ggacagctta agagaagttt taagggtagc      2160
     atctgagtat ggcttacaaa taaattggaa gaaagcacat cttatatgtc ggagcataac      2220
     ttatttaggc catacaattg agaatggaca agtaaggcct gccagtgaca agattgacgc      2280
     tgttacaaaa tttccagaac caaaaacagt taagcaattg caaagtttta tagggttagc      2340
     atcatatttc cggaagtata tacagaattt tgcatctata gcacgaccac ttacagattt      2400
     attaaagaaa gatgttaatt ttgagtttaa tgataaccaa cgacgtgcgt tcaactgttt      2460
     gaaggaatgt ctgactacca aaccagtttt aaggatattc aatccaagat ttgaaacaga      2520
     aatgcataca gatgcctcac gtttggctta tgccgctatt cttatgcagc gttctgacga      2580
     tgatggtgga ctacatccag tgtactatat gagccgtaaa acaagcgaag cagaaaagaa      2640
     gtacaccagt tatgaattgg aaagtctggc cattatagaa ggcgtgaaaa aatttagaca      2700
     ttacttgtat ggtttgaaat ttaaaattgt aaccgattgc caagcatttc agatgacact      2760
     taagaaaaaa gatttgtgta caagagtcgc aagatgggca ttacttctac aggagtttga      2820
     ctttgtagtt gaacatcggc cgggaactag gatgaagcat actgatgcat taagccgaaa      2880
     cccttacgta gcagtggtta ctctgcatga cgaaatcaga caagcacaac agacagatga      2940
     tggtataaaa gctatattag agatattaca agaaagaagc tatggtgatt attatattga      3000
     taatggattg ttgtacaaag gagtggaaaa gcatctagtg ataccaaagt ctatggaaaa      3060
     tgaaatcata agaagagctc atgcaaatgg acacttttca aagaaaaaga tgactgaatt      3120
     aataagtaaa gattatttta ttaagaacct agataagaaa attgaagatt tcattaccag      3180
     ttgtattcca tgtttattag ccacgcgtaa ggagggaaaa caggaaggtt ttctgcaacc      3240
     aatcgaaaag gaagaatcac cattacacac acttcatttg gatcacattg gtcccatgac      3300
     agagacgaag aagcagtaca accatattct tacaattgta gacgcattta cgaagttcac      3360
     ttggattttt cccactaaga gcaccaccag taaagaaaca attgaaaagt tgaaaattca      3420
     ccagcaacat tttggcaatc ctactagatt tataactgat cgaggaacag cttatacgag      3480
     taatgagttt caagagtatt gtaaagatga aaacatacag cacatcaaaa ttacaactgg      3540
     gatacctaga ggaaatggtc aggttgaaag agttcatcgt actataatct ctgtacttac      3600
     aaaattgtgt atagaaaacc cttcgctttg gtacaggcat gtaagtagat tacagcgagc      3660
     tctaaatagt acttttcagc gaagcataaa ttcaacaccc tatcaactat tgattgggac      3720
     taaaatgaga atgaaagaag atattgagat ctatgacttg cttttggaag aaggaagaga      3780
     aagctattca gaggagagag aaaaactcag agaaaaagct aaggaacaga ttctacaggt      3840
     ccaggaagag aatataagaa atttcaatag aaaaagaaaa gaaagcatga agtacaaaga      3900
     aggagatttg gtggcaataa aacgcacgca atttggaact ggaatgaaaa taaaagccaa      3960
     atatctagga ccctataaag ttataaaagt gaagaggaat gacagatatg aagtgaaaaa      4020
     gctggatcct aatacggaag gacctggtgc aacctctagt tcagctgatt gcatgaagtt      4080
     gtggccagat gtcaacccca aaacctaaag cataagagtt gatttataat ttttgttttt      4140
     tttttggttt gtgtgagagt tttattccat tgttaactta gtttattgat ttggttgtaa      4200
     atctgttgta ctacaatgtt actcttgttt attaccaata agtgatctgt atttgttcat      4260
     atggtgtaat tttgttacct cacaaaatta ctagtttgtt gtataaactt aagcttgttt      4320
     aagtaaagaa ttgttacttg gtcttgtaaa ttcgatttaa gttaaataat atattagatt      4380
     aatgaatgca tgtggtgaat gtttgagagc atgtctgagg acagacatgg atcaggaatg      4440
     gccgat                                                                 4446
//
ID   Gypsy-10_TrNi-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-205
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 168-168 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 205 BP; 78 A; 26 C; 55 G; 46 T; 0 other;
     tgtgggatat tgtaatttaa gtaatcggaa cgcaacggat gaaggagagg gaagtatgtg        60
     tgcgagaagg acggaaggct aatggcgaaa aagtgtggaa cgacgacgga cgatacggtg       120
     tttaaaataa gaaagtgtga ttcgaatgta aaaataaaac aattcaaaag tgacctacgc       180
     atttattatt gccataaatc ccaca                                             205
//
ID   Gypsy-10_TrVa-I repbase;    DNA;    INV; 5015 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5015
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 373-373 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..4789
FT                 /product="Gypsy-10_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSNEIEESNFSSNGPSNFQSACSSMTTVGDLSENWK
FT                 NWYTEFQIFMLAANLTKESDGRKNALLLHYMGKHALPIFKSFDLEVEKAKH
FT                 TEVVTKFQDHFLPKVNVTVERITLFNRKQKPGESFKSYLTALKNLSLNCKL
FT                 DKLRDEIVKDLFIGGLNSENQVIKEKLILEEVQSLEQVFEIAQKIQLSVER
FT                 TEMLNPEVSVNEVNQVQNSHQWNRNSGRKGSNFHRQSKYGSSQSSKSSDQS
FT                 RGESSQSYNPNNGYGHRAHNSYKKQQWSRNRSQSRNRSPSHQPNRHRSPSS
FT                 HNQSKKNQPCNLMSVCAGCGNPYHRGQCPALNVTCNTCGKRNHFSRFCPKR
FT                 SVHNLNIESDQDESDQDESSDETSLVANLNCNDSDKEILFVNKIECNQMSN
FT                 NSKVNHADKWYITISINDRALKAQVDTGAQTNMLSILTFRKLNINCQSIKP
FT                 TFTKIKSVDGSEVDIVGECFLNFNFNNKFYTCRFHIANFDCDTILGLAAAR
FT                 ELSLINIINSLENSVSHSNSEKIVKEFKDAFKGIGCLKESEIVLEVDENVK
FT                 PVTDPQRRVPINVRKELKKHLDELVKLNIIKKVHNYTPWTNSIVIARKKDK
FT                 SIRLCLDPRNLNKAIKRPVHCLPDVDFIRSELKNSKYFTTLDINCGFWNLK
FT                 LSKNSSKLCTFNTPFGRFRFLRLPYGINAASEIFQAIMVEKFKDIPNVIIY
FT                 IDDFLIHAKTKEEHDTTLRKVLHRAKELGIKFNLSKCKFFRLSLKFLGEIY
FT                 SENKITIDPERVKAIVELSSPTSVQQLQRFLGMVNYIASFLPNLASRTENL
FT                 RKLLRKDVIWEWLPTHEKEFIELKHLITNAPILTNFDVSKPVILSVDASKD
FT                 ALGAFISQNGKPVAFGSSTLTQTQQLWGQIEKELLAIYYGCSKFHQYLFGQ
FT                 KIVVESDHKPLETLFKKPYKDIPVRLQRLMLRLERYDITIKWVPGKKLVVA
FT                 DTLSRSPLKNEVYNSKELQEDMNCQIALLNSHLNDCITEKKFNEFKVETAK
FT                 DETLNLLKNYFYNGWPATKRNVHILAKPYFHVRDQIFVQNDLVFKSESIIV
FT                 PASLKFKMLKIMHEGHLGFESSFRRAKNVIYWPFMKSDLQNVVNSCKTCIK
FT                 FSKNNPKQPFTPHDITSFPWEKVGCDLFEFDHEKFLLVVDYYSKFPEVISL
FT                 KKATSAPYVINSLKSIFARHGIPLVLCSDNGPPFDSDAFRKFALDFNFEHV
FT                 TSSPYYPQSNGLVERTIQSIKNLMYKCKESNEDFHIALLNFRNTPKQDAPS
FT                 PNEILMSRVTRSKLPCSKNTLMPKLINPSFYKQTLEKRRNSIIQRNSILKP
FT                 LPNLNVNDNVYFKKTPNDTWQQAKVFEKCVEPNSYLLKTPTGKLFRRTRSH
FT                 IKATPKVVSFSFNTSPTNSFKKSINDHLTSAYQDKIINFPIVPSTHNPSLN
FT                 QHTPKLITIDDSDDETFGTPSSSFPLGIGTPKIPVSTASRSIRGYHKPVYF
FT                 TRKANNTEIKPPQRYSP"
XX
SQ   Sequence 5015 BP; 1691 A; 857 C; 807 G; 1660 T; 0 other;
     tggtgtcagg ttcgcggtcg aacaaaagtc aagtcgttcg tacgtcagtc ggtattttat        60
     tgttttaatt atgtgatttt tacttctagt caaatcgtcg ttatacgatc cgggatcgag       120
     tcaaaaaatt cgccgttgtt agtcgtaagt tcgaatttta aattgtcgtt atgtcgttcc       180
     tttgttttgt tacggaaaat ttcattgtga aacaaataat gttcgtcttg tttctcatgt       240
     gattgcgtct ctcttttgct cgtttctcaa ctccttcacg tgtgtcggta atctaaccta       300
     gcttctcttc tagtcatcat tctattattc ctatcacgcc aatatgtctt ctaatgaaat       360
     tgaggaatca aacttttctt ccaacggtcc aagcaatttt caatcggctt gttcatctat       420
     gacaacagtt ggtgatcttt ctgaaaattg gaaaaattgg tatacggaat ttcaaatctt       480
     catgttagcc gctaacctca ctaaagaatc tgatggtaga aaaaatgctt tgttgctaca       540
     ttacatgggt aaacatgcat taccgatctt caaatctttt gatttagaag tagagaaagc       600
     taaacacact gaggtggtaa ctaaatttca agatcatttc ctaccgaaag ttaatgtcac       660
     ggtagaacgc atcactttgt ttaaccgtaa acagaaacca ggtgaatcgt ttaagtcata       720
     cctcactgct ttgaaaaatc tcagtctcaa ttgcaaatta gacaaactca gagatgaaat       780
     agtcaaagat ctgtttattg gtggtctaaa tagtgaaaat caagtaatta aggaaaaatt       840
     aatcctggaa gaagttcagt ctcttgagca agtctttgaa atcgctcaaa aaattcaact       900
     gtctgttgaa cgtactgaaa tgcttaatcc ggaagtcagc gtcaatgaag tcaaccaagt       960
     tcaaaattct catcaatgga atcgtaactc tggtcggaaa ggttcaaatt ttcatcgtca      1020
     gtcaaaatat ggaagtagtc agtcctccaa atcatctgat caatctagag gtgaaagtag      1080
     tcagtcttac aacccaaata atggatatgg tcatcgtgcg cacaactcgt ataagaagca      1140
     acagtggtct cgcaatcgtt cacagtcaag aaatcgttct ccgtcgcatc aaccaaatcg      1200
     tcatcgttcg ccttcatctc ataatcaatc taagaaaaat caaccttgca atttaatgtc      1260
     agtttgtgct ggatgtggaa atccctatca tcgtggtcag tgtccagctc tcaatgtaac      1320
     ttgtaacact tgcggtaaga gaaatcattt ttctagattc tgtcccaaaa gatcagtcca      1380
     caatctcaat attgaaagtg atcaagatga aagtgatcaa gatgaaagta gtgatgaaac      1440
     ttcattggta gcaaatttaa attgtaacga tagcgataag gaaattttgt tcgtcaataa      1500
     gattgaatgc aatcaaatga gtaacaattc taaagtaaat catgcagata aatggtatat      1560
     tactatttca atcaatgata gagctcttaa agctcaagtc gatactggtg cgcaaactaa      1620
     tatgttgtct attttaacgt ttcgcaaatt aaacattaat tgtcaatcga taaaaccgac      1680
     atttactaaa attaaaagtg tcgatggatc tgaagtagat attgtcggtg aatgtttttt      1740
     aaattttaat tttaataaca aattctatac atgtaggttt cacattgcta actttgattg      1800
     tgatactatt cttggtcttg cagcagcaag agaacttagt ttaattaaca ttattaacag      1860
     tctggaaaat agtgtgtccc atagtaattc tgaaaaaata gttaaagaat ttaaagatgc      1920
     ttttaaaggt ataggatgtc tgaaagaatc agaaattgtt ttagaagttg atgaaaatgt      1980
     aaagcccgtc actgatcctc agaggagagt ccctattaat gttcgtaaag aattgaagaa      2040
     acacttggat gagttagtca aacttaatat aattaaaaaa gttcataact atactccatg      2100
     gacaaactcc attgtaattg cccgtaaaaa ggataaaagt attcgtcttt gcctggatcc      2160
     aagaaattta aataaggcaa ttaaaagacc tgttcattgt ctccccgatg tagattttat      2220
     tcgttctgag cttaaaaatt ctaaatattt tacaacgctt gatattaatt gtggcttttg      2280
     gaatttaaag ttaagtaaaa acagtagtaa actctgtact tttaacactc catttgggag      2340
     gtttagattt ttaagattac cctatggaat taacgctgca tcggagattt ttcaagccat      2400
     aatggtagag aaattcaaag acatacccaa tgttattatt tatatagatg attttctgat      2460
     ccatgcaaag acgaaagaag aacatgatac aactttgcga aaagttcttc acagagccaa      2520
     agagttaggc attaaattta acttgtccaa atgcaaattt tttcgcttat ccttgaaatt      2580
     tttaggtgaa atttattccg aaaacaaaat caccattgat cctgaacgtg tcaaagccat      2640
     tgttgaatta agttctccca ctagtgtgca gcagctgcaa agatttttag gaatggttaa      2700
     ttatatagcc tcttttttac ctaatttagc atcccgtact gaaaatctca gaaaattact      2760
     tagaaaagat gtcatatggg aatggctccc cactcatgaa aaagaattca ttgaattaaa      2820
     acatcttata actaatgctc ctattttaac taattttgat gtcagcaaac ctgtaatttt      2880
     gtcggtagat gcctctaaag atgcattggg tgcattcatc agtcaaaatg gtaaacctgt      2940
     agcttttggt tcttccacgt tgactcaaac ccagcaactt tggggtcaga tagagaaaga      3000
     gttgttagct atttactacg gatgttctaa atttcaccag tacctatttg gtcagaaaat      3060
     agttgtagaa agtgaccata aacctttaga aactttgttt aaaaaacctt acaaggacat      3120
     tcccgtcaga ctccaaagat taatgctcag actcgagagg tacgacatta caattaaatg      3180
     ggttcctggt aagaaacttg tggttgctga taccctaagt agatctccgt taaaaaatga      3240
     agtgtacaat tctaaagaac ttcaagaaga tatgaattgt caaattgcgt tactcaattc      3300
     tcatcttaat gattgtatta ctgaaaagaa atttaatgaa ttcaaagtag aaacagctaa      3360
     ggatgaaact ttaaatttat taaaaaatta tttttataat ggttggcccg ccaccaaacg      3420
     taatgttcat attttagcta aaccgtattt tcatgttcgt gaccaaattt ttgttcaaaa      3480
     tgatctagtc ttcaaatcag aaagcataat tgttcctgct tctctcaaat ttaaaatgtt      3540
     aaagattatg catgaaggac atcttggttt tgaatcgtct ttcagaagag caaaaaatgt      3600
     aatttactgg ccttttatga aatctgatct tcaaaatgta gttaatagtt gtaaaacatg      3660
     catcaaattc tcaaaaaaca atccgaaaca accttttact cctcacgata tcacttcatt      3720
     tccgtgggaa aaagtaggat gtgacttgtt tgaatttgat catgagaaat ttttactcgt      3780
     tgtggattat tactctaaat ttccagaggt gatatctctg aaaaaagcaa ctagtgcacc      3840
     atatgttatc aatagcctta aatccatctt tgctaggcat ggcattcctc ttgttttgtg      3900
     ttctgataac ggtcctcctt tcgactcaga tgcttttaga aaatttgcac ttgatttcaa      3960
     ctttgaacat gtaacttctt ctccctacta tcctcaatct aatgggttag ttgaaagaac      4020
     cattcaatca attaagaatt taatgtacaa gtgcaaagaa tctaacgaag attttcatat      4080
     tgcgcttctt aactttcgca atactccgaa gcaagatgct ccgtctccta acgaaattct      4140
     catgtctaga gtgacccgtt ctaaattacc atgttcaaaa aacactttaa tgcctaaatt      4200
     aattaatcct agtttctaca aacaaacgtt agaaaaaaga cgtaattcca taatccaaag      4260
     aaattctatt ttaaaaccgt taccaaatct taatgttaat gataatgttt attttaagaa      4320
     aactccaaat gatacttggc agcaagctaa agtgtttgaa aagtgtgtcg aacctaattc      4380
     ttatttgtta aaaactccaa ctggaaaatt gtttcgacgc actcgttcac acataaaagc      4440
     aactcctaaa gttgtgtctt ttagttttaa tacttccccg actaatagtt ttaaaaaatc      4500
     tatcaatgat catttaacat cagcatatca agataaaatc ataaattttc ccatcgtgcc      4560
     aagtactcat aatcctagtt taaatcagca cactccgaaa cttatcacta tagatgattc      4620
     tgatgatgaa acttttggca ctccgtcatc atcatttcct ttaggaatag gaactcctaa      4680
     aattccggtt tcaactgctt cgcgctctat aagaggttac cacaaaccag tgtattttac      4740
     acgcaaagca aacaatactg aaattaaacc tcctcaacgg tattcccctt aagtgattta      4800
     aaaaaaaaaa aaaaaaaaaa aaaattgtgc tgatttatat tttttttatt tttatgaaat      4860
     gcctttcaca tttgttattt atttttttta agttgttaat cataactgtg atattataat      4920
     gtgtttcatt tttatgttta gatgtaagaa tttttatcat tgtgttgata tgttaaaaat      4980
     tttttttttt ttaaaaaaaa aaaaaagaag gatgt                                 5015
//
ID   Gypsy-10_TrVa-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-10_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-212
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 314-314 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 212 BP; 61 A; 41 C; 41 G; 69 T; 0 other;
     tgttagtata taagtagtca attagtaaaa tgttattggt taagttggta ctgtgttacc        60
     caagagtaca gggttgtctg cccttccata tacgagggca ctcgaataaa agatggccta       120
     accagccgat cgtgtggtcc tgtaaatctg actttcaatc attttatcct ttctaatccg       180
     ctcgcgatat tcatgaaata tgaatcctaa ca                                     212
//
ID   Gypsy-110_AA-I repbase;    DNA;    INV; 4966 BP.
XX
AC   AAGE02027584;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-110_AA_;
KW   Gypsy-110_AA-LTR; Gypsy-110_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4966
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027584; Positions  112090  107125.
XX
CC   Positions [3980-4456] - Integrase core
CC   'AGCGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           731..2680
FT                 /product="Gypsy-110_AA-I_1p"
FT                 /translation="MDLLQVDDSRPVQQFRCDDIEKHRLYNEWRIWKGALE
FT                 CYFEAYDIVDQRKKRAKLLHLGGPQLQRIFQNLPNRESFPLVSLEKQWYDV
FT                 AINALDDFFQPCRQDCLERHKLKQMKQKEGERFADFMLRLRQQASDCGFDK
FT                 YSNEIKDVLTEIFLTDAVIEGCASMELRRRILQQDRSLSEIETLGVALESI
FT                 DIQVKDLNGKSKEIAGGQQVYKISAGYTEDRNKMQFAQRGARRDSKKFSDP
FT                 RDNKFSQKIYRCYNCGRRDHISTDRRCPARNIVCHGCKVTGHFESCCRLRN
FT                 SRKKSVVRSAGDRDRINVVEEEASTPELPVEQQSGKTYYAFYSGNDTNVLT
FT                 SEVGGIKLDLLVDSGSDANLIPDTVWEKLKHDNVNVRQSTKGSSRILKGYA
FT                 SELPLPILGTFVADVKAGNCLVAAEFYVVKGGQRSLLGDKTSKELGILKVG
FT                 LDVYPVTSETKPFSKIKDVQVQIHMDPSIKPVFQPIRRVPIPLEDAVNRKL
FT                 EQLLIKDIIEEKQGPASWVSPLVVVGKNNGEPRICLDLRRVNEAVLRERHP
FT                 MPVVDEYLARLGKGRYWSKLDVKDAFLQVELAPESRDVTVFITNKGLFRFK
FT                 RLPFGLVTAPELFQKVMDQILAGCEGTSWYLDDVIIEGSTREEHDERLEKV
FT                 C"
FT   CDS           3056..4936
FT                 /product="Gypsy-110_AA-I_2p"
FT                 /translation="MLTKKDSKFEWTGLHQKSFDSIKAAMTDVLRLGFFNK
FT                 EHRTTVMADASPTGLGAILIQTDPSGNSRVVTCASKSLTDTERRYCQTEKE
FT                 ALGIVWSVERFQVYLYGRQFDILTDCKALVYLFTERSRPCARIERWVLRLQ
FT                 AFDYLVCHIPGERNLSDVLSRLSTVAPVPFDQREEMFVKQVVLSSATSVAL
FT                 RWDEIVAASLEDSKIQEVLDMIDKGNIAELPLSFRVIASELCRFGDVLLRT
FT                 DRIVIPNSLRERVIKIAHEGHLGMRTMKSHLRAAVWWPKMDMAIESFVKKC
FT                 RGCLLVSTPDPPQPMIRKELPNGPWEDIAIDFLGPLPNGETLLVVVDYYSR
FT                 YVEICEMHKITAKLTIEELGKIFCRYGVPITIRADNGPQFNAGCEEFKNFC
FT                 EEFGIRAVNTIPYWPQQNGEVERQNRSILKRLRIAQELGQDWRSVLCQYIL
FT                 SYHATPHPTTGRSLSELLFGRRIRTKLPQLPHSSHTDEAVRDKDRFQKEKG
FT                 RIAADSKRRARSSMIEVGDRVLVKRMRKENKLSSTFAPEEFVVVRKSGADT
FT                 TVRSTSDGKDYRRNIADLKRIEPEEQQQNAPDDIAEACTLHHEELQPQQSH
FT                 IVPVASEDQTSGSKRVRKEPVKFSDYIPH"
XX
SQ   Sequence 4966 BP; 1476 A; 905 C; 1243 G; 1342 T; 0 other;
     atttggcgac gaggaaatta agaatggtaa gtggaaatat ttataataat tcaagtgcac        60
     gaggcttcgg aaattgagtt tgtttcgttt gaaaatggcg gagctaagga atgttgacct       120
     gcatgtgtat tagtgtgttc atatatgaca aataccatgc tccgctaggt gtggaattcc       180
     aataagaatt gacatgttta tgttcatgga ccaaccgttt gcgatgagca tagcaatgca       240
     cagtgttgct tgtgatgaag atagtgaatg gaaatgattt cattaatcca gccaagccaa       300
     tgatagttta aagtaaatat gtacctatag agtcttctat aggtggtgtt cagatgagtt       360
     gaacacgggt agattttcag gaaggaccac tagttgttgc tagaggaggt gattatgtta       420
     atcacgggat caaatatgta agtactttag ttgttgctat aggaggtggt caacgcattg       480
     atcacgggtt ggttttgttc agtacctgta gtcgtacagg aggtggtcgg ataaaccaac       540
     cacgggcatg tattatggaa tgcgaaccga acacaaaatg aaaaatgatg tctatcaggg       600
     tttgaaatta gaaaacaaat aaaaagatga tggaattaaa attgaaagtt tgttttgatg       660
     cataaaatta tatggtttgg aaagatttat ttacgtgcat atacaatgtg tctgattggg       720
     gttttgttgg atggatttgt tacaggtgga tgatagccga cctgtacagc agtttcgatg       780
     tgatgacatc gaaaaacatc gtttgtacaa tgagtggagg atctggaaag gtgcgttgga       840
     atgctacttc gaagcatacg atattgtgga ccaaaggaaa aagagagcca agcttttgca       900
     tttgggtggt ccacagcttc agcgaatctt ccagaatctt ccaaatcgtg aaagtttccc       960
     actcgtgtca ttggagaaac aatggtacga tgtggctatc aacgcattag atgatttttt      1020
     ccaaccgtgt cggcaagatt gcctagagcg ccataagcta aaacaaatga agcaaaagga      1080
     gggagaaaga tttgctgatt ttatgctgag attacgccaa caggcttcgg actgtgggtt      1140
     tgataagtat tcgaatgaga tcaaagacgt tctgacagag atattcctca cggatgcggt      1200
     aattgaaggc tgtgcgtcta tggaattacg gcgccgaatc ctgcagcagg atcgttcact      1260
     tagcgagatt gaaactctgg gagtagcgtt ggaatccatt gacattcaag tgaaagatct      1320
     caacgggaag tcgaaagaaa ttgctggcgg acaacaagtc tacaaaatct ccgctgggta      1380
     taccgaagat cgaaacaaga tgcagtttgc acaacgaggt gcacgacgcg attcgaagaa      1440
     gttcagcgat ccacgggata acaagtttag tcagaaaatc taccggtgct acaactgtgg      1500
     ccgccgtgac cacatctcta ccgatcgaag gtgtccggca cgtaacatcg tgtgccacgg      1560
     atgtaaagtg actggtcatt ttgagtcttg ttgccggttg cgaaattcaa gaaagaagtc      1620
     tgtagttagg tcagcaggtg atagagatcg catcaatgtc gtagaagagg aagcatctac      1680
     tcctgaactc cctgtggaac agcaatctgg taaaacatac tacgcgtttt attccggcaa      1740
     tgataccaac gttctgacga gtgaagttgg tggaataaaa ttagatcttc tggttgattc      1800
     tggttctgac gccaatctaa ttccggatac cgtttgggaa aagttgaagc acgataatgt      1860
     caatgttcgc cagagtacca agggtagttc tcgtatccta aaaggttacg caagtgagtt      1920
     gccgctacct atcttaggca ctttcgttgc tgatgtcaaa gctgggaatt gtttggttgc      1980
     agcagaattt tacgtcgtta aaggtggtca acgatcctta cttggagaca aaacctctaa      2040
     agagttgggc atcctgaaag tcggtttgga tgtctatcca gtcacgagcg aaacaaaacc      2100
     gttttctaag attaaagatg tccaagttca gattcatatg gatccgagta tcaagccagt      2160
     gttccagccc attcggcggg ttccaatacc attagaagat gcagtaaacc gaaagctaga      2220
     gcaactgctt atcaaggaca tcatcgaaga gaagcaaggg cctgcttctt gggtttcgcc      2280
     ccttgttgtc gtcggtaaga acaatgggga accaagaatc tgcctggatc tacgtcgtgt      2340
     caacgaagcg gttctacgtg aaagacatcc aatgccagtc gtagatgagt acctagctag      2400
     actaggcaaa ggaaggtatt ggagtaagct agatgtgaag gatgcctttc tacaggttga      2460
     acttgcacca gagtcacgtg acgttaccgt gttcattacg aataagggat tgtttcgttt      2520
     taaacgactt cccttcggtc tagttaccgc acccgagcta ttccagaagg tgatggacca      2580
     gatactggcg ggctgcgagg gaacttcatg gtacctggat gacgtgatca tcgaaggtag      2640
     cacgcgagag gaacatgatg agcggctgga aaaggtatgt taaaactgta ggctttgatt      2700
     tgtttgattt gagaagtgaa ttgaaacatt ttggtttttt tttgtaacac ataatttgac      2760
     attttcaaga taataaagac ttttgtttga tgtatcatgt tgtcaggtgc tgaaacgatt      2820
     tgaggaacgc agagtcgaac taaattggga aaaatgcgta tttggggtaa ccaaagtgga      2880
     ctttctggga catcaaattt ctcctgatgg aattgttcca gcaaatgaca aagtggtcgc      2940
     agtccagtca ttccgacagc cggaaaatga aggagaggtt cgaagttttt tgggtttagc      3000
     caactatcta aacaagttta tacctaattt ggctacactg gatgaaccac ttcgaatgtt      3060
     aacaaaaaaa gattctaagt ttgaatggac tggtttacat cagaaatcgt ttgatagcat      3120
     taaggctgcg atgaccgatg ttttaaggct tgggtttttc aacaaagaac accgaactac      3180
     agttatggca gatgcaagtc ctacgggatt aggtgcaata ttgattcaaa ctgacccatc      3240
     aggtaatagc cgagttgtta cctgtgcatc gaagtcgctt accgacaccg agagacggta      3300
     ctgccaaacg gagaaggagg ccttaggcat cgtttggagt gtggagcgtt ttcaggttta      3360
     tttgtatggc cgccagttcg atatcctaac agactgtaaa gcattggttt atttgttcac      3420
     ggaaagatca cgcccatgcg caagaataga acggtgggtt cttcggctac aagcatttga      3480
     ttatctagta tgccatatac caggtgaaag gaatttgtca gatgttcttt cccgattgag      3540
     taccgtagct ccagtaccat ttgatcaaag agaggaaatg tttgttaaac aagttgtctt      3600
     atcatcggca acgtctgttg ctttaagatg ggacgaaatc gttgcagcat cgttagaaga      3660
     ctctaaaatt caggaagtac tagacatgat tgataaagga aatattgcag aattgccgct      3720
     ttcttttcga gtgatagcca gtgaactgtg tcgatttgga gacgttctgc tacggactga      3780
     tcgaatagtc attcctaatt cgctacgtga gagggtaata aagatcgccc acgaaggaca      3840
     tttggggatg cgaacgatga aatcgcatct acgcgctgct gtgtggtggc cgaagatgga      3900
     tatggcgata gaatcttttg tgaagaagtg ccgaggatgt cttttagttt caactcctga      3960
     tccacctcaa cccatgattc gaaaagagtt gccgaacggt ccttgggaag acatagcgat      4020
     cgattttctt ggaccacttc caaatggcga aacgttactg gtcgttgtag attactacag      4080
     ccggtatgtt gaaatttgtg aaatgcataa aatcactgca aaactaacaa ttgaggagtt      4140
     aggaaagatt ttctgtcgct atggtgtacc aatcacaatt cgggctgata acggtccaca      4200
     gtttaatgcc ggctgtgaag agttcaaaaa tttctgcgag gaatttggca tccgagctgt      4260
     caacaccatt ccttattggc ctcaacaaaa tggggaggtt gaaaggcaaa atcgttccat      4320
     cctgaagcgg ttaagaattg cacaagaact aggccaggac tggaggagtg tactgtgtca      4380
     atacattttg tcgtaccacg caacacccca tcctactaca ggtcgatctc tctcggaatt      4440
     gttgtttggt cgaagaattc gcacaaagct tccacaactc cctcacagtt ctcatactga      4500
     tgaagctgtt cgagacaaag atagattcca gaaggaaaag gggagaattg cagctgactc      4560
     aaagcgtcgt gcccgttcaa gtatgattga agttggtgat cgagttttgg tgaagcgaat      4620
     gcgtaaagag aataagctga gctctacatt tgcaccagaa gagtttgttg ttgttcgcaa      4680
     aagtggggct gacacaacgg tgcgttcgac atcagacgga aaagattata gacggaacat      4740
     agcagacctt aagagaattg aaccagaaga acagcaacaa aatgctccag acgacatcgc      4800
     ggaggcttgt acgttacatc atgaagagtt acaacctcaa caaagccaca ttgtaccagt      4860
     tgcttcagaa gaccagacgt cgggttcaaa acgagttcga aaggaaccgg ttaagttttc      4920
     ggattatatt ccacattaac aatgtttaaa taaaaccaag gggggt                     4966
//
ID   Gypsy-110_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   AAGE02027584;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-110_AA_;
KW   Gypsy-110_AA-I; Gypsy-110_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-230
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027584; Positions  107124  106895.
XX
SQ   Sequence 230 BP; 65 A; 34 C; 74 G; 57 T; 0 other;
     tgtagggtct ggcatcactg gagggctgac gtcgtaccaa cgagaagaag atgtgttact        60
     ctttgggcgg ggaagtaaag aagaagtgat gacgggggag aatggttaag accgtgaagt       120
     ggttagatca cgtatatcga gtggtggtga gtagaggaat aaactattga gatatattgt       180
     taaatccgtg acctgcgtga ttgtacgagt attccgaagt gcccctcaca                  230
//
ID   Gypsy-111_AA-I repbase;    DNA;    INV; 5468 BP.
XX
AC   supercont1.213;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-111_AA_;
KW   Gypsy-111_AA-LTR; Gypsy-111_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5468
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.213; Positions  726093  720626.
XX
CC   Positions [1942-2370] - Reverse transcriptase
CC   Positions [4318-4794] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..2307
FT                 /product="Gypsy-111_AA-I_1p"
FT                 /translation="MASPKKRTVVVKEENGRQQLSASETVFTKFVEQAKQE
FT                 PLSPGIERRFSNVKVYDIMEEESDEGGEATVSVCSRGSTVTESSDRSRAHL
FT                 RHSREIFLHPIEVERIIPSFNGKEGGCSRWIGKIEGYAEVYGWSPRARLHY
FT                 AHSRLTGTARKWFEAQEEATVDWECFKTSICEAFPSRMNEADVHFKLAKRF
FT                 RGKDEDEESYVYEMQKIAKEGRLSDEAIIAYIIRNVNDDKIQEYLISKDLR
FT                 HVKDLIRCLQRYLRMRAVVNTKPYVKKDTITHPVSRINERKESTVFEDTNK
FT                 QPQVRRCFNCNESGHKSAKCPLPQKKPRCTKCGKVGHLEKECLIATGIAPK
FT                 QAFESNQIRFLQNDDQREDAGIEADPYYLEVDEGSRTPAKILFKKSCQDFN
FT                 ALVDLGSPVSLIKVSKLPSDFDYSSNVPPHEIIGINGTRLMMLGSFRGLII
FT                 VGSRVFVVSLIVVPDDTISKEVNVLLGRDFTNGNGITGIVFRRESVVSDYN
FT                 PQLMIEAFGSRDDCLCVLIEDKEQIDLNVGDSQETTRLKTVVEKVFNDCYV
FT                 NRPSPSQPLVKMEVEIKLKEHKPFTVTPARLSVFEKQELNKIIEEILDKDI
FT                 IRKSQSNDYCRVVLVKKKNNTYRMCVNFKPLNKLVERDNFPMPVIEDLVIK
FT                 LRDKRYFSSLDLKNGFYHVDIAENSKKYTSFVVDGGQYEFNKLPFGYANSP
FT                 AAFVRYINKVLDELI"
FT   CDS           4120..5277
FT                 /product="Gypsy-111_AA-I_2p"
FT                 /translation="MGASVIYRYHNDMGHFGADKVCAEIRRLFWFPEMKKK
FT                 VLEHGKSCITCITFNPRDKKYDGYLNNIDKGTIPFDTVHVDHLGPLEITKS
FT                 KNVHIFAVIDVFSKFIKLYATRSTKTYEVLKSLRSYISYYSKPRRIISDRG
FT                 TAFTSKEFESFCVTRGIEHVLIATGCPKANGQIERYNRTLVPLLAKLVEER
FT                 KTSWDNVLFEAEYLLNNSYNRSIANSPAVLLFGVRQRNHFESDLERFLENL
FT                 NKEVDRDIDCIRSDAVEKIKQLQEYNKKKYDVKCKRNTVFKQGDLVAIRTV
FT                 KVSGENSKLKAKYRGPYQIKRVLDNNRYIVTDLEGYQVTSTYFDGTFDPLN
FT                 LRLYKKAATRDTEIFSSSCSSEDLSFKGYSEDESDFYGFPDEE"
XX
SQ   Sequence 5468 BP; 1726 A; 1022 C; 1192 G; 1528 T; 0 other;
     gaagtgggat ttgaccgaaa aatgattgtg attagtacgc ggatgttcag tgtttaattt        60
     gactaatccg tatcattcaa ttttccctga aaaacgaatt gtgaaggaat tgctgattcg       120
     acagcacgca acattttcaa cgccatcttg tgtttcggaa acatggcgtc gccgaaaaaa       180
     cgcaccgtcg tcgtgaagga ggaaaatggc cgacaacaat tgtctgcatc ggagacagtc       240
     ttcaccaagt ttgtagagca agcaaagcaa gaaccgttgt ctccagggat tgaaagaaga       300
     ttctcgaacg ttaaagtgta cgacataatg gaagaagaat ccgacgaagg aggtgaagca       360
     accgtgagcg tatgctctcg tggatcaacc gtgactgaat ccagcgaccg tagtagagct       420
     catttgcgtc attctcgtga aatatttctt catccgattg aggtggaacg aattattccg       480
     tcgttcaacg gtaaagaagg aggttgcagt cgatggattg gtaagattga aggatatgcc       540
     gaagtctatg gatggtcgcc gcgcgcccgt ttacactacg cccactcaag gttgaccggc       600
     acagcgagaa aatggtttga ggcacaggaa gaagccacgg tggattggga atgtttcaag       660
     acgtcaattt gtgaagcgtt tcctagtcgt atgaacgaag cagatgtgca cttcaaactg       720
     gcgaagcgat tccgaggtaa ggatgaagac gaggaaagtt atgtgtacga gatgcagaaa       780
     attgccaaag aaggccgatt gtcagacgaa gctatcatcg cgtacattat aaggaacgtg       840
     aacgatgaca agatacagga gtatctgatc tcgaaggatt tacgtcatgt caaggatctc       900
     atccgttgtc tacagcgtta tcttcgaatg agagctgtcg tcaatactaa accatatgtt       960
     aagaaggata ccataacaca cccggtgtcc cgcatcaacg agcgcaagga gtctacagtc      1020
     ttcgaagata ccaataagca acctcaagtc agacgctgtt tcaattgcaa tgagagtggt      1080
     cataagtcag ccaaatgccc attgccacag aagaagccgc gatgcactaa atgtggaaag      1140
     gttggacact tggagaaaga atgtttgatc gctacaggaa tcgcaccgaa acaagccttc      1200
     gaatcaaatc aaatccggtt tttgcagaat gacgatcaac gggaagacgc tgggatcgaa      1260
     gcggatccat attatttgga agtagacgaa ggaagccgga caccggcgaa gattttgttc      1320
     aagaagtcat gtcaggattt taacgctctt gtcgatctag gatccccggt aagtttgatt      1380
     aaggtttcta aactaccgtc tgattttgac tattcatcta acgtaccgcc acatgagatc      1440
     attggcatca atggcacgcg tttaatgatg cttggatcat tccgtggttt gattattgtt      1500
     gggagtcgcg ttttcgttgt ttctttgatc gtcgttccag acgataccat ttcgaaagaa      1560
     gttaatgtcc tcttgggccg agacttcacg aacggcaatg gaataacggg tattgttttc      1620
     aggagagaat ccgtagtgtc ggattataat ccacagctga tgattgaggc ttttggtagt      1680
     cgcgatgact gtctttgcgt attgatcgag gataaagaac aaatagacct aaacgtagga      1740
     gactctcagg aaacgacacg tttgaagaca gttgtagaaa aagtttttaa tgactgttat      1800
     gtgaaccgac caagcccttc acaaccgtta gtaaagatgg aagtggaaat caaattgaag      1860
     gaacataaac cttttaccgt aactccagcc agattgagtg tatttgaaaa acaggaatta      1920
     aacaagataa tcgaggaaat tttggacaag gatattatta gaaaaagcca gtctaacgat      1980
     tactgtcgcg tggtattggt taagaagaaa aataacacat accgaatgtg tgttaatttt      2040
     aaaccgctta acaaattggt tgagcgcgat aatttcccaa tgcccgtcat tgaggatctc      2100
     gttattaagc ttcgtgataa acgttatttc agtagtcttg atttgaaaaa cgggttttat      2160
     cacgttgata ttgctgaaaa ctccaaaaag tatacttcat tcgtagttga cggtggccaa      2220
     tacgaattta ataagcttcc attcggatat gccaattcac cagccgcgtt tgttcgctac      2280
     attaacaagg tcttagatga gttgatctag tcgggtaaaa taacggtttt tatcgatgat      2340
     attgttataa gtacagaaac tatcgaagaa cacatggacg ttttggcaga tgttcttcga      2400
     actctaaacg ataatcatgt aaaactccag ttacagaagt gttcttttct taagacccga      2460
     atcgactatg ttgggtacaa tataacgtac aatttgatac gtccaagcga tcgtcacatc      2520
     gattcggttc aatctatccc tattccggtg aatgttcacg cgctgcatcg tttcgtaggg      2580
     ctagtaagct acttccggaa atttattcaa gattttaata agttggctca tccgttatac      2640
     gaattgttaa agaaagatgc cccgtttaaa ttcgaagaga agcacgttgt cgcgttcaat      2700
     gcccttaagg ctagtttgat tcagaagccg gtgctcgcaa tatattcacc atctctcgaa      2760
     acagaagttc acactgatgc ttctagcgct ggattcgcag gtattttgtt tcaacgccag      2820
     gaagatgaca agaagtttca tccggttttg ttttatagtc gtaaaacaac tgccgcggaa      2880
     gccaagctcc atagcttcga gttggagact ctcgctgttg tatactcttc agagatttcg      2940
     catgtatttg ttcggaatga aattcgtaat cgtaacagat tgtgaggcta tgaaaaagac      3000
     attagagaaa agagatgtga atgcaaaaat atctcgatgg agtctttatc tcgaacaatt      3060
     tgattacact attgtacata ggccaggcga acgcatgcgt cacgtcgacg cgcttagccg      3120
     tgttaacatg cttttgcttg agctagaaga acatccgaac gatgtgttca ccaactcgat      3180
     ttacgtcgcg cagcttcaag atgaggatat ccaaaagatc aaagccgctg tacttgtagg      3240
     cactcataga gactacgaag tcagggacaa catcgtctat aaaaaggaaa aaaagaataa      3300
     actattactt tgcgtaccgt aaaatggggt gaagttgatc actttcgagc gattctgttc      3360
     tataactcct agtagaattc atgtattatt atccaaatat tttttaaaca tgtactggtt      3420
     ggatatctat cgaattatac aaacgaaatt ttgacgaaaa gttcactaaa ttacaaaaac      3480
     atttatttta tatcaaaaag tgaagttttt gattccgggg tgaagttgat caattattgc      3540
     gataagtttc ctgatataaa gagatatgct attcactaaa tttggggtca ctgaatctgg      3600
     aacaagttcc aaaaatatta caactcaatg atatatcgat caattttgaa ttttaatgtt      3660
     ggaaatttca gaacacacca cattaaacgc ctagaggtat gcaattttcc ttgaaattag      3720
     caactcgcgc acaaaaaaat acatttttct cagaaaatga ttgtttatcc acaatgcaaa      3780
     tttaaaactg gatttacaga acatatatgc aatgtaagaa atagtttatt taaatggtat      3840
     ctttatatag ccttgtccat agtcgattgt ttggagaaga accattcaac agttcatcaa      3900
     acatttaata aaaaaatctg tttttccatg gtataattat cttgaatgtc aaaccaaact      3960
     taggaacatg aagagcagcc atcaggtaac acgacgtcac agaaattgtg ctaattgaaa      4020
     tcaaatcaca gctctattga cagtttatac atgtgggtac atgaatgatc aacttctccc      4080
     cactgatcaa ctacaccccg aattacggta ccgaaaaaca tgggagcgtc tgtgatctat      4140
     cgataccata acgacatggg tcatttcggc gcagataagg tctgtgctga aatacgtcgt      4200
     ctcttttggt tccctgaaat gaaaaagaag gtccttgaac atgggaagtc gtgcattaca      4260
     tgtataacgt tcaatcctcg cgataagaaa tatgacggat atttgaataa catcgataag      4320
     ggcactattc ctttcgatac cgtccacgtt gaccacttag gtccgctaga aataacgaaa      4380
     agtaaaaacg tgcatatttt tgccgtaatt gatgtattca gtaagttcat taaactttac      4440
     gcgacgcggt ccacaaaaac ttatgaagtt ttgaaatcgc tgcgatccta catttcttat      4500
     tattcaaagc cacgaagaat catttcagac cgcggaactg cttttacgtc taaggaattc      4560
     gaatcgtttt gtgtaacacg cgggatagag cacgtgttga ttgcgactgg atgtccaaag      4620
     gcaaatggac aaattgagcg ttacaacaga acattagtac ctttgctagc taaattggta      4680
     gaagaaagga aaacgtcttg ggacaatgtt ctgttcgaag ctgaatacct tctcaataac      4740
     agttataatc gttcgatagc gaattctccg gcagttctgc tctttggtgt tagacagaga      4800
     aaccactttg agtcagatct agagcgattt ttagagaatc tcaacaaaga ggttgatcgc      4860
     gatattgact gtatcagaag cgatgctgta gagaagatta aacagctaca ggaatacaat      4920
     aagaaaaagt acgacgttaa atgtaaacga aataccgttt ttaaacaagg cgatttagtt      4980
     gcgatcagaa ctgtcaaagt atcaggcgag aatagtaagc tcaaggctaa gtatagaggt      5040
     ccgtatcaga ttaagagagt attagataac aatcgataca tcgttactga cctagaaggg      5100
     tatcaggtga caagtacgta cttcgacgga acttttgatc cacttaatct gcgactgtac      5160
     aagaaggctg ccactcgcga tactgagatt ttttcatcaa gctgttcatc cgaagattta      5220
     agtttcaaag ggtattctga agatgagtct gatttctacg ggtttcctga tgaggaatag      5280
     tccagtgatg tcattgccgt tgcgggtgta aatcaaaatt cgcaattcat ttggcaacca      5340
     tacttcagca atgaccgaac cactaaagtt tcacgcatta tattgattat ttttttgttt      5400
     aagtcatcag acagtgatta gattcctaac tcaagctatc gagggcgata gcagcaggac      5460
     ggccgagc                                                               5468
//
ID   Gypsy-111_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   supercont1.213;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-111_AA_;
KW   Gypsy-111_AA-I; Gypsy-111_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.213; Positions  720625  720417.
XX
SQ   Sequence 209 BP; 56 A; 51 C; 43 G; 59 T; 0 other;
     tgtagcagac gtaatttttg ctcgggctac caacagagct ccgacgtttt tgtagattaa        60
     ctacggccga ctctgctagt tgcacaatca tttgcaccgc accatcattg taattcgtag       120
     tgtcgaagag taaagacaat aaagcaatcg cagtaatttt gactaccgtt ctggtgtttt       180
     ctggccattc ccgcaagcac gcctaaaca                                         209
//
ID   Gypsy-113_AA-I repbase;    DNA;    INV; 5063 BP.
XX
AC   AAGE02027370;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-113_AA_;
KW   Gypsy-113_AA-LTR; Gypsy-113_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5063
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027370; Positions   98851   93789.
XX
CC   Positions [2217-2753] - Reverse transcriptase
CC   Positions [3852-4319] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..4850
FT                 /product="Gypsy-113_AA-I_1p"
FT                 /translation="MAQPSMATVIEPFRRGVSFADWVDRLEFFFQANGIGD
FT                 DLKKAHFITLGGSVVYKEIKLLYPNMNVSEISYADLIARLKTRLDKTESDL
FT                 IQRFKFNNRIQQPDESLEDFVLSVKLQAEFCSFGTFKDMAIRDRIVAGVRE
FT                 VALQQRLLNEENLTLAITEKIITTWEMAGANARSLGVAGNNLQTPGKTFQK
FT                 LLTTYAIANQNVEQVASVRGPVKNRLGRRPYDNYDNGRTNGRRIDNKWGES
FT                 SHSPEWKRNQIKKRPNYSGFTCDFCGAKGHIKRKCFRLKNLRRDAVNLVES
FT                 YKPGPTADSHLNEMLNRMTTHDTDSEEDDDNDAGEFSCMLVSSINKVSEPC
FT                 LLDLHIEGQLITMEVDCGSAVTVMSKGQYSSIINKPLRQCRKQLVVVNGSK
FT                 LQIEGEATVIVRYREVEAKLKILVLNCTHNFIPLLGRTWLDNFFPNWRQNF
FT                 LNPSKINSVTESHQGDQIEEIKQRFSNVFKKNFSMPIIGFEAELVLKDNTP
FT                 IFKKAYDVPYRLRDKVLNYLDKLEKENVITPVKTSEWASPVVVVMKKNNEI
FT                 RLVIDCKVSINQVIIPNTYPLPTAQDLFANLAGSKYFCALDLEGAYTQLAL
FT                 SRRSKKFMVINTIKGLYTYNRLPQGASSSASIFQQIMEQVLRGIVGVYVYL
FT                 DDVLIAGKDLNDCKRKLFLVLERLVEANIKVNWEKCKFFVKELIFLGHIIG
FT                 EKGLSPCVDKISTIQNASVPKNVTELKSFLGLINYYNKFIPHLSSRLYCLY
FT                 NLLKKDVKFVWSEQCQGAFERSKAALLETDFLEFYDPLKPIVVVSDASGYG
FT                 LGGVIAHIVDDIEKPISFTSFSLTDAQKSYPILHLEALALVCTVKKFHKYL
FT                 YGKKFSVFTDHKPLVGIFGKAGKNSIFVTRLQRYILELSIYDFDIYYRPSA
FT                 KMGNADFCSRFPLKQNIPKKYDVDRVCSINFGQEFPMDFAVIAKSTLDDGF
FT                 LQKVISFMKNGWPKRLERQFNDVFSNQHELEIFGDCLLYKDRVVIPQQLQI
FT                 DVLKILHASHLGIVKMKQQARRHVYWFGINSDIEKFVARCEVCSSMAIVPK
FT                 AKILSKWIPTTRPFSRIHVDFFHFNHRTFLLIVDSFSKWIEVEWMKNGTEC
FT                 SQVLLKLVELFSRFGLPDVLVSDGGPPFNSYGFKHFLEKQGIIVLKSPPYH
FT                 PPSNGQAERSVKTVKEVLKKFLLEPDLAELKLEDQINLFLFSYRNTALSDG
FT                 VYPSEKLFSYRPKTLIDLLNPKKDLKCFLSTPQANDEPVSSNETKPLRRID
FT                 QLDTLTEGDEVWYKNHNPNVSSRWLKAIYLKRFSINTFQIMIGNARIMAHR
FT                 DQLKARGSRDSSAPMRSNVLVPARVTEELPMGERRTEGDHGQLPVESYRSS
FT                 RKKKRDAQAAGLPDEQLRRSKRIKIVKRDNDFVYE"
XX
SQ   Sequence 5063 BP; 1615 A; 848 C; 1096 G; 1504 T; 0 other;
     taaaagttgg cgacgagaaa aagtgactta gtgaatttaa agtggctgaa gttatttgga        60
     atcgtacagt gaaactaatt aattgcgaaa ctagttcgag tgcatgcagg actgtattgg       120
     ttcagtgatt tcgcaccatt ttggtttaaa acgtgttctt ttgtacacca attgtagccg       180
     cgaataatag ctatgtgaac acacctattg ttcgcatcag aacccatata aattcctttc       240
     ttaaacgaca tatttgaaga ctgattggct tccaacaaat tattgtgtgg tattaagaga       300
     gtttcctttc tttcctacta tataggtttt ttaggcttgc atttccttcg tttgatgctt       360
     ggggactttt agaccatcaa ccgacagatt agtgacttga acctcgctgg tttttctgcg       420
     tgcatatcac catcatcgag ggtgcagcga ccggtacctg tcgtagattt tggtacggat       480
     acgtccggga agcggtgagc cgataacgtt gcatcaagaa gcgtccaata ggtttcaagg       540
     tcggccaagg tcgaagtgtg agctctggtg agtttttgaa tttcttattc atcctttgtt       600
     acggttcaat accttttgtt tgatacgtat tgtgggatat atagtatcca aagaaaatgg       660
     cccaaccaag catggctact gtaatagaac catttcgcag gggagtttcc tttgcggatt       720
     gggtcgatcg tttagaattt ttctttcaag caaatggtat tggcgatgac ctaaagaaag       780
     ctcacttcat cactctagga ggatctgtag tgtataaaga aattaaacta ttatacccaa       840
     atatgaatgt gagtgaaatt tcttatgcag atctgattgc caggctaaaa actagattag       900
     ataaaacaga atctgatttg atccaacgat ttaaattcaa taatcgtata cagcaaccag       960
     atgagtcgct ggaagatttt gttttatccg tgaaattaca agcggaattt tgttcatttg      1020
     gtaccttcaa agatatggca attagagacc gcatagtggc tggggtcagg gaagtggcct      1080
     tgcaacaaag attgcttaat gaagagaatt tgactttagc tatcacggaa aaaatcataa      1140
     ctacctggga aatggccggc gcgaatgcca ggagcttagg tgtggctggt aataatttgc      1200
     agactcctgg aaaaactttc cagaaattat tgacgacgta cgctattgca aatcaaaatg      1260
     tagaacaagt tgcttcagtc agagggcccg tgaaaaatag attaggacgg agaccttatg      1320
     ataattacga caatggtcgc actaatggca gaagaattga caataagtgg ggggaaagct      1380
     ctcattcacc agaatggaaa cggaaccaaa ttaaaaagcg tccaaattat tcgggtttca      1440
     cttgcgattt ttgcggtgcc aaagggcata taaaacgaaa atgttttagg ttgaaaaacc      1500
     ttaggcgtga cgcggttaat ctcgtggaaa gctacaagcc aggccccact gcggacagtc      1560
     atttgaacga aatgctgaac cgcatgacga cacacgacac agatagtgag gaggacgacg      1620
     ataatgatgc aggtgaattt tcgtgtatgt tagtgtcctc aatcaacaaa gttagtgagc      1680
     cttgtttatt agatttacat attgaagggc aattgattac gatggaggtg gactgtggtt      1740
     cagcagtcac tgttatgagc aaaggccaat attcttccat tattaataaa cctctgagac      1800
     agtgtagaaa acagctagtt gtcgttaatg gttcaaagtt acaaattgag ggggaagcaa      1860
     ctgtgatagt tcgctataga gaagtagagg ctaaattgaa aattttagtt ctaaactgta      1920
     ctcataattt cattccccta ttaggacgaa catggttaga caattttttt ccgaattgga      1980
     gacaaaactt tttgaatcca tcaaagataa acagtgttac tgagtctcac caaggtgatc      2040
     aaattgaaga aattaaacaa aggtttagca atgtttttaa aaagaatttt tccatgccta      2100
     ttattggttt tgaggcagag cttgtgctta aagataatac accaattttc aaaaaagcct      2160
     atgacgttcc ctacaggctg agggataaag ttttaaacta tttagacaag ttagaaaagg      2220
     aaaatgttat aacgccggta aaaacaagcg agtgggcttc tcctgtagtt gtggtgatga      2280
     aaaagaacaa cgaaataaga cttgttatag attgtaaggt atcgattaat caagttatta      2340
     ttccaaatac gtatccgctt cctacggctc aggatttatt tgcaaacctg gcagggagca      2400
     agtatttttg cgctcttgac ctggaaggag cttatacaca attagctttg tctagaaggt      2460
     caaagaaatt tatggtaata aacacaatta aaggtttata tacgtacaat agactgccac      2520
     aaggggcttc gtctagtgca tcaatctttc agcaaattat ggaacaagtt ttgagaggaa      2580
     tcgttggcgt atatgtgtat ttagatgatg tgttaattgc aggtaaagac ttgaacgact      2640
     gcaagagaaa gctctttttg gtattggaaa ggctcgttga ggcaaacatt aaagtaaact      2700
     gggaaaagtg caaatttttt gtgaaggaat tgatattctt gggacatatc ataggagaga      2760
     agggtttgtc tccatgtgtt gataaaattt caacaattca aaatgcctca gtgcctaaaa      2820
     atgtaacgga attaaagtca tttttggggt tgatcaacta ttataacaag tttattccac      2880
     atttgtcatc cagattgtat tgcttgtaca atttactgaa aaaagatgtg aaatttgttt      2940
     ggagtgaaca atgccaaggg gcttttgaac gaagcaaagc agcactttta gaaactgatt      3000
     ttcttgaatt ttatgaccca ttgaaaccaa tagtggttgt atctgatgcc tcaggatacg      3060
     gtctaggagg ggtgatagct catatagttg acgatataga aaaacccatt tcatttactt      3120
     ctttttctct gaccgatgca caaaaatcct atcctattct ccatttggaa gctttggctc      3180
     tggtttgtac cgtaaaaaaa ttccataaat atttgtacgg aaaaaaattt tcggttttta      3240
     ccgatcacaa gcctttggta ggcatttttg gcaaagcggg taaaaactcg atatttgtta      3300
     ctagattgca acggtatatt ttagaactct caatttatga tttcgatatt tactacagac      3360
     cttcagcaaa aatgggaaac gcggactttt gttccagatt tcctttgaaa caaaatatac      3420
     ctaagaagta tgatgtggac cgcgtttgta gcattaattt tggacaagag ttcccaatgg      3480
     acttcgctgt cattgcaaag agcacattag acgatggttt tcttcaaaaa gtaatttctt      3540
     ttatgaaaaa tggatggcca aaacgcttgg aaaggcaatt caatgacgtt ttctcaaatc      3600
     aacatgagct agaaattttt ggtgattgct tgctatacaa agacagggtg gttatacctc      3660
     aacagcttca aattgatgtg cttaaaatac tacatgcaag tcatttggga attgttaaaa      3720
     tgaaacagca ggctagacga catgtttatt ggtttggaat caactccgac attgagaaat      3780
     ttgtagcaag atgcgaagtt tgcagtagca tggcaatagt accgaaagct aagatattgt      3840
     ctaaatggat accaacgacc agaccattca gccgcattca cgtcgatttc ttccatttca      3900
     atcatcgcac attcttacta atagtagaca gtttttcaaa atggatagaa gtggagtgga      3960
     tgaagaatgg aactgaatgc tctcaagtat tgctaaaact ggtagaattg ttttcaaggt      4020
     ttggccttcc agacgttttg gtctctgacg ggggtcctcc cttcaattca tatggtttca      4080
     agcatttttt ggagaaacag ggaataattg ttctcaaaag tccgccatat catccgccaa      4140
     gcaatggaca agcggaaaga tcagttaaga ctgttaaaga agtactcaaa aaatttttgt      4200
     tggaaccaga tttggcggaa ttgaagttgg aggaccagat taatttattt ttattcagtt      4260
     atcgcaacac agctttgagt gacggtgttt acccctcaga gaagctattt agttatagac      4320
     caaagacctt gattgatctc ttaaatccta aaaaggacct gaaatgtttc ctatccacac      4380
     ctcaggctaa tgatgaacca gtttctagta atgaaaccaa accgttgaga cggattgatc      4440
     agttggatac attaactgaa ggagatgagg tgtggtataa gaaccacaat ccgaatgtat      4500
     cctcaagatg gttaaaagca atatacttaa aaagattttc aatcaatact ttccagatta      4560
     tgattggaaa cgctcgaatc atggcgcatc gcgaccagct caaggctaga ggctctagag      4620
     attcatcagc accaatgcga tccaatgttc ttgttccggc acgagtgaca gaagaattgc      4680
     caatgggcga acgacgaacg gaaggggacc acgggcaatt acctgttgaa tcctaccgaa      4740
     gtagcagaaa aaagaaacgt gatgctcagg ccgcgggact accggatgaa caactacgca      4800
     ggtcgaagcg aatcaagata gtgaaaagag ataatgattt tgtttatgaa taagtcgatt      4860
     gagccttcag ggaaggtgtt atgaatcgca aattataatt tcagatgatc tgatatcgaa      4920
     tagcataaaa tgaaatcgaa gttaattatc ctatattttg tattgcatat tgtattgatt      4980
     atttttgaca caagtcaatt cgaaatgtaa tttcgatact agtttgaaaa tctgattatt      5040
     gtttctcttc aaggggggag aac                                              5063
//
ID   Gypsy-113_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   AAGE02027370;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-113_AA_;
KW   Gypsy-113_AA-I; Gypsy-113_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027370; Positions   93788   93564.
XX
SQ   Sequence 225 BP; 60 A; 51 C; 47 G; 67 T; 0 other;
     tgtagtgtcc gctctacaga gccttcactg ttttgagaat atactgtggt cgaataccaa        60
     cacttgagta catgtagaac agtatagctg agatcggaaa taaactacat tcgatcgttc       120
     actttcgttt gtacagagct agaagataga cgtgttctcc tttttgcggc tgacaccgaa       180
     aacctcttac caatctaccc ttgcttgcgt tgtaagtgcc ggaca                       225
//
ID   Gypsy-114_AA-I repbase;    DNA;    INV; 5086 BP.
XX
AC   AAGE02027028;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-114_AA_;
KW   Gypsy-114_AA-LTR; Gypsy-114_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5086
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027028; Positions   68539   73624.
XX
CC   Positions [4106-4573] - Integrase core
CC   'ACTTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           877..2244
FT                 /product="Gypsy-114_AA-I_1p"
FT                 /translation="MRAKLLHFGGKQLQRVYENLPDADKLPLVSTKSNWYD
FT                 HAIAKLDEYFEPGRQYILERCRLRKMRQEKNERFAHFVLRIRQQLGDCGLE
FT                 KYPADVREVLTEIYVIDVIVEGCASEELRRRILQKDITLAEVESMGAMMEG
FT                 VEQQVNDFTCLNGNEQSREQQAEKVFRVQKRGPMKQPPVVPNRWPNRRMPQ
FT                 SREIKCFNCGTPGHIAMSVECKARNQTCRRCKRVGHFEAVCRKRFAPADVP
FT                 LHQKTKKVRLVEKIDQKPNDLPSTDSKLDSKSDTNGKSYYCFHFGNDTNIL
FT                 ECKIGGVLLDVLVDSGSDVNLIHSTAWETLKQQRVVVYEMQKGGDEVIKGF
FT                 GSKTPLNILGSFKAKIEIGNKSECAKFFVVKEGQRCILGDTTAKALGVLKI
FT                 GVEVNQVNNVPFGKIKDVQVQIHMDPTFKPVFQPVRRVPLPYESAVNQKLD
FT                 QLLDRDIIEVK"
FT   CDS           3125..5077
FT                 /product="Gypsy-114_AA-I_2p"
FT                 /translation="MNKFINNLATLDEPLRRLTEQSVKFEWTSEHQASFEA
FT                 IKNALSHSVSLGYFNVEHATSVIVDASPNALGAVLVQTDNFGEHRVICYAS
FT                 KSLTKTEKRYCQTEKEALAAVWGIERFQMYLLGKKFDLITDCKALLYLFTS
FT                 RSKPCARIERWVLRLQAFDYSIKHIAGEKNVADVLSRLATLVPTPFDYSEE
FT                 LFVNEIANAAATNAAIRWEELDAICNEDDEIQELLRKLEEGRLFELPAEYR
FT                 LIAQELCQVGNVLMRGDRIVVPKCLREKVLVLAHDGHPGTRMMKCHLRASV
FT                 WWPKIDTDVDTFVKKCRGCMLVSTPDPPEPMSRRDLPTGPWQDVAIDFLGP
FT                 LPEGQFLLVVVDYYSRYFEICEMTSITAESTIDELRTIFSRFGVPTTLTAD
FT                 NAPQLSEDCEQFAEFCRSYGIKLINTIPYWPQMNGEVERQNRTILKRLQIA
FT                 QELGQDWRIELQKFLLTYRASNHSTTGRSPAEMLFGRKIRTKLPQLSNSRY
FT                 DDEDVRDRDAMQKEKGKEYSDNKRRAKVRDLVVGDRVLLKRMKKDNKLSTE
FT                 YMNEEFIILRKCGSDLIVKSLVTGKEFRRNTAHVKKCEILNDAESSTGAMD
FT                 TEQDASETNTTSPNGGSSSNLDAQQSLADQGGKRKRKEPMWFEDYMPHFIK
FT                 KC"
XX
SQ   Sequence 5086 BP; 1591 A; 973 C; 1222 G; 1300 T; 0 other;
     tctggcgacg aggataatgg aaaaactagt aagtacagcg aaaactgcaa ttggaagcat        60
     attttatcac attgttttat aaggccacgc gagtcaactt tgacggggcg tagtcccgga       120
     ctaggaaaaa aaagaaagaa aaatgaaggt taggttatag aacaggtgtc gcatcagtta       180
     caactcacaa ggactgtttt gtatcttgaa tctggaatct tggacacgca caaatagaat       240
     gaagatttaa tatattgtct ctgaggagaa tacaagaaat gaagttatgg gtacaatttt       300
     atggaacttt gaggagttaa agaaaaaagt tctaaggaac tgctgttgag attactatac       360
     ttaaaagatt ggttccgaac tctgaggaga ttctgaggaa cttctgtcga gaaagttaaa       420
     tcaaagaata taagaaataa ttatgctgga gagcaaaagt ataactctga ggagttttgg       480
     aggttatcac tttgaaaagt gtgtgagatt aggctctgag gagttttgaa ggttataact       540
     ttgagaaata tgtgagatta agctctgagg agtttcttgt taactttctt gtgcgtgttc       600
     cgttagatga aaatattgcg gtatatcaga gcaggcagtg atattgtcac ttttatctgc       660
     aatacatgta acactacaac gagataataa tttggttttt gtgtaaaaag aactaaattg       720
     atcaaaatta taaatttaca gatcgacgag tctcgtccga ttcctccatt ccgatgtgag       780
     gagattggaa agaaccaatt ggccaaagag tggaagtgtt ggagatcggc tctcgagatc       840
     tatttcgagg cttatgacgt ttcggaccag aaaaagatga gagcgaagtt gcttcatttc       900
     ggtggcaagc aactgcaacg tgtttacgag aatctacccg acgctgataa gctacctctg       960
     gtatcgacca aatcgaattg gtacgaccat gcgattgcca agctagacga atacttcgag      1020
     ccagggcgcc agtatattct cgaacgttgt cgattgcgca aaatgcgtca agaaaaaaac      1080
     gaacgattcg ctcattttgt cttacgcatc agacaacagc tcggagactg cggtttagaa      1140
     aagtacccag ctgatgttcg cgaagtacta actgaaatct acgtaattga cgtgatcgta      1200
     gaaggatgtg cttcggaaga gcttcgtcgt cgaattctgc agaaggacat cacgttggcg      1260
     gaagtcgaaa gcatgggtgc catgatggaa ggagtggaac agcaggtcaa tgactttaca      1320
     tgtctcaatg gtaacgagca gtcgagagaa caacaggcag aaaaggtgtt cagagttcaa      1380
     aagcgaggac ccatgaaaca gccaccagta gttcctaacc gatggcccaa tcgtcgaatg      1440
     cctcaaagcc gagaaattaa atgctttaac tgtggcacgc cagggcacat cgctatgtct      1500
     gtggaatgca aagctcgaaa ccaaacttgt cgccggtgca agcgtgtcgg acattttgag      1560
     gctgtgtgca gaaaacgctt tgcacctgcg gacgtgccat tgcatcagaa gacgaaaaag      1620
     gtacgtctag ttgagaaaat cgatcaaaag ccgaacgacc tcccaagcac cgatagcaaa      1680
     ctggactcta aatcggatac aaacggaaaa tcttactact gtttccattt cggaaacgac      1740
     accaacattc tggaatgcaa aatcggtggt gttctgttag atgtgctcgt ggactcagga      1800
     tccgacgtta atttgatcca ctcgacggct tgggaaacct taaagcaaca acgagttgtg      1860
     gtttacgaaa tgcaaaaagg aggcgacgaa gttatcaaag ggtttggaag caaaacacct      1920
     ttgaatattt tgggatcatt caaagctaag atcgaaatcg gaaataaaag tgaatgcgcc      1980
     aagtttttcg tcgtaaagga aggtcaacgt tgtatcttag gtgatacaac cgcaaaagct      2040
     cttggagttt tgaaaattgg tgtcgaagtt aatcaagtga ataatgttcc atttggcaaa      2100
     ataaaggatg tacaggtaca aattcacatg gatccgacgt tcaaacctgt atttcagccg      2160
     gtgcgacgtg tcccactgcc ctacgagtct gctgtgaacc aaaaattgga tcaacttctg      2220
     gatcgagaca tcattgaggt gaaataattt cgtcaaatga tattcttttg ttaccatatc      2280
     agtctgaata atacatgata tttactcacc tatttttgaa taaataatta ttgattcgaa      2340
     tagggtaaca ctgaaatata caataagcta aatgttcttc agtaggtagt agcacacatc      2400
     cttacgttga atttgttgga aacactattt taggtcaaaa caggacctac aagttgggta      2460
     tcgccgctag tcgtggtagg caagtcgaac ggtgagccac gtgtatgctt agaccttaga      2520
     cgcgtgaacg aggcagtttt acgagaacga tatcccatgc cggtagtcga cgagttacta      2580
     gcacgcatcg gtaagggcgc aataagaagt agacttgata ttcgtgatgc atttttacaa      2640
     acggagcttg cccctgagtc acgtgacgtg acgacattca tcaccagccg aggtctcttt      2700
     agattcaaga gacttccatt tgggctggtt tcggctcctg agattttcca gaaggtgatg      2760
     gaagaaatct tggttggatg tgagggtaag tcatgttgag ttgttactta ttaaaaaaaa      2820
     aataaaataa aataaacatt gattaatagg gacggtatgc tacctggacg atatatacgt      2880
     tgaaggcgaa aacttagagc aacataatgt tcgcttaaac gcagtatacg aacgactgcg      2940
     agaccgtggg gtggttttga atcaagagaa gtgcgtgatc ggtgttccag aagttcaatt      3000
     cattggtcat gtaatttccc ccaatggtat acgtccttca ccatccaaag tcgaagccct      3060
     cgtatccttt aggcgtccgg aaaatgcgtc cgaagtgaaa agtttcctag ggcttgcaaa      3120
     ttatatgaat aaatttatca ataatttagc aaccctagac gaaccattgc gaagactaac      3180
     agaacaatct gtaaaatttg aatggactag cgaacaccag gcatcttttg aagccatcaa      3240
     aaatgcactt tcacactccg tcagtcttgg atattttaat gtggaacatg caacgtctgt      3300
     catcgtagac gccagtccta atgcattagg agcggtgcta gtgcagactg ataattttgg      3360
     ggaacaccgt gtcatatgct atgcatctaa atcgctgacc aaaactgaga aacggtactg      3420
     ccaaacggag aaagaggcgt tggcggccgt ttggggcatc gaaagattcc agatgtacct      3480
     tctcggaaaa aagtttgact taattaccga ctgcaaagcg ttgctatatc tattcacctc      3540
     acgctcaaaa ccatgcgcta gaatagaaag gtgggtgctt cgcctgcaag cctttgatta      3600
     ttcgatcaaa catatcgctg gagaaaagaa cgtagctgac gttctgtcac gtctggcgac      3660
     tctggtacca accccgttcg attattccga agagcttttc gttaacgaga ttgccaatgc      3720
     agccgccacc aacgcggcta ttagatggga agagcttgat gccatttgta atgaagacga      3780
     tgaaattcag gaactgctac gaaaactaga agagggtcgt ttgtttgagc ttccagcaga      3840
     gtatcgtctt attgcacagg agctttgcca ggttggaaac gttttgatgc ggggcgacag      3900
     aattgttgtt ccaaaatgct tgcgtgaaaa ggtactagtt ttggcacacg atggccatcc      3960
     tggaacacgc atgatgaaat gccatcttcg tgcttccgtt tggtggccca aaatcgacac      4020
     tgatgttgac acatttgtta agaaatgtcg gggatgcatg ctggtttcca cccccgatcc      4080
     acccgaaccg atgagccgcc gagacttacc aactggacct tggcaggatg ttgcgataga      4140
     ctttttaggt ccactcccag aaggacagtt tctactggta gtcgtggact actacagtcg      4200
     atactttgaa atatgtgaga tgactagtat cacagcggaa agtacgattg acgagttgag      4260
     aactatattt tctcgtttcg gcgtgccaac aacactaacg gcagataatg caccacaact      4320
     gagcgaagac tgcgaacaat ttgcagaatt ttgccgcagc tacggaatca agcttatcaa      4380
     caccattccg tactggcctc aaatgaacgg ggaagttgag cgtcaaaacc gaaccatcct      4440
     caaacgatta caaatagcac aagagctggg acaagattgg cggattgaac tccagaaatt      4500
     cctgctcaca tatcgcgctt caaaccactc cacaactggt cgctcgcctg ctgaaatgtt      4560
     gtttggaagg aagattcgaa caaaacttcc gcagctgtca aactcccgtt atgatgatga      4620
     agacgttcga gaccgtgatg cgatgcaaaa ggaaaaaggg aaagaataca gtgacaacaa      4680
     aaggcgggct aaggtgaggg accttgttgt tggggatagg gtgcttctta aaaggatgaa      4740
     aaaagataat aaactgagta cagagtatat gaacgaggag ttcattatat tgcgaaaatg      4800
     tggatcggat ttgatagtta agtcgctagt tacgggaaaa gaattcagaa gaaacacggc      4860
     acatgtcaag aagtgtgaga tattaaatga tgctgaatct tcgactggcg ctatggatac      4920
     agagcaagat gcatcagaaa caaatactac atctccgaat ggtggttctt catcaaatct      4980
     ggatgcacag caatcactgg cggaccaagg aggaaagcgg aagcgtaaag aaccaatgtg      5040
     gtttgaagat tatatgccac attttattaa gaagtgttaa ggggga                     5086
//
ID   Gypsy-114_AA-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   AAGE02027028;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-114_AA_;
KW   Gypsy-114_AA-I; Gypsy-114_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027028; Positions   68322   68538.
XX
SQ   Sequence 217 BP; 76 A; 28 C; 62 G; 51 T; 0 other;
     tgtagtggcg cacccctcgt gcaacgagcg taatgtagag ttcatatgta gagatagaga        60
     aaatggagag tagaaaggaa aagagaggag ggaagaggat tttgactgtg actatcaggg       120
     tgaacggttg taagcgggaa aagtaagttg tgaaattata tatttaaaac gcgaataaaa       180
     cgagtggatt tgctgctatt catccgaaac ctctaca                                217
//
ID   Gypsy-115_AA-I repbase;    DNA;    INV; 5115 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   06-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-115_AA_;
KW   Gypsy-115_AA-LTR; Gypsy-115_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-5115
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-MAY-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1006..2589
FT                 /product="Gypsy-115_AA-I_1p"
FT                 /translation="MPPFKIGADPRNDWIKWKRALERFLNANKVEQDEEKF
FT                 NLLLVLGGIDLQTYYDKVAKWEVQKTVDENEEVLEEVIVLKYESAILSLDE
FT                 YFAPQLKKRFERHILRSMRQNNQEPFEEFVYRLREQANRCIFSDVDDMIVD
FT                 QVIEGCSSTELRKRLLTTEMSLAEVISLGKTLEEVQKQTREYERPSTSHGE
FT                 SDLIQKVVGKVSFSARSADNNRKCYNCNRPGHLARDIEKCPAKNVECYGCH
FT                 TKGHFKICCRKRKHDEHANRRQVGAKRIHAIVENSNETDKGVFFVKSEEMT
FT                 EVLEMDVGGVLIKMIIDSGSPANIIDAKTYKRLKDQGAQIMNEREPQTNEK
FT                 TFKAFASDRDIFFNAVFETEIKIPGDETGIWSHVMVAPHGQVSLLSKGTAF
FT                 ALGILKIGYHVNSISARDRSNVEVQGHEEFPKIPDVKLPIQVDDSVPPVVQ
FT                 AVRRFPMSMEADVEKTIQDLLDKNIIERAEGPITWVSPLVPVRKSDGRIRL
FT                 CVDMRAANKAVKRENYPMPNIDDAMSGIKKVC"
FT   CDS           2655..5018
FT                 /product="Gypsy-115_AA-I_2p"
FT                 /translation="VAKLSKIDLEAAYYHFELDSNSRHITTFVARSGVYRF
FT                 CRLMFGIKSAPELFQREMENLFRGIKGLIVYMDDFLIYGETVEEHDETLRE
FT                 VLRRIKKFNMKINKEKSVFGVPSVEFLGHIVSVEGIRPTDGKVKAILDLQP
FT                 PSSVSELRSLLGLINFVGKFIPNLSAHTFNMRSLLNKGTLFIWKDKHSQEL
FT                 DAVKGMIASAGCLGFFDPNDETVLVTDASPYGLGAILIQTKDGVSRTISCI
FT                 SKSLAEFEQKYCQTEKECYAIIWAMEKLYVYLYGKHFTLVTDCKPLEYLFN
FT                 RVKSKPSARIERWILRLQSFDFTVKYEPGEDNLADSLSRLSQGVKDYSTRS
FT                 DVISWLADEIKPSVLSIEELEKATLADNDLQKVKEAIYSGIWDEVPNEFKT
FT                 ATVKDDLTLYGELILRGDRIVIPTALREKIVNLAHLGHQGGISMKALLRSK
FT                 VWFPFMDKLVDTIIRNCKPCKMTALPDKPNPMTRRIPTMPWQDLAIDFKEG
FT                 LPGEMSLLVVVCYTCRFVQVEPMKPATTQRVIGTLLRMFSAFGIPRSITSD
FT                 NGPQFRAIEFRNFCLSYGIHLNLSTPYWPEQNGAVERQMRNIGKRIKISII
FT                 QGTDWKADLYEYLTLYHSTPQEATGVSPGQMMFGREIRNRIPSIHQPPNLN
FT                 WESSRDRDMHQKEQHKLRADTSRQAKAHNLGRGDVVLMKNFKSGSYEPNFG
FT                 DEEFETIDVKGNEITVRSNRTGKVYRRNSSHLKKLLTAGSALFDENRSSNT
FT                 HLSITDRSVTSTEDQGKDNSSSKRISRRPVRFNDFVT"
XX
SQ   Sequence 5115 BP; 1616 A; 917 C; 1280 G; 1301 T; 1 other;
     atggcgacga cggtaaaaat aggtaagttt cgatcttctg agttgcaaaa ttggtgaaaa        60
     acgggagcga tactatggat aaaatgtgaa attaccaaaa atgtccgaat tggaattttt       120
     ctaccctgaa tgcttacggc gtggttagag cgaaaaaaaa acaagatggc gaacaaagga       180
     aaagaaatca acagtgaaaa ttaaaaggag aaaatggcgg cagtgagata atcagcattt       240
     tgaacatcta tctggatttt atggaagaaa aaaatatatc acttcgtgtg tgttaaacag       300
     cagaaaggca gagtggagaa ttcatcattt gttttttggg tgaaagattg tctccgtgac       360
     tagaggtaca aaggaacgct gcgtgcgaag aaaagtgtac ctcgttggaa aggccatttt       420
     gtgccaagct tcgtgctggt ggacgcttag tgcgaagtaa tgcttagtcc gaagtaacgc       480
     ttagtgtgaa gtaacgctta gtgcgaagka acgcttagtg cgaaggaacg cttagtgcga       540
     aggaacgctt agtgcgaagg aacgcttagt gcgaagaaac gcttagtgcg aagaaagctc       600
     agtacggaag aacgcttagt gcgaaggaaa cttactgtga atattttggg gaaatcggca       660
     gaaaatgcta cgtgctcgtg tacattgtgt cgaactgact gagtttattg catttgttga       720
     tcgatggaca caaattctgg agtgatgatg atcggttgag tggacatgtt attgtggatc       780
     ggagtggaaa ctcaattttt ggattacagt ggacgtagca aggtgatgtt tataaaacat       840
     aaataaaaga aatttgaaag acgaaagttt attgcaatgg atggaaacat aagatgctta       900
     aaaaaaagtc aagttattgg aaaatattcg ttgtgattta tcaagtggaa agaaactaag       960
     ggaggcatat tttttgtttt gtttttggtt atagatgcgt cggcgatgcc acctttcaag      1020
     ataggtgcag accccagaaa cgactggatc aagtggaaga gagctctgga acggttttta      1080
     aatgcaaaca aagtggaaca ggacgaagag aagttcaacc ttttgttagt tctgggaggc      1140
     attgatcttc agacatatta cgacaaggtt gcaaaatggg aggttcagaa aacggtcgat      1200
     gaaaatgaag aagttttgga agaagtgatc gtattgaaat acgaatcagc gattctctcc      1260
     ctcgatgaat actttgcccc acagttgaag aaaagattcg aacgacatat tttgaggtca      1320
     atgcggcaaa acaatcaaga accctttgaa gagtttgtgt atcgattgcg ggaacaagct      1380
     aaccgttgca ttttttccga cgtggacgat atgatagtcg atcaagttat cgagggttgt      1440
     agttcgactg aactccggaa aaggcttttg acgaccgaaa tgtcattggc tgaagtgata      1500
     tcactgggta agactttgga agaagttcaa aaacaaacga gagagtatga gagaccgtcc      1560
     acgtctcacg gagaaagtga cctaatccag aaagtcgttg gcaaagtatc attcagtgca      1620
     aggtcggcag acaataacag gaagtgctat aattgcaaca gaccaggtca tttggcaaga      1680
     gatatcgaga agtgcccagc aaagaatgtg gaatgttacg gttgccacac aaaaggccac      1740
     tttaaaatat gttgccggaa acgaaaacac gacgaacatg cgaacagacg acaggtagga      1800
     gccaaacgga ttcacgcgat cgttgagaac agtaacgaaa cggacaaggg agtgtttttc      1860
     gtgaagtcgg aggagatgac tgaagtactt gagatggatg tcggtggagt tctcataaag      1920
     atgatcatcg attcggggtc tccagcgaac atcatcgatg ccaagaccta caaacgtcta      1980
     aaggatcagg gagcgcaaat tatgaacgaa cgggagcctc aaaccaatga gaagaccttc      2040
     aaagcttttg catccgatcg tgatatcttc ttcaacgcag tattcgaaac ggagatcaaa      2100
     attccgggtg acgagacagg tatttggtct catgttatgg ttgctccaca tggccaagtc      2160
     agcttgttaa gcaaaggaac tgcttttgca ttggggattt tgaaaatcgg ctatcatgtg      2220
     aacagtattt ctgctagaga tcgttcaaat gtggaggttc agggtcatga agaattcccg      2280
     aaaataccgg atgtaaagct gcccatccaa gttgatgatt cggtcccacc agttgtgcaa      2340
     gcagttcgac gttttcccat gtcaatggag gcggatgtgg agaaaacaat tcaagatttg      2400
     ctggacaaaa acatcatcga acgagcggaa ggaccgataa cttgggtttc gccactggtt      2460
     cccgttagaa aatcggatgg tagaatcaga ctgtgcgtag acatgcgggc tgccaacaaa      2520
     gcggtgaaac gtgaaaacta cccgatgcct aatatcgacg atgcaatgtc cggaattaaa      2580
     aaggtatgct aataaataag aatgttgtag ttcgtagaaa acatacgtca tggtcttttt      2640
     tttatttcaa ttaggttgct aaattgtcca agatcgatct cgaggccgct tactatcact      2700
     ttgagcttga tagcaacagt aggcatatca ctacatttgt ggccaggagc ggggtataca      2760
     gattctgcag gttgatgttc gggatcaaat ccgccccaga acttttccaa cgagaaatgg      2820
     aaaacttgtt caggggtatc aaaggactga tagtttacat ggatgatttc ctaatttatg      2880
     gggagacagt cgaagaacac gacgaaactt tgcgtgaagt tcttcgccga attaagaaat      2940
     tcaacatgaa gattaacaaa gagaaatcgg tctttggagt acctagcgtg gagtttctgg      3000
     gtcatattgt gtccgttgaa ggtattcgtc cgacagacgg aaaagttaag gctattttgg      3060
     atttgcaacc accgtcctcc gtttccgaat tgagatcttt gttaggtctc ataaatttcg      3120
     ttgggaagtt tattcctaat ttgtcggccc acactttcaa tatgagatcc cttttgaata      3180
     agggaacctt gttcatttgg aaggataaac acagtcaaga gttggatgcg gtgaagggca      3240
     tgattgcaag cgcaggttgc ctcggttttt ttgaccctaa tgacgaaacg gtgttagtga      3300
     cagacgccag cccatacggt ttgggggcaa tactgattca gactaaagac ggtgtatcgc      3360
     gaacgatttc ctgcatatcg aagagtttgg ctgagtttga gcaaaagtat tgtcaaacag      3420
     aaaaagaatg ctatgccatc atatgggcca tggaaaaact ttacgtatac ctatacggta      3480
     agcatttcac gctcgtcaca gattgtaaac ctctggaata tctattcaac cgggtaaagt      3540
     cgaaaccatc cgcgcgtata gagaggtgga ttcttcggct gcagagcttc gattttactg      3600
     taaaatacga accaggggaa gacaatttgg ctgattcact ctctcggttg tcccaaggcg      3660
     tgaaagatta cagtactcgc tcggatgtca ttagttggtt agcagatgag attaaaccgt      3720
     cggttttgtc aattgaggag ctggaaaaag caaccctggc cgataatgat ctacagaaag      3780
     tcaaagaagc gatatactcg gggatctggg atgaagttcc gaatgagttc aaaacagcaa      3840
     cagtcaagga tgatttaaca ctgtacgggg aattgatatt aagaggagac aggattgtca      3900
     ttcccactgc gttgagagaa aagatagtca acctggcaca cctaggacat caaggaggaa      3960
     tatctatgaa agcactgctt agatccaagg tttggttccc attcatggat aaactggttg      4020
     atacaattat tcgcaactgt aagccatgta agatgactgc gctaccggat aagcctaatc      4080
     ccatgactcg tcggatacca actatgccgt ggcaagatct ggccatcgat tttaaagaag      4140
     gactcccggg ggagatgtca ctattggttg ttgtttgcta cacatgcagg tttgtacaag      4200
     tagaaccaat gaaaccggca acgacacaaa gggttatcgg aactctcctg aggatgttta      4260
     gtgcttttgg cattccccgg tcaattacat cagataacgg gccacagttt agagcgattg      4320
     agtttcggaa cttttgttta agctacggca tacacctcaa tctttctacc ccatattggc      4380
     cggaacaaaa tggggcagta gaaagacaga tgcggaatat tgggaaacga atcaaaatca      4440
     gcattattca gggaacagat tggaaggctg atctctatga atatttgacg ctgtaccatt      4500
     caacacctca agaggctaca ggagtgtctc caggtcaaat gatgtttggt cgtgagatac      4560
     ggaaccgaat cccgtccatt caccaaccac caaatttgaa ctgggaatct tccagagata      4620
     gagacatgca tcagaaggag cagcataaac tacgagcaga tacatcccga caagccaagg      4680
     cgcataattt ggggagagga gatgtagtgt tgatgaagaa cttcaagtct ggatcgtatg      4740
     aaccaaactt cggggatgag gaatttgaaa caattgacgt caaagggaac gaaatcactg      4800
     tacgctcaaa tcgaacaggt aaggtgtatc gacgcaacag ctcccacctc aagaaattgt      4860
     tgacagcagg ctcagcactt ttcgatgaga acaggtcttc taatacacat cttagtatta      4920
     cggatcgctc ggtgacctcc actgaagatc aggggaaaga taacagttcc tcaaaacgaa      4980
     ttagcagacg accggttagg tttaacgatt ttgtaactta gttaatgtaa cagtttgaga      5040
     ggatatcaat aaaatgtttg taacacttgt aatatggatc ttaagatata ttatgaatcc      5100
     aaaatatggg aggag                                                       5115
//
ID   Gypsy-115_AA-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-115_AA_;
KW   Gypsy-115_AA-I; Gypsy-115_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  473009  473266.
XX
SQ   Sequence 258 BP; 68 A; 49 C; 80 G; 61 T; 0 other;
     tgtaacgatg tatggtttca tcgagtcgcc aacggtcaag ttgaactacg tacgctttca        60
     gtgacgggta tcaggaatga cagcttgaaa gaagaatgta ttggtacatg catgacgaaa       120
     ccgtgtgtgc gtgggtttac tcgggtacgg caaaggtgct gccgaacacg agcgtcattc       180
     gtggtacagc agtgtagcag aacagacggc tgagctcgag tgtgaagcgt aacgagggct       240
     aattattcgg ctggtaca                                                     258
//
ID   Gypsy-116_AA-I repbase;    DNA;    INV; 7030 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 24.03, Created)
DT   24-JAN-2019 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-116_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7030
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7030
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 453-453 (2019).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7030 BP; 2004 A; 1563 C; 1593 G; 1862 T; 8 other;
     tttgacgatc caacggaaaa ttggcctaca gttttctgaa agttgatttt tttcattgga        60
     cgttgaggga agttcctttg gtgtttgact agagaaaaaa atcaactctc aaattgcgaa       120
     atttwataat ttggttcaca ctgcttcatt cgttggtggt atcgcatttc actacccact       180
     atccgttgat tcattgggca gcgtagagta tactcgtgcg cgcgcatata gctaggttat       240
     aacaaatttc tatagagtgg aagataaaag gcacaccagc agtagccaaa aaagttgttt       300
     gtcggccgag ctgagtcagt gtcaaggcaa tagttgtttt tcaaatttct accgttcctt       360
     ttttgcatga tcgttcctgc aacaatatcc aatagaatat tcaatttgat tcagggttgt       420
     agtttagagg tttgagaaga gcwctgattt tggmaaaatg agctacgatt tcgagaaagc       480
     gtaccaaaat gaaatgtcgg ttacatttct aaccgatgat gaattgaaat tcgagttaga       540
     gattagaaat atgcatttcg atagacagag tgctatcaca gttcagcgta ggaaactgcg       600
     aaatgcgata cgggaagagg tagaagggct ccagcgtgta ttcgtgtacc atcggagagc       660
     gcgcgaagag ctgagtattt gtcagcgtag gttggagaga gcgtgggtag agctccagtt       720
     ggaagatgtt gtaaaggaga tgtcgaaaac gggattatta cacctgtaca accgtttaaa       780
     gttgttgaag agaacatatg ccactcgaga ttgcgttaat gaagcaaatt ggatcttttc       840
     caatgtggtc caaacttatk taamkaattt cgtggaggat gttcgtttac caactctccc       900
     cgactcgccg aatttagttg atttggaagg tgcagccagc ctaggagctc gggcagcatt       960
     agaaagtgat ttaataaatt tagcgccacc tgtaggggca gaagcgaatt tagcaacacc      1020
     ggttagctcg atgcagagcc gatcggagca aaacgtttta ggatatgtca atttacgttc      1080
     gaattcaatt ggtgcggttg aaacggattc gcgagtgtac gatcgagtcg aagtggtgcc      1140
     ggttgtgacc aatgccggag cgattccgcg aagcacacgt tctgatgttc cgtcgacagt      1200
     agtagtttcg tcatcgttgc ctacgatggt gactacgtca tcgacaagtg tttcttacgt      1260
     gagtgttact tcattaggac agatgcctcc catctggtcc actccgcggt atcaagtgtc      1320
     gtgcagtgtt caacaatcgc ggcatgttcg gtttgattca gtgcgttctt tggaagagga      1380
     tccaaacaat ttgatttcat cagcacctga aatccgcgtg tccagaccag ctgtgtctga      1440
     tactcccaga gtcagtgaga tatatcgtag tgaaccgttc gtgttttcac gctgggacga      1500
     atttcgtgag aaccttccca ccggttcaat acgaaacatc gatcgtcctg aaccaaggat      1560
     gagtcaccca agtgaatatt ctcaagctcg acctcagtgg tccgatcctt gtgaattttc      1620
     gcatattcca caccaaccct cacagagcaa tgcgaatttt tcgcaaacaa atcaatatga      1680
     cattcgtcat catggtgctc ggaattatga caattttgga ggtaactccc agtttaaccc      1740
     ttttatttca caaaggaact atgtgccgtt accttcacag ccagcaccgt attctatctc      1800
     acagccaatg cggagcgcgg cctattcagt gccccatgct ccccaacagg gattttacag      1860
     tagtgatctt cccgctgttg gcctgtcggg aacaagctgg agaacacccc ctcctccagt      1920
     gcacactccc gctcctagca taaatccttt cgaagagttg gatttcaatc caacggccaa      1980
     ccgagtgaaa acaattccgg ttgtgaaatg gcctatgaga tatgcaggtg aagaccgtgg      2040
     aatgggttta aacgactttt tgtgggaggt gagtgattgg acgaagtcag aacaaatatc      2100
     tgaatatgag cttctgcgct catttgggaa tttactgaca ggtcgtgcca aattgtggtt      2160
     cactagtaat aagcaccgat tcaatacgta ttcggagctc attgctaatt tgaagctgac      2220
     ctttaggcat ccagacctgg atcattttat tttactggac atttaccaga agaggcagca      2280
     gaaaacggag acatttttgg aatttttcct agacattgaa aagaaattca aaagtctcac      2340
     agcccctgtg tcggagatcg agattgtaca agctgtgcga cgcaatctcc gtccagaata      2400
     caaacgtgca ttaattggta gagagctgta tgacctgtat tcattacaga tggcaggaca      2460
     ggaaatagac gctaccaata catatttgtt tgtaaaacca caaaattcct cacagactaa      2520
     tgcggttcag gttgctgaaa aacgttccgg ggggaataat aaccagtcag gaaaaggtcc      2580
     gaatccgaac cattttcaaa ataagggtcc gaataataac ccaaattaca cgccacgcca      2640
     gggttatggg cctaatcaag gaagcggagg tggaaagcag tggacgcgaa aggaacccgg      2700
     cacaggaaat cctaatgcca aggttccgaa taaaattgcc actgacgaga agaagacatc      2760
     cgctaacaac gttaaaggtg attcgaaaac accaatgaac atggagtcta aaacacaaga      2820
     cttcactcca ctcaatgacc aatttgtgtg tttcaattgt cgtagtcaag agcatctgac      2880
     acaccagtgt acgaagccgt acaaggtaca ttgtcaggtg tgtgggttca gtggttttcc      2940
     aacccatcgt tgtcccttct gtgcaaaaaa ctctgcgcgc cggagggaga ccggcccagc      3000
     gaaagagcac tgaatacaat cgatgaaatt ctatttgcgc ttgggtacga gccgatgctc      3060
     aacggcgacg ctctgtccaa accagacttg aacccgaact ccattctctc tgtgttaact      3120
     gacaaccgac cattcataaa tatatctgtt ttcggtcgtt ctgttaaggc gcttctagat      3180
     agtggcagcc aaaagacctt actttccgat aaaacatcgc ccatctggag gttgtcaaac      3240
     actaaaatct tcccttcaaa tttgactcta acaagtgctt ctggcgaccc cttgcaagtt      3300
     actggtcgag tttacctccc attcacagta ggggataaaa ccagagtcat ggaaaccact      3360
     attgtagaag atctacctgt cgattgtatc gcagggatag acttctttga tgcattcgac      3420
     attcacattt caatggacaa tatgtttttg ttccagataa atgctgaaga atgcctcaca      3480
     tcctctcctg atctcgtcga gcttagctcc gagcaggatc gagagataga acatgtcaag      3540
     agactcttca agcccgctat gtcagaccag ttagagataa cctcgctggt ccaacacact      3600
     atagaactga aagacgaatt taagagcgcc gctccaattc gtgtaacacc cttcccatac      3660
     tctccatcca ttcataaagc acttaacgaa gagatcgatc ggcttctcgc tctcggtatc      3720
     atcgaagagt caaactctga ttgggctctt aatgcggtac cgataaaaaa gccgaacgga      3780
     tctattcggt tatgcctcga tgcgcgtaag cttaacgcgc gaacaaaacg tgatgcgtat      3840
     cctctcgcac acgtggggag aatactggga cgattgggaa aaactcgtta tttgagcaca      3900
     atcgacctta aagacgcttt tctccaaata cctttaagtc cagaatcgaa acctctgaca      3960
     gcgttttgta ttcaaggcag aggtatgttt caatatactc gcctcccctt tggtcttacc      4020
     aatagtccgg ccacactttc caggcttatg gataagatac tcggggcggg tgcattagaa      4080
     ccccagattt tcgtgtacct cgacgatatt atcgtcgcca gcgaaacctt cgaggagcac      4140
     atcaagcttc tcgaggaagt agctaggagg ctgcgagagg cgaatctatc gattaaccta      4200
     caaaaatcgc aattttgccg ttcagaggtt ccgtttttag ggtacctcct ttctcgcgat      4260
     ggtctcaaac ccgatccctc gaaggtacaa gcaattttag atttcgaagc tccaaaaacc      4320
     gtccgccaaa ttcgccgttt cttgggaatg gtaaattatt accggaggtt tattggtgac      4380
     tttagtgaaa tcaccgctcc gatttcagac cttttggctg gaaaacctaa gattgttcga      4440
     tggacgaagg aagccgaacg ggccttcaaa acaataaagg aacgacttat cactgctcca      4500
     atcctttcca atcccgactt cgatatggag ttcactgtac aaacagacgc cagtgaccgt      4560
     gcagtcgccg gagtgttgac gcagcttcaa gagggttcag agagagtgat aagctttttc      4620
     tcgcaaaagc taaattccgc ccagcagaac tactccgcca cggagaagga agctttagcg      4680
     gcgcttcttg cgattgacaa attccgtggt tacatcgaag gatcacactt caccctagtc      4740
     acggacgcgt cggcccttca atacatccgc aacaacaaat ggcgccctgc ttcacgattg      4800
     agtcgttgga gtctagatct tcaacaccta gacatgacaa tagtgcaccg taagggttca      4860
     gaaaacatag tccccgatgc actatcccgt agcatttgct ccgctagctc gtctgaatcc      4920
     cgagtatcct ttgatgagtt gatacgaaag gttcaggatg accccgagca atattcagac      4980
     tttcggttcg aggaagacca attgtggaaa tacgtcggcg ttgatgatga acccttcgac      5040
     gtaaggttcg agtggaagtt ggtccctcct cctgcgaacc gaaaccaaat catcgagaaa      5100
     gaacatgtgg aaagttttca ccttggggtg gagaaaaccc tgtctcgact aaaactccga      5160
     tactactggc cgcatatggc gtcggatact agaaaattcg tccagaaatg ccaaacctgc      5220
     aaagaaagta agccagcata cgtacccaca ataccgacta tgggaaagca gaaagtggca      5280
     gaccatccct ggcaaataat cgccatggac tatgtgggtc cactgcctaa aagtaaatca      5340
     ggatacatgc atatcctkgt tatacaagac ttgtttagca agtggtgcca actgcatccg      5400
     atgcgacgaa tagagtcagg aagtctgtgc aagactttaa gagaaggttg gtttcttcgg      5460
     aattccatcc cggaaatagt actaacagat aatgccagca cattcctatc caaggagttc      5520
     aaggctttgt tagataggtt tgaaatcaag cattggacca ccgctaggca ccacagccaa      5580
     ggaaacccag tggagaggct gaacaggtca ataaacgccg caattcggac ctactgcaag      5640
     caaaatcaac gttgctggga tctgaacata ccagacattg aacatgtgtt taacaacacc      5700
     gttcattctg cgacgggatt tacccccttt tttataaccc acaaccacga gatcgctgtg      5760
     actggcacag atcaccaacg aatacgtcga aaggaagact attcatccgg gttatgtgct      5820
     gatgagcaaa agcgaatcag tggtgaaatt tacgacctcg taaagaaaag cttgttaaag      5880
     gcgtacgaaa caagtgcgaa ccgatacaat ctccgaaaaa gagctcgccc tgaagagttc      5940
     aaaccaggac aattgatcta ccgtcgtaat tttaaagcct ctaatgcggg agagtactac      6000
     aacgcgaagc ttgccccaat gtaccttcct tgtcgtgtcg tcactaagca tggaagcagt      6060
     tcctacgagc tggaagacga aaatggtaag agtataggag tatggccagc tgagcatctc      6120
     aaaccctgaa ctctctcgaa tcatgtttat ctctcatagt ttgttgttat ttcattcatg      6180
     ttattaattg gttcattaag ctagcctccg atgagaggac aagcttttac ttcctcaccg      6240
     atccactggt gaattttctc tctcatgagc tctgagagag attaattgca tgctgtggat      6300
     ttgttgtttc tactctgtga tgtccagtgt ctctctcagc aggagtaggg tgttwaggat      6360
     aaagcatagg agaaacaacc gttcaaaaag aagcaaaaag gcttctcatt aaaaatctcg      6420
     cgcgagtatt actgaatgat ctcaggatca aatgttgatc acattcatat ggccggccaa      6480
     ccattatgtg tacttaacaa tgaatagatc gttagaatcc aggtgtgtct ttcggcaggg      6540
     aagatagtta actagggatt cctaatgcat cataagaagt gaccaggggg atgtttgtat      6600
     catcttccga ttgcaagcag cgtgaaccaa aagtgtttga taattgtatg tccacctttg      6660
     tgaacttcat ttgttcggtg tttgtttagg ttgtaagaag gtatgaggac ctactagctt      6720
     agggttaatt cgttgaccag cgcagctctc tttgagtgca gagcattacg agtgttcggg      6780
     gagtccgacc agaaaaaatt tggacccacc gtgatggcgt gccagatcac gggagtcccc      6840
     caaatgcgcg aaccccaact cgagcacttt ataaataaac aatttgttcg atttgtaata      6900
     ataattattt tgtttccatt agttgttttc gttaattcgt tattatttat tatatttgtt      6960
     cattggtttt ttctttgctt attcaaaaaa atatatttca tacatttttt ttattgtgcc      7020
     ccgggggaaa                                                             7030
//
ID   Gypsy-116_AA-LTR repbase;    DNA;    INV; 791 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   24-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-116_AA_;
KW   Gypsy-116_AA-I; Gypsy-116_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-791
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1003-1003 (2011).
XX
RN   [3]
RP   1-791
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
DR   [3] (Consensus)
XX
CC   >98% identicla to the consenssus.
XX
SQ   Sequence 791 BP; 218 A; 180 C; 220 G; 169 T; 4 other;
     tgttacattt ctaatgtacc ataaaattcc acaaaacaaa aataaccata catacaatcc        60
     aataaaaact aaatttatta ttttgaaaaa actcgcctat caacacgccg tcggaaaaac       120
     gtctcaagct cagtatcccc cgctgttcta aaaccccact cgcgatacga ctacggatgg       180
     gcgaaaatgg gaaggtcaaa aagtttagac catgcgacgc kgtttccgac tcgatcgggg       240
     ggatagaaga tcgctctctt ggtgcttgtg gctcgtgcga atacggacgt gtttggcgac       300
     cggttaaagg ataccggata ttcggtgtgc gtagccacct gagaagtgag tccaagtggg       360
     tctttgataa gacccaagtm gcctaattgk gccgcggaga agattagttg aacggagtgg       420
     agtgaatagt tacccgggag tgcccagcgc agtcgagaag tgtcagggac cacgtgaaaa       480
     ggccctgagg cgcgaccgcg cgtttctggc gtgccccgaa attggccagt gtggtgtacc       540
     ggtggaggaa gaaacgaagc ctctaaacga gaccccaaac ccgaaattag tgtgggagta       600
     gtgcggtgag gcaakttcgc tggcccgctg aattgaagtg cccgcgaggt gaagtggtgt       660
     gagcgaaagg cgtccagcat ccggcggctt aggccgtcgt aacgttagag aacgtaggct       720
     aggcagcccc tggggaataa aaaggtaagt ctgcatgctc tctttggcct ttggcaaacc       780
     cataacttat a                                                            791
//
ID   Gypsy-117_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   supercont1.60;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-117_AA_;
KW   Gypsy-117_AA-I; Gypsy-117_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.60; Positions 2742616 2742820.
XX
SQ   Sequence 205 BP; 64 A; 39 C; 37 G; 65 T; 0 other;
     tgtttctctc actaaacaca gatgtcacca tagagaataa gctattgtaa ggaatatcta        60
     ttgtctactg tgtagacttc ctgtacatat tgcctataaa tgatgtatga accctagaat       120
     agctctctca gtcctagacg atccaccgga ctgtaaatat agattagaag tggaagttct       180
     ggtttttcta tagtaagtcc gaaca                                             205
//
ID   Gypsy-118_AA-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-118_AA_;
KW   Gypsy-118_AA-I; Gypsy-118_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-295
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 1139590 1139296.
XX
SQ   Sequence 295 BP; 74 A; 69 C; 66 G; 86 T; 0 other;
     tgtgggtgtt gagatcttct gaaatataat tacttctcgc cctttagctt caccgcagta        60
     cgaagtcata tatcttgcaa cacattttat tgaatgtgta gccaacagtt gagaaacaac       120
     atgatcagct tggagtgtca ccgcatcagc ccaccctgcc ttagtcggat agcaacgaca       180
     caaccagcat tgattgtcgt gcggtgagtc gccagtcttc ggtcgtcggt catataggta       240
     agtccaactc gcggttttgg gcgattcttt tgaacgccaa taatggattt tcaca            295
//
ID   Gypsy-119_AA-LTR repbase;    DNA;    INV; 1107 BP.
XX
AC   supercont1.245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-119_AA_;
KW   Gypsy-119_AA-I; Gypsy-119_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.245; Positions 1156443 1157549.
XX
SQ   Sequence 1107 BP; 319 A; 259 C; 198 G; 331 T; 0 other;
     tgtaacctct caaaatggtt acatttgtct ttttgttaat attccctgta aatagttttt        60
     ctttgtacat tattattatt attattatta ttattattct tattattact cttattatta       120
     tccctatcat cattattatt tttcttatta ctacccttat tactattatc atttgtatta       180
     aaattatggc tgctaaagat ataatgaatt taaaattgaa atatttaaaa tagaatataa       240
     actgaaattg aatagaaaga aatatcgaat ttatccccat acctgaacat ccccatcctt       300
     attcccattc tactaccatc cctattccca ttctactacg acacaccacc gctaccagcg       360
     acaactgtca cgacgttggt agcaaatcga aagcagcgag gaaataaaac cgtttgtcaa       420
     cagacgaacg gtctctaata gtgaactgaa aagccccgat gtgccccatt cattgttctt       480
     ggtccggtcg gctagtgtcc agtagtggaa tccagaaagc ttgtgagaat ccgtgcgccg       540
     ctagttcgga acaagttcat ccggcacgaa ggaccaccca gtgtgagcgg ccgcgagaat       600
     agtttggtcc ggccagcgaa gtggttaacg gcctaccagc tgaagaatcc gtcacgtccc       660
     ctgagtgcga agaactccac tgccactgaa gacaccattt tcatccgtcc aggacaaagc       720
     taacaccgcg gtggatggtg ccgggaccag cagcgccttg gtagacggtt caggccccat       780
     aagaagctgt gtggtaatgt aaatcctatt ttccttcctt ctttgtaaga taaaatgccc       840
     ctaattaaaa cgaatcttat aatcaaattg agaacttttg aatattgcta gcaaagccct       900
     gtatttcctc catctcctcc agatttcggt tctgtccacc tcgacaacgt aaattttgac       960
     gtaggactac gtttgagttt ttttaaaggg aagtttttcc gcccatctcc ccaatttcct      1020
     cttggagcaa tttgaaacga ccctgaggcc caggacaaaa gcccggttgg ggacaataga      1080
     ggttcccaac ctaaagaatc tctaaca                                          1107
//
ID   Gypsy-11_AA-I repbase;    DNA;    INV; 4341 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_AA_;
KW   Gypsy-11_AA-LTR; Gypsy-11_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4341
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 991-991 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3276-3758] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..1910
FT                 /product="Gypsy-11_AA-I_1p"
FT                 /translation="MATADAKMNPSISSAGVQAGTPKTLNFGVFENYVAGD
FT                 DFEVYEERMTQHFLLHDVPEERKVAFLLTHLGMDTYAILKKLLQPVNPSTK
FT                 RYEELVLTLKRHFRPEVNKVSERYRFHQADQKAGQSVTEYVVELKALVEKC
FT                 EYGEFLKEALRDRFVFGIFDGRLRTHLLKQKDVSFDKAVEEALTWELAEKD
FT                 NKVREGNFSAHVVRSNKPWRARSKSRSRFHDDKKMQPRRNKLCDKCGREHE
FT                 PGKCPAKNWKCYSCGKQGHAASMCYAKVSKQNRSSSQEPRKIQTVGTVGSG
FT                 DELALELANLRMQLNSLQDKSFLLERSGVMVETLFVEGQPVDFEVDSGACA
FT                 TVISSSLYRKQFSHLQLFGVRNDFSTVTGEGLKIIGGISAQVSKDRSGPSK
FT                 KLVLVVIESEKSFRPLLGRTWMDVLWPSWRSSLKQGNVSINSFDRSIFDSI
FT                 RVKYPNTVSDVNSPIRDFEAEIVIESNVTPIFHAAYSPPFQQRPAIEAELN
FT                 RLCDENILKRVQHSRWASPIVVVPKANGKLRLCIDCKVTINPFLRSEHYPL
FT                 PRIDDLFAKLANCKVFCVIDLRGAYQQLRVSENSQQ"
FT   CDS           3126..4298
FT                 /product="Gypsy-11_AA-I_2p"
FT                 /translation="MLHANHDGIVRGKMLGRSLFWWKNMQGDIENYFKNCE
FT                 ICDQRRNVPTEKVTSKWPKTSCPMDRIHIDFFAFEGKTFLILVDSFSKFIE
FT                 AKLMSSTNADQVNEKLEDFFKFFGLPKEIVSDNGPPFNSFDFVNHWETRNV
FT                 KVTKSPVYHPQSNGTAERGVQTVKNFLKKRLLDQQLNSKNLSRKLNEILAW
FT                 YNSTPTTVTSLSPSELILRYRPRTVLTGINPKANSSVEQSNRNTRQVRFDE
FT                 SKNETIVYDAGNRKIATDKEIPEKQFKKGERVMYRNHLKEVVRWIPVVVID
FT                 KIGKFLYKIKFIENGNIRIVHVNQLRHKNSFIESNLTKLPEKFVDQSRCKR
FT                 RRSDSGNGIHAPTPKYLKRRSESMSDELMLRRSARESRPPVRFGFDEL"
XX
SQ   Sequence 4341 BP; 1314 A; 737 C; 1115 G; 1172 T; 3 other;
     tagtaaattt tggcgacgag tttgtggaag cagtgagtgc tgtcgtgaag cgcaatagtc        60
     gaacacgtgg tgtgacgcgt acggaagata gtagcggcgt tagaagaacg atcgttagtt       120
     cggcgcgagt gaagtgaaca cgtgattggt ttgaggttag gatggctaca gctgatgcga       180
     agatgaatcc gagtatttcg agtgccggag tgcaagcggg aacaccgaaa acgttaaatt       240
     tcggagtgtt cgagaattac gtcgcgggtg atgatttcga agtgtacgaa gaacggatga       300
     cccagcattt tctccttcat gatgtgccgg aagagagaaa ggtggcattt ttgctcacac       360
     atttgggaat ggacacgtac gcaatcctga aaaagttgct tcaaccagtg aatccgagta       420
     cgaaacggta tgaagagcta gtgttgacct tgaaacggca tttcaggcca gaagtgaaca       480
     aagtgtccga acgttatcgc tttcaccaag ccgaccagaa agctggacaa tcggtgactg       540
     aatatgtagt ggaattgaaa gcgttggtag aaaagtgcga gtatggtgaa tttttgaaag       600
     aagcgttgcg ggacagattt gtgttcggga ttttcgacgg taggttacgt acacacctgc       660
     tgaaacaaaa agatgtgtcc ttcgacaagg ctgttgaaga ggcattgacg tgggagttgg       720
     ccgaaaaaga caacaaagtg cgcgaaggta actttagtgc ccacgtggtg agatcgaaca       780
     aaccgtggcg agcaagaagc aaaagtcgat cgcggtttca tgatgacaag aagatgcagc       840
     cgagaagaaa caaattgtgc gataagtgcg gtcgtgaaca cgagccagga aagtgtccgg       900
     ccaagaactg gaagtgctat tcatgcggaa aacagggcca tgcggcgagc atgtgctatg       960
     cgaaagtgtc gaagcagaat cgtagttcga gtcaggagcc ccggaagatc caaaccgtgg      1020
     ggacggttgg ttccggagac gagttggcat tggagttagc caatttgcgg atgcagctga      1080
     attctctcca ggataagtcg tttttgttag aacgtagtgg tgtgatggta gaaaccttgt      1140
     ttgttgaggg ccagccagta gattttgagg tagatagtgg tgcttgtgca acagtaatca      1200
     gtagtagctt gtatcggaag caattttctc atttgcaatt gtttggtgtg aggaatgatt      1260
     tttcaaccgt aaccggtgaa gggttaaaaa ttatcggtgg aatcagtgca caggtgtcta      1320
     aggatagaag tggtccgagc aaaaaattag tgcttgtggt gatcgagagc gaaaaatcct      1380
     tcagaccgct tcttggacgg acctggatgg acgtactatg gccaagttgg agatcgtcgc      1440
     ttaagcaagg taatgtgagt ataaactctt ttgatcgctc aatttttgat tcaatacgcg      1500
     ttaagtaccc caataccgtc tcagatgtaa attctcccat ccgtgatttc gaagccgaga      1560
     tcgttattga aagcaatgtg actcctattt ttcatgcggc atactctcct ccgttccaac      1620
     agcgaccagc gatagaagct gagctgaatc gtctctgtga tgagaatatt ttgaagagag      1680
     tgcaacacag tagatgggcc tctccgattg tagttgttcc aaaggcaaat ggcaaattga      1740
     ggttatgcat cgattgtaag gtaacgatta atccgttttt acggtcagag cactatccgc      1800
     taccgaggat agatgatctg ttcgctaagt tagcgaattg taaagtgttt tgcgtgattg      1860
     accttcgggg tgcataccaa cagctcagag tctcagagaa ctctcagcaa twcttaacaa      1920
     ttaacacaca tgttggattg tttcagtatt tgagattgcc ttttggagtg gcaagcgcgc      1980
     catccatatt ccagagcata atggaccaga tattgggtga tattgaaggt tgtgggtgtt      2040
     atttggatga tgcattgatc ggtgcagaaa gcttagagaa atgtaagcaa attttggatg      2100
     tcgtcttagc acgtttgaac cattacaatg taaaaatcaa tctagataag agtcgatttt      2160
     tcgcgagttc cgttgattat ttagggcata cggtttccgg agatggatta aagccgaata      2220
     aaagtaaagt cgacgcgatc gtgaacgcgc cagcgcctaa aaacgtgact gaattgcagt      2280
     cgtatcttgg tttactgaac tattatgcga agttcatacc gaatatttcg tcggaattgc      2340
     gagttttgta tcgtctacta cggaaagatg aacgtttcgt ctggactcaa gaatgtgagg      2400
     acagtttcgc gaagagtaag caactgattt tgaacaataa cgtgttacag ttgtacgatc      2460
     cgcgaaaacc gatagtcgtc gcggcagatg ctagccccta cggtgtggga gcagttttat      2520
     cgcatatcgt tgatggcgaa gaaaagccgg tattgtttgc gtcgtgtaca ttatctccag      2580
     cggagaagaa ctattcacaa cttcatcgag aaggtttagc gattattttt gcggtgaaac      2640
     ggtttcacaa atacatttac ggtcataagt tcaagcttat ttcggattgt gaagcgttaa      2700
     aagaaattta ccatccacga aaaggtacgt cgattgtagc gacatcgcgg ttacagagat      2760
     gggcggttat tttatcaatg tatgaatacg awttcgaata caggccaaat cggtgtttgg      2820
     cgaacgcgga cgcgttatcg agattaccgg ttccgggaag tacggaaatt gaagaacttt      2880
     cgatcaacag actggaaagt tgtccagatc tgccgttgaa aacgcgagac gttgcagatt      2940
     ttactgctaa ggatcaagtt ctttctcaag tttacggatt cgtgatgcgc ggttggccgc      3000
     gaagtgtacc ggaamatttg aaatattatt ataaccttcg aaattcgtta aattcgcagg      3060
     acggatgttt gttttacggt gatcgtgtag taataccgaa attgctacag tcaatcgttt      3120
     tgaagatgtt acatgcgaat catgacggta tcgtgcgagg caaaatgcta ggtagaagtt      3180
     tgttctggtg gaaaaatatg caaggtgaca tcgaaaatta tttcaaaaat tgcgagattt      3240
     gtgatcagag gcgaaatgta ccaactgaaa aggttacatc aaagtggccg aaaacgagtt      3300
     gtccgatgga taggatccac attgatttct ttgcgttcga gggtaaaaca tttttgatac      3360
     tagtagattc tttttctaag ttcatcgaag caaagttaat gagtagtact aatgcagatc      3420
     aggttaatga aaaactagag gatttcttta agttttttgg actgccaaag gagatagttt      3480
     ccgacaacgg acctccgttt aattcgtttg atttcgttaa tcactgggag acgcgaaacg      3540
     tgaaagtgac taaatcgcca gtgtaccatc ctcagtccaa tggtacagct gagcgtggtg      3600
     tacaaacggt taaaaatttc ttgaaaaaac gcctgttgga tcaacaattg aattctaaaa      3660
     atttgtcgcg gaagttgaat gaaatactcg cttggtacaa tagtactcca acaaccgtca      3720
     catccttatc acctagtgaa ttgattttgc gttacagacc ccgtacagtt ttaactggga      3780
     ttaacccgaa agctaattct tcggttgaac aatcgaaccg aaacaccaga caggtaagat      3840
     ttgatgagtc caaaaatgag acaattgtgt acgatgcagg taacagaaag atcgcaactg      3900
     ataaagagat tcccgagaaa caatttaaaa aaggggaaag agtaatgtat aggaatcatt      3960
     tgaaggaagt tgttagatgg attccagtag ttgttatcga taagataggg aaatttttgt      4020
     ataaaattaa atttattgag aatgggaaca tcagaattgt acatgtaaat cagttgcggc      4080
     acaagaattc ttttatcgaa tcaaatttga ctaaattgcc agaaaagttc gtagatcagt      4140
     ctagatgtaa gcgtagaaga agtgattcag gaaacggaat tcatgcacca acaccaaaat      4200
     atttgaaaag aagaagtgaa tcaatgagtg atgaactaat gcttagaaga tcagctaggg      4260
     aaagtagacc tccagtaaga tttggatttg atgaattgta attagataag tatgtagttc      4320
     agaatcaaaa aaggggaaat t                                                4341
//
ID   Gypsy-11_AA-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_AA_;
KW   Gypsy-11_AA-I; Gypsy-11_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-248
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 992-992 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 248 BP; 83 A; 58 C; 37 G; 70 T; 0 other;
     tgtagtgtac cttatagata gtatccttgc taatatcaaa ataatatcgt ttactcgtca        60
     gtaggtatgg caaaggtcaa agctaacaat cccctgacca tgtaattgtt acccatataa       120
     aagatcgatc aaccattgta tctttctctt tattcgctca ctcctcgagc ctacaacatc       180
     agcacggaat aaatagtaag tagaatccta aaccagtgtt tgaacccaac ccacgtgatc       240
     cgaaaaca                                                                248
//
ID   Gypsy-11_AnFu-I repbase;    DNA;    INV; 4349 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4349
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2896-2896 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           318..4331
FT                 /product="Gypsy-11_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQMEKIAEMVNEYTRAGLVKRCESRGLSIVGMKEDL
FT                 AKRIAEHDSTEDANETMFEDVETDDKTVTTMVKPEPCVEKRVYSFRDVEEA
FT                 IDSYGDDVKKDVKLWIREFEDIAKMVKWTDDQKFVMCRKKLIGTARSFVQT
FT                 QEGITCYDMLRNALIREFGKLVRASDVHRELAARRKRENETMLEYTYAMQR
FT                 IAQVVRLDEVSLCEYIADGATRDTSERALLYEAKDIETLKNKLEFMERANK
FT                 KVGARKKESYKNDSVRQKNNCFNCGSAEHKLATCPTKNKGPKCFQCGNIGH
FT                 RAAECKEKRNTEKKGVKCFACGEYGHIDKECTKRNAKNENTNVHVTETQKD
FT                 STIPLVIGKNEFSALFDSGSEHNIITEMVYQKIGCPDLVSTNVRFRGFGGM
FT                 LTVAQGKFTVNISIDAENYDDCLFYVVSDGCMGYDVILGRESLKYFDAEVT
FT                 LEGIKVVPRKACSEMMAIDTGGSEELQIPPRYVESVKQMIKNFKATNVIDI
FT                 KSEVRIQMKDDIPVRSNPRRLAPLEKDVVKKQVNEWLEEGIIQQSYSPYAS
FT                 PVVVVPKKDGSYRVCIDYREVNKKIIRDQYPMPNLEDQIDQLADARVYTTL
FT                 DLKNSYFHVGLEEKSRCYTAFVTMDGQYEFLRTPFGLCVSASAFGRFIGTV
FT                 LRELIQEGVIMVFVDDIIIPSRDEEEGLSRLKRVLEVAMAAGLQLNWKKCV
FT                 FLQRRVEYLGYMVHDGRIEPAPQKVSKMQNFPVPKTRKQLQRFYGLANYFR
FT                 KFIPSFSLMMQPLSTLLKAGKEFMFNDEALRAFTTVKSKLSEYPILLIYKQ
FT                 GRETEVHTDASKDGLAGILMQYDDKDKKAHPCYYYSRLTNSAEKNYHSFEL
FT                 EGLAVVEAVKKFRCYLLGCKFKIVTDCIALKQALAAKTINARAARWWVMLS
FT                 EFEYEIEHRSAERMQHVDALSRANILMITATIHDGLIKAQTRDENVKAIRD
FT                 AIESGIEKEKFVVHNGVVYREESGKRKIVVPKAMESSIIRESHEQGHFGLK
FT                 KMKENLSLEYYIPNVESKIQDCIANCVRCIVSERKRGKPEGELRPIPKGDT
FT                 PLDTFHIDHLGPMPSTRKSYNYILTVVDAFTKFVWIFPTKTTNTDEVLRKL
FT                 EMISNTFGDPRRIISDRGTAFTSGAFEQYCKGRSIELHHIVTGVPRGNGQV
FT                 ERIHRIIIPVLTKMAVEKPEEWFKYVNRVQVAINNSWQRAIRMTPFELLVG
FT                 TKMRTKGDIEINQLLQEESQKQFQDDRKELREIAREGIQKIQDENRKTYNL
FT                 RRRVVDEYNVGDYVAIPMTQVGVGRKVKQKYFGPYKISRILANGRCEVQKV
FT                 DENQEGPRTTTTTKDMLKRWARLGQA"
XX
SQ   Sequence 4349 BP; 1481 A; 692 C; 1145 G; 1028 T; 3 other;
     tgggggctca accgggatca gtacaagata agtacaasat cagtatcaga tctcgatagg        60
     aaataatttg gtttaatgct gtgagttctg tcaaggatcg tgatagaaat tcgagtgatt       120
     gtggatgatc acgtcgaatg tgcagtwgca gttttgtgtt gcaaagttgt gaaagtgttt       180
     gcagtcgtgg tgcaaagacg ttgtaaagtt gttgcagtta ttattgcaaa gacgttgtaa       240
     agttgtgctg tgttgtaaag mtagtagagt gcgatcgtcg gaaatcataa gtagaaaggt       300
     ttacgaaaaa gcgcaccatg gatcagatgg aaaagatcgc ggagatggtg aacgagtaca       360
     ctcgagccgg tctcgtgaag cgatgtgaat cacgtggatt gtccatcgtg ggtatgaaag       420
     aagatctcgc taagagaatc gcggagcatg actcgacaga ggatgcaaac gagacaatgt       480
     tcgaggacgt ggaaaccgat gataagaccg tgacgacaat ggttaaaccg gaaccttgcg       540
     tggagaagcg tgtttattcg tttcgcgacg tcgaggaagc aattgattcc tacggggacg       600
     acgtgaaaaa ggacgtgaaa ttgtggattc gcgaattcga agacatagcc aaaatggtga       660
     aatggacgga tgatcaaaag ttcgtcatgt gccgtaagaa gttgatcgga accgcgcgta       720
     gttttgtgca aacgcaggag ggaataacgt gttacgacat gttgcgaaat gcattgattc       780
     gtgaatttgg gaaactcgta cgcgctagtg atgtgcaccg agagttggcc gctaggcgga       840
     agcgagagaa tgaaacaatg ttagaataca catatgcaat gcagcgtatc gcccaagtcg       900
     tgcggttgga cgaagtgagc ttgtgtgagt atatcgcgga tggagcgacc agagacacta       960
     gcgagcgcgc gttgttatac gaagcgaaag acatagaaac gttgaaaaat aagcttgagt      1020
     tcatggaaag agccaataag aaagtgggcg cgcgaaagaa ggaatcgtac aaaaacgata      1080
     gtgtgcgtca aaagaacaat tgttttaact gtggtagcgc agaacacaaa ctagcgacgt      1140
     gtccaacaaa gaataaagga ccaaaatgtt tccagtgtgg taacataggg caccgagctg      1200
     ctgagtgtaa agaaaaacga aatacggaga aaaaaggtgt gaagtgtttc gcatgtggtg      1260
     agtatggaca tatcgacaaa gagtgtacga agcggaatgc gaagaacgaa aacacgaatg      1320
     ttcacgttac agaaacacaa aaggacagta caattccttt ggttatcggg aagaacgaat      1380
     tcagtgcgtt gtttgacagt ggaagtgaac acaatataat aactgaaatg gtgtaccaaa      1440
     aaataggctg tccagacttg gttagcacta atgttcgttt tcgtggattc ggaggaatgc      1500
     tgacggtagc gcaaggaaag ttcacagtga atatttctat cgatgccgag aattacgacg      1560
     attgtttgtt ttacgtggta agcgacggat gcatgggata cgatgtgatc cttggaaggg      1620
     agtcgttgaa atactttgat gccgaagtga ctcttgaagg aataaaagtt gttccccgaa      1680
     aagcatgtag tgaaatgatg gcaatcgaca ccggtggatc agaagaactg caaataccac      1740
     cacgatacgt agaatcggtg aagcaaatga tcaagaattt taaggctaca aacgtaatcg      1800
     acataaaatc ggaagtacgt attcagatga aggacgatat accagtgcgt tcaaatccaa      1860
     ggcgattagc gccgttagaa aaagacgtgg taaagaaaca agtaaatgag tggttggaag      1920
     aaggaattat tcaacagtcg tacagcccgt atgcaagtcc cgtggtagta gtgccaaaga      1980
     aagatggaag ttaccgagta tgcattgact atcgtgaagt gaataaaaag atcattaggg      2040
     atcaataccc gatgccaaac ttggaggatc agattgatca gcttgcggat gcgcgtgtat      2100
     atacaacatt ggacctgaaa aattcatatt ttcacgtcgg acttgaggag aaaagtcggt      2160
     gctacacagc gttcgtaaca atggatgggc aatatgagtt cctcagaacg ccatttggtt      2220
     tatgtgtgag tgccagtgcg tttggaagat tcatcggtac ggtgttgcga gaattgatac      2280
     aagaaggcgt gattatggta ttcgtcgatg atatcataat accatcccgt gatgaggagg      2340
     aaggattaag ccggctgaaa cgagtactgg aggttgcgat ggcagcagga ttgcagctaa      2400
     actggaagaa gtgtgtcttt ctacagcgac gagtggaata cttgggctac atggtccacg      2460
     atgggcgtat agaaccggcc ccgcagaagg tgtctaagat gcagaatttt cctgttccga      2520
     agacaagaaa gcagttgcag agattctatg gattagcaaa ttattttcgt aagtttattc      2580
     caagcttttc gttaatgatg caaccgttgt caaccttatt aaaagcagga aaagaattca      2640
     tgttcaatga tgaagcgttg cgcgccttca ccacggtgaa aagtaagttg agtgagtatc      2700
     cgattctttt aatatacaag cagggacgcg agacagaagt acatactgat gctagtaagg      2760
     atgggttagc tggaatactt atgcaatacg atgacaagga taaaaaagct cacccatgct      2820
     attactatag tagactaaca aactcagcgg aaaaaaatta tcactcattt gaactagaag      2880
     gattggctgt agtcgaagca gtaaagaaat ttcgttgtta cttgctcgga tgcaaattca      2940
     agattgtaac ggattgcatt gcgttgaaac aagcattagc agcaaaaaca ataaatgcta      3000
     gagctgcgag atggtgggtc atgttatcag aatttgagta cgaaatagaa catcgatctg      3060
     cagaaagaat gcaacacgtt gatgcattat ctagggcaaa tattttgatg atcacagcca      3120
     cgatacatga tggattgata aaagcgcaaa cacgagacga aaatgtcaaa gcaataaggg      3180
     atgcaattga aagcggaata gaaaaagaaa aatttgttgt gcataatggg gtagtttaca      3240
     gagaagagag tggtaaaaga aaaatagttg taccgaaggc aatggaatcg tcgatcataa      3300
     gagaatcaca cgagcagggt cattttggac ttaaaaagat gaaggagaat ttatcgcttg      3360
     aatattacat acccaatgtt gaaagtaaaa ttcaagattg tattgcgaat tgtgtaagat      3420
     gtatcgtaag cgaacgcaaa cgtggaaagc ccgaaggaga attaaggcca ataccgaaag      3480
     gagatacgcc gttagataca tttcatatcg atcatctagg gccaatgcca tcaacaagaa      3540
     aatcatataa ttacatactt acagtggttg atgcattcac gaaatttgtg tggatattcc      3600
     cgactaaaac gactaatact gatgaagtac tacggaagtt agagatgata tcgaatactt      3660
     ttggcgaccc gagaagaata attagcgata gaggtaccgc gtttacttca ggagcatttg      3720
     aacaatattg taagggcaga agtatcgagt tacatcatat cgtgacagga gtgccacgag      3780
     gaaatggcca agttgagaga atacaccgta tcataattcc agtattgacg aaaatggcag      3840
     tcgaaaagcc ggaagaatgg ttcaaatatg ttaatagagt gcaagtagcg atcaataata      3900
     gttggcaaag ggctattcgt atgacaccat tcgagttgtt ggtaggtacc aaaatgagaa      3960
     caaaaggcga tatcgagata aatcaattgt tacaggaaga atcccaaaaa caatttcaag      4020
     atgatagaaa ggaattacga gagattgcgc gcgagggaat acaaaaaata caggatgaga      4080
     acagaaaaac ctataatttg cgacgtagag tagtggatga atataatgtt ggcgattatg      4140
     tggcaattcc aatgacacaa gttggagtag gaagaaaggt taagcagaaa tactttggtc      4200
     cctacaaaat atcaagaata ttggcgaatg gaagatgcga ggtacagaaa gtcgatgaga      4260
     atcaagaagg accacgtacc actactacta cgaaagacat gttaaaacgt tgggcacgct      4320
     tggggcaagc gtgatgtcag gagaggccg                                        4349
//
ID   Gypsy-11_AnFu-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-216
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2824-2824 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 216 BP; 85 A; 35 C; 59 G; 37 T; 0 other;
     tgtaggagag gaagagaatt tagaaggtga gagggagaga gaatcaagga ggaaaaggac        60
     cacacgacat cgcccaagcg taagccataa aacgttatgg caactattgt ataaaaagag       120
     cggagaggat acgcggcagg acagtggtcg aaatacgata gccgcgttgt gacgaactaa       180
     aagaactaat aaactgaact aaattacttt cctaca                                 216
//
ID   Gypsy-11_AnMe-I repbase;    DNA;    INV; 4332 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4332
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6823-6823 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..4273
FT                 /product="Gypsy-11_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPDGEEPKPSTSGLGHIKMAMSMFGHMEPFVVGENFD
FT                 EYENRLKQFFIVNDVEEGKKVPMLVTMAGPSLYSMASRICSPDDPCSKSYK
FT                 DLIKLLKQHLAPKVNVVAERYKYRKCEQAIGQTITEFIIELKASSQSCDFG
FT                 TFLQQALRDQFVAGVHNSGLRTKLLTEEGLTFEKACEIGRSWEAAEHECKE
FT                 MQGASKLATLKPRTAWKPSEKMPAKQNRKGTTHAGSKPSSERDKNCFRCGR
FT                 AHNPESCPAKQWTCYACGKVGHVSSLCRSKNKKNRVAELVDATEQMNLNQL
FT                 KDADDTSKPTTCQNEKFTGTICSASGASSTRTDIPATMELQIEGVMVCFEV
FT                 DTGACESVISRETYEEKLSHVQLRKTTKVFQTVSGQTIRPKGELLVQVRNR
FT                 YGNFVWLNIFVLEPEKNKVLTPLLGRSSLDIIMPEWRKLVSLNFSSIDAIQ
FT                 HNFKSEIQHKYPYVITGDASQAIEGFTADIILKQDAVPIFHKPYTVPFKFR
FT                 EKVEKEIDSMVESGILVPVRTSTWASPIVITPKKDGTIRICLDGKATLNRF
FT                 ISTEHYPLPAIDDILANLSNFIYFCKIDLTGAYLQVRLSNSAQELCTVNTH
FT                 RGLFKYTRMPFGISSAPSVFQSIIDQILLGTKAIPYLDDILIGGSTISECK
FT                 ENLFQVLFKLNKHKVQINWAKSRFFQTEIEHLGFMLTSEGIRPCKGKVEAI
FT                 CLAPAPKDIGQLQSFLGLLNYYHRFLPNLSSELHPLYNLLKRDSKFTWSNE
FT                 CETAFKKCKELLVSNDVLEPYDLKKPLILTTDASPYGVGAVLSHIVDQVEK
FT                 PVYFASSTLTSAQINYGQIHKEALAVVFGVKKFHKYLYGTSFTLVTDSSSL
FT                 RQIFNPHKGSSAVAISRLHRWAVILSNYSYNVVHRPGKGISHADALSRLPL
FT                 PIKNRIEHISVADNNLQQFIGVEEIEEEQHKDAVISNIINWTINGWPKEVV
FT                 EEMKPYSKMVQNFEVENNCLYFEDRVVVPKSLQSRVLQKLHENHDGVIRMK
FT                 MIGRSYFWWKGFDKDVLNTLKSCPICQKTQRVPKETVTSSWPSATHAFERI
FT                 HLDLFYFDRNTFLIVVDAYSKFIDVKSLRKTCTESVLERLDEIYTYFGFPN
FT                 EVCSDNGPPFNSSGFIEACKANNIKVLKSPPYHPQSNGLAERGVQTIKKVL
FT                 KKYLIDERLKQIPLQKKINKILFNYRNTPSTSTGKTPSSLLFSYVPRTLLN
FT                 TSNPVKLSIQNDKRCVTILPKTNCIPKQVSPTHTYSRGDKVFYRNHMEEYV
FT                 RWIPAVVLEKISPNTYLINLQGNVRMVHTNQIRFSELADQYHPTLPLIESN
FT                 SVPETVPITNQVPSIPLAKQKIRTTKRKRSKSSSPKLRRSKRIKDRQRRNS
FT                 KRNFGL"
XX
SQ   Sequence 4332 BP; 1439 A; 811 C; 941 G; 1141 T; 0 other;
     cagttttggc gacgaggata taaggtaaac gtgtgaaacc tctctctaat cagtcgtgcg        60
     ttttgatcaa cgtcggatca aatcgttatc agtcggtcag tcagtcgatc tcgtgtctga       120
     gattagtgcg gtgtagtgtt gtgttagtgt gcagaggcaa cttaggatgc ccgacgggga       180
     agagccaaag ccgtcaacgt caggcttagg gcatataaaa atggcaatgt caatgtttgg       240
     ccacatggaa ccgttcgtcg ttggtgaaaa tttcgacgaa tatgaaaatc gcctgaagca       300
     gttcttcatc gtaaacgacg tagaagaagg taaaaaagtg ccaatgctgg ttacaatggc       360
     gggtccatca ttatattcca tggcatcacg aatatgttcg ccagatgatc cgtgttctaa       420
     atcgtataag gacctgatca aactgttgaa acagcactta gccccaaaag ttaacgtggt       480
     ggcagagcga tacaagtatc gcaaatgcga acaagcgata ggtcaaacaa taacggagtt       540
     tattatcgaa ctaaaagcgt cctcacaatc ttgtgatttt ggaacgtttt tgcaacaagc       600
     gctacgcgat caattcgtag caggggtgca taactccggg ttgcgcacta aactccttac       660
     cgaagaaggt ctcaccttcg aaaaagcgtg tgagattggc agaagctggg aagcggcgga       720
     gcacgagtgt aaagagatgc agggagcatc aaaactggca acgctaaagc cacgcacagc       780
     ttggaagccg tcagagaaaa tgccagctaa acagaataga aaagggacaa cgcatgcggg       840
     atctaagcct tcatcggaac gcgacaaaaa ctgttttcga tgtggtaggg ctcacaaccc       900
     agaatcttgt cctgccaaac aatggacgtg ttacgcatgc ggaaaggttg gtcatgtgtc       960
     atcgttgtgt cggtcaaaaa acaaaaaaaa tcgagtggct gagctcgtgg acgctacgga      1020
     gcagatgaac ctgaaccagt tgaaagatgc tgacgataca tcgaaaccaa caacgtgcca      1080
     gaacgagaag ttcaccggta cgatttgcag tgccagcggt gcgagttcaa cgcgcacaga      1140
     tataccagcg acaatggagc tgcaaattga aggtgtgatg gtgtgtttcg aggtagacac      1200
     cggcgcgtgc gaatcggtga tatcgagaga gacgtacgag gagaaactct ctcacgtgca      1260
     gttgcggaag acgacaaagg tgtttcaaac ggtgtcaggg caaactattc gtccaaaagg      1320
     agagctacta gtacaagtga ggaacaggta tggcaatttc gtttggctaa atatttttgt      1380
     tctagaacca gaaaaaaata aggtgcttac accactcctc ggtcgctcaa gtttagatat      1440
     aatcatgcca gaatggagaa aactggtaag tctcaatttt tcgtctattg atgctattca      1500
     acacaatttt aagtctgaaa ttcaacacaa atacccatac gtaattacgg gggatgccag      1560
     tcaggcaatt gaagggttta cagcggatat aatccttaag caagatgctg tacccatatt      1620
     tcataaacca tacactgtac cgttcaaatt tcgtgaaaaa gtagaaaagg aaatagatag      1680
     catggtggaa agcggaatct tagtcccagt acgtacgtcc acatgggcta gtcctatagt      1740
     aataacacca aaaaaggatg gaacaattcg aatttgttta gatgggaaag ctacattgaa      1800
     tcgatttatt tccacggaac attatccgtt gccggctatt gatgacatac tagccaattt      1860
     gtcgaatttt atttattttt gcaaaatcga tttaaccggg gcttacctac aggtacgttt      1920
     gtccaactca gcgcaagagt tatgtaccgt aaatacccat cgaggattgt tcaaatacac      1980
     aagaatgcct tttggtataa gttcagcgcc gtctgtattt caatctataa tagatcaaat      2040
     actactcggg acaaaagcta ttccttattt agatgatatt ctaattggtg gaagtaccat      2100
     aagtgaatgc aaagaaaatt tattccaggt gttgtttaaa ttaaataaac ataaagttca      2160
     aattaattgg gctaaatcgc gatttttcca aacagaaatc gaacacctcg ggttcatgct      2220
     aacaagcgag ggaatacgtc catgtaaagg taaagtggaa gcaatctgtc ttgctccagc      2280
     acctaaagat attggtcagt tacagtcatt tttaggtctg ttaaactact accacagatt      2340
     tttgccgaat ttgtcatcgg agttacatcc gttatataat ttgctaaaga gagatagcaa      2400
     attcacatgg tccaacgagt gcgagacagc gtttaaaaaa tgtaaggagc tcttggtttc      2460
     taacgatgtg ttggaaccct acgatctaaa aaagccactt atactaacaa cggatgccag      2520
     tccgtatggg gtaggtgccg tgttatcgca catagtggat caagtagaga agcctgtgta      2580
     ctttgcctca tcaacactaa caagcgcgca aattaactac gggcaaatac ataaagaagc      2640
     tttagcggtt gtgttcggcg taaaaaaatt tcataagtat ttgtatggta cgagttttac      2700
     tctcgttacg gacagttctt cgctgaggca aatttttaac ccacacaagg gatcgtccgc      2760
     tgtcgcaatt tctagattgc acagatgggc agtaattttg tcgaattatt cctacaacgt      2820
     ggtacatagg ccaggtaaag gtattagtca tgccgatgca ttatctcgtc taccattgcc      2880
     aatcaaaaat cgtattgagc acatatcggt tgcagataat aacctgcaac aatttattgg      2940
     tgtggaagaa atagaggaag agcagcacaa ggatgctgtt atcagtaaca ttattaattg      3000
     gactataaat ggttggccaa aagaagtagt agaagaaatg aaaccgtatt caaaaatggt      3060
     acagaatttt gaggtcgaaa ataattgtct ctattttgaa gatcgggtag tagtgccaaa      3120
     gtcactacaa agtcgagtgt tacaaaaatt gcatgaaaat catgatgggg ttataagaat      3180
     gaaaatgatc ggtcgatcat atttttggtg gaaaggtttt gacaaagatg tactaaatac      3240
     acttaaatct tgccctattt gtcaaaaaac tcaaagggta ccaaaagaga cagttacatc      3300
     aagttggcct tcagctacac atgcctttga acgcattcat ttggatttat tctattttga      3360
     ccgaaatact tttttgatag tagtggatgc ttattcaaaa tttatagatg ttaaatcatt      3420
     acgtaaaacg tgtaccgaga gtgtattgga gcgtttagat gaaatctata cgtattttgg      3480
     gttcccaaat gaagtgtgtt cggacaatgg tccacccttc aactcctcag gttttataga      3540
     agcctgtaag gcaaataata taaaggtgtt gaaatctcct ccttatcacc cccagtcaaa      3600
     tggattagcg gagaggggag ttcagacaat taaaaaagtg ttgaaaaagt atctgattga      3660
     cgagcgattg aaacaaatac cacttcagaa aaaaattaac aaaatactat tcaattatcg      3720
     caatactcca tctacatcta ctggtaaaac tccttcttca ttattattca gttatgtgcc      3780
     acgcacatta ttaaatacga gcaacccggt taagctatct atacaaaatg ataaaagatg      3840
     cgtaactata cttcccaaaa cgaattgcat acctaaacaa gtaagtccca cgcatacata      3900
     cagccgcgga gataaggtat tctatagaaa ccatatggaa gaatatgtta gatggatacc      3960
     agcggtggta ttagagaaaa taagcccaaa cacttatttg attaatttac aaggcaatgt      4020
     gagaatggtt catacaaatc agattcggtt ttctgagctt gcagaccaat accatccaac      4080
     ccttccgtta atagaaagta attcagttcc agagacagtt ccaattacta atcaagtacc      4140
     aagcatacct ttagcgaaac aaaaaataag aactaccaaa agaaaacgaa gtaagtcttc      4200
     ttcacccaag ttacgcaggt caaaaagaat caaggatagg caaagaagaa atagcaagcg      4260
     taattttgga ttataagagt agtctgtaat ccttaaaaaa atctctaaaa tgtcatttaa      4320
     agctgcgaga ag                                                          4332
//
ID   Gypsy-11_AnMe-LTR repbase;    DNA;    INV; 175 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-175
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6848-6848 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 175 BP; 62 A; 28 C; 30 G; 55 T; 0 other;
     tgttatatag tgaactacta ctaatacgat atgaactata ttagtataag ttagaatagt        60
     aatgtgagtg cagactgttt ttggctattg ttagaattag tataaaaggg gctcaatcct       120
     catctcgaga ttcattcccc gacagtacgt cgaataaaca catttaaaca caaca            175
//
ID   Gypsy-11_AnSt-I repbase;    DNA;    INV; 4051 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4051
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 794-794 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..3994
FT                 /product="Gypsy-11_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEEEKKKNSVCSSLPVEEKFIKMNNPTHNVYIEPYNK
FT                 EVLSWKRWVKRLETAMEMMDLQPEKKKPVLLHYMGMECYNTLCDLALPKEP
FT                 EGLTYQEVVDKLTSHYEPRPLEMVELFKFWQRKQQEGETVAEYAKVLQKEA
FT                 RFCGFAEYLNKALRNQFVFGLQNKAMQTRLLEEKELTWEKATTLASAMEAT
FT                 QQGIGIVRHEAAAAEVKFVEKSQKPELKQKNYKPASLKCYRCGSDGHMANM
FT                 CRHATTTCLKCKKVGHLQRVCRNNTKKKVNVVEEIHDSEEEEEEVNTVVVS
FT                 NIKSEDSVYAPKIFLDLLVNKQVIKFEIDTGSPVSIINLQDKLKWFKDYLM
FT                 LPSKIRLSSYCGKEIELYGTILIEVGIGNTKTKLRLFVVNSNRRPLLGREW
FT                 MQSLKLNWNEILLTRKVLVKSIGTQSEEVKEKLMEKFPRVFEETVGRITNM
FT                 QASLVLKQNARPVFLKSRTLPFALKELVETEINKLVQQGIWTKVNQSEWAT
FT                 PIVPVKKTGNKIRLCGDYKLTVNKHLLVDEHPLPTIEELFANMAGGKKFTK
FT                 LDLAQAYLQMEVHPQSQEILTLNTHMGLFKPNRLMYGVASAPAIFQRQISS
FT                 ILQDIPGVSVFLDDVKITGSNDEMHMQRLTEVLKRFDENNIRINVKKCFFF
FT                 ADSIEYCGYVIDKQGIHKMESKIEAIQKMPRPKDQDQVRAFMGLVNYYGRF
FT                 LPNLSTYMYPINNLLKNKTNFRWNTECEKAFNWVKSEIQSERVLVHYDSTL
FT                 PLILAVDASPYGVGAVLSHIMPDKKERPIQYASQTLSSTQQKYTQVDKEAY
FT                 AIIFGVKKYYRYLYGRKFILETDNKPVSQIFSPNKGLPTLSALRMQHYAVF
FT                 LQSFDFEIRHRPSQDHANADAMSRLPLSNKGNDLTSKEIDEIEINQIETLP
FT                 VTLKELKECTEKDDTVQILMEGLRTGRTVEKENRFGIDQEEFTLQSGCLMR
FT                 GSRAYVPPSLRTKVLQELHTGHFGICRMKSMARAYCWWHKIDEDIEKLSKQ
FT                 CIGCAKVRKDPPKISTHIWERPTVPFHRVHADYAGPFQGCYFLILVDAFSK
FT                 WPEVKITKDMNTETTIEKMREIFSTFGLPSTLVTDRGTQFTSESFQSFLKA
FT                 NGIVHKMGAPYHPATNGQAERYVQTIKEKIKALNCKTSEISKQLQNILMIY
FT                 RKTVHPSTGESPSMLMLGRQIRSRIDVMLPPKEKEYSTYEEKPTKRSFNPQ
FT                 DRVTARNFVPNKERWEFGTIKSKIGKLHYEVVLDDGRIWKRHVNQLRPGPE
FT                 KNQFETRFTCPETEVEERESTDSDMVLPNDDHGKTSSTDNHEARDNTLRRS
FT                 IRIRTLPAKLR"
XX
SQ   Sequence 4051 BP; 1568 A; 664 C; 845 G; 974 T; 0 other;
     gttggcgacg aggctgaacc agttcatgga agaggaaaag aaaaaaaaca gtgtttgttc        60
     aagtctaccc gtagaggaaa agtttatcaa aatgaataat ccgactcata atgtctacat       120
     tgaaccatac aacaaagaag tgttatcatg gaagagatgg gtaaaacggt tggagacagc       180
     aatggagatg atggatttgc agccggagaa aaagaaacca gtgctcttgc attacatggg       240
     tatggaatgc tacaacaccc tgtgtgattt agccttaccc aaagaaccgg aaggtttgac       300
     ctaccaggaa gtagtggata aattaacttc ccattacgaa cccagaccat tggaaatggt       360
     agaattgttc aaattttggc aacgaaaaca gcaagaaggt gaaacggttg cggaatacgc       420
     caaagtgctc cagaaagaag caagattttg tgggttcgcc gaatacctga acaaggcgtt       480
     aagaaaccaa tttgtcttcg gattgcaaaa caaagccatg caaaccaggc tgttggaaga       540
     gaaggagctt acatgggaaa aggcaaccac attggcatca gctatggaag caacgcaaca       600
     aggaataggc attgtgagac atgaagcagc cgcagccgaa gtgaagttcg tagaaaaatc       660
     tcagaagccg gagctaaaac aaaagaacta caagccagca tcgctgaaat gctatagatg       720
     tggtagtgat gggcacatgg caaacatgtg cagacatgcc actactactt gtttaaagtg       780
     caaaaaggtt ggacatttgc agcgtgtgtg tcgaaacaac acgaagaaaa aggttaatgt       840
     cgtcgaggaa attcacgaca gcgaggagga agaagaagag gtaaatacag ttgtagtgag       900
     taacataaaa agtgaagatt ctgtatatgc accaaaaata tttttggact tactagtgaa       960
     caaacaagtg attaaattcg aaatagatac gggatcccca gtttcaatta tcaaccttca      1020
     agataaactt aagtggttta aagattattt aatgttgccg tcaaaaataa gattgagcag      1080
     ttattgtgga aaggaaattg aattatacgg aaccattttg atcgaagtag gaataggaaa      1140
     cacaaaaaca aaactcagat tatttgttgt aaattctaat agacgccctt tattgggacg      1200
     agagtggatg cagtccttaa agttgaattg gaatgaaatt ttactcaccc gaaaggtact      1260
     agtgaaatca atcggcacac aatcggaaga agtgaaagaa aagcttatgg aaaaatttcc      1320
     aagagtattt gaagaaacag taggcagaat aacaaatatg caagcttcac ttgttttaaa      1380
     acagaacgct agaccagttt ttcttaaatc acgaacctta cctttcgcgt taaaggaact      1440
     agtagaaaca gaaataaata agctagtaca acaaggaata tggacaaaag taaatcaaag      1500
     tgagtgggcc actcctattg ttccagttaa gaaaactgga aataaaataa gactatgtgg      1560
     tgactacaaa ctaacggtga ataaacattt gttagtagat gaacacccat tacctacaat      1620
     agaagagctg tttgcaaaca tggctggtgg aaaaaaattt acgaagctag atctagctca      1680
     agcctacttg caaatggaag tccatccaca aagtcaggaa atcctaacat taaatacgca      1740
     tatgggactg ttcaaaccta acagattgat gtatggggtt gcttcggcac cagctatttt      1800
     tcaaaggcaa atcagttcaa tactccaaga catacctgga gtgtctgttt ttctagatga      1860
     cgtaaaaata acaggatcca acgacgaaat gcatatgcaa agactaactg aagttttaaa      1920
     aagatttgac gaaaacaaca taagaataaa tgtaaaaaaa tgtttctttt ttgcagatag      1980
     tatagaatac tgcgggtatg taatcgacaa acaaggaata cataagatgg aatcaaaaat      2040
     agaagccata cagaagatgc caaggccaaa agatcaggat caagtgcgtg cttttatggg      2100
     actagtgaac tattatggaa gatttttgcc gaacttaagt acttacatgt atccaattaa      2160
     caacctacta aaaaacaaga caaattttag gtggaataca gagtgtgaaa aggcctttaa      2220
     ctgggtaaag tcagaaatac agtctgagag agtattggta cactacgata gtacccttcc      2280
     attaatatta gctgtagatg cttcaccgta tggagtaggt gctgttctta gccatatcat      2340
     gcctgacaag aaagaacgtc cgatacaata tgcatcccaa acactctcaa gcacacaaca      2400
     aaaatatact caagtggata aggaagcgta cgccataata tttggagtaa aaaaatatta      2460
     tagatacttg tacggaagaa agttcatatt agaaactgat aacaaaccag tatcacaaat      2520
     attctcacca aacaaaggtc ttcctacgtt atcggcatta cgaatgcaac actacgcagt      2580
     gttcttacaa tctttcgact tcgaaatcag acatagacct tcgcaagatc atgcaaatgc      2640
     ggacgcgatg tcacgacttc cactttcaaa caagggaaat gacttaacaa gcaaagaaat      2700
     agatgaaatt gaaattaatc agatagaaac attaccagta actttgaaag aattgaagga      2760
     atgtacagaa aaagacgaca cagtacaaat actcatggaa ggtttaagga ctggcagaac      2820
     agtagaaaag gaaaatcgtt ttggaataga tcaggaagaa ttcactttac aaagcggatg      2880
     tttgatgaga gggtcaaggg catacgtacc accttcctta agaacaaaag tattacaaga      2940
     attgcataca ggacattttg gaatttgtag aatgaaatca atggccagag catattgttg      3000
     gtggcataaa atagatgaag atatagaaaa attatctaaa caatgcattg gatgtgcgaa      3060
     agttagaaaa gatccaccaa aaatttcaac gcatatctgg gaaagaccaa cagttccatt      3120
     tcatagagtt catgcggatt atgcagggcc gtttcaagga tgctatttcc tcattttagt      3180
     tgatgcgttt agtaagtggc ctgaggtaaa aataactaaa gacatgaaca ctgaaacaac      3240
     aatagaaaaa atgagagaaa ttttctctac atttggtttg ccatccacat tagtaacaga      3300
     tagaggaaca caatttacat ctgaaagctt tcaatcattt ttaaaagcaa atgggattgt      3360
     ccataaaatg ggagcgccat atcatccagc aacaaatggg caggctgaaa gatatgtaca      3420
     gacgattaaa gaaaagatta aggctttgaa ttgcaagact tctgaaatat ctaagcaact      3480
     gcaaaatata cttatgatat atagaaaaac ggtgcatcca tctacgggag agagtccatc      3540
     aatgttgatg ttaggaaggc agatcagatc tcgtatagat gttatgttac cgcctaagga      3600
     gaaagagtac tccacgtatg aggaaaaacc tacaaaaaga tcattcaacc cacaagatag      3660
     agtaactgca agaaatttcg taccgaataa agagagatgg gaattcggta caattaaaag      3720
     taaaattggt aaattacatt atgaagtcgt attagatgat ggaagaattt ggaaaagaca      3780
     tgtaaatcaa ttaaggccag gacccgaaaa aaatcaattc gaaacaagat ttacatgccc      3840
     agaaacagaa gtagaagaac gagaaagcac ggatagtgac atggtattac caaatgatga      3900
     tcatggtaag acctcgtcca cagataatca cgaagcaaga gataatacat tgcgaagatc      3960
     tataagaata agaacattac cagctaaatt acgttaagtt taaacattgt ttaagaaccc      4020
     ataaataatt ctttgtaaag gggaggaaag t                                     4051
//
ID   Gypsy-11_AnSt-LTR repbase;    DNA;    INV; 99 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-99
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 807-807 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 99 BP; 33 A; 21 C; 25 G; 20 T; 0 other;
     tgtcatagct gtcaaatgac agcaggcaat aaaaggcagt cggggattga agcgcaagca        60
     gaacacacgt gtggattcct cttgttccga aatacaaca                               99
//
ID   Gypsy-11_BrCo-I repbase;    DNA;    INV; 6692 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-6692
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1410-1410 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1253..2581
FT                 /product="Gypsy-11_BrCo-I_1p"
FT                 /translation="MPLEDERNAYLLVSKRILKSEISTNPTTLQGYRQGII
FT                 SAHNRFVQYVSGKFNNASNSNKEIYSSNLTYVRTKTSNCFLKLNLTYPFTS
FT                 DLLELIDDKLLVGPDSNNSNNTNTENTSSDDTDTEQELEDSDDNNQNNDDN
FT                 NQGDNNQNNDDNNQGDNREMALTVVEFLNFATKVVPEFDGTYANLQGFIDS
FT                 LNLANASVATHTPSYIELIKTKLKGDARTCIGSEATVEAIIQALRGNIKPE
FT                 SSSLIESKMMNINQAKKKATDYVREIESLTADLKRAHITEGIPIAAADSLA
FT                 TKAAIKAIRQNASSDKVKWLMEAGNFQNLNEVVDKFVSLSTAETATNSNLA
FT                 TINYINKRHNGGNYRGKRQNNRGYRRNNYQTNSYNSNYRSNNHRGSNNRGY
FT                 YRNNNDNRRGNQSYNSNRRTNNVRYIEAGRDENTSGNVTAPQQLMLRDA"
FT   CDS           2515..6291
FT                 /product="Gypsy-11_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SWKRRKYVGKRNGPSATYAEGCLTKPIPQRITTMRRT
FT                 FDPNHPYKRLYSMDLSLASYISLKSEITGKIRTYLLDTGASISVLKIDKLL
FT                 KSVPIDSYTCKISGVADGLISTLGSAKTKVFIGNTFVTQRFHIVDKNFPIP
FT                 CDGILGLDFFDNNRCILDYGIQWSLIVRPLHRQYSKIPIYDSPSNSSLTIP
FT                 ERCEVIRRVGISSGHGDIYVPNQRIADGVFIGRTITTRTNPYVRILNLNDH
FT                 TVQLHNVKIKSEKMENYNVYGTPVPSKNNATEILQKLQKNFPSLQYNSLTN
FT                 LCTQYSDVFALDTDQVTFNNFYKQKLRLKDDTPVYQKNFRIPHTQKPILEA
FT                 FVENMQKTKILSPSTSEYNSPVLIVPKKNLPNQTEKRYRFVVDYRQLNKKL
FT                 LSDKFPLPRVDDILDKLGNARFFSVIDLLNGFYQIELDEESKDLTSFSTDK
FT                 GSFKFNCVPFGLKVGPNSFQRMMTLAFSGLPTLNHFIYMDDLIVTAPTEKK
FT                 MIQNLKDVFDICRKVNLKLHPEKCQFFLKEVTFLGHKCTQHGILPDDSKID
FT                 KVLNYPRPDSADSARRFVAFCNYYRRFIKKFTHHAYHITRLTKKNVKFEWS
FT                 EECEHAFHYLKNSLINPPILKYPDFTKQFCITTDASIIACGAVLTQDYDGV
FT                 QMPIAYASRSFTPGERNKSTPEQELAAIHWALNHFKPYIYGTKFLLKTDHR
FT                 PLIYLCSLKNPSSKLLRMRLDIEEYDFEIEHIKGKDNVIADALSRIDYNDL
FT                 KEIVTKINVIRKVTTRSESRKNQSSNLQDNNTFKDIVITKPNVYTVLDPVE
FT                 VKNLPKLIFNFKSKTPHCIVLLRRKQLIKLRLSDFRINGNLNLNQVFLKLE
FT                 IMASEINVKNLRLSLNDEIFANCSELQFKQAINNVLNNLTIALTPSVTYIS
FT                 DTQEILNLLTKYHNDPLHGGHAGIKRLYKKLRLKYFWKDMLKDIDNFVKSC
FT                 KDCQINKTRPRTKERLKITPTPQTAFDIVIVDTIGPLPKSDKGNTYSVTLM
FT                 CDLTKYLVTISLPDKKAVSIAKAIFERFILTYGPMKQLLSDRGSEYVNSIL
FT                 DDLCKLLNVAKETSTSYHHRTVGTIERSHRTFNEYLRSYVNEQKSDWDDFL
FT                 TYFTYCYNTTPSVAINDYCPYQLIFGKTPNIYDFLKSDSVDPVYNIDDYHR
FT                 EVKFRLQIAHQRAQKYLVESKIKRKNVYDCTSNPQTLSPNDLVLLQVNERH
FT                 KLDPLFKGPYRVKQLYEPNVIIVNDVGKEKLVHKDKVKPFHKCFYYRFN"
XX
SQ   Sequence 6692 BP; 2509 A; 1191 C; 1023 G; 1966 T; 3 other;
     tggcgattct gccagtttaa aaaaaaatca tatagtgcat atagtgtgca taactgcata        60
     gtgacgctgc atggtcagca taaacagtta caaatatttt aaaataatgc gttgaatctt       120
     aaatcgttat taattcttat gttattgcat caataactaa ctattttaaa taaaataatg       180
     aattataagt gaatatgggt aaaactaatt ctaaacagcc agccgcgaca gcacaaggaa       240
     ccaatgcaaa cgcaaacgcg aacaacatag aaattattga tgtattagca gatcataaag       300
     aaaccacgac gatcatttta gtgtgtattt tattaattct gataatacat ggcgcggtaa       360
     aaatctactg ttggcataaa agtaccatta agcgtgccga acgcctcaaa tcgcgaatta       420
     atttgagtgc tgtttaactt aataaaaata acattacaaa acgaactgtt cagtacacat       480
     aaacgtaaaa cttcttcatc aaaagtgatt cgggaaaata agagaaatga ctcgtagaga       540
     ccttattaag acctattgtg atgcgtgtaa ttcattcgaa aaattactaa atgaaaataa       600
     aaattcgtgc aagtacatgc taacacgttg cccattgtgt taccttaaac atattattat       660
     tacgtctaaa acatttaact tggtagcgaa cgtacaatgt catgactgtt atggacatat       720
     gcaaatcaat gctgaacatt tcgtataaaa ttatcgataa tcgcgacaca tcaacacgat       780
     caaagaatca acctgacgtc aaacattcca acctaaactc tctataaatg aagccaagcc       840
     aagctgtacg aaattccagg aatctcatca ccaaaccgaa gccaagccgt tccattatca       900
     aatttcaagc gacgctcatc ccaataagcc aagccaagcc attgcagaaa ataaaggtat       960
     catattaata gacaaaacaa aaattaaatt gaagataagt gaatatagca agtgttaaat      1020
     ttcaaaaaaa aaaaacaata atgcaaagac agtaagtcat atgaacattt aatttgatat      1080
     ctcaatttgc ttgtttttga aaacgtttgc caaatattaa tgtgaaatga aactacacgt      1140
     ctttctcacg atattgttta gataaaacta tgaaacttga taagcgttat gatacttatt      1200
     cacgtattaa cggcgataat tgcatttaca caatttcttt tgttaagttg atatgccttt      1260
     ggaagatgaa cgtaatgcgt atttactagt tagtaaacga attttgaaat cagaaataag      1320
     cacaaaccct actacattgc agggatacag acaaggtata atatcagctc ataatcgatt      1380
     tgtccaatat gttagtggta aattcaacaa tgcaagcaat agtaataaag agatttatag      1440
     ttccaactta acttatgtga gaacaaaaac cagtaattgt tttctaaaat tgaatcttac      1500
     ttatccattt acaagtgatc ttttagaact tattgacgat aaactattag tcggtccaga      1560
     ttcaaataat tcaaataata cgaatacaga aaatactagt tcagatgaca ctgatactga      1620
     acaagaatta gaagatagtg acgacaataa tcaaaataac gacgacaata atcaaggcga      1680
     caataatcaa aataacgacg ataataatca aggcgacaat cgcgaaatgg ctcttaccgt      1740
     agttgaattt ctgaattttg ctactaaagt tgttccagaa ttcgatggaa cctacgcaaa      1800
     tctccaaggt ttcattgatt ctcttaattt agcaaatgct agtgtagcaa cacacactcc      1860
     ttcttacata gaacttatta aaacaaaact aaaaggtgat gcaaggactt gcattggcag      1920
     tgaagctaca gtagaagcca ttattcaagc ccttcgaggt aatattaaac ccgaatcgtc      1980
     ttccctaatt gagtccaaaa tgatgaatat caatcaagcc aagaaaaaag ctactgatta      2040
     tgtgagagag attgaatctc ttaccgcaga tcttaaacgt gctcacatta ctgaaggcat      2100
     tccaattgcc gctgctgaca gtcttgcaac taaagctgca attaaagcta ttcgtcaaaa      2160
     cgcgtctagc gataaagtca aatggttaat ggaagctggt aacttccaga atttaaatga      2220
     agttgttgac aaattcgtta gcctaagtac ggctgaaaca gctaccaatt ctaaccttgc      2280
     tacgatcaat tatattaata aacggcataa tggtggtaat taccgsggta aacgtcaaaa      2340
     caatagaggt tatcgtagga ataattatca aacaaattct tataattcaa attatcgttc      2400
     caacaaccat cgcggttcaa ataacagagg ctattatcgt aacaacaatg ataaccgccg      2460
     aggtaaccag tcttacaatt ccaaccgtcg aactaataat gttcgttaca ttgaagctgg      2520
     aagagacgaa aatacgtcgg gaaacgtaac ggcccctcag caacttatgc tgagggatgc      2580
     ttaacaaaac ctatccctca acgaattacg actatgcgtc gtacttttga ccctaatcat      2640
     ccttataaga gactttattc aatggattta tctttagcta gttacatttc acttaaaagt      2700
     gaaattacag gaaaaattag aacgtatcta ttagatacag gcgcatcaat ctccgtccta      2760
     aaaattgata aattattaaa atctgttccc atagacagtt acacttgcaa aatcagcggt      2820
     gtagcagacg gtttaatttc tacattagga tcagcaaaaa caaaagtttt tattggtaac      2880
     actttcgtta cccaaagatt tcatattgtt gacaaaaatt ttccaattcc atgtgacgga      2940
     attttaggcc ttgatttctt tgacaataac agatgtattt tagactatgg cattcaatgg      3000
     tcattgattg tacgaccact tcatcgacaa tattcaaaaa ttccaattta tgattcgcct      3060
     agcaatagtt cattaacaat tccagaaaga tgtgaagtaa tacgaagagt tggcatatca      3120
     tcaggtcacg gtgacattta tgtccctaat caacgaatcg cagacggagt attcattgga      3180
     agaactataa cgacaagaac taatccatat gtccgaattt taaaccttaa cgaccatacc      3240
     gttcaattac ataacgttaa aataaaatct gaaaaaatgg aaaattacaa tgtttacgga      3300
     acacccgtac caagcaagaa caatgcgaca gaaatattgc aaaaattaca gaagaatttt      3360
     ccttccttac aatacaatag tttaactaat ttatgtactc agtacagtga tgtattcgct      3420
     ttggatactg atcaggttac tttcaataat ttctataaac aaaaattacg actaaaagac      3480
     gacacacctg tttatcagaa aaattttcgc atccctcaca cacaaaaacc aatactagaa      3540
     gcatttgtag aaaacatgca aaaaacaaaa atcctatcac catctacgtc agagtacaat      3600
     agcccagttt taatagtacc aaaaaagaat ttaccaaatc agactgaaaa acgttatcgt      3660
     tttgttgtgg actacaggca acttaataaa aagcttttat cagacaaatt tccactacct      3720
     agggttgatg acatcttaga taagcttgga aatgcgaggt ttttcagcgt gattgacctc      3780
     ctaaatggat tttatcaaat agaactagac gaagaatcca aagacctcac gtcmttttca      3840
     actgacaaag gatctttcaa gtttaattgc gtaccattcg gtctcaaagt aggaccaaac      3900
     tcttttcagc gtatgatgac actagctttc agtggattac ctacacttaa ccattttatt      3960
     tacatggacg atttaatagt gacagcacca acggagaaga aaatgataca aaatttaaaa      4020
     gatgtgtttg acatttgcag aaaagtcaat ctgaagttac accctgaaaa gtgccaattt      4080
     tttttgaaag aagttacatt tcttggacat aaatgtacac aacatggtat cttaccagac      4140
     gattcaaaaa tcgataaagt tctcaattat cctagacctg acagtgctga ttcagcacgc      4200
     cgttttgttg cgttttgtaa ttattacaga cgattcataa aaaaatttac tcatcatgca      4260
     tatcatatca ccagattaac gaaaaaaaat gttaaatttg aatggtccga agaatgcgaa      4320
     cacgcattcc attatttgaa aaactcattg ataaatccac caattttaaa ataccctgac      4380
     tttaccaaac aattctgcat taccaccgat gcaagtataa tagcttgtgg ggcagttttg      4440
     acacaagatt atgacggagt tcaaatgcct atcgcatatg catcccgttc ttttacacca      4500
     ggagaacgaa ataagtccac acccgaacaa gaattagctg caatccattg ggctttgaac      4560
     catttcaaac cgtatattta tggaactaaa ttcttattga aaactgatca cagacctttg      4620
     atttatctgt gttcgctaaa gaacccctca tcaaaattat tacgcatgcg actcgacatt      4680
     gaagaatatg atttcgaaat cgaacatatt aaaggtaaag acaacgtcat tgcagacgct      4740
     ctctctagaa ttgactataa cgaccttaaa gaaattgtga caaaaataaa tgtaattcgc      4800
     aaagttacta cgagatcaga atcacgtaaa aaccaaagtt cgaatttaca agacaataat      4860
     acattcaaag atattgtaat tactaagcct aatgtttaca cagtattgga tccagtagaa      4920
     gtaaagaatc taccaaaatt gattttcaat ttcaaatcaa aaacgccaca ttgtatagtt      4980
     ttattacgtc gtaaacaatt aattaaatta agactatctg actttcgaat taatggaaat      5040
     ctcaatctta atcaagtctt tttaaaactt gaaattatgg ctagcgaaat aaatgtgaaa      5100
     aatttaagat tatcactaaa tgacgaaata tttgcaaatt gtagtgaatt gcagttcaaa      5160
     caagcaatta ataacgtatt aaataattta acaattgcgt taacaccgag tgttacgtat      5220
     ataagtgata cacaagaaat attgaactta ttgacaaagt atcataatga cccacttcac      5280
     ggtggtcatg ctggaattaa aagactttat aaaaaactac gtcttaaata cttttggaaa      5340
     gatatgttga aagatattga taattttgtt aaatcttgta aagattgtca aattaataaa      5400
     actcgtccca gaacaaaaga acgtctcaag attacaccca cacctcagac agctttcgac      5460
     attgttattg tcgacactat aggtccactt ccaaaatctg ataaaggaaa tacctattcg      5520
     gtaactttaa tgtgcgatct gactaagtat ttagttacta tatccttgcc agacaagaag      5580
     gccgtaagta tagctaaagc gatttttgaa cgatttattt tgacttatgg ccccatgaaa      5640
     caattgctat cagaccgtgg gtctgagtat gtaaactcaa ttttagatga tttatgtaaa      5700
     ttactaaatg ttgcgaagga aacttcgact tcatatcatc atcgcaccgt gggtactatc      5760
     gaaaggtccc acagaacatt taatgaatac ttacgatcat atgttaacga acagaaaagc      5820
     gattgggatg atttcttaac atactttacg tattgttaca atacaacacc ttcagtagcc      5880
     atcaatgatt actgtccata tcaacttatt ttcggtaaaa caccaaacat ttacgatttc      5940
     ttgaagtctg actcagttga tccagtgtat aacattgacg attatcacag agaagtcaaa      6000
     tttcgactac aaattgcaca tcaacgagct caaaaatacc tagtagaatc caaaattaaa      6060
     cgtaaaaatg tttatgattg cacatccaat cctcaaactt tatctccaaa cgatttagtt      6120
     ctattacaag tcaatgaaag acataaattg gatcctttgt ttaaaggtcc atatagagtt      6180
     aagcaattat atgaacctaa cgttattatt gtgaatgacg ttggaaaaga aaaattagtt      6240
     cataaggata aagttaaacc ttttcataaa tgtttttatt atagatttaa ttaattcatt      6300
     atttacgaaa attaaaaaaa aaaaaaacca aaasaaatat acaaaaatat tacctattta      6360
     cctactaatt aaacaatcat ttcaatatat taaaatttgt taagtatgaa cttccgtgcg      6420
     tctgacggcg aatggcctgg tctgccagat tatttttttt gattttcaaa ttattaacgt      6480
     aacaatttta aggggaagat gacgacggca acggccagcc agtgttatta cacctaaaaa      6540
     tgatctatct tcggatcgga aattcatatt tcaaataatt gcgcgcatag aattaaataa      6600
     atcattgaat tattaaaata atacaataaa taacccattt tataattctt aagttaataa      6660
     gctaaattca caccttttcc aaagggggaa ga                                    6692
//
ID   Gypsy-11_BrCo-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-148
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1413-1413 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 148 BP; 61 A; 23 C; 19 G; 45 T; 0 other;
     tgtaaaggtg ttaaacctct gattagaata agagagcaat tctctcatat gattgttata        60
     tgtaccactg taactcatta tactgattca ttcattaaag atacaccaaa gtaaaagaac       120
     cacaaataaa gagtaattaa ttaccata                                          148
//
ID   Gypsy-11_BTa-I repbase;    DNA;    INV; 19456 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-19456
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 675-675 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           6948..8243
FT                 /product="Gypsy-11_BTa-I_1p"
FT                 /translation="MESESERQDESHDNFERKNPSAPEMSSSDSESEGSGE
FT                 QAGSLSLSLAIKALTKFDGKESVQEWIYGIDDLRKCLRAKDKAAFFKIVRT
FT                 FVRGEASEVIRGSDEDWASTRKTLFEIYGEKRTLTEIERCLAESRQDNGES
FT                 VDAYATRVRQLGIKYLALLKKTYTSVDRKMIMDRVKDNFVRGLNVRIYQAV
FT                 VNSKFTDLSEAQATASRIERDFMARADLYGHNSMSRRMGELRLRETYSAPA
FT                 DNFSSRQRRLTNKDHEGLDAGRASGDVRPLPGRGRVKPGITRDPDDMRCYA
FT                 CNEYGHIATFCRNRGRNQPPRDARVSNQVVRQTAEQGPPDGRPHGSGQGPL
FT                 NGTRSRNNSEVPCSYCGKLYHGIETCYTRRNALNRAAREGREPHRGFENPE
FT                 QKNWRGERNNDPPAGQRSGNARAPPGTTPAGGAMFTRQ"
FT   CDS           join(8318..10888,10653..12023)
FT                 /product="Gypsy-11_BTa-I_2p"
FT                 /translation="MEDTTVTLLDTGSQISAVKESHVAPDTPVDLLDIKRI
FT                 TGINEHPIHTLGKVKLPLSINGLEVKVDFEIVPNAFRIREGCNAILGADLL
FT                 RALQAKIDYENNTCILMGEPFPIVSPEDWGQEVTLPPFSENRVFVETKSDR
FT                 EGIIEAMNLNEFVATAHCFVQPRHGRAEILVANVSDEPQKIRLPSLPVVEG
FT                 EILPSPAPVEVSQCGRTPECGTDSGERTEREREAQLVNSLRLDHLNPEERN
FT                 AAETACLEYKDIFLLPGDKLTYTDTLKHSIPLKEGTGIIFVRPYKIPVQHE
FT                 EQVHEEISKMLDNKLIEPTTSPYNFPLVIVKKRPDASGKQKIRICIDTRKL
FT                 NEATVESFFALPSIQDLLMRIGGDVTYFSVIDLASSFNQILLDEDAAEKCS
FT                 FTVSRNGLQHRYKFTRMPFGLTSAPFTFQRLMSIVLLGLDPQLRIFSYLDD
FT                 LIVANPCIKSHTAALGALFGRLREHNLKIQPDKLDLFKKSVAFLGHVVSRE
FT                 GIQVCPNKVAALEQTNPPRDVPELRRFLGAASYLRKFIENFSIIAKPMFDL
FT                 VKKDKAFIWSEKCQESFQSIKRALTSAPVLRHPDFGENADPMILTIDGSRQ
FT                 GLGNVLSQGPAVGKDRPICYNSRTLSPPEANYPSIHRELLSLVWAVTSLRP
FT                 YLYARSFILVTDCKPLIYLNSVPMNNASNRLVKWKLQLLEFKFTLVHRPGT
FT                 ARCLAMADFLSRVNTNPQTMKNVGDQSAEIGVEEEEEPKSDLTKILLDSHD
FT                 PDVGEVRVSCCVSAVETRAQRKKRGDVKKPVEAAPRRDTPPRDRGKRAGLG
FT                 EGAEDASRERAEEGSGDRVYRPSVRFTKFRCIREKKGRENTKQARQPPLQR
FT                 ATEPRSQSKQPREETPPPVTAENEQVSGKEQRTRAASAPKKGAGTECTDPQ
FT                 LGSQNSGASEKRKGERTQNKQDNPPSNAPLNHNQTENLSAVTPQSPEPPRQ
FT                 SGEMSDKEKKAIMYTFHDSPLSGHAGIERTYAHLKNNGYNWAGMKSDVTRY
FT                 VKSCESCQLNKHHYSQFTNAPMMLTETPSAPLELVSIDIVGPLPATNINKY
FT                 TVILSLVDHFTGYIEFYPLVDQKAPTVAKVLINEFVSRFGIMKRLLTDGGS
FT                 NFTSDVIKEMCKLLGVKKVCTTPYRPQTNGLLERRHKVLAEYLRHYVNSDQ
FT                 ADWDEWLPLARACLNILPNTSSSYSPFELMFGRSFEMPRTLMQPPTLHYAE
FT                 EDYIQELKTRMRTTWQLARSNVLKKKIKRVDKANETKKFPKFKVGDLVLLH
FT                 DPTVKRGRSKKLDSQYVGPYKIINRTGPVNFEIKKGRKSQNVHADRLKPFC
FT                 ER"
FT   CDS           16231..18033
FT                 /product="Gypsy-11_BTa-I_3p"
FT                 /translation="MSLVTSPEIQIGGKKRESDWVEYSMETNYTGKKEVAT
FT                 KRVKRVRKGIFNSLGTAVKLISGNLDAADGEYFEQKLREISEGTHDIYSLA
FT                 AQQTTLMSATVHTLNGTLVNWEENRVRLEETIGNITAVERGLNHDVANVVD
FT                 QLHVIRTETEARNILTELITSAKDNMQLILKTFEDARQGRINPLVLSPEKL
FT                 IPELRKIKLPAGLAFPIEPTYSGFHYFYDIVDVSAFTVGGNLTLIIKIPLV
FT                 DSETYTMNEVTPFPYSSPYNNGTYIFIKPDSDFVGLSNQDLHYVLFSRQQQ
FT                 NLCKRVSTGRVCPAGSIIHDFHSHTESCTIGIFKNRMSIGSECDLRVIELK
FT                 RPLWIKTPTTNLWLFVIPDSESGIITCRDGTLTTGNAVKVPLSGRGFLSLK
FT                 GGCMYISDSAQLRGVGNYKSFIDSQAPVIPMNSISLPILVEETMAKVKPAE
FT                 INITPHLLPMNMHLHELVETGRKISEIKNLLDAAEIDRLQTSQDNRHVAYI
FT                 SLFSLLLFALVTYFSRKAIIKGTKEVIGKCMIKGVPKPEVIYQQVPLGKLR
FT                 VRSPESQTSTEVNSTSGGENDEGNAEGEMETETTEFRNSPYPRRMRKNKDR
FT                 DLV"
XX
SQ   Sequence 19456 BP; 6038 A; 3947 C; 4377 G; 5094 T; 0 other;
     atttggtgtc aggtgtggtg tgactaaatt agaaagtcac cagaggcgaa ccccgtgcct        60
     ccctgcgccc gtgcaaccgc gccgcgattt cgcgaaccgc acggaaacgc tccagtttat       120
     ttcttcgtga gaggatagga cggaaccagc cagccagacc atccagccaa ccagccagcc       180
     agaccatcca gccaaccgat caaccggaat aaccagggaa ggaagccaag ccgctctggc       240
     gatctcccaa cctcagcaac gccgacctcc accccaggcg accgtcagga tggggctaca       300
     actttggtgg caactcatcg taagataaaa ttttaaagag ataaattttc tcccctctgt       360
     cacctcagaa attcttcttt tttttttttt tttttttttt tttttttttt ttttttttgt       420
     ttggtctgta gacggaatct ctgatttttt tttttctctt ttctcaactg ttcctaagtg       480
     ctgagttttt ttttctcttt tctttttttt cttctcgttg cgtctcacag gtcttctctt       540
     acattttctt gtttcttttc tcttttcctt tttcttttct tcccttttaa gtcaatgtgt       600
     cgatcctgcg ggaagattag agccgaaaag cgcgaacaca agctccgggc tttagagcta       660
     gccgcgcaaa tagctcgctc actctttgag ctagggaagg aagccgaagc gagtggtagt       720
     tttctcctac aacagtctgc ggagagaagc ggagagagaa ttctcaggcg gctacagagc       780
     gcgctgaaaa tcgagaatta gttgcatatg tgtgaattaa aaattttgtc tgaaaatcga       840
     gaattagtca aggaagtaac tctttcaaag ctctctgagc cgcgagaatt aagtttccgc       900
     ctggcacact tgaagctgcg atcgagcact tcctcctcca agggtccctg cataaaattt       960
     aaagctctct gagccgcaag aatccgagat tcttgcctgg cacacttgaa gctgcaaatt      1020
     tagcacacct gggttactgt cccccttcgg agctctctga gccgtaagaa ttaaatttct      1080
     tgcctggcac acttgaagct acgattcgga cattactcgg agcagagggg tttctcccaa      1140
     cctcaaagta gcgtggaatc ccaggggaaa ctggactgag ccctgtcaac tcgaaatata      1200
     atatacccca taaataaccc cgagaacaaa tggcaaccgg caaccggtgc tgaattttca      1260
     atgctgaatt tttcagtgct gaatttttca agtgctgaat ttttcaggtg ctgaattttc      1320
     aatgctgaat ttttcaagtg ctgaattttc aagtgctgaa ttttcaaact gctggatttt      1380
     tcagtgctga atttttcaaa gtgctgaatt tttcaaggtg ctgaatttgg gttttcggtt      1440
     gctgaatctt tcaaaatgca cagtaaacga cataaatcga ttaagcacaa aagtgcttaa      1500
     ttcagcacca cttcttatgg gattaagcac attcatcacc catatataag ggccaattga      1560
     agggttgggg ttaaaggaag tagggtggat agagggttgt ggtgtgagtg aggggtctga      1620
     ggttgagtgg caaccggtgc tgaattttca atgctgaatt tttcagtgct gaatttttca      1680
     agtgctgaat ttttcaggtg ctgaattttc aatgctgaat ttttcagtgc tgaatttttc      1740
     aggtgctgaa ttttcaatgc tgaatttttc aagtgctgaa ttttcaagtg ttgaattttc      1800
     aaactgttgg atttttcagt gctgaatttt tcaaagtgct gaatttttca aggtcacaac      1860
     agtcagtgat acattgtaaa gtgcttattt tcaaaagtga ttaattttaa aaagtgttgc      1920
     cgagttccca gtatgttaaa aaagatagtt gggggtgggt gttgatcagc gtttgtgtgg      1980
     atacagccat ataggatata tagagatttt ggttccggcc gctagacgtc gttgtcgtat      2040
     ttcaaatatg tgaaacgtaa taattacttt tcaattcgtt ggatgtaata tccgagacac      2100
     ttgtaattac cacattcctt aatactccgg aagtgggatc gaatcaacat aaccccttca      2160
     cattttcata ttaacaaaaa ctaatttcag ccactatttt ctggcgtcgc caaggagaaa      2220
     tggatataac gctgtatagt acgttctgac aatgataacg aaattggggg ttggactgtt      2280
     tgatgtgcgt atgaaatgct gcctgcaact ctttccgtgc ttgagcagct acacgggtgt      2340
     ttgggggcgt cgacctactt ggggaagtag gcttcgcccc ccgcgccgtc gcggcaccca      2400
     cccccaatta aagtatggtt ccacttctag gggtgatgat cagcattcgc acggatgcag      2460
     acacgcgcgg cgcgctctcg cgtcaccacc cccccccacc accccccctc cgttcccagt      2520
     ttgtacgatt ttatcgaggg ggactttgag ggatccccgt ccccgagaca ccactgtcac      2580
     cataaaaaac ccccggcagt tctcgtacac tcccggggaa acgtcttaca aactccaaat      2640
     ttcgccgagt tgggagactc gtatcgccct acgcgcagag gaacggggtc cgataggccc      2700
     ccgtaattac cggtagggtg attgttcgcg cgcgatactc ccgtgagacg ttccacgtac      2760
     ccctgcctct accatataaa agacccccgg gctaccggtt attccccggg gagaaatttt      2820
     acgcggcagc ataaggtccg ttgccgggaa gctagactcc gtgacgcgca aacgaggcag      2880
     tacccgagga cccccgtaat tatcggaggg ataatttttt cgagtcgacg ttcgagtcct      2940
     gtacagtata agagtcccct tagataatat aaaagccccc gggcgatacc tagatccgta      3000
     gccgcgcgac gggcccgtta tacggaacgc ccgcttcttc ccggctattc ctatgtcacc      3060
     cccgtattga gaggctgaag gcgactccgt aggaagttga aaaaatccga aaattctctt      3120
     acggctctaa cggccctccg cgtgttaaaa aaaattttat aatggcaata tttgtgtaag      3180
     acgggagtgg tggatgtatg ttgttccaga aattactggt ctgtctttgg atattatatt      3240
     gaaggacgta ttcttgtatg ctttatttta taaaaatgac aatgtcgatg gatgaaatat      3300
     ttgggttaga aggataagtg aaagctcgcc ccctatcaga aacaagactg gacgggttaa      3360
     ttttgttggt aaaatgtgga tgttaaaatt ggagcaagaa attcaatttc tactataaaa      3420
     ttgtacggat ataattatac gaatattttt actttgaggg taacggataa cagaatccga      3480
     aatcattaaa ttttatacct ggacgcaagt gaacatttag attttttttg cggtatgaat      3540
     attttgtatt ttaaaatata agagacatac ctgtaatttt gactctttct gtgtaataaa      3600
     cagcctgcat tgaatagaca atagagactt ttcttttgat tcctcaccta aatatttcac      3660
     ccattaaaac tttttatttt taccagaaaa taaatttcag acgctcaaat ggcgtactct      3720
     tgtccggaaa cacttccgtc ttattgattt gtgatacaaa aaattctaat tacaggccat      3780
     ccaagaaaag acccttcaag aaaccagtag agtttaccga atccagaatt ccagctccta      3840
     tcggagcaag ttcgactggg aattcaccat ctaggaagac ccccctttcg tccaccgggt      3900
     catgtaattc tcccgtgacc aaaagggccc cggttcccga tagcaagagg agtgcaaacc      3960
     ccaagtgagt cttgtttatg atttaattag actgtttcac tgcaatgctt ataatggaaa      4020
     aaaaaatcgt ctggaagtta ttttttggga ctatgctcta gttataggtt cgttttgaaa      4080
     ggcgagaaac gccacaaaaa tatatttttc cccaggagac aattacgcga aaaaaacttt      4140
     tgttccacga aaatgagatt ttaggatcac cctatatttc ttaatctgtt ttttccttat      4200
     agattatacg atgccgcggc ttcgcggggt ttagaacgta cgacgaggaa tgtaagagtt      4260
     cagtgataaa gcgaaaattg tcgaggtcgg tgtgttagta agttgtgagg aagttccgag      4320
     ttcctgtagt tctttaaagt tgtcgttaat tttttaagtg tcggtagaat gtcgaattcg      4380
     caattcgaag ctgcgaagaa gggggcacgg cgccaccttc gtcgggcggt ggctgtcttg      4440
     tctgtgggcc tggtccatgc cctggggcgt cgacggttaa gttcggtgga agggagtgcg      4500
     gaaacgttgg agtgcgtggt gtcctccctg gaagcggtca gggaggaacc tcttatagcg      4560
     taagtaaaat tttaatttta caaaaattcc tctggaacgc tgaaatttgt ttggagaaaa      4620
     aaatagcccc cccccccccg ggagaatcta ctggtaaagt tcggaggggg ggagtatatt      4680
     ttgcgagaga aaatttgacg cctaggagcg aaattttaaa agagggccta ccctcatttt      4740
     aaaaacagga agtgtggaaa actaaagttc catgtgtgtt ttatgttaaa cgttataaag      4800
     ctataagagc attcggcaag aaactttcat cgtaaaggtt aattttctca cgcgattagg      4860
     aaatttaccc cggaaaccga tcaccttttt agtataacct aaaaatctta gaatcgatgg      4920
     ggagtttaaa ctgtatatga cgcatataac atagcccgag gaaaatcatc taggtacctc      4980
     taggaacggt atgagcttta aaaattcgat taacgaaaaa taacaaaact attacttaca      5040
     gcaaacgagg gacgaaagag gaacgcggat tgtcaaatcg gcatgaccac tggaattttc      5100
     aaactaatcg accgttacgg tgccaaccaa taagagacgt gttccccctc ttccactgct      5160
     cgccgtagga gcggcgtcag ccccctccct gcttcgcacg acatgtagcg gagccgtagg      5220
     ctccgcctcc gatctgtaat tcgctctcgc agggttgaac ttccgcgcac aaaatggcgg      5280
     gcacactatg catcccctag acgcgttctt aaacataatt cagcttgtac gttaattatc      5340
     acgcgggggc ttttatcact tgtcagaaat gacctgtaaa atgacgtcac aaaaagacga      5400
     gttcgaaata ggagctcccc gttaaatacg tatgcccgaa ggcgcaaggg ttttccgact      5460
     gctaccactt ctgtgtgaat ggtccctcta tacgattagc attgcgagga tacttagggg      5520
     ggaaatatat tattccgggc atcccttaga gagctaactc tttaaaggga atcccccata      5580
     ttttatcctc ccgaaaattt tgagagggac cactccgccc caatcgccaa tatgctaaca      5640
     tttttttcca gtatccgtat cagaactgag ggaatttgcg aaaaattgga ggggtttaag      5700
     ggttttatat taacttgtaa gggactagaa ggaaggatcc ttgaagggac acacccataa      5760
     acctctaccc ccaataattc cgaggtgtgt gttcaagttc ccccctggtg tacgttgcaa      5820
     acataaaaaa acttcttatc gatacgaaga tttttattgt gcgtggtaga agtaacatag      5880
     aaattaacag agagatttag gttgagcatg cgcaattctc tatttggaca ctcgggacct      5940
     agaaatataa tctcttcaca attatattaa ggaaatagtc gtctgtgtta caaaagataa      6000
     gtttacacaa taaaaattat atttataata accccaagag aaaacttcgc taatcccctg      6060
     tgggacgcct tgcaaatagc cgaggagctc gcggagctaa aagagtcaat agagaaaacc      6120
     ttaagagcca tcgggtggaa accgaagaag agagcaagag cgaataagcg tatccgaaag      6180
     aacagaaaat taaaacgatt acgtgagctc ctagaagtaa agtcagaata ggcccttgtt      6240
     ttttttgtgt gtgtgtgtgt gtgttacatt tttttttcct ctctcctttt tttcctgtat      6300
     attttttttt ctttttttct gttcttttcc ctcgtcacgc gaaaccttcc aagacggcgc      6360
     tgacgatcga ccaatacccc ccaaattggg gtataacccc aagagaaaac ttcgctaatc      6420
     ccctgtggga cgccttgcaa atagccgagg agctcgcgga gctaaaagag tcaatagaga      6480
     aaaccttaag agccatcggg tggaaaccga agaagagagc aagagcgaat aagcgtatcc      6540
     gaaagaacag aaaattaaaa cgattacgtg agctcctaga agtaaagtca gaataggccc      6600
     ttgttttttt tgtgtgtgtg tgtgtgtgtt acattttttt ttcctctctc cttccggagc      6660
     ccagaacacg atctcgaaag taccaacaaa gggccacctc cgacgtcgcc aaatcaccgc      6720
     tctttagcct tacggggttt tctctctccg ttagatttag atcgaactgc ctatagcaat      6780
     tttgtgttta tttactgcct atagaaattt tgtgtttatt tccttttttt tttctctctc      6840
     tcttatcaca ccgaaaaaaa aaaatttttt tttttcctcg acttgatcgc tgttgcgata      6900
     gtgatttttt ttttttctct tctctctttt ctctctcttt ctcgcaaatg gagtctgagt      6960
     cagaaaggca agacgaatca cacgataatt ttgaacggaa aaacccatca gctcccgaaa      7020
     tgtcatcgtc agacagtgag tctgaagggt caggagaaca agcgggatcc ctatccctaa      7080
     gtctagccat taaggcccta actaagttcg atgggaaaga gtctgtccag gagtggatct      7140
     acggaataga cgatttgaga aaatgcctcc gggcgaagga caaggccgct ttctttaaaa      7200
     tagtgagaac atttgtaagg ggagaagcga gcgaagtaat ccggggaagc gacgaagatt      7260
     gggcttctac aaggaagaca ctcttcgaaa tttacggaga aaagcgaacg ctaaccgaga      7320
     tagagcgttg tctggcagag tcgcgccagg acaacgggga gtcggttgac gcatacgcca      7380
     cacgcgttcg ccagttagga atcaaatatt tggcattgct aaagaaaaca tacacctcgg      7440
     tcgacaggaa aatgataatg gacagagtaa aggacaactt cgtccgcggc ttaaatgtta      7500
     gaatctatca ggcggtggta aattcaaagt tcacggattt gtcggaggca caggccaccg      7560
     catcgcggat agaacgcgat ttcatggccc gagccgatct ctacggccat aactcgatga      7620
     gtagaaggat gggcgaactg agacttagag agacatattc cgcccctgcg gataattttt      7680
     cttccagaca aagacgcctt acaaataaag accacgaagg gttagacgcc gggagagctt      7740
     cgggcgacgt ccgtcccctc ccgggtaggg gtcgcgtaaa gccggggatc actcgggatc      7800
     ccgatgacat gaggtgctat gcttgcaatg agtatggaca tatagccact ttttgcagga      7860
     acagagggcg caatcagccg cctagagacg cccgggtgag caaccaggtg gttaggcaaa      7920
     ccgccgaaca gggtccgccc gacggtaggc cgcatgggag cgggcaggga ccacttaacg      7980
     ggactcgttc ccgaaacaac tcagaggttc cttgctcgta ctgcgggaag ctataccacg      8040
     gaatcgaaac gtgttatacg aggcggaatg cacttaatcg cgcagcgaga gaaggaagag      8100
     agccacacag agggttcgaa aaccccgagc aaaaaaattg gagaggtgaa agaaacaatg      8160
     acccacccgc gggccaaagg tcgggaaacg ccagagctcc gcccggaacc acgccggctg      8220
     ggggagcaat gtttactcgg cagtaaaaac cggcgagaaa gaatgtggaa aagaatgtga      8280
     aaaacaggaa tcagttgtgc tgaccctggg gggattgatg gaggacacca cggtcacact      8340
     cctcgataca gggagtcaaa tatccgcagt gaaagaatcc catgtagcgc ccgacacccc      8400
     ggttgatctg ttagacataa agcgcataac tggcataaat gaacatccga tccacacact      8460
     cgggaaggtt aaattgccct tgagtataaa tgggttagaa gtgaaagtag attttgagat      8520
     agtgcccaat gcatttagga tacgggaagg gtgcaacgcg attttaggag cagatttatt      8580
     gagggctctc caagcaaaga tcgattacga gaacaacaca tgtatattaa tgggcgagcc      8640
     ctttcccatt gtgagccccg aggattgggg acaagaggtg acattgcctc ccttttcaga      8700
     aaaccgggtt tttgtggaga ccaagtccga ccgggaaggg atcatagagg ccatgaattt      8760
     aaatgagttc gtagcgaccg cgcattgttt tgttcaaccc cggcacgggc gagctgagat      8820
     tttagtcgcc aatgtgagtg acgaacctca aaagataagg ttaccatccc tgccagtggt      8880
     ggaaggtgag attctccctt cccccgctcc cgtggaggtg tcacaatgcg gacgtacgcc      8940
     cgagtgcggt acggactcag gagagagaac agagagggag agagaggccc aattagtgaa      9000
     ttctctccgt ttagaccacc taaaccccga agaacgcaac gctgccgaaa cagcgtgtct      9060
     agagtataag gatatcttcc ttttgccggg agataaattg acgtacacag ataccttaaa      9120
     acacagcata ccactgaaag agggcacggg aataatattt gttcgtcctt ataagatacc      9180
     cgttcaacac gaagaacaag tccacgaaga aattagtaaa atgttagaca ataagctaat      9240
     cgagcccacg accagtccgt ataattttcc tttagtgatt gtgaaaaagc gtccggacgc      9300
     atcagggaag cagaaaatta ggatttgcat tgacacccga aagttgaatg aagccacggt      9360
     ggagagcttc ttcgcgttac cctccattca agacctctta atgcgcatag gtggagacgt      9420
     cacgtatttt tccgtaatag acttggcatc atcgtttaat cagattttgt tagacgagga      9480
     cgccgcggaa aagtgctctt tcacggtttc acgtaacggg ctacagcaca ggtacaagtt      9540
     cacgcgtatg ccgtttggcc taaccagcgc gccctttacg ttccagagat tgatgagcat      9600
     cgtactttta ggtttagacc ctcagttacg aattttttcg tatttagatg atttgatagt      9660
     tgcaaaccca tgtataaagt cccatacagc ggcgctggga gccctgttcg ggcgactgag      9720
     agaacataac ctaaaaattc aacctgataa gttagatctg ttcaagaaaa gtgtggcatt      9780
     cttgggtcac gtggttagtc gagagggtat acaggtctgt cccaacaaag ttgccgcctt      9840
     ggagcagacg aacccaccgc gagacgtccc agaactccgt cggttcctag gagccgcgtc      9900
     gtacctcaga aaatttattg aaaacttcag tataatagcc aaacctatgt ttgacctcgt      9960
     gaagaaggat aaagccttca tttggagtga aaagtgtcag gagagctttc agagtataaa     10020
     aagggctcta acctcagcac cggttctgag acacccggac ttcggagaaa atgcagatcc     10080
     gatgatcttg acaattgatg ggagtcgcca gggcttggga aatgtgctgt cccagggacc     10140
     ggctgtggga aaggaccgac caatttgcta taactctcgc accctgtccc cacccgaggc     10200
     aaattatccc agtatccatc gcgaattgtt gagcttagtg tgggccgtta cctccctgag     10260
     accatattta tacgcgcggt ctttcatatt ggtgaccgac tgtaaacccc tcatatattt     10320
     gaatagcgtt ccgatgaaca acgcgtcaaa ccgcctcgtc aagtggaaac tacaactttt     10380
     agagtttaaa ttcacattag tccacaggcc gggcacggct cgctgcctcg ccatggcaga     10440
     tttcctatcc cgcgtgaaca ccaacccaca aacgatgaaa aacgtggggg accaatccgc     10500
     ggaaataggc gtagaggaag aagaagaacc aaaaagcgat ctaacaaaaa tactactaga     10560
     cagccatgac cccgacgtag gggaagtacg ggtaagctgt tgcgtcagcg cggtagaaac     10620
     gagagctcag cgaaagaaaa gaggagacgt aaagaagcca gtcgaagcag ccccgcgaag     10680
     agacaccccc ccccgtgacc gcggaaaacg agcaggtctc ggggaaggag cagaggacgc     10740
     gagccgcgag cgcgccgaag aagggagcgg ggacagagtg taccgaccct cagttaggtt     10800
     cacaaaattc aggtgcatca gagaaaagaa agggagagag aacacaaaac aagcaagaca     10860
     accccccctc caacgcgcca ctgaaccata atcagaccga aaacctttcg gccgtcacac     10920
     ctcaatcgcc agagccgccg agacaaagtg gagaaatgag cgataaagaa aagaaggcca     10980
     tcatgtacac ctttcatgat agcccactca gtggtcacgc cggtatcgag cgaacgtacg     11040
     ctcacctgaa aaataacgga tataattggg cagggatgaa atcggacgtc acacggtacg     11100
     ttaagagttg cgaatcgtgt cagctgaata agcaccatta ttcgcaattc actaacgcac     11160
     ccatgatgtt aacagaaaca ccaagtgcac cccttgaatt ggtatcgatt gacattgtag     11220
     gccctttacc ggcaacaaac attaataagt acaccgttat tctctctctc gttgatcact     11280
     tcaccggata tatagaattc tacccgttgg tggaccaaaa agcacccacg gtggcaaaag     11340
     tcctgataaa cgagtttgtt tcccggttcg gcattatgaa gaggctcctc acggacgggg     11400
     gaagcaactt cacctctgac gtaatcaaag agatgtgtaa actgttgggc gttaaaaagg     11460
     tctgcactac accttatcgg ccgcagacaa acgggctttt agaacgcaga cataaagttc     11520
     tggccgagta cctgcgacac tacgtaaatt cagaccaggc cgactgggac gaatggctcc     11580
     cgttggcgag agcctgtctg aatatattgc ctaacaccag ttcaagttat tctccgtttg     11640
     aactgatgtt cgggaggtcc tttgaaatgc cgagaacatt gatgcaaccc ccaactctgc     11700
     attatgcaga agaggattac atccaagagt tgaaaacgcg catgagaacg acgtggcaac     11760
     tggctcggag caatgtattg aaaaagaaaa taaagcgcgt ggataaagcc aatgagacaa     11820
     aaaaatttcc aaagtttaaa gtaggggatt tggtcttact tcatgatccc acggtcaagc     11880
     gcgggaggtc caagaaactc gatagccagt atgttggacc ctataaaatc attaatcgta     11940
     ccggtcctgt aaactttgaa ataaagaaag ggcggaaatc gcagaacgtg cacgcggacc     12000
     gcttgaaacc gttttgcgaa cgataagact gaacaaatgt gttgaaaaat aaatgtagat     12060
     tgagtacata ttgaatgtaa attcaatgta aattaaattt aaaaacataa ttaggcaatt     12120
     gctaccattt cggaagttgg tagataatta gtggagcagt aagtgtaaat aataatttta     12180
     agaataacat agtaatagga gtgtataatc atttagatcc tggaaaataa tatgaagtcc     12240
     cagacgccaa gagcaggcgc actgcggctg gtagcaacat aattaataaa acagatatca     12300
     tcagatgggt atcaattgtg tatcaaatgg ttgttaaatg ggtatcaaat gaatatcaag     12360
     tgggtatcaa atgcgtatca aacgtgacat gtatcaaatg agcatcaaac gggtatcatg     12420
     tatcatatat gcgtcaaacg gatatcagat aggaaccaga tagtataaaa ggagtgccgt     12480
     ttctaacgaa attgttgata aagtctctcg cgaatttttt tttggtgtga aactctctta     12540
     cgaagttttt tttgtgaaat tttgttgtga aaagttatga aaaggtttcg tggggcctag     12600
     aattcccagt tttatgaagt tttttttgtg aaattttgtt gtgaaaggtt atgaaaaggt     12660
     ttcgtggggc ctagaattcc cagttttatg aagttttttt cgtgaaattt tgttgtgaaa     12720
     ggttatgaaa aggtttcgtg gggcctagaa ttcccagttt tatgaagttt tttttgtgaa     12780
     attttgttgt aaaaagttat gaaaaggttt cgtggggcct agaattccca gttttatgaa     12840
     gtttttttgt gaaattttgt tggaaaattc ccggccggga cacaaagaat tcacatgaag     12900
     ttcgtccaac acaaccttac ggaaagcccg tcatcgagaa attctgagtg caccaaggga     12960
     aggactcgtt agcggaaaag ctcagtagag cgttgccaga aataaggttg gaaagttgag     13020
     gcacaaagaa gaagagaagg ttagagattt ttaatggaga ctttaacgca aggttaaaga     13080
     ttttaacgga gactttaacg caaggttagg ggttttaaaa gagactttaa cgcaaggtta     13140
     gaggttttaa aggagacttt aacgcaaggt tagagatttt aatggagact taaacgactt     13200
     aacggagacc ttaacgcaag acgaaagagt tcagcagaga cttgaacgca aggtgaatga     13260
     ttttagcgga aaatttaaca aaatttaacg cgcggttaca gagtttagcg gaaggttgac     13320
     gaattgaatc cttttttttc tcattgcgga aattttaaca ggcctaaagg tcaataaccg     13380
     tagaggggtg aagaggtaga agcctccacc acaagggaac aacagcgacc ttgcggacct     13440
     cagctaaaaa cccattcgaa gagaagccac gcgcagttgc cgaatgcggg aaaataggat     13500
     ccttcgcggt ccaacaccaa tgtacaaata gaaatagaaa aattatcatt aagcgtagaa     13560
     aatagcatga tttatactta ctagggttaa tatacataac agtaggacga taagaaatcc     13620
     aaagctcggg tacgcggaat ggcacaaatg gaaaatgtca caaaaagcaa ttcttccttg     13680
     gaaaacagct aaacgcccaa gaaattgcaa ttctcggcaa aagccgcgaa gtattgatac     13740
     gaattatgta acgacaagag ctgtgcttgt cggcaaagta aactattgat tttttttttt     13800
     cttccctcct cttcaggatt taattaaagt agtgattttt ttcctctctt caggaattca     13860
     tgattaagta cctcggttag aataaaaatt atgtgctttg agttagataa aatacgctat     13920
     gaattaagaa tatatacttc gaatttagaa aataatataa aacttgagtt agaaataata     13980
     tatactttac gttagaggat aatggtatat actttgagta gcgagtagta ttttaattag     14040
     aaaataatgt atactttaga agctagataa gaatctagat ttcctttttc cttttggata     14100
     agtgtgagaa taatctcgtt tctgtggtag tagttgagct gactttatac tattcgagaa     14160
     aagttcctta ggaactaaga tactaaaaat aatttctttt tttttcgtgt aaataaaatt     14220
     gtctcttaaa tatgaaacaa agtcgaagat ttggaatttc ctctagggaa gaatagggag     14280
     tcgagcaagg aaaataaatt ttcagaattt tcagttttcc cttttttctt gtttattgaa     14340
     aaaaaaatcc tttaaaaata gataacaaac gcaaagaaaa aaaaaaaaaa aaaaaaaaaa     14400
     aaaaaatttt aaaacattca gccgggtagc aaataaagca tttcttccga aaaccattct     14460
     gccggtagtt gtgaaaaatc cactgcaaca cagaaaaaaa aaaaccctta gtttcggaag     14520
     aaggaatagg ggaagagagt caaaaagaaa atcatttttt tttcaagaaa aagaaaaaaa     14580
     ggggaaacta cgaaaattaa acgaacctct ctcaatttgg acaaacggac gccgcagaat     14640
     ttggaacagg gaggagcatc cctcgggcca aggcccctca tggaggtgat aacaaaatcc     14700
     atttattgta acgcgtccga taaaaacctc gatagaagcg cacaaatcaa cttcaaagaa     14760
     cactaggacc ccggccggga catcggtgtc cgggtcctgc ttggggccgt aataggagca     14820
     cagggccacg tcccggatcc tgataaggcc ttggtcataa tgaccaacaa gagtttgcgg     14880
     ctcaaagtcg cctagaacgc agaactgcgt tataaacttt ttaatataag aaacgttcca     14940
     cttgcgcaca aagaaaacgt ccaaatgacc aaagtcgatg tgagtcgccc gggcaaaaag     15000
     tgaaaaatcg ccaaacagac ggtgttggcc tgaaaagtat catggaggag acattctgag     15060
     agcacgagag tcaggagaga actaacgagg ttaccaaaaa ctaacaacgg aaaaaaatta     15120
     tacacctgca caggtaagtt gtgaaacaaa aacgtcgaaa tatatcaaca ttgaaaaaag     15180
     ggtgagagcc cacttattcg aagaaggacg ggtaaacctt cgaattactt caaaggtccc     15240
     taaaacttca tgccttcgaa catcgattcg accttcttgc tttgaatcgt tcttttctca     15300
     ctctactttt ccttttatct ctccactgct tagcattttc actctcctga atgaaattgg     15360
     tttattctct ctttcttcaa ttattgcctc tcacatacgt tgttactaca tatcttgtcc     15420
     tttgttgttc gcatcctacc tctctatcac atagggagac gcaacgaagg aaattatcct     15480
     aactttaacc gccacggaag cgggagagaa acgggaaggg atcaaagatt cgtctgtaac     15540
     gaataataag tgtattatgt gtccattaat gtaaataaaa agatttatct gaaaaaaaaa     15600
     aaaaaaaaaa aaaaaaaaaa aaaaaatttt ttcataatgt ctagtaatta cagcttttag     15660
     aaacgaataa cggtccaggg agagtgggaa ctcctggaaa atatccttga cagaaaatga     15720
     ggagaagtaa gacaaattgc ataacctgat ttaaaagggg aaccgaggga taacaaaatt     15780
     aggtaccgag ttctgactct tgaaacgacg aaaattgtgt tacagatact aactgtaggg     15840
     tgtttggacc cagcgacgcc agtagtactg gacaaacaat ccgtcttcaa cgttacagaa     15900
     ggacggacaa acccggggct tctcttcaaa gaggccttcc agttcaaact agtacaggac     15960
     cattggacgc taatctccga ggtttccaca gagcacctct acgaccaagc ggacaaagcg     16020
     aaaagtctgt ttcaatcctt ggctggaata aggaacaagt acgagtcttc cagtgtctca     16080
     gacacagact taagtaatgt aggaactgaa atattgaagc tgcacgttgg attaaaaaca     16140
     cttaaggcat tactgtcagg cgatggtaag gccgaactga gagaaaaaag gaatgctgtc     16200
     gtagaggggg gaaggtggtt gcaaagatta atgtcactgg taacaagccc tgaaatacag     16260
     ataggtggga agaaacgaga aagtgactgg gtagaatact ccatggaaac aaattacacg     16320
     gggaagaaag aggtggcaac aaaaagggta aaaagggtaa gaaaagggat cttcaactca     16380
     ttagggacgg ctgtaaaact tatttccgga aacttagacg cggccgacgg ggaatacttc     16440
     gagcaaaagc tacgagaaat tagcgaagga acccacgata tttatagtct ggcagcacag     16500
     caaacgacac tgatgtctgc tacagtacat accttaaacg gtacattagt aaattgggag     16560
     gaaaacagag taagattaga agaaaccata ggcaacatca ccgcagtaga aaggggacta     16620
     aaccatgacg tcgcgaacgt tgtcgatcag ctgcacgtta ttcgcacaga aacagaggca     16680
     cgcaacattc ttactgaatt aataacctcg gcaaaggata acatgcagtt gatattgaaa     16740
     acgttcgagg acgcacggca aggaaggata aaccccctag ttttgtcacc cgaaaaattg     16800
     ataccagaac tccggaaaat aaaacttccg gctggattgg cttttccgat cgaacctaca     16860
     tattcaggct tccattattt ctacgacatc gtggacgtat cggcattcac agtcggagga     16920
     aacctaactt taataatcaa aattccacta gtggactccg aaacgtacac gatgaacgaa     16980
     gtaacgccgt tcccgtactc ttcgccttat aacaatggta catacatttt cataaaaccg     17040
     gatagcgact tcgtaggtct ctccaatcag gatttacatt atgttctctt ttctagacaa     17100
     caacaaaatt tatgcaaaag agtcagcaca ggacgcgtat gcccagcagg ttcgataatc     17160
     cacgatttcc acagccacac agaaagttgt acgataggaa tttttaaaaa cagaatgtca     17220
     atcggatcag agtgcgactt aagagtcatc gagttaaaaa ggcccctctg gataaaaact     17280
     ccaacaacaa acctctggct attcgtaatc cctgactccg agtcaggaat aataacgtgc     17340
     agggacggga cactcacaac aggcaacgcc gtaaaagtcc cattgagcgg aaggggattt     17400
     cttagcctga aaggaggatg tatgtacata tcggacagtg cgcagcttag gggggtggga     17460
     aattataagt cgtttatcga cagccaagcg ccagttatcc cgatgaactc aatatcatta     17520
     cccatacttg ttgaagagac aatggcaaag gtaaaaccag cagaaataaa tattaccccc     17580
     catctgctgc cgatgaatat gcacctacac gaactggtcg agacgggaag gaaaatcagc     17640
     gaaatcaaaa atttgttaga cgcggcggaa atcgacagac tccaaacaag ccaggacaat     17700
     cgccacgtag catacatatc attattttcg cttctattgt ttgcacttgt tacgtacttt     17760
     agccgaaaag caataataaa gggaacgaag gaagttattg gtaagtgcat gataaaagga     17820
     gtaccaaaac cagaggtaat ttaccaacaa gtgccgttgg gaaaattaag agttaggagc     17880
     ccggaaagtc aaacaagcac agaggtaaat agcacgagcg ggggggaaaa tgacgaaggg     17940
     aacgcggaag gtgagatgga gacagaaacc accgaattcc gtaactcgcc atacccccgg     18000
     cgaatgagga agaacaaaga ccgcgatcta gtctagggtc tcaaatccct cggttgccaa     18060
     atgcacatcc cactcgaaag aaagtgccta gaaaggggat tattttccag gaaattcctc     18120
     ctccatttaa cctgcatgta aagttattca acgaatgcaa ttttgaaggc gcgtgaagat     18180
     acgcggtcga atacgatttt aagcatgatt ccgattaata taagtgtaat gtaaaaatat     18240
     ggattcttaa gttaagatta tatatatgta tatattaaga cttgcattca gttactcgaa     18300
     ttattaaatt caagataatt attttccagg aaattcctcc attttttttt aggatatgat     18360
     ggttattatt attgcaaata tggattctta agttaagatt atattgatgg ttattactat     18420
     tgcaaaatat ggattcttag gttaagatta tattgatggt tattattatt gcaaatatgg     18480
     attcttaagt taagattata ttgatgatta ttactattgc aaatatgtta agttaagatt     18540
     atattaagaa tacaaaattt ctcaactaca ctcaattcaa aggctgggta cattcaaaaa     18600
     ttaataaatt taaacaattt aaggacatta tgattttttt attgtcgtaa atataatttc     18660
     ggataggatg ggtgtcggtt aaggttatat taagaattgc gttcaattac tcaagttaag     18720
     ataaaattaa gggattattt tagaatttta atacaactta gaaaagggca gcatttaaag     18780
     gggagacctt atccaaactt ggaatttact aaataaaaat ttaaggattg cgttaattta     18840
     ctgaaaatat taaactaaga agatttaaga atttacagtt aagtttaaat gcaaatagct     18900
     tcagctaccc ggtccattac gggattttag aaagaatcga tatatcttat aatgttagac     18960
     ttcttcaaat aagtgtattt taagaattat aaaagttctt aataagtatg ataaccagtt     19020
     aacaaaaggt aattttggat tcggaatgta ttgtcaatgt agctttcaca atttcaaatc     19080
     attctcgatg aaattcagaa tttaacttgt tgtattttaa tgtcatgtat tatgtatttc     19140
     catgtaagcc gaacttgaac tttcaattta aattttatta tgaatagtct cttaactttc     19200
     aatttaaaat tattctcgat gaaaatcaaa aatttaattt ctttgttgta ttttaacttt     19260
     taactttcaa tttaaaattc attctcaatg tgaccttcaa aacttggaac cttcaattta     19320
     aacttattcc caatacaatt caaaattcaa caaagtattc aattgtcaaa gctcaaagct     19380
     tcaatattcc cactagagga agcagcccgc catcacactt ctcttcggcc tgcgccgaaa     19440
     gttggggggg gagggg                                                     19456
//
ID   Gypsy-11_BTa-LTR repbase;    DNA;    INV; 950 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-950
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 685-685 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 950 BP; 206 A; 257 C; 222 G; 265 T; 0 other;
     tgtggtgata tgggataaat ggcaacgttg cggcttggag ggcaacaagg caggagccac        60
     aacaccacct agccttattt tcagcggaga agagagatag cggcggcctg atcgtgcgcg       120
     agggagggag acatgcagtc actggcgcaa gtcaaactac ccctgtcttc cctcccccca       180
     ccgacaggcg cagccaggca acccggccga gctccacaca aaggccgggg cctgaatctc       240
     gaccggtgac ttttttttat ggagccatta tcaccgcccg ctttaccgaa ggttcacgct       300
     ccagaaccac agggggcttt aggctctcgg caaaatgcgg gggccacaag agtcagccaa       360
     gagtgtccaa ccaggaacag cgctctcgcg gggcccccaa atcagccaaa ctgaccaggg       420
     gctaccttgc ttgaccagcg acaaagccgc aacaagttgc aacaccctat cgcagcatcc       480
     ccttctctga cccagatcca ccaatgggcc aactttgggg gttggccgac gaaaagtgga       540
     aaaggaacca aggatgggtc cgggagctcc tagaggaacg agaggagagg cactcagatt       600
     ttagccttcg agaggcatcg agctcttttt ccccattttt ccatttttgg acttcatttt       660
     ttttcatcga gccactttcc ggtttgtgag attttcggac attttttttt gctctccata       720
     tatttttctg ttcgtgttcg ctgttattga catttttgcc ttcatatatt tttctgttcg       780
     tggttgctgc tattgacatt ttttttgccg tcatatattt tctgttcgtg tttattgtta       840
     ttgacatttt tttctcgctc ttacgttata ttatacattc cattccgagt ccagctccga       900
     tttttttctt tctttcctct cacctcacat accgggactc gctttccaca                  950
//
ID   Gypsy-11_CFl-I repbase;    DNA;    INV; 4760 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4760
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1028-1028 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           78..1070
FT                 /product="Gypsy-11_CFl-I_1p"
FT                 /translation="MRSWLYALPKEQLAVLAEGYGLESTGTLDDIRRRMRE
FT                 YADTHADEFATDPREQAGPSGALPQVVITGSSPLSRDAPVDFATPALPDYR
FT                 AINQLRKSGYHFDGRDPAAFLERLAEFRENYHIVEEQLLRGLSELLRGDAL
FT                 LWYRNHRASWTSWQGFEAAFRLQFLPHRYDASLRREIENRHQKANETFAQY
FT                 STVMMTLMRRAGGFSPVMQFEYLYDHMHPEYKFYIRRRDIGDISELQARAR
FT                 EHEDLVSERQEALKREKAETKPAVAAAYNKAECCWRCKQRGHTRRQCRRPA
FT                 KKFCSQCGRDGVLTAQCHPPAGKADGAGEKVAAVTPSPE"
FT   CDS           join(908..2419,2266..4329)
FT                 /product="Gypsy-11_CFl-I_2p"
FT                 /translation="MQAARAHAPAMPTPREEVLLAVRTRRGAHRAVPPTGG
FT                 KSRRGWRKGRRRNSQPRITFKPRPHTPISIGEFTFDALVDGGSEISLISER
FT                 TAETLKRAGFAWTIGESQIQLADDRDAELAGRMXLPVEAAGRTTTHTFGIL
FT                 PGLSSEILMGVDLQAKLRISTPAPPLRVLRWHQHCCTIEGLAGRTAEEDKR
FT                 LQEFLRGELAKFDTVKGPTDRAQHSIRLIDDTPIKQRYRPRNPAMQAVIDA
FT                 EVEEMLAQGVIEPSYSPWSSPIVIVKKKDGRQRFCIDFRRVNDVTHKDAYP
FT                 LPQITATLDKLRGARYLSTLDLKNGYWQVPLAPSSRPITAFTIPGKGLFQF
FT                 KVMPFGLHSAPATFQRLLDTVLGPELEPHVFVYLDDIIVISRTFDKHLELL
FT                 RETFRRLRDARLRLNPEKCRFCVDRLTYLGHVLTGREFGPTPGKFKPWPTG
FT                 LNRNPSSKYGQFVGMASWYRRFIPAFSTIAAPLTQLTKKNARWKWGEGRPP
FT                 RSLSLNALIRPVRGDGVVVPPFHPGFLHDRGPTHAIDEEKRPMEMGRREAT
FT                 AFAQLKRALSSAPVLACPDFTRRFFLQTDASTTGLGAVLTQNFEEGERVIA
FT                 YASRTLNAAERNYSATELECLAIVWGIRRMKSYLEGYAFTVVTDHQALRWL
FT                 QKIESPTGRLGRWVFELQQYDFDVKYRRGVLNRVADALSRHPATCAAKHQG
FT                 CAWYRRKYEGVQQDPTAHTDYRIEDGKLYRLLYHSLNFKDTAAEEQWKLCI
FT                 PKEARNDILRRYHDAPTAGHMGIAKTIARIAEFYYWPGMFRDIANYVRTCR
FT                 NCQTHKVAQQRPAGTLHATYVSRPWEQVTLDLVGPLPRSHQGHTWLFVMQD
FT                 RFTKWVELVPLRQATASAVTKALTERIILRHGRPDSVLSDNGTQLRSRKME
FT                 ERLRAWNIRHVTAPAYSPHCNPVERTNRTIKTMVTQYVEKDHRAWDEHIPA
FT                 FQFAFNTALHDATGYTPAFLNHGRELRGPEDTDQPTTEHNAPDNLHQKLTE
FT                 AYELVKIQLAQAFQRQKHHYDLRRRSWKPSIGDWVWKRDHPLSKKSEAYNA
FT                 KLAPKFSGPYEIRRIVSPVIMDLRSKRGKWIRHVHVQDLKAAHVNKNNNNF
FT                 ISPEDDTTSSRGSDDTSFTFERTVKRDGXDKSRDPGRHRSPASGIRGRHRR
FT                 PGPGDGAGTAGHRHANTSAATEGRDRHPAVRPY"
XX
SQ   Sequence 4760 BP; 1141 A; 1453 C; 1345 G; 816 T; 5 other;
     ttggcgcccg aacagggacg tttttttttt ttttcttctt ttcttgtttc atttattgtg        60
     aggtgtgagt gtgcattatg aggtcgtggc tatacgcact cccgaaagag caattggccg       120
     tgctagcgga aggctatggg ttagagagca ccggcactct cgacgacatc cgccgacgca       180
     tgcgggaata cgcggacacc catgcggacg aattcgcgac cgatccgcgc gaacaagcgg       240
     gcccttccgg tgcattaccg caagtggtta tcacggggtc ctcgcctttg agccgcgacg       300
     cgcccgtaga tttcgcgacc cccgcgctgc cagattatcg cgcaataaat caactccgta       360
     agagtggtta tcatttcgat gggcgcgatc ccgccgcctt cctggaacgt cttgccgaat       420
     tccgcgaaaa ctaccacatc gtcgaggaac aactcctgcg cggattatcg gagttattga       480
     ggggggacgc ccttttatgg taccggaatc accgggccag ctggacctct tggcaggggt       540
     tcgaagcggc atttcgattg cagttcctgc cccatcggta cgatgcctcc ctccgccgcg       600
     aaatcgagaa ccgtcaccaa aaggccaacg agacattcgc gcaatactct acggtgatga       660
     tgacgctcat gcgccgggcc ggcggattct cacccgttat gcagttcgag tatttgtacg       720
     accacatgca tccggagtac aaattctata tccgacggcg cgatattggc gatatttccg       780
     agttacaagc acgcgctcgc gaacacgagg acctggtaag cgaacggcag gaggcactca       840
     agagggaaaa agccgaaacg aaacccgccg tggcggctgc ctataataaa gccgagtgct       900
     gctggcgatg caagcagcgc gggcacacgc gccggcaatg ccgacgcccc gcgaagaagt       960
     tctgctcgca gtgcggacga gacggggtgc tcaccgcgca gtgccaccca ccggcgggaa      1020
     aagccgacgg ggctggagaa aaggtcgccg ccgtaactcc cagccccgaa taactttcaa      1080
     accgcggcca cacaccccga tcagcatcgg ggagtttact ttcgacgccc tggtagatgg      1140
     ggggtccgag atatcgctga taagtgaaag aaccgccgaa acattgaaac gagcgggttt      1200
     cgcgtggact ataggggaaa gccagataca attggcagac gatcgagacg cggaactcgc      1260
     ggggagaatg amcctgccgg ttgaggcggc cggccgaacc acgacgcaca cgttcgggat      1320
     attaccgggc ctctcgagcg agatactaat gggggtggac ttgcaggcga aattgcggat      1380
     aagcacgccg gctccgccgc tgcgtgtgct ccgatggcac cagcattgct gcaccatcga      1440
     aggcctggcc ggcaggaccg ccgaggagga caaacggctc caagagttcc tgcgaggcga      1500
     actcgctaaa ttcgataccg tgaaggggcc caccgatcgg gcccagcatt ccattcggct      1560
     gatcgacgac acgccgatta agcaaagata ccgcccgcgc aatccggcga tgcaggcggt      1620
     tatcgatgcc gaggtggagg agatgctcgc ccagggggtc atcgagccct cgtacagtcc      1680
     ttggagctcg cccatcgtga tcgtcaagaa aaaggacggt cggcaacgct tctgcattga      1740
     cttccgccga gtcaacgacg tgacgcataa agacgcgtac ccgctgccgc agatcaccgc      1800
     gactctcgac aaattgaggg gggcccggta tttgtccacc ttagatctga agaacggtta      1860
     ctggcaagta cctttggccc cgagcagccg gccgatcacc gcgtttacga taccggggaa      1920
     ggggcttttc caatttaaag tcatgccgtt cgggttgcac tccgccccgg ccacgttcca      1980
     acgattactg gacacggttc tcggacccga attagaaccg cacgtgttcg tttatctcga      2040
     cgatatcatc gtaattagcc gaacgttcga caaacatctc gagctgctta gggagacttt      2100
     ccgccgcctt cgtgacgcgc gcctccgtct gaacccggag aagtgccgat tctgcgttga      2160
     ccggttgacg tacctggggc acgtattgac cgggagggaa ttcggaccga ccccgggaaa      2220
     attcaagccg tggccaactg gcctgaaccg caatccgtca agtaaatacg gccagttcgt      2280
     ggggatggcg tcgtggtacc gccgtttcat cccggctttc tccacgatcg cggccccact      2340
     cacgcaattg acgaagaaaa acgcccgatg gaaatggggc gaagggaggc caccgcgttc      2400
     gctcagctta aacgcgctct gagttccgcg ccggttttag cttgcccmga cttcacgcgc      2460
     cgtttcttcc tccaaaccga cgctagcacg accggactcg gcgcggtgtt gacgcaaaac      2520
     ttcgaggagg gcgaacgcgt aatcgcctat gcgagccgta ctctaaacgc ggccgagcgc      2580
     aactatagcg ccacggagct cgaatgccta gctatcgtgt ggggcatccg gcggatgaag      2640
     agctatctag aaggktacgc cttcaccgtc gtgacagacc accaggccct gcgatggcta      2700
     cagaaaatag agtctccgac cggacgcctc ggacgctggg tattcgagct ccagcaatat      2760
     gattttgacg taaagtatcg tcgcggggta ctcaatcgcg tcgcggacgc gctatcacgt      2820
     cacccggcga cctgcgccgc gaaacaccag ggatgcgcct ggtaccgccg aaaatacgaa      2880
     ggggtgcagc aagaccctac cgcacacacc gactaccgta tagaggacgg aaaattgtac      2940
     cgcctcctct accacagcct caacttcaag gacaccgccg cagaggagca gtggaagctc      3000
     tgcataccta aggaggccag aaatgacatc ctacgccgat accacgacgc ccccaccgcc      3060
     gggcacatgg gcatcgcaaa aacgatcgcc cggattgccg aattctatta ttggccgggg      3120
     atgtttcgcg acatcgcgaa ctatgtgcga acctgcagga attgtcaaac gcacaaggtc      3180
     gcacagcagc ggccggcagg aacactccac gcaacctacg tcagccgacc gtgggagcag      3240
     gtaacgctcg acctggttgg accactgcca cgctcccatc aggggcatac gtggctcttc      3300
     gtgatgcagg atcgcttcac gaagtgggtg gagctcgtac ccctgcgcca agcgacagca      3360
     agcgccgtca ccaaagcgct aaccgagcgc ataattctgc gccacggacg accggactcc      3420
     gtgctgtcgg acaacggcac ccagctaagg tccaggaaaa tggaagaacg cctgcgggcg      3480
     tggaacatcc gccacgttac cgctccagct tactctccac actgcaatcc ggtggagaga      3540
     accaacagga ccattaagac catggtcaca cagtacgtgg agaaggatca ccgagcctgg      3600
     gacgaacaca ttccggcgtt ccaattcgcc ttcaacacgg ccctccacga cgccaccgga      3660
     tacacgcccg ccttcctgaa tcacgggcgc gagctacgag gaccagagga caccgaccag      3720
     ccgaccacgg agcacaacgc cccggataac ctccaccaaa agctcacgga ggcatacgag      3780
     ctggtaaaaa tacagctcgc tcaggcgttt caacgccaaa aacatcatta tgatctccgt      3840
     cgccgatcat ggaaaccaag tatcggagat tgggtgtgga agcgcgacca ccctctgtca      3900
     aagaaaagcg aagcgtacaa cgccaaactg gcgcccaaat tcagcgggcc atacgagatc      3960
     cgtcgaatag tatcacccgt tataatggat ctacgaagca agcgggggaa atggataaga      4020
     catgtacacg tacaagacct gaaggccgct catgtcaaca aaaacaataa caactttatt      4080
     tcccccgagg atgacacgac ctcgagccga ggtagcgacg atacaagctt cactttcgag      4140
     cgaaccgtca agcgagatgg aagmgacaaa tcgagagatc ctggaagaca tcgaagccct      4200
     gcttcgggaa tacgaggcag gcaccgccga cccggtccag gtgacggagc cggcaccgca      4260
     ggacaccgcc acgccaacac cagcgcggcc accgaaggtc gggaccgtca tccagcggtc      4320
     cgaccatatt aatcgccgsa aacaggaggc cttcctggca cctccgccac caccaccgaa      4380
     ggcgagggca ccacgccctt acgaacggcc accccggcca ttaagacccg aggccgccac      4440
     caccgaacga ccgactctgc tgcgaccgat ggggccgcag acaccgccac cgattcccgt      4500
     cgaggtggag cccggggtca tcgtggaggt tccacacttc gcggtttatg tatcgcggag      4560
     atacaagccg cgaaccgcca ccggacgctg gatcatccgg ttcacaaggg acggaagagt      4620
     ccgatactgc cgccgactgc cgcagtaaca gcgcagcgaa aatccgccga acatccgcgc      4680
     gatatatgcc cgatgagccg accgaccgac cgaccgacag aatgccccca attcgggcat      4740
     tattttagaa gggggggtga                                                  4760
//
ID   Gypsy-11_CFl-LTR repbase;    DNA;    INV; 1215 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1215
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1029-1029 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1215 BP; 339 A; 370 C; 264 G; 241 T; 1 other;
     tgtaacgatg catcccggtg catcgttacg attcccggca taacatccgc cggaagctgc        60
     cgcccggcag aacacccgcc gggcagaggc aggggcgcgg tgcgcccacc ttttttaata       120
     ctttgcaaaa ccgttgagtc aaaattcggc cgaacatcgc cgaatagagc cgatgtggcc       180
     cgaaccgccg accggcgaaa gcccgcgttc ggctcctacc cgaacccctc cgaacgggcc       240
     cgaccgtacc gttttccgaa aacccgttcg gaaggggtta taccgccgcg cgccgacgcg       300
     ggcaattagc ccgtataaaa agggccacat ttcagctcta attacatttt cctgatccgc       360
     tctaagcagt acgcttcaga agcaatcctg aaaatcctmt caaaagcaca agtagccgaa       420
     gacaaaaggt ggagcgagct ccgtctcaga cgagtgatct cggttctgac gcacaagtgc       480
     aatccgcctg atccgcagct gaaactctca cggaaggtgg agctctgagc cgccccggat       540
     cgagtgttct cgatccagct gcatcgcgca acccatcctt cgcgacacga tcctataccg       600
     cacgtgcaaa ccaccgccga gcgcatacat tttgtgttgt caccgatacc gtcgttttaa       660
     acgctctgcg catctgagaa tcacgtcatc cgccgccgcg tctaaacgca tcttttgcaa       720
     caagcgagcg catatcggca tccagaaata acgtgtaaac gccgccgtta ttaaagcgca       780
     tagattataa tcgaccgaac gcggacttta aatcgcggcg ccgagaaata aatagttccg       840
     cgaaaacacc cgtcgattcc gagaacccga gaattctcgg agcaccggaa tccccgcgag       900
     aaaaagcgcc gcaaaaacgc gcgccgtctc gcgctttcgt aaacacaagc cggcgttcga       960
     gatcgagacc gaaattaaat ctgcatttat tgtcgcataa ttaatcggac aacacagaca      1020
     ttatacacga atatttatac tcacacacac gctcacacac tcatacacac atacacacac      1080
     acctattctg tacatacata catattatta gaataaacac aattaaactg atcacaccgc      1140
     gtattttcat tcaaagaacc ttgcaccggc gatctatccg cgttgcgaaa aacgtccgaa      1200
     aatacgaccg ttaca                                                       1215
//
ID   Gypsy-11_CoFl-I repbase;    DNA;    INV; 5410 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5410
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2292-2292 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1015..1905
FT                 /product="Gypsy-11_CoFl-I_1p"
FT                 /translation="MALSLEEMKVEMEALRAQLAEVQQQVPATQGTPQVAA
FT                 YKSPKLSTFDRANPLAWFSLAEIAFRNAKITVSSTKADFVAEKFDMDTVAC
FT                 VMDLLNEDPRPADLYEQVKRKVINRYGGSPEQRLRQLLRGQVSLDGKPSTV
FT                 LDRMKSLQSGASEAVLRSVFLEQLTEPCRSALSIHNIDSLSELAAAADRYM
FT                 DSAGSFNQISTLGAEVSSPSVNAVSSSLSKIQEMLTQMSSRLDKLEKNSNR
FT                 KSRGRSKSKTAGQDAKSSGDSSVPSNGLCALHNKYGDKAHYCKGNCSWPKP
FT                 SDSGN"
FT   CDS           1896..5012
FT                 /product="Gypsy-11_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LGKLNHSPQVEALREGNSSIASKRLHIRDINSGKLFL
FT                 IDTGADVSVVPKADSDTGPSAFKLHAANNTFINTYGEIKLTLSLRLKRPVS
FT                 WNFIVADVPYPIIGADLLHSYGLIVDVRRRRIIDPFSNTFVVGGITSCSYS
FT                 KVSLLDPSSSWSKILSDFPEITGSKPAEPILAKDIFHYIETTGPPVHERPR
FT                 RLDPVKFKAAQVEFETLVKQGVCRVSKSPWASPIHMVKKKDGTWRICGDYR
FT                 RLNAQTVPDRFPIPYMLDYSLRLSGKSIFSKLDLFKAYYQIPVAPTDVIKT
FT                 AVTTPFGLYEYVFMPFGLRNASQSFQRYIFQALGDLDFAFVYLDDVLIFSS
FT                 SIKEHEEHLRTIFARLKQFGLRLNVPKCEFGKTELIFLGHLVSSKGSQPCS
FT                 EKVEAILDFPLPVTVADLRRFLGLVNFYRRWLPQAASAQAPLFDYTADSKK
FT                 NDQRVIDWSPEAKQAFETTKSHLAKATLLVHPSPDAETRLVTDASDFAIGA
FT                 TLEQLFEGDWKPLAFFSRKFSQAQRNYSAYDRELTGIYEAIKYFKHFLEGR
FT                 NFKVVSDHKPLIYAFIQKSDKASPRQRRQLCFISQFTTAIEYLPGLSNVVA
FT                 DALSRVEVIRLPLELELPELAKEQQQDSELSELLKSPAHSLNLKPIELGHS
FT                 HTSLYCDLTGKIIRPFIPKSLRKRIFDLTHSASHPGTKVTDQLIRQKYVWP
FT                 NMHRDIATWCKGCLDCQQSKISRHVKNEPLQFIAPDDRFRHVHMDLVGPLN
FT                 TSQGYSYILTMIDRFSRWVEAVPLKDISTASVLRAFQESWVARFGAPRFLT
FT                 TDQGSQFESQLFQAYLSFLGCQRIRTVAYHPAANGMIERWHRSFKVAVMCH
FT                 NNADWVKLLPTVLLGLRTAVRSDTGASPADFLYGTNIRVPGEFFLPSDFTA
FT                 DPQIFIEDYREHMKKLRPVPVTHRYKPRAFFFKDLYTCSHVFLRTAAVRKP
FT                 LERPYTGPYKVLERISDQDYKIDYRGTPRVVSTELLKPAHFVPDDLVTPAL
FT                 TKSPQKVQVSTPPIPILKTYSNKKKVTFDTSVK"
XX
SQ   Sequence 5410 BP; 1327 A; 1280 C; 1145 G; 1658 T; 0 other;
     ttggtgaccc cgacgttcga gaggtgagat ttttgctggc agacggtggc catcttggaa        60
     gctccctttg tctccaacca tcggcacagc aaggagagac ggtgcagctt ttcctggaac       120
     tgttgcgtgt tggtatacgc actacacgcc tgttctccgg ggtgctgcgt gttaaacacg       180
     ccttctccgt cgctgtcgct gccgcgtgct tttgcacgct ttgccatcgt cgccgttcct       240
     gctgcgtgct tttgcacgcc ctgccatcgt cgccgttcct gctgcgtcct ctttcacgcc       300
     ctttcaacag tggtatagtg tgtggacagt gcaagcaagt ataacgtttt acataaaagt       360
     gaataagttt taaattaata acttttgtag tgacattaag tgactaggtt taagtgctta       420
     cgtaggttaa gacgtgatga agggacaggt gtcctcttac ccctttcctt agccgctaat       480
     ttttgtaacc aattacttta gttagatagt agtggtttgt gctttgtgac ctgtataatc       540
     attagagtaa tattatttac tgctcattgt tttcgtcgca gtaacatttt ctttttattg       600
     taatctttgt gtttgccgta gcctctttac agctcgcaag cacactacac tacttacaat       660
     tcgaatcagt ggctcattaa ttttgacgtt ggtacctgcg agtacattta attatttgtt       720
     acattagcac tgattccagc taggtcgaaa acctgtggcc agcctattta cagcgcacag       780
     gtgtccctta tctagctttt acaggtcaac atttttttat ttttacaatt tttgctgctc       840
     ctgcgtggac agaccaggcg tgagttttat acatgtggaa ctgttgcgta gtttagcttt       900
     tgcgaatccc tcagactccc agagtagaac ttggaccttc ggtgtgcatt cttttacagt       960
     gttttcttct cgctggcatt ctgagggctg aatattcctc tgattttcgt aaccatggct      1020
     ttatcattgg aagaaatgaa ggttgagatg gaagctctca gggctcagct ggctgaagtt      1080
     cagcagcagg tgcctgcaac tcagggtact ccacaggtag ctgcatataa gtctcccaag      1140
     ctttctactt ttgatcgtgc caatcctctt gcgtggtttt ccttggcaga aattgccttt      1200
     cgcaatgcca aaatcacagt ctcctctacg aaggcagact ttgtggcaga gaaattcgac      1260
     atggacactg tcgcttgtgt catggacctc ctgaatgaag atcctcgccc ggctgacctt      1320
     tatgaacagg ttaagaggaa agtgatcaat aggtatggtg gctcacctga gcaacgtctc      1380
     agacagctgc ttcggggcca ggtctctctc gatgggaaac cttcaacagt tttagacagg      1440
     atgaagtcct tgcagtcggg tgcttcggaa gcagtcctca gatctgtctt tcttgagcag      1500
     cttaccgagc cttgtcggtc cgcactgtca atccacaata ttgattcgtt gtcggagttg      1560
     gccgcggctg cagacagata catggattca gctggatctt tcaaccagat ctcaaccctt      1620
     ggtgctgagg tttcatctcc cagtgtcaat gctgttagtt cttcgcttag caaaattcaa      1680
     gaaatgttaa ctcaaatgag ttcaagactt gacaagctag agaaaaactc taatcgtaaa      1740
     tctcgtggtc gttcgaaaag taaaacggct gggcaggatg ccaagtcttc tggtgattct      1800
     tcagtacctt ctaatggttt gtgtgccctc cacaataaat atggagataa ggcacactac      1860
     tgcaagggca actgctcttg gcccaagcct tctgactcgg gaaactaaat cactctcctc      1920
     aagtggaggc tttgagagag ggtaactcat caattgcttc taaacgcctc catatccggg      1980
     acataaactc gggtaaactt tttcttattg acactggtgc tgacgtttca gtagtcccaa      2040
     aggctgactc agacactggt ccctctgctt ttaaactcca cgcggcaaac aatactttta      2100
     tcaacaccta tggtgaaatc aagctgactc ttagcctcag acttaagcgc ccagtttcct      2160
     ggaactttat agttgctgat gtaccctacc ctatcatagg agctgacctc ttgcactcct      2220
     atggcttgat tgtggatgtt cgcaggcgta gaattataga cccgttctct aacacttttg      2280
     ttgttggggg aattaccagt tgctcctact ccaaagtcag tcttcttgat ccatcttctt      2340
     cctggtcgaa gattctctct gattttccag agattacggg tagcaagcct gccgaaccta      2400
     tattggctaa agatattttt cactacattg aaacgactgg tcctccggtt cacgagcgtc      2460
     cacgacgctt ggacccagtc aagtttaaag cagctcaggt tgaattcgag accctggtca      2520
     agcaaggtgt ttgcagagtc tcaaagagcc cctgggctag ccctatacac atggtcaaaa      2580
     aaaaggatgg gacttggcgc atttgtggcg attatcgccg tttaaacgcc caaacggtcc      2640
     ccgacagatt tcccattcct tacatgcttg actattcgct tcgtctgtct ggaaaaagta      2700
     tcttctctaa gttagactta tttaaagctt attatcaaat accagttgca ccaacggacg      2760
     tgattaagac agctgttacc actccgttcg gactgtacga atatgttttc atgccttttg      2820
     ggctccgtaa tgcatctcag tcctttcaga gatacatttt ccaggcttta ggcgatctcg      2880
     acttcgcttt tgtttacctt gatgacgtgc tcatcttctc ttcttccatc aaagaacatg      2940
     aagagcacct tcgcacaatc tttgcaagat taaaacagtt cggcctcaga ctgaatgttc      3000
     ctaaatgtga gtttggtaaa actgagctta ttttccttgg tcatctggtc tcttccaagg      3060
     gttctcagcc ctgctcagag aaggtagagg ccatcctcga ctttcctttg ccggtcacag      3120
     ttgcagatct tcgcagattc ctagggctgg tcaattttta tcgtcgttgg cttcctcagg      3180
     cagcctccgc acaggcccct ctttttgatt acacggctga ttcaaagaaa aacgatcaga      3240
     gagtcattga ctggtctcca gaagccaagc aagcctttga aaccaccaag agtcacttgg      3300
     ctaaggctac cctcctggtc catccatctc ctgacgcaga aacacgtctc gttacagacg      3360
     cttctgattt tgccataggt gctacccttg agcaactctt tgagggagac tggaagcccc      3420
     tggcattttt ttccagaaaa tttagccaag ctcaacgaaa ctacagtgcg tacgatcgtg      3480
     agctcacggg gatttatgaa gctattaaat attttaagca cttcttagag ggtcgtaatt      3540
     tcaaggtcgt ctctgaccac aagcccctaa tctacgcgtt tattcaaaag tctgacaagg      3600
     cctctcctcg ccagcggaga cagctctgct ttatttcaca gtttactact gccattgaat      3660
     acttgccagg tttgtcaaat gtggtggctg atgcactctc tagagtagaa gtcattcgtc      3720
     ttcctcttga gttagagctc ccggaattgg ccaaggagca acaacaggac tctgagctct      3780
     cagagctgct gaaatctcct gcccattctc tcaatctaaa acccattgaa ttgggtcaca      3840
     gccacactag tctttattgc gatctcaccg gtaagataat tcgtcctttt attcctaaat      3900
     ctcttcgtaa aagaatcttt gatttaactc actccgcatc tcacccgggt actaaagtta      3960
     ctgatcagct catcagacaa aagtacgtgt ggccgaatat gcatagagac attgccactt      4020
     ggtgtaaagg ttgtctcgat tgccagcaat caaaaatctc cagacatgtc aaaaacgagc      4080
     ctttacaatt catcgctcca gatgatcggt ttcgccatgt ccacatggac ttggttggcc      4140
     ctcttaacac ttcccaaggc tactcttaca ttctcacaat gattgacaga ttctctaggt      4200
     gggtggaggc tgtgcctctc aaagacatat ccactgcgtc agttcttcga gcgtttcagg      4260
     aatcctgggt tgctcgcttt ggggcaccca gatttttgac caccgaccag ggatcacagt      4320
     tcgaatcaca gctctttcaa gcctatcttt cttttctcgg ttgtcagaga ataagaacgg      4380
     tggcctatca tcctgctgct aatggcatga ttgagcggtg gcatcgcagc tttaaggtgg      4440
     ccgtgatgtg tcacaataat gcagattggg tcaaactttt gcctacagtg cttcttggtc      4500
     tgcgtacagc agtaagaagt gacacaggtg cttcccctgc ggattttctc tatggtacaa      4560
     acattagggt acctggtgaa ttttttcttc ccagtgattt cactgctgat cctcagatct      4620
     tcatcgagga ctacagagag catatgaaaa aactcagacc tgtacccgtc acacacagat      4680
     ataaacctcg cgctttcttt tttaaagatt tatacacctg ttcacatgtt tttctgcgaa      4740
     cagccgctgt caggaaacct ctggaaaggc cttacactgg tccttacaag gttttggaga      4800
     ggatctcaga tcaagattac aaaattgatt ataggggcac ccctcgggtt gtgtcgaccg      4860
     agcttttaaa gccagcacat tttgtccctg atgacttggt tactccggcg cttactaaga      4920
     gccctcagaa ggttcaagtt tcgactcctc ctatccctat ccttaaaacc tatagtaata      4980
     agaaaaaagt gaccttcgac acttctgtta agtagattaa gcgcaaagtt ttgtaattag      5040
     tcttaagcct cttttataca cctttgtacg tgtcatacgg tatttaattc agtacgtata      5100
     cattttttct cgcgcgtatc cattcttggc tgtaaatacc gtttaaaaat ttttttttgt      5160
     tttgtttgat taaatagata gttaaaataa gactataaat ctagtcttcc gacaatcggt      5220
     ataattacag tcgtgataat aatgtctagt gaaagattgt atttttttat tttgtattga      5280
     aatacgcaaa catttttgta agactaaaat tctagtctat cgaccaccag tcgactctaa      5340
     ttataattgc gtaacctttt gtgtatgata gcattattgc ttctattgat tttgtactag      5400
     gaggggagta                                                             5410
//
ID   Gypsy-11_CoFl-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-282
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2305-2305 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 282 BP; 52 A; 84 C; 61 G; 85 T; 0 other;
     tgtagggact cagagctctg cagtaccgac tccgtcctcc gcgcttgctt gcgattgcag        60
     cgcttcttca ttgtagcggt ctacccgctc actatgtttt ccttcttctt tgtacgactg       120
     cgagtcaggg cagtcgcctc acgagtcact cagtcaataa attcactatt gttgcagtta       180
     cgaattggct ccttgatttc tccttctcga ctgaactcct gggcttatgg gagcccgtcc       240
     tgatcccaga gtctacctcg gcattacgga cataatccca ta                          282
//
ID   Gypsy-11_CQ-I repbase;    DNA;    INV; 5172 BP.
XX
AC   AAWU01009286;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_CQ_;
KW   Gypsy-11_CQ-LTR; Gypsy-11_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5172
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 401-401 (2011).
XX
DR   GenBank; AAWU01009286; Positions    7353    2182.
XX
CC   Positions [4144-4614] - Integrase core
CC   'GTCCG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1002..2891
FT                 /product="Gypsy-11_CQ-I_2p"
FT                 /translation="MDESRPLPAFRCEQIEGGRLAKEWQEWKGSLQCYFDS
FT                 YEITDQKLMRAKMLHLGGPQLQKVFRSLDGTEDFPEELVEKPWYDAAIEKL
FT                 DAYFKPRRQDVLERHKLRNMKQAPSERFAHFVLRLRQQMQDCGFEKYRPKV
FT                 RRIIEEMLMIDVIVEGCASQDLRRKILAKDQTLAEIEAMGESIESVLMQEK
FT                 ELGKGNDSGRSAYSEVCKITKDKGSRRQAHFENRSKDEEHCPWTCFACGRR
FT                 GHKAMDKECPANGRNCNKCNAIGHFGLRCPKSKRSFKQEIPEQPSKKIRSV
FT                 EASDNRSEEMDIKKVYYTFYGGNTTNVVEVNIGGVSTEMLVDSGSDANLIT
FT                 SKTWQKLKFRQVELLSCRKGGNKILRSYASEVPLVILGTFQAVVMVGELST
FT                 EAEFFVVENGQRDLIGDFTSKRLGILKVGLDVQSVQGGSTETMPFSSIKGA
FT                 KVHIQMDPDVKPVFQPLRRIPIALEDAVNKKLDDLLRRDIIEVKTGPATWV
FT                 SPLVVANKANGEIRLCVDLRRVNQAVVRERHPMPVVEDVVAKIGRGRIWSV
FT                 LDIKDAFFLLKLDEESRDIVTFITHRGLYRFTRLTFGLVSAPEVFQRHMDE
FT                 MLADCEGAYWYLDDVGIVGDTVEEHDARLNKV"
FT   CDS           3172..5124
FT                 /product="Gypsy-11_CQ-I_1p"
FT                 /translation="MGKFVHDLATIDEPLRKLTQKGTKFEWGDQAEAAFVE
FT                 IKGRIANAQCLGFYRVEHVTSVIADASQYALGAVLVQTDSQQQSRIICFAS
FT                 KSLTDTERRYCQTEREALALVWSVERFQIYLIGREFNLLTDCKALTFLFKP
FT                 TSRPCARIERWVLRLQAFQYKTVFISGKDNIADALSRLSITVPVPFDLSEE
FT                 LTIQEVSGGAASMIAVKWEEIKTASGADLEIQEVFQALESGCTDEMSLPYK
FT                 VIAPELCRVDGVLLRGDRIVIPDRLRERVIQLGHEGHPGARVMKEHLRSTV
FT                 WWPKIDRQVEDFVKACRGCTLVSAPNPPEPMIRKELPVGPWQQIAIDFMGP
FT                 LPDGENLLVCVDYYSRYVEVVEMTDISTASTIKELLTVFSRYGVPESIRAD
FT                 NGPQLSSAEFKEFCLEYGVALVSTIPYWPQMNGEVERQNRSMGKRLQIAHD
FT                 LGLDWRVELRKYVLTYHSTKHSTTGHSPAELMFNRKLRTKLPCIPTTTADD
FT                 GEVRDRDRIEKEKGRMYADRKRNATFSDITVGDTVVAKRMRRQNKVESEFA
FT                 PEEFQVVRKKGSDVTIKSSVDGKQYRRCSTHLKRVRRAGSDETPFEDGPVM
FT                 ESVVDSPEPEFAGDANIGELEENGDLNETVEEGPSNSKRKRCEPNRFKDYI
FT                 PY"
XX
SQ   Sequence 5172 BP; 1373 A; 1026 C; 1538 G; 1235 T; 0 other;
     aatggcgacg cggtgaagga aaaaaaaaag aaaaatttat cggcctttgg atttttagta        60
     gcgcggaaat tgttgtaaag tggttttctc gagttaattg gtgattgtac gcggaattat       120
     tgtaacaaaa tgcaggtaaa ataatgcagc ggcgatgagc tcagctaaaa gaacgaaaaa       180
     acaaaatggc ggatgccaaa caaagcgtgc aaagaaaagt gaaaaaaaaa taaatgtcgg       240
     gggggtttta tttgaacgcg gcggggcggc gagtgatttc tttttccaaa agaaaaaaat       300
     gcgtcgggta aatgaaaatt acccattcat ggtgttccgg ccgagttcgg gcagaattcg       360
     gacggaaata atttccaaca aaattcttgc tgagatgttc ggtttatata tgaggatgct       420
     gacagcagtt tgtcagatct ttatttattt gttttgtgat aagaattaga tgcggatctg       480
     ttaaaaaaaa agtgatcggc cgtcgttgag acgcgcaaga gatcgacgcc cgctggggtc       540
     ggtatgtgtt cggccgtcgt tgagacgcgc aagagatcga cgcccgctgg ggtcggtatg       600
     tgttcggccg tcgttgagac gagcaagaga tcgacgcccg ctggggtcgg tatgtgttcg       660
     gccgtcgttg agacgagcaa gagatcgacg cccgctgggg tcggtatgtg ttcggccgtc       720
     gttgagacga gcaagagatc gacgcccgct ggggtcggta tgtgttcggc cgtcgttgag       780
     acgagcaaga gatcgacgcc cgctggggtc ggtatgtgtt cggccgtcgt tgagacgagc       840
     aagagatcga cgcccgctgg ggtcggtatg tgttcggccg tcgttgagac gtgcaagaga       900
     tcgatgcctg cgtggatcga tatgtgttag cggggtctga atatatgaaa aaaaagaaga       960
     tgatttgatg atttttttta tcactttctg tttggttgta gatggacgaa tctcgaccgt      1020
     tgcccgcgtt caggtgcgaa cagatcgaag gcggcaggtt ggccaaagag tggcaggaat      1080
     ggaaagggtc tctccagtgc tattttgact cctatgagat cacggatcag aagttgatga      1140
     gagcaaagat gctgcatttg ggaggaccgc agctgcaaaa ggtttttcgc agcctggacg      1200
     gaacggaaga cttcccggag gaactcgttg aaaaaccttg gtacgacgct gccatcgaaa      1260
     aacttgatgc ctatttcaag ccacgccgac aggatgtcct cgagaggcac aagttgcgta      1320
     atatgaaaca agctccgagc gaacggtttg cccacttcgt tctccgtttg aggcagcaga      1380
     tgcaggattg cggatttgag aaatatcgtc ccaaggtccg gcggatcatc gaggaaatgt      1440
     tgatgatcga tgtaatcgtg gaagggtgtg cgtcacagga cctgcgccgg aaaattctgg      1500
     cgaaagatca aacattggcg gaaattgaag cgatgggaga gtcgatcgag agcgttctca      1560
     tgcaggagaa ggagcttggc aagggaaatg actcagggcg cagtgcgtac agcgaggtgt      1620
     gcaagatcac caaggacaag ggatcaagaa ggcaagctca cttcgagaat cggtcgaagg      1680
     atgaggagca ttgcccgtgg acctgttttg cttgcggacg ccggggtcac aaggcgatgg      1740
     acaaggagtg tccagcaaat ggccggaatt gcaacaagtg taacgccatt ggccattttg      1800
     ggttgaggtg ccccaagtcg aagcggagtt ttaagcaaga gattcccgaa caaccctcga      1860
     agaagatccg atctgtggaa gcaagcgata atcggtcaga ggagatggac atcaagaagg      1920
     tgtactacac tttctatggc ggaaacacga caaatgtggt ggaagtgaac atcggcggtg      1980
     tttcaacgga aatgttggtc gattcaggct cagatgccaa tttgattacc tcgaaaacat      2040
     ggcaaaagtt gaagttcaga caggtggaac ttttgagctg cagaaagggc gggaacaaaa      2100
     ttcttcgatc gtacgcaagc gaagttccgc ttgttattct gggcaccttc caggcggtgg      2160
     ttatggttgg tgagctttcc actgaggcgg agttcttcgt cgtagaaaat ggtcagcgtg      2220
     atctgatcgg tgattttacg tctaaacgtc tgggcatact taaggtggga ctcgatgtgc      2280
     agagtgtcca gggcggctcg acagagacga tgcctttctc tagtatcaag ggtgcaaagg      2340
     ttcacatcca aatggatccg gatgttaagc cggtgtttca gcctctgagg cgaattccaa      2400
     ttgcactcga ggacgctgtc aacaagaagc tggacgatct gctcagacgg gacatcattg      2460
     aggtgaagac gggtccggca acctgggtat ccccattagt cgtagcgaac aaagcaaacg      2520
     gagagatccg tttgtgcgtt gatcttcgac gggtgaacca agctgtggtt cgggagcgcc      2580
     atcccatgcc ggtagttgag gacgtcgtcg caaagatcgg gagaggaaga atttggagtg      2640
     tgctcgatat taaggatgcg ttttttctgt tgaagctgga tgaggagtcg cgagacatcg      2700
     tcacgttcat aacgcatcgc gggttgtatc gcttcacgcg gctcactttt gggctggtgt      2760
     cggcgccgga agtgtttcag cggcacatgg acgaaatgct tgctgattgt gagggtgctt      2820
     actggtactt ggacgatgtc ggtatcgtag gagatactgt tgaagagcac gacgctcggt      2880
     tgaacaaggt ataattcaat tgtgatcaat tggtggttag aaataaatcg gtcttcaaaa      2940
     tctctgtttt ttttatttac atttttgtag gtgctcaaac ggtttgaaga taatggcgtt      3000
     gtattgaatt ggacgaaatg taaagtacgc gttaccgaat ttgacttctt gggatacagg      3060
     ttcagcccgc acggcattcg accctcgttg gcaaagcagg aagcggtgct gtcttttcga      3120
     aggccggaaa acgaaagcga agtgagaagt tttctgggtc ttgctaacta catgggcaaa      3180
     ttcgtgcacg atcttgccac tatcgacgaa ccgctgcgaa aattgacgca aaagggaaca      3240
     aaatttgaat ggggagacca agcggaagca gccttcgttg aaattaaggg tagaatcgca      3300
     aacgcgcagt gtcttgggtt ttatcgagta gaacacgtaa caagtgtcat tgctgatgct      3360
     agccagtatg cgttgggggc cgttctcgtt caaacagatt cccagcagca gtcgcggata      3420
     atctgttttg cctccaagtc gctcacggac acggaacgtc gatactgcca gacagaacga      3480
     gaggccttgg cgctagtttg gagcgttgaa cgtttccaga tatacctcat cggaagagag      3540
     ttcaacctgt tgacggactg caaggctttg acattcttgt tcaaacccac atcacgacca      3600
     tgtgcacgca tcgaaaggtg ggttcttcgc ctgcaagcgt tccagtacaa gactgtgttt      3660
     atttccggga aggacaacat tgcagacgct ctctcaaggt tatcaatcac agttccagta      3720
     ccatttgatc tctcggagga gttgacaatt caggaggtta gtggtggggc tgcttcgatg      3780
     atcgctgtga agtgggagga aattaaaacc gctagtggtg ctgatcttga aatacaagag      3840
     gtttttcaag cactggagtc gggttgcact gacgagatgt cgctgccgta caaagtgatt      3900
     gcacccgagc tgtgccgagt tgacggagta ttgttgagag gtgaccggat tgtaatacct      3960
     gacaggctgc gcgaacgcgt tattcaactg ggacatgaag ggcaccctgg agcacgcgta      4020
     atgaaagagc atttacggtc gacggtttgg tggcccaaga ttgatcgaca agttgaggat      4080
     tttgttaaag cttgtcgagg atgcacatta gtctcagcgc ctaacccgcc cgaaccaatg      4140
     atccgaaagg agctacccgt cggaccgtgg cagcaaattg ccattgattt tatgggcccg      4200
     cttccggatg gcgaaaatct gttggtttgc gtcgattatt atagtagata cgtagaggta      4260
     gtagagatga cggatatttc gacagcgtcc accatcaagg aactgctaac agtattctcg      4320
     cggtatggtg tacccgaatc tattcgagca gacaacggcc cacaactttc atcagcggag      4380
     tttaaagagt tctgcctgga atatggtgtg gcattagtga gcacaatacc gtactggccg      4440
     cagatgaatg gcgaggtcga gaggcaaaat cggtcaatgg gaaaacgtct acagattgct      4500
     cacgaccttg gtctggattg gcgtgttgaa ctacgaaagt atgtgttgac gtaccactct      4560
     acaaagcact caaccaccgg tcactctccg gcggagctga tgttcaaccg gaagttgcga      4620
     acaaagttgc cgtgtattcc tactacaact gctgacgatg gagaggtgcg cgatcgtgac      4680
     cgaatcgaga aggaaaaggg aagaatgtat gctgacagga agcgaaatgc gacgtttagt      4740
     gacatcacgg tgggtgacac ggtagtggcg aagcgtatga gaaggcagaa caaggtggag      4800
     tcggaatttg cgccggaaga attccaagtg gttcggaaga agggaagtga cgtgactatt      4860
     aagtcatcgg tcgatgggaa gcagtacagg agatgctcta cacacctcaa aagggttcga      4920
     cgtgcgggaa gtgatgaaac accattcgaa gatggtcctg taatggaatc tgttgtggat      4980
     agtccggaac cggagttcgc cggggatgcg aacattggcg agcttgaaga aaacggtgat      5040
     ttgaatgaga cggttgaaga gggtccgtcg aactcaaaga gaaagcgatg tgaaccgaac      5100
     cgcttcaaag attacattcc atattgatga tgtttttcag attcgtatta tttgaataaa      5160
     gttaaggagg ga                                                          5172
//
ID   Gypsy-11_CQ-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   AAWU01009286;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_CQ_;
KW   Gypsy-11_CQ-I; Gypsy-11_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-169
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 402-402 (2011).
XX
DR   GenBank; AAWU01009286; Positions    2181    2013.
XX
SQ   Sequence 169 BP; 40 A; 38 C; 45 G; 46 T; 0 other;
     tgtagggtcc tgagttatgt tttaaccttt tgtatacatt cttgaaacca cacctgcgat        60
     gataagtctt gcgcgttgtg acgtcatgat gatttgacag ctcgcttggg ctgctcagtc       120
     attacggagc tgacgacgcg aacagtggac gccgagcaag gacgcaaca                   169
//
ID   Gypsy-11_DAn-I repbase;    DNA;    INV; 4171 BP.
XX
AC   AAPP01017056;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DAn_;
KW   Gypsy-11_DAn-LTR; Gypsy-11_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4171
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017056; Positions   57502   61672.
XX
CC   Positions [1713-2255] - Reverse transcriptase
CC   Positions [3273-3749] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..4154
FT                 /product="Gypsy-11_DAn-I_1p"
FT                 /translation="MNEKKPGTDDEEKTTVRRGKAKLLQAAAKEKADTQKE
FT                 EKPNVKPLVVQARELYSLRSRMIMSETKESEKVAKAMEKKVERKENTGVQG
FT                 DMNLVTQNNEMLQQLVQLLTLKIRADEVQKDEGKLIVENFAKIIPEFDGSN
FT                 MQVKAWFQNFELNADAYGLSEKQKYVQARAKMTHTAALFLESAIVYEYDTL
FT                 REVLIDEFSRVKVGSAEINKQLMARVKLKNESFHEYLLQMKRIAARGVIDT
FT                 ESVIKYVVDGLNLKSDFKFTLYGCASFKELREKYEVYESNHIYEKDEKRQI
FT                 QPNRSKYGAQANAGKKQHCFNCGAQDHIRKDCKSEVKCFRCNESGHMAKNC
FT                 GTAPKIKLAYEERRLKKLCIGDIWVEALVDTGADVSIIKEAVVKKMSGVSL
FT                 QQSVSTLRGLGNGVTRPLGQFNAEAKIDEMKLTHRFLVVPENAMVCDALLG
FT                 YDFVAKFRVKMTAAGFEFSPPAGEETVESNQLSILNVIETNTDIETPPQFK
FT                 EAVETMVSEFNMMEKTAECPIELKIVPDNNIVPFRQAPSCIAANEAEAVKH
FT                 QVKEWLDTGVIRQSTSNFASRIVVVKKKDGSNRICVDYRQLNKMVLKDCFP
FT                 VPVIDDVLEKLQRAKFFTVMDLENGFFHVPVEEKSRKYTAFITKEGLFEFN
FT                 KAPFGFRNSPAVFIRFVNHVFQKLMNDDVLDLYMDDIIIHAVTADECLRKM
FT                 ESVFKKSAEYGLKIKWKKCHFLQTKIHFLGHVIEEGKIKPGTEKTKAVEKF
FT                 PVPQNIKALQSFLGLTGFFRKFIRGYSQIAKPLTNLLRKNELFRMEYAELK
FT                 SLKELKDALISKPVLRIYNRDARTELHTDASKDGFGATLLQWYDEQLYPVC
FT                 YWSKKTTPAESKKHSYILEAKAVYLAFKKFRQYLLRISFKLIIDCAAFKQT
FT                 LKKRDVPRDVAEWVVYMEQFDFEVEHRPGTRLKHVDCLSRYPHQIMVVSAE
FT                 VSARLQKAQHDDAMIKAILEILSSRPYENFKIKGGLLYRSVEGTDVLVVPK
FT                 IMEKEVITEAHKVGHFGTQKTMHSIQQNYWIPHLEGKVAKVINNCIKCIIY
FT                 NKKLGKKEGFLHSIDKGVEPLHTVHVDHLGIMDATAKQYKHIFAIVDGFTK
FT                 FVWLYPTKTTSSEEVLQKLNNWSDVFGNPSRIISDRGSAFTSAAFEAYVKE
FT                 NGIEHVWSTTAVPRGNGQVERVNRSILAIISKLSADKPDKWFHFVPKVQRV
FT                 INGTIHKSTKRSPFELMFGIKMRNDANGNMLQMLEEEMYNSFDEERQKTRQ
FT                 EAKVEIQQAQEDYKKAFDRKRKNNYGYKMGDLVAIRRTQFVAGRKLASEYL
FT                 GPYEITKVKRSGRYEVRKVGDSEGPRNTATSNDNMKLWRYAEDNDEAWSSE
FT                 ADD"
XX
SQ   Sequence 4171 BP; 1390 A; 784 C; 1029 G; 968 T; 0 other;
     aaaacaacgg aaaaaagagt gcataagtaa atttggcgcc tgagtaattc ttgcatatga        60
     acgaaaaaaa accaggaacc gacgacgaag aaaaaacgac agtgagaaga ggaaaggcaa       120
     aattactgca agcagccgca aaagaaaaag cagacacaca aaaagaagag aagccaaacg       180
     taaagccgtt agttgtgcaa gcgagagaat tatactcgct gcgatcacgc atgataatgt       240
     cagagacaaa agaatctgaa aaagttgcaa aagcgatgga aaaaaaagtt gaaagaaagg       300
     agaacacggg tgttcaaggt gacatgaatt tagttacaca aaataatgaa atgctccagc       360
     agttagtaca gttgttaact ttaaaaattc gggcagacga agttcagaaa gatgagggaa       420
     agctgattgt ggaaaacttc gcaaaaatta tacccgaatt cgacggtagt aatatgcaag       480
     tgaaggcgtg gtttcaaaat tttgagttga atgccgacgc atatgggctc agtgaaaaac       540
     aaaaatatgt gcaagctcgt gccaagatga cccatacagc cgcactattt ttggagtcgg       600
     caattgtgta tgagtacgat acattgcggg aagtgttaat tgatgaattt tctagagtaa       660
     aagtaggcag cgccgaaata aacaagcaat tgatggcgcg tgtgaagctt aaaaacgaaa       720
     gttttcatga gtaccttctg caaatgaaac gcattgctgc gcgtggagtc atagacacag       780
     aatcagtaat aaaatatgtg gtagatggtc tgaatctcaa aagtgacttt aaatttacgc       840
     tttacggctg tgcatcattt aaagaactga gagaaaagta cgaagtgtat gaaagtaatc       900
     atatctatga gaaagatgag aaacgacaaa ttcagccgaa tagaagtaaa tacggcgcac       960
     aggcaaatgc tgggaaaaag cagcattgtt ttaattgtgg tgcccaagat cacattcgaa      1020
     aagactgcaa aagtgaggtt aagtgttttc gctgcaacga aagcggacac atggcgaaaa      1080
     actgtggtac agcaccaaaa ataaaacttg cctatgagga acgtcgactt aaaaagttgt      1140
     gcatcggtga catctgggtg gaagctctag tggatactgg agctgacgtc tcaatcatta      1200
     aagaagccgt ggtcaagaaa atgagtggtg ttagtctgca gcagagtgtc tctaccctac      1260
     gaggtcttgg aaatggcgtg acgcgcccgc ttggtcaatt caatgcagag gccaaaatcg      1320
     acgaaatgaa gcttacacac aggttcctgg tcgtgccgga aaatgccatg gtctgtgatg      1380
     ccttactagg atacgacttt gtggcaaaat ttagggtaaa gatgacagca gccggcttcg      1440
     agttttctcc ccctgctggg gaggaaactg tggaatcgaa tcagctaagt attctaaatg      1500
     ttattgagac caacactgat atagaaactc ctccgcagtt taaagaagca gttgaaacca      1560
     tggtgagcga gttcaatatg atggaaaaaa cagccgaatg cccgatcgag ctcaagatcg      1620
     tgccggataa taacattgtg ccttttcggc aggcaccaag ttgtatcgcc gccaacgagg      1680
     cagaagcggt aaaacatcaa gtcaaggagt ggcttgatac aggcgtaatt cggcagtcaa      1740
     cgtctaattt tgccagccgc atagtggttg tcaaaaagaa ggatggaagc aaccgcattt      1800
     gtgtcgacta ccggcagctc aacaaaatgg tacttaaaga ttgcttcccg gtacctgtta      1860
     ttgacgacgt gctggaaaag ctgcagaggg ccaagttctt cacagttatg gatttggaaa      1920
     acgggttttt ccatgtgccg gtcgaagaaa agagcagaaa gtacaccgct ttcattacaa      1980
     aggagggcct ttttgaattc aacaaagcac catttgggtt tcgcaattct ccagcagttt      2040
     ttattcgttt tgtcaaccat gtgttccaaa agctaatgaa cgatgatgtt ttggatctgt      2100
     atatggatga tataatcata catgcagtaa cagcggacga atgtctgagg aaaatggaga      2160
     gcgtgttcaa gaagtcagca gagtatggcc taaagataaa atggaagaag tgccattttc      2220
     tccagacgaa aatccatttt ctaggccatg taattgaaga aggcaaaatc aagccgggaa      2280
     cagaaaaaac aaaagcagtc gaaaaatttc cagtgccgca gaatattaaa gctctgcagt      2340
     cttttctggg tctcacgggg ttttttcgca agttcattcg aggatattcc cagatcgcaa      2400
     agccgctgac aaaccttttg cgcaaaaatg agttgttccg aatggagtat gccgagttaa      2460
     aatcgctgaa agaattgaag gatgcactta tctcgaagcc tgttctaaga atttataata      2520
     gagatgccag aacagagctc cacacagatg cctcgaagga tgggtttggt gccacattgc      2580
     tgcagtggta cgacgagcag ttgtatccag tctgctactg gagtaagaaa actacaccgg      2640
     ccgaatcgaa gaagcacagt tatatactgg aggcaaaagc agtgtatttg gcttttaaaa      2700
     agtttcgcca atacctactt cgcatttcat tcaaactgat tatcgactgt gccgcgttca      2760
     agcaaaccct taagaagcga gatgttccgc gtgacgtggc agaatgggtt gtatacatgg      2820
     agcagtttga cttcgaagtg gaacataggc ctggcacccg attgaagcac gttgattgtt      2880
     taagccgcta cccacatcag ataatggtag tctctgcaga agtttctgcc agactgcaga      2940
     aagcgcagca cgatgatgcc atgatcaaag cgattttaga aattttatcc agccgacctt      3000
     atgaaaattt taaaatcaaa ggaggcctat tgtacagatc agtcgaaggc actgatgtgc      3060
     ttgtagtccc aaagattatg gaaaaggagg tcatcacaga agcacacaaa gttggccatt      3120
     ttggtactca gaaaacaatg cattctatcc aacaaaacta ttggattcca catttggaag      3180
     gaaaggtggc taaggtcatc aataactgta tcaaatgcat catctacaac aaaaaattgg      3240
     gcaaaaaaga gggatttctt cacagtatcg acaaaggagt agaaccgtta cacaccgtac      3300
     acgtagacca cttggggata atggatgcca cagccaagca atataaacac atatttgcga      3360
     ttgtggatgg cttcacaaag tttgtctggc tgtatccaac taaaaccacc agcagtgaag      3420
     aggttttgca aaagctaaac aactggtcag atgttttcgg taatcctagt cgaatcatca      3480
     gtgatcgtgg atcggcattt acgtcagctg cttttgaggc gtatgttaag gaaaacggga      3540
     tcgagcatgt atggagcacc acagcagtcc caagaggaaa cggtcaagtc gaacgcgtga      3600
     atcgttccat tttggccata atctcaaagc tgtcagcgga taagcccgac aagtggtttc      3660
     attttgtgcc aaaggtacag agagtcatca acggcacaat acacaagtct acgaagcgct      3720
     cgccattcga acttatgttt ggcattaaga tgaggaatga tgctaatggt aatatgctgc      3780
     aaatgctaga ggaggaaatg tacaacagtt tcgacgaaga gagacagaaa accaggcagg      3840
     aggctaaggt ggaaattcag caggcacaag aggactataa aaaagcgttt gatagaaaaa      3900
     gaaagaacaa ttatggctac aagatgggtg atctagttgc tattcgccgt acgcagttcg      3960
     tggctggtag aaaactagct agcgaatacc ttggtccata tgaaatcacg aaggtgaaac      4020
     gcagcgggcg ttatgaggtc cgtaaagttg gcgactcaga agggcctagg aacaccgcta      4080
     caagcaacga caatatgaag ctgtggcgtt atgcggagga caacgatgag gcttggtcat      4140
     cagaggccga tgactaatca ggagggccga a                                     4171
//
ID   Gypsy-11_DAn-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   AAPP01017056;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DAn_;
KW   Gypsy-11_DAn-LTR; Gypsy-11_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-303
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017056; Positions   57199   57501.
XX
SQ   Sequence 303 BP; 68 A; 72 C; 81 G; 82 T; 0 other;
     tgtaagatgg gagatgaggc gagagcgagt atgaagtgtg aatcggagtc agcagtgaag        60
     agttggaacc agcagttggt gtgagttgca gtcgtccagc cgcagtcgtc cagttgcagt       120
     cgtccagtcg cagtcgtcca gttgcagtcg tccagccgca gtcgtccagt tgcagtcgtc       180
     cagccgcagt cgtccagttg cagtcgtcca gccgcagtct tactatacta tatcctatta       240
     tcctattcta ctattctata ttctaataaa tggcaatttg ccttatattt gggggctcaa       300
     cca                                                                     303
//
ID   Gypsy-11_DAzt-I repbase;    DNA;    INV; 5018 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5018
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 792-792 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..4907
FT                 /product="Gypsy-11_DAzt-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MSDSVGAQDFSAAQLRGWLEALNMPKGGSKAAMAARL
FT                 NDLPADVRGQGPPEMVTGESETEDDAAPAQSETNNGGEGEAENASLAYADN
FT                 GKKPNDEHKEENGKSQPTLECNNNNYKGETPPEKDCGEKTHAEVELLKLQI
FT                 ELLKLQKEKGENTGSDASIMLLNAAKEMLPTYHGNISGCNENVAAWITQFE
FT                 AAARVYKLKDEKLLMLLMSKLKDNALVWLHSNPEHISLPIGQLLSIMEDTF
FT                 QPKESKLLLRRKFESRAWMRDEEFSKYFNDKMALASRITIDNEELIDGVIE
FT                 GIPDEGLRRQAHMQCFGAPYQVLRAFEKVMLPKRHNPKGAANTGGAAATIR
FT                 CYNCNSLGHMAGECRKPKRERGACYGCGSMSHQVSHCDERKNKVHNEYIYR
FT                 FEIYVSNYSNKCLSLDCLIDSGSPISFIKSSCLGYQPHEAKGRIVLRSNDF
FT                 QRDNLSCYKLSEDDNFEFILSKDANYSYVGLNNSKLNIFGKIPCFIIINSK
FT                 QFNFELLVVADESMGYEAVLGRDFMNLCKFKIVSDICTKEEHKEEENECID
FT                 KDGREAENECIDKDEREEENECIDKEEREAENECIDKDEREAENECIDRDK
FT                 HETENERIGTNESEKKDERIKDRKHKAEKKGKKENECVIEKGHTEESKYGV
FT                 ETECLEEQEDKVGNAAVVGLVQVKDAYENIKANFSELPGEYPAVRNDSELK
FT                 VGPDCCVNLVERLKHMFRETYANAESPGLPETRWEMKLNFENEKPFNCPPR
FT                 RLSYSEKSQVQKMIDDYTEKGYIRTSESEYVSPIVLVKKDSGELRLCVDYR
FT                 TLNKWMIKDNYPTPLIDDLLDKLSEKRLFTKLDLKNGYFHVFMHKDSVKYT
FT                 SFTTPMGQYEWLRMPFGLRNASAVFQRFTNKIFADLVKEDKVIIYMDDIMI
FT                 ATKDSESHMEILQEVLRRLVANKLELRLDKCEFLQSEVKYLGYSISGSGIK
FT                 PDTKGLRAVKEFPIPTKTNEVQSFLGLCSYFRRFVKDFSTKAKPLYDLVKK
FT                 DKKFEFGAAELECFEQLKTKLLEAPILALYNPKDPTEIHCDASALGFGAIL
FT                 MQKKKDDKIHPVFYFSKRTTITEAKYHSFELETLAIIYALKRFRVYVQGIP
FT                 FKIVTDCSALTLTLNRKELNPRIARWALELQNYDYKLEHRSGKRMQHVDAL
FT                 SRITQILTIDTNTFEENLIICQNRDNKLIELRETLQKAEHKHYEMRNGIIY
FT                 RKRDDLTLLFYVPEEMENHVLYKYHDELGHVGIDKMTDAILKSYWFSKVRS
FT                 KAKRHIENCLKCIAFSAKHGKEEGFLHNIPKGSAPFEVVHIDHFGPVDKGR
FT                 ANKHILVVIDAFTKFVRLYTARTTNTKEAVNAMKDYFRAYSRPKCIISDRG
FT                 SCFTSKEFGEFMVQNNVKHVKIATGSPQANGQVERVNRSLGPMIAKLVEPE
FT                 KGLHWDIVIETVEHALNNTIQRSINEHPSRMLFGVQQRGEVSDLLGVYIKE
FT                 VTEQQDTRDLEKIRAEASTHQEKIQAYNRQTTDSKRKEPHAYKENDLVMVK
FT                 NFDTHVGVCKKLIPKFKGPYRISKVLRNDRYVLEDVEGFQQSRIPYKGVWA
FT                 VANMKPWLEKDNDANVTEKQYEDNDCDT"
XX
SQ   Sequence 5018 BP; 1842 A; 949 C; 1235 G; 992 T; 0 other;
     aactcagaag tgggattgag ccaacaccaa caagctataa cgggaaaaaa agccgcattt        60
     tttttttctc tgcgacacac gcatcgacga agccatccaa agcgagaacg acaagaacaa       120
     acatgtctga ctcagtcggc gcacaggatt tctcggcggc ccagctgcgc gggtggctag       180
     aagctctcaa catgccaaaa ggaggaagca aagccgccat ggcagcccga ctgaacgacc       240
     taccagcaga tgtgcgaggg cagggaccgc cggagatggt aacaggagag agcgagacgg       300
     aagatgacgc ggcgccagcc caaagcgaga caaataacgg aggagaagga gaggccgaaa       360
     atgcgtcgct ggcttacgcc gacaatggaa aaaaacccaa cgacgagcac aaagaagaaa       420
     acggtaaatc gcagccaacg cttgagtgca acaacaacaa ctacaaaggc gaaacaccac       480
     cagaaaagga ctgtggagaa aaaactcatg cagaggtgga actgttaaag ctacaaatag       540
     agttgctgaa actgcagaag gagaaggggg agaacacagg cagcgatgcc agcatcatgt       600
     tgctgaacgc ggcgaaagaa atgttgccga cgtaccatgg caacatttcg gggtgtaacg       660
     aaaacgttgc agcttggatc acgcaatttg aggccgccgc aagggtgtac aagctaaagg       720
     atgagaagct actaatgctg cttatgtcga aacttaaaga caacgcacta gtgtggctac       780
     actcgaatcc agagcacatc tcattgccga tcggacaact gctgagcatc atggaagaca       840
     cgttccagcc caaggagagc aagctattgc tccgtcgcaa gttcgagtca cgtgcatgga       900
     tgcgtgacga agagttctcc aaatatttca acgacaagat ggcattggct tcgcgcataa       960
     ccattgacaa cgaggaactg atcgacggcg tcatcgaagg catcccggac gagggcttgc      1020
     gcagacaggc ccacatgcag tgcttcgggg ccccgtatca ggtactcagg gcgttcgaaa      1080
     aggtgatgct gccaaagaga cacaatccaa aaggggcagc gaacacagga ggagcagcag      1140
     caaccatccg ctgctataac tgcaactccc tgggccacat ggcaggggag tgccgcaagc      1200
     ccaagcgcga gagaggagca tgctacggat gtggcagtat gagccaccag gtgtcacact      1260
     gtgacgaaag aaagaacaag gtacataatg aatacatata caggttcgag atatacgtta      1320
     gcaactacag taacaaatgt ttgtccttag attgcctcat cgactcgggg agcccaataa      1380
     gttttattaa gtcatcatgc ctaggatacc aaccacacga agcgaaagga cgcatagttt      1440
     taaggtctaa tgatttccag agggataatt taagttgtta taaactaagc gaagacgata      1500
     attttgaatt cattttaagt aaagatgcga attactcata tgttgggcta aataatagca      1560
     aacttaatat ttttggcaaa ataccctgtt ttataataat caatagcaaa caattcaact      1620
     ttgagttgct agtagtggca gacgagtcga tgggctacga ggctgtatta ggtagggact      1680
     tcatgaattt atgtaagttt aaaattgtaa gtgacatttg cacgaaggag gaacataaag      1740
     aagaagaaaa tgagtgtata gacaaagatg gacgtgaagc agaaaatgag tgtatagaca      1800
     aagatgaacg ggaagaagaa aatgagtgta tagacaaaga agaacgtgaa gcagaaaatg      1860
     agtgtataga caaagatgaa cgtgaagcag aaaatgagtg tatagacaga gataaacatg      1920
     aaacagaaaa tgagcggata ggtacaaatg agagtgaaaa gaaagacgag cgtataaaag      1980
     atagaaaaca taaggcagag aagaagggta aaaaggaaaa cgagtgtgta atagaaaaag      2040
     gtcatacaga agaaagtaag tatggggtag aaactgagtg tttagaagaa caggaagata      2100
     aagttggaaa cgcagctgta gtggggctgg tacaggtcaa agatgcatac gaaaacataa      2160
     aggccaattt tagcgaacta cctggagagt acccggcggt gagaaatgat agcgagttaa      2220
     aggtaggacc agattgttgt gtgaatctgg tggaacggct taaacacatg ttcagagaaa      2280
     cctacgcaaa cgcagaaagt ccaggtctac cggagacgag gtgggaaatg aaattaaatt      2340
     tcgaaaacga gaaaccgttc aattgtccgc ccagaaggct atcgtacagc gaaaagtctc      2400
     aagtacagaa aatgatagac gattacacag aaaaaggtta catcagaact agcgaatcag      2460
     aatacgtgtc acctatagta ctggtgaaaa aggattcggg ggaactaagg ttgtgcgtag      2520
     attatcgcac actaaataag tggatgataa aagacaatta cccgacaccc cttatagacg      2580
     acctgttaga taaactctca gaaaaaaggc tgttcactaa attagatctg aaaaacggat      2640
     acttccacgt tttcatgcac aaagattcag taaaatacac gtcattcaca acacctatgg      2700
     gacaatacga gtggttgagg atgcctttcg ggttacgcaa tgcgtcggcg gtattccaaa      2760
     gattcacgaa caagattttc gcagacttgg taaaggaaga taaggtcata atatatatgg      2820
     acgacataat gatagcaacg aaggatagtg aaagtcacat ggaaatttta caggaagtac      2880
     tgagacgttt agtggcaaac aaactcgagt taaggctaga caaatgcgaa ttcttacaat      2940
     cagaagttaa gtacctagga tattctattt cgggcagcgg aatcaaacca gatacgaagg      3000
     gactacgagc ggtgaaagaa tttccgatcc caactaaaac gaatgaagta caaagtttct      3060
     tggggctatg ttcgtacttt agaaggtttg tcaaagattt ctcgacgaaa gctaaacccc      3120
     tttatgactt agtcaagaaa gacaaaaagt ttgaattcgg agccgcagaa ttggaatgtt      3180
     tcgagcagct aaagaccaaa ttattggaag caccgatctt ggccctgtac aatcccaaag      3240
     acccgacgga aatacattgc gatgcaagcg cactagggtt cggggcaatt ttaatgcaga      3300
     aaaagaagga cgacaaaata cacccagtat tctatttctc taagcggaca acgattacgg      3360
     aagcaaagta tcacagtttt gagctagaaa cactagcgat aatctatgca ctaaaacggt      3420
     ttagagtgta cgtgcaaggc atacctttca agatagtaac agactgcagc gcattaacct      3480
     taacattgaa tagaaaagaa ctgaatccaa gaattgctcg ctgggcgtta gaattacaaa      3540
     actatgacta caagttagaa cacagatcag gaaaaagaat gcaacacgta gatgcgctaa      3600
     gcaggatcac ccagatactc acgatagaca caaatacatt tgaagaaaac ctaataatat      3660
     gccaaaatag agacaacaaa ttgatagagc taagagagac tttacaaaaa gcagaacata      3720
     aacattatga aatgaggaac ggaataatat acaggaagag agatgacctt acgctactat      3780
     tctatgtacc cgaagagatg gaaaaccacg tactctataa gtaccacgac gaattaggac      3840
     acgtaggaat cgacaaaatg acagacgcta ttttaaagag ctactggttc tcgaaggtta      3900
     ggtctaaggc caaacggcac atagaaaact gtcttaaatg catagcgttt tcagcgaaac      3960
     acggaaaaga ggaaggattc ttacacaata taccaaaagg gtcagcgcca ttcgaggtgg      4020
     tacatattga ccacttcggg ccagttgaca aaggcagggc aaacaaacat atcttggtgg      4080
     tcatagacgc attcaccaag ttcgtaagac tttacacggc aagaactacg aacacgaaag      4140
     aagcagtgaa tgcaatgaag gattatttcc gagcttatag cagaccgaaa tgcattatct      4200
     cagacagagg aagctgcttt acgtcgaagg agtttggcga atttatggta caaaataatg      4260
     ttaagcacgt taagatagca acaggatcgc cgcaagcaaa cggacaggta gagagagtga      4320
     acagaagcct aggacccatg atcgcaaaac tggtcgaacc agagaaggga ttacattggg      4380
     acatagtaat agaaacggtg gagcacgcgc tcaacaacac tatccagagg tcgattaatg      4440
     agcacccaag tcgaatgttg ttcggagtcc agcagagagg agaggtatcg gatttactag      4500
     gagtgtacat aaaagaagta acggaacaac aagacacaag ggatttagag aagattagag      4560
     cagaagcgag cacccatcag gagaaaatac aggcctacaa cagacaaaca acagactcaa      4620
     agagaaaaga accgcacgcg tacaaagaga atgatctggt catggtcaaa aattttgaca      4680
     cccacgtagg cgtatgcaaa aaactcatcc ctaaattcaa aggaccgtat agaatatcga      4740
     aagtattaag aaatgataga tacgtattgg aagacgtaga aggattccag cagtcaagga      4800
     tcccctacaa aggagtttgg gcggtagcga atatgaagcc atggctagag aaggataatg      4860
     atgcaaatgt cacagagaaa cagtatgaag ataatgattg tgatacataa accaaaacta      4920
     ggatactaat agtaaactat ccaacagtga taaacgaaac gcaaaagtta ggcttagcca      4980
     taaggagttc aggagcactc cggtcaggat ggccgaat                              5018
//
ID   Gypsy-11_DAzt-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-311
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 815-815 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 311 BP; 105 A; 59 C; 67 G; 80 T; 0 other;
     tgtagcagta tatttagaga tatgagtagt cacataagca accctgtttt ttgaaaatga        60
     tagaccacgc gtcggtatct cccgcaccat cgataaactc gggaggagat accgataggg       120
     agaacgatag agaacgatca tcgttaagag agggactcac tttttgtgct gcatgcgaag       180
     acgacggaag tgtctctaaa aaaccagtaa aataaagcgt aaactatact aaattaaatc       240
     aattgagttt cgagtgtgtt ttatcttcac aacggaatcc tctccattgg acaaaattaa       300
     ggctgcctac a                                                            311
//
ID   Gypsy-11_DBi-I repbase;    DNA;    INV; 4548 BP.
XX
AC   .
XX
DT   27-DEC-2011 (Rel. 17.06, Created)
DT   27-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4548
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 841-841 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. It does not have LTRs but is
CC   certainly similar to Gypsy elements. It is often tandemly
CC   arranged. Thus it may be a satellite family derived from Gypsy
CC   LTR retrotransposons.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4548 BP; 1471 A; 869 C; 950 G; 1257 T; 1 other;
     agttaacaaa aataataaaa caaataataa gtgataacaa tagttaacaa aaataataaa        60
     ataaataata agtgatacta taacacttat aataagcctt ataaaatagg caccatccta       120
     aagtacttat tttcaggtcc acccttatga tacgtacgca ctcctggatg agtgatcatc       180
     cataacggtg atcgacgacg agctacggag agaccttggg gctgaaggtg agcgtcgata       240
     atttaatatt cagtggttag gaggtagagc aaccagaccg cctaccctat cctaggtttc       300
     ccagcaaggc acggcacact gaacgagttg tgcgcggcag ttcctcctgg tccacccgga       360
     acagacggtt tcccagcaag gcacggccca ccgaactcgg attcggccct ccccaggaag       420
     atttagacga cgacggcgcc cacaacaaac gagggccagg agcttggcac cgtgttgccc       480
     cacatggagg aacaggccgt ggaacgaaac gctttccacc gacgacatcg accggataca       540
     tcgacgcagg aagaacaagt tagatttcta aacccattct aaagaggtcc aggccaccgt       600
     agtgccacga aggattctgg aagtagtgtg ggaacagcag atccacgggc gcaagcctat       660
     ctcgagtttg agttgagtag atttgacaac cttagagggg tatccagtat cgcggagcac       720
     cacatcgtca tgcgagacga taaacctata aaacagcggt actacggcgg tgcttctata       780
     gttctgggcg cgggaatgtc gactccaacg cctgttattc tgctgggtgt gcgggagagt       840
     aggtgtcagg agcgtcgaat gctgccagaa ggcgggaaat gcgcaatcat agccgcagag       900
     agataacata ccggagaaca tttttttgag ttgtactaaa gacttgtagt agttctccac       960
     ggggccggtg accatttcag tgtagaaaag ggatcgacca ctgagtggtc ccttaagggt      1020
     caataagtgg cttgtgtatt ttttacaagt gaaaaagagt tataggagag ggaacaaagc      1080
     tatatgaatc aaacaaattc ataaagtgaa atataaattc atgtaaaaca aaagttaaaa      1140
     taaaaaaaat taatattccg ataaaataaa ataataaaag aaagaaatgt attatttttt      1200
     atagtatttt tgtttataat gtgcaattta gctgcggttc agcagcaaaa agttttcttt      1260
     catttcataa caagcggatt tttttagtgc ttaaatattt aaaaaaatat ataagtacct      1320
     aattacatat aaatttaaat aaactaaaat attattagcg aaaggtttta ttgcaatcga      1380
     atattcgata tcgatgggtg caatgttaat agtaacagtt tgccaccact atccaacgct      1440
     cgagatatta ggccatgaac agcagtgccg gctacgtcga ttagttaaat agtgaaaaga      1500
     gagattacaa acaaaattta ggaaattatt agtgtctaat tgttgggcat tcaataccgc      1560
     agattttaat aatcatatag aagttttaga ttttttaatt cagaggagtt aggtgtatga      1620
     actaatgacg aacccccagt tttgcaaaat agtggtatgt taaatgacaa gctttgccaa      1680
     taacacaatt agccgcgaat gcgccataga cttatttaaa atttcgaact aagaaaaatt      1740
     tgcttattcg gtggccaata tttacatgta tgagataaaa attaactttg aagttaatag      1800
     actgctatca gagtgaaaat cagttagtgt tagacattaa taaagaccga ctgtcagctc      1860
     agctctggcc cattttgata agatataata attttgtaaa taaaacagtt atttgtgtag      1920
     gagtttttct gagatacaca aaaccgtaga actgtgatga ttatttaagt ccgttgtttg      1980
     aagaattata taaatgtgaa aattagggca attgtatgcg atgctcctgc cagggctttt      2040
     attagtggaa caccaggtca tacttcccga catggttggt caaaaatctc ggagcgcagc      2100
     ttcgcagctt cacagatgtt tcctttggta tgtacggtcg aatttgttac gtaaagcaca      2160
     tatgttttct atttcagaca atcctcttca acagccgtta gtgtgaacaa gttgttgcga      2220
     agtcaagaga caaattgcgg aagtaagtag tacaatttaa aactttttaa cgttaaattg      2280
     tattttgagc tatattactt tcagacatgt tttttgtgtt aataaaatgt gaaatggctt      2340
     accattattg ttaaataatt gtttcagtga tgtttctttt cttaaattta ttttctcctt      2400
     gcttaatgcc ctaataataa attttttttt aagcttgggg aaataattca tcctgttgtg      2460
     gagcaaataa ttattgtttc gcaactggta gggcagcgag tggaagacac aagcgtgaaa      2520
     gagaattaag ttactgatgc cctttccaga caacagctca atgcagtagg ggatcaagta      2580
     gcaaagtcct gctctgccac aacgcacaga gagcgttcgc taacttcaac tattgaaata      2640
     accgacaagc cgcctaattg cttccagaat caaatcattc tggaagaaac gtgctttttg      2700
     cggaaacttc gtactttttg gaacaaaagg cgatgtataa ttaactttat ctgcaaagag      2760
     acattacttg acgagctcga tgagaaacag tcgtccccaa gggagtaaac ccaacacatt      2820
     gcgacaacga accctcttta aactcgcata caatatcgac catgctgacc gatcactttg      2880
     gtgttggcat ttcaaatgcg ccacccctgc acagttactc gagtggtcaa gtaaatcgct      2940
     taaataccac ttttttacaa atagccagat gtagaaaaac atacagacat cccagactgg      3000
     atcaggagcg cccaggctgc actcagcgcc aggaaaaatg cctctcgcca aaacagggtt      3060
     tttgaagtag gcgacaaagt cctggtaaaa taaaccgaag aatcggtaag aagttccgcc      3120
     gttgggtatg cagataaccg ttgaagcggt gctgagggtg accatgaccc tcattaatgg      3180
     aatggtggta caccaagacc accttaagta acaccattag gctgtacacc ttttatagta      3240
     catagtatta tagttttgtt ttaatagtta tagtttttag ccacttggca ttagttataa      3300
     tgtcaagtta tttgaagtat ttcattctgg tggtgggaag tctcaacata agcacagtct      3360
     aaacagattt taaatttaca ggttcgaact gatagccgca tcctagtatg ggaagagttt      3420
     gctcatgtaa cacacacggc gaaccttttg ggaatacagg caagtcggta tgggtgacaa      3480
     atttctgcag tcttacatga gaaagcttct gagggtatac actgaccacc tttgagacct      3540
     gctggattcg ttggaaaggg cactacagga aagtcagatg tttagacttc ctgggttctg      3600
     ttttaaaagt tgtccagatg cagaaaattt tgagaaaaca aggttcaaag aagctcagct      3660
     aataaattca aacaatagac aaaaataaaa tcaacttact aagaactaaa gtcaatcaga      3720
     ttctaaactt agccaaaatt aaactactcg acttagcctt agctaaaatc aatatcgtca      3780
     gcccaaatat attagatcac tcagatttag agtcattttg gctggaggag cccaccagca      3840
     cccctataag ggatctttcg gccttcttgt ccgtaaaaat atttcagtcc gctaacgttt      3900
     tatamttttt aataaagttt cttaggtcaa aatttgcatg taagaaagct acccagtcgc      3960
     ccaagataat gtgatccttc agttaaagga cgacgtcatc aaaacaggga ttgcgccaca      4020
     tcacccggtg ccacgttatg atggcttgca gcaattagtt catgcgccag tgatctacac      4080
     tgcgaagcca agtaactggc ttccgatcat ccacgtagat gagagtacca ttattattaa      4140
     tgactgttca gcgcacgttt gagttgacaa cggctcagaa gtcctgattt actgaacgta      4200
     cctcataaca ttcagcgagc gtgctgtaat caataaaacc aaatatgtca atcaaaataa      4260
     aaaaaaggtg tggcgggttc accattgctg aatataacca tcagccacga agttttgagt      4320
     ctccattatc ttcaccgctt gaatgaacgt agaacgtagg aggttcatcc ggaaagtttg      4380
     aaaggaagtt aatcacactc taatacaaca gatagtgcta tccattatag tagtattctg      4440
     cgcgttgact tgcatcttgc tcacatgtca gcgggtcatc ttggcaagaa aatcaagctc      4500
     aaggaggccg agggcggcct tcatttttaa gattgcgtag ttaacaat                   4548
//
ID   Gypsy-11_DBp-I repbase;    DNA;    INV; 6655 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DBp-I.
XX
NM   Gypsy-11_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6655
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 672-672 (2012).
XX
RN   [2]
RP   1-6655
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-OCT-2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1645..2799
FT                 /product="Gypsy-11_DBp-I_1p"
FT                 /translation="MLIHDHRERLNQDHWSQVSKLLIRLRSNLIFIKQKFS
FT                 LEISLPTVLNTPIAVDTAPDSESTETKESESEELPKVNPKIEDEDLNNLTI
FT                 PAVYTDLDNSTDSDTSSVIEYKIDKSITMAQSNIDFINTASKLIPVFDGKA
FT                 ENLTSFIDALQIIQSIKGEHEELAISIIKTKLKGVARNLIGNETTITEVIA
FT                 RLRSNVKGETVEVLSAKLMNLQQRNKTANQYTQEIEQMTKALEGAYISDGL
FT                 SLELARNYSMQHAVKAMTKNCTIDKVKLIMQAGTFSTMNEAVSKFVNSCTE
FT                 ATGQSNTVLYYKNYPQRGSNRGRGSYRGSFRGNHNNYNHNNYNNDNYNNNY
FT                 QNNNRGRGPYRGNYRGSGNSNRGHNSNNQGNVRLTQNNNQNT"
FT   CDS           2790..6455
FT                 /product="Gypsy-11_DBp-I_2p"
FT                 /note="peptidase and reverse transcriptase."
FT                 /translation="PKHIGKLPKPFKYSTINEVRVHTINLSQNIFVSFFNV
FT                 ATGKELIFLIDTGADISILKETSDNFQNIQNDYIIDIKGISQEIIKSQGLV
FT                 SIEIQTTNYIIPHDFHILNSHFPIPCDGIIGIDFIKKYNCQLDFKPSEDWL
FT                 IIRPNNLKFPIKVPIAHSSGNNSILLPARSQVIRKIELNSTADSVLIPNQE
FT                 IQHGIYVANTIATSNNAFIRLLNTTNTDQVVSTDNLTYESLSNYDVVNTNP
FT                 DNRKKSVLSQLSKNFPPQFKSQLTSLCTQYSDIFGLETESITTNNFYKQKL
FT                 RLKDDEPVYIKNYRSPHSQVNEIQKQVEKLISDGIVEPSVSEYNSPLLLVP
FT                 KKSSPGSNAKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCL
FT                 DLMSGFHQIELEKGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIA
FT                 FSGLEPSQAFLYMDDLIVIGCSEKHMLKNLTDVFEKCRKFNLKLHPEKCSF
FT                 FMHEVTFLGHKCTDKGILPDDKKYDVIMNYPVPHDADSARRFVAFCNYYRR
FT                 FIKNFADYSRHITRLCKKNVPFKWTDECENAFQYLKTKLMEPTLLQYPDFT
FT                 KEFCIITDASKQACGAVLTQNHNGLQLPIAYASRAFTKGESNKCTTEQELA
FT                 AIHWAILHFRPYIYGTHFLIRTDHRPLIYLFSMTNPSSKLTRMRLELEEYD
FT                 FTVEYLKGKDNHVADALSRITIKDLQNITRNILKVTTRYQSRQKFRAENQE
FT                 QELPMQSLNKASKPNVYDVINNDEVRKVVTLQIKNMLCLFKQGRKITARYD
FT                 VSDLYTNGVIDLDQFFQRLEMQAGIHKISQLKVAPWENIFEYTSIDKFKLM
FT                 GNKILKTLRVALLNPVTQITNLKEKEAILSTFHDDPIQGGHTGISKTLAKV
FT                 KRHYYWKSMSKDITEYVRKCQKCQKSKITKHTKTPLTITDTPINAFDRVIV
FT                 DTIGPLPKSENGNEYAVTLICDLTKYLVAIPVPNKNANTVAKAIFESFILK
FT                 YGPMKTFITDMGTEYKNSIIDDLCKYLNIENITSTAHHHQTVGTIERSHRT
FT                 FNEYIRSYISVDKTDWDVWLQYFVFCFNTTPSMAHTYCPYELVFGKTSNLP
FT                 KHFNSIDSVEALYNIDDYAKESKYRLEVAYKRARVMLEANKNRNKLLYDHK
FT                 VRDIDISVGDKVLFKNETGHKLDPKYTGPYIVTEIGDRDNIVITNNKHKKQ
FT                 TVHKDRIKIFIS"
XX
SQ   Sequence 6655 BP; 2673 A; 1166 C; 1071 G; 1733 T; 12 other;
     tggcgaccgt gacagcgatg gaaggacatc gaaggacatc gaaggattaa aaggatatac        60
     caacaaggat atacccagga ggatacgcat aatcaaaaaa aaactggata aactggaaaa       120
     tgcaaaataa atcgacaaaa aagaaatctg agtgagtaga gtgaaagcaa tgggcaatcg       180
     cggaggagtc gcgaaaaaaa taaaaaaaag agtagcacac ctaaagtggc tactctacgt       240
     aaacactcca cctcccgcgt gggctacggc ccaaaaactt caaacagaac tagattttct       300
     gaaagaagaa ttaataaaca acaagaataa aagcccaaaa attgccacca ctcactcagt       360
     atcgatwaag aaaattaatg aaaaaataat aacaaaacct ccaccaccaa agccattacc       420
     gaaactaaaa aagacgtgcc cgaaggattg ccctggacca ctggacagcc cccactgcaa       480
     ccacacctgt gcgaggaccg gcaccggtaa cgcctgagtc caaaaggccc cggacagcag       540
     cagcagcaaa tagagtgcgg gaatacgcca cctcctgcgc caccgaggga acgtcagcgt       600
     agccaaaccg gcgacgacca gctgacgtgg gaaaaaaaaa ggaaatcaac tgaggagaaa       660
     catttttttt aacccatgca ctgcgttgca taattttttt gattgcactg cgatgcatat       720
     tttttttata tactataata ttttttgaaa aattgagcgg aacctctttt gcccaatttg       780
     aaagtatggc ccgtatagct gtacaaataa taggtaggaa aaaatgttag ataagaamtm       840
     agatttaaaa aaaaaatttt ttttaatttt aaagggaaaa atacsataaa ttcctaaaat       900
     ttatgtaaaa ttttaattct tttctaatga agaaaaaaaa aaataaattc aaaaatagca       960
     taaattccta aaatttatga aacattttaa taccctttta atgagaagta atagcataag      1020
     taaaacagat caaataaatg attctgacta ttacttccca gaaaaattaa gttacattac      1080
     aaaatatgac tcagagaaaa atataataga aattggaaaa acaaaaacat atacaatatc      1140
     taaaatgggt ttagtagaca cgaaagttgt agattccacg gcaaatgtcg ttaataaaat      1200
     tgaacccgga aaaatcgatc ttcaaacaat tacaatattg ttaatgataa tcgtcattat      1260
     aatgttagca agcgttttgc taaaattata taaattacac aacaaatgtt taaagaaaaa      1320
     attccagagt caagcaaatg acctggacaa aatctaaata aaaaacccag aaaaaaacaa      1380
     aattattata cacaaatgta aacacctaaa atctaagaaa atgaaataac agaaaataaa      1440
     tattaaaata tattacgtaa ttctctttac aaaagtatgg ctaaactaaa ggcatggatt      1500
     ggaacaaatt gtacgaggag ttatcaataa ttaaaaaata attttgacag atcgtacaag      1560
     tctctaactc agaatagacc cattcaaaag aatacggtta ggaagcacgt tgaaatatta      1620
     gtagagtgct ttaatgaagc gcgtatgcta atacatgatc atagggaaag attaaatcaa      1680
     gatcattggt cacaggtatc gaaacttttg atacgactac gatctaattt aatatttatt      1740
     aaacaaaagt tcagtttaga aatatcatta ccaaccgttc taaacactcc aatagcagtt      1800
     gacactgcac ctgactcgga atcaacagaa acgaaagaat ctgagtcaga agagcttccc      1860
     aaagtaaacc ccaaaataga agatgaagat ttaaataatc ttactattcc ggcggtatac      1920
     actgatctgg ataactctac agattcagat acttcgagtg tcatagaata caagatagat      1980
     aaatccatca caatggcaca gtcaaatatt gattttatta atacagcatc taagcttata      2040
     ccagtttttg atggtaaggc tgaaaattta acaagtttca ttgatgcttt acaaataata      2100
     caatcaataa aaggcgagca cgaagaatta gctatttcca tcattaaaac aaagctaaaa      2160
     ggtgtcgcca ggaatctaat cggtaatgaa acaacaatta ctgaggtgat tgctagacta      2220
     agaagcaacg tcaaaggcga aactgttgag gtattatcag cgaagctgat gaatctacag      2280
     cagcgcaata aaactgctaa ccaatacaca caagaaattg agcagatgac gaaagcctta      2340
     gaaggtgcat atatatcaga tggtttatct ttagagctag ccaggaatta ttccatgcag      2400
     catgcagtca aagcaatgac taaaaactgc acaatcgata aggtaaaact tatcatgcaa      2460
     gctggaacat tcagtacgat gaacgaagcc gtttccaaat ttgttaatag ttgcactgaa      2520
     gcaactgggc agtcaaacac tgtcctatat tataagaatt atccacagcg cggctcaaat      2580
     cgcggacgtg gcagttatag aggtagtttt cgtggtaatc acaataacta caatcacaat      2640
     aactacaaca acgataatta taacaacaat tatcagaata acaatagagg gcgaggccca      2700
     tatagaggaa actatagagg cagtggtaac tcaaaccgag gccacaatag caataaccaa      2760
     ggaaatgtaa gattgacaca aaataataac caaaacacat aggaaaactc ccaaaaccct      2820
     ttaaatattc aacaataaat gaagtgagag ttcacactat taatctcagc caaaatatat      2880
     tcgtttcatt ttttaatgta gctactggga aagaacttat atttttaata gacacaggtg      2940
     cagacatttc cattctaaaa gaaacttcgg ataatttcca aaacatccaa aatgattaca      3000
     tcatagacat aaaaggcata agtcaagaaa taataaaatc ccaaggttta gtttctatag      3060
     agatacagac caccaattac ataattccac acgattttca tatcttaaat tcacatttcc      3120
     caattccatg cgatggaata ataggcatcg actttatcaa aaaatacaac tgtcaattag      3180
     acttcaagcc atctgaagat tggcttataa ttagacccaa taatttaaaa ttcccaatta      3240
     aagtaccaat agctcatagt tctggcaata attcaatact tctgccagca agatcccaag      3300
     ttattcggaa aattgaactt aattcaacag cagacagtgt attaattcca aatcaggaaa      3360
     ttcaacatgg tatttacgtt gcaaatacca tagcaacatc caataatgcc ttcataagac      3420
     tattaaacac aacaaatacc gaccaagtag tsagtacaga taatctaaca tatgaatcac      3480
     tttcgaacta cgatgtagtc aacacaaatc cagacaatag aaaaaaatcc gtactatcac      3540
     aactatcaaa aaacttccct ccacagttca agtctcagct tactagccta tgcacccagt      3600
     atagcgatat attcggattg gaaaccgaat caataaccac aaataatttt tataaacaga      3660
     aactgagatt aaaagatgat gaaccagttt atataaagaa ctatcgaagc ccacatagtc      3720
     aggtgaacga aatacaaaag caagtagaaa aattaatctc agacgggatt gtcgaaccgt      3780
     cagtatccga atataatagc ccattgttac ttgttcctaa gaaatcatcc cccggatcaa      3840
     atgcaaagaa atggcgatta gtaattgact accgccagat taataaaaaa ttactatctg      3900
     ataaattccc attacctaga attgatgata ttttagatca actaggtcga gcaaaatact      3960
     tttcatgtct tgacttaatg tcaggattcc atcaaattga actagaaaaa ggttcaagag      4020
     atataacgtc tttttcaacg agcaacggct catatcgctt cacgcgatta cccttcggat      4080
     taaaaatagc tcctaattcg tttcagagaa tgatgactat tgcgttctct ggtctagaac      4140
     cttctcaagc gtttctttat atggatgact taatagtaat cggttgttcc gaaaaacata      4200
     tgcttaaaaa cttaacagat gtttttgaga aatgtaggaa attcaaccta aagctacatc      4260
     cagaaaaatg ttcatttttt atgcatgaag tgacttttct aggtcataaa tgcactgata      4320
     aaggaatact tccagatgac aagaaatacg atgtcattat gaactaccca gttccgcacg      4380
     acgcggacag tgctagacgt ttcgtagcat tctgtaacta ttatagacgt tttataaaaa      4440
     atttcgccga ttattcacgg cacataacaa gattatgtaa aaagaatgtt ccctttaaat      4500
     ggacggatga gtgtgaaaat gcattccaat acttaaaaac aaaacttatg gaacctacct      4560
     tgctacaata tccagatttc actaaagaat tctgcataat aacagatgca agtaagcaag      4620
     catgtggagc ggttttaact caaaaccata atggtctcca acttcccatt gcatacgcat      4680
     caagagcatt tacaaaaggt gaaagtaaca aatgtactac tgagcaggaa ttagctgcaa      4740
     ttcactgggc gatattacat ttcagaccat atatatatgg aacacatttc ttaataagaa      4800
     cagaccatag acctttaata taccttttct caatgaccaa tcccagttct aaactgacac      4860
     gtatgaggct cgaactagaa gaatacgact ttacagtcga atatttaaag ggaaaagata      4920
     atcatgtagc tgatgcgtta tcaaggataa ccatcaaaga tctacaaaat ataactagaa      4980
     atatattaaa agtcactact agatatcaaa gtagacaaaa attccgcgcg gaaaatcaag      5040
     aacaagaatt gccaatgcaa tctttaaata aagcttctaa gcccaacgta tacgacgtca      5100
     taaacaatga tgaagtacgt aaagtagtga ccttgcagat aaaaaatatg ttatgtttat      5160
     ttaaacaagg cagaaaaatt actgcaagat atgatgttag cgatttatat actaatggag      5220
     ttattgattt agatcaattt ttccaaaggc ttgaaatgca agccggtata cataaaatca      5280
     gccaactcaa agtggcaccg tgggaaaata tctttgaata tacttcaata gataaattta      5340
     aattaatggg caataaaata ttgaaaacat taagagtagc gctactcaac ccggtgaccc      5400
     aaataacaaa tttaaaagaa aaagaagcaa ttttgtctac atttcatgat gatccaattc      5460
     aaggaggtca tactggcata tcaaaaactt tggccaaagt aaaaagacac tattactgga      5520
     aaagcatgtc taaagatata actgagtacg taagaaaatg tcaaaaatgc cagaaatcca      5580
     aaataactaa gcacacaaag acccctttaa caattacaga cacaccaata aatgctttcg      5640
     acagagtgat agtggacact attggtccac tgccaaaatc agaaaatggc aatgagtatg      5700
     cagtcacttt aatatgtgat ttaactaagt atttagttgc catacctgtt ccgaataaaa      5760
     atgccaatac tgtcgctaaa gcaatatttg aatcttttat cctgaagtac ggtccaatga      5820
     agacgttcat tacggacatg ggaacagaat ataagaattc aattatagac gatttgtgca      5880
     aatatttaaa tattgaaaat attacatcca cagcacacca ccaccagaca gttggaacaa      5940
     tagaaagaag tcatagaact ttcaatgaat acatacgatc ttacatatcg gttgataaaa      6000
     ctgattggga cgtatggctt caatattttg tcttctgttt caacacgacc ccctctatgg      6060
     cacatacwta ttgtccatat gagctagtat tcggtaaaac aagtaatttg ccaaaacatt      6120
     ttaatagcat agatagtgta gaagcactat ataatataga tgactatgct aaggagagta      6180
     agtatagatt agaagtagcc tataaaagag ctagagttat gttagaagca aataagaata      6240
     gaaataaact actatacgat cataaagtaa gggatataga tatatcagta ggtgacaaag      6300
     ttttatttaa aaacgagaca ggtcataagt tagatcctaa atatacaggt ccgtatatag      6360
     taacggaaat aggagataga gataacatag taataacaaa taataaacat aagaaacaaa      6420
     cagttcataa ggatagaata aaaatcttta tttcataaat tgcacttagt atggccatac      6480
     aaagacacac atacatagat aaataaatac acatattctt ttaataattt cattttcttt      6540
     gattctaata acataaaama acamaaaaww aataaawaaa aaggatgtac tawttggaaa      6600
     tttttattat aaaaataact tcattgtatt acgttatttt tcaaaaggag ggaga           6655
//
ID   Gypsy-11_DBp-LTR repbase;    DNA;    INV; 446 BP.
XX
AC   .
XX
DT   22-OCT-2019 (Rel. 24.10, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-446
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 19(10), 1971-1971 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 446 BP; 136 A; 114 C; 82 G; 114 T; 0 other;
     tgtagtatgc acatatattg aatacccact gtaccgagag tacttaaagg gtgcgcactg        60
     taacactttg ttgcagtgtt tacataatcc aaagtcccgg tcataaaccc taagtggccg       120
     aaatatgaac cgatcgttat gccttagccc gcacacagaa agtgctagtg tcagcataat       180
     cgtaacaaac ggtcagcata tgcatacccc tcgcgcctcc acttgagagc gcataacaac       240
     atatattatt atattccttt atatataagt acatagccgt ctctctgccg ccgcctgcga       300
     gcagcgctgc tacgagactt agccttactt agacttaaga aatattgtaa aagaacagag       360
     acattttgat cgttggagcg gcacctcagc tgctccttcc aaataaagac caactaaaac       420
     caatcccctg gagttatcct atcaca                                            446
//
ID   Gypsy-11_DEl-I repbase;    DNA;    INV; 4397 BP.
XX
AC   .
XX
DT   19-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4397
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 530-530 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1948-2490] - Reverse transcriptase
CC   Positions [3505-3981] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..4380
FT                 /product="Gypsy-11_DEl-I_1p"
FT                 /translation="MACLNDLISNTLKSASKESICALHKFIFEGEGDRNNR
FT                 KRLREFAGFQYDENDAIYKSKCVYIHAKLKDKDLISICAVLGINYDVENLQ
FT                 LHIFRNLQFGKLLFFNEVDDSENEETDEEKENDEDSQNDDEIRSVISTGVE
FT                 IPSTGERKRKSNSQRIKEVDMPRFALSFRDIEESIKHFDGSDEIPVEVWIS
FT                 DFEDQALLMGWNALQKLIFAKKSLKGVAKMFILSEKGLNSWNALKESLLNE
FT                 FRSRVSSKQIHMQLGESKRRANENVQEYFYRMKDIASRGNVEEEALIQYVI
FT                 DGIDELSLNKSILYGAKNMNEFKYKLKDYQTISAKSKVLEGSVKDKNAFAA
FT                 KSGSKGGKKEVVCYNCGEKGHISGGCSNKEKGRKCFKCNKFGHISKNCPQS
FT                 EKAVEESKPNARVLSEHSDMTSKAVSIQNQNCVALFDTGSKFNILREDLYK
FT                 QLALPRLKECSVYLIGFGKDRNANKIKPIGQCKQAVSIDNSVYDLNFFIVP
FT                 CDCMDTRLIIGEELCLQAEVSFSPSGLRVRKLNNLDEDELESNLMQIEAVL
FT                 DNEELDINQSASEYAKKEVRELITKYIPKPSKSTNIEMKIILNDETPIFSR
FT                 PRRFAFAETKVIDDQIEQWLSNGVIEESDSEFTSPVVLAKKNDGSQRLCVD
FT                 FRRINKVIIKDHFPLPLIDDQLDRLQEAMMFSTIDLRNGFFHVPVADSSKK
FT                 YTSFVTQSGQYQFLKVPFGLSNSPGVFQRHINAIFRTLTRRGIALPYVDDI
FT                 IIPAKDEKEAVSNLKEVIGTCSNYGLELNLKKCHFLQTRIQFLGHIIENKT
FT                 ISPTPQKIDAVSKFKTPQNLKQLESFLGLTGYFRKFIYNYALISKPLTDLT
FT                 KNKANFVIGPEEENAIESLKKYLTSTPVLAIYNPKYDTEVHTDASIDGFGA
FT                 VLLQKSPDDGQFHPVYFMSRKTTDAQRKYSSYELEVLAIIEAITKFRVYLL
FT                 GIPFKIITDCNAFAKTLDKQSLCTRVARWVLLLQEYDYKVEHRSGSRMKHV
FT                 DALSRYPIMTIVDDSIALGFKQAQEKDEHLKAIIKILEDSNSPYEDYFLKA
FT                 GVLYKLFKDLELIGMQKQIIGRAHDRGHFAIKKTKALICNEYFIENIDEKI
FT                 QKYIDCCIPCILTNRKRGKQEGWLHPLHKEDFPLHTYHIDFLGPLDSTSKN
FT                 YKHILAVIDSFTKFCWLYPTKSTTASEVIAKLRGQSYIFGNPACIISDRGS
FT                 AFTAQDYLQYCEDEGIKVVKSTTGLPRVNGQVERLNAIIISVLSKLSVDDP
FT                 TKWYRHVDRVQQAINSTFSRSIDATPFEVLIGVKMRNKDDQKLQEIINNES
FT                 IALFQNTRNDLRLKAKSQILKIQTENKKTYNLRRKPAKTYKIGELVAIKRT
FT                 QFGGGLKLKPKYLGPYEITKVKHNNAYDVQKVGNSDGPKISSTCAEYLKPW
FT                 PTLEDKDETFEANV"
XX
SQ   Sequence 4397 BP; 1482 A; 879 C; 956 G; 1079 T; 1 other;
     catttgggag ctcgccggga agtatccgag gaaagctgaa ggtgaaagtg aaaagtgact        60
     aaagacgact gtgaaaataa matttttttc taaactatgg cttgcctaaa cgatctgatt       120
     tccaatacgc tgaaaagtgc atcgaaagaa agcatttgtg cacttcacaa attcatattc       180
     gaaggagaag gggacagaaa caatcgcaaa cgtttacgtg aatttgctgg ctttcagtat       240
     gacgaaaatg acgcaattta taaatccaaa tgtgtataca tacacgcgaa attgaaagac       300
     aaagatttga tatcaatatg cgcagttttg ggaattaact acgacgtaga aaatttgcag       360
     ctgcacattt ttcgcaatct gcagtttggc aaacttctct ttttcaacga agtggacgat       420
     tcagagaacg aggaaaccga cgaagagaag gaaaatgacg aagacagcca aaatgatgat       480
     gaaattagaa gtgtaatttc aacaggagta gaaatacctt ctacaggcga aaggaagaga       540
     aagtcgaatt cgcaacgaat caaggaagtt gatatgccgc gttttgctct aagttttcga       600
     gacatagaag agtcaattaa acattttgat gggagtgatg aaattccagt tgaggtatgg       660
     ataagcgact ttgaagatca agccttactt atgggttgga atgcgctaca aaagcttatc       720
     ttcgccaaaa agtcacttaa aggtgtcgct aagatgttta tattgagcga aaagggatta       780
     aattcgtgga atgcattaaa ggagtctttg ctaaatgagt tcaggtcgag agtaagcagc       840
     aaacaaatac atatgcaact aggagagagc aaacgacgtg caaacgaaaa tgtgcaagaa       900
     tacttttatc gcatgaaaga tattgcatcc cgaggaaatg ttgaggaaga agctcttatt       960
     caatatgtga tcgacggtat cgacgaactt tctttaaata aatcaattct gtacggtgct      1020
     aaaaacatga acgaattcaa gtacaaattg aaggactacc aaacaataag tgcgaaatcg      1080
     aaagttctgg aaggaagtgt gaaagacaaa aacgcttttg cagcaaaaag tggttcaaaa      1140
     ggtggcaaaa aggaagtcgt ttgctacaac tgtggtgaaa agggacatat ttctggtggc      1200
     tgcagcaaca aagaaaaagg aagaaagtgt ttcaagtgca acaaatttgg acacatttcc      1260
     aagaattgtc cacaaagtga aaaggcagtc gaagaaagca agcccaacgc gcgagtttta      1320
     agtgagcaca gtgacatgac gagcaaagca gtttcaattc aaaatcagaa ttgcgtggcg      1380
     ctgtttgata cgggcagcaa gttcaacatt ttgcgcgaag acttatacaa gcagttagct      1440
     ttgccaaggt tgaaagagtg cagtgtatat ctaattggat ttggaaaaga tcgcaatgcc      1500
     aataagatca agccgattgg acagtgtaag caagcagtat cgattgacaa cagtgtttat      1560
     gacttgaact tcttcatagt tccgtgtgat tgtatggaca ctcgtttgat aataggggaa      1620
     gaactgtgct tgcaagcaga agtttcgttc agtccaagtg gtttgcgtgt gcgaaagttg      1680
     aacaatcttg acgaagatga attggaatcc aatttaatgc aaatcgaagc agtgcttgac      1740
     aacgaagaac tcgatattaa tcaatcagcc agtgagtatg caaagaaaga ggtgcgtgaa      1800
     ctaataacga agtacattcc taaaccatcg aagtcaacaa acattgaaat gaaaatcatt      1860
     ttaaacgacg aaaccccaat tttttcgcgt ccgcgtagat ttgcattcgc tgaaacgaaa      1920
     gtaattgacg atcagatcga gcagtggctc tcaaacggcg taatcgaaga gtccgactct      1980
     gaatttacaa gcccggtagt gcttgctaag aaaaacgacg gttcccaacg actttgtgtg      2040
     gatttcaggc gtatcaacaa ggtaataata aaagaccatt ttccgttgcc cctgattgac      2100
     gaccagcttg atcgcttaca agaagctatg atgttcagca cgattgactt gaggaatggc      2160
     ttttttcatg tgccagtagc cgattccagc aagaagtaca cctcattcgt gacccaaagc      2220
     gggcagtacc agttccttaa ggtgcctttt ggtttgtcaa actcacctgg agtgtttcag      2280
     agacacatta atgcgatttt ccgaacgctg actcgcagag gaatcgctct cccttacgtt      2340
     gacgatatca ttataccagc aaaggacgaa aaggaggctg tatcgaacct caaagaagtt      2400
     ataggaactt gcagcaacta tgggctagaa ctcaacctaa agaaatgtca tttcctgcag      2460
     acccgtattc agtttttagg tcacatcatc gagaataaaa caatttcccc gacgcctcag      2520
     aagatcgatg ccgtttcgaa attcaagact ccacagaatc tcaagcagct agagagtttt      2580
     ctgggtctta ccggatactt tagaaagttt atctacaact atgctcttat ttcgaaaccc      2640
     ctgactgatc tgactaaaaa taaagcaaat ttcgtaattg gtccagaaga agagaatgcg      2700
     attgaatcct taaaaaagta cttgacttcc acccctgttt tggcaattta caacccgaag      2760
     tatgacaccg aggtacatac tgatgcatca atcgatggtt ttggcgccgt gcttttgcaa      2820
     aaatcaccag atgacggcca atttcaccct gtctacttca tgagtaggaa aacaacggat      2880
     gctcagcgaa aatattcaag ctacgaatta gaggtgttag cgattatcga ggccataaca      2940
     aagttcagag tgtatctcct tggcattcca tttaagataa tcacagattg taatgcattc      3000
     gcgaagacgc tagacaagca aagcctgtgc actagggttg cacgctgggt acttttgctc      3060
     caagagtacg actacaaagt tgaacaccgt tcaggttcac gtatgaagca cgttgatgcc      3120
     ctttctaggt acccaataat gacgatcgtt gacgactcca ttgcccttgg tttcaagcaa      3180
     gcgcaagaaa aagatgaaca cctgaaagcg attattaaaa tcctagaaga ctccaactca      3240
     ccatatgaag actattttct gaaggccggt gtcctgtaca aacttttcaa ggacttagaa      3300
     ctgattggaa tgcagaagca gatcattggt agagcacatg accgaggaca ctttgctatt      3360
     aaaaaaacga aggcgctgat ttgcaacgag tattttatcg aaaacattga cgaaaaaata      3420
     cagaagtaca tcgactgctg cattccgtgc attttgacca accgcaagcg tggcaaacag      3480
     gagggctggt tacatccatt gcacaaagag gatttcccgc tgcataccta tcacattgat      3540
     ttcttaggtc cactagactc cacaagcaaa aattacaagc acattctcgc cgtaatcgac      3600
     tcctttacga aattctgttg gctttaccct accaagtcaa ccactgccag cgaagtcata      3660
     gccaaactac gaggccaaag ttatatattt ggtaacccag cttgcattat atcggaccga      3720
     ggctcagctt ttaccgcgca agactatctt cagtattgcg aagacgaagg cataaaggtg      3780
     gtgaaatcaa cgacaggcct accacgtgtt aacggacaag tggaaagact gaatgccatc      3840
     attatttcag ttctatccaa actgagtgtg gatgatccca caaagtggta cagacacgtc      3900
     gatcgagttc aacaagccat taactccact ttttcgagaa gcatcgacgc cactcctttt      3960
     gaggttctaa tcggagtcaa aatgagaaac aaagatgacc agaagcttca agaaattatc      4020
     aacaacgagt ccatagcctt gtttcagaac acgcgcaacg accttcgact caaggcaaaa      4080
     agtcaaattt tgaaaatcca aaccgaaaac aagaagacct acaacttacg acgtaaaccg      4140
     gcaaagactt ataagattgg tgaactagta gccataaaac gaacgcagtt tggcggcggt      4200
     ctcaaactaa aaccgaagta tttgggtcct tacgaaataa ccaaagtgaa gcacaataat      4260
     gcctatgatg tccaaaaagt cggcaactca gatggaccaa aaatttcttc aacctgtgca      4320
     gagtacctta agccgtggcc caccctcgaa gacaaagacg aaacattcga ggcgaatgtt      4380
     taatcagaat ggccgaa                                                     4397
//
ID   Gypsy-11_DEl-LTR repbase;    DNA;    INV; 427 BP.
XX
AC   .
XX
DT   19-JUL-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DEl-LTR.
XX
NM   Gypsy-11_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-427
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 531-531 (2012).
XX
RN   [2]
RP   1-427
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 427 BP; 164 A; 85 C; 94 G; 84 T; 0 other;
     tgtaggagtg agattgtatt attccccgaa tccctcacat aaaaccccag cattcgtata        60
     acatgacgcc ctagacaacg agagaagcaa ctaaaacgaa gaagacgagt agatgatcaa       120
     aagacgaatt ccaagaagac gagcgttcta agaagacgag cgttccaaga agacgagcgt       180
     tccaggaaga cgagcagacg acgatcacta caacgagatg tgacgacgag gagacgagca       240
     gagcaacata tcgagaggac gagcgttagt tgctgacgag atcgagttga gtaaagacgt       300
     gctcaagcga acgacgtgtg acgacgaaac gacggttaaa tcaaacacaa agattactta       360
     ctatgttaat taatattaat aatctaactt ttaaattata actttcttaa taaataaaaa       420
     ccccaca                                                                 427
//
ID   Gypsy-11_DEu-I repbase;    DNA;    INV; 4549 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DEu_;
KW   Gypsy-11_DEu-LTR; Gypsy-11_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4549
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 869-869 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2477-2851] - Reverse transcriptase
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1305..2438
FT                 /product="Gypsy-11_DEu-I_2p"
FT                 /translation="MEISKPINLDEESLVSYFIDGIPDSQVNKAGLYRANS
FT                 IRELKAELSIYEKMKGKGNTKDNLNRESTGKPTQSNFQRKCFKCNSEGHIA
FT                 KDCKGEVICYKCNKKGHISKNCDENKETISVKKEFANILEVKAAKGLIYKK
FT                 MKAEGVTFIAMIDSGCDLCLMREDIFRSFDGLKLKPVVKHLRGIGKGELVT
FT                 VGCFDVDLEADGVCFSVTFHVAKQNELEYSAVVGNDVLQSVDVMFSSNGVE
FT                 FRAKERDFASTFNGMCVTEIVEKSSVLDKINLSHLADNQKLKVQQLVTEYK
FT                 PIKSIESPVSMRIVLEDDIPVYQRPRRTSYENRCFIEKQVQEWLAEGIIVP
FT                 SSSEYASPVVLVAKKDGSRRFCCDYRRLNQKIKKE"
FT   CDS           2447..4528
FT                 /product="Gypsy-11_DEu-I_1p"
FT                 /translation="MSLIDDVLDRLQGSKIFTTLDMTNGFFHVPIDEESRK
FT                 FTAFVTHNGQYEFTHVPFGISNSPAVFCRYVTATLRDLIQTQTIVVYMDDI
FT                 IVPSKDENEGLKALEKVLSVASRAGLRIKWEKAQFLKSKINFLGYMIENGT
FT                 IAPTNEKIKAVVNFPIPQSRQALQRYLGLTSYMRRFIKDYALTAKPLSDLL
FT                 RMKSNTKDDRNLKLTEQGLISFNLLKQLLVSAPVLKLFDPMATTEVHTDAS
FT                 KYGFGGVLMQRDSEDQQFHPIEFMSRKTNGCEEKYGSYELEVLAIVNALKK
FT                 WRVYLLGKPFTVVTDCNAFAMTIKKDDLPPRVARWAMALQEFEFKIEHRAG
FT                 TKMRHVDALSRLSCFLIADSTKSRLVEAQDSDSWIKAVKTILTNNHDYEDY
FT                 FLKNNILYKDAVLELLVVPETMEDEIVSVARKEGHFGIKKTRDILEKSYYI
FT                 PRIQQKVERVVKGCVECLIIDSKRGKKEGLLSPIDKAQEPLGTYRIDHVGP
FT                 LTDTKKRYNHIFAHPRGNGQVERIHKIVIPMLSKMCQENPQNWYRHVDRVQ
FT                 QIINNTPPRTTKYSPFQILTGSNMRKRDDEFLKVFEDLEIEELNEEREEIR
FT                 KKARQNIEKVQQENGGSFNEKRKLETEYAVGELVAIKRTQYGTGMKLRPKF
FT                 FGPYKVTKKLNHGRYEVKKEGNQEGPNITTTAAEYMKKWGSFRGE"
XX
SQ   Sequence 4549 BP; 1550 A; 846 C; 1089 G; 1061 T; 3 other;
     aattattggg ggctcgnccg ggattataaa aggaaaaaag aacaaagaga aaactgtgcg        60
     ttaacacatc gaaaactgtc gcgacgaaga atgaagtgaa gactgagaaa aaagaagtaa       120
     aaactgaaaa gcgttggatg taattgttaa acaagaacag ataaagacga ggaaaatcta       180
     aaaagttaaa aagatcgact aacgttgaag cagcgaattg gtgtacacag actacaaaag       240
     tgccaaaaat tttgcaaaaa ctttactgtg agcgtaccca aaaattaact cgaaaaaaaa       300
     acttgcaacg caaaatctgc gcagtagaga aaagagaacg acgacataca gcagcggact       360
     ggccacttgc tatttttgcg acaacaaaaa attccctgtg gcgaaaagag gagctgcaag       420
     atcttgcaaa cgacgcaatc cgccaaaaaa ttgcgagaga cgagcaagaa gtggcaacga       480
     gacgagcaag cagtgcagcg tgacgacatc gtagaagagt acgagctgga gtagcagagt       540
     ggactggatt ggcaaaattc aagcagacgt agaagacagc aaaatccaat tgggtgtggt       600
     gagcgactga ggcgatttca tatatttaat ctgatttgaa ttttttttga atacacgaat       660
     tgtttaacgt caattaaatt cttactttgt tgtatcaaaa catttaaata ttgaattgta       720
     ccactgtttg taaacggctt gaacgcatta ctatggatgc tagaacgatc ctcgctatga       780
     ctgtgcctct actaagggca aagttatccg aactaggttt ggatacaact ggcagaaaag       840
     gagctttgca ggatcggttg ttcgatcatt atgcattaga tgtggctgac gatgaggacg       900
     gcgaggctga tggggaagtt gcgagtatta gtagtgcttc caattaccaa gaggcggttc       960
     aacctagtag ctcgagattt acactacgcg atattcagga cagtgtttca tcattttcag      1020
     gctccgaaca ggaagacgtc aatcactggc tgtctgaatt cgatgacgtt gcagttaccg      1080
     tgggttggga taatttgcag aaatttattt atgctaagca acttctgatt ggagcagcca      1140
     agctctacat taaangtaca aggggagtta ggggttggat tgagctgaaa aacgcgttga      1200
     aggaagaatt cggtaaaaag ctatgttcgg cagagataca caagattttg cgcaaaaggc      1260
     aaaaacaacc aaaagagaca tgcctcgagt atctctatag tttaatggag atcagcaaac      1320
     cgataaatct tgatgaggaa agtctagtat cgtacttcat agatggcatc ccagatagcc      1380
     aggtcaacaa ggcagggttg tatcgagcga attccattag ggaacttaaa gccgaattaa      1440
     gcatttacga aaagatgaag ggtaagggaa atactaaaga caatttgaac agggaatcga      1500
     caggtaaacc gactcagagc aattttcaaa ggaaatgctt caagtgtaac agcgaaggcc      1560
     atattgctaa ggattgcaaa ggcgaagtaa tatgttacaa gtgcaacaag aaaggacata      1620
     tctctaaaaa ttgcgatgag aataaagaaa ctatttccgt taagaaagag tttgcaaaca      1680
     tactggaagt aaaagctgcg aagggactca tttacaaaaa gatgaaagct gaaggagtga      1740
     cattcatagc catgattgat tcgggatgtg acttgtgttt gatgagagag gacattttca      1800
     gaagttttga cggcttgaag ctaaagccag tagttaagca cctgagaggt atcggcaagg      1860
     gcgaacttgt gaccgtagga tgtttcgacg tcgatcttga agctgatggt gtatgcttct      1920
     cggtaacttt ccatgtcgcc aaacagaacg aactcgagta ctctgcggtt gtgggaaacg      1980
     atgtgctaca gtcagtcgac gtaatgttca gttccaacgg cgtcgagttc agggcaaaag      2040
     agagagactt tgcatcgaca tttaatggaa tgtgtgtcac ggagatagtc gagaaaagtt      2100
     ccgtcctaga taaaattaat ttatctcacc tggccgacaa tcaaaaacta aaggtacagc      2160
     agcttgttac agagtacaag ccaataaaat cgatagagtc tccagtgagc atgagaatcg      2220
     tgttggaaga cgatattcct gtatatcaac gcccaagacg cacatcatac gagaacaggt      2280
     gtttcataga gaagcaagtg caggaatggt tggcagaggg aattattgta cccagctcct      2340
     cagagtatgc ttcgccagtg gtcctggtag ctaaaaagga cggatccaga cgattttgtt      2400
     gcgattatcg ccgactcaat caaaaaatca agaaggaaat nttccgatga gtctaattga      2460
     cgatgttctc gacaggttgc agggatcgaa aatattcaca accctggaca tgacgaacgg      2520
     tttctttcat gtgccgattg acgaagaatc caggaagttc acagcgttcg tgacgcataa      2580
     cgggcagtac gaatttactc atgtaccgtt cggtatctca aattctcctg ctgttttctg      2640
     tcgatatgtc acggctactt tgagggatct tattcaaacg caaacgatcg tggtctatat      2700
     ggacgatata atcgtgccaa gcaaggacga aaatgaagga ctgaaggcgt tagaaaaggt      2760
     attgagcgtg gcttcgaggg ctggattacg aatcaagtgg gaaaaagcac aatttctcaa      2820
     gagcaagatc aatttcttag gctacatgat tgagaacggt accatagcac ccaccaacga      2880
     gaagattaaa gcagtcgtca attttccaat tcctcaaagc agacaagctt tgcagcgata      2940
     cttgggtctg acgtcatata tgcggcgctt cattaaagat tacgccctca cagcaaaacc      3000
     cctaagcgac cttcttcgga tgaaaagcaa cacaaaggat gacagaaatc tcaagttgac      3060
     tgagcaagga ctaatttcgt ttaacctttt gaaacagcta cttgtgtcag caccagtact      3120
     caaactgttc gatccaatgg ctacaaccga agttcataca gatgcaagca aatatggctt      3180
     cggaggcgtt ttaatgcaga gggactcgga ggatcagcag tttcatccta ttgagttcat      3240
     gagcaggaaa acaaacggtt gcgaagaaaa gtacggttcc tacgagctcg aggttttagc      3300
     aatcgtaaat gcgttgaaaa agtggcgagt ttaccttctt ggtaagcctt ttaccgtggt      3360
     taccgattgc aacgctttcg caatgacgat caagaaggat gatctaccac caagagttgc      3420
     cagatgggcc atggctctgc aagagtttga atttaagata gagcacaggg ctggaactaa      3480
     gatgagacac gtggacgcat taagccgttt gtcatgcttt ctaatcgcag attctacaaa      3540
     gtcacgttta gtggaggcac aagacagcga cagctggata aaagctgtta aaaccatatt      3600
     aaccaacaac cacgactacg aagattattt cctaaaaaat aatatcctgt acaaagacgc      3660
     agttcttgag ctgttagttg ttccagagac aatggaagac gaaattgtca gcgtagcacg      3720
     caaagagggc cacttcggta taaaaaagac tcgcgatatt ttggaaaagt cgtattatat      3780
     acctagaatc caacagaagg tagaacgagt tgttaaagga tgcgtggaat gcttgatcat      3840
     cgactccaaa cgtgggaaaa aggaagggtt actcagtccc attgacaagg ctcaggaacc      3900
     tctcggaacc tatcgcatcg accacgttgg acccctcacc gacacaaaga aacgctataa      3960
     ccacatcttt gctcatccca gaggtaacgg ccaagtggaa agaatccaca aaattgtcat      4020
     tccgatgctg agcaaaatgt gccaggaaaa cccacagaat tggtatcgtc acgtagatag      4080
     agttcagcag ataattaaca acactccacc tcgaaccacc aagtatagtc cgttccaaat      4140
     cttgaccgga tcgaatatga gaaagaggga cgacgagttc ttgaaagttt ttgaagactt      4200
     agaaatagaa gaactaaatg aagaacgtga agagatacga aagaaagctc ggcaaaatat      4260
     agagaaagtt cagcaagaaa acggagggag ttttaacgaa aaaaggaagt tagaaactga      4320
     atatgccgta ggagaattgg ttgccataaa aagaacacag tatggaactg gaatgaaact      4380
     tcgtccaaaa tttttcggcc cttacaaagt aactaaaaaa cttaatcacg ggcgttatga      4440
     agtaaagaaa gaaggtaatc aggagggacc aaacattact acgacagcag ccgaatacat      4500
     gaaaaaatgg ggttcattca ggggcgaatg aagattcagg atagccgat                  4549
//
ID   Gypsy-11_DEu-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DEu_;
KW   Gypsy-11_DEu-I; Gypsy-11_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-337
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 870-870 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 337 BP; 105 A; 67 C; 54 G; 111 T; 0 other;
     tgtgggatat gggtatatta aggtattaag cagcctattt aatttcatat ggggacacac        60
     tgttcggaat tccacaacct cgtagctttt ttccatcagc caaaacgcca tatagaactg       120
     tctcttttca tcaaagaatg tctataccca tcaccctctt cctaatagaa attgcgcctt       180
     actaatttaa gttgaagtca gtcgattgcg aatattgaag agagcaagtg tcatccatag       240
     agtgcggaag tcgtgaagtt taatacaaaa cctttgtttc tttaatttac ctttatatat       300
     atccgaaata aacattatca atttgtacta ccctaca                                337
//
ID   Gypsy-11_DFi-I repbase;    DNA;    INV; 4591 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DFi_;
KW   Gypsy-11_DFi-LTR; Gypsy-11_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4591
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 909-909 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2267-2695] - Reverse transcriptase
CC   Positions [3825-4301] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(527..2659,2663..3631)
FT                 /product="Gypsy-11_DFi-I_1p"
FT                 /translation="MQLEEIMLMRCTDLRAKLGELNLVTTGRKRDLQDRLL
FT                 AHFGIEDDDDNNDEESVVESVVTARDCPVEPMPVSRSLFTLKDVEGSVSNF
FT                 AGTTSPDIEHWIQELEECALTVQWSQLQLFIYSKQLLSGAAKSFIRSQVNI
FT                 RDWDSLKAALRGEFSVKISSAEVHRKLDQRVQRKGETLQEYLYALMEISKP
FT                 VRLDEDSLIEYFVKGIPDAKANKIMLYQAKTIKDLKEQIEVYKKVRGTYKV
FT                 PFKNEQRLAEVDGSKSFESRPELVRKCFKCGDPSHFKRDCKKKDNNNCYRC
FT                 GQPGHRAAQCKVEVEVKKESNANTVHVENAAIKPKSEFTASGLELKVVKHA
FT                 VVQFKGLVDTGADLCLMRRNIFLKLGSKIHTGKEKCLTGIGESQVWTFGSI
FT                 TIPVEIDSLHMEVEFHVIPDQDMGFDAILGRTILDTVDMKVTKEGTKFLRR
FT                 DEPSSQNEKQSTLKNDFLESFKGMCAEQVTVSDQVDLSHLNQSQKFKVKVL
FT                 IEEYTPERNANAPVNMKIILKDEIPVFQHPRRLPICDQKTVDDQVKEWLTE
FT                 KIIQPSTSEYASPVVLVSKKNGKKRLCCDYRKLNEKIVRDNFPMAHMETVL
FT                 DKLQGSRIFTTLDLTNGFFHVPIEPGSRKYTSFVTQSGQFEFLYVPFGISN
FT                 SPAVFTRFIMAVLRELIATNVVVVYMDDVIIPSQDIEEGLFKLKNVLHVAS
FT                 RNGLRINWSKCILQSKVQFLGYIIQNGTITPGLEKIQAVKEFPIPRDKKGI
FT                 QRFLGLTSYFRKFINGYASIARPLSDLLRGDSKFEFGEAQQLAFENLKSAL
FT                 ISEPVLKLYNPNLPTEIHTDASKYGFGAVLLQKDHEDSAFHPVQYMSRKTS
FT                 PFEEKYDSYELEVLAIIGALVKWRVYVLGMKFTIVTDCNAFKMTMNKKEVP
FT                 LRVARWALYLQDFDYKIEHRSGTKMKHADALSRVSCYYLSDSITHRLKEAQ
FT                 INDEWTKAVRSLLEKDAYQDFYIQNDVLFKDPNRELVVVPSSMENEIIQIA
FT                 HNQGHFSAKKTQDLVRKVVLYSKAESKI"
XX
SQ   Sequence 4591 BP; 1478 A; 868 C; 1150 G; 1091 T; 4 other;
     attttggggg ctcaaccggg atttgaccca aacataaagt gcaaggaagt ggagaacgtg        60
     agcgacgacc agcgaagcga aggaaaaagc atacatacac acgtacacac gtctcgctgc       120
     agaggaattt atgtatccat ctgggagtat gtgtatgtac tgcaacttct aggcggagaa       180
     ggaggcggta aagcagacgg agaaggaggc ggtaaagcag acggagaagg aggcggtaaa       240
     gcaggcggag aaggaggcgg taaagcagac ggagaaggag gcggtaaagc aggcggagaa       300
     ggaggcggta aagcaggcgg aggcaaggag aaggcgaagg ataagaaggc ggtaaagcga       360
     aggagaagaa gacgaagaag gcgatcgaag gagacgaaga tccaattgga aatcagaatc       420
     tttaaagcag ggcaagcaag cagcagaccg tatgtagaaa acctgtaaag tagaaaacct       480
     gaacatcaag aaattgttat tgttaagctt aaaattaatt atcataatgc agctcgagga       540
     aattatgtta atgcgttgca ctgatttgcg cgcaaagtta ggagagctaa acttggtgac       600
     aaccggcaga aagcgcgatt tgcaagatcg actcctagcg cattttggta tcgaggacga       660
     cgacgacaat aacgatgagg aatccgtagt cgaatccgtc gtaaccgctc gcgattgtcc       720
     cgtggagcca atgcctgtta gccgatcttt gtttaccctt aaagatgtag aaggcagtgt       780
     gtcgaatttt gcaggtacaa ctagcccaga tatagaacac tggatacagg agttggagga       840
     atgtgcttta actgtgcagt ggagtcagct ccaactattc atttactcga aacagttact       900
     aagtggggca gctaagtcgt ttattcgcag tcaagtaaac attcgcgact gggattctct       960
     taaggcagca ttgcgcgggg agttttctgt taaaatatca tctgctgagg tgcatcgcaa      1020
     gttagatcag cgtgtacaaa ggaaagggga aacactacag gaatatttgt acgcattaat      1080
     ggaaatttcg aagccagtta gactagatga agacagtttg atcgaatatt tcgtgaaagg      1140
     gatcccagac gccaaggcga ataagataat gttgtaccag gccaaaacaa tcaaggacct      1200
     caaggagcag atcgaagtgt acaagaaagt tcgtggcacg tacaaggtac cttttaaaaa      1260
     cgaacagcgt ttagctgagg tggatggctc caaaagtttt gagtcgagac cagagttggt      1320
     gcgcaaatgc tttaagtgcg gtgatccgtc ccactttaag agagattgca agaagaagga      1380
     caataataat tgttatcgtt gcggacagcc aggtcatcga gctgcgcagt gtaaggtcga      1440
     agtcgaggta aaaaaggaga gtaacgctaa caccgttcac gtggagaacg cagccataaa      1500
     gccaaaaagc gagtttacag cttctgggct cgaactaaaa gttgtcaaac atgctgttgt      1560
     tcaatttaaa ggactcgtgg acacaggtgc agatctatgc ttgatgcgca gaaacatttt      1620
     cctcaaactt ggcagcaaga tccatactgg aaaggagaaa tgcttgaccg gaatcggaga      1680
     gagtcaggtg tggacgtttg gcagtatcac catacctgtt gagatagaca gcctgcacat      1740
     ggaggtggag ttccacgtga tcccagatca agacatgggc tttgacgcca tcctaggcag      1800
     aactattctt gatacagtcg acatgaaagt cacaaaagaa ggcactaagt ttttgcgtcg      1860
     agacgaacca agtagtcaaa atgaaaagca aagcactttg aaaaatgatt tcctagaaag      1920
     ctttaagggc atgtgtgcag aacaggtgac agtatcggat caagtagatt tatctcattt      1980
     aaatcaatca cagaagttca aggtcaaagt tttgattgag gagtatacac ctgaaagaaa      2040
     cgcgaacgca ccagttaaca tgaaaatcat tctgaaggat gaaattcctg tctttcagca      2100
     tccgcgtcgt ttacctattt gtgaccagaa aactgtagac gaccaagtaa aggagtggct      2160
     tactgagaag atcattcaac caagcacctc tgaatatgca tcgccagtag tattggtctc      2220
     taagaaaaat ggaaagaagc gtctatgttg tgactaccgc aaacttaacg aaaagatagt      2280
     tcgtgacaat tttccgatgg cgcatatgga gactgtgctt gacaagctac aggggtccag      2340
     gatattcacc actttggacc taacaaacgg atttttccac gttccgatcg aaccaggttc      2400
     ccgaaagtat acctcatttg tgacccagtc tggacaattt gaatttttgt atgtaccttt      2460
     tggaatatct aattctcctg cagttttcac cagatttatc atggcmgtct tgagagaact      2520
     catcgctacc aatgttgtcg ttgtatacat ggacgacgta attattccca gccaggacat      2580
     cgaggaagga cttttcaagc taaaaaacgt tttgcatgtc gcatctagga acggtttaag      2640
     aatcaattgg agtaagtgtm agatwctgca gagcaaagta cagttcttag gctatatcat      2700
     tcagaatgga accattactc caggacttga aaagatacag gctgtaaaag agtttccgat      2760
     acctcgagac aaaaagggca ttcagcgttt tctaggactt acttcctatt tcagaaagtt      2820
     cattaacgga tacgcatcca tagccaggcc gttgtcagat ctattgagag gcgattcaaa      2880
     gttcgaattc ggagaagctc agcaacttgc gttcgaaaac ttaaagtcag ctctcataag      2940
     tgaaccagta ctgaagttat acaacccgaa tttgccgaca gaaattcaca cagatgcgtc      3000
     caagtacggc tttggcgcag tcttattgca aaaggatcat gaggatagtg ctttccatcc      3060
     tgttcagtat atgagtcgta aaacatctcc ttttgaagaa aaatatgatt catacgagct      3120
     agaagtattg gccattatag gagctctagt caagtggcgt gtttatgttt taggcatgaa      3180
     gtttactatc gtaactgact gtaacgcgtt caagatgaca atgaacaaga aggaagttcc      3240
     actccgagta gctcgttggg ccttatactt gcaggacttc gactacaaga tcgagcatcg      3300
     ttcagggacg aaaatgaagc atgctgatgc attaagtaga gtctcgtgtt actatttgtc      3360
     cgattcaatt actcatcgct taaaggaagc acagatcaac gacgagtgga caaaagcagt      3420
     aaggagtctt ctagaaaagg atgcatacca ggacttttat attcagaatg atgtgctctt      3480
     taaagacccg aaccgtgagt tagtagtagt accttcgtct atggagaatg agattattca      3540
     gatcgctcat aaccaaggac acttttctgc caaaaagacg caggaccttg ttagaaaagt      3600
     cgtactttat tccaaagctg aaagtaaaat ctgagaaagt cgttgaaagc tgcatcagat      3660
     gcataatcgt aaatgcaaag gcaggcaaga aggaaggatt tctaacttca attgacaaag      3720
     gcgataaacc cttcataacg tatcacgtcg accacgtcgg acccatggag atgacagcaa      3780
     agcgctacaa tcatattttt gtcgtagtgg atggtttttc taagtacgtt tggctgcacc      3840
     cgactcgtag cactggtgct gaggaagttt tgagctgtct agataagcaa gccgtacatt      3900
     ttggaaatcc gtatcgtata gtgtcggaca gaggcacagc tttcacatcc gcagccttta      3960
     aggagtattg tgaatcacac aacattcaac acctgattat agcgacaggt gtaccacgcg      4020
     gaaatggcca ggttgaaagg attcataagc tcgtcgtgcc aatgcttgca aagttaagct      4080
     acgaaagtcc agttgcttgg tataaatacg tgggacaagt tcagcagatc attaacagca      4140
     ctgagccaag aagcacaaag atcacgccat tcaaacttct aactggagtt gagatgcggt      4200
     tagccggctg taatgaatta aaggacttga tgcaggagtt tgcgattaag gaactggatg      4260
     aagatcgaga aaagtaccgt gcagaagctc gagagaacat cagaaaactt caagaggaaa      4320
     acaagaaagc ttttgatatg aaacgtaaac aagaacgaat ttataagatc aatgatgtgg      4380
     tagcgatcwa aagaactcag tacggagtcg ggctaaagct taagggaaag tttctagggc      4440
     cgtataagat agtcgcagtt aaggatcatg ggcggtatga agtagaacgc ataggagata      4500
     ccgagggtcc atttagaacc tcaacagttt cggagtatat gaagccatgg tcacgtccat      4560
     tcgaggcgaa tgaacagtca ggagggccga a                                     4591
//
ID   Gypsy-11_DFi-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DFi_;
KW   Gypsy-11_DFi-I; Gypsy-11_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-251
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 910-910 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 251 BP; 87 A; 41 C; 47 G; 76 T; 0 other;
     tgtgggattt gaatcaggcg ggcttcctcc acggcacact cgaagcgggt tgagctatat        60
     ggcaactctt aattaatata cttataatcg atacttttaa gatcaccgat tcctgtggaa       120
     tgaagcagag tcgtcgttga gcattgaaag agaaaagatc aataattttg ttaacagtta       180
     atctaagcac tttttgttaa aatcaaaacc gaaaattaaa ttaattgtat gcgaataaat       240
     aatatcctac a                                                            251
//
ID   Gypsy-11_DHyd-I repbase;    DNA;    INV; 5964 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-5964
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2396-2396 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           777..2318
FT                 /product="Gypsy-11_DHyd-I_1p"
FT                 /translation="MANPNNLLRPAVLNTVDTDEFPTSAPTNANNDEYNQR
FT                 QQQRTASRQTMNQNYSSGETNSIENYIDRIINDRLATILSNMSGNSNASDF
FT                 AEAAAYSIDPDSRGNTADLDRVPDIVKGMREFSGDPAEFSSWKKGVDRILE
FT                 AYSSIKGSPKYFGILQTIRSKITQHADQVLDSYNMPLNWEAIARCLTLHFA
FT                 DKRDLSTLEYQLTTMIQNGQQTVEEFYQNIYKHLSLILNKVSCMNLDRQTE
FT                 VVMTKSYRDRALDAFIRGLRGDLPRLLGVKEPTDLPQALHLCLKLENQTYR
FT                 ITHANNRQQNSKFRNIDQNPIPAPRRFIPAPSNNPTYILPTYLPSQNPPPI
FT                 PPRRLISQPRPFYSYNQVQPVQFQRPPNQFGRQQQYWPQPTQTQPIAPARP
FT                 TAVKPAEPMDVDRSMQTKMVNYMNRPQFEIGKRPTFPINQDGKRQRLFNTE
FT                 GAECQGQNEQGYAEAYATMTDYERYEQAMIEINNQEEYDMSLAGYIEKANA
FT                 NSEPETTQYSNTDLNFLE"
FT   CDS           2252..5440
FT                 /product="Gypsy-11_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="ESERKQRTRNHTILQYRLEFFRMSDSSLPYFECRVGG
FT                 HKIFKILIDTGSNRNYIQPKHVTNPKPNETPFKAITVGGSIEITHHKLANL
FT                 FNYPECNIKFFLLPTLKSFDAILGNDSLKDLEAVIDVANKVMTIKGEKKIQ
FT                 IKEKKYEAVNTIIPRTEHLDDRQKLDLDQLILKYPNLFADPNEKLTYATNV
FT                 EAEIRTSTDSPIYSKFYQYPMSLKDEVNSQVQELLDNGIIRPSRSPYNSPV
FT                 WIVPKKLDASGERKFRMVIDYRKLNKATIADKYPIPEINEVLAQLGNNKLF
FT                 SVLDLKSGFHQIPLKTSDIPKTAFSVNNGKYEFTRLPFGLKNAPSIFQRAL
FT                 DDILREHIGKICYIYIDDIIIFSKDRESHTKNLQTIFQTLQDANMKCQLDK
FT                 CEFYKNKVEFLGFVISGQGIETNPNKVLAIANYPQPRTLKDLRAFLGLAGY
FT                 YRRFIRDFAKLAKPLSSLLRGEDGRVSKNNSKKKIINMNQEAIEAFNKVKN
FT                 SLVSDEVILQFPDFNKEFQLTTDASDFAIGAVLSQGDRPISFLSRTLSKAE
FT                 ENYATNEKEMLAIIWALKALRNYLYGRSKVKIYTDHQPLTYSLSSWNGNSR
FT                 VKRWKAYLEEYNYELLYKPGKSNVVADALSRPSQIYSVASTQHSAESSADN
FT                 LIPSIEVPINAFKNQIFIKKNDLTSYNFDIPFPTFHRHTIQQPNYNEKDIL
FT                 DILKKYLNPSVLNGIITSEDIMLVIQKIYPLHFKNYKIRFTSLHVKDILTD
FT                 IEQEEEILKEHSRAHRGIAENKAQLSEKCYFPKMKEKITNLVKQCRICKEQ
FT                 KYDRHPTNPELKETPIPQYPGQIIHVDIYSTEKVLVLTALDKFSKLAQAKI
FT                 IKSKAIQDIKEPLHDLVFYYGVPKCIVMDNEKSLNSETITFMLKDQLDIQI
FT                 YKAPPYKSSVNGQVERFHSTLSEIMRCLKNNRKQNNFKELLDRAVYEYNSS
FT                 IHSVTNKRPLDVFFGRNITTDPECYERSRQNNIERIRTKQATDLEHHNKQR
FT                 KKLQDYNIGQEIFVRQNTRLGSKLTARYKKETVKEDRGTTILTESGKIVHK
FT                 SNIKNQ"
XX
SQ   Sequence 5964 BP; 2335 A; 1223 C; 1018 G; 1388 T; 0 other;
     ggcgcccgag cagggaccga tcgcgataca acagtgcaaa aagtcatcta agtacgcgaa        60
     tcggccacga ataaaccacg acagaacaaa acgtttctaa gtgcgtttaa tcacgaaaag       120
     gtcaaaaccg gatagcagcc acagtttgtg caacgtgggc tcacgctttg tatgatccgt       180
     tcgcagagca cgtcttggat taacgtatga acagccgaac cgcgagtagg ggaaaccaaa       240
     agggataaat tcggcatcat cggagatgga gcacgcacca acaatagttt tgtaagataa       300
     agaaaattag tgattaagtt aaagtaaatt gaaaaaaaat taaaaaaaaa aaaaaaaaaa       360
     aaaaaaaaaa aaaaaacgaa tcaaatcaaa aactagttag aaatataagt taagaaaatt       420
     aataagtaaa attactgatt aagttaaggt aaattggaaa aaatatttaa gtgaaataat       480
     taatacaaaa ttaaaattaa aaaaagaaac agcgaatcaa atcaaaaact agttacaaat       540
     ataagcttag tgtgccgtgc ttgtagctgc gcagtgtaac ctaaaacaaa aaaataagaa       600
     acagtagaac acaaacgcgc tgcaaaaact ttcacaattt tatataatac ataaaattca       660
     ttttgctttt acaattttac actacaacat ttttttttaa atattccaag catttcttca       720
     atatcacact ctatctataa acatattcac ttttacttac aaaaaattaa ctaaccatgg       780
     ccaacccgaa taatctatta cgacccgcag tacttaatac agttgacacg gacgaatttc       840
     cgacttcagc accaaccaac gccaataacg acgaatacaa ccagagacag cagcaacgaa       900
     cagcaagtag acagacgatg aatcaaaatt atagtagtgg tgaaacaaat tccatcgaaa       960
     actatataga cagaataatc aacgatagat tggcaacaat tttaagcaac atgagtggta      1020
     acagcaatgc tagcgatttt gctgaggcag ccgcctatag catagatccc gactctagag      1080
     gcaatactgc agacttagac cgcgtaccgg acatagtgaa aggaatgaga gaattttcag      1140
     gagatccagc tgagtttagc tcctggaaaa agggggtaga taggattcta gaggcgtact      1200
     ctagtattaa agggtcacct aaatactttg gtatcttaca aactatccgt agtaaaataa      1260
     cccaacatgc agaccaagta ctagactctt acaatatgcc cctaaactgg gaggcaattg      1320
     ctcgatgcct tactctacac tttgcggaca aacgcgactt aagtacattg gagtaccaac      1380
     taaccactat gatacaaaac ggacaacaga cagttgagga attttaccaa aatatttaca      1440
     aacacctatc tttaatcctc aacaaggtta gttgtatgaa tttagaccga caaactgagg      1500
     ttgttatgac aaaatcatat agggataggg cattagatgc atttataaga ggcctacgtg      1560
     gtgatttacc acgccttctc ggcgtcaagg aaccaactga cctgccgcaa gctttgcatt      1620
     tgtgtctgaa attagaaaat caaacctata ggataaccca cgcaaacaat agacagcaaa      1680
     actcgaaatt cagaaacata gaccaaaacc caattccggc acctcgtagg ttcataccgg      1740
     ctccatcaaa caacccaact tacatacttc caacatattt accatctcag aatccacctc      1800
     caattccgcc tcgtagacta atatcacaac ccagaccatt ctacagctat aaccaggtac      1860
     agcccgttca atttcaaaga ccaccaaacc aatttggtcg ccaacaacaa tattggccgc      1920
     aacccaccca gacccaacca atagccccag cccgtccgac tgctgtcaag ccagcagaac      1980
     caatggacgt cgaccgtagt atgcaaacta agatggtcaa ctatatgaac agacctcagt      2040
     ttgagatcgg taagaggcca acattcccca taaaccaaga cgggaaaaga caaagactct      2100
     ttaacactga gggagcagaa tgtcagggac aaaatgaaca aggctatgcc gaggcttacg      2160
     ccaccatgac tgattatgaa agatacgagc aggcaatgat agaaatcaac aaccaggagg      2220
     aatatgacat gagcttggca gggtatattg agaaagcgaa cgcaaacagc gaaccagaaa      2280
     ccacacaata ctccaataca gacttgaatt ttttagaatg agcgactcct cgctacccta      2340
     tttcgaatgt cgagtggggg gtcacaaaat tttcaaaatt cttatcgata ctggttcaaa      2400
     cagaaactat atacagccga agcatgttac aaatccaaaa cctaacgaaa caccttttaa      2460
     agcaataact gtaggaggta gtattgaaat aacacaccac aaacttgcca atttattcaa      2520
     ttatccagaa tgtaacatta agttttttct tttaccaact ctaaaatcat ttgatgccat      2580
     tcttggcaac gatagcctta aagatttaga agcagtaatc gacgtagcaa acaaagtaat      2640
     gacaattaaa ggagaaaaaa agatacagat aaaagaaaaa aaatacgaag cagttaacac      2700
     aatcataccc aggacggaac atttagacga cagacaaaaa ctagacctcg accaattaat      2760
     cctgaaatat cctaatcttt ttgcggaccc aaacgaaaaa ttaacctacg ctacgaatgt      2820
     tgaagcagaa ataagaacct ctaccgattc cccaatatat tcaaaatttt accaatatcc      2880
     gatgtccctg aaagatgaag tgaatagtca agtccaagag ctgctagata atggcattat      2940
     tcgaccttca cggtcacctt acaactcacc agtatggata gttcctaaga aactagatgc      3000
     atccggtgaa aggaaatttc gaatggtaat agactataga aaactcaata aagccactat      3060
     agcagacaaa taccccatcc ccgagattaa cgaggtatta gcccaactcg gaaataataa      3120
     actcttttct gtcctcgacc ttaagagtgg atttcatcaa attccgctaa aaacgtctga      3180
     tataccgaaa acagccttct ccgtgaacaa cgggaaatac gagtttacac gactcccatt      3240
     cggcttaaaa aacgcaccat ctattttcca acgtgcgctc gatgatattc tcagagaaca      3300
     catcgggaaa atctgttata tttacatcga cgatattatt atttttagca aggataggga      3360
     atcacataca aaaaatcttc aaacaatttt ccaaactctg caagatgcca acatgaaatg      3420
     ccaattggac aaatgcgagt tttacaaaaa caaagtagaa tttttagggt tcgttatttc      3480
     tggccaaggt atcgaaacaa acccaaacaa agtactagca atagccaatt acccacaacc      3540
     cagaacttta aaggatttaa gagcattttt aggactagca gggtactata gaaggttcat      3600
     aagggatttt gctaagttag ctaaacccct tagctccctt ttaagagggg aagatggacg      3660
     agtgtccaaa aacaattcaa agaaaaaaat tattaatatg aaccaagagg caatagaagc      3720
     ttttaacaaa gtcaagaact cactagtgtc cgatgaagtt attcttcaat tccctgattt      3780
     caacaaggaa ttccaactaa caacagatgc ctccgatttc gccataggcg cagtactatc      3840
     ccaaggtgac agaccaattt cctttctctc tagaacgctt tccaaagcag aagaaaatta      3900
     cgccactaac gagaaagaaa tgttagccat aatttgggca ttaaaagccc tcagaaacta      3960
     cctatacggt agatcaaaag ttaaaatcta cactgatcac caacctctta cttattcgct      4020
     tagtagctgg aatggaaatt ccagagtaaa aagatggaaa gcatacctgg aggaatacaa      4080
     ttacgaattg ctgtacaagc cgggtaaaag taacgtagtc gcagatgcgt tatcaagacc      4140
     tagccagatc tattcagtcg cgtcaacaca gcatagtgcg gaaagttcag cagataattt      4200
     aattcccagc atagaagtcc cgattaatgc attcaaaaat caaatcttca tcaagaaaaa      4260
     tgacttaacc agctacaatt tcgatatccc attcccaaca ttccataggc atacgattca      4320
     acaaccaaac tataacgaaa aggacatact ggacatctta aaaaaatatt taaatccatc      4380
     agttttaaac ggaatcataa catcagaaga tataatgtta gtaatacaaa agatctatcc      4440
     tttacacttc aaaaactata aaatcagatt cacgtcatta catgtaaaag acattttaac      4500
     agacatcgaa caggaagaag aaatacttaa agaacacagt agggcccatc gtggcatagc      4560
     agaaaataag gcacaacttt cggaaaaatg ttacttcccc aaaatgaagg agaaaatcac      4620
     gaatcttgtc aaacagtgca ggatatgtaa agaacaaaag tacgatagac accctacgaa      4680
     cccagaacta aaagaaaccc ctattccaca gtatccagga caaatcatcc atgtagacat      4740
     ttactcaacg gaaaaagtat tggtactaac agcactagat aaattctcaa aattagctca      4800
     ggccaaaatt atcaaatcaa aagctatcca ggatattaaa gaaccattac acgatttagt      4860
     attctattac ggagtaccaa agtgtattgt gatggacaac gaaaagtcgc tgaattcgga      4920
     aaccataacc ttcatgctta aggatcagtt agatatccaa atctataaag ctccccctta      4980
     caaaagttca gttaacggac aagtggaaag attccattcc accttatccg aaataatgag      5040
     gtgcttaaaa aataaccgga agcagaacaa ttttaaggaa ctactggata gagcagtata      5100
     tgagtataac tcatcgatac attcagttac caataagaga cctttggatg tattttttgg      5160
     aaggaatatt acaacagacc cggaatgtta cgaaagatcc agacagaaca acatagaaag      5220
     aatcagaaca aaacaggcaa cagacttgga gcatcataac aaacaacgta aaaaattaca      5280
     agactacaat atcggtcagg aaatctttgt cagacaaaac acacgcttag ggtctaagct      5340
     aacagctagg tataagaaag agacggtgaa ggaagacagg ggtactacta tactaactga      5400
     atcgggaaaa atagtccata aaagtaatat aaaaaaccaa tgattctttt ccctcaaatg      5460
     gctgacgatc atacgagtca gttcatgttt acgtcaaaac ctaactcatt atccatagag      5520
     aaaatgcttg agttcgctaa cgttctatct tacgcaatat aacgagataa ttcacctaaa      5580
     gcaaaatgaa tttaaaaaaa aaaaaaaaaa aaaaaagaaa aaaataaata aataaataaa      5640
     taaaaataaa aataaaaata aaaaaaaatt tgtacgaaat atcgaatagt tgtaagccat      5700
     tattaatatt accgtatgcc ttaagaaaag aattgttaat ttaagcgata ccaattgtaa      5760
     tcaaagctag ttcagggtac caggacttac tgcaactata gcaacacgaa actacgaaac      5820
     tcatcagagg gactcagcag atcgacaata ccgaatcgac catccgctgc tggctacctc      5880
     ggaagacaag ggattgccta tcgtcaatcg aacacggtca tttgcgatat caacttgggg      5940
     acaagtcgga tttaaagagg gaag                                             5964
//
ID   Gypsy-11_DHyd-LTR repbase;    DNA;    INV; 554 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-554
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2406-2406 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs, mostly TATA.
XX
SQ   Sequence 554 BP; 176 A; 135 C; 119 G; 124 T; 0 other;
     agttaacaac aaagttgtta cacaattccg cagcctggaa tacccaacaa agttggcgcg        60
     catctctatc tctgaggtca agaatcgctg caatagcgcg agagtaccga agttcagcag       120
     cttgcaattg ctaacaacaa atttggcgcg caactctctc ttcggtcaag aaccgctgca       180
     atagcgcgaa agtaccgaag ctcagcagct tgcaattgct aacaacaaat ttggcgcgca       240
     actctctctt cggtcaagaa ccgctgcaat agcgcgaaag taccgaagct cagcagcttg       300
     caattgctaa caacaaattt ggcgcgcaac tctctcttcg atcaagaacc gctgcaatag       360
     cgcgaaagta ccgaagttca gcagcgggtc gctgaatgca gacgatgtcg cgagagtcat       420
     cagcagcgct gccgccatca actcggactt tagctagcta gggtacaata attttaagga       480
     aaaattagtc taaaatctgg gatcgacctg atcacatgtg aaaataaaaa taagaaaaat       540
     tatttatttt aact                                                         554
//
ID   Gypsy-11_DMel-I repbase;    DNA;    INV; 7426 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7426
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1044-1044 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1221..2366
FT                 /product="Gypsy-11_DMel-I_1p"
FT                 /translation="MSTIGRVKKNFPNTRSKLRASTSLPDIREDPNETQLQ
FT                 VAGSVPSLSSMTSTQSSSGSNQATLVPSQAEIFSSLRIPDPIRFLPPYDGN
FT                 PNKLHDFINNVEEILISIRDTDKTPYGRTLLRAIRQKLEGKAEDAIHTAGA
FT                 GLNWDEIKDALILFCADKRDEEALMAELYGLAHAQLPIQILFKKICEIKTA
FT                 LFKLLDTLDLEPILIRSKKKFFGETCLNIFTTSIKGPLGLAVRSMRPTNLQ
FT                 EAFQWAMKERDIYFQENKRKQETRVTEYKRQTDIRGYQGNRRNNYDPRYNE
FT                 RKRDHKQYSSNDRDYSPRRKNNMKAIMPKDNQNDRSYEPRKFENLNSNKSR
FT                 GSIHNIEQDSEKYTQNRQLHNIDEDSNFQQSASRNRQDT"
FT   CDS           join(6196..7053,7002..7424)
FT                 /product="Gypsy-11_DMel-I_3p"
FT                 /translation="MDAKXAQTIGEKFNVVKENENQITERINKQTLFNKEX
FT                 ILRFENITKHXNQXQLTINNFIKNYNNNIYKTLNDKHKEIQILPYITRINF
FT                 NIDVLNNHISNIAESILLTKLNLIPKFILSEKKIKSINEFIIKQNVKXESD
FT                 EHSYRLLALETYINDSYIIFHVKIPIFKTQMYTLTHIVPLPLNKTKFLIVP
FT                 NYILHDKDKKILYVEDKCPKIHRTYICEGARTQTTLINIHCLDGILRNQTA
FT                 TCDVKDAGQQEMIKEIEQRHIFIHNTINTQYHVLTQTLYNQWISNYPISRP
FT                 HPDPLQSMDQQLTFNNCTVKVNGLTYDDTVMEFDQETKISVKSFEQMNIKN
FT                 TFEDIXLHKLHLQALSSQDDIITMKTSATSHLFTIYILFVFLTICTILTLM
FT                 LKRRSTIITPVEIPLNYVPAIPSMWPSLHSRGG"
FT   CDS           join(2458..2973,2977..3720,3675..4388,4392..4565,
FT                 4569..4799,4751..5911)
FT                 /product="Gypsy-11_DMel-I_2p"
FT                 /translation="MSFINPELISHTDRINLSDPISIKTALNVHQVFQKAI
FT                 IPVFTEFSNNTRYQLILFKFHPFFDGLIAMDILQKLGATVNIPKAILKTQY
FT                 FNIKLHSENNTTSELHVLDEVSKNIVKLPVTIDNGEFWYETTKISDNLLIS
FT                 GGLYQAIDNSSFMGVVNVSQDKQKLCLDAKLQVRYAGNDFIEINAISEFSN
FT                 NTPIDRTNIITKLKTDNLNAEEFTALKNLCKRFPKLFHQEGDNLTFTNLVK
FT                 HKIQTTDEIPIHSKPFRYSPVERQEVQRQITNMLEQDIIRHSHSPWGAPIF
FT                 LVSKKPDASGNKKWRLVIDYRKLNEKTVKDKYPMPNINDVLDRIGRAKYFT
FT                 ALDLASGYHQVEMDPKDISKTAFSAIEGHFEFVRMPFGLTLQRVMDNILAD
FT                 LNGKCCLIYLDDIIIFQRHSKNMLMIRYNNFSASLQKHVNDLKLVFDRLSR
FT                 ANLKLQPEKFEFFKKEIVYLGHVVTNSGIKPNPKKLIAIKAFPMPETQKQI
FT                 KSFLGLLGYHRKFMKDFATMTKPLIQQLKGKATVKINEEFIRAFETCKTLL
FT                 CNDPILQYPDFNKPFILTPDASNFAIGAVLSQGTLNQDKPVSFASRTLSDR
FT                 ETNYSTVEKEMLAIIWATKHFRPYLYGQKFKIVTGHRPLTWLMNFKEPNSK
FT                 LVRWKLQLFYDYEVVYKKGSQNVVADALSRLTGEINTNSVLALTNSATPNA
FT                 IPISNKPLNEFNIQIIKKKTTTKPEKLTSMQFKNKIRRTIAETYYDKQSMA
FT                 NILKQILKPNKTCAIFAPDEIFEIIKDTLKEYFFYLPHRTRSRHLKRIFFL
FT                 PTAPYEVIRCTTLLQDITNTYEQEKEIRKYHLANNHRGIDETVAHLRRSIY
FT                 FPLLKTKVTHIINDCDVCQTLKYDRQQQKIEFSETETPSHPMQIIHTDIYM
FT                 INGKTIIDKFKTIIDKFSKFSAGYTIMTRDSLNVVKSMRNFLSTFGIPKKL
FT                 ICEQGSQFANKLFKDFCAQYNIILHFTSFQQSSSNFPVERLHSSLTEIYRI
FT                 ILNKRKTEKLSCDHEDIFVETLTTYNNSIHSTTKYTPFEIFHGKPHLLTQG
FT                 INPNNEHDYLQKLNEFRNTIYPDIKENMENKMKDTIAKSNEDRNPPIALEV
FT                 GKTVFRKENRRNKLTPRFKKHTVKGDKGLYHTKTKIFIKKKLRKEQNSNIG
FT                 HILQILLRNGTSYQNSNTGGV"
XX
SQ   Sequence 7426 BP; 2956 A; 1511 C; 1156 G; 1797 T; 6 other;
     ggcgcagtcg aattaagaac ctacaacaag gacttcagga tgcaccatat cattatccta        60
     gtattgtaag taattattaa gtgaaatagt gatgtgaaag ttgtgtaaga atgagaagaa       120
     aaaaaaaaat aaataataaa ttttaatgaa aaagaatgga taaaagaata aaaaaaataa       180
     ataagtaaaa ataaataaaa taaaaataag aatacaaaaa tatatataca agtacagttc       240
     atgccaatct agcatcaggc catacgccca cgcttcgcta aaagtttgct actaccgagc       300
     aacaggttcg ctgcaacctt ctggtcgcaa caacatgttc agtgtagcat acgaaaagta       360
     gcgacgccaa cggttggcac acaaccaacg gcaacggttc catcgacatg ctggacgcga       420
     accaatccgc tgtgcgagcc aagcattgtt tacaatataa aatagttcaa tgagcacaaa       480
     gccaacatgg caaattaagt tcaaaaaaaa agaacaaaaa gaaatctata tcaaaaaaaa       540
     cttattaaac aaataataac aaatacaaat acaatacaaa atagtgcaat gagcacaaag       600
     ccaacatggc aaattaagtt aaaaaaaaaa aaaaacaagc aaacgtgatt tacatctagc       660
     gctggacgcg aatcatttca tggttgaaca ggtcactgag ggtagtcaaa ttatactttg       720
     acatgccgga cgcaaccgaa ctgattcgaa taggtcactg aagcgcaatg tgatgaaaat       780
     tcacaaataa aaaaaaaaat ataatacata taaaaaaaaa agaaaatata taactaaata       840
     aaaattatat aagggaacaa atatagattc cctatttttg tacaattctc attcttacct       900
     cacaaccgaa gctaactatt tacaataaaa aaaagaagca ataatattgc caaaataatt       960
     acagatttta aaaacacact agatcaagga atagaagtct acactcagca aatacaacaa      1020
     caacacatat attttttaaa tcgttaagca aaacacatat ttttaagatc tttctaaaaa      1080
     cgacttatac attttaaggt cccttttacc aataacatcg ttaaacttcg ttaaaaaaaa      1140
     ttcaacacac acattttgct gtttgctgca agaccctttg catcttgatt aggcagtggc      1200
     aggtagtagc ctttccctaa atgtctacta ttggcagagt aaaaaaaaat tttccaaaca      1260
     ctaggagcaa gcttagagct agtaccagct tacctgatat aagggaagac ccaaacgaaa      1320
     ctcaactcca ggtagcagga agtgtacctt cactatcttc aatgacttcg actcagagct      1380
     cttcaggttc taaccaagcc acgttagtgc ctagccaggc agagatcttt tcgtctctaa      1440
     gaattccaga cccaattcgt ttcctgccac cttatgatgg caatccaaat aaactacacg      1500
     acttcattaa taacgtggaa gaaattctaa tttcaattag ggacacagac aaaacaccat      1560
     acggacgcac cctcttgagg gcgattagac agaaactgga gggcaaagcc gaggatgcga      1620
     ttcatacagc aggagctggt cttaattggg atgaaattaa agacgcacta attttgttct      1680
     gtgccgacaa gcgagacgag gaagccctaa tggccgaatt atacggtctc gctcacgctc      1740
     aactcccaat ccagattttg ttcaagaaaa tctgtgaaat taagacagct cttttcaaac      1800
     ttttagatac cctagacctc gaaccgatac taataagatc aaagaagaag ttcttcggag      1860
     aaacctgtct taatattttc actaccagca ttaaaggccc acttggtcta gcggtaaggt      1920
     ctatgagacc taccaacctc caagaagcct ttcagtgggc catgaaagaa agagacattt      1980
     atttccagga gaacaaaaga aaacaagaaa ctagagtgac agaatataaa agacaaacgg      2040
     acattcgtgg gtatcagggc aatcgtagga ataactatga cccaagatat aacgaaagaa      2100
     agagggacca taaacaatat tcctcaaatg acagagatta ttccccacgt agaaaaaata      2160
     atatgaaggc aataatgcca aaagacaatc aaaatgaccg ttcatacgaa cctaggaaat      2220
     tcgaaaatct gaactccaat aaaagcaggg gttctattca taatatagaa caagattctg      2280
     agaaatacac tcaaaatcgc caactgcaca atatagacga ggactcaaat tttcaacaaa      2340
     gtgcctcgag aaacagacag gatacttaat aaagaaacaa cccgggtccc cctaccatac      2400
     attttaatac acctcaaatc taatccgcta aaattcctaa tagacacagg ggcgaccatg      2460
     tcattcatca acccagaatt gatatcccac acagacagaa ttaacttgtc cgacccaatt      2520
     tcaattaaaa ccgcacttaa cgtgcaccaa gtttttcaaa aagcaataat acccgtattt      2580
     acagaatttt ctaataacac gcgttatcaa ctaatactat tcaaatttca cccattcttt      2640
     gatgggttaa tcgcaatgga cattttgcaa aagttaggag caacagttaa cattccgaaa      2700
     gcaatcctaa aaactcaata tttcaatatt aaattacact cggaaaataa cacaacctca      2760
     gaactccacg tcttagacga agtttctaaa aacatagtta agctaccagt caccatcgat      2820
     aacggtgaat tctggtatga aactacaaaa atctccgaca atctactcat atcaggaggt      2880
     ctataccaag ctatagacaa ctccagtttt atgggagtag tcaacgtttc tcaagacaaa      2940
     cagaaattgt gtcttgacgc aaaactacag gtctagagat atgccggaaa cgattttatc      3000
     gaaataaatg ctatatccga gtttagcaac aacaccccca tagacagaac gaatataatt      3060
     acaaaactaa agacagacaa tttaaacgca gaagaattta ctgcattaaa gaatctctgt      3120
     aaaaggtttc caaaattgtt ccaccaagag ggggacaact tgacttttac caaccttgtt      3180
     aagcacaaaa tacagactac agacgaaatt ccaatacatt caaagccatt ccggtatagt      3240
     ccagtagaaa gacaggaagt tcaaagacag atcaccaaca tgttagaaca agacattatc      3300
     aggcacagcc actctccatg gggcgcaccc atttttctgg tgtcaaaaaa acctgacgct      3360
     tcaggtaaca aaaaatggag attggtaata gactatagaa agttaaacga gaaaaccgtt      3420
     aaagacaaat accctatgcc aaatatcaac gatgtcctag acagaattgg tagagctaag      3480
     tatttcacag ctctagattt ggcaagcgga tatcaccaag tagaaatgga ccccaaagat      3540
     atcagtaaaa cagctttttc cgcaattgaa ggccatttcg agtttgtgag aatgccattc      3600
     ggtctcactc tccaaagagt gatggataac atcctagcag acctgaacgg taaatgctgt      3660
     cttatatatc ttgacgatat aataattttt cagcgtcact ccaaaaacat gttaatgatc      3720
     tgaagctagt atttgacaga ctaagtagag caaatttgaa gctccaaccg gagaaattcg      3780
     agtttttcaa aaaggaaatt gtgtacctgg gtcatgtagt caccaattcg ggcataaagc      3840
     ccaaccccaa aaaactgatt gctattaaag cttttcccat gcctgaaaca caaaaacaaa      3900
     ttaaatcctt tttaggatta cttggctatc ataggaagtt catgaaggat ttcgcaacaa      3960
     tgacgaaacc actgatacaa cagttaaagg gcaaagctac tgtaaaaata aatgaagaat      4020
     ttattagggc attcgaaacg tgcaaaacgt tactttgcaa cgacccgatc ctccagtacc      4080
     cagatttcaa caagcctttt atacttaccc cagacgctag caatttcgct atcggggcag      4140
     tcttgtccca aggtactctc aaccaagaca agcccgtatc ctttgctagc cgaacgctat      4200
     cagatagaga aacaaattat tcgaccgtag aaaaggaaat gttggccata atttgggcca      4260
     caaaacactt tcgcccctat ctgtacgggc aaaaattcaa aatagtcaca ggccacaggc      4320
     cacttacttg gctcatgaat tttaaagaac caaattcaaa actagttaga tggaaacttc      4380
     aattattcta atatgactac gaagtggtct acaaaaaggg gtctcaaaac gtggtggccg      4440
     acgctcttag tcggttaact ggtgaaatta acactaattc tgtacttgcc ctcacaaaca      4500
     gcgctacccc taacgcaatt ccgatttcca ataaaccact aaacgaattt aacatacaaa      4560
     taatttaaaa aaaaaaaacc acaactaaac cagaaaaatt gacctctatg caatttaaga      4620
     acaaaataag aagaaccata gctgagactt attatgataa acaaagcatg gctaatattc      4680
     taaaacaaat tctaaaacct aacaaaactt gtgctatttt tgcaccggac gaaatcttcg      4740
     aaattattaa agacacctta aaagaatatt ttttctacct accgcaccgt acgaggtcat      4800
     aagatgcacc accttattac aagatataac taatacatac gaacaggaaa aagaaatacg      4860
     aaaatatcat ttggcaaaca atcacagagg aatagacgaa acagtagccc acttaagaag      4920
     atccatatat ttcccattat taaaaacaaa agtaacccat attattaatg attgcgatgt      4980
     ctgtcaaaca cttaaatacg acaggcaaca gcaaaagatc gaattttcgg aaaccgaaac      5040
     cccatcacac cccatgcaaa ttatacatac ggacatttat atgattaatg gcaagaccat      5100
     cattgacaaa ttcaaaacga tcattgacaa attttcaaaa ttctctgcgg gatatacaat      5160
     catgactagg gatagcttaa acgtagtcaa atcaatgaga aattttctat caacctttgg      5220
     aattccaaag aaactcattt gcgaacaagg ttcgcagttt gcaaacaaac tttttaagga      5280
     cttttgtgca caatataaca tcatattgca cttcacgtcg ttccaacaat cttcgagtaa      5340
     tttcccggta gaaagactcc attcttccct aacagaaata tacaggataa tactaaataa      5400
     aagaaaaaca gaaaaactct cttgtgacca cgaagacatt tttgtcgaaa ccctaactac      5460
     atataacaac tcaattcact caacgacaaa gtacaccccc tttgagatat ttcacggaaa      5520
     accccactta ttaacacagg ggatcaatcc gaataacgaa cacgattatc ttcaaaaact      5580
     taacgaattc cgcaatacta tctaccctga cataaaagaa aatatggaaa ataaaatgaa      5640
     agacacaatt gcaaaaagca atgaagatag aaacccacca attgctctcg aagtaggtaa      5700
     aacagttttt agaaaggaaa ataggagaaa taaattgaca ccacgattca agaaacacac      5760
     agttaaggga gacaagggct tatatcacac aaagaccaaa atattcataa agaaaaaatt      5820
     aagaaaagaa caaaatagta atattggtca tattttacag attttgctgc gtaacggcac      5880
     aagttatcaa aattcaaaca ctggaggagt atgacaaaat cgcaaatata gacctgggag      5940
     acacaagagt catacagtca tacaaacatt tactccacaa aattaataca caggaccttt      6000
     tagaaaatat tatgaacttt gaacagcact taataagcta gaagaagtaa gagtttcaga      6060
     tgaaattata aacggcttaa gagcccaaat agatcagcta aaaaccaaaa aaaaaaacac      6120
     cttattaccc aaagaaagaa aaaaaaaggt attgtaaacg gtcttggtag cataataaaa      6180
     gtagtaactg gaaatatgga cgctaaakac gcccaaacta ttggcgaaaa gtttaacgtt      6240
     gttaaagaaa atgaaaatca aataacagaa agaatcaaca aacaaacact atttaacaaa      6300
     gaagmtattc taaggtttga gaatataaca aaacacawta atcaagmgca actaacaatt      6360
     aacaatttta ttaagaatta caataacaac atttacaaga ctctgaatga taagcataaa      6420
     gaaatacaaa tactcccata tatcactaga attaatttca atatagatgt cttaaacaac      6480
     cacataagta acatagccga aagcatctta ttaactaagt taaatcttat acccaaattt      6540
     atattgtcag aaaagaagat aaaatctatc aacgaattta taataaaaca aaatgtcaaa      6600
     akagaatctg atgaacactc atacagattg ttggctctag aaacctatat taacgattcc      6660
     tacataatat ttcatgttaa aatacccata tttaagacac aaatgtatac actaacacac      6720
     attgtccctt taccattaaa caaaactaaa tttctaattg tacccaacta tatattacat      6780
     gataaggata agaaaatttt gtatgtagag gacaaatgcc ctaaaattca tcgaacatat      6840
     atatgcgaag gtgcgcggac acagaccacg ctaattaaca tccactgcct cgatggcata      6900
     ctccgaaacc aaacagcaac atgcgatgtc aaggacgctg gtcagcaaga gatgatcaag      6960
     gaaattgaac aacgtcacat cttcattcac aacacaatta atacccaata tcacgtcctc      7020
     acccagaccc tttacaatca atggatcagc aactaacatt caacaattgc acggtcaagg      7080
     ttaacggctt aacatatgac gatacagtga tggaattcga ccaagaaaca aaaatctccg      7140
     taaaatcatt cgagcagatg aatataaaaa acactttcga agacataaas ctgcacaaac      7200
     tccatctaca agccttatca agccaagatg acatcatcac catgaagact tcggctacaa      7260
     gtcacctctt cacaatttat atattattcg tattcctgac catatgcaca atattgaccc      7320
     tgatgttgaa aagaagaagc accattatca cccctgtgga aattccgtta aattacgttc      7380
     cggccattcc ttcgatgtgg ccgtcacttc attccagggg gggagg                     7426
//
ID   Gypsy-11_DMel-LTR repbase;    DNA;    INV; 382 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-382
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1038-1038 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
SQ   Sequence 382 BP; 117 A; 89 C; 73 G; 103 T; 0 other;
     agttaccgat atcgcagtac agagtatcca cgattcggta ccacccgcca agccgccaaa        60
     acagtcattg cccctatgag ctgattcgaa actgcaacta tgttgcaaaa tgcagacaca       120
     gcactttgac aggatgtgat tgcgacaatt ctcggttaag aaacaagaac cgccgcacca       180
     gcacttcgat atatacatgt tgccaacgaa ctctagaatt cttttgtaaa catttagctt       240
     agcttaagtt tggaaaataa aagcacagtt agttccattt tggacgacaa aaaactgaga       300
     ttgattttta ttcggcggag atcttcttaa tatatttctg ggcaacctct tccacacccg       360
     gtgtactgag acactggtat ct                                                382
//
ID   Gypsy-11_DMo-I repbase;    DNA;    INV; 6209 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6209
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6209 BP; 2391 A; 1329 C; 1084 G; 1405 T; 0 other;
     ggcgcccaac cgaaacgaac ccaaaaaaca aaaaaaaaaa aacgaaatta aaacttcgat        60
     taaaacaagc attcagtgag ataaataccc cacaagtgca aaaaaaaaac agcaagacaa       120
     ctaaaacgca taaccaaaac gaaaaaagaa aaaaagaaag cagcattaga cgaagcagta       180
     cgcagcgaag acacccacca cgaagcggct catcagcgaa gaaacacaca acatacagtc       240
     tactaacata atataagaac atgtgagtag agtgttcatt gcaaaaaaag aaattaagga       300
     gtaaaaacaa ataaaaatac aatttcaacc tttaaatatt aattattaat aacaaaaaac       360
     gcagcacgca aaattccctg tctttacttg ccctatgagt gatagtgaaa tacaagattt       420
     aataacaaat tttcgaaaaa tttacaacac agaaaattta aaaatggctt tgaattcaga       480
     tcaattaaaa gctatagtag aaggcgcagt cgcgagcgct ttagctgctc aaaaagatag       540
     ctttgataga aaattaaacg aaattgaaca acgtataaat tcagtacagg ttagcgcacc       600
     cgaggtagag actttcaagg aggcagaaat caaaataggt gttatgtgcc acgaaaccct       660
     tgacatcatg aagtccctcc cggactttga aggaaaaagc gaaacttatg tatcttggag       720
     aaaggctgcg catatcgcat acaaggtata tgagaaatac gatggtagct caaagcatta       780
     tcaagctttg ggaatattaa gaaacaaaat taagaacgct gctgatatgg tactctcttc       840
     tttcgacact cctctaaatt ttaaggccat tataaatcgg ttagatttca cgtactccga       900
     caaacgaccg atatacttaa ttgaacagga gatgtcaaca ctccgccaag gaaatttgac       960
     actactgcag tactacgacg aggtagaaaa gaaactgact ttacttataa ataagacaat      1020
     catgacctac gacaccaccg ttgcctcttc gctaaatgag aaatatagag cagacgccct      1080
     gcgagtattc atctcaggaa ccaggaaggc cttaagtgat gtcctattct cagctagacc      1140
     aattgatctt ccctctgcat tggcattggc tcaagaagtt gagtcaaatc atgaacgtta      1200
     tatgttcgcc acaaatttcg cccgcagtat agaagaaaaa gcgcagaaga tcgaacaaag      1260
     acagcaagtc agagacaaga ctctagctca agacccaaaa cacaaccaac caggaaaaag      1320
     cccacactac aaaagaccag aattctcacc acgacaagaa caggtagaac caatggacgt      1380
     tgactcatct tctcgcttca gacaggctac gcaacaccaa caaaacgcga ccttctcgaa      1440
     acagactcag tggccaaatc aacaacgacg cactcaatac gaaaactaca ataaccaggg      1500
     acaggcaaac aaacgaccaa acagcggtag cgcacggttc acaggaccga aacagcaaag      1560
     agttaaccac ctaggaacag aagatacaga atacgagcag gacaatagcg aataccaagc      1620
     gatcgcagaa accgagacag aagacgttga caatgaattg gacgaatacg accaggtcaa      1680
     ttttttagga ataaatccct gctcccgttc atagagagaa cgatagcagg gaaaaccata      1740
     aagttgctaa tagataccgg agcctcaaag aattacgtga gaccattaaa agaactaaaa      1800
     aatattacgc cggtagaaaa accctttcga ttaaaatcaa tccatggcca caacgtagtt      1860
     gacaagaaat gcataatgca cctttttaat accaagacaa catttttctt attaccaaac      1920
     ctcacgacat tcgatggtat aatcggactt gacctactaa accaaaccaa cgttttatta      1980
     gacttcaaaa ataagaaact aacaacaaac tatggttctg agaccattaa ctttctaaaa      2040
     tgcccagccg taaatttcac aagtgtcaaa gaaatagaag cccctcaggc tataacaacg      2100
     gaatttcaaa caatgctcaa agcccgagca ggagtatttg cggaaccaaa tgaagcgctt      2160
     ccgtataata caaatgtcat tgcaactatt agaacagagg acgagaatcc catttattca      2220
     aaattatatc catacccaat gggcgtatca gaattcgtaa acacagaaac tcaagatctg      2280
     ttagaaaacg gtataatacg tccgtcccag tcaccataca ataaccccgt gtgggttgta      2340
     gataaaaaag gtaccgacga gcagggaaga aaaaagaaac gtttagttat agacttcaga      2400
     aaactaaaca aaaagacaat agatgacaaa taccccattc ccaatatagc ctccatttta      2460
     tccaacttag gcacagcaaa gtactttaca acactagatt taaaatccgg attccaccag      2520
     attttacttg ccgaaaaaga tagagaaaaa acagcctttt ctgtaggaag cggaaagtat      2580
     gagttctgca ggctcccttt tggcttgaaa aatgcaccta gtatttttca gagagccatt      2640
     gacgatgtgc tcagagagca aattggaaaa tcttgttatg tttacgtaga cgacgtaatc      2700
     attttttctg aaaatatgga aagccatgtc aagcatatcg cctgggtcct agataaacta      2760
     tacgaggcca acatgagagt ttcaccagaa aagtcgcact ttttcaaaga aagtgtagaa      2820
     tacctaggtt tcgtagtctc aagtaatggt ataaagacat gtccaagtaa agttgaagcg      2880
     attcgtaact atgaagtacc aacaactttg tttaacgtca gatcattcct tgggttggca      2940
     agctactata ggtgtttcat caaggacttc gcgtctatag caaaacctat aagcgacatc      3000
     ttaaaaggcc aaaatggcaa agtgagcgcc ggacaatcca aaaaaaattc cagtaaaatt      3060
     tgacgagagt caacatgcgg cattcgagaa gctaaaagag gttcttgcat ccgaaaatgt      3120
     aatgttgctc taccctgact acaagaagcc gtttgattta acaacggacg cttcatcctc      3180
     tggtcttggg gcagttctgt cacaaggtgg aaaaccaatc accatgatat caagaacatt      3240
     aaaggataga gagcttatct ttgcaacaaa tgagagggaa ctacttgcaa tagtttgggc      3300
     tttaaaaaac ctccgaaatt atctatatgg ggtaaaaaat ttaaatatct ttacggacca      3360
     tcagcctctg acgtttgcag tatccgaccg aaacccgaac gcaaaaatca ggcgttggaa      3420
     agcttttata gatgaatata acgcaaacat ctattacaag ccagggaagg agaactacgt      3480
     tgcggacgca ctgtcacggc ataatattca tgccctagag gacgatgtac agtcagacag      3540
     agccacaatt cacagcgaaa tatcgctcac atacaccata gacacaacag acaaaccaat      3600
     caactgtttc caaaaccaaa ttataataga agaaaataat atagcctctg atcgtacagt      3660
     tatcctattt ggtaagaaaa tccgacatac aattcatttc tcaaacagag actcgttaat      3720
     caaaagagtt tgcgatgtag tcaaaaaaga tgtcgtaaat gcaatccatt gcgagttacc      3780
     aatattagca ttcatacaac ataaactaat agaaactttt ccaacaacaa catttcgata      3840
     tacaaagtac atagtaaatg acatttttga taaaaacgaa cagaaagaaa taattgcaac      3900
     agaacacaat cgggctcaca gagcagccca agaaaatgtg aagcagattt tacaagacta      3960
     tttttttccg aaaatgacaa aattaacgaa cgaagttgtt tcaaattgta aaatttgtaa      4020
     aacagctaag tacaatcgtc acccacaaaa acaaatactt ggagaaacac ccataccttc      4080
     ctatgtgggc gaaatactac acatagacat atactcaacc aataaaaaat acttccttac      4140
     gtgcatagat aaattttcaa aatttgcaat tgttcaaccc atcgcttcaa ggacaataat      4200
     tgacatacaa tcagcaattt tacaacttgt aaatttttac cggcatacca agacgatcta      4260
     ttgcgataac gagccctcca taaagtccga aacaataaaa tctctgctaa acaatcaata      4320
     taacattcaa atcgtaaatg ccccaccact ccatagtaca tcaaacggac aagtcgagag      4380
     attccatagc accctcggtg acattgcaag atgcctaaca gctcaaagga aaattactga      4440
     cactgttgaa acgatacttc aagcaactat cgaatataac aatacaattc actcagtaac      4500
     ggacaaacga ccaatcgata taatccactc atcctcccca gaactcgaaa tagagatagg      4560
     aaataaaatt caaaaggcac aacaactcct aacaaataga gtaaacgaaa caagacacaa      4620
     tagacaattc caaataggcg acacagtttt ggaaaaaaca aacagacgct tagggaacaa      4680
     actgacacca ctatacaacg aaggcaaaat tgacgcagac ttggggacaa cagtcttaat      4740
     aaaagggagg gtggtccaca aggacaatct aagataggca aaacattaaa ttcccttttt      4800
     tatcttttta ggatttggac tatacttctt tttgctacaa cgataacagc gaaattgact      4860
     gactatacta acatggacta cataccgatc ttggacggat acgtaaccat ttggacggat      4920
     ttccaatact tgaagcactc aaccaacctt accctatact cagaaatagt aaaaaatacg      4980
     aaagaattag caaaccattt cccccgatca catatgagaa tgttattaga cgcagacata      5040
     caacatatag aaacattaat agctacagta aatgtccacc atagacatgc taggagtatc      5100
     aatatgctag gcaccgttct aaaggtcgta gctggcacgc cagaccatga tgatttcgag      5160
     aaactaaaat ttacacagaa tgaacttgta gagtcagaaa ataggcggta acccctaaac      5220
     acaaaaaggc cgggacaaat ttaaaaaggt aaatggcccc cgtaaactcc ttgttaaaaa      5280
     ccccaaaggt aaaacaaggt ggcccccggg ccattatatt gaaacgctgc taacaaggaa      5340
     atagaataaa tatttcagag ttaaaaaccc tttatactat tcagtatgga atcccactga      5400
     tttaaaaaaa cattgttaat gaacactcta taaatatcac tatttactga cttaatggaa      5460
     gtatctcaaa ttaaagtttt gttaagcgaa aattttctac atttcattat aagatatcct      5520
     aagcctagca tagtatgtaa aaaattaacc gtataccctg tccaacacaa cggcatcata      5580
     ataaatttcg ccgaagacta caatttagct gactgtggaa atcatgtaat atcaatagga      5640
     aattgtagta cagccctcac aataacgttc tgcaagaagt caccctacac aacatgcgct      5700
     caacagctac actcaggtga caccgcacat tgttcaactc ggcccagcca cctcgaacct      5760
     ctaaccatag tcgacgatgg agtaatcatc atcaacgacg gagcagctac agtcaacgag      5820
     cagatggtaa aagggacgtt cctccttacc tttgacgaca agataaaggt aaacaacacc      5880
     gtataccaaa accaaaaaaa ctacgtgagg aaatccccgg gaccagcggt atctgcgctc      5940
     ttaaatataa cagaccacca agagatacca agcctgccat acctgcagaa gataagcata      6000
     aaaaatctgc gggatattgc tcaactagag gaagggctag taagaaggcc aatagtatct      6060
     gggctaaccg tggccatcct tttactctcc tgctacgctt cgatgaaact ctatcaaaga      6120
     catcagagga acaaacgtca acgtgatctt caaacattaa ttaacagttt caagaaagcc      6180
     gaggacgtca ttcatctaag tgggggagg                                        6209
//
ID   Gypsy-11_DMo-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-337
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 337 BP; 106 A; 74 C; 69 G; 88 T; 0 other;
     agttaacaca atcgaccagc aaaacataaa tgttcagatt gatcacgcgc cgtcagcatg        60
     aatgtagccg ttcccagcgg atattgcaca acagcagcag tggctccaac gcgcaacaat       120
     gttgttgccc gaagtaatgc gatgcctcgc gtaaatatgc aatgtcagca taatcagggt       180
     ttagggctag ctttggatat aagaatttat gtcactgtac tttagttgat ttttgataat       240
     aaagaacgtc ggtcgtcgcc acgggattat tgaagtctac tcattttgtg caacaccgca       300
     cactaacatc taacaactac agcaaaaaag cttaatt                                337
//
ID   Gypsy-11_DPer-I repbase;    DNA;    INV; 8270 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8270
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1525-1525 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1392..2696
FT                 /product="Gypsy-11_DPer-I_1p"
FT                 /translation="MGVQWISYRRKDELQAIAVEFGLGETGTVDELRSRIS
FT                 AFISRGEHPTAIEKRIKELGTVFDSAPSPRNPRNTSTSPGPSQREQKEGIC
FT                 AEQPLSIVIPEFPRAAQGPGYGDSGRLEATTDRRHGDNHYQHRFPEEAGTS
FT                 RPGREEISFAALADKLRNWGLKFDGHSDALAFIERLEERVDSYGGSPAQLP
FT                 RAISGLLTGKAEGWFRTFQMQGKPWTEFRKEFLEFFLPPRYFQRLEDTIRS
FT                 RHQRPREAFQDYLIDLRLMMQRAQYTPDRELDRIYENLRPEYQLFTRRHEF
FT                 ETLRELTHLIVAYETTRDREQTRHAYDRPDTKARTTSYQGPGLSTPQHAPP
FT                 DDTGPSRSAETASRVVTQDGDRPVNTRRACRNCGEEGHFSSSCRNRRVLFC
FT                 WECGRRGIRTIDCCRLSESGNGPSLRSSGNRSETYLQGPLE"
FT   CDS           3194..7414
FT                 /product="Gypsy-11_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, zinc-finger and integrase."
FT                 /translation="AVRVGKRAESPLVREPIGDIPPGPPGVTHPLSLEGGR
FT                 IAALVTIEGVPLTATLDTGATRSFVSQRIAHEVSTGGNARNIRTTVRLADG
FT                 TAKEVTQAVSVKVRLDQQETRVILLVLPMVVDDIILGLDFLCGVQTIIQCG
FT                 RAYLQLTQRAIRETNPIPTSSSTRPRMVTFSDERPATASAAPTPSTNPTAT
FT                 HRTKPTHQNLEPARPSNVPVTTHLNPNHARPSNVPVTTHQNPDHARPSNVP
FT                 VTTHQNLEPARPSNVTMTTHQDREHARPSNATRTQPTIRYDHARIINEATT
FT                 ETTATPLDTPRASPSAPKNTQSNETTPETTATPLDAPRASPSASKTTQSIP
FT                 NRTTLLSLDHARTRSDIRTTLPSLDHARPSRNTRTTLLSFDHARPSNDTRT
FT                 THQSPDRDGPGGAKNTTRSTRAKSDMPSRAAQPVQTTPQETSLAPQHDPLR
FT                 LEDDGPEGHGRVEVDHLASNPPTDYQLAPLADAAAGRQRNPFRRSDSTNPI
FT                 TVNLAVITCAPLEEISPPTAPIIEPPLPPWVAEFLKQELAKFEGLKGVSHI
FT                 AEHTITLKDDKPIKQRYFPKNPAMQKIINAQVDELLQDGRIEASKSPHSAP
FT                 IVLVGKKTGEMRMCVDYRQLNAQSIPDAYPLPRINHIIERLRNARYISTLD
FT                 LKNGYWQIPMAEGSRECTAFTVPGRGLFHWKVMPFGLHSASATFQRALDSV
FT                 IGPQMEPNAFAYLDDIIVIGAALEEHVDHLREVFRRLREANLRLNQKKCSF
FT                 FQKSIVYLGHVISERGIHTDPDKIVAVRKLAPPSSIKELRRCLGMASWYRR
FT                 FVPNFAAIVQPMTSLLKKEKRWIWSDEQQAAFEELKEKLTQAPVLACPDFT
FT                 ERFALQTDASAYGLGAVLTQQIRGEERVIAYASRRLLKAEENYSATEKECL
FT                 AIVWAIRKLRCYLEGYHFDVITDHLALKWLNSINNPTGRIARWALELQQYR
FT                 FDVLYRRGSQNIVADALSRQPIDTIQRTLEDLPTCPWIQRLLKRIQARPEE
FT                 CREFIIENGQIYRQPGHRPIEEESHQWKLCVASGHRRRVLEECHDHPTAGH
FT                 LGIRKTATRVTQRYYWPGLYRDVARYVKHCESCQKFKVSQNKPAGHMYTRQ
FT                 AKGPFDILCADFVGPLPRSTHGNTMLLVFFDSFCKWVELVPLRKATTAHLE
FT                 KAFRERILCRFGVPWKFVCDNGTQFTSRSFRKFCEVAGMELEHTAPYTPQQ
FT                 NPTERANRTIKTMIAQYADGDQRTWDDLLPELSLAINSSTSDTTGFSPAFL
FT                 VLGREPRLPGALYDEVTPGLGNEPEPAHGKATRLQEVFKVVQENTQRASQE
FT                 QKRTYDLRRREWRPELGTLVLLRQHHLSKAADGFAAKLAPKYDGPYKVTRF
FT                 LSPNIVRLQIQQGKQRKTASLADLKAFHGVEHPEENPTTLERPE"
FT   CDS           7667..8845
FT                 /product="Gypsy-11_DPer-I_3p"
FT                 /translation="MKRLRDGRQARPLGANGDTTGHPSGDQRPEVPAPADE
FT                 PTASRTRGWIVNPDGPSTSRQAQLRRVGEATLRQPGWMPWGQRAAAIQGWI
FT                 DQQTQDPGTDAEEEVEPDGRFATAGVRSAPNHDVAALNRLWLGSYGAAIDD
FT                 DNATTDTDEHETILRDAPSLASTLQYEGSGHPVARGSEWDSPLWAEWDLAG
FT                 QGRVVTPPAVRNEDESGDGAGPHYSDVSNASDAGEGAGPQRDDGGSDSGSL
FT                 MNLDFAPQANQXWAPANPSGSADIPPPLFAAHAGLPPQRPDEEVRDFGSEE
FT                 SLPLEYGEMADLLQILRLHPTVAAVQDDPEWAEAPPEWRTNAPGRRLPRDL
FT                 ISNITVFLRDRAYRLGVRRLEVHDGTCFRVKITRSRAVTVTLRHPRSMEG"
XX
SQ   Sequence 8270 BP; 2130 A; 2577 C; 2251 G; 1311 T; 1 other;
     tgccactgcc acgccccgta ctgttccctt tcctctcggt cgctcccgtc tgcgggactg        60
     cctccctgtc cccatcgacg gcccggaact cggagtcccg gcaaattata aatattgctg       120
     taatttcgac cctggagtag actgagatat gtaccccagc ccaggatcgc ttccttacag       180
     atggcgcccg agcagggact ccgggattcc gttatgtttt ggggcgctaa gtagaacagt       240
     tgatcagaaa acgagtagca gagggaatcg ggactgtacc acgcgcaagc acggccagtc       300
     ggaatcatta ggccaagaat agctgtatat ctctggaaaa ccgcacgtga ggtcgcccat       360
     tattcacgta cagccgagac tggcttccct aacctcccta gcaatagcgt cagcacgtgg       420
     ccgccgcgcc cacacgagga ggagaacgcc gtggcgagac ggcagagaaa gagaaccgag       480
     ccgaagctgg gcagagatcg caagaaagag agcgacacgc acgcggcgag cagcgagtcg       540
     tgagctgtag acgccgagcg agcatcggaa ccctcccgta gaccgaccgt cccggctata       600
     tatgtcggac ccagacccag cgaggcagtc agtgcccggc gtcagcgaag agcagtcagt       660
     atccagcgtt caagcagtca gtgcccggcg tcgcgagcag tcagtgcccg gcgtcagcga       720
     gaagcagtca gcgcccggcc ttcaagcagt cagcatccag cgttcaagca gtcagtgccc       780
     ggcgtcagcg aagagcagtc agtatccagc gttcaagcag tcagtatcca gcgttcaagc       840
     agtcagtgcc cggcgtcagc gaagagcagt cagtgtccag cgttcaagca gtcagcgccc       900
     ggctcgcatt cgaagcagag agtcaatgcc cggccttcaa agtgatcggt cagcgttcag       960
     ccatcaacac gagacgagat ccagcgctta aatcaacgaa cccagcacga ccaggacgac      1020
     aaggacaatt ccaaggacaa cgatagcaag gactattgac cggcccagca aggatcaaca      1080
     gtcaggacaa ttccaaggac aacgatagca aggaccatcg accggcctag caagggtcga      1140
     tccccaggct actataaaga ccgacgacaa ccacgaccat cgaccaggac cccaagcagc      1200
     aaggactcca aggacgcccc actggacaac cgtgttaacc gtgcatacgc cgtgcttccg      1260
     tgactaaccc caaggactcc ggtattcagc gcgttaccta agaaaaagat tctaccggag      1320
     ggtcaatacg tgatactacc gtcggaaacg cgaaagacct cgaagtgcca gttcgaccac      1380
     cgtgcttcga catgggggta cagtggattt cgtatcggcg caaggacgaa ttgcaggcca      1440
     tcgccgtcga attcggcctc ggtgaaaccg ggacagtgga cgaactgcgc agccggatct      1500
     cggccttcat ctcgcgcggc gagcatccga cggcgatcga aaagcggatc aaagagctcg      1560
     gaacggtctt cgacagcgcg cccagcccga ggaacccgag gaacacgtcc acgtcgccgg      1620
     gaccgagtca gcgtgagcag aaggaaggga tctgtgcgga acagccccta tccatcgtaa      1680
     ttcccgagtt cccgcgcgca gctcaaggtc ctgggtacgg cgactctggc cggcttgaag      1740
     ccacgaccga ccgacgacat ggtgacaatc actaccagca ccgcttcccc gaggaagccg      1800
     gaacttcgcg acccggaagg gaagaaatct ccttcgccgc cctcgccgat aagctgcgca      1860
     attggggcct gaagttcgac ggacactcgg atgcgctggc tttcatcgaa cggttggaag      1920
     aaagggtcga ctcatatggc gggagcccag cacaactgcc gcgagccatc tccgggctac      1980
     taactggcaa ggcagaagga tggtttagga cgttccagat gcaaggcaag ccatggaccg      2040
     agttccggaa ggagttcttg gagttcttcc tacccccgcg atactttcag cgcttggaag      2100
     atacgatccg ctcccgtcac caacgacccc gagaagcctt tcaggactac ttgatcgacc      2160
     tccgactcat gatgcaacga gctcagtata ctccagacag ggagctggac aggatctacg      2220
     agaaccttcg gccggaatac caactgttca cccgtaggca tgagttcgag acgttgcgag      2280
     aactgaccca cttgatagta gcgtacgaga caacgcggga ccgcgaacaa acccgccacg      2340
     cttacgaccg cccagatacg aaagccagaa cgacatcata ccaaggaccc ggattatcca      2400
     ccccgcagca tgctcctcca gacgacaccg ggccctcccg gagcgccgag acggcaagcc      2460
     gcgtagtgac ccaggatgga gaccggccgg tgaacacacg ccgggcctgc cggaattgcg      2520
     gggaggaagg tcatttcagc agttcatgca ggaatcggcg agtgctattc tgttgggagt      2580
     gtggccgccg cggcatccgg acgatcgact gctgtaggct gtccgagtcg ggaaacgggc      2640
     cgagtctccg ctcgtcaggg aaccgatcgg agacatacct ccagggcccc ctggagtaac      2700
     tcatccctta agtttggaag gaggcaggat cgccgcgcta gtaaccatcg aaggagtacc      2760
     gctcacagct accctcgaca cgggagcgac gcggtcgttc gtcagtcaac gcatcgctca      2820
     tgaagtaagt accggaggga acgcacggaa tataaggact accgtccgcc tggcggacgg      2880
     tacagcaaag gaggtgacgc aagcagtttc ggtcaaggta cgtctggatc aacaggaaac      2940
     gcgggtgatt ctattagtcc tacccatggt agtggacgac atcatactgg ggctcgattt      3000
     cctttgcggc gtccagacca taatacaatg cggccgagcg tacttgcagt tgacccagcg      3060
     ggcgatccgg gaaaccaacc cgatccccac atcatcctcg actcggcccc gcatggttac      3120
     ttttagtgac gaacgtccag cgacggcatc cgctgctcct accccctcga ccaatccaac      3180
     agcgacccac cggacgaaac caacgcacca gaatctcgaa cccgccagac ccagcaatgt      3240
     accagtgaca acgcacctga atcccaacca cgccagaccc agcaacgtac cagtgacaac      3300
     gcaccagaat cccgaccacg ccagacccag caacgtacca gtgacaacgc accagaatct      3360
     cgaacccgcc agacccagca acgtaaccat gacaacgcac caggatcgcg aacacgccag      3420
     acccagcaac gccacccgaa cccaacccac gattcgatac gaccacgcca gaatcatcaa      3480
     cgaagctacg acagagacga ctgcgacacc gctggacaca cccagggcca gtccgtccgc      3540
     cccgaagaac acccagagta acgaaaccac gccggagacg actgcgacac cgctggacgc      3600
     acccagggcc agtccgtctg cctcgaaaac cacccagagt atccctaaca ggacaacgct      3660
     tctaagcctc gaccacgcca gaacccgaag tgacatcagg acaacgcttc caagtctcga      3720
     ccacgccaga cccagccgca atacaaggac aacgcttcta agcttcgacc acgccagacc      3780
     cagcaacgat acaaggacaa cgcatcaaag ccccgaccga gacggacccg gcggcgctaa      3840
     aaatacaacc cgatcgacgc gagccaaatc agacatgccc agccgtgcgg cgcagccagt      3900
     gcaaacgacc ccgcaggaaa ccagcctcgc tccacaacac gacccgttac gcctggaaga      3960
     cgacggccct gaaggacatg gacgggtcga ggtagaccac ctcgcgtcta accccccaac      4020
     ggattatcaa ctcgcccctt tagccgatgc cgcggccggt cgacaacgca acccttttcg      4080
     aaggtcagac tcgactaacc ctatcaccgt gaacctcgcc gtcataacat gtgccccgct      4140
     cgaagaaatc tcgccaccga cagcccccat catcgaacca cccctcccgc cgtgggtagc      4200
     cgagttcttg aagcaagaat tggccaagtt cgagggattg aagggcgtgt ctcacatagc      4260
     cgagcatacc atcaccctga aggacgacaa gccgataaag cagaggtact tccccaagaa      4320
     tccggccatg cagaaaatca tcaatgctca ggtcgacgag ttgctgcaag acgggcggat      4380
     agaagcttca aaaagcccac acagcgcacc catcgtactg gtgggaaaga agacaggcga      4440
     gatgcggatg tgcgtagact accgacagct caacgcgcaa tcgatacccg acgcctaccc      4500
     actgcccagg atcaaccaca tcatcgagag gctccgtaac gcgcgttaca tctcgacgtt      4560
     ggacctcaag aacgggtatt ggcagatccc tatggccgag gggagccgag aatgcaccgc      4620
     cttcaccgtt ccgggccgag gactcttcca ttggaaggtg atgccgttcg gactacactc      4680
     agcatcggct acgttccagc gagccttgga cagcgtcatc ggaccacaga tggaacccaa      4740
     cgcctttgct tacctcgacg acatcattgt catcggagcg gcactggaag aacacgtcga      4800
     ccatctgcga gaggttttcc gaagactgcg ggaagccaat ctaagattaa accaaaagaa      4860
     atgcagcttt ttccagaaaa gcatcgtata tctgggacat gtcattagtg agcggggtat      4920
     acacaccgac ccagataaga tcgtcgccgt ccggaagttg gccccaccaa gttcaataaa      4980
     ggagcttcga cgctgcctag gaatggcatc gtggtaccgg aggtttgtcc caaacttcgc      5040
     ggcgattgta caacccatga ctagcctctt gaagaaggag aaaaggtgga tctggagtga      5100
     cgaacagcag gccgctttcg aggagttgaa ggagaagtta acccaagcac ccgtcttagc      5160
     ctgcccggat ttcacggaga ggttcgctct acaaactgac gcaagcgcct acggtctagg      5220
     ggcagtcctg acgcaacaga tccgcggaga ggagagggtc atagcctacg ctagtcgaag      5280
     gctcttgaaa gcagaagaaa actactcggc cacggaaaag gaatgcttag ccatcgtctg      5340
     ggccatcagg aaattacgat gctacctgga gggttaccac ttcgacgtca tcaccgacca      5400
     tctcgctttg aagtggttaa actcgatcaa taacccgacc ggtcgcatcg ctcgttgggc      5460
     tctggaactc caacagtatc gctttgacgt gctttaccga cgcggaagcc aaaacatcgt      5520
     agcagacgct ctttcccggc aacctatcga caccatacag cgaaccctag aagacctgcc      5580
     cacctgcccc tggatacaaa ggttgctcaa acgtatccag gcacgacccg aggaatgcag      5640
     agaatttata atcgagaacg gacagatcta ccggcagcct ggacaccgac caatcgaaga      5700
     agaatctcac cagtggaaat tatgcgtcgc cagtggccat cgtagacgag tgttagaaga      5760
     atgccacgat cacccgaccg ccggacactt aggaatacgg aagaccgcca ctcgggtaac      5820
     ccaacgatat tattggccag gactctacag ggacgtggcc cgatacgtga aacattgcga      5880
     aagctgccaa aaatttaagg tgagccagaa caaacccgca ggtcacatgt atacgcgcca      5940
     ggctaagggc ccgttcgaca tcctttgcgc ggacttcgta ggcccactac cccgctcaac      6000
     gcacggcaac acgatgctcc tcgtgttctt cgactcattc tgcaaatggg tggaacttgt      6060
     gccactccgg aaagccacaa ccgcccactt ggagaaggcg ttccgagaga ggatactctg      6120
     ccgattcggg gtcccgtgga agtttgtgtg cgacaacgga acacaattca ctagtcggtc      6180
     cttccggaaa ttctgcgagg tggcgggaat ggaactcgag cacaccgcgc cgtatacccc      6240
     tcagcaaaac ccgacggaga gggcaaaccg gaccatcaag acaatgattg cacaatacgc      6300
     cgacggggac caacggacct gggacgatct cctccccgag ttaagcttgg ccataaacag      6360
     cagcacgtcg gacaccacgg gcttcagccc ggcctttttg gtactcggac gagaaccaag      6420
     gctaccagga gccttgtacg acgaagtgac cccaggatta ggaaatgaac cagagcctgc      6480
     ccacgggaag gcgacacgac tgcaggaagt attcaaggtc gtacaggaga acacccaacg      6540
     ggcatcccaa gagcagaaga gaacatacga cctccgacgg cgcgagtggc gacccgaact      6600
     aggaacccta gtcctccttc ggcagcatca cctatccaaa gccgccgacg gtttcgcggc      6660
     caagttggcc cctaagtacg acgggccgta caaggtaacc cgattcttat ctcccaacat      6720
     agttcgacta cagattcaac aaggcaaaca aaggaaaaca gcgagtttag ccgacttaaa      6780
     ggccttccac ggagtggaac accccgagga gaacccgacg acgctggaga gacccgaatg      6840
     acttgccgac ttcgcaaggg ccacttgcgg tagcgcgcta ccgtaacgtc ctcgccccgt      6900
     aaggggcgcg acccacgaaa ccgtaagcta cgtatacatc cccttatggg attagataag      6960
     tactacatcc aatgtaaaca tcttcttact cgcaccgctc aagcaggata gggggagggt      7020
     attaatactt ctagttaaga caggcaggtt ctaaccgaca ggcattttct ccctagaatc      7080
     gacagaagac atgaagcgtc taagagatgg aaggcaagct cggcccctag gggcaaatgg      7140
     tgatacgacg ggacacccta gcggagacca gcggcctgaa gtcccggcgc ctgccgacga      7200
     accgactgca agccggactc gcggctggat cgtcaacccc gatgggccat ccacctcccg      7260
     tcaagcccag ttgaggcggg tcggagaggc gactcttaga caaccgggct ggatgccatg      7320
     gggccagcgc gcggcagcca tccaagggtg gatcgaccaa caaacacagg acccggggac      7380
     cgacgccgaa gaggaagtgg agcccgatgg ccgcttcgca accgcaggtg tccgctcggc      7440
     gcccaatcac gacgtcgccg ccctgaatcg cctttggctc gggagttacg gggctgccat      7500
     agacgacgac aatgcgacca cggacaccga cgagcacgag acgatcctgc gcgacgctcc      7560
     aagcctggcg tccacgctgc agtacgaagg gagcggacac ccagtggctc gcggaagcga      7620
     atgggactcg cccctttggg ccgagtggga cctggccggt caaggtcgag tagtcacccc      7680
     tccagctgta cgcaacgagg acgaatccgg tgatggtgct gggccacact actctgacgt      7740
     gtccaacgcg agcgatgcag gggaaggagc aggaccccaa cgcgacgacg gagggtccga      7800
     ttccgggtcc ctcatgaacc tggacttcgc gccacaagcg aaccagcakt gggcaccagc      7860
     caacccgtcg gggtcagctg acatcccgcc ccccctcttt gccgcccacg ccggactacc      7920
     cccacaacgt cccgatgagg aagtacgcga cttcggctcc gaagagagcc tcccgctgga      7980
     gtatggcgag atggccgacc tgctgcaaat cctccgactc caccctacgg tagccgcggt      8040
     gcaggacgac ccggaatggg cagaggctcc ccccgaatgg cggaccaacg cgccagggcg      8100
     gcggttgccc cgggacctca tatccaacat caccgtgttc ttacgcgatc gagcctaccg      8160
     actgggagtc cggcgactgg aggtccatga cggcacctgc tttcgcgtca aaattacccg      8220
     tagccgggct gtcacagtca ctcttcggca cccccgaagt atggaggggg                 8270
//
ID   Gypsy-11_DPer-LTR repbase;    DNA;    INV; 2035 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2035
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1526-1526 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Both termini are uncertain.
XX
SQ   Sequence 2035 BP; 512 A; 570 C; 583 G; 368 T; 2 other;
     tgtgagggag cgtacgctcc acccacattt tttccaccca tcatcttgcc ggcattttcc        60
     cactggaggg acccgaaatt atttcattgg aattaagatt tttgactttt tattttctag       120
     gtttaagcat tgactgttca gttttaggtt aagggggagg ggggaaggcc acgaaggcca       180
     cttgttatta attttttatt atacggcccg aggggtctct aagccccacg tagcttgcta       240
     ttttcttaaa aggggggcga gtcgcgatca cggcggacgc cactggcttt ccagaaccaa       300
     gacccaacaa caacgacgca gcagcggcca aagagagacg aggaaaacaa cgggatccag       360
     cgagccgccg gcatcgacgc agcaacaggc agagagggaa gcatcgacaa gataacccaa       420
     caacaacgac gcagcagcgg ccaaagagag acgaggaaaa caacgggatc cagcgagccg       480
     ccggcatcga cgcagcaaca ggcagagagg gaagcatcga caagataacc caacaacaac       540
     gacgctgcag cggccaaaga gagacgagga aaaacaacgg gatccagcga gccgccggca       600
     tcgacgcagc cacggcagag aggaaggcgc tgacaagata agccaacagc atcgacgcag       660
     cagcggccga ggagaagcgc tgacaagaca agccgacagc atcaacgcag cagcggcaga       720
     agagggccgc tgagagcagc aatcaaatcc agcaacgacg ccccagcagt ggaaaagaga       780
     ggcgaaagtc accggcgcag ctacagacgc caaaagagag gggaaataac gacgctagcc       840
     gcccacgccg acgctggatc ggcagagcca gcagaacgcc ggctctgaag ctgggaaaac       900
     gtggaaagga agtcagttag atgagaggca gtcgtaggaa tcggacgcgt tgacggaaga       960
     aaaaatccga gtggcgcgcg agaagaaaag gaacacacgt ggcggactac ttcgagatta      1020
     acgcgatcag cagtgcgcga aggatccggc atcgacacta cgtttacgga ggcgggatcc      1080
     tgcaccggcg ctgcaatccc ggggaaaaga ggaggctttc gacaagcaca agcgtgggag      1140
     twsaggggta agcgagtctc aagacgtgca tgcgggctgc tgagcggtgc gataggtagg      1200
     gaaccaaaga agaataaagt gaaatgtaac gaatataacg aaaacatagc ctggtcacca      1260
     acaatctata tgctagggaa cctgaatgcc cggggcttca tcttctccgc ccttccccac      1320
     gcctcttgcc cgagtctccc tctttggcta cacccacgtg gtgatccgta ttcgctccgg      1380
     atgcccgtcg gggcccccgc gtgattcccc cagtagttcg tagcccaaca ggatcctgag      1440
     accgctgtcc ggcgattgcc taggcgttct cggtgacaac tgttggcgtt ccccccgcat      1500
     gattccctcc agtagtttgt gaccccgcag taccccagta gttcccaggg tcccgaaggc      1560
     gctgtccggc gattgcctaa gccctctcgg cgatgcctgc cctgtatgat aaagactttc      1620
     gcagtaacgt ttagtctgat agtgtcccgt gagtgctatc cggcgattgc ctaggcactc      1680
     tcggcgatgc ttgtcggtat ccccgacccc ccgtagtaat tcttagttcg acagcgtccc      1740
     gtaagtgcta tccggcgatt gcctaggcac cctcggcgat gcttgtcgat gtctccgacc      1800
     cccgtagcaa ttcttagttc gacagtgtcc cgtgagtgct atccggcgat tgcctaggca      1860
     ccctcggcga tgcttgtcga tatctccgac ggccccgtag caattcttag ttcgacagtg      1920
     tcccgtgagt gctatccggc gattgcctag gcgccctcgg cgatgcttgc cgatatctcc      1980
     gaccctcgta gtaattctta gtccgacggg gcccccgcga gtgctgtccg gcgat           2035
//
ID   Gypsy-11_DRh-I repbase;    DNA;    INV; 6527 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DRh_;
KW   Gypsy-11_DRh-LTR; Gypsy-11_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6527
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1571-1571 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2477-2899] - Reverse transcriptase
CC   Positions [3968-4444] - Integrase core
CC   LTRs are 91% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1733..4852
FT                 /product="Gypsy-11_DRh-I_1p"
FT                 /translation="MVVTNIDLGGQVVELALLVMDSMLDKVILGLDFLCAI
FT                 GTTIRCGRARLHLREAGPRTTRTNENHHAGNRPVMANLQGLGTEVTREGST
FT                 ADMEDVRKANWEITEIGERTEKHTGNELEKGEKIQENQGTQENQGVQENQG
FT                 TQENQEEEATPPRREGEWSVADQEHIDRFLQQELEEFEGMSGVSHIAQHTI
FT                 TMRDDRPVKQRYYPKNPAMQRVIDDQVNELLTAGQIEPSKSPYSAPIVLVR
FT                 KKNDEWRMCVDFRQLNARSIPDAYPTPRINYILERLSQARVLSTLDLKSGY
FT                 WQIPMASDSKQYTAFTVPGRGLFQWRVMPFGLHSAAATFQRALDSVIGPEL
FT                 DPFAFAYLDDIVVIGRDLAEHTRNLREVFQRLRAANLRINKEKCSFFKRKL
FT                 KYLGHMVSEDGIHTDPDKVAAVRELRPPTSLKELRRCLGMASWYRRFVPNF
FT                 ATIVQPMTKLLRKSVKWRWDTEEQAAFDTLKERLTSAPTLACPNFDQRFTV
FT                 QTDASDVGLGAILTQEMDGTERVIAYISRRLEKAEENYTTTEKECLAIVWA
FT                 IRKWRCYLEGYEFTIITDHLALKWLNSIESPSGRVARWALELQQFRYSVKY
FT                 RRGCQNVVADALSRQPLAVLQCTETDKEECEWWARKREQILGSPENFPDFT
FT                 YENGELYRRLGTRPDDADFVPWKLCVPQHHRRRVLAECHDAPTAGHLGIRK
FT                 TILRVASKYYWPGMYRDVKRYVQNCQTCQRFKSDQQKPAGRMLSRRIEEPC
FT                 STWCADFVGPLPKSKSGNTMLLVFFDAFAKWVELIPLKRATTATLIKAFRE
FT                 RILGHFGVPRTFVCDNGTQFTSRAFKEYMRELGCELQYTAPYSPHENPTER
FT                 ANRTVKTMIAQFIEGEQSSWDNLLPEMTLAVNSSISDTTNFSPIFLMQGRE
FT                 PRMPKALYEEKTRGNGNTPEDFTIKAAKMKEIFEVVKINAERASADQMRHY
FT                 NLRRREWRPALGSLVLVKQHQLSRGVDGFAAKLAPKYDGPFRVLKFISPNI
FT                 VRIQRPGERKRKVANIAELREFRDDETGEGEEVT"
FT   CDS           4988..6247
FT                 /product="Gypsy-11_DRh-I_2p"
FT                 /translation="MEEGESDSTQEWTGEDGEMDDGGSESEDVPVDLTLAD
FT                 TEDSDEEAATGAEGDNLSYSSELPDESTRGTSLGSTSPRGTSPRYASPRYA
FT                 SPRYASPRYASPQYASPRYASWYESNPRFATEESPPSTYRPFPRGRCQSPH
FT                 PASFANLGGHMYEPRHDDYSPTRGRSRDPRRGQGVYQRTTETTVDRYSELQ
FT                 ESEEEEDEDSEWTASFIREREDYHWATIPGGYRVTQVRQVTMDIIPPLGQG
FT                 PAFRFEANCGRTRAPPLAARAAWREGCPNENTQVAREPTPPPQEVDDNTRQ
FT                 SREDRRSTGQAVNDEQDAAEGTGAARRRRIRPRKYCTWDSIPSEEEQEDDQ
FT                 PLLRRRYAESSGDEWEVSQDTSFPTLSLRRRNSRAATIEPEEPQAIPEAEP
FT                 GTEAGVEDLDVIDFGLGLEGVEEGYG"
XX
SQ   Sequence 6527 BP; 1853 A; 1653 C; 1836 G; 1182 T; 3 other;
     tccttacaaa tggcgcccga gcagggacag atgtgggtct gatcacgatc gatcagcacc        60
     aaaaacatca agcggattaa agacccgtaa agtgtgaggc tggctaaaat agttaaggag       120
     taagaacgtc gatcaagaac ggatttttga caagaaacac aaagggagca caccggatat       180
     aacgcaatgg cagaaaacga acaaggaaag aaaactaata tgggttcgcc agacagtcgc       240
     atagggactc gttggatcta tacgctaagg aaggacgaat tactcatctt cgcacaggaa       300
     ttcggattcg acggcacagg caaggtggac gagatgagaa ggcgttttgc agaaatcgtc       360
     aaagcaggtg agctctctcc atcccaaagg gcccgattgg tccgattaga agccggattc       420
     gcgaatgggg gagtgaacga cgacgtgaaa agggtagaag aagtcgacct agaccccagg       480
     tcaatccaat tacaggtgcc aggatttttc acccctagag gtgggagccc tgtcgaccac       540
     gaacgagcaa ttgctacgga gggaaccacc ggccgtaata ataccaaatg taatcttaca       600
     cgggagaacg aaatggcttg gggaggaaat tttggccggg ccacagcaca cggtgtcata       660
     gcagagcaag tccgaaaatg gggactcaaa ttcaatggcc ataccgaccc gttggggttc       720
     ctagaggagc tggaggagag ggctacatcg tacgcccttc ccttagccca actaccaaga       780
     gttatgacag aaactcttac agacagggcc tcccggtggt ttaggaccag ccaactgcag       840
     ggagccactt ggccagtatt ccggcgggag ttcttagact ttttcttacc cccacattat       900
     tttcgacgat tagaagacga catcagagct cgttaccaac gtgagggaga gggcttcaag       960
     gattatgtga tcagacgaag gagttagata ggatttacga gaactgcctc cccacatacc      1020
     agatgtacgt aaaacgtggc gactttgaga ccttaggcca gcttttacag ttcgcagtcg      1080
     agttcgagag tatacaacat cgcgaccgta tacgattaca gtcccaagat cgctcgtacm      1140
     ggagtctcgg ccaaactcac gggaacgctc gagagtctcc gaggtcacag gtgccggcga      1200
     accccatcca ggttcgcaac cctttccgag gaaacccgca aaccccctta caacttgtcc      1260
     caatccatgc cacgggaaga aatctcgaat aggatgatga accaggaggc gctacaaaca      1320
     cctcccgaaa gtcggagttg tttcaactgt ggcgcagagg gtcactttgc gagggagtgc      1380
     cggaaccccc gacggttggt gtgttgggat tgtagaaggg aagggatcag gactattgat      1440
     tgttgtaggc gtcccgagtc gggaaacgac cagcgtcctc gaccaacccg ggagcagttg      1500
     gggacgagag taccgagaac cgggaatagg cgcacccctg cgcgtagaag acgggaagat      1560
     cgtagcgcaa gtattagtcg ctgacatctc tgtgttagcc actgtcgata gcggggccac      1620
     gaggagtttc atcaacgaaa cactcctcag acagctgaag gcatcagtga cagtgagaga      1680
     ggtgtgcacc ggcatacgct tggcagacgg gaccagcgtc agtatcacag gaatggtagt      1740
     caccaacatc gacctcggag gacaagtagt agaattagcg ctactggtaa tggactctat      1800
     gctagataaa gtaatattag gacttgactt tctctgcgca atcggcacta caatacgatg      1860
     tggacgggct cgactacatc ttcgcgaggc gggaccgaga accacccgca ccaacgagaa      1920
     ccaccacgca gggaaccggc cggtcatggc taatttacag gggctcggga cagaagtgac      1980
     ccgagaggga tctaccgccg acatggaaga cgtgcgcaag gcgaattggg agataacgga      2040
     aatcggagag aggaccgaga aacacacggg aaatgaactg gagaaaggag agaaaataca      2100
     ggagaaccag ggaacacagg agaaccaagg agtacaggaa aaccagggaa cacaggaaaa      2160
     ccaggaagaa gaagccacgc cccctcggcg agaaggggaa tggtcagtag cggaccaaga      2220
     acacatagat cgattcctcc aacaagagct ggaagaattc gaggggatgt caggggtatc      2280
     acacatcgca caacacacga tcacaatgcg agacgatcga ccggtgaaac aacgatacta      2340
     cccaaagaat ccagcgatgc aacgagttat cgacgaccag gtgaacgaat tgttaaccgc      2400
     aggacagata gaaccgtcca aaagtccata tagtgcaccc atcgtcttag tgcgtaaaaa      2460
     gaatgacgag tggcggatgt gtgtcgactt tcgacaatta aacgcgaggt caataccaga      2520
     cgcgtatccg acacctcgta ttaactatat cctagagaga ctcagccagg cccgagtctt      2580
     gtcgacatta gacctgaaaa gtggctactg gcaaataccc atggcatcag acagtaaaca      2640
     gtacactgca ttcacagtcc cgggtcgggg tctcttccag tggcgtgtca tgccattcgg      2700
     gttacactcc gcagccgcta ctttccaacg cgccctagat agtgtcatcg ggcccgaact      2760
     agatccgttc gcgtttgcgt atttggatga catcgttgta attgggagag acttagcaga      2820
     acatacacga aacctacgag aggtatttca gagactcagg gctgctaacc tacgcattaa      2880
     taaggagaaa tgctcatttt ttaaaagaaa actcaagtac ctgggccaca tggtaagcga      2940
     agatggtatt catacagacc ccgataaagt agcagcagta agggagttac gaccacctac      3000
     ctctctgaaa gaactgagac gatgtctagg tatggcatcg tggtaccgta gattcgtacc      3060
     gaactttgcg acgatcgttc agccgatgac caagctccta aggaagagcg ttaagtggcg      3120
     ctgggatact gaagaacagg ctgccttcga cacacttaaa gaacgtctca cgagcgcccc      3180
     caccctggcc tgcccaaact ttgaccaacg attcacggtc cagacagatg cgagtgacgt      3240
     cggattggga gcaatattga ctcaggagat ggatggaacg gaaagggtaa tcgcctacat      3300
     aagccgccgg ctggagaaag ctgaggaaaa ttataccacg accgaaaagg agtgtttggc      3360
     gatcgtatgg gccatccgga agtggcgctg ctatctcgaa ggatacgagt tcaccattat      3420
     cacggatcat ctagcgttaa agtggctgaa ttcgattgaa agtccatccg gacgggtagc      3480
     tcgatgggcc ctcgaattac aacagtttcg atactcggtc aagtacagga ggggctgtca      3540
     aaacgtcgtg gcggacgctc tgtcccgcca acccctagcg gtattacagt gtacagaaac      3600
     agacaaggaa gaatgtgaat ggtgggcacg gaaaagagag cagatcttag gaagcccgga      3660
     gaatttccct gatttcacct atgagaacgg agaactatat cgtcgtctag ggacccgacc      3720
     agacgacgcc gatttcgtgc catggaagct gtgcgtacct caacaccacc ggagacgagt      3780
     actggcagag tgccacgatg caccaacggc aggacacctt ggcatacgga agacgatcct      3840
     acgggtcgct tcgaagtact actggccagg gatgtatcga gatgtgaaaa ggtatgttca      3900
     aaactgtcaa acctgtcaaa ggttcaagtc cgaccaacag aagccggcgg gacggatgct      3960
     gtctcgtmga atagaagaac cctgttcgac atggtgtgcc gactttgtgg gacctttgcc      4020
     gaagtcgaag tcaggaaaca caatgttgtt ggttttcttc gacgcgtttg ccaaatgggt      4080
     tgagctcatc ccactcaaga gggccaccac cgcgacccta atcaaggcat tccgcgaacg      4140
     tattcttgga cactttgggg tcccacgcac gttcgtgtgt gacaacggca cgcagtttac      4200
     aagccgcgcc ttcaaagaat atatgcgaga actmggatgt gagttacagt atacggcgcc      4260
     atactcgccc cacgagaatc ctacggagcg tgcaaaccgc accgtcaaaa ccatgatcgc      4320
     gcaattcatc gaaggtgaac agtcaagttg ggacaacctt ctaccagaga tgacactggc      4380
     agtcaactct agtatctccg atactacaaa cttcagcccc attttcctga tgcaaggtcg      4440
     cgaaccaagg atgcccaagg cgctatacga agagaagaca cgagggaacg ggaacacccc      4500
     agaagatttc acaatcaaag cggccaagat gaaggaaata tttgaggtcg tcaaaattaa      4560
     tgcggagcgg gcgagtgccg accagatgcg ccactataac ctgagaagac gtgaatggcg      4620
     ccccgccttg ggctcgctcg tgttagtaaa acaacaccaa ctgtccagag gagtcgacgg      4680
     cttcgcggcg aaattggcgc cgaaatatga cggcccgttc cgggtcctta agtttatatc      4740
     gccgaacatc gtacggatcc agaggcccgg ggaacgtaag aggaaagtgg ccaacattgc      4800
     agagctgaga gaattccggg acgatgagac aggggaaggc gaagaagtaa cgtaaggtat      4860
     cactaactaa catcaagtat cttaagattg taattagata taaggcgttt attgtaagct      4920
     gcaccagtag gcagggaaat cttagggtca gttatataaa gtaagttatc tacccactac      4980
     agatactatg gaagaaggag agtcagactc cactcaagag tggaccggcg aagatggtga      5040
     gatggacgac ggtggatccg aatcggaaga cgttcctgtc gacctcaccc tggcggacac      5100
     ggaagatagc gacgaggagg ctgcgacggg agcagaaggg gacaacctat cgtactcgag      5160
     cgagctacca gacgagtcaa cccggggcac ctcacttggg agtacatccc cccggggcac      5220
     gtccccacgg tacgcgtctc cacggtacgc atctccccgg tatgcgtccc cacgctacgc      5280
     gtctccccag tatgcgtcac cccgctacgc gtcctggtac gaatctaacc cacgcttcgc      5340
     aacggaagaa tcacctccct cgacgtatag gccttttcct cgcgggcggt gtcagtcccc      5400
     tcatccagca tcctttgcca acctgggggg gcatatgtat gaaccccgac acgacgacta      5460
     ttcacctacc agaggtcgct cacgtgaccc cagacgaggg caaggcgtat accagcggac      5520
     aacagagacc acggtggacc gatacagcga attacaagag tccgaagaag aggaggatga      5580
     agacagcgag tggactgcca gcttcattag ggaacgagag gattaccact gggcgacaat      5640
     ccctggggga tatcgggtca cccaagtccg gcaggtgacg atggacataa ttccaccact      5700
     aggacaaggc cccgcgttcc ggtttgaagc aaactgcggc agaactcgtg caccccccct      5760
     ggccgcacga gcggcatgga gagaaggatg ccccaacgag aacacccagg tggcccggga      5820
     acccacgccc ccaccccagg aggtagacga caataccagg cagagtcgcg aggacaggcg      5880
     aagcacagga caggcggtaa atgacgaaca agatgccgct gagggaactg gagccgcacg      5940
     acgccgtcgg atacgcccgc ggaagtactg cacctgggac tccatcccgt ccgaggaaga      6000
     gcaagaggat gatcaaccgc tcctacggcg tagatacgct gagtcgtccg gggacgagtg      6060
     ggaagtttcc caagatacca gcttcccgac tctgagtctc cgacgacgca actctagagc      6120
     cgcgacgatt gagcccgagg aaccccaagc tataccggag gcagaacccg gaacagaggc      6180
     cggagtagag gacctggacg tgatcgattt cggcctggga ctggaaggcg tcgaagaggg      6240
     ttatgggtag aggagttgct tcaggacatc gaggcgtaga gcgagccgca accgagaccc      6300
     tcgacagacg ttgttggaag caccagagac ctggagggtc tacacgcccg gccgtatgct      6360
     cccggaggag ctagtggacg aattgtccag attcgtgcca caaggaccaa agagggaccg      6420
     cttcacccga gaagtcgacg gagacgtgta tcgagtgaca cggaatgtag atgctgaagg      6480
     gaaaacggcc ctgaccgtag tccttcgtcc tcccaagtaa ggggggg                    6527
//
ID   Gypsy-11_DRh-LTR repbase;    DNA;    INV; 1699 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DRh_;
KW   Gypsy-11_DRh-I; Gypsy-11_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1699
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1572-1572 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1699 BP; 537 A; 369 C; 389 G; 404 T; 0 other;
     tgctgtgacg gcgattccga cgccgccaca attattcccg atccccacgg aggggagaag        60
     gaaatatgcg tattttgtta ttactattat tgttatccct tttgattttt agctttaaga       120
     gaaaaacaat gaattaaata attagcataa taagcctagg cgaaaacaaa cataaataca       180
     ttattcaata agtggaaagg agagagaaga gcggggaaga gaggagagcg gggaagagag       240
     gcgagaccgg gaacaactcc tacgcagttg cctaaggaat tcaccccaaa aagagcatga       300
     gagagcagta aaccgaacga cctgaacgga gcgcaaagcc cacctcagcg actgcgcggt       360
     cgacgacaac ggagagcgag agggaatatc gaaaagcgag ctgggcagag cagagtagtt       420
     gctgttgcca aaaggagaaa agggagtcgc gaaattgaac ttcaccactg cgactgcgtg       480
     gtaagaaaat ggtgagatcg gaaaggccaa gggcacgaga acaaaaattg aaggaacgca       540
     agggactgac acgcgaacat cgaagccgga tagtcgtact tggagaaaac gagataagtc       600
     gcaattaggc agaccacgtg gtttttagtc ggtaagcgaa acggtacagt cgtgcagaat       660
     tttactggtg cagcgagaaa cgcgattaga tcgtaaaatt gtagaacgaa gattggtgaa       720
     ctcatgtgaa caagacgaaa aggcgaaaga agccaacagt gaataaagac aaataaaata       780
     atgaattata atttcgacaa cgagtgcgta ttcttttttc cctgaccttc gacccgtctc       840
     aatcaagccc gttgaataaa taaattaatt ataacaagtg ataataaccc taacctgaga       900
     atcgatcaaa cgtaacggaa ccgtaacccc gacgcgtaat taactaacat atcggccgtt       960
     aatagagtgg tatcgtagtt attaataaaa ccctgggtcc gcccgagttt tatcgtaatt      1020
     attaataaaa ccctgggtcc gcccgagttt tatcgtagtt agtataacga aaccctgggt      1080
     ccgcccgagt tttatcgtag ttattattaa agccctgggt ccgcccgagt tttaccgtaa      1140
     ttagtaataa aaccctgggt ccgcccgagt tttatcgtag ttattattaa agccctgggt      1200
     ccgcccgagt tttaccgtag ttattattaa agccctgggt ccgcccgagt tttatcgtag      1260
     ttattattaa aaccctgggt ccgcccgagt tatatcgtag taattattaa aacccagggt      1320
     ccgcccgagt tttactgtag tcattaatac ccacagagcc cgctcgaaag taccgtattt      1380
     agttgtaaaa tccaggggcc tacccaagtt ttactgtagc caaaccctgc ctcgaccaga      1440
     tttattgtag tcacagataa agcccatcac tgacataggt tcctacgata actgtttact      1500
     aagtccaggg tctgcccgag ctcagtaacc agtcttaggt ccagtcacgt accttttggt      1560
     gcggtttctt ctcctaatta taaagaccac gcctaaaact cactcgatta acccacatcg      1620
     tccactgtaa atttataaat aatttgtgga ggccctagcc aacccctgag catatcctgg      1680
     ctgggaaaac atccttaca                                                   1699
//
ID   Gypsy-11_DSer-I repbase;    DNA;    INV; 3823 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-11_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3823
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1987-1987 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1317..3170
FT                 /product="Gypsy-11_DSer-I_1p"
FT                 /note="ribonuclease H, and integrase."
FT                 /translation="MKPLYFLTSEKNKFNWKAEHEQIRKKVISILTDEPAL
FT                 VIFDPNYPIELHTDANCSGYDAILLHRINNKPQEIEYFSKTTSPAESRYHS
FT                 YELETLAVVNSIKHFRHYLLDRNFTVFTDCNSLKASRNKQDLTPRAQRWWA
FT                 FLQSFTFDIQYREGKRMAHVDFLSRNPIAPGSFAVKVVEEKRVNLAEISSN
FT                 WLIAEQRRDSDIAEIVNKLKDFSLAEDIAKTYELRAEILHRKIQRNGRTRC
FT                 LPVVPRAFRWSVINEVHESIMLLGFEKTLDKVYDFYLLDNISKYIKKFVEN
FT                 CITCKMSKLRSRKIQAELHPIPKVNITWHTIHIDITGKLSGKSDQKEYIIV
FT                 QVDAFTKYVYRSHTLKLDSDSCIEAVKSAVSFGVPNRIIADQGRCFTGAKF
FT                 SQFCSDQKINLHLIATGASRANGQVERTMSTLKNMLTAAETGIQSWQDVLG
FT                 EVQLAINCTTNRVTKASPLEMLLGKVSRPLGLLPPCDIENEVNLSNVRAQA
FT                 KKNIVSTAVYDKERFDKSKAKVRRHNVGDFVLLKNEERHQTKLNPKFKGPF
FT                 EITEVLEGDRYFLKSLTSKRTYKYAHEDLRKLPEGEVPEELNVFDDYNNEN
FT                 NENIENVENVEVIDEREVPQ"
XX
SQ   Sequence 3823 BP; 1342 A; 553 C; 817 G; 1111 T; 0 other;
     tcagaagtgg gatcggtcct caacctaata cattagttgg accatggcgt gtcatcatcg        60
     aactaccaaa tcaaaattta atcgaacttg tgcgagaaaa attaaaacaa caggtcctga       120
     tgcagaacaa agaaaagcta agtacaaagt tttctggtaa aagattgaat aatattgtta       180
     tgttaagagg cattgggagt aatggaatat gtagtactgt acaagttcta agtaacgtat       240
     gatacaaatt gataataatt atattgaaat tttgttttat gtaataggcg acgatcacat       300
     gcaaaacgat atcgtcattg gacgtgaaat actaaaacag ggttttgata ttgtcatttc       360
     attagacaaa tttacgattt caagagccaa aataattaat ttgtgagcca gctgatattg       420
     atacagaact tgacagagaa aataaaataa aactaaattc attgttggca aagtactcaa       480
     attgttttct caaaggaatt ccatgcacta aagttaaagt aggtaaaatg aaaattagat       540
     tgatcgatcc tagtaaaact gttcagagaa ggccataccg attaagtcca tgcgagcgat       600
     ttagttcgag ggaaaattga ggagctgttg aggtgtaata ataaggccaa gctgttcacc       660
     ttatgcaagc cctatactgt tagttaaaaa gaaaaatggt tcggacagac tctgcgttga       720
     ctatatagag ctaaattcaa acacagtggc tgataaatat ccgctgccac ttatatagga       780
     tcaaataaat agacttcgag gagttaatta ttttacgtgt ctagatatga ccggtggata       840
     ctaccaaatt cctatggatg ctgattctat agagtacaca gcgtttgtga cgctagatgg       900
     tcagtatgaa tttgtgtcta tgccattcgg gcttagaaat gcgccttctg tttttcaata       960
     attattaatt aattagtaat ccaggcgcta ggggattttg tcgaattctt atgttatcgt      1020
     gtatatggat gatattatga taactaccac aacattagag gaagcttttg aaagattgga      1080
     gattgtttta aatgttctga cagaggctgg attttcgttt aatattacaa agtgttcctg      1140
     cctgaaaaca tcggtgcaat atttaggctt aagtgtcagt gctggagaat tcgtccaaac      1200
     cctcagaaaa ttgtagcgtt aacagccctt atgcctccac aatctgtaac atcacttaga      1260
     caatttattg aattagcatc gtatttccgg cagtttatta ggggttttcg cagttaatga      1320
     aaccgttata tttcttaact tctgagaaaa ataaatttaa ttggaaagca gaacatgagc      1380
     agatacggaa gaaggttatt tctatactta ctgatgagcc agctcttgtt atttttgacc      1440
     caaattatcc aattgaactg catacagatg caaattgcag tggctacgat gcaattttat      1500
     tacacagaat taataacaaa ccccaggaaa tagaatattt tagcaaaaca acttcacctg      1560
     cagagtcaag atatcactcg tatgagttag aaaccttagc ggtcgtaaac tccattaaac      1620
     attttcgaca ttatttgttg gacaggaact ttacagtttt taccgactgt aactcattga      1680
     aggcgtcaag aaataagcaa gatttgactc ctagagcaca gcgatggtgg gcctttttgc      1740
     agtcatttac atttgatatt caatatagag aagggaaaag aatggcacat gttgactttt      1800
     tgtcgagaaa ccctatcgca ccagggtcct ttgctgtaaa agtagttgaa gagaagagag      1860
     ttaacttggc tgaaatttca agtaattggc taattgctga acaacgtcga gactcagata      1920
     tagccgaaat agtaaacaaa ttaaaagact tttctcttgc tgaagatatt gcgaaaactt      1980
     atgaactaag ggcagaaatt ctccaccgaa aaattcagag aaatggcaga actcgttgtt      2040
     taccggtggt gccgcgtgct tttagatggt ccgtcataaa cgaagtccat gagtcaatta      2100
     tgcttttagg tttcgaaaag acacttgata aagtttacga tttttatttg cttgataata      2160
     tatcaaaata cattaagaaa tttgtagaga attgcatcac ttgcaaaatg tcgaaattac      2220
     gttcaagaaa aattcaagct gaactgcatc caatcccaaa agtaaatatt acttggcata      2280
     ctatccacat cgacataaca gggaaattaa gtggcaaaag tgaccagaag gagtatatta      2340
     ttgttcaagt tgacgcgttt accaagtatg tctatcgtag tcatactctt aaactagaca      2400
     gtgacagttg catagaagct gtaaagtccg ctgtttcgtt tggagtacca aaccgaataa      2460
     tagccgacca aggaaggtgt tttacaggag caaagtttag tcaattttgt tctgatcaga      2520
     aaataaattt gcatttgatt gccaccggtg ctagtcgagc taatggccaa gtggaacgaa      2580
     caatgagcac gttgaaaaat atgttaacgg cggctgaaac gggaatacag tcttggcagg      2640
     atgtgctagg agaggtgcag ttagcaatta attgtacaac taaccgagtg acgaaggcaa      2700
     gtcctttaga aatgttattg ggaaaagtat caaggccgtt aggattactt ccaccttgtg      2760
     acatagaaaa cgaagttaac ctgtcaaacg tgagagcgca agctaaaaag aatattgtat      2820
     ctacagcagt gtatgataaa gaacggtttg ataaaagtaa ggcgaaagta cgtagacaca      2880
     atgttggaga ttttgtttta ctaaaaaacg aggaaaggca tcaaaccaag ttgaatccaa      2940
     aattcaaggg gcctttcgaa ataacagagg tattagaggg tgacaggtac tttttaaagt      3000
     cattaaccag taaacgaact tataagtatg cgcatgaaga tttaagaaag ttaccagaag      3060
     gggaagtacc cgaagagctg aatgtgtttg atgactataa taatgaaaat aatgagaata      3120
     ttgagaatgt tgaaaatgtt gaagttattg atgaaagaga agtgccccaa taagggtggc      3180
     aaagatatat tgtactgctg gccaaaggaa atggcagagt acttggatgg tgtaatgtaa      3240
     gcacaaaaat gaaatgtttg aaaagagaat gtaaagagac agtatcgtgg cctgagtgga      3300
     cgataatgag ataatgtaat attaatgtaa gcacaagtgc aaaataagct gatgtttgtt      3360
     ttgatcatgg cgtgtggtgc attagatatt tggaatattg aattgagtta aagagacagt      3420
     atcgtggcct gagtggacga taatgagata atgtaatatt aatgtaagca caagtgcaaa      3480
     ataagctgat gtttgttttg atcatggcgt gtggtgcatt agatatttgg aatattgaat      3540
     tgagttaaag aattggatta aagaaaaaga aaagaagaag tctgtatgtg tgaacatgaa      3600
     acataatttt tgaagacctg aagtattaaa gaaacccaaa cagaatggta atgtttatgc      3660
     taaagtttgt tttaagaaag tttgatacta ttttgataag ttgacattag ttaagaaaag      3720
     taaataggat tactcgaaat atttgtttaa attaatgaaa agggggcaaa agagaaacgt      3780
     tcagttactt atacacgagg tcgtgttaga gtcagtatgg ccg                        3823
//
ID   Gypsy-11_DSer-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-321
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1974-1974 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Inserted in (TA)n microsatellites.
CC   TSDs may be 4-bp long.
XX
SQ   Sequence 321 BP; 68 A; 77 C; 88 G; 88 T; 0 other;
     tgtcggcgaa tggatatacc attcgtatac cagcgtatgc agaatgctag ttcctggaaa        60
     gtttgtctta cgcggaactt tggcattctt ggttctattc tatgattggt cctcttagtt       120
     cgttgtggcg cgacacagct gcgctgttag ttcccttttt cacaggaatc gttatagcga       180
     ggcggcagcg tcgcgtcgct gtcgccgtgt gtggttcgaa ggcagttctt aggcagaacg       240
     atcgggcagt cttcagcgat cgtcagccag gaaagtcgaa actcactccg ctcgaaaatg       300
     gaacgcgacc atgactcgac a                                                 321
//
ID   Gypsy-11_DSim-I repbase;    DNA;    INV; 6547 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6547
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1527-1527 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           494..1870
FT                 /product="Gypsy-11_DSim-I_1p"
FT                 /note="Gag."
FT                 /translation="MQPTFSRYRNSKPYSTDSESDNENQASPLRCVTANPP
FT                 EMAIDPEQLKAVIQAIVANTLADEAAKNELARNEMRQKIQELASRLAAAHV
FT                 APTSAVAPVIRTYEPIDITNNSPCSMTLDAVKYLPEFSGSQESYVSWRQAA
FT                 IAAYRIFKDFNGTSRHYEAVTIIRNKVRGAANNVLSSFGTVLNFDAIINRL
FT                 DFTYSDKRPMHVIEQDMSTLRQGNNMTLLQYYDEVEKKLTLLTDKAHMSHE
FT                 PSAAKILCEKFREDALRIFISGLKRNLTDVLFAAKPKDMPSALALAQEVES
FT                 NHERYVFAASFAKSQEDKDRKPAAKTQGRQLDRYDHRDPQHYNTKNPYFSR
FT                 QHKAQVHADPQSAKNYKGNGTPEPMEVDPSFSKLLQPTQANAYQNRRPATS
FT                 ERTGAVRKQQKINFIMQNAEENTGAYAAAASKAASKIDDDAIAEYDSDYVN
FT                 FLGESPCYPSSDDE"
FT   CDS           4989..6545
FT                 /product="Gypsy-11_DSim-I_3p"
FT                 /note="envelope protein."
FT                 /translation="TLSPLPKARCFSFRIKVIGDGINLSEQEKATKKIHFH
FT                 RRRVFILLSLALVSAHITNYSQARYIPIIDGEILVWEELAYVTHSANLSEY
FT                 MRVIEETSSMNEMFPQSHMRRLLEVDTSHLRDTLDSLKVHHRIARSLDFLG
FT                 SMLKVVAGTPDAGDLERIRFTEWQLTQSNNRQIRINTRIQDRINQLTTTVN
FT                 QILQTHKNTQIDTGHLYETLLARNRILMMELQNLMLAVTLAKINIVSPNIL
FT                 DHADLKSVWLKEPTDTPIGDLMSASSVKILQSSNMIHFIIKFPKIKLSCKK
FT                 VTIFPVTCKGVMLRITDNMVAKCGEEVHTIKDCTPTPGATFCQLSTESSCA
FT                 RELHAGVLAHCESQPSDLHPLTRVGEGIIIINDRPARVTVDNGTEVYLRGT
FT                 HLITFNDRVVINATTFINHDKAQTRAPGVASSPSLNITANRDILSLPYLHQ
FT                 LSERNLEFIKEFGGEIDTNHSHRIILIAAAICCAMICIGITCLRFIGARRS
FT                 AIQLNGMIAELGPTEDGRNLEGG"
FT   CDS           join(1885..2262,2211..4922)
FT                 /product="Gypsy-11_DSim-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MNFLLDTGASKNFIRPRKELKNIRPVNTPFKIHSIHG
FT                 TTTVTKKCFVSIFDLKATFFILPDLTTFDGIIGADLLTQAGASLCLASAQL
FT                 KWGKEVEKISFHKCTDVNFTNVECADAPPLAKKAFLGMRGVRRCTTLGEEG
FT                 ISGDVRSRKNAFADPNEALPYNTSVVATIRTTSEEPIYAKLYPYPMGAADF
FT                 VNNEIQDLLKNGIIQKSVSPYNNPIWVVDKKGTDEAGNQNRRLVIDFRKLN
FT                 ERTIPDKYPMPDISMILGNLGKAKFFTTLDLKSGYHQIVLAENDREKTSFS
FT                 VNGGKYEFKRLPFGLRNAASIFQRAIDDILREQIGKTCYVYVDDVIIFSEN
FT                 ENAHVKHVDWVLKTISDANMRVSVKKSSFFKKSVNFLGFIVTSDGTTTDPE
FT                 KVRAIKEFPEPKTVFEVRSFLGLASYYRRFIKDFAAIARPISDILKGENGS
FT                 VSRHRSRHIQVQFDEAQKNSFEKLRNILASEDVMLRYPDYKKPFHLTTDAS
FT                 AYGIGAVLSQENRPITMISRTLKDREMNYATNERELLAIVWALAKLRHYLY
FT                 AVKDITIFTDHQPLSFSVSDSNPNAKIKRWKGRIEETGAKVVYKPGKENLV
FT                 ADALSRQQINAIEEQDAESCVATIHSEISLTHTIETTDKPLNCFQNQLVLE
FT                 EARFPLKRSFVLFKDKKRHAINFTDKESLLNDLADTIVPRGVNALHCDLHT
FT                 LATVQDELVRRFPTTKFWHCKNRVTDIFGVEERREIILAEHNRAHRSAQEN
FT                 VKQVLTEYYFPKMAKLANEIVQNCKTCAKAKYDRRPKKQEIGESPIPSHIG
FT                 EMLHIDIFSTDKKYFLTCIDKFSKFAVVQHVPSRTIEDLKPALLQVMNFFP
FT                 KAKVIYCDNEPSLKSHTITAMLDNHFGVSITNAPPLHSVSNGQVERFHSTL
FT                 LELARCLKIDKGLSDTVEIILVATTRYNKSIHSVTDKRPVDAIQEYTDGTQ
FT                 ERIADKIKRAQDALRSRENASRQNKVFEVGEKVLVKTNRRLGNKLTPLCEE
FT                 KTIQADLGTTVLIEGRVVHKDNLK"
XX
SQ   Sequence 6547 BP; 2075 A; 1560 C; 1436 G; 1475 T; 1 other;
     ggcgctcgaa ctagtggtag gaaccagcca aggaagccct ccacctccgg aggaaccatc        60
     acggatggca acaccgcaac acacagcgag aaatcgttam gaaatttacg acagcggcgc       120
     gggaaaagtg aagggaatta gtgatcaaac aaacacacct accaccagaa aaaaattatg       180
     tgagtgggaa ccgctgctaa atgcatttta agtctgcaca gcaaacgtaa atttttagta       240
     ataaaataaa gtaataagcg gcgaggtaac actgaaacat ggtctcgtgt caacgggaat       300
     aaaaaaacaa tataattatt cttcataaca gcgcatacgt tcatttgtta ttgttgtttt       360
     tgtttccgtt cgatgtaagc gcgacattcg acgctgcagt ctttgtcttt attttttttt       420
     tgttgttgtt tgtctttggt caactgctac ccacacaggc agcttttgca tacctaagcg       480
     agttggactg ctcatgcagc ccacattctc acggtatagg aatagtaaac cgtactccac       540
     agactcagag tctgataacg aaaatcaagc ttcccctcta agatgcgtaa ccgcgaatcc       600
     ccctgaaatg gcgatagacc cagaacagct caaagctgta atacaggcaa ttgtggccaa       660
     tactttggcg gacgaagctg ccaaaaatga actcgcgcga aatgaaatgc gtcagaaaat       720
     tcaggagctg gccagccggt tggcagcagc acatgtcgcg cccacctcag cagtggcccc       780
     cgttattaga acatacgagc ccatagacat aactaataat tccccatgta gcatgacttt       840
     agatgccgtt aaatatttgc ctgaattctc gggatcacag gaatcgtatg tttcgtggcg       900
     acaagcggcg attgctgcgt atcgcatatt caaagatttc aacggcacct ctcgccatta       960
     cgaggcagtg acaattatta ggaacaaagt taggggcgcg gccaataacg ttttatcctc      1020
     gtttggcact gtactgaatt tcgatgctat tataaatcgg ctcgatttca cttacagtga      1080
     caagcgtcca atgcatgtca ttgaacagga catgagcact ttaagacagg ggaacaacat      1140
     gaccctgtta caatattatg atgaggtcga gaaaaaactc accttactca cagataaagc      1200
     tcatatgtcc cacgagccat cggcggcaaa aatattgtgc gaaaagttcc gagaggacgc      1260
     cttgcgtatt ttcatctcgg gacttaaacg caacctcact gacgtgcttt tcgcggcaaa      1320
     gccgaaagac atgccgtcag ctttggcctt agcacaagaa gtggaatcta accacgagag      1380
     gtacgttttt gcagccagtt ttgcaaaaag tcaagaagac aaagatcgca aacctgctgc      1440
     aaaaacgcag ggtcgtcaac ttgacaggta cgaccaccgt gacccacaac attataacac      1500
     caaaaaccca tattttagta ggcagcataa ggcacaggtg cacgccgacc cgcaaagtgc      1560
     aaaaaattac aaaggcaacg gcacaccaga gcctatggag gtcgatccat cattttctaa      1620
     attgctgcag ccgacccagg caaatgccta ccagaacaga agaccagcca cctctgagcg      1680
     cacaggcgct gtgaggaaac aacaaaaaat taacttcatt atgcagaatg cggaagaaaa      1740
     cacaggagca tatgccgccg ccgcctccaa agcggcatcg aaaatagacg acgatgccat      1800
     tgccgagtat gattctgact acgtcaattt tttaggggaa agtccctgtt acccgtcatc      1860
     agacgacgag tagcgggggt accaatgaat ttccttttag acaccggcgc gtcaaaaaat      1920
     ttcatccgac ctcgcaaaga gctaaagaat atccgcccgg tgaacacccc tttcaaaatt      1980
     cactcaatcc acggcaccac caccgttaca aaaaaatgct tcgtctcaat ttttgattta      2040
     aaagcgacct ttttcattct accagacctt acaacattcg acgggataat cggggccgat      2100
     ctgttaacac aggccggtgc atcactttgc cttgcttccg cccaactcaa gtggggtaag      2160
     gaagttgaga agatttcatt ccataaatgc accgacgtca acttcactaa cgtggagtgc      2220
     gcagatgcac cacccttggc gaagaaggca tttctgggga tgtaaggagc cgaaaaaacg      2280
     ccttcgcaga tcccaacgag gccctgccat ataacacatc ggtagtggcc acgataagga      2340
     cgactagcga agagcccatt tacgcaaaat tatatccata cccaatgggg gcagcagatt      2400
     tcgtcaacaa cgaaatccaa gacctgctta aaaatggcat aattcagaag tcggtgtctc      2460
     cttataacaa cccaatatgg gtggttgata aaaaaggaac cgacgaggcc ggcaatcaaa      2520
     atagacgatt ggtcatagac tttcgtaaac taaacgaaag aactatcccg gacaaatacc      2580
     cgatgccaga tatctccatg atactgggca acttgggcaa ggccaaattc tttacgacat      2640
     tggacctcaa gtccgggtat caccagatcg tcttagcgga aaatgaccgc gaaaaaactt      2700
     ccttctccgt aaacggaggg aagtacgaat tcaagagact tccctttggc ttgagaaatg      2760
     ctgccagcat cttccagaga gccattgatg acattctcag agaacaaatc ggcaagactt      2820
     gctatgtcta cgtcgacgat gtaataatct tctcagaaaa tgagaatgct catgtcaagc      2880
     acgtggattg ggttttaaaa accataagcg atgcaaatat gagagtctca gtaaaaaagt      2940
     caagtttttt taaaaaaagc gttaactttc tcggctttat agtcaccagc gatggcacta      3000
     ccaccgaccc agagaaggtc agggccataa aagagttccc tgaaccaaaa acagtatttg      3060
     aggttaggtc gttcctaggt ctcgcgagct attacagacg cttcattaag gactttgcgg      3120
     ccatagcaag gcctatttcc gatatcttaa agggcgaaaa tggaagtgta agcagacata      3180
     ggtcgcgaca catccaagta caattcgatg aggcgcaaaa aaattctttt gaaaaactgc      3240
     gcaacatttt ggcatccgaa gatgttatgc tcagataccc ggattacaag aagccattcc      3300
     atctaacgac ggatgcttca gcctacggta ttggcgcagt tctttcacaa gagaaccgtc      3360
     ctattacaat gatctcgagg acattgaagg atagggaaat gaactacgcc acaaacgaaa      3420
     gggaattatt agccatcgtt tgggcgttgg ccaagctgcg acactattta tatgcggtga      3480
     aagatataac tatcttcacc gaccatcagc cattgtcatt ctcggtatca gattctaacc      3540
     ctaacgcgaa aattaaaagg tggaagggtc gcatcgagga aacgggtgcg aaggtagtct      3600
     ataaaccggg aaaagaaaat ttggttgctg atgccctatc taggcagcaa attaatgcca      3660
     tagaagaaca ggacgcagaa tcatgcgttg cgaccattca cagtgagatt tccctcaccc      3720
     acaccataga aacaacggat aagcccctaa actgcttcca gaaccaacta gttctagaag      3780
     aggcccgctt tccgctgaaa cgctctttcg ttctcttcaa agacaagaaa cgacacgcga      3840
     tcaacttcac cgacaaggag tcattactca atgaccttgc ggatacaata gtccccaggg      3900
     gcgtaaacgc cctccattgc gatttgcaca cgctagcaac ggtgcaggac gaattagtcc      3960
     ggagattccc gactacaaaa ttctggcact gcaaaaaccg tgttacagac atttttgggg      4020
     tcgaggaaag aagggaaatc atattagcag aacacaatag ggcccaccgg tcggcccagg      4080
     aaaatgtgaa acaagttctc acagagtact acttcccaaa aatggccaaa ctggccaatg      4140
     aaattgtcca aaactgcaaa acatgcgcga aagccaaata tgataggcgt ccgaagaaac      4200
     aagagattgg cgagtcaccg attccctctc atataggaga gatgctacac atagacattt      4260
     tctcgacgga taaaaaatat tttctcactt gcattgacaa gttttcgaaa ttcgccgtcg      4320
     tacagcacgt gccgtcaaga acaattgagg atttgaaacc ggccttgtta caggtcatga      4380
     atttcttccc aaaggccaaa gtgatttact gcgacaacga gccatcgtta aaatcgcaca      4440
     cgatcacggc catgctagac aaccatttcg gcgtcagcat caccaatgcg ccaccccttc      4500
     acagtgtatc aaacgggcaa gtggagcgtt ttcacagcac tctactggag ctcgccaggt      4560
     gcctaaaaat tgacaagggc ttaagtgata ccgtggaaat aatcttggta gccactacca      4620
     gatataacaa atcaatccat tcggtcaccg ataagaggcc agtcgacgca atacaagaat      4680
     acacggacgg cacacaagaa cggattgctg acaaaattaa gagggcccag gacgcgctaa      4740
     ggtctaggga gaatgcttct cgacaaaaca aagtcttcga agtgggcgaa aaggttttgg      4800
     tcaaaactaa cagaaggctt ggcaataaac tcactccctt gtgtgaggaa aaaaccatac      4860
     aagcagacct ggggaccacg gtcctcattg aagggagggt ggtccacaag gacaacttaa      4920
     aatgactctc tcgcttaatt ttaaattttt tattatcacc agccatttgg caaacttcca      4980
     tttagtagac attaagtccg ttgccaaagg cgcgatgttt tagttttagg ataaaagtaa      5040
     ttggtgatgg gataaacctc agcgaacaag aaaaagcgac taaaaaaata catttccaca      5100
     ggcgcagagt tttcatcctc ctctcactgg cattggtgtc agcgcacatc actaactact      5160
     cacaggcaag gtatatcccc atcatagatg gagagatcct ggtgtgggag gagctcgcgt      5220
     atgtgaccca ctcggcaaat ctttcggaat acatgcgcgt aatagaagaa acaagcagca      5280
     tgaacgagat gtttccacag tctcatatga ggagattgct agaagtggat acctcgcacc      5340
     ttcgagatac gctggattcg ttgaaagtcc accatagaat cgcaaggagt ttagattttc      5400
     taggctcaat gctaaaggta gtagcgggga cgccggatgc cggcgatcta gaaagaatta      5460
     gattcacaga gtggcagttg acacaatcaa acaataggca aatcagaatt aatactagaa      5520
     tacaagatcg aattaaccaa ttaacaacaa ctgtaaatca aatcctacaa actcataaaa      5580
     atacccaaat tgacaccggc catttatacg agacactgct ggctaggaat agaatactaa      5640
     tgatggagtt acagaattta atgttggctg taacactggc gaaaatcaat attgtcagtc      5700
     caaatatcct agatcatgca gacttaaaat cagtttggct gaaagagccc acagataccc      5760
     ccatagggga tcttatgtcc gcatcgtccg ttaaaatact acaatcctcc aacatgatac      5820
     acttcattat taaattcccc aaaataaaat tatcttgtaa gaaggtcact attttcccgg      5880
     tcacttgcaa aggagttatg ctgcggataa ctgacaacat ggtggcaaag tgtggagaag      5940
     aggtccatac aatcaaagac tgcaccccaa caccgggggc taccttttgc caactatcaa      6000
     cggaaagctc atgcgccagg gaactacacg caggcgtcct agcgcattgt gagtcgcaac      6060
     caagcgacct acacccgctt acccgcgtgg gtgagggaat catcatcatc aatgaccggc      6120
     cagccagggt cacggtggac aacggaacag aagtctacct acgtggcaca catctcatca      6180
     ccttcaacga tcgtgtcgtg ataaacgcca ccaccttcat aaatcacgac aaggcccaaa      6240
     caagagctcc aggggtagct agttccccat cattgaatat caccgccaac agagatattc      6300
     tgagtctccc ctaccttcac cagctgagtg aacgtaactt ggagttcatc aaagagttcg      6360
     ggggagaaat tgatactaac cattcacatc gcataatact catcgcagca gcgatttgtt      6420
     gtgcaatgat ttgtatcggc atcacctgtc tacggttcat cggagcgcgt agatctgcaa      6480
     tccaactaaa cgggatgatc gctgagttag gaccaaccga ggacggccgg aatcttgaag      6540
     ggggagt                                                                6547
//
ID   Gypsy-11_DSim-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-340
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1528-1528 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 340 BP; 107 A; 73 C; 69 G; 91 T; 0 other;
     agttaacaca agccaacgta ctagaacagt tggcccagtg tgcgaaatat gatataaaaa        60
     cgtcaaaagt gctgacccgg cattgggccg gaaacctgtg cgcagacggc aatcacagca       120
     tatttgcgtg gccgctgcga ttcttttgtt agctttaaga atcattttat atttcagttc       180
     gattttgaag cctcattaga ataaagagca caagctcata tgagaacaac tccggcaata       240
     gccgttaaaa ttcttttatt aaaataaaac tgactgagtc actaggccgg cagttgaaga       300
     agggtagtcc ccctcaacgt ccatcataat cttcttaatt                             340
//
ID   Gypsy-11_DTa-I repbase;    DNA;    INV; 5987 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DTa_;
KW   Gypsy-11_DTa-LTR; Gypsy-11_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5987
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1616-1616 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2029-2490] - Reverse transcriptase
CC   Positions [3724-4197] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1231..4572
FT                 /product="Gypsy-11_DTa-I_1p"
FT                 /translation="MIKGKLLRAMIDTGSSINIMTQNFGNNEEQDEKLKVF
FT                 TINGSMELNKSITLDPCKICPVKQKFYLHKFSENYDILIGRDYLKESKAKI
FT                 NYEEETVTLGDTLLYIKYGENDVGKDKTAVKCLSPPSVKKEIEEDKTALEC
FT                 LNPPLSKDQSFNFAINNELKECNEYRLEHLNEEEKENLKKVLFEYNDIQYK
FT                 EGENLTFTSTIKHSIQTKHEDPVYRKPYKYPQTFDEEVNKQINEMIEQGII
FT                 RKSKSPYCSPIWIVPKKSDASGKMKFRLVVDYRNLNEITINDKFPIPRMDE
FT                 ILDKLGRCQYFTTIDLAKGFHQIQMEPESIAKTAFSTKHGHYEYTRMPFGL
FT                 KNAPATFQRCMNNLLEDLIYTDCLVYLDDIIIFSTSLEEHILSLKKVFQKL
FT                 RDANLKLQLDKCEFMKKETEFLGHVVTTTGIKPNPQKISAIINFPIPKSPK
FT                 EIKSFLGLCGFYRKFIPDFAHIVKPMTVKLKKGATINTKDKPYIEAFEKMK
FT                 VLITSDPILIYPDFNKPFSLTTDASNMAIGAVLSQNHKPICYASRTLNEHE
FT                 INYATIEKELLAIVWATKYFRSYLFGRSFEILSDHKPLVWLNNIKEPNMKL
FT                 QRWKIKLNEFDYQIKYLPGKENYVADALSRTKIGENMFTDDIEENVLEETA
FT                 SSGNATAHSAQEDNQNYISITERPFNYFSRQIEVIKGDEDKTEVTHYFHKL
FT                 KIQIIYKEMTETLAKEIIKEYLCTKKSAIYFHNDSDFLIFQKAYVEIINAS
FT                 HLTKLVRCTARLEDILTYADFKEKILKRHKDLLHPGIEKTTKWFREKYYFP
FT                 DYQKLIQNIINECEICNIAKTEHRNTKLTFELTPEIQNIREKFVMDFYMVG
FT                 NQQFLSCIDVYSKFATLVEVTSRDWLEAKRAIMKVFNEMGKPQEIKADKDS
FT                 AFMCVALHNWLNSEGVQIQVTTSKNGISDVERFHKMVNEKLRIIGSEPDIE
FT                 NRYTKFELILYIYNHKTKHNATNQVPANIFMYAGTPDYDTQEKKINRIEKL
FT                 NEKRHDYEIDTKYRQAPLVKSKTTNPFKKTGTLRKIDEKHFEETNRGRKII
FT                 HYKSKFKKKKKINKSKYDDNSRQAEENERTQQQQLNENNDLLHNTNNYNST
FT                 NNRAEH"
FT   CDS           4454..5926
FT                 /product="Gypsy-11_DTa-I_2p"
FT                 /translation="MIIPGKQKKMNGPNNNNLMKTMTFSIILTTIIQLTIG
FT                 QSIEINPIKAQNGYLVFKTGSIDIPINYEYHYLSVNITKTEQTFESLLKEA
FT                 NEFNDVIQIRYLVEKLKREINGITLAKRSKRGLFNIVGSVYKYLFGTLDQD
FT                 DKDEMEEKINNLVDTSVQNTDLNMIIDVINNGIEVINKLKADGEREQQASV
FT                 LIFNLQHFTEYVEDIELGMQLTRLGLFNPKLLKHDYLKNVNPEKLLKIKTS
FT                 TWLKTDTNEILIISHIPSEIVKSPVFEIIPYPDESNNILTENIFDKYFLYE
FT                 DKVFNKETGKIVFDECINGIIKQENTECKYTKTYKNFQINYVEPNILLTWN
FT                 IPKTLLNQNCINKEISIVGSNLVKILNCSVQLDEFTLSNTMLDYTQSVYVN
FT                 NNVTKLEPLSYIQTKEIIESHTKYYNVFQIITLTTFVIIIISILLYLLYKF
FT                 KSIPRKLIVKYVKPKEDTQKSTEIVNDLPRQINIEENVMLYPTLST"
XX
SQ   Sequence 5987 BP; 2514 A; 957 C; 943 G; 1573 T; 0 other;
     ttttattggc gcagccggta ggatcttgaa gtcattttaa aagtcatcgg tactgatcaa        60
     ctaaaggata ttactatacg actagtttgt cctgatcagc gaaaaatccg tgaatataca       120
     aaacgacaaa tatcgagatc cgctaaagaa tctatgtgta attttcgcac gcagaaacta       180
     aaataaaaat ccaattcggt caatacgcgc ttgaaattta aaaagtgtca atattgaaaa       240
     caaaatataa aacattaaac atggcaaacc caccagtgct accgcagttg tctgagctgc       300
     atctgaatca gcttatcgga caaatcaaag agctacctta tttcgacggc aacccatcgg       360
     aattaagtcg ctatattgcc agagtagagt acttactgca actttaccct actcaagatg       420
     ttcgccaaac ccacatcatc tatggagcca ttgagaggac catcgtcgat tccgcgcaag       480
     cagtgatcga ggaggaaaag tcgaacacat ggggaacagc aaaagtggcc ctaattaaag       540
     ctttcaagga tcacaggcca tacgaggaca tcatacagca cgttcgtgac accccatacc       600
     aaggaagcat cagtaagttc gtaaacgaac taaaatccag atcatcaaat gtacacaata       660
     agttagaact agaatcagat ccaacagaca agctaattta cacaagttcc ttaaaaaaac       720
     aattagggat tgtatcgaaa gaaaacttcc tgatagattg tatacttcct tgtccaaaaa       780
     agatataaca acagttgcca atctaaaaga agcagcaatg attctaggtc actgggatgc       840
     agaccctttt gataattata aacccaggcg caacgatagt cgaaggaatt cgggaaatac       900
     acatcaaaat tattattatc aaaggaacaa ttcccactcc tatagttatc caagaaacaa       960
     caataataat tcaaattcaa caacttctca aagttcacca aatagaaatc aaattccccc      1020
     tcaaaatcag ggaaattatc aagagtgtag gaggaactta gatcaaggta gggcccaaaa      1080
     ccccttaaac ttccaagcat caacttccaa taattctccg aatacacctg ttaaaagaca      1140
     aagagagagt gacagtgcac agaatagaat ggacgtaaat tttcagcaaa ctgcctcgga      1200
     tacagaaagt gttgcccata tgtcagagta atgattaaag gaaaacttct tagagctatg      1260
     atagatacag ggtcatctat caatataatg acgcagaatt ttggaaataa tgaggaacaa      1320
     gatgaaaaat taaaagtatt cacaataaat gggtcaatgg aactaaataa aagtattaca      1380
     ttggatccat gtaaaatctg tccagttaaa caaaaatttt atttacataa attttctgaa      1440
     aattatgaca ttttaatagg tagagattat ttgaaagaaa gtaaagcaaa aataaattac      1500
     gaagaagaaa cagtgacgtt aggagataca ttactttata taaaatatgg tgagaacgat      1560
     gtaggaaagg acaagaccgc agtaaaatgc cttagtccac catcagttaa aaaggagatt      1620
     gaagaggata agaccgcatt agaatgcctt aatccgccct tatcaaagga ccaatcattt      1680
     aattttgcca ttaataatga attaaaagaa tgcaatgaat acagattaga acatttgaat      1740
     gaggaagaaa aagaaaattt aaagaaagtt ttatttgaat acaatgacat acagtacaag      1800
     gaaggtgaga atttgacttt tacaagtact attaaacatt caatacaaac aaaacatgaa      1860
     gacccagtat ataggaagcc atataaatac cctcaaacct ttgatgaaga agttaataaa      1920
     caaataaatg aaatgattga acagggaata attcgtaaat caaaatctcc ctattgttca      1980
     cccatttgga tagttccaaa aaagagcgat gcatcaggca aaatgaagtt tagattagta      2040
     gtggattaca gaaatttaaa tgagatcact atcaatgata aatttccgat acccagaatg      2100
     gatgaaatat tagacaaatt gggaagatgt caatatttca ctaccattga tttagccaaa      2160
     ggattccatc aaattcaaat ggaaccagaa tcaatagcta aaacagcatt ctcaacaaaa      2220
     cacggtcatt acgaatacac acgaatgcca tttggtctta aaaacgcccc cgccactttc      2280
     caaagatgta tgaacaattt attagaagat ttaatctata cagattgttt ggtatatcta      2340
     gatgatatta taattttttc cacttcattg gaagaacaca ttttatcatt gaaaaaggta      2400
     tttcaaaaat tacgtgatgc aaatttaaaa ttacaactag acaaatgtga attcatgaaa      2460
     aaggaaacag agtttttagg tcacgtagta actactacag gtattaaacc aaatccacaa      2520
     aagataagtg ccattataaa ttttccaata ccaaaatctc caaaagaaat taaatcattt      2580
     ctaggattgt gtggatttta tcgaaaattc ataccagact ttgcacatat cgtaaagcca      2640
     atgacagtga aattaaagaa aggcgccaca atcaatacta aagacaaacc ttacatagaa      2700
     gcatttgaaa aaatgaaagt tttaattacc tcagacccaa ttttaattta tcccgacttt      2760
     aataaaccat tttctctaac aacggacgca agtaacatgg ctataggagc agtactgtca      2820
     caaaatcata aaccaatctg ttatgctagc agaactctta acgagcacga aataaattac      2880
     gcgactattg aaaaagaact tttagcaatc gtatgggcta ccaaatattt tagatcatat      2940
     ttattcggta ggtcatttga aatattaagc gaccataaac ctttagtctg gctgaataat      3000
     ataaaagaac caaatatgaa actacaacgg tggaaaataa aattaaacga atttgattat      3060
     cagattaaat atttgccagg taaagaaaat tatgttgccg acgctttatc caggaccaaa      3120
     ataggagaaa atatgtttac agatgatatt gaggaaaatg tactagaaga gacagccagt      3180
     agtggaaacg caacagcaca cagtgctcaa gaagataacc agaactatat ttctataacc      3240
     gagagaccat ttaattattt ttcccgacaa attgaagtaa ttaaaggaga tgaagataaa      3300
     acagaagtaa cgcattattt ccacaaatta aaaattcaaa ttatttataa agaaatgacg      3360
     gaaactttag caaaagagat aattaaagaa tacctatgta ccaagaagag cgcaatatat      3420
     ttccataacg attcagattt ccttatattc caaaaagctt atgtggaaat tataaatgca      3480
     agtcatttga cgaaattagt aagatgtacg gcaagacttg aagacatact gacatacgca      3540
     gactttaaag aaaaaatatt gaaacgacac aaagacctct tacatccagg aatcgaaaaa      3600
     actactaaat ggtttagaga aaaatattac ttccctgatt atcaaaaatt aattcagaat      3660
     ataataaatg aatgtgaaat ttgcaacatt gctaaaacgg aacatagaaa taccaaattg      3720
     acattcgaac ttacaccaga aattcaaaat ataagagaga aatttgtcat ggatttttat      3780
     atggtgggta accaacaatt tttatcatgt atcgacgttt actcaaaatt tgctacttta      3840
     gtagaagtca caagtaggga ttggttagaa gctaaaagag ctatcatgaa agtatttaac      3900
     gaaatgggaa aaccacaaga aatcaaagca gataaggatt cagcatttat gtgtgtagct      3960
     ttacacaatt ggttaaactc agaaggagta caaattcaag taacaacaag taaaaacggt      4020
     atatcggacg tagaaagatt tcataaaatg gtaaatgaga agctgagaat cataggaagt      4080
     gaaccggaca ttgaaaacag gtataccaaa tttgaattaa ttctgtatat ttataatcat      4140
     aaaacaaaac ataatgctac aaatcaagta ccagccaaca tatttatgta tgcaggaacc      4200
     cctgattacg acacacaaga aaagaaaata aatagaattg aaaagcttaa tgaaaaacgt      4260
     catgattacg aaatagacac aaaatataga caagcacctt tagtaaagtc caaaactaca      4320
     aatccattta agaagacagg aaccttgaga aaaattgacg aaaaacactt tgaggaaaca      4380
     aataggggaa gaaagattat tcattataaa tcgaaattta aaaagaagaa gaaaattaat      4440
     aaaagtaaat acgatgataa ttccaggcaa gcagaagaaa atgaacggac ccaacaacaa      4500
     caacttaatg aaaacaatga ccttctccat aatactaaca actataattc aactaacaat      4560
     cgggcagagc attgaaataa accccattaa ggcccaaaat ggatatcttg tatttaaaac      4620
     aggatcaata gatatcccga ttaattatga atatcattat ctaagtgtaa acataacaaa      4680
     aactgaacaa acttttgaaa gtcttttgaa agaagctaat gaatttaatg acgtaataca      4740
     aatccgatat ctagtagaaa aacttaaaag agaaattaac ggaattacat tagcaaaacg      4800
     cagtaagaga ggtttattca atattgtagg atcagtatat aaatacctat tcggaacatt      4860
     agaccaagat gataaagatg agatggaaga aaaaattaat aatttagtag atactagtgt      4920
     tcagaacaca gatttaaata tgattatcga tgtcataaat aatggaattg aagtaatcaa      4980
     taaattaaag gcagacggag aaagggaaca acaagccagc gttttaatat ttaatttaca      5040
     acactttaca gaatacgtag aagatatcga attagggatg caactgacaa gattaggttt      5100
     attcaatcca aaattattaa aacatgatta tttaaaaaac gtgaaccctg agaaattgtt      5160
     gaaaatcaaa acttccactt ggcttaaaac agacacaaat gaaattttga tcatttccca      5220
     tattccttca gagatagtta aatcgcccgt ttttgaaatt attccttatc ccgatgaaag      5280
     caataatatt ttaacagaaa atatattcga caaatatttc ttatacgaag ataaagtatt      5340
     taacaaagaa acaggaaaaa ttgtatttga cgaatgtata aatggaataa ttaaacaaga      5400
     aaatactgaa tgcaagtata ccaaaacata taaaaatttc caaattaatt atgttgaacc      5460
     aaatatttta ttgacatgga atatccctaa aacattatta aatcaaaatt gcattaataa      5520
     agaaatttct atagttggaa gtaacctcgt taaaatcctt aattgttcag tacaattaga      5580
     tgaattcact ctttcaaata caatgttaga ttacacacag agcgtttacg taaataacaa      5640
     tgtgacaaaa ttagaaccat tatcttatat tcaaacgaaa gagataatag aatcacacac      5700
     aaaatattat aatgtattcc aaataatcac tttaacaact tttgtaatca ttattataag      5760
     cattttattg tacttattgt ataaatttaa gagcatacca agaaaactta ttgtaaaata      5820
     tgtaaaacca aaggaagata cacaaaagag tacagaaatt gtaaatgatc taccaaggca      5880
     aattaacata gaagaaaatg taatgctata cccaacacta tccacctgag gacaggccaa      5940
     attcaaagaa tgggggagtg acatatccat agttccacat aactcta                    5987
//
ID   Gypsy-11_DTa-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   17-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DTa_;
KW   Gypsy-11_DTa-I; Gypsy-11_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-491
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1617-1617 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 491 BP; 182 A; 111 C; 69 G; 129 T; 0 other;
     tgcacatgtc catacgccca cacacttaca cacacataca ccatcccaga attcaccctt        60
     cagataacct tagtacgcca ccagccaata tctaattgca aatgtaccca ggctttagac       120
     taaacatcca gaacgaatca aattacgtta tcagttcgtt cccacacttt tcggaccctc       180
     aatggaaaat taccatgaga aagaatcccc aaaagattta gactaaacaa tcggattgag       240
     tcgccggtgc attatcaatc aacaatccaa agggcaattt taaaactcac tcaattaaag       300
     ctaactccac tcatagaaag ctctaaagct cagaaccgag gtatgatcat caaagaagtt       360
     taagttaaga agcgagttca gtttgagact tgtctaaaga cagtcggtgt tcttccaaat       420
     aaaaaatatt gtaaccagtt taaaattaaa ttaaataaag ttttttttat attaaactta       480
     tggtgcaaac a                                                            491
//
ID   Gypsy-11_DVir-I repbase;    DNA;    INV; 6553 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   06-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DVir_;
KW   Gypsy-11_DVir-LTR; Gypsy-11_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6553
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1822-1822 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4701-5177] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           751..2241
FT                 /product="Gypsy-11_DVir-I_1p"
FT                 /translation="MLPLRSPQNVQPSSERADNHCVLCQLVMDNTQSCYCT
FT                 PCRHVFHKLCLEGWLVNHAKCPSCSAVIDPASIKLVVGDCSPRGKQSAPPP
FT                 PTNIGRTVTRSLAKSLNPGPTQSGENPTARLLDVSDVPQSGLDASNSTNPP
FT                 EIAPARPAPGVRRRGRPTQSNNTRQNLGVDYRIIQEMIEQSITRVMSSLQI
FT                 QATPFPRVLPTPIPVSPSSSSFRNGKIADTMQKWNLNFDGSTEGLGVEEFL
FT                 YRVKTLTDETLDSDFMGLCKHLHVLFLGKARDWYWRYHKQVDHIVWTEFCT
FT                 ALRHQYKDYRSDFMSKELVRARKQNPGESFVSFHDAVASLIDKFAIKIDEE
FT                 ELIEILKNNLLPETRHKLLYQPISSVGHLRRLVQMNENLVHELSCRTDGMN
FT                 KSRTIGRRQVYGLEESFIEPEVENSEDTNFDIAAIRRCHANFKCWNCEEQG
FT                 HLWENCLADRRIFCYGCGAPNIYKPQCQNCIRKASENQQKGASSSSRMPPK
FT                 I"
FT   CDS           2529..5546
FT                 /product="Gypsy-11_DVir-I_2p"
FT                 /translation="MRSYAEVSFLTFTELGLLDTGANISCIGSTLAQQDFT
FT                 AMPEFKPIKSHVRTADGHSQKVIGVLEVKMQYKSATKSLKLYVIPSINQNL
FT                 ILGHDFWRAFELAPSIINSVELKSMEKEQETESIAYPLDSQQTQQLHVVKQ
FT                 LFPNAADRLGRTTLIQHRIDIGDARPVKQRFYPVSPAVEKLLYAEIDRMLQ
FT                 LGVIEPSVSAWSSPMRLVLKPNKVRLCLDARRLNDATKKDAYPLPSIDGIF
FT                 SRLPKANIISKLDLKDAYWQIELSEDSKPLTAFTVPGRPLYQFKVMPFGLC
FT                 NAPSTMCRLMDEIIPSDLRYCVFGYLDDLCIVSEDFSSHLAVLVRIAEQFR
FT                 KANLTLNISKSQFCVTSINYLGYVIGSGGICTDPEKVACIVNWPPPKNLKQ
FT                 VRGFLGVCGWYRRFICNFSDLTCPITDILSTKKKFEWTPEAQTAMDNLKTV
FT                 LTSSPVLKNADFKKKFFLHCDASDFGIGAVLVQMSEDNEEQPIAFMSKKLS
FT                 RAQRNYSVTERECLAVILAIEKFRCYLELQEFEVVTDHSSLLWLMRQQNIS
FT                 GRLARWVFRLQQFKFSVSHRKGKEHIVPDALSRLPENEIAQLDMGPVIDLE
FT                 SDTFMDASYVQIKDKFSQNFTQFPDIKIVDKFLYVRTEHSRGDSTPESPSW
FT                 KLWVPDRLKVDVLKQAHDSITSSHAGMQKTIEKIRRHLFWPGLVKDVREYI
FT                 RNCEICKETKAPNYTLRPPMGAHIPTCRPFQRLYIDLLGPYPRSKSGHVGL
FT                 LIVLDHFSKYHWLQPLKKFTSAVIQKFLLEQIFHCFGVPQTIISDNGTQFK
FT                 AREFNAFLAELGIEHLYTALYSPQSNAAERVNRSILAAIRSYLKQDQTHWD
FT                 EHITGISCSLRSALHQSIGCSPYRALFGVDMITHGTDYKLLKELSLLEEPL
FT                 VPLLRSDHLALLRTDIQKNIRKAYERNAAQYNLRSKPVSFREGQEVFCRNF
FT                 ALSKFSHNFNAKLAPQFIKCRVKKKLGNCFYSLENQQGKEIGTFHAKDIRV
FT                 "
XX
SQ   Sequence 6553 BP; 1980 A; 1392 C; 1359 G; 1822 T; 0 other;
     taaatttttg gcgcccaatc gtggggcccg aggttgtcta taaaaaaaaa aaaaaaaaaa        60
     aaatgagtct ttatattatt gtccacgcac gctgacgtcg atgtgactgg tttagtctat       120
     cttccgcatg cgcagatact ggtagtatac aagatagtaa ttaggactac gatgcttaca       180
     attcagagct tgaattatgc cgagaatctg accttactat attgttgagt gcctatatat       240
     aaacacgact atagttatta acaccagcta tacaatcggt cccatacatt tgctcgtttt       300
     ctttcttata attttggaga aacaacagat taggtttgct taggtagaaa tactttcata       360
     tgcaatttta gaatactgca tattttgata agatatcagt actgattgct acttgatagc       420
     ttgtggatgg ttaagtaaat ctcagtcttc gtggagccaa aagttataaa gtcagattga       480
     atggttttgt attaacgata ctatcaaaga tagttagaat gttgcccgga acttggccat       540
     atgctgcttt gcatatcctt gccgaacatt tctgactgga ttaaaatgtt gaatgttaca       600
     aaccgctttc taaagtagtt tcaataaacc agataaatta cctactttca ttgaggcgat       660
     tatatttcgt aattaaaaaa aaaaaaaaaa aacttctact ctattatgtt accaaaccaa       720
     tgtcacgaat caggaaaaat ttaattaatc atgttgcctt tacgcagccc acaaaatgta       780
     cagccgtcgt cagagagagc tgataaccac tgtgttctat gccagttagt aatggacaat       840
     acacagtctt gctattgcac cccttgtagg catgtttttc acaaactttg cttggaaggt       900
     tggttggtaa accatgctaa atgtcccagt tgtagtgctg tgattgaccc agcctcaatt       960
     aaattagttg ttggagattg ctcgccgaga ggaaaacaat ctgctccacc tccacctacg      1020
     aacataggga gaacggtaac gcgcagtcta gcaaaatctc ttaatcctgg tccgacccag      1080
     agtggcgaga atccaacagc aaggttatta gatgttagtg atgtaccaca atcaggactc      1140
     gacgctagca atagcacgaa tccacctgaa atcgctcctg cacgaccagc tcctggtgta      1200
     agaagaagag gaagacccac tcagtccaat aatacccgcc aaaatctggg agtggactat      1260
     aggataattc aggagatgat cgaacaatca atcactcgcg ttatgtcatc actgcaaata      1320
     caagcaacac cctttccaag agtgttgcca accccgatcc cggtgtcgcc tagtagttcg      1380
     tcattccgaa atggaaaaat tgctgacacc atgcaaaaat ggaatcttaa tttcgatggg      1440
     tctaccgaag gattaggggt agaagaattt ctatatagag tcaaaacatt gactgatgaa      1500
     actttagaca gcgactttat gggtctctgt aagcacttac atgtgctatt tttaggcaaa      1560
     gcccgtgact ggtactggcg gtaccacaag caggtagacc acatagtctg gactgaattt      1620
     tgtactgcac ttcgccatca gtacaaagat tatcgctccg attttatgag caaggaacta      1680
     gtaagagcta gaaagcaaaa ccctggggaa tcatttgtgt cgttccatga cgctgtagcg      1740
     tcactgatcg ataaatttgc aattaaaatt gacgaggagg agttaatcga aattttaaaa      1800
     aataatttat tacccgaaac ccgacataaa ctgctatacc agccaataag ttcagttggc      1860
     catctacgta gattggtcca aatgaacgag aatttagttc atgagctcag ttgtcgcact      1920
     gatggtatga ataaatccag gactattggc cgtcgccaag tatatggact agaagagtct      1980
     tttattgaac cggaggtaga aaattcagaa gatacaaact ttgacatcgc agcaattcgt      2040
     agatgtcatg ccaactttaa atgttggaac tgcgaagagc aagggcatct gtgggaaaat      2100
     tgccttgctg accgccgtat attctgttac ggatgcgggg cacccaacat ttataagccc      2160
     cagtgccaaa actgtatccg taaagcttcg gaaaaccaac agaagggtgc atccagcagc      2220
     agtcggatgc ccccaaaaat ctaattaatt cccatacgaa ctgtgtacct gtggaccgaa      2280
     gcaaaagctt ggtccctaca ccgactttaa agtcacattc caacaattta gaaatagcta      2340
     aaactattaa attacgattt ttaccgtatc atgaacggtt agctaattat ttgcatgtcc      2400
     gaaataagat tttttatgaa gaaaaacccc gtatttctca gcgaacgcag cgcttgaaaa      2460
     attattattc aaaaatcaag caacatagca agcttttagt ttcgacagtt ttttgcaatc      2520
     ccaccgatat gcgcagctat gccgaagtgt catttttaac ctttaccgag cttggtctat      2580
     tggatacagg cgcgaatatt agctgcatag gttctacgct tgcgcaacaa gattttaccg      2640
     caatgccgga atttaagcct attaaatcgc atgtcagaac agcagatggc catagtcaga      2700
     aagtcatcgg agtgcttgaa gttaaaatgc agtataaatc ggctaccaag tccttgaaac      2760
     tgtatgtgat tccttctata aaccaaaatc taattttggg tcatgatttt tggagagcct      2820
     ttgagcttgc gccaagcatt ataaattctg tagaactaaa atcaatggaa aaagagcagg      2880
     aaacagagtc gattgcatac cccttagata gccagcaaac gcaacagctg cacgtagtaa      2940
     agcagttgtt ccccaacgct gctgatagat taggccgcac aacattgatc caacaccgta      3000
     tagatatagg agacgcacgt ccagtgaaac aaagattcta tcctgtaagt ccggccgtag      3060
     aaaagttgtt atatgcagaa attgatcgca tgttgcagct tggagttatt gagccgtctg      3120
     taagcgcttg gagctcgcct atgcgactcg tccttaagcc caacaaggtg cgcctttgtc      3180
     tggatgctcg aagactgaat gacgccacaa aaaaagatgc ttatcctttg ccgagcatcg      3240
     atggcatttt ttcgcggcta cctaaggcga atataatttc caaactagat ttgaaagacg      3300
     cctattggca aatagaactt tccgaggatt caaagcctct cactgctttt acggtccccg      3360
     gaagaccgct atatcagttt aaggtcatgc cctttggcct ttgtaacgcg ccttctacca      3420
     tgtgtcggtt aatggacgag ataattcctt ctgacctgcg ctattgcgtg tttggttatt      3480
     tagatgatct gtgtattgtg tcagaagatt tcagttcaca tctggcggta ttggttcgca      3540
     tcgctgagca gtttagaaaa gccaacttga ctttaaatat ttcgaaaagt caattctgtg      3600
     taacaagtat caattatctt ggttacgtga ttggtagcgg aggtatttgc acagatccgg      3660
     aaaaagtagc ttgtattgta aattggccgc cgccaaaaaa cttgaagcaa gttcgaggat      3720
     ttctaggagt ttgcggttgg tatcgtcggt ttatatgcaa cttttccgat ctcacttgcc      3780
     ccataacgga catattatcg acaaagaaaa agtttgagtg gacccctgaa gcacagaccg      3840
     caatggacaa cttaaaaaca gtgctaacat cctcgccggt tttaaaaaat gctgacttta      3900
     agaagaaatt tttcttacat tgtgacgcta gtgattttgg cattggcgcc gttttagtac      3960
     agatgtctga agataatgaa gaacaaccga tagctttcat gtcaaaaaaa ttaagccgtg      4020
     cgcagcgaaa ctatagtgtt accgagcgtg aatgcctagc agtcatatta gccatcgaga      4080
     agttccgatg ttatttggaa ctccaggaat ttgaagtggt taccgaccat tctagtttgc      4140
     tatggcttat gcgccagcaa aatatatcgg gtagactggc acgatgggtt tttagactgc      4200
     aacaatttaa attttccgtc tcccatcgga aaggcaaaga acacattgtt cccgacgctt      4260
     tgtctcggtt gcctgagaat gaaatcgctc aattagacat gggtcctgta atagatcttg      4320
     agtccgatac atttatggac gctagctatg tacaaattaa agacaaattt tcccaaaatt      4380
     ttactcagtt tccggacata aaaatcgttg ataagttttt gtatgtacgc accgaacatt      4440
     cgaggggaga ctcgacacca gaaagtcctt catggaaact atgggtgcct gatcgactta      4500
     aagtcgatgt gctcaaacaa gcccatgaca gcataacgtc gtctcacgcc ggcatgcaaa      4560
     aaaccattga gaaaatccgc agacatttgt tctggccagg attagttaaa gatgtacgtg      4620
     aatacatacg aaattgcgag atatgtaaag aaactaaggc tccaaattat acccttcggc      4680
     cacctatggg tgctcacatc ccaacttgca gaccatttca aaggctttat attgacctgc      4740
     ttgggccata ccctagaagc aaaagcggtc atgtgggatt gttaatagtc ttagatcact      4800
     ttagcaagta tcattggttg cagcccctga agaaattcac ctcagctgtg atacaaaaat      4860
     ttcttcttga acaaattttc cattgttttg gtgtgccaca aactataata agtgacaacg      4920
     gcacccagtt caaagctcgt gagttcaatg ccttcttagc cgaacttggc attgaacatc      4980
     tgtatacagc tctatattca ccgcagagca atgctgcaga acgagttaac cgctcaatac      5040
     tcgccgccat tcgctcgtat ttaaaacagg atcagaccca ttgggatgaa catattacag      5100
     ggatttcatg ctccttaagg tctgctctgc accaatcgat tgggtgttct ccataccgtg      5160
     ccctattcgg ggtggatatg atcactcatg gtaccgatta caaattattg aaggagttgt      5220
     ccttattgga agaaccgctg gtccccctgt tgcggtctga ccatttggca ttgctaagga      5280
     cagatattca gaaaaacatc aggaaagcct atgagcgcaa tgcggctcaa tataatttac      5340
     gcagcaagcc tgtttctttt cgtgaaggac aggaggtgtt ctgtcgaaat tttgcgctta      5400
     gtaaattctc acacaatttt aatgctaaac tggctcccca gtttattaaa tgccgtgtca      5460
     aaaagaaact cggcaattgt ttttattccc ttgaaaatca gcaaggaaaa gaaattggca      5520
     cttttcatgc caaggacatt agagtctaat tcccgctaat atacccgtct aacggtagga      5580
     tattatcggg tggtgtaatg gtcgcaattt tcctatttga attaaaccgc gtaagcgatc      5640
     ctaacagctt gcgtttgtgt aacgacgcta tagcgatcag cttttgtctg tcacggtcag      5700
     ctgcgaatga ttctgccgct gctataaacc gcctgcgtgc acgttggcag cgcagctatc      5760
     ttcaatctaa tccgcgaaag aaaaaaagct ctgagaccct atataagcct gtaggtcccg      5820
     gatataaccc ttcttttttt caaaaatttc tttaccatcg aaggtctggc tacggcggtt      5880
     cggacatagc cccaccaaaa aaattaaact aaaagcatca gtcgtttaat tcgttgaatt      5940
     taaattccaa ctaaattgaa ccaaaaaaca aaaaaaaaaa aaaaataaaa aaaaaaagga      6000
     aaaccctaaa agtggccgat gggcgaaata tcaatttttt tgttcgtttg atgataaacc      6060
     tttcgctacg ccagccggcc accagcacct caccggcata tatttctttg tgccaagatc      6120
     tggtcactgt tttaaccagt tcttgtctgc ctgccgaaag taatttttgg aggaatcaat      6180
     cttgccgccg ccgtctctga cataaaaacc cacttatttt gaggcaaccg ccacgtgtgc      6240
     ccattggacg gcactgtaat ttcttgggac ggcaatgtca tttctgcccc cattaaatag      6300
     acgtcagcct caactgcgga tcagctgcca ttcccttgct catgccagca agaacgggca      6360
     ggcgccgttt ccacagtctg gaatccggaa gagggagtag ccttttgggc cccattgacg      6420
     cgccgctgat cagaagccca gatgacatcg cccattaagt tggccggagc gtgcagatgc      6480
     atgaaaattg ctgttaaatg tttttagtaa aaaaattgtt aattaaatct tgtgagagac      6540
     ttccaaaagt ttg                                                         6553
//
ID   Gypsy-11_DVir-LTR repbase;    DNA;    INV; 1611 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   06-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DVir_;
KW   Gypsy-11_DVir-I; Gypsy-11_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1611
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1823-1823 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1611 BP; 498 A; 298 C; 270 G; 545 T; 0 other;
     tgcagatgca tttattaggg ccctcaaaaa accgcgtgca agtgcaggga aaaaagaaaa        60
     atttacatct atatacatat ctttatatat atagaaagga ttaatagtat aaatctatcc       120
     cccttcttgt tggggtagag tccaaagtca tttctgaatt ttttttatat ttttttttag       180
     tttcggagag tatcttctaa gtactcacaa tttaaaaacc ctcctgtgcc ataataatat       240
     aatcaaaaca atttaaagcc ccacagaaga caaaagaaaa caaatgaaag aaaaaaaaaa       300
     taaaatttgc tgcaaactct ccgctggaag gcctttcatc gaggaataca tgtaagtctg       360
     taccttttgt tttgagtata ttttcttatt ttggcacaga taagcacagc caagctgaca       420
     tgcgcacctg ctgagttttt ttttcgactt tctgtttcac attacgcttt agctccgatc       480
     aatatgttta tgaccgtgtc agtctggtga atgcttatca tctttgattc tacctacacc       540
     ccgctcaatt attagctgaa acagaagcaa cctaaaagaa aagattttta acagaatcaa       600
     atatatgtac acaaagatgt atcatcgtat tcactgatca gctggttgcg ctgcgctccg       660
     atttgcccat gcgcttcgag cttaaccttc tgttgcccat attttttttc gaccatacaa       720
     ttaaccatca actacaatta tattgactct attataataa attttttttg cttttgccga       780
     atacacttta gttcaattta ctaatgtcat ttttttttct tgcctagcct tattctataa       840
     ttattaaaac gcactttagc gaaattttga gatttttttt ttattttgct caataagaaa       900
     aaaaatatta actgaatagt ttataaaatg aattattttt gaagaatttt tgagccattg       960
     taaaaatatt aactgactag ttttagttac tgaattattg ttgaatcatt aatgccactt      1020
     gtaataagat gcagattatc caacggaagg attcaatttc attgaataat gcttttgttt      1080
     ataataaata ttaattacgg attttgatta tgaattgcta agttttcttt cctggtgaca      1140
     tggtgatata atgtcgtaga agaatgtttt tttttgggat cttcaaaacc ttaaacgctg      1200
     aagatcatgg ctgggagggt atcgaacgcg agagtcagct tacatccaag acttcgcctc      1260
     ttacggaata tatatgccct aatgaaagct atcaccattg tattggcact ttaagtgctc      1320
     gttaagttat gcctgtttga gattttgttt cttcggagta tcggtctcca atttagattc      1380
     tgtagggatc ctaaaataaa attgtgtatg caggtcgaga catggcaaaa agaacccccc      1440
     cacccgaaag agctagggag caagaggatc ccgccctgcc atgctaactc aaccacgagg      1500
     agcctcggtg aatacttccc gaattatttt gtgaagattg gctgccaacc gccgtcaccg      1560
     ttgctacccg atatgtattg ctagagtagc ttcaccacag tacatgctac a               1611
//
ID   Gypsy-11_DWil-I repbase;    DNA;    INV; 4803 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DWil_;
KW   Gypsy-11_DWil-LTR; Gypsy-11_DWil-I.
XX
NM   Gypsy-11_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4803
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4803
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..4800
FT                 /product="Gypsy-11_DWil-I_1p"
FT                 /translation="MLVKLSTLRVAELDIILQTNNIHVNGNKQAKIDEITT
FT                 ILGTDQINTDEYDFNQQNSTMQRQMDELKQMVADLSQAVSTINVRTQNLMT
FT                 ERQERANEPARSEENHQHDVVEQQSMGQRISPRDYNSNTSIKDVIGMLPEF
FT                 DPIKGAVNSQQFLDKVEQLQIVYEWRDATILFAVQHKLRGVAKDWLDSQRV
FT                 YQTWSQFKDALLKDFPSVVNISDVHRQMMRRKRKHNETLIEYFYSMMAIGR
FT                 KANIDDKSINSYIINGLNQQESTKALLAMNLCTCAELFRSLENMNSSSVWQ
FT                 SYRTAEYASSDTAKTMEVNKDNNAKGPKCFNCNNIGHIAAKCPVESKKPRC
FT                 SFCSKIGHEGKDCRLKRSTVSKVDSIKDKKRPPILKKILIEGHEYEAFVDT
FT                 GSDNTFMQKSQVPKDAVLQVMTNSFRGFGGGIVESKECLLTEIVWDNKRID
FT                 VCIYVVQDKELNHAVLLGRDILCAEGETKVETKSTNSPTEVKCEFDIGAEV
FT                 DDPQRKQVSDLLNAYTECFAEDFSNIGRCKSTKMEIKVTTTNPIVGRRYQV
FT                 PFAKRDALRTVVDELLKYNIIQRSTSPHAASSILVPKPNGEHRLCVDFRAL
FT                 NAVTVKQHYPMPVVEEQLAKLAGNHFFTTLDMTSGYYQIEMSNESKIFTAF
FT                 MTTDGLFEFNVMPFGLINAPMVFQKVIADIIRNLKYQRNIISYVDEVIISS
FT                 KTIDEGKVILNEFLEAVKSEGLTLRPSKCKFMKKEVKFLGHIITGKGIQPG
FT                 KEKTQCIAEYPQPTNEIEIRRFLGITGFFRKFVPNYSIIAQPLSMLLKKNQ
FT                 NFIWTPDQNEAFNRLKEAITTEPVLTLYDPTKYHEVHTDASTTGISAILFQ
FT                 QEDEDIKPVFYFSRLCTDSESRYSSHALEVLAIAESLERFRVYLLGSQFSV
FT                 ITDCNAVATLKNSTALQPPIARWWLRLQEFDFICKHRPGLDLPHVDGMSRQ
FT                 PVLKEQSSIMETDGIFKVIPIDDDWVYTMQKQDPKLKQIFEIFQMKDKSAD
FT                 WKQIKNDYVISKSRLLRKTDKGDKLVVPQAVRWRITKSNHDDVGHYSAQKT
FT                 MERIGRYFWFPRMRKFIKSYIDSCPECCINKIKGGKPDGEMHLQDVIPMPF
FT                 RTINIDHIGPFPKSKSGNIYILVIVCAFTKFTILVATRNTKTIPVIKALSH
FT                 MFGIFGQPLRIISDRGTSFTSKEFKDFVQNYGIQHIKTAVRTPRANGQAER
FT                 MNKTLLNALKTSTDKNKDWDQQLFNIQWSMNTNVNSTTKFSPNDLVFNFNP
FT                 KDVSYNRIIQAMTEDQFEETDVQLNRHQAAENIKAEQEKWKKRFDLKHAKP
FT                 QKFEVDDLVVIDYVPMATGDTHKLDPAFKGPYVVTKVLGNDRYIVEDLPDR
FT                 SVSQRRYSNVISSDHMKPWCVLIPGLDIEEEGYDYIGINEEESGEA"
XX
SQ   Sequence 4803 BP; 1794 A; 861 C; 1018 G; 1130 T; 0 other;
     aatcagaagt gggatacgaa gacacacggc tttcggaaaa gacggaataa tttatttcat        60
     aagtgatgaa ataaatttaa gaatccagcg agacaaggga aaaagacaaa cggcaaaagt       120
     gcaaaacggt cacgatttcc cgaaagagta aaagagatat ctataggtca acgaaacagt       180
     ggaagaaaga caaaacggca aagaagcaaa acggtcacga aacttccaaa gctgtaaaaa       240
     gacaagggta gatacataca agaaaaaaaa cgcgggaaaa gacgcaacgg cattaatcgc       300
     aagacggtca cgaattccca aagtaacgga aaaaggtttg cacggatttc atggggaggc       360
     aagacatcga caacggcaag tcataaggga cgaagcaaac atcgacgtag aaatctccac       420
     gagaaaggca atcacagaaa agacggaaaa agtccatacc taactatcga atgtatcgat       480
     agcatttatc gataaaccaa tcgttggaaa ggtccagatc taaaaagcac gaaaaaaaag       540
     agacaattga ctagaaaaaa aaaagttaag aaaatgttgg ttaaattatc tacactacga       600
     gtggcggagt tggatattat tttacagaca aataatattc atgtaaatgg taacaaacaa       660
     gccaagattg atgaaattac gacaattcta ggaacggacc aaataaacac cgacgaatac       720
     gatttcaacc agcaaaatag tacgatgcag agacaaatgg atgaactgaa acaaatggta       780
     gctgatttat cgcaagctgt atcaacgatc aacgtacgaa cacaaaatct gatgacggaa       840
     cgacaggagc gtgcaaatga acccgcaagg tcggaggaaa accatcagca cgacgtagtc       900
     gagcaacaat ctatgggaca acgaataagt ccacgggact acaacagtaa tacatcgata       960
     aaagatgtta taggaatgct tcccgaattt gacccaataa aaggagcagt gaattcgcaa      1020
     caatttttgg acaaagtaga acagttacag atcgtgtatg agtggagaga tgccaccata      1080
     ttgtttgctg tacagcacaa actaagaggt gtagctaaag actggttgga ttcacaaaga      1140
     gtatatcaga cttggagtca atttaaggat gctctactaa aggattttcc aagtgtagtt      1200
     aatatatcag atgttcacag gcaaatgatg cgccgcaaga gaaagcataa cgaaacgtta      1260
     attgaatact tctactcaat gatggcgata ggtcgaaaag ctaatataga cgataaatcc      1320
     atcaactcat atattatcaa cggattaaat cagcaagagt caacaaaagc tttactagcc      1380
     atgaatttat gtacatgtgc agaattgttt cggtcactgg agaatatgaa ttcttcatcc      1440
     gtatggcagt cataccgtac ggcggaatac gcatcgtcag ataccgcaaa gaccatggag      1500
     gttaacaagg ataataatgc taagggtcca aaatgcttta attgtaataa tattggacat      1560
     atcgcagcca agtgtccggt tgaatcgaaa aagccaagat gttcgttttg ctctaagata      1620
     ggacatgaag gaaaagattg cagacttaag cggtcaacgg tgtcgaaagt tgatagcata      1680
     aaggataaga agcgtccccc aatcttgaag aaaatactta ttgaaggaca tgaatatgag      1740
     gcgtttgtag acacaggcag tgacaataca ttcatgcaaa agtctcaggt accgaaggac      1800
     gcagttctac aggttatgac caattctttc agaggttttg gaggaggaat tgttgagtca      1860
     aaggaatgcc tgttaacgga gatcgtttgg gataacaagc gaatagacgt atgcatctac      1920
     gtagttcaag ataaagaact taatcatgca gtcctcttag gaagggatat tttgtgtgca      1980
     gagggtgaga caaaggtcga aacgaagtca actaattctc caacggaggt aaaatgcgag      2040
     tttgatatcg gcgctgaggt tgacgatcct cagcgcaaac aggtgagtga tctattgaac      2100
     gcttatacag aatgctttgc cgaagatttt tcaaatattg gcagatgcaa atcaacaaag      2160
     atggagatca aagtaacaac cacgaatcca attgtgggac ggcgatatca agtaccattt      2220
     gcaaaaagag atgcattacg aacagtagta gatgaactcc tgaagtacaa cataatccaa      2280
     cgaagcacat caccacatgc agcatcctcg attttggtgc ccaaacccaa tggagaacat      2340
     cgcttatgtg ttgatttcag agccctcaac gcagtcacag taaagcaaca ctacccgatg      2400
     ccagtcgtag aagagcaatt ggcaaagtta gcaggaaatc atttctttac aacgctggat      2460
     atgacgtctg gatattatca aatagaaatg agcaacgaga gcaagatatt tacagccttt      2520
     atgacaacag acggattatt tgaatttaat gtcatgcctt ttggtttgat taatgcgcca      2580
     atggtattcc aaaaagtcat cgcagatatc atacgaaacc tcaaatatca aagaaatata      2640
     ataagctatg ttgatgaagt tattatttca tcaaaaacga ttgacgaagg aaaagttatt      2700
     ctaaatgaat ttttagaagc ggttaaatcc gagggattaa ctctacgtcc atctaagtgc      2760
     aagttcatga aaaaagaagt caaatttcta ggtcatatta ttactggtaa aggaattcaa      2820
     ccaggaaaag aaaagacaca atgtatagct gaatatccgc agccaacgaa tgaaatagaa      2880
     atacggagat ttttgggaat tactggattc ttccgtaaat ttgttccaaa ttatagcata      2940
     atagcacaac cattgagtat gcttttgaag aaaaaccaaa actttatatg gacacctgat      3000
     caaaatgaag ctttcaatcg tttaaaagaa gctattacaa cggaaccagt cttaacgcta      3060
     tatgacccaa cgaaatatca tgaagtgcat acggatgcga gcaccacagg aatttcagca      3120
     atactatttc aacaggaaga cgaggatatc aagccggtat tttacttcag tagactttgt      3180
     acggattctg aaagtcggta ttcaagccat gcactggaag ttttagctat agccgaatca      3240
     ttggaaagat tccgggtata ccttcttgga tctcaatttt cagtaataac ggattgcaac      3300
     gctgtagcaa cattaaagaa ctcaaccgct cttcagccgc ctattgcgcg atggtggctc      3360
     agactccaag aattcgactt catatgtaag caccgaccgg gcttagattt accacatgta      3420
     gatggaatga gcagacaacc agtacttaag gaacaaagca gcattatgga aacagatggc      3480
     atttttaaag tcatcccaat agatgatgac tgggtgtata ccatgcaaaa gcaagatcca      3540
     aagctaaagc aaatttttga aatatttcaa atgaaagata aaagtgctga ttggaagcaa      3600
     ataaaaaacg attatgtcat ttctaaaagc aggttactaa gaaaaacaga taaaggcgat      3660
     aaattagtag ttcctcaagc agttcgttgg agaattacta aaagcaacca cgatgacgta      3720
     ggtcattaca gtgcgcagaa gacaatggaa cgaattggtc gttatttttg gttcccgagg      3780
     atgaggaaat ttattaagtc atatatagac tcatgtcccg aatgctgtat caataaaata      3840
     aaaggaggaa aaccagatgg agaaatgcac ttgcaggacg taataccgat gccattccgg      3900
     acaataaata tcgatcatat tggaccattt ccgaaaagca agagcggaaa tatttacatt      3960
     ttggtgatag tatgcgcatt caccaagttc accatattag tcgcaacacg caacacaaag      4020
     accatcccag ttattaaagc gctttcgcac atgtttggta tttttggaca accattacgt      4080
     atcatatcag atagaggtac ttcgtttaca tcaaaggaat tcaaagattt tgtgcaaaac      4140
     tatggcatac aacatattaa aacagcagtg cgcacaccac gcgccaacgg tcaagctgag      4200
     agaatgaata aaacactact aaacgcgctg aaaacaagta cggataaaaa caaggattgg      4260
     gatcaacagt tgttcaacat acagtggagt atgaatacaa acgtgaattc aacgacaaaa      4320
     ttttctccga acgatttggt atttaatttt aatcccaaag atgtatcgta taaccgaatt      4380
     atacaagcaa tgacggaaga ccagtttgaa gaaacggatg tacaactaaa tcgtcatcaa      4440
     gcggcagaaa atataaaagc tgaacaggaa aaatggaaaa aaagattcga cttgaagcat      4500
     gccaaacctc aaaaatttga agtagatgat ttagtagtca ttgactatgt accgatggct      4560
     acaggagaca ctcataaatt agacccagcg tttaaaggac cgtacgtcgt aacgaaagtt      4620
     ttaggaaacg atcgctacat tgtagaagac ctacccgatc gttcagtatc tcaacgacgt      4680
     tacagtaatg taatatcgag cgatcacatg aaaccatggt gtgttttgat tccgggccta      4740
     gacatcgaag aagaaggcta cgactacata ggaatcaacg aagaggagtc aggagaggcc      4800
     gga                                                                    4803
//
ID   Gypsy-11_DWil-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_DWil_;
KW   Gypsy-11_DWil-LTR; Gypsy-11_DWil-I.
XX
NM   Gypsy-11_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-229
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 229 BP; 86 A; 33 C; 60 G; 50 T; 0 other;
     tgtcaagaat gacaaagact atacagagag agagagagag agcttaaata gagtgcatac        60
     agagagagag cacagagcga gaacgtagag ggagagtacg ggagtcttgt tggagaagcc       120
     gcgacgatcg gacgtctttg gaagaacacc atatacatat atataatttg tatgagttcg       180
     atcaaattta agctgtaata aacgtatcca ataaatcggt atcttgaca                   229
//
ID   Gypsy-11_HeAr-I repbase;    DNA;    INV; 4681 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4681
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5618-5618 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1455
FT                 /product="Gypsy-11_HeAr-I_1p"
FT                 /note="CheR methyltransferase all-alpha domain."
FT                 /translation="YVAPQRLFRVIKLFLRGHKCGAINKWTLVVTNYLVTY
FT                 VVFTMPITRSRAASLTRRDDTLEVFPDPSRPTTPTPTAPAYHQDGGGASSP
FT                 RTDNNNATFSADNVATIIASLQRSQTEAFKELFDSMNRANASTPVALLGQS
FT                 TLTRCKATFSGRPKESVEAFIDAIEAYSECAQVTDSNIVRGLAYLFKDEAA
FT                 TWWQGIKSSVSTWSQVKENLISAYGDRRPPPRIYLEIFSTPQQQHENTDIF
FT                 VARVRALLARLPKGDVSESAQIDMTYALLHSRIRKRLRREEIKSFTELLRL
FT                 ARNIEDAYDQKLTTPISDNRVQQNVQPPSTSAHHSHHAPRAPPASSHSTTV
FT                 RAPTSSVVHARTPTSSDAIARAPAAAPAAVAARPAAPLAPAPAPPTRDSQR
FT                 PASVNRQRPVCSYCKRYGHIRDQCRKLVNQGERIQSTINSADSETFYCTDL
FT                 FSFYCTDFFSCKYLQNVVCSDATTEPSAGRSLRPILKLKL"
FT   CDS           1428..4679
FT                 /product="Gypsy-11_HeAr-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="FTAYFKIKIMNFNGTALIDTAAKRCIAGHSLYTLLLG
FT                 QGHSFNSSSQNVKLADGIIRTMDVLTTTLEVHLESKVITVPFIVFPDSTNN
FT                 ETLLGIDFITAAGIVIDFDKDIWYFSSDDNIKYTLSYEPTSRRVSCASTDI
FT                 LRDDEGTHLTSAERQALADVLNRHAHVFRAGGGPTPYAEHRIETGDHPPIA
FT                 VPPYRLNPSKKQLMKAELDKMLRDDIIEECESAWCSPALMVPKSNGGIRFC
FT                 VDYRRLNAITKPDTYPMPRIDELLQSTKRDCYMSTLDLRSSYWQVGLREAD
FT                 RDKSAFICPLGTYRFKRMPFGLRNAPATFQRLIDRVRSCSALQDVTLLAYL
FT                 DDLLVISQGYTQHLKDLEAVFKRLAEFNLYVNREKCAFARGSVHYLGHVIT
FT                 QEGVSTDPRKVSAVLEMKEPGNLKHLRTFLQTCSWFRKFIPNFSKVAEPLT
FT                 RLTRKSQIWSWDSEQSQAFEELKRLLTTAPVLIQADFNRPFILRTDASNYA
FT                 LGAVLLQGDGNQERPIEYASRLLNAAERNYSTTEREALAVVWAVERFRPYL
FT                 DGQPVVIGSDHQPLRWLLSLKSPTGRLVRWALKLQAFDIQFQYTPGKANVV
FT                 ADTLSRPICSSDSRDSCGICSVICDLPTKTPSELRSEQLSDPEVEKIVKEL
FT                 EGPDDVAAQRWLERGYLMDQGVLFRYNPDSESESPQLVISASHVPNILKEL
FT                 HDSPTAGHPGIDRTYQKVAQLYYFTGMRRIITDYVKACIHCQRYKATNAKP
FT                 PGLLQTPVMNQRNEVLAIDLFGPLPEGDQGERWILLVEDTATRWTELYALK
FT                 EATAEACAHILIEEYFMRFGLPRRIISDNGVQFVSAVMRQCMTVLDIKQNF
FT                 IPLYHPESNPAERKNRDLKAMLAHLVEGDHTSWPKKLPVIRFALNSAKCRT
FT                 TGRSPAYLSFGREMRSPTEVVHDLRAIEEKHNFVPQITPYLRQFLHSFSAV
FT                 RERVEVQQDRAKRYADASRRPSDSFQVGDLVMLKSHLLSSASKDRTSKFYP
FT                 RRDGPYKIVGVVSPTTFNVASTQQPDVVIGRYHSQDITRYHGNDHSFPLPV
FT                 IPKRKRGRPTVSIPVQERGRSPELEGE"
XX
SQ   Sequence 4681 BP; 1223 A; 1233 C; 1112 G; 1112 T; 1 other;
     tatgtggcgc cccaacgttt atttcgtgtg ataaaactat tcctacgcgg acataagtgt        60
     ggtgcgataa ataagtggac acttgtagtg acgaactatt tagttaccta cgtagttttt       120
     acaatgccga taacaaggag cagagccgct agtctgactc gcagggatga taccctcgaa       180
     gtattccccg acccctcgag accgacgacg ccgacgccga ccgcgcccgc ctatcaccaa       240
     gatggcggcg gcgcgtcttc gccgcgcacc gacaacaaca acgctacgtt ttccgccgat       300
     aacgtcgcga ctataattgc atctttgcaa cgctcgcaga cggaagcgtt taaagagctg       360
     ttcgactcga tgaatcgcgc aaacgcatct actccagtcg cattgttagg gcaaagcacc       420
     cttacccgct gcaaggccac cttctccggc cgaccaaaag aatcggtcga agcatttatt       480
     gacgccatcg aagcatacag cgagtgcgca caagtgacgg actcaaatat cgtccgcgga       540
     cttgcgtacc tattcaagga cgaagccgcg acatggtggc aaggcattaa gagttccgtg       600
     tccacctgga gccaagtaaa rgaaaatcta attagtgcct acggggaccg acggccaccg       660
     ccacgtattt atttagaaat attttccact ccgcaacaac aacacgaaaa tacggatatt       720
     ttcgttgcac gtgttcgcgc cctattagcg aggttgccga agggcgacgt atcagagtca       780
     gcacagatcg acatgacgta cgccctgctc cacagccgta tacgcaaaag attgcggagg       840
     gaggaaatta aaagtttcac tgagttactc cgcctagcac ggaatatcga agacgcgtac       900
     gatcaaaagc tcacgacgcc gataagtgat aacagagtgc aacaaaatgt gcaaccgcca       960
     tccacatccg cacatcatag tcatcacgct ccgcgcgcgc cgcccgcttc gtcgcatagc      1020
     acgaccgtgc gcgcgccgac ctcaagtgtc gtgcacgcgc gcacgccgac ttcgagcgac      1080
     gcgatcgcgc gcgcgcctgc cgccgctcca gccgccgtcg ccgcgcggcc cgccgcgccg      1140
     ctcgcgccgg cgcccgctcc gccgactcgc gactcgcagc ggcccgcctc ggtcaacagg      1200
     caacgacccg tctgttcgta ttgtaagcga tacggtcata ttagggacca gtgccgtaag      1260
     ttggtgaacc aaggtgagcg tatccaatcc actataaact ctgcggatag tgaaacattt      1320
     tactgtactg atttattttc attttattgt actgattttt tttcatgtaa atatttacaa      1380
     aatgttgtat gtagcgatgc tactacggaa ccctctgctg gacgtagttt acggcctatt      1440
     ttaaaattaa aattatgaat tttaacggta ctgcgttaat tgatacggcc gcaaaacgtt      1500
     gcattgcggg tcattcgcta tatactctcc ttctaggtca gggacattct tttaactcct      1560
     cctcacagaa cgtgaagctt gcggatggta ttattcgtac tatggacgta ctcactacca      1620
     ccttagaagt acacttagaa tcaaaagtga taacggttcc gtttatagtt tttcccgact      1680
     ctaccaataa tgaaacatta ttgggtattg attttattac cgccgccgga atagttattg      1740
     attttgataa agatatctgg tattttagta gcgatgacaa tataaaatac accctgtcct      1800
     atgaacctac gtcgcgtaga gtgtcatgcg cctctacaga tatactaaga gatgacgagg      1860
     gcactcatct tacgtcagct gagcgacagg cgctcgctga tgttcttaac cgacacgcac      1920
     acgtttttag agcaggggga ggtccgactc catatgctga gcaccgcata gagacggggg      1980
     atcacccacc tattgctgtc cctccgtatc gattaaatcc gtcgaagaaa cagctgatga      2040
     aagccgagtt ggacaaaatg ttacgtgatg acattataga agagtgcgag tcagcttggt      2100
     gttcaccggc gttgatggtg ccgaagtcca acggtggcat ccgcttctgc gtggactata      2160
     ggcgtctcaa cgcaatcacc aagcctgaca catacccgat gccacgcatc gacgagctac      2220
     tacagagcac gaagcgagac tgttacatga gcacgttaga ccttcgttca tcatactggc      2280
     aggtaggtct tcgggaagcc gatagggaca agtctgcttt tatctgccct ctcggtactt      2340
     accgtttcaa aagaatgccg ttcggtctcc gaaacgcacc tgcgacgttc cagcgtctca      2400
     ttgatcgtgt ccgctcttgt tcagctttac aggatgtaac cttattagca tatttagacg      2460
     atcttttagt catttctcaa ggttatactc aacatttaaa agacctcgag gcagttttta      2520
     aacgtctggc cgaattcaac ctctatgtaa acagggagaa gtgcgctttc gctaggggga      2580
     gcgttcatta cctcggccac gttattacac aagaaggtgt ttccaccgac cctaggaagg      2640
     tgagtgctgt tctcgagatg aaggaaccag gtaaccttaa acacctgcgc acctttctac      2700
     aaacatgttc gtggttcaga aagttcatac cgaatttctc gaaggtagct gaaccactta      2760
     cacgcttgac taggaaaagt caaatatggt cttgggactc agagcagtct caagcttttg      2820
     aggagctgaa gcgtttacta accacagctc ctgtactgat ccaagctgac ttcaatcgtc      2880
     ccttcattct gcgtacagac gcaagtaact acgccttagg tgcggtttta ttacagggcg      2940
     atggtaatca ggaaaggcca attgaatacg ccagccgact cctcaacgca gcagaacgca      3000
     actactctac caccgagcgt gaagcgcttg ctgtagtgtg ggcggtggag cgtttccggc      3060
     cttacctaga cggccaaccg gtcgtaatcg gcagcgatca tcaaccactg cgatggttgc      3120
     tttcacttaa atcaccaaca ggtaggttgg tccgttgggc gctcaagctt caagcttttg      3180
     acatccaatt ccagtacaca ccagggaaag cgaacgtcgt ggcagacacg ctgagcaggc      3240
     cgatctgttc tagcgactct cgtgacagct gcggtatctg ctcagtcatc tgtgacttgc      3300
     ctacgaagac gcctagtgaa cttcgctcgg aacaactctc agaccctgaa gtggaaaaga      3360
     ttgtcaagga gcttgaggga cctgatgatg tcgcggccca aagatggcta gaaaggggtt      3420
     acctcatgga tcaaggtgtc ctgttccgat ataatccgga ctctgagagt gaatcaccgc      3480
     aactagtcat ctctgcaagc cacgttccaa atattttaaa agagttgcac gactctccaa      3540
     cagccggcca tccaggcatt gacagaacgt accagaaagt agcacagctg tattatttta      3600
     caggaatgcg gagaataatc actgattatg tcaaagcctg catccactgc caacgatata      3660
     aggccaccaa cgccaaacca ccaggcttac tccagacacc cgttatgaac caacgtaacg      3720
     aggtgttggc tatagattta ttcggcccgc taccggaggg agaccagggg gagcgatgga      3780
     ttttactcgt tgaagatacg gctacacgat ggaccgagct gtatgctctt aaagaagcca      3840
     cagcagaagc ttgtgcccac attcttattg aagaatactt catgcgcttt ggtctacctc      3900
     gtaggattat ttcagataac ggtgtccaat ttgtttcagc cgtcatgcgc caatgcatga      3960
     cagtattgga catcaaacaa aacttcattc ctctctatca tccagagtcg aatcctgcag      4020
     agcgaaagaa tcgtgacctc aaagccatgc tagctcatct cgtagaggga gaccacactt      4080
     cttggccaaa gaagttgccg gtgattcgat ttgccctcaa cagcgctaag tgccgcacta      4140
     caggaagatc acccgcttat ttgtcctttg gcagagaaat gcgatccccc acagaggtcg      4200
     ttcatgacct tcgtgccatt gaggaaaagc ataacttcgt gccgcaaatt acaccttatc      4260
     ttaggcagtt cctccactcg ttctcagctg taagagaacg cgtggaggtc caacaggaca      4320
     gggcgaaacg gtatgctgac gcttcgcgcc gaccgtcgga ttctttccag gtaggtgact      4380
     tagtaatgtt gaagtcgcac ctacttagca gcgcatcgaa agaccgtacg tcgaagtttt      4440
     acccacgtcg cgatggaccg tataaaatcg tgggagtagt tagtcccaca acattcaatg      4500
     tagccagcac gcagcaacct gatgttgtca taggcagata ccattcgcaa gacattaccc      4560
     gttaccacgg taatgatcac tccttccctc ttcccgtcat ccctaaaagg aaacgcggac      4620
     gtccaacggt tagcatacca gttcaggagc gagggcgttc tccagaactg gagggggagt      4680
     g                                                                      4681
//
ID   Gypsy-11_HeAr-LTR repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-458
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5589-5589 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 458 BP; 99 A; 129 C; 96 G; 134 T; 0 other;
     tgtagcaaac catttacatt ccgaacatac tcgtccagta cgagcgtccc gtggtcgcat        60
     ccccccgcgc taccttgacg gcgcggacat agatgcgctc ggatagcttc ggcttctttc       120
     ggctcgcgcc gcttaggcgt cgaagcgcct acgactgttg gccggcccgc accccgcgca       180
     gtccgccacc aaccggcgtg tgatacacac atatatatgt atgctcgttc cgcgcagccc       240
     cgccaacagc cgaggctagt tagttttata cacgaagtct atgtatacca cgaatcctcc       300
     cgataactgt gttcgttagt gattaactct tttttttgta ataattctta taactttttt       360
     tgtacttttc tgataatggt gtagtgtggt tatgttcttt cttcattata caaacgtaat       420
     cataaccggt gcgtttaatt ggaaacccca ctcccata                               458
//
ID   Gypsy-11_Hmel_I repbase;    DNA;    INV; 4319 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy;
KW   Gypsy-11_Hmel_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4319
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4211
FT                 /product="Gypsy-11_Hmel_I_1p"
FT                 /translation="IFEDNTKMAFFGSTLGYDHHSQQWDIYISRFKQYCTA
FT                 NNISEENDKAGVKRRALLLTSFAEDTYRIAKDLAYPTDLENIEYSTLLQKL
FT                 TSHFVVKKSTFAERYVFYKAEQHPGEDLTDWAARVRSLAQHCEFKSDLDTA
FT                 LRDRFVLGLENNKEKEKLFAENIETLTFNKALELATNIRCARLALHSASIE
FT                 PATSHRHATDASGATEVFAVRARAAATAKLNNGKPVCAVCGYRNHSKNECR
FT                 FANYTCRKCNTKGHLQRMCGKQIPKYNNFLSKYEDDIEKCDLNSFNIKCIN
FT                 GAPMTETVLIGSERLLCELDSGSAVSVLPQHVYERCFAGRAELHSCRVVLN
FT                 CYNGSKMHPLGFIVVPVEYEGHTQMLKIYVLNCSVHQPVLLGRDFISAFNL
FT                 QLCRMTCHSITDDKVCNGLTETFKKLFVDELGRFNKYKITLKIKPNSQLKF
FT                 FKPRPVPFALKPKVESELERLVSLGILEKIDHSDFATPIVPVLKADGNVRI
FT                 CGDFSVTLNKVLYTDNYPLPRIEELFSKLHGGVEFSKIDLSRAYNQLVLDD
FT                 SKNLTCINTHKGLFRFNRLVFGLANAPFIFQRAMEQLLSDIEGTCIFLDDI
FT                 LITGPTKAIHLERLELVLSRLQDAGLRLKRDKCEFFKSSVEYLGFIIDKNG
FT                 LHKSXQKIKAILDAQCPKNVSELKSFLGMVNYYRCFVPNTSSILNPLHSLL
FT                 KKGEPWIWGKLQNDAFTKIKQELISDRVLAHYNPESTTIVTADAGPAGLGA
FT                 VLAQRQADGSERVVAYASRSLSKAERNYAQIQKEATAIVFAVKKFHHYLYG
FT                 RTVPFTLRTDHKPLLSIIGTKKGIPELAANRLQRYALFLSAYNYNIEFVKG
FT                 ENNTADFLSRSVPIGYNSEINDKEIDKSSIVNFVSDIFLKPVTVNEIRKET
FT                 ERDEILKIVINHLKNGWPRNVNDVKVRPYFLCRLELSLENGCLLRGHKIII
FT                 PAVFRDRLLNELHSSHFGIVKIKTEARSRMWWPNIDKQIEEKVGSCSLCAS
FT                 FRSSPPRAPLAPWPYPERPWERVHLDFFALHEKNFLIVVDAHSKWIECYPM
FT                 SSTNSDAVIMKLYELFSRFGLVHTLVTDNATNFTSSQFNNFCISNNIKHVT
FT                 IAPYHPASNGQAENTVKTVKKALKIILKTESNQRNINVKLLKFLFDYRNST
FT                 HCTTGYSPAELMLGRKLFSTLDFLKDTRTSPNSMSLASAAKTAVNYKQDLQ
FT                 SKQYGGVRNVCFNIGDQVLVKHFYYNGNKCTWHLGVIRSKIGSRLFMVYIP
FT                 VLNLLIKKHFDQLLKYTGVTCVPKTDXVGPVANSETTLDQVGEREKLSEET
FT                 ESSDPDVLINVDQSNKSNVDSNSRMGTKQALPVVDKNNVNILPGEDTTPVS
FT                 VTAESGRRYPIRKTRNQKNV"
XX
SQ   Sequence 4319 BP; 1373 A; 696 C; 972 G; 1273 T; 5 other;
     aattggcgac gagggactta ccgacgtttg caacaacgtg tataaagtgc atttcattat        60
     aaattttcga ggataatacg aaaatggcgt tttttgggag tacactcggt tatgatcacc       120
     actcgcaaca atgggatatt tatatcagtc ggtttaagca atattgtaca gctaacaata       180
     ttagcgagga aaacgataaa gcaggagtga aacgtcgagc cctgttattg acatcttttg       240
     ctgaggacac gtaccggata gcgaaagact tggcctaccc tacggacttg gaaaatattg       300
     aatacagtac gttattgcag aagctcacca gtcatttcgt ggtaaagaaa agtacgtttg       360
     cggaacgata cgtattttat aaagcggaac agcatcctgg ggaagaccta acggattggg       420
     cggctcgagt tcgcagccta gcgcagcatt gtgagttcaa atcagatctt gacaccgctt       480
     taagggatag atttgtgttg ggactagaaa acaataagga aaaagagaaa ttgtttgcag       540
     aaaatattga aacgttgaca tttaataaag ctctggagtt agctacaaat attcgatgtg       600
     cccggttagc attgcatagc gcgagcatcg aacctgcgac ttcgcatcgc cacgcgacgg       660
     acgcatccgg cgccaccgag gtgttcgcgg tgcgagcacg agcagcggcg acggcgaagt       720
     tgaataacgg gaaaccggtt tgtgcagtgt gcggctacag gaatcatagc aaaaatgaat       780
     gtcgttttgc taattatacg tgtcgcaagt gtaatacgaa aggacatcta caacgcatgt       840
     gcgggaaaca aattcctaaa tataataatt ttttaagtaa atatgaggac gacattgaaa       900
     aatgtgattt aaatagtttt aatattaagt gtataaacgg agcgccgatg acggagacag       960
     ttttaatcgg tagcgagcga ttgttgtgtg agttagacag cggcagtgcc gtctccgtgt      1020
     tgccccaaca cgtgtacgag cgatgtttcg cggggcgggc cgagttgcac tcgtgtcgtg      1080
     tggttttaaa ttgttataat ggcagtaaaa tgcacccttt aggatttata gtggtgcctg      1140
     ttgaatatga aggtcacaca caaatgttga aaatatatgt tttaaattgt tctgttcatc      1200
     agccggtact tttaggtcga gattttataa gtgcgtttaa cttgcagtta tgcaggatga      1260
     catgtcatag tataacggat gataaagtat gcaacggttt gacagaaaca tttaagaagc      1320
     tatttgtgga tgaattaggc cgttttaata aatataaaat tacactaaaa attaagccaa      1380
     attcgcaact taagtttttt aagccccgac cggttccttt cgctttaaag ccaaaagtgg      1440
     agtcagaatt agaaaggtta gtgagtttag gtattttaga aaaaatagac cattcagatt      1500
     ttgctactcc catagtaccg gttttaaagg cagacggaaa tgtacggatt tgtggagatt      1560
     tttcagttac gttaaataaa gttttataca cggacaatta cccattaccg agaatagaag      1620
     agttattttc taaactacat ggtggggtcg agttttcaaa aatcgatctg tctagggctt      1680
     ataaccagtt agttctagac gattctaaaa atttaacgtg cattaatact cataaggggt      1740
     tattccgttt taatagatta gtgtttggat tagctaatgc accttttata tttcaacggg      1800
     caatggagca gttattgtct gacatagagg gaacgtgtat ctttttagat gacatattaa      1860
     taacggggcc cactaaagct atacatttgg aaagattaga attagtctta agtaggttac      1920
     aagatgcggg gctacgatta aagcgggata aatgtgaatt ttttaagtct tcagtggaat      1980
     atttaggttt tataattgac aaaaacgggt tgcataagtc aaahcaaaaa ataaaagcaa      2040
     tactcgatgc tcagtgtcca aaaaacgtsa gtgagttgaa atcttttctc ggcatggtta      2100
     actattacag gtgtttcgtt ccaaacacgt cgagcatatt gaatccgttg cattcattat      2160
     taaaaaaagg cgagccatgg atttggggga agttacagaa tgatgcattt acgaaaatta      2220
     agcaggaatt gatatcggat cgagttttag cacactataa ccccgagtcg acgacgatag      2280
     tgacggcgga cgcggggccc gcggggctgg gcgckgtgct cgcgcagcgg caggcggacg      2340
     gctcggagcg cgtggtggcg tacgcgtcgc ggtctttgtc taaggcggaa cgtaattatg      2400
     cacaaataca gaaagaagcg acggcgatag tatttgcggt aaagaaattt caccactatt      2460
     tatacgggcg tacggttcca tttacgttac gcactgatca taagccgttg ttatcgatta      2520
     tcggaacaaa aaaaggcatt cctgaactag ccgcgaaccg tttgcagcgt tatgcgttat      2580
     tcctatccgc gtataattat aatatagaat ttgttaaggg tgaaaataat acagctgatt      2640
     ttttatcgcg gtctgtgccc attggatata acagtgagat aaacgataag gaaattgata      2700
     agtctagtat tgtaaatttt gtatcggata tttttttaaa acctgtaacg gttaatgaaa      2760
     ttaggaaaga gactgagaga gatgaaattc taaaaatagt gattaatcac ttaaaaaatg      2820
     ggtggccgcg taacgtgaat gacgtgaaag tgagacctta ttttttgtgt cgtttagaat      2880
     tgtctttaga aaatggttgc ttgttacggg gacataagat tataattcca gcagtttttc      2940
     gagataggtt actaaatgaa ttacattcct ctcatttcgg aatagtaaag attaaaacgg      3000
     aagccaggag tcgtatgtgg tggcctaata tagataaaca gattgaagaa aaggtaggtt      3060
     catgcagttt gtgtgcatct ttccgcagtt ccccgcctcg agctccactg gctccctggc      3120
     cttatcctga acgtccatgg gaaagagtac atctagattt ttttgcgttg cacgagaaaa      3180
     attttcttat cgtagttgac gcccattcca agtggataga atgttatcct atgtcttcca      3240
     caaatagcga cgctgttatt atgaagttgt acgaattatt tagtagattt ggtttagttc      3300
     atactcttgt tacagataac gcaacgaatt ttacttcgag tcagtttaat aatttttgta      3360
     taagtaataa tataaaacat gtcacgattg caccttatca tccggcatca aatggccaag      3420
     cggaaaacac ggtgaaaact gttaaaaagg cactaaaaat tattttaaaa actgagtcta      3480
     accaaagaaa tattaacgta aaattattaa aatttctgtt tgattataga aattcaacac      3540
     attgcactac gggatattca cccgcagaac taatgctcgg aaggaagttg ttttccacat      3600
     tagatttttt aaaagatact cgaacgtcac ctaattcgat gtcgttggca tctgctgcta      3660
     aaacagcagt taactataaa caagatttac aaagtaaaca atatggcggt gtacgcaatg      3720
     tttgttttaa cataggtgac caggttttag ttaaacattt ttattataat ggaaataaat      3780
     gtacatggca tttaggagta attagaagta agattggttc tagacttttt atggtataca      3840
     ttccagtgtt aaatttatta attaagaaac attttgatca attgttaaag tatackggtg      3900
     taacttgtgt tccaaaaaca gatgawgtcg gcccagtagc gaattctgaa actacattgg      3960
     atcaagtggg agagagagag aagttatcgg aggaaacaga atcatcggat cctgatgttc      4020
     taattaatgt agaccagagt aataaatcca atgtagattc aaattctagg atgggcacta      4080
     aacaggcact gcctgttgtt gataaaaaca atgttaacat attacctggt gaggacacta      4140
     ctccagtgtc cgtcacggcc gagagtggtc gaaggtatcc tattcgtaag acacggaatc      4200
     aaaaaaatgt ataattgtaa taaactagta atattgtaaa attgtaaaaa atagtttcga      4260
     ttacttgtca attggataat tgtttttatt tgtatatttt tatattattg gtggaggga       4319
//
ID   Gypsy-11_Hmel_LTR repbase;    DNA;    INV; 125 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy;
KW   Gypsy-11_Hmel_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-125
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 125 BP; 39 A; 17 C; 24 G; 45 T; 0 other;
     tgtagtgatt attataagtt gagggtaagt ctaaataaag cgttggctta ctcagttgtg        60
     atcggacatt aaacgtgtac aaatcagttg gcattttatt cttctattat ctcgaaaata       120
     ctaca                                                                   125
//
ID   Gypsy-11_LH-I repbase;    DNA;    INV; 4426 BP.
XX
AC   ADOQ01003611;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_LH_;
KW   Gypsy-11_LH-LTR; Gypsy-11_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4426
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003611; Positions    7004    2579.
XX
CC   Positions [1869-2324] - Reverse transcriptase
CC   Positions [3404-3895] - Integrase core
CC   'ATTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1782..2927
FT                 /product="Gypsy-11_LH-I_3p"
FT                 /translation="MLEADIIEECESPWAAPVVLVPKKDGTMRICIDYRRL
FT                 NAITKTDSYPMPRIDELLHLAKRSLYMSTIDLRSGYWQVSVRPTDRDKTAF
FT                 TTPFGTFRFKRMPFGLKNSGATFQRLMDQFQRGLKDTTVIVYLDDIIVISA
FT                 SFEEHLANLQKVFSRLREFKLRAKREKCNFACSQIKFLGHMITTEGIRPDD
FT                 DKVAAILNIPPPRNVKHLLTFLQTASWFRKFIPNFAAIAKPLTSLIKKNVK
FT                 WTWSEDQEDAFNKLKEALTSAPILRQVDEQLPFIIRTDASNYAIGAILAQG
FT                 EGSDERPVEYASRLLTSAECNYSTIEREALAIVWAVSKFRGYIDGAQITIG
FT                 TDHQPLKWLMSLKSPSGRLARWALSLQEYDLKITYSPGK"
FT   CDS           2927..4426
FT                 /product="Gypsy-11_LH-I_2p"
FT                 /translation="MNVVADTLSRPPCTESNKDDCGICTVVVNLPTDGAAK
FT                 LREEQLSNPEVKKIIDAFESKNDLDLANWTSRGYLMSNGVLYRYVPTEDTE
FT                 EAQWVVPKCAIDRILYENHDAPMAGHYGIDKTLKRISSKYYWPGMRKMINE
FT                 HIKKCIECGRYKPSNLKLAGLLRTPAANRRFEVLAIDLFGPLPSTSEGYQW
FT                 IFIVEDVATKWVELFPLRRATADACAKVLIDEVMLRFGIPRRIISDNGPQF
FT                 VGAVMQQVSFCLGFNQSLTPVYHPEANPVERKNRDMKVQLSILVGNEHTSW
FT                 ANKIPSIRYAMNSSMSQAARNTPAYLMFAREMRDPGEVQRDLREIVIGENF
FT                 VSEITPYLLKVADTMKEVVEVHEQEQDRHKVYADKVQRQAEVFQEGDQVMV
FT                 KTRVLSNASQGVTTKFAPKRDGPYKIAKRVSPISYQIADNVTGDLLSVHHV
FT                 SDLEAWRRTGTEETFQEPIKAIKRRGRPKKNACPSQPRQSVGSLSRAPNRS
FT                 KGGV"
XX
SQ   Sequence 4426 BP; 1460 A; 987 C; 973 G; 1006 T; 0 other;
     attggcgccc aactaaaagg ccaggttacg accgaagtcg tcacgtctaa ccaagacgtc        60
     atccccacgc aagccaactc gaccgacaac gcggtcgcaa acacgaacgc aatcgtcgat       120
     accacgtaga gtaagctcag acaaaaaagc aaaggagaaa agacaagaag ctacaatggc       180
     ggaaagtcag aacacaggta acgcaattac gttaacaaac gaacaattca tcgctcttct       240
     acaacagata cagatatctg ctacgaacgt ccccaccgca aatgccgcgc taccgcaagg       300
     taatttttcg cgatgcactt ctcgattcga tggaaaaaag acgtccgatg tagaagcttt       360
     tatcgatgcg atcgttacat acaaagaatg cacaaatata tccgacgaaa acgccctaaa       420
     gggactaccg atcctactca tggatctcgc cgcgacgtgg tggcagggtg tcaaatctac       480
     agtcaatacg tggaatgccg caatagatct gctaaaacta acatacggac ctaagaaacc       540
     ggcataccgt atctacaaag aactcttcgc gcgggaacaa gaagaaaata catcgacgga       600
     cgtatttata tgtaaagcac gcgccctcct tgctaaactt ccgtacaaca cgccgttaac       660
     ggaaagcatc caattagata tggtctacgg attattgtca tacaagattc gaaaggagat       720
     atcacgtgaa aaaattacgt cattttcgga attattagat ctcgcgaggg aagtcaagag       780
     actcgagccg aagaaaataa cgacacatct aaacaaacga tatcgtcccg taaacatgaa       840
     tcccgtctac gatgtaaata ctgcaaaagt ttcggacata cggtagacga atgcatgaat       900
     cttaaaaaga aacaagaaaa cagtccgacc acgactagca aaaaagacaa aacggattcg       960
     gatacagacg atgcgcaagc gaatagccaa cgttctcggc ctacagttac ttgtttcggt      1020
     tgcgggaatc ccgggtatct ccgtaaagag tgccctaagt gcaataagac ggataaaagc      1080
     ggcaaaggca tagcgaagcc tgatttctgc ctcgtagaca catctccgat acatgcaaaa      1140
     tgcaagaaac gaccgattct caacattgaa atattagggg cgaaaggcac tggtctgatc      1200
     gatacagccg caaaaatgag tgtcactggt tacagtctat ataaaattct aatcgacaaa      1260
     ggtcaaaaat tcaaagaaac agacgcatat atcggactgg cagacggtac gcgtagcagg      1320
     gaacacgttt tattaacaga agttgacgtt catctaatgg atcgcacgat aagtatcaca      1380
     ttccttataa taccgcacgc agaaaataat tacacactac tcggcatgga ctttatcaaa      1440
     aaagcgaaaa ttgtaataaa tgctccacag cgtatctggt attttgcaga tgaaaacgaa      1500
     ccgcgtgagc tgaactttga agcttcggaa ggaacatctg acactgtaca actgaattac      1560
     gtcgagacac taagaaacaa cgaagcccaa gttctgtcct caaatcagcg tgataaactc      1620
     aatgagtttt tgtctactaa cgaagacatc ttcgcactat ggggagagca gacaacgtac      1680
     gctgaacacg ccattgaaac aggcgataac gcaccagcag ccgtaccacc gtataaaatg      1740
     ccccgacata agaaagaata ttggaaaagg agcttaatgc tatgctagaa gcagatatta      1800
     tcgaagaatg cgaatctcca tgggcggccc cagtagtatt agtgccgaaa aaggacggta      1860
     caatgagaat ttgcattgat tatcgtcgct tgaacgccat cacaaagact gattcatatc      1920
     cgatgcccag gattgatgaa ctactgcatc ttgccaaaag atctctctat atgtcgacta      1980
     tcgacctgcg ctcaggatat tggcaagtga gcgtgagacc gactgatcga gataaaactg      2040
     catttacgac gccgtttggt accttccgtt ttaagcgcat gccttttggc ctgaagaatt      2100
     ccggcgccac gtttcaaagg ctaatggacc agttccaaag aggcttaaag gatactacgg      2160
     taatagtata cttagacgat ataatagtga tctcggccag ttttgaggaa cacttagcga      2220
     atctacaaaa agtatttagc cgtcttcgtg aatttaaact acgagccaaa cgagaaaaat      2280
     gtaattttgc atgctcacaa atcaagtttt taggacatat gatcacgacc gaaggaattc      2340
     gtccggatga cgataaagtg gcagccattc taaatatccc accgcctaga aatgtaaagc      2400
     atttacttac gtttttacaa actgcctcat ggtttcgcaa atttattccg aatttcgcag      2460
     caatcgctaa accattaaca tcgctcatca aaaagaacgt caaatggaca tggtcagaag      2520
     atcaagaaga tgctttcaac aaattaaaag aggcacttac cagcgctccc atactcagac      2580
     aagtggatga acaactaccg tttattatac gaacggacgc cagcaattac gcgataggag      2640
     ctatcttagc tcaaggtgaa ggatctgacg aaaggcccgt agaatacgcc agtcgcctac      2700
     tgacttcagc agaatgtaac tacagtacga ttgagcgcga agctctcgct atagtttggg      2760
     ctgtttctaa attcagaggg tatatcgacg gtgctcaaat cactataggc acagatcatc      2820
     aaccgctgaa gtggcttatg agcctgaagt cgccgtcagg acggttagcc cgatgggctt      2880
     tgagtctcca ggaatatgac cttaagatta catattcacc gggaaaatga atgtcgtcgc      2940
     tgatacactt tcgaggcccc cttgcacgga aagcaacaaa gacgattgcg gaatttgtac      3000
     ggtcgtcgtt aatctaccca cggacggagc cgctaaatta agagaagaac agctttcgaa      3060
     tccagaagtt aaaaagatca tcgatgcatt cgagtcaaaa aacgacctcg acctcgcaaa      3120
     ttggacttct cgcggatacc taatgtcgaa cggagtctta tatcgatacg tgccaaccga      3180
     agacacggaa gaggctcaat gggttgtgcc aaaatgcgct atcgatcgca tcttatatga      3240
     aaatcatgac gcacctatgg ccggacacta tgggattgac aaaacgctga aacgaatctc      3300
     gagcaagtat tattggcccg gaatgcgtaa aatgatcaat gagcatatca agaaatgcat      3360
     tgaatgtgga cgttataagc catcgaattt gaaacttgct ggactactaa ggacacctgc      3420
     agccaacaga agatttgaag tattggctat agatttattt ggacctttgc ctagtacttc      3480
     cgagggatat caatggatat tcattgttga agatgtcgct acaaaatggg ttgaactatt      3540
     cccattaaga cgtgctaccg cagatgcttg cgccaaggtc ttaattgacg aagtcatgct      3600
     tagattcggt attccccgtc gcattatatc agacaacgga ccgcaatttg taggagcggt      3660
     catgcaacaa gtatcgttct gtttagggtt caaccaatca ttaactccgg tctatcatcc      3720
     ggaagccaac cctgtcgagc gcaagaacag agatatgaag gttcaacttt cgattcttgt      3780
     aggtaacgaa cataccagtt gggccaacaa gataccatcg attagatacg ctatgaactc      3840
     cagtatgtcg caagccgcaa gaaacactcc agcctatttg atgttcgcgc gagaaatgcg      3900
     cgatccaggc gaagttcaac gggatttacg tgaaatagtc atcggagaga attttgtatc      3960
     agaaattacg ccatacctac taaaggtcgc agataccatg aaagaggtag ttgaagtgca      4020
     cgaacaagaa caagaccgac ataaagtata cgcggataaa gttcaaagac aggccgaagt      4080
     attccaagaa ggagatcagg tcatggtgaa aacacgtgta ctgagtaatg cgtcccaagg      4140
     agtcactact aagtttgcac ctaaaagaga tgggccttat aagatcgcta aacgggtttc      4200
     acctattagt tatcaaatcg cagataatgt tacaggtgat ttgctttcag tccatcacgt      4260
     ttccgattta gaagcttgga gaagaactgg gacggaggaa acatttcagg aacccatcaa      4320
     agccattaaa aggcgtggtc gacctaaaaa gaatgcctgc ccttcacaac ccaggcaaag      4380
     tgttggatct ttgtcgaggg ctcctaacag atccaaaggg ggagtc                     4426
//
ID   Gypsy-11_LH-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   ADOQ01003611;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_LH_;
KW   Gypsy-11_LH-I; Gypsy-11_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-229
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003611; Positions    2578    2350.
XX
SQ   Sequence 229 BP; 63 A; 54 C; 51 G; 61 T; 0 other;
     tgtaacacga gaggtccttg cacgcgttct aaaactgcgg ccctgagggg gcgctagcaa        60
     gaagtcacgg tggcgccagt cgttgtagag cgagtcaaaa aagaaggctg tataacctaa       120
     actgtattgg aaatatatct cagttttttc cttacttaaa ttcttctttg agcgtcgtac       180
     aacctgtcaa gtactcacat atcccaacgg tcacccattg atcgttaca                   229
//
ID   Gypsy-11_LMi-I repbase;    DNA;    INV; 4754 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4754
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3379-3379 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..1019
FT                 /product="Gypsy-11_LMi-I_1p"
FT                 /translation="MINDMTTTEQILAALVEQQKLLINNVIELPKALAAAL
FT                 QAFLTMPHHNNTPVLNIPMFTPYEESAEDWIDYEKRLRQHFIAFSVDDPQL
FT                 RKSLFLSWISPKLYQLLAQLAPLKEPSSLTFDEMCSLLTSYYRKQTHVVAS
FT                 RVAFYQCKKKPDQTYRAWAAELQGLSRKCQFVTEKHNESYAHHMVRDAILR
FT                 SAPDREVRQRALQLVNPTLEEVLNIASTFEITRSAGAQIDSWGDVCELQSD
FT                 KAPYDVTMQDEVDDVAIVQSSVRNRKGKQQTDLRKSSLPVIRRCPHAPVAS
FT                 HNTHGKIAPSVGPRVTTATRKVMCLLSVVLEMCN"
FT   CDS           1130..4261
FT                 /product="Gypsy-11_LMi-I_2p"
FT                 /translation="MQVDTGSAATLITAQTYATLGSPPLSPVSRNLRTYNH
FT                 QQISLLGELEVDMTYKSVSRTLKVFVVDRSGSENLFGYDAFKLFGFSVDDT
FT                 VHVVSEEIPYSQLEELSREYSSLFSPGLGRASNFEAHITLKPAARPKFFRA
FT                 RLVPVSMRDDVKREIDRLAAAGVLLPVTASEWAAPVVVVRKPNGNLRLCGD
FT                 FKAAVNSQCLIDTYPMPRPEELFSKLAGGQYFSKIDLSEAYHQLPLDEASR
FT                 AFLVINTPFGLYQYQRLPFGVASAPAIFQRFLEQLLAHVPGCINYQDDIVV
FT                 TGTNTAEHLRNLKTLFSVLQEAGIKCNFQKSQFFQPSVVYLGFQLSKEGIR
FT                 PLKDDVAAIEALPRPTNVKDLQAFLGALAYYHKFLPSVAEVAHPLHRLLKK
FT                 NVPFQWSDNCERAFTRLKTLLRTAPCLATYTPGQMLVLATDASQHGIGAVL
FT                 AHRYADGSERPIAYASKTLNEAQQKYSQIEKEALAIVYALQKFSVFLYGSK
FT                 FHLITDHKPLVSLFNPNSSLPDKAAHRLQRWALYLSRFHYEIHFRPTSQHA
FT                 NADVLSRLPHGPDPIFDRDELLCFHLDDEENKAVEGFPITGERIAAATEAD
FT                 PVLRKVLQHIAVGWPERPPGKASDPLRNYFHLRYRLTARNGVVLLATDYTT
FT                 PRVVIPAGLRREVLRLLHQGHWGVTRTKNLARRHVYWPGIDSAICHMVASC
FT                 TACAQQAQAPKSSTTTWPTPTLPWERIHIDYAGRFLGAFWLLVIDAYSNFP
FT                 FVTRISSPSSESTIQALNKIFALEGLPNTIVSDNGPQFTSTEFSQFCLQRG
FT                 IKHVTSPPFHPQSNGEVERQVRTFKNQMKKLLTSSSNEDALTTFLQTYRFT
FT                 PAGNHSPAELLHGRQPRTLLHLIRPPGDTLQPIPPGKFKIGAPVWVRSYGR
FT                 QQKWIQGSVIHQQGSHMYRVQTADGDVARHVDQLRSRIPSSPEDSPRPSQE
FT                 PMDVDVDILPPPGHSSASSQAPGVSRDAAPLSSTPPPAQEAPPTPASPTFP
FT                 SLRPQPAEMSPVLGSRAQFHRRGHYRPYARFHLANSPR"
XX
SQ   Sequence 4754 BP; 1247 A; 1312 C; 1016 G; 1178 T; 1 other;
     ctattggcga cgtaggggga tatacgagaa gtcctacgaa aatgataaac gacatgacta        60
     cgacggaaca aatattagct gctctggtag agcaacagaa actgcttata aacaacgtaa       120
     tcgagctgcc gaaggccctc gccgcggcac tgcaggcatt tctcactatg ccacatcaca       180
     acaacacacc agtgctgaac ataccgatgt tcacacccta tgaagaatct gcagaagatt       240
     ggatagatta tgaaaagcgt ctacgccaac atttcatcgc cttcagcgtt gatgatccac       300
     agctccgtaa gtctctcttc ttgtcttgga tatctcctaa actgtatcag ttgctggccc       360
     aacttgcccc tctcaaggaa ccgtcttctt taacatttga tgagatgtgc tctctcctta       420
     cgagttatta ccgcaagcaa acacatgtag tggcttcccg cgtggccttc taccaatgta       480
     aaaagaaacc tgaccagacg tatagggcat gggcggccga actacaagga ttaagccgca       540
     aatgccaatt tgtcacggaa aaacacaacg aatcttatgc ccaccacatg gtacgggatg       600
     ccattttacg ctctgcacct gatcgtgaag tcagacaacg cgcattgcaa ttagtcaatc       660
     ctactttaga agaagtgctt aatattgcat ccacttttga gataactcgc tccgctggag       720
     cacaaattga ttcatggggt gatgtttgcg agttgcagtc ggataaggcc ccctatgacg       780
     tcaccatgca ggacgaggta gacgacgttg ctatagttca atcctccgtc cgcaacagga       840
     aaggtaaaca acaaacggat ttaagaaaaa gctcactacc agtaatacgg cgttgccctc       900
     atgctcccgt tgcttcacac aacacacacg ggaagattgc ccccagcgtt gggccacgtg       960
     tcacaactgc aacaagaaag gtcatgtgtc tgctgtctgt cgttctagaa atgtgcaact      1020
     agttcaagac agggaagatg aggatacatc agtctacttc gtgaactcca ctttaccttc      1080
     ctccaacaag ttgtttattg atgtcaaact tttaggacga gaggttcaaa tgcaggtcga      1140
     tacaggttct gcagctacct tgatcactgc tcaaacttac gccacactcg gttctccacc      1200
     cctgtcccct gtatcgcgaa acctgagaac ttacaaccac cagcaaatat cactgttagg      1260
     cgaacttgaa gtcgacatga cttataaatc agtatctcgc acacttaagg tatttgtagt      1320
     agatcgttct gggtctgaaa atctctttgg ttacgacgct ttcaagcttt tcggattttc      1380
     cgtggacgac acagtgcacg tcgtatccga ggaaattcca tattctcaat tagaggaatt      1440
     atctcgtgaa tactccagtc ttttttcgcc tgggctcggg cgcgcgtcaa atttcgaggc      1500
     acatatcact ttaaaaccgg cggcccgtcc caaattcttt cgcgcgcgcc tagtaccagt      1560
     atccatgcgc gatgacgtca aacgggagat agaccggctt gctgcggcgg gtgtgttatt      1620
     gccggtcacc gcgagtgaat gggccgcgcc tgtagtagtc gtccgtaaac cgaacggcaa      1680
     cttacgcctg tgcggagatt tcaaggcagc tgtaaactca caatgcttaa tagacacata      1740
     tcccatgccc cgcccggaag aattattttc taaactcgcg ggtgggcaat atttttccaa      1800
     aattgatctc tcggaggcct accatcaact accgctcgac gaagcttcac gtgcattttt      1860
     ggtgatcaat actccgttcg gcctatatca atatcagcgt ctcccgttcg gagttgccag      1920
     tgccccagcc attttccaac gttttcttga acaattgttg gctcacgtcc caggctgtat      1980
     taactaccaa gatgacatag ttgtgacggg caccaacaca gccgaacacc ttcgtaatct      2040
     gaaaaccctt ttttcggtgc tacaggaggc tggcataaaa tgtaacttcc agaaatcgca      2100
     gttttttcag ccatcggttg tctatctagg gtttcagtta tccaaagagg gaatacgccc      2160
     actcaaggat gatgtcgccg ccatagaggc cttgccacgc cctacaaatg taaaggactt      2220
     acaagctttt ttgggggcac tggcgtacta ccacaaattt cttccgtcag tcgcagaagt      2280
     cgcacaccca ctacacagac ttctcaagaa aaacgttcct tttcaatggt cagacaattg      2340
     tgaacgggcg ttcacacgcc tcaaaacctt gcttcgcaca gccccatgtt tagccacgta      2400
     caccccaggt caaatgttag tccttgcaac agacgcatcg cagcacggca taggcgcggt      2460
     cttggcgcat cggtatgctg acggctctga acggcctatc gcatacgcct ccaaaacatt      2520
     gaacgaggct cagcagaaat actcacaaat cgaaaaggaa gcccttgcaa tcgtttatgc      2580
     tctgcagaag ttcagtgttt tcttgtacgg aagtaagttc catctcatta ctgaccataa      2640
     acctttggta tctttattca atcccaattc atcactccct gacaaggcag cacatcgcct      2700
     tcaacgttgg gctctttatc tttcacggtt ccactatgaa attcatttca gaccaacgtc      2760
     ccaacatgca aatgctgatg tcctgtcgag actcccgcat ggacccgatc cgattttcga      2820
     tagagatgaa ctattatgct tccatcttga cgatgaagaa aacaaagccg ttgaaggttt      2880
     ccccattacc ggtgagcgca ttgccgccgc tacagaagcc gatccagtgc ttcgtaaggt      2940
     tctccaacac attgccgtag gttggcctga acgtcctcct ggcaaagcct ctgaccccct      3000
     tcgcaactat ttccacttac gctacagact tacggctcgt aacggcgttg ttctgctcgc      3060
     tacggactac accacgcctc gagtcgtcat accagctgga ctccgccgcg aggtgctgcg      3120
     actacttcac caaggacact ggggcgtcac tagaacaaaa aacctcgccc gtcgacacgt      3180
     ctactggccg ggcatcgact cggcgatctg tcacatggtt gcctcctgca ctgcatgtgc      3240
     ccagcaggcg caggcgccaa aatcgtccac caccacctgg ccgacaccga ctcttccttg      3300
     ggaacggata cacatcgact acgccgggag gtttcttggc gccttctggc ttctagtaat      3360
     cgacgcttat tcaaactttc cttttgtaac ccgtatctca tcaccctcat ctgaatccac      3420
     tatacaagct ctaaataaaa tattcgccct tgaagggctg ccaaacacca ttgtctctga      3480
     caatggccca cagttcacat ccactgaatt ctcccaattc tgtttacaac gtggcataaa      3540
     gcacgtcacg tcacccccat tccacccaca atccaatggt gaggtggaaa gacaagtccg      3600
     cactttcaaa aatcagatga agaagctcct aacctcatcc tctaatgaag acgcactcac      3660
     tacctttctc caaacctacc ggttcacacc agccggaaat catagtccgg cggaactgct      3720
     tcacggacgc caaccacgca ccctacttca ccttatccgt ccacctggtg ataccttaca      3780
     accgatccca ccaggcaaat tcaagattgg ggcaccagta tgggtgcgca gttatggccg      3840
     ccagcaaaaa tggattcaag gaagtgtaat ccaccaacaa ggcagccaca tgtaccgagt      3900
     gcagacagcg gatggggatg tggctcgtca cgtggaccag ctacgatcaa gaataccgtc      3960
     atcacccgaa gactcccccc gaccaagcca ggaaccgatg gacgttgatg tcgacattct      4020
     cccaccgccg gggcattcat cagcatcttc ccaggctcca ggcgtcagta gggacgccgc      4080
     gccgctgagc agtaccccgc cgccggcgca agaagccccg ccgactccag cgtcccccac      4140
     atttccatcg ctgcgccctc aaccagcgga gatgtcaccg gtcctgggat cgcgggcaca      4200
     attccatcgg agaggacact atcgaccata cgcccggttc cacctcgcga attcgccgcg      4260
     gtaggcgaag acagcatgga tgtgagcgtt gttcaacaat cagtgtcagt gcgtcgaaaa      4320
     gcagtgcata atccaaaggt gtagtgatat gccaaccagt gcaataaaaa aatttttttt      4380
     gttctgtttc tttcaatgtc tccttttgtt tccctttgtg tacaacaaaa agtgtcaaca      4440
     cacaatctgt gactaaactg tatgctgttg tgctaaagta ataataatta atatttacaa      4500
     gttcctgtgc tgcgcacatt cttcagctga cctagcaaag acttaaaata ttgctkgcct      4560
     aattaaagag atgctcatcc tcctattgac ttactttgaa tcggtgatat ctgtaaattg      4620
     cttatttgga ccctcattta cgagtgctcg aaagttgttg agaaatgatg tttatttgtt      4680
     gctgttacac atgtactctc gtcattaagg aaatttgtct tttgaacata tgtaaaattt      4740
     gcacggggga gatg                                                        4754
//
ID   Gypsy-11_LMi-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-211
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3380-3380 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 211 BP; 47 A; 62 C; 60 G; 42 T; 0 other;
     tgtagaggct gcgcctcgta catatccgcc gccactcgcc ggctagccgc atagcggcgc        60
     tgcccaccag ccggttacac gctagcgcca actaggcggc cggcgggcga ggccgcggtc       120
     agtctaaatc cagctccggg acaagcaact gacttgtggt tcaatcatgt gtacttgtga       180
     agtttaataa aggtttgaca aggttacaac a                                      211
//
ID   Gypsy-11_MeUr-I repbase;    DNA;    INV; 4285 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4285
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3035-3035 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4238
FT                 /product="Gypsy-11_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MFANTTMMFGGSLAFDHRSQEWSIFRSRFIQYCTAND
FT                 INSNTDKSGVKRRALLLTAMVEETYRVTKDLVFPADLDNMEYETLLQKLSN
FT                 HFQSKRSTFAERFIFYKAEQRPGEDLAEWAARVRSLAQFCGFKSELETALR
FT                 DRFVLGLENAKEKEKLFAEDIETLTFSKALELAQGVHCARMALQSTQNSAV
FT                 VPVEPSAQPVYAIRAATNNSAAGVITNNKVNASRMARCCDVCGYKNHSSEK
FT                 CRFINYTCQKCNKKGHLKRVCKSKAMDSNYLGVDDDNLLEGIYDLFNIVDP
FT                 DRNGPILRNALIGGKQIVCEIDCGSSVSVLPKSVYQQYFDGKSYNLVPCNI
FT                 MFNFYTGVQISPEGCLTLPITFEGCTKSIKFFVISTNVKRSPLLGRDFMKL
FT                 FNLHICGLNCNSLVISKEDSKYFMKKYYELFSDELGKFNKYKVSLKLKPEA
FT                 QMKFFKPRPVPLAIKPKVEQELKRMVELGILEKVDHSDVATPIVPVLRPDG
FT                 NVRICGDFSVTLNKYLYLDHFTLPRIEDLFAKLHGGVEFSKLDLSRAYSQL
FT                 ELDESKKLTCINTHIGLFCYNRLVFGLANAPFIFQRTMEHLLGDIEGVCIY
FT                 IDDILITAPNRVTHLNRLNEVLKRLQEAGLRLKRDKCELFKESVEYLGFII
FT                 DKSGLHKSKQKVEAILKCSPPKNATELKSFLGMVNYYRCFVPQTSSVLSPL
FT                 HKLLQKENKWAWTKEHEEAFFKRIKQELASDRVLAHYNPEYTTIVTCDAGP
FT                 AGLGAVLAQRQPDGSEHVVAYASRSLCKAETNYAQIQKEATAIVFAIKKFH
FT                 HYLYGRTVPFILRTDHKPLLAIFGNKKGVPILAANRLQRYALFLSAYNFIL
FT                 EYVKGENNVADFLSRAIDSHIVNDTDDRVDNSLYINFIGKSILLPVTVEDI
FT                 KRETGRDALLQKVCEFINKGWPAKINDNILKPYCVCRRELAVENGCILRGH
FT                 KVIIPSIFRETLLNELHSSHFGIVKCKSEARSRMWWPNIDRDIEEKIGSCS
FT                 ICNTMRSNPPHAPLAPWPFPKKVWERIHVDMFLLSGRHYLIVIDAYSKWVE
FT                 CFLMXKTDSEAVISQLCELFSRFGLVHTLVSDNASNFTSEAFESFCRLNGI
FT                 KHLTIAPYHPASNGQAENTCKTVKTGLKAILANNSNPKVIASNLNKFLFDY
FT                 RNSVHLTTGFSPAQLMLGRPLRCRLDLLREPDTLPSSSSAAVKDNVAKKQD
FT                 VYSKHYRGKRIVNFNIGDRVLVKHFYNNGNKFCWKYGLVKGQLGTRMFNVF
FT                 IPELNSIVKKHIDHLLAYKGSSSADVLDNISCCGFEEHAFYRAASEPKLSN
FT                 TTPTPGPDLEVSDDYSFGATAPSSSTPVRDVSLAEGEEDSSEDEFLDPVEQ
FT                 FDNSNAEPEFVRRYPIRSTRNFVNYKC"
XX
SQ   Sequence 4285 BP; 1298 A; 705 C; 941 G; 1340 T; 1 other;
     ttttggcgac gattaacttc acgcgtgttg tgaatatctt attaattatt ttagtggaag        60
     tgcgtaaaat gtttgcaaat acaaccatga tgttcggtgg cagcctcgcc tttgaccatc       120
     gctcccaaga atggagtatt tttcgaagtc gttttatcca gtactgtacg gcgaatgaca       180
     ttaatagcaa caccgataag tctggagtga agcggcgggc gttacttctg accgcgatgg       240
     tggaggaaac atatcgcgta actaaggatt tggtgtttcc ggcggatctt gataacatgg       300
     aatatgagac gttgttacag aaattgtcga atcattttca gtccaagaga agtacttttg       360
     ctgaaagatt tatcttctat aaagctgaac aacgtccagg agaagatcta gctgaatggg       420
     ctgcgcgagt ccgtagtttg gcgcaatttt gcggtttcaa atcggaatta gagacagccc       480
     tgcgtgatcg gtttgtttta gggttggaga atgcaaagga aaaagagaaa ttgtttgcag       540
     aagacatcga gacattaact ttttcaaagg ctttggagtt ggcgcaaggt gtgcattgcg       600
     ctcgaatggc actacaatcg acgcagaata gcgccgtggt acccgtagag ccatcagcgc       660
     agcccgtcta tgcgatacgg gccgcaacga ataacagcgc tgctggtgtc atcacgaata       720
     ataaagtgaa tgcatcacga atggcaagat gttgcgatgt atgtggttac aaaaatcatt       780
     cgtctgaaaa gtgtcgtttc attaattata catgtcagaa atgtaataaa aagggtcatt       840
     tgaagcgagt atgtaagtct aaagctatgg acagtaatta cttaggcgta gatgatgaca       900
     acttgttaga aggtatttat gatttgttta atattgttga tccggatagg aatgggccaa       960
     tattacgaaa tgccttaata ggaggaaaac aaattgtatg cgaaattgac tgtggtagtt      1020
     cggtatctgt tttacctaag tcagtgtatc aacagtactt tgatggtaag agctataatt      1080
     tggttccttg taacataatg tttaattttt atactggagt tcaaatatcg cctgagggtt      1140
     gcttgacatt gccgataact tttgaaggat gcactaagtc aattaagttt tttgttatat      1200
     caacaaacgt aaaacgttca ccccttttag gccgagattt tatgaaatta tttaatttgc      1260
     atatatgtgg actgaattgc aacagtttgg ttatttcaaa ggaggacagt aagtatttca      1320
     tgaaaaaata ctatgagctt tttagtgatg agttaggtaa attcaataaa tacaaggtaa      1380
     gccttaagct taaaccggaa gctcaaatga agttctttaa accacgtcca gttcccttag      1440
     ctattaaacc taaagttgaa caggaattaa aaagaatggt agaactaggt attttagaga      1500
     aagtggatca ttctgacgtt gccacgccta tcgttccagt tttgcgtcca gacggaaacg      1560
     tcaggatttg tggagatttt tctgtaacgc ttaataaata tctgtactta gaccatttta      1620
     ctctaccgcg tattgaagat ttgtttgcta aacttcacgg aggggttgag ttctcaaaac      1680
     ttgatttatc acgtgcttac tcgcaattag aattagacga atcaaagaaa ttgacatgta      1740
     taaatactca tataggtttg ttttgttaca ataggttggt gttcggtttg gcaaatgcac      1800
     cttttatttt tcaacgtaca atggaacatc tgctcggaga tattgaggga gtatgtattt      1860
     acattgacga catattaata acagctccta atagggtaac tcatttaaac agattaaatg      1920
     aggtattaaa acgtttacag gaggctggat tgcgtttgaa gcgagacaaa tgtgaattat      1980
     ttaaggaatc agtggagtac cttggtttta ttatagataa aagtggactt cataaatcga      2040
     aacaaaaggt tgaagctatt ttaaagtgta gtccgccgaa aaatgcaact gaattaaaat      2100
     cttttctggg catggttaat tattaccgat gttttgttcc acagacatca tccgttttaa      2160
     gtcctttaca taaattatta caaaaagaga ataagtgggc ttggactaag gaacacgagg      2220
     aggctttttt taaaagaatt aaacaagaac tagcttctga tcgtgtcctc gcgcattaca      2280
     accccgagta caccaccata gttacgtgtg acgctggccc ggccgggctg ggcgccgtgc      2340
     tggcgcaacg gcaaccggac ggcagcgagc atgtggtggc gtatgcgtca cgctctcttt      2400
     gtaaggctga gactaattat gcgcagattc agaaagaagc tactgctatt gtattcgcta      2460
     ttaagaagtt ccatcattat ttgtatggtc ggacagtacc tttcatttta aggaccgacc      2520
     acaagcctct tttagctatt ttcgggaata aaaagggtgt acctatatta gcagcgaaca      2580
     gattgcagcg ttatgctttg tttttatcag catataattt tattttagag tatgttaaag      2640
     gtgaaaataa tgttgctgat tttttgtcac gtgctattga ctcccatata gtgaacgata      2700
     ctgatgatcg tgtagataat tctttatata taaattttat tggaaagtca attttgctcc      2760
     cagtcactgt agaggacata aaacgagaaa ccggtcgtga tgctctgtta caaaaggtgt      2820
     gtgaatttat taataagggt tggcctgcaa aaatcaacga taatatttta aaaccatatt      2880
     gtgtttgccg tcgtgaactt gcagtagaaa acggttgcat tttacgcggt cataaagtta      2940
     ttattccttc aatatttaga gagactcttt tgaatgaatt acatagttct cattttggaa      3000
     tagtgaaatg taagtcagaa gcgagatctc gtatgtggtg gcctaacata gatagggaca      3060
     tagaagagaa aattggctca tgtagcattt gtaatacaat gcggagtaat ccaccacatg      3120
     cacctctcgc accatggcct ttccctaaaa aagtgtggga acgcatccat gtagatatgt      3180
     ttttattgag cggtaggcat tatttaatcg taattgatgc ttattctaaa tgggttgaat      3240
     gttttctgat gatsaaaact gatagcgaag cagttattag tcagctctgc gaattatttt      3300
     ccagattcgg cttagtgcat actttagtaa gcgacaatgc ctcgaatttt acgtcagaag      3360
     catttgaatc tttttgtcgt ttaaatggaa taaaacattt aacaatagcg ccgtatcatc      3420
     cggcttcgaa tggacaggcg gaaaatacat gcaaaacagt aaaaactggt ttgaaagcta      3480
     ttttggccaa taatagtaat ccaaaagtta ttgcttcaaa tttaaataaa tttttatttg      3540
     attatcggaa ttctgttcat ttaactacag gattttcgcc tgctcagttg atgttaggtc      3600
     gacccctacg ttgtcggctc gatctattgc gagaaccaga tacactacct tcgtcgtcgt      3660
     cagccgccgt taaagataat gtagctaaaa agcaagatgt ttatagtaag cattatagag      3720
     gtaaaaggat tgttaatttt aatattggag acagagttct agttaagcat ttttataata      3780
     atggtaataa attttgttgg aaatatggat tagtaaaagg tcaattaggt actcgaatgt      3840
     ttaatgtttt cataccagaa ttgaattcta ttgtaaagaa acatatcgat catttgctgg      3900
     cgtacaaagg aagctcatca gctgatgtac ttgataatat tagctgctgt gggtttgagg      3960
     aacacgcatt ctatcgagcg gcctcagaac caaaattgag caacacaact ccaacacccg      4020
     gccctgactt agaggtttcc gacgactatt cattcggtgc tactgcgccg tcctcatcga      4080
     cacctgttcg ggacgtttct ttagcagaag gggaggagga tagttccgaa gacgagtttt      4140
     tggatcctgt tgagcaattt gacaattcta atgctgaacc tgagtttgta cgccggtatc      4200
     cgattaggtc aacgagaaac tttgttaatt ataagtgtta aattggttat tttatattta      4260
     tattttgtat ctagtcgggg agaga                                            4285
//
ID   Gypsy-11_MeUr-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-153
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3026-3026 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 153 BP; 54 A; 20 C; 21 G; 57 T; 1 other;
     tgtaatatat gcaacctctt tgacatatta caatagtcta tgtgtgatat aaaaaagcaa        60
     attgggkctg tcatcttaaa agtactaaaa gaatagagtt gttttgctgt atttatttcg       120
     ttttattaca acatctttca caaatacatg ata                                    153
//
ID   Gypsy-11_MoPha-I repbase;    DNA;    INV; 4984 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4984
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1091-1091 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..946
FT                 /product="Gypsy-11_MoPha-I_1p"
FT                 /note="gag."
FT                 /translation="MRPAAIKVNIEKYDETAAEDTSEDDRETVLEETPRAR
FT                 RRKKMSDATDLLDTVRKWGIQFDGKDGVAFLERLEDFRISYELTHAQLQRC
FT                 LPLLFKDQALLWYRNNRDDWHVWDDFERSFRQYFAPAKTRFELEAEIARRT
FT                 QGTNETAREFVTALQTLMRRYGRMPPEDRLERIYHNLRPEYHLYIRRTDFI
FT                 DLSGMLRLADDYERARQYERSYQAPEKSKDKAKASVAAIAPAYDPRECCWG
FT                 CGQRGHTRRYCKRPPKLFCSQCGKEGVLTRNCHGTPGNDKQAEGTEGGPRS
FT                 TSTDAST"
FT   CDS           760..4047
FT                 /product="Gypsy-11_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VLLGLRPARAYPPILQTTAEAVLLSVRQRRGADAQLP
FT                 RHTGKRQAGRGNRGGPPVYQHGRQHLKSQLPSINPRNTPTDPRPQGSIEIA
FT                 GRQYTALLDCGAVLSYLAPDTAEQVRSHARVRSISAAVHLADGRTATIKEE
FT                 LHAQVRIGHYRGWHTFHVLPGLTSAVIAGINLLRKAGFRWDLPEIAVLTPD
FT                 DEPTAGLAPCTPAQQQELEALLGEYLPKFERLRGTTPFTQHRIRLREGQEP
FT                 IRQRYRTFNPAMQSIVDKEIDAMLKEGHIEPTSSPWNSGVVLAKKKDGRYR
FT                 FCIDFRKVNEVTERDAYPLPPVQHILDQLREARFLSTIDLKNGYWQVSLQP
FT                 TSRPMTAFAIPGRGQFQFTVMPFGLHAAPATFQRLLDRVIGPDMEPRAFAY
FT                 LDDIVVLGKTFEEHLRNLREVLQRLLRANLKINPDKCHFARTSLRYLGHVV
FT                 DREGLRTDPEKVKAIMDIPPPTSLPALRRFLGMTSWYRRFIPQIATTAAPL
FT                 NDLLRKGKRWEWSTPQQQAFEKIRNCLATAPVLQCPDFSVPFVLQTDASDA
FT                 GLGTVLTQNIQGEERVIAYASRALRAAEKHYSATEKECLAVVWGIEKMRPY
FT                 LEGYKFTVITDHFSLRWLRSLDNPTGRLARWAVALQQHDFTVEYRKGALNH
FT                 VPDALSRQPLEEGEEEEEDTAGQDLAAILPCKWHQRILQAVQEDPRKYPDY
FT                 QVQGDRLYRHFHERHSTDEDTETSAWKLCLPLPLREEALKECHDAATAGHL
FT                 GITKTLARLAQRYYWPGMFRQAANYVRRCTNCREHKPVQRQTAGLLHHATV
FT                 DAPNVTVAIDLIGPLPRSSEGHTWILVCQDVFTKWITTRPLRQATASAVTR
FT                 AVERDIVLQHGCPRRIITDNGRQFESREFRDMVAQAGIEHRKTPPYSPQCN
FT                 PVERANRTLKTMIAQFIGQDHRQWDRHLPQLTFAANTAIHESTGYTPAMLT
FT                 YGRELTAPGTLRAKHEQTLGDAPTDRPTARVRKIRQMREQFEIATRRQEEA
FT                 TAKQARYYNLRRRNWRPDIGQHVYRREHPLSNAQEHFAGKLAPRYSGPYTV
FT                 DKHISPVIVRLRDQHDKIIGTAHVKDLKDAETPRDREDI"
FT   CDS           4035..4937
FT                 /product="Gypsy-11_MoPha-I_3p"
FT                 /translation="PGGYIRRRVAEQRKTVSMGKCRSTLRERLARAVARPP
FT                 RIPVSKRPFEATARPSQPKQPNGQTTDQPSATGQGTPAPTPRTARRPPTIR
FT                 QRTVRSRQERLYDPAPDNVAAARQATLLATFGSTLSDLDDDDDDNGGNKVT
FT                 AEHVTPAPAPMPDIASLTITEPSAVPPEDTPSAPPPPSVLPTPPPTPRPTP
FT                 PPTPLPVTPMPPPTQPALLLMTPAPPSTPPAPLPAPGYFTGPPPPESTPAA
FT                 PPPPGPPAPPAVAIPDGSFPEDALRTVPWDRIRPGQRYRHHVRGQKIVIRR
FT                 RRDGSWLLK"
XX
SQ   Sequence 4984 BP; 1237 A; 1682 C; 1374 G; 691 T; 0 other;
     aatggcgccc gaacagggac tcgaataagt gaggatacga accgccgcaa tgagacccgc        60
     cgcaatcaaa gttaacattg agaagtacga cgaaaccgca gccgaagaca ccagcgagga       120
     cgatcgcgaa accgtcctgg aggaaactcc ccgcgcacgg cgacgaaaga aaatgtcgga       180
     cgcaacggac ctcctcgaca ccgtccgcaa gtggggcata caatttgacg gcaaggatgg       240
     ggtcgccttc ctggaacgcc tagaggactt ccgcataagc tacgagctaa cgcacgcgca       300
     actacagcgg tgtctgccat tattgtttaa agatcaggca ttgctgtggt accgcaacaa       360
     ccgggacgac tggcatgtat gggacgactt tgaacgaagc ttccggcagt acttcgcacc       420
     cgccaagaca agattcgaac tcgaggccga gatcgcccgc cgtacgcagg gcacaaacga       480
     gacggcacgg gaattcgtga ccgcgctgca gacactcatg cgcaggtacg ggcgcatgcc       540
     accggaagac agactcgagc ggatatacca caacctacgg ccggaatatc acctctacat       600
     ccggaggacc gattttatcg acctctcggg gatgctacga ctcgccgacg actacgagcg       660
     cgcccgccag tacgagcgaa gctaccaggc accggaaaaa tccaaggaca aggcgaaggc       720
     ctccgtcgcc gccatcgctc ccgcctatga ccctcgtgag tgctgctggg gctgcggcca       780
     gcgcgggcat acccgccgat attgcaaacg accgccgaag ctgttttgct ctcagtgcgg       840
     caaagaaggg gtgctgacgc gcaactgcca cggcacaccg ggaaacgaca agcaggccga       900
     gggaacagag gggggccccc ggtctaccag cacggacgcc agcacctgaa gagccaacta       960
     ccgagcatca acccccgcaa cacaccgacc gacccacgac cgcaggggag catcgagatc      1020
     gccggccgcc agtacaccgc cttactagac tgcggggccg tcctatccta cctggcaccg      1080
     gacaccgccg agcaggtgcg atcacacgct cgagtacgat cgatctccgc cgccgtacac      1140
     ttggccgatg gccgaaccgc cacaatcaaa gaagagctgc acgcccaggt ccgaataggc      1200
     cactaccgtg gatggcacac gttccatgtg ctgccaggct tgacctccgc cgtcatagcc      1260
     gggataaatc tgctccgcaa ggccggtttc cgatgggacc taccagagat cgcagtactg      1320
     acaccggacg acgagccaac cgccggactc gccccgtgca cgcccgcaca gcagcaagag      1380
     ctcgaagccc tcctagggga gtacctaccg aaattcgagc gactgcgcgg caccacgccg      1440
     tttacccagc accgcatacg gctacgcgag gggcaggagc cgatccggca aagataccgg      1500
     accttcaatc ccgctatgca gagcattgtg gacaaggaga tcgacgcgat gctcaaggag      1560
     gggcacatcg aaccaaccag cagcccgtgg aactccggag tcgtcctagc taagaaaaag      1620
     gatgggagat accgcttttg catagacttc cggaaggtca acgaagtaac cgagagagac      1680
     gcctatccgc ttccgccggt tcaacacata ctcgaccagc tccgagaggc ccggttcctg      1740
     tccaccattg acctgaagaa cgggtactgg caggtctcac tccaacctac gagccgacca      1800
     atgaccgctt tcgccatccc gggcagggga cagtttcaat tcaccgtcat gccgttcgga      1860
     ttgcatgctg ctccagccac cttccagcga ctacttgacc gcgtcatcgg gccagacatg      1920
     gagccacgcg ccttcgctta cctggacgac atagtagtcc taggaaagac gttcgaagag      1980
     cacttgcgaa atctacgaga agtactgcaa cggctactaa gggccaacct gaagatcaac      2040
     cccgacaagt gccacttcgc acgcactagc ctcagatacc taggccacgt cgtcgaccga      2100
     gaggggctga gaaccgaccc ggaaaaagta aaggcgataa tggacatccc gccgcccacc      2160
     tccctgccgg ccctccgaag atttctgggg atgacatcgt ggtaccgccg cttcattccg      2220
     caaattgcca cgaccgcggc accgctgaac gacctgctca ggaaaggcaa acggtgggaa      2280
     tggtcgaccc cacagcaaca ggcgttcgag aaaatcagga actgcctggc caccgcccca      2340
     gtgctacaat gcccggactt ctcggtaccg ttcgtcctgc aaaccgacgc cagcgacgca      2400
     ggcctgggga cagtcctcac gcaaaacatc caaggagagg aacgagttat agcctacgcc      2460
     agccgagccc tgcgagctgc cgaaaaacac tactcggcta ccgagaagga atgcctcgcc      2520
     gtcgtgtggg gaatcgagaa gatgcggccg tacctggagg gctacaaatt cacagtgatc      2580
     accgaccatt tctcgctcag atggctacgg tccttggaca acccgaccgg ccgcctggct      2640
     cgctgggccg tagcactgca gcagcacgac ttcaccgtcg agtaccggaa aggggccctc      2700
     aaccatgtgc cggacgcgct gtcacgccag ccccttgagg agggggagga agaagaggaa      2760
     gataccgccg gacaagacct ggcagccatc ttgccctgca aatggcacca gcggatacta      2820
     caggccgtac aagaggaccc gcgcaaatac ccggactacc aagtgcaagg cgaccgctta      2880
     taccggcact ttcatgaacg ccactcaacc gacgaggaca ccgaaacatc cgcctggaag      2940
     ctctgtctgc cgctaccgct gagggaagag gcactgaagg aatgccacga cgccgctacc      3000
     gcaggacatc taggaataac aaagaccctc gctcgactgg cgcagagata ttactggcca      3060
     gggatgttcc ggcaagccgc caattacgtg cgacgatgca caaactgccg ggaacacaag      3120
     cccgtacaac gacaaacagc cgggcttcta caccacgcca ccgtcgacgc cccaaacgtg      3180
     accgtcgcca tcgacttgat agggccacta ccgaggtcat ccgagggcca cacgtggata      3240
     ctggtctgcc aagacgtgtt caccaagtgg atcaccacca ggcctttacg acaagctacc      3300
     gcttccgccg tcacacgagc tgtcgaacga gacatcgtcc tccaacatgg atgcccaaga      3360
     aggatcatta cagataatgg acggcaattc gaaagccgcg agttccgcga catggtcgcc      3420
     caggccggaa tcgaacaccg gaaaacgccg ccatactcgc cccaatgcaa ccccgtcgag      3480
     cgggctaaca ggacattgaa gacgatgatc gcgcagttca ttggccagga tcaccgccaa      3540
     tgggaccggc acctgccaca gctaacgttc gccgccaata cagccatcca cgagagcacg      3600
     gggtacacac cggcaatgtt gacgtatgga cgggaactta ctgcgcccgg cacgctacgg      3660
     gcgaaacacg aacaaacctt gggtgacgca ccgaccgacc gaccaaccgc gcgagttcga      3720
     aaaattcggc aaatgcgcga acaatttgaa atcgccaccc gccgacaaga agaagccacg      3780
     gccaagcaag cacgatatta taatctgcgg aggcgcaact ggaggccgga catcggacag      3840
     cacgtctacc gccgagaaca cccgctgtcg aacgcccagg aacattttgc gggcaaatta      3900
     gcgcctcgct actcgggacc gtataccgtc gacaaacaca tctctccggt catcgtccgc      3960
     ctgcgggatc agcatgacaa gatcatcggc accgcacatg ttaaggacct gaaagacgcc      4020
     gaaacaccgc gtgaccggga ggatatataa gacgacgagt cgcggagcag aggaaaacag      4080
     tcagcatggg gaaatgcagg agcaccctcc gagagcgcct cgcacgcgcc gtcgcaagac      4140
     caccacgcat cccagtgagt aagcggccgt tcgaggcaac ggcccgcccg tcgcagccga      4200
     aacagccgaa cggccagacg accgaccagc catccgccac cggccaggga acacccgctc      4260
     cgacgccgcg aacagcccga cggccgccaa ccatccgcca acggaccgtc cgctcacggc      4320
     aggagcggct gtacgacccg gctccggaca acgtggccgc cgctcgccaa gccacgctac      4380
     tggcgacctt cggctccacg ctctcagacc tcgacgacga cgacgacgac aacggaggca      4440
     acaaggtgac cgcggaacac gtgacgcccg caccggcacc catgccggac atcgcgtccc      4500
     tgaccatcac ggagcccagc gcggtcccgc cggaggacac cccgtcagca ccaccgccac      4560
     catcggtgct gccgacgccg ccgccaacgc cacggcccac accaccgcct acaccgctgc      4620
     cagtgacgcc catgccgccg ccgacgcagc cagcgctcct gctgatgacg ccggcaccgc      4680
     catcaacacc acccgctccg ctaccggctc cggggtattt taccggaccc ccgccgccgg      4740
     agagtacccc agcagcacca ccgccgcccg gaccgccggc cccgccagcc gtcgccatac      4800
     ccgatgggtc cttccctgag gacgccctcc gcaccgtgcc gtgggaccgc atccgcccag      4860
     gacaaaggta ccgtcaccac gtgcgcgggc aaaagattgt catccggcgc cgccgcgacg      4920
     gttcatggct gttaaaataa agactttgta ttgtatataa ggacagggtc tgccgagggg      4980
     gagg                                                                   4984
//
ID   Gypsy-11_MoPha-LTR repbase;    DNA;    INV; 917 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-917
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1175-1175 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 917 BP; 197 A; 340 C; 230 G; 150 T; 0 other;
     tgtaacgagc cgttcctcca ctaccgcttg aacggaggta aggccgttac ccctacctcg        60
     ctcgctccct ccgctcttct ctacttccct caccaccgag tggagggtat ataagccctc       120
     cactcgcgac agaagtcaga gcttccccgg cctgcgaagt gagcagaccg ttcctcctgg       180
     tgtactgagc caggcatcct cgagcgcata ttgagcgccg tctcctaacc tagcgatcct       240
     acccgggcac gcagtgagtg ccttcccggc cacgtgttga ggggccgcac accgccacgc       300
     tccgcacccg agctctcggc cgcgcactga gcggtcgcgc gtcgctccgt cccggggact       360
     ccgtgctgag gagaaaccgg tgccgcgatt gccaccacgc ggggtgacaa cagcagcgcg       420
     atcgaacagc tgatgcgccg atcagctgag accgggtaac gaaccgcgcc gccaaccgca       480
     ccgcttactc accgctgcgc cgccagccag gctggccacc gcacaccgcc gcgccgctag       540
     cgccgggcct taaggccaca tcaccgcacc gcacgtcgcg ccgccgcgac caaccacagc       600
     gccgcgattc gccgccatcg ccgactatac gccgaccgat cggcacgcac accgcacggc       660
     caatcagggc accgcgccac accagcgtcc gccgcgacac tgtcgccagt accacacaca       720
     cacgaatcgc ctcgcacgac gagagtactt ccttgtaaat agtagcataa gatattgtat       780
     atagtagaat aaggaattat taaataaata taacgttata ccgaacacac cgttttctca       840
     ctcattcgag cccgccgccc ggaccctgaa tcccgcggct atccgtagcc aataggcata       900
     caagattcac ggttaca                                                      917
//
ID   Gypsy-11_MSe-I repbase;    DNA;    INV; 4646 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4646
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 888-888 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..4306
FT                 /product="Gypsy-11_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNTRSRKGSEGSSEETPYQADTLHLTEKLITKFSGQD
FT                 DAHPVSMWIRDIEDHREIFDWNPTQTLLVARRSLTGTAALWLRAEKTYKTW
FT                 DELKGAISKEFTDTLDIKKIHEIMSSRRKKKDESCFDYMLIMKELGKRGKM
FT                 PDYVAIKYILQGIPDLEINKIMLYGVTTYAELKEKLKLYETFKKNSAKDNI
FT                 RNNTFTSHSQNNPRRNTAATDLRCFSCGEKNHVSENCPHKLQGRKCFRCNE
FT                 FGHIASDENCPTKKMAVSKTNYKKSSHISSGDNRQTSEQIGRRESTQVGTT
FT                 ERRAPANQISKQAFFNLLQDGENNPSDVQGEVYVATTDVKRCACTSSNCSC
FT                 YEIANMTTRDGAVIGCNDKMADKCNNSDVCNVNKQNSESRCRVKPIKTVYL
FT                 CSETANALIDSGCDVNLMSVDLYRKIKTIQCDTNSNITLVGLGYSKVNTYG
FT                 CVTLDIIIDNCNYESVRFYIMPNDSVPFHIVLGNDFLQNITLVMKDGNVWL
FT                 FPKNDRMNPSCEWLQNMSCFLTFPDCVNHALDPKIKEEVSKLVQSYVPQQI
FT                 KEVPIELKIVLKDDLPVSQRARRLSFKEQEYVDCQVQDWLEDGIIRVSYSE
FT                 YASPLVLVKKKDGDLRVCVDYRKINSKIVKDEYPLPLIDNHIDKLATANIF
FT                 SALDLKNGYFHLRVHEDSVKYTAFVTMNGQYEFLRAPFGLATCPKVFTRFI
FT                 TIIFGELIVRGVVIVFIDDILIPAEDEYQALERLKEVLKVASEYGLCINWK
FT                 KSQLLTRRVEYLGHVIENGIVMPSPGKTDAVTKFPEPCSLKQLHSFLGLCS
FT                 YFRKFIPKYALIAKPLTDLLKKNSQFKFTDEHRAVFHELKMKLASRPVLKI
FT                 YNQYDETELHTDASSVAYSAILMQKGEDGAMHPVHYMSRRTTDAQAKYTSY
FT                 ELEALAIVEGVKKFRHYVYGKHFKIVTDCKAFQMTLNKKDLALSTRVARWI
FT                 LLLQDYDFTVEHRQGTEMRHADALSRNPYVGTITSNLHKDMQHAQDGDEGL
FT                 NAIKKILEDGGSYKDYYLNQGLLYKGPEHQLVVPSAMETEIIKRAHNNGHF
FT                 AKKKTLDLISKDYYIDKVGRKVEDFVASCIPCLLSNRKEGKKEGYLNPIDK
FT                 GDTPLHTLHLDHVGPLTETNKQYNHILTIIDAFTKFVWLFPCKSTTTKEVL
FT                 IKLEVLQQTFGNPERVITDRGTAFTSNDFQQYCIREGIECCHITTGVPRGN
FT                 GQVERIHRTVIQVLTKLCIETPGQWYKHVGRVQMALNSTYQRSVNTTPFEM
FT                 LIGKKMRRQEDLEIYELLQQEERDAYMQNRDELRKRAKQQILEVQQENKKG
FT                 YDKNNKNCRKYKEGDIVAIKRTQFGPGMKIKPKYLGPYRITKVKRFDRYDV
FT                 EKVDQSTEGPNKTSTAADLMKQWPDNINQK"
XX
SQ   Sequence 4646 BP; 1642 A; 707 C; 1030 G; 1267 T; 0 other;
     aaattggggg ctcggccggg atcggggaaa taaagtgcca tcaaagtgcg cgtacaaaaa        60
     gaacgtggtt cggccatttg ttgctacttg agtttgcatt tggaaattag aagacgaacg       120
     agaaattatg aataccagaa gccggaaggg cagcgaaggc agttcggaag aaacgccgta       180
     ccaagccgac acactacatc tcacggaaaa acttataaca aagtttagcg ggcaagatga       240
     cgcgcacccg gtgtcaatgt ggatacggga tattgaagac catagggaaa tatttgattg       300
     gaatcctaca caaacgctct tggtggcacg tcgctcacta accggcacag cggcactatg       360
     gcttcgcgct gaaaaaacct ataagacatg ggacgaatta aaaggtgcta taagtaaaga       420
     gtttaccgac acattagata tcaagaagat acatgaaata atgagctcaa gacgtaaaaa       480
     gaaagatgaa tcatgttttg attatatgct tattatgaag gaattgggaa agcgagggaa       540
     aatgccggat tatgtggcca tcaaatatat actacaaggt attccagact tagaaattaa       600
     taaaattatg ctctatggag ttacaacata cgctgaacta aaggagaagc taaagttata       660
     cgaaacattt aagaaaaatt cagctaaaga taatataaga aataatacgt ttacaagtca       720
     ttcacaaaat aatcctagaa gaaatacggc ggctacagat ttgagatgtt ttagctgtgg       780
     agagaaaaat catgtgtctg aaaattgtcc tcataaattg caaggcagga aatgtttccg       840
     atgtaatgag ttcggtcata tcgcttcaga tgaaaattgt cctacaaaaa agatggcggt       900
     ttcgaaaacg aattacaaaa aatcgtcgca tataagttcg ggtgacaatc ggcaaacttc       960
     ggagcaaatc ggacgacgtg aatctactca ggttggcact actgaacgac gagcaccggc      1020
     caatcaaatc tctaagcaag cattcttcaa cctattgcaa gacggcgaaa acaatccgag      1080
     cgatgttcaa ggcgaagtct acgtagctac gaccgacgtg aagcgatgcg catgcactag      1140
     ttcgaattgt tcgtgttacg agattgccaa catgacaacg cgagacggcg ctgtgattgg      1200
     ctgtaatgac aagatggcag ataagtgcaa taacagtgac gtttgcaatg taaacaaaca      1260
     aaatagtgaa tcaaggtgcc gggtaaaacc tattaaaaca gtgtatttgt gtagtgaaac      1320
     ggcgaacgct ttaatagatt cgggttgcga cgtaaattta atgtctgtag atctgtatag      1380
     gaaaattaaa accatacaat gtgatacgaa ttcaaatata accttagttg gtttgggtta      1440
     ttcaaaagtt aatacgtacg gctgtgtaac tttagatatt atcatagata attgtaatta      1500
     tgaaagtgta aggttctata taatgcctaa cgattctgta ccatttcata tagttcttgg      1560
     caatgacttt ttacaaaata ttacattggt tatgaaagat ggtaatgttt ggttgtttcc      1620
     gaaaaatgac cgaatgaatc ctagttgtga atggttgcaa aatatgtcgt gttttcttac      1680
     tttccccgat tgtgtgaatc atgccttaga tccaaaaatc aaagaagaag tttccaagtt      1740
     agtccagagt tatgtacccc agcaaattaa agaagtccca attgaattga agatagtatt      1800
     gaaagatgac ctgccagtat ctcagcgagc aagacgctta tcttttaagg aacaggagta      1860
     tgtggattgt caggtacagg attggctcga ggatggaata ataagggtaa gttattctga      1920
     atatgcaagc ccattagttt tagttaaaaa gaaagatggt gatttaagag tatgtgtgga      1980
     ttaccggaag attaattcta aaattgtaaa agatgaatat ccactcccgc taatagacaa      2040
     ccatattgac aagttagcta cggcaaatat tttcagtgca ttggatttaa aaaatggtta      2100
     ctttcacctg cgtgtccatg aagattctgt taagtatact gcttttgtga ccatgaatgg      2160
     acaatatgaa tttctacgtg ccccttttgg actagcaacc tgtcctaaag ttttcacaag      2220
     atttataaca atcatatttg gcgagttgat tgttagaggt gttgttattg tgtttattga      2280
     tgacattctt attccagcag aggatgagta ccaagcctta gaacgcttga aggaggtcct      2340
     gaaggtagcg tcggaatatg gattatgcat caattggaag aagtctcagt tattaacaag      2400
     aagagtagaa tatcttggtc atgttattga gaatggtatt gtgatgccat ccccagggaa      2460
     gacggatgct gttacaaaat ttcctgagcc atgcagttta aagcagctac atagtttcct      2520
     aggtttgtgc tcatacttta gaaagtttat acctaaatat gcacttatag ccaagcctct      2580
     cacggattta ttaaaaaaga atagccagtt taaatttact gatgagcata gagctgtttt      2640
     tcatgagtta aaaatgaagt tagcttccag acctgtgttg aaaatttata atcaatatga      2700
     tgaaacagaa ttgcatacag atgcatcaag tgtggcctat tcagcaattt taatgcaaaa      2760
     gggtgaagat ggagcgatgc acccagttca ttacatgagc cggaggacaa cagatgcaca      2820
     agctaaatat acaagctatg agcttgaggc actagcaata gttgaagggg taaaaaaatt      2880
     taggcactat gtgtatggga aacatttcaa aatagttacc gactgtaaag cattccaaat      2940
     gactcttaat aaaaaagact tggctttatc tactagagtt gctcggtgga ttttactttt      3000
     gcaagattat gattttactg tagaacaccg tcaaggtact gaaatgagac atgctgatgc      3060
     gcttagtcga aacccatatg taggaacaat aacttctaac ttgcataagg atatgcagca      3120
     tgcacaggat ggtgatgaag gtcttaatgc aataaagaaa attctagaag atggagggtc      3180
     gtacaaggat tattacttaa atcagggatt actttataaa gggccagaac accaattggt      3240
     tgtgccaagt gctatggaga ctgagattat taaaagagct cataacaatg gtcattttgc      3300
     caagaagaaa acattagatt tgataagcaa agattattat attgataaag taggaagaaa      3360
     agttgaagat tttgttgcat catgcatacc ctgtttatta tcaaatagaa aggaaggcaa      3420
     aaaggaaggt taccttaatc ccattgataa gggtgatacc ccattgcata ccctacattt      3480
     agatcatgtt ggaccactga cggagactaa taaacagtac aaccacattc ttactataat      3540
     tgatgcgttt accaaatttg tttggttatt tccgtgtaaa agtacaacta caaaagaggt      3600
     tttgattaaa ttagaagtat tgcagcaaac gtttggaaac cctgaacggg ttatcacaga      3660
     tcgaggtact gcatttacca gtaatgattt ccagcaatac tgtattaggg agggtataga      3720
     gtgctgtcat attactacag gagttccaag agggaatggg caagttgaga ggatccacag      3780
     aactgttata caagtactta ccaaactttg catagaaaca ccagggcagt ggtataaaca      3840
     tgtaggaaga gtgcagatgg cattaaatag tacttaccag agaagtgtca acacaacacc      3900
     atttgaaatg ctaataggaa agaaaatgag gagacaagag gatttagaaa tatatgaatt      3960
     gttacaacaa gaagagcggg atgcctatat gcaaaatagg gatgaactta ggaaaagagc      4020
     taaacaacaa atattggaag ttcaacaaga aaataagaag ggctatgata agaacaataa      4080
     aaattgtaga aaatataagg agggagacat tgtagcaata aagcgaaccc agtttggtcc      4140
     tggaatgaag ataaaaccta aatacttggg accgtaccgg atcaccaaag tcaaaagatt      4200
     tgataggtat gatgtagaga aagtggacca atccactgaa ggcccaaata agacatctac      4260
     agcggcagat cttatgaaac aatggccaga taatattaat caaaagtaga gttctctttg      4320
     taaggtaatt gtaattggta gaagttgata aatggagagg aatggtaagg aatggaaata      4380
     ggaaaaggga aagaattaaa agctagtaat gatagagtaa tcttttattg ccatattaca      4440
     ggttacagaa ttgtttacat tattggagca caatataata aaaaaaactg aaacaaaatg      4500
     tatgttaatt ttgttatgtg aagtgttagt tgtaagtttg ctacaaaaag aaaatgtgta      4560
     ttttgtgtgt gaatttacta tgtgtgtaat tgctgtgtgt gtttgttaag tgtgtctgag      4620
     ggcagacaga atgcaggatg accgag                                           4646
//
ID   Gypsy-11_MSe-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-244
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 937-937 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 244 BP; 86 A; 17 C; 68 G; 73 T; 0 other;
     tgtaggagtg taagaaaggt gttgagtgaa acggaatgta aaataagtgt gtgaaaggga        60
     cagatagtgt taagaaggtg agtaaaagag atagaatgaa agtaatgtta gacgacgacg       120
     tatgtagaaa aagagagagt aggattaagt cgttttttta ttataggacg gtgattgtga       180
     tttttttaaa aaagtaaagt aagtttacgg tatttttggt gtttgcactt cccgtgatcc       240
     caca                                                                    244
//
ID   Gypsy-11_OrIn-I repbase;    DNA;    INV; 5525 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5525
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1552-1552 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           374..1750
FT                 /product="Gypsy-11_OrIn-I_1p"
FT                 /note="PHD finger at the N terminus."
FT                 /translation="MDCPTCGRECQAEAGARCSVCKELFHFACDSLKTREN
FT                 YIKMAVAVREKWKCLACKDPSSELRKQVEALQEENRQIKGKLEEILRFLKG
FT                 QAAEVPVAPPIAVSTDEPRTKFTKIPHYLEELVKTVPKFKPEEPWAILGFL
FT                 AKLYEINQITRDPSTPAQFGEMFRRVAVTQGNTILIKLLSDSEGKPLTFQE
FT                 VNSGIMRQLVNVRTKTFFISRKVLRSQGYQEPFREYLYDLKKYAAILGDYS
FT                 EKEVLEMVLTGSNMSTRTKLLFSEKPKTLSELEALVGQVERLEVADSASWQ
FT                 GKRQNKSYPQGRYQKKPPPANNDSKGDARDSSSTDNAPYHENQQRETKKSN
FT                 NNWRNSHKNWNRNFKQPENPQRVPEKRLTPSLRRLPQPSSSHKTGHKCKKL
FT                 NPPNLPKPNLQKTIKERVFPWEENPGSHCNFPNKKFFKYLDFKNCFFRSCG
FT                 FRSVRLGFESSYCK"
FT   CDS           1557..4730
FT                 /product="Gypsy-11_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IHQTCQNPISKKRLRKGFFRGRKTLAHIATSQIKNFL
FT                 NISISKIAFFALVDSGASVSGLSQATVNNLSAVAPYLLSHVKPCDVRVTVG
FT                 DSGTFKCTKQIKLSLSIGKFSWKFNFLIIDTLPVDVVLGFDFMSYSRMTLS
FT                 PSQNVIFFDFDRSKIQFPLVSPLEPPHTNLSCMLPRKDLLKSFVAKYPDTL
FT                 TDRLGVTNVMTCNLRLKENASLKPKRTVFAQGPGKAKIMRQILDKLLEERI
FT                 VEKISTDFASPAFLVPKKAGGSIEADNFRLVVDYRRVNEQLEYSYFPIPTI
FT                 ESAFLHFKKAKFFSVIDLNSAYHQIPLSPQSKALTAFSTPFGCFQYNRMPF
FT                 GISLSGNIFSQLMETVFGDLNLDFLFFYLDDICVFSETWEDHITHLLIVFD
FT                 RLKAANLTVKPSKMQLGETKIKFLGHVIEQGKISIDQDRISALLEIPRPST
FT                 PKEVASFLASINFFSKFVPDFGIIAKPLNGLKKIDCPMIWTDECQQAWVTL
FT                 RQRITSPPVLKTPDFSERFAVFTDGAAIGVAACLAQAENGVYRPVAFASRK
FT                 LKDAESRYSAYELEALAVVFAFDKFQIYLEFEEFDLYTDHKALTSVVSLQH
FT                 KAGRYARLAARISRFRFKPHHINGKQNSIADYLSRHPCEQKSVPDAEAQMF
FT                 VLQRYPEVFEDFAVSQREDDTLRDIITTLENGGSVTNYSLVGSKLYFRTAQ
FT                 DGPKAVVPQHLRSMIFRYYHSEFFGAHMGITRTYQKIYQSFYFPGMRGFVA
FT                 NRVRRCLACQRSKSEASLPKGKLSSFTPTKPNENLFVDLAGPLPMSNSYKF
FT                 ILIAVDAFSNFVFLFPIRNATTKTIISCLKERIFNYFGYWRSVTTDNHSIF
FT                 KAKALQDFLFAHGVKKTFQIPYYPNPSRAERGLRNLKPALIAYFGENQTKW
FT                 SENLSFFQLALNTAVNSSSGFTPAELFLGRKLETPINLIWDIPADNGPRDC
FT                 KEMWSEALQNINRAKERYGRVYNKKHKNAVLTIGDKVLVKTHILSDKEKRI
FT                 SAKLAYKYSEPYKVTSVLSDVSYEVQCLKDPSKVARVHISQTKKVQDDVGD
FT                 G"
XX
SQ   Sequence 5525 BP; 1654 A; 1256 C; 1172 G; 1443 T; 0 other;
     tttggtagca gagcttaaag aaataactgc gctactttgt gagcgttact taacttttaa        60
     tagtgactaa cagttcgttt tttttttgtt ttatattttt acctttattt ttgtacatac       120
     gctaacggta tcgggaacca ttattatttt ttttttgtgg tgagaaccaa gctgaggaag       180
     atagattatt aaaaagttta attttttttt tcaaatatcg gccgaggtaa atttttatca       240
     gcgattagga aaggatttat attccaagtt gcacgttatc tcttttctcg ccgaccaagg       300
     tcaaatttcc cgtctttcgt cttttatttt atcgtacata attttttttt tttttctctc       360
     cgcatcttcc ctgatggact gccctacgtg cggccgggaa tgccaggcgg aggcgggagc       420
     tcgttgctcg gtgtgcaagg agctgtttca tttcgcctgc gatagcctga agactaggga       480
     aaattatata aaaatggcgg tcgcggttag ggaaaagtgg aagtgtctag cctgcaagga       540
     tccgtcaagt gaattgcgga agcaggtgga ggctcttcaa gaggagaacc gacaaatcaa       600
     ggggaaactt gaggagatct taaggttctt gaaaggtcaa gccgccgaag ttccagtggc       660
     accgccgata gcagtctcga ctgatgaacc caggacgaaa ttcaccaaaa taccccatta       720
     tctggaggaa ttggtgaaaa ccgttcctaa gtttaagccc gaagagccat gggcgatctt       780
     aggtttctta gcgaagcttt acgaaataaa ccaaatcaca agggacccat ccaccccagc       840
     acaattcggc gaaatgttta ggcgagtggc cgtgacccag ggaaatacga tccttattaa       900
     attgcttagc gactccgagg gaaagccttt aacgttccag gaagtaaact ccggaattat       960
     gaggcaattg gtaaatgtcc gaacgaaaac cttttttata tcgagaaagg tcttaaggtc      1020
     ccaagggtac caggaaccat ttcgagagta tttgtatgac ctcaagaaat acgccgcgat      1080
     cctgggggat tactcggaga aggaggtact cgagatggta ctgacaggct cgaacatgag      1140
     taccagaacc aaactactgt tctcggaaaa gccgaaaacg ttgtcggagt tggaagcatt      1200
     ggtcggccaa gtcgaacgac ttgaggtcgc tgatagcgcg tcctggcaag gaaaaaggca      1260
     aaacaagtct tatccacaag gaagatacca aaaaaaaccc ccccctgcca ataatgactc      1320
     aaaaggcgac gccagagact cgtcatcgac tgataacgcg ccgtaccacg aaaaccaaca      1380
     acgcgaaaca aaaaaatcca ataataattg gagaaattcg cacaaaaatt ggaatagaaa      1440
     ctttaagcag cccgaaaatc cccagagggt tccggaaaaa agattaacgc catctttgcg      1500
     gagactaccc caaccatcaa gcagccacaa aacggggcac aaatgcaaaa aactgaatcc      1560
     accaaacctg ccaaaaccca atctccaaaa aacgattaag gaaagggttt ttccgtggga      1620
     ggaaaaccct ggctcacatt gcaacttccc aaataaaaaa ttttttaaat atctcgattt      1680
     caaaaattgc ttttttcgct cttgtggatt caggagcgtc cgtctcgggt ttgagtcaag      1740
     ctactgtaaa taatttgagc gccgtcgccc cctatttact ctcacacgtt aaaccttgcg      1800
     acgtgcgagt cacagttggt gattccggca cttttaaatg tacaaagcaa atcaagttga      1860
     gcctgtccat cggaaaattc tcgtggaaat ttaacttttt aattatcgac acactccccg      1920
     tcgacgtcgt tttaggtttc gatttcatgt cgtattctcg aatgaccctc agtccctctc      1980
     aaaatgtcat ttttttcgat ttcgacagat caaagataca gttccccctc gtatcccctt      2040
     tggaaccacc acataccaat ttatcatgta tgttgccaag aaaggatcta ctaaaatctt      2100
     tcgtcgctaa atatccagat accttgacgg atcgccttgg ggttacgaac gtcatgacgt      2160
     gcaacctccg tttaaaggaa aatgccagtt tgaagccgaa gaggacggtt tttgcccagg      2220
     gcccgggtaa agccaaaatc atgaggcaga tcctggataa gcttttggag gagcgcatcg      2280
     tcgaaaaaat ctctaccgac tttgcatcac cagccttttt agtacccaag aaagccgggg      2340
     gaagtattga agctgataat tttcgtctgg tcgtagatta ccgccgagta aatgaacaat      2400
     tggaatattc atattttcct attccgacga tcgagtccgc ctttcttcat ttcaaaaaag      2460
     caaaattttt ctcagtaatc gatttaaatt cggcttatca tcagatcccg ctctcacccc      2520
     agtcgaaagc attaacagct ttttcgacac cattcgggtg cttccagtat aaccgtatgc      2580
     ctttcggcat ctctctctct ggaaatatat tttcccaatt gatggaaacg gttttcggag      2640
     acctgaattt ggatttttta tttttttact tagacgatat ctgcgttttc agtgaaacgt      2700
     gggaggacca cattacgcat cttttaatcg ttttcgaccg cctgaaagct gccaatctaa      2760
     cggtaaaacc gtcaaagatg caactgggcg aaaccaaaat aaagttttta ggccacgtta      2820
     tagaacaggg gaaaatctcg atcgatcagg accgaatttc ggccctttta gagattcctc      2880
     gaccatcgac cccgaaagag gttgcgtctt ttttggccag cataaatttt ttctcaaagt      2940
     ttgtccccga ttttggcatt atagccaaac cattaaacgg gttaaagaaa attgattgtc      3000
     caatgatttg gacagacgaa tgtcagcagg cgtgggtaac ccttcgccaa cgaattacgt      3060
     ccccgccggt attgaaaaca ccggactttt ccgaacggtt tgcggtgttc accgacggtg      3120
     ctgccatcgg cgtagccgcc tgtttggccc aggctgaaaa cggagtctac cgacccgtcg      3180
     ccttcgcctc caggaagctc aaggacgccg aatcacggta cagcgcttat gaactggaag      3240
     cactggccgt cgtattcgct ttcgataagt tccaaatcta cctcgagttt gaggagttcg      3300
     acctgtacac agatcataag gccctaacgt cggtcgtatc acttcagcat aaggctggac      3360
     gatacgctcg acttgccgcc aggatctccc gttttaggtt caaaccacac catatcaacg      3420
     gaaaacaaaa ttctatcgcc gattatttgt ctcgccaccc atgcgaacag aaaagcgttc      3480
     cggacgcgga agctcaaatg ttcgtgttac agcgttatcc cgaagtcttt gaagatttcg      3540
     ccgtctctca gcgcgaggac gacacgctta gggacattat aacgacattg gaaaacggcg      3600
     ggtccgtaac caattactcg ttagtcggta gtaagttgta ttttcgaacg gcccaggacg      3660
     ggcccaaagc tgtggttccg cagcacttga gaagcatgat atttcggtat taccattcgg      3720
     aatttttcgg agcacacatg ggaattacta gaacttacca gaaaatttac caatcttttt      3780
     attttcccgg tatgcgaggg tttgtggcaa accgcgtcag acgctgcctg gcgtgccaac      3840
     gctcgaagtc cgaagcgtcg ctaccgaaag gaaaactatc aagtttcacg ccgaccaagc      3900
     cgaacgaaaa tttattcgtc gaccttgccg gcccgttgcc gatgagcaac tcgtacaaat      3960
     ttatattaat cgcagtggac gcattctcca atttcgtatt tctgttcccc attaggaatg      4020
     ccacgacgaa aacaataatt tcatgtttaa aagaaagaat ttttaattat tttggttact      4080
     ggaggtcagt aacgacggat aatcactcga ttttcaaggc gaaggctcta caggatttcc      4140
     ttttcgccca tggagtgaaa aaaaccttcc agatcccgta ttatccaaac ccaagtcgcg      4200
     ccgaaagagg cctaaggaac ctaaaacctg ctttgatcgc atatttcggc gaaaaccaga      4260
     ctaaatggtc ggaaaacctg tcttttttcc agcttgcctt aaacacggca gtaaactcct      4320
     caagcggctt cacgccagcg gaactcttct tgggtaggaa attagagact cctataaatc      4380
     tcatatggga catcccggcg gacaatggcc ccagagactg caaggaaatg tggtctgagg      4440
     cacttcaaaa tattaataga gcgaaagaga gatatggaag ggtttataac aaaaaacata      4500
     aaaatgccgt tctcacgatc ggggataagg tgcttgtgaa gacgcacatc ttatcagata      4560
     aggaaaagag aatttccgct aaactcgctt acaagtattc cgaaccctat aaagtgacgt      4620
     cggtcttgtc ggacgtttca tacgaggttc agtgcctaaa agaccctagc aaggtcgctc      4680
     gggtccacat ctcccaaaca aaaaaggtgc aggacgatgt gggtgatggt taaggtactc      4740
     tctgtgtgtg tcaagtttcc ctttaccttt cccctaaccc atccctaaag aaaggtcttt      4800
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4860
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaga agaaaaaaaa aacccccaca gggatagaag      4920
     aagaaaacga aggcgatttt aatttttttt tccgtttaat ttttttttcc atttccatat      4980
     attttttttt tctcgtacat ggatcgcaga cgctccgtcc actctcaaaa aaatcaaaaa      5040
     atgatcaaat ggtaaggaaa ataatttaga gaaagtagaa aaataattaa aagaagcttt      5100
     tattttgtta atagacgttt gacaaatgct aataggatta acttcttatc agtctttctt      5160
     tacaacacgt tcactttcgt tttagttttg tgaccttgac attgtcacct ttcacggtca      5220
     tttaaaatac cacctgtttt tcaatgagaa aaaatgtaaa tttgaattag gtacctaatg      5280
     gcaaccagca tcgccactga ccgctatcat ccgtagttct gagcctggac ggctgccttt      5340
     caagtctcga agccggcgga acttttttat accgctatca tcctacgcca cgcccctcca      5400
     agagtgacgc tcaacagcgg aggaagacac cggccatccc caggcgccat gagtgacgct      5460
     ctacagcgga gacgaacgtt tcgggtctcc gggcgccttt gccgcccctt tgaagccggg      5520
     ggtgg                                                                  5525
//
ID   Gypsy-11_OrIn-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-352
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1518-1518 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 352 BP; 91 A; 90 C; 80 G; 91 T; 0 other;
     tgtcacggac acgggccgag accgctggaa gggtggggag ggctcgagct ctccgggaac        60
     acgggacgac gccagagtgg actgggacgc cgttcgacga agagaatcca acgaatgctc       120
     aaagccatct tttcattttc tacccttacg aagaaacccc cctcacaggt acctcgtgtt       180
     gccaaaaaat aacaagaaag accttttcat tttttccttt ccttaccacc gtatttcaat       240
     aaagaatgtt ttttaaaaaa agggtttatg gttttttatg ttgccccctt tcctcccccc       300
     tttcgcccct tagaaggatc tctaggggtc gaaaaatgta acgtgggtta ca               352
//
ID   Gypsy-11_OsLi-I repbase;    DNA;    INV; 5241 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-5241
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2033-2033 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..1157
FT                 /product="Gypsy-11_OsLi-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MQFREQQRDFNARWEKERSRAEEKQQEERTASSAIQK
FT                 ALEERMAAMESSYQVLSSNFQLFLEKFSATAVRDGDREALLVNPSTSAGLA
FT                 IPQPSPPVSQQGVSGVSRNVSDLGYVLKPPKFEGKTNWEEFKLQFEAIAGA
FT                 NRWDEPRKALALVASLEGPARSILTSLSVEKQTDFPALISALAFRYGTKNF
FT                 ENLNYVKFQNYKQRKGESISDLATEIERLAQAAFCECPLEIRDKLAASQFV
FT                 SSLANEEMKRMLRLGGFTSLRAAVIRALEIEAVESMANASDIKKETFSKPF
FT                 YSSERVSGRREMRRPAKRKLEKQEIECWNCKEKGHMWRNCPKKRKEEFSTK
FT                 KGNGKKSA"
FT   CDS           1043..4462
FT                 /product="Gypsy-11_OsLi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KTGDRMLELQGEGSYVAELPEKEKRRVFNEEGKREEV
FT                 GVEGHPPASPLSAPVVRRVAGNVLSCVEGFVAEKKCPIILDTGSSLNLLDV
FT                 KKFGSNNEFGAVGTEKLFDPQIFSISGEKLPIYGKQRSLVTIGTLSTEEDF
FT                 LLIDMAEQCILGTNFLNKHSCQLDFILGKLCIKHHGEVDFLRSNLIKKPLA
FT                 FGTRREEDSVPEYLQELYIRSGKDLNEEQRFTFRNLLLEFKDIFAKNSEEV
FT                 GKCSVVQHKIDTGTCSPIKQPPRRLPLHRRDEVEELLTKMERQGVIEKSKS
FT                 PWSSPIVLVKKKDGSTRFCVDYRRLNEVTKKDSYPLPRIEDTLDAVAGSTW
FT                 FTTLDLQSGYWQILVDDEDKEKTAFCVGTGLWQFKVMPFGLCNAPATFERL
FT                 MENVLQGLNWKICLVYLDDVIIFAKSFDQEIEHIKVVFSRLRDAKLLLSPK
FT                 KCNFFCREVRYLGHIVSEDGVKTDPEKISAVQNWPIPKNRTELRSFLGLCS
FT                 YYRKFVKGFSSIAKPLHRLTEDKVLFRWSEECQGAFEELKRHLVEAPILAY
FT                 PQHETDFILDTDASNDAIGAVLSQFQEGQEKVIAFFSKTLGKAERNYCVTR
FT                 RELLAIVKSIEHFHHYLYGRRFLIRTDHAFLRWLLSFKNPEGQTARWIERL
FT                 QEYDFEIKHREGKNHGNADSLSRRPCETAQCKPCTRLEEKEQKKGNHILRT
FT                 VCKPENFEEWIEDQQKDEDIGFIYERKREGHKPDWQEISALSSGAKFLWAL
FT                 WDSLEIHQDLLFRRWESVDGNEVDRLLIVPKSKVEEVLQECHNASSGGHFG
FT                 IRKTLAKVRRRFFWLNHRRDVEDWCRRCHRCTAKKGPSGKGRGLMKVYNVG
FT                 APFERIALDVVGPLPRSSSGNKYALVVVDYFTKWPEVVPLPNQQATTISTA
FT                 LMREVISRHGVPLELHSDQGRSFESTVFKELMKMLGIKKTRTTPLHPQSDG
FT                 LVERLIRTLMQYLSQFVAEHQKDWDEWIPTFLLAYRSSRHEITQNSPSMLL
FT                 MGRELRLPLDLLRGTIALDHKEETVYIEETRKKIEEIHKFVRHRMRICAEK
FT                 TKSWYDSFARPISFIPGDKVWFYNPRRTKGKCPKLQFDWEGPYEVMNRLNE
FT                 LIYRIFRSPKSKPKVVHVNRLAPYEHSRGSIT"
XX
SQ   Sequence 5241 BP; 1466 A; 1002 C; 1410 G; 1363 T; 0 other;
     ttggcgcagt cggtaggaca attagaaccc ggtcttcagc cggggatgag gtttctcccg        60
     aaactttgga gacacttttc gagggcctgc aaaggaacat ctccatgcag tttagggagc       120
     agcagcgcga ttttaatgct cgttgggaaa aggagcgctc tcgcgcagaa gagaaacagc       180
     aagaggaaag aacggcttct tcagcgattc agaaggcgtt ggaagaacgg atggcagcga       240
     tggaaagcag ttatcaggtt ttatcgtcca attttcaact atttttagaa aagttttcgg       300
     ccacggcagt ccgtgatggg gatcgcgagg cccttcttgt taatccttcc acttctgctg       360
     gtctcgcgat accccagcct tcacctccgg tctctcaaca gggagtgtct ggtgtgtcgc       420
     ggaacgtttc cgatttaggc tacgttctga aaccaccaaa gtttgaaggt aaaactaact       480
     gggaggagtt taaactccag tttgaggcga ttgcaggggc aaatcgttgg gatgagccaa       540
     ggaaggcctt ggccttggtt gcatcactcg agggaccggc gcggagtatt ttgacttctc       600
     tttccgttga aaaacagact gattttcccg cgttaatttc ggcccttgcg ttccgttatg       660
     gaacgaaaaa ttttgagaac cttaattatg tgaagttcca aaattataag caacggaaag       720
     gggaatctat ttccgatcta gccacggaga ttgagaggct ggcacaggcc gctttttgcg       780
     aatgcccttt agaaattaga gacaagcttg ccgcctcaca atttgtttcc tcactggcta       840
     atgaggaaat gaaacggatg ctgaggctcg ggggtttcac atctctcagg gctgctgtta       900
     tcagggctct ggagattgaa gcagtcgagt caatggctaa tgcatccgat ataaaaaaag       960
     aaacattttc taaaccgttt tattcttcgg agagggtttc cggaaggaga gaaatgagaa      1020
     gaccggcaaa acggaaactt gaaaaacagg agatagaatg ctggaattgc aaggagaagg      1080
     gtcatatgtg gcggaattgc ccgaaaaaga gaaaagaaga gttttcaacg aagaagggaa      1140
     acgggaagaa gtcggcgtag aggggcatcc tccggcttca cctttgtccg cccccgtcgt      1200
     acgaagagtt gccggaaatg ttttgtcctg cgtcgaggga ttcgtcgcag aaaagaagtg      1260
     ccccataata cttgacacgg gctcaagttt aaatctactg gatgtaaaga agtttggaag      1320
     taataacgaa tttggcgcgg tgggaacgga aaaactcttt gatccccaaa ttttctccat      1380
     ctctggggaa aaattaccga tttatggaaa gcagcgatcc ttggtaacaa tcgggactct      1440
     gagcaccgaa gaagatttcc tccttatcga tatggcagaa cagtgtattc tgggaacgaa      1500
     tttcctcaat aagcattctt gtcagctgga ctttatcttg ggaaagcttt gtataaaaca      1560
     ccatggtgaa gttgattttc taagaagtaa tttgataaaa aaaccgttgg catttggcac      1620
     aagaagggaa gaggattccg ttccggagta tcttcaagaa ttgtacatac gcagcggaaa      1680
     agatttgaat gaagagcaac ggtttacatt taggaatttg cttcttgaat ttaaagacat      1740
     ttttgccaaa aattcggaag aagtaggaaa atgtagtgta gtccagcata aaattgacac      1800
     gggaacttgt tcgccgatta aacaaccccc acgacgttta ccgttacacc gccgagatga      1860
     agttgaggaa cttcttacga aaatggaacg gcaaggggtg attgagaagt caaagagtcc      1920
     atggtcttcg ccaattgtcc tggtcaagaa gaaggacggg agtaccaggt tttgtgtgga      1980
     ttatcgtcgt ctcaacgagg ttacaaaaaa ggattcatat ccgttgccaa ggatcgagga      2040
     tactctggat gcggtggccg gttcaacgtg gttcacgacg ctggatttac aaagtggata      2100
     ttggcagatc ttagttgatg atgaagataa ggagaagacc gccttttgcg ttggcacagg      2160
     actatggcaa tttaaagtca tgcccttcgg actttgtaac gctccagcta ctttcgagcg      2220
     tttgatggaa aatgttttac aaggattgaa ctggaagatt tgtcttgttt atttggatga      2280
     cgtaatcatt tttgcgaaaa gtttcgatca agagattgag catataaaag ttgtattctc      2340
     ccgcttgcgc gacgccaaac ttctactgag cccgaagaaa tgtaatttct tttgccggga      2400
     ggtcaggtat ttggggcaca tagtctctga ggatggagtg aagacggatc cggagaagat      2460
     ttcagcggta cagaattggc cgatcccgaa gaacaggact gaactgcgaa gtttcctggg      2520
     tctctgctcc tactatagga aatttgtgaa gggtttctct tccattgcga aacctttaca      2580
     tcgtctgact gaagacaaag tgcttttccg ttggtcagaa gaatgccaag gtgcttttga      2640
     agaattgaag agacatcttg tggaagctcc aattctagcc tatccacaac atgaaacgga      2700
     tttcattctt gatacggatg cgtcaaatga tgcaattgga gcagtcctct ctcagttcca      2760
     ggaaggacaa gagaaggtta tagccttttt ctctaaaaca ttagggaagg ctgagaggaa      2820
     ttattgtgtg actagaagag agttgttggc tattgtaaaa tccatagaac attttcatca      2880
     ttatctttat ggacgaagat ttctgataag aactgatcac gctttcttga gatggctgct      2940
     ctctttcaag aatcccgaag ggcagactgc gaggtggatt gaacgtttgc aagagtatga      3000
     ttttgaaatt aagcatcgag agggaaagaa tcacggaaat gcagacagtc tttcgagaag      3060
     accctgtgaa actgcacaat gcaagccttg tactcgtctg gaggaaaagg aacagaaaaa      3120
     gggaaatcac atcctcagaa cggtttgtaa acctgagaat tttgaagaat ggatagaaga      3180
     tcaacagaaa gacgaggata ttggttttat ttacgaaaga aagagggaag gtcataaacc      3240
     ggattggcag gagatttccg ctctttcttc tggggcaaag tttctctggg cactttggga      3300
     ctctttggaa attcatcagg atttgttgtt tcgaagatgg gagtccgttg atggaaatga      3360
     agtggataga ctattgattg taccgaagag taaagtcgaa gaggttcttc aggaatgcca      3420
     caatgcgtcg tctggaggac atttcggaat acgtaagacc ctggccaagg ttcgacggcg      3480
     gtttttctgg cttaatcacc gaagagatgt ggaagattgg tgtcgacgat gtcatcgttg      3540
     tacggcgaag aaaggtcctt cggggaaggg aagaggactc atgaaggtct acaacgtagg      3600
     ggcacctttc gagaggatcg cgctcgacgt tgttggtccc ttaccaaggt cttcttctgg      3660
     aaacaagtac gcgctggttg tggtggatta tttcacgaag tggccagagg tggttccgct      3720
     tccgaaccag caagcgacga caatttccac ggccctgatg agggaggtga taagtcggca      3780
     tggagtaccg ttggagcttc attctgatca gggtcgcagt tttgagtcaa ctgtctttaa      3840
     agagttgatg aagatgttgg ggataaagaa aacgagaaca actcccttgc accctcagtc      3900
     agatggactc gtagaacggt tgatacggac cttgatgcag tatttatccc aatttgtggc      3960
     ggaacatcaa aaagattggg atgagtggat tccgacattt ttattggcct atcgttcttc      4020
     tcgacatgaa attactcaga atagtccttc aatgcttctg atggggcgtg agttacgttt      4080
     gcctttggat ctgctcagag gaactattgc cttggatcat aaagaagaaa ctgtttacat      4140
     cgaggaaacc agaaagaaga ttgaagagat tcacaaattc gttcgtcatc gtatgcgaat      4200
     ttgtgcggaa aagacaaaat cctggtatga ttcttttgcg agaccaattt cctttattcc      4260
     tggggacaag gtgtggtttt acaatccccg aagaacgaag ggaaaatgtc ccaaactcca      4320
     gtttgattgg gaaggaccct acgaagtaat gaaccggtta aatgaactaa tctatcgcat      4380
     atttcgctcc ccaaagtcca aacctaaggt ggttcacgtg aatcgtttgg ccccttatga      4440
     acattcacgg ggaagtatca cctaagaagg aaaggatcta gattagaaga ctgaggaggg      4500
     tgtttctgac gtcttcgtcc aagaagaagg cgcttcgtcg gacagagcca gggtgaggtt      4560
     tctttcagcc acggtaaact tgctggctac gcgtgtctaa acgatggagg cagtgttgtt      4620
     ctcctcggag gaggagggct tcccctcagc cggtgtcccg tttattttta atttttgtat      4680
     tcggggttct ggtcatcgga ctgcgtagtt gtggtatgct ccggaccacc agaccatcga      4740
     ggaaagattt tgcttgatgg ctggggagca tcccccggtg gagtggaccc gtcggactgg      4800
     gggtttcttc atccgagaag actttgagag gaaggcgtga aggccctgag aatcaagagg      4860
     aagggcgaag aacagtcagg acctcctcga agaaagaaga aatctaagaa gaattagaaa      4920
     atttgagcgc attctaagat gacctgtgca cactgaaccg gcgtcttgct cagggttttt      4980
     gagtggtttt cccctgggac gaaggacaaa tgtcaagacg ttagctgcct gttggggcca      5040
     cttaggtaaa tgttacgtct ttggttttta cctcctttca ggcagaggta ttagagaaga      5100
     ggttagcagc catgagagac tgacagcacg aggttagaga ccatagcttg aattggctcg      5160
     atgagcggct ttacatgaag atggtcacaa ggatgaagat ggtcgcggtc gggacgaccg      5220
     cttattgaag gaggggagca a                                                5241
//
ID   Gypsy-11_OsLi-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-323
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2030-2030 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 323 BP; 78 A; 79 C; 74 G; 92 T; 0 other;
     tgttgcgacg gtgagaagtt tccgctcttt cgatgcatcg actgcttctt gatgtatcga        60
     aagagccatc gactgctccg tccgaagctg tcaacgaatc acgatgtgaa gctattccaa       120
     gtttcgagcg gaaacacgtc accggatgct tgaggtctct tagacaaccg cgcggctttt       180
     gataatcaga atgtttcggg aacccgacct gtacggatct attgcttaag aactcctttg       240
     taatcgaaat atagacagtc tagtttgctt cgtctctatt tattttacga tggaaagtgc       300
     tagctccact ccccggcgca aca                                               323
//
ID   Gypsy-11_PBa-I repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-11_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-295
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 691-691 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~97% identical to the consensus.
XX
SQ   Sequence 295 BP; 92 A; 55 C; 87 G; 61 T; 0 other;
     atctcagaag tgggattcag cctatgttac ctcagagaag attcagccta tgttacctga        60
     caagtcgatc gttcaggagt gaacggaaaa agtcgggggt agtactccaa agtcgtgtcg       120
     gtcgttcaag agaaatgaac gggaaaaaag tcgcggagta gtactccaaa ggagtcgtgt       180
     cggtcgttca agaaagtgat cgaggtcggg agcagaagct ccaagtttcg gataaaagtc       240
     cgatagagga agactcggta cattcgggac gaatgtaata ccagaatggc cgaac            295
//
ID   Gypsy-11_PBa-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-11_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-174
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 692-692 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 174 BP; 52 A; 32 C; 45 G; 45 T; 0 other;
     tgtaagaatt agacgaccgt aagcggtcat gaaagagatt cggaatataa acagctaaca        60
     gagaggagcc gtcgtggtcg tgcagactaa gtgtcggatt ggtagacgag ggatcccgag       120
     ttcaaatcca gtcggtctcc gttaattttt tccgaatcta atagatatct ttca             174
//
ID   Gypsy-11_PPo-I repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-509
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2979-2979 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..507
FT                 /product="Gypsy-11_PPo-I_1p"
FT                 /translation="MSVGQIGEYDVRSGAWESYSRRLDTYFVSNGIRPEVR
FT                 LPTLIAVMGGEAYEWLEKLACPKKPMDLARQRGGAANTAGGAAGAESWRSR
FT                 AAGAGGASGATSKSIGAKYAPSWRGSAAGGNSCTERRGAVCRFRLFAC"
XX
SQ   Sequence 509 BP; 110 A; 108 C; 191 G; 100 T; 0 other;
     ttggcgacga gaataaagta cggggcggtt gttattgtgc ggtgcgcata atacgaactt        60
     gttcgatagt gaaatctgtg gaagttgcgg tttgttaaaa tgtcggtggg tcaaatcggc       120
     gagtacgacg tgcggagtgg cgcgtgggag tcctacagcc ggcggctgga cacgtacttt       180
     gtctccaacg gcatcaggcc ggaagtgcgt ttgccgacat taatcgcggt aatgggtgga       240
     gaagcctacg aatggttgga aaaattggct tgtcctaaga aaccgatgga cctggccagg       300
     caacgtggcg gtgcggccaa cacggccggc ggagcggccg gagcggagag ctggcgcagc       360
     agggcagctg gtgcaggggg agcaagtggt gcaacgagca agagtatcgg agcgaaatac       420
     gctccgagtt ggcgcggcag tgcggccggc ggcaacagct gtacagaaag gcggggcgcg       480
     gtatgtcgtt tccgtttgtt tgcgtgcag                                         509
//
ID   Gypsy-11_PPo-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-120
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2980-2980 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 120 BP; 35 A; 25 C; 20 G; 40 T; 0 other;
     tgtaatgtag gtaaccggaa ataaactgtc cgcgaattac cttattaatt atgcataatt        60
     attggtcagt cggattacac atctcgaacc ttacgcttgc gttttatttc gtacaccaca       120
//
ID   Gypsy-11_RP-I repbase;    DNA;    INV; 2015 BP.
XX
AC   ACPB02037242;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_RP_;
KW   Gypsy-11_RP-LTR; Gypsy-11_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2015
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02037242; Positions   30664   32678.
XX
CC   'ATAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..1660
FT                 /product="Gypsy-11_RP-I_1p"
FT                 /translation="MQLGNIKRIESAIMFAPVKEAKRFYEIIFGLDEGRLS
FT                 RKKLKEFEGFKLNDVDLCNKVEELKDTFSLWELKSVANLLGIQLSCRQDVA
FT                 SELCKFLNDISLLLEAISEEQPEEEENEYFEEVSGNSTSSKHVQQCRPYQF
FT                 SSRDIEESLRPFTGEDNYTINLWLTDFEELAQVMRWQELEKWVFAKKSLKG
FT                 LAKLFVSGERGLTSYSALKEALVEEFSSEDSVKESCFRFNKFVSDSKVETR
FT                 KCFNCYEEGHLVAECPKPRREKGSCFECGKMGHLQRECERRKQSTTSSVSL
FT                 VAETSALPPSTADILREGATTSGEVEALPGSVISLIVEDRVSEDDILREVA
FT                 INDGSEVMLIDYSVEEIVNPELTVNYVKPIEKPSEPAVDFEVEMKVIPEQN
FT                 LSMLQENDKGNCESSEYLKNKMLKRFEICNELVYRKKKGKILFVVPGKMEH
FT                 QNSRKFYDYVGHLGINKGAELILRSCRFSKLQDKIKDYIDSCVNCIAYIPI
FT                 LGKKEMWWTMFCSMLGTCLGDISGNSDSF"
XX
SQ   Sequence 2015 BP; 647 A; 235 C; 487 G; 646 T; 0 other;
     acttcaggtg tggggtaaag aactggtaaa gtgagttaaa gttcggttaa tttggttaag        60
     aatagtcaat ttgtgagaaa ccaaaatgca gcttggtaac attaagagga ttgaatccgc       120
     aattatgttt gctccggtaa aggaggcaaa aagattttat gaaattattt ttgggttaga       180
     tgaagggcgt ctaagcagaa aaaagttaaa ggaatttgaa ggtttcaagt tgaatgatgt       240
     ggacttatgt aataaagtgg aagaattgaa agacacattt tcattgtggg aattaaaaag       300
     tgtcgcaaac ctattaggta ttcagttaag ctgtagacag gatgtggcgt ctgagttgtg       360
     taagttcctt aatgatatta gcttattact tgaggcaata agtgaagaac aaccagaaga       420
     agaagaaaat gaatactttg aggaagtaag tggaaattct actagttcga aacatgttca       480
     gcaatgtcga ccatatcagt tttcctctag agatattgaa gaaagtctgc gaccgtttac       540
     aggagaggat aactacacca ttaacttgtg gttaactgat tttgaagaat tagcgcaagt       600
     gatgaggtgg caagagctgg aaaaatgggt ctttgcaaag aagtcactga agggactggc       660
     aaaacttttt gttagtggtg aacggggttt aaccagttat agtgcattga aggaagcact       720
     ggttgaggaa ttttctagcg aagacagtgt caaggaaagt tgtttccgat ttaataagtt       780
     tgtttcggat tcgaaagtag aaacaaggaa atgttttaat tgttatgagg aggggcattt       840
     agtggctgaa tgtccaaaac ccagacgtga gaagggaagc tgttttgagt gcggcaaaat       900
     gggacacctt caaagggaat gcgaacgtcg gaagcagagc acaacatctt cagtttcgct       960
     ggtggctgag acatctgctc tacctccatc tacagcagac atcctcagag aaggcgctac      1020
     tactagtgga gaagtagaag ccttgcccgg ttcagtaata tctttgatcg tggaagatcg      1080
     tgtaagtgaa gacgatatat tacgtgaggt agcaattaat gatggttcgg aggtaatgtt      1140
     aattgattac agtgtagaag aaattgtaaa ccctgagctt actgtaaatt atgtgaaacc      1200
     tatcgagaaa cctagtgaac ccgctgttga tttcgaagta gaaatgaaag tgattcctga      1260
     gcaaaatctg tcaatgctac aggaaaatga taagggaaat tgtgaaagta gtgaatattt      1320
     aaagaataaa atgcttaaaa gatttgaaat atgtaatgag ttggtgtata gaaagaaaaa      1380
     ggggaaaatt ttatttgtag ttcccggaaa aatggagcac caaaatagca gaaagtttta      1440
     tgattacgtt ggtcacttag gaattaataa aggtgccgag ttaattctaa ggtcctgtcg      1500
     attctcgaaa ttgcaggaca aaattaaaga ttatattgat agttgtgtta attgtattgc      1560
     atacattcca atcttaggta agaaagaaat gtggtggaca atgttttgtt ccatgctagg      1620
     tacctgttta ggggatatat caggtaactc agattccttt tgagggaatt tctgagtctg      1680
     gaattgggaa agtattagca attcctgtgt aaagttatag tagattttat ttataaattt      1740
     tgtttgtgtt aggtatgtta cgatattatt tgctttggtt atgttaatta tgattgtaat      1800
     agttttttta ggtttgtttt attaatcatt tttgtaatat tgttatgata gttttaggtt      1860
     gttttaatta tgatttattt agattaattc tgtttatgta ttagcttgtt ttatgttcag      1920
     ttatgtttat tcgtaggatt agttgaaact ttttattaaa ttgtaattta tcactcgtgt      1980
     gatcgagggc gatcacgggt caggattggc cgagt                                 2015
//
ID   Gypsy-11_RP-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   ACPB02037242;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_RP_;
KW   Gypsy-11_RP-I; Gypsy-11_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02037242; Positions   30345   30663.
XX
SQ   Sequence 319 BP; 83 A; 31 C; 71 G; 134 T; 0 other;
     tgtagtaaat ttagatgtat tggaatgtta gatatttggc aaccctgttg agggtgtaag        60
     agaagggctg accgttaggg gtagctagag gtagcaggta gttggagaca ttccttagtg       120
     gagtagagtt gagtttggtc actctttatg gaagttatgc cttatgaatg ttatgtctta       180
     tgaattatgt gaataaacta tatttaggtt aattagtgtt tattcaaccc ttatgaaatt       240
     agtaaattat tattatgttt tatgtgtctt agttatttgt gttttccccc attttgttat       300
     ttttatcttt tattttaca                                                    319
//
ID   Gypsy-11_SI-I repbase;    DNA;    INV; 8216 BP.
XX
AC   AEAQ01022239;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_SI_;
KW   Gypsy-11_SI-LTR; Gypsy-11_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-8216
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022239; Positions    8472     257.
XX
CC   Positions [4893-5372] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1800
FT                 /product="Gypsy-11_SI-I_1p"
FT                 /translation="METRGGAKPPVKKVLSEEELDAIRMAQVHEKRLREES
FT                 AALDKERDRLDREKREFERNKNAESTIAADMRGLLSALKNEMMHEINMLRQ
FT                 DVGNRRSPTRSPTPPAGQRMFSNTPSPTRHQGSPDRSGAPKISFREILEGV
FT                 PRFDGYNVPLTQFARACRRAREIAPANHEKHLTRLLVNKLSDRACAAVEDE
FT                 PCESVTQLIDLLNGAFGSPNSIAQYRGELSRAYMKPNEHILDFISRIKELR
FT                 STILDAERRTRGVLDAAIINDVDELTARSFCDGLPLRYRMLMRREHENSPF
FT                 EAFATTKAIAKRDELERERYDPNYRPDRRGGNRPFSGNGLTRDYRDSRPST
FT                 ERYREPTNYSATRDIREPRQDYRPLADRYRRPIEYRNSRESREHYDNRRVV
FT                 ADTMNQRTESAPRDANSIWCRYCKYPGHEIQNCRKRQYNENKQGNAPGPSS
FT                 RPDAARGGPPPNRPVRCVEIDLEEKNELVSSE"
FT   CDS           1752..5372
FT                 /product="Gypsy-11_SI-I_3p"
FT                 /translation="MCGNRSRGEERIGLLRIKNFNHAPTVRITSDIFQPDV
FT                 TLMVDTGAALNLIKINKILPNVQIDSNSIIFLTGITEGRVETLGCVSANVL
FT                 GREIKFHVIPSEFPVSCDGILGADFLRGAGKINFVEQTLEWHNASFPFLNR
FT                 EMTKFPARSSVVMCVNVTNAAVATGYVPRLTIDENIYLGEAIVSNREGKAY
FT                 LRAFNTSDKDIILPTPTVELQNFDLPGGSYPEQGTLVPALGKGNDSGNILA
FT                 IAGAGGSRKDEVKSLLRLEHLNKEELKHVDNIVEKHCDIFQLPNDKFECTN
FT                 VMKHKIKTTDEQPVHTKQYRFPSIHKEEIDKQVKTLLENDVIKPSVSPYNS
FT                 PLWIVPKKPDSKGNKRWRMVIDFRMLNEKTIGDAYPLPNITEILDQLGSAK
FT                 YFSIFDLASGFHQILIDEADAHKTAFSTPYGHFEFNRIPFGLKNAPATFQR
FT                 LMDLVLVGLQGTELFVYLDNIVIYSSSLREHAQKFEKLAARLRQANLRLQP
FT                 DKCEFLRKEVTYLGHVIGENGVKPDPEKIRAVKEFPKPTNPKQIKQFLGLA
FT                 GYYRRFIQNFSKIAHPLTNLLKQDSAFLWESPQENAFETLKESLCNYPVLQ
FT                 YPDFSKPFLVTTDASNVAIGGILSQGPLGKDLPVSFAGRRLNQAEQNYSTI
FT                 ERELLAIVYCVNYFRPYLYGQKFQLITDHKPLVWLHSVKDPTSRLVRWRLK
FT                 LAEYEYQVIYKAGKNNTNADALSRNPIPYKAFPISSDNFEESFFPSPSNNV
FT                 NETCYETNQMRDMTTKSPEQTETIKTAPVKVQVEAINDGMADTHTRATGIN
FT                 ETEYETDLADSDTNATFSETETDEPIVDPVDEEYQINRTRINETRDHFKDK
FT                 KDNLAIFVDETGRPCDTGSRHLAEASKLPEIRETNVGRAKILRQGKYYLIV
FT                 LAINTQGSKVTQRETIKMALVSLYDVVRELELRSVSISKGTVAAVPWDIIQ
FT                 GYIARFFYDTTVLISICSNQIITPEEQDRKKIMYKNHNTAIGRHKGVSKTY
FT                 DRIRYNYYWTNMKTDIQNFVKNCKDCQLKKLVRLKTRQPMTLTDTPGMAFE
FT                 KVSLDIMGPLPTSLNGHTYILTIQDLLTKYSLAIPLQQATSTHIADAFVNN
FT                 FICIFGAPKGMLTDRGTNFLSNLMRLIARRFKIKQYSTTAYRPQSNGSVER
FT                 SHQVLWDYLKQFVRGNDWDEYLSLATFSYNTSVHEATRYTPHELVFGR"
FT   CDS           5843..7834
FT                 /product="Gypsy-11_SI-I_2p"
FT                 /translation="MYASSIFTLLMIPVCVRGLIGYDCHGEGLNITTLSLL
FT                 DIGSCNLDDVEPINDEVYVQLMQLSDYNPVSTKQCRVEIDRIIYYCGMHSH
FT                 VSIVGNGRRQYIRELGADACRRLHETGVLAISTTTIDKLVINSTNLRSLTL
FT                 AGRVATDGRCHGAQYTDSYGTWDNVVVQATAKISLRTFEANIKQSTGEIIL
FT                 PSGTRCAVSNRVCFDADGSETYWEMTPSDSCHFDRYDILYEGMANRLSPAK
FT                 GQVTPVVYTVTSKDTTFALTKSAEVNVCGYKLFKTEHPKLLIFETQRGQTF
FT                 KSRSRVSVNDLDMFTYVNSKFVYVEKHIKLQLTRLYKDLMEQKCALERQVL
FT                 QNVLSLSSIAPDEMAFRMMKMPGYTAVISGEVIHLIKCVPAQCKIRHTESC
FT                 HNELPVTYRNESYFLLPRSRILTKKGTPRDCHGLLPTMYRIQDTWFRITTR
FT                 PEETIAPPTIQPLTQPSWKYVSPDSLAVSGIYTAEDLDRLRDHIMFPVEKP
FT                 STLNTIARGARGQDIPSGSISILNLLDEKSLDRIGENAGKRIWNGFMSFGS
FT                 FSAGVLAIFVIIRIIKLIIDTLIHGYALHSIYGWSIHLLGAIWSSVTNLLL
FT                 HMGNEKRVPTPVVNREYILIRPEPKDGKIIFSQEAPSTEQAEGQSGNPSTE
FT                 RSYAQLRKYLESESL"
XX
SQ   Sequence 8216 BP; 2513 A; 1936 C; 1867 G; 1900 T; 0 other;
     taaatatcgg cgctactcat aatccggaac ggtgcatact ttgtcgcatt ccccttacca        60
     ccactcaagt gattcgcgat tgtggaacat gccccacgga tctagggtat tttctggagt       120
     atctcgatca tgaaaactcg gccgcctacg aggatcccga gccgacaatc ctcgcaatat       180
     ccgaagaggg cgtttaaagg agaaaatttt tagcttcgaa taaacttcat ccctccccct       240
     tgctcctttc tgtacaatca atcgagcagt gtgaacgtgc cgtaaatctt tgcaccgcgc       300
     cgtaacataa aactggtgac agcagtggga tacgcattat tgttgtgcag atattaaaat       360
     tcattaaata tggaaacgcg cggcggtgct aaaccccctg taaagaaagt gctctccgaa       420
     gaagagctcg atgccatacg gatggcacag gtacacgaaa aacgtctccg tgaagaatct       480
     gctgctcttg ataaggagag agaccggcta gaccgcgaga aacgagagtt cgaacgcaat       540
     aaaaatgccg agagtactat cgccgcggac atgcgcggat tattatctgc tttaaagaac       600
     gagatgatgc atgaaattaa tatgttacgg caagatgtgg gaaatcgccg cagccccacg       660
     cggagcccta ccccacccgc cgggcagcgc atgtttagta ataccccctc cccaacgcgc       720
     catcagggtt cccctgaccg ctcgggcgca cccaaaatct ccttccgtga aatcctagag       780
     ggtgtccctc gcttcgacgg atacaatgtt cccctaacac aatttgctcg cgcttgtcga       840
     cgagcccggg aaatcgcacc cgccaaccac gaaaaacatt tgacgcgact tttagtgaat       900
     aaattatccg accgggcatg cgccgccgtc gaggacgagc cctgcgagtc ggttactcag       960
     ctcattgatt tgttgaacgg tgccttcggt tcaccaaata gtattgctca atatcgcggg      1020
     gaactaagca gagcatacat gaaacccaat gagcacatcc tagattttat atcgcgaatc      1080
     aaggagctcc gctcaacaat tttagatgcc gagcgtcgca cgcgaggcgt attagatgca      1140
     gcaataatta acgacgttga tgaattgacg gctagatcat tctgcgacgg tctcccgcta      1200
     cgataccgta tgctcatgcg gcgcgaacac gagaattcgc ctttcgaagc attcgctacc      1260
     accaaagcga tagccaagcg cgatgagctg gagagagaga gatacgaccc taactatcgg      1320
     ccggatagga gggggggaaa tcgacccttc tcaggtaatg gccttacgcg agattataga      1380
     gactctcggc ctagtaccga gcgttatcgg gagccaacta attattcagc cacacgcgac      1440
     atacgcgagc cacgtcagga ttaccgccct ctcgcagata ggtaccgcag gccgatcgag      1500
     tatcgaaact cacgcgaatc gcgcgaacac tatgataatc ggcgggtcgt ggcggataca      1560
     atgaatcaac gcacagaaag tgcaccccga gatgctaact cgatatggtg tcggtattgc      1620
     aagtacccgg ggcacgaaat ccagaattgc cgtaaaaggc aatataacga aaataaacag      1680
     ggaaacgcac ccggcccctc gagcagaccg gatgcggctc gaggcgggcc cccgccgaat      1740
     cgtccggtga gatgtgtgga aatagatctc gaggagaaga acgaattggt ctcctccgaa      1800
     taaaaaattt taatcacgcg cccactgtcc gcataaccag cgatatattc cagccagatg      1860
     tcaccttaat ggtcgacacg ggggctgcgc ttaacttgat taaaattaat aaaatactgc      1920
     ccaatgtcca aatcgattct aattctatta tctttctcac gggcatcact gagggacgcg      1980
     ttgagacctt agggtgcgtc agcgcgaatg tgcttggacg agaaatcaaa tttcatgtca      2040
     taccttcgga gttcccagtc tcgtgcgacg gcatcttagg agccgatttc ttacgaggcg      2100
     cggggaaaat aaattttgtt gagcaaacat tagagtggca taatgcctca ttcccgtttc      2160
     taaatcgaga gatgaccaaa ttccctgcac gctcaagtgt agtaatgtgt gtaaatgtaa      2220
     caaatgccgc cgtagcaact ggctacgtcc cgcgactaac aatcgatgaa aatatctacc      2280
     tcggtgaagc gatagtctca aaccgtgaag gcaaagccta ccttcgcgcc tttaatacat      2340
     cggataaaga tattattttg ccaactccta cagtagaact ccagaatttt gacctgcccg      2400
     gaggatctta tccggaacaa gggaccctcg tacccgcctt agggaagggt aacgactcag      2460
     gcaatatttt agcgattgcc ggagccggag gtagtcgaaa agacgaggta aaaagtttat      2520
     tgcgcctgga gcatttgaat aaagaagagt tgaagcacgt tgataatata gtcgagaaac      2580
     attgcgatat atttcaatta ccaaatgaca aatttgaatg tactaacgta atgaaacata      2640
     aaattaaaac tacagacgag caacctgtac ataccaagca atatcggttc ccctcgatcc      2700
     acaaagaaga aatcgataaa caggttaaaa ccttgttaga gaatgatgta ataaaaccat      2760
     ctgtttcacc gtacaattct cctttgtgga tcgtgccaaa gaagcccgac tcgaagggta      2820
     ataaacgctg gcggatggtc atcgatttca gaatgcttaa tgaaaaaacg attggcgatg      2880
     cgtacccttt accaaatata acagaaatcc ttgaccaact cggcagtgca aagtatttca      2940
     gtatatttga tctggcgtca ggtttccacc agatattaat agacgaagcc gacgcgcata      3000
     aaactgcatt ctccacgcca tatggccatt ttgaattcaa cagaataccc ttcgggttga      3060
     aaaatgctcc ggccacattc cagagactaa tggacttggt attggtcgga cttcaaggca      3120
     ccgaattatt tgtgtatcta gacaacatcg tcatatattc aagctcgttg cgggaacacg      3180
     cgcaaaaatt cgagaaacta gctgcgcgcc ttagacaagc gaatctgcgt ttacagccgg      3240
     ataaatgcga atttctccgt aaagaggtaa cgtacctggg tcacgtgata ggagaaaacg      3300
     gagttaagcc agatcccgag aaaatccgcg ccgttaagga attcccgaaa cccacgaatc      3360
     ccaagcaaat aaaacaattc ctagggctgg ctggttatta ccgccggttc atccaaaact      3420
     tctcaaaaat cgcgcacccg ctaacaaatc tcttaaaaca agactcggcg ttcttatggg      3480
     aatcaccaca agaaaatgca ttcgaaacat tgaaagaatc attatgtaat tacccggtgt      3540
     tacaataccc ggacttctct aagccgttcc ttgtaacaac tgacgcgtct aatgtagcga      3600
     taggcggtat attaagtcag ggccccctgg gaaaagactt gccggtgtcg tttgcaggta      3660
     ggcgattaaa ccaagccgaa caaaattatt cgacaattga gcgcgaacta ctagccatag      3720
     tatattgcgt aaactacttc cgaccgtact tgtatgggca aaaattccag cttatcaccg      3780
     accacaagcc gctcgtgtgg ctgcactctg tgaaggatcc tacttccaga cttgtccgat      3840
     ggcggttgaa acttgccgaa tacgaatacc aagtaatata caaagcagga aaaaataaca      3900
     cgaatgccga cgcactctcc cgaaacccga ttccctataa ggcctttcct atctcttcag      3960
     ataatttcga agaatccttt tttccgagcc ctagcaacaa tgtaaatgaa acatgttacg      4020
     agacaaacca gatgcgagac atgacgacca agagtcccga acagactgaa accataaaaa      4080
     cggcgccggt caaagtacaa gtggaagcca taaatgacgg aatggccgac acacacacac      4140
     gcgcgacagg tataaatgag acagaatacg aaactgacct tgcagacagc gatacgaacg      4200
     cgacgttctc cgagacggaa accgacgaac ctatcgtcga ccctgtcgac gaagaatatc      4260
     aaataaaccg cactaggatt aacgaaaccc gtgaccattt taaggataag aaagataacc      4320
     tagcgatatt tgtagacgag acaggccgac cctgcgatac tggatcgaga cacctggctg      4380
     aagctagcaa attacctgaa atcagggaaa ctaatgttgg aagggcaaaa attttacgac      4440
     aaggaaagta ctatttgata gttctggcaa tcaataccca aggttccaaa gtaactcaac      4500
     gggaaacaat aaaaatggcc ctcgtatccc tttatgatgt tgttcgagaa cttgagcttc      4560
     gatcggtttc catttccaaa ggaactgtgg cagctgtgcc gtgggacata attcaaggat      4620
     atattgcccg ttttttctac gataccacgg tacttatatc tatctgttcc aaccaaatca      4680
     ttacgccgga agagcaagac cgaaagaaaa taatgtacaa aaatcataac actgcgatag      4740
     ggagacacaa gggtgtctca aagacgtacg acagaatacg gtacaactat tattggacta      4800
     acatgaaaac tgacatacaa aactttgtaa aaaattgtaa agactgtcaa ttgaaaaaac      4860
     tggtgagact aaaaactaga caaccgatga cgctgacgga caccccaggt atggcatttg      4920
     aaaaggtttc cttggatata atgggtcctc tccccacttc ccttaatggt cacacctata      4980
     tccttacaat acaggatttg ctgaccaaat attcactggc aataccactg caacaagcca      5040
     cttccacgca tatcgccgat gcattcgtaa ataacttcat ttgtattttt ggtgctccga      5100
     aggggatgct caccgatcgg ggaaccaact ttttgagtaa tctgatgcga ttaatagcgc      5160
     gtagatttaa aattaaacaa tatagcacaa cggcatatcg cccgcaatcg aatgggtccg      5220
     tagagcgctc acatcaagtg ttgtgggatt acttaaaaca atttgtaaga ggaaacgatt      5280
     gggatgaata tttaagccta gccacatttt cctataatac aagcgtgcac gaagccaccc      5340
     gttatactcc gcacgagctg gtctttggta gatagcggaa attccggcgg cggacccgca      5400
     ggtagaaggt gtacggaacg aaacctatga aagctatctc actaaccttt tttgtaagat      5460
     ccgtgaaact caggaaatag cacgcaagaa tttaatcaga gctaagttac gatctaaaca      5520
     atattacgat aagaaaataa gacctgtaac ttttagcgta ggcgatatcg tttatatact      5580
     taaagaacca ataagaaaca aactcgacaa ccagtatata ggaccatacg agataagcga      5640
     gattattgat aagcataatg ttaagattaa gttaagcagc ggtagatata agatagtaca      5700
     cagcgataag ttgaagatag ctcacgtgga gcccccttcc gaagcagcca ccccaccatc      5760
     cagcagcgac gacgtggaaa gggaagcagt gggcccgact cctcgtcagt caagggatgc      5820
     ctagcagcac aaaaaggaaa ccatgtacgc gagctccatt ttcacgttgc tgatgatacc      5880
     tgtgtgtgtg cgtgggctga tagggtatga ctgtcatgga gaggggttaa acataacaac      5940
     cctttctttg ttggacatcg gatcctgtaa ccttgacgac gtagaaccta ttaacgacga      6000
     agtctacgtc caactaatgc aattatcgga ctacaatcct gtatctacaa agcagtgtcg      6060
     cgttgaaata gatcggatta tttattattg tgggatgcac tcccacgtat ctattgttgg      6120
     caacggacgg cggcaataca tccgagagtt gggcgctgac gcatgccgcc gactccatga      6180
     gacgggggtt ttagctattt caacgaccac aatcgacaaa ctggtgataa actcaacgaa      6240
     tttgcggagt cttactctgg ccgggagagt tgcaaccgat ggaagatgcc acggagccca      6300
     atacactgat agctatggta cgtgggacaa tgtcgtcgtt caagccaccg ctaaaatctc      6360
     ccttcgaaca ttcgaggcaa acatcaagca atcgactggc gaaattattt taccatctgg      6420
     aacacgctgc gcggtgagca atcgcgtatg tttcgatgcc gatggatcgg agacatattg      6480
     ggaaatgacc ccctctgaca gctgccattt tgatcgctac gacatactat acgaaggcat      6540
     ggcaaacaga ctttccccag cgaaggggca ggtaacgccc gtcgtatata cagtgacttc      6600
     aaaggacacg acgttcgcat tgacaaagag tgccgaagta aacgtgtgtg gatataagtt      6660
     gtttaaaacc gaacatccaa aactgttaat tttcgaaaca cagcgcgggc agacatttaa      6720
     atcgcgatcg cgggtgtcgg tgaatgattt ggacatgttc acgtatgtaa attcgaaatt      6780
     cgtgtacgtc gagaaacata taaagttaca actcacgcgt ctgtataagg acttaatgga      6840
     acaaaagtgc gcgctggagc gtcaagtgtt acagaatgtt ctgtctctct caagcatcgc      6900
     cccagacgaa atggcattcc gcatgatgaa gatgccaggg tatactgctg taatctccgg      6960
     cgaggtaatt cacctgataa agtgcgtgcc agcacaatgc aagattcgtc atacggagag      7020
     ctgtcataac gaacttcccg tgacgtaccg gaacgaatcc tattttttgc tgccgaggtc      7080
     acgaattctt acgaagaaag gaacaccgcg agactgtcac ggattactcc cgacaatgta      7140
     taggattcag gatacgtggt tccgtattac cactaggccg gaggagacaa ttgcaccgcc      7200
     aactatacag ccgttgacgc agccgtcgtg gaagtacgtc agcccggatt ccttggcagt      7260
     cagcggaata tacaccgcgg aagatcttga ccgtcttagg gatcatataa tgttcccagt      7320
     ggaaaaacca tcgacgctga acacaatagc ccgaggagcc aggggccagg acataccatc      7380
     aggtagcatt tcaatcctaa atttattaga cgaaaagtcc ttggaccgta ttggggaaaa      7440
     tgcgggtaaa cgaatctgga acggattcat gagttttggc tcattcagcg cgggggtgct      7500
     ggcaatattt gtcatcataa ggataataaa actaattatt gacacactta tacacgggta      7560
     cgcactacac tccatttacg gatggagcat acacctattg ggtgccatat ggagctcggt      7620
     aacaaacctt ttgctgcaca tgggaaatga gaaacgagta cccacaccgg ttgtcaacag      7680
     ggaatacatc ctaattcgcc cggaacccaa ggacgggaaa ataatattta gtcaagaagc      7740
     gccttccaca gaacaagcgg aggggcagag cggaaatcct tcaaccgagc gatcatacgc      7800
     ccaactgcgt aaatatttag aaagcgaaag cctgtaacaa cacttttctt tttttttctt      7860
     ctttttttta tttttacaat aagcgtagct gtaagtgata gacataaaac tagtaagcat      7920
     gccagattaa ttataaaaaa tgttggacat ggtccaacat tttcatcgat ggggggaggt      7980
     gttacatccg ccgtttcccg gtgtaaattt ttgcaaggat gataccgagt aaaattcaga      8040
     acataaaact tttgattgag actataacca tggaaacggg ataggaagcg tcccctccct      8100
     cgatattagc gccgcagtcc attcacttgg ggcgaccacg aggtatccac cccactctgt      8160
     acccaaagta agtgccatat tctcattaag cgtattacgg cgcataaatt tccttt          8216
//
ID   Gypsy-11_SI-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   AEAQ01022239;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_SI_;
KW   Gypsy-11_SI-I; Gypsy-11_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-228
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022239; Positions     256      29.
XX
SQ   Sequence 228 BP; 55 A; 59 C; 48 G; 66 T; 0 other;
     tgtcaagtgt ttaaataatg tgcccgcgta ccccggcctc tcaatcgcga caaatagttt        60
     caaggaatct ccctgccact tattacgatt gggtagcgac cgcccgctgt atgcgcgccg       120
     tgttttatcg tcatcgattg gatcgctaca atataatttg tgaaacttgt tatcggaact       180
     ttccctcgac cgtctcggag cattattgta aaaggaaccg ccattaca                    228
//
ID   Gypsy-11_SiCu-I repbase;    DNA;    INV; 4145 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4145
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5035-5035 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..4041
FT                 /product="Gypsy-11_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTKDKDTSTFLAPEKFTFDARDWPTWIQRFKRFRLLS
FT                 SLSDKDEEYQINALVYTMGEKADEILSSFSLSDADAKKFDKVLEAFNNHFV
FT                 GKRNIVYERARFGLRQQEDGETIENFVTDLHALSEHCDFKSLRESLVRDRI
FT                 VLGVRDKKLSEKLMLTENLDLAKAVDLAKQWEAVKRQQGDLQGNQSRELDS
FT                 VDKRHGTQSKGNSTQPTSSSSYSRSRKPTKSGLCKFCGNEHEFLKSKCPAV
FT                 GKECSNCHEKDHYARCCPLSTKQKPTGSADRVQLTENTFMVDSIAQSNASD
FT                 KISRAKRWTTTVFVDNTPIEFKLDPGADVTSVPYYTFRKLWRQRRIFTTTF
FT                 KLAGPDDTVLQVCGTVKAKLAVNGHEIEEEIFIVKNLKRPLLGLRACEDLH
FT                 LVKRLEEIVTKENTEIRPYQEFPELFQGLGKLGSEYTIKLRSDARPYAMHS
FT                 PRRIPIPLMNTVREKLDLMAKEGIIEAVDEPTEWCAPLVTAPKPNGDIRIC
FT                 VDLTALNKSVEREFHPMPVIEHTLGQLAGAKIFSKLDANSGFYQIPLAQES
FT                 RNLTTFITPFGRFRYTRLPFGITSAPEHFQKRMMEILKDMPGVQVHIDDVL
FT                 IFGSSVLEHDQTLRSALQRLRQAGVTLNKEKCEFGMESVKFLGHILDKNGV
FT                 RPDPSKVEAIASMAPPSDVTEVKRFLGMTNFLGRFIPHLSTISKPLHELTQ
FT                 RDKIFVWGASQDIAFNKIKNLLTSAPVLALYDPNKFTVLSSDASSYGLGAA
FT                 LLQKQDDGHLKPVGYASRTLSDAETRYAQIEKECLGIVWAAERFRDFLMGL
FT                 QFQVETDHKPLLPILTTKCVDDLSPRLQRFRIRMMRYSYTIKYVPGKELVT
FT                 ADTLSRRPHPQPADLKFQEDVSAYVCHVVSHLPATDEKLSQIFEAQQQDPT
FT                 IIAVMRYSMSEWPLQPIDPEIKKYYQVRDELSVQNGLLLRNCRLVIPKRLR
FT                 EEILGKIHAGHLGIVKCRARARESCWWPGIGEDIAEVVRRCPVCIQERKER
FT                 KEPLMPMDFPSRPWQRLGMDLFKTHGKWFILVVDYFSRYPEVAELKSLSSA
FT                 AVINVLKVFFSRHGVPEEVISDNGPQFHPVLGSPFNEFSKDFGFNHRTSSP
FT                 RYPQANGFVENGVKIMKNLLQKNDDWYKAILEYRATPLPNGYSPAELLMGR
FT                 RIRTTLPMNPTRFVPKEVCSKDLFSKEETRRQQQKKYYDGRHGVRSKGDFS
FT                 IGDIVWVKDLRIWGTVCKTAGTPRSYVIHTARGEFRRNSSHLTRGYKAALP
FT                 EESDPDFPESYNHSMPEDQGSCQSTGVRTRSGRLVKPPRRLIEEI"
XX
SQ   Sequence 4145 BP; 1223 A; 955 C; 943 G; 1024 T; 0 other;
     tggtggcagc ggttagagaa tccatttctc ccagtttagt gttacattaa cagaaagtaa        60
     cctaccagtt agtgattgtg ttgagctaaa ccaaagtcga caaatcatca tcagtcagtc       120
     aaaatgacaa aggataaaga taccagcact tttctcgcac cggaaaagtt cacgtttgac       180
     gccagggatt ggcccacatg gattcagcgt ttcaaaagat ttcggctcct cagttcattg       240
     agcgataaag atgaagagta ccaaatcaat gctctcgtgt atacaatggg ggagaaagca       300
     gacgaaatcc tttcctcctt ctcattatct gatgcagacg ccaaaaagtt tgacaaagtc       360
     ttggaagcgt tcaacaatca cttcgtagga aagcgtaata ttgtatacga acgtgctcgc       420
     tttgggctac gccagcaaga agatggagaa acaatcgaaa atttcgtgac cgaccttcac       480
     gctttatcag agcattgtga cttcaaaagt cttcgggagt cactggtgcg tgaccgaata       540
     gtcctcgggg tgcgagataa gaaattgagc gaaaagctta tgcttacgga aaatctggac       600
     ctagccaaag cagtggatct ggcaaagcaa tgggaagcag taaagcgtca acaaggcgac       660
     cttcaaggca accagagtag ggaactggac tctgtcgaca aaagacatgg aacacagtct       720
     aagggaaact ccacacagcc cacatcatct tcaagttact cacgatcaag gaaaccaacc       780
     aagagtggac tttgtaagtt ctgtgggaat gaacatgaat tcctcaaatc caaatgcccg       840
     gctgttggaa aggaatgttc caactgtcac gaaaaagatc actacgcgcg gtgctgtcct       900
     ctgtctacta aacaaaaacc aaccggaagc gctgatcgcg tacaacttac agaaaatacc       960
     ttcatggtag attccattgc acaatcgaac gccagtgata agatatcccg tgccaaacga      1020
     tggactacaa cagtattcgt ggacaacaca ccaatagaat ttaagcttga tcctggagca      1080
     gatgtgacaa gcgttccata ctatacattt cgaaagctgt ggagacaacg tcggattttc      1140
     actacaacat ttaaattggc tgggccagac gatacggtcc tacaggtctg cggcactgtc      1200
     aaagccaaac tcgctgtaaa tgggcatgaa attgaggagg agatattcat cgtgaaaaat      1260
     ctcaaacgac ccctccttgg tctaagggca tgtgaagatc tccatcttgt gaaacgactt      1320
     gaagaaatcg tcacgaaaga aaatactgaa attcgcccat atcaggagtt tccagaattg      1380
     ttccaaggcc ttggcaaact aggctcagag tataccatca aattgcggtc agatgcccgt      1440
     ccatatgcca tgcatagccc acgtcggatt cccatacctc tcatgaatac tgttcgtgaa      1500
     aaactggatt tgatggcaaa ggaaggaatc attgaagctg tagacgagcc aacggagtgg      1560
     tgtgcaccgt tggtgaccgc ccctaaaccg aatggagaca tccgaatctg tgtggatttg      1620
     acggcgctca ataaatctgt ggaaagggag ttccatccca tgccagtcat tgaacatacc      1680
     ctcggtcaac tggcaggtgc caaaatattt tctaagctag atgctaactc gggcttttac      1740
     caaataccac ttgcacagga aagcagaaac ctcacaacat ttatcacgcc ttttggccgt      1800
     ttccgttata cgcggctacc ctttggaatc acctctgcac cggaacattt ccagaaacgg      1860
     atgatggaga tactcaaaga tatgcctgga gtccaggtcc atatagatga cgtactcatc      1920
     tttggttcgt cggtcctaga gcacgatcaa acgttaaggt ctgccctcca aagacttcgt      1980
     caagctggcg ttactttgaa caaagaaaaa tgcgaattcg ggatggagag tgtgaagttt      2040
     ctcggccaca tactagataa aaacggagtt cgtcctgatc caagcaaagt agaagctata      2100
     gcaagcatgg cgccgccatc agacgttacg gaagtgaaac gtttcttagg tatgaccaat      2160
     tttcttggac ggttcatacc gcatttatcc accataagca agccactcca cgaacttact      2220
     caacgggata agattttcgt ttggggtgct tcccaagaca ttgcctttaa caagattaag      2280
     aatcttctca catctgcacc agtattggct ctatatgacc ctaacaaatt caccgttttg      2340
     tcttcagatg cttcctcata cggtctcgga gccgcgttgc ttcaaaaaca agatgacggc      2400
     catttgaaac cagtgggata tgcttcaaga accctgtcgg acgcggagac aagatacgcg      2460
     caaattgaga aagaatgtct gggtattgtt tgggcggcgg agcggtttcg agattttctg      2520
     atggggctcc aattccaagt ggaaactgac cataaaccac ttcttccaat tctcacaacc      2580
     aagtgcgttg atgacttgtc ccctagactc cagcgtttcc gcatcagaat gatgcggtat      2640
     tcatacacaa tcaaatacgt acctgggaag gaactagtca ccgctgatac gctaagtcgt      2700
     cgaccccatc cacaacctgc cgatctcaag tttcaagaag atgtatctgc ttacgtttgt      2760
     cacgtggtat cgcacctccc tgcaacagac gaaaagctca gccaaatatt tgaagctcaa      2820
     caacaagatc ccactattat cgctgtgatg agatacagca tgtcagagtg gccactgcaa      2880
     ccaatcgatc ctgaaatcaa aaagtactac caggtacgag atgaactttc tgtccaaaat      2940
     gggcttctgt tgaggaattg ccgccttgtc atcccaaaac gtctgagaga agaaatcctt      3000
     ggaaagatac atgctggaca tttgggtatc gtcaaatgtc gtgctcgagc ccgcgagtca      3060
     tgttggtggc ctggaatcgg agaggatatt gccgaagtag ttagacgttg tccggtatgt      3120
     attcaggaac ggaaagagag gaaagagccc ctaatgccaa tggattttcc gtcgcgccca      3180
     tggcagcgac tcggaatgga tctgttcaag actcatggaa aatggttcat tttggtcgtc      3240
     gattatttct cacgctatcc tgaggttgca gagctgaagt ccttgtcatc tgcggctgta      3300
     atcaacgtgt tgaaagtatt tttctctcgc catggtgtgc cggaggaggt gatatcggac      3360
     aacggacccc agtttcatcc cgttcttggc tcacccttta atgaattttc aaaggatttt      3420
     ggattcaatc atcgtacttc cagcccacgt tatccacagg caaatggctt cgtagagaat      3480
     ggagtcaaaa tcatgaagaa ccttctacag aaaaatgacg actggtacaa ggctatattg      3540
     gagtaccgag ccacacctct ccctaacggt tacagccccg cggagcttct catgggccgc      3600
     cgaattagga ctacccttcc aatgaaccca actcgttttg taccaaagga agtgtgcagt      3660
     aaagatttgt tctcaaaaga agaaactcgt cggcaacagc agaagaaata ctacgacggg      3720
     cgtcacgggg taaggtctaa aggtgacttt tccataggag acatcgtgtg ggtgaaagat      3780
     ctgcgcattt ggggaacagt atgcaaaact gcggggactc caagatccta tgtcatacac      3840
     actgcacgtg gcgaatttcg tcggaattcc tcccatctca ctcgtggcta taaggcagcc      3900
     cttcctgagg aatccgatcc tgacttccca gaaagctaca accattcgat gccagaagat      3960
     caaggatctt gccagtctac aggagttaga acacgttcag gacgtttggt gaagcctccg      4020
     cggcgattaa tagaagaaat ttaaaagtcc atttgatgta attttattta atattttgat      4080
     taataatcca tttgttctga taataattta atgtatcaat ttttaattga tcttgaaatg      4140
     gggga                                                                  4145
//
ID   Gypsy-11_SiCu-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-258
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5088-5088 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 258 BP; 80 A; 43 C; 51 G; 84 T; 0 other;
     tgtgatatat ggggttacgt aagaaagagc gaacactcaa tctcttctca tgctgatcac        60
     tagagatccg tcttgccgtc tgtgtctaca gaggagctca ttcttgcagt agagatcatg       120
     agagttgtct gtactaatta cttggaggag caagtttgtt attaatatgt atattgaaga       180
     tactaataaa ctagtaaatt aaagacattt tctcgttcag ttattttcgc atcaatgttc       240
     gagaaaccaa acattaca                                                     258
//
ID   Gypsy-11_SiOr-I repbase;    DNA;    INV; 8082 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-8082
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 347-347 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           823..2202
FT                 /product="Gypsy-11_SiOr-I_1p"
FT                 /translation="MEVTAFQSGHLLIDELNYELEIRQTITERPMNEKRKI
FT                 LCRLLEKERMKPGCLIDMSSYDKPFEQECTEINFTVDSIKTLISDFEGSVS
FT                 DSLFKRIKSRLFHVLGRIKRVPLPSVEDEDVLRRARTFKNETYATCIQLEA
FT                 DLHERVQPSRAASPNLLGFGDPSSFQPIINVPAPVINVGRSINLSEWGIKF
FT                 SGDGRQVFNFLERVEELALSRNVNRDELFRSAVELFTGEAFIWFRSIKDSV
FT                 HDWESLVKRIKLDFLSAEIDDDLWDQIKGRKQKKNETVVIFVSHMEALFSR
FT                 LSHPPHETTKVKILRKNLLAIFSNQLALVDIVSVSNLVDMCRKLEANLRPV
FT                 NEQSVAHVCSCSTSGQAGSSSSQSRSVKSPVSNSVNNFRKNLSKNFKQNKA
FT                 AHPINTPTSTSQEPSTSSVPKTPSTCWNCGQQGHLFYNCKLQSKTFCYRCG
FT                 LPNVTMRNCPKCSKN"
FT   CDS           2190..2582
FT                 /product="Gypsy-11_SiOr-I_2p"
FT                 /translation="VFKKLVIEARRPSRRTSSRFNITDWESWLRTVRSFLK
FT                 RRTPKRLKTDSKISTILFKKPLDNRFFIKIDVFSHEFTVLIDSGCTTTVIG
FT                 SEGINFLSKLGITKNSSTFSTVSLADGSKKRCSGCNRSTDCCR"
FT   CDS           2582..5509
FT                 /product="Gypsy-11_SiOr-I_3p"
FT                 /translation="ISAVLLFLLLVVPSLKLSFILGSDFFTQSAAIIDYKT
FT                 NSFRIQNCQDCVLGAQDFEGDFNFKNNDLFSIDDLTTRQQNTAETIIRSFE
FT                 VIDSEHRLGRTNKIELTIETGDAKPFKKRPYLLSPYMHKILNDELDDMLKL
FT                 GVIEPSSSPWSSPVLLVKKKTGEYRFCFDGRPLNEVTKHDSYPLPRIDRIL
FT                 NMLRDAKFISSIDLRKSFWQIPLHPSSREKTAFSVIGRGLFQFVTMPFGLC
FT                 NAAQTQQRLIDSIFGPQYEPNIFCYLDDIIVCSATFEEHIKLLSVVRDKLK
FT                 EANLTINTKKCEFFKTSLKFLGYVVGGNSLRTDPDKISAMINYPRPTTTTE
FT                 VKRFIGLCSWYRRFIKDFSTLVSPINDLLKGKKKKRESISWSSEAESSFIK
FT                 IKEALVSSPVLSQPDFSQPFTIQCDASNTGLGGVLTQVLDGEEKVIAYASR
FT                 SLSRAERNYSVTERECLAVIFSIEKFRPYVEGTKFTVITDHYSLLWLSNLK
FT                 NPTGRLARWSLRLRQNSFDLVHRKGADHVVPDALSRMFEESVPPEISTLGV
FT                 DIDRIDPWYANLREQVRASPDRYPQWKLESEMLYKFVPCYLPVKTNILEWK
FT                 ILVPKPQTYDIIRSCHDPSTSAHLGFYKTLSRIRELYYWPKMRHQVLRYVR
FT                 SCKVCGAQKATNAARIGFMGKEKEAKFPWQIIAVDLVGPLPRSKKGFTWLL
FT                 VVGDWFSKYTLVHPLRTATAKNISNFIENNVFLVYGVPQYVICDNAPNLSG
FT                 RVLRDLCSQYRVQKILFNAVYSPQCNFVERSNRTVSTAIRCYIDEHQNWDA
FT                 ELPKIQFAINTSRHEITKVTPSFLNFGRHVPVSGDYYGSDAMNNVDFEILP
FT                 GDRKGYAAELGGLRDLFLDVRKNMHKAYLQYANAYNLRKREISFSIGDKVW
FT                 RRNKVLSNAANKFAAKLAPKFVLCTVTKKLSRLVYTLSNPDGSTAGNWHVK
FT                 DLKPYSPVEDDSSSSSMHSDA"
XX
SQ   Sequence 8082 BP; 2156 A; 1326 C; 1665 G; 2935 T; 0 other;
     cttaatttgg cacccataaa cgtggggcct tgagaaattt ttactcgtaa catttcactg        60
     gagtctgaca atttttctta ttaattttct tacattaatt tttgtagttt aatctttttt       120
     ggcatgatac agaggaagaa acggttgtag tttctcttgg tacgatttaa gactgaaatt       180
     tctattctct ttcttatttt tgatatttct atttattatt atttgggtct gtagaatttg       240
     gacaatttca tattacggag atatatcagc tgggtatttt ggtatttttg atattttgat       300
     atatttttga acctggtata cagggcggtc aagatttaat gcttggacct gaattttttt       360
     tggggttaaa atttttaata gtttaaaaaa tttttttctt ggtagataca cttgaaagtt       420
     tatctattgt tggaacttcc ttatacaggg tggtcaacat atttttttgt gactttgaaa       480
     ttttttaaat ttcaaggtgt ttgacatttg ataaagtttg aaactttata tttacagaca       540
     ttttggtttg tatttttccc tatacagggt ggacaagcat taaattttcg actttgattt       600
     ttttatctct aggtgtttga aatttgatat aaattttgga cgttatactt aattgagatt       660
     attttgataa ttttacaata ctgggtggtc acaacttgac cattttgaat ttgtttttgt       720
     tgattaattg attgcaatta atttaacagg ttttgaaatt gtcgataacg acaggctata       780
     ttatttttga tttttatctt gacaattttg aattttttta agatggaggt taccgctttc       840
     cagtcgggtc atttattgat cgatgagctt aattatgaac ttgagattag acagactatc       900
     acggagcgtc cgatgaatga gaaacggaag attttgtgcc gtttattaga gaaggaacgt       960
     atgaaacctg gttgtctgat tgacatgtca tcgtacgata aaccttttga gcaagagtgt      1020
     actgaaatta actttacagt agattctatt aaaactttga tttctgattt tgaaggttca      1080
     gtttccgact ctctatttaa gcgcataaag tctagattgt ttcatgtgtt aggccgtatt      1140
     aagcgagttc ccttgccgtc agttgaagac gaagacgtgt tgagacgcgc tagaactttt      1200
     aaaaacgaaa cttacgctac ttgtatacag ttagaagcag acttgcacga acgcgtacag      1260
     cctagtagag ctgcctctcc aaatctttta ggtttcggtg accctagtag ttttcagccc      1320
     atcattaatg tacctgcacc ggttattaat gttggtaggt ctataaattt atccgaatgg      1380
     ggtatcaagt ttagtgggga tggtagacaa gtttttaact ttcttgaacg cgttgaagaa      1440
     ctggcattat cgcgcaatgt aaaccgggat gagttgttta gatctgcggt tgagcttttt      1500
     accggcgaag cttttatctg gtttcgtagt attaaagatt cggttcatga ttgggaatcc      1560
     ttagttaaac ggattaagtt agattttctt tcggctgaaa ttgatgatga cttgtgggat      1620
     cagattaagg ggcgtaaaca gaagaaaaat gagactgttg taatttttgt ttcgcacatg      1680
     gaagctttat tttctcgttt gagtcaccct cctcatgaaa cgactaaagt taaaatcttg      1740
     aggaagaatt tattggctat tttttcaaat cagctcgcgt tagttgatat agtttcagta      1800
     tcaaatttag tggacatgtg tcggaaacta gaggcgaatt tacgtccagt taacgagcaa      1860
     tcggttgctc atgtttgtag ttgtagtact agcggtcaag ctggatccag ttcaagtcag      1920
     tcacgtagcg tgaagtctcc tgtctcaaat tctgttaata attttagaaa aaatttgagt      1980
     aaaaatttta agcaaaataa agcagcacat cctataaata ctccaaccag tacatctcaa      2040
     gaaccaagta caagttcagt acctaaaact ccttctacat gttggaattg tggccaacaa      2100
     ggacatttgt tttataattg taaattacag agtaaaacgt tttgttatcg ttgtggttta      2160
     ccaaacgtaa ctatgagaaa ttgtcctaag tgttcaaaaa actagtgata gaggcgcgta      2220
     ggcccagtcg acgaacctct tctagattta atatcacaga ttgggaatct tggcttcgga      2280
     cagttcggag ttttcttaaa cgaagaactc cgaagagact aaaaactgat tctaaaattt      2340
     ctaccatttt atttaaaaag cctttggaca atagattttt tattaagata gatgtttttt      2400
     ctcatgagtt tacagtactt attgattctg gttgtacaac cacagtgatt ggttcggaag      2460
     gtataaattt tcttagtaaa cttggcataa ctaaaaattc ttcaactttt tcgacagtta      2520
     gtttagccga tggttctaaa aagagatgta gtgggtgtaa tagatctacc gattgttgta      2580
     gataagtgct gttttgttat ttctgctttt agtagtaccg tctcttaagc tcagttttat      2640
     tttaggcagc gactttttta cacagagtgc tgcaattatt gattataaga caaatagttt      2700
     tcgcattcag aattgtcaag attgtgttct tggtgctcaa gactttgagg gcgattttaa      2760
     ttttaaaaat aatgatttat tttcgattga tgatttaacg actagacagc agaacacggc      2820
     tgaaacaatt attcgatctt ttgaagtaat tgatagcgaa catcgtcttg gaaggacgaa      2880
     taaaatagaa ttaactatag aaacgggaga cgcaaagcct tttaagaaaa gaccttattt      2940
     attatcaccg tatatgcata aaattttgaa cgatgagttg gacgacatgc tcaaattggg      3000
     tgttattgaa ccttcttcta gtccttggtc ttctccagtt cttttagtta agaaaaaaac      3060
     tggcgagtat cggttttgtt tcgatggacg tccactcaac gaggtgacta agcatgacag      3120
     ttatcctcta ccccgtatcg ataggattct aaatatgttg cgtgatgcaa aatttatttc      3180
     ttcaatagat ctcaggaaat ctttctggca aattccactc catccttcgt ctagagaaaa      3240
     gacagcgttc agtgtgatag gacgtggatt atttcagttt gtaaccatgc cttttggtct      3300
     ttgtaatgct gctcagacac aacaacgttt gatagattca atttttggtc cacaatatga      3360
     accaaatatt ttttgttatt tagatgatat tatagtttgt tctgctactt ttgaagaaca      3420
     tatcaagctg ttgtccgttg tcagagataa gcttaaagaa gctaacctta ctataaatac      3480
     caaaaagtgt gagttcttta aaacatctct taaatttctt ggatatgtag ttggtggtaa      3540
     ctctttacgc accgatccag ataaaatttc ggctatgatt aattatcctc gtccaaccac      3600
     cacaactgaa gtcaaacgct tcattggtct ttgctcttgg tacagacgtt tcattaaaga      3660
     tttttctacg ttagtttcgc cgattaatga tttattaaag ggcaaaaaga agaagagaga      3720
     gtctatctct tggtcttctg aagccgaatc ttcttttatt aagattaagg aagctttagt      3780
     ttcttcacct gtcttgtcac aaccagactt ttcgcagcct tttacaatcc aatgtgatgc      3840
     ttcgaataca ggacttggag gtgtccttac acaagtctta gacggagagg aaaaagttat      3900
     agcttatgct agtcgttcat tgtctagagc ggaacgtaac tattctgtta cggaacgcga      3960
     atgtcttgcg gtcatttttt cgatcgagaa atttcgtcct tatgtcgaag gtactaagtt      4020
     taccgttatt actgaccatt attctctact ttggcttagt aatttgaaaa accctacagg      4080
     gagattggct cgttggtcgc ttaggttgcg acaaaattct ttcgatttag tccatcgtaa      4140
     aggggcggat catgttgttc cagacgcatt gagtcgcatg tttgaggaat cagttccacc      4200
     agaaatatcc acccttggag ttgatattga taggatcgac ccttggtatg cgaacttgcg      4260
     cgaacaggtt cgtgcatcac cggatcggta ccctcagtgg aagctcgaga gtgagatgct      4320
     gtacaagttt gtcccttgtt acttacctgt taaaactaac attctggaat ggaaaatttt      4380
     agttcctaag cctcaaacgt atgatatcat tcgctcttgt catgaccctt ctacttcagc      4440
     tcatcttggc ttctataaaa ctttatctcg cattcgggag ttatattact ggcctaaaat      4500
     gcgccatcaa gtactaagat atgttcgttc atgtaaagtt tgtggagcac agaaagccac      4560
     aaatgctgcg agaataggtt ttatggggaa agagaaagaa gcaaaatttc catggcagat      4620
     tattgctgta gatcttgtag gacctctacc gcgttctaag aaagggttta catggttatt      4680
     agtagttgga gattggtttt ccaaatatac gctagtacat cctctacgta cggctacagc      4740
     caagaatatt agtaacttta tagagaataa tgtgttttta gtctatggtg tacctcagta      4800
     tgtgatttgc gataacgcac cgaatttgag tggtagagtc ttgcgtgatt tgtgttctca      4860
     atatcgagtc cagaagattc tgttcaacgc tgtgtattcg cctcagtgca attttgtaga      4920
     gcgcagtaat cgaacggttt ctacggcaat tcgttgttac attgatgaac atcaaaattg      4980
     ggatgcagag ttacctaaaa ttcagtttgc gattaacacc agtcgtcacg aaatcacaaa      5040
     ggttacacct tcttttttga attttggtcg tcatgtaccc gtgtctgggg attattatgg      5100
     ttcagatgcc atgaataatg ttgattttga gattttacct ggcgatagaa agggttatgc      5160
     tgccgaactt ggaggtttac gcgatttatt tttggatgtt aggaaaaata tgcataaggc      5220
     ttatcttcag tacgcaaatg catacaatct ccgaaagaga gagatctcgt ttagtatagg      5280
     agataaggta tggcgtcgca acaaggtttt gtcgaatgca gctaacaaat tcgcggctaa      5340
     gctagcaccc aagtttgttt tatgtacagt aactaagaaa ctttcacgcc ttgtttatac      5400
     tttgtcgaat cctgatggat ctactgccgg aaattggcat gttaaggatc ttaagcctta      5460
     cagtcccgta gaagatgatt cttctagttc gtctatgcat tctgatgcat gagacttatg      5520
     ttttagtttt ccggccgtgc gatatatttg tctggatgac atctatatcg aatatagttt      5580
     ttctcgttct cgagagatac atttgtcttg acgacatctg tatcatattt agtttttttt      5640
     tgggtcattc ccatgagata tatttgtctt ggtgacatct atattatatt tagttttggg      5700
     tcattcccat gggatatatt tgtcttggtg acatctatat catatttagt ttttttttgg      5760
     tcattcatga gatatatttg tctaggtgac atctatatca tatttagttt ttgggtcatt      5820
     cccatgggat atatttgtct tggtgacatc tatatcatat ttagtttttt tgggtcattc      5880
     ccatgagata tatttgtctt gacgacatct atatcagatt tagttttttg gtaaattttg      5940
     gcagtaaaat cccatacagc cggatttaca gatacttgga gattcttatt agcatacata      6000
     gaggggtgac gatttctcta ttgtactgca gattctctat ttattttttt tggttttggg      6060
     gtggttgttt cgcgagcaat cataccatta ttttggttta ggatagcaat atcagcaaga      6120
     taattgtagg tttagtgcca gatgagttgt catgaagaca actacatcct gtatgactgt      6180
     tgggaaatag tcatacgttt atttagttta agtttagctt agtttagtac tttaggttat      6240
     gtacagtagt tgtacatatt ggagtttgga ttggagcaat gtcgcttcgg acatgtttgt      6300
     gactgtagtc agttttgggt tgaacctagt actggtttgt tgtaactctt tgagtttggt      6360
     tgtcattttg acatttgtct tgctgatttg tttgttttgt gttgatctat ggctatgacc      6420
     tagtctatgg tcatggtttg ggccgtgtgg ctcgtatccg ctctacatgg tgggcgagtt      6480
     gagtgtgcta ctggttagtt gcatactcaa cagtaaagaa tagccatgta cgggttcctc      6540
     gtgacggtaa gagtccgtca aatgccaccg tagtatgtgt aagtctcaga acatcgagag      6600
     tgttggaaat tctttccata caccttatcc acatactacg tatatggtat tgcgtgtgtg      6660
     gtgttgtgtg ggtgatgttg cgtatgtggt actacgtgaa tagtactaca tatgtggtat      6720
     tacctgtaca gcattacttc atcgtaatac ctatttaata ggttttactt tagtaagtaa      6780
     aacctatatt tattcatttt ttaaattgat tcgattgaca tacctggtta gggttccgtc      6840
     gccatttgct tgacagggcg ttgaccttcc gtcgaccacc ctaggcgatg cgtattttgt      6900
     tttttctttc tttctgagct aaggctcaga aggtttttag ttgcatattt tttttgttga      6960
     atgtacacga gtcggcatgc gattggtacg gcgtaaaacg tggccaatgg cataaattga      7020
     actcggccat tcacatgtag aatcattttg ggatatcgtt gtagatatgc tctatttatc      7080
     ccattttagt tgatgtacac tacagtgcat cccctcgtgc tgacagatgt agggtattat      7140
     ttttccatat tcatttcatt ttaacttttc tttacagttc tgtctcttgg tgatcatttc      7200
     tggtttatgt tgttgttggt tccagtcact gcgttggaga gaagggttga gctagtgcaa      7260
     tcttgttgag gtgttagggg taccttcttc agcctctgtt gctctagtct gtaattcctt      7320
     gtctgacgtt gttagtatga tacgctccgt ctgagagaag gtttgaatta gagcacagta      7380
     aatttgtctg gttatttagg tcttagagta ccgaccgtca acctttactg ctctagttcc      7440
     atataattcc ttgtctggcg ttgttagtat tgttcattcc gtccgagaga aggtttgtac      7500
     ttgcacagta aatttgtttg gttgttttgg ttttaggtta ccggccgttt atagctgctc      7560
     tagtagtgta ttgttccttc tctggcgtag ttgatctgac atgaactaga atgttggttc      7620
     cagcaactat caccaaggtt ataaaccgag acgtatcgat accatgaatg gatcgacgtt      7680
     ctctttaatg attgttgagt cgcgttgttt tagaacaaag cgttattaat tttgagtctg      7740
     cacctgtcta gtctgcatta tcgataattt acacctatat cgttttataa cacctaacta      7800
     taacagtatt ttttaatctt gcataccata atagctgata tacctccgta ttattttatt      7860
     ttagcagaac aatggctcga gtatctctgt actttacggc gtatccagta accagcagct      7920
     ttagtaattt tacaccttta aatttttttt ttgatctcca gcgtcatgta ttctgaaatt      7980
     tacgaagtag ttctcttctt ttgacttttt ttactatccc cagatttgtg aaaaagaaag      8040
     tgtacctaca ggtccatttc ttttcttttc ggaggagggc ag                         8082
//
ID   Gypsy-11_SiOr-LTR repbase;    DNA;    INV; 1464 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1464
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 380-380 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1464 BP; 395 A; 260 C; 276 G; 533 T; 0 other;
     tgtaacgttt ttagttcgtt acatgtcttt gattatgata tatgatgtct gggcacaacc        60
     ctgttatggt ttggcacaac cctgttattg ctctgtggga gcgcgcgctg tcaacatcgc       120
     ttctgtcaat tctctgtgat ctaacttcac ttttggttag actgtttgac ctgtcagacg       180
     ccattagtcc cagtttttga gaaatggtga ttatttaaat cttgctgtgt aatctgaatc       240
     agctgccatt tcgaagctac aggtaaagct gagttatttt cccttttaga ttcgataatt       300
     attagtgaat atattttagg gtagagttac ggatgtccca acttgtattt gtatttggct       360
     ggcacgttgg cgtccctttg cttttgtcct ccagaatgtc atttggaaga aaggacagat       420
     tgtttattat ttattgagcc ctcggaagta cttcgaggta ggttcatttt gtttattaga       480
     cggtgtttga ttttaaacaa tgggtttcgt gttcttaggg tcttacggac ggactattta       540
     caaggtacgg gcattatcca aggtcctagt attctcttgt gccactgtct tatggacgga       600
     tgtcccatgg acaagtgtcc cctgtaggat tgatttgtct tcacatagag tgccccagcg       660
     tgggtgtggc ttgagccccg tgctgcttca cccccatttc taagcctgga tcgccgacag       720
     acagtgcaga gatgcaagac ctcctcgcgc tgctactggt tgaagcaggg ttacattaaa       780
     gaacagctaa gtgtaatttt aagttctagt attgcattta acacctaaaa tgttttcagt       840
     cttaaacagt aacgtacatt taaactatag cgtacagact atatttagtg gttagattat       900
     taagaatatt tatgtcaatg cagtagtaaa agtgtgattt agattttaga tttcataata       960
     tcacgcattg taatggtatt actttctata gacatcatta ttacgctata ctaatagatg      1020
     aatgacgaga tagattctag aatctacagg ttgcaacaca tctgattgaa caccgtataa      1080
     atttaacaat ttaaataaag taatgctact tttcttatat tttctctaat gttacacgca      1140
     ttgtattttc cttatagtct ttacatagaa cgtatttaat attatttaca tatatagttt      1200
     tattcaacag gtaaccacta taataattat taaaattgta caatgctatt caccatcaga      1260
     attcgtcacg aataaatata gtcattagtt ttaagtatta tacaattgtg ttttctttct      1320
     ctgtacatgc ctggcgccca atatctagat atcttttgtt tattattatt gattaatttt      1380
     ctctctagtg aaatacctta tccacgactg ctctccgatg aaaagctgcc gttcgcagtg      1440
     gtagttgttt taaaaaacgc taca                                             1464
//
ID   Gypsy-11_SpEx-I repbase;    DNA;    INV; 6337 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6337
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4080-4080 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           531..5333
FT                 /product="Gypsy-11_SpEx-I_1p"
FT                 /translation="MFFVFESQIMEQDRRGTSRHRLETPERLPMRRDGTAE
FT                 RRSRSRSRLRSGTRPPRRSRARSGSRGITRQSARSQSIREKERELRREWDK
FT                 IRRLEDEIDRERSRLRSSSRTRRSSRHQSSVRNSEQRVEDRRGNREQSTAR
FT                 DNKRSASQAFSANDVMNILKSIKSTQSHTVALSSHNLNHKNILPDFDPSSK
FT                 NQRVDVWLKKVNECATVYGWDDKTVIHFAMQKLQGLAKTWYESLNSILFSW
FT                 SEWQDKLIAAFPYEQNYGQSLEDMLRRKSRPNEPIEVYFYEKIALLNQCDI
FT                 DGKRAVDCVIHGLSDKTLKTSALALRCLHTDQLLQFLMSNKDSGHSQVLYG
FT                 RGDLKNRFGQDSRAPGSGTSYDRTNTDIKKPNLVVNPGLFCYNCKERGHPF
FT                 MKCPKPLLKCLNCQRFGHKTENCISKSDGKKEAMPKTMLISASKASSKYMK
FT                 DVTINGLRFKAFIDFGSDVSLLAKSTVVLLGLVYDCRLQPLKGFGNEIVNS
FT                 YGTVIAKLAIDGVRAEVQFYVVDDKYLDTPVLVGQTFTEQPHVVVYKNSEQ
FT                 LKFSNFDFLMPFSDGNLGNTQDLTVTVLSAIDLYGPATITAVTKPQLNGDI
FT                 IISSKIVGKPTNQYYIYGGVYRVTSGVVKISIAPIADSIAHLTAGATLCRA
FT                 TKVLLVNRILSHNFEDFAIDSQNFDDELVRMGEGVTEGDKRKLMDILHRYK
FT                 HCFASSLKSLGCTNVTEMTIETTSRQPIVYRPYRLSHKEREQVREMVGEML
FT                 DAGIVRESVSEYASPVILVKKKDGKMRMCIDYRLLNAITVKERYPMPIIED
FT                 EIARLSGQAYFITLDLASGYYQVPISEASKALTAFVTPDGHYEFNRMPFGL
FT                 ANAPAVFQRMMHKVLGSARYTEATAYIDDVLIYGRDKEECLNRFENILKLI
FT                 EKANLTLNLSKCEFLTDRVHYLGYEISAAGIRPGDKKVSCVIDFPRPSNQH
FT                 TVRQFLGLVGYFRKFIRNFAQVAHPLNKLLRKDAPWCWADEQEESFKDLKD
FT                 RLTKRPILAIYDPKAETELHTDASKIGIGGILLQKPPNSDTYRPVAFYSRQ
FT                 TTPEEKHFHAYELETLAVVCSLKKFRVYLLGQNFRIITDCSALRSTFMKRD
FT                 IIPRVARWWLLLQEFQCSIEYRAGVRMSHVDALSRNPVSDSETIDALSQYP
FT                 AVMTISSDDWLRTLQLGDSELGRIKNIVSSEIDADGLKYIRDNYVIKDNQL
FT                 FKIIDGDKDNLRWVVPKGARWQLCRLNHDDIGHFGVEKTLERIKKSYWFPK
FT                 MSRFIKKYVQACIQCAYAKKTANAKEGYLHSIEKVEVPFHTVHIDHLGPFV
FT                 RSKRGNTHLLVIVEAFTKFVFIKSVRNTNSQNVIRALEDVFYMFRCPDRII
FT                 SDRGSCFTSHTFKRFCLDKGIKHVLNAVSSPRSNGQVERYNRSILNALTAQ
FT                 NLDNDERAWDEKVGVVQWGLNNTIQKTTGRTPAEVMFGTSMNAELVPKLND
FT                 VRRNTQEYSDVGEIREQVKDKIQAEQIKQKEYYDRNRKPARTYKEGDLVKI
FT                 TKVAFNNDGKSKKLLPSYSGPYRVTQVLGNERYRLAGIPGLTGTKSKRKTT
FT                 VAADRMLPWVHLAALEVNSDSGDENVNYSASESE"
XX
SQ   Sequence 6337 BP; 1939 A; 1160 C; 1443 G; 1795 T; 0 other;
     tttcagaagt ggtatgtacc tactcacatt ttattattta tttaagtaga tgtttttgtt        60
     attgcctgat ttttattatt aattaccttc acaaagtggt gtgagggacg aacataatgg       120
     ctgatcatgg ccgttattta tcctcatttt ctttgtttca tgacaaaata aatcgagtaa       180
     cggtttggtg taagttaaat taataatatt acaaatacag atatttgcct aaaatatcta       240
     cagctattac aattcaaaga tgttttgaca ccgtccatga gctatagcaa tcacacaagc       300
     ttttgtttag tctcagctgt ggtatgttta tcagtaaatg ttgctgatta atttaaatta       360
     ctttctggtt ttaattgatc taaagtttta catgcacgtc aatcgaatta cagtctaata       420
     tccttataac aaggatttga tctaactgaa atcggcggct gaatgatcga tggcgatgat       480
     gatgaatgag gactagttta atacgtattg acgtgtactt ttgacgataa atgttctttg       540
     tgtttgagtc ccagataatg gagcaagaca ggcgaggtac tagccgacac cggctcgaaa       600
     ctcctgagcg cctcccgatg agacgcgatg gcaccgctga gagacggagt cggagtcgaa       660
     gccgcttgcg tagcggcacc cgtccaccaa gacggagccg ggcgcgcagt gggagtcgcg       720
     gcatcacgcg ccaaagtgcc cgcagccaga gcattcgcga gaaggaacga gagctacggc       780
     gggagtggga caagataagg cgcctcgaag atgaaattga tcgagaacgc agccgtcttc       840
     gatccagttc gaggacacgt cgcagttcga ggcaccagag ttctgttcgc aattctgagc       900
     aacgagtaga agatcggcga ggcaaccggg agcagtctac tgctagggat aataaaaggt       960
     cagcaagcca agctttctct gctaacgacg ttatgaatat tttaaagtct attaagtcaa      1020
     cccaatcgca cacggtggca ctcagttccc ataatcttaa ccacaaaaat atactaccag      1080
     attttgatcc gtcatcgaaa aatcaaagag ttgatgtttg gttaaaaaaa gttaatgagt      1140
     gtgcaaccgt ctacggatgg gatgacaaaa cggtaataca ttttgcaatg caaaaattgc      1200
     agggattggc caaaacctgg tatgagagtc tgaactctat tctgtttagc tggtccgagt      1260
     ggcaagataa actaatcgcg gcgtttccct atgaacagaa ttatggccaa tccctggaag      1320
     atatgttacg gaggaagagt aggcctaatg agcccatcga agtttatttt tatgaaaaga      1380
     tagccttgtt gaaccagtgc gacattgacg gcaaacgtgc ggtcgattgt gtaattcacg      1440
     ggttgagcga taagacacta aaaaccagtg ctttggcatt acgttgtttg catacagatc      1500
     agctcctgca attccttatg agcaacaaag attctgggca ctcgcaagtg ctttacggtc      1560
     gcggagatct taaaaatcga ttcggacagg acagtagagc acccggtagc gggacttcat      1620
     atgatcgtac caacacagac ataaagaaac ctaacttagt agtcaatccc ggtctatttt      1680
     gctataattg taaagaacgt ggtcatccct tcatgaaatg tcccaagcct ctattaaaat      1740
     gcttaaactg ccaaagattt ggccataaaa ctgaaaattg tatttcaaaa tctgatggta      1800
     aaaaagaggc catgcctaaa accatgctta tatcggcttc aaaggctagt tcaaagtaca      1860
     tgaaggacgt tacaattaac gggttgcggt ttaaagcctt tatcgatttt ggtagcgacg      1920
     tttcgctgct agcaaaatca accgtggtgc tcctaggact tgtgtacgat tgcaggttgc      1980
     aaccattgaa gggttttggg aatgaaatag tgaattcgta tggcaccgtg atcgccaagc      2040
     tggctattga cggagtcagg gctgaggtcc aattttatgt agtagatgac aaatacttag      2100
     acactcctgt gttagtcggt cagacattta cggaacagcc gcatgtagtt gtatataaaa      2160
     actcagaaca actgaagttc tctaatttcg atttcctaat gccgttcagt gatggtaacc      2220
     ttgggaatac tcaagacctc acggttacag tattgtccgc aatagacctt tacggcccgg      2280
     ctacaataac cgctgtaacg aagccacaac ttaatggtga cattattata agtagcaaaa      2340
     tagtaggaaa gccaacgaac caatattaca tttatggcgg cgtttaccgt gtaacaagtg      2400
     gtgtggtcaa aattagtatt gcacccatcg ctgacagtat agcacattta acagcggggg      2460
     ctaccctatg tcgcgccaca aaagttcttt tagtaaatcg tatcttatct cataattttg      2520
     aagattttgc tattgattct caaaattttg atgacgaatt agtccgaatg ggtgaaggtg      2580
     ttaccgaagg tgacaaacgg aagttgatgg atattttgca cagatataaa cattgttttg      2640
     cttcatcctt aaaaagcttg ggatgtacaa atgttacgga gatgacaata gaaacaacaa      2700
     gtagacaacc cattgtttat cgtccatatc gcttgtcaca caaagaacgc gagcaggttc      2760
     gcgagatggt aggagaaatg ctagacgctg gcattgttag ggaatcggtg tcagagtatg      2820
     cgagccccgt cattctagtg aaaaagaaag atggaaagat gcggatgtgt attgactata      2880
     gattgcttaa tgcgattacg gtaaaagaaa ggtatccgat gccaataatc gaggatgaaa      2940
     tcgctcgact atctggtcag gcttatttca tcacacttga cttggcatcc gggtactatc      3000
     aagtaccaat ttccgaagca tcaaaagcac tgacggcgtt tgtaacgccg gacggccatt      3060
     atgagttcaa tcgtatgccg ttcggccttg caaacgcccc cgccgttttt cagcgtatga      3120
     tgcataaggt attgggatca gcacgataca ccgaagcaac tgcatacatc gatgacgttc      3180
     taatctatgg tagagataaa gaggaatgtt tgaaccggtt cgaaaatatc ttaaaactaa      3240
     tcgaaaaggc caatttaact ttaaacctgt ccaagtgcga atttctaact gatagagtgc      3300
     attatctcgg ttacgaaatt agtgccgcag gaatcagacc tggggataag aaagttagtt      3360
     gcgttattga ttttcctcgg ccgtccaacc agcatactgt caggcaattt ttagggctcg      3420
     tcggttattt tcgcaaattt ataaggaatt ttgcacaagt ggcccatccc ctaaataaat      3480
     tattgcggaa ggatgctcct tggtgttggg cggacgaaca ggaagaatca tttaaggatt      3540
     tgaaagatag gctgacaaaa cggcccatat tggctatata tgatccaaag gccgagaccg      3600
     aactccacac agacgctagc aaaattggta ttggaggcat tctgctgcaa aaaccaccaa      3660
     acagcgatac ataccgaccc gttgcgttct atagccgtca gaccacacca gaagaaaaac      3720
     atttccatgc ttacgagctc gaaactttgg cagtggtctg ttctttaaag aaattccgcg      3780
     tttaccttct cggtcaaaat tttaggatta ttactgactg cagcgcgttg cgcagcactt      3840
     ttatgaaacg cgacataatt ccgcgagtgg ctaggtggtg gttgttgctg caggaattcc      3900
     aatgctccat agaatacaga gctggcgtta ggatgtcaca tgtggatgca ctatctcgta      3960
     atccggtttc agatagtgaa actatcgatg cgttgagcca gtatccagca gttatgacca      4020
     ttagtagtga cgattggctt cgaaccttgc aattaggaga ctccgagcta ggtagaatta      4080
     aaaatatagt ttcctcggaa attgacgcag atggtttgaa atatattagg gacaattacg      4140
     tcattaaaga taaccaatta tttaagatta tcgatggcga caaagacaat cttcgctggg      4200
     ttgtaccgaa gggagcgagg tggcaactgt gtcggttaaa tcatgatgac atcggacact      4260
     ttggtgtgga aaagacccta gagcgaataa agaaatcata ttggttccct aaaatgtcta      4320
     gatttattaa aaaatacgtt caggcgtgca tacaatgtgc atatgcgaag aaaaccgcta      4380
     atgctaaaga aggatattta catagtatcg agaaggtcga ggttcctttc cacaccgtcc      4440
     atattgacca cctcgggccc ttcgtgagat ctaaacgcgg aaacacacat ttgctagtga      4500
     ttgtagaggc gttcacaaag ttcgtattca taaaatccgt tcggaatacg aacagtcaga      4560
     acgtcatacg tgcgttagaa gacgttttct atatgtttcg atgccctgac cgtatcatta      4620
     gtgaccgtgg gtcttgcttc acatcacata cctttaaaag gttttgctta gacaagggaa      4680
     ttaaacatgt tttaaatgcg gtatctagtc cacgctccaa cggacaggtt gagcgttaca      4740
     atcgatcaat attaaatgct ttaacagctc aaaacttaga taacgatgaa agggcatggg      4800
     atgagaaggt aggagttgtg caatggggct taaataacac tatacaaaag acgacaggga      4860
     gaaccccagc agaggtgatg ttcggcacgt ctatgaatgc agagttagtt ccaaaactca      4920
     atgacgtaag acgaaataca caggaatata gtgatgtagg agaaataaga gaacaggtta      4980
     aagataaaat acaagcggaa caaattaaac aaaaggaata ttatgataga aataggaaac      5040
     ctgcgcgaac ttataaggag ggagacttag ttaaaataac aaaggttgct tttaacaatg      5100
     acgggaaaag taagaagctt ttgccctcgt actctggacc gtacagagtt acacaggtgt      5160
     taggaaatga aagatacaga ttagcaggaa taccaggact gactggcact aagtctaagc      5220
     gtaaaactac ggtggcagcc gatcgcatgt tgccctgggt tcacttggcg gctcttgaag      5280
     ttaatagtga ttctggcgat gaaaatgtaa attattctgc ttcagaaagt gaatgatatt      5340
     acgctacctt gtaattgagt attaccgtaa ttgctagtat tctttttctt ataataccta      5400
     attaatcttt acaaatgtat tatttatgtt ctatgtttac aatagttaag atgaatacct      5460
     attattgaat gaatagtaaa atgtaagcgg aaatatataa agcttactaa tatataaaga      5520
     agctgtatac gtacgtaatt tgttacagtc gtgccagaat tggttgggtt ggcatgcatc      5580
     gtagcacttt acttacctgg ccctagtctc tgttccctct agaattggat gggtttgcgg      5640
     ggatagtgct agggttagtt agtcttgtta agtccactca tgtataagta aatgtattgt      5700
     gttatagtcg tgtcagaatt ggatgggttg gcacgcatta tagcacttta ctaacctgat      5760
     ctcagtcaga ttcccgctag aattggatgg gttagcgagg atcgtgctga ggttagctta      5820
     tcttgctaga attggatggg ttagcaagga ttaaacttac tcttgcgaga actggatggg      5880
     ttcgcaagtt aattaattaa cattatatcc tttttgtcgt aagaattgga tgggtttacg      5940
     acaaagtggt cggtgctcct gtaagaacgg gatggtttca caatatatga attgattttt      6000
     acggctgtta ttattattat tttttgttga cacttggata atagagatga agtaatctta      6060
     atataaacag ataaattgtt aataagaatt tacttattga gtatctttat atttgtatga      6120
     tgtatttttt tttcttctat ctttattgtt acattgaata attgcgtaga catacatgtt      6180
     ttgttaatgt tagcgttata agggaaattg tatttaaatt gtatacaaat atgatttagt      6240
     aaatgaaatt gtaagtgtcc accctcgccg agtgtaaggt tagcataatt cacccaggta      6300
     cgtgtatgag gacatacacg aggtcaggat ggacgag                               6337
//
ID   Gypsy-11_SpEx-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-268
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4140-4140 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 268 BP; 90 A; 29 C; 71 G; 78 T; 0 other;
     tgtaaggttc ctagtattaa ttacgttata caatacaaaa atcgactatt tcaataatcg        60
     atttttgtat cgatcttttg aaataataaa aatgagcggg aacgagtgaa cgagtgaggt       120
     gagggttgtc tgtggaaccg ggacgagagg gcgggaaaaa aagggagtgg atggatatac       180
     ggtttggcgg caagagatat aagggagatt agtcttgtaa cctgaacatt aaaggattat       240
     tttgtattat acgacgagtt ttattaca                                          268
//
ID   Gypsy-11_SpFr-I repbase;    DNA;    INV; 3989 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3989
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1834-1834 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..844
FT                 /product="Gypsy-11_SpFr-I_1p"
FT                 /translation="METLKEDRLTAETSRVGVRPPPFWPDDPEMWFAQMEC
FT                 QFALANVTVDLTKYYQVVSALEHRYATEVKDIITNPPAVNKYDKLKSELIK
FT                 RLSASRERKVKQLLMHEELGDRKPSQFLRHLRHLAGPSVPXDFLRTLWSNR
FT                 LPTNLQAVVASQPDLPLDKLADLADTVNEIAPAGPMQVASIAQSGTATLIK
FT                 EMAGQIAELTRQVSSLSTKVDNRSQVRGRSHSRSRSGNWRSRSKSRSRQPP
FT                 ENHPHCWYHFTHGGRARKCIQPCTWKSENSKGSPN"
FT   CDS           718..3963
FT                 /product="Gypsy-11_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VQVPSATRKPPALLVPLHAWWPGKEMHTALYMEVGKL
FT                 ERQPELAAYDCPLASGRLFVADRYSKMLFLVDTGSDLCVYPRSAIKTPCNI
FT                 TKFSLTAANGSIINTYGPVQLSLNLGLRRSFTWKFTIADVSKPIIGVDFLS
FT                 FYNLLIDCRNHRLIDGTTSLFVAASSQRVPDNVASVKTVTGETEFHQLLRE
FT                 FPEVTRPAGTVNPSKPKHNTVHFIKTTPGPPVANRPRRLDPERLKIAKKEF
FT                 EDMIASGTARRSESPWSSALHLVKKKDDGWRPCGDYRALNARTVPDRYPIR
FT                 HIQDFSQRLSGSTIFTKIDLIKAYNQIPVNEADIPKTAITTPFGLFEFPYM
FT                 TFGLRNAAQTFQRFIDEVLTGFDDFCFGFLDDILIYSSSXXQHRGHLRQLL
FT                 SRLQEYGVLINATKCVWGQPEVTFLGYQVSAAGTQPLSTKVQAIQDFPVPR
FT                 TVKELRRFLGMLNFYRRFIPNAAKSQAPLNSMLGGEKVKGSDPVQMSQLQL
FT                 EAFKECKSMLSNATLLAHPREQAELSILTDASDVSIGAVLQQRANETTQWE
FT                 PLAFFSKKLNQAQRKYSPYDRELLAVYEAIKYFRHMVEAREFVVFTDHRPL
FT                 TYAYKNARENCSPRQYRYFDYISQFTTDIRYIPGAENVVADTLSRVEEVTT
FT                 TIDYRALAQSQESDPELQSLLEKGSSLKLKKITLVGSDIDLYCDVSTQPPR
FT                 PYVTPELRNQVFDALHGLSHPGRTATVRLVTQRFVWPGIRKDCREWCRRCL
FT                 HCQRCKVTRHTSAPLSHFPLTSSRFCHIHLDIVGPLIPSSNYSYCLTIVDR
FT                 FTRWPEAIPLKDITADTCAAALVSGWISRFGCPSQITTDRGRQFESGLFKA
FT                 LTSLLGAHHYRTTAYHPASNGMVERLHRQLKAGIMCHNNTQWTEVLPIVLL
FT                 GIRSSWKDDVQASSAELVYGEPLRLPGQFLSPSSNHTVEDITSFATRLAKH
FT                 MADLSPRPTKWHRNKTFYIPKDMQHCTHVFLRQDYVRKSLEPPYAGPYKVL
FT                 KKTPKFYEVEVRGKSTNISLDRLKPAYVTQDSHTDSSTTDPIDLAPPNDLS
FT                 SPSTDEPVKTTRSGRRVRFPHCYRP"
XX
SQ   Sequence 3989 BP; 1082 A; 1082 C; 916 G; 904 T; 5 other;
     tattggtgac cccgacatgg aaacgctcaa agaagatcgt ttaacagctg aaacgtcgcg        60
     tgtaggcgtc cgtccgccgc cattttggcc tgacgacccg gaaatgtggt tcgcgcaaat       120
     ggagtgtcag ttcgcgttgg caaacgtgac agtggacctc accaaatact accaggtcgt       180
     atcggcgttg gaacatcgct acgccaccga ggtcaaggat attattacga acccgcctgc       240
     ggtaaacaaa tacgacaagc taaaatcgga acttataaaa cgattgtcag cctcgcgcga       300
     gcgcaaggtt aaacaattat tgatgcacga ggaactgggt gaccgtaagc catcacaatt       360
     cctacgtcat ttacggcacc tagccgggcc gtcagtgccg gamgactttc tgaggactct       420
     gtggtcgaac aggttaccaa ctaacctaca agctgttgta gcgtcgcaac cggatttacc       480
     gttggacaaa ttggcggatt tagcggacac ggtsaacgag atcgcgccgg cagggcccat       540
     gcaagtagca agcatagcac agtcaggtac agctaccctt ataaaagaaa tggcaggtca       600
     gatagcggaa ttaaccaggc aagtgagttc actatctact aaagtggata accgaagtca       660
     ggtacgtggt cgatctcatt cacggtctag aagtggtaac tggcgaagta gatctaagtc       720
     caggtcccgt cagccaccag aaaaccaccc gcattgttgg taccacttca cgcatggtgg       780
     ccgggcaagg aaatgcatac agccttgtac atggaagtcg gaaaactcga aaggcagccc       840
     gaattagcgg cctacgactg ccctttagca tcaggccgtc tttttgtcgc tgaccgttat       900
     tcaaaaatgt tatttcttgt cgatacgggc tcggatttgt gcgtttaccc tcggtcagca       960
     atcaagacgc cctgcaatat aacaaagttt agtttaacgg cagccaatgg aagtattata      1020
     aatacctacg gaccagtgca gcttagcctc aacctaggtc ttcgccgttc atttacatgg      1080
     aaatttacaa tagccgacgt ttctaagcca attataggtg tagattttct aagtttttat      1140
     aatctgctta tagattgccg caaccacagg ctcatagatg gcaccacctc actcttcgtg      1200
     gcagcatcct ctcaacgggt tcctgataac gtggcatctg tcaaaactgt caccggagag      1260
     accgagttcc accagctgct gcgtgagttc ccagaggtta cacgccccgc aggtactgtt      1320
     aatccaagca aacctaaaca taacaccgtg cattttataa agacgactcc cggaccgccc      1380
     gttgcaaaca gacctagacg cttggatcca gaamgattaa aaatcgccaa gaaggagttc      1440
     gaggacatga tagccagtgg aacagcaagg cgttccgaaa gtccatggtc ttcggctctg      1500
     cacctggtaa agaagaagga tgacgggtgg cgcccgtgtg gcgactaccg cgccctaaat      1560
     gcacgtactg tacctgaccg ctaccccata cgtcacatcc aggacttctc acagcgactt      1620
     tctggctcca ccatattcac aaaaattgat ttgattaagg catataacca gatacctgta      1680
     aatgaagcgg acataccaaa gacagccata acaacgccat ttggattgtt tgagttccct      1740
     tatatgacct ttggccttag gaatgcagct cagaccttcc aacgctttat cgacgaagta      1800
     cttaccggct ttgacgactt ttgctttgga tttctagacg atattttaat ttattcttct      1860
     tctscagasc agcacagagg gcacctgcgc cagctactat cgcgcctgca ggaatacggc      1920
     gtcctcatta acgcaacgaa atgtgtgtgg ggccagcccg aggttacctt cctaggatac      1980
     caggtatcag cagctggtac ccaacctctc agcacaaaag tccaggcaat acaggacttt      2040
     ccagttccgc gcacggtgaa ggagttacgg aggtttcttg gtatgttgaa cttttataga      2100
     agattcatac ccaacgctgc aaaaagtcaa gcacctctaa actcgatgct aggcggagaa      2160
     aaggtcaaag gctcagatcc agtacagatg tcgcagctcc agctggaagc attcaaagaa      2220
     tgcaaaagta tgctgtcaaa cgctacgctt cttgcacatc caagggaaca ggcagagctc      2280
     tctatactaa ctgacgcatc tgatgtttct ataggggcag ttctccaaca acgcgctaac      2340
     gagacaacac agtgggagcc actagcgttc ttctctaaga agctgaatca agctcaacgc      2400
     aaatacagcc cctacgaccg cgagctgctt gccgtctacg aggcgatcaa atatttccgg      2460
     cacatggtgg aagcccggga atttgtcgtc ttcaccgatc accggccact aacatatgcc      2520
     tacaagaatg cgagggagaa ttgctcgcca cgtcaataca ggtactttga ttacatatct      2580
     cagtttacta cagacattcg ctacatacca ggcgccgaga atgtcgtagc tgataccctg      2640
     tcacgtgtag aagaagtcac aacgacgatt gattacaggg ctttagccca atctcaagag      2700
     tcagaccccg agcttcagtc actattagaa aaaggatcgt cgctaaaact gaaaaagatt      2760
     actctagttg gctcggacat agatctctac tgtgacgttt ctactcaacc accaagacca      2820
     tacgtcacgc cagagctgcg taatcaagtg ttcgatgctc ttcacggtct gagccaccct      2880
     ggacgtacag ctaccgtgcg actggtcaca caaagatttg tgtggccagg gattcgtaag      2940
     gactgtagag agtggtgccg acgctgtctt cattgtcagc gctgtaaagt tacccgccac      3000
     acatccgctc ctctctccca ttttccttta acctcgtcga gattttgcca catccatctc      3060
     gacatcgtag ggccgctaat accatcttct aattacagtt attgcctcac catcgttgac      3120
     cggttcacac gatggcctga ggccatacct ctcaaggaca tcaccgccga cacctgcgcg      3180
     gccgccttgg tatccgggtg gatatcgagg ttcggttgcc cttcgcagat caccactgat      3240
     cgcggccggc agttcgagtc cggcctgttt aaggcgctaa catcactgct aggtgcccat      3300
     cactaccgca ccacagccta tcatcccgca tcaaatggaa tggtcgagag gttgcatcgg      3360
     cagctaaagg caggcatcat gtgccacaac aacacccagt ggacagaagt cttacctatc      3420
     gttctgctcg gcattcgcag ttcctggaag gatgacgtcc aagcatcttc agctgagttg      3480
     gtctacggtg agcccctacg cttaccaggc cagtttctgt cgccatcgag caaccacacc      3540
     gttgaagaca tcaccagctt cgctacacgt ctcgcaaaac acatggctga cttgtctccg      3600
     cgaccaacta agtggcacag aaacaaaacc ttctacatac cgaaggacat gcagcactgt      3660
     acccacgtat tcctaaggca agattacgtg cgcaagtctt tagaaccacc ctatgctggt      3720
     ccctacaagg tactaaagaa gactcctaag ttctatgaag ttgaggtaag gggcaagagc      3780
     accaacatat cacttgatcg cctgaaacca gcttatgtca cccaagacag tcacacggac      3840
     agctcaacca cagatccaat agacctcgca cctccaaacg acttgtcatc gccatcaacc      3900
     gacgagcctg tgaaaaccac acgaagcgga agaagagtac gcttccctca ctgctatcga      3960
     ccgtagtcac ggtctcgccg gggggctac                                        3989
//
ID   Gypsy-11_SpFr-LTR repbase;    DNA;    INV; 417 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-417
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1865-1865 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 417 BP; 89 A; 116 C; 84 G; 128 T; 0 other;
     tgtagcggca acaccgctaa acgatgaagc ttcccgagtg acgcaagcaa cgagatcgga        60
     gatcttcggg tatctccgcc gctccgcggg cgtcgttcgg aacacatcgg tttcgacgac       120
     gcccacgcgc cagtctattg ttcgccgctg cgcaaggcac tcacgcgctc gcttgcctcc       180
     gcaccgctaa acgcgcccca cgcgcccgca cgttatgtcg ctaataattg ttaatttcta       240
     tctaagtaac ttgttttttc gtttctcatc tagtttatat tcttacatca tcctaacttc       300
     attctaatgt gttttcgtgc ttgctatcgc ttgttctaac cgctttgttt actaattcaa       360
     aatataaccg attgttcgtg aactttggac ttttatttgg tggatacaat acctaca          417
//
ID   Gypsy-11_TCa-I repbase;    DNA;    INV; 5108 BP.
XX
AC   chrUn_5;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_TCa_;
KW   Gypsy-11_TCa-LTR; Gypsy-11_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5108
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_5; Positions   96663   91556.
XX
CC   'GTAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(222..1091,1095..4127)
FT                 /product="Gypsy-11_TCa-I_1p"
FT                 /translation="MSRASRSRGETPGRRRGPRGSEVTELSAALLQGMGQL
FT                 VQAATKGKVTNDATRQLVSIPPIANNVIAEFNPLTDNIIQWINAVDEFASM
FT                 YNWDDRTTSYLALQKLRGPAEVWYRGLPTRLFTWTEWRDMLSNNFRVKRDL
FT                 HSTLKKMMACEAKDESRLYEYVFEKLALIHATNLPMTDEDRVNLIMGGVRD
FT                 KNIKFAVETAGIKDPAELANHFKTLTKYKTSGNSSNSERAHYSSICFKCRK
FT                 SGHKAKDCWAKKNEHLGNDTGHPTRHTKQRALEYNVNYISPTENNFTSSLN
FT                 AKFFKNILINNVPIKCFIDFGSECSLISEFAVRTLALVPESLSGALLLTTL
FT                 SDTKVVVTSSVQVTVTIDQIKKTLNLLIVSQCVMNVEVLIGQDFTEQADVN
FT                 YIKAGSSLRFFPSKQIHTISHSVVNVGVTENETVQQLVTLLNTYSACIARN
FT                 MSEVGNISISQMKILLTTEKPIFQRPRRLADAERAEVRKIVDELMKQGIIR
FT                 ESNSPYASPVVLVTKKGGEKRLCVDYRALNKITVKDRYPLPLIEDCLRRLS
FT                 GYKYFTSLDLIAGYYQIQMSPESIQYTSFITQDGQYEFLRMPFGLCNAPAV
FT                 FQRVINTVLGQLRFTKVLVYLDDILIPAKSVEESFCVLKEVFNLLKHNGLT
FT                 LKLSKCNFLQTEIDYLGYKISANGIEPSCHKIQAVEKFPEPSNVHSIRQFL
FT                 GLTGYFRKFIKDYAIKSKPLTALLTKNADWEWGRKQLDSFTELKQCLTSRP
FT                 ILAIFDPSLEIRLYTDACRIGVAGILIQVKEKKEQVVAYFSRCTTPAEQNY
FT                 HSFELEALAVVASVKRFKQYLLGRHFTIFTDCAAVRGTFEKNEINQRVARW
FT                 VIELSQYIFEIKHKSGQQMRHVDALSRHLPGSQLAVHALKISNFDWLQTAQ
FT                 INDANIVQIKEQLETGERTNHPDVFNNYALKGGKVYRITTHGLRMVVPKFV
FT                 RFQLLKMAHDESGHFGPAKTYELLESHYWFPKMRHFVTKYCRSCLNCLYFK
FT                 SNSGKKPGLLHPIKKIPVPFHTVHLDHLGPFVNSSKKNAYVLVAIDAFTKF
FT                 ILLYAVKDTKSKNVIAAIKDLIKTFGVPHRVIADRGTAFSSKEFQQYVTEI
FT                 GSKLHLTAVAVPRANGQVERYNRTVLNSLATTGATQQDRHWDENLQNIQLG
FT                 INGTINNAIGVTPSEALMGYRVVTNGLLNSDNQATKDVTTIREQMVEKMEE
FT                 YQASQKQRFDAARCEGKHYSVGDLILLKITSNAPTGSSQKLLPKWRGPYRI
FT                 TKILGNDRYEVQNIPGLSRSRGTFISVAASENMRPWIQFG"
XX
SQ   Sequence 5108 BP; 1650 A; 968 C; 1096 G; 1394 T; 0 other;
     tcagaagtgg gattacgatc gtgaaaaaga cccggttata cttagtgata gtgtttaaac        60
     tacgaaaaat taagtgtaag taaagttaag tggaatatgg aagggacaga agaaacaggg       120
     ataacagtga acgtcggtat cgtcggtcag aaatcagaaa tacggatcgt ctacgaagtc       180
     ggtccacaag tagcgaggat caacgtcggt accgtaggtc gatgtcacgg gcatcgagat       240
     cacgtgggga aactccaggg cgccgacgag gaccccgtgg aagcgaagtg accgagctga       300
     gtgcggcact tttacaaggg atgggacagt tggtgcaggc ggctacgaaa ggtaaagtga       360
     cgaatgacgc tacccgccaa ctggtaagta ttccacctat tgcaaataat gtaattgcgg       420
     aatttaaccc gctgaccgat aatataatac aatggattaa tgcggtcgat gaatttgcgt       480
     ccatgtacaa ttgggatgac aggacaacca gctacctggc tctgcagaag ctgagaggtc       540
     ctgccgaggt atggtacaga ggcctgccca cccggttatt tacatggacg gaatggcgag       600
     atatgctatc aaataatttc agagtaaagc gcgatttaca ttcgactcta aaaaaaatga       660
     tggcatgcga agcaaaagac gaatcacggc tgtacgaata cgttttcgag aagcttgcac       720
     ttatacacgc tactaactta ccgatgacag atgaagatcg tgtaaattta ataatgggtg       780
     gagtgcgtga taaaaatata aaatttgcgg tggagacggc gggcataaaa gacccagctg       840
     agttggctaa tcattttaaa actctcacga aatacaaaac aagtggcaat tcctctaatt       900
     ctgaaagagc tcattattca agtatttgtt ttaagtgtcg aaaatcgggc cataaggcaa       960
     aagattgttg ggctaaaaaa aacgaacatc tgggcaatga caccggacac cccactcgac      1020
     acacgaaaca gcgcgccctt gaatataatg taaattatat cagtccaacc gaaaataatt      1080
     ttacatcttc atgactaaat gcaaaattct ttaaaaatat actaattaac aatgtcccaa      1140
     ttaaatgttt tattgatttt ggtagtgaat gctcactaat atctgaattt gctgtccgga      1200
     ctttagcatt ggtgcctgaa agtttgtcgg gagctttgtt gcttaccaca ctatctgaca      1260
     caaaagttgt tgttacttct agcgttcagg ttacagtcac aattgatcaa ataaaaaaaa      1320
     ctttgaattt gttaatagtc tctcagtgcg tgatgaacgt tgaagtctta atcggacaag      1380
     actttaccga gcaggcggac gtgaattaca tcaaggctgg tagttcgttg cgctttttcc      1440
     cttcaaaaca aatacacaca atatcgcact cggtggtcaa cgtaggcgtc accgaaaatg      1500
     aaacagtgca acaactggta acactattaa atacatattc tgcttgcatt gcaaggaata      1560
     tgtcggaggt cggaaatatc tcaatttcgc aaatgaaaat attactgacc acagaaaaac      1620
     ccatttttca acgacctcgc cgattggcgg atgcagaaag ggcagaggtt cgtaaaatcg      1680
     ttgatgaact aatgaaacaa ggtataatac gggaatctaa ttcaccgtat gcaagccctg      1740
     ttgttctagt tacaaaaaag ggaggtgaaa aacgcctgtg tgttgattac cgagccctca      1800
     ataaaataac cgtgaaggac cgttacccac tgccactcat tgaggattgt ttgcgtcgcc      1860
     tttccggata taaatatttt acaagtttag atctcatcgc aggctattat cagattcaaa      1920
     tgtctccaga atcaattcag tacacatctt ttatcactca ggatgggcaa tatgagttcc      1980
     tacgaatgcc attcgggctg tgcaatgcac cggcagtttt tcagcgtgtg attaacactg      2040
     tcctcggaca attacgtttt acaaaagttt tagtctatct ggacgatata ttaattccag      2100
     caaaaagtgt cgaagaatct ttttgtgtgt taaaagaagt tttcaattta ttaaaacata      2160
     acggactcac attaaaatta tcaaaatgca atttcttaca aacagagata gattatttag      2220
     gatacaaaat tagcgccaac ggcattgagc caagctgtca taaaatccaa gcagttgaaa      2280
     aatttccgga accatcgaat gtccactcaa tcagacaatt tcttggactg acagggtatt      2340
     ttagaaaatt tattaaagat tatgcaataa aatcaaaacc attaaccgct ttattaacca      2400
     aaaatgccga ctgggagtgg ggtagaaaac aacttgattc atttactgaa ttaaaacaat      2460
     gtttaacttc tcgccctatt ctagcaattt tcgatcctag tcttgaaatt cgactctata      2520
     cagacgcgtg ccgaatcggg gtggctggta ttttaattca agtgaaagaa aagaaagaac      2580
     aagttgtcgc atattttagc aggtgtacaa cccctgctga acaaaattat cactctttcg      2640
     aattggaggc attagctgtt gttgcatccg tcaaacgctt taaacaatac ttattgggac      2700
     gccattttac aatttttacg gattgtgccg cggtacgcgg aacgttcgag aaaaacgaaa      2760
     taaaccaaag ggtcgcaaga tgggtcattg aactgtcgca atatattttc gaaatcaaac      2820
     ataaaagcgg acaacaaatg cgccacgtcg atgcgttaag tagacattta ccgggtagcc      2880
     agctggcagt ccatgcgttg aagatttcaa attttgattg gcttcaaacg gcccagatta      2940
     acgacgctaa tatcgttcaa atcaaagagc agctagagac gggtgaacgt acaaatcatc      3000
     ccgacgtttt taacaactat gcgttaaagg gcggcaaggt atatcgaatt acaacacacg      3060
     gtttacgaat ggttgtccca aaatttgttc gatttcaact attaaaaatg gcacatgacg      3120
     aatctggaca ttttgggccc gcaaagacgt atgaattgct cgaaagtcac tactggttcc      3180
     ctaaaatgcg acactttgtt acaaaatatt gcagaagctg tttaaattgt ttatatttta      3240
     aaagtaattc cggcaagaaa ccaggtttac tacatcccat taaaaaaatt ccggttccat      3300
     ttcatactgt ccatctagat catttaggtc catttgttaa tagttcgaag aaaaatgctt      3360
     atgtccttgt tgcaattgac gcgtttacaa aatttatctt actttacgcg gttaaagaca      3420
     caaaatctaa aaatgttatc gccgccatca aagatttaat taaaactttc ggggtacccc      3480
     accgtgtcat agctgatcgt ggcacagcgt tctcgtccaa agagttccaa caatatgtca      3540
     cagaaattgg aagcaaactt cacttaacag cagtagccgt tccccgagca aacggacaag      3600
     ttgaacgata caacaggaca gttctaaatt cattggccac gacgggagct acgcaacaag      3660
     accgacattg ggacgagaat ttgcaaaata ttcaactggg aattaacggt accatcaaca      3720
     acgctatagg agtcacacct agtgaggctt tgatgggtta ccgagtagtt acaaacggat      3780
     tgttaaactc cgacaaccaa gcaaccaagg acgtaactac aattcgggaa caaatggtgg      3840
     agaagatgga agaataccag gcctcccaaa aacaacgatt tgatgcagcg agatgtgagg      3900
     gcaagcatta ttccgttggc gacctaattc tactcaagat aaccagtaat gcccctaccg      3960
     gaagcagcca gaaattatta cccaagtgga gaggacctta caggattaca aaaatcttag      4020
     gaaatgaccg ctacgaagtg caaaacatcc ctgggttgag ccgatctaga ggcacgttta      4080
     tcagcgtggc cgcttccgag aacatgaggc cttggattca atttggatag tcaagtaaga      4140
     ggtgagacgc taattgcaaa atactgcggg tcgcacatag acctgtgtct ttattttgct      4200
     ttgattagtt aaaatggtgg agcactgcgg gagtgggtaa acgtaataac tcctgtgtct      4260
     ttgctctatc cataaaggtt tatcacaatt cagaaattag aaattctagc tcctgtgtct      4320
     ttgcttcagc attgcgggag gttaaacaga agtaccattc ctgtgtcttt gctgatatgc      4380
     attgcgggag gctaaataaa aatactactc ctgtgtcttt gctaaaatgc attgcgggag      4440
     gtgagataag gacaccactc ctgtgtcttt gctgagatgc actgcgggag cagcgaggtt      4500
     tgtccaagtg ttcggggccc ctaaattaag taagttgcaa ttgcgaattt agcgtctagt      4560
     tttaagttgc ggatgcgaat ttagcgtcta gttttaagtt gcggatgcga attcagcgtc      4620
     tagttttaag ttgcgtttgc gaactgagcg tctagtttta agttaaggat gcgaataaag      4680
     cgtttagttt taagatgcgg ttgcggaatt aagcgtctta tttaaattac gttcataaag      4740
     atttaaggtt ttaaagtaag cgtctatgtt taagttacac caaaaaaaaa aaaaaaaaaa      4800
     gtttcgaatt aagcgtctag ttttaagttg tattcattaa aacttaaggt ttcagagtaa      4860
     gcgtaatctt agcttgtatc tattatcgcg tttagtttaa gtccaaataa ataatataat      4920
     atataatata tataataaaa taaactaata atgataatcc attcttagac caacaggccc      4980
     taccgttctg gcgtttatga gtaactgtgg attgcttctt aaattatcta aatcttggtt      5040
     gagtttcaga gacaaattgg ttattagagc aagtggagtg aggacactct ggatgtcagg      5100
     aaaggccg                                                               5108
//
ID   Gypsy-11_TCa-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   chrUn_5;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_TCa_;
KW   Gypsy-11_TCa-I; Gypsy-11_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-301
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_5; Positions   91555   91255.
XX
SQ   Sequence 301 BP; 91 A; 54 C; 75 G; 81 T; 0 other;
     tgttagaata gttcccaggg ttggagtctg gagtcttgga tcaatctttt aacaccggtg        60
     atacggcact taggattatc gcaaatgttt agaccaagag acagcccgga acgacttgct       120
     cgggatacga agtaccaagg gggcagaggg acggtatccc agatagcgag agaaaaatca       180
     gccgggggat atattgaatt aggccgtgta actgtacaca tgtgtccaat actaaattaa       240
     ataaacattg gtctgagcgt cttgaatttt tttttcaata atctgaatag cgtttctaac       300
     a                                                                       301
//
ID   Gypsy-11_TrNi-I repbase;    DNA;    INV; 5974 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5974
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 215-215 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1689
FT                 /product="Gypsy-11_TrNi-I_1p"
FT                 /note="gag."
FT                 /translation="MGTHPINFIHLRKAELEYEVLIRGGESGTCIELRKQI
FT                 NQLCKKYSSDDIQESGLDTREDLDAVELTLSEFQSSIVGINTEAGVSKAIS
FT                 YKNHIRYRLSRITPTNSELITRRKKLEATFTTATSQLADLETKYRSHNNTH
FT                 TAQHSEPTGSNITVTCTNHIPNKPKYDGRTCVRSFIQNLEEFQISKKIKAD
FT                 DMFNYAYEIFSDNALHWYRHIRPKVSSWLELTQLLKEAFDSDDYDYRLLTE
FT                 IRQRTQGDLENITVYISIMNGLFNRLNSRPTESEIFDIISHNLKPIYAEVL
FT                 AISNVQTLEQLEAVCKNYEKYKSRAAHYQEPSKSNLSSLAPEFAYIKTGTK
FT                 SFGTASNSNSYNYSRYSRGNFYKKATPTWEDHRPLKPISAVNTGDANSSQG
FT                 VTPFCPRCRSNSHSLRQCGAERFPICFKCGEKGVKFPDCTKCNRPKN"
FT   CDS           1677..4907
FT                 /product="Gypsy-11_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="PSKKLAGLDCRVGKTDYNKLSKAEWEDWLSFVSKFFN
FT                 CYSVSTIQKKPNNDTRPYAAILINHLPVCGLLDSGSAVTVIGRDYHKFLSK
FT                 ELGLTVQPVDSEQTFVAAGGQVLHSIGLLNLPITFEDKVQTIRAYVVPSID
FT                 SPILLGMDFWNAFQIFPKHIKSIFLINKSESNTQLNSKLHLHSFAQLSETQ
FT                 KVIANDIIKQFENISSTRKGLGRTTLITHCIDTGDSPPIRQRYYRMSPEKQ
FT                 RILGEELDEMLRLDVVEPCESPWSSPVLLTPKKDGKLRFCLDSRKLNAITK
FT                 KDAYNLPYISEILDNLRDAKYLSSIDLYKSFWQLPLQESDRNKTAFYIPGR
FT                 GTFRFKTTPFGLTNAPATQQRMVDKLFYGPEFENRVFAFLDDIVLVSSDFN
FT                 NHISLLTKVLNKLADANLTINMEKCKFFRDELKYLGYVVNAKGLQPDPEKV
FT                 EAILNFPVPTNPKEVKRFLGTASWYRRFVPNFSALAAPLNKLTSASKKAPP
FT                 FQWSQECDDSFKKLREILVTAPVLSCPDYSLPFEVHTDASNYGIGGLLTQT
FT                 KDGVEHPIAYMSKSLSKQEQNYSITERETLAVLLALEHWRCYLENGLKFTV
FT                 YTDHSALKWFLKLQNPSGRLARWGVRLSTFNFDIKHRRGVDNTLPDALSRA
FT                 FPVATLVDTGTSQSNPHTRTNDKWYLNIYHGCQQHPSSFPNYIVKDDRLFR
FT                 YVKSKFTLLGEFEWKEVIPSELRPRIIKENHAEPTAGHLGIYKTYKRLTLR
FT                 YYWPGMHRDVVEAVTSCDTCIAHKQANHAPLGLMGKPKECSRPFQMLSIDI
FT                 VGPLPVSRRQNAYLFVATCCFSKYCLLFPMRSANAKTICKLLEDNIFLVHG
FT                 VPQCVILDNGTQFTSYEMRNLFNKYKVPNVHYTPRYTPQINTVERYNKTII
FT                 TAISTLINDDQRSWDLQVPKVQFALNSSTSEVTGYTPAFLVFGRELIADGS
FT                 HYQNADVNEIIFQPRDQYAENLGVLSGVFDRVQSALLQAYSRNACSYNLRR
FT                 KKFEFDVGDIVWKRTYYLSDKDKYFSKKLAPKYVKCKVSGKHSPLVYDLVD
FT                 MQDKPLGTWHIKDLKGKDPR"
XX
SQ   Sequence 5974 BP; 1768 A; 1253 C; 1198 G; 1754 T; 1 other;
     gtggcgccca atctttactg gcacaggtac ttaggttgtc gcttggctgc atcgcagcgg        60
     tattatttaa attcaactat aatctaatat aataatttaa tttaatgaac ataatataat       120
     ctaacactat aatttattaa taattaatta aagattataa ttaatgttta actaagaatc       180
     aatactataa ttaattaatt aatctcaata attgttctta ttggttatcc ttataactga       240
     tactgtaatt atcaaaatat ttcattaatt ctgtaagtct gtgttgtaac actcaactgt       300
     gtaattggtt ataatctaat cagttccaat tgtttaacta ccactcattg gttcttgttg       360
     tataaaatgg gaactcaccc aatcaatttt attcacctaa gaaaagctga gcttgaatat       420
     gaggtactta ttaggggtgg agaatctggc acttgtatag aacttagaaa acaaataaat       480
     cagctatgta agaaatattc tagtgatgac attcaggagt ccggtttgga tacccgggag       540
     gatttagatg ctgtagaact taccttgtca gaatttcagt caagtatagt aggaattaat       600
     actgaggccg gagtatccaa ggccatatca tataagaacc acattaggta caggttatca       660
     cgtattacac caactaattc tgaacttatt acacgaagaa agaaactaga agctacattc       720
     accactgcca catcacagct cgctgatctt gaaaccaaat ataggtccca caacaacact       780
     cataccgctc aacattcaga gcctaccggc tccaacataa ctgttacttg caccaaccac       840
     attcctaata agccaaaata tgatggtagg acttgtgtac gctcttttat tcagaatcta       900
     gaggaatttc agattagtaa gaaaatcaag gcagatgaca tgtttaacta tgcctatgaa       960
     atcttttcgg acaatgcctt gcattggtac cgacatatta gacctaaggt tagctcgtgg      1020
     ttggaactta cacaactact aaaagaggcc ttcgactccg atgactatga ctacagattg      1080
     cttactgaaa taagacagcg tactcaagga gaccttgaga acataacagt atatatttcc      1140
     atcatgaacg gtctgtttaa taggttgaac tcaaggccaa ctgaatctga aatattcgat      1200
     attatctccc ataacttaaa accaatttat gcggaagttc tagcaatcag taatgtgcaa      1260
     actctggaac agctagaagc ggtttgcaaa aactacgaaa aatataaatc acgagctgcc      1320
     cattatcagg aaccctctaa atctaacctc tcctccttgg caccagagtt cgcatatatc      1380
     aagaccggaa ccaagtcttt tggcacggcc tctaattcta attcttataa ctacagtaga      1440
     tatagccgag gtaattttta taaaaaagct acccccactt gggaggacca tcggccactg      1500
     aagcctattt ctgcagttaa cacaggagat gctaactctt cacaaggggt tacccctttc      1560
     tgtcctcgtt gtagaagcaa ctcacactcg ctgcgtcagt gtggcgcaga acgttttcct      1620
     atttgtttca agtgtgggga gaagggggta aaattcccag actgtactaa atgtaaccgt      1680
     ccaaaaaact agctggcttg gattgtcgcg ttgggaaaac agattataat aaactgagta      1740
     aagcagagtg ggaagattgg ttatcctttg tttctaaatt tttcaattgc tactccgtct      1800
     cgacaatcca gaagaaacct aacaatgata ctagaccata tgcagctatt ctaataaatc      1860
     acctgcctgt ttgtggtttg ttggactctg gttctgcagt gacggtaata ggtagggatt      1920
     atcataagtt tttgtccaag gagctaggtc taaccgtgca acctgtggac agtgaacaga      1980
     catttgtcgc cgctggggga caagtattgc actctattgg cctcctaaat ttaccaatta      2040
     cattcgagga caaagtgcaa actatcaggg cttatgtggt tccttcaata gacagtccaa      2100
     ttttattggg catggatttt tggaacgctt tccagatatt tcctaaacac attaaatcta      2160
     tttttctcat aaataaaagc gaatctaaca cgcagcttaa ttctaaatta cacctacact      2220
     cgtttgccca gttatcagag acacagaaag taatagccaa tgatattatt aaacaatttg      2280
     aaaatatttc ttctaccagg aagggtttag gtcggaccac ccttataacc cactgcatcg      2340
     atacgggtga ctctccccca atccgtcaac gttattacag gatgtcccct gaaaaacagc      2400
     ggattctggg agaagagctt gatgagatgc tcaggttgga tgtagtcgag ccgtgcgaga      2460
     gcccatggtc ctctccagtc ttattaacac cgaagaagga cggcaaactt cgtttttgcc      2520
     ttgatagccg taagctaaat gccattacca agaaggatgc ttataatcta ccatacattt      2580
     ctgaaatact agacaatctg agagacgcta agtatctttc cagcattgac ttatacaaaa      2640
     gtttttggca actgcccctt caggaatctg ataggaataa aaccgccttc tatatacctg      2700
     gtcgtggaac gtttagattt aaaactacac ccttcggtct taccaatgca ccagcaactc      2760
     agcagagaat ggtagataag ttgttctatg gccccgagtt tgagaatagg gtctttgcat      2820
     tcttggatga cattgtcttg gtttcctctg atttcaataa tcacatctcc ctgctgacta      2880
     aagtactaaa taagctagcc gacgccaacc ttacaattaa catggaaaag tgcaaattct      2940
     tccgcgacga actgaaatac ttaggctatg tagttaatgc taaaggtctt caacctgacc      3000
     cggagaaggt cgaagctatt ctaaatttcc cggttcctac aaaccctaag gaagtcaaaa      3060
     gattcttggg cacagcctcg tggtacagac ggtttgttcc caattttagc gcattagcag      3120
     ccccgcttaa taaattaacc agtgctagta aaaaagcccc gccttttcaa tggtctcagg      3180
     agtgcgatga ttcttttaaa aagcttagag aaattctagt aaccgcacca gttttatctt      3240
     gtccggacta cagtttacca ttcgaagtcc acacagatgc tagcaactat ggtataggtg      3300
     gcttattgac gcagacaaag gacggggtcg aacatcctat agcttacatg agcaaatccc      3360
     tgtctaaaca ggaacaaaac tatagcatta ccgaaagaga aactcttgct gttctcctgg      3420
     ctttggaaca ttggcgttgt tatcttgaaa acggtttgaa attcactgtc tacactgatc      3480
     actcggctct aaaatggttt ctgaagctac agaacccatc cggccgcttg gcacggtggg      3540
     gggttagact ttcaactttc aactttgaca ttaaacaccg tcgtggtgtg gacaatactc      3600
     ttccagatgc cttatcccgg gcgtttcctg tggccacctt ggtagacacg ggcacttctc      3660
     agtcaaaccc acatacacgg acaaatgaca agtggtactt gaatatatat cacggttgtc      3720
     aacaacaccc gtcgtcgttt ccgaactata tagttaagga cgacaggtta tttcgatatg      3780
     tcaaaagcaa atttacatta ttaggtgagt ttgaatggaa ggaagtgatt ccgtcggaat      3840
     taaggccgcg catcattaag gagaaccatg ctgaacctac agcggggcat cttggcatct      3900
     acaagactta taagagactg accctacgtt actattggcc cggtatgcat agggacgttg      3960
     tggaagcggt aacctcgtgc gacacgtgta ttgctcacaa acaagctaat cacgccccac      4020
     taggcctaat gggtaaacca aaggagtgtt cacgtccctt tcagatgttg agcatcgaca      4080
     tcgtcggccc gctgcctgtc tctaggcgac aaaatgcata cctctttgtg gcaacttgct      4140
     gtttctctaa gtactgtcta ttgtttccta tgaggagtgc taacgctaaa actatctgca      4200
     aacttttaga ggacaatata ttcttggtac atggtgtccc acagtgcgtt atcttggata      4260
     atggaacaca attcacatcc tatgagatga ggaatttgtt caataaatac aaggtaccta      4320
     atgtgcatta cacccctaga tacaccccac agataaacac tgtggaacgc tataataaaa      4380
     caataataac agctatttct accctcataa atgatgatca acgctcttgg gacctacaag      4440
     tacccaaggt gcaatttgca ttaaacagct caactagtga ggtgacgggt tataccccag      4500
     cattcttagt gtttggtagg gaattgattg ctgacggttc tcattaccaa aatgcagatg      4560
     tgaatgaaat tattttccag ccgagggatc agtatgcaga aaacttaggg gttttgtctg      4620
     gtgtctttga ccgagttcag tctgcattgc ttcaggccta ttcaagaaat gcttgtagtt      4680
     acaacttaag gcggaagaaa tttgaatttg atgtgggtga tatagtgtgg aaacgtactt      4740
     actacttaag cgataaggat aaatattttt caaaaaaact ggctcccaaa tatgtcaagt      4800
     gtaaggtttc cggtaagcat tcacctctgg tatatgattt ggtggatatg caggataaac      4860
     cattaggtac ttggcacatt aaggacctaa aagggaagga ccctcggtag tcccgcaggc      4920
     ctagctaggc tagtgtagct cacaattgtg ttgcaacgat gccaagggac taccaccttc      4980
     acatgccttg aaggccgccc tacgcccatg gttatgagcg catagccctg ttttccagac      5040
     ccagtgaacc cacctaattt aactaaccaa cccgcactag ctagttttcc ctctttgttc      5100
     tctataggtt gtatcgggcg gactgatggt aggctttgag tgtcctgatt gctggtgtct      5160
     ctgcagagcc tgatgtctgg gtagttctac aagtaccact ccttaagcaa atcggttggt      5220
     ggagcaatgt ctacaccaac actataccta ataaatgtac tgtgtcactg ttatactttt      5280
     gttggcgtcg ccatggggaa tactgtgggc ctcagggggt gtctattatt tattgcagag      5340
     taggtccctg tggtgactac cattaaacct tgtgttgtcc aaacgttatt tcttttaaga      5400
     aatatttcaa gtcggtccct ggaatcaggt gcccgcaccg aatattattt attttattta      5460
     tttattctaa ctggcgttgt ccttgcgaat gctgtggatc ttgagggatg atattttttt      5520
     tgcagagcag gtctcaagga caactaccct taaaacttat atttatctaa ttgttaccat      5580
     aatactaatt atgtttaact actataataa accttattat ttaaaaatca attggctgaa      5640
     agctgatggt tgttgcatgt atcctagtta ttgaaaatta attaaggtat ttttcgtgcc      5700
     cttgtatctc ttctactgga acccttcggg tcacactatg acacgtcata cttacactta      5760
     cactgcagac tcaaactcca ccctattcac tttatccact ggttatkact ttgttcaccg      5820
     aatagggaca ggggaatgat aattagctta attaagcatg atgttgctgt agtttaaatg      5880
     gagggcagcg gtcagtccct atatagttgg tgatcgagcg gtgagattct agcggatttt      5940
     gttgagcaaa atcctttttt tgcggggggg gtac                                  5974
//
ID   Gypsy-11_TrNi-LTR repbase;    DNA;    INV; 1090 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-1090
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 169-169 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1090 BP; 206 A; 358 C; 247 G; 279 T; 0 other;
     tgtaacgtcg cgtctatggc caacttacta attgtccatg gacgcggcgg cagtggtcca        60
     ccctagtgcc taaacgtcaa gatgtgagag gctacgtgac attccctctc gatcgccata       120
     actggcggct gctgccacga ctcctaaggt gtaattatac cccaatcttg ggtgagtttc       180
     tatgtatatt gctaaactaa gtgtgtgccg tgtacgggat aacctacttc atattaattt       240
     tcacatattt aatcccattc tgcttgttct gtttcgcttg ccttggccga ccacgcggtc       300
     ttaggttatc ccatgcatgc gggctgcatt gcccttgttc tcaatagtgt taagtgaata       360
     ctcagtgtgc cttcagctgt tactagcctc ctgccacccc tttaaaggct aaaatgagct       420
     ctggatagtg taagcacttt attgcatcag ccttgagcac gtgtcattgc acccatctgc       480
     cttgtaaacc gctgcgatgt gtgagctttc cctttccctg cctctgtgct gccctgggga       540
     ccactagggg agcatccaca tcgcatgcgg gccaacatct tcggcaccgc taacctacgc       600
     acctctatgc acgcttccag gggtcaccct acgggttacc gccgtcccac taccttctgc       660
     gggtcccgct ctccagccgg cggctaagca cctactggtg gccgcggccg ttgtcacgcc       720
     agcgacccca gcttctgggc agcttcagcc agctcccggg ccgctcatcc agcttccgtg       780
     ccgctcagcc agcctctgcc cgctcaccgg gccgctcagc catcttcagc cagcttccgt       840
     gcagcttcag ccagcttccg tgcagcttca gccagcttca gccagctcac cgggcaccct       900
     acgtggaccc cccagggacg gtaccccctc actcatataa aagcgaggac ttaattacct       960
     gtgccacaaa cccgcgacct agccggacct agttccatta aagacctttt tggagatcta      1020
     cctctggttt tctttctccc taattggtta acggtccgca cagcctacct gtgcggccct      1080
     caccgttaca                                                             1090
//
ID   Gypsy-11_TrVa-I repbase;    DNA;    INV; 10102 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-10102
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 256-256 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1807..2334
FT                 /product="Gypsy-11_TrVa-I_1p"
FT                 /note="SGNH_hydrolase."
FT                 /translation="MADLVFLGASNFERLSKANFFRVHFAHRIVANLAKSG
FT                 ATVFDGQHILERFIDDTHLDLSSVTIVILLGINDLKQGLKFNVESFKKIIF
FT                 LSRKYFQTVVICKIPPCPKFKSSDISYCNQYLNNFHTASKVRVIDLFTPLL
FT                 NEPNYWVKKYYSGKKDGVHWNRAGHHKIVELFLTLGI"
FT   CDS           2405..4105
FT                 /product="Gypsy-11_TrVa-I_2p"
FT                 /note="zinc finger."
FT                 /translation="MASNQRISPCLLLVDQVKYELKVRGVKVEDSDNANIQ
FT                 RTNLSKAFDQGLPPLPDCIAKVITDPEAELNYCHQLEQTLIQKIDEYKEDN
FT                 ANGSSRQIIARLKHVSGRLVNLFKLKGIDSEARKVAQEQYSSLQKTLSLFE
FT                 EHLKADPDKTVVEEAKDANLNTFVPSHTSSPQSQPPSFQPVSVRRDSSVAE
FT                 QVARIESGIRAVGIAPDHRSVPEGVFQTQIQPPAVAQIPISDETPIISSPQ
FT                 YFKMFGKLTHPLDRLLKSLKETDGLDAQKLLSFLKTMFELKSQPSISERLA
FT                 MELVCPYTTGPLRHRLINALNQNYSFNNFHEDVLNFLIPDRLRVRLRLQYF
FT                 DRFQRDDEPLSTFISEIKMAAKILRLGLSDGTIIDTVLTNITPDERARLTF
FT                 EPRPTTLIELETLCVRSQNIRYAETERLQARKNYYQRPNYQQFDRGDVAGN
FT                 SAVNNPNNQFPRLAPGSSSLALPPPNPGAVQANPPVSKNEKESFNSQAAMR
FT                 GSYSAPAFNPQNVGQRPGCFRCGSSAHFKRECPMNTTIGNPSAMCCPDESD
FT                 GAHGSSDFLAPNMSKNLDVE"
FT   CDS           4012..7332
FT                 /product="Gypsy-11_TrVa-I_3p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SICDVLSRRIGRCSWQFRFLSSKYVKKLGRRVRRQGA
FT                 ISLQKINKKLNIGQVAEKVMAIHNSSLPCVKVNFKSLEISALIDTGASRCV
FT                 MSQKIFDKISNSIIKKIQPVSMEIGTAMRDQKMIVLKTAWIQFKVNKFSWV
FT                 QPFLVVPDLSLDLILGVDFIQRSGLVIDLSQSHVFFKFNQDIKIKTTQYSV
FT                 GRKIKRPTLNDSISPTLEPTNSATDLSHLSPQQASRVNSILIKYPHVLTKK
FT                 LGLTTLIQYEIQLTDQTTIRIPPYPMAPPKMNICRELVQKLLDEKVIEPSV
FT                 SDYSSPCFPVPKPNGSHRLVIDYRKLNQKVKFESVPVPDIKTAFSWFGEAR
FT                 YFCCIDLNQAYHQIGLKPESKRYTAFATPWNLFQYTRVPFGISVGGCVLTR
FT                 LIDMIFHDMKYKSVVNYLDDLVVFAKTFDEMMELLDEVLSRLGRAGLTVNP
FT                 EKTRIAVREIGYLGHKISYRSLKLDPARTQTIREFPKPSSPKAISRFLGMV
FT                 GYFSKFIPDYAKWAVPLNALRRKNVQFIWGKEEQSAFEHLKEAISNPPVLL
FT                 IPDFEKQFILQTDASAKAVGGVLLQEIEGVRRPVGFFSHKLSEQEQKYSTY
FT                 ELECLGAILGMEHYRPFLEHTEFVLETDNMALSWLLSHPRQLGRIGRWVIR
FT                 INSFKFQAVHIRGTQNVVADCLSRMFEDVLPLEAVAQESSEVLLCNAILPN
FT                 LTEFPLAFTSLEEHQKNDDDLNIVRQKILNGEPVPGYSLCKGLLCYSQSQA
FT                 GQRKIVLPSKLIPMIFTFYHESTIGGHQGYFKTANKIKQLFYYKNLLEDVK
FT                 TRTAACETCARSKPVQRVTAGPLSSNISTEPMERLFIDFVGPLVRTQRGNR
FT                 FILVVTDAFSKFVWLLPTSAATSVLVIKELKQIFQSFGLPKFIVSDNAKCF
FT                 VAHNLKHWFFNLGIKHITTTPYYPNPNHSERVNRNLKNALIAYHSDSQTSW
FT                 DTSLFWLQQAFNYARHEAHKFTPHQLFFTYEPNTPLALQWSITDLLPDNVD
FT                 AAEVKENLNRARKNLMASHKRLKTRYNAKVKAHSFKIDDLVFLKQHPQSSK
FT                 IDKRMAKLMPRYDGPYKIVRFTTPVSVILLHLRSQKETRAHVSQLKPFKG"
XX
SQ   Sequence 10102 BP; 2963 A; 1911 C; 2047 G; 3181 T; 0 other;
     aaaaatggta ccagagtagc gtggttctat ggggttcagg gattgagatt gccgatcgcc        60
     ccgggattcc tcgttgctcg gccggtttcg acttgtcgag atcggaggaa ggatgaaagt       120
     tttgttgatt gaatcgtgtt attgttttaa agttatattt tccccagttt cccaggttcc       180
     cagtttcgtg attgtcgcgg gtgatcattc aatgggattg aattgatcta gggcgaaatc       240
     cggtgtaaag tttaaagtcc ccagttaaag tttcccaggt taaagttaaa gtttccccag       300
     ttttcccagg ttcccagttt cgtgattccg cgggtgacaa ttcaagggga ttgaattggt       360
     ctagggcgga atccggtgaa aaagtttccc agtttcaagt gctcccaggt ttttttttta       420
     tcagtcaagt ccccagtgta atttgtgtat tttacgtgaa tcaaaatgtg tttcgcgagt       480
     ggagggaggt ccgctgctgc gaagtggaga gacgaccgag atggattcgc cttcggggag       540
     gggaggcccc tagcctgtag attcggataa gttatcactt tgtatcaccc tcttttatta       600
     tcgctctcgt ttcttttatc atttgatttt gtgttgattg ttttgatttt cgttttcttc       660
     gccggcggat cgttttagcg accgcgccgc gagtgaattt cgctcgcgac gcctttgcta       720
     cggcgatcgg tcgacgaagg ggccgtattt ttaattacgt tcaaagtttt gatgtatttt       780
     gttgagacca aagttttttt attccgaaat tgtttcaaat ctggtgggtt cggcgtcgcg       840
     tgtcgtttgg cgggcggcgg aaccttagca aatttccttt gtttcggcct gccgttcgcg       900
     gatcgacacg cggagtcgaa ttctcaacca agtaggtaca gattattatt tatgtgtcga       960
     tcattgtgcg tttaatttaa aaaggagaca cgtactagat ttttattgat tttgacaaat      1020
     tgacaaaaaa aaaaaaaaaa aaaaaaaaaa attctattct tcaaaggctt ttgtattttc      1080
     agatttagtt tttttccccc acctattgcc cgcctttcaa aaaaacaact ttctaattat      1140
     ctaatgtgtg aattgacagg ttccccccac tgacgatttt cgtggtgttg tcctctgctc      1200
     actattatat cttcctgttt gatgctgact ctgatggtgg tgccgtcgat gccgaagacc      1260
     ctccacactc tctttttgct ctagacgagc cgtcgtctcc ctaattcatc tccgaattag      1320
     cgaagcccgg tgagttgttt ccttttcgga gcttaatttc tctctcattg ctgaaattta      1380
     atcatttttt gactttccag gcgatttttt ttggatcctt cagtgatctc ttttaattaa      1440
     cttcaattaa aatgatttgt tatctgatcc gtgcattttg tctttttcat gtaccaatgg      1500
     tgatcctgat tggctgaccg agaatacagt aatcgctgga aagggagttt tcttcgcatc      1560
     gctgcatctc attcgaccgg aaaaaccaac gattccaacg tatcgactta catcgaaatt      1620
     ttgacatcac aatcatcatc gttccatcgt caaacgttac aatttgaaag tcatcgattc      1680
     gtgagttttt agaatttgaa tgtctcaatt tatttggaaa ataattgttt attagccccc      1740
     ccccctccta ctcttttctt tcagctctta tttagataaa aaaaaacata agttgttatt      1800
     ttttatatgg cagatttggt gttcttaggt gcaagtaact ttgaaagatt atcaaaggca      1860
     aattttttca gagtacattt tgctcataga atagtagcca accttgctaa gtcaggcgct      1920
     actgtatttg atgggcaaca catccttgaa cgtttcatcg acgatactca tttagattta      1980
     tcttcggtta cgattgttat cttattaggt attaatgatc ttaaacaggg tttgaaattt      2040
     aatgtcgaat ctttcaaaaa gataattttc ttgtctagga aatattttca gactgtggtc      2100
     atttgtaaaa ttccaccatg tcctaaattc aaatcttctg atatttctta ctgtaatcag      2160
     tacttgaata attttcatac cgcttctaaa gttagagtta tagatctttt tactccttta      2220
     ttaaatgagc ctaattattg ggtaaagaaa tattactccg gtaaaaagga cggagtccac      2280
     tggaatagag ccggacatca taaaatagtg gaattattct taacgttggg aatttaaatg      2340
     taatcatttt tcttctttga ataacctgaa tagataacaa ttgaccgtta gaaagtgagg      2400
     taaaatggct tctaaccaga gaatatcacc atgtttacta ctggtagacc aagtaaaata      2460
     tgaattaaag gtccggggag taaaagttga agactccgat aatgcaaata tccaacgaac      2520
     aaatctcagt aaggcttttg atcagggact acccccactg cctgattgta ttgccaaagt      2580
     aattacagat cctgaggcag agttaaatta ctgccatcag ttagagcaaa ccctaattca      2640
     gaaaatcgat gagtacaagg aagacaacgc aaatggaagc tcgaggcaga tcatcgctcg      2700
     actaaaacat gtgtcaggtc gattagtaaa cttgtttaaa ctgaagggga ttgattctga      2760
     ggcgagaaag gtggctcagg agcaatattc gtctcttcaa aaaacattaa gcctcttcga      2820
     ggaacattta aaagcggatc cagataagac agtcgttgag gaagcgaaag acgcaaattt      2880
     aaatacattt gtacctagtc acacttcctc gccccagagt caaccaccca gtttccaacc      2940
     agtttcagtg cgtcgagatt cctcagtagc tgaacaggta gcacgaattg aaagtgggat      3000
     cagagcggtg gggatagccc ctgatcatag gagtgtgcct gagggagttt tccaaaccca      3060
     aatccaacca cccgctgtgg ctcaaattcc gattagcgac gaaactccaa taatcagttc      3120
     acctcaatat ttcaaaatgt ttggtaaatt aacccaccca ttagacaggc ttcttaaaag      3180
     tttgaaggag accgatgggt tggatgcaca aaaattatta agtttcttaa aaacaatgtt      3240
     tgaattgaaa tcacaaccat ctattagtga gaggttggcg atggaactcg tatgcccata      3300
     taccacaggt cctctaagac accgtttaat taatgctctt aaccaaaatt actcgtttaa      3360
     taactttcat gaagatgtat taaactttct cataccagat agactgagag tccgtttaag      3420
     gttgcaatac tttgataggt ttcaacggga tgatgaacca ttgtctactt tcatcagtga      3480
     aattaaaatg gcggcaaaga tcttgcggct ggggcttagc gatggtacta ttatcgacac      3540
     tgtcctcacc aatatcaccc ccgatgaaag agcccggtta acttttgaac cgcgaccaac      3600
     aacgctaatt gaattagaaa cactgtgtgt gcgatcccag aatattagat atgcagaaac      3660
     agagaggctt caggccagaa agaattacta ccagagacca aattatcaac aatttgatag      3720
     gggtgatgtt gctgggaaca gtgccgtaaa taatcctaat aatcagtttc ctcgtttggc      3780
     cccaggctca agttctttgg cccttcctcc accaaatcct ggtgcggtgc aagccaaccc      3840
     accggtctct aaaaacgaaa aagagtcttt taattcacaa gcagccatgc ggggcagtta      3900
     ttcggcgccc gcgtttaacc cccaaaacgt aggtcaaaga ccaggttgct tcagatgtgg      3960
     atcctcggcc cattttaaga gagaatgccc aatgaacact acaatcggta atccatctgc      4020
     gatgtgttgt ccagacgaat cggacggtgc tcatggcagt tccgatttct tagctccaaa      4080
     tatgtcaaaa aacttggacg tcgagtgagg cgccaaggtg cgatctcact ccaaaaaatt      4140
     aataaaaaac taaatatagg acaagttgcc gagaaagtca tggccatcca taattcatct      4200
     ttgccttgtg tgaaagtaaa tttcaaatca ctggaaatct cagcgttgat agacactgga      4260
     gctagtcggt gcgtcatgtc acagaaaatt tttgataaaa tatccaatag catcataaag      4320
     aaaattcagc cagtgagcat ggagattgga actgccatga gggaccagaa gatgatcgtt      4380
     cttaaaacgg cctggatcca gtttaaagta aataagtttt catgggtgca accttttctt      4440
     gttgtacctg atttgagcct tgatttgatt ttaggagttg atttcattca aaggtcgggt      4500
     ctagtaatag accttagcca atcacacgtg ttctttaaat tcaatcaaga catcaaaatc      4560
     aaaactaccc aatattcagt tggacgtaaa atcaaacgcc ccactcttaa cgattctatc      4620
     tctccaacct tagaaccgac taacagtgca actgatcttt cacatttgtc gccacaacaa      4680
     gcgtcaagag taaacagtat attaatcaag tatccgcacg ttttgacaaa gaaattaggt      4740
     ctaacaaccc tgattcagta cgaaatacaa ttaacagatc agacaaccat taggataccc      4800
     ccgtatccaa tggccccacc aaaaatgaat atatgcaggg aacttgttca aaagttgtta      4860
     gatgagaagg taattgaacc gtctgtttcg gattactcat cgccctgttt tcctgtccca      4920
     aaaccaaatg gtagccaccg tttagtaata gattaccgaa agttaaacca aaaggttaag      4980
     tttgagtccg taccagtacc tgacataaaa acagcgtttt cgtggtttgg cgaggcgcgg      5040
     tatttctgtt gtattgactt aaaccaagca tatcatcaaa ttggactaaa gccagaatcc      5100
     aaaagatata ccgcctttgc cacaccatgg aacctttttc agtatactag agttcccttt      5160
     ggaatcagtg tcgggggctg tgttctgact agacttatag acatgatctt tcacgatatg      5220
     aaatacaaat ctgttgttaa ttacttagac gatttagtcg tattcgccaa gacatttgac      5280
     gaaatgatgg aactgttaga cgaagttttg tcgaggctcg gccgtgccgg attaacggta      5340
     aatccggaga aaacccgaat agctgtgcga gagattggtt atcttggtca caaaatttct      5400
     tatagatcac ttaaattgga cccagctcgg acacagacta tacgggagtt ccccaaacct      5460
     tcgtcaccga aggcgatttc ccgtttcctc ggcatggtcg ggtatttctc gaagttcatt      5520
     cctgattacg ctaagtgggc agtaccactc aacgctctgc gtcgcaaaaa tgtccaattc      5580
     atttggggta aggaggagca gtctgctttc gagcatctca aagaagcaat ttcaaatcca      5640
     ccagtcttgc ttattcctga tttcgaaaaa caatttatat tgcaaactga cgctagcgcc      5700
     aaggctgtgg gaggagtact attgcaagaa attgagggtg ttcgaaggcc ggttggtttc      5760
     ttttctcata aattatcaga acaagagcaa aaatacagta catatgaatt agagtgctta      5820
     ggtgccatat taggcatgga acactatcgc ccgttcttag aacacacaga atttgtcctt      5880
     gaaactgaca acatggcgtt gagttggtta ctgtcgcacc cgcgacaact gggccgaata      5940
     gggcgatggg tgatccgaat caattctttt aaatttcaag ccgtacacat cagggggacc      6000
     caaaacgtgg tcgccgattg cctgtcccgc atgttcgagg atgtgttgcc acttgaagct      6060
     gtagcacagg aaagctcgga ggtgcttctc tgcaacgcta tcttaccaaa tttaacggag      6120
     tttcctttag catttactag tttggaggaa catcaaaaga atgatgatga tttgaacata      6180
     gtgcgtcaaa aaattttgaa cggagagccg gtccccggtt actctctctg caaaggtttg      6240
     ctatgttact cacaatcgca ggccggtcag agaaaaattg tcttaccttc caagttgata      6300
     ccgatgattt ttacctttta ccatgaaagt acaattggtg gccaccaagg atattttaaa      6360
     acagctaata aaatcaaaca gcttttctat tataaaaatc ttttggaaga tgtcaaaact      6420
     cggaccgctg cctgtgagac gtgtgcacgc agcaagccgg tgcagagagt gaccgcgggt      6480
     cccctcagca gtaacatctc aactgagcct atggaaagat tattcatcga ttttgttgga      6540
     cctttggtta gaactcagcg cggaaatcgt ttcattcttg tggttactga tgcgttttca      6600
     aaatttgtat ggctattacc aacatctgcc gcaacgagcg tgttagtgat caaggaattg      6660
     aaacaaatct tccaaagctt tggtctgcca aagtttattg ttagcgacaa tgctaaatgc      6720
     ttcgtagctc ataacctaaa gcattggttt tttaatttag gcatcaaaca tataacaact      6780
     acaccttatt atcctaatcc gaaccatagt gaaagagtga acaggaatct taaaaatgct      6840
     ctaatcgcgt accacagtga ttcacaaacg tcgtgggaca cgagtttatt ttggttacag      6900
     caagctttta actatgcaag gcatgaggcg cataaattta ccccacacca gttatttttc      6960
     acttatgaac ctaatactcc attagcgttg cagtggagca ttaccgacct acttcctgat      7020
     aacgtagacg cagctgaggt caaagaaaat ttaaatagag cgcgtaaaaa tcttatggca      7080
     agccataaaa ggctaaagac gaggtacaat gcgaaggtga aggcccactc atttaaaata      7140
     gatgacctag tttttcttaa acaacatcct cagagtagta aaatagataa acgaatggcc      7200
     aagttaatgc ctcgatacga tggaccatat aagatagtta gatttacaac accagtatct      7260
     gtcatattgt tacacctgag aagtcaaaaa gaaactaggg cccatgtatc tcaactcaaa      7320
     ccatttaaag gctagccaaa gaaaatttag taaaattata accgtaaaat ttaaaaaaaa      7380
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa ataaaaacca gaacatctta      7440
     cttgcgtggg agggcgccgc ggtgtgccta tcgcccggac ttcgtgagag gatgaggata      7500
     gacaccccgc ggcgtgctcc cgagcaaatg attgtccgga acaaaactca aaaaaaaaaa      7560
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaatc tgtgagagaa ggagggggtg      7620
     gaaatggtct aaaatttcaa attttatgcc aggtgccttt cctttcgtgg gtgcagcgat      7680
     gcgaggagaa tccttttttt ttgttgtgaa atgtagtcag ccaattttta atttttgttt      7740
     aaacaatcgc ctggtggtta aattcagtaa atattgagtg tggagagttt tccgcagcag      7800
     gggcactatc gtttgtagtc aggtcgtctt tattattttg tttttgagag gcggtcaggt      7860
     cgggtggaaa attatgttag tttccccccc tctccgaaga aggcaaattt aaattaatta      7920
     aattgatgta ttttttatca aattttattg ttccttatta ttactgtcat tatcgatcat      7980
     tgtattgatc attgaatttt attgttcctt attagtttta gtctctttaa ttgtatcttt      8040
     tcttgttatc tttagttgat ttgtttaaat actacgtgac attcctgtac tgattgaaga      8100
     aataacttgt tctctagtcg accctttaat tgtagctttt gttccccatt ttattcacct      8160
     gttgttcttt tacggtctaa tcttttgtac accattctta acaacctttt aaatgttcct      8220
     ttgcgtgtgg caaaaaccaa atattaatga ttgagggaat ggattttgtt ttgtgtgtga      8280
     atgagctttt tttaatactt cttaagtact agtcttagag ttaagttagt tctgtatggt      8340
     acggccgctt agtatgtaag attaggatta ttgtaaaacc ctaggcttaa gttttttttt      8400
     actttgatat ccttttccca atttcattgt tcatgtttca tgttcattaa tttgtcacca      8460
     aagaaaacca aagatatatg tgtaccaaaa taattagctg taagttttaa gcgaccatag      8520
     aaacgtgttt tgaactttta ttatcagtgg gaatttttat cgggtcattt cgaaaaataa      8580
     tttgtcaatg tattagaact tttaaaatct gtttcaacct tccatgtcac ttgtgctctc      8640
     tatgtcattt gaattttaag tactgtcacg ttagtataag ttttaagttg tactttcttt      8700
     aataatttct gttaagttca tcgttgattt cttttcatcg atttttcatt ctatttattt      8760
     ttcattcttt ttagcttctg ttgtttataa taccccatac catgttacca aaggaatgtt      8820
     taagggaaaa agttaaaggt ccaatgtttt aaggaaagtt taaagtaaag gggaagttta      8880
     aagttttaaa ggatttataa tgtaaaaaaa aaaaaaaaaa aaaattgata gggaaagtca      8940
     agactaagat ttctatgttg taagaaccct ttttgtaaaa cctttttgta ccaggattct      9000
     tgtggtcaat tgatttcaaa tttttgtcaa caactttgtt tataacgagt agggaaattt      9060
     tcttcttaat tcttttattt ttatttgtaa ttcagcaatt ataatcaagg agtttgtgaa      9120
     ggacccggcc caggtttaag ggcgggagaa gcgctcgaat gttattttgt attttgaatt      9180
     ataaattttt ttatttgtct catgaggtag ggttagtgaa ggacccggcc caggtttaag      9240
     ggcgggagaa gctaggatgt tcccagaagt gttttgacaa agtgtaggat tcatttttat      9300
     tgtttgaaat ttttggtaat gaaggagttt gtgaaggacc cggcccaggt ttaagggcgg      9360
     gagaagcgct cgaatttcaa aaaccagttt tgttttaaat gtagcataga agggccggtt      9420
     gcgtctgggt ctagtctctc agagcgaacc cttggcggtg attccatggt tgccctcttc      9480
     ctactcttat ggtccaattt atcgtagaag tgacatttcc tcgcctcggt tatccgtcgc      9540
     tcaacctgat cgtcatttgt atgatcgtaa aacctttttt ttttggattt tccaattgtt      9600
     tatatccaac ttgtcaagga tgatgccaaa aacggtgccg ttggcgagag cttacccaat      9660
     tgtttttcac tttctcagtt catttatttt tctttctcat gaagaacttt gactaagtag      9720
     gagatgtgcg attccggtgc atcgccaggg attcgttgtg agagatcttg gcggcttatg      9780
     aaagtttccg atgccaagtt tatgtacatg ttactaaatg tttgtcccta gacttgttcc      9840
     gatgttgatc acagggaggt tttaatttta atttttaagc gcacgtacaa gggttgtcgt      9900
     gacttaaatt ttatcctgtt aatagacttt tgtaatcttg tactttccct gttttattaa      9960
     aaagaaaatg taataagttc ctaatagtaa tagtaccgct gtgatatctt ttgtaatttt     10020
     ttgattgtga tattaattgt agtgtatccc gtttaccatg tccttttatt ttcaagacgg     10080
     ggtcttgttt taagggtggg ag                                              10102
//
ID   Gypsy-11_TrVa-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-11_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-485
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 315-315 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 485 BP; 102 A; 117 C; 121 G; 145 T; 0 other;
     tgtaccagtt cctgccgcga tcccctcgat ctccgctgga ggtcgtggag atcgcgtcac        60
     gaattggcaa cgccgaagtc agctggttgc gagcggggta gaatcagtca actctaggct       120
     cgacacagtc ctattctcgc cgcctctccg ttcgcagcag ctgacttcgc ttcatctcaa       180
     ggaatcatat ctcacgtaaa gttactttta tcaatgtatt tccccagttc ccagtagtca       240
     tccaggttta ttagttgttc atgaatatag ctttgttacc ataattcgtt ttctctttat       300
     ttaaaatgtc tttctttctc tgatctcggt cggtcgttgg ccggccggtc catggggggt       360
     cccgggttgg ttggtggtct cattctcgaa ctcttataga accaaaagat ccacggggaa       420
     ggttgagttc gcacttccga agggatccag gatgaaagtg gataagggtt tggaagtgtg       480
     taaca                                                                   485
//
ID   Gypsy-120_AA-I repbase;    DNA;    INV; 5406 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-120_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5406
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5406
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2153-2153 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1170..4643
FT                 /product="Gypsy-120_AA-I_1p"
FT                 /translation="MLYRYRFHNLIQGIEESAENYILAIKLLGENCGFGDH
FT                 KEEAIKDRIILGLRDEELKKKLLMEDGMNLEEVEKRVVRSELASLRAKYLG
FT                 DEGSRVFSIQHRLGARSNEYGENGRNRQGRSFVRFNSNNRRYSRSRSGGRT
FT                 PREDNTYSRDKYNYNGRDRYNNGNNNRRTDHSQLTCNYCKRLGHIKRNCRL
FT                 LKGSQTINFVQQENLDKVDGIYDFKRLRIDSDGSNEEEEDVYPCMMIKSIN
FT                 HISEPCLVDALINNINLRMEIDCGAAVSVMSSYTYSAKFSHIGILPCKSKL
FT                 IVVNGETLDIVGKMFIDTELNNRKQQVTLIILNSKHKFTPLIGRNWLDIFY
FT                 PDWRNVFSRSLSVNNLDVASNSHKYEPGSIKLMFPNVFKKDLSEPIIGHEA
FT                 DLTLKKETPIFRKAYDVPYRLRDKVLKHLEHLEEQRIITPIDVSEWASPVV
FT                 IVIKKDGDIRMVIDCKTSINKVIIPSTYPLLLSQDIFASLSGCKYFCSLDL
FT                 TGAYTQLQLSDRSRKYMVINTIKGLYTYNRLPQGASSSASIFQQIMDNILI
FT                 GLENVSCYLDDVLIAGKTLEECYEKLMCVLDRLKKANIKVNYEKCKFFVQS
FT                 LEYLGHMVTDVGLSPSPEKLSTIQSAKPPTNVSELKAFLGLINYYGKFVPH
FT                 LASKLKCLYSLLKKNARFNWNDECQKAFLNCKESLINANILEFFDPFKPIV
FT                 VVSDACNYGLGGVIAHVIDGLEKPISFTSFSLNSAQKSYPILHLEALALVC
FT                 TVKKFHKYLFGQRFTVFTDHKPLIGIFGKEGKNQLCVTRLQRYVIELSIYN
FT                 FDIVYRPASQMGNADLCPRFPLKQEVPKSLDICIINSVNFFNDFALDFTSI
FT                 AKETNKDPLLLSQIKLFVVRGWPNKLEKSYREVLSLKDDLEESGGCLLYKD
FT                 RVFIPKSLQPESLKLLHANHCGIVKMKQTARRSLFWLGINSDIENFVSICQ
FT                 ACLQMTVVPAKPETTPWTPTTRPFSRLHADFFYFERLTFLLIVDSYSKWLE
FT                 IELMRFGTEASKIVRKFASVFARFGLPDVLVTDGGPPFNSAVFITFMERQG
FT                 IKVMKSPPYNPNSNGQAERMVRTAKDVFKKFLLDPQTRYLPIEDRLIYXLG
FT                 NYRKTCCSDGKYPSEKILSFKPKTLLDLLHPNKHYKQYLEMPPKEQQTIV"
XX
SQ   Sequence 5406 BP; 1856 A; 824 C; 1111 G; 1614 T; 1 other;
     gtgtcggcga ggaacaattc gaaccggtaa tttagtgacg gaaagtgatt acaaggttta        60
     agagagtgcg aacttaacac gtgcttatta ggcacatgag tataacatta gtgtacgaat       120
     aattcgttag tcgttatagt aaaatcgttg caattcggga tatagttaat caaggtgata       180
     caaagggcac attttttctc caaaagaacc atataagaga tctacaatgt gaatagctgt       240
     tgttcttgaa caaagccttt tgtgagaaga ttgcgccagt ttctattcga cagaagcgca       300
     catatcaacc attttgttaa aacacaagtg aatactaaag ctgtgaaatt gaattaaagt       360
     gcatcaaggc ttttggcgga aaaattgtac cagtgagata attccggcaa aattaagtgt       420
     cggtgaattc taagaaaatt tattgaatgc gagaggttct cgtaactgag cacagaaaaa       480
     aaagtgtata gatgtttgta gagtggcata cagcaatatt gcaattttta agcacgagaa       540
     gttctcgtaa gcagttggtt atttgaaggt attagcttgt agtaagcaag cagaagaaat       600
     tggataaaga accagtgatt aagtacatcg ccatctagtt tcggaattat atgagaggtc       660
     atcgatacag tgagtgagaa gtcagttgga catctataca gtgagtgaga ccagtgctca       720
     tcgacattgg agtgagacga gccatcagtc tggggtgaga cgattcacca gtgggaagag       780
     cctttggaca tcgcatacca agttaacatc gacatctaaa gtaatatcaa gatcacgtaa       840
     gtcgttcagt ttttttttcc tttttacata ttctgattat cattttctat cattttaaag       900
     cgtctaatca gccataatgt ctttaattgg ttccgtcgat cattatgtcc gtggtactag       960
     tttttctagt tacatggagc gcatgggatt tttgtttcat ttgaacaaag tgaatgctga      1020
     aaacaaaaaa agcttgttaa taacacttgg gggaccagtg atatttgatg aattgaaatt      1080
     gttgtacccc aataaggatt tgaacacaat cgattatgat gacatgatac aaaaattaaa      1140
     aaaaccgttt cgataaggca gagccaaata tgctttatcg ttacagattt cataatctca      1200
     ttcaaggcat tgaggagtct gctgagaatt atattctagc aattaaactg ttaggagaaa      1260
     attgtggttt tggggatcat aaggaagaag ctattaaaga ccgtattatt ttgggtttga      1320
     gagatgagga attgaagaaa aagttattga tggaggacgg aatgaatctt gaagaagtag      1380
     agaaaagagt cgtgagaagt gagttagcta gtttgagagc aaagtatttg ggagatgaag      1440
     gatcgagagt attttcgatt caacacaggc tgggagcaag aagtaatgag tatggagaga      1500
     atggtagaaa caggcaagga agatcattcg tacgttttaa cagcaacaac cgtagatata      1560
     gtcgtagcag gagtggtgga aggacgccta gggaagataa tacatatagt cgagacaaat      1620
     acaattacaa tggtcgcgat aggtacaata acggaaacaa caacaggcga acggatcact      1680
     cacaattgac ttgtaattat tgtaaacgat taggccacat caaacgaaac tgtaggttac      1740
     tcaagggatc tcaaacgata aattttgttc agcaggagaa tttagacaaa gtagatggta      1800
     tttatgattt taaacgcttg agaattgatt ctgatggttc aaatgaggaa gaagaagatg      1860
     tttatccttg catgatgata aaatctataa atcatataag cgagccatgt ttggtagatg      1920
     cattaataaa taacatcaat ttgcggatgg agattgattg tggagcagca gtttctgtaa      1980
     tgagtagtta cacctattcc gcaaaatttt ctcacattgg aattttgcct tgcaaaagca      2040
     aactaattgt tgttaatggt gaaacacttg acattgtggg aaaaatgttc atagatacgg      2100
     agttgaataa caggaaacaa caagttaccc ttatcatttt gaatagtaaa cataaattca      2160
     ctcctttgat tggtcgaaat tggcttgaca ttttttaccc tgattggaga aatgtgttct      2220
     ccagatcact atcggtaaat aatcttgacg tagcatctaa cagccacaaa tatgaaccag      2280
     gtagcataaa gctaatgttt cccaatgttt ttaagaaaga tttaagtgaa ccaattatag      2340
     gacatgaagc agaccttact ttaaaaaagg aaacaccgat atttcgcaag gcctacgacg      2400
     taccatatag acttagggat aaggtgttga aacacttgga acacttggaa gaacaacgga      2460
     ttataacacc aattgacgtt agtgaatggg cttccccggt ggtgatcgta attaagaagg      2520
     atggagatat acgcatggta attgattgta aaacatctat taataaagtc ataattccaa      2580
     gtacatatcc tcttctatta tcgcaagata tttttgcatc tctttctggg tgtaaatatt      2640
     tttgttctct cgatttgacg ggggcgtaca cgcaacttca gctttctgat agatctcgta      2700
     aatacatggt gattaatacg ataaagggtc tatataccta taatcgatta ccccaaggag      2760
     cgtcatcctc cgcctctatt ttccagcaaa ttatggacaa tattctgata ggtttagaga      2820
     atgtgagttg ttatctggac gatgtcctta ttgctggtaa aacattagaa gaatgttacg      2880
     aaaaacttat gtgtgtgtta gatagattga aaaaagcaaa tataaaagta aattatgaaa      2940
     aatgtaagtt ttttgtccag tctttggagt atttaggaca catggtaaca gatgtaggat      3000
     tatcaccatc accagaaaag ctttcaacaa tacaatcagc aaaaccacca acgaatgttt      3060
     cggagctcaa agcatttctg ggtttaatca attattacgg aaaatttgtt ccgcatctgg      3120
     catcaaaact caaatgcctt tatagcctgt taaagaaaaa tgctagattt aattggaatg      3180
     atgaatgtca aaaagcattt ttaaattgca aggaatcttt gattaatgcc aacattttag      3240
     aatttttcga cccattcaaa ccaatagttg ttgtatcaga tgcatgcaat tatggattag      3300
     gaggagttat tgcacatgtt atagacggcc tggagaaacc aatcagtttt acttcttttt      3360
     cattgaattc tgcccaaaaa tcgtatccca ttttgcatct agaggcttta gccctcgtat      3420
     gtactgtgaa aaaatttcac aaatatttgt ttggtcaacg ttttacagtg tttacggacc      3480
     acaaaccctt aataggaata tttgggaaag aaggcaagaa tcagctatgt gtaaccagat      3540
     tacaacgata tgtgatagag ttatcaatat ataattttga catagtttat aggccagctt      3600
     ctcaaatggg taatgcggat ttgtgtcccc gtttcccttt aaaacaggaa gttccaaaga      3660
     gtttagatat ctgtattata aacagcgtta actttttcaa tgattttgct ttggatttta      3720
     cgtctattgc caaagaaaca aataaagatc ctttattatt atcccaaata aaactatttg      3780
     ttgtacgtgg atggcccaat aaattggaaa aatcatatag ggaagtactt tcattgaaag      3840
     acgatcttga agaatcagga ggatgtttat tatacaagga tagagtattt atcccaaaat      3900
     cattacaacc agaatctttg aaactcctac atgcaaatca ttgcggtatt gttaaaatga      3960
     aacagactgc aagacgtagt ttattttggt taggaataaa ttccgacata gaaaattttg      4020
     taagcatttg ccaagcatgt ttgcagatga cagtggtacc agctaaacca gaaactacgc      4080
     catggactcc tacaacacgc ccttttagta ggctgcatgc tgattttttt tattttgaaa      4140
     gattaacttt tcttttgata gtagatagtt attctaagtg gttggagatt gaacttatgc      4200
     gttttggcac ggaggcaagc aaaattgttc gtaaatttgc gtcagttttc gctagatttg      4260
     gtctcccaga tgttcttgta acagatggtg gtcctccttt caattcagct gttttcataa      4320
     cttttatgga aagacaagga attaaagtca tgaaaagtcc tccgtataat cctaatagca      4380
     atggtcaggc agaaaggatg gttaggactg caaaagatgt ttttaaaaag tttctattgg      4440
     acccacagac gagatattta ccaattgaag atcgtttgat atacttwctg ggaaattaca      4500
     ggaaaacgtg ttgttctgat ggcaaatatc catcagaaaa gatattatca ttcaaaccaa      4560
     aaacattgct agacctttta catcctaata aacattataa gcaatattta gagatgcctc      4620
     caaaagaaca gcagacaata gtctgatcct ttttctaact taattccagg ggaagaaata      4680
     ctatacaaga atcctaacag aaaagagatc gaaaaatgaa ttaaagctaa ttttgtgaaa      4740
     agaatctcac gaaatgtttt tcttatttca gttggcagac acatgatgaa cgctcaccgg      4800
     aaccagctaa ggataacgaa gaaacgagag gggtgcacaa gactcaatgt ggccctaccg      4860
     aacaataagc ggcgcagaga gaattctagt tcagatgagg acgagttttt gggtttcccc      4920
     gatgaaccga agccttgtat acctgagttg ggaaacactg ggcacaattc agcagaacgt      4980
     aagaaaaaga tgccatgttt acgacgtgaa atcatcacgc gaagtgtttc gcgttcgaaa      5040
     atagcctgta aggatatacc atcaagcata attggagagt gagagaaact agacgtgtta      5100
     ttgaaataat tgaaatttgc gatacagcga ggtctgactg tgtacaagta aattatgttt      5160
     taattaagta aatgaaattg attgaactta atttgatgat tcttaaagga cttcagattg      5220
     aaatgaaaat atgtggaatt gaaaaaaaaa gtatttatac atacacattt aagtgaagaa      5280
     catatcgctg ttagttcagt gtcttgttaa actatctaga caaaaaaaaa tagtttgaag      5340
     caaacaaaat tgcattcagg atttgatatt gtatattatg taaagttaaa cttagcgatg      5400
     gagaat                                                                 5406
//
ID   Gypsy-120_AA-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   16-JUL-2020 (Rel. 25.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-120_AA_;
KW   Gypsy-120_AA-I; Gypsy-120_AA-LTR.
XX
NM   Gypsy-120_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-222
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1004-1004 (2011).
XX
RN   [3]
RP   1-222
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (16-JUL-2020).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 222 BP; 82 A; 38 C; 42 G; 60 T; 0 other;
     tgttatgtct gattcgacca gaatgggaaa accccatttc catatgtaac ccgaaagttg        60
     tacgaatata tccgatgata tgagataccg agatcctcac tgagtgacca caaacatgta       120
     taaaaagcga aggaataaac gatgacgagt gagtctataa aagtctatct ttgagatcgt       180
     tactttaaag ttagaaagct taaccttata gtgaatataa ca                          222
//
ID   Gypsy-122_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   supercont1.327;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-122_AA_;
KW   Gypsy-122_AA-I; Gypsy-122_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-232
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.327; Positions   36504   36735.
XX
SQ   Sequence 232 BP; 90 A; 42 C; 36 G; 64 T; 0 other;
     tgttaagtat tcccggttcg gtaaatccgc agatacctca acggattctg attgaactac        60
     cacgagcaaa ctgttcagta ctgtaaatgt atgtgacacc aatgtgtata aaaaggaagc       120
     ccaaataaac caaatagtca gttcttaaca gaaatcctaa aagttaaatt aattcttata       180
     ataagaaacg tctcaaaata tttaataaag ttcttgttca cagaacggaa ca               232
//
ID   Gypsy-123_AA-I repbase;    DNA;    INV; 5958 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-123_;
KW   Gypsy-123_AA-I; Gypsy-123_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5958
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5958
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 429-429 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1104..5369
FT                 /product="Gypsy-123_AA-I_1p"
FT                 /translation="MSSNMAFTIEPYRRGTSFSDWYTRXKYFFRVNNVKEE
FT                 DKMAYFITLSGPIMFEEIKLLYPAGNFEEAAFDDLIAKLKSRLDKIEPDLV
FT                 QRYKFSTRVQNPDETTEDFVLALKLQAEFCGFSNFKEIAILDRLIAGIKDK
FT                 HLRQRLLGEEKLTLANAEKIIATWEVARANAGATDEQQVGQGQVAAIQNGT
FT                 GGHFGKTYGKLRHTLDLARQYQEREVNRAAGSSRGPVKSRLGTKPYEGQRG
FT                 QXQFGTKTVHFQQDGGNFRRQRPDYSQMICNFCGMKGHIRKKCFKLKNLER
FT                 DTINLVESYRPGPSADRHINELMERLRADDSEDEDSDTGDLQCMLVSSINK
FT                 ISNPCLINVIVEGKDLEMEIDCGSTVSVISKSRFMSEFDVPLHKYGKQLIV
FT                 VNGAKLKIEGEAKVSVKLKGKEEMLQLLVLDCENEFYPLLGRTWLDVFYPN
FT                 WRQFFSASLAVNNLKDESSNDTVENIKQRFSNVFEKDFGHPINGFKAELVL
FT                 KDETPIFKKAYEVPYRLRDQVAEYLDKLEKQNVITPIDTSEWASPIIIVMK
FT                 KNNDFRLVIDCKVSINKSILSNTYPLPTAQDVFSNLSGCSVFCALDLEGAY
FT                 TQLELTERSRKFVVINTMKGLYVYNRLPQGASSSASIFQQVMDKVLQGIEN
FT                 ISCYLDDVLIAGRTLKECKEKLTLVLERLAKANIKVNFEKCKFFVSELVHL
FT                 GHVITENGLMPCQDKISTIEQAKAPKNESQLKSYLGLLNYYHKFIPHLSSK
FT                 LYHLYNLLKNNVKYVWDDNCQKAFEESKTLLVNTDFLEFYDPRKAIVVISD
FT                 ASSYGLGGLIAHVVNGIEKPISFTSFSLNDAQKKYPILHLEALALVCTIKK
FT                 FHKYLYGQHFIVYTDHKPLVGIFGKEGKNSIYVTRLQRFILDLSIYDFDIV
FT                 CRPSNKLGNADFCSRFPLQQEIPDGLDTDAVRSINFSKDLPIDAEKIAEAT
FT                 GNDDYLQKIKYFMHNGWPKKVEKRFADVFANQQDLEILDDCLLYKDRVIIP
FT                 VIYQKQILELLHGNHAGIVKMKQLARLMVYWFGINSDIEKYVDSCLTCNSM
FT                 AIPHTSKATSKWIPTIKPFSRIHVDFFYFEHRTYLLIVDSFSKWIEIEWMK
FT                 QGTDCNKVLQRLAAFFARFGLPDVLVSDNGPPFNSFGFNSFLERQGIKVMK
FT                 SPPYHPSSNGQAERLVRTVKEVLKKFLLEPKIAVLDLEDQINLFLINFRNN
FT                 NITSDGHFPSERIFSYKPKTLLGLVNPKNHYKKQLTVPQPEDDIIQQEFGG
FT                 KLPRQSNDALDNLMVGDEVWYRTNNPHSQARWVKAIFSKKFSHNVFQIHVG
FT                 NVXIMAHRSQLKRXKECPVWSLPNVIIRRLRDDELEGLEVGGSTNVDEVMD
FT                 EMQTDNDHEPVDTTPKGGTHSRKRKMPDXGTDAEGLRRSKRSRKTKRDKEY
FT                 CYEFXLGF"
XX
SQ   Sequence 5958 BP; 1903 A; 1005 C; 1287 G; 1744 T; 19 other;
     wgcgtawata tcaccgtgct cagggaatag tccgckggtw attcatccgc tagwttctaa        60
     gtccggtcgt tctaagtcta ccctwagtta gtaaggataa atcttgaaag tggcgacgag       120
     aaaaatcgga aaaagtgatt gtgcgtgact ttgaggttgg tgtgtcagca tcccaccatc       180
     agcaacacaa gccaacagca gcagaattta gttgatcgat cggaatttcg ttcatctttc       240
     gccccggttg aaatagtgga agcaggagaa acacagattc gaaaccttcc catccaactg       300
     tggatcgwca acctaccgat tgacggtgtc cggtattcat tggtaatcgt gagtataaag       360
     gacaacaagt gtgcaaaggc gcaattactt gtgataaaac cagccatctt tgcgcttggc       420
     gtggcttcga tttttttctc cattgttcta gcgttcaggc agagagagag tggacacagt       480
     ggagaaatat tgttcaatct ttcgtagaaa ttattttttt tttctttcaa aatattgttg       540
     ggttttctgt tttattatat tacggcaagg tattaagagt gttattttta ttttatttca       600
     ctaatttaga aaacagtgtt attcttactg gtaagcggaa ctggcttttg gcgttgcgtg       660
     gttgatcgat tgattccagg cggaactgtg tagtggttcg atcattccgg gcggaatagc       720
     gttttctata gtcgattacg cccctgcagt tcgtctgtta gtggagttta ctcacctttg       780
     attgaaaccg aggaactaca aacgccgaac caattgaata gtagtcgaca cggccagcca       840
     aaagtaattt acaaggcgga attgttccgg taagtcataa gttatttcat actatattat       900
     tacgccgaat acctctgaag agagcggaca ttttcgttgt atttacaatt ccattttgtt       960
     aattaggcca ttactctttg tttcgttttc ttttgttgca ttttactttt gatacttcct      1020
     tttttgtttt gccttttgaa ttgaacatat tatctacctt ttattttagt gaaagcttga      1080
     gtstaaactt ttgatcatac agtatgagct ctaatatggc ttttaccatt gagccttaca      1140
     ggcgtggtac ctccttcagc gactggtata ccaggcwgaa gtattttttc cgcgtaaata      1200
     atgtgaaaga agaagataaa atggcttatt ttatcacatt aagtgggcca ataatgttcg      1260
     aagaaataaa attgctctat ccggcgggta attttgaaga agcggctttt gacgatttga      1320
     ttgccaaact caaaagtcgc ttggataaaa tagagcccga cctagtacaa cgctacaagt      1380
     ttagtacaag agtacaaaat ccggatgaaa ccacagagga ttttgtactg gcgttaaagc      1440
     ttcaagctga attttgtggg tttagtaact ttaaagaaat agctattctt gaccgcctta      1500
     ttgcgggaat caaagataaa catttaagac aacgtctcct aggggaggag aagctaactt      1560
     tggctaatgc ggagaaaatt atagcgacct gggaagtagc aagggctaat gcaggcgcaa      1620
     cagatgaaca acaagtaggc caaggacaag tggcggctat tcaaaatgga acaggtggac      1680
     attttgggaa aacgtatgga aagttgagac acactttaga cttggcaagg cagtaccagg      1740
     aacgggaagt gaatagggca gctggaagca gccgaggacc tgtaaaaagt cgcttgggta      1800
     caaaaccata tgaaggacag cgcggacaaa sacaatttgg cacaaagacc gttcattttc      1860
     agcaagatgg aggaaatttt aggagacaaa ggccggacta ctcacaaatg atttgtaact      1920
     tctgtggaat gaaagggcac attaggaaga agtgttttaa gctcaaaaat ctcgaaaggg      1980
     acacgattaa tcttgtggaa tcttacaggc ctggtccttc ggctgacagg cacatcaatg      2040
     agctaatgga acggttgaga gcagatgatt cggaggacga agatagtgac acaggtgatc      2100
     tacaatgtat gttggtgtcg tctattaata aaataagtaa tccctgttta attaatgtga      2160
     tagtagaagg taaagacctt gaaatggaga tagactgtgg ctccactgtt tcagtaataa      2220
     gtaaaagcag atttatgtct gaatttgacg tcccgttaca caagtacggg aaacaattga      2280
     ttgttgtaaa cggtgctaag cttaaaattg aaggagaggc aaaggtctca gtaaagctta      2340
     aaggcaaaga agaaatgcta cagttactgg tcctagactg tgaaaatgaa ttttatccct      2400
     tattggggag aacttggctt gatgtgtttt atcctaattg gaggcaattt ttctctgcat      2460
     ccctagcggt taataattta aaagacgaat ccagtaatga tacggtggag aacataaaac      2520
     aacgtttcag taatgttttt gaaaaagatt ttgggcatcc aatcaatgga tttaaggcag      2580
     aattggttct gaaagacgaa acaccgattt ttaaaaaggc ttatgaagtt ccatacaggt      2640
     tgagggatca agtggccgaa tatttggaca aattagagaa acaaaacgtt attacaccaa      2700
     ttgacaccag cgaatgggca tcccctatta tcattgtgat gaagaaaaac aacgattttc      2760
     gtttagtaat tgattgcaaa gtatcaatca acaaatcaat tttgtccaat acatacccat      2820
     tacctacggc acaggatgtt ttttcgaatt tatcaggatg tagcgttttt tgcgctcttg      2880
     atttagaagg agcatataca cagttagaat tgacggagag gtccaggaaa tttgtagtta      2940
     ttaacaccat gaaaggttta tatgtttata ataggctccc tcaaggcgct tcttcaagtg      3000
     cttctatatt ccagcaagtc atggacaaag ttttacaagg catagaaaac atctcatgtt      3060
     acctagatga cgtattaatt gcgggaagaa ctctaaaaga atgcaaagaa aagcttactt      3120
     tagtgctaga gaggttggca aaggctaaca ttaaagttaa ttttgaaaaa tgtaaatttt      3180
     ttgtttcaga attagttcat ttgggacatg ttataactga aaatggttta atgccttgtc      3240
     aagacaaaat atctacgata gaacaggcaa aagctcctaa gaatgagtcg caacttaaat      3300
     cttatctagg tttgttgaac tattatcaca aattcatacc acatttgtca tcaaagcttt      3360
     atcatttgta caatttgttg aaaaataacg tgaaatatgt ttgggatgac aactgtcaaa      3420
     aagcatttga agagagtaaa accctgctgg ttaataccga ttttttagaa ttttatgatc      3480
     cacgcaaggc tatcgtggta atttcagacg catcaagcta tggkttagga ggattaattg      3540
     cccatgtggt aaatggtata gagaaaccaa tcagcttcac ttctttttcc ttgaatgatg      3600
     ctcagaaaaa gtatcccatt ttgcacttag aagctctggc tttagtgtgc actataaaaa      3660
     aatttcacaa atatctctat ggacagcatt ttatagttta tactgatcat aagccactgg      3720
     ttggaatttt tggtaaagaa gggaaaaatt caatttatgt tactaggctc caacgtttca      3780
     tattggattt gtcaatttac gattttgata tagtatgccg accgtcaaat aagttgggaa      3840
     acgctgattt ttgttcaaga tttccactac agcaggaaat tcctgatggt ttagatackg      3900
     atgctgtgag gagtattaat tttagtaaag acttaccaat tgatgcagag aagattgctg      3960
     aagcaaccgg aaacgatgac tatttacaga aaattaaata tttcatgcac aatggatggc      4020
     caaaaaaggt agaaaagcgt ttcgctgatg tttttgcgaa ccaacaagat ttggaaatat      4080
     tagacgattg tctactctat aaggacagag tgattatacc agtgatttac caaaagcaaa      4140
     tattagaact tttgcatggc aatcatgcag gaatagttaa gatgaaacaa cttgctagac      4200
     ttatggttta ctggtttgga atmaatagtg atatcgaaaa atatgtagac agttgtctaa      4260
     cgtgcaatag tatggccatt ccccatacat ctaaggcgac atctaaatgg atacctacaa      4320
     taaaaccgtt cagtagaatt cacgtagatt ttttttattt tgaacatcgg acttacctgc      4380
     taatagttga cagtttctcc aaatggattg aaatcgaatg gatgaagcaa ggaacagatt      4440
     gtaataaagt tttacagaga ctagcagcat ttttcgctag atttggtctg cccgacgtgt      4500
     tagtatcgga caatggtcct cccttcaatt cttttgggtt taacagtttt cttgaaagac      4560
     aaggtattaa ggtaatgaaa agcccacctt atcacccttc tagcaacggg caagctgaac      4620
     gcttggttag aackgtaaag gaggtattaa aaaaatttct gctagaaccc aaaattgcgg      4680
     tattagatct ggaagaccag ataaatctat ttttgattaa ctttagaaac aacaatataa      4740
     cgagtgatgg acactttcca tctgaaagaa tattctctta taaaccaaag acgctgttag      4800
     gattagtgaa tccaaaaaac cattacaaaa aacagcttac tgtaccacag ccagaagatg      4860
     atatcatcca gcaagagttt ggcgggaaac tcccgaggca atctaatgat gcactggaca      4920
     atctgatggt gggagatgaa gtgtggtaca gaaccaacaa tccccacagt caggcaagat      4980
     gggttaaagc catttttagt aaaaagtttt ctcacaatgt atttcagata catgttggaa      5040
     acgtggsaat aatggcccat cgcagtcagc ttaagaggwg caaggagtgt ccggtgtggt      5100
     ccctgccaaa cgtgattatc agaagactgc gagatgacga actagaaggc ctggaagtag      5160
     gaggatcaac aaatgttgac gaggtcatgg acgagatgca gactgacaat gaccacgaac      5220
     cagtagacac gactccaaag ggaggaaccc acagcagaaa gaggaagatg ccggatwccg      5280
     gaaccgacgc cgaagggctc cgtcggtcca aacgatcgag gaagaccaag cgagataagg      5340
     aatattgcta cgagttcwga ttaggtttct gatacttgtt ctatattgaa cgatcgaawt      5400
     gtttatttta tagttaagta atgttgaact agaagttcat ttgatttgaa ttcgtattaa      5460
     attggctgag gcctaatctg attcattagc taaaaggggg aagaattgtt atacctagaa      5520
     atcctttata agagagattc gcggaagctg acatttctgt caaagtgtga gccaatcgag      5580
     cagcgagagc tgtcaaagtg tgagccaaac gaacatgcgt tatgtttgtt ttgaactttt      5640
     cttgaggagt aatgcaatcc gcttgaaatt atttcagtaa aagcaatttt gcatgaagca      5700
     aaaatatgaa atgttttact tttttgaatt tttgtcaatg cgatttttag ttttcggctg      5760
     tttattagtt ttgatatgta gcccaaagat caataacgaa acaaaataca ctttatagca      5820
     atgaggaagt catgtccgtg ttacagtatt attctcgacg ccgagcaaaa tcagcagtgc      5880
     tggtctgttg ccaaatcatt ccattttact tccgcttatc tctctataaa ggatcactag      5940
     ttataccctt aacgatca                                                    5958
//
ID   Gypsy-123_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   supercont1.240;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-123_AA_;
KW   Gypsy-123_AA-I; Gypsy-123_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-154
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.240; Positions  426707  426554.
XX
SQ   Sequence 154 BP; 53 A; 32 C; 31 G; 38 T; 0 other;
     tgcgcactcc cctgcgcatt cgaaataaaa cgtcaatgat cgtttttact tcgggagttc        60
     gatctgcgat cgaacggtta cctatgacta tgaaataaaa cagagaggca gaaagttgtg       120
     agacactgaa caaacaacaa gtaatatttc taca                                   154
//
ID   Gypsy-124_AA-I repbase;    DNA;    INV; 5652 BP.
XX
AC   AAGE02024975;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-124_AA_;
KW   Gypsy-124_AA-LTR; Gypsy-124_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5652
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024975; Positions   16833   11182.
XX
CC   Positions [4589-5065] - Integrase core
CC   'GAACG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           828..2096
FT                 /product="Gypsy-124_AA-I_2p"
FT                 /translation="MSWESDFENDDEYDTMSRPPTPGSNILTDDDMEAGRY
FT                 VRMPLNHRMDWFDENGPSSAGGDAADGRSEACVPAQCSEELVAATPSNGSI
FT                 GAEKAEANDRLASLEKRIVELSRLLAEKQSSEKPTTADQSWAAPSREAEAA
FT                 GPSSSIRMDHIPPFPKDVPSNGMWEAFNRYLEKFEIALAIYNISDPVKRAQ
FT                 CLYLAIGDDLQSIVRGAGLRPSLQDPDCYKKMVANIAEYFRAMTDPTAELE
FT                 AFTKLKQERGEPTVTFHARLVSKAQQCGRSPKEQEHSVRIQLLRGMANQEL
FT                 ARAARTFDYNTSFVVQSAARSEAFEAEAKPGASSDQIFAVKEFPPRVRKRN
FT                 HHGQQNGVADKRRRFAAPLHKRDRCSRCDRAQHKGKLCPALDRDCRQCGRR
FT                 GHFAATCRMKKIERVEKVEPLPFSEDEKV"
FT   CDS           2526..4343
FT                 /product="Gypsy-124_AA-I_3p"
FT                 /translation="MNNPSKTTNLRAYAAKNPMYVECSFSSTINALGTGNP
FT                 SITAQFLVVPSGHRSLLGRATSGDMRLLKVGASINSCGEVIAVDVFPKMPG
FT                 VLVKFSINKSVAPVRNAYYNVPAAYREGARQRLREMEQRGIIERVTTAPEW
FT                 ISGMSAVPKGKNDFRLVVNMRAANKAINREYFRLPLLHEMKTKLHGARYFT
FT                 KLDLTSAYYHLELAKDSRDVTTFLTEEGMFRFTRLMFGVNCAPEIFQREMT
FT                 RVLEGIPNIIIYIDDILVFAGTIEELHATVNKILELLRTNNLTLNESKCEY
FT                 DKERVNFLGHELDKEGFHIDSVKTKHIEKFRPPETPSELRSFLGLAAYVSP
FT                 YIQNFSDLTNPLWTVSTTRTWSWGPQQSAAFEATKKAIADCTIALGYFSEE
FT                 DKTVLYTDASPVALGAVLVQENTKSIPRIISFASKALTPTEQKYAQNQREA
FT                 LGAVWAVEYFSYYLLGRDFTLRTDAKGVAFILNRSRETSKRVLTRADGWAL
FT                 RLSPYSYKVEYVEGKFNIADPSSRLYDGKDEPFDESTSPWEIAKIEANAIS
FT                 LLTDEEVRSATREDDVLSQVTEALESGEWPKNLHRYKQISEDLCVDDGIIT
FT                 KNGMNLQK"
FT   CDS           4505..5524
FT                 /product="Gypsy-124_AA-I_1p"
FT                 /translation="MPKDAEEWVKSCEICITNGMPEKPTPMERIMAPKTVW
FT                 ETIALDFNGPYAKFGGIYILVLVDYRSRFIIASPVKSTNFEETRKFLCNVF
FT                 EREGLPKNVKCDNGPPFNSDDFRNFCIERGIQNIYSTPHFPQQNGLVESYM
FT                 KLINKAMASAVSSGSRYEDELSSAVKAHNAAAHSITKVAPEEMMYGRKFRR
FT                 GLPLMNRGTVALNDDEITKRDREAKLKGKSYEDRRRGARKCQIIPGDVVIV
FT                 ERNVRSKGDSRFDPKRYTVVQQKNGNLLLSSADGQQLRRHVTQTKRVKNDA
FT                 PRVRQPPVEQVNKHTEEHQRPVREKKIPSYLKQYVRVVEEEKLYLNQR"
XX
SQ   Sequence 5652 BP; 1732 A; 1170 C; 1375 G; 1375 T; 0 other;
     atggcgatct ctgccaggta taatatcaat taggatatta tttaaattcg aatagagtat        60
     tgcgcaagcg agaatcaccc aactggttgc aaaaaaacag caattaaatg tgtgaccata       120
     ttctgtgcga aaagtgaaat tctgaattgt gaaaagcaaa ttcgaaatct acgtgatcca       180
     gtgaccgcca tttttttttt tctcgtttgt gacgattgtg aaaattcgac gagcaaggaa       240
     gggattcctt attccgagac ttatttacgg gacgtaaatg acagaaaagt gacctgcccg       300
     tgatcaagtg ggacgcttga cgggaataac tagtctggtt attttaattt ttgcctagtt       360
     tgtgggacgc aaattagaag gaaagcgtag tggagttttc gggacgaaaa catacgtgaa       420
     agtaccacaa gcgggacgct tgatgagaaa tgcaagtggg acgcttgatg agattttttt       480
     attgatttgt gggacgcaaa taataaaaaa aaaatgcgtg atagcctttc gggacgaaag       540
     ctagcacaca attatgattt acgtcattga gcgggacgct tggtgaggga attccgcatg       600
     gtccgttgat tccttggttt gtgagacgca aatcggaata cggaaggcgt tgtagagttt       660
     tcaggaaaac taacgtggaa ggaccacaag cgggatgctt gatgatgaaa tatgctcgaa       720
     atagtttgca cacttacgta cagatagtac tgtatggaga gcgtaaaggt agtaaccgat       780
     tgtacttgtt tcatccgtag gaaacagata acgagaactt ttcgagaatg tcgtgggaaa       840
     gcgattttga gaacgatgat gaatacgaca ccatgagccg cccaccgact cctggatcga       900
     acattctaac cgatgatgat atggaagcag gacgatacgt aaggatgcca ctaaaccata       960
     gaatggattg gttcgacgaa aacggaccgt cgtcggcagg aggagacgca gccgatggac      1020
     gttcggaagc gtgcgtgcct gcacaatgtt cagaggaact agttgccgca acgcctagca      1080
     atggttcaat tggggctgaa aaagcggaag ccaacgacag attagcctca ttggagaaga      1140
     ggattgttga attgtcgcgc cttttggccg aaaaacaatc aagcgaaaag cccactacag      1200
     cagatcaatc ttgggcggca ccatctcgag aggcagaggc tgctggacca tcatccagta      1260
     ttcgtatgga tcatatcccg ccgtttccga aggatgtgcc atccaatggt atgtgggaag      1320
     ccttcaacag gtatctagag aaatttgaaa tagccctggc catatacaac attagtgacc      1380
     cagtcaaacg agctcagtgt ctgtacctcg ctatcggaga cgacctccaa agtatagttc      1440
     ggggtgcagg cttaagacca agccttcaag atcctgattg ctacaaaaag atggttgcaa      1500
     atattgccga gtattttcgg gctatgaccg atccaacggc tgagctagag gcttttacta      1560
     aactgaagca ggaacgaggc gagcctacag tcacatttca cgctcggctg gtatcaaaag      1620
     cgcaacagtg tggtcgcagc ccaaaagaac aggagcactc tgtcagaatc caacttttga      1680
     gaggtatggc gaaccaagaa ctcgcccgtg ccgcaagaac attcgactac aatacgtctt      1740
     tcgtcgttca atcggccgcc cgaagtgaag cttttgaagc tgaagctaag ccaggagcat      1800
     ccagtgacca gatctttgcc gtcaaggaat tcccaccaag ggtccgtaag cgaaaccatc      1860
     atggacaaca gaatggtgtt gctgacaaga gaagacgatt tgctgcgccg ctgcataaaa      1920
     gagatcgttg ctcccggtgc gatcgtgcac agcataaagg aaagttatgt cctgcccttg      1980
     accgagattg tcgtcaatgc ggtcgtcgtg gccattttgc ggcaacctgt cgtatgaaga      2040
     aaattgaacg ggttgagaag gtggaacctc tgccgttcag cgaggatgag aaggtatgat      2100
     tctttgatct ttaagatttt actgtattgt tttctttctc caaattattg aagaagtttt      2160
     gataaacgaa taaagaagtt gaattagttg agaataacaa acataaataa acaaaaaata      2220
     tccaaaaata acgccgataa attgtttttg cttacaactc ctccaatcca ttttcgatct      2280
     tggttttcga tttaagttca cttctggaaa tttcgcagat tttgattggc ccatttattt      2340
     ctattcgatg ttatttatag ctcatcaata ccctatcgct aaaggatgtt ctggtattgt      2400
     gcagtattgg aaaatctgaa ccaattgagt tcctaattga ctcgggagcc gatgccaaca      2460
     tcataggggg taatgattgg aataatctac aaaagcaggt ccagaaagga ctagtggata      2520
     taacaatgaa caaccctagc aaaactacca atctgcgagc ttacgcggcg aagaacccaa      2580
     tgtacgtcga atgctcattt tcttccacca taaacgcctt aggaacaggg aatccatcca      2640
     taactgcgca attcctagtt gttcctagtg ggcatcgctc attattaggc agagcaactt      2700
     ccggtgatat gaggttgttg aaagtaggag catctattaa cagctgcgga gaagttatag      2760
     ctgttgatgt atttcccaaa atgcccggcg tcctagttaa attcagcatc aataaatctg      2820
     tcgcgccggt ccgcaacgca tactacaatg tccctgccgc ataccgagaa ggggcaagac      2880
     agcgattgcg cgagatggaa cagaggggca taatagaaag agttacaacc gctcctgagt      2940
     ggatcagtgg gatgtcggcg gtccctaagg gaaaaaatga ctttaggctg gtggtaaaca      3000
     tgcgcgccgc caacaaggca ataaaccgtg agtattttag actaccgctg cttcacgaaa      3060
     tgaagacaaa actccacggt gcacggtatt tcacaaaatt ggacctcaca agcgcctatt      3120
     atcatttgga gcttgcgaaa gattcccgtg atgtaactac attcctcact gaggagggta      3180
     tgtttcgttt cactcgcctc atgttcgggg taaattgtgc tccggagatt ttccagcggg      3240
     aaatgactcg ggtgctagag ggcataccga acatcattat ctatatagac gacatcctgg      3300
     tgtttgctgg aacaatcgag gaactccacg caacagtcaa caagattctt gagttattgc      3360
     ggactaacaa cctcacgttg aacgagagta aatgtgagta cgacaaggaa cgtgttaact      3420
     tccttggaca cgaattggac aaagaagggt tccatatcga ttcggtgaag accaaacaca      3480
     tcgaaaaatt tcgacctcca gaaacaccat ccgaactgag aagctttctt ggacttgcgg      3540
     cgtacgtaag cccatacatt caaaattttt cagacttgac gaaccccctc tggacagtat      3600
     caaccacgag aacatggtcg tggggtcctc aacagtcagc agcatttgaa gccacaaaga      3660
     aagccattgc tgactgtaca atagcattag ggtatttctc ggaagaggac aaaacagtgc      3720
     tatatactga tgcttctcct gttgcactcg gcgccgttct agtacaagaa aacaccaaaa      3780
     gcattcctcg tatcataagc tttgcgtcta aagcgttgac gcctaccgaa caaaaatatg      3840
     cccaaaatca gcgggaggca cttggcgcag tttgggcagt tgagtacttt tcgtactact      3900
     tacttggtcg agattttacg ttgcgtacag atgcgaaggg agtcgcgttc atattgaaca      3960
     ggtctcggga aacctcaaag cgagtattga cgagagctga cggttgggct ctacggctaa      4020
     gtccttacag ctacaaagtg gagtacgtgg agggaaaatt caatatagca gatccttcct      4080
     cccgcctgta tgatggcaag gacgagccgt ttgatgagtc caccagtcct tgggagattg      4140
     ccaaaatcga agcaaatgca atcagtctac taacggatga agaagttaga tctgcaacgc      4200
     gtgaagatga tgtgctgtcc caggttacag aagccctcga gtctggagaa tggcccaaaa      4260
     atctgcacag atataaacag atatctgaag acctttgcgt tgatgatggt atcattacaa      4320
     agaacggtat gaatttacaa aaataaaaaa aaaacagttc catacagctg tattcgtttt      4380
     ctttccaggt tgtgcaataa ttccagaatc gctgcgcaag aaaacactcg atgttgctca      4440
     cgcaggacac ccatctgtag cgaagttaaa gagcatctta cgagagcgcg tttggtggcc      4500
     aggcatgccg aaggatgcag aggagtgggt gaaatcatgc gagatctgca tcaccaatgg      4560
     tatgccggag aagcccactc ctatggaacg tattatggca ccgaagacgg tctgggagac      4620
     aatagcgctc gattttaacg ggccttacgc gaagtttgga ggcatttata ttttggtgct      4680
     ggtcgattat cgttcccgct tcataattgc aagtcctgtg aagtcgacta actttgaaga      4740
     aacgaggaaa ttcctatgca atgtgttcga gagagagggt ttgccgaaaa acgtcaaatg      4800
     tgacaatgga ccacctttca acagtgatga tttccgtaac ttttgcattg aacgtggaat      4860
     ccaaaatatt tattccacac cgcacttccc acagcagaat ggccttgttg aaagctacat      4920
     gaagctgatc aacaaggcca tggcttcggc agtatcctct gggagcaggt acgaagatga      4980
     actttcaagt gccgtgaaag cgcacaatgc agccgcccac tctattacta aagtggcccc      5040
     tgaggagatg atgtacggaa gaaaattcag aagaggattg ccgctgatga accgtggtac      5100
     cgtagcctta aatgacgacg aaatcaccaa gagagatcga gaagcgaaac tgaaggggaa      5160
     aagttacgaa gacagacgta gaggtgcccg caagtgccaa atcataccag gggatgtagt      5220
     gatcgtagag cgaaacgtgc gttcaaaagg ggacagtaga tttgatccca agaggtatac      5280
     ggtggttcaa cagaaaaatg gaaacctttt gctctcgagt gctgatgggc aacagcttag      5340
     acgtcatgtc actcaaacga agcgagtgaa gaatgatgct ccgagagttc gacaacctcc      5400
     agtggagcaa gtgaacaaac acactgaaga acaccaacgg ccagtgagag agaagaagat      5460
     tccttcatat ttaaaacaat atgttcgtgt agttgaagag gaaaaactgt atttgaatca      5520
     acggtaaaac aaataaataa attgaaacat gtactacaca ttgaactttt tgacaaattt      5580
     cataagatga gaataataaa agctaacaaa aattcaaact aacagctctt tttttttaaa      5640
     gctgaagtgg ga                                                          5652
//
ID   Gypsy-124_AA-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   AAGE02024975;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-124_AA_;
KW   Gypsy-124_AA-I; Gypsy-124_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-270
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024975; Positions   11181   10912.
XX
SQ   Sequence 270 BP; 61 A; 62 C; 70 G; 77 T; 0 other;
     tgtgtggcac accctactac gcaacagcat tgatgataat gatgatgata atgatgacga        60
     gtatatcaca tatacacgta gaacgcttgc accgatgtac cgctcatgtt atctgagtgt       120
     gagtgtgcgt ttattctaga gcgaggcttc acagcacatt cgggacttgg ttcgggctct       180
     ttctgcatcc agcgctcgtc aaggtaagac gtgttttcca gcacagccgg ttgggtgatt       240
     ccgcttgaga cgcgcttctg gttttgcaca                                        270
//
ID   Gypsy-125_AA-I repbase;    DNA;    INV; 7830 BP.
XX
AC   AAGE02022342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-125_AA_;
KW   Gypsy-125_AA-LTR; Gypsy-125_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7830
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022342; Positions   54372   46543.
XX
CC   Positions [6603-7070] - Integrase core
CC   'CTGTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2422..3888
FT                 /product="Gypsy-125_AA-I_1p"
FT                 /translation="MARQLAAEKSKIKLLKKKLKWSRNENKLLIDRLNQQP
FT                 ATDSTSGSFGFGEGNRFSSTRNMTETVQDKEREESCKDDDSNPSVENPEVT
FT                 EHISAGIIQENDYGTHRIGTAEDGHEEQPFLSSDDESRIRIARDTTKERQE
FT                 EVRSSVVRTVTGQDESRFLSSMNQLSVASINVPECKPAVDGDIHRQTFEQW
FT                 KDLLVDSMNLAGIDDERTMFTVFKVKAGIKLLEIFRNTKSQNSDSDPQAKP
FT                 FSNAMDRLKSYFGSGSDILLMRRKLALMAQQANETDLSFVTRVGSTARLCG
FT                 YDEGKEFEEVAATIAEHARDREVRATALKSLSKKGCFTDLVDKVREIESIR
FT                 LNEEYVMRKQGKVSHATVAAVAAPYQHRNKFPERYQTRPKPYKRPVQKPKT
FT                 EWRPSHYLNSNQSNTKCWRCYSSFHSPHDCFAKGKICNNCGNKGHISRACH
FT                 AAVERGRDQRMARSREETPQRIAHVGKSEEDTVDNDKVSDNVET"
FT   CDS           4437..7640
FT                 /product="Gypsy-125_AA-I_2p"
FT                 /translation="MNCVFLIDSGAQVNTFTERMFHKLIETPEFSKEVYNI
FT                 RDSTDRPLKAYATDKTIEVLATFDAYLYITEDRPILLEKFYVVKESRALLS
FT                 RATATRYSVLLLGLKVPIHPLQQTNETIRCIERISVVEKNKVYPKFNIPPV
FT                 KIFYDKSKPPCRNVFSNIPLAVKPLVEKRLEELVSANIIEPIVEGMDTSFC
FT                 SSMLIVPKGKDDIRLVVDLRGPNRYIYRTPFAIPTLEKILAELNGAKWFST
FT                 IDLSNAFFHMELDEESRHLTNFYTEFGMYRCVRLPFGLCNAPDLFQEALQR
FT                 KVLAGCKGCKNYLDDVLVFGATKAEHDENLAEVLSCLENHNVKLNESKCSF
FT                 GTQAAEFLGFTLTPEGWQINDEKVEAVKNFRKPTTCSEVKSFLGLITFVDK
FT                 FVPHRATKTEYLRTLASSDMFYWSDNEEKEFNYFKEEALTCIKRLGYFNAE
FT                 DRTELFVDASPIGLGAVLTQFNADGDPRIIACASKVLTVAEQKYPQTQKEA
FT                 LAVVWAVEKFSFYLLAKFFVIRTDAEANQFIFSSNHRLGKRAISRAESWAL
FT                 RLQPYDFSIERVPGNQNIADALSRLIPASQIDKPFDEDEDSHYLYALDAGC
FT                 MQLTWNEIETASENDNELALVRQAVISKKWPAELRSYEAQRKTLHTLGSLV
FT                 FKDDRTILPVSLRSKALQLAHQGHVGEVATKRIMRLHFWWPRMSAEVSRFV
FT                 RSCETCAQLSKRNPPVPLASRDLPNGPWEILQIDFLSVPSFGTGELLVVID
FT                 TYSRYLCVVEMKSLNASSTNSALCEVFHTWGCPIILQSDNGPPFQSTEFIQ
FT                 FWQNKGVEVRKSIPLSPQSNGCVERQNQGIIKALAASRLDGLNWRIALQSY
FT                 VHRHNTVVPHSRLCVTPFEMMVGWRYRGTFPSLWSPTCSGSPDKSELEERD
FT                 AEAKLASKTYADSVRGAKVSDIQVGDIVLLAQSKKSKTDPTFSLERYTVIA
FT                 REGAKVVVMSAAGIQYSRNIREVKKAPGSYAFNDPHSTDEFTRASGRDADD
FT                 GNEPNGEGPSDNTGHAVLMDGTTGSMPGDQNSESSSARNLRERTAINRPKR
FT                 FDDRYIYRVFC"
XX
SQ   Sequence 7830 BP; 2572 A; 1388 C; 1771 G; 2099 T; 0 other;
     tggcgcagtc ggcgggtaag taaaaattaa gtgcattgtt ctaaaggtaa agctcttgaa        60
     taaaaactga taattgtgag tgagtttaca cgtttcacac aacggtttca gtaagagttt       120
     gaataaaaac tgataattgt gagtgagttt acacgtttca cacaacggtt tcagtaagag       180
     ttactgtaaa ttttattgta gtgagacagt tcacacaaaa cgaatgtgag tgagttcaca       240
     aatgtttcat ataatggttc cagtaagaga gtttactgga aattttgttg tagtgagaga       300
     gttcacacaa aacgaatgtg agtgagttca caaaatgatc atataatagt tacagtaaga       360
     gagtttactg gaaactttct tgtagtgaga gagttgacac aaaacgaatg tgagtgagtt       420
     cacaaatgtt tcatataatg gttccagtaa gagagtttac tggaaatttt gttgtagtga       480
     gagagttcac acaaaacgaa tgtgagtgag ttcacaaaat gatcatataa tagttacagt       540
     aagagagttt actggaaact tttttgtagt gagacagttc acacaaaacg aatgtgagtg       600
     agttcacaaa tgtttcattt aatagttaca gtaagagagt ttactggaaa tttttttgta       660
     gtgagacagt tcacacaaaa cgaatgtgag tgagttcaca aatttatcat ataatagtta       720
     cagtaagaga gtttactgga aattttgttg tagtgagaca gttcacacaa aacgaatgtg       780
     agtgagttca caaatgtttc atataatggt tccagtaaga gagtttactg gaaattttgt       840
     tgtagtgaga gagttcacac aaaacgaatg tgagtgagtt cacagattaa tcatataata       900
     gttacagtaa gagagtttac tggaaacttt tttgtagtga gacagttcac acaaaacgaa       960
     tgtgagtgag ttcacaaatg tttcatataa tggttccagt aagagagttt actggaaatt      1020
     ttgttgtagt gagagagttc acacaaaacg aatgtgagtg agttcacaga tttatcatat      1080
     aatagttaca gtaagagagt ttactggaaa cttttttgta gtgagacagt tcacacaaaa      1140
     cgaatgtgag tgagttcaca aatgtttcat ataatggttc cagtaagaga gtttactgga      1200
     aattttgttg tagtgagaga gttcacacaa aacgaatgtg agtgagttca cagatttatc      1260
     atataatagt tacagtaaga gagtttactg gaaacttttt tgttgtgaga cagttcacac      1320
     aaaacgaatg tgagtgagtt cacaaatgtt tcatataatg gttccaggaa gagagtttac      1380
     tggaaatttt gttgtagtga gagagttgac acaaaacgaa tgtgagtgag ttcacaaaat      1440
     taccatataa tagttacagt aagagagttt acaggaaact ttcttgtagt gagacagttc      1500
     acacaaaacg aatgtgagtg agttcacaaa tgtttcatat aatggttcca gtaagagagt      1560
     ttactggaaa ttttgttgta gtgagagagt tcacacaaaa cgaatgtgag tgagttcaca      1620
     agatgatcat ataatagtta cagtaagaga gtttactgga aactttcttg tagtgagaga      1680
     gttcacacaa aacgaatgtg agttcacaaa tgtttcatac aatggttcca gtaagagagt      1740
     ttactggaaa ttttgttgta gtgagagagt tcacacaata cgaatgtgag tgagttcaca      1800
     aaattatcat ataatagtta cagtaagaga gtttactgaa aattttattg tagtaggaga      1860
     gttcacacaa aacgaatgtg agtgggttca caaaattaac atattatagt ttcagtaaga      1920
     gaatttactg gaaattttgt tgtagtgaga gctcacacta aacaaaagtg agggagttta      1980
     caaaattaac atataatagt tccagtaaga gagttattag aaattttgtt gtattgagag      2040
     agttcacaca aaacaaaagt gagtgagttc aaacatgttt catataatgg ttccagtaag      2100
     agagtatgct ggaaatatca ttgtagtgag agagttcacc caaatgagtc acataatggt      2160
     tttagtaaga gtttgctgga aatattgttg tcgtgggaga gttttcgcga aactaaaatt      2220
     tcagtaagtt tcttgtagct cccttgcttc acaagaaaaa aaaaactaga aaccagtttt      2280
     cttaaaagta tctattctga gaatataatt atgaaaataa ttatgaaaat gggtacttga      2340
     gcttatattc ttttctgtat cttcttcatt ctagaggatc caccaacaga aaagtcaaag      2400
     aaagcaaaca aactccaagc aatggctcgc cagttagcgg ccgagaaatc gaaaattaag      2460
     ctgctgaaaa agaagctaaa gtggagtcgg aacgaaaaca aactgctaat cgatcgttta      2520
     aatcaacaac cagctacaga ctcgacgagc ggaagttttg gattcggaga gggtaacaga      2580
     tttagcagca cgcgaaacat gacagaaacg gttcaggaca aagaacggga ggaatcatgt      2640
     aaggatgacg attcgaatcc atcagtcgaa aacccggaag ttacggagca catctcggcc      2700
     ggaataattc aggagaatga ttacggaaca caccgaattg gcactgcaga ggacggtcat      2760
     gaggaacaac cttttttgtc cagtgacgac gaatctcgta tcagaattgc gagagacaca      2820
     acaaaggaga gacaggagga ggttcgatca agcgttgtgc gtaccgtgac aggccaggat      2880
     gagtctaggt ttctttcgtc gatgaatcaa ctttcggtgg cttcgataaa tgtacccgaa      2940
     tgcaaaccag cagttgacgg agatatccat cggcaaacgt tcgagcaatg gaaggatctc      3000
     cttgtggact ccatgaatct agcgggcatt gatgacgaac gtacaatgtt cactgtattc      3060
     aaggtgaaag cggggattaa attgttggag atattcagga acacaaaatc ccaaaacagc      3120
     gattccgatc cacaagctaa acccttttcc aacgcaatgg accggctgaa atcatacttt      3180
     ggttcggggt cggatatttt gctgatgcga aggaaattag cattgatggc ccagcaagca      3240
     aacgaaacag atctgtcttt cgttacgaga gttggatcta cagctcggct atgtggatat      3300
     gacgaaggaa aagagtttga ggaggtcgca gctaccattg cagaacatgc tcgtgataga      3360
     gaagtacgag caacagccct gaaatcgtta agtaagaaag gatgctttac ggaccttgtg      3420
     gataaagtca gggagataga atcgatccga ttgaatgagg aatatgttat gcgaaaacaa      3480
     ggtaaagtaa gccatgccac ggttgctgca gttgcagcac cttatcagca tcgaaataaa      3540
     ttcccggagc gttatcagac acgaccaaaa ccttacaagc gaccagtaca gaaaccaaaa      3600
     acggaatgga gaccatctca ctatctcaac agcaaccaat caaacacgaa atgttggaga      3660
     tgctacagtt cgttccactc tcctcatgac tgctttgcca aagggaagat ttgcaacaat      3720
     tgcggcaaca aaggacacat tagtcgggcc tgtcacgctg cagttgagcg aggtcgtgat      3780
     caacgaatgg ccaggagtcg tgaagaaacg ccccagcgaa ttgcccatgt tggaaaatcg      3840
     gaagaagaca cagttgacaa cgataaagtg agtgataatg ttgaaactta gttatacact      3900
     gtaaacgatg acattttcac tcgcaaacat cacttgaact acggagaata tgattttttc      3960
     ttcaaccttc ttattatatt gacatgaatt cgaactgaac ttaatatgat aaatgttttt      4020
     ttttatcaag catataaaat cgctacggaa aaaaacttca taaaataaaa tgatattcga      4080
     acaattaatt gaaagattta ttattaataa caagaaaatg tagtgaaatg tcatcataat      4140
     tgaaatagag acaattggta acatgtatta tttgtcaggg tttaacgatc aggtcgacta      4200
     agcatggagc catggacaca gtcaaaagtt cgcttcggca ttggttggaa atagatacta      4260
     tatacagtat tggaaacgaa gatgttaaaa tccctcgtat gagcgctgag ttagtgcaac      4320
     gagtaagtaa tattgatgct ttaagtatgc gaggattttt agtaattcgt tctcattaaa      4380
     tacagactgc gttaagcgat ttcggcgacg gatacatcac agttacggta gctggtatga      4440
     attgtgtttt tctcatagac tcaggtgctc aagttaacac attcaccgaa cgcatgttcc      4500
     acaagttaat tgagacccct gagttcagta aggaagtcta taatatcagg gattccacag      4560
     accgaccact caaagcatac gcaacagaca aaacgatcga agtacttgca acgtttgatg      4620
     cgtaccttta cattaccgaa gatagaccaa tacttctaga gaagttttac gttgtcaagg      4680
     aaagtcgagc acttctcagt agagcgacag caacgagata cagcgtattg ctacttggtc      4740
     tgaaggtacc tatccatcca ttgcaacaga ccaacgaaac aattcgttgc atcgaaagaa      4800
     tttctgtggt ggagaagaat aaggtatatc ccaaatttaa tatccctcca gtgaaaatat      4860
     tctacgataa atcgaaacct ccgtgcagga atgtattctc aaacattcct ctagcggtaa      4920
     agcccttggt tgagaaaagg ttggaagaat tggtatcggc caatatcatt gaacccattg      4980
     tcgagggcat ggacacatca ttttgttcgt caatgttgat cgtcccgaag ggtaaggacg      5040
     acatacggct tgtcgtcgac ttaagagggc caaatcgata tatctaccgt acaccgtttg      5100
     caattccaac tttggagaaa atactggcgg agctgaatgg cgcaaaatgg ttttcaacca      5160
     tcgatttgtc gaatgctttt tttcacatgg agcttgacga agaatccaga catctcacta      5220
     atttctatac ggaatttggt atgtaccgtt gtgtgagatt accctttgga ctatgcaatg      5280
     ctcccgatct tttccaagag gcgcttcaac gtaaagtact ggctggctgc aaaggatgta      5340
     aaaattatct cgacgatgtg cttgtcttcg gagccaccaa agctgaacac gacgagaatt      5400
     tggctgaagt gctttcgtgt ttggaaaatc ataacgtcaa actaaacgag agcaaatgtt      5460
     cgtttggtac tcaggcagct gaatttctgg gattcacgtt aactccagaa ggttggcaaa      5520
     tcaacgatga aaaagtagag gcagttaaaa attttcgaaa acctacgaca tgctccgagg      5580
     taaagagctt cttgggattg ataacctttg tcgataagtt tgtccctcat cgtgcaacaa      5640
     agacagaata cctccgtact ttggcctcat ctgatatgtt ttattggtca gacaatgaag      5700
     aaaaagagtt caactacttc aaggaagaag ctctcacatg catcaagaga ttgggatatt      5760
     tcaacgcaga agaccgaaca gaactatttg tcgacgcttc cccgattgga ctgggtgcag      5820
     tcttgaccca atttaatgct gatggggatc caaggattat cgcctgtgca tccaaagtat      5880
     tgacagtagc cgaacaaaaa tacccgcaaa cgcaaaaaga agcgttggca gttgtatggg      5940
     cagtagaaaa attttcattc tacttgctgg ccaaattctt tgtcattcgt acggatgcgg      6000
     aagccaacca gtttattttc agctcaaatc acagattagg caaacgtgca atatccagag      6060
     cggagagttg ggcattacgt cttcaaccat acgacttctc gattgaacgt gttccaggga      6120
     atcagaatat tgccgatgcc ctttcaaggt tgatcccggc ttcacaaata gacaaaccat      6180
     ttgacgagga tgaagacagt cactatctct atgccctaga tgcaggctgc atgcaactga      6240
     cgtggaatga aatcgaaacc gcttcagaaa atgacaacga gttggcatta gtcagacaag      6300
     ctgtaatctc aaagaagtgg ccagcggagc tgcgtagtta cgaagcgcag agaaaaacct      6360
     tacataccct tggttcgttg gtattcaaag atgatcgaac gattcttcca gtgtcactcc      6420
     gaagcaaagc ccttcaatta gcgcaccaag gtcacgttgg agaagttgct actaaacgta      6480
     tcatgcgctt gcacttttgg tggccacgga tgtcggccga ggtatcacga tttgttagaa      6540
     gctgtgagac atgtgcgcaa ttatcaaagc gaaatcctcc tgtgccgctg gccagcagag      6600
     atttacctaa tggaccatgg gagattttgc aaattgattt tctttccgta ccatcttttg      6660
     gaaccggaga acttctcgtc gtaatcgaca catattccag atatctgtgc gttgtggaga      6720
     tgaaaagcct caatgcaagc agcactaaca gtgctctctg tgaagttttt catacctggg      6780
     gatgccctat cattttgcag agtgataatg gcccaccctt tcaaagtact gaatttatcc      6840
     agttttggca aaacaaaggg gttgaagtac gaaaatccat accactgagt ccccaatcga      6900
     acgggtgcgt tgaaaggcag aaccaaggca tcatcaaggc tttggctgcc tccaggcttg      6960
     acgggttaaa ttggagaatt gccttgcaaa gttatgtcca tcggcacaat acggttgttc      7020
     cccactcgag actatgcgta acacctttcg agatgatggt tggatggaga tatcgtggga      7080
     ctttccctag tctgtggtcc cctacttgta gcggaagtcc tgacaagagt gaattagaag      7140
     agagggacgc agaagctaaa ctggccagca aaacgtacgc tgactctgtt cgtggagcta      7200
     aagtttctga catccaagtt ggcgatattg tgcttctagc acaatctaaa aaaagcaaaa      7260
     cagatccgac gttttcactg gaacgttata cggtgatcgc cagagaaggt gcaaaggtgg      7320
     tcgtcatgag cgcagctgga atacagtatt cgcgaaacat acgggaggtg aaaaaggctc      7380
     ctggaagtta tgcattcaat gatccgcatt caaccgacga attcacgaga gcttctggaa      7440
     gagatgctga cgacggtaat gaacctaatg gcgaaggacc atctgataac accggtcatg      7500
     cagttcttat ggatggaaca acgggatcta tgcctggaga tcaaaattct gaatcttctt      7560
     cagctaggaa tcttcgagaa agaaccgcta tcaaccgtcc taaacgcttc gatgaccgct      7620
     atatttaccg cgttttttgt taaagatgaa ctctgaaaat acaagaagaa atgatcgttt      7680
     tatgattaaa gataagagaa actgaaaatc agcttataaa taaacaagtg aattgggaaa      7740
     ctaggaataa aacgccaagt tttttgttta tcatgatact atcacaactc gctgctaccg      7800
     atcgcaaaac agagtagaga agtgggcgaa                                       7830
//
ID   Gypsy-125_AA-LTR repbase;    DNA;    INV; 505 BP.
XX
AC   AAGE02022342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-125_AA_;
KW   Gypsy-125_AA-I; Gypsy-125_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-505
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022342; Positions   46542   46038.
XX
SQ   Sequence 505 BP; 173 A; 79 C; 120 G; 133 T; 0 other;
     tgtagtaaat aactcagcag tctagggaga aataaacaaa ctattacata cttacagtta        60
     actgctgctg tcgcactagc tgagaaacat tctgacccgg tgaaagagta aataatgaaa       120
     atcgtccact gaactatatt cttgtttgac agctggtggc gatgaaacat ttcgagcgaa       180
     agcttgggcg aaatcgaaaa ggaaatcttt cattgataca ccgtaaaaag aaataagtgg       240
     tttctagggt tgagctttgg aaatgttcga aaatagaacg gacgagtctg aacgcattcg       300
     aaaaacgcta attaagccgg aaaggacgcg aagctttcgc aagttggatt tcgagaggat       360
     cgagatcagc attcagtgat cgaaatttgt cgaggacagt cgcgtttatt tttggagttc       420
     gattgaaaaa aagttgtgac cacgtttctc gaaaagtgaa gttttgaata ttggaaaatg       480
     ttgaactatc aatgggaata cgaca                                             505
//
ID   Gypsy-126_AA-I repbase;    DNA;    INV; 4108 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   27-DEC-2018 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-126_AA_;
KW   Gypsy-126_AA-LTR; Gypsy-126_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4108
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-4108
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (27-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..4052
FT                 /product="Gypsy-126_AA-I_1p"
FT                 /translation="MEKATITPFDVTDTASIASRWTKWKRSLQLCLEVNCV
FT                 ALPSRKRSYLLHFAGPEVQDIFYNIEGHDADPPLGSDVFTEAIRLLDEHFA
FT                 PLNNIPYERCVFRKMTQQENEPVEKFIHRLRDQGRLCDYGAALEMRITEQI
FT                 FDNCVSDTLREAILKKKLMTVQEIAEEGRVLETVKRNRDQMKKTVEEEQLS
FT                 LVKKQSREEICFRCGIVGHFANDKKCPARSKMCDKCQIVGHFKKMCKTKLK
FT                 SGKVSKRNQKINQVLTQDIVSDSSSEGTDSDDVQQVYANGSGLDKTTCFIG
FT                 GVKTEWIIDSGAHVNVITRGTWKSLKEQGCVVSSECKSDKVLRVYGDGKLN
FT                 VLKIIKADISTRDKRVHHEVCVVDSEKGANLLSRATSIELGLLEIRGNVLS
FT                 VDDSGEPPIGKLKNVQVVIKLDPNIPPVQQSCRRLPIPLKALVDEKLADLL
FT                 KQDIIEPAPLNISWASPLVVTPKDGGRTVRLCVDMRRANKAIIPEKHPLPT
FT                 FEEIMPHLEGCKVFSKIDLVKAFHQIELSPESRDITTFVTQDAYYRYKRLM
FT                 FGMKVAPEVFQRCIERVLKGLKGVKVFIDDVLVFGSSKEEHDIRLRAVLDR
FT                 LKENGLTINEAKCEFGQSMVVFMGHQLSANGILPTNEKVSAIQSFRRPQTA
FT                 SEMRSFLGLVNYVGKFIPNLSTLTAPLRDMIVKGVKFHWSREAKVSFNEVK
FT                 RAMSNPNHLAFYSPRYKTTLITDASDHGLGAVLLQTNNSKTRPVSYASKSL
FT                 SKTEKNYSTLDKEALAIVWATERFEMYLRGLDFSILTDHKPLIHIFSDSSC
FT                 PNKRQERWVLRMQSYRYSVEYVPGEVNIADPLSRLCDLADMKTYDKRTEDA
FT                 LYSIVEVNIPSAITMTEMIRSSQDDPEFAKVRKALNDDRWEDLRGFAPFKS
FT                 ELCFSKDLLLRKDKIVVPGDLQEAVVRLSHTGHPGKEKMKRRLRTAVWWPG
FT                 LDSDVEQACRSCVECQMVGAANKPEPLRIREIPSAPWVHLSADFLGPLPNG
FT                 KYIFVLVDLYSRFVVAEFMTRTLSADVIRVLRQVFTRMGLPFVLTTDNAKN
FT                 FSSQELKDYCVDYGIKLTHTTPYWPCANGEVERQNRSLLKVLKISQQRSTN
FT                 LEEALQEYLYMYSVTPHSVTGVPPATLMFGRRFRDLFPHMQDEVTFDDEMR
FT                 DKDATVKYRAKEYRDKRVGAKETSVNVGSEVLMKNMQPTNKLSPTFLPVPA
FT                 TVVEKTGSMATVQTNTGQQFKRNTSHLKVYHPTTPKTADSLEVKTRKEPIE
FT                 GTEPMIEHQDRPRRSVSVPKRFDDYCLK"
XX
SQ   Sequence 4108 BP; 1239 A; 821 C; 1025 G; 1023 T; 0 other;
     tttttggcga ctaatgatgg gatctcgcga ttaaattcga taaaagtttg cttaaatgcg        60
     ggaagtatcg gtttaaatac gaataaagaa gatagttgta tcggccgcga ttgttttggc       120
     acgaaacggc gtcgtaatcg gcaaactttt cgaggtcata tggaacataa cctcggctag       180
     tggaaatgga gaaagcaaca ataacacctt ttgatgtgac ggacacagca tctatcgcga       240
     gccgctggac gaagtggaag agatctctcc agctttgctt ggaagtgaat tgtgttgccc       300
     ttccttcacg caagcgttcg tatttgttgc attttgccgg gccagaggtg caggatattt       360
     tctacaatat cgaaggacac gatgcagatc ctcctctggg atccgatgtg tttacagaag       420
     ccattcgttt gcttgacgag cattttgctc cactcaataa cattccgtac gaaaggtgtg       480
     tgttcagaaa gatgacgcaa caagaaaatg aaccggttga gaaattcatc catcgccttc       540
     gagaccaggg ccgcctctgc gattatggag ccgctttgga aatgagaata acggaacaaa       600
     ttttcgacaa ctgtgtgtcc gacactttga gagaagcaat attgaagaaa aagttgatga       660
     ctgttcaaga aattgctgag gaaggccgag tgttggaaac ggtgaaacgg aatcgagatc       720
     aaatgaagaa aacagtagaa gaagagcaac tgagtttggt gaaaaaacaa agccgggaag       780
     aaatttgttt tcgttgtgga attgtgggtc attttgccaa cgacaagaag tgccccgcca       840
     gatcaaaaat gtgtgacaaa tgtcaaattg ttgggcattt caagaagatg tgtaaaacca       900
     agctgaagtc aggaaaagtg tcgaaacgaa atcagaaaat taatcaggta ctgacgcaag       960
     acattgtttc ggattcatca agtgagggaa cggattccga cgatgtgcag caggtatatg      1020
     ccaatggatc tggattggat aaaacgacgt gtttcattgg aggtgtaaaa acggagtgga      1080
     tcattgactc cggtgctcac gtcaacgtga ttacgcgagg aacgtggaag tcgttaaaag      1140
     aacagggatg tgtagtgagc agtgaatgca aatcagacaa agtgcttcga gtctacggtg      1200
     atggaaaact gaacgtactt aagattataa aagcggacat ttcaactcga gataagagag      1260
     tgcaccatga agtttgtgtt gttgacagtg aaaaaggagc caatctgtta agccgagcga      1320
     cttctattga actcggtttg cttgaaattc gtggaaatgt tctcagtgtt gatgacagtg      1380
     gtgaaccacc gattggaaaa ctgaaaaatg tgcaagtggt tatcaagctc gacccaaaca      1440
     taccgcctgt gcaacagtcg tgcagacgtc tgcctattcc gttaaaagca ttagtggatg      1500
     aaaaactcgc ggacctgcta aagcaagata ttatagagcc ggcgccactc aatatcagtt      1560
     gggcgtctcc gcttgttgta acaccgaaag acggtggacg taccgttcga ctttgtgtgg      1620
     acatgcgtag agcgaataaa gcgataatcc cggagaagca ccctctgcca acattcgaag      1680
     aaatcatgcc tcacttggaa ggatgcaaag tgttcagcaa gatcgatttg gtgaaggcat      1740
     ttcatcaaat tgagttatca cccgaatcgc gtgacattac cacctttgtc actcaagatg      1800
     cgtactaccg ttataagagg cttatgttcg ggatgaaagt ggctccggag gtattccaac      1860
     gatgcatcga aagagtgctg aaaggactaa aaggagtgaa ggtgtttatt gatgatgtgt      1920
     tggtgtttgg atcgtccaag gaggagcacg atattcgcct gagagcagtg ttggaccgac      1980
     ttaaggaaaa tggactcacg atcaacgagg cgaaatgtga atttggacaa tcgatggtgg      2040
     tattcatggg acatcagctg tctgcaaatg gaattcttcc aacaaacgaa aaggtcagtg      2100
     caattcagag cttccgtcgt cctcaaactg ccagcgagat gcgcagcttt ttggggttag      2160
     ttaattatgt agggaaattt atccctaatt tgtcgaccct caccgctcct cttcgcgata      2220
     tgatagtaaa gggtgtgaag tttcactggt cgagagaagc aaaagtatcg tttaacgagg      2280
     taaagcgagc gatgtcgaac cccaatcatt tggctttcta tagtcctcgt tacaaaacca      2340
     cattaattac cgatgcgagt gaccacggat tgggtgcggt tttgttacaa acaaacaact      2400
     cgaaaaccag accggttagt tacgccagta aaagcctctc taaaaccgaa aagaattatt      2460
     cgacgttaga taaagaagcc ctcgccatcg tttgggcaac cgaacgtttc gaaatgtatc      2520
     tcaggggatt ggatttttcg attctcactg accacaaacc gctaattcac atttttagcg      2580
     actcgtcctg tccgaacaag cgtcaagaga ggtgggtcct tcgtatgcag tcatatcggt      2640
     actccgttga atacgtccct ggtgaggtga atattgcgga cccgttgtct aggttgtgcg      2700
     atctggctga tatgaaaacg tatgataaac ggaccgaaga tgcgctgtat tcgatagtgg      2760
     aagttaacat accgtctgcg ataacaatga ccgaaatgat tcgctcctcc caagatgacc      2820
     cagagttcgc aaaagtacga aaggccttga acgatgaccg atgggaagac ttgagaggat      2880
     ttgcgccgtt caaatccgaa ctatgttttt caaaagatct tctgctgcgt aaggataaga      2940
     tagtcgttcc tggtgatctc caagaagcag tggtacgatt gtcacacaca gggcatcctg      3000
     ggaaagaaaa aatgaaacga cgtctacgaa cagctgtatg gtggccaggt ctagattcgg      3060
     atgtcgagca ggcatgcaga agctgtgttg aatgtcagat ggttggcgct gcaaataaac      3120
     cggagccatt acgaattcgt gaaataccat cagctccttg ggtacatctg agtgcagact      3180
     ttttggggcc tctcccgaat ggcaagtata tttttgtact ggtggacctc tacagtcgat      3240
     tcgtggtagc cgagtttatg acccgtactc tgtcggctga cgttattcga gtattacgcc      3300
     aggttttcac aagaatgggg ttgccttttg tgctgacgac tgataacgct aaaaatttct      3360
     caagtcaaga actcaaagac tactgcgtcg attatggaat aaagctaact cacaccacgc      3420
     catactggcc atgtgcaaat ggcgaggttg agcggcaaaa ccgctcactg ttgaaagtac      3480
     tcaagataag ccaacagcga agtacgaatt tagaagaagc tcttcaagag tatctttata      3540
     tgtactcagt aaccccacat agcgtcaccg gagttccacc cgcaaccctg atgttcggac      3600
     gaagatttag ggacctattt ccccatatgc aagatgaagt aacgttcgat gatgaaatgc      3660
     gagacaagga tgcaactgtc aaataccgag caaaagagta ccgtgataaa agagtcggag      3720
     ctaaagaaac atcagtcaat gtgggaagcg aagtgctcat gaagaacatg cagcctacaa      3780
     ataaactatc gccaactttt ctgccagtac cagcaacggt tgtggagaaa actggtagta      3840
     tggcaactgt gcagacaaac accggacagc agttcaagcg aaacacatct catcttaagg      3900
     tttatcatcc aactacaccg aagacggctg actcattgga agtgaaaacc cgtaaggaac      3960
     cgattgaagg caccgagcct atgatcgaac atcaagaccg acctcgtaga agtgtatcgg      4020
     tgccgaagcg ttttgatgac tactgtttga aatagttaga tttcttttgt tactgttttt      4080
     aacattttca tattgaaaaa gagagata                                         4108
//
ID   Gypsy-126_AA-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   27-DEC-2018 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-126_AA_;
KW   Gypsy-126_AA-LTR; Gypsy-126_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-124
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-124
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (27-DEC-2018).
XX
DR   [3] (Consensus)
XX
CC   >99% identical to the consensus.
XX
SQ   Sequence 124 BP; 38 A; 21 C; 34 G; 31 T; 0 other;
     tgttgtggtg taaaactgaa tcctggcagc actggatgcg ggactaccaa catgtagggg        60
     aaaggatctg gagtaataaa aacgtactgg taaagttcac acgtgtagtg tttgattccc       120
     aaca                                                                    124
//
ID   Gypsy-127_AA-I repbase;    DNA;    INV; 6243 BP.
XX
AC   AAGE02017298;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-127_AA_;
KW   Gypsy-127_AA-LTR; Gypsy-127_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017298; Positions  123135  116893.
XX
CC   'CATGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           674..2071
FT                 /product="Gypsy-127_AA-I_2p"
FT                 /translation="MSNKGKYVRRIVDYDSDDDEDSPIGCGDMTDTEGVEN
FT                 HETCNSDSDESSIDIGTRTDDTRNDKSDSNSDCETSSSSSYSTRSPSCSPS
FT                 KSPSPVKSTTQETPSKAELEHATTERFDRMEKMIANMNNALARFQAGAGPT
FT                 PDDDAELSWKLSNDVDQRAGGESSSSNIRWDHLKPFPSGIASCKMWEEWNS
FT                 YVENFELAASLSNVNDPVKRTQLLFLSMGNELQGIVKAAKLRPSLSNPNCY
FT                 RTFVTNIQNYLRKMTDTAAEHEEFSRMKQEIGESVVAFHARLTSKAKACKY
FT                 SVDEDRFVRAQLLAGLRNRELVRQARVYGHDTEFIVQSATRDETFESERKQ
FT                 QEGNHVLEIRSNRNEHFNRKRSVRGSGTGGPPVRQQRRGDTNRRPQGQRSR
FT                 CTRCSLFNHRNGQCPALTRNCNECGKRGHYAAACRQKQVNALQNKQNFDSF
FT                 RDKSDVPDDDKQSNQQVTNDY"
FT   CDS           3085..5673
FT                 /product="Gypsy-127_AA-I_1p"
FT                 /translation="MEDQGVIEKVTSAPGWISGMSAVAKGRNDFRLVVNMR
FT                 APNRANHREFFKLPLLEEMRVKLHGAKYFTKLDLQNAFYHLELSEESRDLT
FT                 TFMTEDGMYRFTRLMFGVNCAPEIFQREMVRILKEVGDYTIVYIDDILIFS
FT                 DTLEGLHATVGKVLQILRDNHLTLNTSKCEFDRTRLQFIGHELDQEGFHID
FT                 NEKVKSVQNFREPTTLSELRSFLGLASYLSPYLKNFADISSPLWTATTTKA
FT                 WLWGLEQKKAFELVKQHIIDCTVSLGFFSEHDKTVLYTDASPVALGAVLVQ
FT                 EGENQSPRIISFASKSLSSTERKYAQNQREALGVVWAVEHFSYFLLGRRFT
FT                 LRTDAQGVTFIFNRSREDSRRALTRADGWAIRLSPYHYDIEYVRGIDNIAD
FT                 PPSRLYKGEDDAPFDDENSPWEIASLEANSVEFLTEAEIKSATDQDETLQQ
FT                 VMKSLKTGVWSESLRRYRTVENDLYILNGIIVKTGCAVVPKALQTHALEVA
FT                 HEGHPSIAKTKSILRQRVWWPGMPKDVTSWVQSCETCCINGKPERTTPMER
FT                 VFAPKVPWNTVALDFNGPYIKFGGVLILVIVDYKSRYVIAKPVKSTKFECV
FT                 KKVLDDVFQNEGFPKGIKTDNGPPFNGQDFAEYCNKRDISITFSTPLFPQQ
FT                 NGLAESYMKLINKAMAVATTNKTNYVDELKKAVNAHNAAAHSITKVPPEEV
FT                 MYGRKIKRGLPLLQHGKSDFDEDLLQCRDREAKLAGKQREDSRRGARECKV
FT                 KPGDEVVIERPNRTKGDSRFSPTRYTVLEERNGSLILNDKHGKVSKRHVSQ
FT                 TKRVQPWRDVERDSSQYSGPPTSTLQQPNEQPSRALVRPARERRTPGFLND
FT                 YVRVIGIDGE"
XX
SQ   Sequence 6243 BP; 1985 A; 1366 C; 1418 G; 1474 T; 0 other;
     atggcggatc ctgccaggtg ttgcactttt tgttgtaaca caaacataga accattatct        60
     aataaaatta aaacagatgg ggaaagggac cagtcggagc tgaagcagac gacatgcatt       120
     tttgtttgac gatttcaaga aaaaatcttg gaagattttt tcgttccaca aagtgaggtt       180
     attcggaatg agagaccaaa gcgagcaaaa attgaaaata ccctgagtgc actagtgatt       240
     accaacagga aaagctctat ccaaacaatg gcaccgagcg gatcttaagt atcgcgctga       300
     gcgagctaga ataagctgcg ctgattccat taaaatcgat tgtgaagcgg aacataagta       360
     tcgcgctgag acagttaact ttatagagcg gatcaaaaga tcgcgctacg acaatttaga       420
     gtcatcgagc gagtcggaaa gactgcgcca aaatgtatcc atttttaagc gggtcaggag       480
     caccgcgctg ataagattaa cagaatggag cgtgtcgaac tggcagcgct gagcaaatag       540
     actacatgca tagtggagcg gatttcaaaa tcgcgctcat ggaaaaaaaa ataataaaac       600
     taattgcgat tatttttctt gtaccctctc tagacagaaa caaacttccg aaatttagcg       660
     aaaacagaaa agcatgtcca ataaagggaa atatgtccgt cgtatcgtcg actacgactc       720
     agatgacgat gaggatagcc cgattggttg tggtgacatg acagacacgg aaggagtgga       780
     aaaccacgaa acgtgtaaca gcgactctga tgaatcatcc atcgacatcg gcacaagaac       840
     cgacgacact cgtaatgaca aaagcgattc caactctgac tgcgaaacat caagttcatc       900
     ctcgtattca acgagatctc catcctgttc tccatcaaaa tcaccgtcgc ccgttaagtc       960
     aacaacacag gaaactccaa gcaaggcgga actggaacac gccaccaccg aacgattcga      1020
     ccgcatggaa aagatgatcg cgaatatgaa taacgccctg gctcggttcc aagcgggagc      1080
     cggaccaaca ccagatgacg acgccgaatt aagctggaag ctatcgaacg acgtagacca      1140
     acgcgcaggt ggtgaaagct catcgtcaaa tattcgttgg gaccacttga aaccattccc      1200
     tagtggtatt gcatcgtgta agatgtggga ggagtggaac agctacgtgg aaaacttcga      1260
     gttagcggca tccctaagca acgttaatga ccccgttaaa agaacccaat tgctattcct      1320
     ttctatgggt aacgaactac aagggatcgt caaagctgct aagttacgtc caagcttgtc      1380
     caatcccaat tgttacagga catttgtgac caacattcaa aactacttac ggaagatgac      1440
     cgacaccgcc gccgagcatg aggagttctc gagaatgaag caagagatcg gcgaatccgt      1500
     ggtcgctttc catgcgcgat tgacatccaa agctaaggca tgtaagtaca gcgttgatga      1560
     ggacagattt gtacgggcgc agcttctagc aggcctccgg aatcgagagc ttgtgagaca      1620
     agctagagtg tacgggcacg atacggagtt catcgttcaa tcagctactc gcgatgaaac      1680
     gttcgaatct gagagaaaac agcaggaagg aaaccatgtg ctggaaatca ggagcaaccg      1740
     aaacgagcat ttcaatcgga agcgttccgt caggggttcc ggaacgggtg gaccaccggt      1800
     aaggcaacag cgtagaggtg acaccaaccg acgaccgcaa ggacaacgct cacgatgcac      1860
     cagatgctcc ctctttaacc acaggaacgg acaatgtcca gcgctaaccc ggaattgcaa      1920
     cgagtgtggc aaacgtggcc attacgcagc ggcgtgtcga cagaagcagg tcaatgcttt      1980
     gcagaacaag caaaatttcg acagcttccg tgataaatct gacgtgccag acgatgacaa      2040
     gcagagcaat cagcaggtaa caaatgatta ctaatttgta ttatcatttt ccctaaatca      2100
     tggcacacta agaatgattt aaaactaaac catcgatacg ttgaataaaa cacataataa      2160
     ataaattata tttcctttat tttctgaatg tcacatttta tgcaaatcag ctggttaatg      2220
     ccctttcact cgaggacgtc atagttacct gttcaattgg atcatctact cccattcgat      2280
     tcctcattga ctcgggagct gacgtaaatg ttatcggagg aaatgattgg gctttactga      2340
     cacgagaaaa gcaaatgggg aaagcaaaat tagaaatcat gaggacaatc gataaaaagt      2400
     tacatgcata cggaagtcaa gaaccaatgg ttgtcgagtg cacaatcaaa gccgaaatta      2460
     ctactccagg atccatccaa cctgctatag ccgccgtctt ccacgtgatt ctcaaaggaa      2520
     caagatcact gctaggacga tcgacgtcga gtgacatggg attattgcac ataggaagta      2580
     aaatcaacaa ctgtgaacta cggagcaaca accaatttcc aaaaatgcca gggttgaagg      2640
     tcaaatttag cattgatcag acggttccac ccacaaaaag cgcgtattat aatgtaccag      2700
     cagcgtacag gtaagtttaa acgaaaaaca ttggcagtat acatgattga tactctccca      2760
     aaatgcattt aaggtgaaac tgtttttctc taggatccga aatccaaaaa tgcataaaag      2820
     gattagttcg aagaagattt caatgcagaa ccatatgtgt aattgtaatt gattcattgg      2880
     catttgttcc ctaggtaaca cgaaacaata ttgccgttat ggctgcattg ttggttcgca      2940
     aaacgtttca ccttaacata catgcattag cagtcatgct tccttttgtt catcaaacac      3000
     caagtcagtt gcctatcaat tacagacagt ctttacagtt ttgatgatgt ttacagggaa      3060
     gcagcgcgac aaagactgcg agacatggaa gaccaaggag tgatagaaaa agtaacatcc      3120
     gctcctggtt ggataagcgg tatgtcagcc gttgccaaag ggcggaatga tttccgcctt      3180
     gtagttaaca tgcgcgcccc caaccgagcg aatcatcgcg aattcttcaa acttccttta      3240
     cttgaggaaa tgcgagttaa gctccatggc gcaaaatatt ttacgaagct cgatttgcaa      3300
     aacgcttttt atcatctgga attgtccgaa gagtcgcgcg atctgaccac ctttatgacg      3360
     gaagatggca tgtacagatt caccagactc atgtttggcg ttaactgcgc gccagaaata      3420
     ttccaacgtg agatggtcag aatcctgaag gaggtcggtg attataccat cgtgtatatc      3480
     gacgacatct tgattttttc ggatacgctt gaaggtctac acgcaactgt aggcaaagta      3540
     ttgcaaatct tgagagacaa ccatctaacc ctaaacacat cgaagtgcga attcgatagg      3600
     accaggttac agttcatagg tcatgaactc gaccaagaag ggtttcatat cgacaacgaa      3660
     aaagttaaaa gcgtacaaaa cttcagagag cctacaacac tgtcagagct tcgtagcttt      3720
     cttggactgg cgtcgtacct gagtccatac ttgaaaaatt tcgctgatat ctctagtcct      3780
     ttgtggactg cgacaactac taaggcatgg ttatggggat tggagcagaa gaaagcgttt      3840
     gaattagtca aacagcatat catcgattgc actgtatcat taggtttctt ctcggaacat      3900
     gataagacag tactatatac agatgcttcc cctgtcgcat tgggagctgt cctagtgcaa      3960
     gaaggagaaa atcaatcgcc gcgcataatc agctttgcat ccaagtcact ctcatcaaca      4020
     gaaaggaaat acgcgcagaa ccaacgggaa gcattaggag ttgtgtgggc ggtggaacat      4080
     ttttcctact tcctacttgg cagacgcttc acactccgta cagatgcgca aggggtcaca      4140
     ttcatcttca atagatcacg ggaagattca agacgagcat tgacgcgtgc tgacggttgg      4200
     gctatcagac taagcccgta tcattacgat attgaatatg tccgaggtat cgataatatt      4260
     gccgaccctc catctagact ctacaagggt gaagacgacg ctccgttcga cgatgaaaac      4320
     agtccgtggg aaatagctag tcttgaggcg aattcagtcg agttcctaac ggaagcggaa      4380
     ataaagagtg ctaccgatca agatgagaca ttacaacaag taatgaagtc actaaaaaca      4440
     ggagtgtggt ctgaaagctt gaggagatat cgcacggttg aaaacgattt atacatcttg      4500
     aatgggatca tcgttaaaac tggatgtgca gtggttccaa aagcactaca gacacatgct      4560
     ctggaggtag cacacgaagg ccacccatcc atagcaaaaa ctaaaagtat tttgcgacaa      4620
     cgcgtttggt ggccaggcat gcccaaagac gtaactagct gggtacaatc gtgcgaaaca      4680
     tgttgtatca atggcaagcc agagagaaca acaccaatgg aacgggtatt tgctccaaaa      4740
     gtgccttgga atacagttgc cctggatttc aatggccctt acatcaaatt cggcggagtt      4800
     ctcatcttag tgatagtcga ttataaatca cggtacgtca tcgccaaacc cgtcaaatca      4860
     accaaatttg aatgcgttaa gaaagtcctt gatgacgtat ttcagaacga agggttcccc      4920
     aaaggcatca aaacggacaa tgggccgcca ttcaatggac aagacttcgc ggaatattgc      4980
     aacaaacgag atatttcaat aactttttct acgccactct ttccgcagca gaacggcttg      5040
     gcggaaagtt atatgaaatt gattaataag gctatggcag tggcaactac caacaaaacg      5100
     aattatgtcg atgaattgaa aaaagcagta aacgcccaca acgcagctgc tcacagtatc      5160
     acaaaggttc cacctgaaga ggtgatgtac ggccgaaaaa tcaagcgtgg actgcctctg      5220
     cttcaacacg gtaagtctga ctttgacgag gaccttctac aatgcaggga tcgtgaagcc      5280
     aagttagcgg gaaagcagcg tgaagattcc cggcgaggtg ctcgcgaatg taaagttaaa      5340
     ccgggggacg aagtggtcat cgaacggcct aatcgcacaa aaggagattc tcgtttttct      5400
     ccgacacgat atacggtgct ggaagagcgg aacggcagtc tcatcctcaa tgataagcat      5460
     gggaaagtct ctaaacgaca cgtatcccaa acaaagaggg ttcaaccatg gcgcgacgtc      5520
     gagcgtgatt catcacaata ttccggacca ccgaccagta ctcttcagca accaaatgag      5580
     cagccctcac gtgcattagt ccgaccagca cgcgaaagac gaacaccagg attcctcaac      5640
     gattacgtga gagtgatcgg aatcgatggg gagtaatact tcgtcggtaa taccgcaaac      5700
     ttgacctgaa ataaaatgaa aatgaattcg aaaatgtaaa tattgaactg caccatcatt      5760
     tactcaccgt cggtatagaa caaatcacaa aggcaaacat taaaggaaaa gaacggaatg      5820
     cagcagtaat gttttttcgc ggagataaac ttttgttgtt gttgaccgtc cgactttgac      5880
     aacgcatcaa caacatcctt ttcttgcttt tctcccttct tcactctttc gaccgatttg      5940
     acattttgca gcgagacgcg cacccaaaag ctgcccctgc agcatattat gttgacaaac      6000
     ttgccgaggg gtgatgttcg gaaggtgagt aacacacacg gaaagaaaaa aggtactaaa      6060
     tttgattaga cttgcacaat gtgcaagcat tttttttctc tttcgtacat ctcattctgg      6120
     ttgtctttgt gcatttgtga gatatattag tcgaagatta tttcttccag attggctgta      6180
     aacaagttaa aagcacatgt taaaaaaatc aactttattt tattttccga agaggaagtg      6240
     aga                                                                    6243
//
ID   Gypsy-127_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   AAGE02017298;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-127_AA_;
KW   Gypsy-127_AA-I; Gypsy-127_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017298; Positions  116892  116660.
XX
SQ   Sequence 233 BP; 61 A; 63 C; 47 G; 62 T; 0 other;
     tgtgtggtac acgattagac actcggaaag tatataccat agtgtagcgc atgctgaaca        60
     tataatagca accctatgta ttggcactca ccgtgagcac ccccaataca ggctcttgct       120
     tgcaaccgcc attacatcgt cctctttcgg ctttctacca gcaagcaggt aagacgtgca       180
     gaatcgtgct aagctacgtg gtcccttttc ccgcaatgat ttagcatttc aca              233
//
ID   Gypsy-128_AA-I repbase;    DNA;    INV; 6675 BP.
XX
AC   supercont1.366;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-128_AA_;
KW   Gypsy-128_AA-LTR; Gypsy-128_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6675
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.366; Positions  585916  592590.
XX
CC   Positions [5024-5500] - Integrase core
CC   'ACAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           486..2681
FT                 /product="Gypsy-128_AA-I_2p"
FT                 /translation="MDLQTMYASMDVSHLSVDEVEYELLIRNILFHFDEHE
FT                 SIKRRKLKDKLKSEKELKTFAFSQPWRSLDEELVTISLKLKVIGGLLENPK
FT                 TDARQRQKLKTRLVHYRVRNYILSKASGADKCRNEIVKVGRQATELFRRFF
FT                 PEVNEADVHSEDSERLESDLNNVLEEVRSEIEILNETTASGKEIEEHLEQA
FT                 DLPNQVLESKKKEMNESVRRSEEILKVLSGYEEGKKENPLELIAVFKSFVQ
FT                 QTTEQQKQMREKQIAEEERKIREAKDSMERKKRLEKVLITLNDRLKREPES
FT                 VEEKNPVRDLEQEQTKDLFENRKKGEKTISFNYDSDDYRNYRRKDSSEDSR
FT                 EKTGRKYKKESRASNMPHKSSKRGKKKRHRRPSFSATSSTTSGTESSEFSS
FT                 SESSTDSSKEWKGRRERREGRRNRDLKRIPVAEWRLKYDGKDQGRKLTEFL
FT                 KEIKMRCISEEISERELFRSAIHLFSGRAKDWFIEGIENRDFRNWHELKKE
FT                 LKREFLPPDLDFQLEVQATERRQARGEKFTDYLHDIMKIFHSMTRPISERR
FT                 KFDIIWRNLRFEYKNAMTGAGVRSLSKLKKYGRIIDENNWTMFHKSHDYMA
FT                 RGRNTQVSEVSATDSSKSKAPFQNPNSASRVFTRSKSKNEPTEKIKPLSET
FT                 KTSGERKEEKSADPVEGSSKGTLIAMAENYRRPPIGVCYNCRLSGHHYADC
FT                 PKPKGKFCRICGFGDVITPTCPVCQKNEAFSA"
FT   CDS           2750..5887
FT                 /product="Gypsy-128_AA-I_1p"
FT                 /translation="MSGFEPVSENDYSPVSNVDELFVRVDGDTRPFVKVSV
FT                 LGREIIGLLDSGAHRSVLGAGCRKLIKLLKLKMFPSDTHVQTASGSTVDVE
FT                 GFVYLPVTFNNENRIIKTLVAPKLKRRLILGFDDFWRAFQIQPVVLSRESR
FT                 KKEKEFEESLRVEELEWKEGGVKEETLSETQKGQLEKVKLKFKIAIEGQVL
FT                 DVTPLATHRIDLKDEFKNSPPIRINPYPTSPEMQKRINKELDNMLQQQVIE
FT                 HSKSEWSQSTVPVIKPTGEVRLCLDARRLNDRTKRDAYPLPHQDRILSRLG
FT                 ASKYLTTIDLTKAFLQIPLHPDSRKYTAFSVLGRGLFQFTRLPFGLVNSPA
FT                 TLARLMDDVLGHGELEPNVFVYLDDIVVVSDTFEAHVQTLSEVARRLKAAN
FT                 LSINLDKSRFCLKELPYLGYILSPEGLKPNPDRIEAIVNYERPASLKSLRR
FT                 FLGMTNYYRRFIPGFSEHSAPLTDLLKKKPKTLLWNSKAEQAFLNLKESLI
FT                 ASPVLANPNFDLPFQVQSDASDSAIAAILTQQHEEGEKIIAYFSQKLSPAQ
FT                 KAYAASEKEGLAVLCAIEKFRPYIEGTHFTVVTDASALTHIMKGKWRTSSR
FT                 LSRWSIELQGYDMEIRHRRGKDNVIPDALSRSVELAEILSDQNVWYSDLFK
FT                 KVECSPEDYLDYKIENQQLLKLVPNKTEVLDYRHEWKLCIPESDRERILHH
FT                 EHDESLHIGYDKLLDKLKARYFWPKMAEHAKKYVGRCQVCKECKPSTISQH
FT                 PTMGSPRLATKPFQILAVDFIQSLPRSKAGNMHLFVLLDVFSKWTVLVPVR
FT                 KISAELIVKILEEQWFRRYSVPEIIITDNATSFLSNDFKTFLAKYEVKHWA
FT                 NSRHHSQANPVERLNRSINACIRTYVKSDQRQWDTKISAIEHTINNTLHSS
FT                 TNFSPYRVLFGHEIITTGQEHRRDPDTIDISEKERNEQRLKVDDVVHALVR
FT                 KNLEKAHDRSTRAYNLRFRQPAPVYQIGQQVYKRNFAQSSAGDNYNAKLGP
FT                 AYVPCTIVSRRGTSSYELADESGKNLGVFSAADIKPGISN"
XX
SQ   Sequence 6675 BP; 2159 A; 1295 C; 1524 G; 1697 T; 0 other;
     attgacgccc aactaaataa gctctggtca aggattcaag cagccactct tccggagtga        60
     acagaacgat aggttatcaa attaatgaaa ttcacgttaa atacgtggtt gtgaagaaaa       120
     ttaggttatc aaattctaac aaaaggtttc tgaaaaatca aattagcaaa ggcagtgaaa       180
     tcaaaccggt agcaccaatt tgttctcgcc gataacgtga aaagtttcta gaaagcatac       240
     tactagtgcg cgtaccctca caaaagccca cagtgttgct gtgtattcac gaaatagcga       300
     ttaattagaa aacgattgat atttcaatta aattcttttg ttaatgggtc ttgattcgac       360
     taaataacct ccattgtgat tttttcattg aaagtgttac ttgcgatttg tattgtgcat       420
     gaataaagcg attatctaca caatagtctg cattgatttc ttgaatagct ccattcaacg       480
     aaacaatgga cctacaaaca atgtacgcgt ccatggatgt ctcccatctt tcagtcgatg       540
     aggtagaata cgagttacta atcaggaaca ttttgtttca cttcgatgaa cacgagagta       600
     tcaagcgaag aaaactcaaa gataaattga aaagtgagaa agaattgaaa acgtttgctt       660
     tttcccagcc gtggcgaagc ttggatgagg aattagtcac gataagtctg aagctaaagg       720
     tcataggtgg tttgctcgag aaccctaaaa cggatgctag acaacgtcag aagttgaaaa       780
     cgcgtttagt tcattaccga gttcgtaatt atatcttgtc taaagcttca ggcgcggata       840
     aatgcagaaa tgaaatcgta aaagtgggac gacaagctac agaactattt cgtagatttt       900
     ttcccgaagt gaatgaggct gacgttcatt cagaagattc cgaacggctt gaatcggatt       960
     tgaataacgt gctagaagaa gttaggagtg aaatcgaaat cttgaatgaa acaaccgcgt      1020
     ctggtaagga gatagaggag catttagagc aggcagattt gcctaaccaa gtgcttgaat      1080
     caaagaagaa agagatgaat gaatcggtta ggaggtcaga agaaattttg aaagtacttt      1140
     cggggtatga ggaaggcaaa aaggaaaatc cgttagagct tatcgcggtt tttaaatcgt      1200
     tcgttcagca aacgaccgag cagcaaaagc agatgagaga gaagcagatt gctgaagaag      1260
     agcgaaagat aagagaagcg aaagatagca tggaacggaa aaaaagattg gaaaaagttt      1320
     taatcacttt aaatgatcgt ttgaaaagag agccagaaag tgttgaagag aaaaatccgg      1380
     tgagagattt agagcaggaa caaacgaagg atctgtttga gaataggaag aaaggggaga      1440
     aaacgatcag ttttaattac gattcggatg attataggaa ttatcgtagg aaggacagtt      1500
     ccgaggacag tagagagaag actggtcgta aatacaaaaa agagagtaga gcatccaaca      1560
     tgcctcataa gtcgtccaaa cgcgggaaga aaaaacgaca tcgtagaccg agcttttcgg      1620
     ctacatctag tactacatcc gggacagaaa gttccgagtt ttccagttcg gaaagtagta      1680
     cggattctag caaagagtgg aagggtagga gagaaaggag agaaggtagg agaaacaggg      1740
     atctgaagag aataccggtt gctgagtgga gattgaaata cgatgggaaa gatcagggcc      1800
     gaaaattaac tgaatttttg aaagagatca aaatgagatg catttctgag gaaatttctg      1860
     agagagagtt gtttaggagt gccattcacc ttttctcagg gcgcgccaaa gactggttca      1920
     ttgaagggat cgagaacaga gactttcgga attggcatga gctaaaaaag gaactaaaac      1980
     gggaattttt accacccgat ttggatttcc agcttgaggt tcaagctaca gagcggcgac      2040
     aggctagggg tgaaaaattt actgactatc tgcatgatat aatgaaaatt ttccactcga      2100
     tgacccgccc gatctctgag cgcaggaagt tcgatattat ctggcgcaat cttcggttcg      2160
     aatacaagaa cgccatgacc ggtgcaggag ttagatcgtt gtccaaactg aaaaagtacg      2220
     gacggattat tgacgagaat aactggacaa tgttccacaa gtctcatgac tatatggccc      2280
     gtggtagaaa tactcaggtc agtgaagttt ctgcaacgga ttcgtcgaag tccaaagcgc      2340
     ctttccaaaa tccaaactct gcatcacgtg tttttaccag aagcaaatct aaaaatgaac      2400
     ctacagagaa aatcaaaccg ttatcggaga cgaaaacctc tggggagaga aaggaagaaa      2460
     agtctgctga tccagtagag ggttcttcta agggcacttt gatagcgatg gctgaaaatt      2520
     atcgtcgacc tccaattgga gtgtgctata actgcagatt gagtggacat cattatgctg      2580
     attgtcccaa accgaagggc aaattttgtc gaatttgtgg ctttggagat gtaattactc      2640
     ccacttgccc agtgtgtcaa aaaaacgagg cgttttcagc ttgagggggc aagctgaagt      2700
     agatcgccga aaccccccaa caaatgatcg tgtcactgaa gaactagaaa tgagtggatt      2760
     tgaacctgtc tctgagaacg actactctcc cgtgtccaac gtggatgagc ttttcgttcg      2820
     tgttgatgga gatacccgac cgtttgtaaa agtgagtgtg cttggaaggg aaataatcgg      2880
     tcttttagac agtggagctc accgctcagt cttgggagca gggtgtagaa agctcataaa      2940
     acttttgaaa ttgaaaatgt ttccttccga tactcacgta cagactgcat cagggtccac      3000
     tgttgatgtg gaaggtttcg tgtatttgcc ggtcactttc aacaatgaaa accgcattat      3060
     taagactctc gtggcgccca aactaaaacg aagattgata ttaggttttg atgatttttg      3120
     gagagctttt caaattcaac ccgttgtgtt aagtcgagag tctcgaaaaa aggaaaagga      3180
     gtttgaggaa agcttaaggg tggaagaatt ggaatggaag gaaggagggg taaaggagga      3240
     aactctaagc gaaacacaaa aaggccagtt agagaaggtc aaactgaaat tcaaaattgc      3300
     aatagagggg caagtcttag atgttactcc ccttgcaact cacagaattg accttaaaga      3360
     tgagtttaaa aattcacccc caatcagaat aaacccatac ccaacatcac ctgagatgca      3420
     aaaacgcatc aataaggaac tcgataacat gctgcaacag caagtcatag agcacagtaa      3480
     aagtgagtgg tcacagagta ccgtcccagt aattaaaccc actggggaag tacggttgtg      3540
     tttagatgcg agacgcctaa atgatagaac aaaacgcgac gcttatccac tcccacacca      3600
     agacagaata ttgagcagat tgggtgcaag caagtattta actactatcg atttgacgaa      3660
     agctttctta caaataccgc tacacccaga ctctcgcaaa tatactgctt tttcagtgtt      3720
     ggggagagga ttgtttcagt tcaccaggct cccattcgga ctagtcaata gtccagctac      3780
     attagcgaga ctaatggatg acgtcctggg gcatggtgag ctggaaccaa atgtgttcgt      3840
     ctaccttgac gacattgtcg tggtaagcga tacatttgaa gcacacgtac aaaccctctc      3900
     tgaagtagct cgtcggttga aggcagcaaa cctgtcaatc aaccttgaca aatctcgatt      3960
     ttgtttgaaa gaactaccct atttgggata tatactctca cccgaagggc tgaagccaaa      4020
     tcccgatcgt atcgaggcca tagtcaatta cgagagacca gcatctctca aatcgttgcg      4080
     caggtttctc ggtatgacaa attattatag acgattcatt ccagggttca gtgagcactc      4140
     tgcacctctc actgatctcc tgaaaaaaaa acctaaaact ctactgtgga actcgaaagc      4200
     ggagcaagct ttcctaaacc tcaaagaaag tttgatcgct tcccccgtac tcgctaatcc      4260
     caactttgac cttccatttc aagtccaatc agatgccagc gatagtgcca tagccgcaat      4320
     cctgactcaa caacatgaag agggtgagaa aataattgct tatttttctc aaaagctctc      4380
     ccctgctcag aaagcttacg cagcttcaga aaaagaaggg ttagcagtcc tctgtgccat      4440
     tgagaaattc cgtccataca ttgaagggac acatttcact gtggtcacag atgcgtcagc      4500
     tctcactcat ataatgaagg gtaagtggcg cacatcatcc cgattgagta gatggagtat      4560
     agaattgcag gggtatgaca tggagatcag acacaggcgt gggaaggata acgtcattcc      4620
     cgacgcactg tcccgatctg tggaattggc cgagattctg tctgaccaaa atgtgtggta      4680
     ctctgactta ttcaagaagg ttgaatgttc acctgaagat tatttggact acaaaattga      4740
     gaatcaacaa ctcctcaaac tagttccaaa caaaactgaa gtactcgatt accgccatga      4800
     atggaagctc tgtatcccgg agagtgatag agagcggatt ctccatcatg aacatgacga      4860
     gtcattacac atcggatacg ataaactgct cgataaactg aaagcccgat acttctggcc      4920
     gaaaatggca gagcatgcga aaaagtacgt tggcagatgt caggtgtgca aggaatgcaa      4980
     acctagcacc atatcacagc acccaactat gggcagtcca cgtctagcca caaagccatt      5040
     tcaaattttg gcggttgact tcattcagtc tttaccgcga tcaaaagccg gaaacatgca      5100
     cttattcgtc cttctcgatg tgttctcgaa atggacagtt ctagtcccgg ttaggaaaat      5160
     ttctgcggaa ctgatcgtga agatcctcga ggaacagtgg ttcaggcgct actccgttcc      5220
     cgagatcata atcaccgata atgccacaag tttcttgagc aacgacttca agacattcct      5280
     ggcgaaatat gaagtgaaac attgggcaaa ttcgcgtcat cactcccagg cgaaccctgt      5340
     ggagcgattg aatcggagca taaatgcgtg tattcgcact tatgtgaaat ccgatcagcg      5400
     ccaatgggac accaagattt ccgctatcga gcatacgata aacaatacgt tgcattcgtc      5460
     cacaaacttt tctccttatc gcgtcttatt cggccatgag atcatcacca ctggtcaaga      5520
     gcatcggaga gatccagaca cgatcgatat ttctgaaaaa gaacgaaatg aacaacgatt      5580
     aaaagttgat gatgttgtgc atgccctggt tcgaaagaac ttagagaagg ctcacgatcg      5640
     aagtaccaga gcgtacaacc ttcgttttcg ccaacccgct cctgtgtacc aaattggtca      5700
     acaggtttat aaaagaaatt ttgcccaatc gtctgctgga gacaattata atgccaaact      5760
     tggtccagcg tatgtaccat gcaccattgt ttcgcgaaga ggcacgagct catatgagct      5820
     tgccgatgaa tccggcaaga atttgggtgt attctcagcc gcagatatta agcccggtat      5880
     ctcaaattga tcagcacaga tttctccatc gttcagtcct gtttttagaa ttttaggaag      5940
     ttaataatca ctaatatcga gaatttagaa actcgaccgt aatcaacgtg tccgcgtcgg      6000
     tgaatcgtat tgtatagata gagcaaaaat cgttagagtg agcgatattg atgtagatga      6060
     atgtaggtac gtgttttctg tagtagatct gtctctgttc gacaaaagta gaacttcaat      6120
     ttttaaatag aacgttgttt agagggatcg tagcttgcga gtgaagaaca ccaccgacca      6180
     atgaaatatg actagtagtg accaaaattc ttcctcgtga taatgtagat atttttaaac      6240
     cggttatatc tgcactgcgg tcctaattaa tgacatccgt tgcaccaaat ccaatcatcc      6300
     caatccaaaa aaaaaacata taatagccca gaatgcagaa aactattatc tattcattcg      6360
     atcgatttgc atcaagtaat ttcgcaagac tagtttttta ttttggttca tctttcacga      6420
     aacttcacag tttggataaa aaggaagatg ataaggccaa ttagctgaat cgggaatttg      6480
     aagcgttaca aatagcattc cgtgcatgaa aggaatgaac tatttggtga ttacacgcga      6540
     caatgtctgt ttttgggaaa gtcgaatgca tgaatgttgc atctcaaacc tggtatgcta      6600
     tttagttagg taaactttat taaaattaat tgataataaa ttatacaatt aattttgggg      6660
     ggagatagaa ggtgg                                                       6675
//
ID   Gypsy-128_AA-LTR repbase;    DNA;    INV; 1018 BP.
XX
AC   supercont1.366;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-128_AA_;
KW   Gypsy-128_AA-I; Gypsy-128_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1018
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.366; Positions  584898  585915.
XX
SQ   Sequence 1018 BP; 321 A; 236 C; 216 G; 245 T; 0 other;
     tgttaccgtt gcgaagatct taatttgttt atttattttt cagaataatt gttagtattt        60
     gttgttagtt tgttgtttag ttatattaaa ttatttatta gaattataaa gaaatgttag       120
     taaaattgtt atatggttgg tattaggctg ttaataattg ttaattaaat gtattactcc       180
     ggaattagtt gttaggaaca aaatttgtaa atacactaaa cacacattga acacgtctaa       240
     caataatcat gcacgaaaaa ggggaaaacg cgtcagccat aaggtatgcc acgtcaaaaa       300
     gggaataaaa gaaagggtat ggaaaaggga acaggatgag caggctactg ggttggaaag       360
     cgctaagtaa aaggtctatt ccaatctaga tctcaacgag accacacgga aatattccaa       420
     acttaaagtg accgttaccc gaagaaagtt taaagtacat aagtgcataa gtgcaaccgt       480
     tcgaatcagg tacgagtagc ttcgatatga acggtatcta gaataccaaa aagccgtcct       540
     aacgccctac ccataaccca tactaggacc cgttatagtt tgcctgaaga ttttggcaga       600
     ggctcccacg acccgtctaa acccgtggtg aacccctgta gctgccctga aggcccgcct       660
     aaggtcccag gatcaccaag gatacctgaa gccgaccatt tgggaacccc gacgccctag       720
     gaagctggcg caacccgtta aggaaccaac ttcaacgcgg agaccgttag gccacaccaa       780
     gccatccaag ccccgtagag ttcgcgttca gcctagaacg tgccgatcaa cccccacgtg       840
     ctccacttcc ggccggccgc atcgagacac gacacacctc acacctacac cacacccagt       900
     aagtccaata aaaagaatta aagaagttga gtgcgtttta cttggaccct tgacgagctt       960
     acgccgaccc taagagtctc ggaatttgag cctggtccct ccgaccagcc gggtaaca        1018
//
ID   Gypsy-129_AA-I repbase;    DNA;    INV; 4443 BP.
XX
AC   AAGE02025245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-129_AA_;
KW   Gypsy-129_AA-LTR; Gypsy-129_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4443
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025245; Positions   70617   66175.
XX
CC   Positions [3364-3825] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..4392
FT                 /product="Gypsy-129_AA-I_1p"
FT                 /translation="MENPEFMQALSTMIAQALRASIGNAIEQVNVDRPVPA
FT                 GDAAAPSPKVPPFMMPEYRSTEGTSVEDYFKRFKWALQLSLIPEAQYANYA
FT                 RVHMGADLNNALKFLVAPQDPADIAFEDMLTTLVNHFDCKKNKFVESVKFR
FT                 QIIQQKGESVAQFALRLKQGAAYCDYGDFLDRMLIEQLLHGLEARDICDEI
FT                 IAKNPDTFDAAYKVAHTMEATRNTAREINTGSPSTHPEATHKLGYEKPKTK
FT                 KLQQPQHRSPPVHRKQQENRPSNKQQAKAHPNSAGGSSFCNGCGEQHLRSN
FT                 CRFRNAKCNICDKKGHIAKVCRSGKSQHSSADQVQSQETPATEVDLVQSLS
FT                 QVHTVPCIEKKMIDVEIDGRRLQMELDTGAPCGIIGESKLRRIKPKFSLLP
FT                 TDRQFSSYSGHRIHCLGRLPVHVSLGSTTRRLNLYVVSGESDSLFGRDWIA
FT                 HFADQINLNQIFSQGTLINSITNTELTQDQEAHLSKLLDNFEGTFSDVPGK
FT                 LKGPPAKVHLKPGASPVFAKARDVPFALRDRYAAEIDKKLASGFYEKVEFS
FT                 EWASPTHIVIKNNGGIRITGNYKPTVNPRMVIDEHPIPKIETLFNKMKGAT
FT                 LFCHLDVTDAYTHLPIDDEFRHVLTLNTTTHGLIRPTRAVYGAANIPAIWQ
FT                 RRMESVLQGLDQVVSFYDDVIVFAKDFDELLLALTSTMDRMKENGLRLNRS
FT                 KCIFATPSLECLGHRIDRHGLHKSDKHVEAIRDAPRPTTPEELQLFLGKAT
FT                 YYNAFIPNLSSRARSLRDMLLADPFEWTPEADEAYRDLKQALVSPQVLIQY
FT                 DPTLPLVLATDASKTGLGAVLSHRLSNKTERPIAYASCTMSTTEQRYPQID
FT                 KEALAIVWAVKKFFHYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMAN
FT                 YADYLAHFNFDVVYKPTSQNTNADYCSRIPSRSTQSDVNSLFLHEGRNTED
FT                 EFELFTLHQIQQLPVRAEQIARETRKDTHLGKIVQDLELGRNLPQSGYKAP
FT                 EAKYTLAASCLLFEHRVVIPPTLRQAILNDLHVGHIGVVKMKGLARSFVYW
FT                 PGIDADIEAAVRSCTECARHATAPPKFSSHHWEYPSSPWERIHVDYAGPVA
FT                 GAMLLIIVDAYSKWVDLKITHSTTAEATCQLLDGLFAAYGAPVTLVSDNGP
FT                 QFAAGEFKSFLQKSGVKFHKLSAPYHPATNGQAERYVQTVKKALKAMGTTA
FT                 SNLQANINEFLQQYRKAPHTETGESPAKLFLGRNIRTRLDLVRPQDARTKI
FT                 TEKQRATFDSSFRSFLPGQHVYCLSGNPRMPKWIPGVVAARFGDLHYDIVY
FT                 EGKHLKRHVDQIRRFHNNDNNNNECNEKCIQPSSEAKSNETSGMAPHRMHF
FT                 YGDIVTSQETQSDQQSTSSSESSSEGFETPDGRSTPSSSPDRSSEGSPPAP
FT                 PPGLRRSVRPHRPPLRYSP"
XX
SQ   Sequence 4443 BP; 1235 A; 1253 C; 1053 G; 902 T; 0 other;
     attttggtgt cagaagtggg attggtcgaa aacttctcgc gatacgaaag tgaggttaga        60
     gtcgccccga aaacactctt gccatcgaga acaatggaga atcccgaatt tatgcaagcg       120
     ctgtccacga tgattgcgca agccctcaga gcatcgatcg gtaacgccat cgaacaggtg       180
     aacgttgatc gaccagttcc ggccggagac gccgctgctc catcgccgaa ggtaccaccg       240
     ttcatgatgc ccgagtaccg ctccacagag ggaacgtccg tcgaggatta tttcaagcga       300
     ttcaaatggg ccctgcagct gagtctcatc ccggaagctc agtacgctaa ctatgctcgc       360
     gtccacatgg gagcagacct gaataacgcc ctgaagttcc tcgttgcccc ccaggatcct       420
     gccgacattg ctttcgagga tatgctaacc accctggtga accacttcga ttgcaagaag       480
     aataagttcg tcgagagcgt caagttcagg caaatcatcc agcaaaaggg cgaatccgtc       540
     gctcagtttg ctcttcgatt gaagcaaggc gctgcctact gtgattacgg agactttctg       600
     gaccggatgc tcatcgaaca gcttctacac ggtctggagg cacgagatat ctgcgacgaa       660
     atcatcgcga agaatccgga caccttcgac gctgcctaca aggtcgcgca caccatggaa       720
     gcaacccgga acacggcgag agaaatcaac acgggatctc cgtcaacgca tccggaagca       780
     acccacaaac tcggctacga gaagccgaaa acaaagaagc tacagcaacc tcaacatcga       840
     tcgcctcccg tccaccggaa gcagcaagaa aatcgaccga gtaacaaaca gcaagctaaa       900
     gctcacccga acagtgctgg tggatcgagc ttctgcaacg gctgtggcga acagcaccta       960
     cgaagtaatt gccggttccg taacgccaag tgcaacatct gcgacaagaa gggccacata      1020
     gccaaagttt gccgatcggg gaagtcgcaa cactcttccg ctgatcaggt gcaatcgcaa      1080
     gaaacgcccg caaccgaggt cgatctggta cagtccctaa gccaagttca cacagttccg      1140
     tgcattgaga agaagatgat tgacgtggaa atcgatggtc gtcgcctgca gatggagttg      1200
     gacaccggag caccgtgtgg aatcattgga gagtcgaagc tacgccggat caagccgaaa      1260
     ttttcactgc tgccaacgga cagacaattc tcgagttact ctggtcatcg catccactgc      1320
     ctaggtcgtc tccctgtgca tgtatctctc ggatctacaa cgcgcagact gaacctatac      1380
     gtcgtgtctg gagaatccga ttctctcttc gggcgcgatt ggattgctca ctttgcagac      1440
     cagatcaacc taaaccaaat attttcgcaa ggcacgctca tcaactcgat aacgaacacc      1500
     gagctgactc aggatcaaga agcacacctc tcaaaacttc tggacaactt cgaaggaacc      1560
     ttcagcgacg ttccaggaaa actcaaagga ccaccagcga aagttcatct caagcccggc      1620
     gcatcaccgg tatttgcgaa ggcgcgcgac gtaccttttg ctctgcgtga ccggtatgca      1680
     gccgaaatcg ataagaagct ggcctcagga ttctacgaga aagtggaatt ctccgaatgg      1740
     gcatcgccaa cccacatcgt cataaaaaac aacggaggta ttcggatcac cggtaactat      1800
     aaacccaccg tcaacccaag aatggtcatt gacgagcatc cgataccgaa gatcgaaacg      1860
     ctctttaaca aaatgaaagg agcaactttg ttttgtcacc tagacgtcac cgatgcctat      1920
     acgcacctcc caatcgacga tgaattccgc catgtgctca cgctgaacac cacgacacac      1980
     ggactcattc gtcctacgag agccgtatat ggagctgcta acatcccggc tatttggcag      2040
     cgacgtatgg aatccgttct tcaagggttg gatcaagttg tcagcttcta cgacgacgtc      2100
     atcgttttcg caaaggattt cgacgagctt ctgcttgcac tcacatcaac gatggacagg      2160
     atgaaggaaa acggtctacg gctcaacaga tcgaaatgca tcttcgctac accatcacta      2220
     gaatgcctgg gtcatcggat cgatcgtcac ggtctacaca agtcggacaa acacgtcgaa      2280
     gcaatccgtg acgcaccacg tccgactacc ccggaagaat tgcagctgtt cctaggtaag      2340
     gcaacgtact ataatgcgtt cattcccaat ctctcttcaa gggcaagaag cttgcgagac      2400
     atgctgcttg ccgacccgtt tgaatggaca cccgaagccg acgaagccta ccgagacttg      2460
     aaacaggctc tggtctctcc gcaagtacta atccagtacg acccgacact accactggtg      2520
     ctggcaacgg acgcaagcaa aactggtctc ggcgctgttt tatctcaccg tctgagcaac      2580
     aaaacggagc gaccgatagc ctacgctagc tgcaccatgt ccaccaccga gcaacggtac      2640
     ccgcaaatcg acaaggaggc tctcgccatt gtgtgggcag tgaagaagtt cttccactac      2700
     ctgtacgcac gcaagttcac gctggttacg gaccacaagc cgctcacgca aatcctgcat      2760
     cccgagaagt ccctccctac gctctgcatt agtcgaatgg caaactacgc tgattacctg      2820
     gcccacttca acttcgacgt ggtctacaag ccaaccagtc agaacacgaa tgccgactac      2880
     tgttcgagaa ttccaagccg atcgacacaa tctgatgtca acagcctgtt tcttcacgag      2940
     ggaagaaata ccgaagacga atttgaacta ttcactctgc accaaatcca acaattgccg      3000
     gtgcgagctg aacaaattgc tcgtgagaca cggaaagaca ctcacctcgg gaaaatcgtt      3060
     caagatctgg agctaggacg aaaccttccg cagtcgggct acaaggcacc ggaagcaaaa      3120
     tacactctgg cagccagttg cctactcttc gagcaccgtg tcgtcatccc accaactctt      3180
     cggcaagcga tcctgaacga ccttcatgta ggacacatcg gagtcgtcaa gatgaaaggg      3240
     ctggcacgat cttttgtgta ctggcctgga atagatgcag acatcgaagc cgcagtgaga      3300
     tcctgtacgg aatgcgcacg acatgcaact gcaccaccga agttcagcag ccatcactgg      3360
     gagtacccga gcagtccttg ggagcgtata cacgtcgatt acgctggccc tgtggcaggt      3420
     gcgatgctgc taataattgt cgatgcttac agcaagtggg tcgacttaaa aatcacccac      3480
     tcaaccacgg cggaggcaac ttgccagctg cttgatggat tattcgctgc ctatggagca      3540
     ccagtaacac ttgtgtcgga caacggtcca cagtttgctg ctggtgaatt caagtcgttt      3600
     ctccagaaaa gcggggtaaa attccacaaa ctttccgccc cctaccatcc ggctacgaac      3660
     ggtcaggccg aacgctatgt ccagaccgtg aagaaggcgc taaaggcgat gggaacgacg      3720
     gccagcaatc tgcaagcaaa cataaatgaa ttccttcaac agtaccgcaa agctccccat      3780
     accgaaaccg gagaatcacc agcaaagttg ttcctgggtc gtaacatccg aactcgactc      3840
     gatctggtca gaccgcaaga tgcccgcacg aagataacgg agaaacaacg ggcaaccttc      3900
     gattcgtcct tccgctcctt cttaccggga caacacgtct actgcctgtc aggaaatccg      3960
     cgaatgccca aatggattcc aggagttgtt gctgctcgtt tcggagattt gcactacgac      4020
     atcgtttacg aaggaaaaca tttgaaacgt catgttgacc aaattcgacg ttttcacaac      4080
     aacgacaaca acaacaacga gtgcaacgaa aagtgcatcc agccgtcaag cgaagcaaag      4140
     tcgaatgaaa catcaggtat ggcacctcat cgtatgcact tttatggaga catcgtgacg      4200
     tcacaagaaa cgcaatccga ccaacaatca acttcgtcat cggaatcgtc ttctgaaggg      4260
     ttcgagacac cagatggacg atcaacgccg agtagcagcc cggaccggtc aagtgaaggt      4320
     tcaccaccgg ctcccccacc agggttgcgt cgttctgtga gaccacatcg cccccctctt      4380
     cgatactcac cataattata gtagttataa gagtttcttt cttaaaggag ggaggaaata      4440
     tta                                                                    4443
//
ID   Gypsy-129_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   AAGE02025245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-129_AA_;
KW   Gypsy-129_AA-I; Gypsy-129_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025245; Positions   66174   65933.
XX
SQ   Sequence 242 BP; 73 A; 48 C; 37 G; 84 T; 0 other;
     tgtatgcacc ttggtttgtc ttgaatttga aaatgtttat ttttcccagt gcataatgca        60
     acttcttgtt taaaccttgt actcagttga aaaatgagac gaataaaacc gcgcatcgcg       120
     aactagccat cctctattaa attcgcgttt tgtatcaatt tagttaaaca ataaagttat       180
     attttgcggt aatcatttcg tcttaagtcc tttaattcgg gaaaccaccc acatacacga       240
     ca                                                                      242
//
ID   Gypsy-12B_PPo-LTR repbase;    DNA;    INV; 116 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_PPo-LTR; Gypsy-12B_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-116
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2981-2981 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 116 BP; 37 A; 17 C; 21 G; 41 T; 0 other;
     tgagatgtag gtatctagaa aacttatatg taaaagtacc tctcactaga ggatattttg        60
     tgtcagtcaa ttatacgcct tggacttgat atcagtgttt tattgcaaac attaca           116
//
ID   Gypsy-12_AA-I repbase;    DNA;    INV; 4392 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   26-APR-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_AA_;
KW   Gypsy-12_AA-LTR; Gypsy-12_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4392
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 993-993 (2011).
XX
RN   [3]
RP   1-4392
RA   Bao W.;
RT   "Sequence updated to consensus.";
RL   Direct Submission to Repbase Update (26-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(111..401,405..4313)
FT                 /product="Gypsy-12_AA-I_1p"
FT                 /translation="MEGEGVSGVAQTAVKREAVGAAPIVRAGMFGQIEQYV
FT                 VGENFGEYVNRLEMFFLVNDTPDDKKSSGAGHGGWSQLILNRSQIEFTGRS
FT                 TYEVVRGSGSPQKAPRPTTNIVAERYKFRRCEQMSSQSVTEFIISLKATAQ
FT                 SCKFGDFLSDALRDQFVAGIKDQSLRKKLLTEPELTFEKACSIGRSWEAAL
FT                 SQNKEMSSQSNHVVAAMREKRNPVHKTKQNVTRAAESKSNRASTKQFKPCY
FT                 RCSRLHDPATCPARTWTCYSCGKEGHVSTCCRMKSSSSKKSSGNHQRVAEM
FT                 AEAVEVLRLNLMTEPEKPARRPSSIPKAKDGCSLSILEQTSTSNINSLDKA
FT                 DSPEFVTLDCQGRRLDFEVDCGACRSVISTDMYRTHFPDCKLVPTALEFVS
FT                 VSGQRIMPKGTVGIRVSAPSGIQGQLELVVIPTDRAVHPLLGRDGLDLIFP
FT                 GWRKAFSIKSVGKSEQSFDTELRTRFPNVFSESPENAITGFTAEIVLKPGX
FT                 TPVFHKAYAVPFALREKVDKSLDTLVQDGILVPVRSSPWASPIVVVPKKDG
FT                 TVRICLDGKAALNSRTTVDHYPLPRIDDILAKLANWKVFCKIDLSGAYLQV
FT                 TLSKASQVLCTVNTQRGLYQYTRMPFGLSSAPAIFQSIIDQILVNSPGIPY
FT                 LDDIIVGGRNREECHANLLIVLKKLNDHNVRINLSKSCFYVEKVNHLGYTI
FT                 TADGIRPDESKVKAILDAPSPKNVTQLQAYLGLLNYYHRFLPNLSIELRPL
FT                 YNLLKKNSRFVWSSNCQTAFENTKSLLVENDLLEPYDPLKPIILAVDASPY
FT                 GVGAVLSHLVNSEEKPVCFASSTLTPAQVNYAQVHKEALAVIFGINKFHKY
FT                 LYGAKFKLVTDNSAIKEIFNPVKSTSAIAAARLQRWAVILSNYDYSIEHRP
FT                 GKFMNHADALSRLPLNEPTDVEHISLGLKNVSTCPNIVNLELVREHQKXDP
FT                 TLVKVRDYVSQGWPKALDPALKPYFQINSRLGIDEDVLYFNDRVVIPNSLK
FT                 SAVIEQLHANHDGIVRMKMLGRTYVWWKSFDKDLNDFVQTCDVCQQRQPVP
FT                 REKVDTAWPKCQRPFQRLHLDLFYFEGQTALIIIDAYSKFIDVRLLKGSTS
FT                 VQLIEQLESFFAVFGITEEVVSDNGPPFNAELFIAFLEANSVKVSKTPPYH
FT                 PQSNGLAERGVRTVKDVLKKYLLDERCKQLSIARKINRFLINYRNTPTTTT
FT                 NRSPSSMIFSYTPRTLMNSVNPRKVEISPPTPPPSVAEKPKLIATEVTVNK
FT                 TYKPGDKVLYRNHFKDIVRWVPAIVLQKLSPLTYLISIEGNVRMVHVNQIR
FT                 LSNLSDKFHPSLPVALPSSSQIIDGDDRLNRQKGTDPQPEVQKPAGTCQQS
FT                 KQGKKKKHTKRRRSESKSPKVRRSDRLKGQPRLKYPK"
XX
SQ   Sequence 4392 BP; 1278 A; 948 C; 1006 G; 1157 T; 3 other;
     acttggcgac gagtgtaaaa cagtgcaagt ttcggtgaga acaatagtat cgcgtgcggt        60
     acaaggtcgg ttgcaatcac gtggtgagtg aataacctaa cctcaatata atggagggcg       120
     aaggagtaag tggtgtggcg caaactgcag tgaaaagaga agcagtaggt gcagctccga       180
     tagttcgtgc tggcatgttc ggccagatcg aacagtatgt cgtcggagag aatttcgggg       240
     aatatgtgaa ccgcttggaa atgtttttcc tcgtcaatga cacaccggac gacaaaaaaa       300
     gttccggtgc tggtcacggt ggctggtccc agcttatact caatcgcagc cagattgagt       360
     tcaccggaag atccacgtac gaagtcgtac gcggatctgg ttgatctcct caaaaagcac       420
     ctcgacccac cacgaatatc gtcgcggaaa ggtacaaatt ccgtcgatgt gagcaaatgt       480
     cgtcacagag tgttaccgag tttattataa gtctcaaagc tactgcgcag tcctgcaagt       540
     ttggtgattt tttatccgac gcgcttagag atcagtttgt cgcgggaatt aaggatcaaa       600
     gtttaaggaa gaagcttcta acggaaccag agctgacctt cgaaaaagcg tgttcaattg       660
     gccgtagctg ggaggcagcg ctcagccaga ataaggaaat gtcgtcgcaa tcaaaccacg       720
     tggttgctgc aatgagggag aagcgaaatc cagtccacaa aacgaagcaa aatgtgacca       780
     gagcagcaga atccaagtcg aatcgcgcgt ctacgaagca attcaaaccg tgctaccgct       840
     gcagccgtct acacgatcca gctacctgcc cggctcgtac ttggacgtgc tactcgtgtg       900
     gcaaagaagg ccacgtgtca acgtgctgca gaatgaagtc cagttcttcg aaaaagtcta       960
     gtggaaacca tcaacgtgtc gcagaaatgg cggaagcagt ggaagttctt cggttgaatc      1020
     tgatgacgga gccagagaag cccgcccgcc ggccgagcag tataccaaaa gcgaaggatg      1080
     gttgcagttt gtcgatcttg gagcagacat ctacaagcaa catcaactcg ctggacaagg      1140
     ccgattctcc agagttcgtg acattggatt gtcaaggtcg tcgtctggat tttgaggtcg      1200
     actgtggagc ctgtcggagt gttatatcca cagatatgta tcgaacgcat tttcctgact      1260
     gtaagttagt tcccactgcc ttagaatttg tttcagtttc aggtcagcgc attatgccaa      1320
     aggggaccgt tggcatccga gtctcggcac catcaggaat tcaaggtcaa ctggagttgg      1380
     tggtgatacc cactgaccgt gcagtgcatc cgttattagg tcgtgacggt cttgacctga      1440
     ttttccccgg atggaggaag gctttctcca tcaagtcggt tggtaagtca gaacaatcct      1500
     tcgatactga gcttagaaca agatttccaa acgtattttc cgagtcaccg gaaaatgcga      1560
     taacaggttt taccgctgaa atagtgttga aacccggtat kacacctgtg tttcataagg      1620
     catacgccgt tcctttcgca cttcgagaaa aagttgacaa aagtctcgat acactagttc      1680
     aggatggcat cctagttcca gttcgttcgt caccttgggc aagtcccata gtggtagtgc      1740
     ctaaaaaaga tggcacagtc agaatctgtc ttgacggcaa agccgcactc aatagtcgta      1800
     ctaccgtgga tcattatccg ttacctcgga tagacgacat tctagctaaa ttagcgaact      1860
     ggaaagtttt ttgcaagatt gatctttcgg gagcatactt acaagtcacg ctctcgaaag      1920
     cttcgcaagt attgtgtact gtgaatactc aacgaggact ttatcagtat acacggatgc      1980
     cttttggcct ttcgtccgcc ccggcgattt ttcaatcgat aattgaccag atattggtga      2040
     attcaccagg aattccttat ctggatgata ttatagttgg tggtcgcaat cgtgaagagt      2100
     gtcatgcgaa tcttttaatt gttctaaaaa agcttaacga tcataacgtt agaattaacc      2160
     tgagcaaatc atgtttttat gtagaaaagg tcaatcacct tgggtatacc atcacggcag      2220
     atggtatacg gcctgatgag tcgaaggtta aagccatatt ggacgctccg tcacccaaaa      2280
     atgttactca gctacaagcg tatctgggac tattaaacta ctatcacaga ttcctcccta      2340
     atctgtcgat agaactacgt cctttgtaca atttgctaaa gaaaaatagc agatttgttt      2400
     ggtcttcaaa ctgccagacg gcgtttgaaa acacgaagtc gttgttagtg gaaaacgatc      2460
     tactagagcc ttatgatcct ttaaaaccga tcattttggc agttgacgcc agcccttatg      2520
     gcgtaggagc tgtcctgtcg catttggtga atagcgagga aaaacctgtg tgtttcgcat      2580
     cctccacctt gactccggct caagtaaatt atgctcaagt gcataaggaa gctttggctg      2640
     ttatttttgg aataaacaag ttccataaat acttgtatgg tgccaagttt aagcttgtta      2700
     cagataacag tgctattaaa gaaattttca atccagtcaa aagcacttcg gcaatcgcag      2760
     cagcaagatt gcagagatgg gctgtgattt tgtctaatta tgattactcg atagaacatc      2820
     gaccagggaa gtttatgaat catgctgatg ctctttcgcg tcttccattg aacgagccca      2880
     cagatgtgga gcatataagc cttggcctca aaaatgtatc aacttgtccg aacattgtca      2940
     atcttgaact agtacgagaa catcagaagw ccgatcctac tttggttaag gttcgcgact      3000
     acgtctcaca gggttggccc aaggcgttgg accctgcttt aaaaccttat ttccaaatca      3060
     attcgcgtct cggaattgat gaagacgtct tgtacttcaa cgatcgggtt gtcattccca      3120
     acagtctgaa gtcagctgta attgaacaat tacatgctaa ccatgacggt attgtaagaa      3180
     tgaaaatgct tgggagaaca tacgtatggt ggaaaagttt tgacaaggat ctgaacgatt      3240
     tcgttcaaac ttgtgatgtc tgtcaacagc gtcaaccggt gccgcgagaa aaggtagata      3300
     cggcatggcc aaaatgccaa agaccttttc aaaggctcca cttggatctt ttttattttg      3360
     aagggcagac tgccttaatc attattgacg cttactcgaa atttatcgat gtccgtttgt      3420
     tgaaaggctc tacaagtgtt caattgattg aacaactcga gtcgtttttc gctgtctttg      3480
     gaattaccga agaagtcgtt tctgataacg gtccgccctt taatgcmgaa cttttcattg      3540
     catttttgga agctaatagc gtcaaggtct ccaaaacgcc accctaccac ccacaatcaa      3600
     atggattggc ggagagaggt gtgcgtacgg tcaaagatgt tttaaagaaa tatcttttag      3660
     atgaaagatg taagcagttg tcgatagccc gaaaaattaa tcgattttta attaattatc      3720
     ggaatactcc gacaacaaca acaaatcgtt ctccatcctc catgattttc tcttacacac      3780
     ctcgaacttt aatgaattcg gtaaatcccc ggaaagtaga aatcagtcct ccaacgccac      3840
     ccccttcagt tgctgagaaa cctaagttaa ttgcaactga agttacggtt aataaaacgt      3900
     ataagccggg agataaagtt ctgtatcgca atcacttcaa ggacatcgta cgatgggtac      3960
     ctgcgatagt tcttcaaaag ctcagtcctt taacatactt aatcagtatc gaaggaaatg      4020
     ttcgtatggt acatgttaac caaatccgac tttcaaatct gtccgataag ttccaccctt      4080
     cgttgcctgt cgctctaccg agttcatcgc agatcattga tggtgacgat cgtttgaatc      4140
     gtcaaaaagg aactgatcct caacccgagg ttcagaaacc agcaggaact tgccaacaaa      4200
     gcaagcaggg caagaaaaag aagcatacaa aacgccgaag aagtgaatct aagtccccaa      4260
     aagttagacg atcagatcga ctaaagggac aaccaagact taaataccct aaataatttg      4320
     aacattgtta aaacgaaaaa atatgaaaac tggattgtac aatactgtta aatttgttaa      4380
     gccgggagag at                                                          4392
//
ID   Gypsy-12_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   26-APR-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_AA_;
KW   Gypsy-12_AA-LTR; Gypsy-12_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 994-994 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 221 BP; 71 A; 46 C; 36 G; 68 T; 0 other;
     tgtagtatct agataactat tatagcaata gataaaaatt atagcacgta gctttcttta        60
     atgatcgaac tactacgatc agtctctttg gttccgaccg ttcacccgaa cggacgcaag       120
     tgtaacaagt ctccctaatt aaaagtgaaa caataaagtt agtgctcaag tgaaactcca       180
     agtggttata gtcttatttc gtcctccgtc ccaatacttt a                           221
//
ID   Gypsy-12_AnFu-I repbase;    DNA;    INV; 4909 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4909
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2897-2897 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1479
FT                 /product="Gypsy-12_AnFu-I_1p"
FT                 /translation="MPKESEKEKEHFDQRINWRSTNVASDTDSDSNSVTME
FT                 DQIVEQLKQLTLGLSQINERLNIQEQCIKLTQEQICVQANQVTNVEPTTTS
FT                 KVEDFYRIPDPIKSLPNYDGNRKQLTAWLDTAESTLNLFKGRVNSDVYGVY
FT                 VTAVCNKIEGKAKDIICVAGNPKDFDAIKVILIDAIGDRRELSTFKCQLWQ
FT                 HTMTEGMTLHKYYQQAKEIIQNIKTIAKQEKDYRDNWTVICKFIDEDGLAA
FT                 FVAGLRKPYFGYAQAARPKDIEDAYNFLCKFRSHELNSNRMNTHQPSFTAS
FT                 SSHKQVPQNKQNFSSSSRVYTGYQKKPDNHYPQPMDVDNSSRTKNTTILPR
FT                 TINNTEIMHKNEDNSNFHREIPSENLT"
FT   CDS           1428..4862
FT                 /product="Gypsy-12_AnFu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="KRRQFKFSSGNPFRKSYLKETLDFLPYITVYDSSTDK
FT                 IIRLLIDTGANENILKPGIIFNCEQNCTAKISNIFGTHTTNTKVTCKLLGQ
FT                 QIKPQTYYIHDFHNYFDGLIGSKFMAETNTVINYFTNTITIQGIETEFKKY
FT                 YSNKYFYHTITVTTDRSGDWFVPSFQQLSEDTLIEPGIYSSLNNRSTINVL
FT                 TTSKITPQISKLNITVNNFETISPIPFDSNAIPNRDMIEKIIRTDHLSDFE
FT                 KEKIINIILRHHQVLLKNNEKLTSTTAVKHQINTKDDSPVFTKTYRYPHVY
FT                 KQDVEAQIKEMLETGIIKPSKSPYASPIWVVPKRKDASGIQKIRVVIDFRK
FT                 LNEKTISDKYPLPEIEDILDSLGKSQYFTILDLKSGFHQIEMHPDHQEKTA
FT                 FSTSQGHFQFTRMPFGLKNAPATFQRAMNNILSDYIGKICYVYLDDIVIVG
FT                 NNLEDHLENLSMVLKRLSDFNLKIQIDKCEFLRRETEFLGHVISPEGIKPN
FT                 PDKVKKILEWQLPSNEKQIRQFLGLSGYYRRFIKDYSKITKPFTQYLKKGQ
FT                 TVNTNDTQYIQAFTKLKETIASDQVLAYPDFSIPFILTTDASDYAVGAVLS
FT                 QVQDKIERPIAFGSRTLNKAEENYSTIEKEALAIIWAIRKYKPYLFGREFK
FT                 LFTDHKPLTFIKTSLKNNRILNWRLELENYQYTVVYKEGKTNVVADALSRK
FT                 VNEDVEEKQINSHNTEDIDTLHSADTSDDFFIKSTERPVNYYRNQLIFHVA
FT                 QTESDTKETPFNNYNKITISRRKFDEPTIVSILKKYHNGKQTAVHAPEEIL
FT                 SLIQETFRKHFSNVGFFIITHYQVEDVLDEEKQNELITKEHERAHRGMAEI
FT                 ENQLRRAYFFPQMLRKIRIAVKTCEICNVNKYERKPYNIKISPRPASEHPM
FT                 ERIHMDIFSINSCSFLSLIDSFSKFAQMIEMPSKNLVDVKTALAKYFGNFG
FT                 IPLKIVTDHETTFRSMQLKNFLDALGTNLTYASSSESNGQVEKMHSTVIEI
FT                 YNTNKHKFPNMATTELIPLCISLYNGSVHSASGYTPNEIVFNNTNQRNPIE
FT                 IQKQAEKIFAKVRTNIEASRQRMTKCNVRKEEPPMIEEGQNVYVKPNIRKK
FT                 LDPRSYKMQVHDVKERTFMNSRNVKRHKNKIKRLDKT"
XX
SQ   Sequence 4909 BP; 1851 A; 921 C; 847 G; 1290 T; 0 other;
     taattggcgc tgtagacagt tcaggaagtg ctttattaac agtggaaaag aacaggatta        60
     acaatccttt ctaaagtggt tcccgcattt tgcaccagca gctgaaggat tgaatccgtt       120
     gttcggttcg agggcccccc ggcacgacct gctaccacac gtaagtaaaa cttttttttt       180
     caccaagttt tactaacgca atatcgacac taccagatag gtcgaatttt gcaagtgttt       240
     attagtgtta ttttcgtgat aaacacgtgg tgagagacaa tttatcgagt ccgatccaca       300
     cataaatcta tcagcactac atgataggct gatcggatac tgatcactta ttgtcactcg       360
     tgataataaa tgccgaaaga gagcgagaaa gagaaagagc attttgacca acgcatcaac       420
     tggcgttcaa ctaacgtagc ttcagataca gattcagata gcaattccgt aacgatggaa       480
     gatcaaatcg tagagcaact taagcagttg accttgggac tctcacaaat aaacgagaga       540
     ctcaatattc aggaacagtg cattaaacta acacaagaac agatttgtgt tcaggcgaat       600
     caggtgacca acgtggaacc taccactaca agtaaggtag aagattttta taggattccc       660
     gatccgatca aatctctccc taattatgat ggaaacagaa aacaacttac cgcgtggctt       720
     gacactgcgg aaagtacatt gaaccttttt aaaggtagag tgaacagtga tgtgtacggc       780
     gtttacgtaa cagctgtttg caacaaaatc gaaggaaagg caaaggacat tatttgtgtt       840
     gcaggaaacc cgaaagattt cgacgcaatt aaagtaattt taattgatgc cataggagac       900
     aggcgtgaac tttcaacgtt caaatgccaa ttgtggcaac acacaatgac agaaggcatg       960
     acattgcata agtattacca gcaagcgaag gaaatcatcc aaaatattaa aacaatagca      1020
     aaacaagaaa aggattacag agacaattgg acagttatat gcaaatttat cgacgaagat      1080
     ggcttagcgg cttttgttgc tggtttgaga aaaccatatt tcggttatgc tcaagcagca      1140
     cgacccaagg acatcgaaga tgcctacaac tttttatgca aatttagatc acatgagcta      1200
     aattctaaca gaatgaacac tcatcaacca tctttcactg ctagttcctc acataagcag      1260
     gttccgcaaa ataaacaaaa ttttagtagc tcttcacgag tatatacggg ctatcagaag      1320
     aagcctgata accattaccc tcaaccgatg gatgttgata attcatcgag aacaaaaaat      1380
     accacgattt taccacgaac gattaacaac actgaaatca tgcataaaaa cgaagacaat      1440
     tcaaattttc atcgggaaat cccttccgaa aatcttactt gaaagagact ctagattttt      1500
     tgccatacat aactgtttac gatagctcta cagacaaaat tatacgctta cttattgata      1560
     ccggagcaaa tgaaaacatc cttaaacccg gaattatttt caattgtgaa caaaattgca      1620
     ctgcaaaaat atcaaatatt tttggaactc atactaccaa tacgaaagtc acatgcaaat      1680
     tattaggaca acaaattaaa ccacaaactt attatatcca tgattttcat aattattttg      1740
     acggtcttat aggctctaag tttatggccg aaactaatac tgtaataaat tactttacca      1800
     atactataac cattcaagga atagaaactg aatttaaaaa atattactca aacaaatatt      1860
     tttatcacac cattacagta acaacagatc gcagtggaga ttggtttgta ccatcttttc      1920
     aacaactttc ggaagacact ctaatagaac ctggcattta ttcctcgcta aataatagat      1980
     ctacaattaa tgtattaaca acaagcaaaa tcactccaca aatttccaaa cttaatatta      2040
     cagttaataa ctttgaaaca atttcaccaa tcccatttga ttctaatgcc attccgaaca      2100
     gagacatgat tgaaaaaatt attagaactg atcatttatc ggactttgaa aaagaaaaaa      2160
     tcatcaacat catattaaga catcatcaag ttcttcttaa aaataacgaa aaactcacga      2220
     gtacaaccgc agttaaacat caaataaata caaaagatga tagtcccgta ttcactaaaa      2280
     cgtacagata tccacacgta tacaaacagg acgtagaggc ccaaataaaa gaaatgctag      2340
     aaacgggtat aattaaacct tcgaagagtc cttacgcatc gcctatttgg gtcgtgccaa      2400
     aacggaagga tgcatcagga atacagaaga ttagagttgt aatcgatttt cgaaagctta      2460
     atgagaaaac gatatctgat aaataccctc taccagaaat cgaggatatt cttgacagtt      2520
     taggaaaatc gcagtatttc accattttgg atcttaaatc tgggtttcat cagattgaaa      2580
     tgcatcctga tcatcaggag aaaacagcat tttcgacaag tcaaggacat tttcaattta      2640
     ctagaatgcc attcgggcta aagaatgcac ctgcgacatt ccagcgtgct atgaataata      2700
     ttctttcgga ttatattggc aaaatttgct atgtatacct tgatgatata gtaatagttg      2760
     gaaataattt agaagatcat ttagaaaatc tttctatggt actcaaacgg ctttcagact      2820
     ttaacttaaa aatacaaatt gataagtgcg aatttttaag acgtgagact gagtttcttg      2880
     gtcatgttat ttctccagaa ggcataaagc caaatcctga taaggtaaaa aaaatattag      2940
     aatggcaatt accgtcgaac gaaaaacaaa tcagacaatt tcttggatta tcaggctatt      3000
     acagaagatt cattaaagat tattctaaaa ttacaaagcc gttcacacaa tacttaaaaa      3060
     aaggacaaac cgtaaataca aatgatacac aatacattca ggcgtttaca aagcttaaag      3120
     aaacgatagc atcagatcaa gtattagctt atcctgattt ttcaatccct ttcattttga      3180
     caactgatgc aagcgactac gcggttggtg ctgtcctttc gcaagttcag gataaaatcg      3240
     aacgtcctat tgcatttggc agcaggacgt taaacaaagc ggaagaaaac tattcgacaa      3300
     tcgaaaaaga ggctttggca attatatggg ccatcaggaa atataaacca tacctttttg      3360
     gaagagagtt caaactattt accgatcata aaccgcttac atttatcaaa acatcactca      3420
     aaaacaatag aattttgaac tggagattag aactggaaaa ctatcaatat acagttgtat      3480
     acaaggaagg caagacaaat gttgttgccg atgcattaag tcgtaaagtc aacgaggacg      3540
     tagaagaaaa gcaaattaac tcacacaata cagaagatat agatacatta cattcggcag      3600
     atacatcaga tgactttttc ataaaatcaa ccgaacgtcc agttaattat tataggaacc      3660
     aattaatctt tcatgtagct cagacagaaa gcgatacaaa agaaactcct ttcaacaatt      3720
     acaacaaaat aactatcagt agacggaaat tcgatgaacc tacaattgtt tcaatcttaa      3780
     aaaaatacca taacggaaaa caaactgcgg tgcacgcccc agaggagata ctaagcctta      3840
     tacaggaaac gtttaggaaa cattttagta atgttggatt ctttattatt actcactacc      3900
     aagtcgaaga cgtgttagac gaagaaaaac aaaatgagtt aataaccaaa gaacacgaaa      3960
     gagcgcacag aggaatggca gaaattgaaa atcaattacg tagagcttat ttttttccac      4020
     aaatgttaag gaaaataaga attgccgtta aaacatgcga aatttgtaac gtaaataagt      4080
     atgaacgaaa accgtataat attaaaatat cgccgagacc cgcatcagag catccaatgg      4140
     agagaattca catggatatc ttttccatta actcctgcag cttcctgtcg ctgatcgatt      4200
     cattttcaaa attcgcgcaa atgatagaaa tgccatctaa aaacctggtt gatgtgaaga      4260
     cagcgttagc gaaatacttt ggcaattttg gaataccgtt gaagatcgtc acagaccatg      4320
     aaacgacatt tagatcaatg caactaaaaa atttcttgga cgcgctgggt acaaatttga      4380
     cgtatgcatc atcatcagaa agcaatggtc aagtggaaaa gatgcattct acagttatag      4440
     aaatttataa taccaacaaa cataaatttc caaatatggc tacgaccgag ctcattccgc      4500
     tatgtatatc attatacaat ggatcagtac actccgcttc cggttataca ccaaacgaaa      4560
     ttgtattcaa taataccaat cagagaaatc ccatcgagat acaaaaacag gcggagaaaa      4620
     tatttgcgaa agttagaacg aatatcgaag catccagaca gcgaatgacc aaatgtaatg      4680
     tacgtaaaga agaaccacca atgattgaag aaggacagaa tgtttacgtg aagccaaaca      4740
     taagaaaaaa actagaccct cgatcataca aaatgcaggt tcacgatgta aaagaaagaa      4800
     cctttatgaa ttctcgtaat gttaaacggc ataagaataa gataaaacgt ctagataaga      4860
     cttaaaatta cgaacgggga cgctcgttct ttacccccgg gaggaatta                  4909
//
ID   Gypsy-12_AnFu-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-231
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2825-2825 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 231 BP; 70 A; 34 C; 49 G; 78 T; 0 other;
     tacgtattat gtaatattat acgagtacta taacgattta tagcaaagca gatggcaaca        60
     cggccagaat aacgataggc ttcgagctca acgcgacggt taagctcgac ctctttccta       120
     tttagctctt gtgcgaacac gttgttcaga gtatcaaagg tcaaattgtt agtttttttg       180
     gttaggttta gtttaggtta gatgtagaat aagtttagtg tttaataaat a                231
//
ID   Gypsy-12_AnMe-I repbase;    DNA;    INV; 4518 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4518
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6824-6824 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4505
FT                 /product="Gypsy-12_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTIEANGAGVHPDEDQRRSSFGRPSALDPVQQPGGP
FT                 VIGGVTQHHAGTYPEQAVNFGRDDRPAPSHSGVPPPSHFAAQHGSSQPLPT
FT                 GSMISGSSTGANTMAETLQLLQQQMAQQQQLLNQIMCQRMYTLNPAVPSFQ
FT                 PEQVIEALSRNISEFRFDGESGITFRAWFSRYDELFKKDAARIDDAAKVRL
FT                 LLRKLGPIEHDRYLSFILPARASDFHFDETIAQLETLFDTRESLLSKRFKC
FT                 LQLHKKSSEDHLTFACRLNKACVDFELSKMGEEQLKCLLFVCGLKDESDKD
FT                 MRTRMLARIEDKPDVTLQQLSAECHRIVNLKRDSAMIESNAQENVFAVQSR
FT                 EQRFQRSPPTQLRKPRYNCFKCGDLHWVSECPFYNNKCNDCNRFGHKEGYC
FT                 QSSQNHSQSYKPKWKPGFKNRNVANTKVVKVNVFNVNNHRRFVDITLNAMP
FT                 VRLQLDTASDISIVNRQTWERIGRPRLDPASVIAKNASGEELAIDGEFYAK
FT                 VCVGEQTSQNLIRVTGVNLMLLGADLVDALKLGATPMDQFCTQVMTCTSQL
FT                 QQRFNTVFNGKGFCSKANIQLILKDNCRPVFRPPRPVAYAMQEAVKSELDR
FT                 LEQLGIITPVNFSEWAAPVVVVRKSNGAIRICGDYSTGLNDALQPYDYPLP
FT                 LPEDIFARLANSIVFSKIDLSDAFLQVEIDPRYRNLLTINTHKGLYNYNRL
FT                 PPGVKIAPAAFQQXIDAXLTGLNGVSGYLDDIIIGGKTQQEHDEILVNVLK
FT                 RIEEFGFTIXADKCAFNVKEIKYLXHIIDKRGLRPNPDKIXAIMKMPEPID
FT                 VSSVRSFLGAINYYGKFVPNMRNLRYPLDNLLKNNHKFEWTTECKAAFDSF
FT                 KKXLSSNLLLTHYDPRQQIIVSADASSIGLGATICQKYPDGSIRVVQHASR
FT                 ALTKTEQAYSQIDREGLAIIFAVVKFHKMIYGRHFYLQTDHRPLLRIFGSK
FT                 KGIPTYTANRLQRFALTLLAYDFEIQYVRTEDFGNADILSRLISRHEKPES
FT                 ECMIASVDVEKDLAYVAINSLSAFPLTHEEVASATFNDTLLRKVYGFVKHG
FT                 WPRDMQYGKDLSCFYSRKDALTIIQGSIIFGERVVIPAILQNRCLDQLHKG
FT                 HPGIVRMKAIARSYVYWPSMDVDIVDLVNSCQACQSAAKAPPKEKIATWPE
FT                 TLAPWERIHIDYAGPVDGFYFLVVVDSFSKWPEIIKTSSTTAAATVRMLHG
FT                 LVSRFGSPVTLVSDNGPQFTSSVFKEFCDRHGINHMTTAPFHPQSNGQAER
FT                 FVDTLKRALRKIRNSDLSLDEALETFLQVYRATPHPLLERHKTPAEIMFGR
FT                 PIRTELNLLRPTKTTQLQLASVSRTFQIGEPVFMKYFTHNAYKWISGKVEK
FT                 RLGNVMYEIKTADSKIHRRHINQLRKRNVYSEHEHHPDGLPLDVLLSEWNL
FT                 IGTHHTIEHAALPIPLTNTDIDILPNQRPRISRTLERPPRRSSRIRRPPRR
FT                 FESYQRI"
XX
SQ   Sequence 4518 BP; 1365 A; 948 C; 1023 G; 1174 T; 8 other;
     gtggcgacga gtctaacgtt tttctgtttt tattgtttta ttttacccac gcgacgaaaa        60
     ttccgcgacc acaacgcaaa cgacggagga tgagcaccat tgaggcaaac ggtgcaggcg       120
     tgcatcccga tgaagatcaa cggcgttcgt catttggacg gcccagtgca ttggacccag       180
     tgcaacaacc cggcggacct gttattggcg gtgttacgca gcaccatgcc ggtacttatc       240
     ctgagcaagc tgtaaatttc ggccgtgatg accggcctgc gccatcgcat tcgggtgtcc       300
     ctccgccatc gcactttgct gctcaacatg ggtcatcgca accattgcca acggggtcga       360
     tgatctcagg ctccagcaca ggcgccaaca cgatggcgga aacgttgcag ctgctccaac       420
     aacagatggc acagcaacag cagttgctga atcaaatcat gtgccagcga atgtatacgc       480
     tgaatcctgc cgtccccagc ttccagccgg agcaagtgat cgaagcgctc tcccgcaaca       540
     ttagtgaatt tcgtttcgat ggtgagagcg gcatcacttt cagagcgtgg ttctcgcgct       600
     acgacgagct gttcaaaaag gatgcggctc gtatcgacga tgcagcgaag gttcgtctac       660
     tgctacgcaa gctcggcccc attgagcatg acaggtattt atcgttcatt ctacctgcgc       720
     gcgctagtga tttccatttc gatgaaacga tagcacagct cgaaacgtta tttgatacac       780
     gcgaatcact acttagtaaa cgttttaagt gtctccaatt acacaaaaaa agtagcgagg       840
     atcatctcac atttgcgtgc cggctcaaca aagcgtgtgt tgattttgaa ctgagtaaaa       900
     tgggagaaga gcagttaaag tgtttacttt tcgtgtgcgg actcaaggac gagtcagata       960
     aagacatgag gactaggatg ctcgcgcgta tagaggataa gcctgatgtt acgttacaac      1020
     aattatcagc tgagtgtcat agaatagtta atttaaagcg ggacagcgcc atgatagagt      1080
     cgaatgcgca ggaaaatgta tttgccgtac agtcgcggga acagcggttc caacgttcgc      1140
     caccaacaca attacggaag ccaaggtata attgctttaa gtgcggtgat ttacactggg      1200
     ttagtgaatg cccgttttac aacaacaaat gcaacgattg caaccgtttc ggtcataagg      1260
     aaggttattg ccagtcaagc caaaatcata gccaaagtta taagccaaag tggaagccag      1320
     gatttaaaaa tcggaatgta gctaatacca aagtcgtgaa agtcaatgtg ttcaatgtta      1380
     ataatcatcg tcggtttgtt gatataacgc ttaacgctat gcctgtccgt ttgcaattgg      1440
     atacggcatc tgacatcagt attgtgaata gacagacatg ggagcgaata gggagacctc      1500
     ggttagatcc agcatcagtg attgcaaaga atgcctcagg agaagagctt gccattgatg      1560
     gagaatttta tgccaaagtg tgtgtaggag aacaaacatc gcagaattta ataagagtaa      1620
     ctggagtgaa tttaatgctt ctgggagcag atttggtgga tgctttaaaa ctaggtgcaa      1680
     caccaatgga tcaattttgc actcaggtga tgacgtgtac tagtcaactt cagcagcggt      1740
     ttaacacagt ttttaacgga aaaggatttt gttcgaaggc caatatacag ttaatattaa      1800
     aagataattg tcgacctgta tttcgtccac caagaccagt agcgtatgca atgcaggagg      1860
     cagtaaaaag tgaattagac cggttagagc aacttggaat cattactccg gtgaattttt      1920
     ccgaatgggc tgcaccagta gtcgtagttc ggaaatcgaa tggtgcaatt cgaatctgcg      1980
     gggattattc aacggggttg aatgatgctc ttcaacccta tgactacccg ctccctctcc      2040
     cggaggatat ttttgcgcgt ctggcaaaca gtattgtctt tagtaaaata gatctttccg      2100
     acgcattctt acaagttgag atagatccgc gctatcgtaa tttgcttaca attaacacac      2160
     acaaaggtct atacaattac aatcgccttc cacctggcgt taagatagcc cctgctgcat      2220
     ttcaacaaan catagacgca wtgttaactg gattaaacgg tgtttcaggc tatttagacg      2280
     acatmattat tggaggtaaa actcagcagg agcacgatga aatattggtt aatgtactta      2340
     agcgaatcga agagtttggt tttaccataa gwgcggataa atgtgctttc aacgtcaaag      2400
     agataaagta cctgngccat attatcgaca agagaggtct acgccctaac ccggacaaaa      2460
     tcnaagcgat catgaaaatg ccagagccaa tagatgtatc gagcgtacga tctttcctgg      2520
     gtgccataaa ttattatggc aagtttgttc ctaacatgcg aaatttgcgc tatccgcttg      2580
     ataatctctt gaaaaataac cataagtttg agtggactac agaatgtaag gcmgcatttg      2640
     attcttttaa gaaantattg tcatcaaatc ttttactcac acactatgat ccgaggcaac      2700
     aaataattgt atcagcagat gcttcctcaa tcggactcgg agctactatt tgtcagaaat      2760
     acccagatgg gtcaataaga gtcgtacaac acgcatcgcg agctctaacc aaaacagagc      2820
     aggcatatag tcagattgat agagagggtt tagcaataat ttttgctgtt gttaaatttc      2880
     ataaaatgat ttacggcaga catttttacc tccaaaccga ccatcgccca ttattaagaa      2940
     tattcggctc aaagaaaggc attcctacat atacagccaa tcgtttgcag cgttttgcat      3000
     taaccctgct cgcctatgat tttgagattc aatatgtacg cacggaagat tttggaaatg      3060
     cagatatttt atcaagattg atcagcagac atgagaagcc tgaatctgaa tgcatgatag      3120
     ccagcgtgga tgtagaaaaa gatttagcgt atgtagcaat taactcgcta tcagcatttc      3180
     cgctcactca tgaagaggtt gcaagtgcta cgtttaatga tacgctctta agaaaggtat      3240
     atggatttgt gaaacatggt tggcctcgcg acatgcagta tggaaaagat ctatcatgtt      3300
     tttatagtcg gaaagatgca ctaacgataa tacaaggaag cataattttt ggagagaggg      3360
     tagtgatccc agcaatattg caaaatcgat gtcttgatca gctccataaa ggtcacccag      3420
     ggatagtccg gatgaaagca atcgctcgta gctatgtgta ttggccgtca atggatgtag      3480
     atatagttga tttggtcaac agttgccagg catgtcagtc tgcagcaaaa gcaccaccga      3540
     aggagaaaat agcaacttgg ccagaaacac tagcaccctg ggagagaatt catatagatt      3600
     acgcagggcc agtcgacggg ttttatttct tggtagtagt cgactcgttt tccaaatggc      3660
     cagaaataat taaaacttca agcactacag cggctgcaac tgtgagaatg ctacatggat      3720
     tggtatcacg ttttggatca cctgttacgt tggtcagcga taatggacca caattcacaa      3780
     gcagtgtgtt taaagagttt tgtgatcggc atggaataaa tcatatgact acagccccat      3840
     ttcatccaca atctaacggg caagccgaaa gatttgtgga cacattgaag cgagcgttac      3900
     gaaaaattcg aaacagtgat ttatcattag atgaggcttt ggagacattt ttgcaagtat      3960
     atcgggctac accgcaccca ttattagaac ggcataaaac acctgctgaa atcatgtttg      4020
     gtcgtcccat acgtaccgag ttaaatctgc ttagacctac aaaaactact caattgcaac      4080
     tagcttccgt atcacgcaca ttccaaattg gtgaaccagt atttatgaaa tatttcacgc      4140
     acaatgcata caaatggata tccggcaaag ttgaaaaacg gctagggaat gttatgtatg      4200
     aaattaaaac agcagatagc aaaatccata ggcgtcatat caatcagctt cgcaagcgta      4260
     atgtatactc agaacatgaa caccatcccg atggattgcc gttagacgtt ttgctaagtg      4320
     agtggaattt aataggcaca catcatacga tagagcacgc agcattgcct ataccgctaa      4380
     ctaacaccga catagatatc cttcccaatc aacgtcctcg aattagtcgc acgctggaac      4440
     gacctcctcg tcgatcttct cgtattagaa gaccgccacg taggttcgaa tcgtaccagc      4500
     gaatttaaag gaaggaga                                                    4518
//
ID   Gypsy-12_AnMe-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-309
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6849-6849 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 309 BP; 82 A; 60 C; 82 G; 85 T; 0 other;
     tgttgtgatc gtattgttgc tcacccctgg atcgcggctg gagacagccg ccgataccag        60
     tcaggcggcc gacgcaacga gagaggcgaa actagatagg caaggcgaaa tctggagaat       120
     taggagaatt agaattagga gaattagaat taaggaattg ctctctctct tccgatctgg       180
     ctttggtggc gaacggttgt gtgtcagcgc ggcacggatg ttatcatttt acttataata       240
     taagttgtaa attgtagttt gtgttcgcgt cattattatc aacgcttcat cggtcatccg       300
     aacacaaaa                                                               309
//
ID   Gypsy-12_AnSt-I repbase;    DNA;    INV; 4446 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4446
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 795-795 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           406..4428
FT                 /product="Gypsy-12_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSNEELIATLVDECTRVGLTKKCETRGLAMSGTKEEL
FT                 AARIVEYDRQNQADGVLEASVYGDVENFTDAMPATVIIGFNDVKDALNPFT
FT                 GKGESVVAWILDFEDQCKVFCWSELHKFVYAKRLLEGPAKAFVRSLPNVAS
FT                 WKQLKSALIEEFEETTSSASIHELLRQRKKKNDESFLEYVYAMVEIGKRGK
FT                 VDEVSLCEYVVRGIEDDPRNKACLLQCNSLRELKVQLKVYEKLRQQMNLHK
FT                 IKNNGQIPRVQKEGSAVRRVADKYDGCFNCGDKFHRSPMCPNKPKGTKCFR
FT                 CNSFGHIAKQCTNARKNEEPRNVCVVTTVPNVPVTIGSVVYNAAVDTCSEA
FT                 TLLREDALRSIPRKEQQLKKSSLRLYGLGGNGMTALGEVCVPAIVDGETYN
FT                 INFAIVPVFALNTPMLLGMDFLCTKKFSITNEGVKINKLDTRYEDNEERGD
FT                 DENGTTTTKPDYDESAKWMCEIQIKTNELEVPTTYREEVSDMIANYHPIKI
FT                 ATGNNELIIRVSDEEPVRACPRRLAPMEREIVKKQIDEWLRDGIIRVSNSP
FT                 YASAVVVVPKKDGTRRVCVDYRDLNKKIVRDSYPMPIVEDQIDKLVDARVY
FT                 STLDLKNSYFHVPIAEKSRHLTSFVTQEGQYEFCRAPFGLCISESAFGRFI
FT                 NCMLQVLVNDGTILTFVDDIIIPSKDEKEGMKSLRRLLDVAEKVGLKFNWK
FT                 KCAFLQRRVEYLGYTIYEGKIEPSECKVEKVKGFPMPKTSKQMQRFYGLTS
FT                 YFRKFVHRFAERARPLSQLLKKDAVFHANDEVQRAFEDLKTALCEHPVLRI
FT                 FKPGLETEVHTDASKEALAGILMQRAEDDNKFHPTYFFSRLTNNAEKNYHS
FT                 FELEALAVVETLKKFRCYLLGQRFKIITDCIAFKQSVAKKNPDARTSRWIV
FT                 ALAEFEYEIEHRAADRMKHVDALSRVNVMAISSIISKKVAAAQREDDEIQK
FT                 ILERAGQNRKLDDYCVKNGIVYKGDGNLRRLLVPEVMQVEIIKEAHEQGHF
FT                 GVKKMKERIDAEYFIPGLEAKIEKCIASCVRCILGEKKRGKREGSLYPIPK
FT                 GDVPLDTFHIDHLGPMPSTRKSYNYIFTVVDAFSKFLWLFPVKSTNAEEAV
FT                 KKLNVIAQTFGYPKRIISDQGTAFTSSLFEQFCKNNTIELHRIVTGVPRGN
FT                 GQVEIMHKTIIPMLTKLSLDKPDEWFKHVDKVQTLMNSSWHRAIRMTPFEV
FT                 LIGVKMKKKNELELVKMLEEEMQGNFMEERDGLRKIARENIAKIQEQNRKY
FT                 YNLRRRDAKRYQVGDFVALPVTQFVVGRKVKPKYYGPYEVTKMMPNDRYEV
FT                 RKVDAETEGPRNTTTSADMLKPWPQSSRL"
XX
SQ   Sequence 4446 BP; 1442 A; 814 C; 1204 G; 986 T; 0 other;
     tgggggctcg tccgggaaga ggcagtgaac gataacgaag aaaactatga cgacgcgagt        60
     gtttacgacg atgtgaacgt taaagaagaa gacgcaagtg tatacgacag tgtgtgaacg       120
     ttaaagaaga cgacgaagac gacgaagtgt gtgcacctaa cgaagacgac gaagtatgtg       180
     cacttaaaga agacgacgaa gacgacgaag tgtgtgcatc taaagaagac gacgaaggcg       240
     acgaagtgtg tgcatctaaa gaagacgacg aagtgtgtgc gctcttgaag aagattaaag       300
     cgacgtgcag aacatatcac tgtagtgtac cagatcgaaa agaagtgaca acgtgtgtgt       360
     gtgacctgtg aggaagcaaa gtgaagtgtg cacgaggacg tgaagatgag taacgaagag       420
     ttgatcgcga cgctggtaga cgagtgcacg cgtgtggggc tgacgaagaa gtgtgagacg       480
     cgaggactag cgatgtcagg aaccaaggag gaacttgcag caaggatcgt cgagtacgat       540
     cgacaaaacc aagcggatgg cgttttggag gcatccgtat acggcgatgt ggaaaatttt       600
     acggacgcaa tgccagcaac agtgatcatc ggtttcaacg acgtgaagga tgcgctaaac       660
     ccttttacgg gtaaagggga gagtgttgtg gcgtggattt tggactttga agaccaatgc       720
     aaggtgtttt gctggtcgga gctgcataag tttgtatatg cgaaacgttt gctggaaggc       780
     ccggcaaaag cctttgtgcg gagcttgcca aatgtcgcgt catggaagca gctaaagtca       840
     gcgctcatcg aagagttcga agaaacaaca tcgagtgcta gtatccacga actcttaagg       900
     caaagaaaga agaagaacga cgaaagtttc ctggaatatg tgtatgcgat ggtcgaaatc       960
     ggtaagcgag gaaaagtaga tgaagtgtca ctgtgtgagt atgtagttcg cggaatagag      1020
     gacgacccac gaaataaagc ttgccttctg cagtgcaatt ctctaagaga attgaaagtg      1080
     caactcaaag tgtacgagaa gttacggcag caaatgaatc ttcataaaat caagaacaat      1140
     ggccagattc cccgagtgca gaaagaaggc agtgcggtca gacgagttgc ggacaaatac      1200
     gacggttgtt ttaattgtgg tgacaaattc catcgatcac caatgtgccc aaataaaccg      1260
     aaaggcacca aatgttttcg gtgcaatagt ttcgggcaca tcgcgaaaca gtgcacgaat      1320
     gccaggaaga acgaagaacc aaggaatgtt tgtgtagtta ccaccgtgcc aaatgttccg      1380
     gttactatcg ggtcagttgt ttacaatgcg gcagtggata cgtgcagcga agcaacacta      1440
     ctaagagaag acgcgctccg gtcaattccc cgaaaagaac agcaattgaa gaagtcatcg      1500
     ttacgcctct acggtctcgg cggcaatggc atgacagcat tgggagaggt atgtgttcca      1560
     gcgatcgtgg atggtgaaac gtataatata aattttgcga tagttccagt attcgcatta      1620
     aatacaccaa tgctgctcgg gatggatttc ttgtgtacga agaaattctc catcaccaat      1680
     gaaggtgtta aaatcaacaa gctggacaca aggtacgaag acaacgagga aagaggtgac      1740
     gatgaaaacg gaacgacgac gacaaagcct gattacgacg aatcagcgaa gtggatgtgt      1800
     gaaattcaga taaaaaccaa cgagttggaa gtgcccacaa cgtaccgtga ggaggtgagt      1860
     gatatgatag ctaactacca cccgatcaag atcgccacgg gaaataatga actgattata      1920
     cgcgtgagtg acgaagaacc agtgcgcgcg tgtccgagac gcttagcacc gatggaacgg      1980
     gaaatcgtta agaagcaaat cgatgagtgg ttacgcgacg gaatcatacg agtgtctaat      2040
     agcccatacg caagtgcggt agtggttgtg ccgaagaagg atggtacgcg aagagtttgc      2100
     gtcgactacc gagatctcaa caagaaaata gtgcgcgatt cgtacccaat gcctatagtc      2160
     gaagatcaga tagacaagtt agttgatgcg cgggtgtatt ctacgttgga cctcaagaat      2220
     tcatattttc acgtacccat cgcggagaaa agtcggcatt taacatcatt tgtgactcaa      2280
     gaagggcaat acgaattttg tcgtgcgcca ttcgggctgt gcataagtga aagtgcgttc      2340
     ggacggttca tcaattgtat gttacaagtg ttggttaatg acggtacaat attaacattc      2400
     gtggacgata tcatcatacc ttcgaaagac gaaaaagaag ggatgaaatc cctaaggcgt      2460
     ttattagacg ttgcagaaaa ggttggactt aagttcaatt ggaaaaagtg tgcttttctg      2520
     caaagacgag tggagtatct gggatacacc atatacgaag gcaagatcga accatccgag      2580
     tgcaaagtgg aaaaagtgaa aggctttcca atgcccaaaa catcaaagca gatgcaacga      2640
     ttttatggac tgaccagcta cttccgaaaa ttcgtccatc gatttgcgga aagagcacgt      2700
     ccattatcac agttgctaaa gaaggatgca gtttttcatg ctaacgacga agtacaacgc      2760
     gcattcgaag atctgaagac ggccttatgc gaacatccgg tactgcgtat cttcaaacca      2820
     ggcctggaaa cagaagtgca taccgatgct agcaaggaag ctctggctgg catactcatg      2880
     caacgcgcag aagacgacaa caagtttcat ccgacgtatt tcttcagccg tctgaccaac      2940
     aacgccgaga agaattacca ctcgttcgag ctggaggcgc ttgcagttgt ggagaccctg      3000
     aaaaagttcc ggtgttacct gctgggacag cgattcaaaa tcatcacaga ttgcatcgct      3060
     tttaagcaat cggtggcgaa gaagaatcct gatgcgagaa ccagtcgatg gatagtggcg      3120
     ttagccgagt ttgagtacga gatcgagcat cgtgcagcgg acagaatgaa gcacgtggat      3180
     gcgttgtcgc gcgtgaacgt gatggcgatt tcatcgataa tcagcaaaaa ggtggcagca      3240
     gcacaacgcg aagatgacga gatacagaaa attttggaaa gagctggaca aaatcgtaag      3300
     ttggatgatt attgtgtaaa aaacgggata gtatataaag gtgatgggaa tttaaggcgg      3360
     ttacttgtac cagaagtaat gcaggtagag ataattaaag aagcgcatga gcagggacac      3420
     ttcggagtca agaagatgaa agaaagaatt gatgctgagt attttatacc tggattagaa      3480
     gcaaagatcg aaaagtgtat cgcctcgtgc gtgaggtgta tattaggaga aaagaaacgt      3540
     ggaaaaagag agggtagctt gtatccgatt ccgaaggggg atgtgccctt ggatactttt      3600
     cacattgacc atcttggccc aatgccgtct acaagaaagt cttataatta catatttaca      3660
     gtggtagacg cattttcgaa attcttgtgg ctgtttccag taaaatctac taacgcagaa      3720
     gaagcagtga aaaaattgaa tgtcatagca cagacgtttg gatatcctaa gagaataatt      3780
     agtgatcagg gaactgcgtt cacctcaagc ttatttgaac aattttgtaa gaataatacg      3840
     attgaattac atagaatagt gacgggagtt ccacgaggaa acgggcaggt agaaatcatg      3900
     cataagacca ttattcccat gttgacgaaa ctatcattag acaagcctga cgaatggttt      3960
     aaacacgttg ataaagtgca gacacttatg aacagtagtt ggcatagagc tatacggatg      4020
     acaccatttg aggtacttat aggcgtaaag atgaaaaaga agaatgaatt ggaattagtc      4080
     aagatgctag aagaagagat gcaaggtaat ttcatggaag aacgtgacgg tttacgtaaa      4140
     attgcacgag aaaatattgc gaagatacaa gagcagaata ggaagtatta taatctgcgt      4200
     agacgagatg cgaaacgata ccaagtgggc gattttgttg cattgccggt gacacaattt      4260
     gtagtaggtc gaaaggtcaa acctaaatac tatggcccat atgaggtgac aaagatgatg      4320
     cctaatgatc gctatgaggt gcgtaaggta gatgccgaga cagaaggccc gcggaatacg      4380
     acaacttcag cagatatgtt aaagccttgg ccacagtcga gccgtctgta gggtcaggaa      4440
     aggccg                                                                 4446
//
ID   Gypsy-12_AnSt-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-196
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 808-808 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 196 BP; 66 A; 46 C; 40 G; 44 T; 0 other;
     tgtaggatga gtgtcactag agtgacccga atacaaaaaa aaaagagagc gatcggtcac        60
     tcgggaatgg gtgtcgtcac gcggatataa aaacgagcgt caaagcctaa ttaatcagtc       120
     tcccgctaat cgccaaccaa tgaactgtct cgacccacca aaaaattgaa cagagtattc       180
     tctttctctt tctaca                                                       196
//
ID   Gypsy-12_BrCo-I repbase;    DNA;    INV; 6459 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-6459
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1411-1411 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1242..2468
FT                 /product="Gypsy-12_BrCo-I_1p"
FT                 /translation="MTTWTQLSTKLDEHRIEFERIYKCLSVSIKRKIQRET
FT                 FDKHLQDIIEVYNAATKLIRTHDLQEDHLTYCTEFHTKIRDRLLKLFGTLK
FT                 VHIVVPPGVKEIDPKVLDKGDSDSDSEMVQSAEEFLALAGKTISRNYAGDP
FT                 LALTAFINSIKLLEKMAGTTHVTLLITYLMTKLEDKAMESVPEDPQTIQEI
FT                 IDGLKVGIKPETSKVVKSRLQALKFDRFKVQDFALEATKLSEALQRALVLE
FT                 GVGKVKAREMCVDETIDMCRANARSDLIKAVLSASQYNDPDEVVAKLILES
FT                 STEKQEKQVLAYKAQFRGKRGKGRGRGGYGNYGNNYGNYNKWNGGNNNYHQ
FT                 NGNGRGNNGRGRSWNRGRGRGRGSYQNYQNYPNHSVRIVEALGNEEAPQRY
FT                 QQLGETTAMMPYQSQ"
FT   CDS           2381..6115
FT                 /product="Gypsy-12_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NSRGFGKRGSPSAIPAAGGNNSNDAVSVSIVQRKVLS
FT                 MNPNYSDFIVLSSSISNKQCTFLIDTQADITLLKICAVRPRALLDVENLID
FT                 ITGITEDPITTLGCTNATLGNDDFRVNFPVHVVPNEFNIPSDGILGKDFMK
FT                 HFRCNINYGDMTFRFTLNEQMITVPIREGPEVNTIVLPARSEVIRQFNLKK
FT                 EVLEPQWVDSWEISAGVFTARTIISSAQPLIRILNTTDKVQIMKNDRLPIQ
FT                 KLSDYKVYTTKKEISSKERTETLLKILENKVPSYAKEQLFPLIEEYADVFA
FT                 LETDKMTTNNFYEQKLRLKDDTPVYIKNYRTPHSQINEIEAQVNEFLKNDL
FT                 IEPSASEYNSPLILVPKPPLNGRERWRLCLDYRQVNKKLVADKFPLPRMDQ
FT                 ILDSLGNAKCFSVIDLFQGFHQVPLEKNSRDITSFSTSTGSYRWKVLPFGL
FT                 NVSPNSFTRMMTIAFSGIPPEQAFLYIDDVVVIGKSEKHHLQNLKAVFQVL
FT                 RDRNLKIHPHKCKFFEPEVTFLGHLCTPDGILPDPRKHEKVKNYPVPTDKN
FT                 AAHRFVSFANYYRRFIPHFATIAKPLNNLTKKDVTFEWTEQCQESFDTLKE
FT                 ILTKPPVLAYPDFSKTFIVTVDASITGCGAVLSQLHDDNDLPIYYASKSWS
FT                 KADAVKSTPIQECLAIHFALTQFRPYVYGVPFRVRTDHKSLIYLFTHKTLS
FT                 PKLIRIRLDLEGYDFTIEHISGAKNVVADALSRLNIKDLLDLYGKTKTVYV
FT                 MTRSKTRNLKKENEMTTNENLNKTQEISYVPVIEQLNAHINKKIPRIMCTR
FT                 TEGSKDEVIELNIYENYKKLISMKVPVEIRNDLSILEKVINSLQEIAIKKN
FT                 FNEIQWSLNDIMFKFVSINVFKEICKNKLNKLRIVLIKSPILINDKTKQNE
FT                 LLMYFHDNPIFGGHVGHKKLYANLRSYYAWKGMRRDVASFVKSCTKCKLTK
FT                 VSVKNKEALVLTNTPQAPFDVVVIDTIGPLPTSLNGNRYAITLICDLSKYL
FT                 VIIPIPDKQALTVARAIFNNFVLIFGLMKQVITDLGTEYVNSVLERLWVLF
FT                 HVTHSKSTAYHHQTVGTAERSHRTFNEYVRTYISGQLDNWEEYSKYFSFCY
FT                 NISHHASYDFKYSPYELIFCKSPVLPFDWMDGRIDPIYNIDDFSREAKCRL
FT                 QRAHVDARNLIDKMKLRNKMNYDRSAKPIELELNNKVKLFKEPYDKHSERY
FT                 DGPFIVKDIQGSNVTITDGDKFLKTVHKDRVRKYE"
XX
SQ   Sequence 6459 BP; 2325 A; 1053 C; 1254 G; 1827 T; 0 other;
     tggcgacagt gacagtgata taaaaaaaaa aaaaaaacga taagtggtcg ggttagtgaa        60
     accgttgtac tgcaaagtaa ataattatta ataaagtgaa tcattaaatg aataaattat       120
     gggcacatct gactcaaagc cgcaaaccgc cacaacggat ggtactaaca gtaatactga       180
     tgttaatagt gtcaatataa ttcaagaatt ttccgaacac aaaaccagca ctggcatttg       240
     tttattaata atagtggtac tattggcaat tcactttatc tataaatttt acacgttaca       300
     taaaaagtgt atcgtaaagc gtgagagaca agtacgccaa atttgaatat tgaatataaa       360
     aacagaaaaa taaaccacga acaatatttg acgggatttg aaaaataaat gaacaaataa       420
     cattactgga attgatggac atccaagagc acaggcacga aaattcgtac aaatttggtc       480
     cgtggggtcc gtggaaaaca ggagaacatt gctaagtcaa cagcgaaggc acagaaaatc       540
     atagatcgca caggcgcgta aggtcgtaca aaatttggcc ctgggtaaac agatacacat       600
     agcaacaggt atgagttatg gaaattaaaa tttgattttt tttttataag aaaatgtttt       660
     aaattttgaa gtttttatat gtaacgacac gcgattgaaa attatatttt atgcttacgt       720
     tttaaaatcg atgttatatg agaacgattg tttattttgc gacaggatgt tgaaatatta       780
     aatacgacga aaagttgttc taattaaaaa gaaagaaaaa atattttttt ctgatgtcag       840
     cgaatttaac acgcgcagtt ttgaaattct ttacacgcgc agttttggaa ttattttttt       900
     tttcgcttac aatcggtatt tggtattatt ttatgaaaga aatacgatac taagtttggg       960
     acaggatgta taaattttga aaataattgc aacattgtga ttgataaagc aaacaaagcg      1020
     tatttaatgg tacgaaatgg aaacgtttga atcaaagcct ttatttgatt taacggaatt      1080
     tttaattgtt tatttttcaa ttttattttt cttgatggtc ttgtcattgg ttttaatttg      1140
     gttttattgt caagcccgaa cgaatagatt catttgatgt gtttatattg ttggaaatct      1200
     ggtgaagttg atacgaataa gtatttttta tttggcaaag tatgactaca tggacacaat      1260
     taagtactaa attagacgaa cacagaatag aatttgaaag aatttataaa tgcctgagtg      1320
     tttcaattaa aaggaaaatt caacgtgaaa ctttcgataa acatttacaa gacattattg      1380
     aagtatataa cgctgcgaca aagttgataa gaacgcacga tctgcaagaa gaccatttga      1440
     cttattgtac ggaatttcac acaaaaatta gagatcgtct tctcaaattg tttggaactt      1500
     tgaaagtaca cattgtagta ccccccggag taaaagaaat tgacccaaaa gtacttgata      1560
     aaggtgattc agactcagat tcagaaatgg tacaatcagc tgaagagttt cttgccttgg      1620
     caggaaaaac tatctctagg aattatgcag gtgacccatt agcccttaca gctttcataa      1680
     actctatcaa acttctcgag aagatggcag gtacgacgca cgttaccctt ttgataacat      1740
     atttaatgac taaattggaa gataaggcta tggaatcagt ccctgaagat ccacaaacta      1800
     ttcaagaaat aattgatgga cttaaagtag gcattaaacc tgagacgtct aaagtagtaa      1860
     agagtaggtt acaggctttg aagtttgaca gattcaaggt tcaagacttt gcccttgaag      1920
     cgacgaaatt gagtgaagca ctccaaagag ctttagtgtt ggaaggtgtt ggtaaggtca      1980
     aagcacgaga aatgtgtgta gatgaaacta ttgacatgtg tcgggcgaat gctcgaagtg      2040
     atctgattaa agccgtatta tcagcgtctc aatacaatga tcctgatgaa gtagttgcta      2100
     aactgatttt agaatcgtct accgaaaagc aggaaaagca agtgttagca tacaaggcac      2160
     agtttagagg taaacgggga aaaggtagag gccgtggtgg ttacggtaat tacggtaata      2220
     attatggaaa ctataataaa tggaatggtg gaaataataa ttaccatcaa aacggcaatg      2280
     gtcgaggtaa taatggtaga ggaagatcct ggaatcgtgg ccgtggtcgt ggtcgcggaa      2340
     gttatcagaa ttatcaaaat tatccgaatc actcagttag aatagtcgag gctttgggaa      2400
     acgaggaagc ccctcagcga taccagcagc tgggggaaac aacagcaatg atgccgtatc      2460
     agtctcaata gtccaaagga aggttctatc tatgaaccca aactactcag attttatagt      2520
     tttgagtagt tcgatttcaa ataaacaatg cacattccta attgacacgc aggcggacat      2580
     aactctctta aaaatttgcg cagtccgccc aagagcgcta ttagatgtag aaaatttgat      2640
     tgacataaca ggaataacgg aagatcccat aacgactttg ggttgtacga atgcgacgtt      2700
     gggtaatgac gattttagag taaattttcc agtacatgta gtaccaaatg aattcaatat      2760
     tccgtcagat gggatcctag gtaaagactt catgaaacat tttagatgca atataaatta      2820
     cggagatatg acgtttagat ttacattaaa cgaacaaatg attacggtac caataaggga      2880
     aggtcccgaa gtaaatacga tagttttacc cgcgagaagt gaggtaatta gacaattcaa      2940
     tttgaaaaaa gaagtgttag aaccccagtg ggtcgattct tgggaaatta gtgcaggagt      3000
     cttcacagct cgcacaataa ttagctcagc tcagccgttg atccgaattc tcaatactac      3060
     ggataaagta caaataatga aaaatgaccg tctaccaatt cagaagttgt cagattataa      3120
     ggtttacaca acgaaaaagg aaatctcttc taaagaaagg acagaaactt tactgaaaat      3180
     tttagaaaac aaagttccta gttacgctaa agaacagctt ttcccgttga tagaagaata      3240
     tgcggacgtt ttcgcattag aaactgacaa gatgaccaca aacaattttt atgagcaaaa      3300
     attaaggtta aaagatgaca caccggttta tataaaaaat taccgtacac cgcacagcca      3360
     gattaatgaa atagaagctc aggtgaatga atttttaaaa aatgacttaa tagaaccaag      3420
     cgcatccgag tataatagcc ctttgatttt agtcccgaaa ccccctttga atggtcgtga      3480
     acgatggaga ctatgtctgg attatcgcca agttaataaa aaattagtgg cagacaagtt      3540
     tccactgcct agaatggatc agatattaga tagtttggga aacgcaaaat gtttttcggt      3600
     cattgatttg ttccagggat tccaccaggt gccattagaa aagaattcca gagacataac      3660
     gtcttttagt actagtactg ggtcatacag atggaaagtt ttgcctttcg ggttaaacgt      3720
     ttcaccgaat tcatttactc gcatgatgac aattgccttt tcaggtatcc ccccagaaca      3780
     ggcatttctc tatattgatg atgtagtcgt gatagggaaa agcgagaagc atcatttaca      3840
     aaatctcaaa gcagtattcc aagtgttgcg agacagaaat ttgaaaatac atcctcataa      3900
     atgcaagttt ttcgagcccg aagtaacctt tttaggacat ttgtgtactc ctgatggcat      3960
     attgccagac cctaggaaac acgagaaagt taaaaattat ccagttccca cagacaaaaa      4020
     cgctgcacac agatttgtat cattcgcaaa ttattatcga cgtttcatcc cacattttgc      4080
     gactatagca aaaccattga acaatttgac taaaaaagac gtgacctttg aatggactga      4140
     acaatgccaa gaaagtttcg atacattaaa ggaaattttg acaaaaccac cagttttagc      4200
     ttacccagac ttttctaaga ctttcatagt cacagtcgac gcctcaataa caggttgtgg      4260
     ggctgtactg agtcagctac atgacgacaa tgatctacca atttattatg catcaaagtc      4320
     atggtctaaa gcagacgcag tgaagtcgac tccaattcaa gaatgtttgg ccattcactt      4380
     tgccttgacc caatttagac cttatgtgta cggagtaccg ttccgagtcc gtacagatca      4440
     taaatcactt atttatctat ttacgcacaa gactttgtct cctaaactta ttcgtattag      4500
     gctggacctc gaaggctacg atttcacaat agaacacatt agtggagcta agaatgtagt      4560
     ggccgacgcc ctatcgcgat taaatattaa agatttacta gatttatatg gaaaaacaaa      4620
     gacagtatat gttatgacaa gatccaaaac aagaaatttg aaaaaggaaa atgaaatgac      4680
     gaccaatgaa aatttaaata aaacacaaga aataagttac gtaccggtaa ttgaacaatt      4740
     aaatgcgcat ataaataaaa agatacctcg aataatgtgt acgcgtacag aaggaagtaa      4800
     agacgaggta atagagctca atatatacga aaattataag aaactgatca gtatgaaagt      4860
     tccggtagaa atacgcaatg atttatcaat tctcgagaaa gtaattaata gtttacaaga      4920
     aattgcgata aagaaaaatt ttaacgaaat tcagtggtcg ctaaacgata ttatgttcaa      4980
     atttgtatca attaacgttt ttaaagaaat ttgcaaaaat aaattgaata aactacgaat      5040
     agtgttaatt aaaagcccga ttttgatcaa tgataagaca aaacaaaatg aactcttaat      5100
     gtactttcat gacaatccga tttttggagg acatgtaggt cacaagaaac tctacgcaaa      5160
     cttaaggagt tattatgcct ggaaaggcat gaggcgagat gttgcctctt ttgtcaaaag      5220
     ttgtacgaag tgcaaactaa cgaaagtcag tgtgaagaac aaagaagccc tcgtattaac      5280
     aaatactccc caggccccct ttgatgtagt agtgatagat accataggcc cattgcctac      5340
     ttcccttaat ggaaatcgct atgcgattac gttaatttgc gatttaagca aatacttggt      5400
     aatcattcct attccggaca aacaggctct tacggtagcc agagctattt tcaataattt      5460
     cgtgttaatc ttcggcctga tgaaacaggt catcaccgat ctgggaacgg aatatgtgaa      5520
     ttcagtgtta gaaagactat gggtcctttt ccatgtgacc cacagcaaat ccactgctta      5580
     tcaccatcag acagtgggta cagcagagag gagtcacaga acgtttaacg agtatgtcag      5640
     aacttacatt tccggtcagc tcgataactg ggaagaatat tcaaaatatt tctcgttctg      5700
     ttataatatc tcccatcacg cgtcttatga tttcaaatac tccccctatg aattgatatt      5760
     ttgtaagagc ccagtgctcc cattcgattg gatggatggt cgaattgacc caatctataa      5820
     tatcgatgac tttagcaggg aagcgaagtg cagactacaa agagcacacg tagacgccag      5880
     aaatcttatt gacaagatga aactaaggaa caaaatgaac tatgaccgtt ctgccaaacc      5940
     gatagaatta gagttaaata ataaagtaaa gttgtttaag gagccatatg ataaacattc      6000
     ggaacgctac gacggtccat tcatagttaa ggatatccaa ggatcaaatg ttacgatcac      6060
     agatggcgac aagtttttga aaactgtgca taaagataga gtccgaaaat atgaatgaat      6120
     cgtcacaaaa ataaaagaat gattttaata tttttatgat tttattgtga agttttattt      6180
     ttaaattaag gttaaagatt aagggttaat ttacaattta atctttattt caatctgcaa      6240
     ttcagtttga aattatgtta tcataaattt ctttaaaaaa aaaaagggac ggtgagagtc      6300
     gcaatctcac aaagtgaaat caaatcccaa aaattaataa attataagca atggttagtt      6360
     ttaagactaa gaaaagttta actttcaaaa ggaaataaat aatgtacgaa ataaataata      6420
     atacgattgg catacaccaa tctagccgaa gagggatgg                             6459
//
ID   Gypsy-12_BrCo-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-177
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1414-1414 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 177 BP; 65 A; 30 C; 23 G; 59 T; 0 other;
     tgtagtgccc cttactatat taagtaagag agaagtaagt tctctctctt tagtataaga        60
     accatgaata tgttacttaa gtgaataaag aatcattcca tataatattg tcaagcagtg       120
     cgtttcactt aatacaacac tcccgttaag actatatata ccaattatat atataca          177
//
ID   Gypsy-12_BTa-I repbase;    DNA;    INV; 1697 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1697
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 676-676 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~100% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           142..1479
FT                 /product="Gypsy-12_BTa-I_1p"
FT                 /translation="MDAQQLKTLLENFQENQTKVLRQIQESADNKQSELVQ
FT                 QFKEMTASMQSSSSKGFPGIPGLSKSDLITQFESFDKKKEHFKNYKKRFEN
FT                 YLALKNVDPSKPGDEALSRNLLLNSIGSDNYEMLVPLLAPVEPRKAPYNDI
FT                 MDKLEHYLSPPINPIVARHRFFNTNQEPNQSINEFTGSLQKAAVDCDFTST
FT                 CPCNKDLAPFMLGIQLVRGVADSRTREHLLQMDTSTTFSKMVEKALALEAS
FT                 KLNAKEIAPQYKPATSSSDIHAFTQQKKPFFKGKKYNNSGKQNSSKTIPST
FT                 KQESNIFNLYNPKTLAPSLFVKLWCFDHPWQSLCHQQTTWPPIPSTSESPQ
FT                 FVFTMNLLGSEEKIEVINTGPAPNLKASLPSPYDHVQSFVILILVALAIYY
FT                 LYRRRQRKIQQKLHRQVQNLISLHVPETEMTDVRPAPRQLQPQDLKMKMPS
FT                 I"
XX
SQ   Sequence 1697 BP; 542 A; 446 C; 290 G; 419 T; 0 other;
     gttggcgacg agtaaaacgg ttatacgcgt gcgaacacac tcgcgatacc ccgtcacaac        60
     aatttttcgc gtgcaaactc gcgtaaaaat taaattttcc aagtgctttc gttcacgcga       120
     ctgtcatctg tgctactcac catggacgcg cagcaactca aaaccctcct tgagaacttt       180
     caggaaaacc agaccaaagt gctcagacaa atccaggaat ctgcagacaa caagcaaagt       240
     gagttagttc agcaatttaa agaaatgaca gccagcatgc agtctagttc atcaaaaggg       300
     ttcccaggaa tcccgggctt gagtaaatct gacctgatta cccaatttga atctttcgac       360
     aagaaaaagg aacacttcaa aaattacaag aaacgcttcg aaaattatct ggcacttaaa       420
     aatgtggatc catctaaacc aggcgatgaa gcactaagca gaaatctttt actgaattcc       480
     atcggctcag ataattacga aatgcttgtt cctttattgg cccctgttga acctagaaaa       540
     gcaccctaca acgatattat ggacaaattg gagcattacc taagcccacc cataaaccct       600
     atcgttgcta gacacagatt cttcaatacg aatcaagaac caaaccaaag catcaatgaa       660
     tttacaggtt cactgcaaaa agcagcggtt gattgcgatt tcacgtccac atgcccatgc       720
     aacaaggacc ttgctccttt catgctcggc atacaactcg tccgcggtgt tgccgactcg       780
     cgcacccgag aacatttact tcaaatggac acttcaacta cattcagtaa aatggttgaa       840
     aaagccctag cgcttgaagc atcaaaattg aatgctaaag aaatcgcacc acaatacaaa       900
     ccagccacgt cctccagcga catacatgct ttcacacagc agaaaaaacc ctttttcaaa       960
     ggtaagaaat acaacaattc aggaaaacaa aattcctcca agacaattcc ttcaacgaag      1020
     caagagagca acatcttcaa tctctacaat cccaaaaccc tggcgccgtc cctattcgtc      1080
     aaactttggt gtttcgacca tccgtggcaa agtctttgcc accaacaaac aacgtggccg      1140
     ccaataccct ctacctcgga atctcctcag ttcgtattca cgatgaatct tctaggatct      1200
     gaagagaaaa tagaggtgat taacaccggg cccgccccga acctcaaggc ttcgttacca      1260
     tcgccctacg atcacgtgca atcctttgtc atcctgatcc tggtcgccct ggcaatctac      1320
     tacctctacc gtcgcaggca acgtaaaata caacagaaac tacaccgaca ggtacagaac      1380
     ttgatatcct tacacgtacc tgaaactgag atgacggatg tacgcccggc tcctaggcag      1440
     ctgcagccgc aagacctcaa aatgaagatg ccatccattt aaatctgaaa tttaaaaaaa      1500
     actcaaaatc cattaaaatt ttaataaata cttacctttc ctttttttgg atacttacct      1560
     tcttttctgg atgaaatact tacctcatat attgtttctc atataatcat tcactgtacg      1620
     taaattcact ggtggtcacc cttcaggcga ccacaatttt tttcttttct tctcgatctt      1680
     cgatctgtgg gggagac                                                     1697
//
ID   Gypsy-12_BTa-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-224
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 686-686 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~100% identical to each other.
XX
SQ   Sequence 224 BP; 33 A; 78 C; 49 G; 64 T; 0 other;
     tgtcatggcc atttctccgt atcatatgtg tcaccatctg tgacacatcc atccggcggc        60
     agtctccttc cgcgcttgta tcggcttccg ggtctgcccg taaggcagcc ccgagtcgcc       120
     tctctcagtc agtcgtcgag tacagcttcg tcagtgcacc actcttgtgt tctttctttc       180
     ccgctcctcg attgctcccc tagccaaagg cttgggtcac caca                        224
//
ID   Gypsy-12_CFl-I repbase;    DNA;    INV; 9152 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-9152
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1030-1030 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           783..1484
FT                 /product="Gypsy-12_CFl-I_1p"
FT                 /translation="MKPNENIFDYIGRVKELRTAIIDGETSPSGYIDEIVK
FT                 HQIEMSVKDNFVNGLPSDLLIRVKLERYSSLDDAIISAIQLSKTLEAENAR
FT                 KRTASSYKPNTSPRADFTKPPQPINQTPSNNPQQXPPRTSATPFIKPLVPG
FT                 IPGPNFPAGKICRYCKAPGHLIDECRKLAYRRSVENNPSQSSTNNNQNNPG
FT                 NAQSVPVTIDVRRNEAQIGRPQQAPITIALPQTSTTVLSPVPNQ"
FT   CDS           join(2804..3559,3523..5556)
FT                 /product="Gypsy-12_CFl-I_2p"
FT                 /translation="MXPSNSHGSKDAPKTAFSTPYGHYQFKRMPFGLKNAP
FT                 ATFQRLMDNVLSGLQGNELFVYMDDIVIYARSLKEHEIKFNKLMQRLRDAS
FT                 LKLQPDKCEFLRHEVAYLGHIIGSDGVKPDPNKIKSIAEFPVPRTAKNIKQ
FT                 FLGLAGYYRRFIPNFSKVAKPLTDLLKKDNTFNWQIHQAEAFNTXKLSLCS
FT                 EPVLQYPDFTKQFILTTDASGYAIGGVLSQGPIGKDLPIAYTSRILNGANN
FT                 VIPQLKKSAWQQRYSTIEKECLAIVYCVNHFRPYLYGRTFIIITDHKPLVW
FT                 LHSIKDLSSRLWKWRTKLAEYEYEIQYKKGSLNNNADALSRNPPANCVVPF
FT                 FAANNSDDSSNNSISSERQRPDVIEDALSPLSEFSPYNSQSENDEPTLEQR
FT                 NIVIQEYSSDNDEDNDXLMIDNSDYSENHIYEEIFDVNEEYQNLDQLVITE
FT                 TRDSLLKQADNHVIFIYSNGTPFDNGAKEYQTANLLPEFQDLTYERANVKT
FT                 FGQRTLISIPIKLDNRTRVEAQSLENCMQSLLDVVTELQLTSFSIRKTDHF
FT                 DDLPWHHIISRIQAYLRELPLCITICKNLVQIPPVEQREALIIENHASAHG
FT                 GHKGITKTYNRLRPHYYWSTMKRDIQNFIQKCRQCQLKKLTRIKTKQPMII
FT                 TDTPGSAFDKVSLDIVGPLPITTSGYQYILTMQDLLTKYSIAVPLRDATSL
FT                 SIADAFAKNFICVYGAPKAILTDQGTNFLSALIRNLIKKFKIQHFKTTAYH
FT                 PQSNESIERSHHVLVEYLKTQICKEKEWDNYINMAMFSYNTSVHEGTKFSP
FT                 FELVFGHIARLPSAHVPIDANLEPTYQDYLTNLFNQVCDLQEEARQNLIKS
FT                 KEKSKRYYDKRLNPQNFREGSHVFLLKEPAKGKFSDQYTGPHKIIEVLSHG
FT                 NVKIMVKNKPRIVHVNKLKISHIEPG"
FT   CDS           join(7106..8479,8439..8984)
FT                 /product="Gypsy-12_CFl-I_3p"
FT                 /translation="MLAYLAIVIITRAXDALIGFDCGGQHLNITSVSLLDV
FT                 GECNLDYRKPNTSDTYVQLLQLSDYNHAEVIQCKVEISRTIYHCGMHSHVS
FT                 VVQNGRADYIHETGYTQCLRMFQDGTLSLGVGNLVYGLKANQTTHRSLTLG
FT                 GRIGHDGSCKGTQYSDPYGTWDDVVVQASVKISMKSSHVPVQLNSGKIILK
FT                 SGTVCTFSESXCIDSDDGYTXWKSVPTSSCNFHQYDVLYEGPATVIKDDMT
FT                 DPSSPVVYSLTTQDITFALTKTREQPLCGYTLLGTEHPKLFILETKEESTF
FT                 FHRGIIPVDNLDIFAYMNSKFVYVEKHVRHQMTSLYHNVMQQKCELERQVI
FT                 TNALSFATLQPDEFAYQLMKGPGYMAVTTGEAIQIIKCIPVDVIVRKTKEC
FT                 YAELPVTVRNSSFFLTPKSRIITKFGNQRECSYELPTMYRMRTPGCSSHLM
FT                 RKSGXQLRSNCNPCASQAXSSAATATHDNSILEILNARSAISGIYSEKDIE
FT                 KLRDHIMFPAEKPALLNTVARGLTGHSINGDAISMYSLLDEASLNKIVXNT
FT                 ASRVWKGFVTFGSATAGIFGILLIVRIIKLVVDTALSTDTLYIQHTDAACI
FT                 YSEPSGALSHICYCTLHVDPSTKRIASKPAKHRLRLQPHLKN"
XX
SQ   Sequence 9152 BP; 3142 A; 1973 C; 1517 G; 2488 T; 32 other;
     tttggtggca gcggtgggat agccaaagga ctgacgaaga ttttcacgga taaataaagg        60
     cacgcgaata catatawctc taaataccta aagttcatca tataatcatg cctaatacac       120
     gatcaacctt ctgagtcaag cgatascgta agtcgcgcgg aattagaaat acttaataaa       180
     agagtagctg agaaggagaa aatgttaaaa gaacaagctc aagccttaca agttaaacaa       240
     caggaattag ctatattaca acagaatatc gaaagtagaa atgctaatgc tgacaatgga       300
     cagatagata cgatactaat cgcactgcag gaacaaatct ctgctttaag ttccttacct       360
     ttccaaatag aaaatttaaa tcaacgcgtt gcccaacttt ccaattcaaa cgcagattta       420
     cctcctacca acagacgact tacgaccata tccccgtaag aaatccccct tatagatcca       480
     atccgacgga cacttctccg attcgtctta aagatgtagt tgattcaatt ccgagatatg       540
     acgggcacaa catttcggtc ttccatttca ctaaaacatg tgaacgagct ttagaattaa       600
     ttccttgtta tcaggaatat catttagtac aattaataat taataaacta caaggacatg       660
     cttatgccgc tatcgagggc acagaatgcg aaactattat cgaacttacc aaacgattga       720
     aaaatatttt tggccccaat aaatctaccg atcaatatcg cggtgaatta gcaaacattt       780
     atatgaaacc gaatgaaaat atttttgatt acattggaag agtaaaagaa ttacgcactg       840
     ctattatcga cggagaaact agccctagtg gatatattga tgaaattgta aaacatcaaa       900
     ttgaaatgag tgttaaagat aattttgtaa acggtcttcc ttccgatctt ctaatccgcg       960
     ttaaattaga aagatattcc tcgttagacg acgctattat atccgctata caactttcta      1020
     aaactttgga agcagaaaat gcgcgcaaac gaactgcatc atcttataag cctaatacct      1080
     cgcctcgtgc ggatttcaca aagccccctc aacctattaa ccaaacaccc agtaataatc      1140
     ctcaacaakt acctccccgg actagcgcaa ctccctttat aaaacccctc gttcctggaa      1200
     tacccggtcc taattttcct gctgggaaaa tttgccgata ttgcaaagct cctggacatc      1260
     taatcgatga atgccggaaa ctcgcttata ggcgatcggt tgaaaataat ccttcgcaat      1320
     cctctactaa taataatcaa aataatccgg gaaacgcaca gagcgttccg gtaaccatcg      1380
     acgtccgccg gaacgaagct caaatcggac gtcctcaaca agcccccata accattgcgc      1440
     tacctcaaac ctcgacaact gtcctatctc ctgtaccgaa tcaataaatg aaaacgcaaa      1500
     atataatagt ctaccttccg tcattctctc ttctactgac ttaaagaata aatgctcttt      1560
     catgatcgac tctggctccg gtgttaacct aataaaacaa cacctcatta aagcaaacgt      1620
     tattataaat aacgaaaaaa cattatctct tcaaggtata tcctctaaac ctgtattgta      1680
     tccctactct aggttttgtt actattcttt tacttaaccg acccactaat ttttacgtga      1740
     ttccagacac ggtcagtttt ccccaggacg gtatcttagg gaatgtattt ttaaaagaac      1800
     gaatggctaa agtagattat aaaaacaaat tgctgcatta tgacgactcg agcattccat      1860
     ttttagaaac aactcttatc catgtcaaga aacggtctgt tacgccattt tttgtccatg      1920
     ttgctaattc cgaaaaacaa tacgggtata taccgcgctt tgtaccgttc gaaaaggttt      1980
     atttcggaga tgctattgtt aagaacacta atggaaaagc ttatctacct atttttaata      2040
     cttctgaatc agaatacgat atagaagttc ccgtggttga cttacaagac ttccattttc      2100
     tcaacgaatt cacatcccca tgtaatgtcg tcaaatcccg agggaatgag actagtgagg      2160
     ggactggwaa ttctcatatg acmtcttgta aggaaaccga ctttagagat atcaccgcga      2220
     ccttagggct cccagtgatc agtaatcata ctataaacaw tktcgaaaac cctctgtatt      2280
     ttatcgagac tcaaaataac aatacttctg aggaagttta ctgcgaccgc gcgtccgctt      2340
     atgcaacttt tgcggttaga acatttaaat tccgaggaat ctgataatgt caaatcgtta      2400
     attcttaatc astctgatag atttcatctc cctcatgaca aactcgaagc tactaacgct      2460
     actcaacatt tcatacctac tacggacgaa atccctatcc atacgaaaca ataccgattt      2520
     cccccgatac ataaggacga aatwaacaaa caagttaacg aactcttgtc tcatgattta      2580
     atcgaatatt ckacctcwcc ttataattcc cccgtatgga tagtacccaa gaaaccggat      2640
     tcttacggta ataagagatg gcgaatggtc atmgattacc gtcgccttaa cgaaaaaacg      2700
     ataggagacg cctatcctct ccctaaccga tatccttgat caatcagggt ctgccaaata      2760
     tttttctgtc ctcgatttag cttccggatt ccatcaaatt cccatgkctc catcaaattc      2820
     ccatggttcc aaggatgctc ccaaaactgc tttttcaact ccttatgggc attaccaatt      2880
     taaaagaatg cccttcggtt taaaaaacgc ccctgcaaca ttccaaaggt taatggataa      2940
     tgttctctcc ggattacagg gtaatgaatt atttgtatac atggacgata ttgtcatata      3000
     tgcaagatca ttaaaagagc atgaaattaa atttaacaaa ttaatgcaaa gattacgaga      3060
     tgcaagctta aaattacaac cggataaatg tgaattctta cgacatgaag tagcttatct      3120
     cggacacata atcggatccg acggggttaa acctgatcca aataaaataa aatctatagc      3180
     tgaatttccc gtgccaagaa ccgcgaaaaa tatcaagcaa ttcctgggtt tggccggata      3240
     ttacagacga tttattccaa acttttctaa agtcgccaaa ccactaaccg atttactaaa      3300
     gaaagataat acttttaatt ggcagataca tcaagcagaa gcgtttaata ckktaaaact      3360
     ctccttatgc tccgaacccg tactccaata ccccgatttt actaaacaat ttatcctaac      3420
     taccgacgca tcaggatatg ctatcggagg agtgctaagc caaggaccaa ttgggaaaga      3480
     cttaccaata gcctatacct ctcgtatttt aaacggtgct aacaacgtta ttccacaatt      3540
     gaaaaagagt gcttggcaat agtttactgc gttaaccatt tccggcctta tttatacggg      3600
     agaacgttca tcatcataac cgatcacaaa ccattagttt ggcttcattc aattaaggat      3660
     ctttcctcta gattgtggaa atggagaaca aaactagctg aatatgaata tgagatacag      3720
     tataaaaagg gaagtttaaa taataatgcc gatgccttat ctagaaatcc tcctgccaat      3780
     tgtgttgtac cttttttcgc tgctaataac tccgatgatt cctctaacaa ctcgatttct      3840
     tccgaacgtc aaagacccga cgtgattgaa gatgcgttat ccccactatc cgaattttct      3900
     ccgtacaatt cacaatctga aaatgacgaa cctacgttag aacaacgtaa catagtaata      3960
     caagaatact ctagtgataa tgatgaggat aatgackagc tgatgatcga caattcagac      4020
     tatagcgaaa atcacatata cgaagaaatt tttgacgtta acgaagaata tcaaaatctc      4080
     gatcaactcg ttattactga aacccgggac agtttactaa aacaagcaga caaccacgta      4140
     atatttattt attcaaatgg aacccctttc gataacggtg ccaaagaata tcaaaccgca      4200
     aatctactac cagaatttca agatcttact tatgagagag ctaatgtaaa aaccttcggt      4260
     caaaggacct taatatcaat tcccattaag ctcgataatc gaacgcgagt agaagctcaa      4320
     tcattagaaa actgcatgca atcactttta gacgtagtga cagaattaca attaacctca      4380
     ttcagtatta ggaaaaccga tcattttgac gacttaccgt ggcaccatat aataagtcga      4440
     attcaggcat atttaagaga attaccgctt tgcattacta tttgtaaaaa tttggtacaa      4500
     attcctcctg ttgaacaacg agaagcatta ataatagaaa atcatgcgtc agcacacggt      4560
     ggacataaag gcattactaa aacgtataat cgattaagac ctcattatta ttggagcacc      4620
     atgaaaaggg atatacaaaa tttcattcaa aaatgtcgtc aatgtcaatt aaagaaatta      4680
     acgcgaataa aaacgaaaca acccatgata attacagaca ctcccggctc agcatttgat      4740
     aaagtatctt tagatatcgt aggccccctt cctatcacaa cttccggata tcaatatatt      4800
     ctaaccatgc aagatttatt aacaaaatat tcaatagccg ttccgttaag agacgcgacc      4860
     tccctatcca tagctgatgc tttcgcaaag aactttattt gtgtatatgg agctcctaaa      4920
     gctattctta cagatcaagg gactaacttt ttatccgccc tgatacgtaa tttaataaaa      4980
     aaattcaaaa ttcaacattt taagaccact gcttatcacc cacaatctaa cgagtcgatc      5040
     gaaagatcac atcatgtatt agtagaatat ctaaaaactc aaatttgtaa agaaaaggaa      5100
     tgggataatt atattaatat ggcaatgttt tcatacaata ccagtgtcca tgaaggaact      5160
     aaattctcac cttttgaatt agtcttcggt catatagcac gattaccttc tgctcatgta      5220
     ccaatcgatg caaatcttga acccacttac caagattatt tgacaaattt atttaatcaa      5280
     gtttgtgacc tgcaagaaga agcacgtcaa aatcttataa aatctaaaga gaaaagcaaa      5340
     cgttattacg ataaaaggtt gaaccctcaa aattttcgcg aaggttcgca cgtattctta      5400
     ctaaaggaac ccgcgaaggg gaaattctcc gaccagtata ccggmcccca taagattata      5460
     gaagttttat ctcacggcaa cgtaaaaatt atggttaaga acaaaccgcg aattgtgcat      5520
     gtcaataaat taaaaatttc ccacattgaa cccggatgat aaactaatac accatctttg      5580
     gtttcagata cattggcttc gccaaccaaa atgttacctt ttcttttatc ttgtatcatc      5640
     accctccttt ctctaacata ttaaatccac gattatccat ttcattataa ccgacttcac      5700
     tgcacttata ctagatgaat tttwcctctc tcctaaaatc caactttccc tcactaccgt      5760
     ttaaatccaa agaaatatac aaacatgcaa tttatcatca atctcaaaat cgtaacggta      5820
     tcgtactctt attatataac accaaatcac gcaaatcgta tacctctttg tttataatga      5880
     ggaaactcaa tccgtttgtt aaattataga atttgaattt cctcagtaaa gcaaawtttg      5940
     tgaaattgag aaaagaaata agaaagaatg tgagwatggt agacgaaaaa aaacacaaac      6000
     aaaagaagca cttgagaatg aatgagmgcg tgtcgaatta cgggtgtcaa gccgaaatgt      6060
     aaacgatgat agagacaaaa cctaacattc ggggatagac acaggtcagt acgttaccgg      6120
     gaagctcaga gaaaagacgc aaggaaaacg ccctactatc aaaataaagt aaggaaaata      6180
     aatcgataaa taaaattaag ttaatagtaa ttaaatagta aaaagaatta cctatccttt      6240
     ttagaatgtg tatcccagta gcgtacaaac ctaaaatcca ccaattactg cgagattttc      6300
     ctggattata catggcaaaa tgtgtgcaaa ggatcggaga aagagtacca gccgatggca      6360
     gcatatattg ccatgattgt cccccaaggg gctattctct tgaacctttg ttgagggccc      6420
     ttcgcgaacc cttccacagc cacgaattta ttgaaggacg tatccaagag cttcggtgca      6480
     aggactgtcg aagacctatt gagacaaaaa cccaatcaat cctttcgtgc gaacagtgct      6540
     tcgatgctta cactacggca catcgcatat taagtgaaca gcacgattta aataatttaa      6600
     gcttacttcg ttatgatgta gacgaagatc acgtaataga attaataata gcacccgaac      6660
     ttcctccccc tgaaaatatg gatgaaattc gggagaatct tttagaattc gataatgtat      6720
     aactactata actattagca taactattaa taagtatata agtatatttt tattatcaac      6780
     atcatgaata catatatata tatatattag tataattgtg aaaaaawwtw wataaawaaa      6840
     aaatataaaa aaaatatata tatataccta cacatataac cataaagcat taattatttt      6900
     cattattatc ttacctctac tttaattgct taatgcctca ttaactaatt caataagaat      6960
     actaataact aacaagattc ctagtaacta gtaagattga cataggaaaa aataaaataa      7020
     aaagagaaaa agaaatatta attaaacaaa atatatgtta tagctgtaac aaaaatatat      7080
     atatatatat tgtataatta cagaaatgtt agcttacctt gcgatagtaa tcattacgag      7140
     ggccascgac gctctcatcg gattcgattg cggcggacaa catctaaaca ttacctcggt      7200
     atccttgtta gatgttggcg aatgtaacct cgattaccgg aaacctaaca caagcgatac      7260
     atatgttcaa ctcttgcaac tttctgacta taatcatgcg gaagttattc agtgtaaggt      7320
     tgaaatatct cgaacaattt atcactgcgg aatgcactca catgtctccg tagtccagaa      7380
     cggaagagcg gactatatcc acgaaactgg atacacacag tgtttaagga tgttccaaga      7440
     tggaacgctc tccctaggag tcggaaacct cgtgtatgga ttgaaggcta accagaccac      7500
     tcatcgcagt ctcaccctgg gaggacggat aggccacgat ggaagctgta agggcactca      7560
     gtattctgac ccctacggaa cctgggacga cgtcgtggtc caagcttcag tcaaaatatc      7620
     catgaaatcc tcacacgtcc ctgtgcaatt aaattccgga aaaataatat taaaatccgg      7680
     aactgtatgt acgttcagcg aaagcktctg tattgactcg gatgatggat atactwactg      7740
     gaaatctgtg cctacatcat cttgcaattt ccatcaatac gatgtccttt acgaaggccc      7800
     agcaacggta atcaaggatg atatgaccga cccttcatcc ccagtcgtct acagtttaac      7860
     gacgcaagat attacctttg ccctcaccaa aaccagagaa cagcctttat gcggatacac      7920
     cttactgggc acagaacatc caaaattatt cattctcgaa accaaggagg aaagtacgtt      7980
     cttccatcga ggcatcatcc cggtggacaa tttagacatc ttcgcttaca tgaactcaaa      8040
     atttgtatac gtagaaaaac atgttcgcca tcagatgacc tccttgtacc acaacgttat      8100
     gcaacagaaa tgcgaattag aaagacaggt tataactaat gccttgtcat ttgccactct      8160
     tcaaccagat gaattcgcat atcaattaat gaagggacca ggctacatgg cagtaacaac      8220
     tggagaagct atacaaatta taaaatgcat acctgtggac gttatagtga gaaaaactaa      8280
     agaatgttat gctgagttac ctgtaactgt acgtaactcc tcgttcttcc tgactcccaa      8340
     atctcgaata atcactaaat ttgggaatca acgtgaatgt agttatgaac tacctactat      8400
     gtatcgtatg aggacacctg ggtgcagttc acacctgatg cgcaagtcag gcaakcagct      8460
     ccgcagcaac tgcaacccat gacaactcta tcctggaaat acttaacgcc aggtccgcta      8520
     tcagtggaat atattctgaa aaggatatag agaagttgag agaccacatc atgtttcccg      8580
     cagagaaacc tgccctcctc aatactgttg ccagaggact taccggccat tccatcaacg      8640
     gagatgctat ctcgatgtac agcctactgg atgaagcctc gctcaataaa atagttgaka      8700
     ataccgcttc ccgagtatgg aaagggtttg tcacctttgg ttccgcaacc gctggaatat      8760
     tcggcatcct gttaatcgtc cgcattatta aacttgtggt cgatacagca ctatccacgg      8820
     atacgcttta catacagcat acggatgcag catgcattta ctcggagcca tctggagctc      8880
     tgtcacacat ctgctactgc accttgcacg tggacccgtc aacaaaaagg atagcatcca      8940
     aaccagcgaa acaccgtctc cgactccaac cgcacctgaa aaattaacaa caaaggagac      9000
     tccaggaata accaaatcca ccgatgttat tgtcgagcca gtgwcctcaa cctctgaaat      9060
     taattcatac caggccttaa gggatcgatt aagaacccta gaacaaatcc ctacgagcac      9120
     atcggaattt gttcttaaat aaggggggaa gg                                    9152
//
ID   Gypsy-12_CFl-LTR repbase;    DNA;    INV; 2841 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2841
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1031-1031 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2841 BP; 922 A; 577 C; 421 G; 918 T; 3 other;
     tgacgtcccg ccatcttaaa aattactaga tttagttatt attcgcttac tcatcttgct        60
     tctttagtat aaccacggag taagaacgaa tattcgattt tattamttat aatccgattt       120
     tattcattat tattaatttt aattttaata tacgcgtata tgaattctaa cacttgaaat       180
     attgattaca acacttgctt accgttccta ttatacacgg ttatttaacc tgctaattaa       240
     ctatgtactc cttaatcaat atataataag gactttttat atatgctaaa tttaaaattt       300
     agatttaaat aaatgcgacc gaaataaata atttaagtaa ataaggtatt tcaagggaat       360
     tattggatta attttaaatg aataactacc aaattatttc aactctttga aatgctttat       420
     ttaaaattca ttatgaattc acgaccagtg taaataactt cctttatatg ctgtaattta       480
     aattcgatta ttctacctaa attgagctat atttctaaat cttttctaaa atataaggga       540
     agttatacat atatataatg attctataat cctaataccg atagcgtgat agatattaat       600
     attaaaatta agagcgcata gcttttgcgt gaggtgatca aagaggaagt cataaatatg       660
     tcgagcattg atttttcaga gatgtcgacc gacacctccg atgaaattca cgcattactc       720
     tttgatcacc gccgcgcttc tatgaaaaag atatctatgt ctaaacaatt gataagaaat       780
     tcggtggtgc ttccgagtac gacgtggtcc gatgaagaga tcaccttact cgaggattcc       840
     tatagcaaaa gatcatgcaa ggaacaaagg aattaccagt atataaaccc cggatttcgg       900
     gcgcgagcga acagtagtaa taattagtca gtagaaaaga cttgctgtta gtcgcttttg       960
     tcagtgtcac ttcgtcgcta ttacttttat attcttgcta ttcgttataa ctaaactatt      1020
     acttttgtat caatttgcta tatcattcgg tcaaattcaa ataaaagaat tataattgtg      1080
     catatttacc gtgtcaattt ttggagagac ccagaccttg cgtatacgaa ggcgaccaag      1140
     atcagcagaa atcmacctct gagtggtaag taccagattc ctttacattc cttattttat      1200
     tctctcgttt tcaaactcaa ttgttcgttc accttccttg cattcaccac acttcctgaa      1260
     ataagatatc gagaattaaa taaataacaa tactgtcaag cactggcatg ctgctgatag      1320
     tattcctttc ctaatcagca taaagattgc aataacttat cattttattc tggcaagcgt      1380
     caagataatt attaattaaa atcattatac agctctcatc cgttaagcgt cgggtgcctc      1440
     cttcccttag gatctctcca ggcatcctct gtcatgccgg agacgtctgc actctcctat      1500
     ttttactcca aaaagattca ttactagctc tagccgaccc cagatttcca tcgtctccgg      1560
     gcatccactg tcatgccgga ggcatccaac ttcctaaatt aattcgttaa ccggcgcttc      1620
     acggaatata ttaaacgaaa tttgaaatta tataatctac tgctatcaac tcaaacgtct      1680
     ttccttatac agggatacag catcttctcg gtgccgcccg aaaaccttct tgttctttct      1740
     ccctttttcc gtcgcttccg ggcatcctct gtcatgccgg atgcatccta atttccttac      1800
     ccttatgcaa actccgttat cataacgtta ctccgcctta aaagtcccgt cgtctccggg      1860
     catcctctgt catgccggag acatccatat ccttataatt tattgacgtt tcagttgaac      1920
     taaaatcaca agaattaatt gcacaattta ataacttgcg ctgacgctaa cccagataat      1980
     aataataaca aaaataaata cacactaatt tcctcaatca attccttaaa tggtgaattc      2040
     acaattgaaa tctaaaaaga aaaagcatag agcaggtaaa ataacccgtg aatatcgcga      2100
     tatctctcga ttccgtcgaa ataaaagatt aaaagcaaac tcaaacccta attacgtcaa      2160
     atcagacaga agggttttcc ttccggaaag ttttatatcc gctctaaaga tcaaagctaa      2220
     atttctcttt tatttaccgg aaaattttac ttcgcagaaa tttcgtcaag caattactac      2280
     aaacgtagaa tttgactctt tttataacta ttacttagag attatcaaat ataaagatac      2340
     tattgaaagc ccttcctcag aaccagcgga tctaataact caattaaaat ctcagttacc      2400
     ggaaaaccag tgtgagatag agaattattt acagactctc caatgaagcc ttcgtgcgac      2460
     gataaagatt ttttcaccct aacagccaat gagcaagctc aaatccttga aatattatta      2520
     gaattcatag atcaatatat cgcaggtgat attgatatcg atcaactaat ggaattaata      2580
     gagaatttcg aaattccatt ctaatagata cttattacac acgtatttat tcaaataatc      2640
     ccatctcatt taatcaattt atcctatcat agagtttcgc ggcttcctca tttttccgtw      2700
     atcgataagt cagatcctcg ctctcggcat ccccaaggta tagccggtgt aagcaggttg      2760
     ccttgaaaat aaagagagcg cactttactc tagaaccgag gtatctaggg gaaaagtaag      2820
     tcactgagac gtgacatcgt a                                                2841
//
ID   Gypsy-12_CoFl-I repbase;    DNA;    INV; 8189 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-8189
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2293-2293 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1003..4089
FT                 /product="Gypsy-12_CoFl-I_1p"
FT                 /note="gag."
FT                 /translation="MNRPRDMGPLEPQLHAEIMRDVVHTREQRAFRREIFT
FT                 LPLEVVLPQLDERGLSLEGDEFVLRDRLLRHRMLELEPENELIPRYDCDFA
FT                 LAGSEDGDESIAGAEASDHSRVLGPSEELRESSAMNNPSQWGAEVTVATSG
FT                 GELGHPAPREGDHRWLGTPGVDLSIDRDEQNLSARNPSFTRVATTQTSEFV
FT                 PPMCPVTVPATVTTTTVYTSPVMAASVTPQRRIFALQGQANMRFVGTLPPS
FT                 GTGKIDLGVFDVFDRIRKMQAVGVGALRRAAGETSLGATGGRRDTAANLGG
FT                 SPLVDLKAPALSFPPLPRTRASELDAPHDRKQGTLAPRLASGEESRQFYQT
FT                 ATEWVNKSPGPGDATMQEDVPSDQRLEETYAQATAELRGLNPRREESGSET
FT                 ETFRLPRKPLPSRKPLTQPKVLGRKVEEEVERAYEGGEFSDHSRRPAPSDS
FT                 EGWTLVSPRRLRPRGFPAESTGTRVPGPRGQRFTPDXRKAGPSPTTFNPVD
FT                 NRRRRPLNPHPQGGGFQLPSARNTRNSAQDQRRRQTGPTLPEEMRDVRGEE
FT                 WHPRAGERALSDQSSSDSESEAEFTGRRVNDRNRRRANRSERGQAERSAEP
FT                 RENRASKALQNWKLHFSGEDKGEDAEDFLERLEDCRVSVGASESEFYRAVP
FT                 VILFKRASRWFRAVRSEVVTWRQFKRAFKRQFVGEYDREDLLDDLRRRTQG
FT                 KGEKVNDYVTNIRYIVSRFVRPPSQKTVTETVYRNLLPEYRKAMSGQLIMS
FT                 LDDIQEYGRLWERQRELDGKYAPPPPPEKMHVPGAAFISSAPRAKVAGIAD
FT                 ENPEQVAAAAVETPGTNKGAKKRGPGKPPGNLEPVTSGPPALQWPVPNPPS
FT                 PSPAIGEPGPYPSYAAAVQVTQPNVARNSGAPAWTGGQWVWPSVPRPNVGG
FT                 NLGPRPTIPPPPAPAAQSNPFRMLGENQASDRQRPGPFMGACFTCSGVGHR
FT                 SAQCPESLCYACQQKGHMSRGCPNRPPRVEGAVGGTMPRNVYCQVCGLRGV
FT                 TFKSCSVCEKLRESLGNWQLGGQ"
FT   CDS           4059..7898
FT                 /product="Gypsy-12_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ESGKLATGGPVKSLLPGPPRAGCETTETAREACEAMK
FT                 RGEANAKNRSSDEKRSDLAGDSGSIKLFGKSKRKQIVSSEISVTPDSESEE
FT                 VGLQDVRGLFEGDDEDAGVNRAIAPSMRVMLGGDVLSELKSTPVPEGNRAR
FT                 RNIWLRPRGGEGVSLGGEKEVEASASEREDDRLFEWPKPVSWDALNSEPLK
FT                 VFKTVDEMLQESVEKRAAKPRNEGPLGLSLDDVFPSATLGLKLLSDEERAK
FT                 YAGGLHVGLHEEIAGVSDDNRNYICVSLGGQSYKALLDPGATSSLIGPKVA
FT                 DKFEKRLLPSNSAMRNVNGGVTRVLGVLKAQIDLGTREGVLYLKAVPNIDQ
FT                 DLLLGMDFCQNFEIEANFGKRLWRASEGPWASFVGGSDEPERVIYAECAGI
FT                 VEVGDDQRGRVNKLIEQVLSSATEAPGITKLTEHVIRVTDRTPIRHRLRRM
FT                 SPRMQEIATEEVERMYNEGIIEKSSSDYSSAPVMIKKPDGTYRFCIDFRDL
FT                 NKVTTRDAYPLPSMDSILDRLRSARYLSKIDLKQAYFQIPMEASSRKYTAF
FT                 SMPGSGLWHFRRMPFGLTNAPMTFQRLIDALFGPDLQPNVFGYLDDIIVAT
FT                 DDFDEHLRYLEIVMRRVTGAGLEIKFEKCEFCLSQLTYLGFILDKDGLRPD
FT                 PEKIAPVLKYPAPRDVKQLRRFLGMVGWYSRFIERDSEIKIPLVKLLRKKQ
FT                 MWEWEAEQQEAFDKLKGALTDAPVLARPDFAKPFTVQTDASNYAIGAVLSQ
FT                 EHEDGEHPIVYVSRVLTPAEKNYSVTEKECLAVIWALKKLRPYVEGYRFTV
FT                 ITDHSALKWIKDLREPAGRLARWALEMSQWDFEIVHRKGAMNHVPDALSRL
FT                 SGEEQEIAAFDEISDEWYVKMTKEVVEYPLKYKDWRVEDGRLYRHRVDLLL
FT                 DPITHREEKWRLVVPENHKERVMTDAHCSPSSGHMGIEKTYDRVAREYYWR
FT                 GMYYDVKRFVKACELCQQFKVPQTAPQGLMGKRIVERPWAVVAADLMEFPP
FT                 SKSGHKYLIVFQDLFTRWIEVKPFRKADGKSVVRALEELILFRWETPEYFL
FT                 TDNGREFSNKLIAETLKEYGVQHVFTPPYHAQADPVERTNRTLKQMIAIFV
FT                 GADHRNWDLHVHEFRHAVNTATQATLKVSPAFLNYGRNPKPVKSLRREVEP
FT                 KEKIERISPEAWGDRVKRLDALRDLVAKHIEDARSKQERHYNRGRRDVRFS
FT                 VGMQVMKRTHHQSDAAKKFSAKLAPKFEGPYEIVAVKSPVVFVLRDGNKER
FT                 VAHVSDIKRYVPPRGKPST"
XX
SQ   Sequence 8189 BP; 1937 A; 1885 C; 2575 G; 1790 T; 2 other;
     aagtggcgct cgacgtgggg ccttatttag ccggggaacg agaatcggtg ttataagtgc        60
     gcgaattacg gtgtctctct gtttacaaat tgttcgaatc gccgtgagcc gagagtgaat       120
     gtgtcgtggg taggatagtc gttttcgtgt gttattagtg tcgttacgta ttttatttta       180
     tattgcaagt ggcgtcgcgt ccgtagtgca tgcggggata ttttctgtgt ttacaccacg       240
     ttgccgcgtt gatcggaatt tttttttgga aactgccaaa atttaccggt ttttaggagt       300
     gtttgggtta ggcagcgccg agtacgagcg tgagtcgggg gagaggggaa agagacgtat       360
     agtcgaagag tgagagagag agagacgcgg ctaagcttgg ggaaattaag cgtgtgcgtg       420
     aattggacgg gcttttcgat agcgccaaat tttcaggtga acgagtgagc ggctcttctt       480
     gcgcgttttg tttttcttgc gcgtgcgact ttcgctttcc aggtactagt agcggccatc       540
     ttggaggccg tttgcgtttt ctttgagtgc gtgatttgtt tacaggagga gaacagggcc       600
     taacgtgcct tgtcttatac atatatattt ttattgtttt ttttatttac catacaaata       660
     atattttatt tctgtctatt ttcttctcct ctcttctttc tgagcgttgc ctttctctat       720
     attctttcgt gttttcgtcc gagtgttaag aagtgcgcgc cgcgttgtga tagtgccgtt       780
     gctgtgatat atatatttcg ggacaagtgc ctggtgtcgt gtagatttaa attcggggaa       840
     gggaattgcg cggatcttta tcgtttttgt cgtgcgtgta gggaagttag gaatatagat       900
     atagaccgtg tgggggaaat tattattttt tttgttttgt ttgttgcgta gtgacaagtc       960
     gggcgaagtt agcgtcgagc tcacgcgtca taagttgcgg ggatgaatcg tccgcgtgat      1020
     atggggccgc tggaaccgca gttacatgcc gagattatgc gcgacgtggt gcacacccgc      1080
     gagcagagag cttttcggcg ggaaatattt acgctcccac tagaagtggt gttaccccag      1140
     ctggacgagc ggggactgag tttagagggg gacgagtttg tgctgcgaga cagattgttg      1200
     cgacatcgaa tgctcgagct cgaaccggaa aacgagctca ttccgcggta tgattgtgat      1260
     ttcgcgctag ccggatctga agatggcgac gagtcaatcg cgggggccga agctagtgat      1320
     cattcgcggg tgctggggcc gagcgaggag ttgcgagaga gtagcgccat gaacaaccct      1380
     agtcaatggg gggcagaggt aaccgtagcg actagtgggg gcgaattggg ccatcccgcc      1440
     ccccgagaag gtgaccaccg gtggctggga accccgggag tagatttatc gatagatcgt      1500
     gacgagcaaa atcttagcgc ccggaacccg agttttacac gcgtcgcgac gacgcagacg      1560
     tcggagttcg ttccgccgat gtgccccgtg acagtacctg ctaccgtgac gaccacgacg      1620
     gtgtacacgt ccccggtcat ggcggcctcc gtcacgcctc agcgacggat ttttgcgctt      1680
     cagggtcaag cgaacatgcg cttcgtgggg acgttgcctc ccagtggtac cgggaaaatc      1740
     gatttgggag ttttcgatgt gttcgatcga atcaggaaga tgcaggccgt cggagtaggg      1800
     gccctccgca gagccgcngg ggaaactagc ctaggagcca cgggtggacg aagagatacc      1860
     gccgccaacc tgggggggtc tccactagtg gacttgaagg cgccggcgtt atcgtttcct      1920
     ccgttgcctc ggacccgcgc ctcggaactg gatgccccgc acgaccgtaa gcaaggcacg      1980
     cttgcgccgc gtctagcgtc cggcgaggag agtcggcagt tctatcaaac cgcgaccgaa      2040
     tgggttaaca agtctccggg tccgggagac gccacgatgc aggaagatgt gccaagtgac      2100
     cagcgcctcg aggaaacgta tgcgcaagcg acggccgagt tacgaggact caatccgcgt      2160
     cgggaagaat cgggtagcga gactgagacc ttccggctgc cacggaagcc gctgccatcg      2220
     agaaagcctc tgacgcagcc gaaagtactt gggaggaagg tcgaggagga ggtggagcgc      2280
     gcgtacgaag ggggcgagtt ctctgaccac tcgcgacgac ccgcgccgtc agatagcgaa      2340
     ggctggaccc ttgtctctcc tcgccgtttg aggccgagag ggtttccagc ggagtcaacg      2400
     ggaacccgag tcccaggccc tcggggccaa cgattcacgc cagacktacg caaagccggc      2460
     ccatctccga ccacctttaa cccagtggat aaccggcgta ggagaccgtt aaaccctcac      2520
     ccacaagggg gaggtttcca actgccgagt gctaggaaca cgcgtaatag cgcccaagat      2580
     cagcgtaggc gacagacggg gccgacccta ccggaggaga tgcgggatgt acggggcgaa      2640
     gaatggcacc ctagagcggg cgagcgagca ttgagcgacc agtcaagctc ggatagcgag      2700
     agcgaggcag agtttaccgg gcggcgggtc aacgaccgta atcggcgacg cgcgaataga      2760
     tcggaacgtg gtcaagccga gagatcggct gaaccacgcg agaaccgggc ctcgaaggct      2820
     ctccagaatt ggaaactcca tttttcggga gaggataagg gggaagatgc ggaggatttt      2880
     ctcgagcgct tggaggactg tcgcgtaagt gtgggtgcta gcgaaagtga gttttaccgc      2940
     gccgtgccag tgattttgtt caaacgggcg agccgttggt ttagagccgt gagaagcgag      3000
     gttgtgacat ggcgacaatt taagcgagcg tttaagcgac aatttgtggg cgagtatgat      3060
     cgtgaggatt tgctagacga tctgcggcgc cggactcagg ggaaagggga aaaggtgaac      3120
     gattacgtga cgaatatccg ctatatcgtg tcgcgttttg tcaggccgcc gtcccagaag      3180
     acggttaccg agaccgtgta ccggaactta ctcccggagt atcgtaaggc gatgagtggg      3240
     cagctcataa tgtcgcttga cgacatccaa gagtacgggc gcttgtggga aagacagaga      3300
     gagctggacg ggaaatacgc gccacctcca ccgccggaga agatgcacgt tcccggagcc      3360
     gctttcatta gctccgcgcc aagggccaag gtagcgggga tcgccgacga gaaccccgag      3420
     caggtcgccg ccgctgcggt cgagactccg ggcactaaca agggagctaa gaaacgggga      3480
     ccggggaagc cgcctggaaa tttggagcct gtcacttccg ggcctcccgc gctacagtgg      3540
     ccggtgccaa accctccgtc cccaagcccg gcaatagggg agccaggccc gtatccgtcg      3600
     tatgcggccg ccgtgcaagt gacccaaccg aacgtcgcga gaaacagcgg agcgccggcg      3660
     tggactggag gccaatgggt atggccatcc gtaccccgac ccaatgtagg ggggaacttg      3720
     gggccgcgac ctacgatccc gcctccacca gctcccgccg cccagtccaa cccgttccgc      3780
     atgcttggag agaatcaagc tagcgatcgt cagcgccctg ggccgtttat gggcgcctgt      3840
     tttacgtgta gtggcgtagg ccaccgctcg gcacaatgcc ccgagagctt atgttatgcg      3900
     tgccagcaaa agggccatat gtcgcgcggg tgccctaacc gaccccctcg ggtcgagggc      3960
     gcggtcgggg gcacgatgcc gcggaatgtg tattgccaag tatgcggcct tcgtggtgtg      4020
     accttcaaat cgtgtagcgt gtgcgagaaa cttcgtgaga gtctgggaaa ctggcaactg      4080
     gggggccagt aaagagcttg ctccctggac cccccagggc gggatgcgag acgacggaga      4140
     cagcgagaga agcgtgtgaa gcgatgaagc gaggcgaagc gaatgcgaaa aatcgatcga      4200
     gtgacgagaa gcgtagcgac ctggctggtg atagcggtag tatcaagtta ttcggaaagt      4260
     cgaagagaaa gcagatagtg agtagcgaga taagcgtgac ccctgattcc gagtcagaag      4320
     aggtgggtct gcaggatgtt cgcggattgt tcgaaggaga tgatgaggat gcaggggtca      4380
     atcgagcgat agcgccaagc atgcgcgtga tgttgggcgg cgacgtactg agcgagctta      4440
     agagtacacc tgtccctgag gggaataggg ctagaagaaa tatttggctg aggcctcgtg      4500
     gaggggaggg ggtgtcactc ggaggcgaga aggaagtgga agcgagtgcc agcgagcggg      4560
     aggacgatcg tctgtttgaa tggcccaagc cagtgtcatg ggacgcgttg aatagcgagc      4620
     cgttgaaggt gtttaagacg gtggacgaga tgttgcagga gagtgtcgag aagagggcgg      4680
     ctaagccccg gaatgagggc cctctcggac tttccctcga cgacgttttc ccctcggcga      4740
     ccctcggttt gaagctcctg agcgatgagg aacgtgcgaa gtatgcaggt gggttgcatg      4800
     tggggctcca cgaagaaatt gccggcgtga gcgatgataa tcgcaactat atttgtgtgt      4860
     cgttaggggg acagagctac aaggctttat tagacccagg agccacctcc tcactaatcg      4920
     ggcctaaagt ggccgataaa ttcgagaagc gcctgttgcc aagtaactcc gcgatgcgta      4980
     atgttaatgg gggtgtgact agagtgttgg gggtgcttaa ggcacaaata gacctcggaa      5040
     cgagggaagg cgttttgtat ttgaaagccg tgccaaacat cgatcaggac cttcttttgg      5100
     ggatggactt ctgtcagaac tttgagatcg aggctaactt cggtaagcga ctatggcgag      5160
     cgagcgaagg accatgggct tcattcgtcg gggggagcga tgaacctgag agagtgattt      5220
     acgcggaatg cgccggtatc gtggaagtgg gtgacgatca gcgtggccga gtgaataaac      5280
     tgatcgagca agtattatcg tcggccaccg aagcgccagg aataactaaa ctaactgagc      5340
     acgttattcg cgtgaccgat cgcacaccga ttcgacatcg gttgaggcgt atgtcgccgc      5400
     ggatgcagga aatagcgacc gaggaagtag agcgaatgta caacgagggg ataatcgaaa      5460
     aatcgtcgag cgattatagt agcgccccag tgatgataaa gaaaccggat gggacttacc      5520
     gattttgcat cgactttcgc gacttaaata aggtgacgac tcgcgatgcg taccccttgc      5580
     cgagtatgga ttcgattctg gaccgactcc gaagtgcgcg gtatctatcc aaaatcgatc      5640
     tgaaacaggc ctactttcag atacccatgg aagcctcgag taggaagtat accgcgtttt      5700
     cgatgccggg ttcagggctg tggcattttc gacggatgcc gttcggcttg actaatgcgc      5760
     cgatgacgtt tcagcggctc atcgacgctt tattcgggcc ggacttgcaa cccaacgttt      5820
     tcgggtatct agacgatatc atcgtagcga cggacgattt tgatgaacac ttgcgctatt      5880
     tggaaatagt catgcgtcgg gtaacgggag ccgggttaga gatcaaattt gaaaagtgcg      5940
     agttctgctt gtcgcaactc acctacctgg gtttcatatt agataaggat gggttgcgcc      6000
     ccgatcccga gaagattgcg ccggtattga aatatcccgc ccctagggat gttaagcaat      6060
     tacgccgatt tttagggatg gtcgggtggt atagccgatt tatcgaacgt gactcggaga      6120
     taaaaattcc attagttaaa ttattgcgca agaaacaaat gtgggagtgg gaagcggagc      6180
     agcaggaagc gttcgacaaa ttgaaggggg ccctaacaga cgcaccggta ttagcgcgac      6240
     cggattttgc caagccattc accgtgcaga ctgacgcgag taactatgcg atcggcgcgg      6300
     tgttatccca agagcatgag gatggcgagc accccatcgt gtatgtgagc cgtgtgttaa      6360
     cacctgcgga gaagaattac agcgtcacgg agaaggaatg tctcgcggta atttgggcac      6420
     ttaaaaaact gcgaccgtac gtggaggggt atcggttcac tgtgattacc gatcacagcg      6480
     ccctgaagtg gatcaaagac ttgcgcgaac cagcggggcg attagcgagg tgggcgttag      6540
     agatgtccca atgggacttt gagatcgtgc atcgtaaggg cgccatgaac cacgtgccgg      6600
     acgcgctatc tcgattgtcg ggggaagagc aggaaatagc tgcgtttgac gagattagtg      6660
     acgagtggta cgttaaaatg acgaaagagg tggtcgaata tccgctcaaa tataaggact      6720
     ggcgcgtaga ggacgggaga ctatatcgtc accgggtaga tttgctgtta gatccgatca      6780
     cgcatcgaga ggaaaaatgg cgattggtag tgccggaaaa ccataaggag cgcgtcatga      6840
     ccgatgcaca ctgttcgccg tcgagcggac acatggggat cgagaaaact tacgatcgcg      6900
     tagctcgtga atattactgg cggggaatgt attatgacgt caagaggttc gtaaaagcgt      6960
     gcgaattgtg tcagcagttt aaagtgccgc agacagcccc gcaagggtta atgggtaagc      7020
     gaatcgtgga gagaccgtgg gccgtcgtgg ccgccgatct gatggaattt ccgccgagta      7080
     aaagtggcca taagtacttg attgttttcc aggacttatt cacgcgttgg atcgaagtta      7140
     agccgtttcg taaagccgat ggtaaaagcg tagtgcgagc gttagaggaa ctaattttat      7200
     ttcgatggga gacgccggag tactttttga cggataatgg ccgcgaattt agtaataagt      7260
     tgatcgccga gacattaaag gagtacgggg tccagcatgt tttcacacct ccctaccatg      7320
     cccaagccga tcccgtggag cgaactaatc ggactttaaa gcaaatgata gcaatatttg      7380
     taggcgccga tcatcgcaac tgggacctgc atgtgcatga gtttcgccac gcggttaaca      7440
     ctgcgactca agcgacgttg aaagtttcgc cggcgttctt gaactacggc agaaatccga      7500
     agccagtgaa aagtctgcgt cgagaggtcg aacctaaaga gaaaatcgag cggatttcac      7560
     cggaggcgtg gggggatcgg gttaagcgac tggatgcgct gcgagactta gtagctaaac      7620
     acatcgaaga cgcaagatca aaacaagaga ggcattataa tcgcggacgt cgcgatgtgc      7680
     gttttagcgt gggtatgcaa gtgatgaagc gtactcatca tcagtctgat gccgcgaaga      7740
     aattctcagc aaaactagcg cccaagttcg aggggccgta cgagatcgtc gcggtaaaat      7800
     caccggtagt gtttgtcctt cgcgatggaa ataaggagcg cgttgcacac gtatcggaca      7860
     tcaagcgata tgtgcccccg cgagggaagc caagcaccta atggcgctta cccgagattt      7920
     tcgcgacttc ctcttgcttc tttcgactgc ctatcgtctt actctttccc atactcatcc      7980
     ttcttctcac caggtgtaag tcgtcgatgt tagagtataa aaggccacgc agcaatgcag      8040
     caagagtcac cgaccaaggg atcagtggga tgccaggttt agcatacccg tgtaagtaat      8100
     cgtcgtttgg atatttttac atttttactt gagacgtttt tcggagtaga ccgaacactc      8160
     agggagatgt tcgttctagg ggaggggaa                                        8189
//
ID   Gypsy-12_CoFl-LTR repbase;    DNA;    INV; 1203 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-1203
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2306-2306 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1203 BP; 304 A; 256 C; 360 G; 281 T; 2 other;
     tatgacggag tcatttttct ctgaccctat agcattaagc gccgaaacgc gtcatcaagg        60
     tggaatctat tttgatttaa aagaagctaa taaaggtccg ggtctgtgtg tttcatgttc       120
     tacgtgagag taatcggatg caaggagtag cgccaaggag agaagaggag acatagcgcc       180
     gaagaaaagc ccaagaatgt atagttctgc gtattagaga atatttgtaa ttaccgcgcc       240
     aatgtcataa tccagtactt ctttatcgac gaagattgta tgtattmaga gtatgtattg       300
     taaattgcgt cgcgttcgag tgcgtatgaa taatgtcctg gcggtaagaa tcagaagtat       360
     gtatgtagat atagtgcggt aatgcgcgag gctgcactaa ttggtgggcc taacggacac       420
     tcttgcagta gccttcgagc gaaccagagc ttcccgagtt ttcgcgtttc cggtagcaca       480
     gatcgagaga gagagaatcg agagagagag agcgaaggag aagagcggag aatcagttcc       540
     caagccagcc ggaaacgacc ttgcgaccga cgaccaagga gacgcggacc atcgccaccc       600
     ccagctgtca tctgcgagac cagggcatcg acaggccaag agctgatttg acccggaaca       660
     tggtgaaccc ggaggtaagg gtaaagtaga gtgtgcgagc gtgtgtgtgt ccttacgtgt       720
     gtgttggggg atcgagtagt gcgggactcc cccaggaagc gtggagtgcg agaacaagag       780
     agtccggggg aaagcgtgat tgtcgcggat taktgcgata gcgccggatt gcgccgagat       840
     tcgggcctaa aagcccacgt gtaaaagttc gccaaaaata aagtgaagtg ttcttgaaat       900
     cattaactcg ttgtggtcgt gcatgtgttt tttcctcctt cagattttac aggtcgcgcc       960
     tcgtttctcc ttgggagagt agtccgatcc cgacggacta ccgccggcag gacctcctca      1020
     gagacgagtc tcctgggcca agcagcggac atcgtgagcg tggggacagg ggttgttttt      1080
     cgcgtttcag gatacggcgg actttggcga gattattggc gatagtgtct ttggacgttg      1140
     tctcgggacc gccctggctg cgacactcta tagtgtctca gggcgcgaaa gtgcaacgtc      1200
     aca                                                                    1203
//
ID   Gypsy-12_CQ-I repbase;    DNA;    INV; 5013 BP.
XX
AC   AAWU01009192;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_CQ_;
KW   Gypsy-12_CQ-LTR; Gypsy-12_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5013
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 403-403 (2011).
XX
DR   GenBank; AAWU01009192; Positions   63038   68050.
XX
CC   Positions [3740-4210] - Integrase core
CC   'CAATAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           656..4885
FT                 /product="Gypsy-12_CQ-I_1p"
FT                 /translation="MSDSNSKMPFSIEPFIPGAVSFLQFLEQLEWVFEHHK
FT                 VTSDEDKRTSFMATCNREVYSEIKRLFPGKDLKKLTFKEITEALQKRYDKS
FT                 VAGFIQRFNFYNRVQGSNESAEDFILDVKQQAELCDFGDFKNTAIRDKLIC
FT                 GMADSVLQESLFDEEDLSLSRVEKLILNREANNARKKIIAGDRRASVLNRL
FT                 GRRDGAPAYKGRSRSRGRDLRGRSRSRSGSFDRRKRDSKKQFFCTFCRRNG
FT                 HTRPYCYDLPKNKKSVKFVDEQPSVQQSSDQPKSSRNKFDRSVTDDECDMQ
FT                 CLSISSVNKVNEPCIRKVFVASLLISMEVDCGAAVSVVCWSTYNKKFSHIP
FT                 LEKCNKKLAVINGSSLKVEGQLSVVVELNDIRQKVSLIVLRSFNEFIPLLG
FT                 RDWLDVFFPGWRNTFGETSRVNQVANTADQVLAEIESKFSNVFDKSLATPI
FT                 KGFEADLVLRDDTPIFKRAYDVPLRLRDQVYQHLESLEKDGVITPVDASEW
FT                 ASPVIIVVKKDGGIRMVIDCKVSINKVIIPNTYPLPLPQDLFASLAGAKLF
FT                 CSLDLTGAYTQLLLSKKSRKLMVINTIKGLFLYNRLPQGASSSAAIFQKIM
FT                 EQILKGIVGVYCYLDDVLIAGKDFEDCKSKLYLVLDRLSKANVKVNFKKCK
FT                 WFVSSLLFLGHVLTNDGLLPCPDKVETIRRAKIPSNVSELNAFLGLVNYYG
FT                 KFIPHLSSRLSCLYRLLKKDVKFVWTGDCSRVFEDCKQALLTSKMLELFDP
FT                 EKPVVVVTDACGYGLGGVIAHEINGEERPISFTSFSLTEAQKSYPILHLEA
FT                 LAVVCTIKKFHKFLFGKEFTVYTDHKPLVGIFGKEGRNSLFVTRLQRYVLE
FT                 LNIYKFEIVYRPSSKMGNADFCSRFPLPEEVPLSLQNEFIKTLNVYNEFPL
FT                 DHILIAKETKEDKLLQKILNYMKHGWPQNLDRCLANVYAQHQDLEFVDGCL
FT                 LYQDRVVIPFSLQKQILKLLHRNHSGITKIKQLARRTVYWFGMNGDIESFV
FT                 KSCHVCCQMNVVPKQVPHSPWIPTTKPFARIHADFFHFDKKVFLVIVDSFS
FT                 KWIEVEYMKFGTDARIVKSKFICFFARFGLPDVVVTDGGPPFNSKDLIDFF
FT                 EKNKVVVMKSPPYNPSSNGQAERMVRLAKDGLKKLLLDPEMNKLTTEDLVS
FT                 CFLFSYRNTCLEDGSSFPSERLFNYKPKTLLDLIHPKNSFSKHLTPRDVEK
FT                 DVVVVGDRHVKNRKFDWVDRLSPGDSVYFKNFKPTEIRRWLLSSFIRRVSP
FT                 NTFQVSLGGRTYLAHRNQLKEAPKEDYQRKVVVTARSERRGTKRGRERYGD
FT                 AAYEDGEDSFYGFAADSFVFAEDSNDGVDVDMEVDMEREGVSRLSSVDRES
FT                 QIRDDPVEGSSTQRLPDFSVPSIDNRAVVRRSTRSKRYKKDKDFVYY"
XX
SQ   Sequence 5013 BP; 1300 A; 827 C; 1261 G; 1625 T; 0 other;
     gtggcgacga ggaaaagtag aagtttttgg gttttttttt cgcacaagtt ggtgcagcgt        60
     gacgttttgt tgctggagta aggacgtgcc gttccggatt gcagtttttt tcaacgtttt       120
     tatcggagtt tcattcccgg cggaacgagc atcagcatcg gacggaggac gcgcatttga       180
     cggacttcgc agtttagagt ttttttctgg tggagttttt tcccgcttgg ttttgccaag       240
     gaggtgtcgt ttacgggtga agttggtttt tccagaaaac tgcgtaagta gagtgcaaat       300
     ttgctgcgtc taggaggtcg cattgttgag aattgtgcgt gtgttcattc gccattttct       360
     ttgcctagca agcgaggcat ttggcgtcag tattcttttg tgttgattga tttcacacat       420
     actaccacac aacacttaag atacacacac ttttagtggt gatacatttt tgtgtcgcac       480
     aggttgttgc atcattgtag catcgttgtt gcatcattat tcaatttggt gtgcaattga       540
     ttgctgacag ttttgttgcg tttgatgtta gcaacgtttt agtttgacga gtttttattt       600
     tgagaacgat ttcttatcat tgtttgttta cgttttgttt tatttatttt ttattatgtc       660
     agattcgaac tcaaaaatgc cgtttagtat cgagccattc atccccggcg ccgtttcgtt       720
     tttgcaattc ctagagcaat tggaatgggt tttcgagcat cataaagtga cgagtgatga       780
     agacaaaaga acgtcgttta tggcgacgtg taatcgcgag gtttattcgg agattaagcg       840
     tttgttcccc ggtaaagatc ttaagaagct cacgtttaag gaaattacgg aagcgttgca       900
     aaagcgttac gacaagtcgg ttgctggttt tattcagcga ttcaacttct acaatcgtgt       960
     tcaagggtca aacgagtcgg cagaggattt tatcttggac gtgaagcagc aagcggagtt      1020
     gtgtgatttc ggcgacttta agaacacagc gatccgcgac aagctgattt gcgggatggc      1080
     cgattccgtt ttgcaagaat cgttgtttga tgaagaagat ctgtccttgt cccgagttga      1140
     aaagttgatc ctgaatcgtg aagccaacaa cgcgaggaag aagataatag ctggtgacag      1200
     acgtgccagt gtgttgaatc gtcttggcag acgtgacgga gcacctgctt acaagggacg      1260
     gtctcgtagc agagggcgcg atctgcgagg aaggagcagg agtcgttctg gttcgtttga      1320
     ccgcaggaag cgtgattcta aaaagcagtt tttctgcacg ttttgtcgtc gtaatggcca      1380
     taccagacct tactgctacg atttgcctaa aaacaagaag tcagtgaagt ttgttgacga      1440
     gcagccatca gtgcaacagt catcagatca accaaagtcg tcgcgcaaca agtttgatcg      1500
     gtcggttact gacgatgaat gtgacatgca atgcttgagc atctcgtcag ttaacaaagt      1560
     taatgagccg tgtatcagaa aagtttttgt tgcaagtttg ttgatctcga tggaagttga      1620
     ctgtggtgca gctgtttctg ttgtttgctg gagcacttac aacaagaagt ttagtcacat      1680
     tcctttagaa aagtgcaaca agaagctcgc ggtgatcaat ggcagcagtt taaaggtcga      1740
     ggggcaactc tcagttgtgg ttgagcttaa cgacatacgt cagaaagttt ctctcattgt      1800
     tttgagaagc ttcaacgagt ttatcccttt gctaggacga gattggctgg acgttttctt      1860
     tccgggttgg cgcaacacgt ttggagagac cagcagggtg aatcaggtgg caaatacggc      1920
     ggatcaagtt ttagctgaga ttgagagtaa gttttcaaac gtttttgata aatctttagc      1980
     tacgccgatt aaaggttttg aggcagattt agtcctgaga gatgatacac cgattttcaa      2040
     acgggcttat gacgttccat taaggcttag agatcaagtt tatcaacatt tggaaagttt      2100
     ggaaaaagat ggcgtcataa ctccggttga cgcaagtgag tgggcgtctc cggtgatcat      2160
     tgttgtcaag aaggatggtg gtattaggat ggtgattgac tgcaaagttt cgatcaataa      2220
     ggtcatcatt cctaacactt atccacttcc gttgcctcag gatttgtttg cttctttagc      2280
     tggagctaag ttgttttgct cgctggattt aactggagcg tatacacagt tgcttttgtc      2340
     aaagaaatct agaaagttga tggtgattaa cactataaag ggtttgtttt tgtacaatcg      2400
     tttgccgcaa ggtgcttctt caagtgcagc aatttttcag aagatcatgg agcaaatttt      2460
     gaagggcatt gttggagttt attgttattt agacgatgtg ttgatagcag gcaaagactt      2520
     tgaggactgt aagagtaagc tttacttggt tttagaccgt ctttctaagg ccaatgtaaa      2580
     agtcaatttt aagaaatgca aatggtttgt ttcaagtttg ctgtttctgg gacatgtgtt      2640
     gacaaatgat ggtttgttgc cgtgtccaga taaggttgag acgattcgga gagcaaaaat      2700
     tccgagtaat gtttcagagc ttaacgcatt tttggggtta gtaaattact acggtaagtt      2760
     tattccccat ttgtcttctc gcctcagttg tttgtatcgt ttattaaaga aagacgttaa      2820
     gtttgtttgg actggtgatt gtagtcgtgt gtttgaagat tgtaaacaag ccttgctcac      2880
     ttcaaagatg ttggagttgt ttgatcctga aaagccagtt gttgttgtta ctgacgcttg      2940
     tggttacggg ttaggtggag taatagcgca tgaaatcaat ggtgaggaaa gaccaataag      3000
     ctttacttcg tttagtttga cagaagccca gaaatcctac ccaattttac acttggaggc      3060
     acttgctgtt gtttgcacca taaaaaagtt tcataagttt ttgtttggca aagagtttac      3120
     tgtgtatacg gatcataaac ctttagttgg tattttcggc aaggaaggca ggaacagttt      3180
     gtttgtgacg cgtttgcaga gatatgtttt ggaactgaat atctataagt ttgaaatagt      3240
     ttacagaccg tcatcaaaaa tgggcaacgc agatttctgc tcaagatttc cattgccaga      3300
     agaagttcca ctttcacttc agaacgagtt tattaagaca ctgaatgttt acaacgagtt      3360
     tccattggac catattttga ttgcaaaaga aacaaaagag gacaagttgt tgcaaaagat      3420
     cttgaactac atgaagcatg gttggccaca aaatttggat cgttgtttgg caaatgttta      3480
     tgctcagcat caggatctgg agtttgttga tggttgtttg ttgtatcaag atcgtgttgt      3540
     tattccgttt agtttgcaga aacagattct aaagttgttg catcggaatc attctggtat      3600
     tacaaagatt aaacagttgg cacgccggac agtttattgg ttcggtatga acggtgatat      3660
     tgaaagtttt gttaaatctt gccatgtttg ttgccagatg aatgttgttc cgaaacaagt      3720
     tcctcattct ccttggattc caaccacaaa gccgtttgct agaattcatg ctgatttctt      3780
     tcattttgat aagaaagttt ttctagttat tgttgacagt ttttcaaaat ggattgaagt      3840
     tgagtacatg aagtttggta cagatgctag aatagtaaag tcaaagttta tctgtttctt      3900
     tgctaggttt ggattgccag atgttgtcgt gacagatggt ggaccaccgt ttaattcgaa      3960
     ggatcttatt gatttcttcg aaaagaacaa agttgttgtc atgaagtctc caccgtacaa      4020
     tccatccagc aatggacagg cagagcgcat ggttagacta gcaaaagatg gtttgaaaaa      4080
     gttgttgttg gatccagaga tgaacaagtt gactaccgag gatttggttt cgtgttttct      4140
     gtttagctat cggaatactt gtttggaaga tggttcttcg tttccttccg agaggttgtt      4200
     taattataag ccaaagacgc tgttggactt gatccatcca aagaatagtt ttagtaaaca      4260
     cttgacgcca cgtgacgtgg agaaagatgt tgttgttgtt ggtgatcgtc atgtgaagaa      4320
     tcgaaagttt gattgggttg accgtttaag tcctggtgat tctgtttact tcaaaaattt      4380
     taaacctaca gagatcaggc gttggttact atcaagtttt ataagacgtg tttctcccaa      4440
     tactttccag gtttccctgg gtggtcggac gtatctcgct catcgcaatc agctgaaaga      4500
     agcgccgaag gaggactatc agcggaaggt cgtggtcacg gcacggagcg agcgtcgagg      4560
     tactaaaagg gggagagagc ggtacggtga tgctgcttac gaggatggag aggacagttt      4620
     ttacgggttt gctgcggatt cgttcgtctt cgctgaagat tcgaatgatg gtgttgatgt      4680
     cgacatggag gttgacatgg aacgagaagg agtttcaagg ctgtcgagcg ttgatcgtga      4740
     atcgcagatt cgcgacgatc cagtcgaagg aagttccaca caaaggctcc cggatttttc      4800
     tgtcccatcg atcgataatc gtgcagtagt gcgtcgttcg acgcgatcga aacgttacaa      4860
     gaaagataaa gatttcgttt attattaggt tttttttcct ttgttgaatt gtttagtttg      4920
     tttaaaggtt tttcctaata gctaagttgt ttaacattct gaattagtta aataatgttg      4980
     attatattta gttgtttact taagggtgag aac                                   5013
//
ID   Gypsy-12_CQ-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   AAWU01009192;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_CQ_;
KW   Gypsy-12_CQ-I; Gypsy-12_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-172
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 404-404 (2011).
XX
DR   GenBank; AAWU01009192; Positions   62866   63037.
XX
SQ   Sequence 172 BP; 42 A; 53 C; 30 G; 47 T; 0 other;
     tgtggtaacc ccatgttacc atcggcgtac ccctcgccag tgcgatgtta tttgatacga        60
     attgtaaaac tttgaattac agatcactcc cacagtgacc gtacgaagca caagacacgc       120
     gtctcctttt ctcctccatc cgaactcttc tctaacctca cgggttagct ca               172
//
ID   Gypsy-12_DAn-I repbase;    DNA;    INV; 4175 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   19-JUN-2013 (Rel. 18.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DAn_;
KW   Gypsy-12_DAn-LTR; Gypsy-12_DAn-I.
XX
NM   Gypsy-12_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4175
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-4175
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (14-MAR-2012).
XX
DR   [3] (Consensus)
XX
CC   'TAAGTG' target site duplication
CC   LTRs are 97% similar to each other.
CC   [3] The original sequence included an R1-2_DAn insertion. It was
CC   removed from the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..973
FT                 /product="Gypsy-12_DAn-I_1p"
FT                 /translation="MAENEDFADAQDAAQFTSTAMIQSVFGKMPFPNLQSI
FT                 TNIEMFFTKLESWFALQGLGARKEQEKFAAVIAYADPKYLEQVHDLVNNPP
FT                 ETAPYSTLKEAILSKFTDSEMVRLDRLATGIQLGDSRPSHLLCQLQQTKAT
FT                 CDESVVRRYWIKRLPPPVRAVIVGMIGSSPQTKLSQLAKAADAVMDSLNDD
FT                 AADHVYAFSKNKQQQSHQEERVITLTKRLDDNDKALQQINNKLGQLLNHNQ
FT                 TRGRNNQRPQNYYRNNAPSNDRSSQQLCWYHNKYGRDAQRCSQPCSFTAFN
FT                 EDDQKN"
FT   CDS           934..4155
FT                 /product="Gypsy-12_DAn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MLLYSVQRGRPKKLNATVRGSGGSLDGLSNFASSYHQ
FT                 AFQINVHRISYCNRLFVPDAQSGRKFLVDTGADVSIIPXSTIHKNIQNANR
FT                 HTLFAANGTEIKTYGTIRLTLDLGLRRPYTWNFVIADTNTPIIGSDFLHHY
FT                 NLLVNIKEAKLVDAKTRLTCCGIHTHQNSSIIKTFNTSNAFAQLLEEFKDI
FT                 TQFNTITHRPSSTTSVTHVIDTKGAPPFARPRRLTPEKLRAAKNEFQYLMD
FT                 MGVCRPSKSPYASPLHMVRKPTGEWRPCGDYRALNAQTIPDRYPLPHIQDC
FT                 THVFYGKTIFSKIDLNRAYNQIPIEPKDIPKTAITTPFGLFEFTHMTFGLC
FT                 NAAQTFQRYMHTAFRDLDFVFVYVDDIAVASANIQQHHIHLRQVFEKLQEY
FT                 NLTINPSKCSFGKESIEFLGHKINHQGIKPLQTKVKAITNFPLPKVAKELR
FT                 RFLAMINFYRRFLPNAIQHQAPLVQLIPGNKKNDSTPINWTTETIDKFNSC
FT                 KNSLAQAALLAHPAPNANLSLSTDASNIAVGAVLHQVINSEYQPMGFFSIK
FT                 LSETQRKYSTYDRELLAIYLGIKHFRHMLEGRVFHIRTDHKPLVYAFDQKP
FT                 EKASPRQLRQLDFIGQFTTSITHVAGDENTTADTLSRIEAIGDNCINYNEI
FT                 SDAQLRCPELQKLLNSNTSSLQLKAVNIPHTHHSLICDVSTSSVRPFIPQP
FT                 LRNKIIEKLHNIAHGGVKATIKLLKQRFVWPSMHKEISEFVKHCIPCQRSK
FT                 ITRHVRSPLQHFTLPNQRFEHINLDLIGPLPQSGPYRYCLTIIDRYTRWPE
FT                 AIAIEDMQADTVASALIRSWISRFGIPARITTDQGRQFESRLFNELSRLLG
FT                 IDHLRTTAYHPQANGIIERWHRTLKAAIMCKNHANWPQKLPIILLGLRTAY
FT                 KPDIQATPAQLVYGTTLRLPGEFFHQSNKIQSQTEYAKELEKIMQEIRPAQ
FT                 TAHHDTSKPFIFKELETTSHVFLRNDAVRTSLQPPYDGPFEVIERNDKHFT
FT                 XSVAGRAVKVSVDRLKPAFVIMQHPIDKSSTLEPPNKGPDLQALGESPETT
FT                 SPPRPRRTIRLPARFAP"
XX
SQ   Sequence 4175 BP; 1389 A; 1153 C; 731 G; 897 T; 5 other;
     taattggtga ccctcgacaa ctagaacaat ttcaaatcac atcaaagtct tgagtacata        60
     cacacaagta tttcacaaca tggccgaaaa cgaagacttc gctgacgcgc aagacgctgc       120
     gcaattcact agcacagcca tgatccaatc cgtatttgga aagatgccgt tcccaaattt       180
     acaatcaatc acaaacatag aaatgttctt cacgaagtta gaaagttggt tcgcactaca       240
     aggacttggt gcacgaaaag aacaggaaaa gttcgctgca gtcatcgcct acgcagaccc       300
     caaatacctg gaacaagtac acgatcttgt gaacaatcca cccgaaacwg ccccttattc       360
     caccttaaag gaagcgatcc tttcaaagtt tacggactcg gaaatggtac gtttggacag       420
     actcgcaact ggaattcagc tcggcgacag ccgcccaagc cacttactct gccaactgca       480
     gcaaaccaag gcaacctgcg acgaatcagt agtacgacgc tactggatca aacgtttgcc       540
     tcctcccgtg cgcgcggtaa ttgtcggcat gataggaagc tcaccgcaga ccaaactctc       600
     acaactkgca aaagcagccg atgcagttat ggattcctta aacgacgatg cggctgacca       660
     cgtatatgct ttttcaaaaa acaaacaaca gcagtctcat caagaagaac gcgtcataac       720
     gctgaccaaa cgactcgacg ataacgacaa ggctctgcag cagattaaca acaaactggg       780
     acagttacta aatcacaatc aaacgcgtgg cagaaataat cagcgacccc aaaattatta       840
     ccgcaacaat gcaccttcta acgatagatc gtcccaacaa ctgtgttggt accacaacaa       900
     gtacggcaga gatgcacagc gttgcagcca accatgctcc tttacagcgt tcaacgagga       960
     cgaccaaaaa aactaaatgc aaccgtcaga ggatcaggag gcagccttga cggattaagt      1020
     aatttcgcct cttcttatca tcaagcattt caaatcaatg ttcacagaat ttcttactgc      1080
     aaccgacttt tcgtaccaga cgcccaatct ggtagaaaat ttttagtcga tacaggagcc      1140
     gacgtttcga tcattccatm cagtactatt cacaagaata tacaaaacgc caatcgccat      1200
     acactctttg cagcgaacgg cacagaaata aaaacatacg gcaccatccg cttgacactg      1260
     gacctaggac tacgtcgtcc ttacacttgg aacttcgtta ttgctgatac caatactcca      1320
     atcattggat ccgattttct acaccactac aacctccttg tcaacatcaa ggaggctaag      1380
     ttagttgatg ccaaaacacg cttgacatgc tgtggtatcc acacacatca aaattcatca      1440
     attattaaaa cattcaacac atccaacgca ttcgctcaac tgttggagga attcaaagac      1500
     atcacacaat tcaacacaat cacacatcgt ccatcgtcaa cgactagcgt cacccacgtc      1560
     atcgacacca aaggagcacc acccttcgcg cgaccacgaa gactgacccc agagaaactc      1620
     cgagcagcaa agaacgagtt ccaatattta atggacatgg gagtatgcag accttctaaa      1680
     agcccatatg cttcaccttt acacatggta cgaaaaccta ctggtgaatg gagaccatgc      1740
     ggtgactacc gcgccctcaa tgcgcaaacc ataccggacc ggtatccgct accacacata      1800
     caagattgca cacacgtgtt ctatggaaaa actattttct ccaagatcga tctcaaccgc      1860
     gcatacaatc aaatcccaat agaacctaaa gacatcccta aaacggccat aacaactccw      1920
     tttggtctgt ttgaattcac acacatgaca tttggactgt gtaacgcagc tcaaacattt      1980
     caacgctata tgcatacagc attcagggat ttagactttg tctttgttta cgtcgacgat      2040
     atagccgtcg catcggccaa catacaacaa catcatatcc atctgcgcca agttttcgag      2100
     aaactgcaag agtacaatct cacgataaac cccagcaaat gtagtttcgg aaaagaatca      2160
     attgagttcc taggacataa aattaaccac cagggtatta aacctctaca aaccaaggta      2220
     aaagccatta caaatttccc cttacccaag gtggccaaag aattacgaag attcctcgca      2280
     atgatcaact tttatagacg attcctcccc aatgctattc aacatcaagc tccactggtg      2340
     cagcttatac caggcaataa gaaaaacgat tccaccccaa tcaactggac aacagaaaca      2400
     atcgacaaat tcaacagttg caaaaattct ttagcacaag ctgcactatt ggcacatcct      2460
     gcaccgaacg caaacctttc gctaagcaca gacgcgagca acatagcagt gggagcggtt      2520
     ctacatcaag tcatcaactc ggaataccaa ccaatgggat tcttcagcat taagctctca      2580
     gaaacacaac gaaaatatag cacatacgat cgggaactcc tagcaattta cctcggaata      2640
     aaacatttcc gccacatgct ggaaggcagg gtttttcaca tccgtacaga ccacaaaccc      2700
     ttagtatacg ccttcgatca aaaacccgaa aaagcatccc cgcggcaact tcgccaattg      2760
     gatttcatag gacaattcac cacatctata acacacgtag caggagacga aaatacaacc      2820
     gcagatacgc tttcccgcat cgaagccatc ggagacaatt gcattaatta taatgaaata      2880
     agcgatgcgc aattacgctg cccagaactc caaaaactac tcaattccaa caccagctcg      2940
     cttcagttaa aagcagtaaa tattcctcat acacatcact cactaatttg cgatgtatct      3000
     acttctagcg tacggccttt cataccacag ccgcttagaa acaaaatcat tgagaagcta      3060
     cacaacattg cacacggtgg agttaaggca actataaaac ttttaaaaca acgattcgtt      3120
     tggccctcca tgcacaaaga aatctccgag ttcgtaaaac actgcattcc ttgccaaaga      3180
     tcaaaaatca cccgtcacgt tcgctcacct cttcaacact ttacactacc caaccaaaga      3240
     ttcgagcaca tcaatctgga tcttattgga ccactaccac aatctggccc gtacagatac      3300
     tgcctcacca ttatagatcg gtacacgagg tggccagaag ccatcgctat tgaagacatg      3360
     caagccgata ccgtagcatc cgccctcatt cgctcctgga tctccagatt tggcataccg      3420
     gctcgaatca caacggatca aggcagacaa ttcgaatcga ggctattcaa tgaattatca      3480
     aggctactgg gaatcgatca cctacgtaca accgcatatc atccacaagc aaacggaatc      3540
     atcgaacgct ggcatcgaac actaaaagct gccatcatgt gcaaaaacca tgcgaattgg      3600
     ccacagaaac taccaataat tcttttagga cttcgcacag cttacaaacc ggacattcaa      3660
     gcaacacccg cacagctagt atacggaact acgctcaggt tgccgggaga gtttttccac      3720
     caatcaaaca aaatacaatc ccaaacggaa tatgccaaag aattggaaaa aatcatgcaa      3780
     gagatccgtc cagcacaaac agctcatcat gacacctcca aaccatttat atttaaggaa      3840
     ttggaaacca cctcacatgt attcctacga aatgatgccg tacgcacttc acttcaacct      3900
     ccatacgacg gtccatttga agtcatcgaa aggaacgaca aacacttcac cmtatccgtc      3960
     gctggacgtg cagtcaaagt atcagtggac cgcctcaagc ccgccttcgt aataatgcaa      4020
     cacccaatag acaaaagctc aacgctggaa ccaccaaata aaggaccaga cctacaggct      4080
     cttggagagt caccggaaac aacctcacct ccaagacccc ggcgtacaat tagactccct      4140
     gctcgctttg caccatgaag tctagggggg agtac                                 4175
//
ID   Gypsy-12_DAn-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   AAPP01018841;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DAn_;
KW   Gypsy-12_DAn-LTR; Gypsy-12_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018841; Positions   39188   39442.
XX
SQ   Sequence 255 BP; 91 A; 51 C; 31 G; 82 T; 0 other;
     tgtggcgagt caaccgacac aatttgaaat tgcaacgaat aaattctttt tcgccatagt        60
     atctaaaatc cctttgggca tactaaaaga ctactcgcta caagaagctt cactcttcaa       120
     gaaatcatct taatattgac aacatataca ttcaaccaaa tctttgtatc cacactattc       180
     atgcagttat ctttaataaa tattaatagt tattaaccaa cgtggttata tttatttgga       240
     gcataaaaga ctcca                                                        255
//
ID   Gypsy-12_DAzt-I repbase;    DNA;    INV; 6665 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6665
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 793-793 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1389..2630
FT                 /product="Gypsy-12_DAzt-I_1p"
FT                 /translation="MEWNEIAKRIDAFHYKFNKSYKCINKDAVIKAETLKY
FT                 HIEILVREYNNVVTLVSRFDNKFTTEHKGKCLRVIKSLNTRLIAVTNRRHI
FT                 QITVPDNIYQLAEFDPNQLNELDESTQSGDAESDSDIETLEESEPIETKLE
FT                 TITISEMAQTVVEFTKLATSLLPEFDGKPENLQSFIDSLNLLDTLKGTHEL
FT                 TAISLIKTRLKGHARNLISNEQTIAAIVTQLSTAIKGESVEVVSAKIRNLQ
FT                 QGNKTATQYTQEVEKLAKALEGAYINDGLTQSLANRYSTATAVKAMTQNCS
FT                 NDKVKSTMQSGIFTNMNDAILKFVDSCTEVMGQSNSVLYYRRGANHYNRGG
FT                 RGYGNGRNYNHNSYNRGGNNNYNNNYNTRGGRRNENSGRGRGNSNQGYNNS
FT                 NVRVVQNASENSPDPLGDNQ"
FT   CDS           2570..6244
FT                 /product="Gypsy-12_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="QCESGAKRVGKLSGPFRRQSVNAKVHSINYSLNIFVT
FT                 FYNHSTKNKLTFLIDTGADISLLKINSDSFKIQEDKIINIQGIGQGVIKSQ
FT                 GTTSIELQSTKYIIPHKFHLVDSDFSIPCDGIIGIDFIKKFNCQLDFKPSK
FT                 DWFIIRPQNLNYPIYVPITYSAGNNTVLLPARSQVVRKIDINSVNDYIFVP
FT                 NQEIHNGIYVANTIAASKHVYIRLLNTTNFDQLVKVNKIEYENLTDYDILN
FT                 TNPENRSKQVLSKLTKNFPEQFRNQLTELCTKYSDVFGLETEPIATNNFYK
FT                 QTLRLKDEEPIYIKNYRSPHSQVNEIQKQVGKLIHDKIVEPSVSEYNSPLL
FT                 LVPKKSLPNSEEKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYF
FT                 SCLDLMSGFHQIELEENSRNITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM
FT                 TIAFSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTDVFNVCRKYNLKLHPEK
FT                 CSFFMHEVTFLGHKCTDKGVLPDDKKFDVIKNYPVPHDADSARRFVAFCNY
FT                 YRRFIKNFADYSRHITRLCKKNVPFEWSIECQNAFQYLKEKLMHPTLLQYP
FT                 DFRKEFCIITDASKQACGAVLTQNRDGIQLPVAYASRSFTKGESNKSTTEQ
FT                 ELAAIHWAITHFRPYIYGKHFVVKTDHRPLTYLFSMTNPSSKLTRMRLELE
FT                 EYDFTVEYLKGKDNFVADALSRITIKELKDIQHKVLKVTTRRQSRQNKACT
FT                 AEKYELLPRQSHNVPKPNVHEVITNDEVRKVVTLRITESKCLFKHGNKVIA
FT                 RMEVSDLYTNGILDLGQFFQRLEKEAGILQISQLKVAPSEKIFESVSKDSF
FT                 KNMGNKILKSLRVALLQPVTQITDEKEVQQILSTYHDDPIQGGHSGITRTL
FT                 AKIKRHYYWKNMTRHIKEYVRRCQKCQISKTKIHTKTPLTLTETPVNAFDI
FT                 VIVDTVGPLPKSENGNEYIVTLICDLTKYLVAIPIKSKSANCVAKAIFENF
FT                 ILKFGPMKTFISDMGTEYKNQILTDLCKYMKIENLTSTAYHHQTLGTIERS
FT                 HRTFNEYIRSYISADKTDWDVWIQYFTYCFNTTPSATHEYCPYELVFGRLP
FT                 KQFIDLNKTNYIDPIYNLDDYSKEIKFRLEIAYKRARIMLEKAKAYRKLAY
FT                 DEKTKNFELKIGDKVLMRNEAGHKLDPVYLGPYIVEKIEDNDNIYIKDSKN
FT                 KKQKVHKDRLKIYIQ"
XX
SQ   Sequence 6665 BP; 2615 A; 1217 C; 1127 G; 1705 T; 1 other;
     tggcgaccgt gacaagttca cgaagctaca atgttgagtt ttgatattta atgaaaaaaa        60
     agtgctgtga ttccactgcg gagcaacagt tctccaccag tcaaaccgac aagaaggaaa       120
     gtgagagcgt aagaagcgta agcgcagaga gatgcgtgca gggtccaagt agacgaagca       180
     cagcaccgtc gaccactgaa tggatctttt gacttacaag ctaatctaaa gcaacaaacc       240
     caacccaacc cagcgatgac cagcgcaggc actgcttaac tgcamtgcgc ttatgagtga       300
     cgacaacaca gattctgctc ctattgagca aagggaagca ctttcccttc aggagcacct       360
     gaaggtgttt ccgaacgatg gaccacgccc actcacaata gctgagtacc gggcacggca       420
     ggagaaaaag ccgacggagc aaaagaagac aaaacgtgga ggacaagtaa gaaagttact       480
     tcaacaaaag cgactgcaac aagatttgct ggcggcagca acgacaccag aagaccggca       540
     acgctacata gagcgcatca acgacctgaa agatgaatta aaacttcgca gccgagcgaa       600
     gccacgcaag ggggccgcaa atatgcgtaa gccttaactt gccatagact taatttctac       660
     ctgtgaattg aagcacgtca gtgcaattca caaaacacta aaatctgcta ggcttttaat       720
     actaacatat gtggttggag aatttttttt tataaatatg aaatgtaatt tgaattgtga       780
     gccaaccaca tacactaaat aactaacttt tccacgtctc tggcgctggg tatttatact       840
     cagcagcgtt tagaatattt gtgtaattga taaatcttgc aataagttca ttgcaatgaa       900
     aatatcgctc caatttcatt ttttcttttt cttcgatttt caaatagagg aatgaataaa       960
     accctattac attctaaaat cccatataag attaaatgaa aactaagatt ttgaaaatac      1020
     aattcaattt tctttcatga aacattaaaa aaaaaaaaaa aactgttctt ttcattgaat      1080
     atatacagcc aaattaaaac tacataatgg ggtggtttag tgagtccagt gaggcaaaag      1140
     ataacactgc taacgttgta aacaacgtca agataattga tcacacggat gatataaacg      1200
     cattatggct cctgttatta attatcacga tagtattagt tttgcaattt ctgcttacac      1260
     tctatgttaa gcataacaaa attatcaaga aaagatacat gaatagggca aataacctag      1320
     ataacgtcta aaaacgaata agtagaaaat agatcaaatt tacaagggta ggataattcc      1380
     attaaagaat ggaatggaac gaaatcgcga aacgtataga cgcatttcat tacaaattca      1440
     ataaatctta caaatgcatt aataaagatg cagttataaa agcagagact ttgaaatatc      1500
     atatagaaat tttagtaagg gaatataata acgtagttac cttagtaagc cgtttcgaca      1560
     acaaattcac gactgagcac aaaggtaagt gtttaagggt aataaaatcc ctaaacacaa      1620
     gattaattgc tgtcaccaat aggcgacaca ttcagataac agtgccagac aatatatatc      1680
     aattggcgga gtttgatccc aaccaattaa acgaattaga cgaatcaact cagtcaggcg      1740
     acgccgaatc tgatagtgac atcgaaacac tagaagaaag cgaaccaatc gaaacaaaac      1800
     tagaaacgat aacaatctct gaaatggcac aaacagttgt agaatttacc aagctagcca      1860
     cttctctatt accagagttc gatggtaagc cggaaaatct tcaaagtttc atagattctc      1920
     tgaatctatt ggataccttg aaaggcacac atgagctaac agccataagt cttataaaaa      1980
     caagactcaa aggccatgcg agaaatttaa taagtaatga gcagacaatt gctgcaatcg      2040
     ttacgcaact gtcaactgca ataaagggcg aatcggtaga agttgtatct gccaagatac      2100
     gaaatctgca acagggaaac aaaacggcaa cccaatacac ccaagaggtg gaaaagctgg      2160
     caaaggctct tgaaggagcc tatatcaatg acggcctaac ccaatcactt gcaaatagat      2220
     acagcactgc aacagctgta aaagctatga cccaaaattg ttcgaacgat aaagtaaaat      2280
     caaccatgca gtcaggcata ttcacaaata tgaatgatgc catcttaaaa tttgtcgata      2340
     gttgcacgga ggtaatgggt caaagtaact ctgtcctata ttatcgacga ggtgcaaatc      2400
     actataatag aggaggccga ggttatggta atggtagaaa ttacaaccac aacagttaca      2460
     acagaggcgg taataacaat tataacaata attacaatac ccgtggagga agacgaaacg      2520
     aaaatagtgg aagaggccga ggtaactcca accaaggtta caataatagc aatgtgagag      2580
     tggtgcaaaa cgcgtcggaa aactctccgg accctttagg agacaatcag taaatgcaaa      2640
     ggttcattcc atcaattaca gtcttaatat atttgtcact ttttataatc attcaactaa      2700
     aaataaactc acattcctaa tagatactgg tgcagatatc tcacttttaa aaataaactc      2760
     cgattctttc aaaattcaag aagacaaaat tataaacatc cagggcatag gccagggtgt      2820
     aataaaatct caaggaacaa cttcaataga acttcaatca acaaaatata ttattccaca      2880
     taaatttcat ttagtagact ccgatttttc aataccgtgt gatggaataa taggaattga      2940
     ttttattaaa aaattcaatt gccaattaga cttcaaacca agtaaagact ggtttataat      3000
     tagacctcaa aacttaaatt atcctattta tgttccaata acatatagcg ctggcaacaa      3060
     tacagttctt ctgccagcca gatcccaagt agtccgaaaa atagacatta attcagtaaa      3120
     cgattatata tttgttccaa atcaagaaat acataatgga atctatgttg ccaatacaat      3180
     agcagcatcc aaacatgtat acattcgcct tctaaataca actaatttcg accaactggt      3240
     caaagtaaac aaaatcgaat atgaaaattt aacagattac gatattctta acactaatcc      3300
     agaaaataga agcaaacaag tactttcaaa attgactaaa aattttccag aacaattcag      3360
     aaatcaatta acagaattat gcaccaagta tagtgacgtg ttcggactgg aaaccgaacc      3420
     aatagcgaca aataattttt ataaacaaac attaagactt aaagatgagg agcccattta      3480
     tatcaaaaac tacagaagcc cgcatagcca agttaatgaa atccagaaac aagtagggaa      3540
     attaatacac gacaaaatcg tagaaccgtc tgtatccgag tataacagcc cactcctgtt      3600
     agttccgaaa aaatcattac caaattcgga agaaaagaaa tggcgattag taatcgacta      3660
     tcgccaaatc aacaaaaagt tactttctga taaattcccg ctccccagaa ttgatgacat      3720
     tctagaccaa ctgggcagag ctaaatactt ttcatgcctt gacttaatgt caggttttca      3780
     ccaaattgaa cttgaagaaa attcaagaaa tataacatct ttttcaacaa gcaatggttc      3840
     atatcgcttc acgcgattac catttggtct taaaatagca cccaattcat ttcagagaat      3900
     gatgacaata gcattctcgg gtttagaacc ctctcaggca ttcctttata tggatgattt      3960
     aatggtgata ggatgttccg aaaaacacat gattaaaaac ttaactgatg tttttaatgt      4020
     atgtagaaaa tataacctaa agttgcatcc agaaaaatgc tcatttttca tgcatgaagt      4080
     aacattctta ggtcataagt gcactgacaa aggagtattg ccagatgaca agaaattcga      4140
     cgtcattaaa aattatcctg tccctcatga cgcggacagc gcgagacgat ttgtagcatt      4200
     ctgcaattat tatcgtcgat ttataaagaa cttcgccgat tattcacggc acataactag      4260
     attatgtaaa aagaatgttc cttttgaatg gtcaattgaa tgccaaaacg cattccaata      4320
     ccttaaagaa aagcttatgc accccacgtt attacaatat cctgattttc gcaaagaatt      4380
     ttgcattata acagatgcta gtaaacaagc ttgcggagcg gttctaactc agaaccgtga      4440
     cggaattcaa ctcccagtag cttatgcatc tcgttcattt acaaaagggg aaagcaataa      4500
     gagcacaaca gaacaggagt tagcggcaat tcattgggca attacccatt tcagaccata      4560
     catttatggc aaacactttg ttgttaaaac ggatcacaga ccactaacat atcttttttc      4620
     tatgaccaat cccagttcga aattaactcg catgcggcta gagcttgaag aatacgactt      4680
     cacagtagaa tacctaaagg gaaaagataa ttttgtagca gacgcacttt cacgaataac      4740
     tataaaagaa ctcaaagaca ttcaacataa agtcctgaaa gtcactacca ggcgacaaag      4800
     tagacaaaac aaagcctgta cagcagaaaa atatgaacta ttgccaaggc aaagtcataa      4860
     tgtacccaag cccaatgtac acgaagtcat tacaaatgat gaagtacgaa aagtagtgac      4920
     cttgcgcata acagaatcta aatgtttatt taaacatgga aataaagtta tcgcaagaat      4980
     ggaagttagc gatttatata ccaatggaat tctcgaccta ggtcagttct tccaaaggct      5040
     cgaaaaagag gccggtatat tacaaatcag ccaactcaag gtggcaccga gcgaaaagat      5100
     ctttgaatca gtttcaaaag attcttttaa aaatatgggc aataaaatat taaaatcttt      5160
     aagagtagcg ctactccagc cggtgaccca aataacagat gaaaaagagg tacaacaaat      5220
     attgtctaca taccatgacg atccaattca aggaggccac agtggcatta caagaacgct      5280
     agcaaaaata aaaagacact actactggaa aaatatgaca cgtcatataa aagagtacgt      5340
     acgtagatgt caaaaatgcc aaatatctaa aacaaagata cacacgaaaa ctcctttgac      5400
     tctcacagaa acacctgtga atgctttcga tatagtgata gtggatacag ttggtccgct      5460
     gcctaaatca gaaaatggaa atgaatatat agtcacatta atttgtgacc ttacaaaata      5520
     tctagtagcc attccaataa aaagcaaaag cgcaaattgt gtcgcaaagg ctatattcga      5580
     aaatttcata ctcaagttcg gtccaatgaa gacgttcatt tcggacatgg gaacagagta      5640
     taaaaaccag attttaactg atttatgcaa gtatatgaag atcgagaatc tcacctctac      5700
     tgcatatcat caccaaacat tagggacaat agaacgaagc catcgaacat ttaatgaata      5760
     cattcgttca tacatctctg cagacaaaac tgattgggat gtctggattc aatatttcac      5820
     ttattgcttc aacacgacac catcagcaac gcatgagtat tgtccatacg aactagtatt      5880
     tggcagacta ccaaaacagt tcatagattt aaataaaact aattacatag atcctatcta      5940
     caatctagat gactactcta aggaaataaa gtttagatta gaaatagcat acaaaagagc      6000
     tagaattatg ttagaaaaag ccaaggctta tagaaaatta gcatacgatg aaaaaacaaa      6060
     aaattttgaa ttaaaaatag gagataaagt acttatgaga aacgaagcag gtcacaaatt      6120
     ggacccagta tatttaggac catatatagt agaaaaaata gaagataatg ataacattta      6180
     cattaaagat agtaagaata agaagcaaaa ggtacacaaa gataggttaa aaatatatat      6240
     tcaatgaaac gtttcatgaa aaaaaaacat tggtctgatc aaccaaataa aaaaaaaatt      6300
     tttaatgaaa tatatattga aaaaaaaatg ggaataaaat aaaaaaaaaa aaaaatttta      6360
     aattcttctg gaaaagtcga atgaggattt aaagtgtaat ggagttaaag tgttaaagta      6420
     aatcaaatat attaaaatac aaaaaaaaat ttttttgttt atcaatgaac acaaatatta      6480
     aaaaaaaaaa aaagagatag aacacattct ttaatacact tattatacat tttttatata      6540
     cttataaaat aagacacaaa aaaaaaaaaa aacttattac tattaatttc aatattttta      6600
     taccgactct aacactcttc aaatgactac atatgtatat tacgtcattt ctttaaaaag      6660
     ggagg                                                                  6665
//
ID   Gypsy-12_DAzt-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-438
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 816-816 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 438 BP; 159 A; 90 C; 69 G; 120 T; 0 other;
     tgtagtatac ctaccctgcc agtaatacaa ttcaaagagt attacagtaa atctatacat        60
     tgtgacactc tgtcataaat atacaaatat ccaaaagacc actagcgcat atgtcatacg       120
     atcacccact tacatatgta catgccgatc gtagcgcgtg ggaatgctga gtgcatatgc       180
     aatacgatcc accacttatg tacatactgt tcgttgaact ttgcagctca agtggtcaag       240
     atatacacaa cgtatgtatg ccttctgcat acatacgtat acaccaatgt acttacatat       300
     aattataaga catagatata agtattgcat gtagcgggtt agctgaaccc agaacaaaga       360
     tataatattc agttctaata aagtaacaca gaggtccaga cgtgccttaa caaatattaa       420
     aaaagacatt caattaca                                                     438
//
ID   Gypsy-12_DBp-I repbase;    DNA;    INV; 3951 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3951
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 673-673 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..842
FT                 /product="Gypsy-12_DBp-I_1p"
FT                 /translation="MANNDAPQDDAEVFHDTVTRGVDAVINRVAVKIPPFW
FT                 PEHPELWLSQIEAQFVLAGITSDETKFNTILASIEAPVLARIADAIVNQPR
FT                 TGKYENLKSCILERFCESEQKKIQKLISETDLGDKRPTQLLNELNALAANK
FT                 VQESFLKALWLQRLPTQVQAILQASDASLANLAKLADKVMEVGDFHQVRTV
FT                 DAKSAPTSSAVSDDRLDRIEQQINALFRNRSRKNSLRTDRNSVIAGDMCWY
FT                 HSKFGNAAKKCRQPCSFSSEPKN"
FT   CDS           803..3937
FT                 /product="Gypsy-12_DBp-I_2p"
FT                 /note="peptidase, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSPTMLFFIRTKKLKQSSDSADKFEEDHNTIARLAIN
FT                 DNFSKTQFLIDTGADISVMPPCKNAKTMLTPKLLFAANGTKIQTYGEKRIA
FT                 LSLGLRRNFVWTFVIADVNCAIIGSDFLQHFDLLVDMKRRKLIDRATLLES
FT                 KCHAPQRKINAVLSYDTSNQYATLLHEYRDLATINSNRLPATSEVTHFIST
FT                 NGPPTHARARRLAPDKLKAAQSEFSYLIEKGICRPSNSNWSSPLHLVKKAN
FT                 GEWRPCGDYRALNNVTVPDRYPIPYILDVTSILYGKKIFSKIDLQKAYHQI
FT                 PVEPQDIPKTAIITPFGLFEFLFMTFGLRNAAQTFQRHINDVIQGLDFVFA
FT                 YIDDILIASESEAQHETHLRTILDRLRKAHLTVNFEKCQFGKTQLTFLGHD
FT                 ISQHGLKPSEAKVEAIRHFKKPLIAKDLKKFLGMINFYRPFIPRAAENQHI
FT                 LQTLIQGNKKNDKTPILWSTEADYAFTACKNELANATLLNYMAPNSQLTLT
FT                 TDASDDAMGAVVHQIINGQTQPLGFFSRKFTSTQKKYSTYDRELTAIYQAI
FT                 LHFKYALEGRNFVIFTDHKPLMYAFSQNSEKASPRRARQLDFISQFSTDIR
FT                 HISGEENNVADLLSRIDAIKHINFDEMALEQENDAELQSLLKSDAEKPISL
FT                 TKLSLSGSNKQLYCHVANNHTRPFVPKCLRQTVVEALHSLSHPGVKATNKL
FT                 VGKHYVWPRMAKDVAKIVRSCIPCQKAKIQRHTKSPLGEYTASDARFEHIN
FT                 IDIVGPLPSSNGYRYCLTCIDRFSRWPAAIPLVDITAQSVANALISGWFAQ
FT                 YGIPLHITTDLGRQFESTLFQELSKICGFKHLRTTAYHPQANGMIERWHRT
FT                 LKAALKCVDPINWSSSLHLILLGLRTTIKSDIGLSPAEMVYGTTLRVPGGF
FT                 FAPSTQKHTESEFTEALQKTMSQLPTTKPVHHHTPQEFVHPDLNHCTHVFV
FT                 RVDRVKTPLXANYEGPFEVVTKHDKYFTLKGHTKDNKVSIDRLKPAYIFKD
FT                 VPPPTQEQTTAPTAQTPEKVSRSGRQIRFPAKYLSQLEL"
XX
SQ   Sequence 3951 BP; 1187 A; 1133 C; 819 G; 810 T; 2 other;
     ttggtgaccc cgacgtgatc actatataca cgcgagtact ggtgcttaca atggcaaaca        60
     acgacgcccc acaagacgac gccgaggttt ttcacgatac cgttactcgc ggtgttgacg       120
     cagttatcaa ccgtgtagct gtgaaaatac cgccgttttg gcccgaacac ccagaattat       180
     ggctatcgca aatcgaagcc caattcgttc tggcgggaat aacctcggac gaaacgaaat       240
     ttaacacaat cctagcgtca atcgaagcac cggtgttggc ccgaattgcc gacgccatcg       300
     tcaaccaacc acgcacaggc aagtacgaaa atttgaaatc gtgcattctg gaacgcttct       360
     gcgaaagcga acaaaagaaa atccagaagt taatatcgga gaccgacctt ggtgacaagc       420
     gccccacgca actgctcaac gagttaaacg cactcgccgc aaacaaagtt caagaatctt       480
     tcttgaaagc actgtggctg cagcgcttac caacacaagt gcaagcgatc ttgcaagcat       540
     cggacgccag cctagcaaac ttagctaagt tggcagataa agtgatggaa gtcggtgatt       600
     ttcatcaggt acgcaccgtc gacgccaagt cggcgccaac cagcagcgcc gtttccgacg       660
     atcgtctaga ccgcatcgaa caacaaatca acgcgctgtt cagaaaccgt tctcgcaaga       720
     acagcttgcg aacggatcgc aacagcgtca tagctggaga catgtgttgg taccacagca       780
     aatttggcaa cgccgccaag aaatgtcgcc aaccatgctc tttttcatcc gaaccaaaaa       840
     actaaaacaa tcttcggatt cggcggacaa attcgaagaa gaccacaaca caattgcccg       900
     cctcgccatc aacgacaatt tctccaaaac acagtttctc atcgataccg gcgccgacat       960
     ttcagtgatg ccaccctgca aaaacgcaaa aactatgctc actccaaagc ttcttttcgc      1020
     cgccaatggc acgaaaatac aaacctatgg agaaaaacgc atagcattgt cactgggatt      1080
     gcgacgaaac ttcgtgtgga ctttcgtgat agctgacgtc aactgcgcta tcatcggatc      1140
     cgactttctt caacattttg acttactcgt cgatatgaaa cgacgcaaac tcatcgatcg      1200
     ggctacgctg ctggaatcaa aatgtcacgc gccccaacgt aaaatcaacg cggttttatc      1260
     ctacgacacg agtaaccaat acgctacatt gcttcacgaa tatcgcgatc tcgcaacgat      1320
     caactcgaac cggctgccag caacgtccga agtaacgcac ttcatctcga ccaacggccc      1380
     gcctactcac gcccgcgccc gacgactagc gcccgacaaa ctcaaagctg cacaatccga      1440
     gttctcctac ctcatcgaga aaggaatatg ccgtccctca aatagcaact ggtccagccc      1500
     tttgcacctg gtaaagaaag caaatggaga gtggcgtccg tgcggcgact accgagcact      1560
     gaacaacgta acagtgccgg atcgatatcc tattccgtac atactggatg taacgagcat      1620
     cttatacggt aagaagatat tttcgaaaat cgacctgcaa aaagcatatc accagattcc      1680
     tgtcgaacca caagatattc ccaaaacagc aattatcacg ccttttgggc tattcgaatt      1740
     tttgttcatg acgttcggtc tgcgcaacgc agcgcaaact tttcaacgtc acataaacga      1800
     cgtcatacaa ggcctcgact tcgtttttgc wtacatcgac gacattctga tcgcttcaga      1860
     atccgaggcg cagcacgaga cgcacctccg cacgatcctc gaccgccttc gaaaggcaca      1920
     tctcaccgta aactttgaga agtgccaatt cggtaagaca caacttacat tcctgggaca      1980
     cgacatcagt cagcacggct taaaaccatc cgaagccaaa gtggaagcca tacggcactt      2040
     taaaaaaccg cttatcgcta aagacctaaa aaagtttctg ggtatgatta atttctatag      2100
     gccgtttatc ccacgagcag ccgagaacca gcacatactc cagacgctga tccaaggcaa      2160
     taaaaagaac gacaaaaccc cgatactttg gtctacagaa gccgactacg cattcaccgc      2220
     ctgcaagaac gagcttgcaa acgctacgtt gttgaactac atggcaccaa actcacaatt      2280
     aacgctaacc accgatgcat ccgacgacgc tatgggtgcc gtagtacatc agatcatcaa      2340
     cgggcagaca caaccactgg gattcttctc caggaaattc acatcgacgc aaaagaagta      2400
     cagcacctac gatagagaac tgactgccat ctatcaggcc attttgcact tcaagtacgc      2460
     actggagggc aggaatttcg taattttcac cgaccacaag ccgcttatgt acgccttcag      2520
     tcaaaacagc gagaaagcat cacctcgacg cgctcggcaa ctggatttta tcagccaatt      2580
     cagcaccgat atccggcaca tctctggaga agaaaacaac gtggctgatc ttctctcacg      2640
     catcgatgcc atcaaacaca taaacttcga cgagatggca ctggaacagg aaaacgatgc      2700
     ggaactacaa tcgctactca agtctgacgc cgaaaaaccc atctcactaa caaaattgtc      2760
     tctttcaggc tcaaacaagc aattgtactg ccacgtcgcc aataaccata cacgtccgtt      2820
     tgtgcccaaa tgcctacgcc aaaccgtggt tgaggcccta cattcgctga gccatccggg      2880
     agttaaggca acaaacaagt tggtcggaaa acactacgtt tggccccgca tggcgaagga      2940
     tgtcgctaaa atcgtacgct cttgcatccc gtgccagaag gccaaaatcc aacgtcacac      3000
     caaatcgcca ctaggagagt acaccgccag cgacgcccgt ttcgaacaca taaatatcga      3060
     catagtcggc ccgctgcctt catcgaacgg ataccgatac tgcctcacgt gtatcgatcg      3120
     attctcaaga tggcccgcag caattccttt agtagacatc acagcacaat ctgtagccaa      3180
     cgcactgata tcgggctggt tcgctcagta cggtattcct ctccacatca caaccgatct      3240
     gggtcgacaa ttcgagtcta cattattcca agagctttcc aaaatttgtg gttttaagca      3300
     cctgcggacg acggcgtacc acccgcaagc caatggtatg atcgaacgct ggcacagaac      3360
     gttaaaagct gctttaaaat gcgtcgatcc aatcaactgg agcagttccc tgcatctaat      3420
     cctactcggc ctacgcacaa caatcaaaag cgacatcggg ctgagccctg ctgaaatggt      3480
     ttatggcacc acactacggg tgccaggcgg attttttgca ccgagcacac aaaaacacac      3540
     tgagtccgag ttcaccgagg ctcttcaaaa aaccatgtct caactgccaa ccactaagcc      3600
     agtgcaccat catacaccgc aagaatttgt gcacccggac ctaaaccatt gtacccacgt      3660
     cttcgtccga gtggatcgag tgaaaacccc gttggmagca aactacgagg gtcctttcga      3720
     agtggtaaca aaacacgaca aatattttac actcaagggc cacacaaagg acaacaaggt      3780
     ttccatcgat cgacttaaac cagcttacat cttcaaagac gtaccgcctc caacacagga      3840
     gcagacgaca gcgccaactg ctcagacacc cgagaaagtg tcaagatcag gacgacaaat      3900
     cagattccca gcaaagtatc tttcccaact ggaactctag gaggggggta c               3951
//
ID   Gypsy-12_DBp-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-219
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 674-674 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 219 BP; 64 A; 60 C; 34 G; 61 T; 0 other;
     tgtggcaacc cctttcagtt ctcgttctcg accaaactcg ataactcacg cgagtatcga        60
     tattacggga gtacatctcc aagagacaca ctctctcctc aataagcttc gtcagcttcg       120
     tccgccgcca ctgcagagtc tttgccgcat tcatctcccg atcatctttt tagttttaaa       180
     tataagtata tagtaaacaa taaacataag caaagcaaa                              219
//
ID   Gypsy-12_DEl-I repbase;    DNA;    INV; 4592 BP.
XX
AC   .
XX
DT   19-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DEl_;
KW   Gypsy-12_DEl-LTR; Gypsy-12_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4592
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 532-532 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1934-2476] - Reverse transcriptase
CC   Positions [3566-4051] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1232..4453
FT                 /product="Gypsy-12_DEl-I_1p"
FT                 /translation="MFDTGSAINLIQHSAIPYKNFSDILVPTNYYGVNGFK
FT                 IKTFGKIFVRLVFQNIEEEISFFVVPNNYVSTNVLLGRKFFEKFGIKLISK
FT                 DKVKEIVEVNLFKDSEPLKIVSIEPINRLQNSETYRDSDHLESSRDFEELC
FT                 IENEIVSDDSIPYIYSIDVFQDDESFDIDPKLSDEDRSELSEIIRLNYLCL
FT                 SNIPAIQHSYEMRLRLKSEEPVRTVPRRLSYQEKKEVDSKIDELLKKGFIR
FT                 ESNSPYSSAIVLVKKKSGEKRMCVDYRQLNKITVRDGYPLPLIDDCLERLE
FT                 GNKYFTLLDLKNGYHQVKVAESSVQYTAFVTPSGQYEYTRMPFGLMNAPAV
FT                 FMRFINFILQPLIREGNVVVYIDDIAIGSKTLNEHFKIVGRVLRILAEYRL
FT                 EIKINKCQFAYKSIEFLGYTLSEKGISPNYEHTSTIKHLPIPKDRHGMQKC
FT                 LGLFSYFRRFIPAYSKIAKPLQELTKAGVKYELSEDCIKTFEYLRDKLISS
FT                 PILSLYNPNRETELHCDASSEGFGGILLQKQDDNKFHPIAYFSQRATKLEA
FT                 RYESFKLETLAVVYSLRKFRIYLEGIPFNIVTDCNAVVLCLGKGRLNSSIA
FT                 RWALELANYNYTLKHRSGKYMTHVDSLSRYPSALNESFEYEPVVNIQNSDN
FT                 KDQIVSVIDSDDINLQLQITQNRDSIIVKLKEQLEQGSVKNFILSDGIVYR
FT                 LGENDIELLYVPAEMESHIIRRVHENLCHLGSEKCLKEIMRHYWFPNMKAK
FT                 IDAFIGNCLKCIMFTVPTHANNRTLHNIPKRPIPFDTLHVDHFGPLPSVIS
FT                 KKKHLLVIIDGFTKFVKLYPVNSTSTKEVNMCFSKYFQYYSRPRRVVSDRG
FT                 TCFTSLEFAKFLLENNIEHVKVATASPQANGQAERVNRTIKAMLAKITEPI
FT                 KHEDWSKLLDRAEYAINNSMHSTTKELPSVLLFGVQQRGCNIDALTEYLDD
FT                 RNDIPQSDLENVRKNSSDKIEQCQKRSKEYFQKNHKDHIEFEEGDFVVMRN
FT                 VDTTIGTNKKFVPKYKGPYIIKKILPNDRYVISDIENCQISQIPYEGIVEA
FT                 CRIRKWADWRNQCEINS"
XX
SQ   Sequence 4592 BP; 1632 A; 751 C; 937 G; 1272 T; 0 other;
     acttcagaag tgggatagtc accattaata cattcgccta catagccatt ttggctacct        60
     gagagcacac atttttttcc gcttttataa ttacgacgcc attctgaaat ggacaagaca       120
     caaattggtg agtggctaca agccaacgaa atcgagttcc ctgcaagtgc aactttaagg       180
     caactgcgca agctcgcttt ggatgccgga taccaagaag tggctgaaat cccagaaagc       240
     atattggagg aggagaactc caaaatggaa gtattaagcc aaggagccgc taccgaaggc       300
     atccagacat tggaagaaga agaagcactg cttgacgccg ccataagggt tgctgagaag       360
     aagaaaatat tggccggatt gatgaaaaac gtcgacaaaa cgacagatga cctccaatgg       420
     tgaagcacct cgtgagcccg ttttctgcca ctgaaaatga ggaagccctt aagtggattt       480
     tgaattttga gagagtctgc agagatatca acacatgtac aaattttcaa ctgcgctgcg       540
     tacgaatgtt gatgaaatcg ggtacagatg ccgacttgtt tgtgagtgtt gatcgatcga       600
     acacttacga cgaatttaag acaaatttca taaaaacatt cggtcgtgga agctcaactg       660
     ctgatattgt attgctactt aaggaaacca tgttcaaccc cgcgaagaac accgttatgg       720
     gatacatact tctgatggag gaaattgcta tgcgtgcaaa tatcgacgaa aaattgacag       780
     tgcagttcgt cattgatggt tttcgcgatc gttcagccaa tatcgctata ttgtacacag       840
     caacaacaat cgcacaattg aaggaattgg cttggaagta tggcaatcta aggaagaagt       900
     cacacaattt tcctcagcgc acggaaaacg ctggaggaga tcggaaaaca gtccgttgct       960
     acaattgctc tgcttatggg cactacgctt cgtcgtgcac tgcgccgaaa cgcgagaagg      1020
     gatcttgttt ccgttgtgga tccctccaac atatgctaaa ggattgtcag cagaagccag      1080
     caagtgatcc gagagtggtg ggagcagcca acaaccagcc gatacgagat gacgaagagg      1140
     agcctaatat gtttattccg attttaacca ggtaggagta tatttttaca ctgattgcca      1200
     acataagcct aacgtaactc ttctgtctgc catgttcgat acgggaagcg ccattaattt      1260
     aattcagcac tctgcgattc cttataaaaa ctttagcgat atactggtcc cgacgaatta      1320
     ctatggagtt aatggattta aaattaaaac attcggaaaa atttttgtca ggctcgtttt      1380
     tcaaaacata gaagaagaaa tttcattttt tgttgtaccc aataattacg tttcaactaa      1440
     tgttctgtta ggccgtaagt tttttgagaa atttggaata aaattgattt ctaaggataa      1500
     ggtaaaagaa atcgtagaag tgaatttatt taaggatagt gaaccattga aaatagtgag      1560
     tattgaacca ataaatagac ttcagaatag tgaaacatat agagacagtg accatttaga      1620
     aagcagtaga gattttgaag agttgtgtat agaaaatgaa atagttagtg acgacagcat      1680
     tccgtatata tatagtattg atgtatttca ggatgatgaa agttttgaca ttgacccgaa      1740
     gttaagtgat gaagatcgaa gcgaactcag tgaaataata agattgaatt acttatgttt      1800
     atctaacatc ccagcgatcc aacatagtta tgaaatgagg ctaagactta agtctgaaga      1860
     accggtacgc actgtaccaa gaagactttc gtatcaggag aagaaagaag tagattcaaa      1920
     aattgatgag ttattgaaaa aaggattcat aagagaaagc aattcaccct atagttccgc      1980
     tatcgttctt gttaagaaaa aatctggaga aaagcgtatg tgtgtagatt atagacaact      2040
     taataagata accgttcgag acggataccc ccttcccctc atagatgact gcttagagag      2100
     attagaagga aataagtatt ttacattgtt agatttgaaa aatggatacc atcaagtgaa      2160
     agtagcagaa agttccgtgc agtatacagc atttgtaaca ccttccggtc aatatgaata      2220
     tacaagaatg cctttcggac tcatgaatgc acccgcagta tttatgagat ttattaactt      2280
     tattctgcaa cctttgattc gcgaaggaaa tgtagtagtt tatatagacg atattgctat      2340
     aggctcgaaa acattgaacg aacattttaa gattgtagga agagtattac gaattttagc      2400
     agagtaccga ttggaaatta aaataaataa gtgccagttc gcttacaaaa gcattgaatt      2460
     tttagggtat acactgagtg aaaaaggaat aagtccgaat tatgagcaca catcaactat      2520
     taaacatctt ccgataccaa aagatcgcca tggaatgcag aaatgtttag gactattttc      2580
     ttactttagg aggtttattc cggcatactc aaaaatagca aagccattgc aagagctcac      2640
     aaaagcaggt gttaagtatg aacttagtga ggattgtata aaaacttttg aatatcttcg      2700
     tgacaaatta atttcatctc ccatattatc cttgtacaac ccaaatcgag agactgaatt      2760
     gcattgcgac gcaagtagcg agggatttgg aggaattttg ttgcaaaagc aggatgataa      2820
     taagtttcac ccaatagcct atttttcaca aagagcaaca aaactagaag ctagatatga      2880
     aagctttaaa ttggaaacat tagctgtagt ttactcatta cgaaaattca gaatatactt      2940
     agaaggaatt ccgtttaaca tagtaacaga ttgtaatgca gtagttttgt gcctagggaa      3000
     aggacgcctt aactcgagca ttgccagatg ggctttagaa ttggctaatt acaattatac      3060
     ccttaagcat cgtagtggaa aatatatgac tcatgttgat tcattgagta gatacccttc      3120
     agccttaaat gagagttttg aatatgaacc agtagtgaat atccaaaata gtgacaacaa      3180
     agatcaaata gtttcagtaa ttgacagtga cgacatcaac cttcagcttc agataacgca      3240
     aaatagagat agtattatag tgaaattgaa agaacaatta gaacaaggaa gtgtgaagaa      3300
     ctttatatta agcgatggaa ttgtttatag attaggtgag aatgatattg aattgctata      3360
     tgtaccagct gaaatggaat cccatataat taggagggtt catgaaaatt tatgtcattt      3420
     aggttccgag aagtgcttaa aagaaataat gagacactat tggtttccga acatgaaagc      3480
     taaaatagat gcatttattg gaaattgctt aaagtgtatc atgtttacgg tacccacaca      3540
     tgcgaataat cgaacacttc ataatatacc taagcgacca attccgtttg atacattaca      3600
     cgtagaccat tttggacctt taccttcagt tatatcgaaa aagaaacatt tgctagtaat      3660
     tattgatgga tttaccaaat ttgttaagtt gtatccagtg aattcaacga gtacaaaaga      3720
     agtcaacatg tgtttttcga aatattttca atactatagt cgaccacgta gagtcgtaag      3780
     tgatagaggt acatgtttta cgtcattaga atttgccaaa tttttattag aaaataatat      3840
     cgaacacgtt aaggtagcaa ctgcgtcacc tcaagcgaac ggacaggcgg agagagtaaa      3900
     taggacaata aaagcgatgc tggccaagat aactgaacca attaagcatg aagactggag      3960
     caaactttta gatagggccg aatatgccat taataattca atgcattcaa ctacaaagga      4020
     attaccctca gtattattat ttggagttca gcagagaggt tgcaatattg acgcattaac      4080
     agaatactta gatgatagaa atgatatacc acagagtgat ttagaaaatg tgcgtaagaa      4140
     ttcttcagat aaaatagaac agtgccagaa aaggagcaaa gaatattttc agaaaaatca      4200
     taaagatcat atagaatttg aggaaggcga ttttgttgta atgcgaaacg ttgacaccac      4260
     aattggtaca aacaaaaagt ttgtaccaaa gtacaaagga ccgtatatca ttaaaaagat      4320
     attgccaaac gatagatatg tcataagtga tattgaaaat tgtcaaatta gtcaaattcc      4380
     ctatgaagga attgtagaag catgtcggat acgaaaatgg gcagattggc gtaatcagtg      4440
     tgaaattaac tcctaatata tgctaaatta atttaattat atatcataac tagtcaaaat      4500
     tattactaac taaaacatat aatattaaga aaaactttta taatattaga aacccacgat      4560
     cgaggacgat ctaattgtca ggatggccga gc                                    4592
//
ID   Gypsy-12_DEl-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   19-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DEl_;
KW   Gypsy-12_DEl-I; Gypsy-12_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 533-533 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 263 BP; 114 A; 29 C; 49 G; 71 T; 0 other;
     tgttagcagt atattggaag ctgtatagat caagtggata taagatgtga ctatttaata        60
     atttaataat aataacactt atgttccatt ccgatgttcc aataatgtag aataagtagt       120
     aaggactatg tgaagatcgg aatagggtaa cacttgaatt aagagagaca attggaagca       180
     gacgtgaaaa agctaagctg aacagaaatt aaataaaata aaaactcaag aattgaaata       240
     aataatataa acctgcgtca aca                                               263
//
ID   Gypsy-12_DEu-I repbase;    DNA;    INV; 6765 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   04-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DEu_;
KW   Gypsy-12_DEu-LTR; Gypsy-12_DEu-I.
XX
NM   Gypsy-12_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6765
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 871-871 (2012).
XX
RN   [2]
RP   1-6765
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (04-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   97% identical to the consensus.
CC   [2]: Sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1579..2826
FT                 /product="Gypsy-12_DEu-I_1p"
FT                 /translation="MSSQWLRLEKFLANKKTEIFRSYKCVNKNTHIRKETL
FT                 EKHLGEIIINANKVRRAIAISRESLSTCHESQVTLIHNQIISIVRKALQKY
FT                 EIVFHIPENFKDPIEANITIAYTDVHDNSLADIFEEDNSEDFLGFESPLEV
FT                 SKTEIKVDIENINNIVEELEEATMAQTNVQFLKTAASLIPEFDGKAENLRS
FT                 FLDALELVDGIKESYENTAVQLIKTKLKGHARNLIGEENTIETIVAKLSKS
FT                 VKGESVEVLSAKLMNLQQKNKTANAYAKEVEDLTRALQGAYINDGLTLELA
FT                 SKYSTQSAVKAMTTNCSIDKVKLIMQAGTFTNMNEAVTKFVNSCTEATGQS
FT                 NAVLFYNNRYKQNNYQGNNIYRGRGNRGGGRGNYNNRGYYHNNTTPQGPTT
FT                 PQTAEITIIEMLGLHRKTRWTP"
FT   CDS           2798..4972
FT                 /product="Gypsy-12_DEu-I_2p"
FT                 /translation="DYTGKRGGPLDGSRGRRTVRIYKINISLSFFIKVKNE
FT                 KTNKYLTLLVDTGAEISLLKQCNQEYPELDSSKISNITGIGQGSIKSLGLA
FT                 LVELKTKNVIIPHDFQIVPPDFPIPCDGILGIDFIKEFNCILDFQNSQGSL
FT                 VLRPNNLTFPIQIPMHNSISDNTLLLPCRAEVIRTVKINSKEPSVFIPSQE
FT                 PFKGVLVPSTLVNTSCATVRFLNTNSETISLNVNTIKFESLENYDIQKPKE
FT                 RNPEYNNDRTKEVLKKLSFPSQFQTKLSELCTTYSDIFGLESEPISANNFY
FT                 KQQLRLSDKTPVYIKNYRNAESEKPEINKQVDKLIKDGIVEPSISEYNSPL
FT                 LLVPKKCLPNSTEKRWRLVVDYRQINKKLLADKFPLPRIEDILDQLGRAKY
FT                 FSCLDLMSGFHQIELSEKSRNLTSFSTNKGSFRYTRLPYGLKVAPNSFMRM
FT                 MTLAFSGLEPSQAFLYMDDLVVIGCSEQHMFNNLTKVFQLCRKFNLKLHPE
FT                 KCSFFMHEVTYLGHRCTDKGILPDENKYEAIKNYPVPKNSDEARRFVAFCN
FT                 YYRRFIKNFADYSRHITKLCKKNAHFEWNKDCNDAFNYLKEALMSPKLLQY
FT                 PDFNKEFCITTDASKYACGAVLTQEHGGAHLPIAYASRSFTKGESNKSTTE
FT                 QELAAIHWAIKYFRPYVYGRHFIVKTDHRPLIYLFSMKDPSSKLTRMRLDL
FT                 ENTILLRNTSRGKIIMWRTRCPELQ"
FT   CDS           5005..6471
FT                 /product="Gypsy-12_DEu-I_3p"
FT                 /translation="MKITTRSETRKNEDQKLEKEPLQKQEFQEPRVYEVVN
FT                 NNDARKYVKLKFVKHKCLFKRGKRIISQFKIDDLYSNGKIDLKQFFQRLEI
FT                 QAGMQNTKQFQLAPSALILTSVLLREFKEMGNRTLQKVQIALLSEVTIVDK
FT                 NNEKNIREILKTFHDDPIEGGHSGIRRTLLKIRQHYYWPNMTKVVTKYVKT
FT                 CQTCQQSKTTTHTRTPMTITETPTSAFDTVLIDTIGPLPRSEEGNEYAVTI
FT                 ICDLTKYLVTVPIPNKSANAVAKAIFENFILVYGPMKIILTDMGTEYKNSI
FT                 IGDLCKYMKIDKISSTAHHHQTLGTIERSHRTFNEYVRSYISSDKSDWDIW
FT                 LKYFTYCFNTTPSVTHNYCPYELVFGRPARKFINISKINQIDPIYNIDDYA
FT                 KEIKFRLESAYKRAKTMLEREKEKRKTLYDKDVNNFDLKIGDQVLLKNETG
FT                 HKLDRNYLGPFKVIDIDDRNNVKIIDNKKKQQIVSKDRLKPFFK"
XX
SQ   Sequence 6765 BP; 2703 A; 1208 C; 1157 G; 1693 T; 4 other;
     tggcgaccgt gacaggacsc gtgaaagtac aaaaatattt ttgaaacaaa taaaaagaaa        60
     aaagttaaag tgcaaaaaaa aaattattaa aaacatattt gaaggcctgc aaagctagag       120
     aaagcaacaa aaacaagcaa gaaaaaaaaa ttaagaaaaa taaataaaaa cacaagaagt       180
     taaagtgaaa aaatttaaga aactttaaaa actgcacaaa tgaagcttac acctaaaaaa       240
     ttgcaagagc aaatttaaac aagcgaaaac tgaaacaacc gaattcaaaa ggagagaaga       300
     accatttaca acgcgtggta ggcaggaccg cccactatgc caacgatctg ggattcaaaa       360
     aaacagtaat agtacggcaa gcaatatccg ctggctgtac caccgttgga agggtatgga       420
     tggtacaccc gtaccacaaa acgacaaacc ctcacttcaa gaggcactgg aggcgcagcc       480
     gaaggatgga ccaagacctt tgaccattgc cgaatataaa gcaaggcaag cagcgaggga       540
     gcgtcagcga gcccaggaca gggacgacca gttaacgcaa ataccaaaaa ctgcaccccc       600
     aaaaaataaa caaaggggcg gaaagcgagc taaactccta aaagagcgag cggtgatcat       660
     cggagacttg aaggaaggaa gacctcaaac taaccaggaa aaattgaaac ggcgtctaaa       720
     ggaattaaat tgccttctcc accgggagaa gaagaagcgg actaagtaat tagttcaccg       780
     cttgattttt tttagcactt gcaacgcgtt tacgcggggt gcgataatta agttcattaa       840
     caacctattt ttttcacata aactcatgta ctaacacaca acttttagtg taaacttaat       900
     ataagtaaag ctattgtaac ttgaattttg atgatatgta aactaaaagt tgtgcactta       960
     ttaaccacat catttatagg tttactaaat atcttatccc ttctaccttc ataaaaacct      1020
     taatcmaaat caaaaaaaaa aagtaaaaat gggtctgtgg agctcaaaag aggaagaagt      1080
     aaaagacaat acggcaaatg tcgtaaataa tgtcatagtt gacaacactc ctcttttcaa      1140
     ctccatgttt attttactaa taataataac ggtagctctg ttgatacaag tagtgcttaa      1200
     agtgcattac atctataaaa aatgtatcaa aagagaacat tcgtatagag agcatatgag      1260
     ccgagctcaa kacctcgaca aaatttgata aaacgattat atataaatat tctatatctt      1320
     tgcttacata aggaagttta taatcgatta atcatatttt aagcaaaatc taaagattaa      1380
     atacaagctt ttaaaactaa gggaccaatt ctatcatagc gacaccgaaa aatgtctata      1440
     acttaagatg cttcagacag ggtaattata aaacacccat agtttgttga cagaaatagg      1500
     catatcgctc aagtaaaagt tgaatctgtt accaacagca acgaaacact ggcagcataa      1560
     atattgctaa tcaggctaat gagtagccaa tggttaagac tagaaaaatt cttggctaat      1620
     aaaaagaccg agatttttag aagttataag tgtgttaaca aaaatacaca cataagaaaa      1680
     gaaacgctcg aaaaacattt gggcgaaatt atcattaacg ccaacaaagt aagaagagct      1740
     atagcaataa gtcgagaatc actatctact tgtcatgaaa gtcaagtaac acttattcat      1800
     aatcagatta tatctattgt aagaaaagct ctccaaaagt atgagattgt tttccatata      1860
     ccagagaact ttaaagaccc aatagaggca aatataacaa ttgcctacac agacgtccac      1920
     gataattcgt tggctgatat ttttgaggaa gataacagtg aagatttctt agggttcgaa      1980
     agcccactag aagtcagcaa aacagaaata aaggtggata tagaaaacat taataacata      2040
     gttgaggaat tggaagaggc aacaatggct caaaccaatg tccaattctt aaaaactgca      2100
     gcttcactca ttcctgagtt tgatggcaaa gcagaaaatc tacgaagctt cttagatgcc      2160
     ttggagcttg tagacggaat aaaagaatca tatgaaaaca cagcagtcca actaataaag      2220
     acaaaattaa aaggacatgc tcgcaacctc attggagagg aaaacacaat agaaacaatt      2280
     gtggcaaagc tgagtaaatc ggtcaaagga gagtcggttg aggttttatc agccaaactc      2340
     atgaatttgc agcaaaaaaa caaaacggca aatgcatatg ccaaagaagt agaagatctg      2400
     accagagcat tacaaggggc ttatataaac gatggcttaa cactagaatt agcatctaaa      2460
     tatagcaccc aaagtgctgt gaaagcaatg acaacaaact gctcaattga taaggtaaaa      2520
     cttatcatgc aggcgggaac gttcacaaat atgaacgaag ccgtaactaa atttgtcaat      2580
     agttgtaccg aagcgacagg gcaatcgaac gccgtattat tttataataa tcggtataaa      2640
     caaaacaatt accaaggaaa taacatatat cggggcagag gaaaccgtgg tggtggccgt      2700
     ggaaattaca ataaccgtgg ctattatcac aacaacacca caccgcaagg acccacaact      2760
     cctcaaaccg cggaaataac tataatagaa atgttaggat tacacaggaa aacgaggtgg      2820
     accccttgac ggtagcagag gaagaagaac agtaagaatc tataaaatca atattagcct      2880
     cagttttttc ataaaagtta aaaatgaaaa aaccaacaag tatttaacat tgttagtaga      2940
     tacgggagcc gagatttcat tactcaaaca atgtaatcaa gagtaccccg aattggacag      3000
     ttctaaaatt tcaaatataa cgggaatagg acaaggttct ataaaatcct tgggtttagc      3060
     gttagtggag cttaaaacaa aaaatgtcat tataccacat gactttcaaa tagtcccacc      3120
     tgattttccg attccatgcg atggcattct gggaatagac ttcattaaag aattcaactg      3180
     tatcttagat tttcaaaact cacaaggttc tttagtatta agaccgaaca acctgacttt      3240
     tccaatacaa atcccaatgc acaattcaat ttccgacaat actctcttac taccatgtag      3300
     agcagaagta attagaacag taaaaattaa ctcaaaagaa ccgtccgttt ttattccgag      3360
     tcaagaacca tttaaaggtg tgctggttcc gagcacattg gttaacacga gttgtgcaac      3420
     agtccgattt ctaaatacaa actctgaaac aattagttta aatgttaata caataaaatt      3480
     cgaatcgtta gaaaactatg atatacaaaa gcccaaggaa cgcaaccccg agtacaataa      3540
     tgatagaaca aaagaagtat taaaaaaact aagttttccc tctcaatttc aaacaaaatt      3600
     gtcagaactg tgtacaactt atagcgatat attcggcctt gaatcggaac cgatatcagc      3660
     taacaatttt tataaacaac aacttcgctt aagcgataaa acaccagtat atataaaaaa      3720
     ttatagaaat gcagaaagtg aaaagccaga aataaacaaa caggttgaca aattaataaa      3780
     ggatggtata gtcgaaccat caatttcaga atataacagt ccattattgt tggttccaaa      3840
     aaaatgccta ccaaattcaa cagaaaaacg atggcgacta gtggttgact atagacaaat      3900
     aaacaaaaaa ttattagctg acaaatttcc tttaccacgc atagaagata tattggatca      3960
     gttaggacgg gctaaatatt tttcttgctt ggaccttatg tccggatttc accaaataga      4020
     gttgtccgaa aagtccagaa accttacatc attctctaca aataaaggtt catttcgcta      4080
     tacgcgattg ccatacgggc taaaagtggc accaaattca ttcatgagaa tgatgaccct      4140
     agcattttcc ggtctagaac catcacaggc gttcttatac atggacgact tagtagtcat      4200
     aggatgctcc gaacaacata tgttcaacaa tttaacaaaa gtatttcagt tatgccgcaa      4260
     atttaaccta aaacttcatc cagaaaaatg ttcattcttt atgcacgaag ttacctatct      4320
     gggtcatagg tgcacagaca agggtatatt accagatgaa aataaatacg aagcaattaa      4380
     aaattaccca gtgcccaaaa actcagatga ggcgcgcaga ttcgtagcat tctgtaatta      4440
     ctatagaaga ttcatcaaaa attttgcaga ttattctaga catataacaa agctttgtaa      4500
     gaaaaatgcc cacttcgaat ggaacaagga ttgtaatgat gcatttaatt atttaaaaga      4560
     ggccttaatg agcccaaaac tcttacaata cccagatttc aacaaagaat tctgtataac      4620
     aacagatgct agcaaatacg cttgtggagc ggtacttacg caagaacatg gaggcgcgca      4680
     cttaccaatt gcatatgcgt ctcggtcatt cacaaaaggt gaatccaaca agtcaaccac      4740
     tgaacaagaa ttagcagcca tccactgggc cataaaatac ttcagaccat acgtttacgg      4800
     gagacatttt atagtaaaaa cagaccatcg accattaatt tatctatttt caatgaaaga      4860
     ccctagttca aaattaacaa gaatgaggct agatttagaa aatacgattt tactgcggaa      4920
     tacctcaagg ggaaaaataa ttatgtggcg gacgcgctgt ccagaattac aataaatgac      4980
     ctaaagtcaa taaacagaca ggtaatgaaa attacaacta ggtcagaaac acgtaaaaat      5040
     gaggatcaaa aattagaaaa ggaacccttg cagaagcaag agtttcaaga gcccagagtc      5100
     tacgaggttg tcaataacaa tgacgccaga aaatatgtga aacttaaatt cgtcaaacat      5160
     aagtgtttgt ttaaacgagg aaaacgaata atttcacaat tcaaaattga tgatttgtat      5220
     tctaatggga aaattgattt aaaacaattt ttccaaaggc ttgagataca ggccggaatg      5280
     caaaacacaa aacaatttca attggcaccc agcgcactga ttttaacgtc agtattacta      5340
     agagaattta aagaaatggg caaccgtaca ttacaaaaag tacaaatagc gctactttca      5400
     gaggtgacca tagtagacaa aaacaatgaa aaaaatataa gagaaatctt aaaaacattt      5460
     catgatgatc cgatcgaagg aggccattca ggaataagga gaacattatt aaaaataaga      5520
     caacattact attggccaaa catgacaaaa gtagttacta aatacgtgaa aacctgtcag      5580
     acctgtcaac aatcaaagac aaccactcac acaagaacac caatgacaat taccgagaca      5640
     cctacatcag cttttgacac ggtattaatt gataccattg gcccattacc gcgttcggag      5700
     gaaggaaacg aatacgcagt cacaattatt tgtgatttaa ctaaatactt agtaacagta      5760
     ccaattccga ataaaagcgc aaatgccgtg gcgaaagcaa tmtttgaaaa ctttatactc      5820
     gtttacggcc caatgaagat tattctaaca gacatgggca cagagtataa gaacagtata      5880
     ataggagact tatgcaaata tatgaagatt gacaaaattt catcgactgc acaccaccat      5940
     caaaccttag ggactattga acgcagtcac agaacgttta acgaatatgt ccgttcatat      6000
     atttcaagtg acaaaagtga ttgggacata tggttgaaat attttaccta ctgttttaac      6060
     actacaccat cagtcacgca taattattgt ccgtacgaat tagtttttgg aagaccggct      6120
     agaaaattta taaatatttc taaaataaat caaatagatc ctatatataa catagatgat      6180
     tatgctaagg aaattaagtt taggttagaa tcagcgtaca aacgcgcaaa aacaatgcta      6240
     gaaagggaaa aagaaaagcg aaaaacgcta tacgacaaag acgtaaataa cttcgaccta      6300
     aaaatcggag accaggtttt actcaagaat gaaaccggtc acaaattaga tcgaaattat      6360
     ttaggaccat ttaaggtcat agatatagac gataggaata atgttaaaat catagacaat      6420
     aagaaaaaac aacagatagt aagcaaagat aggttaaaac cattcttcaa ataatacaac      6480
     ataattaaaa aaatatatat atatatatgt atatgtaaga acatacaaag ttctcttata      6540
     tcgtttagtt aatccttaat ttcttttaac tttatattat tttaacacaa aaaaaaataa      6600
     ttaaaaataa gaccccacat aaaaaccatt taagacccaa catatatcca tcatcatatc      6660
     attccataca atttcattca attttatttt gattttatat tcattctttt acaaatattt      6720
     tagaatgact tcataaatat acgtcattca ttttaacggg ggagg                      6765
//
ID   Gypsy-12_DEu-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   04-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DEu_;
KW   Gypsy-12_DEu-LTR; Gypsy-12_DEu-I.
XX
NM   Gypsy-12_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-349
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 872-872 (2012).
XX
RN   [2]
RP   1-349
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (04-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   [2]: Sequence updated.
XX
SQ   Sequence 349 BP; 109 A; 77 C; 57 G; 106 T; 0 other;
     tgtagcgagc ggagtatata attttaattc tattttaatt acataaatac atacattgta        60
     tgtacacata caaactaaca tatttcttct caagtgtccg gccaacgagc cggccctaaa       120
     atgctgatca tgcattccca cggtgacgac tggctctaca ccaactaaca cttatagccg       180
     gccgtctcat ggtatatgta tacataagac aaatatgcca atgcatgtat atactcctat       240
     cgctgctcgc ttcagttttt agcctctaag aagaaatgtt tgcaaataaa agttcagttg       300
     tgaacaccac tcaagaagac aatgtcgtat gatttctcgt gtctttaca                   349
//
ID   Gypsy-12_DFi-I repbase;    DNA;    INV; 4118 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DFi_;
KW   Gypsy-12_DFi-LTR; Gypsy-12_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4118
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 911-911 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..4117
FT                 /product="Gypsy-12_DFi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSDEEEGGRKSGVITRAQTKKNQAFSLDIVEEEQQQE
FT                 ESSDLESEFSTSELKMSEINNQSLQQIIELLSLKIKADEINQRSQNEPKIT
FT                 AEXFSQIVPNFDGETIPVEQWFSNFEQNADAYELSEKQRYVQARGKMTKMA
FT                 KLFLESVLVSNYSQLKSALTAEFKRTLRSADIHAKLAERKKKIEENFHEYI
FT                 LNMKKIAAMGQVDEESVIGYIVDGLDIKNEYKFNMYDCKSYQELKDKFDVY
FT                 ERKCGKEREERRYTKGQKIVSTDKKVARCFNCGSTEHMRKDCNTQTKCFKC
FT                 DGVGHISTNCPQAVKKVNLIKDTKRCKEILLNGIKVAGLVDTGSDVSIVGQ
FT                 SIFKCLENVDIQSSNSTLRGLGNRKVEPLGAFIGTVLVDGNVAEQLFLVVP
FT                 DGNMENDVLLGFDFVSKFSVSLNEGGFTFQKSSAEPVSAEKNELSIYNIVD
FT                 AKPDIDVPHQFQPLIKSMIEEYKPANPSSISPVQMKIIPDEQMKSFRHQPS
FT                 RYSPLECDAIRKQIDEWLLEGVIRKSTSNFASRVVLVKKRNGAYRTCVDFR
FT                 QLNSMVLRDCFPVPLIDDVLEXLQKAAVFIVMDLENSFLHVPIEESSRKFT
FT                 AFITREGLFEFCRAPYGFCNSPAVFNRFVNSVFQELITNDVMQMYVDDIII
FT                 YGQTNDECIAKLKTVLHEAAKYDLKIKWEKCHFLQSKVWPGEEKTKAVKKF
FT                 AYPKNIKGVQSFLGLTGFFRKFVKGYANIARPLTDLLKKGAEFKFEASEKN
FT                 AMNQLKDILSTEPVLRLYRREAQTELHTDASKDGFGAVLMQKVDEELHPVA
FT                 FWSKRTSEADAKRHSYILEVKAAYLALNKFRHYLLGISFKLVTDCAAFSMT
FT                 VKKKDVPREVAQWILQLQDFEFQVEHRTADRMKHVDSLSRYPQDVFNITSE
FT                 ISARIEKAQQKDEFIESIIELLKSRPYKDFKLKGNILFKHVDGNDLLVVPK
FT                 SMEHEIISGAHNMGHFSMQKTLHSLRQQFWISHIESKVAKIIKSCIKCIIC
FT                 NKKLGKQEGQLYCIGKGDYPLHTLHIDHLGPMDATSKQYKFIFAVVDAFSK
FT                 FVWLFTTKTTNCEEVLRSLTDWSAVFGYPSRIVSDRGVAFTSNLFTNFVKE
FT                 NGIEHVWTTTGVARGNGQIERVNRCIISMISKLSAEDTSKWYKFVAQVQRA
FT                 INSHVHCSTKKTPFQLMFGVKMQNKVSDNLVAILEQELLNDFDNERAKERE
FT                 AAKIEIQKAQANYKANYDKHRKIENIYKEGDLVAIKRTQFVAGKKLASTFL
FT                 GPYEVTKVKRNGRYNVRKAAQVEGPNITTTSSDNMKLWKYANWNEDCLSSG
FT                 TDSSSQDDR"
XX
SQ   Sequence 4118 BP; 1371 A; 810 C; 934 G; 1000 T; 3 other;
     ttaaaagaac acgtgaaaca caatattata atattaatat cttacttaat aaaaactawa        60
     ttacatttgg gggctcaacc taaaagccaa aaaaaaaaaa ttgcgcagtt gcgaaatttg       120
     tgaaaaaatt tcatcatcaa gtgaatacga gagtatgagc gacgaagaag aaggaggacg       180
     aaagagtggt gtcataacac gagcgcaaac taagaagaat caagcattta gccttgatat       240
     cgtcgaagag gaacagcaac aagaagaatc gagtgacctg gaaagcgaat tttccacaag       300
     tgagctgaaa atgtccgaga tcaacaacca gagcttgcaa caaataattg agttgctgtc       360
     tcttaaaatc aaagcggatg aaataaatca aagatcgcaa aatgaaccaa agattactgc       420
     agaaawtttt tctcaaattg tgccaaactt tgacggtgaa acaattccag tggagcagtg       480
     gttctcaaac tttgaacaaa atgcggacgc ctatgagtta agcgaaaaac agagatacgt       540
     acaggcgcga gggaaaatga cgaaaatggc aaaactgttc ctagagtcgg ttttggttag       600
     caattactct caacttaaaa gtgctctcac tgctgaattc aaacgcacgc taagaagtgc       660
     cgacattcat gcaaagttgg cagagagaaa gaaaaagatc gaagaaaact ttcatgaata       720
     tattttgaac atgaagaaga tagctgctat gggtcaggtg gatgaggagt cggtgattgg       780
     ttatatagtg gacggattgg acataaagaa tgaatataag ttcaatatgt atgactgcaa       840
     atcttaccag gaattaaaag ataaatttga cgtgtatgaa cgcaagtgtg gaaaggaaag       900
     agaagaacga cgctacacta aaggtcaaaa aatcgtgtcc accgacaaaa aggttgccag       960
     atgctttaac tgcggatcaa cagagcacat gcgaaaagat tgcaacacgc agacaaagtg      1020
     tttcaaatgc gatggtgttg ggcatatatc taccaattgt ccacaggcag tcaagaaagt      1080
     aaaccttatc aaggatacca aacgctgtaa ggaaatattg ctcaacggaa ttaaagtagc      1140
     cggtcttgtt gacactggct cggatgtttc aattgtcggc cagtccattt tcaaatgttt      1200
     ggaaaacgtg gatatccaga gtagcaattc aactcttcgt ggacttggaa atcgcaaggt      1260
     agaacctttg ggcgctttca tagggacggt tctcgtcgat ggaaacgtag ctgagcagct      1320
     tttccttgtt gtacccgatg gaaacatgga aaacgacgtg ctacttggtt ttgactttgt      1380
     atcaaaattc agcgtttctc ttaacgaggg tggattcaca ttccagaagt cgtcagcgga      1440
     gccagttagc gctgaaaaaa acgagctaag tatttacaat atagttgacg ctaaacctga      1500
     tatcgatgtt ccccatcagt tccagcctct catcaagtcg atgattgagg aatacaagcc      1560
     ggcaaaccca tcttcgataa gtcctgttca gatgaagata atacccgatg agcaaatgaa      1620
     gtccttccga caccagccaa gtcgttattc tcctctggag tgcgatgcga tcaggaagca      1680
     gatcgatgag tggctattag agggagtcat ccgaaagtca acctctaact ttgcaagcag      1740
     agtcgtgttg gtgaagaaaa ggaatggagc atacagaacc tgcgtggact ttcgccaact      1800
     aaacagcatg gtattaagag actgctttcc tgttccactg atcgatgacg ttttggaaan      1860
     actacaaaaa gcagcagttt tcattgtcat ggatttggaa aatagctttc ttcacgtgcc      1920
     catcgaggaa tccagcagga aatttaccgc attcatcacc agagaggggt tgtttgaatt      1980
     ttgccgagcg ccatacggtt tctgcaactc tccagccgtg ttcaatcgat ttgttaacag      2040
     cgtgtttcag gagttgatca ctaacgatgt tatgcaaatg tacgttgatg atatcatcat      2100
     atacggacag accaacgatg aatgcattgc caagctgaaa acggtgctac acgaagctgc      2160
     taaatacgac ttaaagataa aatgggaaaa atgtcatttt cttcaaagca aagtttggcc      2220
     aggagaagaa aaaactaaag ccgttaaaaa atttgcctat ccgaaaaaca taaagggcgt      2280
     tcagtctttt ttgggtctca caggattttt ccgaaagttt gtcaagggct atgccaacat      2340
     cgctcgaccg ttgacggacc ttttaaagaa aggcgcagag tttaaattcg aggcttcgga      2400
     aaaaaatgca atgaaccagc tgaaggatat tctgtctaca gaaccagtct tacgtctata      2460
     ccgcagagag gcccaaacag agctccacac agacgcttca aaagatggtt tcggtgctgt      2520
     gcttatgcag aaggttgacg aagagctgca tccagtcgct ttttggagca agaggacatc      2580
     cgaagcagat gccaaacgac acagctacat actggaagta aaagctgcgt acctcgctct      2640
     taacaagttt cggcattacc tcttaggtat ttcatttaaa ttggtcacag attgcgccgc      2700
     cttctctatg acagtgaaga aaaaggacgt gccccgcgaa gtcgctcagt ggatactgca      2760
     gttacaagac ttcgagttcc aagtagaaca tcgaactgcc gatagaatga agcatgttga      2820
     cagcctcagc cgctatcctc aagacgtctt caacatcacc tcggagattt ctgctcgcat      2880
     cgagaaagct cagcaaaagg atgaattcat cgagtctatt atagaacttt tgaaatctcg      2940
     cccctataaa gatttcaaac tgaaaggtaa tattttgttc aagcatgtgg atggaaatga      3000
     tttgctggtc gtgccaaaat caatggaaca cgaaataata tctggtgcac ataacatggg      3060
     acatttttcg atgcaaaaga cgttacactc attgcgccaa cagttttgga tctcgcacat      3120
     agaaagcaag gttgcaaaaa ttattaagtc ttgcataaag tgcattatat gcaacaaaaa      3180
     gctgggaaaa caggaaggtc agttgtactg cattgggaaa ggagactacc cactgcacac      3240
     gctccatata gatcacttgg gacctatgga tgcaaccagc aaacagtaca agtttatttt      3300
     tgccgttgtt gatgctttca gcaaatttgt atggctgttc acaactaaaa ccactaactg      3360
     cgaggaagtc ttaagaagtc ttacagactg gtcagctgtt ttcgggtatc catcccgcat      3420
     tgttagcgac agaggagttg ctttcacctc caacctattc accaactttg tgaaggaaaa      3480
     cggaattgaa catgtgtgga cgacgactgg tgtggctcgc ggtaatggac agattgaacg      3540
     ggtgaacaga tgcattattt ccatgatctc gaaactgtcc gctgaggata cctctaagtg      3600
     gtataagttt gtggcgcaag tccagcgcgc cattaactca catgttcact gctcgactaa      3660
     gaaaacaccg tttcaactaa tgttcggggt taaaatgcag aacaaagtca gcgataatct      3720
     ggtggcaatt ctggaacaag agttgttgaa tgacttcgac aacgaaagag caaaagaacg      3780
     cgaagcagcc aaaatagaga tccagaaggc acaggcaaat tataaagcca actatgataa      3840
     acacaggaag atagaaaaca tctacaaaga aggcgattta gtcgcaataa aacgtaccca      3900
     attcgttgct gggaaaaaac tcgccagtac ctttcttgga ccgtacgaag tcacaaaggt      3960
     taaaagaaat ggccggtaca atgttaggaa agctgctcaa gtggaagggc caaatattac      4020
     aacaacgagc tcagacaata tgaaattatg gaaatacgcc aattggaatg aggattgctt      4080
     gtcgtctggg acagactcca gtagccagga tgaccgaa                              4118
//
ID   Gypsy-12_DFi-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DFi_;
KW   Gypsy-12_DFi-I; Gypsy-12_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-173
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 912-912 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 173 BP; 64 A; 28 C; 48 G; 31 T; 2 other;
     tgtaaggaag agwtggttgc gatcaggttg gcaaccccac acagcggaaa ggagaacgga        60
     taatgggaga agagaaccac acagtcaagt cgaagtcgtc aagttgtcaa gtcgtaaagt       120
     cgtmaagtcg aaaaaagttg tcggtcgcaa aaagttgtca aattaaaaga aca              173
//
ID   Gypsy-12_DHyd-I repbase;    DNA;    INV; 6711 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6711
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2398-2398 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1406..2719
FT                 /product="Gypsy-12_DHyd-I_1p"
FT                 /translation="MECEQLSLHIRKIKETFGKSYKCLGQNRAIQQDTLNK
FT                 HAKILVDSFNDVRILVHDNRETINKTNWSKISKLLIKLRLQLIIVKEKYEL
FT                 DIFIPSILNTPLELDSDKKQKSIEIDSVEDEDSESESETELKERDLNDLTI
FT                 PALITLSNQDNELGQEEETISNTSIKESKENIMTDISAQRAYIKDISNAIP
FT                 EFNGQRIHLQRFVRALKLVNLTKGIFEEIAVEVIKSKIIGSTLYKVQDETT
FT                 INAIIKKLQDTIIGETSDVVKAKLSKTMQKGKTAEKFTTEIDNLRKLLEAS
FT                 YIDEGLPAEHADKFSTKEAIDAMVKNCEYGKLKTILEAGNFKTMNEAVTKY
FT                 IQCSTEMTGNPNSVLYAQRGRGNYNNKNSYRGGAMVAVIIIITIAITAKTT
FT                 ITRTITIKIITTEEITIIEITEVTIEEITSRTAVITKITTTTLG"
FT   CDS           2718..6473
FT                 /product="Gypsy-12_DHyd-I_2p"
FT                 /translation="GSPKRFGKLPTTFRYSAVKNIKIHTINLSLNIYANFI
FT                 NVTTGKELVFLIDTGADISILKENSDVFQYIQTDNIISIQGISQEVTKSKG
FT                 LTSIEIQTSKYIIPHDFHIVNSHFAIPCDGILGIDFIRKYNCQLDFKPSED
FT                 WLIIRPNNLKYPIYVPITHSSGNNSIILPARSQVVRKIEIASVEDSVFIPN
FT                 QEIQHGIYIANTIATIQNAFIRMLNTTNTDQLISINNLKYEPLSNYDIVNT
FT                 DQLISINNLKYEPLSNYDVVKTNPEKREKSVLAQLSKNFPPQFNNQLTSLC
FT                 SKYSDVFGLETESMTTNNFYKQKLRLKDDEPIYIKNYRSPHSQKDEIQKQV
FT                 QKLINDKIVEPSVSAYNSPLLLVPKKSLPNSEEKKWRLVIDYRQINKKLLS
FT                 DKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEEKSRDITSFSTNNGS
FT                 YRFTRLPFGLKIAPNSFQRMMTIAFSGLEPSQAFLYMDDLIVIGCSEKQMI
FT                 KNLTDVFEKCRKHNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVI
FT                 QNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKDXKFEWTAE
FT                 CQKAFEHLKAELMNPTLLQYPDISNEFCIITDASKQACGAVLTQNKNGLQL
FT                 PVAYASRSFTKGESNKSTTEQELAAIHWAITHFRPYIYGRHFTVKTDHRAL
FT                 TYLFSMVNPSSKLTRMRLELEEYNFTVEYLKGKDNYVADALSRITIKDLKN
FT                 IHINNKILKVTTRNQSKQLNSCAGKEKEKEDLHKQSLNASQPNVYEVIVNE
FT                 EVRKVVTLRRTDSLCLLKHGKKVIARIDVSDMYTNEIFDLGQFFQRLETEA
FT                 GILNISQLKVAPSEKIFEVISIDSFKSMGNKILKSLRVALLKPVTQLSNDN
FT                 NKEKEAILFTYHDDPIQGGHXGIARTIAKIKRHYYWKNMSRDISNYVRKCQ
FT                 KCQKSKITKHTKTPLTITETPQLAFDRVIVDTIGPLPKSEQGNEYAVTLIC
FT                 DLTKYLVAIPIKDKNAKTVSQAIFEDFILKYGPMKTFITDMGTEYKNSIIE
FT                 ELCKNLNIKNITSTAHHHQTVGTVERSHRTLNEFIRSYISVDKTDWDVWLQ
FT                 YFVYCFNTTPSMAHDYCPYELVFGKSSNLPKHFNTVDNIKPLYNIEDYAKE
FT                 SRYRLEQAYKRARIMLEKHKEKNKKYYDKKLINFELKIGDNVLLKNETGHK
FT                 LDFKYTGPYKVESVNDNDNIIISNNKNKQQIVHKDRLKIFIS"
XX
SQ   Sequence 6711 BP; 2831 A; 1140 C; 1048 G; 1685 T; 7 other;
     tggcgaccgt gacagaacac gaacctacaa taaaattaca ccgaagattg caggaccaaa        60
     aactacaata aaattacaac gcagcgcagg gactccgcaa caacaacaac acaatacggc       120
     agcaacatga aggaaaatga aatctgagtg agtagtgaga gtatgacacg cagaggggga       180
     gtgcaaaaca aaataatgaa gagaatagca cacgtaaagt ggctattata ttcaagcacc       240
     acacctcccc catgggcaac agcccaagaa gaggttgact ttttaaaatc gaacttcaaa       300
     acaggaaagc caaaaacaaa tactcctact cactcaaata taaaaatgta aatcaaatta       360
     acaagattac tccacccaaa gagaagaagc tgcccaagag gaaaccggag tgcccagcag       420
     actgcgaggg accaatgtgt gaaagtgtga aagacaggcc gtcttttaca catacgaggg       480
     agcatcagcg agccaaccgg cgtcgaccag ctgatgcagc aaaggaaatt cagcagaggc       540
     gaacaacaat tttattttaa ttaaatatat atgtataaat ataggtaaaa tattgtaaaa       600
     tcgagcggaa ccttttctgc ccgatagtag tatggcccgt aaagccgtac aacaaatagg       660
     taggaagatc actgcgatga tcgaataggg aaaatagact aaataacaat tgacaataat       720
     tcaagaaaaa cacatactac atacgtatgt tcgataatag cataagaaaa tttgatgata       780
     tatcaattat acccacaatg gggttaatca aaacaaaatc agtggactcc actgcgaatg       840
     taataaataa aatcgaatca tctagtactg atataagatt aacaaatata ctattactaa       900
     taattgtctt aatattgtgt gcatatattg tatataaggc atacctttta cacaataaaa       960
     gtgtaacgaa aagagcacta agcaaagcaa atgatctaga caagatctga tatgatatgc      1020
     ccacatacaa ttttaacaaa agtatattta aataaaaaat ataataaaga aatgaataca      1080
     gaaaaatgca tacgcattct acttgaaagc gaaccagatt tcgaagatag gcccatacta      1140
     atatatcatt tagaatatga atatatacta atatmtcatt tagaatatga atatatggaa      1200
     aggacagctt agattgttcc ccactttcgc actgtacaag cacgcaaaag ggaataatac      1260
     taagtaatgt aaaaaattgc agggtatttt ctgaagtaga gaaaaattaa atactagggc      1320
     aaataaatat aataaaagtt tcatacaaac cataagaaaa caaaaatgta cttccaaata      1380
     tatatatatg taatgaatat taagaatgga atgcgagcaa cttagtctcc atatccgtaa      1440
     aataaaagaa acatttggta aatcatacaa atgtttagga caaaataggg cgatacaaca      1500
     agacacttta aacaaacatg caaaaattct cgtcgattca ttcaacgacg ttagaatatt      1560
     agtgcatgat aatagggaaa caataaataa aacgaactgg tcaaaaattt caaaactatt      1620
     gatcaagtta cgtttgcagt taataattgt caaagaaaag tatgaattag atatattcat      1680
     accatcaatt ctgaacaccc ctctagaact agactcagat aaaaaacaaa aatcaataga      1740
     gatagattct gtggaagatg aagattctga atctgaatct gaaactgaat taaaagaaag      1800
     agatctaaac gatcttacaa ttcccgcact aataacatta tcgaatcaag ataatgaatt      1860
     aggacaggaa gaagaaacta tctctaatac aagcataaaa gaatccaaag aaaacatcat      1920
     gacggacata agtgcccaaa gggcatatat aaaagacatt tcgaatgcca ttccggaatt      1980
     caacggacaa agaatacatc ttcaaagatt cgtaagagct ttgaagttag ttaatttgac      2040
     aaaaggcata ttcgaagaaa tagctgttga agtcataaaa tcaaaaatta ttggctcaac      2100
     actatacaaa gtccaagatg aaacgacaat taatgcaata attaagaaat tgcaagatac      2160
     tataattggt gaaacatccg atgtagtaaa agcaaaattg tctaaaacaa tgcaaaaagg      2220
     gaaaactgcc gaaaaattca cgactgaaat tgacaatttg cgaaagcttt tggaggcttc      2280
     gtatattgat gaaggtctac cagcagaaca tgctgataag ttcagtacca aggaagccat      2340
     tgacgcaatg gttaaaaatt gcgaatatgg aaaattaaaa actatccttg aggcaggaaa      2400
     tttcaaaact atgaatgaag ccgtcactaa gtacattcag tgtagtactg agatgacagg      2460
     caatcccaat tcggtattgt atgcccagag aggccgtggt aattataata acaaaaatag      2520
     ttatcgcgga ggggcaatgg tcgcggttat tataattata acaatcgcaa taacggccaa      2580
     aacaacaatt accagaacaa taactatcaa aataataact acagaggaaa taacaataat      2640
     agaaataaca gaggtaacta tagaagaaat aaccagcaga acggcggtta taaccaaaat      2700
     aacaacaaca acgttagggt agcccaaaac gcttcgggaa actcccaaca acctttagat      2760
     actcagcagt aaaaaatata aaaattcaca ccatcaatct cagtctgaat atatatgcaa      2820
     acttcataaa tgtaacaaca gggaaagaat tagtcttctt aatagacaca ggtgcagaca      2880
     tatcaatatt aaaagaaaat tcagatgtat ttcaatacat tcaaactgat aacataatta      2940
     gtatacaggg aataagtcaa gaagtaacca aatcaaaagg acttacttct atagaaattc      3000
     aaacttcaaa atatataatt ccacacgatt ttcacatcgt aaactcacat ttcgctattc      3060
     catgtgatgg aatactaggt atcgatttca taagaaaata caactgtcaa ttagatttca      3120
     aaccgtccga agactggcta ataattagac caaataattt aaaatatccc atttatgttc      3180
     caataacaca cagttctgga aacaactcca taattctgcc agcaagatca caagtagtcc      3240
     gaaaaataga aatagcctca gtagaagaca gtgtatttat tccaaaccag gaaatacagc      3300
     atggtattta tatagcaaat accatagcaa caatccaaaa tgcattcata agaatgctta      3360
     atacaactaa tacggatcaa ttaatcagca taaataattt aaaatatgaa ccactttcaa      3420
     actacgatat agttaataca gatcaattaa tcagcataaa taatttaaaa tatgaaccac      3480
     tttcaaacta cgatgtagtt aaaacaaatc ccgaaaagag agaaaaatcc gtattagccc      3540
     agctatcaaa aaattttcca ccacaattta ataatcaatt aacgtcatta tgttccaaat      3600
     acagcgatgt attcggacta gaaactgaat caatgaccac aaataacttt tacaaacaga      3660
     aactgagact gaaggatgat gaaccaatat atattaaaaa ttatagaagt cctcatagtc      3720
     aaaaggacga aattcaaaaa caagtccaaa aattaattaa cgataaaata gtcgaaccat      3780
     cagtatctgc ttataatagc ccactgttat tagtaccgaa aaaatcactt ccaaattccg      3840
     aagagaaaaa atggcgatta gtaattgact atcgtcaaat taataaaaaa ctgttgtctg      3900
     ataaatttcc actccctaga attgatgata ttttagatca actaggtaga gcaaaatact      3960
     tttcatgcct tgacttaatg tcgggttttc atcaaattga actcgaagaa aaatcacgcg      4020
     atattacttc tttttcaaca aacaatggtt catatcgctt cacgcgatta ccattcggtt      4080
     taaaaatagc gccaaattcg tttcagagaa tgatgactat agccttctct ggacttgaac      4140
     cttctcaagc attcctttac atggatgact taatagtcat tggttgttcc gaaaaacaga      4200
     tgatcaaaaa cttaactgat gtttttgaga aatgtaggaa acataaccta aagttacatc      4260
     ccgaaaaatg ttcattcttt atgcatgaag tcactttcct aggacataaa tgcacagata      4320
     aaggaatctt acccgacgac aaaaaatacg acgtcattca aaattatcca gtcccacatg      4380
     atgcggacag cgctagaaga tttgttgcat tctgtaacta ctacagaaga ttcataaaaa      4440
     attttgctga ctattctcgt cacataacga gattatgtaa aaaagatkta aaattcgaat      4500
     ggacagcgga atgccaaaaa gccttcgaac atctgaaagc agaattaatg aatccaacac      4560
     ttttacagta tccagatatc agcaatgaat tttgcattat aacagatgct agtaaacaag      4620
     catgtggagc agttcttact cagaacaaaa atggacttca gctcccagta gcatacgcat      4680
     ctagatcatt tacaaaaggc gaaagtaata aaagtacaac agaacaggaa ttagcagcta      4740
     ttcactgggc aataacgcat ttcagaccat atatttatgg tagacacttc actgtcaaaa      4800
     cagatcacag agcacttaca tacctattct caatggtaaa tcctagttcc aaacttacca      4860
     gaatgagact tgaactagag gaatataatt ttacagtcga atatctaaag ggaaaagaca      4920
     attacgtagc cgacgcgcta tctagaataa caatcaaaga cctgaaaaac atacacataa      4980
     ataataaaat tctgaaagtc actaccagaa atcaaagtaa acagttaaat tcctgcgcag      5040
     gaaaagaaaa agaaaaagaa gatttgcata agcaatcttt aaatgcttct cagcccaacg      5100
     tatacgaagt catagtaaat gaagaggtac gaaaagtagt gaccttgcga agaacagatt      5160
     ctctatgctt actaaaacat ggaaagaaag ttatagcaag aattgatgtt agcgatatgt      5220
     acaccaatga aatttttgac ttaggtcagt tctttcaaag gcttgaaaca gaagccggta      5280
     tactcaatat cagccaactc aaagtggcac cgagcgaaaa gatctttgag gtcatctcaa      5340
     tagattcttt taaatcaatg ggcaataaaa tattgaaatc tttaagagta gcgctactca      5400
     agccggtgac ccaattatca aatgataata ataaagagaa agaagcaata ctgtttacgt      5460
     atcatgacga tccaatacaa ggaggtcata maggcatagc tagaacaata gcaaaaataa      5520
     aaaggcatta ttattggaaa aatatgtcaa gagatatctc aaactatgta agaaaatgcc      5580
     aaaaatgtca aaagtcaaaa ataactaaac ataccaaaac tccattaacc attactgaaa      5640
     cgccacaact ggctttcgat agggtaatcg tggatacgat cggtccctta cccaaatctg      5700
     aacaaggaaa tgaatacgca gtaacactaa tctgcgattt gacaaaatac ttggtagcaa      5760
     taccaattaa agacaaaaac gcaaaaacag tgtcacaagc catatttgaa gattttattc      5820
     tgaagtacgg tccaatgaag acgttcatta cggacatggg aacagaatat aaaaattcaa      5880
     taattgaaga attatgtaaa aatcttaaca tcaaaaacat aacttctacc gcacatcatc      5940
     accagacagt aggtaccgtg gagcgaagcc acagaacact taacgagttc atacgatcat      6000
     acatatcagt tgataaaaca gattgggacg tatggctaca atacttcgta tattgtttta      6060
     atacaacacc ttcaatggca catgactatt gtccatatga actagtattt ggtaaatctt      6120
     caaacttacc aaaacacttt aataccgtag ataatataaa acctctttat aatatagaag      6180
     actatgctaa ggaatctaga tatagactag aacaggccta taagcgcgct agaataatgt      6240
     tagaaaaaca taaggagaaa aataaaaaat attacgataa gaaattaatc aattttgaat      6300
     taaaaatagg agataatgtc ttactaaaaa acgaaacagg tcataagcta gattttaaat      6360
     acactggacc ttacaaggta gaaagcgtaa acgataatga taacataata atttcaaata      6420
     ataaaaataa acaacaaata gtacataaag atagattaaa aatttttatt tcwtaagcga      6480
     tcaatattct tataaacatt taaaaaaaaa tttacaamaa aaaaataaat aaaataaaac      6540
     aaatactaag gaaataaatt ctttccatat aaaaaataat aatctaaata aaaaaaaaaa      6600
     aaacatttat atatatatat aatataataa twatagactt tttccaaata taagtaataa      6660
     tattaagaaa ataacttcat gtaattacgt tatttttcta awggagggag a               6711
//
ID   Gypsy-12_DHyd-LTR repbase;    DNA;    INV; 475 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-475
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2399-2399 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 475 BP; 142 A; 112 C; 85 G; 136 T; 0 other;
     tgtagtatgt tcatatatcg aatgctcact gtactcagtg aaatgcataa atatcaatgc        60
     agaaacattg tagcactttg attgcaacat ttatatatac aaatccaaac ctcagcactt       120
     gtggtaatat gatcgctctt gagcgcatat gcctgatcaa cgctgagtcg gcatacttga       180
     catccgctaa agctatgtca agtatatgaa cataatacct cctctcttcc gcggcgactc       240
     tcgtcgccca tagatataca tatatacaca gtaatacata agctgaccgc tcctctgccg       300
     gcgtcactgg cagcgtagtc acgcggccct ttagctttac tttgaatatg taatagacta       360
     agaaatcatt gaataaagag acgcggtcca acacagtaca ctcagtgttg tgacaatttt       420
     tacaacaata catcttcggt ccttctactt cctgatgatg ggtgacaacg ttaca            475
//
ID   Gypsy-12_DMel-I repbase;    DNA;    INV; 6367 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6367
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1045-1045 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1052..2092,2052..3077,3257..3538,3542..3697,
FT                 3690..4034,4117..5559)
FT                 /product="Gypsy-12_DMel-I_1p"
FT                 /translation="MSTKFKHKTKSTIPNLTRTTRQTTKTPTLIRNITETN
FT                 PTDMTTSSRMSNAPQNTSGSSIYELPAGLPDVIKYLPTYDGNPYALKRFIE
FT                 SVEEILLMFRDTDQTPRGKMYLRAIRNKIEGKASELLDRLDTPLDWDEIKR
FT                 NLTRKLLDNRDELTLIEELHEVPFRRLPITKLYDTILDLKRVLTCMADSKE
FT                 LPALAIIEKKNFYMALCLKTFIKGLTVPLRNVVKASRPNTLDEAFDIAIQE
FT                 RDEYMQERRRYPANQHNNRISDYQQGRGQYRALPYSTENRYGQRIALTTRL
FT                 MDIIISLEQLCHLRQNQQIATHANIEVENSIVHVRLILADLTIWKPLRSNQ
FT                 HFTIQSGSLFGATSTSQFRGNCKFSKTSLREQTGYLKSYKDKHGSTLPYIL
FT                 ISSPFGRKLRFLIDTGASNSFIDPKFVPLQQRESLSTNTVIKTVLKEIQVT
FT                 EKVEYPAFSEFNLKDTFIFLILKFHEYFDGLIGLDILCTIKANIDLKMLIL
FT                 QTPAATIPIHIERNRATDIFNIEASSGMIVQIPVECEQGPFLLDSVELVDN
FT                 VYIQQGLYTADNYNAWIEIVNYSDQDQTICLEFPLFTTQFIQEEYVELNFH
FT                 WCNEDPPTDMKNDAKFHERVNTDHLSDEEANQLKHLCLQFPFLFHDPSDRL
FT                 TFSNTNKHKMETTDDIPIYAKPFRYSYQEQKEINDQIKICVRHYEFTRMPF
FT                 GLTNAPATFQRVMNNVLGNLKGRCCLVYLDDIIVFSGSLQQHISDLKEVFS
FT                 KISYEIKAPFTEIKIFKERDRILRTHCYGPRYTKSDKIIAIKKFPLPRSKK
FT                 QIKSFLGLLGYYRKFIKDMARITKPLTVQLKGIKEFKSVTIDQEYIDAFEK
FT                 CKTLLCNDPLLQYPDLSKRFILTTDASNVALGAVLSQGPLGSDKPVCFVSR
FT                 TLSDTERNYATVEKEMLAIIWAVKYFRPYLFGRKFVIVTDHKPLNGERFSK
FT                 LGSGCISRVEIDMNINDSNSITGTCGDTVHSADEHMDDHIHISEKPLNDFN
FT                 YQVILKYGAPIESKTEVIFKRKTRQVISELSFTEQRITDILKKTLKPNRTV
FT                 AIFAPDDIFQQIQESYKKYFSNNNIYNILRCTIFLTDLLETQDQEFQINKY
FT                 HINNNHRGTDETVAHMKRQFYFPNMKSKIAQTINNCDVCHTLKYNRHPPNI
FT                 KFQVTETPTMPLDILHTDLYTINGKYVVTVIDKFSKFALGYTIPTRDAINI
FT                 VNAIRRFIVANGIPKKIVYDQGAKYNSNLFKDFCKQYNIERHVTSFQQSSS
FT                 NAPVERLHSTLTEVYRIILEEKKKKKVQIDHEEILTETFITYNNAIHSATK
FT                 LTPYELFSGRTHVFQQTIKFDDEHDYLKKLNEFQKTIYPKVCELVQNNKVH
FT                 NIGKLNQERKEAIQVETEDVVFRKENRRNKLTPRFSKQTVNTDEGVTFTTN
FT                 KRQKIHKSKIKTQLGHK"
XX
SQ   Sequence 6367 BP; 2451 A; 1204 C; 1047 G; 1662 T; 3 other;
     ggcgcagttg ataaccagga gcgaattgca tattccttgg gaaacaacct acgacgcttc        60
     ttaagtacaa atttgtgagt agagcgatat tttaaaaaga cgcaagagtt acttaactgc       120
     acttaaaagt aaaacgtagt ttttatttca ccaaatgaaa aagaaaatga aacaaaaaca       180
     aaaaatatat ataaatatat cataataata aatatattat taaaaactaa atatcaacaa       240
     aaaaaaattt gaacaaaatg aaagtcaaaa tttttacggg gaacacataa caagtagatg       300
     ctgctctaaa taagaagcac tgtgataaaa aacaatcaga tgccactcca aataagaagc       360
     actgttatac aaaaaaaaat aagaagcacg tttatacaaa aaagaagggc tacatacata       420
     catacataca gaaagtaacg agactacagt tagaatgcag cgtagaagca gagaactggg       480
     aagtgctgtg agagggctag gctcgatcag tggtacatgc ttgatcccag tgccgacata       540
     tagtggaggg aggttccgtc aagttggacc cgaacaatta tgttcgaaca ggtcactgat       600
     acgctatgga accacagaaa catacaaatt tcagatcagt ctacacaaac tggtgaaaaa       660
     ctacaactta gaaatgatca aacaagaaat aaccttacat tggtgatata cgagacgacc       720
     atatcggcca tttggtagct gtgttgtaat ctctcgaccg ctgtagtgag tcgatcgcct       780
     tcacagagtc aaatacaatg aaatttttat tgcgacgtaa atatgagtct gttagtatgt       840
     catgaatgtg gaagataaca tgttaagaaa ttaaaacgga tcaacacatt aatacaatgt       900
     aaccttgcct ccatcttata atatcaaatg aaatatattc cgcacaatac atatattaat       960
     ccaagtatca ttgcaggtat tgaacccata ataaaagcat tcatcacacc aaaccacact      1020
     gtatattaag attattataa gataatatta aatgtcaaca aaatttaagc ataagactaa      1080
     atctactatt cctaatttaa ctcggactac tagacagaca accaaaacac ccacccttat      1140
     aagaaacata accgaaacta acccaacaga catgaccaca agctcaagaa tgagtaacgc      1200
     tcctcaaaat acgtcggggt ccagcatata tgaattgcct gccgggctcc cagacgttat      1260
     taagtacctt ccgacctacg acggtaaccc ttacgcactt aagagattca tagaaagcgt      1320
     ggaagagatt ttattgatgt ttagagacac agaccaaact ccaagaggga aaatgtattt      1380
     aagagcgatc aggaataaaa tagagggcaa agcgagtgaa ttgttagata gattggatac      1440
     cccattagac tgggatgaaa ttaagaggaa tctaacaaga aagttactag ataacaggga      1500
     cgaactgacc ttaatagagg aactacatga ggttcctttt agaaggctgc caataacaaa      1560
     actgtatgat accattttgg atctaaaacg agtattgaca tgcatggccg attcaaagga      1620
     actaccagct ttagctatta tagaaaaaaa gaatttctat atggctcttt gcctgaaaac      1680
     ctttattaag ggtctaaccg taccactccg gaatgtggtc aaagcttcta gaccaaatac      1740
     gttggatgaa gcatttgata tagccattca ggagagggat gagtacatgc aggagagacg      1800
     acggtaccca gcaaatcaac ataataatcg tatttcagac taccagcagg gcagaggaca      1860
     gtatagagct cttccttact caaccgagaa tcgttacgga cagcgcatcg ctctaacaac      1920
     gaggttaatg gacataataa tttctctaga gcaattatgc cacctaagac agaatcaaca      1980
     gatagccact cacgccaata tagaggtgga aaattcgata gttcacgtca gactaatact      2040
     agcagattta acaatctgga agcctcttcg gagcaaccag cacttcacaa tttagaggaa      2100
     actgtaaatt ttcaaagacc agcctcagag agcagacagg gtacctaaaa agttataagg      2160
     ataaacacgg atcgacacta ccctatattt tgattagttc accgtttggt aggaagttac      2220
     gttttttaat cgatacaggg gcatcgaatt cctttatcga tcctaaattt gttccgcttc      2280
     agcagagaga atccttaagc acaaatacag tcataaaaac tgtattaaag gaaattcagg      2340
     tcaccgaaaa ggtcgaatat ccagcatttt ccgaatttaa tttaaaagac acttttatat      2400
     ttttaatcct caaatttcac gaatatttcg acggactaat aggtcttgac atcttatgta      2460
     ctataaaagc aaatatagat cttaaaatgt taattttaca aacccctgcg gcaactatcc      2520
     ccattcatat tgaacgaaat agagctacgg atatatttaa tatcgaagcc agttcgggaa      2580
     tgatagtgca gataccagtc gaatgtgaac agggaccatt tttacttgat tccgtagaat      2640
     tagtagataa tgtttacatt caacaaggac tctatacagc tgacaattac aacgcatgga      2700
     tagaaatagt caactattct gatcaggatc agacgatttg tttagaattt ccattattta      2760
     caacccaatt cattcaagag gaatatgtag aattgaactt tcattggtgc aacgaagacc      2820
     ccccaacgga catgaaaaac gacgcgaaat ttcacgaacg agtcaatacg gaccaccttt      2880
     ctgacgaaga agcaaaccaa cttaaacacc tatgtttgca atttcccttc ctttttcacg      2940
     acccgtcaga tagattaaca ttctcaaata caaacaaaca caaaatggaa actacagacg      3000
     acatacccat atatgccaaa ccctttagat actcctacca agaacaaaaa gagatcaatg      3060
     accaaataaa aatatgttag aacaaaacat aattagagaa agccattcac ctgagctccc      3120
     tgtttggctg gttccgaaaa atccgaaaca agagaacaaa aatggagatt agttattgac      3180
     tatagagaac tgaacgaaaa aaccgttaaa gacagatatc ccatccctaa tattaacgaa      3240
     gctgatgtag agctaggttc gacactacga atttaccaga atgccatttg gtctgacaaa      3300
     tgcccctgca acattccaaa gggtaatgaa caacgtttta ggtaacttga aagggagatg      3360
     ttgtttagtt tatctcgacg acatcatagt tttttctggt tcattgcaac aacacatatc      3420
     agacttaaaa gaagtattca gtaaaataag ttacgaaatt aaagctccat tcacagaaat      3480
     caaaattttt aaagaaaggg acagaattct taggacacat tgttacggac cgaggtacta      3540
     aaccaaatca gacaagatta tcgccattaa aaaatttccc ttgcctcgtt ctaaaaaaca      3600
     aattaaatcc tttttaggat tactaggcta ttataggaag tttattaaag atatggccag      3660
     aataacgaaa ccacttacag tccaattaaa aggaatttaa atctgttaca atagaccagg      3720
     aatatatcga tgcattcgaa aaatgcaaaa cccttctttg caatgatccc ctactacaat      3780
     acccagacct ttctaaaaga tttatcttaa caacagacgc aagtaacgtt gcccttggag      3840
     cggtgctatc acaaggtccc ttgggttcgg acaagccggt ctgttttgta agtagaacat      3900
     tgtccgatac agaacgtaac tatgccactg tcgagaaaga aatgttagca ataatatggg      3960
     ctgttaaata ctttcgccct tacttgtttg gaagaaaatt cgttatagta actgatcata      4020
     agccacttaa tggctgatga gttttaagga accgacctcc aaaatagtta gatggagaat      4080
     gcaattatta caatatgatt acgaaatttt gtataagaaa ggttctcaaa acttggtagc      4140
     ggatgcatta gcagggtaga aatcgacatg aacataaatg atagtaactc aataacaggg      4200
     acgtgtggag atacagtcca ctcagcagac gaacacatgg atgatcacat ccatatctca      4260
     gaaaaaccct taaacgattt taactaccaa gtaatattga aatatggtgc tcctatagaa      4320
     tctaaaactg aagttatatt taaacgaaaa acgagacaag taatttctga actgtctttt      4380
     acagaacaac gaattacaga tattttaaag aaaaccttga agccaaacag gactgttgca      4440
     atttttgcac ccgacgatat ttttcaacaa atacaagaga gttataaaaa atacttttca      4500
     aacaataaca tttataacat tttaagatgt actatcttct taaccgattt actagaaaca      4560
     caggaccaag agtttcaaat taacaaatat cacataaata ataatcatag aggtacagac      4620
     gaaaccgttg ctcacatgaa aagacaattc tattttccaa atatgaaatc aaaaattgct      4680
     cagactataa ataattgcga tgtctgtcac accttaaaat ataaccgcca ccccccaaat      4740
     attaaattcc aagtaaccga aacacctacc atgcctttag atatactaca cactgactta      4800
     tatacgataa acggaaaata tgttgttact gtcattgaca aattttctaa gtttgccctt      4860
     ggatacacaa tccctacaag agacgcaata aatatagtga acgctattag gcgattcata      4920
     gtagcgaacg gcatacctaa aaaaattgtt tacgatcaag gagctaaata caattcaaac      4980
     cttttcaagg atttttgcaa acaatataat atagaacgac atgtcacttc ctttcaacaa      5040
     tcttctagta atgccccagt cgaaagacta cattctacac tcactgaagt gtatcgaatc      5100
     attttggaag aaaagaaaaa gaaaaaagta cagatagacc acgaggagat tctaacagaa      5160
     accttcatca catataataa cgctatacac tcggctacta agctgactcc ttatgaactg      5220
     ttttcgggac gtacacatgt attccagcaa accattaaat ttgacgatga gcatgactat      5280
     ctaaaaaaat tgaacgaatt ccaaaagaca atatacccta aagtatgtga actagttcaa      5340
     aacaacaagg ttcataacat tggaaagtta aatcaagaaa ggaaagaagc tatccaggta      5400
     gaaacagaag acgtagtatt tcgtaaggaa aatagacgca ataagctcac ccctagattt      5460
     tcaaaacaga ctgtaaatac tgatgagggc gttactttta ctacaaacaa aagacaaaaa      5520
     attcataaat ctaaaattaa gacccaatta ggacacaagt agagaattcc aaatataacc      5580
     tgaataataa caaacataca tggatacgat aaacagaaaa ctcaaattgc taaagaaata      5640
     aataatgtaa ataacaagaa aaaatgttgg aatgtacgat taaaataaac gctaatatag      5700
     atttgactat gttacgctta aataaaattg cagaaacctt attagtgcga aactaaaaat      5760
     aattcctagt ttatatataa atacaaaaaa agtcatgaaa tcaaaataag aaaatgttta      5820
     caacttaatt tccctaaaca caatacaaat aatgattaaa ttttttttct ctattaaaat      5880
     acttatgttt acattagaca tttatcagtt aacaaattaa ttcattccgt acctattaat      5940
     aacacacaaa ttattgttac agcaaactgt ataactttat agcgagtaag aacacacaaa      6000
     cattgtaatt taaggaagaa tataatagaa ttcatcatgt aaatatgtga gacttgcaaa      6060
     aagccatctt caatacatct aaccatgaag acatcgtcaa catcatgacc ccggagctac      6120
     cgaacttact caacaatctg tcagaagctg gttccaattt cgacaaggat tatgcaaata      6180
     cggagcttca cgatagaatg gaacacacct taaagtacca tacgcatktt tgagtgtatt      6240
     cttttttctc tccgcgggaa tcatacmttt gcaataacaa agaatgacaa ccttcattgc      6300
     mtcatcacca gtcacacccg atcacgccat tccttcgtta tggccctctc ttcagtcttg      6360
     ggggagg                                                                6367
//
ID   Gypsy-12_DMel-LTR repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-523
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1039-1039 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 523 BP; 171 A; 118 C; 89 G; 145 T; 0 other;
     agttaccact acacattcac cactcccctg aaaccgtcca gattccgctg aatgacaacg        60
     gcatcaaggg ccacaacaac aacaactcag tagtccacat acatgaataa acacatatta       120
     taaaataagc tcatacacat gttacacaca cactttgagc atacatggtc tcgaacattc       180
     taggaataga tttcaccata acgataatgt tgcatcagcc tctaattgtg cgttgattgg       240
     tcagtttaca tttgtagctt tgaaaggacc gttatagcga ggcgttgtag ccgatgccta       300
     gcgcagtttc ggcgttaggc aaaagaagtt tttgcgacgc attgtcactt gcattttgat       360
     ggtacgaagt gacacactta aaaccggaac attaactcta caccttaaat gtaattttca       420
     aataaaataa gaagtcatat tcatttgtta cctaatctgt gttcggaatt aaaacatata       480
     atttaaccaa ctgtccacgt ggagctacgg cccatctata act                         523
//
ID   Gypsy-12_DMo-I repbase;    DNA;    INV; 6172 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6172
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6172 BP; 2166 A; 1317 C; 1281 G; 1408 T; 0 other;
     ggcgcccaac agcggatgaa acccgcgacc ccaaaaccaa cagtagttag gataagccct        60
     gcaaataaca tgtaagtggt ttattcaact aaacgatttt aagtgataat aaaaatataa       120
     ataaaagtga aaggaattga gctaagcaag ttgttgaaat catctcgaaa aatcccagct       180
     tatcacattc tacccatacc gattaacatc ggccatagga aactctgtga ataaagtgtc       240
     aattacatag gttaagggta caagctgatg agcttaccag gaccctatag ggaaattaag       300
     agagaatatt tcagcgacga agactgggac tcaaattcag aggccagttt agaaaacaca       360
     gcagatatga acccagaaca gattcaaacg ctcataagtc aggcgttggc acagcaggag       420
     gttaggttga gggaagaatt tgacgctagg ctaaattctg taaaccaaag ggtgaatagc       480
     ttacgccttg aagcacctca ggttgaagca taccaaagaa tctcgatcga ccccgatgtg       540
     ggatgtagta tatccctgga ctgtgtaaaa tctattcccg agttcaatgg tacgcaggac       600
     gaatatgtcc actggagaca gtccgccata gatgcgtacg agcttttcag accctacata       660
     ggcagcaacg ctcactacca agcagttaat ataataagaa acagaattaa gggtactgca       720
     agagctttgc tttcttcata caacacagtt ctaaattttg atgctataat agcaagatta       780
     gactgtacgt atgctgatag aacatcgctt agaatcctac gtcaacagct agagatggtc       840
     cgacagggcg actctacctt aatgcaatat tatgacgagg tcgagcgcaa gctaactctt       900
     gtcacgaaca aggtagtaat gacccatgat cagaagagag cagtaatgct aaatgaggag       960
     gttaggaacg atgcgctgca ctcattcatc tcaggcctga agaagacctt gagatcagtc      1020
     gtgttccccg cgcagccgaa agacctgccc tctgctctgg ctttggccag agaggcagag      1080
     gctagcatcg agcgaagcaa tttcgcagcc acatatgcaa agataaaacc cacgcaactg      1140
     agggtaatag aaatcaaaga cgctcatatg agaagcagat aaaaaataac gatgccgaac      1200
     gtggccaaga aagaaacccc cactatacca aaaaacaggg caagcaacag cagcagaaaa      1260
     gctatgcgaa tagtagcaac aaagtagacc agggtcaaca acaacaagaa cctatggacg      1320
     tcgatgcgtc aacagcaaaa tttagacaac aaacgcaata cagtaaggat catgccgaaa      1380
     attcgcaagt agaaagtgca cgaggccaaa aaagaccaaa tccatctgaa cgcgtgtcag      1440
     gccaaaggcg tcagcgggtg cacactactg tgcaacataa ccacgacaat gacgaccata      1500
     gctataataa aacagcctcc agagaggttg ctgaggtcga cgacaactcc gattcggcga      1560
     caggggacga ctcgattaat tttttaggga acgctccagg ctaccgttcg tcgaacggca      1620
     gctggcaggg aaaaatgtaa gaattttaat cgacacgggg gcggccaaaa actatattag      1680
     acccttaaca gggctaaaaa atataaggcc agttaaaacc ccattcaatg ttagttccat      1740
     tcatggtttt aacaaggttc accagaaatg tttaattaac attttcggcg taacaacatc      1800
     attctttcta ttagactccc tggctccatt cgacggcatc ataggcttcg acttgctaac      1860
     gcagatagga gcaactttga atgccgaaga tggcacaatc aactatggga ctgagtccga      1920
     aaaactgcag caccacatat gcgacaatgt aaactttaca aatgtcgatg atattgccgt      1980
     accagaagcc ataagggccg agtttaacaa catgatccta aacaaagtaa aggcattttc      2040
     agcttctaac gaagcattgc cgtttaatac ttctgtagtg gccacaatac gcacaataga      2100
     caatgagcca gtctattcta aactttaccc acaccctatg ggtgtcgctg atttcgtaaa      2160
     aaacgaaatc aaagaattaa tgcgaaatgg cattatcaga ccatcaaagt caccctacaa      2220
     caacccgaca tgggttgtcg ataaaaaagg tcgtgacgaa aatggtaaca aaaataaacg      2280
     cctagttatc gactttagga aactaaacga acgtactatt gccgacaaat acccaatgcc      2340
     aagcattccc atgattttgg ccaatctagg aagggctaga tactttacaa ctctggacct      2400
     taaatccggc tatcaccaga tttttctcgc ggaacaagac cgtgaaaaaa catctttctc      2460
     tgtaaatgga ggaaagtatg aattttgtcg attgccgttc gggttgaaga atgctggaag      2520
     catcttccaa agagcgattg atgacgtact gcgtgaacaa attggcaaaa catgctatgt      2580
     gtacgtagac gacgtcataa tcttttcaga aaacgaaaga gaccatgtca aacacatcga      2640
     ctgggtctta acaaggctat gtgaagctaa catgaaagtt tctagggaaa aaacccattt      2700
     ctttaaaaag gaagtagagt acctagggtt tatagtaact gaaggcgggg cgaaaaccga      2760
     cccggaaaag gttaaggcta ttcaggaata tccggaacca aagaacttat ttgagcttag      2820
     atcatttctg ggcatggcca gttactatag gtgttttgtt aaagactttg ctgcaatcgc      2880
     gaagccatta acaagcatgc tgaaaggcga aaatggttcc attagcaagc acatgtcaaa      2940
     gaaaacgatt atcagcttcg acatcaacca gagggatgcc ttcgagagac taagaaatat      3000
     cctagcttca gaagacgtta ttcttagata tccagacttc aagaagccat tcgatctaac      3060
     gacggatgct tctgcatatg gtattggtgc ggtactatca caagatggta ggcccattac      3120
     catgatatca agaactctga aagacaggga gacccattac gccaccaatg aaagaggcaa      3180
     gaggcgttag gcaagctaca gcaatacctg tatggtacga gagacattaa tatctacaca      3240
     gatcatcaac ctctcacctt tgctgtgtca gatagaaacc ctaacgcaaa aattaaaaga      3300
     tggaaaacgt atatagatga acataacgca aaaatccatt acaaacctgg aaaagagaac      3360
     cacgtcgcag acgcattatc tcgacaaaat attaacgcct tgcaagggga gatagcgtca      3420
     gacacagcca ccatccatag tgagctgtcg ctgacatata caattgagtc aacagacaag      3480
     ccaataaact gtttcagaaa ccagataatt ttggaagaag cacgcttccc tctgaaccgg      3540
     aacttcatat ttttcggcga aaaaattcgc catattattc acttcacaga tagaaatcaa      3600
     gcattaaatg aagtaaaatc ctttgtcaaa ccgaatgtag tcaacgcaat caattgcgat      3660
     ctcccaatgt tggcattcat ccaacacgaa ttagtaaaaa gcttcccctc cactaaattt      3720
     cgttattgca aaaatgtagt aactgacata acaagcaagg acgaacaaag agagatagtc      3780
     atgacagaac ataatcgtgc gcatagagcc gcacaagaaa acgtcaatca agtcttggag      3840
     gagtattact tcccgaaaat gactaaacta gcgacagaaa tagtggcaaa ctgcaaaact      3900
     tgcactaggg cgaagtatga cagacatcca aaaaaacatg ttctgggaga aacaccaatc      3960
     ccatcatacc ctggcgagat attacacatt gacatttttt caactgacaa aaagctgttt      4020
     ttaacatgta ttgacaaatt ttcaaagttt gcaatggtac aaccaataat gtcacgaacg      4080
     ataacagatg taaaaaatcc tatcgtccaa gccatcaatt tcttcccaaa aacaaaagta      4140
     atatactgcg ataatgaggc gtcttttaat tcagagacaa taacctcatt attaaaggac      4200
     agatatggaa tagacattgt gaatgcacca ccacttcaca gtacctccaa cggccaggta      4260
     gagcgctttc acagtactct gttggaaata gcgaggtgcc taaaaatcga gaggaaaata      4320
     gacgacacag tcgagctaat catacatgcc acattggagt ataatcgatc gctacattct      4380
     gtaacaggca aaaaaacgat tgaggtgata catgcgtcta ccaatgagtt taaaaaagca      4440
     attaaaagca aagtggaaaa aacgcaacag gtgcagctag atagaaacaa tccaaacagg      4500
     cagaataaag tgtttgaggt gggagaaaag gtattcgtta agaccaacag aaggttaggt      4560
     aacaagctca cccccttatg tgaggaaaaa actgttcagg cagacctagg aaagtctgtt      4620
     cttatcaagg ggagggtggt ccacaaggac aatttaaaat aagaatttaa tagattagtg      4680
     ataaaactaa ggaattcata gatttaaatt tctttactct cacaggatca ttacgccagt      4740
     cttaatcttg ctggcgacgg taaatgctcg gatcaccgat tattcgcatt ccaggtacat      4800
     tcctgttgta gacggggacg tactggtatg ggaacagcgt gactatgtta ggcacactag      4860
     caacctgaca gagttctccg taatgttaaa agaaacagaa aagttgtccg agttgtatcc      4920
     tcagtctcat atgaggaagt tattagatgt tgatacagac catcttagaa accttttgtc      4980
     cgtattgaaa gtacaccaca ggattgccag aagcttagat tttttaggga cagtgctaaa      5040
     agttgtggct ggcacacccg acgcatcaga tttggaaaga attaagataa cagagtcaaa      5100
     gttaatcgaa tcaaacaaca gacaggtaga gataaataca gaaacccaaa aacaaataaa      5160
     ccagttaacc gatacagtaa atcaactaat caagacaaaa aagaaagagc aaatcgacac      5220
     ttcgcattta tatgagatac ttttggctag gaatagaatg ttgataactg aagttcaaaa      5280
     tttaatgctt acaatcacac ttgctaaatc aaatacaatt aatcctacaa tatttgatca      5340
     cgacgactta aaatccgtat tagttgagca tcccacagat gtccctatag taagtctatt      5400
     ggaagcatcc aatattaaag tccttcagtc cgagaacata atccatgtac taatagatta      5460
     ccctagaatt aaatttgtat gtaaaaaggt catcattctt ccggtctcac atgagcacac      5520
     cgttcttcaa ctccaagacg ataccgtagc ggaatgcgaa aacgacgtcc tggcggtctc      5580
     cagctgcact acaacaacac acacatcgtt ttgcaagata gcatctcgag atacctgcgc      5640
     acaggctctg catgcgggtg gcaaagcgca atgctatacg caacccagcc atctggcacc      5700
     catcacctat gtggacgacg gcatcatggt aataaacgaa agcccagcac gagttagcac      5760
     cgatgacggt ccagagatac aggtcaatgg cacttatctc atcacttatg aacacatggc      5820
     catcataaac ggtaccaagt ttgcaaatcg tcgcgaagct ctggacaagt taccgggcat      5880
     agccccattc cccattaatc aacatcatca gccatgagcc ggtactcagc atgccattgc      5940
     tccatagaat gaacaacaac aatcttcacg tcattcagga gttagaagaa aaagtaagat      6000
     ctgcagggtc gccaaaggtg tggttcagca ttggagtagt gatcagcctc gtatgctgcg      6060
     gttccattct actctaccta ggactgagaa gaaggcagac ttcaaggaaa atgcaaagga      6120
     ttgtcaacag cttcaagatg aacgaggacg cccatagatt taagggggga gt              6172
//
ID   Gypsy-12_DMo-LTR repbase;    DNA;    INV; 532 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-532
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 532 BP; 145 A; 124 C; 120 G; 143 T; 0 other;
     agttaacgag tgcccctcgc acgtagcaac ttaagacttt atatatcatt gggtaaacag        60
     ttgcgcgcat ggtgctgacg cggcgaatgc ctcagttcag tgccctgatc gcagcggcca       120
     gcgacggtaa cctgatccct tgcgcatgtc gtaagagcag cgttatcgct tatgctgaag       180
     tcggctcgcc gactatgacg ttgtagctta tgctgtgtca gctataatgg gtagcttaag       240
     cttgacaatt gtatgtttag aatagcctca ttccgactcg ctttggagcg gaaaatcagt       300
     tctgtttgag aatccaaagc taacgccagc tttcaataaa tatcaatccg aataaactat       360
     ttgtatttca attgtgtcgg agacattgta tcagctgagc caaggaacat agagccctta       420
     tcgagttaga agtaccgatg acgcctcata tcagccacct agcagcataa agcatcgtgg       480
     gactgactat catctcaaca actcatcgtt ggacagactc atcaaattaa tt               532
//
ID   Gypsy-12_DPer-I repbase;    DNA;    INV; 6129 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6129
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1529-1529 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           303..1691
FT                 /product="Gypsy-12_DPer-I_1p"
FT                 /translation="MESHTEEQASGYYPGEFVANPGVSTGWIHKRRREELE
FT                 SFAEEFGFSREGNVEDLRRSFAELVAGPLEHDAWVRLAELERQYARSPGRA
FT                 RSPQPDTSAPTEKRKTDPKLSLQVPGIMEGKASTSPTSITAEDLPKPPPPE
FT                 PRPSPMRRILPTAGGNGPTDGHYYSHAAQMAERIRKWGIQFDGQDDPLSFV
FT                 ELLEERALSYGVDMNYVPRAMAELLTDRANRWFRTSRLQSASWADFRQEFL
FT                 AFFLPPRYFEQLEDQIRDRKQAVGEPFKDFVIELRLLMHHAGYDEAKELSR
FT                 IYDNTLPAYQLYVRRHELRSLTQLTMLATEFESIQERNVPATLIPPRQPPR
FT                 YTRPTAQQNESGTNRAQFRKPHWNTSEPARKPHQAGASAQEATHRMITTPI
FT                 ANPHAACRRCGEAGHVSRDCTNPSILFCWECGKRGTRTVGCCRQDPSGNDS
FT                 RPQLTREQPGTTLPQKTN"
FT   CDS           1574..5794
FT                 /product="Gypsy-12_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MRQARNTHRGLLPPGPVGKRLASPADTGTAGHDASSE
FT                 NQLRNPLQVHDGRIVARVTIGGRRTEATVDTGASRSFINADLARQLGHDND
FT                 LRDACVPIRLADGSAREITQILLARVKLDEQEVQMPLLVLPNMLEQAIIGM
FT                 DFLCAIETTIQCGTTRLHLQGSQRPLPNTPMITASQVHAHGPKNLRPPPPT
FT                 NPPPRHETRAQGTRNTEPMATTRHTSPRPTPRNPKPSKATKKASRSPEGTD
FT                 AVPPTMGKEPRTPLQKTTRPQQRQPPRSSQALEVPPPTATLAHERVDTALD
FT                 AKTTPTTPTDPLLPRPLRQEPGGAITAARGINRNPAAPGADTPSIVTDIME
FT                 RLPGNTSYGAGMRPSTTPGAMSVNLTAQTSRRSNATTAIETRTFVHHAEYN
FT                 VAQAPPRTHTSTPHLSDAPAVVAGISEYTREVEPPSAFDTTILPENPDYTC
FT                 DPGIDEPPEDDSERISDPWPPDIAPRIQEFLDEELPTLAGLRGTTDLTEHT
FT                 IVMRDNRPIKQRYYPKNPAMRRIIDEQVDQLIAEDLIEPSRSPHSAPIVLV
FT                 RKKDGRWRMCVDYRQLNERSIPDAYPLPRINYILERLRNAHFITTLDLKNG
FT                 YWQIPMARDSREATAFTIPGRGLYQWKVMPFGLHSAGATFQRTLDAVIGAD
FT                 MEPFAFAYLDDIVIVGKSFQEHLNNVKEVFARLRKANLRINTDKCAFFQRR
FT                 IKYLGHMISEEGIHTDPDKIAAVKDLRPPTNLKELRQCVGMAGWYRRFVPN
FT                 FATVVQPMSLLLKKGKAWTWGQEQQDAFDELKTLLTTAPVLACPDFNVKFS
FT                 LQTDASNLGVGAVLTQEIEGKERVIAYVSRRLNKAEENYSATDKECLAVIW
FT                 AIRKLRCYLEGYRFDVITDHLALKWLNTLESPYGRVARWALELQQYQYDVH
FT                 YRAGNQNVVADALSRQPLETLSRIEEEDNTACTWLKQRIQQVQDEPQKYPD
FT                 YTHENGQLYRYLGHGADDDDHIPWKLCVPKNGRTRVLRECHDEPTAGHLGV
FT                 RKTILRTTQRYYWPGLHRDVRRYVQGCVSCQKFKATQRKAVGRMLTRKAEE
FT                 PFATLCADFVGPLPRSKHGNTILLVFFDTFSKWVELVPLKKATTANLERAF
FT                 RERILSSFGVPKLFVCDNGTQFTSRSFKTFLRTAGVDLQHTAPYCPQENPT
FT                 ERANRTVKTMIAQFVDDHQNTWDELLPEMTLAINSSVSETTGFSPAFLLQG
FT                 REPRLPGTLYDEVTPGTGSTQETASSKATRLKEVFAIVRNNIQRASQEQGR
FT                 HYNLRRRLWRPAIGSLVLLRQHHLSNAAEGFAAKLAPKFDGPYRVNSFPSP
FT                 NIAKLQHCESRKQKTANINDLREFHDHEPDEPTGLHRNADIAEETNETATR
FT                 RPDRGTAESAEPGAPGQERQRQRNTDRRRHANNNASATNPSTTK"
XX
SQ   Sequence 6129 BP; 1733 A; 2032 C; 1566 G; 797 T; 1 other;
     acaagtggcg cccgagcagg gacccaaggg aacgtcagcg agggtttgtg gaataaaacc        60
     ccacggccac tagagcaaga acacaagaga acaacccaaa gaaaaccccg acctcgcgca       120
     atatcaacgg caagagttgc gcaacgagca gacgaaagcg cgacacagcg acagagaaac       180
     gcgaacagtg ccgtcacccc gagaagaaat tcgaagcgtc agccgcgaag ctcgacacag       240
     tgccctagtg aaggaaaagc gcaagcccag cgaaacagcc aactcaagta acgatcggag       300
     cgatggaatc ccacacagag gaacaggcca gcgggtatta ccctggagaa ttcgtcgcca       360
     acccaggggt gagtaccggc tggatacaca aacgtcgccg agaggagctg gagtccttcg       420
     cggaggaatt cggattcagc cgcgagggga acgtggaaga tttgcggagg agtttcgccg       480
     aactagtcgc cgggcccctc gaacacgatg cctgggtcag gttggcggag ctcgagcggc       540
     agtacgccag atcgccagga cgagccagat cgccccagcc cgacacctca gcaccaacag       600
     agaagcggaa gacggacccc aaactcagcc tacaagttcc aggaatcatg gaaggcaaag       660
     ccagcacctc accgacatcg ataaccgccg aagatctacc gaagcccccg cccccggagc       720
     caaggccttc gcccatgaga aggatcttgc cgacagcagg aggaaatggc cccacagacg       780
     gccattacta cagtcacgcc gcgcagatgg cggaacggat ccgaaagtgg ggaatccagt       840
     tcgacgggca ggacgaccca ctgtcgttcg tcgaactact ggaagagcgt gccctctcgt       900
     acggggtaga catgaactac gtgccgcgag ccatggcaga gctcctcacc gaccgagcca       960
     accgttggtt ccgcaccagc cgactccaga gcgcctcatg ggccgatttc cgccaggaat      1020
     tcctagcctt tttcctgcct ccccggtact tcgagcaatt ggaagaccag atcagggacc      1080
     gcaaacaagc ggtgggcgaa ccgttcaagg acttcgtcat cgagctccgg ttgctcatgc      1140
     accacgccgg gtacgacgaa gccaaggaac ttagccggat ctatgacaac accctcccgg      1200
     cgtaccagct gtacgtgcga aggcacgaac tgagaagtct gacgcaatta acaatgttgg      1260
     ccacagagtt cgagagcatc caggaacgga acgtaccagc gaccctcatc ccccctcgac      1320
     aaccacccag gtacacgcgg ccaacggcac aacaaaacga aagcgggacg aatcgggccc      1380
     aattccgaaa gccccactgg aacacctcgg aacccgcaag gaagccgcac caagccggcg      1440
     cttcagcaca ggaagcgaca catcgaatga tcaccacccc catcgccaac ccgcacgcag      1500
     cctgtcgacg ctgcggagaa gcgggacatg tatctcgcga ctgcaccaac ccatcgatcc      1560
     tcttctgttg ggaatgcggc aagcgcggaa cacgcaccgt gggctgttgc cgccaggacc      1620
     cgtcgggaaa cgactcgcgt ccccagctga cacgggaaca gccgggcacg acgcttcctc      1680
     agaaaaccaa ctaagaaacc cgctacaagt acacgacggc cggatagtgg cgagagtgac      1740
     catcggagga cggcgcacgg aagccacggt cgacaccggg gcgtcccgaa gtttcatcaa      1800
     cgccgacctc gcccgccaac tcggccacga caacgacctg cgcgacgctt gcgtcccgat      1860
     acgcctagcc gacggctcgg cacgcgagat aactcagatc ttgctagcgc gcgtcaaact      1920
     agacgagcaa gaggtacaga tgccgctctt ggtgctgccc aacatgctag agcaagccat      1980
     catagggatg gatttcctgt gcgccatcga aaccacaata caatgtggca ccacacgcct      2040
     ccatctccaa ggctcccaac gccccctccc aaacacgccg atgatcaccg ccagccaagt      2100
     acacgcccac ggacccaaga acttgagacc cccgccgcca acgaatcccc cgccacgaca      2160
     cgagacacga gcacaaggaa caaggaacac agaacccatg gccacaacga ggcacaccag      2220
     ccccaggccc actccgagaa acccaaaacc aagcaaagca acgaagaaag cgagccggtc      2280
     tcccgagggc accgacgcgg ttccaccaac gatgggaaag gaacccagga cgcccctcca      2340
     gaagacaacc cggccccagc aacgacagcc gccacgcagc agccaggcgc tcgaggtacc      2400
     acctccgacc gccaccctgg cccacgaacg cgtcgacacc gccctcgacg cgaaaackac      2460
     ccccacgaca ccgaccgacc cgctactccc gcgtcctctc aggcaggaac cgggaggggc      2520
     gatcaccgcc gcacgaggca tcaatcggaa ccccgccgca cctggagccg acacaccatc      2580
     gatcgtcacc gacatcatgg aacgcctccc gggcaacacc tcgtacggcg ccggcatgcg      2640
     gcccagcacc acgcctggag ccatgtcggt gaacctcacc gcccaaacta gccgtcggtc      2700
     aaacgctacg accgcaatcg agacccgcac gttcgtacat cacgctgagt acaacgtcgc      2760
     gcaagcaccc cccaggacac acacgagcac cccacacctg agcgacgcac ccgccgtcgt      2820
     cgccggcata agcgaataca ctcgcgaagt cgaaccacca agcgcattcg acacaacgat      2880
     cctccccgag aaccccgact acacttgcga cccaggaatc gacgaaccac cggaggacga      2940
     ttcggaacga atctccgacc catggcctcc cgacatcgcg ccgagaatac aggaatttct      3000
     agacgaagaa ctgccgacac tcgcaggcct ccgagggacg acggatctaa cggaacacac      3060
     catcgtcatg agagacaacc gacccataaa acagcggtac tacccgaaaa atccagccat      3120
     gcggcggatc atcgatgaac aggtcgacca actgatagca gaggacctaa tcgaaccatc      3180
     ccggagcccc cacagcgcgc caatcgtcct ggtccgcaaa aaggacggga gatggcgcat      3240
     gtgtgtagat tatcggcagc taaacgagcg ttctatcccg gacgcgtacc cgctacccag      3300
     gatcaactac atactagagc gactccgaaa tgcccacttc atcacgaccc tggacctgaa      3360
     aaacgggtac tggcagatac caatggcccg cgacagccgg gaagccacgg cattcacgat      3420
     acccggcaga ggactatacc aatggaaagt aatgcccttc ggtttacact ccgcgggagc      3480
     cacgtttcaa cggaccctcg acgccgttat cggcgcagac atggaaccat tcgcgttcgc      3540
     atatctcgac gacatcgtca tcgtcgggaa aagcttccag gaacacctga acaacgtaaa      3600
     agaagttttc gcacgactgc gaaaggcaaa cctacggatc aacacggaca agtgcgcctt      3660
     cttccaacgc cggataaaat acctgggcca catgatcagc gaagaaggta tccacacgga      3720
     ccccgacaaa atcgcagccg taaaggatct gaggccgccg accaacctga aggagctacg      3780
     acaatgcgta ggcatggccg gttggtaccg cagatttgtc ccaaactttg ccaccgtggt      3840
     ccaaccaatg tcactgctgc tgaagaaagg gaaagcatgg acatggggcc aagaacaaca      3900
     agacgccttc gacgagctga aaacactgct caccaccgca ccagtactcg cctgcccaga      3960
     ctttaacgtc aaattttccc tgcagacgga cgcaagcaac cttggagtag gcgcggtcct      4020
     cacccaagag atcgaaggga aagagcgggt catcgcatac gtcagtcgac gcctcaacaa      4080
     ggcagaagaa aactactcgg ccaccgacaa ggaatgcctc gccgtcatct gggcgatccg      4140
     aaaactgcga tgctatctcg aaggctaccg attcgacgtc ataaccgatc atctcgcact      4200
     aaagtggctg aataccctcg agagccctta cggtagagta gcaagatggg cgctcgaact      4260
     acagcaatac caatacgacg tgcactatcg ggccggcaac cagaacgtag tcgctgacgc      4320
     gctgtcaaga caaccattgg agaccctctc ccgcatcgag gaggaagaca acacagcatg      4380
     cacctggctt aaacaaagga tccagcaagt ccaagacgaa ccccagaaat acccggacta      4440
     cacgcacgaa aacgggcagc tataccgcta tctaggacac ggagccgacg acgacgacca      4500
     cataccgtgg aaactatgcg tgcctaaaaa cggccgaacg agagtactcc gcgaatgcca      4560
     tgacgaacca acagcaggac acctcggcgt ccggaaaacc atcctgagga caacgcaacg      4620
     atattactgg ccaggactac accgagacgt acgacggtac gtgcagggct gcgtaagctg      4680
     ccagaagttc aaggccacac agcgcaaggc cgtgggcagg atgctcacac gcaaagccga      4740
     agaacccttc gccaccctgt gtgccgattt cgtcggacca ttaccacggt ccaagcacgg      4800
     gaacaccatc ttactggtct tcttcgacac tttctccaag tgggtcgaac tggtacccct      4860
     caagaaagcg acaacagcga acctcgaacg agccttcaga gaacgaatac tgagcagctt      4920
     cggcgtgccg aaactattcg tgtgcgacaa cggaacccag ttcaccagcc gatcgtttaa      4980
     aacattcctg cgaaccgcag gcgtggacct acaacacaca gccccgtatt gcccccaaga      5040
     aaacccgacg gagagagcca atcggactgt gaaaacgatg atcgcacagt tcgtcgacga      5100
     ccaccagaac acgtgggacg aactcctacc cgagatgaca ttggcgatca actccagcgt      5160
     ctccgagacg accggattca gccccgcttt cctcctgcaa ggaagagaac cccgactccc      5220
     cggcaccctt tacgacgaag tcacgcccgg gacagggagt acacaagaga cggccagcag      5280
     caaagcgacg agactaaaag aagtattcgc catcgtccga aacaacatcc agagagccag      5340
     ccaagagcaa gggagacatt acaacctccg ccggcgacta tggcgccccg ccatcggatc      5400
     attggtacta ctacgccaac accacctctc aaacgccgcc gagggcttcg cggcaaagtt      5460
     agctccgaag ttcgacggcc cctaccgagt caacagtttt ccatcgccaa acatcgccaa      5520
     attacaacat tgcgaaagcc ggaaacagaa gaccgcgaat atcaacgacc tgagagagtt      5580
     ccacgaccac gagcccgacg agcccactgg cctacacagg aatgctgaca tcgcggaaga      5640
     aaccaatgaa acagcaaccc gacgccccga ccgcggcacc gcagagtcgg cagaacccgg      5700
     ggcacccggc caagagagac aacgtcagcg aaacaccgac cggcggcgcc acgccaacaa      5760
     caacgcgagc gcaacaaacc cctcgaccac gaagtaaaca gacccgctaa cgaggcaagg      5820
     gacgagatga tcgcaagtcg gcggcgaccc caaaacgcac ccccggtgca acacggaaga      5880
     gagaagaaaa gcttgctccg caaatacgga cccgcagaac ggcttaaata gccgcaactc      5940
     tggctcccat caatcagtgc actctcacca gaagaaggcg aagccatccg agccaacaac      6000
     ccaccgccgc acgccccacg cacgggtctt cgtgactctc gtcggggaag aaaggggagg      6060
     gtgtaacgaa cccaaaaggg ttcgctacaa cgcctctccc aacgcccaat aaaaacccgg      6120
     ctactaaat                                                              6129
//
ID   Gypsy-12_DPer-LTR repbase;    DNA;    INV; 786 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-786
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1530-1530 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 786 BP; 232 A; 273 C; 161 G; 119 T; 1 other;
     tgcaacacct cgcccaaagt gatttactac acgaacaccc cccctccaca catagccacc        60
     gattgacacg cgccgtcttc ataacgctga ccaaacacac caggtcacgc ggacttccac       120
     cactccagac caagcaaccg gccaggcgca gtcttccggg ttcatcggct acaaaacgat       180
     gacaccgcgg aagcccacga caagcmccca acggcaaacc cgccagctcg ccaaaaacac       240
     gaagagacag aactaggtca acccgcgatc gccagaacgg cgaagtgcac cccgacgcgg       300
     aagtgcactt ccgaacccgc tgacacagcg cccattggcg tataaataga cgccgactgg       360
     aaaccagaaa gcaacttacg cagagatccg gctcacagta cggtcgttgt accaaaactt       420
     acgcagagac ccggtccgga gtacagacgc ggtacccgga acccaccaga agacatcggc       480
     gcccaattaa aaataagtca tttaaaccgc taagaaatac aataaagtgt caaatttgca       540
     aagtaaaaac acccgattgc gtaagttcac cccaatcagc cgaggcaccg acgtcgcccc       600
     accccgagtc cacacggtcg tttcatatac acaacgctag caacgcccgc ccgagccccg       660
     atccacctct ctacgacagg ccgccctccg acgccgccct taaggttcca tcacatttct       720
     acaaatttct tgtgaacaga cccctggacg tgactgagct tacctcagcc tgaaataggt       780
     ccatca                                                                  786
//
ID   Gypsy-12_DRh-I repbase;    DNA;    INV; 4893 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DRh_;
KW   Gypsy-12_DRh-LTR; Gypsy-12_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4893
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1573-1573 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1775-2197] - Reverse transcriptase
CC   Positions [3245-3721] - Integrase core
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..1046
FT                 /product="Gypsy-12_DRh-I_3p"
FT                 /translation="MSSWVYLAPKSELTKYTEEFGLGTAERSEDLRRLLAA
FT                 FAKKTDHTETVRQRLAELTEKYRREKSPAKETIPAIVVTREKEEIMDIKGA
FT                 SLGDETEGKTEIKMETEVIDRVRGWGIRYQGTTNPLEFLSKMEQWAGGYGI
FT                 RKDQLIQTMPFILEGIASDWWNTTPSRIVTWTQLRTELLEYFLPPRYEEQL
FT                 ENQIAQMKQRETEPVREYAMGLRKLMQFTKLSEEAKLDRVYRNSRSKIKLY
FT                 ARRAGFNSLTEFLKLAEEVEGIEAEDRTQASQPVQQLRPEICMRCGGTGHA
FT                 ARTCNNPPRLFCWVCGRNGTRTTECCRAGPGNAGGLSR"
FT   CDS           join(902..2947,2951..4810)
FT                 /product="Gypsy-12_DRh-I_1p"
FT                 /translation="MHALRRNRTCGTHVQQSTEAVLLGLWKKRYENHGVLQ
FT                 GRAGKRRRPEQIKLAAQAATKEPAAGEQLCCDGFQIVARIRVGNRTAKGIV
FT                 DTGASRSAISRNRYQDLKHQGKWCGARAEITMANGTTQKAIGEFTAEVQFG
FT                 GKLFSVTFMILTEVAGGILLGMDFLAGVHSTLRCGNLELEIREPGGEEDQP
FT                 ETNTEQEDTTGEPSEKEVQDFLETQRQVFEGMQGTSNITKHKIYLKDDKPI
FT                 KQRYYPRNPKQQAIINEQVNELLALGLIEPSRSPYSAPVVLVRKKNNEWRM
FT                 CVDYRLLNDKTEKDAYPVPRMNFILDQLREAKFISTIDLKSGYWQIPMDRN
FT                 SRQYTAFTVPGRGLFQWKVMPFGLTTAPATFQRALDSIIGPEMEPFAFAYL
FT                 DDIVVIGRSKREHLEKLTEVFRRLQNANLRINPDKCHFFQKELKYLGHVIS
FT                 DRGIRTDPDKVAAIRDLPAPRSTKEVHSFLGMASWYRRFIPNFTEQAGALQ
FT                 GLIKKGQKFEWTEEQQESFDQLKTSLTKAPVLACPDFTRQFKLQTDASDLG
FT                 VGAVLTQDGEDGEHVIAFASRRLSKVEKNYSATEKECLAIYWGINKYKMYL
FT                 EGYRFIVITDHMALKWLNSIESPSGRVARWALGLQPFQFEVQYRKGKWNAV
FT                 ADALSRTPQNELKTIQYTETWIEEKYKELERDPSTEFKIEAGRLYKLGGNR
FT                 RDTQPWKLCVTGAEIQQVLTENHSTAEAGHLGMFKTLRRVKNRYFWPRMNK
FT                 DVRKYVQKCECCQKYKVSQQKKAGKMLTKVAEAPWETICVDFVGPLPRSKH
FT                 GNTTLLVIVDKFSKWVELAAIRQATADAFLRVFRERVIARVGSPKTLISDN
FT                 GVQFTGGKTRKAMEKWGIRQQLTAPYTPQENPTERTNRTVKTMIAQLAGED
FT                 QTTWDEHLPELMLAYNSSVSESTRYSPAQLVFGKELRLPNTMFDRVTKGSG
FT                 LQEESIEQRWNRLKGVRKEATQHTEEAAEQQKHHYNLRKRDWKPDVGDLVW
FT                 CKTHYLSKAAEKFNAKLAPKYDGPWKVTNFVSPVIMAVKDPNTRKTKRVYI
FT                 GNTKQYVGTNTIQNEHRKLATHEEHDLSLNTTHNQTLHKCHYSTPHNSHNI
FT                 SHHTTPHPKRKPTLHHNHNTTLHPTPTLNVKPNTNICLITEKMNKFTEAAR
FT                 KFRDKHTKLRAAQTMAKFVEPIPMAGTARKRTAPAKMKTTAPTRSIQSGQG
FT                 NSQTAKTAQESRATETPDRDILELHEEEPNDEGWTLPEGAILSRTARNSIK
FT                 EKLAGKKPGRQQRWLIKDGETTWRVVSNRGNYVTIQHHSNP"
XX
SQ   Sequence 4893 BP; 1751 A; 1051 C; 1326 G; 764 T; 1 other;
     gtggcgcccg agcaggttaa agtggttgca agagataaac cgacaccagc ggagtaatgt        60
     cgagctgggt atatctggca ccaaagagcg aactaacgaa atacacggaa gagttcggat       120
     taggaacggc agaaagaagt gaggacttaa gacgtttgtt ggcagcgttc gccaaaaaaa       180
     cggatcatac ggaaacggtc agacaaagac tcgcagaact gacagaaaaa tataggagag       240
     aaaaaagccc ggcgaaggaa acaattccgg cgatcgtggt aaccagggaa aaggaggaga       300
     taatggacat caaaggagca agtctagggg acgaaacgga aggaaagaca gaaataaaaa       360
     tggaaacaga agtcatagac cgggtacgcg gatggggcat ccggtaccaa ggaacaacaa       420
     acccactgga gttcctaagc aaaatggaac agtgggcagg cggatacgga atacggaagg       480
     accagctgat acagacgatg ccattcatcc tggaggggat cgcgagtgat tggtggaaca       540
     ccacgccgag caggatcgta acatggactc agctcagaac agaactgctg gaatactttt       600
     tgccgccgag gtatgaggaa cagttggaga atcagattgc acagatgaaa cagagagaaa       660
     cggagcccgt aagagaatac gcaatgggac taagaaaact gatgcaattc acgaaactct       720
     cagaggaggc caaactggac cgagtgtaca gaaacagcag gagcaagata aagctgtacg       780
     ctaggagggc aggattcaac tcgttgacag agttcctcaa actagcggag gaggtagaag       840
     gaatagaggc agaggaccgg acacaggcaa gccaacctgt gcagcagcta agaccggaga       900
     tatgcatgcg ctgcggagga accggacatg cggcacgcac gtgcaacaat ccaccgaggc       960
     tgttttgctg ggtctgtgga agaaacggta cgagaaccac ggagtgctgc agggcagggc      1020
     cgggaaacgc aggaggcctg agcagataaa gctggcagct caggcggcaa caaaagagcc      1080
     agcagcaggg gaacagttgt gttgcgacgg gttccaaata gtagcccgga taagggtcgg      1140
     aaacaggaca gcgaaaggaa tcgtggacac aggagcatca aggagcgcta taagcagaaa      1200
     cagatatcaa gatctgaaac accagggcaa atggtgtgga gcccgtgcag aaataacaat      1260
     ggccaacgga acaacgcaga aggcgatagg agaattcacg gcagaagtcc aatttggagg      1320
     aaaattgttc agtgtgacgt tcatgatact gacagaagtg gcaggaggaa tactgctagg      1380
     gatggacttt ctggcggggg tacacagcac gctgaggtgt ggaaacttag agctggaaat      1440
     aagagagccc ggaggcgaag aggaccaacc ggagacgaat acggagcaag aagacacgac      1500
     aggggaaccg tccgaaaagg aagtacagga ctttctggaa acgcagaggc aagtatttga      1560
     aggaatgcag ggaaccagta atataacaaa gcataagatt tacctcaagg atgataaacc      1620
     gattaaacag aggtactatc ctcgaaatcc aaaacagcag gcgatcatca atgaacaggt      1680
     gaacgagttg ttggcactgg gactcataga accctcacgt agcccgtaca gcgcgccagt      1740
     agtgctagtg agaaagaaga acaacgaatg gagaatgtgt gtggactatc gactactgaa      1800
     cgacaagaca gaaaaagacg cctatccggt accaagaatg aatttcatct tggaccagtt      1860
     aagagaggca aagttcatca gcacgataga tctcaagtca ggatactggc agatcccaat      1920
     ggataggaat agtagacaat acacggcatt cacagtcccc ggacgtggac tgttccagtg      1980
     gaaggttatg ccatttgggc taaccacagc tccagcaacg tttcaaagag cactggactc      2040
     aataataggg ccagaaatgg aaccgtttgc atttgcatat ctggacgaca tagtggttat      2100
     tggccggagc aaacgtgaac atctggagaa gctaacagag gtattcagga gactacagaa      2160
     cgcgaacctg cggattaatc cagacaaatg ccacttcttc caaaaggagc taaagtacct      2220
     gggacacgtc ataagcgatc ggggcattcg gacagacccg gacaaagtag cggcaattcg      2280
     agacttacca gcgccgagat ccacaaagga agtacacagc tttttaggaa tggcatcatg      2340
     gtaccgacgg ttcataccaa atttcaccga acaggcagga gcgttgcaag gcttaatcaa      2400
     gaaaggacaa aaatttgaat ggaccgagga acaacaggaa tcgtttgacc aactgaaaac      2460
     gagcctaaca aaggcaccgg tactggcatg ccccgatttc acaaggcagt ttaaactgca      2520
     aacggatgcc agcgacttag gcgtaggcgc ggtcttaaca caggacggag aggacgggga      2580
     gcatgtgata gcgtttgcca gcaggaggtt gagtaaagta gagaaaaact acagcgcaac      2640
     cgaaaaagaa tgcttagcaa tatattgggg catcaacaag tacaagatgt acctagaagg      2700
     ctatcggttc atagtgataa cagaccacat ggctttgaag tggctaaact caatagaaag      2760
     cccgtcggga agagtggcca gatgggcgct aggcctacaa ccattccaat ttgaagtcca      2820
     gtacagaaag ggaaaatgga atgcggtagc agacgcctta tccagaacac cacagaacga      2880
     gttgaaaaca atacagtaca cggagacatg gattgaggaa aaatacaagg aactggaaag      2940
     agacccamaa agcacggaat tcaagataga agcaggcagg ctatataaac tgggtggcaa      3000
     tcggagagac acacaaccat ggaaactgtg cgtaactggg gctgaaattc aacaagtatt      3060
     aacggaaaac cacagtacag cagaagcagg acacctgggc atgttcaaaa cactgagaag      3120
     ggtgaagaac cgatatttct ggccacgaat gaacaaggac gtaaggaaat acgtacagaa      3180
     atgcgagtgt tgccaaaaat acaaggtatc gcaacagaaa aaagctggga agatgctgac      3240
     aaaagtggca gaagcaccgt gggaaaccat atgtgtggat ttcgtgggac ctctacccag      3300
     atcaaagcac ggaaacacca cactattagt aatcgtggac aaattctcga agtgggtgga      3360
     acttgcagca atccgacagg ctacagcgga cgcattccta cgagtcttta gagaaagggt      3420
     aattgcgaga gttggatcgc caaaaaccct gatctcagat aatggggtcc agttcacagg      3480
     aggaaaaaca agaaaggcca tggaaaaatg ggggatacgg caacagttga cggcaccgta      3540
     cacgccccag gagaacccta ccgagcgaac gaatcgaaca gtcaaaacga tgatcgcgca      3600
     gctagcagga gaggatcaga ccacgtggga cgaacattta ccagagttaa tgctagcata      3660
     caatagcagt gtatcggaat ctacaagata tagccctgcg cagctggtat tcgggaaaga      3720
     gttaagatta ccaaacacga tgttcgacag ggtaacaaag ggatcggggt tacaggagga      3780
     aagtatagaa caaagatgga acagattaaa aggcgtgcga aaggaggcaa cacaacatac      3840
     ggaagaagcc gcggaacaac aaaaacatca ctacaatctg cggaaaaggg attggaaacc      3900
     agatgtcgga gacttggtat ggtgcaagac gcactatctg tcaaaagcgg cagaaaaatt      3960
     taacgccaaa ctagcaccaa agtacgacgg cccctggaag gtaaccaatt tcgtgtcacc      4020
     agtgatcatg gcagtgaaag acccgaacac acgaaaaaca aagagagtat acatcggaaa      4080
     caccaaacag tacgtaggaa caaatacaat acagaacgaa caccgtaagc tagcaacaca      4140
     tgaagagcac gatctatcat tgaatactac acataaccaa acactacaca aatgccacta      4200
     ctccacacca cacaactcac ataacattag tcatcacact acaccacacc ccaaacgtaa      4260
     accaacacta caccataacc ataacacaac actacaccct acaccaacac taaacgttaa      4320
     gcctaacaca aacatttgtc tcattacaga aaagatgaac aaattcacgg aggcagcgcg      4380
     gaaattccgg gacaaacaca caaagttacg agcagcgcag actatggcga agttcgtaga      4440
     gccgataccg atggcgggaa ccgctcgaaa gaggacggca ccggcgaaga tgaagaccac      4500
     ggcaccaacc aggagcatcc agtccgggca aggcaacagc caaacagcca aaaccgccca      4560
     ggagagccga gcaaccgaga caccggacag agacatccta gagctccatg aggaggagcc      4620
     caacgacgag ggatggacgc taccggaggg agcaatactg tccagaacag caagaaacag      4680
     catcaaggag aagctagcag ggaagaaacc cggaaggcag cagcgatggc tgataaagga      4740
     tggagaaacg acctggcgag tggtatcgaa tagagggaac tacgttacaa ttcaacacca      4800
     ctcgaatcca tgacgggggg gagtgtgacg ctgcgcgcac aataaaagca tgaataaatg      4860
     aataaatgaa taaaaagaat aaaaagtaaa cgt                                   4893
//
ID   Gypsy-12_DRh-LTR repbase;    DNA;    INV; 1070 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DRh_;
KW   Gypsy-12_DRh-I; Gypsy-12_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1070
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1574-1574 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1070 BP; 253 A; 335 C; 237 G; 244 T; 1 other;
     ttgtgacgct gcgcgcacaa aaagaagtat ttaatttcaa attcaaaccg agaacgcgcg        60
     cgcgccaacg atcgcgcata taggggcaca ctagaccgag agagagatgg tcacacttag       120
     cccggcaaat cccacagacg acgggcacac tagatctcgc cgagccctat ataagacggg       180
     ccacgggcca tggaaaggca cttagcagcc aaccgtctaa gggtgcagag gcaactcccc       240
     agtggtggta agcagcaaag tcattttttg gtggactaga tcattcgatc caagtccgct       300
     ttatacattg tagttagctc ccgtactact tcctcctccc tctaaccttc ccggcttgcc       360
     gatctgaagg tatccctagg agacgtctga ttttaggatc acacctcctt acggcacggt       420
     tcaccggctg acttctctct ctcttgcggc tgacctcagg gtccccaagg gccgacctca       480
     gggtccccaa gcactctctc tctcttgcgg ctgacctcag ggtccccaag caactctctc       540
     tctcttgcgg ctgacctcag ggtccccaag caacatctct ctctcttgcg gctgacctca       600
     gggtccccaa gcaacattct ctctctcttg tggctgactt cagggtcccc aagcaacatt       660
     ctctctcttg cggtcgactt tcgggtcccc aagcactaaa tagatctctc tcgctcgtgg       720
     ccgacttcag ggtccccagg caccctattc tcatttcagg taacccaacc cgtgctggtc       780
     ctatcgagca gctggacggc tcccgagacc aggtattcta agcgtaagaa ggaagcgaag       840
     gctgcaaggg cggcaccccg ccaatccgga gaattcgtta gttgttaatm aattgtcaag       900
     atacttactg aaataaaaac ctagttctaa ttcaattact aagtaattcc ccacgacttc       960
     tactctgggc tgggtcggaa ctctctttca gcaaccacgc ctgacacaaa caaattcttg      1020
     tgacgaaccc tggccatccc tgagccaccc gacaacgacg aaccgtcaca                 1070
//
ID   Gypsy-12_DSer-I repbase;    DNA;    INV; 6835 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-12_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6835
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1972-1972 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..2115
FT                 /product="Gypsy-12_DSer-I_1p"
FT                 /translation="MSSPFQQYRENKPYASDSESDSEGPPRTNPTVGTMDP
FT                 DQLKAIIQAAVNHALAERVNKERELRQAIEQLAAQVAAVQVAPAQTEAPKI
FT                 KVYEPIDIKGNVQCNEPLDAVKCLPEFTGAQETYVSWRQAAVAAYYIFRNY
FT                 VNSSRHYQAVVIIRSKIRGPADAVLSSFGTILNFDAIIDRLDFTYSDKRQI
FT                 HVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYEASAARVLCEKF
FT                 RDDALRVFISGLKRSLSDVLFSAKPKDMPTALALAQEVESNHERYTFAASF
FT                 AKSLEDRDKKQVPKAQDRQQTPYQGHSQVSAGKNPHFTKQHKAQVHSAPSS
FT                 DRRRENTPEPMDVDPSVSRMLKPSQAPAYQNRKPAGSDRSGPHKRQRVNHI
FT                 AQGPNEPEGYTAAASSAAQEISDDAVHEYDSDAINFLGENPCYPSSDEE"
FT   CDS           2073..5168
FT                 /product="Gypsy-12_DSer-I_2p"
FT                 /note="retropepsi, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFRGKSLLPVIRRRVAGVEMRLLIDTGAAKNFIRPYE
FT                 GLKGVRPVESPFTIHSIHGVTNITKKCYVSLFNLKATFFILPDLSSFDAII
FT                 GLDLLKQAGASLCLASGHLKWGSEVEKLEFQSCPDVNFTNIDCSDAPPLVR
FT                 EAFTKMLGERKKAFANPNEALPYNTSVVATIRTVSEEPIYAKLYPYPMGAA
FT                 DFVNSEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDEAGNRKMRLVLDFRK
FT                 LNERTIPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLAERDREKTS
FT                 FSVNGGKYEFRRLPFGLKNAASIFQRTIDDILREQIGKFCYVYVDDVIVFS
FT                 EDENAHIRHVDWVLKSLHDANMRVSAQKSRFFKKSVSFLGFIVTNKGATTD
FT                 PEKTKAIQEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISEILKGEH
FT                 GSVSRHRSKNIQVQFSEQQRLAFHKLRNILASEDVILSYPDYKKAFDLTTD
FT                 ASAFGIGAVLSQEGRPITMISRTLKDREVNYATNERELLAIVWALAKLRHY
FT                 LYAVRDINIYTDHQPLTFAVSESNPNAKIKRWKARIDESGAKMFYKPGKEN
FT                 LVADALSRQQLNVLGEEEAFSSAATIHSELSLTHTIETTDKPLNCFQNQIT
FT                 LEEARFPSKRSFVLFGNKRRHSIDFTCKESLLDELADIIVPKGVNAIHCDL
FT                 HTLAMIQDELVRQFPATKFWHCKNRVTDIFAVAERREVLTVEHNRAHRSAQ
FT                 ENVKQVLSEYYFPKMAKLAAEIVANCRTCARAKYDRHPKKHELGETPLPSH
FT                 VGEMLHIDIFSTDKKYFLTCIDKFSKFAIVQPIPSRTIEDLKPALLLLMNV
FT                 FPKAKVIYCDNEPSLNSHTILTMLENHFGVSVSNAPPLHSVSNGQVERFHS
FT                 TLVELARCLKIDKGISDTVELILLATARYNKSIHSVIDKRPADVIQTQSEE
FT                 PLYEVRDRIRIAQDKLRNRENASRQNRVFEVGEKVLVKSNRRLGNKLSPLC
FT                 EEKVVEADMGTTVLIKGRVVHKDNLR"
FT   CDS           5328..6833
FT                 /product="Gypsy-12_DSer-I_3p"
FT                 /note="env."
FT                 /translation="MLVVGFLNFAKHYNKSENYRFTPIPLLFLLTLTSAHV
FT                 TDYSQAKYIPIVDGRILIWEEFAFVRHTANLSEYRRVVEETNDMIHMFPQS
FT                 HMQKLLSVDVAHLRDLLESLSIHHRVARSLDFLGAALKVVAGTPDAEDFEK
FT                 IRLTEFQLINANNRQVNINSRVQEQINNITITVNQILRSAKESQIDSGHLY
FT                 EMLLSRNRMITMELQNLLLAIALAKVNVVSPSILDHADLESMWIEEPTDTP
FT                 IKDILSVSSVKVLQSTNIIHFIIKFPKIKSACVKITIFPVSHHDTMLRLED
FT                 KVIADCDGEIHTVKNCSVSSGATFCQLALRRSCAQELHAGGIAHCDIQHSD
FT                 LHPVTYVDEGILIINDRPARVSVDNGTYVHLQGTHLITFIESATVNETRYI
FT                 NHDMAQKRAPGVASSPSLNISLEHDILSLPYLHRLSERNLEHIKRFGEDIN
FT                 NYRSHQIVLVAGAVCCALICIGLTYRRVTQARRSTAQLKEVIAQIGSAEGG
FT                 LNLEGG"
XX
SQ   Sequence 6835 BP; 1967 A; 1675 C; 1538 G; 1655 T; 0 other;
     ggcgcccaac atttagaagt acccacaatt acaaattggg gaaacatgta agtgagcacc        60
     tcttacttta tactttcctt tctgcattag agtagcttga aacctaatga aataaatcgc       120
     tgccagaata acttctgcag ctccacctta atatatttgt gttaacttta ttataaataa       180
     agattaatta acccataatt tgtttgacaa tttaatggtg aattatattt gctacaataa       240
     tatttgttct gtgctgtctg tgtattgttt gcattttttt gccaaaaata ggtacggata       300
     ttagatattt cagcctaagc gctaggccgc cgctaacgaa caaattagtt gtgaatttat       360
     ttaaaattat ttttcactat atatcggcgg ttaattctgc cgtttggata ttcataaatt       420
     gtgaatttat ttattttatt cattgtgtct ttttgcttag accctaaatt cttagtattt       480
     gcctcgcaat acattatttt ttattgcccc cactccactg ctgggaaccc gatactgctg       540
     catatgcatt tgtgtggcaa attgtcgtta tttgtttctt tgtttctcat agcggaggct       600
     cagtccccgc atacccctga ccctatcgct gcttgacagg gcaccggctc gattcgacga       660
     gctcagaaac tttgttgcca aagcggcggc tccgtccccg cacacccctg gccatgacaa       720
     ttgccttcat gggcagaata gcttgagcaa gcattcccct accagtgcga tttagcttgg       780
     ccacatatga gctccccatt ccaacagtac cgggaaaata aaccatacgc tagtgactca       840
     gagtctgata gtgaagggcc cccgcgtact aaccccacag taggaactat ggacccagat       900
     cagcttaagg ctataattca ggccgcggtt aaccatgcct tggcggaaag ggtcaacaaa       960
     gaacgggaat tgcgccaagc catagagcag ttggccgccc aagtggcagc ggtgcaagtc      1020
     gcacccgcac aaacagaggc tccaaaaatc aaggtttacg agcccattga tatcaaaggc      1080
     aatgttcaat gcaacgagcc tttagatgcc gttaaatgcc tgcctgaatt tacgggggca      1140
     caggagacat acgtctcttg gcggcaagcg gcagtagccg catattatat ttttagaaat      1200
     tatgttaata gctcacgcca ttatcaggcg gtagttataa ttaggagtaa aattaggggc      1260
     cctgccgatg cagtgctatc ctcgttcggc actatattga attttgatgc gattattgac      1320
     cgcctcgatt tcacatatag tgacaaacga cagattcacg tcatcgagca ggagatgggt      1380
     accctcagac agggaagcct cacgctcctg cagtactatg acgaggtcga gaaaaaactc      1440
     accttgctca ctaataaggc aactatgtcg tacgaagcat cggcggcaag agttttatgc      1500
     gaaaaattcc gggacgatgc gctccgcgtt tttatttcgg gcctcaagcg cagcctctcc      1560
     gatgtcctct tctcggcaaa gccgaaggac atgccaactg ccttggcgtt ggctcaagaa      1620
     gtggaatcaa accacgagag gtacaccttc gcggcatcgt tcgcaaagag cctggaggat      1680
     agggacaaga agcaagttcc aaaggcgcaa gatcgccagc aaacgcccta tcaagggcac      1740
     tcccaagtga gtgcgggcaa aaacccgcac ttcaccaaac aacacaaggc ccaggtgcac      1800
     tccgctccga gcagcgacag gcgtcgtgaa aacacgccag agcccatgga tgttgaccct      1860
     tcagtgtcta ggatgctcaa gccatctcaa gcgccggcct accagaacag gaagccggcc      1920
     ggatccgacc gatccggccc gcacaaaagg cagagggtaa accacattgc tcagggccca      1980
     aatgaacccg aaggttacac cgccgcagct tcaagcgcgg cacaggaaat aagtgacgat      2040
     gctgtccacg aatacgattc ggacgcaatt aattttttag gggaaaatcc ctgctacccg      2100
     tcatcagacg aagagtagcg ggggtggaga tgagactttt aatagatacg ggcgcggcaa      2160
     aaaatttcat ccgtccatac gaggggttga aaggcgtccg cccggtagaa tcgccattca      2220
     cgatacattc gatccatggc gtcaccaata tcaccaaaaa gtgctacgtt tccctattta      2280
     acttgaaggc cacgttcttc attttaccag atttgtcctc ctttgatgcc ataattggtc      2340
     ttgacctgtt aaaacaggca ggggcatcgc tttgtctagc ttccggccac ctcaaatggg      2400
     gctctgaagt agagaagttg gaattccaat cgtgtcccga cgtcaatttt actaacattg      2460
     attgctcgga cgcgccgcct ctagttagag aggcctttac caaaatgctt ggcgaacgaa      2520
     agaaagcctt tgcaaacccc aacgaggccc tgccttacaa cacgtcggtg gtagctacca      2580
     tcaggacggt aagcgaggag cccatttatg ccaagcttta cccataccca atgggggctg      2640
     cagatttcgt caacagcgaa atccaagagc tgctgaaaaa tggcattata caaaagtcaa      2700
     agtcccccta caataaccca atatgggtag tagacaagaa gggcactgac gaagcgggca      2760
     accgcaaaat gcgactcgtg ttagactttc gcaaattgaa cgagaggacg atacccgacc      2820
     gctaccccat gccaaatatc tctatgatac tagggaattt aggcaaagcc aaatacttca      2880
     cgacacttga tctgaagtca ggctaccacc agatcactct ggcagagcgc gaccgcgaaa      2940
     aaacttcctt ttccgttaac ggagggaaat acgaatttcg tcggcttcca tttggtttga      3000
     agaatgctgc cagcatcttc caaagaacca tcgacgacat actgcgagag cagattggca      3060
     aattttgcta tgtctatgtc gatgatgtca tcgttttctc agaagacgaa aacgcccaca      3120
     tacggcatgt ggattgggtt cttaagagcc tgcacgacgc caacatgagg gtgtcagcac      3180
     aaaaatcgcg tttctttaaa aagagcgtta gttttttggg attcattgtc actaataaag      3240
     gtgccacaac tgacccagaa aaaaccaagg ccatacagga attccccgaa cccaaaaatg      3300
     ttttcgaggt gagatcgttc cttggcctgg ccagctatta ccgatgcttc atcaaagatt      3360
     tcgcatcaat agctaggccc atatccgaaa ttcttaaagg ggagcatgga agtgtcagta      3420
     ggcacagatc caagaatatc caggtgcaat ttagcgagca gcaacggctt gctttccata      3480
     agttgcgtaa cattctggct tcagaggatg tcatcctcag ctatcccgac tacaagaagg      3540
     cgttcgatct aacgacggat gcctcggcat ttggcatcgg cgcggtacta tcccaagagg      3600
     gaagacccat tactatgata tctaggaccc taaaggaccg agaggttaac tacgctacta      3660
     acgagcgtga actgttagcc atagtttggg cactggccaa attacgccat tatttatatg      3720
     cagtaagaga tataaatatc tatactgatc accaaccgtt gacattcgca gtatcggaat      3780
     ccaatccgaa tgcgaaaatc aaacgatgga aagcccgcat cgacgagtcc ggcgccaaaa      3840
     tgttttacaa gcccggaaaa gaaaacctcg ttgcggatgc cctctcaaga cagcaactta      3900
     acgttctggg agaggaagaa gctttttcca gcgcagccac aatccacagt gagctgtcgc      3960
     tcacccacac aatcgaaact acggataagc ccctgaattg ctttcaaaac cagataactc      4020
     tggaggaggc acgctttccg tcgaaacgca gcttcgtact ctttggaaac aagagacgac      4080
     atagcatcga ctttacttgc aaagagtcat tgctcgatga gctcgcagat atcatcgttc      4140
     ctaaaggcgt aaacgccatt cattgcgact tgcatacgct ggcaatgata caggacgaat      4200
     tggttcggca attcccagcc accaagtttt ggcactgcaa aaaccgcgtg acggatattt      4260
     ttgcagtcgc tgagaggcga gaagtcctca ccgttgagca caacagggct cacagatcgg      4320
     cccaagaaaa tgtgaagcag gtactctcag aatactactt cccaaaaatg gcaaagctag      4380
     cggccgaaat cgtcgctaat tgtaggacat gcgctagggc gaaatatgac aggcacccca      4440
     aaaagcatga gcttggcgaa acaccgctcc catctcatgt aggagaaatg ctacacatag      4500
     acattttctc cacggacaag aaatatttcc tcacgtgcat tgacaaattc tcgaaatttg      4560
     ccatagtcca accaattccc tctagaacca tagaggacct aaaaccggca ttactactgc      4620
     tgatgaatgt tttccccaaa gccaaggtca tatattgcga caacgaacca tcgttaaact      4680
     cgcacaccat tttgaccatg ctggaaaacc atttcggcgt tagcgtttca aacgcaccgc      4740
     ccctccacag tgtctcaaac ggacaggtgg agcgcttcca cagcactctg gtggaactcg      4800
     ccagatgcct taaaattgat aaaggcatca gtgacaccgt cgagctaatt ttactggcca      4860
     cagccaggta caataaatcc atccattcgg tcatcgacaa gaggccagct gacgtgattc      4920
     aaacacagtc agaagaacca ctgtatgagg ttcgggatag gattaggatc gcccaagata      4980
     agctcaggaa tagggaaaat gcttcccgac agaacagggt gttcgaagtt ggcgaaaaag      5040
     tcctagtaaa atccaacagg cgactaggca acaaactctc tccattgtgt gaagagaaag      5100
     ttgtggaagc ggacatgggg accacggtcc tcattaaggg gagggtggtc cacaaggaca      5160
     accttaggta gacgaagcgt ggtcatgttg acttgattcg tctgataatt ttttaccaac      5220
     ttttttcata tttttattcc tagccacttg gcataaggtt ttttattttt attttttatt      5280
     tgtcattatc attacttttg cttaagcttt ccgtgcttta tttttatatg ttggtggtgg      5340
     gcttcttgaa ttttgcaaaa cactacaata aatccgaaaa ttacaggttc actcccattc      5400
     ctctgttatt ccttctgacc ctaacatcgg cacacgtcac ggactactcg caagccaagt      5460
     acattcccat cgttgatggt cgaatattaa tatgggaaga atttgcattt gtgagacaca      5520
     cggcaaatct ctcagaatac aggcgcgtgg tggaagagac taatgacatg attcacatgt      5580
     ttccccagtc gcacatgcag aaacttttga gcgtagatgt cgctcacctg cgtgacctgc      5640
     tcgagtcact gagcatccac cacagagtag ccaggagttt agacttcttg ggagcggcgt      5700
     taaaggtagt ggcgggaacg ccagacgcag aggattttga aaaaatcaga ctaacagaat      5760
     tccaactcat taatgcaaac aatagacagg tcaatattaa cagtagagta caggaacaaa      5820
     taaataacat taccatcact gtcaatcaaa ttctgaggtc ggctaaagaa tcccaaattg      5880
     attcgggaca cctatacgag atgttattgt ctcggaatag gatgattaca atggagctgc      5940
     aaaatttatt gcttgcaata gcgctcgcca aagtcaatgt agttagccct agcatattag      6000
     atcatgcaga cctggaaagt atgtggatag aggagcccac agataccccc atcaaagata      6060
     tattgtccgt ttcgtccgtt aaagttttac aatccactaa cattattcat ttcattatca      6120
     agtttcctaa aattaagtca gcctgcgtta agattacaat ttttcccgtg tcacatcacg      6180
     acacaatgct cagactggag gacaaggtca tagcggattg cgacggagag atccacacgg      6240
     taaaaaactg ctccgtgtca tcaggggcca cattttgcca actggcgctg agaagatctt      6300
     gcgcccagga actccacgcg ggaggcattg cgcactgcga tattcagcat agtgatctgc      6360
     atcccgtcac ctatgtcgac gagggaatcc tcatcataaa cgatcgcccg gctcgtgtga      6420
     gtgtggacaa tggcacttac gtccacttac aaggaacaca ccttatcacc ttcatcgaga      6480
     gtgccacggt taacgaaacc cgatatatca atcatgatat ggcccagaag agggcaccag      6540
     gagtagccag ctcaccttcc ctgaacattt ctctagagca cgatatacta agcctcccat      6600
     accttcaccg cttgagtgaa cgtaacctgg agcacatcaa gagatttggg gaagacatca      6660
     acaactaccg ctcgcaccag attgtgctag tcgcgggagc agtttgctgc gcgttgattt      6720
     gtatcggcct cacttatcgg cgagtcaccc aggccaggag atccacggcc caactaaagg      6780
     aagtgattgc ccaaataggg tcggccgagg gcggccttaa tcttgagggg ggagt           6835
//
ID   Gypsy-12_DSer-LTR repbase;    DNA;    INV; 447 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-447
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1998-1998 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Inserted in (TA)n microsatellites.
CC   TSDs may be 4-bp long.
XX
SQ   Sequence 447 BP; 126 A; 122 C; 92 G; 107 T; 0 other;
     agttaactaa gttaaccggg cgacggcaat gaccgatcgt ccgaaagctc gctccggcca        60
     aattgctgac ccagcgtctg gccggaagct cgtgcatagc cggcaagcac tgcccattgg       120
     agtggccgct atgaatatca cttttgttag ttcttaagtt cagttctgtt ttgacactta       180
     tgaaataaag agccatcgct ctcatactgt aactccgacg atccgtcgta aagcatttat       240
     tattacaaat ctgactgagt ccctaggcca gcagataaag agggacagtc atccctccaa       300
     cataatcatc ctaactaaat attctacggc cagccggcta gaagacacca aagggcctct       360
     cgccccgacc ttacatctcc aggaacaatc cgcggcggaa ttgaaattgt cgacgacgaa       420
     tcattaccgc ccaacattat attaatt                                           447
//
ID   Gypsy-12_DSim-I repbase;    DNA;    INV; 4783 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4783
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1531-1531 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. The 3' end is uncertain. ~88%
CC   identical to Idefix-I from Drosophila melanogaster.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..1299
FT                 /product="Gypsy-12_DSim-I_1p"
FT                 /note="Gag."
FT                 /translation="MSVPQLSEIHLNQLLNQIKELNHYDGTPGRLSGFVNQ
FT                 VEQLLNLYPTQDARQAHVVYGAVKRLLVDAALEVVTQERATTWMEMKEALA
FT                 MAFKDHRPYTTIIKQLEETPYPGSISKFIEKLEIQYWIIFDKLELENDPVD
FT                 KSNYTDMLNRTVKTVIDRKLPDRIYMTLARKDIDTIYKLKQASMEVGLYDA
FT                 SPENHRPNRSEVNKHRNRGNNNQNNYQKYYSNRNQNYYHSGMNPSNNTQPP
FT                 QNSNQFIPNQNQYSPRPIPNHLRGNYHTYRRDLTQAQQNNPLNFQPSTSNN
FT                 FNNNKPIKRQRESQSDQYRMDVNFHQAASDTQVKEKDTPVPM"
FT   CDS           1221..4676
FT                 /product="Gypsy-12_DSim-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="PVQNGCKFSSSCLGHSSEREGHTSPYVEISYHNKIYK
FT                 GMIDTGSSINIIRENFENIEENEENLTVYTIKGPIKLKKSIIIKPTSVCPS
FT                 VQKFYIHKFSDNYDFLLGRKYLEDTKAKINYDNNTVILGSKTFKFLYDEKK
FT                 GETASKCLDPQQKIDSAPVEKINPKMQKVKTTSKGLKPKRQQQKKETASSK
FT                 CLISNVVSDTVDNDVTHLDSMSVDDDIVNFAINNELRECNEYRLEHLNAEE
FT                 VECLKKVLYEYRDIQYKEGENLTFTSTIKHVIQTQHEDPVYRKPYKYPQSV
FT                 DQEVNKQIKEMIEQGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRN
FT                 LNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQIQMDENSIAKTA
FT                 FSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYS
FT                 TSLEEHILSLKKVFEKLREANLKLQLDKCEFMKKETEFLGHIVTTNGIKPN
FT                 PNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFAKIVKPMTLKLKKGA
FT                 VIDMKCKDYIESFERLKVLITSDPILIYPDFSKPFSLTTDASNVAIGAVLS
FT                 QNHKPVCYASRTLNEHEINYATIEKELLAIVWATKYFRSYLFGRPFEIMSD
FT                 HKPLVWLNNIKEPNMKLQRWKIKLNEFDYKIKYLPGKENYVADALSRTKIE
FT                 EVMVGEVANSADATIHSANEDNLNYISITERPINFFSRQIEIEKGDSDTTS
FT                 VTHFFQKLKIKIIYKEMTLEFAKNLIKEYVCTKKSAIYFPNDEDFLIFQRA
FT                 FTEIISPNNFTKLLRCTTKLIDILTYAEFKDLILKKHKELLHPGIEKTVNW
FT                 FKEKYYYPDSQKLIQNIINECEICNLAKTEHRDTKLTYETTPEIFNTREKY
FT                 VIDFYLTGNQIFLSCIDIYSKFASLVEVKSRDWLEAKRAITKIFNDMGKPQ
FT                 EIKADKDSAFMCIALQNWLRSEGVEISVTTSKNGVSDIERFHKTVNEKLRI
FT                 IGNEQNIEDRCTKFETILYVYNHKTKHNSTKRYPADIFLYAGSPDFNVQQN
FT                 KIDKIEYLNKNRHNFEVDTKYRQAPLVKSKITNPFKKTGKIEQVDSKHFEE
FT                 TNRGRKIVHYKSKFKKKKKFNKSKYDNSRPTNEEQDTQHIPNNA"
XX
SQ   Sequence 4783 BP; 1947 A; 856 C; 787 G; 1191 T; 2 other;
     tttaattggc gcagtcggta ggatcataat aaaataaaga gtccttttag tacggtacta        60
     atcaattgaa ggatatgcta tacaactagc tatccaggat tagcgaatta aaaacagtga       120
     ttctaacatt ttgagatccg caaaagaatc tacgtgaaag tggaatttaa ataaaaatcc       180
     cgtgcggtcg gaamcaaagt taatcaaaaa ctttcaattc cgwaatctaa tttaaaaaac       240
     ccaaataaac taaaatttaa aaaaataaaa accaaaaccg agaaaaacaa atacaccatg       300
     tcggttccac aactatcgga aatccattta aaccaactat tgaatcagat aaaggaatta       360
     aaccactacg atggcacacc tggaagacta tctggattcg taaatcaagt agaacaacta       420
     cttaatctat atccaacaca agatgcgaga caagcacacg tcgtatatgg agcagtgaag       480
     cgattactag tggatgcagc gttagaagtc gtaacccaag aaagagcgac aacatggatg       540
     gaaatgaagg aagcactggc aatggcattc aaggatcaca ggccatatac aaccattata       600
     aaacaattag aagaaacacc atacccagga agcatcagta agtttataga gaaactagaa       660
     atacaatatt ggattatatt tgataagtta gaattagaaa atgatcccgt tgataaatca       720
     aactatacag atatgttgaa taggactgtc aaaactgtaa tagatcgaaa actgccggat       780
     agaatttata tgacattggc acgtaaagat attgacacta tttacaaatt aaaacaagca       840
     tcaatggagg taggacttta tgatgctagt ccagaaaatc accgtccaaa tagatcagaa       900
     gtgaacaaac ataggaacag gggaaataat aatcaaaata attatcagaa atattacagt       960
     aacagaaatc aaaattatta tcattctggc atgaatccta gcaataatac acaaccccct      1020
     caaaattcga accagtttat accaaatcaa aaccagtatt cacctcgtcc cataccaaat      1080
     catctaagag gaaactatca cacatataga agggatttaa cacaagccca acaaaataat      1140
     ccccttaact tccaaccctc gacttcaaat aattttaata ataataaacc gataaaaaga      1200
     caacgcgaga gtcagagtga ccagtacaga atggatgtaa attttcatca agctgcctcg      1260
     gacactcaag tgaaagagaa ggacacacca gtccctatgt agaaataagt tatcataata      1320
     aaatttacaa aggaatgatc gacacaggat catcaataaa cattataagg gaaaattttg      1380
     aaaacataga agaaaacgaa gaaaacctaa cagtatacac tattaaaggt ccaattaaac      1440
     taaagaaaag tataataata aaacccactt cagtctgtcc gtctgttcaa aaattctata      1500
     tccacaaatt ttccgacaat tatgatttcc tgttaggtcg aaagtattta gaagatacaa      1560
     aagctaagat aaactatgat aataatacag taattttagg gtcaaaaaca tttaaatttt      1620
     tgtatgatga aaagaagggc gagaccgcat ccaaatgcct cgacccgcag caaaagattg      1680
     attctgcccc agtggagaaa atcaatccaa agatgcaaaa ggttaagacc acatctaagg      1740
     gccttaaacc aaagcgtcaa caacaaaaga aagagaccgc atcatctaaa tgcctcattt      1800
     caaatgttgt tagtgacaca gtggacaatg atgtaacaca tctcgattcc atgtccgttg      1860
     acgacgatat agtcaacttc gcgattaaca atgagttacg cgaatgtaac gagtatagac      1920
     tcgaacattt aaatgcagag gaagttgaat gtttaaagaa ggtcctatac gaatatagag      1980
     acattcagta caaagagggc gaaaatttga ccttcacaag tactattaaa catgtcatcc      2040
     aaactcaaca tgaagatcca gtataccgta aaccctacaa gtacccccaa agcgttgacc      2100
     aagaagtcaa caaacaaatt aaagaaatga tagaacaagg gattgttcgc aaatcaaaat      2160
     ccccttactg ttctcctatc tgggtggtcc ccaagaaggc agacgcctct gggaaacaaa      2220
     aattcaggtt ggtagtcgat tacaggaatc taaatgagat aactgttaat gacaaatttc      2280
     ccattccccg aatggacgaa atattggaca aattgggtag atgccaatat tttacgacaa      2340
     tagatctagc taaaggtttt caccaaatac agatggatga aaattctatt gcaaaaactg      2400
     ctttttccac taagcatggg cactatgaat atactcgtat gccctttggt ttaaaaaatg      2460
     ctccagctac ttttcagaga tgtatgaata atcttctgga agatttgatc tacaaagatt      2520
     gtttagtcta tttagacgat attattgttt attccacttc attggaagaa cacattttat      2580
     ctctaaagaa agtctttgaa aaactgagag aagccaattt gaaattgcag ctagataaat      2640
     gtgaattcat gaagaaagaa actgaattcc taggacacat tgtcacaaca aacggcatca      2700
     aacctaaccc aaacaaaacc aaagcgatca caaactttcc attacctaag acacctaaac      2760
     aaataaaatc atttttggga ttatgtggat tctatcgcaa gttcattcct aactttgcaa      2820
     aaatagttaa acccatgacc ctcaaactaa agaaaggtgc tgtaatagat atgaaatgca      2880
     aagactacat cgaatcattt gagagactaa aggttttgat aacatcagac ccgatattaa      2940
     tctaccctga tttttcaaag cccttttctc taacaactga cgcaagtaat gtagctattg      3000
     gtgcagtgtt atcacagaac cataagcccg tttgttatgc cagcagaacg ctaaacgaac      3060
     acgaaatcaa ctatgctact attgaaaaag aattgttagc tatagtttgg gcgacaaaat      3120
     atttcaggtc atacttattc ggaaggccat ttgaaataat gagtgatcac aagccattgg      3180
     tatggctcaa taatatcaaa gaaccgaaca tgaaattaca aaggtggaaa atcaaactta      3240
     atgaatttga ttataaaata aaatatcttc caggcaaaga aaattatgtc gcggatgctc      3300
     tttcccgcac aaagatagaa gaagtcatgg ttggcgaagt cgcaaacagc gcagacgcaa      3360
     ctatacatag tgccaatgaa gataatttga attatatatc cataacagag agaccaatca      3420
     atttcttctc tagacaaata gagatagaaa aaggcgacag tgacacaaca agtgtaactc      3480
     acttctttca aaaattaaag attaaaataa tctataaaga aatgacactt gaattcgcca      3540
     aaaacctcat taaggaatat gtgtgcacca agaaaagtgc aatttacttc cctaatgatg      3600
     aagattttct gatttttcag agggcattta ccgaaatcat aagccctaac aatttcacaa      3660
     aactattgag atgtacaacc aagctaattg acatactaac ttatgcggaa tttaaggact      3720
     taatcctaaa gaaacataag gaacttttac atccaggtat agaaaaaacc gttaattggt      3780
     ttaaagaaaa atactattac cctgatagtc aaaagctaat ccaaaatatt atcaatgaat      3840
     gtgaaatctg taatctggca aaaacagaac atcgagacac aaaactgaca tacgaaacaa      3900
     cacccgaaat atttaacaca agggaaaaat acgtgataga tttttatctc acgggaaacc      3960
     aaatcttcct atcttgtatt gatatttatt cgaaatttgc ctcactagta gaagtaaaaa      4020
     gtagagattg gctagaagca aaaagagcca ttaccaaaat attcaatgac atgggaaagc      4080
     cacaggaaat taaagcggac aaagactcag cttttatgtg catagctttg caaaactggt      4140
     taagatccga aggtgttgaa atttctgtaa caacaagtaa aaatggtgta tccgatatag      4200
     aaagattcca taaaaccgta aacgaaaaac taagaatcat tggaaacgaa caaaacattg      4260
     aagataggtg tacaaaattc gaaacaatat tatacgtata caatcacaaa accaaacata      4320
     atagtaccaa acgatatcca gcggacattt ttctatatgc aggtagtcca gactttaacg      4380
     tacaacaaaa caaaattgat aagatagaat accttaataa gaataggcat aattttgaag      4440
     ttgacacaaa atatagacag gctccacttg taaagagtaa aattactaac ccatttaaaa      4500
     agacaggaaa aattgaacaa gtggatagta aacattttga agagacaaat cgcggcagga      4560
     aaatcgtaca ttataaatca aagtttaaga aaaagaaaaa atttaataag agtaaatacg      4620
     ataattccag accaaccaat gaagagcaag atacacagca cattcctaat aatgcttagt      4680
     tgcatgttat catttatcac catggttaaa tgcagcaata tcgaagtaaa cccaataagc      4740
     gcgaaaaatg gatatcttat attccaaact ggaacaatgg aaa                        4783
//
ID   Gypsy-12_DSim-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-331
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1532-1532 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. 5' end is uncertain. 3' end is
CC   determined by the comparison to Idefix_LTR and Gypsy-16_DEl-I.
XX
SQ   Sequence 331 BP; 126 A; 65 C; 49 G; 88 T; 3 other;
     actcgcaatc ccgaaaacaa aagtatcaga tttcaataaa cmaagagcac ttgtatccaa        60
     gagcgaatgc acttgaatcc aagagaaacc taaagacaat taaagtcagc aactcaaagc       120
     tctttctctt cacttgatca gagccctaaa gtccaaagcc catatcagaa aagctcgata       180
     ccgaggcttg aacgtcaatc aaatcagaat aatagatgag ttcagtttga gacctaattg       240
     taatcggtcg gtgttcttca acaaataama tatttgtaat cattcagtka aataaaatta       300
     tatttttttt cacatatgag tattgcaaac a                                      331
//
ID   Gypsy-12_DTa-I repbase;    DNA;    INV; 6607 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.08, Created)
DT   09-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DTa_;
KW   Gypsy-12_DTa-LTR; Gypsy-12_DTa-I.
XX
NM   Gypsy-12_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6607
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1618-1618 (2012).
XX
RN   [2]
RP   1-6607
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   Positions [5934-6407] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1590..2867
FT                 /product="Gypsy-12_DTa-I_1p"
FT                 /translation="MPRQKATTSNTVRSRLGLRSGSSLSEITETMDSANSS
FT                 GPSGSIASNSATTTNTNQLVQPQDKNPTNTLDSGNASGPICPTVNNSSLNL
FT                 QQILALVHHLPTYEGPPDNLDRFVGRVEQLLSLAGSVDQATCGQYILGTIR
FT                 DKIIGRADEALSVCDVFLSWDDIKANLKRLYSSKKTEEMLVRELHNLPDGL
FT                 SMGKLYYTATKIRSELMSLAREADPSGHSLTAKRDQYDRFCLNTFLVGLKD
FT                 PLRSAIRNQRPETIEKAYEYGQIELTFSRNLNKHQENRRRDGSIYRNHPYA
FT                 KGLANSDYNNRYIPQQQNYNNGNNANNTNNDNNGRFTQRQQNYNNNNSGRY
FT                 PLHQQNFNNNNNKRFTRQHNSNNNSNGRYDKQTLGRNPFHYNEKQDKINNH
FT                 QDRNNHNQSGPLCNINDDGNFLLEASGSQSVT"
FT   CDS           join(2924..4525,4513..6369)
FT                 /product="Gypsy-12_DTa-I_2p"
FT                 /translation="MVSNPLKFLIDTGSTYSFINPALINKDHIKKLSSDIN
FT                 IHTVLSTFQIGEYTDGINFKQFEEIPNFKFLLFNFHPHFNGLLGMDFLSGL
FT                 NAKINFADSILETPETAIPILTRANPVDSLHTLPQYTKMLLPLPVNFMEGD
FT                 FIYETTNLDNQISITGGLYTAIAGSAYFEVCNNSDQIQTLYLEEPLQAEEF
FT                 SPRTHQYLNCMCAATDTEGLGDQQLNIQMEHLNNEEKQQILKLCKSFKKLF
FT                 HDENNQLTFSNAVKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQN
FT                 IIVNSHSPWSAPVWVVPKKSDITGEKKWRLVIDFRKLNEKTVSDRYPIPNI
FT                 ADILDSIGKTMYFTTLDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMXF
FT                 GLKNAPATFQRVMDNVLGDLVGDVCLVYLDDIIVFSPSLQKHIADIKSVFT
FT                 KLQNANLKIQPSKCNFLRKEIDFLGHIVTQEGVKPNPLKIQAIKDFPCPKT
FT                 TREIKSFLGLLGYYRKFIKDFAKITKPITXRXVKERSQGKKSIIIDEEFKQ
FT                 AVETSKDLLCNDPILIYPDFNKPFTLTTDASNYAIGSVLSQGPDTNDRPIS
FT                 FASRTLSDTEIRYSTIEKEMLAIIWSVGHFRPYLFGRRFKIVTDHKPLIWL
FT                 ENLKGQNPKLLRWKTILAAYDYEVVYKKGSQNVVADALSRIEPNLNINEDP
FT                 QVITIASQPLNHFNNQIIFRTGSTSSKQVETPFAHKTRHIITEPLHTFDSI
FT                 TNTLQTILKPNKTFAIFAPDDIFKIIEESYNNYFFENDLYKISRCKIWLTE
FT                 IANPHDQEIKIREYHFNTNHRGIDETYNHLKRDIYFPHLKDIITKIIQNCD
FT                 TCLTHKYDRHPHRPLMQTPTAPEGPLAVVHIDLYFINNTCNLTIIDKFSKL
FT                 AQAYPVSNRNSIKVADALLQFISHYGAPKEIVFDQGAEFSGSLFNDLLTQF
FT                 QITAHKTSFQQSTGNASVERLHSTLTEVYRIIIKKRKEARLECGHDQILAE
FT                 AVATYNNAIHSSTSYTPFELFHGRTHIFDKTITFDNHHDYLNKLNEFRKDI
FT                 YPKVQEHLNATTERRLAKLNEDRETPVHVEPNDTVFRKENRRNKTTPRFSI
FT                 HKVDRDKGVTLVTTKGQKLHKQKIRKTVKKFTNIGSPATHTNTDT"
XX
SQ   Sequence 6607 BP; 2443 A; 1487 C; 1107 G; 1565 T; 5 other;
     ggcgcagccg gactacgaac aagggattaa tcaagcccac tacgctcata gttctaactt        60
     cattgtaggc tgaggtgagt gaacaggtga cagtggtggt tgtggaaatt ttcgtagtgg       120
     aaaaataata ataaattgtg caaataatac atgtaaacaa accaaacaaa aatcaaaatt       180
     ctaattgcca cgcaagcgac cgcatatgtg tacatcaacc gctgataagg caccgggatc       240
     gcttttgcag gacaatttac aacaattata caaagttgct gtatgcgatg accgtatatg       300
     tgtacatcaa tcgctgataa ggcaccggga tcatccatac acagcaactc ataaaagaga       360
     aacaaaaaaa aaaaacgata aagaagtcaa aaaatttgac attccaaact gctgtgtgtg       420
     gtgaccgtct gtgtgtgtcg aaaatcactt ggtgtgcatg tgtgaattct ctatcattgc       480
     ttttgatttt gcatcgtcat tgcgattgat ttttgtagtt ttgtagttga gaggacaatc       540
     attaggacgc aacaagcctg gtgtcactgt cgtcgagtgc gttttgtagc tttgagagga       600
     accgaaatgt cacggtgaca gcctgtcgtc gagtgtgaaa ataaatcagt cgaacattgg       660
     acttccttgt gaccaaaact aactgcgcaa gaagcaaatt ttaataacga agttttccca       720
     agtatcaccg aagcaccaaa gtgtatatca atcgccgaca aaacaccatg accatctgca       780
     cacagtagtt tgcaagaata aatgtaagtt gtgtgattaa cgaccgtata tgtgtacaac       840
     aatcgctgtt aaggcaccgg gatcgtttcc attaatcaat ttacatgaaa gcaaaagtat       900
     tattataaaa tacatactat aaaattaaaa aaaaaaattt attaattctg cacaaatata       960
     atacaaaact aaaaaaaaaa aataaaggtc atacacagtg atacagttgc ctccggcaaa      1020
     tataaagtga acatgcatgt gtttgtgtta cgcatacttt tgaaattatt gctatgtcac      1080
     tgtgcattgg ttgccggcga gagctgatga cttgccagag tggcgaagcg agacttgatg      1140
     tctcgttagc ttacactgct gaatcctttt tgcacactac gcactacgaa aaaagaacta      1200
     catccgaaaa taaaatcaat aaaatgaatt aaattaaaaa caatccacaa ccaacctaac      1260
     ctattgttgt cgcatgttca ctaacctcta aaatatattg aaaatttatt aaatcacata      1320
     cattacagct gaagccgaaa catccgataa aaaaacacag ggaagcaaat aaaaaaggaa      1380
     actgtgtagc ggatacacac atacaggttt tcttttacgt cagaaagaat acatacgaat      1440
     atttttacat acaaacacaa atacatatac ttagcactaa tatatatata taatcactaa      1500
     ttcacatatt attactatat tattatacta tacacattac tagtgattat tttcaaagaa      1560
     caacacagat ttcttctcaa tacacataca tgccaagaca aaaagccacc actagtaaca      1620
     cagttaggag cagattaggg ctaagaagcg ggtcaagtct atctgagata acggaaacta      1680
     tggattccgc taactcatca gggccaagtg gttccatcgc tagtaactct gcaactacta      1740
     caaacacaaa ccagttagtt caaccccaag acaaaaatcc caccaacact ttggattccg      1800
     ggaacgcatc agggccaata tgtcccaccg ttaacaattc aagcctgaat cttcaacaaa      1860
     tacttgccct tgtacatcat ctacccacct acgaaggccc gcctgacaat cttgatagat      1920
     ttgtaggtag agtagaacaa ctactttcgt tagccggatc agtggaccaa gcaacatgcg      1980
     gacagtacat acttggaact atccgtgaca aaattatagg cagggcagac gaagcgctga      2040
     gtgtttgcga tgtattcctc agttgggacg acatcaaagc aaacctcaag cgactatact      2100
     ctagcaagaa aacggaagaa atgctggtaa gagagctaca caatctcccg gacggactca      2160
     gtatgggaaa gctttattac acggccacga aaataagaag cgaattaatg tcactggcca      2220
     gagaagcaga ccctagtgga cactccctca cggccaaacg tgaccaatat gacagattct      2280
     gcctgaatac attcttagtt ggactaaagg acccacttag gtcagccatt aggaaccaaa      2340
     ggccagagac aatcgagaaa gcgtacgagt acgggcagat cgaattaact ttctctcgaa      2400
     acttgaataa acaccaagaa aaccgacgac gcgacggctc gatatacagg aatcacccat      2460
     acgcgaaagg attagccaat agtgactaca ataaccgcta cataccacaa caacaaaact      2520
     ataataatgg taacaacgcc aacaacacca acaatgacaa taatggtcgc tttacacagc      2580
     gacaacaaaa ttacaacaat aataatagtg ggcgttatcc actgcaccaa cagaacttta      2640
     acaacaataa taataaacgc ttcacacgtc aacataattc caataacaat agtaatggtc      2700
     gatacgataa acaaactttg ggcaggaatc ccttccatta taacgaaaaa caagataaga      2760
     taaataacca ccaagacagg aacaaccata atcaaagcgg tcccctatgt aacatcaatg      2820
     atgatggaaa ttttttacta gaagcctcgg gaagccaatc ggttacataa gcaagaagac      2880
     tcacggatct tccttgccat ttgttttcct atcaccaaac tccatggtgt cgaaccctct      2940
     caaattccta atagacactg gatctaccta ctcatttata aatccagcac ttattaataa      3000
     agaccacatc aaaaaactaa gctccgatat taatattcac actgtactca gtacattcca      3060
     aattggggaa tatacagatg gaataaattt caaacaattc gaagaaatac caaattttaa      3120
     attcttactg ttcaatttcc acccccactt caatggtctc ctaggcatgg atttcctatc      3180
     cggcctaaat gcgaaaataa actttgccga ctccatacta gaaacaccag aaactgccat      3240
     cccaatcctc acaagggcta accctgtaga ctcattacat accctgccac aatataccaa      3300
     aatgctatta ccgctcccag taaatttcat ggagggagac tttatatacg aaacaacgaa      3360
     tttggataat caaatttcca taacaggcgg cttatacacc gcaatcgcag gatctgctta      3420
     tttcgaagtc tgcaataact cagaccagat tcaaacactg tacctcgaag aaccgttaca      3480
     ggcagaagag ttctctccac gaacccatca atacttaaac tgcatgtgcg cagcaacaga      3540
     tacagaagga ctaggcgacc aacaattaaa cattcagatg gaacacctta acaacgaaga      3600
     aaaacaacaa atacttaaac tatgcaagtc gttcaaaaaa ctctttcacg acgagaacaa      3660
     tcaactaacg ttctcgaacg cagtcaaaca ctctataccc acaacagata acattccgat      3720
     tcacacaaaa tcttaccgtt acccatttgt acataaagac gaagttcgaa aacaaatttc      3780
     aaaaatgctc gaacaaaaca ttattgtaaa cagccattcc ccttggagtg cacccgtctg      3840
     ggtcgtacct aagaaaagtg acatcacagg cgaaaaaaag tggcgcttgg taatcgattt      3900
     tcggaaatta aatgagaaaa ctgtctctga tagataccct atcccgaaca ttgcagacat      3960
     actagacagc ataggmaaga ccatgtattt cacaacgtta gacttagcaa gtggcttcca      4020
     ccaaatccaa atgaacccac gcgacgcaag caagacggca ttcacagtcg aaaatgggca      4080
     ttatgagttc acgaggatgc scttcggtct aaaaaacgcc cctgccacgt tccagcgcgt      4140
     tatggataac gtcttaggtg acttagtcgg ggacgtctgt ctcgtctatc tcgacgatat      4200
     aatagtattc tcaccatcac tgcaaaaaca tatagcagat ataaaatctg tattcacaaa      4260
     actccaaaac gcaaacctaa aaatccaacc gagcaagtgt aactttttaa ggaaggaaat      4320
     cgacttcctt ggccacatcg tcacccaaga aggagtcaaa ccaaacccac ttaaaattca      4380
     agcaatcaag gacttcccct gcccaaagac aactcgggaa attaagtcat ttttaggact      4440
     tttagggtat tacaggaaat ttataaagga ctttgcgaaa ataactaaac ccataacgag      4500
     wcgwttmgtt aaggaaagaa gtcaataata atagatgagg aatttaaaca agcagtcgaa      4560
     acgtcgaaag atcttctttg taatgatccc atactcatat accctgattt caacaaaccg      4620
     ttcacgttga ccacagacgc aagtaattat gcaataggct ctgtgttgtc acaaggccca      4680
     gacactaatg acagaccaat atcctttgct agcaggacac tatcggacac ggaaatccgc      4740
     tattctacga tagagaaaga aatgttagct atcatttggt ctgtaggtca cttcagacca      4800
     tacctcttcg ggcgtagatt caaaatagtc acggaccata agccattaat ctggctagaa      4860
     aatcttaaag gccagaatcc aaaactactc cgatggaaaa ctatcttggc cgcttacgac      4920
     tatgaagtcg tatacaaaaa agggtcgcaa aacgtagtcg ctgacgcact cagcagaatt      4980
     gagccaaacc tgaatataaa cgaagaccca caagttataa caatcgcttc acaaccacta      5040
     aatcacttca ataatcaaat aatatttcgt accggatcaa catcgtcaaa acaagtagaa      5100
     acaccatttg cccataaaac aagacatata ataacagaac ccttgcatac tttcgactcc      5160
     ataacaaaca cccttcaaac aatcctgaaa ccgaataaaa cattcgcaat atttgcgcca      5220
     gatgatattt tcaaaataat agaagaatct tataataact acttctttga aaatgactta      5280
     tacaaaattt cacgctgcaa aatatggcta accgaaatag ctaatcccca tgaccaggaa      5340
     atcaaaattc gtgaatacca ctttaacacc aatcataggg ggatagatga aacatataac      5400
     catctaaaaa gggacattta ttttccgcat ttaaaagaca ttatcactaa aattatacaa      5460
     aattgcgata cctgcttaac ccacaagtac gatagacacc cccatagacc attgatgcaa      5520
     acaccaaccg ccccagaggg accattggcg gtcgtccata tagacttata tttcattaac      5580
     aatacttgta acctgaccat tatcgacaaa ttttccaagc tagcgcaagc ctaccctgtt      5640
     agcaatagga attcaataaa agttgccgat gccctattac aattcataag tcactacgga      5700
     gcaccaaagg aaatagtttt cgaccagggc gcggaatttt cgggcagtct attcaacgac      5760
     ctcttaaccc aattccaaat aacagctcat aaaacatcat tccaacaatc aacgggcaac      5820
     gcttcggtcg aaagactgca ttccacctta accgaagtat acaggataat cataaaaaaa      5880
     aggaaggaag cacgcctaga atgcggacat gaccaaatac tagcagaagc agttgcaaca      5940
     tataacaatg caatacactc cagcacttcc tatacccctt tcgaactctt ccacggaaga      6000
     actcacatat tcgacaaaac aataacattc gacaatcacc acgactacct taacaagtta      6060
     aacgaattta gaaaagatat atacccaaaa gttcaagaac atttaaacgc gaccacagaa      6120
     agaagattgg caaaattaaa cgaggacaga gagacaccag tccacgtcga gcctaatgat      6180
     acggtattta gaaaagaaaa ccgtagaaac aagacgacac cgagattttc aatacacaaa      6240
     gtagatagag acaaaggcgt cacactggta acaactaaag gacaaaagtt acacaaacaa      6300
     aaaattagaa aaacagttaa gaaatttacg aacattggat caccagcaac acatactaac      6360
     accgacacat aatatgtaaa caaaatgtaa cactagaatt agatacacaa atttttatat      6420
     tatattcatt catatacttt caacaagaaa cttatgttaa cattaagata cacatatttg      6480
     aaacaaattg ttaaattcaa agtatcgtcg gagttcgtgg cgtacaccaa caacacctcg      6540
     cctagccgcc tttctccgat caggccatta cccctttatg gcctttctct tcggactggg      6600
     ggggagg                                                                6607
//
ID   Gypsy-12_DTa-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.08, Created)
DT   09-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DTa_;
KW   Gypsy-12_DTa-LTR; Gypsy-12_DTa-I.
XX
NM   Gypsy-12_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-273
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1619-1619 (2012).
XX
RN   [2]
RP   1-273
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 273 BP; 89 A; 73 C; 47 G; 62 T; 2 other;
     agttaacatg cccctctcac cggccacagg aaacaacaca gaagcgacaa ctacaagcct        60
     aaccctgacg gacaataata aggattgcca acatgagaaa cccagggtac actgatagag       120
     tggactcgta cacactttga cataataaac aksattctta tttggtactc caagcaacac       180
     agtcgtttat ttcgaaggct tcgttccagc attttctaaa ataatactcg catatgagac       240
     ctcctctact ccctcggtca caggacggta act                                    273
//
ID   Gypsy-12_DVir-I repbase;    DNA;    INV; 6654 BP.
XX
AC   .
XX
DT   06-OCT-2011 (Rel. 17.09, Created)
DT   18-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DVir-LTR; Gypsy-12_DVir-I.
XX
NM   Gypsy-12_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6654
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1824-1824 (2012).
XX
RN   [3]
RP   1-6654
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (18-FEB-2022).
XX
DR   [3] (Consensus)
XX
CC   [3]: 97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           588..1985
FT                 /product="Gypsy-12_DVir-I_1p"
FT                 /translation="MNSSFLRYRDRSARGSESDDSTTLDREAVPQKIADNR
FT                 CKIGMEPEQLRALVQAAVASALEAQSAILRQRDAELRASLDAQIQELVGRI
FT                 STSSIETPPVQAFEPVEIRNDVQCNEPLDAVKCLPEFTGVPETYASWRQAA
FT                 IAAYKIYKPYDGSSRHYQAVIIIKSKIRGAADGVLGQFGTVMNFDAIINRL
FT                 DFTYRDKRGIHVIEQEMSTLRQGSLTILQYYDEVEKKLTLLTNKVNMSYEP
FT                 SMAQGLCTKFRDDALRVFVSGLKRSLTDVLFAAKPKDLPSALALAQEVEAN
FT                 HERYAFAASFAKGQEDRERKVTPRPQVRQQDRGQQQGDPQPSGSKNPHFTK
FT                 QQKQQQSQFEQQSGRWNKGGGSQEPMDVDPSVSKILQPSQAPAYVNSSAPQ
FT                 AYKRTATSGRLSGQRRQRVNHTAHEPDQDSGSYASSAAAAEQQIADDNGSG
FT                 YDSDTLNFLGEAPCCPTSVEE"
FT   CDS           2000..5038
FT                 /product="Gypsy-12_DVir-I_2p"
FT                 /translation="MRFLIDTGASKNYIRPHKNLKGVCPVNSPFSTHSIHG
FT                 TTKITHKCLISLFGKTATFFLLPNLSTFDGIVGLDLLTQAGVSLCLSSGQL
FT                 KCGAETEQIEFHRCADVNFTNVDCADAPDAVKDAFLKMLKSKHKAFADPEE
FT                 ALPYNTSVVATIRTTDEQPVYVRLYPYPMGAAEFVNKEIQSLLKNGIIKKS
FT                 VSPYNNPIWVVDKKGTDEFGNKNMRLVMDFRKLNEKTIADRYPMPNIPMIL
FT                 GNLGKAKYFSTLDLKSGYHQITLAERDREKTAFAVNGGKYEFCRLPFGLKN
FT                 AASIFQRTVDDVLREQIGKSCYVYVDDVIVFSKDESSHVQHVEWVLKSLYE
FT                 ANMRISKEKSRFFKKSVGFLGFVVTSNGATTDPEKVKAIQEFPEPKNIFEI
FT                 RSFLGLASYYRCFIKDFASIAKPISDLLKGENGSVSKHRSRNIPVEFSEIQ
FT                 RHAFQKLRNILSSENVMLRYPDFKKPFDLTTDASAYGIGAVLSQEGRPISM
FT                 ISRTLKPPEVNYATNERELLAIVWALSKLRHYLYGVKDINIFTDHQPLTFA
FT                 VSESNPNAKIKRWKARIEETNARIFYKPGKENLVADALSRQQLNTLDELNT
FT                 DSCAATVHSELSLTYTIESTEKPLNCFQNQIVIEEARVPTKRNFILFGDKR
FT                 RHEVGFTDHTALLDELLDLINPNAVNALYCNLHTLAQVQDGLVRMFPGTKF
FT                 WHCKNRVADVFNVDERREILVAEHNRAHRAAQENVKQVLSEYYFPKMAKLA
FT                 KEIAESCRICSAAKYDRHPKRQELGETPIPETPGELLHIDIFSTDKKFFLT
FT                 CVDKFSKFAVVQPIQSRTIGDLKAPLLQLTNFFPRARTIYCDNEPSMNSQT
FT                 IKTLLLNNYGIHIVNAPPLHSTSNGQVERFHSTLAELARCLKLERNISDSV
FT                 EVIMLATIEYNKTIHSVINKRPVDALHVPSGEPEREISAKLRSAQDALRAR
FT                 LNDQRQNRVFEVGEKVLVKRNRRLGNKLTPLCEERIVEADLGTTVLIGGRV
FT                 VHKDNLK"
FT   CDS           5136..6653
FT                 /product="Gypsy-12_DVir-I_3p"
FT                 /note="env."
FT                 /translation="YLRHLAFPLGRHVVIVWSVLSVFRRFGFLLFLFFANA
FT                 AARVTNYSHAKYIPIVEGQVLVWEEFNFVRHTANISEYEKMVNETMELCEM
FT                 FPQSHMRKLLSVDASHLRDLLEALGVHHRVARSLDFLGTALKVVAGTPDAS
FT                 DFEKIKFTELQLVNSNNRQVAINTKVQEQINQLTTSVNTLLKAAKKNQIDS
FT                 GHLYETLLARNRMLLMEMQNLMLAVTLAKINIISPNILDHADLKSVWVDEP
FT                 TGTSIADLMSVASVKVLQSVNALHFIIKFPKIKMACRKVMLYPVAHENAVL
FT                 QIDDNIIAECGDQVLALKNCTSTPGGTFCQLSPTSSCARELHAGGLANCQM
FT                 QPSHLDPITWVDDGILIINNRPAKVCVDNGTETWVHGTNLITFNNWALINE
FT                 TKYLNRNNVQSKFPGIAASPLLNVTGHQDVLSLPYLHRLNERNLEIIKEVK
FT                 DEIGSVDSVVIAFLLGAVCCTIICVGVTYRRFTKNMASAKEIKKVIAEIGT
FT                 AEGGLNLKGE"
XX
SQ   Sequence 6654 BP; 2006 A; 1538 C; 1510 G; 1600 T; 0 other;
     ggcgcccaac gtttttcgga ccattttgtt ccataattat tttgtgtgct gtgcagtgta        60
     aagaactaac ctaccagtgc aaacaataaa agctgtgcct gacctacatc aacttacgtc       120
     agcggcacaa gcacaataaa aaccatttga tacaccgaag ccgctggagc tcttcggcca       180
     gtgacttgtc accaaaccag cgcgcaagcg ggtttgggca gcgacgtaaa ccaacaccac       240
     agacttcagc gagggataaa aaaaaaagca ttcgcgactg cagcgtggga atcagtagtt       300
     ttatacgtag aacatacaac ctttctagga tcaaataaaa tgtaagtggg ccatcatttg       360
     gcacaaactt ttttcaattt gcgtgattta tttaaaataa aatcgtaaaa aaatataagt       420
     agaaatatta aaattgcagt aattgtgttc ccaactaact ttgagtaaca caattttgca       480
     tccatcagca attttcaata aactctcctc tgtcagcatt catttaattt accgttgttg       540
     atttgccctt gaaattgtgt tgttattatt gttgacaagt atagtccatg aacagctcgt       600
     ttctcaggta cagagaccgc tctgcgaggg gatctgagtc agacgactcc accaccttag       660
     atagggaagc cgtcccgcaa aaaatcgctg acaacaggtg taaaatagga atggagcctg       720
     agcagcttag ggccttggtg caggccgcag tggcctccgc cttagaagca cagagcgcaa       780
     tattgaggca aagagatgca gagctgaggg cttccttaga cgctcagata caagaattgg       840
     taggcagaat atctaccagt agtatagaaa caccgccggt ccaggcattt gagccggtgg       900
     aaatcagaaa cgacgtccaa tgtaatgaac cattggacgc cgttaaatgc ttaccagaat       960
     ttacgggggt gccagagacg tacgcctctt ggagacaagc tgcgatagcg gcatataaaa      1020
     tttacaagcc atacgacggc agctcacgcc actaccaggc ggtcattatt ataaagagca      1080
     aaattagagg ggcagctgac ggcgttttgg gtcagtttgg cacagtaatg aattttgatg      1140
     ccataataaa ccgtctcgat ttcacataca gggataagag aggcattcac gtcatagagc      1200
     aagagatgag caccctaaga cagggctcgt taacaatttt acaatactat gacgaggttg      1260
     agaaaaagct aactcttctc accaataagg tcaacatgtc ttatgaacca agcatggcac      1320
     aagggctctg tacaaagttt agagatgatg cgttgcgtgt ttttgtctca ggcctaaagc      1380
     gtagcctgac ggatgtcctg ttcgcggcaa agcctaagga cttaccgtcg gccctagcgc      1440
     tagcgcaaga ggtagaggca aaccatgaga ggtacgcctt tgccgctagc ttcgctaaag      1500
     gacaagaaga tagggaacga aaagtgaccc cgaggccgca ggtccgtcag caagataggg      1560
     gtcaacagca gggggatccg caacccagcg gttccaaaaa tcctcacttc actaaacaac      1620
     agaaacagca acaaagtcaa tttgagcaac agagtggcag gtggaacaaa ggtggcgggt      1680
     cacaggaacc aatggacgtc gatccatctg tgtctaaaat tctacaacca tcgcaagcac      1740
     cagcctacgt taactctagc gctcctcaag cctacaaaag aacggccacg tctgggcgtt      1800
     taagcggaca gaggaggcag agagtcaatc acacagctca cgagccggat caagattcag      1860
     gttcgtatgc tagctctgca gcagcagcag aacagcaaat tgccgacgac aatggtagcg      1920
     gttatgactc agacactctc aattttttag gggaagctcc ctgctgccct acatcagtag      1980
     aagagtagca gggatccaga tgaggtttct catcgacacg ggcgcttcca agaattatat      2040
     cagaccacat aaaaatctaa aaggtgtgtg cccagtaaat tctcccttct ctacccattc      2100
     tatacacggc accacgaaga tcactcataa gtgccttata tctctgttcg gcaaaactgc      2160
     cacatttttc ttactcccaa acctgtccac atttgatgga attgtgggcc tcgacttgct      2220
     cacacaagca ggagtttcgc tttgtctttc ttctggccaa ctcaaatgtg gcgcagaaac      2280
     tgaacaaatc gaattccaca ggtgcgcgga tgttaacttt accaatgttg actgcgccga      2340
     cgcgcccgat gctgtaaaag atgcattcct aaagatgcta aaaagcaaac ataaggcctt      2400
     cgcagatccg gaagaagcac ttccctataa cacatcagtg gtggcaacca tcaggaccac      2460
     tgatgaacaa ccagtttatg tccgactgta cccctacccc atgggagcag cggaattcgt      2520
     taataaagag attcaaagcc ttctgaagaa cggtatcatc aaaaaatctg tctcccccta      2580
     caacaacccc atttgggtgg tggacaagaa ggggacggac gagtttggta acaagaatat      2640
     gcgcctagta atggattttc gcaaacttaa cgagaaaacc atcgcagaca gataccctat      2700
     gcctaacatt ccaatgattt tggggaatct tggcaaagct aaatactttt cgacattgga      2760
     cctaaaatcc ggctatcacc agatcacgct agcagagcgt gaccgtgaaa aaacagcctt      2820
     tgcagttaac ggggggaagt acgaattttg tcgacttccc tttgggttga agaatgcggc      2880
     cagcatcttc caaagaactg ttgacgacgt actgcgtgag caaattggca aatcttgcta      2940
     tgtctacgtt gacgatgtca tcgtcttctc aaaagacgaa agttctcatg tccaacatgt      3000
     agagtgggtc ttaaagagcc tgtacgaggc aaatatgaga atctccaagg aaaaatcgcg      3060
     tttttttaag aaaagcgtag gttttcttgg tttcgtggta accagtaatg gagctacaac      3120
     ggaccccgaa aaagtcaaag cgattcagga gttcccagaa ccaaagaata tattcgagat      3180
     cagatcattt ttaggactgg ctagttacta taggtgtttc atcaaagact ttgcctcaat      3240
     agcaaaaccc atttctgatc ttctaaaggg cgagaatggg tcagtaagta aacatagatc      3300
     gcgaaacatc ccggtagaat tctctgagat tcagcgtcac gcattccaaa agctacgcaa      3360
     cattttgtcg tcagaaaacg tcatgctcag ataccctgac tttaagaagc cgtttgatct      3420
     aacgacagac gcttcagctt acggcatagg ggcagtgctt tctcaagagg gtcgccccat      3480
     ctcaatgatt tccagaacat tgaaaccccc ggaggtgaac tacgccacca acgagcggga      3540
     acttttggct atagtttggg cccttagcaa gctacgtcac tacctatatg gagtaaaaga      3600
     cattaacatt ttcacggacc accaaccgtt aacttttgcc gtttctgagt caaacccgaa      3660
     cgccaaaatt aaaagatgga aggcgcgcat tgaggaaacg aatgcgcgaa tattttataa      3720
     gccaggcaag gagaatttag ttgctgatgc gctatcgcga caacagctca acactcttga      3780
     cgagctgaat actgattcct gcgcagccac agtccacagc gagctgtcct tgacctatac      3840
     aattgagtcg accgaaaagc cacttaattg tttccaaaat caaattgtca ttgaagaggc      3900
     acgcgtcccc accaaacgca acttcattct tttcggggac aagaggcgtc atgaagtggg      3960
     cttcactgat cacacagccc ttttagatga actgcttgac ttgattaatc caaatgcggt      4020
     caatgccctc tattgcaacc tgcacacact agcacaggtg caggatggct tagttcgcat      4080
     gtttccaggc acaaagttct ggcactgcaa aaaccgagtt gcagatgtct tcaacgttga      4140
     tgagaggaga gaaattctcg ttgccgaaca taatagagcg cacagagcag ctcaagaaaa      4200
     tgttaagcaa gtgttatcag aatactattt ccctaaaatg gcgaagttag ctaaagaaat      4260
     tgcggaaagt tgtagaatct gctcagcagc caaatacgat aggcacccga aaagacagga      4320
     gctgggagaa actccgatcc ctgagactcc tggggaattg ctacacattg atattttttc      4380
     cacggacaaa aaattttttt tgacctgtgt tgataagttc tctaaatttg cagtcgtaca      4440
     accaattcag tcgcgcacta tcggggattt aaaagctcca ctactgcagc tcacgaattt      4500
     ctttccacga gccagaacaa tttattgcga caacgagcct tcgatgaatt ctcaaacgat      4560
     aaagaccctg ttgttaaaca actatggaat ccatattgtt aatgcgccgc cgctgcatag      4620
     cacctccaat ggccaagtcg agcgcttcca tagcacgcta gccgagctgg cacgttgtct      4680
     caagctggag agaaacatca gtgactcagt cgaagtcata atgctagcca cgattgagta      4740
     taacaagaca atacattcgg tcatcaacaa gagacctgtt gatgccctcc atgtgccctc      4800
     aggcgaaccc gaaagggaaa tatcagcaaa gttaagaagt gcacaagatg cgctccgtgc      4860
     taggttgaac gaccagcgac agaatagagt ctttgaagta ggcgaaaaag ttctagtaaa      4920
     aagaaaccgc aggcttggca ataaactcac gcccttatgt gaagaacgga tcgtagaggc      4980
     agaccttggt acgaccgttc tcattggagg gagggtggtc cacaaggaca accttaagta      5040
     gggcgagagc tgaaataaaa catcgattat atgcatcttg aatttaacta taagtttcaa      5100
     catttgtgcc actaggcttc accttcaagt tttaatattt acgccacttg gcatttcctt      5160
     taggaagaca cgttgtaata gtttggtccg ttttgtctgt cttccgcagg ttcgggtttc      5220
     tgctatttct attttttgca aatgcggcag cgcgtgtgac taattactca cacgccaagt      5280
     atattcccat tgttgagggc caagttctgg tctgggagga attcaatttc gtcaggcaca      5340
     cagcaaacat ctctgagtac gagaaaatgg taaacgaaac aatggagcta tgtgaaatgt      5400
     ttccgcagtc acacatgaga aagcttctaa gcgtagatgc gtcccacctc agagatctgt      5460
     tagaagctct tggcgtgcac cacagggtgg caagaagttt agatttcttg ggcacagccc      5520
     tcaaagtagt tgcgggaaca cctgacgcca gtgacttcga gaagatcaaa ttcactgagt      5580
     tacagttggt gaactctaac aaccgacagg tagctatcaa cacaaaagtt caggaacaaa      5640
     tcaatcaact cactacaagt gtcaacacat tactaaaagc tgcaaaaaag aatcagatag      5700
     attccgggca tttatacgaa actcttttag ctcggaatag aatgttgctg atggaaatgc      5760
     agaatttgat gctcgctgtt acccttgcaa aaattaatat cataagccca aatatattag      5820
     atcacgcaga tttgaaatct gtttgggtcg atgaacccac aggtacttca atagctgacc      5880
     ttatgtccgt tgcgtccgtg aaagtattac aatctgttaa tgcccttcac tttatcatta      5940
     agttcccgaa aatcaaaatg gcttgcagaa aggtgatgct gtatccagtt gcacatgaga      6000
     atgctgtgct acaaattgac gacaacatta tagctgagtg cggagatcaa gtgcttgccc      6060
     ttaagaattg cacttccacg ccgggaggaa ccttttgtca actttcaccg accagctctt      6120
     gtgccagaga gctgcatgct ggtggcttgg caaactgcca aatgcagccg agtcacttag      6180
     acccgatcac atgggtcgat gacggaattc tgatcatcaa taaccggcct gctaaagttt      6240
     gcgttgacaa cggtactgag acttgggttc acggaacgaa tctaatcacg ttcaataatt      6300
     gggctctgat caacgaaact aagtacttga atcgcaacaa cgtccagagt aagttccccg      6360
     gcatcgcggc atctcccctt ctgaacgtca ccggccacca agacgtgttg agtctcccct      6420
     accttcatcg cctgaatgaa cgtaacctgg agatcatcaa ggaagtcaag gacgaaattg      6480
     gaagcgtcga cagcgtggta atagccttct tgttgggtgc tgtgtgttgc accataattt      6540
     gcgtcggagt cacctaccgt cggttcacca aaaacatggc atcggccaag gagattaaga      6600
     aggtgatcgc cgagatagga acggccgagg gcggccttaa cttaaaaggg gagc            6654
//
ID   Gypsy-12_DVir-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   06-OCT-2011 (Rel. 17.09, Created)
DT   18-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_DVir-LTR; Gypsy-12_DVir-I.
XX
NM   Gypsy-12_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-396
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1825-1825 (2012).
XX
RN   [3]
RP   1-396
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (18-FEB-2022).
XX
DR   [3] (Consensus)
XX
CC   [3]: 97% identical to the consensus.
XX
SQ   Sequence 396 BP; 116 A; 90 C; 83 G; 107 T; 0 other;
     agttaacaga ggccaacgac accagctcca gatgctgata tagcactgag ccggatgttc        60
     ttacgagcta acaggggtca gcaaaatgca acataacacc agccgcagat gctgacatag       120
     ctctgggccg gatgttcttg cacgacggca gcgcacgagg cgcaagctaa gcattctagc       180
     ggccgttgtg aaagcacaca atagcttagg tatttttgat caatcttttg taaatttagt       240
     ttttaattcg actttcactg cggcacatcg gcccagcgac ttcgtgtata atttaactca       300
     ctcactacgg cgtgtcggcc tagtgtttta taaatcatta ttaaaataaa gttctatcaa       360
     aataatccgc gaggacttat tatttaaaac ctaatt                                 396
//
ID   Gypsy-12_DWil-I repbase;    DNA;    INV; 5841 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DWil_;
KW   Gypsy-12_DWil-LTR; Gypsy-12_DWil-I.
XX
NM   Gypsy-12_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5841
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   Positions [5102-5590] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1294..5769
FT                 /product="Gypsy-12_DWil-I_1p"
FT                 /translation="MSAMRVAALLAAPVTGLDAEPWEEMPALVPLVPPVPT
FT                 SAAAITPATSASRSLDEQLATLQKQHELLQLQHQILKLQQGIDEFQAPRQQ
FT                 VSDVSVIESMVARFSADNAYDVKKWLNDLEDAFGILQLNDRLRLIACRRML
FT                 EGTAAVLLRTVSVHSYEELKAILLREFGRSCSVEEVYHALRGRRIKAGEGC
FT                 LRFAIEMQEIAMNAPIPENELVDLIIDGLRDNSTRVGMLYSARTVAELKPL
FT                 LERYERLRMQAAASRQSNSVKAQSTTTAVAPGNKSSGTATSETRCFNCSGW
FT                 GHYKSQCPKPIRPPNSCFKCGIVGHIYKNCPSRIGNATNITAAAADEAGDR
FT                 LDHLQLVSVAFVCDEVQDRKFIDMFSLLDSGSPKSFIRESEVPSNCRLSPR
FT                 TLNCRGLGNSQLLSLGQVQCRVRLRNTQIIHTFEVLTNQATELPMIIGRDL
FT                 LYKINIRLCKLKELKYEKESLILMNKQTECINPKLTGVLKSFDIFMEERVI
FT                 LPYDRNEIASAELLSDSPLLKTSAVPSETLNDALMAINSIELPAVSELDFD
FT                 IECDRNEIVPAELLSDSPLPKTSAVPSETLNDALMAINSIELPAVSELDFD
FT                 IEPALREEQTAALKSIISASYVQVDPDLIKPMNYEMKIELTSQTPIFCRPR
FT                 RLSHHERIEVREICDDLLKAGIIRHSSSPYAAAIVPVRKKDSTLRKCVDYR
FT                 PLNKITVRDHFPIPLLDDCIEHLGGKSFFTILDLKNGFHHVKMHPDSIKYT
FT                 AFVTPDGQFEYVRMPFGLCNGPSVFARFVYFVLKEFINRGQLVIYMDDILV
FT                 ASHDFETHLEILKEILYVLRVNGLCLKLTKCRFAYRELEYLGYLANSAGIT
FT                 PKPAHIQAIRDLPIPRDSKELERCLGLFSYFRRFVSGFAKIACPLSRLLRK
FT                 DTPYVFSDECLEAFRTLKLKLIESPVLSIYNPKSETELHCDASSIGFGAVL
FT                 LQKQTDGKLHPVSYFSKMASAAESKLHSYELETLAIVYSLKRFETYLKFIP
FT                 FKIVTDCNSLALTLRNGGHSAKIARWALLLENYNYTIVHRSGVGMPHADAL
FT                 SRIETAAYVDDINLDFQLQLTQNRDPEIVKLRDELEKYEIANFELRDGVVY
FT                 RLSSTSIPQLYVPSEMVNHVIRVVHEKLGHMATEKCCAQIKKHYWFPCMKS
FT                 YVNNYIKNCLKCIYYSASASDHRVTLHSIPKVPLPFDTVHIDHLGPLPSIR
FT                 SKKKYLLVVIDAFTKFVKLYPAATTNSREVCQTLESQYFANYSRPRRIISD
FT                 RGTCFTSSEFEEFLKANNIIHVLNATASPRANGQVERVNRVLGPMLGKLTE
FT                 PVDHADWVQQLPNIEFALNNSVHSTTKFAASVLLFGVEQRGVVVDELTERL
FT                 GERTEEVDASEVDVRRLAFRNIVKSQEYNSEYYSKHHLPAVSFEEGDFVVI
FT                 KNVDTSAGTNKKLIRRYRGPYVVHKKLPNDRYVIRDVEGSQITQLPYDGVL
FT                 EASKLKLWVAPDQDCTSDNQTKATPAT"
XX
SQ   Sequence 5841 BP; 1357 A; 1685 C; 1416 G; 1379 T; 4 other;
     actcagaagt gggatgacca cccgaaagga taaatatttc gggacacggc aggccacacg        60
     ttccacatcg agaacggccg cctccacgcc caccgctgct ggcgcaccca ctgctktgac       120
     tcccgctgca gtaccggcgg ccactggagc cgccgctgca gtaccgagag ccgctgtgcc       180
     aactgccgac atactcgccc ctgccgggcc cgccgctgct gggccaactg cggacatact       240
     tgcccctgcc gggcccgccg cggctgggcc aactgccgcc acacttgctc ctgctgggca       300
     cgctgctgcc gtactcgccc aggttgggcc aaccgctgac atgctcgccc ccgccgggcc       360
     aactgctgct atacgagccc ctgctgggct aactgatgcc acattcgccc ctgccgggcc       420
     aacggctgac atattcgccc ctgccgggcc aaccgctgac atgctcgccc ccgccgggcc       480
     aactgctgct atacgagccc ctgctgggcc aactgmtgcc acattcgccc ctgccgggcc       540
     aaccgctgac atgctcaccc ctgctgggcc aaccgctgct gcatccgccc ctgctgggcc       600
     aactgctgcc gcacccgccc ctgctgggcc cgccgctgct gcatccgccc ctgctgggcc       660
     cgccgccgct gcatccgccc ctgctgggcc cgccgctgct gcatccgccc ctgctgggcc       720
     cgccgccgct gcatccgccc ctgctgggcc cgccgctgct gcatccgccc ctgctgggcc       780
     cgccgctgct gcatccgccc ctgctgggcc cgccgctgct gcatccgccc ctgctgggcc       840
     cgccgctgct gcatccgccc ctgctgggcc accgctgccg cacmcgcccc tgctgggccc       900
     gccgctgctg catccgcccc tgctgggccc gccgccgctg catccgcccc tgccgggccc       960
     gccgctgctg catccgcccc tgctgggcta accgctgtca cactcgcccc tgctggccca      1020
     actgccgtca tactcgcccc tgctgcacmc gccgctgctg tgcccgccgc ttacaagcca      1080
     cctcggcaga ctgccgctgc tgccgcctct gcacccgctg ccactgctgt acccgctgcc      1140
     actgtcgtac ccaccaccgc tgccattgct gtacccacca ccgctgcacc cgctgccatt      1200
     gctgtacccg ccgccgctgc cgccgcatcc attacggtac ctgccgccgc tgccacatcc      1260
     actgtacctg cggatgctgt gcccgccgac tatatgtctg ccatgcgggt tgcggccttg      1320
     ctcgccgccc ccgtcaccgg tctcgacgcg gagccatggg aagagatgcc cgctctagta      1380
     cctctagtac cccccgtacc gacttccgcg gccgccatca caccggccac ttccgcctcc      1440
     cgcagcctgg atgagcaact ggcgacgctg cagaaacaac atgagttgct acagctgcag      1500
     catcagatcc tcaagctgca gcaagggatt gacgaattcc aagcaccgag gcagcaagtc      1560
     agtgacgtga gtgtcattga gagcatggtg gctcgatttt cagcggataa cgcatatgac      1620
     gtgaagaaat ggctgaatga cctggaagac gcatttggaa ttctgcagtt gaacgaccgc      1680
     ctacgtttga tcgcatgccg tcgcatgctg gaaggtacgg cggcggtgct gctgcgcacg      1740
     gtatcggtgc acagctacga agaattaaaa gcaatcctct tgcgagaatt tggacgctcg      1800
     tgtagcgtcg aggaagtgta ccacgctctg cgtggccggc gcatcaaggc aggcgaggga      1860
     tgtttgagat tcgcaatcga gatgcaggag attgccatga atgctccgat accggagaac      1920
     gagctggtcg acctgataat tgatggattg cgggacaatt ctactcgagt cggcatgctg      1980
     tactcagccc ggacggtggc cgaactgaag cccttactgg aacgttacga acgcctccgt      2040
     atgcaggccg ctgcctcccg acagagcaac agcgtgaagg cgcagtcaac aacaactgcc      2100
     gtggcgcctg gaaacaaatc gtcgggcacc gctacgagtg agaccagatg tttcaactgc      2160
     tcaggatggg ggcattacaa gagtcaatgc ccgaaaccaa taagaccgcc gaattcgtgt      2220
     ttcaagtgtg gcatagtggg ccacatctac aagaactgcc cgtctcgaat tgggaatgcc      2280
     accaacatca ctgccgccgc cgctgatgaa gcgggagatc gactagacca tttacaactg      2340
     gtgagtgttg cttttgtttg tgatgaagtg caagatagga aatttataga tatgttttct      2400
     ctccttgatt cgggcagccc aaagagcttt atccgtgaat ctgaagtccc ctccaactgc      2460
     cgtcttagcc cccgtacttt gaactgccgt ggcctaggaa atagccaact tctgtcctta      2520
     ggccaagttc agtgtagggt tcgcctccgc aacacacaga taatacatac gtttgaagtc      2580
     ctgacgaacc aagcaactga actgccgatg attataggta gagatcttct gtataaaatt      2640
     aatattagac tatgtaaact gaaagaactg aaatatgaaa aagaatcgtt gatactcatg      2700
     aataaacaga ctgaatgtat aaatccaaaa cttactggtg ttctgaagtc ctttgacata      2760
     tttatggaag agagagtgat actgccgtat gataggaatg agattgcatc tgccgaattg      2820
     ttgtctgatt ctcccctttt gaaaacttct gctgtacctt cggaaacatt gaacgatgca      2880
     cttatggcga taaattccat tgagctccct gctgtcagtg aattagactt tgatatagag      2940
     tgtgatagga atgagattgt gcctgccgaa ttgttgtctg attctcccct tccgaaaact      3000
     tctgctgtac cttcggaaac attgaacgat gcacttatgg cgataaattc cattgagctc      3060
     cctgctgtca gtgaattaga ctttgatata gagcccgcgt tacgggaaga gcaaaccgca      3120
     gcccttaagt ctattatttc cgcttcgtat gtacaagttg atccagattt aatcaagccc      3180
     atgaactatg agatgaaaat agaattgact agccaaactc cgattttctg ccgcccccgc      3240
     cgtctgtcgc accacgaacg catcgaggtg cgtgagattt gtgacgatct cttgaaagct      3300
     ggcattattc gccacagtag ttccccttac gctgccgcga ttgtccctgt acgcaaaaaa      3360
     gacagcacgc taagaaagtg tgtagattac cgcccgttga acaaaattac agttcgagat      3420
     cattttccga ttcctctgtt agatgattgc attgaacatc tgggtggcaa atcattcttc      3480
     accatcttgg acttgaagaa cggtttccac catgtgaaaa tgcacccaga ctcaatcaaa      3540
     tatactgcct ttgtaacccc tgatggccag tttgaatatg tacgcatgcc cttcggactt      3600
     tgtaatggcc cttccgtgtt cgctagattc gtttattttg tccttaagga atttataaac      3660
     cgaggtcaac tggtgatata tatggacgac attctagtcg cgtcgcatga ctttgaaacc      3720
     caccttgaga ttctgaagga aatattgtat gtgttaagag tgaacgggct atgcctgaag      3780
     ctgacgaaat gccgttttgc gtatagggaa ctagagtact tgggctactt agccaattcc      3840
     gccggtatca cgcctaaacc agctcatatt caggcgatac gggatttgcc cattccaagg      3900
     gatagcaagg aattagagcg ttgcctaggc ctattctcat acttccgccg atttgtatca      3960
     ggtttcgcta agattgcgtg tccgctgtcc cgattgttaa gaaaagatac cccttatgtc      4020
     ttctccgatg aatgtcttga agccttccga acactgaagt tgaaattgat cgaatccccc      4080
     gtgttatcta tttacaaccc gaagtctgaa acagagttac actgcgatgc tagttcaatt      4140
     ggtttcggag cagtgctcct ccagaaacaa acagacggta aattacaccc agtgtcctac      4200
     ttctctaaga tggcctccgc cgctgaatcg aaactacaca gttatgagct agagacgtta      4260
     gctatagtgt attccttaaa acgttttgag acgtacctta agttcatccc gttcaaaatc      4320
     gtgaccgatt gtaattccct tgcgctgaca ctgagaaatg gtggacattc cgccaagatt      4380
     gctcgctggg ccctgctgtt ggaaaactat aactacacga ttgtacaccg ctcgggggtt      4440
     ggtatgcccc atgctgatgc tctaagtaga atagaaactg ccgcatacgt tgacgatata      4500
     aaccttgact tccaactgca gttaacccag aaccgggacc ctgagattgt caaactccga      4560
     gatgagttag agaaatatga gatagcgaat ttcgaactgc gagatggagt agtgtaccgc      4620
     ctgtcctcga cgagtatacc ccaactttat gtcccttccg aaatggtaaa tcatgtcata      4680
     cgagtagtgc acgagaagct tggccatatg gccacggaga aatgttgtgc acagatcaag      4740
     aagcattact ggttcccgtg tatgaagtct tacgttaaca attacattaa aaattgcctc      4800
     aagtgtatct actactccgc gtccgcttcg gaccaccgtg tcacgctaca tagtattccg      4860
     aaagtgcccc ttccgtttga taccgtccat attgaccatt tgggccccct tccgtccata      4920
     cgttctaaga aaaagtatct tctggttgtc attgacgctt tcaccaaatt tgtgaagctg      4980
     taccctgccg ccacgactaa ttcacgtgaa gtatgccaga cattagaatc tcagtatttc      5040
     gcaaattaca gtagaccccg ccgaatcatc agtgatcgag gtacctgctt tacttcctcc      5100
     gagtttgaag aatttctgaa ggccaataat ataattcatg tgctgaatgc cactgcctca      5160
     ccccgggcca acggccaagt cgaacgggtt aaccgtgtgt tgggccccat gttgggtaaa      5220
     ctgacggaac ctgtggacca cgcagattgg gtccaacaac tgccgaacat agagtttgca      5280
     ttgaataact ccgtccactc cacaaccaaa tttgccgctt ccgtacttct attcggtgtt      5340
     gaacaacgag gtgtggtagt agatgaacta accgaacggt tgggtgagag aactgaggag      5400
     gtcgatgcct cagaggtaga cgtccggaga ttagccttcc gtaacattgt taagtcccaa      5460
     gaatataatt cggaatatta ttcgaagcat cacctccctg ccgttagttt tgaggagggg      5520
     gatttcgtag ttattaagaa tgtggatact tcggcaggca cgaacaaaaa gcttatcagg      5580
     cggtatcgtg gtccgtatgt ggttcataag aaacttccga atgaccgata tgttatccgg      5640
     gatgtagagg gctcccaaat cacccaacta ccatatgatg gggtcctaga agcctccaaa      5700
     ttaaagctat gggttgcccc tgatcaagat tgcacttctg ataaccaaac aaaggcgaca      5760
     ccagccactt aagattctta tttaccccct tcattgttaa caattggaat cgaggtcgat      5820
     tcctcgtcag gacggccgag t                                                5841
//
ID   Gypsy-12_DWil-LTR repbase;    DNA;    INV; 285 BP.
XX
AC   scaffold_180716;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_DWil_;
KW   Gypsy-12_DWil-I; Gypsy-12_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-285
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180716; Positions   21168   20884.
XX
SQ   Sequence 285 BP; 95 A; 44 C; 49 G; 97 T; 0 other;
     tgtaagattc caattattta aagtctgtta aatactcatg catatatcga ttgttagtaa        60
     taagtatcga ttgttagtaa taagtatcga ttgttagaaa taagtatcga ttgttagtaa       120
     taagtatcga ttgttagcga taagtcctcg ataggttgag agacggcgtc tctcttttct       180
     tccggcgacg caacgagcaa gttgcatctg caaaaaaccc aaagatttaa tccgaccaat       240
     acaaactaat ctttatcatt tttacttaat aaataggtgt ttaca                       285
//
ID   Gypsy-12_HeAr-I repbase;    DNA;    INV; 6148 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6148
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5560-5560 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..4904
FT                 /product="Gypsy-12_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEGDSDYMQSSRKNTSRKRRRRHSKNADRKTETSKRR
FT                 HHTKSKHVSDERRDGVQNKGEKGRRTSRKFRRRSSSRHRSRSRSSCSSGAG
FT                 LTPPRPHSRSKSLRSRRADLTPGRTHGRSRSLSSHLTDSSRRTSHSRSSSR
FT                 CQRSSRLRHRDRTRRHQSMSPEDNKVSRSNFKDTTFLLTELIKSISSSRSE
FT                 GNKFPMLGNVIPEFDPMSKGQTIEMWLNKVEECAQLYKWGDDQIIHYALPK
FT                 LSGVSRTWYQSLPSMSFSWTEWKYKLRESFPSTDDYAELLNEMLSKRVKFN
FT                 ESLELYFYEKINLLNRCDIKGKRAVDCLLHGIEDRSIRLGAKATKCEEPEQ
FT                 VLKYFQSIKQQSRELHFKTRNNFDKRNNNNIPNNISHNISRNTKPYERTKS
FT                 ITCFNCNETGHYSYNCQKKEIKCSNCNRLGHLANVCKDASKKENEKSVMAL
FT                 STNMNENDKYHINLKINGQPLQGYVDLGSQCTLLRHSAAEKLGIHWSSEQP
FT                 LPTMRGIGNHVVLPLGKVTINIEIQGIMQSVDSYIVENNVIKYDILIGHSF
FT                 TESPGITITKTTDALIFRRAVPTKLRLILLNDILIPPKETYVIKVKSDVSY
FT                 SGTINVNGSLRGYDGKEYYLMPGEYNVVNGVSALLIQNLSNNNLSLKLGSL
FT                 ITRALLTDSILDVNLLDFSDTNISNSINYDNKLSNEEIFQLKNILQKYSQC
FT                 FSCNMMDLGYTNIEKMEIELIDTTPVVYRPYRLSYPERELVKSMVQEMLAA
FT                 DIICESNSAYASPVLLVKKKTGDKRLCIDYRALNRKTKKEHFPLPLIDDQL
FT                 DRLAGHSLFISLDLASGYYQLAVGEGSQDKTAFVTPDGQYQFKRMPFGLAN
FT                 APSVFQRTMNKILAKIDYALVYMDDILIPAHTFNEGLKRLDEVLSIIRDAN
FT                 LTLKLEKCFFFYTQIDFLGFEVSGLGIRPGSRKITAVTNFPTPNNVHDVRR
FT                 FIGLASFFRRFVKDFSLIARPLTDLLRKRITWKWSDEQVTAFETLKRKLVE
FT                 RPLLALYDPKLETELHTDASKHGIAGILMQRNKEGIINPVAYYSRKTSADE
FT                 QKLHSFDLETLAVIASLNRFRVYLLGLKFKIVTDCNALRTTMTKRDLIPRI
FT                 GRWWVQLQEYDCEIEYRAGSRMSHVDALSRAPVDEPTTLDSIHVIDVLAVE
FT                 AQDWIATVQSDDEEVKRIKEILASKDTTFIVDVHKNYQLKGNYVYRIVDGG
FT                 LRWVVPRSVRWQLLKMNHDDVGHFSYDKTLNRLKGSFWFPKMRRFTKKYVK
FT                 ACLECAYHKAPGGPKEGQLHPIPKPDIPFHTLHADHLGPFVRSRRGNMYLL
FT                 VIIDAFTKFISIRPVRDTKTATAIRVLKDYFSYFGAPTRLITDRGTCFTSS
FT                 KFKTFVKDSSIKHILNAVATPRANGQVERFNRTISDALSAKCHDKNDNTWD
FT                 EYVSEVQLGLNTSINKSTGKSPSELLFGYNVKTVSENILGDVINTTVDRIS
FT                 GEELTDLRNESLRKIGNAQKLAKDRYDKHRKLATKYNEGDLVRLERTTFDK
FT                 DRIGKSKKLIAKFHGPYKIVKILPNDRFLVEDTPITRKKGKKYENVVSIDK
FT                 IHPWLNFKSLDSENDSDGNDKSDMD"
XX
SQ   Sequence 6148 BP; 2060 A; 1026 C; 1262 G; 1799 T; 1 other;
     gtttcagaag tggtataaga cctttgctaa ttatttccgc attattctca tcctgagaaa        60
     aagttttcta gcactagcga aactatatat tagtgtgaga acattgttta tgcatcgtga       120
     actacattat ggagggcgac agtgattata tgcaaagtag tcgcaaaaat acatcacgta       180
     aacgacgccg tcgacactca aaaaacgcgg atcgtaaaac agaaacgagt aagagacgcc       240
     atcatacgaa atcaaaacat gtttcggatg aaagaaggga tggagtacag aacaaaggag       300
     aaaagggccg tcgtacgtct cggaagttta gacgtcgttc gagttcgagg catcggagtc       360
     ggtcgagatc gtcgtgcagc tctggtgcag gcttgacgcc gcccagacca catagccgtt       420
     cgaaatcact gcgcagccgt cgtgcagact tgacaccagg aaggactcat ggccgatcga       480
     ggtcattgag cagccatctt acggattcgt cgcgacgtac gtctcatagc cgttcgagtt       540
     cgcgctgcca gcgtagttcg agactacgac atcgtgaccg cacacgtcgt caccagagta       600
     tgtcaccaga agataacaaa gtgagtcgtt ccaattttaa agacactaca tttttgctaa       660
     ctgaattgat taaatcaata tctagtagtc gttccgaagg aaataagttc cccatgttag       720
     gcaatgtgat accagagttt gatcccatgt ctaaaggcca aactattgag atgtggctta       780
     ataaagtgga agaatgtgct caattgtata aatggggaga tgatcagata attcattatg       840
     ctcttcctaa acttagtggt gtatcccgga catggtatca gagtctccca tcgatgtcgt       900
     tttcgtggac cgaatggaaa tataaattaa gggagtcatt cccgtccact gatgattatg       960
     cagaactcct taacgaaatg ttgtcaaaaa gggttaaatt taacgaatct ttagaattat      1020
     atttctatga aaaaatcaac ctccttaata gatgtgacat aaaaggtaaa agggcagtag      1080
     attgcctact acacggaata gaagaccgca gtataagatt aggtgctaaa gcaacaaaat      1140
     gtgaagaacc ggaacaagtt ttgaaatatt tccaatcaat taaacagcaa tctcgagagt      1200
     tacattttaa aacaaggaac aactttgata aaaggaacaa taataacata ccaaataaca      1260
     tatcacataa catatcaagg aacacaaaac cttatgaaag gaccaaatct ataacatgtt      1320
     ttaattgtaa tgaaaccggc cattatagtt ataactgtca aaaaaaagaa attaagtgta      1380
     gtaattgcaa tagacttgga catttagcta atgtttgtaa agatgcatca aaaaaagaaa      1440
     atgaaaagtc agttatggca ttatctacaa atatgaatga aaatgataaa tatcatatta      1500
     atttaaaaat aaatggtcag cctttacaag ggtatgttga tttgggtagc cagtgcacct      1560
     tgttacgtca tagtgctgca gagaaattag gtatccattg gtcttcagaa caaccattac      1620
     ctacaatgcg tggcattggc aatcatgttg ttttaccact cggtaaagta actattaata      1680
     ttgaaattca gggtattatg caatcagttg acagttatat tgttgagaat aatgttatta      1740
     agtatgacat attaattggc catagtttta ctgaatctcc aggcataacc ataactaaaa      1800
     ccactgatgc tttgattttt agacgagccg taccaacaaa attaagactt attcttttaa      1860
     atgatatttt gattcctcca aaggagacat atgtgataaa ggtaaaaagt gatgttagtt      1920
     attcaggcac aataaatgtt aacggctctc tacgtgggta tgatggtaaa gaatactatc      1980
     ttatgcctgg tgaatacaac gtagtgaatg gagtcagcgc attattgata caaaacctat      2040
     caaataataa tttatcgtta aaacttgggt cattaataac acgtgcctta ctcacagatt      2100
     ctatattaga tgtaaattta ttagatttta gtgatacaaa tattagtaat tcaataaact      2160
     atgacaacaa attatccaat gaagaaatat ttcaacttaa aaatatctta caaaagtaca      2220
     gccaatgttt ttcttgcaat atgatggatt taggttatac caacattgaa aaaatggaaa      2280
     ttgaattgat tgatacaaca cctgttgtat acagaccata tagattatct tacccggaga      2340
     gagaattagt aaaatccatg gttcaggaaa tgcttgccgc agacattatt tgtgaatcca      2400
     attcggcata tgctagccca gtccttttag ttaagaagaa aacaggtgac aaaagacttt      2460
     gtattgacta tcgagcactg aatagaaaaa ctaaaaagga gcattttccc cttccactga      2520
     ttgatgatca actagatcga ttagctggtc attctttgtt cattagctta gatttagcat      2580
     caggctacta ccaattagct gttggggagg gttcccaaga taagacggca tttgttacgc      2640
     cggatggcca atatcagttc aagagaatgc cattcggttt agctaatgca ccatcagtct      2700
     ttcaaaggac aatgaacaaa atactagcta aaatagatta tgcccttgtt tacatggatg      2760
     atattttaat cccagcacac acgtttaatg aaggtttaaa aagattagat gaagttttga      2820
     gtattatccg tgatgctaat ctcactctaa aattagaaaa atgcttcttc ttttatacac      2880
     agattgattt cttaggcttt gaggtaagcg gattgggcat aagacccggt tcccgcaaaa      2940
     taactgcagt aacaaacttc ccgactccaa acaatgtcca tgacgttaga cgtttcatag      3000
     gtttagccag tttttttcga cgttttgtaa aggatttctc cctgattgca cgtccgctaa      3060
     ccgatttgtt aagaaaacgg attacatgga aatggtcaga cgaacaagtg acagcgtttg      3120
     agactctaaa acgtaaattg gtcgagagac cattactcgc actatatgat cccaagttag      3180
     aaactgagct acacacagat gcgtcaaaac atggtattgc aggcatccta atgcagcgta      3240
     acaaagaagg aataattaac cccgtagcat attacagccg caaaacatcg gctgatgagc      3300
     aaaagcttca ctcctttgat ttagagaccc tagctgtcat agcatcgcta aacagatttc      3360
     gtgtgtatct attaggatta aaattcaaaa tagtgactga ctgcaatgcg ctccgaacta      3420
     ctatgacaaa aagagacctc atccctagaa taggtcggtg gtgggtgcaa ctccaggagt      3480
     acgactgtga aatagaatac agggcaggct caagaatgtc gcatgttgat gcactcagtc      3540
     gtgctcctgt tgacgaaccc actacccttg actctataca cgttattgat gtactcgctg      3600
     tagaagcaca agactggata gctacagttc aaagtgatga tgaagaagtt aaaagaatta      3660
     aggaaatttt agccagtaaa gacacaacat ttatagttga cgttcataaa aattaccaac      3720
     tgaaaggtaa ttatgtttat agaatagtag atggtggatt acgttgggta gtcccgagat      3780
     cggttaggtg gcaattacta aagatgaacc acgacgatgt gggtcatttt agttatgata      3840
     agacgctaaa tagactgaag ggttcatttt ggttccctaa aatgcgaaga ttcacaaaaa      3900
     agtatgttaa agcttgctta gaatgtgcgt atcataaggc acccggagga cctaaagaag      3960
     gacaacttca tccgattcca aaaccggaca taccgtttca cacgttgcat gccgaccacc      4020
     taggtccatt cgttcgttcg cggagaggca acatgtacct tttggtaatc atagacgctt      4080
     ttacaaaatt tatcagtata agacctgtca gagacacaaa gactgctact gccattagag      4140
     tcttaaagga ttattttagc tattttggag cacccactcg attaattaca gacaggggga      4200
     cgtgttttac tagctccaaa tttaaaactt ttgtaaaaga tagtagtatt aaacacatat      4260
     taaatgctgt cgcaactccg cgagcgaacg gccaagttga aagattcaat agaactattt      4320
     cagacgctct tagtgcaaag tgtcatgata aaaatgataa cacctgggat gaatatgtta      4380
     gtgaggttca gttaggatta aacacatcaa ttaataaaag tactggtaaa agcccatctg      4440
     aattattgtt tggttacaac gttaaaaccg tatctgagaa tatattaggc gatgtaatta      4500
     atacaactgt ggatcgaatt agcggtgagg aattgacaga tctaagaaat gaatctctac      4560
     gtaaaattgg aaatgcacag aaattagcta aagatcgata cgataagcat agaaagttag      4620
     ctacaaaata caatgagggt gatctcgtta gattagaaag aactacattt gataaagata      4680
     ggatcgggaa atcgaagaaa ctgatagcta aatttcacgg accttataaa attgttaaaa      4740
     tattacccaa tgatagattt ttggttgaag atactcccat tacaagaaag aaaggtaaaa      4800
     agtacgaaaa cgtagtatct attgataaaa tacacccgtg gttgaatttt aaatccttgg      4860
     atagcgaaaa cgacagcgat gggaacgaca agagtgatat ggattgactg ttagaattaa      4920
     agaatgttaa aattaaaatt agtgtagtag taagatgatg taaaattata tattgaatac      4980
     cagagttagt gcttatttga tgatgatgaa gcagatcatg acagactaca ctagtgtagg      5040
     ttgtgagctt gttgggatac tagaagcaga tcatgacaga ctacactagt gtaggttgtg      5100
     agcttgttga gatactagaa gcagatcatg acagactaca ctagtgtagg ttgtgagctt      5160
     gtkgggatac tagaagcaga tcatgacaga ctacactagt gtaggttgtg agcttgtggg      5220
     gatactagaa gcagatcatg acagactaca ctagtgtagg ttgtgagctt gttgggatac      5280
     tagaagcaga tcatgacaga ctacactagt gtaggttgtg agcttgttgg gatactagaa      5340
     gcagatcatg acagactaca ctagtgtagg ttgtgagctt ctgaggtcct gttgtgaaga      5400
     tatttgtaca gatgacacag atcatgactg actctagggt catgtgtgtt agtgcatacc      5460
     aaacaggcga cgcagatcgc atcagactat actagacata gatcgcagat tgcgattcaa      5520
     tgtcggtatg ggatgcgagc gtcagtgatg ttaattgtga atgaatgtcc ctagggaata      5580
     gaagattgtt cattttgttt tgtttctttt tattatttta tgttattaac ttgaatttat      5640
     gttattctta ttttaatgct taactgatat aagagagaaa tatccccatg agaggctcaa      5700
     ttgcattatt gattaacctt ggtgtgagga cacaccctga ctaggatggc cgagcatttt      5760
     tgttatgtta tttgtgatca ttcctgtgta ccgtattata aagactgact attgtaattt      5820
     atagatagtt aaagaaagct tgtagtgaga cttaagtatg ctgtgaactc tttttattat      5880
     tataattatt ttgttctatg tttatgtttt aaaattacct catgttatgt tgctcgactt      5940
     gatacttcag tacctgctta cctattctta ttaaatttaa gatcttcagt taggctgaag      6000
     tgtactgtat ttaatttttt ttatgtttgg aagttatata atttttgtta tgctactcta      6060
     cttgataatt tggttcctat ttgtttgtac taagtatatt gatactctaa gatggtgtga      6120
     ggacacaccc taattaggat ggccgagc                                         6148
//
ID   Gypsy-12_HeAr-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-234
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5590-5590 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 234 BP; 89 A; 20 C; 49 G; 76 T; 0 other;
     tgttagcatc gacatagaat atctgttgat tttaatatta atgactagca acactgacaa        60
     aaagcgggag gtcgaactgt caaagtgaaa aaaagaatgg aagttttgtt tgttaaaaag       120
     tttaagaaag ttgtaagaaa ttaaaacaag tgttgattgt tatgttgtga ttctgagaga       180
     ataaaacttt atttaagata cttttggtgc agttttaatg gaagaagact taca             234
//
ID   Gypsy-12_Hm repbase;    DNA;    INV; 3066 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy-12_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3066
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2346..1120
FT                 /product="Gypsy-12_Hm_1p"
FT                 /translation="IKMSELDNIFKALRLVPEFDGNSNVLPRFISLCDQLV
FT                 QEFISNNPXNNLVSIALANGILNKVTGSAARLINTSGIPSDWSGIRKSLIN
FT                 NFSDQRDETALYNDLSLLTQGSNTPQEFYERCQNLFSTIMTYITLHEEIGT
FT                 TIEAKRILYQKLTLQAFLRGLKDPLGSRIRCMRPETIEKALEFVQDELNTM
FT                 YLQARNEPDRTKHPQNFSSQSFKVNNFNNHIPQFKPHFQANYPLRNNFITN
FT                 PQQTLHRQHLGPTRTQQIFRAQPPNYNPHNAFRIIPRNAPPQFNSTSQAPR
FT                 PMSGVSNFVPRNLPPTRHIPGHDWSKHGNPPPSNYFKTREMNFHDSDLYDQ
FT                 YYDYYDYYDDNEYYNYDDYYYANPYYSSEPPQELSQNCEQIVEEPSSSTLN
FT                 KEEDFQKLKILDKPK"
XX
SQ   Sequence 3066 BP; 938 A; 481 C; 563 G; 1063 T; 21 other;
     caaggtctaa tgtactraaa tattgacaat tacctaattt rtcyaaaata tccgatatat        60
     tcggtatagg atacttatcg tcaatcgttt tttcrttaac tttacgaaaa tctatgacaa       120
     tgcgccactt agtttttcck gaagcgtcgc ttttctttgg aacgatccat atgggagagc       180
     tccaagctga gtctgagggt ctrataattc cttgatctaa catgctctga atttgttccc       240
     tracttcctg tctaygtata aaaggatacc tatagctttt agtatatacg ggtatttcat       300
     ctstcgtttt aatcgaatgc ttaattgtat tgctaaacgt taaggtttcg ccttctaaat       360
     aaaatatatc ygaataacga ccacaaagcg tttctaaatt aattctttct tcctcattta       420
     aatggctagt ccgtaaacgg gagagaacat ctttttcgcg ttctatcatt cgctyggtat       480
     gcttatattc gatatkattc aattccgcct ggataggttt rtcgatagaa aaaatkatgt       540
     cattgcgtgt ggggttataa atttctaaaa tagctctgtt atttttcgcr caagttaaac       600
     aytcytttat aatacaacta gagattactt gttctgggat aaaaatttca ccttcacgaa       660
     tattaattgg taattttast aatttcgagg tacctgccgg tataatattt tcgtacaaat       720
     ttaaattaca cgaattataa atttgaatag ggttgcacgc gtttgaagta acaaataatt       780
     ttcttttata atcgatagtc gcttcccatt tatctaataa atccgtaccg attaaaccgt       840
     caaaataatt atggaactta tatataaaaa atgtaatgct atctttacta ttaaattcag       900
     gaaaactggg aattgttacg gaatacttat gtctacttac agcgtgtacg ttacttactt       960
     cgaaaggatc atattttaaa gaaaatttat taaaatattt ttctactgca tctggactta      1020
     taaaagattg attcgcgccg gtatcgataa gcaattttag agggggattt ttaatctgaa      1080
     tatagggaag ttgacgttga gtttggagat taagttctat tttggtttgt ctaaaatttt      1140
     gagtttctga aaatcctctt ctttattaag ggttgatgac gaaggttcct ctacaatttg      1200
     ttcgcaattt tgagataatt cttggggtgg ttcgctacta taatatggat ttgcgtaata      1260
     ataatcgtcg taattataat attcattatc gtcataataa tcataatagt catagtactg      1320
     gtcataaagg tcactgtcgt ggaaattcat ttcccttgtt ttaaaataat tcgacggtgg      1380
     tgggtttccg tgcttactcc aatcatgtcc tggaatatgt ctagtaggtg gtaaatttct      1440
     aggtacaaaa ttactaacac cgctcatagg acgaggtgcc tgagaggtcg agttaaattg      1500
     tgggggtgca ttacgtggga taattctaaa tgcattatgg ggattataat ttgggggttg      1560
     tgctctaaat atttgttgag tacgtgttgg gcctaagtgt tgtctatgta atgtctgttg      1620
     tgggttagtt ataaaattat tacgaagtgg ataattagct tgaaaatgtg gcttaaactg      1680
     tggaatgtgg ttattaaaat tatttacctt aaaagactga gaagaaaagt tctgggggtg      1740
     ctttgtcctg tcgggttcat ttcgagcctg taaatacata gtatttaatt cgtcttgaac      1800
     gaattctaac gctttttcta tggtttccgg cctcatgcat cgtatgcgtg agcctaaggg      1860
     gtcctttaaa cctcttaaaa acgcttgcaa agttaatttc tgatataaaa ttcttttagc      1920
     ttctattgta gtaccaattt cctcatgcaa tgtaatatat gtcattattg tactaaataa      1980
     attttggcaa cgttcataaa attcctgagg ggtattagat ccctgtgtta aaagagagag      2040
     atcattgtac aacgcagttt catcgcgttg atctgaaaaa ttattaatta gcgacttacg      2100
     aatgccactc cagtctgatg gaataccact tgtatttatt aagcgtgccg ctgagcctgt      2160
     tactttattt aaaatrccat ttgcaagagc aatactaact aaattattwt cgggattatt      2220
     actaataaat tcctgtacca attgatcgca taaactaata aatctgggta aaacatttga      2280
     atttccgtca aattcgggca ctaggcgtaa agctttaaaa atgttatcta attccgacat      2340
     tttaatttaa ttatattcta ttyaattata taataaaaaa attaattacg ttataataat      2400
     aattgctaaa cctatatatc ttagattacc gaaaaaggaa atttaagaac cgcgttttta      2460
     ttcgtattaa acctaaatta atattaaaaa atctccaatt gccacaaaag ggaaacggaa      2520
     aaaaggaaac ttaaaaatac gggtaagcaa tcactagaaa gattctaatg tacttactgg      2580
     gttaaatctg ttttctctgg tgcatcaatg tctggatact cctgcgccgc ctcgtagatt      2640
     ctggatactc gtgctggtgc ttgagagcca cccgggtggt ccgcggagac gttaaattcg      2700
     atattcccga attttaagtt acgttgctcg cgacccggcc cgcgagtatc ctaccgactg      2760
     cgccaattat gtacggtggc agcgtaggtt ccaaaaaaac cgattttact taaaaatatt      2820
     ttattaaaat taacttatta ttacaaaagg tgagacttgc tcaaagtcgg agacaagaat      2880
     gattttatat tctacattta attctaattt taattataac agcaggtgcg gggattcaaa      2940
     taacaattcc aagatttaag agaattgtgc aatgtattaa ttggaaatga aattatgggt      3000
     aatgttgtgg gacatgttct gggtggtcct aggtcagcga ttcccgggtt gtgtgggaac      3060
     gtaaca                                                                 3066
//
ID   Gypsy-12_LH-I repbase;    DNA;    INV; 5056 BP.
XX
AC   ADOQ01017088;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_LH_;
KW   Gypsy-12_LH-LTR; Gypsy-12_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5056
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017088; Positions    2740    7795.
XX
CC   Positions [3874-4347] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(358..2175,2179..4737)
FT                 /product="Gypsy-12_LH-I_1p"
FT                 /translation="MDRRRLEDLSLAGLQSEARRYGLEPKTTKRTVIDQIM
FT                 SHLKDNGLLSDAQLTENLPDPHITESSKEIFSHQAAGAANSSSSSGFQSES
FT                 GNGAVTQLCALFAGMMNQQQERFIAQQREMMDHQREMWTQVAASLNRGNSV
FT                 GQMNTSVSQSAVANDQTNGSARARGAILSSVPTAQAISILSKQISSFSGAE
FT                 DECVESWLDKVERVAQVHGAVDDVILMAASDKLTKLARYWFDLNAGSVNDT
FT                 WDNFRSAISRRFQRSVPYRIIIQKVEARRWNMYKETFQEYASHKLKLMQNL
FT                 KLPDREAIYFLINGINTPALRGMAALLKADTIDQFLEQMHNLVIVYDDSGR
FT                 KSPPASKKMDKERPKGPRGAPEKPNTSTSSSKDTYCVYCRTKGHVRADCYR
FT                 LKRKEEQSSSSSTSKSVSSVSAVDDASSKAEAVACVSESVRLEVCDTKLKV
FT                 IELNNVKCSLYALLDTGSPVSFINPKVYKLYFKKPSTSLSAMDSPYKALNH
FT                 TPIHVIGSVSTCIKLEKLSDLSLKVNLQVLQDDRLSIDLLIGRDFFQVNKL
FT                 SVLYNPTSKEEQTLRLFSEVASAESVSDVHHEVKATMTEVNTDFDFNTNQR
FT                 LLTVIKEVDMEVTPIQDDYSVTVALKDDSIYAYAPRRFAWTERVQIREIVD
FT                 DLLERGIVKPSVSPYCARVVPVRKKNGTLRLCVDLRPLNARVVKQKYPFPL
FT                 IEDCLARLSNKRIFSLLDLKDGFHQIKVHPDHTKYFAFATPDGQFEFNRLP
FT                 FGFCEAPAEFQKRLIYIFQPLIREDKIIVYIDDILIPSVTVDENLSILKQV
FT                 LSLLKRYGFQLNYEKCLFLRIKIEYLGYILSPYGITLSSRHTEAIKNFPQP
FT                 KKVVELQRFLGLTGYFRKFIKNYALIAKPLQNLLRKETEFNFDDSCDRAFN
FT                 TLKQELVVYPVLRLYNPFAETELHTDASSVALAAILFQKQKTGQWAPVAYY
FT                 SQTTNSAEAKYHSFELEMLAIVKSAERFHMYLYGLEFTVVTDCHALVYAVN
FT                 KAHLNPRIARWTLRLQNYKFKVIHRAGHRMTHVDALSRIAAYVNAMPLERE
FT                 LEFRQLLDLRLKKIAEDLEFADNEKFELIDGLVYHKSQDKPRFAVPDSMVD
FT                 NIIRAHHNEMAHCGLEKTLQGVSVNYWFPSMRKRIQDYISNCLDCLVSNNS
FT                 ANSKEGEMQITDSPTEPFRILHIDHFGPLTETPKGFKHILVAIDAFTRYTW
FT                 FFAVKSTGSKEMIEHFTMLFHMFGNPDLIVSDRGTAFTSQEFAEFLLSKNV
FT                 KHRLVAVAAPWANGLAERANKFLKSSLKKIVEEQQDWHACLSTVQYVVNNT
FT                 HHASLQASPSKILLGYDQRNHSDAALVKLLYKIAKVELDCYKERDLTRELA
FT                 IEVTNKIKHYNKQYYDKRHKKPTLYKPGDYVMIRDSVIKPGEDRKLKPIYK
FT                 GPYKVSKVLNKNRYVVQDIPGHNVTSRPYNSILSPDRMKLWVTPP"
XX
SQ   Sequence 5056 BP; 1553 A; 976 C; 1135 G; 1392 T; 0 other;
     taaaagtatg attttacagt tcagaagtgt gattagataa cggacctcgt gtggattttt        60
     atggctcagc catattgaac attcagagcc gcgacgtgca gtgaaaacgg ccatattgga       120
     cgtcgtgtga gaaggaagct gcctattggc tgtgcactta gcgtctaatt tttcgctgtt       180
     tgttgctaac agaagtggtt ttggtgaaaa aaaactggag aaaagggcat tattggttag       240
     cccagtgcct tgagaacatc ttagagattc gagacacgca gctttagaga aggctgttct       300
     cctttccata agtgttccgc ggacggtttg taggacttgc acgtcacgcc attcgtgatg       360
     gatcgacgtc gcttggagga cctctcgcta gccggactac agagcgaggc tcgacgttac       420
     ggtctcgagc cgaagacgac caaaagaacg gtaatcgacc aaataatgtc acatctcaaa       480
     gacaacggct tattaagtga cgcgcagctg accgagaatc taccagatcc tcacatcacg       540
     gaatcttcca aagaaatctt ttcacatcaa gctgcgggag ctgctaattc ctcgtctagt       600
     agtggatttc aatctgaaag tggcaatggg gctgtgacgc agttgtgtgc cttatttgcc       660
     ggaatgatga accaacagca agaaagattt atagctcaac aaagggaaat gatggatcat       720
     caacgtgaaa tgtggacaca agtagccgct tcgctgaata gaggcaatag cgtaggccag       780
     atgaatacgt ccgtatctca atcggcggta gccaatgacc agacgaatgg atccgcacgc       840
     gcgagaggtg ctatcttatc gtcggttcct acggcccaag cgatcagtat actttctaaa       900
     caaatttcgt cttttagcgg tgctgaggac gagtgtgttg aatcatggct cgataaagtg       960
     gaacgagtag cacaggtaca tggcgccgtc gatgatgtaa tcttaatggc tgcttcggat      1020
     aaactaacga agctcgcacg atattggttt gatttgaacg caggttcagt aaacgatacg      1080
     tgggacaatt ttagaagtgc aatctctaga agatttcaaa gaagcgttcc ttatcgtatc      1140
     ataattcaaa aagtggaagc acgaagatgg aacatgtaca aagaaacatt ccaggaatat      1200
     gcttcacaca aactgaaact tatgcagaat ctcaaactgc cagatcggga ggcaatatat      1260
     ttcctgatta atggaataaa cactcctgct cttcgtggga tggccgcgtt gctgaaggcg      1320
     gacactattg atcagttcct tgagcaaatg cataatttag tcatagtgta cgatgactcg      1380
     ggtagaaagt ctccaccggc atcgaagaag atggataagg agaggcccaa aggccctaga      1440
     ggcgcgccgg agaagcctaa cacgtcgacg agttcatcaa aggacaccta ctgcgtatac      1500
     tgtcgcacca aagggcacgt acgagcagat tgttaccggt tgaagaggaa ggaggagcag      1560
     agcagttcgt cgtctacctc taagtccgtt tcgtcggtgt cagcagtgga cgacgcgtcg      1620
     tccaaggcag aagcagttgc gtgtgtcagt gaaagtgtta ggttagaggt atgcgatacc      1680
     aaactaaaag taattgaatt gaacaatgtc aagtgttcgt tatatgcgtt attagatacc      1740
     ggcagtcccg tatctttcat aaatcctaag gtgtataagt tatattttaa gaaaccgagt      1800
     acatctctta gtgctatgga cagtccatat aaagcgttaa atcatacacc aattcatgtc      1860
     attggttcgg tatcaacttg cattaaatta gaaaaattat ctgatttatc tttaaaggtg      1920
     aatttacagg tattgcaaga cgatcgattg tctattgatt tgctaattgg tcgagatttt      1980
     ttccaggtca ataaattatc cgttctctac aatccgacaa gcaaggaaga acaaacttta      2040
     cgtttgtttt ctgaagttgc gtcggccgaa agcgtcagtg atgtacacca tgaggtaaag      2100
     gcaactatga cggaagttaa cacggatttc gattttaata cgaatcaaag attattaacc      2160
     gtcataaaag aagtttaaga tatggaagta acgccgatcc aggacgatta ttcggtaacc      2220
     gtagcactaa aagatgactc aatatatgcg tatgctcctc gacgattcgc gtggactgag      2280
     agagtccaaa ttagggaaat tgtagatgat ctactggaga gaggaatagt aaagcctagc      2340
     gtgtccccct attgtgcacg tgtagtgcca gtcagaaaga aaaatgggac attacgttta      2400
     tgtgtagatt tgcgtcctct caacgcgcgc gtcgttaagc aaaaataccc cttcccgctg      2460
     atagaagact gtctagcacg gttgagcaat aagaggatct tttcattgtt ggacttaaag      2520
     gatggctttc accaaataaa ggtccatccg gatcatacaa aatatttcgc ctttgccaca      2580
     ccggacggac agttcgaatt taatcgactt ccttttggat tttgcgaggc cccggccgaa      2640
     tttcaaaaaa gattgattta catttttcaa ccgttaatta gagaggataa gatcatagta      2700
     tatatcgacg atatcttgat cccctcagtt acagtggatg aaaatttgag tattttgaaa      2760
     caggtactct cgttgctcaa gcgctatgga ttccagctta attatgagaa atgtctcttt      2820
     ctaagaatca aaatagagta tcttggatac attctatccc cgtatgggat cactttgagt      2880
     tctcgacata cagaggcaat caaaaatttc cctcaaccaa agaaggtggt ggaactccag      2940
     cggtttctag gcctcacagg ttatttccgt aaattcataa aaaactacgc attaatagca      3000
     aagcctctac aaaacttact gcgtaaagaa actgaattta acttcgatga cagttgtgat      3060
     cgagctttta atactttaaa acaggaatta gttgtatatc cggtattacg actgtataat      3120
     ccatttgcag agactgagct gcatacggat gcgagctcag tggcattggc agcaattctt      3180
     tttcaaaaac aaaaaactgg gcaatgggca cctgtcgcgt actacagtca aacaactaat      3240
     agcgccgaag ctaaatacca tagttttgag ttagagatgt tagcaatcgt aaaatcggcg      3300
     gaaagatttc acatgtatct atatggactt gaatttaccg tagttacgga ctgtcatgca      3360
     ttggtctacg cggtaaacaa ggcccatttg aatccgagaa tagcaaggtg gactctccgc      3420
     ctgcagaact ataaattcaa agtcatccat cgcgccggac acaggatgac ccatgtcgac      3480
     gccctgagca gaattgccgc ttatgtaaat gcaatgcctc tcgaaaggga actggagttc      3540
     cgtcaactgc ttgatcttcg attgaaaaag attgctgaag atttagagtt cgcggataac      3600
     gagaagttcg agctcatcga tgggctagtg tatcataaaa gtcaggataa acctcgtttt      3660
     gcggtccccg attcgatggt ggacaatatc attagagctc atcataatga aatggctcat      3720
     tgcggcttgg aaaagactct gcaaggagtt agtgtaaact attggtttcc gtcaatgcga      3780
     aaacgcattc aggactatat cagtaattgt ctggattgtc ttgtatccaa taattcggca      3840
     aattccaagg aaggcgaaat gcaaatcacc gacagtccaa cggaaccatt tcgaatttta      3900
     cacattgatc atttcggccc tttgacggag acgccaaaag gatttaaaca tattctggtt      3960
     gctattgatg cattcactag atacacgtgg ttcttcgcgg taaaatctac tggttccaaa      4020
     gaaatgattg aacacttcac gatgttgttc catatgtttg gaaacccaga cttaatagtc      4080
     tcagatcgag gtacagcatt tacctcccag gaatttgcgg agtttttact ttcaaagaat      4140
     gttaaacacc gattggtagc ggtagcagca ccatgggcga atggcttagc ggaaagagct      4200
     aataagttcc tcaaatcttc gttgaagaag attgttgagg aacaacagga ctggcacgcc      4260
     tgtctaagca ccgtgcaata tgtagttaat aatacacatc atgcatctct acaagcttct      4320
     ccctcaaaaa tattgttagg ctatgatcag cgtaaccact cggatgctgc tttagtcaag      4380
     cttttataca aaatcgctaa agtagagtta gattgctata aggaaagaga tttaacgaga      4440
     gaattggcaa tagaggttac taacaaaatt aagcattaca ataagcagta ttacgacaaa      4500
     agacacaaaa aaccaacatt gtacaagccg ggtgattacg taatgatcag agactctgtg      4560
     attaaaccag gggaggatag aaaattaaag cctatttata aaggtccgta taaagtatca      4620
     aaagtgttga ataagaatcg atacgtggtt caagacatac ccggacacaa cgtaacgtca      4680
     agaccgtata actccatatt gtcgccagat cgtatgaagt tgtgggtcac accaccgtga      4740
     tattgagcaa gagaaatagg tagttttaag cttaatatta taggattaag tttttgcgtt      4800
     taatattaag tatacaaaag actgtttatt gtaaggtttt caagcttttt ttttatgttc      4860
     attgcgctta aattttatag ttttgttttg cggtttaaag agttttattt ttttttgcga      4920
     tcaaaactgg atgcgataga attatcaacc taaattagtt taaccagacc ctgtttaaac      4980
     tttttgttaa agttaaatat gaattttgtt ttttcgatta taaaatcggg tcgatttatc      5040
     cttcaggctg gccgac                                                      5056
//
ID   Gypsy-12_LH-LTR repbase;    DNA;    INV; 523 BP.
XX
AC   ADOQ01017088;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_LH_;
KW   Gypsy-12_LH-I; Gypsy-12_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-523
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017088; Positions    2217    2739.
XX
SQ   Sequence 523 BP; 136 A; 104 C; 126 G; 157 T; 0 other;
     tgtaagaaag ttcggagtta agacgtcgag tctgcgttgt cacgcctagt ccctagaagc        60
     acgcctaacg cgtgattggt caatgtggcg aattataagt gcaatcactt tagcacgttt       120
     tgttttacgt atgattggtc gaggcggttg cctaggccaa taagaggctg aaatgccgca       180
     gcgaagaaga gagcagtgag tcggacatct acgagcacac gagtggtgtg ttctaggtta       240
     gagcttccta atatagtatt tttgtagccg ttcagtaaaa atatatttgt gataaaagtg       300
     aacgtatgag tatccacagt gagtatccgt tgcccgttcc tcctcattat cctgacaaga       360
     cgttcgtgta acgattacga cgttagttgt ttccacgccg tttcctaatc acttcgtggt       420
     tttacggatc ggaaatcgtc tctcgttttt ctacacggat ttatattcga ggggtattct       480
     atgaatgtta acgtacccga agcataacag cgtctaaaat tca                         523
//
ID   Gypsy-12_LMi-I repbase;    DNA;    INV; 4436 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4436
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3381-3381 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(63..2003,1882..2949,2886..4112)
FT                 /product="Gypsy-12_LMi-I_1p"
FT                 /translation="METLDQLLRTLIEQQTALVASLRDLPQTLTSVVSTSL
FT                 SSRVAPCSLPPFPPYEEAAEEWEDYEKRLRQHFVAFGVGDDQLCKSLFLSW
FT                 ISPKVYQLLSQLAPLRDPASLSFTEMCDMLSKYYRKNTHVVASRVAFYKCR
FT                 KQPHQSYRAWAAELQGLSRKCQFVTDVHHESYADSMVRDAILRLAPDKEVR
FT                 QRALQLPNPSLSEVLSIAQSYEISRAAGAQIDEYMDVSVVQSDAAPDDASV
FT                 SYDDGEVAAVHARQQRRAGQPRAKKKQQRQMQQPRQQNQVRSALPSCPRCF
FT                 IKHERVDCPQRWATCHTCHKKGHIASVCRSNKTPAVVEDDDSVMTVNCVLS
FT                 NTSKLYIDVQVLDKNIRMQVDTGSAVTLINSHTYLELGSPPLSPVTRNLRT
FT                 YNKQKIPIIGQFEASTSYKSVVRSLTFYVVDHAGTENLFGYDAFQLFGFSI
FT                 TDDVHLVSDDIPYTRLDALCTEFSSIFSPGLGRAVDFEAHITLKPAARPKF
FT                 FRARPLPVALRDPVKAELDRLVSLGALLPVTSSEWASPLVVVCKPNGKLRL
FT                 CGDFKKTVNAQCLIDTYPLPRPDELFAKLAGGQFFSKIDLSEAYHQLPLDA
FT                 DSRKFLVLNTPFGLYQYQRLPFGVASAGYISAFFRTTDGFRAWLHKLSRTL
FT                 RLACINTNGCRSALPAPAIFQRFLEQLTASVPGCINYQDDIVVTGASTDEH
FT                 LANLRALFQVLLSAGLKCNLAKSQFFQSSVVYLGFQLSRDGIRPLSQHVDA
FT                 IAALPRPSNVKDLQVFLGKIAYYHKFLPSAADVAHPLNQLLRKNIPFHWTD
FT                 ECERAFVRLKDQLQSAPCLVTFCPGRQLVLATDASQYGLGAVLAHRYDDGS
FT                 ERPIAYASKTLNDAQRRYSQIEKEALAIVYALKKFHVFLYGSKFHLITDHK
FT                 PLVSLFHPSASLPDKAAHRLQRWALYLSRFHYEIHYRPTAQHANADALSRL
FT                 PMGPDPVFDRDELLCFHVDEDERRAVDGFPITGDHVASATAETQFSVRWFS
FT                 NYGGPCCFCHSRDPVLCKVIRFIQRGWPDRPSGKASDPLRNYYALHLRLSV
FT                 RDGVVLLSTDGAFPRVVVPASLRQRVLQLLHQGHWGVSRTKNLARRHVYWP
FT                 GIDADISRMVALCTKCAQQSAAPRADPSPWPAPVRPWERVHADFAGPFLGA
FT                 YWFLVIDAYSNFPFVVRCASPSTAATTNALAKIFALEGLPSTLVTDNGPQF
FT                 SSQAFADFCSGLGVRHVTAPPFHPQSNGEVERLVRTFKCQMKKFLTEFSTE
FT                 DALLHFLSSYRFTPMGDHSPAELLHGQPRTLLHLLRSRQSQAVSQPPDKFR
FT                 VGAPVWVRGYGSRAKWIKGTIKKFRGRRLCDIRTDEGMVVRHFDQIRPRAV
FT                 DLPLSTLSPHRTIHTPSEANRHHLWVPPLLLTTPSTQHILQKMCFHHMS"
XX
SQ   Sequence 4436 BP; 943 A; 1209 C; 1063 G; 1221 T; 0 other;
     ctttaagtgg cgacgagttg tgaaatactc cacgcgttgt cgtcggcagt gttttgataa        60
     atatggagac cttagaccag ctattgcgca cgctcattga gcaacagact gccctcgtag       120
     cgtcgttacg tgacttacca cagacgctta cgtcagttgt gtcaacgtcg ttgtccagtc       180
     gggtcgcgcc gtgttctctg cctccattcc ctccatacga ggaagctgcg gaagaatggg       240
     aggactatga aaagcggctg cggcaacatt ttgtggcttt cggcgttggc gatgatcagc       300
     tgtgcaaatc tctgtttctt tcgtggattt ctccaaaagt gtatcaacta ttgtctcagc       360
     tagcccccct acgggatccg gcgtcgttat cttttactga aatgtgtgac atgctctcca       420
     aatattatcg caaaaacacc catgttgttg cttcccgggt ggctttttac aagtgccgca       480
     agcagccgca tcaatcatac cgtgcatggg ccgcggaatt acagggcctt agtagaaaat       540
     gtcaattcgt tacggacgtg catcatgagt cttatgccga ttccatggtt agagatgcta       600
     ttcttaggtt ggctccggat aaggaagtca gacaacgggc cctccagctc ccgaatccct       660
     ctttatctga agtattgagt attgcccagt cgtatgaaat ttctcgtgcc gccggcgccc       720
     aaattgacga atacatggac gtcagtgttg tgcagtctga tgccgcgcca gacgacgcgt       780
     ctgtttcgta tgatgatggg gaagttgccg ctgtacacgc gcgtcaacaa cgacgagcgg       840
     ggcaaccgcg cgctaaaaag aagcaacagc ggcagatgca gcagccgcgg cagcaaaatc       900
     aggtacgttc ggcgcttcca tcctgtccac gttgctttat caaacacgag agggtagatt       960
     gtcctcaacg ctgggccacg tgtcacacct gtcataagaa aggtcacatt gcctcagtct      1020
     gccggtctaa caagactcct gctgttgttg aagatgacga ctctgttatg actgtcaatt      1080
     gtgtactttc caatactagt aagttatata tagatgttca ggtccttgac aaaaatattc      1140
     gcatgcaggt agacacaggt tctgctgtca ctctcataaa ttcccacaca tacttggaat      1200
     tgggttctcc gccgttgtct cctgtcacgc gcaatttgcg gacttacaac aaacagaaaa      1260
     ttccgattat cggccagttt gaggcgtcca cttcttacaa gtcggttgtt cgttctctca      1320
     ccttttatgt tgttgatcat gcaggaacgg aaaacttgtt tgggtatgat gctttccaac      1380
     tttttggatt ctccattaca gacgatgtac atctggtatc tgatgatatt ccttacactc      1440
     ggttagatgc attgtgtact gaattttcct caattttctc tcccggcctg ggccgcgctg      1500
     tcgattttga ggcacatata acgctcaaac cggcggcccg cccgaaattt ttccgtgccc      1560
     gcccccttcc agtggcatta cgtgacccag tcaaggctga attagatagg ttggtgtctt      1620
     tgggggctct cctaccagtt acttctagtg aatgggcatc ccccctcgtt gtggtttgca      1680
     aacccaatgg caaattgcgg ttgtgtggcg atttcaaaaa gaccgtcaac gcccaatgtc      1740
     tcattgatac ttacccgctt cctcgtcctg acgagttgtt tgccaaactt gcgggcggtc      1800
     aattcttctc caaaattgat ttatcggagg catatcacca actgcctttg gacgcagatt      1860
     ccagaaaatt tctcgtctta aacactccgt ttggcctgta tcaataccaa cggttgccgt      1920
     tcggcgttgc cagcgccggc tatatttcag cgttttttag aacaactgac ggcttccgtg      1980
     cctggttgca taaactatca agatgatatc gtagttacgg gggcttccac ggatgagcac      2040
     cttgccaatc ttcgcgcgct ttttcaagtt ctcctgtcgg cggggttgaa gtgtaatctc      2100
     gctaaatctc aattttttca gtcttccgtt gtgtatctgg ggtttcaact gtcccgtgac      2160
     gggatccgcc ccttaagtca gcacgttgat gctatcgcgg ccctcccacg gccgtctaat      2220
     gttaaagacc ttcaggtatt tcttggcaaa attgcctact atcataaatt ccttccttct      2280
     gcggctgacg tggcccatcc attgaatcag ctgctccgta agaacattcc tttccactgg      2340
     actgacgaat gcgaacgtgc ctttgtccgc ctcaaagatc aacttcagtc ggcgccgtgt      2400
     ctagtcacgt tttgcccggg gcggcaactg gtgttggcca cggacgcgtc ccaatatggt      2460
     cttggggccg tccttgcaca ccgatatgat gatggatcag agcggcctat tgcttacgct      2520
     tcgaagacgc tcaacgatgc tcaaaggcgt tattctcaga ttgagaaaga ggcacttgcc      2580
     atagtgtatg ccttaaaaaa atttcacgtt ttcttgtatg gttccaagtt tcatctcatt      2640
     accgaccata agcctcttgt ctccctgttt catccttcag catcgcttcc ggataaagct      2700
     gcacacaggt tgcaacgttg ggctttatac ttgtctcgat ttcactatga gatccattac      2760
     cgccccacgg cccagcacgc aaatgctgat gccttatcgc ggctgcctat gggtcctgac      2820
     cccgttttcg accgcgatga gttactctgt ttccacgtgg atgaggacga acgtcgtgcg      2880
     gttgatggtt ttccaattac gggggaccat gttgcttctg ccacagccga gacccagttc      2940
     tctgtaaggt gattaggttc attcaacgag ggtggcctga cagaccctct ggcaaggcat      3000
     ctgaccctct ccgtaactat tacgccttgc atctgcgact gtctgttcgt gacggtgtgg      3060
     ttctcctctc tacagacgga gcgtttccaa gggtggtggt tcctgcttct ctgcgtcaac      3120
     gtgttcttca gttgttacac cagggacatt ggggcgtttc ccgcactaaa aatctggctc      3180
     gcagacatgt ttactggcca ggaattgatg cagacatttc gcgcatggtc gccctgtgta      3240
     ccaaatgtgc tcaacagtcg gcagcccccc gagctgaccc ttccccgtgg cctgccccag      3300
     tgcgcccgtg ggaacgggtc cacgccgatt ttgccggccc ttttcttggt gcctactggt      3360
     ttctcgtcat tgatgcttat tccaattttc cttttgtggt tcgctgtgcg tccccttcca      3420
     ctgcggcaac cacaaatgca ttggcaaaga ttttcgccct tgaaggtcta ccctctacac      3480
     ttgtcacaga caatggtcct cagttttcct cacaggcttt tgcagatttc tgttccggcc      3540
     tcggtgtccg tcatgtcaca gcgccgccct tccatccaca gtcgaatggg gaggtcgagc      3600
     gtcttgtacg cacattcaag tgtcagatga agaagttcct cactgagttt tctacggaag      3660
     atgctttact tcactttcta agttcttatc gatttacgcc catgggtgat cacagcccgg      3720
     ccgagctctt acatggtcag ccgcgcacat tgttacatct tcttcgctcc cgacagtctc      3780
     aggctgtttc tcaacctcct gacaagttcc gggtaggtgc ccctgtctgg gtacgggggt      3840
     atggctctcg tgccaagtgg atcaaaggaa ccatcaaaaa gtttagaggc cgtcggttgt      3900
     gtgacatccg tactgatgaa ggaatggttg ttcgccattt tgaccagata cgtccgcggg      3960
     cagtggacct gccattgtcg acgttgtctc cacacaggac tattcatact ccttcagaag      4020
     ccaatagaca ccatctatgg gtcccacctt tactgctcac aactccgagc acccaacata      4080
     tcctgcagaa gatgtgcttc catcacatga gctgactgtg cggggaggtg tgccagcatc      4140
     acagtcgcat gcaccagagg catcgcagct gtcacccgtc attcagtccc ggggacgtat      4200
     gcctccagca gagagcatgc cgacttctcc gccacctgca gccaatactt cagagatgtc      4260
     acccatcatt cagtcacggg tccgtgttcc gtgcaaaggg ccccgtccgg ggcactttcg      4320
     cccatacgtt cgcgtggcac cacgtgacct ggccgcaaca catcaagagc cgatggatgt      4380
     ctccgcactg tacaacacct ctgcaatgtg aagtgaattt cccaaagggg gaaaag          4436
//
ID   Gypsy-12_LMi-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-205
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3382-3382 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 205 BP; 54 A; 46 C; 53 G; 52 T; 0 other;
     tgttgtgaca gtgcatcgta aattcaaatc taccgccgcg cgtaatgcgc gcaaagtaat        60
     ataggggcgc tacagcaatt agacagcgcc gcctaagtga accggggctc gcctggactc       120
     agcggggcac ggcagtctgc agtgaaccat gattaataca ctgctgtata gagtttgttt       180
     ttcttgtgtt aataaagtta ctaca                                             205
//
ID   Gypsy-12_MeUr-I repbase;    DNA;    INV; 4740 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4740
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3046-3046 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..4183
FT                 /product="Gypsy-12_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKVGKAEEEQGDSMFPIADAKEPNVECGQRCVAGRG
FT                 MFQYAEELISKFSGNDETYTALKFVQEIEDNAEIFGWSELQRLIVARRSLI
FT                 GTAALWLRSEKPFKTWVNLKTAILKEFPDTLDSKTAHEMMSARKKSPGESC
FT                 IDYMLVMKEMGKRGKLPDYVAIKYIVDGIRDSEMNKMILYGVTTYADLKEK
FT                 LKIYETVKLKMKPEGSRPKVLRCYNCGEWEHKSAECPKRNSSLKYFKGNQF
FT                 GEKNDHRHQHGAGGAQNSRRYQFGQDRPNFGNFRRHQGRSTNSERDERQEY
FT                 QPQVERPKLSMFGSSSFDRQVGSNKDGAMTSRPIAADMSTSNVTECINAGV
FT                 NNVEVQKISNSKPLVEIKLNGYKVNALVDTGSDINLLDESLYREYLKDFGR
FT                 HSEYLVLTGLGNQSIESIGKCVVPTHIDDKCFDVTFHMVPQGTMPYRVILG
FT                 QELLSNYTVVFSERSIHLINKEEDXFRDLDCVANCNVVLGDTCSPSVRREV
FT                 LRCIEEYQPXQTKEAPLELKIILKDDIPVAHRPRRMSLKEREIVEHQVNEW
FT                 LDKKIIRVSYSEYASPIVLVKKKDGSTRICIDYRDINKKMVKDEYPLPIIE
FT                 DLIDKLTNAKFFSVLDLENGFFHLNVSEESIKYTAFVSHHGQWEFLKAPFG
FT                 LSVCPKYFTRFVSIIFRELVAHNIMATFIDDIVVYAEDEVQALENLKCVLK
FT                 VASDYGLRINWKKANLIARRVEYLGHTVEDGTVRPSADKTDAVMRYPQPKT
FT                 FKQLHSFIGLTSYFRKYIPNYALLAKPLTDLMKKGTRFTFNDIQRHAFHVL
FT                 KQKLASGPVLSLFNSRLDTELHTDASSVAYAAILLQRSSTGELHPVHYMSK
FT                 RTTESESKYSSYELEALAVVQGVKKFHHYLFGIKFKIVTDCQAFKMTLKKR
FT                 DLTPKVARWVLLLDQYDYVIEHRSGSQMRHTDALSRNCYDTVMVINLHDQI
FT                 QHAQDGDEGLKAIKEILQERAYGDYIMERGLLYKGMXKKLVIPKSMETEII
FT                 RRTHERGHFSKKKMMELVGKDYFIKNLNSKIDEFLVTCIPCLLATRKEGKQ
FT                 EGFLNSIDKHDIPLHTLHCDHIGPLSQTKKQYNYILTIVDGFSKFVWIFPT
FT                 KGTTSKETLSKLLIHQQTFGNPARIITDRGTSFTSSDFKEYCERENIEHIT
FT                 ITTGVPRGNGQVERIHRTIISILTKLCITDQSLWYKHVSRLQQALNSTFQR
FT                 SINTTPFQLMMGVKMKTKEDIEIYNLLQQESIDCFVQERDELRHSAKEQIA
FT                 KIQKENARSYNRKRKKSNKYQEGDRVLIKRTQFGAGLKLKEKFLGPYIVIK
FT                 VKRNDRYDLEKLDSSREGRTKTSSSADNMKPWPEFHDSILGE"
XX
SQ   Sequence 4740 BP; 1589 A; 731 C; 1090 G; 1327 T; 3 other;
     atttgggggc tcgtccggga tcaaagaaaa agaagaaacg agacgaaaat taaagtctgc        60
     ggcgaacgtt tgcacgtggt gtgccggtta gcgtggcgtt gaaaaaaatt gtacgtgaag       120
     aatgccgaag gtaggcaagg cggaagagga acaaggggac tcgatgtttc cgattgccga       180
     tgctaaagaa cctaacgtgg agtgcgggca gcggtgtgta gcaggaagag gcatgtttca       240
     gtatgctgaa gagttgatat ctaagttcag cggcaatgat gaaacgtata cagctctcaa       300
     atttgtgcag gagattgaag ataacgcaga gattttcggt tggtctgaat tacagcgact       360
     tatagtggct agacggtcgc ttataggcac agcggcctta tggctaaggt cggagaagcc       420
     atttaaaacg tgggtgaact tgaaaacggc catacttaag gagtttccgg acaccctcga       480
     cagtaaaacc gctcatgaga tgatgagtgc acgtaaaaaa tcaccgggag aaagctgcat       540
     cgactacatg ttagtaatga aggagatggg caaacgaggc aagttaccag attatgtcgc       600
     cattaagtat attgtagacg gaataaggga cagtgagatg aataaaatga tactatacgg       660
     cgtgaccaca tacgcagatt taaaagaaaa acttaaaatt tatgaaaccg tcaaattgaa       720
     aatgaaaccg gagggaagtc gacctaaagt gttgagatgt tacaattgcg gagaatggga       780
     acataagtcg gcagagtgtc ctaaaagaaa cagcagtttg aaatatttca agggtaacca       840
     atttggtgag aaaaatgatc atcggcatca acatggcgcc ggcggcgcgc aaaattctag       900
     aagatatcaa ttcggacaag atcggcctaa cttcggaaat tttcgtcggc accaaggaag       960
     atcgaccaat agtgagcgtg acgaacggca ggagtaccaa ccgcaagtcg aacgaccgaa      1020
     attgtctatg ttcggatcga gcagcttcga tcgtcaggtt ggcagcaaca aagatggcgc      1080
     gatgacaagc cgaccaatag cggccgatat gtcaacatca aacgtcaccg agtgtatcaa      1140
     cgcaggtgta aacaatgttg aagtgcaaaa gatttcgaat tcgaaaccat tagttgagat      1200
     taaattgaac ggatataaag tgaacgcgct tgtcgatacg ggcagtgata taaatttatt      1260
     agatgaatcc ttgtaccgcg aatatcttaa agactttggc cgtcatagtg aatatttggt      1320
     gttaacggga ctcgggaatc agtcgatcga atcaatagga aagtgtgtag tgcctactca      1380
     tatagacgat aaatgttttg atgtcacttt tcacatggtg cctcaaggta caatgcctta      1440
     tcgtgtcata ttggggcaag agcttttgtc aaattacact gtagtattta gtgaaaggtc      1500
     tatacatttg ataaataaag aggaggattk gtttagggat ttagattgtg tggcaaattg      1560
     taatgttgtt ctaggtgaca cttgtagccc ttcagttcga cgagaggttt tgcgatgcat      1620
     agaagagtac caaccgatsc aaaccaaaga ggctccattg gaattgaaga tcatattgaa      1680
     agatgacata cctgtggcac atcgtccacg gcggatgtct cttaaggaac gtgaaattgt      1740
     tgagcatcag gtaaatgagt ggctggacaa gaaaattatt cgggtaagtt actcagagta      1800
     tgctagccca atagtgttgg ttaagaaaaa ggatggatct acaaggattt gcattgatta      1860
     tagagatata aacaaaaaga tggtaaaaga tgaatatcct ctgccaataa tagaagattt      1920
     gattgataag ttaactaatg ctaaattttt tagtgttcta gatttagaaa atggtttctt      1980
     ccatctgaat gttagtgagg agtctattaa atatactgcc tttgttagcc atcatggcca      2040
     atgggaattc ctgaaagccc cttttggact ctcagtttgt ccaaaatact ttactaggtt      2100
     cgtaagtata atatttagag aattagtagc gcacaacatt atggcaacat ttattgatga      2160
     tattgtagtg tatgctgagg atgaagtgca agcattagag aatttaaaat gtgtactaaa      2220
     agtcgcctct gactatggtt taaggattaa ttggaagaag gcaaacctga tcgcacgcag      2280
     agtggagtac ctaggacata cagttgaaga tgggacagta cggccatcag cagacaagac      2340
     tgatgctgtg atgaggtatc ctcagccaaa gacgttcaaa cagctacaca gcttcattgg      2400
     attgacatct tattttcgca agtatattcc taattatgct ttgttagcga agccattaac      2460
     agacctcatg aaaaagggca ccagatttac atttaatgac attcaaagac atgcttttca      2520
     tgtgttaaag caaaagttgg ctagcggtcc agttctgtct ttgttcaatt cgaggcttga      2580
     tactgaattg catacagatg cttctagtgt agcctatgct gcgatacttc tgcaaagatc      2640
     gtcaacaggc gagttacatc cagtgcatta catgagtaag agaactacag aatctgaaag      2700
     taagtacagc agttatgagc ttgaggcttt agcagtggtc caaggtgtca aaaagtttca      2760
     tcattattta tttggtatta aatttaagat tgtgacagat tgtcaagcct ttaaaatgac      2820
     tctcaagaag cgagatctaa cacctaaagt agccaggtgg gtgcttttgc ttgaccaata      2880
     tgactatgtt attgagcata ggtctggcag tcagatgaga cacactgatg cattgagtag      2940
     gaattgttat gatacagtaa tggtaataaa cttacatgat caaattcaac atgcacagga      3000
     tggtgatgaa ggattgaaag ctataaaaga gatactgcag gagcgagctt atggggatta      3060
     catcatggag agaggattac tctacaaagg tatggasaag aaattagtta tacccaaaag      3120
     tatggagact gaaattataa gaagaactca tgaacgtgga catttttcta agaaaaagat      3180
     gatggaactt gtaggtaaag actactttat taaaaattta aatagcaaaa ttgatgagtt      3240
     tcttgtaact tgtataccat gtcttttggc tacaagaaaa gaaggtaagc aggaaggatt      3300
     cctgaattct attgataaac atgatattcc attgcataca ctgcattgtg accatattgg      3360
     accattatca caaacaaaaa aacaatataa ttacattctt actattgtgg atggattttc      3420
     aaaatttgtg tggatatttc ccactaaggg aacaacatca aaggaaactt taagcaaact      3480
     tttaatccat cagcagacat ttggcaaccc tgccagaatt atcactgata gaggtacatc      3540
     atttaccagt tccgacttca aagagtactg tgagagagaa aatattgaac atataaccat      3600
     cacaacggga gtaccacgtg gtaatggcca ggtggaaagg attcatagaa ctataatttc      3660
     tattctaacc aaactttgta ttacagatca gtctctctgg tataagcatg taagtcgact      3720
     ccagcaagct ttaaatagca cttttcagag gagcataaat actacaccat ttcagttaat      3780
     gatgggtgtt aagatgaaaa ctaaagaaga tattgaaatt tataatttat tgcagcaaga      3840
     gagtatagac tgttttgttc aagagagaga tgaattacga cattcagcta aggagcagat      3900
     cgcgaaaatt caaaaggaaa atgctaggtc atacaataga aagagaaaaa aaagcaataa      3960
     ataccaggaa ggagatagag ttctcatcaa aagaacccaa tttggagctg gtctcaaact      4020
     gaaggaaaaa ttcttgggac catatattgt cattaaggtc aagaggaatg atcgttatga      4080
     tctggagaag cttgacagct ctagagaggg gcgtaccaag acatctagtt ctgcagataa      4140
     tatgaaacca tggcctgagt ttcatgatag tattttaggt gaataatttt gctttaaatt      4200
     gctttgatga tttattttct tataagtata atattctatg tatacagacc tttctctata      4260
     taaactgcat tgtaaattgt caaaataaat gtaaaatcta atgtaaaatg ttagtaatca      4320
     cttaatcaga caatatgtta acttaacatt cataggatag taatgtaatc aatgttagtt      4380
     cagtaccatg gtaacttaaa ttcatcaata atgaagggat ttgtaagagg taacttgagc      4440
     atatagcata atgctttttg tatcatacct gttctggtga ttttgtgtaa gatgatgtag      4500
     taatgtctaa gctaactact tttaagtaaa agtttgtagt taagtttttt ttgttgaaac      4560
     ctattgtaaa attgtcagta tattgtgtga gtgtgaggat gtttggttta tttaaaaatt      4620
     gtattgtgta atattgtaat gttgtgtaag atgggtgtga ttgtttttgt gtgaattggt      4680
     atgccaggga aagggaatag ggctcggctg gggtcagcca gacctgcagg atggccgaga      4740
//
ID   Gypsy-12_MeUr-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-254
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3027-3027 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 254 BP; 103 A; 30 C; 69 G; 52 T; 0 other;
     tgtaggattg agaataagta agcaagcgat ggaagaatgg aacgttgaca ggatatccgg        60
     atgaataaat gagtatgatc atatagaaag agatggatgt atgcgaatga aagggataga       120
     agaaaagaat acaagatggc caatttggtc tgagcaagcg cggagagcga aaggtgatag       180
     atagtaagtt tgtggaaaaa taaaacgaag atagaaaaaa acgaattttt atttctgcca       240
     cgccccacgc caca                                                         254
//
ID   Gypsy-12_MoPha-I repbase;    DNA;    INV; 8516 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-8516
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1092-1092 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2183..3424
FT                 /product="Gypsy-12_MoPha-I_1p"
FT                 /note="gag."
FT                 /translation="MNRRGGDDSWVFTADREQLIAELERRRLSTDGSDSVL
FT                 ALRLLRQGQAAFTCESAEGAESRKMSDSDHLALPEGEGDRPDSPYEVARGP
FT                 IGHVHARPSRESGGHYPREWGGGSMGNAYNIMRKWNLKFSGTRGEDAETFL
FT                 IRIEEGREFIPLDDADILRCLPFFLSGIALHWFRGKKARLTTWAAFKAAWR
FT                 VRFGDPDFQFALRDEIMHRTQGERESVVDYLTCLGTMFDRLTPPWGEAEKI
FT                 GYAHRHMLPRLQAMVPREAVTDLDALELLAARAESCHRAAQSYRAPPPPER
FT                 SLFPDLAYRPPREGNRHGRTTDTIAALGVSTPGGGSGMAKNKKEKRPAAGG
FT                 DASAQATPAAPSTSTATPGPSGARALTGKCWNCEGTGHYARDCKEAPRMHC
FT                 YRCGRAGVTTRTCPTCSGNA"
FT   CDS           3343..6717
FT                 /product="Gypsy-12_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GGPADALLSVREGRGHDAHLSHVFGKRVGGSRPGGGP
FT                 TPAPIGPEGAVATIQTDYVCNSFGLRDSYLSFLNVEISGHSVRALLDSGSS
FT                 RTILGAETIDLVKRLGFRFGPAADRRVTTATGQTTRVRGEVEIPFELGNRK
FT                 RTVRAYALPTVGLSCILGMDFLSAFGIVVNFSAKTWAFGDDPTRQFSLETE
FT                 TTRSLSAALTGGATGGQRTDGENDSRETRGEGAVQREEANASLTPDTSQGG
FT                 LSELSAAENRELAEFLRTEVIGDPKRPGTTTLTEHRIDVGGHAPIKQRYYP
FT                 VSPKIQQAIYEEVDKMLEAGIIEPSNSEWSTPIVMIKKPNGTYRFCLDFRK
FT                 LNDVSKKDAYPLPYMNSILDKLRAARYISTIDLSQAYFQIPLEKNSKEYTA
FT                 FTVPGKGLFQFTRMPYGLTGAPATFQRLLDRLIGPEMEPHAFAYLDDIVIV
FT                 TRTFKEHLHWLGRVFNRIGEAGLTINPDKSKFCRSQVKYLGFLVQHEGLTV
FT                 DPEKTVAILEYPPPRNIRQLRRFIGMASWYRRFIPQCAARLEPLTSLLRKN
FT                 RSWEWGDTQKQAFEVIKSCLVNSPTLSCPDFEKPFVVQTDASSVGLGAVLS
FT                 QEIGGAEHVIAYASRSLSDAEKKYSTTEQECLAVVWAIRKFRPYLEGYRFT
FT                 VVTDHNSLRWLHNLRNPTGRLARWALELLEYDYVIEYRKGAMHHVPDALSR
FT                 MYEGGEELCAVIATDDQWYVGRAEEITRNPRRYPDWKLEGDELYVRKTRGI
FT                 ARVVGDRDQWKRVVPRETRREVIRENHDPPHAGHLGVDKTYQRIALRYHWP
FT                 RMYRDVAEYVRRCDTCQRTKVEQDAPAGLMGQRVIESPWTVVAADIMGPLP
FT                 TSKAGHSYLLVLQDLFTKWVECCPLRKATGKRIREAIEELVIYRWGTPRVL
FT                 LTDNGTEFVNRDIQALTQRCGIHHATVPPYHPQANPVERVNRVLKTMITAF
FT                 VDRDHREWDVHVHEFRFAYNSAHHTSLQATPAFLNLGREPPPVGLYRDEAA
FT                 VEVERTEPAEWRERMERLEALQEWVVENLEAAQEKQAKYYNRRHRDRQFEV
FT                 GEQVLKRHHVLSSGARHFSAKLARKFHGPFVIRRILSPVVYELADLTGGSI
FT                 GKVHIKDLKPYQEPLDV"
XX
SQ   Sequence 8516 BP; 1856 A; 1965 C; 2678 G; 2002 T; 15 other;
     aaaatttggc gcccaacgtg gggccctcaa gttgaggggg gcaaagcggt tatcgcgcac        60
     tatcgggtcg agcggctggc gcggggaaaa ggaggggggc tccgagttac attttttttt       120
     ggtctcccct tttcccgctt acacaggcga acttttcttt tggtgatatt ttgcatatat       180
     tgtgtttgat attttgtgaa ttatattgaa ttgatattat tgaaagttta tgttgattgt       240
     cgggcttacg tcgggagacg agagaggaat aagtggcgag ggcaattccc taagaaaatt       300
     aaacgagcca ggagaggctc tgtagatttt tttttgtcgg tacgggcgaa gttttttttt       360
     tttgtgagct agaatacgag agtacagtgt aaatttcggg ccgcgcaaga atttgcgaga       420
     ggacgaaaac aacgattgga attccgaagc gcgctcgagt tcgtaccgtt cgctgtgttg       480
     ttgaatggct caaggaagat tttggtgatm ttgagatctt gttgacgagc gagtaagata       540
     gctatcgccg agcctattgt attaaagaaa gaaaacaaca gaaggaatgc cccgatatcg       600
     ctgtaaacac gaagtattgt tcgcacttat ttctcgtctc gcggcgtacg ctccaatgat       660
     attatgaata ttatttgcga ttgacatatg atgtgatatt tttttttgac tactgttatt       720
     tactatattg tgttttgata ttgatatttt attttattgt gtgatatatt gctatttctt       780
     gtgtttgtcg gctggtaccg agggaggagg agaaaataag tggcgaaaga gcgtgcaagt       840
     agagtagtga gaaacgtccg aaagttttcc atttctctct ctcatagtat tatcgagcct       900
     ttgaagggag caccggatac gagccgtggg acttctttcc acgacgaatt aaataccgaa       960
     gagggaastc gagtatcgga gggccaattg ccaacggcca aatgtaaaga gcgagcgata      1020
     acmatatcac gagtagatca cgtcgtgctc ctaattatta attttttttt tctgctagta      1080
     cggagttgct cgaacgtaaa tacttcccgg ccgaaaggcc gctagtaaaa ctttgggaag      1140
     agaggccgta acgttgagct tagagttaaa ttaccaagga cggagatgtt atgatttacg      1200
     aaaagagcgt tgttgcgagc acgcagagaa ttgaaaggaa atcgccataa atacgaaata      1260
     ttgttcgaac ttatttctcg tccctcggtg tgcgctgctg tatatgattt atttgagtta      1320
     ttgaattcga tgatttaatt gctgaatatt tgaattgtgt gccttactat ctttatgtga      1380
     cttatgccat ttcggtgaga gatttgactt atcaatttct tttttttctt tttcgtgatt      1440
     tatcgctttg cgagaccggt cggagtgctt tacgattaat taatgttttt ttttctcgtt      1500
     tctgtttttt tttctcatta cttatttttt tttctttcga tcgtgtgaag ccttactaat      1560
     ttcttttttc gtggcattcc accagcaatt cggtgttaac cggtaattga cggatcgatg      1620
     aattaatact cgattttgtg tgcaaacatt acctccgcgg gagcctagct ctagaggaat      1680
     tatttttttt tggtcgtcct gttattattg tcggtcgctc ctcgggagga gaggctgttt      1740
     tgctactaat ctttcagagc ggggcatctg aaaatttttt ttctttttct ctcggaataa      1800
     ctttggatct ctatcgtgtg acgtagtgtt gtttcgcagg ccgatcaatt aatttcgtga      1860
     acggggcgaa tatttgcaca cgcgtaccta cacttttttt ttgtgctggt ggaaacatcg      1920
     tctttataac taatctttgc tattgacttc caatgttttt ggtattgtgc tctgtttcct      1980
     ttttgtgtat gagttagtgt aataattcga cgggatactt tcgtgcgaga gtcgcgttta      2040
     ccactggcga tttggtcctt ctcgcgcaat ccacgacgag tgtaccttcg cgttcgagac      2100
     cggtgtcggg ttgtgcggac accgggcatc gcggggcggc ccgaaataat agggacgcgg      2160
     gcagcgtccc cggggagacc gcatgaaccg gcgggggggg gacgactcgt gggtcttcac      2220
     cgccgaccgc gaacagctga tcgcggaatt agagcggcgc cggttatcta cagacggatc      2280
     ggactccgta ttagcgctcc gattactgcg ccagggacag gccgcgttta cgtgcgagtc      2340
     tgcggaaggg gccgagagcc gtaagatgtc ggactcggac catctagccc tacccgaggg      2400
     ggagggggac cgaccggata gcccatatga ggttgcgagg gggccgatcg gccacgttca      2460
     cgcgaggccg tcgagagaaa gcgggggtca ctacccccgg gagtgggggg gcggctccat      2520
     gggtaacgca tacaatatta tgcgaaaatg gaacttgaag ttttcgggaa cgcgcggaga      2580
     ggacgccgag acgttcttga tacggatcga ggagggccgc gagttcattc cgttggacga      2640
     tgcggatatt ttgcgttgtc tgccgttctt tttgtcgggg atcgcgctgc actggttccg      2700
     gggtaagaag gcgcgcttga cgacctgggc ggcgtttaag gccgcgtggc gggtgcgctt      2760
     tggagacccg gacttccaat tcgcgctacg ggacgagata atgcaccgta cccaggggga      2820
     gcgggagtcc gtcgtcgact atttgacgtg tttgggcaca atgtttgacc gtttaacgcc      2880
     gccgtggggc gaagcagaga agatcgggta cgcgcaccgc cacatgctac cgcgcctgca      2940
     agcgatggtg ccgcgggaag cggtgacgga tttagacgca ttagaattgc tggcggcgcg      3000
     cgcggagagc tgtcaccgcg ccgcgcaaag ttaccgggcc ccaccacccc cggagaggtc      3060
     attatttccg gatctcgcgt atcggccgcc gagagaaggg aaccgtcacg gacggacgac      3120
     ggatacgatt gccgcgttgg gagtgtcgac ccccgggggg gggagcggaa tggcgaaaaa      3180
     caagaaggaa aagagaccgg ccgcgggtgg cgatgcgagc gcgcaagcca cgccggccgc      3240
     cccgagtacg tctacggcga cgccaggccc gagcggggca cgggcactta ctggaaagtg      3300
     ctggaattgc gagggaacgg gacattacgc gcgcgattgt aaggaggccc cgcggatgca      3360
     ctgctatcgg tgcgggaggg ccggggtcac gacgcgcact tgtcccacgt gttcgggaaa      3420
     cgcgtagggg ggtcgcgacc cgggggcggt ccgactcctg cacctatcgg ccccgagggt      3480
     gcggttgcga cgattcagac cgactatgtc tgcaattcgt ttgggttgag ggactcctat      3540
     ctctcctttc ttaacgtcga gatatcgggc catagcgttc gcgcgctgtt ggattccgga      3600
     tcgagccgca caatactggg ggcggagacg attgatttag tgaaacgttt aggttttcgg      3660
     ttcggtccgg ccgcggatcg gcgagtgacc accgcgaccg gacaaacgac aagagtgagg      3720
     ggggaggtag agatcccgtt cgagctgggt aatcggaaac gaacggtgag ggcgtacgca      3780
     ctacctacgg tcggcttatc gtgcattctg ggcatggatt ttttgtcggc tttcgggata      3840
     gtcgtgaatt tttcggcgaa gacatgggct ttcggggacg acccgacgag gcagttctct      3900
     ctggagaccg agaccacccg gtcgttatcg gccgcgttaa cggggggggc gaccggcggt      3960
     cagcggacgg acggtgaaaa cgattctaga gagacgcggg gagaaggggc ggtacaacgc      4020
     gaggaggcga acgcgagtct aacgcccgac acctcacagg ggggattgag cgagctatcg      4080
     gccgcggaaa atcgcgaatt agctgaattt ctgagaacgg aggttatcgg tgaccctaag      4140
     agaccaggaa cgaccaccct aacggaacat cgtatcgacg tcggggggca cgcgccgata      4200
     aagcagcggt actaccccgt gtcgccgaaa atacaacagg ctatctacga ggaggtagat      4260
     aaaatgttgg aggccggcat tatagaaccc tcgaatagcg agtggtccac gccaatagta      4320
     atgataaaga agccgaacgg cacgtatcgg ttttgcctgg acttccggaa gttaaatgac      4380
     gtatcgaaaa aggacgcgta cccactgccg tacatgaact cgatattaga caagctgcga      4440
     gcggcgcgat acatatcgac gatagacttg agccaggcct acttccagat ccctctggaa      4500
     aagaatagta aggaatatac cgcctttaca gtcccaggga aggggctctt tcaatttaca      4560
     cgcatgccgt atgggctcac gggagccccc gcaacgtttc agagactttt agatagatta      4620
     atagggcccg agatggaacc gcacgcgttc gcttatcttg acgatatcgt tatcgtaaca      4680
     agaactttca aggaacacct ccactggctc gggcgcgtgt tcaatcgtat cggagaagcg      4740
     ggcctcacta ttaacccgga caagagcaag ttctgtcgct cgcaagttaa atatctcgga      4800
     tttttggtgc aacacgaagg gctaacggta gacccggaga agacggttgc tatactagag      4860
     taccccccgc cgcgtaacat tcgtcaattg cgtcgtttta tcggtatggc gtcgtggtat      4920
     cgacgtttta taccacagtg tgcggcccga ttggagccat tgacgagcct tttaaggaag      4980
     aaccgctctt gggagtgggg ggacactcaa aagcaagctt ttgaggtgat aaaatcgtgt      5040
     ctcgtgaatt ctcccacatt atcgtgtccg gactttgaga agccgtttgt agtgcagaca      5100
     gacgctagtt cggtgggctt aggcgcggta ctatcgcagg agatcggggg agccgaacac      5160
     gtcatcgcgt acgcgagtcg ctcgttatcg gacgcggaaa agaaatactc cacgacggaa      5220
     caggagtgtt tagcggttgt ttgggcaatt cggaaattta ggccctacct cgagggctat      5280
     cgtttcacgg tggtaacaga ccacaacagc ctgcggtggc tgcacaattt aagaaaccct      5340
     acgggccggc tagcgaggtg ggcgctggag ctcctggaat acgattacgt aatcgaatat      5400
     cggaaggggg ccatgcatca cgtacctgac gccctctcgc gaatgtacga agggggcgag      5460
     gaactctgcg ccgtgatcgc gacggacgac cagtggtacg tcgggcgggc ggaagaaata      5520
     acgagaaatc cgcggcggta tcctgactgg aaattggagg gcgacgagct atatgtgaga      5580
     aagacgcgcg gcatcgcgag ggttgtcggc gacagggacc aatggaaaag ggtagtacca      5640
     agggagacgc gacgggaggt gatccgcgag aaccacgatc ctcctcacgc cggacatttg      5700
     ggggtcgata agacgtacca gcgaattgcg ttgcggtatc actggccgcg catgtatcgg      5760
     gacgtggcgg agtacgtgcg tcggtgtgac acgtgtcaga gaacaaaggt ggagcaggac      5820
     gctccagccg gtttgatggg acaaagagtg atagagtcac cgtggacggt agtcgcggca      5880
     gatattatgg gtcctctccc aaccagtaaa gcgggacatt cgtatctact cgtccttcag      5940
     gatctcttca caaagtgggt ggagtgctgc ccacttcgaa aagctaccgg gaagagaatc      6000
     cgcgaagcga tagaagagtt ggtcatttat cggtggggta cgccgcgcgt gcttctaacc      6060
     gataacggga cggagttcgt taacagagac atacaggctt tgacgcagcg gtgcggtatt      6120
     caccacgcga cggttccgcc ctaccacccg caggccaacc cggtcgagcg cgtgaaccgc      6180
     gtattaaaga cgatgatcac cgcgttcgtg gatagggatc accgtgagtg ggacgtgcac      6240
     gtgcatgaat ttcgattcgc gtataattcg gcacaccata cgtctttaca ggcgacaccg      6300
     gcctttctga atttgggacg ggagccaccg ccggtgggac tgtatcggga cgaagcggcc      6360
     gtcgaggtcg agcgaaccga accggctgag tggcgagaac gtatggagcg cctcgaggca      6420
     ctgcaggagt gggtggttga gaacctcgag gcggcccaag agaaacaggc gaaatattat      6480
     aatcgccgac atcgcgaccg ccaatttgag gtgggcgaac aggtgctgaa gcggcaccac      6540
     gtattatcgt cgggagcgcg gcacttttcg gcaaagttgg cgcgaaagtt tcacggccct      6600
     ttcgtgataa gaaggattct gtcgccggtg gtctacgagc tcgccgattt gacgggggga      6660
     agtattggga aggtccatat caaggacctg aagccctacc aggaaccact ggatgtgtag      6720
     agtccctctc ggggttgact gttacgttgg ggcgcgaagg gaagaagaag aatgagcgcc      6780
     ctgcgccttg attttttttg tttgtgtttt gtattgtttt gtctggtgat ggtagctata      6840
     ttgttaacgt cgtcctacag gaatttatcg gggtccgcga agaccggacc gtggtggtgt      6900
     ctgacaagag gaagagtggg tccacgaacc gggggaamag ggggcccatg gataatttta      6960
     tggcccggtg ggcggccctg ttccggaggg tcgacgcgga gtacccgggg ttttgggtga      7020
     cttgacccag accckggagg acgagaggcg gcggagaagg acgacgcagg gggccgtcgt      7080
     gttggaggtg ccgctgtccc gcaccgtggc gacccagacc gagccgatgt cgggggcgac      7140
     ttgctccgtg gggacgcaag ccagccccgc mcaaaggacg gtcgggactc agacggacag      7200
     ggaggagacc gagaggaagg accagggaac gcagacctgg atgacggtgg mggatccgcg      7260
     cacgttcgcc cggacgggac tgggcgcgat cgcgcggctc ctggacagtc tcccgtggcc      7320
     tccggaggag cggccgaggg cagagaccga ggaccggggc ccgtccagcg ggagcccgcg      7380
     ggagggcccg gcacccgcgc aggggagaga agagccccga tatcccgttg gccaagggga      7440
     aaagaaagag gcagccgcga cgagggaacc tccscgcccc gcacmgggtg gagaagagcc      7500
     acgcaaggca gtggagaggg agcgctgctg gaactgcggg tccctctacc acttcaccaa      7560
     gcggtgcccc cgcccgcgca aggaggacca ttgttatcgg tgcgggcggc ggggtaccac      7620
     ggtgggtgcg tgcccggatt gccgggaggg gtacgaagcc caggggccgt acctcccggg      7680
     acgaggcggg agggcccgga gcccgaacgg cggagaggag gaccaccggg gagcctccga      7740
     gacccccccg agagtatcgg magaggacgc ggggggagca mgacggaggg acgacccgcg      7800
     gagggcggag mccctccgaa gaaataggac cccgccctgg tggggggccc cgtttttttt      7860
     tgtttttttt gtttgtttgt ttgtgttgtt tttctcttat cgtttttttt tgtgttgtcg      7920
     tgtttttctt cttttcgttt tatttaattt ttttttgttt tgttttatgg tatccatttt      7980
     ttgtttttgt tggcttttct ttctgttttc cctcmctctc attatttttt ttttcggtct      8040
     gggccagggg cctgatatcg gtgtcggact ggtaaagccc ctgtaggtcc ccagagggga      8100
     caccaaataa agaggatggg akackacaat aagcctatga cttttttttt tgcgagaccc      8160
     tcctgatttc cccgcgccct gacccgggcg gtcgtagcct gtcgtgcggc cgcgagaggg      8220
     gcgggaacgg ggtagcgccg cggcgcgccc cgggatcaaa ccgtgcgtgt ggggaatgtc      8280
     gacggaatcg cgagagttaa attgcggatt gtggttattt ttcttttgtt ttggttgttt      8340
     gattggcaac aggattcaag ttgccgcaag gcgaattaaa gttttttttt ggtgtttcgt      8400
     ccttggcgtg acctcgactg tcgggtgacc cgtggagatc tcggatgcgc tcgcgctggc      8460
     cggtggccgc agggcgggcc gccgagctgg tagggatcct cttggcgtgg gggagt          8516
//
ID   Gypsy-12_MoPha-LTR repbase;    DNA;    INV; 1742 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1742
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1176-1176 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1742 BP; 315 A; 475 C; 597 G; 355 T; 0 other;
     tgtgacgtgg tagctcagct gccacgagta gcagcgttcc tcccccgtca caggctgcga        60
     attcgcgccg tacggggaaa ataggcgaga ggcgagaggg gatctccatg gggaaccgcg       120
     acagacctag cgagcgtagc attaatttct tatatttttg atttctttgc gcggcggccg       180
     tcttccgatg gaatgcgacg agagagagag agagagagga ggagagagag cgacgacgat       240
     gcggggaagg aggaaggacg ccaccggtgc ccgggagaga tgagcacgcg gcccgcacgg       300
     ggattcggcg tggccctggg agggccacgg ccggagccta aagcggcggt gcccgccgac       360
     accacaacgg aacgtcccgg agggctgtgg aggagcccgg atgggaccaa acgcgtcgag       420
     ggaggcgtcg agtcctctca cgaggaacgg aggtctccgc gtgcgctgcc ccggctcggg       480
     aaatggccca gcgggagaaa gaatattttg cgggggcctg cgaggccccc ggaaggatta       540
     cggcgcgcac gtccctgcgt acgcaggact gcgtgctttg cagcaattgg gtcgcggcgc       600
     ggaaacaatg cgcatgactg gacggggggg tcgcggcgtc gatccgggat cgaccgcgat       660
     ccaccccgct tttgcgtgcg agcggcccta gccgtaaagt cgcgtgtcgt gtcccttagg       720
     ccaaattatc ggtgtggcta gtgcgaggcc tcaatcgcga gaaaagagga cgagcctgga       780
     gacgagggag gacgtcgcca ggacattatc ggtgaggtgg cctgtccaga taagttactg       840
     tgagcggttg ccggccggcg aggtgttccc gggcccgttc tgcatccgct tttgtgttgg       900
     tgcgtgactc gcgcggaccg cagggcggtc atacgttcgt gtcattaatt gggagatata       960
     tcggatgcaa gcgggcggga cgccgaagcg ccgagccacg gggaggacga tcgtgaagac      1020
     gcgtgggttc cgtcggagat tcccctcgac cgtgtgcgcc gcaaagccct cgcgcgagcg      1080
     agtatcgcgt cgcgagtagc gggtggacgg gacttccggt ttcgcgacgg tgtgtagtgc      1140
     ggtagcggcc ggcgattatt gtgtgacccc cgcgagacac gtggtcgcgt tctctagttg      1200
     ccgggagtgt cggcacgttc gaacgtccga aattcatgtg cgcggaagat tccatcgtct      1260
     gtccttgtcg gccgcgtgcc taccgcggga gcttcccgcg tatcgttcgc gtttctgttt      1320
     ggtttgcctc gcgccggggc gccgcattgt cggaacgccg catgccgcgt cccgcgatat      1380
     tattgtttcg cctgattatt aatttttaat aaagatcgtt atctgttaaa ttccgagcct      1440
     aattttttgg tgtgtcgtcc gccacttcgt gttaccgcat tcgcctgctc ccttacgatt      1500
     caccccgccc ctctaccgtt aggcagagct ggtcgagatt gtcgcgcgag gatcgaggac      1560
     accttggcgt aacgattttc gcgaattgac gcgtcgtcga gcgcgtctgg cgcccaacaa      1620
     tttttcgtga taacgcgtgg ccgagattcg agcgcgacaa acacggcatc gggggtaccg      1680
     gttaccctat cggtctcgct gctttttgct cgcggctttc ccggtcagga aaagtcgtga      1740
     ca                                                                     1742
//
ID   Gypsy-12_MSe-I repbase;    DNA;    INV; 4398 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4398
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 889-889 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4398 BP; 1844 A; 579 C; 732 G; 1243 T; 0 other;
     aaacgacaac tctagttaat atcaatagaa atggagaaat tacgatttaa atttgaggta        60
     atgggatcat cagatggaaa gtcaaatata atttgtataa cctcaatcga aacaccggac       120
     gaacgtattt tcgaaatccc agacgaccta aaacctgcaa gtaagcatac cagcatagta       180
     tcttcagacg tttatacgaa aattagaaat tctctaaaaa agacaccaaa cacgttctat       240
     atggatacct ctaaatacag atttgaggaa aatatatcta gacggatgtg aaaatttaca       300
     gtttggcgat caatatttag atgaaataac taaagaacta ttatctccac acaagaatac       360
     taccagcaat gtatcagaga aaaaaaacct ttgtaaaaac cgctgaaaga tttttgatgg       420
     aaaaattttc gaacaaatca tcaagtgcta accaatggat tagtgaattt gagagggaat       480
     gtgaaagatt cgaaattaca caagatcaag agaaaattga gattttaaaa tatcggttag       540
     aaaaacagtg cttggattgg tacaacagca tgttaataaa actaacagtg aaatcggaat       600
     ggccagtgtg gaaggacaac ttttgtgaga cgtatgaaaa taaaggttgg tcgcaagtga       660
     aatatgcgtt tacatttaag tttcaagcgg ggtcattact cgaatatgcc acaaaaaagg       720
     aaagattatt gttagagatt aacagacaaa ttgacacaca aacattgata aatctcattg       780
     taatgggact accagattat ataataaata aaattgataa agaaacagtg caatcaacgg       840
     caagcctcta taaggaaatt ggaaaatatg aacacatggc taacaaaaag aatttcatca       900
     aatataagat aaataccttt gaacctaaag gaaacactga caaaataaaa ccatgtaaaa       960
     cttgtgaaaa attaaataaa ggtatcaggt ttcatcctga agaaaggtgc tggtttaaac      1020
     agacagatga ttatagtcgg aaggggaata ataaggctgt aaataattct gtaatagatg      1080
     ttgaacttat taataatgag acaaaaaacg tataataaca ccattaatta aagtcaaact      1140
     attgttagac ggaaaattag aaatttttgg aatttatgat tcaggctcga atgtttctat      1200
     aattaattca aaattagtaa gactacgaga ggaaaataaa aattctttga gtagtgataa      1260
     cttaatcaca attaatggtg ttaaaaaaaa cgaatggtgt ggcaaatatt aaaataaaaa      1320
     tttttgatat ggaagaaaat acagatgttt atattataga tggagaagaa tttaaaaatg      1380
     attttttgat tggactggat atcataaaac aatttaaact agttcaagac gaaaacttga      1440
     aaatatatca aaaagagaag aaaaaaataa tgatgaaaga aaagaattta tgtttgagga      1500
     tgacaaagat attacttctg agggattgaa taatgaacca aatccatgtt cagtgaattt      1560
     taatgaacat atacaagagg agaatttcaa gatgaatatg agaaatctaa ctactgaaca      1620
     gaattcagaa atttgtaaac tagtcgatac ttacaaaacg atttttgcaa aagataaata      1680
     tgacatcggc acggtcagag aatatgaagc acgaattgac ctacttgtgg acaaatattg      1740
     tagtaaaaga ccttatagat gttccattga ggacaaaata gagatagaac aacaagtagc      1800
     aaaattacta gataaaaatc tcatagagga atcatacagc ccatttgcag caccggtaac      1860
     attggtcttc aaaaagaaga cggaaaaaag tcgagattat gtatagattt tagagaactc      1920
     aataaaatag tgatacctca agcacagcca ttcccattga tcgatgactt agtaatcaaa      1980
     acaagaaact cgacatattt tacaacacta gacgtcaatt cggcattctg gtcaatccca      2040
     ctaagaattg aagacagaaa caaaactgct tttgttacgc aagagggaca ttatcaatgg      2100
     acatgtttac cttttggttt gaaaacatcg ccggctattt ttcaaagaat attaggtaac      2160
     attttgagaa agtataagct tacagatttt gcagttaact acatagacga tatccttata      2220
     ttctctaaaa actttcctga acacataaat catttaacac aattgtttga agctataaag      2280
     aatgaaggtt ttagactaaa gtttacgaaa tgtacatttg cttcggattc agtaaaatat      2340
     ctcggccaca taatacaaaa aaataaagta caaccaatac gagataattt aatttcaata      2400
     aaagattttc caattccgaa aactcaaaaa aatatcagac aatttttagg aaaaattaat      2460
     ttttatcatg aatatatacc gaaaagtgcg ataattttag aaccacttca caatttattg      2520
     agaaaaaatc aaaaatttaa ttggtctgcg gattgtcaaa aatcttttga agagataaaa      2580
     aaaatgttat gctcgcagcc ggtattagaa atctttgata aggatttacc aataattatt      2640
     tatacagacg catctttgca aggtattggg gctgtattaa agcaaacaca gccagatgga      2700
     acacaaaacc agtagcatat ttctcaaaaa aattaaatca agtccaaaag aggaaaaaag      2760
     caatttactt agaatgttta gcgattaaag aagcaataag atactggcaa tactggttaa      2820
     taggtagatc atttatggta tataccgacc ataaaccttt ggaaaacttg aatatcaggt      2880
     ctaggacaga cgatgagcta ggcgacttaa catattattt atcacagtat gattttaaaa      2940
     taaagtatgc gccaggaaaa gacaatacag aggcagattg cttaagtagg aatccagtct      3000
     tagatgcaaa tgaggataca gaagagcaat taaaaattgt gaaccaaatt aaattgcaag      3060
     atattgttac agatcaacaa ttaaatgagg atgtacaaaa ataaaatcta aattaatatt      3120
     aaaacaaaat atttactata gaaaagttag aaaacgtgaa aaaattatat tatcggaaga      3180
     attttgtaaa aaacttatta aagatgtaca taaaaatatg tgtcatatag gtgtaaaaca      3240
     gatgctaaat atgattagtc cattatatac ggctaaaaat tttaccaaaa acataaaaac      3300
     cattgtaaaa cttgtgagac atgcataaaa aataaaacaa gaggtcaaga taagtatggt      3360
     ttaatgtcac atctaggtcc tgcaacaaaa cctttggaaa tagtatcgat agatacaatt      3420
     ggaggttttg gaggctcacg atcaaccaaa agatttttac atcttctagt ggaccactat      3480
     acacgatatg cttatattgt tacttcaaaa acacagactg ctaatgattt tgtcaaattg      3540
     attaataatg taacagattc ggattcaatt gggatgattc tcacagatca atatccagga      3600
     ctcaactcaa aagaattcaa agaatttcta aatggaaaat caatacctct aatctttact      3660
     gcagttaatg ctccattttc gaacggttta aatgagagac tgaatcaaac attagttaac      3720
     aaaatcagat gtaaaataaa tgaaaacagt aataaaacgg catggacgtc gatcgctcat      3780
     agttgcatag ataaatataa taatacagaa cacacagtta ctggttttgc acctaagtat      3840
     ttgttagatg gcacagatgt ttctattttg ccaaatgaac taaaacagga taaaaaaaca      3900
     caagcagaat ggatcagaga taagaaaata gcatttgaaa attcaataaa gtcacataat      3960
     tacaataaac taatatttga taaaaataga actcaatata acttcaaagt aggtgatatg      4020
     gtatatgtag agaatggtaa caagttaaat agaaataaat tagacgagtt gagaattggt      4080
     ccatttgaaa ttgttgaaaa gatatcaaat tcaatatata gaattaatac aggtcataaa      4140
     aagtcagagt ccaatctctt tcatgtcaca aaactcatac caatatgtac ataaaaacac      4200
     acagataata tgtgtaattt aagtttttat tttatgttat tttcttgtat aataaggaga      4260
     aaaatacaga gaagagaatt tttttttgat aatatgtata atttaagttt tttattttat      4320
     gttattttct tgtataataa ggagaaaaat acagagaagg gatttttttt gaaaaaaaat      4380
     ctttgttggg aggggaga                                                    4398
//
ID   Gypsy-12_MSe-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-353
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 938-938 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 353 BP; 125 A; 39 C; 56 G; 133 T; 0 other;
     tgtaaaggat atacattcta gtctgtgaat cctttaagtt ttaaataggt tatagcggcc        60
     tacatggttg gtaaaatggc ttgttgacag ttgacacaaa gtaaatcagc aaatagagag       120
     aaaatataat tttataaaat attttaaaaa ggaaccgaca aactgaaatt attaacttta       180
     attgtcgttt ctttgatttc aggtaagaat atgccatttt ggttatatac tgttattatt       240
     gtgatgtatg tacttaatta cttaataaaa tatctttgat ttcagagcaa cgcaagttta       300
     tttaatttat agtttgaagt tccaaataaa catacgtagt actttgtctt ata              353
//
ID   Gypsy-12_OrIn-I repbase;    DNA;    INV; 4056 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4056
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1553-1553 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..812
FT                 /product="Gypsy-12_OrIn-I_1p"
FT                 /translation="MTDESNEELPNATGGHFVERVSVKIPPFWCEKPEIWF
FT                 YQVEAQFSINRITSEETKFNYLVAQLEPKYIENIWDIIQSNNATKYSAAKE
FT                 RLLGIFKESEEKKIKKLVTDLEIGADKPSQFLRRMKNYAGAEITDKALKTL
FT                 WMNKLPDSIRSILIISNEELDKLAEMADKIHEMTPNRADIYAVTQKDSPDL
FT                 EKEVEELKKKVESLQFRGRSRERQRDRSRDRSRSYDSKGKFCFYHFRFGKK
FT                 ANKCQPPCQWKNPENSAQQPK"
FT   CDS           758..3934
FT                 /product="Gypsy-12_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VPAAMPMEESGKLCPATEVATASVVEGRRCRLFVVDR
FT                 KSGLRFLVDSGAEVSIIPPQNNSILDNSYKLYAANDSEIPTYGSKILTLDL
FT                 GLRRQFTWPFIVAKVRQGILGADFLDKFNLLLDLNQRRLIDGMTNLNIKGK
FT                 LNAITPEDIVSAVSNKIQFHNLLASHPKITTPRLTPFSVKHDTVHNIVTKG
FT                 GPVYSRARQLDPARLSIAKKEFQFMLDSGIIRPSKSAWASPLHIVAKKDGN
FT                 ARPCGDYRRLNDLTVPDRYPIPRIEDFHHVLKDKTIFSKIDLFKAYYQIPI
FT                 AEEDKPKTAIITPFGLYEFNVMSFGLRNAPSTFQRFINEVFHGLNFLFPYL
FT                 DDILVASASVEEHEIHLKQVFKRLDEYGLRINLSKSVLGVEELDFLGYHIS
FT                 KRGSQPLLSKIEAVLNFQLPETVQDLRTFLGIVNFYRKYLKHAAHVQAPLH
FT                 EYLKGAKKKDKRKIDWNDTTKACFEKCKQDLASTTMLVHPDPQLPLRLCTD
FT                 ASDVAIGAVLEQYDDNGWKPLAFFSKKLSDAQKSYSTYDRELLGIYLSIKN
FT                 FKHYLEGRDFSIFTDHKPLIFAFKQKNDKASPRQLRHLQYISQFTTNIVHI
FT                 PGHDNIIADKLSRIDEVHSLDYDVIADAQVSDAELESLLHNNTSSLEFKKH
FT                 ELPSGKQLWCDISTNKIRPFIPKNYRMDTFHLVHDLSHPGVKTTIKLVTSR
FT                 FIWPNAKVDVRKWAQSCVACQRNKINRHTKSEIGIYQEPDERFEILHMDIV
FT                 GPLPPSDGFSYCVTIIDRFTCWMEVIPVRTITAEAVARAFYDHWITRFGVP
FT                 ARVITDQGRQFESDLFRSLAALFGIKVQHTTAYHPQCNGKIERLHRTLKAA
FT                 IRAHNSVDWTSNLPTILLGLRSTLRNDSQHSVAQMVFGKPIRLPGEFFQES
FT                 RIKIDTDAFVARLMRQMDSLRPLPTRHNSNRHVFVHADLESTSHVFVRIDR
FT                 VKKPLEPPYEGPYRVLKREQKYFTLRIKGKDVAISIDRLKPAYMLSEDVPI
FT                 ASDPLASDPLPSDCATPDPDDNTVSHLPKTSRKGRQIRLPVRFSDDISIKT
FT                 FN"
XX
SQ   Sequence 4056 BP; 1266 A; 889 C; 795 G; 1106 T; 0 other;
     attggtgacc ccgacgtgat cacacgatga cggacgaaag taacgaagaa cttccaaatg        60
     cgacgggagg acacttcgtg gagcgagtaa gtgtaaaaat tcctcctttc tggtgtgaga       120
     aaccagagat atggttctat caagtggagg cccagttctc cattaatcgc ataactagcg       180
     aggaaacaaa atttaattac ctcgtcgctc agttagagcc caaatatatc gaaaatattt       240
     gggatattat tcaatcaaac aatgccacca aatactctgc cgccaaagag cgtttgcttg       300
     gcatttttaa agagagcgag gagaaaaaaa taaaaaagct ggtcactgac ctcgaaatag       360
     gagctgacaa gccaagccaa ttcttgcgaa gaatgaaaaa ttacgcggga gctgaaataa       420
     cggacaaagc attgaaaacg ctgtggatga acaaacttcc agattccatt agaagtattc       480
     taatcataag taatgaagaa ttagacaaac tcgcagagat ggctgacaaa attcacgaaa       540
     tgacccctaa ccgtgcagac atttatgctg taactcagaa agactctcca gaccttgaaa       600
     aggaagtcga ggagctaaaa aaaaaggtgg aatcgctgca attccgtggt cgatcgaggg       660
     aaagacaacg ggacagatcg agggatcgaa gcaggagtta cgactcgaaa ggtaaattct       720
     gtttttatca ttttcggttt ggtaaaaagg caaataagtg ccagccgcca tgccaatgga       780
     agaatccgga aaactctgcc cagcaaccga agtagcgaca gcttcggttg tggaaggacg       840
     cagatgtcgc ttattcgtcg tcgaccgaaa atccggcctg cgttttctcg tagatagtgg       900
     agctgaagtg tccattatac cgcctcaaaa taattcaatt cttgacaatt cttataaatt       960
     gtatgcagca aatgattcag aaatccctac ttatggcagc aaaatcttaa ctttagacct      1020
     tggacttcgg aggcagttta catggccatt catcgttgca aaagtcagac aaggaatcct      1080
     tggagctgat tttctcgaca aattcaatct gttactcgac ttaaatcaga ggaggttaat      1140
     cgatggcatg accaatctga acattaaagg aaaactcaac gctatcactc ctgaagatat      1200
     tgttagtgct gtaagtaata aaattcaatt tcataactta ttagcatcac accctaagat      1260
     aacaactcca agactaacac ctttttctgt caagcatgac actgttcaca atattgtgac      1320
     aaaaggaggt ccagtctata gcagggcaag acagctagat cctgcgagac tctcgatagc      1380
     aaagaaagaa tttcaattca tgttagatag tggcattata cgcccttcga aatctgcctg      1440
     ggctagtcca ctgcacatcg ttgctaaaaa agacgggaat gctagaccgt gtggcgatta      1500
     ccgacgttta aatgatttga ccgtacctga ccgatatccg atacctcgaa tagaagattt      1560
     tcatcatgtc cttaaggata aaacaatttt ctcaaagatt gatctcttca aggcatacta      1620
     tcagattcct attgctgagg aagacaaacc aaaaacggcg atcattactc catttggtct      1680
     ttacgaattc aacgtcatga gttttggcct gcgtaatgca ccatcaacgt ttcaacgttt      1740
     catcaatgag gtttttcacg gactcaattt cttgtttccc tacttggacg acattcttgt      1800
     tgcttctgct tcagtagaag agcatgaaat tcatttgaag caagttttca aacgcctcga      1860
     cgaatatggc ttaagaatta acttgtctaa atctgtttta ggtgtagaag agcttgattt      1920
     tttaggctat cacatctcta aacgaggatc acaaccactt cttagcaaga ttgaagctgt      1980
     tctcaacttc caacttccag aaactgttca agatctacgc acgtttctcg gtatcgttaa      2040
     tttctaccgt aaatatctca agcatgctgc acatgtccaa gcacctttac atgaatatct      2100
     aaaaggagca aagaagaaag ataaaagaaa aatagactgg aatgatacta caaaagcctg      2160
     tttcgaaaaa tgtaagcaag atttggcttc gactaccatg ctcgtacatc cagatcctca      2220
     acttcctcta cgactttgca cagatgcctc tgatgttgcg atcggagctg ttttagaaca      2280
     atacgacgac aatggttgga aacctttagc attcttttcc aagaaattat cagatgccca      2340
     aaagtcatac agcacctacg accgagagtt gctaggaatc tacctctcca taaaaaattt      2400
     caagcactac ttagaaggta gagatttttc gatttttaca gatcataagc ctcttatttt      2460
     tgcttttaag caaaagaacg acaaggcttc gcctagacaa cttcgtcatc tccagtatat      2520
     ttcacagttc accaccaaca tcgttcatat tcctggacat gacaatatca ttgctgataa      2580
     gctgtcccgg atagatgaag tacactcctt agattatgat gtcattgctg acgctcaagt      2640
     ctctgatgct gaactcgaga gcttactcca caacaacaca tctagcctcg aatttaagaa      2700
     acatgaatta ccatctggta aacagttatg gtgcgatatc tccacaaaca aaatccgccc      2760
     atttattccg aagaactatc gaatggatac ctttcatcta gttcacgact tatcacatcc      2820
     cggtgttaag acaaccatca agttggtaac ttctcgattc atttggccta acgctaaagt      2880
     tgacgttaga aaatgggctc aatcgtgtgt tgcttgtcaa agaaataaaa tcaacagaca      2940
     tacaaaatcg gagattggaa tctatcaaga acctgacgaa cggtttgaaa tactgcacat      3000
     ggatattgtt ggaccacttc caccttcgga tggattttca tattgcgtaa ctattataga      3060
     tcgtttcacc tgctggatgg aagttattcc agttcgaaca atcactgctg aagccgttgc      3120
     tagagcattc tacgaccact ggattacacg atttggtgtg cctgctcgtg taattaccga      3180
     tcaaggaagg cagtttgaat cagacttatt tcgcagcctc gccgcacttt tcggaattaa      3240
     agttcaacat acaaccgcat accatcctca atgcaatgga aaaatagaac ggttacaccg      3300
     cacattgaaa gcagccatcc gagctcataa ttctgttgat tggacatcga atctgccgac      3360
     gatcctactt ggattgcgtt caacacttcg taacgactca cagcactcag tagcgcaaat      3420
     ggtttttggc aaacctattc ggttacccgg agaatttttc caagaatctc gaatcaagat      3480
     tgacaccgat gcgtttgttg ctcggttaat gcgacaaatg gactcgttac gccctttacc      3540
     aactagacat aattcgaacc gacacgtatt cgttcatgcc gacctggaat cgacatctca      3600
     cgtatttgtg cgtatcgaca gggtaaagaa gcctttagaa cctccgtatg aaggtcccta      3660
     tagagtgtta aaacgagaac aaaaatattt cactctgcgt ataaaaggaa aagacgtggc      3720
     aatatcaatc gaccgcctta aaccagcata catgctctca gaggacgttc ccatcgcttc      3780
     agatcctctc gcttcggatc ctctcccttc ggactgtgct acgcccgatc cagatgacaa      3840
     cactgtttcg catctaccga agacgtcaag aaaaggccga cagattcgcc tgccagtccg      3900
     ctttagtgac gacatttcta ttaaaacttt caattaaatt tacgtttcta ttcagtgcta      3960
     gtgtcagtgg ttttatttca tgttgtatct ttatttcatt tgtataatat gttttgtttt      4020
     tgtcgtaacg tgataccgtt actgaaaggg gagtga                                4056
//
ID   Gypsy-12_OrIn-LTR repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-247
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1519-1519 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 247 BP; 81 A; 53 C; 35 G; 78 T; 0 other;
     tgtagggtac atttaaaaat cccgcttatt taaaaatccc gcttttaaaa tcgattagtt        60
     gtaagtgttc gcgccttctg tcggcgcgcg caactcagat tagattattc ttgtttcgat       120
     aacccgctca ctcactctgc cttgtcctcg tgtgaaaagt aaaaaatatc aaaaaagtat       180
     aaaatataaa gctcaatcaa aaagtattct ttgccattct gaaatctcct tcaataaaat       240
     tccaaca                                                                 247
//
ID   Gypsy-12_PBa-I repbase;    DNA;    INV; 7718 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-12_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7718
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 693-693 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..1635
FT                 /product="Gypsy-12_PBa-I_1p"
FT                 /translation="MLRTPVKGEKETDMTTRAQKGKLANDDAEMTSVDRPG
FT                 APKTKYTDSEFDVMQANMAKRAAQLQADADALQREREEIRAESAALRRDRA
FT                 EAEQSRAAVREMNNMLAAMRAELNNIRHEIETRRDLPPRSPSLPAGQRFTE
FT                 TPALFGELNESGTELPPAPKITYREATEFVPIFDGYNIPLSKFLGACRQAR
FT                 DILPPHFERPLTRLLVAKLRGHAHSAVADEPCDTVTQLSDLLNSAFGSIKS
FT                 VAQYRGELTAVHLKSGEHILDYIDRVKELRASIRDGERRAHGTIDSATSRE
FT                 IDELTASCFCEGLPTPLRLQLKPEHFHQPFEAFAAAKTIAKRDEIERQRYG
FT                 MPPRQGPSPNKQILSANRRFPETDAGPSLRYRQPAPPERRRSPPRLDTYRD
FT                 RDRNYSPRYPPEWPERRDEARRAAPLYGKNESSMTVESDRRPRDFGPSRDN
FT                 KWCRYCKNRGHEIEECRKRQYNNSRLHEQGNGRDPPRGTDAARADPLRNTR
FT                 PVNTVEAVREEASESQS"
FT   CDS           5620..7587
FT                 /product="Gypsy-12_PBa-I_3p"
FT                 /translation="MELHRIIHLILLPATCLGLMGYDCGGSGLNITTLSLL
FT                 DIGTCDVENLEPESTETYVQLMQTSEYESITAVQCRVEIDRTIYYCGMHSH
FT                 VSIVSDGRKQYVKEIGKENCQRIHNTGTLNVGTAVIDRLRVNATNHRSATM
FT                 AGVAHTDGSCTGTQYSDGFGTWEGVIVQAALKIVLRSFDITYKRSADMINL
FT                 PTGTRCQAQYGNCIDYDGTETFWTTPTVDSCHFDQYDILYEGMATKLSPKA
FT                 NNTTPVVYTVTTKDTTFALAKSSEFNLCGYQLYRTEHPKLIILETQRGKTF
FT                 RAKSRISVNNLDIFAYVNSKFVYVEKHVKHQLTRLYHDIMEQKCALERQIL
FT                 QNALSLSAIAPDEMAYRIMKSPGYTAVTAGEVIHIIQCVPVNCKLRHTESC
FT                 YNELPVTYKNTTYFLLPRTRILTKTGTHKDCNELLPNMYKLHGAWYRLTTK
FT                 PLESLPPPIIQPLSKPSWKYVSPDALATSGIYSADDLDRLRDHIMFPVEKP
FT                 SMLNTIARGALGQGIPGGSISIANLLDEEALDKIAESAGKRLWNGFVTFGS
FT                 ASAGVLAIFVIARIIKLVIDTIIHGYALHRIYGWSIHLLGAVWSSITNLLL
FT                 HMGKPMSQPDSPSAERLMPPQRETMDEPLAATAPKGDETNDHARSYSELRK
FT                 YLREDVV"
FT   CDS           join(1710..2054,1943..5635)
FT                 /product="Gypsy-12_PBa-I_2p"
FT                 /translation="MVDTGAAPNLIKKRCLRLDTPVTENDTIYLTGITDGK
FT                 IETLGSTKIEFGGHEITLHVVPDSFPIAQEGILGSDFLRDDATIDFGRGFV
FT                 EWRGIKLPFTRQKGLLVPARGHGQPSMRHYRLRSRICRVARDQIAFHAPKG
FT                 PPCPRARSRATFYVNVSNPEISIGYLPRLSVAEGVYLGEAIVTNRKGKAYA
FT                 QIINATEADQEITIPTIRLGEIEAVASIPPREIRAVNCTTVSRSGEAPRER
FT                 DRITEVRGLLRLDHLNETEANHVDTLIKRNADLFQLPTDQLGYTNAIAHTI
FT                 TTTDNAPVNVKQYRFPPMHREEITKQVDKLLENNVIEHSNSPYNSPLWIVP
FT                 KKPDSQGNRRWRMVIDYRALNEKTIGDAYPLPNITEILDQLGSAKYFSVFD
FT                 LASGFHQIPMHESDALKTAFSTPFGHYHFKRMPFGLKNAPATFQRLMDQVL
FT                 SGLQGIEMFVYLDDIVVYASSLREHEIKFNKLADRLRNAKLRLQPDKCEFL
FT                 RREVTYLGHIIGEDGVKPDPKKIHAVKNFPCPRSTKNIKQFLGLAGYYRRF
FT                 ISNFSKTAKPLTDLLKKEAKFKWEDSQELAFETLKAALCSEPLLQYPDFSK
FT                 PFVVTTDASKFAIGGILSQGPIGKDLPIAYASRLLSPPEQNYSTIEKELLG
FT                 LVYCVNYFRPYLYGHKFQLVTDHKPLTWLHSVKDPTSRLVRWRLKLAEYEY
FT                 EVIYKAGKMNANADALSRNPVMQTLPLTGAREPPPDASASDSDEPLFDGTG
FT                 PRNPQTPIAAENGNLNITSSENSGVSDNLDHPDEHTSEIDTDDGTSASERE
FT                 TTKDENLFDADNVPYRSHFLRIKEIRDSLVNRKDNLVVFVDAQGKPCDLGS
FT                 RILNKQDLLPEPCDAIGRGKIRRVGNKYIIALPIEKNVSSLTILDSIREAL
FT                 GSLTDITRELGLRTLSICKSDVSGIPFSKVDKMFRTTLWDQDLEINVCTNE
FT                 IITPPADDRIKIIEEYHASAFGGHKGVTKTFARIRERYIWPGMKRQIGKYI
FT                 ANCQNCQLNKLTRIKVRQPMVLTDTPDKAFDKISMDIMGPLPTTHLGNSYI
FT                 LTVQDLLTKYSSAIPLKGISAIDVADAFVNEYVCVHGAPKAILTDQGTHFV
FT                 NSLMKNVARKFKITQFRTTAYRPQSNGSVERSHHVLWEYLKQFIDKYKNWD
FT                 KILKLASFSYNTSVHEGTRFTPHELIYGHPARVPTSEPAALDENNESYAEY
FT                 YVNLSNRLNEAQAIAHRNLRNAKLRSKRYYDRNANACTFSEGDRAYLLKEP
FT                 RKDKLSPQYTGPYTIVEILDNNNVKLEIGIGKLRTVHTDKLKKVGGRSPAT
FT                 RQSPPSPHRPEKGEGRRRTSQPSTSKGSSWSYTE"
XX
SQ   Sequence 7718 BP; 2266 A; 2085 C; 1868 G; 1498 T; 1 other;
     aaaactggtg acagcggtgg gatgcgttaa tcgggagaat cggaatctcg atacatctca        60
     ccgacccgcg tcatactcgc gcagtaacga tctcatatgc ttcgtacacc ggtaaaaggc       120
     gagaaagaaa ccgacatgac cacgcgcgcc caaaaaggaa agctcgcgaa cgacgacgcg       180
     gagatgacct ccgtagacag gccgggtgcc cctaaaacca agtataccga cagcgaattc       240
     gatgtcatgc aagctaacat ggctaagcgc gccgcgcaat tacaggccga cgccgatgca       300
     ttacaacggg agagagaaga aattcgggcg gagagcgccg cgctacgaag agaccgcgct       360
     gaagcggagc agagtcgagc cgccgtgcgc gaaatgaata atatgctcgc tgccatgcgc       420
     gccgaattaa ataacattcg ccacgaaatc gaaacacggc gcgacctacc accgcgaagc       480
     cccagccttc ccgccgggca acggtttacg gaaacgcccg ccctcttcgg cgaactgaac       540
     gagtcgggca cggaactccc tcccgcgccg aagataactt atcgcgaggc gaccgagttc       600
     gttccaattt ttgatggtta taacatccct ttgtcgaaat tcctcggagc gtgcaggcaa       660
     gcgcgcgaca tcctgccgcc ccatttcgag agacccctca cgcgtttact ggtagcgaaa       720
     ttgcgcggcc acgcccactc agccgtcgcc gacgagccgt gcgacacagt gacacaactg       780
     tcagacttat taaatagtgc cttcggctca ataaaaagtg ttgcgcaata ccgcggggaa       840
     ttgaccgctg tgcacctcaa atcgggagag catatactag attacatcga ccgcgtcaag       900
     gagctccgag cctccataag ggacggagaa cgccgggccc acggtacgat agattccgcg       960
     acgagccggg agatagacga actcaccgct tcgtgtttct gtgagggtct gcccacccca      1020
     cttcgtttac aactcaaacc ggaacatttt caccagccgt tcgaggcatt cgccgccgcg      1080
     aagaccatag ccaagcgtga cgagatagaa cggcagcgtt acggaatgcc gccccgtcaa      1140
     gggccgagcc caaataaaca aatccttagc gcaaaccgtc gtttccccga aacagatgcg      1200
     ggccctagcc tgcgctacag gcagcccgca ccgccggaac gacgacgctc gcctccgcga      1260
     ctcgacacgt accgagatcg cgatcgcaat tattcgccgc gttacccccc cgaatggcct      1320
     gagcgccgcg acgaagctag gcgagccgct ccgctctacg gaaaaaacga atcgtcaatg      1380
     acggtggaaa gtgacagaag accgcgtgat ttcggaccgt cgcgagataa caaatggtgc      1440
     aggtactgca aaaatcgcgg ccacgaaatt gaggagtgtc ggaaacggca atataacaat      1500
     agccgactcc atgagcaggg aaacggtcgg gatccgcccc gcgggacgga cgcagcgcgc      1560
     gcggatcctc tgaggaatac gcgtccggta aacacggtag aagcggttcg cgaagaagcg      1620
     tccgaatcgc aatcctaaac ttatccgaac attctcacgc cccatcggta actctatccg      1680
     ctagcggctt agtaaaaaca accgatttca tggtcgacac cggggccgcg cctaatctca      1740
     taaagaaacg atgcctgcgc ctagacaccc ctgtaacgga aaacgatacg atttatctca      1800
     ctggtatcac ggacgggaag atagagacct tagggtcaac gaaaatagaa ttcgggggtc      1860
     acgagataac attacacgtc gttcctgata gcttccccat cgcacaggaa gggatcttag      1920
     gatccgactt tctccgcgat gacgccacta tcgacttcgg tcgcggattt gtcgagtggc      1980
     gagggatcaa attgcctttc acgcgccaaa agggcctcct tgtccccgcg cgcggtcacg      2040
     ggcaaccttc tatgtaaacg tttccaaccc cgaaattagc atcggctacc tgccgcgact      2100
     tagcgtcgcg gagggggtct acctggggga agcgatcgtt acgaacagga aaggaaaagc      2160
     ctacgctcaa atcattaacg ctacggaggc ggatcaagaa attactatcc ccacaattcg      2220
     gttgggagaa atagaagccg tcgcatcaat tcccccccgc gaaatccgcg ctgtcaactg      2280
     caccaccgtg tctcgatcgg gagaggcacc gcgcgaacgc gatagaatca cagaggtccg      2340
     aggtctactt aggttagacc atctaaatga aacagaggcg aaccatgtcg atactcttat      2400
     aaaaagaaat gccgatctct tccaactccc cacggatcag ctgggatata caaatgcaat      2460
     tgcgcacact ataactacaa cggacaacgc gcccgtgaat gtgaaacagt acagatttcc      2520
     gccaatgcac agggaggaaa ttactaaaca agtagataaa ttattagaaa acaatgtgat      2580
     agagcattcc aattcaccat acaattctcc cctgtggatt gtgccaaaaa aacccgactc      2640
     tcaggggaac cgacgctggc gcatggtgat cgactatcgc gcgctaaatg aaaagacgat      2700
     aggggacgcg taccccctcc ccaatattac cgaaatatta gaccaactag gaagcgcgaa      2760
     atatttcagc gtcttcgatc tagcgtcggg tttccaccag atccctatgc atgagtcaga      2820
     cgcgctgaaa acggcctttt ccacgccttt cgggcactac catttcaaac gaatgccgtt      2880
     cgggttaaag aacgccccag cgacgttcca acgactcatg gatcaggtac tgagcggatt      2940
     gcaagggata gaaatgttcg tgtacctgga cgacatagtg gtatacgcca gctccttgcg      3000
     cgagcatgag atcaagttca ataaattagc cgatagatta agaaacgcga agctccgcct      3060
     ccagccggac aaatgcgaat tcctgcggag ggaagttacc tacttaggtc acataatagg      3120
     cgaagacggg gtaaaaccag accctaaaaa aatacacgcg gtaaaaaact ttccatgccc      3180
     acgctccaca aaaaatataa agcagttcct ggggctcgcc ggttactacc gccggttcat      3240
     atcaaatttt tcaaagacgg caaagcccct gactgactta ctaaagaagg aggcgaaatt      3300
     caagtgggaa gattcgcagg aactcgcgtt cgaaacgctg aaagccgccc tttgctcgga      3360
     accgttactg caatatcccg atttctccaa accttttgtc gtgacgaccg acgcgtccaa      3420
     gtttgctatt ggcggaatat taagccaagg accgataggc aaggatctcc ctattgcgta      3480
     cgcctctcga ctgctaagcc cgcccgagca aaattattca accatcgaaa aggagctttt      3540
     aggcttagtt tactgcgtaa attacttcag gccatatctg tacggtcaca aattccagtt      3600
     agtcaccgac cataaaccac taacatggct ccattccgtt aaagacccga cgtcgcgact      3660
     ggtgcgatgg cggctaaagc ttgccgagta tgaatacgaa gtaatatata aagcgggaaa      3720
     gatgaatgcc aacgcggacg cgctgtcgcg aaaccccgtg atgcagacgc ttcccctcac      3780
     aggagcgcgc gagccgccac ccgacgcaag cgcgagcgac tccgacgaac cattgttcga      3840
     cggcaccgga ccgcgaaatc cgcagacgcc tatcgccgcg gagaacggaa acctgaatat      3900
     aacctccagc gaaaacagcg gagtaagcga caacctcgac catcccgacg aacacacttc      3960
     cgaaatagat accgacgacg gtaccagcgc gagcgagagg gaaacaacga aggacgaaaa      4020
     tctgttcgac gccgacaacg tgccgtaccg gtcacatttc ttaagaataa aagagatcag      4080
     agacagcctc gtaaaccgaa aggataactt agtcgtgttt gtagacgcac agggaaaacc      4140
     atgtgacctg ggatcccgaa tcttaaataa acaagacctc ttgcctgaac cttgcgacgc      4200
     catcgggcgc ggtaagataa gacgcgtagg caataaatac atcattgcgc tccccattga      4260
     aaagaatgtt tcatctctca caatcctcga cagtattcga gaagccctcg gttcactgac      4320
     cgatataacc cgcgagctgg gcctgcgaac cctctcgatc tgtaaaagcg atgtgagtgg      4380
     cattccgttc tcgaaggtag ataagatgtt tcgcaccacg ctgtgggacc aggacctgga      4440
     aataaatgtc tgtactaatg aaatcattac cccacccgcg gacgatagaa tcaaaataat      4500
     cgaagagtac cacgcatccg ccttcggagg acacaaaggc gtgacgaaaa ctttcgcgcg      4560
     aataagagaa aggtacattt ggccgggtat gaaaagacag atcggtaaat acatagccaa      4620
     ctgccaaaac tgtcaactaa ataaactaac gcgcataaaa gtcaggcaac ccatggtatt      4680
     aaccgataca cccgataagg cgttcgataa aatatctatg gatatcatgg ggccgttacc      4740
     tactacgcat ctaggtaatt cgtatatcct cacggtacaa gatctgctca ccaaatattc      4800
     atccgcaatt ccccttaaag gcatatccgc tattgacgtc gccgatgctt tcgtgaacga      4860
     gtacgtttgt gtacacggcg cgcctaaagc gattctcacg gatcaaggga ctcatttcgt      4920
     gaattcttta atgaaaaatg tggcccgaaa atttaaaata acgcaattta gaaccactgc      4980
     ttaccgacca caatccaatg gctcggtaga aagatctcac cacgtcttgt gggaatattt      5040
     aaaacagttt attgacaaat acaagaattg ggataaaata ttaaaattag ctagcttctc      5100
     gtataacacc agtgtacacg aaggtacccg ttttacccca cacgaactaa tctacggtca      5160
     ccctgcgcgc gtgcccacga gtgaacccgc ggcgcttgat gaaaacaacg agagttacgc      5220
     cgaatattac gtcaacctct caaacagact taacgaagcg caagcgatcg cgcatcgaaa      5280
     cctgcgcaac gcgaaactcc gatctaaaag gtattacgat cgaaacgcaa atgcatgcac      5340
     attcagcgaa ggcgaccgcg catacttact taaggaacca cgcaaagata agctaagccc      5400
     gcaatataca gggccttaca ccatcgtaga aatactcgat aataacaatg taaagctaga      5460
     gatagggata ggtaagttac gtaccgtgca tacggataag ctgaagaagg tggggggtcg      5520
     gagccccgcc acgcgccaat ccccaccatc gccgcatcga ccggagaagg gagagggccg      5580
     acgacgtact agtcaaccgt caacatctaa aggatcatca tggagctaca ccgaataatc      5640
     cacctaatac tactgccagc aacatgcctc ggtctcatgg gctacgactg cgggggcagc      5700
     gggctgaaca tcaccacatt atcattatta gacattggca catgcgatgt cgagaatcta      5760
     gagccggaaa gcacagagac atatgtccag ctaatgcaga cttccgaata tgaaagtatc      5820
     acagccgtgc agtgcagagt ggagatcgac cgcacaattt attactgcgg gatgcactct      5880
     cacgtatcaa tagtctccga cggacgtaaa caatacgtaa aggaaatcgg caaggaaaac      5940
     tgccaaagaa ttcataacac gggaacactt aatgtcggga ccgctgttat agaccgcctc      6000
     agagtcaacg ccactaatca caggagcgcc accatggcgg gcgtcgcgca taccgatggc      6060
     agctgcaccg ggacccagta ctcggacggc ttcgggactt gggaaggcgt gatagtgcag      6120
     gccgccctga aaatcgtcct gcgatctttc gatatcacgt acaaacgatc agcagatatg      6180
     attaacctgc cgaccgggac gcgctgccaa gcgcaatacg gcaactgcat tgactacgac      6240
     ggaacagaga ccttttggac aacaccgacc gtggatagtt gccacttcga ccagtatgat      6300
     attttatacg aaggcatggc aaccaaactg tcacccaagg cgaacaacac gactccggta      6360
     gtatacacag tgacaacgaa agacacgacg tttgcactgg cgaaatcctc cgaatttaat      6420
     ctctgtggat accagttata tcgcacggaa cacccaaaac ttattatcct agaaacacag      6480
     agaggaaaaa cattccgggc gaaatcacga atctccgtga acaatttgga catattcgcc      6540
     tacgttaatt caaaatttgt atacgtggaa aaacacgtga agcaccaact tacccgactt      6600
     taccatgata tcatggaaca gaagtgcgca ctggagcggc aaatactgca gaacgctctg      6660
     tcattatcag cgatagcgcc ggatgagatg gcctatcgaa ttatgaaatc cccaggttat      6720
     accgctgtga ctgctggaga agtcatccat attatccagt gtgtcccagt gaactgcaaa      6780
     ttaaggcata cggaaagttg ttataacgaa ctcccagtga catacaagaa tacaacatac      6840
     tttctgttgc cacgcacaag gatactcacc aagacaggca cccacaagga ttgcaacgag      6900
     ctgctaccga acatgtacaa gctgcacggc gcctggtata gactaactac caaaccgctg      6960
     gaatcacttc cgccccctat catacaaccg ctctcaaaac caagttggaa atacgtgagc      7020
     ccggacgcac tcgccacgag cgggatctat tccgctgacg acttggatcg cctgagagat      7080
     cacatcatgt tcccggtcga gaaaccctca atgctgaata ccatagcacg aggagcactg      7140
     gggcaaggca tcccaggggg aagcatctcg atagcgaatc tgctcgacga ggaagctctc      7200
     gacaaaattg ccgagagcgc agggaagcgt ctctggaacg gcttcgtaac ctttgggtcc      7260
     gctagcgcgg gagtcctggc gatattcgtg atagccagaa taataaaact ggttatcgac      7320
     acgattattc atggatatgc actgcataga atttatggct ggagcatcca tttgctggga      7380
     gccgtttggt catcgatcac taacctgttg ctgcatatgg ggaagccgat gagtcagccc      7440
     gactcgccca gcgctgaacg cctcatgccg ccacaacgag aaaccatgga cgagccattg      7500
     gcagccactg caccaaaggg agacgaaacg aacgaccacg cgcgctcgta cagtgagttg      7560
     cgaaaatacc tacgcgagga cgttgtttaa agactattag tacgaaaagt gtagtgawta      7620
     aatatatata agtcgaagta attcttcctt taccctaata gcgctaagta ggaaaatgtc      7680
     gtgcaatacg cccgacattt tctttccgag gggggagg                              7718
//
ID   Gypsy-12_PBa-LTR repbase;    DNA;    INV; 2557 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-12_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2557
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 694-694 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2557 BP; 693 A; 673 C; 509 G; 682 T; 0 other;
     tgtgacgtca ggagagccgt caggtatatt ttcttttttt tccttttctt tctttcttct        60
     tctctcttac ttatctgcgc agaagcgcca ctgtattaga ccatcgcgtc aataccggac       120
     ggtaatagcc ggctctcccg ccgtccaacg tatggtgtag aagcacccta tcgttataca       180
     cgctatagcc catgcgttaa atataagtca ccggaataat tgtcaacacc atagcgttaa       240
     gcgaaccagt aataaatatc gtcctctgct agataaatat atatataaac aattcctact       300
     attttaccat caaacaagca ccgtcacaat tatcaattac aaatcaaaat taataacaat       360
     gtacagcaac caatatcatt gcgcaacact ttactgttat gtaactgtat ctatatatat       420
     attaacataa aacacattaa caattatatc ttaacgcgtt aatatctata ataatactat       480
     taatcaaatt agatatagag catccgcatt tctgtcgact gcgcatagtc ccctgccgct       540
     cgggccctga ttgggcgacc gacgtatggc atagaaacgc ccatccaatg cagcaccacc       600
     accgccgcca cgtgcgatgg cgtacccacg ccatccgcca tcttgcgcca tagtgccgcc       660
     gccgcagagc acggcagcgc tcgccgaggc tcagacactt gtgttcgcgc cgtcaagcta       720
     caagcatcta actcgtgcaa gtctcagtct caagatctcc gatttcgtaa ttcaactcct       780
     agttttaatt caatttctag ctataattcc taattaagtc gattttataa tattagcatc       840
     tcagtgtatt tgtgaaccga ttaacccgcg aatgtaattt gacttatttt tgaatatatt       900
     agtattaaat atagcctacc acgtgttcat tttatttccg tgccttaaat cacgcgtatt       960
     agtgattgga agtgttcgcg aggttcgtga ggcttcacgc gagataaata aataaattcc      1020
     taaactacat agcgttgatt aaaacaagaa cgccgagcgt ctcctggagc aggtgttgtg      1080
     cgtccatccg cacttaccac gacggagact cgaaattctt ggtcgcgata aataccatcg      1140
     ttcctacgcg aagtcaaaac gcaacgcgta ttggctcgct gccgaacgat aaccattgtt      1200
     ttacctccgt caatatttga ataattcgaa gcctcacacg aatgccgaaa ggcaggaaga      1260
     atcgtggcgg tcgcaagacc ttcatccggc atctcgagta cgacctccac gtggcaacca      1320
     tctacaatta caacgagata attggcaggg aagcagaatt tgacggagag tacgaactcc      1380
     tagtgcatga taagctctgg agtggacggc cagccccgcc agcacccgcc tcctcgacgt      1440
     gcgatctcca attccgacct cggatctcac tcgaggaata tctacgtcga tcatcttaag      1500
     tcacggtagg tgaaccgatt tgataaacta aatgcaagtt ccgctgaccc acgtgtaaga      1560
     aggcccgccg cgcatactcg cgataatttc attaaacgat atattaaaat tgcatgccac      1620
     gtgcatattc cactgcaacg cttcttctca acaaaggaat tcgttgcgta agcaaacgtg      1680
     accgttatcg cacaaaggat agggaagacg acccgaccgg aagggtttta cgaccgatcc      1740
     cttttttttt gagtacagtt ttacctaagt gtagcgattt cactcgagga atgcacgttc      1800
     cagtgctcgt ttctaacttc tttgagaata cactgaaata tccgaaatat tatttagcat      1860
     catgtgcgga cgcacttcac atttgctaga atctttgatt aataatcgtg atgtgcctcc      1920
     ctcgagctaa tttagcacgc ggctcacgca cccatccagc cgccgctttc cgttatcgcg      1980
     tcaattcagt gcgttgcatc accgctttcg gttaccgccg cgtagatgac tcagccgcta      2040
     gatgtttacc caacagcgcg gaaattctct gctatcgttg caaagaatta atacctgagg      2100
     gcacgcttac ataccgtctc gctctatctc attctttcaa attcgggtac accgaacccg      2160
     tggacttctg cgaatgttgt tacgcccctc tctctatcat ccgcgggata gaacattgcg      2220
     acgaatgtac cgaaatatat atagccgccc tacaagtcct tgaggaagag ggggaaataa      2280
     tcgagaacgc tgagggacga tactacgtcg acgaatcaaa ctccgcaccc gacgtgatta      2340
     tttcgcggcg actgttaaac ttttctcttt cattattcca acgcgaagaa taaaaaccag      2400
     ttgagaatat ccaactctcc acctcgatcc aatcgattcg ttgctggcga tttaccgctc      2460
     gatcgctggc agcgttgcca accggcagac gtgtccccct tgtccggtgc tacgcggcgt      2520
     atcgctcccg cggaccgtcg ccgcccgtga cgtaaca                               2557
//
ID   Gypsy-12_PPo-LTR repbase;    DNA;    INV; 118 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-118
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2982-2982 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 118 BP; 31 A; 23 C; 21 G; 43 T; 0 other;
     tgttatgtag gtacctacat cttcaccggt cgggttatac actaatgaat gtacgtattt        60
     tagtcagtcg gttaatacat cttggacttg acacctgcgt tttatttcaa acattaca         118
//
ID   Gypsy-12_RP-I repbase;    DNA;    INV; 3902 BP.
XX
AC   ACPB02012584;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_RP_;
KW   Gypsy-12_RP-LTR; Gypsy-12_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3902
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02012584; Positions    2252    6153.
XX
CC   Positions [2419-2895] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1534..3693
FT                 /product="Gypsy-12_RP-I_1p"
FT                 /translation="MARALTQLLRNGVRFKWGKMQEEAFQQLKDALCSDAV
FT                 LAYPDFKTPFFLATDASGVALGAVLSQNQEGRERPTAYASRHLSPAEQRYS
FT                 ATERELLAVVWATSLFRCYLFGRRFSLITDHAALKWMLHLKDPSALLTRWS
FT                 LKLAEFDYDVVHRPGQKHRNADALSRAVCTVEEQARSSANVDLGLAQERDV
FT                 WCREVRESHKENVTRGSDGIWYMRRGENKTWKALVPETWRTHVIRLHHDTP
FT                 WSGHPGIERTLERLERIFYWPGMARDVENYVKECHLCNQRKTPAGLTVPLG
FT                 EPYITSVPFEQISLDLMEFPKSSEGNKYLLTFIDNFSRYAEAIPLKGQTAK
FT                 ETAYAFIEGIILRHGVPKRVLTDQGRNFVSEFFRTVCKALGIRKIQTTVYR
FT                 PQSNGLKERLHRTLTDSISHFARRDGRDWDHWIRYALLAYNTTRHSSTGYS
FT                 PYFLIHGRDVKLPFDQELTHIPLQASSDQDFIRTLQERLATAREIARKRDS
FT                 DTREARTEMFNKGKKMREFQVGDRVYLLEPAIKEGHAKKLYRPWTGPHQVS
FT                 KKLSPWNYELTLASGGNYITHINRLKPTPSHHNIAAKRRRKNRGKNKQGKK
FT                 VPEENDDRETGGWIGSRSNSEEGLTDFEIITASGERQGEGSSGWPEATTYI
FT                 EDDNGEETEGASSGISVDPDPSWLPERGTGTGENRSPYQLRNRGQSPPGEI
FT                 PTPVRVNARPRMRTVPEHQP"
XX
SQ   Sequence 3902 BP; 1176 A; 815 C; 1022 G; 889 T; 0 other;
     actggtgtca ggtgtggggt aaatggcgtg gccataccta ttcagggaat acaaaccgtg        60
     gaagtgttgc tgaatggaca aaagttctat cagcaatttg ccattgctga agttactacc       120
     cgtggagatg gcattatggg ctgggatatg atgaaacaag tagggatagt agtagatgcg       180
     tcccggggaa taatttcatt ccagaatcaa gaagtggggg atcaccctaa ccgtgaaccc       240
     aggaataaag aacctgttgt cgaggggtta gcaagagttt catccgtacg gaaggtcgct       300
     gttccacctc ctagtgagca gctaatagaa gcaaaatggc caaaaaattt aaacggcgaa       360
     atcctacttg agccgagtcc tttagctaac ccacaaatac gggtagccag aagtgtacat       420
     cgggcagacg gaaggagaac atgggtaaag gtaataaact ccgatgacta tagagaaagg       480
     tcagaggttg ggagttattg aggaaattgc ttccgaaaaa ggggggaaag atgggcacag       540
     tttgataggt tctccaaatg aggatgaaca cctcgtatat tcagtgctag cagagaaaga       600
     gaccgatggt ggggtagcac ctgaacttga agttaaactg ggacacttgg acgagaggaa       660
     taagcaaatg atattggcag tcttgaggag tcatgccaaa ctctttgacc ctcctggtca       720
     cgaaggttgc agtcttccgg tgtttcataa aattgaaacc ttagaggaag ggccggtcac       780
     caaacggccg tttagagttc cttatcacca aagacctgtc attcatcaac atttgcagga       840
     gatgctggat aagggggtaa ttgcgccttc cacgagtccg tggtcagccc ccatagtttt       900
     agttcccaag aagtccagcg aagggaagac ggaatatcgt ttctgcacgg attttagagg       960
     attaaacaag atcaccaaag cagatgtgta tcccctacca ttaataaatg aaaccctaga      1020
     aactttaggt aatagccaat ttttctccac tcttgatctg gcgacaggct atcaccagat      1080
     accgatacat cctagtgatt gtgagaagac ggcattcact acaattggcg gtcattttga      1140
     ataccgcaca atggcattcg gattagccaa tgctccagcc acctttcagc gtactatgga      1200
     ccaattattg gctgaattaa aaggggatga atgtctagta tatcttgatg atattattgt      1260
     ctttggagca acgatagaac aacactgtag gcggctggat tgagtccttg cccgactagg      1320
     tcggctaacc ttaaggtaaa gctagagaaa tgttggttcg cccataccga agtacactat      1380
     ctaggccaca ttgtctccag ggaaggtatt aagccagatc ctgggaaaat ctcagcagta      1440
     aagtcctttc cagaaccaag gaaggcacgg gaggttagag gatttttggg actagccggg      1500
     tattatagac gatttattcg caattttgca gacatggccc gtgcgctcac tcagctgttg      1560
     cgaaatggcg tacgatttaa atggggaaag atgcaagagg aagctttcca gcaacttaag      1620
     gatgcacttt gttcagacgc ggttttagca tatccggatt ttaagacacc attctttctc      1680
     gccaccgatg cttcgggagt agcgcttggg gctgtccttt cgcagaatca agagggacga      1740
     gagagaccca ctgcgtacgc gagccgccac ttgagcccgg cggagcagcg atactcggca      1800
     accgaacggg agctgttggc cgttgtttgg gccacttctc tttttagatg ctacttgttc      1860
     ggaaggaggt tctccctgat taccgatcac gcagcactaa aatggatgct gcatcttaaa      1920
     gatccgtccg ctctgttaac gcgttggtca ctgaagttgg ccgaatttga ttatgacgta      1980
     gttcatcgtc cggggcagaa acataggaat gctgatgcgt tgagccgcgc agtatgtact      2040
     gtggaagagc aagccagatc gagtgcgaat gtcgatcttg gattagctca agaaagggat      2100
     gtatggtgca gagaagtgcg cgaatctcat aaagaaaatg tgacaagagg gtcggacggt      2160
     atttggtaca tgcgccgagg agaaaataaa acctggaagg cattagtgcc cgaaacctgg      2220
     cgaacacatg tcatacgcct acaccatgat actccttggt cagggcatcc gggaatagag      2280
     cgtaccctag agagattaga gcgaatattc tattggcccg ggatggcaag ggatgtcgag      2340
     aactatgtta aagaatgcca tttatgcaat cagcggaaga cgcctgctgg acttacagtt      2400
     cccttaggtg agccatacat tacatcggtt ccatttgagc aaatctctct agatctcatg      2460
     gagttcccga agagttcgga aggaaataaa tatttattaa catttataga taatttttcc      2520
     cgttatgcgg aagcgattcc tctaaagggt cagactgcca aggagacagc ttatgcgttt      2580
     atagaaggca taattttaag gcatggagta cctaagcgtg ttttgacaga tcaagggcgg      2640
     aattttgttt cagaattttt ccgaaccgtg tgcaaagcgc tgggtattcg aaaaatacaa      2700
     acaactgttt accgacctca gagtaacgga ctaaaagaga gactgcatag aacgttgacg      2760
     gattctatat cccacttcgc gagaagagat ggaagagact gggatcattg gattcggtat      2820
     gccctgttag catacaacac tacgcggcat tcttccactg gctatagccc ctactttctt      2880
     attcacgggc gggatgtaaa actcccgttc gaccaggaac tcacccacat accactgcaa      2940
     gcatccagcg atcaggactt cattcggaca ttacaagaac ggctagcaac ggcgcgagag      3000
     atagcaagga aaagggattc cgatacgcga gaggcgcgaa cggaaatgtt taataagggc      3060
     aagaaaatgc gtgaatttca ggtgggcgat agagtgtact tgttagagcc agctataaaa      3120
     gagggccacg ctaaaaagtt ataccgcccc tggacggggc ctcatcaagt tagcaaaaag      3180
     ctatcccctt ggaattatga gttaacttta gcctcgggag gtaattatat tacacacatc      3240
     aataggttaa aaccaacacc ctcacatcac aatatagcgg ccaagagacg cagaaagaat      3300
     aggggaaaga acaaacaagg taagaaagta ccagaggaaa atgatgatag ggaaaccgga      3360
     gggtggatag gaagtagaag taattccgaa gagggcctaa cggattttga aattataacg      3420
     gcttccgggg aacggcaggg agaagggtca tcgggatggc cggaagcaac cacctatatc      3480
     gaagatgata atggggagga aaccgaaggg gctagtagtg ggatatcggt ggatcctgac      3540
     ccctcttggc taccggaacg aggcaccgga accggagaaa accgatcacc ttaccaacta      3600
     agaaatcgcg ggcagtcgcc gcctggggag attcctactc cggtcagggt caacgcacgg      3660
     cctcggatga gaaccgttcc tgaacaccaa ccctaaaaaa atccattaac cttacaattc      3720
     cgatatgtat ccccgtaaaa ataaatacag gttacaagac tcacactcga cgagaggaag      3780
     aggaatgccg gagagaagca ccgacaagca gacgccatca tgaagaggac aagtcgaact      3840
     gggcaaagaa ttaataaaag tgaagtcctt aagaggtgct tcacttttgg aaaaagaggg      3900
     at                                                                     3902
//
ID   Gypsy-12_RP-LTR repbase;    DNA;    INV; 636 BP.
XX
AC   ACPB02012584;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_RP_;
KW   Gypsy-12_RP-I; Gypsy-12_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-636
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02012584; Positions    1616    2251.
XX
SQ   Sequence 636 BP; 181 A; 97 C; 174 G; 184 T; 0 other;
     tgtatgtaac ggtggtggtg aggagaagaa gcagcagtag agtggggagc gctcgatagt        60
     agtggagtgg ggcaagcggc cggttggtct gtgaggtagt atcggccgaa gcgtggcctg       120
     gaatgtagct gcattaaaca gacagttaat acgattacag atcagtaaat ataccgctgc       180
     ttataccgca tcacctggag caccttgctc ggtccgagct aagagagaga gagaggtgca       240
     ggcgaggaga ggagcagagg tgtgaggcac tgcttgattg ggcccagacg gaaggaagcg       300
     acagcgagga ttcttgcgtg aggcacttgt gtactttcat gtgttaaccg ctaacctggg       360
     gagttatttg aagggacttt aattttgtag acttacgtta aattagaatt aaaatattaa       420
     attaagtatt agttcggtag ttattattta gtgttaatag tgtattgggg atcatttggt       480
     aattattatt gttctgtacg cattcagctg aatggcaggg gaattttatt agttaaaaag       540
     aagcgtgttt attttatatt gtaattataa aaatatatgt atataacctc tgaaccatgt       600
     tgtactctaa acacaaccca attccctctc cttaca                                 636
//
ID   Gypsy-12_SI-I repbase;    DNA;    INV; 4948 BP.
XX
AC   AEAQ01024794;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_SI_;
KW   Gypsy-12_SI-LTR; Gypsy-12_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4948
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024794; Positions     865    5812.
XX
CC   Positions [2342-2800] - Reverse transcriptase
CC   Positions [3818-4291] - Integrase core
CC   'ATATGT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1262..3265,3269..4696)
FT                 /product="Gypsy-12_SI-I_1p"
FT                 /translation="MRKMRCIAEGVSESEKKPSASASAPKPKDPREATCRN
FT                 CGKRGHVHTTCRAEATCFYCKAKGHRQFDCPLVKKKTEGQPARQRPAAVTA
FT                 AAVSAEPEEREEVVAAVAQQQETRLELTGSSVRVRLLNVANCRTVALVDTG
FT                 SPVSLVKLDLVANYIEEDKEKLLPPRKQLRSLSCDLLKVVGLIRLDLRIEA
FT                 LGDSKFSNNFYVVENYACDAPMILGRDFLAHEKLSVAYREHEAGSCDSVAN
FT                 LELFAKLPECEVEATLKSLEQILENIETDVGVEGKRKIVEIISEIERTDVA
FT                 PIDDGYAVRVHLKDDSVYAFAPRRFAHGERVQMRDIIDDLLARGIVQPSIS
FT                 PYCARVIPVRKKNGTIRMCVDLRPLNSRVLKQKYPFPRIEMCLSRLTGKVI
FT                 FTLLDLKDGFHQIPVHPDSMKYFSFATPDGQFEYKYLPLGYSEAPAEFQKR
FT                 LMQILNPLTRQEKLIVYMDDILIASETVEENLTTVKEVLSILKRYRFELNY
FT                 EKCLFLKKKIEFLGYIISGEGITLSARHTEAIRNYKSPSNVHEVQRWLGLA
FT                 SYFRKFIKDFAVKAKPIQDLLKKDVAFKFDENCVRSFETLRRELTEYPILK
FT                 VYDPGAETELHTDASSHGLGAILLQKSGNGQWAAVAYYSRTTNNAEKNYHS
FT                 YELEMLAVVRAVERFHIYLGINFNILTDCHALVYAVNKASLNPRIARWTLA
FT                 LQGYQFELTHRQGTRMQHVDALSRCIAYISERPLEQELEIRQLTDPHVKEI
FT                 AHELEFKDSDKFALVDGLIYRKEDDRLKFVVPEPMVASIVRAYHDDMAHVG
FT                 HEKTYQGIRRNYWFPSMRKRIHNYLENCLTCIVSNESPNRLEGETALYPSP
FT                 SAPMQQIHVDHFGPLTLTKDGWKHILVAVDAFTRFTWLFPTKSTTTRETVN
FT                 ALEFIFATFGRPDELVSDRGTAYTSQEFTDFTELHKVKHRRVAVAAPWANG
FT                 TVERVNRFIKSSLIKMIKDPNEWKDHLPRLQYVINNTYHAVTKSTPSMLML
FT                 GYDQRNHLDSDLAHYVRELIAVDTNTDEQREVASKVARRATDSVRQYNKEY
FT                 RDSSKRKPTMYNVGEFVMIRDTQTKPGTSGKLKPEYKGPYRIDKVLGSNRY
FT                 VVKEIPDFNLAPRPLNTILSSDRMKRWIRLDAPTSV"
XX
SQ   Sequence 4948 BP; 1393 A; 1180 C; 1381 G; 994 T; 0 other;
     acctcagaag tgggatcact cccagggaaa ttactcccag cgccgtcagg gacaggatca        60
     gggattgagc atttcgcgcc gtccgcgaag gcaacgggct attccccatt gccgcggaaa       120
     agcgaacagt gtcgtcgagt tgtaaaagcg cggcccgcag aaaaccgtta cggcggtagg       180
     cgagcgcgcg cgaaatttgt cgtgtcgaca cgcgccggcc gcgtgatatc gggcgtggcg       240
     cgacgcgtga agccggaata cgtcgagtca aagaaccgag agtgcgggag tgcgcgcgat       300
     cccaagtcga aggaagtgta gcggagtcca ccgcaagaga ctagaaatgg attgcgagca       360
     tctagagaat gcggcgctag aagtgctgca aaaggaagcg atagcctgcg gattgccgtt       420
     cacaccagac cgagcggcct taatagagtc cattctctca tacagagaga ggaacctccg       480
     agcgtcgggg cgggcgaccg ggccggaaat ccgggagagt cggcagctac ggagcagctc       540
     cgacagacgg tcgagctgct agcgcagaat atgcgacaaa tgcagcagga aatgtgcagc       600
     aagagttcag ggcggagata ttgaaccgcc tgacgccgtc ttgccggaga atcggagtcg       660
     aagcggaagg agtcctggag gaacgacttc cggagaccgc ggcgaacaaa tcgcccgcga       720
     cgatcgccgg atccactggg agtcaagagt ggggaagaca gcagaggctt cctcacggca       780
     atttgacgca gtgactggcg acgcaaatcc ctgaattttc gggttcacgg gatgaggatg       840
     tggccgtctg ggtacaccgt gtggatcgcg tggcgcgcat ccacgacgct cccgatgggg       900
     tcacattgtt ggccgcttca tcgaaactca cgcgaaaagt gaaaacgtgg tacgaatcgc       960
     tcgatggaga gggcatcgag tcgtggagag ctctgaaggc agagctcctc gcaatatatc      1020
     agcgcaatga tctggcgtac agatcactgc aaaaaataga ggcgaggaaa tggcatcatc      1080
     aaaaggagtc ctttgatgat tacgccatcg aaaaaatcgc tttgatgaat cgtctggact      1140
     tgtctagaaa agagaagacg catctgctca taagcggaat cggccacagc gctaccaagt      1200
     cggccgcgct gtcggtagcc gatcttccgc tggaacaatt catggttagg ttaggtgcga      1260
     gatgcgcaag atgcgatgca tcgcggaggg cgtctcggag tccgagaaga agccgagcgc      1320
     ctccgcgagc gcgccgaagc cgaaggatcc aagggaggcc acctgcagga actgtggcaa      1380
     gcgggggcac gtacatacca catgccgagc ggaagcaacc tgtttctact gcaaggcgaa      1440
     ggggcaccga caattcgatt gccccttggt gaagaagaag accgaaggac agccagctcg      1500
     ccagaggccg gccgcagtca cggcagccgc ggtctccgcc gaaccagagg aacgggagga      1560
     ggtggtagca gccgtggcac agcaacagga gaccaggttg gagctcaccg gatccagcgt      1620
     gcgagtaaga ttgctgaacg tagcgaattg taggaccgta gcgttggtcg acacgggtag      1680
     tccggtgtca ttagttaaat tagatctcgt ggcgaattat atcgaagaag acaaagaaaa      1740
     attgcttcct ccgagaaagc agttgagaag cttatcttgt gacctcttaa aggtcgtcgg      1800
     gctaataagg ctagaccttc gtatcgaggc gcttggagat agcaaatttt caaataactt      1860
     ctatgttgtc gaaaactacg catgtgacgc gcccatgatt ctcggccgtg acttcttggc      1920
     gcacgaaaag ctctcggtcg cgtaccgcga acacgaggcc gggtcgtgcg acagcgtagc      1980
     aaatctagaa ttgtttgcga aactaccgga atgcgaggtc gaggccacgc tgaagagcct      2040
     cgagcaaata ttagagaaca tagaaacaga tgtcggggta gaagggaaga ggaaaatagt      2100
     cgagataatt tcggaaatcg agcgtacgga cgtagcaccg atcgacgacg ggtatgccgt      2160
     gagagtgcat cttaaagatg actcggtcta tgcgttcgct ccccgccgct tcgcgcacgg      2220
     cgagcgagtg cagatgcgag atatcattga cgatctgctg gcgcgcggta tcgtccagcc      2280
     gagcatctcg ccgtattgcg ccagggtgat tcctgtccgg aaaaagaatg gcaccattag      2340
     gatgtgcgtc gatttgcgac cgctgaatag tcgcgtactt aaacaaaaat atccttttcc      2400
     gcggattgaa atgtgcttgt cccgactaac gggaaaggtt atctttacgc ttctggactt      2460
     aaaggacgga ttccaccaga ttccggtcca cccggacagc atgaagtact ttagcttcgc      2520
     gacgccggac gggcaatttg agtacaaata cctgccatta gggtactctg aagccccggc      2580
     ggaattccag aagcgactga tgcagatcct taatccgtta acgcgacaag agaaactgat      2640
     agtgtacatg gacgatatat tgatagcgtc cgagacagta gaagaaaatt taacaaccgt      2700
     gaaggaagtt ttgtcgattt tgaaaagata tcggtttgag ctgaactacg aaaagtgcct      2760
     tttcctgaag aaaaaaatcg aatttctcgg gtacattata tccggagagg gaatcacgct      2820
     gagcgcgcgg cacacggagg cgatccgaaa ttacaaaagc ccgtcgaacg tgcacgaagt      2880
     acagcgatgg ttagggctag cgagctactt tcggaaattc attaaagatt tcgcggtgaa      2940
     agcaaagccg atacaggact tattgaaaaa ggacgtcgcc tttaaattcg acgagaattg      3000
     cgtcagatcg tttgagacgt taagaaggga gctcacggag tatcccattt tgaaagtgta      3060
     cgatccgggc gccgaaactg agctgcatac cgatgccagc agccacggcc tcggagcaat      3120
     cctgctacaa aaatcgggta acggccaatg ggccgccgtc gcgtattata gccgtacgac      3180
     aaacaatgcc gagaaaaatt accatagtta cgaattagaa atgctagcgg tcgtgcgggc      3240
     agtagagagg tttcacattt acctataagg gataaatttc aatatactga ccgattgcca      3300
     tgcgttagtg tacgcggtga acaaagcgag ccttaacccg cggattgctc gctggacctt      3360
     ggcgctgcaa ggctaccaat ttgaattgac gcatcgacag gggacaagga tgcaacacgt      3420
     cgatgcgctg agccgttgca tagcctacat tagtgaaagg ccgctagaac aagagttgga      3480
     gatccgtcag ctcacggatc ctcatgttaa agagatagct cacgaattag aatttaaaga      3540
     cagcgataaa tttgcccttg tcgatgggtt aatttaccgg aaagaagacg atcgcctgaa      3600
     gtttgtcgtt ccggaaccca tggtcgcgag catagtaagg gcataccacg acgacatggc      3660
     ccacgtaggg cacgaaaaaa cgtatcaggg aattcgaaga aattactggt ttccgagtat      3720
     gcgtaaacgc atacacaatt accttgagaa ttgtctgacg tgcatcgtta gtaacgagtc      3780
     tccgaatagg ttggagggcg aaaccgcgtt atatccttca ccttccgcac ccatgcagca      3840
     gatacacgtc gaccatttcg gaccgttgac gctaacgaag gacggctgga agcacatcct      3900
     agtagccgtc gacgcgttca cgcgattcac ttggttattt cccacaaagt ctaccacgac      3960
     gcgcgaaacg gtcaatgcgc tcgaatttat tttcgccacg tttggtagac cggacgagct      4020
     agtgagcgat cgcgggacag cgtacacgtc gcaagaattt accgatttta ccgagctaca      4080
     caaggtgaag catcgtcgag tagccgtagc cgccccatgg gcaaacggga cggtggaacg      4140
     ggtgaatcga ttcattaaaa gttcgctaat taaaatgatc aaagacccta acgaatggaa      4200
     agaccattta ccgcgcttac agtacgtaat aaataatacc taccatgcgg taacaaagag      4260
     taccccctcc atgttaatgc tcgggtacga tcaacgtaat caccttgatt ccgacttagc      4320
     gcattatgta cgggaactga tcgccgttga tactaacacc gacgagcaac gagaagttgc      4380
     atcgaaagta gcccgtcggg cgaccgacag tgtacgacaa tataacaaag aatatcggga      4440
     tagcagcaag cgaaaaccga caatgtataa cgtaggggaa tttgtaatga taagagatac      4500
     tcagacaaag ccgggtacga gcgggaaact taaaccggag tataaaggac cttatcgaat      4560
     cgacaaggtc ctcggcagta accgctacgt ggtcaaagaa atacccgact ttaatctggc      4620
     tccccgccca ttaaacacca tactctcgtc ggaccgtatg aaaagatgga tcaggctcga      4680
     cgctccgaca agcgtatgat gtatttttgc aatgtaacct tagaatcaca acaattatcc      4740
     actcgagtca ttagatataa gagagagagc ctgtatagta ttaagataga ttataagata      4800
     atgcgacgaa ctagaattaa ttagcctcgc cgattgtaac tcgccaattc tcctgcggag      4860
     gtatgcgatc gatatttata agacgtctgc aaaataaaaa tccaccctcc ccccacttcg      4920
     ggacgaagca aggtgtgaat ggccgagc                                         4948
//
ID   Gypsy-12_SI-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   AEAQ01024794;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_SI_;
KW   Gypsy-12_SI-I; Gypsy-12_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024794; Positions     268     864.
XX
SQ   Sequence 597 BP; 159 A; 140 C; 192 G; 106 T; 0 other;
     tgtaagaaat atgcgagccg cggcgaaagc gacaaagcga acggcggccg accgatggcg        60
     ccaggtgatc ggcgaagcga gcgggagcgc gagctgtcat gctccgaaat catgacacgg       120
     tacgtcatag cggaccgtta aacgaagggc caatagaata tcgatagggg cgcgagctcc       180
     aaaatcgcgc gaaggagaga tttcgaggac tcgagagaga gcgagcctgg ggaccggtcg       240
     tgtcccaagc cggagtcgtg tcgtgccgtg ccgaaagccg tgcagccaaa ggctgaatag       300
     taaagcttgt gagagtgccg aaaataaagt gtcgtcgcaa cgcatcttgt cgtatcattc       360
     accctgctcc cttccctgga cgttcaagca agaaccagag tgccgggcca gccatctctt       420
     gcattggagc acgtggcgag agagtggagc cggcttacag gaggacaagg agcagaggta       480
     ttaagtcgtg tcgtgtcgtg tcgtgtcgtg tcgtgtcgtc agagatagga aaagcgtgag       540
     agaagccatc cgggaaacat ttaaagtcga gttcaccaaa aggaaacgta tctttca          597
//
ID   Gypsy-12_SiCu-I repbase;    DNA;    INV; 4309 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4309
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5036-5036 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..4308
FT                 /product="Gypsy-12_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGKAGKVKDEKPDPTASSSSSSSSSSTSSTPPKRVI
FT                 MSTIGVLQPFNRDRDDFEMWVGQFRSFLAANDLDASAAKDKCRAVFLSSLG
FT                 LPTYTLLTTLLAPDAPTAKTLDELVKTLKEHFQPAPKAIAERYKFMGRRQR
FT                 HGESVSQFIAELRMLATHCKFTDLEDRLRDQLIFGLNSEAAQRTLFTKKDT
FT                 ITLAEVIQSATAQEAAEASTSLVRGSQSTPQPPPEQVNKNRSQQQKKWKNK
FT                 QPQHEQGGKGKHNENGKSNSNSCPNCGSSKHTTARECPHKNVKCHNCGKKG
FT                 HFARLCRKPQSANNVDIVEIAKIYNVRKNKNIIIMKTKINGHHHDMELDTA
FT                 CGKATLSIDFWKSIGSPKLKKSNVVFRSYTKTLFYPIGEYETTIEHNGQKI
FT                 QHSIPVVDGSSLFGRDLLQKFKIDWEEVDAQCNQVEHSDPTTASAKSLVRE
FT                 FSDVFKAPTAEDRIRHFKAKVVLKDDAQPKFLKARDVPYALRDKVDRELDL
FT                 MEQTGVIERVQYSEWASPLVVVGKPNGRVRITGDYKNTVNNQLCVTQYPLA
FT                 VPEDLFVKISGGNTYSKLDGHNAYHQLELDEASKQFLVINTHRGLYRYNVL
FT                 PQGIASSPAIFQEFMDKMLHDIPKTGSFIDDCITTGSSDADHMKSLREIFD
FT                 RMRYYNYKLNQEKCDILKDKVTFLGHRVSKAGIETCSEKIETILSIPEPRD
FT                 VSALSSFLGLSNFYGKFVPEFATVCEPLYRLTRSNVQWKWTKECRDAFRQV
FT                 KQLLTTTPVLTHFDPSLPIGIATDASKTSVGMVLFHRYPDGSERPISYASK
FT                 VLSDTQRRYSQIEKEGLSIIYGIQKYFKFLCGRKFLLVTDAKPLVSIFGPK
FT                 TQLPAYAATRLHHWAVYLSQFQYEVIYRKTTEHGNADALSRLPTTTVVTSA
FT                 VKEETEEIVNSVVIEQLEVLPVTAQEIRKATSRDTFLSRVLQFHEQGWPSQ
FT                 LSPEDAHLQPFFSRRTELTIVQGVLLWGIRVVIPSKLQDKILQQLHTCHLG
FT                 IVKMKNLARQHVWWPNLDADIEKLAKSCQHCQETSPSPASAPLHPWQFPER
FT                 EWQRLHIDLAGPFLGKMWLILVDARSKWPEVFLMGNDTTSAAVKTKLLEVF
FT                 ARFGLPQQIVTDNGRQFISDEFSKFLSNNGIKHILSSVYHPRSNGEAERFV
FT                 RTFKEGMKGGKDGPVENQLQRFLFHYRATPHSTTGVSPSELLQSRKLRTAL
FT                 DLVHPDVHGKVATAQANQERNYNQRVKSRELNPDQPVWVRTFSKNEEKWTL
FT                 GTTTRALGPVTYLVNVGGKPMKRHIDHLRPAANNEANHDVLEHSSSGSPSA
FT                 TPQSSPQRQQQQRAPSRQSTPINSPERLPRSQQPSPSSSTAATLPSPPPSS
FT                 PPRVVEEAEAAVGRPKRITKPVVRLQYNKKGGN"
XX
SQ   Sequence 4309 BP; 1271 A; 1073 C; 950 G; 1011 T; 4 other;
     ttggcgacga gtctgatttt ttaccgtata cgagtgtcag agttttcgga aattttctca        60
     aattttctgt aagttgcagt gatccttaca attacgagtt actagttttt tacacaaccc       120
     atgtctggga aagctggtaa agttaaagac gagaaacctg atcctacagc aagttcaagt       180
     agttcttcaa gttcaagttc aacttcaagt acacctccaa aaagagtcat catgtcgacc       240
     atcggtgtcc tccagccttt caacagggat cgtgatgatt ttgaaatgtg ggtgggtcag       300
     ttcagatctt ttctcgcagc taacgatttg gacgcctcag cagcaaagga taaatgccgt       360
     gccgtcttcc tttcctcgtt gggtttacct acctacacgt tgctcaccac actcctggct       420
     cccgacgctc ccaccgccaa aactctggat gagctggtta aaacgctgaa agagcatttt       480
     caacccgccc caaaggccat cgcagaacgg tacaagttta tgggacgacg ccaacgccac       540
     ggagagtccg tttctcagtt tatagccgag ctcagaatgc tggctactca ttgcaagttt       600
     acggatttgg aggatcgtct acgggatcaa ctgattttcg ggctcaactc tgaagcagcc       660
     cagcgtactc ttttcaccaa aaaagatacc ataacattgg ccgaagtgat tcaaagtgcc       720
     acagctcagg aagctgccga agccagcact tccttggtca gaggtagtca gtctacacct       780
     caaccacctc cggagcaagt caacaagaat aggtctcagc agcagaaaaa gtggaagaac       840
     aaacaaccgc aacatgaaca gggaggaaaa ggcaagcata acgaaaacgg aaagtccaac       900
     agcaactcct gccctaattg tggttcaagt aagcacacca ccgcccgtga gtgtccccat       960
     aaaaatgtca agtgtcacaa ctgtggcaag aaaggacact ttgctcgttt gtgtaggaaa      1020
     ccccaatcag ccaacaacgt ggatattgtg gaaattgcca agatctacaa cgtaagaaaa      1080
     aacaagaata tcattatcat gaagacaaaa atcaatggtc atcatcatga catggagctg      1140
     gatacagcat gtggaaaagc gaccctctcc attgattttt ggaaaagcat tggttcacca      1200
     aagttgaaga agtccaatgt cgtcttccgg tcctacacaa aaactctatt ctaccccatc      1260
     ggggaatatg agacaactat cgagcacaac ggtcagaaga tccagcacag cattccagta      1320
     gtggacggct cctccttgtt cggaagagac ctcctccaga aatttaaaat cgattgggaa      1380
     gaagtggatg ctcagtgcaa tcaagtggag cattctgatc caacaacagc atcagcaaag      1440
     tctctggtac gagaattttc agacgtcttc aaggccccca ccgctgaaga cagaatccgt      1500
     cacttcaaag caaaggtagt tttgaaagat gacgctcagc ccaaattcct taaagcaagg      1560
     gatgttccat atgctcttcg agacaaggtc gatcgtgaat tagatcttat ggagcagaca      1620
     ggagtgattg agagagtcca gtactctgag tgggcgtcac cgttggttgt cgttgggaaa      1680
     ccaaatggtc gtgtacgtat tacgggtgac tacaaaaaca cagtcaacaa ccagctctgt      1740
     gtcacccagt acccgttagc agtaccagaa gatttgttcg tcaagataag tggtggtaac      1800
     acgtattcca agctggatgg tcacaacgcc tatcaccagt tggagttaga tgaggcaagc      1860
     aagcagttcc tggtcatcaa tacgcatcgt ggactgtacc ggtataatgt ccttccacag      1920
     ggcattgctt cctcaccggc aatcttccag gaattcatgg acaagatgct ccatgacatc      1980
     cccaaaactg gctcattcat cgacgattgt atcacaacgg gaagcagcga cgctgaccac      2040
     atgaagagcc tcagagaaat ttttgaccgt atgagatatt ataactacaa rttaaatcaa      2100
     gagaaatgtg acattttgaa ggacaaagtt acgtttttgg gtcatcgagt gtccaaagca      2160
     ggaattgaaa catgcagcga gaagattgaa acaattctct ccattcccga gcctcgtgat      2220
     gtctcagcat tgtcttcatt ccttggctta tcaaactttt atggcaagtt tgtgcctgag      2280
     tttgccactg tttgtgaacc gttgtaccgt ctgacacgca gcaacgttca gtggaaatgg      2340
     acaaaagagt gccgtgatgc atttcgtcaa gtcaagcagt tactcacaac tactccagtt      2400
     ctcacgcact ttgacccaag ccttccaatc gggatagcaa cagacgctag caagacatct      2460
     gtcgggatgg tcctgttcca cagatacccg gatggatctg aacgtcctat ctcctacgcc      2520
     tccaaagtcc tcagcgacac gcaacggaga tatagtcaaa ttgaaaagga gggcctttcc      2580
     atcatttatg gaatacaaaa atatttcaag ttcctgtgcg gaagaaaatt tttgttggtg      2640
     acagatgcaa agccgcttgt gtctattttt ggccctaaga ctcaactacc tgcgtacgca      2700
     gcaacacgac tacaccactg ggcagtctac ctaagccaat ttcaatacga ggtcatttac      2760
     aggaagacta cagagcatgg taacgccgac gctttaagcc gtttgcccac aacaacagtg      2820
     gtcacgtccg ccgttaaaga agaaacagaa gaaatcgtaa attctgtcgt tattgaacaa      2880
     ctggaagtcc ttccagttac agctcaagag atacggaaag caacaagtag agacactttc      2940
     ctttcccgtg ttctccagtt ccatgaacaa ggttggccaa gtcaattgtc tccagaagat      3000
     gctcatctgc agccgttctt cagtcgtcgt actgaactca ccattgtcca aggagtcctc      3060
     ctctggggca tacgagttgt aattccgtca aaattacaag ataaaattct gcagcaactw      3120
     catacatgcc acctcggtat tgtgaaaatg aaaaatttag cacgtcagca cgtgtggtgg      3180
     cccaacctag atgcggatat agaaaagtta gccaaatcat gccagcattg tcaagagacc      3240
     agtccaagtc cagcgagtgc tccactccac ccatggcaat ttcccgagcg ggaatggcag      3300
     cgacttcata ttgatttggc aggccccttc cttggaaaaa tgtggctcat cctcgtggac      3360
     gcacgttcca agtggccaga agtgttcctc atgggaaatg acactacatc cgcagcagtg      3420
     aaaacaaaat tactcgaagt ttttgcccgt tttggattgc cccaacaaat tgtcaccgat      3480
     aatggtcgtc aattcatctc ggatgaattt agcaaatttt tatccaacaa cggcatcaaa      3540
     catatccttt cgtctgtcta ccacccamgg tcaaatgggg aggcagaaag gttcgtacga      3600
     acttttaaag aaggaatgaa agggggaaag gatggaccag tggaaaacca gttacagcgt      3660
     ttcctgttcc actacagagc kactccgcat tcaactacgg gagtcagtcc atccgagctc      3720
     ctccagtcac gcaaattacg taccgctctt gatttagtgc acccggacgt gcatggcaaa      3780
     gttgccaccg cccaggctaa ccaagaacgg aactacaatc aacgagtcaa gtcacgtgag      3840
     ctgaatcctg atcaacctgt gtgggtccgt acgttctcga aaaacgaaga aaagtggact      3900
     ttgggaacaa caacacgagc cctaggccct gttacttatc ttgtgaatgt cggtggcaaa      3960
     cctatgaaac gacatattga ccacctgaga ccagcagcaa acaatgaagc aaatcatgat      4020
     gtgttggagc attcatcatc aggatcccct tcagccacgc cgcagagcag tccacagcgt      4080
     cagcaacagc aacgtgctcc gtcccgccag agtacgccaa tcaacagtcc agaacgactt      4140
     ccaaggtcac agcaaccttc accgtcgagt tcaacagcag ctactttgcc gtctcctcct      4200
     ccatcatctc cacctcgagt tgttgaagaa gctgaagcag ccgtcggccg cccaaagcga      4260
     attaccaagc cagtcgtccg attgcagtac aataagaaag ggggaaata                  4309
//
ID   Gypsy-12_SiCu-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-293
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5089-5089 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 293 BP; 91 A; 61 C; 45 G; 96 T; 0 other;
     tgtagtgtat gcaaactagc ttgttagtca gatttagatt attcctaatc tatcattcaa        60
     ttaagtatat ttgtttatct gttgcttgtc agactgtctc gatgttagta attggtcacg       120
     taggccaaac gatcatgttg taagctagct atgactagcc gtgtctttct gagatccacc       180
     tcagacctca ttctactctg ttcaagataa caccaactct gcgtatacat taaggcaaag       240
     aacctacatt caataaagat aaacctattg aaataaacct accaaactct aca              293
//
ID   Gypsy-12_SiOr-I repbase;    DNA;    INV; 6060 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-6060
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 348-348 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1035..2750
FT                 /product="Gypsy-12_SiOr-I_1p"
FT                 /translation="MEVNLLSHEELKYELSIRGLPTTGNFAQKRTSLREAL
FT                 RLEREGHVPMPTTTNFDPVSELCMCRAKLYAIERDIQRFDTVNKDNEYKRL
FT                 NSQLVHSISRLSRIFSDVEQDCSVKKELLDKAMKLKEDLEVVYNGGISQEG
FT                 VPSINENVVTTDLINVDDMITVPLQNCNDTFESLIDMPLADFEQRSRLVPE
FT                 RHDRQPPRPPVSSPNFVPPPQASNVSTSNALQPNFSSVPSTVFRNSHVRFS
FT                 DPVANSSHVANANTTYRDQTLSHPNPVVNLAERLENFQFSPLRGISSTIPQ
FT                 PIQEYNYRHYDIGRWNLTYDGQSSLNDFLERLEELRRSRGISKDQLLRSAP
FT                 ELLTRDALLWYRTKHFLDWDDLVSQLKDAFMPYDYETGIWDEIRRRTQGSQ
FT                 EKVISFIVALENLFRKLPVLPPESHRLQIMKRNLLPYIQSRLATHDIVSIQ
FT                 DLLKFSRSVEETEIRIQRFVPPPTNYRTILEPQLAYRKPNINISAVEQDIA
FT                 PVSNYTQSSEFLNLSEATPNLNVINSSQAKCWNCQEQGHIFSQCTKQRRKF
FT                 CFKCGTDNVTFKTCPKCSKNEPGAR"
FT   CDS           2711..4150
FT                 /product="Gypsy-12_SiOr-I_2p"
FT                 /translation="DMPEVFKKRARRKIDGQVSCDAYQASNPTEVLSRNAD
FT                 LDYIFAHAKGDERPYLEISIYGTTILGLLDSGSTRTILGSPGWNILKNVCK
FT                 LDSSELLSCVVANGESCVSIGTVTLPFNLRDRLALINVLVVPSLRHPLILG
FT                 IDFWSKMGLVPDLRANEWKFRDPLTPIAQVSAVQSLDSLSQSQRKVLDDML
FT                 EKSFSGRTDKLGRTNLVQLEIKTNSPPIKQRYYPLSPALQKVVDKELNEML
FT                 ENDIVEPSNSPWSSPIVMIRKKSDQWRFCVDYRALNKVTLHDAYPLPLINS
FT                 TLDKLRDAKYLSTLDIKSAYWQIPVAEESKPLTAFTVPRRGLFQFKRMPFG
FT                 LTNAPAVWQRVIDQVVGVDLDPYVFVYLDDIIVCTPTFEQHCKVLQEVIDR
FT                 LNRAGLSINKDKCNICKSELKYLGYVVNASGLSVDPEKVEAIVKIPPPKNV
FT                 TEVQTYCWFSVMVSPFCTEFLNCSCTTDKSDQEEC"
FT   CDS           4047..5912
FT                 /product="Gypsy-12_SiOr-I_3p"
FT                 /translation="LKFRRIVGLASWYRRFVPNFSTVVAPLTNLTKKNVKF
FT                 DWSTECETAFRTVQEHLIKAPILSCPNFEKPFTIQCDASDYGLGAVLTQTD
FT                 GDQEHVICYLSRSLTKNERKFSTTEKECLAVLFAIEKLKPYIQATKFYVIT
FT                 DHYCLKWLNSIKDPVGRIARWAIRLQQYDFEIIHRKGKDHVVPDTLSRAVP
FT                 VIDSVDTSLLPDSNQSNTTDRWYKRMCENVTKFPVKFPLWLLKDNQLYKRA
FT                 RSSYPDLINPEDIWLIVVPRNNRSEIIRNHHDPPTCGHLGVLKTVARISQH
FT                 YYWPSMRTDVARYIRKCHICLQAKPEQKPPIGKMLSVQPVASRPWQIVSID
FT                 LVGPLPRSSTGYTHIFSVCDVFSKFVLFFPLRSATAVSVSRWFEDFVILVY
FT                 GAPQKVIADNGPQFKSKIFKHLMEEYKITIQHTANYHPQANPVERTHRVLK
FT                 TMLSCYISDDQKKWDKVLPKVSCAIRSARHDVTGHTPNFLVFGREINYHPV
FT                 TKSPPDSDNVSDVDHEQRSKSLSKLFAEVQKKLQQAYQTSRNRYNLRRRDD
FT                 KFQLNQQVFKRNFVLSDASKQFTAKLNRKYSGPFIITKILSPWSYELSDLT
FT                 GKSLGVYHAKDLKAHPPDDSIDQN"
XX
SQ   Sequence 6060 BP; 1847 A; 1061 C; 1103 G; 2049 T; 0 other;
     aattggcgcc caacggttta aaagaagtta ggttcgcaat ttgtatgaca aacagtcatt        60
     tttttttttt ggtgattaat atttaaactg atatatattt ttttttctaa ttagctaact       120
     caattaaatt tatcgtgaat ttttttttcc tgtattgtat ggtttaaatt acggaatggt       180
     tggttgttat tatatttttt ttggtacctt ttattaatat attttggcac agtgttgact       240
     tgaacaagta ttgcgaatat tattgatagt acagtttgat ttttttttct tgcgcaattt       300
     gaatattttt tcttgggtat atttttcagg atattattga aattttttat gctgatttga       360
     tatttatgtt gctgctgagc tgaacacact ggtgttaggt atattatttt agtttttttt       420
     taacaagcag ttgttaaatg ttatagtact ggttagagtt ttttttatag ttcgaattta       480
     cagttttgct caccgtactc tttgcggatt tttggtgtta cttattttaa cgccaattag       540
     agtagtttag tttattattt tcttttgaga tatattgttg tggacactga tcgcactgtc       600
     gattttatag tgattgatat tttagccttt agagtttaat tttgatcact atagctagct       660
     tttatagctg atttttattt ttttaagcgt ttaggtttat tccagcttat agttttttta       720
     tttttttgtg ggggtcggga ttgcgacttc gtcacaataa ttttacttag tgtacatttc       780
     aaggattttt tttcttgcga tttgatttag acttagattt attttgagta atttagactt       840
     tgattatttg gactttggat ttattgcaga cttttagcag atttaaatta aattattaat       900
     tatagttttt ttttggaaat acttcagtat ttttaatata ttttgcagtt tctttggaca       960
     tttaagttag tattttagat cattgctatt acttttcatt ctttttctaa aattttcatt      1020
     taaatttgaa tacaatggaa gtcaatctat tgtcacatga ggaacttaag tatgagttat      1080
     cgatccgtgg attacctaca accggtaatt ttgcacagaa gcgaacatca cttagagaag      1140
     ctttaagact agaacgtgaa ggtcatgtac caatgcctac tacaacaaat tttgatccag      1200
     tcagtgaact ttgtatgtgc agagctaaac tatatgccat agagagagat atccaacgat      1260
     ttgacactgt gaataaagat aatgaatata aaagactaaa ttctcagtta gttcactcaa      1320
     tttctagatt gagcagaata ttttctgacg tcgaacaaga ttgtagtgtt aagaaagaat      1380
     tactggacaa agctatgaag ttgaaggagg atttagaagt tgtatataat ggtggaattt      1440
     ctcaagaagg tgtacctagt atcaatgaga atgtggttac cacagacttg attaatgtgg      1500
     acgatatgat aaccgtacct ctccagaact gtaatgatac atttgaatca ttgatagata      1560
     tgcctttagc tgattttgag caacgttcaa gattagttcc tgagagacac gatagacaac      1620
     cgcccagacc accagtaagt tcaccgaatt ttgtccctcc gccacaagct tccaacgtat      1680
     caacttccaa cgcactgcaa ccgaattttt catcagtacc tagtacagtt tttaggaatt      1740
     cacatgttag atttagtgat cctgttgcca acagttctca tgtagcaaat gctaatacta      1800
     cctaccgtga tcagactttg agccatccta atcctgttgt aaatttagct gaacgattag      1860
     agaatttcca attttcacct ttacgtggaa tatcctctac aattcctcaa ccgattcaag      1920
     aatataatta tcgtcattat gatattggaa gatggaactt aacatacgat ggtcagtcta      1980
     gtctaaatga tttcttagag agactcgaag aacttagacg ttctagaggc attagcaagg      2040
     atcaattact tcgatcagca ccggaacttt tgactagaga tgctttactg tggtacagaa      2100
     ctaaacattt tcttgattgg gatgatctag ttagtcaatt aaaggacgca ttcatgccgt      2160
     acgattacga aactggaatt tgggatgaaa tcagacgccg tacacaaggg tcccaagaga      2220
     aagtcatcag tttcattgtg gctctagaga acctctttag aaaattacca gttttaccgc      2280
     ctgaatcaca ccgacttcag attatgaaac gaaatctact tccatacatt caaagccgtt      2340
     tagctaccca tgatattgta agcatccaag acttacttaa atttagccgt tctgtagaag      2400
     aaaccgagat aaggatacag agatttgtac caccgcctac aaactaccgc acaattttag      2460
     aacctcaact ggcatatcgt aaaccgaata tcaatatttc tgctgtagaa caagatatag      2520
     cacctgttag caactatact cagtcttctg aatttttgaa cctttctgaa gcaacaccga      2580
     acttaaacgt cataaattca agtcaggcca agtgttggaa ttgtcaagaa cagggacaca      2640
     tcttttcgca gtgcaccaag caacgaagaa aattttgttt taaatgtggc actgataatg      2700
     taacttttaa gacatgcccg aagtgttcaa aaaacgagcc cggcgcaaga tagatggcca      2760
     agtatcttgt gacgcctatc aggcctctaa cccgacagaa gtgttatctc gcaatgcaga      2820
     tttagattat atttttgccc atgctaaagg agatgaacga ccgtatcttg aaatttctat      2880
     atatggcact actattttag gtttattgga tagcggatct acaagaacaa ttttgggttc      2940
     tcctggttgg aatatattga agaatgtctg taaattggat tcttctgagc ttttgagttg      3000
     tgttgtcgca aatggcgaat cctgtgttag tattggcaca gttactctac cttttaattt      3060
     gagagaccga ctagcattaa ttaacgtact ggttgtacct agtttacgac atccactgat      3120
     tcttggaatt gatttttggt cgaaaatggg actagtacca gatttacgtg cgaatgaatg      3180
     gaaatttaga gatccactga cacctattgc tcaagtttct gccgttcagt ctttggattc      3240
     actcagtcaa tctcaaagaa aagtgttaga tgatatgcta gagaagtcat tttcaggaag      3300
     aacagacaaa cttggacgta ccaacttagt acagcttgag attaagacca attctcctcc      3360
     gataaagcaa cgttactacc cattgtcacc ggcattgcaa aaagtagtag acaaggagtt      3420
     gaatgagatg cttgaaaatg atattgtcga gccttccaat tctccatggt catctcccat      3480
     tgtaatgatt aggaagaaat ccgatcaatg gcgtttttgt gtagattatc gagcacttaa      3540
     taaagttaca cttcatgatg cttatcctct tcctttaatt aattcaactt tagacaagct      3600
     tcgagatgct aaatatttat ccactcttga cattaaatcg gcttattggc agattccagt      3660
     agctgaagaa tccaaaccgt taacagcttt cactgtaccc agacgtggtc tatttcaatt      3720
     taaaaggatg ccttttggat tgaccaatgc cccagccgtt tggcaaagag tcatcgatca      3780
     agtagttgga gtagatttag atccatacgt ttttgtttat ctcgacgaca ttattgtatg      3840
     cactcctact ttcgaacagc attgcaaagt gttacaggaa gtaatagatc gtcttaatag      3900
     agcaggactt agtataaaca aagacaaatg taacatctgt aaatccgagc ttaaatattt      3960
     aggatatgtc gtcaacgcat ctggactttc cgttgatccc gagaaagttg aagctatcgt      4020
     aaaaattccg ccgccgaaga acgtaactga agttcagacg tattgttggt ttagcgtcat      4080
     ggtatcgccg ttttgtaccg aatttctcaa ctgtagttgc accactgaca aatctgacca      4140
     agaagaatgt taaatttgat tggagtactg aatgtgagac agcctttcga actgttcaag      4200
     aacatttaat taaagcaccc attctttcat gtccaaattt tgagaagcct tttactattc      4260
     aatgcgacgc atctgattat ggtttaggag ccgtattgac tcagacggat ggtgatcaag      4320
     aacatgttat ttgttatctc agtcgatctt taacaaagaa cgaaagaaaa ttttcaacta      4380
     ctgaaaagga atgtcttgct gtgctgtttg ccattgaaaa gcttaaacca tatattcaag      4440
     ccacgaagtt ttatgtcatc acagatcatt attgtttaaa atggcttaat tccattaagg      4500
     atcctgttgg tagaatagcc agatgggcaa tcagacttca acaatatgac tttgaaataa      4560
     ttcaccgtaa aggcaaagat catgttgttc cagatactct gtccagagcc gttcctgtta      4620
     tcgactccgt tgatacttct ctactcccag atagtaacca atccaatacc acagaccgtt      4680
     ggtataaacg tatgtgtgag aatgttacaa aatttccagt gaaatttccg ctttggctgt      4740
     tgaaagataa ccaattgtat aaacgagcaa gatcatctta tccagactta attaatcccg      4800
     aagatatttg gttgattgtt gtacctagaa acaatagatc tgagattatt agaaatcatc      4860
     atgacccgcc tacttgtgga catttaggtg ttttaaagac agttgctagg atatcacaac      4920
     actattattg gcccagtatg agaactgatg ttgcaagata tatcaggaag tgtcatattt      4980
     gcttacaagc aaagcctgaa cagaagcctc ctatcggaaa aatgctaagt gttcaacccg      5040
     ttgcttcaag accttggcaa attgttagca ttgacttagt tggacctctt cctagatctt      5100
     ctactggata tactcatata ttttcagttt gtgatgtttt cagtaaattt gttttatttt      5160
     tcccactcag atctgctaca gctgttagtg tttcaagatg gtttgaagat tttgttattt      5220
     tagtttatgg agctcctcaa aaggttatcg ctgataatgg tcctcagttc aagagcaaaa      5280
     tatttaaaca tctaatggaa gaatataaaa tcacaatcca gcataccgca aattaccatc      5340
     ctcaagcaaa ccctgtcgag agaactcatc gagttttgaa gactatgctc tcatgttaca      5400
     tatctgatga tcaaaagaaa tgggataaag ttttgccgaa ggtatcttgt gctattagat      5460
     cagctcgtca tgacgttact ggacacactc caaatttctt agtgtttgga cgagagatta      5520
     attatcatcc agttaccaag tctccaccag attctgacaa tgtatctgac gttgatcatg      5580
     aacaaagatc taagtcatta agtaaacttt ttgctgaggt gcaaaagaaa cttcaacaag      5640
     cctatcagac ttcaagaaac cgatacaatc ttaggagaag agatgataaa tttcagctaa      5700
     atcagcaagt gttcaaacgg aactttgtac tctctgatgc atcaaaacaa tttaccgcca      5760
     aactgaatcg aaaatatagt ggaccgttta ttataaccaa aattttatct ccttggtcat      5820
     atgaactatc tgatctcact ggtaaaagcc tgggtgtgta tcatgccaag gatctgaaag      5880
     ctcatcctcc agatgattcc attgatcaaa attaatttta atctaatctc acatacttac      5940
     cgcttatcgt accgttaata gattcatatt tttttttata cctctagctt taatttaaga      6000
     ttttattttc tcatttagta taagtttctt cgaaacttat tttgtaagaa ggggaggtgt      6060
//
ID   Gypsy-12_SiOr-LTR repbase;    DNA;    INV; 2662 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-2662
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 381-381 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2662 BP; 701 A; 425 C; 395 G; 1141 T; 0 other;
     tgttacggga tttatattct catacatttc ttttctaatt taatttattt tgggctcaat        60
     attgtaattt tagagacatt tcttgaattt agtttattgt tttatcaaac ctggaacatt       120
     cgccatttct ttaaaatcta aaaacaaatt ggtaaataat ataatttcta ggctaaaata       180
     tgtttattta ctgttgcctt acactttttc ttttaacaac ataaaaaagg atctaatttc       240
     actgtaaatt tctctgtctc gtactgcttt atagttcttc gaagctaaat acgatgcctt       300
     ctatttcaac aagttaaatt tggtttatat tatcatattt tacacaaatt ccttggaatg       360
     taccattatt ataaaaatgc tatagctttt cccatgatta tagtatggat ttcactctat       420
     tttgaatcga acaagtgttg atatcagtgt agcacattca attcttgaac atcataaact       480
     aaaagcaaat aaaacgttta gtaattatta atagatactt ttaaatagat tacttacgat       540
     gtgtggctga tatttagtct cttaaaggct tgcaaaatcg taattttatt aaaattagct       600
     tgagtaatgt tttgacagcg atgtgtttac agcggaataa tatttgaggt tattttgtaa       660
     tttcttattc tgcggcaacg taaatatcga gcatattagc attagttacc gaattatagg       720
     gtttgattga cagttatata tgacatttat atatgatggt gactttttga ttgtttacat       780
     tgtatattgg ttgcgtaata ttattttcct gtagtacttt cgatttcatt cttcgatttc       840
     cgtttacttt caatactttc gatttattga ttttttatat tttacgtatt tcatgttttg       900
     ctcttaggga gtatgttatt tggtttattg gcaacattga tttgctgtgt tttttttact       960
     gccctttttg tcccggtgtt catccatgat ttccttcttc tagaacgatc cgtctttgtg      1020
     tgcagacacg cttttggatc aagccttgtg ctgatataag ttcttgcaag ttctgttaaa      1080
     taattattta gtgaatagtt tgccgtttgc actattcaag tggagttttc cgattttcta      1140
     attattttaa ccgcacgaat ttgagagaag agttgatgaa tggccacatg acatctcagg      1200
     tatgttttac gccattttgt agtttttctt gaaggtaatt ttgaacttct ttttcaggcc      1260
     atttaattta atttaatttg gatttaattt agtttaactt cgtttttatc tccatgtaat      1320
     tttggatttg atctccattt tacctttttg tactgctgga tctattattc gttgccgttg      1380
     ctgccgtttc ttcttgccat gaggtcccta cgtcaccctt tgaataagag gtcacccgtc      1440
     cgtgttcacc atgtggttct gagctaacca tcacctcatc acctagctca tttgatccag      1500
     aagaccttct gagaccgacc actatgggat attgaagcca gctcaccgtc cgccgtccgc      1560
     cgtctccata agcagtcaaa aagtcagcaa ccatctgagt caccgaccac cgagattctg      1620
     gaatgtcctg ataagtaccc atttcatttc attttactgt tttgagttat ttccgccgaa      1680
     cagtcttatt aatcgtttat tgagtttaac tatttaattt gcgtatttga gatagttata      1740
     gtttaacttc tttagacttt ttacttgcgg ctcgatctgt gaacttacta gtaagtatcg      1800
     cgagtacgta tttccgtttt agtaatttat agcgtttgtt atatatccat tttgagattt      1860
     atgatatcga tttaaccgtt ttaagtttag acactatcgt tcaagttacc acttgtgtac      1920
     tgccgatact ttttgagctg tactgttttg tagttaatta cttttcatta tttgccttag      1980
     tatataaatg tactgagtta ttaagtttat ttcagtataa gatttaaata gttttatctg      2040
     atatattggt atatttctat aatttagttt gatatattga caactgattt tctcgtctta      2100
     agccatacat acaatattta aagttttacc tttttatcgt gattgctgct gaaccttctt      2160
     tattaaatga gttaagtgat tcctattgtt ttatttagta ttttgtttcc cactttcttt      2220
     cagaaacatc acttttactc ttagggtcca gaaagtgggt ggcgcttatt tatatttaat      2280
     ttagacacat ttagttataa ccccccctac tctccgtaga agctaccgat ttgggcattg      2340
     acctgtttga ggagtaagag ttaaataatt aaataataac tattagtttg ttgctgtctc      2400
     ttttctttat cttttaattt atctcaccgt aacatagttt tatttaattt aacacagcta      2460
     taatataaat tatagttttt ctgttgtcat aagagaaaaa aggttttgat attttgacac      2520
     ccttttatag ctcttttttg tatcagtaaa tatattttat ataatatttt aattcacctt      2580
     tctcttttac ctttctatat ttcttcttca ttatttttat cttattttct tttttttttt      2640
     ttattttttt tttcttatga ca                                               2662
//
ID   Gypsy-12_SpEx-I repbase;    DNA;    INV; 5755 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5755
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4081-4081 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           891..2087
FT                 /product="Gypsy-12_SpEx-I_1p"
FT                 /translation="MADEIKSLIAKLKEVRTYLIKLGPKRRKGEILLKKAD
FT                 ESYVLFSTFSSVLAIISDQVKLGKSDKDTEKNINELSKEFLKLYEEVKKLC
FT                 EVVEMETFSLKTALGLLPLMTDDETVTQQLIDNIEYYGSTLSEAACKVKLI
FT                 NFVLKSRLSQAGKLKLNESYSTIGELIQDMKCKLLAQKSANSIQTKLQQLR
FT                 QNDKTINDYGQELSQLFVDLTISQSKGDANSYKVLKPLNEKMAIKRFADGL
FT                 RNRRLSTIIASRNFDSLKDAVQAALDEEITTATTDIIGTYNSYKPRFRYQG
FT                 GYQPRGHLRGRYGRGYKPNYQDNRYRSQGYSQQYHNGDRKTFYRGGMVTRG
FT                 VSQQKRNHSGGYHNHQRGFYRRPQKHGVHMLAEEQETEQNNPCEDRGLSEN
FT                 QFFRD"
FT   CDS           2065..5712
FT                 /product="Gypsy-12_SpEx-I_2p"
FT                 /translation="AKISFFGTNHILIGGNSIIIKLKTNNQDWSWLIDTGA
FT                 TISAVKYSYIRERNIPITKARMNIKGIGGSLESIGFTKLKILIGNELIEQV
FT                 VYVFSSLPCPTAGILGHNFLNKHKAQINYRNKSITLSINQNKTITLQYGNT
FT                 LVQTCYNFKKRSESINYIQTDRVNDCVICAEEITKGVFIASTIVKPINGRI
FT                 PVQVLNTNEEDITISGLKPKLRDLDEYDYCYFGESIKNAERVKNLLGQLNL
FT                 KHLTLEEQVEIEKICARYADIFQLPGDKLSVTKLYKHNIQLKPNVDPVFVK
FT                 NYRIPHSQKKEIDKQIDQMLKDGIIEPTQSEWSSPILLVPKKSIVSGEKKW
FT                 RLVIDYRKLNERIKDDTFPLPNITEILDSLSGSVYFSHLDLFSGYYQQELE
FT                 PDSRKYTAFNSGQYQMTRMPMGLKTSPSAFSRMITLAMSGLTYEKCFVYLD
FT                 DIVIFGRSLEIHNKNLLNVFERLQQVNLKLNPLKCEFLKKEVLYLGHVVSA
FT                 DGILPDPEKIKSIKEYPTPSNEKEVKSFVALANYYRKFIPNFAEKAFHLNK
FT                 LGKKDVKFKWDDNCQRSFQELKNAIITPPVLQYPDFSKENEFILHTDASGY
FT                 AIGAVLSNSNGKPVAYASRSLNKAESNYATIEKELLAIVWATKHFRPYLYG
FT                 RHFKIKTDHKPLIYLFNMKDPSSRLLKFRLALEEYHFTVEYIKGKENTAAD
FT                 ALSRIKITSKELKEMNECLYVITRKMANRQMTSNNDNELINSDSTDKGTDQ
FT                 PRVVELTTIPKEGVELQFIKGNELNKVNINDKTNIKESKTLIYLKKEKTLY
FT                 IKLVSPSQMTRRAFVRELGIKCKEWNINKITVRKNKNNNVFVKTLANEIQK
FT                 TKEGSIPSLCIINDVIKITNKDEKKVILNDFHILPTSGHAGERKMYNNIKR
FT                 RYFWSGLEEDIKNYVQKCEKCQKEKYSRYTKEPMTITTTATEAFQKIFMDV
FT                 VGPLERDEENFSYILTIQCELTKYIEAYPMKTKSTKEVAEKFVNNFILRFG
FT                 IPEIIATDRGTEFISTTFQEVCNLLHINKLTSTAYHHQSIGALENSHKSLG
FT                 TYLRIQTDNHSGHWSKWIAYWCFAYNTSVHTETKFTPFELVFGKQANLPSN
FT                 LTIHPEPIYNHESYPLELKYRLQLSQTEARENLIKSKMIRKIKYDKNCNPV
FT                 VYKPNDKVLIKNENRNKLTSIYSGPYIVVRDISPNVEILDNGKIKLIHKNR
FT                 TKLFKN"
XX
SQ   Sequence 5755 BP; 2309 A; 834 C; 1043 G; 1569 T; 0 other;
     tggcgaccct gccagtgcgg ctcactttag gttcgggtta caattactaa tatggatagg        60
     cgccggtaac gatccatatt tagacgagtg tcttttaaca ttaaaacaat aacagtgttc       120
     atctctaaga tgggaaaaca atacagtact cctagacctc cggctgccct tgcaagtcat       180
     agtgatattt ataatcaatt cgggaagacg aactctatcg agcaaaatac gtcgatcacc       240
     cagggaatcg caaatataaa tttctatttg agtatattcg tattgacaat agttctgata       300
     gttgctttcg tacttatacg atactgcatt ttatctgtca ataagaagat tgaaagaaga       360
     gcgcgcagcc aagttataga cttgagcaaa gctggtgttt aaacaaaaac agaagtatgg       420
     aacagcatat gaaggagata gctcagtaca tggaaatatt cagtcaaatt aatgatttaa       480
     ggtgccaagg tatacgaata gggaaaaaac agggaagaac tattgtcgaa gcatttatag       540
     aaggcaggaa aggacattat ctattatgcc cagaacggat aaatagccgg tcattctgct       600
     tgatttctaa ctcactggat gtcgagttgc atgatgggac aactgcagta gcccagctga       660
     cattgcaata cgaaggaaga ctatcctgga tttggaagat tgagtgggaa cgtgattcta       720
     cgtacaatga gtggtagtga gtggtagtgt gtagtgttgt gaacctgtga gcaacgcgac       780
     gatatcagga caataagaga acgttattat gtaagtacgt agtctaatga ttagtttctt       840
     atcctttttg tgtattcata atattaagtg aaataaaatg tgttagttaa atggcagatg       900
     aaatcaaatc acttattgct aagttaaaag aagttagaac ttatttaata aagttaggtc       960
     cgaaaagacg gaaaggcgaa attttactta aaaaagcaga tgaaagttat gtgctatttt      1020
     caactttttc ttctgtccta gcgatcatta gtgaccaagt aaaactaggt aaatcggaca      1080
     aggacacaga gaaaaatatc aacgaattaa gtaaagaatt tttaaagttg tatgaagaag      1140
     tcaaaaaatt gtgtgaggtt gtagaaatgg aaacttttag cttaaagaca gcattaggct      1200
     tattgccgtt aatgacagat gatgaaacag taacccaaca attaattgat aacatagaat      1260
     attatggttc tactttatct gaagctgctt gtaaagtaaa actaataaat tttgtattaa      1320
     agagtaggct gtctcaagca ggtaaattaa aattaaatga atcgtattca actataggcg      1380
     aactgattca ggatatgaaa tgtaaattac ttgcgcaaaa atctgcaaat tcaattcaaa      1440
     caaaattaca acaattaagg caaaatgata aaacgataaa tgactatggc caggaattat      1500
     cgcaattatt tgttgatctt acgatatctc aatcaaaggg cgatgccaac agttataaag      1560
     tgttaaaacc tttaaatgaa aaaatggcta taaaaagatt cgcggatgga ctacggaatc      1620
     gtagactaag caccattatt gcatctagga acttcgattc gctaaaggat gccgtgcaag      1680
     ccgcgttgga tgaagaaata acaacagcaa ctaccgatat aattggtacg tataattcct      1740
     ataaacctcg atttagatac caaggtggct accaacccag aggacacctt agaggacgtt      1800
     acggaagagg atataaacca aattatcagg ataatcgtta taggtcacag ggatattccc      1860
     aacaatacca taacggcgac aggaaaacat tctatagagg aggtatggtt acaagaggag      1920
     ttagtcagca gaaaagaaac cattcaggtg ggtaccacaa tcaccaaagg ggattctaca      1980
     gaagaccaca aaaacatggt gttcacatgc tagcagagga acaagaaact gaacaaaata      2040
     atccctgcga agatagagga ctaagcgaaa atcagttttt tcgggactaa tcatatatta      2100
     attgggggta attcaatcat aattaaacta aaaacaaata accaagattg gtcatggtta      2160
     attgacacag gtgcaactat ttcagctgta aaatacagtt atattagaga aagaaatatt      2220
     ccaataacga aagctagaat gaatattaaa ggcattggag gtagtttaga gtctattgga      2280
     tttactaagt tgaaaattct aataggaaat gaattaatag agcaagtagt gtatgtgttc      2340
     agttcattac catgccctac ggctggaatt ttaggtcata attttttaaa taaacataaa      2400
     gcacaaataa attatagaaa caaatctata accctgtcaa taaatcaaaa taagacaata      2460
     accttacaat atggtaatac attggtacaa acatgttaca attttaaaaa acgatcagaa      2520
     tcaattaatt acattcaaac tgatcgagta aatgactgtg tcatatgtgc agaagaaata      2580
     accaaaggag tattcatagc aagcactatt gtaaaaccta taaatggtag gataccagtt      2640
     caagttttaa acacaaacga agaagacata acaataagtg gactaaagcc gaaattgcgt      2700
     gatcttgatg aatatgacta ttgttacttt ggtgaaagta ttaaaaatgc agaaagagta      2760
     aagaatttat taggacagct taatttaaaa catttgacgt tagaagaaca agtagagatt      2820
     gaaaagattt gtgcgagata tgctgatata ttccaactgc caggggataa attatcagta      2880
     actaaattat ataaacataa tattcagcta aaaccaaatg tagatccagt ttttgttaaa      2940
     aactacagga taccacattc gcagaaaaaa gaaattgata aacaaataga ccaaatgttg      3000
     aaggatggaa taatagaacc aacacaaagt gaatggtcta gtccaatttt attagtgccc      3060
     aaaaaatcaa tcgtatcagg ggagaaaaaa tggagacttg taattgatta tagaaaactt      3120
     aacgaacgaa ttaaagatga cacatttccc cttccaaata taacagagat attagattca      3180
     ttgtcaggtt cagtatattt cagtcattta gatttatttt ccggttatta tcaacaagaa      3240
     ttagaaccag attccagaaa atatacagct tttaattctg gacaatacca aatgacacgt      3300
     atgccaatgg ggctaaagac gagtccaagt gcatttagca gaatgataac gttggcaatg      3360
     tctggtctaa catatgaaaa atgttttgtc tatttagatg acatagtaat ttttggaaga      3420
     agcttggaaa ttcataataa aaacctttta aatgtttttg agagattaca acaggtaaat      3480
     cttaaactaa acccattaaa gtgtgaattc cttaagaaag aagtgttgta tttaggccac      3540
     gtagtttcag cagacggaat tttacctgat ccagaaaaaa ttaaatcaat aaaagaatac      3600
     ccaactccat caaacgaaaa agaagtaaaa agttttgtag cccttgcaaa ctattataga      3660
     aaatttatac caaattttgc agaaaaggca tttcatttaa acaaattagg aaaaaaagat      3720
     gttaaattta aatgggatga taattgccag cggtcattcc aagaattgaa aaatgctata      3780
     ataacaccgc ccgtattgca atatcctgac tttagcaaag aaaatgaatt tattttgcat      3840
     acagatgcct caggctacgc gataggtgcc gttctatcta acagtaatgg gaagcctgta      3900
     gcttatgcaa gcagaagtct aaataaagca gagagtaact acgccactat agaaaaggaa      3960
     ctattggcaa tcgtttgggc aacaaaacat tttcgtccat atttatatgg tagacatttt      4020
     aaaataaaaa cagatcacaa gccgttgata tatctattta acatgaagga tccatcaagt      4080
     cgactactta agtttagatt agcattagaa gaatatcact ttacagtcga atacattaag      4140
     ggtaaagaaa acactgcagc tgacgcctta tctcgaatta aaataacatc taaagagtta      4200
     aaagaaatga atgaatgttt atatgtcatt accagaaaaa tggctaatcg acaaatgaca      4260
     agtaacaatg ataatgaact aattaatagt gattctactg acaaagggac tgatcaacct      4320
     agagtggtag aactcacaac aataccaaaa gaaggagtag aattgcaatt cattaaagga      4380
     aatgagctca ataaagtaaa tataaatgac aaaactaata taaaagagtc aaaaacatta      4440
     atatatttaa agaaagaaaa aacgttatat ataaaactag tatcaccatc gcaaatgacg      4500
     cgacgcgcct ttgtgcgtga actaggtata aaatgcaaag aatggaatat aaataagata      4560
     acagtgagga aaaataaaaa taataatgta tttgtaaaaa cccttgcaaa tgaaatacaa      4620
     aaaacaaaag aagggagtat tccaagtttg tgtataataa atgatgtaat aaaaataact      4680
     aataaagatg aaaaaaaagt gatattaaat gattttcata tattgcctac aagtggccat      4740
     gctggggaac ggaaaatgta taacaatata aaaagaagat atttttggtc aggtttagaa      4800
     gaagatataa agaattatgt acaaaagtgt gagaaatgtc agaaagaaaa atattcaaga      4860
     tatactaagg aaccaatgac aataacaaca acagctacag aggcatttca aaaaatattt      4920
     atggacgtcg ttggaccatt agaaagagat gaagaaaatt tttcatacat acttactata      4980
     caatgtgaat taacaaaata tattgaagct tatcctatga aaacaaaaag taccaaagag      5040
     gttgcagaaa agtttgttaa taacttcatt cttcggtttg ggatacctga aatcattgct      5100
     acagatagag gaacagaatt tatatctaca acattccaag aggtatgtaa cttactgcat      5160
     ataaataaac ttacatccac agcttatcat catcaaagta ttggcgcact ggaaaacagc      5220
     cacaaaagcc taggtactta tttacgtatt caaactgata atcatagtgg acattggagt      5280
     aaatggatag cgtattggtg ctttgcatat aatacgtctg tccatacaga aactaaattt      5340
     acaccattcg aattagtatt cggaaaacaa gccaacttgc caagtaattt aacaattcat      5400
     ccagaaccaa tttacaatca tgaaagttac cctttggaat tgaagtatag acttcagttg      5460
     tcacaaacag aagcaagaga aaacttaata aaaagtaaaa tgattagaaa aataaaatat      5520
     gataagaatt gtaatccggt agtgtataaa cctaatgata aagtattaat taagaatgaa      5580
     aataggaata aattgaccag catatattca ggtccttata tagttgtaag agatatatcc      5640
     ccaaatgtag aaatcttaga taatggaaaa ataaaattaa tacataaaaa tagaacaaaa      5700
     ctgttcaaaa attaaaacct aataatattt tttttttttc tatgaaaggg gaagg           5755
//
ID   Gypsy-12_SpEx-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-320
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4141-4141 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 320 BP; 117 A; 55 C; 46 G; 102 T; 0 other;
     tgtaataggt ataagtaata ggtataagat aacaatagtt ctaagaataa tatatattaa        60
     tattgtaaca tgatcctaat atgatatagt tctatatttg gtaattgagg ttgtaatagt       120
     atctaagtat aaacaattga acctgaagcc taacctacat accgtagggg gcaacaacct       180
     atgacatcat ctatgtaccc gtactatgac atcatccctg taaaccctaa tcactataaa       240
     aggggtccat taataaaaat aaagttagtc ttataaccaa cttcttgtgt ttaattactt       300
     cctcgcgtac cgctatcaca                                                   320
//
ID   Gypsy-12_SpFr-I repbase;    DNA;    INV; 4268 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4268
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1849-1849 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..4182
FT                 /product="Gypsy-12_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSIGKIKEFDMRSGLWTSYMDRLEMYFKVNKVSDEMK
FT                 LPTMIASMGDEAYELLVNLASPNKPSELSFVQAGDLMQQHLQPPPSSLAER
FT                 YRFRQKRQGATEDVATYVAELKKLSRNCKFNTNLNENLRDQFICGLRSDVI
FT                 RQRLFAENDTINFAEAVKLACSLEAAERDAAVVEGKGASEARSTCSVHALE
FT                 KCAGRVGQGRGRRVGGAGPVAPTARGRTRPVNVRMTGSAGSVNAGCAACGA
FT                 ANHDFDRCRYRNFVCSKCQNVGHLRRVCPEWKGRRSQENNDGQEKAIRRGF
FT                 HFGDLDYGTSDEEGVIEDLNLMALNNYKAVSLPILIDNIPIVMEIDTGTAI
FT                 SCINKNVYDLYFDHLPIKNDNTILKFYDGSKIKPLGIIKPSVCYDAIEKQL
FT                 ELFVIENGTTSLIGRQWLAELQIDIPKFQCNFIRKDDKQIDIVLCKLLDRY
FT                 KELFSGGLGRYRGGKATLRVREGAEPVFHRARPLPYALRERVDAELDAMLR
FT                 AGVIEPVDCSDWASPLVPVNKADGTLRICADYKSTLNPVLLVDRYPLPRID
FT                 DVLVGLNGAQYLSKIDLSNAYNQIVLDDSKKFTVINTHRGLFRYNRLVFGL
FT                 ASSVGIFQRIMTNLLQGIPHVQAFLDDIIIGGQTRTEHLQALEAVLKRLAD
FT                 NGLKLRKDKCVFLVDNVKYLGYVISKDGIKADTSKIDAILKIEAPTNVTEL
FT                 RSFLGMINFYARFTRNLSSLLAPLHSLLRKEIPWKWDSECERAFGEVKRAL
FT                 VSSEVLAHYDPRKPVIVTCDASARGIGGVLAQRGVRGERPVAYASRALTAA
FT                 EKNYSQIHREALAIIFCVKKFHQYLYGRKFTLRTDHKPLVSIFGPNAGIPT
FT                 MTASRMQRWAVILSAYDYDIEYIKTNENCADGLSRLPINTTKQESDVIPEQ
FT                 TYLHFAQEALLLDNKQIKTFTLKDAILSRVLSFIRDGWPEVCSIVGMQPYF
FT                 NRKSELYEELGCVMWGHRVVIPDGCRDKVLKLIHEPHMGIVKSKAIARSYV
FT                 WWPGIDEAVERECRACATCAQHADAPPSASPRLWPWPHRPWTRLHLDFMGP
FT                 IGGRLYLVVVDSMSKWLEVFLVPNTSARSTISKLSELWSRFGVPRQIVTDN
FT                 GPPFTSSEFATSLQGDGVEHVFTAPYHPASNGAAENAVRTLKKVIKKAIAE
FT                 NKNIELTLNNFLLHYRNTEHCSTGESPAILLMGRRLRTRLDALKPDREGKV
FT                 RESQQRQVRGKGGESREVGVGDDVWYRQYLKAEKWQPGSVIKSTGTNDYKI
FT                 LDDKGNVHHRHLDQLKRRTRSSLVVPTGTRPSSVDPQTLEPDIQAEIPSER
FT                 TVVRGEQLGEPGGKIGTNTESVEDLGMPISEDFTTPPTTPVPTQPRPVRSC
FT                 RVGKTINYKYS"
XX
SQ   Sequence 4268 BP; 1191 A; 823 C; 1157 G; 1097 T; 0 other;
     gtggcgacga ggacaattag ttacggtttt gcgtgcgcat tcaatctaca gtgtgtcaca        60
     atgtcgattg gtaaaatcaa agagttcgac atgcggtcgg ggttatggac gtcttatatg       120
     gacagacttg agatgtactt caaggtgaac aaggtctcgg acgaaatgaa gttaccgacg       180
     atgattgcta gtatggggga tgaagcttac gagttgctgg ttaatctcgc tagtccaaac       240
     aagccttcgg aattatcttt cgtacaagct ggtgatttga tgcaacaaca cttacaaccg       300
     ccgccatctt cgttagcgga aagataccga tttcgacaga aacggcaagg tgctacggag       360
     gatgtggcca catacgtagc ggaactgaag aaattgtcgc ggaattgtaa gttcaacacc       420
     aatttgaacg aaaacttacg cgaccaattt atctgcgggc tgcgcagtga cgtcattcgg       480
     cagcggttat tcgctgaaaa tgacaccata aattttgcgg aggcggtcaa gttggcgtgt       540
     tcgttagaag cagcggagag ggacgcagct gtggttgagg ggaaaggagc atcagaggcg       600
     aggagtacgt gctcggtcca tgcgctagaa aagtgcgcgg ggcgtgtcgg acaaggacgc       660
     gggcgcagag ttggcggagc gggaccggta gcaccgacag ctagaggccg cacgcggccg       720
     gtcaatgtca ggatgacggg ctcagccggg tcggtgaacg caggctgcgc agcatgcggg       780
     gcggcgaatc acgattttga caggtgccgc tatcggaact ttgtgtgcag caaatgtcaa       840
     aatgtgggtc acttgcggcg ggtgtgtcct gagtggaaag gtcgaaggtc gcaggaaaac       900
     aatgacggtc aagaaaaagc gattaggcgc ggatttcatt tcggagatct cgactacggg       960
     accagtgatg aagaaggggt tatcgaagat ctaaatctca tggcattaaa taattataag      1020
     gcggtgagtt tacccattct tatagataac attccaattg taatggagat agacactggc      1080
     acagccattt cgtgtataaa taaaaatgta tatgatttgt attttgacca tttgcctatt      1140
     aaaaatgata atactatcct aaaattttat gatggctcga aaataaagcc cttgggtata      1200
     attaaaccgt cagtgtgtta tgatgccata gaaaaacaat tagaattatt tgtcattgag      1260
     aatggtacca catctttgat tgggagacag tggttggcag aattacaaat agatattcca      1320
     aagtttcagt gtaattttat caggaaggat gacaaacaaa ttgatattgt gttgtgtaaa      1380
     ttacttgaca ggtataaaga actgttcagt ggagggctgg gacggtacag ggggggcaag      1440
     gcaacactgc gggtgcgtga gggcgcggaa cccgtatttc accgagcacg gcccctgccg      1500
     tatgcactcc gtgagcgcgt cgacgctgag ctcgatgcga tgctgcgcgc cggcgtcatc      1560
     gagccggtgg actgctcgga ctgggcttct ccactggtgc ctgttaataa ggctgacggt      1620
     acgttacgta tttgtgcgga ctacaagtct actttaaacc ccgttttgct ggtcgatcgt      1680
     tacccacttc ctagaattga tgatgttttg gtagggttaa atggagctca atatttaagc      1740
     aaaatagatt tatctaatgc ttacaatcag attgtgttgg atgattccaa aaagtttact      1800
     gtcattaaca cacaccgagg gttatttcga tacaataggt tagtatttgg cttagcatct      1860
     agcgtaggaa ttttccaacg cattatgaca aatttattac agggcattcc gcatgtgcaa      1920
     gcgtttcttg atgacatcat cataggaggt cagactagaa cggagcattt acaggccctt      1980
     gaggctgttt tgaagcgttt agctgacaac ggattaaagt taaggaagga taaatgtgtt      2040
     ttcttggtag acaatgttaa atatttgggg tatgtgatat caaaagatgg aattaaagcg      2100
     gatacttcta agattgatgc tattcttaag attgaagctc ctaccaatgt aacagaatta      2160
     cgttcgttcc taggtatgat taacttttac gcaagattta ctagaaatct tagttcctta      2220
     ctagctcctt tgcatagttt actgcggaag gagattccat ggaaatggga cagtgagtgc      2280
     gagcgcgcat tcggagaagt caaaagagcg ttagtcagta gcgaggtgtt agctcactac      2340
     gatcctagga aaccggttat cgtgacgtgt gatgcgagcg cgcggggtat tggaggggta      2400
     ttggcgcagc gcggggtgcg gggcgagcgc ccagtggcgt atgcgtcgcg tgccctcact      2460
     gctgcggaga aaaattattc tcaaatacac cgcgaagctt tagctattat tttctgtgta      2520
     aagaaattcc atcaatattt atacggacga aaatttacat tacgcactga ccataaaccg      2580
     ttggtttcta tctttggccc taatgccggg ataccgacta tgaccgcgag taggatgcag      2640
     aggtgggccg tcattttgtc tgcttatgac tacgatatag aatacattaa aactaacgaa      2700
     aactgtgcgg acggcctatc gcggttgccg atcaatacta ctaaacaaga aagtgacgta      2760
     attccggaac agacatattt acactttgca caagaagcgt tattattgga taataaacaa      2820
     ataaaaacat ttacattgaa ggatgccatt ctgagtaggg ttttatcgtt tatacgggac      2880
     ggttggcccg aagtgtgtag tatagtaggt atgcaacctt attttaatag gaagtcggaa      2940
     ttatacgagg aattaggatg tgttatgtgg gggcataggg ttgtaattcc tgatggttgc      3000
     cgagataaag tgttaaaatt aatacatgag ccgcacatgg ggatagttaa atccaaagcc      3060
     atagcacgta gctacgtgtg gtggcccggc atcgacgagg cggtggagcg cgagtgccgc      3120
     gcgtgcgcca cctgcgccca gcatgcggac gcgcccccca gcgcatcccc acggctctgg      3180
     ccctggcctc accgcccatg gactaggctc catttagatt ttatgggccc catcggaggt      3240
     agattgtatt tggtcgtagt agactccatg tcaaaatggt tagaagtttt tttggttcct      3300
     aatacgtcag ctcgaagtac tatttctaag cttagtgaac tatggagtag gtttggcgtt      3360
     cctaggcaga tagtgacaga taacggtcca ccatttacaa gtagtgaatt tgccacctct      3420
     ttacagggtg acggggtgga acacgtattt acagcccctt atcatcccgc gtcaaatggg      3480
     gcggcggaga acgcagtcag gaccctaaag aaggttatta aaaaggctat agctgagaac      3540
     aaaaatatag aattgacctt gaataatttc ttactacatt accgtaatac cgaacattgt      3600
     tctacgggag aaagtccggc gatattactg atgggcagac gtttaaggac taggttagac      3660
     gcgttgaaac cagataggga aggcaaggtt cgtgagtcgc agcagcggca ggttagaggt      3720
     aaaggtgggg agagtagaga agtaggagta ggtgacgatg tttggtaccg tcagtatcta      3780
     aaggcagaaa aatggcaacc aggatctgtg attaagtcaa caggaactaa tgattataaa      3840
     attcttgacg ataagggtaa cgttcaccat agacatctcg accagctaaa gcgtagaacg      3900
     aggagttcgc ttgtagtccc cacaggtacg agaccgtctt ccgtggaccc tcagactttg      3960
     gagcctgata tccaggcgga gatcccatct gagcggaccg tagttcgagg cgagcagctg      4020
     ggtgagcccg ggggtaagat aggtaccaat acagagtccg ttgaggattt aggcatgcca      4080
     atcagtgagg actttaccac gcctcctacc accccagtac cgacccagcc acgtcccgtt      4140
     cggagttgtc gagtgggtaa aaccataaac tataagtatt cttaagttaa tcataatttg      4200
     ttagatatta agtaggtaat aagttagaga ggggtaattg ttgtaattct taattaagtg      4260
     gggaggga                                                               4268
//
ID   Gypsy-12_SpFr-LTR repbase;    DNA;    INV; 143 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-143
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1866-1866 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 143 BP; 39 A; 24 C; 31 G; 49 T; 0 other;
     tgtagtgtaa gcgcataatc tgtgtacaac atcagttgtc tatgtcagtt gtcaacgtga        60
     attgtcaagg gcagttttaa ttataccgag ctacaaatgg gctgtgtgtt ttattgtgag       120
     cttccccagt actaaatact ata                                               143
//
ID   Gypsy-12_TCa-I repbase;    DNA;    INV; 3726 BP.
XX
AC   chrUn_5;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_TCa_;
KW   Gypsy-12_TCa-LTR; Gypsy-12_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3726
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_5; Positions  417350  421075.
XX
CC   Positions [1802-2308] - Reverse transcriptase
CC   'AATC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1346
FT                 /product="Gypsy-12_TCa-I_2p"
FT                 /translation="MNGQVDENIHNQDNNEDRDHQDREERPEEGGAGEGVP
FT                 LRIEDIIAVTVRTMQNQRDYSVRQNDIINLIPEFAGTEEEDVLLWLNRIRA
FT                 VRRNYGPNYNELLLAAISKLSGFAKKWFDSRPEHLDLSLAELMEMISTFGN
FT                 REDRLSCMKRFEARKWRRNEKFLEYYQDKLLLGNQLQLSEQEILKYMIDGL
FT                 DNCILQTQAKMARFTSLSEFMKVMNEISGSERQAGANLGGSSGSSRTCGRQ
FT                 FTTQTKASSAVSGGSHRVMLGAHVRCFNCNITGHKATECRRPRREPGTCFE
FT                 CGRGDHRIRDCPVAANKKRTTVQAQADSTTNVIDSVSIAPYTISTHVTTKD
FT                 KYDTICNYHLNCLVDTGSPISLIKSRYVTDINFNESLKNEEFSGINGSKLT
FT                 ILQ"
FT   CDS           1406..3466
FT                 /product="Gypsy-12_TCa-I_1p"
FT                 /translation="MTFSVILGRDFLSFQNLKISFGKTVQIDCVENREQFS
FT                 EQTTFHEILHINIDDDSKEPKFDLNVNPCLPLHIKLKLNEMYEESYRNHSN
FT                 SVGLEPVSDFEMNIALKNDQPIAFRPRRLSFFEKEKLRVILNDLEKDGVIR
FT                 PSKSPYCSPIVLVRKKNGEIRLCVDYRELNKITVRDNYPTPLIDDHLDMLK
FT                 NKRYFSCLDLKNGFHHVRMAPSSIKYTSFVTPLGQYEFLKMPFGLTNAPHV
FT                 FQRYIHEVFSDLINSHKILVYLDDIMIATEDLDEHLSLLREVFDLAATHKL
FT                 EFRLDKCMFLNSETIYLGYLINEKGIRPNPENVKAMVEYPIPRNPKELHRF
FT                 VGLASYFRRFIPQFSIIAKPLYDLLRKNAVFQFDADALNAFETLKSKLISA
FT                 PVLAIYSPSAETELHCDASSYGFGAVLAQRQDSGKFHPIFYFSQRTTDTES
FT                 RYHSFELECLATIYAIRRFHVYLLGIPFKIITDCNSFRLTLSKKDINPRIS
FT                 RWALFLENDNYQVVHRSADKMAHVDALSRCNSILILEENLFEQTLNNTYSR
FT                 SVGNTPSVLLFGVNQTDPYDSLPSYFESQNELDRTIEDIRADAKLKNSKVQ
FT                 ESSKIAYDRKHKPPKQYTIGDFVVIKNIDVTPGTNKKLLPKFRGPYQVKKV
FT                 LGNDRYLVTDVEDFQLTQIPFEGICSPEHMRPWLRDYN"
XX
SQ   Sequence 3726 BP; 1154 A; 641 C; 770 G; 1161 T; 0 other;
     acttcagaag tgggatagaa aagtggattc agtgatgtta gtagtgaagc agaaatacag        60
     tgatatgcta gattttgaat aaccacgagg tgctacgatg gttttgctcg tcgtccattt       120
     ttaattgtga aggaaaaacg aaaaacacct gaaaaatgaa cggacaagtc gacgaaaaca       180
     ttcataacca agacaataac gaagaccgtg accatcagga tcgcgaagaa cgtcccgaag       240
     aaggaggagc gggtgaaggt gtacctttga gaattgaaga catcatagca gttaccgtaa       300
     gaactatgca aaatcagcga gactatagcg tcagacaaaa tgatattatt aaccttatac       360
     ccgagtttgc tggaaccgaa gaagaagatg tgttgttgtg gctaaatcgc attcgtgctg       420
     ttaggaggaa ttatggtccg aattataatg agttattgtt ggctgcgatt agcaaactct       480
     caggatttgc gaagaaatgg ttcgactcga ggccagaaca tttggattta agtcttgccg       540
     aattgatgga aatgatttca acttttggaa acagggaaga cagattgagt tgtatgaaga       600
     gatttgaagc gagaaagtgg agaagaaacg agaaattttt ggaatattac caagacaaac       660
     ttctattggg caatcagttg cagttgagcg aacaagaaat tttgaagtac atgattgatg       720
     gtctggataa ttgcatactc caaacgcagg cgaagatggc aagatttact tctttgtccg       780
     agttcatgaa agtgatgaat gaaatttcgg gtagtgagag acaggcaggt gcaaatttgg       840
     gtggtagctc tggttcctca agaacatgtg gaaggcaatt cacaactcaa acgaaagcgt       900
     catcagcagt cagtggtggc agtcataggg tgatgttggg ggcacatgtg cgttgtttca       960
     attgcaatat tacagggcac aaagctactg aatgccgcag accaagaaga gaaccaggaa      1020
     catgtttcga atgtggacga ggagatcata gaatacgaga ctgtccagtt gcagcaaata      1080
     agaagcgtac caccgtacag gcgcaagcag attccaccac caacgtcatt gactcagtat      1140
     cgatagcgcc ctatactatc tcgacacacg ttacaaccaa agacaagtat gatacaattt      1200
     gtaattacca tttaaattgt cttgttgaca cgggaagccc cattagttta attaagtcta      1260
     ggtatgttac agacattaac tttaacgaat ctcttaagaa tgaggaattc tctggtatta      1320
     acggatccaa attgactatc ctccagtaat tactgtaaat tgcgttgaag ttcctataaa      1380
     attttacgta gtgcctgaca ataccatgac ttttagcgtc atacttggta gagactttct      1440
     ttcctttcag aatttaaaaa tttcattcgg taaaacagtt caaattgatt gtgttgagaa      1500
     tcgtgagcaa ttttctgaac aaacaacttt tcatgaaata ctccatatca atattgacga      1560
     tgactcaaaa gagcctaaat ttgatttgaa tgtcaatcca tgtttaccct tacatattaa      1620
     attgaaactc aatgaaatgt acgaggagag ttacaggaat cattctaatt cggtaggttt      1680
     ggagcctgta tcagattttg aaatgaatat cgcactcaaa aatgaccaac ctattgcgtt      1740
     tcgacctcga cgattatctt tttttgagaa ggagaagctt cgcgtcattt tgaacgacct      1800
     tgagaaagac ggtgtaattc gccctagtaa atcaccttat tgtagcccga tagttctagt      1860
     acgtaaaaag aatggagaaa ttaggctttg cgtggattat cgagaactca ataaaataac      1920
     tgtgcgtgac aactatccta cccctctgat tgatgatcat ttggatatgt tgaaaaataa      1980
     aaggtatttt agttgccttg atttaaaaaa tggttttcat catgtccgca tggctccatc      2040
     ctctataaag tatacatctt ttgttacgcc cttgggccag tacgagtttt tgaagatgcc      2100
     attcggtctt actaatgcgc cacatgtttt tcaaagatat attcatgagg ttttttcgga      2160
     tttgattaat agtcataaga ttcttgtata tcttgacgac ataatgatag caaccgagga      2220
     tttggacgaa catctttcgc ttctgcgtga ggtttttgat cttgctgcta cacataaatt      2280
     ggaatttcgg ttagataaat gcatgttctt gaacagcgag actatttact taggatattt      2340
     aataaacgaa aagggtatcc ggccaaaccc agaaaacgtt aaggcgatgg ttgaatatcc      2400
     aatacctcga aatcctaaag aattacatag gtttgtcgga cttgctagtt attttcggcg      2460
     tttcattcct cagttttcta ttatagctaa acctctatat gacttacttc ggaaaaatgc      2520
     agtctttcaa tttgatgcag acgctttaaa cgcttttgaa actttgaaat ccaaattaat      2580
     ctcggctccc gtattagcta tctattctcc ttcagccgaa acagaattac attgtgatgc      2640
     gagttcttat gggtttggag cagtactcgc ccaacggcag gattcaggaa agtttcatcc      2700
     aattttctat tttagtcaga ggacaaccga taccgaatcg cgttaccata gctttgagtt      2760
     agaatgctta gccacaattt acgctattcg ccgatttcat gtttatcttt tgggtattcc      2820
     ctttaaaatt ataactgact gtaatagttt tcgattaact ttaagtaaaa aggatataaa      2880
     cccccgaatt tcgcgttggg cattgttttt agagaatgat aattaccaag ttgttcatcg      2940
     atccgcagat aaaatggctc atgtggatgc cttaagtcgt tgtaacagta tacttatcct      3000
     ggaagagaac ttgttcgaac aaactttgaa taatacgtac agtcgttcgg taggaaacac      3060
     tccttctgtt ttgctttttg gtgttaatca gactgaccct tatgattctc ttccgtctta      3120
     ttttgaatca cagaatgagt tagacagaac cattgaagat attagagctg atgcgaaact      3180
     taaaaatagt aaggttcaag aatccagtaa gattgcttat gatcggaaac acaaaccccc      3240
     aaagcaatac accattggtg attttgttgt tatcaaaaat attgatgtta ctcctggaac      3300
     gaataagaaa cttttgccaa aattccgagg tccttatcaa gtaaagaaag ttttgggtaa      3360
     tgacaggtat ctagttactg atgttgaaga ttttcagtta actcaaattc cttttgaagg      3420
     catttgtagt cctgagcata tgagaccttg gcttagagac tataattagt cataacatta      3480
     attattgaag tcatttgaga atttctgttc ctttttttgt ttgttttcag attatgcccg      3540
     attatgtcct tgttatgtct tatgttttat gtcgggattt actcttgaat ttctttttga      3600
     ttattgtttt aagatcagtt atgttattat gtgaactctt atggttatta tgtgtacctt      3660
     ttaagttatg agcttattat actgatgcga tgatcgagga cgatcatccc gtcaggacag      3720
     ccgagt                                                                 3726
//
ID   Gypsy-12_TCa-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   chrUn_5;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_TCa_;
KW   Gypsy-12_TCa-I; Gypsy-12_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_5; Positions  417153  417349.
XX
SQ   Sequence 197 BP; 49 A; 37 C; 41 G; 70 T; 0 other;
     tgttgtcgat atttgaaatt ttgattttca cgctttattg ctctgattgc gcgcatgagc        60
     gagttgagat ccgctttacg attgcgcgca tgagtgagtt gagatccgct ttacgttaac       120
     tgctcgcacg ccatgtattc cgtattttat ctaaataaat attgaaaatt cggggagatt       180
     tattaaaatt ccccaca                                                      197
//
ID   Gypsy-12_TrNi-I repbase;    DNA;    INV; 4347 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4347
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 216-216 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..4291
FT                 /product="Gypsy-12_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSVQFGILHSFDHNTQTWKTYKGRIAQYFLANDINK
FT                 NSDPTGDKRKAILLSALTEGTYKLVTDLVLPKDVVDVPYEDLLTRLDDHFT
FT                 PKSVGFGERHNFYAATQQAGETHSQWAARLRGLTAKCNFLNVEEALRDKFI
FT                 MGLQPGREKEKLYTKDLTDLTLAKVVEMAENLSCARAAAVASAGAAASAVA
FT                 PSTPDQLFKIANVGKSGSVAKVKCGVCGYTNHKSADCRFANYVCKKCHVKG
FT                 HLRKMCTKVNYVQVDGGDEGEDDDDGKVYYIRSFRGEPMVETVFIKNVPFK
FT                 FEVDSGSTVTVVSECFYKSYFKDVPLSNTGKQLRTYNGGKIVCVGTMRLPI
FT                 SYADQTHYLVIYVIRDGGPPLLGRDFISLFSLHLIPVNYCTDSDVPIKDLQ
FT                 MQYPRLFSDKLGTFNKYEIKLLLKKDAKPVFCKARPVAFALRDKVEKEINR
FT                 LVDLGILEPVEYSEYASPIVPVLKRNGTVRLCADYSISINKQLLIEQYPLP
FT                 TTSELFSKIHGGQQFSKLDLSMAYNQFVLHNDSKNLTCINTNRGLYRFTRL
FT                 VFGLASAPSIFQRAIESLLSGLDGVLCLLDDILITGRDKQEHVQKLNSVLK
FT                 RLEDAGLTLQKEKCSFFQDKVSYLGYIITKDGLKKAPEKIKAMLEAPVPSN
FT                 INQLQSFLGLINYYRNFVPNASTILSPLYDLLKKGSKWGWTDNHDKAFKTI
FT                 KQVMTSEQVLAHFDPNARIILTVDASPSGLGAVLSQVGLDGVERPISFVSR
FT                 TLNSAEKRYAQIQKEATAIIYGVRRFHQYLYGRSEPFILRTDHKPLLSIFG
FT                 ADRGIPEMSANRLQRYALFLSSYNYKIEYVRSADNSADYLSRASLPRAMHA
FT                 CACTEECKCCDCEVAYDRATYVCFVVDGSMPVTLEKLREETRGDVVLRQVI
FT                 DFISNGWPPKVNDLRLKPYHMCRTQLSFENGCVMRGHKVVIPTSLYQIILK
FT                 ELHASHLGIVKTKAEARSRFWFPGIDQAVETMISSCEVCIQLRPSPPRAPL
FT                 VHWEFPPCPFHRIHIDFLGPIKGCVYLVAVDAHTKWVEVFNMNTATSTAAV
FT                 IVKLCEFMSRFGVPKTIVSDNGTAFCSREFELFCATNGISHMTSPVYHPPS
FT                 NGQAESFVKVVKKGIKSYLMSSHNAKDSSVRLLKYLMDYRNSVHTTTGLSP
FT                 AQLVFGHKLRSRLDLINPKSSAPSSPSVSDHVKNQQCMQTKQQGKNKEKNF
FT                 EISDIVLYKRFVNKASYTWCKGIILKRIGKVLYLVKDLKNSESYKRHINQL
FT                 RLYKGTRNNNEQEALLNLPGSSGLSSSPPPSPPPTPLPPPSPSSASSGTAV
FT                 PQPELDLPNFSPGSSARGRRAELYEGGTSLLVREDESENCSPQIAENEQRI
FT                 VANDAVVETRERPVDSEDEFHEAETDTQETQHDSQVITTNRSLRKRPVISY
FT                 RKYF"
XX
SQ   Sequence 4347 BP; 1325 A; 849 C; 1022 G; 1151 T; 0 other;
     gtggcgacga gattacctac aattgcaaat aatcaaaatg tctagtgttc aattcgggat        60
     tttacatagt tttgaccaca atacgcagac gtggaaaacg tacaaaggtc gcattgctca       120
     atattttttg gccaatgata tcaacaagaa ttctgatccg acaggcgata agaggaaagc       180
     catcctcctc agcgcactca cagagggtac ctacaaattg gtaacggatt tggtactccc       240
     aaaagatgtg gtagatgtgc cctacgaaga cttgttaaca cgactggacg accattttac       300
     cccgaaaagc gtggggtttg gcgagcgtca caacttttac gcggccactc aacaagcagg       360
     cgaaactcac tcgcagtggg cagcgagact acgaggcctt acggcaaagt gcaactttct       420
     caacgtggaa gaggcgctcc gtgacaagtt tatcatgggg ttgcagccag gacgtgaaaa       480
     agagaagctg tacacgaagg acctcaccga tctcaccttg gccaaggtcg tggagatggc       540
     agagaacctg agctgcgcgc gcgctgccgc cgtggccagc gcaggcgccg cggctagcgc       600
     agtcgcgccg tctacgccgg accagctttt caagattgca aatgttggaa aaagtggtag       660
     tgtagcgaaa gtgaaatgtg gcgtgtgtgg ttatacgaat cacaaatcgg cagactgtag       720
     gttcgcaaat tatgtgtgta aaaagtgtca cgtaaaaggc cacttgcgta aaatgtgcac       780
     taaagtgaat tacgtacagg tggatggcgg tgacgagggt gaggatgacg atgacggtaa       840
     ggtctattat atccgttcat tcaggggaga acccatggta gaaactgttt ttattaaaaa       900
     tgttccattt aaattcgaag ttgatagtgg atctacagta actgtagtgt cggaatgctt       960
     ttacaaaagt tatttcaaag atgtgccatt atcaaatact ggtaaacagc tgaggacgta      1020
     caacgggggc aaaatagtgt gtgtaggtac aatgcggtta ccgataagct acgcggacca      1080
     aacacactat ttggttattt acgtaattcg tgacggaggc cccccgctac ttggtagaga      1140
     ttttatatct ttgttcagct tacatttgat tccggttaat tactgcaccg attcagatgt      1200
     gcccatcaag gatttacaaa tgcaatatcc gaggttattt tcagataaat taggaacttt      1260
     taataaatac gaaatcaaat tattgttaaa aaaagacgct aagccggttt tctgtaaggc      1320
     acgcccggta gcatttgctt tacgagataa ggtcgagaaa gaaatcaata gattggtcga      1380
     tttaggtatt cttgaacctg tagaatattc ggaatatgct tcaccgatag ttccggtttt      1440
     aaaacggaat gggacagtca gattgtgcgc agattactct ataagtataa ataaacaatt      1500
     attaatagaa caatatccac tccccacgac tagcgagtta ttttcaaaaa tccatggagg      1560
     ccagcagttt agtaagctcg atttatcaat ggcttataac caattcgttt tacataacga      1620
     ttctaaaaac ttgacgtgta taaatacgaa ccgtggatta tatagattta cgcgtctagt      1680
     attcgggtta gccagcgcgc cgtccatttt ccaacgcgcg atcgagagct tgctatctgg      1740
     gttggatgga gtgttgtgtc tacttgatga tattttgata acgggtcgtg acaagcagga      1800
     acatgtacaa aaattgaact ccgttttaaa gcgtttagag gacgcgggat tgacattaca      1860
     aaaagaaaaa tgtagttttt tccaggacaa agtcagttat ttaggttata ttattactaa      1920
     ggacgggtta aaaaaagctc ctgaaaaaat taaggccatg ttagaagcac cagtcccctc      1980
     aaatattaat cagttacaat ctttcttggg actgatcaac tactacagga actttgtacc      2040
     aaatgcgtcc actattctca gtcctttata cgatttatta aaaaagggct ctaagtgggg      2100
     atggactgat aatcatgata aggcgtttaa aacaataaaa caagtaatga catcagagca      2160
     agtcctcgca catttcgacc cgaacgcccg gataatatta acggttgacg cttctccgag      2220
     tgggttggga gcagtcctct cacaagtagg cttagacggt gtcgaaagac cgatttcatt      2280
     tgtgtcgcgt accttaaatt cggcggaaaa gcgttacgcg caaatacaaa aggaagcaac      2340
     cgccattatt tacggagtgc gacgatttca tcaatatttg tatggcagat ctgaaccatt      2400
     cattttacga acggatcaca agcccctttt atctattttt ggggctgata ggggaattcc      2460
     agagatgtca gcaaatagat tgcaacgtta cgcgttgttc ttaagtagtt ataactataa      2520
     aatagaatac gtgcgcagcg ctgataatag tgcggactat ttgtcccgcg cgagcctgcc      2580
     gcgagcgatg catgcgtgtg cgtgcaccga ggaatgtaag tgttgcgact gcgaggttgc      2640
     atatgaccgc gcgacttatg tatgttttgt tgtagatgga agcatgcccg tgacattaga      2700
     gaaattgcgc gaggaaacaa ggggtgacgt agtgttaagg caagtgatag actttatttc      2760
     gaatggatgg ccgccgaaag taaacgactt aaggttaaag ccgtatcaca tgtgtagaac      2820
     acagttatct tttgagaatg ggtgcgtaat gagaggtcac aaggtggtta tacctactag      2880
     cttatatcaa ataattctta aagagttaca tgcttcacat ttagggatag ttaaaacaaa      2940
     ggccgaagct agatctagat tttggtttcc gggaatcgat caagctgtag aaacaatgat      3000
     atcttcatgc gaagtatgta ttcagctgcg accttcgcca ccgcgagccc cgctggtcca      3060
     ttgggaattt ccaccatgtc cttttcacag aattcatata gactttcttg gtccgataaa      3120
     aggttgtgtg tatttagtag cggttgacgc gcataccaag tgggtggagg tattcaatat      3180
     gaatacggct acgtctacgg ctgcagtcat agtaaagcta tgcgagttta tgtcacgatt      3240
     tggagttccg aaaacaatag tgagtgataa tggcacagct ttctgttcac gtgaatttga      3300
     actattttgc gcgactaatg gaatttctca catgacttca ccggtgtatc acccaccgag      3360
     taacggccaa gccgaaagtt ttgtcaaagt agtaaaaaaa ggaataaaat catatcttat      3420
     gtcgagccat aacgcgaaag actcatcggt aagattgcta aaatatctga tggattaccg      3480
     taattcagtt cacactacta ctgggttatc ccctgctcag ttggtttttg gtcacaagtt      3540
     aaggtcgcgt ttagacttaa tcaatccgaa gtcatcggct ccctcgtcac cgtctgtatc      3600
     cgatcacgta aaaaatcaac agtgtatgca aactaaacaa caagggaaaa ataaagaaaa      3660
     gaattttgaa ataagtgata ttgtattata taaaagattc gttaacaaag caagttatac      3720
     atggtgtaag ggcatcatat tgaaaagaat aggtaaagtt ttgtatttag taaaagacct      3780
     taaaaactca gaaagttaca aaagacacat aaatcagctg aggctttata aaggaacacg      3840
     taacaataat gaacaagaag cgttgttgaa cttacctggg tcgtctgggc tatcttcatc      3900
     tccgccgccg tcgccgcctc caacaccgct gccgccgccg tcgccttcgt cagcttcttc      3960
     aggaacagct gtaccgcagc ccgagctcga cttaccaaac ttctctccgg gtagctcagc      4020
     cagagggagg agagcagaat tgtacgaagg aggtacctct ttgttagtga gggaagacga      4080
     gtccgagaat tgctcccctc agattgcaga gaacgagcag cgaattgtag cgaatgatgc      4140
     agttgttgaa acaagagaaa gacctgtaga ctccgaggat gagttccacg aagcggaaac      4200
     cgacacccag gagacacaac atgatagcca agtaattacg acaaatagat cgctacgaaa      4260
     acgccccgtg attagttata ggaagtattt ttagtattgc ttaatttaag tttagagttt      4320
     aagtactttt tgtaatagag ggaggga                                          4347
//
ID   Gypsy-12_TrNi-LTR repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-140
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 170-170 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 140 BP; 35 A; 37 C; 24 G; 44 T; 0 other;
     tgttaagtat ctgtgaccgc gtcctttccc gccctctgaa ctgtcatacg aactgtcatc        60
     tgtcaaaccg tatgtgaata aaccagtgcg ttgctaacct gcgattgttt aacttgtacc       120
     tacgaccttt atacataaca                                                   140
//
ID   Gypsy-12_TrVa-I repbase;    DNA;    INV; 4896 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4896
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 257-257 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           249..4625
FT                 /product="Gypsy-12_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQQQFQEFLSVFKQSIDKLQVPPLILNFETFNKQAE
FT                 SFSQYRERFDNYAKLKKIDSDPALLKSTFLNAIGSETYETVKSITAPKKLD
FT                 ELTYVQIANELDKYLSPKPNLLIEQHRFLSRVQGESESIGNYVAALRKYLP
FT                 NCAFSCECGKSIADVFLRAQFIRGLDSSIIREKLLGDASLDFQGAVDKALA
FT                 FESSQLNNQEIKKSLNSIQASSGEVNKVSKYTKFNSKSSYNPRRSNSNSSR
FT                 YYRSQSKSPQRSNGQRHQSSAPRHFSQSSSRPRISLRELGIADLCTKCGRN
FT                 NHFKADCRTNPRSLKCNSCHRYGHVDKVCITTLSQQKRSSIKTVSLNCEAE
FT                 SDSEDFNPTLDLWRISGNQENMNPNPDISKFFATVLIEGKPVKFEVDSGCG
FT                 FTLLPECEFSRLNLQMQPSPTKYQFKTYDAGIVVPLGTVQVKVVFKDVSSI
FT                 ETIFIVPSKFSPILGRAWIRNLCIRLEELDFDSKADANIQTLEPVSNSSIV
FT                 NLFPQIFEQRVGKVPNVKLTLNLRKNTPRYRKHRDVPYAIRDAVDEELDEW
FT                 EKDDIVAPIEKCDWGSPIVPVPKPNGKVRLCIDYKSTVNPLLINNHHPIPK
FT                 IDEVLSELKNSKYYCKLDLFKAYLHFEVDDKSSMIQAISTRKGTYRMKRLG
FT                 LGIKVAPGLFHKAMETILFGLPGVTFYFDDIIVHGKTLAECRANLIKCLKK
FT                 LEENNLHLNLSKCKFFQTKISYLGYIIENGRIYKDPRKVEAIVATRQPKNK
FT                 SEVKQFLGLVTYYSRFIRNASSITHPIRKLLRNTVPFHWSAKCEAAFLKLK
FT                 SIIASDQVLMSFDPSLPVAVACDASPFGVGAVLSHIVDGVERPVLFASRSL
FT                 TPAESNYSQLDREALAIMFALDKFYMYIYGRKFFLMTDNAPLTRIFHQHAH
FT                 LPPMTAARLLRYAAYLSHFDYEIKHRPNHLHTNADYLSRFPVPSTNQNQCN
FT                 QMQLDAELIACHELSLFQIETAGITSIDIAEHTLADPELSQTLASLKNDPK
FT                 DNTNLEYTVQGNILFKGNRIVVPGKLRSKILQELHETHVGMTKMKQLARRY
FT                 VYWPSIDKEIERLVRSCESCLLNQKSPAKAPIHQWEKPIENFDRVHIDYAG
FT                 PHLGHHFLILVDAKSKWPEIEPIKLAPTSETTMKLLQNIFVSHGYPKTMAS
FT                 DNASIFKNPDFAQFCKTRGILQCFTAPGHPATNGLAERYVQTLKSKLAKME
FT                 NEPGSIETKVKRILLQFRATPLEGGLSPGELYLHRRFRIRLDAIFPSRPPK
FT                 CSSKFPVRSLSVGQTVIARKFINNKPTWRRGKILKLFGRLHYLVKLNNGFI
FT                 FKRHINQLRPAPAQEITEEAEAHQKSESNQLPKKKVRFAEEPTIADYSTVN
FT                 QPTVQCPVPVSSEPLLITLSPDQPSTSRSSEVPSQSSIAAKPESLNKNLSS
FT                 KTPSIGRGRARIISNSLQGTSPPVSGKPPSRERQAPRHLQDFILK"
XX
SQ   Sequence 4896 BP; 1563 A; 1087 C; 869 G; 1377 T; 0 other;
     attggcgacg aagattaatc cttttttttt tacttttcgg ccgtgaaaat ctcgtgtgcg        60
     ttcggtcaaa tgcggtaggt tcgcgaagtt tcgcgattga tcaaaagttc gaaatcgaag       120
     tgtcgttctt cacgtgcgtg ctcgcatggt tctcgcatgg agcctatcaa tgctctacag       180
     gttatcaagt cacatgtggt ttcagcacaa tttcagcaca tattggtacg taatcatcag       240
     tcttcatcat ggaccagcaa cagttccaag aattcctaag tgtgttcaag cagtctatag       300
     acaaactcca ggtacccccg ttgattttga attttgaaac tttcaacaaa caggctgaaa       360
     gtttttctca gtatagagag cgattcgata actatgctaa actaaagaaa attgatagtg       420
     atccagcgct tctaaaaagt acattcctca acgctatagg cagcgaaact tatgaaacag       480
     ttaaatcgat aaccgctccc aagaaattgg acgaattaac ctatgtacaa attgctaatg       540
     aattagataa atatttaagc cctaaaccca atctattaat cgaacaacat cgattcttat       600
     caagggttca aggggaatct gagagtatcg gaaattatgt tgcagcccta cgcaaatacc       660
     taccaaactg cgccttttct tgtgaatgcg gaaaatcaat cgctgatgta ttcttacgtg       720
     cccaattcat tcgtggactt gacagttcaa tcattcgtga gaaactttta ggtgatgcct       780
     ccttagattt tcaaggggca gttgataaag cacttgcttt tgagtcgtca caactcaaca       840
     atcaagagat taaaaaatca ctcaactcaa ttcaagcatc ttctggtgaa gtaaataaag       900
     tgtctaagta caccaagttt aactcgaaat catcttataa tcctcgcaga tctaattcaa       960
     attcatccag gtactacagg tcacaatcta aatcgcccca aaggtccaat ggccaacgtc      1020
     atcaatcttc cgctccacgc cacttctctc aaagtagttc tcgtcctcga ataagccttc      1080
     gtgaacttgg tatcgcagat ctttgcacta aatgtggaag aaacaaccat tttaaagccg      1140
     actgtcgcac caatcccaga tccttgaaat gcaattcctg tcaccgctac ggacatgtag      1200
     ataaagtatg cataaccaca ctctctcagc agaaaaggtc cagcatcaaa acagtctcgc      1260
     tcaattgtga agctgaaagc gattcagaag acttcaaccc aaccctcgac ttatggcgta      1320
     tctcaggtaa tcaagaaaat atgaatccta atcccgacat tagtaaattt tttgcaacag      1380
     tgttgataga aggaaaacca gtcaaatttg aagttgactc gggttgcgga tttaccctac      1440
     ttccagaatg tgaattttca agactcaacc ttcaaatgca acctagtcct actaaatacc      1500
     aatttaaaac ctatgatgca ggtatagttg taccgctagg tactgtacaa gtcaaagttg      1560
     tttttaaaga tgtatcatca atcgaaacta tctttatcgt tccatcaaaa ttctcaccca      1620
     tcttaggtag agcatggatc aggaacctat gtatcagatt agaagaattg gattttgaca      1680
     gtaaagcaga tgcgaatatt caaacactgg aacctgtatc gaattcatca atcgttaatc      1740
     tctttcctca aatctttgag cagcgtgtcg ggaaagtgcc aaatgtcaag ttaactctaa      1800
     accttcgcaa aaacacacca cgttacagaa aacaccgaga cgtgccctat gcaattcggg      1860
     atgcagtcga tgaagaactt gacgaatggg aaaaagatga catcgtagca ccaattgaaa      1920
     agtgcgactg ggggtcgccg attgttccgg ttccaaaacc taatggtaag gttagacttt      1980
     gtattgatta taaatccact gtaaatcctc ttcttattaa taatcatcac ccaatcccca      2040
     aaattgatga ggtgttaagt gaattgaaaa actccaagta ctattgtaaa ttagacctct      2100
     ttaaagccta ccttcacttt gaagtcgatg ataaaagcag tatgatccaa gccatctcca      2160
     cccgtaaggg tacatataga atgaaaagac taggcctcgg tataaaagta gctccaggtc      2220
     tttttcataa agcaatggaa acaattttgt ttgggttacc aggtgtaaca ttttatttcg      2280
     atgacattat tgtccatggt aaaacgctag ctgagtgtag agcaaatttg ataaaatgtc      2340
     taaaaaagct tgaagaaaat aaccttcacc taaacttatc caaatgtaaa ttctttcaaa      2400
     ccaaaatatc atacctagga tacattattg aaaatggtcg gatctacaaa gatcctcgta      2460
     aagttgaagc cattgttgcg acccgtcaac ctaaaaataa atcagaggta aagcaatttt      2520
     taggtctcgt tacttattac tccagattca ttcggaatgc atcatccatc actcacccaa      2580
     tcaggaaact gcttcgtaac acagttcctt ttcactggtc agcaaaatgt gaagctgcat      2640
     ttctgaaact taaatcaata attgcaagcg atcaagtcct tatgtcgttt gatccttcac      2700
     taccagttgc agttgcttgc gatgccagcc catttggtgt cggtgcggtt ctatctcaca      2760
     tcgtggatgg ggttgaacga ccagttttat ttgcctctag atctttgaca ccagctgaat      2820
     ccaattacag ccaactagat cgggaagcat tggcaataat gtttgcatta gataaatttt      2880
     acatgtatat ttatggaaga aaatttttcc ttatgacaga caacgctccg ttaacaagaa      2940
     tctttcacca gcatgcccac ctgccaccga tgactgctgc aagattactg agatatgccg      3000
     cctacttatc acattttgat tacgaaatca aacatcggcc aaatcacctg cacactaatg      3060
     ctgattatct ttccagattt ccagttccca gtactaacca aaatcaatgc aaccaaatgc      3120
     aactagatgc cgagctcatc gcctgccatg aattatctct attccaaatt gaaacagctg      3180
     ggattactag cattgacatc gcagaacata ccctagctga tccagagctg tcgcaaaccc      3240
     tagcatcatt gaaaaacgat ccaaaagaca ataccaatct tgagtatacg gtccaaggca      3300
     atattttatt caaaggaaac agaattgttg ttccaggtaa gcttcgctcc aaaattcttc      3360
     aagaattaca tgaaacgcac gttggaatga ccaagatgaa gcaactagcc agacgctacg      3420
     tctattggcc gtcaattgac aaagaaattg agcgactagt tcgttcttgt gaaagctgtt      3480
     tgttgaatca aaaatctcca gcaaaagcac caatccatca gtgggaaaaa ccaattgaaa      3540
     attttgacag agtgcacatc gactatgcag ggcctcatct tggtcatcac ttcctcattc      3600
     tagtcgatgc gaaatctaag tggccagaaa ttgagccaat aaaattagca cccacctccg      3660
     aaactacaat gaaacttctc caaaatatct ttgtctcaca tgggtatcca aaaaccatgg      3720
     cttcagacaa tgcatcaatt tttaaaaacc cagattttgc ccaattctgt aagacccgag      3780
     gtatccttca atgctttaca gcaccaggcc acccggccac aaatggacta gcagagcgct      3840
     acgttcaaac actaaagtca aaactcgcaa agatggaaaa tgaaccgggt tcaattgaaa      3900
     caaaggtaaa acgaatcttg ctacaattta gagcaacccc ccttgaaggc ggtctaagcc      3960
     caggggaatt gtatttgcat cgaagatttc gaattcgtct cgatgcaatt tttccgtctc      4020
     gacctcctaa atgttcgtct aaatttcctg ttcgaagttt gtctgtggga caaactgtca      4080
     ttgctcgaaa gtttataaat aacaaaccaa cttggagaag ggggaaaata cttaagttat      4140
     ttggccgtct acattatcta gttaaactga acaatggatt cattttcaag cgccacatta      4200
     accagttacg gccagcacca gctcaagaaa ttacggaaga agcggaagca catcagaaat      4260
     cagaatccaa tcaactacca aagaagaaag ttcgctttgc agaagaacca actattgctg      4320
     actactcaac agttaaccaa ccaacggttc aatgtccggt gcctgtgtca agcgaaccat      4380
     tgttaatcac gctttctcct gaccaacctt caacctctcg cagttcagaa gttccttcgc      4440
     aatcatccat tgctgctaaa ccagaatctc tgaacaagaa cctctcgtca aagactccaa      4500
     gcataggtag gggtcgagca agaataatct caaattcttt gcagggaacc tcaccccctg      4560
     tgtctggaaa accaccaagc agggagcgtc aagctccgcg ccaccttcaa gactttattt      4620
     tgaaataaaa ttagtattta attaatagtg ccaagtaatt ttgttgcgtt cctaactccc      4680
     acatctcatt actcttaaat cttgatgtta atttttgact ctcgcactct taatgaatta      4740
     ttccgatttt ttttttttta cgaaattatc tactctagtc attgttcatt ttagtgtggg      4800
     agagctgaag taaatgtcaa atacacttgt ttcactttgt tctctttttt gagtaaaatg      4860
     ttaaatactc tttgttctct ttttagtgtg ggagaa                                4896
//
ID   Gypsy-12_TrVa-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-12_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-159
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 316-316 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 159 BP; 36 A; 34 C; 35 G; 54 T; 0 other;
     tgttgtggca ctactgagtt gttaggtggg ggactttagc cctcaccagg cgtcaaccct        60
     gaatgggact tttgttatca ctgattgaat atacgaggct gctgccatat gattacggat       120
     tccttgtctc atcctttatt cctaataatg tccataata                              159
//
ID   Gypsy-130_AA-I repbase;    DNA;    INV; 4230 BP.
XX
AC   supercont1.8;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-130_AA_;
KW   Gypsy-130_AA-LTR; Gypsy-130_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4230
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.8; Positions  429315  433544.
XX
CC   Positions [3384-3722] - Integrase core
CC   'CATAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..3081
FT                 /product="Gypsy-130_AA-I_1p"
FT                 /translation="MTSVEGSSKGENSKSAIPVIVNRGGMIGSIEPYVPGE
FT                 CFGEYKERLELFFELNDVIESKRVAMLITLIGPETYKILKSLVIPAEPKTK
FT                 SFEELVTALTGHFAPTVNVIAERYKFHQCVQASSESIAEYIVAIKARAQSC
FT                 KFDNFLDDALRDRFVAGIQSSGLRAVLLKEKNLTFQSACDLALNYEMAESG
FT                 NTMLQHSSQQYVKRLGFKQSRVKEEKTVPQVSKSDIRKTCHLCGKSHEPKD
FT                 CPARNWECFSCGKKGHTSLVCRSKPKKNVKSVLKKSSRIHEVKQKVADSEE
FT                 EGEFFAMKLIEEEECPDPASVNVVSEVCKPSSSASPVAKMEVLIEEKSVVM
FT                 EVDTGASASVIPLERYLSLFSEIPVQKCSKTFVTLTGDKIQISGQIKVRVR
FT                 LPGSSRAIELELVICECKKPSVSKMPLIGRPWLDSLVPEWRQLFDSGVSRI
FT                 QLLSSKSVDLVSIQKRFPNVLSRSLSDSIVGYEAEIVLKPDAVPIFHKAYT
FT                 VPFGIRERVEHELDRMCREGVIVPVKSSPWASPIVVVPKSDSVRICIDCKV
FT                 TINKFIETEHYPLPRSDDLFASLANFNCFCVIDLSRAYLQLKVSEKSRQYL
FT                 TINTHKGLYQYTRLPFGVSSAPSIFQSVIDRVLQGVPGTKVYLDDIIIGGS
FT                 TLEECKARLSEVLSRLNVHHVKINLEKCKYFEESVDFLGHTISFNTIRPNS
FT                 EKVVAIVNAPVPKSVVELQAYLGLLNYYGRFIPRLSEELRVLYNLLKKGTK
FT                 FNWSPLCQSTFVRSKQLILDHDVLTLYDPDKEIVVCADGSPLGVGAILSHV
FT                 VDGVERPVLFASSTLSPAERNYSQLHREALAIIFAVTRFHKYLYGKSFTLC
FT                 SDSEALKEIFNPTKGTSIVSASRLQRWSVTLSMYKYKFIHRPAREMRHVDA
FT                 LSRLPLPDPTGIDDESIHRLSENCPLDFEKIRDAQKRDQLVQKLVACVHDD
FT                 WPKKSLIVCKFITKSVTTLALKMMLCSTLIGLLFQKASKEVF"
XX
SQ   Sequence 4230 BP; 1289 A; 763 C; 991 G; 1187 T; 0 other;
     gttggcgacg aggtaatcgg tagcgcgtgt tcgtagtttg tgtagtgagt cggtcagtgc        60
     gtctaaagtc aatcacgtgg tcgtgaagtc atgacaagtg tcgaaggaag cagtaaaggt       120
     gaaaattcga aatctgcaat accggtgatc gtaaatcgtg gaggaatgat cggaagcatt       180
     gagccttacg tccctggtga gtgcttcgga gagtacaaag agcgtctcga actatttttc       240
     gagttaaacg atgtgatcga aagcaagcgc gtggctatgc taatcacatt gatcggtccg       300
     gaaacgtaca agattttgaa gtcgttagtg atccccgcgg aacctaaaac gaaaagtttt       360
     gaagaactgg tgaccgcgtt aacaggccat tttgcgccaa cagtgaatgt gattgcagaa       420
     aggtacaagt tccaccagtg tgtgcaagca tcgtcagaat ctatcgcgga gtacattgtc       480
     gcgataaaag cacgtgctca gtcgtgtaag tttgataatt tcctggatga cgctttgcgg       540
     gataggtttg tggctggaat ccaaagttcg ggtttacgag cagttcttct gaaagagaaa       600
     aacctaacgt ttcagtccgc gtgtgattta gccttgaact acgaaatggc tgagtccggc       660
     aacaccatgt tgcagcattc gtcgcagcag tatgtgaaaa ggttaggttt caagcagtca       720
     cgtgttaaag aagaaaaaac ggtaccgcaa gtgagcaaga gtgatatccg gaaaacgtgc       780
     catttgtgtg gaaaatcgca cgaaccaaag gactgtccag cacgtaactg ggagtgtttt       840
     tcgtgcggga agaaaggaca tacgtcgttg gtatgtagat ccaagccgaa gaaaaacgtg       900
     aaaagtgtgc tgaaaaaatc atcgagaatc cacgaggtca agcaaaaagt ggccgatagt       960
     gaagaagaag gagaattttt cgctatgaag ttgattgaag aagaagaatg tccagatcca      1020
     gcgtccgtca acgtagtcag cgaggtctgc aagccgtcaa gcagtgcgag tcctgtagcc      1080
     aagatggagg tgctcataga ggaaaagtcg gtcgtcatgg aggtcgacac tggagctagt      1140
     gcgtcagtca taccactaga aaggtattta tcgctattca gtgaaatccc agtccaaaaa      1200
     tgttcaaaaa cgtttgtaac gctaacagga gataagattc agataagtgg tcagattaag      1260
     gttagggtta ggctaccagg aagttcacgt gctattgagt tagaacttgt catttgcgag      1320
     tgtaaaaagc cgtctgtatc gaaaatgcca ttgattggtc gtccttggct cgatagtttg      1380
     gtccccgagt ggaggcaatt gttcgattct ggtgtgtcac gaatccagtt gttgagcagt      1440
     aagtctgtcg atttggttag catccaaaaa cgattcccaa atgtgctttc tcgtagtcta      1500
     tctgatagta tcgttggtta tgaggcggaa atagtgctaa aaccagatgc cgtcccaata      1560
     ttccacaaag cgtatacggt cccttttgga attagagaaa gagtggaaca tgagctagat      1620
     cgaatgtgtc gtgaaggtgt gatagttccg gtaaagtcta gtccgtgggc ctctccaatt      1680
     gtagtagtgc caaagtccga ttctgttcgt atttgtatcg attgtaaagt cacgatcaat      1740
     aagtttatcg aaaccgaaca ttaccccctt ccgcgcagcg atgatctgtt cgctagtttg      1800
     gcaaatttca attgtttctg tgtgattgat ctctcaagag cctatctaca gctcaaagtg      1860
     tctgagaagt cccgtcagta tttaacgatc aacacacata agggtttgta tcagtatacg      1920
     cgattacctt ttggtgtgtc tagtgcccct tcgatttttc agtccgttat tgatagggtg      1980
     ttgcaaggtg tccctggtac aaaagtttac ctcgacgaca taataattgg tggtagcacc      2040
     ctagaggagt gcaaagctcg actctcggaa gttctaagtc gtttgaatgt ccatcatgtg      2100
     aaaattaatc tcgagaagtg caaatacttc gaggagtctg ttgatttctt aggtcacaca      2160
     atcagcttta acaccattcg tccaaattca gaaaaggtcg tggctattgt gaacgcccca      2220
     gttcctaagt ccgttgtaga gcttcaagca tatttaggat tgttgaatta ctatggcaga      2280
     ttcatcccta gattgtcaga ggaattgcga gtgctgtaca atttgctcaa aaaaggcacc      2340
     aagtttaact ggagtcctct ttgtcagtcc acttttgtga gaagtaaaca gttgatactg      2400
     gatcatgatg tcctaactct gtatgatcca gataaggaaa tagtagtctg tgccgatgga      2460
     agtccgcttg gtgttggtgc aatactatca cacgtcgtag atggtgttga acgtccagtc      2520
     ctatttgcat ctagtaccct ttctccagct gagcgtaatt attctcaatt acatcgagaa      2580
     gcacttgcga taatatttgc agtgactcgt tttcacaaat acttgtacgg aaaaagcttt      2640
     actctttgct cagattctga agccctgaaa gagatattca acccaacaaa aggtacatct      2700
     attgtttctg cgtcaaggtt acagcgttgg tcagtcacat tgtctatgta caagtacaag      2760
     ttcatccatc gtccggcacg agagatgcgc catgttgatg cattatctag attgccgtta      2820
     ccagatccta ctggtattga tgatgagtct atacatcgtc tgtctgaaaa ctgtccactt      2880
     gattttgaaa agattagaga tgcgcaaaag cgtgatcagt tggtccagaa gttagttgcc      2940
     tgcgtacatg atgattggcc caaaaagtcc ctgattgttt gcaagtttat tacaaaatcc      3000
     gtaacaactt tagcattgaa gatgatgctt tgttctacat tgatcggatt gttgttccag      3060
     aaagcctcaa aagaagtgtt ttaactgttg tacatgagcc tcattgcggt atagtgcgta      3120
     tgaaaatgaa tgctaggtcg tatgtgtggt ggaaaaacat caatgatgac attgacaatt      3180
     ttgttgcttc atgtcttact tgtcagcaaa cacaaaactc aaaatgcgcg agagataccg      3240
     ttgagtggcc agagtcggtt agaccgtttc aaagaattca tgtcgatttc tttcattttg      3300
     agaagtttac ttgtttggtc atagtcgatt catattcaaa gttcattgac gtgaaagaaa      3360
     tgaacaaaac taatgctgca taaacaatat gcaagatgag ggaattcttc gcgtattttg      3420
     gtttgcctga tcagattgtg tctgacaacg gtcccccttt tggttccaag gaattcgttg      3480
     agtttggaga gcaaaatggt atcaaaatga ctcgaatacc cccgtaccat ccagagagta      3540
     aaggattggc tgaacgggct gtacagactg tcaaaggagt tttgaaaaag gtatatctgg      3600
     attcatcgaa ctgtcgaaag cttcccctgt ccgaaataat ttgcaagttc ttgatcactt      3660
     acaataatac cccctcaaca gtgacaggga aagctccaaa tgacatgatc tactcatata      3720
     agccaagaac attactaact aaaattaatc caaagcataa tgagaaaata attaatgaaa      3780
     caggttgtaa atcaaaagta atttatgtac aaaaacaaga aaagaagatt aatgacgaaa      3840
     cattcaaaat taatgaaaaa gtaatgtaca gaaatgtgtt aaaaaattat gttaaatgga      3900
     ttcctgcaag agttgtgaag agagtcagtc tttgtacata tttgattaat gtaaatgaca      3960
     atgttaaatt tgtgcacaga aatcagatta ggaagtctag tttagatgac aagttccatc      4020
     ctgaatattt gattcataat aatgatttta ttagaaaaga aacgacaaat gaagatactg      4080
     agctcaagca taaaagaaaa gaagcgaaat tgaattcgcc taaaaaggtc agaagatcaa      4140
     gtcgaattag gaaacggcct ttgagatttg gtttcaaaag ttatatgaaa tattgatagt      4200
     cgaatataag aatcttcaaa agtgggagga                                       4230
//
ID   Gypsy-130_AA-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   supercont1.8;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-130_AA_;
KW   Gypsy-130_AA-I; Gypsy-130_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.8; Positions  429060  429314.
XX
SQ   Sequence 255 BP; 76 A; 53 C; 35 G; 91 T; 0 other;
     tgaaatatat tagatcactc catttagatt ccataattat agcaaataga aattagctat        60
     agatgtcagt gtctcctatc tcctatcttg attgtaaaca attatcttgc tttattcaaa       120
     tgatatccgg tcctactcct atataaggcc tgcacaattt agactaagcc tcttttgtat       180
     ttcgactgta taataaacca cattggtaag tgtatagagc ggtctcgtct ttcattcctc       240
     cgtccataca gatca                                                        255
//
ID   Gypsy-131_AA-I repbase;    DNA;    INV; 3922 BP.
XX
AC   AAGE02027875;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-131_AA_;
KW   Gypsy-131_AA-LTR; Gypsy-131_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3922
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027875; Positions  111491  107570.
XX
CC   Positions [2968-3435] - Integrase core
CC   'GTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1459..3906
FT                 /product="Gypsy-131_AA-I_1p"
FT                 /translation="MPVVEDVFAKLNGGKFFSKLDLKSAYNQLLLDEESKK
FT                 MLAWSTHKGIYYVNRLPFGTKPACAIFQEILEKLLQDCPGSVNFLDDVLVT
FT                 GATISEHLNNLSKVLEKLLDAGFRLNRNKCEFFKERLQFLGHIVDGDGLHK
FT                 DPEKVRAIMDVPRPANVKLLREFLGMVTYYSKFIPNVSAILSPLYRLLKKE
FT                 EKYEWSPECETAFQDIKLKICSDNVLIPYDPALPVVLVTDASGKGIGAALF
FT                 QVCSDGNQRPVTFISRVLKNHEKEYSSLDMEALAVYYAVRRLSNYLLGRNF
FT                 TIWTDHQPLVSLFGRKGIPDMVFGKLQRWAVFLANYDYEIKYIKGVNNKVA
FT                 DFLSRSPVLYHEDDDINDEEVMFLQFIEAETKSLVERKQLIVETRRDPVVS
FT                 RVVNYVKTGWPTNVQDSELKKFFVRRSELIVEEEVLLWGYRIVAPAKLRPF
FT                 LLQELHSTHMGIVKMKSLARNYFWWPNIDKDIEDMGKRCEQCIQCRPELGN
FT                 VPISPWKLCSRPFERVHIDHLFLKNKNFLIITDSYTKWVEAYVVNTLSTKE
FT                 TIEKLEDCFGRFGNCDVLVSDNGRSFTAADFQEFCKEKGIRHLTSAPYSPC
FT                 SNGAAENAVKTFKNALKKMLAESSSRGKSLASTMNRYLQMYRATPHCTTNE
FT                 TPFKLMFGREMRTRFDSLRKDNFVQQTVKIWKHNAKRKDTSFIAGEIAYAR
FT                 DYRDPDRQRWIKTKIMKRKGENLYECYAAEIGTFIRRTHQLLKYEYDDFED
FT                 DRSSVQETIVGNNTTNVQLPDDEYLSAEDEAIEDPSSVQQQRGYYRDDGVY
FT                 VSRSNRMVRAPERF"
XX
SQ   Sequence 3922 BP; 1244 A; 675 C; 937 G; 1066 T; 0 other;
     attggcgacg attggagttt aaacctgcgt taagatggaa ggttactgtc cgccgagatt        60
     tgccttggga gatcaatggg aattgtacca ggaacgtttg gagcaatact ttgtagctgt       120
     tgatacggaa gaggagcgta aatccgctgt actcctaaca tcaatttcgc tcgaggtgta       180
     ccagacggtg aagaatattg tcatcctgcg aaacccaatt ctaagaccta tgatgagctg       240
     tgtgtgttgc ttaaaggaag attttgtcca acggttgtta cgtatcgtga gagagcattg       300
     ttttatagag cccgccaaga cctggaagag agcgtcctgg aatggtatgt gcggttgaag       360
     cgattgtcgt tgaattgcga gttcggagaa catctggatc acacgttgaa agatattttt       420
     gttacgggac ttcgacctgg accaatattt gaaagattat gtgaagaaga agagtctgta       480
     tcattggaga atttgatcaa aatagcatcg aaacgggaag ctgcgctgaa gaaccgagcg       540
     gtattggagg tgaacaagat agttgagaag aaagctaatt atgttccgaa gttgacgaag       600
     aaacctggat ctgcaacttg ctatgcttgt ggtaaaggta atcatgattt tcgcaactgt       660
     caatatcgaa gttacgtttg caagatttgt aaagaaaaag gacatattgc tgttgtttgc       720
     cagaagaaaa ctaaagagaa tttcggaagg aaggagaaaa acgttaatca tttggagatc       780
     aacaacgtgg tctatagcga cccttacttt gtggaagttt ctgtgaatgg acgatgtacg       840
     aagttcgagg tagacactgg atcgccgatt actgttattt cagaagaatt ttatcagtca       900
     cactttaacg aatttgccct gcacccattt cgaggaaaac tagtattcta cactggaggt       960
     gaagccacgc ctaaaggtgc attcgatgcg gtattgaaat atcaaggtcg acaagcgatt      1020
     ggcgaattgg tcgttgttga aggcggaagg aatccgttga ttggaagaga tttcattggt      1080
     gagttactga acattcaatt caacaagatc gatacaaaga agtcagaaaa gtttgatgga      1140
     caactgaaaa gcgttttgga caattatgaa gagttgttcg acgattcgtt agggtgctat      1200
     aagtattcaa aagtgaatct gcaactgaag cccgatgctg ttccaaagtt tgtgaaacca      1260
     aggaaaattc cgatttcttt tcaacccaaa gtcgaagaag aattggagag gttggagaat      1320
     actggaataa tttcaaaagc tgaaaatgct gattggggga cacctttggt tcctgtattg      1380
     aagaaggaca attcgatccg cttgtgtgct gattatcgcg ttacagtgaa tccatttctg      1440
     gaagataaac ggtatccgat gcctgtagtg gaagatgtgt ttgccaaact caatggcggc      1500
     aaattttttt cgaaactgga tttgaaatca gcatacaacc aactactact tgatgaagaa      1560
     tcgaagaaga tgttggcgtg gagtactcat aaaggaattt actatgtgaa cagattgccc      1620
     tttggaacca aaccagcatg cgctattttt caagagattt tggaaaaact gttacaagat      1680
     tgccctggat ctgttaactt tttggacgat gttctagtta ctggagcaac aatcagtgaa      1740
     cacctcaaca atttatcgaa agtattggag aagcttttgg acgctggttt tcggctcaac      1800
     cgaaataaat gtgagttttt caaagaacga ttacaatttc tgggacacat tgtggacggc      1860
     gacggtctcc ataaggatcc ggaaaaggta cgagcaataa tggatgttcc gaggccagca      1920
     aacgtaaaac tgttacgaga atttttggga atggttacgt actactcaaa atttattccg      1980
     aatgtctcag ccattttaag cccactgtac cggctgttga agaaagaaga aaaatatgaa      2040
     tggtcgcctg aatgtgaaac tgctttccag gatatcaagc ttaaaatttg ttcagataat      2100
     gtattaattc cttatgatcc tgctttaccg gtagtactgg taacggacgc ttctggcaaa      2160
     ggtattggtg ctgcgctatt tcaagtttgt tccgatggaa accaaagacc ggtgactttt      2220
     atttcaagag ttctcaaaaa tcatgaaaaa gaatactctt cgttagacat ggaagcattg      2280
     gcagtatact atgcagtacg aagattaagc aattacttac taggaagaaa ttttaccatc      2340
     tggacggatc atcaacccct tgtatcactt tttggacgta aaggcatccc tgacatggtt      2400
     ttcggtaagc ttcagcgatg ggccgttttc ttggccaatt atgattacga gatcaaatac      2460
     atcaaaggag ttaacaataa agtagccgat ttcctgtcgc gatcaccagt attgtaccat      2520
     gaagacgatg atatcaacga tgaagaagtc atgttcctac agtttataga agctgaaacg      2580
     aaatcattag tagaacggaa gcaattgatt gttgaaactc gacgagatcc tgtcgtaagt      2640
     cgtgttgtga actatgtcaa aactggatgg cctaccaatg tgcaagattc tgagttgaaa      2700
     aagttcttcg ttcgtagatc agagctgatt gtggaggaag aagtgctcct gtggggctat      2760
     cggatcgtag cgcctgcaaa acttcggccg tttttactac aagaattgca ctcaacgcac      2820
     atgggaattg tgaaaatgaa atcgttagca agaaattatt tctggtggcc taacatcgat      2880
     aaagacattg aggacatggg taagcgatgc gaacagtgta tccagtgtag accagaattg      2940
     ggaaatgttc caatatctcc atggaagcta tgttctcggc cattcgagcg agtacacatc      3000
     gatcacctgt ttttgaaaaa taagaatttc ctgattataa ccgatagcta tacaaaatgg      3060
     gtagaagcct atgtggtgaa tacattatca acaaaggaaa ctattgagaa gttagaagat      3120
     tgtttcggac gtttcgggaa ttgcgatgtt ttggtgtccg acaatggtag atcgtttact      3180
     gcggcagact ttcaagaatt ttgcaaggag aaaggaatac gacatctcac ttcagcacca      3240
     tacagtccgt gctctaatgg tgcagctgaa aatgcagtga agacattcaa gaatgcactt      3300
     aaaaaaatgc ttgcggaaag ctctagccgt ggtaagtcac ttgcttcaac gatgaaccgt      3360
     tatcttcaaa tgtatcgtgc tacaccacat tgcacaacaa atgagacacc attcaaactt      3420
     atgtttggac gtgagatgag gactagattc gattcgctcc ggaaggacaa ttttgtacaa      3480
     caaacggtta aaatatggaa gcataatgcg aaaaggaagg atacatcttt cattgcgggt      3540
     gagatagcat atgcaagaga ctatcgagat cccgacagac agcgatggat taagacaaaa      3600
     attatgaaac gaaaaggaga aaatctgtac gaatgctatg cagctgaaat tggtacattt      3660
     ataagaagaa ctcatcaact gctgaaatat gaatatgacg atttcgagga cgatagaagt      3720
     agcgttcaag aaacgattgt tggaaataat actaccaatg ttcaactacc agacgacgaa      3780
     tatctatcgg cagaagatga ggctatcgaa gatccaagtt cagttcaaca gcagagagga      3840
     tactatcgag atgatggggt atatgtttct agaagtaacc gaatggtacg tgctccagag      3900
     cggttctaac ttacggagga ga                                               3922
//
ID   Gypsy-131_AA-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   AAGE02027875;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-131_AA_;
KW   Gypsy-131_AA-I; Gypsy-131_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-161
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027875; Positions  107569  107409.
XX
SQ   Sequence 161 BP; 48 A; 27 C; 31 G; 55 T; 0 other;
     tgtgctgtcg cgtgttccaa agcgttgtta acgtggcaag ccaagtatcg ttcgggtagc        60
     aacatcctag taacataagt tgttgatttg caataaactt tattctgtat tttctcgtca       120
     taaaagaaag acgtattatt taatttgtct aatacagaac a                           161
//
ID   Gypsy-132_AA-I repbase;    DNA;    INV; 6847 BP.
XX
AC   AAGE02026533;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-132_AA_;
KW   Gypsy-132_AA-LTR; Gypsy-132_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6847
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026533; Positions   52784   45938.
XX
CC   Positions [3463-3924] - Reverse transcriptase
CC   Positions [4945-5421] - Integrase core
CC   'ACTA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           422..2638
FT                 /product="Gypsy-132_AA-I_2p"
FT                 /translation="MPRLSGEEFCTVYRTLRVDHLTAGELDYELLLRNIAI
FT                 AEDESLCKRRRRLREILKQEKEGHENIMEFDLDPEVDFNYCLKIFQEIRRT
FT                 LEIKDKSSDHCRARLLHLGHRLTVIRNHCSGELASKCHELYQKVIALFSNH
FT                 FGNENSFSTDGDSSTSSGNELPQGAAALRPPPAAPYTGTKPKRMMVKYVTK
FT                 QDFTSAMKEVADLFKGLTTELRELKTELQTRKSTPVCDFDLSDISDPIAES
FT                 ERKGEHITTEVETKSFPRPVTQVTTAISQSIPFPPPQAVQNFTESSRSQAP
FT                 TTLPPIGNNLMFNTTNPFTQDVSGLGQTVDPGRSEPTVTFARPPAAYREFV
FT                 PSTAPMNGSFQISPTWYNNRYNTEVVQYPRWSESEAPPPPQVHNPGLTRSF
FT                 SPVLGCQPSLPVMHSHPNPQRERRTPVFQPRKVIPVSQWKIQKYKADDQGL
FT                 GMNEFLENVNQMALSEHVSEEDLFDSAIHLFDGPALSWYTAMRSQDRLRDW
FT                 SHLIQELKQAFRHPDLDAVLRVKIYQYRQQRHETFQQYYLHMEKMFRSMSQ
FT                 PMTELDKLEVLKMNLRFDYRKLLVGRPIKSLQSLVNLGHDLDAADSSAFAR
FT                 VFGNSKKEACALSSSGKGSPQATRGCPNKNPQAGKFNQYPKNDKNSKAVST
FT                 PKQLKTDNNTNDYQKPKGDQHPPKRGSADPFTKMVKNYRPPPHGECFNCRD
FT                 DHDTGECPLPKRLFCKICAFPGVEYKNCPFCTKKPLRES"
FT   CDS           2875..5799
FT                 /product="Gypsy-132_AA-I_1p"
FT                 /translation="MFNSNIYQRLKNVRFRNPVEPTELVTASGDPLEIAGE
FT                 VLVPYSFQGKTRVIPTLYVPGLAVDCICGIDFWQAYRIRPTVSSFSITKPS
FT                 NIQQSNVEQSVRLTENQKFILEQVKGAFKVASAEKLDTTPLVEHRIILGEE
FT                 AQKLKPVRQYPYPISPKIQAGLFKEIDRLLAKGIIEESNSEWSLNIVPIKK
FT                 SSGDIRLCLDARKLNERTIRDAYPLPHPGRILGRLPRARYLSTIDLTEAFL
FT                 QIPLARGSRKYCAFSVQGKGMFQFTRLPFGLINSPATLARLMNRVLGQGVL
FT                 EPNVFVYLDDIVIVSETFEEHVRLLNDVARRLSAANLSIKLEKSHFCVSEI
FT                 PFLGYVLSSRGLQTNPEKIRPIVEFERPVTVSKLRRFLGMSNYYRRFIADY
FT                 CSITAPLSELLKSQSKNLKWNQDAEEAFQNIKEKLITTPILASANFDHEFI
FT                 IHTDASDQAIAGILTQKIEGREHVIEYFSKKLTTPERSYHATEKEGLAALL
FT                 SIEHFRGYVEGSHFTLVTDSSALTFIMRTKWKTSSRLSRWSLSLQQFDITI
FT                 LHRRGKENVVPDALSRSVLMISQKSDSSWYHTLKDKVEHTPEEYPDFRIQD
FT                 GQLRKYVFSNDPTDHRFDWKIVPSPDARKMIVVNAHDESMHIGVDKTIAKI
FT                 RLKYYWPRLTNDVRTHIQKCTVCKEIKPSNVPTVPLMGSMRVSSQPWQIIA
FT                 LDYIGPLPRTRSGKQYILVIMDLFSKWTQLHAFPSISVSSLKMVLQDHWFF
FT                 RNSVPSILLSDNASTFLSKDFGALLERFGVKHWLTTRYHSQANPVERVNRS
FT                 INTAVRSYAREDQRSWDCKLSEIELVINSTIHASTGYSPFMITRGQEIVVD
FT                 GGDYHRFENDDEQSLEARMVRIKSNSPRIYDLVTKNLRKAHDLSSHNYNLR
FT                 HRKNAKPFNVGDKVYKRNTRQSNASDYYNAKLGSQYLPCTVVAKHGYSSYE
FT                 LMDSTGRNIGVWPANLIKPA"
XX
SQ   Sequence 6847 BP; 2049 A; 1567 C; 1471 G; 1760 T; 0 other;
     tttggcgccc aacgtaaaat tctggaagtt acccagcaag gaaaagtatt cagggaatat        60
     tttttctctc gaggtgtggg ggagttttcg cgaaaatcgc attttctctc aatcaattaa       120
     attcgccctg gttggtcctt atctagcctg ccaaaattag cttgattgcg ctggggaaag       180
     tattgaaaac gtgtcgcggt cgcgggtgct gaagcacaaa ataggctcag tagaatatct       240
     atcagacaga ttatcgaaaa atactaacct gctttgttca tctacggaaa attagctaca       300
     tgtgagtttg aagacttaga aactatcgga gttttcgttc gtcctaaagg tgaatccaat       360
     cgacatacat ccctcccata gttgagttta ttagccaatt gtccagaaga tcattttcaa       420
     aatgccacga ctctcaggag aagaattctg caccgtgtac cgtacgcttc gcgttgacca       480
     cctcacagcg ggtgagttag attacgaact gcttcttcga aacatcgcga tcgccgaaga       540
     tgagtctctt tgtaaacgta gacgccggtt gcgggagatc ctaaaacaag agaaagaagg       600
     ccatgagaat attatggagt tcgatctaga tccggaagtt gattttaact attgcttgaa       660
     gattttccaa gagatcagaa gaacccttga aattaaagac aagagcagcg accattgtag       720
     agctagactt cttcacttag gtcatcgttt gaccgtgatt agaaaccact gtagtggcga       780
     gttagcgtca aaatgccatg agttgtatca aaaggtaata gccttgttct caaaccattt       840
     tgggaatgaa aacagttttt ccaccgacgg tgattcttca acttcaagtg gaaatgaatt       900
     accacaagga gcggctgcgc ttaggccccc tcctgcggca ccttatacgg gaacaaaacc       960
     aaaacgaatg atggtaaaat atgtgactaa gcaagatttt acatccgcca tgaaagaagt      1020
     tgctgatctt ttcaaggggt tgactactga actccgagaa ttgaaaacgg aacttcaaac      1080
     aagaaaatct acaccggttt gtgactttga tctgtcagac atcagcgacc ctatcgctga      1140
     atccgaacgg aaaggtgaac atatcacaac tgaggtggaa actaaatcgt ttccgcgtcc      1200
     cgtaactcag gtaacgactg caatcagtca gagcattcct tttcctcccc ctcaagcggt      1260
     tcagaatttc actgaatcat cacgctcaca agcgccaact acactgcctc ccattgggaa      1320
     taaccttatg ttcaacacca cgaacccttt tacccaagat gtttcagggt tgggtcagac      1380
     agtggatcca ggtcgctctg aaccgacagt gacattcgct agaccaccgg ccgcatatcg      1440
     agagtttgtt ccatcgacgg cgccaatgaa tggatcgttt cagataagtc ctacttggta      1500
     taataatcga tacaatacag aggtagtcca atatccccgg tggtcggagt ccgaagctcc      1560
     cccaccacca caggttcaca accctgggtt aacgcgttca ttctcacctg tccttggatg      1620
     ccaaccatcc cttccggtga tgcacagcca tcccaacccc cagagagaaa gacgcacacc      1680
     cgtcttccag cctcgtaaag ttatccctgt ttcgcagtgg aaaatccaaa aatacaaggc      1740
     agacgaccaa ggactaggaa tgaatgagtt cttggagaat gtgaatcaaa tggctctctc      1800
     tgagcatgtt tcagaagagg atttgtttga ctcagccatc catctatttg acgggccagc      1860
     acttagttgg tacacggcca tgaggagtca agatcggttg agggattgga gccacttgat      1920
     tcaagaacta aaacaagcat tccgacatcc cgatttggat gcggtgctta gagtaaaaat      1980
     ttatcaatac cgacaacagc gacatgaaac gttccagcaa tattatttgc acatggaaaa      2040
     aatgttccgg agcatgagcc aaccaatgac agagttggac aagctagaag ttctcaaaat      2100
     gaaccttagg tttgactacc gaaaattatt ggtaggaaga ccaataaagt cactgcaatc      2160
     actggtaaac ctaggtcatg atctcgatgc agcagactcg tctgcattcg ctagagtttt      2220
     cgggaattcg aaaaaggagg cttgtgccct cagcagcagt ggtaaaggta gtccacaagc      2280
     tacgcgaggg tgtcccaata agaatccgca agctgggaaa tttaatcagt atcctaaaaa      2340
     tgacaaaaat tccaaagcgg tttcaacacc taaacaactc aaaaccgaca acaacaccaa      2400
     tgattaccag aaaccgaaag gagatcagca tccaccaaag cgaggatctg ccgatccgtt      2460
     cactaagatg gtgaaaaact atcgtcctcc cccacatggt gaatgcttta actgtagaga      2520
     cgatcacgac acaggagaat gtcctctgcc aaaacgacta ttctgtaaaa tctgtgcgtt      2580
     cccaggagtg gagtataaaa attgcccgtt ctgtacaaaa aaaccgttaa gagagtccta      2640
     aagccgccgg attctcctca ggcgctcgtt catcagactt tcacggcact cgttgcagac      2700
     ctgggtaagt tttatgagcc ttgttccaat atcgttaggg aagacattcg gctaccgcaa      2760
     gttaataaaa ttactctaac ttctcctgat ggggatgatg accgacctca cgtccactta      2820
     aaaatatttg atgtggccgt gaatgccctt cttgatagcg gaagtcacag aacaatgttc      2880
     aactccaaca tttatcaacg attaaaaaac gtacgatttc ggaacccagt ggaacccacc      2940
     gagttggtca cggctagtgg tgatccattg gaaatagccg gagaagtatt agtaccttat      3000
     tccttccaag gtaaaacccg ggtcataccc acactatatg ttcctggtct agctgttgat      3060
     tgcatatgtg gaattgattt ttggcaagct tatcgcattc gaccgactgt ctcatccttc      3120
     tcgataacaa agccctccaa tatccagcaa tcgaacgtag aacaatccgt cagattgaca      3180
     gaaaatcaaa aatttattct ggaacaagta aaaggagctt tcaaagtagc gtctgctgaa      3240
     aagctagata ccactccact agtcgagcac aggataattc tcggagaaga agctcaaaaa      3300
     ctcaaaccag ttcgacagta cccctacccg atatctccaa agattcaggc cggtctcttc      3360
     aaagaaatag atcgcctatt agctaagggg atcattgagg aatccaactc agaatggtcc      3420
     cttaacatag ttcccattaa gaaaagttca ggagatatac gattatgcct cgacgcccgc      3480
     aaactaaacg agcggacgat ccgtgatgct tatcccctac cacatcctgg gcgcatcctt      3540
     gggcgattac cacgagccag atatcttagc acaatagatc tcacagaagc atttctgcaa      3600
     atcccgttgg ctcggggatc gcgtaagtac tgtgcgttca gcgtccaggg taaggggatg      3660
     ttccagttca ccaggctccc attcggtctc atcaacagtc ccgctacgtt ggctcgtctg      3720
     atgaaccgag tgctcgggca gggtgtactg gaaccaaacg tcttcgtgta cttagacgat      3780
     atagtcattg tctcggagac gtttgaagaa cacgttcgtc tgctcaatga cgttgcgagg      3840
     cgccttagcg cagccaattt atcaattaaa ttggaaaaat cccatttttg tgtatcagaa      3900
     atcccatttc tgggatatgt tctgtcttcc cgaggtttac agacgaaccc ggaaaagatc      3960
     agaccaattg tggagtttga gcgacctgtt acagtgtcga agcttcgccg gttcctcggc      4020
     atgtcgaact actataggcg ttttatcgcc gactattgca gtatcactgc tcccctttca      4080
     gagcttttga aatcccaatc taaaaatctg aaatggaatc aggatgcaga agaagcattc      4140
     caaaatatta aagaaaaact catcactact ccaattttag caagtgctaa tttcgatcat      4200
     gaatttatca tccacacgga tgccagcgac caagctattg cgggaatatt aacccagaaa      4260
     atagagggcc gagagcatgt catagaatac ttttcaaaaa aactgactac acctgagcga      4320
     agctatcacg ccactgagaa agaaggattg gctgcccttc tttcgatcga acattttcgg      4380
     ggctacgttg aaggaagtca cttcacactt gtgacggatt cttcagcatt gactttcata      4440
     atgcggacaa aatggaagac atcatcgcga ttaagccgct ggagcttatc attacaacaa      4500
     tttgacatta ccattctcca ccgccgtggg aaagaaaatg tagtgccaga tgcgttatcc      4560
     agaagcgtac taatgatttc gcagaaatcg gactcctctt ggtaccatac actcaaggat      4620
     aaagtggagc acacccctga agagtatccg gatttccgga ttcaggatgg tcaactaagg      4680
     aaatatgtat tttccaacga tcccaccgat cacaggtttg attggaaaat cgtaccctct      4740
     cccgacgctc ggaaaatgat cgttgtcaac gcccacgatg agtcgatgca tatcggggtg      4800
     gataaaacga tagctaaaat ccgcctaaaa tattactggc ctcgtttaac gaacgatgtg      4860
     cggacacaca tacaaaaatg cacagtttgc aaagaaatca agccgtccaa tgtaccaact      4920
     gttcctttaa tgggaagtat gcgagtttcc agtcaaccct ggcagataat agccttggac      4980
     tatatcggcc ctttgccaag gacacgttct ggaaaacagt acatacttgt catcatggat      5040
     ctgtttagca aatggacgca gctgcatgca tttccaagca tttccgtgtc ttccctcaag      5100
     atggttctgc aggaccattg gttttttagg aactctgtcc cttccatttt gctatcggac      5160
     aatgctagca catttttatc gaaagatttc ggtgctttac tggaaaggtt tggagtgaaa      5220
     cactggctga caaccaggta tcactcccaa gccaatccag tagaacgcgt taatcggtca      5280
     ataaacacgg ccgttcgttc ctatgctagg gaagaccaga gatcctggga ttgcaaatta      5340
     tctgaaattg agctggtaat caactctacc attcatgcct ccacaggtta ttcacctttc      5400
     atgataacaa gggggcagga gatcgtggtg gatgggggag actatcatcg cttcgagaac      5460
     gacgacgaac agtcccttga agctcgaatg gttaggatca aatcaaattc gccacgaatt      5520
     tatgatttag tcacaaaaaa cctccgaaag gcgcatgatc tatcaagtca caactacaat      5580
     ctacgccatc gtaaaaatgc aaaacctttc aatgtaggtg acaaggtata taagcgcaac      5640
     actcgacaat caaacgccag tgactactat aatgcaaaac tggggtctca atatcttccg      5700
     tgcactgtag tggcaaagca cggctattcc tcttatgagt tgatggatag cactggccga      5760
     aatatcggtg tttggccagc aaatttgata aagccagcat gaaacaaaag aaatcttcac      5820
     acaatagtta taacaaccaa tcctaccgtt ttggagatca gcctaaaaag aaagaaacaa      5880
     ctgttatata cttaggtacg acaccacatg tggtgatatc ggatggatac ttaccagctc      5940
     ataaacgctt atcttaggga gttttacgcc gttttccttg gccattggtc ccgtatatag      6000
     gtattttgct cattgtgaag gtccatcgaa gcccatgcgg gtccgaaaat agtcccatcg      6060
     caaatacttt gcgaaaatcg aggcagcata ttagggtaca gaatcaaatc gcgcgcggta      6120
     atcgatctgt gccgatcaaa tgataatggt tcactgaagc cgatgtggaa gccgagcttc      6180
     atttctctcc tcactaatcg tccctctctc gccggataac ttcgccctga aaagccgatc      6240
     ggaagagtag gcaaatagtc gagcagtttt atagcacttt tgaatctcct agacgaatat      6300
     atataagtag gtaactgata cctgggtctt cggaaaagat tcgtcgcgtt agataacccg      6360
     atctgcgaac caaatggtcg aggtgaagag gacttgatca tcatagttag tgccattttg      6420
     atcgtgggca acctaggatc ggtcctcgga aggtagtttt cttcacgtcg cggtcgtcgc      6480
     gtttgtaaat atgtatagat gtatgtataa gcagttcatg tgttcatatg ttactgaaat      6540
     gttccggtac ataagttgtt tttccgttat ttacatagaa tattccgtta gttttgttcc      6600
     tcattatttg catgtagtta acttatatta tacttacaac taagaaaata gtgtatggtc      6660
     aggatctagt aaagaaacga ttctctgaaa ggtaatgttc tacaagagtc ggtcggcgat      6720
     tagatttaaa gtattccata gcacgtatgg acgccccagt aacatcttag ctacaagtaa      6780
     gcaaacagat aattatcgaa aaagaaatat tgtacatatt tctttttctc tccaaccaca      6840
     ggcgagt                                                                6847
//
ID   Gypsy-132_AA-LTR repbase;    DNA;    INV; 1099 BP.
XX
AC   AAGE02026533;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-132_AA_;
KW   Gypsy-132_AA-I; Gypsy-132_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1099
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026533; Positions   45937   44839.
XX
SQ   Sequence 1099 BP; 286 A; 323 C; 269 G; 221 T; 0 other;
     tgtaaccgta aagcggttca ataaacccta gtccaagaga aatgtagata cttgtgcgat        60
     tctcaccatc ttgctagttg tcctagatag gacgtaaagt ttagaaccct atccgcgggt       120
     gaggcaatgg tagcaagcca aattacccct agatggcttg agcgggtgtg gttaccaaca       180
     ggttttggag gaagtggtga ccctgcaaac ggaacatgtg gaaagaggaa tgagcgtgca       240
     aaaaggggca gctggagcct cgaaaaaggg actcggggct cttaagttgt gaccgtggtc       300
     gtgaacagtc gaagaagcct tgtgctaata agttttccga aaaagtgagc tagtgagccg       360
     ttgggacggt ccaactgact acagtgtccc gatcaccacc cctagtggct ggttgaacgc       420
     caaggatcgg taagagtaaa ccggtctcgc ccggaacggt ttcgaatcgt cacggctaac       480
     cgtaaaagag acaagccggt gttcgtcgcg gatccctctc ggaagctgca gcgatccgac       540
     acaccatccg ctaatcgcta aggacgaata gatctgcgga tctccatcct gccagaagga       600
     aactcaccaa tcaacaatag tcaagcgtgc gcatccctgg ttggtcgcac agcaagccat       660
     tggccacgtg cctcatcttc cacttctgcc actcgcctcc aatccaccgc cgccattgct       720
     gagaacccga tatccccatc aaacctcccg ccgtcgagcc acccgccatc aagccacccg       780
     ccgtcaagcc acccccgtcg tccactcgcc accatgccat caacccaaag cctagatctc       840
     gcaacgtaac ctccaaccat caatccgtga gtaataaagt gtctaaattc acttccgaac       900
     tttgaccact agcaaggtcc gaaaacctcc ccataacctc caacgaccct gggactcgag       960
     gaccaaaaga ggccttgtgt gcccgccccg taggttgccg ttggctttag accagcaacc      1020
     tggggtttag gacgttcccc cttctgggtg cgtcgatcat atcctcgagg gctaagaggc      1080
     cgtaccagaa acggtaaca                                                   1099
//
ID   Gypsy-133_AA-I repbase;    DNA;    INV; 4200 BP.
XX
AC   AAGE02025031;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-133_AA_;
KW   Gypsy-133_AA-LTR; Gypsy-133_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4200
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025031; Positions   12003   16202.
XX
CC   Positions [1159-1581] - Reverse transcriptase
CC   Positions [2800-3267] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1069..3669
FT                 /product="Gypsy-133_AA-I_1p"
FT                 /translation="MPPARNVYTHIPIAFKEATKQKLQELLSSGIIEEVTN
FT                 DMDRSFCSSLLVVPKGKNDIRLVIDLRGPNRCIYRTPFKMPTFESIIMELH
FT                 GTKWFSTIDLTSAFHHIELNEDSRHLTNFFAGEGLYRYCRLPFGLTNAPDI
FT                 FQEVLQTIVLAGCKGVVNYLDDVMIFGRTKKEHDENLAKVLECFKNHNVKI
FT                 NEAKCAFGKRSVDFLGFVVSDNGWKIENEKIAAIQNFRTPETVAEVKSFLG
FT                 LINFVEKFIPQRADKTWRLRELAKSKNFFWNQALEDEFEYVRTTAWKTIET
FT                 LGYFKREDRTELYVDASPHGLGAILVQFDEMSKPRVIACASKTLTDTERKY
FT                 PHTQKEALAMVWGIERFSMYLMSMNFTVRTDAESNEFIFGGLHRIGRRAVT
FT                 RAESWALRLQPYNFNVCSIPGEMNVADALSRLVKQTQSAEDFDDGADEKHL
FT                 LHFIDAGAMEICWDEVELCSEEDQELKSVRASIKTNHWNNDLRRYESEAKD
FT                 LTIFGNMVFKNDKIVLPDSLRMKAIHSAHQGHMGVGSTKRILRQHFWWPGM
FT                 SKAVETFIKNCETCLLLSRKNPPVPLVSRELPNGPWEVLQIDFFTDKDFGF
FT                 GEFLVIVDTYSRYLHVIEMRRIDAEATIEALNKIFVLWGQPLILQSDNGPP
FT                 FQSERFVKTWENRGVKIRKSIPLSPQSNGAVERQNEGIKKILAASRLDNSN
FT                 WKAALNDYVHMHNKIRPLTRLGVTPFELLVGWKYRGMFPSLWKNNGESEID
FT                 RENVRELDASSKLASKKNADFRRGAKYSDITVGDKVVLAQFKRVKSDPTFG
FT                 SERFTVIARDGAKLVVKSNRGVVYSRNVADAKRASERCDESNVTKSQGQDI
FT                 LTSAETFITGNIYI"
XX
SQ   Sequence 4200 BP; 1403 A; 750 C; 932 G; 1115 T; 0 other;
     ttccagggtg aatcagcgcg gtaataatcg taatggacga ggaggatatg gaaatgtaag        60
     aggtaattca cgaaaccaac cggtttcgaa ttgctggcga tgtggaagcg ccttccatcg       120
     ggcatcagtg tgcttcgcta ttgacaaaga atgtcgagtt tgtggtagag ttggccacat       180
     tgcgcggacc tgtgtttctc gaggctcatc caatcaggcc agaggagtga aacgctttgc       240
     tgatcatgat gaatcgggtg tcgacaagaa aatcgctgcc attgaggata ccaaaactga       300
     accatgtgac gttaaggtac gagaagacga agatcttgag taaaattcaa ttcctcgtaa       360
     gaaaatcttt ccaattattt cgtttacctt tgttttggaa cttttatatt ggatttaaaa       420
     tactttagtt gtaatgaaca tgtgactgaa ctcgaataaa cttattaata aatgtatact       480
     acattacaga aattgcattt gggatcaatt cagtcaaagg actctgcgaa tctctataca       540
     aatcgtgccc acccacaaaa taagccactt aaatgtggaa tcaccagcga taattatgca       600
     atgattgaag caaaagtagc aggagtaaga ttacagtttc tgatcgattc tggcgctcac       660
     gttaatacca taaccaaaac gatatttgat gaaataatga ccaacaagaa ggcagcgtcc       720
     aagatctttg ctttgcatta ttctactgac aagccgttga aggcatatgc gacaaatggt       780
     cagattaaag taattgcaat ttttttcgct gagcttttca tatcagaaga aagaccagta       840
     atggtagaaa agttttacgt tgtagacgag tcaagagcgc tgttaggctt caatacagca       900
     atcaggtatt gcgttctaga tgttggtctg aatgtcccat tacgcccttg caggatgttg       960
     gcaaaccaag ataacacaga cacaagttgt tacgctcaag agatctcagt cgcagccgaa      1020
     tttcctaagt tcaatattcc agctgtttaa cttaagtacg ataaagaaat gcctccagct      1080
     cgaaacgtgt acacgcatat accgattgcg tttaaagaag ctactaagca gaagcttcaa      1140
     gaattattgt ccagcggcat cattgaagaa gtgactaatg atatggatcg ttcgttttgt      1200
     tcttctctac tggtagtacc aaaaggaaag aacgatatac gtcttgtcat agatcttcga      1260
     ggaccaaatc gttgtatcta ccgtacacca tttaaaatgc ccacctttga gtcaatcatt      1320
     atggagctac atggtactaa gtggttttca acgatagatc tcacgagtgc gttccatcac      1380
     attgaattaa acgaggactc acgtcacctc accaattttt tcgctggaga aggactctac      1440
     agatactgta ggttaccttt tggattgaca aacgcacccg acattttcca agaagtgctt      1500
     caaactatag ttcttgccgg atgcaaaggg gtcgttaatt acttagacga cgtgatgatt      1560
     tttggacgaa caaagaaaga acacgacgaa aatttggcca aagtactgga atgtttcaaa      1620
     aaccacaacg tcaaaatcaa tgaagcgaaa tgtgcattcg gtaaacgttc tgtcgatttt      1680
     cttggattcg tagtatcaga taatggatgg aaaatagaaa atgaaaagat tgcagctata      1740
     caaaacttta gaactccgga aacagtggcc gaggtcaaaa gcttccttgg tctgataaat      1800
     tttgttgaaa aatttattcc acaaagagca gacaaaacat ggaggctacg tgagctagca      1860
     aaatcgaaaa actttttttg gaatcaagcc ttggaagacg agtttgaata tgttcgaaca      1920
     actgcatgga agaccatcga aaccttgggt tactttaaac gcgaagatcg aacagagctt      1980
     tacgtggacg cctcgcccca tggactagga gccatcttag tgcagtttga cgaaatgtcg      2040
     aagccaagag tgattgcttg tgcttccaaa actctgacgg atacagagag aaaatatccc      2100
     catacgcaga aagaagcatt agccatggtg tggggaatcg aaaggttttc catgtacctt      2160
     atgagcatga acttcacggt gagaactgat gccgaatcaa acgagtttat ttttggcgga      2220
     ctacacagga tcggaagaag ggctgtaacc agagcagaat cttgggcgtt gcggctgcag      2280
     ccctataatt tcaatgtatg cagtatacca ggagaaatga atgtggcaga tgcactttca      2340
     agattggtca agcaaacaca atctgccgaa gattttgacg atggagctga cgaaaaacac      2400
     ttgctccact tcattgatgc gggtgccatg gaaatctgct gggatgaagt agagctttgc      2460
     tcagaggaag atcaagaact aaagagcgtc agggcatcaa ttaaaacgaa tcactggaat      2520
     aatgatttga gaaggtatga atctgaggca aaagacctta cgattttcgg aaacatggtg      2580
     tttaaaaatg acaagatcgt acttcctgac tctttgagaa tgaaggcaat tcattcggct      2640
     catcagggtc acatgggagt tgggtctact aagagaatac tacgtcaaca tttttggtgg      2700
     ccaggcatga gtaaagcagt agagacgttc atcaaaaact gcgaaacatg tctcttgtta      2760
     tcgagaaaga atcctccggt acctctggtc agcagagagc ttcccaacgg tccatgggaa      2820
     gttctacaga ttgatttttt caccgataag gatttcggtt tcggagaatt tcttgtgata      2880
     gttgacacat attctcggta tctccatgtt atagaaatgc gacgaattga tgcagaagct      2940
     actatcgaag cgcttaacaa aatattcgtc ctttggggtc aaccattaat acttcaaagt      3000
     gacaatggcc ccccatttca gagcgagaga tttgtgaaga cctgggaaaa ccgaggagtg      3060
     aaaattcgga aatctattcc cttaagtccg caatccaacg gagctgtgga gcgtcagaac      3120
     gaaggtataa agaaaatatt ggctgcgtcg aggctagata atagcaattg gaaagctgcc      3180
     ctgaacgact atgtccatat gcacaataag ataagaccat taactaggct tggggtcaca      3240
     cccttcgagc ttctagtagg ttggaagtat cgaggaatgt ttcctagctt atggaagaac      3300
     aacggtgaat cagaaattga tcgggaaaac gtcagagagc tagatgcatc ttccaagctt      3360
     gctagtaaga agaacgcaga ttttcgaaga ggagccaagt attcagatat tactgttgga      3420
     gacaaggtgg tgttggcaca attcaagcga gtcaaatcgg atccaacatt tgggtcagaa      3480
     agatttactg taatagctag agatggagcc aaactggttg tcaaaagtaa tcgaggtgtt      3540
     gtgtactcga gaaacgtagc ggatgccaaa agggctagcg agcgatgcga tgaatcgaat      3600
     gtaaccaaat cccaaggtca agacattttg acgagtgcgg aaaccttcat aacaggtaat      3660
     atttatatat aaaaacaata ataattatta ttgtttataa ttaatttgaa tgttttatgt      3720
     ttgatcagaa atgccgttac cagattccaa gtatcaaaac catggaagga gtggaagctt      3780
     ggctgtattt gacggtgcaa gtaaaaatgg taagattttt tttaataacg cgttattttt      3840
     tttaaatgaa acatttatta tatacagata aacctaccga cgaagacgaa acagaggaaa      3900
     gacctgacaa cggtgatgca ttaggttcac gcccaagacg caatagaaaa ataccggaca      3960
     agctgaagga catggtttta tataacattt atgattagaa attattggtt attaaaaaaa      4020
     aaatgttatg aaaatgtttt acagaaatgg ataattcaaa cgactcagta ctgaagaaat      4080
     aaaaaaaaaa ttatatatat atcataagat tgataaataa atacataaca ataataaaaa      4140
     aaaactgctc tgaaacagta ttacttcaat aaaagatttg agagtagagg tgaaatgaat      4200
//
ID   Gypsy-133_AA-LTR repbase;    DNA;    INV; 1718 BP.
XX
AC   AAGE02025031;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-133_AA_;
KW   Gypsy-133_AA-I; Gypsy-133_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1718
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025031; Positions   10285   12002.
XX
SQ   Sequence 1718 BP; 580 A; 362 C; 391 G; 385 T; 0 other;
     tgtagagaca ggatgaaata aataaaaaat aataataata ataattataa taataaaaat        60
     aataataata catatataat ataaaacatt ttgatttccg tgtaatcagc caaaagcgta       120
     tcgacaataa accacccaat actaaaattg agcccactgc tatttcattc atgtcaaaag       180
     aatcattccg attggccctc caataggaag cgaggaagaa aaatccacga gtataaatat       240
     gaccctgtct tctgtggaac gatcactttt tcggcgaatg tggtagagtg aagaccacta       300
     gcagcagact agtagcagca gaccagtagc agcagtccag cagaaagaag caagccgcaa       360
     ccaccgttaa agagttcggt tggattgttc cgcttgcagc accgattttg cgacggtctc       420
     atccacctcg cttatcggct tcggacggaa acaagctgca accatcagtg ttggttgttc       480
     cgcttgcatc caccttggaa actctccgga attaccgttg attgtttcta agatggcgga       540
     ccaacagtgg aaaatagaaa atgcgacggg tcgcgacaat ggcgcagcta acgaaccaac       600
     aatccccaag aagtaagtat gaaaaaaaaa actgtttaag caaactctgg tggagataga       660
     cagagttctg cagattaaaa ggggccccgg tagagataga cggggcgccc aatatttcac       720
     gcaaaaaaaa aaaatgaata aatggcatgc tctgatggag aaagacagag ttttgcaatg       780
     ttaggagctc cggtggagat agacggagct tcaataattc ttatttacat gaggtaaagc       840
     aaaatattga caaagggata ttttctctgg ttttatttca gaaaaatctc caaaaagcag       900
     attttgcgtg aattgaaaga ggcggtcgag aagaataatg ttttgcgtga gcaagtgatt       960
     caactaacga ccggtacgga tcagaacccc gaaatcggac agcctagccc cagcgtagcg      1020
     cggcaggatc caatgttgct atcgacgatg aacaactgga cacttagcac cctcagcatt      1080
     ccagagtgta ccccatcaca aggcgaaacc gacatcgaca agcaagcgtt tgaatactgg      1140
     aaagacatcc tagtatcttc tcttcagctg gccaatgctg tcgatgaaca cacaaaattc      1200
     ggcgtattta agataaaatc cggaccgaag ctacgtgaga tcttccaagc cacatcatca      1260
     tctgcaggaa tgcctgatga acagagagaa ccgttttcca acgcaatggc acgactgaat      1320
     gggtatttcg gatccaggaa ttacacactg tcacagcgag ggaaactcat gatgatgggc      1380
     caatcagata ccgaaagcag tattaatttc gttcgtcgtg tagctacggc cgctaagctg      1440
     tgtaattatg agccagatca agaaatggag gccgcggtaa gagttatctc aaaaggtgcg      1500
     aatgatgcga aagtccggaa actagcgtac cgcaactggt caaaacaagg ttccttgaaa      1560
     gaccttattg atcttgtacg cgaccacgaa attgagaaga cgaatgaaga agagtttcaa      1620
     agaacgcgga accgtagtga gaccatgaca ttatcggcgg tttctcaaga tcgcacagag      1680
     ttccgaggac atcgtcaagc attcaactca aactggca                              1718
//
ID   Gypsy-134_AA-I repbase;    DNA;    INV; 7131 BP.
XX
AC   AAGE02019934;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-134_AA_;
KW   Gypsy-134_AA-LTR; Gypsy-134_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7131
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019934; Positions   10968   18098.
XX
CC   Positions [5024-5506] - Integrase core
CC   'GCAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           420..2627
FT                 /product="Gypsy-134_AA-I_2p"
FT                 /translation="MEFFKMNPNHLDESEVNYELTVRNYSIEKSVESRRRD
FT                 LRVVFRDPESEKNVRVTDVMMMEDIRVVPSKLKEIADLLQQGPNPACFSRL
FT                 VHYYQRIRRYSPRTMQQQEELRCLLEMISKISANYFATGLDESVGHPPMAE
FT                 STTQAHPLMNTLTVDPSTISANEDRSNQANGQRVSGSPWLMNWDETEGAHG
FT                 GEIDPSESHLTKVIPALVDDLLNFKRGTPTEAAPRQVETAEAWKSNPWNYA
FT                 VPGGHNGKAQQINPAIGVPEFCLETSAEPNGPQVTNSVLDDLRSHLPRVRP
FT                 NAENSRGRESLQSSGFVHVSEIETYVKKYFDQLIRQGSFQISVPNQTMDNL
FT                 SHQIANVSIYPPVNLGYTAAPDSRGTPTLRGTMPDTSPPLQLSGHAPPTSP
FT                 LVHTADNVPRISRNVAYGEPNLNRTGYSATRPDPAENLGYPQNFTRNSFPL
FT                 TMSGHSRRLPHQQCSIIEKWPKFTGDSNAVPVTDFLRQINILCRSYDITKN
FT                 ELRIHAHLLFKESAYVWFTTYEEKFTSWEILEAYLKMRYDNPNRDRIIREE
FT                 MRARKQRPTELFSAYLTEMEMLAQRMIKKMSESEKFEIIVENMKLSYKRRL
FT                 ALEPIHSIEHLAQLCFKFDALESNLYSGSPQPRPTVHQVTGEDDVVDEQFI
FT                 GDELDEICALKARMGKSFSRANTNPENIGEKAKQAICWNCQRVGHMWKDCD
FT                 KRKTIFCHICGLTDTTAYRCPNKHDFGQKGELPKNE"
FT   CDS           3200..5875
FT                 /product="Gypsy-134_AA-I_1p"
FT                 /translation="MPTIELPERSFESSEGLITEHTLTELERAALYEAVKQ
FT                 LPETREGQLGRTQLIEHRIDLLPDAKPKKVSYYRWSPSVEKVIDAEIQRMK
FT                 DLGVIEECDGPVDFLNPLLPIKKANGKWRICLDSRRLNQCTKKDDFPFPNM
FT                 MGIIQRLPKSKFFSVIDLSESYYQVPLELSARDKTAFRTNKGLFRFVVMPF
FT                 GLTNAPATMARLMSRVLSHDLEPYVYVYLDDIIIVSNSLDEHIRLIKIVTD
FT                 RLKNAGLTINLQKSKFCQKAIKYLGYVLTKEGLSMDVSKIQPVLDYPIPKT
FT                 VKDVRRLLGLAGFYQKFLPNYAEITTPITNLLKKGVKKFAWTEDADIALEK
FT                 LKAALISAPILTNADFTLPFIIETDSSDLAVGAVLVQVQNGERKPIAYYSK
FT                 KLSSTQRRYSATERECLAVLLSIENFKHFIEGSQFIISTDAMSLTFLKTMS
FT                 IESKSARIARWALKLSKYDMLLKYKKGSENIPADALSRAVNQLDVLDPYIS
FT                 QLKLMIEKYPERYSDFQVSDGKVYKHIHHAANAEDPSYRWKYVAPVIERRE
FT                 IIQKTHEEAHLGFVKTLAKVRERHYWPRLAADVKRFCSQCEVCRESKIPNL
FT                 NVQPMCGKPKLCSRPWELISMDFLGPYPRTKRGNVWLLVVSDFFSKFVLIQ
FT                 CLRSATAVATCAFVENTVFNVFGAPRICITDNATVFKSELFQKLLNNYSVT
FT                 HWPLAVYHPSPNPAERVNRVIVTAIRCSLNQERDHRNWDQNVHQIARAIRT
FT                 SVHESTGYTPYFLNFGRNMISNGREYEDLRESEPRKNPTESAEDIKQLHMK
FT                 VQQNLLKAYQKYSHPYNLRANKRHQFHKGDVVYKKMVHLSDKSRNFVGKFA
FT                 NKFEKVRITEVLGTNTYALERLNGQKIAGSYHGSFLKRA"
XX
SQ   Sequence 7131 BP; 2138 A; 1442 C; 1529 G; 2022 T; 0 other;
     ttttggcgcc caacgtgggg ccggaaatag tgtttccgat aagttggcat ttggtatttg        60
     aataagaagt tatattgaat tgcctattct gaactcaatt gtatttttag tcgataaaat       120
     caacctttgg tcattattat tccgcgttta agtaattgaa ttcgtgaaat cgtgtcgttc       180
     ggtaagttag ttcctatatt cggttattta tttcatatat tcggttagtt agttaatata       240
     ttcggttgat aggttcgaaa ttcctattat ttagtttgtg cttttgcttt atcagtattt       300
     ttagtttttt tttcggtttt ggtttggaat tagatttttt ttttcttttc tttgtaaata       360
     ttatttaatg aataagtgct aatctatcca atattgaatt acaaagtggt ttgtttgaca       420
     tggagttttt taaaatgaat cccaatcatt tagatgagag tgaagttaac tatgagctca       480
     cagtacggaa ctattcgatt gaaaaatcgg tagaaagccg tcgaagagat ctcagagtag       540
     tctttcgtga cccggaatcg gagaaaaatg ttcgggtgac agatgtgatg atgatggaag       600
     acatccgtgt agtgccaagc aagttgaagg agatagcgga cctgttacaa caggggccga       660
     atcctgcctg tttctctcgc ttggtccact attatcaacg gattcgtcga tacagtcctc       720
     gtacgatgca gcaacaggaa gaattgcgtt gtttgctgga aatgatttcc aaaatatccg       780
     cgaattactt cgcgactggg ttagatgagt cggtaggaca tccaccgatg gctgagtcca       840
     ccacccaagc ccatccgttg atgaatacgc tgactgtgga tccgtccacg atatcagcta       900
     atgaggatag atcgaatcaa gctaatggac agcgcgtttc cggatcccca tggttgatga       960
     attgggatga aacggaaggc gcccatggcg gtgaaatcga cccttcggag agccatttga      1020
     cgaaagttat accagcgttg gtagatgatc ttttgaattt caagcgaggt acacccactg      1080
     aggcggctcc acgccaggtt gaaactgccg aggcttggaa gtcgaatccg tggaattatg      1140
     cagttccagg agggcataac gggaaggctc agcagatcaa tcctgccatt ggtgttccag      1200
     aattttgcct ggagacgtct gccgaaccca acggacctca ggtgaccaat tctgttttag      1260
     acgacttgcg ttcccacctg ccacgagtcc gtcccaatgc ggagaattct cgtggtcgtg      1320
     agtcccttca aagcagtgga ttcgttcacg tgtctgaaat tgaaacatat gtaaaaaaat      1380
     actttgatca actgattcgt caagggtcgt ttcagatctc agttccaaat cagacaatgg      1440
     acaatctttc gcatcagatt gccaatgtca gcatttatcc tccggtaaac ttggggtata      1500
     ctgctgctcc agattcgaga ggtacgccta ctctccgcgg tactatgcct gacacttcgc      1560
     caccgttgca actgtcagga catgctccac cgacttcgcc attggtacat accgctgaca      1620
     atgtgccaag aatttcgaga aatgtggctt atggtgagcc aaacttgaat cgaacgggat      1680
     attctgcaac tcggccagac ccagctgaaa atcttgggta tccccaaaat ttcacacgaa      1740
     attcgttccc gttaacgatg agtggacatt cgagacgatt gccgcaccaa caatgtagta      1800
     tcattgagaa gtggccgaaa tttacaggcg actccaatgc ggttcctgta acggattttc      1860
     tacgacagat caacattctt tgtagatctt atgatattac caaaaatgaa ttacggatac      1920
     atgcgcattt gcttttcaaa gagagcgctt atgtttggtt tactacttac gaggagaaat      1980
     tcacctcttg ggaaatattg gaagcctact tgaagatgcg gtacgataat cccaatcgtg      2040
     accgtatcat ccgagaagaa atgcgagctc ggaagcaacg acctactgag ttatttagcg      2100
     cgtatctcac tgaaatggag atgcttgcgc agagaatgat taaaaagatg tcggagagcg      2160
     aaaaatttga aatcattgta gaaaacatga agctttctta caagcgtcga cttgccctgg      2220
     aacctattca ctcgatcgag catctagctc aactctgttt caaatttgat gctctcgagt      2280
     caaatttgta ctccggttct ccacaaccac ggccaacggt ccatcaagta acaggcgagg      2340
     atgatgtggt tgatgagcag ttcatcggtg atgagttgga tgagatttgt gcgctgaagg      2400
     ctagaatggg aaagagcttc agcagagcaa acactaaccc cgaaaacata ggtgagaagg      2460
     ccaaacaagc aatttgttgg aattgccaac gggtcggaca catgtggaaa gattgtgata      2520
     agcgtaagac gatcttttgt catatctgcg gtttgacgga caccactgcg tacagatgtc      2580
     cgaacaaaca tgactttggt cagaagggag aattgccaaa aaacgaataa acgaggtcaa      2640
     ttctgggaat ccttgtcctc gtgaaaataa tcaagcgatt cctcttccca gctacagcat      2700
     tttcaacagc atccatcaaa ttaataccaa atttcatcgc tgcccccact tgaaagtgag      2760
     aattctttcc gaagaagtgg aagggttagc cgataccgga gcaagtttat caataatcag      2820
     ctcagtggaa ttaatcaata agttaggctt gaaaatccat ccaatcccaa taaaaatctc      2880
     taccgcagat ggaacagcat atcgatgcct aggttatgcc aacgtgccct tctcatatca      2940
     acaaaagact cacgttattc cgacgataat cgtgccagaa gtaactaagc gtttaattct      3000
     gggagtggat tttttaaaca aattcgggtt tcagctgata cctcccaaca acgatactac      3060
     cgaggaatca cagatagaac tatcatgtgc agaagattac ttcggagatc ggactggtga      3120
     aatatgtttt caaattgagc cctgctctaa ctcaaaattg tctgaaagca tagacgaaac      3180
     ttctgatgag agtttagaga tgccgacaat tgaactacca gaaagatcat ttgaatcttc      3240
     cgaaggtttg attacggaac ataccttaac tgaactcgaa agagcagccc tttatgaagc      3300
     agttaagcag ttaccagaaa ccagagaggg tcagcttggt agaacacaac tgatagaaca      3360
     tcggattgac cttctaccgg acgccaaacc caaaaaggtc tcgtactatc gatggtctcc      3420
     aagtgttgaa aaggttatcg acgccgagat acaaagaatg aaagaccttg gagtcattga      3480
     agagtgtgat gggccagtgg acttcctcaa cccccttcta ccaattaaaa aagcaaatgg      3540
     gaaatggaga atatgccttg actctcggag gctcaaccag tgcactaaaa aggatgactt      3600
     cccattccct aatatgatgg gaatcattca gcgactgccc aaatccaaat ttttctcagt      3660
     aattgacttg tctgaatctt actatcaggt gccactagaa ttatctgcta gagacaagac      3720
     cgcttttcgt acaaataagg gcttatttcg attcgtagtt atgcccttcg ggttaactaa      3780
     cgcccccgcc actatggccc gattgatgtc acgcgtttta agccatgatc tcgagccata      3840
     tgtgtatgta tatcttgacg atattataat cgtttctaat agccttgatg agcatatccg      3900
     cttgattaaa attgtcacag accgacttaa aaatgcaggt cttacaataa atctgcaaaa      3960
     gagcaaattt tgccagaaag caattaagta tttgggatat gtccttacga aggaaggctt      4020
     atcgatggat gtgagtaaaa tacagccagt acttgactat ccaattccca agacagtgaa      4080
     agatgttcgc cgtcttcttg ggctcgcagg gttctatcag aaattcctgc ctaattatgc      4140
     agaaatcacc acgcccataa ccaatcttct aaaaaaggga gttaaaaagt tcgcgtggac      4200
     cgaagatgcg gatattgcac ttgagaaatt gaaagcagcc ttaatctcag ctccaatttt      4260
     gacaaatgct gattttactt taccatttat tatcgagact gatagctcgg acttagcagt      4320
     gggtgccgtg cttgttcaag tccagaacgg tgaaagaaaa cccatagctt actattctaa      4380
     aaagctgtcg agtacgcaga ggcgttacag cgctactgag cgcgagtgtc tcgcggtttt      4440
     attaagcatc gagaatttca agcacttcat cgaaggttcc cagttcatca tctcgacaga      4500
     tgccatgagc ttaacctttt tgaagaccat gtcaattgag agcaaatcag ctagaattgc      4560
     caggtgggct cttaagctct ctaaatatga catgctttta aaatacaaga aaggctcgga      4620
     aaatatccca gccgatgcct tgtcacgagc tgtaaatcaa ctcgatgttt tggatccgta      4680
     catttcgcag ctaaaattaa tgattgaaaa atatccagag aggtattcag acttccaagt      4740
     tagcgatggt aaagtctaca agcatataca ccatgccgca aatgccgaag acccatccta      4800
     ccggtggaaa tatgttgctc cagtaattga gagacgagaa atcattcaga aaacccatga      4860
     agaagcacat cttggattcg tcaaaacctt ggcaaaggtt cgcgagagac attattggcc      4920
     acgcttagca gctgatgtta aacgattttg tagtcagtgt gaagtatgcc gagaatctaa      4980
     aataccgaat ttaaacgtcc aaccaatgtg tggcaaaccg aagctatgtt ctcgtccttg      5040
     ggagttaatc tccatggatt ttttggggcc gtaccctaga actaagagag gcaacgtatg      5100
     gttacttgtc gtaagtgact tcttctccaa gttcgtatta attcaatgtt tgcgaagtgc      5160
     aacagccgta gcgacctgtg catttgtaga aaacaccgta ttcaatgtgt tcggtgcccc      5220
     gcgcatatgc attacagata atgctactgt gttcaagtca gaactcttcc agaagttgct      5280
     caataattat tctgttactc actggccatt ggctgtctat catcctagcc ccaacccagc      5340
     cgaacgcgtt aatagggtaa ttgtcacagc cattcgatgt tccctaaacc aagaacggga      5400
     ccaccgtaat tgggaccaaa acgttcacca aattgctagg gcgatacgta cgagcgtcca      5460
     tgaaagcacg ggatatacgc cttacttttt aaacttcggg cgaaatatga tcagcaacgg      5520
     tcgtgagtac gaagatctaa gagaaagtga accccggaaa aatcctactg aatcggctga      5580
     ggacataaaa cagttgcata tgaaggttca acaaaatttg ctaaaagcct atcaaaaata      5640
     tagtcacccc tacaatctac gggccaataa acgtcaccaa tttcacaagg gagatgtggt      5700
     gtacaaaaag atggtccatt tatccgataa atcacgaaac ttcgttggga aattcgccaa      5760
     caagtttgag aaagtgcgca taaccgaggt tctgggcaca aatacctacg ctctggaacg      5820
     cttgaacggc cagaagatag ctggaagcta tcatggctcg ttcctaaaaa gagcataatg      5880
     accacaagct atgtcggcca tcgatcagat gtgcataaac cagcgtaaat acaaaatact      5940
     caaagaggtc gattcctacg tccaatgttt gagatgtcag ctagtctgtt tcctcacatt      6000
     gtagaccaaa aatgctttat gtcaattctc agctatgtcg gtgcatcata agaatgtgct      6060
     taactagtag aatccgacca aaacactctc agaggtattc aatttggatg tccaatgctc      6120
     gagatgactc ttagtagatt cctcgcattg aaagcaatga gaattctgtc aaacaaacct      6180
     aaaatttcag aaatatcaat cacatttcta ttccgttagt agttgtttta aggtgtgatg      6240
     catcagttgc attcctggcg gttggttgat cgacgaacgt tgaccttgac ctactgcaac      6300
     cccttcaata gcccagattt gtccatcaat agaccggttt tgaagtatta aattcactat      6360
     tttcccaatc tgctaccata aactttgcat acacttaata cttttacctt acttaatcca      6420
     ttttgcctaa attccatgcc aaattagttg aaatagtctt atttttgaag aaattccatc      6480
     gcacgatgca cacattctgt tttgtcgcgt tgttttgatt agattgacgt ttcggtatga      6540
     agaagctttt agaatcgaaa aagctttcgc gcgtacccgg tactgaaata tcggaatagt      6600
     atttggaagc gtcgatcgtc ggttttgttt ttgcgtattt tggctatgtc attttgatcg      6660
     atatgaatga gtagttatga tttcgcggta gctgataata tgctagttta accaaatggt      6720
     tggaaaacaa tatgctcaga tatttctgag gttaattcgg ttatgattag attgaaggtt      6780
     ttatgctcat atatttctga ggttaattcg attatgatta gttttggaga tctgttgctc      6840
     agatatttct gaggttaact cggtataaaa atctcaagag ttttctgagg tttcatttta      6900
     gttgagttcg ttaagtgaga aaaaggttga atgagtttgg atgaatgagt tgagttcata      6960
     atggcatagt taaaatcaga taaatgttct atgtgtagaa gctttagaaa aatataaatt      7020
     atttttgaga aaatcagtaa ctgagtcaat aatattatat aactacatta aagcaataaa      7080
     aattttgaaa ttttatttca aaatttttat tgaaatttgt atgggcgaga a               7131
//
ID   Gypsy-134_AA-LTR repbase;    DNA;    INV; 1833 BP.
XX
AC   AAGE02019934;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-134_AA_;
KW   Gypsy-134_AA-I; Gypsy-134_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1833
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019934; Positions    9135   10967.
XX
SQ   Sequence 1833 BP; 518 A; 364 C; 397 G; 554 T; 0 other;
     tgaaacgatc attccgtacc agtcccattt taaattgttc gtacgttgta atgcctttaa        60
     tatttattct tagcattttg aatcactttt gtttaacgtg ttatcgtgta gtacaagatt       120
     aaaaagcttt tcctaatacg ccacctgtga aaaacaagcg gtaactgtga ttcaaatcgg       180
     tatgaaaaaa atccatagta cctatgaaca tgagggaatc tacattcagg cggtttacat       240
     tgatctgccc gaaactcggt tcaagtggaa aattccataa tttaattgcg cagtagagaa       300
     tatttgaacg gaacagagag ctattttctg tattatcacg atatccaatc aaaaattacg       360
     ttgtacgctc tcagtacacc atcgtgaggg aaattgcgtc ttagttttaa ataatatacc       420
     aatccgaacg cgatcggcca tcatttcaag tggagttctc aaagtgaaca gttcgattcg       480
     aacaagtgaa ttcgagtttc aaataatcga tattggaaaa tatcgtttga atttttatag       540
     ctaaattcga agtaaatccg cgattaaatt taaatcttgt gataaattct aatttgaaat       600
     ttgaattaca gaagatttac ctttttttga gttcgggtag tttttgttgg tgaacaaata       660
     ggcagtagtc cacactgtgc cttagtgtgt gacttgaatc aggtaagctc taatgtgacc       720
     agttgtgaag aagtgagttg ttctaaaata ccacgttgtt taggcatagc ccaacaacga       780
     gggcagtcag ttttgggcgg ttcaaacgga atacctaagc ccgttcctgg tagatcctgg       840
     tcggccttta cgcgatcccg accacgtggc ttcaatccgc attcttcgac cccagattct       900
     gccggttagc tgcctgcacg tgccataaag tgatcgtacc gttccaactt aagtgtccct       960
     actaccgaac tacgaatacc gttcatcgag gcgaaccatt cgaactgctc gaccgttagt      1020
     cgagacacgt gggaattgag cagaagagca tcgaatcacc ttcaagccac actagtgctt      1080
     cgtgtgcccg tgacgtcaag ttgtgcgctt tgagccacgt tctaaggctc aggactccac      1140
     ctttccgggg acatctttac cccgagggct gtcgcacaca cgggacagat tcggtcttcg      1200
     cttagcaagt cggtgaggtc gtcgatcggt gagtagaatc gcatccggct actacgagga      1260
     cgacgtggga ccttggccgg cgtaatcagg tcagaataac ttttatgtgc acgaagaaat      1320
     tgttctctag ctagagagaa agcttaccta aaatagaaaa ctgttcataa gatttgtttc      1380
     cgtgacgtca caagtactga gcataggcgc ctgtcaaata aagcttaata actgcaaatt      1440
     ttaaaaaact tgtgaagctc aaaaaaagtt ttcattaaat tttattgatt tttcgtgaaa      1500
     taaattgttt tcaattaatt acttcaaatt tagttgaact cctttctttc tcgcgcgctt      1560
     gagcttgtga caaattaacg agttggtttt attttagccg agacacactt cctgatcggt      1620
     tgtgtaggag gcgtattgcg ttggtgagtt tggaacgtga ttgaattggc tttagttggt      1680
     tcgttcaaat tagtaaagtt tgtatactgg aataactata acctgccttg agtagaggaa      1740
     tctcatgccg ggatttgatc acagtcttcg gtccttctaa tttggaaggt ggcgcttaag      1800
     ccgtagactg ccgtaacagg gacaaacgtt aca                                   1833
//
ID   Gypsy-135_AA-I repbase;    DNA;    INV; 4970 BP.
XX
AC   AAGE02025177;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-135_AA_;
KW   Gypsy-135_AA-LTR; Gypsy-135_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4970
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025177; Positions   34575   39544.
XX
CC   Positions [3817-4287] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           716..2713
FT                 /product="Gypsy-135_AA-I_2p"
FT                 /translation="MSTFIGSVEPYVVGTSFSDYAERLQHVFNYNRVPEGN
FT                 RKSLFITVSGAAVFSEMKKLYPGVDLDTLEYNDIINKLKGRFDKTDGRMVQ
FT                 KALFYERCQRKDELAEDFILDVKLLAESCGFGAMKDSIIRDRLVLGAYDKK
FT                 TRERLLEEEEPSLVETERILIAREQMARSSLRMEQTSDRVSAIERSTTRDR
FT                 RDDHTRRNWDHRNGRREVYPHSSRRGQDRYNYRSRSRSRSAHRWKTNNNNN
FT                 VMCSYCKIRGHVRKNCFKLQRSRESIRFVEDENSTEQSSAFDFKRLGPPNP
FT                 TEEDSEEDLDCMSIEAAAQVNEPVFINAKINGLGFDMEIDTGSAVAVVGEQ
FT                 IYKSHFSKLPLKKCKRRLSVVDGARLKVSGILDVTVSIRNMIANVTLVILQ
FT                 GSTNFVPLVGRDWLDVFFKGWRTKFLNLSSINNVNVMDKTIDIIDKIKQKY
FT                 NSVFSKDLSVPIEGFEGELTMRECAPIFRKAYTVPLRLKEKVIQHLDSLEE
FT                 SGIITPIQASDWASPVVAIVKKDNDIRLVIDCKVSINKFIVPNTYPLPLAQ
FT                 DIFATLAGCKVFCSLDLAGAYTQLQLSERSRKYMTINTIKGLYTYNRLPQG
FT                 AASSAAIFQKVMDQVLHDIEGVSCYLDDVLIAGKNFEECKNKLLLVLDRLD
FT                 KAKIKVKWNKCKFFWDM"
FT   CDS           2683..4815
FT                 /product="Gypsy-135_AA-I_1p"
FT                 /translation="MEQMQIFLGHVITENGLSPSPDKIDTIANAKAPNNPT
FT                 ELKAFLGLINFYGKFVPNLSSKLICFYNLLKKDAKFIWDSKCNENFEICKK
FT                 YLLKPNVLEFFDPKKPLIVVTDACGYGLGGVLAHEINGQEKPISFTSFTLN
FT                 DAQRKYPILHLEALAVVSCVKKFHRYLYGQHFVIYTDHKPLLGVFGKETKD
FT                 AISVTRLQRYIMELSIYSYEIRYRPSKKMGNADFCSRFPLANTVPRSLDRE
FT                 YVNSLNFTNDIPIDFKDVAKETKKDVFLTQIIKYLQCGWPERVERELKDIK
FT                 SQAYDLELTEDCLLFRNRVVVPKSLQQNIMKLLHANHAGIVKIKQLARRTV
FT                 FWFGINADLEKYVKNCDVCNRTLIVPKTKYESSWSPTTRPFSRIHADFFHL
FT                 GEKVFLLIVDSYSKWVELDYMRYGTDCKKVIKKFVNVFARFGLPDVLVTDG
FT                 GPPFNADYFTEFMKNQGILVLKSPPYHPASNGQAERTVRTVKEVLKKFFLE
FT                 PQIKTLDVEEQVNYFLLNYRNSCLTKSGTFPSEHVFSYKPKILLDLVHPKS
FT                 HYKHNLAPRCQNSPIKENSRWNRVDELKYLNSGDALWYKNYRLKHVERWLE
FT                 ATFVKRLSLNVFQISVNGHVLSAHRDQIRLRNNTKPTGFTQIKNNSKRSRE
FT                 DDSEDEPDFLGFPEESFPSQSSLTISNKNSKPIISGVRRSDRLKKQRQEVN
FT                 RDTESRRRSNQ"
XX
SQ   Sequence 4970 BP; 1566 A; 916 C; 1044 G; 1444 T; 0 other;
     ctttaatggc aacgaaggat agatcaaaga cccagtgcgt gcaaatttaa caaatcggtg        60
     tgatttgccg agtatttttt tgtgaaaatt tagatcgttg agccgtactt agaaaaataa       120
     aaatcattaa ttttatgtgc tttaaacggc tgccgactca agtttgggta gtatacaaaa       180
     gtgatacttg tatcgtgtag aacgttaagt tcttaaaaaa aaattgtgac attgcctact       240
     tttcttatca tcacgcggtt caatcaccgc taacatctca gccaccacca acaattttgc       300
     caccttcgag accgtcgcca cgcggattgt cgccaccaat atcttcgcca tcgccgtcac       360
     cgccattgct gtccactacg gggtcattgt cagtattgtt tcctcatcag tattgttcag       420
     accatcactg agttgaagtt acctagctgt tgaagatctg agtgccgtga tcgtgtatta       480
     acgattgttg cagtaaacca agaattcgtc tcttgtgtgc acagcatctc aaacgagagg       540
     tgagtgactg gacttgacca ttataaaaga gactcgctct ttatagcaat aaatcgatat       600
     atcgtgtgct tgaattttga tagtagttga gtgcgtcctg agcagtggta ttacaattga       660
     tgagaaatta ttagtgattg gtttctgttt ttgttcaaga tcatacattg caacgatgtc       720
     gacgttcatc ggttccgtcg agccctacgt agtaggtaca tcgtttagcg attatgcgga       780
     gcgattacag catgttttca actacaatcg ggtacctgaa ggcaatcgca agtcgctatt       840
     tatcactgtg agtggagctg cagttttttc tgagatgaaa aaactatacc ctggtgttga       900
     tcttgacacg ctggagtata acgatattat aaacaaactt aaaggccggt tcgacaaaac       960
     ggatggacgc atggtacaaa aggcgctatt ctacgagcgg tgccagcgca aggacgagtt      1020
     agctgaggat tttattcttg atgtcaagct tctagcagaa agttgtggat ttggcgcaat      1080
     gaaggattcc atcatacgcg atcggttggt actgggcgca tatgacaaga aaacacgtga      1140
     acgtttactt gaggaagaag aaccatcact cgtagaaact gaacggatcc ttatcgcgcg      1200
     agagcaaatg gcacgtagtt cgttgcgaat ggagcaaacc agtgatcgag tgagtgcaat      1260
     tgaacgatct accacacgtg atcgcagaga tgatcacaca cgacgaaact gggaccatcg      1320
     taatggaaga agagaagtgt atccacatag tagtcgtcgt ggtcaagacc gttacaacta      1380
     tcgcagccga agtcgttcaa ggtcagcaca tagatggaaa acgaataata acaacaatgt      1440
     catgtgcagc tactgtaaga ttagagggca cgtgaggaaa aattgcttca aactccaacg      1500
     ttctcgggaa tcaattcggt ttgtggaaga tgaaaattct acggagcaat cgtcagcgtt      1560
     cgatttcaag cgtttgggac cacccaatcc caccgaggag gattccgagg aggatctcga      1620
     ttgtatgtcc attgaagctg ctgcacaggt aaatgagcca gtttttatta atgcaaaaat      1680
     caatggatta ggttttgata tggagatcga tacaggatct gctgtcgctg tggtaggtga      1740
     acagatttat aaatctcatt ttagtaagct acctctcaaa aagtgcaaac gaagattatc      1800
     tgtcgtggac ggtgctagat tgaaggtttc gggtatatta gacgttacag tttcgataag      1860
     aaacatgatt gctaacgtaa ccttggtaat tttacagggt agtaccaatt ttgtgccact      1920
     tgtaggaaga gattggcttg acgtgttctt caaaggctgg agaacaaaat ttttaaattt      1980
     atctagtata aacaacgtga atgtaatgga caaaacaatt gacataattg ataaaatcaa      2040
     acagaaatat aactctgtat ttagcaaaga tttgtctgtt ccaattgaag gttttgaggg      2100
     agaattaact atgcgggaat gtgctcctat ttttagaaaa gcttacacag taccattgcg      2160
     tttaaaagaa aaggtcatcc aacatttgga ttctcttgag gaaagtggaa taattacacc      2220
     tattcaggcc agcgattggg cttcgcctgt tgttgcaata gtcaaaaagg acaatgatat      2280
     ccgtttagtc atcgactgta aggtatcgat aaacaagttt atagtgccca atacttatcc      2340
     gcttcctcta gctcaagata tttttgccac tttggctggg tgtaaggtat tttgttcgct      2400
     ggatttagcg ggtgcttaca ctcaactgca actttcagag agatcgagga agtatatgac      2460
     tattaataca ataaaaggcc tatatacata caatcgcctt ccacaaggag ctgcctcttc      2520
     cgcagcgatt ttccaaaaag tcatggatca ggtcctgcat gacatagaag gagtgtcatg      2580
     ctaccttgat gatgtactta ttgctggaaa aaatttcgaa gaatgcaaaa ataaactcct      2640
     tttggttctt gaccgcctgg acaaagcaaa aattaaagtt aaatggaaca aatgcaaatt      2700
     tttctgggac atgtgataac agaaaacgga ctttcgcctt cccctgacaa aatagatact      2760
     attgctaatg ctaaagcacc aaataatcca acagagttaa aagctttcct tgggttgatc      2820
     aacttttatg gaaaatttgt accaaacctg tcatccaaac taatttgttt ttacaatttg      2880
     cttaaaaagg atgctaaatt tatttgggat tcaaaatgca acgaaaattt tgagatttgt      2940
     aagaagtatt tattgaaacc gaatgtttta gagtttttcg atcccaaaaa accgctcata      3000
     gtggtcacag atgcttgtgg ctatggctta gggggcgttt tggcccatga gatcaacggt      3060
     caagaaaaac ctatatcgtt cacatctttt actcttaacg atgcacaacg caaatatccg      3120
     attttacacc tcgaggcgtt ggcggtagtt tcttgcgtca agaaatttca tcggtatttg      3180
     tatggccaac attttgtgat ctacaccgat cacaaacctc ttcttggagt gtttggaaag      3240
     gaaactaagg atgctatttc cgttacacgt ttacaacgtt atatcatgga actatccatt      3300
     tatagctatg aaattcgata tcggccatcc aagaaaatgg gaaacgcaga tttctgctcc      3360
     cgatttcctc tagctaatac agtacctaga agtttagacc gagagtatgt aaacagccta      3420
     aattttacta atgatatacc aattgatttc aaggatgttg ccaaagaaac gaagaaagat      3480
     gtgtttctca cacaaatcat taaatatctt caatgtggct ggccggaaag agttgaacga      3540
     gagttgaaag acatcaaatc ccaagcttat gaccttgaat taaccgaaga ttgtctcctg      3600
     tttcgtaatc gagtagttgt gccgaaatct ctccaacaaa acatcatgaa gcttttgcat      3660
     gctaatcatg cgggcattgt aaaaattaag cagcttgctc gtcgcacagt attttggttt      3720
     ggcataaacg cagacctgga aaaatacgtt aagaactgtg atgtttgtaa tcgtactctt      3780
     attgttccta agacaaaata cgagtcgtcg tggtcgccca ctaccagacc ttttagtcga      3840
     atccacgctg atttttttca tcttggggaa aaagtatttt tgttaatcgt agacagttac      3900
     tcgaaatggg tggaattaga ttacatgcga tatggaacag attgtaaaaa ggtcataaaa      3960
     aagtttgtaa atgtttttgc tcgattcggc ctcccagacg ttcttgtaac cgatggtggg      4020
     cctcctttca acgcagacta ttttactgaa tttatgaaaa atcaaggaat tttagttctt      4080
     aaaagccctc catatcaccc agccagtaac ggacaggctg aaagaactgt tcgaacggtc      4140
     aaggaagtat taaaaaagtt ttttttggaa ccacaaatca agacccttga cgtggaggag      4200
     caggtgaact attttctctt gaactacaga aatagctgtc tgacaaagag tggaacattt      4260
     ccctctgagc atgtgttttc atataagccg aagatattac ttgatcttgt tcacccaaaa      4320
     agtcattata agcataactt agctccccgt tgtcagaatt ctcctataaa agagaattct      4380
     agatggaatc gggttgacga gctaaaatat ttaaattcgg gagacgcatt atggtataaa      4440
     aactaccgtc tcaaacatgt cgagcgatgg ttggaggcga catttgttaa gagactatcg      4500
     ttgaatgttt tccaaatttc ggtgaatggt catgtgttat cagcacatcg agatcagata      4560
     cgattacgga ataatacaaa accaactgga tttacacaaa tcaaaaataa ttccaaacgg      4620
     tctcgtgaag acgactctga agacgaacca gatttcttgg gatttcctga agaatccttt      4680
     ccgagtcaat catctttgac aataagtaac aaaaattcta aacctatcat ttcaggagtt      4740
     agaagatctg accgtttgaa gaaacaacga caagaagtaa atagagatac cgagtctcgt      4800
     cgaagatcga atcagtgatt atattaataa agatttaaaa ttaagaaata gccttgaagt      4860
     gttaaatagc aattgttcag aattgcatgt acgttagaat ttcagaaatt ttataaatag      4920
     tatcattgaa tcacatttat ttaattctta agtttaaggg aatggaggac                 4970
//
ID   Gypsy-135_AA-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   AAGE02025177;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-135_AA_;
KW   Gypsy-135_AA-I; Gypsy-135_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025177; Positions   34410   34574.
XX
SQ   Sequence 165 BP; 53 A; 35 C; 28 G; 49 T; 0 other;
     tgtcgtgtcc gaagataact gttatactag catatttcga tatccgaatg taactgcgat        60
     cgaatagcga agcttatcgc gatacgaatg tagaccaata aatcagttag acttttacct       120
     ccaagtgaac cagtcgtttc atataatttc ccttatcaca gaaca                       165
//
ID   Gypsy-136_AA-I repbase;    DNA;    INV; 8134 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-136_AA_;
KW   Gypsy-136_AA-LTR; Gypsy-136_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8134
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1005-1005 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5073-5552] - Integrase core
CC   'CCAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           356..2674
FT                 /product="Gypsy-136_AA-I_1p"
FT                 /translation="MAVRLPFADHLINDEVDYELTIRGKIEETKNDVEAKY
FT                 RLLRYLFKEDEKEGRVYESPFTIDQEFDLICSRISELRSKLANGLDDRSFS
FT                 RLKHYWGRVYRIMTKDGESERMRKELLKDIRTELSKFEGRKELAQRPDPFN
FT                 FEGEDQSKKNGAKQKEQVDQNGNREGAEDRASEREKALEAQVKELQRKLEI
FT                 LLNESKGAQGGDKNSDMENESLKGVNDGSRGYAGSASHTENQNEREKVDRD
FT                 SRASLSGQSSKHNELARNYAQGNETYDNYRQNQERGSYHRQESRNYRAVER
FT                 NDTVRERFQGDDEWDSYDRRRDGLGFDRFGNEHLERRNERFPLNRTSQMER
FT                 EVVQRPYEVRGPWNEAVTRRAEVAQDRDAYRGQQASNAFRDEQIGHPFERR
FT                 RSNGPWRHQQDVRRSYDQRWSGENAERHWSRDRDEQFRRSVGREPGIQLEF
FT                 SSDEFSEDERRFTRRQREPRGNFRRISEAEIRDADRRMEKWHLSFSGDARS
FT                 RSLEDFLLKVRRLARMDRIADDVLMQRIHTILRGEAYDWYLCYADEFLDWE
FT                 QFEERIRYMYGNPNKDQGNRQKIYERKQNRNETFLSFKMEIERLNKLLSTP
FT                 LDPQRIFEVIWDNMRPHYRSKLACRTVDSLRKLEYYAYRIDANDPIFRNSR
FT                 EGPSKTNAVHNIEVERKEDESYSSDSEAENVNVMGSRFERDKKHRDQRSAG
FT                 TNGRSQGGTARDTPNTVQLPLCWNCRKNGHLWRNCPEEKRLFCYLCGAQGK
FT                 TATTCENHSGDARVRAMDNSGN"
FT   CDS           3483..5939
FT                 /product="Gypsy-136_AA-I_2p"
FT                 /translation="MDAELERYKRMDAIEECASEWASALVPVRKANGKLRV
FT                 CLDSRRINALTKKDSYPMRNMGEIFHRLEKAKYYSVVDLKDAYFQIPLKEE
FT                 CRDFTAFRTPKGLYRFKVCPFGLTNAPFTMCRLMDKVIGFDLEPYVFVYLD
FT                 DIVIATKTFSEHVRLLRIVGERLAKANLTISLDKSRFCRKKVAYLGYLLTD
FT                 KGVSIDNARISPILDYARPKNVKDVRRLLGLAGFYQRFISNYSRIVAPMSD
FT                 LLKKSKQKFVWTEAAEAAFGDLKAALIAAPILGNPDFSQPFCIESDASDLA
FT                 VGAALTQQQDGQPRVIAYFSKKLSSTQRKYSSVERECLGVLLAIQHFRHFV
FT                 EGTRFRVVTDARSLLWLFTIGVESGNAKLLRWALKIQSYDIELEYRKGKNN
FT                 VLPDCLSRSVETVLTVNVDEGYQELASKIESCPTQYSNFRVVDGEILRYCK
FT                 SEDGIEDGRFRWKRYPPKADRVEIIRRIHEEAHLGSEKTLAAVRQRFWWPK
FT                 MAVDVKRQCQACMKCQTSKASNQNTTPPMMGQKKVVEHPWQFLAMDYVGPL
FT                 PSSGKGRSTCLLVVTDLFSKFVMVQPFREATAETLAHFVENSIFLLFGVPE
FT                 VVLTDNGTQFASKTFGELLEKYHVSHWRTPNYHPQVNDSERVNRVITTAIR
FT                 ATIKNHHKEWANNLQRIANAIRNAVHSATKYSPYFLVFGRNQVSDGREYRQ
FT                 MRDTGSADQAGLVPEEKEKLLEEVRENLKAAYQKHSSYYNLRSNANCPTYS
FT                 VGEAVLKKNTILSDKGKGVSAKLAPKYVPAVVKRVVGSHCYDLEGVDGKRL
FT                 GIFHCKFLKKLAKPGSP"
XX
SQ   Sequence 8134 BP; 2363 A; 1494 C; 2214 G; 2057 T; 6 other;
     aattggcgcc caactaaggt cttcggaatt atttgaaaat ttatgtaatc tttgatgtag        60
     agttaaattt tgtgaaatat ttatgcggta tttatggata gttttaggtt cacgtgttga       120
     tatttttgga gtatgatttc gtctggattt tgaattttgt ggagattctc tgagtgtttt       180
     gaggattttg taattgagat atattctttg gaggatattg agttctgtta aagattgaat       240
     tgggatagtg taatataata attaatttga aagatttttg tgatagttta tgcgttgaat       300
     tctatttatt ttctttattt cttattatat ttgaattgaa tttacggttt tcggaatggc       360
     tgttaggctt ccatttgcgg atcatttgat caatgacgag gtagattacg agcttacgat       420
     tagaggaaaa attgaggaga cgaaaaatga cgttgaggcg aaatatcggt tgctgaggta       480
     cttattcaaa gaagatgaga aagaaggaag ggtatatgag tctccattca cgatcgacca       540
     agaatttgat ttgatctgct ctagaatttc ggagttgagg agtaagttag cgaatgggtt       600
     ggatgatcga tcgttttccc gtttgaaaca ctactggggt agggtctaca ggataatgac       660
     caaggatggt gagtcggaac gaatgcggaa agaactgctg aaggatatac gaaccgagtt       720
     gagtaaattt gagggacgga aagagctagc gcaacggcca gatccgttta actttgaagg       780
     tgaggatcaa tccaagaaaa acggcgcaaa gcagaaagag caggttgatc aaaacgggaa       840
     tcgggaaggg gcagaagata gagctagcga gagagagaag gcgttggagg cacaagttaa       900
     agaattgcaa cggaaattgg aaattttgtt gaacgaatca aaaggggctc aaggtggtga       960
     caagaatagc gatatggaga atgaaagttt gaagggtgta aatgatggta gccgaggata      1020
     cgcaggttcg gcgagccata ccgagaatca aaatgagaga gagaaggttg acagggattc      1080
     tagagcttct ctaagcggtc aaagctcaaa acataatgaa ttagctagga attatgcaca      1140
     agggaatgag acgtacgata actacaggca aaaccaagaa cgcggcagtt accaccgaca      1200
     ggagagcagg aattaccggg ccgtagaaag gaacgataca gtgagggagc gatttcaggg      1260
     agatgatgaa tgggacagct atgacagacg acgcgatgga ctgggcttcg acaggttcgg      1320
     taatgaacat ttggagcgaa ggaacgaaag atttcctttg aacagaacga gtcagatgga      1380
     gcgagaggta gtacagcgac cgtatgaagt gcgaggaccg tggaacgaag cggtgacacg      1440
     tagagcggag gtggctcagg acagggatgc ctaccgaggt caacaagcta gcaatgcctt      1500
     ccgagatgag cagatcggac atccattcga gaggcgtcgc tcaaacggac cttggagaca      1560
     tcagcaagac gtgcggagga gctacgatca gcgttggtcc ggtgagaatg cagagcggca      1620
     ttggagtcgg gatcgagacg aacaatttag acgaagtgtt ggtagagaac ctggaattca      1680
     gttggagttc agttccgatg aattctcaga agacgagagg aggtttacca ggagacaacg      1740
     cgagccgaga ggtaacttca gacgaattag tgaggctgag attcgggatg cggatcgtag      1800
     aatggagaaa tggcacttga gctttagtgg ggatgcacga agcagatcgc ttgaagattt      1860
     tctgctaaag gtgcggcgtc tagcaagaat ggataggatc gccgacgacg ttctcatgca      1920
     gagaattcat accattctac gtggtgaagc atatgattgg tatctgtgct acgcggacga      1980
     gtttctcgat tgggaacaat ttgaggaaag aatccggtat atgtacggca atccgaataa      2040
     ggaccaaggg aatcgccaga aaatatatga gcggaaacag aaccgaaatg aaactttcct      2100
     tagtttcaaa atggaaattg agcggctgaa caagcttctc agtactccat tagatccaca      2160
     gcgtattttc gaagttatct gggataacat gcgccctcat taccgttcga agctggcatg      2220
     tagaacggtc gatagcttgc gaaaattgga gtactacgct tatagaatcg acgcgaacga      2280
     cccaattttc agaaattctc gggaaggacc aagtaagacg aatgcggtcc ataatattga      2340
     agtagagcga aaagaagatg aatcttacag ctcggattcg gaagcggaga atgtaaatgt      2400
     gatgggaagc aggtttgaga gagataaaaa gcacagagat cagcggtcag caggaacgaa      2460
     tggtagaagt caaggaggaa ctgctcggga caccccaaat acggtacagt tacctctatg      2520
     ttggaactgt aggaaaaacg gtcatttgtg gagaaattgt ccagaagaga agagactatt      2580
     ctgctatctg tgtggcgcac aagggaagac ggcgactacg tgtgaaaacc actcgggaga      2640
     tgcgagagta cgggctatgg ataactcggg aaactaagcc aggagtgcca gctagggaac      2700
     gacagcattc cggtttcgag agttcccagg gagatggagg cgattccata cgtagatcca      2760
     taccagaacg tatgtgaggt aaaaattcac acggacacgt gtccgcatgt ggcggtacaa      2820
     tcttcaacaa gacctacgac gcacttttag actcaggagc gagtgtagcg taacgagctt      2880
     ggcaagcata gcggaagaaa acgggctgac cgtgcaccag agtccggtta aaatagtgac      2940
     agcagataag actgtgcaca agagccaagg gtatataaac ttaccgatgg aatttcgggg      3000
     tattacgaag attataccga ccttgatagt accgcaggtt gccaggagtc tgatcttggg      3060
     gtacaatttt tggaaaacct tcggtataca gccaatgatt caagggacag acggttttga      3120
     gcaagtagcg accgttagac accagtttag caagtggtga aggtagtcgt ccgattgagg      3180
     ttccaattct tccgattgag acgttaccga cgatcaaagc atccgatccg gatgagtcgt      3240
     tggatattcc ggcattggaa ttacccgagc cgtcgaaagc aactccggaa accattgaaa      3300
     cggaacatga attgacaaaa gaacaaagga aggaactgac agcagcgatc aaggtattcc      3360
     catgtacaac cgagaaccgt ttgggaagaa cgtcggtgat tcagcatgag attgtattga      3420
     cagaggaggc caaaccgagg cgtcaaccgc tataccggtg ttcaccggca atccaggcgg      3480
     aaatggatgc ggaactcgag cggtataagc gaatggatgc cattgaagaa tgtgcgagtg      3540
     aatgggctag tgcactagtt cctgttcgta aagcgaacgg gaagctacgt gtttgcctag      3600
     actccaggag gattaacgca ctcacgaaaa aggactccta tccaatgagg aatatgggcg      3660
     agatattcca tcgtttggag aaggcgaagt attactccgt agtggatctg aaagatgcct      3720
     attttcagat ccccctcaag gaagagtgcc gagacttcac agcgttcagg acacccaaag      3780
     gcttgtaccg tttcaaggtt tgcccctttg gattgacgaa cgcaccgttt acgatgtgcc      3840
     ggctcatgga caaagtcata gggtttgacc tcgaacccta tgtatttgtg tacttggacg      3900
     acatcgtgat cgctaccaag actttcagcg agcatgtacg tctgctgcgc atcgtagggg      3960
     agaggttggc gaaagccaat ctgaccattt cgttggacaa gagcaggttc tgtaggaaga      4020
     aagttgcgta ccttgggtat ttgctaacgg acaaaggagt ctcgatagac aatgcacgaa      4080
     tttctccgat tctggactat gcacggccga agaatgtcaa ggacgttcga cgactgttgg      4140
     gtttggcggg cttctatcaa cggtttatca gcaattacag ccggatagtt gccccaatgt      4200
     ctgatctgtt gaagaagtcg aaacagaagt ttgtctggac cgaggcagca gaagcggcgt      4260
     tcggagactt gaaagcggct ctgatagcag ctccaatctt gggaaaccca gacttctcac      4320
     aacctttctg catagagtca gatgcatctg acctcgctgt gggagctgct ttgacccagc      4380
     agcaagatgg tcagccacga gtcatcgctt actttagtaa gaaactcagt agcacacaac      4440
     ggaagtattc cagtgtagaa agggagtgcc taggagtttt actggcgata caacacttcc      4500
     gtcacttcgt ggagggcact cggtttcgtg tagtaaccga tgcacgtagc cttttatggt      4560
     tgtttacgat cggcgtagaa tctggcaacg caaaactgct gaggtgggcg ttgaaaatcc      4620
     agtcctatga cattgagctg gaatatagga aaggcaagaa taacgttttg ccagattgcc      4680
     tgtctaggtc ggttgaaaca gtwctgacgg tgaatgtgga cgaggggtac caggaactgg      4740
     cgtcgaagat cgaaagctgt ccgacacagt actctaattt tcgtgtggtc gatggagaaa      4800
     ttttgagata ctgtaaatcg gaagacggaa tcgaagatgg acgtttccga tggaagagat      4860
     atccgccgaa ggctgatcgt gtggagatta tccgaagaat ccacgaagaa gcgcatttgg      4920
     gttcggagaa aacgctagcg gcggttcgac agaggttttg gtggccgaaa atggcggtgg      4980
     acgttaagcg gcaatgccag gcttgcatga agtgccaaac aagcaaagcg tcgaaccaaa      5040
     atacgactcc accaatgatg ggccagaaga aggtcgtaga acatccgtgg cagttcttag      5100
     cgatggacta tgtgggtccg ttaccatcgt ctggaaaggg gagaagcacc tgcttactag      5160
     tagtgactga cctgttcagt aagtttgtca tggtgcaacc gttcagggaa gcgacagcgg      5220
     aaactttggc tcacttcgtt gagaattcca tcttcctgct ctttggcgtg cctgaagttg      5280
     tgcttacgga caacggaacg cagttcgcgt cgaaaacgtt cggggagttg ctggagaagt      5340
     accatgtctc tcattggaga actcccaact atcaccctca ggtgaacgat tccgagaggg      5400
     taaatcgtgt tatcacgact gctatccgtg ctaccatcaa gaatcaccat aaagagtggg      5460
     caaataacct gcagcgtatc gcgaatgcga tccgaaatgc ggtccatagc gctaccaagt      5520
     actcgcctta ttttctggtg ttcgggagga accaggtgtc cgatggtaga gaatatcggc      5580
     agatgcgtga cacggggtca gcggaccagg caggtctggt accggaagag aaggagaagc      5640
     tactggaaga agtacgggag aatttgaagg cagcgtatca gaagcattcg tcatactaca      5700
     acctcaggtc gaatgcaaat tgtccgacat attcggtagg tgaagcggtt ctgaagaaga      5760
     acacgatcct ttcggacaaa gggaaagggg tgtcggctaa gctggcaccg aagtacgttc      5820
     cagcagtcgt caagagggta gtgggtagcc attgctatga tttggagggc gtggatggaa      5880
     aacggcttgg aattttccat tgcaagtttc tgaagaaact tgccaagcca ggctctccgt      5940
     agtttgaccg atttggacct tcagctatgt acctgtctta gacagtaaca aggaccagtg      6000
     ctaggcctgg tctctaaaat atttgaaaag ggacctgttt tccagctatg atgctcttgg      6060
     gttgcaccca agagttacaa atactccgtt gaagctgtgc tccgggtaat gaaaacactt      6120
     gttcgccttt gcgaagctta gcgctgatct tcggatcagc tgccgcccct acaaaacctt      6180
     tacttactag gggcatcctt ggactgtttt atcggtccaa gaagaagctt cgcattgtgc      6240
     ttgataaggg agttctctag ttctttcaaa gtagaaccgt tggaaaggag tgtttgtggc      6300
     tatacgtgat cccctcgacc agaagtcaga gagagccctg gaagttttcc cgggcgatga      6360
     tctcgtaact tagaagctca gagccgtagt gcgttgacga gcagtaccaa agggaagtaa      6420
     aaatcgtgag tctgatattg gggagtatca gatgctgatc gaaatcaaga ctcagaagtc      6480
     atccataagg aaggacgatg ttgagcaacc cgagtcaatc gagcgatagc tacaacatct      6540
     tcagaaacgg gctctgtctt gaaggaattg gatgtactgc cgtaatgtgg gatggacaag      6600
     gtcatatgaa ggttgtttga aaatttggcg ttgaatgaga gataagggat gtttcgaaat      6660
     ttgtaaataa tgttagtgtt gtagttcaca aaggtatttc ttaaggctag gttagtactt      6720
     ataattaata tctttaataa aataatataa aatacaaaaa acagcttaaa agtagggttt      6780
     gggtccatgc tccgtcaatg tcttcsttca catcttcagt cagtcgtcca agtacctaaa      6840
     acagcaaaac aaagaattag tacccgttca tgcacaaatc agcacttgga aagatgcctt      6900
     cctggtaktc gatccaccgg aagttgccgt gtcggtcctt aagcggtctt caaaagaggt      6960
     cgtccwgaca gggtccggtt cagtgcwgca gaagatcgtc aacgtcttcg tattcctccg      7020
     tcagtccgtc tcgatgtcca tcgtagctct aaaactgcaa aaacaagaga acttcaacat      7080
     aataaacagt ataacagcta ccttttccgt tagtttttag gaaatttagc caatttccgt      7140
     acgtaaatca aggattaatt accagaaact ttcacaaatt tttgttgcac tgcactttca      7200
     atgtttactt ttttactttg acgtttatca gaaagggtgg gtggttcagt gtcgtgagtg      7260
     tccggagaga atttctctga gtgtcgtaat agagttggtc ttgtttgttt tcattgatta      7320
     atgtttcgta agagctgaga gagagcatcg gcgtttgaaa cattagtgag atgatagttt      7380
     gtgagaattt atgttataca ctcatacatt gatggaagcc ggagaacact ctggtgtgtc      7440
     aatgtatgta gtgcgaataa tgtgtgatgt atgttacgtt ttgtcccaca cagagacgtt      7500
     gagaccaggt agcaggcttg gtggttctct gtgagacaga acagttgcgg tgagttcaga      7560
     gcagaaacat gttaccaacg atgaggattg gtgtagttga agcctgaatg aaccagtcat      7620
     ggagatgtga gttgcggtca tataagagag gcagttaacc aacagagagg attggtgttt      7680
     gtctcgcttt atgtgtacct gttaagtgtc gatttwcgtt cattgagaat tcgttcaatg      7740
     atgtgttgtc atgatttggc ttctgctgag actgaaaggt ttctgtagca atgccgtttt      7800
     ctgaattttt gaggtttgag catttgttgg tatctgtatg cacacccatt ctgagaacgt      7860
     caaagcgctc atatgtatct tcgttggagt ggacctatat tttgtatata tttgtaaata      7920
     gtaatgatag ttgatatgaa ttagtttttt ttttgttgta tttattatga attattttgg      7980
     tgaataggat aggaacccgg atgaattagg aaaaattctc aaaataaggg aataatgaaa      8040
     ttgaaatact ttgtacattt ggtgtacagt ttaccactac gaaaatttgg tttaaatcct      8100
     taaaccaaat tttcgtaaat cagccctggt gcaa                                  8134
//
ID   Gypsy-136_AA-LTR repbase;    DNA;    INV; 1907 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-136_AA_;
KW   Gypsy-136_AA-I; Gypsy-136_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1907
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1006-1006 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1907 BP; 499 A; 407 C; 485 G; 514 T; 2 other;
     tgtagcagtc aggaattttg taaatagttt tgtatatawt tggtgtaaat aatgtgaata        60
     gaataggttg gtaagaacat gcagtcttta agaatgaatt tgaattttga aaagtattcc       120
     cttagcgtag gcaaacgagc attaaacact tgcaaacgct tccctgggtc gaagccattt       180
     gttttctcga taaggtggga aagggaaggc agcacgacta gcatacaagt tatccaatgt       240
     aactgggtag tcacgacagt acacgaagac tttcgggaaa tgacgtactt ccgggtgcgt       300
     tcgagataca ctttccctta tctgaggctt cacagactcg atcatttcgt ccgtgatcat       360
     ccaaagagtt ggaagtgtcc gcgtttgcta gttagttttt cgtgtgccga gagtatgtgt       420
     tagcaaagtg atgttaagta tagttaagta gtttaatgta gaatgtttcg ttctagtagt       480
     aggccaaaaa gtgtgcgtga agaattgtgt gtgcgaaggt agaagctaga acctataatc       540
     aaggtgagaa tttgtgctct agacgtgctc tttgtgccag tgcttatgtt ccgtgtcctg       600
     ccagattggc ttgtatttcc cgcccacagt tcttcgcacc caagcgcgac atttctttcc       660
     ccaacggacg aggaattcct ggctaccgcc aaccagccag aagcggacgg attcgtcacc       720
     atatcagtcc gaggaggccc aggggacctt cacgtggacg gagtccactg gctggatcgt       780
     caatcgaccg gtaaggcagt actaacagcc gaaagaccgc catcgcttgg gtaagtcaac       840
     caccatttcc tttttgatca cgccgtgacg tgtaaaatat ccacgacagc catcaaccaa       900
     gccggtgaga gcatcgacct gtcgaacagg tcatcgactg ccggttacgt tcaacagcag       960
     caatccagtt agccaaatca ttcttttttc ggaacgaagt gcggcgtccg gtgagggcgc      1020
     cgcggagatt tttttttgtg ccagtcaaag actgaagatc taatgtgcca ttagcgccaa      1080
     gaaccatcaa gccgtttgaa gatcgaaacc ttttttcgat agcgtcttgg gatccgcctt      1140
     cggacccgtg aaaatgcgtg cgtgagtcct tttcgtgacc gccgcaaaac aagcttgtma      1200
     ccaggagcgc agacggatac gcagctgagc ttccaacacg tgacgtcacg tagaacgtag      1260
     agagcactga gcacagtagg ttagataggg aggagttaag agaaagcaca cacaagctag      1320
     gagggaggaa gagagaacga aacacataca gataatgagt tcgaactgaa tccatagcaa      1380
     taaaacatgt atgttaccct aagaatttaa acgaatatat ctgtccccaa tagtaaccgc      1440
     caataaatgt tctacgttat gagtttcttc cctagccatt tggttgttta attgtattta      1500
     acgtcacagc gcgatttgta gtttgatgtc ccgtccccca catgatcgag tttgttttgg      1560
     tgggttctga ttctcttcca gttcggtgag atgaccatag gtgagttgag agagtttgcc      1620
     gatgatgaga acttctctca agtgagatgt taggggtacg ggtggtctct caccgattct      1680
     ctgagtgtcg tcgtgcgtat acggttatgt tgcgataata gggttttccc gtttggccgt      1740
     tttagttcgt agccagctgg aacgatccat aaatcctttc gaggaaatta aatggactcg      1800
     ccctcaggga agtctcatcc gggcaattag aaattggacg cgtggtctcc ctagtggagt      1860
     ggcgcttaag ctgcgtgttt ttgaagcgga tcaccctgtt ggctaca                    1907
//
ID   Gypsy-137_AA-I repbase;    DNA;    INV; 5500 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-137_AA_;
KW   Gypsy-137_AA-LTR; Gypsy-137_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5500
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1007-1007 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4178-4648] - Integrase core
CC   'GTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1052..3907,3911..4852)
FT                 /product="Gypsy-137_AA-I_1p"
FT                 /translation="MSLTTTTEPYVPGTIPFSQYLEQLEFLFEHNNYSADK
FT                 YKISFLAVCGTEVYNQVKLLFPGQNVRDLTYKQITDELKKRYDKKDNDVIH
FT                 TYKFWTRRQGQHEKSEDFVLSVKQLAELCGFGDFKDRAIRDALVIGTYDRQ
FT                 LQKRLFDEDDLTAAKAEKLIVNQELSTDRTRFVNRDDDKRVSVVARLGRRL
FT                 DRGPSRQSFRSRSRSFDRNRSFYNRSRSGSRRNEIHDPDKVFTCSFCHKTG
FT                 HTKKFCFRLKRKSPKKTPRKSKPFVKFIGSPKPLPSQTSGLFKRLKKDLAS
FT                 DSEDEDLPCMMINARSKVNEPCYVEALVQKTRLTMEIDCGSAESVISEALF
FT                 LRNFNKCSIENSRQRLYVIDGNRLSILGKARVSVRLNGITEELYLIVLQGD
FT                 KDFVPLMGRSWLDIFYSGWRDTFSRPVVPNRRVNAMTDVDARDEAVEEIKS
FT                 KFPELFDKKLLNPIVGFEGDLILKDDTPVFKKAYEVPLRLRDKVVEHLDAL
FT                 EKDGVITPIEASEWASPVVVVIKKDKGIRLVIDCKVSINKLIIPNKYPLPL
FT                 PQDLFAALSGSKVFCSLDLAGAYSQLLLSKRSKKFMVINTIKGLYVYNRLP
FT                 QGASSSAAIFQKVMDQVLKGLENVFCYLDDVLIAGKDFDDCRKKLFLVLER
FT                 LARVNIKVNFKKCKFFVDNLPYLGHVLTDAGLLPCPDKVQTIREARAPQNV
FT                 TELKAFLGLITYYSKFIPNLSSRIRVLYGLLKKNVRFDWNADCDLVFNQCK
FT                 QFLLKPNLLEYFDPDKPVVVVTDACNYGLGGVIAHVVDGEEKPISFTSFSL
FT                 NDAQKKYPILRLEALAVVSTVKKFHKFLYGKSFTIFTDHKPLIGIFGKEGR
FT                 NSLSVTRLQRYVIDLSIYDYDIVYRPSAKMGNADFCSRFPISQEVPKELDR
FT                 DYIKSLNFTGDFPLNYKAIAAETEKDEFLLRIMEYLRKGWPDRLEKRFGVY
FT                 SHHQGLEIVDGCLLFKDRVVIPDCMKREVLKLLHRNHSGMHKIKQLARRTV
FT                 YWFGMNGDIEQFVRSCRVCQETTALSKRAPYTPWIPTKKPFSRIHADFFFF
FT                 EKKVFLVIVDSYTKWVEVEQMKTGTDSKKVIKVSLGVFPRFGLPDVLVTDG
FT                 GPPFNSEHFVNFFKEQGVVVMKSPAYHPESNGQAERMVRLVKDVLKKFLLD
FT                 PETRKLDMEEQISYFLMNYRNICLASDGAFPSERLLSYRPKTTLDLINPKH
FT                 SFKYNLTEPDDGDQRACSSKTDKTHDLLTNLRNGDLVFYKNPETKLTLDNG
FT                 YLQNI"
XX
SQ   Sequence 5500 BP; 1501 A; 1047 C; 1293 G; 1658 T; 1 other;
     gtggcgacga ggtgaatttt gttttccgac actccgtgca tttcacgacc gctggcgctt        60
     gtgcttttgg cgtggatttt tcggcgtaag ttggattttg gtgaaaaatc taaaaccgtg       120
     aaaaccaaaa ggttttcttt tctattattc gccaattgtt attgcgtgca aaagaagttc       180
     ttaaaatctc gcagttttta gtgccggtaa aggtttcagt gaagtgattt ttcttccagt       240
     gttgtggttt agcgtggcgt gaaatatcgc ttttaatcgt gaaattgccg ctatccattt       300
     tttattttca acggaagaag cgtacttttg ttataagtac cattatttca ataagcaatt       360
     gaaataagag gctttttatt gtcctccatt atcagctctc tttgctttgt taaattccta       420
     agaccatttt cttttcatcc acagcacaat aaaagaacgc cgtttgcaat cagtgtactg       480
     gtcaactgtg gcagtgcggc ggtaaaattg tctgtcagtc aacgaagagg aaaaagccga       540
     aaaacgtcag attgttttcg atttgtgtgc gagtgaagtc ggtgcgagaa aactgcatca       600
     aaactgcata ttttttgttg ttgctgctgg acgttgaccc tgtggttgct gctgttggtg       660
     cattttctgg tggacgtgag gtgcaggaag agttcatcga cctcttggcc ggttgatgac       720
     ctaccattgg cgtattggag gaatcatttt gaggagctgt tgttgctgtt ggcttttgac       780
     ccgagccttt gtgaagttgc tgctgttgct gtttggcttt tgacccgtgt gccattgaag       840
     agtttgctgt tgttgctggg ctgttgtttt cgggccgttt ttattgcagt gttttgccgt       900
     ttttgcattg cggccatagc aggtatgtca ttttgtttgt ttttattatc gttcattttt       960
     tctgtgaatg ctaaagtgat ttttgatcga cgaagacatt tcggggaaac taattagtgc      1020
     tgcttgattt tctttgcttt ttgtctgtag gatgtctttg actacgacta ctgagcccta      1080
     tgtgccaggt acgatcccat tttcccagta tttagagcag cttgagtttt tatttgagca      1140
     caataactac tcagctgata aatataaaat ttcctttttg gccgtttgtg gcaccgaggt      1200
     ttataaccaa gtgaagcttt tatttccggg tcagaatgtt agagatttga cgtataagca      1260
     gattactgac gagcttaaga agaggtacga taaaaaagat aacgacgtga ttcatacgta      1320
     caaattttgg acccgtagac agggacagca tgagaaatct gaagatttcg tgctctccgt      1380
     aaagcaatta gctgaattat gtggcttcgg ggattttaag gatcgtgcca tccgtgatgc      1440
     acttgtaata ggcacttatg atcggcagtt acagaagcgg ttgtttgacg aggacgatct      1500
     aactgctgcc aaggcggaaa aattgatcgt taaccaagaa ctgtctactg acagaactcg      1560
     tttcgtgaac cgcgatgatg ataagagggt cagtgttgta gccaggttgg gtaggcgttt      1620
     ggatcgtggt ccttccaggc aatccttccg tagcaggagt aggagttttg acagaaaccg      1680
     ttctttttat aaccgaagca ggagcggtag taggagaaat gagattcatg atccggacaa      1740
     agtttttacg tgttcctttt gtcacaaaac aggacacact aagaaattct gctttaggtt      1800
     gaagaggaag agtccaaaga agactcctag gaagagtaaa ccttttgtaa agtttattgg      1860
     ttctcctaaa cctctgcctt cccaaacttc ggggcttttt aaacggttga agaaggattt      1920
     ggcttccgat tccgaagatg aagatttacc atgcatgatg ataaatgcca gaagtaaagt      1980
     gaatgaacca tgttatgtcg aggcattagt tcagaaaacg cggttgacta tggagatcga      2040
     ctgtggatcc gctgaaagcg tgatatccga ggctcttttc ttgcgaaatt tcaacaaatg      2100
     ttccatcgag aatagtcgcc agagactata cgttatcgat ggtaacagac tcagtattct      2160
     gggaaaagcg agggtctcgg tacggcttaa cggtatcacg gaggagcttt atctgattgt      2220
     gctgcaggga gacaaggact ttgtgccgct aatgggtcgc agctggttgg atatcttcta      2280
     cagtggatgg agagacacct tttctcgacc ggtggtgcca aatcgacgcg tgaatgccat      2340
     gacggatgtt gatgcgaggg acgaagcagt cgaagaaatt aaaagtaagt tcccagaact      2400
     ttttgacaag aaactattga atccgatcgt tggttttgag ggcgatttga tactcaaaga      2460
     tgatacccct gtttttaaga aggcgtacga ggtaccttta aggttgagag ataaggttgt      2520
     cgagcatctt gacgctttag agaaggatgg tgtaattacg ccgatagagg ctagcgaatg      2580
     ggcttcgccg gtggtagtgg tgatcaaaaa agataaagga ataagacttg tgatagactg      2640
     taaagtctcg atcaataaat taataatccc taataaatac ccactaccat taccacaaga      2700
     tttgtttgcc gcactttctg gctctaaagt tttctgctct ttggatcttg ctggagcata      2760
     ttcccagctt ttgctttcaa agcgatccaa aaagttcatg gttatcaata ccattaaagg      2820
     cctctacgtt tataaccggt tgccgcaagg cgcatcgtcg agtgccgcaa tattccagaa      2880
     agtgatggat caggtgttga aagggttaga aaatgtattc tgttatttgg acgacgttct      2940
     tattgccggt aaggattttg atgactgcag aaagaaactt tttttggtcc tagagaggct      3000
     tgctagggtc aatataaaag tgaactttaa gaaatgcaag ttttttgtcg ataatttgcc      3060
     ctacctgggt catgttttga ccgatgcagg tcttcttcca tgcccggata aagtacagac      3120
     tattcgcgaa gctcgcgctc cgcaaaatgt tactgaactt aaggcttttt taggtttaat      3180
     tacctattat tcgaaattca ttccaaattt gtcctcccgg attagagttc tttatggact      3240
     tttgaaaaag aacgttcggt tcgattggaa tgctgattgc gacttggttt ttaaccaatg      3300
     caaacagttt ttattgaaac caaatcttct agagtacttt gaccctgaca aacctgtggt      3360
     tgtggtaaca gacgcttgta attatggcct cgggggagta attgcccacg tagttgatgg      3420
     agaagagaaa cctatctctt tcacttcatt ttctctaaat gacgcccaga aaaagtaccc      3480
     cattcttcgt ctggaggcgc tggctgtcgt tagtacggtg aaaaagtttc acaaattcct      3540
     gtatgggaag agttttacaa tcttcaccga ccacaagcca ctgattggaa tctttggaaa      3600
     agaaggaagg aattctcttt cagtcacacg acttcagcgc tatgtaatag atctttcaat      3660
     ctatgactat gatatagtct acagaccgtc agcaaaaatg ggaaacgcgg acttttgttc      3720
     ccgatttcct atttctcagg aagttcctaa ggagctagac cgagattaca tcaaaagcct      3780
     gaactttact ggagactttc cgttaaacta taaggcgata gccgctgaaa cggaaaaaga      3840
     cgagtttctt ttgaggatta tggagtattt acggaaaggt tggccggacc gcttggagaa      3900
     acgattccas ggcgtttact cgcatcacca gggccttgaa atagtggacg gctgcttgct      3960
     cttcaaagat agagtcgtca ttccggattg catgaagaga gaggttttga agttgctcca      4020
     tagaaatcac tccgggatgc ataagattaa gcaactcgcc agacggaccg tgtattggtt      4080
     cggaatgaac ggagatattg agcagtttgt ccgatcttgc cgagtatgcc aggaaactac      4140
     tgctttgtct aaacgtgctc cgtacacacc atggattcct acgaagaaac ctttcagccg      4200
     catacatgct gattttttct tttttgagaa aaaggtgttc ttggtaattg tagatagcta      4260
     caccaaatgg gtcgaggttg agcagatgaa aaccggaact gacagtaaaa aggtgatcaa      4320
     agtttccctc ggcgtttttc ctaggtttgg tttaccggac gtcctagtaa ctgacggagg      4380
     tccgccgttt aattctgagc acttcgtcaa cttttttaag gaacagggtg tagttgtcat      4440
     gaaaagtcca gcttatcatc cggaaagcaa cggccaggca gagcgaatgg tgcgcttagt      4500
     taaggatgtc ctgaaaaagt tcctgctcga cccagaaacc aggaaattgg atatggaaga      4560
     acaaatttca tattttctta tgaattacag gaacatttgc ttagcttctg acggtgcctt      4620
     tccctctgaa cgccttctct cctacagacc aaaaacaacg ctggatttaa ttaacccgaa      4680
     gcacagtttt aagtacaatt tgacagaacc ggatgatggt gaccagcgtg catgttcctc      4740
     taaaactgac aaaactcatg acctgttaac taacttgcgt aatggagatt tagtatttta      4800
     caaaaaccca gaaacaaaac tgacattaga caatggttac ctgcaaaata tctaatgcac      4860
     atctctccca acgttttaca gatttcactg agcggccgga tcgtttcggc gcataaacgc      4920
     cagctaaaga tccctcaaga ctctcgccgt ccacatgccc gtcgttttgt tttgaatgga      4980
     gagagtccga cacagccctc aacagagcca agcaacaaca ttgagtcacg caacagcaac      5040
     aaacgaaaaa gagatgagga agacttgtct gaggattccg attcagactt ttacggcttc      5100
     gctgccgact cctttttatt cgaggagttt tcccggttgg atcggcaatc ctatcagaat      5160
     gttgaatcgt tggaccctgc aacggcctct aatcagcagg ctatcgaagc tttccctgag      5220
     gatgttcgac ccacttcaag tgctacagtg aataggcata gtaagagaaa gaacaagaag      5280
     cgaagattac aagattttgt ttattactga gttcattcag ttttcgattg cttaagcatt      5340
     aatttttaaa aatcgtttgt tgacattttg agcattaaat ttcaatttgt gaatttgatc      5400
     ttgcattctg aaagttgtaa aatagcaagt aaggttgaaa atgaatttga ttatgcgttt      5460
     ataagactgt agcatgtttc tactttcagg gggaaggagc                            5500
//
ID   Gypsy-137_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-137_AA_;
KW   Gypsy-137_AA-I; Gypsy-137_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-202
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1008-1008 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 202 BP; 63 A; 40 C; 44 G; 55 T; 0 other;
     tgtaatggca tgagccatgc ggtaaaaccg ctgaacccgc tggaagggtt ctcagcctta        60
     agctgagtac actgagtgta aagtagggtc ttgtgaggaa attatcagaa gaataaacag       120
     ttgttatttt actgcgaact gaaacacacg tctttaccag ttaataccga aagtctttaa       180
     acccggtttt ccacatatta ca                                                202
//
ID   Gypsy-138_AA-I repbase;    DNA;    INV; 4405 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-138_AA_;
KW   Gypsy-138_AA-LTR; Gypsy-138_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4405
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1009-1009 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3356-3823] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           230..3859
FT                 /product="Gypsy-138_AA-I_1p"
FT                 /translation="MTEEDNTKHVVAGPSGSVKIAMNFGSFDNYVAGDDFE
FT                 VYEERMLQHFLLHDIPEGRKVAFLLTHLGMDTYAILKKLLQPVNPSTKTYA
FT                 ELVAALKKHFRPDVNKVSERYRFHQADQKAGQIVSEYVVELKALAEKCEFG
FT                 DFLTEALRDRFVFGIYDSRLRTHLLKQKNLTFEKAVDEALNWELAEKDNKV
FT                 RENVLSAHVVRSGKSYRSRSKSRSKFANSNGGQKNQYGRRRVCEKCGRDHE
FT                 QGKCPAKSWKCFACGRQGRAANVCFSKNSKQNRSGSQDSRRNQTVGTVGAG
FT                 EDLATEIANLRMQLNSVKNETLLVKSKEATETLFVDNRPIEFEIDSGACAT
FT                 VISDSLYRKWFSSRPLFSINDDFSTVTGQGIKVIGGFSADVSKCQRGPSEK
FT                 LALVVIESSKTFRPLLGRTWMDVLWPGWRNKFKESIVSMNRVESTLLDSIR
FT                 LKYPNVICDDNTPIREFEAEIVMEDNVSPIFHVAYSPPFQQRPAIEAELNR
FT                 LCQENILKKVAFSKWASPIVVVPKPNGSLRLCIDCKVTINPYLRSEHYPLP
FT                 RIDDIFAKFANCNFFCVIDLRGAYQQLKVSENSQAYLTINTHIGLFQYVRL
FT                 PFGVATAPSIFQSIMDQILGDIEGCVTYLDDVLIGARTLEECKQVLDKVLE
FT                 RLSRFNVKINTEKSKFFVTSVDYLGHTVSSDGIRPNQSKVTAIVNAPAPTN
FT                 ISELQSYLGLLNYYSKFIPNISSELRVLYRLLRKDVVFSWDSDCEKCFVRS
FT                 KELILKNNVLQLYDPNKPIVVAADASPYGVGAVLSHIVDGEEKPVIFASCT
FT                 LSPAEKNYSQLHREALAIIFAVKRFHKYIYGHRFKLVSDCEALKEIYHPRK
FT                 GTSVISASRLQRWAVILSMYDYEWEYRPSRNLAHADALSRLPVSGGTEIEE
FT                 LSINRLQECPELPLKTCDVAEFTAKDDVLSKVYDYVLYGWPRKIPDSLHYY
FT                 YKLRNSLSCQDNCLFYGDRVVIPDRLQKIVLKMLHTNHDGIVRGKMLGRGL
FT                 FWWKGMQKDIEEHFKQCSVCDQRRSVPKEKVTSKWTSCTRPMERIHIDFFE
FT                 FEGKMVLLIIDSFTKFIEARVMNRTNAEQVNERLEDFFKFVGLPEQMVSDN
FT                 GPPFSSFEFVQYWESRNVKIIKSPVYHPQSNGAAERGVQTVKNFLKKRLLE
FT                 KQGNRELLSRKLNDILAWYNSTPSTATEKSPSEMIFRFKPRTVLTSINPKT
FT                 "
XX
SQ   Sequence 4405 BP; 1392 A; 745 C; 1097 G; 1170 T; 1 other;
     aaagttggcg acgaggtaaa gtggagagtg tagtgacgat cgacgaaagt gtacctaccg        60
     catggcgaaa atcacgtgga gcgcagaaac ggagtgaggt taagtgctac cgtttgttca       120
     gtgcacaata ggctgatata caaaagcgta tccagttttg aagagcacgt ggtatcgcga       180
     aacgaagtgt gttattgcta tcgtttgatc agtgtggaac cttccaaaga tgaccgagga       240
     agacaatacc aaacacgtgg tggccggacc gtccggtagt gttaaaatcg cgatgaattt       300
     cggatcgttt gataactacg tcgcgggtga tgactttgaa gtgtatgagg aaagaatgct       360
     tcaacacttt cttctgcatg acattccgga aggcagaaaa gtggcgtttc ttttaacgca       420
     cctcggaatg gacacgtatg ccattctgaa gaagctattg cagcccgtga atcctagcac       480
     taaaacgtac gcggaattag tagcagcgct caaaaagcac tttaggccgg atgtgaataa       540
     ggttagtgag cgatatcgat tccatcaggc agatcagaaa gcgggtcaaa tagtgtcgga       600
     atatgtggtc gagttaaaag ctctcgcgga gaagtgtgaa ttcggtgatt ttttgacgga       660
     agccctccga gacaggttcg tgttcggtat atacgacagt aggctccgta cccacctgct       720
     caagcagaaa aacctaactt tcgaaaaagc ggtggatgaa gcgttgaact gggaattagc       780
     cgaaaaggat aataaagtgc gggaaaacgt gttgagtgcg cacgtggtgc gatctggtaa       840
     gtcataccgg agtcgtagca aaagtcgttc gaagttcgcg aatagcaatg gcggtcagaa       900
     aaatcaatat ggccggcgaa gagtgtgtga aaagtgtggt agagatcacg aacaagggaa       960
     gtgtccagcg aaaagttgga aatgttttgc gtgtggcagg caaggccgtg ctgcaaatgt      1020
     gtgcttttcg aaaaattcga agcaaaatcg tagtggaagc caggattcga gaagaaacca      1080
     gaccgtaggc acggttggtg ctggtgaaga tttggcaaca gaaatagcaa atcttcggat      1140
     gcagttgaat tcggtgaaga acgagacctt gttagtgaag agcaaggaag caaccgaaac      1200
     gttatttgtg gacaaccgac cgattgagtt tgaaattgac agtggggcat gtgctacagt      1260
     gattagtgac agtttgtacc gaaagtggtt ctcgagtcgt ccgttgttca gtataaacga      1320
     tgatttttca actgtaacgg gacaaggtat taaagtgatt gggggattca gtgcagatgt      1380
     gtccaagtgt cagcgtggtc cgagtgaaaa acttgcgcta gtagtgatcg aaagcagcaa      1440
     aaccttcaga ccgcttctgg ggcgcacgtg gatggacgtc ctctggcccg gatggaggaa      1500
     caagttcaag gaaagtatcg tgagtatgaa ccgtgttgaa agtaccctcc ttgattcgat      1560
     tcgtttgaaa taccccaatg tgatttgtga cgataacact ccaattcgtg agtttgaggc      1620
     ggagattgtc atggaagaca acgttagccc tattttccac gttgcttatt caccaccctt      1680
     tcaacaacga ccagcgattg aggctgagtt gaatagattg tgtcaggaaa acattctgaa      1740
     gaaagtcgcg tttagtaagt gggcttctcc catagttgtt gtgcctaagc ccaatggcag      1800
     cttgagactg tgcattgact gtaaggtaac cataaatcct tatttgcgtt cggaacatta      1860
     cccgttaccg agaatcgacg acatttttgc caagtttgca aactgtaatt tcttttgcgt      1920
     tatcgatctt cgtggtgcgt atcagcagtt gaaagtttcg gaaaactctc aagcgtatct      1980
     aacaattaat acgcacatag gactttttca gtatgtgcga ttgccctttg gcgtggcgac      2040
     tgctccatcg atcttccaaa gtatcatgga tcagatctta ggagacatag aaggatgtgt      2100
     aacgtattta gacgacgtgc tgataggagc aagaacatta gaagagtgca aacaagtttt      2160
     agacaaggtg ctagaacgtt taagcagatt caacgtgaaa atcaataccg aaaagagcaa      2220
     gttttttgta acgtctgtgg actatttggg tcacacagtt agtagcgatg gaattcgtcc      2280
     aaatcagtcc aaagtaactg caattgtgaa tgcaccagct cctacaaaca ttagtgaatt      2340
     acaatcgtac ttgggactgt tgaattacta ttcaaagttc attccgaaca tctcttcaga      2400
     gttgagagtt ctgtacagac tattgagaaa agatgtagtg tttagttggg atagtgattg      2460
     tgagaagtgt tttgtgagaa gcaaagagct gattttgaag aacaatgtgt tgcaactcta      2520
     cgatccaaac aaaccaatcg tggttgcagc ggatgccagc ccatatggcg taggcgctgt      2580
     gttatctcat attgtagatg gagaagaaaa accagtcatt tttgcctcgt gtacattatc      2640
     gcctgctgag aaaaattact cgcagcttca tagggaagct ctagccataa tatttgctgt      2700
     gaagcgtttc cacaaataca tttatggaca tcgttttaaa ctcgtgtcag attgtgaagc      2760
     gttgaaggaa atttatcatc ctcgtaaagg aacatcagtg atttcagcat ctagacttca      2820
     acgttgggca gtgattttgt ctatgtacga ttacgaatgg gaatacaggc caagtaggaa      2880
     tttggctcat gcagatgcat tatccagatt acctgtgtca ggtggcacag aaattgaaga      2940
     actgtccatc aatagattgc aagaatgtcc agaattaccg ttgaaaactt gtgatgtagc      3000
     ggaattcaca gcgaaagatg atgttctttc gaaggtatat gattatgttc tgtatggatg      3060
     gcctcgaaaa atcccagatt ctttgcacta ttattacaaa ttgcgtaatt cgttaagttg      3120
     tcaagataat tgcttgttct atggtgatcg agtagtgatt ccagataggt tgcagaaaat      3180
     tgtgcttaaa atgcttcaca ctaatcatga tggaatagtt agaggaaaga tgttaggtag      3240
     aggattattt tggtggaaag gtatgcaaaa ggacattgaa gagcatttca aacagtgttc      3300
     agtgtgtgat cagagacgaa gcgttcctaa agaaaaggta acatctaagt ggacaagttg      3360
     tacgcgtcca atggaaagga tccatataga cttttttgag tttgaaggca agatggtgtt      3420
     actgattata gattcattca caaagttcat tgaagcaaga gtgatgaata gaaccaatgc      3480
     agaacaggtt aacgaacggt tagaagattt tttcaagttt gtgggattgc cagagcaaat      3540
     ggtatccgat aacgggcctc cgttcagttc gtttgagttt gtgcaatatt gggaatcgcg      3600
     taacgttaag attatcaaat ctccagtgta ccacccacaa tcgaatggtg ctgctgaacg      3660
     aggtgttcag accgtgaaga actttttgaa aaagagattg ttagagaaac aaggcaatag      3720
     agaactatta tcaaggaaac tgaatgacat tttagcttgg tataatagta ctccttcgac      3780
     agctactgag aagtcaccca gtgagatgat tttcagattc aaacccagaa ctgtattgac      3840
     aagtattaac ccgaagacaa gmtcatgtga gacagggaca gataaggtca atcgtaagag      3900
     cgtaacgttt gatgaatcca aaaatgcaga atatgtttat gatgtcaaaa agaaaaattg      3960
     tttgaaagaa aattgtaacc ccaaccaaga ttttaaaaaa ggggaaaagg ttatgtaccg      4020
     aaaccatttt aaagaattag tgagatggat tccagcaatc attcttgaga gaatcggaaa      4080
     atttttgtat aaaataaagt tgttggagaa cgatagtatt aaaaatgttc atgtaaacca      4140
     gttaagatat ccaagctcaa ttgtaaaaac gaatattgca aaagtgccag aacgatcatc      4200
     agaaaatata actattaagc gtaggcgtag tgaatcgtta ggtgaatcac cacctagaaa      4260
     atttcaagct gatgagagac aaaatcgatg cggatcaaat gaatcaattt tcctcagaag      4320
     atcagtaaga accagaaagt taccagagtg gtttagattt gaagattatg aaaggtagta      4380
     gtaagaaatc aaaaaagggg aaagt                                            4405
//
ID   Gypsy-138_AA-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-138_AA_;
KW   Gypsy-138_AA-I; Gypsy-138_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-274
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1010-1010 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 274 BP; 96 A; 54 C; 49 G; 75 T; 0 other;
     tgttatgtat ctagatatca caatgtaact catcgatatt gatctaggga agaaactcag        60
     cgataattaa tatccgctaa tgttagatga ggatccaatc aggcaacact attgaaagac       120
     tataaaagct atcagagata ttgtgtagct ctcttttatc tattgctctt cgagcgaaca       180
     acaccgttgt aagtatagtt ggtaagaata aataagtgaa accaacaacg cgtgtgaaag       240
     ttactcccag cctccgaact ccccgaatac aaca                                   274
//
ID   Gypsy-139_AA-I repbase;    DNA;    INV; 6284 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-139_AA_;
KW   Gypsy-139_AA-LTR; Gypsy-139_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6284
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1011-1011 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5196-5675] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1138..2439
FT                 /product="Gypsy-139_AA-I_1p"
FT                 /translation="MEKQVHKLLEELEAIILNFKKAPSRRYLKQTLVSKGK
FT                 RAREIYEDILYLVEDFPQTQQKLLLSEARNLFSKIKITIDTRLDTATGRLI
FT                 KLKTVTHLVVFFNSLYKKHEKMAVPKVDLKLGTSIIPIYDGNQEGLGAFID
FT                 SVRLFEDSVNTDFNTATADQKAAALATLIRFIKTRLTGKARAAVGDNSPTI
FT                 NDIIDKLKDKCGLATSPDVYISKLNHIKQTGDINKFTTEVENLTLLLERSL
FT                 VTDNIPLDVASKMATKQGVEALCSGVRNNDTKLILKAGQFSTLSAAILKAT
FT                 ENEPIATTHINQIMFTNRHGYKKHYGNSNSNRQGGHENYNRNRGNFSNRGN
FT                 YSNFSNRGNFSDYRGQGNYQRNFQNPRFQRGRGSYRGNTQSRIFYANTDNE
FT                 QNAPPTPTQNRQNNRTQQPNIQPNTQQQPNFLGQLQRYTQ"
FT   CDS           2481..6020
FT                 /product="Gypsy-139_AA-I_2p"
FT                 /translation="MSNSTCTFMVDSGADVSIFKLNKVRNNQLLHQDQKCM
FT                 ISGISGNKIETLASTTTRLTFQNSFTLEHEFQLVDEQFPIFTDGILGRDFL
FT                 AKFRCTIDYESWTLNFRHNNEEVNIPIEDNLNEGIILPERSEVIRNLNYLN
FT                 ITEDMLVCSQEIQPGIFCGNTLASPSAQYVKFINTTDKPALIRPFTPMMIP
FT                 LKNFIVAKIDKNNNVPTRVEKIKQKISVSNLPLTAMKPFETLIEEYNDIFA
FT                 LGEDNLTTNNFYTQNIELSDSVPVYIPNYRSIHAHNEEIESQVKKMLDNKI
FT                 IEHSVSAYNSPILLVPKKSSTNEKKWRLVIDFRQLNKKILADRFPLPRIDT
FT                 ILDQLGRAKYFSTLDLMAGFHQIPLDSNSRRFTAFSTTSGHYAFTRLPFGL
FT                 NISPNSFQRMMTIAMAGLTPECAFVYIDDIVVIGCSINHHINNLKRVFDRL
FT                 RRYNLKLNPEKCQFFKTEVIYLGHKITDQGILPDDSKFEVVKNYPKPTNAD
FT                 DIRRFVAFCNYYRKFIPKFAQIAKPLNNLLKKNTTFSWNEDCQTAFETLRN
FT                 KLLSSSILKYPDFSKTFTLTTDASNIACGAVLSQDYDGNDLPIAFASKAFS
FT                 NAESKKPTIMQEMIAIHWAIDHFKPYLYGRKFIIKTDHRPLVYLFGMKEPT
FT                 KKLTQMRLDLEDYDFEIHYIKGRDNVGADALSRIVTSEEIKNNNILMVHTR
FT                 AMTKKQQGHDKNHIVSPKEKIDHLLVYETESPAEIRKLQKMSISMQQNMIV
FT                 IKIMNQNMKKTLITLEQDIIHENESQTLEFALSEMNEILRNKKIAMSTNNE
FT                 ILTHIPLQHFKRIALDVIRNFELILYRPPKELTNSEEIDNILHDFHMTPTG
FT                 GHIGQNRLYLKLRDLYYWKGMRTTIIKFVKACKLCKINKVTRRTKEASVVT
FT                 TTPAKPFEIISIDTVGPLPRTIKNNRYCITLQCDLTKYIIIIPLENKEADT
FT                 IARALVQNFILNYGTFLELRSDQGTEFNNEVLKKISKILNFKQNFSTAYHP
FT                 QSIGALERNHRCLNEYLRNFSNVHHNDWDEWTKFYEFSYNTTIHTDTEYTP
FT                 FELVFGRKAKLPQDMRKFSTEPIYNLDEYYSELRFKLQKSSEIARKNLIEQ
FT                 KTKRTNELNKNLNPINVAIGDLVYITNENRKKLEPHYIGPFKIKHIDDMNC
FT                 TIVNINNKKENKIHKNRIIKM"
XX
SQ   Sequence 6284 BP; 2472 A; 1153 C; 1043 G; 1616 T; 0 other;
     tggcgaccgg actaatcgga acctacaagg ccctggagga cgcatagaag ccaacggaag        60
     caccggaaca gcaaatcgca gagcacgccc cggagggaac cttaacacgg gcgatcccgt       120
     ataagcaacg atatcaacgg acaacagacc aaaagcagcc tgttagggtg atagagcagc       180
     tttctccgtt aatccgccaa tccgtctcca gaaatacgct aattatcgct aaagcaaatg       240
     aaaaacggat aaaaacatac gaaatacaaa aggaagatgg gaagttcaga atcccgagag       300
     gaaatagtgg tccgcagcag cagcagcagc agcagcaaac aggacaacag caacagtcat       360
     taccggtggc atcaggaatt ggtccagtac acgtaatcgc tacatgcatg gtgattatta       420
     tcgctgcact attattgcga gttatctggc aaattctaat gcgagagatt gaaaaccgca       480
     gccgtcgttc tcctacagtg gcaaccattg tgtaaaaaaa aaaaaaaaac actcaagaac       540
     atcagcaaca gaaacgtgat tatgtgagaa aaaaaaaact acgtcgtgtg aaaataatgg       600
     ataaactcag tctttcccta ttcatgacag cagcaatttt agaactagtg acattctata       660
     gcctttttat gtggctaaca aactattatc taagtgaata agagaacaga cgaaaatggt       720
     aaaacaaaga gtgtccaatg tgcaggcata tcatagcctg acacttagtg cagtaagtga       780
     aaaaagagaa catttaaaaa aggtttttcg taatgaaaaa gaaaaacaac cgaaacgaga       840
     taaaggacaa tcagaagcga aaaaatcaaa ctctatgaaa tcaaaacaac ctattcaaat       900
     cgtaaaaatt gaaaacgaga ctcaacaaaa catcgtacag tggggaaaac aagttaaggt       960
     ggacgtagaa aaagtaaagg cactggctgc caaactcaaa accactatga agaaaccagc      1020
     cacaaggatt cgttaccaag gctgagtaac agcacaactc atcataagca acaacaacga      1080
     gcgtagagga gagcgcctcc gccgtagtac cacaggtaat taccttaaaa ttccttaatg      1140
     gaaaaacaag tgcataaact tcttgaagaa ttagaagcaa tcattttaaa ttttaaaaaa      1200
     gctccttcaa ggagatattt aaaacaaaca ttagtctcaa aaggaaaaag agctagggaa      1260
     atttacgagg atatcttata tcttgtagaa gattttccac aaacacagca aaaattgcta      1320
     ttatcagaag ctaggaatct ttttagtaaa ataaaaatta caattgatac gcgcctggac      1380
     actgcgacag gccgcttaat aaaactaaaa actgtaactc atttggtcgt attttttaat      1440
     agtttatata aaaagcacga aaaaatggca gttccaaaag ttgatttaaa attgggaaca      1500
     tcaattatac caatttatga tggaaatcaa gaaggattag gagcgtttat cgactcagtc      1560
     cgactttttg aagattccgt taatacggat ttcaatacgg caactgctga ccaaaaagca      1620
     gcagctctag caacactgat aagatttata aaaacaagac ttacaggaaa ggctagagca      1680
     gccgttgggg ataactcacc aacaataaac gatattattg acaagttgaa ggataaatgt      1740
     ggtttagcca catctccgga cgtttacata tcaaaattaa atcatataaa gcaaactggt      1800
     gatattaaca aattcaccac ggaagttgaa aatctaactc ttcttctcga aaggtcacta      1860
     gtaaccgata acattccatt agatgttgct agcaaaatgg ctacaaagca gggcgtcgaa      1920
     gctctctgct caggcgttcg taataacgac accaagctta ttttaaaagc cggacaattt      1980
     tctacactgt ccgcagcaat attaaaagca acagaaaatg aacctatcgc aacaacacac      2040
     ataaatcaga tcatgtttac taaccgccat ggttacaaaa aacattacgg aaactccaat      2100
     agcaatcgtc aaggaggcca cgaaaactac aatagaaatc gcggaaattt ctccaatcgc      2160
     ggaaattact ccaattttag taatcgcggg aatttttccg actaccgtgg tcaaggaaat      2220
     taccaacgta atttccaaaa cccacgtttc caacgcggta gaggatcgta tcgtggtaac      2280
     acgcaatcac gtatcttcta cgcaaatacc gataatgaac aaaatgcacc accaacacca      2340
     acacagaata gacaaaataa ccgaactcaa caaccaaata tacaaccaaa cacacaacaa      2400
     caacctaatt ttttaggaca acttcaaaga tatacacaat aaatacatca gcttcaaact      2460
     tcattgaggc acgtgttaga atgtctaatt caacatgcac ctttatggtt gattctggag      2520
     ctgacgtttc tatatttaaa ctgaacaaag ttcgaaataa tcaactatta caccaagatc      2580
     aaaaatgcat gatctcaggt atatctggaa ataagattga aacccttgca tcaacaacaa      2640
     ctcggcttac atttcagaat tcatttacat tagaacacga attccaatta gtagacgaac      2700
     aatttccaat attcacagat ggcatactag gccgagactt tttagcgaaa tttcgatgta      2760
     ccatagatta tgaatcatgg acattaaatt ttagacacaa caatgaagaa gtaaatatcc      2820
     caattgaaga caatttaaat gaaggaatca tactccccga acgaagtgaa gttataagaa      2880
     atttaaatta cttaaatata actgaagaca tgttggtatg ttctcaagag attcagccag      2940
     gaatcttctg cggaaacaca ttagcatcac cttcagcaca atatgtaaaa tttataaaca      3000
     caactgataa gcccgcatta atcagaccat tcacacctat gatgatacct ttaaaaaatt      3060
     tcatcgtagc aaaaattgat aaaaataata acgttcctac acgagttgaa aaaattaagc      3120
     agaaaataag tgtttcaaat ttacctctaa ctgccatgaa accttttgaa acccttatcg      3180
     aagaatataa tgatattttt gcattagggg aagataattt gactacaaac aatttctata      3240
     cgcaaaatat cgaattaagt gacagtgtgc ctgtttacat tccaaattac aggagtattc      3300
     atgcacacaa tgaagaaatt gaatcccaag ttaaaaaaat gctagacaac aaaattatcg      3360
     aacattctgt atcggcttac aattcaccaa ttttattggt acctaaaaaa tcgagcacaa      3420
     atgaaaaaaa atggaggtta gtaatagatt tcagacaatt aaacaaaaag attttagctg      3480
     accgatttcc gcttcccagg attgatacca tattggatca gttagggaga gccaaatatt      3540
     tcagcacatt ggatttaatg gcaggattcc atcaaatccc tcttgattct aattccagaa      3600
     ggttcaccgc attctcgaca acctctggac attatgcttt tacgcgttta ccatttggac      3660
     taaatataag tccaaatagt tttcaacgca tgatgacgat tgccatggca ggtttgacac      3720
     ctgaatgtgc attcgtttat atagatgata tagtggtaat cggatgttcc atcaatcacc      3780
     acataaataa tttgaaaaga gtctttgaca gattgagacg ttataattta aaactcaatc      3840
     cagaaaagtg ccaatttttt aagacagaag ttatatattt aggacacaaa attacagatc      3900
     aaggtatact accagacgat tcaaagtttg aagttgttaa aaattatccc aagccaacaa      3960
     atgcagacga cattcgtcga tttgttgcct tttgtaatta ttataggaaa tttatcccaa      4020
     aattcgcaca aattgctaaa cctttaaata accttctaaa gaaaaataca acattttctt      4080
     ggaatgaaga ttgtcaaaca gcttttgaaa ctcttcgtaa caaattacta tcctcatcaa      4140
     ttttgaaata tcctgatttt tcaaaaacct tcacattgac aacagatgca tccaacattg      4200
     cttgtggagc agtattgtct caagattatg acggaaatga tttgccaatt gcttttgcga      4260
     gtaaagcatt ttctaacgct gaatcaaaaa aacctacaat tatgcaagaa atgattgcta      4320
     ttcattgggc aatagatcat ttcaaaccat atctgtacgg aagaaaattt attatcaaaa      4380
     cagatcatcg ccctctagtt tatctttttg gtatgaaaga acctaccaaa aagctaacgc      4440
     agatgcggtt agatcttgaa gattatgact tcgaaataca ttatataaaa ggaagggata      4500
     atgttggtgc agatgcatta tccagaatag taacatcgga ggagataaaa aacaataata      4560
     ttcttatggt acatactaga gctatgacca agaaacaaca aggacatgac aaaaaccata      4620
     ttgtttcacc aaaagagaag attgatcacc ttcttgtgta tgaaacagaa tcgccggcag      4680
     aaataagaaa attacaaaaa atgagtataa gcatgcaaca gaatatgatt gtaataaaaa      4740
     taatgaacca aaatatgaag aaaacattaa ttacacttga acaagatata attcacgaaa      4800
     atgaaagtca gacgctagag tttgctcttt cagagatgaa tgaaatatta agaaataaaa      4860
     agatagcaat gtcgacaaat aatgaaatct tgacacatat accactacaa catttcaaaa      4920
     ggattgcttt agacgtcatc cgtaatttcg aactaatact ttaccgacct ccaaaagaat      4980
     tgacgaattc tgaggagatc gacaacatat tacacgattt ccacatgact ccaacaggtg      5040
     gtcatatagg acaaaaccgg ctatacctta aactcagaga cctttactat tggaaaggca      5100
     tgagaaccac aattataaag tttgttaagg cctgcaaact ttgtaaaatt aacaaagtaa      5160
     cgagacgaac gaaagaagca tcagtggtaa cgacaacacc tgccaagcca ttcgaaatca      5220
     tttcgattga cacggtaggt ccgttgccac gaacaattaa aaataatcgg tactgcatta      5280
     ctttgcaatg cgatttaact aaatatatta taattatacc gctagaaaat aaggaagctg      5340
     ataccatagc acgcgctttg gtgcagaatt ttattttgaa ttatgggaca tttttagagt      5400
     taaggtctga tcaaggtaca gagtttaata acgaagtcct caagaaaatt agtaaaattc      5460
     tcaattttaa gcaaaatttt tcaacagcct accatccaca gtcaataggt gctttagaga      5520
     ggaatcatag gtgcctgaac gaatacctaa ggaatttctc caatgttcac cataatgact      5580
     gggatgaatg gacaaaattt tatgaatttt cgtataacac cactatacat actgataccg      5640
     aatacacgcc atttgagctt gtgtttggta ggaaagccaa acttccacaa gatatgagaa      5700
     aattttcaac tgagccaata tataatttag acgaatacta ttcagaatta agattcaaac      5760
     ttcaaaagtc aagtgaaata gcccggaaaa atttgattga acaaaagaca aaaagaacta      5820
     acgaacttaa caaaaactta aacccaatca acgttgcaat aggagattta gtctatataa      5880
     caaatgagaa cagaaaaaaa ttagaaccgc attatatagg accattcaaa attaaacata      5940
     tagatgacat gaattgtaca atagtaaata ttaataataa aaaagaaaac aaaattcaca      6000
     aaaaccgaat tataaaaatg taaaaatcat ttactttaaa cccaagaatg cgaaccccta      6060
     tgtttttccc atatatatat gctaaataat aagacgctat acaaaaaaaa aacttctaaa      6120
     tattttttta ttagttcttt tgataatgta ggcataggaa taaaaaaaaa tctctaacaa      6180
     aaacaaaaat atataaaaaa ttgtaataat aaaaatatgt taaagtcttt tggagtgata      6240
     gctagtcaga atgtttaaca acattctcct ttaaaggggg gagg                       6284
//
ID   Gypsy-139_AA-LTR repbase;    DNA;    INV; 429 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-139_AA_;
KW   Gypsy-139_AA-I; Gypsy-139_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-429
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1012-1012 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 429 BP; 124 A; 107 C; 85 G; 113 T; 0 other;
     tgtggtgtac ttgtgaaaac atgtgcccat gcgcaatatt taaattcggt gctaacacat        60
     agcacctacc aaatagttat gcttacgcgc gcgaaagact gcatcgaacc gtcgccccat       120
     tgggggcaca gttcgattgc aatatgttcg tttgctatga gccatccact tgatggactt       180
     taattgtcac gcgctgacca aagcacaaat cactccagaa gtcttccgat agaccctatg       240
     taattgtaaa atgtagtgcg acacttttga agtgctggac gggtataaaa tacccctgac       300
     cagccaaata caggcagttc cattcgatgg tctcagatca tcacttaatt gagcctttta       360
     attaagtaaa atatcaccgc catcccggat ccaccactaa gtctactagt aggcaagtag       420
     cctacctca                                                               429
//
ID   Gypsy-13_AA-I repbase;    DNA;    INV; 4263 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_AA_;
KW   Gypsy-13_AA-LTR; Gypsy-13_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4263
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 995-995 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3316-3792] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..4239
FT                 /product="Gypsy-13_AA-I_1p"
FT                 /translation="MTSDSKSNPFQAASVQKMATVGRMDPFIPGEDFDVYI
FT                 KRLRMYFIANGIPENLKAAVLMTVMGNETFQILDSLFSPEDPCTKTFDQIV
FT                 EKLKNQFKPMVIVSAERYKLYTRKQKVNEPIAEYVVALKHLAQSCSFGNFL
FT                 ADALRDAFIIGIHDQKIRKRLLSEELDFDKAYKIAAGMELADAEEMNLKIE
FT                 SGLNHVVSGKKNVSVRSVKRGSAISRETIDEHRAKYCTRCGRSNHAVNQCP
FT                 AANVLCYKCRLRGHFANQCRTRNVHLIQDNDEEEFVDETVDLISWVAEGNE
FT                 PLLVPVHIEGKEVIMEVDSGACKTIISENEYREKFYHVTLKQEPKSFQVIT
FT                 GQKFRPLGVGEFKVNMPNSNCQITLEMSVIRSDFKFKPLLGRSWLNVLYPG
FT                 WKNRIISQERNSVHTVENAQTDKVMTNGKREIVDYQGLVRREQVLGENKVN
FT                 FLKALQEHFPRAFSEDNSEPIEEFEVDIVLKEHTPVFHKAYELPFKMREPV
FT                 EKELERLVADGILKPVKHSRYASPIVAVPKSDGKSIRVCVDCKRTVNPFVE
FT                 TEHYPLPRIDDILASFPGCKVFCVLDLKGAYQQLALSEESKKYLTINTHKG
FT                 LFQFQRLCYGVSSAPSIFQQVIDQILRGLKFVKSYIDDTLIGGKNFAECFE
FT                 NLKRVLDRLNKYNVHINLEKCEFFLPQVDYLGHTLSEKGISPNSDKIKAIV
FT                 EAPSPSNCAQLQSYLGLLNYYSRFLPNASSLLRPLYDLLKKDTTFHWTEIH
FT                 ERAFKDSKRLLLSNNLLEMYDPDKKIIVSCDASPYGVGAILSHEINGEQKP
FT                 IIFASSTLSAAEQNYSQLHREALAIMFAINRFHKYIYGYKFELHTDHEPLQ
FT                 AILNPKKCKSAIAVARLQRWAIQLSMYNYVVKYKPSSKMRHVDALSRLPLT
FT                 DDTKVDFVKSLNVSNDIPIDLEMVRKSSETDPLIKMLMKFCRSGWARTKQF
FT                 DPELKYYHKLQQCFAVENDCLVYRDRVVIPKEMQIKILELLHEGHIGIVRT
FT                 KMLARQYVWWRNIDNDIEAFINHCSVCQQTQKKASSVTIPWPTPKTVLERV
FT                 HLDLFYFGKYSFLIIVDAFSRWIEVCLLKTSNARTIIDNMRKFIVTFGLPK
FT                 EIVSDNGPPFNSANFIDFCIRQGIKTTKSPPYHPESNGLAERGVQTTKAAL
FT                 KKFLLDHKYRKLTIDEQVDNFLFKYRNTPNAVSGISPAEMMFSFKPKTLID
FT                 KLSIKSDKLENVQCKREKEKVTSTKIKHFVKGEKIMYMNHFKNFCKWIPGR
FT                 VVDKLSQALYRIEISGNVRIVHVSSIRKSNLHDKYHPNVSVARSTQVQARP
FT                 HRVVLKKNIGSTKHSSQTKWSDFSKLRRSQRKRKPPVFYRC"
XX
SQ   Sequence 4263 BP; 1455 A; 701 C; 905 G; 1202 T; 0 other;
     agctctataa aagcgcaggt caatcttgta caggtctctt ttaagttctg gacatctatc        60
     aataaacact aattgatagc agcgcatctg tgttttgtaa gtataaatcc gaaacatatt       120
     agttggcgac gaggatagtg caaccattcg tgtgcaaata cacgtgtgtc gtgtgaagca       180
     atgacaagtg atagtaagtc gaatccattt caagcagcaa gtgttcaaaa aatggctaca       240
     gtgggccgga tggatccgtt tattcccggt gaagattttg atgtgtatat taagagatta       300
     agaatgtatt tcatcgccaa cggtattccg gagaatttaa aagcggctgt gttgatgaca       360
     gtgatgggaa atgagacgtt ccaaattttg gactcattgt tcagtccgga agatccgtgt       420
     actaaaacgt ttgatcagat tgtggagaaa ttgaaaaacc agtttaaacc aatggtgata       480
     gtgtccgcgg aaagatataa gttatacact cgaaaacaaa aagtgaacga accgattgct       540
     gaatatgtcg tggcgttaaa acatctggca caatcttgta gtttcggaaa tttcctggca       600
     gatgcgctcc gcgatgcttt tattatcggt attcatgacc agaaaattcg aaaacgactg       660
     ttatctgaag aattagactt tgataaagcg tacaaaatag cagccggtat ggagttggct       720
     gatgcagaag agatgaattt gaagatcgag agcgggttaa accacgtggt gtccgggaag       780
     aaaaacgttt cggttagaag tgtaaagcgt ggtagtgcaa tatcaagaga aacaatagat       840
     gaacatcgtg caaaatattg tactcgatgt ggaaggtcta accatgcagt gaatcagtgt       900
     ccagcagcta acgtattgtg ctacaaatgt agattgcggg gtcatttcgc aaaccagtgc       960
     agaacaagga atgttcattt gattcaggat aacgatgaag aggaattcgt agatgaaacc      1020
     gtcgatttga tcagttgggt agccgaaggt aatgagccgt tacttgttcc ggtccatata      1080
     gaaggtaagg aagtcatcat ggaagtggac agcggtgcgt gtaaaacgat aattagtgaa      1140
     aatgaatatc gagaaaaatt ttatcatgtt accttgaaac aagagccaaa atcgttccaa      1200
     gtcattacag ggcagaaatt taggccacta ggagtgggtg aatttaaagt aaacatgccg      1260
     aacagtaatt gccagatcac tttggagatg agtgtcatac gttcagattt caaatttaag      1320
     ccacttttgg gcagatcatg gttaaatgtg ttgtatccgg ggtggaaaaa cagaattatc      1380
     agtcaggaac gaaatagtgt acatacggtt gaaaatgctc aaacagataa agtgatgacg      1440
     aacggaaagc gcgaaatagt cgattatcag ggattagtac gaagagagca agtgttgggt      1500
     gaaaataaag tcaattttct aaaagcgctt caagaacatt ttccacgagc attcagtgag      1560
     gacaatagtg aaccgataga agaatttgag gtggacatcg ttttgaagga gcatactcca      1620
     gtgtttcata aggcatatga actgccattt aaaatgcggg aacctgtaga aaaagaattg      1680
     gaacgactgg tagcagatgg aattttgaaa cccgtcaaac atagcaggta tgccagtccg      1740
     atcgtagctg tcccgaaatc cgatggtaag tcgatacgag tatgtgttga ttgtaaacga      1800
     actgttaacc catttgttga aacagaacat tatccccttc cacgaatcga tgatatctta      1860
     gctagctttc ccggttgtaa agtattttgt gttctcgatc ttaaaggagc ctatcaacag      1920
     ttagctctgt ctgaagaatc caagaagtat ttaacgatta atactcacaa gggtttattt      1980
     caatttcaaa ggctttgcta tggtgtaagt agtgcacctt ccatttttca acaagttatt      2040
     gatcaaattt tgaggggatt gaagtttgtc aaatcttaca ttgatgatac tttgatcgga      2100
     ggaaaaaatt ttgcggaatg ttttgaaaat ttaaagcgcg tactggatag actgaataaa      2160
     tacaacgtgc atataaatct agaaaaatgt gaatttttct taccacaagt ggattatctt      2220
     ggtcatactt taagtgaaaa aggcataagt ccaaatagcg ataaaattaa agcgattgtg      2280
     gaagcaccta gtccttcaaa ttgtgctcaa ttgcaatcat acctaggatt gctcaattat      2340
     tattcacgtt tccttcccaa tgctagtagt ttgttaagac cactttatga tcttttgaaa      2400
     aaggacacaa ctttccattg gacggaaatt cacgaaagag cgtttaaaga tagcaaacgt      2460
     ctcttattgt cgaataattt attggaaatg tatgaccctg ataaaaaaat aattgtctcc      2520
     tgtgatgcat ctccttatgg agttggagca attttatccc atgaaataaa tggagagcag      2580
     aaaccgatca tttttgcttc cagcaccctg tctgcagcag agcaaaatta ctcacagttg      2640
     catagagaag cactggccat aatgtttgcg attaatcggt tccataaata tatatacggt      2700
     tacaaatttg aattacatac agatcatgaa ccacttcagg ctattctaaa tccaaaaaaa      2760
     tgtaagagtg cgatagcagt agctaggtta caacgatggg ctattcaatt gtcaatgtat      2820
     aattatgtag taaaatacaa accgtcttcg aaaatgcgac acgtggatgc cttatcgaga      2880
     ttacctctga ccgacgacac caaagttgat tttgtgaaat cgttgaatgt ttcaaatgat      2940
     attccaattg acttggaaat ggttcgaaaa tcttccgaaa cagatccact gataaaaatg      3000
     ttgatgaaat tttgtcggtc aggctgggca agaactaaac agttcgaccc tgaattaaaa      3060
     tattatcata aattacaaca atgtttcgcg gtggaaaatg attgtttagt atatcgtgat      3120
     cgcgtagtga ttccaaaaga gatgcagatt aaaattttgg aactattgca tgaaggtcat      3180
     atcggcatag tgcgtacaaa aatgctagct agacaatatg tatggtggag aaatattgat      3240
     aacgacatcg aagccttcat aaatcactgt tcagtttgcc aacaaactca gaaaaaggca      3300
     tcatctgtta cgataccttg gcccactccg aaaactgtcc ttgaacgagt acatttagat      3360
     cttttctatt tcggaaaata ttcgtttttg ataatagtgg atgcttttag cagatggatt      3420
     gaagtttgcc tcctcaaaac atccaacgca agaacgatta ttgataatat gcgaaaattt      3480
     attgtaactt tcgggttgcc aaaagaaata gtgtcagata atgggccacc gtttaattct      3540
     gctaatttca tcgatttttg cattcgacag ggaataaaga ctaccaaatc gccaccatac      3600
     cacccggaat cgaatggttt agcagaacgt ggagtgcaga caactaaagc cgcgttgaaa      3660
     aaatttttgc tggatcataa gtatcgtaaa ttaacaatcg atgaacaagt tgataatttt      3720
     ttgtttaaat acaggaacac accaaacgct gtttcaggaa tatctcctgc agagatgatg      3780
     tttagcttta aaccaaaaac actgatagat aaattgtcca ttaaatcaga taaacttgaa      3840
     aatgttcaat gtaagagaga gaaggaaaaa gtaacaagca caaagattaa acattttgtt      3900
     aaaggggaga agatcatgta catgaatcat tttaaaaact tttgtaagtg gattcccggt      3960
     agagttgtag acaaactttc tcaagcttta tatagaattg aaataagtgg taatgtaaga      4020
     attgtacacg tttcttccat aagaaaatct aaccttcatg acaaatatca cccaaatgta      4080
     tctgttgcaa gaagtactca agttcaagcc aggccacaca gagtcgtttt gaagaaaaat      4140
     atagggtcta ccaagcatag ttctcagact aaatggtcag atttttcaaa actaagacga      4200
     tcacaaagaa aaagaaaacc gcctgtattc tatagatgtt agaaaaatct aaaaggggag      4260
     aag                                                                    4263
//
ID   Gypsy-13_AA-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_AA_;
KW   Gypsy-13_AA-I; Gypsy-13_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-133
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 996-996 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 133 BP; 51 A; 16 C; 28 G; 38 T; 0 other;
     tgaagtgtat tagcttaccc tattatgata gaaactctct tgaaagcgtt atacgtatta        60
     taaagtatat tgaaaagata tctagataag aatgatgaac agggacatgg aggaagaatg       120
     aacttccggt aca                                                          133
//
ID   Gypsy-13_AnFu-I repbase;    DNA;    INV; 4690 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4690
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2898-2898 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           289..1248
FT                 /product="Gypsy-13_AnFu-I_1p"
FT                 /note="gag."
FT                 /translation="MEPNCNQEDLLNHIRFLTNSHNDLLEEMKRLKAKADD
FT                 PYLSYRTPDPVRNLPNFDGNKSETQAWIEDTETALALFKNREGSPMYDQLV
FT                 RAVKCKITGQAREAVIAAGNVSTWPEIKDVLTNAFGDKRDLTSHIQQLFYE
FT                 RQGKKSLAEYYNSLKKLETKIRSITASADEYKNSTTAVHHLIGVITLTRFI
FT                 DGLEGTLSSYVRSCKPNDLDEAYSVSIEYTNASYRRKLEQTNTEERGRKKY
FT                 DNETPSTSYSNRKNTQSDKPWSDKFRNKSFQEKKTNDDVSMRTLKSRMQIN
FT                 NAETDDKTVDNESDELNFHMVLGERSDT"
FT   CDS           1209..4607
FT                 /product="Gypsy-13_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IKFSHGFRRKVRHLNNNNFIPYLQIFTTKGILKFLID
FT                 TGANKNYISPKHVNLENCMSEENVFVRSLKESEKILKSVQFDIFGINRKIK
FT                 FYVYSFHNFFDGLIGYETLRNLNAVLDTRNNTLKIGRKILALHKKFIGNPS
FT                 TTLNALQTHFLTIDTVTDGDFIIEEEKSYGTFSILPGIYTSKGNKSVIALK
FT                 NNTDKNIEINLNEIEIIDNEFLENEGPKVKINKNFELKDDSLAEFELKAIT
FT                 NLLRDIPEVLYFDDDKLSFTHKIKHRIRTVDNIPIHTKSYKYPKIFESEVQ
FT                 DQVKKMLREGIIRESISPYTSPVWIVPKKEDSTGLKKYRLVIDYRKLNEKT
FT                 ISDKYPIPDITEILDRLGRASYFSTIDLVAGFHQVQLDEDDIEKTAFAVSS
FT                 GKYEFTRMPFGLKNAPSTFQRVMDTVLREHIGLCCLVYMDDIIIFSSSFQE
FT                 HVKDIRSILQKLKDARLKINIEKCNFFRKEVQFLGHTVTKEGVKPNVDKIG
FT                 VVQNWPIPKNPKELKQFLGTLGYYRRFILDFAKLIRPLTILLRKDNEFIFT
FT                 PDKVRCFEKCKSLLAMDPILAYPDFSKTFILTTDASDFAIGAVLSQGTVGK
FT                 DRPIAYASRTLNRTEENYCTTEKELLAIVWAVKYFRPYLYGRKFTLITDHQ
FT                 PLIYSMTSANQKIIRWKLVLTEFDFDIVYKPGKENIVADALSRIKPNEIEA
FT                 SKDEINTNNTIHSADTSDDHYIRTTEKPTNTFKTQIILNIGNESESHEEVF
FT                 PTYHRFMIFKRNYSEKQIITIFREKINTKGTNCIHAPKEIIQTIQETYRKY
FT                 FCQYKTFKLVYSPLLVTDVKRTEDQDKLIRETHERAHRGIKENVAQLLESY
FT                 FFPNMEKKVRIVVNNCAICKRCKYDRNPLQLIKKTVCVEKPFEKIHIDIFF
FT                 MKGRKMLTIVDAFSKFANVIPLETRTIIDLKKSITEHIRIFGRPNTIVCDQ
FT                 EPAFISIEFTGFLQDLNIEVHHASCSNSNGIVERFHSTLIELYRTMNSTNS
FT                 ELDFNDKINIIVDIYNNTIHSATGKKPRAIVFNLEGVTNTEEIYQKFKELQ
FT                 SNVKIKLDKQNKKTEGANQNLTEPPALTEGQAVYVKVNQRITKDKEPYKTS
FT                 KVNKNNDLTFVDNYNIKIHKSRLKK"
XX
SQ   Sequence 4690 BP; 1812 A; 837 C; 880 G; 1161 T; 0 other;
     ggcgcagccg aaagtcgaat tgctggtaat aagcataagt catctcatcc cggtttatac        60
     catcactgag cgaatatcag ttgattcgcg gagagaagca gctgttccag ctaacgtccc       120
     aaacacgccg tgctaacgca aaaggaagga agaccatcga cccaaaaaaa aaaaaaagaa       180
     gctctaagcc tcacgcatcg agagaacgca acacacacca atctggactg tgcgtgagta       240
     tagcgtgtaa tagtgagaat agagtgataa tagaaaagaa cgcaaaacat ggagcccaat       300
     tgcaaccaag aagacctgct aaatcacatt cgattcctga cgaactcgca taatgatcta       360
     ctggaagaga tgaaacggtt aaaagcaaaa gcagatgacc cctatttatc atacagaacg       420
     cccgatccag ttcgtaatct accaaatttt gatggaaaca aaagtgaaac gcaagcgtgg       480
     attgaggata ctgaaactgc attggctttg ttcaaaaatc gtgaaggatc gcccatgtat       540
     gatcagttag tacgagcagt aaagtgcaaa atcactggtc aagctaggga agcggtaata       600
     gcagcaggaa acgtgagcac gtggccagaa attaaagacg tgctaacgaa cgcatttggc       660
     gacaaaaggg atctgacctc acacatacaa caactgtttt acgagcgtca gggaaagaaa       720
     tctctagcag agtactacaa cagtttgaaa aaactcgaaa caaagataag gtcgattacc       780
     gcatctgcag acgaatataa aaattcaact acagcagtac atcacctgat tggtgtaatc       840
     acactcacac gttttataga tggacttgag ggaacgttat cgtcgtatgt gaggagctgt       900
     aagccgaacg acctagatga agcctattcg gtatccatcg aatacacgaa tgcttcctat       960
     cggagaaagc tagaacagac taacacagaa gaacgtggga gaaaaaagta tgacaacgaa      1020
     acaccatcaa catcgtatag taatcgcaaa aatacgcaaa gcgataaacc gtggtcagat      1080
     aagtttagga acaaaagttt tcaagaaaaa aaaacgaatg atgacgtatc aatgcgtaca      1140
     ctcaaatcta gaatgcaaat taacaacgcg gaaaccgatg ataaaacggt cgataatgag      1200
     tcagatgaat taaattttca catggtttta ggagaaaggt cagacacttg aataataata      1260
     actttattcc atacttacaa atatttacta caaaaggaat tcttaaattc ttgattgata      1320
     caggtgctaa caaaaactat atttcaccta aacacgtaaa tttggagaat tgcatgagcg      1380
     aagaaaatgt cttcgtgaga agtttaaaag aaagtgaaaa aattttgaaa tctgtacaat      1440
     ttgacatttt tggtataaat agaaaaatca aattctacgt ttattcgttc cataattttt      1500
     tcgatgggtt aataggctat gaaacgttaa gaaacctcaa cgcagttctg gatactcgta      1560
     acaatacgct gaaaatagga cgtaaaatat tagcgctgca taagaaattt ataggaaatc      1620
     cgtcaacaac cttaaatgcc cttcaaacgc attttttgac aatagacacc gtaactgatg      1680
     gggatttcat tatagaagaa gaaaagtcat acggtacgtt ttccatatta cctggcattt      1740
     acacaagcaa gggaaacaaa tcagttatag cgttaaagaa taacacggac aaaaatatcg      1800
     agataaatct aaatgaaatc gaaataattg acaatgagtt cctggaaaac gaaggaccta      1860
     aggtaaaaat taacaagaac ttcgaactaa aggacgactc ccttgctgag tttgaactca      1920
     aggcaattac aaatttattg cgagatattc cagaagtttt atatttcgat gatgataagc      1980
     tatcattcac tcataagatt aaacatagaa tcagaacagt tgataacatt ccgattcaca      2040
     ctaaatcata caaatatcct aagatatttg aatctgaggt acaagatcaa gtgaagaaaa      2100
     tgcttagaga aggtataatt cgtgaatcca tatctccata cacttctccg gtttggattg      2160
     taccgaagaa agaagattca acgggtttga aaaagtatcg tttagtcata gattatcgga      2220
     aactgaacga aaaaaccatt tcggataaat accccatacc ggatatcact gaaatcttgg      2280
     acaggctagg gagagcttct tacttctcta caatagacct tgtagcaggc ttccatcaag      2340
     tacaattaga tgaagacgac atagaaaaga ctgcatttgc tgtaagctca gggaagtatg      2400
     agttcacaag gatgcctttt ggactcaaaa acgcaccgtc tactttccaa agagtgatgg      2460
     atactgtttt aagggaacac ataggattat gttgcctcgt ctatatggac gacatcatca      2520
     tattctctag ctctttccaa gaacacgtaa aagacataag gagcatttta caaaaactga      2580
     aagatgctag attgaaaata aacatagaga aatgcaattt tttcaggaag gaggtgcagt      2640
     ttttaggcca tacagtcact aaagaaggtg tgaaacctaa cgtagataaa attggagtgg      2700
     tacaaaactg gccgatacca aaaaatccaa aagaactaaa gcaatttctt ggaacattag      2760
     gatactacag acgatttatt ctagactttg ccaagcttat tagaccacta acaatattac      2820
     ttcgcaaaga taatgaattc atctttactc ccgataaagt aagatgcttc gagaaatgta      2880
     aatctttgct agccatggat ccgattttgg catacccaga cttcagtaaa acatttattt      2940
     taacaacaga cgcaagtgat ttcgcgatcg gcgctgtact gtcacaggga accgtaggga      3000
     aggatcgtcc tatcgcctat gcatccagga ccttaaacag aaccgaggaa aattattgta      3060
     caacagaaaa agagttgtta gctatagtct gggccgtgaa atattttcga ccgtatttat      3120
     acggaagaaa atttacatta ataacggacc accaacctct tatatattct atgactagtg      3180
     caaatcagaa aataataaga tggaaattgg tgctaaccga atttgatttt gacatagtat      3240
     acaagccagg aaaagagaat atcgtggcag atgctctatc tcgaattaaa cccaatgaaa      3300
     tcgaagcgag caaggacgaa attaatacta ataatactat tcactcggca gataccagtg      3360
     atgaccatta catacgaaca acggaaaaac caacgaatac gtttaaaacg caaattattc      3420
     tgaatattgg caatgaaagc gaatcacatg aagaagtgtt ccctacgtac cacagattta      3480
     tgatatttaa gcggaactat tcagaaaaac aaattataac tatatttcgt gaaaagatta      3540
     atacaaaagg aactaactgc attcatgcac ccaaagaaat catacaaact atacaagaaa      3600
     catatcggaa atatttttgt cagtataaaa cgtttaaact ggtttattcc ccgttgttgg      3660
     taacagatgt gaaaagaacg gaagaccagg acaaattaat tagggaaact cacgagcgcg      3720
     cgcatagggg aataaaagaa aatgtagcac agttacttga atcatatttc ttcccaaaca      3780
     tggaaaaaaa agtaagaatt gtagttaata actgtgcaat ctgtaaacga tgcaagtatg      3840
     atcgaaaccc actgcagctg ataaagaaaa cagtttgcgt agaaaaacca ttcgaaaaaa      3900
     ttcatattga tattttcttt atgaagggaa gaaaaatgtt gacaatcgtt gatgctttct      3960
     ccaaatttgc gaacgtaatc cccttagaaa cacgaactat cattgacctt aagaaatcta      4020
     ttacagagca cataagaatt tttggaagac ctaacactat agtatgcgat caggaaccgg      4080
     catttatttc aatagaattt acaggattcc tacaagattt gaatattgag gtccaccatg      4140
     ccagctgtag taattcaaat ggaattgtag aacgatttca ttcgacactg atagaactgt      4200
     acagaactat gaactctact aatagcgaac tagatttcaa tgacaaaata aatatcatag      4260
     tcgatattta taacaatact atacactcgg ctacagggaa gaaaccgaga gcgattgtat      4320
     ttaatttaga gggagtaaca aacacggaag aaatctacca aaaatttaaa gaactacaat      4380
     caaatgttaa aattaaactt gacaaacaaa ataagaaaac tgaaggagca aaccaaaatt      4440
     taacagaacc tcctgcgtta actgaaggtc aagctgttta cgtgaaggtt aaccaacgaa      4500
     ttactaaaga caaggaacct tataaaacat ctaaagtaaa taagaacaac gacttaactt      4560
     ttgtagataa ttataacata aaaatccata aatctaggct caagaaataa atacgtaaaa      4620
     tatgaccaaa tatgtaggga aaaccggaaa attaaaccca agcgaggacg cttgactcta      4680
     tgaggggaga                                                             4690
//
ID   Gypsy-13_AnFu-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-181
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2826-2826 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 181 BP; 62 A; 27 C; 31 G; 61 T; 0 other;
     cgtaacgcta ggattagtta tttgtatgta acgctagatt tagatatttg tatttgtact        60
     atcgctataa aatgtaatcg tataaaatgt aatgtattcg tgacatatag ctagtaagaa       120
     taaaacactc agtcgagttt tgcacctaga agcgacagca tctctttcaa gaactataac       180
     t                                                                       181
//
ID   Gypsy-13_AnMe-I repbase;    DNA;    INV; 5175 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5175
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6825-6825 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1344..2135
FT                 /product="Gypsy-13_AnMe-I_1p"
FT                 /translation="MSLDEKLELTTPSASGEISTIKLPQFWASSPVGWFIQ
FT                 AEAIFETARIVRDQTKYIHLLSAMAPETFERVMDIIQDPPAEDRYKYLKGK
FT                 LIERFSASEEQRISRLVFHAEMGDDSPSVFFRKMSQLAGSSTEVSTSFIKR
FT                 LWLGRLPKQIEVALIAVGDRDISELLKIADKIWEASLGKNIDEIRINTHSS
FT                 QASQNIDEIASLQSEIRELTRRLKNLESRPSRSFQRNQNQRRPSKSRFCWY
FT                 HQKYGKEANSCVKPCFWKSNEKN"
FT   CDS           2129..5143
FT                 /product="Gypsy-13_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKLKIASLLTGFGATLPVSIGKHSCRLFVHDPLSALT
FT                 YLMDSGADVSVIPQYMFGKITKTPINKLSAANGSTIDTFGTKILKVSLGLR
FT                 REFQHEFVLASVNRPLIGADFLAKFGILLDLKNKKLIDPLTSLFSKGSIAS
FT                 VDTPTPKLFQVNGKFKTILDKFPSLTAPPDYSKPVQHSVVHYITTRGALPF
FT                 SKPRRLDAVKYKAAQAEFQLMMDLGICRPSSSSASSPLHLVAKADQDWRPC
FT                 GDXRRLNAITIPDRYPIPHIQDFTLNLNGCSIFSKLDIVKAYHLIPVAEED
FT                 ISKTAIVTPFGLFEFTRMPFGLRNASQTFQRFINGIFSDLSYVFVYIDDIL
FT                 IASKDACQHKKHVEEVLQRLSENDIKIKTSKCIFGVQTIEFLGHNISPEGI
FT                 KPSSDKVDAITKFPLPTSVKGLQRFMGMLTYYHRFIKDISKTMQPLHDLVA
FT                 YHNKHKKTLFSLPANVADAINKLKSELANVTLLAHPKENTTYSLTTDASDV
FT                 AMGAVLQQYDNGKWQPLGFFSKKLTQTQQRYSTFDRELLAIFASIKHFRYF
FT                 LEGRTFFVKTDHKPLITVLASKTDKSPRQYRQLDYISQFTSDIRYIKGESN
FT                 IVADALSRIELNELSQKIDCNEFFTHQACDEQLEQIIFKSKSSNKTSKYTM
FT                 EIKNVDGYNLQFETSTGNNRIYVPGTLRKSIFDSVHNLSHPGVRASRKLIT
FT                 TRFFWPAMNADIGRWARTCIACQRAKVSRHTKSPLGKFAIPAGRFDHIHMD
FT                 IVGPLPPSEGMSYILTIMDRFTKWPECYPIPEITAETVAWTFVKEYISRFG
FT                 CPGTITTDRGRQFESRLFDSLTKFLGTHHIRTTAYHPQANGMVERFHRQLK
FT                 NSIKASDVSVPWAKRLPIILLGIRASHKEDLNATPAEIVYGQTLRLPSEIF
FT                 KPDTHYLSSDHEFTENLKKIMKSIKPIESEVKTNLHPYVSKDLDKCQNVFV
FT                 RVDKVRTGLKPPYEGPFHVIRRLRKFFILDINGKSESVSIDRIKPAYILN"
XX
SQ   Sequence 5175 BP; 1705 A; 1072 C; 992 G; 1405 T; 1 other;
     ttggtgaccc cgacgtgatc gataagttcc gtcacaacgt gatcgtatat agtgatagtg        60
     ctgcacaagt taaaaccgga gaaagtgtac gccattcttc acgcgatcat tgatatctcg       120
     ctggtaacgc gccacacggc attattaacg tcgtttaact gagagagaga gagagaaaga       180
     aagcgggctc tctagttcag tcctgtacga cacgagcaca gctcgagcgt tttggttaca       240
     ccttacgcca aaggcctgcc gctatttttt ggccgtttaa aatcgtaccg cgcaatcgag       300
     cgaaacgcta cgttcgtttg ccacaatcgt aatatatttc gattgccaca atcgtgaaga       360
     ggaccctctc gtcttagacc cgccatcgca aagtaaccat tttgcccacc acgaggtgcc       420
     gccatcgcga aaagagccaa ctcgcacacc acgaggtacc gctatcgcgg gggcaatttc       480
     caagaaagaa gcaattttcg cgccgaccac gaggagcaac caccgcatac accaagcaat       540
     ttggagagag aagcagtatt cgcatctacc ttgaggtgtc atcgccacta ataaccgtcg       600
     aggcaacgat aagggacaac taattctact catcatcgcc gtacccagcg gtatcagacg       660
     atcgcagtta tcggcacgcc cccgttcctt cttaccccgc tgcattgcca tagctagtgg       720
     cacgagaggc cagattctgc aacacacata ctggtccctg tcgccacacc gatctacgaa       780
     gatcggtacg aacatccaca tcagcagctt cacaccacgg ccatcggcag ttgcagcgtt       840
     ctctacaggt atcatgtgag tacacgagta ttgccaagtg aagaacagga ataagacaat       900
     agtgagcaat tgtacagtgc attacgtaaa aatacgtcta gtttaaaaaa aaagaaataa       960
     taacaattac aattttttgc acaacattta ccgttccaag ttaaaatacc acgttcgaat      1020
     tgaaaatata cagtgcggtg cgtaacatta tgccatgcgt gatttaaagt gaaacaaaat      1080
     tagtataagt acaacgtttg aagtgatttc gatttcatat tgcgtaaaag cgtgtctaaa      1140
     ctaatatatc tttagattca ttttttttat gttaaatatg caatagggtt cgatcagcta      1200
     ggtttacata aaaaagaact aggcgcgatt ggtgatttca ttaaattatc cctgcattta      1260
     ccgtgcgagt ctctcattta cattttattt acccacattc aattttcttt ttctgcatat      1320
     tacattgtaa aattattgca actatgtcat tagacgaaaa gcttgaactc actactccct      1380
     ctgcctctgg ggaaatttca acaattaagt tgccacaatt ctgggctagc tctccagtag      1440
     gatggtttat acaagcggaa gcgatattcg aaaccgctcg cattgtcaga gaccaaacca      1500
     aatacataca cctgttgagt gccatggcac cagagacatt cgagagggtg atggacatta      1560
     ttcaagatcc tcctgctgaa gatagatata aatatttaaa aggcaaactt atagaacgtt      1620
     tttctgctag cgaggaacaa cgtatttcac gactagtttt tcatgcggag atgggagacg      1680
     attctccgtc agtttttttc aggaaaatgt cacaactcgc tggcagtagt actgaagtgt      1740
     caacaagttt cattaaaaga ctttggttag ggcgattacc aaagcaaata gaagtagctt      1800
     tgattgccgt aggagataga gatatttcag agctattgaa aattgcagac aaaatatggg      1860
     aagcatcatt aggaaaaaac atagatgaaa ttcgaatcaa cacacattct tcccaagctt      1920
     cccagaacat cgatgaaatt gcatcactac agtcagaaat aagggaattg acaagaaggc      1980
     ttaaaaattt agaaagtagg cccagtagat catttcagcg caatcaaaat caaaggcgtc      2040
     caagcaagtc aaggttctgt tggtaccatc aaaaatatgg gaaagaagca aattcttgtg      2100
     tcaaaccgtg tttctggaaa tctaatgaaa aaaactaaag attgcttcgt tattgacagg      2160
     tttcggagca accctgccag tttcaattgg taaacattcc tgtcgacttt tcgttcatga      2220
     tcctctcagt gcacttactt atttaatgga ttcaggggca gatgtttcag ttattcctca      2280
     gtatatgttc ggaaaaataa ctaaaacacc aataaataaa ctttcagccg ctaacggaag      2340
     cactatagac actttcggaa caaaaatttt aaaagtttcc cttgggttga gacgcgagtt      2400
     tcagcatgaa tttgtgcttg cttcggtcaa tagacctcta attggagctg attttttagc      2460
     aaaatttgga atccttttgg atttaaagaa caaaaaactg atcgatccac tgaccagtct      2520
     cttttcaaaa ggatcaatag ctagtgtcga tacaccgacg cctaaattat ttcaagtaaa      2580
     tggaaagttc aaaaccatat tggacaagtt tccatcacta actgctccac cggattacag      2640
     caaaccagtt cagcactcag tggtccatta catcaccacc agaggggcac tgcctttttc      2700
     aaagccgagg cgtctagacg ccgtaaaata taaggcagct caggcagaat ttcaactaat      2760
     gatggattta ggaatctgcc gtccgtcatc ttcatcagct tcatctccat tacatttggt      2820
     tgcaaaagct gatcaagatt ggagaccctg cggagactwt cgtcgattaa atgctataac      2880
     gattccagat agatatccga ttcctcatat tcaggatttt acattaaatc taaatggttg      2940
     cagtatcttc tcgaagttag acatagtcaa agcgtatcat ctcattccag tagctgagga      3000
     ggatatctct aaaacagcaa ttgtcacacc ttttggactg tttgaattta ctcgaatgcc      3060
     atttggtctt cgaaatgcaa gtcaaacatt tcagagattc ataaatggaa tatttagtga      3120
     tttgagttat gttttcgttt acatagacga tattttgatc gcaagcaaag atgcttgtca      3180
     acataagaag cacgtagaag aagtcttaca acgtctgtca gaaaacgaca ttaaaataaa      3240
     aacttctaaa tgcatttttg gggttcaaac aatagaattt ttaggacaca acatatcccc      3300
     tgaaggcatt aagccttcat ccgataaagt agatgcaatt acaaaatttc ctctccctac      3360
     ttcggttaaa gggctgcaga gattcatggg tatgttgacc tactatcata gattcataaa      3420
     agacatatct aaaacaatgc aacctctgca cgacttggta gcatatcaca acaaacataa      3480
     gaaaactttg ttttcattac cagcaaatgt cgctgatgcc ataaataagc taaaatctga      3540
     gttggcgaat gtaaccctac tagcacatcc aaaagagaat acaacatact ctttaacaac      3600
     ggacgcctca gacgttgcaa tgggcgcagt tttacagcag tatgacaatg gcaaatggca      3660
     acctctaggt ttcttttcaa aaaagttaac tcagacacaa caacgctatt ccacattcga      3720
     tagagagctt ttagcaattt ttgcttcaat taaacatttt agatattttt tagaaggccg      3780
     aacatttttt gtgaagactg atcataaacc acttataaca gttttagcat caaaaacaga      3840
     taaatcgcct cgtcaatata gacagttgga ctacatatca caatttacat cagacataag      3900
     atatataaaa ggtgagagca acatagttgc agacgctctt tcaagaattg aattgaatga      3960
     attatcacaa aaaatagact gtaatgaatt ttttactcat caagcttgtg atgagcaact      4020
     ggaacaaatc attttcaaat ctaaatctag caataaaaca tcaaaataca ctatggaaat      4080
     taaaaacgta gatggataca acttgcaatt tgaaacctct acgggtaata atcgtatcta      4140
     cgtgcctggc acattaagaa aatctatttt tgatagtgtt cataacctct cacatcctgg      4200
     ggtaagagca tccaggaagt tgataacaac cagatttttc tggcctgcaa tgaatgcaga      4260
     tattgggaga tgggctcgca catgtatagc atgccaaagg gcaaaggtca gcagacacac      4320
     aaaatcacct ttgggaaaat ttgcaattcc tgctggaaga ttcgatcata tccatatgga      4380
     tattgtaggg ccccttccac cctcagaagg gatgtcatat attttaacaa ttatggacag      4440
     attcacgaaa tggccagaat gctatccaat cccagaaatt accgcggaaa cagtagcttg      4500
     gacttttgta aaagagtata tttccagatt tggttgcccg ggaactatca ctactgatag      4560
     aggtagacag tttgagagta gactgttcga tagtctgaca aagtttttag gtacacacca      4620
     cattagaacc accgcctacc atcctcaagc aaacggcatg gtggaaagat ttcaccgtca      4680
     gctgaagaac tccatcaaag cctcagacgt gtccgtgcca tgggcaaaaa gattaccaat      4740
     cattctactg ggaataagag cttcgcataa agaagattta aatgctaccc cggcagagat      4800
     agtatatggg caaactttgc gtctaccatc agaaatattc aaaccagaca cacattattt      4860
     atccagtgac catgagttca cagaaaattt aaaaaagata atgaaatcaa tcaaaccaat      4920
     cgaaagcgaa gtcaaaacaa atttgcaccc ttacgtttcc aaggatttag acaaatgcca      4980
     aaacgttttt gtgagggtgg acaaggttag gacaggttta aaacccccat atgaaggccc      5040
     gttccatgtt ataagacgcc ttagaaaatt ttttatatta gacattaatg gaaaatcaga      5100
     atctgttagt atcgatagaa ttaagcctgc atatatttta aattaggtcg taactccgtt      5160
     actggtgggg tgtag                                                       5175
//
ID   Gypsy-13_AnMe-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-166
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6850-6850 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 166 BP; 58 A; 25 C; 38 G; 45 T; 0 other;
     tgtagcaacc ttgatcccat aacaattggg aattattata gctaggttag gtttatagat        60
     taggatagag gattaggata gtttataaga atagaaggaa gtaagaataa agccctcttt       120
     ttggtaacga cacagccgtg agataaagct ccgtgaaccc gctaca                      166
//
ID   Gypsy-13_AnSt-I repbase;    DNA;    INV; 4401 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4401
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 796-796 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..4365
FT                 /product="Gypsy-13_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MATVDELCENFTKVGLTRECEKLGLPAIGGKRDIAKK
FT                 IINHRNMTNSGGENGEDDRDPQKDGVCEKDDSHTEDAERGVVGSCEKDGSH
FT                 SDNEERAERDGFSTNGEDDEADNDDSEDNESDDMFQTAIRTNTSTPLANRL
FT                 RASRRTKVYSFRDMEESIESFGAEEGEDVRLWLMQLKGVCKAARWDDEQQL
FT                 IMCRKKLTGTAKRFVFSLRSSFSSFKKLEQALIREFAPRVRASDVHRALTN
FT                 RKKKNSESIRDYIYEMQRLALPIELDEPSLCEYIVNGITDDEHHQTILYEA
FT                 QSIERLKRKLLNFERVMKDSKNKKKRDDFGNRKEKAREKENNTMSKKRSCF
FT                 NCGETSHVSADCPQKGAGPKCFSCNTFGHRARECKKGGTSSQKEKQNVLIC
FT                 GPSVEPNHSEHPPSSVTKWEDEFTSKRSSEKQVWLQRTIIQVKVESVIIDA
FT                 LFDTGSPMNLMTHYTYEKIGKPCLSTTTMKLKGFGGNEIAADGVFQVDMCI
FT                 DCHQYRDVLFYLVPNKSMSFAAVLGTASLQHFDVKVTTNGVQVLKREECEI
FT                 MDIMLCENEIDVPKQYASEVKSLISNYVPCEDVKSTVEMKILLEDEHPVQT
FT                 NPRRFAPKEKEVLEKTVNEWLNAGIIRESNSDYASPVVLAKKKDGSMRVCV
FT                 DYRELNRKIKKDCFPMRNMEDQIDKLQGAKVFTTLDLKNSFFHVPIEKSSQ
FT                 KYTAFVTHTGQYEFLRAPFGLCNSPACFSRFVANAFRELIKSGEILVYVDD
FT                 LIIATNSEEENIITLKKLFKAASANGIEFNWKKSQFLKPEVEYLGFVIKDG
FT                 TYSISPDKLKAINSFPVPRNVKELQRFLGLTSYFRKFIECYAIMAKPLTDL
FT                 MRKNVEYEFTNMHLNCFERLKKCLVSDPVLKIYEQKAATEVHTDASKEGYG
FT                 AVLLQKGADDHFHPVYYMSHQTNDAEKNYSAYHLEVLAVVRAVEKFRVYLL
FT                 GIPFKIVTDCSAFQHTFKAKELSARIARWALMLEEYDYKVIHRPGTSMRHV
FT                 DALSRAIMIVTNDPVVEMIITAQKKDERISAIRQLLTTQPYDDYCMNGEVV
FT                 MKLVKGKEVIVVPVELQGEIIRRAHENGHFGVRKLEDMISRDYYIPNLSEK
FT                 IKRKIECCVKCLIAERKRGKIDGMLYPIEKGEVPFDTYHVDHVGPMAVTDK
FT                 MYKYIFVVVDAFTKYTWIYPTKTTASNEVIQRLRNQSEMFGNPRRIVSDKG
FT                 SAFTSNSFKQYCEEENIEHIEIVTGVPRGNGQVERANQVILAMLTKLCVND
FT                 SRKWYKHVGDVQKWINLNVHQSTRVTPFQAMFGVTMRHKEDLRLSELMEEI
FT                 RVARFHEERSALRAQARSSIERAQATQKRNYDLRARSSTKYEVGDVVVVQR
FT                 SQFNPGMKTAPQFLGPYKVVEKMPNDRYKVEKISGEGSQHTTTASSQMKKY
FT                 RVEVTKE"
XX
SQ   Sequence 4401 BP; 1472 A; 764 C; 1115 G; 1049 T; 1 other;
     tgggggctcg tccgggawgt gcgtgatctc gatatagata aagtgaagcg atcaagcgac        60
     acgagaaagg attcaagtga ataacgacga actaacgacg aaatggcgac ggttgacgaa       120
     ttgtgcgaaa atttcaccaa agttgggttg acacgcgagt gcgaaaagct tggtttgcca       180
     gccatcggtg gaaaacgaga tatcgcgaaa aaaatcatta accatcggaa catgacgaat       240
     tctggaggtg aaaatggtga agacgatcgc gatccacaga aagacggcgt gtgtgagaaa       300
     gacgactcac acacagaaga cgctgaacgt ggagttgtcg gtagttgtga gaaagacggc       360
     tcacactccg ataacgagga acgtgcagaa agagacggct ttagcaccaa cggcgaggac       420
     gacgaagcgg acaacgacga cagtgaagac aatgaatccg atgatatgtt tcagacggca       480
     attcgaacca atacttctac accgttagca aatcgactac gcgcatcacg acgtacgaag       540
     gtttactctt tccgcgatat ggaagagagt attgaatcct ttggtgcgga ggaaggagaa       600
     gacgtacggt tatggttgat gcagctcaaa ggcgtgtgca aagctgcgcg atgggacgat       660
     gagcaacaat taataatgtg ccgaaagaaa ttaactggta ccgcgaaacg ttttgtattt       720
     tcgcttcgga gcagtttcag cagttttaag aagttagaac aagcgctgat tagagaattt       780
     gcaccacgcg tacgggcaag cgatgtacat cgtgcgttga cgaaccgtaa gaagaagaac       840
     tcagagtcca tccgtgatta tatttacgag atgcaacggc tagcgctccc tatcgaactc       900
     gacgaaccta gcctctgcga atacatagta aacggtatta cggacgatga gcatcaccaa       960
     acgattttat acgaagcgca aagcatcgaa cggcttaagc ggaaactact gaatttcgaa      1020
     agagtgatga aggattccaa gaacaaaaag aagcgcgacg attttggaaa cagaaaagag      1080
     aaagcacgtg aaaaggaaaa caacacaatg agcaagaagc gtagttgttt caattgcggt      1140
     gaaacgtcac atgtttccgc ggattgtcca cagaaaggtg caggacctaa gtgtttttcg      1200
     tgcaatacgt ttgggcatcg agcgcgcgaa tgcaagaaag gtggcacgag tagccagaag      1260
     gagaaacaaa atgtgttgat ttgtggacca agtgtagagc caaaccatag tgagcaccct      1320
     ccttcaagtg taactaagtg ggaagacgaa tttacatcga agaggtcatc tgaaaagcaa      1380
     gtgtggctgc agagaacgat aattcaagtg aaagtagaat cggtaattat tgacgctttg      1440
     tttgataccg gcagtccaat gaatttgatg acgcattaca catatgaaaa aatcggaaaa      1500
     ccctgcctaa gtaccactac aatgaagcta aaaggttttg gtggcaacga aattgctgct      1560
     gatggtgtgt tccaagtaga tatgtgtatc gactgtcacc aataccgtga tgtgcttttc      1620
     tatctagtac cgaataaaag tatgtctttt gcggctgtgc tcggaacggc gtcccttcag      1680
     cattttgatg taaaggtgac cacgaacggt gtgcaagtgt taaagcgaga agaatgcgaa      1740
     attatggaca ttatgctgtg cgagaacgaa atcgatgtac cgaaacaata tgcaagtgaa      1800
     gtcaaatccc taatttctaa ctacgtgccg tgtgaagatg taaagagtac cgtggaaatg      1860
     aaaatccttc tcgaagacga acacccggtg caaaccaatc caaggcggtt tgccccgaaa      1920
     gaaaaagaag tgctagaaaa aacagtaaac gagtggttga acgcaggcat aattcgggaa      1980
     agtaacagtg attatgcgag tcctgtagtg ctagcgaaga agaaagatgg ttctatgcga      2040
     gtgtgtgtag attaccgcga gctcaaccga aagataaaga aggattgttt tccgatgagg      2100
     aatatggaag accaaattga caagctacaa ggagcaaaag tattcacaac gctggatttg      2160
     aagaactctt tcttccatgt gccgatagag aagtctagcc agaagtatac agcgtttgtg      2220
     acacatacag gccagtacga gtttctacga gctccattcg gcctgtgtaa cagtcctgca      2280
     tgttttagtc gttttgtagc caacgcgttc cgtgaactga tcaaaagcgg tgaaatatta      2340
     gtgtatgtgg atgatttgat cattgcgaca aatagtgaag aagagaacat tatcacgttg      2400
     aaaaagttgt tcaaggctgc cagtgcaaac ggaattgagt tcaattggaa gaaatctcag      2460
     tttcttaagc ccgaagtgga atatttgggg tttgttatta aggatggtac ctatagcatt      2520
     tcgcccgata aattaaaagc aataaattct tttccggtgc caagaaacgt gaaggagtta      2580
     caaaggtttc tgggtttgac gagttatttt cgtaagttta tcgagtgcta cgcgataatg      2640
     gctaaaccgc taacagactt gatgcgtaaa aacgttgaat acgagtttac aaatatgcat      2700
     ttgaattgtt ttgaaagatt gaagaagtgt ttggtgtctg atccagtgct gaagatttat      2760
     gaacaaaaag ctgcgacaga ggtacatacg gatgcttcaa aagaaggtta cggagcagta      2820
     ctgctacaga agggcgctga cgatcatttc catcctgttt attatatgag ccaccaaacg      2880
     aatgatgcag agaaaaacta cagtgcgtac catttggaag tattagccgt tgtgcgagcg      2940
     gtagagaaat ttcgtgtcta tttgcttgga atacctttca aaatagtaac agactgttcg      3000
     gcttttcaac acacctttaa agcaaaggaa ctttctgcgc gcatagctag atgggcttta      3060
     atgttggaag aatatgatta taaagtaatt catagaccag gaacgtcaat gaggcatgta      3120
     gatgctttaa gtcgagctat tatgattgta acgaatgatc cggtggtaga gatgataata      3180
     actgcgcaaa agaaagacga aagaatttca gccatacgac aattattaac aacacaacct      3240
     tatgatgact actgtatgaa cggcgaagtt gtgatgaagc tggtgaaagg taaggaagtt      3300
     atagtcgtac ctgtagaatt acaaggtgaa attataagaa gagcccatga aaacggacat      3360
     ttcggagtgc gtaaactgga agatatgata agtcgtgatt attacatacc gaatctctca      3420
     gagaagataa agaggaagat cgaatgttgc gtaaagtgtt tgattgcgga acgtaaaaga      3480
     ggcaagatag acggaatgct atatccaata gaaaaaggag aggtgccgtt tgacacctat      3540
     catgttgacc acgtaggtcc gatggcggtt acggataaaa tgtataaata tatttttgtt      3600
     gtggtggatg cgtttaccaa gtacacgtgg atatatccga cgaagactac agcttccaat      3660
     gaggttattc agcgattgcg taatcaaagc gaaatgtttg gaaatccacg aagaatagta      3720
     agcgataaag gatctgcatt tacgtcaaac agtttcaaac aatattgcga ggaagagaat      3780
     attgaacata ttgaaatagt tactggcgtg ccgcgtggca atggacaggt cgaaagagca      3840
     aatcaggtga tactagcaat gttgaccaaa ttatgtgtaa acgattcacg aaagtggtac      3900
     aagcacgttg gagacgtaca aaaatggatt aatttgaatg tacatcagtc gactagggtc      3960
     acacctttcc aggcgatgtt tggggtgaca atgcggcata aagaagattt gcgtttatcg      4020
     gaattgatgg aagaaatacg tgtagcacga tttcacgagg aacgtagtgc tttaagggct      4080
     caagctagat caagtatcga aagagctcag gctacacaaa aacgaaatta tgatctacgt      4140
     gctagatcat caacaaagta tgaagtagga gatgtagttg tggtacaaag aagccaattc      4200
     aatccaggaa tgaaaactgc accacagttt ttaggtcctt acaaggttgt agaaaagatg      4260
     cccaatgatc gatataaagt agagaaaatt agtggcgagg gctcacaaca tacaacgaca      4320
     gcttctagcc aaatgaagaa gtatagagta gaagtgacta aagaataaca tccgaggcgg      4380
     atgaattgtc aggagaggcc g                                                4401
//
ID   Gypsy-13_AnSt-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-233
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 809-809 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, often in (AT)n
CC   microsatellites.
XX
SQ   Sequence 233 BP; 75 A; 43 C; 62 G; 53 T; 0 other;
     tgtggatgtg taaggaggaa tcacgcgatg acttgcaagg gatgtgagag tgtgtgagtg        60
     aacgcgacgg tgacaatgat gtaggacgtg tgacgcggag gcagttgcaa ttgaccagcc       120
     ggagtgtgca gacgaaaaaa cgatcacagt ctatcttatc gaacaccact taccaatatt       180
     acaataaagg attgaacttt caaactgtac aaacaaagtc cgcctttatt aca              233
//
ID   Gypsy-13_BTa-I repbase;    DNA;    INV; 4738 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4738
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 677-677 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..4674
FT                 /product="Gypsy-13_BTa-I_1p"
FT                 /translation="MNDRNQELPNRTLPATTATYVGTLKPFEAKVSLSTWL
FT                 EMLENFCDLNEITEASSKRKVLLNYLSFDVYSELRTQLLPEKPSSKSFDQL
FT                 VTLLQETYEPNKILFSDILKFESRVQAEGETAAVYLTSLRLLADKCNFGDN
FT                 LKNRLLVKFVNGLNSVNLKKKLWEKSDLTLEDAIKFVRNFETIASELKPAS
FT                 VNKVNFHNNNQVNRRTNNKSNSFRPVNRSFNRSSPPQPQSNNQFPATNSNQ
FT                 RTNYRQSNNQRNFNARQPNNGQQSRQQPNRRVNPQTTTQCYRCTRLHNPNY
FT                 CPARYWKCFNCGIQGHTSTACNQAKAVLEESTDEEIEEIIVGRISNAHLPI
FT                 TKSTSDLQVRNIPSAQLTLAPTSSKSQSNLYVYRVTNNPLLGNIVINDKSV
FT                 ECEFDSGSAVSLMSLSEFSDKFPESKVEKCTSRLWNVDGQPLNTIGEIKVT
FT                 VFVQPNRYTLRLIVVKFAKPTKMLVGREWLDTISPNWRHNLLGPLLNDKAI
FT                 SQNCSNISVKHTQEKHIDEIKLQFPHACSTDKSTSIRGYKAQLVLKDDVRP
FT                 VFHKFYEIPFSQSEEVHQIIMNLVKSQRLEPVTHSEWASPIWPVKKKTGGI
FT                 RVVVDFRKTVNPCLRLDHYPLPRLEDIWSKLANCNFFTKIDLTEAYLQLKV
FT                 TDDSKEILTINTPWGLFQFNRLIYGINSGSSIFQSVIDRILSNLPWCGVFI
FT                 DDIVFGDKTIDGVKQKTHIVLGKLDVHRVQVNLVKSIFYAPEIELFGHIVN
FT                 CEGIRPTLDKTSAILNARPPKNVSELRSYLGLVQFYARFIPNLSTHLKPLH
FT                 KLLEKNTKFDWNSQCDEAFSYTKQKLVEKPVLTIYDPQKPIFVYTDASPYG
FT                 VGTVLCHLIANFDKPVMYASASLTPCQQKYAQLDREALAVVFAAKKFHKYL
FT                 YGLPFTVVTDNQPLKSLLNKGVPTIASPRFQRWFVTLSAYNFKTIYRKASL
FT                 LKPADALSRLPADNVTIKEISETIELLPDIPLTPELIALETGNENTLSTVF
FT                 NYVLQGWPRNVKDVNIRPYFLVRESLSLHDNVILFGDRVVIPKKLQTKVLE
FT                 NLHDSHPGIVRMKSLARKNVWWPTLNNDIENKIKNCAACQTVNFKPVSSAK
FT                 TSWPETNQPWQRVHLDHFFFNNEVYVVLDDAYSKWIEVWPVSSTNFESLEE
FT                 KLLMHFATYGPMLQVVTDNGPPFQSQEFKDFCTKHSIIVTKSPPYHPTSNG
FT                 LAERAVQTVKKALEKIKLENCNISKKDLLKKLCKFLFAYRNTPITGKDVSP
FT                 CDLVLKQTPRTTLNLIHPKKQPKAPKLPNLSVNETVLVRMSKQHQVQKGVI
FT                 HKQISPTTYLIKVNGEIKLCHLNQIKLTTLSDLELKQKPSPYPTVDPLNLA
FT                 MMQSSASTSKPQIQLAPKITNVISPSSPVKKQQPVPHTGNTRRALSFNETN
FT                 AILPGTSNSRQTLRQSGTPQPHNSRKRPSVPQNSNSPEWQNESSSEQPSSS
FT                 RTKTPEPPVTPPAPPPRKSSRESKPPMRLNL"
XX
SQ   Sequence 4738 BP; 1620 A; 1151 C; 786 G; 1179 T; 2 other;
     ttggcgacga ggattaaaaa atcgttttac ttattgtcaa ccaaccgcgc cgcgccggtc        60
     acctttactc aaggcacwtg wagaaaccga aataaccgtg tcaagcgaag ccaacctagt       120
     gaaccgcgtg gccgtggcta ccgtgcaacc cgtcaaagtc gaaaacctta tccttaggta       180
     cgaaaaatga acgatcgaaa tcaagagcta cccaaccgga cgcttcctgc aaccacagca       240
     acgtatgtgg gaaccctgaa accctttgaa gccaaagtct ccctgtcaac atggctagaa       300
     atgctagaga acttctgcga cctcaatgaa atcaccgagg catccagcaa acgcaaggta       360
     cttctgaact acctatcctt tgacgtttac tcagaactaa gaactcaatt gttgcctgag       420
     aaaccatcaa gcaaatcatt tgaccaactt gtcacactcc tccaagaaac ctacgaacca       480
     aacaagatcc ttttttccga tattctaaag tttgaatcta gagttcaagc agagggcgaa       540
     actgctgcag tgtatttaac ctctcttaga cttcttgcag acaaatgcaa cttcggagac       600
     aacctcaaga acaggctcct agtcaaattt gtaaatgggc tcaactccgt caacctcaaa       660
     aaaaagttgt gggagaaaag cgacttaacc ctggaggatg ccatcaagtt tgttcgcaac       720
     ttcgaaacaa ttgccagtga acttaaaccc gcctcagtca acaaagtcaa ctttcataat       780
     aataaccaag tcaaccgtag aactaataac aagtctaact catttcgacc cgttaatcgt       840
     tcatttaatc gaagctcacc acctcaacct caatctaaca accaatttcc agccacgaac       900
     tcaaatcagc gcaccaacta tcgtcaatca aacaatcaac ggaatttcaa cgcacgtcaa       960
     ccaaacaacg gtcaacaatc acgtcaacaa cccaaccgca gagtcaaccc gcaaactacc      1020
     actcaatgtt atagatgtac aagactgcac aatcccaatt actgccctgc ccggtattgg      1080
     aaatgcttca attgtggaat ccaaggccac acgtccaccg cctgcaacca agccaaagca      1140
     gtgttggaag aatccaccga tgaggaaatc gaagaaatca tcgtgggaag gatatccaat      1200
     gctcacctac caatcaccaa gtcaacaagc gacctccaag tccgcaacat tccctccgcg      1260
     caattaacct tagcaccgac ttcttctaag tcacaatcta acctctatgt gtaccgtgta      1320
     accaacaacc cattactggg aaatatagtt ataaatgata aaagtgttga gtgcgaattc      1380
     gactcgggat cagcagtgtc actaatgtct ctcagtgaat tttctgacaa attcccggaa      1440
     tctaaagtag aaaaatgcac atctcgctta tggaatgttg acggacagcc attaaacact      1500
     ataggagaaa ttaaggtaac agttttcgtt caacccaata gatacaccct caggctgatt      1560
     gttgtcaaat ttgctaaacc aactaaaatg ctggtcggga gagaatggct tgataccata      1620
     tccccgaact ggcgacacaa cctgctaggt cccctactta atgataaggc cataagccaa      1680
     aactgcagta acatttcagt caaacacacc caagaaaaac acattgatga aatcaaactt      1740
     caatttcccc atgcttgtag cacagataag tcaaccagta ttcggggcta taaagctcaa      1800
     cttgtattaa aagatgatgt ccgacctgtt ttccacaaat tttatgaaat cccatttagt      1860
     caatcggaag aagtgcatca aataatcatg aatttagtaa aatctcaaag acttgaaccc      1920
     gtcacccact ctgaatgggc ttcacccatt tggccagtca aaaagaaaac gggcggaatt      1980
     cgagtagttg tcgacttccg caaaacagtc aacccttgtc ttagattaga tcattacccg      2040
     ttacctagat tagaggacat ttggtccaaa ctagcaaatt gtaacttctt caccaaaatt      2100
     gatctcacag aagcatactt gcaactgaaa gttaccgatg atagtaaaga aattctcacg      2160
     atcaacacac cctggggatt gtttcaattt aacagactaa tttacggtat caacagcgga      2220
     tcatcaattt ttcaatctgt aattgaccgc atattaagta atctcccctg gtgtggagtc      2280
     tttatagatg acattgtatt tggcgacaaa actattgatg gagtcaaaca aaaaacacat      2340
     attgtattag gtaaattaga tgttcacaga gtccaagtca acttggtcaa aagtatattt      2400
     tatgcaccgg aaatagaatt atttggccat attgtaaact gcgaagggat ccgcccaaca      2460
     ttagataaaa cctcagctat actaaacgct cgtccaccaa agaacgtatc cgaactcaga      2520
     tcttatctag gtttagttca attttatgca cgtttcatcc ctaatttgag cacgcacttg      2580
     aaacccttgc acaaattgct agaaaaaaac actaagttcg attggaactc tcagtgtgac      2640
     gaagcctttt cgtacactaa acaaaagtta gttgaaaaac cagtgctaac tatctatgac      2700
     cctcagaaac ctatttttgt ctacaccgat gcctcacctt atggagtagg cacagtccta      2760
     tgtcacctca ttgcgaattt tgataaacca gtcatgtatg catctgcatc cttaactcct      2820
     tgtcaacaaa aatatgcaca gctggacaga gaagctctcg ctgtagtctt cgcagctaag      2880
     aaatttcaca aataccttta tggactacca tttacggtgg tcactgataa tcaaccccta      2940
     aaaagtctgt taaataaagg tgtgccaact attgcgtcac ctcgcttcca aagatggttc      3000
     gtaacgctta gcgcttacaa ctttaaaacc atttatcgta aagcatcctt actaaaacca      3060
     gctgatgcat tatccagact ccccgctgac aatgtaacga taaaagaaat ttctgaaacc      3120
     attgaattgt tacccgatat tcctttaacc cctgaattaa ttgctctaga aactggaaat      3180
     gaaaacaccc ttagcactgt cttcaattat gtgttgcaag gatggcctag aaatgtcaaa      3240
     gatgttaaca ttagacctta ttttctagta agggaaagtc tatcgttgca tgataatgtc      3300
     atactttttg gagatagagt tgttatccca aaaaaattgc aaactaaggt ccttgaaaat      3360
     ttgcatgatt ctcatcccgg gattgtaagg atgaaatcgc tcgccaggaa aaatgtatgg      3420
     tggccaacat tgaataacga tattgaaaac aaaataaaaa actgtgcagc ttgtcaaaca      3480
     gtcaatttca aacctgtatc atccgccaaa acttcatggc cagaaactaa tcaaccctgg      3540
     caacgagtac atttagacca tttttttttt aataatgaag tgtatgtagt actcgatgat      3600
     gcatatagta aatggatcga agtctggccg gtatcgtcta caaattttga atctctagaa      3660
     gaaaaattat taatgcactt tgctacatat ggccctatgc tgcaagtagt gacggacaat      3720
     ggtccgccat ttcaatcaca agaattcaaa gacttttgta ctaaacattc tattattgtc      3780
     acgaagtcac caccttacca cccaactagt aacggcctag ccgaaagagc ggtccaaact      3840
     gtcaaaaaag ctttagagaa aatcaaatta gaaaattgta acatttcaaa aaaagatcta      3900
     cttaagaaat tatgtaaatt tttattcgca tatagaaaca cccccataac tggaaaagat      3960
     gtcagcccct gcgatcttgt acttaaacaa acccctcgaa caacccttaa cttaatacac      4020
     cccaaaaagc aacccaaagc ccctaaattg ccaaacctta gcgttaacga aacagtccta      4080
     gtaagaatgt ccaaacagca ccaagtacaa aaaggtgtaa ttcataagca aataagcccc      4140
     acaacgtatc taattaaagt caatggagaa ataaaacttt gtcacttaaa tcaaatcaag      4200
     ctcacaacgc tctccgacct agaattaaag caaaaaccct ccccttatcc taccgtagac      4260
     ccactaaacc tagcaatgat gcaatcaagc gcaagcacat ctaagccgca aatacagctt      4320
     gcaccgaaaa taactaatgt cattagtcca agctctcctg tgaaaaagca acaacctgtt      4380
     cctcatacag gaaatactcg tagagcactc tccttcaacg agacaaatgc tatactacca      4440
     ggaaccagta actcccgaca aactttaagg caaagcggta ccccacaacc ccataactca      4500
     agaaaaagac cctcagtacc tcaaaactca aattctcctg aatggcagaa tgaaagtagt      4560
     tcagagcaac cctcctcttc acgtaccaaa acccccgaac cacctgtcac cccacctgca      4620
     cctccgccga ggaagtcaag tagggaatcc aaaccaccta tgcgactaaa tttataaact      4680
     aagcgaaatt ttgtgaacaa tctgtttctt gttttttttc aattgaccag ggagtggg        4738
//
ID   Gypsy-13_BTa-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-142
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 687-687 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 142 BP; 29 A; 36 C; 21 G; 56 T; 0 other;
     tgttatgttt gaattgcccg ccacaccggt cgaaccgttt taagcaattt cgtctgaata        60
     aaatctctct tggttcgtca tctctacatt cgtttgtctc atcttttttt gtcttcccgt       120
     ttcgagtcca ccaaatatat ca                                                142
//
ID   Gypsy-13_CFl-I repbase;    DNA;    INV; 7198 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-7198
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1032-1032 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1596..2552,2449..3468)
FT                 /product="Gypsy-13_CFl-I_1p"
FT                 /translation="MSVEDQGGARARXXLGEGXAXDLRGPPPXXGQXVKXX
FT                 DVAGGDAGYRPTXREPAAAXXXSSRPGRASTAEAYNLMRKWNLHFSGKRGN
FT                 DAEAFLLRIKEARAIVPISDADLFKCLPLFLSEVALYWVRLESGNWRDWND
FT                 FEAAWRGRFGDPDYQYALRDEIFRRTQGEYETAADYLTCLRALLSRMXPPW
FT                 XLEEQLNFAHRNMLPRMQIAIRRQEFRDFATLEYLATCXERSLQAEKHYRP
FT                 PYRRNNPSFRIWHTTRRRVRPKTPLPLLPLTLPPKRXRRRKPLKPRARIPH
FT                 LPIPLPLPLPLPNHRQALPLSPIPPATNPEREYRIYRYRYRCRCRYRTIDK
FT                 RYRYPQSPQQHKMLELRXDRTSRARMYRTAPEILLPLRETRCYRSDLPDLL
FT                 GKREPEPVERVPTTPSPESETQVTASDTVGDDTLLHSYVTLGREELPSLRF
FT                 FKIKIYNYTLAALVDSGSNRTLLGREGIKIIRELGLDTERGRGIQIRTANG
FT                 QIASIREEIKIPLELEDQCREVTVALLPNLAVPCILGLDFLTKFGVILDFA
FT                 TNGWYFAESPHKRYRLVTEADPHESSCCGISELTPAQERTLEFFLRTLPQT
FT                 SDSPGVTALTEHKIDVGDSPPIKQRCYLVSPKVQEAIRRRPIKCSRRELSN
FT                 RRIASGRTPS"
FT   CDS           join(4167..5942,5946..6611)
FT                 /product="Gypsy-13_CFl-I_2p"
FT                 /translation="SGSRLRSNQGPFSYRTDTSLSRFRVTVYLTYRCEFRG
FT                 IRRGIDSDRRGRRKGNSFCESSLVRSRNPIFRYRTGMFSSRVGNQKFRPYL
FT                 EGYRFTVVTDHSSLRWLHNLKNPTGRLARWALELLEYDYEVIHRKGALHHV
FT                 PDALSRMFESEATEDTVPAATNSVHVTAAIDTVDLANTTDEWYRKRYKEVM
FT                 ATPEKYTQWKVIDGRLYFLRPKRVVSEIVEDLDRWKLVIPREYRREVLRES
FT                 HDMPQAGHLGTEKTYQRVAVSYFWPNLFREVTEYIRQCDTCQRTKVEQASP
FT                 AGLMGRRIADGPWTAIAADIIGPLPRSKAGFQYLLVIQDLFTKWVECKPLR
FT                 AATGPKISEAIDDLVISRWGAPKFLLTDNGTEFVNKIMKAFAEDRQITHTT
FT                 VPPYHPQANPVERVNRILKTMIIAFIEKDHREWDEHIADFRFAYNTACHSS
FT                 LGASPAFLNLGRELEPVHSVSQRSQGVTEIEPGDTARWAARMKDMQALREW
FT                 VIENLDRAYERQASRYNLRRRDHAFKVGDLVLKRQHVLSSAAQNIAAKLAH
FT                 KFQGPFKVVRVISPVVYELGLLDGSPAGKSHIQDLKPYRLPDTVIMPRNVM
FT                 DRREMRRIWRAFWSRHRSVWEHIEFHDEGFWTDLEDVARQVRAARWTTDGA
FT                 VVREWPSTRSTSAQTAPGQGIARGTQTDPPEPAEGSTPRGRTRSLERPAEP
FT                 GPGRRPPEPSAGRLPQRQPYAVGCWNCGSPRHSYAXCPLPRTGSFCYGCGQ
FT                 QGVTLRDCGRCGAAYRRTAPLHGARGPRAPRSPPPARDESPLRDGWPWARD
FT                 VGDGWTEGPXLR"
XX
SQ   Sequence 7198 BP; 1684 A; 1676 C; 1849 G; 1955 T; 34 other;
     aagattttgg cgcccaacgt ggggcccgac gccgtgtgaa gatgccgtgt aatagaattt        60
     ttttcttttt ctattttttc tgagagagtt agagagagag agagagggag agagagcgtt       120
     ttctttctct cgtcgacaag ttaaggtgaa aaaggaaaaa atcgacaatt aagtgttgtg       180
     cttcattaat gtgtctgtgt cgttagaata tttgttagca gtggtttttt attttttatg       240
     gtgtcctgta ccgaacgtac cgtctggttg gggtaagtta agaattattg aaggccctaa       300
     agcggcctgg aatttgtgtg ctgcacgtat aaaaattacc gaataccgta taatattgta       360
     tagagtttat ttgcattttt ttttctcttt cctttctttt cttcttttcg tttccgtttt       420
     gacttagagt cagctaccgt tcttggcgtt accgataatt cgaatttatc tccgttattt       480
     attgtcatat tgaatcttgt gtggtgaaaa ttatatattt gttttttctc gttaataccg       540
     ttagtggctc cgtgagtaaa ctctaaaggg acaatttaat aaattttttt tttttttgga       600
     gaccacgcga ccgttccttt gaacaacaag agacttattt tgattttcat tttttttatt       660
     accgctaaga tctttaggct tttcgtattt cttataccgt ttaaactttt aaattttgtt       720
     tttctgtctg taccgttatc cttagtatta ttagtttttt tttcgttccc ttttcttgta       780
     ccatattatt attttgattt ttgaatttct tttatgatac cttgttgttt ttattttttt       840
     tttaaatttt ctttttccta tagcatattg ttttgatttt tgaatttttt tttctttcct       900
     gctatccgat tgtttgtttt ttgaatttct ttttctgctg ccgtattgtt tgacttttga       960
     cttttttttt tccgtcactt atattatttt gaatctcctt ttcgttaccg tactattttg      1020
     atttcgaaat attattttga tttttaactt ttttttcctt gctcttatat tgtttttttt      1080
     tgttttttta tttcttttat ttctatactt cggccgtatt atttcgattt taaataaaat      1140
     ttttttttat ttcggtctct ttcccgtacc gtttccaatt ttgaatttat tctttggtca      1200
     tattatctcg accttctaca ttttttttta tttatttatt ttattttatt tattttattt      1260
     tatttattta ttttatttat ttatttttat ttattttttt atttttattt ttttttatat      1320
     tattactacc gttttctttc ttttttttat tttattagct acctcattta tttttttttg      1380
     tttttgttgt aattttcgct aatcggtaag tctctcgttg gccctatgag ggaggatagc      1440
     gatccacatc agtggataca gggattaagc gtcggtcaag cgcgtcgcca cttgttagat      1500
     tggggcctga gtgcccaagg gatattgccg gttttgcggg cacggctcct caggtacgag      1560
     gcggtagcga ggaaaccgag gaggaagaag atacgatgtc cgtagaggat caaggtggtg      1620
     cgagggcgcg agamstcctg ggggagggcg mcgcgmccga cctgmggggc ccaccgccck      1680
     tgkgggggca agamgtaaaa ttsgwcgacg tcgcgggggg agatgccgga taccgtccaa      1740
     cccmgcgcga gcctgcggcc gcgcmamcck ckagttcccg tccggggagg gcctcgacgg      1800
     cggaggccta caacctgatg aggaaatgga acctccattt ctcgggmaaa cggggtaacg      1860
     acgcggaagc cttcctgttg mggattaagg aggcccgcgc gatagtcccc atctcagacg      1920
     ccgacctttt taagtgcctg cctctcttcc tgtcggaagt cgcgttatat tgggtgcgat      1980
     tggaaagcgg aaactggcga gattggaatg attttgaggc agcatggagg gggcgattcg      2040
     gggatcccga ctatcaatac gcgcttcgcg acgagatatt caggcggaca cagggggaat      2100
     acgaaaccgc ggccgactat ttaacctgct tamgggcctt gctgagtcga atgwcgcccc      2160
     cctggsccct ggaggaacaa ttaaacttcg cccaccggaa catgctaccg cgkatgcaaa      2220
     tagcgattcg acgccaagag tttagagact tcgcgactct tgaataccta gccacgtgca      2280
     tsgagagaag cctgcaagcc gaaaaacact accgaccccc gtaccgccgg aacaatccct      2340
     ctttccggat ttggcatacc acgcgccgaa gagtaagacc aaaaacgccg ttaccgttgc      2400
     taccgctaac gctaccgcca aaaagaaaka gaagaagaaa gccgctaaaa ccccgagcgc      2460
     gaataccgca tctaccgata ccgctaccgc tgccgctgcc gctaccgaac catcgacaag      2520
     cgctaccgtt atccccaatc cccccagcaa cataaaatgc tggaactgcg akaagacagg      2580
     acatcgcgcg cgcggatgta ccgaaccgcg ccggaaatat tgttaccgct gcgggaaacg      2640
     cgatgctacc gttcagactt gcccgacctg ctcgggaaac gagaaccgga gccagtagag      2700
     agggtcccta cgactccgag tcccgaaagc gagacccaag ttaccgcgtc agataccgta      2760
     ggggacgata cgttactcca ttcgtatgtc accctgggaa gggaagagtt accgtcgcta      2820
     agatttttca aaattaagat atacaattac actctcgcgg ccctcgtgga ctcggggtcc      2880
     aatcgcaccc tactgggccg cgaagggata aagattatcc gagaattagg actggatacc      2940
     gagagaggaa gggggataca aataagaaca gcgaacggac aaatcgcaag tataagggag      3000
     gaaattaaaa taccgttaga attggaagat cagtgccgcg aagttaccgt agcgttgtta      3060
     ccgaatttag ccgtcccgtg tattttagga ctagactttc tcacgaaatt cggagtcata      3120
     ttggattttg ccactaacgg atggtatttt gccgaatccc cacacaagag atatcgttta      3180
     gttaccgaag cagatccaca cgagagctct tgttgcggga tatcggaatt aacccccgca      3240
     caagaaagga cattggaatt ttttttacgg acgttaccgc aaacgtccga tagccccggg      3300
     gtgaccgcgc ttaccgaaca taagatagac gtgggtgaca gcccaccgat taaacagcgt      3360
     tgttacttag tatcgcctaa ggttcaggaa gctatacggc ggagaccgat aaaatgctcc      3420
     aggcgggaat tatcgaaccg tcgtatagcg agtggtcgaa ccccatcgtg atggtgaaaa      3480
     aacctaacgg gaagtaccgc ttttgtctag atttccggag agttaatggc gtatcgaaga      3540
     aagacgcgta tccgctaccg aatatgaacg ggattcttga caaattacgc tcggctcgct      3600
     atatctcgac catcgatctg agtcaggcct acttccagat accgttagcc aaggaaagtc      3660
     gggagattac cgcgtttagt gttcccggga agggactttt ccattttacg cgaatgccat      3720
     acgggcttac gggagcgccg gcaactttcc aacgattgtt agaccgatta atagggccgg      3780
     aaatggagtg aaatggagcc acacgcgttc gcgtatttgg acgatatcgt catagtaacg      3840
     ccgacattcg aagaacacat gacttggctc aggaaagtgc tggataaaat cactgccgcc      3900
     ggccttaccg ttaatccgga taagtgtgaa ttttgccgtt ctcaggtacg atacctggga      3960
     tttatcgtgc agagggaggg gctgacggtg gatccggaaa agactcgacc gatcttagaa      4020
     taccccgcac cgcgaaatat taagcaatta cgccggtttt tgggaatgtc atcctggtac      4080
     cgcagattca tcccgcaatt cgcgaccctt agcgagccat tgacgcggct tttgaaaaag      4140
     ggcaagcgct gggagtgggg ggatgatcag ggtcgcgcct tcgatcaaat cagggaccat      4200
     ttagttaccg caccgacact agcctgtcca gatttcgagt taccgtttac cttacatacc      4260
     gatgcgagtt ccgtgggatt aggcgcggta ttgactcaga tcgtcgagga cgaagaaagg      4320
     gtaatagctt ttgcgagtcg agccttgtca gatcccgaaa cccgatattc cgttaccgaa      4380
     caggaatgtt tagcagtcgt gtgggcaatc agaaatttag accgtactta gagggatacc      4440
     gttttaccgt tgttaccgac catagtagct tacgttggct tcataacctt aagaacccca      4500
     cagggagatt agcaaggtgg gcgttagaat tattggaata tgattacgag gtgattcacc      4560
     ggaagggtgc cctacaccat gtgcccgatg cactctcccg aatgttcgaa tcggaggcta      4620
     ccgaagatac cgtaccggcc gcgacaaatt ccgttcacgt gactgccgct atagataccg      4680
     tagacttggc gaacactacc gacgagtggt accgtaaaag atataaagaa gtaatggcga      4740
     ctcccgaaaa atacacgcag tggaaagtga ttgatgggcg attatatttt ctcaggccga      4800
     aacgcgtagt ctcggaaatt gtggaagatt tagaccgttg gaagttagtg ataccgcgag      4860
     aatatcgaag ggaagtgtta agagaatcgc acgatatgcc gcaggcaggc cacttaggta      4920
     ccgaaaaaac ttatcaacga gtcgccgttt cctatttctg gccgaattta ttccgcgaag      4980
     ttaccgaata catccgacaa tgtgatacct gccagcgaac gaaagtcgag caggcaagtc      5040
     ccgcgggtct catgggacgt cgtatcgcgg atggaccatg gacggcaata gcggccgaca      5100
     ttataggccc gttaccgcga agtaaggctg gattccagta cctcctggta atccaagacc      5160
     tttttacgaa atgggtggag tgcaaaccct taagagccgc gacaggccca aaaattagcg      5220
     aggcgatcga cgacctggtg atatcgcgat ggggagctcc gaaattctta ttaacggata      5280
     acggtaccga attcgtgaat aagattatga aggcgtttgc cgaagatcgg caaatcacac      5340
     acactaccgt gcctccatat cacccacagg ctaatcccgt agagcgcgta aatcgaatcc      5400
     taaaaacgat gattatcgcg tttattgaaa aggatcatcg ggagtgggat gaacacatcg      5460
     cggatttccg gttcgcatac aataccgcct gccattcatc attgggagca tctcccgcct      5520
     tcctgaatct tgggcgkgag ttagagccgg tacactcagt gagccaacgc agtcaggggg      5580
     ttaccgagat cgaaccgggg gataccgcaa gatgggcagc ccgaatgaag gacatgcaag      5640
     ccctgaggga atgggttatc gagaacttag acagagccta cgagagacag gcttcscggt      5700
     ataacttacg taggcgtgat cacgcgttca aggtgggaga tctggtgctg aaacgccagc      5760
     acgttttgtc gtcggcggct caaaatatag ccgccaaact agcacacaag ttccagggcc      5820
     cgtttaaggt ggtgcgggtg atctctccgg tggtctacga gttgggacta ctggatgggt      5880
     cgcccgccgg taagagccac atacaagact tgaaaccata ccgccttccc gataccgtta      5940
     tttagatgcc gaggaacgtg atggaccgac gtgagatgcg gaggatctgg cgggccttct      6000
     ggtcgcgtca caggtccgtc tgggagcaca tcgagttcca cgatgagggc ttctggacgg      6060
     atctggagga cgtggcccgc caggtccgag cagcccgctg gacgacggac ggggccgtgg      6120
     tgcgggagtg gccgtccacg cggagcacct cggcgcagac ggcgcccggc caggggatcg      6180
     cgcgggggac acagaccgac ccccccgagc ccgccgaggg gtccacgccg cggggacgta      6240
     cccggtcgct ggagcgcccc gcagagccgg gaccgggccg gcgacctcct gagccatccg      6300
     cgggacgcct gccgcagcgc cagccatacg cggtsgggtg ctggaactgc ggttcccccc      6360
     ggcactcgta cgcgsgttgc cccctgcccc gcaccggtag cttctgctac gggtgtgggc      6420
     aacagggggt aacgctgcgg gactgcgggc gctgtggggc cgcgtaccgg cgcacggcgc      6480
     ccctacacgg cgcgcgggga ccgcgagcac cccgatcccc accaccagcg cgggacgagt      6540
     cgcccctccg ggatgggtgg ccctgggcga gggacgtggg cgacgggtgg acggagggac      6600
     cssccctccg ttaaagacct ttgtgttttc ttttgttata gtattctctg kctttgtttc      6660
     cttttctttg gcttcttgtc tckttaaaat ttttttttcg tttttcttct tttttttctt      6720
     ttccttttct tttcttttgt tgcttctttt tttttcccag tgtctttttt ttgattatat      6780
     acmgttttgt atttcttttc tttttccttt ttgtatttgg tttcgttttt ttcttgttgt      6840
     tttgtggcaa aagtcgaccc gaagggggtc ggaataaatg agctccgcaa cttgackcca      6900
     agttcgatca attcccccta ccgtttccta atccctcatc tccttacggt tattaaaagc      6960
     ggagataacg ggtgtgcgaa aataccgcgg ggggggggac gcgacggctg aagtcgagac      7020
     cggaccttac gaggaagcgg aaacgtgcga cggactgtcg aactgcggac acctgaaaga      7080
     agcccggagg gaaaagtagc cgcctcatcg cagggaatgg aagtgaagct gcctgagcga      7140
     cggtcgtcgg tgtgccgggt tctgaagtcc cctcggcacc cgtctgggaa gggggagt        7198
//
ID   Gypsy-13_CFl-LTR repbase;    DNA;    INV; 2425 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2425
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1033-1033 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2425 BP; 584 A; 569 C; 585 G; 677 T; 10 other;
     tgtgacgtga cgctttttga gctccgtcac ggtgaccccg ccgaggggag aaagcgagcg        60
     cggggtcgtc cctcgcgcct gaggggggcc gataatattm cgattgaatg tattttccag       120
     cctagwttta agtttcktga gtagagtgcg gcagccgtgc gagcgtgcgt tatctctata       180
     tgtacatgaa gatcccgtaa gataccgagt gaagaagaag atatatgagg atcccgaata       240
     taccgcagag aagggactca gaatggacca aaggttaccg cagaaaaaga ggtcaagtac       300
     cgagatcccg cgccgccgcc aatcatatac cggaaccata ttaatcccgg cgattttcag       360
     ataaaagacg gcggagaatc cggacggcga agccacgagc aacctcccag gcggccgact       420
     gggaaacgga ggcgaagcag acgaggatac ggcctggcca gccggtcccg tctaagcgaa       480
     caagagctac cgtttgagac gtcgtcagcg gattctgggc ccctgtggaa gggcaaccga       540
     ccgtcagcag ccaaaatttt gaaggggcgg agagtcgacc ccctctcgct aatcttggag       600
     aaggtgcgcg gaaaatcggc gcgggaatcg agggcctcgc ggacccattc cgttctcgkc       660
     actgttcggt gagtcgtgag ccgtgaagac gaccccggag agctacggac ctagaggaga       720
     cgatcgaccc aggaagccgc cgccgaatac tgtaagccgt cgcacgggta gctataagat       780
     ttctttgttt cccgggggca gctggtgtca cgattctagg tgtaccgtcg cggggcgacg       840
     actataccgt actagttcgt gtagaaagcc gacgagcttg attcgcgtat aattgccgga       900
     cgccagctga cgccgggcgt cgcggatttg tccctctcag gggggttcgt gccgacagtc       960
     tcataccgta ccgtatcgta ccgtttcgta tcgtatcgtt ttgtattttg ttttaccgta      1020
     cgtgtcgtgc cgaattgcaa gtcccggcgg ggcgtgaaat tctggccgtt ccgtaccgcg      1080
     taaagaaaag cgggawttgc gcggggattt tcttggcgag cctgggttac cgtaaattcg      1140
     aaaagctgct ctgcaagaaa attatctacc gcgaactctc cgccgagaga tatgtaaccg      1200
     ttactattcg tttgaaatta tattgcttcg agtcagttgt tgccgaggat aaaaggtcgc      1260
     gataagaccg ttgaatagag cacaataata tccgcattaa tatcctcgag attaccgttg      1320
     caaatagcct ctaataaata ttgaatgtat tgtcgctcgc catcacggat tattgtaaag      1380
     aaaacgtcga tgcgatttat atcgaaatct tttgggaggc gtgtgccttt gaaattatac      1440
     cgaaattata ctcaattatt cccctstgct cgttatcagt tactttcgaa tatcagcatt      1500
     ataagttacc gtcaaaaatc acacaaagtt tsgttcgatt tatatcgaga ttgcgcacga      1560
     ggctcgtgcc tccgagtgtg ttccgaaatc gtacgcgtct gctgtactcc gatcgtgagt      1620
     cgtatctcgc aattgattac cgctgattac cgctgattat tgtggggaat acaattcaat      1680
     ttatatcgaa atctcttagc gaggctcgtg cctcggagcg tgttctgaaa tctggcgtaa      1740
     tattgtmtct cgagtgttaa agattacctc gccgttaatt attatttgat ctttcttacc      1800
     gcgattcgag aaatattata ttcgttttca tatcgttttc accgttgtat tatagtcgcg      1860
     cattatgaat agattatttc cgttatgatt acatgtgacc ttcgcgttat ccgttataag      1920
     tcttaagtcc tttgtctttc aaactcgtat tatcgattgt ttatattccg agatttatct      1980
     gttctttctt ttgttttttt tatctaccga atcttatcta tcatattatt cttgtctctg      2040
     ttacattgtt tactctgtat tctaactgtt taatatattt taagtaattg taagtaagat      2100
     taactcagtg tcgattattt ctctcttcca caaattatct agcgttctct ctctatatat      2160
     aattcacaaa gaaccctgcc cctctgccac atactgagcc ctgggttacc ggatattacc      2220
     gttaccgtat cgttatcgtg gcgcggaaat accgcgcctg gcgcccaatt tcactctcct      2280
     ttccggggag ttacaagata ccgtacgcta ccgtaatctt tgaagatacc gccttaamaa      2340
     cttttaatac taawtaccgt atcggccaaa gcttgcacgc taccccctcg ggatcggcgt      2400
     tctcgaggtg ggcaacggcg tcgca                                            2425
//
ID   Gypsy-13_CoFl-I repbase;    DNA;    INV; 4649 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-4649
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2294-2294 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           263..1306
FT                 /product="Gypsy-13_CoFl-I_1p"
FT                 /translation="MSGRGRGFSSGSEGTPRASDRQAGRSAPTLQESAAAL
FT                 AAAELRRTAPPAPNALQAEEPSKRAPTDTHKPASPEPRTEQGEHWEDAEES
FT                 PAAVMAANPSNMLQRFWRDEPELWFMQAEEIFSANKVTDDALKYGAVYSAL
FT                 DKETLRDLVDLLKNKPETDRYDFLKAALMKRLAESKEVALRRLLTNVELGD
FT                 STPSQLWRKMKALAGEADDGLVKALWLSKLPCHAQTLLQAFKSATTPVEEL
FT                 TEAADSLVSSAAQINAVSSNDAIARQLQQSNVLMSQMLTALKACLPRTNNN
FT                 NNNNNSNAGRRNNRARSRSRSRTRQQEVNKDYCWYHNKFGSKARSCQAPCS
FT                 FPQEN"
FT   CDS           1273..4647
FT                 /product="Gypsy-13_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LSGALLFSPGKLVTPASMQVAETGNHPREHRLHILDT
FT                 RSKTFFLIDTGSIVSLLPKAQAKGKLTQQALTLSAANQTDIHTYGARKMLL
FT                 NLGLRRDFECDVIVADVPHAILGADFLARHGLLPDLQKRRLIDRLTGLSAP
FT                 GHLAMAGVFSVSTIIPARGSDCPYAQQYTQLLQDFKDVFEPSSTPIRVPDL
FT                 PVRHTITTTGPPVSERPRRLAGEKLAAAKRAFAELLDRGIIRPSSSQWASP
FT                 LHMVPKKDGSWRVTGDYRRLNACTIPDRYPLPMIEDLLQESRGNIFSAVDL
FT                 QKAFYQIPIAEEDVEKTAVTTPFGLYEFLGTSLGLRNATQSAQRTMDHILR
FT                 KLPFVKGYVDDLLIISQSHEEHLRHLRQLLETLREAKLKINAEKCTIGQPQ
FT                 ALFLGYLVSRDGFQPPPAKVEAIKSFARPNTATELRRFLGMANYYRRCIPS
FT                 AAQTQAPLHELLKGLPKKAQLAWTPQADLAFRQCRNSIAEAACTAFLRPDA
FT                 PLALRTDASDVAIGAVLEQQRPDAFWEPLGFFSQKLTSAQCKYSTYDRELL
FT                 AVHEAIKHFERILEGRTFVIYTDHRPLVHSAHQRSDRASPRQARHLEYILR
FT                 FNAKFQHTRGRDNLVADALSRMLIAQTVPEQHHQDSKPTSTTTTTHVSKAH
FT                 VAPAEDFTAANDPKVDTATITMPAALDTRAIAEAQAADEQLPSLLDDQGAL
FT                 QLLQVQKDGASLYCDVSTGEVRPYLPASLRRQAFDIIHGLAHPGAKATAKA
FT                 LTRHYIWPGARKDVALWAKHCEACQRSKVSRHNREALGRFSEPDNRFEHIH
FT                 VDLIKLPLVQGMQYCLTIIDRFSRWPMAVPLPNIQASTVAKALNDNWISLF
FT                 GTPLRITSDRGAQFESALFVELARALGAKLCHTTSYHPQSNGMVERLHRTL
FT                 KAALRCCPQSWVDALPMVLLGLRSAYKEDLEASPAEMVFGTALRLPGQFFV
FT                 TSSVQANHINFVHSLKQLFLSLRPVPASRHSNNHPFSYRDLRTCSHVFLRI
FT                 DSIRKPLEPPYSGPHKVLERTGHRTFVIERAGAPKEVSVDQLKPAYLEAEA
FT                 RNGPADDYIAEPIITAQHTQPSPPLTSPTAAPQVETQATQPEPTPAAQKAS
FT                 RHVSFPAVTKLVTGGGV"
XX
SQ   Sequence 4649 BP; 1018 A; 1499 C; 1267 G; 864 T; 1 other;
     gtggtgaccc cgacgtgcgt cagtgttctt agagttctct ctcacgcgct gcaaatggtg        60
     tgcgatttgg gagtagtgca gtgtgcgact ctttgacttt ttttcttttc gtctaagtgc       120
     aacaaacaaa tggaaaggac agtgcatagt gtgcgttttt ttgtgctgtg atttttctcg       180
     agcacgtgct cgtgcagtgc ggcgcccatg aacgatcgcg tgacacacat acgcgcgcac       240
     gcccgcattt ccctcgcgcc gcatgtccgg caggggccga ggcttctcgt cgggcagtga       300
     gggcacgcca cgtgcctcgg atcggcaagc aggcaggtcg gcgccaacgc tgcaggagtc       360
     tgccgctgcc cttgcagcgg ctgagttgcg gcgcaccgcg ccacccgccc ccaacgcgct       420
     gcaggctgag gagccgagca agcgcgcgcc caccgacaca cataagccag cgagccccga       480
     gccgcgcacg gagcaaggcg agcactggga ggacgctgag gagagtccgg cagcagtcat       540
     ggcagcaaac cccagcaaca tgctgcaacg cttttggcgc gacgagccgg agctctggtt       600
     catgcaggcc gaggaaatct tcagcgccaa caaagtaaca gatgatgcac tcaagtatgg       660
     tgcagtctac agtgccctgg acaaggagac acttagagac ctcgtggacc tgctcaaaaa       720
     caagccggag acagacaggt acgatttttt aaaagcagct ctgatgaagc gtttggcaga       780
     atccaaggag gtggccctga ggcgcctact caccaacgtg gagttgggag acagtacgcc       840
     ttcgcagctc tggcgcaaga tgaaggcgct ggccggagag gcggacgacg gcttggttaa       900
     agcgctgtgg ctttccaagc taccgtgcca cgcgcagaca ctcctgcagg ccttcaagtc       960
     tgcaaccact cctgtggagg agctgacaga ggcagcagac agcctagtca gctctgctgc      1020
     gcagatcaac gctgtctcgt ccaatgatgc cattgcccgt cagctgcagc agagcaacgt      1080
     gctgatgtcg cagatgttaa cggcactcaa ggcttgtctg ccgaggacga acaataacaa      1140
     caacaacaac aattcgaacg caggtcgtcg caacaaccgt gcgcgcagca ggagccgcag      1200
     ccgaactcga caacaggagg tcaacaagga ctactgttgg taccacaaca aatttggcag      1260
     caaggctcgt agctgtcagg cgccctgctc ttttccccag gaaaactagt cacgccggcc      1320
     tcgatgcagg tggctgagac cggcaaccat cctcgggagc atcgcctgca catcctcgac      1380
     actcgttcca aaacattctt tctgattgac acgggatcaa tagtctcgtt gctgcccaag      1440
     gctcaagcca aaggtaagct cacgcagcaa gcgctcactc tttcagctgc caatcagacc      1500
     gacatccaca cctacggagc acgaaaaatg ctgctgaatc tgggcctgcg acgcgacttc      1560
     gagtgcgacg ttatcgtcgc tgatgtcccg cacgccatcc tcggtgcgga cttcctggcc      1620
     agacacgggc tactgccgga cctgcagaag agacggctca tcgaccgact cacaggtctc      1680
     tcagcgcctg gccacctggc catggcgggg gtcttctcag tctccaccat cattccagcc      1740
     cgaggaagcg actgccctta tgcccagcag tacacgcagc tgctccagga cttcaaggac      1800
     gtgttcgagc ccagctccac gcctatcagg gtgccggacc taccggtcag gcacaccatc      1860
     accaccacgg gacccccagt ttcagagcgc ccaaggcgcc ttgcagggga aaagcttgca      1920
     gcggccaaga gagcgtttgc cgagctcctg gacagaggga tcattcgacc atccagcagc      1980
     cagtgggcca gcccactcca catggtgccc aagaaggatg gctcctggcg tgtcacgggt      2040
     gattacaggc gtctcaatgc ctgcaccatc ccggaccgct accccctgcc catgatcgag      2100
     gatctgctcc aggagagcag aggcaacatc ttctcngcgg tggacctcca gaaggcgttc      2160
     tatcagattc cgatcgccga ggaggacgtg gaaaagactg cggtcaccac gccctttggt      2220
     ctttatgagt ttctaggtac gtctctgggg ctccgcaacg ccacgcagtc ggctcagagg      2280
     accatggacc atatcctgcg gaagctgccc tttgtaaagg ggtacgtgga cgatctgttg      2340
     atcatctcgc agagccatga ggaacacctt cgccacctgc gtcagctcct ggaaaccctg      2400
     cgagaagcca agctgaagat caacgctgaa aaatgcacca tcggtcagcc acaggcactc      2460
     ttcctgggtt acctggtctc ccgagatggc ttccaacctc caccggccaa ggtcgaggca      2520
     atcaagagct ttgccaggcc caacaccgcc acggaactac gccgttttct cgggatggcc      2580
     aattattatc gacgctgcat tccatctgca gcccagactc aggcgccact gcatgagctg      2640
     ctcaagggcc ttcccaaaaa ggcacagctc gcgtggacgc cgcaggcgga cttggcattt      2700
     cgtcaatgcc gtaacagcat cgccgaggcg gcttgcaccg cctttcttcg acccgatgcg      2760
     ccgttggccc tcagaaccga cgcttcggat gtggcgattg gagcggtgct ggagcagcag      2820
     cgcccggatg ccttctggga acctctggga ttcttctccc agaagctcac gagtgctcag      2880
     tgcaaataca gcacttatga cagggagctg ctggcagtgc atgaggcaat caagcacttt      2940
     gagcgcattc tcgagggacg gaccttcgtc atctacacgg accaccgtcc actcgtccat      3000
     tcggctcacc agcgctcgga cagagcgtca cctcgtcaag ctcgtcacct ggagtacatc      3060
     ctgcgcttca acgccaagtt tcagcacaca cgcggccgtg acaaccttgt cgcggacgcg      3120
     ctctccagga tgctcatcgc ccaaacggtt ccggagcaac atcaccagga ctccaagcca      3180
     acgtcgacga ccaccaccac ccatgtgtcg aaagcccacg tcgcgcccgc agaggacttc      3240
     acggctgcca acgaccccaa ggtcgacaca gccaccatca cgatgcctgc cgctctggac      3300
     acacgcgcca tcgcagaggc ccaggctgct gacgagcagc taccaagcct tctcgacgat      3360
     cagggtgctc ttcagttgtt gcaggttcaa aaagatggtg ccagtctcta ctgcgacgtc      3420
     tccaccggag aagtgcggcc ctacctaccc gcctcgctgc gacgtcaggc cttcgacatc      3480
     atccacggtc tggcccaccc cggagccaag gccactgcca aggccctcac caggcattac      3540
     atttggccgg gagcccgcaa agacgtagcg ctctgggcta agcactgcga ggcctgtcaa      3600
     cgctccaagg tctcgcgcca caaccgagag gcactggggc gcttcagtga accggacaac      3660
     cgctttgagc acattcatgt ggatcttatc aagctgccct tggtccaggg gatgcagtac      3720
     tgtctaacca tcatcgacag gttctcccgc tggcccatgg cagttccatt gccaaacata      3780
     caggcatcca cagttgccaa agcgctcaac gacaactgga tcagtctctt cggcactccc      3840
     ttgcggataa cgtcggatag aggtgcgcag tttgagtcgg cgctgttcgt cgagctggcg      3900
     cgcgccctgg gagccaagct ctgccacacg acttcatacc atccgcagtc aaacggcatg      3960
     gtggaacgcc tccaccgcac ccttaaggcg gcgctcagat gctgcccgca gtcctgggtt      4020
     gacgcgctgc ccatggtgct gctcggattg cgctcggcct acaaggagga tctcgaggcc      4080
     tcgcccgcgg agatggtgtt tggtaccgcg ctccgtcttc cgggccagtt cttcgttaca      4140
     tcctcagtcc aagccaacca catcaacttt gtccacagtc tcaaacagct gttcctgtcg      4200
     ctcagaccgg tgccagcttc gagacacagc aacaaccatc ctttcagtta cagggacttg      4260
     cgaacttgct cgcacgtttt tctgcgcatt gacagcatcc gcaaaccact ggagccaccg      4320
     tactcgggac cacacaaggt gctcgaacgc acagggcacc gcacctttgt catcgagcgc      4380
     gctggggctc ctaaggaggt ttctgtggac cagctcaaac cagcctacct ggaggctgag      4440
     gcacgcaatg gccccgcaga cgactacatc gctgagccca tcatcacagc tcaacacact      4500
     cagccgtctc cgccgctcac atctccgaca gctgcccccc aggtcgaaac tcaggccaca      4560
     cagcctgagc caactccagc tgctcagaaa gcttcgcgac atgtctcgtt tccagctgta      4620
     accaagctgg tcactggagg gggagtgga                                        4649
//
ID   Gypsy-13_CoFl-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-454
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2307-2307 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 454 BP; 106 A; 141 C; 106 G; 101 T; 0 other;
     tgtggcgact cagccgacac gcctggcgcc atctggcagg cgcaagcaac agctcattcc        60
     tcgcgagctc tactaactcg ccatctgcag cggatgcgca cgcagcgcgc acggcgttct       120
     ctctcttcca ctcgcgggcc ggaggccgcc tcagctgtgg cacggcgcag gccgaagaag       180
     aagtgcgcgc ggccatcaga gtttcctctc cgtctgctca agacgcacgc aacgctgccg       240
     agaccaagaa gccgcatggc tgacttaagc agccatgcga gccggcatac agactttaca       300
     aatccgtttc catcacaatt cactttacat cattttgtac ttagattagt tgttaagtgt       360
     tattaaagag ttcatgaaca ttataccatt agtattttct ctgcacgcac tttccctttg       420
     gcggcaacgc cgaaccatcg caacaatatc caaa                                   454
//
ID   Gypsy-13_CQ-I repbase;    DNA;    INV; 6765 BP.
XX
AC   AAWU01032992;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_CQ_;
KW   Gypsy-13_CQ-LTR; Gypsy-13_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6765
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 405-405 (2011).
XX
DR   Genome; AAWU01032992; Positions    8267    1503.
XX
CC   Positions [5352-5828] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1221..2990
FT                 /product="Gypsy-13_CQ-I_2p"
FT                 /translation="MAEEEEEIFLTSSETSATESSGTESETESSDSTGESV
FT                 KSSSPVMNIKKMNPKQIKRLTISPRFMRKLSEVYASKSQEQKKRCEKDDPA
FT                 KKKSPIPDPPPSPPKPKPDSPKSDPPNPDPQNPESSKSKPSKDKKNKKKED
FT                 ESGKKNKKKSKSKDDKGGAPDLDLDKPPNLDDVKPDDSEKLLPPGFNIKSA
FT                 SFENVNFSNNPLFYSMNTSGRANKKTLPISQWPIKYSGTDNGIGLNLFLRR
FT                 VEFFAHSERVTKSELFESAHLLLVGPAQDWFVSKWPTFRNEDWDFFIHALR
FT                 HQYLPNNIDHYIKVRSFSMSQNKNETFSNFLVRMEQFFLCRTTPLAEEDKF
FT                 DIIWHTMKWHYRDRLALIKRKGMSIIELEDLCGRIDNCNEGLMNRLVQSFD
FT                 NHNIHEIITEGPSTSYKLQEPHERRRNQQNQSQLVNQSREDRDNHAGQLTT
FT                 RNNQTNQQNSNRHNQANQNTTRSSQSNQNHSNTGQSSSYNQNNYRNNQQQQ
FT                 QNYQNTNRNQNTQERGRTQEEFYPENGWRSLNRDQILHYYKQPDGRICLNC
FT                 RKFGHHFSTCYSRRNVFCCICGLPEFHYEECPFCEEKNRRREN"
FT   CDS           3047..4915
FT                 /product="Gypsy-13_CQ-I_1p"
FT                 /translation="MIDLFQQIADEVDVGGECASDSEHSDREYERTFESVN
FT                 EVCVDFSGDQRYFLKFNVLGLQLHGLLDSGSNVSIVGENFGNLTSFLEIQP
FT                 LENEISISTASGDAMEVLGFVDVPFNVDRVTKILPCLVVPELDNRCILGMD
FT                 FFKLFNITLSFSGCDRNNVCCIEQSTYFVNNTESSQNLNPDSHVLTAEEAE
FT                 QLKVISDSFKVSKPGTLETCNVMEHTIELSDSTPIHLNPHPFSPAIQKKVY
FT                 TEIDRLLKMEIIEPSRSDWALHVVPVQKESGEMRLCLDARKLNAKTIRDAY
FT                 PLASTMRIISNLGKNKYFSVIDLKESFLQVMLSEESRRLCSFKIIGRGLYQ
FT                 YKRLPFGLINSSATLSRILDKVLKEGMFEPYIFSYLDDIIVATETFEDHVK
FT                 YLKIVSECLREANLSVNIDKCKFCLRKIKYLGFILSEEGYQPNPERVAAIS
FT                 KFVRPQTPKEIRRFLGMAGYYRNFIPNFGGIAAPISDLLKGKPKKVQWNDQ
FT                 AEHAFIKLKECLMSEPVLANPDWSKEFKIQTDASDLAIAGILTQEVEGKEH
FT                 IIAYFSRKLRSCEKKYAATEKEGLAALESIDHFRTYVEGSHFELITDCSAV
FT                 TYIRDSKWRPGSRLSRWSVQLQAMR"
XX
SQ   Sequence 6765 BP; 2245 A; 1028 C; 1427 G; 2065 T; 0 other;
     ggaaatggta ctcctgctat tcaatagtac tccatcttgt ctcatgctcg cactttccct        60
     ggaaatgggg aggtgacaaa atggcgccca acgttaataa aagtacagca gaatcaatta       120
     ccagtgtctt ctgaacaatc agccattttg aaaaggattt ttcagcgttg ctttttgtga       180
     aataaaagaa gattttgtac atttagtttg taatcttctt attcttcgct gttgtaaata       240
     attttcccat tttttggact tttgtaaata atttccctag ctttagaaac ttgtaaataa       300
     ttcactaatt ttagaatttt gtaaataata tactaatatt tagttataat tgtaaataat       360
     ttgcaaatgg aattgtaaat aaccctgaac gtggaaaatt ttgtaaattt tgtacataat       420
     tttgaactaa tcatatattc tctcctgatt ttgattttct aggattatgt gatcaattca       480
     agagatcgcc aacgatggaa tagtgtacac acacaagaat tgatgaaaag tgataaattt       540
     gaaacataaa actgtaaata gatcgttttg gttgggatta atttgatttt tctcccagat       600
     gtagttgagg ttgaagtgat catgagaatt ctttgtaaat atttcaatac gagaagtgat       660
     ggggggaaat gttgtatatt ttgtacattt gtatatatga ttttttttgg ctgtaaataa       720
     atgacgaatt tgaacttgca tgaattttaa ctactttaag aagaaaacat aaaaaagaag       780
     aagttttgca ggatgaaacc ggcctcgctg gagacttgag tccaagacga tgacggtcag       840
     taataggatc ttgattggat ctcgaattcg gtcttgataa cctggaaaca gcgctgagtc       900
     actgacgatg acgccctatg accccgagga gtaacgattt atcggaggtt gattcttgtc       960
     tgactgattc ttaccaaaaa acattagaac ttttagaatt ttgcatgaat atttattatt      1020
     ttaattctag taaatggtgg atttggaaat gaagcaggat gaaggccgat tctcaaagta      1080
     tcgttcatgt aaacagtttt tgctagaaaa gtataatttg ttgtgtgagt gatttggaaa      1140
     tctattcaat catttttatc ttatttattt atttattttt ttaaattgtg cttgtgaaag      1200
     attaagtgaa aaaggacact atggctgaag aagaagagga aattttcttg acctcatctg      1260
     agaccagtgc tacggaatca tcgggtactg agagtgaaac tgaaagtagt gatagtacgg      1320
     gtgaaagcgt taaaagttct agtccggtta tgaatattaa gaaaatgaac cccaagcaga      1380
     tcaaaaggtt gacaatttcg ccgagattta tgaggaagtt atctgaagtt tatgcaagca      1440
     aatcacaaga gcagaaaaaa aggtgtgaaa aagatgatcc tgcaaagaag aagagtccca      1500
     tccctgatcc tcccccgtcg ccaccaaaac ctaaacctga ttccccaaaa tctgatcctc      1560
     caaatcctga tcctcaaaat cccgaatcat caaaatcaaa accatccaaa gataagaaga      1620
     acaagaagaa ggaagatgag tcagggaaga agaataagaa gaaatctaaa tctaaagatg      1680
     ataagggagg tgcacctgat ttagaccttg ataagccacc taatttagat gatgttaagc      1740
     cggatgactc tgaaaaactt ttgccgcctg gatttaacat aaaatcagct tcttttgaga      1800
     atgttaattt ttcgaataat ccgttgtttt acagcatgaa cacttctggt agggcgaata      1860
     agaagacttt accaatatcg cagtggccca tcaaatacag tggcacagac aatggtatag      1920
     ggttgaattt gtttttgcgc agagtagaat tttttgctca ttctgagcgg gtgactaaat      1980
     cagagctgtt tgaatcagca catttgttac tggttgggcc agctcaggat tggtttgttt      2040
     cgaagtggcc gacttttagg aatgaagatt gggatttttt cattcatgct ttgagacatc      2100
     agtacctgcc gaacaacatt gatcattaca tcaaagtgag atcgttttct atgtctcaaa      2160
     acaaaaatga aactttctca aactttttgg tcaggatgga gcagttcttt ttatgccgaa      2220
     caacaccact agctgaggaa gacaaatttg atattatttg gcacacaatg aagtggcact      2280
     acagggacag gttggcgctt atcaaaagga agggaatgag catcattgag ctagaagatc      2340
     tatgtggcag aattgataat tgcaatgaag ggttgatgaa tcgtctggta cagtcgtttg      2400
     ataatcataa tattcacgaa atcattacgg aaggaccatc tacgagttac aaactgcaag      2460
     aacctcatga gcgtaggaga aatcaacaaa atcagagcca gttagttaat caaagtcgtg      2520
     aggataggga caatcatgca ggtcaattaa caacaaggaa taatcaaaca aatcaacaaa      2580
     atagcaaccg acacaatcaa gcaaaccaaa atacaacaag atctagtcag tctaaccaaa      2640
     atcattcaaa tactggtcag tctagttcat acaatcaaaa caactataga aacaaccagc      2700
     aacaacaaca aaattaccag aatacaaaca gaaatcaaaa tactcaagaa agaggaagaa      2760
     cgcaagaaga gttctatcca gagaatggtt ggagatcgtt aaatagggat caaattttgc      2820
     attattacaa acaacctgat ggtcgtattt gtttaaattg tcgtaagttt ggacatcatt      2880
     ttagtacctg ttattctcgt cgcaatgttt tttgttgtat ttgtggtttg ccagaatttc      2940
     attatgagga gtgtccgttc tgtgaagaaa aaaacaggcg aagggaaaat tgaaggaggt      3000
     ggttttcccc tcccccgcaa atcctccagg tgggagaact gaaccgatga tagatttatt      3060
     tcagcaaata gcagatgaag ttgatgtggg tggagagtgt gcatctgatt cagagcattc      3120
     tgatagggaa tatgaaagga catttgaaag tgtgaatgaa gtttgtgttg attttagtgg      3180
     cgatcagaga tattttctaa aattcaatgt tttagggttg caactgcatg gattgttaga      3240
     cagtggtagt aatgtgtcaa ttgtaggaga aaattttgga aatcttacta gttttttgga      3300
     gattcaaccg ttagagaatg agatttcaat ttcgacagca agtggtgatg cgatggaagt      3360
     tttaggtttt gttgatgtac cttttaatgt ggatagagtt actaaaattt tgccttgttt      3420
     agttgtaccg gagttagaca acaggtgcat acttgggatg gattttttta aactgtttaa      3480
     tattactttg tcattttctg gttgtgatcg taataatgtg tgttgtattg agcagtcaac      3540
     ttattttgtt aacaatactg aatctagtca aaatctaaat cccgattctc atgtcctcac      3600
     tgctgaggaa gcagagcaat tgaaagtaat ctctgattca tttaaggtgt caaaaccagg      3660
     gactttagaa acgtgtaatg ttatggaaca cacaattgaa cttagtgata gcactccaat      3720
     tcatcttaat ccacacccat tttcacctgc gattcaaaag aaagtttaca cagaaattga      3780
     tcgtttactt aagatggaaa ttatagagcc ttcaagatct gactgggctt tgcatgttgt      3840
     tccagttcag aaagaaagcg gtgaaatgag actgtgtctt gatgctagaa agttaaatgc      3900
     gaaaacaatt agggatgctt atccattggc aagtacaatg agaattatca gtaacttagg      3960
     caaaaataaa tacttttctg tgatagattt aaaggagtcg tttctgcaag tgatgttgtc      4020
     tgaggagtct aggagattat gtagtttcaa aataatagga agaggtttat accaatacaa      4080
     acgattacca tttggactaa taaatagtag tgcaactttg tccaggattt tagataaagt      4140
     tttgaaagag ggaatgttcg agccatatat tttttcctat ctcgatgaca tcattgttgc      4200
     gacagagact tttgaagatc atgtgaagta tttaaaaatt gtgtccgagt gtttacgtga      4260
     agcaaatctg tctgtgaata ttgataaatg taaattctgt ctgcgtaaaa tcaaatattt      4320
     aggtttcatt ctttctgaag agggctatca acccaaccct gagagagtgg cagcgatctc      4380
     caagtttgtt agaccacaaa ctccaaagga gattcgcaga tttttgggga tggcaggata      4440
     ttatcgtaat tttattccaa attttggcgg gattgcagcc ccaatctcag atttgctcaa      4500
     aggtaaaccc aagaaggttc agtggaacga tcaggctgaa catgctttta ttaaactaaa      4560
     agaatgtctc atgtctgaac ctgttctcgc taatcccgat tggtcgaaag aatttaaaat      4620
     tcaaactgat gcaagtgatc ttgccattgc aggtatttta acgcaagagg ttgaggggaa      4680
     ggaacatatt attgcctatt tttccagaaa gttgaggtcg tgtgagaaaa agtatgctgc      4740
     gacagaaaag gaaggattag ctgcacttga atcaattgat cattttagaa catatgttga      4800
     gggttcacat tttgaattaa ttacagactg ttcagcggta acgtacattc gagattctaa      4860
     gtggaggcca gggtcacggt tgtctcgctg gtcagtgcaa ctgcaagcca tgcgatgacc      4920
     attaagcata ggaaagggaa agagaatatt gtctgtgata ctttgagccg agcagtatgt      4980
     gctatcttca ctgatcacgt cagctggttc acaaattgaa acagaaaagt aactaacaac      5040
     ccccgaaact acccaatttc aaaattgagg atggagattt acacaaattc atcgcagcaa      5100
     gatcagactt tgaaggtagc cgggttgagt ggaagttagt tgttccacca gacaaagtca      5160
     cacagttagt cgtagaacaa catgaacaac taatgcacct aggaactgat aaaacgttag      5220
     aaagaatcaa attaaaatat tactggccaa aaatgaaatc agatgtgaaa cgaattttgt      5280
     ctaaatgtgc taaatgtaaa caagcaaaat atccaactgt tgcaactgta ccgccgatgg      5340
     gggagcataa aaatgctact cgtccttttc aaatgatcgc gttagattac ataagtggtt      5400
     ttgttcgtag taaacatggt aacatggatt tgttagtttg tttagatgtt tttacaaagt      5460
     ttgtcagatt atttcctgtg agaaagataa gtgtggaggg tttaactgaa attatagaaa      5520
     aagagtggtt tttaaaatac ggttctccgc aagttgtgat atcggataat gctgtgacgt      5580
     ttctaggcaa caaatttcaa gatttattac aaaaatatca tgttcatcat tttaaaaata      5640
     gtcgaagaca ttgtcaaaac aaccctgtag aacgcgtcaa cagagttata ttagcttgta      5700
     ttagaacgta ctgccaggaa gatcaccgac tgtgggatag tcgcttatca gaaatagaat      5760
     ttgcaattaa caatacaaaa cattattcaa ccggatttac acctttcttc ttagcgcatg      5820
     ggtttgagtc ggttctagat gggtgagatc atcatcaagg tggtcaaact tctgacccat      5880
     cacctgaccg atttgtccag cagagaaggg cagtgcttgg tccgttgtat gagaaagtaa      5940
     ttgaaaataa cagaaaacaa tttaataaat acaaaaagag ttacgatagc aaacataaaa      6000
     cagtgccgca ggaatttaat gttggtcaaa aagtgtataa gaagaacttc aaaatttcaa      6060
     gtgccccaga taattatgca gctaaattgg gcccagttta tgttccatgt aaagtaattg      6120
     ggagaaaagg cgcttcatct tatgagctag ccgatgaaga aggaagaaat attggtattt      6180
     ttgctgctca ggatttaata cccgcataga ttcgtactaa ctgattaggt ttcaatttta      6240
     gtgtgttgtg attatttatt taagtgaaat tagtatgata tagtatgttt gatagtatac      6300
     atgagggttg gccacccaat taatgagtga gattgtttga tagtgagagt gaatgaataa      6360
     aaatgattga agggatttag tgttgatttt aaagtgtgtg aaagtttaat ttattatttt      6420
     aaagtgttgc atgaacgact ttgcatgaat gggatgaatt caattttacc taggaatttt      6480
     tgaaagagtg tgtgtaccaa gaatgtattt atcgaaacct aattgaatgt actgaatcca      6540
     gaatccaatt tatgatcaat gaacaaatgg acttacaaga agaaaagaac tgtatcataa      6600
     ttagacactg ggattgtttt aactgtgagt ttattaaatt ggattccgct tgtctgttgt      6660
     gggagagtgg gttacgagga gtgtctagcg accacagcaa tactggtctt agatatcttc      6720
     ctttggttga tactaatccc atatttctgt ctggtgtggg ggtat                      6765
//
ID   Gypsy-13_CQ-LTR repbase;    DNA;    INV; 1491 BP.
XX
AC   AAWU01032992;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_CQ_;
KW   Gypsy-13_CQ-I; Gypsy-13_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1491
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 406-406 (2011).
XX
DR   Genome; AAWU01032992; Positions    1502      12.
XX
SQ   Sequence 1491 BP; 373 A; 359 C; 362 G; 397 T; 0 other;
     tgtaacctgc ctgcggcagt ttaccatcgc aacagtagaa gtctgcgaat aataagaaga        60
     gtgccctaag ccatcccaat cagggcaaaa tttgatcttt tgtcttctag aatttttata       120
     aaaccactac acttacaaca caaacaagaa gccaagaacc atcatcatca tcgattacgg       180
     cttcccagca gccgatcggt gcggattacg cgctgactct cgcgagtgcg tgatctccca       240
     gctaaccgta cacacataag gcacgtatgc actagatatt gggcaatttc aaaaccgaag       300
     gccgatcgtt gaatgattac cctagcacaa aacacaacat gcacacccac cgattatgtt       360
     tatgctcatc atcacatcaa cataccggac cgacatcaac catgccagca tcaaactaat       420
     ttcccgttgg ggaaatcaag tcgagcagcc accctggcga cgccccggta ctcactctcc       480
     aatctcttat cggccgacgc caacgagagc cgtgagtgat aaagcgaggc gcgatcggtc       540
     aggcaatata gccgatcgtc gcccgcggat cgtcatcagt cactggttta tcgtaaagga       600
     gaccgcgtcg atcgtcaacc cgatatattt tccgccagac gatcgacctg aagaagaagt       660
     ttagttcaag gaatttctgt ggtgaaaacc gtctcaccag tgtaattttt tgcggattgt       720
     gtgatgtgag cctaatttta atcgtaatct tgattgtttc gcctaggagg aagaacaagg       780
     cgtggaataa taaccgcact ggagtgcgag gtgccgcgac accgtaaatt ggtcgtggtg       840
     gagaggtaga gtggcgaccc tccctcgtgt gcttaattgg tgttaatttg agtctttttt       900
     gtactttttg tgtgctagtg aggtggcgtc tacgttcagc atggatagca tggccatgct       960
     ggagtagtta ggagtacttg agatcggtaa ggagaagatc taaccgccat tctaaaataa      1020
     gtcccaaaaa atgtgcttcg tccctgaaat gtgtgctaat ttctattgtc tgccattgtg      1080
     caggccttca tttcctgttt cgcaagctaa attccatcat ggctggagcc gtggtgtgga      1140
     gcggtgcgct gctgtgcatt cctgccgact ggacggcggg gcaaatgcac cggatggccg      1200
     gcgttcttgc cggtgaccaa gctgggttct gcccgggcag caacgttgtt ccggatcgtc      1260
     gagggataca cgggggtcac acacacacac acaggtttac acccgcaact ctagttttaa      1320
     ggacgccaac taggtttagt tcgccaatat agatgtaagt acgctaaaat cccctctttt      1380
     atttctgtgt agcttgaatt tatccttgtc ttggagggct ggttgattat ctgggattct      1440
     gttgaattcg acccattttt attgtttgct gtgttctatt gcatctgtgc a               1491
//
ID   Gypsy-13_DAn-I repbase;    DNA;    INV; 6026 BP.
XX
AC   AAPP01018922;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DAn_;
KW   Gypsy-13_DAn-LTR; Gypsy-13_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6026
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018922; Positions    6814     789.
XX
CC   Positions [4590-5069] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           898..2256
FT                 /product="Gypsy-13_DAn-I_1p"
FT                 /translation="MSNPFRRYRSVRQFSSDSESESERPARSSTPKNARAL
FT                 RHAKMAFSMEQMTATIQAAVQHAVQEANIESQRRENELRLAIQRLTEQVNA
FT                 VQVTPAQAEAPVIKVYEPIQIRDNVKCDEPLDAVKCLPEFTGTQETYVSWR
FT                 QAAVAAYYIFRNYVNSSRHYQAVIIIRSKIRGPADAVLSSFGTVLNFDAII
FT                 NRLDFTYSDKRQIHVIEQEMGTLRQGNMTLLQYYDVEKKLTLLTNEATMSY
FT                 EAPAAKVLCDKFRDDALRVFISGLKRSLTDVLFSAKPKDMPSALALAQEIE
FT                 ANHERYSFAASFARSQEDKDKKHYPKTQDHRQAPPPANAQTNTGKNPYYKK
FT                 EQHKAQVHSAPHSGSTPEPMDIDPSLSRMLKPSLAPAYQNRKPVESDRSGP
FT                 HKRQRVNHVAQATSESEGKYSATASDATQEIDDDAIREYDSDVINFLGESP
FT                 CYPSSDEE"
FT   CDS           2967..5093
FT                 /product="Gypsy-13_DAn-I_2p"
FT                 /translation="MPIISMILGNLGKANYFTTLDLKSGYHQITLAERDRE
FT                 KTSFSVNGGKYEFCRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVI
FT                 VFSEDENAHIRHVDWVLKSLHDANMRVSAQKSVFFKESVNFLGFIVTSEGT
FT                 RTDPEKVRAIKEFPEPKSVFEVRSFMGLAGYYRCFIKDFASIAKPISSILK
FT                 GEHGNVSRYRSRNIQVQFTEPQRQAFEKLRNILASEDVILRYPDYKLAFDL
FT                 TTDASAYGIGAVLSQKGRPISMISRTLKDREVNYATNERELLAIVWALEKL
FT                 RHYLYGVKDINVYTDHQPLTYAVSDSNPNTKIKRWKERIDECGAKVHYMPG
FT                 KDNLVADALSRQQLNVVEEEEAFSSAATIHSELSLTHTIPSTDKPLNCFQN
FT                 QITLEEARFSSKRSFVLFGNKRRHNIDFTCEESLLEELADVIVPKGVNAIH
FT                 CDLHTLAMVQDKLVRQFPATKFWHCKNRVTDIFAMGERREILTVEHNRAHR
FT                 SAQENVKQVLSEYYFPKMTKMANEIVDSCRTCAKAKYDRHPKKQELGETPI
FT                 PSHVGEMLHIDIFSTDKKYFLTCIDKFSKFAVVQPVPSRSIEDLKPALLQL
FT                 MNIFPKAKVIYCDNEPSLNSHTIVAMLENHFSVSISNAPPLHSVSNGQVER
FT                 FHSTLVELARCLKIDKGISDTVELILLATTKYNKSIHSVIDKRPADVVQTQ
FT                 SNGPHYEIR"
XX
SQ   Sequence 6026 BP; 1833 A; 1473 C; 1270 G; 1450 T; 0 other;
     tcactgaaga caccctctac agcggagaat aaataaccat cacctcctta atttaattaa        60
     ttggcgccca tcgtgaaaac atgtaagtgg acattttcat tcacaaccct ttcaacaagt       120
     ctgcattggt agtaatagtg aaaatgtgtt acactcataa ctaaaaactg cactccatta       180
     accttttttt taaaaaataa aataaaataa ataaataaat tcctaaataa aattggctga       240
     cggtttagcg ttgcattttt gtacaaattt cttataacaa tacaattttt ttacaaattt       300
     attatatgaa ccattttctt ttgggatata tatcgcccaa tatttgtttg catttattat       360
     ttttctgtat aattaaatga ataaatgttt ttatacaaca acaaaggttg aagaatagaa       420
     aattcttaac caagataaaa aaaagtcacc agctccaaat ttaattttca ttcaaaataa       480
     ttcatataat tgtgtgcatt taattcagct tttatatgtc tcttttgtta cacaaaaatt       540
     cttggtatta gctgcacagt cttggttatt tattttccct ttctgttttg tttccccact       600
     ccattcttgg gaatacgata cggccgcgca tgcagtcagt ggcactttgt tatttttatt       660
     tatttttttt tcttctctta tctttgtgtc atagcggagg ctccgacccc gcatgcccct       720
     caccttgccc ctacttggca aagcaatagt gcagctcaac gagcccgcac acatatgtaa       780
     ctaaaacaac ggctcagccc tcgcgagccc cctcacccta ccaatcgcct ctgtgggcat       840
     gcaattcgag catgaacatt tttttttctc gggttctata catagctgca gctccacatg       900
     agcaatccct tccgacgata tagaagcgta agacaattct ccagtgattc tgagtcagag       960
     tccgaaagac cggccagatc ttccacccca aagaacgcta gagcactccg acacgcaaaa      1020
     atggctttca gcatggaaca aatgacagcc accatacagg cagccgttca acatgccgtc      1080
     caagaagcca atattgagag ccagcgtagg gaaaatgaac ttcgcctggc tatacagcgg      1140
     ctgaccgaac aagtcaacgc agtacaagtc actcccgcgc aagcggaagc ccccgtaatc      1200
     aaagtatatg aacccataca aattagagac aacgtaaaat gtgacgagcc cctagatgcc      1260
     gtcaagtgcc tgcccgaatt tacgggaacg caggaaacat acgtttcctg gcggcaagcg      1320
     gcggtagccg catattatat ttttaggaac tatgtaaata gctctcggca ttaccaggca      1380
     gttataatta ttaggagtaa aataagaggc cctgccgatg ccgtgctatc ctcgtttggc      1440
     actgtgctga atttcgacgc gattataaat cgactcgact tcacgtacag tgataaacgc      1500
     cagattcatg ttatcgagca agaaatgggt actctcaggc agggaaatat gaccctactg      1560
     cagtactacg acgtcgagaa aaaactgacc ttactcacca acgaagccac catgtcgtac      1620
     gaagccccgg cggcaaaggt tttatgcgac aaattccggg acgacgcact ccgagtattt      1680
     atctcgggac ttaagcgtag tcttacggat gtcctctttt cggcaaagcc aaaagatatg      1740
     ccttcagccc tcgctttggc acaggaaata gaagctaacc acgagaggta ctccttcgcg      1800
     gcttcgtttg ccagaagcca ggaggacaag gataaaaaac actatccaaa aacacaagac      1860
     caccgtcagg ctcctccgcc ggcgaatgcc cagacaaata ctggcaaaaa tccttactac      1920
     aaaaaggagc agcacaaagc acaagtgcac tctgccccac acagcggaag cacacctgaa      1980
     cccatggaca ttgacccatc gctttccagg atgctcaagc cgtccctagc cccggcatac      2040
     caaaacagga agccggtaga gtccgatcga tcgggcccac acaaaaggca gagggtcaac      2100
     catgtcgcgc aggccacaag tgaatccgag gggaaatatt ccgctacagc ttcagacgcg      2160
     acccaagaga ttgacgacga cgccattagg gaatacgact ctgacgtcat taatttttta      2220
     ggggaaagtc cctgctaccc gtcatcagac gaagagtagc ggggctagaa atgaagcttc      2280
     taatagacac gggcgcgtca aaaaatttca tccgtccata cgagggattg aaaggcgttc      2340
     gcccagtgga ttcaccattt tcgatacatt ctatccatgg cgttaccacg atcacaaaga      2400
     aatgcttcat atccctattc aacttgaagg ccagcttgat tttaccagat ttgtcctcct      2460
     ttgttgccat catcggcctt gacctgttaa aacaggcagg ggcatcgctt tgcctagcct      2520
     ccggacacct caaatggggt tccgaaatag aaaagctaga attccaagca tgccccaacg      2580
     taaattttac tgaagtggac tgctccagtg caccaccttc agtcagaaaa gcattttcaa      2640
     aaatgctaag cgacaggaaa aatgccttcg ctaacccaaa tgaggcgtta ccttacaaca      2700
     cttcagtggt tgcgaccatt agaacagttg atgaggagcc catttatgcc agaccctacc      2760
     catacccgat gggggcagcc gatttcgtaa atggcgaaat tcaagacctc ctaaaaaacg      2820
     gcataatcca gaagtcgaga tccccctaca ataacccaat atgggtagta gacaaaaagg      2880
     gcaccgacga gtctggcagc cgtaaaatgc ggctggtatt agactttcga aagttaaacg      2940
     agaggacaat accggatcgc taacccatgc caattatctc catgatacta ggcaatttgg      3000
     gcaaggctaa ttactttaca acgctcgatt tgaagtctgg ctaccaccag attacactgg      3060
     cggaacgtga ccgtgaaaaa acttcctttt ccgtaaacgg gggaaaatac gagttctgcc      3120
     gactgccatt cgggttgagg aatgctgcca gcatcttcca aagaaccatc gacgacatac      3180
     tgcgagagca gattggcaaa ttttgctatg tctatgtcga tgatgttatc gtcttctcag      3240
     aggacgaaaa cgcccacata cggcacgtag actgggtact aaagagcctg cacgacgcca      3300
     acatgagagt gtcggcgcag aaatcggtct tcttcaaaga aagcgttaat tttttggggt      3360
     ttatagtcac cagtgaaggg actagaacag acccagaaaa ggtccgggcc atcaaggaat      3420
     tcccggagcc taaaagcgta tttgaagtaa ggtcattcat gggcttggct ggctactata      3480
     ggtgctttat taaagatttt gcatcaatag ctaagcccat ttcgagtatc ctaaaagggg      3540
     aacatggaaa tgtcagcaga tacagatcca gaaacatcca ggtacagttt accgagccac      3600
     aacggcaggc cttcgaaaag cttcggaaca tcctggcctc tgaggacgtc atcctcagat      3660
     accccgatta taaattggca tttgatctaa cgacagatgc ctcagcgtac ggcattggcg      3720
     ctgtgctttc ccaaaaggga cgacccattt ctatgatctc tagaacctta aaggacagag      3780
     aggttaatta cgctaccaac gaaagggagc tgttagccat agtttgggct ctagaaaagc      3840
     ttcgtcacta cctatatggg gtcaaagaca taaatgtcta cactgaccac caaccactaa      3900
     cctacgcggt ttcggattct aatccaaaca cgaaaattaa aagatggaaa gaacgcatcg      3960
     acgagtgtgg tgccaaggtt cattacatgc ctggcaaaga caacctcgtc gcagatgccc      4020
     tctcgagaca acaactcaac gttgtagaag aggaagaggc attttcaagc gcggccacaa      4080
     tccacagtga gctgtcgcta actcacacca tcccatccac ggataagcct ctcaattgct      4140
     tccagaacca gataactctg gaagaggctc gcttttcgtc taaacgcagc tttgttctct      4200
     ttggaaacaa gagacggcat aacattgact tcacttgcga agagtcattg ctggaggagc      4260
     tcgcggacgt gatagttcct aaaggcgtaa acgccatcca ttgcgacttg cacacgctag      4320
     caatggtaca ggacaaattg gttcggcaat tccctgccac caaattttgg cactgcaaaa      4380
     atcgagtgac ggatattttt gcaatgggcg agagacggga gattctcact gtcgagcaca      4440
     acagagctca caggtctgcc caagaaaacg tgaagcaggt actctccgag tactacttcc      4500
     caaaaatgac caaaatggcg aacgaaatag tcgattcctg caggacttgc gccaaggcta      4560
     aatacgacag acatccaaag aaacaggagc ttggcgaaac accgatccca tctcatgtag      4620
     gagaaatgct acacatagac atcttctcca cggataaaaa gtatttcctt acgtgcatcg      4680
     acaaattctc gaaatttgct gtcgtccaac cggtcccctc tagatccata gaggacctca      4740
     aaccagcgct actacagctg atgaacattt tccctaaggc aaaggtcata tattgcgaca      4800
     acgaaccatc gttgaactcg cacaccatcg tggccatgct ggaaaaccat ttcagcgtta      4860
     gcatttcaaa tgctccgccc ctccacagtg tctcaaacgg acaggtggaa cgcttccaca      4920
     gcactctggt agagcttgct agatgcctta aaatcgacaa aggcattagc gataccgtag      4980
     agctgatcct actggctaca accaaatata acaaatctat ccattcggtc atcgacaaga      5040
     ggccggctga cgtggttcag actcaatcaa atgggccaca ttacgaaata agataagatt      5100
     aaaatagccc aggacaagct ccgaaacagg gaaaacgctt cccgacaaaa tagagtgttc      5160
     gaggttggcg aaaaagtctt agtgaagtct aacaaacgcc tgggcaacaa actctcgcct      5220
     ttgtgtgaag aaaagaccgt tgaagcggac atggggacca cagtcctcat taaggggagg      5280
     gtggtccaca aagacaacct taggtaggcc gagcgtgact attctatccc tcgcctgata      5340
     atttttaaat ttcttatcat accttttttg tagccacttg gcataagttt tgcttttatt      5400
     attttaatca cgctttggtg gtgggcttcc caaatttcaa caaacttaca gcacttccaa      5460
     attacaggtt cacaactatg gccctgattt tccttttgac cacaacatcg gcacgcgtca      5520
     cggactattc taaaactaaa tacattccca tcgttgatgg ccaaattcta gtttgggagg      5580
     aatttgcgtt tgtgaaacat tctgcaaatc tctcggaata taggcgcgtc atagaagaaa      5640
     ctagcgggat gtccagcatg ttccctcagt ctcatatgca gaaactcttg attgttgatg      5700
     tcgcccatct gcgcgacctg ctcgactctt tgagcatcca tcatagggta gcaagaagct      5760
     tagacttcct agggaccgcg ttgaaggtag tggcgggaac gccggacgcg gaagatttcg      5820
     aaaaaattaa atttaaagaa ttcgaattaa taaatgcaaa caataggcag gtcaatatca      5880
     acaacaaaat acaaatgcaa attaataaaa tttccgctac cgtcaaccaa cttctggggt      5940
     cggctaaaaa ggcccaacta aaagagatga tcgcccaaat agggtcggcc gagggcggcc      6000
     tcattcttga agggggagta gttaac                                           6026
//
ID   Gypsy-13_DAn-LTR repbase;    DNA;    INV; 402 BP.
XX
AC   AAPP01018922;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DAn_;
KW   Gypsy-13_DAn-LTR; Gypsy-13_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-402
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018922; Positions     788     387.
XX
SQ   Sequence 402 BP; 114 A; 104 C; 80 G; 104 T; 0 other;
     tgaagttaac cgcgcgacgg caatgtccgg ttgcttaaga actcgctctg gccaaactgc        60
     tgacacagcg tctggccgga tgctcatgca tagccggcga acactgcata tttgcgtggc       120
     cgctatgaaa ttttttttgt tagctttaag tttcagtttg tacttgagtc tctcagaata       180
     aagaactctt tcacttaact ccggcacaag ccgtaatatt caattcattt gctcttgctt       240
     ggttactcag cctcaaggca gtaataacgg agttagtaac tcccaacgta aactctcatc       300
     agaaggaaga accctcggca accgccagga ataccaaacc attctacact ggagatatcc       360
     tcatcactga agacaccctc tacagcggag aataaataac ca                          402
//
ID   Gypsy-13_DAzt-I repbase;    DNA;    INV; 4216 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4216
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 794-794 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..4199
FT                 /product="Gypsy-13_DAzt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSQKPAPEKERRKKSGTPHVLEAASRGSKTEETKRKV
FT                 RETTVVSSRLPVRVLRSRIITENRSVPPAANMQQNEDRSESVAGGNNRKND
FT                 KNMEAMSSTRLEENTQTLQQLVQLLTMKISADEMDKKNDAKLVVENFSKII
FT                 PEFSGENMSVQQWFNNFELNAEAYGLNDKQKYVQARAKMTCTAALFLESTA
FT                 VYEYGQLRHQLIQEFESDRLCSAEIHNQLSVRVKTNNESFHEYILQMKRIA
FT                 ARGTIDTESVIRYIVDGLKLKTDYKYTLYGCSSYKQLKEKYEIYERSLPAE
FT                 EGVTLKRKDSQSFVKKPSLTNYTRKQHCYNCGSLEHLRKDCRAALKCFRCN
FT                 LTGHMSKDCPSAAAVNVAYEEKRLKSLKIKNVQVKGLIDTGADVSLVKMSV
FT                 FGQMSGARLQPSSSTLRGLGNIITRAAGQFSTEVEIDGMCLAHKFLVVADH
FT                 AVGCQVLLGHDFISKFTMTSTPGGYQFSPLSGEETVDSKQISIYNVVEANT
FT                 DIDVPSQYKDTVHSMIQDFTEKKQTAVCPIMLKIVPDENIAPFRHAPSRVA
FT                 ISEADVVKQQVDEWANAGIIRRSSSNFASRTVIVKKKDGSSRVCVDYRQLN
FT                 KMVLKDCFPVPIVEDVLEKLETAKMFIIMDLENGFFHVPVEESSKKYTAFI
FT                 TKEGLFEFNRAPFGFCNSPAVFIRFISYVFQNLINENILDLYMDDIIIHAE
FT                 TADECLGKLKKVFDAAAEYGLKMKWKKCRFLQSAITFLGHQVGKGEIKPGL
FT                 EKTKAIRKFPMPQNVKAVQSFLGLTGFFRKFIKNYSIIAKPLTNLLRKDVK
FT                 FKMGLEEQQAVAILKEALVNEPVLRLYRRNAKTEIHTDASKDGFAAALMQW
FT                 HEEQLHPILFWSKKTSESEARQHSYILEAKAIFLACKKFRQYILGTNFKLV
FT                 TDCAAFKQTLSKKDVPREVAQWVLYLQDYDFEVEHRPGERLKHVDCLSRYP
FT                 IDVMMVSSEITARIKKAQQEDAMIKAVTEVLKSKPYDNFKLKAGLVYKVVE
FT                 GTDLLAIPKSLEREIISEAHNAGHFAAQKTMHAVQQSYWIPHLEGKVMQII
FT                 RNCMKCIIYNKKLGKKEGFLHQIDKGSEPLHTLHVDHLGPMDATSKQYKYI
FT                 FAMVDSFSKFVWMYPTKTTGADEVLKKLKEWSDIFGNPARIVSDRGAAFTS
FT                 SSFEEFVKEENIEHVWSTTGVPRGNGQIERVNRSILSIISKLSSEEPGRWY
FT                 KFVPRVQRAINSTVHGSTKRCPFELLIGVKMRCGPDSDILQLIEKEMVDNF
FT                 DDERQKMRQEARENIQQAQNRYKEQFDKKRKCEFGYKVGDLVAIRRTQFVA
FT                 GRKMASEFLGPYEITNVKRGGRYNVRKAADVEGPNNTTTSNDNMKLWSYSV
FT                 ENEDTWSSGTDD"
XX
SQ   Sequence 4216 BP; 1382 A; 818 C; 1073 G; 943 T; 0 other;
     tttgggggct caaccggtcg cgtattgcca atgtaaagtg cgaaaaaaaa aaaaaaaaat        60
     tttttgtata ctgcatgtct cagaagccgg cgccagaaaa agagagacgg aagaaaagtg       120
     gtacgccgca tgtcttagaa gccgccagca gaggaagcaa gacagaagaa accaaaagga       180
     aggtccgaga aacaacggtt gtttcaagca ggctgcccgt aagagtattg cgcagcagaa       240
     tcataacgga aaatagaagc gtaccaccag ccgcgaatat gcagcaaaac gaagaccgaa       300
     gtgaatcagt ggcaggcggg aacaaccgta aaaacgacaa aaacatggaa gcgatgagtt       360
     caacaagact ggaggaaaat acacagacgc tccaacaact ggtgcaactt ctaacgatga       420
     aaattagcgc tgatgaaatg gataagaaaa atgatgcaaa gctggtagtg gaaaattttt       480
     ccaaaattat tccagagttc agtggagaaa atatgtcggt acagcagtgg tttaataatt       540
     tcgagctaaa cgctgaagca tatggactaa acgacaaaca aaaatatgtg caagcacgag       600
     cgaaaatgac atgtacagcc gctctttttc tcgaatccac agcagtgtat gagtacggcc       660
     agttacgtca tcaacttata caagagttcg agagtgatcg tttatgcagt gccgaaattc       720
     acaatcagtt gtcggtgcga gtgaaaacta ataatgaaag ttttcatgaa tatatattgc       780
     aaatgaaacg aattgctgcg cgtggtacaa tagatacaga gtcggtgatt cgatacattg       840
     tcgacggatt gaaattaaaa acggattata agtacacttt gtatggatgc agttcgtata       900
     aacagctaaa agagaaatac gaaatctacg aaagatcgct gccagcagag gaaggtgtga       960
     cgctgaaaag gaaagattca cagtcgtttg taaagaagcc cagtctaacc aactatacga      1020
     ggaagcagca ttgctataat tgtggatcct tggagcatct acgtaaggat tgccgagctg      1080
     cattaaagtg tttccgctgc aatctgactg gacacatgtc gaaagattgc ccgagtgctg      1140
     ctgccgtaaa cgtggcatac gaggaaaaac gcctaaagtc actcaaaatc aagaatgtgc      1200
     aagtcaaagg gctcatagac acaggtgcag atgtttcact agtaaagatg tctgtgtttg      1260
     ggcaaatgag tggcgcccgt ctgcaaccaa gctcgtcaac tttgagagga cttggaaaca      1320
     tcatcacacg cgccgccggg cagttctcga cagaagtgga gatcgacgga atgtgcctgg      1380
     cacataagtt ccttgtggtg gccgatcatg ccgtcggatg ccaagtgctg ctgggacacg      1440
     actttatatc aaagttcacg atgacgtcaa cgccgggagg atatcagttt tctcccctgt      1500
     cgggggagga aactgtggac agcaaacaga taagtattta caacgtggtc gaagcaaata      1560
     ctgatataga cgttccctcg cagtacaaag ataccgtcca ttcgatgatt caggacttta      1620
     ccgaaaagaa gcagactgcc gtatgcccga tcatgctgaa gatcgtgccg gatgagaaca      1680
     tagcgccgtt tcgacatgcg cccagtcgag tggccattag cgaggccgac gtcgtcaagc      1740
     agcaggtgga tgaatgggcc aatgctggga taatacgacg ctcatcatca aatttcgcca      1800
     gccgtacagt aatcgtcaag aaaaaggatg gaagcagccg ggtctgcgtg gactatcgtc      1860
     agctgaataa gatggtcttg aaagattgct tccccgttcc gatcgttgag gatgtgctgg      1920
     agaaactgga aactgcgaaa atgtttatca tcatggacct agaaaatgga ttctttcacg      1980
     ttcctgtgga agaaagcagc aagaagtata cggcgttcat aacgaaggaa ggcctctttg      2040
     aattcaatcg cgcgcccttt ggtttttgca attcgcctgc agttttcatc cgctttataa      2100
     gttatgtatt tcaaaacctc ataaatgaaa acattcttga cctgtacatg gacgacatta      2160
     ttatacacgc cgaaaccgcc gacgaatgcc tgggaaagct aaagaaggtt ttcgacgcag      2220
     cagctgaata cggactgaag atgaagtgga agaagtgccg attcctgcag tctgctatta      2280
     catttttggg tcatcaagtt ggaaaaggag aaatcaagcc tggattagag aagaccaaag      2340
     ccatcagaaa gttcccgatg ccgcaaaacg taaaggccgt gcagtccttt ttaggattaa      2400
     ctggtttttt ccgtaaattt ataaaaaact attcgataat cgcaaaacca ttgacgaatc      2460
     tgctgagaaa agacgttaaa tttaaaatgg gtctggagga gcagcaggcg gtagccatat      2520
     taaaggaggc attggtaaat gaaccggtgt tgaggctcta tcgaaggaat gcaaaaacag      2580
     agatccacac tgatgcttcg aaggacgggt tcgcagcagc gctgatgcag tggcacgaag      2640
     aacaattgca tccgatctta ttctggagta agaaaacctc ggagtccgaa gcacgacagc      2700
     atagctatat actagaagcc aaagctattt ttctcgcgtg caaaaaattc cgccagtaca      2760
     tattgggaac caactttaag ctcgtgactg attgcgccgc ttttaagcag acgttaagca      2820
     agaaggacgt tccgcgggag gtagcccaat gggttctgta tctgcaggac tatgattttg      2880
     aggtggagca cagaccaggg gaacggctga agcatgtgga ttgccttagt cgatacccaa      2940
     ttgatgtcat gatggtatcg tcggaaatca cagcaaggat taagaaagcc cagcaggagg      3000
     atgcgatgat caaggccgta accgaagttc tgaaaagtaa accgtatgac aactttaaat      3060
     tgaaggctgg tcttgtttac aaggttgtgg aaggcacaga tttgttggca ataccgaaat      3120
     cactagagag agaaataata agcgaggctc acaacgcagg acactttgcc gcacagaaaa      3180
     cgatgcatgc cgtacagcag agttattgga ttccacatct ggaaggaaaa gtaatgcaaa      3240
     tcataagaaa ctgtatgaaa tgtataatct acaacaagaa gctgggaaaa aaagaaggat      3300
     ttttgcacca aatcgataaa ggatcggagc cgcttcatac tctacatgtg gatcatctgg      3360
     gaccgatgga tgctacttca aagcagtaca agtacatctt cgcgatggtg gatagcttta      3420
     gtaagttcgt atggatgtat cccactaaaa caacaggcgc agacgaagtt ctcaagaagt      3480
     taaaggagtg gtctgatatc tttggaaatc cggctcgtat agtaagcgat cgtggagcag      3540
     catttacgtc ttctagcttt gaggagtttg tgaaggaaga gaacatcgaa cacgtatgga      3600
     gtaccacagg ggtgccaagg ggcaacggac aaattgaacg cgtgaaccga tcgattctga      3660
     gcattatttc caaactgtcg tcggaggaac ctggaagatg gtataagttc gtacctcgag      3720
     ttcagagggc tattaatagc actgttcatg ggtcaacaaa gcgttgtcca tttgagctat      3780
     tgatcggagt aaaaatgcgt tgtggaccag atagcgatat acttcagctg atagaaaagg      3840
     agatggttga taattttgat gacgaaagac aaaagatgcg acaagaagca agagaaaata      3900
     ttcagcaggc gcagaacaga tataaggaac aattcgacaa aaagcggaaa tgcgagttcg      3960
     gatacaaagt tggtgatctt gtggctatac gtagaacaca gtttgtagct ggaaggaaga      4020
     tggccagcga attcttagga ccatacgaaa taacaaacgt gaaacgaggc ggacgctata      4080
     atgttcgaaa agcagcagac gtcgaaggac caaacaatac gaccacgagc aacgataaca      4140
     tgaaactatg gagttattct gtagaaaacg aggacacatg gtcatcaggg actgatgact      4200
     gatcaggatg accgag                                                      4216
//
ID   Gypsy-13_DAzt-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-376
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 817-817 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 376 BP; 160 A; 76 C; 88 G; 52 T; 0 other;
     tgtaaaaggt agtaggaagg ccggccaact gaaggagcgt cggttaacag cagtaacagt        60
     agcagcagag taacagcaga taaacagcag taccagcaga acaacggcag aaagagataa       120
     gcagatcaac agaagtaaca gcagtaccag cagaacaacg ggagaacgag agaagcagca       180
     acggcagaag gagaacagca gtaaggagaa aagtacgaca gaagacagac agagttcagc       240
     agcagcagtc gacatcagca gaaaacagca gaaaatcagc cgagatcaag ccgtgaaacc       300
     caacccgaac aattcttact ttatatctta cgcgattaaa taataccaat aaactatatt       360
     taaataatat cttaca                                                       376
//
ID   Gypsy-13_DBi-I repbase;    DNA;    INV; 4221 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DBi_;
KW   Gypsy-13_DBi-LTR; Gypsy-13_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4017
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 843-843 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1811-2353] - Reverse transcriptase
CC   Positions [3329-3805] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1545
FT                 /product="Gypsy-13_DBi-I_1p"
FT                 /translation="MACLNDLISNNLKTASKGSIWALHKFVFEKEGDRNNR
FT                 KRLREFAGFQYDENDAVYKAKSVYVQAKLTERDLISICLVLNISHDVENMQ
FT                 LHIFRNLRFGQLLAGNEVEDPEESDEEREDEEEYQSDDEIESIIANSAGTN
FT                 PTSERERKKNSQPVPIQCNEMPRFALSFRDIEESIKQFEGTDEIPVEVWIS
FT                 DFEDQAVLMGWNEMQKLIFAKKSLKGVAKLFVLSEKGINSWSVLKESLLSE
FT                 FRSRVSSKQIHMQLGESKRRANESVQEYFYRMKDIASRGNVEEDALIQYVI
FT                 DGIDKLSINKSMLYGARNMTEFKYKLKDYQTISAKSHFVESSAKDKKAQAV
FT                 HSDYKGGKKEIVRYNCGEKGHLSSGCNNKEKGRKCFKCNKFGHISKNCPQR
FT                 VETVEECKPNARVLSEHNNMTSKVVSIKTQNCIALFDTGSKFNILREDLYD
FT                 GQMYGHSNDHWRGIVFASRDIVRSKWFACAKYK"
FT   CDS           1457..4018
FT                 /product="Gypsy-13_DBi-I_2p"
FT                 /translation="MDTRMIIGEELCLQAEISFGPSGLRVRNINNLCQENI
FT                 PSNLLKIDTVINNDELDINESASACAKQEVRELITNYKPLKSKSTNIEMKI
FT                 LLNDESPIFSRPRRFAFAETNVIDEQIEQWLDNGIIEESDSEFTSPVVLAK
FT                 KNDGSQRLCIDFRRINKVIVKDHFPLPLIDDQLDRLQEALIFSAIDLRNGF
FT                 FHVPVAESSRKYTSFVTQSGQYQFLKVPFGLSNSPGVFQRHINAIFRGLSR
FT                 RGIALPYVDDIIIPAKDEEEAISNLNEVISTCSEYGLELNIKKCHFLQTRI
FT                 QFLGHIIENKTISPTPQKIDAVSKFKTPQNLKQLESFLGLTGYFRKFIQNY
FT                 ALISKPLTDLTKNKAEFVIGPYEENAIESLKKYLTSTPVLAIYNPKYDTEV
FT                 HTDASIDGFGAVLLQKSADDGQFHPVYFMSRKTTDAQRKYSSYELEVLAIV
FT                 AGPARPAPETLDKQSLCTRVARWVLLLQEYDYKVEHRSGTRMKHVDALSRY
FT                 PIMTIVDDSVALGFKQAQEKDEHLKAICKIIKDSNSPYDDYFLKSGILYKI
FT                 VNDTELLVVPRDMERQIIGKAHDRGHFAVKKTKEMICNEYFIQNLDEKIQK
FT                 FIDCCIPCILSNRKRGKQEGWLHPLHKEDFPLHTYHIDHLGPLESTSKNYK
FT                 HILAVIDSFTKFCWLYPTKSTTASEVITKLRGQSNVFGNPACIISDRGSAF
FT                 TAQDFHQYCDEENIKVVKSTTGLPRVNGQVERLNAIIIPVLSKLSVDDPTK
FT                 WYRHVDRVQQAINSTFSRSINATPFELLIGVKMRNKDDQQLRELINNETLA
FT                 LFQDSRNDLRLKAKSQILKLQSENKRTYNLRRKPARLYNVGDMVAIKRTQF
FT                 G"
XX
SQ   Sequence 4221 BP; 1405 A; 895 C; 921 G; 1000 T; 0 other;
     catttgggag ctcgtccggg aagtatccga taaggttgga agtgatgcgt gaaagttgta        60
     cgacgtgaac gagacacata aaccctttgt gaaacataca ttttttcagt tatggcgtgt       120
     ctaaacgatt taatttcaaa taacttaaaa actgcatcaa aaggaagcat ttgggctctg       180
     cacaaattcg tgtttgaaaa agagggagac cggaataatc gcaaacggct tcgcgaattt       240
     gctggcttcc aatacgacga aaatgacgca gtgtataaag ccaaaagtgt atacgtgcag       300
     gcaaaactaa ctgaaaggga tttaatttca atatgcctag ttttaaacat aagccacgac       360
     gtcgaaaata tgcaattgca tatttttcgc aatcttcgat ttggccaact tctcgctggc       420
     aacgaagtgg aagatccaga ggaatctgat gaagaaaggg aagacgaaga agaataccaa       480
     agcgacgacg aaatcgagag tatcattgca aattccgcag gaacaaatcc aacgagtgaa       540
     agagaacgaa agaagaattc acaaccagtg ccaattcaat gcaacgaaat gccgcgtttc       600
     gctttaagtt ttcgcgatat agaggaatct ataaaacaat tcgagggcac agacgaaatt       660
     ccagtcgagg tctggataag tgattttgag gaccaagctg tacttatggg ttggaacgaa       720
     atgcaaaagc tgatctttgc caaaaagtcg cttaaaggtg tcgcgaaatt gttcgtgttg       780
     agcgagaaag gaataaattc gtggagtgtt ttaaaagagt ctttgttgag cgagttcaga       840
     tcaagagtaa gcagcaaaca aatacacatg caacttggag agagcaagcg acgcgcgaac       900
     gaaagtgtac aggaatattt ttaccgtatg aaagatattg cctcacgggg aaatgttgaa       960
     gaagacgctc ttatccaata cgtgatcgac ggtattgata aactctcaat caacaaatcg      1020
     atgctttatg gagccagaaa catgaccgaa ttcaaataca aattaaagga ctaccaaaca      1080
     atcagtgcaa aatcccattt cgtcgaaagc agtgcgaagg acaagaaagc tcaagcagtg      1140
     cacagtgatt ataaaggtgg caagaaggaa atcgttcgct acaattgtgg cgagaaggga      1200
     catctgtcta gtggatgcaa caacaaagag aaaggcagaa aatgttttaa atgcaacaaa      1260
     ttcggtcaca tctccaaaaa ctgtccccaa cgtgtcgaaa cagtcgaaga atgcaagcca      1320
     aacgcgcgag ttttaagtga gcataacaac atgacgagca aagtggtttc aattaaaaca      1380
     caaaattgta ttgcactgtt cgacacaggc agcaaattta atattttgcg cgaagattta      1440
     tacgacggcc aaatgtatgg acactcgaat gatcattggc gaggaattgt gtttgcaagc      1500
     agagatatcg ttcggtccaa gtggtttgcg tgtgcgaaat ataaataatc tttgccaaga      1560
     gaacatccca tctaacttgc tgaaaattga cacggttatt aacaacgatg aactcgatat      1620
     aaacgaatca gccagtgcgt gtgcgaaaca agaagtgcgt gaactgatta cgaattacaa      1680
     gccgctaaaa tcgaagtcga caaacattga aatgaaaatc ctcttaaacg acgaatctcc      1740
     aattttctcg cgtccgcgca gattcgcttt cgctgaaacg aatgtaatcg acgaacaaat      1800
     tgagcagtgg ttggacaacg gcataatcga ggagtctgat tccgaattta caagcccggt      1860
     agtgcttgcg aagaaaaacg acggttcgca acgactttgc attgatttca ggcgtataaa      1920
     caaggtaatc gtaaaagatc attttccgtt gcccctgatt gacgaccagc tcgaccgctt      1980
     gcaagaagcg ttgatattca gcgcgatcga tttgcggaat ggctttttcc atgtgccagt      2040
     ggctgaatct agcaggaagt acacttcgtt cgtgacgcag agtgggcaat accaattcct      2100
     aaaggtgcct tttggtttgt ccaactcacc tggtgtgttt cagagacaca taaatgcgat      2160
     tttcagaggt ctgtcccgta gaggaatcgc tctaccttat gtagacgaca taattatacc      2220
     agcgaaggac gaagaggagg caatttcgaa tctcaacgaa gttatatcaa cttgcagcga      2280
     atatggtctt gagcttaaca taaaaaagtg tcattttctg cagacccgta tccagttctt      2340
     aggtcacatt atcgagaaca aaaccatttc tccaactcct cagaagatcg acgcagtttc      2400
     gaagtttaag acgccacaga acctaaagca gttagaaagt tttctaggac tcacaggata      2460
     ctttaggaag ttcatccaga attatgctct gatttcgaaa cccttgactg accttaccaa      2520
     aaataaagct gaatttgtta ttggccctta tgaagagaat gctattgaat ccctaaagaa      2580
     atatctgact tccacccctg ttctagcaat ttacaacccg aagtacgaca ccgaggtaca      2640
     caccgacgcc tccatagacg ggtttggcgc cgtgctatta cagaaatcag ctgacgacgg      2700
     ccaatttcac ccagtctact ttatgagtag gaaaaccaca gatgctcagc gtaaatactc      2760
     aagctacgag ttagaggtgc tagcgatcgt cgccggaccg gcccggccgg cgcccgagac      2820
     gctggacaag caaagcctct gcaccagagt ggcacgttgg gtactattgc ttcaagagta      2880
     cgattacaaa gtggaacacc gttcaggtac acgtatgaag cacgttgacg ctctctccag      2940
     gtacccaata atgacaatcg tagacgactc cgtagcactt ggctttaaac aagctcaaga      3000
     aaaggacgaa cacttgaagg cgatctgcaa aattattaaa gactccaact caccctacga      3060
     cgattatttc ctaaagtccg gaatcttata caagatagtt aacgacacag aacttcttgt      3120
     tgtgcccagg gatatggaaa gacagatcat tggcaaagca cacgacagag gacatttcgc      3180
     cgtcaaaaag acgaaggaga tgatttgcaa cgaatatttc atccaaaacc ttgacgaaaa      3240
     aatacagaaa ttcatcgact gctgtattcc atgcatttta agcaaccgca agcgtggcaa      3300
     gcaagagggc tggctacatc cattgcacaa agaagatttt ccattacata cgtaccacat      3360
     cgatcacttg ggtccattag aatctacaag caagaattac aagcacatac tcgccgtcat      3420
     cgattccttt acgaagtttt gctggcttta tcctacaaag tcaacaactg caagcgaagt      3480
     cattacaaaa ctacgaggac aaagtaatgt gtttggcaac ccagcttgta tcatttcgga      3540
     tcgaggttca gcttttacag cccaagattt tcatcaatat tgcgacgagg aaaatataaa      3600
     ggttgtcaag tctacgacag gtctaccacg tgtaaatgga caagtggaga gactgaatgc      3660
     cataattatc ccagttttgt caaaactcag tgtggatgat cctacaaaat ggtacagaca      3720
     cgttgatcga gttcaacaag ccatcaactc tactttctcg agaagcatca acgccacacc      3780
     ttttgagctt ttaatcggag tcaaaatgag gaacaaagat gaccagcagc ttcgtgagct      3840
     aatcaacaac gaaaccttag cgctgtttca ggactctcgt aacgatttaa ggctgaaggc      3900
     aaaatcacaa attttaaagc ttcaatcgga aaacaaaaga acttacaatc tgcgacgcaa      3960
     accagcaagg ctttacaacg tcggcgacat ggtagccata aagcgcactc aatttggtgg      4020
     aggcctcaaa ttaaagccga agtatttggg tccttaccaa atcacgaaag tcaagcacaa      4080
     caacgcctac gatgtccaga aagttggcaa ctcagacggt ccaaaaattt cttcgacttg      4140
     tgccgaatat ctcaagccat ggcccaccca cgaagacaac gacgaaacat ttgaggcgaa      4200
     tgtttaatta gaatggccga a                                                4221
//
ID   Gypsy-13_DBi-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DBi_;
KW   Gypsy-13_DBi-I; Gypsy-13_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-320
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 844-844 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 320 BP; 124 A; 57 C; 65 G; 74 T; 0 other;
     tgtgggagtg atattactga gggagtgata ttactagaat aaccctacct atccctaacc        60
     atccctaaga gaacgacgag cagtagcata cattccagag gaagacgagc caaaaggagt       120
     aaaagacgag aacgacgacg atacgatgat aatgacgaga aaagaagcag tttttgacga       180
     gatctagttg agagaagacg tgcttgtgtg aagagcaaaa cgacgcgacg acgatcttaa       240
     ttctactcca attgtgaaat cattttcatt taaataaaca cttaaattta tatatattct       300
     aaaataataa aaaccccaca                                                   320
//
ID   Gypsy-13_DBp-I repbase;    DNA;    INV; 3661 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3661
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 675-675 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           666..1925
FT                 /product="Gypsy-13_DBp-I_1p"
FT                 /translation="MPFGKPISESQRRQNELRLAIQXLTERVDATQIAPAQ
FT                 AEAPQIKAYKPIEIRDDVKCDEPLDAVNCLPEFTGAQDAYVSWRQAAVAAY
FT                 YIFRNYVNSSRHYQAVIIIRNKIRGPADAVLSSFGTVLNFDAIINRLDFTY
FT                 SDKRQIHVIEQEMGTLRQGNLTLLQYYDEVEKKLTLLTNKATMSYEASAAK
FT                 VLCDKFRDDALRVFISGLKRSLTDVLFSAKPKDMPSALALAQEVESNHERY
FT                 SFAASFAKSQEDKDKNPYYAKQRKAQVHSAPRSANTHEPMDIDPSRSKILN
FT                 PSQAPSYQNREPTVSDRSGLHNKQKVNHVAQSAGGTGEKYTAAASSTAQEI
FT                 DDDVIQDYDSDVINFLREYPCYTSANDKRPADGVQTESNDPQYAIQDTIKH
FT                 AQNKFRDRRNASRQNRVFEVGEKILV"
FT   CDS           2163..3659
FT                 /product="Gypsy-13_DBp-I_2p"
FT                 /note="envelope protein."
FT                 /translation="MVGYPVSIEFTAHPNYRFSTITLIFLLAATSARVLDY
FT                 SKAKYIPIIDGRILIWEEFAFVKHSANLSEYRRVIEETNGMTVMFPQSHMQ
FT                 KLLVVDVAHLRDMLDSLSIHHRVARSLDFLGTALKVVAGTPDAEDFERIKF
FT                 NEFQLTNANNRQVNINNKVQIQINKISATVNQLLRSAKKSQIDTGHLFEML
FT                 LTRNRMIAMELQGLMLAVALAKVNIVSPSILDHADLEGVWMEEPTETAIRD
FT                 VLSVSSVKILQSDNILHFIIKFPKIKSACSKITVFPVSHHDTMLRLEDNVI
FT                 AECDSEIHTVEKCSPTSGATFCRLARRRSCAQELHAGGTAHCEIQQSDLHP
FT                 ITYVDEGIVIVNDRSAHVCVDNGTCVHIKGTYLITFEKSAMVNETRLVNHD
FT                 TAQKRAPGVASSPSLNVTMERDVLSLPYLHRLSERNLEHIKEFGKEINHHR
FT                 LHQLVFIAGAICCALICIGLTYRRVTQARKTAAQLKEMIAQIGSAEGGLIL
FT                 EGG"
XX
SQ   Sequence 3661 BP; 1098 A; 866 C; 790 G; 906 T; 1 other;
     ggcgcccatc gtaaaaaacc atgtaagtga gcacttttat ttacacagta cttctaagtc        60
     tgcatgaatt ttttttttgt ataaaaaaaa aaggaaagaa agacaagaat agtaaaatat       120
     tgtgccttac gctaacaaaa aactgcagcc ccataaaatt tttaaaattt aaataatctt       180
     tattagttgg ctgacggttt agcattaaca ttttttatct attataaaat gtttaaacca       240
     ttttattttg taaaccaatt attgtcccaa tattgtttgc atttctgttt tttgtgaata       300
     aataaatgaa tatttctata taacacaaaa agtgcggaat aaaaattcct aaccaaaccc       360
     aaaaaatcgc tggcagaaaa ttttaaattt caatcggaaa taatttatat aatcgcgtgt       420
     atttaattca gcttttatat gtcttttttg ttacacaaga attcttggta ttagccgcgc       480
     agttttggtt acttattttt cttttccgct ttgtttcccc actccatttt caagaacacg       540
     atacggccgc acatgcagtg tgtataagag tataagacaa ttctccagcg actctgagtc       600
     cgaggccgca aatatggcat tcagcatgga acaaatgacg gccactatac aggcggccgt       660
     taaccatgcc tttcgggaag ccaatatctg aaagccagcg tagacaaaat gagctacgtc       720
     tagctataca amaactgacc gaacgggtcg acgcaacaca aatcgctccc gcccaagcgg       780
     aagctcccca aatcaaagcc tataaaccta tagaaattag ggacgacgtc aaatgtgacg       840
     agcccctaga tgccgtcaac tgcctgcccg aatttacggg agcacaggac gcatacgtct       900
     cctggagaca agcggcagta gccgcatact atattttcag gaattatgta aatagctcgc       960
     gccattatca ggcagttatt attattagga ataaaataag gggccctgcc gatgccgtac      1020
     tgtcttcgtt tggcactgta ctaaatttcg acgcgattat aaatcgactc gactttacgt      1080
     acagtgataa gcgtcagatt cacgttatcg agcaagaaat gggtactctc aggcagggaa      1140
     atctaaccct cctgcaatac tacgacgagg tcgagaaaaa actcaccttg ctcaccaaca      1200
     aagctaccat gtcgtacgaa gcctcggcgg caaaagtttt gtgtgacaaa ttccgggatg      1260
     acgcactccg agtatttatc tcggggctta agcgcagcct cacggatgtc cttttctcgg      1320
     caaagccgaa agatatgcct tcagctctcg ctttggcaca agaagtggaa tctaaccacg      1380
     agaggtactc cttcgcggct tcatttgcca aaagccagga ggacaaagac aaaaatccgt      1440
     actacgccaa acaacgcaag gcgcaggtac actctgctcc acgcagtgca aatacccatg      1500
     aacccatgga catcgaccca tcgcggtcca agattcttaa tccatctcag gccccgtcat      1560
     accaaaacag ggagccaacc gtgtccgatc gatcgggcct acacaacaag cagaaggtta      1620
     accacgtcgc gcagagcgca ggcggaaccg gggagaaata tacagccgca gcttcaagca      1680
     cggctcagga aattgacgac gacgtcattc aagattatga ttcggacgtc attaattttt      1740
     taagggaata tccctgctac acgtcggcca acgacaagag gccagccgac ggggttcaaa      1800
     cggaatcgaa tgacccgcaa tacgcgatac aggatacgat taaacacgcc cagaataagt      1860
     tccgcgacag gagaaatgct tcccggcaaa acagggtttt cgaagttggc gaaaagatcc      1920
     tagtgtagtc tagcaggcga ctgagcaaca aactgtcacc tttgttcgag aaagaacccg      1980
     tagaagcgga catggggacc acagtcctca ttaaggggag ggtggtccac aaagacaacc      2040
     ttaggtaggc cgagcgtgac tcaactatcg cccgcctaat aatttttcat ctttttttat      2100
     tgtctttttc ctagccactt ggcataagct tttgcttcca ttattatttt aatcatgctt      2160
     taatggtggg ctacccagtt tcaattgaat tcacagcaca tccaaattac aggttttcaa      2220
     ccataaccct gattttcctt ttggccgcaa catcggcacg cgtcttggac tattccaaag      2280
     ccaaatacat tcccatcatt gatggtcgaa tcctgatatg ggaggaattc gcctttgtaa      2340
     agcactcagc gaatctctcg gaatataggc gcgtcatcga agaaactaat gggatgaccg      2400
     tcatgttccc gcaatcccac atgcagaaac tcctagttgt tgacgtcgcc cacctacgcg      2460
     acatgctcga ctctttgagc atccatcata gggtagcaag aagtttagac ttcttaggga      2520
     ctgcgctaaa agtggtggca ggaacgccgg acgcagaaga ttttgaaaga attaaattta      2580
     atgaattcca attaacgaat gcaaacaata ggcaggttaa tattaacaac aaagtacaaa      2640
     ttcaaatcaa taaaatttcc gctaccgtca accaacttct gaggtcagca aaaaagtccc      2700
     aaattgatac tgggcaccta ttcgagatgc ttttaactcg aaataggatg atagcaatgg      2760
     agctacaggg tttgatgcta gcagtggcac ttgccaaagt taatattgtt agccccagca      2820
     tcctagatca tgcagacctg gaaggtgtgt ggatggaaga gcccaccgag accgcgatta      2880
     gagatgtttt gtccgtatcg tccgttaaga tcttacagtc cgataacata ttacatttta      2940
     ttattaagtt tccaaagata aagtcggcct gcagcaagat caccgttttc ccagtgtcac      3000
     atcacgacac catgctcagg ctggaagata acgtcattgc cgaatgcgac agtgagatcc      3060
     acaccgtgga aaagtgctcc ccgacatcag gagctacatt ttgccgactg gctcgcagaa      3120
     gatcatgcgc ccaagagctt cacgctggag gcacggcgca ttgcgagatc cagcaaagcg      3180
     atttacaccc catcacttat gttgatgaag gaatagtaat tgtaaatgat cgctcggctc      3240
     acgtgtgtgt ggacaatggc acctgtgtcc atataaaagg cacatatctc atcacgtttg      3300
     aaaagagtgc catggtcaac gaaacccgat tggtcaatca tgacacagcc cagaagaggg      3360
     ctccaggagt ggccagctca ccttccctga acgtcaccat ggaacgtgac gttcttagcc      3420
     ttccttacct tcaccgactg agtgaacgta atctggagca catcaaagag ttcgggaagg      3480
     agattaacca ccatcggcta catcagttgg tgttcatagc gggagcaata tgctgcgctt      3540
     taatttgcat cggcttgacc tatcggcgag tcactcaggc ccgaaaaacc gcggcccagc      3600
     tgaaggagat gattgcccaa atagggtcgg ccgagggcgg cctcattctt gaagggggag      3660
     t                                                                      3661
//
ID   Gypsy-13_DBp-LTR repbase;    DNA;    INV; 495 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-495
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 676-676 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 495 BP; 142 A; 138 C; 100 G; 115 T; 0 other;
     agttaactga agttaaccaa gcagcggcaa tgtccgatta tttaagagct cgctctggcc        60
     aaactgctga catagcgtct ggccggaagc ccatgcatag cggcaagcac tgcacatttg       120
     cgtggccgct atgaaatact ttttgttagc tttaagtttc agtttgtgtc agagtctcat       180
     acaataaaga gcaccataaa accaatctcc ggcactgccg ttaacttgta aattcatttg       240
     ttgaatcggt caccgcgcct caagggccgt gacaacgggg caagtgctcc catcataact       300
     cccgtcacag aacggatctt ccctcggcaa ccgccaggga tctcaaccac tacctacaag       360
     gagtagcaac accccccggc aaccgccagg ggtaattacc ttacaacata tctccagcgt       420
     ctgcggcatc accgactgca gcgagggata accaacaaca acattattac acaaaccaat       480
     ttatattatt ttata                                                        495
//
ID   Gypsy-13_DEl-I repbase;    DNA;    INV; 4472 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DEl_;
KW   Gypsy-13_DEl-LTR; Gypsy-13_DEl-I.
XX
NM   Gypsy-13_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4472
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 534-534 (2012).
XX
RN   [2]
RP   1-4472
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]:sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4086
FT                 /product="Gypsy-13_DEl-I_1p"
FT                 /translation="MQHRSMMEVIRAVKSAEPQRSENNPVTLPKFNPDTAG
FT                 ASAASWCSTVDLIVSEKPMYGSALIIALSKSLEGSASNWLSQISYSGMTWN
FT                 QFKELFLQQFEGNETTAATVFNVFNGRPKDGECLSLYGSRQLTTLMAKWKS
FT                 MTTEQIALSVVLAHTAQIDSRLQRTVFTTDIKTRAELQNELKAFAFVNKGN
FT                 YIASENPVAKKPRLTTPPKCHFCGKIGHKIVDCHARKNSSKNQHGAHKISS
FT                 RPIDANRGTITCYRCGNPGHIASACPGRLSSQIQGKSEEKRINLCNVSGPI
FT                 STLTSSGESYPFCFDSGAECSLVKESVSQQLSGTRTNNVVSLRGIGNNTVT
FT                 STLQILSNVMISEYTLEVILYVVQDSYINYSIIIGREILSQGFGVSITIDK
FT                 FKLFKTVSVNTCSALINSFNFSNIDTGLDGVNKSSLLCILNEFSDAFIDGF
FT                 PKSRVTTTEFHIRLINPNKTVQRRPYRLSIEEKEVVRKRINELLQANIIRP
FT                 SSSPFASPMLLVKKKDGSDRLCVDYRELNSNTVAEKFPLPLINDQIARLGG
FT                 VKYFTCLDMASGYHQIPIHPNSVERTAFVTPEGQFEFLTMPFGLKNAAPVF
FT                 QRAVIKALGELAYSYVVVYMDDILITSGTEEEAFERLRTVLSLLSQAGFSF
FT                 NIAKCSFLKTSVDYLGFQIKDGEVRPNPRKVHALVNLPPPQSVTQVRQFIG
FT                 LASYFRQFVPKFSEIMKPLYAVTCKNKVFEWKSDHEEVRKKIIKILTDKPV
FT                 LFIFDPKYPLELHTDASMDGYGAILLHKIDNKPRVIEYFSKQTSATESRYH
FT                 SYELETLAVFNAMKHFRHYLHGRHFVVFTDCNSLQATRNKISLTPRVQRWW
FT                 AYMQMFDFDIKYVPGAKMAHVDFLSRNPMPSKVITKLYPSPENKCVSLAEI
FT                 SDNWLLAEQQRDEETLSIISRIQNEELGEDLAKTYELRSKILFRIIQRNGR
FT                 TRSLPVVPRSFRWSVVNHVHEAIVHLGWEKTLDKMYEFYWFDNMSKYVRKF
FT                 VSNCITCKLTKPPSGKLPIELHPIPKVDIPWHTVHIDITGKLSGKRDQKEY
FT                 IIVQVDAFTKFVYLHHTINITSESCVEAVKSSISMFGIPARIIADQGRSFT
FT                 GAVFGDFCNMQKIQLHLIATGASRANGQVERVMSTLKGMLTAVESSQRTWQ
FT                 DALGEIQLAINCTVNRITKASPLELLIGKEARPFNMLPLCEGNNKVDLSTV
FT                 RNKAKENMENNAKYEKKRFDKNKCKVKSFKIGDYVLLKNEERHQTKLDNKF
FT                 KGPFLVSELLEGDRYVLKSLTNKRTYKYAHEALRKMPIEEIPRELDVCNER
FT                 IENDDSLLVDSNEASDVEGDVASQLEDSN"
XX
SQ   Sequence 4472 BP; 1470 A; 846 C; 944 G; 1212 T; 0 other;
     tcagaagtgg gatcgcctac accccaagtt gagtccgatg atcgcgtttg tgcacttcta        60
     gaaatgcagc accgaagcat gatggaagtg ataagagcag tgaaaagtgc agagccacaa       120
     agaagtgaaa acaatccagt gacattacca aaattcaacc ccgataccgc aggggcaagt       180
     gcagcgtctt ggtgctctac agtggacctg atagtgtcag aaaaacctat gtatggaagc       240
     gcactgatca tagcactgag taaatcccta gagggtagcg cttccaattg gctatcccaa       300
     attagttatt ctggaatgac ctggaaccag ttcaaagaac tctttctgca acaattcgaa       360
     ggcaacgaaa ctacagcggc tacagtgttc aacgttttta acggtcgccc aaaagacggc       420
     gaatgtttgt ccctttatgg aagccgtcaa ttaaccactc tgatggccaa gtggaaatca       480
     atgacgacag aacaaatagc cttgtcagtt gttctagcgc ataccgccca aatagactct       540
     agattgcaac gtacagtctt tacgaccgac attaaaacac gagcagagtt gcagaacgag       600
     ttgaaggcat tcgcattcgt caataaggga aactatattg cttcggagaa tcctgtggcc       660
     aaaaagccgc gcctgacaac accacctaaa tgtcacttct gcgggaaaat cggtcataag       720
     atcgtcgact gccacgcgag gaaaaacagc tcaaaaaacc aacacggagc ccataaaatt       780
     tccagccgac cgatcgacgc taacagggga accattacgt gctaccggtg tggcaatccg       840
     ggacatattg catcggcttg cccaggacgt ctatcatcac aaatccaggg caaatcagaa       900
     gaaaagcgta ttaacttgtg taacgtatca ggaccaataa gcactttgac atcatccggt       960
     gagtcgtatc cattttgctt tgattctgga gcagagtgct ccctcgtaaa agaatcggta      1020
     tcccaacagc tgtccggcac acgaaccaat aatgttgtta gcttaagagg gataggaaat      1080
     aatacggtaa ctagtacgtt acaaatatta tctaatgtca tgattagcga gtacacgctt      1140
     gaagttattc tgtatgttgt tcaagatagt tatattaatt atagtataat aattggccgc      1200
     gaaattctaa gtcagggctt tggcgtatca ataacgatcg ataaatttaa actgtttaaa      1260
     actgtatctg taaatacctg ttctgctttg attaatagtt ttaatttttc aaatatcgat      1320
     accggtttgg atggtgtaaa taagtcaagc ttgttgtgca ttttgaatga attctcggac      1380
     gcatttatag atggattccc taaaagtcga gtgacaacca cagagtttca tattcgatta      1440
     attaatccaa ataagaccgt ccaaaggcgg ccatacagac tcagtatcga ggaaaaagaa      1500
     gtagtgagaa aaagaataaa tgaattacta caagctaata tcatccgtcc tagctcttct      1560
     ccatttgcta gtccgatgct tctggtaaaa aagaaagacg gatctgaccg actctgtgta      1620
     gactaccgcg agttgaattc gaacacggtg gcagaaaagt ttcccttgcc tcttattaat      1680
     gatcagatcg ctagattagg tggggtaaag tattttacgt gtttggatat ggcaagcggt      1740
     tatcaccaga tcccgattca tccaaactca gttgaacgta cagcattcgt tacaccagag      1800
     ggtcaatttg agttcttaac aatgcctttc ggacttaaga atgcggcacc tgtgtttcaa      1860
     agggcggtaa ttaaggcgtt aggtgagctg gcatattcat atgtcgtagt ttatatggat      1920
     gatatcttaa taacctctgg tacagaagaa gaagcatttg aaagattaag aacagttcta      1980
     agcttattat ctcaagctgg tttttcattt aatatcgcga aatgttcctt tttaaaaaca      2040
     agcgtggatt atttaggttt tcaaatcaaa gatggcgaag ttagacccaa tccacgaaag      2100
     gtgcatgctt tggtcaatct accccctcca cagtcagtta cacaagtaag gcagtttatc      2160
     ggtttggcgt cctactttcg acagttcgtc ccaaaatttt ctgaaataat gaagccattg      2220
     tacgccgtta cctgtaaaaa taaagtattc gagtggaaaa gcgaccatga ggaagtgcga      2280
     aaaaaaatta tcaaaatttt aactgataag ccggtgcttt tcatttttga cccgaaatat      2340
     cccctcgaat tgcacactga cgcgagcatg gatggctacg gtgcaatact acttcataaa      2400
     atcgacaata aacctagggt cattgaatat ttcagtaaac aaacatctgc aactgaatca      2460
     cgttaccact cttacgagtt agaaacacta gccgtgttta acgctatgaa acatttccga      2520
     cactatttac acggccggca ttttgttgta tttacggatt gtaattctct gcaagctacg      2580
     cgaaataaaa taagccttac accaagagta caacgttggt gggcctatat gcaaatgttt      2640
     gatttcgata taaaatatgt acctggtgca aaaatggccc acgtagattt tttatcacgc      2700
     aacccgatgc catcgaaggt aattactaaa ttgtatccca gtcctgaaaa caaatgtgtt      2760
     tcgttggccg aaatatcgga caattggttg ctggctgagc agcaacgaga tgaagaaact      2820
     ttatccatta tttcaagaat tcaaaatgaa gaactgggag aagatttggc caaaacatat      2880
     gaattgcgtt ctaaaatact tttccgtata attcaaagaa atggtaggac gcgcagcctt      2940
     ccagtagtgc ccagatcatt taggtggtcg gtagtaaacc acgtccatga ggcaatagtt      3000
     catctagggt gggaaaagac attggacaag atgtatgagt tctactggtt cgacaatatg      3060
     tctaaatatg tccgaaaatt tgtaagtaat tgtatcacct gtaaattaac aaaaccaccc      3120
     tcgggtaaat taccaattga actccaccct ataccgaaag tagatattcc atggcacact      3180
     gttcacatag atataacagg aaaattaagt ggcaaaaggg atcaaaagga gtatattata      3240
     gtccaggttg atgcctttac taaatttgtt tatttgcacc ataccataaa tattaccagt      3300
     gaaagttgtg ttgaagcagt gaaatcgtcc atatctatgt ttggcatacc agcaagaatc      3360
     atagcagatc agggaaggag ttttaccgga gcagtctttg gagacttttg taacatgcaa      3420
     aaaatacaat tacatttaat tgcaacggga gccagccgtg caaacggcca agtagaacga      3480
     gtaatgagca ccctgaaggg tatgctgact gccgtagaaa gtagtcagcg tacttggcag      3540
     gacgctttag gcgagataca attggccata aactgtactg taaatcgaat tacgaaagca      3600
     agtcctctag aactattaat tggaaaagaa gcgagacctt ttaatatgtt acccctctgt      3660
     gaaggaaata acaaagtaga tttaagcact gtaagaaata aagccaaaga aaatatggaa      3720
     aataatgcta aatatgaaaa gaaaagattt gataaaaaca aatgtaaagt taaaagtttt      3780
     aaaattggtg attatgtttt gcttaaaaac gaagagaggc atcagaccaa attagataat      3840
     aagtttaaag gcccattctt agtgtcagag ttacttgaag gcgaccgcta tgttctaaaa      3900
     tcactaacta ataaacgaac gtataaatac gcgcacgaag ctttaagaaa aatgcctatt      3960
     gaagagattc ccagagagtt agatgtatgt aatgagagaa tagaaaatga tgatagctta      4020
     ttggtggatt ccaatgaagc aagcgacgtg gaaggcgacg tcgcgagtca gttagaggat      4080
     tctaactaag atgtggcatt gatggacttc aatgcgagat tctgtacaat catacaccta      4140
     gatcaactct agccactagg ttgctgtagg tgcatacatg atcatgtatt cacctggcta      4200
     tggtgaggcg cctaattagt ggtggaaacc tgattggtgt gtttgtggta gatggtattc      4260
     aaatctttgg gaatcgattt ctagtaaagg ctcttcgcaa acgaataatc taattaacta      4320
     gtaactattg aaaaaagtaa caacgagcga cgtattaata cgttttatta tttttttatg      4380
     atcgtttcag attgaacgat accttctaat tactcttagt attttcatta aaatttgtaa      4440
     cacacgagga cgtgtggata tcaggatggc cg                                    4472
//
ID   Gypsy-13_DEl-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DEl_;
KW   Gypsy-13_DEl-I; Gypsy-13_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-441
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 535-535 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 441 BP; 116 A; 75 C; 109 G; 141 T; 0 other;
     tgtcggatct ttagttttgt tttcgtggta ttacgctatt aaaataagaa ttaacatgaa        60
     atgctgactt acttggaatt acatttttac ttagaattaa agcttatgtt atgaatgcca       120
     ctcgttgctt tttattcctc ccttcgcatt cctttcttta tatgagtttc tgtgtgtaag       180
     tgttgcgttg agcctaacgg aggtctgtta tgtgcagtct cggtgtgaca tggtgcgagt       240
     aaaagagacg gccatatggt atttggcaaa gtatgtgaac aagaggatgt tgaccaattt       300
     gggctgtata aaagggagtt ctgattgata gatcagacag tctcgatcga ggtgcggtcg       360
     aaaggttacg aaatgtcaca gccgagaaag cgcacggctc gcaacgccgc agaattcatt       420
     gaggaactcg atgttccgac a                                                 441
//
ID   Gypsy-13_DEu-I repbase;    DNA;    INV; 6341 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   16-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DEu_;
KW   Gypsy-13_DEu-LTR; Gypsy-13_DEu-I.
XX
NM   Gypsy-13_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6341
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 873-873 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1229..5062
FT                 /product="Gypsy-13_DEu-I_1p"
FT                 /translation="KSPTGVSDVRKEARLHHFGATYHFSGKLRGHPRSEHG
FT                 KPCQNVGRTTASAEKERVRDPSVCRSITNRSTKFRTTSQTTTHPSHSSTIS
FT                 SSSGEHVNGAEFQFCLQELCPGGSPVSYMSQSQSPLLLGLWSQRSTHSRVL
FT                 PSYPAGKREESSPPRGADGDCLQESPELGEILQVQSSRIIAQVQIEGREFN
FT                 ATIDTGASRSFVSERVVQRVGTPLNVRSVHTHVSLAEGSRKEITKSLVAEV
FT                 RLDQRWVTVPLLVFPSIMEDVLLGMDFLCGVSATLQCGRASLQLNPLLISS
FT                 PTNDLAMPSLLTNAXTPASNDPDNEREATPTRSILGPRDDNAVRNNPFRRN
FT                 QATVSAEPVEEGRAPSPARPGYTPDAGGALAVITANTEQEELEPWVNKFLQ
FT                 EELAKFEGLTGVSNIAEHTITMRDDKPIKQRYFPKNPAMQRIIDERIDELL
FT                 HNDCIEPSRSPHSAPIVLVGKKSGEMRLCVDFRQLNAHSIPDAYPLPRITH
FT                 ILERLRHARYISTLDLKSGYWQIPVAESSRECTAFTVPGRGLYHWKVMPFG
FT                 LHSAPATFQRALDSVIGPDMEPNAFAYLDDIIIIGRTLEEHVQHLQEVFRR
FT                 LREANLRLNAKKCSFFKRRLAYLGHIISEEGIHTDPDKISAVRQLSPPTTC
FT                 KELRRCLGIASWYRRFVPNFASVVQPMSLLLKKGKKWQWEQEQQDAFEELK
FT                 RKLTEAPVLACPDFNEKFVLQTDASDIGLGAVLTQKIQGEERVIAFASRRL
FT                 IAAEENYSATEKECLAIIWAIRKLRCYLEGYRFEVITDHLALKWLNSIDNP
FT                 TGRIARWALELQQYQFDVTYRRGSQNIVADALSRQPLEVLQMIQEDKPGCT
FT                 WYQRMLKLVQDRPKDYPDYAYENQQLYRHIGSRPDDEDSVPWKLCVAKEHR
FT                 QRVLSECHDQPTAGHLGIRKTTTRIAQRYYWPGLFRDIARYVRKCDTCQRF
FT                 KVSQTKPAGKMFTRQINEPFDTVCADFIGPLPRSKSGNTMLLVFFDAFSKW
FT                 VELVPLRKATSAHLEKSFRERILNHFGIPRTFVCDNGTQFTSRSFKAFCKQ
FT                 AGMEIQHTAPYTPRQNPTERANRTIKTMVAQYIEDKQTTWDELLPELNLAI
FT                 NSSISDSTGFSPAFIVQGREPRLPGALYDEVTPGPSQAPRSPEAKAELLRD
FT                 IFKVVQENTQRASLEQRKHYDLRRRAWRPTIGSLVFVKQHHLSRAADNFAA
FT                 KLAPKYEGPYKVIKFVSPTIVRLQHTQSRQRRTASLGDLKEAVNEPETQNL
FT                 VPRRLDDNEDIQMAEQV"
XX
SQ   Sequence 6341 BP; 1728 A; 1671 C; 1694 G; 1246 T; 2 other;
     gaatggcgcc cgaacaggga catggggttt acgaaatttt agacgaccta aatatggcct        60
     aaagacccat ctgggtacat ggagtttgaa aaattttcgg ttcagtcact tggaggcgaa       120
     atttttaagt cggaacgtaa ggagagtcat atatcgaggg acacaaaaat ttctagggca       180
     gaaaacaggg aaatatatat ataccacgca tcgaactaaa aaaaattaga atttcagcag       240
     acatttctaa cgcacgcaga cacacataca tttatttcta agcagagaaa gtacataacc       300
     taaaatcaga gattatttgt tccaagatca cgtggccagc aaatcacgtg aggaagaaac       360
     acatacaggc agataatcgg agagagagag cgagagccct ctaggttagc cagctcaggt       420
     cacgagagtt tcgaaagcac gaggtaggga aaagctaacg tatactcctc acagccagcc       480
     attttgtttt ttcgtttcac tctcatcgtc gtmtctctca cacgaggagg ggtcgatcga       540
     gtacaggcaa cgggatcaca tcggttgggg tttttggttt tttctcatac aaccgtcgcc       600
     gagtcaacac gtgcatcggc agctctctaa aacatcgtcg tgggaaaatt taaaactacc       660
     tcgtcgtcga acaaaattta atcaccgtcg agaaaattta ggaattaaat cgtcgtttga       720
     catcggattg tggtcaccat cgttgcacgt gggaattcag taaattcttg gtgacaaata       780
     aaataaaatt ttcgatgaag attttaacca gttcgaacct cgtttgaccc tcgttcaaga       840
     atttctctcg tcctatcgaa atttttcctg tcgtttgcca gttaactatt atttcacagc       900
     aatatgggcg cgcgttggat ttcgtatctc cggaagcggg aattggaggc gattctgaag       960
     gagttttcct tggaagcaac cggaacagtt gaggaaatga ggagccggct ggctgctttt      1020
     aataatcggg acgatcacgt gctggagata gccgagcgac tacaggaatg cgaggcggaa      1080
     attacagccg cgctaacgga taggaagcag cgttcgccga ctccgaaccc acccccaccg      1140
     ggactttcaa acaataccta gtcagcatca gactcatgat gcacagagcg gggtataatg      1200
     cggagcagga gttggaacgt atctatgaaa atctccaacc ggagtatcag atgtacgcaa      1260
     ggaggcacga cttcaccact ttggagcaac ttaccacttt agcggtaaac ttcgaggtca      1320
     cccgcgatcg gagcacggga agccatgcca gaatgttggc cgaaccaccg ccagcgccga      1380
     gaaggaacga gtacgagatc ccagcgtatg caggagcatc accaacaggt caacaaaatt      1440
     tcgcacgacc agccagacga ccacccaccc cagccacagt tccacaatca gttcctcgag      1500
     tggggaacat gtcaatggtg ccgaatttca gttttgcttg caggaattgt gcccaggagg      1560
     gtcaccggtc agctacatgt cgcaatccca gagtcctctt ttgttgggac tgtggtcgca      1620
     gaggagtacg cactctcgag tgttgccgtc gtacccagcc gggaaacgag aggagtcttc      1680
     gccccctcgg ggagcggacg gagactgcct acaggaatcc ccggaattag gagaaatctt      1740
     acaggttcag tcgagcagaa ttatcgcgca ggtgcaaatc gagggtcggg agtttaacgc      1800
     tactatagac accggagcta gcagaagctt cgtgagcgaa cgagttgttc aacgtgtagg      1860
     gacgccactt aacgtacggt cggtacacac tcatgtcagc ctggcggaag gctcacgcaa      1920
     ggagataacc aagtctctgg tagccgaagt tcggttggac caacgttggg tcaccgttcc      1980
     actgctagtt ttcccttcga tcatggaaga cgtgctattg ggcatggact tcctttgtgg      2040
     cgtgtctgcc actctccaat gcggccgcgc ttcgctgcag ctgaaccctc tcctaatcag      2100
     cagccccaca aacgacttag ctatgccttc tctcttgacg aacgcgttna ctccagcaag      2160
     caacgatcca gataacgaga gggaagccac cccgacccgc agtattttag ggcctcgaga      2220
     cgacaacgcc gtgcgaaata atccgtttcg acggaatcaa gccactgttt cagcggaacc      2280
     agtagaggaa gggcgagcgc cttccccagc cagaccaggg tacacacctg acgctggagg      2340
     agcactagcc gtaatcacag caaacaccga gcaagaagaa ttagaaccct gggtaaacaa      2400
     attcctacag gaggaattgg ccaaattcga aggattgacg ggagtgtcaa atatcgctga      2460
     gcatacgatc acgatgcggg atgataagcc catcaaacag aggtactttc ctaagaatcc      2520
     cgcgatgcag aggattattg atgagcggat cgacgaactg ctacacaacg actgtataga      2580
     gccttcacgg agcccccaca gcgcccctat tgtactcgtg ggcaagaaat ctggagagat      2640
     gcgactatgt gtagattttc gacaactaaa tgcccattct attccagatg catacccgct      2700
     gccaaggata acgcacatct tggagcgtct gcgccatgcc aggtacatat cgacgctcga      2760
     tttgaagagc ggatattggc aaattcctgt agccgagtcc agccgcgagt gcacagcatt      2820
     tacagtcccc gggaggggct tgtaccactg gaaagtgatg ccgtttggcc tccactcagc      2880
     accagccaca ttccagcggg cgctcgacag cgtcataggc ccggacatgg agcccaacgc      2940
     gtttgcgtat ttggatgata tcatcatcat cggccgcact ttggaggagc atgtgcagca      3000
     tctacaagaa gtattccgac ggctacgaga ggcgaacctt cgtctcaacg cgaagaaatg      3060
     cagtttcttt aagcgcaggc tggcgtactt gggacacatc atcagtgagg agggaattca      3120
     cacggatccc gacaagattt cggcagtacg gcaactgagt ccgcccacca catgcaagga      3180
     gttgaggaga tgtcttggga tcgcgtcatg gtacaggaga tttgtaccca actttgccag      3240
     cgtagtgcag cccatgtctt tgctactcaa gaaaggaaag aaatggcaat gggagcagga      3300
     gcagcaagat gcgttcgagg aactcaaaag aaaactcacg gaggcgccgg ttctcgcctg      3360
     ccccgacttc aacgagaagt tcgtgttgca aacagacgcc agcgacatcg gcctaggagc      3420
     agttttaacg cagaaaatcc agggagaaga acgagtcatc gcattcgcca gcagacgcct      3480
     catcgccgca gaggagaact actccgccac agaaaaggag tgtctggcta tcatatgggc      3540
     catcaggaaa ctccgatgct acttggaagg ttatcgattc gaggtgataa cggaccacct      3600
     cgccttgaag tggctcaact cgattgataa tcccaccggc cgcatagcgc gctgggcgtt      3660
     ggaactgcag cagtaccagt ttgacgtcac ctatcgacgc gggagccaga acattgttgc      3720
     agatgcactt tctcgacagc ctttggaagt tcttcagatg atccaggagg ataagccggg      3780
     atgcacatgg taccagcgga tgctgaaact tgttcaggac aggcctaaag attacccgga      3840
     ctacgcgtac gagaaccaac agctatatcg gcatatcgga tcccgacccg acgacgaaga      3900
     ctccgtgccc tggaaactgt gcgtggccaa ggaacaccga cagcgagtac tgtcggaatg      3960
     ccatgaccag cccacggcag gacatctcgg gatcaggaag acaaccaccc ggatcgccca      4020
     gagatattac tggccgggtc ttttccgcga tattgccagg tatgtccgca agtgtgacac      4080
     ttgccaacgg ttcaaagtca gccaaaccaa accggcgggt aaaatgttca ccagacagat      4140
     taacgagccg ttcgatactg tctgcgccga ttttattggg ccccttccgc gatccaagag      4200
     tgggaatacg atgctgctcg tattcttcga cgccttttcg aaatgggttg agttggtccc      4260
     cttgagaaaa gctacttcgg ctcatctcga aaaatccttt cgggagagga ttttgaatca      4320
     ctttggtatt ccccgaacgt ttgtctgcga taatgggaca caatttacga gtcgttcatt      4380
     caaagctttc tgcaagcagg cgggaatgga gatccaacat acagcacctt atactccgcg      4440
     gcagaacccg acagaaaggg ccaatcgcac cattaaaacg atggtcgccc agtatatcga      4500
     ggacaagcag acgacgtggg acgaacttct gcccgaactg aatctggcaa ttaatagcag      4560
     catctcagac tcaaccggat tcagtccagc gttcatcgtc caaggcagag agccacgact      4620
     cccaggggcc ttgtatgatg aagtgactcc gggaccaagc caagcgccac gttcacccga      4680
     agcgaaagcg gaattgctac gggacatttt caaggtagta caggagaaca ctcagagagc      4740
     ttcgttggag cagcggaagc attacgatct caggcgacgt gcgtggagac cgaccatagg      4800
     atcgctggtc ttcgtaaagc agcatcattt gtccagggcg gcggataact ttgccgctaa      4860
     gctagcaccc aagtacgaag gcccgtacaa agtaattaag ttcgtttctc ccaccatagt      4920
     gcgcttgcaa catacccaga gcaggcaacg cagaacggca tcccttggag atttgaagga      4980
     agcagtcaac gagccagaaa cccagaatct ggtacccaga cgactggacg acaacgaaga      5040
     cattcagatg gcggagcaag tttagcgatc gattgacgct aaaaacccgt agcagagcaa      5100
     cagcaacagc agagatacag aaaccaagga tacccgcatc aaggcggaag caacggagaa      5160
     gccagcacga agaaatgtac acatcaagac gagagcagcg gagaagcatc cgaggatacc      5220
     cgcagacggc gggagcatac acgaagatag cagcgcagca gcagccccag aagtccgtac      5280
     gaagacggca caatagcaac gaactcgccg caaacaagcc ggcgagcgac gctcgatccg      5340
     gccgaggcga ggccaaccag gaacactgcg acaggagcca atgtttgagt cagtggggcc      5400
     acttgctgga gggtgcgcct tcccaacgtc cacttcccta gtgggaactc aacgctccca      5460
     gtgccactgt agcgaacctt ttctccccat gattactaac taaacaatta aaacccagtt      5520
     agtaatcgtt aaaacaaagc actaataccc ttttgttctc ccctacagac atggcgtcgg      5580
     acaacccgtc ccacctgtgg cgcatggcga cgcaagccac ggccacctta gaagacgcga      5640
     gcccgaacgg agtcgtcatt gactatccgg cagagaagga cgacgaccaa cgctcggcgc      5700
     tgctacgggg cgaaggcaca ggccgaccct ggggcgtacc ccactcggcg agaaaaaggc      5760
     tgccccaggc ctgggcgaag cggccgtata cgcctgggta gccgcggtgg tgcccagcct      5820
     ggtgccatcc gcttctcgtg gggtgacgtt tggggacgtg accgaggtgg tcatgccccc      5880
     acggggcggt cagaacccca gcagcagcga tgacgacgac ccctgaagct ccaattccgt      5940
     ctacgccgcc cacgaggagg agatggcccg ttggcgagcg gagctacaaa ccattgtgga      6000
     ctatgtcgag tcagagaaag cccggaagga gcaggcgcag cgtcctgaga accgcctcac      6060
     acccgtctcg ggtgacaccc cggaaatcct ggccaaggaa gaacatgtcg aatacccgcc      6120
     ggccgacgaa gactgggtct tgccgccccg ccactggagc gttctgatcg aggggggacg      6180
     cattccccgc tccttggtcg agctggggca gccacaggag ggcacgaacc ggcgggtaaa      6240
     tcgcaaattt ctgttccgtg cgggagcaga tgaattccag gtacacataa caaaaaccga      6300
     ccggattatc atttcgcaag gcacccgagg taggaggggg t                          6341
//
ID   Gypsy-13_DEu-LTR repbase;    DNA;    INV; 1148 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   16-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DEu_;
KW   Gypsy-13_DEu-LTR; Gypsy-13_DEu-I.
XX
NM   Gypsy-13_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1148
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 874-874 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1148 BP; 353 A; 297 C; 270 G; 228 T; 0 other;
     tgtgaggagt cgtttgactc ttaacaaata gcgccaacaa caacggcagc cagcgccaac        60
     aacatcggca gccagcaaca accacaacgc cagctagcgc caacaacatc ggcagccagc       120
     gctaacaaca acgccagtta gcgccaacaa tattggcagc cagcgccaac aacatcggca       180
     gccagcagct acaacatcgc cagccgcaac gccaaaaggc gtcgccttgg cacgcgccaa       240
     gggaagagcc agagaaaagg agtaccgaaa cttcgagaag tggaaaaaac ccagagcagc       300
     cgaaaacttg aacaaaacgc ggtgcaaagc ttgactctga aaaacgcggc gaacgggatc       360
     agaagtgcga gcagagcaaa ctcatgcaga caacgagagt cttttgcgtt ctgagtgcgg       420
     aaaagttttg ggaaaaaaac accccaaaaa cagtcgagtg acttgtgcca agtgacccag       480
     gaaccagaaa acccaggaac cgacgatttc tttttgggaa ggagtttacc tagacgacct       540
     cgaggagagt gtgccggccc acgaccagcg gcggagcacc cggattcacg cttttgtgtg       600
     tgcgtgagag cgagacgggt gagtgagtgg agtgaaccgc gttttggcca gcgagagtcc       660
     cgtgcaatga gaaatttctc gaaggcctcg atgcggcttc gccaagagta ggctagaatt       720
     tatataacat gacctaacct aacccgttaa cctgcgagca ctgatgaaaa atgctcctat       780
     aaatgtattt ctcgactaat tttaatacaa ctcgtagaaa agaatgaaaa tcaagctggc       840
     cacgcataaa tataattatt tcaagacaaa tgcctatatc ttaggccata aattctgccc       900
     tagggaaaag ttgtctcgca atgctatgag ccaggcccaa atgccgttac tgctgaccct       960
     tttcgctctg cagcagacac cgaataaact atttctctta ctccgtatcc cggtggctgg      1020
     cactttaaat ctcacgctag ccaaccgatt ttcgttctag acctttttgt accatatctt      1080
     tacaaataat ttcggtaaag agaccctggc gggactgagt atatcccagc cgacgagact      1140
     tctttaca                                                               1148
//
ID   Gypsy-13_DFi-I repbase;    DNA;    INV; 5334 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DFi_;
KW   Gypsy-13_DFi-LTR; Gypsy-13_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5334
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 913-913 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4342-4650] - Integrase core
CC   'ACCAT' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..1602
FT                 /product="Gypsy-13_DFi-I_1p"
FT                 /translation="MSVSDNKAQPTITVVAATAPTVYQMSAVPELLPSRET
FT                 FLIWKEKLDINFCEPNITEDNAKKATLLKSIGAGPYSVVHNLRSPDSPVSK
FT                 TYKELCGILTTHYTPPTLVFRERKKFHESEKNEGETVAEWYSRVKQLALNC
FT                 KFGQYLEAFVLNQFIMSLPIPIFERICEEDEKITVADALRKAMILETKIIA
FT                 KKNEDSVNFVRRNNGTRHGQRQNSENDGYERKFKGEQGQHGSRQRNAGSDV
FT                 YGSRGEKQRKACAHCGWRNHISDECKYKRSSCHTCGKIGHLSTVCRLKSDN
FT                 SIGFVQNYNSRIYDSDSEINNFNFSIYSVVSASSGEVYFLNVIIDGCQMKV
FT                 ACDTGAPCTLVSLSFYKSLKNKKPLRKCRTPYVDYNGDLIKVVGEYDATFE
FT                 YRGTKKEIMIVVTNSMSPPLLGRSFLRIFNFELVQVNSINTQKSVITEQIK
FT                 SEFSEVFESGIGAYKVNKVNLMLEKDSKPIFFKPRQLPLAWKDKIEKKLFF
FT                 VLWQNKEC"
FT   CDS           2889..4097
FT                 /product="Gypsy-13_DFi-I_2p"
FT                 /translation="MDSLFQGIRGVVVYQDDITITGRNLQEHITSLKIVLN
FT                 KLKTVGLKVKNEKCEFFKPKICFLGFTIDQNGLSKNNDGISSISLAPTPKN
FT                 VSELRAFIGMVNYYSKFINHFAQKMSPLYALLRKDIKFLWTEESQNAYDVI
FT                 KKEVTSEQVLVHFNPDLPIVLTTDASNDAVSGVLSHKVGEDLKPIAFVSRA
FT                 LSKCESKYSTIEKEALAIIYCVVKLKQYLLGNKFILRTDHKPLLGIFDETK
FT                 SLPLMASARMQRWAVILSGFAYSVEYIKGSLNEADGLSRMPQFKVGIENEE
FT                 YNFINFIQSDNIFKLSFKNISQETRRDPILAKVCEAIKEGSISRLKGSEFS
FT                 CFVQKSNELSVEYDCILWGHRVVVPSKLRKKNTPRISQLTFGNSKDKNAST
FT                 VLCMVAKFR"
XX
SQ   Sequence 5334 BP; 1908 A; 840 C; 998 G; 1588 T; 0 other;
     tatttggcga cgaggacaaa acggattgca aaaataaaaa ataaaacaca gtgaatcgta        60
     ttacgaaacg taaatcaaaa ttacaataca atgtcggttt cggacaataa agctcaacca       120
     accatcacag tggtcgcagc gacagcaccc acagtttacc aaatgtctgc agtcccagaa       180
     ttgttgccga gccgagagac attcctaatt tggaaggaaa agctggatat taatttttgc       240
     gaaccaaaca ttaccgaaga caatgcaaaa aaagcaacat tgttgaagtc aattggtgcg       300
     ggtccatata gtgtcgtaca caacttgcgc agtcctgact cgcctgtttc aaaaacatat       360
     aaagagcttt gcggaatact cacaactcat tatacaccac cgactctcgt atttcgagaa       420
     agaaaaaaat ttcatgagtc tgagaaaaat gaaggtgaaa ctgttgcaga gtggtattcc       480
     cgggtaaagc aattggcact taattgcaaa tttggccaat atttggaagc ttttgtttta       540
     aatcagttta tcatgagtct tcctatacca attttcgaaa gaatatgtga agaggatgag       600
     aagataactg ttgccgatgc actcaggaaa gccatgatac tcgagacgaa aatcatcgca       660
     aagaagaacg aagacagcgt caactttgta aggcgaaaca acggaactag gcatgggcaa       720
     aggcagaata gcgaaaatga tggatacgag agaaaattca agggcgagca agggcagcac       780
     ggatcgaggc agagaaacgc tggcagcgac gtttacggaa gcagaggcga aaagcagcga       840
     aaggcgtgtg cacactgtgg ctggagaaat catatttctg acgaatgcaa gtacaagagg       900
     agcagttgtc acacttgtgg aaaaattgga catttatcaa cagtctgcag attgaaatca       960
     gataattcta ttggttttgt acaaaattat aattcacgaa tttatgattc tgattctgaa      1020
     ataaataact ttaatttttc tatctatagt gtggtctcag cctcatctgg tgaagtttat      1080
     tttttaaacg ttattattga tggatgtcaa atgaaagttg catgcgacac aggagcaccc      1140
     tgtacactgg tttcgctgtc gttttacaag agtttgaaga ataaaaaacc gttgagaaaa      1200
     tgtcgcacac cttatgtcga ttataatggt gatttgatta aagttgtggg tgagtacgat      1260
     gcaacatttg aatatagagg taccaagaaa gaaattatga ttgtagttac gaattcgatg      1320
     agtccaccct tacttggtag atcgtttctg agaattttca actttgagtt agttcaagta      1380
     aattcaataa acacccagaa atcagtcatt actgaacaaa ttaaatcaga gttttctgag      1440
     gtttttgagt ctggcatagg agcttataaa gtcaacaaag taaatttaat gttggagaaa      1500
     gacagtaaac ccatattttt taagccaaga caattaccac tagcctggaa agataagatt      1560
     gaaaagaaac tcttcttcgt tctttggcag aacaaggagt gctagaacgc gtagatagct      1620
     cagactgggc tacaccatta gttcctattc ttaaccctca gcgcacacac ctctgttttt      1680
     taacataacg cacacactgg gtgtttttca cccattcgac tttgcctgtt aataacttta      1740
     cttgtaattg tccgattttc aaaaactttt ttttgtaata tggagaattt tctcaagaat      1800
     attatggtat aagctgtgaa gttttaaatt caatttttca tactttaatt cgtaaaaaac      1860
     tgattggtgt tcatgaaaaa gtcacttttt tttcaaaaat tgttattaaa atgaaaaaaa      1920
     gtgatcaatc tacaaaagaa atcatttttt cgagagttca gggtacgaaa tttcagattt      1980
     taatggcagt ttaaccgtac tctctaaaaa gtatattttt ttagtcattt gaaaatgggt      2040
     caattttttc gttgttgcgg gtaaagtgtg gtatagagta atgcattttg gggctcaaat      2100
     tctttgtttt ttgtgtttag acactttgtt ctcaagtgaa aagtcttttg ggtcgtccat      2160
     ttcaggccta tcttggtagt ttacgaattg ttcaatttgc aaccgcaatt gcatttgcaa      2220
     cgatggtaac aacaatctcc taaccagaaa tggcttcaca agggcccgcg tcagcatatt      2280
     ggcgcctttt ctatgaaaac aatgatatgt cacatgtaaa aactcgaaaa agggggtcaa      2340
     ttaaaatttc aaactaacac gatgtctgta cttacgtgga atttggaaca caacgcacac      2400
     actgggtgaa attcacccgc cgagaaactt tcgatatttc ccatttaacg aattttggga      2460
     cactgaagct gaaactcggt gtgcgcgtag tggtggggca taagtttttt cccccccact      2520
     cccaagcccc aacctccttc catttttaaa tgccgaaccg ccgaaaaatc gcgccgggtg      2580
     aaattcaccc agtgtgtgcg ctgagggtta agccgaatgg tgacatcagg atttgtggtg      2640
     actagaaagt cacacttaat aaatctttag ttgatgtttg ttatccacta cctaggattg      2700
     atgacatttt tgcggcgtta gaaggagtca tactttttac aaaacttgat ttgtgtaacg      2760
     cttataatca gttgtgtttg gatgaacaat ctcagcttat ttgtacctgg agtacacaca      2820
     ttggattatt taaagttaaa cgtttacctt ttggtattaa aacagcagca gccatttttc      2880
     aaaaaactat ggacagttta tttcaaggaa ttcgaggagt tgttgtttac caagatgata      2940
     taaccatcac tggaagaaat cttcaagaac atataacaag tcttaaaata gttttaaata      3000
     aacttaaaac tgtagggttg aaagtaaaaa atgaaaaatg tgaatttttt aaaccaaaaa      3060
     tatgttttct tggattcact attgatcaga atgggctaag caaaaacaat gatggaattt      3120
     ctagcatttc cttggcacca actccaaaga atgtgtccga acttagagct tttataggta      3180
     tggtgaatta ttattctaaa tttatcaatc attttgcaca gaaaatgagt ccattgtatg      3240
     cattacttcg caaggatata aaattcttat ggacagagga atctcaaaat gcatatgatg      3300
     tcataaaaaa ggaagtcact tctgaacaag ttttagttca ttttaatcct gacttaccta      3360
     ttgttttaac aactgatgct agcaatgatg cagtttcagg agtgttatca cacaaagtag      3420
     gtgaagatct caaaccaata gcttttgttt cgagagcgct atcaaaatgt gaaagtaaat      3480
     acagcactat tgaaaaagaa gcactggcta ttatttattg tgttgttaaa ctcaaacaat      3540
     atttgttagg aaacaaattt attttaagaa ctgatcacaa gccacttttg ggaatttttg      3600
     atgaaacaaa aagtttacca ctaatggcgt cagcacgtat gcaaagatgg gcagtaattt      3660
     tgtctggttt cgcatattca gtagagtaca taaaaggatc tttgaatgaa gcagatggac      3720
     tgtcaagaat gccacagttt aaggtcggaa ttgaaaatga agaatacaat tttatcaatt      3780
     tcattcaaag tgataacata tttaaattat catttaaaaa tatatctcaa gagacaagac      3840
     gtgatccaat attagcaaag gtttgtgaag ctattaaaga aggatcaatc tcaagactca      3900
     agggcagtga attttcttgt tttgttcaaa aatcgaatga actttcggtt gaatatgact      3960
     gcattttatg gggtcataga gtagtagttc cttccaaact tagaaaaaaa aatactccaa      4020
     gaatttcaca gctcacattt ggaaatagta aagacaaaaa tgctagcacg gtcttatgta      4080
     tggtggccaa atttagataa agaattagag aatttaatta aagaatgtat tccttgtcaa      4140
     gaactacagc caagtcctga aaaaagttcc ttaataccat ggaagtcaaa tggaaaaata      4200
     tggagtagaa ttcatataga ttttgcagga ccaattaaaa attttcattt gctaatagtt      4260
     attgattctt attctaaatg ggttgaagta tttagaacaa aagacattac ttcaagtttt      4320
     actataaaaa aacttcgtta actgttttgt agatacggct taaccgatgt attagtaagc      4380
     gacaatggtc gacagtttac ttcagatgag tttaaaaatt ttatgaaaaa caatggagta      4440
     aaacatatct taactgcgcc agggcatcct gcaagcaatg gtcaagcaga aaattttgta      4500
     aaaacaataa agaaatcttt atatgctagt attaaatcta atgaaaattt taactttgat      4560
     gttatattag gtagattttt gatcgattac agaaacacaa ttcattgcac tacaggagaa      4620
     acacctgcaa agttattttt tggtagaaac ttgaaaacaa gattttcatt tttaaaacca      4680
     ccagcagttt tgaatcgcat taatgcaaaa caagaggaca gtgttacaga ttttaaaggc      4740
     agaagagaga ctaattttaa gacaggacag aatatcatgg tcagagacta cagaaaccct      4800
     aacaaggcag gttggactca agcgattgta aaagaacaat taggtcctcg atcatattgt      4860
     tgtatcttat ctcacggtca tttagatcaa atacgaaatc aagaaacaac aaattcggaa      4920
     cgggaaacct gtgtcgtgga tagctcttct aaaacagaca aagatacaaa taatatagac      4980
     ttttctaaaa aaaacaaaga tacaaataat ataagttctg aaatcactag aagagagtta      5040
     agaccacgag aggcaaaaaa agtagttaag cagaataaaa agaaaattga attaattgat      5100
     taaaattaag tacattgtaa aaatatatat tttatacatt gtaaataata attataataa      5160
     ctatacaact aaaaatataa ctaaaattaa tgcatacaat tgttactata gaaatataaa      5220
     agaaaaaagt gaagaaaagc ataattgaat tatagctatc atattattac aatgtacaat      5280
     tgttaataca atgttaataa tgttaataat agaaaacaaa cctatgaagg ggcg            5334
//
ID   Gypsy-13_DFi-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DFi_;
KW   Gypsy-13_DFi-I; Gypsy-13_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-187
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 914-914 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 187 BP; 68 A; 28 C; 29 G; 62 T; 0 other;
     tgttggatat tcgtaccact taagttccaa gatcaatacg tacataagat tatattatta        60
     ttatagaatg gttaacacaa atgttagata cttaattttg gattgtaagc tttgacatat       120
     aataaaacac acttgaactg agatcgtctt cggaaacgca cgtattattc ggtgtaaata       180
     cacaaca                                                                 187
//
ID   Gypsy-13_DMel-I repbase;    DNA;    INV; 7468 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7468
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1046-1046 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1264..2421
FT                 /product="Gypsy-13_DMel-I_1p"
FT                 /translation="MSKIAKVKKLIPATRSRTRLSASLSDVREDQVALQSI
FT                 VRPPSSDPPSTMNTSPGTSQFSPPLPLISPQDICQSLKIPDGIRYLIPYXG
FT                 NPATLNDFINNVEEILLLIRGTDKTPYGQFLLRAIRNKIEGKANELLISSG
FT                 IGLNWDDIRETLIGKFADKRSEETLNFELHGLVHKRLPLQEFYERILDIRA
FT                 TYNRIIENTEIERAALKFKKESFEKTCLYTFIHGIKGPLGATVRTFKPRSL
FT                 QEAFDVAIKERDIFMRENWSKQTPSSRPSSSNYNGREFRRYDRPRDERFNK
FT                 KPDFDRNFRSRDQTLNHSRFRDNDRSYTKMKAIMPKEEDRKHYDKNNQYPR
FT                 NYGGSGPQRQTPLNHIETGNEQELHNIDDGNFQLKASSDRRDI"
FT   CDS           2753..5623
FT                 /product="Gypsy-13_DMel-I_2p"
FT                 /translation="MTLFQKVKQKAELFNIEEASKKLVMLPVTIQEGTFLC
FT                 EDQKISENMFITGGLYTALNYYSCMEVTNYSXKQENLYLESPIEVNHFNTD
FT                 EFFIINDIKDHGTVCSDKEKEGNSKLRLEHLNTEERNVFKRLCKQFPNIFY
FT                 KEGDKLTFTNIVKHNITTTDEVPVHKRPFRYSPSEKTEITDQINKLLEQDI
FT                 IKHSHSPWSAPVFLVPKKLDASNKRKWRLVVDFRQLNEKTIKDRYPMPHIN
FT                 EILDKLGRAQYFSALDLASGYHQIEVDPKDRSKTAFSAVGGHFEFIRMPFG
FT                 LSNAPATFQRVMDNVLADFNGKFCLIYLDDIIVFSTSLGEHIDHLNAIFKK
FT                 LTQANLKLQPDKSEFLKKEIEYLGHIVTEKGVKPNPKKIETIKAFPVPKTR
FT                 KEIKSFLGLLGYYRRFIRDFARVTKPLTQQLKGKADVTIDEQYIKTFDFCK
FT                 TLLCNDPILQYPDFTKPFILTTDASNVAIGAVLSQGAIGSDRPIAYASRTL
FT                 SESETHYATIKKELLAIVWSVKYFRPYLFGNRFLLVTDHKPLVWLKNLKEP
FT                 NSMLVRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVELNTNEARQITANT
FT                 EILNSNRPINEFAIQIILKNAECANDSVETPFKNKIRRIISRPLFDDKTMI
FT                 DILKAVLRSNKTHAIYTTDTIFESVQKIYATFFAPNKSYKIIRCTTFLKEL
FT                 RTPEEQIEYISDYHIKNNHRGIDETFSHIKRQIFCPCLREKISQLINKCDI
FT                 CQTLKYDRQPQKLIFQVTETPNKPLDIVHIDLYSINKKIILTIIDKFSKFA
FT                 EGYTIPSRDSINITKHMMFFFKTHGIPKTIVCDQGPEFAGILFKELCNQYG
FT                 INLHITSFQQSSSNAPVERLHSSLTEIYRIIFEKKKTLRLNLDHDLILAET
FT                 FVTYNNAIHSTTKFTPYEVFTGRTHIFEQSYKAVSQQDYLRELDSFRTQLY
FT                 TE"
FT   CDS           5897..7465
FT                 /product="Gypsy-13_DMel-I_3p"
FT                 /translation="MIAAQLLHVQHVKDNTPLAEIILGEARIIKTFNSVAH
FT                 IIELNDLTNNLNKLESSXKNLRDEDSNDSITPLQRKINQAKEKIRSLTPNR
FT                 REKRGLIDGLGNVIKKVTGNMDAEDASTIDTKFNQIFENEKTINKNLWQQI
FT                 ANNNDIIINFNNISKHFYKEQEKIEEYINNFKNSISKDLVVEDKRIRTLQI
FT                 LNIINNNIDVLQNHIHDIAESILLAKFNIIPNFILPIDELRDIAQIFKLQN
FT                 FSINSEEHIYRLLNIEIESKQTRIIFHIKIPIFDKYTYTLSHLIKLPINGT
FT                 KFLTLPKFILYDVKFNYMISFQEKCPKVHGTYICDPRTAENNMDNKECIKQ
FT                 VIQGMNPICEAKIINTDETVVEPEQQWIVIISKNQTSAEPSCAEPFLIEGT
FT                 TIINHINCSIFIEGTKYDDSELFYEERIKLSLPETKNISINTTMEDLSLNK
FT                 IILHLQENKTKILQVKESTIDLRFLTYASSVILVIFILYALVVKRNITYLP
FT                 NHTPSVNYVSSIPSLWPSLHSRGGGVG"
XX
SQ   Sequence 7468 BP; 2915 A; 1433 C; 1242 G; 1865 T; 13 other;
     ggcgcagtcg gaaactggac taatgcaact cccttttatc ataattgtat tcaagtgagt        60
     agagtgagag aacaaaatgc caccaataca catacagact acaaaatacc aatacacatt       120
     caagttacac aaaataaata aaattatcaa ataaattgtt caaaagaata caccgcaaga       180
     attaatatga tgcaataata tactacagta aaaatacatg agagattttt ttcaaataaa       240
     caaagagtgt ctgaccatgt tgaagttcaa atagaacaaa ttcattgatc agaatatata       300
     aaaaaagagt aaggaagagt gtctgaccat gtaggagttc aaatagaaca aatacattgg       360
     tcggaatata taaaaaaaac aaagaagacg tctgccaatg tatgagttca aatagaacaa       420
     acacattggt cagaatatat caaaatacac aagtgtctgg atgcataaag ttcaaataga       480
     acaattatag tgaccagaat aaatctttaa gtgtaaaatc tttatgaaat gatttaaatc       540
     aagaagataa agaatgaaca tttacgttgt acatcaaaat atgttacaag tgtgtggttg       600
     aagctcgttg attggagcat aataagcgaa ccgtgtcaaa cctgtgtgaa agttggcctc       660
     gacctgttgg ctgcatgtaa attgagttcg atataactaa attgcgggtt gccgacggtc       720
     gagtacaggt tcgaaagcag ctcagcggct acgatacact ggcgtgtcga gcggttgggt       780
     tgatgttcga acaaattgtg ctcgttgttt kwkcaacaac aattgacacc cgtgacgtgg       840
     ttgactccca atcattacaa actgattcaa ccgacattgc ttgttcaggg cgaatagcca       900
     atgcgacaac aagtcagcgg tcaaacttaa ataataaaac aaagaaaatt tttgctccmc       960
     ctctctaata catattgata tacataaaca tacaaattat agacatatat taatgcatct      1020
     ataattacag ttctacacga ggactattaa tccatcacca cgacgaatac actcaacaat      1080
     caacaattaa ttaagtacac atagacacat acaattaatt aagtatacwt aatcacacac      1140
     acaacaatta gatacgcaaa atcacaccca atattacaca catatattta agacttaaac      1200
     actcgtaaac ataacataca aacaacacta tattaaagat tamgatttct ctaaaggaag      1260
     taaatgtcta agattgcaaa agttaaaaag ctcattcctg caactagaag taggactcgt      1320
     ttgagtgcaa gtttatcaga cgttagggaa gatcaggttg ccttacaatc tattgttaga      1380
     cctccctcta gtgacccacc aagcacaatg aatacttcac cggggacaag tcagttttct      1440
     ccaccactac ctctgatttc ccctcaagac atttgccaat ccctaaaaat tccggatggt      1500
     attcgttacc ttatccctta tgawgggaat ccagctaccc taaatgattt tataaacaat      1560
     gtcgaagaaa tcctccttct cataagaggc acggataaaa ctccgtatgg tcagtttttg      1620
     ttgagggcaa taagaaacaa gatagaggga aaagcgaatg aattattaat atcatcaggc      1680
     ataggattaa actgggatga catcagagaa accttaatag ggaaattcgc tgacaaaaga      1740
     agtgaagaaa ctttaaattt cgaattacac ggactggttc acaagaggtt gccactacag      1800
     gaattttatg aacgaattct agatatcaga gctacataca atagaatcat tgaaaacaca      1860
     gaaatagaaa gggcagccct aaaatttaaa aaggaatcgt ttgagaagac ttgcttatac      1920
     acatttatac acggcattaa aggtccactt ggggctactg tcagaacttt taaacctaga      1980
     agtctacagg aagccttcga tgtggctatt aaggaaaggg atatcttcat gagagaaaat      2040
     tggtctaaac aaacaccgag ttcaagacca agtagttcca attataatgg gagagaattt      2100
     cgtagatacg acagacctcg agacgagaga tttaataaga aaccagactt tgatagaaac      2160
     ttcagatcta gggatcaaac attaaatcac tcaagattca gagacaacga cagaagttat      2220
     accaaaatga aggctataat gccaaaagaa gaggacagga aacactatga caaaaacaat      2280
     caatacccac gaaattacgg aggctcggga ccacaaagac aaacccccct taaccacata      2340
     gaaaccggaa atgaacaaga actacacaat attgatgacg gaaattttca gttaaaagcc      2400
     tcgtcggaca gacgggatat ttagaaaaat tttaagttgg aggttcctta ctttatatat      2460
     taattaactt cggtcaaaat agaccccaaa ttccttgtgg acacgggtgc cacttcttca      2520
     ttcattaatc cagaacttat tgaggaacat aaccaacaaa cgctagaaac acctatttta      2580
     attaccacag ccctaggctc tcaggaagta aacagaatgc tagagtcgag ttattcccat      2640
     tattactctt cgaattccac aactattttg acggtcttat agggatgaac acataaatat      2700
     ttcgggagtg ataaacatac caagaaaaac gctaactaca cccaatttta ctatgacatt      2760
     atttcaaaaa gtaaaacaaa aagcagaatt gttcaatata gaagaagcat ccaagaaatt      2820
     ggtaatgcta cccgttacaa ttcaagaagg tacattttta tgcgaagacc aaaagatttc      2880
     agaaaacatg tttattaccg gtggtctata cacggccctc aactattata gttgcatgga      2940
     agtgacaaac tactcggaka agcaagaaaa cttataccta gaatcaccaa tagaagtaaa      3000
     ccattttaac acggacgaat tttttataat aaacgacatt aaagatcatg gcacggtatg      3060
     ttcggacaag gaaaaagaag gaaacagtaa gctaagacta gaacacttaa acacagaaga      3120
     aagaaatgta ttcaagaggt tatgcaaaca attcccaaat atcttttaca aggaaggaga      3180
     caaattaacc ttcaccaata tagttaagca taatattact accactgacg aagtcccggt      3240
     acacaagaga cccttcagat acagtccttc agaaaagaca gaaataaccg accaaattaa      3300
     caaactscta gagcaagaca taattaagca cagtcattca ccttggagtg ctccggtttt      3360
     tctggtcccc aagaaattgg acgcctcaaa taagagaaag tggagactgg ttgtagattt      3420
     cagacaacta aatgaaaaga caatcaaaga cagataccca atgccacaca tcaacgaaat      3480
     cctagacaaa ctaggcagag ctcagtattt ttcggcccta gatctggcca gtggttacca      3540
     ccaaattgaa gtagacccta aagatagatc taagacagcg ttctccgcag taggcggaca      3600
     cttcgaattt atcagaatgc cttttggctt atctaacgca cccgcaactt ttcaaagggt      3660
     gatggataat gtcttggccg atttcaacgg caaattttgc ttaatttatc tagacgatat      3720
     aatagtattc tcaacttcct taggggaaca catcgaccac ctaaatgcta ttttcaagaa      3780
     gctcactcag gcaaatctaa aacttcaacc cgataagtcg gaatttctaa aaaaagaaat      3840
     agaatacctt ggtcatatag taaccgagaa gggcgtcaag ccaaacccaa agaaaattga      3900
     aactataaaa gccttccctg tacccaagac tagaaaagaa attaaatcat tcttgggatt      3960
     gttaggctat tatagaagat ttatcagaga tttcgccagg gtcactaaac ctttaaccca      4020
     acaattaaaa gggaaggctg acgtgaccat tgacgagcag tatatcaaaa cgtttgattt      4080
     ttgcaagaca ctcttatgta atgaccccat actgcagtac cccgacttca ctaagccgtt      4140
     catcttaact accgatgcta gtaacgtagc aataggggca gtactatctc aaggagctat      4200
     aggaagcgac agaccaatag cttatgctag tagaacatta tcagagtccg aaacgcatta      4260
     tgccactatt aaaaaagaac tactggcaat agtgtggtca gtaaaatatt ttagaccata      4320
     cttattcgga aatagatttc tactggtcac tgaccacaag cctttagttt ggttaaaaaa      4380
     ccttaaagaa cctaattcta tgctagtgag atggaaactc caactcctag aatatgactg      4440
     tgaagttata tataagaaag gttctcaaaa cgtggtggca gatgcattaa gtagaattgt      4500
     cgtggaactc aacactaacg aagctagaca gattactgcc aatacagaaa ttttaaattc      4560
     taacagacct ataaatgaat ttgcaatcca aattatatta aagaatgcag agtgtgcaaa      4620
     cgactcggtg gaaacacctt ttaaaaataa aatcagaaga attatttcta ggcccttgtt      4680
     tgatgacaag acaatgatag acatattaaa ggcagtgtta agatcaaaca agacacatgc      4740
     aatctacacc actgatacaa ttttcgaatc agtgcaaaaa atttatgcaa catttttcgc      4800
     tccaaataaa tcctacaaaa ttataagatg cacaaccttt ctaaaagaac tcagaactcc      4860
     ggaagaacag atagagtaca tatccgacta tcatatcaag aacaatcata gaggtataga      4920
     cgaaactttt agtcacatta agcgacagat tttttgccct tgtttaagag aaaagatatc      4980
     tcagcttata aacaaatgtg acatttgtca aaccctcaag tatgatagac agccccaaaa      5040
     actaatattt caagtaacag aaactcccaa taaacctcta gacattgtgc acatagatct      5100
     atactcgatt aacaagaaaa tcatcttaac cataatagac aaattttcaa aattcgcgga      5160
     gggttacact attccatctc gggattccat taacatcact aaacatatga tgtttttctt      5220
     caaaacccat ggaattccta agacaatagt atgcgaccaa ggtcccgaat ttgcaggaat      5280
     tctttttaaa gaactctgca atcaatacgg gataaattta catataacat ctttccaaca      5340
     atcaagtagc aacgccccag tagagagatt acactcatct ctaactgaaa tttataggat      5400
     cattttcgaa aagaagaaga cattaagact caacttagac catgacctaa tattagcaga      5460
     aacatttgta acatacaaca acgccataca ctcgactacc aagtttaccc catacgaagt      5520
     ctttacagga cgaacacaca tattcgaaca atcctacaag gcagttagcc aacaagacta      5580
     cctgagggaa ctggacagtt ttaggaccca gttatatact gaataaaaga agaccttgaa      5640
     acgcaaaaac taaacaaaat tcaaaaatta aatgaaggwa gaacactacc aatagccgta      5700
     caggagggag atactatttt cagagaggaa aatagaagaa ataagttaac tcccagattc      5760
     actaagcaca magtagctat tgacaacggg gtaacattca caacaaacaa gaggcagaaa      5820
     atacataaat caaaaattaa aaaaagaact agacgaaata gtaattaaaa tataataata      5880
     tcattacaga ttacacatga tagcagctca actgcttcat gttcagcatg ttaaagacaa      5940
     taccccccta gcagagatca tccttggaga agcaaggatc attaaaacat ttaattctgt      6000
     ggcacacata atagagctaa acgatttgac aaacaacctc aacaaattag aatcaagcst      6060
     aaaaaactta cgagacgaag attcaaacga ttcaataacc ccgttacaaa gaaaaataaa      6120
     tcaagctaag gaaaaaatac gctccttaac cccgaaccga agggaaaaga gaggtttaat      6180
     agacggatta ggtaatgtga ttaaaaaggt aaccgggaac atggacgcag aggatgcatc      6240
     cacaattgac accaagttta accaaatatt tgagaacgaa aagaccataa acaaaaatct      6300
     ttggcaacag atagcmaaca acaatgatat aatcataaat tttaataaca tttctaaaca      6360
     cttttataag gaacaggaaa agattgaaga atatattaat aactttaaga atagcatttc      6420
     taaggattta gtagtagaag acaaaagaat tagaacctta caaatattaa atatcataaa      6480
     taacaatata gacgttttgc agaaccatat acacgatata gcagaaagta tactattggc      6540
     caaattcaat ataattccaa actttatctt accaattgac gagctaagag atattgcaca      6600
     gattttcaaa cttcaaaatt tctcaatcaa ttcagaagag catatctaca gactactcaa      6660
     catagagata gaatccaaac aaactagaat tatatttcac attaagattc caatatttga      6720
     taaatacact tatacacttt cacatttaat taagttacca attaatggca caaagtttct      6780
     cactctacct aaatttatat tatatgatgt aaaatttaat tatatgataa gttttcaaga      6840
     aaaatgccct aaggtacacg gcacatacat ctgcgacccc agaactgcgg agaacaacat      6900
     ggacaacaaa gaatgtataa aacaagtaat acaaggaatg aaccctattt gcgaggcaaa      6960
     aattatcaac acagacgaga cagtagtgga accggagcaa caatggatcg ttattatcag      7020
     caaaaaccaa acaagtgctg aaccaagttg tgctgaacca ttcctcattg aaggaacgac      7080
     aataataaac catataaact gttccatatt tatagaagga accaaatacg atgacagcga      7140
     gttgttctac gaagaaagga ttaaattatc actacctgaa acgaagaaca tatcaataaa      7200
     tacaacaatg gaggatctaa gcctgaacaa aataatactt caccttcagg aaaataaaac      7260
     caaaatactc caagtcaagg aatccacgat tgatcttcga ttcctgacct acgcatcgag      7320
     tgtcatcctg gtcatcttta tactctacgc cttagtagta aaaagaaaca ttacttacct      7380
     acccaaccat actccctcgg tcaactacgt ttcgtccatt ccttcgttat ggccgtcact      7440
     tcattctagg gggggaggag tggggggg                                         7468
//
ID   Gypsy-13_DMel-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-441
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1025-1025 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 441 BP; 129 A; 119 C; 69 G; 121 T; 3 other;
     agttaccaca tcagcagtac ctacatctac tcccccgccc ccaaaacctc cacgccaaaa        60
     ctgttagttc gttgtcctct cttcttacca catcagcagt ctacgtcttc tccgccgtct       120
     cccaaaaacc ctcacaccag agctgctagt tcgtcgcact ctcatgttgc aacattgtcg       180
     gcggaaacag ctcagcaagt cggagacatt ccccaaatct gatgggtcag cagattcgcg       240
     atcaccaagc agagtataca tatattatca tgttcctata ttagagtcag tcttaagtta       300
     acttckgwts gaagagcatt ctaaatattg gccttataat aaatttctta aataattaaa       360
     ttacccaacg gagtattatt gggagacctg gaaaatacct tatcaacagc aaactggtat       420
     cgctactatc atattgtaac t                                                 441
//
ID   Gypsy-13_DMo-I repbase;    DNA;    INV; 6429 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6429
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6429 BP; 2064 A; 1453 C; 1487 G; 1425 T; 0 other;
     ggcgcccaac tacggatctc cgatcaccca agtggcaaac ggttctcgcg tcgcgaaacc        60
     gggagttata aaaaataaaa cgaacaaaac taaaagaaat tgcaagtgaa gtgcaaagaa       120
     acagcggctg gctgtccaaa actaccaaaa gataacaaat ccaagttcac cagatccgca       180
     ggagctctct gggcagcggt gacgaaaaac ataaggagga tcccaaggaa agcaacaaat       240
     ccgaggacaa ctaccaggac ggacaaaaat agtatcatgt aagtgagttt cttctaggga       300
     aagaccaaaa gatcagatta aaacaaaaaa aagagagaaa aatagataaa attaaacgaa       360
     ttgcgtgtgt aaagtttgtt ttgttgtctc cgctcgcgtt gcatgtttaa ttgtgtctct       420
     actcgcgcta tgccccgtgg cgactaacag tgtgtcaacc tatgagttat agaagaaata       480
     gtaacgacag tgacgacagt gtactttccg ctctgctcca aaaattcggt cgagcgcagg       540
     ctattagtac agaaatggac gaggaccagt tacaagcaat tatccagact gctttgtcag       600
     tccaggcagc agaatatgtt aggagagagg cggaccttaa agccgaattc aaacggcaaa       660
     ttgacgaact gtcagggagt gtaagtagag caactatttc tgtaccagtg ataaaggtgt       720
     acgaggacgc acaaatcatt ccgggtattc gctgtgatga gcctttagac gcgataaaag       780
     tttgccggaa ttcaccggct ccctagacgc ctatgtcgct tggcgacaag cagcgcacaa       840
     ttcatacaag atattcaaaa actatgacgg gagctcacga cactaccaag ccatggtcat       900
     tctaaggaat aagataaggg gctcggccga tgccgttctc gcgtcattca atacagcact       960
     caatttcgag gctatcatcg cacgacttga ttttacctac gctgataaga aacccatcca      1020
     cattatagag caggaaatgg gtacccttag acagggcagc atgtccactc tagagtacta      1080
     tgatgaggta gagaaaaaac tcaccttact aactaacaaa acgaacatga cgtacgacca      1140
     taatctggcc aaggggatgt gcgagaagtt tagaggcgat gccttaagag tctttatctc      1200
     cggactaaga cgcaacttga cggacgtgtt gtttgcagcg cacccgcctg atttgccatc      1260
     cgctttagct ttggctcagg aggtggaggc aaaccacgat cggtacaact ttgccacaaa      1320
     cttcgccaga ggattagaag aaaggtctaa tagaggcgaa atgaggaatc aaagtcgtca      1380
     gaatcccaac cagcaagagc agagacctaa cgctcaagct ggacaaggga ggagccccgc      1440
     ctttaagaag caaaggggtc agagaaatgc tgaggctgct caggttgcgg ccactactaa      1500
     taataacaga tcagaaccaa tggacgttga tccatcaatg tcaaaatata ggcagcagac      1560
     cgcctatcag aaatctcagg agtccgcaag agttaaccca caacagggac agacgaacaa      1620
     gcgatcgaat acgtccgatc gtatgacggg ccagagacgc cagaggatag atcacatctc      1680
     taccaatggt gcagacaagg aagggtcata taacgtggtg gctagcaaag aagtcgagga      1740
     aatagatact gacagcgagt gtgagggcga cagcctcaac tttctagata gcggcctgaa      1800
     ttttttaggg cgaagtccct gctgccgtac ttacggcgac gaatagcagg gagaaacgtt      1860
     aggttgttaa ttgacacggg tgcatcaaaa aattacatca agccgctaac gcagctggat      1920
     ggtgtagtcc cggtcgagac gaagtttgtc gtgcagtcta ttcacggctc caacaacatt      1980
     tccaaaaagt gcgcgttgcc aatgtttgga cagacagcga ccttttttat actggacaac      2040
     ctttctacat ttgacgggat aataggcctt gacctattaa agcaggtcaa cgccgccata      2100
     agcctgaagg aaaacaagct tttaatccag ggtggatcgg aaacgataca ttaccaggaa      2160
     tgcttgaatg taaaccacac caaggttatc gaccttgatg taccctttgc agtgaggacc      2220
     gagttccttc aaatgctcaa aaggaacgat aaggcatttg ctgaccctaa cgagtcactg      2280
     ccgtacaata cttccgtcgt tgctaaaata cgaacaactg acgagaagga aatctattca      2340
     aagctatacc catacccgcg aggtgtagaa gattttgttg ccacagaaat aaatgaactg      2400
     ttgaaaaacg gtatcataag aaagtcgcgg tccccataca ataacccgat ttgggtggtg      2460
     gacaaaaaag gcaccgacag taatggcaac aagaaaaaac gtttagtgat cgattttagg      2520
     aaactaaacc agaaaactat tgctgacaga tatccgatgc caagcataac aatgattctg      2580
     gcaaatctgg gtaaagcaaa gtttttcaca acgctcgacc ttaagtctgg ataccaccaa      2640
     ataactttgg cggaggagga cagggagaag acggcgtttt cggtgaacgg gggaaaatac      2700
     gagttctgtc gactcccctt tggcctgaag aatgcgggca gcatttttca aagaaccatt      2760
     gacgatgtcc tccgtgaaca gattggcaaa acttgctatg tttatgtgga cgacgtcatc      2820
     atattctccg taagcgaaaa ggaccacgtc aaacacgttg agtgggtcct caagagtctg      2880
     cgcgacgcaa acatgaaagt ggccaaagaa aagtcccagt tttttaaaca cagcgtagag      2940
     tatctggggt ttattgtgac tagcaacggc gcaaggactg accctgaaaa ggtgaaagcc      3000
     attcagaact acgtcgagcc agagtcattg tttgcagtaa ggtcgtttct gggtttagcc      3060
     agctactacc gctgcttcat caaagatttc gccgcaatag cgaaacctct ctccgacatc      3120
     ctgaaagggg agaacggttc ggtgagcaag tacaggtcaa aaagagtgaa agtcaaactg      3180
     aatgaaaatc agaggcatgc attcgagagg ttgaggaaca ttttagcatc agaaaacgtc      3240
     atgctaatgt atccagacta caaaaagcct tttgatctga ctacagacgc atcggcatat      3300
     ggaatcgggg cagttttatc tcagaacggg agaccaattt ccatgatttc tcgaacgctg      3360
     aaagatagtg aggcgaatta cgctaccaac gagcgtgagt tactagctat cgtgtgggcc      3420
     ttggccaagt ttcggcacta tctttatggg gtcaaagaca taaacatttt cacagatcac      3480
     cagccactta cgttcgcggt gtctgaggga aacccaaacg caaaaatcaa acgttggaaa      3540
     gcacgcattg atgagacagg ggcgaacatg ttctacaaac ccggtaagga gaatcacgta      3600
     gctgacgcct tatcgcggca aaacgtgaac gcactcgaga gtgctgaacc agaatcagat      3660
     gccgctacaa tgcatagcga gacttcactg acctacacca tcgagactac tgaaaagccg      3720
     gtgaattgct tcagaaacca gatcatattg gaagagtctc agttacctct gaacagaaat      3780
     tacgtcatgt ttagcgaaaa aacacgccat gtgataaatt tcactgatag gaccaccttg      3840
     attgatgtag ttaaaccgat agttaaccca aatgtggtga acgcaatcca ttgcgagctt      3900
     ccaatcctag caagattgca agacgaactt gttagaagct tcccaaccac aaaattttag      3960
     cattgcaagc acctcgtcac agatgttctg gatagcggag agagaaggga aatcctcacc      4020
     gccgaacaca atcgtgccca cagggctgta caagaaaaca taaaacaggt catgaccgac      4080
     tattattttc ccaaaatgac aaagttagca aaagaaatag tcctaaactg caaggtttgc      4140
     tcaaaagcaa aatatgacag acacccgaag aagcaggagc tcggacgaac gccgatccct      4200
     tcacgagccg gagaaatgct tcacgtcgac atattctcca cagaccgcaa actgtttctg      4260
     acttgcatcg acaaatactc taagtttgct atagttcacc atatagtgtc acgtactata      4320
     gaggacgtga tacccccgtt actatcgata ttgaacgttt ttccccagac caaacagata      4380
     tactgtgaca atgagccatc gcttaagtcg gaaacgatta cgtccctgct gctaaacaac      4440
     tttggcgtga acttagcaaa tgccccgccc ctacacagca cgtcgaacgg gcaagtcgag      4500
     cgttttcaca gtacacttat agagatagca agatgtctga agctacaaag agggataaac      4560
     agtacagtcg aactcatact acaggccgca attgaatata acaggtcaat acattccgtt      4620
     actcagaaga gaccaataga cgccttgtac gatgcctcga aagagaccca acataaggtt      4680
     acgaagagga tagagggagc acagcaagta cagaatgcca gacttaacca agacaggcag      4740
     aatagggtat ttgacgtggg cgaagaggtt ctggtcaaaa caaaccggag actaggcaac      4800
     aaactcacgc ccttatgtat cgaagaaaag attgaagcgg acttggggac cacagtcctc      4860
     attaagggga gggtagtcca caaggacaac ctccgctgag ttaataggtt tagctcgtag      4920
     gattaaggaa tatttgacaa gtgagaacta acgatttgct ttacgtttca ggttgtacgg      4980
     gacgatatta acattactag tgactgtgac ggcacgaatg acagactact cacactctga      5040
     ctacattcct atctcggacg gaaatgtact agtttgggac ggtaacgact ttttaagaca      5100
     tacgactaac ctttccgaat tcacgcgaat gattgacgag accactaaat taacggacat      5160
     gtttccgcaa tcccacatgc ggaagctttt ggaggtagac accgagcacg tacgagactt      5220
     gttgtccgct cttgaggtgc atcaccgcca tgctagaagc cttgacttcc tggggacggc      5280
     gcttaaagtc gttgcgggca cccccgacgc aaatgaccta gagaacatta gaatgacgga      5340
     ggcacagctg gttagttcca acaataggca gatagaaatt aattctaaaa cgcagataca      5400
     aataaacatg ctaaccgaca cagtaaataa aattctaaag attgctaaaa ataaacaaac      5460
     agacaccttg catttataca tgactttgct cacaagaaac agaattctca ttaatgaaat      5520
     cggtaatctc atgttaacga ttaccctagc aaaatccaat atcattaatc cgaacatttt      5580
     agaccatgct gatcttaagt ctattcttat gaatgaactc acagggacga ccataactga      5640
     tttgttagaa gtatctagta ttaaggtttt tcaatcaacg aatgtactta agattattat      5700
     aaaataccct agaataagtc agctatgcaa aaaaatcact atattccccg tcgtacacaa      5760
     taacacgatc cttcagctgt cagataacgt agtagcggaa tgcggaaagc agattctggc      5820
     actcacaaac tgcaagccaa cgaccacgac agtattctgc gagcgggcac tcagcgaaac      5880
     ttgcgcccaa ggtttgcact ctggaggcac ggcgcattgt gtgactcagc ccagccatct      5940
     ggaccccatc accgtggtcg acgatggagt catcatcata aacaaccgtc cagctattgt      6000
     ggcgttcgat gataaagccg agatcatctc atctggaact caacttgtta cgttcgacac      6060
     ctacgcgctg atcaacggaa cccgatacgt gaaccgcaac aacgtccaag aaagattccc      6120
     gggagttgca gcgtcaccct tattgaatat cacaggtcat agtgacatac taagccttcc      6180
     atacctccac cgtctaaatg aggaaaatct aggctacatc agagagatga gagacgatgc      6240
     tatgtccggc actaggtcca tgttggtgtt tggcatgggc gtcataacct gctctatgat      6300
     ttgcgggagc attgccctct atcagtacgt caagaaaagg cgatcttccc gacgctttgg      6360
     acaaatgatc gagcaggtgc agaaggctta taacgtgacc agggacggtc agtctttgga      6420
     ggggggagt                                                              6429
//
ID   Gypsy-13_DMo-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-490
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 490 BP; 134 A; 127 C; 124 G; 105 T; 0 other;
     agttaactgt gagcgcccag cgaccccaaa atggaaagag cattctcacg gtgctggggt        60
     cgcagcgact gaatcagcag ttacgccagt cagcaagaat gtccaaaact cgggtgtcaa       120
     gtgcggctac gccagcgatc agcgcagtaa agtcagtgcc ccgcaacatt cttgcataac       180
     atccgccgag taacataaca ctctgcatga ggcgctaacg ctgcactttg ccggtgcggc       240
     tgccaacaac agcggcggca gcgacaccgc ggccagcgac aatgtggcta acgacagcga       300
     cagcgctgcc gacggcagcg gcggcgtcgc caatgaccat agcttagtta ttaagaattt       360
     atgctttgta gatttagttt gtaatcagtc atattgaacg gcggacgcct ttaataaatg       420
     tacttgacaa atctcaccgg tactcgtggt tttaatcaat tcgaaacgag tgactacatc       480
     taagataatt                                                              490
//
ID   Gypsy-13_DRh-I repbase;    DNA;    INV; 7474 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DRh_;
KW   Gypsy-13_DRh-LTR; Gypsy-13_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-7474
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1575-1575 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4922-5398] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2866..5634
FT                 /product="Gypsy-13_DRh-I_3p"
FT                 /translation="MDATHPEFAKEALNALISEYFKIFEPLSPGEAVDTSV
FT                 RAEIRTSTSDPIYSKSYPYPTNMRGEVDRQIEELLRDGIIKPSKSPYNSPV
FT                 WVVPKKPKPNGEKQYRMVIDFKRLNAVTIADAYPIPDINSILASLGKAKYF
FT                 TTLDLTSGFHQIYMLESDTPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMI
FT                 DDVLREHIGKICYVYIDDIIVFSEDYDSHWKNLRAVFDKLEKAKLQVNLEK
FT                 TNFLSTHVEFLGYVVTGNGIKADGKKVEGVTKMKPPTTVKELKSFLGMTSY
FT                 YRKFIKDYAKVAKPLTNLTRGEFARVKSSQSKKIPVELDEEALKAFNDLKT
FT                 LLSSSEVLAFPNFSKPFHLTTDASNYAIGAVLSQVDSGKDRPIAYISRSLS
FT                 QTEENYATNEKEMLAIVWALDNLRSYLYGAGSIKIYTDHQPLTFALGNRNF
FT                 NAKLKRWKARIEEYNCELIYKPGKSNIVADALSRVTTYVNHLGSGSEKASD
FT                 SDSIATIHSALQDASHFIPHVETPINAYRNQLIFCPDLSDYLCEHPQVGYV
FT                 RHSIPLVDHTPSTLIDSLTKYLKPSVINGIKIPDDYLQLLQTCCSQNFKLY
FT                 KIRITQRLVEDITDEEQICEIIEKEHRRAHRSPKEVRVQVLEKYYFTRMAS
FT                 IIRAQLSTCTICKLQKYDRHPNKPLLQPTPIPNYPCEILHIDVFTLEKKIY
FT                 LSCIDKFSKFAKLFPLQSKSAIHLRETLLDALHYFTAPRMIVSDNERGLLC
FT                 PTVLNYLRTLGIELYHTPTQKSEVNGQVERFHSTFMEIYRCLKGEYQTFKP
FT                 TELIPIVTDRYNNSVHSVTNKKPVDIFFNRTSRINYQGLSNFKQQTFEDIR
FT                 GLIEHKQTLTNNGRNKNRSDPISYEQGDTVYVANKQIKTKEKQRFKPEEVQ
FT                 DDRRVTIKTRSGKFFTNLT"
FT   CDS           6172..7470
FT                 /product="Gypsy-13_DRh-I_2p"
FT                 /translation="MQQLIDQIADEAKLITDQRIGALVDHYLQQASEGISR
FT                 MNSAPSRRQRSIDWLGSAWKWVAGSPDKSDWNAILKEEDSLARNNNQQIRI
FT                 NNKLFDSAQESIQKLNDVIGKVNAIEGDFHVTTAILHKAIIIADQVNEILR
FT                 ACQLGKTGVVNTNLLDHEEVDTILAEVDSLPYQNVVEAVEFSRPTILTNGT
FT                 TLLYILAMPKVVDRKYRLMKIYPTTSDGKQVVLKYTTLAMDSLETYALLGN
FT                 CISIGNTTVCREKDLFKLDEDSCIPRLLKGGQAECDYLRTNQETVELIDDG
FT                 TIFLTNFNGTVSTPIKKHHLEGSYIVQFDNETITIGDRNYSSYSSTHLMAM
FT                 PAVLTQIKTTGYELSLKYVHEFSMENLKRLSVMSNEILISFSVEIVIALSI
FT                 MTAVYLVWKKVTSTKGIPKLRDPPENLEARSTPEPAIKA"
XX
SQ   Sequence 7474 BP; 2614 A; 1646 C; 1456 G; 1757 T; 1 other;
     cttccttgtg gaagtggaag aaacccccca aaaaaaagaa aaggaaaaga aaaggggaaa        60
     aattcagaat acggtgttgt gtgtgtaaaa ttaagttaaa taaaatttaa aataaaaaaa       120
     atgttgcttt gtgtgaagaa aaaatattaa agtgaaaata ttggtgaaag ttacacagtt       180
     atccgctgcg gtgggggtgc tgccattcag agctgccact ccccacgggc gcaaaaaaat       240
     tgtgaataaa aaatatcggt aaacctgccg cggcgatttg tccacgcaca ctgttgcgcg       300
     gcatattcgc gggcacaaat aaaaaaccga gttaacaaaa aagaaggcaa tagtccgctg       360
     cggcgataag tccaccctaa tgggtagctt attcgcgagc gtaaaaaatt gcgataaatc       420
     ataataaaaa acaagataac cgctgcggca attaatttgc gagcggaaaa atatttaaat       480
     aaaaaaaata taataaaaaa atataataat agaatcagaa accaatgttt taaaattgtg       540
     tgtggcaatc tactggaaag gctaacgaat gtggaatgca ttcaaaaaag ctgcccagtg       600
     gattgtgtgg caaccgtacc ttagtaggcg aaacgccaaa acggacaaat acggaccacc       660
     gcgcctatta acacacttac caaataagag agaacacaca aataaaaaaa taaggaaaaa       720
     ataaaccgca cacacaccaa gaaatctgac caaaattttt tttaaacaaa aatgaaacga       780
     aaactaattc ttatttactt tcagagtaat aaccttgtaa gaagaaatcg aaataaacac       840
     attgaacaat cccaataaac acaaggcaaa gaggccaata aaaaggataa aagggtgagt       900
     gaaacaattt tctacacata tttccctatt agtaaaaata aagagaaaac aaaaaatata       960
     tttaaaaacc aatttcctac aaataagttt atcaataaaa ataaagaaaa acaaaaaata      1020
     tacttgagaa attaatttcc attttatttt attatctaat aaaaatcgaa aaaaactatt      1080
     taaacttaat tttgatacta atttaaatcc aaaaaataaa tctgttgcca accatcccac      1140
     ctcgacccga aatataagaa aaacctaaga ctccccatta aaccaatttc aacaaaaaca      1200
     aatacccttt tacgattaaa aatggaggaa atgaaggagg tactaaaccg actcgactcc      1260
     actattgcgg ccttaaccac acaaatggtg ggcatgaagg aggatgttag gaaaatgggg      1320
     gtagggtaaa tgttctcgaa accgacctcg agcggcgtaa cccagtagcg aatataccgc      1380
     taccactaac gcgcccacgt acagagtacg aactcaaaga atcttcggca gtgccggatt      1440
     gtgtaaagga acttctaacc ttcgaggggg attccgagaa gtatgtttct tggattaata      1500
     gggcccaatc gattattaac gactatgaag tcatccggga gaaacccttg tataggtcag      1560
     ttctcgttca aattaggcag aagattagag gcaacgccga tatggcgctt aatgcctata      1620
     acgtaaagga tgatgactgg gatgaagtta aaagggtatt agcgctacac tatgccgaca      1680
     aaagagatgt cggtacgttg gagtatgagc taacccaaat gacccagggc agtcagaaat      1740
     tagaggactt ctaccttaaa gtaaataacc atatctccct aatcatgaat aggataaaaa      1800
     gcatgggtta ctccacggag ataacaaacg ctttccttgc cggacaaagg gacaaggctc      1860
     tcaacgcctt tattagaggg ctaagtggcg acgcgtctag gcttttaata atccgtaagc      1920
     ctgcggacgt ccacgaagca tactccattt gtgtggagtt gcaaagaatg gaaccaagga      1980
     accctacacc aagagcgccc ttatttaaac aaacttttaa ccaaggttac caaggctata      2040
     gacagcctaa ttcaccgaga ttccctcaga cacatcaaat taactatagg ccacagatga      2100
     gtccaggtca caactatgct ccaagtggaa gcatacaggg cccaccaaga tttcaggggg      2160
     ctagaccagc tattaaatat gagccgaacc aatcaggtca gagctatagg tctaatttca      2220
     actcgcgtca aggagaggcc ggcggcatca aacgaagtcc gagcgctaac tccaatctaa      2280
     atcccttccg taaagcacaa aggctttaca acatacagtc cacttcattc tcgaaccccg      2340
     cctccaatga atactaccaa caacagtctg gtaacgaggc tgaggaacta tcggacccac      2400
     ctcaaggggt agaacattgt tctcccgtac aagaagtagc ctgcgttagc gatggggaac      2460
     caaattttat gaccgacgcc tctctagtat accatacata gaatatggga ctagaaatgg      2520
     ggctaagtta caattcctca tagacaccgg cgctaacaac aactttataa gccccaaaaa      2580
     ttccgccggt tccacaacat tatctacacc gttcattgtc caatctgctg ggggtgacat      2640
     taaaatcaca cacagtataa cgggaccatt ttttaaacca atagggaacg atacagttgt      2700
     cacttttttg tccttcccgg actcaaatca tttgacggca ttataggaga cgacacgtta      2760
     aaaacattaa aggcccttat cgacaggaaa aacgacctcc taacgatatc acccggtatt      2820
     aaaatacccc ttcttgcsaa aaaatctttg aatgtacacc tattaatgga tgcaacacat      2880
     cccgaattcg caaaagaagc cttaaacgcg cttatcagcg aatatttcaa aatttttgaa      2940
     ccactttcgc ccggagaggc cgtagacact agcgtcaggg ctgagattcg cacaagcacc      3000
     tcagacccta tatactcaaa gagctatccc taccctacca acatgagagg ggaagtggat      3060
     agacaaatag aggaactctt gcgggatggt attataaaac catcaaaaag tccatataac      3120
     tccccggtct gggtagttcc aaaaaaaccc aaaccgaacg gagaaaaaca ataccgcatg      3180
     gtcatcgatt tcaagcgttt gaacgctgtc acaatcgcag acgcctaccc gataccagat      3240
     ataaactcta ttctagctag tctggggaaa gctaaatact ttaccaccct cgatttaact      3300
     tcgggattcc atcaaattta tatgttggaa tccgacactc ctaaaacggc attttcaaca      3360
     ttaaatggga agtacgaatt tcttcgtctc ccgtttggac tgaaaaacgc ccctgcgatt      3420
     tttcaaagga tgatcgacga tgtattaagg gaacacattg gcaaaatatg ctacgtgtac      3480
     atcgacgaca taatagtttt tagtgaagac tatgatagcc attggaaaaa cctacgtgct      3540
     gtctttgaca aattggaaaa agccaaactc caggtaaatt tggaaaaaac aaatttccta      3600
     tcaacgcatg ttgaattcct aggatacgtg gtaactggaa acggcattaa agcagacgga      3660
     aaaaaggtcg agggtgtcac gaaaatgaaa ccacccacca ccgtcaaaga attaaagagt      3720
     ttccttggca tgacttccta ttatagaaaa ttcatcaagg actatgcaaa agtcgcaaaa      3780
     cccttaacaa atttaactcg aggggaattc gctagagtga agtcctcaca gtccaagaaa      3840
     attccagtcg aactcgatga agaagcgttg aaagccttca acgatttaaa aactctgctc      3900
     tcatcttcgg aagtattggc attcccaaac ttctctaaac catttcacct gaccacggat      3960
     gcgtcaaact acgcaatcgg ggcagtcctt tctcaagtgg actctggcaa agatcggccc      4020
     atagcgtata tctcccgatc tttgagtcag acagaggaaa actacgccac taatgaaaag      4080
     gaaatgctcg cgatagtatg ggccttagat aatcttcgct cttatctgta tggtgctgga      4140
     tctattaaga tttacaccga tcaccagcct ttaacatttg ctctgggtaa taggaatttt      4200
     aacgccaagt taaaacgctg gaaagcccgt attgaagaat ataattgtga attaatttat      4260
     aaacctggga aatcgaacat agtggccgat gctctgtcac gagtcacaac atatgtgaat      4320
     caccttggct ctggctctga gaaagcctcc gattccgatt cgattgctac aatccatagc      4380
     gctcttcaag acgcatctca ttttattcct cacgtagaaa ccccgattaa tgcctacaga      4440
     aatcaattaa ttttttgtcc agatttgtct gattatttgt gcgagcaccc acaagttgga      4500
     tatgtgcgcc attcaattcc gcttgttgac catacaccat caacccttat agactcactt      4560
     acaaaatact tgaaaccctc agtaattaat ggaattaaaa tcccagacga ttacttacaa      4620
     ctcctacaaa cctgttgctc ccagaatttc aaattatata aaattcgtat aacgcaacgc      4680
     ctggtagaag atatcacaga tgaagagcaa atttgcgaaa ttatcgagaa agaacatcgc      4740
     agagcccata gaagcccgaa agaggtccgc gttcaagtct tggaaaaata ttacttcacc      4800
     aggatggcga gtattattcg tgcacagctt tcgacctgca ccatttgtaa gctgcaaaaa      4860
     tacgacaggc accccaataa acccttgctg caaccaaccc ctatccccaa ttacccgtgt      4920
     gaaatacttc atatcgacgt tttcacatta gaaaagaaaa tttatctcag ttgcatcgat      4980
     aaattctcca agtttgccaa actttttccc ttgcaatcaa agtcagcaat tcatctccgc      5040
     gagacactat tagatgcact tcattatttc accgcaccta gaatgatagt gtcggacaac      5100
     gaaagaggtc ttctgtgccc aactgtcctg aattatttgc gaacactggg aattgagtta      5160
     taccatactc ctactcaaaa aagcgaggta aacggccagg tagaaagatt tcattctacc      5220
     ttcatggaaa tatatcgatg cttgaaaggc gaatatcaga cttttaaacc cacagaactt      5280
     atacctattg tcacagacag gtacaataac tctgtccact cggtgacgaa taaaaaaccc      5340
     gtagatattt ttttcaatcg tacctctaga ataaattacc agggtttgtc caatttcaaa      5400
     cagcaaactt ttgaagatat tcgaggtctc atagaacata aacaaacgct aaccaacaat      5460
     gggcgcaata aaaatagaag cgacccaatt tcttacgaac agggtgacac ggtatatgtc      5520
     gccaacaaac agattaaaac caaagaaaag cagcgattca agcctgaaga ggttcaggat      5580
     gaccgtaggg tcaccataaa aacaagatcg ggaaaatttt tcacaaatct cacttaaaaa      5640
     agtaatttgg gaactcctaa ggtaaaattt tactctcggt ttccagacca gggagggctg      5700
     ccaacagatt attttaactt tttacaactg tttcacaata aaagcataaa gggaaatgtg      5760
     tattaaatgt ttcactaact cataacctcc tccaaatacc aattaaatca attaaaaatt      5820
     ttttagtact taagaataaa aaatagttaa gcaacaccta gattaagatg aaaactatac      5880
     taaaggataa agggtaatga taaaacacaa gaaaacacga atacagacac ctagactaag      5940
     aaagaataac gacctaatta taagaatcta catttttcat ttaacctttt gctgacacta      6000
     taagcgcgtc cgcaatctat gtggcggcaa cccttcatat ttttaaatat gattcaccgg      6060
     tcgtcccctt acaacaaggc accgtctgga gaaccaatgg cgtcttcaaa ctggctcaca      6120
     tcataagttt agggcgcatg cagcagctca tcgaccagat agcagacgaa gcgaagttaa      6180
     tcacggacca acggatcggc gctttggttg accattacct gcagcaagct tcagaaggga      6240
     tctcgcgcat gaatagcgca ccgtcacgga ggcaacgctc gatcgactgg ctaggatcag      6300
     cttggaaatg ggtcgcggga tcaccggaca aatcagattg gaatgccatt ttgaaagaag      6360
     aagacagcct ggcaaggaac aacaaccaac aaatccggat caacaataag ctgtttgact      6420
     cagcacaaga atcaatccag aagctgaatg acgtgatagg gaaagtcaac gcaatagaag      6480
     gggatttcca cgtgacgaca gccattctcc acaaggcaat cataatagcg gaccaagtca      6540
     acgagatact gagagcctgc caactaggaa agactggagt ggtcaacaca aacctcttgg      6600
     accacgagga agtcgacacg attctggcag aggtggacag cctcccttat caaaacgtcg      6660
     tggaagcagt tgagttttcc cgacctacaa tcctcacaaa cgggactact ctcctgtata      6720
     tcctggcgat gcccaaagtg gtggacagga aatatcgatt gatgaagatt tacccaacga      6780
     catcggatgg caaacaagtt gtactaaagt acaccacact ggcaatggac agcctggaaa      6840
     catatgcgct actcggaaat tgcatatcga tcggtaacac aaccgtgtgc cgagaaaaag      6900
     acctattcaa attggatgag gatagttgca taccgagatt gctaaaagga ggccaagccg      6960
     aatgtgatta tctgaggacc aaccaggaaa cagtggaact catcgacgac gggacaatct      7020
     ttctaacaaa tttcaacgga acggtatcga ctccgatcaa gaaacaccac ttggagggtt      7080
     cgtacatcgt acaatttgac aacgaaacga ttacgattgg tgaccggaac tacagcagct      7140
     actcgtcaac acacctgatg gcaatgccag ccgtactaac ccaaataaaa accacgggtt      7200
     acgagctttc gttgaagtac gtccacgaat tcagcatgga aaacctgaaa agattgtcag      7260
     tcatgtccaa tgagattttg atatctttct cagtagaaat agtcatagct ctctccatca      7320
     tgacagcagt atacctcgtt tggaaaaaag taacgtcgac caaaggaatt cctaagctgc      7380
     gggacccgcc tgagaacctg gaagcgcgga gtacgccgga acctgcaatc aaggcctaaa      7440
     tgatctgtgg gacacagatc ttgtggtggg gagg                                  7474
//
ID   Gypsy-13_DRh-LTR repbase;    DNA;    INV; 840 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DRh_;
KW   Gypsy-13_DRh-I; Gypsy-13_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-840
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1576-1576 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 840 BP; 258 A; 243 C; 176 G; 163 T; 0 other;
     agttaacacc agccaactgc ccccttccct ttacccctct tgagccctac gacaccgaac        60
     accgcaccat tctattcacc cctctcggcc acccacaaac tggaacccat tcccttcacc       120
     ccactcagtc atcaacggca acaatattca agtggctata attccaagtg gctgcaataa       180
     cgccgctgaa ttatgagacc agcaacagca atgcagcgac ccagcgagcg aacgccaacg       240
     acgacagcga tgcagcgaca gcgacccagc gaccgaatgt caacaacgtc agaacgacag       300
     cgacagcgac ggaacgtcag cgatcgaatt gcatcggcaa cagcgcaata gcggaagaac       360
     accgagcgtc ggctagctgc ctcagctata gccgccgcta cccctaccct tcgccgagcc       420
     caggcataag tgcagcgtta gcatctggag tggagaaaca catcaggtca gacacccaaa       480
     accgttggtg tcggcttgga tatttctgca accgctctgc cagcggtatg ctgacgtcgc       540
     ggcgctgccc aagccaacaa gccaccaaaa tataattgtt agaattaatt ctgtttgtac       600
     ccccgatctg aacactacaa tattttgaat aataaaaccg cttgtaacga aacaattcga       660
     ttacagtttt attttaaagt aaaatcgtat taaataaaag gaaataagaa ggacgaaagg       720
     aagaaggacg aaggatcagc aggacgaatc agcatgaaat tcgtatcatt taggtaatat       780
     aaggggaatt atcccccctc tgaccatgac tggtcataac ttgcgcccga gcagtctcca       840
//
ID   Gypsy-13_DSer-I repbase;    DNA;    INV; 4169 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4169
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1988-1988 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           224..4168
FT                 /product="Gypsy-13_DSer-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTRRTPAKNRREVQDMEEVEEEQKEAVELKENENVLE
FT                 VSDMKNKIDNILQLLSLKIQIDESTNGRAKPQIDNFEKVVNDFDGQLVQQW
FT                 FEMFEKNADAYDLTLKQMYVQARGKMIGAAKLFLQSVCVSEYNELKRALIE
FT                 EFSSSTTSADVHRQLQSRKKKKSETFHEYILHLRQIAMAGKVEESAVLQYI
FT                 VNGLVDVKNEYKAILYSCKTFKSLREQYEIIMQLDDKPRNSWNKRSASPNN
FT                 QQKRKEFCFKCGSAEHKIKDCQSPTKCFKCNENGHIAKNCPFVEANVRKVV
FT                 DQSRFKLISVNGAEINCLIDTGSDVSLVTKKIAEKIGNIDIYKSASLLSGL
FT                 GQKKTKPIGFFTAEVVADQLFTQQKFLVVPNDVIDCGALLGHDFTRKFNFY
FT                 CDDNGFKLTGLRTEDKEADGFGSDVYNIIEASNLVTVSPRYKEAVSKLVEE
FT                 VQRRPSNPSNQCPVELKITPDGVIKPFHQSPSRLSANEAEAVKNQITEWLT
FT                 QGIIRKSSSNVASRVVVVKKKDGSLRVCIDYRKLNSMVLADCFPVPLMEEV
FT                 LEKLQEAAFFSTLDLENGFFHVAVAEASKPLTAFVTKEGLYEFNKAPFGFK
FT                 NSPAAFIRFVNHIFQDLINDNVMQLYMDDIIVYASTADECMKKTRRVLETA
FT                 MQFGLKIKWKKCSFMQSRIHFLGHTVENGKIWPGEEKTSAVNKFKTPKNIR
FT                 AVQSFLGLTGFFRKFIPGYAHIARPLTNLLRKDVEFQIGSAELQSLQELKR
FT                 ILSCEPVLHIYSRTAQTELHTDACKDGFGAVLLQVFDGQLHPVYFWSKKTS
FT                 ASEAERHSYILEAKAIYLALRKFRHYLMGIHFKLVTDCSAFKDTTRKDDIP
FT                 REVAAYVMYLQDFSCNVVHKPGNKMKHVDHLSRHPESVWIVTAEVAARIRN
FT                 AQQNDEYSKAILVILQDRPYQNFRMKGDILYRTVEGNDLIVVPKSMEKDVI
FT                 RESHEVGHFAVQKTIHSVKQQFWIPHLERKVTNFIANCIKCIIYSKKMGKQ
FT                 EGLLHCIAKGDTPLHTLHIDHLGPMDATSKHYKYILAIVDGFAKFVWLYPT
FT                 KTTGQEEVIRRFTEWSNVFGFPKRVVSDRGSAFTSGAFEEWLNINKVEHIC
FT                 STTGVARGNGQVERINRSIIAVIAKVSAEEPSKWFKYVPQVQKAINSQVNS
FT                 STKMSPFELLFGTRMYSHAEERLQEILNEEFVSQFNLERQEMRETAKKNIE
FT                 EAQQIYKQNYDKKRKRAHDYRLGDLVAIKRTQFVAGRKLASPYLGPYEVVQ
FT                 IKRNGRYDVRKAAQVEGPNLTSTSCDNMKLWRFVADNDDELVSSGSDEDEQ
FT                 EGR"
XX
SQ   Sequence 4169 BP; 1380 A; 793 C; 982 G; 1014 T; 0 other;
     tttgggggct cgtaccgggt ctgagataaa caattaagaa aagagttaaa ttaactagtg        60
     cgtgactaga agctgtgaac agaagttgtg aaattcggtt gaaaaaagga actgcgtagt       120
     aaagcgattc aggtagaaaa tatcaaagaa gacagctgcg cagtttaatt ctgtactctt       180
     atattccttt cgctgtgact tggatacggg gaaaaaataa aaaatgacgc gtagaacgcc       240
     ggcaaaaaat agaagagaag tacaagatat ggaagaagtc gaggaggagc agaaagaagc       300
     agtggaactg aaagaaaatg agaatgtatt ggaagtttcg gatatgaaga ataaaatcga       360
     caatatattg cagttgttgt cattaaaaat tcaaattgat gagagcacaa atggccgcgc       420
     taagccacaa attgataatt ttgagaaagt ggtaaacgat tttgatggtc aattggtgca       480
     acaatggttt gaaatgttcg aaaaaaatgc agatgcatac gatctcacac ttaaacagat       540
     gtatgtacaa gccagaggca agatgatagg tgcagccaaa ttgtttctac agtcagtgtg       600
     tgtgagcgaa tataatgagc taaagagagc actgatagaa gagttttcaa gcagtaccac       660
     cagcgccgac gtgcatcgcc agttgcaaag caggaagaaa aagaagagcg agacatttca       720
     cgaatatatt ttacatttac gtcagattgc catggcagga aaggttgagg aatcagcggt       780
     gctgcagtac atcgtaaacg gactagttga tgtaaaaaat gagtacaaag caatacttta       840
     ttcgtgcaag accttcaaat ccctcagaga acaatatgaa attataatgc aactggacga       900
     taagcctcgt aattcgtgga acaagcggag tgcatcacca aataaccaac agaaacgaaa       960
     ggaattctgt ttcaagtgtg gttcagcaga gcataaaatc aaagattgtc agtctccaac      1020
     gaagtgcttc aaatgcaatg agaacggtca tattgctaaa aattgcccgt ttgtagaagc      1080
     aaatgttcgc aaggtggttg accaaagccg tttcaaacta atctccgtaa atggtgctga      1140
     aataaattgt ttgatcgata caggatcgga tgtttcactt gtcacgaaga agattgctga      1200
     aaaaattgga aacattgata tttataaaag tgcatcgttg ttgagtggtc tgggccagaa      1260
     aaaaacaaag cctattggat ttttcaccgc tgaagttgtt gccgatcagt tattcacgca      1320
     gcaaaagttt ctagtcgtgc ccaatgacgt catcgattgt ggagcgttgc taggtcatga      1380
     ttttaccaga aagttcaact tttactgcga cgacaatggc ttcaaattga cgggtttgag      1440
     aactgaagat aaagaagcag atggatttgg ctccgatgtt tataatatta tagaagcatc      1500
     taatttggtt actgtttcac ccaggtataa agaagcagtg tcaaaactcg tcgaagaagt      1560
     ccagagaagg ccatcaaacc cttctaacca gtgtccagtc gagctgaaga tcactccaga      1620
     tggcgtaata aaaccatttc atcagtcacc atctcgtctg tctgcaaacg aagccgaggc      1680
     tgttaaaaac caaataacag aatggttgac ccagggaata atacgtaagt catcatcgaa      1740
     cgtggccagc agagttgtag tggtcaagaa gaaagacggt tcccttcgag tctgtattga      1800
     ctacagaaaa ctgaacagca tggtgttggc ggattgtttc ccagtaccgt tgatggaaga      1860
     agtattggaa aaacttcaag aggccgcatt tttctcaact ctggatctgg aaaatgggtt      1920
     ttttcacgta gctgtggcgg aggctagcaa gccgcttacg gcatttgtaa caaaagaagg      1980
     actctatgaa tttaacaaag ctccgttcgg atttaaaaat tcaccggctg catttatcag      2040
     atttgttaat cacatatttc aagacctgat caacgacaat gtgatgcagt tatacatgga      2100
     cgatattatt gtatacgcat ccacagcgga cgaatgcatg aaaaagacaa gacgtgtact      2160
     agaaacagca atgcagtttg gactgaagat aaagtggaag aaatgtagct tcatgcagtc      2220
     ccgtatacac tttttaggac atactgtgga aaatggaaag atatggccag gcgaagaaaa      2280
     aacatcggca gtaaataaat ttaaaacacc caaaaatata cgagcggtgc agtcatttct      2340
     tggtttaaca ggttttttca gaaagttcat tccaggttat gctcatattg cccgaccgtt      2400
     gaccaatctc ctcagaaagg acgtcgaatt ccaaatagga agcgcagaac tgcagtccct      2460
     tcaagagctt aagcgaattc tctcctgcga accggtgcta cacatatact cgcgaacagc      2520
     acaaactgag ctgcacaccg atgcatgtaa ggacggattt ggggcagttt tactgcaggt      2580
     atttgatggc caactgcacc cggtttattt ctggagtaag aagacgtcag cttcagaggc      2640
     cgaaagacat agctacatct tagaggcgaa ggctatctat ttagcgctca gaaagtttcg      2700
     tcattacctc atgggcattc acttcaagct tgtcacagat tgctccgcgt tcaaagacac      2760
     caccagaaaa gacgatattc cgagagaagt tgcagcgtac gtaatgtatc tacaggactt      2820
     tagctgcaat gttgttcaca agccagggaa caagatgaaa cacgtggatc acctgagtcg      2880
     ccatccagag tcagtttgga tcgtaacagc agaagtagca gcacgcatca ggaacgcaca      2940
     acagaatgac gaatacagta aagcaattct ggtcattctc caggatcgtc catatcaaaa      3000
     ttttaggatg aaaggcgata ttctttaccg aacagtcgaa ggcaacgatc ttattgttgt      3060
     gcctaaatcg atggaaaaag atgtcattcg agagtctcat gaagtcggcc actttgcagt      3120
     tcaaaaaaca attcattccg taaagcagca gttttggatc cctcacctag agcggaaggt      3180
     aacgaatttt atagccaact gtattaaatg cattatttac agtaagaaga tgggaaagca      3240
     agaagggcta ttgcactgca tcgccaaagg agataccccg ttgcatacac tacatatcga      3300
     ccatctgggg ccaatggacg ccacatcaaa gcattacaaa tatatactgg caattgtcga      3360
     tggattcgcc aagtttgttt ggctctatcc caccaaaact acagggcagg aagaggttat      3420
     caggagattc actgagtggt ccaatgtgtt tggatttcct aaacgtgttg tcagtgatcg      3480
     tggttccgca tttacatctg gagcgtttga agagtggctg aacatcaaca aagtggaaca      3540
     tatttgctca actactggag tagctcgtgg aaacggccaa gttgagcgta ttaaccgatc      3600
     aatcattgct gtcatcgcca aggtatcggc agaagagcct agcaagtggt ttaaatatgt      3660
     gcctcaggtg caaaaagcta taaactcaca agtaaattcc tcaacaaaaa tgtcgccatt      3720
     tgagctgttg tttgggacac gaatgtacag ccatgcagaa gaacgtttgc aagaaatcct      3780
     aaatgaagag tttgtctctc agtttaacct tgagcgacaa gaaatgcgag agacagctaa      3840
     aaagaacatt gaagaggcgc agcaaatata taagcaaaac tacgacaaaa agcgcaagcg      3900
     tgctcacgac tacagattgg gtgatctcgt cgcaatcaag aggactcagt tcgtcgcagg      3960
     aaggaagctg gctagcccgt atttaggacc atatgaggtc gtccaaatta agcgaaatgg      4020
     gcggtacgac gtgcgcaaag cagcccaagt ggaaggacca aacttaacca gtactagctg      4080
     cgataacatg aagctgtgga ggttcgtagc cgacaacgac gacgagttgg tttcatctgg      4140
     gtcagatgaa gatgagcagg agggccgag                                        4169
//
ID   Gypsy-13_DSer-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-244
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1975-1975 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Inserted in (TA)n microsatellites.
CC   TSDs may be 4-bp long.
XX
SQ   Sequence 244 BP; 82 A; 31 C; 60 G; 66 T; 5 other;
     tgtaaagtag tgaggaactg gcggacaacg aatacctagg ggtttcgttg tgaatggcgt        60
     ttgagcgatc gagagagcaa agggagcgtg gatcagttgc ggaaaagaag taaacagaag       120
     cagtcgcaat tttcgggagt mktttgaawg ttgttaaagt cgataaagtt gttaaagtcg       180
     tttaagttct tatattaatm wcagcatact aattctaaat aaacattata atacaaactc       240
     taca                                                                    244
//
ID   Gypsy-13_DSim-I repbase;    DNA;    INV; 6772 BP.
XX
AC   .
XX
DT   14-FEB-2012 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DSim_;
KW   Gypsy-13_DSim-LTR; Gypsy-13_DSim-I.
XX
NM   Gypsy-13_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6772
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1533-1533 (2012).
XX
RN   [3]
RP   1-6772
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [3] (Consensus)
XX
CC   [3]: ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..1290
FT                 /product="Gypsy-13_DSim-I_1p"
FT                 /translation="MGKSWLYSLKKDDFPAIAKALGIKLEGLVEEMRKTLS
FT                 EFIDQTTDEPETVAIVEALEKEYGKRPAVEVKLTGVEGLVRSLDFASMAEA
FT                 SGSRSERQEIGQERRDSSRERRERRETSRDRRETARAAPQDYAKVAKQVRE
FT                 WSFRYDGNEKPLEFLEQVEWSAMTYGLDINQIPRAMPELLTGRALKWFIAN
FT                 NKFWETWVEFIQSFQEFFLPRGFMTKLADQVRQRKQRHGENFKDYMVDMQT
FT                 LMRPLGMSQKETLARIRENSTPALRMFIRPYECRHLDALMALADEFEELDT
FT                 QRERFDLEQNNRARHQRDFPRGDQNAVCRRCQDDTAGPSRNIENRRDPDPV
FT                 RRGFVPNPAQACHRCGGQGHWSQECRNRPINYCWTCGRIGPRTSECCYRSG
FT                 NAMRPQPQRGNQGSQDAAPQN"
FT   CDS           5727..6518
FT                 /product="Gypsy-13_DSim-I_3p"
FT                 /translation="MAPAQSPPPPPPRMTAALSPPPPPPRMTAAQSPPPTP
FT                 PRPPRTPATPPPQPRSPTPPPQQGEWPRYDRQQAWEMPQAHVGQVVRTFEM
FT                 GGRLWHQQSVTWTWPASEETEDAPEARVWKEAEAIGWRMPGQESRDPRLRA
FT                 RAREASPEKEGPKEESPGVANPEREEWSWPAPGEAPPPPKLPRQMSCPEAR
FT                 QPPPRPCPCRQASLDGQKWREVPTEDWPPQVAEEAARQGTRKRRGHWAKLF
FT                 ELGGQRYRLKVRRGGEVRVTVAE"
FT   CDS           1116..4493
FT                 /product="Gypsy-13_DSim-I_2p"
FT                 /translation="MRWSGPLVSGVQEPANQLLLDLRENWPKDVGMLLQIG
FT                 KRHATPASEGQPGFARCCPSKLMGNLKAEERQLSATVLIDGVEIEATVDTG
FT                 ATASFISEELADRLQAAGEVVPTKREVRMADGRYEDVTSMVEVDIGLGERT
FT                 VRMQLLILHNIIDALVLGWDFLTRVGARMECAGLTVTIPVCSTGQSRPKEK
FT                 LSVAVVERADFSEEDVDQFLRSELTSLENVQGTSTVAEHRITMKDDQPVKQ
FT                 RYYPKNPKMQVEINAKVDELLEKGCIEPSRSPYSSPIVMVRKKTGQWRLCV
FT                 DFRQINARSVKDAYPMPMINYILDQLKEAKYISSLDLKDGYWQIPLEERSR
FT                 QYTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMMPHAFAYQDD
FT                 IIVIGRTLQEHMRNLKEVFKRLRAANLKVNADKCKFFRKELQYLGHRVTNQ
FT                 GIGTDPEKVAAIAQLKPPGNVKELRQYLGVASWYRRFVPDFATLVQPLNAL
FT                 LKKQAKWKWEDAHQAAFEAVKARLVADPILACPDFTRTFVLQTDASDYGLG
FT                 AILTQHSERGERVISYSSRTLNAAERNYSATEKECLAIVWAVRKLRPYLEG
FT                 YHFKVITDHMALKWLNNIESPSGRIARWALELQQYDFEISYRKGQLNIVAD
FT                 ALSRQPLQETSRRVSVEEDGQPREQQECRWLEEMRRKVKQQPEKFPDYLEE
FT                 DDKLYRHIPHRAGNEEVASWKMCVPVGQRQRVMTENHDMPTAGHLGSRKTI
FT                 ARIAARYHWPGMHRDIRKYVRNCESCMKYKSSQLQAAGKMLTQVPEEPWAT
FT                 VCADFVGPLPRSKHGNSMLLVLVDRFSKWTEIVPMRRATTETLRKAVRERI
FT                 VARFGVPKVMITDNGVQFTSRAFRRFLEELGVRHQLTAPYTPQENPTERAN
FT                 RTVKTMIAQFTGGDQRTWDEYWPELQLAVNTSVAESTGYSPAFITQGREPR
FT                 LPNALFDEKTTGTGKCIQTPGENAEKLKDIFELVRRNMEKAAQDQARHYNL
FT                 RRRPWRPKVRDTVWAKEHHLSKAAEGFAAKLAPRFDGPYTIKKFTSPVICV
FT                 LEHKTTKKEKTAHISDLKPGSADADGQEHSKKYNNNNNNKKGRKKICIYIY
FT                 TKQIIIVNQKKKKKKKTK"
XX
SQ   Sequence 6772 BP; 2053 A; 1612 C; 2116 G; 989 T; 2 other;
     tctggcgccc aagcgtgatt gtccgggcaa aagaaacaaa gcaagatggg gaagtcgtgg        60
     ctgtacagct taaagaagga tgactttccc gccatagcga aagcactcgg gataaagctg       120
     gaagggctgg tcgaggaaat gcggaagacg ttgtccgaat tcatcgacca gaccacggat       180
     gagccagaaa cggtcgcaat cgtagaagcg ctggaaaagg agtatgggaa aagaccggcc       240
     gtagaggtga aactcacagg cgtagaaggc ctggtgagga gcctcgactt cgctagcatg       300
     gcggaggcca gcggaagcag atccgaaagg caagagatcg gacaggaacg ccgagacagc       360
     agccgagaaa gaagggagcg gcgggaaacc agccgtgaca ggcgggagac cgcaagggca       420
     gcaccgcagg actacgcaaa ggtggcgaaa caggtgcgag agtggagttt ccgttacgac       480
     gggaacgaga agccgctgga gttcctggaa caggtggaat ggtcagcaat gacatatgga       540
     ctcgacatca accagatccc aagagcaatg ccggaactac taacgggcag agccctgaag       600
     tggtttatcg ccaacaacaa gttctgggag acatgggtcg agttcataca aagcttccag       660
     gaatttttcc tgcctagagg gttcatgaca aagctggcgg accaggtcag gcagaggaag       720
     cagcgacacg gcgaaaattt taaggactac atggtggaca tgcagaccct gatgcggcct       780
     ttaggaatgt cgcagaagga gacgctggca agaataaggg agaacagcac gccagcctta       840
     cgcatgttca tacgcccgta cgagtgccga catctggatg ctctgatggc tctggccgac       900
     gagttcgaag agctggacac ccaaagggaa cggttcgatt tagagcagaa caatagagct       960
     cgtcaccagc gagatttccc gaggggggac cagaacgcag tgtgcagaag gtgccaggat      1020
     gacaccgctg gcccgtcgag gaacatcgaa aacagaagag atccagaccc agtgcgacgc      1080
     ggttttgtgc caaacccagc acaagcctgc cacagatgcg gtggtcaggg ccactggtct      1140
     caggagtgca ggaaccggcc aatcaactat tgctggacct gcgggagaat tggcccaagg      1200
     acgtcggaat gctgctacag atcgggaaac gccatgcgac cccagcctca gaggggcaac      1260
     cagggttcgc aagatgctgc ccctcaaaat taatgggcaa tctgaaggcg gaagaaaggc      1320
     aactgtccgc cacagtgctc atagacggag tggagataga ggccacggtg gacactggag      1380
     ccacggccag ctttattagc gaggagctgg cggacaggtt gcaggcggca ggagaagtcg      1440
     tacctacgaa aagagaagtt agaatggcag atggacggta cgaagatgtc acatcaatgg      1500
     tcgaagtcga cataggactc ggcgagagga ccgttcggat gcaactcctg atcctacaca      1560
     acataatcga cgcactggta ttgggttggg atttcctaac aagagtggga gcacggatgg      1620
     agtgcgccgg actgaccgta acaataccag tgtgctcaac gggacaaagc aggccaaagg      1680
     agaagctctc agtggcagtc gtggagaggg ctgacttctc agaggaggac gtggaccaat      1740
     tcttgaggtc ggagttgacc agtttagaaa acgttcaagg gacgtcaacc gtggcagagc      1800
     accggataac gatgaaggac gatcaaccgg tcaagcagcg gtactatcca aaaaacccca      1860
     agatgcaagt ggagatcaac gccaaggtcg acgagctgct ggaaaaagga tgtatcgagc      1920
     cgtctagaag cccgtacagc tcaccgatag tgatggtgag gaagaaaaca gggcagtgga      1980
     gactgtgcgt ggatttccga cagataaacg caaggtccgt aaaggatgcg tacccgatgc      2040
     cgatgataaa ttacatcctg gaccagctaa aggaagcgaa gtacataagc agtctagatc      2100
     tgaaggacgg atactggcaa attccgttgg aagaaaggag caggcagtat acggcgttta      2160
     cggtgccggg aaagggcctg ttccaatgga aagtgatgcc attcggactg cactcagcgt      2220
     cggcaacgtt ccaacgggcg ttggaccaag taatagggcc cgaaatgatg ccgcacgcgt      2280
     tcgcatatca ggacgacatt atagtgatcg gacggacgct gcaggaacat atgcgcaact      2340
     tgaaggaggt gttcaagagg ctacgggcgg caaacctgaa agtgaatgcg gataaatgca      2400
     aattcttcag gaaggagcta caatacttgg gtcaccgcgt gacgaatcaa ggtattggaa      2460
     cggatcctga gaaggtggcg gcaatagcgc agctgaagcc gccaggaaac gtgaaggagc      2520
     tgaggcagta cttgggagtc gcatcgtggt acaggcgctt tgtgcccgat tttgcgacgc      2580
     tggtacaacc gttgaatgcg ctcctaaaga agcaggcaaa atggaaatgg gaagacgccc      2640
     accaagccgc attcgaggcc gtcaaggcca gactggtcgc cgatccgatt ctggcgtgcc      2700
     ccgacttcac gagaacgttt gtgttgcaga cagatgccag cgattatggg ctgggtgcaa      2760
     tcctaacaca gcattccgaa cgaggcgagc gagtcatctc ctactccagt agaacgctga      2820
     acgcagcgga gaggaactac tcggcaacgg aaaaggagtg cttagcaata gtatgggcgg      2880
     tcaggaagtt gagaccgtac ctggagggct atcacttcaa ggttatcacg gaccatatgg      2940
     ctctgaaatg gctgaataac atcgaaagtc cgtccggcag aatagcgaga tgggcgctgg      3000
     agctgcaaca gtacgatttc gaaatctcgt acaggaaggg ccagctgaac atcgtcgccg      3060
     acgcgctttc aaggcaacca ctgcaagaga cgagccgaag agtgagcgtg gaggaggacg      3120
     gacaaccgag agagcagcag gagtgtaggt ggctggagga gatgcggaga aaagtgaagc      3180
     agcagccgga aaaatttcca gactatctgg aggaagacga caagctgtat cggcacatac      3240
     cgcatcgggc gggcaacgag gaggtggcat catggaagat gtgtgtaccg gtcgggcaga      3300
     gacagcgtgt catgaccgag aaccacgaca tgccaactgc aggacatttg ggaagccgca      3360
     agacgattgc caggattgca gcccggtatc attggccagg aatgcatcgg gacataagga      3420
     agtatgtacg aaactgcgag agctgcatga aatataagtc cagccagcta caggcggccg      3480
     ggaagatgtt gacacaggtg ccggaggaac catgggcaac cgtgtgcgca gacttcgtgg      3540
     gccccctgcc gcggtcgaag catgggaatt caatgctgtt ggtcctggtg gatagatttt      3600
     caaagtggac cgagatcgtc cctatgagaa gggcgacaac tgagacgctg cgaaaggccg      3660
     ttcgagagcg gatagtggcc agattcggag tgcccaaagt gatgatcacc gacaacggcg      3720
     tgcagttcac gagtagggcg ttcaggaggt ttttggagga gctgggggtt cgacaccagc      3780
     tcacggctcc atataccccg caagagaacc ctacggaaag ggcaaacagg accgtcaaaa      3840
     caatgatcgc gcagttcaca ggtggcgatc agaggacatg ggacgagtac tggccggagc      3900
     tgcagctggc ggtcaacaca agtgtggcgg agagcacagg gtactcgccg gcgttcataa      3960
     cgcagggaag ggagccgagg ctgcccaacg ccttgtttga cgagaaaacg accgggaccg      4020
     gaaagtgtat ccagacaccg ggggaaaatg cggaaaaatt aaaggacata ttcgaactgg      4080
     tgcggaggaa catggagaag gcggcacagg atcaggcacg gcactacaac ctcagaagac      4140
     ggccgtggag acccaaggtg cgggacacag tatgggccaa agagcaccac ctgtcaaagg      4200
     cagccgaagg cttcgcggca aaattagccc caaggtttga cgggccgtac acgataaaga      4260
     aattcacgtc accagttata tgcgtcctag aacacaagac gaccaaaaaa gaaaagaccg      4320
     ctcacatcag cgatctgaag ccgggaagcg cggacgccga cgggcaagaa cactcaaaaa      4380
     aatataataa taacaataat aataaaaagg gaagaaaaaa aatatgtata tacatctata      4440
     caaaacaaat aataatagta aatcaaaaaa aaaaaaaaaa aaaaaaaaca aaataaataa      4500
     aatacaataa taataaagaa aaaaaaaaac aaacaactaa aaaaaaaaaa aaaaaaaaaa      4560
     gggaggagag ttaaaaatat aaatatcaaa ataaataaat aaataagaaa taaaagaaaa      4620
     caaaataaat aaataaatag ataaataaag accaaaaaaa aaggaggaga gttgaaaata      4680
     taaaaacaaa tatcaaaata aataaataac aaaaaaaaaa tacagatgcg gaatatcaaa      4740
     aaaaaaatac gggaaaaaag ctaaaaaaaa taaaaaaaca agaaaaaata caataaaata      4800
     aaataataat aagaaaatat aataatgtat gataaataaa taattagaaa aaacgaatca      4860
     attcgttggg gaggaaaggg ggaagacgat acaaggtatc gagtcgaagc agaagtcagc      4920
     aacacatacg cagccaagct ccgtcgtcag tacaggaata acggaacgga gtaacggaat      4980
     aaggagcaga cgcagagggt acgcagccaa gccgttacgg ttaacacgca cgggtacgca      5040
     gccaagctcc gttatcagta caggaataac ggaacggagt aacggaataa ggagaagacg      5100
     cagcgggtac gcagccaagc tccgttatca gtacaggaat aacggaacgg agtaacggaa      5160
     taaggagaag acgcaaaaac cgaggtttcg tcgtggagag cgcggctcga gctggtctat      5220
     tcaattttag atcatcatgg cagcgcacgt atttaacgcc cgggaagtta gggagaccgg      5280
     cgccggggaa cagcccggag cgatggggag tagggattcc gattcctacc tccagctcct      5340
     ggcgtcaccc ctggtgtcgc gatccccatc cccgggaagt atggaggacc cggaagagat      5400
     cccggacgtg aatctggagg acgaccagcc aatggcggag gaggagggcg tggccgaggt      5460
     catcaccctc tcctcggaga gcgaagacga cggaggcggc cacccgcggg cccgcggggt      5520
     ggacgcgcgg gggccgccgc cgccgagacc gcatggcagg agcggctggc tcggctgcaa      5580
     gaggaggaag aggcgttgtg ggcaccaacc acggagcagc cggagcccac gcagccgccg      5640
     ttgccgttga cgccgccgcc accgccgccg ccggcgccgc cgccccacca ccgccggcgc      5700
     agtcgccgcc cccgccacca ccccggatgg caccggcgca gtcgccgccc ccaccaccac      5760
     cccggatgac ggcggcgctg tcaccgccac caccaccacc ccggatgacg gcggcgcagt      5820
     cgccgccacc gacaccacca cggccgccgc gcacgccggc gacgccaccg ccgcaacctc      5880
     gctcgccgac gccaccaccc cagcaggggg aatggccgcg gtatgaccgg caacaggcgt      5940
     gggagatgcc ccaggcccac gtcggccagg tggtccgcac gttcgagatg ggcggccggc      6000
     tgtggcacca acagtcggtg acgtggacgt ggcccgcgtc ggaggagacc gaggacgcgc      6060
     cggaagcccg ggtgtggaaa gaggcggaag cgatcggctg gaggatgccg ggccaggagt      6120
     cccgcgatcc gcgattgcgc gcccgagcaa gagaagcaag cccggagaag gagggcccga      6180
     aggaggaaag cccgggagtc gcaaacccgg aaagggagga gtggagctgg ccggcgccag      6240
     gtgaggcgcc accaccacca aagctgccga ggcagatgtc ctgcccagag gcgcggcaac      6300
     cgccgccccg cccatgccct tgcaggcagg cgtcgctgga tgggcagaag tggagggagg      6360
     taccgacgga ggactggccg ccccaggtgg ccgaggaggc ggctcgacaa gggacccgga      6420
     agcgacgagg gcactgggcc aagttgttcg agctgggcgg acagcgctac cgtcttaagg      6480
     tgcggagggg cggggaagtg agagtgacgg tcgccgaata aagacgccag ccggcagtgg      6540
     aaaaccgtat gtcggggttk ctamcaccgg cgtggtaaca aaaaaaaaaa gaaaacataa      6600
     aaggaatttt ggggcgggag gggaaggcag gagaatttga atgtcaaaca gatggagcgg      6660
     agtcgtcagt ggcaccggac gaaggaacgg ggaagcggcc gatacaaagg gacgccgggg      6720
     cggaggaccg ccggaaccaa cagttttaaa atttaccgaa ggaaggggga ga              6772
//
ID   Gypsy-13_DSim-LTR repbase;    DNA;    INV; 1270 BP.
XX
AC   .
XX
DT   14-FEB-2012 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DSim_;
KW   Gypsy-13_DSim-LTR; Gypsy-13_DSim-I.
XX
NM   Gypsy-13_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1270
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1534-1534 (2012).
XX
RN   [3]
RP   1-1270
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 1270 BP; 342 A; 328 C; 410 G; 183 T; 7 other;
     tgtgaggagt tgtaaaactc cccacaaatc tcctgtaggg gagcggccta gcaacagtcg        60
     agacgaaggg cgaagcggaa agaccgagag ttaacggtac cgcagtggac cttggactcc       120
     gctggccaag ggcgaagagg tcgaacggta acggtgcggg cacaaagagg acgcaccgtg       180
     aactaacggt accgctgtgg accttggacc ccagcgagtc aagggcaggc cggttaaacg       240
     gtaacggggc gggcacaaag aggacgcacc gtgaatcaac ggtacaatat gtggaccttg       300
     tacccaagcg ggccgtgcgc aaaaagggaa atagcgggat ccctgcggcc tataaagggt       360
     aggcgcgagc acgaatgtgg gacagtgaag gagaccggga gatcgcgtgc ggacggtggc       420
     caagtgtcgg agtgtcgagc gaaggtatcg gaagtgtgaa cacgcgggcg aacgcgagaa       480
     awgggagcag tgcgagcatc gggcgacgag aagcccgaag gattcagaag gacgaakcgc       540
     cacaagcgag tggagattct gggagcgaag gacaaggagc cgacgtgcca gaaggatcgt       600
     cggagtcagt ggatagcaca ggtggttcca ggacgagcgt tgcctcaccc gggacgatac       660
     acctgcgcac cataacatcc tagatccgtt ccggccggcg gaaggacctc cggaagctaa       720
     ggaaaagaac ccgacgggtc cgcaagggtc agtggagtca gtggtcggta caggtggttc       780
     caggacgagc gttgcctcac ccgggacgat acaccctaac cccacaacat cctaaaccca       840
     gaccgaccgg cggggttctg ccagaggags cgactgcgac gtagcgggtt caaggcggac       900
     agtggagtca gtggtmggca caggtggttc caggacgagc gttgcctcac ccgggacgac       960
     acacccgtgc cccataacat cctagtcccg mccggaccga ctcgtcgtcc acgccgagga      1020
     gccagcggta ccaaggaggc gaggcggtac accaggagcg ccgcaggaag tagcgaggta      1080
     tccacaactc tctagaagaa ttatcccttg tattcggaac agcacaataa acgactatac      1140
     ccagaacata ttgcktttcc ttggtcgggc aatcacacaa atcataaatt tggtgggacg      1200
     aacgcacaaa ctctctgagc tagccgctgc aawcagtagc gagcgaaata aagaaaatca      1260
     gttcgttaca                                                             1270
//
ID   Gypsy-13_DTa-I repbase;    DNA;    INV; 4455 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DTa_;
KW   Gypsy-13_DTa-LTR; Gypsy-13_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4455
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1620-1620 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3141-3614] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..1663
FT                 /product="Gypsy-13_DTa-I_1p"
FT                 /translation="MGSQVSATGKEWRSGQPRHGRANVTCYRCQEPGHIAT
FT                 NCPKKVQSTGVGVRSEKRVELCAIVEPQSSMLVNGERFPITFDSGAECSLI
FT                 KESVSNKLVGKRIHSVISLKGIGNASTYSTAQVESNIMIDGNSLVILFHIV
FT                 PDECMKNNIVIGREILAQGFLVEVSYDNFKIVQTKAVNVCETVKHTDFDSI
FT                 ETEMEGNEKEILISLLKQHSESFIEGTPQTRVSTGEMHIRLIEPTKTVQRR
FT                 PYRFSPSERELVRAKIKELIEYKVIRPSSSPFASPALLVKKKNGSARLCVD
FT                 YRELNRNTVADRFPLPL"
FT   CDS           1809..3980
FT                 /product="Gypsy-13_DTa-I_2p"
FT                 /translation="MPFGLKNAPSVFQRAVLKALGSLAYSFVIVYMDDILI
FT                 VSETKEEAFERLQLVLDVLVKAGFTFNISKCFFLRSTVRYLGYEIKAGEIR
FT                 PNLNKIESLVALPPPKSVATLRQFIGLASYFRQFIPGFSQLMKPLYFLTSE
FT                 KNSFVWQTQHEEVRSKVISVLTNKPVLIIFDPQFPIELHTDASSIGYGAIL
FT                 LHRINSKPHVVEYYSRATSSCESRYTSYELETLAIVNAVKHFRHYLHGRKF
FT                 VIFTDCNSIKSSRNKVELSPRVYRWWEFLQAFEFEIEYREGKRMAHVDFLS
FT                 RNPVYQKSKSVPSKIEEKRIDLTEISENWILVEQQKDSEISDIVTKLKNDD
FT                 LPLALVATYEIRSNVLYRKIQRNSRTRCLPVVPRTFRWSVINQVHESIMHL
FT                 GWEKTLDKVYDHYWFSGMAKYVRRFVENCITCRVSKGTSGKPQIELHPIPK
FT                 ISIPWHTVHIDISGKLSGKSDRKEYIIVQIDAFTKYVYLFHTFSLDANTCI
FT                 SAMKSSIAIFGVPTRLIADQGRSFTGTKFAQFCSNQKIQLHLIGTGASRAN
FT                 GQVERVMSTLKNLLTAVETSSRSWQDALGDVQLALNCTVNRSTKFSPLELL
FT                 IGKVGRPLGLIPISDTETEIDKIKLRELAAKNMEEVARYEKTKFDKNMAKV
FT                 IRFCVGDFVLLKNSERQQTKLDPKFRGPFLVVEVLDGDRYVLKSTQNNRRY
FT                 KYPHESLRKLPDVQIPEELDANYE"
XX
SQ   Sequence 4455 BP; 1397 A; 743 C; 1026 G; 1289 T; 0 other;
     tcagaagtgg gattcggccc taaccaaact tcttcaaggg atgtcttcgc gttgttagag        60
     caacaaaacc ggaattttct ggaactggtt aagaagctac agacgccggt gaacgagtta       120
     caacagacta gcgagatttg cttgccgaaa cgcaatccgg acattgctgg ggtggatgcc       180
     acgcagtggt gcgctacggt cgacatcatt ttgcgagcta gaccattaag tgacagcgct       240
     cttatattgg cgttgagtaa agctttggaa ggcgcagcgg cccagtggtt atcacaaata       300
     tgctacccag gaataaattg gcaagagttc cggcaattgt ttgagcagcg atacgagaca       360
     tcagaaacgc cagccgccgt catttttaat cttcttaata gtcgtccaag caacggtgaa       420
     agtttgcctg tttttgcgag tcgcatcgtg acgtcattgt gcacaaaatt gcgtaatttg       480
     aattctgaac aaatttgcat agcgatggtt cttggacaca tggctaattt cgaccggcgt       540
     ttgcaacgaa tgatacacac aacgcctgta aacaatcgac gtgaactgca agcggagctg       600
     caagtattct cagtgctgaa ggagcgccct gttacatcaa actgggaacc ggacgccaag       660
     cgtgctagaa ctgtggaact caaatgttat cagtgtggaa aaccaggtac ataaaaagca       720
     agactgtaga tccggaatgg gatcccaggt ttcggcaact ggaaaggagt ggcgttcagg       780
     acaacctcgt catggaaggg caaatgtaac ttgctacaga tgtcaggagc cgggacacat       840
     cgccactaat tgtccaaaaa aagtgcagag taccggagtg ggagtaagat ctgaaaaaag       900
     agtggagctg tgcgctatag tggaacccca atcgagtatg ctggtcaatg gtgagagatt       960
     cccaattaca tttgattcgg gggctgagtg ctcattaatt aaggaaagcg tttctaataa      1020
     gttagttggt aagaggattc atagcgttat ctctttaaag ggaataggta atgccagtac      1080
     ttacagtacc gcacaagttg aatcaaacat catgattgat ggaaattctt tggttatttt      1140
     gttccatata gtaccagacg aatgtatgaa aaataatatt gtaattggaa gggaaatatt      1200
     ggctcaaggg tttttagtgg aagtttccta cgataatttt aagattgttc aaactaaagc      1260
     tgtgaacgtt tgtgaaaccg tcaaacatac tgattttgat agcattgaaa ctgaaatgga      1320
     aggaaatgaa aaagaaattt taatatcatt attaaagcaa cactcagaat cttttatcga      1380
     aggcactccg caaacgcgtg tgagtactgg ggaaatgcat attcgtttga ttgaaccgac      1440
     taagactgta caaaggcgac catacagatt tagtccaagc gaaagggagt tagtacgtgc      1500
     taaaattaaa gaattaatcg agtataaagt tatcagacct agtagttcac catttgctag      1560
     ccctgcgtta ttagtaaaga agaaaaacgg ttcagcaaga ctttgtgttg actataggga      1620
     attgaataga aatacagtag ctgataggtt tccattaccg ttatagcaga tcaaatagct      1680
     agacttaggg gagctaaata tttcacttct cttgacatgg ctagcgggta ttatcagatt      1740
     tcaatgcacc ctgaatcatt gagtatactg cttttgttac tcctgatggg cagtacgaat      1800
     ttctatcgat gccctttgga ttaaagaacg caccctcagt gtttcaaaga gctgtgttga      1860
     aggcacttgg cagtcttgct tattcgtttg ttatcgttta tatggacgat atattaattg      1920
     tttcagagac aaaggaagaa gcgtttgagc ggttgcaact tgtattagac gttctagtaa      1980
     aggctggatt cacatttaac atttcaaagt gctttttctt gaggtctaca gttcgctacc      2040
     ttggctatga gataaaagcg ggggagatac gtccaaattt aaacaaaata gaatcgctag      2100
     ttgcgttacc tccacctaag tcagttgcta ctctaagaca gttcattggg ttagcttcat      2160
     attttcgtca attcattccg gggttttctc aattgatgaa gcctttatat tttctcacat      2220
     ctgaaaagaa tagttttgtt tggcaaacac agcatgaaga agttcgcagt aaagtcatca      2280
     gtgtattaac aaacaagcct gttttgatta tttttgatcc ccagtttccg atagaactgc      2340
     ataccgacgc cagctctatc gggtatggtg ctatcctttt gcaccgtata aactctaagc      2400
     ctcatgtggt tgaatactat agtagagcaa ctagttcctg tgagtccagg tatacatctt      2460
     atgaattgga aacgttggct atcgtgaatg ctgtaaaaca ttttcgtcac tatctacatg      2520
     ggagaaaatt cgtaattttt actgactgta attcaatcaa atcttctcga aacaaagtcg      2580
     aattatcacc tagggtttat cgttggtggg agtttctaca agcgtttgaa ttcgaaattg      2640
     aatacagaga aggtaaacgc atggcacacg tagactttct ttctaggaat ccggtgtatc      2700
     aaaagagtaa gtcagtacca agtaaaatag aagagaaacg aattgactta acagaaatat      2760
     cggaaaactg gattttggtg gaacaacaaa aggattcaga aatatctgac attgtaacta      2820
     agttgaagaa tgatgattta ccattggcat tggttgccac ttacgaaatt agatcaaatg      2880
     ttttgtacag aaagattcaa aggaattcaa gaactcgttg tttacctgta gtccctcgta      2940
     cgttccgatg gtcagttata aatcaggtac atgaatctat catgcatcta ggttgggaga      3000
     aaacgctaga caaggtgtac gatcattact ggttttctgg tatggcaaaa tatgttcgaa      3060
     gatttgtgga gaactgcatt acatgtagag tttctaaggg gacgtcagga aaacctcaaa      3120
     ttgaattaca tccaattcca aaaattagca ttccttggca taccgttcac atagatatat      3180
     cgggaaaatt gagcggaaaa agtgatcgta aagaatatat cattgtacaa attgacgctt      3240
     ttactaaata cgtttatctg tttcacacct tttctttgga cgctaatact tgtataagcg      3300
     ctatgaaatc ttctattgct atttttggcg taccaacacg tttaattgcc gatcagggac      3360
     gcagcttcac gggcacaaag tttgctcaat tttgttctaa ccaaaagata caattacatt      3420
     taatcggaac aggtgcaagt cgagccaacg gtcaagttga aagggttatg agtacattaa      3480
     agaatttgtt gacggctgtt gagactagtt ctagatcatg gcaagatgca cttggggatg      3540
     tacagttagc ccttaattgt acagttaatc gtagcactaa gtttagtcct ttagagcttt      3600
     tgattggtaa agttggacga ccactggggt tgattcctat tagcgatact gaaactgaaa      3660
     ttgacaagat taaattaagg gagttggccg ctaagaacat ggaagaggtt gcaagatatg      3720
     agaagacaaa atttgataaa aatatggcta aagtaattcg gttctgtgtg ggtgactttg      3780
     tgttgcttaa aaacagtgag agacagcaaa cgaaattaga cccaaagttc agaggacctt      3840
     ttttggtggt cgaggtattg gacggagacc gatacgtttt gaagtctaca cagaacaata      3900
     gacgttataa gtacccacac gaaagtttgc gaaagttacc ggatgtgcaa attcctgaag      3960
     agctcgatgc aaattatgaa taacaaaagt ttgttgaaac agaagagtat tcgtgaagtc      4020
     atgtaattgg cgatggacga gggttgcttt agaaatgtgt ttgatgaatt cgtgaagcca      4080
     tgtgttgggc gatggacgag caatgttgtt gatgaattcg tgaagccatg tgttgggcga      4140
     tggacgagca atgttgtcga tgaattcgtg aagccagtat gtattgttgt tatgtatttt      4200
     gaattacgaa gttatgattt aaacattaaa tgatattttg cttggaaatg taattgaaag      4260
     aaatggttga taagagaatg tcacacgaga tatgtttata taaccaagac atgttaaata      4320
     tagaagtaaa gttaggttat ggaataatat atgaacttga gactatgtgg ctaagttttc      4380
     aataaaatta taaagttgga atgaaactga gatgtttacc gtagacacga ggacgtgtat      4440
     atgtcagaat ggccg                                                       4455
//
ID   Gypsy-13_DTa-LTR repbase;    DNA;    INV; 367 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DTa_;
KW   Gypsy-13_DTa-I; Gypsy-13_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-367
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1621-1621 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 367 BP; 97 A; 75 C; 106 G; 89 T; 0 other;
     tgtcggagag gaagtactgt agcatatcga taggcacgag actttaaggt atgaccatgg        60
     gttgttgggt ggtgttggta aatactagtc ctggcagaat ggagactcag ttttgcgaac       120
     tggggctgtg tgtggcttcg tatgcgttgc tagatctggt ctcttccttc tttttctggt       180
     ttccggcgtg aaagggtcac gcgtaagtct aagagttccg agctgtaaga tctgaaagac       240
     aacgatgagc aacaaaggca acgaagactc gctgcatccg ccaggaccga gtatggaaaa       300
     taagaaatcg gacgataacg cgaccaacaa cgacgacttg cacggggatg acttcaattc       360
     cccgaca                                                                 367
//
ID   Gypsy-13_DVir-I repbase;    DNA;    INV; 4628 BP.
XX
AC   .
XX
DT   07-OCT-2011 (Rel. 17.09, Created)
DT   07-OCT-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DVir_;
KW   Gypsy-13_DVir-LTR; Gypsy-13_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4628
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1826-1826 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2143-2646] - Reverse transcriptase
CC   Positions [3717-4190] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           562..2724
FT                 /product="Gypsy-13_DVir-I_1p"
FT                 /translation="MPHAPRQSHGEEGGSLYQLQNEIKRLSETMSRFISMQ
FT                 CASASGQMSNSQPAINNLVQDTGSEVDDEYQQSTATRQASVKEIANTLPEF
FT                 DPTDENAISVNQFIDRVNKVVEAYQWDEKFLMLAIYTRLKGPARMWFDSSP
FT                 RLHTTWHDFADALRDEFGVTPDEAEIHYAMAKSIRRPKETIKEYCFRMSAL
FT                 GVRFNLSEAAVIRYTRSGLQHRELQQSIAAMHFSTMKQMRETAESYFANRG
FT                 RQHEVRDSTALKYSNVEQRPEKDSKTMKPKATLKCYNCNEFGHFANQCPKE
FT                 PKCQRCTNCNKFHPSNVKCKSAEVNVNRLGAINRDKWFSKQIIVQKQPYVA
FT                 FIDTGSQVSMVRKSVAQYINGDRQKCSIRIRGICGGTRFLTESKILDIWID
FT                 GRIVKAQVYIADDEILQEDFLLGQDVIIDAHLTFTFTNGKTAFESKRAVQH
FT                 TETSDSKFAKLLSNFKLEADKVRMHTLLDKYTDVFSSGLEGIGRTNVIQAR
FT                 ITLEGGHIVSQAPYRIPEPKRDIVTAMIDELLQKDIIAMSTSEYASPIVLI
FT                 KKQNGGDRLCVDYRRLNKLIKKENFPVPNIEERLQEAKRFKYFSSLDLNSG
FT                 YYQIEIAPDSRKYTAFITTDGLFEFKRMPFGLKNAPAVFNRLMAEIQSAFV
FT                 KVICCTIWMIFLLEATHWTECMKSLRVSLQVLKECGLTLNIDKCELYKQTI
FT                 TAQRSVRRPTPPSLCLLSQAT"
FT   CDS           2811..4328
FT                 /product="Gypsy-13_DVir-I_2p"
FT                 /translation="MLLRKNQQFIWNQQQKDAFNELKQCLVSKPVLTSYRL
FT                 DADHELHTDASSIGLAGVLLQVEDGQLKPIAYFSRATSKSERHFHSYELEA
FT                 LAVVESLERFKYYVCGKQIRVITDCNALRTSMEKRGLIPRIARWWLRIQEF
FT                 DIEVIHRSGSRMEHVDALSRAPYEDAREMETASLKISKTIMDEPDWLFAIQ
FT                 LQDEKIQKLVTDMKSAKVTENDEYVIELDRLYRKYNNKFLWVVPKQLRYQI
FT                 LYECHDKSGHMSVEKTMSRITNLFWFPRMRNYVKGYIKSCVGCAFFKQPGG
FT                 RKEGQYHYDDIKPIPFSTVHIDHLGPFPKSSKRNEPILVCVDAFTKFTIMR
FT                 AVKSTATKHVIDILKEVTSYLGMPQRIVSDRGTAFTSKDFGKFCTDNNIKH
FT                 VLNAVRTPRANGHAERTNRITLSMLLPMSENEKRWDEKMHSIQWSINTMVN
FT                 KSTNCSPFQLLCGYEPRDILQNTLVKLLQNQNPTMLTDTELQQLRSDAAHR
FT                 VNDHRAEAKR"
XX
SQ   Sequence 4628 BP; 1517 A; 928 C; 1031 G; 1150 T; 2 other;
     gttcagaagt gggataataa tctatgtatg tacatagata tgccgtgttc gcctacacgc        60
     atatacaaac acatgcagag aagaaacgca tagaagtctt gatgagaagt ttgcagtggg       120
     atatgttccc aaaggtctaa gtgacaaaga ttactgcaag ctgggataag ttccctcgat       180
     cttagcgtca gactgtttca taagttggaa tacgtttcct gcagcgtcgg tgtgtataag       240
     tacagataga agccctgtat gtacgcatgt gttggtgaat ttcacaaggg aatttcacca       300
     tcgaatttca caacttgagc taacattgcg attgctgttg cggagaagca attcacagaa       360
     gagttggcat cattttgtac gagcacttcg tagacaaaaa ttgaaaagag ataataacaa       420
     atttggaaat atgcaaagga taggagattt aaaagttgat cagctaaaat tcctgctgcg       480
     agagcgagaa ttgtcgacaa gtggcacacg ggatgaatta attcgtcgat tacaggagca       540
     tgaaggctca gatgaagttg aatgccacat gcccctcggc aaagccatgg agaagaggga       600
     ggatcacttt atcagctaca gaatgaaata aaaaggttaa gcgaaactat gagtcggttt       660
     ataagcatgc aatgcgctag tgccagtgga caaatgtcga attcgcaacc ggctataaac       720
     aacttagtgc aagatacagg aagcgaggtg gatgatgagt atcaacaaag cacagccaca       780
     cgtcaagctt cggtcaagga aattgctaac acgttgcctg agtttgaccc gacagatgag       840
     aatgccattt cagtcaatca gttcattgat cgtgtcaaca aagtggttga ggcatatcaa       900
     tgggacgaaa agtttttaat gctcgcaatc tacactcgac tcaaaggtcc agccagaatg       960
     tggtttgact cttcgccaag acttcatacg acatggcacg actttgcaga cgcacttcgc      1020
     gacgaatttg gtgttacacc agatgaagca gaaatccact acgccatggc aaaatcgata      1080
     agacgtccaa aagagacaat aaaggaatat tgtttccgta tgtccgccct gggagttcga      1140
     tttaatctta gcgaggcagc tgtaatacga tacacacgat caggtcttca gcaccgtgaa      1200
     ctgcagcaga gtatcgcagc aatgcacttc tcaacaatga agcagatgcg agaaacggcg      1260
     gaatcctatt ttgccaatcg aggtagacaa catgaagtca gagacagcac agctctaaag      1320
     tatagcaacg ttgaacaaag gcctgagaaa gattcaaaga caatgaaacc aaaggcaaca      1380
     ctcaaatgtt ataattgcaa cgagtttggt cactttgcaa atcagtgtcc aaaagaaccg      1440
     aaatgtcagc gctgtaccaa ttgcaacaaa ttccacccga gtaacgtcaa gtgcaagtca      1500
     gctgaagtaa atgtaaatcg tcttggtgcc ataaatagag acaaatggtt ctctaaacag      1560
     ataatcgtcc aaaaacaacc gtacgtcgct tttatagata ctggtagcca agtgagtatg      1620
     gttcgcaagt cggttgctca gtatattaat ggggatcgtc aaaaatgctc aattcgtata      1680
     agaggcattt gcggtggtac acgatttcta actgaatcta agattttgga tatatggatc      1740
     gacggaagga tcgttaaggc ccaagtttac atcgccgatg atgagatctt acaggaagac      1800
     ttcttgctgg gacaggatgt tataatcgat gcgcacctca cgtttacctt cacaaatgga      1860
     aaaacggctt ttgagagcaa aagagcagtt cagcatacag aaacaagtga ttccaagttt      1920
     gctaagcttc tttctaattt taagctcgaa gctgataaag tccgaatgca cacattattg      1980
     gacaagtata ctgatgtgtt ttcaagtggt ctagaaggaa ttggccgcac aaacgtcata      2040
     caagccagaa ttacccttga gggaggacat attgtttctc aagcaccata ccgcatacct      2100
     gaaccgaagc gagatattgt caccgccatg attgatgaac tcttgcaaaa agatataatc      2160
     gctatgtcaa catccgagta tgccagtcct attgtactaa tcaagaagca gaatggaggt      2220
     gatagactat gtgttgacta ccgtcgtctc aataagctca ttaagaagga aaactttcca      2280
     gttcccaaca tcgaagagcg tttacaagaa gccaaacgat ttaaatattt ctcatcgttg      2340
     gatttaaata gcggatatta tcagattgaa atagcccctg atagtcggaa gtatacagca      2400
     ttcattacaa cagatggact ttttgaattc aaacgcatgc catttggatt gaagaacgcg      2460
     ccagctgtgt ttaaccgact tatggcagaa attcaaagcg cgttcgtaaa ggtgatatgc      2520
     tgcactatat ggatgatatt cttattggaa gcaactcatt ggacggagtg catgaaaagc      2580
     ttgcgcgtgt ccttacaggt tttgaaagaa tgcggcttga cattgaatat cgacaaatgt      2640
     gagttatata agcagacaat cacggcacaa aggtcggtga ggagaccaac gccgccatct      2700
     ctttgtttgc tgagccaagc aacgtgaatg aagtaagaaa gtttttgggt ctcagtggat      2760
     attttcgaaa atttgtagca ggttatgcta taatatctga gccattacgt atgctactac      2820
     gtaaaaatca gcagtttata tggaatcaac aacagaagga tgcattcaac gaattgaagc      2880
     aatgcctcgt atctaaacca gtgcttacaa gttatcgatt ggatgctgat cacgagttac      2940
     acacggatgc aagctctatt ggattagccg gagtgctgct acaggtggaa gatggccaac      3000
     taaaaccgat agcctacttt agtcgagcaa cttctaagag cgaaagacac tttcatagct      3060
     atgaacttga agcattagca gtggtcgaat ctttggagcg ttttaagtat tacgtctgtg      3120
     gaaaacagat cagagtaatt actgattgta atgcattaag aacatcaatg gaaaaacggg      3180
     ggcttatacc acgaattgca cgatggtggt tgcgtattca agagttcgat atcgaagtaa      3240
     ttcaccgatc aggctctaga atggaacatg tcgatgcttt aagccgtgct ccatatgagg      3300
     atgcacgtga gatggaaaca gccagcttaa agatatccaa aacaatcatg gatgaaccgg      3360
     attggttatt tgctatacaa cttcaagatg aaaagatcca aaaacttgta accgatatga      3420
     aatccgccaa agtaaccgaa aatgacgagt atgtcattga actagatcgg ctctatcgca      3480
     aatacaacaa caaattcttg tgggttgtgc ctaagcagct acggtatcag atcctttatg      3540
     aatgtcatga taaatcaggt catatgagcg ttgagaaaac aatgagccgt attacaaatc      3600
     tattttggtt tccacgcatg cgaaattatg tcaaaggcta tataaagtcc tgtgtgggct      3660
     gcgcattttt taagcaacca ggtggtcgca aagagggaca atatcattat gacgacatca      3720
     agccaatacc attttcaacg gttcatatcg accacctggg accatttcca aagagttcga      3780
     aacgcaacga gcccatactt gtttgtgtcg atgcatttac caaatttacg attatgcgcg      3840
     ccgttaaaag cacagcaacc aagcacgtca tcgatatcct caaagaagta accagctatc      3900
     tggggatgcc acaaaggatt gtctccgatc gaggtacagc tttcacctca aaagattttg      3960
     gaaagttctg tacagacaat aatattaaac acgtccttaa tgctgttcga acacccagag      4020
     ccaacggaca tgcagaacgc actaacagaa tcaccttgtc aatgttgctg cctatgtccg      4080
     aaaatgagaa gcgttgggat gagaagatgc actccatcca gtggagtatt aacacgatgg      4140
     ttaacaaatc tactaactgt tctccgttcc agctattatg cggttacgag cctcgggaca      4200
     tactacaaaa cactttagtg aaattgctcc aaaaccagaa tcctactatg ctgacagata      4260
     ccgaattaca acaactaaga agcgacgctg cccatcgggt caatgatcat cgagctgaag      4320
     ccaaaagack atatgacgca agacacgcca agccgamagt gtataaacct ggagatattg      4380
     ttttggtcga aaatgaacca tgcacagggt tcaaaattgc agggacctta taatcagcaa      4440
     agttttgcca aaggaccgat atcccgaatg ctgagcgaac acaaaaacat tataaatcgg      4500
     tgtattcttc agacaaaatc aaaccatggt gtcagttacc gccagaggag cccgacgagg      4560
     atgaagactc cgttgatgac caagtaaact catctcgcga ggacgcttcg aatgtcagga      4620
     aagccgaa                                                               4628
//
ID   Gypsy-13_DVir-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   07-OCT-2011 (Rel. 17.09, Created)
DT   07-OCT-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DVir_;
KW   Gypsy-13_DVir-I; Gypsy-13_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-239
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1827-1827 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 239 BP; 83 A; 49 C; 46 G; 61 T; 0 other;
     tgtaagcgtc tggcaatctc aacccattgc cattcacagc gaatcgataa ttaggcgaag        60
     aagtatcgag ttaagcatca ctagagaaaa agcagcaagc caataaagaa ggaggacgga       120
     cgcttattaa gaatctaaga gataagcaaa tctttgtgaa gttaacgcat taaactattc       180
     tatccttact tatgtttgca taagcgtatc tcactcagtc gacctgaccg attcttaca        239
//
ID   Gypsy-13_DWil-I repbase;    DNA;    INV; 5077 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DWil_;
KW   Gypsy-13_DWil-LTR; Gypsy-13_DWil-I.
XX
NM   Gypsy-13_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5077
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5077
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..1014
FT                 /product="Gypsy-13_DWil-I_1p"
FT                 /translation="MPKKSTQARNSRIEEDSGSSIIAIAQSVEAVNKKIDR
FT                 MCEALERSFISAQPTAVPGPVSPPEHTTWGGLPQPRQDALPRAASTTYGAA
FT                 WARSPPVPQFNPGLLPLFDGTGSWGEFERLVDKVANYYQWAEDEKCLAVVL
FT                 NLRGRASTFYGTLPTQPTLTYSALCAAMRQRFMLDCRSSYQLLRHRIQGPR
FT                 ESLPDFALELERLAQCAFSGMPGHMYDQILVQQFIDGMRETPLQGLVISSR
FT                 PIQLQEALDVAMRVQAQFGRTHGKPVLHSQVVESGDIHTPKRRRRRRGRSQ
FT                 LTKEAPLTTSHPSENSSMPMSRGEHWQ"
FT   CDS           852..5063
FT                 /product="Gypsy-13_DWil-I_2p"
FT                 /translation="AGSAQSGGREWRHPYTKTSPTKTRSQPAHERGTANNK
FT                 SPFGKQQHANVAGRTLAIVDNAPTQQYSYSISNTSKCTGDPQAQFSEERIS
FT                 CPLTPSPQASRTERLDEGESAEPAVENILAPIDRPDTRNSATSTRNVRHSN
FT                 VSTVNGVERSAIFEHSVPTTLEPSTDQSSRHPTTPLHESLWTEPAVGSENP
FT                 GLNEETVLARLFREPLAAVPTNICAKCPPEVNRKDAAILNGRRGTGNPIQA
FT                 TYSPVPNAKDSLHCIVFFQQRPLPIVVDTGAAVSVLNWRDVKQPIRTSPCQ
FT                 VTMYGMASSTLTSTEETMVELQVLRKPLIHRFVLVKDSTPTLLGTDFWLEH
FT                 KVVIDFDKMHLRFHWGTMPLLRASEAPRNPIYLMTPVCLAPRSDTHVRVQC
FT                 ATTKPALPSLLKEDCYTELPDDIVLSTGVVQPVAGQFSARISNLSAHERTL
FT                 PPTLVLGDLETVEVVLPDRCEDASSDSVDWDRFGEVDLPPTKQLMLKELLD
FT                 RYRLIFARNDDETGQTNLASHHIDTGPARPIKQMARRIPLARKAEVQQLVA
FT                 DMENRGIIRPSVSPWSSPVVLVKKKDGATRFCVDYRRLNEITVKDSYPLPK
FT                 MDDILSTLYGSQWFSTMDLQSGYWQVRMDEPSRPKTAFTCDAGLFEFNVMP
FT                 FGLCNAPATFERLMDNLLSGVMWKFALVYLDDVIVYSRTTEEHLTHLQDVF
FT                 KRLAEAGLKLSPKKCSFFKKQVSYLGHIVSRDGLQACPSKIDKVLSWPTPR
FT                 STKEVRSFLGLCSYYRKFIPNFATIARPLHQLTEKLRRFEWDTHCSHSFDT
FT                 LKQCLTTAPVLAFPNDTGQFILDTDASNSGAGAALHQLQDGQERVIEYYSK
FT                 CFQPVERNYCVTRRELLAVVRATKHFHHYLYGRPFLVRTDHASLQWLYNFK
FT                 EPEGQMARWIERLQQYDMQIQHRSGTQHGNADSLSRRPCSDCPTCERVERK
FT                 NGVAVLFTQVLLPDLRKEQEADQALGKVRDWMNKSERPPKTTLWGESPEIR
FT                 ALWHLYDRLAFDEIGVITIKNSENIPVALMPRSLVDAAIRGVHDSPSGGHF
FT                 SAKKTLAKAKKRFYWIGQSADITLWCARCTICNARKGPPRRTVGRLQPSLM
FT                 GAPFDRLAIDILGPLPTTPRGNRYVAVVMDYFTKWPECAAIPDQTAETVAR
FT                 ALVQEVFCRFGVPFVLHSDQGRNFEAGVFQACMRLMTVEKTRTTPLHPQSD
FT                 GMVERFNRTLLDYLAKFVSTSQHDWDELLPMALLAYRSAVHESSGYSPARL
FT                 TFGRELRLPNDLLFGTPAPVPTEVPEFLAKLQNQLRVVNANARRQLLTAAQ
FT                 TNKIRYDLRSHPQEFCPGDEVWLYSPSRRVGRCPKLQCDWIGPATIVRRIS
FT                 DLVYEIRPPGKRVTRTVHVNRLAVYRPDPRNDLVLGQEPRV"
XX
SQ   Sequence 5077 BP; 1293 A; 1352 C; 1310 G; 1122 T; 0 other;
     ttggtgtcag gtgtggggtt atgttcggtt actgcgaaga acctcaccac gtgtaaaatg        60
     cctaagaaat cgacgcaggc tcggaacagc agaatagaag aggacagcgg cagttctatt       120
     attgctatag cacaatcagt ggaggcggtg aataaaaaga tcgaccgaat gtgcgaagcc       180
     ttagaacggt cctttataag cgcgcagccc acagcggtgc cagggcccgt ttcgccgccg       240
     gaacacacca cgtggggtgg gttaccccaa ccaaggcagg acgcgctgcc acgggccgct       300
     tccaccacct acggagcggc gtgggcgcga tcaccccccg tcccgcaatt taatccaggt       360
     ttgttgccgt tgttcgatgg aactggatct tggggcgaat ttgagcgact ggtagacaag       420
     gtggcgaatt actatcagtg ggcagaggat gagaaatgtt tggcagtggt gttgaatctg       480
     cgcggtcgcg cctcaacatt ttatggcacc ttgcctacac aacctacact tacctactca       540
     gcactgtgtg ccgccatgcg tcaacgattc atgctagatt gccggtcgag ctatcaactg       600
     ttgcgtcatc ggatacaagg acccagggaa tcattgcccg atttcgcatt ggaattggaa       660
     cgcttggccc aatgcgcttt tagtggaatg cccggacata tgtatgacca gattctggtg       720
     caacaattta ttgacggtat gcgcgaaact ccgctacagg gattagtaat ttctagtcga       780
     ccgattcagc tacaagaggc attggacgta gcgatgcgag tgcaagccca gtttggacgc       840
     acacacggta agccggttct gcacagtcag gtggtcgaga gtggagacat ccatacacca       900
     aaacgtcgcc gacgaagacg aggtcgcagc cagctcacga aagaggcacc gctaacaaca       960
     agtcaccctt cggaaaacag cagcatgcca atgtcgcggg gcgaacattg gcaatagtag      1020
     acaacgcccc cacccaacaa tacagctatt ctatctccaa caccagtaaa tgtaccggcg      1080
     accctcaggc ccaattcagt gaagaacgca tcagttgccc actaacgccg agcccccagg      1140
     catcacgaac ggagaggcta gatgagggtg aaagcgcgga accggcagtg gaaaatattc      1200
     tggcccctat cgaccgtcca gatacccgaa attcagccac cagtaccagg aacgttcgcc      1260
     attctaacgt ttccaccgtt aatggagttg agcggtctgc catatttgag cattccgttc      1320
     ctaccacatt ggagccatcc acggaccaga gcagcaggca tccaaccacg ccgttgcacg      1380
     agtcactatg gacagagccc gcggttggaa gcgagaaccc tggcttgaac gaagaaaccg      1440
     tattggcgcg attgtttcgt gaacccttgg ccgccgtccc aacaaatata tgcgctaaat      1500
     gcccccctga agtaaacagg aaagatgctg ctatcttaaa tggccgacgt gggacgggga      1560
     atcctatcca agctacgtat tcacctgtac caaatgctaa ggacagctta cattgtattg      1620
     ttttctttca gcagaggcca ttgccaatag tggtggatac cggcgcggca gtctcggtgt      1680
     tgaattggcg agatgtgaag cagccaatac gaacctcacc atgccaggta accatgtatg      1740
     gtatggcgtc gtcaacgctc acctccactg aagaaacgat ggtagagttg caagtgctgc      1800
     gcaagcccct gattcatcga tttgtcctgg tgaaggattc tacgcctaca ctgctgggta      1860
     ctgatttttg gctagaacac aaggtcgtga tcgactttga taagatgcac ctaaggttcc      1920
     actggggtac catgcccttg ctccgcgcct ccgaagcgcc acgaaatccg atatacttga      1980
     tgactcccgt ctgtttggcg ccacgctccg acacgcatgt cagagtgcaa tgtgcgacga      2040
     ctaagccggc gttaccgagc ttactgaagg aagactgtta cacagagctg ccggacgata      2100
     tcgtcctgag caccggcgtc gtccaaccag tggccggcca attttctgcc aggatatcga      2160
     atctaagcgc acacgagaga acgctgccac ccacactagt tttgggcgac ttagaaaccg      2220
     tagaagtggt attaccagac agatgtgaag atgcgagctc agattctgtc gattgggacc      2280
     gattcgggga agtggaccta ccgcctacaa aacaactaat gctaaaggaa cttttggatc      2340
     gctatcggct tatttttgcc cgaaacgatg acgagactgg tcaaaccaac ttagcttctc      2400
     accacatcga taccgggccg gcacgcccta ttaaacagat ggcccgaaga atacctcttg      2460
     cgcgcaaagc tgaggtgcag caactggttg ctgacatgga gaacagaggc ataattcgcc      2520
     cgtccgtcag tccgtggtcg tcgccggtgg tgctagtcaa gaagaaagat ggagcgacac      2580
     gattttgcgt ggactatagg cgcctgaatg agataacagt caaggactca tacccgctgc      2640
     ccaaaatgga cgacatccta tccacgttgt acggctccca gtggttttcg acgatggact      2700
     tacaaagcgg atactggcag gtgcggatgg acgaaccctc ccgaccaaag acagctttca      2760
     cttgcgatgc tggacttttc gagttcaatg tgatgccatt tgggctttgc aacgcccccg      2820
     ctacgtttga acgtttgatg gacaatcttc tgtctggggt gatgtggaag ttcgcgctag      2880
     tctatctcga tgacgtgatt gtttactctc gcacgaccga ggagcacctc acacacctgc      2940
     aggacgtgtt taaacgactg gcagaggctg gccttaaact tagtccgaaa aagtgcagct      3000
     tctttaagaa acaagttagt tacctaggcc atatcgtgag tcgtgatgga ttacaggcgt      3060
     gtcccagcaa gattgataaa gtgctgagct ggcctacacc tcgaagtacc aaggaagtgc      3120
     gatcgttttt gggtctttgc tcatactacc gcaagtttat ccccaacttc gctactatcg      3180
     ctcgaccgct ccaccagctg actgagaaac ttcgacgctt tgaatgggac actcactgca      3240
     gtcactcctt tgacaccttg aagcagtgtc taacgacagc ccccgtcttg gcgtttccta      3300
     atgacaccgg tcaatttatt ctagacacgg acgcctcgaa ttctggggcg ggtgcggcgc      3360
     tccatcaact acaagatgga caagaacgag taatcgaata ttatagtaaa tgtttccaac      3420
     cagtagaacg taactattgt gtaacacgtc gagagctcct cgccgtagtc cgtgccacta      3480
     aacactttca tcattatttg tatggccgtc cgtttctcgt acggactgac catgcgtctt      3540
     tacagtggct gtacaacttc aaagaaccag aagggcagat ggcacgttgg atagaacgtc      3600
     tgcaacagta cgacatgcag attcagcatc gaagtggtac acaacatggt aacgctgaca      3660
     gcctctctcg ccgaccttgt agcgactgtc ccacatgcga aagagtcgaa cggaaaaatg      3720
     gagtggccgt gttgtttacc caagtcctgt tacccgacct gcgcaaggag caagaggcgg      3780
     accaggccct cggtaaggtg cgcgattgga tgaacaagtc cgaacgaccg cctaaaacaa      3840
     cattgtgggg cgagagccca gaaattagag ctttgtggca tctctacgac cgattagcct      3900
     ttgatgaaat aggagtgatt accataaaaa actcggagaa tataccggta gcccttatgc      3960
     cccgctcact ggtagatgct gccattcgag gcgtgcacga ctctccatcc ggaggtcact      4020
     tcagtgctaa gaagacttta gccaaagcga agaaacgatt ttactggatc ggccaaagtg      4080
     ccgatataac cctctggtgc gcacgctgca ccatctgcaa cgcacgcaaa ggaccacctc      4140
     gaagaaccgt cggtcgcctg caaccaagcc taatgggagc cccgttcgat cgtctagcga      4200
     ttgacattct aggccctcta cccactacgc ctcgtgggaa ccgttacgtc gcggtcgtta      4260
     tggattattt taccaagtgg ccggaatgtg cagccatacc ggaccagaca gccgaaaccg      4320
     tagctcgagc gttggtacaa gaagtcttct gtcgattcgg cgttccattc gtcttacact      4380
     ctgatcaagg acgcaacttc gaagcgggcg tcttccaggc ctgtatgcgg ctgatgactg      4440
     ttgaaaagac acgtaccacg ccgctgcatc cacagtcaga cggcatggtg gaacgcttca      4500
     atcgcacgtt gctagattac ttggcaaagt ttgtatctac tagccagcat gattgggatg      4560
     agctgctgcc catggcgtta ttggcctaca ggtcagcggt tcatgaaagc tccggttatt      4620
     cgcccgcaag gctaacgttt ggaagagaac ttaggctgcc caacgattta ctatttggaa      4680
     caccagctcc tgtcccaacg gaagtcccgg aattcttggc taagctgcaa aatcaactgc      4740
     gggtggtaaa tgcgaacgct cgccgccaac tgctaacggc tgcccagact aacaaaatcc      4800
     gctacgacct acgatcgcac cctcaggaat tctgccccgg cgacgaagta tggctctatt      4860
     cacctagccg aagagtaggc cgttgcccaa agctacaatg cgattggatt gggcccgcta      4920
     caatagtacg tcggatttcg gatcttgtct acgaaattcg accccctgga aaaagagtta      4980
     ccagaaccgt gcatgtgaac cgtttggctg tttaccgtcc cgatcctcgc aacgacttgg      5040
     tactcgggca ggagcctcga gtctaaggag ggggtaa                               5077
//
ID   Gypsy-13_DWil-LTR repbase;    DNA;    INV; 370 BP.
XX
AC   scaffold_181074;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_DWil_;
KW   Gypsy-13_DWil-I; Gypsy-13_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-370
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181074; Positions  446439  446070.
XX
SQ   Sequence 370 BP; 112 A; 84 C; 94 G; 80 T; 0 other;
     tgtaacgtag acagcctggg tggcaactcg tgtagtagga aaacgcaaac tgtccccctt        60
     aagaagcggt cccattctct acggctgggc acactaataa cggcgccacc gggagggcta       120
     gtttttttga gcgagcgcgg ccaacttaac gaagagaaga agatagggaa aaagagaaga       180
     agggcttgaa agttttcgct gccgccaaga caaggaaaat aaagagtttg aataaacgaa       240
     agaaactatc tctgttttct ttacgattct gctgagttat cttaggcctg acgatcgtac       300
     gcccaaccgt aaaccaaccg ctcggccacg ggtggcgtta ttttgttcca caaaggcaaa       360
     acacgttaca                                                              370
//
ID   Gypsy-13_HeAr-I repbase;    DNA;    INV; 5348 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5348
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5561-5561 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           529..1647
FT                 /product="Gypsy-13_HeAr-I_1p"
FT                 /translation="MEVELTTLFLQLKLLREAIVKLGPSRRQGQNFDKKIG
FT                 EAKALYSKFKCIIEGTSKEKCSEELVQLVSNIESLYKNTIKFESEVSNEQK
FT                 MAAEKFSLKTAVSLLPKMNGDEQVTQDLIDAIGLYSSMLEGTDSVLLIKFV
FT                 LTTRLTQGARIRLSPTYASVDSLLADMKKHLLTVKSDVAIQAKLTRTRQDN
FT                 KSIADFGAEIERLMTDLTISQAGEDSEAYKILQPFNEKYAIRKFADGLRNQ
FT                 RLGTIITARNLTSLKDAIRVAEDENCASSSQVMTYQRWPSRSSFSTFNRGR
FT                 GDSVRRHSVRNSYTQSTRKNVNMGHNGGMRGRSNNAYRGRQTQQGRRRVAY
FT                 FSHVRSDNDSLSMSRSSEGGQLNETQFFRV"
FT   CDS           1625..5296
FT                 /product="Gypsy-13_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MKRSFFESKHILAYDSINWVNLVINSIHSEWLIDTGA
FT                 SISAVKNIFLRDNALNCKIVKDELVINGVGGSLRAIGYVHLKLEHRQCSFV
FT                 HKFYIFDDLPCKSVGILGQDFLQKYGGIIDFSTNRLTLKNHARQLVSMPLR
FT                 TYDFLLTIPPRCEVVRYFPVNRAEDCVVIRKELRKGVFLASVMARPRNGMI
FT                 PIRILNTTSEEVMCSMSNVEVFPLSNFDCCNFVKPEKDVERVKKIFSLLKL
FT                 DYLRSEERLSVEQICAKYPDIFHIPGDKLAITNVYKQSIRLKDNVTPVYRK
FT                 QYRIPYMQKKEVDRQVQEMLENGIIEESVSEWSSPVLIVPKKADRSGEKKW
FT                 RVVIDYRQLNEKIQDDKFPLPNINEILDSMSGAVYFSHCDLSQSYYQCSLD
FT                 EDSRKYTAFTTDKGQYQMCRLPMGLKISPSAFSRLMTVAMSGLNYDKCLVY
FT                 LDDLVVFGRNLEEHNRNLMSVFSRLREVNLKLNPTKCEFLKKQILYLGHVI
FT                 SAEGISPDPEKVIVIKNYPRPTNSEEVKRFVAFANYYRKFIPNFARIVIPM
FT                 TKLCKKNMVFQWTEQCEESFLLLKQALMNPPVLDYPNFSDKNTFILQTDSS
FT                 GFAIGSVLCNGNGKPVAYASRSLNKSELNYPIIEKELLAIVWSVKYFRPYL
FT                 YGRKFVVKTDHKPLLYLFNMTDPSSRLTKFRLCLEEYDFEVEYVKGKENVL
FT                 ADALSRIVISSEELKSMHEKTISVMTRAQCKQLKNSDIRKTDSAVNRTDHP
FT                 RIVEVLKKQGNDIEVLQVGVDKWEELLRNKKNDCKTIFAKSRNLMYMPENS
FT                 SIYINYESLSASSRDELSKDIVTFCVENGIKEVVILKNCYNKEMIEKLAKY
FT                 FKENSKSICGDFKVCVVTGVRRVEDIDERKVIMNDFHILPTSGHAGIRRMV
FT                 NNIKKYYYWPSIEKDIGEYVRKCDKCQKQKYQKNIREPMTITTTASSAFEK
FT                 IYLDVVGPFDRDEYGNVYILTLQCELTKFVEAYPLKNKSANEVARVLAENF
FT                 ILRYGIPEGIATDRGSEFISKVMVELCSILGIRKTTSTAYHHESIGSLENV
FT                 HKTLGAYLRIQTNNSTTSWSSWIPYWCFSYNTTVNTVTKYTPYELVFGKIC
FT                 RLPSNLQGASVEPLYNFDNYPLEFKYRLQRAQADAKQNLVASKILRKECYD
FT                 RNINPITYKEGDLVLIKNETGTKLDCVYDGPFVVVKDESPNVVIKDKSNVD
FT                 KVVHKNRTKLYCKR"
XX
SQ   Sequence 5348 BP; 1852 A; 733 C; 1206 G; 1557 T; 0 other;
     tggcgaccct gccattcgaa cggaccctgc cattcgaacg gaccctgcca ttcgaacgga        60
     ccctgccatt cgaacggacc ctgccattcg aacggaccct gccattcgag cggatcttgt       120
     gattcgagca gaccctgcga gaccctgcga gagcggttgg acaatatcga aacgccatgg       180
     gaagcacgac gtccaaagaa gaagtaatag tagcccagac ggcagcagga ggatcaaatg       240
     tcgcgacggt ggcgaaggaa caattagcaa cgaccaacac ggtgctgttt tttatagcca       300
     cttgttttgc gcttatgatc attggcgtgg tattctggtt atatagaaga tgtcaccaga       360
     actggattga agagaaaata cgacaaaggg agatgcaaag agtagtgcag acggcctaag       420
     gagcatacgg agcgacagga agatctgaag taagtgttta aatatgtact aagtgttgtg       480
     acaatgttgt ggtttattgt gaattagaga caataagttt ttgttcaaat ggaagtagag       540
     ttaacaacgt tatttttaca gttaaaatta ttaagagaag ctattgttaa attaggtccc       600
     agtaggcgac agggacaaaa ctttgataaa aagataggtg aagcaaaagc cctttatagt       660
     aaatttaaat gtataattga aggaacgagc aaagaaaaat gttcagagga attagtgcaa       720
     ttagtgagta acatagaaag tttgtacaaa aatactatta agtttgagag cgaggtcagt       780
     aacgaacaga aaatggcggc agaaaagttt tcgttgaaaa cggcggttag cttactaccg       840
     aaaatgaatg gagatgaaca agttactcaa gatttaattg atgctatagg attatatagt       900
     tctatgttag aagggaccga tagtgttctt ttgattaagt ttgtgctaac tacacggctt       960
     acccagggtg ctaggattcg gttgtcacct acttacgcgt cggtagacag tcttttggca      1020
     gatatgaaga aacatcttct tacggtaaaa tctgacgttg caatacaagc taagttaaca      1080
     cgcactaggc aagataataa atcaattgca gactttggag cagaaataga aaggctgatg      1140
     actgatttga ctatttctca ggcgggagaa gattcggaag cttataaaat attacaacca      1200
     tttaacgaaa aatatgcaat taggaagttt gcagacggcc ttcgtaatca acgtcttggt      1260
     acgatcatta cggcacggaa tttaacatcc ttaaaagatg ctattagggt agcagaggac      1320
     gagaattgtg cttcatcgtc acaagtcatg acgtaccaac gctggccctc aaggagtagt      1380
     ttttctacat tcaatagagg tcgtggagat agtgttagga gacattctgt aagaaattcg      1440
     tacacgcaga gtacgcgcaa aaatgtcaac atggggcata acggtggaat gcgcggtcgc      1500
     agcaataatg cttatcgagg acggcagact cagcaaggta gaaggcgtgt agcatacttt      1560
     tcgcacgtgc ggagcgataa tgattcattg tcaatgtcac gaagtagcga aggtggacag      1620
     ttgaatgaaa cgcagttttt tcgagtctaa gcatatttta gcttacgata gtattaactg      1680
     ggttaattta gtgataaata gtatacatag cgaatggtta atagatacgg gtgcgtcgat      1740
     atcagccgta aaaaatattt ttttaaggga taacgctttg aactgtaaga tagttaagga      1800
     tgagttagtg attaatggtg taggaggtag tttacgagct ataggttatg tacatttaaa      1860
     gttggaacac agacagtgtt cattcgtgca taagttttat atatttgatg atttgccttg      1920
     taagtcagtt ggcatattgg gacaggattt cttgcagaag tatggaggta ttatagattt      1980
     ttcgacgaac agattgactc ttaaaaatca tgctagacag ttagtttcga tgccgctaag      2040
     gacctatgat ttcttattaa ctatacctcc gcgttgtgaa gtagtaaggt attttcctgt      2100
     taatagagca gaagattgtg tagtgattag gaaagaatta cgcaaaggag tttttttagc      2160
     tagtgtgatg gctaggccta ggaatgggat gatacccatt agaattttaa atacaacctc      2220
     tgaggaagtt atgtgtagca tgtcgaatgt agaagttttc ccattaagta atttcgattg      2280
     ttgtaatttt gtaaaacctg aaaaggacgt tgagcgtgta aagaaaatat tttctttact      2340
     taaacttgac tatttgaggt ccgaggagag gttgtcagtt gagcaaatat gcgcgaaata      2400
     tccagatatt ttccatattc caggagataa gttagctatc acgaatgtat ataagcagtc      2460
     gatacgatta aaagacaatg ttactccagt ttataggaaa cagtatagga taccgtatat      2520
     gcagaaaaag gaagttgata gacaggtaca ggagatgcta gagaatggta ttattgaaga      2580
     atcagttagt gagtggtcta gtcctgtatt gatagttcct aaaaaagcgg atcgtagtgg      2640
     tgagaaaaaa tggcgtgtag tgatagatta cagacagttg aatgaaaaaa ttcaggacga      2700
     taaatttcca ttaccgaata taaatgaaat cttggattcg atgtcaggag ctgtttactt      2760
     tagtcattgt gatttatctc aatcgtatta tcagtgtagt ttagatgaag atagtcggaa      2820
     gtatacggct tttactacgg ataaaggtca gtatcaaatg tgcaggttac ctatgggatt      2880
     aaaaataagt ccaagtgcgt ttagcaggtt aatgactgta gccatgtctg gattgaatta      2940
     tgacaaatgt ctagtatatt tggatgacct tgtagtgttc ggaaggaatt tagaagagca      3000
     taatcggaac cttatgtcag ttttttctcg actaagagaa gtaaatctta aacttaatcc      3060
     aacaaagtgt gaatttttga aaaaacaaat actttattta gggcacgtaa tttcagcaga      3120
     aggtatttca ccagacccag aaaaggtcat agtaattaaa aattatccgc gtccaacaaa      3180
     tagtgaggaa gttaagcgtt ttgtagcatt tgcaaattat tataggaaat tcattcctaa      3240
     ctttgctaga atagttattc caatgactaa gttgtgtaaa aagaatatgg tgtttcagtg      3300
     gaccgaacaa tgtgaggaat catttttatt attaaaacaa gcattgatga atcctccagt      3360
     attagattat ccaaattttt ctgataaaaa tacttttata ttgcagacag acagttcagg      3420
     ttttgctata ggtagtgtct tgtgcaatgg gaatggaaaa cctgttgcat atgctagtag      3480
     atctttgaat aagagtgagt taaactatcc tataatagag aaagaattgc tggctatagt      3540
     ttggtcagtt aagtatttta gaccatattt atatgggaga aagttcgttg taaaaactga      3600
     tcacaaacca cttttgtatt tgtttaacat gacagatcct tccagtaggt tgactaaatt      3660
     tcgattgtgt ttagaagaat acgactttga ggtcgaatat gtgaaaggaa aggaaaatgt      3720
     attagccgat gctttatcca gaatagttat ttcaagtgaa gagttaaaga gcatgcatga      3780
     aaaaactata tctgtaatga ccagagcaca gtgcaaacag ttaaaaaact cggatattcg      3840
     taagacagac tctgcggtta ataggactga tcaccctagg atcgtagaag ttcttaaaaa      3900
     acaaggaaat gatatagaag tacttcaggt aggtgtagat aagtgggaag agttgttacg      3960
     taacaagaag aatgattgta aaacgatatt tgcaaagtcg cgtaatttaa tgtatatgcc      4020
     agaaaactcg agtatttata taaactatga atctttatcg gcatcatcgc gagacgagtt      4080
     gtcgaaagac atagtcacat tttgtgtgga aaatggaata aaagaagtag ttattttaaa      4140
     aaattgttat aacaaagaga tgatagaaaa actggcaaaa tattttaaag agaatagtaa      4200
     atcgatatgt ggagatttta aagtttgtgt agtaacgggt gtacgaagag tggaagatat      4260
     agatgaaaga aaggtcatta tgaatgattt tcatatttta cccacgagtg gacatgctgg      4320
     aatacgtagg atggtgaaca atataaaaaa gtattattat tggccatcta tagaaaaaga      4380
     tatcggagag tatgtgcgga aatgtgataa atgtcagaaa caaaagtatc agaaaaatat      4440
     tagggaacca atgaccataa caaccacagc atcatcagct tttgaaaaga tttatttaga      4500
     tgtagtagga ccttttgata gggacgaata tgggaatgtg tacatattga cgttgcagtg      4560
     tgaacttact aagttcgttg aagcctatcc attaaaaaac aagtcggcaa atgaggtagc      4620
     aagagtttta gcagaaaatt ttattttaag atatggaata ccagaaggca ttgcgacaga      4680
     taggggttct gaatttattt caaaagttat ggtagaatta tgtagtatct tgggaatcag      4740
     gaaaacaaca tcaacagcgt atcatcacga aagtatagga tcgttagaaa acgttcataa      4800
     aactttaggt gcatatttga gaatacaaac aaataacagt acaacatcat ggagttcttg      4860
     gattccgtat tggtgttttt catataatac aacagttaat accgtaacca agtatacacc      4920
     ttatgaatta gttttcggaa agatatgcag attaccaagt aatctacaag gagcaagtgt      4980
     tgaaccattg tataattttg ataattaccc tttagaattt aagtatcgat tacaaagagc      5040
     tcaagctgat gctaaacaaa atttagtagc tagtaaaata ttgaggaaag agtgttatga      5100
     tagaaatata aatccaataa cttataaaga aggtgatttg gtgttaatta aaaatgaaac      5160
     gggtaccaaa ttagattgtg tatatgacgg accgtttgtg gttgtcaagg atgaatcacc      5220
     aaatgttgta attaaggata agtcgaatgt agataaagta gtgcataaaa ataggactaa      5280
     gttatattgt aaaaggtaaa aaaaaaaaaa agtatgcatt tatttttttt tttcctttgg      5340
     aagggtga                                                               5348
//
ID   Gypsy-13_HeAr-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-301
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5591-5591 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 301 BP; 93 A; 49 C; 61 G; 98 T; 0 other;
     tgtggtgtgg tctatgatca cgtagtgatt agttagtatt gataatgtta agataagtag        60
     acgataggaa tgcctcgtac agaataagat atttaataag ataataatta gttaagataa       120
     gcacgtagct tttcctttgt ataaatagcg tagtatactc aataaaggtg tgcacttctt       180
     agtaggtatt ggttgccttg actataccta aatatgtagt tctgttgttt tattaacacg       240
     tctaccctca tcaacaccta aggaccctgc ctgtcggaag gttggcaagc ccaacatcac       300
     a                                                                       301
//
ID   Gypsy-13_Hmel_I repbase;    DNA;    INV; 3925 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy;
KW   Gypsy-13_Hmel_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3925
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           500..937
FT                 /product="Gypsy-13_Hmel_I_1p"
FT                 /translation="PKLHFTLLXFTSATSYNQINRNLRVKTSNATALQPNS
FT                 NHIALSHLNTHIHRVDRPCTSPLRLHATVSTDHDLSTVENLSIRISTAWIA
FT                 RVCHTCDNTLRSLQTTTSARVKRTPRTHGLLELPQEIPISTGLRLRNNYWY
FT                 GRTHYGR"
XX
SQ   Sequence 3925 BP; 1189 A; 1091 C; 651 G; 946 T; 48 other;
     cggccatcct gctagcacac gtcctcgtgt gttggttagc ctagaagaaa aagctacaac        60
     agtacctcgt accgctcggc caacctacac cagaacctta ccaaccaact tccagaaccg       120
     tacactagaa ttgtaataca cgtacactag taattacact agtaattgta taccagaacc       180
     ttatacctga acactatacc tgaactgtgt acctgaactg tatacctgaa ccttatacct       240
     gaaccttata ccagaacctt ataccdgdac cttataccwg raccttatac caggacctta       300
     taccagracc ttataccagg accttatacc aggaccttat accagaacbt tataccdsaa       360
     chttatacca gaacaacttg acaccagawc aactcgacac cagatcaact cgacactaca       420
     acttgacact aatctggatc ataattgtaa ctaatcacta cacaaatacc acagccatgt       480
     accatcgaca tcatcataac caaaacttca ctttacttta cttyacttta cttcagcaac       540
     aagttacaac caaattaaca gaaacctccg agtaaagacc tctaacgcca cggctctcca       600
     gccgaacagc aatcacattg ctctctcaca tctcaatacg catatccatc gagtggatcg       660
     cccgtgtacg tcacctctgc gactacacgc tacggtctct acagaccacg acctcagtac       720
     ggtcgaaaac ctctcaatac gcatatccac cgcgtggata gcccgtgtat gtcacacctg       780
     cgacaacacg ctacggtctc tacagaccac gacctccgcc agagttaaac gcacaccgcg       840
     cacccacgga ctacttgagt tgccccaaga gataccgatt tctaccgggc tacgactacg       900
     aaataactac tggtacggtc gaacacatta cggccgatag aaccatttac tcgagtctct       960
     tcaactactt aagcttgaac accatcatta tcatcaacaa catcataaat tacacattga      1020
     tttcgtcggg tacatgactt rctggcattt tcctcaacct atcgtaagca aatttgtacg      1080
     ttacaagacg tttayaattt acagmwttya gtgtgtamcg akcrcactcc aaaacttyga      1140
     caaccttaaa tgaaccttta aatttcgaat ctaattttdc cyaatttctc tcttcgtttt      1200
     vtaacaatac gctaacagaa aatttactaa ctttagtttt tgtcatatca aaacgggacc      1260
     taccatattc cgcacacttc gtaataatgt ctgatgctac tdaacgaatt tcgtcaatgt      1320
     caacgwcagt ctatacctca ctactacaca tcaatgatac aaatcaatga cacacatcaa      1380
     hgatacacac cahtgayaca catcaaygac aaatcaayga cacatcaatg ayayacacca      1440
     ccgatacaca tcaatgataa cggtatcgcd acttcacgta ttaaaagctc aaagctcccg      1500
     gtttatcgta caatttatca cgagttgtac tctcctacag attcttgcta caacctatta      1560
     ccgctagtct caaacgccgt taatatggac tttaacacac tcctgacgcg ccttacctgc      1620
     cttttagcat gaggtaaacc cgccgccawg agatgccaac caatgtctac tagtgaaacc      1680
     accaccagtg aaacatcttc cctggtcagc aatgatgcgr gttggagccc caaacaaagc      1740
     cacaagtcac ctcgtgaaca ctcchagagt caatgcctgc cgcatgaaac aaaagaacac      1800
     acttcgcraa cgcgcctgtc agaatgaaaa tgtactcttt cttatcgttt cacygctgag      1860
     cctacccgcc acgtctaaac gaaccgtatg ncacggcatc attaccttag ggatcdgatg      1920
     cagcccagct tgaacyctgc chgagtgaga tttcgcgacc ctacaagcaa cgcagtcatc      1980
     cacaaatcct ccagcacacc atgaccggaa accagcaaaa gtcaaaahgc tgttcaatag      2040
     tcccctcagc ctcgagacga acaacagrtt caaaactgac ggaaatagga agctaatccg      2100
     acgaactgcc acaacttaat cacagtctcc ggaggcgata gagacctgac tagcctccac      2160
     ttcaaacccc aagtacacca ccctcgtcct aaagaaggaa cacttcacta ggttcaaaga      2220
     gaaaccagcc cttgtcacag cttccaacac tgcattaagt cctcccatac tggaccgcta      2280
     aatcggttga gacaatgaaa atgtcctcaa aatacaccac cacgcaatcg cgaaccaaat      2340
     cacccaacac gatcacaatt gtcctctgaa aaaccgaaat tgaattcttc agaccaaaag      2400
     gcacagtcaa gaattcaaac tgcccttcag ctgttatgaa agcagtactg tctatagaat      2460
     tttcgtttac tgtgatcaaa tgaaaaccgc ttgcgctata gagtttcaaa aaataattag      2520
     caccctgaaa acgtgaagtt tgatcagtaa tcaatggaag cggataactg tccgggatgg      2580
     tattattgtt aaactcacta tagtcaatat ggatacgatc tgaacgtcat acttctttac      2640
     taataaagct ggactttcga aaggagaaca gctcggccta atgatattca cgtgtaaccg      2700
     ttctttaact ctgtcgcgta taatgtcacg ttcatccgcc gacattctat atggacgccg      2760
     ctgtactgtg cgattcgaac caactcgaac attcgaacca atactagagt cgttggaaaa      2820
     ccaactatga aaaattctga atatcgacct aaggtttcta aaagtttcaa ttggtcacta      2880
     ccagtaaagg tcagctgaga tgtcagtcaa agtcaactca ctcacactat cgytattyac      2940
     tgaatttaca taaagattcc cgtcaaacaa aatgtcagtc agttatgttt actgtaaaac      3000
     cctgatttaa aatctcgcga caacaatatc ccaagagggc aatcgttaat cactatacaa      3060
     cacagaattt gtccggtact gtatactcgt gtttgaccaa taccggtcat agtaacaaca      3120
     ttactaaacc gtcgaccact aaatttaaca gaaaaacttt caactaacga gaattcagca      3180
     ccagaatcgt aaacgaaaca aattaattca cctttgtcct gtaccctacc ctttggaggt      3240
     tggacactgc atacgtccac acgccgcttc gtccacacac cgctcaccgc gcgctgcgcc      3300
     gtccccgctg ccatcgcttg gcccgccgcc gccttcgctc gtacaccaga tggcgatatg      3360
     acccggtttg ccacgcagaa gcacactaaa ggcctcgctg ccggctgcta caccgcttga      3420
     ttcgacgttg aagctacagg tgttcgtcac gtcgcatcga taggcttgct tctgcattcc      3480
     gctcacttat ggccagccat ttttccgchg ctcaaacact tcagtgttgt aaacgctata      3540
     cgttaaagcc gcgggtcaga ctgtgatatg tgagagagta cagtagccac agcaacctct      3600
     tctttgccca catcacaatg tccagtgatt tgtgagggta gcatgtcata ctctcgtacg      3660
     ctgtttgaga cagccacaaa gatgcttcac cttccagtgc cttacttaca gcaagctcga      3720
     gttgactgcc tctcggggag tttgtcaaaa gcacaagtca gccgttgcgc accacgatct      3780
     cgcgtccgtg tcttctttgt caggatcata agtgggtaac cacatatacc tccctgaatt      3840
     agcctcggtg tatacagggy ttcgaacata gcacgccagt ggttatctcc attgttctct      3900
     gtgccaacac cgatcgcact tctga                                            3925
//
ID   Gypsy-13_Hmel_LTR repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy;
KW   Gypsy-13_Hmel_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-358
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 358 BP; 94 A; 97 C; 82 G; 82 T; 3 other;
     tgtcggagtt gggtggattt ccctcgcaca tagttttgag tacccggtct actgtgggct        60
     tchgtggata atgttggcat gagtaaacac aatttgtgat attacgaatt aattacaaca       120
     ccgtaatcaa ttcacaagaa agcagctatc gctatcccag taggtagata cacagcacgg       180
     aacgcgggac agtttcagtg tcgtctgcac cggccgaccg ccaaacacaa agtgagtcga       240
     tgtccgtcgg ccacgcytcg actcgcccct tccataccar tgcataacac taactctgtc       300
     gagcgccaac agatggcgct ggcgttccgg aaccacctca gtactacaaa ttccgaca         358
//
ID   Gypsy-13_LH-I repbase;    DNA;    INV; 8542 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   24-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_LH_;
KW   Gypsy-13_LH-LTR; Gypsy-13_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-8542
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
CC   Positions [4743-5282] - Reverse transcriptase
CC   Positions [6326-6841] - Integrase core
CC   LTRs are 97% similar to each other. An insertion of REP-2_LH and
CC   a putative 6-bp TSD is excluded.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(7539..7910,7906..8541)
FT                 /product="Gypsy-13_LH-I_2p"
FT                 /translation="MIEAERSTFSTAPTTEPNASKMATQKECSLKVLDEQE
FT                 ERLKQEIKDLLLRKRKGLLAERRKKERIDKLMQLKYDVSNIPDDYTDSEGE
FT                 ENIEKFDKELAEIFGKQHPTVDNITMFNDKGEPIIKLNKTSFEMHSTLSIA
FT                 ECIKKPFAITYNFKDGKTTRTVHATWVSKIKDSVSETSVNPTKLNIPQTTQ
FT                 QNVEERLREILDINEESIPETEKTESTRESKNEETQKATKTQKRIEKELQE
FT                 ILENQRYMMPSTSSGITDQNRSCNKKRRIASIMQKLYKEQSSDDSDEARMR
FT                 YKSSKTRRHWKQEEIKQQKRITESPILGTRPSADQKMDTNGEGG"
FT   CDS           join(2592..5810,5675..6931,6913..7293)
FT                 /product="Gypsy-13_LH-I_1p"
FT                 /note="retropepsin, reveerse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MDKDQEEIAGKGGKVIHSPTRTLKSGKTLVFPREAQD
FT                 LRQEKQQITTKTSPETSTAREETINESFNERFKQIEDALVNVIKAIKTSDE
FT                 FRERREPRKPKRRVSGENNTTDSSSDEEAAVTGICLPRGGWLKNPFEDIKF
FT                 TGKSDAINPIRFLKKFESTAKYEGIKRSKQLHFFGKCMREQASTWWELQDF
FT                 TSISEAKEEFVKFYWGDDQQAHFREKLYTGRYKAAKNMRMSDYALNMAKQA
FT                 RTLNPPMNDKELIRCIKRHFDRDIAREIRSTTATTLMDLVYLLEEIQDEKE
FT                 TTSKMQTGEKRALQTNSTTKRADSGKSREQKPRYQDRYAKFNKPKVEPKAL
FT                 PWHTNLEESRRGKTTQNPKVEFPASNSDNDSKKPNVKSKTERKHQGAKAKT
FT                 TAEEKRASQNKRVSTIKKGKEPKVLLNSQNENKNKEDTQPQYSDDEEIQED
FT                 SPQTHARDKPPQYSDDEEIQEENPKTNDQKDIKYPKKVEPKEMAGKNSKNI
FT                 TILRTRELVNELDETDDSASKPIANDPLILIKIGKTKIEALIDTGAQVLAI
FT                 SKETLDKLIKNQESIQTIPIKKCNLKGAFGEKGIAVPCKAQLEFDIASTNI
FT                 LQQFYVVEKLSYPIILGNDMLKKHAATIEYKPDKFKISFDDTIRKINHYKM
FT                 NAIKTKLEGGANLDDILKKHSEVFNEEIGRIKNYKHTIEMNIESGFKKKTY
FT                 PIPEKHRETVRENIRDWERQNIIKKASTQYINPLVAVVKKSGDIRICLDAR
FT                 ELNKRMKNDHAQPSTIEEIFQKMGNRKFFTTLDVTKAFWQIPLAKESRKYT
FT                 GFLFDNQSYVFKRMPFGIKTAGASFTRAMNKTLNEEAIDFVIVYLDNILIA
FT                 SNTKEEHLYHIDYVLKKLKKAGFRLNKDKCEFMRNQIKFLGHTFDEISANI
FT                 NEDTRLAIKNFKKLANKKGVQAFLGLVNWDRRFIKNLAKLTKPLENLLKKD
FT                 VKFQWSDDHQRAFNDIKIAFDEAPTLYLTKPNLRFGLYIDASKTGLGARLY
FT                 QFDEDDKKYTIGYASRSLKSAEKNYTITELECLALVFALKKWHTILKGLEG
FT                 WEERFAFTPTIKRYNLKKLYNHRIGMPSVSIRTQKMAYNPQRIGRMGRKIR
FT                 VHTDHKAIQFVSSCAQSSERIARWLSFMQEFDLEIIHIPRRENNIADTLSR
FT                 QHPTRNSTDQEDGNPKICLILNHDDGSNSEEWTRMLRESQAADENLADSLE
FT                 EFPEKYHIREGLIRIDQGPQERIVVPDDASWNLIDLIHRYLVHFGTDKVKE
FT                 FVKRFFKINNLERIVKDVVASCNVCLATKYYTRPTRGLEYYKLRESKNKAI
FT                 SLDLFGPLPVTRNQNKYILVLLDQFSKLTKFYPLKNQKLDSIIDAIETKYF
FT                 QEVTIPEVILTDNGGQFITNRWKEFAEQSGFNVRRTSPYNPQSNPVERVMR
FT                 ELGKVIRAYFHKKQTQWDRILTRFEKIVNNTAHSSTGCNPKRFTPKITIKP
FT                 RTRSNAVSGRTRADEPGTKNRRALVNTKSVSKHLKRKAAVRKIQADKHQEA
FT                 EEYEIGTKIWIKLHRRSDASRRLTRKIHFVYDGPYVIQQIIRRNAYLIADT
FT                 EGQPIGVYNSRQLRPHKDPTLKYTQEEKMPSLNVITVVPEAILKKWTRNHR
FT                 S"
XX
SQ   Sequence 8542 BP; 3313 A; 1743 C; 1784 G; 1702 T; 0 other;
     cgcttcccga gtataaaaag gaagccggaa taagccagta agttagttga gttcagccag        60
     tccgagtggc tgaagctctc aatgagagca tcgcattttt atccgacgcg atcatgactc       120
     aagtgggtca tcgcgattaa tattaagtgc gcgctacatt gtataatcat gtgcggcata       180
     accagcgcag actggattgt tataaatcaa tacacaaata agtgttctaa tttatttttt       240
     aataaatttc aattttttaa tctatttaat taaaaatgtg gaaagtgtat gtgatttatc       300
     atccctccta taaacaatcc tcaatctcct tgagcgggat gagagaaggg gactgtacaa       360
     taaaaaataa acattaataa gttaaatgat taataatcat acttacctgg tggaagcagc       420
     agcgaatcca gaagcgggtg gaagtacagc acctgaaaat aaaaaagaga cacattacgg       480
     taaacctagt tactgcttga gacccagtgc gcgagtgcac aaattggatt actcaagaga       540
     tcatctccgg cggtttgcaa caccgacaca tgcagttcag agaactgaat gctgtgctgg       600
     aaggatgtct gccaggacgg gttgctgcca acaggcgccg acgagataga tggcaacagg       660
     accaaggaca ccggatacct tgctaattaa aggttaaatt agctggcgac cgttgaaatg       720
     agaagcgtta ttctacaccg gtgagtgata gagtgatatt ttgtcatgaa gttgctttgt       780
     ccggttacag tagagagcga ctatcatcga tagtttttca cgggagtctg tagcggggcc       840
     gcccgtaggt cgaaacgcag ggcgagccaa agataaaccc gcaaaatggc gaccgtgaca       900
     ggacgtccgt cgcatataga aaataaaatt agttacgcgg cgcgatgcaa aaacggactt       960
     gtaaaattaa aatcacgcga agaaaagttc ctgttgcacc catacaaaat ggcggctgtg      1020
     acacgacgcc cgtcgcatat aaaaaataaa atcagtgcgc ggcgcggtgc aaaaaacgaa      1080
     ctttgccgat taaattaacg cgaatcagag acaatcatcc agtcacatag gcgcgaatca      1140
     gcgatcctgt ggctaggacg cccgtcgcat aaaataaaat aaaataaggt gcgcggcgtg      1200
     gtgcaaaaat gaattttcga aataaaatcg cgaaaagaca tattccggtc acaatcacca      1260
     cgaaaaggta ccgtgactag gatgcccgtc gcattaataa aataaaatgg tgcgcggcgt      1320
     ggtattaaag tacgaaattt cgcaaataaa cactggaaag tgcaaaattt tttttttaca      1380
     aaacacccgt cgcttgaaca aaacaaaatt aagtgcgcgg cgcggtaaac tgttaaaaca      1440
     ttaattgtac gaaaatcctg ttacacacgc aaagcagcga cagtgatagg ttacccgtcg      1500
     caaaataaaa caaaattagt gcgcggcgcg gtgtaataag caagtagcac gcgaaaaaag      1560
     actaaaacgt cacgtttcgc ggcgtgataa tcatccgcgc gaaagaaaat cgtgattaag      1620
     acactcgtcg caatataaat taaaagcaat agtgcgcggc gcgaaaaaac acaattgcaa      1680
     cgccgtaatg agcgttagca atcaaaagtc atcagtacgc aaagagacaa agagtctcaa      1740
     agcggaaacg gcgatgacag acaaaataac ggtatattgt aattaaccat aagatggcga      1800
     gcgatataaa ctgtaaaatt attattaata taagagagaa aaccgttgcg acaataattc      1860
     ttaataattt agcagcgcta cgtagttata aaatttcgtt tatccgtcgc ggtagaaaac      1920
     aaagtacaat gcggcgcgtt agtaaagcga aaaaacaaca tgatatttat gttaaaatag      1980
     cggcgtcgta ccacaaagaa cgaaagccaa cggctatagc ataagaaata taaaaggcga      2040
     ccggcacata aacacggccg gcgactggtt cgtaaatacg accattgaaa taagcggcga      2100
     actcggtatc aaagaaatgc cgaacaagcc cattcagcct ttgaaacatt gtctaaaaag      2160
     ccaacgacga aagtcggtaa agtagtaacg tcggtaactt aggtcgataa ctagtaggta      2220
     gggaaagcta ttgtcgataa atgcctctgg taatcgataa attttaataa ataataaaag      2280
     tactgtcaaa attaagaatc ttaaaagagc gagtggtcaa taataccgaa aaattttttt      2340
     ttaaatcaaa ataattcttc aacttaataa gtctcgaata ggcgataaaa actggatctt      2400
     tcacgatttc agactgccaa ttaatatttc aagcataagt gtaaatcggt taattatcaa      2460
     aatattaatt cgacttcgcg aagttcatac cgggcaaaac aattgggtcc aacgagattc      2520
     caagccataa aacgcgtact gacaagaagt ttaaatcgga taatatttaa acggtccaaa      2580
     aacaatccaa aatggataag gatcaagagg aaattgccgg aaaaggagga aaggtgatcc      2640
     attcgccgac aagaaccctg aaaagcggta aaacactcgt atttccacgc gaagctcaag      2700
     atcttagaca ggaaaaacag caaataacca ccaaaacatc gccagaaaca agtaccgcac      2760
     gtgaagaaac gataaacgag tcatttaacg aacgctttaa acaaatagag gacgcgcttg      2820
     tgaacgttat taaagcgata aaaacttccg acgagtttcg tgaacggcgt gaaccgcgaa      2880
     aacctaaaag gcgagtaagc ggcgaaaaca acacgaccga ctcaagctcc gacgaggaag      2940
     cggcggtaac gggaatttgc ctacctcgag gcggttggct caaaaatcca ttcgaggaca      3000
     tcaaatttac gggaaaatcc gatgcgataa acccaataag attcctcaaa aagttcgaaa      3060
     gcactgcaaa atatgaaggg atcaaaagat ctaaacaact tcatttcttc ggaaaatgca      3120
     tgcgagaaca agcttctaca tggtgggagc tacaagactt cacgagcata agtgaagcaa      3180
     aagaagaatt tgtaaaattc tattggggag acgaccaaca agcacatttc cgcgaaaagc      3240
     tctataccgg aaggtacaaa gccgcaaaaa acatgcgcat gagcgactac gcgttaaata      3300
     tggcaaagca ggctcgtact cttaacccac caatgaacga taaagaactc atcaggtgca      3360
     tcaaacgaca cttcgataga gatatcgcga gagaaataag gtcaacgacg gcaacaacgt      3420
     tgatggatct agtctaccta ttagaggaaa tccaagacga aaaggagaca acgtccaaaa      3480
     tgcaaaccgg tgaaaaaaga gccttgcaaa caaactcgac aaccaagaga gcggactctg      3540
     gaaaaagccg tgagcaaaaa ccgcgttatc aagacagata cgcaaaattc aacaagccaa      3600
     aagtcgaacc aaaagctcta ccttggcaca ccaacctaga ggagagcaga agggggaaga      3660
     caactcagaa ccctaaagtg gagtttcccg caagcaacag cgataacgac tctaaaaaac      3720
     ccaacgtaaa atctaagacg gagcgaaaac accaaggtgc gaaagctaaa acaaccgccg      3780
     aagagaaaag ggcgagtcaa aacaaaaggg tctctacgat taaaaagggg aaagagccta      3840
     aagtactcct aaattctcaa aatgagaata aaaataaaga ggacactcaa cctcagtact      3900
     ccgatgacga ggaaattcaa gaggatagcc cgcaaactca tgcaagggac aaaccacctc      3960
     agtactccga tgacgaggaa atccaagagg aaaatccgaa aacaaatgat caaaaagata      4020
     tcaaatatcc gaaaaaggtc gaaccaaaag agatggcagg aaaaaattcc aaaaacatta      4080
     ccattctcag aacgcgagaa ctcgtaaatg agctcgacga aacggacgat agcgcatcga      4140
     aaccaatcgc aaacgatcca ttaatcctga taaaaattgg gaagactaaa atagaagccc      4200
     tgatagacac aggtgctcaa gtattagcga tttcgaaaga aacgctagat aaactgatca      4260
     aaaatcagga aagcatacaa acaattccga taaaaaaatg caacctgaaa ggtgcattcg      4320
     gagaaaaagg catagcagta ccatgcaaag cccaattaga atttgatatc gcaagcacga      4380
     acatacttca gcagttctac gtcgtggaaa aattgtccta cccgataata ctcggcaacg      4440
     acatgctaaa gaagcacgcg gcaacaatcg aatataagcc tgataagttc aaaataagct      4500
     tcgacgatac gattcgaaaa attaatcatt ataagatgaa cgccataaaa accaaattag      4560
     aagggggcgc gaatcttgat gatattctaa agaaacatag cgaagtgttc aacgaagaaa      4620
     tcggtcgaat aaaaaactat aaacacacga tcgaaatgaa catagaaagc ggtttcaaga      4680
     aaaagacgta tcccataccc gaaaaacaca gggaaacggt acgcgaaaat atacgcgatt      4740
     gggaacgaca aaatataatc aaaaaagcga gcacgcaata cataaacccg ctcgttgcgg      4800
     tagtaaaaaa gtctggagat atccgtatat gcctagacgc gagagagctc aacaaacgta      4860
     tgaaaaatga tcatgcacag ccatctacaa ttgaagaaat tttccagaaa atgggaaatc      4920
     gaaaattctt cacgacacta gatgtcacaa aagccttctg gcaaatacca ttggctaagg      4980
     aaagtcgcaa atacacaggt ttcctgttcg acaaccaatc ctacgttttt aaacgcatgc      5040
     catttggaat caaaacagct ggagcatcat ttacgcgagc tatgaataaa actctcaacg      5100
     aggaggcaat tgactttgtc atagtctatc tagacaatat cctcatagcg tcaaatacca      5160
     aagaagagca tctatatcat attgattatg ttctgaaaaa actaaagaag gcaggattcc      5220
     gactcaacaa agacaaatgc gaatttatgc gcaaccagat taaattcttg ggccatactt      5280
     tcgacgaaat aagcgcaaac ataaacgaag acacgcgtct agccattaaa aacttcaaaa      5340
     aacttgcaaa taagaaaggg gtgcaagcct tcctagggtt agtcaattgg gatcgaagat      5400
     tcatcaagaa cctcgccaaa ttaaccaagc ctctggaaaa cctgctcaaa aaggatgtta      5460
     aattccaatg gagcgacgat catcaaagag ccttcaatga tataaagatc gcatttgacg      5520
     aagcgccaac gttgtaccta acaaaaccaa atttacgttt cggtttgtac atcgatgcat      5580
     cgaaaaccgg acttggagcg cgactttacc aatttgacga agacgacaaa aaatacacaa      5640
     tcggctacgc gagcagaagt ctcaaaagcg ctgaaaaaaa ctatacaatc accgaattgg      5700
     aatgcctagc gttagtattc gcactcaaaa aatggcatac aatcctcaaa ggattggaag      5760
     gatgggaaga aagattcgcg ttcacaccga ccataaagcg atacaatttg tgagctcgtg      5820
     tgcgcaatcg agcgaacgca tagcccgctg gttatcgttc atgcaggagt ttgacctgga      5880
     aataatacac atacccagaa gagaaaacaa tatcgctgac acgttgtcaa gacaacatcc      5940
     gacgaggaac tctacggatc aagaagacgg caatcctaag atctgcttga ttctaaacca      6000
     tgatgacggg agtaactcag aggaatggac gcgtatgctg cgagaatctc aagccgcgga      6060
     tgaaaaccta gcagactctc tggaagaatt ccctgagaag tatcatatcc gagaaggatt      6120
     gataagaatc gatcaaggac cgcaggaaag aatcgtagta ccagacgatg cctcgtggaa      6180
     tttaattgat ctgattcaca gatacctggt acatttcggt acggacaaag taaaagaatt      6240
     cgtgaagcgt ttctttaaaa ttaataatct tgaacgaatt gtcaaagacg tcgtagcgtc      6300
     gtgcaacgtt tgcctagcaa caaagtacta tacaagacct acgcgagggt tggaatatta      6360
     taaacttcgc gaaagtaaaa ataaagcaat atcgttagat ttatttggac cgttaccagt      6420
     cacaagaaat caaaacaaat acattttggt attattagac caatttagta agttaacaaa      6480
     attttatcca ctaaagaatc aaaagctaga ctcgataatt gatgcgatcg aaacaaaata      6540
     ctttcaagaa gtaaccattc cagaggtaat acttaccgac aatggcggtc aattcataac      6600
     caatcgatgg aaagaatttg ccgaacaatc gggttttaat gtaagacgta catcgccgta      6660
     taatccgcag agcaatcccg tcgaacgcgt aatgcgcgaa ctaggtaaag tcataagagc      6720
     gtatttccat aagaaacaaa cacagtggga tagaatactt acccgttttg aaaaaattgt      6780
     caataacacg gcccacagta gcacgggttg taatccgaag cgatttacac ccaaaattac      6840
     aattaagcct cgaactagat ccaacgctgt atccggaaga acccgagcag acgaacctgg      6900
     aacaaaaaat agaagagcgt tagtaaacac ctgaaaagga aagcagctgt gaggaaaata      6960
     caagcagaca aacatcagga agcggaagaa tacgaaatcg gcaccaaaat atggataaaa      7020
     ctacatagac gatccgatgc aagtagaaga ctaacacgaa aaattcattt cgtatacgac      7080
     ggaccgtacg taatccaaca aataatccgt agaaatgcat acttaatagc agacacggaa      7140
     ggacaaccaa taggagtcta caactcgaga caactacgtc cacataaaga tcctactttg      7200
     aaatatactc aagaagagaa aatgccatca ctcaacgtaa tcacagtcgt accagaagca      7260
     atcctaaaaa aatggacgag gaatcaccgt tcatgaggga aattaaaatg gaaatggacg      7320
     acgaagacga acaaaataac aaaatgaatg aaaccctaaa attaaacggg gaaaacaatt      7380
     ccgtactatc tacagcggaa gaaacattaa tgattgtcaa taacaaaccg atggtcatta      7440
     ataaacaaaa actaaagtaa tattacgagt ggaaaaactt tctatctcag aacgtgaatg      7500
     gttcgttcag cgtcaaccag gtggagcgga cagcgctgat gatcgaggca gagcgatcga      7560
     cattcagtac cgcgccaacc accgagccaa acgcatcaaa aatggcaacg caaaaagaat      7620
     gtagtctgaa agtactagac gagcaggaag aaagactgaa gcaagaaata aaggacctac      7680
     tgctcagaaa acgaaaagga ctactagcgg aaagacgcaa gaaagaacgt atcgacaaac      7740
     tcatgcagct caagtacgac gtctcaaaca tcccagacga ctacaccgat agcgagggag      7800
     aagaaaacat cgaaaaattc gataaagagt tagcagagat attcggcaag caacatccga      7860
     cagtcgacaa catcacaatg ttcaacgaca aaggtgagcc gataattaaa taaaacatcc      7920
     ttcgagatgc actcaacact gtcaattgcc gagtgtatca agaagccatt cgcgataaca      7980
     tacaatttca aagacggaaa aactaccaga acggtacacg cgacatgggt gtcaaaaatt      8040
     aaagacagcg tgtcagaaac aagcgtaaat ccgacgaagt taaatatacc gcaaacaaca      8100
     caacaaaacg tggaagaacg tttacgcgaa atcttggaca tcaatgaaga atcgattcca      8160
     gaaacagaaa aaacggaaag tactcgagaa tcaaaaaacg aggaaaccca aaaagcaaca      8220
     aaaacgcaaa aacgcattga aaaagagttg caagaaatac tggaaaacca gagatacatg      8280
     atgccgagca cgtcatcagg gatcaccgac cagaacagat cctgtaacaa aaaaagaaga      8340
     atagcatcca taatgcagaa gttatacaag gaacaatcgt ctgacgattc ggacgaagca      8400
     aggatgcgct acaaatcttc caaaacacgc agacactgga agcaggaaga aatcaaacag      8460
     caaaaacgaa taaccgagtc tcccattctc ggaacgagac catcggcaga ccaaaaaatg      8520
     gacaccaacg gagaaggggg aa                                               8542
//
ID   Gypsy-13_LH-LTR repbase;    DNA;    INV; 639 BP.
XX
AC   ADOQ01009871;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_LH_;
KW   Gypsy-13_LH-I; Gypsy-13_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-639
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01009871; Positions     649      11.
XX
SQ   Sequence 639 BP; 259 A; 104 C; 111 G; 165 T; 0 other;
     tgcagccggc atcaccactg cccgagaaac ggaaaacgga agaacgggta cagacgaaag        60
     ggtaacgggc gcaagtaacc caaatccaat aaaagtagtc ataagataga atagatgtac       120
     aatgttatat ttatcctaat aaattataat tttacatgtc aaacgacctc tgtaacctaa       180
     ttattacctt agacataaaa ttacaaaata agatataaaa taggtaaatc gcaacaagta       240
     gcggcaagcc tcgacaaata agtcgttaaa gttaagtatt ataaaataca ataaaaaggt       300
     aataattaca aatcggaagc ataactgtat gtattccata taaaaacaat caattatatt       360
     gataagcaaa ttattttgtt atacgcgcta gtcagcgaat tgtcagaatg cgatctgaca       420
     acgattaatt tattttagca tttacggtac attaaataca taattataaa cgtagtacat       480
     aagttaaatc taaaataaat aaagaaatac aaatagcatt aataatgtta ccgacatatg       540
     cccgaagacg gtaaccgaga aactcgtttt ctcattggag gattctggct tcgatagcaa       600
     ccagctctga ttggtcgacg aagtagagaa gggagcgca                              639
//
ID   Gypsy-13_LMi-I repbase;    DNA;    INV; 4569 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4569
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3383-3383 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(471..1868,1823..4555)
FT                 /product="Gypsy-13_LMi-I_1p"
FT                 /translation="MCRLLSAHYRPRTHVIAARVEFYRSHKKPTQSYRAWA
FT                 AELHGLSRRCMFITPTHKESYADDMVRDAILRLAPDREVRQRALQLENPTL
FT                 TDVLNIAQSFEVSRAAGDQIETWGDVAAVSQSGSAPLDCADVAFVRERPTR
FT                 RARGRKQATASRQARAAPHTPARAQRPFPSCPLCFVQHDRADCPKRWVTCH
FT                 SCKKKGHMASVCRSRPTEQDDEMDVNLVQNVHSPSPKLFVEVQIFDRAVTL
FT                 LVDTGASVSLLNYITYVRLGSPPLAAVNRSLRGYSRQRIPILGQFTASTAY
FT                 KSVVRPVTFLVVDDTAAANIFGLDAFNVFGFSIDDSVNLLSDSVPFSELDA
FT                 LCREFSSLFSGGLGCAVGFTAHITMKPTARPKFFRARQVPVALRDQLKAEL
FT                 DRLQDLQVLTPISSSEWATPLVIVKKPGGSLRICGDFKVTINAQSVIDSYP
FT                 MPRTDELLALLSGSHSFSHMITPCFTFWFPLFFSHDLAEAYLQLPLDDDTK
FT                 RLLVVNTPFGLYQYQRLPFGVASAPAIFQRYLEQLLRPVPGCVNYLDDIVV
FT                 TGASPHEHLQNLRALFSVLQAAGLRCNLAKSRFFQPSIPYLGFEVSSAGVR
FT                 PLPDRVAAVQSLPRPASVKDVQVFLGNIAYYHRFLPGAASVAHPLHRLLHK
FT                 GVPFAWSSECERAFCTLKRLLVSAPCLTAYVPGQHLVLATDASQHGIGAVL
FT                 AHKYPDGSERPIAYASKTLTATQQRYSQIEKEALAIVYALKKFHVYLYGVK
FT                 FHLITDHKPLVSLFHPTAALPDKAAHRLQRWALFLSRYNYEIHFRPTAQHA
FT                 NADTLSRLPAGPDPDFDREELLCFYLDEEAQATVDGFPITAPVLAKAVSSD
FT                 PVLRRVLHYIRVGWPDAPPRRASDPLRNYYSFRFRLSEWDGVLLLATDGQA
FT                 PRVLIPADLRSKVLQMLHEGHWGVSRTKTLARRHVFWPGIDGDITRLVAKC
FT                 SLCALQQAAPRASLSSWPQPRQPWERVHIDYAGPFLNSYWFFLVDAYSNFP
FT                 YIFRCHTMSTAVTIQSLSKVFALEGFPHTLVSDNGTPFTSSVFQDFCARLG
FT                 IRHITAPPFHPQSNGEVERFVRTFKAQMRKYVTSCSVDDAIIRFLMSYRFT
FT                 PAGERSPAELLHGRQPRTLFHLLLPQPPSVPTRPSGRYIPGSLVWARGFGR
FT                 HPRWLPGKVKSCLGRRLCTVDTAVGTLRRHWDQLRPRLPADSQAPPPTPPP
FT                 PGPVSPACSVPTSSGGPTSALRAVSARAPSAVRAPFPALAPVPAATFLSAG
FT                 SPPPSAPLTEHPAPDGGEGATASEAMDIQTPERTMTQPVSNETAPFLSPVL
FT                 GADGAPSSPVIASNIHRGTSHSWQRRSGHYRPYGVVPARRWQPEMDEASPM
FT                 DVAWVRLAPLDITP"
XX
SQ   Sequence 4569 BP; 805 A; 1296 C; 1209 G; 1258 T; 1 other;
     caattggcga cgaaggtggt gtttgaattg gcgtgtgctc cgtcgtggaa gatggtggac        60
     aacgaaggac tggctccagc ggactttcag ctgcccccgt ggggccaaat cctgcagcaa       120
     tcgttacaga ctgtggttga gtccgttcag cggttaacga cgattgtgtc gggtcaggcg       180
     gaccgttttg actccctggt gtcgcggttg ccgtcggctc ctcggccggc gtttgattcc       240
     agttctgtgt ctcccactac agtgtttccg cctccattct cggctttgac gattctttag       300
     aagattggga ctcttatgaa aaccggctac gtcaacattt ccttgcgttc ggggtgtccg       360
     acccggcgtt gtgtaaggct ttatttcttt cgtgggtctc cccccacatc tatcaacttt       420
     tgcgtcaatt agcccccctg caggaaccgg ctgctttgtc ttttgatgag atgtgtcgtt       480
     tgttgtcggc ccattaccgc ccgcgtacgc atgttattgc ggcgcgggtt gaattttacc       540
     ggtcgcataa gaaacccact cagtcctacc gggcgtgggc cgcagagctg cacggtctta       600
     gccgccggtg tatgttcatt actccgaccc acaaggagtc atatgccgac gatatggttc       660
     gggacgcaat tctccggctc gctccagata gggaagtgcg ccaacgcgcc ctacagctgg       720
     agaatcccac cttgacggat gttttaaaca ttgcgcagtc ttttgaagtc tcacgggctg       780
     caggggacca aattgagact tggggtgatg tcgctgcagt ttcgcagtcg ggctcggcac       840
     ctttggattg cgcggacgtc gctttcgtac gggagcgccc cactcgccgc gcgcgcggtc       900
     gtaaacaggc cacggcttcg cggcaggcgc gggccgcgcc gcacactccc gctcgcgcgc       960
     agcgaccctt tccatcttgt cctctttgtt ttgtacaaca tgacagggct gattgcccca      1020
     agcgatgggt tacatgtcac tcgtgcaaga aaaaaggcca catggcttct gtctgccgtt      1080
     cccggccgac tgagcaagat gacgagatgg atgttaatct tgtccagaat gttcactctc      1140
     cgtctcccaa actttttgtt gaagttcaga tttttgacag ggcggttacc ttacttgttg      1200
     atacgggagc ttccgtttct cttctcaatt atatcacata tgtacgactt ggctcgcccc      1260
     ctctggctgc tgtcaaccgt tctttgcgtg gctacagccg ccagcgcatt cctatcttgg      1320
     gtcaattcac ggcttccacg gcgtataaat ctgtcgtcag gccggtcact tttcttgttg      1380
     ttgatgacac tgcggctgct aacattttcg gcctggatgc ttttaatgtt tttggttttt      1440
     ctatcgatga ttctgtcaat ctcctgtcgg attcggttcc tttctcggag ttagatgctc      1500
     tttgtcggga attttcttcc ttgttttcgg ggggcctggg ttgtgccgtg ggctttaccg      1560
     cccacattac tatgaaaccg acggcgcgac ccaagttttt tcgcgcgcgc caggtgccgg      1620
     tggccctgcg cgaccaactt aaggctgaat tagatcgcct acaggacttg caggtcttaa      1680
     ctcccatttc ttccagtgaa tgggctacgc cactggttat tgtaaagaag cctggggggt      1740
     ctttacgtat ctgtggggat tttaaagtca ccatcaatgc acagtctgtg attgactcgt      1800
     accccatgcc tcgtacagat gaactccttg ctttactttc tggttcccac tctttttctc      1860
     acatgattta gcggaagcct atcttcagct tcctttggac gacgacacta aacgtctgtt      1920
     ggtcgtcaac actccctttg ggttatacca atatcagcga ctccctttcg gggtcgctag      1980
     tgccccggct atttttcagc gctacttaga gcagcttctc cgtccggttc cgggctgtgt      2040
     taactactta gacgatattg ttgtgactgg ggcctcaccc cacgaacatt tacaaaacct      2100
     gcgggcactt ttctctgtcc tacaagcagc tggtctccgc tgcaacctgg caaagtcccg      2160
     ttttttccaa ccttctattc cttatttggg gtttgaggtg tcttcagcgg gcgtccgccc      2220
     gttgccggat cgcgtggccg cggtacagtc cctgccgcgt cccgcatctg ttaaggatgt      2280
     acaggtcttc ttgggcaaca ttgcctatta ccaccgtttt ttaccggggg ctgcctcggt      2340
     agcgcatcct ttacatcgtc tgcttcacaa gggtgttccc tttgcctggt cgtctgagtg      2400
     tgaacgggcg ttttgcacgt taaagcgctt actggtttct gcaccttgtt tgacggcgta      2460
     tgttcccggg caacatttgg ttctggccac ggatgcgtcc caacatggca ttggagcggt      2520
     tttggcccat aagtatcccg atgggtcgga acgccccatt gcgtacgcat ctaagacgtt      2580
     gacggcaacc cagcaacggt actctcaaat tgaaaaggag gcattagcca ttgtgtatgc      2640
     tttgaaaaaa tttcacgttt acttgtatgg ggtcaaattt catcttatta ctgaccataa      2700
     gcccttggtg tctctatttc accctacagc agcgcttccc gacaaggcag ctcataggtt      2760
     gcaacgttgg gctctctttc tttcccgtta taattatgaa atccatttcc gtcccacggc      2820
     acagcatgct aacgcggaca cattatcgcg ccttccggcg ggtcctgatc ctgactttga      2880
     ccgagaagaa cttttatgct tttatttgga tgaggaagct caggctactg ttgatggttt      2940
     tcctattacg gcgccagtgt tggccaaggc ggtgtcgtcm gatcccgtgc tgcggcgcgt      3000
     ccttcactac attcgtgtgg gctggcctga cgcccctcca cgtcgggctt cagatcccct      3060
     ccgtaactat tattccttcc gttttcgcct gtctgaatgg gacggggttc tccttttggc      3120
     tacagacgga caggctccgc gggtgctgat tccggcggat ctccgttcca aagtgcttca      3180
     gatgcttcat gaaggacact ggggagtttc ccgcacgaaa acattggctc gccggcatgt      3240
     gttttggccc ggcatcgatg gtgacattac gaggctggtg gctaagtgct cgttgtgtgc      3300
     tttacagcag gcggcgcctc gggcgtctct ctcttcttgg ccgcagcccc gacagccgtg      3360
     ggaacgggtg cacatcgatt acgcgggccc cttcctgaac tcttattggt tttttcttgt      3420
     ggatgcttac tcaaactttc catacatttt tcgttgccat accatgtcca ctgctgtaac      3480
     tattcagtca ctgtctaaag tttttgcttt ggaggggttt ccacacacac tcgtttcaga      3540
     taatggcacc cctttcactt cttctgtttt tcaagatttt tgtgctcgtc tgggcattcg      3600
     ccatattacg gcccctccgt ttcatcccca gtctaatggc gaagtggaaa ggtttgtgcg      3660
     tacgtttaaa gctcaaatgc gcaaatatgt gacctcttgc tctgtggacg atgccattat      3720
     ccgtttcttg atgtcgtatc ggttcacccc ggcgggggaa cgcagcccgg cggaactgct      3780
     tcatggccgg caacctcgca ctctctttca tttgttgttg cctcagccac cgagtgtgcc      3840
     cacacggcca tcaggtcggt atattccggg gtcgctagtg tgggcgcgcg ggtttggccg      3900
     gcatcctcgt tggctgccgg gtaaggtgaa gtcgtgtctc ggccgtcgcc tctgcactgt      3960
     ggacactgct gtgggcactc ttcgtcgaca ctgggatcag ttgcgcccgc gactcccggc      4020
     agattcacag gcgccacctc caaccccgcc tcctccgggg cctgtttcgc cggcatgctc      4080
     cgtgccgaca tcttcggggg ggccgacttc tgcactgcgt gctgtgtccg cccgagctcc      4140
     gtcggcggta agggcgcctt tcccggcact ggcaccagtc ccagcagcta cattcctgag      4200
     cgccgggtcg cctccacctt cggctcccct cactgagcat ccggcaccgg acggggggga      4260
     gggagccacc gcttccgagg ctatggacat ccagacaccg gaaaggacca tgactcaacc      4320
     tgtgagtaat gaaactgctc cttttttatc tccagttctg ggggcggacg gtgcgccctc      4380
     atccccggtc attgcgagca acatacacag aggtaccagc cactcctggc aaagacgatc      4440
     aggacattat cgaccctatg gggtagtacc agcccgacgc tggcagccgg agatggacga      4500
     ggcatcgccc atggacgtag cctgggtgcg gttggcaccc ctggacatta caccgtgaag      4560
     ggggaggaa                                                              4569
//
ID   Gypsy-13_LMi-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-308
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3384-3384 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 308 BP; 56 A; 82 C; 100 G; 70 T; 0 other;
     tgtggtaacg cgcggcgcgt gtgtttggac ggcgcgccgc ccgttaccag aactggccgc        60
     tgtgcggcgc tggctgcact accgcgctgc accctgccgg ccgcgcggcg tttgagagag       120
     gcacgggaca gccggaacct tgcctcagtt acgtactgtg tgctgcgaac gtgtctccgg       180
     acatactact gactaggaca agagtgggtg ctcacggaca tatctgtgtg gacttcgatg       240
     ggacggctca aggtcctagc gacattttag ctggcatatt gtgcataggt gtgttattag       300
     tcataaca                                                                308
//
ID   Gypsy-13_MeUr-I repbase;    DNA;    INV; 4932 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4932
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3047-3047 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..4930
FT                 /product="Gypsy-13_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPRAARRKSRRETEFYDMDDDVVSTPEPTGCSTSAVQ
FT                 QPPSTITASDLASMMKSLHQAQADNFERLLMKVLEARPPTSPALTTDTSTS
FT                 LTIPAPGNFAACNARFGGMKDEFLDGFIDAVYAYKDCTNISDENALRGLSM
FT                 LLTNDAAVWWQGVKTTVSTWDEAIQHLRSAFGDGRPPYRIYVELFSKPQGA
FT                 HESTELFVAKARAQLARLPSGDLTEKVKCDMVYGLLHVNIRKRLRREEFCD
FT                 FGSLLQKARSIEESTKESTRADTSKGAAAATRAPQRSPAPVPAPARPSTHR
FT                 QRRRXSGSRRFTVVEPTEAAPRKDSFKFQSDQCQSKDNSSARTNSYNNTIS
FT                 CYGCGESGVTRRNCSKCNGNFSALDIVRQGTSTSSSNSGKPFTPVSNIHVT
FT                 SVAGTGPVSDXYSHATSPPRADSRLFTSLPRTVIQGEPGKRMYTRNEYKSV
FT                 LPRYSSVRQGVNNTNENNVSRSYGCNVNVNRYNNRDYRFPSRSRVNMSFSR
FT                 PNSKRNIIGKARVISGSDIPGREMEISEHGEFINCSSINSVHSVPRRPILG
FT                 IEILGVRGRALIDTAAKGTIVGSSLYALLKQHNQHFKSSSMRVKLADGSAP
FT                 TREMLCTTLDVCIKARTIRVECFVFPDAVDNDTLLGIDFLAAAGLEVNFAT
FT                 STWRFHGCKEKYPLEYEYPNNLPSCSAAEFLREDEGAMLSSHDREDLASLL
FT                 QRNNDVFEAGGEPTPYAEHHIDTGDHPPIAVPPYRLTPAKKQLMKTEIDKM
FT                 LKDGIIEECESAWTSPAVLVPKKDNNIRFCVDYRKLNAITKTDSYPLPLID
FT                 ELLQLTKRHCFMSSIDLKSGYWQVQVSPADRDKTAFVTPFGTYRFTRMPFG
FT                 LKNAPSTFQRLIDRFRAGSSLQGVVLLAYLDDLLIISEDFTSHLNDLQKVF
FT                 DRLRLFGLRANRAKCFFARPEINYLGHVITPEGIKPDSSKIDAILQMPSPK
FT                 NLKHLKSFLQTCSWFRKFIPNFSQEAQPLTMLTRKNEPWRWETQQQQAFQC
FT                 LKEKLTSAPILIQADYSKAFVLRTDASNYALGAVLLQEDDSEERPIEYASR
FT                 LLSSAEKNYTTTEKEALAVVWATDKFRGYLDGHLVVVKSDHQPLKWLLTLK
FT                 TPNGRLSRWAMKLQALDIRFEYTPGRANVVADALSRPQCDDENTDSCDVCG
FT                 VIIDLPSASSAEIRMEQLNDPEVSKILHGLEGNEAAVSQQWLDRGYITNRG
FT                 VLYRYIPESDYDQPQLVVPLSMREKILKENHDAPTAGHQGVERTYNRISRN
FT                 YYFVGMRRYIADYLKNCEECQRYKASNQKPVGLLQTPVLHQRGEVLAIDLF
FT                 GPLPEGEHGEKWVLLVEDTATRWVELFALTEATAEICAPILINEYFLRYGF
FT                 PRRIISDNGTQFISATMQQCMFILGISQSFIPLYHPEANPAERKNRDLRTQ
FT                 LSILVKNEHRMWPKFLASVRFAMNSAICSTTSASPAHLMFAREMRTPFEAR
FT                 HDLRAILDKENFLPQITPYLRRFLDNWDIVRDSVERQQDKRKLQADKTRQT
FT                 ADHQIGDLVFITTHLLSDASKGRTRKFMPKRDGPYRISKIVSPTTYEVTDL
FT                 DSNLLGKFHVSDLKPYHNKSGQVSVPVQARRLRGRPRRSRHITAEPPTGRF
FT                 GDSEGE"
XX
SQ   Sequence 4932 BP; 1330 A; 1106 C; 1204 G; 1289 T; 3 other;
     aaactggccg cccaacgagc gggcccaaag aacaacacgt gactttgtgt ttgtgaaaat        60
     gccgcgtgcc gcgaggcgaa aaagtcgtcg agaaacggag ttttacgaca tggatgatga       120
     tgtcgtgtcg acacctgagc caacaggatg tagcacgtct gcggtccaac agccgccgtc       180
     gaccatcaca gcgagtgacc tagcctccat gatgaagtcc ctacatcagg ctcaagctga       240
     taacttcgag aggcttctaa tgaaagttct cgaagcacgg cctccgactt cgcccgcgct       300
     caccacggac acgtcgactt cacttactat ccccgcgcct ggaaacttcg ctgcgtgcaa       360
     cgcgcgtttc ggcgggatga aggacgaatt tttagacggt tttatagacg cagtatatgc       420
     ctacaaagat tgcacaaaca ttagtgacga aaatgctctg cgaggtctat cgatgttact       480
     cactaatgac gcagcagtat ggtggcaggg agtcaaaacg acagtatcga cttgggacga       540
     agccatccag caccttcgaa gcgcgtttgg agacggccga cctccttatc gtatatacgt       600
     cgagctgttt tcaaagccgc aaggagcaca cgaatcaacg gaattattcg tggccaaggc       660
     ccgcgcacag ttagcgcgac tccctagtgg cgacctcacg gagaaggtca aatgtgatat       720
     ggtgtacgga ttactacacg tgaatattcg taaacgatta cgaagggaag aattctgcga       780
     cttcggttct ctactccaaa aggctcggag tatcgaggaa tctacaaaag agtctacgcg       840
     cgccgacacg tcaaagggcg ccgccgcagc tacccgcgck ccgcaaagat cgcccgcgcc       900
     ggtaccggca ccagcgcgac cttcgacgca ccgacagcga cgacgagsat cgggttctcg       960
     tcggtttact gtagtggagc ctacggaggc tgccccgcgt aaagactcct ttaaatttca      1020
     aagtgatcag tgccaatcaa aagacaatag tagtgcgcga acaaatagtt ataataatac      1080
     tatttcgtgt tacgggtgtg gcgagagtgg agtgacgcga cgaaattgtt cgaaatgtaa      1140
     tggtaacttt agcgcgctcg atatcgttcg tcaagggacc tcaacatcgt cgagtaacag      1200
     cggtaagccg ttcacgccgg taagtaacat acatgttaca tctgtggctg gtactggacc      1260
     tgtgtctgac wattattctc atgctacgtc gcccccacgg gccgacagcc gtttgtttac      1320
     atcgttacct cgtactgtta ttcaggggga gcctggtaaa cgcatgtata cgcgtaacga      1380
     atataagtca gtgcttccta gatatagtag tgttagacag ggcgtaaata atacgaacga      1440
     aaataatgtt tcacgtagtt atgggtgcaa tgtaaatgtt aatcgttata ataatcgcga      1500
     ttatcggttt ccatcacgta gtagggtgaa tatgagtttc tcgagaccga attcgaaaag      1560
     aaacataata ggtaaggcaa gagtaatatc cggaagtgac ataccgggta gggaaatgga      1620
     aatatccgaa cacggggagt ttattaattg ttcgtcgata aattccgttc atagtgtacc      1680
     gcgacggcct attttaggta ttgaaatttt aggagtccga ggaagggctt taatcgatac      1740
     tgcggccaaa ggtactatcg tcggttcctc actctatgca ttgctgaaac aacataatca      1800
     gcacttcaag tcgagttcga tgcgtgttaa acttgccgat ggttcagcgc caacgcgcga      1860
     aatgctatgt accactctgg atgtatgtat aaaggctaga accattagag tggagtgttt      1920
     cgtatttccg gatgccgtcg ataatgacac acttttaggt atcgactttc tagcagcggc      1980
     tgggttggaa gttaatttcg ctacttccac atggcgtttt catggatgca aggagaagta      2040
     tccattggag tatgaatacc ctaataatct tccgtcttgt tctgctgctg aatttttaag      2100
     agaagatgag ggagcgatgc tgagctctca tgaccgcgag gatctagctt ctctgttaca      2160
     gcgcaacaac gatgtcttcg aagcaggggg agaaccaacg ccatatgctg aacaccatat      2220
     agatactgga gatcatccgc ctatagcagt tccgccttat cgccttacgc ctgcgaaaaa      2280
     gcagttaatg aaaaccgaga ttgacaaaat gcttaaggac ggtatcatcg aggagtgcga      2340
     atctgcttgg acctctccag cggttttagt ccctaagaag gataataaca tccgtttttg      2400
     cgtagactac cgtaagttaa acgctattac taaaaccgat agttatcctc ttcccctcat      2460
     agatgagctt cttcaattga caaaacgaca ttgttttatg tcatctatcg atttgaaatc      2520
     tggctattgg caggtgcagg taagcccagc tgatcgcgat aaaaccgcgt ttgtgacacc      2580
     gtttgggaca taccgcttta cgcgtatgcc gttcggcttg aagaacgcgc catccacgtt      2640
     tcaaaggttg atcgatcgat tccgtgctgg ctctagttta caaggtgttg ttctcttagc      2700
     ttatctagat gatctgttga ttatctcgga ggatttcact agccatttaa atgatcttca      2760
     gaaagtgttc gacagattgc gtctcttcgg tttgcgggcc aatcgtgcaa aatgtttctt      2820
     tgctcgccca gagattaatt atcttggcca tgtcatcact cctgaaggta tcaaaccgga      2880
     ttcctcgaag attgatgcaa tcctgcagat gccgagtcct aagaatttga agcatctgaa      2940
     atcttttcta caaacatgct cctggttcag aaaatttatt ccgaattttt cccaggaagc      3000
     ccaacctttg acgatgctta cgcggaaaaa cgagccttgg agatgggaga cacaacagca      3060
     acaagctttt cagtgtctga aagaaaagtt gacctctgca cctatcttga ttcaagcaga      3120
     ctactccaaa gcatttgtgt tacgtactga tgccagtaac tacgctttag gggcggtgct      3180
     gttacaggaa gatgattctg aagagagacc gatcgaatat gccagtcgtt tattgagttc      3240
     tgcagagaag aactacacca ccactgagaa ggaggcgtta gcggttgttt gggccacaga      3300
     taagtttcgt ggttatttgg atggtcatct tgttgttgtg aaaagtgacc atcagccgct      3360
     caagtggttg ctgactctta aaacgcctaa tggacgtctc agtagatggg ctatgaagtt      3420
     acaagcccta gatatccgtt tcgaatatac tccaggtagg gcgaatgttg tggcagacgc      3480
     cctcagtcgt cctcagtgtg acgatgaaaa taccgatagt tgtgacgtct gtggtgtcat      3540
     tattgatcta ccgagtgcta gttccgctga aatccgtatg gagcaactta atgatcctga      3600
     agtctcgaag attttgcacg gtctagaagg aaatgaggct gctgtttcac agcagtggtt      3660
     ggacagagga tatattacca accgaggggt gctgtaccga tatatcccgg agtctgatta      3720
     tgaccagcca caactcgtcg tgccactttc catgcgtgaa aagattctta aagaaaatca      3780
     tgacgctcca acagctggtc atcaaggagt ggagcggacc tataatcgca ttagtcgcaa      3840
     ctattatttt gttggaatgc gaagatatat tgcagattac ctcaaaaact gtgaagagtg      3900
     ccagcgttac aaagcttcca accaaaagcc tgttggactt ttacagaccc cagtcctcca      3960
     tcagcgtgga gaagtacttg ccattgattt gtttggaccc ttaccagagg gtgaacacgg      4020
     cgagaaatgg gtactcttag ttgaggacac cgccaccagg tgggtggagt tgtttgcgtt      4080
     gacggaagcg acggcggaaa tatgtgcgcc tatacttatc aacgaatatt ttctaagata      4140
     tggttttcct cgtcgtatca tatccgacaa cggcactcag tttatatctg ccaccatgca      4200
     gcagtgcatg ttcatcttgg gtataagtca aagttttatt ccattgtacc acccggaggc      4260
     gaaccctgcc gaacgaaaaa atcgggattt acgtacacag ctctcaatat tggtgaagaa      4320
     tgagcatcgt atgtggccca agttcttagc gtctgtacgt ttcgcgatga acagcgccat      4380
     atgttctacc acatctgcta gccctgcaca ccttatgttt gctcgagaaa tgcgtacgcc      4440
     atttgaagcg cgtcatgatt tgagagcaat attggataag gagaattttc ttcctcaaat      4500
     tacgccttac ttgcgtagat ttttagataa ttgggatatt gttagagata gcgtcgaacg      4560
     gcaacaggac aaaagaaaat tacaagctga caagactcga cagactgcag accaccagat      4620
     aggagattta gtttttatca ctactcactt attgagtgat gcttcgaagg gtaggactcg      4680
     taaattcatg ccgaagcgtg atggacctta tcgcattagt aaaatagtta gtcctactac      4740
     gtatgaggtc actgacttgg attcaaatct gttaggaaaa tttcacgttt ctgatttgaa      4800
     gccttatcat aataagtctg gtcaggtctc agttccagta caggcccgac gccttcgtgg      4860
     acggccccgt cgttctcgtc atataactgc cgagccacct acgggacgtt ttggtgactc      4920
     ggagggggag ga                                                          4932
//
ID   Gypsy-13_MeUr-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-253
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3028-3028 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 253 BP; 66 A; 64 C; 56 G; 67 T; 0 other;
     tgtaacgaac gccgacaacc gcgatgtttg cttgaaaaga aacgtgcgtc cggccgcccc        60
     tccctcgcgc gctcggccga tccgacacac agggattccc gctcgctacc gtacgtaaaa       120
     aacatgtccg cgccgtctct attcttgctt ttattgttat tttgtaatga gagaaaagta       180
     attaaagaat cgatgttatt agtgcgtgtt gtactttgtt aagaagcccc atcgaaaata       240
     agagtccgtc ata                                                          253
//
ID   Gypsy-13_MoPha-I repbase;    DNA;    INV; 5058 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5058
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1093-1093 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           73..975
FT                 /product="Gypsy-13_MoPha-I_1p"
FT                 /translation="MSTTHSPRKTRSQQQAASSAETSAMEAVLLELQQMRE
FT                 ERRRERQEQQNFRAEMEARFVEREAAFRRMEERLNDTQLSRPNNISASEAP
FT                 TDAARVDFLSGRGNASGDRASFSLRVKTDTYDGTVPLREFLSQFSFISRAN
FT                 GWDEASQTVALASCLRGKARSVLDGLSAEKDKLTFSELKSELELRFGESEL
FT                 AQNFYLQFTNRKLLPGEDYATLGADLERLSRKVYPNCPHEMRDKVACAQFV
FT                 AALSDGFVKRTLQVEGISSLRIAIERARTLKFINENSFARKPERQGSGNSG
FT                 DRGAGSIRA"
FT   CDS           1031..4444
FT                 /product="Gypsy-13_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GREKQGTEKRGMLVMRKFGALSCGVSFSAEGKLNFAE
FT                 LRGAGSAGGRRAPERGGAGASRELFLGSFNAADRERFCFRGKLNEKSCCFK
FT                 IDTGSDVSVLSANLAASFEQERIKFCNLKYPTGERVPVTSRVTASVRLGKF
FT                 CVVLRFYVAEIGEDCILGADFLSETGIFVGLFEDALGLTKSEAGERGLVCS
FT                 RIENCSAGLPDFLKEIYEQSSVDLENTQKEIFSDFLYEFCDVFTENIVAGN
FT                 CDILYHDIKLCDSSPIKQVPRRVPIHLQTEVNKILEEMKVQKVIEESNSPW
FT                 MSPVVLAKKKDGSIRFCVDFRKLNEITIKDSYPLPRIDSILDCLAGNLWFC
FT                 TLDLRSGYWQVRLNPKDREKTAFSLGNGLWQFTVMPFGLCNAPATFERLME
FT                 KTLKGLISRICFVYLDDVIVFGKDFKEMMENLKKVFSRFQSANLKVNPKKC
FT                 VFLKKEVKYLGHVISAEGVATDPDKISSVKLWPLPKTRKQVRSFLGFCSYY
FT                 RRFVRNFSGIAKPLYKLTEENCKFFWSKECQDAFERLKSILTSPPILSFPV
FT                 GEGQFVLDTDASNHGIGAVLSQFQGEEERVIAYFSRVLSKTERNYCVTRRE
FT                 LLAVVDSIKSFHHYLYGRKFLLRTDHASLRWLMSFRNLEGQLARWLERLQQ
FT                 YDFDISYRSGKGHGNADGLSRLPCSEDSCQYCAKVEQREEICSQKVFGRLV
FT                 FAQGDVQEWRSAQLQDSNVSKLIRSKEAGRRPEWQEIASGEASLKIYWSYW
FT                 EMLELKEGVLYKRWISPSLQKNVYQIVVPRQKVQEILEEAHNSPTGGHFGV
FT                 NKTLQKIRKRFYWATCKKDVEEWCATCKICVARKGPTGKGRAPLQIYNVGA
FT                 PFERIQVDILGPLPISSQGNKYLLVVVDCFTKWPEAIPLKNKKASTVARYL
FT                 IEQVFSRHGIPLEVHSDQGRNFESQLFQEITTLLGIRKTRTTPLHPQSDGQ
FT                 VERQHRTILDFLAKFICETQKDWDRWVPLYLLAYRSSKHEATGLSPAEMYL
FT                 GQDLRLPLDLLRGSPPSFEEKEEVGYVSRLRDKXDLIHRSARQRLQIKSKN
FT                 AKSWYDRRTKQVRFEPGQKVWFFNPRREVGKAPKLQSPWEGPWVVVKKLGE
FT                 VVYCIRKPSSKKNKIVHADRLAPFLERKFL"
XX
SQ   Sequence 5058 BP; 1376 A; 945 C; 1371 G; 1362 T; 4 other;
     ttttgggggc tcgtccggga tcggacgagc gagcgagccg acgggagttt tccgacgtcg        60
     agaggaatcm aaatgtcgac gactcactcg ccgaggaaga ctcgctctca gcagcaggcg       120
     gcgagctcag cggagactag cgcgatggag gctgttctcc tcgagttaca acagatgcgc       180
     gaggagcgga gacgggagcg gcaggagcaa caaaatttcc gcgccgaaat ggaggcccgt       240
     ttcgtggagc gtgaggcagc tttccgacgg atggaggagc gactcaacga tactcagcta       300
     agtcgcccca ataatatttc cgcgagcgaa gctccgacag acgcggcgcg tgtggatttc       360
     ttgagcggga ggggaaacgc gagcggggat cgagcgtcgt tctctttaag agtaaagacc       420
     gacacttatg acgggacggt gccgctgcgc gagtttctct cacaattttc tttcatttcg       480
     cgcgcgaacg gctgggacga ggcctcccaa acggtggccc ttgcgtcatg tttgcggggg       540
     aaagcgcgtt cagttctgga tgggttgagc gcggaaaaag ataaattaac gttttcggaa       600
     ttaaaatctg aattggaatt gcgcttcggt gaaagtgaat tagcgcaaaa tttttattta       660
     caattcacta atcgtaaact tctcccggga gaagattatg ccacattggg cgcggatctt       720
     gagcgccttt ctcgaaaagt atatccgaat tgtcctcatg aaatgcgcga taaagttgct       780
     tgcgctcaat tcgtggctgc tctgtcggac ggtttcgtta aacggaccct ccaagtagag       840
     gggatatctt cgctcagaat agcgattgag cgggccagaa cgttgaaatt tataaatgaa       900
     aatagtttcg cacgaaagcc ggagaggcaa gggagcggaa attcgggaga caggggagcg       960
     ggatcgattc gggcgtaaaa gaaaacaaga gcgcggagga gcgaagggaa gggaataaaa      1020
     aaaagaatga ggacgggaga agcaggggac cgaaaaaagg ggaatgctgg ttatgcggaa      1080
     attcggggca ctttcgtgcg gagtgtcctt ctcagcggaa ggaaaactaa attttgccga      1140
     gcttcgcggg gccggctcgg cggggggaag acgggccccg gaacgcggcg gtgccggcgc      1200
     gtctcgggaa ctttttctgg gaagttttaa cgcggcggac cgtgaacgtt tctgttttcg      1260
     gggaaaatta aatgaaaagt cttgttgttt taaaattgat acgggctcag acgtgtcggt      1320
     gttgagcgcc aatttggcgg cttcttttga gcaggaacga ataaagtttt gtaatttaaa      1380
     gtatcccact ggcgagagag tgccggtgac atctcgggtc acggcctccg tgcgcctggg      1440
     aaaattttgt gtcgttttac gattttatgt tgcggaaatc ggcgaagact gtattctcgg      1500
     agcggatttt ctttccgaaa cgggaatttt cgttggactt tttgaagacg ctctcggttt      1560
     gacgaagagc gaggcggggg agcgcgggct agtttgttct cgtattgaga actgctctgc      1620
     tggtctcccc gattttctta aagagattta tgaacagagt tctgttgatt tggaaaatac      1680
     tcaaaaagaa attttctctg actttttgta cgaattttgc gatgttttta ctgaaaatat      1740
     tgttgctgga aactgtgata ttctttacca tgacataaaa ctttgtgatt cttccccaat      1800
     aaagcaggta ccccgtcgtg ttccaattca tttacagaca gaagttaata aaatcctgga      1860
     ggaaatgaaa gtccaaaaag taattgagga atcaaatagt ccatggatgt ccccagtagt      1920
     tttggcaaaa aagaaggatg gttcaatccg tttttgtgtg gattttcgga aattaaatga      1980
     gatcacgata aaagattcct atcctcttcc aaggattgat agtattttgg actgccttgc      2040
     aggaaatctt tggttttgta cattagactt aaggagtgga tattggcagg taagattaaa      2100
     tcctaaagat cgcgagaaga ctgctttctc tttgggtaac ggtttgtggc agtttacggt      2160
     gatgcccttc ggtctatgca acgcccctgc aacttttgaa cgattaatgg aaaaaactct      2220
     taaaggattg atttctagaa tttgtttcgt ttatttggat gatgtgattg ttttcggtaa      2280
     agattttaaa gaaatgatgg agaatttaaa aaaagtcttt tctcgttttc aaagcgctaa      2340
     tctcaaggtt aatccgaaaa agtgtgtatt tttaaaaaaa gaagtaaaat atcttggaca      2400
     tgtaatttct gcagaggggg ttgcaactga ccctgataaa atttcatccg taaaactgtg      2460
     gccgcttcct aaaactcgta aacaagtacg tagttttctt ggcttttgtt cctattacag      2520
     gagatttgtt agaaattttt ctggaattgc taaaccttta tataagttaa cggaagaaaa      2580
     ttgtaaattt ttctggtcta aagaatgcca agacgcgttt gaaagattga aatctatttt      2640
     gacctcccca ccaattttat cttttccggt gggggagggc caatttgttt tggataccga      2700
     tgcctcgaac cacggtatcg gggcggttct ttctcaattt cagggtgaag aggaaagagt      2760
     gatcgcttat tttagtcgag tattaagcaa gactgaacgg aattattgtg tgactcgacg      2820
     ggagctgttg gccgtggtgg attctattaa atcttttcac cattatttat acgggmgaaa      2880
     atttttatta aggacggatc atgcttcgtt gcgatggctg atgtctttcc gaaatttgga      2940
     ggggcaactg gcaagatggt tggaacgcct gcaacaatac gatttcgaca tttcctatcg      3000
     aagtggaaaa ggacatggga atgccgatgg tttgtccaga cttccatgtt ccgaggattc      3060
     ctgccagtat tgtgccaagg tcgagcaaag agaggaaatc tgtagccaga aagtttttgg      3120
     acgattggtt tttgctcaag gagatgttca ggagtggcgg tccgcacagc ttcaggattc      3180
     taacgtttcc aagctgatac gaagcaagga ggctggaaga cggccggaat ggcaggaaat      3240
     cgcttccggg gaagcctccc tgaagatcta ttggagttat tgggaaatgt tggaattgaa      3300
     agagggagtt ttatacaaga gatggatttc tccgagtttg caaaagaacg tctatcaaat      3360
     tgtggtgcca cgacagaagg tgcaagagat tttggaagag gcacataatt ctcctacagg      3420
     tggacatttc ggtgtaaata aaactttgca gaaaattcgg aaaagatttt attgggcaac      3480
     gtgcaaaaag gatgttgagg aatggtgtgc gacctgcaag atttgcgtgg caaggaaagg      3540
     tcctaccggc aaaggaagag ctcccttaca aatttataac gttggtgctc ccttcgagag      3600
     aatacaagtt gatattctag gccctctgcc gatttcttcg cagggaaaca aatatcttct      3660
     tgtggttgtt gactgcttta caaaatggcc tgaagccatt cccctaaaga acaagaaggc      3720
     aagtacagta gctagatatt taattgaaca ggtgttttct cgacatggaa ttcctttgga      3780
     ggtgcattcg gatcagggta ggaacttcga atctcaactt tttcaagaga taactacgct      3840
     tttgggaatt agaaaaactc gaaccactcc tcttcatcca cagtctgacg gacaggtcga      3900
     acgccagcat cgaaccatat tggattttct agcgaaattt atttgcgaaa ctcagaagga      3960
     ttgggatcgc tgggtcccat tatatttgtt ggcttatcgt tcttctaaac acgaagctac      4020
     agggttgtct ccggcagaaa tgtatttagg acaagacttg cgtttacccc ttgatctttt      4080
     aagaggaagt cccccttctt tcgaggaaaa ggaagaggtg ggttacgtat ctcggttgag      4140
     agataaawtg gatctaattc accggtccgc taggcaacgt cttcagatta aatccaagaa      4200
     tgcaaaatct tggtatgatc gacgaaccaa gcaggtacgt ttcgaacccg gacagaaagt      4260
     ttggttcttc aatcctcgtc gtgaagtagg aaaagcgccg aaattgcaga gcccttggga      4320
     ggggccatgg gttgtagtga agaagctcgg agaggtggtt tattgtattc ggaaaccttc      4380
     ttctaaaaag aataaaatag tgcatgcaga tcgtttggct ccttttcttg aaagaaagtt      4440
     cctctaaaaa ataataatta aaataaaccg acagaaagcc cgtacctttt tkggggggga      4500
     ggatcttgaa tctttttaat tttaattatt ttaattcaaa gtttgtgttc tgttttgtgt      4560
     tttattattg tttcagtatt aatggagttc tgaataagga aagggatttc ggaattgaga      4620
     gccgtaagaa ggttaatttc ctggactgcc tctcccacgg tttttgaccg tggttttccc      4680
     gtgggacttg ggtgaatgcc gaggcagggg acggggagct ctttgagcga tgggtccacg      4740
     gaagatatcc cccccccccc gatcccgaag aaagaagaac gaagcgcaca agactcggcg      4800
     gaagaggagt tcggggacgg ctggaggaat acggactaag gaattctttg tgggagcctg      4860
     gccagcttca cgaagaagga agcccgtgtg gagaacctcc ctggaagaag aggactttgg      4920
     tggacgtggc ccggtaactc gctacagaag tacgaggagg gcaagaaatc gtcctggaac      4980
     cagagaaggt ccttttccag aagtgtcgca agctgctttt cggattgtcg ggacgacaat      5040
     ccagaagagg gggagcag                                                    5058
//
ID   Gypsy-13_MoPha-LTR repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-342
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1177-1177 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 342 BP; 70 A; 69 C; 102 G; 99 T; 2 other;
     tgttgcgtgc cgcgtgtcgc ccgatacatc cctgaagcgc cagtcagctg acggaccgat        60
     cgatattttc gatcggccga ttgccgggaa gaatttgtta ttaaaataat tgaattaaac       120
     ggctggttgc cgggaaatat ttgtaaataa gaattgtaga cagtttaacg tcggactcct       180
     gccgaggagg acgtgtcacg cgctttctct gtttgagctc agttgcaata aagtttttga       240
     gatccataga cggtttgatt ttccttcgac gcgagcgtgt gcgtggtgcg tggtgtgtgt       300
     gtgtgtgwgt gcgggagtgt ctttcggcgw tccggcgcaa ca                          342
//
ID   Gypsy-13_MSe-I repbase;    DNA;    INV; 4024 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4024
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 890-890 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4024 BP; 1079 A; 1035 C; 935 G; 975 T; 0 other;
     aagtggtgac cccgagccgt tcagcaagaa gagtcgcagc aatggcaagc gaagataagc        60
     aagattgtgg caccaaatgc gctgagtcat gccgcgtggg tatacgggta cccccattct       120
     accccgagaa accagcatta tggttcgctc agctggaagc acagttcgcg ctatctaata       180
     tcaccagtga tacgacaaaa tattatcaca cgatcagcca gttggatccg caatatgccg       240
     tggaagtcga agacgtcatt tctacaccac cagccgctgg caaatacgac aagcttaaga       300
     tagagctaat cagacgattg tcggattccc gggacaagaa gattaagcag cttcttagtc       360
     acgaagaact cggggatagg aagccatcgc agttcgcccg tcacctgcaa aaccttgcgg       420
     gaccaggagt acctgatgac ttccttaggt caatatggac gagccgtcta ccacaaacta       480
     cccagtctat aatcgcgtct caaccgaagg cgtcactgga ggagttagca gacttggcag       540
     accgaatcca tgatgtggtt acccccaaca tgcaagttgc atcgacatcg agtcaagtac       600
     cggccgacaa caacgatgtg gcagtcatgg acaagaaaat tgcaatgctg acggacgagg       660
     tccgtatgct ggctgccgag gttaggagat cccgtccgac acagagggca cgttcccaga       720
     ctcgtcgtcc acgctccggg actaggtcgc agtccaacta ccgccggtac ccccaatgtt       780
     ggtatcacca gaagttcggc gataaagcca gacggtgcat taaaccgtgc gacttcgcgg       840
     gaaaagtgcc gggcgatcga taatggcgac gaacgattgc ccaagtactg gtcgcctgtt       900
     tgttaaggac tctaggacta aagtgcaatt tttagtagat acggggagtg atttatgtgt       960
     gttcccggtc tccagaatta gggctcgacg cctccctgaa acggatttcg acttgtgtgc      1020
     cgctaacggc agcagaatta aaacgtacgg gtatattaac tttaatttaa acctagggct      1080
     gcgtcgtgac tttgtctgga gatttattat tgcggacgtt acgagggcga taataggcgt      1140
     tgatttttat gccattttaa cctcatggta gattgtcgta acaaacgact aatcgataac      1200
     acgactagtc ttgttgcagt ggcttcacct gcgtgctcac ctgacatcgt tccctcggta      1260
     aaggtaatca ctggtgagtc tgtatatcac gatatattaa aggaatttcc caacatcact      1320
     cgcccatccg gcacacatca cttgcccaaa cataacactt tacattttat tcgcaccaca      1380
     ccgggtcccc cagtaacatg tactccacgt aggctggccc cagataaatt aaagatcgcc      1440
     aaggaagagt ttgctactat gctccaaatc ggcatagcca gaccttccga ctcaccttgg      1500
     tcttctccat tgcatttagc ccctaagaag aacagcggat ggcgtccatg tggcgactat      1560
     aggatgctta acgcacggac cattccggac aagtacccta tccgccacat acatgacttc      1620
     gcctatagtc tttctgggtg taaaattttt tccaccatag atctcgtaaa ggcctataat      1680
     cagatcccat tgaaccctgc agacattcca aagaccgcaa tagcaacacc atttggactc      1740
     tttgaattcc tatttatgac ttttggtctt cggaatgctg ctcaaacctt ccaacgattt      1800
     gtagacgaga tgctgcgtgg gctggatttt tgttacgcat acttagatga ctttttagtt      1860
     ttctctagcg atgaggaaac ccacaagcgt cacctacgag aagtcttcac gagactaaag      1920
     gactacggca tggttataaa taccctcaaa aatgtatttt tggtgttcca gaggtaaagt      1980
     ttttagggta ccatattacc gctgaaggta ccacaccgct tccctctaag gttgaggcca      2040
     tccaaaactt cccagtcccg aagaccgcaa gagagctgag gagatattta ggtatgctaa      2100
     acttttaccg cagatttatc ccaaacgctg cccaacaaca agctcccccc taaatgcgtt      2160
     acttcagggt accgtaaaag gttcgcaacc cgtcacgttc actgaggttg agcaggaggc      2220
     ttttgaagcc agcaaagagg gcctatgtaa ggctgccttg ttggcccatc ctaatagcca      2280
     attcaaatta gggctagtca cggatgcttc tgatacggca ataggagcag cgttgcaaca      2340
     gttgggagaa gataactctt ggcaaccact tgcgttcttc tccaaaaagc tcagtccttc      2400
     ccaacaaaaa tattcacctt atgataggga actgctggca atttatgaag ccatcaaaca      2460
     cttcaggcat atggtcgagg ctagggactt tgtggtatat acagaccaca aaccactctg      2520
     ttatgctttc cacgcccgca aggagaactg ctcacccaga cagttcaggc acctggactt      2580
     tatatcccaa tttaccacgg atatcagaca catatccggt aaggataatg tggttgcaga      2640
     tacactatcc agaattgacg aaattgctca gccggttgac ttaaaccgct tggtaatact      2700
     gcaacaaaca gattccgaat tgaggcaatt actggatagt aacacatcct tacggctgga      2760
     aaagtcaagg taccgggttt ggacgctgaa ctgttctgcg atgtgagcac cagcactccc      2820
     cggccatatg tccctcagga gttgcgacac agtgtcttca agagcctgca ttcccttagt      2880
     catccaggag ccaaagcatc agccagactt gtggctgaga ggtttgtttg gcctggcgta      2940
     aggaaggact gtagaacttg gacgcaagct tgtctggctt gtcaaaaagc caagatatct      3000
     cgccacgttt cgtcacccgt cggcaccttt aaattgccag ggtcaaggtt cgcgcacatc      3060
     catatagacc tagtcggtcc tttaccactg tctcatggat atcggtattg cctcactgcc      3120
     gtcgataggt ttactcgttg gcctgaggtt atgccactgc gtgacattac agccgagacc      3180
     gttgccaatg cattagtaaa tgggtggata gcgcgtttcg gatgccctat gaatattgtt      3240
     actgaccgtg gcatgcagtt tgaatctgcg ctgtttaaac gtctgtcaga cctggttggt      3300
     ttccggcaca ggaccacgac ggcatatcat cctgcatgca acgggttagt ggagaggttc      3360
     cacaggcaat tgaaaactgc cattacttgc cacggcaatg acaattgggt tgaatccctc      3420
     ccactagttc ttctaggcgt ccggtcggcg tataaagaag acttacaagc ttcttctgcg      3480
     gagctcgttt acggcgagcc acttaggtta ccgggagaat tcttccactc ccaacctgac      3540
     aactccagtg acgtgacgga ttatctatct agaattcggt cgtttgcgag taaaattcgg      3600
     ccgacgcaag catcacgtca cggtaatcgt agtgtctttg tgtttaaaga tctagcgacg      3660
     gcatcgcatg tctttcttag ggaggaaatc aatcgcggtc gccttcaacc tgcttatact      3720
     ggtcctcatc aggtacttaa gagaagcgat aaggtgatca ctattctcct gaatggtaag      3780
     tcggtcacag tatccataga ccgcgttaag ccggcctaca tactgcgtga cccatacgca      3840
     gccaacacac atacagacac acacacaaac aaacatacac caaacacgcc acaagacaca      3900
     tcccaaccac tacagactcc cagtgacctt gacaccgaga agccgtgcgt cacgagaacc      3960
     aggtcaggcc gatctgtacg cctaccaaac tattatcgcc cgtaggacgg tctctcgggg      4020
     gtga                                                                   4024
//
ID   Gypsy-13_MSe-LTR repbase;    DNA;    INV; 570 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-570
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 939-939 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 570 BP; 171 A; 128 C; 83 G; 188 T; 0 other;
     tgtggcggca ttatccgcac aaaacatcag ttttataaac aaaattataa attaataaaa        60
     taaacttaaa actaataatc aatctgttta aacctaaata ctattgtaaa actaaactta       120
     aattaataaa cataaaatat actaaactat tatcattaaa ataaaaattg taaaataaca       180
     tttcaatgta caaatggtac aacattcgat atatatagcg gtcagctaac aatgccctac       240
     gtcacatgaa ccggtcggag cgggacgcgt acgctccgcc tgtcacgtag cccccggccg       300
     accgcagtca gtcagccgac gcatgcggcg cggatcgctc acgctctcgc tgtcgcttac       360
     gcttgttatt atttaaccgt tcatagtatt ttgttcgttt cgtttcgctg tagactttct       420
     ctttattttc tctccttctt tcttgtagtg tgtgtttatt ctactcttgt gtgaattgta       480
     ctcttactct gtacaaataa actctcttta cgtgtggact ttacttctat tacttctacc       540
     cgctacactc gagtctaaca catatctaca                                        570
//
ID   Gypsy-13_OrIn-I repbase;    DNA;    INV; 5401 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5401
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1554-1554 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..4266
FT                 /product="Gypsy-13_OrIn-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPAAVFLKIFEERPGPADNYSTFAANQINRLADVLRD
FT                 TTKDEIYIGLALAQIASVNSSARKLAFTTRIKTRDRLLQELQALPTKRPSD
FT                 GSSDQNNKRRFVPFRPAASRPNQPLSQHVGSSQQHRSFDVVCYRCGKRGHK
FT                 SNVCSQPPLRKEGDNRKTDEKKVGFVKTPRGSLRHNGESFPFYFDSGSECS
FT                 LMAINCAGKFNGENFYRNVNLNGLGSHVVTCKWQKLVKVEINGFPLTILFH
FT                 IVHGVDIFYSLIIGCDVLTSGFKMSIFSEKCVLSRCRTGDAGSGGSPGNSV
FT                 APLDKKDLPPLAAVSPESNVRVSACCDLFSNISTDLEDGGKDALLQILKKH
FT                 KPSFVDGIPTRRVTTGEFKISLVDPSKVVHRRPYKLCPELREVARSRIREL
FT                 EEAGVVRPSSSSYASPILLVKKKTGGYRMAVDYRMLNSNTIPDRFPLPLIA
FT                 DQIARLRGAKFFSILDMASGFHQIPVEKESIDKTAFVTPDGQWEFLAMPFG
FT                 VRNGPSVFSRAIMNALKELAFNFVVCYMDDVLIIAETIEQALSRLDIVLDV
FT                 LSSAGFSMQLEKCSFVVNKIQYLGFHVQNGEILPNSSKVEALTLMPPPSDV
FT                 HALRQFLGLASYFRQFIKNFSLIAAPLFKLTQNPKSRHSPISWTEEHERLR
FT                 QKLIAILTSEPVLTIFDPSAPIELHTDASSHGFAGILFNVIDSKPRVVSYF
FT                 SKRTTGPESRYHSYELETLAVVYAIKFFNNYLQAHHFTVVTDCASLRATQS
FT                 KQELIPRVQRWWAFLLSYDFTIKYRPSEKMQHVDCLSRNPVPSGVEGVKSE
FT                 SGPSRTGEPLVSVGEVEGGEFPLPFVDPVSSQDVISEESPADAASETPCEV
FT                 CDFESKTFRPFGKLRTKYSLPVSLTERIADKRVDFTTVSSDWLLAAQQEDP
FT                 FLQEIVAKLNSNSIADEVRNTYEIRSGILGRNIQRNNQTHWLPIVPRSLRR
FT                 SVVDNIHSSIFHLGVDKTLETLYRYYWFEGMSKYVKKYIENCLTCKTTKSD
FT                 SGPRQIELHPIPKTAIPWHTVHIDATGKLSGKNDAKEYVFVLIDAFTKYCL
FT                 LRHTKRIDGASAVRSLHSALDLFGPPTRIICDQGRCFASKEFKDFCASSNI
FT                 EVHFIATGASRANGQVERLMKTLRDMLAVAEQSDRSWQSSLGDIQLALNST
FT                 PHRVTKVSPMELMFGRVSKPLAMVSVHDDLIDRSPITLAEVRELAAQKMGK
FT                 QADVDKTRFDRGKAKIKPFAVGDLVLMKNEVRNQTKLDSAYKGPFRVLKLL
FT                 PNDRYVLRSLGQGHGRTFKFSHDRLRRAPCLDDGSSASSGSEDDRV"
XX
SQ   Sequence 5401 BP; 1251 A; 1182 C; 1399 G; 1569 T; 0 other;
     tcagaagtgg gattccactc cgccgccaat agtgatcggc gactcattga ggagctgttg        60
     ctcgagaacc gactcttaag agacagagtt cggagagatc accgccaacc tactgcagag       120
     gtgagtctgc ctgattttga acctaataaa tacaaggcca acccctcggc atggctgaag       180
     tcatgccgct atttgttggc ggaacaagag ggccgtcctt ttatcgccgc tctttcccga       240
     gctctcaagg gtccagcagc cgaatggttc accggcattc tgcatgaaga cctaaatttt       300
     gatactttcg aggccgcctt tcgcgcacaa tattgcggag atctgatgcc agctgctgtc       360
     tttcttaaga tcttcgaaga aaggcccgga ccggcggata attactcaac atttgcggct       420
     aaccaaataa accgtttggc cgatgtcctt cgggacacta ctaaagacga aatttacatc       480
     gggttagcac ttgctcaaat tgccagtgtt aacagcagtg ccaggaagct ggcgttcact       540
     acaagaatta aaacgcgtga ccggcttctc caggagctac aagctcttcc tacgaaacgg       600
     ccttctgatg ggtcatctga ccaaaacaat aaacgaagat ttgttccgtt tcgtcccgcg       660
     gctagccggc cgaatcagcc gctatcacaa cacgtcggat catcccaaca acatcgctca       720
     tttgatgtag tttgctaccg ttgcggaaaa agagggcaca agtcgaacgt atgcagccag       780
     ccgcctttaa ggaaggaagg agacaacagg aaaaccgatg agaaaaaagt cggtttcgtc       840
     aagacacccc gagggagcct tcgtcacaac ggtgagtcgt ttccatttta ttttgactcg       900
     gggtccgagt gctctcttat ggcaattaat tgtgctggaa aatttaatgg ggaaaatttt       960
     tatcggaatg tcaatttgaa cggtttgggg tcacatgtgg tcacttgcaa atggcaaaaa      1020
     ttggtaaaag ttgagataaa tggctttccc ctcactattt tatttcatat tgtacatggc      1080
     gtggatattt tttattcctt aataattggg tgtgacgtat tgacgtccgg ttttaagatg      1140
     tcgatttttt cagaaaaatg cgttcttagc aggtgcagga cgggtgatgc tggtagtggg      1200
     ggaagtccgg gaaattccgt cgccccctta gataagaaag acttgccacc ccttgcagct      1260
     gtttcgcctg agtccaatgt gcgtgtttcg gcatgttgtg acttgttttc aaatatttcc      1320
     actgacctcg aagacggggg aaaagacgca ctccttcaga ttttgaaaaa acacaaaccc      1380
     tcttttgtcg atggtattcc aaccagacgg gttaccacgg gggaatttaa aatttcccta      1440
     gttgacccct ccaaagtggt ccatcgacgc ccatataaat tatgtcccga gttaagggag      1500
     gtggcgcggt ccagaatacg tgagctggag gaggccggtg tcgtcaggcc cagttcctcc      1560
     agttacgcta gcccaatttt acttgtcaaa aagaaaaccg gaggttaccg tatggccgta      1620
     gattaccgga tgttaaattc aaataccatc cctgaccgat ttcccttacc cttgatagcg      1680
     gaccaaattg cgcgtctccg tggggctaag tttttttcaa ttttggacat ggcgagtggg      1740
     tttcatcaaa ttccagtcga aaaagaatcc atagacaaaa ccgcgtttgt caccccggac      1800
     ggtcaatggg agtttttagc catgccgttt ggagtcagga atgggccgag tgtttttagc      1860
     cgcgcgatca tgaacgctct aaaggagctc gcgtttaatt ttgtcgtctg ctacatggac      1920
     gatgtactga taattgcaga aaccattgaa caggccctca gccgactcga tatcgtccta      1980
     gatgttcttt cgtccgccgg cttctccatg caattagaaa aatgttcttt tgttgtgaat      2040
     aaaattcaat atctcgggtt tcatgttcaa aatggggaaa tcctcccaaa ttcctcaaaa      2100
     gtcgaggctt tgaccttgat gccgccacca tccgatgtac acgcgttgcg tcaatttctg      2160
     ggtctagctt cttattttag gcaatttatc aagaactttt ctttaatagc cgcccctttg      2220
     tttaaactga cccaaaaccc taagtcgagg cattcgccga tttcgtggac tgaagaacac      2280
     gaacgacttc gccaaaagct tatagctatt ttaactagcg agccggttct gacgattttt      2340
     gacccttctg cccctatcga gttacacact gacgcgagtt ctcacggttt tgccggaatt      2400
     ttgtttaacg taattgattc caaaccacgg gttgtgtcat attttagtaa gcggacgact      2460
     ggacccgagt ctcgatatca ttcctacgaa ttggaaactc tagcagtcgt ttacgctatt      2520
     aaattcttca ataattattt acaagcacat cattttactg tagtaactga ttgcgcgtct      2580
     ttacgggcta cccaaagtaa acaggaatta attccccgag ttcaaagatg gtgggcgttt      2640
     ttgctttcct acgatttcac gattaaatat cgtccttcag aaaaaatgca acacgtcgat      2700
     tgtcttagcc ggaaccctgt gccttcgggg gtagaggggg tgaaaagtga aagtggccca      2760
     agtcggaccg gggagcctct ggttagcgta ggggaggttg aagggggcga gtttcctctc      2820
     cctttcgttg accccgtttc gagccaagac gtaatttcgg aagaatcccc ggcggacgcc      2880
     gcgagtgaaa caccctgtga ggtctgcgat tttgaatcta agacttttag gccgtttgga      2940
     aaattacgta ctaaatattc tctccctgtt tcgcttacgg aacgtattgc cgacaaacgt      3000
     gtcgatttta caactgtttc ttcggactgg cttttagccg ctcagcagga ggaccccttt      3060
     ttacaagaaa tagttgctaa attaaattca aactctatcg cggacgaagt ccgtaatacg      3120
     tatgaaattc ggtccggaat tttaggtaga aatatccaac gaaataatca aacgcattgg      3180
     ttaccgattg tccctcgttc attacgacga tccgtcgttg acaacattca tagttcaata      3240
     tttcatttgg gagtggataa aacgctagaa actttatatc gatattactg gttcgaagga      3300
     atgtctaaat acgtgaaaaa gtacattgag aattgcctaa cttgcaaaac aaccaaatct      3360
     gattcggggc cccgccaaat tgagcttcat ccaattccga aaacagctat cccctggcac      3420
     accgtgcata tcgatgcgac gggtaaatta agcggtaaga atgacgctaa agagtacgtg      3480
     tttgttttaa ttgacgcgtt cacgaagtac tgtttacttc gacataccaa acgtattgac      3540
     ggggctagtg ctgttcggtc tcttcactct gctttggatc ttttcgggcc tcccacgaga      3600
     attatttgtg atcaaggcag gtgttttgcg tcgaaagaat tcaaagactt ttgtgcgtcg      3660
     tctaatatcg aggtccactt tattgccacc ggggcaagtc gagctaatgg ccaggtagag      3720
     cgtctaatga agacgttgcg tgacatgttg gcggtggcgg aacagtctga cagatcatgg      3780
     cagtctagct tgggagatat tcaattagca cttaattcga ccccccatag ggtgaccaag      3840
     gtatctccga tggagcttat gtttgggagg gtgagcaagc cattggccat ggtatccgtt      3900
     catgatgact taattgatcg ttcacctatc actttggccg aagtaagaga gctcgcggcc      3960
     cagaaaatgg ggaaacaagc cgatgttgac aagaccagat ttgatcgtgg gaaggcgaag      4020
     ataaagccat tcgcagtggg tgacctcgtt ctgatgaaaa acgaggtgcg aaatcagacg      4080
     aagttagaca gtgcatataa gggaccgttt cgggttctca aattgctgcc taatgatcgc      4140
     tacgttttgc ggtcgttagg gcaagggcac gggcgtactt ttaaattttc ccatgatcgc      4200
     ctcaggcgag ctccgtgttt ggatgatggc agctctgcat cttcaggatc ggaagacgac      4260
     agagtttaac acggtatgtt tcaaaggtaa tgatttttat gctttagtga gatggacgga      4320
     tttgtttatg cgcattgatt tttcctgtgg ctcttccgtg ctgcttctat gtcggcttag      4380
     tattgtgtca tgggaggcga ggctttgcag accgctcttg tgcttttatc ggccttgggt      4440
     tgagtggcgg ccttggcttc gtggcataga ggaacatcat gggggctttt tttttttttt      4500
     ttccttgcac cgctggaggg gtactgtggg gcggtcgttt ggccgacgac tttgctttgc      4560
     gggccctgat ggctgtgctg cggcctttcg tggagacgtg ggactggggc caccgagcga      4620
     tcacgatgcg gcccagggga cgctctgggc ttagcttttc ggaggttcgg ccactgggtg      4680
     atccggatgc ggtccagcat gtggctgggc ttagcttttc cgtgcccgga gggggctagg      4740
     tctttactga cgttcctcag cgttgtgccg gcctggacgc ttcacgttcg tgtctatggt      4800
     gttaaattgg tgcgcttgtg tgagtttaag gcttgtagag ccttcgtgag tcaggttgtt      4860
     atacctgtgg atttaaggct tgtagagcct tcgtgagtca ggttgttata cctgtggatt      4920
     taaggcttgt agagccttcg tgggtcaggt tgttatacct gtggatttca ggcttgtaga      4980
     gccttcgtgt gtcaggttgt catacctgtg tattttgggc ttgtagagcc ttggtgcgtc      5040
     aggttgttat acctgtttaa ggcttggagc cttggtgtgt caggttgtta tacctgtgtg      5100
     ttttgggctt gtggagcctt ggtgtatcag gttgttatac ctgtgtgtat aggcttgtag      5160
     agccttggtg cgtcaggttg ttatacctgt gtgtttgggg cttgtggtgc ctcggtgtgt      5220
     aaggcttgtg gtgccttggt gtgtcgggtt gttgtgcccg tgtttttcag gcttgttggg      5280
     cctgcggtgg ttcattcctg tgtgtttgaa ctggcgctag tgttgttttt gcgccttatt      5340
     tacgtttttt tctgtctttc agttggtgtt gccgaggacg gcaacctcgt caggttggcc      5400
     g                                                                      5401
//
ID   Gypsy-13_OrIn-LTR repbase;    DNA;    INV; 532 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-532
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1520-1520 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. This family is inserted in TATA.
XX
SQ   Sequence 532 BP; 147 A; 86 C; 122 G; 177 T; 0 other;
     tgtcggtatc ggatgaatga aggatcaact gtcggatgaa tgaaggatca acacttaaga        60
     agaagacgtt tattttatta ttttgatgtt cacatatttt gtaatgaatg aaggatgtga       120
     tacatatttt tgtaattatt ttaattatta tagggtaagc tttagtaagc tcatctttga       180
     accaaccccc gggctcgcaa tcgtagagga gacgaagggg tgttacccct caccaacccc       240
     cttcggagag gagtggggtg cgttttgaaa aaaaaacact ctcgaggacg gagaagaata       300
     ttccgttctc gagagctcgc gagtaaactg tcttgaattt tttgtcattt tataccatcg       360
     atattttgtt tttgtaaagt gcgtcgcccg ggggaagttc tacccttttg tataaaatca       420
     aagccatttt ggcgtttttg tgcgtgtctc cgtttaaaga ctgaataaac tgttttatgc       480
     gtttttgtgt ttttttgtat gaatcatgga agacggagaa tgtacaccga ca               532
//
ID   Gypsy-13_PBa-I repbase;    DNA;    INV; 4851 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-13_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4851
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 695-695 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~90% identical to the consensus.
XX
SQ   Sequence 4851 BP; 1297 A; 1080 C; 1247 G; 1224 T; 3 other;
     aagtggtgac cccgatttaa aaaattattg tactttttct tttattatat ttgataaaat        60
     cggtgatcgc gagtgtggtg taatcataaa gacagtcgag cgtgactttc gtgtgacctg       120
     agttttaaaa agaagtccgg ttaaccaaaa gacagaagcg agatgatgct aacgcgagat       180
     gagccgatcc agcaatcgac ggaacagcag caacattttt tagagaacaa caactgcaat       240
     tagagcaaga aagaagagcg ctcgaacagc aacgactcca actgacgcag cagcagcatt       300
     tattgcctgt gcagcatcta gcggcggagc aaccgcaggg tttcgtcgcg ccgggagccg       360
     aggtgagtcg ggtaggaatg agaatgcccg agttcactcc aactgaccct gaactgtggt       420
     tcagtatcgt agaccgcagt ttttcggccg ccggtatcac agtagacgcc acaaaattcg       480
     gttacgctgt caccgcgtta agtccgcgtt atacggtaga ggtgcgcgac attattatga       540
     acccgcccgc ggaaaatgcg tatgagactt taaaaacgga acttattaaa cgtcttagtt       600
     tgtcccaaga acataagact cgcagactcc tagagcacga ggagataggt gatcgcaaat       660
     cgtcgcaatt tttgcgtcac ttgcgtggtc ttgccggtaa cgtaatcggg gagaaagttt       720
     tgcgcacggt gtggttgagc cgtttgcccg cgttctacag ccacatttag cggctcgaac       780
     ggagagcacg ttggatcagt tagcggacgt tgcggatgcg atcatggatg caacgcgtgg       840
     gccagtgttt caagtcgcgg aggccgcgcg accatcattt cgagccgcgg aattagataa       900
     cgctatgacg atcgaagcga aattcaacct gcaactggaa caaatgcgtc tgtcgttgca       960
     acaagagatg gcggaacagc tgacagccat acggaaatcg atagaatcca tcggagtacg      1020
     cgacagaaat cgcggcagag atcggcggcg gtcgcgttcg cgmgggcgag gtcattcaga      1080
     gaatggcctg tgctggtggt atcattggaa attcgggcca aatgcaagac gttgcgagcc      1140
     accttgctcg gcaaaccagc agcaggcggg aaatgtagcg gcccatcgct aatggcgaca      1200
     agtgagaagg cccggtgacg cgtcgccttt tcgtgaccga tcgtaatacg agagtcagtt      1260
     tcctgatcga catgggggct gatttgtgcg tctatccgcg aagaatgata cgcggtccgt      1320
     tgaggagatc gacatacgag ctttcagccg cgaacggaac aattattcgc acatacggcg      1380
     tgaagtcgct gtcgttggac ttcggtttgc gacgtgtctt tgtgtggcgc ttcgtgatcg      1440
     cggacgtttc gagaccgata atcggagcgg attttttagc atattacggg ttgcttgtgg      1500
     atttgcgaga tcgtcgacta gtagacggag tgacaagcct gactgtccag gggcgctgtg      1560
     cgatgcaccc agcatcaaga cggtgacggg tacgtcgccg tatcacgaat tattaataca      1620
     gtttcctgac gtgacgagac cagaaggacg accgaaagag ctgaaacatg atacgcgaca      1680
     ttttatcaaa acgacgccag gtccgcctgt agcatgcaag ccacggagac ttgccccgga      1740
     acgtttgacg gctgcgaaga aagagttcca gcggatgatc gagctgggaa tcgctcgacc      1800
     ttccaagagt tgctggtcat cgcccttaca tctggtgccg aagaaggcga ggaatggaga      1860
     ccttgcggcg actaccgggc gctcaacgcg agaacagtcc cagactgtta tcctgtgcgc      1920
     catatccaag atttcgcaca gacgttagaa ggaaagaaaa ttttcacaat cattgacctt      1980
     gtaagagcgt accatcagat tccggttgcc gatgaagata ttccgaaaac cgattactac      2040
     gccattcggc atgtacgaat ttccatacat gtctttcggc ttacgcaacg cagcgcagac      2100
     gttccagcga ttcattgacg aggttttgca cggactggaa ttttgttacg cgtacattga      2160
     cgacatcttg gtcgcgtcag aatcggatga agaacatcaa accttgaaat tttatttgga      2220
     cgattgcaaa aatacggtgt atcattaacc ctggaaagtg tgtgtttggc cagccagaag      2280
     tggagttcct aggttatctg gtgacgggag aaggaactcg accattgcct tcgcgagtac      2340
     aggccattca ggagtttcag cagccgaaga cagcaaaaga attgaggcga tatttaggca      2400
     tactaaattt ctataggaga tttctgccta acgcagccga aatgcaagca ccgctcaatg      2460
     acctacttca taacaacata aaaggcaaac aactgattgt atggacatcg caagcacggc      2520
     aagcattcga gaagaccaga gagagtttag ccagcgccgc tttgctagca catccgaaag      2580
     gtaacgcgga actagcatta tttacagacg cgtcggatcg tagcgtcggc gccgcgttac      2640
     aacaamgcgg caacagcggt tgggaaccgc tggcgttctt ttcgaagaag ctgagtccgg      2700
     ccgagtcgaa atatagcgcg tttgacaggg agttgttagc ggtgtatctc gcgattaaac      2760
     attttcggca catgttggaa gcacggactt tcgcggtgta tacggatcac aagccgctga      2820
     ctttcgcgtt tcgtcaaaaa ccggataagt gttccccacg tcagtttaga cacttggatt      2880
     ttatcggcca gttcacaacg gatattcggt atatacctgg atctgataac gtcgtggctg      2940
     acacactttc aagaattgac gaactgaaat tgcctttgga ctacgccgcg ttggctgcat      3000
     ctcagaaatc tgacgaggaa ttaaagaaac tgttagacca agaatcaagt ctattaatga      3060
     gagagacgga aattccggga acaggaatag cggtgtattg cgacacgtca acgaaaacgc      3120
     cgcgtccatt cctgacaaaa ccgtttcgtc gatctgcgtt tgacagtgtc cataatttgg      3180
     ctcatccggg agtaagggcg acgagcaagc tcatggctca acgctatgtc tggccgtcga      3240
     taaacaaaga ctctcgggac tgggctcgtg catgcatacc gtgccaacga gccaaggtat      3300
     cacgtcatgt cacgacgccc gtaggatcat ttgcggtgcc atccaggagg tttgagcaca      3360
     ttcacctgga catcataata atgccaattt cagaggggaa gagatactgc ctcatctgcg      3420
     tcgatcgctt tacgcgatgg ccggaagcat tccctctaga agaccaagag gcagaatcag      3480
     tggcgagagc tttctatgac ggatggatct gccgatttgg tgcgcctctg cgagttacca      3540
     ccgatcaggg acatcagttc gagtctcatc ttttccgtca gctgagtgag ttgacgggaa      3600
     cgtcgcacct gaggactgca gcatatcatc cgcaagcgaa tggtatggtg gagcggttcc      3660
     atcgccagct caaagcggct attaaatgtc atgagagcag tmgttggacc cgggtgctgt      3720
     cgacggtgct actgggagtt cgggcggcct ggcgagaaga cctgcaggca acggcggccg      3780
     aactcgtata cggagaaacg cttcgactac cggggcagtt tctaaatcgg caaataacag      3840
     aggactcggg ggatgtaact gactacgtca aggagctgcg tcgtcacttc gacgatttgc      3900
     gcccgatcgc gggcactcgc cacggaggac agcatccgtt tgtttcagaa atttggcgac      3960
     cacggaccat gtattcatcc gtcatgatgg accgaaagaa atgctgcgac caccttacga      4020
     tggccctttc gcagtgacaa gccgcggcga caaaaatttt gtcgtgcgcg tgcacggtaa      4080
     aaatattacg gtgtcaatag attaaaacca gcatatttaa tttcagatct tatcacagat      4140
     gatagatcac agctaccagg gtcaatggaa cacaacaaat ccgatgtaaa tatgagctcg      4200
     agacagtcgg aaaacacgcg agccgtatca ggacagccag gatatcgtga cgaaatcagg      4260
     gaggagagtg cgattcccgg accgtttcca ggctggatcg aaataaattc taaatttcaa      4320
     atagctacat gtatccgtat cagaatagaa tcaatttata ttattttttt ttgacagaat      4380
     cgaattagtt gactccggtg tccgtaatta ggtcgtaata ttttatttta gtgtatttta      4440
     ttttatcttt atttcattta tctttcttca tttcttttat tttattgtat tagttattta      4500
     tttatttatt tatttattta gtcagcaatg tatttatcca ttattttatt ccaaggtatt      4560
     tcttcttatt ttattttatt taagttagct atatttcgtc ttatcttatt ttatttattt      4620
     gcttatttat ttcttcgtcc gaaacaatac gcaaataatt aaagatatcg gtaactcgac      4680
     tggccagttt aacgaaattt agatagcaag ctttatattt tgtagattca catgttccat      4740
     ttattattta ttatattgta tgttgtacgt tattaatacg catatgttat cagcattatt      4800
     ttaacacgtt ttcgacttca tatcgtgagt aaatcactgg caggggggta c               4851
//
ID   Gypsy-13_PBa-LTR repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-13_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-571
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 696-696 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 571 BP; 197 A; 106 C; 116 G; 152 T; 0 other;
     tgtggcgata tgtttgccac gtctggtaaa gccgaacacg cgtatttaga aagacacacg        60
     tatacacgca cacatagccg ggtcactcgg aatcgttaga tatttgcgcg gaatcgagcg       120
     acaaatataa cgatcgtact tttgtttctt ctcgaatcgg agatgccgct taattgtttt       180
     gagcagtgcg aataattgtc tgcatgcatc cgattgtctt agcatgtaaa atttagagag       240
     tttaagtcaa ttactgacag tcgtggaatt aaatcattag tcgttattaa aacgaaatat       300
     tcaaattgta acgaaagcga aaataatgac aagacgaaaa atattttgac aatagaagaa       360
     acatctcgaa caaaatatgt gacccggaca atcgatttga caaagaaaag acggaattgg       420
     cattcggtct cgagattttg aggagtcaag gcgtgtcgcg agaatagatg ttgtaatacc       480
     gagattaata aaataataaa gaaacagacg ttaacgcaga acttcgcctc atcctaattg       540
     attctcctac actcaccaat ccatatcacc a                                      571
//
ID   Gypsy-13_RP-I repbase;    DNA;    INV; 4131 BP.
XX
AC   ACPB02039362;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_RP_;
KW   Gypsy-13_RP-LTR; Gypsy-13_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4131
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02039362; Positions   15166   11036.
XX
CC   Positions [3163-3675] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..982
FT                 /product="Gypsy-13_RP-I_2p"
FT                 /translation="MPKRRKAQPEPSDDVEVGVPPHPANKMNTSSRSSSTD
FT                 KCLILPHPASKVTAPPFAPEQVDVWLLQFDTSLQIAGVQDSGSKYNHLITA
FT                 LPTDVLAQAMRVVEASVQDKYEHMRKYLKERYQVTIDQRIERLFAEGELGD
FT                 RRPSQLLNDLRRLAAGTDIGQHTIRQLWLQRLPIHTRTIVAAQEGSLDSLA
FT                 QTADRVWGVECPEHEIGETRCIRSIQNTQATSYATPIERVDDVPFPHSTHN
FT                 QHSPQPREVAQIKSPKERRRETRSAQAAKLKEQIAQLEKELRSLETDELCF
FT                 FHRKFGSKAYKCKPSCGWRPENCLGKR"
FT   CDS           952..4116
FT                 /product="Gypsy-13_RP-I_1p"
FT                 /translation="MAAGKLFGQALDAASSLPPLSSRLYVTDRLTGTMFLV
FT                 DTGAEVTAIPPPAGRQSLSTGEPKLTAANGTPIPLYGRRPMHLDFGEDLAA
FT                 HWDVLIAGVSRPILGADILKAYGWTVDLQNGQLIASTTGNTKKEALTVHTH
FT                 QTRRGENAADRYEAILNEFPRVVGDEPMTDRVCSHTTHTILTTGRPTYAKP
FT                 RRLPPDKLAAAKLEFDHMCRKGICRPSKSHWASPLHMVRKKTGEWRPCGDY
FT                 RQLNAQTVPDRYPLPHIQDFTSHLHGKTVFSTIDLERAYHQVPVAPEDVPK
FT                 TAITTPFGLFEFPQMTFGLRNAAQTFQRFMHGVLQGLPECFVYIDDILVAS
FT                 SSEDEHHDHLRTLLSRLDQHGIKINRQKCHLGQQEVQFLGHTVSAQGIRPT
FT                 GVKCEAITSYPQPSTVEQLRRFLGMFNFYRRFVPHAAQLQSPLLKFLKGAR
FT                 KRDTRKIEWNKESEGAFHDCKTALADAALLAHPEANPTLELVVDASESALG
FT                 AALHQVRAQGREPLAFFSRRLSDAERRYSAYDRELLAAYAAVRHFRHWVEG
FT                 RQFTLLTDHKPLTFAFQQRPDKASPRQLRHLDYIAQFSTDIRHISGSCNTV
FT                 ADALSRVEALSTHQGLDYSQLAREQLQDVELQQLFQPSSDTHPLSTGLRLK
FT                 RLSMQGGGPNVICDLATGRPRPFIPRSQRKQVFLLVHSLAHGGPKATARAV
FT                 AQRFVWPRMQRDCREWARDCEDCQRGKIGRHTKAPLTAFSQPGERFAHLHI
FT                 DLVGPLPPSQGYRYCLTCIDRYTRWAEAIPLQSATAPAVASALYAGWIARF
FT                 GCPASITSDQGTQFTSRVYHELAALTGTQLKRTTAYHPQANGVIERWHRTL
FT                 KTALRCHGTDSWMDRLPTVLLGLRAAVREDTGLSPAEYVYGTTLRLPGEFV
FT                 GEEFTNQTQTEVVQQLKRSMRALRPAPTVWHARQKPFVHQQLGTCSHVFLR
FT                 IDAHRSPLAPPYEGPYPVLSRTDKTLCIDRRGKSKTVTIDRVKAAYGLATP
FT                 GLVITPAAPEPTQVQEKQLGAHPIDTTQNHATRSGRISKTPQRYGTQRC"
XX
SQ   Sequence 4131 BP; 1087 A; 1203 C; 1088 G; 753 T; 0 other;
     agtggtgacc ccaacaataa caagcatgcc gaaaaggaga aaagcacaac cagaacccag        60
     cgatgatgta gaagtcggtg taccaccaca tcccgccaac aaaatgaata catcctctag       120
     gtccagcagt actgataaat gccttatact accgcatcca gccagcaagg taacagcgcc       180
     cccattcgcc ccagaacagg ttgacgtgtg gctgttgcag ttcgacacct cgctgcagat       240
     agccggcgtg caggactctg gtagtaagta taaccatttg attacagccc tgcctaccga       300
     cgtactagca caggcaatgc gagtggtgga ggcgtcggtg caggacaaat atgaacatat       360
     gcgcaaatac cttaaagaac gatatcaggt cactattgac cagcggatcg agcgactgtt       420
     cgcagaaggg gagctagggg atcgacgccc ctcgcaatta ctaaacgacc tgcgacgatt       480
     ggctgccggc actgatatcg ggcagcatac catccgtcag ttatggctcc agcgactgcc       540
     aatccacacg cgcactatcg tggcagcgca ggaaggttca ttggacagcc tagcacaaac       600
     cgcggacaga gtatggggag tagagtgtcc agaacacgag atcggtgaaa cgcgatgcat       660
     ccgtagcatc caaaatacgc aggcaactag ctacgcgaca cccatagagc gggtagatga       720
     cgtaccattc ccgcatagca cacataacca acactcgcct cagccgcgcg aagtagcaca       780
     gataaaatcc cctaaagaac ggcgacgcga aactcgcagc gcacaagccg cgaaattgaa       840
     agaacagatt gcccaactag aaaaggagct gcgcagcttg gagactgacg agctctgttt       900
     ttttcatcgg aaatttggca gcaaagccta taaatgtaag ccctcgtgcg gatggcggcc       960
     ggaaaactgt ttgggcaagc gttagacgcg gcgagcagct tgccccccct ctcaagccgc      1020
     ctttatgtaa ctgacaggct caccggcacg atgtttctcg tcgatacagg ggcggaagtg      1080
     accgcaatac cacctccggc gggcagacaa tcactatcta ccggagaacc taagctcaca      1140
     gccgctaacg gaaccccaat tccactttac gggcgacggc cgatgcacct ggacttcggc      1200
     gaggacctag cagcacattg ggacgtactc atagcaggcg tgtcgcggcc aatcctgggc      1260
     gcggatatct taaaggctta tggctggaca gttgacctcc aaaacggcca gctgatagcg      1320
     tcgacgactg ggaacaccaa gaaggaggca cttaccgtgc atacgcacca aactaggcgc      1380
     ggggaaaacg cagccgaccg atacgaggca atattgaacg agttcccaag ggtcgtgggg      1440
     gatgagccca tgacagacag agtgtgttcg cataccacac acactatact aacgaccggg      1500
     cgccccacgt acgccaaacc aagacgcctc ccaccagata agctagcggc ggctaaacta      1560
     gaatttgatc acatgtgcag gaagggtatc tgccgaccct ccaagagcca ctgggccagc      1620
     cctctgcaca tggtccgtaa gaaaacggga gaatggcgcc cgtgtggaga ctaccggcaa      1680
     ttaaatgccc aaacagtccc agatcgctac ccattgcccc acatccagga cttcaccagt      1740
     catctacacg ggaaaacagt gttctcgaca atcgacctgg agcgggccta tcaccaagtt      1800
     ccagtggcac cggaagacgt accgaaaacg gccattacca cacccttcgg gctctttgag      1860
     tttccgcaaa tgaccttcgg cctccgtaac gcggcccaga cgttccagcg gttcatgcac      1920
     ggagtcctac aagggttgcc agaatgtttc gtctatatcg atgacatttt ggtcgcctcc      1980
     agttcggagg acgaacatca cgaccacctc aggacgctgt tgagccgctt ggaccaacac      2040
     ggtatcaaaa ttaaccgcca aaagtgccat ttgggtcagc aggaagttca gttcctcggg      2100
     catacagtct ccgcacaggg aatacggcca acaggagtaa aatgcgaagc gataacgtcg      2160
     tatccccaac ccagcactgt ggagcagctt aggcgattcc tgggaatgtt taatttttac      2220
     aggcgattcg tgccgcatgc ggcacagctg caatccccgc tgcttaaatt cctaaagggt      2280
     gcacgtaagc gcgacacgcg taagattgaa tggaataagg aatcggaagg cgcattccac      2340
     gattgcaaaa ctgcactggc cgatgcggca ctcttggcac acccagaagc taaccctact      2400
     ttggagctgg tcgtggacgc gtcggaatcg gcgttagggg ccgctttaca ccaagtcaga      2460
     gcccagggac gagaacccct cgcgttcttc tccaggcgac taagcgatgc agaaaggcgt      2520
     tatagcgcgt atgataggga gctcttagcc gcatacgccg cagtgcggca cttccgccac      2580
     tgggtcgagg gacgacaatt cacattacta acggaccata aaccactgac ctttgccttt      2640
     caacaacgtc cggacaaggc atctcctcgt caactacgtc acctcgacta tatcgcgcaa      2700
     ttctccaccg acatccgcca catcagtggt agctgtaata ccgtcgcaga cgctctgtca      2760
     cgcgtagaag ccctaagcac tcatcaaggc cttgattaca gccagctggc gcgagaacag      2820
     ctacaggacg tggagctaca acagctcttt cagcccagct cggataccca ccccctcagc      2880
     actggcctac gattgaagcg actgtcgatg caaggaggag ggccaaatgt tatttgtgat      2940
     ttagctacag gccgaccacg cccctttatc ccacgcagcc aacgcaaaca agtctttcta      3000
     ttagtacaca gcctggctca tggaggtcct aaggcgaccg cacgggcggt agcccaacgg      3060
     ttcgtctggc cgcgcatgca gcgggactgc cgtgagtggg cacgcgactg tgaagattgc      3120
     cagaggggta aaatcgggag acacacgaaa gcgccgttaa cagctttctc ccagcccggg      3180
     gaaagatttg cgcatttgca cattgatctc gtgggaccgc tcccgccctc gcaaggctat      3240
     aggtactgcc tgacatgtat agacaggtac actcggtggg cagaggcgat accgctacaa      3300
     agcgctactg cgcccgccgt cgcttctgct ctgtacgccg gctggatcgc aaggttcggc      3360
     tgcccagcct caatcaccag cgaccagggg acgcagttta cgtcaagagt gtatcatgaa      3420
     ctggcggcgc tcacaggaac tcagctcaaa cgaacaaccg catatcaccc gcaggctaat      3480
     ggtgttatag agcgatggca caggactctg aagacagcgc tacgctgcca tggaacagat      3540
     agctggatgg acagactgcc caccgttttg ctgggtttac gagcagccgt gcgtgaggat      3600
     acgggactgt cccctgcaga gtatgtgtat ggaaccacgc tacggttacc aggcgaattc      3660
     gttggggagg aattcactaa ccagacgcag acggaagtgg ttcaacaact taaaaggtct      3720
     atgagagccc tgcgcccggc accgacggtc tggcacgccc gccaaaaacc atttgttcat      3780
     caacaattgg gaacctgttc gcatgttttc cttaggatcg acgcgcacag gtccccgctg      3840
     gcgccgcctt atgaaggtcc atatcccgta ctctcacgaa ctgacaagac cctatgtatc      3900
     gaccgacggg gcaaaagtaa aacggtcacc atcgaccggg tcaaggcggc ctatggactg      3960
     gccacaccag gccttgtcat aacaccagcg gcgccagagc ctacccaggt ccaagagaaa      4020
     caactgggag cacacccgat cgacaccaca cagaatcacg ctacacgatc cgggcgaatc      4080
     agcaaaaccc cgcagcgcta tggtacgcag cgctgctagg aaggggggtg c               4131
//
ID   Gypsy-13_RP-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   ACPB02039362;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_RP_;
KW   Gypsy-13_RP-I; Gypsy-13_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-249
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02039362; Positions   11035   10787.
XX
SQ   Sequence 249 BP; 76 A; 41 C; 43 G; 89 T; 0 other;
     tgtggcgacc cactgttggc acgagactgc ctcgggctcc tccgaggcga aaatgtgttt        60
     tatttaattt atttctattt ttattcattt aaatattata cacatgtttt ttgtcaatat       120
     gacacatgtg agtttttcat aaaagactag gacctgttac aaagcaaaaa atagattgta       180
     tgtactaagg tacaagaaat acagctttta aggtacatat ttgtggttct tattttacgc       240
     ataaccaca                                                               249
//
ID   Gypsy-13_SI-I repbase;    DNA;    INV; 4217 BP.
XX
AC   AEAQ01024017;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_SI_;
KW   Gypsy-13_SI-LTR; Gypsy-13_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024017; Positions    4607     391.
XX
CC   Positions [1611-2111] - Reverse transcriptase
CC   Positions [3247-3717] - Integrase core
CC   'TTGTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1071..2405
FT                 /product="Gypsy-13_SI-I_2p"
FT                 /translation="MYNLSNVLASEEPLIVKVEIEGKSIAMELDTGAGKSI
FT                 LPEKIFKEKFSHCKLENTKIRLRMYNGSILIPEGQISVNIKCKETVIQAQL
FT                 IVVKKGNRILMGRDLMKLLNIKMEQINFIKEEDNLKALLQEYKELFNNELG
FT                 KYKFEKIDLKLSKEANPIFIKSRPIPLAFKEKISKQLEELEKKGVIEPIDT
FT                 SAWGTPLVPVIKKDGSIRICADYKITVNKFLEDVKHPLPRIEELFTALSGG
FT                 ESFTKLDLTAAYNQLEVTERTSKLLAWSTHKGIYSLKRLPFGTKPACSIFQ
FT                 RTIEKVLQGVKNVINFIDDIVVTGANKEEHLKNLREVFKRLSEAGFKVNLK
FT                 KSVFFQPEIKYLGHVINKEGLHKDPEKVAAMLEAPKPKNVSEVKAFVGMVN
FT                 YYGKFVPNLSQVLIPLYELQRSTTFKWTQQCEEAFNNVKKRISVREKFGSF
FT                 "
FT   CDS           2302..4170
FT                 /product="Gypsy-13_SI-I_1p"
FT                 /translation="MNSSVVQHLNGRSNAKKRLIMLKSELASERNLVHFNK
FT                 KWKLKLVCDASKVGIGAVLLHVLPDSTEKPISFASRVLHDAEKNYSVIHKE
FT                 ALAIYWAICKFYQYLMGNEFILCSDHKPLMALFGEHKGIPQMAAGRLQRWA
FT                 LFLSGFQYKFEHIKGIQNGGADGLSRLPRPIKIKEAEVEDYFHFVTAERTP
FT                 IDATQIKKELRKDNILSKVYLYTRDGWPNSVSEEIKVFASKANEIGIENDI
FT                 LMWGYRVIVPFKFRKALLEEIHGAHLGMAKMKMIARQYFWWPNIDKEIEEY
FT                 VKDCEACRTTANNPNKSPLIKFQEAEFPFDRIHIDFAGPFKGKTYLIVVDA
FT                 FTKWPEVFEMSNTNTESTIEKLRQCFARFGLPRMIFSDNGRQFVSEEFENF
FT                 CKNNGIKHRTSAPYHPSTNGLAENAVGSFKKGLSKALADKRNASLSTTTLI
FT                 NRYLASYRNAPHTSVGESPSKLMFGREIRTRLSLLNRPERDKAREKQVQYF
FT                 KGNREILLKPGDIVYVRDYKIPTKPTWRKAIIKSKIGNRTYVCKTLDSEEL
FT                 IWKRHIEQIIEAGKFYSEEEDCMSKSDKDNKKSDSKELEVVQEPEKDNVCE
FT                 SPEETKTDINVKPKRIIKPVQRLNL"
XX
SQ   Sequence 4217 BP; 1587 A; 552 C; 934 G; 1144 T; 0 other;
     attggcgacg aggatattct ggcaaagcgg gtgcatcgga aattgaacga gaagtacaat        60
     caaggcggat gtaacaattg agatcagaga cgtcaggagc aggagcaatt aaaagccaag       120
     ttgcatcaag agcagatgca gctagcagag tggcaaaggc aactgcagca gcagcaaaat       180
     ttaatgcagt agcaagcaca acaagtaaag actcaggtac ctaaagaagc gatgccgaac       240
     attacttttc tttcaacgat tggagcgctg tccgaattta atattggtga agactggaat       300
     ctctatcaag agcggctagg acagtatttt gtagcgaatc aagtttcgca ggaacgtaag       360
     gtagcagtat taattacatt agtaggacaa gaggcttata aaattttgaa ggacctctgt       420
     gatccaacgc ttccagaatg taaatcgtat gaagaattgt gcgaaatttt aaagaaacag       480
     tttgccccaa gagtctcggt tttcaaggag agaatcgaat tttacgagtt aaagcagaag       540
     gaaaaggagt cagtaaatga gtggtttgct cgtattaaga gcaaagctat caactgcaaa       600
     tttggagcgc aactggacga caaaatcaag gacagatttg ttactgggtt aagtaaaggt       660
     cgaattttgg atagagtatg cgaggaagag catacaacaa cgctacagtc gattctcgag       720
     gtggcaagaa agaaggaagc agctttggct tcgtcgtcta aggctagtct ggtggacgtg       780
     cacaatttga agtcgggaaa agcaaaatcg gctcagcagg tgacgttcca gaaaaagaag       840
     aaagaggaga agacaggaag ccagcaccaa gggtccaaag aagaacgaaa tgcgtacatt       900
     gcggaggtac aaggcatatt tttgcaaagt gcaagtataa gacatataaa tgtaaaattt       960
     gtagcaagga aggtcatttg gctaaaattt gtaaaaataa taagagcacg gtagctaata      1020
     caaattattt agaatctggt tcaaatgata aggatacaga gattgtggat atgtataatt      1080
     taagcaatgt tttagcaagc gaagaaccgt taatagttaa agttgagatt gaaggtaaat      1140
     ctattgccat ggaattagat accggagcgg gtaaatcaat attaccggaa aagattttta      1200
     aagaaaaatt tagtcattgc aaattagaaa acacaaagat taggttaagg atgtataacg      1260
     gaagtatttt aattccggaa gggcaaattt cagttaatat taaatgcaaa gagacagtga      1320
     ttcaagccca gttaatagtg gtaaagaaag gaaacagaat attaatgggt agagatttaa      1380
     tgaaactgtt aaatattaaa atggaacaga tcaattttat taaagaagaa gataatttaa      1440
     aagcattact gcaagagtat aaagaattat ttaataacga gttgggtaaa tataaatttg      1500
     aaaagataga tttaaaatta tcaaaggaag ctaatcctat ttttattaaa tcaagaccga      1560
     taccattagc atttaaagaa aaaataagta aacaattaga ggaattagaa aagaaaggag      1620
     taattgagcc tatagatacg tcagcttggg gtacgcccct ggtaccggtt attaagaaag      1680
     atggaagtat tagaatttgc gccgattata aaattacagt caataaattt ttagaagacg      1740
     ttaagcatcc tttacctaga attgaagaat tatttacagc gttaagcggt ggagaatcat      1800
     ttactaagtt agatttaaca gcggcgtata atcaattaga ggttacagaa agaactagta      1860
     agttacttgc gtggagtact cataaaggta tttattcgct taaaaggtta ccgtttggaa      1920
     ccaagccagc gtgttcaatt tttcaaagaa cgatagaaaa agtcttgcaa ggtgtaaaaa      1980
     acgtaattaa tttcattgat gatattgtag ttacaggtgc taacaaggaa gagcatttaa      2040
     agaatttaag agaagtattc aaacgtcttt cagaggcggg atttaaagtc aatttaaaga      2100
     aatctgtatt ttttcaaccc gaaattaaat atcttggaca tgtaattaac aaagaagggt      2160
     tgcataagga tccagaaaaa gtagctgcaa tgttagaagc acctaaacca aaaaatgtgt      2220
     cagaagtaaa ggcctttgtt ggtatggtta attattatgg caaattcgta ccgaatttat      2280
     cacaagtgtt aataccttta tatgaactcc agcgtagtac aacatttaaa tggacgcagc      2340
     aatgcgaaga agcgtttaat aatgttaaaa agcgaattag cgtcagagag aaatttggtt      2400
     cattttaaca aaaagtggaa attgaaatta gtttgtgatg catccaaggt aggcattgga      2460
     gctgtcttat tacatgtttt gccagatagc acagaaaagc caatttcatt tgcatctaga      2520
     gttcttcacg atgcagaaaa gaattattca gtaattcata aagaagcatt agctatttat      2580
     tgggctatat gcaaatttta tcaatattta atgggtaacg agtttatttt atgttctgat      2640
     cataaaccat taatggcttt gtttggggag cataaaggca ttccacaaat ggcagcaggc      2700
     agattacaaa gatgggcctt atttttaagc ggatttcaat ataagtttga acatattaaa      2760
     ggcattcaaa atggaggagc agatggctta tctaggttgc caagacccat taaaattaaa      2820
     gaagcagaag ttgaagatta ttttcatttt gttacggcag agcgtacacc tatagatgca      2880
     acacaaatta agaaagaatt gcgaaaagat aatatattaa gtaaggtata tctgtataca      2940
     agagacggat ggcctaattc agttagcgag gaaataaaag tttttgcaag taaagcgaat      3000
     gaaattggta ttgaaaatga tattcttatg tggggatata gagtaatcgt tccgtttaaa      3060
     tttagaaaag ctctattgga agagattcat ggagcacatt taggaatggc caaaatgaaa      3120
     atgatagcca gacagtattt ctggtggcct aatattgata aggaaataga agaatacgtg      3180
     aaagactgtg aagcttgcag aactacggct aataatccta ataagtcacc attaattaaa      3240
     tttcaggaag ctgaatttcc gtttgataga attcatattg actttgcagg accttttaaa      3300
     ggtaaaacat atttaattgt agtggatgca tttactaagt ggccggaagt gtttgagatg      3360
     tctaatacga acacagaaag cactattgaa aaattaagac agtgttttgc tcgttttggt      3420
     cttccacgta tgattttctc agataacggc agacagtttg tctcagaaga gtttgaaaat      3480
     ttttgtaaaa ataacggcat taagcataga acgtcagcac cgtatcaccc atcgactaat      3540
     ggtttagcag aaaatgcggt aggttctttt aaaaaaggtt tgtcaaaagc gttagcggat      3600
     aagcgaaatg cgtcattaag tacaactaca ttaataaata gatatttagc ttcgtacaga      3660
     aatgcgccac atactagcgt aggagagagt ccatcaaaat taatgtttgg gcgtgaaatc      3720
     cgaactagat taagtttgtt aaataggcct gagagagata aggctagaga gaaacaagta      3780
     cagtatttta aaggaaatcg agaaatttta ttaaagccag gagatatagt gtatgttaga      3840
     gattataaga ttccaacaaa accgacgtgg cgtaaggcga ttattaaaag taaaatcgga      3900
     aatagaactt atgtgtgtaa aacgttagac tcggaagagt taatttggaa aagacatata      3960
     gagcagatta ttgaagcagg aaaattttat agtgaagagg aagattgtat gagtaaaagt      4020
     gacaaagaca ataagaaatc ggattcaaaa gagttagaag tggtacaaga gccggaaaag      4080
     gacaatgtat gtgaaagtcc ggaggaaacg aagacggata ttaacgttaa gcctaagaga      4140
     attattaagc cagttcaaag actcaattta taaaatgtat taaacattta agtttttcat      4200
     aattagtggg agaggag                                                     4217
//
ID   Gypsy-13_SI-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   AEAQ01024017;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_SI_;
KW   Gypsy-13_SI-I; Gypsy-13_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024017; Positions     390     169.
XX
SQ   Sequence 222 BP; 56 A; 49 C; 33 G; 84 T; 0 other;
     tgtgatatta tgcgctagta attttattat agttatttta gttagtccct atgcagcgtt        60
     tggcgcctat gtgttcccgc caagaaccga ctctcttttt cgttgctact aaccaacgtg       120
     cgactgctcc cttgcgttac taatattcat ttggcatttt cagtataata aatatagttt       180
     cgttcacata tattacttat ttaccaccca taagacatca ca                          222
//
ID   Gypsy-13_SiCu-I repbase;    DNA;    INV; 4225 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4225
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5037-5037 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..4163
FT                 /product="Gypsy-13_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MHSDSEADSSKSRRNSSSQTAPRAPKKPATTMGTVGF
FT                 LQQFDPSKDDFSVWEVSFNSFLTANKLDKTVQTAQCQGVLLSSIGLQSCAL
FT                 LQSLVAPDDIYKKTPSELLTVLRDHYKPAPKALSERFKFMCRKQKQGETAP
FT                 QFLAALREIAVYCKFEFDLDSRLRDQFIFGLSNEAVQRAIFSKSDDVKLEK
FT                 VLQIAVAAESAEASTALVRRSNAPSSVTTEPIHKMSKFRSKQNKHFYNNTD
FT                 KKNHSQQQQNQPVQHSSKSQDSNSPRKSCGNCGSFEHTYWKNCPHRDVVCS
FT                 SCGKKGHFSQLCRSKGQNSSQKSTKNTNALQVDGYTTNTIICQVNGNKNEE
FT                 KIMLDILVHGAPMKMELDTGCQASCLAEDDWKIMGSPPLQPSHHVFRTFTG
FT                 EIFHPLGALKTSISYNNQSTAVTIPVVKGTSLFGRDLLRKIKINWNFIQTQ
FT                 LNTVNVSKESIKTLLDEFHDVFKAPTAHDRIKNFQARLILKDEAKPKFLKA
FT                 RTIPYAVRAKVDTELDLMEKTGVLTKIEHSEWASPLVVVPKPDGRVRITGD
FT                 FKDTVNSQLNVTQYPIAVPDDIFTTISGGNTFSKLDGTNAYHQMEVVPDCR
FT                 KYLVINTHRGLYQYNVLPQGIASSPAIFQEFADTMLRGIEMTAAYIDDITT
FT                 TGKTDSEHFSTLRKIFERMRKYNFKLSMNKCAFLRDSVVFLGHTISKDGIA
FT                 TTSKKVQDIVNLRVPQNVSELKSFFGLTNFYMKFLPNLSTILAPMYKLTQN
FT                 NVPWHWSRKCQDGFDEVKKKLISAPILAHFDPALQLGLSADASSTGVGCIL
FT                 FHVYPDGSERPISYASKLLSDTEQRYSQIEKEGYAIVFGLNKYYKYLCGRN
FT                 FLLITDHKPLLTIFGPKSQLPPYVATRLHHWMLYLSQFQYEVRYRKSADHG
FT                 NADALSRLSSNPATTEAHEADLVVNQLITETVELLPLTASKIRQATCRDPV
FT                 LSRVQQLVLYGWPATQEDKTLQPFFSRRDELSVAQGVLTWGLRVIIPSKFQ
FT                 QQILKQLHESHFGVVKMKALARQHVWWPNIDSDIELLCKQCTHCQEHRPNP
FT                 ASAPLHPWQFPEKAFQRIHIDLAGPVHKRMWLILVDAHSKWPEVCNLNSNT
FT                 TSSAVIQKLVEIFARFGLPNQLVSDNGPQFTSDEFQQFCKNNKINHILCSP
FT                 YHPRSNGEAERFVRTFKNAMRADDLPVDSCLQRFLFNYRSAPHSTTGVSPA
FT                 ELLQTRKLRTLLDLVHPNVDDNVQQAQTNQEKVYNKRVKMRSFSPDDPVWV
FT                 QSHARGEEKWSLGKILQQLGPVSYLVQFGEKSIRRHVDHIRHATSSSPPSS
FT                 SSTSAAPPPDAALPAH"
XX
SQ   Sequence 4225 BP; 1218 A; 1160 C; 786 G; 1059 T; 2 other;
     tttggcgacg agtgtgtttt cgctacgctc atctccagca gccccaagtt cgactggcca        60
     cgaggtgatc atttacttta cacgtttcac accgccccaa atcatatttg gctgtgaaag       120
     tactgtacaa gacaaaaccg tgctcctgaa catttctctt cagaaattag ccgttcttca       180
     tgcatagtga cagcgaagcc gattcttcca aatcacgaag aaactcttct tcacaaaccg       240
     ctcctcgagc accgaaaaaa cccgcaacaa caatgggaac agtcggtttt ctacagcagt       300
     ttgatccatc gaaagatgat ttttccgtgt gggaggtctc tttcaactct ttcttaacag       360
     caaataaact ggacaaaaca gtccaaaccg cccaatgtca aggtgttttg ctgtcttcaa       420
     tcggtcttca atcctgcgct cttcttcaaa gtttggtggc tcccgacgac atttacaaga       480
     aaacaccaag tgaacttctt acggtgctcc gtgaccacta caaacctgcc ccgaaagcac       540
     tatctgaacg cttcaagttc atgtgccgga agcagaagca aggcgaaaca gctcctcagt       600
     tcctagcagc tctacgggaa attgcagttt attgcaaatt cgaattcgac ctagactctc       660
     gccttcgtga ccaattcata tttggtctct ccaatgaagc agtgcagcgg gccatcttca       720
     gcaagtctga cgacgtgaag ctggaaaagg tccttcaaat cgccgttgca gccgaatccg       780
     ccgaagccag cacagcgctc gtgcgtcgca gcaacgcccc ctcatccgtc actactgagc       840
     caatacacaa gatgtccaag ttccggtcca aacaaaacaa gcacttctac aacaatacgg       900
     ataaaaagaa tcattctcaa caacagcaga atcagcctgt tcagcattct tcaaaatctc       960
     aagactccaa cagtcctcga aaaagttgtg gaaattgtgg ctctttcgag catacctact      1020
     ggaaaaactg tcctcacagg gacgttgtct gttcttcttg cggcaagaag ggtcattttt      1080
     ctcagctctg cagatccaaa ggccagaact cttcccagaa gtcaacaaaa aataccaacg      1140
     ctctacaagt ggatggctat accacaaaca ccataatatg tcaggtaaat ggcaacaaaa      1200
     atgaagaaaa aatcatgctt gacattttgg ttcatggtgc tccaatgaag atggaattag      1260
     acactggctg ccaagctagt tgtctcgcag aagatgattg gaaaatcatg ggatcccctc      1320
     ccctccaacc ttctcatcac gtctttcgca catttacggg agaaattttt catcccctcg      1380
     gcgctctcaa gacatccatc tcttacaaca atcagtcaac agcagtgacc attccggtcg      1440
     tcaaaggcac ttcgcttttc ggcagggacc tgctacgaaa aataaaaatc aattggaact      1500
     ttatacaaac tcaactaaac accgtcaatg taagtaaaga aagtattaaa accttacttg      1560
     atgaatttca tgacgttttc aaagctccaa ctgcacatga ccgcatcaag aattttcaag      1620
     cgcgactcat cctgaaagat gaagccaaac cgaaattcct gaaggcacgc accattccat      1680
     acgccgtacg cgccaaggtc gacacagaac tcgatcttat ggagaaaacg ggcgtgctca      1740
     ccaaaattga acacagcgaa tgggcgtcac cgctcgtcgt tgtccctaaa ccagacggtc      1800
     gtgtacgcat caccggtgac tttaaagaca ccgttaactc tcaactaaat gtcacgcaat      1860
     accccattgc tgttccagat gacatcttca ccacgatctc tggaggaaac acgtttagta      1920
     agcttgatgg caccaacgct taccaccaga tggaggttgt tccggactgc cgcaagtatc      1980
     tcgtcatcaa cactcatcgt ggcttatatc agtacaacgt actgccacaa ggtatcgcct      2040
     catccccagc tatctttcaa gaatttgctg acaccatgct ccgtggtata gagatgacag      2100
     ccgcctacat tgatgacatc actacaaccg gtaaaaccga cagtgaacat ttctcaacat      2160
     tgcgtaagat tttcgaacgg atgcgaaaat ataactttaa attatccatg aacaaatgtg      2220
     cattcttacg cgacagtgtt gtttttcttg gccatacaat ctcaaaagac gggattgcca      2280
     ccacatctaa aaaagtgcaa gacatagtta acttacgtgt accacaaaac gtgtctgaat      2340
     taaaatcatt ctttggctta actaactttt acatgaaatt tttgccaaat ttgtctacta      2400
     tactagctcc aatgtacaaa ttgacgcaga acaacgttcc ctggcactgg tctcgtaaat      2460
     gtcaagacgg attcgatgaa gtaaaaaaga agctcatctc cgcccccatc cttgctcact      2520
     ttgatccagc tcttcaactt ggcttatcag ctgacgctag ctctacagga gttggttgca      2580
     ttttgtttca cgtctatcct gatggatccg agcgccccat ttcctacgcc tccaaactcc      2640
     tcagtgacac ggaacaacgc tacagccaaa tcgaaaaaga aggttacgct atcgtatttg      2700
     gtttgaataa atattacaaa tatttatgtg gaagaaattt tttgcttatc actgatcata      2760
     agcctctgct caccatattt ggtccaaagt cgcagcttcc cccatacgta gccacccgac      2820
     tccatcactg gatgctgtac ctctcacaat tccaatacga agtacggtac cgaaaatctg      2880
     ctgaccacgg caacgctgac gctctttctc ggttgtcttc caacccagca acaactgaag      2940
     cacatgaagc cgatctcgtt gtcaaccagc tcatcacaga aacagtggaa ctcctcccac      3000
     tcaccgcttc caaaatamga caagctacat gccgcgatcc agttctctca cgtgtacaac      3060
     agcttgttct ttacggatgg ccagcaactc aagaagataa gactcttcag cctttcttct      3120
     ctcgccggga tgaactctca gtggctcaag gcgtcctcac ctggggatta cgagtcatca      3180
     tcccttccaa atttcagcag caaatcctca agcaactcca tgaatcccat tttggtgttg      3240
     tgaagatgaa ggcgcttgcc agacaacacg tttggtggcc aaacattgat tctgacattg      3300
     agctcctgtg caaacaatgc actcattgcc aagaacatcg mcccaatcct gcaagtgctc      3360
     cccttcatcc atggcaattc cccgaaaaag ccttccagag gattcacatt gacctggctg      3420
     gtcccgtcca caaacgaatg tggttaatac tcgttgacgc ccacagcaaa tggcccgaag      3480
     tatgtaacct caacagcaac actacctcct ccgctgtcat tcagaaacta gtggaaattt      3540
     ttgcgcgttt cggtcttccc aatcaacttg tgtccgacaa cggcccgcaa tttacctcag      3600
     atgaattcca acaattttgt aaaaataata aaattaatca cattttatgc tcgccctatc      3660
     accctaggtc aaacggtgaa gccgaaagat tcgtccgaac tttcaaaaat gccatgcgtg      3720
     ccgatgactt gccagtggat tcatgcctgc agcgtttcct gttcaactac cgctcagccc      3780
     cgcactccac tactggtgtt tctccagccg aactactcca aacccgcaag ctccgcactc      3840
     tacttgacct tgtccaccct aacgtagatg acaacgtgca acaagcacaa acaaatcaag      3900
     aaaaagtcta caacaaacga gttaaaatgc gctcattttc tccagatgat cctgtttggg      3960
     tgcagtcaca cgctcgtggg gaggaaaaat ggtcccttgg aaagatacta caacagcttg      4020
     gtccagtttc gtatctcgtc caatttggag agaagtccat ccgtcgtcat gtcgaccaca      4080
     ttcgtcatgc cacctcttct tctccaccat catcatcatc gacttctgcc gctccgccac      4140
     cggacgccgc tcttccagct cattagtttt agttagcttt tctcaaatta cacaaaacta      4200
     tgtattcagc taggaggaag gaaaa                                            4225
//
ID   Gypsy-13_SiCu-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-344
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5090-5090 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 344 BP; 103 A; 82 C; 38 G; 121 T; 0 other;
     tgtagaatat ccacatattc taatctaaaa tattctaata tttcaattag ttctaatcaa        60
     gttaattcag aagtctgttc ttatctcgat gtctttgtcg tcagtcagtc gcacagtcaa       120
     ttctcagtaa ttctgtaaac tgataacgta ttacttatgt acatcaaaca tgtatgtata       180
     atgtcaccta aactctctgt cctcttcctg attctcatca gaccaacttt acttcttgct       240
     caggcaactt ctaataaacc ttgtactaac tattggcaaa gcactcactc gtagcaagct       300
     ccactcacat tattccttac actactcggt catcatatac taca                        344
//
ID   Gypsy-13_SiOr-I repbase;    DNA;    INV; 4569 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4569
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 349-349 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           429..3653
FT                 /product="Gypsy-13_SiOr-I_1p"
FT                 /translation="MAEANVTLTQQQFEALLSRISNLSTQSLETGNFSSCS
FT                 SRFNGSKDSDVNAFIDAIETFKDCSKVSDANALRGLSMLLDDFAATWWYGV
FT                 KDTVATWETALDLLRLTFGPRKPAYLVYREIFSKEQDIRTPSDVFICQSRS
FT                 LLAQLPANTLTESTQIDMIYGLLHKRIREKVPRDKIRTFNELLKECRMVEE
FT                 TFVDHFDRPSNDKRPKCRFCKYLGHTEDQCRKKQGTASTSTKTSTTAPSPS
FT                 NPVTSVPNSTLESHPPRISNQVTCYGCNRPGYIKSNCPTCSNTAASVEFCA
FT                 LDNVEVPVYPQSRPILPINILGMNGQGLIDTAAKHSVASGSLYEALRKHNV
FT                 PYTKTRSTIKLADGTVKEQEVKLLRVDVLLGSRYIPTTFMTLPNADKTLLG
FT                 IDFLRSANLVLDIGQQNWSFADDILTKYPLVYEDDHKISNIEVLSVSILRS
FT                 DEAIMLSSEEHKQLSDLLEANQDIFALGGEPTPYAEHYIDTKSHAPISVPP
FT                 YRMTPGNKEKLRQELDKMLRDDIIEECESAWSAPVVLVPKKNGETRVCCDY
FT                 RALNAITTPVHYPLPRMDDLLHATKKTIYMSAIDLRAGYHQVKVREADRDK
FT                 TSFVTPFGTFRYLVMPFGLRNAPATFQKLIDRFRSGLPSILILAYLDDVLV
FT                 ISETFDQHMTDLKRVFERLRTYKLRANRDKCTFATPQVKYLGHLITSNGIQ
FT                 VDPEKTSAITKMHPPQNVKQVRSFLQSASWYRRFIDRFAELSRPLSNLLKK
FT                 DATWNWGPDQKNSFESLLRALASAPVLQQNDPSKPYVLRTDASSYALGAVL
FT                 VQGEGSEEHPVEYASRLLTTAERNYSTTEREALAVVWSLNKFRGYLDNSSV
FT                 ILVTDHQPLRWLLTLKSPTGRLARWAMLIQSYNIKVQYIPGKHNVLADMLS
FT                 RPPCIHTDVESCDICLVTVDFPKRTNAEIRTEQQRDPELKKILDSFEQIGN
FT                 NNYSQWTARGYIVSSGILYKYADGDSEEAQLVVPTHERQRVLQEHHDSPTA
FT                 AHYGTERTYQRIARLYYFTGMRQYINDYIKNCIECQRYKATNQKPAGLVNP
FT                 KYNQRRSLVLIYSVHCQQ"
XX
SQ   Sequence 4569 BP; 1513 A; 966 C; 893 G; 1197 T; 0 other;
     tttggcgtcc caacttgggc catacattgt gaaatgaaga gtttttaaaa gttaaaaaga        60
     taaaaataga catttttatc aaagtgaaca gtcagtggtg aaacagtgct tgtgaacatt       120
     gtaaattgtg ctagtgaaca ttctggaata tttgtgtgtg gacagaattc ctagaaattt       180
     actcagcata gtgcaaactc gtcgtttggc tgcaaattca acactaaacc ctgataagct       240
     tcaccaactt caacaaaatc atccaatcca agcaccttgg gttgaaagaa aagaaaaaca       300
     aaaaaaaatc aaaaaccaca tcatttcggt aagtttttga acattttttt ttcactctgc       360
     aaccttcaga agaaaaccga tactggctac ggagccacag tagtagaaaa acatctaaat       420
     tacgtaacat ggcagaagca aacgtcactc ttacgcagca acaatttgaa gcactcttat       480
     cacgcatcag taatttgtca acacagtcgt tggaaacagg gaatttctct tcatgttcgt       540
     cgcgttttaa cggtagcaaa gactctgacg taaatgcttt tatagacgct atagaaacct       600
     tcaaagactg ctcaaaagtg tccgacgcga acgctctgcg tggtttatct atgctactcg       660
     atgattttgc cgctacgtgg tggtacggag taaaagacac tgtcgcaact tgggaaactg       720
     ctctcgatct tttacgtcta actttcggtc caagaaaacc agcatatctt gtatatcggg       780
     aaatattttc aaaagaacaa gatattagaa caccttctga tgtatttatc tgtcaatcgc       840
     gttcattgct tgcgcaactt ccagcaaata ccctaactga gtcgacgcag attgatatga       900
     tttatggctt gttacataaa cgaatacgag aaaaagtacc tcgagataaa atccgtactt       960
     ttaacgaatt acttaaagaa tgtcgcatgg tagaagaaac gtttgttgat cattttgaca      1020
     ggccttctaa cgataaacgt ccaaaatgtc gattttgcaa atatttggga catacagaag      1080
     accagtgccg aaagaaacaa ggtactgcaa gtacatcaac aaaaacttcg actacagcgc      1140
     cttcaccaag taatccagtg acatctgttc caaattcgac cttggaaagt catcctcccc      1200
     gaatatcaaa tcaagtgaca tgttacggat gtaatagacc tggctacatt aaatccaact      1260
     gtccaacttg ttccaacacc gcagcttctg tcgaattctg tgctcttgac aatgtagaag      1320
     ttcctgttta ccctcagtca cgtcctattt tgcctataaa catactagga atgaatggtc      1380
     aaggactgat tgacacagcc gccaagcaca gcgttgccag tggctcatta tacgaagcat      1440
     taaggaaaca caacgttccg tatacaaaaa ccagaagtac gattaaactt gcagatggta      1500
     ccgtgaaaga acaggaagta aaacttctga gagttgatgt tttactagga agtcgttata      1560
     taccaacaac atttatgact ctacccaatg ctgacaaaac cttactaggc atagatttcc      1620
     ttcgaagtgc taaccttgtt ctggacatcg gacagcaaaa ttggagtttt gcagacgata      1680
     ttttgactaa gtatcccttg gtatatgaag atgaccacaa aatttccaat atagaagtac      1740
     tttccgtttc aattttgaga tcagatgaag ccataatgtt atccagtgaa gaacataagc      1800
     agttatcaga ccttcttgaa gccaaccagg atattttcgc tctaggggga gaaccaactc      1860
     cttatgctga acactatatt gataccaagt cacacgcacc aatttcagta ccaccgtacc      1920
     gaatgacgcc tggaaacaaa gaaaaacttc gacaagaact agacaagatg ttacgagatg      1980
     acattataga agaatgtgag tcagcttggt cagcaccggt agtactcgtt ccaaagaaga      2040
     atggcgaaac tagggtatgt tgcgattaca gagctttgaa cgctattacg acacccgtgc      2100
     attatccgtt acctcgaatg gacgatctac tgcatgcaac caaaaagact atatacatgt      2160
     cagccattga tttacgtgcg ggatatcatc aagtgaaagt gcgggaagca gatagagaca      2220
     aaacatcgtt cgtgaccccg ttcggaacat ttcggtacct ggtcatgccg ttcggtctgc      2280
     gtaacgcacc agcaactttc caaaagctga tcgacagatt tcgaagtgga cttccatcta      2340
     tcctgatact cgcctacctc gatgacgtgc tggtgatatc tgaaacgttt gatcaacata      2400
     tgacagactt aaaacgtgtc ttcgaaagac tcagaacgta caaactacgt gcgaatcgtg      2460
     ataaatgtac atttgcgact ccacaagtaa aatatttggg acatttgatc acctctaatg      2520
     gcattcaagt agatccagag aaaacttcag ctattacgaa gatgcatccg ccacaaaatg      2580
     taaagcaggt tcggtcattc ttacaatccg cttcctggta tcgacggttc atcgacagat      2640
     ttgctgaatt gtccagaccc ttgtctaatc ttttgaagaa agatgctact tggaactggg      2700
     gacctgatca gaaaaactca tttgaatctt tactaagagc tttagctagt gcaccagtac      2760
     tccagcagaa cgaccctagc aaaccatatg tgctacgaac tgatgcctca tcttacgcct      2820
     taggcgcggt cctagttcaa ggtgaaggtt cagaagaaca tcctgtcgaa tatgctagca      2880
     gattactaac aaccgcagaa cgaaactact ctaccacaga acgtgaagct ttagctgttg      2940
     tttggagttt gaataagttt agaggttact tagataactc gtcagttatt ctagtgacag      3000
     accatcagcc tctacgatgg ttgctaacgc taaaatctcc aacaggtcgc ttagctcgtt      3060
     gggctatgct catacagagt tacaatatca aggtacaata tatacctggc aaacataatg      3120
     tcttagcaga tatgctttcg agacctccat gtatccatac tgatgtagaa tcatgtgaca      3180
     tttgtcttgt tacggtcgat tttcccaaaa ggacaaatgc tgaaatcaga acggagcaac      3240
     agagagatcc tgaactgaag aaaatacttg acagttttga acaaattggt aacaataact      3300
     atagtcaatg gacagcaaga ggatacattg ttagtagtgg aatactatac aaatatgctg      3360
     atggtgactc cgaagaagct caattggtag taccaacaca tgagagacaa cgagtattgc      3420
     aagagcacca tgattcacct actgctgctc attatggtac tgaacggaca taccaaagaa      3480
     tagctcgatt atactatttt actggtatgc gacaatacat taacgattat atcaagaatt      3540
     gcatcgaatg tcaacgctac aaggccacca atcaaaaacc agctggatta gtgaacccca      3600
     aatataatca acgacgaagc ctagtattga tttattcggt ccattgccaa caataacctt      3660
     ggaaaacaat gggtattcat cattgaagat acagctacaa aatgggtaga attatttcct      3720
     ttggtgaaag ctactgcaga agaatgtgcc aagacgctga ttaacaaagt attcctacgt      3780
     tatggctttc cacgcagaat tatctcagac aacggagttc agtttgtgtc acatattatg      3840
     caacatgttt gtgataaact gaagattaaa caaaacttga ctcctttatt tcatcctcaa      3900
     gcaaacatgg tagagaggaa gaacgtgacc tcaagccaaa ttagctttaa tggtatctga      3960
     tcatacaacc tgggctgaaa aattaccaaa tatacgttat gaatagtgcc aagtgtcaaa      4020
     caaccggttt cagtgctgct tacctcaact ttgcaagaga aatgcgaaat ccggatgaag      4080
     tacagaatga tccacggcct gttagggaaa atgaaaattt tatcccagaa ataacacctt      4140
     acctgcaagg aatgtttaca acgattatag aagctaaagg ccagcatgaa aaatgtcaag      4200
     atcgtcaaaa gaagtatgcc gataattaac gatcgacacc gcctactttt gatgttggag      4260
     acaaggtttt tgtgacgcta catacgaaga gtagccacac taaacagagt actactaaat      4320
     ttgatccgaa aagggacgga ccctatgtca taactagaca ggtttcgccc gtctcttatg      4380
     aaattgccaa cattgatact ccaggacaac ctttaggcat ttatcactgt agcaacatat      4440
     tcaagtatcg tggagatgac gctacagaac ctaaagttcc tatcagaaga agaggccgcc      4500
     cgaagaaaac caaccacact agtgctggtc cctcgacatc tcaatgtcca cggaaccaga      4560
     gggggagac                                                              4569
//
ID   Gypsy-13_SiOr-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 382-382 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 300 BP; 81 A; 61 C; 74 G; 84 T; 0 other;
     tgtaacaata ttttacggtc gctaccggca tagtggtctg ccgcgtccgg tttgggctga        60
     accatcgtag gccatcgccg aagacgaccc tgagcgccgt cgtaacggtc aagaagtggg       120
     agatgcgcgc gaatggaatt cgggcctacg tgcagaaagg cagttagcga caagagagaa       180
     gtgaacgaag cggctgtttt taactttgaa agctctctgc aatgtataac ccgttctttt       240
     ttttttaata gataagtgaa ttaattacat taatgaattt taatttcact tcctatcata       300
//
ID   Gypsy-13_SpEx-I repbase;    DNA;    INV; 4468 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4468
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4082-4082 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..4260
FT                 /product="Gypsy-13_SpEx-I_1p"
FT                 /translation="MAVGKVREFEIKSGNWSSYIERLEMYFIVNKVEDKLK
FT                 LPTLISFMGEEAYDLLSTLASPLRPSELSYNKAVEILAAHLQPKPSIVAER
FT                 YKFRQRRQLTNESIADYVTELKKLAKFCEFKSALDDNLRDQLVCGLSSEMI
FT                 RQKLFAEENLPYNKAVSLALSLEAAERDASAVEPGNGEAAEGIHKLNLYSC
FT                 PRCGGKHKSNDCTFKSYVCSGCGETGHLRRMCQKIARREERADSASGGGRY
FT                 GSSSYSRGKRVSVRGNGGRATVGGAKRGQRNTARGNGTRIFYKQDEEQDEE
FT                 VHTESMNNNMYSTDDTDECDDEPMYQLSLSNYKPVRISVKVQNHLLKMEID
FT                 TGSALSCIRKTVYDELFSDLPLKKCNLSLKFYDGSIIQPLGFIETTVNYHG
FT                 VVKTLDLYVFNKGITNLLGRQWLAELNIPIKVCKVNSSTNHIVNHLNNGLC
FT                 SNQMIQTIVSRHESLFDGTLGTFTGGVAELKVREGAVPVYCRARPLPYALR
FT                 ERVDAELDAMLKTGVIEPVDHSDWATPLVVVRKADGGLRICADYKVTLNKV
FT                 LVIDRFPIPKMDDLFSELSGNMYFTKLDLSQAYNQVVLSESSRNYTVINTH
FT                 RGLFKYCRLVYGLSSSPGIFQKLMVNMFKNTPNVTIFYDDILIRNKDLPSH
FT                 LESIEKVLKILESNGLKIKKSKCEFLATEVKYLGFIIDRSGVRVDPDKVKA
FT                 IVTMPHPTNVSELKSFLGMVNFYGKFIKNLSMHLAPLYELLKKGNHWKWGP
FT                 QQNTAFIQVKKFLCSTSTLEHFDLNKESVLTVDASARGLGAVLAQRTPGGC
FT                 DERVVAFASRSLTAHEVHYSQIHKEALAIVFAVDKFHQYLYGRKFVLRTDH
FT                 KPLVSIFGSNIGIPSTAASRLQRWAIKLSAYDFTIEYIKTDKNAADVLSRL
FT                 IYSQKNEVTCEEIKLPEQTYLHFATEALLLDYNVLKKETRRDPILCRVLSY
FT                 IVDGWPSEVEIKELKPYFNRRRELYCELGCIMWGHRVVIPPSCYKKVLREL
FT                 HDSHMGIVKTKSLARSYVWWPGIDEALEAECRACGVCAAMADAPPAHASHS
FT                 WPWPSRPWSRLHIDFLGPISGVTYLIVVDSCSKWIEAIKMNKTTAQAVITV
FT                 LRKLWSQFGLPKQIVSDNGPPFTSVEFQKFLEHNGIEHIFTAPYHPSSNGA
FT                 AESAVKICKRAIKKALKDNLDVDIALSRFLLTYRNTEHTTTGDSPAKILQG
FT                 RSLRLRLDNLKPEREFRVAIRQARSEYYKGGSQRLFETGAQIWYREYRSSD
FT                 KWQPGTIIKRLGNTDYSIRTSFGTEIHRHVDQLRQRVIASNVPNTTVGLDI
FT                 PTKLEINQKSRKSLAIPSTNVEVPDGSEQERNITNPAIPRSPRLDSETGPD
FT                 VVTPTSPQPDSNVSNVPLDQNKTAPSTGVGKNRPQRFRKPPVRYGFEEID"
XX
SQ   Sequence 4468 BP; 1374 A; 795 C; 1046 G; 1253 T; 0 other;
     gtggcgacga ggaaaaacaa aatggcggtc ggaaaagtgc gggaatttga aataaaatca        60
     gggaattggt catcctatat cgaaagactc gaaatgtatt tcatagtgaa taaagtggaa       120
     gataagctta aattacctac tttaatttca tttatgggag aagaagcata tgatcttcta       180
     tctacattag ccagcccatt aagaccgtca gaattatctt acaataaagc tgtcgaaata       240
     ttagctgctc atttacagcc taaaccatct attgtggctg aaagatacaa gtttcgacaa       300
     cgacgtcaac ttaccaacga atctatagcg gattacgtga cggagcttaa aaaacttgca       360
     aaattttgcg agtttaaatc tgccctggat gataatctta gagatcagtt ggtatgtggc       420
     ctgagtagcg agatgattcg acaaaaattg tttgcggagg aaaatttacc atacaataaa       480
     gcggtcagtc tggcgttgtc attagaggct gcagagcggg acgcgagtgc agtggagcct       540
     ggcaatgggg aagcagctga aggaatacac aagctgaacc tttacagttg tccgagatgt       600
     ggcggcaagc ataaatcaaa cgattgtaca tttaaatcct atgtgtgcag cgggtgcggt       660
     gaaacaggac atttgagaag aatgtgtcaa aagattgcaa gacgggaaga gcgggcggat       720
     tctgccagtg gtggtggtcg gtacggatca tcatcatatt cgagggggaa acgtgtatct       780
     gttcgcggca acggcgggcg cgccacggtc ggcggggcaa agcgcgggca gcgcaatacg       840
     gcgagaggta acggaacacg aatattctac aagcaagacg aggagcaaga tgaagaagtg       900
     cacactgaaa gcatgaataa taatatgtac tctacggacg ataccgacga gtgcgacgac       960
     gagcctatgt atcaattatc actaagcaat tataaaccgg tgcgtatatc tgttaaggtt      1020
     caaaatcact tacttaaaat ggaaattgac acaggttcag cattgtcgtg cattcgtaaa      1080
     acagtgtatg acgaattatt cagtgatttg cctttaaaaa aatgtaattt aagtttaaaa      1140
     ttctatgatg gttctattat tcaaccttta ggtttcatag agacaactgt taactatcac      1200
     ggtgtagtta aaactttaga tttgtatgtt tttaataaag gaattacgaa tttattaggt      1260
     cggcaatggt tagccgaact caatataccg attaaagtgt gtaaggtcaa ttcgagcacc      1320
     aatcatatag ttaatcatct taataatgga ttatgcagca atcagatgat ccaaacaatt      1380
     gtttctagac atgagtccct gtttgatggt acattgggca cttttacggg cggtgtggct      1440
     gagttgaagg tgcgagaggg agcggtgcct gtgtactgtc gcgcgcgtcc tctaccgtat      1500
     gcgctgcgtg aacgcgtcga cgcggagcta gacgcgatgc tgaagaccgg cgtcattgag      1560
     ccagttgatc actccgactg ggccactcca ctggttgtgg tacggaaagc agatggcggt      1620
     ttaagaattt gtgccgatta caaggtaacc cttaacaaag tcttagtgat cgacagattt      1680
     ccgattccga agatggacga tttatttagc gaacttagtg gaaatatgta ttttactaaa      1740
     ttagatttgt cgcaagcata taaccaggtg gttttatctg aaagctctag aaattacaca      1800
     gtaattaata cacatagggg tttattcaaa tactgtcgtt tagtttatgg tttatcttcg      1860
     agcccaggga tttttcaaaa actaatggtg aatatgttca agaacacacc caatgtaacc      1920
     attttttatg acgacatctt aataaggaat aaagacctgc cttcgcattt agaatctata      1980
     gaaaaagttt taaaaatttt ggagtcaaat ggattaaaaa ttaaaaaaag taaatgcgag      2040
     tttctggcta cagaagtaaa atatcttggt tttatcattg ataggagtgg tgtacgagta      2100
     gatccagaca aagtaaaggc tattgtcact atgccccatc caacaaatgt ttctgagcta      2160
     aaatcttttt tggggatggt aaatttttat gggaagttta ttaaaaattt aagcatgcac      2220
     ctagcaccgt tgtacgaact tttgaaaaag gggaatcatt ggaaatgggg tcctcaacag      2280
     aatacggcat ttatacaagt caaaaaattt ttgtgtagta ctagcacact cgagcatttt      2340
     gatctgaata aggaatctgt tttgactgtc gacgcgagcg cgcgcggatt aggtgcggtg      2400
     ctggcgcagc gcacacccgg cggctgcgat gagcgagtag tggcgtttgc ctcacggtcg      2460
     ctcacggctc acgaggtaca ctacagccaa attcataagg aggcattagc gattgtattt      2520
     gctgttgaca aatttcatca gtatttatat ggaaggaaat ttgtactgcg tacagaccac      2580
     aagccgcttg ttagtatttt tggatcaaat ataggtatac caagtacggc ggccagtcgt      2640
     ctgcagcgtt gggcaattaa actatccgct tacgatttca cgattgaata tattaaaaca      2700
     gataagaatg cagctgacgt tctatctcga ttaatttatt cgcaaaaaaa cgaggtaaca      2760
     tgtgaggaga ttaaactacc tgaacaaacc tatttacatt ttgcaacgga agctttgctc      2820
     ttagattaca atgttcttaa aaaggaaact cgacgggacc ctattttatg ccgggtttta      2880
     agttatatag tggatgggtg gccgtccgag gtcgaaatta aggaactaaa gccatatttt      2940
     aatagaagac gagaattata ttgtgaacta ggttgtatta tgtggggtca tcgggtagtt      3000
     ataccaccat cgtgttataa aaaagtcctt cgtgagcttc acgactcgca tatgggaata      3060
     gtgaagacta aatcacttgc tcgaagttat gtgtggtggc cgggcataga cgaggctctg      3120
     gaggcggagt gtcgcgcgtg cggcgtttgt gctgcgatgg ccgacgcacc acccgcgcac      3180
     gcttctcact catggccttg gccttcgcga ccttggtcac ggttgcacat cgactttttg      3240
     ggaccgatat cgggagtaac atatcttatt gtagtcgact cgtgttctaa atggattgaa      3300
     gctattaaaa tgaataaaac gactgcgcaa gctgtcatta ccgtattacg caaactatgg      3360
     tcgcagtttg gtcttccgaa gcaaatcgtt agtgataacg gaccaccatt tacgagtgtt      3420
     gaatttcaga aatttttgga acataatggt attgaacaca tctttacagc cccttaccac      3480
     ccatcttcga atggtgcggc tgaaagcgca gtcaaaattt gtaaacgcgc gataaaaaag      3540
     gctttaaaag ataatttaga tgttgatata gcgttatcca gatttttatt gacataccgg      3600
     aatacagaac atactactac tggtgatagt ccagccaaaa tattacaagg gcgtagtctt      3660
     cgtttaaggt tagataattt gaagccggaa agggaatttc gagtagcgat acgtcaggca      3720
     cgtagtgagt actataaggg gggttcacag cgtttattcg agactggtgc tcaaatttgg      3780
     tatcgtgagt ataggagctc agataaatgg caacctggta caataattaa acggttaggc      3840
     aacacagatt attctataag aacaagtttc ggtacggaaa tacacagaca tgtcgatcaa      3900
     ctgagacaaa gggttatagc cagtaacgtt ccaaacacta cagtagggtt agacatacct      3960
     acaaaattgg aaataaatca gaaatcacgc aagtctttgg ccatcccctc aaccaatgtt      4020
     gaggtaccag acggcagtga gcaggagcgt aatattacaa atcctgctat tccaaggagc      4080
     cctaggttgg attccgaaac aggcccagat gttgtcacgc ctacaagccc tcaacctgat      4140
     tcgaatgtgt ctaatgtacc attagatcaa aataagacgg ctcctagcac tggggtagga      4200
     aaaaaccgtc cacaaagatt tcgtaaacca cctgttcggt atgggtttga ggaaatagat      4260
     taataataat tttattttta accaagtgta ggttactgtt actaaggttt tttttttctt      4320
     gtttttattg ttgttgtgtt gtatgttcat taacacttat attagttaaa taagcatgta      4380
     cctagttaag taagacttgt atgttactta tagttttaag tttatgatag ttaatctaat      4440
     tgttagtaga actaaataag ggtggagg                                         4468
//
ID   Gypsy-13_SpEx-LTR repbase;    DNA;    INV; 90 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-90
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4142-4142 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 90 BP; 23 A; 16 C; 19 G; 32 T; 0 other;
     tgttatgttt tagttctaat aaggtgttgc aggtggcgct tcagtcttgc aataaacatt        60
     gctccaaaca cacgtgcgtt tgatttaaca                                         90
//
ID   Gypsy-13_SpFr-I repbase;    DNA;    INV; 4244 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4244
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1850-1850 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..1113
FT                 /product="Gypsy-13_SpFr-I_1p"
FT                 /translation="MEKLRFTFTILGGSDGKTNLICITSIETPDGRLFDIP
FT                 DDLKPVSKHIAITATDYFTKIKNSLKKRHQSRKIWIPLTEDLKKCYLDEGE
FT                 NVQFGDQYLDEITPEAEHPGNNVSVRGEYKKLGKIAERFLIEKFSGKTSSV
FT                 NQWMDEFEKECTRFEILKDTEKIEILKYLLEKQCLDWYTSMLIKHTINAGW
FT                 ELWKTNFCETYGSKGWSQIKYAFTYKYQGGSLLEYAIKKERLLLEINSKID
FT                 TQTLINLTIMGLPDYIMYKMDKEVITSTANLFKEIGKHEQTGKNYNSKFKR
FT                 NSSDSQLKSEKMPCKICEKLNKGNRFHAEEKCWFNKQSDENKDYNYKGNYR
FT                 RNVNNTVLDVELSDNEPKNE"
FT   CDS           1101..4181
FT                 /product="Gypsy-13_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="AKKRVITPLIEVKLTLEDKLDILGIYDSGSNVSLINS
FT                 KLLRLKKQGHNVYKNANLITINGVKNTKGFTIIKIKIFNIEKQIGVYVVEG
FT                 ENFKYDFLIGLDIIKEFKLIQDENLEITQKPQEKKTEGGQHFENYMKTSTN
FT                 KEDLNIVNFNEHVKDEEFNMDLSHLNNEQKSDINKLISKYKSSFAKDKYDI
FT                 GTVKNYEAHIDLLVDTYCHKRPYRCSLEDKLEIEEQVSKLLERDLIEQSYS
FT                 PFAAPVTLAFKKEDNRKTRLCIDFRDLNKIVVPQAQPFPLIEDLVTKTRNC
FT                 KYFSTLDINSAFWSIPLRVEDRKKTAFVTQEGHYQWTCLPFGLKTSPAIFQ
FT                 RILSNILKKYKLKDFAVNFIDDILIYSKSYADHINHLSQLLEAIQEEGFRL
FT                 KFTKCRFATNSVKYLGHVIENNTVRPLRDNLISIKEFPTPRNQKNIRQLLG
FT                 KINFYREFIPNSSTILEPLHNLLRKNQRFIWSNDCQKAFEKIKQLLCSQPI
FT                 LEIFDQDLPINIYTDASIAGIGAVFKQIQPDGKEKPVAYFSKKLNEAQKKK
FT                 KAIYLECLAIKEAIKYWQYWLIGKRFTVFSDHKPLANLNIKSRTDEELGEL
FT                 SYYLSQYDFTIKYTPGKDNVEADCLSRNPVIEPNKEIHEQLKIINLITLSD
FT                 ILTDQKNNEDIKKYKNKLIYKDNIYFKKIKKQEKIILSEEFSIKFVKLIHE
FT                 NMCHIGIKQMQKKIGKLYTARNLTKNITKTCKLCDICIKNKTRGQLKYGLM
FT                 SYLGPATKPLEIVSIDTIGGFGGSRSTKKYLHLLVDHFTRYAYIVNSKTQS
FT                 AKDFIKLLNNVPNCHEIGIVLTDQYPGINSQEFKTFLQKKSITLIFTAVNS
FT                 PFSNGLNERLNQTLVNKIRCKLNEKPNTTAWTSIAHNCVDKYNNTEHSITG
FT                 FAPRYLMDGTDVSLIPNELKLEKQTSDWMRDRKTAIERSIKSHEYNKTIVN
FT                 KKRIKYNFEVGDMVYVENGHKLNRRKLDELRIGPFKIEEKVSQSIYKINTG
FT                 HKKKESNLFHITKLTPVPIPE"
XX
SQ   Sequence 4244 BP; 1805 A; 615 C; 713 G; 1111 T; 0 other;
     aaacgacatt tttagtgaag aataatggaa aaattacgat tcaccttcac aatattagga        60
     ggatctgatg gaaaaactaa tttaatttgc ataacgtcaa tcgaaactcc agatggacga       120
     ttatttgata taccggatga tttgaagcct gtaagtaaac acatagccat aactgctaca       180
     gactatttca ccaaaatcaa gaactctctg aagaaaaggc atcaatcacg gaaaatatgg       240
     atccccttaa cagaagactt aaaaaaatgt tacttggatg aaggtgaaaa tgtacaattt       300
     ggtgatcaat acctagatga aattacacct gaagcggagc atcctgggaa taatgtcagt       360
     gtgagaggtg aatacaaaaa gttaggaaaa atagcggaaa gattcttaat tgagaagttt       420
     tcaggaaaaa catcaagtgt taatcaatgg atggatgaat ttgagaagga atgcacccgt       480
     tttgagatat taaaagatac agagaagatt gagattttaa agtatttgct tgaaaaacag       540
     tgcttagatt ggtacacaag tatgttgata aaacatacta tcaatgcagg atgggaatta       600
     tggaaaacaa atttttgtga gacatatgga agtaaaggtt ggtcacaaat taaatatgct       660
     tttacttata aataccaagg agggtcatta cttgaatatg ccattaaaaa agaaagatta       720
     ctattagaaa taaatagcaa aattgacaca caaacattga ttaatctcac cattatgggt       780
     ctacctgatt atataatgta caaaatggat aaggaagtta taacttcaac tgcaaatctt       840
     tttaaggaaa ttggtaaaca tgaacaaaca ggaaaaaatt ataatagcaa atttaaaaga       900
     aattcatctg acagtcaatt gaaaagtgag aaaatgccct gcaaaatatg cgaaaaatta       960
     aataaaggga accgttttca cgccgaagaa aaatgttggt tcaataaaca atctgatgaa      1020
     aataaagatt ataactacaa gggaaactat agaaggaatg tgaacaatac agtgctagat      1080
     gtggaattaa gtgacaatga gccaaaaaac gagtaatcac accattaatt gaggtaaaac      1140
     taacattgga ggacaaatta gatatattag gtatatatga ttctggttcc aacgtatcct      1200
     taatcaattc taagttatta agattaaaaa aacaaggcca taatgtatac aaaaatgcaa      1260
     acctaataac aattaatggt gtcaaaaaca caaaaggatt tacaataata aaaattaaga      1320
     tctttaatat agagaagcaa attggtgttt acgttgtaga gggagaaaac tttaaatatg      1380
     attttctaat tggacttgat ataataaaag agtttaaatt gatacaagat gaaaatttag      1440
     aaatcacaca gaagcctcaa gaaaagaaaa cagaaggagg acagcatttt gaaaattata      1500
     tgaaaacaag cactaacaaa gaagatttga atattgtaaa ttttaatgaa catgtaaaag      1560
     atgaagaatt taacatggat ctgagtcatc tgaataatga acaaaaatct gatataaata      1620
     aactcataag taaatacaaa tcaagctttg caaaagacaa atatgatatt ggaactgtaa      1680
     aaaactatga agcacacatt gatctacttg tggatacata ctgtcataaa agaccctaca      1740
     gatgctcatt agaagataaa ctggagatag aagaacaagt gagtaaattg ctagaaagag      1800
     accttataga acaatcttac agcccatttg cagcaccagt aaccttggct ttcaaaaaag      1860
     aagacaatag aaaaacaaga ttatgtattg atttcaggga cctaaacaaa atagtggtac      1920
     ctcaggctca accattccct ttgattgagg acttagtaac caaaacaaga aactgtaagt      1980
     acttttctac attagacatc aactcagcgt tctggtctat tccattgcga gtagaagata      2040
     gaaagaaaac tgcttttgtc acccaggaag gccattacca gtggacatgc ttgcccttcg      2100
     gtttaaaaac ctcacctgca atattccaaa ggattttaag caacatacta aagaagtaca      2160
     aattaaaaga cttcgctgta aattttatag atgacatttt aatttattca aaatcatatg      2220
     cagatcacat aaatcattta tcacagcttt tagaagcaat tcaagaagaa ggattccggc      2280
     taaagttcac caagtgtcga tttgcaacta attctgtaaa atatttagga catgtaatag      2340
     aaaataacac tgtaagacca ttgagagaca acttaatttc aataaaagag tttccaacac      2400
     caagaaatca gaaaaatatt cgacagcttt taggaaaaat caacttctac cgtgagttta      2460
     tacctaacag ttcaactatt ttagagccac tacataattt actgagaaaa aaccaacggt      2520
     ttatttggtc aaatgattgt caaaaagctt ttgagaagat aaaacagttg ctgtgctcac      2580
     aacccatttt agaaattttt gaccaagacc tgccaataaa tatatacaca gatgcatcaa      2640
     ttgcaggaat tggagctgtg tttaaacaaa ttcaacctga cggaaaggaa aaacctgtgg      2700
     catatttctc aaaaaaatta aatgaagccc agaagaaaaa gaaggcaata tacttggaat      2760
     gcttagctat taaagaagct ataaaatact ggcaatactg gttgataggc aaacgtttca      2820
     cagtattctc tgaccacaaa cctttggcaa acttaaatat caaatctaga accgatgaag      2880
     agttgggaga actgtcttac tatttatcac aatacgactt cactataaaa tatacaccag      2940
     gaaaggataa tgtagaagct gattgtttaa gcagaaaccc agtaatagaa ccaaataaag      3000
     agatacatga acagttaaag ataattaact taataacatt gagtgacata ttgacagatc      3060
     aaaaaaataa tgaagatata aaaaaataca aaaacaagtt gatttataaa gacaatatat      3120
     atttcaaaaa gataaagaaa caagaaaaaa taatactatc agaagaattt agtataaaat      3180
     ttgtaaaatt aattcatgaa aatatgtgtc acataggcat aaaacaaatg caaaagaaaa      3240
     taggaaaact atacacagca aggaatttaa ctaaaaacat aacaaaaaca tgtaaattat      3300
     gcgatatatg tataaagaat aagacaagag gacagttaaa atatggttta atgtcgtacc      3360
     taggtcctgc tacaaaacca ttggaaattg tctcaataga cacaattggg ggattcggag      3420
     gttctaggtc aactaagaaa tatctgcacc tcttagtcga tcattttact cgatacgctt      3480
     atatagtaaa ttcaaagaca cagagtgcta aagacttcat aaaactttta aataatgtac      3540
     cgaattgtca tgaaattggt atagtactca ctgatcagta ccccgggata aattcacaag      3600
     aatttaaaac atttttacaa aaaaaatcta tcacactaat tttcactgca gtaaactcac      3660
     ctttttccaa tggactcaac gagaggctta accaaacact ggtaaataaa ataagatgca      3720
     agctaaatga aaaaccaaat actacagcat ggacgagtat tgctcataat tgtgtagaca      3780
     aatataacaa tacagaacat tcaataacag gttttgcacc aagataccta atggatggca      3840
     ccgatgtctc actaataccc aatgaactaa aactggaaaa acaaacaagt gactggatga      3900
     gagatagaaa aactgcaata gagagatcta taaaatcaca tgagtacaat aaaacaatag      3960
     taaataagaa gagaataaaa tataatttcg aagtaggtga tatggtatat gttgaaaatg      4020
     gacacaaatt aaatagaaga aaattggatg agttaaggat tggtccattt aaaatagaag      4080
     aaaaagtatc acaatcaata tacaagatta atacaggcca caagaagaag gaatcaaatc      4140
     tgtttcatat tactaaactg actcctgtgc ccataccaga ataaataaag ggatattgga      4200
     aaagtgaaaa tttccagagg aattttcaat ttaagggggg gaga                       4244
//
ID   Gypsy-13_SpFr-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-318
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1867-1867 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 318 BP; 112 A; 33 C; 59 G; 114 T; 0 other;
     tgtaaaggaa ataatggtta catgttgaga cgataggtgg cgctgacgat agtgtcggtg        60
     gagacgggag acgtcatgat tttttatttg tcaaagaatt gaatttaatt tattttgtta       120
     taaactaatt agtggaataa gagcgacaat ataactttaa atgtcgtttc tttcatttac       180
     aggtaaagtt ttaccaatac agtaatgtta tgttgtgatt attcattgta aaatactaaa       240
     ataaaaaact ttcatttaca gagcaacgca tggtttaatt tgtcgtaaat tccataaaaa       300
     tagaataatt gtcttata                                                     318
//
ID   Gypsy-13_TrNi-I repbase;    DNA;    INV; 4390 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4390
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 217-217 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..947
FT                 /product="Gypsy-13_TrNi-I_1p"
FT                 /translation="MDSEVITNLLKAIRDAVSTTQQKDDDIALPLFDPDKN
FT                 DCGAKSWCDSIEALRADLKWSSIKTAAKAGKSLRGSAVTWFESWEPSEGRS
FT                 WEKFSTDIIDAYPEKKNLSERLSKAVLHTSDSADSYGEYAREKIRLYRNTK
FT                 ISFTDEQLIELVCGGITDVDVRMASLNSGVTTTAALISLLSIYAKSKKRPL
FT                 ESSDSGPSGIKVPKLSGEKKCFTCNKAGHVQSFCPKNRQTSVHSSTTFQAP
FT                 QSSRPNDPRTIICTYCKKIGHTESVCYHKQRAESNNSSSITIVPNKAVNFL
FT                 ERPN"
FT   CDS           929..4003
FT                 /product="Gypsy-13_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFRKTELNLTRVIVNGVPIDSLIDTGANCSLIKESVA
FT                 RRLGCHFSPTSIYLNGIGSNKIYVFAIITVLVQFQEVCLELDIHVVRDNDF
FT                 QYNLLIGRNAVQYPDVQIVTDSLGSQLFRKPVQTKTEVNVLTDISELNELT
FT                 SKIEHLDLELQEKVRKIFHKYPSVLDETSTVKTGELKLRLVKNEIIYYRPY
FT                 RLAPIEREKVNEIVQELLKQNIIRESDSPFANPVILVKKKDGSDRLCIDYR
FT                 ALNKILEKDRYPLPLIEDQIDRLGRAKYFISIDMKNGFYQIPVASDSIKYT
FT                 AFVTPDGHYEFLKMPFGICNGPSVFQRAITKAVQHLKFLLVYIDDILIPFS
FT                 TIDEGLCYLNETVQALSHAGFTINIKKCKFFVESIEYLGRVISREGVRPSD
FT                 TKVADLVNSPVPSNVKQVRQFMGLASYFRKFIPNFAARTASITKLTKNNEK
FT                 WEWGAQQDAARDYVIKHLSSKPLLTVFDPKFQTELYTDASSLGYGAILVQK
FT                 INNNKKVIAYFSRRTSPAESKYCSYDLETLAIFNALKHFRVYLLGIKFKIF
FT                 TDCNSIKATMNKKDLTPRVARWWTFLQDFDFEIVYKKGKYIGHVDFLSRNP
FT                 VENPSPLKSNNNETQSETKVVNLIEEPQSWLEIAQQNDPETQNLISQVVSG
FT                 ELDENRYFLHNHLLFYKVRPNQSKLYVPKGTRFRLLRLFHDENCHVGFDKT
FT                 FKKLSEYFWFPRMSAFIRKYLKHCLICIERKGHSGPKQGFLHPINKSPIPF
FT                 HTIHIDCTGPFTLTSEGFKYILLIVDGFTKFCLLKPLKTLNAQELVPIIRE
FT                 TITLFGTPSTVITDRGTNFSSTQIRSLFNELHIEHHMISTGTPRGNGQVER
FT                 YVSTVIDMLNTTCNGSSDWPSGLWKVQQSINTTVQKSTGFTPIRLLIGCNA
FT                 NIPSIQAHLNDIIISENNFDVRADRELAYQRLCSEADKFKNRFDVVRRDNK
FT                 VFNVGDTVYVNQDHRRRDKLSPRFKGPYEIIGILPHDRYSLRGVGNLRNIT
FT                 IAKDKLRLWPGVWVDENNV"
XX
SQ   Sequence 4390 BP; 1453 A; 783 C; 810 G; 1344 T; 0 other;
     tcagaagtgg gatacctcct tcgcctctca tagttaattc attttattat atttttagga        60
     tggattctga agtgattacc aatcttctga aagcaatccg ggatgctgta tctacaaccc       120
     aacaaaaaga tgatgacatc gctctgccac tatttgaccc tgacaagaat gattgcggag       180
     ccaagagttg gtgtgacagc attgaagctc tccgtgccga tttgaagtgg agcagtatca       240
     agacggcagc taaagctggt aagtctctca gaggttccgc tgtaacttgg ttcgagtctt       300
     gggaaccatc agaaggtaga tcttgggaaa agttttctac ggacattatc gatgcctatc       360
     ccgaaaagaa aaacttatcc gagagactta gcaaggcagt tttacataca tcagattctg       420
     ctgattctta tggggagtac gctagagaaa aaataagact gtatcgaaat acaaaaattt       480
     ctttcaccga tgaacaactc attgaattag tttgcggtgg gataactgat gttgacgtta       540
     ggatggcctc actcaatagc ggcgtcacta caactgctgc ccttatatct ctcctctcaa       600
     tttatgccaa atccaaaaag agaccgttag aaagtagtga ttcaggtcct tcgggaatta       660
     aagtacccaa actttctggt gaaaagaagt gtttcacttg taataaagct ggccatgtac       720
     agtcattttg ccctaaaaat aggcaaacat ctgttcacag ctccactact ttccaagccc       780
     cacaatcatc tagacctaat gatcctcgta caataatatg tacatattgt aaaaagatag       840
     gtcacactga atcggtgtgc tatcataagc aaagagccga gtcaaataat tcttcatcca       900
     ttaccatagt accaaataag gcagttaatt ttttagaaag accgaactaa acttaactcg       960
     tgtcatagtt aatggagtac caattgattc attaatagac acaggagcca attgtagttt      1020
     aataaaagaa tcagtagcaa gacgcttggg atgccatttc tcaccaacgt caatttattt      1080
     aaacggaata ggatcaaata aaatttatgt ttttgctatc attaccgtgc ttgtccaatt      1140
     ccaagaagtt tgtttagaat tagatataca tgttgtcagg gataatgatt ttcaatataa      1200
     tttacttata ggcagaaacg ctgttcagta cccagacgtg cagattgtta cagattcatt      1260
     aggtagtcaa ttgtttagga agccagttca aaccaagacg gaagtaaatg tacttactga      1320
     tatatcagaa ttaaatgaat taacttcaaa aattgagcat cttgatttag aactgcaaga      1380
     aaaagtaaga aaaatttttc ataaatatcc ttccgtcttg gatgagacta gtacagtaaa      1440
     gaccggtgaa ttaaaattgc gattagttaa gaatgaaatc atatattatc gcccttatcg      1500
     tctggcaccg attgagaggg agaaggttaa tgagatagtt caagaacttt tgaaacaaaa      1560
     cataatccgg gaaagtgatt ctccttttgc aaacccagtt attttagtca aaaagaagga      1620
     tggaagtgat aggctctgta tagattatag agcattaaac aaaattttgg aaaaagatcg      1680
     ataccccctt cctctcatcg aagaccagat agacaggcta ggtagagcta aatatttcat      1740
     ttctatcgac atgaaaaacg gattttacca aattccagta gcttctgatt ctataaaata      1800
     cactgctttc gtgactcccg acggccatta cgaatttttg aaaatgccct ttggcatctg      1860
     taatggaccg tctgtttttc aaagggcaat cacgaaggcc gttcaacact taaagtttct      1920
     actagtctat atcgatgaca ttctcattcc attttcaacg atagatgagg gtctgtgtta      1980
     tttaaacgaa actgttcaag cactgtccca tgccgggttc actataaata tcaaaaaatg      2040
     taaatttttc gtcgaaagca tagaatattt aggtagagtt atttcacgag aaggtgttag      2100
     gccaagtgat acaaaggtag ctgatctagt aaactcccct gtccctagta acgtaaaaca      2160
     ggtacgccag tttatgggtc ttgccagtta tttccgcaaa tttatcccaa atttcgctgc      2220
     tcgtactgct tccataacaa aactgactaa aaataatgaa aagtgggagt ggggagccca      2280
     acaggatgcg gctagagatt atgttataaa acatttatct tctaaaccct tattaactgt      2340
     gtttgatcct aagtttcaaa cggaacttta tacagacgct agctctctag gttatggtgc      2400
     aattcttgta caaaaaataa ataataataa gaaagtaata gcctacttca gcagacgtac      2460
     atcacctgca gaatctaaat actgttcgta tgatttagag actttggcaa tttttaatgc      2520
     attaaaacat tttagggtat accttctggg tattaaattc aaaattttta cagattgtaa      2580
     ttctattaaa gctacaatga ataagaaaga tttaactccc cgtgttgccc gatggtggac      2640
     ctttttacaa gactttgatt ttgaaatagt atataaaaaa ggtaaataca taggccacgt      2700
     tgattttctt agccgtaatc ctgttgagaa ccccagtcct cttaaatcta ataataatga      2760
     gactcaaagt gaaactaagg ttgttaattt aattgaagaa ccacagtctt ggttagaaat      2820
     tgcacaacaa aacgacccag aaactcaaaa tctgatttct caagttgtat ccggtgaact      2880
     agatgaaaat cgatacttct tacataatca tttgttattt tataaggtca gacccaatca      2940
     atcaaagctg tatgttccta aaggcacaag atttagactt ttaagacttt ttcacgacga      3000
     gaactgtcat gtaggatttg acaaaacttt caaaaaactt tctgaatatt tttggtttcc      3060
     tcgcatgtcc gctttcatta gaaaatactt aaaacactgc ttaatatgta tcgaacgtaa      3120
     aggtcattca ggtcccaagc aagggttttt acatcctatt aataaaagcc caattccttt      3180
     tcacacgatt catatagact gtacaggtcc atttacacta accagcgaag gtttcaaata      3240
     tattctactt atagtggatg gatttacaaa attttgctta ttgaaacctc tcaaaactct      3300
     taatgcccaa gaacttgtac ccattataag agaaaccatt actttattcg gaactccgtc      3360
     aacagtaata acagataggg gaactaattt cagctccacc caaattcgtt ctttatttaa      3420
     tgaattacat attgaacacc atatgatttc cacgggtaca ccaaggggta atggacaagt      3480
     ggaacggtat gttagtactg ttatcgacat gttaaatact acatgtaatg gctcgtcaga      3540
     ctggccaagc gggttgtgga aagtacagca gtcaattaat accactgtcc agaaatctac      3600
     cggtttcaca ccaatccgtt tgctcattgg ttgtaatgct aatattccgt ctatccaagc      3660
     tcatctaaat gatattatta tttccgaaaa taactttgat gtaagggcgg accgcgaact      3720
     agcttatcag cgtttatgtt cagaggccga taaattcaaa aaccgttttg atgttgtaag      3780
     gcgagataac aaggttttta atgttggtga caccgtatat gtaaaccaag accataggcg      3840
     tcgtgataag ctaagtccca ggttcaaggg tccttacgaa ataattggca ttctaccaca      3900
     tgataggtat tctcttagag gagtaggtaa cctaaggaac ataaccatag ctaaagataa      3960
     attgagatta tggccaggtg tatgggttga cgagaataat gtttaaaatt ataaagattt      4020
     aagtttaaaa attgtatttg tgtcatatag tgattataat taatgatttg ttaagaacaa      4080
     tgtatatttg atcatgttta attaaactgt tattttttaa atatttgttt tccttcaaca      4140
     ccacatgtta tgatgaatgt gaaattggaa ctgctgaagt tagttgtttt attctagcct      4200
     gtctcatgcg cagcaggtgt ggggctagat taatgtctaa aacaactgac cgttgttatt      4260
     tcgtcatctt aatgtgaaaa gatcgacggt aacaatgtaa aaaaatgtat tagactaagt      4320
     attatgtatg ttgatcatta aatgtaaggt aatttgtact tcgagaacga agtacatgtc      4380
     agtatggccg                                                             4390
//
ID   Gypsy-13_TrNi-LTR repbase;    DNA;    INV; 756 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-756
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 171-171 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 756 BP; 258 A; 100 C; 108 G; 290 T; 0 other;
     tgatggtatc tgtaaaatta ttttgatgtg attcaaattt tcaattgatc taccctcaaa        60
     gattaaaata gatacttttt aacagaactt ccggtatgaa atattattat gtcggttatt       120
     taaatattag taaaatatta aatattaatt acaaatcatc aaaataataa tttaaagtgt       180
     tagtagtaat tttaaaatgt aacttatttt aacggatgtt gttattagtt gtcaattgac       240
     ttagacggta cagtataaaa gcgatggacg gtgcgtcgcc agccagttga gcttcgacta       300
     cggaacggac tacttctctt caaagttaag tctcttgttt tattattaat tgattatgat       360
     atgatgacga tgtgtttttt tatgtattat acaatacaat tattatgttt tatgtacatt       420
     atgtgttatg tataaaagta ggaatggcaa tatcacttat gtagttgtct attccccttg       480
     ccttgttata attaaaatat acagttatca tgtttcatga aaaatagacc ttgagattac       540
     aactatattt acatttagta aacagtaaat tgcagaaata aaataaattt agatacatat       600
     ttgtttccta attattctcc taattatttc attttccctg tagtaaaatt cattagtcaa       660
     atgtcaaaat tacatcatga gtaaaacagt caaaacaaag cttatattgc tgtcctggcc       720
     tctcatcact aacgtggtct gtagcatttt ctgaca                                 756
//
ID   Gypsy-13_TrVa-I repbase;    DNA;    INV; 8927 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8927
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 258-258 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           771..1325
FT                 /product="Gypsy-13_TrVa-I_1p"
FT                 /note="SGNH hydrolase."
FT                 /translation="MTISRVCVLGDSNAVRLLSSPVFRVAFRDYQVTSLAR
FT                 SGASVADGLNFLKYFVENSSYIRSETVLIILLGTNDIKRGSAVTFPRTEFL
FT                 KVTRIARKLFSQVLICKLPPIPNREFSGRGDVTLVNRWIDSFRTVINIHIL
FT                 DLYSLCSSSSFFERRYRGSGRVDLLHLNRRGHCRLTDLLLDAVRNL"
FT   CDS           1373..3121
FT                 /product="Gypsy-13_TrVa-I_2p"
FT                 /translation="MSQPVNPYLLLKDQVSYELKVRNVNYPEDTNANDLRK
FT                 LLTDANNRGLVPLRDQVLQLSVEDEIAACDACFALVNAKIADYKADSGAGG
FT                 TLQILMRFRHLQNRLANLISFEHPDATATNIQQKLDAILTIRSNFEKYLSE
FT                 NPDESLVDAPPLPVLPSVVASSTPTRPPTVENHGGPPGPTHQQSLIELAEP
FT                 LGAQPGTIPHSSPLAPQPASSQGQNLVSWPIHNAVTGALLPGQPPYGGGFA
FT                 NYPMGPISPGDQLNSPPLGYVPPLAPAYNPSWGVVPPTEFPAQPLAMANRF
FT                 QQQHVSPAQDGVYEKYAKKAVLELALKDLKPLDGMNPHFLYKFVRKILELH
FT                 RRPGLSDLALFNLILPFTYGPLKGVLLTALHENLSFDAFHERALKTLIPSQ
FT                 MRERLKWSYYNRYQRDDESFTSFIADIKAANKILRLGCSERDVISTIITNC
FT                 APEERARFVFEARPNTYQELYSLSERVNDIRFAENERRSVLARSSAVQGQH
FT                 RTQEMGRSARPYPSVKLVAPDLQEASTSSEPAAVLAAGIDQMHLRGAPANS
FT                 PDRRLCFRCGSPNHIVRFCPKPNPNPPQGSKNAESR"
FT   CDS           3082..6390
FT                 /product="Gypsy-13_TrVa-I_3p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="PEPASRVKKRREPVVRHETPPTTAVFISSLAALQKEK
FT                 VWAIPSIALPCLAVDFCSLLVSALLDSCASRNLISANMFAKLPNRIIGEVN
FT                 EERIRISTAKEDQHLTSQCDAVIKIKVGGFSWRTRFLVVPGLHAEAILGLE
FT                 FILKTGLNFDLSEKWANFKFKPEVKIPIVQAFPTKQIVKPNFEEYSLQAET
FT                 GVDDGPDLSHLSAERADRVRNILAKFPQVLTKKLGRTNLINYDIELSDLKP
FT                 VRSPPYPLAPPKMEICRGLVQQLLDDDVVEPSISNYASPCFAVPKPNNKHR
FT                 LVVDYRKLNQKVQFESIPVPDLKTAFSFFGKARYFVVIDLNQAYHQIPLSQ
FT                 KSKPYTAFCTPWNLYQYKCMPFGISVGGCVLSRLLDQVLHDLKFKNLVHYL
FT                 DDLVLYAETFEELMVLLEEVLERLKRAGLTINPVKLQIAVEKIIYLGHEIS
FT                 YRSIRIDPNRTKPIREFPPPTSTKGIARFIGMVGFYSKFIPQFAHWAAPLN
FT                 MLRRKNVPFVWTEEHQKAFEHLKDAICNPPILCIPDFKSEFILQSDASNKA
FT                 VGAVLLQERDGVRMPVSFYSKRLTEAEAKFSTYELECLAAILSMEHFRAFL
FT                 EHSSFQLETDNMALSWLLSHPRQQGRLARWVLRVSSFRFQVRHIRGTQNII
FT                 ADSLSRMFEEKLTREEPESAPKKILENIIVPEPMCNVVSPELAHFPLAFQS
FT                 FQQHQDEDPELKALIIRLQQGELVSGYGLEKGVLCFTPPRSKQSKVVVPSQ
FT                 LKNMIFKFYHESLLGGHLGFRKTLLKIQSSFTYKGMAKEIKELVGACETCA
FT                 MSKPAQRQQVGHLSSDVASAPMEKVFIDFVGPLVRTARGNRFIFTMVDAFT
FT                 KFVWLSATPSSTAEVVIKELHKKFVWFGSPKIIVSDNAKVFWSRKLRKWLF
FT                 NRGIQHVTTTPYYPNPNHSERVNRNLRSALIAYHADSQTKWDSSLDWLTQA
FT                 FNSATHEAHNSTPHELMFSYKPSSPLALQWRISDLLPNNPTVLDIKENWNR
FT                 ARRNLQLSHERSKKRFDQNRRDHDFRTGDLVFVRTHYLSNKINKQMKKLMP
FT                 RYDGPYCIMRFVSPVSVLLSDPDNGKIIQRAHVTQLKKFKKADSGN"
XX
SQ   Sequence 8927 BP; 2408 A; 1918 C; 1931 G; 2586 T; 84 other;
     aaattggtag ccggagcgtg gttaatcttt taaatctcag tttgaagggt taaccacccc        60
     gatccgcggt tttggttctt ttcgcgaagt tttaagtgaa agtgattttt tgatttttgg       120
     ttatgtgcac gtgctcgggt ttgaccgctc gaagaggagt taacgcgtag gcctaaaaac       180
     ctacgcgggc tcaccgcccg gtggcaccgg tgcattcggt ggcagcggag tgtcgactcg       240
     gtggttggtg gtawcgttga gcgtaaaata cgccttattg ttgttttttt cctttaacct       300
     ctcttgcttt gtttackttk gcttgtctct tgtwtttttw tcctttttga ttcgacttgt       360
     gatttaattt tcgaaatwaa mwaagtaaat aaawaaaata aagtaaataa ataaataaat       420
     aaatgaatca gataatgaga ttagtaagat aaagtaaatt aaatagttaa aattaaatga       480
     aagatattag caaaatttct ttgacaaaaa aaatatattt ctatccttgc agttgtttac       540
     aaattggttt aatacccttg ttaattgaat tatcgtttgt atttttttca tgttgcttga       600
     tgtgagctgg tgcggtcgtc gtattcgtaa atcacaaatg ttagttgact gatcaggttg       660
     ctgtatcaac gagtcggagt tgtatggtcg tgagttatat acttatttac tgtcttttct       720
     cttaattttt gattgccgat gcttctctct gttgactccc ccaggtgggc atgacaattt       780
     ctcgcgtgtg tgttctgggg gacagtaacg ccgttcgtct tttaagttcc cctgtgttcc       840
     gcgttgcttt tagggattac caggttacct ctttagctcg atccggggca tcagtggcgg       900
     atgggctcaa ctttttaaaa tattttgtcg aaaattccag ctacattaga agtgaaactg       960
     tgttaattat ccttctcgga actaatgata ttaagcgggg ctcagccgtc acttttcccc      1020
     gtactgagtt cctaaaagta acgcggatcg cacggaaact attttcccaa gttttaatct      1080
     gtaagcttcc tccgatccct aaccgtgagt tttcaggaag aggtgacgta acgctggtta      1140
     atcgttggat tgacagtttt cgcacggtta ttaatattca cattttggat ctctacagtt      1200
     tatgttcttc ctcttccttt ttcgaacggc gttacagggg tagtggacgt gtggatctct      1260
     tgcatttgaa taggcgcgga cattgcaggt tgaccgatct cctcctcgac gctgtgcgca      1320
     acttgtaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaatat tattaaaaca tcatgtctca      1380
     accggttaat ccgtacttgt tattaaagga ccaggtctcc tatgagttaa aagtgcgtaa      1440
     cgtcaattac cctgaggaca ccaacgccaa cgacctccgt aaattattaa ccgacgccaa      1500
     caataggggc ctggttcctc tacgagacca agtattgcag ctcagcgtcg aggatgagat      1560
     cgcagcttgt gatgcttgtt ttgccctagt caacgcaaag atcgccgatt acaaggctga      1620
     tagtggagcg ggtggcactc tacaaatttt aatgagattc cgtcatcttc agaatcggtt      1680
     ggctaatttg atatcctttg aacatccgga cgccaccgca accaatattc agcaaaaatt      1740
     ggacgccatc ttgactatac gttccaactt tgagaaatac ttatcagaaa accccgatga      1800
     atctttggta gatgcccctc cactaccagt cttgccgtcg gttgtcgcgt cctctactcc      1860
     aacccgacca ccaacggttg aaaatcacgg gggtccccca ggacccacac accagcaatc      1920
     cctaatcgag cttgcagaac cgttgggggc tcaaccgggc accatcccac attcatctcc      1980
     gttagctcct caacctgcat cctcgcaagg gcaaaatctt gtaagttggc ctattcataa      2040
     tgcggtgaca ggggccctgt tgccgggaca gcctccctac ggtggaggct ttgccaatta      2100
     tccaatgggt cccatttcac cgggggacca attaaattca cctccgttgg ggtacgtccc      2160
     acctttggct ccggcttata atccgtcgtg gggtgttgtc ccgccaacag agtttcctgc      2220
     ccagccgctg gccatggcca acagattcca acaacaacat gtgtcccctg cacaggatgg      2280
     agtctatgaa aaatatgcca agaaggcagt tctggagttg gccctcaaag atctaaaacc      2340
     gttagacgga atgaatcccc acttcctcta taaatttgtg cgcaaaattt tggagcttca      2400
     tcgtcggcca ggtctgtcgg atctggcttt attcaatttg attcttcctt ttacctatgg      2460
     tcctttgaaa ggagttttgt tgaccgcatt gcatgaaaat ttgtcctttg atgcattcca      2520
     tgagcgcgcg ttgaagactc tcatcccatc tcaaatgaga gaaagattaa aatggtcata      2580
     ttataacagg taccaacgag atgatgagtc ttttacttcg ttcattgcag acatcaaggc      2640
     ggccaacaaa attctaaggt tgggctgtag tgaaagagat gtcatttcta ccattattac      2700
     taactgcgct ccggaggagc gagcaaggtt cgtgttcgaa gctcgaccta atacttacca      2760
     agaactttat tctctatccg aaagagttaa tgatatcaga tttgcagaaa acgaacgacg      2820
     atctgtcctt gctcgctcat ccgcagtgca gggacaacat aggactcaag aaatgggcag      2880
     atccgccaga ccttatccgt cggtaaaatt agtggctccg gatttgcaag aagcaagtac      2940
     atcctccgaa ccagctgctg tcttggccgc cggcatagac caaatgcatt tgcgtggtgc      3000
     cccggcaaac tctccagatc gtagactttg ttttcgctgt ggttcaccaa accatatagt      3060
     caggttttgc ccaaagccta acccgaaccc gcctcaaggg tcaaaaaacg ccgagagccg      3120
     gtagtgcgtc atgagacacc ccctacaacg gcagttttca tttcaagtct cgctgctctg      3180
     caaaaagaga aggtttgggc gataccctcc atagctctcc catgcttggc ggttgatttc      3240
     tgttctctcc tcgtatctgc tcttcttgac agttgtgcgt cacgaaactt aatttccgcc      3300
     aacatgtttg caaaattacc taatagaatc ataggagagg tgaacgagga gagaatccga      3360
     atttcaacag ctaaggaaga ccaacatctc acttcgcagt gcgatgctgt cattaaaatc      3420
     aaagtgggag gtttctcatg gcgtactcgg ttcttagtgg tgccgggtct ccacgcggaa      3480
     gcaatattgg gactcgagtt cattctcaag actggtctca attttgatct ttccgaaaaa      3540
     tgggcaaatt tcaagtttaa gcctgaagta aagattccaa ttgttcaagc ctttcctaca      3600
     aagcaaattg ttaaaccaaa ttttgaagaa tattctcttc aagctgagac cggtgttgac      3660
     gatggacccg atttgtccca cctttctgcg gagcgagcgg atagggtgag gaacattctg      3720
     gccaagttcc cgcaagtctt aactaagaaa ttaggaagga caaatttaat aaattacgat      3780
     attgaactat ctgatctgaa accagtgcgt tccccgccct acccccttgc tcctcccaaa      3840
     atggaaatat gccgggggct ggtacagcag ttattagatg atgacgtggt tgagccctca      3900
     atatccaatt atgcctctcc atgtttcgct gtcccaaaac caaacaataa acatagattg      3960
     gtggttgatt accggaaatt aaatcaaaaa gtgcaatttg agtctatccc ggttccagat      4020
     ctcaagaccg ccttctcttt cttcggcaaa gcccgttatt tcgtggtcat agacctcaac      4080
     caggcgtacc atcagattcc cctcagccaa aagtcaaaac catataccgc attttgtact      4140
     ccgtggaatc tttatcagta taaatgtatg ccatttggta taagcgtggg tggttgtgtc      4200
     ctctcacgtc tgttagacca agtcctccac gaccttaagt ttaagaattt agtacactat      4260
     ttagatgatc tcgttttata tgcggagacc tttgaggaac tgatggtgct cctggaggag      4320
     gtcctagaga ggttgaagag ggcgggcttg acgatcaatc cggtcaaatt gcaaatcgca      4380
     gtggaaaaaa taatttatct gggacatgaa atttcgtatc gttcaattag aatagacccc      4440
     aaccggacca aaccgataag agaatttcca cctcctacct ctactaaagg cattgctagg      4500
     tttataggaa tggttggatt ctattctaaa tttatcccgc aattcgccca ttgggcagct      4560
     cctttaaata tgttgcgcag gaaaaatgtt ccatttgtct ggacagagga acatcaaaaa      4620
     gcttttgaac acttaaaaga tgcgatttgt aatccaccaa tcctatgtat tccagacttc      4680
     aaatccgaat tcatcttaca gtctgacgcc agcaataagg cagtgggagc cgttctccta      4740
     caagagcgag acggagtaag aatgccagta tctttctatt ctaaaagact cactgaggca      4800
     gaggctaaat tcagcactta tgaattagaa tgtttagctg ctatcctgtc catggagcat      4860
     ttcagagcgt ttctcgagca cagttcgttc cagcttgaga ctgacaatat ggcgctaagt      4920
     tggctcttat cgcatccgag gcagcaaggt cggctagccc gctgggtact tcgtgtgtct      4980
     agttttcgtt ttcaagtgcg ccacattcgt ggcacccaaa acattatagc cgattcgttg      5040
     tctcggatgt tcgaggagaa gcttacaagg gaggaacctg agtcagctcc gaagaagatt      5100
     ctggagaaca taatagttcc tgagcctatg tgcaatgtag tctctccgga gctggctcat      5160
     tttccactag cgttccaaag ctttcaacag catcaagatg aagatcctga gttgaaggcc      5220
     ttgataatca gattacagca gggcgaactg gtctcgggat acggcctgga aaaaggcgtt      5280
     ttgtgcttta ctccgccccg ctccaagcag tcaaaggttg tggtcccctc tcagttaaag      5340
     aacatgatct ttaaatttta tcatgaatcc ctcctcggag gacatttagg attccgcaag      5400
     accttgctaa aaatccaaag ttctttcacg tacaaaggca tggcaaagga gataaaggaa      5460
     ttagttggtg cgtgtgagac ctgtgccatg agtaagccgg cccagagaca acaggtggga      5520
     cacttgtcca gtgacgtggc ctcggcccct atggaaaagg ttttcatcga ttttgttggc      5580
     cctctggtcc ggactgctcg gggcaacagg ttcattttca ccatggtgga tgcctttacc      5640
     aagtttgtct ggctttctgc aaccccttct tctacggcag aagttgtgat taaagaactc      5700
     cataaaaaat ttgtctggtt tggatctcca aaaatcatcg taagcgacaa cgccaaagtc      5760
     ttctggtccc gtaaattgag aaagtggttg tttaatcggg gaatccaaca tgttacaact      5820
     accccttatt acccaaatcc caaccactct gaaagggtca accgcaacct aaggtcggct      5880
     ctcattgcct accacgctga ctcgcagaca aaatgggact cgagcctgga ttggcttact      5940
     caagcgttca attctgccac gcatgaagcc cataattcaa cacctcatga gttgatgttc      6000
     tcgtataagc ctagttcacc tttggccttg caatggcgaa tcagtgacct gctccctaac      6060
     aacccaacag ttttagacat taaagaaaac tggaatcgtg ctcgtcgaaa tctccagctg      6120
     agtcacgagc gttcgaagaa acgtttcgat caaaaccgtc gagatcatga tttcaggact      6180
     ggggatttgg tgttcgtccg aacgcattat ctttcgaata aaataaataa gcaaatgaaa      6240
     aagctcatgc ctcgttacga tggcccatac tgtataatgc gttttgtgtc tccagtgtca      6300
     gtcctgttgt ctgatcccga caacggtaag ataattcagc gagcgcacgt gacccaattg      6360
     aagaagttca agaaagccga ttcaggaaac tgatttgcca tcgctcaaga ggggggttca      6420
     ccagggcgaa gcagtcggta gggtcgatca ttaattgaaa atgaaataac ttttgcttaa      6480
     aattgtgtag atagatggtc gctcgagctg ttccaggatt gccctcgcgg aattgcctac      6540
     actcgattcg tgaaaggaag tgaggggatg cccgaggggg atccttggac agttcgggaa      6600
     ataccaagtt ctaggttgtc cgcatcagct cacaacaaga gatttcaagt aaaaccaacc      6660
     gagtcatcgc tccaccgaat gcacaagtaa gtaagtaagg tatcgaaact tttgttaagt      6720
     attggggagg gggaggttga gcacggtggc aaaattttgg tttactattc cttggtttat      6780
     aatttgatgt ttttattgtt tcccttttga atattgtttc tctctctttt ttttttactg      6840
     ttaagatttt cccgaatcgg acaaaaaaaa aaaaactgtc aaaatatttt caaaagtcct      6900
     gtctcttata atttcggttt cccgaattat tatttctttt cctctaacgt taacttccag      6960
     gcaataactt ccaggacaaa atcttattcg accgtaggtt taagacttga ctgtgatatt      7020
     aggtttaggt tagttttaag tacaaccatt aattgttgac ttaacatatt tgttaaaata      7080
     tgtttaaacg acgatcgtcc cgtcgtcgtt tcccctcgcc tagtccggga cgggacaggc      7140
     tgggggcact accgacctcc gactcttttt attcgcgggg tgtgctgggc ggattgaggg      7200
     ggggagggag atcgaataac tagcttttgg tgaaagactc ctcttcctta ctcaattcgc      7260
     tgagcccccc gctgacccct tkttctagtc accctttcgt tccatttcag tttgtttttg      7320
     cctcctagct ctgcttcctc cctcccccca ccatctgtag tttgccgtct tttctgtgta      7380
     agtaatttga gtaaagtatt ataaatattt tatgagtgtg tgtgatcgat cactatagta      7440
     atttttcagt tgattaaaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaac aaaaaaaaaa      7500
     aaaaaaaaaa acaaaacaaa aaaatgtagt gtttgtaaaa ttaaaagata aagttagtga      7560
     agttgaagta aagtaaatat gtamaaaaaa aataaaaaaa taaatgaaaa tgaaagtaaa      7620
     tatttagtat gtgtgagtta tagtaacgtc gagtcagtgc gaaaaaccaa gggtccagga      7680
     agtgaccctt ggccaaacaa gattcgtctc tattttgttc gtaaaaaaaa aaaaaaaaaa      7740
     aaaaaaaaaa aaggaaaaaa aaaaatgttt ttttttcagg tgttgcaaaa aaccgagcct      7800
     tggtgaaaag gtttcggcca cgcccaccat attttgtttt gcgtgagaag tattcttttt      7860
     ccattgtgct taaattaaaa tttcttcgtt gcagaatttt gttgtaaata aattatgcgt      7920
     ttcgtttcga tttctaggtg ccaccggggt ttttagggga ggtttgtagg tattgatctt      7980
     ttttttttaa atttgtataa agggaaattt gtataagtga aaaagaaaaa ttgtttaatc      8040
     gtcstttgtg atttttgtca ggtttgcaat gttctgtttt tttttttgtw tctgatgtca      8100
     ttgtkatttt cttwagaaga gagaagtagg ggaaaggaaa aawwtsttta gawtsaagta      8160
     gwagmggatm awsttagtaa gtgtawttcc aawttgcgcc cgttcmaatt gcagtatttc      8220
     tcccgkktag ttwwwatcct ttgatctcww ttawcattaa cttttcaaat taggtaaagt      8280
     aggtgccgtc agtttgtttw atataaaaat kcaaatggtc ggtaaggttc gacaattcga      8340
     agcaagtgat agsgtggtgt gttcggsktg gtgggtcgcc tccggaatma cttccccggg      8400
     tcwttgckgg ggcggcgcac cccsccggac tcaccgctct ctstctccwg wctcccawct      8460
     caggcggtks acgacaaccc caagctggwm acatcctttt ttwwaagact ccakkcgcag      8520
     tcccgagkag gtgttgcctt cgcttgcttm aggcccatgt tcttcccaat cattccccca      8580
     attttatccc atttwtgtaa ktcggwcatc wmctaacgca gtctccagac tttctttkgt      8640
     ccgtwgwgaa aaaaattcgg aatcttatgt cwwgttcgwt agwtaggccc gtctggaaat      8700
     ctgtmggcmt cwtkggggmg ggatagaaag tggtcgcaag tgcaacwccg ggggttcacc      8760
     ttctccgtsg aaactgattt ggggttgcct tsgccgcctg kgttgggagt caaggaaaaa      8820
     tttttgawat tcagcagtta atgttcgact tcttttccaa ccascwtttt ctttmgcagt      8880
     ctaccgctgt cttctgagga ctatcgtccc ctttaagagg gggagta                    8927
//
ID   Gypsy-13_TrVa-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-13_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-376
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 317-317 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 376 BP; 61 A; 95 C; 78 G; 142 T; 0 other;
     tgttccggtt aaccgtctcg attccggtcc gctccgccag gggaggaccg gaatggagat        60
     gggaaccagt gggctcggtg gaccggccga agattcgcca tcttcagtga gtttctagct       120
     gcctcttcga ccggtcaccc gagcccgtgc aattcttgat ttttcctact ctgatccaaa       180
     atgtgttaat ccctttttct taaatcttca tttctttagt ttgttaactt ctctcttcgg       240
     ttcgtttggt tcgttttgat tctgtttatt tctctttaat aaattatcgc ctttcgttcc       300
     gttaatccgt tgttctgttc gtttcgtttg cttcccacct gttagtttat cgttacgacc       360
     acttcggtct gtaaca                                                       376
//
ID   Gypsy-140B_AA-I repbase;    DNA;    INV; 7322 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.01, Created)
DT   01-MAY-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-140B_;
KW   Gypsy-140B_AA-I; Gypsy-140B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7322
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7322
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 175-175 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 7322 BP; 2407 A; 1233 C; 1502 G; 2179 T; 1 other;
     ttggcgccca ackaaaaaat ttaaacgttg catttctttc aaaagctatt taaattgaaa        60
     aaagtgaatt ttaaaattga attttagttt attctctcag aaattttgaa attgaatttt       120
     attattttac atttttttta gctataagtt tgaagtgaat tttgtttgta gtttctaagg       180
     tctcgaattt aattcttaaa ctgaactgaa cttgaatttt attttgaact gaattttgat       240
     cgccaacctt atttttactt tgaataaaat ttttgtttat agttttaagg atctgaattg       300
     aaatttctgt tgaattactt tctagttttt aagttttcga attgaattga actttttaat       360
     agtccttaag tttttaattt gaatttttcc ttctataatt gaattaatct gaattgaatt       420
     taaactgaac tgaactactt ttctagccta ggtatttttg attctttttt ctacattagt       480
     tctaattttt tccctaagat tttttttttg gatttcctct tttgaatcat cgaattgagt       540
     atttctcatt aaaaattaga agatttcgct aattttgaac tgagttttga gagttaaaaa       600
     tggctggtcc atacattcga ccgacagttg atcatttgtt ggaggaggaa gtcgattttg       660
     agttacgtct ccgcaaacaa acggttgata gaagagagaa tttggaggac aagaagagat       720
     tgttgagaag gttattcaag gaagatagga agtataatgt cgttcatgaa agcgtaatca       780
     agtattcgga ggagattaaa acgatcgcga aagtggtaga agagatagta gggcaattac       840
     gaaagaagtt tgatagagct ttagtatcga gattgaggca ctttttaatt cgggtttcta       900
     tttcttatgt ggaaaatgag gaggaagcaa tcgcaaggaa agaagcatgt gagcagattg       960
     agaagattct catagaatta ggtcagcacg ttcgagaaga aattggtaag gaggatacag      1020
     atacaggtag gaaaggttct ggtagtgatt catggagaaa tccagatcct aattcagctg      1080
     tgaattctaa gaaaggagaa gaggaagatt tcaagagcaa ggaacagtta ggtgaggata      1140
     aggatctaga tttgaaatat cgtttaatcg atcctggtgc ccttttaaag acaccacgga      1200
     ggtcgattcg aagctctttc gagtccctcc attttgataa acttgagtta aagtgttcag      1260
     aaattaattg taaatgcggt gagtgtgatg ggaaaggagc gcagaagaaa gtttcaatga      1320
     attctagggg atatcatgga gatttagata agaataaaga agctgaatca ggagaaaatg      1380
     atagtacgaa aggaagattt gtttttagga aagaagtttt tgggaattat tcaacaaaac      1440
     gagaagcgaa cttagataac gggaggaaaa gcgagatagg agatgagagc ggttatgaga      1500
     aggagcgtaa aaattaccgt tttagagata ctcagtacac aaatcataga gttaatcgat      1560
     cacagcgtga taggacgctg agcccggtga taaactttag agaaacacga tcaaatagaa      1620
     gaggaatgga agatagggaa ggtaatagag aaataggaat ttcgtctagg cgtagacaat      1680
     actacagtga gtcggaaagt gattctgaga gggatcatag aggaaggttt attaagcgga      1740
     gtagtagtag aagcaggaga cacagacgtt attcttcagt gtcaagtagc tcttcagtag      1800
     gcgctactgc tcgctacaga aaatccagag tagagaattg gaatttagta ttttccggag      1860
     ataatagatc gatgcaagtt gaagattttc tttacaaaat caagaaactt gcaaagcatg      1920
     aaggagtttc cgagaaggaa ctattgcaaa acattcacca tcgtttaaag ggagaagcct      1980
     acgattggtg gtttacccga gaggacagat ttaataaatg gagcaagttt gaggacgaaa      2040
     tacgtttccg atacggaaat ccaaatcgcg atagaggtat caaggcccaa atacgcgaat      2100
     tgaagcaacg taaaggagag acgtttatcg catacgtcac ggaagttgaa aaattgaatc      2160
     aatgccttca acgacctttt tcctcgagta ctttatttga attggtatgg gagaatatgc      2220
     gacctcacta cagatcaaaa ttgtcaatta tggacattga agacctagaa catttgatca      2280
     agatcaatca taagattgac gcaagtgatc ccaactttta tagatatccg aatagtcatc      2340
     gtagtgaagt tcttcactta gaggcaaatg aagattcttt gagcgactat tcggaagacg      2400
     aggctcttgt acaaactgta caaaaagcac aaagaaactt tcaaaaacca atcgcaaata      2460
     atcgcgaaca gcgtcagtct ttcacagagc gaaaagaagg acagcagaga tctccactaa      2520
     cctgctggaa ctgtcagaaa gctggccacg cttggagaga ctgtagagat cagaaagttc      2580
     tgttctgtta cgcttgtggg aaattgggaa gaaccacaag gaattgcgaa aataatcacc      2640
     caatttctag agatctgatc aaagacaata cgcgaccaaa aaactaattt cgagatgctt      2700
     gtcagggaat ccgaacatct cgccttttac ttcgattccc aaccaacaaa atgatcaaaa      2760
     attaggtaat ttctcacttt ttgaaattcg agtagaccca acttcatgtc ctcacattag      2820
     agtcaacgtt ttaggtacag acatgacagc tcttctggat tcgggagctg caatgagcgt      2880
     catgagttct gtcaatatga ttgaagctca tggattgaaa attctgaaat ctaaaatcaa      2940
     agtttgtacc gctgacgaca caaaacattc atgtttgggt tacgtgaata tcccgtatac      3000
     ccttgggaat gacaccaaag tgattccgac attaatagtc ccggagatcc ggaaaccgtt      3060
     aatcttagga atggatttct ggcgtgcatt caagatccga ccgatgatta tgtcagagga      3120
     caaaatccag gatctcgaac tcacttggac gtcatcggca actgaaaatg agttaaatct      3180
     tctaagattt gaaccagaat cttccgctga agacgagaaa ttaatagaat tctcagttca      3240
     attagttttg cctctagaac ctgaaatttc cttcaaatca aagccagaag aggacgaatc      3300
     tttagacgtc cctactttag atttgccaga agacccgctc aaatcgattg ggacggtaga      3360
     aactgagcat aatctcaata aagaagaaag actacaactt caagaaattt tgaaacattt      3420
     tccattgact ggcgcaggaa atttgggcag aacaactctt ctcgaacatg aaatcgagtt      3480
     agtttcggag gaaagatgag agatcttcct atgtatgata ttctccaaaa atttgggaga      3540
     agatcgaaga ggagctggag cgatggaaga gtttaaacgt catcgaagaa tgttcttcag      3600
     agtttgcaag tcctctcgtt cctgtgaaaa aggcgaacgg aaagattcga gtttgtctcg      3660
     attcgagacg aataaactcc gttaccaaaa aagacgccta tccgatgcga aacatgagtg      3720
     atatatttta tcggctacag aaagctaaat atttcagcat cgtagatctt aaggatgctt      3780
     atttccaaat tcctttaaaa gaatcttcgc ggaatttcac agcatttcgg actccaaaag      3840
     gactctttcg ctttaaagtt gttcctttcg gtctgaagaa cgctccgttt actatgaaca      3900
     ggttgatgaa catggcaatt ggtttcgatt tggagccttt tgtgttcgtc tacttggacg      3960
     atataattat tgccacggaa acgattgagg aacattttcg tttactgaag gaggtagctc      4020
     tcagacttaa aagggcaggg ttgactatct ctgtcgagaa aagtcgtttt tgccgcaaac      4080
     aggtgaaata tttgggatat attttgacgg aaaatggttt gtcaatcgac agcgcaaaat      4140
     tagagccaat tttgaattat ccgaggccaa aatcgattcg ggacatcagg agactgatgg      4200
     gcctcatggg tttctatcag aaattcatac ccagatatag tcacttaaca gcgcctataa      4260
     cggatttatt gaaaaaatcc aagaaattca agtggactga cgaagctgaa cttgcgctag      4320
     atgaattaaa gtcagtttta acgtcggcgc cagtattggc gaacccagac tacacgaaat      4380
     cttttattat agagactgac gcctcacagt tagctgttgg agctgcatta ttacagcaat      4440
     ttaacgatgg aaagcgtata attggatatt tcagcaagaa attatccagc actcaaagaa      4500
     agtatgctgc cacagaaaaa gagtgtctgg cagtactttt ggcaattgaa aatttccgcc      4560
     attatattga aggaaccacc tttactgttg taacagattg taagagtata acatggctct      4620
     tttcaattac ggccgcaaat gccaattcga ggcttcttcg atgggcactt aagttgcaat      4680
     cgtacgattt caccttacaa tatcgcaagg gaaaggataa tgtactagca gactgcctat      4740
     cacgaataga cagtattcaa gttattgacg acgaacatca aaaactaatt gataatatca      4800
     agaaacaacc tcaagactac aaaaacttta aggtgataga tgataaaatt tacaaattag      4860
     tcgacgattt ttcaaaattc tcagacaaac gcttcgagtg gagatattac cccactttag      4920
     cagaaaggga accattgatt gagtctatcc acaatattgc tcatcttggc tatgaaaaga      4980
     ctctcaatgc gcttaaacag aagtatttct ggccaaaaat ggcttcggat gttaagaagt      5040
     actgtaaaca atgtctagcg tgcaaaactt cgaaagggat taacgtgaat ccaactccgc      5100
     ctatgggctc acaaaagaaa tcttgcgact atccatggca atttctcacg cttgactacg      5160
     ttggcccttt tcctccctca ggcaaaggaa ggagtacttg tctattagta gtcacagatg      5220
     tgtttacgaa gtttattatg gttcaaccat tcaaacaagc cactgcatca tcgcttgttc      5280
     aatttttgga acaggctata ttccttttat ttggtgtacc agaaataatt ttaacggata      5340
     atggttccca gtttacatcg aaggaatttg ccacattact caaacggcat ggggtgaaac      5400
     actggttaac accttcgtac caccctcagg taaataatac tgagagagta aacaaagtag      5460
     ttacaacagc cataagagct acactgaagg gaaaccacaa acaatggact gagaacttac      5520
     aggaaattgc atgtgcaata cgcaattcag tccacgattc cacaaaattc acaccatact      5580
     ttcttacgtt tggtcgtaac atgatttcca atggaaaaga gtacgaaaat ataagaaatg      5640
     gaagtacatc acctaatact accttaagtg aggaagaaag agaggaattg tataaaaatg      5700
     taaggaaaaa cttagcagaa gcctaccaaa aacaagcgaa atactataat ttgcgatcta      5760
     ataagaaagc tccgcaatat caggtagggg aaaaggttct aaagaaaaat acaacccaat      5820
     ccgacaaatc taaggacttc tgtgcaaaat tagcacctaa atacatcgaa gcttacgtta      5880
     aaagaacttt aggagacagt tacgaactgg tagacgagaa taacaacaat ttaggaatat      5940
     ttcacgctaa ttttttaaag aaattttaga gaaaaggagt tcaagctatg acataagagt      6000
     aaaatcgaaa tgtacaagaa taacacaaaa aacatcaggg aaatccacca aaaacgatgg      6060
     taaaaatagg tgtattcaaa gctagtgtta gtaaaataca aaaatcgcaa acctagccct      6120
     aacagttact taaaatctag attaattgct taaaattaca cattatgttt ttctcaccat      6180
     acaattgttg ttttcggttg tcgttgtcct tctgttgtca tcgtatgccc aaagctctta      6240
     gtgttctact tgtgaatatg attgttgttt ttccgctgat agttctccgt cctaaaagta      6300
     aaaacttcaa tttactaact ttgctttgtt ttgatcgcga attcattaat ttcttacctc      6360
     atttgttaat cagcctccta gagaaagttt gttttcatcc agtccatcca ttttccggct      6420
     agtttttttt cccccagtcc aaattatcct cattagtagc attcctccat atttcaattg      6480
     gtgcaatcat taattttctt gcagattttc acgagaattc caccattttg tccttaagtt      6540
     tgtcgtccaa gtccgttgtc ctagaaattt ccttccgttt gcataatttc agatttccgt      6600
     cgtttgtgtc acctgttgga gaagaaaaag aaagagaaac atttaaaacc ataatatact      6660
     tgccatataa aaacaaaata ttagaaatac tcccccggtt tatgtaaatc aaataagtct      6720
     gcaggttttt ttccactcca ttctttggtt ttttgtcgtg ccggtccgct tcactgtttt      6780
     gctttgtcca ctctgacgat ttgacgtttg tcgggatggc atagtctttt tcacatccag      6840
     agcgaccgcg cggatgacag tgacagttcg ctaagctgtc aaagtagttc atgcgatgtt      6900
     ataggtctgt tcgatattct cattttcagt tttggttaga attctatgtt tttcgtcaag      6960
     tttcaaattg atgggtagaa ttcgtattgt ggtcctgtag ggattacgtt taggcaattt      7020
     taaatgcaga ttgtgtcaaa atgagttttg atgttgcatt taattgcagt tcgttgagtg      7080
     atcaagttat tgacggtaaa gtttccgttg tttgatcatg gtttacgtta cgttcagttc      7140
     agttgagttc agctagagag attattgaat agaatttgta cgttgatgaa tgaatgacct      7200
     tagtgtatgt tactttttca gttcagttaa gtttttgtgg agttgcaacg cttaagtttt      7260
     ttgtaagtta tgaaaatttg atcaagttat tgatcaaatt ttcataaaaa tggatggggt      7320
     ga                                                                     7322
//
ID   Gypsy-140B_AA-LTR repbase;    DNA;    INV; 1824 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.01, Created)
DT   01-MAY-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-140B_;
KW   Gypsy-140B_AA-I; Gypsy-140B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1824
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1824
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 231-231 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1824 BP; 471 A; 397 C; 404 G; 540 T; 12 other;
     tgtaacgttt tacgtttttt gtagtttaaa aacattaata ataaacaaaa aaaaataaaa        60
     caaaaaaatg attttagttt ttatagcgtt gaataaaaat attttgtttg cgttcgtaaa       120
     atgcagcgat ccatgtagcg taagcgtatg tggattgcgt ttgccataac gaattatgaa       180
     agcttcgcaa agcgccatgt acacattttg gcggactaca ggcgtaattc agatttgtcg       240
     ccatacctac cmagcgccat gcaaaagcag ttggcgcgat tttctataat agttgcttwt       300
     tgtgtgaata gttggacggt tagaagaggc agtttcttgg cgcaagaatt tcttcaactc       360
     gttcatttcg ctacgaagtt ggctggagta cagaagtgcg cgaatcaagt attctaatac       420
     gctcagttaa agtgaagttt aagttgaatt ttagttcgaa gtgattttct aaattcaagg       480
     taaaagttag tgagtgagtt tgtgcaagaa gttgtgttaa acgtttggta tttctttcat       540
     cttttagagg accgaggtcc gtaaattact cgcgtttctg ttcaaaagat tttattacgt       600
     ttctacacgg aaaaaggtaa ttatatttaa ttaatagcat gaagacttaa aactaatgtg       660
     atttcgcgtt ggacatgcag cgctctgcgc tttttccgta cggctggatt tttacgtcga       720
     cattcggcat ccgtcaccgc cgaatcgtga gtttcgttca tcgataattt tggtagtccg       780
     ttcatcgttg agacccgtgt gcagtgcaaa aggcccgcct tgaaaggtag ttaaacggag       840
     gcgtgagtga agtcgctaaa gtgctctgta gcgaattttc tccttcggac kccaattacc       900
     gaaggtaaag gtcccatcac gttacacctt gtggaccmtt tcgtcgagag ktcggttcgt       960
     cgaagcgtga cgccaattac acgccgcgaa cctcgatcct aacccaaaga tagggctgca      1020
     ttactccccg ctcggattag cggacaggta cgcgaagccg ggtcgctggg tacgtgcwtc      1080
     cctattggma ggagcggatc gtcccgggta twaatcggcg caatcgccgt ccsactctcg      1140
     wkwtccgaaa tcggaagctt ccgttccagc cgccactccc tccgcaacgt tattccggcc      1200
     attttgcacg cgggtcaatt cttcgctgcc cgccaatttg cagcacggac acgccggtgg      1260
     tcgccatctc gttaccgcca tcgccgaggt cgaccgtcgc catcccatcg agtctgcgga      1320
     gtcgacattt cgtttcccgt caacgagcca tcatcgagtc aacgccaaaa tcctgcgcag      1380
     gtacgtcaag agcttatttt acatggccat gtttgctctt ttccattccg tacggttttt      1440
     gctagtccaa tccgaatgaa tggtgaatcg tttcctaaaa taaacagttt tgaagaaaga      1500
     ttagttactt tttccgttac gtttaactat gcttaaataa aactactcgc taacttacat      1560
     tacgtttcgt tccgtttatt agctcatttg agtaagcatc ctcttctgaa ttccctaaaa      1620
     ctttaaggct gtggaggagt aaaagtcatt cttgcgttgg attttctagt gttgtttacc      1680
     aagaaccgtt caaaactctc ccagagagaa aaagtctcta aacgtcgggc aaatctgaac      1740
     acgactggtg gtctctcatt gagagtggcg cttaagccac cgagtttgct aataatctct      1800
     agtaaagttt tacgaacggt taca                                             1824
//
ID   Gypsy-140_AA-I repbase;    DNA;    INV; 7315 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   02-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-140_AA_;
KW   Gypsy-140_AA-LTR; Gypsy-140_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7315
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1013-1013 (2011).
XX
RN   [3]
RP   1-7315
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JAN-2019).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 97% similar to each other.
CC   [3]: Sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           623..2707
FT                 /product="Gypsy-140_AA-I_1p"
FT                 /translation="MAGPYIRPTVDHLLEEEVDFELRLRKQTVDRRENLED
FT                 KKRLLRRLFKEDRKYSVVHESVTKYXEEIKXIAKVVEEIVXQLRKKFDRAL
FT                 VSRLRHFLIRVSISXVENEEEAIARKEACEQIEKILIXLGQHVREEIGKED
FT                 TDTGRKGSGSDSWRNPDPNSAVXSKKGEEEDSKSKEQLGEDKDXDLKYRLI
FT                 DPGALLKTPRRSIRSSFESLHFDKLELKCSEINCKCGECDGKGAQKKVSMN
FT                 SRGYHGDLDKNKEAESGENDSTKGRFVFRKEVFGNYSTKREANLDNGRKSE
FT                 IGDESGYEKERKNYRFRDTQYTNXRVDRSQRDRTLSPVINFRETRSNRRGM
FT                 EDREGNRGIGISSRRRRYYSESESDSERDHRGRFIKRSSSRSRRHRRYSSV
FT                 SSSSSVGATARYRKSRVENWNLVFSGDSRSMQVEDFLYKIKKLAKHEGVSE
FT                 KELLQNIHHRLKGEAYDWWFTREDRFNKWSKFEDEIRFRYGNPNRDRGIKA
FT                 QIRELKQRKGETFIAYVTEVEKLNQCLQRPFSSSTLFELVWENMRPHYRSK
FT                 LSIMDIEDLEHLIKINHKIDASDPNFYRYPNSHRSEVLHXEANEDSLSDYS
FT                 EDEAPVQTVQKAQRNLQKPIXNNREQRQSFTERKXGQQRSPLTCWNCQKXG
FT                 HAWRDCRXQKVLFCYACGKLGRTTRNCENNHPISRDLIKDNTRPKN"
FT   CDS           2674..5991
FT                 /product="Gypsy-140_AA-I_2p"
FT                 /translation="RSDQRQYATKKLISRCLSGNPNISPFTSIPNQQNDXK
FT                 LGNFSLFEIRVDPTSCPHIRVNVLGTDMTALLDSGAAMSVMSSVNMIEAHG
FT                 LKILKSKIKVCTADDTKHSCLGYVNIPYTLGNDTKVIPTLIVPEIRKPLIL
FT                 GMDFWRAFKIRPMIMSEDKIQDLELTWTSSATENELNLLRFEPESSAEDEK
FT                 LIEFSVQLVLPLEPEISFKSKPEEDESLDVPTLDLPEDPLKSIETVETEHN
FT                 LNKEERLQLQEILKHFPLTGAGNLGRTTLLEHEIELVSXGKMRDLPMYRYS
FT                 PKIWEKIEEELERWKSLNVIEECSSEFASPLVPVKKANGKIRVCLDSRRIN
FT                 SVTKKDAYPMRNMSDIFYRLQKAKYFSIVDLKDAYFQIPLKESSRNFTAFR
FT                 TPKGLFRFKVVPFGLKNAPFTMNRLMNMAIGFDLEPFVFVYLDDIIIATET
FT                 IEEHFRLLKEVALRLKRAGLTISVEKSRFCRKQVKYLGYILTENGLSIDSA
FT                 KLEPILNYPRPKSIRDIRRLMGLMGFYQKFIPRYSHLTAPITDLLKKSKKF
FT                 KWTDEAELALDELKSVLTSAPVLANPDYTKSFIIETDASQLAVGAALLQQF
FT                 NDGKRIIGYFSKKLSSTQRKYAATEKECLAVLLAIENFRHYIEGTTFTVVT
FT                 DCKSITWLFSITAANANSRLLRWALKLQSYDFTLQYRKGKDNVLADCLSRI
FT                 DSIQVIDDEHQKLIDNIKKQPQDYKNFKVIDDKIYKLVDDSSKFSDKRFEW
FT                 RYYPTLAEREPLIESIHNIAHLGYEKTLNALKQKYFWPKMAXDVKKXCKQC
FT                 LACKTSKGINVNPTPPMGSQKKSCDYPWQFLTLDYVGPFPPSGKGRSTCLL
FT                 VVTDVFTKFIMVQPFKQATASSLVQFLEQAIFLLFGVPEIILTDNGSQFTS
FT                 KEFATLLKRHGVKHWLTPSYHPQVNNTERVNKVVTTAIRATLKGNHKQWTE
FT                 NLQEIACAIRNSVHDSTKFTPYFLTFGRNMISNGKEYENIRNGSASPNTTL
FT                 SEEEREELYKNVRKNLAEAYQKQAKYYNLRSNKKAPQYQVGEKVLKKNTTQ
FT                 SDKSKDFCAKLAPKYIEAYVKRTLGDSYELVDENNNNLGIFHANFLKKF"
XX
SQ   Sequence 7315 BP; 2333 A; 1265 C; 1518 G; 2110 T; 89 other;
     ttggcgccca actaaaaaga tttaaacgtt gcatttcttt caaaagctat ttwaattkag        60
     aaaaagtkaa ttttgmagtt gaattttakt ttattctstm agaaattttg aaattggwtt       120
     ttattatttt acattgattt ttctagctat aagtttgagg tgaatkttgt ttgtagtttc       180
     taaggtctcg aatttaattc ttaaactgaa ctgaacttga atttkatttt gaactgaatt       240
     ttgatcgcca accttakttt tactttkwat wgaatttttg tttatagttt taaggatctg       300
     aattgaaatt tctkttgaat tgctttctag tttttaagtt ttcgaattga attgwwcttt       360
     ttaatagtcc ktaagtwctt aatttgaatt tttccttcca taattgaatt aatctgaatt       420
     gaatttaaac tgaactgaac tacttttcta gcctagcsta tttttgattc ttttttctac       480
     attagttgat cctawttttt tctgagtatc ctamgawwtt tkttttggat ttccttcttt       540
     tttgttcaat catcgaattg agtatttctc attgaaaatw agaagatttc gctgattttg       600
     awctgagktt tkggagttga aaatggctgg tccatacatt cgaccgacag ttgatcattt       660
     gttggaggag gaagtcgatt ttgagttacg tctccgmaaa caaacggttg atagaagaga       720
     gaatttggag gacaagaaga gattgttgag aaggttattc aaggaggata ggaagtatag       780
     tgtcgtccac gaaagcgtga ccaagtatkc ggaggagatt aagamkatcg cgaaagtkgt       840
     agaagagata gtagsgcaac tacgaaagaa gtttgataga gctttagtat cgagactgag       900
     gcacttttta attcgggttt ccatwtcktw tgtkgaaaat gaggaggaag caatcgcaag       960
     gaaagaagcw tgtgagcaga ttgagaagat tctcatagaw ttaggtcagc acgttcgaga      1020
     agaaatcggw aaggaggata cagatacagg taggaagggt tctggtagtg attcatggag      1080
     aaatccagat cctaactcag ctgtgaaktc taagaaagga gaagaggaag attccaagag      1140
     caaggaacag ttaggtgagg ataaggatmt agatttgaaa tatcgtttaa tcgatcctgg      1200
     tgcccttcta aagacaccac ggaggtcgat tcgaagctct ttcgagtccc tccattttga      1260
     caaacttgag ttgaagtgtt cagaaattaa ttgtaaatgc ggtgagtgtg atgggaaagg      1320
     agcgcagaag aaagtttcaa tgaattctag gggatatcat ggagatttag ataagaataa      1380
     agaagctgaa tcaggagaaa atgatagtac gaaaggaaga tttgttttta ggaaagaagt      1440
     ttttgggaat tactcaacaa aacgagaagc gaacttagat aacgggagga aaagcgagat      1500
     aggagatgag agcggttatg agaaggagcg taaaaattac cgktttagag atactcagta      1560
     cacaaatmat agagttgatm gatcacagcg tgataggacg ctgagcccgg tgataaactt      1620
     tagagaaaca cgatcaaata gaagaggaat ggaagatagg gaaggtaata gaggaatagg      1680
     aatttcgtct aggcgtagac gatactacag tgagtcggaa agtgattctg agagggatca      1740
     tagaggaagg tttattaagc ggagtagtag tagaagcagg agacacagac gttattcctc      1800
     agtgtcmagt agctcttcag taggcgctac tgctcgctac agaaagtcca gagtagagaa      1860
     ttggaattta gtattttccg gagacagtag atcgatgcaa gttgaagatt ttctttacaa      1920
     aatcaagaaa cttgcaaagc atgaaggagt ttccgagaag gaactattgc aaaacattca      1980
     ccatcgttta aagggagaag cctacgattg gtggtttacc cgagaggaca gatttaataa      2040
     atggagcaag tttgaggacg aaatacgttt ccgatacgga aatccaaatc gcgatagagg      2100
     tatcaaggcc caaatacgcg aattgaagca acgtaaagga gagacgttta tcgcatacgt      2160
     cacggaagtt gaaaaattga atcaatgcct tcaacgacct ttttcctcga gtactttatt      2220
     tgaattggta tgggagaata tgcgacctca ctacagatca aaattgtcaa ttatggacat      2280
     tgaagaccta gaacatctga tcaagatcaa tcataagatt gacgcaagtg atcccaactt      2340
     ttatagatat ccgaatagtc atcgtagtga agttcttcac wtagaggcaa atgaagattc      2400
     tttgagcgac tattcggaag acgaggctcc tgtacaaact gtacaaaaag cacaamgaaa      2460
     ccttcagaaa ccaatcscaa ataatcgcga acagcgwcag tctttcacag agcgaaaaga      2520
     wggacagcag aggtctccac taacctgctg gaactgtcag aaakctggcc acgcttggag      2580
     agactgtaga gawcagaaag ttctgttctg ttacgcttgt gggaaattgg gaagaaccac      2640
     aaggaattgc gagaataatc acccaatttc tagagatctg atcaaagaca atacgcgacc      2700
     aaaaaactaa tttcgagatg cttgtcaggg aatccgaaca tctcgccttt tacttcgatt      2760
     cccaaccaac aaaatgatcm aaaattaggt aatttctcac tttttgaaat tcgagtagac      2820
     ccwacttcat gtcctcacat tagagtcaac gttttaggta cagacatgac agctcttctg      2880
     gattcgggag ctgcaatgag cgtcatgagt tctgtcaata tgattgaagc tcatggattg      2940
     aaaattctga aatctaaaat caaagtttgt accgctgacg acacaaaaca ttcatgtttg      3000
     ggttacgtga atatcccgta tacccttggg aatgacacca aagtgattcc gacattaata      3060
     gtcccggaga tccggaaacc gttaatctta ggaatggatt tctggcgtgc attcaagatc      3120
     cgaccgatga ttatgtcaga ggacaaaatc caggatctcg aactcacttg gacgtcatcg      3180
     gcaactgaaa atgagttaaa tcttctaaga tttgaaccag aatcttccgc tgaagacgag      3240
     aaattaatag aattctcagt tcaattagtt ttgcctctag aacctgaaat ttccttcaaa      3300
     tcaaagccag aagaggacga atctttagac gtccctactt tagatttgcc agaagacccg      3360
     ctcaaatcga ttgagacggt agaaactgag cataatctca ataaagaaga aagactacaa      3420
     cttcaagaaa ttttgaaaca ttttccattg actggcgcag gaaatttggg cagaacaact      3480
     cttctcgaac atgaaatcga gttagtttcg gamggaaaga tgagagatct tcctatgtat      3540
     mgatattctc caaaaatttg ggagaagatc gaagaggaac tggagcgatg gaagagttta      3600
     aacgtcatcg aagaatgttc ttcagagttt gcaagtcctc tcgttcctgt gaaaaaggcg      3660
     aacggaaaga ttcgagtttg tctcgattcg agacgaataa actccgttac caaaaaagac      3720
     gcctatccga tgcgaaacat gagtgatata ttttatcggc tacagaaagc taaatatttc      3780
     agcatcgtag atcttaagga tgcttatttc caaattcctt taaaagaatc ttcgcggaat      3840
     ttcacagcat ttcggactcc aaaaggactc tttcgcttta aagttgttcc tttcggtctg      3900
     aagaacgctc cgtttactat gaacaggttg atgaacatgg caattggttt cgatttggag      3960
     ccttttgtgt tcgtctactt ggacgatata attattgcca cggaaacgat tgaggaacat      4020
     tttcgtttac tgaaggaggt agctctcaga cttaaaaggg cagggttgac tatctctgtc      4080
     gagaaaagtc gtttttgccg caaacaggtg aaatatttgg gatatatttt gacggaaaat      4140
     ggtttgtcaa tcgacagcgc aaaattagag ccaattttga attatccgag gccaaaatcg      4200
     attcgggaca tcaggagact gatgggcctc atgggtttct atcagaaatt catacccaga      4260
     tatagtcact taacagcgcc tataacggat ttattgaaaa aatccaagaa attcaagtgg      4320
     actgacgaag ctgaacttgc gctagatgaa ttaaagtcag ttttaacgtc ggcgccagta      4380
     ttggcgaacc cagactacac gaaatctttt attatagaga ctgacgcctc acagttagct      4440
     gttggagctg cattattaca gcaatttaac gatggaaagc gtataattgg atatttcagc      4500
     aagaaattat ccagcactca aagaaagtat gctgccacag aaaaagagtg tctggcagta      4560
     cttttggcaa ttgaaaattt ccgccattat attgaaggaa ccacctttac tgttgtaaca      4620
     gattgtaaga gtataacatg gctcttttca attacggccg caaatgccaa ttcgaggctt      4680
     cttcgatggg cacttaagtt gcaatcgtac gatttcacct tacaatatcg caagggaaag      4740
     gataatgtac tagcagactg cctatcacga atagacagta ttcaagttat tgacgacgaa      4800
     catcaaaaac taattgataa tatcaagaaa caacctcaag actacaaaaa ctttaaggtg      4860
     atagatgata aaatttacaa attagtcgac gattcttcaa aattctcaga caaacgcttc      4920
     gagtggagat attaccccac tttagcagaa agggaaccat tgattgagtc tatccacaat      4980
     attgcwcatc ttggctatga aaagactctc aatgcgctta aacagaagta tttctggcca      5040
     aaaatggctw cggatgttaa gaagtwctgt aaacaatgtc twgcgtgcaa aacttcgaaa      5100
     gggattaacg tgaatccaac tccgcctatg ggctcacaaa agaaatcttg cgactatcca      5160
     tggcaatttc tcacgcttga ctacgttggc ccttttcctc cctcaggcaa aggaaggagt      5220
     acttgcctat tagtggtcac agatgtgttt ackaagttta twatggttca accattcaaa      5280
     caagccactg cgtcgtcgct cgttcaattt ctggaacagg ccatattcct kttgtttggw      5340
     gtgccagaaa twattttaac ggataatggt tcscagttta cgtcgaagga attcgccaca      5400
     ttactcaaac ggcatggggt gaaacactgg ctaacacctt cgtaccaccc tcaggtaaat      5460
     aatactgaga gagtaaacaa agtagttaca acagccataa gagctacact gaagggaaac      5520
     cacaaacaat ggactgagaa cttacaggaa attgcatgtg caatacgcaa ttcagtccac      5580
     gattccacma aattcacacc atactttctt acgtttggtc gtaacatgat ttccaatggg      5640
     aaggagtacg aaaatataag aaacggaagt gcatcgccta atactacctt aagtgaggaa      5700
     gaaagagagg aattgtacaa aaatgtgagg aaaaacttag cagaagccta ccaaaaacaa      5760
     gcgaaatact ataatttgcg atctaataag aaagctccgc aatatcaggt aggggaaaag      5820
     gttctaaaga aaaatacaac ccaatccgac aaatctaagg acttctgtgc aaaattagca      5880
     cctaaataca tcgaagctta cgttaaaaga actttaggag acagttacga actggtagac      5940
     gagaataaca acaatttagg aatatttcac gctaattttt taaagaaatt ttagagaaaa      6000
     ggagttcaag ctatgacatg agagtaaaat cgaaatgtac aagaataaca caaaaaacat      6060
     cagggaaatc caccataaac gatggtaaaa awaggtgtat tcaaagctag tgttagtaaa      6120
     ttacaaaaat cgcaagccta gccctaaaat tacttaaaat ctagattagt tgcttaaaat      6180
     tacacacttt tctcaccata caatccttct tgtccgttat cgttgtataa tttcctcttc      6240
     ttgtcatcgt awgtccaaag tcccwtagtg ttgtgtttgc gggaagattg ttgtctttcc      6300
     gttsatmgtt ctccgtccta aaakttaaga tttcaattta cttactttgt tattgwtgat      6360
     gaatttwgta gtttcttacc ktatttgtta atcagccttc cagtgaaagt tttttttcct      6420
     ccagtccatc catttcccag ctagtttttt ttccccagtc cawtccgtck catattcctc      6480
     cgtcwtccaa ttkktgctat catccattct ctatcgttct cgaaaaattc cwccattttg      6540
     tttccagtcg tccaaatgaa gtccattgtc cgawaagtcc cttccgttgt tctgcgtact      6600
     ccacttcagt tgtccgtcgt ttcatggtgt tacctgtaag aaaaagaaag aaaacagtta      6660
     aatctataat atacttgcca wataaataca ataaattaga aatactcccc cggtttatgw      6720
     aaawccaaca gatttttact ccattcttgc cggtccgctt cactgttttg ctttgtccac      6780
     tctgactgac gatttgacgt ttgtcgggat ggcatagtct ttttcacatc cagagcgacc      6840
     gcgcggatga cagtgacagt tcgctaagct gtcaaagtag ttcatgcgat gttataggtc      6900
     tgttcgatat tctcattttc ggttttggtt agaattctat gtttttcgtc aagtttcaaa      6960
     ttgatgggta gaattcgtat tgtggtcctg tagggattac gtttaggcaa ttttaaatgc      7020
     agattgtgtc aaaatgagtt ttgatgttgc atttaattgc agttcgttga gtgatcaagt      7080
     tattgacggt aaagtttccg ttgtttgatc atggcttacg ttacgttcag ttcagttgag      7140
     ttcagctaga gagattattg aatagaattt gtacgttgat gaatgaatga ccttagtgta      7200
     tgttactttt tcagttcagt taagtttttg tggagttgca acgcttaagt tttttgtaag      7260
     ttatgaaaat ttgatcaagt tattgatcaa attttcataa aaatggatgg ggtga           7315
//
ID   Gypsy-140_AA-LTR repbase;    DNA;    INV; 1838 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   02-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-140_AA_;
KW   Gypsy-140_AA-LTR; Gypsy-140_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1838
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1014-1014 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1838 BP; 478 A; 392 C; 406 G; 562 T; 0 other;
     tgtaacgttt tacgtttttt gtagtttaaa atacattaat aataaacaaa aaaataaaac        60
     aaaaaatgat tttagttttt atagcgttga ataaaaatat tttgtttgcg ttcgtaaaat       120
     gcagcgatcc atgtagcgta agcgtatgtg gattgcgttt gccataacga attatgaaag       180
     cttcgcaaag cgccatgtac acattttggc ggactacagg cgtaattcag atttgtcgcc       240
     atacctacca agcgccatgc aaaagcagtt ggcgcgattt tctataatag ttgctttttg       300
     gtttgaatag ttggacggtc agaataggca gtttcttggc gcaagaattt cttcaactcg       360
     ttcatttcgc tacgaagttg gctggagtac agaagtgcgc gaatcaagta ttctaatacg       420
     ctcagttaaa gtgaagttta agttgaattt tagttcgaag tgaaaagtta gttctaaatt       480
     caaggtaaaa gttagtgagt gagtttgtgc aagaagttgt gttaaacgtt tggtatttct       540
     ttcgtctttt agaggaccga ggtccataaa ttactcgcgt ttctgttcaa aagattttat       600
     tacgtttatc tacacggaaa aaggtaatta tatttaatta atagcatgaa gacttaaaac       660
     taatgtgatt tcgcgttgga catgcagcgc tctgcgcttt ttccgtacgg ctggatttct       720
     ttccgttggt attcggcatt cgtccccgcc gaaccgtgaa ttgtgagtcc gttcatcgag       780
     gatttggaag tccgttcttc gtcgagaccc gtgtgcagtg caaaaggccc gcctttatca       840
     ggtagtcaaa cggaggcgcg agtgaagtcg ctaaagttat tctgtagcga attttccctc       900
     cttcaaacgt caattactga aggagaaggt ccagtcacgt tattccattt tggaccaatt       960
     tccgagagtt cggttcgttg tagcgtgacg tcaattacac gccgcgaacc tcgatcctaa      1020
     cccaaagata gggctgcatt actccccgct cggattagcg gacaggtacg cgaagccggg      1080
     tcgctgggta cgtgcttctc tattggaagg agcggatcgt cccgggtatt aataggcgaa      1140
     atcgccattt cactctcgtt tacgaaatcg gaagcttccg ttccagccgc cactccctcc      1200
     gcaacgttat ttcggccatt ttgcacgcgg gtcaattctt cgctgcccgc caatttgcag      1260
     cacggacacg ccggtggtcg ccatctcgct accgccatcg ccgagttcga tcgtcgccat      1320
     catcgagtct gcggagtcga cgttccgttc cccgtcaacg agccttcatc gagtcaacgt      1380
     aaaagcctgc gcaggtacgt caagagctta ttttacatgg ccatgtttgc tcttttccat      1440
     tccgtacggt ttttgctagt ccaacccgaa tgaatggtga atcgtttcct aaaataaaca      1500
     gttttgaaga aagattagtt actttttccg ttacgtttaa ctatgcttaa ataaaactac      1560
     tcgctaactt acattacgtt tcgttccgtt tattagctct tttgagtaag catcctcttc      1620
     tgaattccct aaaactttaa ggctgtggag gagtaaaagt cattcttgcg tttgattttc      1680
     tagtgttgtt taccaagaac cgttcaaaac tctcccagag agaaaaagtc tctaaacgtc      1740
     gggcaaatct gaacacgact ggtggtctct cattgagagt ggcgcttaag ccaccgagtt      1800
     tgctaaaaat ctctagtaaa gttttacgaa cggttaca                              1838
//
ID   Gypsy-141_AA-I repbase;    DNA;    INV; 4735 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-141_AA_;
KW   Gypsy-141_AA-LTR; Gypsy-141_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4735
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1015-1015 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3731-4198] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           497..1744
FT                 /product="Gypsy-141_AA-I_1p"
FT                 /translation="MESDMRAIPPFCCEHIERSRLAREWKSWKGTLECYFE
FT                 AHNVQDQKIMRAKMLYLGGPQLQRVFANLPDTEKFPLVSIEKRWYDLAVEK
FT                 LDDFFKPVRQDTLERHRLRDMKQMKDERFAQFVLRLRQQVAECGFEKYSSE
FT                 IAKVARFYFNLLNLISFNLCCNSKVLTEITLVDVIAQGCLSNELRSRILKE
FT                 DQTLTQIEALGAMIESVEEQVKGLSNLQSSGENVYRIEERKIGGRNFESSV
FT                 EKFNRTGNNQNTRDRAACFSCGRHGHFSNSPHCPARNQECRNCKMRGHFET
FT                 VCRKGRKRAAYENESKPVKKIRLIESTETPLENQAKETTEADKTYYAFYSG
FT                 NKSNMMTCCIGGVNWDMLVDSGADCNLITAEAWNKFKEVGIKVHSSTKGCT
FT                 RKLKAYGSENLLNVSGTFVADI"
FT   CDS           2600..4516
FT                 /product="Gypsy-141_AA-I_2p"
FT                 /translation="MFKVKELEFLGHNVTADGIHPSKVKTDAILSFRDPKN
FT                 EAEIRSFLGLANYMNKFIPNLATIDEPLRKLTQKGTFFEWKPQHAEAFEEI
FT                 KKIMSRVGQLGYYDVNDRTAVTADASPVGLGAILAQYDSQGQVRIISYASK
FT                 SLTDTESRYCQTEKEALALVWAVERFQVYLLGKPFDLVTDCKALQFLFTPR
FT                 SKPCARIERWVLRLQAFEYNVVHISGENNAADALSRLAVLDPKPFDIHEEL
FT                 LIREIATSAANSMALNWEEIEKESIEDEEIQNVQELIGTDQQLELPLAYRV
FT                 IAKELCQVGNVLLRTDRLVIPGRLRNRVLSLAHEGHPGSRMMKTHLRTHVW
FT                 WPKLDQDVDRFVKSCRGCCLVSAPEAPEPMVRKEMPSAPWEDVAVDFLGPL
FT                 PDGLYLLVVVDYYSRYVEVKEMISINVQAVIEELSVIFGRYGLPVSLRADN
FT                 GPQLSENCNELKTFCLENGIKLVNTIPYWPQQNGEVERQNRTILKRLRIAQ
FT                 ELGKSWRKELSQYLLVYHSTNHPTTGKSPSELMFGRRIRSKLPQVPVYHSN
FT                 DEEVRDMDRLQKEKGREYSDKKRKANHSKIEVGDEVLIKRMKKNNKLDTDY
FT                 INEEFVVVRKQEADCTLKSIKTGREYRRNVAHLKKIEKNYK"
XX
SQ   Sequence 4735 BP; 1547 A; 751 C; 1110 G; 1325 T; 2 other;
     atctggcgac gaggtgaaag cggaaggtat tttatttatt tttattacat taacattacc        60
     ggtttatttg ataaattcaa aatgtcgttt tcgacgaaac agtgaaaaac ggaggttctg       120
     ccatttgtgg tagcgattaa aatttcaagt tagaaaatgg agtttctacc tttttggtag       180
     cgatcggatt atgcattcaa agtggagttc ctactattta agtagcgttc ggatttagga       240
     tccatagaat ggagtttcta ccatttcggt agcgatcgat ttagagctcg aattaagaac       300
     ggagattcca ccttgatggt ggcgataaaa tcttatatac tcggagtatc tgccttttcg       360
     gtagcgaaaa agacgtaaac tgttaaaaaa aaactatggc gacggcagac gattcagttg       420
     aatttattta aaggatttgg gttgtctgaa accagtttgg gataattgtt tatcatgtgt       480
     ttttaaaata ttacagatgg aatctgatat gcgagctata ccaccgtttt gttgcgaaca       540
     catcgaacgt tctcgattgg ctagagagtg gaaatcttgg aaagggacat tggagtgtta       600
     tttcgaggct cataatgtac aagatcaaaa gattatgaga gccaaaatgc tgtatcttgg       660
     tggtccgcaa ctgcaacgag tgtttgccaa tctaccagat actgagaaat ttcctttggt       720
     atctattgag aaacgttggt atgaccttgc ggtagaaaaa ctggatgatt ttttcaaacc       780
     tgtgcgacaa gatactctag agagacatcg tttacgagac atgaaacaga tgaaggatga       840
     acggtttgcg cagtttgttc tccgtttacg ccaacaggtg gctgaatgcg ggtttgaaaa       900
     atattcctct gaaatcgcaa aggtagcacg tttttatttt aacttattaa acttaatttc       960
     atttaatctt tgttgtaatt ccaaggtgct aactgaaatt acgctagtag atgttattgc      1020
     acaaggttgt ctttcaaacg aattacgaag tcgcattttg aaggaagatc aaacgctgac      1080
     gcagatagaa gctttgggag ctatgataga aagtgtggaa gaacaagtga aaggtctgtc      1140
     caacttacaa tcatccggcg agaatgttta tcgtattgaa gaacgtaaga tcggtggaag      1200
     aaattttgaa agttctgttg aaaagtttaa tcgtaccggt aacaatcaaa atacgcgaga      1260
     tcgtgctgca tgttttagtt gtggaaggca tggtcacttc tccaattctc cacattgtcc      1320
     tgcgcgtaac caggaatgca gaaattgcaa aatgcggggt cattttgaga cggtgtgccg      1380
     aaaaggaagg aagcgtgctg catatgagaa tgaatccaag ccagtgaaga aaatacgact      1440
     aattgaatct acagagacgc cattggaaaa tcaagcaaaa gagacaactg aggcagataa      1500
     aacttattat gcattttact ctggtaacaa gtcaaacatg atgacctgtt gtattggcgg      1560
     agtcaactgg gatatgttgg tggattcggg agctgattgc aatttaataa cagccgaagc      1620
     atggaataag tttaaagaag ttggtatcaa ggttcattct tcaacgaaag gttgcacgcg      1680
     gaaactgaag gcttatggaa gtgagaattt gttgaatgtt tccggtacat ttgttgctga      1740
     cattsaagta ggtcacaaaa gtgtagaagc tgaatttttc gtggtaactg gwggccaaca      1800
     atgtttgttg ggagatgaaa cctctaagca gttgggtata ctcaaggtcg gattagatgt      1860
     gaataaagta acggaagaag tgaagccatt ttcaaaaatt tctggagttc aaatcaaaat      1920
     tcacactgat ccggaggtca aaccagtttt ccaaccactg agaagggtcc cgataccact      1980
     agaatctgct gtaaagacaa aattggaaca attgcttgca agagacataa ttgaagtcaa      2040
     gactggacca acgagctggg tatctccact ggtagttgtg gggaaagcaa acggcgatgt      2100
     taggctgtgc ttggatctgc gtcgagttaa tgaagcggta ttgagggagc gtcatccgat      2160
     gccaatagta gacgagtatt tggctcgtct gggaaaagat atgatacgca gcaaattaga      2220
     catccgtgaa gcatttttgc aagtagaact tgaacctgat tcaagagata ttacaacctt      2280
     cataacaagt caagggctat tcagattcaa gcgattaccg tttggtttag ttactgcccc      2340
     tgaagctttt caacgaacca tggatgaaat actcactggc tgtgaaggaa cgtattggta      2400
     tttggacgat gttatcattg aaggatccac tgaggaagag catgatcgtc gcgtaaataa      2460
     ggtagtttaa tgtttagtac tatttggttt ttttttttgt tttaataatc gaaaataata      2520
     attaaataaa tcaatttgtc gtgtttaggt tcttaaccgt ttgaagggac gtaatgtgga      2580
     attgaattgg gataaatgca tgtttaaggt caaagaattg gaatttctcg gacataatgt      2640
     cacggcggat ggtatacatc cttcaaaagt taagacagac gctattcttt cgtttcgcga      2700
     tccaaagaat gaagctgaga tacggagctt tctgggtctc gctaattaca tgaacaagtt      2760
     tattcctaat ctagcgacta tcgatgaacc tcttcggaaa ttaactcaga aaggaacctt      2820
     tttcgagtgg aaaccgcaac acgcagaagc ttttgaagaa attaagaaga ttatgagtag      2880
     agttggacag ctggggtatt acgacgttaa cgatcgcact gctgtaacgg cggatgctag      2940
     tccagttggt ctaggagcca tcctcgctca atatgatagc caagggcaag tacgtataat      3000
     cagttatgct tcaaaatcat tgactgatac ggaatcacga tactgtcaga cagaaaaaga      3060
     agcacttgct cttgtctggg cagttgaaag gtttcaagtg tacctattgg gaaaaccatt      3120
     tgatctagtg acagattgca aagcattgca gtttctgttt actcctaggt ctaagccatg      3180
     cgctcggata gaaagatggg tactccgttt acaagcgttt gagtataatg tggttcatat      3240
     ttctggcgaa aataatgcag ctgatgcttt gtccagatta gccgtgttgg accccaagcc      3300
     tttcgatatt catgaagagt tgttaattcg agaaatagcg acatccgcag ctaattcgat      3360
     ggcgttaaat tgggaagaaa tcgaaaagga gtctatagaa gatgaagaaa ttcaaaacgt      3420
     acaagaattg atcggaacag atcagcaatt ggaacttccg ttggcataca gagttatagc      3480
     caaagagttg tgtcaagttg gaaatgtact acttcgaaca gatcgtctag ttattcctgg      3540
     aaggcttaga aatcgggttc tgtcattggc gcatgaaggg catccgggta gcagaatgat      3600
     gaaaacgcat ttacgaacac atgtatggtg gccgaaactt gatcaagatg tagatagatt      3660
     tgtgaaaagc tgtcgaggtt gttgtttggt atctgcacct gaagctccgg aaccaatggt      3720
     aagaaaagag atgccttcag cgccttggga agatgttgca gttgatttcc ttggtccatt      3780
     gccagatggt ttatatttat tagtagtagt tgactattat agtcgctatg ttgaagtaaa      3840
     ggagatgata tctatcaatg tccaagctgt gattgaagaa ttaagcgtca tttttggtcg      3900
     ttatgggctt ccagtatctc tcagagccga taatggaccc cagttgagcg agaactgcaa      3960
     tgaattgaaa acattttgtt tggagaatgg aattaaattg gtcaatacca taccatattg      4020
     gcctcaacaa aatggagaag tggaacggca aaatagaaca atacttaaaa gattgcggat      4080
     tgctcaggaa ttaggaaaaa gttggaggaa ggaattgagt cagtatttgc ttgtttatca      4140
     ttcaactaat catcccacga ctggaaaatc accatccgag ttgatgtttg gaagacgtat      4200
     ccgaagtaag ttaccacaag ttccagtata ccactcaaat gatgaagaag ttagagatat      4260
     ggatcgatta caaaaggaaa aaggaagaga atacagtgat aagaaacgga aagcaaatca      4320
     cagtaagatt gaagttggcg atgaagtact gataaaaaga atgaagaaaa ataataaatt      4380
     ggatacagac tatatcaacg aggaatttgt tgtggtgcgg aaacaggaag cagactgcac      4440
     attgaaatcc atcaaaaccg gaagagaata taggcgtaat gttgctcatc ttaagaaaat      4500
     agaaaaaaac tacaagtaat gagggatctg tgtcacagta tggcaatgaa gaaggcgaaa      4560
     gtaatgtaaa taataacgaa gcactaacag aacagaatag aacaaacaga acacgcaagg      4620
     agccacatca tttcaaagac tatgtaccat attaacataa taattatcta aaccgtaatt      4680
     tttaaatata atgaattctg aacgtaacat aatttctata aaaacaagga aggat           4735
//
ID   Gypsy-141_AA-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-141_AA_;
KW   Gypsy-141_AA-I; Gypsy-141_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-183
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1016-1016 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 183 BP; 57 A; 36 C; 35 G; 55 T; 0 other;
     tgtagagatt gatattatat agcaagctat gttttaattt agtacttagc aacgatgaat        60
     aaacaagcta ggtgaggatt cctactctta ccgtactggt gaacggtcac acagaaatac       120
     tgtctttcat tccggagaat tggccaggat cttgatccct aagaattacc cttgaaccct       180
     aca                                                                     183
//
ID   Gypsy-142_AA-I repbase;    DNA;    INV; 7343 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-142_AA_;
KW   Gypsy-142_AA-LTR; Gypsy-142_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7343
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1017-1017 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5059-5541] - Integrase core
CC   'AACT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..2638
FT                 /product="Gypsy-142_AA-I_2p"
FT                 /translation="MEWYKINACYLDESELNYELLLRDYSTRGSLEERRRD
FT                 LRALLRDPQSERLVRVTEHMMVDDLCTVPRKLKEIADILFRGSDPSCLSRL
FT                 VHYHQRIRRYQPRTRRQQEDVQYLLDLIARITMHYYGLNFDDTVRSVPIAE
FT                 STVRVPRSDGNTAGAPFSVIIGPQSISENTAVEHEITQRNRESPWLMTWNE
FT                 AEEAVGGNMERSDDTTGVIPALVENLLNFRNQDRTQTTGAVPRQANPPDAS
FT                 PEQCGNPSSIAHGDGPTFDHAPNVHGVQTGAVTEPNVFRPTIPLRGMSATI
FT                 DRSRSGCSTPVPNPIRSSPVSNAVPENINLQNNEYVHVSEISTYVQRCFDQ
FT                 LVRQRFSTVRLDPAVDALSNNLAEMNFHPRTQALRDNRNTSVNQTFRFPDP
FT                 SPPLQLSGPTLEQRSTPVPNPSGWNTMNSTSRPRNDFRSAANSGVGNVTFA
FT                 PMNQMNSGRSSASGYPRRLPHQQCSIIEKWPKFTGDTNSVPVTDFLRQIDI
FT                 LCRSYDITKPELRMHAHLLFKDGAYVWYTTYEEKFTSWEMLESYLKMRYDN
FT                 PNRDRIIREEMRARKQRPTELFSAYLTEMEMLAQRMMKKMTEAEKFEVIVE
FT                 NMKQSYKRRLALEPIHSIEHLAQLCFKFDALESNLYSTAAHSRPAINQLDC
FT                 DENYEDEQRELEETEELNALKARFNKRFPVTKPTPGDSKDKTKQTMCWNCQ
FT                 GVGHMWRECDKRKTIFCHVCGLADTTAYRCPNKHELGQKEELPKNE"
FT   CDS           3109..5910
FT                 /product="Gypsy-142_AA-I_1p"
FT                 /translation="MPFADDYFGDRSKEVCFQIVPSSDNNLSDPTENIDES
FT                 LEMPTVELPQKTFETLDDLSTEHLLSDTERKALFEAIKQLPETHEGSLGRT
FT                 QLIQHRIDLLPDAKPKRIAYYRWSPNVESVIDAEVERMEKLGVIEECHGPV
FT                 DFLNPLLPIKKANGKWRICLDSRRLNQCTKKDDFPFPNMMGILQRIPKSKY
FT                 FSVIDLSESYYQVPLEASAKDKTAFRTNKGLYRYTVMPFGLTNAPATMARL
FT                 MTRVLGHDLEPYVYVYLDDIIIVSNSIDEHIRLIQIVAERLRRAGLTINLQ
FT                 KSKFCQKKIKYLGYVLSEEGLSMDVSKIQPVLDYPAPKTVKDIRRLLGLAG
FT                 FYQKFLPNYSEITTPITNLLRKGMKKFQWTEEADAALQKLKTALVSAPILA
FT                 NADFSLPFIIETDSSDLAVGAVLAQVHDGVRKPIAYYSKKLSSTQRRYSAT
FT                 ERECLAVLLSIENFKHFIEGSQFIIQTDAMSLTFLKTMSIESKSPRIARWA
FT                 LKLSKYDMLLQYKKGSDNVPADALSRAVNTIDVTSSSDPYITQLIKMVQTV
FT                 PERYPDFRISDGKVYKYIIGSTVSEDPSFRWKYVVPVVERRDIIRRIHSEA
FT                 HLGFVKTLSKIRERHYWPRLASDVKRFCSQCEICRESKTPNINVQPICGKP
FT                 KHCSRPWELISMDFLGPYPRSKRGNVWLLVVSDFFSKFVMVQCLRSATAAS
FT                 TCNFVENMIFNVFGAPSICITDNATVFKSELFQKMLQRFSVTHWPLSVYHP
FT                 SPNPAERVNRVIVTAIRCSLNREKDHRDWDKDVHQIAKAIRTNVHESTGFS
FT                 PYFLNFGRNMISSGSEYEALRESESPKSPQEVSKDMELLYSKVKENLLKAY
FT                 QKYSHPYNLRANRKHQFEKGDVVYKKTMYLSDKSRNFVGKFANKFEKVRVK
FT                 EVVGTNTYVLERLDGQRIAGSYHGSFLKRV"
XX
SQ   Sequence 7343 BP; 2172 A; 1520 C; 1586 G; 2063 T; 2 other;
     ttttggcgcc caacgtgggg ccttcgaaaa gcaatagttt cacatttcaa attaaattaa        60
     ttatttttct ttgactggct ttgtacatat taaattgaat tcattgctta attgaactct       120
     tacatagtat tttcagttac ttttcaacct attctgtcaa tttcattttg tttcttcagt       180
     acctgcgcgg ctaggtttaa gtttgattga taatttcggt aattagtgat taagttcggt       240
     cggttattag ttttggtttt cggttattag tgtcggtttt cggttataag tattatcggt       300
     ttagtgtaaa attttcagtg aattgtgttt gaatttgtta aaaaaaaaat ctttaattta       360
     agtttttctt cttttgaatt gaattttggt ttgtttgaca atggagtggt ataaaataaa       420
     cgcttgttac ttggacgaaa gtgaacttaa ttatgaactt ttgttacgtg actattctac       480
     gcgaggatcg ctcgaagaac gtagacgaga tctccgtgcg ttacttcgtg atccacaatc       540
     ggaacgatta gtgcgagtaa cggagcacat gatggttgat gacctctgca cagtaccaag       600
     gaagttgaag gagattgcgg acatcctgtt tcgtggatct gatccttcat gcctttctcg       660
     cttggtgcac taccaccaaa ggattcgacg ctaccagcct cgtactcgtc gtcagcaaga       720
     agatgtgcag tacttgctcg atctgattgc caggataacc atgcattatt atggccttaa       780
     ctttgacgat acagtgcgtt cagtaccaat tgctgaatcc acagttcggg tacctcggtc       840
     agacggaaat accgcaggtg caccgttcag tgtgatcatt ggacctcaat ccatttccga       900
     aaataccgct gttgaacatg agattacgca gcgtaatcga gagtctccct ggttgatgac       960
     ctggaatgag gcagaagaag cggttggagg aaacatggaa cgatcggatg atacgacggg      1020
     tgtgatacca gcactcgttg aaaatctttt gaattttcgg aaccaggatc gaacacagac      1080
     caccggagcg gttccgcgtc aagctaatcc accggatgcc tccccagagc agtgtggtaa      1140
     tccttcctca atagcacatg gagatggtcc tacmtttgac catgcaccga atgtccacgg      1200
     agtgcagact ggagccgtaa ctgaaccaaa cgtgttccgt cctacaattc cattgcgggg      1260
     aatgtcggcg accatcgatc gttcaaggtc tggttgttcg acgccagttc cgaaccctat      1320
     ccggtctagt ccggtatcca atgccgtacc tgaaaatata aatttgcaga ataatgagta      1380
     tgtccatgta tccgagattt caacgtacgt ccagagatgc ttcgatcagt tggttcgcca      1440
     gaggttctca acggttcggt tggacccagc cgttgatgca ctttcgaata atctggccga      1500
     aatgaatttc catcctcgga ctcaagctct acgtgacaat cggaatacca gtgtgaatca      1560
     gacattcaga ttccctgatc cttcgccacc gttgcagtta tctggtccta ctttggaaca      1620
     acgtagtacc cctgtkccaa atccaagtgg ctggaatacg atgaattcaa ctagtagacc      1680
     aagaaatgat ttccgatccg cagctaactc tggtgtagga aacgtcacgt ttgctccgat      1740
     gaaccagatg aattctggca ggtcgtctgc tagcggttac cccagacgtt tgccgcatca      1800
     gcagtgcagc ataatagaga agtggccgaa gttcactggc gataccaatt cggtccctgt      1860
     cacggatttt ctgcgacaaa tagacatttt gtgtagatcg tatgatatta caaaaccaga      1920
     gttacgaatg cacgcccacc tacttttcaa agatggcgcg tatgtgtggt acacaacgta      1980
     tgaggaaaag tttacgtcgt gggaaatgtt agaatcttat cttaagatgc ggtatgacaa      2040
     tcccaaccgg gatcgcataa ttcgcgaaga aatgcgtgca agaaaacaaa gacctacgga      2100
     gttattcagc gcctatctta cggaaatgga aatgctagcc caaagaatga tgaaaaagat      2160
     gactgaagct gagaagtttg aagtcattgt ggaaaatatg aagcaatcgt acaaacgtcg      2220
     acttgcgtta gaaccaattc actcgattga gcatctggcg caattatgct tcaaatttga      2280
     cgctctcgag tcgaatttgt actcaactgc agcacattcg aggccagcaa tcaatcaact      2340
     agattgtgac gagaattacg aagatgaaca acgtgaactt gaggagacgg aagaattgaa      2400
     cgctctcaag gcgagattca ataaacggtt tccagtgacc aaaccaaccc ccggagatag      2460
     caaggataaa actaagcaaa cgatgtgttg gaattgtcaa ggcgttggtc acatgtggcg      2520
     agaatgcgat aaaagaaaga ctatcttctg tcacgtctgt ggattagccg atactacggc      2580
     ctataggtgt ccaaacaaac acgagttagg ccagaaagag gaattgccaa aaaacgagta      2640
     ggcgtgggca attctgggaa tccttgccct caacgcaacg atccagaggt tcccaaaccc      2700
     ttctataaca tcttcaataa tgttcatcaa atcaacacaa agtttcatcg ttgtccacac      2760
     ttgaaagtca agatactctc agaagaaatc gaaggccttg cagatactgg cgcaagccta      2820
     acgataatta gttcggttga cttagttaac aaattgggtt tgaaaattca tccgatagct      2880
     gttaaaatct cgacagctga cggtacagca taccgatgtc taggcttcgt caatgcacct      2940
     ttcacatatc aggacaaaac tcatgtgatt cagacagtta ttgttccaga agtttcaaaa      3000
     tgcttgatat tgggcgtgga cttcttgaat aaatttggat ttcgacttct tcctccatct      3060
     ccagcaacag tagcaagagg tcaagatgaa acaagtagtt caaacaccat gccatttgca      3120
     gatgactact ttggagatcg cagtaaagaa gtttgcttcc agatcgtgcc tagttcggat      3180
     aataatttgt cggatcctac ggaaaacatc gatgagagtt tggagatgcc aaccgtagaa      3240
     ttaccacaga agacctttga aaccttagat gacctaagta cagaacatct cctttcggac      3300
     acggaaagaa aagccttgtt tgaagcgatc aagcagttac cagaaactca tgaaggcagc      3360
     ttgggtagga cgcagttgat acagcaccgt attgatctgt taccagatgc caaacccaaa      3420
     cgtattgcat attatcgctg gtcacctaat gtcgaaagtg tcatcgatgc cgaagtggaa      3480
     cgaatggaaa agttaggagt tattgaggag tgccatggtc cagttgattt cctcaatccg      3540
     cttttaccca taaaaaaggc aaacggtaaa tggcgtatat gcctggactc ccgcaggctg      3600
     aatcaatgta ccaagaaaga tgactttcca ttcccgaaca tgatgggaat tctccagaga      3660
     attcccaaat caaaatactt ttcggtgatt gacttgtcgg agtcatacta ccaagtgccg      3720
     ctcgaggctt cagcgaagga caagactgcg ttccgtacga acaaaggttt ataccgatat      3780
     actgtcatgc cattcgggtt gacaaacgcc ccagcaacca tggcccgatt gatgacgcgt      3840
     gtattaggtc atgatttaga gccatatgta tacgtttatt tggacgatat tattatcgtg      3900
     tccaacagta tcgacgagca tataaggctt attcagatcg tggcagagag actacgtaga      3960
     gcaggattaa cgataaacct ccaaaaaagc aagttctgcc aaaagaagat caaatatcta      4020
     ggctacgtat tatcggaaga aggtctgtcc atggacgtaa gcaaaattca accggttctc      4080
     gattacccag ctccgaaaac ggttaaagat attcgccggt tattaggact tgccggattt      4140
     tatcagaaat tcttgccaaa ctattcggag attacaaccc ctattacgaa tctgctgaga      4200
     aagggaatga aaaagtttca gtggactgaa gaggcagacg ctgctctcca aaaacttaaa      4260
     acggccttag tatctgctcc catattggca aatgcagatt tttcattgcc attcataatt      4320
     gagactgaca gctctgactt ggctgtaggc gcagtgctag ctcaagttca tgacggagta      4380
     cgcaaaccta ttgcgtacta ctccaaaaaa ctttcgagta ctcagcgacg ctatagtgcc      4440
     acagagcgtg aatgcctagc agttctcttg agcattgaaa actttaaaca tttcattgaa      4500
     gggtcgcaat tcatcatcca aactgacgcg atgagtctaa cgttcctaaa gactatgtcc      4560
     atcgagagta agtctccaag aattgctcga tgggcgttaa aactctcaaa atacgacatg      4620
     ctcttgcagt ataagaaagg gagcgacaac gtacctgccg atgcactctc tcgtgcagtt      4680
     aacactattg atgtgacatc tagttcggac ccgtacatca cccaactaat taagatggtt      4740
     caaaccgtac ccgaacgtta tcccgatttt cgtatatcag acggaaaggt ctataagtat      4800
     ataattggtt caactgtatc tgaagatcca tccttccgct ggaaatacgt tgttccagtt      4860
     gttgaaagga gagacatcat cagaagaatt cacagcgaag cccacctagg gttcgtcaag      4920
     acactttcca aaattcgcga aaggcattat tggccacgct tagcttcaga cgttaagcgg      4980
     ttttgcagcc aatgcgagat atgccgtgag tcaaaaacac ccaacattaa cgttcaacca      5040
     atctgcggaa agcccaagca ttgctctcgc ccttgggaac taatatcaat ggacttctta      5100
     ggcccatatc caaggtccaa gagaggtaat gtttggttgc ttgtggttag cgactttttc      5160
     tcaaaattcg tcatggtaca atgcttgcgt tctgcgacag ctgcgtccac ttgcaatttc      5220
     gttgagaata tgattttcaa tgtattcggc gcaccatcaa tttgcattac agataatgca      5280
     acagttttca aatctgagct gttccagaaa atgttgcaaa gattctccgt gacccattgg      5340
     cccctgtccg tctaccaccc cagccctaat ccggctgagc gtgtcaatag agtcatcgtg      5400
     acagccataa gatgctcgtt gaacagagaa aaagaccacc gcgattggga taaggatgta      5460
     caccaaatcg cgaaagctat acggactaat gttcacgaaa gtacgggttt cagcccctac      5520
     ttccttaatt ttgggcgaaa tatgataagt tctggtagtg agtacgaagc cctgcgagaa      5580
     agcgaatcac ctaaaagtcc ccaagaagtc agcaaagaca tggaacttct ttacagcaaa      5640
     gttaaggaaa acttgcttaa ggcgtaccaa aagtacagcc atccatataa cttgcgtgct      5700
     aatcggaaac accagttcga gaaaggagac gtggtgtaca agaagaccat gtatctctca      5760
     gacaagtctc gaaatttcgt aggcaagttt gctaacaaat tcgagaaagt tcgcgtgaaa      5820
     gaagtcgttg gtacgaacac ctacgtctta gaacgtctgg atggccaacg aatagcagga      5880
     agctatcacg ggtcattctt gaaacgagtg taatacgtaa agctatgtcg gtccttcgcg      5940
     agaaggtaca taaacaacga aactattact gaaaatactc aatgaggttc ctaaactacg      6000
     tccaatgttc gagatgtcag ctagttctgt ttcctcacat tgtcgactaa aaatattctg      6060
     tccaaaaaca caagctatga ctgcattacg gccgcgtaat gcatatacta cttcaaatct      6120
     aaaatacaca tctgtggtgc aacgatgcag tccgatctga gacgtcctag tgttccctcg      6180
     atcgttgacg aactgataag caactttaaa acaacaagct atgacggtgc atcctaatag      6240
     gcacataaac caaaagtttg caatgaaaca ctctttgagg tgaaaaatac atattgccga      6300
     tgttcgagaa gtcatcataa atgtttcctc acatcgtaga ccactttcat gcagttgcat      6360
     aagtcgaaca aacctagaat agaaatccaa ttagaatctt gtttatatcg ttccgtttat      6420
     gtttgtgttg agctgtgttg cattgcttgc aacttatata ggtcaatgat gcacttcgtt      6480
     gaccttgacc caaatcgaat aatttcactt tgtttacaaa ttgcaatagc ccggaatcac      6540
     aaaatctgtt caatatttcc aatctttaac catagatttc atccacagtt cactctatag      6600
     ttagcataaa atcgtttcac agtagtttcc gtcgtcgaat cgcagttaaa atcattaatt      6660
     ttgaagaaat taggtagaat tagtttacct ctatcccatc agcacagctc gcgttcgttt      6720
     tttgtgttga tcgatttcgt gtttcgtttt tgacagatcg tcaaaaagct ttcgtgttag      6780
     aacccggtac tgaaagttcg ggatatgtgt gaagcgtttg tcgagatgtt tatgcgttcg      6840
     tgattcgtgt ttttgctatg acattttgaa atgaatgatt gcggttaatt aattaatgag      6900
     tgatttcgcg tatgataagt tattaagtaa tcatgtatat tttcagacca ttgttctgaa      6960
     gtacgttggt tattcggaag aaaatatgct cagacatttc tgagggtaat tcggttttag      7020
     tcagtaattc gttagttgaa gatgctcaga catttctgag gtaaattcgg ttttaggtat      7080
     tagttttctc agacgtctct gaggtcattt cggttaagat aagttggttg aatgagtacg      7140
     gttgtttgta aagcatgtga gagttcaata tggcatagca ggaccaatca tttgtttgta      7200
     tttgtttagt ttactagttc agaattcttg tatgttcttc gatgtagttt gaattaaatt      7260
     agagtttgat gtttaatctg tgaaattaat aaaaattttg aaattaattt caaaattttt      7320
     attattatta gtgtaggcga ata                                              7343
//
ID   Gypsy-142_AA-LTR repbase;    DNA;    INV; 1807 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-142_AA_;
KW   Gypsy-142_AA-I; Gypsy-142_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1807
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1018-1018 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1807 BP; 486 A; 353 C; 399 G; 563 T; 6 other;
     tgtaacactt aaatgttttg tgccagtcta agaatattcc ctttttgttc ataaccaaaa        60
     gatcagcaag ctttaagagt agcttttgtg cccaaaagag taaagcttaa gtaagtgttg       120
     cgcacggtgc ataaccaaag gcgaatgaac tggacgctta tgaaacattc gataagttac       180
     ggaattttcc actaattaat ttgtacctgg ccctttgaat ttgctaaaac caccaatcgg       240
     gaaaagcgaa ccagtggaaa gtttttagat tcmttctgag tcctccagag ctgaccaata       300
     aaaawsatcg tacaaaaaag agagtacacg ataaggtgga aattgcgtcg tagctttaag       360
     gctcgaacaa gtttattgcg cgctttccat tttattctgg tggagtcagt taaagtgaaa       420
     agatcatttt ccgaggtagt gaagctttct ccgaaagtga agtaaaagtt attaaagtga       480
     gcttttcgtt aaatttgtga acttttaaat ccgaattcga agtaagttcg cgagttttca       540
     gtaattactc gaataaattg attaatcgag tttttcagta tttttgaatt ttcagagttc       600
     gaatagtttg accggtgaaa attgaataat tgtgaatgat ttattgtgac tattcaggta       660
     agcctttggt ggagaataat taktagattc agttagtgag aatttatcac gttgaatagg       720
     catcgtcaag cccatccaac gtgggcagct tgtccaggct ggtgcaaatt gtccctggat       780
     tgtcctgagt cacttcgagt ccacgtgatc gggaatcgcc cacgtgttcc agtagggttc       840
     cgactacgga gtcccttcct gtgtctagcc gaagactgtt ccgactagtg ggccattgtg       900
     ggtggaaaat ctcgtccaac agtcaagctt tcccccgaat cgataagctc agacgtgagc       960
     ttgtgcccaa gtgtgtgctc gagtcgccga tccgtaatcg agtagagtta tcgacgattg      1020
     gactcgtttc gccaaagcgt gaggcgtaga gcaacaacaa cccgctctca ctccaccaac      1080
     cgccagggac gcctctaccc tgaagatcgt gcccacgcgc gagtctaccg tatagcacac      1140
     gttccaatta gaatccgacg aagctctcct gccgtcgagg gacgatcaag ccatcgccgt      1200
     tggagcacca cgccgatgca gttaaggtca gatccacact agcttttgaa ctgattgata      1260
     gtatccgaaa attgtatata tagaataagc taaatgagtt aaatgcgtga cgtcaccaga      1320
     ctagatacta ggttttatwt gaatgttcac aataaattga gagcttgcat acgttttgaa      1380
     taggtcctat gcaaataact ctctaaattc atttttctwa aataaattcg tttaaattga      1440
     ctttgtttca taatatttat ttcgagttcg gattgaaaac gactctacta ttcttttacg      1500
     tttatttttt gtaaatatct agatttgttg gttccttaag ttaagacttt ttctgccgct      1560
     cagttctggt tgactttttc ttttcttttt ggtttaggtt tccggttttc agttggtttg      1620
     tagttaaatt tccgttcatt tgtcctttcg tgtgtgccat tttggagagt ttttgcttct      1680
     gcattgaact atttgcgacc tgccctgaga agggtggtct cataccgggc ttagacagag      1740
     tgacggtcct tcggaagtcg aaggtggcgc taaagccgtt gcttgaggag cagagtagaa      1800
     cgttaca                                                                1807
//
ID   Gypsy-143_AA-I repbase;    DNA;    INV; 7235 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-143_AA_;
KW   Gypsy-143_AA-LTR; Gypsy-143_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7235
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1019-1019 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5200-5682] - Integrase core
CC   'CAAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           438..2789
FT                 /product="Gypsy-143_AA-I_2p"
FT                 /translation="MENYYMNADDLNDEEVAYELKLRNSAIGRSTDNRRVL
FT                 RYLIRREENQEFPTSNTINDEYVTVAAAVKQIEDSLLAGRPIGCRSRLIHH
FT                 YRRLRRCHATTASGEQTRLALMKFVFGLAGRYFQLDLNRLGAVSNAGVSSE
FT                 PTGVVSPPNQSVGGQMRLATPPMVNPEMQSSAEGAVGGETRNDAVEDPLQM
FT                 SENVLNPFIVENRHSLDSRFPAPGNLQSEMQQASLGRMSAEGNPLPFRNVR
FT                 FRSGEDLSCLNPPRQNLSSVDPEASGGSVPQPLNVIGFNEERNSVAGTVPK
FT                 PSRGSRTDFWSMGPPVSQGEPSSNPQEGQYRPWLDERVRQPSNAGNSVPEP
FT                 RETVSVQPANTNANQQLNLREYVHISEIENYVQSCVRTLLNERSDRPLVRE
FT                 TVVNNVSEQFANFGISSTGERNESVPRLSPPLQLQNAPGPQSSSNNIPFTP
FT                 LLGIGTERNSMPFQSQLNSTQMPQFAGNTQSPIQFPASLSSGNNGTLGQRR
FT                 LPHQTCNIIEKWPKFAGDSNPVPVIDFLRQIDLLCRSYQVSKEELRTHAHL
FT                 LFRDDAYVWYTAYEPKFNSWDTLLYYLQMRYDNPNRDRFIKEEMRNRKQRP
FT                 NELFSAFLTDMETMAQRLIKPLTEGEKFELIIENMKLSYKRRLALEKIYSV
FT                 EHLAQLCYKFDTLEGTLYGQRVQTKPHLVNEVLLEEEDEFVVQADDEEEIA
FT                 VLQAEKVTSNKARLSPADNARSSFNNGQRQPLCWNCRKVGHIWKECDRQKT
FT                 IFCHVCGHPDTTAFRCPQQHNIRPLSEVKSKNG"
FT   CDS           4756..6057
FT                 /product="Gypsy-143_AA-I_1p"
FT                 /translation="MTLSCDIKKGCDNIPADCISRSIYTVHIHLSDPYIDG
FT                 LKYQIEHNPQKHPDYEVVNGTVFKFIANSTLIEDPAHRWKQVVPGPDRRDI
FT                 IKEVHCEAQLGFLKTLTKIRERYFWPSMASDTKRYCSSCKVCKESKVPNQN
FT                 VQLSCGKLKVCSRPWEIISRDFLGPCPRSREGNMWIQIICDFFSKFVLAQY
FT                 MKTSTAPLVCTVMENLVFNLFGAPSICITDNAKVFVSDPFKKLLKEYGVTQ
FT                 WNLAVYHPAPNPAERVNRVIVTAIRCALNKQADHKNWDDSVQTIARAIRTS
FT                 VHESTGHTPYFVNFGRDMISHGQEYENLQELGDGQDYDATKRKEELTKLYE
FT                 LVRSNLYKAYQKYSRPYNLRSNQKHTFKKGDIVYKRNVHLSDKSANFVGKF
FT                 GSKFTKARIKGVLGTNTYILESEDGHRIPGTFHGSFLKRA"
XX
SQ   Sequence 7235 BP; 2122 A; 1477 C; 1596 G; 2035 T; 5 other;
     ttttggcgcc caacgtgggg cctggctttt taagcttggc attgctgatt agtaatttga        60
     aagttggcaa ttggaaaatt gactaggatc tttttaaaat tgattgaata ttcgatctga       120
     attgaaatta ggataacaaa ttttgaattt tgattgcaaa tgcaatcggc tatcggttta       180
     gaataataaa ttattgaatt tcggttcgtt tgaagtcggt tagtttaata tcggtttaaa       240
     ttcggtaatt tttcggtgaa attttgtttt ttttttcgat aattgcttat aaagtagaac       300
     attcgtacaa gtctgtcatt catttcgaat agcttgttcg attataaagt gaatttaaag       360
     taagattttc ttctaaattg aattcaataa tagtgaattg aagtgattgt tttggtgtgg       420
     aaagaaaatt cttcaaaatg gagaattact atatgaatgc ggatgattta aatgacgaag       480
     aagtggccta tgagctgaaa ttgcggaatt cggccatcgg tcgcagcaca gataatcgtc       540
     gtgtccttcg ctatttgatt cgtcgtgagg aaaaccagga gtttccaacg tcgaacacca       600
     tcaacgacga atacgtaacc gttgctgcag ctgtgaagca gattgaagat tctctgctgg       660
     ctggcagacc gattgggtgt cgatctaggc tgattcacca ctatcggcgt cttcgtagat       720
     gccacgcgac tacagcgtct ggagagcaga ctcgtctggc gctgatgaaa tttgtttttg       780
     gattagcagg acgttatttt cagctcgatt tgaaccggct aggagctgtt tcgaatgccg       840
     gagtttcttc ggagccaacc ggagtagtct cgcctccgaa tcagagtgtg ggtggtcaga       900
     tgcggctagc tacacccccg atggttaatc cagagatgca atcttcagct gaaggagctg       960
     ttggcggcga aactcgcaac gacgcggttg aagatccact ccagatgtca gagaatgttt      1020
     tgaatccgtt cattgtcgaa aatcgccatt cgttggacag ccgtttccca gccccaggga      1080
     atctgcagag tgaaatgcag caagcttcgc tcggtagaat gtccgctgaa ggaaatcctc      1140
     tgccttttcg taatgttcga ttccgttccg gagaagattt gtcatgcttg aatcctccta      1200
     gacagaattt gtcatcggtt gacccagaag cctctggagg tagtgttcct cagcccctta      1260
     atgtgattgg ctttaatgaa gaaaggaact ctgttgcagg aaccgttccg aaaccttctc      1320
     gtggatcacg aactgatttt tggtcaatgg gacctccggt atcccaaggg gaaccatctt      1380
     ccaacccaca agagggccaa tatcgtcctt ggttagatga aagagttcgc caaccctcta      1440
     atgctggaaa ttcagtacca gagccacgag aaaccgtttc tgttcaacct gcaaatacaa      1500
     acgcgaatca gcaactgaat cttagggagt acgtgcatat ttccgaaata gaaaattacg      1560
     tacaatcatg cgtgagaact ttgttgaatg aacgatcaga tcgtccattg gtgcgtgaga      1620
     ctgttgtaaa taacgtgagt gaacagtttg ctaattttgg aataagttct acaggcgaac      1680
     gtaacgaaag tgtgccgaga ttatcgccac cattacagtt acagaacgcc ccaggacctc      1740
     aatcctcgag taacaatatt ccgtttactc ctttgctagg aatcggcaca gaaagaaatt      1800
     caatgccatt ccagtctcag cttaactcga ctcagatgcc tcaatttgca gggaataccc      1860
     agagtccgat acaatttccg gcctcgttgt cttcaggaaa taacggtaca ttaggacagc      1920
     gaagattgcc acaccagacc tgcaatatta ttgaaaagtg gcctaagttt gcaggagact      1980
     caaatccggt cccggtgatc gactttttga gacagattga tctcctttgt cgttcgtacc      2040
     aagtgagcaa ggaagaattg cgaacacacg ctcacctcct gttccgagat gatgcgtacg      2100
     tttggtatac agcttatgaa cccaagttta actcgtggga taccttgctg tactacttgc      2160
     aaatgaggta cgacaatcca aatcgcgaca ggtttataaa ggaagaaatg cgcaatagaa      2220
     aacaacgccc taacgaatta tttagcgctt tccttaccga tatggagact atggcacagc      2280
     gcttgatcaa accattgacg gaaggagaaa aatttgagct cattattgaa aatatgaaac      2340
     tttcttacaa aagaagactt gctttggaaa agatttactc cgttgaacac ttggctcagc      2400
     tttgctacaa attcgatacc ttggaaggga ctttgtatgg ccaacgtgtc caaacaaaac      2460
     ctcatctggt aaacgaagtt cttcttgagg aagaggacga gtttgtggtt caagctgatg      2520
     atgaagaaga aatagctgtt ctccaagcgg agaaggtaac ttcaaacaaa gctcgtctat      2580
     ctccagctga taatgctcga agctctttca acaatggcca acgacaacct ttgtgctgga      2640
     attgtaggaa ggttggtcat atttggaagg agtgtgaccg ccagaagaca attttttgcc      2700
     atgtttgcgg gcatccggac actacggctt tccggtgtcc tcaacagcac aatattcgac      2760
     cattatctga ggtgaaatca aaaaacggtt aggtaaagag ggatttgggg acccctatct      2820
     gagccttaac gatcagaggt ctccaacagt atgttcgaat acttcaatac cacgtatacc      2880
     atccatacac agtttaatcg ttgtcccaca cttatagtaa atgttttggg catagaagtt      2940
     gaaggtcttg ttgacactgg agctagtgtg acaatcatga gctcgcagaa attaatagac      3000
     cgtctcggac ttaagaatct gccgtgtcgt cttaaggttt cgaccgctga tcgaacttca      3060
     tatagctgcc tgggatatgt caatattccg gtcgagttta agaaaatcac aaggattatt      3120
     cctaccgtga tcgtaccgga agtttgcaaa acattgattc tcggaatcga tttcctgtaa      3180
     gcattcaact ttcagtttac gattaacccg aatcaaaggc aaatggttcc agatcagtct      3240
     gagaatcacg ccctattact ggcagaaagt tattttagtg aagatgaagg aaaagtcttt      3300
     tttcgttagg tccctgatct tgacaccaat caatgtctag atccgaagga agacgatcat      3360
     tcattggaga tgccaacagt cgaactgcca tcaaatccaa caaaaacctc gaaggatatc      3420
     gttactgaac atgaattgtg cactgagcag agagttctct tatttaaggc tatccaggag      3480
     cttcctgcga cacgttaagg caacttagga agaaataatc tcataaaaca ttcgatagat      3540
     ttgattgtag gcgcgacccc caagaaaata ccactttata agtggtcacc gactgtagaa      3600
     aaggtgatcg atgaagaaat ggagcgatta cgtaggcttg acgtaattga agaatgtctg      3660
     acctccgcag acttcttaaa tccgttattg cctattagga aacccaacgg aaagtggaga      3720
     atatgtctgg actcgcgacg attgaattct gtcacgaaga aasatgagtt tcccatacca      3780
     aacatgtctc agatcttgca tmgtatcagt aaagctcgat acttctcagt catcgatttg      3840
     accgagtcgt attatcaagt tgagctggac gaaaatgcca aaagaagaac tgcctttagg      3900
     accaacaaag gcctcttcag gttcgaggtt atgccttttg gcttaatcaa cgccccagcg      3960
     acgatgtcta ggctcatgac ccaagttatt ggccatgatt tggagccatt cgtgtatgta      4020
     tacttggatg acatcatcat agcagctgag acttttgaag aacatgtacg actcataaga      4080
     tgtgttgccg aaaggttacg aaacgcgggt ttgaccatta accttacaaa atccaaattc      4140
     tgtcaaacca gcatacgata tttggggtac gtcatctctg aagccggatt atcgacggat      4200
     gttgcaaagg tacaaccaat cctcgattat cctgcgccta ggtcggttaa agaagttcgt      4260
     cgtctactag gtcctgcagg tttctatcag aaatgtatcg gcaaatactc ggaaatcacg      4320
     actccattga ccaacctgtt taagaaggga cgtgaaaagt ttgaatggac tgctgaagcg      4380
     gatgaagctc tcaacaagct gaaagaagcg ttggtatctg ctcctgcgtt agcaaatcca      4440
     gacttctcag agcaattcat catcgaaact gatagttccg accttgcggt tggtgcagtt      4500
     ttggtgcaat tgcagaaagg tgagaggaaa tgcatgctta cttttccaaa aagttatcca      4560
     gcacacaacg tcggtacagt gcaaccgaaa gggaatgcct ggccgtacta ttaagtattg      4620
     agcacttccg acattttgtc gaagggagtc gctttattgt gcaaacagat gcaatgagac      4680
     ttactttcct ccagaccatg tctaacgagt ctcggagtcc gcgtacctct cggtgggctt      4740
     tgaagttatc aaagtatgac attgagctgc gatataaaaa agggctgcga caacatccca      4800
     gctgactgca tcagcagaag catctacact gtgcacattc atctctccga tccatacatt      4860
     gatggactca agtatcagat tgagcataat ccacagaaac atcccgacta tgaagtagtc      4920
     aacgggaccg tctttaagtt tattgctaat tccaccctga ttgaagaccc tgcccatcga      4980
     tggaagcaag tagtgccagg acctgatcga cgagatatta ttaaagaagt tcactgtgaa      5040
     gcccagctcg gtttcctgaa aacactgacc aagattcgag aacgctactt ttggccaagt      5100
     atggctagcg acactaaacg gtactgctcc agttgcaaag tgtgtaagga gtcaaaagtg      5160
     cccaaccaaa acgttcaact ctcatgtggt aaacttaaag tgtgttccag accctgggag      5220
     ataatctcca gggattttct tgggccatgc cctcggtcac gcgaaggaaa tatgtggatt      5280
     cagatcatct gcgatttctt ttcaaaattc gtattggcac agtatatgaa gacatccact      5340
     gcacctttgg tgtgcactgt aatggagaac ctagtcttca atctcttcgg tgcaccgtca      5400
     atttgtataa ccgacaacgc taaggtcttc gtttcggacc cctttaagaa gttgttgaag      5460
     gagtacggag ttactcaatg gaatctagct gtctatcacc cggcccctaa tccagccgaa      5520
     agagtwaatc gagtgatagt cactgcaatc cgctgtgcwt tgaacaaaca agccgatcat      5580
     aaaaactggg atgactcggt gcaaacgata gctcgtgcca ttcggactag tgtgcatgaa      5640
     agcactggac atacacccta tttcgtgaac ttcggacgtg acatgatcag tcacggccaa      5700
     gaatacgaaa atcttcaaga actcggggat ggacaggact acgatgccac aaaacgaaaa      5760
     gaagagctta cgaaactcta cgaactagtt cgctctaatc tctataaggc ctaccagaag      5820
     tattcgcgac cttacaatct tcgatcgaac caaaaacata cgttcaagaa aggcgacatc      5880
     gtatataaac gtaatgttca cctttctgac aaaagtgcca attttgtggg caaatttgga      5940
     tcgaaattca ctaaggcacg aattaaggga gtgctcggta ccaacactta catccttgaa      6000
     tcggaggatg gacaccgtat acccggcact ttccacggtt cgttcctcaa acgagcataa      6060
     aaaggtcaag ctatgactgc actacggccg cgtagtgcat acaccagtca aaataacaaa      6120
     aatacactta tgtggtgcaa cgttagtccg atccgagatg tcctcgtgtt tcctcgatcg      6180
     ttgacaaaat cttgagctta tgttaccgaa taaaacccag ctatgactgt gtccttaaac      6240
     cggaggcaca gcaacaatcc tttccactaa aatactcctg aaggtgctac ggagctccaa      6300
     cgttcgagat gtcacatcag ctgtttcctc acgttgtcga gaaatgattt cgctcagtat      6360
     agtgctctga tgcagctatt atcattgata gctagcatag aatagggcak aattttaatt      6420
     ggaaaattca cacatccaac ttccatcatg cgcgatgacg caggagaagc gaagttgaga      6480
     atgcgtacat ggatcagcag aaaaatcgtc aaaacactcg taaagtaact cagttctgca      6540
     tatcttccat agtaatatta aatcccactt caatttgctt aattttagac ctaaaataga      6600
     gtttgtaacg ttgttaaaat attaaaattt tagcataaat tacctttcgg atcaataatt      6660
     tcgttcgttg tttgttttgt tttagtgagt tttgacagtt gtacgttgtt tcgtcattgg      6720
     taaccagtgt tcagatgtgt agtagtatta gtgttaggtc atttcggata tgctgtaagt      6780
     tagttcaata gggttataaa atcaataatt tgcgattttg tttgcagtat tcggttagat      6840
     ttagtttcag tagcttatca gattagttct gatgtttatc ggtgtatgaa atcggttcga      6900
     ttaattttca agtatgttga agcaaatcgg accgacattc ggaaatcttt ctcagttatt      6960
     actgaggtga tcggataatt aggttagaaa tttgtatcag attcggtctg atgtaatcgg      7020
     aaaattggtt tagtttagga aattaggata ttggtttcag attattctga agtattcggt      7080
     tagcttagtt tcggaaatac gtaggtaata gaagaatatt cagatcattg gttaaattgt      7140
     ttgtttgtta atttgaagat aagccttctt ttcttataaa aattttgaaa tttctttaaa      7200
     tttcaaaatt tttatttatt tagtgggggc gataa                                 7235
//
ID   Gypsy-143_AA-LTR repbase;    DNA;    INV; 1684 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-143_AA_;
KW   Gypsy-143_AA-I; Gypsy-143_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1684
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1020-1020 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1684 BP; 478 A; 295 C; 364 G; 546 T; 1 other;
     tgtaacgtca tttagaaccc tattcgtagt tttcgttctc attgataaaa tttgtttgta        60
     tttgttatgt atactagagt tcgtcgtgaa tgtcgcaaac tgacagcata gcttcaagtt       120
     tagtccgaac accaaccaaa caagacgcca cctatgttca ttgaaagaac taaagaaata       180
     tttcggaaat tcaaatctat tgcgtcttag agaattgacc agaatttctc tcgtcgctcc       240
     tactaaattg cgccgatggg ctaatatgaa aattcccaaa ttagccaatt aaaagaaaac       300
     aaaagatagt acaaccattg tacgcattcg ggtggaaatt gcgttcttct aaattagctc       360
     aacccttttt taagtctgga tcgcgattgt tcatttatta tagtggagtg cgtcaaagcg       420
     ataagatcgt tattagtcgg agtgattttg aaagtgtttg agtttaactt aagtctaatt       480
     gtgactttgt attttggttt aaactaaact cgaagtaagt ttcgggagtt ttagatttac       540
     ttagtgtatt aatttcagtt tatgtgtctt ttatgttcat cgtttagaat tttgaatttg       600
     tcgagtcgaa ttgtaatatt ttgaaaaagt gcctgagata ttgtgagatt tggtgaataa       660
     gaattcaggt aagcctaact tgattattta gtgagcaaat taagtgagaa tccgcgttga       720
     ataggccctc cttgcccaat caacgtgggc ggctaatctg ggctagtacm aatcggaagc       780
     cctccctcgg atacggctgg gactacaatc ggccgccacc aagaggctgt aagttcccga       840
     gaacggcacc ggtccctgaa attgctgtgc aacatcggct accaacgctc gtgtgacatt       900
     tcgctcgcca ataagtcgtc cggcgtgagc accgttccta taaaaagctc ttcactccac       960
     tacaagggga cgcctttacc ccttatgcga cgccgacgcg cgaatcacat gttggcttta      1020
     ccggtcgatg gagtaagttt gacccacagc aattggtgag tacgtacgtg aagttttgca      1080
     atcggtaaac cgcatgggac aaccgacgag ggattgtcgc cgagaagaaa aggtcagatc      1140
     tgacaataga aaataagaat ttgctcaaag ataaaatcaa aattgaatta aatcgtgacg      1200
     tcacagtagg gattaggctt gtttgaattt aaataaataa ttactcgtta aatttaaggc      1260
     aatcgatttg aactcgataa atttgaattt ttatcaaata aagtaacttc ggattgaatt      1320
     tttgatttaa ataaacttac ttctagatta gttagattac tccactagtt ttattacgtc      1380
     acgaattggt atttggctag atttaagatt ggtgtttggg ttcttttagt gaataagcat      1440
     ttcccccatt ggttaatttc tgaatttatt tttcggtttc ggtatttttt atgattttgg      1500
     aattggttct ggttagtttt tggagacgtt tgggttgttt tagtgcgaca tcggttctca      1560
     tttactaggt gacctgccct gagagggtag tttcatgccg ggtaattaga aagagctaac      1620
     ggtccttctt attggaaggt ggcgcgtaag ccgtttgctt agcgtaacag aacggaacgt      1680
     taca                                                                   1684
//
ID   Gypsy-144_AA-I repbase;    DNA;    INV; 6528 BP.
XX
AC   AAGE02024568;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-144_AA_;
KW   Gypsy-144_AA-LTR; Gypsy-144_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6528
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024568; Positions   35202   28675.
XX
CC   'AAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           901..2556
FT                 /product="Gypsy-144_AA-I_1p"
FT                 /translation="MLNETACGNDLGVTEGEASGGVMPTLEVKRKIMEKSV
FT                 QRSKEILDRLSDYEKGKEENLGDLVKHFKDFVIATTKQEEERRKREIEVEE
FT                 KRMKQAAEGIERKKRLEKLLIDLNEKIRIEPTVVPKQESNPNPLRKEREIS
FT                 DKSKVDFKTKQGLLKSESDDQFETPSGSSDERPQLKSKFKKSNRDGRLSPN
FT                 RMLRNRPKKLSISSEFSDESYESSWSWYSSPDSSADSGKSRRIQERDRREI
FT                 RQRNKREHQRPLKRIPMSEWRIKYDGKDGGRKLSEFLKEVKMRRRAESISD
FT                 RELFRGAIHLFSGRAKDWFIEGMENRDFRNWSELKSDLKREFLPPDLDFQL
FT                 EIQATNRRQARGEKFVDYLHDMLKIFQSMTRPLHEKRKFEIIWRNMRFDYK
FT                 NAMTGAGIRSISKLKRYGRIVDENNWSIFQKSLDNVSKPCSSQLNEISTES
FT                 KSKASKPKDKSKQTQQGANREHQVEEKAQPKTKELPPPMEGTSQGTLQELA
FT                 SHYKRPPIGTCYNCRQRGHHYPECEEPKRKFCRMCGFSGVLTKTCPACPKN
FT                 SESSA"
FT   CDS           2817..5735
FT                 /product="Gypsy-144_AA-I_2p"
FT                 /translation="MFQSSTLVKTASGTPIQIKGYVNLPITFNGETHIVAA
FT                 LIAPEVRHRLILGYEDFWRVFNLEPSVQNQRVSYEANSHDSDIEVDEMDNN
FT                 LLTQDQFERLEEIKGMFKVAVEGERLDITHVISHKIELKEEYENSPPVRIN
FT                 PYPTSPELQAKINRELDKMLAQQVIERSKSDWSLSTVPVLKPTGEVRLCLD
FT                 ARRLNDRTKRDAYPLPHQDRILSRLGPCRYLTTIDLSKAFLQIPLDPHSRK
FT                 YTAFSVLGRGLFQFTRLPFGLVNSPATLARLMDEVLGFGELEPNVFVYLDD
FT                 IVVVSNTFEAHIESLREVARRLRNANLSINIDKSKFCVEKLPYLGYIISRE
FT                 GLSPNPERIEAIINYERPKSIRALRRFLGMANYYRRFISNFSELTAPLTNL
FT                 LRNKPKSIRWSDVAEHAFNGIKERLISAPVLSNPNFNMPFVIQTDASDSAI
FT                 AAILTQEHEDGERVVAYFSQKLSPAQQNYAASEKEGLAVLSAIDKFRPYIE
FT                 GTHFVVVTDASALTHIMNGKWRSSSRLCRWSIDLQGFDMEIRHRRGRDNVI
FT                 PDALSRAVELVEVDLDAQTDTWYFPTYNSVRDSPDDHLDYRIENDKLYKYV
FT                 PNKTDTLDYKYEWKQCIPDSSREKLTREEHERNLHIGYEKLLERMRQKFYW
FT                 PRMATTVRRIVERCLVCRECKPSTTSQHPEMGKQRLTSKPFQIMAVDFIQS
FT                 LPRSRAGNCHLFVILDIYSKWTMLVPVRKISTELVIKTLEELWFRRYSVPE
FT                 ILISDNASTFLSKKFKEFLDRYRVVHWTNARHHSQANPVERLNRSIETCIR
FT                 TYVRSDQRAWDTKISDVEYTINNTIHSSTGFTPYRILFGHEIVASGDDHRL
FT                 DVVTSEPSESERIGRKVLVDRTIQELVVKNLKKAHEKSSKTYNLRFRKPAP
FT                 CYSVGQKVYRRNFALSSAGDAFNAKLGSAYIPCTIVAKRGTNSYELAGEAG
FT                 KHLGVFSASDLKPGIPEN"
XX
SQ   Sequence 6528 BP; 2104 A; 1236 C; 1507 G; 1681 T; 0 other;
     attggcgccc aacttgaaaa gacaacgctg atcagatcgc aaacaactaa taaaaacgga        60
     gtcagttagg gatcaaggtc agggttcact caaattgctt tgtatggtgc tatagacggt       120
     gaattattaa cgtgattgat acgataccta ctctctcgcc acaatttgat gatacttgta       180
     ctgcttacta gtgcgcgtac cctctcaaaa gcgaagattt attgttgatg gtcaaccaaa       240
     tatcgggaat attgctttac atcatattgc gattcaattg gtttaatggg tcttgattct       300
     tccatgtcat agaaacacgt gaataagtag taacagattc aatatccaat tagattctgg       360
     tggaactacg ttagccttag agtatggatt tacaaagctt gtataggaat ttggaagtat       420
     ctcacctctc agttgacgag gttgagcatg agttgttgat acgaaacatt ctgtttgact       480
     tggatgagca tgagagtaag aagagaagaa aactaaaaga tcgaatgcgc gaagaacgtg       540
     agttacaatc cgttgtgctc tcagtgactt ggagagacac ggttgaggag atgacaatca       600
     tcaattcgaa actcctgata atcgagggat tgctagccag ccctaagtgt gatatacggc       660
     atagagaaaa attgagaact cgccatatcc actacagagt aagaattttt ttcacttttc       720
     cgtgctcctc aggctcgtaa gcatcaggcc gaggtaacac aactaggtag aaaagtttca       780
     gaaatagttg ataaatactt tcccgagtgt gcctctgttg ctggtgatgg ccacaataca       840
     ccagagaagc tggaacaaga tttgagtctt gcaatcgaag atgtgcgtag cgagttagaa       900
     atgttgaacg aaaccgcttg tggaaatgat cttggagtga cagaaggaga ggcaagcggt       960
     ggagtgatgc ccactttaga ggttaaacga aaaattatgg aaaaatcagt gcagaggtca      1020
     aaagaaattt tggataggct gtctgattat gagaagggaa aagaagaaaa tttgggagat      1080
     ttggttaaac attttaagga ttttgtgatt gctacaacaa agcaagagga ggagaggagg      1140
     aaaagggaga tagaggtaga ggaaaagcgg atgaaacagg ctgctgaagg catagagagg      1200
     aagaagagat tggagaaact tctgattgat ttaaacgaga aaattagaat tgagcctaca      1260
     gtagttccca aacaggaaag caatccaaat ccattgcgaa aggaaagaga aatatcggac      1320
     aagagtaagg ttgatttcaa aacaaaacag ggattgctga aatccgaatc ggatgatcag      1380
     tttgaaactc cgtctggaag ttccgacgaa cggccccagc ttaaatccaa atttaaaaag      1440
     agcaacagag atggtcgttt atcaccaaat cgcatgctca gaaaccgacc aaagaaactg      1500
     agtatttcct cagagttctc agacgagtcc tacgagagct cttggtcttg gtactcaagc      1560
     cctgacagct cagcggattc aggcaaatct cggagaattc aggaacgaga tagaagagaa      1620
     attaggcaga gaaataagag ggagcatcaa agaccgttga aacgaatccc gatgtccgaa      1680
     tggagaataa aatatgatgg gaaggacggt ggtagaaagt tgtcagaatt tttaaaagaa      1740
     gtaaagatga gacgtagggc tgagagcatt tcggatcgcg aactttttcg aggtgcgatt      1800
     catctttttt ctggaagagc caaggattgg tttattgagg gcatggaaaa ccgagatttc      1860
     agaaactgga gtgaactgaa gtccgattta aaaagagaat tccttccgcc agatctcgac      1920
     tttcagctcg agatacaggc aacaaatcgt cgacaagctc gtggagagaa atttgttgac      1980
     tatcttcacg acatgttgaa aatttttcag tcaatgactc gaccattaca cgaaaaacga      2040
     aaatttgaaa tcatttggag gaatatgcga tttgattaca agaacgccat gactggtgct      2100
     ggaatcagat caatttcaaa attgaaaaga tatgggagga ttgtcgacga aaacaactgg      2160
     agcatttttc aaaaatcgct cgataatgta agcaagcctt gttctagcca gttgaatgaa      2220
     atttcgactg aaagtaaatc aaaagcttct aaaccgaagg ataaatcaaa acagacacaa      2280
     caaggagcta atcgcgagca tcaggttgaa gaaaaagctc agccaaaaac aaaagaattg      2340
     cctccgccga tggagggtac ttcacaaggg acattgcaag aactggctag ccactataaa      2400
     cgtccaccaa ttggtacgtg ttacaattgc cgacaacggg ggcatcacta ccccgagtgt      2460
     gaagaaccca agagaaaatt ttgtcgcatg tgtggcttct cgggcgttct cacaaaaact      2520
     tgtccggctt gtccaaaaaa ctcagagagc tcagcttgag ggaggaagct gaagtcaact      2580
     ctccacaaac tcccactgtc aaaaatttaa aagagtatgt gttcgagttc ctggatgatg      2640
     atgattacga atctgattcc attgacgaac tattaatcca cctagaagga gatgcccgcc      2700
     cttttgtgga agttgaaatt ctcaacaaaa aattggttgg attgttggat agtggtgctc      2760
     aaaggacggt tctgggcaag ggatccgaag atcttattaa aaatttgaaa ctgaaaatgt      2820
     ttcaatcatc gaccttagtt aaaacagcct ctggaactcc aattcaaatc aaaggttacg      2880
     tgaacttacc aattacgttt aatggagaga ctcatattgt cgctgctttg attgcaccag      2940
     aagtacgcca tagactgata ctgggatatg aggacttttg gcgcgtgttc aatctcgagc      3000
     catcagtaca aaaccagaga gtgagttacg aagcgaactc tcatgatagc gatattgagg      3060
     tggacgaaat ggacaacaat ttgttgaccc aggatcagtt tgaaaggttg gaggaaatca      3120
     agggaatgtt caaggttgct gtggaaggag aaaggctcga tatcactcat gtaatatctc      3180
     acaaaataga gttgaaagag gaatacgaaa attctcctcc tgtaagaatc aacccttacc      3240
     caacgtcgcc agaacttcag gctaaaatta atagagagtt agacaaaatg ttggcacaac      3300
     aggtaatcga acgtagtaag agtgactggt cgctaagtac agtgccggtt ttgaagccaa      3360
     cgggtgaagt gcgcctgtgc ttagatgcac gacgattaaa tgatcggact aagcgtgatg      3420
     cttaccctct accccaccag gaccgtatac ttagcagatt gggaccatgt cggtatttga      3480
     caacgatcga cttatctaag gctttcctgc aaataccact ggatccccat tcacgcaagt      3540
     atacggcctt ctcggtattg ggaagaggac tttttcaatt taccagactt ccctttggac      3600
     ttgtcaacag ccccgcaaca ctcgctcgac tgatggatga agtgttgggt ttcggcgaat      3660
     tagagcccaa tgtattcgtc tatctcgacg acattgtcgt cgtcagcaat acatttgagg      3720
     cccacattga gagtcttcgg gaggttgcga ggcggcttcg taatgcgaac ctgtctatta      3780
     acatagacaa atcgaagttc tgtgtagaaa aactccctta tctgggttat attatctcac      3840
     gagagggact gagtcccaat cccgagagaa tagaggccat tataaattac gagcggccta      3900
     aatcgattcg ggccttgcgg cgtttcttag gcatggccaa ttattataga agatttattt      3960
     caaattttag tgagttgacg gcacctctca ccaatcttct acggaataaa cccaaatcga      4020
     taaggtggtc agacgtagcc gagcatgcat ttaatggcat caaggaacgt ttaatttcag      4080
     cccctgtttt atcgaatccc aatttcaata tgccatttgt cattcaaaca gatgcctcag      4140
     atagtgcaat tgcagctatc ctcactcaag aacatgagga tggggaacgg gtggtagcat      4200
     acttctctca gaagttgtca cccgctcagc aaaattatgc agcgtctgag aaggaaggtc      4260
     tggctgttct gtcagcaata gacaaattta gaccatacat tgagggaact cattttgtcg      4320
     tcgtcacaga tgcgtcagca ttaactcaca taatgaatgg caaatggcga tcgtcgtcga      4380
     gattatgtcg ttggagtatt gatctgcaag gattcgacat ggagattcgt cataggcgtg      4440
     ggagagacaa tgtgatccca gatgcactct ctcgggcggt cgagctggtc gaagtggatc      4500
     tggatgctca aacggacaca tggtactttc caacttacaa ctcggtacga gattctccag      4560
     atgatcatct agattatcgc atagagaacg ataagttata taagtacgtt cccaacaaaa      4620
     ctgatactct ggactacaaa tacgagtgga aacagtgcat ccccgattct agtcgagaga      4680
     aattaacgcg cgaagagcat gagcgtaatc tgcacatcgg ctatgaaaaa ctgttagaaa      4740
     ggatgaggca aaaattttat tggccaagaa tggctaccac tgtacgtagg atcgtggagc      4800
     gttgtttggt ttgcagagag tgcaaacctt cgactacttc ccaacatcca gaaatgggta      4860
     aacaaaggct tacctccaaa ccattccaaa ttatggctgt ggacttcata cagtcgttgc      4920
     cacgaagtcg agcgggaaat tgtcaccttt tcgttatact cgacatttac tctaaatgga      4980
     caatgctagt gcccgtgaga aaaatttcca ctgaacttgt catcaaaaca ttggaagagc      5040
     tatggtttcg ccgctattca gtaccagaaa tactaattag cgataatgcg agcacctttt      5100
     tgagcaaaaa attcaaggaa tttctcgatc gctaccgagt tgtccactgg acaaatgcca      5160
     ggcatcacag ccaggccaac ccggtagaaa gattgaatcg aagcatcgaa acatgcattc      5220
     gtacgtatgt gcgctcagat cagagagcat gggatacgaa gatctccgac gttgaatata      5280
     caattaataa caccatccat tcatctacgg ggttcactcc gtacagaatc ctcttcggtc      5340
     atgagatagt agctagcggc gacgatcatc gtttggatgt agtaactagt gaaccctcag      5400
     aatcagaacg aataggtcga aaagtcctgg tagacagaac aatccaagaa ttggtggtga      5460
     aaaatttaaa aaaagcccac gagaaaagtt caaaaaccta taatttaagg tttcggaagc      5520
     ccgcaccctg ctacagtgta gggcagaaag tttatagaag aaattttgca ctgtcttccg      5580
     cgggggatgc gttcaatgca aaattgggat cggcatatat tccgtgtact attgtggcta      5640
     aaagaggcac aaattcttat gagcttgcgg gcgaggcggg aaaacatctg ggtgttttct      5700
     cagcttcgga tttgaaaccg ggaattccgg aaaactaaaa gaactttgca aatataggta      5760
     tgcaggaagc ttaattaagt actcagatta atttgtacag ttgagagttt atttgtctaa      5820
     gtcaaagtca gagtcaaggt taaagtccaa gtctgtgtga atccaatgaa gtcagatgtg      5880
     tctgtgtttg tactggtcca tagttactca tcgtcataca caagagtgtc aaatttcaaa      5940
     ttgtaatagc acattcgaac aaaattggta caagatttca caactgttgc atgaaatgtt      6000
     cctaatgatg cgtagcaggt ctttttttga aacgtttctc ctgcgttaca attagaaaaa      6060
     tgtcctcaag tacacaaaaa aaaaaaaaaa tcagtcaatc ggttttgctc ggcgtttgtc      6120
     gttacgagta cagaatttca cttttactgt atccatcacc atattttctt cacaccagtt      6180
     acctctcacg gcgaaacaca tttgaagaat aacttcatcg gatagaattc acacgaaaaa      6240
     tgtcgaagag aaagatcaat tctcacactc aacaccgaga gtgttaagat gtctgggaga      6300
     gatgagatct gttaaaatca atattggttt agcgtcgata aataatcttt catggatcta      6360
     atggaagaaa ttatttggtt gatcaacgca taaatgttcc ctattgcgaa agatttcgta      6420
     agcatgtaaa gttgcgtctc aaacctgggt ggtactagat gtatcaaaat actggtttaa      6480
     taaattaata acataattat taatttattt agagggagta tggggtag                   6528
//
ID   Gypsy-144_AA-LTR repbase;    DNA;    INV; 1174 BP.
XX
AC   AAGE02024568;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-144_AA_;
KW   Gypsy-144_AA-I; Gypsy-144_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1174
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024568; Positions   28674   27501.
XX
SQ   Sequence 1174 BP; 337 A; 266 C; 255 G; 316 T; 0 other;
     tgttaccatt ttggttcttt gccctatata gcctagcaca gcaaggagag tgagtggcaa        60
     tactactcac catactactg ttcatgatga gtggtaaagc tttgcctgcg aatttatagc       120
     acaaacaagt atatcgtttt tgttcaactt ctctgtgtcc cttataacta ttgaacataa       180
     tttccaatta gaatatttgt acttcattca taagctaact aataagattg caataaaacc       240
     cattaagtat ttgaggtgtt aggagattgt tatgactcca tataagaacg gtcattttga       300
     atcctaggga ataagattgt taaaacactc acatgcacac tttacacgaa aaatgctgaa       360
     ccaaaggaat ggattctgca gtgcctggat atatatgaga tatagttata taggtctgaa       420
     tgggaggtag gaagggcttc acgaatccta tcagcgttct tttccactca agtgctcgaa       480
     ggagtaacat cagcttaagc ctagaaaagt gaacaccaag tgcctttgat taaaaagttc       540
     caagtggaaa ataagaacaa ctcttagtgg gatttagtgg agaatcaggt atgttaccct       600
     gcctaggagc cattctcgtg accctattct aagcccagtt tatacggctt aacaggaccc       660
     attaggtgtt gaccacgcat tggtttaagc tccaagcaag tgcggagcgg cgtgttcccc       720
     ggttagtcat ccgccgttgt gagaatctca agctcttcct ccagtgacca gaagcgacta       780
     ttgagccacg acctggccgt ttggtttagg gtaggcaatc tgtaaaacca ccagcgttcc       840
     tcaaagccgc cacacgtgac gagcacgtgt ccatccattg gtccagctaa gccggccggc       900
     caacgatcat cgcgccttaa cccacacaca cacacatcac acattcatag cgtaagtaaa       960
     atttaaataa aaagtgattg aaagtatagg accgaaagag ttggttttgt gttctgatcc      1020
     gccccgttcc atccgttgtc tagccgaccc tgtgtaaaga ggcgggtgta gcccacccca      1080
     gacgactccc gtggcttgac caggagtcag gggattgcta ggtcaagacc cttcaggtct      1140
     tgacattctg tccaggaatt gttcccaagt aaca                                  1174
//
ID   Gypsy-145_AA-I repbase;    DNA;    INV; 4231 BP.
XX
AC   AAGE02022110;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-145_AA_;
KW   Gypsy-145_AA-LTR; Gypsy-145_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4231
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022110; Positions   85422   81192.
XX
CC   'AAACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..4186
FT                 /product="Gypsy-145_AA-I_1p"
FT                 /translation="MAQPDPPPADPAAQGAQQIAGAPPPNFHFDAFDRRKI
FT                 RWSRWVERLETAFVIYGVGAEELRRKNLLLHLMGPDTYEIACDKVAPQNLR
FT                 DMRYQEIVDVLEGHFNPQPLEISENFRFKCRRQGDKNASSPDETIDEYIVA
FT                 LRRIAVTCNFGGYLETALRNQLVFGLKRNDIRSRLLERDIAVGMELSLKGG
FT                 AEIEGAFAKQEVHSLQHPPGKPKPKKLGGKSASEMHCFRCGDKSHLAKKCR
FT                 HQHTECSFCKIRGHLERVCMKKAAAAKGDANRKGAKSGAAKTNYIELRNDS
FT                 GGSAAATGGEVEVGEICTVDSRSLEAKLWLPVKVCGVEVRFEVDTGSPVSI
FT                 INSQYYGKYFRGMKLHTSDVSLVSYCNTDINVKGVFKAAVEWNGTESMLPL
FT                 YVVESGKHPLLGREWLKVLAIDWNSVLRKPAAVNTINPTTTTSAALSQLFQ
FT                 TYGKVFEDSIGRISSVQAHLTLKPNAAPVFLKARKVPFNLMKAVEDELDKL
FT                 VSEGVLTKVDNSNWATPIVPVKKSDNRVRICGDYKQTVNPNLKVDRHPLPT
FT                 VDELFASLAGGEKFSKIDLVQAYLQLEVAPEDREILTLNTHRGLYRPNRLM
FT                 YGLSSAPAIWQRQIEVILQGIEGVTVFLDDIKITGPTEEIHLARLEEVLRR
FT                 LHRYNIRVNKQKCVFFADRIEYCGYLLDREGVHKVKKKMDAVQDMPRPRNK
FT                 EEVRSFVGFINYYGRFFDNLSSLIYPLNNLLKDSVEFRWTKECERSFNAVK
FT                 QQMQSERCLVHYSPELPLVLATDASPYGVGAVLSHVYPDGSERPIQFASQT
FT                 LNRTQQKYMQVDKEAYAIIFGVKKFFQFLYGRRFLLVTDNHAITKIFNEQK
FT                 GLPVMSALRMQHYATFLQSFDYEVRFRKSADHANADAMSRCPLTKADPDNV
FT                 VEESDVVEMNQIDTLPVTAEELSQATSEDKVVKKLMQGLRHGQAVDGKDRF
FT                 GIEQSEFAIQNGCLLRGIRVYVPRTLRERVLKELHSTHFGMTRTKSLARGF
FT                 CWWMGIDHDIEIMISNCADCQSVRPEPVKVLPHPWEPATEPFQRVHADFAG
FT                 PFLDSYFFIVVDAYTKWPEIVVCKSITADSTERMCREIFSRFGIPAVFVSD
FT                 HGTQFTAESFQSFLKQNGITHKMGAPYHPATNGQAERYVQTFKQKLKALHC
FT                 SKSKLDVELANILMTYRKMIHPSTGQSPSMMMFGRQLKSRLDLMLPKNPER
FT                 RPANPVARVFSDGDRVRVRDFLTANKWQFGRVVAKLGKLRYSVRLDDGRLW
FT                 ERHVDHMAGVGSKLAISGEIELPTMVEARAEHNHEFPELVPPVVTTTDRGG
FT                 DRNVQTTAEAAGGPPVAGTSTPTRLTVTPPVQPLANGGQRPQAVVSEDVVQ
FT                 PRQVHGRNDQPMRRSSRVVKPPQRLNL"
XX
SQ   Sequence 4231 BP; 1111 A; 979 C; 1166 G; 975 T; 0 other;
     gttttggccg acgaggatgg cgcaaccaga tccaccacca gccgatccag ctgctcaggg        60
     tgctcagcaa atcgcgggag ctccgccacc gaactttcat ttcgacgcat tcgacagaag       120
     gaagattcga tggtcgcgat gggtggagag gttagaaacg gcgtttgtga tttacggcgt       180
     cggagcggaa gaattgcgtc gcaaaaactt gctgctacat ttgatgggcc ccgacacgta       240
     cgaaattgct tgcgacaagg tggctccaca gaatcttcga gacatgcggt accaggagat       300
     tgtcgatgtg ctagaggggc atttcaaccc acaacccctc gaaattagtg agaactttag       360
     gttcaagtgc cgtcggcagg gggacaagaa cgccagttcc ccggacgaga caatcgacga       420
     gtacatcgtt gcgctgcgca ggattgccgt aacctgcaac ttcggaggat acctggagac       480
     tgcattgagg aatcaactag tcttcgggtt gaaacggaac gacattcgca gccgcctgct       540
     ggaacgggac attgcggttg ggatggagtt gtcgctcaaa ggaggagctg aaatcgaagg       600
     tgcttttgcg aaacaggagg tacattccct acaacaccca ccaggtaagc ctaaacctaa       660
     gaaactgggg ggcaagtccg ctagcgaaat gcactgcttt cgctgcggcg acaaatcaca       720
     cctggcgaag aaatgtcggc atcaacacac agagtgctca ttttgcaaaa taagagggca       780
     tcttgagcgc gtatgtatga agaaggctgc tgctgcaaaa ggtgatgcta accgaaaggg       840
     tgcaaaatcg ggtgctgcaa aaacaaatta catcgaactt cgcaacgatt caggtggaag       900
     tgctgctgct actggtgggg aagttgaagt gggggagatt tgtacagtgg attctcgttc       960
     gttagaggcg aaattgtggc tgccggtgaa ggtttgcggt gtcgaggtgc gttttgaggt      1020
     agataccggt agcccagtca gcatcatcaa ctcgcagtac tacggtaaat acttccgcgg      1080
     gatgaagctg catacgagtg acgtcagtct tgtaagctac tgcaatacgg acatcaacgt      1140
     gaagggggtg ttcaaagcag cagtagaatg gaatgggacg gagtcaatgc tgccgctgta      1200
     cgttgttgag tctgggaagc atcctctact gggccgggaa tggttgaagg ttcttgcgat      1260
     cgattggaat tccgttttgc ggaagccggc tgcggtcaac acgatcaatc caactactac      1320
     tacttctgct gcgttgagtc aacttttcca aacctacggg aaggtgtttg aagattcaat      1380
     cggtcggatt tcctctgtgc aggcccatct tacattgaaa ccaaatgcgg ctccggtttt      1440
     tctgaaggct cggaaggttc ccttcaactt aatgaaggca gtcgaggacg aacttgacaa      1500
     attggtgtct gagggagttc tcaccaaggt ggacaacagc aattgggcca cccccatcgt      1560
     tccggtcaaa aagtcggata accgagtcag gatctgcggg gattacaaac agacggtgaa      1620
     ccccaacttg aaggtcgatc ggcatccact tccaacggtc gacgagttgt ttgcttctct      1680
     ggcaggcgga gaaaagtttt caaagatcga tcttgttcag gcgtatttgc agttggaggt      1740
     tgctcctgag gatagagaaa ttctaacgct gaatacgcac cgcggactgt accgtcctaa      1800
     ccggcttatg tacggtcttt catccgctcc tgcaatatgg caacgccaaa tcgaggtcat      1860
     cctacaaggc atcgaaggtg ttaccgtatt cttagatgac attaagataa caggaccgac      1920
     cgaagaaatc catctggcgc gattggagga agtgcttcgt aggctgcatc gctacaatat      1980
     ccgagtcaac aagcagaaat gcgtgttttt cgccgatcgc atcgaatact gcggatacct      2040
     tttggatcgc gaaggtgttc acaaagtgaa gaagaagatg gatgccgtac aggacatgcc      2100
     gcggcctcgg aacaaggagg aggtgcggtc gttcgtagga ttcattaatt attacggccg      2160
     ctttttcgac aatttgagtt ctctgattta tccgttgaat aacttgctga aggattccgt      2220
     cgagttcagg tggacgaagg aatgcgaacg ttccttcaat gccgtcaagc agcaaatgca      2280
     gtcggaaagg tgtttggtcc actactcgcc ggagttgccg ttagtcctag ccaccgatgc      2340
     ctcaccttat ggtgtaggag ccgtcttgag ccacgtctac cctgatggtt ctgaacggcc      2400
     catacagttc gcttcgcaaa ccttgaaccg tacacaacag aaatatatgc aggtagacaa      2460
     agaggcttac gccatcatct ttggcgtcaa aaagttcttc cagtttttgt acgggcggag      2520
     attcctactg gtgacggaca accatgcgat tacgaagatt ttcaacgagc aaaaaggact      2580
     tccggtaatg tctgcattga ggatgcagca ctatgccact ttcctacaat cttttgacta      2640
     cgaagtgagg tttcggaagt ccgcagatca tgcaaatgct gatgcgatgt ccagatgtcc      2700
     actgacgaaa gctgatccag ataacgtagt ggaggagtcg gatgtggtgg aaatgaatca      2760
     gattgacacc cttccggtta ctgcagagga gttgtcgcag gctacatcgg aggacaaagt      2820
     ggtgaagaaa ctgatgcagg gattacggca cggacaggca gtcgacggga aagaccgttt      2880
     tggaatagaa caatcggagt tcgctatcca gaatggctgt ttactgcgag ggatccgtgt      2940
     ctacgtgcca agaacgcttc gagaacgagt actgaaggag ctgcactcta cacatttcgg      3000
     catgacgcgt acaaaatcac ttgcaagagg tttttgctgg tggatgggaa ttgaccacga      3060
     catcgagatt atgatttcga actgcgcgga ttgtcagtcc gtccgccctg agccggtgaa      3120
     ggttctaccg cacccgtggg aaccagcaac cgaaccattc cagcgagttc atgccgattt      3180
     tgccgggccg ttcttagaca gctacttctt catagttgtc gacgcctaca cgaagtggcc      3240
     cgagattgta gtctgcaagt caatcacagc tgacagcacg gagagaatgt gtcgagagat      3300
     cttcagccgc ttcggaattc ctgcggtgtt cgtaagcgat catgggacgc aatttacggc      3360
     tgaatcgttt cagagtttct tgaagcaaaa cgggattaca cacaagatgg gtgcccctta      3420
     ccatcctgcg acaaacggtc aggcggagag atatgttcag acgttcaaac agaaactgaa      3480
     ggctctacac tgttcaaagt cgaagcttga cgtcgaactt gcaaatatcc tgatgacata      3540
     ccgaaagatg attcacccgt caactggaca atcaccgtct atgatgatgt tcggaagaca      3600
     actcaaatcc cgcctagacc tgatgctacc gaagaatcca gagcgaagac cagcaaaccc      3660
     cgtagctcgt gtgttttccg acggagacag agtaagagtt cgtgattttc tgacggcaaa      3720
     caagtggcag ttcggcagag ttgtggcgaa gcttgggaag ctgagatact cggttcgact      3780
     cgatgatgga aggctatggg agcgacacgt tgatcatatg gctggcgtgg gatcgaagct      3840
     agctatatcc ggagaaattg aactgccaac gatggtggaa gctcgagctg aacataacca      3900
     cgagtttcct gaactggttc caccagtcgt tactactact gatcgtggtg gtgaccgcaa      3960
     tgtacaaact accgcagagg ctgccggtgg accgccagtt gctggtacat ctacccctac      4020
     gagactgaca gttaccccgc ctgttcaacc attggcgaac ggtgggcagc gaccacaagc      4080
     cgtggtatcc gaggatgttg tgcaaccgcg ccaggtgcac ggaagaaacg atcaaccgat      4140
     gagaagatct agtagagtag taaaaccccc tcagagattg aatctctaac tattttgcat      4200
     tatataactt tcttttcacg agggggagag t                                     4231
//
ID   Gypsy-145_AA-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   AAGE02022110;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-145_AA_;
KW   Gypsy-145_AA-I; Gypsy-145_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02022110; Positions   81191   81004.
XX
SQ   Sequence 188 BP; 54 A; 44 C; 27 G; 63 T; 0 other;
     tgttatgatt tacttcagtg taggaatcag tgaactacct cacctacata tataaacaca        60
     ttgattcttt gacatttatg tattaccaac ctaaaaccga ttttcattat taaaacgtgt       120
     tcgcaacgag tccgaacggt tcttttattt gctccgcgtc cgatcatctg ttacccgccg       180
     atacaaca                                                                188
//
ID   Gypsy-146_AA-I repbase;    DNA;    INV; 4178 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-146_AA_;
KW   Gypsy-146_AA-LTR; Gypsy-146_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4178
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions 2262804 2258627.
XX
CC   Positions [3343-3807] - Integrase core
CC   'GAATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..3864
FT                 /product="Gypsy-146_AA-I_1p"
FT                 /translation="MAETNGGSASGGQPQPTNMTEAVVHILTNQQALMRQL
FT                 AQQLTATQIAVNNLSRDESVLDSLSSNMAEFTYDKENGHTFDAWFSRYVDL
FT                 FDKDAGKLDDAAKVRLLLRKLSPPDHERYNSFILPKLAREFTFEETVSKLK
FT                 SLFGATVSTFRRRYNCLQTNKDDGDDYLAYSCKVNKACVDFKLSELTEEQF
FT                 KCLIFVCGLKSKQESEIRMRLINKLNESADLTLQQVVEQCNTLVNLKQDTV
FT                 LVEGCSSSVNAIAYPKRTKPKRLASADKSHEQPKTPCWSCGGMHFSKDCRF
FT                 KDHRCNECGKYGHREGYCACFSSKSSNTAASTEKKKKKMRNQPLARTVTIR
FT                 SVGQRRKFVDLQLNNVPLRLQLDTGSDISIISHRSWVKIGRPSAKPAVFCA
FT                 RTASGEPLQLIAELECNITLNGITRGGKCFIASPNVHLDILGIDWMDLFGL
FT                 WNHPIASFCNQITSQPTHQMVALQAQYPEVFTSEMGLCNKTPVKLVLKGNP
FT                 KPVFRPKRPVAYSMEQAVEDELLRLQGLGVLKKVDFSDWAAPIVAVRKPNG
FT                 TVRICADFSTGLNSVLEANHYPLPLPEDIFAKMANCRIFSHIDLSDAYLQV
FT                 EVDPACQPLLTINTHKGLFQFTRLSPGIKSAPGAFQQLMDAMLAGLEYTVG
FT                 YLDDILVGGRNEEEHQRNLQLILQRLKEYGFTVRIEKCSFGMQQVKHLGQI
FT                 LDGNGIRPDPEKTTAIVNMPPPHDVSSLRSYLGAVNHYGKYVKDMRNLRHP
FT                 MDQLLKAGTKFEWTPACQASFNRFREILQSPLLLTHYNPKMPIIVSADASA
FT                 FGLGARIAHQFPDGTVKAVYHISRSLTAAESNYSQVEKEGLALVFAVTRFH
FT                 RMLFGRKFTLETDHKPLLAIFGSKKGIPTYTANRLQRWALTLLLYDFEIRY
FT                 ISTESFGHADVLSRLMDRRMRPDEEIVIANLEMEYSIKSVINESLEVFPLS
FT                 FKTVQAETKADETIQQVIRFVNTSWPSKKTDLSDPSVQQFYLRRDSLTIVA
FT                 DCLMYGERLVVPPKFRKRVLQQLHKGHPGVERMRSIARQYVYWPHIDADIA
FT                 NLVQTCTACASVAKTDRKTSLESWPAPEKPWQRVHLDYAGPQDGWYYLILV
FT                 DCFSKWPEVVRTKEITTAATIRMLRSIFARFGIPETLVTDNGTQFTSGAFE
FT                 SYCEKNAIVHLKTAPFHPQSNGLAERFVDTFKRSLKKITAGGESLDEAIDT
FT                 FLQCYRSTPCRSAPAGKSPAEILVGRPVRTSLAHLDYLDYFEANIN"
XX
SQ   Sequence 4178 BP; 1126 A; 1072 C; 1017 G; 963 T; 0 other;
     gtggcgacga ggtacagaag ttttcgtgcg aaaaagttgc gcgttcgtcg aaaaataccg        60
     catttttgtg gatcggaaga ccggggataa agtgcaatgg cggagactaa cggaggatca       120
     gcgtcaggag ggcagccgca gccaacaaac atgacagagg ctgtggtaca cattctgact       180
     aatcagcaag ccctgatgag gcaacttgcg cagcagctga ccgccacaca gattgccgtc       240
     aataacttgt cccgcgacga atcggtgctg gactctctgt caagcaacat ggcggagttc       300
     acctacgata aggagaatgg gcacacattc gacgcttggt tttcccgtta cgttgacctc       360
     ttcgacaaag atgccggcaa attggatgac gcagcaaaag tgcgacttct tctgcgaaag       420
     ttgagcccac ccgaccatga gcgctacaac agcttcatcc ttccgaagct cgctcgggag       480
     tttaccttcg aagagacggt ctctaaactt aaatcgctgt ttggtgccac agtttccaca       540
     ttccgacggc gatataactg cttgcagacc aataaggacg acggagatga ttacctggct       600
     tactcctgta aggtaaacaa ggcgtgcgtc gacttcaagc tatccgaatt gacggaagag       660
     caatttaagt gcctcatttt cgtttgtggc cttaaatcaa agcaagagtc tgaaattcgg       720
     atgcgcctaa tcaacaagct gaacgaatcg gcggacttaa ccctgcagca agtggtggag       780
     caatgcaaca ccctagtcaa cctgaagcag gatacggtgt tggttgaagg ttgttcgtca       840
     tcggtgaatg cgatcgctta ccccaagcgg acgaaaccga agcggctggc gtcggcagat       900
     aagagccatg agcaacctaa gaccccctgc tggtcatgcg ggggcatgca tttcagcaag       960
     gactgccgat ttaaggacca tcggtgcaac gaatgcggaa agtatgggca tcgtgaaggc      1020
     tactgtgcat gcttttcgtc caaatcaagc aatactgcag ccagtacgga gaaaaagaag      1080
     aagaagatgc ggaatcaacc attggcgagg acggtaacaa tccgaagcgt cggccagcgt      1140
     aggaaattcg tcgatctcca actcaacaat gtccctcttc gtctccagtt ggacacaggg      1200
     tccgacatct ccatcatttc gcatcggtca tgggtcaaaa ttggtcggcc gagtgcaaaa      1260
     ccagcagtat tttgtgccag aacagcgtcc ggagaaccac ttcagctaat tgcggaactg      1320
     gaatgcaata ttaccctcaa cggcatcaca cgcgggggta agtgttttat tgcatctcct      1380
     aacgtccatc tcgacattct aggcatagac tggatggact tatttggttt gtggaatcat      1440
     ccgatcgctt cgttctgcaa ccagataacg tcgcagccaa cacatcagat ggttgctctt      1500
     caagcgcagt atcctgaggt gtttaccagt gagatgggtc tatgcaacaa gactcccgtc      1560
     aaactggtac tcaaaggcaa ccccaaaccg gtgtttagac caaaacgtcc ggtagcatat      1620
     tccatggagc aagcagttga ggacgaactg ctgcgactac aaggcttggg cgttttaaaa      1680
     aaggtggatt tcagcgattg ggcggcaccc attgtcgcag tacggaagcc aaacggaacc      1740
     gttcgcatct gtgcggattt ttcaacaggc cttaacagcg tgctggaggc aaatcactac      1800
     ccattgcctt taccagagga tatatttgca aagatggcca actgtcggat ttttagtcat      1860
     attgacttgt ccgatgcgta tctgcaggta gaagtggacc ctgcctgcca accactcttg      1920
     accatcaaca cgcataaggg cctcttccag tttacacggt tgtcaccagg tatcaaatcc      1980
     gcccctggag ccttccaaca gctgatggac gcaatgttgg ctggcctcga gtataccgtt      2040
     ggttatctgg atgacatcct ggtaggtggt cgcaacgagg aagagcacca gcgcaacttg      2100
     caactcattc tccagcggct caaagagtac gggttcaccg tgcgcatcga aaaatgtagt      2160
     tttggcatgc agcaagtcaa gcacctgggg cagattttgg atggtaacgg aattaggcca      2220
     gatcctgaga agacgacagc aatcgttaat atgccaccac cgcacgacgt ttcttcgctt      2280
     cgttcttatt tgggagccgt aaatcattat ggcaagtacg tcaaggatat gcgcaactta      2340
     cgacacccca tggatcagct gctaaaagca ggaacaaaat tcgagtggac gcccgcttgc      2400
     caagcatcat tcaatcgatt tcgagaaatc ctgcaatcgc cgttactcct tacgcactat      2460
     aaccccaaga tgcctataat tgtatccgcc gatgcatctg catttgggct gggagctcga      2520
     attgcacacc agtttcctga cgggacggtc aaggcagtgt atcacatttc ccgtagcctg      2580
     acagcagctg aaagtaacta cagtcaggtt gaaaaagaag gcttagcact cgtttttgcc      2640
     gttacccgct ttcatcgaat gctgttcggt cgaaaattca ccctcgagac ggatcacaaa      2700
     ccgctactcg ctattttcgg atccaaaaag gggattccga cgtacacggc taatcgtctc      2760
     caaagatggg cattgaccct actcctctac gatttcgaaa tccgctacat ctcaaccgag      2820
     agctttgggc acgctgatgt tttgtcacga ttgatggatc gccgcatgcg cccagatgag      2880
     gaaatcgtca ttgccaatct cgaaatggag tactcgatca aaagcgttat caacgagtcg      2940
     ttagaagtat ttccgctatc gttcaagaca gttcaagcgg aaactaaagc cgatgagact      3000
     atacagcaag tcattcggtt cgtcaacaca agttggcctt cgaaaaagac ggatctatct      3060
     gatccttcag tgcaacagtt ttatttgcgc cgtgattctc tcaccattgt agctgattgc      3120
     ctaatgtatg gagaacgact ggttgttcca ccaaagttcc gtaaacgggt gctccagcag      3180
     ttacacaaag gtcacccggg tgtggaacgc atgcggtcaa tcgcccgaca gtatgtctac      3240
     tggccacaca tcgacgcaga tattgccaat cttgtccaga cctgcaccgc atgtgcctcc      3300
     gtagcaaaaa ctgatcgtaa gacatcactt gaatcgtggc ctgcacctga gaagccgtgg      3360
     cagcgtgtgc atctagatta tgcaggtcca caggatggat ggtactactt aatcctggtg      3420
     gactgcttca gcaagtggcc cgaggtggta cgaaccaagg aaatcaccac cgcagcaacc      3480
     atacgcatgc ttcgcagtat ttttgccaga ttcgggattc ctgaaacact ggtaacagat      3540
     aatggcacac aatttaccag cggtgccttt gaatcgtact gcgaaaagaa tgctatagtc      3600
     cacctgaaaa ctgctccttt ccacccgcag tcgaatggcc tcgcagagag gttcgtggac      3660
     acctttaaaa ggtcgctcaa gaaaatcacc gccggagggg aatcattaga tgaagccatc      3720
     gacacttttc tccaatgtta ccggtcaaca ccatgccgca gcgcaccagc tggaaaatct      3780
     cccgcagaaa tcttggttgg cagaccagtt cgaacatcac ttgcgcattt ggattatttg      3840
     gattatttcg aagcaaacat taattagatc tcactgcaac cagcttcgaa ctcgccacca      3900
     gcccgatgat caccaagaac aagcgcagtc accagatgac cttcaagttc cccttagtat      3960
     tttgctggac aattgcggtc tcaatacgac atcggcttcg gaggttgcag ttggccctgc      4020
     tctgcaacca ggacttcaac agcagcctac tcaacgtgaa aaccaacgcc gtcccacagg      4080
     caaccaaatg caacaaccga ttcctactcg ccagtctacg agggttcgta gaccgcctgt      4140
     gagatatgaa ccttatcaac tttattaaaa gggggagg                              4178
//
ID   Gypsy-146_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-146_AA_;
KW   Gypsy-146_AA-I; Gypsy-146_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions 2258626 2258398.
XX
SQ   Sequence 229 BP; 60 A; 52 C; 52 G; 65 T; 0 other;
     tgttgggagg cccctcaccg acatcgccac aagggctctt cagctgatag gtgtcagact        60
     gacagatgcc aacacgatcg tcggtgtatg acccggaagg cgtcatcagt tagattttgc       120
     gatagcaagt gattcacacg tttttagtaa ttgtaacctg tagcaaataa agttatattt       180
     tatactgtcc gtgaatcgcg tgcgtatctt catttccaat atcgcaaca                   229
//
ID   Gypsy-147_AA-I repbase;    DNA;    INV; 7038 BP.
XX
AC   AAGE02030242;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-147_AA_;
KW   Gypsy-147_AA-LTR; Gypsy-147_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7038
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02030242; Positions   32930   25893.
XX
CC   Positions [3724-4185] - Reverse transcriptase
CC   Positions [5212-5688] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..2938
FT                 /product="Gypsy-147_AA-I_2p"
FT                 /translation="MNMDREYQVQMSVTYLTPDEVGFELEIRNLTKERERS
FT                 LSVSRRKLKNALREEAEGLIRIFSYKRDPKIELAICRERLERVYDELNDSS
FT                 LDRQMSKTALLHLYHRLKLFKRTFGVGSYGNDATWLFSKVIQTYVSFFNEN
FT                 ALYSPFSVTVQNTVPLELQGAASLAAQVAEQSHDLINLEQPILTSSVGETD
FT                 PTISVPPDAQPVSNPSLIAAENDPHLSFHNLSISATSVSMPNETPLITASI
FT                 VTVASGSDLNMTWATPRYQVASRIQSRQVRFDTARELPTELREPSMSITTV
FT                 QTSAVNTVSSIHASIVNSVSGVRAHSIGNHPESQPDFNQYAASQQLPQNTA
FT                 SPVQWSNPYYHPRTQPQVSFSQPNTGYSNIQQHQYPDFDNPLHSVPINHRD
FT                 SMYQPTFPQAGNPIREHSPVQLSDTIPLRYTPTSVDLVGLYPRRSNPTAPN
FT                 QTPNPYASSRNNFPQSNVRAHTSAPTPSLNPFQDLDFVPLANRSKTIPVVK
FT                 WPMRYAGEDRGAGLNTFLWEVNDWTQSELISEPELLRSFGNLLTGKAKMWF
FT                 ISNKHRFTTYSDLIDSLKATFRHPDLDHFMLLEIYQRRQQKNESFLEFFLD
FT                 VERKFKSLTKPVSEEEIAQTVRRNLRADYKRALIGREFPDLYSLQMAGQEI
FT                 DATNTYLFTKPQGNAQTNAIQATGKPAPFNTASREHGQGSQRGGNKGSNQQ
FT                 QASTQQFRPKQGANPGKPGGKPFLKKDQTNPKTEDKAKRDSRPEKGDSSEG
FT                 EAPESQKGNNGLEGQLRKHVPLNEKFVCFNCRSQQHFTGQCTQPYKVHCQV
FT                 CGFLGFPTHRCPFCSKNSQRRKDRSPSK"
FT   CDS           3328..6063
FT                 /product="Gypsy-147_AA-I_1p"
FT                 /translation="MDFFTAFDLHITRGEEILFLVNEEECPNSNPPRIVEL
FT                 SSEQVAALEKVKRIFKPAMSDQLEVTSLIEHSIELKEEFKESPPIRVSPYP
FT                 YSPTISKALNVEIDRLLQLGVIEESYSDWALNAVPIKKPNGTVRLCLDARK
FT                 INARTKRDSYPLAHVGRILGRLGKTRYLSTIDLKDAFLQIPLSEDSKPLTA
FT                 FCIQGRGMFQYTRLPFGLTNSPATLSRLMDKILGAGELEPWVFVYLDDIIV
FT                 ASDCFEEHIRLLEEVAHRLRKANLSINIDKSKFCRSEVPFLGYLLSSDGLR
FT                 PDPSKVQGILDFEPPKTIRQVRRFLGMVNYYRRFIPDFSAITTPISDILAG
FT                 KPKIVRWSKEADEAFRLIKERLITAPILSNPDFEEEFIIQTDASDRAVAGV
FT                 LTQIQDGSEKVISFVSQKLNSAQQNYSATEKEALAVLMAVEKFRGYVEGSH
FT                 FTLVTDASALQYIRNNKWRPSSRLSRWSLDLQHLDMSIIHRKGTENIVPDA
FT                 LSRSICAIKASRAGTSSFEELVRKVEKEPADFPDFRLEDGQLWKYIPVDDE
FT                 PFDVRFEWKMVPPPENRPRIIQEEHEQSFHLGIEKTVSRLQLRYYWPHMAT
FT                 ETRRWIQRCTVCKESKPATVPTIPVMGKQKLADHPWQIVAMDYIGPLPKSK
FT                 AGYIHILVVQDLFSKWCQLHPVRRIEAGNLCKTIRECWFLKNSIPEIVLTD
FT                 NATTFLSKEFKALLQQYNVKHWTTSRHHSQGNPVERLNRSINAAIRTYCQK
FT                 DQRGWDTKIADIEHVFNNTVHSATGFTPFFVTRNHEIAISGEDHLRMRRKE
FT                 EYEPEERTNQQKKISGEIYDLVSKNLLKAYTSSAQRYNLRKRARPEDLKVG
FT                 QNVYRRNFKQSNAGEYYNAKLAPMYLPCRVVAKHGSSSYELEDSDGKNLGV
FT                 WPAEHIKP"
XX
SQ   Sequence 7038 BP; 2026 A; 1609 C; 1592 G; 1811 T; 0 other;
     tattgtcgct ccaacaaaaa ataggctttc gatttttcga gaattaattt tttcgttgga        60
     gaaggggaat atttttggat ggttgatcac ctaaccttta gagggaaaaa attaatactc       120
     tcaaaataac ctataaattt tgaacccgtc taattttatt ctggcggggt actcatactc       180
     acgatatatt cgttgctaga gaaagagtag gtagcacgtg ctggaggtag gatatatcgg       240
     atgatttgta gccgcacgct gctaagtaga gtagaagaca ccagcggtca accgagagac       300
     aatagttgtt tgttcatatt ttctatctag ttatatttcc atacgtttcg tgcatgcttg       360
     tttttttgct ttgatcgcat tgataggccc aaagtaaacg ggcagtgcca gttttttttt       420
     tagatttgga ttttgcgctc atccaatcat gaatatggac agggaatatc aggtgcagat       480
     gagtgttact tatcttacac ctgatgaagt cggttttgag ctcgaaatca ggaatttaac       540
     gaaggagaga gaacgtagtt tgagtgtaag ccgtaggaag ctcaaaaatg cactgagaga       600
     agaagcggag ggtttgattc ggatcttttc gtacaaacga gatcccaaaa ttgaacttgc       660
     tatatgtcga gagaggttag agcgtgtgta tgacgaattg aatgatagtt cgctcgatag       720
     acagatgtcc aagactgcgc tcttgcattt gtatcatcgt ttgaaacttt tcaaacgaac       780
     ttttggtgtt ggcagttatg gtaacgatgc aacttggttg ttttcgaagg tgatacaaac       840
     ctatgtatca ttcttcaacg agaatgctct ttattcccca ttttctgtca ctgtgcagaa       900
     cacagttcct ttggagctgc agggagcagc tagtttggcg gctcaagtgg cagaacagtc       960
     gcatgattta attaatttgg agcaaccgat tttgacttcg tcggtaggtg aaactgaccc      1020
     aacaatatca gtgccacctg atgcacagcc cgtctctaac ccgagtctta ttgcagcgga      1080
     aaatgatcca catttgagtt tccataattt gtctatttct gccacctcgg tttcaatgcc      1140
     taacgaaaca cccttgatta ccgcgtcaat cgtcaccgtt gcgtcaggaa gtgatttaaa      1200
     catgacgtgg gcaacaccac gataccaggt cgcgtcgcgt attcaatcta ggcaagttag      1260
     attcgatacg gctcgcgaat tgcctaccga gttacgagaa ccatctatga gtattacaac      1320
     ggtgcaaacg agtgcagtga acacggtaag ctcgattcat gcgtcgattg ttaacagtgt      1380
     atcaggtgtg agagcccatt caattggtaa ccatccggaa tcacaaccag atttcaatca      1440
     gtacgcagcg tcacaacagc ttccacagaa caccgcctcc ccagtacaat ggtcaaatcc      1500
     atactaccat cctcgaaccc aaccccaagt tagtttttca caaccaaaca cagggtattc      1560
     gaatatccaa caacatcaat acccagactt cgataaccct ttgcactcag tcccgattaa      1620
     tcatcgagac tcgatgtacc aaccaacgtt cccacaagct ggcaatccaa ttagggaaca      1680
     cagccctgta cagttatccg atacaatccc actgagatat actcccacat cagttgattt      1740
     ggtaggtttg tatccgcgta ggagtaaccc gactgcgccg aaccaaacgc caaatcctta      1800
     cgcttcttca aggaacaatt tcccccaatc aaatgttagg gctcacacct cagcaccaac      1860
     tccttctctc aaccctttcc aagatttgga ttttgtacca ttggcaaacc gatcgaaaac      1920
     cattccggtt gtcaaatggc cgatgcgtta cgcaggagag gatcgcggtg ccggactcaa      1980
     tacgttcctg tgggaagtta atgactggac acaatcggaa ttgatttctg aaccggagct      2040
     actgagatct tttggcaatc tacttaccgg aaaagccaag atgtggttca tcagtaataa      2100
     acaccggttc actacctact ccgatctgat tgacagcctt aaggccacgt tccgtcatcc      2160
     ggacctggat catttcatgt tgctagaaat ctaccaacgt aggcaacaga aaaacgaaag      2220
     ctttctggag tttttccttg atgtcgagag gaagttcaaa agtttgacca agccagtgtc      2280
     tgaggaggag attgctcaaa cggtgcggcg aaacttgcgt gccgactaca aacgtgctct      2340
     cattggtcga gagtttccag atttgtactc gctacaaatg gcggggcaag aaatcgacgc      2400
     aacaaacacc tatctcttca ccaagccaca ggggaatgcc caaaccaatg cgattcaggc      2460
     gacagggaaa ccagcgccat tcaacacggc gtcgcgtgaa cacggtcaag gatcgcaaag      2520
     gggcggaaac aagggctcaa accaacaaca ggcttcaact caacagttcc gacccaagca      2580
     aggagcgaat ccaggaaaac ccggaggaaa accgtttctc aaaaaggatc aaaccaaccc      2640
     caaaacggag gacaaggcaa aacgggattc tagacccgaa aaaggcgact caagtgaagg      2700
     tgaggcgccg gaaagtcaga aaggaaataa tggattggaa ggccagctgc gtaaacatgt      2760
     gccgttgaac gagaaattcg tgtgcttcaa ctgccgaagt caacagcatt tcaccggtca      2820
     gtgcactcaa ccctacaaag ttcactgcca agtgtgtgga tttttaggtt ttcccacaca      2880
     tcggtgtccg ttctgttcaa aaaactccca gcgtcggaag gacaggagtc cttccaagta      2940
     actgttttta gcttgaccga ttctcttatt gcgttcgggt atttgccctt acccgaatgc      3000
     gacgataata ctgaagattt tcaatgctcc tcagttttat caataataaa tgataataga      3060
     ccatacataa aaccaaaaat ttttgatgca gtggttcgaa cactgttgga ttgtggaagt      3120
     cagagaacat tgatctctgc cacaacgtcc ccgctttgga aaacgtctac cacgaagata      3180
     ttgccaagca agttaactct cactagcgcc tcaggggatt cactggacgt ggtgggacgt      3240
     gtgtttcttc cattttggtt tgaaggccaa accaaaataa ttgagaccac aatcgttgaa      3300
     gacttacccg tcgaatgtat cgccggcatg gacttcttca cggcttttga tcttcatata      3360
     accagaggag aagaaattct cttcttggtg aatgaagagg aatgccccaa tagtaaccca      3420
     cctcgtatcg ttgagctaag ctccgaacag gttgcggcac tagaaaaagt taagagaatc      3480
     ttcaagccag ctatgtctga tcagctcgag gtcacctcgc tgatcgaaca ctccatagaa      3540
     ctgaaggagg aatttaaaga atctccacca atacgggtat ccccttaccc gtactccccg      3600
     acaattagta aagccttgaa cgtggagata gatcggcttc ttcaactagg agtaatcgaa      3660
     gagtcatatt ccgattgggc tctcaacgca gtgcccatca aaaaacccaa tgggactgta      3720
     cgattatgtt tagacgcgcg aaagatcaac gcccgaacaa agcgagacag ttacccattg      3780
     gctcacgtcg gccgtatact gggacgttta ggcaagacga ggtacctgag cactatcgat      3840
     ctgaaagacg cttttctaca gataccgcta agtgaagact cgaagcctct taccgctttc      3900
     tgcattcaag ggcggggaat gtttcagtac actcgcctcc cgttcggctt gaccaatagt      3960
     ccagcaacct tatctcggtt gatggataaa atcctcggag ctggagagct agaaccctgg      4020
     gtgttcgtct atttagatga catcatagtg gctagcgact gtttcgagga acatatccga      4080
     cttctcgagg aagttgcaca ccgactaagg aaagcaaacc tatcgataaa tatcgataag      4140
     tcgaaatttt gtaggtctga agtaccattt ctgggatatt tgctgtcatc tgacggactc      4200
     cgacccgatc cttccaaagt ccaaggaatt ttggatttcg aaccccccaa gaccattcgc      4260
     caggtgcgaa ggtttcttgg gatggtaaat tattaccggc gtttcattcc cgactttagt      4320
     gccatcacca cgccgatctc ggacatccta gctggcaaac caaagatcgt gcgatggtct      4380
     aaagaagcgg acgaagcatt ccggctaatc aaagagcgtc tcattaccgc tcccatactc      4440
     tcaaacccgg attttgaaga agagtttatt attcagacag acgcgagtga tcgcgccgtg      4500
     gcaggagtgc taactcaaat ccaggacggg tcagagaagg ttataagctt cgtgtcccag      4560
     aaattgaact cagctcaaca aaattattcg gccactgaaa aagaagcgtt ggctgtttta      4620
     atggcggtag aaaagttccg tggttatgtt gaaggtagcc actttacatt ggtgaccgat      4680
     gcttccgctc ttcagtacat acgtaacaat aaatggcgcc catcgtccag actcagccgc      4740
     tggagtttag acttgcagca tctggacatg agtattatac accgaaaagg aactgagaat      4800
     atagtgcccg acgctctttc gcgaagcatt tgcgcgataa aggcttccag ggcagggaca      4860
     tcatctttcg aagaattggt gcgaaaggta gagaaagagc cagcggattt tccagacttc      4920
     cggctagaag acggacagtt gtggaaatac atcccggtag atgacgagcc tttcgacgtg      4980
     aggttcgaat ggaagatggt gccaccacca gaaaatcgtc cacggataat acaagaagaa      5040
     catgaacagt cgttccatct cggaatcgag aagacggtat ccaggttgca gctgcggtac      5100
     tactggccac acatggccac agaaacccgt aggtggattc agagatgcac cgtctgcaaa      5160
     gaaagtaagc cagccaccgt ccctacaatc ccggttatgg gtaagcaaaa gttagccgat      5220
     catccttggc aaatcgtcgc catggattac ataggacctt tgccgaaaag taaggcggga      5280
     tatatacata tcctggtggt gcaagacctt ttcagcaaat ggtgtcagct ccatcccgtc      5340
     cgcaggatcg aagcggggaa cctctgcaaa acgatccgag aatgttggtt tttgaaaaac      5400
     tccataccgg agatagtcct gacggataat gcaacgacct tcctttcgaa ggaattcaaa      5460
     gcattgctgc aacagtacaa tgtcaagcac tggacaacct ctcgacatca cagtcaggga      5520
     aacccagtcg aacgcctaaa taggtctata aacgctgcaa tacggacgta ctgccaaaaa      5580
     gatcaacgag gctgggacac caagattgct gatattgagc acgttttcaa caatacggtg      5640
     cactctgcca caggctttac gccgttcttc gtgacccgta atcacgagat cgcgataagt      5700
     ggagaggacc acctgcgaat gcgacggaag gaggagtatg aaccggaaga acggactaac      5760
     cagcagaaaa agattagcgg cgaaatatac gacctggtat cgaaaaacct gttgaaagca      5820
     tacacgtcta gcgctcaacg ctataatctt cgaaagcgtg cgcgccccga ggatctcaaa      5880
     gtgggtcaga atgtataccg ccgtaacttc aagcagtcca acgcaggaga atactataac      5940
     gctaagttag cgccaatgta tttaccctgt cgtgtggtag ctaaacacgg gtccagctcc      6000
     tacgaactcg aagactccga tgggaaaaac ttgggcgttt ggcccgctga gcacattaag      6060
     ccctagtttc ctatcagtgc gaaccagcgt tcgtttcttc ctataccttc ctatctgttt      6120
     cctatcctga agatgaacat cagcgatgga aaaccatcaa aatctcactt tcaaagccac      6180
     atgagacagc atttggctct ctcgcgttcc cagagagagg attgtatgct gtgagtggtc      6240
     aagatctcct aatgtgaatg tccaatgttc tctctcagtg ggagtagggt ggtaaggatt      6300
     agcttaggag attttctcat tctgaaaacc tcagaacatc ttttaggccg gccgaatatt      6360
     tcataagttt tatcaaggaa atgcggattc cttctcaact taaaacagat cgctgcgaaa      6420
     actaatgtgt gtcttctaaa aactgaagat ggccaaaatt agggaattct ctagcgttca      6480
     aacaaagtgc gagtatgatg taccagcgtg agaaaatcat tgaatgggac agatttgaaa      6540
     ggaaaagggg aggttgattc gtcgttcata aatacttccc aatgacagtc aaggatgtga      6600
     ccgcgactga tcagtgacgg ttagttggga cgaagctaat tagtcaacca gcgttactct      6660
     cgccagttag cggagtacta cgggtgttcg aggagtcgat gactttattt tggattcact      6720
     gtgatggcgt gccagatcac agggatcccc caattgcgcg tacccgagtc gaacacctta      6780
     taaatccttt tttttttctc tctattgaat ggctttttga tgtatataca tattcataca      6840
     ttttttgtaa atatccaatt cacagttttg tttgtttttc taattcgttg agttcgtttc      6900
     tctattattt aatttttctt ttttttgttt ataccgttgt acaaatttgt tgtttcttta      6960
     gtaattataa ttggtcattt tgtttatatt aaaaaaaaat aacttcatta tttttttttt      7020
     attctacctc gggggaaa                                                    7038
//
ID   Gypsy-147_AA-LTR repbase;    DNA;    INV; 856 BP.
XX
AC   AAGE02030242;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-147_AA_;
KW   Gypsy-147_AA-I; Gypsy-147_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-856
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02030242; Positions   25892   25037.
XX
SQ   Sequence 856 BP; 232 A; 203 C; 238 G; 183 T; 0 other;
     tgttacattt aaaataaatg tcccataggt actactcaat tatcgttaaa ttgtgtttgt        60
     cagagtgtag gagttagatt atttattgta aaaaaatccc cccttttttg tgccgtaaac       120
     tgctgagccc cactccgaca acgaaaacgc gatgacataa gagggaaacg caaaaatcga       180
     ctcttcggtt gggagtttcc gcccatcggc gatcggtgag ggtctcgagt taacgagaca       240
     gacagcgatc gtcctcttgt gctcgaaccg ccgaaggaga cagatcgaaa acttagtccg       300
     ccgtgttgaa ataccactcg cccatcttct gggttaagtc cgcgtgctat agtgttggca       360
     aggagaagat tctgatccct ttggggccga agaactagtg attgtgtaga gaagcgtcgt       420
     gagtgcgagg ccaagacggg ccacgattgg aagaaacccc cccccgaaca agtgaaagct       480
     gccacccgcg agtgcatagt agcgagtaag agttgccgcg tgcgagtgca taatagcgca       540
     attaggccac gaaccccaag ctgacagtgg acgtagtgtg aatatcacga agacagtgag       600
     tgagtgagtc gactggggtg agaaaagtgt gaggacggcc ccctcccagt gatagcgtta       660
     gtgagtccgt cctacggaga gaaggacgcc gctgccgcgt gcgagcgtga gtgtgggcca       720
     tagaccggtc tggaaagcgg cggaaggaac cccttcccaa cctaattaat accctcgatt       780
     agggaagcca ggaagccccc gagatgagtc actgaggtaa gtcgcatgca tcctactgag       840
     ttaaccctaa cttaca                                                       856
//
ID   Gypsy-148_AA-I repbase;    DNA;    INV; 7001 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-148_AA_;
KW   Gypsy-148_AA-LTR; Gypsy-148_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7001
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1021-1021 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4616-5128] - Integrase core
CC   'AGGT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           452..2266
FT                 /product="Gypsy-148_AA-I_2p"
FT                 /translation="MAKASNASIINAFDLSEEELDYELKIRNIFLEEPEPH
FT                 KRERLRNAFKNESQAPVLTEAIYFLNEWPIAVRKLRIIEQGLKGDIHIRWI
FT                 SQLRHWKERIERSKVTDLAQEEQKYDVLLAIRQLMNNYKETIKKLMNLSDS
FT                 EEDKLKWDMEGLKLGQNSKPKTQFQEKFEGNIQFHSSLAPRAPKVNEMPYE
FT                 NNAGKNTHKTVGDLFTNLPNIRDIRIGPETARSMMDEREALRLGTRPKDLN
FT                 QRHKEVKIKGHKVEKHKKHDKSSKKRLPQSSSSSEESSSLDSLSSLLSSDS
FT                 SSDAELLESSERGFSRNRRDDRFQHYRLDRWGIQFSGDAQGMDVADFVFQV
FT                 NELIASERIPDDRFLDQAYILFSGEARRWYFTYKKKYKTWNSFAKHLKIRF
FT                 GDPNKDRKLLQDIKDRKQKKGESFVAFCAEIEGMFERMTKQYSERKRLKVL
FT                 RNNMRRWYKTKLTFYKIKSIAHLSMLCQQLDKDSGRIYSKNTQPFKKHVRN
FT                 VEATSESSSSSSEDADVCAFERRNRQEQKERSKYFSQKTGDLSAGKEVLKE
FT                 PTALCWNCRKYGHRWRDCKQPKVIFCHACGTPGVTFLTCPKSHLLPQKNSK
FT                 NEVLEEN"
FT   CDS           2395..4467
FT                 /product="Gypsy-148_AA-I_1p"
FT                 /translation="MALLDSGAEISVMNSLDIVNKYNFKLHKSKLKVDTAG
FT                 DSSYECVGFVNLPITYNNITKVIRIYVVSEFSKKLILGINFWKAFDIVPAI
FT                 KGESNQIRTTHLSEIQSNDSLEFSENHFSSENQCIALKFNTFVGALEETMD
FT                 NEEDLTLDIPTLDFESVPIDTIETEHSLTEQDRAKLLDAIGQFEVSEENRI
FT                 GKTALLEHEIKLIPGVELKASPMYRCSPYVQKFVDEEIERMKLMDVIEPCE
FT                 SEYASPLLPVKKPNGKFRVCLDSRRVNSATRNDAYPMPHLHEILHRIEHAK
FT                 YFSVIDLKEAYWQIPLTENSRGLTAFRTKMGLFRFKVMPFGLKGAPFTMAK
FT                 LMDLALGCDLQPYVWVYLDDIIIATKTLSHHIQLIKEVAKRLKQANLTISL
FT                 AKSKFCRKSVRYLGYIVSEQGISIDMEKVRPILDYQPPKTVKDIRRLLGLA
FT                 NFYQKFIKNYSAITAPITELLKKENKKFLWTAEAEKALENLKEALISPPIL
FT                 ANPDFNELFTIESDASDLAVGAVLTQIQNGEKRVIAYFSKKLNSTRRKYAA
FT                 VEKECLAVLWAIEAFRNYVEGTHFKVITDARSLVWLSKVSAEKGSAKLCRW
FT                 ALKLQQFDFSIEYRKGRDNITADCLSRSLNTISTKWEDLEHDSLKKKISEY
FT                 PNEFKDFKVIDNNIYKYVKDDSKITDNRFNWKIVPKKIRDFN"
XX
SQ   Sequence 7001 BP; 2592 A; 1085 C; 1368 G; 1956 T; 0 other;
     ttggcgccca actttcttaa agcttcgacc cactggaatt ggaattttga atatttgaat        60
     tagaccaaca acacctatta ttttagttaa ttaaggaaaa gttatattag tttatgagat       120
     atattgaaga attattgatt cgagcactta gattaagaaa tatttgaatt ggatatcgaa       180
     ttaagcaaag ttttttcttt attattattt ttcttttcgt ttttttttct tttttttttt       240
     tggtgaaagg tttttttttt ctttgtttta taggataagt agataaaaaa agatttttgt       300
     ttctttcttg aattttgttt tatattttgc tattttctat atttttttct tcttctttta       360
     aaatttttat tcggacgaaa ttgttttcct taaccatcaa cggggtaccg atttcctaaa       420
     aaaaaaaaaa ataaacataa aaataataaa aatggcgaaa gctagtaatg caagcataat       480
     aaatgcattt gacttaagtg aagaagaact agactacgaa cttaaaatca gaaacatatt       540
     tctagaagaa ccagaaccac acaaacgaga aagattgagg aatgctttta aaaatgaaag       600
     tcaagcacca gtgctgactg aggccattta tttcctaaat gagtggccca tagctgtaag       660
     aaaactcagg attattgaac aaggactaaa aggagacatt cacattcggt ggatatctca       720
     gcttcgccat tggaaagaac gcatagaaag atcaaaagta acagatttgg cacaagaaga       780
     acaaaaatac gatgttttat tggccattcg acagctcatg aataattata aagaaacgat       840
     taaaaagtta atgaacttga gcgactccga agaggataag ctaaaatggg atatggaagg       900
     attaaaacta ggtcagaaca gtaaaccgaa aacacaattt caggagaaat ttgagggtaa       960
     tatacaattt cacagtagtt tggctcctag ggctcctaaa gttaatgaaa tgccttatga      1020
     aaataatgct ggtaaaaata ctcataaaac agtgggcgat ctttttacaa atctaccgaa      1080
     cattagggat attagaattg gtccagaaac cgcgaggagc atgatggatg aaagggaggc      1140
     gttgagatta ggaacaagac caaaagacct taatcagaga cataaggaag ttaaaatcaa      1200
     aggacataaa gttgagaaac acaagaaaca tgataagagc agtaaaaaac ggttacctca      1260
     aagttcgtca tcctcagaag agagttcttc cttagattcg ctgagtagtt tgttgtcctc      1320
     agattctagc tcagatgcag aacttctaga aagttctgag cgaggattct ccaggaatcg      1380
     tcgcgatgat cgttttcagc attatcgttt agatagatgg ggaattcagt ttagtggtga      1440
     tgctcaagga atggatgtcg ctgattttgt attccaagta aatgaattga tagcttcgga      1500
     acgaatccct gatgacaggt ttctagatca ggcatacatt cttttttccg gagaagcgcg      1560
     acgttggtac ttcacctata agaagaaata caaaacatgg aatagttttg ctaagcactt      1620
     gaaaatacgg tttggagatc cgaataaaga tagaaagtta ctgcaggata ttaaggacag      1680
     gaaacagaaa aaaggggaat cttttgtcgc gttttgtgca gaaatcgaag gcatgtttga      1740
     gcgaatgacg aagcaatatt ccgaaagaaa gaggctgaag gttctaagaa ataatatgcg      1800
     taggtggtat aaaacaaaac ttacgtttta caaaattaaa agcattgctc atctcagtat      1860
     gttatgccag cagcttgaca aagacagtgg taggatttat tccaagaata ctcaaccgtt      1920
     taaaaaacat gttaggaatg tcgaagctac ttcagaatct tcatcgtcat cttcggaaga      1980
     cgctgatgtt tgtgcttttg aacgcaggaa cagacaagaa caaaaagaaa gatctaaata      2040
     tttttcacag aaaacaggtg acttgtcagc agggaaagaa gtgttgaaag aacctaccgc      2100
     actgtgctgg aattgtcgaa aatatgggca ccgttggcga gactgcaaac agccaaaagt      2160
     aattttttgt cacgcttgtg gaacgccagg ggtgacattt ttgacttgcc caaaaagcca      2220
     tttgctacca caaaaaaact caaaaaacga ggttttggaa gagaactaag gggtatttct      2280
     tttccaaata tcaaaaataa ccccaacaac ggggagattt ccaatgttta tgagttgatc      2340
     gttgagccca gaaaatgccc tcatatcaaa attaaaatag tggactcaga aattatggca      2400
     ctcttagatt cgggcgcgga aatatcagtt atgaattcct tggatattgt aaataaatat      2460
     aattttaaac tacataaaag taagctaaaa gttgatacgg caggtgatag tagctacgaa      2520
     tgcgtaggtt ttgtaaattt accgatcact tataataata tcaccaaagt tattcggatt      2580
     tacgtggtct cagagttttc aaaaaagtta attcttggaa tcaatttttg gaaggccttt      2640
     gacattgtgc ctgcaattaa aggcgaaagc aatcagattc gcactactca tttgtcagaa      2700
     attcaatcaa atgattcatt ggaattttca gaaaatcact tttcgagtga gaatcaatgc      2760
     attgccttaa aattcaacac ctttgtgggg gcactggaag aaaccatgga taatgaagag      2820
     gacctaactc tcgatattcc gacattagat ttcgagtccg tgccaataga cactattgaa      2880
     acggaacatt cgctcactga acaagaccga gcaaaattac tagacgcgat aggccaattt      2940
     gaagtttctg aagaaaacag aatagggaaa acagctttgc tagaacatga gattaagtta      3000
     atcccaggtg tagaattgaa ggcatctcca atgtacagat gctctccata cgtacaaaaa      3060
     ttcgtagatg aggaaataga aaggatgaag ctaatggatg ttatcgaacc atgcgagtcc      3120
     gaatacgcaa gtccgttgct tccagtaaaa aaacctaatg gtaaatttag agtatgcctc      3180
     gattcgcgtc gagttaattc agcgacaaga aatgacgcat atcctatgcc tcatctacat      3240
     gagattttgc acagaataga acacgccaaa tattttagtg tgatcgactt aaaggaagct      3300
     tattggcaaa ttcctctaac cgagaactct cggggtctca cggcttttag gacgaaaatg      3360
     ggccttttta gatttaaggt aatgcctttt ggattaaaag gagccccatt caccatggcg      3420
     aaattaatgg acctagcatt aggctgcgat ttacaaccat atgtgtgggt ctatttagat      3480
     gatatcatca tcgctaccaa aacacttagc catcatattc aactaataaa agaggtagca      3540
     aaacgattga aacaagctaa tttaacgatt agcttggcta agtcgaaatt ttgcagaaaa      3600
     agcgttagat accttggtta tattgtttct gagcagggaa tttccattga tatggaaaaa      3660
     gtgcgaccga tattggatta tcagccgcca aagacggtaa aggatataag gcgactatta      3720
     ggattagcga atttctatca gaaattcatt aaaaactata gcgcgattac agcgcctata      3780
     acagagctat taaaaaaaga gaataaaaag tttttatgga ctgcagaggc agagaaagca      3840
     ctggagaatc tcaaagaagc tcttataagt ccaccaattt tagctaaccc agatttcaat      3900
     gaactattta cgatcgaatc tgacgcatct gatctggcag taggggcagt tttgacccaa      3960
     attcaaaacg gggaaaaacg agttatagcc tatttcagta agaaactgaa ctctaccaga      4020
     agaaaatatg cagctgttga aaaagagtgt ttggcggttt tgtgggctat tgaggcattt      4080
     aggaattacg tagaaggaac acattttaaa gttataacag atgctcgtag tttagtatgg      4140
     ctatctaagg taagtgcaga gaaaggatcg gctaaattgt gcaggtgggc tttaaaactg      4200
     caacaattcg atttcagtat tgaatatcga aaagggcgcg acaatataac agctgattgc      4260
     ctatcaagat ctctcaacac catttcaacg aaatgggagg acttggagca cgatagccta      4320
     aagaaaaaaa tctcagaata cccaaatgag tttaaagatt ttaaagtaat cgataataac      4380
     atttacaaat atgttaaaga tgactctaaa ataacagaca atcgatttaa ttggaaaatt      4440
     gtgcctaaaa agatcagaga tttcaactaa taaaaactac ccatgaggaa gcacacctag      4500
     gatttgaaaa aacgttagaa aaaattaaag aaaaatatgt ctggccttta atgtacacgg      4560
     aagtgaaagc attttgtaat tcatgtttgg catgtaaaac gtctaaatct gataatcaaa      4620
     atcatgtccc accaatggga aaacaaaaat tagcaacaca accttggcaa atttagctat      4680
     tgattatgtt ggcccatttc caagggcgaa aaagacagga aatacatgcc tccttgtcat      4740
     cactgacatt ttttctaaat ttgttataat acagccgtta aaagaagcca aagccaaaca      4800
     actagttttc ttcctagaaa atatgatatt tttacttttc ggagtgcccg aaatagtttt      4860
     atccgataat ggagcccaat ttttgtctaa ggacttcaaa agccttttgg aaaaatacag      4920
     tgtgactcac tggttaacgc ctgtgtattt tccacaagta aataatgctg aaaggaccaa      4980
     ccgtgtgatt acttcgtcga ttagggctct aataaaaaag gaacaggatc actgggacga      5040
     aaatatttac aagattgcaa atgcgattaa taatgcgatt cattcatcca gtggattttc      5100
     gccgtacttt ataaattttg gtaagaatca aataagttca ggtgaagaat atcaaaatct      5160
     gagagactta aacaatgata ccacaccctc agggaaagag cattctgaat caatgaaaca      5220
     aatatacgaa aaggttagaa ataatttaaa aatagcgtat gataaatatt caaaatatta      5280
     taatttaaga actgggaaat taattgaatt tcgggatgga gacaaagtgt taaggaaaaa      5340
     tcactttttg tcagataaat caaaagcatt caatgccaaa ttagctccaa aattttcgga      5400
     ggcaataata agaaagaaag taggggaagt ttgttacatt ttagaagact taaatgggaa      5460
     atcgttagga ctataccatg tatcccaatt gaaaaagtta taaaagtaaa aagtaaaaag      5520
     gaaccagcta tgtacagaaa caaagcaagc aaattgcaaa tgctgatgca taaaaatacg      5580
     tcaaatcgga aattgaacaa aaaaaaaaaa aagctaaacg agcaaataag gaaaacaaat      5640
     cttaattatt tacaggattt ttacacatcg caacgtacta cgaaatataa aaaggagttt      5700
     ttgaattcga attatcttaa aagagcataa tagtaaaaaa aaaaaaaaaa ataacaactc      5760
     aagctgaaaa gcgaatgaaa ataaaaaaga ttacaagcta tgtacacaaa caaggttgca      5820
     ggaaaataac tgaagcacaa aaatacgcaa agtcggtaat aggagttttg gtagggaagg      5880
     acaaaaaatt aaaacgatga agaaaacgga ataaaaacta gcgacttacc aaaaaccaca      5940
     atcattgcat gcctgaggat caagtgtcct acgcgtttga ttcctccaat gggtgtgcta      6000
     aaataagaaa ttattttgta aatatgtaaa tagtaggttt aaataattat agccagagct      6060
     ttgaatcttt tagcaaaaag acatcaaaag ttaaaaaaaa aaaatcaaaa caaaataaag      6120
     gttggctcag cgttagattc acaagaatct agcaaccgag accatccaat acattggagt      6180
     taattattca aaacaaattt agttttaggt caaagaatac actaacaagt tcaaaaggcc      6240
     atgtatataa actaaatatt taaagtaata aaaaaataga atatttatta ttaaggaata      6300
     cggtacttac gtttttggtg aagtaaacac aggttttcat ccacgatcat tatccacaat      6360
     agcccggtac acacagttca ttggcattat agatttcata tccaactgct cgcagtaaca      6420
     taccatcgag gacaatagca atgtttgatt tgatagccag caatagccta ggtacccaaa      6480
     agcaataata caaaacccga gagatgtgtg cggtaataca cgtttttttc agagagttga      6540
     tgttgtttcc atatcgtgat atggtgtaga atcggttaga gtagatacat tttttttaat      6600
     aaccaatacg aatacgcatt attcaattcg tgattcgttt ttggattgtt tggaatatgt      6660
     attcatagta gtttgggttc agtatccaat atgtgtattg gagtaaataa tttgacaaag      6720
     gagtttccaa taagtctatt ggaggttttg ggatacaact cagttagtgt cgtgtaaatg      6780
     atccggaaag cacggatctc gggtgcgcag tttcggttca aaatgtcggt ttctcgccaa      6840
     aataagtttc ggttattagt ttactacgtc ggtatcgtca ttaagaatga attcggttag      6900
     tagaaaagcg tttttatgtg ctagataaga taaagtgcta agtagataaa gtaagaaaaa      6960
     aaaaattgcg aagcaatttt tttgggataa gtgggggatg a                          7001
//
ID   Gypsy-148_AA-LTR repbase;    DNA;    INV; 1951 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-148_AA_;
KW   Gypsy-148_AA-I; Gypsy-148_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1951
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1022-1022 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1951 BP; 610 A; 370 C; 454 G; 513 T; 4 other;
     tgaaacggat ttacaaccgt ctcattcaga accctatcca aattgaattt gcgcctgcaa        60
     aataggcaac cctaatgtaa aagtgctcga atcgatagtt gttttaaaag tattaaaatt       120
     ttggttaaag tccagtcgga ggatagtgtg tgttggttaa gtagtaccag gaaagtaaat       180
     ttttaatatg aaataggtaa tcaagaaatt gaaccggaaa cctaaatgaa aagaaaaaaa       240
     gaaattataa ggggtcctgg aacggagatc aaatctactc gatctttccc gttcagacca       300
     ccggactgag aagatcgtta taaagtgaat atttcaaaag aagctaattm aaagtgtttg       360
     ctaagtttgc tcaaagtatg aagttctaaa tctaattaaa caaactttaa tgtgaaatgt       420
     tttcctaaag ctattttcag agtgaagttt tgctaaaatt ccattattaa aaaaaatcgt       480
     gagtctagtt gtggaagaaa ttctatcagg gtgagcacat gttaattgag ttttaattaa       540
     gtgatatcta attacaattt aaacaaaaaa ataggaaaat caatcgtgag tcattaatag       600
     ccagtaaaaa tacggagaag aaaagcctag ctgaattgtg aggtaaattc aagaagtggt       660
     attggtggta tttttggtgc taattaagtt tggatttcac agtcaccagc agtgaccaca       720
     ccgccattgg gtggttagtg gaggtgtata gtgtggagga gcgaatcgtc gctagtgcat       780
     gcgagtccat caccgccagc acagaaacca atagcaccta tcttcaacac gtgtgctaag       840
     gatcagacga ggggcgatcc cctggggata tttttcgcct cgtggctccg ggccactaaa       900
     gatataccca gagagcgtgg ccaacggtgt aaggagtccg gcctcgcgag caccacccgt       960
     caccacgtgg ttgcggagat ttgcgagacg tctgagtgag gaaagtctgc caccgccgga      1020
     gtgaatcgcc cttgactcac gtcccgggaa aaacccatgg taatcaggcc gtctgatccg      1080
     tgttccatcc accccatcat cgggatccat ctcgtcgtgg tgttgtttac gtcgaccgtc      1140
     gcgggatcga gcttcgcccg agctcaattc gtggacgacg cccatacgac gaccccgaac      1200
     ctcgtgctgc cgtgagattg aagcagtacg atcctccaca gtttcatcgg ggcctaccgt      1260
     cccgactctc gaaagtgatc gtacaagaac cgacggccgg cggccgttat ccgccaggta      1320
     acccacgagt ctacggagag ctgtaagtac caaaaccata ccacgacagt agtgaaccga      1380
     tttgatacca ccactaataa cagtaacggc cggtgggatt gtaacagtag tgaaaacgag      1440
     agtaattcgt ttcgactcac agagaaccga taaatagatt tgcaagtgac gtcactgata      1500
     ggattgtttt taataaattg tcgcaagctc aaggaaatgt tgcagagatg agagatagct      1560
     aggaaagaag tgttgcatgc aaccaaatac aaaattcaaa ctgcaaagta gcttttgaaa      1620
     ctaaattatc ttttttttct aataataaat agattttcga gaacaattta attcttctga      1680
     tcggcttcaa waattttaac ttaattttat gaataaactt tgggaatgtt taaaagaact      1740
     tttagtgaat agwtttgaat tttgcgttgg gaaggaaaac caattttggg aaggaagctt      1800
     gggagatttg ggaggtaaaa aaggaggtgg attcttcaaa gggctagata ttgagttagc      1860
     tgggcaatca aacagtgaat tctggcagac gacttacgtc gtctggcgtt waagctagaa      1920
     ttttggaggt ccttgcagga tcctccttac a                                     1951
//
ID   Gypsy-149_AA-I repbase;    DNA;    INV; 4316 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-149_AA_;
KW   Gypsy-149_AA-LTR; Gypsy-149_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4316
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1023-1023 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3341-3721] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..3506
FT                 /product="Gypsy-149_AA-I_2p"
FT                 /translation="MRWVQRLENAFAIYAIDDEEMRKNLLLHHMGPESYDI
FT                 ICDKIAPDTPRARTYQQIVDILETFFNPRPLEISENFRFKCRRQGDKDAAS
FT                 PDESVDEYLVALRRIAVTCNFGQYLETALRNQLVFGIRRNDIRSRLLERRE
FT                 LTLQDARDIAVSMELSKKGGAEIEGNQGKLDVHKVQHQPGKRNKSKTKINE
FT                 GEKRFNQKGAGGSDISCYRCGEKSHLANACKHKQTECKFCGLKGHLERVCM
FT                 KKSGSKPSSARPSGKQNTVQTNFVDNSGNDCKDACAVVREVCSVNSISDNA
FT                 KIWMKVRVNGVQLRFEVDTGSPVTIVSANCWKELFPAAQLRKCDTNLVSYC
FT                 NTNIEVLGIMDARVEFDGQNSQLPLYVVKSEKHPLIGREWLSRLSVDWNIL
FT                 LRNKSAVNEIRRGVSGSNAAASNDTAAAVKMVLQKFPRVFEDSIGKISRVQ
FT                 ANLPLKKDVHPVFLKARKIPFNLQNVVEAELDKLVAEGVLTKVNQSNWATP
FT                 IVPVKKSHNRVRICGDYKQTVNPNLVVDRHPLPTVDELFASLAGGKKFSKI
FT                 DLVQAYLQMEVAPEDREILTLSARRGLYRPNRLMYGVASAPAIWQRQMESL
FT                 LQGIEGVSVFLDDIKVTGPDDETHLRRLEEVLRRLDENGIRVNRDKCDFFA
FT                 EKIEYCGYLIDEEGIHKIQKKMEAIQEMRRPKNKDEVRSFVGLINYYGRFF
FT                 RDLSTVLYPLNNLLKNEVSFEWSTQCEKSFQAVKEQMQAETCLVHYSPELP
FT                 LVLATDASPYGVGAVLSHIYPDGSERPIQFASQTLNRTQQAYLHVDKEAYA
FT                 IIFGVKKFFQFLYGRRFVLVTDNQAVTKIFGEHKGLPVMSALRMQHYATYL
FT                 QSFDYEIRFRKSASHANADALSRIPLKLADPDNVIDESDLVEMHQIETLPL
FT                 TAAELAQATAEDSTVKKLIQGIKYGVLVEGKDRFGIDQSEFAMQKGCLLRG
FT                 IRVYVPAPLRKRVLEELHSTHFGATRTKSLARGYCWWNGMDNAIEEMIANC
FT                 VECQSVRREPAKMSLHCWETPTAPFQRVHVDFAGPFLDTYFFILVMHLRNG
FT                 RRLECVVPSLLTVQFGCVVRFSAPLEYRQCSSAITVFSLRPSNFNSSCG"
XX
SQ   Sequence 4316 BP; 1099 A; 1012 C; 1213 G; 992 T; 0 other;
     gttctggcga cgaggatggc gaatccggac gatgctgctg ctgctcttgc ggctcctgct        60
     gctgctgctg ctgaacgtgc tgtgcctgct gctcctgctg tcctgctgct gcccgtgctg       120
     tgcctgctgc tggtgttccg ccacccagtt ttgcgataga tcccttcgac aagcgaaagc       180
     tgaagtggat gcggtgggtg caacgattgg aaaatgcgtt cgccatttac gcaatcgacg       240
     acgaagagat gcggaaaaat ttgctgctcc accatatggg ccccgaaagc tacgacataa       300
     tttgcgataa aatcgcaccg gacacgcccc gtgcgagaac atatcaacaa attgttgaca       360
     tcctggagac gtttttcaat ccccgcccgc tcgagataag tgaaaacttt cgttttaagt       420
     gccgtcgcca aggtgacaaa gatgcggctt cgccggatga gtccgtcgat gaatatttgg       480
     ttgcattgcg acggattgcg gtaacctgca actttggcca gtacctggaa actgcgctcc       540
     ggaaccagtt ggtgtttggc atcaggagga atgacatccg aagccggctg ctggaaagac       600
     gagagctcac cttgcaggac gctcgcgaca tcgctgtgag catggagctg tcgaagaaag       660
     gtggagcaga aatcgagggc aaccaaggta agctggatgt ccacaaagtg cagcaccaac       720
     caggtaagcg gaacaaatcg aagaccaaaa taaacgaagg ggaaaagcgt ttcaatcaga       780
     agggggcagg tgggagtgat atcagctgct accgttgtgg cgagaagtct cacctggcta       840
     atgcttgcaa acacaagcaa accgaatgca agttttgcgg cctgaaggga caccttgaaa       900
     gagtgtgcat gaaaaaatct ggctcgaagc ccagtagtgc gcgaccgtcg ggcaaacaaa       960
     atacggtgca aacgaatttc gtggacaatt ccggaaatga ctgtaaagat gcgtgtgccg      1020
     ttgtgcgtga agtgtgttcg gtaaactcca tatcggacaa tgcaaaaata tggatgaaag      1080
     tgcgcgtgaa tggagtccag ttgcggtttg aggtagatac gggatcgccc gtcaccatcg      1140
     tgagtgcgaa ctgttggaag gaactgttcc cggcagctca attgcggaag tgcgatacaa      1200
     atctcgtgag ctattgcaat acgaacattg aagtgctcgg gataatggac gcgcgtgtcg      1260
     aattcgatgg acaaaactcg caattaccgt tgtacgtcgt gaaatcggag aaacatccgt      1320
     tgatcgggcg cgaatggttg agtcggttgt cggtcgactg gaacattttg ctgcggaaca      1380
     aaagtgcggt taatgagata cggcgaggtg tttcgggaag caatgctgct gcttcgaatg      1440
     atactgctgc tgctgtgaag atggtactgc aaaagtttcc gagggtattc gaggattcca      1500
     tcggaaaaat ctcccgtgtt caagctaatt tgccgctgaa gaaagatgtc catccagtct      1560
     tcctcaaggc acgcaaaatt ccgtttaatc ttcagaatgt ggtcgaagct gagttggaca      1620
     aactagttgc tgaaggagtt ctcaccaagg tcaaccagag caactgggcg acgccgattg      1680
     tgccggtgaa gaaatcccac aaccgggtgc gtatttgtgg cgattacaag cagactgtca      1740
     accctaacct ggtggtggac aggcatccgc tccctacggt ggacgaattg ttcgcctcgc      1800
     ttgcaggtgg gaagaagttt agcaaaattg acctggtgca agcgtacttg cagatggaag      1860
     tcgctccaga agaccgcgaa attcttaccc tcagcgctcg tcgtggcctg taccggccga      1920
     accgcctcat gtacggggtg gcatctgcgc ctgccatctg gcagagacaa atggagtcat      1980
     tgctgcaggg aattgagggt gtcagtgtgt ttttggacga cattaaggtg acaggacccg      2040
     atgacgagac ccacttgcgc cgattggagg aagtgctacg ccggctggac gagaacggta      2100
     tccgggttaa ccgggacaag tgcgattttt tcgcggagaa gatagagtac tgcggatacc      2160
     tcatcgatga agaggggatc cataaaatcc agaagaagat ggaggccatc caagagatgc      2220
     ggaggccgaa aaacaaggac gaagtgcgct ccttcgtagg tcttatcaac tactacggta      2280
     ggttcttccg ggacctaagc accgttcttt atcctctcaa caatctgctg aagaacgagg      2340
     tgtcgtttga atggagcacg caatgtgaga agtcttttca agcggtgaag gagcaaatgc      2400
     aagctgaaac ctgtctcgta cactattccc cggaattgcc tttggtgctg gctaccgatg      2460
     cttcgcctta cggggtggga gccgttctga gtcacatcta cccggatggc tcggagcgtc      2520
     ctatccaatt cgcctcccaa acgctgaatc gaacccagca ggcgtaccta cacgtggaca      2580
     aagaggcgta tgcgataatt ttcggcgtca agaaattctt tcaattcttg tacggccgga      2640
     gattcgtttt ggttacagac aatcaagcag tgaccaaaat tttcggggaa cataagggat      2700
     tgcctgttat gtctgctctt aggatgcaac actacgcaac ctacctgcag tccttcgatt      2760
     acgaaattcg atttcgtaag tcggcaagtc atgctaacgc cgacgcttta tcccgaattc      2820
     cactgaagtt agcggatccc gacaacgtca ttgatgagtc ggacttagtg gaaatgcacc      2880
     aaatcgagac acttcccctt actgctgcgg agttggccca ggcaactgcg gaagattcaa      2940
     cggtgaagaa attgatccaa ggcatcaagt acggtgtact cgtcgaaggc aaggaccgat      3000
     ttggaattga ccagagcgag tttgcgatgc aaaaaggttg cctgctgcgc ggaatccggg      3060
     tgtatgtgcc tgcgccccta cggaagcgag tcctcgaaga gctgcactca acgcacttcg      3120
     gagcaactag gaccaagtca ctggcaagag gttattgctg gtggaacgga atggacaacg      3180
     ctattgaaga gatgatcgcc aattgtgtcg agtgccagtc ggtcagacgt gaaccggcga      3240
     agatgtcgtt acattgctgg gaaaccccta ctgcgccgtt ccaaagggtc catgtggact      3300
     ttgcgggacc attcttggac acatactttt tcattctggt gatgcattta cgaaatggcc      3360
     ggagattaga gtgtgtagtt ccatcactgc tgacagtaca attcggatgt gtcgtgagat      3420
     tttcagcacc tttggaatac cgtcagtgct cgtcagcgat cacggtgttc agtttacgtc      3480
     cgagcaattt caacagttcc tgcggatgaa cggcatcgta cataagatgg gtgcgcccta      3540
     ccatccagca acgaacgggc aagctgagcg gtatgtacag actatgaagc agaaactgaa      3600
     gtcgctgaag tgtacgaagg cccagttgaa cgtcgagctc tgcaacatac tgctgaccta      3660
     ccgaaagatg atacatcctg ccaccggtca atcacctgcg atgatgatgt ttggccggca      3720
     gttaagatcg agaatcgacc tgatgttgcc gaagaacgaa gtcgttgatg cgaagaatta      3780
     tacagtgcga gaattcaaag acggtgatcg tgtacgtgtc cgggactttt tatctgccga      3840
     caagtggaag ttcggcagga ttgctgagaa ggttgggaaa cttcgttacg ctgtccgctt      3900
     ggatgacggg cggtgctggg agcgtcacat tgaccatatc gttggtgtgg gcgcttgtct      3960
     tccggatact gcatcgaaca atgctagaat cgagaatcgg gatcaccaca gtccgggagt      4020
     tgctccatcg gttggagtag cgactcctga acgacctgac aatgcatcat cagctacgtc      4080
     aagtgctccg gtctgtgctc cggagattca agctggtcga cgactagcgc cacctgatcc      4140
     tgttccagaa ccagaggaag gtcctccatc tgccggggct acaccagttc cgacccaaga      4200
     agctacacaa cccttgagac gttctaccag ggtagtgaag gctcccacaa ggttgaattt      4260
     gtgatttttt tttttgcagc gaactctaag aactttcttt ttacaagggg gagaga          4316
//
ID   Gypsy-149_AA-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-149_AA_;
KW   Gypsy-149_AA-I; Gypsy-149_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-239
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1024-1024 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 239 BP; 73 A; 51 C; 46 G; 69 T; 0 other;
     tgttacacct accattatta gaactacctt gctctttact tttgacccaa atacccccga        60
     tattgagtag ttgcgcttca gtgtgtagcc agaagaaaaa ggaaaccgtt agcgaaaaca       120
     cgcgtaaaat catgtccgcc gtcgcggttg taaaacagat taatgtaatt aaagtggtga       180
     aataaataga attcgtcgat tagctgttgt gttcatcatt tctctcggcc gtcacaaca        239
//
ID   Gypsy-14B_DWil-I repbase;    DNA;    INV; 5112 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14B_DWil-I.
XX
NM   Gypsy-14B_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5112
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1828-1828 (2012).
XX
RN   [3]
RP   1-5112
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 5112 BP; 1767 A; 1087 C; 1068 G; 1188 T; 2 other;
     ggcgcccgag cagggacccg taatttttct agaagccatg atagcgctaa ccacccttcg        60
     gggggaatct agaaacatta cgggtctaga caatagtagg aagagctcca cagttgaatg       120
     caagccatgt cagcamgacg cgtagtaaag taaaataatt aattgctcag gcacaaacct       180
     gacctatgcc aaataaaaaa aaaagaacaa aacacgaaaa ttataatcta ggccacttgg       240
     ccaacgggaa atgcttcacc tggtgatggt gatatttgag accaacgcgt gcctcggctt       300
     gcataaaact gctgactctt caagtaaccg ccccgaacgc gttttgctaa gaccgcattc       360
     tcacgccggc agatgtcagg caaggcggaa ttagcaaaac gaggggaaat ttttgcgcct       420
     cttgcatttt tggcgttaat atgtgaataa aaagaaaccg gaaggggaat gacacgctcc       480
     cgtggcaacg ggcctttaaa aaaaaaaaaa gaggaaaaaa ttataaaaaa aagaaagatg       540
     accacatgca gtgaggtggt tcaatatggg gggacatgtc atctaattcc tccttccggt       600
     gtcttgcaat aagtgaatga ctggttgaaa gaccaagtcc tccttcagag agggcggaaa       660
     gagttcattc tgaattaacg actaactggt tgaaagacca agtcctcctt cggagagggc       720
     ggaaagagtc gttttgatta gcgaatgact ggttgaaaga ccaagtcctc cttcagagag       780
     ggcggaaaaa gttcattctt tgaatgactg gttgaaagac caagtcctcc ttcagagagg       840
     gcggaaagag ttcattcttg attagcgaat gactggttga aagaccaagt cctccttcag       900
     agagggcgga aaaagttcat tctttgaatg actggttgaa agaccaagtc ctccttcaga       960
     gagggcggaa agagttcatt cttgattaac gaataactgg ttgaaagacc aagtcctcct      1020
     tcagagaggg cggaaagagt cgtttgattg gctgaatgac tggttgaaaa accaagtcct      1080
     cctgcagaga gggcggaaaa agttcattct tgactgaaag gccaaacctt ccttctgaga      1140
     aaggaactgc tgaaagtaaa agtatacgaa tggttgaaaa cccaaaaact agtaccccaa      1200
     ctgaaaatat taaactcttg ttcttgattc tgtcatttag tttattactc aggttatctt      1260
     ggccgtctgc gaacaggagt ggggtgcctc cacttgagta tactcctcag gttgggacac      1320
     ccagctcgcc ttctattttc ctcgtatcgg aaaactgact ctaaagaatg tgtcttcaac      1380
     ctgtgtataa tggtgatcga ttcctcacat ggtggaggtt aatccagata ttcctgaatg      1440
     atcaactcag gaacgttaat cggcttcggg aacggaaagg ggattgtttc ctcatcttca      1500
     tccggaacag gcacagtaat tcctgagctg gcaaagtcat cctcccataa attgtaactc      1560
     tgatcaaagc tgggggaccc tcctctgatg acccgaggga acaattcaga actcaaatcc      1620
     gcaactatga tttcctcctc catgctctcg tcatcagaag gggaatcgca ataaattatt      1680
     cccgtttgca cagttgggtt gaagtttccg tccgatcgct tcatattctt ggctgatact      1740
     aaattaaacc ttacaccagc actgaccact atggtctttg aagacgagaa tatgcttagt      1800
     cagacggttg aggtaaaaga aacaaaaatt cctaaaaaac aacaatgcag gacagaatca      1860
     acgcataaaa ggggtgaaag gagaaatatg aaacacatgc acaagcgcat tttcaattat      1920
     gcacgctcag cataaataac gcgaaaaccg aaaattgtta ccccttccaa gagtttgagg      1980
     aatagtgaca gcataaatga gctactagat tgatggctat ctagcatatg gtatcctaat      2040
     gtgtattttt tcattcttgc agataatatt gtgagtatca cgaattgtaa aatttgctac      2100
     acaacgggtg agattcaaat ccaggtatac acatacacac tttaggagtc acccactcat      2160
     aaaaaacaag tatcgcgtcc tacaataggg aatatagaac tatgtattta aaaattgaaa      2220
     acagttgctg taaaaaaaat gaaatgagtg acaacgaaaa cttgagcaat tggcagccgc      2280
     aggagatgcc gcgtacgtca cattggacaa tgataccatg gtgaatacgc accagtagtc      2340
     acccctgtga cccatagcga acctagatcc cgagtcgagt caaccggtca agccggaata      2400
     ctcaatttaa aaacctacgt tcccaatttg aatgccaacg cagcatttta gagatggaag      2460
     aaaaagtaat atttaagtat catgatgaaa tggggcatgt gggagtagac aaagtagccg      2520
     acttgatagg taaaaattat tggtttccca gcatgagaaa ggaaattgat aagcttgtaa      2580
     aaaatgtata gcgttttcaa acaaatcagg aaaacagaag gatttcttca ctccatacac      2640
     aaaggagata acccgtttca atatttacat atagatcact atggaccgat acatagtaaa      2700
     gatagcaaaa tgaaacacat attagtcgta atagatgcat gtaagttacc atatgaagct      2760
     ttaagactcc aaagcttgcg cagatcgcag gtgatatcca gctctacagt tatcactcga      2820
     ggctttggtc ccacaaagct tgtatattgc agctgatagc agcttgagct cgataagctt      2880
     gaaacccgca cccacgtgtg cgaaagcagt atcaaaaaga actcaaaagg cactacacgc      2940
     aatgctaaag cggtagatgt ctaatactta taaatcaacc taactaaata aataacctaa      3000
     ataaattgga aagcaacgaa attattaact gtactaaatt tgtgcggtta tttgccacaa      3060
     agagtacgaa atcaagtgaa gcaatcgaag cactggaaga atacttcaaa gtatatagta      3120
     gacccaagaa tataatatca gatagaggca gttgcttcac ctcaaaagag ttcgatgatt      3180
     ttattaagga atgtaatgtt aatcatataa aagtagcgac agcatcacca caggctaatg      3240
     gacaagttga gagagtcaat gaagacctag gacccaatgt aagcaatggc atacagttta      3300
     caatgaataa cacaagaaac agatgcacca atgaatatcc aagtataatg ctatttggta      3360
     taaaacaaga ggtagcatga tagacagctt aaaggaaaat gtaatagaag tgaatcaagt      3420
     ttgagaaaat cgaaacttaa cagaaataag ggaaaatgca gtcattaagt aacaaaaatc      3480
     acaaaagcaa gcaaaaagga aaagaataag aataattatg ttccgagtaa tattataaca      3540
     cggaaaaagc tacacaagtc acacattaag taaaaacaca cttatacaca tagcacttaa      3600
     gcaacaagaa gctaagttaa aattaatatc acactaaaaa cacccttcta cttccgatac      3660
     aatacaatac aagccccctc attttgtgtc tctcatcggt ggagagctac aaggttttta      3720
     aatatgagtc cccaattgtg acgctacaac aaggaaaagg atggagaatt gaaggacact      3780
     caaatctggt acatgtaatc cctctcgact cattcgcggg ccttgctgag aacttgtcat      3840
     tagcccttga ccggtaccct tcttgtgacc tgaagacatt ggccactctc aaaatcaaag      3900
     atctaaaaac aaaaatcgag gagctcacgg tctccaacaa gaggactaga cgttcaatca      3960
     aatggttagg ctcagcttgg aaatgggtag cgggatcacc ggacgcagct gactgggacc      4020
     agattctaca atcccaggac tctctgatta gagagaataa ccaacaattc accataaata      4080
     amcaattcct gtccggcatc caagaggcat tcaacaaaat aaacgaactt gcaggagccc      4140
     tgaacacaat aagcaaggat aacgactccg agctatccat cctactgaac aaaatcttgt      4200
     tacttgaacg gaagctggac gaaattgtgc gagcatgcca actcgctaaa gtgggcgtga      4260
     ttaactcgaa cttactggac atagacgagc tgcaggacat catcaacacc acaccaagcc      4320
     tgccttacaa caacatcata gaggccatcg aatttgccca acccactatc ttcgtgaacg      4380
     gtaccctact cctttacaac atagcgatgc cacgggtact acaacaggag tactcggtgc      4440
     agatcatcag gccaaccata acaaataatc agcaacttga cattccctcg ggaaaaatcc      4500
     tggtaggacc acgagacacg tacattatat ccaggagctg ccagaccatg ggaaatatca      4560
     ccatttgtaa ggaatcggat ctcactcacc tggatgaaga atcttgcctg ccaaggctaa      4620
     taaagggagg aaccgcaaaa tgccattcaa taaccaacac ggcaagcccc attgagttac      4680
     tggaagatgg caccatattt acgaccaact ttagaggaaa gatgacaaac ggcgttgtag      4740
     aatcaaacct aaacgggacc tttgtcattc aattctcgaa tgagtcagta acaatcggca      4800
     acaaaacctt cagaagccag acggttacaa ggatggtggc aataccctcc actttgtctg      4860
     aagtcgtaaa cgaaggacat cgacttaatg tggaatacat tcacaacttg cacataaaca      4920
     atttacgacg cctcaacact ctaacgaaag ggaccaccat cacggccggc tgcgccatct      4980
     tcatatttct cgctatctcc ataggttgga ttctgaagaa gacactccaa aaaccagaaa      5040
     caccaccctc ccccagagtc accggccaca gatacaatgg atctccggga cgtcaatttt      5100
     tgagggggga gg                                                          5112
//
ID   Gypsy-14B_DWil-LTR repbase;    DNA;    INV; 807 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14B_DWil-LTR.
XX
NM   Gypsy-14B_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-807
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1829-1829 (2012).
XX
RN   [3]
RP   1-807
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 807 BP; 236 A; 241 C; 141 G; 189 T; 0 other;
     agttagcaca ctcatcctca cacgagacct cctctcatac aaccagcacc cctgggacgc        60
     cttgtccttc aattatcaga ccatgccccg caccccggct tctcccatca cagcgggact       120
     cgatcaacac attttaccag aagcgcctga acgagcatcg ggcaaaatac cctctaagtg       180
     acaccatccc ttgaccatac acacaccttc cacacatgtt aggaacacca acactataca       240
     cacacctttc acacatgtta ggaacacaaa cagaccaccc acagcacgcg tgcatcgcga       300
     cccatatctt ttagtcaact aagctaccta catcttttat ttcctgtaaa cacacttagc       360
     caagtaagca acttatgttt atgcgaccct atcaaaatat gtgacccaag acgacccccg       420
     tggtcacact aggtacttca cttccctctt ctagcataag cacttttttg ccggtctttg       480
     aatactaccg gtaagcagaa ttcgccggaa gaggcgaccc acttctgaca cgatcccaac       540
     gccgctgcca gcggcacgac accgcagcca gcgccctttg ggcatctcgg ggtatattta       600
     aaggaccacg ctcgacagag caggcagtct tagtttagac gtagaactag ttatgtcaat       660
     tacaactaaa taaaatctta taacgttgta aatcaagtgt tgtgttgtgt ctcactgtaa       720
     gaatcccgag tttcccaagt ccaatccttg tatctaagga aggaaatggt aagaattccc       780
     ctataaggga aatggaaact cataact                                           807
//
ID   Gypsy-14B_PPo-LTR repbase;    DNA;    INV; 117 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_PPo-LTR; Gypsy-14B_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-117
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2983-2983 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~83% identical to Gypsy-14_PPo-LTR.
CC   5bp TSDs.
XX
SQ   Sequence 117 BP; 34 A; 25 C; 20 G; 38 T; 0 other;
     tgtgatgtag taggtacatg aatataacct agtctgtaag tacccagcat tatgtacaat        60
     tgatcagtcg gattatacct ctcgaactta cgcacgtctt ttatttcgta caccaca          117
//
ID   Gypsy-14_AA-I repbase;    DNA;    INV; 5132 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_AA_;
KW   Gypsy-14_AA-LTR; Gypsy-14_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5132
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 997-997 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4094-4555] - Integrase core
CC   'AATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           926..2611
FT                 /product="Gypsy-14_AA-I_1p"
FT                 /translation="MLGYFTPYVAIFNFKFVFSLEGLTNQQVVYLFVLDSS
FT                 AMPPFKIGVDPRNDWMKWRKAFDRFLRANKIVDDEEKFDLLLVIGGIELQE
FT                 YYDKITKFEVQYFLPSGESVTLQYDSAVTSLEKYFAPQLNKRFERHLFRAM
FT                 KQDDNEPFNEFVFRLQDQAKRSDFIDVDDMVIDQVVEGCKSTELRKKLLTD
FT                 DLTLNDVMTLGKTIEEVQKQSKQYERPNLSTYEKPLVQRIVEKRPDKYPNV
FT                 ESGRRCYNCNRPGHLAKETERCAARNATCHSCGSKGHFKVCCRKRKHGDSQ
FT                 QRSVPAPKRSMVQAIHDEKTPTKGVFTVNDGIHLNEVLKLEVGGVIMNMLV
FT                 DSGSPANIMSSKSYAWLKQQGANMLNERRPRNNETNLTPFASDQKIFFSDA
FT                 FETEIKIPGDESGVWTHVLVAPDGQTNILSKSTAFALGVLRIGYKINQISN
FT                 STELAEEFPKVPNVLLKIQVDEKVSPVVQVARRLPMSMEADVEEAIRELLE
FT                 KKIIERAEGSLTWVSPLVPVRKADGKIRLCVDMRAANQAVKRENYPMPNID
FT                 AAMMSITKVGTDFCE"
FT   CDS           2774..5038
FT                 /product="Gypsy-14_AA-I_2p"
FT                 /translation="MFGIKSAPELFQREMENLFRGMKGVIVYMDDVLVHGA
FT                 TAEDHDATLARVLQILRDRNMRINEQKSVFSVTEVEFLGYCVADKGIRPTD
FT                 DRVKAILGLQAPTSVSELRSLLGLINFVGRFVPNLSALTFHMRQLLIKDSP
FT                 FEWNKVHEEELGKVKSILGNVQSLGYFDPADDTQLVTDASPYGLGAILIQI
FT                 KNGIPRTISCISRSLAVHEKKYCQTEKECLAIIWAMEKLFVYLYGIKFTLI
FT                 TDCKPLEYLFNRVQSKPSARIERWILRLQSYDFVVRYEPGKNNIADPLSRM
FT                 SQGLEESIGDIDTVAWLAEEIRPSALSIEEIETETKRDDKLQAVKDAIFSN
FT                 NWDAAPVEFRTTTIKDDLTTYGELILRGDRIVIPKQLQDKVVQLAHSGHQG
FT                 CTAMKAQLRAKVWFPSMDKAVESFVRGCKPCKMTGLPDSPNPILRRVPSEP
FT                 WQDVAIDFKEGLSGGLSLLVVVCYTTRFIQVEPMKPATSQRVIAALLRMFS
FT                 VLGIPRSITADNGPQFRAIEFSRFCVCYGIHLNLSTPYWPEQNGAVERQMR
FT                 NIGKRLKISEIQGTDWQTDLYEYITMYHATPQETTGVSPGKMMLGREIRTR
FT                 IPSIRTPYSLQWEEARDRDMGKKEYHKQRADAQRHAKEHTLVRGDTVLMRN
FT                 LDPGALDSTFRGEEFDVINVNNNAVQVRSTETDRVYLRNSSHLKKLEKDRE
FT                 MKCDQSQAKDTEDESCTSVETAETTSNHAEEENIANERFSQRTRKRPSKFR
FT                 DYVV"
XX
SQ   Sequence 5132 BP; 1605 A; 920 C; 1261 G; 1346 T; 0 other;
     atggctacga gaaaaatcgg taagtcgaaa actcggtttt ggaaaaacgg ggaatttctg        60
     cgaaatattg gaggaatatt tttatttgta aaaggaggat gatattttca acaatgggag       120
     ggaggaacag tgaaaacgtt tatgggaaaa caaatggagt gatgaaatgg agaataaaca       180
     taagaatcac atgtcgccat tttgaagggc agagggctag atccggatgt agtgcaagca       240
     ttgaaaaagt taaaacgaaa gattgcggtt atgttcagag aaatggtgtg taatggatta       300
     aagagaagtg acttcatgag cacatttcgg aactaaatcg aggcaaatac cgaaggctga       360
     atacaaacga cgggaaacac agtgtgtgta atagtttgta gcttagtggt ggagctgttt       420
     catgcaagaa gtgctacgtg caaagttatg cttcgtgcaa aataatgcta catgaaatcg       480
     ttagagtcac ttcgtgctgc gtgcaagatt atgcttcgtg caagattatg tttcgtgtaa       540
     ttttcatgac aaaaggtgct acgtgcaaag gaatgcttcg tgcaaagtta tgcttcgtgc       600
     aaagtaatgg tacatgcaat tgccagaatg atttcgtgct gcgtgcaaga ttatgcttcg       660
     tgcaagatta tgcttcatgt aattttcatg gcaagaagtg ctacgtgcaa agttacccta       720
     gatgcaaagg tatgcttcgt gcaaagttat gcttcgtgca aagtaatgtt acgttaaatt       780
     gtccgatttg ttcgtgctgc gtgcaagatt atgctttgta catgagatgc tttgtgcaag       840
     tttatgcttc gagtaattgt ggaacactac atactgtacc caaaattatg aatgctacgt       900
     gcaaagttac gtttagtgcc gttgaatgct gggctacttt actccttacg ttgctatatt       960
     taattttaaa ttcgttttta gtttggaagg cttaactaac caacaagttg tttatctatt      1020
     tgttttagat tcatctgcga tgcctccgtt caaaatcgga gtagatccaa ggaacgattg      1080
     gatgaaatgg cgaaaagcct ttgatcgttt tttacgagct aataaaattg ttgatgatga      1140
     agagaagttt gatttactac tggttatcgg tggtatagaa ctgcaggaat attacgacaa      1200
     gattaccaaa tttgaagtgc aatatttcct tccatccggt gaatcagtta ctcttcagta      1260
     tgactcggca gtgacttcac tggagaagta ttttgctccg caactgaata aaagatttga      1320
     acgacatttg tttcgggcaa tgaagcagga tgacaatgag ccattcaatg aatttgtgtt      1380
     tagattgcaa gatcaggcaa aacgtagcga ttttatcgac gtggatgata tggttattga      1440
     tcaagttgtc gaaggttgca agtcaaccga attacgcaag aaactcttga ccgatgattt      1500
     gacactgaat gatgttatga cactcgggaa aacaattgag gaagttcaga agcaatcaaa      1560
     acaatacgaa aggcctaatt tgtcaacata tgagaaacca ttggtgcaac gtatagtgga      1620
     aaagcgcccg gataagtatc cgaatgtaga atctggaagg cgatgctaca attgcaatcg      1680
     tcctggtcac ttggccaagg aaaccgagag atgcgcggca aggaatgcaa cttgccatag      1740
     ttgtgggagt aaagggcact tcaaagtgtg ttgccggaaa aggaaacatg gagactcaca      1800
     acaacgatcg gtaccggcac cgaaacgttc gatggtacaa gctattcacg acgagaaaac      1860
     acccacaaaa ggcgtattca cagtgaatga tggaatccac ttgaacgagg tgttgaagtt      1920
     ggaagtaggt ggagttatta tgaacatgtt ggtagactcg ggttcgcctg ccaatatcat      1980
     gagcagcaag agttacgctt ggttgaaaca gcagggagcg aacatgctca acgaacgtcg      2040
     tcctaggaat aatgagacaa acttgacacc tttcgcttcg gaccaaaaga tattcttcag      2100
     tgatgcgttc gaaacagaaa tcaaaattcc tggtgatgaa tcgggagttt ggacgcacgt      2160
     attggtggct cccgatgggc agacgaacat attaagcaaa agcacggcgt ttgcattagg      2220
     cgttttgagg attggttata aaattaacca aatatccaat tccaccgagt tagcagagga      2280
     gtttcctaaa gttccaaatg ttctgctgaa aattcaagtc gatgaaaaag tatcaccagt      2340
     tgttcaagtg gccaggcgac tacctatgtc tatggaagcg gacgtcgaag aagcaattcg      2400
     tgaattactg gagaagaaga taatagaacg tgctgaagga tcgttgacct gggtctcacc      2460
     tttggtacct gttcgaaagg cggatggaaa aatacggcta tgtgtcgaca tgcgagctgc      2520
     aaaccaggcg gttaaaaggg aaaattaccc aatgcccaac atcgatgcag cgatgatgtc      2580
     aatcacaaag gtaggtacag atttttgtga gtaaacaata aagttttgat tggtttgttc      2640
     ataaataaaa cagattgcaa gactgtcaaa gattgactta gaggcagcat actaccactt      2700
     cgagttggat gaaagcagcc gtgtaataac tacgtttgta gctcgtagtg gggtttatcg      2760
     attccgcaga ttaatgttcg gcatcaaatc cgcgccggaa ttgttccaaa gagagatgga      2820
     gaacttattc cgaggtatga aaggggtaat tgtatacatg gacgatgtgt tagtccatgg      2880
     agctacagca gaggatcacg atgctacgct agcacgtgta ctgcaaattc tgagggatag      2940
     aaatatgcga atcaacgagc aaaagtcggt gttctcggta acagaggttg aatttctggg      3000
     atattgcgtg gcagataagg gaattcgccc caccgacgat agagtcaaag cgattcttgg      3060
     cttacaagct ccaacatcag ttagtgagct aagatcatta ctgggattga taaatttcgt      3120
     tggacgattt gttccgaatc tctccgcatt gacgtttcac atgagacagc tccttattaa      3180
     agatagtcct tttgaatgga acaaagttca tgaagaggaa ctcgggaagg tcaaatccat      3240
     cttgggaaat gttcagtcac ttggttattt tgatccggca gatgataccc aacttgtaac      3300
     agacgctagt ccgtacggac tgggtgccat tttgattcaa attaagaatg gaatacccag      3360
     aacaatatct tgcatctcca ggagtttggc agtgcacgag aaaaagtatt gccaaaccga      3420
     gaaagagtgt ttggcaataa tttgggcaat ggaaaaactc tttgtatatc tgtatggtat      3480
     caaatttacg ttgatcaccg attgcaaacc tctcgagtat ctgtttaaca gagtacaatc      3540
     aaagccatcc gctcgcatag aacgatggat tcttagacta caaagctatg actttgtagt      3600
     ccgatatgaa ccgggtaaga acaacatcgc ggatcccttg tcgagaatgt cgcaaggtct      3660
     cgaggaatca atcggggata ttgatactgt cgcgtggctt gcagaggaaa taaggccctc      3720
     ggcactttca attgaggaga tcgaaacaga aaccaaacgt gatgataaac tccaagccgt      3780
     taaggatgct attttctcaa ataactggga tgcggctcca gtggagttta ggactacaac      3840
     gataaaagac gatcttacaa catatggtga gcttattcta cgtggagacc gtatcgttat      3900
     tccgaaacaa ttacaggata aagtcgttca acttgctcat tccggccacc aaggttgtac      3960
     cgctatgaaa gcacaattgc gagcaaaagt gtggtttccg tcaatggata aagcagtgga      4020
     gagttttgtg cgtggttgca aaccttgtaa aatgacaggg cttccggaca gtccaaatcc      4080
     catattgcga cgtgttccat cggaaccatg gcaagatgtt gcgattgatt tcaaggaagg      4140
     tttgtcaggc ggcctctcac tactagttgt agtatgctat acgactaggt tcattcaggt      4200
     ggagcccatg aaaccagcca cgtcccaacg ggtaatagca gcattactgc gaatgttcag      4260
     tgttttgggt attccacgtt caataacagc agacaacggc ccacaattta gggcaatcga      4320
     attttctcgt ttttgtgttt gttatggcat acacctaaac ttatcaacgc catattggcc      4380
     cgaacagaat ggtgcagttg agcgtcagat gcgtaacatc gggaaaagat tgaaaattag      4440
     tgaaatccag ggcacagact ggcaaactga tctgtatgaa tatattacga tgtatcatgc      4500
     aacgccccaa gagactactg gcgtatcacc aggaaaaatg atgctgggtc gcgaaattag      4560
     aacacgcatt ccatcaattc gtacgccata cagtttgcaa tgggaggagg ctcgggacag      4620
     agacatgggg aagaaggagt atcacaaaca aagagctgat gcacaacgtc atgcaaaaga      4680
     acatacgttg gtgagaggag atactgttct aatgcgtaac ttggatccgg gagcactgga      4740
     ttccacgttc agaggagaag aattcgatgt tataaacgtc aataacaacg cagttcaagt      4800
     gcgatcgact gagacggata gagtctactt gcggaacagc tctcatttga agaaactgga      4860
     gaaagatcga gaaatgaaat gtgatcaatc gcaagcgaag gatactgagg atgagagttg      4920
     tacatcagtt gagactgcgg aaacgacatc aaaccatgct gaggaggaaa acatcgccaa      4980
     tgagcgattc tctcaacgta cgcgtaaacg accaagtaag tttcgtgact atgttgttta      5040
     agatggagac gtattcatat gattactgat tgttggcttg aaataaataa aaatgtacca      5100
     aacagcagtg ttgtacacat tttctggaga ga                                    5132
//
ID   Gypsy-14_AA-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_AA_;
KW   Gypsy-14_AA-I; Gypsy-14_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-256
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 998-998 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 256 BP; 72 A; 40 C; 73 G; 71 T; 0 other;
     tgtaacgatg tgtcaaatat cgttactggc tatacaaagg ttattatata agttaatggt        60
     gacacaaggg ttattgtata acagtcagcc tatctgctag ttggaaacgg gctatgattg       120
     tgtttgtgtt gggatcaaca gtagagcgat gtgaaaacgg ggattcgtgt gtaggctatt       180
     gacggagaca gacgtgtcta cggagctcgc ggcgaacgag tagttcaagc atagaaacgg       240
     cccgtcggat tttaca                                                       256
//
ID   Gypsy-14_AnFu-I repbase;    DNA;    INV; 4490 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4490
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2899-2899 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..4427
FT                 /product="Gypsy-14_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPGRDEMLGVLSDAGIAVPPSATVAQIRRLFAEIMGI
FT                 DATPIPDEEPASEAPLTDAPTTCLSAILDASSATPVKRDAAILDASSATLA
FT                 KRDVAILDASSVTPVKCGVAMLDATEAERVDIDSAAKECNPTNKCTQATYD
FT                 DEIRRLQQQLELVDLRRKIQALEHQSECAPPPIADLKLDKTIEPFTGDDDR
FT                 CIIQWLDDLDYTFSLHRVKDADKFVHARRLLKGSAAIVAQSSRALTLEQLK
FT                 EELISTLSVPPTVEAVLRQLRSRRLSPKETALRYVLDMQRIASRAPIPEPE
FT                 LINIILDGLDSPSLTAGMRFMANNVEDLKPMLKKFETIRSRRVPKPTTTSS
FT                 SIPEKVPVSTNRGATQNIIRCYNCSEFGHLKSACSRPNRPPGACFTCFQMG
FT                 HNYKNCPKKVANAAAHPDPIARIAGDDNETLALDELQEVSVSFLKLGKPVV
FT                 VVKGIQSLFDTGSSVSFINESIVPVGLLATLAPSRFRGLGNSRLYTRGQVT
FT                 CRIKFKEVILNHSFIILPENSMAWPIIIGRDILPSFNVSLTYSKNYVSLMQ
FT                 PPRGGIETQNQDSLDVATNEISAIDVYESEIELDVGPTLSSRHSAIVLSII
FT                 KENYLDDSIQCTQLINHKMKINLTHQTPIFTKPRRLSYGERNQVKEIVSKL
FT                 LEEEVIRPSNSPYASALVLVRKKSGEIRMCVDYRPLNKITVRDNYPLPLIE
FT                 TCLEHLSNKKFFSLLDLKSGFHQVQMEESSIPYTSFVTPDGQYEYTKMPFG
FT                 LKNAPSEFQRFINSIFREFIDDEKVVVYLDDIIIASADLQSHLETLQSVLK
FT                 RIKQSGLELRVDKCRFAHEELDYLGYKASASGIRPSDRHIKALRNYPMPLN
FT                 VKQLRRCLGLFSYFRRFVPSFSCIAKPLTQLLQKDAVFSFDANCREAFETL
FT                 RERLIQSPVLAIFNPKRETELHCDASSFGFGAVLLQRQDDKKLHPIAYFSK
FT                 TTSKEEAKLHSYELETLSVIYALKRFHTYVHGLPLKIFTDCNSLVETLKNR
FT                 NGSAKIARWSLFLENYDYTIHYRSGTSMAHVDALSRTEAVGAISELDLDFQ
FT                 LQVAQSRDPSIDSLKRKLEVGPVNGFVLQDGLVYHQSPLYPLQLYVPREMV
FT                 DNVIRHNHEKIGHLATTKTFHTIRQHYWFPQMTVKIENFIKNCIKCIVYSA
FT                 PSRINNRNLFSIPKVPLPFDTIHLDHLGPLPCTGSRKKYVLVIIDSFTKFT
FT                 KLYATATTNTNEVCDALNQYMTYYSRPKRIISDRATCFTSNLFKEFLESHN
FT                 ISHVLNATASPQANGQVERVNRVLRPILSKLSELTDYSDWSSHLRSAEYAL
FT                 NNTVHSSTGFLPSILLFGVEQRGWVLDELREFLESKTEDVSRDLNRLRSEA
FT                 QENIEISQNRNEQYLADRNKPAPKFTVGDLVAIKYTDTSGVNKKLNCRFRG
FT                 PYIIHKILPHDRYVVRDVEGCQHTQMAYDGVLEVDKLRKWATNT"
XX
SQ   Sequence 4490 BP; 1232 A; 1052 C; 953 G; 1253 T; 0 other;
     tctcagaagt gggattcgcc ccgtgctgcc gttgtgtcat cttggtttag atcatgcctg        60
     gccgtgatga aatgttgggc gttctgtcgg atgcggggat tgcggttccc ccttccgcta       120
     ccgttgccca gatccggaga ttgtttgctg aaattatggg aattgacgcc acaccgatac       180
     cagacgagga accagcttcc gaagcgcctt tgaccgatgc tcctaccacg tgcctgtccg       240
     ccattttgga cgcttcgagt gctacacccg tgaagcgcga tgccgccatt ttggacgcct       300
     cgagtgccac acttgcgaag cgtgatgtcg ccattttgga cgcttcaagt gttacccccg       360
     taaagtgcgg tgttgccatg ttggacgcta ccgaagcgga gcgtgttgat atcgatagtg       420
     cggccaaaga atgtaacccg actaacaaat gcacccaggc tacttacgat gacgaaattc       480
     gcagattgca gcaacaattg gagttagtgg atttgcgccg taagattcag gctttggaac       540
     accagtctga atgtgctcca ccaccgattg ctgacttaaa actcgataaa acaatcgaac       600
     ccttcacggg agacgacgac agatgtatca tccaatggtt ggatgacctc gattatactt       660
     tctccctaca tcgtgtgaag gatgctgata aattcgttca tgctcgtcgg ctgcttaaag       720
     gatctgcggc tatcgttgcc cagtcatctc gtgcccttac gctggaacag ttaaaggaag       780
     aactcatctc aaccttgagt gtgccgccca cggttgaagc cgttcttcga caattacgat       840
     cccgtcgtct ctccccaaag gagaccgcct tacgttatgt gttggatatg caacgtattg       900
     ccagccgagc ccccatcccg gaacctgaat tgatcaacat tatccttgat ggtctggata       960
     gcccatctct tactgctggg atgcgattca tggcaaacaa cgtggaagat ctgaagccta      1020
     tgcttaagaa attcgagacc attcggtcca gaagagtccc caagccgacg acgacatcat      1080
     cttcaattcc ggagaaagtt cctgtttcga ccaatcgagg agcaacgcag aacatcattc      1140
     gatgttacaa ctgctcggag tttggacatc ttaagagtgc ctgttctcgc cccaaccgac      1200
     caccgggggc atgcttcacg tgtttccaga tggggcataa ctacaaaaat tgcccaaaga      1260
     aggtcgcgaa tgctgctgct catccggatc caattgctcg tattgcgggt gatgataatg      1320
     aaactctggc attagatgaa ttacaagagg tgagtgtttc ttttctcaag ttaggaaaac      1380
     cggttgtggt agtaaaagga atacaatctc tatttgatac aggtagttct gtaagtttta      1440
     taaatgaatc catagtgcca gttggactcc tggctacgtt agccccttct cgatttcgtg      1500
     gccttgggaa ctcccgactt tatactcgtg gtcaagtaac gtgccgtata aaatttaagg      1560
     aggtgatcct caatcattca tttattatat tacccgagaa ctctatggcc tggccaataa      1620
     ttataggtag agatatactc ccttcgttta acgtcagtct tacgtactct aagaattacg      1680
     tctctcttat gcagccccct cgggggggaa ttgaaaccca gaaccaggat tcactagatg      1740
     tagcaaccaa tgaaatttct gctattgacg tttatgaatc ggaaattgag cttgatgttg      1800
     gccccacatt atcttccagg cattccgcta ttgtcctatc aatcattaag gaaaattatc      1860
     tcgacgattc tattcaatgc actcagttaa taaatcataa gatgaagatc aacctcactc      1920
     atcagactcc tatttttact aaaccccgtc gactctctta tggagagcgg aaccaagtta      1980
     aggaaatcgt atccaaatta ctcgaagagg aagtcatcag accaagtaat tccccttatg      2040
     cgtctgccct ggtgctcgtt aggaaaaaga gtggagagat acggatgtgc gtggactatc      2100
     gaccgctaaa taagattact gtaagggaca actaccctct tccgttgatc gagacttgct      2160
     tagagcatct cagtaacaaa aagttcttca gcttgttgga tttgaagagc ggattccatc      2220
     aggtacagat ggaagaatct tccattcctt acacttcctt tgttacccct gacggtcagt      2280
     acgaatatac aaaaatgcct tttggcctta aaaacgctcc ttccgaattc cagcgtttca      2340
     ttaattcaat cttccgcgaa tttattgatg atgaaaaagt agtggtctac ttggacgata      2400
     ttattattgc ttccgccgat ctccagtccc acctggaaac cctccaatct gttctgaaga      2460
     gaatcaaaca gtctggccta gaactacggg tggataagtg taggtttgcg catgaggagt      2520
     tggattatct aggatataag gcgagcgcct ctggtatccg acctagtgac aggcatatta      2580
     aagccttacg aaactaccca atgcctttaa atgtgaaaca acttagaaga tgcttgggtt      2640
     tattctctta ctttcgacgt tttgttccgt cattttcctg cattgctaaa ccccttactc      2700
     agttactaca gaaggatgcc gtctttagct ttgatgctaa ttgtcgtgag gcttttgaaa      2760
     ctctccgcga gagactcatt caatctcctg tactcgccat ttttaaccca aaaagggaaa      2820
     ccgaacttca ctgtgatgca agctcattcg gatttggagc agtattgttg caaaggcagg      2880
     acgacaagaa acttcatcct atcgcctatt tctcgaaaac aacctcgaaa gaagaagcga      2940
     agctgcatag ttatgagcta gaaacgctct ccgttatcta tgcgcttaag agattccata      3000
     cctacgttca cgggctccct ttgaagatat tcacagattg taattcattg gtcgagaccc      3060
     taaagaaccg taatggatct gcaaaaattg ctcgatggtc tctttttctg gagaactatg      3120
     attacaccat tcattatcgt tccggaactt ctatggctca cgtggatgca ttaagccgaa      3180
     ctgaagcagt aggtgcaatt agcgaattag accttgactt tcaacttcag gtagctcaat      3240
     caagagatcc ttccattgac tctttaaaac gaaaactcga agtcggtcct gttaatggat      3300
     tcgtcttgca agatggtctt gtttatcatc agtctcccct ctatcccctc caattgtatg      3360
     tacctcgtga aatggtagat aacgtcatac gacacaacca tgaaaagatt ggtcatctcg      3420
     caactactaa gacctttcac actattcgtc agcattattg gtttcctcaa atgacagtta      3480
     agattgagaa ctttattaaa aattgtataa aatgtattgt atattcagcc ccctctagga      3540
     taaataatcg taacctattt agcatcccaa aagtaccgct gccttttgac actatacact      3600
     tggaccatct gggtccattg ccctgtaccg ggtctcgcaa gaaatatgtt ctggtcatta      3660
     tagattcttt tactaaattt acgaaattat atgctactgc tacaactaac actaacgagg      3720
     tatgtgacgc actcaatcag tatatgacat actacagccg accaaaacgg atcattagtg      3780
     atcgagcaac gtgttttact tcgaatcttt ttaaagaatt tctagagtct cacaatatct      3840
     cccatgtact taatgctaca gcctctcccc aagcgaatgg tcaggtcgaa cgcgttaatc      3900
     gtgtactccg tcctatacta agcaaactgt ctgagctcac cgactactct gattggagtt      3960
     cgcatttacg atctgccgaa tacgctctta ataatacggt ccatagttcc acgggcttcc      4020
     taccgtccat tctactcttc ggggtcgagc agcggggttg ggtcttggat gaattgcgtg      4080
     aatttcttga gtccaaaaca gaagacgtta gtcgagacct taatcgtctc cgttccgaag      4140
     cacaggaaaa tatcgaaata tcgcaaaatc gaaatgagca atacttagcc gataggaaca      4200
     agccagctcc taaattcacc gtaggagatc tagtagctat caaatataca gacacaagcg      4260
     gtgtcaacaa aaagcttaac tgtaggtttc gcggccctta tataattcac aaaattcttc      4320
     ctcatgaccg ctatgtcgtt agagatgttg agggatgtca acatacacaa atggcctatg      4380
     atggcgttct agaagttgat aagcttagga agtgggccac taatacgtaa atatgattag      4440
     gtatgtagtc aagtagaatt gaggtcaatc ctaagtcagg atagccgagc                 4490
//
ID   Gypsy-14_AnFu-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-276
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2827-2827 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 276 BP; 67 A; 63 C; 52 G; 94 T; 0 other;
     tgtaatatac tgtagtgtca ggtccgcaac cggtatcatt gtgaagagct ttcgaaatgt        60
     cagagtgaat tatgaccatt ggacatgaca gtgtgctgcg caactgtcat gctgaataaa       120
     gatattcgtt attggatcgt tgtacaagca acatcttccg ttcttccgtt cttccgttct       180
     gtcttccgtt cttccgttat accttccgtc tttgttatta ggctaccaaa gcctccttcc       240
     gaaaagttaa atcttccgta atacatccgt attaca                                 276
//
ID   Gypsy-14_AnMe-I repbase;    DNA;    INV; 4676 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4676
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6826-6826 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..4663
FT                 /product="Gypsy-14_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNPADATMDLPTEEEQRRASLGRSGFFNPAVMQQPGT
FT                 SRPHVPSVHEVASHHQLSPNGHLYPPSQLGPASAQPVSAPSQFVQPPSQTG
FT                 SAVVDNAVLLQTLNMMQQQMAQQQQLISKIMAQQISQPVVTPNFNPEQATE
FT                 ALANSIMEFRFDPEAGITFRTWFSRYEELFNEDACRLSDAAKVRLLLRKLG
FT                 AAEHDRYLSFILPLRSSEFSFKETIAKLAVLFDVQESLISKRYKCLQLTRK
FT                 PEEDLLTYACRVNKSCVEFELSKLDEEQLKCLLFVCGLREERDVEVRTRLL
FT                 AKIEDREQITLQQLSEDCSRIAALKRDSAMIQENERQVLALHNKNHTNIFN
FT                 KHTKAKNSSFQHRQFPKRNNVQRYDKQRPPARNTHPSRPCWLCGDRHWVQY
FT                 CGYKSHKCQDCGQIGHREGHCNTANQKGKFRQSPSVETRIVTVNACAVAVN
FT                 RKYVNVLINGKNARLQLDTGSDITIINRSLWQSLGKPPLNACEIRAKTVSG
FT                 ASLPLDGEFEGIVTVGEKTKAATIRVACVNLLLLGADIIDAFDLGSLPMNA
FT                 YCGAVSTATPIAKQLETKFPSVFRGSGLCTKARIKVQVKENTQPTFCPKRP
FT                 VAYAMQEAVNKELDRLEQLGVITPVDYSEWAAPIVVVRKANGTIRICGDYS
FT                 TGLNSALRAHEYPLPLPEDIFAKLAGCKYFSTIDLSDAFLQVEVEEKYRSF
FT                 LVINTHRGLYTYNRLPPGIKIAPAAFQQIIDTMLAGLNGVCGYMDDVIVGG
FT                 KTEVEHDANLYKLLQRIESYGFTIRAEKCSFKTYQILYLGHIIDHQGIKPN
FT                 PEKIAAILNLPAPTDLSGVRSFLGAINYYGKFVPNMRELRYPLDMLLKKDG
FT                 RFEWTFECEKAFKKFKEILSSNLLLTHYDPRAKIVVSADASSIGVGATISH
FT                 VFSDGSVKVIQHASRALTKAETGYSQIDREGLAIVYAVTKFHKMLFGRHFI
FT                 LQTDHRPLLRIFGSKKGIPIYTANRLQRFALTLQLYDFEMEYIQSDKFGNA
FT                 DVLSRLIQNHAKPEPEYVIASLSLEEDLEAVVINAISSFPLTFRDVEIKTQ
FT                 SDPVLRQVYTNIKKGWPTNVSYGSELARYHDRRESLSAVNNCILFGERVVI
FT                 PKLLQKQCLSQIHHGHPGIQRMKALARSYIYWPSMDRDITEWVNSCHACQA
FT                 AAKSPPSTDKTSWPKSSAPWQRLHIDYAGPLKGEWYLILVDSFSKWPEIVQ
FT                 TSNTSSASTIAILRSIFARFGMPMTLVSDNGTQFSSIEFERFCKKSGIIHV
FT                 RTAPYHPQSNGQAERFVDTFKRAMTKIEVDGYTVRESLDIFLQTYRSTPNA
FT                 CLEGSKSPAEIMLGRRPRIPLDLLTPLQNPPQISPTVEEREFCPNQNVYAK
FT                 HYSQNGWRWITGTVLKRQGRVMYLVRAADGKIIRRHIHQLRRRTQEESSTV
FT                 VQPCLPLDVLLEAWNLDRVLNPPAPAPSPPEDLPLSSSISDHQTVPVFPPA
FT                 ASTQTFGKTTTARPRRLYQVQEPRRSSRNRRLPSRFDVYRTF"
XX
SQ   Sequence 4676 BP; 1435 A; 1044 C; 1051 G; 1146 T; 0 other;
     gtggcgacga gaaaagttaa tgtgatcgtt tcgtgttgtt aagtgctgac caatttttaa        60
     ttcgttttgt tcgttttctt ccgtgtcccg ctcacacaca tacacccaca caattgcgcc       120
     accacgtccc aagaagcgca agatgaaccc cgctgatgca acgatggatt taccgacgga       180
     ggaggagcag cgacgtgcat ccttaggccg gtctggattt ttcaacccgg cggtgatgca       240
     acaacccgga acatcgcggc cgcacgttcc ctccgtgcac gaagtagcgt cccatcatca       300
     gttgtctcca aacggacacc tctatccgcc atcgcaattg ggacccgcat cagcgcagcc       360
     ggtatcagcg ccatcgcaat ttgtgcaacc gccatcgcaa acgggctcag ctgtagtgga       420
     taacgccgta ctcctgcaaa cgctaaatat gatgcagcaa caaatggccc agcaacagca       480
     gcttattagt aaaataatgg cccagcaaat aagccagccc gtagttacgc caaatttcaa       540
     tccggagcaa gcaacggaag cattagcaaa ttcaattatg gaatttcggt tcgatcctga       600
     agctggcatc accttcagaa catggttttc ccggtacgag gagctgttca acgaggatgc       660
     ttgtcggctg agtgatgcag caaaagtgcg actgctttta aggaagctag gtgcagccga       720
     gcatgatcgg tatttgtcgt ttatcctgcc cctacgttca agtgaatttt cattcaagga       780
     aacgatcgca aagctcgctg tgctgttcga cgtacaggaa tccttgataa gcaaaaggta       840
     caagtgtttg cagcttacaa ggaaacctga agaggatctg cttacctacg catgtcgtgt       900
     aaataaatca tgcgtagagt tcgagctcag caagctcgac gaggagcagc taaagtgcct       960
     cttattcgtt tgtggattaa gagaagaacg agacgtcgaa gtgcgaacca gattgttggc      1020
     gaaaatcgag gatcgagagc agattacgtt gcagcaactg tcagaggatt gtagtcgcat      1080
     tgccgcacta aaaagagaca gcgcaatgat tcaagaaaat gaacggcaag tactcgcatt      1140
     gcataacaaa aatcatacaa acatatttaa caaacatact aaagctaaaa attcgagttt      1200
     tcagcaccgg caattcccca aaagaaataa tgtccaaaga tatgataagc agcgtcctcc      1260
     cgcacggaac acccatccca gtcgaccatg ctggctttgt ggcgacagac attgggtgca      1320
     atattgtggc tataaatcgc acaagtgcca agattgcgga caaataggac atcgggaagg      1380
     ccactgcaat accgcgaacc aaaaaggaaa atttcgtcag agcccatcgg tggagacacg      1440
     tatcgtcacg gtaaatgcat gtgccgtcgc ggtaaaccgt aagtacgtta acgtactaat      1500
     aaatgggaaa aatgccaggt tacaactcga tacggggtcc gatattacga tcataaatag      1560
     atctctgtgg caaagcttag gcaaacctcc tctaaatgca tgcgagatac gagcaaaaac      1620
     agtttcaggg gccagccttc ccttagacgg ggaattcgaa ggaattgtta cggttggaga      1680
     gaaaacaaaa gcagctacca tccgcgtagc ttgcgtaaat ctcttattat tgggtgcaga      1740
     tatcatcgac gcatttgatc tcggatcgtt accgatgaat gcatattgtg gagctgtttc      1800
     gacagctaca ccaattgcaa aacaattaga aaccaagttt cccagtgttt ttaggggatc      1860
     aggtttatgc accaaggcac gtataaaagt gcaagtaaaa gagaacaccc aaccaacttt      1920
     ttgtccaaag cgcccagtcg cttatgctat gcaagaagct gtgaataagg aactcgacag      1980
     attagagcaa cttggagtta ttacaccggt agactattcg gaatgggcgg ctcctatagt      2040
     ggttgttaga aaggcaaatg gaactataag aatatgtgga gactactcca ccggcctaaa      2100
     ttcagcatta cgggcgcatg aatacccttt accattaccc gaagacattt ttgccaaact      2160
     tgccggttgc aagtatttta gcacaatcga tctatcggat gcatttcttc aggtggaagt      2220
     agaagaaaaa tacagatcgt ttttggtaat aaatacacac cgtggtttgt acacatacaa      2280
     ccgattacca ccaggtataa agattgcacc agccgcattc cagcaaatta ttgataccat      2340
     gctagctgga ttgaatggag tgtgtggtta tatggatgat gtgatagtag ggggtaaaac      2400
     tgaggttgaa catgatgcta atctatacaa actattgcaa cggatcgaaa gctacgggtt      2460
     tacaatacgc gccgagaaat gttcttttaa aacgtaccaa attctatacc taggccacat      2520
     aattgatcat caaggaatta aaccaaatcc agagaagata gcggcaattc tcaacttacc      2580
     agcaccaacc gatttaagtg gcgtaagatc attcttaggt gccattaatt actatggcaa      2640
     gtttgtgccc aacatgcgcg agttaaggta tcctttagac atgctcttaa aaaaggacgg      2700
     aagattcgag tggacctttg agtgtgaaaa agcttttaaa aagtttaaag aaattttatc      2760
     atcaaatttg cttctcacac attacgatcc ccgagccaaa attgttgttt ctgcagacgc      2820
     ctcttctata ggggtcggag caaccattag ccatgttttc tctgatggat ccgttaaagt      2880
     aatacagcac gcatctagag cgctaaccaa agcagaaaca ggctacagcc aaatcgatag      2940
     agagggattg gccatagtat acgctgtaac caaatttcat aaaatgctgt ttgggagaca      3000
     ctttatttta caaacagacc atagaccact gcttagaata tttggttcaa aaaaggggat      3060
     tccgatctat acagcaaatc gtcttcaaag attcgcgctg acgctacagc tttatgattt      3120
     tgaaatggaa tacatacaat cagacaagtt tggaaatgcg gatgtcctgt ctcgtcttat      3180
     acaaaatcat gcaaagccag agccagaata tgtgatcgcg agcctaagcc tagaagaaga      3240
     cttggaggca gtagttatca acgcgattag ttcattcccc ctcacgttca gagacgttga      3300
     gataaaaacc cagagcgatc ccgtactacg acaggtttac acaaatataa aaaaaggctg      3360
     gccaacaaac gtatcgtatg gatcagagct tgcacgttac catgatagaa gagagtcctt      3420
     gtcggcagta aacaactgta tcttatttgg agagagggta gtgatcccca aactgctaca      3480
     aaaacaatgt ttgagtcaga tccatcatgg tcatccgggg attcaaagga tgaaggcctt      3540
     agctagaagc tacatttact ggccatctat ggatcgtgat attactgaat gggttaattc      3600
     gtgtcatgcc tgccaggcag ccgccaaatc acctccaagc accgataaaa ccagctggcc      3660
     aaaatcttca gctccttggc aacgccttca tatcgattat gctggtccat taaagggaga      3720
     gtggtatctt atattagtgg attctttttc aaaatggcct gaaatagttc aaactagcaa      3780
     cacgtcatca gcgtctacaa ttgctattct tcgtagtatt ttcgcacgtt ttggtatgcc      3840
     gatgacgcta gtgtctgata atgggacaca attctccagt attgaatttg aacgattttg      3900
     taagaaaagc ggtattatac acgttagaac ggcgccttac catccacaat caaacggcca      3960
     ggcagagcga tttgtggaca cttttaagcg agctatgacg aaaatcgaag ttgatgggta      4020
     cacggttcgg gagagtttgg acatattctt acaaacttac aggtctaccc caaacgcttg      4080
     tctggaagga tcaaagtctc ccgcagagat catgttgggt agacgcccaa gaataccgct      4140
     ggatttatta acaccattac aaaacccacc acagataagc cctactgtag aagaaagaga      4200
     attttgccct aatcaaaacg tttatgctaa acattattcc cagaatggat ggagatggat      4260
     aaccggtacg gttctgaagc gacaaggtag agtcatgtac ctggtcaggg cggccgatgg      4320
     aaagatcatt cgacggcata ttcatcagct acgtcggcgg acgcaagaag aatcttcaac      4380
     agtagttcag ccttgcttac ctctagatgt tttgcttgaa gcttggaatt tggatcgcgt      4440
     actaaatcca cctgcacctg caccgtcacc accagaagac ttaccgttat cttcaagcat      4500
     cagcgaccac caaacggtac cggtgtttcc tcctgctgca tccacacaaa catttggaaa      4560
     aacaacaact gcacgtccca gaaggctgta tcaggtacag gaaccacgac gctcttctcg      4620
     aaatagaaga ttgcccagtc ggttcgatgt gtaccgtaca ttttaagaga gggaga          4676
//
ID   Gypsy-14_AnMe-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-258
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6851-6851 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 258 BP; 75 A; 55 C; 67 G; 61 T; 0 other;
     tgttatggag gcgtttaggg cgaaacgcga taagtgagcc aacctgcgca aacagttcgg        60
     ctccgactgg ctggtcactc agcgagccga gaggccactc agcacgatcg gaaggacgat       120
     cgtgctctct tggattaagg cggtcgagcg ggacggtcac accaaaaagg gcatttagga       180
     ttaataaatt atattattgt attgtatcgt tttaaataag tacaatatcg ttttagcaag       240
     ccccgcaata tcacaaaa                                                     258
//
ID   Gypsy-14_AnSt-I repbase;    DNA;    INV; 4371 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4371
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 797-797 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..4338
FT                 /product="Gypsy-14_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSKDEMLCALENAKVEVPNTATIPQIRRLFDETCLI
FT                 MSNEESALQQEEDAGSVRGMENKGTTLKMAASKDDGNVAMSANAHPIHGIN
FT                 IERSTNACLNMCVSANSLSLSEAIVYAEGLMDKFSGDNGEDINAWIDQLEH
FT                 TFQMLQMNEIQQLIITRRLLEGTAAMLVKSSTLTGYIEVKKKLTTHFYAKP
FT                 PTESVFRQLRQRKLLQNETTMRYVMEMETIAKQGAIPEQELMSIILDGIGD
FT                 PTNAAAMRFSTTNMDQLRGALQRYEFIRPQMKATTVTPSASRFDPMIKCYN
FT                 CSRYGHHQKDCRQPRRPPGSCFLCHEAGHTIRNCPRRDQTTPAAVQQVGDV
FT                 QTAELRDMVEVYPMQNVSVAFLTHNHARSSFSNVYSLFDTGSPKSFISDEI
FT                 VPNITRNPKQSQYSGLGNGRLTTLGHVECLIRFRRSSVLHSFIIIPSRQTA
FT                 WPMIIGRDLLEKLKVTLCHKRFKYDMNELLEIQVNNKVELPAQICNRLSTL
FT                 GIMKNNLNNLICDSLLSNNVKTDSEIDSESVVFSELCAIDVSTSENKYDVG
FT                 PNLNFDQSVLINSVIQKDYLELPYGMVNKLNHSMKINLTHNTPLFCKPRRL
FT                 SFAERDQVKVIVQDLLKKNIIRPSNSPYASAIVLVRKKNGEVRMCIDYRPL
FT                 NKVTIRDNYPLPLIDTCLEHLSNKQFFSLMDLKSGFHQIEMHEQSIQYTSF
FT                 VTPDGQYEYTKMPFGLRNAPSQFQRFINSVLREYIEQGKLVVFLDDILIGS
FT                 ETFDDHVKTLSAVLTTLRNNGLELRLDKCKFGHNDLDYLGYRVNSKGIHPS
FT                 DHHLKAILNYPVPRNAKEVQRCLGLFSYFRRFVPSFSRIAKPLSNLLKEKT
FT                 PFQFDEDCINAFQELKTKLVESPVLAIFDPKRETQLHCDASSSGFGSVLLQ
FT                 KQDDDKFHPVAYFSKTTSSSEANLHSYELETLSVIHALKRFHQYVHGLHIK
FT                 IVTDCNSLVETLKNRNCSAKIARWALFLENYDYSMQYRPGTTMGHADALSR
FT                 VSMTGAVNDLDIDYQLQIAQTRDPEIIKIKEELENGLSEGFALQDGVVYRQ
FT                 PSADKLLLLVPKQMINSVIRNVHEKIGHLGVDKCCTKISRHFWFPAMRNRV
FT                 DNFIRNCLKCIIYSAPARKNKRNLHSISKSPVPFDTIHIDHLGPLPSLKSK
FT                 KKYLLVVIDAFTKFTKLYPTSSTSTREVCYALNQYFAYYSRPRRLISDQAT
FT                 CFTSKEFQDFLNNRNIVHVLNAVASPQANGQVERVNRIIKPVLSKISDPLD
FT                 HSDWTSKLHIVEYALNNSVHASTQQLPSILLFGLEQRGVVVDELTEFLDEN
FT                 QKNSIDLAECRNTAAQNIIKSQRINLEQFRRKHRPAEEFEEGDLIAIRSTD
FT                 NNFNTNKKLLPKYKGPYVIYKKLTNDRYVVRDVEGFKLTQIPYDNILESDK
FT                 LRHWSISEIEPVVQSESEELSN"
XX
SQ   Sequence 4371 BP; 1385 A; 889 C; 884 G; 1213 T; 0 other;
     actcagaagt gggatcagtt ttccaaaaat atgccctcga aggacgaaat gctgtgtgca        60
     cttgaaaacg cgaaagtaga ggtgccgaat actgctacaa taccgcaaat ccgcagactc       120
     ttcgacgaaa catgtttgat catgtcgaat gaagaaagtg cgctgcaaca ggaggaggac       180
     gccggatcag ttcgcggaat ggagaacaaa ggcacgacgc ttaaaatggc tgcaagcaaa       240
     gacgacggca acgttgccat gtctgcaaac gctcatccca tccatggcat caacatcgaa       300
     cgctcgacca acgcttgcct taacatgtgt gttagtgcga attctctttc attatctgaa       360
     gccatcgttt atgccgaagg tctaatggac aagttctctg gcgataatgg agaggacatt       420
     aatgcatgga tcgaccagtt agagcatacc ttccaaatgc tgcaaatgaa cgaaatccaa       480
     caattaataa taacacgacg attgttggag ggaaccgccg ccatgcttgt taaatcgtca       540
     acgctcaccg gatacattga agtgaagaag aagttaacca cgcatttcta cgcaaaaccg       600
     ccaactgaaa gtgtttttcg ccaacttcgt caacggaaac ttctccagaa tgaaacaaca       660
     atgcgttatg tgatggaaat ggagactatt gctaaacagg gtgctattcc ggagcaggag       720
     cttatgtcga tcatcttgga tggaattggc gacccaacta acgctgctgc aatgcggttt       780
     tctacgacca acatggacca actgcgaggc gctcttcaac gatatgaatt catccggcct       840
     caaatgaaag caacgacagt aacacctagt gcttcccggt ttgatccaat gatcaaatgc       900
     tacaattgct ctcgttacgg acaccaccag aaggattgtc ggcagccgcg ccgccctccg       960
     ggatcatgct ttttatgtca cgaggcaggg cataccatac gcaactgtcc acgtcgtgat      1020
     cagaccactc cggcagcagt tcagcaggta ggagacgtac agaccgcaga acttcgagat      1080
     atggttgaag tttatccgat gcaaaacgta agtgtagctt ttttgacaca taatcatgct      1140
     aggtcctcat tctccaatgt ctattctctt tttgataccg gtagccctaa aagtttcata      1200
     agcgatgaaa ttgttccgaa cattacacgt aatcctaaac aatcacaata ttccggattg      1260
     ggtaatggaa gattgacaac acttggccat gtggaatgtt taattcggtt tcggcgttca      1320
     tctgtcctgc attctttcat catcattcca tctcgccaga ctgcatggcc tatgataatc      1380
     ggacgggact tattagaaaa acttaaagta actctttgcc acaagcgttt caaatatgat      1440
     atgaatgaac ttttggaaat acaagttaac aacaaagttg aattaccagc acaaatttgt      1500
     aatcgtttga gtactttggg tattatgaaa aataatttga acaatttgat ttgcgatagt      1560
     ttgcttagta ataatgtaaa aacagattct gaaattgaca gcgaatcggt ggtattttct      1620
     gagctatgtg ccatagatgt cagcacatca gaaaataaat atgacgtagg acccaaccta      1680
     aattttgatc agtcagttct gataaattcc gtgatccaaa aggattattt agaacttcct      1740
     tacggcatgg ttaacaaact aaatcactcg atgaagataa atttaactca taatacaccc      1800
     ctgttttgta aaccaaggcg tctatcgttt gctgagcggg accaagtgaa agtgattgtg      1860
     caagatcttt tgaaaaaaaa tatcatacgg cctagtaatt cgccatacgc ctccgctata      1920
     gttttagtgc gtaaaaagaa tggtgaagtg cgtatgtgta tagactacag acctttaaat      1980
     aaggtaacaa tacgcgataa ttaccccctg ccactcattg atacttgtct tgagcatttg      2040
     agtaacaaac agttttttag tctgatggat ctaaaaagtg gatttcatca gattgaaatg      2100
     cacgaacaat caatacaata tacatcattt gtgactccgg acggtcaata tgaatacaca      2160
     aagatgccct tcgggttgag gaatgcacct tctcaattcc agagatttat caattcggtg      2220
     ttgcgtgagt acattgaaca gggaaaactt gttgtctttt tggacgacat actcataggc      2280
     agtgaaacat ttgatgacca cgttaaaaca ctcagcgcag ttttaacaac attacgcaac      2340
     aatggtcttg agttaaggtt ggataaatgc aagttcggtc acaatgatct tgactatctc      2400
     ggttatcgag taaattccaa gggtatccat cctagcgatc atcatcttaa ggcaatactc      2460
     aattatccag ttccccgcaa cgctaaggaa gttcagcgct gccttggcct attttcatat      2520
     tttcgacgtt ttgtgccttc tttttctaga atcgctaaac ctttgagtaa tttactaaag      2580
     gagaagactc cttttcagtt tgatgaggat tgcattaacg cttttcagga attaaaaaca      2640
     aaattagtgg agtctcctgt tttggccatt ttcgacccca aacgagaaac acaactccat      2700
     tgcgacgcta gctcgtcagg atttgggtct gtattgttgc agaaacagga tgatgataaa      2760
     tttcaccctg tggcatactt ttcaaaaaca acgtcttcgt ctgaagctaa tttgcacagt      2820
     tacgaattgg agaccctatc ggtgattcac gcacttaaac gtttccatca atatgtgcat      2880
     ggtcttcata taaaaattgt aactgactgt aattcgctag ttgagacatt aaagaaccga      2940
     aactgctctg caaagatcgc gagatgggcc ctgtttttag agaattatga ttattcgatg      3000
     caatatcgcc ctggtactac tatgggacat gcagacgctc ttagtcgcgt atcaatgact      3060
     ggtgctgtga atgacttgga tattgattat caacttcaaa ttgctcaaac acgtgaccct      3120
     gaaattatta agataaaaga agaattagaa aatggtttgt ctgaagggtt tgctcttcag      3180
     gatggagttg tataccgtca accctctgcc gacaagcttc tgttgctagt accgaaacaa      3240
     atgattaaca gtgtcatacg gaatgtgcat gaaaaaattg gtcatttggg agtagataaa      3300
     tgctgtacga aaataagtcg acacttttgg ttccccgcaa tgcgaaaccg tgtggataac      3360
     tttatcagaa actgtttgaa atgcattata tattcagcac ccgctcgtaa aaataagaga      3420
     aacctccaca gtatttccaa aagtccagta ccgttcgata ccatacacat agaccatctt      3480
     gggcctctcc cttctttaaa atcaaagaaa aagtatttat tagtcgtcat agatgctttt      3540
     acaaaattca ccaaacttta tcctacgtct tctactagta cccgagaagt ttgttatgca      3600
     ttaaatcagt actttgctta ctacagtcgt cctaggcgat taataagtga tcaggctacc      3660
     tgttttacat ctaaagagtt tcaagatttc ctaaataacc gaaacattgt tcatgttttg      3720
     aatgcagtcg cgtctcctca agctaatgga caggtcgaac gggtgaatcg aattatcaaa      3780
     ccggttctta gtaaaatttc cgacccactg gaccatagtg attggacttc caagttacac      3840
     atagttgagt atgctttaaa taactcggta cacgcttcga cacaacaact tccatcaatt      3900
     ttgttattcg gattagaaca aagaggtgtt gtggtagacg aattaacaga gttccttgac      3960
     gaaaatcaaa agaatagtat agacttagct gagtgtcgaa atacagctgc tcaaaatata      4020
     attaaatcgc aaaggattaa cttagagcaa tttagaagaa aacatcgtcc ggcagaagag      4080
     tttgaggaag gagatttgat agcaataaga agtacagaca acaacttcaa tacaaataag      4140
     aagcttctgc cgaaatacaa gggcccgtat gttatttaca aaaaactcac taacgacaga      4200
     tatgtagtcc gggatgtcga aggttttaaa ctaactcaga taccatacga caacatttta      4260
     gaatcagata agttgagaca ttggagtatt tcagagatag aacccgttgt tcaatcagaa      4320
     tcagaagaat tatcaaattg aggacaattt tgtaatcagg aaaggccgag c               4371
//
ID   Gypsy-14_AnSt-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-182
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 810-810 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 182 BP; 63 A; 31 C; 33 G; 55 T; 0 other;
     tgtaaacata tgcgaataag catactgtat gattaggtca gcaaacgtca actgtcaaac        60
     gttcgataca tgtacaaacc tggatgtata ataaaactga cagattatcg tcactacaag       120
     attggcggac aaacagacaa cacgttattt tgattatctt tgtgctttgt ggatttatta       180
     ca                                                                      182
//
ID   Gypsy-14_BTa-I repbase;    DNA;    INV; 7533 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7533
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 678-678 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other. 3'-end is
CC   indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(427..1905,1893..2984)
FT                 /product="Gypsy-14_BTa-I_1p"
FT                 /translation="MALIYIIYNNTKYKVKCSSLVQTIVDTFADETDKAYW
FT                 NNAEFCGLVRSLPKKAIIRFLQQSTSDEISPSGIVQFEEESVDSQAPIINK
FT                 TIPTPFLFNDKGTIKNCSSLNTAALKIAFKEFHQITYNFANIEHARKLLAK
FT                 LEKDRSIKRLKENSLQRQEMENKKSILQPLKLELPQFDGSSDAEDYIHKLE
FT                 TISKVGEWSDTQKISALIMGLIGNAGLWYRNNETILCLKNWPELKQEFLNN
FT                 FRKIKSIGDDWVIFTNRRQTYNKKPQEYLENKVFLARNLKPKIPEGELIDW
FT                 IIGGMLPHLAQQIYLLNNDNIEDLKNNLSKVIKSFEISGNPSETSKNHSNS
FT                 MIKSEENSRLEKIEQMMQQLIIDKDLRRNSFRGRSPEKSLRYGARNGSRNQ
FT                 SPYRSKPPGQPQRWSRPPERYGYYGNGSYRGHSRGQFSFNFNQRHRGNARK
FT                 FRFRSPSRNYRDYSRSPPRYHRYGGSSNNKGEEYEPKKYYGKNNKRGNQTG
FT                 KLKDSTRYKGPARRVSKTGSKYNLSHKHSVAQGNQDSRYKLNRETPKQEKN
FT                 VSFNTEKFKQVNGSVLEYDKNTIKICNFYSLNKLSVGIRSSLSILGKVNGK
FT                 QSRIIFDTGSTISALDAKLASNLKINKCNDVIFGADRGKIDNLGTARINVC
FT                 ISGVNFPVVVKIIRNLSVNLILGMDFAEKFSADLDYDAGRLKLCTPKAENV
FT                 EIPMSWSSENQGVNIRSAGSDLTDCCAALHMVAKVNNQRLKVLLDSGSCCN
FT                 VIDRRFVRRQDIFRTEQVQSLTTANNHSLKIIGVTELRIEINGTIFEDLAF
FT                 VAENLSASVILGNHFFEKHSAKIITSKYCNIKFKTRRNAGSNILRTSVAKA
FT                 KKKE"
FT   CDS           join(3013..3546,3429..4022,3949..6237,6241..7530)
FT                 /product="Gypsy-14_BTa-I_2p"
FT                 /translation="MDSGFQELSMLYQAFQEIEEGTCDVTVANATFLPPFQ
FT                 SRRVKLRIGRNIDAREGYLSFIKPYQKHKQLVFQDGVIENKKYVTIIVSNK
FT                 SHEQFYLEKFEKIGTFERVNILPVEKINQVQLLNESLRNKVEEMIETKTLN
FT                 GNQRSEQPTYSQNFKIASTGQGKSFWQVKLNTPPSDLRLWKPAKRAADLLT
FT                 EFQDCFHWPGKKFLAGKIKHPPVGFKVIDNTPVKVPPFPSGKKQRELIDEY
FT                 VADLKNSEAVAPSTGAYSSPLILVAKKEKGKYRVCVDFRRCNEKIESQIFP
FT                 IPRITDIISSLNGAKFFSSIDMSNGFFQLAVKPECQDFLSFSSHRENLKFT
FT                 CLPMGLKVSPAIFQRFINETFSSMLFNRTISLPVLQSFKDLSMRPFHQCFL
FT                 TELLVYLDDVLLKSMDFESHLASLRKFLTICREKNIKLNYAKCKFFCDKVK
FT                 LLGFNVSREGITPDESKIEVIKKYESPKTFKQLKSILGLFSFYRSHIGGFS
FT                 QEKKRKERKCREKGRRKGEAKKGEKGIAEPLLKLLRASNKQPKPKFCWSAE
FT                 AEEAFKVLKQKLISKPLLMHYNGDLPVDIHCDASDYAIGSIFNHRTKDNKL
FT                 HSVFFASRTLTKAERFYSVSEKELLSVVFSVQKWKEFLFGIRFKVVTDHSA
FT                 LTKATKIDSKTGRLSRLAYKLQGFDIEWKFCPGIKNKGADCLSRYFPEEEI
FT                 EEKVPTKDTAQLNLRRIINTINFNSLGEQQRKDKNLQGIFKALETPEKCTS
FT                 LEKRRAAQFRIINKTLYKVTERTDRDLLAVIPQSMKREVMKKVHCDSIDGG
FT                 HIGQYKSIRKLISFYYWQGMHADMRNFVKTCRTCLFSKNRSGPELGKIHSH
FT                 QVPVRLFAKICMDLFGPLAASTSLAYPGCKYIISCTDYLTSFVYLKPVKTA
FT                 ESRHVVQFLLELCSLFGCPEEIQTDLGSHFIANEVIELLAQLGIKPTYSAA
FT                 YNPKANSKTERTFSFIGNVLRSYCKLDTKDWADFALTAMTSHNSSVNRTTG
FT                 YTPHKLLFGYDYRGPLETALRPQCKDASLQERLDEINEHRKIALRLIKKAQ
FT                 HEQEDYRNRNVKPSPFKISDKVLIYDPEIGKTKHGKLKIKYKGPFVVQKIV
FT                 NRSMVEVEEESSKKKQIVHVNRLKYFYSNKDYDIYFCCCRKMVKTMARTLY
FT                 ICILLVTTTTSVTITPLNNTVIFERQGDLVLASHIWSVDVLFNISKIKEEK
FT                 VELMINVYQLRKSVLQYDDQSENKGRFGALLQSLQQSITGIDKGIQSLITL
FT                 GTSSKRRYKRSFNTGEKIIKFLLGNPDHEDRKQLFKSINNLNFEEEQMKIE
FT                 EKNLRLKITNTEGTLTSALNLLKDMGRNITIFNSEFQDRVNENFQNISVNL
FT                 HKLKHENIIELELSALIYYLLEVQTAINQIYESIQTSLNHKLSPNLIGPEV
FT                 LEKILSTIEKSLPGSLKLIDFGENMLQQYFHLISVNTIFKGGELIFSLKIP
FT                 IANVNSVLELFKIVPVPQFVEGTNLSVSWECAPYFVINSQRELYATMSEEQ
FT                 ILQCNDLGLIVCKLELPLATASDPTCEYSMLMEEDGKLCDRSVKIGNDEIG
FT                 RG"
XX
SQ   Sequence 7533 BP; 2688 A; 1218 C; 1512 G; 2115 T; 0 other;
     atggtgaagg cgccttgacc cctcaacctc tcgctgaacc ctccttttac ctaccgtgta        60
     tcgcaacggg tgcagaatac gtcgattttt ttttagtaac ctgtacttat gtaacatgag       120
     attagtagac agcttaatga gtgaatttcc ccttgtggaa agtctcattt atttggacgc       180
     agatattcga actaacaaaa aatccgtggc cgagatagta gatacttttg aatatattgt       240
     ttttaggaat cattataact cacaattcga aaaaaaactt gttcaatccg caaaagagga       300
     atataacatt gtaagattat ctttaagtga gaaatttgat ttaattaaag aatttttgca       360
     atttttcttt gaagatggta tcgaagaagc tttacattgt tagctaagaa tggtccttta       420
     tgttctatgg cgctcattta tattatttat aataatacta aatacaaagt aaaatgttca       480
     tcattggttc agacaatagt cgatacgttc gcggacgaaa ctgataaagc ttattggaat       540
     aatgcggaat tttgcggtct tgtgcgttct ttacccaaaa aagcaataat tagatttttg       600
     caacagagta ctagcgatga aatatctcca tcaggcattg tacaatttga ggaagaaagc       660
     gtggactctc aggctcctat aattaacaaa actattccaa cacctttttt gtttaatgac       720
     aaaggcacta ttaaaaattg ttcgtcacta aacacagctg cattaaaaat agcatttaaa       780
     gaatttcatc aaattacgta taacttcgca aatatagaac atgctaggaa actactagca       840
     aagctcgaga aggacaggtc tataaagaga ttaaaagaga attcattaca gagacaagag       900
     atggagaata aaaaatctat tcttcagcct ttgaagttgg aacttcctca gttcgacggt       960
     tcctctgacg cggaggatta tatccataaa ttagaaacta tttctaaagt tggggagtgg      1020
     tcagatactc aaaaaatcag tgcattaatt atgggcttaa taggaaatgc tggcttatgg      1080
     tacagaaata atgagactat attatgtttg aaaaattggc ccgagttaaa acaggaattt      1140
     ttaaataatt ttcgtaaaat taaaagtata ggggatgact gggtgatttt caccaacaga      1200
     aggcaaacat ataataaaaa accacaagaa tacttggaaa ataaagtgtt tctggctagg      1260
     aacttaaagc ctaaaattcc agaaggagag ctaatcgact ggatcattgg aggtatgttg      1320
     ccgcatttag ctcagcaaat ttaccttctt aataatgata atattgaaga tctgaagaac      1380
     aacttaagta aagtaattaa atcttttgaa atcagtggaa atccaagtga aacttccaaa      1440
     aatcacagta actccatgat taaatccgag gagaattcta ggctggaaaa aatagagcaa      1500
     atgatgcaac agttaataat tgataaggat ttacgtagaa atagctttcg gggaagatca      1560
     ccagagaaat ccttgagata cggggcgaga aatggatcga gaaatcagtc accctatagg      1620
     agcaagcccc cagggcaacc tcaaagatgg tccagacctc ctgaacggta cggttattac      1680
     ggaaatggat cttatagagg acattcaagg ggtcaatttt cttttaattt caatcagagg      1740
     caccgtggga atgcgcgaaa atttagattt agaagtccaa gccgtaatta cagagattat      1800
     tcgaggagcc ctccaaggta tcatagatac ggagggagca gtaacaataa gggagaagag      1860
     tacgaaccta aaaaatatta tgggaaaaat aacaaacggg gaaactaaaa gactcgactc      1920
     gatataaagg ccctgcgaga agagtgagca aaacagggtc taagtataat ttaagccata      1980
     agcattctgt agcacagggt aaccaggatt ctcgatataa actaaacagg gaaactccca      2040
     aacaagaaaa aaacgtttcc tttaatacgg aaaaatttaa acaagttaat gggtcagtcc      2100
     tggagtatga caaaaatacg ataaaaattt gtaattttta ttccttaaat aagttatcgg      2160
     tagggattag gtctagccta agtattttag gaaaagtaaa tggaaagcaa tcgcgaatca      2220
     ttttcgacac gggcagtacg atctcagcct tagacgcaaa gttggcgtcg aatctcaaaa      2280
     taaacaaatg taatgatgta attttcggcg ccgatcgcgg aaaaattgac aacttgggca      2340
     cagctcgaat caatgtttgt atttcaggtg taaactttcc ggtagtagtc aaaataatcc      2400
     ggaacttatc cgtcaacttg atcttgggca tggatttcgc tgaaaaattt tccgcagact      2460
     tagattatga cgcaggtagg ctgaaattat gcacacccaa ggccgaaaat gttgaaattc      2520
     caatgtcatg gagttcggaa aatcaaggag taaacatccg ttccgcgggc agtgatctga      2580
     cggattgttg cgccgcgttg catatggtag caaaggtaaa taatcaaaga ttaaaagtgc      2640
     tactggattc ggggagctgt tgtaatgtta tagatagacg cttcgtaaga agacaggata      2700
     tttttcgtac cgaacaagta caatcgctaa caactgcaaa taatcattcc ttaaaaatta      2760
     taggcgtaac ggaattgcgc attgagatta atggaactat ttttgaagac ttagcatttg      2820
     ttgccgaaaa tttgtcagcc tccgtgatcc taggcaatca cttttttgaa aaacattcag      2880
     ctaaaattat tacttctaag tactgcaaca ttaagtttaa aacacggaga aacgcgggct      2940
     ccaatattct ccgaacttca gtggcaaagg cgaagaaaaa agagtaaaat agaacaggat      3000
     agggaagtaa ccatggattc aggctttcag gaactttcaa tgctttatca agcgtttcaa      3060
     gaaatagagg aaggtacttg cgatgtaacc gtagcaaacg ctaccttttt acctccattt      3120
     cagtctcgca gagttaaact caggataggc agaaatattg acgcccggga aggatattta      3180
     tcgtttataa aaccctatca aaagcataag caactagttt ttcaagatgg agtcatagag      3240
     aataaaaaat acgttactat cattgttagt aataaatctc acgagcaatt ctacctcgaa      3300
     aaatttgaaa aaataggcac atttgagaga gttaatattt tgccagtcga aaaaattaat      3360
     caggttcaac ttttgaacga atccttaaga aataaagtcg aggaaatgat agaaacaaaa      3420
     actcttaatg gaaaccagcg aagcgagcag ccgacttact cacagaattt caagattgct      3480
     tccactggcc agggaaaaag tttctggcag gtaaaattaa acaccccccc gtcggattta      3540
     aggttataga taatacaccg gttaaggtac ctccatttcc ctcaggtaag aagcaaagag      3600
     agttaatcga tgagtatgtg gccgatctga aaaattcaga agcagttgcg ccatcaacgg      3660
     gcgcgtactc ttcacctcta attttggttg caaaaaaaga gaagggtaaa tatagagtat      3720
     gtgttgattt cagacgttgt aatgagaaaa ttgaatctca aattttccct atccctagaa      3780
     ttacggatat aataagcagt ttgaatggtg caaaattttt ttcaagcata gatatgtcta      3840
     acggattttt tcaactggcc gtaaagccag aatgccagga tttcttgagt tttagtagcc      3900
     acagggaaaa cctaaaattc acttgccttc caatgggatt gaaagtgagt cctgcaatct      3960
     ttcaaagatt tatcaatgag accttttcat caatgctttt taaccgaact attagtttac      4020
     cttgacgacg ttctgttaaa atcaatggac ttcgaaagtc acttagcaag ccttcgtaaa      4080
     tttctaacaa tatgtcgcga gaaaaatatt aaattaaatt atgcaaaatg taagttcttt      4140
     tgtgataaag ttaaattatt gggatttaat gtctccagag aagggataac tccggacgaa      4200
     tcgaaaatag aagtgattaa gaaatatgag tcacctaaaa cgtttaagca gttaaagtct      4260
     attttgggtc ttttttcatt ctacagatct catattggag gattttcgca agaaaaaaag      4320
     agaaaggaaa ggaaatgcag agagaaagga agaaggaaag gagaagcgaa gaaaggagag      4380
     aaaggaattg cagagccgct tttaaaacta ttaagggcat cgaataaaca acctaaacca      4440
     aagttttgct ggtcagcaga ggcagaagaa gcttttaaag tgctgaagca aaaattaatt      4500
     tctaaacctt tgttaatgca ttataacggg gatttaccgg tggatatcca ctgtgacgca      4560
     agtgactatg cgattggaag tatttttaac caccgaacta aagataataa actgcattca      4620
     gtattctttg caagtcgaac gttaacaaag gctgaaaggt tttactcggt cagtgaaaag      4680
     gagcttcttt cagtagtatt ttcagtacaa aagtggaaag aatttttatt tggtattcga      4740
     tttaaagttg taacggacca ctctgccttg accaaagcca caaaaattga ttctaaaact      4800
     ggtagacttt ctaggttagc ttacaaactt caagggtttg atattgagtg gaaattttgt      4860
     ccaggtatta aaaacaaagg agctgattgt ctgtcgcgct attttccgga agaagaaatt      4920
     gaagaaaaag tgcctactaa ggatacagcg caattaaatc taagacgaat aattaacaca      4980
     attaatttta attctttggg tgaacagcag cgtaaggata aaaatttgca aggtattttt      5040
     aaagcgctag aaacaccaga aaaatgtact agtttggaga agcgcagagc cgcacaattt      5100
     cgcataataa acaaaactct ttacaaagta actgagcgga cggatcgaga tttgctggcg      5160
     gttattccgc aaagtatgaa acgagaagta atgaagaaag ttcattgtga cagcattgat      5220
     ggtggtcata ttgggcaata taaaagtatt aggaaattga ttagttttta ttattggcaa      5280
     ggaatgcacg cagatatgcg aaattttgtg aagacttgta gaacttgtct tttctcgaaa      5340
     aacaggtcag ggcctgagtt aggcaaaatt cattctcatc aggtccctgt tagactgttt      5400
     gctaagatct gcatggattt atttgggcct ttagcagcat ccacttctct tgcgtaccca      5460
     ggatgcaaat acatcatttc ttgtacagat tatttgacct cctttgttta cttgaaacca      5520
     gtaaaaacag cagaatcaag gcatgtagta caatttttac tggaactttg ctcacttttt      5580
     gggtgcccag aggaaatcca aacagatcta ggaagccatt ttatcgcaaa tgaagtaata      5640
     gaattactcg ctcaactagg aattaaaccc acctacagtg ctgcgtacaa tcctaaagca      5700
     aattctaaaa cagagagaac atttagtttt atcgggaacg tgttgcgatc gtattgtaaa      5760
     ctggacacta aggattgggc ggactttgca ttgacggcta tgactagtca taattcctct      5820
     gttaaccgaa ctacgggata tactcctcac aagttgttat tcggatatga ttacagagga      5880
     ccattggaga ctgctttaag gccgcaatgt aaagacgctt cactccaaga aaggttggat      5940
     gaaataaacg agcatagaaa aatagcgtta aggctcatta aaaaggctca gcatgagcaa      6000
     gaagactatc gaaatagaaa tgtaaaacca tcgccattca aaataagtga caaagttcta      6060
     atttacgatc cggaaattgg taaaacgaaa cacggaaaat taaaaattaa atataaagga      6120
     ccattcgttg tccaaaaaat tgttaatagg agcatggttg aagtggaaga agaaagttca      6180
     aagaaaaaac aaatagttca tgtaaataga ctaaaatatt tttatagcaa taaggattaa      6240
     tatgatatat atttctgctg ttgcaggaaa atggtaaaga cgatggcacg aactttgtac      6300
     atctgtattc tcttagtaac cacaacaaca tcagtcacca taactccctt aaataatact      6360
     gtcattttcg agaggcaggg agatctagtt ttagctagcc acatttggtc ggtagatgtc      6420
     ctctttaata tttcaaaaat taaggaagag aaagtagaat taatgataaa tgtttatcag      6480
     ctaagaaaat ctgtcttaca atatgatgat caaagcgaga ataaggggag atttggtgcc      6540
     ttgttacagt ctctacagca atcgatcacg ggaatagata aaggtatcca gtccttaatt      6600
     acgttaggaa ctagcagtaa gcgcaggtat aaaagatctt ttaataccgg tgaaaaaata      6660
     attaaatttc tgttaggcaa tcctgatcac gaggatagaa agcaactctt caagtctatc      6720
     aataatttaa attttgagga ggagcaaatg aaaatcgaag agaaaaattt aaggcttaaa      6780
     attacaaaca ccgaagggac tctaacgagt gcacttaatc ttctcaaaga tatgggtaga      6840
     aatataacga tttttaattc agaatttcag gaccgagtta acgaaaactt tcaaaatatt      6900
     tctgtcaatc ttcataagtt aaaacatgaa aatataatag aactggaact atcagctttg      6960
     atctattatt tgttagaagt tcaaacagca atcaatcaaa tttatgagtc gatacaaact      7020
     tcattgaatc ataaattatc tccaaattta atcggtccag aagtcctcga gaaaattttg      7080
     tcgacaatag agaaaagttt gcctgggtct cttaagttaa tagattttgg tgagaatatg      7140
     ttacaacaat actttcattt aatatctgta aataccatat ttaaaggcgg agaattaatt      7200
     tttagtctaa aaataccgat tgcgaatgta aatagcgtac ttgaattatt taaaattgtt      7260
     cctgtgccac agttcgtgga aggaactaat ttatctgtct cttgggaatg tgccccatat      7320
     tttgtaatta attcacagag agaactttat gcaacaatga gcgaagagca aatacttcaa      7380
     tgtaatgatc taggattaat cgtctgtaag ttggaattgc ctttagcaac tgcaagcgat      7440
     ccgacttgcg aatactcaat gttgatggag gaagacggaa aattatgtga taggtctgtt      7500
     aaaataggta atgacgaaat aggtaggggg ggg                                   7533
//
ID   Gypsy-14_BTa-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-318
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 688-688 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 318 BP; 69 A; 79 C; 77 G; 93 T; 0 other;
     tgttgtgact cgttcattgt cggtgatttc aagcgagata tggcattgtt gattgttgat        60
     agtttgtggc cgtgcacctc gcttgacgtc attggcattg agcggggcct agtgctcgtc       120
     tttataaaag gaagcaccgt ctgttccggg ctcgtctagt ctattcgagt tcatcatcta       180
     gctcaccgac acctcgagtt tggtagccag cctgagtgtg tcaggagagc atactgtaag       240
     tagcctcatt agcagctaat acaaatgtcg ccatagcacc tacggtagcc tccttattcc       300
     aacccctagt ccacaaca                                                     318
//
ID   Gypsy-14_CFl-I repbase;    DNA;    INV; 3956 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3956
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1034-1034 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           32..832
FT                 /product="Gypsy-14_CFl-I_1p"
FT                 /translation="MENEAREIVHKVAVKIPPFWSDEPELWFAQLEGQFVL
FT                 SGITQDSTKYSYVLSQLDXRQIKEVKDIITQAPEADKYETIKRALIQRMSI
FT                 SQEQRTRQLLELEEIGDRKPSQFLRHLRTLAGENVPDSLLRTLWLGRLPNQ
FT                 MQMILATRTEDRLTEVAEQADRIHEMSSRAIVAVTDAPKQKGPNPTLEKQI
FT                 QALAKQVATLTTRLSRGRTREKDLDRRSRNRSRSRSQATNKEYNKNYCFYH
FT                 NRFGEKAKKCTQPCTYKDSEKDQGSH"
FT   CDS           882..3752
FT                 /product="Gypsy-14_CFl-I_2p"
FT                 /translation="MSNNQGTFPRRHRLRRKRISPLDDSRTLPTNYELFAA
FT                 NGSLITTYGWITLQPNLGLRRSFPWRFVIANVTSPIIGADFLSYYHLLPDL
FT                 QKGVLVDGKTELHIKGTAETGSIESIKVLAIENKYHRILAEFPEITRATTR
FT                 ARTIKHSTVHHIVTTEGPPEACRPRRLDPNKLKAAKAEFNLLLREGVIQAS
FT                 KSPWSAPLHMVQKKENAWRPCGDYRRLNARTVPDRYPIPHIEDFSQTLHNK
FT                 KFFSTLDLVRAYNQIPVHPNDIPKTAITTPFGLLEFRYMPFGLRNVAQTFQ
FT                 RFINEITSDLEFCYAYIDDILVASSNEEEHEEHLRKLFKRLEENGILLNPT
FT                 KCIFGARQVLFLGYEVSEKGTRPPPDRIKAIKSFPKPQNIQQLRQFLGTLN
FT                 FYRRFIPDAAKEQVLLNDVLSGPKIKKKSPITWNEELDEAFQKCKESLARA
FT                 TMLAHPKPEAEITLTTDASDRAMGAVIQQRVGEEWQPLAFFSKKFNPAQQK
FT                 YSPYDRELLAIYAAIKHYRHMLEGRDFTIFTDHKPITYAFQQDPLHSSPRQ
FT                 TRHLQYIGQFTTDIRHISGKDNTIADALSRVEKIQESVNLEDLAKAQEDDT
FT                 ELQELVNKDSALKLQKIQIPGTNSTLYCDTTTPIARPFVTKEYRRQVFQSL
FT                 HSLSHPGTKATAKLVAERYVWPRIKADCHQWTRACINCQRAKVQRHNRTPL
FT                 GSFKNPSKRFEHIHIDLVGPLPISKGYRYCLTVIDRFTRWPEAIPVTDISA
FT                 ETVAQNLFTHWIARFGTPVRITTDQGRQFEADLFRQLTKITGTTHMHTTAY
FT                 HPAANGMVERLHRQIKTAIKCHATEAWTEILPVVMMGIRAAFKEDLHATPA
FT                 ELVYGEAIRLPGEFLQESQDTTENSNDFILRLKQTMKKLRPQPVKKRHGTP
FT                 AIFEYKDLEKASHVFLRHDAPTRALQPRIAARMKSSTEQKRSISYGSTRKP
FT                 ST"
XX
SQ   Sequence 3956 BP; 1383 A; 1017 C; 811 G; 737 T; 8 other;
     aattggtgac cccgacacac ackgtagtaa gatggaaaac gaagcaagag aaatcgttca        60
     taaagtagca gttaagattc cccctttctg gagtgacgag ccagaattat ggttcgcaca       120
     actagaggga caattcgtac tcagcggcat aacacaggac tctacaaaat actcctatgt       180
     cctmtcccaa ttggatkmac gccaaataaa agaagttaaa gatataatta cgcaagcccc       240
     cgaagcggat aaatacgaaa ccataaaaag agctctcatt cagcgaatgt caatctctca       300
     ggagcagcgg acgcggcagt tactagagct cgaagaaatc ggcgatcgca aaccctcgca       360
     atttttacga cacctgcgca cattagcagg ggaaaacgtg cctgattctc ttttaagaac       420
     actktggctt ggtagacttc ccaatcaaat gcaaatgatt ctcgcaaccc gcactgagga       480
     tcgcctcacc gaagtagctg aacaagccga ccgcatccac gaaatgtcat caagggccat       540
     cgtagcggta actgatgccc ctaaacaaaa aggacctaac ccaacattag aaaaacagat       600
     tcaagcatta gcaaaacagg tggcaaccct aaccacacgt ctttcaagag gaagaacgag       660
     ggaaaaagac ctggacagga ggagccgaaa ccgaagccga agccgaagtc aagctacaaa       720
     caaagaatat aataaaaatt actgcttcta ccataataga ttcggcgaaa aagctaaaaa       780
     atgcacacag ccatgcactt acaaggactc ggaaaaagac cagggcagcc actaatggcg       840
     gccagtggct ccgccccaag accccgccgc ctccatgtaa catgtcgaac aaccaaggaa       900
     cgtttcctcg tagacacagg ctccgacgta agcgtatatc cccgctcgat gacagcagga       960
     cattgccaac gaattatgag ttattcgcag caaatggttc tctgatcact acatacggwt      1020
     ggatcacgct acaaccaaac ttaggactac ggcgttcatt cccatggcga ttcgtcatag      1080
     caaacgtcac atcacccatt atcggagcag acttcctaag ctactaccac ctcctgccgg      1140
     acttacaaaa aggagtactg gtggacggga aaacagagct acacatcaag ggtacggcag      1200
     agacaggatc cattgaatca ataaaggtac tggcaatcga aaacaagtat catcgcatcc      1260
     tcgcagaatt tcccgagatt acaagagcta cgactagagc acggaccatc aaacactcca      1320
     ccgtgcacca tatcgtaact acagagggac caccggaggc atgccgccct cgtcggctag      1380
     atccgaataa actaaaggca gcaaaggcag agttcaacct cctactacga gagggagtta      1440
     tacaagcatc aaaaagccct tggtcagccc ctctacacat ggttcagaaa aaggaaaacg      1500
     cgtggagacc gtgcggagac tacagacgcc ttaacgcaag aacagtgcca gaccgctacc      1560
     cgattccgca tatagaagat ttctcacaga ctctccataa caagaagttt ttctcaacat      1620
     tggacctagt tcgagcatac aatcaaattc ctgtgcatcc aaacgatata ccaaaaacgg      1680
     caattactac tcccttcggt ctccttgagt tccgctacat gccgttcggt ctacgtaatg      1740
     tggcacagac attccaacgc ttcataaacg aaattacgag cgacttggaa ttctgttacg      1800
     cctacattga tgacatcctg gtggcctcca gcaacgaaga ggaacatgaa gaacatctac      1860
     gcaaactctt caaacgatta gaagaaaacg gcattttact aaaccccacc aaatgcatct      1920
     tcggagctag acaagtactc ttcctaggat acgaagtttc agagaaaggg acacgacccc      1980
     cgccagacag aatcaaagca ataaaaagtt ttcctaaacc acagaacata caacaattac      2040
     gccaattcct gggaacactg aatttctatc gtagattcat ccccgacgct gcaaaggaac      2100
     aagtattatt aaacgacgta ctcagtggtc cgaagattaa aaagaaatca ccaattactt      2160
     ggaacgaaga gttagacgag gccttccaga aatgcaaaga gagccttgcc agggcaacka      2220
     tgctggcaca ccccaaaccc gaagcagaga tcacactcac aacagacgct tctgacagag      2280
     caatgggtgc tgtaattcaa caacgggtcg gagaagaatg gcagccatta gccttcttca      2340
     gcaaaaagtt caatccagca cagcaaaaat acagccctta tgatagagag ctattggcga      2400
     tttatgccgc cattaagcat taccgccata tgctcgaagg aagagacttc acaatcttca      2460
     cggaccacaa accaatcaca tacgcctttc agcaagaccc actgcatagc tcaccaaggc      2520
     agacgagaca cctacagtat attggacaat ttactaccga tatacgacac atttcaggaa      2580
     aagacaatac tatcgccgac gcattgtcaa gagtcgaaaa gatccaggaa tcagttaacc      2640
     tagaggatct agcaaaagca caagaagacg acactgaatt gcaagagtta gtaaataaag      2700
     actcggcact gaaactgcag aagatacaaa ttcctgggac aaattccaca ctatattgtg      2760
     acacaacaac accaatcgca agaccgttcg tcacaaagga atatagaaga caagtgtttc      2820
     aatcactaca tagcctgtca caccctggga ccaaagctac agcaaaatta gttgcagaac      2880
     gatatgtatg gccaagaata aaagcggatt gccaccaatg gacacgggcc tgtatcaact      2940
     gccagcgagc caaggtacag aggcacaatc ggacacctct cggcagtttt aagaaccctt      3000
     caaaacggtt tgaacatata catatagatc tggtcggacc tctacccatt tcaaaaggct      3060
     ataggtattg cctcacggta atcgatcgat ttaccagatg gcccgaagct ataccggtaa      3120
     cagacatatc cgcagagaca gtagcacaga atctgttcac ccactggatc gcaagattcg      3180
     gcacacctgt tcggatcaca acggatcaag gaaggcagtt tgaggccgac ttgttccgac      3240
     aactaaccaa aataacaggt acaacgcaca tgcatacaac ggcctatcac cctgcagcaa      3300
     acggcatggt agaacgcctc catcgccaga taaagacagc aataaaatgt cacgcaacag      3360
     aagcatggac agaaatactg ccagtagtca tgatggggat cagggcagcc ttcaaagaag      3420
     atcttcacgc aacaccggca gaattggtat atggagaagc aataagacta cccggagaat      3480
     tccttcaaga gtcacaggac acaacagaga actcaaatga ttttatactc cgactcaagc      3540
     aaactatgaa aaaactacga ccacaaccgg ttaagaaaag acacggaacg ccagcaatct      3600
     ttgagtacaa agacttggaa aaagcttcac atgtattcct caggcatgac gcaccaacac      3660
     gggcactcca accacgtata gcggcccgta tgaagtcctc aacagaacag aaaaggtcta      3720
     taagttacgg atcaacgaga aaaccgtcca cgtaacaaag gatcgactaa aaccagcata      3780
     catactaaca gaggaaccgg cccagacaaa agagcagaca gaacctcaaa acgttccaac      3840
     ggttccaggg aatcaagaaa caccgacacc cacagaaatc agaacaagaa gtgggagaac      3900
     ttcacgcaag acggtacgat tccaakcatc ctaacaaaat acaacgaagg gggtaa          3956
//
ID   Gypsy-14_CFl-LTR repbase;    DNA;    INV; 1134 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1134
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1035-1035 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1134 BP; 276 A; 360 C; 300 G; 190 T; 8 other;
     tgtggcggta cacgccacac aagacgtttc gcgatagcgc actgactcgg cgcgcggcaa        60
     ctttgctttc tcgcaagcgc acgagcacgc ggcgaccctg ctttctcgca ggcgcgcaag       120
     cacgcggcga ctcggctttc tcgcaagcgc gcaggcatgc ggcggctact tataagctgc       180
     gcgcctagta ccgggcacct ccgccaggcg tcgcacgcca actgtgcttt tcccgaaaat       240
     cagaaacagc attcggcaaa tataaggagg acccccgcag agccaagaca cctctctcac       300
     gtctatcgct tctaagcgct acgagaagaa agaagaagaa ttcgagaaga gcagcaacct       360
     cgacgacatc acggcggcaw mggagaactc acctcctctc tcggaggaga tcaccgctcg       420
     gaagaggacg cgaccagctc cggtactatc gggcagacgg agcaacgagg cgacgacggg       480
     actacccgtg gcactctctc cgccacgaag gaccacctcg gccaacagga gcccccaatc       540
     gggggagagc tccttggagt gtagacctcg ctcccggaag gtcattctcg gggtccgcat       600
     cccggcctct ctcaagagga gaagagaagg gtcatctacg atccttctct aacacctatc       660
     atacaacgag gacgtaacag gactggcctt accatcgcct tccatccacg cggcgtaaaa       720
     aaggcctacg gaaggcctaa ggctgtcctc ggtccgaggc cgaccacgcc ggtctcatcg       780
     gggccagtgc magtaccgac aatwccgtgg tacacgccac cacgcatttc cccggagcca       840
     cgggacccac gactgtccaa gcttcaggag gtcacccggt ctacggccac gcagacgacg       900
     ataagcacta gggacgcgtc tacccagacc gacggaaaac gagaggagtc caccgatacc       960
     gggtccggaa cgcsgggacg cagacccgat ccccggatcc atacacgtac actagacact      1020
     mtcacagacc tatattcgwt gatgtatgaa tamggaataa atgttatttt taccgttcct      1080
     accgtgtggt ttattgagta aaagaacctg ccatattcct agcggttccc taca            1134
//
ID   Gypsy-14_CoFl-I repbase;    DNA;    INV; 10680 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-10680
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2295-2295 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           598..2274
FT                 /product="Gypsy-14_CoFl-I_1p"
FT                 /translation="MQSGKIDNVVGGAVDRLADAEVVTDDSLWLQFCHDPE
FT                 AVKELEKSNKKTKDLIGKIFKGMKTVVLRDKKKEGPKQIIGGNEASESYIE
FT                 PLRSDDSGEEGDESDRGPARNQLGNWRRETELLRRWPEREGGENEREFHNR
FT                 DRRKARPMREFENFKNNQERWEQTTGGSTHRSPHHREYERNINYSIKELST
FT                 IIPTIPIFTGDPINLSAFTRVVRAIGRQVDDRDVLYFLATLSSRLKGRAAA
FT                 HLNDRITQFESIEEFLEEVTERYGAISSTETVMAKIRSERQRDRESVEEYS
FT                 DRMQKLFNRAMGLQEANLEVSEMLRQEFKKNIQKEVVTQYILGLNPPYNHE
FT                 VSMHRPITLTKAITLALKVEDMMAMKSPRVDSNKYERWEKEFNKKEDEVNK
FT                 CNYCGRIGHKAEECRSLWHDIEKGLLVKKGRGEETRAPYYTRYQDRGEERR
FT                 SARSYNDSGRRPGDYRHNNMAQAENKYNYGRYGRDFEKGYAYRENNNNNNS
FT                 NNRYYEPNGRNYGQRDSGRDDSRNNYDWKSNERYEPRHTNGTQDAREAEPR
FT                 RGDISSKQKPNF"
FT   CDS           5342..8347
FT                 /product="Gypsy-14_CoFl-I_3p"
FT                 /note="OTU protease and integrase."
FT                 /translation="NMLERIRAWERERDDSRERSSKSRSTSEDRTSGEEKK
FT                 SENPRRERQKESNYFAKKDPKKLNDLTSMLQEKTDRLKKKVFVDIREREVE
FT                 GKPGVRIDVWEVEDSSRDSSKKGDRNKEKEGTVSTEDKSEEEKSEGKTSSE
FT                 GANLSWDNQGERLSLNHGETSGAFDNLNDEESSKXNQLISNDALNEQKRGS
FT                 DGNCAEPWKEWDLVDVKGDGNCLFYSLIVLFDLDLTAKQLRKILLHSEHIK
FT                 NCVDPENTKRILRKDYEFGDGECIFVFSQEFKKNICVHYVNGDGPPMCHHY
FT                 TGIKGDEYEHMRYEPEHYQALCEKGQKRYKSMDELYKNSSDEDSKIVRGAR
FT                 RATLRKRNENKFPYTRQKIKGRVNKKTKEDNKTDHETSDESDSGSKEKRIP
FT                 KKRDPPPPPPEPPDEPSPIAEQETPKISDDDVNNESHEKEVSDNENGKELL
FT                 NANMVADDNAESTDDGKINISIPGLDRYRACRTRLPVQKPPWKPEEDKDIP
FT                 PFQRLKKINEHPFRYIDNLAFCTITENIPDTEAIDALHERGYINPTAMNKE
FT                 NRRVGEVFLSRARKVSVMQLYVKEHFDSAGLKSDIKKCISSLKQLMLFNKL
FT                 TSVGIIRDLAILSVSQWDYFAEQFENTFENTKISAVLYLNNLVVPPVEQRF
FT                 DVLKEYHESSVGGHRGMNQTYNKIAKDYYWRNMRPDVRQFVLGCESCQSKK
FT                 LVRVRTKQALVVTDTPARPFEKISIDFYGPINKPSAHGNSHILSIQDWLTK
FT                 YIILVPVKRATALETAKALLNRVIAYFGAPEKMLSDRGAHFQNKLLEEFAR
FT                 VFKIDKMGTTAFHPQSNGAIERMHHTLTEYLKAYVNEDDFWDDHLGMCMCA
FT                 YNSTKHSATGIAPQEVLLGYPARIPSSFKKTMNEQTYDEYVEDVIKTMTRL
FT                 RTIAAMNQVQAKYRSKYYYDKKLNTRFFMEGEMVYVLKEPRKKYEDHYEGP
FT                 YEIVGINYKNHNIKLKRGNETRITHVDKIKKACVIKTQLLDNRELGE"
FT   CDS           2259..5600
FT                 /product="Gypsy-14_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="TEAEFLERCSKYSPNIEHREKVATYXKGPKVNDVKIG
FT                 EKEEKPIQSEVWGKEINKNKINTRQQIEPNLKKNLKDKNISMGKEDKKEVT
FT                 TVLINYAAVGRRPPTVTLESEDFRNKRSDFYADTGAEISILKEDYIKENSP
FT                 LDENVKVKIIGVTHGERETKGTVDTMIHGMKCTFHVVPQDFPIEVDGILGW
FT                 DMFKKYNGEVSAKTNTLSLGGVETPLKTAEYFEIAARSRQVIYARVKKEFG
FT                 KIQVGFVPLQDLGEHVHFGDFYGTNNKGKIYAECVNFSNKKRRITVPEVDL
FT                 IECEEVKKMEITGNVGDGAREEETAFVGLLEEVKLEEKEIEKKYRLRYKSV
FT                 DGDKEIDTYAEKDCDIKSVEERIEKIMTLIDTEGCNEEELQHVRKLISMNP
FT                 FVFGLDGEPLKTTHLIKHKIETTTNKPVVVRRYRYPPAVKENIRREIQKLM
FT                 DLDIIEPSTSPYNSNIWIVPKPPGQNGEKRWRLVTDFKQLNEITVGSCYPL
FT                 PFQSDILEHLAAAKYITVVDLKSGFHQIKIQEEDAHKTAFSGPDGHYQYKR
FT                 MPMGCSESPNTFLRAITLALADLQGREIEVYMDDIMVFAATLEEHEKRFKK
FT                 LIERLAKANMTIEPKKCQFLKKEAKVLGHVVGNGKIKTDPKKIEAAKEYPR
FT                 PTNTRKIKQFLGFAGYYRKFIKDYAKIARPLSTMTKKNTEFKWGEKEEEAF
FT                 KKLVDALCSEPVLTAPDLSKPFIVTTDASDYAIGAILSQGEIGKDRPCEYA
FT                 SRCLKGSELRYPTYDKELLAVVFAKEQFRPYLYGRKFTVVTDHEPLKHFNT
FT                 SKKPDIRFNRLKAELRGYDFDIIYRPGISNNAPDALSRNPVVKEGEKNPEL
FT                 PRIELYQMADEQEKEEGVVSDGPPARMFKIRAKSKIRIDGKLKKVVVESDS
FT                 DSSHKKPRKKKTEVELCSEEEVEEKQQTEEKILSQGPLKNKLEHMKKEKGW
FT                 IKGVQKTSTPYVVIDHQTRQKQRKKRQRQLDTLNRIRQNFSVTPVKNTQTE
FT                 ENIIVNWEKRPEIKHNNLEEIEICLNGSEHGKERETTVGREAQKVVVLRRI
FT                 ERPGKKKNQKIHDEKGKKSLTILQKRIQKNLTTLPACYKKRQIDSKKKFLS
FT                 TSEKER"
FT   CDS           8540..10417
FT                 /product="Gypsy-14_CoFl-I_4p"
FT                 /translation="MPVTQQPGEIEEIERNPGILVESLGPVQAVASTWKMI
FT                 WYVDWNDVVEEVNSFLDAKKQAKWKCRVTIKKEHECIEQVEYTAGKVLRAL
FT                 DRVKEAYRTVVGQKIDDQSKTVQALQGGVTDVEKEKIQKLVEAIPTNTMET
FT                 TKYLTEQIRVITYGNHERYLQDIKTFKDKAGRITEEGLKMFAEYFGNYDRV
FT                 TEMVGEFEHLAEKLITKFGTTVDIIYLASRGTTHIPDAALRAILEAKILAE
FT                 QLRPDLQFPVRENITTEEEIGEISEITTMAFNGRIIYYIRIPLVTKENLDL
FT                 LRISSLPVEQKGLNTTDLVAYLQPTYEYIASSVSERRFTPIPQEVIRLCKR
FT                 LGKTRICTQMEPTQEVEEDHPCEIRIILGIAVKKPEECPIILAKLKGTFWT
FT                 RLHAKNQHAFTTTRKDKVHIQCEHTEHKTLKVVDSGVVSLARDCIAQASNT
FT                 RLDPGQEEGENRIMKLESANLNLKDILQKVKGTEGGMLLELMEAVIKRDGL
FT                 QELDNQEHGLDDRIKTGTKLADILQRAHELVQTKEEFSNWKEYALLAAEIA
FT                 LGVAAGSFGFLKWGGPIILKGLRMITGGRERNRGNTNSVLQDLSTQRAMVN
FT                 AREVQVLLGERVGSEGRRLPAQLTTNPR"
XX
SQ   Sequence 10680 BP; 4180 A; 1807 C; 2555 G; 2136 T; 2 other;
     ggaggttgta gataacccga cccccaattt ttggcgctcg acgtgtggcg agttgtgtac        60
     gacaaagtga tagaaaattt ttttttggtt ttctttcgtc gtcgggaagc acccacagtg       120
     cagtgtaagt ggaaataaaa agaattatcg tgaaaagaaa agtgaaataa aaaaaaaaag       180
     aatttaaaga agaaacagtg aataataaca agaaaagaaa aaaatacagt gttaagaaga       240
     cacacgcggc gagacacgtg agaaacgagc aggtgtcaag taccagcgtg ggcgcacagc       300
     agccatccag gaggccggca ccgtcaggaa ataagacaag ggagagccaa aacacgaaac       360
     tacaccacac cacgcaccct ctggtagcaa tatttttctt tggacacttt gtttacggac       420
     acggaaatgc tttggatcgt actgcttaca atactgtcca ggtagataaa atttatataa       480
     acggtaaata atattactgc tgggcgataa gttttatcaa ataggcccat aacaaacaaa       540
     tacaaccaaa caaacaaaaa aaaacacaaa aaaaacaacc aagcaaaata aaacaaaatg       600
     cagtcgggaa aaattgataa cgttgtaggt ggggcggtgg accgcttagc agacgcggag       660
     gtcgtaacag acgacagttt atggttacaa ttttgccacg atcccgaagc ggtcaaagag       720
     ttagaaaagt cgaacaaaaa aacaaaagac ttaattggaa aaatttttaa gggcatgaaa       780
     acggtcgtgc taagagataa gaaaaaagag ggccctaagc aaataattgg aggaaacgaa       840
     gcctcagaat catatataga gcccctgcgt agtgatgata gtggagagga aggggatgag       900
     tcagataggg ggcccgctag gaatcagctt ggcaattgga gaagggagac agagttgctc       960
     cggagatggc cagaaaggga ggggggagaa aatgaaagag aattccacaa cagagataga      1020
     aggaaagcta gaccgatgcg ggagttcgaa aattttaaaa ataaccagga gaggtgggag      1080
     caaacaacag gtggatctac acacagatcg ccgcatcacc gggagtatga gaggaatata      1140
     aattactcaa ttaaagaatt gagcacaata atcccaacaa taccaatatt tacaggggac      1200
     ccaataaatc tgtcggcgtt cacaagggta gtaagggcaa taggccggca ggtggacgac      1260
     agagacgtcc tatatttttt ggcaacgcta tccagcaggc taaaaggtcg agcggcagca      1320
     catttaaatg atagaatcac acagtttgag tctattgaag aatttctcga ggaggttacg      1380
     gaaaggtacg gggccatcag tagcacagag acagttatgg caaaaattag gtcggaacga      1440
     caaagggata gggaatctgt agaagaatac tcagatcgca tgcaaaagtt gtttaacagg      1500
     gccatggggc ttcaagaagc aaaccttgaa gtttctgaaa tgttaaggca ggaatttaag      1560
     aaaaatattc aaaaagaagt agtgacccaa tatatattag gccttaatcc cccgtacaac      1620
     cacgaagttt caatgcatag gcccataacg ctaacaaagg ccattacatt ggcattgaaa      1680
     gtcgaggata tgatggctat gaagtcacct cgagtagaca gcaataaata tgagagatgg      1740
     gaaaaagaat ttaacaaaaa ggaagacgag gtaaacaagt gtaactattg tggccgaatt      1800
     gggcacaaag cagaagagtg tcgttcattg tggcacgaca tagaaaaggg gctgctagtg      1860
     aagaaaggtc gcggtgagga gaccagagca ccgtactata caaggtacca ggataggggt      1920
     gaagaaagaa gaagtgcaag atcatataat gatagtggaa gaagacccgg agactacaga      1980
     cataataata tggctcaggc agagaataaa tacaactacg gcagatatgg gagagatttt      2040
     gaaaaagggt atgcttatcg cgaaaataat aacaataaca atagtaataa cagatattat      2100
     gagccgaatg gcagaaatta cggccaaaga gacagtggta gggatgatag ccgaaataat      2160
     tatgattgga aaagtaacga gcgttatgag cctagacaca caaacgggac acaagacgca      2220
     agggaggctg aacctagacg gggtgatatc tctagtaaac agaagccgaa tttttagaac      2280
     gatgctcgaa gtactccccc aacatcgagc atcgggaaaa agtggctacg tattktaaag      2340
     gaccaaaagt aaacgatgta aaaattggag agaaagaaga aaaacccata cagtcggagg      2400
     tgtggggaaa ggagataaac aaaaacaaaa ttaatactcg tcaacaaatc gaaccaaatt      2460
     taaaaaaaaa tctaaaagat aaaaatatat cgatgggaaa agaggacaag aaagaagtca      2520
     cgacggtact aattaattat gcagcagtag gacgcagacc gccaacagta acgctggaga      2580
     gtgaggattt ccgaaataaa agatcagatt tctatgctga cacgggtgct gagatctcga      2640
     tactaaaaga agattatata aaagaaaatt cgccattgga tgagaatgta aaagtaaaaa      2700
     taattggagt aactcatgga gaacgtgaaa caaaaggcac ggtggacaca atgatccatg      2760
     gtatgaagtg cactttccat gtagtcccgc aggattttcc gatcgaagta gacggaatcc      2820
     ttggatggga tatgtttaaa aaatacaatg gcgaggtgag cgcaaaaaca aatacactta      2880
     gcctaggtgg tgtggaaacc ccactgaaga cggcagaata tttcgagata gcagcgagat      2940
     ccaggcaggt tatatatgca agagtcaaaa aagaattcgg aaagattcaa gttggatttg      3000
     tgccacttca agatttggga gaacatgtgc attttggaga cttttacggc actaataata      3060
     aaggtaaaat atatgcggaa tgcgtgaatt tttcaaacaa aaaaaggaga attacagtac      3120
     cggaagtgga tctaatagag tgcgaagaag tgaagaaaat ggaaataact ggcaacgtgg      3180
     gggacggcgc cagagaagaa gagactgcat ttgtgggctt gctcgaggaa gtcaaattgg      3240
     aagaaaaaga aatagaaaaa aaatacagat tgagatataa aagcgtagat ggagataaag      3300
     aaatcgacac gtacgcggaa aaagactgtg atataaaaag tgtcgaagaa agaattgaaa      3360
     aaattatgac actgatcgac actgagggct gtaacgaaga agagttacag cacgtaagaa      3420
     aattaatatc gatgaatccg tttgtgtttg ggttggacgg ggaaccgtta aaaacaactc      3480
     atttaattaa acacaaaata gagactacaa caaataagcc agtagtggtc agaagatata      3540
     gatacccgcc cgcggtgaag gaaaacatca ggagagaaat tcaaaaattg atggatttgg      3600
     atataataga accgtcaacg tccccatata actcaaatat atggatagtg cctaaaccgc      3660
     caggacaaaa cggcgagaaa aggtggcgac tggtcacaga tttcaaacag ctgaacgaaa      3720
     taactgttgg aagctgttac ccactaccct ttcaaagcga catattggag cacttagcgg      3780
     ccgctaagta catcacagta gttgatttga agagtggatt ccaccagatt aaaatccaag      3840
     aagaggacgc gcataaaact gcattctcgg gacccgacgg gcactatcaa tataaacgta      3900
     tgccaatggg gtgctcagag tcaccaaata cattcctgag ggcgataacg ttagctctag      3960
     ccgatctaca agggcgagaa attgaagtat acatggacga catcatggtg ttcgcagcaa      4020
     ctctcgaaga acacgagaaa cgcttcaaaa aattgataga aagactggca aaagcaaaca      4080
     tgaccataga gccaaaaaaa tgtcaatttt tgaagaaaga agcaaaagtc cttggtcacg      4140
     tggttggaaa tggtaagata aagacggacc cgaagaagat cgaagccgca aaagaatatc      4200
     caagaccgac aaatacaagg aaaattaagc agtttcttgg attcgcggga tattacagaa      4260
     aattcataaa agattatgca aagatagcgc gaccactctc tacaatgaca aagaagaata      4320
     cggagtttaa atggggcgaa aaagaggaag aggcctttaa aaaactagtg gatgcgctat      4380
     gttcggaacc tgtattaaca gcaccggact taagtaaacc gttcattgtt acaacagatg      4440
     cgtcggatta tgccatcggg gcaatcctta gtcagggaga gataggtaag gatagaccat      4500
     gtgaatatgc gtcacggtgc ctcaagggta gtgaacttag atatccaacg tatgataagg      4560
     agttgctagc agtagttttt gcaaaggaac agtttagacc ttatctgtat ggcaggaagt      4620
     tcacggtggt tacggatcac gagccgttga aacattttaa cacgtccaaa aaacccgaca      4680
     ttcggttcaa cagattaaag gcagagttgc gtggttacga tttcgatata atttatcgcc      4740
     caggtatctc aaacaacgca ccagatgctc tttcaagaaa cccagtcgta aaagagggcg      4800
     aaaagaaccc agaactaccg cgaatagaac tgtatcaaat ggcagatgaa caagagaagg      4860
     aagagggtgt agtaagtgat ggcccaccag cgcgtatgtt caaaattagg gcaaaatcaa      4920
     aaatacggat cgacggtaag ttaaagaagg tagtagtgga atcagactca gattcatcac      4980
     ataaaaaacc caggaagaaa aagactgaag tggaattgtg ttcggaagaa gaagttgagg      5040
     agaaacaaca aactgaagag aaaatcttat cgcaggggcc actaaagaat aaattagagc      5100
     acatgaagaa agagaagggc tggataaaag gggtacaaaa aacgagcaca ccttatgtcg      5160
     tcatagacca ccaaacaagg caaaagcaaa ggaagaaaag acaaaggcag ctcgacactc      5220
     taaacagaat tagacagaat ttttctgtca ctcctgtaaa aaacacacag actgaagaaa      5280
     atataatagt gaattgggaa aaaagaccag aaattaaaca caataatttg gaggaaattg      5340
     aaatatgctt gaacggatca gagcatggga aagagagaga gacgacagta gggagagaag      5400
     ctcaaaaagt cgtagtactt cggaggatcg aacgtccggg gaagaaaaaa aatcagaaaa      5460
     tccacgacga gaaaggcaaa aagagtctaa ctattttgca aaaaaggatc caaaaaaact      5520
     taacgacctt accagcatgt tacaagaaaa gacagataga ctcaaaaaaa aagtttttgt      5580
     cgacatcaga gaaagagagg tagagggaaa accaggagtc agaatagatg tatgggaggt      5640
     agaagatagc agcagggatt caagtaaaaa aggtgatcga aacaaagaaa aagagggaac      5700
     agtaagtacg gaagataaaa gtgaggaaga gaaaagtgaa ggcaagacca gcagcgaagg      5760
     agcaaatctt tcgtgggata atcagggaga aaggctatcc ttaaatcatg gtgagacgtc      5820
     tggggcgttc gataatttga atgatgaaga atcaagcaaa aasaaccaat tgatttcaaa      5880
     cgatgcactt aatgagcaaa aacgtggatc agacggaaat tgtgcagagc catggaaaga      5940
     gtgggattta gtagatgtaa agggcgatgg taattgcttg ttttatagtc ttattgtact      6000
     gttcgatctg gacttaacag caaagcagct aagaaaaatc ttactgcatt ctgaacatat      6060
     taaaaactgc gtcgacccgg aaaacactaa gagaattttg aggaaggatt acgagtttgg      6120
     ggatggagag tgcatttttg tcttttctca ggagttcaaa aagaacatat gtgtgcacta      6180
     cgtaaatgga gatggacctc caatgtgtca tcactacaca ggaataaaag gagatgaata      6240
     tgagcacatg cggtatgagc cggagcacta tcaggcgctc tgcgaaaaag gacaaaaacg      6300
     ctataaatcg atggatgaat tatacaaaaa ttcaagtgat gaagacagta agatagtacg      6360
     aggggcgaga cgagcaacat tgaggaaaag gaatgaaaac aagttcccat atacgagaca      6420
     gaaaatcaag ggtagagtta ataagaaaac aaaggaagac aacaaaacag atcacgagac      6480
     gagtgatgag tcagattctg gatcaaaaga aaaacgaata ccaaagaagc gcgatccgcc      6540
     accacctcca ccggaaccac cggatgagcc tagcccaata gcggaacaag aaacaccaaa      6600
     aatatcagat gacgacgtaa acaatgaaag tcacgaaaaa gaagttagcg ataatgaaaa      6660
     tggaaaggag ttacttaatg cgaacatggt ggcagatgat aatgccgaaa gcacagatga      6720
     tggcaaaatc aatataagta taccaggttt agataggtac agagcttgcc ggacacgact      6780
     accagtacaa aaaccaccct ggaagccaga ggaagataag gatataccac cattccaaag      6840
     gcttaagaaa ataaacgaac acccatttag atacattgac aacttagcct tctgtacaat      6900
     aacagaaaac ataccggaca cagaagccat agacgcgctt cacgagagag gttatataaa      6960
     tccaacagcc atgaataaag aaaataggag ggttggagag gtcttcctat ctagagcaag      7020
     aaaagtatca gtaatgcagt tatacgtgaa agagcacttt gacagtgcgg gattaaaatc      7080
     ggatattaag aaatgcatat cgtctttaaa acagctcatg ttgtttaaca agttgacgtc      7140
     agtaggtatt atacgagatc tagcaatact aagcgtatca cagtgggact atttcgcaga      7200
     gcaatttgaa aacaccttcg aaaacacaaa aatatcggca gtgttgtact tgaacaattt      7260
     agtagtacca ccagtggagc aacgatttga tgtactcaaa gaataccacg agtcatcggt      7320
     aggaggccac agaggtatga accagactta caacaaaatt gcgaaagact attactggcg      7380
     aaatatgcga ccggacgtac gtcagttcgt gttaggttgt gaatcatgcc aatctaagaa      7440
     acttgttaga gtaagaacaa aacaggctct agttgtaaca gatacaccag ctaggccatt      7500
     tgaaaaaata tcaattgatt tttatggccc gataaacaaa ccatcggctc atggcaatag      7560
     tcacatattg tcaattcagg actggctcac gaaatatata attcttgtac cagtaaaaag      7620
     agcgacggcg ttagaaacag caaaagcact tttaaacaga gtaattgcat actttggcgc      7680
     cccagagaaa atgctgtcag acagaggtgc acatttccaa aacaaactgt tggaagagtt      7740
     cgcaagagta tttaaaatag acaaaatggg aacaacagcc ttccatccac agagtaacgg      7800
     cgcaatagaa cgaatgcatc atacattaac ggaatattta aaggcgtacg taaatgaaga      7860
     tgacttttgg gacgatcatt tgggcatgtg catgtgcgct tacaattcga caaaacactc      7920
     agcaacgggg atagcgcctc aagaagtatt gctgggctac ccagccagaa tcccatctag      7980
     cttcaagaaa acaatgaatg aacaaacgta tgatgaatat gtagaagacg taataaaaac      8040
     aatgacgcgg ctaaggacaa tagcagccat gaatcaagtt caggcgaagt acaggtccaa      8100
     atattattac gacaaaaaat tgaacacaag atttttcatg gaaggggaaa tggtctatgt      8160
     tcttaaagag ccgagaaaga aatatgagga tcactacgaa ggaccatacg aaatcgtagg      8220
     aataaattac aaaaaccaca atataaaact gaaacgtggc aatgaaacaa gaattacaca      8280
     cgtggacaaa atcaagaaag catgcgttat aaaaacccaa ttgttagata atagggaact      8340
     cggggaataa agcaggataa caaaaacaaa tcgcataaga gtaagaagca aataaaaaaa      8400
     aaaaaacgag atatcagaaa caacaagacc aaaatagtgt acttctctcg taagcgtggc      8460
     cttcggacga cttacgagat cagcaatcaa aacggtatga acaaaaaaaa tacaaatctt      8520
     gtgtttcagg gctggaacca tgccggtgac acagcaacct ggagagatag aggaaattga      8580
     aagaaaccct ggaatattgg tggagagctt gggcccagtc caagcagtcg catcaacttg      8640
     gaaaatgata tggtatgtag attggaatga cgttgtcgag gaggtaaatt cgtttttaga      8700
     cgcgaaaaag caagcaaaat ggaagtgcag ggtgacgata aaaaaggaac acgaatgtat      8760
     agaacaagta gagtacacgg caggaaaagt cctaagggcc ttggataggg taaaagaggc      8820
     atatagaaca gtagtaggcc aaaagatcga tgatcaaagc aagacggtgc aagcgctgca      8880
     ggggggtgtg actgacgtgg aaaaagagaa aatacaaaag ctagtagagg cgatcccgac      8940
     taacacaatg gaaacaacta agtacttaac ggaacaaatt agagtcataa catatggaaa      9000
     ccatgaacga taccttcaag atataaaaac gtttaaagat aaagctggaa gaataacgga      9060
     ggaaggttta aaaatgtttg cagagtactt cggcaattat gacagagtta cagaaatggt      9120
     gggcgaattt gaacacttag ccgagaaact tataacaaaa tttggaacaa cggtggacat      9180
     aatatacttg gcgagtcggg gaacgacaca tataccagat gcggcattga gagcgatttt      9240
     ggaagcaaaa attttggcag agcagctgag accagatcta cagttcccag taagggaaaa      9300
     tataaccaca gaagaagaaa ttggagaaat ctcagaaata acgaccatgg catttaacgg      9360
     cagaataata tattacatac ggataccact ggttacgaaa gaaaatttgg accttcttag      9420
     gatatcatca ttgccagtgg aacaaaaagg cttaaatact acggatttag tggcatactt      9480
     gcagccaaca tacgaataca tagcgagcag tgttagtgag agaagattta cgccaatacc      9540
     gcaagaggtg ataagactat gtaaaagact aggaaaaaca cgaatatgca cacaaatgga      9600
     gccaacacag gaagtcgaag aggaccaccc ctgtgagata cgtatcatat tggggattgc      9660
     agtgaagaaa ccagaagaat gtccgataat attagccaag ttaaagggca cattttggac      9720
     acgtctccat gctaaaaacc aacatgcctt taccaccacg agaaaggaca aagtccacat      9780
     acagtgtgaa cacaccgaac acaagacact gaaggtggtg gattctgggg tagtcagctt      9840
     agcaagagac tgtatagctc aagcatcgaa tacaagactg gatccaggac aagaggaagg      9900
     tgaaaatcgc ataatgaagc ttgaaagcgc aaatctaaac ttgaaggata tactacaaaa      9960
     ggtgaaaggg actgaaggag gtatgttatt ggaattaatg gaagcagtga taaaaagaga     10020
     cggactacag gaactcgata accaggaaca cggacttgac gataggataa aaacaggtac     10080
     taagctagcg gatatactcc aacgggcaca cgagttagta caaacaaagg aggaattctc     10140
     aaattggaag gaatacgcat tgttggcagc ggaaatagca ctaggagtgg cagccggatc     10200
     ttttggattt ttaaaatggg ggggtccaat aatacttaaa ggtttgagaa tgattacagg     10260
     cggacgggag aggaaccgcg gaaacaccaa ctcagtacta caagacttgt caacccagag     10320
     ggccatggtt aatgcacgag aggtacaagt gctactgggc gagcgggtag gatcagaagg     10380
     cagaagacta ccagctcagt taacaaccaa tccgcgatga tcattgagat cgacgatgta     10440
     ataaaaaggg ttatacataa gatgtgtaca gattaaaaaa aaaaataaat aaataaaaaa     10500
     ataaaaataa ataaataata aatatacaaa gaatataatt atacaaaata atgtaaagag     10560
     agcagcgcaa acaagaacaa ttatgtatac acaaataatt cacagacaac ataacacaaa     10620
     tatactcgca cacacaaacc agtatggcca tcgaggacga tgaccgcgtg gcctcggacg     10680
//
ID   Gypsy-14_CoFl-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-275
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2308-2308 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 275 BP; 65 A; 94 C; 50 G; 66 T; 0 other;
     tgtgacgtac agtatctaga acctttgtaa gttcgcgccc aagactcacc tctcacggcg        60
     catgagcagc ggatacagag tatgatgatc acctttcggc ggcgggcccg agcgttatca       120
     gctctcccgc tctctctctc tctccgatca gcctccgaac ctaacgccac gcacgcgact       180
     gctctcgctt tgagactcta ataaacgaac atatactttc ttccacgtgt attcaatccc       240
     cttacacccc gaaactccac aattcccacg taaca                                  275
//
ID   Gypsy-14_CQ-I repbase;    DNA;    INV; 5776 BP.
XX
AC   AAWU01010358;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_CQ_;
KW   Gypsy-14_CQ-LTR; Gypsy-14_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5776
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 407-407 (2011).
XX
DR   GenBank; AAWU01010358; Positions   16893   11118.
XX
CC   Positions [4733-5209] - Integrase core
CC   'GATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           931..2424
FT                 /product="Gypsy-14_CQ-I_1p"
FT                 /translation="MTTVCFSIINRFVEMYAPGRYVRAPSVSPDREDDHDV
FT                 GKFVRAPNQALFDRSRRPDHGSGEPREVDPYAHYDTPWETAQQVQAELNAR
FT                 VRQLEDIIKELSQTRSSTLGGSPAADAVNQDDPPVPAEGNLTVAVYGAPVT
FT                 PVGKTHGSISQREEPRNDGSSGDGFRGSTAGTLPATPSEAAVRWDNIRAFP
FT                 KDVPATKMWEAWTLFIEDFEMAATLSSVKSSRRRAELLLVSMGSQLKSITR
FT                 AAQLLPDLDSDRCYEEFVDNVGRYLKSLTDPAAEHEEFTNMVQQEGEAAIY
FT                 FHARLAEKVRLCDYPGGRESEDRFVRAQLMRGLRNQELKKAARTYGLDTNN
FT                 IVTSATRAEAFRDERPPATPDTNVFAIDKPQEHRGPSKRKYEDQRRPMKRF
FT                 KQEDSTFNQGRSQFNQGGARFNQGRSMNNQSRAPIRRRSRCSRCWKQIHNE
FT                 GEDCPAAGRTCFACGTVGHFAIACHQREAYSVEDAGRTTGERAAKKKDQVN
FT                 FV"
FT   CDS           2729..5677
FT                 /product="Gypsy-14_CQ-I_2p"
FT                 /translation="MRVDRSFKATIEVCGPNKAAIEAEFLVVEEGRRSLLG
FT                 RETASDLNLLKVGCAINSCENPDQFPKMPGVKISFSVDRSVPPVRNAYYNI
FT                 PAAYRDKARQRLAEMERQGIIEKVTSAPQWISGMSAVPKGQDDFRLVVNMR
FT                 APNKAVLREYFRLPLMDEMRVKLHGAEYFTKLDLQSAYYHLELCEDSRDLT
FT                 TFLSESGMFRFCRLMFGVNAAPEIFQREMVRIFKDVKNIIIYIDDLLIFAK
FT                 TIDELRKTTAEVLKILRANNLTLNTAKCKFDQTQVTFLGHELSAKGFNIEQ
FT                 SKISSIQKFRQPSTASELRSFLGLASFVSPYIKNFAGMSGPLWAVVNDNKW
FT                 HWGEEQQTAFEAVKENIIQSTLSLGYFSDCDKTILYTDASPYALGAVLVPE
FT                 NDNSTPRIISFASKALSPTERKYAQNQREALGAIWAVEHFSYFLLGRHFVL
FT                 RTDAQGMSFILDRPREESKRALTRADGWALRLSPYRYQVQFVKGRDNIADP
FT                 SSRLYQGEDDEFDERANSWEVCQLELNRVEFLTEDEIKECTAKDDTLQKVL
FT                 FHGGQIQFSKVSFKTVILFQVIDSLASGKWSNELLRFKAIASDLHYSDGML
FT                 SKNGCAVLPANLRESALEVAHAGHPLEAKFKSILRKRVWWPGMAGDAEKWV
FT                 KSCSTCAVNGRPEKPTPMQRSFAPKAVWDTVAVDFNGPYARLGGILILVII
FT                 DLRSRYAMAYPVKSTGFEHTRTVLDAIFGREGFPRAMKSDNGPPFNGEDYA
FT                 NYCSERGIQTVFSTPFFPQQNGLVECFMKNVNKAMSTALSTGSDYRKELQA
FT                 TVQAYNAADHTVTKVPPEEVFSGRKIKRGLPLLLRGRTEHDDLVFDARDHE
FT                 AKIKSKTREDTRRGAKRSTVKPGDAVLIERQSKAKGETRFDPKRYTVMEER
FT                 NGSLVVCDPDGRQLRRHVTQTKKVQQWREPRPIIQEAQRSDELGCHDQEVK
FT                 EIDQQRPRRTVKIPSHLSDYIRAVEEEF"
XX
SQ   Sequence 5776 BP; 1571 A; 1349 C; 1590 G; 1266 T; 0 other;
     ttttggcgac cgtgacaggt ggtttaaata gtaatttaaa ccgcaaagat tattcttcgg        60
     cgttttcctt ttaaaaacta tcacgcggga aatcacccac gcgcggggta agtggaataa       120
     accaaatttt gccaagagat tttttttcaa aatggcggca ttgtggacaa acaagcgcgt       180
     ggtgtggatg aattcaaatg ttccagaagc tctattgaac agcgaaagtg taatggattt       240
     tttttacctt tctggcaaaa aaaaatcgct caacgcttgg atgtgtgggt gctgagaagg       300
     tgagagcttc tcgtgaggtt cgtgaaccac gagggaaaag cgaagtttga gaaccgcttg       360
     gatgtgtgtg tgctgggatg gtgaggtcac gcggaccacc aaacatcaac tcgtgaggtt       420
     tgagaaccac gaaaaaaaaa agcgaggttc gagaaccgct tgaatgtgtg cccgccgtag       480
     aggtgaggtc gcgaggacca ccgaacggct cttcgtgaag tttaaaaaaa atcgggtcaa       540
     aagaagcgaa gtttgagaac cgcttgaacg tatgtgtgta caagagggct aagatcgcgc       600
     atcgaacagt attttgtgaa gtttgagaac cacgaacaaa gcgaagcttt gacaaccact       660
     caaatgtgtg tgccgttgct cgaaccacca aacggctgct tgctcttcaa cagtcaaagc       720
     ggagctttgg tagtattggt gagagcttga gatttctcta atagagatgt ttgagtcttg       780
     ttgacacagt cgcctaaaaa gtgtttgagg ttgacgcgtg gtaaagtacc agtgttttga       840
     gcctactgct tttgttacgt ttaacacaat ttggcagaaa aataggaaga ctgttggttc       900
     ggtcttggca acttcaacga cacggctgaa atgacgacgg tttgtttttc tattatcaac       960
     agattcgtag agatgtacgc acctggaagg tacgttcgcg caccgtcagt atcacctgac      1020
     cgcgaggatg accacgacgt tggaaagttc gtgcgggcgc cgaaccaggc cctcttcgat      1080
     cgcagtcgtc gtcccgacca cggttcgggt gaaccccggg aggtcgatcc atatgctcac      1140
     tacgacactc cgtgggagac agcccaacag gttcaagcag agttgaatgc cagggtgcgt      1200
     cagctggaag atattatcaa ggagctgagt caaactcgca gtagcacgct tggcggtagt      1260
     ccggcggcgg atgcggtcaa ccaggatgac ccaccggttc cggcagaggg gaatcttaca      1320
     gtcgccgtgt acggtgctcc ggtcacccca gttgggaaaa ctcatggctc gatttctcag      1380
     cgagaagaac ctcggaacga tggatcatcg ggtgacggct tccggggcag caccgctggt      1440
     acccttcctg caacgccgtc ggaggccgca gttcgttggg ataatatcag agcgtttcct      1500
     aaagacgttc ccgctacaaa gatgtgggag gcctggaccc tgtttattga ggattttgag      1560
     atggctgcaa cgctctctag tgtaaaaagc tcaagacgac gtgccgagct acttctcgtg      1620
     tctatgggat cccagttgaa gagcatcacc cgcgcagcac agctgctccc ggacctggac      1680
     agtgacagat gttacgaaga gttcgtggac aacgttggga gatacctcaa atcacttacg      1740
     gacccagcag ctgaacatga ggagttcacc aacatggtgc aacaggaggg ggaggcagcc      1800
     atctattttc acgcgcggct ggcggaaaag gtacgattgt gcgattaccc aggtggccga      1860
     gaaagcgagg accgtttcgt gcgagctcag ctaatgagag gactccggaa ccaagagctg      1920
     aaaaaggcag cacgcacata tggcctggac acgaacaaca tcgtgacttc agcgactcgc      1980
     gccgaagcct tccgtgatga acgtccaccg gcaacacccg acacgaacgt tttcgcgatc      2040
     gacaagcctc aagaacatcg aggtccatcc aagcggaagt acgaagacca acgtaggccg      2100
     atgaaacgtt tcaagcagga agactcaacg tttaaccagg gacggtcgca gttcaaccaa      2160
     ggtggagccc gtttcaacca gggaagatcc atgaacaatc agtcaagggc gccaatcaga      2220
     cgccgtagca gatgtagcag atgctggaaa cagattcaca atgagggaga agactgccca      2280
     gcggccggaa ggacatgttt cgcttgcggc acggttgggc attttgcgat tgcctgccac      2340
     caacgtgagg cgtactcggt tgaggacgca gggcgcacca cgggagagcg agctgcaaag      2400
     aagaaggatc aggtaaactt cgtttaaatt aagattgatt tgaatacaat gtcacttcag      2460
     tgcaagacaa acgatttgtt ttttttcttg attgaattct cctcttcagc aagtcaacgc      2520
     gctttcactc caggacgtac ttgttgactg ccgcattggc tcgtcccacc ccataaaatt      2580
     cctcatcgat tccggttctg acgctaatgt cgtgggcggt gcagactggt cggttctgga      2640
     gaagcagttt gaacgagggg agattgaact gaccccggca aaatgcacaa acgacaggaa      2700
     cttgcaagct tatgcgtcca acaagcccat gagagtagac cgaagtttca aggcaacaat      2760
     cgaagtttgc ggacccaaca aagctgcgat cgaggccgag ttcctggtgg ttgaagaagg      2820
     gaggcgttca ctgcttggta gagaaacggc cagcgacctg aatctgctga aggtgggatg      2880
     tgcaataaac agctgcgaga atccggatca gttcccaaaa atgccaggag tgaagataag      2940
     ctttagtgtt gacagatctg taccgcctgt gcgcaacgcc tactacaaca tcccagctgc      3000
     gtatcgcgac aaagcacgac agagacttgc agagatggag cgacaaggaa taatagaaaa      3060
     ggtgacttca gccccacagt ggataagcgg tatgtcggcg gtcccgaaag gacaagacga      3120
     tttccgcctg gtcgtcaaca tgcgagcacc aaacaaagcg gtcctccggg agtatttccg      3180
     cttaccgctg atggacgaaa tgagagtaaa gctgcatggt gctgaatact tcacaaaact      3240
     tgacctacaa agcgcctact atcatcttga actgtgcgag gactcacgtg atctgacgac      3300
     gttcctatcg gagagtggca tgtttcgttt ctgcagacta atgttcggtg tgaatgctgc      3360
     gccagaaatt ttccaacgcg agatggtacg aatcttcaag gacgtcaaga atatcatcat      3420
     ttacattgat gatcttctga ttttcgctaa aacgattgac gagttgcgga aaactaccgc      3480
     agaggtcttg aagatactac gagcgaacaa tcttacgctc aacactgcca agtgcaagtt      3540
     tgaccagacg caagtcacgt ttctgggtca tgagttgagc gcgaaagggt tcaacatcga      3600
     gcaatccaag atcagcagca tccagaaatt cagacagcca tcgacagcat ctgaactgcg      3660
     gagtttcctg gggctcgcct ctttcgtaag cccgtatata aagaacttcg ccgggatgtc      3720
     cggccccctg tgggcggtgg tcaacgacaa caagtggcat tggggcgaag aacagcagac      3780
     cgcattcgag gcggtgaagg agaacataat tcaatcgacg ctttcgctgg gatacttctc      3840
     tgactgcgac aaaaccatcc tgtacacgga cgcttcacca tacgctcttg gtgctgtact      3900
     agtcccagaa aacgataatt cgacaccccg gattatcagt tttgcgtcta aggccctttc      3960
     tccaactgaa agaaagtacg cacagaatca gcgagaggcg ttgggagcaa tatgggcggt      4020
     ggagcatttc tcttatttct tgctgggaag acatttcgtt ctacggacag atgcacaagg      4080
     aatgtctttc atactcgacc ggccacgtga ggaatcgaag agagcgctga caagggccga      4140
     tggctgggcg ctacggctca gtccgtaccg ataccaagtt caattcgtta agggacgtga      4200
     caatattgcg gacccctcgt caaggctgta ccagggagag gacgacgaat ttgatgagag      4260
     ggcgaactct tgggaggtgt gccaactcga gctgaacaga gtggaattcc tgactgagga      4320
     cgagatcaag gagtgtactg caaaagatga caccctgcaa aaggtacttt tccacggagg      4380
     ccaaattcaa tttagtaagg tatcattcaa aactgtgatt ctttttcagg tgattgactc      4440
     gctggcctca gggaagtggt cgaacgagtt gttaagattt aaagccatcg cgagcgatct      4500
     tcactacagt gatggaatgt tgagcaaaaa tggttgtgcg gtgcttccag cgaaccttcg      4560
     tgaatcagcc ctagaagtgg cgcacgcagg acatcccctt gaagcaaaat tcaagagcat      4620
     cctgcgcaaa cgcgtgtggt ggcctgggat ggctggagat gcggagaagt gggtcaagtc      4680
     gtgctcgact tgcgcggtta acggacgacc tgagaagcca acgcccatgc agcgctcatt      4740
     cgctccaaag gccgtttggg ataccgtggc tgttgacttc aacgggccat acgcaaggct      4800
     tggtgggata ttgatcttgg tcatcattga tcttagatcc cgctatgcga tggcttaccc      4860
     tgttaagtcg actggattcg aacacacacg gacagtacta gacgcgatct tcggtagaga      4920
     aggtttccca cgggccatga aatccgacaa tggcccacca tttaatggag aggattatgc      4980
     gaactactgc tctgaacgag gtatccagac cgtattctct acgccgtttt ttccacaaca      5040
     gaatggcctt gtagaatgct tcatgaagaa cgtgaacaaa gccatgtcga ctgcactttc      5100
     tacgggtagc gattaccgga aggagcttca agcaacggta caagcataca acgccgcgga      5160
     ccacacagtc accaaagtac cacccgaaga ggtcttcagt ggtcgcaaaa tcaagcgcgg      5220
     tctgccgtta cttctccgcg gtaggacgga acatgatgat ttggtgttcg acgccaggga      5280
     tcacgaggcg aagataaaat ccaagacacg ggaagacaca cgccgtggag ctaaacggag      5340
     tacagtcaaa ccaggggatg cggtcttgat cgagcgccag tcaaaggcga agggagaaac      5400
     tcggtttgat cctaaacgct acacggtaat ggaggagcgt aacggcagtc tggttgtctg      5460
     tgatccggat ggccgccagc tcagacgcca tgttacacaa accaaaaagg ttcagcagtg      5520
     gcgagaaccc cgaccgatca tccaagaggc ccaacgttcc gacgagctgg ggtgtcatga      5580
     tcaggaagta aaggagattg atcaacagcg gccgagaaga acagtgaaga tcccctcaca      5640
     cctctcggat tatatccgtg cggttgagga agagttttga tggccaagac ggaaagcacc      5700
     aggctgttga gtgaaggaaa ataaattatg actagaactt ttttttgtgt tttttttctt      5760
     gagaaaggaa gggaga                                                      5776
//
ID   Gypsy-14_CQ-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   AAWU01010358;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_CQ_;
KW   Gypsy-14_CQ-I; Gypsy-14_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 408-408 (2011).
XX
DR   GenBank; AAWU01010358; Positions   11117   10900.
XX
SQ   Sequence 218 BP; 49 A; 56 C; 60 G; 53 T; 0 other;
     tgtgtgggtt gatgcgtatc ttcgtccgcc agactatatg ttgagtcgac atagcattgg        60
     ccagactaca acgctatctc tatgtcgacc aacggtctcc cgacgacgac gatcggatgc       120
     cgaagggcat tcgtattcag acagactcac aggtaagatg tgcaacagcg tcggtgctcc       180
     gtggtgggtg atttcccaag tggatttccg gccacaca                               218
//
ID   Gypsy-14_DAn-I repbase;    DNA;    INV; 6105 BP.
XX
AC   AAPP01018970;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DAn_;
KW   Gypsy-14_DAn-LTR; Gypsy-14_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6105
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018970; Positions  151508  145404.
XX
CC   Positions [3847-4326] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..1528
FT                 /product="Gypsy-14_DAn-I_2p"
FT                 /translation="MNFPGPYREIKKEVVSDSEEEEIRGFRPGQAQIVEKE
FT                 KIMNANELQSIIQGALAQQEARLRAEFEAQINSVNVQLQNMRVETPQVEAY
FT                 QRVSVQPGAPPCDIPLHIIKSVPDFNGEQDGYVAWRQSATDAYELFKPYQG
FT                 SCAHYQAVTIIRNKIRGPARALLVSHNTVLNFDAILARLDCSYADKTSLRL
FT                 LRQQLEAVRQSDQSLMQYYDEVERKLTLVTNKIVMSHDIERATLLNNEVRA
FT                 DALHVFISGLKKNLRAVVFPAQPKDLPSALALAREAEASIERSQFAATYAR
FT                 AMEQKTQNSDFRRTQFRTPDKQGNEKNPHYFKRPDKNQQNGSGRKPEDWAD
FT                 RGNPRQAAEPMDWNPSSSKSKQQHFKQNQYVSQPQNMQAKNSKRPNSSDRI
FT                 TDQRRQRLNNIEQTASANDQEYESAAVAAMSAIEDDSDSIDSHDLLNFLES
FT                 GPGCRSSNDSWLGGL"
FT   CDS           4805..6106
FT                 /product="Gypsy-14_DAn-I_3p"
FT                 /translation="MIDETAKLSALFPQSHMRKLLDVDTDHIRNILSVLKV
FT                 HHRIARSLDFLGTALKVVAGTPDAADLEMLKMSESRLIESNNRQVVINTET
FT                 QKQINKLTDAVNEIIKAKKNNLVDTPHLYEVLLARNRMLITEIQNLMLTVT
FT                 LAKSSIINPAIFNHEDLKSVLVDHPTEVPVISLIEASNIKVLQSDNIIHVL
FT                 IAYPKIKFNCKKVTVFPVSHQHTVLQLRDNVVAECNQGVLAITDCVSTMYG
FT                 AFCKLATQDTCARGLHAGVTAHCETQASHLSPITLVDDGIMIVNECPAVVS
FT                 TDDGPNIETNGTHLITFERLAFINGTKYLNLRESIRKTAGVAASPLLNIIG
FT                 HNHALSMPMLQRMNSQNLETIQTLKNEIKSAGSTDIWIAVGVGVSFLVSTF
FT                 ILLHLVWRRRRDAWEMQQVAETIKTTEDGLTPKGGVVNTS"
FT   CDS           1774..4563
FT                 /product="Gypsy-14_DAn-I_1p"
FT                 /translation="MQTKKILYGSVSEDLQFLDCNDVNFTNIKDIVVPESV
FT                 KKEFIDMMKKRSKVFSVANQTLPYNTNVVATIRTEDNNPVYSKAYPHPMGV
FT                 ADFVNKEIKDLLKSKIITPSRSPYNNPTWVVDKKGSDETGGRKKRLVIDFR
FT                 KLNEKTIPDKYPLPSIELILANLGKAKYFTTLDLKSGYHQIFLAEQDREKT
FT                 SFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREQIGKSCYVYVDDVIIF
FT                 SENEKEHVSHIDWVLKKLGQANMTISKEKTHFFKESVQYLGFVVTRNGATT
FT                 DPEKVAAIKEYTEPTSLFSLRSFLGLASYYRCFIKDFATIARPLTDLLKGE
FT                 NGSVSKHMSRKIPIKFNDQQRDAFDRLRNILASEDVTLKYPDFKKPFDLTT
FT                 DASAYGIGAVLSQDKKPITMISRTLKDCETRYATNERELLAIVWALGKLRQ
FT                 YLYGTRDIRVYTDHKPLTFAVSDKNPNDKLKRWKSFIDDYGAKVIYTPGKE
FT                 NFVADALSRQNINALQNEPESDCATVHSEESSTYTIETTEKPLNCFKNQIV
FT                 LEEAKYSLKRYFIFFGNKCRHIIHFTEKSTLFETLRPIINPKVVNAIHCNL
FT                 PTLASIQHALVSNFPATKFWHCKNFVSDISNKSEQIEIITAEHNRAHRAAQ
FT                 ENIKQVLRDYYFPKMSKLATEIVTNCKICTTAKYDRHPKKQELGVTPIPSN
FT                 VGEMLHINIFSTDKKLFLRAIDKFSKFAVVQPIVSRAIVDVKIPILQLINL
FT                 FPNIKTIYCDNEPSFSSETITSLLKNQYGIDVVNSPPLHSSSNGQVERLHS
FT                 TLTEIARCIKMDKQINDTVELVMRATVEYNKTLHSVINQKPIDVIHSASEK
FT                 VKEAIKINIEKAQRDNLDRCNPSRQNRIFEVGERVYLKNNKRLGNKLTPLY
FT                 TEKHVEADLGTAVLIGGRVVHKDNLK"
XX
SQ   Sequence 6105 BP; 2054 A; 1377 C; 1271 G; 1403 T; 0 other;
     actagataag tggcgcccaa cgtggggctc gaacccacga ccctgagatt aagagtctca        60
     tgctctaccg actgagctag ccgggcagaa tattcggcca tatgtattga acctcgtata       120
     aattaggtgg cataagttca agtttttaat gaactttcca ggtccgtata gagaaattaa       180
     aaaagaagtc gtgagtgata gtgaagaaga agagatccgg ggttttagac cggggcaggc       240
     tcaaatcgta gagaaagaaa aaataatgaa cgcgaacgaa ttgcaaagta ttatccaggg       300
     cgccttagcg caacaggaag ctaggctccg agctgaattt gaagctcaaa tcaattccgt       360
     taacgtgcag ttacaaaaca tgcgcgtaga gaccccacag gtggaggcct accaaagagt       420
     gtcggtacag ccaggagcgc ccccatgcga cataccgctc cacataatta agtcagtacc       480
     agattttaac ggtgagcaag acgggtacgt agcgtggagg cagtccgcca cggacgcata       540
     cgaactcttt aaaccttacc agggcagctg tgcccattat caagccgtta ccataatcag       600
     gaataaaatt aggggcccag cgcgagcgtt gttggtatca cacaacactg tgcttaattt       660
     cgatgccatt ctggcaagat tagactgctc ctacgcagac aaaacttcgt tgaggctgtt       720
     acgacaacag cttgaggcag ttcgccaaag tgaccaaagc ctcatgcaat actatgacga       780
     ggttgagcgt aagctaaccc tcgtcacgaa caaaattgtc atgtcccacg acattgaaag       840
     agccacactg ctcaacaatg aggtaagggc ggacgcacta catgtgttta tctcaggcct       900
     aaaaaaaaac ctgagagcag tcgttttccc ggcacagcca aaagaccttc cttcggcatt       960
     ggcattagct agggaggctg aagccagcat cgaaagaagc cagtttgcgg caacgtatgc      1020
     tagggcaatg gaacagaaga cacagaattc tgattttcgt aggactcagt tccgcactcc      1080
     tgataaacaa ggaaacgaaa agaaccctca ttattttaaa agaccagata aaaaccaaca      1140
     aaatggttct gggcgtaagc cagaggactg ggccgaccgt ggaaatccac gtcaggcagc      1200
     agagcccatg gactggaacc catcgtcttc taagtccaag caacagcatt ttaaacaaaa      1260
     ccaatatgta tcacaaccgc aaaatatgca ggcaaaaaat tcaaaaagac ccaactcctc      1320
     tgataggata acggatcaaa ggcgtcagcg gcttaacaac atcgagcaga ccgctagtgc      1380
     caacgatcaa gagtatgaga gtgctgcggt agccgcgatg agcgcaatcg aagacgacag      1440
     cgactcgatc gactcccatg acctcctcaa ttttttagag agcggtcccg gctgccgttc      1500
     atcgaacgac agttggctgg gaggacttta aaaattctta ttgatacagg ggcagcgaaa      1560
     agttatataa agcccgtaaa ggagcttaaa aacataacgc cagtagcctc accgtttcgc      1620
     gtgaatacaa ttcacggatc caatagcata aataaaaagt gccaaataaa tgtcttggga      1680
     acaacttccc cattcttcat attagattcc ctaacaacat ttgacgggat cataggcttc      1740
     gacttgctaa cgcaagtggg agccaccctc aatatgcaaa ctaaaaaaat attgtatggt      1800
     tccgtgtctg aggacctgca gtttcttgat tgcaacgatg taaactttac caacataaag      1860
     gacatagtcg ttccagaatc agtaaaaaag gagtttatcg atatgatgaa aaaaagatct      1920
     aaggtcttct ccgtcgcaaa tcaaacgttg ccgtacaaca caaatgttgt ggctactatt      1980
     cgcactgagg ataacaaccc agtgtactct aaagcgtacc cgcacccaat gggtgtcgcg      2040
     gacttcgtta ataaagaaat aaaagaccta ctgaagtcta agattataac cccgtcgaga      2100
     tcaccgtata ataatccaac ttgggtggtc gataaaaaag ggtcagatga gacaggtggt      2160
     aggaaaaagc gtttggtaat cgacttcagg aaactgaacg aaaaaaccat tcctgataaa      2220
     taccccttgc caagtatcga gttaatactt gcaaaccttg gcaaagccaa atattttaca      2280
     actctagact taaaatctgg ttatcaccaa attttcctcg cggaacaaga tcgcgaaaaa      2340
     acctcatttt cagtcaacgg aggcaaatat gaattctgcc gtttgccttt tggattaaaa      2400
     aatgctggta gcatttttca gagggcaatc gatgacgtat tgagagagca gatagggaag      2460
     tcgtgctacg tctatgttga cgatgtcata atcttttcgg aaaacgaaaa agagcatgtc      2520
     agtcacattg actgggtcct gaaaaaatta ggccaagcca atatgaccat ctcgaaagag      2580
     aaaacccatt tttttaaaga aagtgtccaa tacctcggct tcgtggtaac ccgaaatggg      2640
     gctacaactg acccagaaaa ggtagcagcc attaaggaat acacagaacc gacaagctta      2700
     ttctcactaa gatcattctt aggactagcc agctattata ggtgttttat aaaagatttc      2760
     gctacaatag ccaggccact aaccgacctc cttaagggag aaaacggttc cgtaagtaaa      2820
     cacatgtcta ggaaaatacc cattaaattt aacgatcagc aaagagacgc gttcgataga      2880
     cttcgaaaca ttttggcatc agaagatgtc acccttaaat acccagattt taagaaaccg      2940
     ttcgatctga caaccgatgc gtcagcttac ggcatcgggg cagtactgtc gcaggacaaa      3000
     aaacccataa caatgatatc cagaaccctt aaagactgcg agacccgtta cgcaactaac      3060
     gaaagagagt tactcgctat agtctgggct ctaggaaaat taaggcagta tctgtatggc      3120
     actcgtgaca taagagtcta cacagatcat aagccgctaa cgttcgctgt ctccgacaag      3180
     aacccaaatg acaaattaaa acgttggaaa tcatttatag atgactacgg cgcaaaagtc      3240
     atatacactc caggcaaaga aaattttgtt gccgacgcac tttcgcgaca aaacatcaac      3300
     gcccttcaaa acgaacccga atctgattgt gcaacagttc acagtgaaga atctagcact      3360
     tatacgatag aaacaacgga aaaacctcta aattgtttca aaaatcagat agtcctagaa      3420
     gaggcaaagt attccttaaa gcgatacttt atatttttcg gaaataaatg ccggcacatt      3480
     atacatttca cggaaaaatc aaccctgttc gaaacattaa gaccaatcat taacccaaaa      3540
     gttgtcaacg ctattcattg taacttgcca acattggcaa gtatccaaca tgcattagta      3600
     tcaaattttc cagctacgaa attttggcac tgcaagaact ttgtgtcaga tatttctaat      3660
     aaaagtgagc agattgaaat aatcaccgca gagcacaatc gtgcacacag agctgcccag      3720
     gaaaatatca aacaagtcct ccgcgactat tattttccaa aaatgtcaaa gttagctact      3780
     gaaatagtga caaattgcaa aatttgcact acagcaaagt atgacagaca ccccaagaaa      3840
     caagaacttg gggtaactcc aattccgtca aacgtcggcg aaatgctaca tattaatatt      3900
     ttttccaccg ataaaaaact atttttaagg gccatcgaca agttctccaa atttgcggta      3960
     gtacaaccaa tagtgtctag ggcaatagta gacgtgaaaa tccctatcct ccaattaata      4020
     aacttgttcc caaatataaa gacaatatac tgtgataacg aaccgtcttt cagctctgaa      4080
     acgatcacat cgttactcaa aaatcagtat ggcatagatg ttgtaaattc accccccctg      4140
     cacagtagtt caaacgggca agtcgaacgc ctccacagca ccctaacaga aatagcgagg      4200
     tgcatcaaaa tggataagca aattaatgat acagtggagc tagttatgcg ggcgaccgtt      4260
     gaatataata aaacattaca ttcggtcatt aaccaaaaac ccattgatgt aatccactct      4320
     gcttccgaaa aagttaagga agcaataaaa attaatattg aaaaagcgca gagagataat      4380
     cttgacaggt gtaacccatc aagacaaaat agaatatttg aggtaggaga aagagtctac      4440
     ttaaagaaca ataaaagact tggcaataag ttaactccgt tatacacgga aaaacacgta      4500
     gaagcggacc tggggacagc ggtcctcatt ggagggaggg tggtccacaa ggacaacctt      4560
     aagtaaccct tttctccaat taacacaccc aacacaaaca caaacttgga aattagccaa      4620
     tagatttaac ttgtcatttt cttacaggat cgcgggaatc atattaacaa tattagcagt      4680
     agttaacgct agagtgacag actacactca cgcccggtac atccccataa ccgacggaac      4740
     tgctttggtg tgggaacata ggaattactt taggcattcg agcaatttga cggagttttc      4800
     aattatgata gacgaaacag ctaaattgtc cgctttattc ccacaatcgc acatgcgaaa      4860
     attgttagat gttgatactg atcatattag aaatatatta tccgtactaa aggtacacca      4920
     ccgcattgct agaagcctag actttttagg cacagcgtta aaagtggtag cgggcacacc      4980
     tgatgccgct gacctcgaaa tgttaaaaat gtccgagtcc cggttaatcg aatcaaacaa      5040
     tagacaagta gttattaaca ccgaaacgca aaagcagatt aacaagctaa ccgatgctgt      5100
     caacgaaatc attaaggcca aaaagaataa cctggttgac acaccccatt tatacgaagt      5160
     tcttttggcc agaaatagaa tgctaattac agagatacag aatctgatgc tcacggtcac      5220
     acttgcaaaa tcaagtatca taaaccctgc catttttaac catgaagatt tgaagtccgt      5280
     tttagttgat catcccacag aggtccccgt tatcagccta atagaggcat ctaatattaa      5340
     agtccttcag tccgacaata ttattcacgt gctcattgca taccctaaga ttaaatttaa      5400
     ttgtaaaaag gttaccgtct tccccgtttc tcaccaacac accgttctcc aattacggga      5460
     caacgtggta gctgagtgca accaaggagt cttagcgatc actgattgcg tgtcgacgat      5520
     gtacggagca ttctgcaaac tggcaaccca ggacacttgc gcccgaggtc tacacgcagg      5580
     ggtcacggcg cattgcgaaa cgcaggccag ccacctaagc cccataacgc tggtagacga      5640
     tggtataatg atagtcaatg agtgtccggc agtagtcagc acggatgacg gccccaatat      5700
     agaaacaaat ggcacgcatc taataacatt tgagcgacta gcctttataa acggcacaaa      5760
     atacctgaac ctgcgcgaaa gcataagaaa gactgcgggc gtggcggcct cccccctgct      5820
     aaacattatc gggcataatc acgcccttag tatgccaatg cttcagagga tgaacagcca      5880
     aaacctggaa acgatccaaa ccctcaaaaa cgaaataaag tcggctggat caacggacat      5940
     ctggatcgct gtcggcgtgg gagtaagctt tttggtcagc actttcatcc tgctccacct      6000
     cgtgtggagg aggagacgag atgcatggga aatgcaacag gttgccgaaa caatcaagac      6060
     gaccgaggac ggtcttactc ctaagggggg agtagttaac acttc                      6105
//
ID   Gypsy-14_DAn-LTR repbase;    DNA;    INV; 504 BP.
XX
AC   AAPP01018970;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DAn_;
KW   Gypsy-14_DAn-LTR; Gypsy-14_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-504
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018970; Positions  145403  144900.
XX
SQ   Sequence 504 BP; 114 A; 153 C; 109 G; 128 T; 0 other;
     tgaggggtaa caaacagtcg gtagaaatct tgggtgattc ttggatcacc ctagtcttta        60
     taatgtcgac tcagcatacc cgcctttggg ggccgtgcct ggatcccact ggtttccggt       120
     atcttgcgat cgtcagcatt tcccactgtc acgcggtcgg cctgccgact aggcacccta       180
     ctgctaagtt cctcagttct gttttataat cattggaata aagagcactt agctccataa       240
     acttaactcc ggccatcgcc gttttattat ttgcattcgc ccactgagct taaggccagg       300
     ggtatagggg ggcagtcacc ctctcaacat aaaccttatt ttacacttca tcaaccacca       360
     tatcggtggc accccatcag tggccacctg ggaccagcag ccctgccgcc aattcgtgcc       420
     aaccgctact actcatcaag caccctactg gtgccacctc atcaccggcg gatctggagc       480
     agccttacca tcgagaaacg ttca                                              504
//
ID   Gypsy-14_DAzt-I repbase;    DNA;    INV; 4515 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4515
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 795-795 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           531..4514
FT                 /product="Gypsy-14_DAzt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MRKSKRIAEMMQTPPSLNWRRKEMENDLPETSSQSAS
FT                 EMADVVVAKNNADDKIDQMIKLLSLKVLNDEQREVQMKIAPDNFGKIVNEC
FT                 DGRSVPIEKWFEIFEKNADAYELTEKQKYVHARGKMTGAAKLFLEAECVCT
FT                 YEELKNVLFEEFACSYNSADIHRQLQDRKRKSTESLHEYLLQMRKIAAVGQ
FT                 IEDVAVISHIVNGLDIKNEYKYAMYRCKTFRALKEEFDIYDRLNISEKKGN
FT                 KEQHKTSFKQQSWQGAKKEYCYNCGSGEHKRKDCKAETKCFKCNQNGHISR
FT                 NCPYEADKVDNVRIISDRSRMKRVQINGIIVDCLVDTGSDVTIIKESMLKS
FT                 MKNVELFKSTTMLRGLGHTSTKPVGYFHAEVTVDNLLTNQKFLVVSSNQID
FT                 FDALLGHDFIKKFRFVADMQGYTFLKLDADPVPTDEYALVYNLTEEPSHVV
FT                 PPQYRKEVEQMIKSSYEIPTEVPKQCPIQLKIVPDGVIKPFHHSPSRLSTD
FT                 EASAVKKQVEEWIEEGIVRKSSSNVASRVVVVKKKDGTLRVCVDYRKLNSM
FT                 VLVDCFPVPIIEEVLEKLQSAKWFTIMDLENGFFHVPMEEQSKSYTAFVTK
FT                 EGLFEFNKAPFGFKNSPAAFIRFVNYIFQKLINSDVMQLYMDDIIVYASSP
FT                 EECMRKTKLVLVTAAQFGLKIKWKKCSFMQPRINFLGHIVEDGQIWPGKEK
FT                 TAAVSRFATPKDIKGVQAFLGLTGFFRKFIPGYAQVARPLTNLLRKETVFN
FT                 IGEAEQQSLQTLKKLLVIAPVLHIYSRDAPTELHTDASKDGFGAVLLQQFD
FT                 GSFHPIYYWSKKTTEAESKRHSYYLEVKAAYLALKKFRHYLLGIKFDLATD
FT                 CAAFKQTTTKADIPREVSQWILYMEDFTFKAVHRPGERMRHADCLSRFPQT
FT                 CMFVTTELTARIKKAQQDDDFIKAIVEIVQQHPYEDYKLKGGLLFKALNGN
FT                 EVLVVPRLMEREVIQASHEVGHFSTAKTMHTIQQQYWIPHLERKVTKSIAN
FT                 CISCIIFSKKLGKQEGYLHCIDKGDTPLHTLHVDHLGPMDATVKQYKYIFA
FT                 VVDAFSKFVWLFPTKSTGHEEVIKRLGDWSFVFGFPKRIVSDRGAAFTSNA
FT                 FSDFLNENKVEHVWTTTGVARGNGQVERVNRSILSIIAKLSIQESTKWYKY
FT                 VPQVQMAINSHVHSTLKSSPFEIMFGTKMNREAGSRLLEVLNEELVTQFNK
FT                 ERQDLRDQAKHNIEKAQEVYKRNYDKKRRAEHGYRVGDMVAIKRTQFIAGR
FT                 KLASEYLGPYEITKVKRNGRYDVRKVAQVEGPNITATSSDNMKLWRFVAEN
FT                 DEMLSSGTDEDEQEGR"
XX
SQ   Sequence 4515 BP; 1443 A; 886 C; 1120 G; 1066 T; 0 other;
     tttgggggct cgtccgtgtc gaataatgag ctcagagtgt gtgtggaaaa aataaaaacg        60
     aagttggctc ttgcaaaatg aggatcgctg aaaatatgtt aaagttgttg ttcatagtca       120
     cataaagttg taaagttgtc tccagtggct ataaacatta agttgaacga tccaaattct       180
     atgagcggaa cagtaggaac agagatcaat ataataatct gtcgcctaac tcagttgcaa       240
     agtggtgaaa ttcgaagtcg cgccatagcg tcgccttgtt cgtgcgtgta gcaaagttgt       300
     gaaattcgaa gtcgcgccat agtgtcgcct tgttcgtgcg tggtatacac atacattcgc       360
     agagtgacac gaacagacac gttgtgttcg gtatacacat acattcgcag agagacacga       420
     acagacacgt tgtgttcggt atacacatac attcgcagag agacacgaac agacacgttg       480
     tgttcggtac acacatataa acatataagc agaagagttt tcgagtacac atgcgaaagt       540
     caaaaagaat agcagaaatg atgcaaacac caccatcgct gaattggaga aggaaggaga       600
     tggaaaacga tctaccagaa acgtcgagcc agagtgcaag cgagatggca gatgttgtgg       660
     ttgcgaaaaa caatgctgat gataaaattg atcagatgat aaagctgctt agtttaaaag       720
     tgcttaacga tgagcagcga gaagtacaaa tgaaaatcgc tcctgataat tttggaaaaa       780
     ttgtgaacga gtgcgatggc cgatcagtgc caatagaaaa gtggttcgag atttttgaga       840
     aaaatgccga cgcatatgag cttaccgaaa agcaaaagta tgtacatgcc agaggaaaga       900
     tgaccggtgc agctaagctt ttcctagaag ctgaatgcgt gtgcacctat gaggaactca       960
     agaacgtatt gtttgaggaa ttcgcatgta gctataacag tgcggacatt catcggcagc      1020
     tgcaagatag aaagaggaag agtaccgagt cgcttcacga gtacttgctg cagatgagaa      1080
     agatagcagc agttggacag attgaagacg tagctgtcat aagccatatt gtgaacggtt      1140
     tggacataaa aaatgagtac aagtacgcca tgtatcgctg caaaaccttc agggccttga      1200
     aagaagagtt cgatatctac gatcgattga acatatcgga gaaaaagggc aacaaagagc      1260
     agcataaaac gagtttcaaa cagcaaagtt ggcaaggcgc taaaaaggaa tactgctata      1320
     actgtggatc aggagaacat aaacgcaaag actgtaaagc tgaaacgaag tgttttaagt      1380
     gcaaccagaa tggtcatatt tcgcgtaact gtccttatga agccgataaa gttgataacg      1440
     tacgcattat ttctgatcgc agtcgcatga aaagagttca gataaacggc attatagttg      1500
     actgtcttgt ggatacagga tccgatgtaa ccattatcaa agaaagtatg ctgaagtcta      1560
     tgaaaaatgt cgagcttttc aaaagcacta ctatgttgcg tggtctggga catacatcaa      1620
     cgaagcctgt aggatacttt catgcagagg ttaccgtgga taatttgctg accaaccaga      1680
     agtttttagt cgtctccagt aaccagattg atttcgatgc actattgggg catgatttca      1740
     ttaaaaagtt tcgttttgtc gctgatatgc aaggatacac gtttttgaag cttgacgctg      1800
     atccggtgcc aacagatgag tatgctcttg tatataatct cactgaagag ccatcccatg      1860
     tagttccacc tcaatatcgc aaagaagttg aacagatgat aaaaagcagt tacgaaatac      1920
     ccacagaagt tccaaagcag tgcccaatcc aactgaagat agttcccgac ggagtaatca      1980
     agccgtttca tcactcacca agtcgcttat caacagacga agctagtgct gtaaagaagc      2040
     aagttgaaga atggatcgag gaaggaattg tgcgcaagtc atcatcaaac gtggccagca      2100
     gagttgtcgt cgtgaagaaa aaagatggta cacttcgagt ttgcgtagac tacagaaagt      2160
     taaacagcat ggtattggtg gactgttttc cagtacctat tatagaggaa gtcttggaaa      2220
     agctgcagtc ggcgaagtgg tttacaataa tggaccttga aaacggattt ttccatgtgc      2280
     ctatggaaga gcagagcaag tcgtatacgg cctttgtcac aaaggaagga ttattcgagt      2340
     ttaataaagc acctttcgga ttcaaaaact cgccagctgc gttcattcgg ttcgtaaact      2400
     atatttttca aaaattaatc aactctgatg ttatgcagct atatatggac gacataattg      2460
     tttacgcctc gtcgcccgag gaatgcatga ggaagactaa gttggttctg gtgacagctg      2520
     cgcagtttgg cctaaagatc aagtggaaga aatgtagttt tatgcaacca cgcataaact      2580
     ttctaggtca tatcgtcgag gacgggcaaa tttggcccgg caaagagaag acagcagcag      2640
     tcagtcggtt tgctacacca aaagacataa aaggggtcca ggcatttctg ggactcaccg      2700
     gatttttcag aaagttcatt cctggatacg cacaagttgc gcgaccgctg acgaatctac      2760
     tcaggaagga aacagttttt aatattggcg aagcagagca acagtcgcta caaaccttga      2820
     agaagttgct tgtaatcgca ccagtactgc atatatactc acgagatgcg cctacggaac      2880
     ttcacacgga tgcatccaaa gacggtttcg gagcggtttt gttgcagcag tttgatggca      2940
     gtttccaccc gatttattat tggagtaaga agactacaga agctgagtcc aaacgtcaca      3000
     gttactattt ggaggtcaaa gcagcatacc tcgcactcaa aaagtttcgg cactacctgt      3060
     tggggatcaa atttgatctt gctactgact gtgcggcgtt taagcagaca acaacgaaag      3120
     cagacatacc gagagaagtt tcccagtgga ttttatacat ggaggacttc acattcaaag      3180
     cagtacaccg cccaggggaa agaatgagac acgcggactg tctcagccgt ttcccgcaga      3240
     catgcatgtt tgtaacgacg gagctaacag ctcggataaa gaaggcacag caggacgacg      3300
     atttcatcaa agcgatagtt gagatcgtac agcagcaccc atacgaagac tacaaactaa      3360
     aaggaggtct tctcttcaag gctttgaatg gaaatgaagt attggttgtt cccaggctaa      3420
     tggaaagaga agtcattcaa gcatcacatg aagttggtca tttttcaaca gcgaagacga      3480
     tgcacacaat tcagcaacaa tattggattc cgcacctgga aagaaaagta actaaatcta      3540
     tcgctaattg tatcagttgt ataattttca gcaaaaagct aggcaaacaa gagggctatc      3600
     tccattgcat cgacaagggt gacacgccac tacacacgct gcacgtcgat catttgggac      3660
     caatggacgc gactgtcaag caatacaaat acatttttgc tgtggtggat gcgttctcca      3720
     agtttgtgtg gctgttccca accaagtcaa cgggacacga agaagttata aagaggctgg      3780
     gcgattggtc atttgtgttt gggtttccca agcgcatagt cagcgataga ggcgcagcgt      3840
     ttacatccaa cgctttcagc gattttctca acgagaacaa agtcgaacat gtgtggacaa      3900
     cgacaggtgt ggcgagaggc aacggccagg tcgagcgggt caaccgttca attttgagca      3960
     tcatcgcaaa gctatcaatt caggagtcaa caaagtggta caagtatgtg ccgcaggtcc      4020
     agatggcgat taattcgcat gtgcattcaa cgttgaagtc gtcgccattc gagatcatgt      4080
     ttgggaccaa gatgaacaga gaagctggga gtcgcctatt ggaggtactc aacgaggagc      4140
     tggttacgca gttcaacaaa gagcgccaag atctacgtga ccaagcgaaa cacaacatcg      4200
     agaaggcgca agaggtctat aagcggaatt acgataaaaa acgacgagct gaacacggct      4260
     acagagttgg agatatggtg gctatcaaga ggacgcagtt catcgcagga cgcaagttgg      4320
     ccagcgagta tctaggccca tatgaaatca ccaaagtgaa gcgtaacggt cgctatgacg      4380
     tcagaaaggt ggctcaagtc gaggggccaa acatcaccgc aacgagcagt gacaacatga      4440
     agttgtggcg ttttgtcgcc gagaacgatg agatgttatc atctgggaca gatgaagatg      4500
     agcaggaggg ccgaa                                                       4515
//
ID   Gypsy-14_DAzt-LTR repbase;    DNA;    INV; 310 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-310
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 818-818 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 310 BP; 127 A; 48 C; 61 G; 74 T; 0 other;
     tgtaaagagc agggtatcat tagctaacac tgtcctgtta ataagatagt atcgataaga        60
     cctaaccgat atatagtaaa ccgcaacgat attataagca cctagccgat aagcgatgat       120
     catcagtaga cagtcggatg ttagaagcag cagcagaaag gcagaataag aagtagacag       180
     ttggatgttg gaagcagcag cggaaaagct aacaaaagtg gaaagacaga ttttgatttt       240
     aaacgcatac attgaactta tattcgattt aataataatt aataaactaa actacaaaat       300
     aaaccttaca                                                              310
//
ID   Gypsy-14_DBi-I repbase;    DNA;    INV; 5250 BP.
XX
AC   .
XX
DT   16-DEC-2011 (Rel. 17.06, Created)
DT   16-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DBi_;
KW   Gypsy-14_DBi-LTR; Gypsy-14_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5250
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 845-845 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2691-3197] - Reverse transcriptase
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           147..3710
FT                 /product="Gypsy-14_DBi-I_1p"
FT                 /translation="MDLIDAQQFTVVQLKRWLAALNLPTIGNKAELAARLN
FT                 GVDPLVRGTRPESPVPVDAENEDLAEHVQEFDLEDDLGEHFSAENADPRSD
FT                 QIPAVAEGVSSLQQIRAEIEAGRKELQNILGQVRAASQAVANDVISKPENC
FT                 NQAVSIEGGKQAVQCENFQEAVSGKIPNADGSAHIDSGTDIDVGNGVEQRR
FT                 MAVVNKESESPSLSLSFAKEMIMDYDGSSCANVWTQQVRNIAEMYNLDAVC
FT                 VKMVIVAKLKGIAQRWLHANATRIMEPAENLLEQLILAFGDKLSKAEARRK
FT                 FEDLKWHYGEKFAVYFEAKTMLASSINIDPDELVDQIVEGIPAQNLRDQAR
FT                 IQCFTDPKQILRAFAGIRLDKSNESASKELNKNRSSTRGFRCSNCNARGHI
FT                 AKDCRKPARNPGSCYACGKFGHFVAQCEERKGNAVNKYVRYIKIHFDSQII
FT                 SPMVTACILDSGSPISLLKISLLPREAQLHEVKEQYFGINRSPLQIYGKIL
FT                 CFVLKGTIKCYFNLTVVANESMIHDVILGRNFMQACDLNLDLRTLKMITVE
FT                 DTTKMDTTTAARDLSLRVAEVNHNIECLDDCLTDNVLELPTKVLKAEHAVV
FT                 KNHNDHNEETSQTVMRQNSENVSQTVMGQNSRSIGQTVMRQNSENVSQTVM
FT                 GQNSRSKGQTVMRQNSENVSQTVMGQNSRSKGQTVMRQNSENVSQTVMGQN
FT                 SKSRGQTVTRQNNEDIDQTVMRFNGETTEFTNAKQYSQNTQKTVIKEPTTT
FT                 GTKGQLEIENFETEILNIDFTSSETIDFNWDKSTTYEIQCRFLKILENSYV
FT                 KATRPEKPMIRAEMKLCLDNAKPFSCSPRRLSYTEKDKLQKLLDEYLKSEI
FT                 IRPSESEFASPIVLVKKKTGEIRLCIDYRKLNKTLLKDNYPLPHIDDLLDK
FT                 LVDKKVFSKLDLKNGYFHVFVDEESVKYTSFVTPLGQFEFLRMPMGIKNAP
FT                 AVFQRFVNKIFDDMIRENKVVVYMDDIMVASKDINEHLETLDEIFKRLTQN
FT                 RLELRMDKCEFLKANIKYLGFLISENGIRADDKGIEAVKNFPVPTKVQAVQ
FT                 SFLGLSSYFRRFIKDFSTIAKPLYDLLRKDKPFQFGEEEMSCFLTLKEKLI
FT                 ESPVLALYNHKDDTELHCDASALGFGAVLLQRKDDGKLHPVFYFSKRTTAD
FT                 EAKLHSFELRLWRLSMLFVDLGYTCKGNM"
XX
SQ   Sequence 5250 BP; 1925 A; 845 C; 1159 G; 1315 T; 6 other;
     agtaatcgta tgttaaaccc gacgctatgt aaaaccaggc aattgcgaat aagaagtgaa        60
     agagaacggt caagtctaat aaagttattt aattcgtgta acagtttata ctgctataaa       120
     cttcagaagt ggtcctgacc cataaaatgg atctaattga tgcacaacaa tttacggtcg       180
     tccagctcaa acggtggttg gcggcactga acttgccgac aatcggcaat aaggccgaac       240
     tcgcggcccg actaaacggc gtggacccgt tagttcgtgg aactcgcccg gagtccccag       300
     taccggtgga cgctgaaaac gaagacttgg ctgagcacgt tcaggagttt gatctagagg       360
     atgacttggg ggagcatttc tctgcggaga atgccgaccc taggtcggat cagattcctg       420
     ccgtggccga aggagtatcg tcgctacaac aaatacgcgc tgaaatcgaa gctggaagaa       480
     aggagctcca gaacattctt gggcaagtaa gagctgcgtc gcaagcagtt gccaatgacg       540
     tcatcagcaa gcccgaaaac tgcaatcaag cagtgagcat cgagggaggt aagcaagcag       600
     ttcaatgcga aaacttccag gaagctgtga gcggaaaaat accaaacgcc gatggaagtg       660
     ctcatatcga tagcggcacc gatatcgatg taggcaacgg tgttgagcaa cgacgaatgg       720
     cagttgtaaa caaagaatca gaatcgccaa gtttgtcact ttcgtttgcc aaagaaatga       780
     tcatggatta cgatggatca tcttgcgcaa acgtttggac ccagcaagta cgcaacattg       840
     ctgaaatgta caacttggat gcagtgtgcg taaaaatggt gattgtggct aaactaaaag       900
     gcatcgccca gcgctggttg catgcaaatg caacgcgtat tatggagccg gcagagaatc       960
     tgttggaaca gctgatccta gcattcggcg ataaactgtc caaagcagag gcgcgacgca      1020
     aatttgagga cttgaagtgg cattatggcg aaaagttcgc ggtgtatttt gaggcaaaga      1080
     caatgctggc aagcagcatc aacattgatc cagacgaatt ggttgaccag atagtcgagg      1140
     gaataccagc acagaatttg cgggatcagg cccggatcca atgcttcaca gatccgaagc      1200
     aaattctccg tgcgtttgct ggtatccgtt tggataagtc aaatgagtcg gcgtcaaagg      1260
     agctcaacaa gaataggagc agcaccagag gattccgctg cagtaactgc aacgccagag      1320
     gacacatcgc taaggattgt cgaaaaccag caaggaatcc aggatcctgc tatgcttgtg      1380
     gcaagtttgg ccactttgta gcccaatgtg aggaaagaaa gggaaatgct gtaaataaat      1440
     atgtaaggta tattaaaatc cattttgaca gtcaaattat atctcctatg gttacagcat      1500
     gcatcttaga ctctggcagt ccaatttcgt tgcttaaaat atctttgttg cccagggagg      1560
     cccaattaca tgaagtcaaa gaacaatatt ttggtataaa tagaagccca ttacaaatct      1620
     acggaaaaat tttatgtttt gtattaaaag gaacaataaa atgttacttt aatttaacag      1680
     ttgtcgccaa tgagtctatg atacatgatg tgattttggg tagaaatttt atgcaagctt      1740
     gtgatttaaa tttagattta agaactttaa agatgataac tgtagaagat acaaccaaaa      1800
     tggacacaac gactgccgct agggatctgt ctttgcgcgt cgctgaagta aatcataata      1860
     ttgagtgttt agatgactgt ttaaccgata atgttttgga attgccgact aaagttttaa      1920
     aggcagaaca cgcagtcgta aaaaatcata atgatcataa tgaagaaacg agtcaaacag      1980
     ttatgagaca aaatagtgaa aatgtaagtc aaacagttat gggacagaat agtagaagca      2040
     taggtcaaac agttatgaga caaaatagtg aaaatgtaag tcaaacagtt atgggacaga      2100
     atagtagaag caaaggtcaa acagttatga gacaaaatag tgaaaatgta agtcaaacag      2160
     ttatgggaca gaatagtaga agcaaaggtc aaacagttat gagacaaaat agtgaaaatg      2220
     taagtcaaac agttatggga cagaatagta aaagcagagg tcaaacagtt acaaggcaaa      2280
     acaacgaaga tattgatcag acagttatga gatttaacgg tgaaacaact gaatttacaa      2340
     atgcaaagca atacagtcaa aatacacaga aaacggttat taaagaacca acgactacag      2400
     gtacaaaagg gcaactggaa attgaaaatt ttgaaaccga aatacttaat atcgacttta      2460
     caagcagcga aactatagat tttaactggg acaaaagcac tacctatgaa atacaatgtc      2520
     gtttcttaaa aatactggaa aacagttatg tgaaagcaac tagacctgaa aaaccaatga      2580
     ttagagcaga aatgaaacta tgtctagata atgcaaaacc tttcagttgc agtcctcgac      2640
     gattatcata tacagaaaag gacaagcttc aaaaattact agacgaatac ttgaaaagcg      2700
     agataataag accaagcgaa tcagaatttg catctccgat agtattagtg aagaagaaaa      2760
     caggtgagat tagattatgc attgattata ggaaactgaa caaaacactg ctgaaagaca      2820
     attaccctct gccacacata gatgatttat tagataaatt agtcgacaaa aaagtattct      2880
     caaagttaga tcttaaaaat ggatattttc atgtttttgt tgatgaggaa tctgtaaaat      2940
     atacttcatt cgtaacacca ctaggacaat tcgagttttt aagaatgcca atgggtatca      3000
     aaaatgcacc agctgttttt caacgctttg ttaataaaat cttcgatgat atgattagag      3060
     aaaacaaagt agtagtgtat atggatgata taatggtcgc cagcaaagat attaatgaac      3120
     atttagaaac attagatgaa atctttaaaa ggcttacaca gaacagatta gaacttagaa      3180
     tggataaatg tgagtttttg aaagcaaata taaagtattt gggatttttg atttctgaga      3240
     atggcattag ggcagatgat aagggcattg aagccgtaaa aaattttcca gttcccacga      3300
     aggttcaggc agtacaaagt tttttgggac tttcttcata ttttcgaagg tttataaaag      3360
     atttctctac aatagcaaaa cctttgtatg acttgttaag gaaggacaaa ccatttcaat      3420
     ttggtgaaga agagatgagt tgttttctca cgttaaagga aaaacttatt gagtcaccag      3480
     tactggcgtt atataatcac aaggacgata cggaattaca ttgtgacgca agcgctctag      3540
     gattcggtgc tgtactgttg cagaggaaag atgatggcaa gttacatccc gtgttctatt      3600
     tctctaagcg tactacagca gatgaggcta agttacatag ttttgagctg agactttggc      3660
     ggttatctat gctcttcgta gatttaggat atacttgcaa gggaaacatg taaaattggt      3720
     aaccgactgt atgcacttaa gttaacactc cataaagcag aacttaaccc gaagatatca      3780
     agatgggctt tggagmtgsa aaactatgat ctgagatagt cacagagcgg gaaataaaat      3840
     gcagcatgtg gatgctctca gcaggtacaa taatatctaa cagtggaaac caacagcttt      3900
     gaagaataat ttagtcatct gtcaagsaaa ggatttaaaa attaagaagc ttaagacgat      3960
     tttagagaag gcagaactta aattatttga aatgagaaat ggggtagtgt acagaaaagc      4020
     aaatgacgat aggatactat tctatgtgcc agaagaaatg gaagatcagg tactatataa      4080
     ataccacaac gaaataggac atataggaag agataaaatg atggacgcaa tttcaaaaac      4140
     tattggtttc caaacttaaa agaaaagtgc gttggacata tgaaaattgt ttaaagtgtg      4200
     tagcgttttc ccaaaatcag gaaacagaag gttttttgca cagtattcca aaaggggaca      4260
     aaccattcga gttaatacac atagaccatt atggccagta gactcgtcaa gagcaaaaaa      4320
     acacattttt gtggtagttg acggattcac aaagtttgta agactttatt caactaaatc      4380
     aacaagcacw agggaggtta taacggcatt gaaagattac tttagggcct atagtaggcc      4440
     aaagtgcatt atttcagaca ggggtagttg ttttacatct aaagacttcg aagaattctg      4500
     gaagaatgta atgtgaagca catmaagata gccacaggct caccacaagc caatggtcaa      4560
     gttgaaagga ttaacaggag ccttggacca atgatagcaa aattagttga tcaaagtaaa      4620
     ggtgtatact gggacaatgt tatagataaa atagaacatg ctttaaataa tacgttgcac      4680
     agaagtataa gacaacttcc gagtaaaatg ctgtttggag tagaacaaaa aggaaagatt      4740
     gtggatgaac ttaaggaaaa gctagaggac ataaatgaaa ataagaaatt agatagttta      4800
     acaaagataa ggaaaaaagc tgaggcccac caaaagcaag ttcaagatta taatgaaaat      4860
     tgtatgacaa aagtcgagta aaggctagaa attataaaaa aggagactat gtaatggtga      4920
     aaaattttga ctcgactgtt ggagctgcta gaaagctgat tcccaaacat aaaggaccat      4980
     atgtgattgc aaaagcgatg cgcaatgaca gattcttatt gaaagacgtc gaaggttttc      5040
     aagtagcacg tagtccttat ctaggtgttt ggagtgcgca aaatttaaga cattggataa      5100
     aaactaaaaa agctaaaaaa cagaaataaa aatgtaacta taacgagaaa ataccactta      5160
     agtatctata tattgtaagg ataaaatwag cataaacttt aacgtcaaaa tgtcttgatc      5220
     aggtgatcaa ccggtccagg atggccgaat                                       5250
//
ID   Gypsy-14_DBi-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   16-DEC-2011 (Rel. 17.06, Created)
DT   16-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DBi_;
KW   Gypsy-14_DBi-I; Gypsy-14_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-227
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 846-846 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 227 BP; 72 A; 38 C; 42 G; 75 T; 0 other;
     tgtagtagga taagtgactt gctataagta taactaagta caactctgct atgtatatgt        60
     ataggtaact ctaacctttc gatgtaagtg tatattaact agtatttgaa tgtaacggct       120
     agctattcaa tagtctctag catctacaag tatcttctgt gataaagcgg ccaatctggc       180
     aactctggta aaatgttaag tatcgatatt gatcgcagcc aacttca                     227
//
ID   Gypsy-14_DBp-I repbase;    DNA;    INV; 4185 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4185
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 677-677 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           150..1658
FT                 /product="Gypsy-14_DBp-I_1p"
FT                 /translation="MDKRRTVGQAEKSXGEEVKQEISDNQSTPRGSLAESG
FT                 CTVEPNTTASTDKRKAVFQTCGVAMAGVGTLEPFDLLTPGKWKAYRDRFEL
FT                 YLLANGVVDKDRKKAAFLTLAGAPLYELLVSLASPRQVSDLELTEVYDILT
FT                 SHLAPRQSEIAAFYHFHKRDQQPDESVGNYMATLRSLAVGCNFGQMLDRML
FT                 RDRFVCGMRDEGLQRSLLADPELTVQRAMERAVTSEAAAASALSIRGDNIR
FT                 RLESSSTESIHGISSSCAGCGGRHVRKKCPFRNATCHSCGRTGHIRRVCRS
FT                 NSQAGSTKSSSPTPSNMRNNRPSHGRVHQIVPVVSPKKSVAVVINGRSCQF
FT                 EVDSGSPVTIMKESSYRYIWPNGNPDLVKCHLKLSDYQRNPIPVKGITDTS
FT                 IHYNNRRICNLPLVVTSGTGTNLLGCNWFEPLGIRIEGIHGVQCGNGIAEI
FT                 LRKFDHLFSSELGRYTGPPVALKVDQEVPPVRLPPRRIPYALLKPYEEDWT
FT                 VSVPRNT"
FT   CDS           1713..4178
FT                 /product="Gypsy-14_DBp-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MVPSICGDYKSTLNRAVQPHCHQIPAINTLLASIEGG
FT                 SIFAKIDLAQAYQQLVVDEKSALMQTIATHKGAFKVTRLQFGISAAPGIFQ
FT                 SCIERILQNIPGVLPYFDDIVIMGKSEEELASRLGEVLARMDQAGLRLRKD
FT                 KCQFGVSSIEFLGFKVDALGIRPSADKVRAIHEAPPPKERKQLQAFLGLTN
FT                 FYHSFLPQKATIAEPLHRLLDKNVQWTWRPEHQKAFAELKNLIASDAVLIH
FT                 YSPDRPLILTCDASPYGLGAVLSHEMEDGTQKPIAFYSRTLSKAERNYSQI
FT                 DREAVALVAGVKKFHNYLYGRKFTLITDHRPLLGIFATEKPIPQIISNPMM
FT                 RRAIFLRAYKFKLIHQPGTKISNADFLSRCPTSDIHYEPRTEEVFMIEWAT
FT                 DPTVTANTLATNTSKDCSLRKVLNWVLRGWSSAKVQRNDDLYPFFVRRNEL
FT                 TSNQGILFWGNRAVIPLTDRQEILSALHAHHPGIVRMKALARSYVWWPGLD
FT                 ADIEKAVSQCLACQHTRNSPPRSDVHHWESAKKPWSRLHIDFAGPFRGNTF
FT                 VLVVDSFTKWLEVCLVKSTSASAAITFLRQLFATHGIPDEIVSDNGTAFTS
FT                 EEFMLFTKNNRIRHIRSAPFHPATNGQAERMVQTTKSYLKKLDRQTDVNLA
FT                 LARFLFDQHTTPHSVTKHSPAELLFNRELQTFFDKLSPGERSYGKICDAQT
FT                 KKSFVTGSPVWVRNYASGPKWLEGHVSKRTGPISYSVCLEDDRTVRRHLDQ
FT                 LRLRSPSQQPTPEQTASPTCCSTPTPTDAVAGGSSTPAGPQRLPEQDGTEG
FT                 PPRRSARDRRRPQFYDPSGC"
XX
SQ   Sequence 4185 BP; 1130 A; 1068 C; 1040 G; 945 T; 2 other;
     ttggcgacga ggatgggatw ctaatccccg agcgtaagct aattaaattc aacaattatc        60
     gtacagggag aaagagagac ggaattgacg gtgacgagta tttaccgtac gtccaattgc       120
     ggtagtcgta ttattcttga agcaagcaca tggataagcg ccgaactgtc ggtcaagctg       180
     agaaaagckc cggcgaagag gtaaaacaag aaataagtga taatcaatca actccacgag       240
     ggagtctcgc tgagagcggc tgtacagttg agccaaatac tacggccagt acggataagc       300
     ggaaagcggt cttccaaact tgcggagtcg ccatggcggg agttggaact ctggaacctt       360
     tcgacttgct aacccctggg aaatggaagg cgtaccgaga tcgcttcgag ctgtaccttt       420
     tagcgaatgg cgtcgtggac aaggatcgga agaaggcggc gtttcttaca ctagcgggcg       480
     caccccttta tgagttacta gtgtcgttag catcacccag gcaagtcagt gatttggaat       540
     taacagaagt ctatgatata ttaaccagtc acttggcacc acgccaatcg gagattgctg       600
     cattctacca tttccacaag cgtgatcagc aacccgacga gtccgtcggt aactacatgg       660
     ccacattaag aagcctggcg gtagggtgca atttcgggca gatgctggat cgcatgttgc       720
     gggaccgatt tgtgtgtggc atgcgcgacg aaggtcttca gcgaagcctg ctagccgacc       780
     ccgaattgac ggtgcagcgg gccatggaac gagccgtcac tagtgaagca gccgctgcga       840
     gtgcgttgtc gattcgaggc gacaatatcc gacgcctcga gtcttcgagc accgagtcca       900
     tccacggaat aagttcgagt tgtgcgggtt gtgggggtcg gcacgtccgt aagaagtgcc       960
     cgttccgcaa cgccacttgt cattcctgtg gtcgaactgg ccacatacgt cgggtatgcc      1020
     gcagtaacag tcaagctggg tcaacaaaat cgtcatctcc tacgcccagt aatatgcgta      1080
     acaacaggcc atcgcacgga cgcgttcatc aaatagttcc ggtggtcagc cccaagaaat      1140
     ctgtggccgt ggtcatcaac ggtcgatcat gccagttcga agtggattcc gggtcgcccg      1200
     tcaccatcat gaaggagtct tcgtatcgat acatctggcc aaacggtaat cccgatctcg      1260
     tcaagtgcca cctaaagcta agcgactatc aacgtaaccc cattccggtc aagggaatca      1320
     ccgacacgtc aatccactac aacaatcgcc gtatctgcaa tctgccattg gtcgtcacgt      1380
     ccggcaccgg gacaaacctt ctaggatgca actggtttga acccctcgga atccgcatag      1440
     aaggcattca tggcgtgcag tgcggcaatg gtatcgcgga aattctaaga aaattcgacc      1500
     atttgttttc atcagaactt ggccggtata cggggccgcc agtggccctc aaagtggacc      1560
     aggaagttcc gccggtcaga ctaccaccgc gtcgaattcc ttacgcactc ctcaagccat      1620
     atgaagaaga ttggaccgtc tctgtgccaa ggaatacttg acctgtagag tactctgagt      1680
     gggccctccg actgtcccca tagtcaagaa agatggttcc atcgatttgt ggagattata      1740
     agtctacgct taacagagcg gtacagccgc actgccatca aattcctgca atcaacacgc      1800
     tattagcttc gatagaagga ggctcaattt tcgcaaaaat agatttggcc caagcgtatc      1860
     aacaattggt agtagacgag aaatcagctt tgatgcaaac aatcgctact cacaaaggag      1920
     catttaaggt aacaagactg caattcggaa tttcagctgc cccaggaata ttccaaagct      1980
     gcattgaaag aatactgcaa aatataccgg gcgtccttcc gtattttgac gatattgtaa      2040
     ttatgggtaa atcagaagaa gaacttgcga gtagattagg cgaagtgcta gcccgtatgg      2100
     accaggcagg attacgtctg cgcaaggaca aatgtcagtt tggggtatct tccatcgaat      2160
     ttcttggatt caaagttgac gctctcggca ttaggccatc agccgacaaa gttagagcca      2220
     tccatgaggc gccaccacca aaagagagaa aacagttgca agcgtttctg ggactgacca      2280
     atttttatca ctcattcttg ccccagaaag ccaccattgc ggagccatta catagacttc      2340
     tagacaagaa cgtacaatgg acatggcgtc cagagcacca aaaagcattc gcagaactaa      2400
     agaatctgat cgcatcggat gcggtcctaa ttcattactc tccggaccgc ccactgatct      2460
     taacttgcga tgcgtcacca tacgggttag gagcagtgct tagccacgaa atggaagacg      2520
     gaacacagaa accgattgcg ttttactctc gcacgctgtc aaaggcagag aggaactact      2580
     cccagatcga cagagaagcg gtagccttgg tcgcaggtgt caaaaaattc cataactatt      2640
     tatatggaag aaagttcacg cttattacag atcatcgccc actgcttgga atttttgcga      2700
     cagaaaagcc aatccctcaa atcatttcca acccgatgat gcgtcgagca atttttttga      2760
     gagcgtataa attcaagttg attcatcagc ctggaacaaa aataagtaat gcagatttcc      2820
     taagccgctg cccaacgtcg gatatacact atgagcctag aacggaagaa gttttcatga      2880
     tcgaatgggc aactgatccc actgtcaccg cgaacaccct agctaccaac acgtctaagg      2940
     attgcagcct cagaaaggtg ctcaactggg tgttaagggg atggagtagt gctaaagttc      3000
     agcgtaatga tgacctgtac cctttcttcg ttcggcgaaa cgaactgacc agtaaccaag      3060
     gaatattatt ttggggtaat cgagcagtta ttcccttgac ggacaggcag gaaattctct      3120
     ctgcgttgca cgcgcaccat cccggaatcg ttagaatgaa ggctttagcc cgcagttacg      3180
     tctggtggcc cggtctggat gcagatatcg agaaggcggt gagtcaatgt ttagcgtgcc      3240
     aacatacgag aaattccccc ccacgatcgg acgtacatca ctgggagtct gccaagaaac      3300
     catggtcccg cctgcacatt gattttgccg gacctttccg agggaacacg tttgtgttag      3360
     tcgtcgactc ttttacgaag tggcttgaag tctgcctcgt aaaatcgaca tccgcgtcag      3420
     ctgcaatcac cttccttcgg caactgttcg ccacccatgg cattccggat gaaatcgtgt      3480
     ccgacaacgg aactgctttc acctccgagg agtttatgtt gtttacgaaa aacaatcgga      3540
     tccgtcatat ccgatccgcg ccgttccacc ctgcaaccaa cggacaggct gaacgaatgg      3600
     ttcaaaccac gaagagttac ctgaagaaac tagatcgtca aacagatgtc aacttagcgt      3660
     tagctcgttt cttgtttgac cagcacacta cgccccattc cgttacgaag cattcgccag      3720
     cggagttact attcaatagg gagctccaga cattctttga caaattaagt ccaggcgaaa      3780
     gatcatatgg taagatctgc gatgcccaaa ctaaaaagtc ttttgttaca ggcagccctg      3840
     tttgggtccg aaactatgca agcggtccca agtggcttga gggccacgtc tcgaagcgaa      3900
     cgggaccgat ttcctattcg gtgtgtctcg aggacgaccg aacagtcagg cgacatctgg      3960
     atcagctgcg attgcgcagt ccttcgcagc agccaacacc agagcagaca gcatcaccaa      4020
     cttgctgttc cactccaacc ccaactgacg cagtagctgg cggatcctca actccagctg      4080
     ggccacagcg cttgcctgag caagacggga ctgaaggacc gccacgcaga tcggcccgtg      4140
     accgtcgtcg gccccagttc tacgatccgt ctgggtgtta agggg                      4185
//
ID   Gypsy-14_DBp-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-211
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 678-678 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 211 BP; 55 A; 53 C; 34 G; 68 T; 1 other;
     tgttatgtat gcgactgcat tctctcgtgc ggcgatctcg ttcgactgaa gtcagtcttc        60
     actcaatcgt gagcccctgc agatcgagct gcagtcacgg ccatccatca attccccgtc       120
     attataataa cccccwgtac taattgttac ttccattttc attactgaat tatattgaat       180
     aaatttaata tatgcttgcg catacataaa a                                      211
//
ID   Gypsy-14_DEl-I repbase;    DNA;    INV; 4313 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DEl_;
KW   Gypsy-14_DEl-LTR; Gypsy-14_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4313
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 536-536 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3359-3820] - Integrase core
CC   LTRs are 94% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           418..2139
FT                 /product="Gypsy-14_DEl-I_1p"
FT                 /translation="MLKDYFGIYVLISGKIMTELKPFLCQAMDKALWRTEW
FT                 EMWLRAFTIYVDTEEITNVYKKRNKLLHLGGPQLQAVVYSIPGALIPYDDK
FT                 AKNDVFTPLVRKLNEYFSPLRNSAFERHLFRSMTPVEGEGFTEFLLRLRQQ
FT                 IAKCSFGETKRQIEEICLIDKIIDVWAPLDLKKKLLENEQTLEEVVKTCCI
FT                 DEQVNKQTQSMAAPTTSSSINKIIQHGTGMECGRCGRRGHRENSAECPARN
FT                 MRCRKCDRLGHFYKKCRTRVRKSIFGMEEPDRKRRRQGNTRIQSISNETQN
FT                 EYGDSKPTNLFRVANEQSGEEEILCKISGHTVAMIIDSGSKYNLISHSDWQ
FT                 QLREGKAVMFNVRTESVNQFRAYASDRLLKVLQIFEAPISVRNDSELIATF
FT                 YVIENSKQSLLGRDTAIKLNVLRLGLSVHRVEKVEPFPKWRDVSVKLSIDE
FT                 SITPIQQPIRRVPTALEEKIDKKLEEALSMDIIEPVSGPSAWISPVVIAFK
FT                 DDGDIRLCIDMRRANKAIQRENYPLPTFDNFMTKLRGAKHFSRLDLKNACY
FT                 QLELAESSRGITTFITHRGLFRYKRLM"
FT   CDS           3227..4312
FT                 /product="Gypsy-14_DEl-I_2p"
FT                 /translation="MKRRLRSKVRWPCLDKDAEQCVKACRDCLIVSMPSRP
FT                 APMQRHPFPDGPWKCLATDLLGPLPNGENILVLIDYYSRYIEFKLIRSISS
FT                 KTIIDEMEEIFSRLGFPETLTTDNGRQFVSAEFKSFCHTNGIRLMPTPPYW
FT                 PQANGEVENMNRSLVKRLKIAHANNDSYKKEIQKFVLMYNVTPHGTTGAPP
FT                 TELMFNRVIRDKIPSIQDLVGEMADSEEKDRDLLEKEKGKQYADKSRSAGN
FT                 LDIRIGDKVLLKNVVFPHKLTPTFDTTTYEVTKREGNVVQILGGGKTYTRN
FT                 VGHLKKIVETKSSMLTNPVDVDPILQPTPETLSSQDVSKFYALTGQEDSMS
FT                 SKQHIPNEDLRLRLKKKEG"
XX
SQ   Sequence 4313 BP; 1462 A; 804 C; 987 G; 1060 T; 0 other;
     ctggcgacga ggataaaacc ggagattaag tttgtgctaa cctttttgca agaaaaagat        60
     aatcgaatcg attaaaccag caaactttaa gtgtgcgaag gaaatgtaag tagaaaaaag       120
     aagaagaaga cacaggcacg cagcattgcc agagtgaaaa acccttgcca aatggaagga       180
     ttaaagaaat gaaaaaaaga gagagtctat tccaaatgga atgagatcca aaaaaaaaaa       240
     taaagagtct attccaaatg gaatgagaac aaattccaaa tggaatgagc ctaagctaaa       300
     aaaaataaat aaagagtcta ttccaaatgg aatgagatca aggaaaggaa gtaaaagcct       360
     taagttatct gttcctaatg gaataagagc aaaagaaaga gaatacagaa aagcccgatg       420
     ttgaaggact attttgggat ttatgtttta atttcaggaa aaattatgac ggagctgaaa       480
     ccttttctat gccaggcgat ggacaaggcg ctatggcgta cggagtggga aatgtggctg       540
     cgcgcattta ctatatatgt ggacacggag gagatcacaa atgtgtataa aaagaggaat       600
     aaactccttc acttgggtgg acctcagctt caggcggttg tgtatagcat tcccggcgcc       660
     ttgataccat acgacgacaa ggctaaaaac gacgtgttta ctcctttggt aaggaaacta       720
     aatgagtatt tttcaccgct gcgcaattcc gcgttcgaaa ggcacctgtt tcgatcgatg       780
     acaccggtgg agggagaagg ttttacggag tttttactta gattacgcca acaaatcgct       840
     aagtgttcat ttggtgagac taagagacaa atcgaagaga tctgtttaat cgataaaatt       900
     attgatgtct gggccccatt agacttaaag aagaaattgc ttgaaaatga gcaaactttg       960
     gaggaggtcg taaaaacatg ttgcatagac gagcaagtaa acaaacaaac gcagtctatg      1020
     gccgcaccaa ctacctcaag cagcattaac aaaattatac agcacggtac gggtatggag      1080
     tgcggaagat gtggtagaag agggcatcgg gaaaacagcg cggaatgccc cgctaggaac      1140
     atgaggtgca gaaaatgcga tagactcggg catttttata agaaatgtcg tacgagggta      1200
     cgaaaatcaa tcttcggtat ggaagaaccg gatcgaaaac ggcgacgtca gggaaatact      1260
     aggatacaat caataagtaa tgaaactcaa aatgagtatg gcgattcaaa gcctaccaac      1320
     ctgtttagag tagcaaatga gcaatccggc gaggaagaga ttctgtgtaa aataagtggt      1380
     catacggtcg ccatgattat tgattcgggc tcaaagtata acctaatcag tcattcggat      1440
     tggcaacaat tgcgcgaggg aaaagcagtc atgtttaacg ttcgcacaga atcagtaaac      1500
     caatttagag cttatgcctc agaccgtctt ctcaaggtat tacaaatttt cgaagcaccg      1560
     atttcggtac ggaacgattc tgaactgatt gctacttttt acgttattga aaatagtaaa      1620
     caatctttgt taggacgtga cacagctata aaactcaacg tcttaagact gggactaagc      1680
     gtacatagag ttgaaaaagt tgaaccgttt cccaaatggc gtgatgtttc agtcaaactt      1740
     tcgattgacg aatccattac tcccatccaa caacccatta ggcgtgtacc gacagcgttg      1800
     gaagaaaaaa ttgataaaaa actggaagaa gcattaagca tggacattat tgaacccgta      1860
     tctggtccaa gcgcctggat atcacctgtg gttattgcat ttaaagatga tggtgatatt      1920
     cgtttatgca tagatatgcg gcgtgcaaat aaagctattc agagagaaaa ctacccattg      1980
     ccaacttttg ataattttat gactaaacta aggggtgcca aacatttttc aaggctcgac      2040
     ctaaaaaacg cctgttatca attggaattg gccgaatcca gcagaggaat tacaacattt      2100
     attacgcacc gtggcttatt tcgatacaaa cgtttaatgt gaactcggca cctgaaatat      2160
     tccaaaggtt gatggaaaac tcttatctcc ttgtcaaaat gccttaaact acattgacga      2220
     aaaatggtaa ggacaatttt gaaaaataat aatgtcttgc tgaacgaaaa gaaatgtaca      2280
     ctaagaactc agaaattaaa atttttaggc cacattttgt ccgatcaagg gatcgaagtt      2340
     gacccagaaa aagttaaggt tattactgag ttcagagctc ccaaaaataa agaagaaata      2400
     cgcagtttcc ttggtctagc tacatacgtg gctaaatttg tggttgactt ggcagacagt      2460
     actgagccat taaggaaatt actaaagagt catgaaccat ttgcttgggg taaagagcag      2520
     gatgaagcat ttaaagtatt aaaagaaaaa attgcggcag taccaaaact ctcatacttt      2580
     aaccctaaag acaaaacgtg tttaattgcg gatgctagtc cggtggctct tggtgctgtt      2640
     tagtacagtt tgacaaatct aacagcccac gaataatatc atttgccagc aagagccttt      2700
     caccggtaga aaagagatat tcgcaaaccg aaaaggaaag cctggcgtta gtgtggggtg      2760
     tggaaaaatt ttatttttat ttggctggtt tgaaatttga cttaataact gatcacaagc      2820
     cgttagagac gatctttaaa ccaacatcac gacccccggc tagaattgaa aggtggttgc      2880
     tgaggttaca atcttaccgt tttcatgtta tttataaaac gggaaaagaa aatattgctg      2940
     actcgctgtc aagactgtgc caacatactg atgcagaacc ttatgactgg gctggagagg      3000
     agcatatttt tcgcgtactg tcaacatcca tacctaaatc catctccata tctgaagtca      3060
     gcgaatgagt gtcctagatg aggagatggt ggatgcaatg agccgcccgt cccgcgggga      3120
     gcgctgtgcg gtgtatccta cttcgaggca cccggttagt aattccacga aaactacgag      3180
     gtgtaatcct taacctgctc acgaagggca tccaggaata agtgccatga aacgaagatt      3240
     gcgttcaaag gttcggtggc catgtttgga caaagatgct gaacaatgcg ttaaggcgtg      3300
     ccgagattgt cttatagtgt caatgccatc aaggcctgct ccgatgcaac gacacccgtt      3360
     tccggatgga ccctggaaat gtctagcgac tgatcttttg ggaccattac ctaacggtga      3420
     gaatatatta gtcctcatag attattactc aaggtatata gaattcaaat taatcagatc      3480
     tatatcatcc aaaacaatta ttgatgagat ggaggagata ttttcacggc taggatttcc      3540
     agagacgcta acgactgata atggtaggca atttgtaagc gctgagttca aaagtttttg      3600
     ccacacaaac ggaattaggt taatgcctac acctccctac tggccccagg ctaacggcga      3660
     agtagagaac atgaaccgat ctcttgtgaa acgtttgaag atagctcacg cgaataacga      3720
     cagctacaag aaagaaatcc agaaattcgt attgatgtac aatgttactc cacacggtac      3780
     cacaggcgct ccaccgacgg aactaatgtt caacagggtg attagggata aaattcctag      3840
     catccaggat cttgttggcg agatggcaga ctcagaggaa aaagacaggg atctgctgga      3900
     aaaagaaaaa gggaaacagt atgcagacaa atccaggagc gcgggaaact tggatattcg      3960
     aattggcgac aaagtacttc taaagaacgt agtattccca cacaaattga cacctacatt      4020
     tgatacgacc acttatgagg ttactaagcg agaaggaaat gttgtccaga tactcggggg      4080
     tggtaagacg tacaccagaa acgttggtca tttaaaaaag atagtagaga ctaaatcgtc      4140
     tatgttgaca aatccggtgg acgtcgaccc aatccttcag ccgacaccag agactttaag      4200
     ctcacaggat gtctcgaaat tctatgcttt aacgggacag gaggattcga tgtctagtaa      4260
     gcagcatata ccaaacgagg acctgagact ccgtctaaag aaaaaggaag ggg             4313
//
ID   Gypsy-14_DEl-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DEl_;
KW   Gypsy-14_DEl-I; Gypsy-14_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-212
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 537-537 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 212 BP; 54 A; 41 C; 56 G; 61 T; 0 other;
     tgtggcgatc tgtaccagca gagagcggcg ctaaggagaa gagtaatgtt ctctccctat        60
     ctccacagta ggtttggctg gtactttgcc aatcggttgg caacgcctta ttattagttc       120
     cagagtcacc ggccagagcg gatggccaat aaaggatata attattagtt gatataaagt       180
     gtttcattca gtgggagatc gtggtcttta ca                                     212
//
ID   Gypsy-14_DEu-I repbase;    DNA;    INV; 4797 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.06, Created)
DT   29-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DEu_;
KW   Gypsy-14_DEu-LTR; Gypsy-14_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4797
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 875-875 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2061-2483] - Reverse transcriptase
CC   Positions [4040-4354] - Integrase core
CC   'TTAT' target site duplication
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..2032
FT                 /product="Gypsy-14_DEu-I_1p"
FT                 /translation="MKYADILNLTMEELSNWLSEKHVPLTGKENIHQLRGM
FT                 VKTMVGDQDDAALVEAGERNDDIGVAESVAESRAENVVGRECEQEDRGPSE
FT                 MAEIMRQMTLYTARKDLVELKAKVAALEGNSLDCKPVVDVRDLEASLRKFS
FT                 GDDNMSVHVWIRDLELAAVTHGLSNSQRWLLGNRMLEGSARSYVMFEKPAT
FT                 WKELCESLLKTFGFRMTNHQVAKQLQSRSILANESLLQCFIAMRHIAEQGT
FT                 FEETDIIKYIVDGLQDNSGCAAPLYYCASLDELREKMIRYQMVQPEDRRKT
FT                 SGLVRPVAPLRQVPATKPTHAGGDVANVRCFNCRAMGHFSSQCKKPKRPEG
FT                 ACFHCFETGHQYRRCPKRVRTAALSTCDGQDEKEDDDDAVGGNPYIQLVSI
FT                 RILSEEGCIDIDNIFALLDTGSPVSFVSRGVIPQAVKDEHLVKSSFRGLSG
FT                 QNILTFGKIKIVLLFQEEYYSIEAFVIPNFILPTPILLGRDVLKLLSLKLV
FT                 KRKNVMKTDLNKLSLNKTIALSTDLICASLFTSTYKLDNNIMTSRENYLRV
FT                 NAPATPAKPQIFQEWMQDFANRRVSNEDDVVKVGSEFGGALMRECREIVYK
FT                 QYIDRFSKSYGAPKCKMCIRLTDSTPFYCAPRRLSYREREIVSETVNDLLT
FT                 NRIIRPSNSPYASAWF"
FT   CDS           2061..3812
FT                 /product="Gypsy-14_DEu-I_2p"
FT                 /translation="MCVDYRGLNKKTARDNFPLPLIEDCLEYLEGKSVFSV
FT                 IDLKSGFHHIGVEEESVKYTAFVTPDGQLEYLRMPFGLKNGPAVFQRFISD
FT                 ALRDFVRNRQIVVYMDDIILASYSVEEHKKILAGLLDRLVEFNLEINFKKS
FT                 SFLQKRIDYLGYDVSVQGILPNDTHLTAIKQYPEPINSKTLRSCLGLFSYF
FT                 RKFVPNFSRVAKPLTDLLKKGGPFPMSDSEKRAFLQLRTALSSPPVLSIFN
FT                 PQYETELHTDASSHGFGAVLMQRQPDKKLHPVFFYSRKATAAESRYHSFEL
FT                 ETLAIIYALRRFRIYLEHKPFLIVTDCSSLVQTLSKKSINPRIARWSLELE
FT                 SFNYSIAHRPGSNMAHVDALSRQTEMLREVEGISDPCPILSRDVAPFGPCS
FT                 PIKPCASFKPCGPTAPCVVSDPGKSCEPCKIDEPCKPCEPRGPCEPIEPCE
FT                 PCKPCEAFRPCRSTDSCEPRKHDVPCGPEKRVKSVRFAPEVEEIVGIVGAY
FT                 PYDIDLLLQTEQIRDPEIRRVRGKLEMGEIENFVLLDGIVHRAKDSDKLCM
FT                 YVPSRMQEELIEFHEKLGHFATDKCVNKLREKYWFPV"
XX
SQ   Sequence 4797 BP; 1377 A; 948 C; 1169 G; 1301 T; 2 other;
     aaccaggtgt ggggttcgcc caaaacatta tttcgtcatg aaatacgccg acatactcaa        60
     cctgacaatg gaggagttgt ccaactggct ttctgagaag cacgtgccgt tgaccgggaa       120
     ggagaacatt caccagttgc ggggaatggt gaaaacaatg gttggagacc aggatgatgc       180
     cgccttggtg gaagccggag agcggaacga cgacattggc gtggcagaga gcgtggcaga       240
     gagcagagcg gagaacgtcg tgggaaggga gtgcgagcag gaggatcgag ggccaagcga       300
     aatggctgaa atcatgaggc agatgacgct atatacagca cgaaaggacc tcgttgagtt       360
     aaaggcgaag gttgccgctt tggaaggcaa ttcgctggac tgcaagcccg ttgttgatgt       420
     cagggatctt gaggctagtt tgcgcaaatt ttctggagac gataacatgt ctgtgcacgt       480
     ttggattcgt gacctcgagc ttgctgcagt tacgcacgga ttaagcaact ctcaacgttg       540
     gctgttgggc aatcggatgc tggagggctc ggcccgctca tacgtgatgt tcgagaaacc       600
     cgctacttgg aaggagctat gcgaaagcct actaaaaacc ttcggattcc ggatgaccaa       660
     tcaccaggtg gcaaagcagt tacagagccg ttcaattctg gcgaacgaat cgttgttgca       720
     gtgttttatt gcgatgcgtc acattgcgga gcaaggaacc ttcgaggaaa cagacatcat       780
     aaaatacatt gttgatggtc tgcaggacaa ttccggatgc gcagcgccat tgtattattg       840
     cgcttccttg gacgagctgc gcgagaagat gatccgttac cagatggtac agcctgagga       900
     caggcggaag acatcgggat tggtacgtcc agttgcacct ctgcggcagg tgcctgcaac       960
     aaaacctaca catgccggag gagatgttgc aaacgtaagg tgcttcaatt gccgagcgat      1020
     ggggcacttc agcagccagt gcaaaaaacc gaagcgcccg gagggagctt gttttcattg      1080
     tttcgagact ggacaccaat atcggcggtg ccctaagcgt gtgcgaacgg ctgccctcag      1140
     tacttgtgac ggacaagacg agaaggaaga cgacgacgac gccgttggtg ggaatccata      1200
     cattcaatta gtaagcataa gaatacttag tgaagaggga tgcattgata ttgataacat      1260
     ttttgcgtta ctagataccg gaagccccgt gagttttgtt agcagaggag ttattccaca      1320
     agcagtaaag gacgaacacc tagtaaagag cagttttcgc ggcctaagcg gccaaaatat      1380
     tttgacattt ggaaaaatta agattgttct tttgtttcaa gaagaatatt acagtattga      1440
     agcttttgtt attcctaatt ttattttacc tacgcctata cttctaggca gagatgtact      1500
     aaaactctta tcacttaaat tagtcaaacg caaaaatgtt atgaaaacag atctgaataa      1560
     gttatcatta aataaaacca ttgcattatc taccgattta atttgtgcat ccctatttac      1620
     tagtacatat aagttagata acaacataat gacaagtaga gaaaattatt tacgtgtaaa      1680
     cgcacctgca actccggcaa agcctcagat ctttcaggaa tggatgcaag atttcgcgaa      1740
     tcgtagggta tcgaatgaag atgacgtagt taaagtaggc agtgagtttg gaggtgcctt      1800
     aatgcgagag tgtcgcgaaa tagtatataa acaatacatt gataggtttt ctaaaagtta      1860
     tggtgcgcca aaatgcaaaa tgtgcattcg tcttactgat tctacaccat tttattgtgc      1920
     ccctagaagg ttgtcatatc gtgagagaga aatagtttcc gaaaccgtca atgatctttt      1980
     aaccaataga atcatccgac ctagtaactc gccatatgcc tcagcgtggt tttagttagg      2040
     aaaaaagatg gaaagtgaga atgtgtgtcg attaccgtgg attgaataag aagaccgcta      2100
     gagataattt tccgttaccc cttattgaag actgtttaga ataccttgaa ggtaaatccg      2160
     tgttctccgt tattgacctt aagagtggct ttcaccacat aggtgttgaa gaagaatctg      2220
     taaaatatac cgccttcgtg actccggacg ggcagttgga atacttgagg atgccttttg      2280
     gacttaaaaa tggacccgct gttttccaaa gatttatttc cgacgccttg agagactttg      2340
     taagaaaccg acagatcgtt gtttatatgg atgatattat tttagcatcg tattccgtag      2400
     aagagcataa aaagatatta gctgggttgt tagatcgact cgtggagttt aaccttgaga      2460
     taaattttaa gaaaagtagt ttcctgcaga agcgaataga ttacctaggt tatgatgtta      2520
     gtgttcaagg aattctgcct aatgatacac acttaactgc tataaaacaa tatccggaac      2580
     caattaatag caagacgtta cgttcctgtc ttggtttatt ttcttatttt aggaagttcg      2640
     ttcccaattt ttcgcgtgta gcaaagcctt tgactgacct tcttaaaaaa gggggaccgt      2700
     ttcccatgtc ggattccgaa aaaagagcat tcctgcagct aaggacagca ttgtcgagtc      2760
     ctcccgtcct atcaatcttc aatccgcagt atgaaaccga attgcacacg gacgcaagtt      2820
     cccacgggtt tggtgctgtt ttgatgcagc gacagccgga taagaaacta caccctgttt      2880
     tcttctactc gagaaaggcc actgcagccg agtctcgcta tcacagtttt gaactcgaaa      2940
     ccttggcaat catatacgcc ttgcgccgtt tccgaatata cttagagcat aaaccctttt      3000
     taatagtaac cgactgtagt tccttggtac aaacattaag taaaaagtct ataaatcccc      3060
     gtattgcccg ttggtccctt gagttagaaa gtttcaatta ttcgatagcc cataggccag      3120
     ggtcaaacat ggcccatgta gatgcgctta gtaggcaaac agagatgctg agagaagtgg      3180
     aaggaatttc tgatccgtgt ccgattctgt caagagatgt tgcacctttt ggaccttgca      3240
     gccctattaa accttgtgct tcctttaagc cttgtggccc tactgcacct tgtgtagttt      3300
     ctgaccctgg aaaatcttgt gagccttgta aaattgatga accttgtaaa ccttgcgaac      3360
     ctagaggacc ttgtgaacct attgaaccgt gtgaaccttg taagccgtgt gaagctttta      3420
     gaccttgtcg atctactgat tcttgcgaac ctaggaaaca tgatgtacct tgtggtcctg      3480
     agaaacgtgt taaatccgtt aggtttgccc ctgaggttga agagattgtt ggaattgtag      3540
     gcgcataccc gtatgatatt gatttgcttt tgcagaccga acagataaga gatccggaaa      3600
     tccgtcgagt gcgagggaag ttagagatgg gtgaaattga gaatttcgtg ttgttagatg      3660
     ggatagtgca tagagcgaag gatagtgaca aactgtgtat gtatgttccg agccgaatgc      3720
     aagaagaact aattgaattc catgagaagt tgggccattt tgcgaccgat aagtgtgtga      3780
     ataaactgag agaaaaatat tggtttccgg tgtgaggagt aaggtcgatc tatttataaa      3840
     gaactgttta ccgtgcattc taccgcccga ggcccagcac cggtcccgtt cgatacaatc      3900
     catatcgacc acctaggtcc cctcccgtct attaactcaa agagaaagct cttgttggtg      3960
     atcattgatg cgttcacaaa attcgttaaa ttatatcccg tcaattccac cagtactaaa      4020
     gaagttaatt gctctttaga aacaatattt cgaatattat agccggcctc gcagaatcat      4080
     ctccgataga ggcacctgtt ttacttcttt tgagtttaaa gaattccttg agtgtagaaa      4140
     tattgatcat attaaagtag ccacggcggc tccgcaggca aatgggcaag tcgagcgtgt      4200
     gaaccgtgtt ctgacaccga tgttgggaaa gctatcagag cctttgaatc aggccgattg      4260
     gtataaattg cttaaccgtg ttgaattcgc tataaacaac tccgttcagt gtagtaccgg      4320
     aaagacccct agttccttgt tatttggttg tgaacaacgt gggccagtgg tggatgagct      4380
     caccgagtat ttggaagaaa aatttgatca ggagaaaccg cgatgtttgg atacagtaag      4440
     ggacgaagca cttgagaata tatgtcaatc acaggtccga aatgaaaccg catacggctt      4500
     aaggcataag gcacctacgt tgtacaaggt cgatgaattt tgttgctatt cgtaatgtgg      4560
     atgtgacttc aggggattgt aagaagtttg cacccaagta tcgtggccca tatagagtaa      4620
     accgtgtttt tccgaatgac cgttatgaga ttacagatat agacaattgt cagcttacgc      4680
     aactcscata taagggaatc cttgaggctg ctaggctaaa accgtggttg caggtgtgta      4740
     ataaaaccat aggaatgtgt atatgatcga ggtcgatcaa atgtcaggtt kcccgaa         4797
//
ID   Gypsy-14_DEu-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.06, Created)
DT   29-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DEu_;
KW   Gypsy-14_DEu-I; Gypsy-14_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-239
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 876-876 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 239 BP; 91 A; 37 C; 49 G; 62 T; 0 other;
     tgtaaacccc tcaattttca tattatgcgc cttggtgtga ccagctattg tggagctatc        60
     gataagagac cgatcgtaga cttaagttgg attttgtaaa actgaatgga cggtcacttt       120
     ggatcttaac agaagagcaa aaaagaaaaa caacgtgatt cggatcgaga agagaaaaat       180
     tgttagaaat aaaagccatc cgttgaaaat attatttaaa aagaactaag aagtccaca        239
//
ID   Gypsy-14_DFi-I repbase;    DNA;    INV; 5171 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DFi_;
KW   Gypsy-14_DFi-LTR; Gypsy-14_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5171
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 915-915 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4278-4757] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..1172
FT                 /product="Gypsy-14_DFi-I_2p"
FT                 /translation="MQKLEEKVSVIDKSLERKFEQKFEQMWATFERTMLGG
FT                 LQGVAKGPANTADTFAPAMPAGEPTLSASTPRLFAPPTDDAARRNCQVEPP
FT                 VAPTARSYDPQPSKANSAGFAADGVSTRAPQAVIPSRYWDFLELPDTEIPP
FT                 IFDGTRPWSEFQRLLDDMAEEYHWSERKKCRKLYTSLRGRAQRFHATLPES
FT                 TLRSYEAIKTAMREHFTVGTRTGYHIFHNRMQGPKETLDDFAMELERLGRA
FT                 VFGELPEPTYNNIMVQRFIDGIRETAYQVPIISSNPRSLMDALDMAVRIEA
FT                 QCRRRPGGTVMNISAITAETQLSTPRRGGRGARRNTRASPESSPHPATLAG
FT                 N"
FT   CDS           2720..4246
FT                 /product="Gypsy-14_DFi-I_1p"
FT                 /translation="MGRTNLAHRTIDTGQARPIKQPPRRVPLSRKSEVEQL
FT                 IADMQSRDVIRSSTSPWASPVVLVRKKGWIHQILRGLSPSERRHGERFVPV
FT                 EMDQESRPKTAFTCDVGLFEFNVMPFGLTNAPATFERLMDGLFSGLSWKST
FT                 LVYLDDIIVHSRTAEEHLVHLDQVFDRLATAGLKLSPRKCAFFRPEVNYLG
FT                 HIVSHNGLKACPEKIQKVVDWPPPRNQKEVRSFVGLCSYYRKFIPAFATIA
FT                 RPLHELTEARRPFTWSTEAQDAFGLLKVKLTTSPVLTFPDPDGLFILDTDA
FT                 SNHGAGAVLSQCQEGQERVLEYYSKTFNAAERNYCVTRRELLAAVLSTKHF
FT                 HHYLYGRKFVLRTDHASLRWLFNFKEPEGQLARWIERLQQYHMDIQHRSGK
FT                 HHGNADALSRRPCGECRVCEKAEQSDRPGVLFMQIEAVDYAQLQRQDPTLA
FT                 LVLSWLENGKRPLKSQIWGESPDIKAYWHSFENLHLEDGVIKTRIKTGEQA
FT                 ALVHQVQREEGTI"
XX
SQ   Sequence 5171 BP; 1252 A; 1560 C; 1298 G; 1051 T; 10 other;
     ttggtgccag gtgtggggtc acgtgggttt gcgaaaaccc agacccaaag aaaatgccta        60
     aaaagtccgt tcgccaacgc cagccctcac ccgatgggaa tatgggagag ggtgcacaac       120
     agcancagat tcagtctttc atgcaaaagc tggaagaaaa agtaagcgta attgacaagt       180
     ctctagaacg aaagttcgag caaaagtttg agcaaatgtg ggcgaccttc gagaggacca       240
     tgcttggtgg cttgcaaggt gtagcaaaag gaccggccaa caccgcagat acctttgcac       300
     cggccatgcc ggcgggggag ccaacgctct ccgccagcac gccgcgcctg tttgcacctc       360
     caacggacga cgcagcacgt cgcaattgcc aagtggagcc cccggtagca cctacggccc       420
     gctcttatga tccgcagcct tcgaaagcga acagcgccgg ctttgcagcc gatggagttt       480
     cgaccagagc accgcaagca gtcattcctt ctcgatactg ggacttttta gagttgccag       540
     acacggagat acccccaata ttcgacggca ccagaccatg gtccgagttt caacgcctgc       600
     tagacgacat ggcagaggag tatcactggt ctgagagaaa gaagtgccga aagctgtaca       660
     caagtctgcg cgggcgcgct caacgctttc acgctacact cccagagtct actcttcggt       720
     cctacgaggc tatcaaaacg gctatgcgcg agcatttcac cgtagggacg cgtacgggct       780
     atcacatttt tcataaccgt atgcagggcc caaaagagac actcgatgac ttcgcaatgg       840
     aactcgaacg ccttgggaga gcagttttcg gagagctgcc tgaaccgacc tacaacaaca       900
     taatggttca acgttttatc gatggcatcc gagagacggc ataccaggtg ccgatcataa       960
     gcagtaaccc gcggtcacta atggacgccc tcgatatggc cgttcgcata gaggcacaat      1020
     gccgtcgtcg cccgggcggt accgtaatga atatctccgc cataactgct gaaactcaac      1080
     tgtcaacgcc aaggagaggt ggccgaggcg cacgccgtaa tacgcgtgcc agtccagagt      1140
     catctcccca tcctgctact ctagcgggaa actaaatgcc gccagcctct cggggcggag      1200
     gttggcaacc aatgccgaca gccccaccaa accttttcct gccctggcgc gtaccaatgt      1260
     cgaagacgag tttcaccctt ggacgccaaa ggaacgtagc ccacctgtag cctcaatttg      1320
     gacgagtgaa cacgagccca cggcccgtgg cctcttgccg cacctcaccg cgagaccgcc      1380
     gcttaccgag cagcttatgg cccgacagag acttcctcct acgagagtcg aagccgtcct      1440
     gcccccagcg cccgtaatgc cgccgcccgg agagagtgcc aacggatcac ggcctaccct      1500
     ggcctacgct acttcgccgc cacccaaagt attggcaact ggagactacg aacgagaagg      1560
     tcccccggta aagctaacaa ccaccgaaca gttcactgcc gcaccagccg ctccttcaga      1620
     ggaagtcgac gccgcccgcg ccctgctgtt cgaggagccg ccgctcagcg aatacgcttc      1680
     gacgccgccg cttaagtgtg ttgaagcgaa accgctgccg gaagatggag ttgtcgcccc      1740
     cgcgacccac gnactcgccc ggcccccaaa atctcaacaa accgccgaac gtttcacagc      1800
     ccttgaagaa cctgagtccg ttttggcccg tttgtttgct gacccgacat ccgaggaagt      1860
     tgaccctgcg ccaccggcct atatccaaca ggagctcaac gcctcgccca ctaaagctac      1920
     gtatacctgc agttcacgta gcggtcagca tttacactgt tttatcttct tacagaagac      1980
     cccggtacga ctgatcgtag acactggcgc ctccgtctcc ctcctcaacc gtggagactt      2040
     tcagggacgg ttaaccacca ccccgtgcca cgttgttcta caaggtccgt ctgcagaaca      2100
     gttcatcgcc acagcccggg tgttagccag tctggttata gctggccgac ccctacaaca      2160
     cgaattcctc ttggtggagg gcaacacccc gagccttatg ggcatcgatt ttctgtcgcg      2220
     tcaacaggca tccgtggatc taaaagcgct acacctcaaa tttccgtggg gtgcgatccc      2280
     tctacgcccc ccaggtgnga cgctgccnag cctactgtac tccacagtcg ccaccagaat      2340
     tccgccttac agcaacacct ttctgaaagt cagctgccta tcacgggatc gatgtcccgt      2400
     ggcagtcttg gagcgtggtg ccttctccca gttgcctact gaggtaatct tgggcagtac      2460
     ggtggtgaat antacggaga actctacaat tctgcacttg ctgaactcga gttccaggga      2520
     atgccgatta ccaatcttca ccattttggg ccaagtggaa ccagccgaag tactgccggt      2580
     cgctccgaag tcgctgaagc ccgacagtac gaattggacg tcgctggcac taccgccaga      2640
     cttaccgaca aaccttcacg tggactggca gaaattactc caacgctacg agacagtgtt      2700
     tgcccaacgg gacgatgata tggggcgaac taaccttgcc catcgcacca tcgacaccgg      2760
     ccaggcccgg cctattaagc aaccaccacg tcgggtncca ctttcccgga aatcggaggt      2820
     ggaacagtta atcgctgata tgcagtcaag agacgtgatc cgttcctcca ccagcccatg      2880
     ggcatcgccc gtagtcctag tncgaaaaaa aggatggatc caccagattc tgcgtggatt      2940
     atcgccgtct gaacgacgtc acggtgaaag attcgtaccc gtagaaatgg accaggaatc      3000
     acgccccaaa actgcattca cttgtgacgt ggggttgttc gaattcaatg ttatgccatt      3060
     cggtctgaca aacgcgcccg caaccttcga acgcttgatg gatggcctat tttccggtct      3120
     ctcttggaag tcgacactgg tgtacttaga cgacataatc gtgcactccc gcacagccga      3180
     ggagcacctg gttcatttag accaagtatt cgaccgattg gcaaccgccg gcctcaagtt      3240
     gagtccacgt aaatgtgctt tcttccgccc cgaagtgaac tacctcggtc acattgtgag      3300
     ccacaacgga ttaaaggcat gccccgagaa aattcaaaaa gtagtcgatt ggccaccgcc      3360
     ccgcaaccag aaagaggtac gatcattcgt gggattgtgc tcgtactacc gcaagttcat      3420
     cccagctttt gcgacaatag cccggccgct gcatgagtta accgaggccc gccgcccctt      3480
     cacgtggtcc accgaggctc aggatgcatt tggcctgctt aaggtaaagc tgacaacgtc      3540
     gcccgtactc actttcccag atcccgatgg cctgttcatt ctcgacactg acgcatccaa      3600
     tcacggcgct ggagctgtac tcagccaatg tcaggaaggt caggagcgtg ttttggaata      3660
     ctacagcaaa acatttaacg cagcagagcg caactattgc gtcaccagaa gagaattgtt      3720
     agccgccgtt ctctccacca aacatttcca tcattatctg tacggacgaa agtttgtctt      3780
     gcggacggac catgcatcgc tccgctggct gttcaacttt aaggaaccgg aaggccaact      3840
     agctcgctgg atcgagcgtc tacagcagta ccatatggac attcaacacc gaagtggtaa      3900
     acatcatgga aacgctgacg ctctttcacg ccgaccctgt ggtgaatgca gggtgtgcga      3960
     aaaagctgag cagtccgaca gaccaggagt ccttttcatg caaatcgaag ctgtcgatta      4020
     tgcccaactt caacgacagg acccaacttt agcgttggtc ctatcatggt tggaaaatgg      4080
     aaaacgaccc ctcaaatccc agatttgggg cgaaagcccc gacatcaaag cttactggca      4140
     ttcattcgaa aaccttcact tggaagacgg cgttataaaa acccggatca agactggtga      4200
     gcaagcggcc ctagtacatc aagtgcaacg cgaggaaggg accatctaga cgaacggtgg      4260
     gccagctgna accaagctcc attggcgccc ccttcgaacg nctagccatc gacattctgg      4320
     ggcctttgcc taccacctcg cttggcaaca ggtacattgc cgtggtgatg tgttatttta      4380
     ctaaatggcc cgaatgcatc gcccttcctg atcagacggc tgaaaccgta gccaaggccc      4440
     ttgtgcaaga agttttctgc cgttatggag tgccatttgt actacactcg gatcagggcc      4500
     gcaattttga gtccgcggta tttcaatcct gcatgcgcct tcttgatgtg gaaaagaccc      4560
     gaacgacccc gcttcaccct caatccgacg gcatggtcga ggggttcaac cgaaccttgc      4620
     tggactatct agctaaattc gttgcagccg atcagcggga ttgggaccaa ctcctaccgc      4680
     tagccctgtg ggcttatcgc tcagctccgc atgaagccac tggattctca ccaggactat      4740
     taatgttggg gcgtgagcta cgcctaccgg ccgaactgat atacgggcac ccgtccccta      4800
     gtccccaaag ctaccccgaa tacgtggagc ggctncagga gaaccttcgg aagacacacc      4860
     acgccgcccg aacacagctt ctagccgcgg ccaaggtaaa caaaacccgc tacgatctcc      4920
     gatcacatcc ggtcgaattt gaagctggtg aggacgtttg gctctacgcc cccactcgaa      4980
     aagtcgggcg gtgcccgaaa ctacagtccg actggattgg ccccgctact gtgatacgac      5040
     gacattccga tctggtttac gaggtccgtc tacccggcga gcgttctacc aagaccgtcc      5100
     acgtcaaccg cctggtcaag tatcatcgat cgaacactcg gccaggagac tcgagtctaa      5160
     gaggggggta a                                                           5171
//
ID   Gypsy-14_DFi-LTR repbase;    DNA;    INV; 366 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DFi_;
KW   Gypsy-14_DFi-I; Gypsy-14_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-366
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 916-916 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 366 BP; 99 A; 88 C; 83 G; 94 T; 2 other;
     tgtaacgaaa gttggtttca aatgacttga ccaggtgacc agtaccaaag ctgacgtctg        60
     gcaaccctag gacaggccaa cgaccggtca ctctaggacc tgtaaaaagc ctgtcaaaaa       120
     gtttaggaaa gtngcgatca cactgatcga tcttctctct ctctctcttc ttccggttgt       180
     ctgccaggct gcangcttgt gtaattaagc gggtaataaa aacctaatat aaatcttaag       240
     aactcttgct cggttgtttg aatggcgttg gcataacgtg ggctgacccc cacctattaa       300
     acagtatccg ctcggctgac agtggcgaac ttggaaacct cgacagggca actaagtttc       360
     gttaca                                                                  366
//
ID   Gypsy-14_DMel-I repbase;    DNA;    INV; 4482 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, a sample
DE   sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4482
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1047-1047 (2019).
XX
DR   [1] (Consensus)
XX
CC   A single copy in the genome. The corresponding LTR region is
CC   INVADER4_LTR, and INVADER4_I is the truncated vertion of
CC   Gypsy-14_DMel-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1121
FT                 /product="Gypsy-14_DMel-I_1p"
FT                 /translation="MAALEAQNRNLMEIIRTMHAPRASASNEKSLHVALPK
FT                 FCADGAGADPSAWCTTVDLILADNALVGSALVIALSKSLEGSASQWLSQIC
FT                 FAGITWPQFKELFIQRFVGMETSAAILMNGRPTPGESFAQYGSRIVTLLLS
FT                 KWKAKDLEEIAVSVALAHIAQIDNKLLRWVFTTNVATRNELQQQLQAYAFK
FT                 KLNNDDDSGPERKKSRMQSQIKCHFCEKVGHKFAEYRARKEGTSNTKGRNY
FT                 SGSNTPGLKDRSNIKCFKCNEMGHVASVCPKGNNKYIEKRVDVCKLSEPSG
FT                 LFFQLGEPFPFFFDSGAECSLIKDKLSNKLAGKRINNLVVLRGIDDNVVKS
FT                 HLQILSTVQMSEFNL"
FT   CDS           join(1151..2386,2347..2892,2853..3050,3054..4067)
FT                 /product="Gypsy-14_DMel-I_2p"
FT                 /translation="LFEARHNGQDILKLGFGVLIESDKFSIYKSNVINVSQ
FT                 NNAPENSLETLFDANTELDDNNKCRLRDILEKYVDNFVIGIPNKRVITGAL
FT                 EIRLIDKNKTVQRRPYRLSAEEKLLVRVKIEQMLEANVIRPSSSPFWSPML
FT                 LVKKKDGSDRLCIDFRELNLNTISDKFPLPLISDQIDRLRGGKYFSILDMA
FT                 SGFYQIPIHPDSIEKTAFVTIKGQYEFLAMPFGLKNASAVFQRAIVRALGD
FT                 LAYSYAVVYIDDVLVIANTKEEAYERLNTVLKALSEAGFSFNIKKCNFLCT
FT                 GIEYLGFYIKDGEIKPNPRKIEALSVLSQPTSATQLRQFIGLASYFRQFVP
FT                 RFSEKMKPLYQLTSKLNTFAWKEEHERIRQNIIKVLTCDPVLTIFDPELPI
FT                 ELHTDASAVVTVPCSCIKCQCSGYGAMLMHKIEGKRRVVEYYSKCTSISEA
FT                 KYHSYELETLAVYNAVRHFRHYLHGRKFVVYTDCNSLKASLTKAELTPRVH
FT                 RWWAYLQAFDFNVEYRKGNQMAHVDFLSRNPIPPVSNAISKVDEVRVDLAT
FT                 ITDNWLLAEQQRDEGINKILAQLNNEDIEANIDKTKYSVMARPIAYQNKIQ
FT                 RNGKTHCLPVIPKAFRWSVINHVHEAVMHLGWQKTLDKVYENYWFEHMTKY
FT                 VRRFVENCMTCLSKPPSGKIQVEMHPIPKIDIPWHTVHVDISWKLSGKNDL
FT                 KEYIIVQIDAFTKFVHLYHSLNLDSENCIKAIKSSISFFGVPSRIIADQGR
FT                 SFASNKFREFCSTNKIELHLIATGASRANGQVERVMSTLKTMLTAVEMSQR
FT                 SWQDALAEVQLTMNCTTNRVTKASALELLIGREDRPFGLLPVDGEESVVDR
FT                 EQMRVQAKENMQRNAQYDKQRFDKNKARVVRYMVGDHVLLKSEERHQTKLD
FT                 PKFKGPFQVLHVLDGDRYELKSLVNKRTYKYSHEWLRALPDRQLTGECNDD
FT                 SQEGEELKDGTSDSASVSQEGKNLANSTSICKKKKKKKEMTAL"
XX
SQ   Sequence 4482 BP; 1483 A; 777 C; 1049 G; 1173 T; 0 other;
     cagaagtggg atcgccttcg ccacaagaga ccagatctga tcagtatatg gctgcgttgg        60
     aggcacaaaa ccgtaacctc atggaaataa taagaaccat gcacgcaccg agagcatcgg       120
     cgtcaaatga aaagtccttg cacgtcgcac tgccaaaatt ctgcgctgac ggcgctggag       180
     cagatccatc tgcatggtgc accaccgtgg atttaatcct tgcagataat gcgcttgtag       240
     gcagtgcact cgtaatagcg ttaagcaaat cattagaagg cagtgcatca caatggctgt       300
     cgcagatatg cttcgctggc atcacgtggc cgcagtttaa agaactgttc atacagcgat       360
     tcgtaggaat ggagacgtct gctgctattt tgatgaacgg acgtccaaca cctggagaga       420
     gctttgccca gtatggaagt cgcattgtca ccttattgct atccaagtgg aaggccaagg       480
     atttggagga gattgcggtt tctgtagcgt tggctcacat agcacaaatc gataataagt       540
     tgttgcgttg ggtgtttacg actaatgtgg ctacgcgcaa tgagcttcag caacaactgc       600
     aagcttacgc cttcaagaaa cttaacaacg atgatgattc tggcccagaa agaaagaagt       660
     caagaatgca gtcgcaaatc aagtgccact tttgtgagaa agttggccac aaattcgccg       720
     aataccgtgc tcgaaaggaa ggtacatcaa acacaaaagg aagaaactac agcggaagca       780
     atacacctgg gttaaaagat cgttcaaaca taaagtgttt taaatgcaac gaaatgggac       840
     atgtggcgtc tgtttgtccc aaaggcaaca acaagtacat cgaaaagcga gttgacgtgt       900
     gcaaattgag tgagccaagt ggactgttct ttcaattggg tgagcccttt ccattctttt       960
     tcgattcggg cgccgaatgt tctttgataa aagataaatt aagtaacaaa ttggctggca      1020
     agagaattaa taacctagtt gttttaagag gaattgatga caatgtagtt aagagccact      1080
     tgcaaatact atcaacagtc caaatgtctg aatttaattt ataaattttg tttcatgttg      1140
     tagtggataa ctatttgaag cacgacataa tggccaagac atattaaagc ttggtttcgg      1200
     cgtattgatt gaatctgata aatttagtat ttacaaatca aatgttatca atgtctctca      1260
     aaataatgca cctgagaaca gtttggaaac actttttgac gccaatacag aattagatga      1320
     taataataaa tgtagattaa gagatatatt ggaaaagtat gtcgataatt tcgtaattgg      1380
     gataccaaat aagcgtgtaa ttacaggtgc attagaaatt cgtttaattg ataagaataa      1440
     aactgttcaa aggcgcccat atcgacttag cgcagaagaa aaactcttag ttagagtaaa      1500
     gatagaacaa atgcttgaag ctaacgtaat tcgtcccagt agttctccat tttggagtcc      1560
     aatgctatta gtcaaaaaga aggacggtag tgacaggttg tgtatagatt ttcgtgagct      1620
     aaacctaaat acgatttcgg ataagtttcc attaccgctg atttccgatc aaatagatcg      1680
     cttacggggt ggcaaatatt tttccatctt agacatggcc agcggatttt atcaaatacc      1740
     gattcatcca gattctatag aaaaaacagc atttgtgact atcaagggtc agtacgaatt      1800
     tctggccatg ccatttggtc taaagaatgc atcggctgtt tttcaacggg ctattgttcg      1860
     agccttgggg gacttagcct attcctatgc agttgtttac atagacgatg tgctggtaat      1920
     tgcgaataca aaagaggagg catatgagag gttgaataca gtgctaaaag cgttatcaga      1980
     ggcagggttc tcgtttaata taaaaaaatg taattttctt tgtacaggaa tagagtacct      2040
     aggattctac atcaaggatg gagaaattaa accaaatcct cgtaagatag aagctctttc      2100
     tgttttatct cagccaacct cggcaacgca gttaaggcag tttataggtc tggcatcata      2160
     cttcagacaa tttgttccac gattctcaga gaagatgaag ccactgtatc agttaacctc      2220
     taagctaaat acttttgctt ggaaggagga acacgagagg atacggcaga atattatcaa      2280
     agtgcttaca tgcgatcctg tattgaccat attcgaccct gagcttccaa tcgaattgca      2340
     tactgatgcc agtgcagtgg ttacggtgcc atgctcatgc ataaaataga agggaaacgc      2400
     agagtagtcg aatattatag caaatgcacg tcgatatcag aagccaaata tcactcgtat      2460
     gaattagaga cgctagctgt ctataatgca gtaagacatt ttagacatta cttgcacggt      2520
     agaaaatttg ttgtgtatac tgattgcaat tcgttgaaag ctagtcttac aaaggccgag      2580
     ttgaccccaa gagtacaccg ctggtgggcg tacttacagg catttgactt taatgtagaa      2640
     tatcgtaagg gtaaccaaat ggcccacgtg gattttttgt cacgaaatcc gattccccca      2700
     gtttcaaacg ccataagcaa agtagacgaa gttcgtgttg atctggcgac aataacagat      2760
     aactggctat tggccgaaca gcaacgagat gagggcataa acaaaatcct ggctcaattg      2820
     aataacgaag acatagaggc aaacatcgat aaaacaaaat acagcgtaat ggcaagaccc      2880
     attgcctacc agtaatccct aaagccttta ggtggtctgt tataaaccat gtacacgaag      2940
     ctgtaatgca tttgggctgg cagaaaactt tagacaaggt ctacgagaat tactggtttg      3000
     agcatatgac caaatatgta agaagatttg tggaaaactg catgacatgc tagttgtcta      3060
     agcctccatc aggcaaaata caagttgaga tgcacccaat tcccaagatt gacataccgt      3120
     ggcataccgt tcacgtggat ataagttgga aactcagtgg aaagaacgat ctaaaggaat      3180
     acatcatagt tcagatagat gcgtttacta agtttgttca cttgtatcat tctctaaatc      3240
     ttgactcgga aaattgtatt aaagctataa agtcaagtat atctttcttt ggagttccca      3300
     gtcgtattat agcggatcaa ggcagaagtt ttgcaagcaa caagttccgg gagttttgtt      3360
     caacaaacaa gattgagttg cacttaatag ctacaggtgc cagcagagca aatgggcagg      3420
     ttgaaagggt gatgagcact ctcaagacta tgctaactgc tgtggaaatg agtcagcgat      3480
     catggcagga tgcgttggca gaggtccaac tgaccatgaa ttgcacgaca aatcgagtca      3540
     ctaaagcaag tgctttggaa ttgcttatag gaagagaaga taggcctttt gggttgttac      3600
     cagtcgatgg ggaagaaagt gtagttgata gagaacaaat gagggtacag gccaaagaaa      3660
     acatgcaaag gaatgcacag tacgataaac aaaggtttga taaaaacaaa gcaagagtag      3720
     ttcgatatat ggtaggtgat catgtgttac tgaaaagcga agagcgtcat caaacgaagc      3780
     tagacccgaa atttaagggc ccatttcaag tacttcatgt actagatggc gatagatacg      3840
     aattgaagtc gttagttaat aagcgaacat ataaatattc gcatgaatgg ctaagagcgc      3900
     tgccagacag acaattgaca ggagaatgta atgatgactc tcaagaggga gaagagttaa      3960
     aagatggcac tagtgatagt gcatctgtgt cccaagaagg gaaaaatttg gcaaatagca      4020
     cgagcatttg taaaaaaaaa aaaaaaaaaa aagagatgac tgcactataa cagctaactc      4080
     gcagggacga gaagtgttat ggcgggggtc aagagatgat gactgcacta taacagctaa      4140
     ctcgcaggga cgagaagtgt tatggcgggg gtcaagagat tgggtgtgag agaagacacg      4200
     ccaatgttat tatgagaaat taaagtcatg aaaaatgtaa atggtttgaa gttgtgatat      4260
     gtaaactgga gatgtctttg taattaagtc tgtaaatgaa gaataaataa tgagatgaag      4320
     tgtcaattaa attggtgtaa gcggctctat aagttaataa atgtaacaga gaaagatatt      4380
     tgagttggtt aaataaattg ttattaagtt gacggagttg tgtggcttgg tcttgattgg      4440
     tggattaggc acacgaggac gtgtgaaagg tcaggaaggc cg                         4482
//
ID   Gypsy-14_DMo-I repbase;    DNA;    INV; 6548 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6548
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6548 BP; 2013 A; 1494 C; 1450 G; 1591 T; 0 other;
     ggcgcccaac tagtggtcgg actcaccaac caacagcaat taagacagca gcgcgggagc        60
     tgcgagtgac cagcacagga gctgcaacaa ccaacagcaa ttaagacagc agcgcgggag       120
     ctgcgagtga ccaagcttat aaataaattt ttttttgtgt tagttgaatc atgtaagtgg       180
     atactctagc caaaattttt tcttcaaaca caaaagtctt aattttttat aaaaattggt       240
     taatacttgt gagtatttta ttttgcaaca aatcataatt aataacaata atctgaacca       300
     ggtttctgaa acacgtgaga gtgactacct tgaggattct ataatagtta aaacaattta       360
     tcatccagat cgttagtaaa attaccttgt gttactttct gtgtgtctaa aattgtgctg       420
     tatcaatgca tacagttctc atgattcagg gctacgtcgt aattcgatcc atcttttgac       480
     gccccgtttt gcttttcgcg gccacttgcc tgcgcatgtt tcagttcagc caatatagaa       540
     cacctcgcaa gcagcttagc gactcagatt ccgactgtga cattcccatc cgagcctcgg       600
     ctacaagacc tctccctgca gtttcccccc cattaggtaa aatggatcca gatcagctta       660
     gggaaataat aaggtcggct gtcagcaatg ctttagctga acaggccact gcaaacgagt       720
     agagggagcg agcattgact caaagaatta atgagttggc tcaacaaata gcagcagcaa       780
     acgttgccgc cccacaagta gtagcatatg ctgctatagg aattagaaac gacattcgct       840
     gtgacgagcc actagatgcc gtcaaatgtt tacctgagtt tgcaggagta caggaagctt       900
     atgtatcttg gaggcaggca gcattagcag cttacgagat cttcagacca cataatggca       960
     gttctcgtca ctaccaggct gttatcatta taagaagtaa gatcaggggc cccgcagacg      1020
     cggtgctggc ctcatttggt actgtattga attttgatgc gataataaat cgcctagatt      1080
     tcacatacag tgacaagaga ccaattcatg tcattgaaca ggaattaggc accttgaggc      1140
     aaggtggcct atccctgctc cagtattatg acgaagtaga gaagaaactc actcttctca      1200
     ctaacaaagt taacatgtca tatgagccgg ctttagcaaa gggcctatgt gaaaaattcc      1260
     gtgacgatgc gttgcgtgtg ttcatatcgg gtctcaagcg cagtcttaca gatgtgctct      1320
     ttgcagcaaa gcccagagac ttgccttcag cgctagctct cgcgcaagag gttgagtcaa      1380
     atcatgaaag gtacacattc gcggctaatt tcgcaagaag tctagaggac aaagagcgca      1440
     ggccgcatgc aaaagcgcag ggtcaccaac aggaaaggca ttcgcaacaa gccgaaatac      1500
     aaactagcgg taccaagaat ccacacttca gcaagcaaag caaggccaca gtgcagactg      1560
     accaacgaag cagcaggcag cacaatagta atggcgcacc ggtgcccatg gaggtcgatc      1620
     cttccttctc aagggtattg cagcccactc aggcccccgc tcacgcgaat aggaagaacg      1680
     ccgcatccaa ccgcacaggt ggtcagagag atcaacaaag attgaatcac gtcacgcaag      1740
     acgcgggaca gggagcagag gtgtacgctg atgccgcctc tagcgcagcg gcacaaatca      1800
     atgacgatgc tagttatgac tctgatgctc tcaatttttt aggagtaaat ccctgctacc      1860
     cgtcatcaga cgaagaatag cagggattcc tcatagacac gggcgcggcc aagaatttca      1920
     ttcggccaca tgaagggtta aaaggcgtcc actctgtaga gtcccccttc aaaattcatt      1980
     ccattcacgg cgagacacaa attacacaca aatgcttcgt tgcaatgttt gggttaaagg      2040
     caactttttt tattctgccg gacttgtcaa cttttgatgg gattataggc cttgacctgc      2100
     taaggcaggc agctgcttcg ctttgtctag cttcaggaca gcttaaatgg ggcacggagg      2160
     tcgaacaaat caccttccac acgtgcaaaa acgtaaattt cacaaatgta gactgtgcag      2220
     aggcatcccc attagccaga agttcctttt tgaaaatgct aaagaccaga caaaaggcct      2280
     ttgcagaccc agacgaggcg ttgccgtata acacatcagt cgtggctacc attaggacca      2340
     tagatgagca accgatctat gccaggcttt acccgtatcc aatgggagca gctgatttcg      2400
     ttaataaaga aatcaaagat ctgctaaaaa atgatataat tcaaaagtca gtctctccct      2460
     acaataatcc aatatgggta gtagacaaga agggcactga tgaagcgggc aataggaaaa      2520
     tgaggttggt aatggacttt cgtaaactta acgaaagaac cgtgcctgac aaatacccta      2580
     tgccaaatat atcaatgata ttggggaatt tgggaagagc caaatttttt tcaacattag      2640
     acctcaagtc cggttatcac cagatcatac tcgctgaacg cgaccgcgaa aaaacctctt      2700
     tctctgtaaa cggggggaaa tacgagttca aaaggctccc ctttggatta aagaatgcag      2760
     caagcatctt ccaaagaacc atcgacgaca tactgcgaga gcagattggc aaattttgct      2820
     atgtttatgt cgatgacgta atcatctttt cagaagatga ggactcccac gttaaacacg      2880
     tggattgggt cctaaaaagc ttacacgaag caaacatgag ggtctccatc gaaaagtcgc      2940
     gattttttaa gaaaagcgtg aactttcttg gtttcatagt caccagcact ggcaccacga      3000
     cggaccctga aaaggttaag gcaatacagg agtatccaga acctaaaaca ctattcgagg      3060
     tcaggtcatt tctaggcctc gcaagttatt acagatgttt cattagggac ttcgccgcaa      3120
     tagcaagacc catctccaat attttgaagg gtgaaaatgg aacagtcagt aagcataggt      3180
     ccagaaatat aaaggttcaa ttctctgaag tgcagcaaag ggcgtttcag aagttgcgcg      3240
     acattttgtc atctgaggat gtaatgctca ggtaccccga ttttaagaag ccattcgatc      3300
     taacgaccga tgcttcggct tacggcatag gtgcagtctt gtctcaagag ggtcgtccta      3360
     taacaatgat ttcaagaaca ttgaaggaca gcgaggtaaa ctatgcgaca aatgagagag      3420
     agttattggc catcgtatgg tcacttgcca agttaaggca ttatttgtat ggagtgaaag      3480
     acattaacgt cttcactgat catcaaccct tgaccttcgc agtttcggaa tccaatccaa      3540
     atgcgaagat caaaaggtgg aaagcgcgca ttgacgagtc taatgcacgt atcttctata      3600
     aacccggcaa ggacaatctg gttgcggatg ccttgtcaag acagcagctc aacgctgtga      3660
     atgaacaaga aattgagtcc tgcgcagcaa cgatccacag tgaggtatct ctcaccaaca      3720
     ccattgagac aacagacaaa cccttgaatt gttttcaaaa ccaaatagtg ctagaagagg      3780
     cgcgtttacc cttaaaacga agttttattc tttttggaaa taagaaacga tacttgatca      3840
     gctatacttc catcgaatcg ctgctagacg agctcgatga tgtaatttca cccaaatgcg      3900
     taaatgctct ccactgtaat ttacacacgc ttgcaatgat acaagattca ttggttcgta      3960
     gatacccggc cacaaagttc tggcattgca aaaatcgcgt agtggatgta attgcggtgg      4020
     gagatagaag ggaaatcctc acagccgagc ataatagggc ccataggtct gcacaggaaa      4080
     atattaagca ggtactctcg gagtactact ttccaaagat ggcaagaatg gccaatgaaa      4140
     tagtacaaaa ttgcagaaca tgtgctaggg ctaaatatga tagacacccc aacaagagct      4200
     tggagagaca ccgatcccct cacatgtagg agagatgtta cacatagaca ttttctccac      4260
     tgacaggaaa tactttctaa cttgcatcga caagttctct aagtttgcta ttgtccaacc      4320
     gatcccctca agaaccattg tggatctgaa gccagctcta atgcaaatca tgaatttttt      4380
     tcctaaaacc agatacattt actgtgacaa tgaaccgtca ttgaattcag agaccatagt      4440
     gactatgctc gcaaacaact atggggtcag catttcaaat gcaccaccat tgcatagcat      4500
     ctcgaatgga caggttgagc gctttcacag cactctgtta gagctggcca gatgcctaaa      4560
     gatcgataaa ggcataaatg acactgtaga agtcatttta ctggctacaa ctgagtacaa      4620
     taagtcgatc cattcggtca ccgaccagaa accagttgat gtggttcagg cgcacccaga      4680
     tgagccacaa ggagaaatac aagaaaagat cagaaacgct cagacgatgc tcagagctag      4740
     ggagaacgca aatcggcaga atagggtctt cgaggttggt gacaaagttt tggttaagtc      4800
     caaccgacgg ctcggaaaca aactcacacc tttatgtgat gagaaggcag tggaagcaga      4860
     cctggggacc gaggtcctca ttagagggag agtggtccat aaggacaacc taaggtgaat      4920
     cccttggttt tttttgtaca cctgttttta agccactagg caaactcgta taagttagat      4980
     atagttgttc aacttacttt tagccacttg gcataatttt tataaacttt cttggtggtg      5040
     gacattaaaa agaaaaacaa aaaaaattgc gaaaaaaata agaaagcagc ctcacttcac      5100
     aggtttggat ccatattact cttctccttg tccctggctt cggcacatgt catcgactac      5160
     tcgcgtgcca agtacattcc catcgtcgac ggcgaaatct tggtatggga gaaatacgcc      5220
     tatgccaggc actcggcaaa cctctccgag tacgcgcgaa tagtggaaga aacagtcaaa      5280
     ttaattgaca tgttcccgct atcccacatg aaaaaacttc taactgtgga cacggcacat      5340
     ctacaagacc tattggaggc gttaggcacg caccatagag tcgcctggag cttagatttc      5400
     ctagggtcca tactaaaggt tgtggcgggt acacccgatg ccgacgattt agagcagact      5460
     aggtttactg aaatgcaatt gataaatgcc aataatagac aaataggaat aaacactaga      5520
     gttcaggacc agcttaacca gttaacaatc actgtcaaca caattctcaa gacagtcaaa      5580
     aactcacaag ttgacactgg ccatttatat gaaacactac tgtctagaaa caggatgcta      5640
     atgatggagt tgcaaaattt aatgcttgct attactctgg caaaggctaa cattgttagc      5700
     ccaaacattt tggaccactc agatttgaaa tcaatttggc tagaggaacc caccaacact      5760
     cccataggag atcttatgtc cgttgcgtcc gtaaaagttc ttcaatccat taacaccata      5820
     cactgtataa ttaaattccc caagattaaa aaagcttgca ggaagatcac gatctatcct      5880
     gtcatccaca agaacttcat agtacgattg tttgacaacg tcatagccga atgcgatgga      5940
     gaaacccaca cactgcagag ttgcgccgct tcacctggag ccacattttg tcgtctggct      6000
     ttggaaagtt catgtgccaa agagctccac gcaggtgtca cagcacactg cgagatccag      6060
     ccgagcaacc tggaaataat cacccatgta gatgacggaa tcatcatcct caacgacggg      6120
     tccgcaagga ttcaggtgga caacggcact gagatccagg tacaaggcac gcatctcatc      6180
     acgttcggag accgggtcgc aattaacggg actctgtttt acaatcacaa caacgtgcgc      6240
     aatagagtcc caggtattgc caattctccc atgctgaaca tcactgccac ccaagatgtc      6300
     ctcagcctcc cttaccttca tcgtttgagt gaacgtaatc tggaggtgat acagcaattc      6360
     gagaaaaacg ccggaactga tcaggcttat cgtgtggcat tcattattgg agccatatgc      6420
     tgtgctttaa tctgcattgg tctcactctt agtcgattca tcagtgcaaa gaagtccgca      6480
     aagcagttat gagaagtcgt cgccgggatt gggtcggccg aggacggcct catacttgaa      6540
     gggggagt                                                               6548
//
ID   Gypsy-14_DMo-LTR repbase;    DNA;    INV; 450 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-450
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 450 BP; 122 A; 98 C; 93 G; 137 T; 0 other;
     agttaacaat taacacttaa tgtgggatat ctcataagtt tacagccaac cctcgctatc        60
     acgtgctgta caagttaagt aacagccctc gcaattgcga cgttacataa gttgtatcag       120
     cgcgctatag ctgcaatggt cagcggcggt aaccggacac ttttgttttg caagagtttc       180
     cgttatcgcc aaagatttgc cgagtcggct tgccgaccat gacattgtgg cgtgatgcga       240
     gttttggctt agcttaagcg aaatattctg tattttaggt tttagttttg aatacagcgc       300
     tcttccagta agtcgcttaa ataaatattc actccggcac ttagccgtta aataatttgt       360
     tttattgtct gagcccgagg ccagcaataa gaggtacagt tcgcctctca acctaatctt       420
     cacccacaac tggaataaag gattataatt                                        450
//
ID   Gypsy-14_DRh-I repbase;    DNA;    INV; 5487 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DRh_;
KW   Gypsy-14_DRh-LTR; Gypsy-14_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5487
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1577-1577 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1822..3243
FT                 /product="Gypsy-14_DRh-I_1p"
FT                 /translation="MLSGPKPGKRTESSPIRGTSEDHTPRTPELTPPLRFE
FT                 GGRIVATVSIEGKTFHATLDTGASRSFISAKIADDIGSTNNRRDVRTRIAL
FT                 ADGSTTDVTHALTTTVTLGRDTAKTTLLVLPSILDEIILGIDFLCGIKTTI
FT                 QCGKAQLSLSYYTPPLTSRSKPPIVTPRVAAISPSAVGPTPSPRCTVPPVA
FT                 APRRSASRIQVNAPTVTPRRSPALLQVETPTVTPRPRPTPSPVNNSFYLKP
FT                 LADAAAARKSNPFRKSPTTTHPPGQTQEVTASLATVITEGPEESRIQAFLE
FT                 AELAPFEHMTGTSHIAEHRIVMKDDKPIKQRYFPKNPAMQKIIDEQVDELL
FT                 RDGRIEPSRSPHSAPIVLVGKKTGDVRMCVDYRQLNAHSVPDAYPLPRIGH
FT                 ILERLRNAKFHLDAGSKKRLLADPGGPRQPRLYRIYRAGPRALPVESNAIR
FT                 LALGSCYISAGTGQRDRTRHGASRIRLSR"
FT   CDS           3521..5704
FT                 /product="Gypsy-14_DRh-I_3p"
FT                 /translation="MPFGLHSAPATFQRALDSVIGPDMEPHAFAYLDDIIV
FT                 IGTSLDEHFTNLREVLRRLRQANLKLNKAKCKFFQRSITYLGHVISEDGIH
FT                 TDPDKIAAVRELQPPTNCKELRRCLGIASWYRRFVENFATIVQPMSALLRK
FT                 GRKWTWSDPQQQAFEELKRKLTEAPVLACPDFNLKFQLQTDASDFGLGAVL
FT                 TQQVDGTERVIAYASRRLLAAEENYSATEKECLAIVWAIRKMRCYLEGYRF
FT                 DVITDHLALKWLNSIDNPTGRIARWALELQQFQFDVSYRRGKQNVVADALS
FT                 RQPLETLQQVNETNEPCKWITAKIKQIEANPEKFPDYIQENGQLYRHLDNA
FT                 FRKEDHGAWRLCVPSSHQRRVLEECHDHPTAGHLGIRKTTTRVCQQYYWPG
FT                 LFRDIARYVRQCPACQQFKVSQRKQAGKMLTRKSEGPFSTLCADFVGPLPR
FT                 SRKGHTMLLVFLDHFTKWVELIPLRRATATSLELAFRERILARFGAPKTFI
FT                 CDNGTQFTSRAFKAFCKKAGIEVQHTAPYSPQQNPTERANRTIKTMIAQYA
FT                 TEDQRTWDHLLPEITLAINTSVSDSTGFSPAYLVQGREPRLPGSWFNEVTP
FT                 GASEAPRDPQSKAEHLKNIFQTAKENMERAAQEQSRYYNLRRREWRPTIGM
FT                 WVWVRTHHLSNAAEAFDAKLAPKFEGPYKIIKFLSPNIARVQLRGTRKRRN
FT                 ANLADLKPFHGDQTAEDPEEDAEGIHES"
XX
SQ   Sequence 5487 BP; 1486 A; 1708 C; 1352 G; 940 T; 1 other;
     cgcgaaaaat ttttccctgg ggaaacggga aagaaaatat aaatatgtgt ggttgcgcaa        60
     aaccacacat acgtaatttt tttttcctcc tctctcgctt cccacgttgt cccgaacgcg       120
     gcggacacgt ggccggcgac tataagagga gcacaccggg ctaccagaag tcagtcaagc       180
     tccggccatc aagcggggaa catcgtcgcg aacaagccca ggaccctagt ataagatcct       240
     agtatcctag ctcgcgcaat caaaggaccc cagagtcctg taaacattcg gcatcctagc       300
     ccgaatccta gcaccgtgca cagcaaggac ccccgagtcc tataaatatt cggtaccctc       360
     gccccgaatc ccgcgtacgc aacaaggacc ccgagtcctg tgaacattcg gcatcctagc       420
     ccgaatccta gcaccgtgca ccaacaagga cccccgagtc ctgtgaacat tcggcatcct       480
     agcccgaatc ctagcaccgc gcacaaagga ccccmgagtc ctgtaaacat tcggcatcct       540
     agcccgaatc ctagcaccgt gcacagcaag gacccccgag tcctataaat attcggtacc       600
     ctcgccccga attatttttc cgcgcaccac taagcggtac gattttttta aattcttttc       660
     ccccctccgc tctctgtcgc tcggaaacca tgggtgtaag gtggatatcc tatcgccgca       720
     aagaggaact acaactcctc ttagccgagt tcgggttacc ccaaggggga accgtcgagg       780
     aactgcgcag tcggctagcg actttcctca cccgggagga cctcgagccg gaactccagg       840
     accgagccaa ggaattggct agtacattcc cagaagcagc cacacccagg gacaaatccc       900
     cgagccctct gggaggacaa gaaccccggg aacagaagct aagcacaccg ggcgtcgaca       960
     ccgggagcac ctccctaaga ctggaagtac cgccaggcaa ccgaccgaca aggaacacaa      1020
     acgcggaccc tcccgcacgc gaggaaatat cctccgccac cttggcggaa aaactgcgga      1080
     gctggggcat tttattcgac ggacagaccg acccgctcca tttgtcgaac gcctggaagt      1140
     acaagccgac gcataccgac tcaagaccgc acgactcccc agggtaatct ccggattgct      1200
     tacgggaaga gcggaaagtt ggtaccgcac attccagatg caggacgtga cgtgggaaat      1260
     cttcaggaaa gaatttcttg aattcttcct cccaccacaa tacttccaac gattggaaga      1320
     cacgatccgg acgagatacc agcaaccggg cgagagctgc aaggaatacg tagttgagct      1380
     ccgactcctg atgcagcggg caaagtttac tccggcgcag gaactggagc gactctacca      1440
     gaaccttcga ccggaatacc agttatttgt gaggcggcaa gacttcgagg atctggccac      1500
     tctgatccaa cgggccacgg cctatgagat cacacgcgac cgcgatcgag cacttcatac      1560
     aaactttcta gcagctatgc cacaccgaca acccagacga tttccagctc ccataccatc      1620
     cacaggaaac gtgggtcacc ccctggaact tccaggcacc ccggcgacaa atcgaatggt      1680
     ggcgcaggta cccgaacacc gtatcgatgt acggaacgct tgtccccgct gcggggagac      1740
     aggacacttc cgccaagagt gccccaatcc ccaggtcctg ttctgctggc agtgtggaag      1800
     gaggggagtg cgaaccaacg aatgctgtcg ggcccgaaac ccgggaaacg gaccgagtcc      1860
     tcgcccatcc ggggaaccag cgaggaccac acaccaagga ccccagaact aaccccacct      1920
     ttacggtttg aaggggggcg catcgtggcg acggtcagca tcgaggggaa gacgtttcac      1980
     gccaccctgg acaccggggc gtccaggagc ttcatcagcg cgaaaatagc cgacgacatt      2040
     gggagtacca ataaccgccg ggatgtacga acgaggattg ccctggcaga tggatccacc      2100
     accgacgtca cccacgccct gaccaccacc gtaaccctag gacgggatac ggctaagacc      2160
     acactgctag tgctaccgtc catcttggac gagatcatcc tcggaatcga cttcctctgc      2220
     gggatcaaga ccactatcca gtgtgggaaa gcccagttgt ctctctccta ctacaccccg      2280
     ccgctaacaa gcagaagcaa gccacccatc gtcaccccac gagtagctgc tatcagtcca      2340
     agcgccgtcg gaccaacacc atcaccacgc tgcacggtac cacccgtggc agcccctcga      2400
     cgatcggcgt ctcgaataca agtcaacgcg cctaccgtaa ccccacgacg atcaccggca      2460
     cttctacaag tggagacccc caccgtaaca ccgcgacccc gacccacgcc gtcaccagtg      2520
     aataactcct tttatttaaa acctttggcc gacgccgccg cagcacggaa aagcaacccc      2580
     tttcgaaagt caccaacgac tacccaccca ccgggacaaa cccaagaggt aacagccagc      2640
     ctagcaacgg tcatcactga aggacccgag gaatcccgga tccaagcctt tctcgaagcg      2700
     gaactcgctc cattcgagca tatgaccggt acctctcaca tagccgaaca taggatcgtc      2760
     atgaaggacg acaagcccat caagcagagg tacttcccaa agaaccctgc catgcagaaa      2820
     atcattgacg aacaggttga tgaactgctt cgcgacggac gcatcgagcc ctcccggagt      2880
     cctcacagcg cacccatcgt cctcgtcggc aagaagacag gagatgtgcg catgtgcgtg      2940
     gactaccgtc agctcaacgc tcactcggtg cccgacgcct acccattacc gcggatagga      3000
     cacatcttgg aacgacttcg caacgctaag tttcatctcg acgctggatc taaaaagcgg      3060
     ttactggcag atcccggtgg ccccagacag ccgcgcctgt accgcattta ccgtgccggg      3120
     ccgcgggctc ttccagtgga aagtaatgcc attcggcttg cactcggctc ctgctacatt      3180
     tcagcgggca ctggacagcg tgataggacc cgacatggag cctcacgcat tcgcctatct      3240
     agatgacatc atcgtcatcg ggacctcgtt ggacgaacac ttcaccaacc tacgggaagt      3300
     actccgacgg cttaggcagg ccaacctgaa gctgaataaa gcgaagtgta agtttttcca      3360
     gcgcagcata acttacctag ggcacgtcat cagcgaagac ggaatccaca ccgacccaga      3420
     caagatagcc gctgtaagag aactccagcc acccactaac tgcaaggaac ttcgacgatg      3480
     cctggggata gcatcctggt accggcgatt tgtggagaac ttcgccacaa tcgtccaacc      3540
     aatgtccgcc ctgctcagga agggaaggaa atggacctgg agcgaccctc agcaacaggc      3600
     attcgaggag ttgaaaagga agctcaccga ggcaccagta ctggcctgcc cggacttcaa      3660
     cctcaaattt caactacaaa ccgacgcaag cgacttcggc cttggagccg tcttaaccca      3720
     gcaagtcgat ggaaccgaac gagtcatcgc ctatgccagc aggaggttgc ttgcagcaga      3780
     ggaaaactac tctgctacgg aaaaggagtg ccttgcgata gtgtgggcaa tcaggaagat      3840
     gaggtgctac ctcgaaggat accgattcga cgttataaca gaccacctcg ccctgaagtg      3900
     gttgaactca atcgataacc cgacaggccg aatcgcacga tgggccctcg aactccaaca      3960
     attccagttt gacgtctcat accgacgggg aaaacagaac gtcgtcgcgg acgctctgtc      4020
     caggcaaccg ctagaaacgc tccagcaggt gaatgagacc aacgaaccgt gcaagtggat      4080
     caccgcaaag atcaagcaaa tcgaggccaa tccggagaaa tttcctgact acatccaaga      4140
     gaacgggcaa ctctaccgac acctcgacaa cgcgtttagg aaggaagacc atggagcatg      4200
     gagactttgc gtacccagca gccatcagcg tcgggttctg gaagaatgtc atgaccaccc      4260
     cactgcagga cacctaggga tcaggaaaac gaccactcga gtctgccaac aatattattg      4320
     gccgggtttg tttcgagaca tcgctcgtta cgtccgacaa tgcccagcct gtcagcaatt      4380
     taaggtgagt caacgcaaac aagcggggaa gatgctaacc aggaaatcgg agggaccatt      4440
     ctcaaccctg tgcgcggatt tcgtagggcc tctgcccagg tcccgcaaag gacacacgat      4500
     gttactggtg tttttggatc atttcaccaa atgggtggaa ttaatacccc tacgccgagc      4560
     taccgccacc agtctggaat tagccttccg ggagcgaatc ctggctaggt tcggcgcccc      4620
     aaaaactttt atctgcgaca atgggaccca gtttaccagt agggccttca aagcattctg      4680
     caaaaaagca ggaatagaag tgcagcatac tgctccatac tccccccaac agaaccctac      4740
     agagcgagcc aaccgcacca tcaaaacgat gatcgcgcag tacgccacag aggaccaacg      4800
     aacatgggat cacctgttgc cggaaatcac cctggccatc aacacgagtg tctccgacag      4860
     caccggattc agcccagcgt acctagtaca gggtcgtgag ccccgattac ccggaagctg      4920
     gttcaacgaa gttacaccag gggccagcga agcgcccaga gacccccaga gtaaggcaga      4980
     gcatctcaag aacatttttc aaacagccaa ggaaaacatg gagagagcag cccaggaaca      5040
     aagtcgctat tacaacttgc gccgacggga atggagaccg accattggga tgtgggtttg      5100
     ggtccgaact caccacctgt ccaacgccgc ggaggcgttc gatgcaaaac tagctccaaa      5160
     gttcgaaggt ccttataaga tcataaaatt tctgtcacca aacatcgcca gagtccaact      5220
     tcgagggaca cgcaagcgtc gcaacgcaaa tctagccgat ttgaaaccct ttcatgggga      5280
     ccagaccgcc gaggacccag aagaggacgc cgaagggatc cacgaatcct aaggaaggca      5340
     gggggccact tgagcctggg acccccacca ccctagggta cacacgccaa agtagcaccc      5400
     tagttaccac catcgaacca gcaacacaca cttcaaacac caacacgctc tcgtcaaacg      5460
     gactcatctc aacgcacacg cagagat                                          5487
//
ID   Gypsy-14_DRh-LTR repbase;    DNA;    INV; 1631 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DRh_;
KW   Gypsy-14_DRh-I; Gypsy-14_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1631
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1578-1578 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1631 BP; 404 A; 422 C; 416 G; 387 T; 2 other;
     tgtgaggaac cgtaagacgg ccctcacaat ttattttgta tattttgtag ccatgtagga        60
     tttttgtagc catgtaggat ttttgtagcc atgtaggaat atttgtagcc atgtaatatt       120
     attattagtt tagcttttta atagccaacg cacgcaacac atccgaacca tcgaacgcct       180
     gagcgcaacc aacacgctct cgctctcttc tacacacact tcgaacatca gcagctgcac       240
     acatttgaac catcgaacgc ctgagcgcaa ccaacacgct ctcgctctct tcgacacaca       300
     cttcgaacat cagcagctac acacactcga accgtcgaac gcccgagctt gcaaccaacc       360
     cgcncgaagc tcgaacacgc gcacaagctt ttcgtcgcac gatcgaacca aattgcaacc       420
     aacccgaccg atgttttcga gcaaggggaa aataatttcg cacgatcgaa ccaaattgca       480
     accaacccga ccgatgtttt cgagcaaggg gaaataattt tgcctgaaaa ctgccgaagc       540
     gccagcgcag cggcagcgac gccgacgcaa tgcatggggt gcgtgcgccg atatcaaaga       600
     ggggaaaagg caattactct tgaggcttcg cgcgtgccag attnaaatcg tgagacttcg       660
     caaaaacccg ggaaaccgcc ccgccgtgaa aattcgacaa gtgcgtgaaa aacgtgtgat       720
     acgatgtcaa ccgacagtgg cgaagttgat ggagtgtacg accctgttcc cgctgcggag       780
     gcatggggaa tcaactggct ggatttgctg tggacggaaa cgtaagcgtc cactatatat       840
     tttctcgata tatttttttg aaaacgacta gactggagtg gcgtgacaag gaggctttgt       900
     acgcccctcg aacaaaactt aaataaagaa aacaaagtat ttgaaaaccc aaaagctatt       960
     cgcctgaccg tgttttgtgt gtgagtgaac gtaggagggg aatgggaact attttctctt      1020
     gcctccatct aggaaaaccc cccttctctg ccgatcgtgg tcggaccgcg tggtggccaa      1080
     ggattacgac ggagtcttgc actcgcttgt cggatccgaa gctgttgccg gtcccggagc      1140
     gcgtagtggc cgtggattac gacggagcta ggctcgtttg tcgggtccag ggtcagtgcg      1200
     ggttccggag cgtgcggctg agagagattt cgacggagtc ttgtactcga ttgtcggatc      1260
     taaatccgct gcaggtttcg gcccatggtc ggcatctctg ggtgacagtg cccacaaaac      1320
     ccccttcctt ttcttttgtt gctgtttctg ccgatcgtgg tcggaccgcg tggtggccaa      1380
     agattacgac ggagctagcc tcgtttgtcg gatccaagga tcattgcggg ttccgatgcg      1440
     cgtggcgggt agagattacg acggagctct gctcgattgt cggatccaaa cccgctgtga      1500
     gttccggcca cggagtctga atagggtcat ttttatctcg cccctccctt gagtccttga      1560
     acttaaataa attattgtaa gtgaccctgg gagccctgag cacaatatcc cagcccaaga      1620
     acttccttac a                                                           1631
//
ID   Gypsy-14_DTa-I repbase;    DNA;    INV; 4389 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DTa_;
KW   Gypsy-14_DTa-LTR; Gypsy-14_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4389
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1622-1622 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3163-3636] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           151..4041
FT                 /product="Gypsy-14_DTa-I_1p"
FT                 /translation="MFNPDAPGADAAAWCKTVDMILSERPLEGGALVMALS
FT                 KSLLGNSSQWLSQICFAGMSWLEFKDLFLHRYEGIEPPSAVLLNILNGRPS
FT                 ANESLSVYGSRLVTSLLTKWKGMSQEEIAVSLVLAHTSQIEPRLQSSVFTT
FT                 NIKTRNELQQLLKAFAFNKVSDYSGLDQGPDRKKFKAQAQIKCHYCGKIGH
FT                 KAFECRKKKEEERNVAKPNHHAGKPLAGRERSAVTCFKCGNPGHIASVCTK
FT                 GTTSANNFNNEKRVDMCAVLEPTSIMKQMGESFIFFFDSGAECSLVKEKLC
FT                 NKLAGKRIYNTVVLRGIGDNIVKSNLQVLATVNISEFNVEVLFHVVKDNYL
FT                 KYDIIIGREILQLGLGVTIDANKLTMYRNQIVNVVSNETSISILENLLNDN
FT                 VELADNDKIILRNILNEFSDRFITGMPHRRITTGELEIRLIDEHKTVQRRP
FT                 YRLSAEEKLIVRDKIQQMIESNVIRPSSSPFASPMLLVKKKDGSDRLCIDF
FT                 RELNANTVSDKYPLPLIADQIDRLRGSKYFSSLDMASGFYQIPIHTDSIEK
FT                 TAFVTPEGQYEFLAMPFGLKNASSVFRRAIVRALGDLAYSYAIVYIDDVLI
FT                 VANSKEEAFTRLKVVLKALSDAGFSFNIKKCTFFKTGIEYLGFYIKDGEIK
FT                 PNPRKIEALSALSQPTTATQLRQFIGLASYFRKFVPRFSERMKPLYQLTSK
FT                 ANGFAWKENHEQIRKKIIDVLTSDPVPTIFNPELPIELHTDASADGYGAML
FT                 LHRIDGTCRVIEYFSKCTSASESKYHSYELETLAVYNAVKHFRHYLHGRKF
FT                 VVHTDCNSLKASRTKAELTPRVHRWWAFLQAFDFSVEYRKGTQMAHVDCLS
FT                 RNPIPDVPKTINKVVEVRVDLAAITDNWLIAEQQRDLGIVDIMTQINGGEM
FT                 QVDRAKTYEVRAGLLYRKIQRSGKTRCLPVIPRAFRWSVINHVHEAIMHLG
FT                 WQKTLNKVYEQYWFESMSKYVRKFVENCITCKLSKPSTGKVQMELHPIPKV
FT                 EIPWHTVHIDISGKLSGKNDLKEYIIVQIDAFTKYVYLYHTLNLDTENCIN
FT                 AVKAGISLFGVPSRIIADQGRSFASGRFRDFCSSNKIQLHLIATGASRANG
FT                 QVERVMSTLKGMLTAVETSERSWQDALMDIQLAMNCTSNRVTNFSPLELLI
FT                 GKQARPLGMLPIISEPKIDCKEARAEAKENMDKNAKYDKSRVDQNKAKVVK
FT                 HGIGDHVLLRSEERHQTKLDPKFKGPFVVTELLEGDRYLLKSLTSKRTYKY
FT                 PHESLRKLPDNRVASELLKESDGVEMDAEDELRSVT"
XX
SQ   Sequence 4389 BP; 1418 A; 807 C; 1035 G; 1129 T; 0 other;
     tcagaagtgg gatccccatc gccacaagaa cattctgaca gtgtgttgca ggcgatttta        60
     gagacacaaa accgaaactt tctagagttg ctgaaaactg tgcaaacaac atcgactgca       120
     gcctcgcaaa atatttcggt gacattgcca atgtttaatc ctgatgcgcc tggagccgat       180
     gccgcagcgt ggtgtaaaac cgtggatatg atcttatccg agcgtccact ggaaggcgga       240
     gcactagtca tggcgcttag caagtcgctg cttggaaact cttcgcaatg gctgtcacaa       300
     atttgcttcg ctggaatgtc gtggctggaa tttaaggatt tgtttttaca ccgctatgaa       360
     ggcatcgagc caccgtctgc cgtattgctc aacattctca acggacggcc gagtgcaaac       420
     gagtccttgt cagtatatgg cagcaggctg gtgacgtcac tgctgacgaa gtggaaagga       480
     atgagccaag aggagatagc tgtttcatta gtgttggccc acacgtccca aatcgagccc       540
     aggctgcaaa gttccgtttt cactacaaac ataaaaactc ggaatgaact gcagcagctc       600
     ttaaaggcgt ttgcattcaa caaagtgagc gactactctg gattggatca aggaccggac       660
     aggaagaagt ttaaggcgca ggcgcaaatc aaatgtcatt attgcggcaa gataggacat       720
     aaagcgtttg agtgccgcaa gaagaaggaa gaagaaagaa acgtcgcaaa accaaatcat       780
     catgctggca aacctttggc tggacgagag aggtcagcag ttacttgctt caagtgtggc       840
     aatcctggtc acattgcatc tgtatgtacg aagggaacga catcggcgaa caacttcaac       900
     aacgagaagc gagtcgacat gtgtgcagtg ttggagccaa ctagtattat gaagcaaatg       960
     ggtgagagtt ttatcttctt cttcgattcg ggtgccgaat gctctttggt caaggagaaa      1020
     ctttgcaaca agctggctgg aaaaaggatt tataatacgg tagtgctaag aggaataggt      1080
     gacaacattg ttaaaagcaa cttacaagta ttggcaactg taaatatttc cgaatttaat      1140
     gtagaagtcc tatttcatgt agtaaaggat aattacctta agtacgatat tataattggt      1200
     cgagaaatat tgcagctagg tcttggtgtc acgattgatg ctaacaaatt aacaatgtat      1260
     aggaatcaaa ttgtcaatgt agtgagtaat gaaacttcga taagtatctt agaaaatctg      1320
     cttaacgata atgtggaatt agccgataat gataagataa tattaagaaa tattttaaat      1380
     gaattctcag atcgatttat aactggcatg ccacacaggc gtataactac aggagaatta      1440
     gaaattcgtc taattgatga acataagact gtacaaagac gtccgtatag actaagtgca      1500
     gaagaaaaac taatagtcag ggacaaaatt caacaaatga ttgaaagcaa tgtcatccgc      1560
     ccaagtagct ctccattcgc tagtccgatg cttttagtta aaaagaaaga tggcagtgat      1620
     agactatgca ttgattttcg cgaattaaat gcgaatacgg tgtctgataa atatccattg      1680
     ccattaatag cagatcagat agatagatta cgcggtagta aatactttag cagtttggac      1740
     atggccagcg gattttatca gataccgatt cacaccgatt ccatcgagaa gacagctttc      1800
     gtgactccag aaggccaata tgagttcctt gctatgccat tcggtttgaa gaacgcttcg      1860
     tcagtatttc gaagagcgat tgtacgagcc ttaggtgatt tggcatactc gtatgcaatt      1920
     gtctatattg atgacgtgtt aatagtcgca aactccaaag aagaagcttt tacaagattg      1980
     aaagttgttc ttaaagcctt gtcagatgcc gggttttcat tcaatataaa gaagtgcaca      2040
     ttcttcaaga caggaataga gtatctcggg ttttatatta aagatggcga aattaaaccc      2100
     aatcctagaa aaatagaagc tctatccgca ttaagtcaac caactactgc cacgcagtta      2160
     agacaattta taggtttggc ttcatatttc agaaagtttg ttccacgatt ctctgaacgg      2220
     atgaaaccat tgtatcaatt aacttctaag gcaaatggat ttgcttggaa ggaaaatcat      2280
     gaacaaatac gtaaaaagat tattgacgtg ttgacaagtg acccggtgcc gaccatattc      2340
     aaccctgagc ttccgatcga gttgcataca gacgccagcg cggatggcta cggtgcaatg      2400
     ctccttcaca ggattgacgg cacatgtagg gtgatcgagt atttcagtaa gtgtacatcg      2460
     gcttcagaat caaaatatca ttcttatgaa ctagagactt tagccgtgta taatgctgtc      2520
     aaacattttc gacattacct gcatggtaga aagttcgtcg tccatactga ctgcaattcc      2580
     ttaaaagcga gtcgcacaaa ggctgaactg acaccacgag tacaccgatg gtgggcgttc      2640
     ttgcaggcat tcgattttag cgtagaatat agaaagggaa ctcaaatggc acacgtagac      2700
     tgcctatccc gaaatcctat tccagatgtc ccgaaaacga taaacaaagt agttgaggtt      2760
     cgcgttgact tggcagcgat aacggataat tggctaatcg ctgaacagca aagggactta      2820
     ggtatagttg atatcatgac acaaataaat ggaggtgaga tgcaagttga cagagctaaa      2880
     acttacgaag taagagccgg tttgttgtat cgcaaaattc agagaagcgg caagactcgt      2940
     tgcttaccag tgattccgag agcttttagg tggtcggtca ttaatcatgt acacgaggct      3000
     ataatgcatc ttggatggca gaaaactcta aacaaggtct atgaacaata ttggtttgaa      3060
     agtatgtcga agtacgtcag aaagtttgtg gaaaactgta taacctgtaa gctctccaaa      3120
     ccctcaacag gcaaagtaca aatggaactg caccccattc ccaaggtaga aattccctgg      3180
     cataccgtac atattgatat tagtgggaag ctgagcggca aaaatgactt aaaggagtat      3240
     atcatagtac aaatagacgc attcaccaag tatgtttacc tatatcacac actgaatttg      3300
     gatacggaaa attgtatcaa cgcagtaaag gcaggtatat cactttttgg ggttcctagc      3360
     cgtatcattg cagatcaagg taggagcttt gccagtggtc gattccgtga tttttgttca      3420
     tcaaataaaa ttcagttaca tttaattgca acaggggcaa gcagggcaaa cggccaagtg      3480
     gagcgcgtga tgagcacgtt gaaaggaatg ttgacggcag ttgagacaag cgaacgctct      3540
     tggcaggatg cattgatgga catccaatta gctatgaact gtactagtaa tcgggtgact      3600
     aatttcagcc ccttagagtt actaatagga aagcaggcaa gacctttggg catgttaccc      3660
     ataatatctg aacctaagat agattgtaag gaagctaggg cagaagctaa agagaatatg      3720
     gataagaatg caaaatatga caagagtaga gttgatcaaa ataaggcaaa agttgtgaaa      3780
     catgggattg gcgatcatgt cttgctaaga agtgaggaac ggcatcaaac gaaattggat      3840
     cccaagttca agggaccgtt tgttgtaaca gaattgttgg aaggtgatcg ttacctgttg      3900
     aaatcattga ctagtaaaag aacatacaag tatccgcatg agagcttgcg aaaactacca      3960
     gataatcgag ttgcatctga gttgctcaaa gagagtgatg gcgttgaaat ggacgcagaa      4020
     gatgagttga gatctgtcac ctaagagggg tgcacaggac atcacacaca gaggctaagt      4080
     ttgatctaat gagagattgt ggcactaaag gtgcatatcg tcgcaagtgg cggcaagagc      4140
     ctgcactgtg ttgtgataaa ttgtaagcca aatggtcggg tttgcgcaga agagtacaag      4200
     ctactaataa gaaagagtta tcctgccaaa ctgtcatttg aagacacaag aggtgtattg      4260
     agggatttaa aaaaaaaagt catgatttaa gttaatgagt aacttcaaat ttgtttcaga      4320
     ttagcaaaat gtgatgccaa tccaatgtta agccatgcac acgaggacgt gtgatagtca      4380
     ggatagccg                                                              4389
//
ID   Gypsy-14_DTa-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   29-DEC-2011 (Rel. 17.08, Created)
DT   29-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DTa_;
KW   Gypsy-14_DTa-I; Gypsy-14_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-351
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1623-1623 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 351 BP; 113 A; 69 C; 87 G; 82 T; 0 other;
     tgtcgagaga attagtaata atacaaatca atgttaaata taactgagag aaacctgtca        60
     ttttaaataa agtattgaga aaaggaagtg tgaccttctt agaccgttta agggtttcaa       120
     gagcgtggct aggtgggaac ccaccttagc cgagtgtggc gcaattgtgg ttgcaacgta       180
     gagttgtgca aagtagtaga gggttcagga ctcattcttt cgagaacctt cgaacgggca       240
     acacgaacaa ttgcaactcg ctgcgcgtct tactaagaaa acccaagtgg aagttaagtc       300
     atgacggaca aaccaactcg cgaagcggct aagagacccc tgtctccgac a                351
//
ID   Gypsy-14_DWil-I repbase;    DNA;    INV; 7942 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DWil_;
KW   Gypsy-14_DWil-LTR; Gypsy-14_DWil-I.
XX
NM   Gypsy-14_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-7942
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   Positions [6162-6623] - Integrase core
CC   LTRs are 100% similar to each other.
XX
SQ   Sequence 7942 BP; 2694 A; 1813 C; 1671 G; 1764 T; 0 other;
     ggcgcccgag cagggacccg taatttttct agaagccatg atagtgctaa ccgcccttcg        60
     gggggaatct agaaacatta cgggtctaga caataacagg aagagctcca cagttgaatg       120
     caagccatgt cagtaaaacg catattaaag aaaaataatt aattgctcag gcacaaacct       180
     gacctatccc aaatatcaaa aaaaaacaaa acacgaaaat aataatattg gccactaggc       240
     caacgggaaa tgcttcacct gattatggtg atatttgaaa ccaacgcgtg cctcggcttg       300
     cataaagctg ctgactcttc aagtaaccat cccgaacgcg ttttgctaaa accgcattct       360
     cacgccagca gagtcaggca aggtggaatt agcaaaacga agggaaattt ttgcgcctct       420
     tgcatttttg gcgtgaacat gtaaataaaa gaaaccggaa gggaaatgac acgctcccgt       480
     ggcaacaggc ctttaaaaaa aaaaaaaaga gaagaaaaaa ttgtaaaaaa aaaagaaaga       540
     tgaccacatg cagtgaggtg gttcaatatg gggggacatg tcatctaatt cctctttccg       600
     gtgtcttgca ataagtgaat gactggttga aagaccaagt cctccttcag agagggcgga       660
     aagagttcat tctgaattaa cgactaactg gttgaaagac caagtcctcc ttcggagagg       720
     gcggaaagag tcgttttgat tagcgaatga ctggttgaaa gaccaagtcc tccttcagag       780
     agggcggaaa aagttcattc tttgaatgac tggttgaaag accaagtcct ccttcagaga       840
     gggcggaaag agttcattct tgattagcga atgactggtt gaaagaccaa gtcctccttc       900
     agagagggcg gaaaaagttc attctttgaa tgactggttg aaagaccaag tcctccttca       960
     gagagggcgg aaagagttca ttcttgatta acgaataact ggttgaaaga ccaagtcctc      1020
     cttcagagag ggcggaaaga gtcgtttgat tggctgaatg actggttgaa aaaccaagtc      1080
     ctcctgcaga gagggcggaa aaagttcatt cttgactgaa aagccaaacc ttccttctga      1140
     gaaaggaact gctgaaagta aacgtatacg aatggttgaa aacccaaaaa ctagtacccc      1200
     aactgaaaat attaaacttt tgttcttgat tctgtcattt agtttattac tcaggttatc      1260
     ttggccgtct gcgagcagga gtggggtgcc tccacttgag tatactcctc aggttgggac      1320
     acccagctcg ccttctattt ttcctcgtat cggaaaactg actctaaaga atgtgtcttc      1380
     aacctgtgta taatggtgat cgattcctca catggtggag gttaatccag atattcctga      1440
     atgatcaact caggaacgtt aatcggcttc gggaacggaa aggggattgt ttcctcatct      1500
     tcatccggaa caggcgcagt aattcctgag ctggcaaagt catcctccca tatattgtaa      1560
     ctctgatcaa agctggggga ccctcctctg atgacccgag ggaacaattc agaactcaaa      1620
     tccgcaacta tgatttcctc ctccatgctc tcgtcatcag aaggggaatc gcaataaatt      1680
     attcccgttt gcacagttgg gttgaagttt ccgtccgatc gcttcatatt cttggctgat      1740
     actaaattaa accttacacc agcactgacc actatggtct ttgaagacga gaatatgctt      1800
     agtcagacgg ttgaggtaaa agacacaaaa attcctaaaa aacaacaatg caggacagaa      1860
     tcaacgcata aaaggggtga aggggaaaat atgaaacaca tgcacaagcg cattttcaat      1920
     tatgcacgct cagcttaaat aacgcgaaaa ccggaaattg ttaccccttc caagagtttg      1980
     agaaatagtg acagtagtag agattcaaat ccaggtatac acatacacac tttaggagtc      2040
     acccactcat aaaaacaagt atcgcgtcct acaataggga atatagaact atgtatttaa      2100
     aaattgaaaa cagttgctgt aaaaaaaatg aaatgagtga caacgaaaac ttgagcaatt      2160
     ggcagccgca ggagatgccg cgtacgtcac attggacaat gataccatgg tgaatacgca      2220
     ccagtagtca cccctgtgac ccatagcgaa cctagatccc gagtcgagtc aaccggtcaa      2280
     gccggaatac tcaatttaaa aacctacgtt cccaatttga atgccaacgc agcattttag      2340
     agatggaaga aaaagtaata tttaagtatc atgatgaaat ggggcatgta ggagtagaca      2400
     aagtagccga cttgataggt aaaaatgatt ggtttcccag catgagaaag aaaattgata      2460
     agcttgtaaa aaaattgtct caaatgtata acgttttcaa acaaatcagg aaaacagaag      2520
     gatttcttca ttccataccc aaaggagata acccgtctca atatttacat atacatagat      2580
     cactatggac cgatacatag taaagatagc aaaatgaaac acatattagt cgtaatagat      2640
     gcatgtaagt tatcatataa agctttgaga ctccaaagct tgcgcagatc gcaggtgata      2700
     tccagctcta cagttatcac tcgaggcttt ggtcccacaa agcttgtata ttgcagctga      2760
     tagcagcttg agctcgatag gcttgaagcc cgcacccacg tgtgcggtta tttgctacaa      2820
     agagtacgaa atcaagtgaa gcaatcgaag cactggaaga atacttcaaa gtatatagta      2880
     aacccaagaa tataatatca gatagaggca gttgcttcac ctccaaaggt ttcgatgatt      2940
     ttattaagga atgtaatgtt aatcatataa aaaaagcgac agcatcacca caggctaatg      3000
     gacaagttga gagagtcaat aaagacctag gacccatgat tgccaagtta gttgacagtg      3060
     aaaacaataa gcaatggcat acagtattgg ataaggtaga gtttacaatg aataacacaa      3120
     gaaacagatg caccaatgaa tatccaagta taatgctatt tggtataaaa caagaggtag      3180
     catgatagac agcttaaagg aaaatgtaat agaagtgaat caagtttaag aaaatcgaaa      3240
     cttaacagaa ataaaggaaa ctacgcttcg acaacaggaa atcaacagtt cgagcgaatt      3300
     tattcgcaac ctaaacatgg aggtgaggat acacctcgta cattacgctc cgacaacttt      3360
     aaacaccacc taccgggccg cttgaacgtt gttgataaga tccaagagta cgaaatcgac      3420
     atgccaggga ccagccaggg tggtaacgac tatcggcccc cactctccga taaaaatcat      3480
     aagcccaatg acaatccgtt caggggaaat tacaagtctg gtaaagacta caaacataac      3540
     aactacaggg gacgaaattc ctacaagaaa tccaattggg aaaacaatta cggccagaac      3600
     aacggacacc aacaaggtgg gaataaaaat gatcaaagga aaccggaaaa tcaaacacac      3660
     aaccaaaggc aagccttgaa tcatctaacg atggaggaat cgaatatccc cgaaaactcc      3720
     aggggtgagt ctaaacactt ggatgatcaa cgaagcccaa aaaaggctga aaattttatg      3780
     aagccagccg aaccggagtt ccgtacctaa agtacgtcac caaagatggg gaatgtctca      3840
     ccttcctcat cgatactggg gccgcggcca attacatcca gaagcgacac gccccccatg      3900
     gtcaacaaat gacacgacct ttttacaccg cttccgttgg cggaagcatg aaaattacac      3960
     actacataga ggggcaattt tttaaacctt tcgggatcga aacaaccgtc attttttatg      4020
     tcttgcccaa cctggtcgac tttgacggga tcatcggcga cgacacacta cgcaggatac      4080
     aagccgtatt ggaccgctcc accaatcaac tcatcatgcc acaaggcgta aaaatcccac      4140
     tatctatgat gagctcaacc gcagcaaaca tgatggccac cccgaagtcg tatacccctc      4200
     agcttgatga aataatccat tccttcagcc acatttttgg acccttagtt gagtcagaaa      4260
     ccgtgacaac ggaggtaagg gcggaaatcc gcacgattga ccaggagccc gtctacacac      4320
     acacctaccc tttcccagcg ccaatgatgg gagaggttaa gaggcaaatc aacaagctac      4380
     tggacaacaa aaccatcagg ccatcaaaga gcccatataa ttctccctta tgggtggtac      4440
     ctaaaaaacc aaaaccaaat ggcgagaagc agtatagatt ggtaatcgac ttcaagaaat      4500
     tgaatactgt gactatcgct gatcgatacc ccattccgga tattaactcc acgctggcta      4560
     gcctcggcaa ggccaaattc ttcaccactt tggatttgac ttcaggtttt catcaggttc      4620
     ggatgcgcga aaaggacata ccgaaaaccg ctttttcagt cctaaacggg aaatacgaat      4680
     tcctaagact cccgccatct ttcaacgaat gatcgacgat gtccttcgag accttatcgg      4740
     ggtatgctgc tacgtataca ttgacgacat cataatattc agcaagagcg aggaagagca      4800
     tatgaccgac attcgaaggg tctttgagaa agtctcggag gccaaccttc ggatcaactt      4860
     ggaaaaaaca accttcatga aaaacgaggt aaacttcctg ggatatacgg tgtcaagtga      4920
     gggaatacgc accgatgaga agaaagtggc ggccgtcacc gcaatgaagc ccccaacaaa      4980
     cttgaaggag ctcaagagct ttttggggat gacgtcatat tacaggaagt tcatccgtga      5040
     ttacgccaaa gtagccaaac ccctcaccaa cctcacgagg ggggaactgg ggcaagtaaa      5100
     agcaaaccaa tcgaggaaag tacaaatcac cttgggtgaa attgaattga aggccttcga      5160
     ggatcttaag gcgttgctgg tttcatctga agtcctggct tttcctgatt tcaacaagcc      5220
     attcaacctc acgaccgacg catccaacga ggcattaggc ggtgtcctgt cccaggtaca      5280
     agacggaaaa gatcggccga tttccttcat ctctagggga ttatcccaaa cagaggaaaa      5340
     ctacgcaaca aatgaaaagg agatgctggc aatactatgg ggactggaaa cgttgcgctc      5400
     gtatttgtac ggagcagaag acatcagggt atacaccgat caccagccgt tgacttacgc      5460
     cttaggaaac cgaaactcga acgccaaatt aaaaagatgg aaggcgagga tcgaagaata      5520
     taactgcaaa ttgttctata agccaggaaa atctaatgct gttgctgatg ccttatcacg      5580
     catcacctcc catctaaacc ctctcagact tgcaccgtca gcaggacaaa cactccgcct      5640
     cccattactc agggtcaaca ctccactcaa tgctttccga aaccagataa tcttggtcat      5700
     ggggacagac atcgacacct ctaccgaacc tcacccaggt gttcagcgac atattgttca      5760
     cataaattta acacaagaca ttgccatatc tagagctgcg ctggaaggga ctctttccaa      5820
     aacccacata aatggaatca aggttccgga aaccgctgtt tcagaaatgc aacccataat      5880
     ctgggaatat ttcaacaact acaaaatccg tctagcgcaa gaaatagtgg aggatataac      5940
     ttctgaagat cagattcagg aaataatcca aagggaacat cgaagagccc ataggagtta      6000
     ctgggagaat aaacaacaaa tcttatcgag gtattatttc ccgaaaatgg cagcaagaac      6060
     aaaaagctat gtgtcaaaat gcactacatg tggaacccaa aagtacaacc gacgaccaaa      6120
     gaaaccacac ctacaaccga caccgatacc ccgcatgcca tgcgaaattc tacacatcga      6180
     tctcttcgta atcgagaaac tatggttctt gtcctgtatt gacaaattct ccaaatatgc      6240
     aatgttgttc cctatcgaga acaggtcgtc tatacacctc aaggagaaac tcatggacgt      6300
     cctagcatac ttctcggtgc ccaagctaat agtcatggac aacgaacggg gactattatg      6360
     ccccattatc atcaacctct tgcacgaact acaaattgag atttatcgta caccttcaca      6420
     aaaaagcgaa gtaaatggac aagtagaacg gttccactcg acattcttgg aaatgtaccg      6480
     atgtctacgc atagagcacc cgaagttgag tgccgcccaa ctagcaaaac taacggtcgc      6540
     tagatacaac gaatccatac actccgtaac caagcagaaa ccggccaacc tttttttcaa      6600
     ccgaacatcg gagcaagaat tagccaacaa cacaaatccc agggaaacgc tcttggaaaa      6660
     tatcagagga ttgctcgaac atcaacaaac gactacaaat agggccaaga acttaaaaag      6720
     ggagaaacct ttgtcgtacg aggtcgacca agaaattttc gtagccaaca aacagatcaa      6780
     gggtaaacac gtaaaaaggt ttttccagga aaaaatcgct caggacaata aggtcacggt      6840
     agtcacacaa acagggaaaa atctacacaa atcacacatt aagtaaaaag aaaaaactgc      6900
     cccctcattc tgtgtctctc attggcggag agctacaagg tctttaagta tgagtcccca      6960
     atcgtgacgt tgcaacaagg aaagggatgg agaattgaag gacactcaaa tctggtacat      7020
     gtaatccctc tcgattcatt cgcgggcttt gtcgaaaact tgtcatcagc cctggatcaa      7080
     tatcattctg gggacttgaa gacattggcc accctgaaaa ttaaggatct aaacataaaa      7140
     atcgaggaac tcacggcccc ccacaggagg attagacgag caatcagatg gttaggctca      7200
     gcttggaaat gggtagcagg atcaccagac gcagctgact gggaccagat cctacaatca      7260
     caggactctc tgattagaga aaataaccaa caattcacta tcaataaaca attcctatcc      7320
     ggcattcaag aagcattcga caaaacaaac gaacttgcag gagccctgaa cacaataaac      7380
     aaggataacg actccgaact atccatcctg ttgaacaaaa tcttgctact tgaacggaag      7440
     ctggatgaga tcgtgcgagc atgccaactc gcaaaagttg gggtgatcaa ctcaaaccta      7500
     ctggatatag acgagttgca ggacattatc aacaccacac caagcttgcc ctataacaac      7560
     atcattgagg ccatcgaatt tgccaaacct actatcttcg taaacgggac ctttgttatc      7620
     caattttcca acgaatcggt gaccatcggt aacaaaactt ccagaagcca gacggttaca      7680
     aggatggtgg ctataccatc caccttgtcc gaaatcgtaa acgaaggaca ccgactaaac      7740
     gtggaataca ttcacgactt gcacataaac aatctacgac gcctcaacac tctaacgaaa      7800
     ggaaccacca tcacggccgg ctgcaccatc ctcgtattcc tcgccatctt cataggttgg      7860
     attctgaaga agacgctcca gaaaccagaa acaacacccg aaattaaggg atctccggga      7920
     cgtcgatttt taagggggga gg                                               7942
//
ID   Gypsy-14_DWil-LTR repbase;    DNA;    INV; 857 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_DWil_;
KW   Gypsy-14_DWil-LTR; Gypsy-14_DWil-I.
XX
NM   Gypsy-14_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-857
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-857
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 98% identical to the consensus.
XX
SQ   Sequence 857 BP; 249 A; 263 C; 147 G; 198 T; 0 other;
     agttagcaca ctcatcctca tgcgaggcct cctcccatac aaccagcgcc cctggaacgc        60
     cttatccttc agtcaccaga ccatgcccca cacctcggca tctgctatca caacaggact       120
     cgaccgtcac tttctaccaa aaacgtctgg acgagcatcg ggcaaaatac cctctatcaa       180
     tctaagcctt gaccttacac tcacatttca tgcactcaca tttcacacat gttagggaca       240
     ttaacagacc acacaacacg cgtgcatcgc gacccacact agcaatctaa gtggcaccag       300
     cccactcaca tttcatacac tcacatttca cacactcaca tgtcacacac caacagacca       360
     cacacagcac gcgtgtatct ttttagccga ctaatttcct gtaaccacac ttagccaagt       420
     aagcgactta tgtcccctag tacttatgcg accctagcaa aacgcgaccc tcgtcgttca       480
     cactaggcac ttcacttccc cttctagcgt aagcactttg aatattgccg ataagcagaa       540
     ttcgccggaa gaggcgaccc acttctgaca cgatcccaac gccgctgcca gcgacacgac       600
     gccgcagtca gcgccccttg ggcatcttgg agtatattta aaggatcacg ctcgacaggg       660
     agggcagtct taatcttgac attgtacaag tgacatcgaa ctagtatcga ataagtgaat       720
     aaaaccaatt tataacgttt aattgtgtgt tgtatcgtta ttctgaacaa agatcctgaa       780
     tatccaagcc ttaatcctct tcacaaggaa ggacatggta agataatccc atttaagtcc       840
     aatgggaacc cgtaact                                                      857
//
ID   Gypsy-14_HeAr-I repbase;    DNA;    INV; 3950 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-3950
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5562-5562 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..3871
FT                 /product="Gypsy-14_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTANITNIVFPGQFNPKTDKWCDYKEQLLCALDAAGC
FT                 DKHNLDKGRSLFLSQCGKETFALIASLLVPKRPTEVPLADIFTVLDQFYEP
FT                 EVNEILQAGKFYKRQQVQGESVQDFVAAISLLGAKCNFIDLKRQLRDRLVL
FT                 GVRDDRLRRDLLKKKDLTYEVALQMCLDYQVTFPDLYPACVASESKQTPSS
FT                 VTEAEPMDIGIVKSNECRRCVRAHRPGERCPFVKAKCFYCKKFGHIAAACS
FT                 KKPGREHQVDDMREANASNTSIEKMMGVYVCVENYSPPITTDVMIDGVQIS
FT                 MEVDSGASRTIMSEATYKRLWSTPPSLRATNLKLVTWTQDPLKVLGLADVR
FT                 VVLANKEAQCELVVVSGNGPNLLGRNWFHALGLQVSGLCWTEEEIEPYRRD
FT                 FPELFREGLGEYKGPEVKLHVRREATPRFLKARVVPYPLREKVIRQLNEMV
FT                 KAGVLSPVRYSEWATPITPVIKQDKTIRICGDYRATVNAAIDTDIYPLPTS
FT                 VEAFVRLSGGRIFSKLDLKNAYTQLKVDDETAMMLTLNTPIGLMKVNRLPF
FT                 GVSAAPAIFQRLMSTALAGMDGVACLLDDIAVTGATMDEHNRRLREVLNKL
FT                 QQMGLRLNVNKCVFAANSITFLGHMIDAEGLHPAPAKVKEIQEKSAPTNRE
FT                 TLRAFLGLYNFYEKFLPDKSTVLEPLYRLLESKRPWRWGEKEQEAFVEAKR
FT                 LLSSERTLVGYDLQKELLLICDSSEYGLGAIIAHVMDDGSERPVMMASRTL
FT                 QPHERRYGQIDKEALAIIFGVTKFHEFLAGRRFSIVTDHKPLVGLFNPAKP
FT                 IPDQISPRMLRWSLKLSSYNYSIKYRPGKLIGNADALSRWTAPDTSSVQEE
FT                 VLRDVLLLEEQPSGWELDASKIAAETNRDLVLQKVMFHVLHGWPRRNMDPS
FT                 LQAYWTRREALSHNKGCLLWSNRVIIPTSLQDKVLKLLHDPHAGIVQTKAY
FT                 ARGYVWWVDMDRQIERVVANCQQCQLVRNNPPKDPQTWIVPEKPWSRVHVD
FT                 FAGPFQGKTFLVLVDSYSKWFEAEIVPGMNSSTVIAVLRKIFTSQGLPEVL
FT                 VSDNGRAFTSDEFNNFLKRNGIKHLYSPPYHPETNGQIERTIQTFKNKMKK
FT                 LGNLDMQWQERLCKVLYYLRTLPNSSTNKTPAELLNGRRYRTAVSSLHPDS
FT                 MPSRTEQQLEAAAQRAPTRTFTLLQPVLIRMYGPGNKWCRATVETVEGPTT
FT                 YLVRTEDGELHRRHADQILARSQDTSDKGSPVIDSQPGNETDSELSQDPPI
FT                 VIPPPELWPDVVGIPND"
XX
SQ   Sequence 3950 BP; 1121 A; 815 C; 1069 G; 945 T; 0 other;
     ttggcgactg cggaaaataa gttagatttc ggtgaaaatg acggcaaata taacgaatat        60
     agtgtttccc gggcagttta acccaaaaac tgataagtgg tgtgattata aagaacagtt       120
     attgtgcgcg ctggatgcgg cgggttgcga caaacataac ctagacaaag gacgatcgct       180
     gtttctttct cagtgcggaa aagaaacttt tgcgttaatt gcatcacttc ttgttccaaa       240
     acgtccaaca gaagtgccgt tggcggacat ttttacggtt ttggatcagt tttatgaacc       300
     cgaggttaac gaaattttgc aagcgggaaa attttataaa cgtcaacaag tgcaaggtga       360
     aagcgtgcaa gactttgtgg cggctataag tctgcttggt gcaaagtgca atttcataga       420
     cttaaaacgc cagttgagag accgactagt actgggggtg cgggacgatc gcttgcgacg       480
     cgacttattg aaaaagaaag acttgaccta cgaggtcgcg ttacaaatgt gtctggacta       540
     tcaagtgacg ttccctgatt tgtaccctgc gtgtgtggct agtgagtcta agcaaactcc       600
     gtctagtgtc acagaggctg agccgatgga tattggtatt gttaaatcga acgagtgtcg       660
     gcggtgcgta cgtgcacacc ggccggggga gcgctgtccg tttgttaagg cgaaatgttt       720
     ctactgcaag aagtttgggc acattgcggc ggcctgctcc aagaagccag gtcgggaaca       780
     ccaggtcgac gatatgagag aagccaacgc gagtaacact tcgattgaga agatgatggg       840
     cgtatatgtc tgtgtagaaa attactcacc acctattacc acagacgtta tgatagacgg       900
     cgttcaaata tctatggaag tggactcggg tgcatctcgg accattatgt cggaagcgac       960
     atacaagagg ctttggtcga cgcccccttc cctccgggct accaatctaa agcttgtgac      1020
     atggactcaa gaccctttga aagtattagg gctagcagat gtgcgtgttg tgctagctaa      1080
     taaggaagca caatgtgaac tggttgtggt atccgggaat ggaccaaatc tgctgggaag      1140
     gaactggttc catgcactag gccttcaggt atcaggtttg tgctggactg aagaggagat      1200
     agaaccatac agaagagact ttcctgaact atttagagaa ggccttggcg agtacaaagg      1260
     tcctgaggtt aaacttcacg tacggcgcga agctacgccc cgtttcttaa aggcgcgcgt      1320
     tgtgccctac ccgcttagag aaaaagtaat tagacaattg aacgagatgg tgaaggcggg      1380
     tgtactgtca cctgttcgtt attctgagtg ggcgacgcca atcacgccgg taataaaaca      1440
     ggacaaaaca atacgtatat gtggcgatta tcgtgccacg gtgaacgccg ctatagatac      1500
     agacatctat ccgctaccga cgtctgtgga agcgtttgta agacttagtg gcggcagaat      1560
     atttagtaag ctggacttga aaaacgcgta cacacaattg aaggtagacg acgagacagc      1620
     gatgatgctc acgctgaaca ctccgatcgg cctaatgaaa gtgaatcgct tgccatttgg      1680
     tgtgagcgcg gcgccagcaa tttttcaacg cctaatgtca acagcgttag cgggtatgga      1740
     tggagtggcg tgtctgttag atgacattgc tgtcactgga gccacgatgg atgaacacaa      1800
     ccggagactg agagaagtgc tgaacaagct gcaacagatg ggactccgcc tgaacgtaaa      1860
     caaatgtgtg ttcgctgcga acagcattac attcctggga cacatgattg atgcagaagg      1920
     acttcaccca gcaccagcga aagtcaaaga gattcaagaa aagtcagccc caacgaacag      1980
     agagacctta cgtgccttcc tgggcttata taatttctat gaaaagttct tgcctgacaa      2040
     gagcacggtg ttggaaccac tatatcgact tttagaatca aaaagacctt ggaggtgggg      2100
     tgagaaggaa caagaagcat ttgtggaggc gaagcgatta ctctcttcag agcgaacatt      2160
     ggtaggctat gatttgcaaa aagaactact tctcatttgt gattcatcgg aatatggtct      2220
     cggagcgatt attgctcacg tcatggacga cggctctgag aggccggtga tgatggcctc      2280
     acggacactt cagccgcatg agagacgata tgggcagatt gataaagagg cccttgccat      2340
     tatatttgga gtgactaagt ttcacgaatt cttggcgggt cgcagatttt ctattgtgac      2400
     agatcataaa ccgttggtgg gtttatttaa ccctgcgaaa ccaattccag accagatttc      2460
     accgagaatg ttgcgctggt cattgaaact gtccagttat aattacagca tcaaatacag      2520
     gcctggtaag ttaatcggca acgcggacgc attgagcagg tggactgctc cggacacgtc      2580
     gagcgtgcag gaggaggtgc tgcgcgacgt gctgctgctg gaggagcagc cgagtggctg      2640
     ggagctggat gctagtaaga tagccgcgga gaccaataga gatttagtat tacaaaaagt      2700
     aatgtttcat gtattgcacg gatggccgcg aaggaacatg gacccgagcc tacaagctta      2760
     ttggacacgg agagaggctc tttcacataa taaaggttgt ttattgtgga gcaacagagt      2820
     cataatacct acgtccttac aggacaaagt gttaaagttg ttacatgacc ctcatgcggg      2880
     cattgtccaa acaaaagcgt atgcaagagg ttacgtgtgg tgggtcgaca tggatcggca      2940
     gattgagaga gtggtggcca actgtcagca atgtcagctt gtaagaaata acccaccaaa      3000
     agatccgcag acatggatag ttccagagaa gccgtggagc cgggtgcatg tggatttcgc      3060
     ggggcccttt caaggaaaaa cttttttagt actagtagac agctacagca aatggtttga      3120
     ggctgaaatc gtaccaggaa tgaatagtag tacggtgata gctgttctaa gaaaaatttt      3180
     cacatcacaa gggcttcccg aagtgttggt gtctgataat ggacgtgcat tcacctcgga      3240
     tgaatttaat aattttctga aaaggaatgg tattaaacat ttgtattcac cgccctatca      3300
     cccagagact aacgggcaaa ttgaacgcac gattcaaaca tttaaaaata aaatgaagaa      3360
     gttagggaat ttggacatgc agtggcaaga gagactgtgc aaagttttat attatttacg      3420
     gacgttacca aatagttcca cgaacaagac acctgccgag ctactgaatg ggcgaagata      3480
     caggacggcc gtgtcgagcc tacatcccga ctcgatgccg agccgcaccg agcagcaact      3540
     ggaggcggcg gcgcagcgcg cgccgacgcg gacttttacg ctgctgcagc ccgtgctaat      3600
     acgcatgtac gggcccggga acaagtggtg ccgggccacc gtggagacgg tagagggtcc      3660
     gaccacttat ttggtaagga cggaagatgg cgagctgcat cggcgacatg cagatcaaat      3720
     actggccaga tcgcaagaca cgtctgataa gggttcacct gtcattgaca gccagccagg      3780
     caacgagacg gattctgaac tatcacagga tccgccgatt gtgattccac cgcccgaatt      3840
     atggccggat gttgtaggaa ttcctaatga ttaagttaat ttatgttaga agtagatttt      3900
     atttgtaatt gaattaatta gtctttacca atcattatga gggaaaggta                 3950
//
ID   Gypsy-14_HeAr-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-119
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5592-5592 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 119 BP; 28 A; 16 C; 21 G; 54 T; 0 other;
     tgttatgttt gcacctcctt tgtgatttgt tttgttagat gtcaagaata atattttgta        60
     atgttggtat tcgaaataaa acagtttgct ttctgatctc gaccacgttg tatctttta        119
//
ID   Gypsy-14_Hmel_I repbase;    DNA;    INV; 5228 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy-14_Hmel_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-5228
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1183..3270
FT                 /product="Gypsy-14_Hmel_I_1p"
FT                 /translation="YIRTSSINSFREVNFHEQYQLRNRILNNSTAPRPTPN
FT                 VAGLSSTQNNLTPQQKFNFGIHTIRPQFTQQPKFEYKPQQTLLKPQPFGSR
FT                 PPQIPQFGYRPPQNPQFGYRPPQNPQFGYRPPQNPQFGYKHPQNPTMTPQQ
FT                 FGQRPPQNNRLESTDISMRTAPPRPQIAQQGFRLNETDLQNENLVYDYYYE
FT                 CDPYDYMNYEPYVEDVPYAPIDEIDNYIVTPPAEENFQTXXXXXXXXXXXX
FT                 XXXXXXXGIRVNATHSDDEKDSMIVHFDKKEKGLRQRNYSSTISISECSSR
FT                 EKPITLSDSETLSVPSSPRTCDYPVRSPSETSKTDTVHSANIVESSGIPIL
FT                 HEAIDTKPNQILVYTWFKNDIQVRDLSREKQKVLEVFLPTYNRDLVKQFLK
FT                 EYIKPKTKYFIYFENNEHRKQFTSIVIELFRKDTVLLFECTERVIFIENEK
FT                 EQKAIVLKHHQGKTCHRGIKETLASIRRNYFWHNMQETISAIINACETCCK
FT                 MKYDRKPFKPVLQLTQTQDAPFQELFIDLFQIEGNYYLTIIDAFSKLGQAI
FT                 SIDNRSTAEVVRALMKYFSFYGTPKKISSDPGSEFNNELMKEFLSLHKIEI
FT                 HIGSPNNSNSMGLIERLHSTINEIYRCAKYEEKCTDAASVMMYSIIAYNSS
FT                 IHSVTGLTPFEVVFGHTDSSSLFDIDLEKQYIQQLVKDHAKRLKVLY"
XX
SQ   Sequence 5228 BP; 1866 A; 838 C; 843 G; 1622 T; 59 other;
     gccggtagga tagtctatca aaggtctgcg tgtcttgtag atttgggtgt ccaaattcgc        60
     ccaaaaatcg cgagtacagt gcgaatagac ttaggctatc cacgaaccaa agaaataagt       120
     tgaacaagaa gatgggatca gcgatcggtc ggtgagtaaa actctttgcc ttcctttttc       180
     ttatattccc acattctatt tgagatttac aataaawata agtggcgtta ttttgggatt       240
     gaacgtctcg cattataacg tatctggttt taatataaaa ctctattaaa cctgtagttc       300
     taagaaaagt atctccatag actaattaac gtctagaagt aatattatta aaatatttka       360
     gtaattaaag aaaaatatat atatartaat taatgatcta aaaaatcgat cgtaattgtt       420
     tttatgtatt atgaaataaa ataaaaaaaa aaaaaataat tattatttta ttgtgtttta       480
     ttttcctact atttttatat ttttaattta ctgtgtgcta ttttatatac ataattgtta       540
     tatgtgtttt tgatatattt tatatttttg tgtgtgttaa attagttaaa aataattgta       600
     attgatttga aacttcagag ctctctatta atttttactc tacaaaatgg aacaatcgcg       660
     agaaattcct ttagcgtcaa atascgtagt accaataccc aatgaaatgt tacgactaat       720
     tcctcttttc ggtggcgaca aaagaatatt aaatttattt tttagaaaat gtgagtacat       780
     tataaataaa tttcgtggtc atcagcagca gaatatttat gttttacatg ctataactag       840
     tagattaawa gatgatgccg ccgcgttgtt atctgagcgt gaggatatag agacttggcc       900
     tgagttaaaa gaattattgg aacaacattt tggtgaccca cgtagcgaag aatgtataaa       960
     aatttctctc gaatcatgta aaattaaatc aggggaaagt tatttagagt tttgtaacag      1020
     aatacaaaat attcggtccc tgttaatatc taaagtaaat ttatcggcag atgaagaagt      1080
     taaaaatgcg aaaattgcta tttataacca cacagcctta aatgtttttc tctataattt      1140
     accagaaaat atggtgcgta ttgtgagact taaatcacct agtacattag aacaagctct      1200
     atcaatagtt ttagggaggt taattttcat gaacaatatc aacttcgtaa tcgcattctt      1260
     aataattcaa cggccccgag gccaacacct aacgtcgcag ggttgtcatc tacacaaaat      1320
     aatcttaccc ctcagcaaaa atttaatttt ggaatccata ctattagacc tcaatttaca      1380
     caacaaccaa aatttgaata taaaccgcag caaacattac taaagcctca accgttcggg      1440
     tctaggcctc cccaaattcc acaattcgga tataggcctc cccaaaatcc gcaattcggg      1500
     tataggcctc cccaaaatcc acaattcggg tataggccac cccaaaatcc gcaatttggg      1560
     tataagcatc cccaaaatcc tactatgaca ccacaacagt ttggtcaaag accacctcag      1620
     aataaccgct tagaatcaac tgacatatct atgagaacgg cacccccgcg acctcaaata      1680
     gcacaacaag gttttaggtt aaatgaaact gatttacaaa atgaaaattt ggtatacgac      1740
     tattactacg aatgtgatcc ttatgactat atgaattacg aaccgtatgt tgaggacgtg      1800
     ccttatgcac ctattgacga aatagacaat tatattgtaa ctccaccagc cgaggaaaat      1860
     tttcaaacag annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1920
     nnnnnaggaa ttagagtaaa tgccacacat tcagacgatg aaaaagactc tatgatagta      1980
     cattttgata agaaagagaa agggctacgg caacgcaatt actctagtac aatatctata      2040
     tcagaatgta gttctaggga aaaacctata accctttccg attccgaaac tttatcagtg      2100
     ccgagttcac ctaggacatg tgactatccg gttaggtcac cgtctgaaac atccaaaaca      2160
     gacacagttc attccgctaa tatcgtagaa tcgtcaggta taccaatatt acacgaagca      2220
     atagacacaa agccaaatca aattctagta tatacatggt ttaagaatga tatacaagtt      2280
     cgcgatcttt cacgtgaaaa gcaaaaggtg ttagaagtat ttttacccac ttataataga      2340
     gatttagtta aacaattttt aaaggagtat attaaaccaa aaaccaagta tttcatttat      2400
     tttgaaaata atgaacatcg gaaacagttt actagtattg tcatagaatt atttaggaag      2460
     gataccgttc tattattcga atgtacagag cgagtcattt ttatagaaaa tgaaaaagaa      2520
     caaaaagcta tcgtattaaa acatcaccaa ggtaaaacat gtcaccgcgg tattaaggaa      2580
     actctagcaa gtatacgtag gaattatttt tggcacaata tgcaagaaac catttcagcc      2640
     attattaacg cttgtgaaac atgctgtaaa atgaaatacg atagaaaacc ttttaaacct      2700
     gttttacagt tgactcagac acaagacgcc ccgtttcaag aattattcat tgatcttttt      2760
     cagatagaag gaaattacta tttgactatt atagatgcat ttagtaaatt gggtcaagcc      2820
     atttcaatag ataatagatc aaccgcggaa gtagttcgtg cacttatgaa atatttttca      2880
     ttctatggta cccctaaaaa gattagttcc gatcctggta gcgaatttaa taatgaatta      2940
     atgaaagaat ttttgagttt acataaaatc gaaatccata tcggctcccc taacaactct      3000
     aattcgatgg gattgattga gcgtttacat tctactatta atgaaattta tagatgcgcg      3060
     aaatatgaag agaaatgcac ggatgcagca tcagtgatga tgtattccat tattgcctat      3120
     aatagttcta tccattctgt cacaggtcta acccctttcg aagtagtatt tggtcatacg      3180
     gattcaagta gtttatttga tatagattta gagaagcaat acatacagca attggttaaa      3240
     gatcatgcaa aacgtttaaa agtattatat taacacttag ccgaaaaaat gattgaaatt      3300
     aagcagaagg taaaggaaag tagaggtggt gaagatgaaa tagatcttcc attaggaaaa      3360
     attatattta caaaagacgt taataaacgg aaaagcaagg ataaaccgcg atatcataag      3420
     gccaaaatta taggaaagga tttaaataat gttataccga tacaaattgg tcaaagaaaa      3480
     tctaaagttc ccgttaaaaa tataaaacgc cctccgcagg tggtgtttgc tgatactgat      3540
     gataatggga tctgtgctgg cccttcatct gcaatctctt gaaaataatc caggtgtgta      3600
     tcctgtaaaa gaaggtcagg cgtatcttca aacagattac tggactgtaa ttaaggtttt      3660
     aaatttaata tatgatgatt taaactttgt tataaataaa tacaatgaat ttaacaattt      3720
     aattaataaa aatatttctt acttacgtga tttccaagtt gcaagatttc acgttgaata      3780
     tattcgcgac atcaccgtac agaaatatga acagctagtt ccacaaaaac gtttcaagag      3840
     aggccttttc aatccattgg gttctcttat taaaattatt actgggaatt tagactataa      3900
     tgatgctgta agatatgaaa aaatcatttc tcagctcgca aaggatcaaa ctacaatgag      3960
     gaacaaattt actttaatat ctaaaatgct tgatagtttt ataaatacta ctgaagtttt      4020
     gaatcaaaat tcttttgtat taaatgagcg tttgaaaatt gttgaatcta tgatcaagga      4080
     gttagtttct aaggataatc atttagtgta tactacatat atagtaagtc tttttaattt      4140
     gttcgtaagt aactttcgta ctatattcat taagctagga gaaatagaga ctgcattagc      4200
     tttcagtaaa atatccatat tacatcaaag tattattaat tctactgaac tattacaaca      4260
     tttagtttta atatctcaaa ctgaaaattt attatatacg ccgagtgcgg aaaatttggt      4320
     aaaattagag gaaacaatca atattaaatc atatattaag caaaaccaga ttacgtttat      4380
     aatggagatt ccaattacag ataacattac ttataattat tataaattat attccttacc      4440
     tatttttcgt aaatcagaaa ataaaacatt ttccattatc cctaaatatc cctacctctt      4500
     ggcaaagggt acgaaataca taccgatcct aaaaccatgc cggtcacttg ctgctggaaa      4560
     acaattcttg tgtaacgaag atcatcaaac tctttatcct gagataactt gtattgagca      4620
     gctcttaaaa ttcgaagata acttaacaca atgtgagcaa agagagattg acataaagaa      4680
     tataagggtc caaagaatca catctacaag ttggatacta ttttcaaaat ttagaaacac      4740
     cctaactcaa acctgtaatg gggatgtcaa taagtattct attattggca cttatgttat      4800
     gaccttagac gaaccatgta atgttgaggt aaagaatata aagattcgta gtcatgtcaa      4860
     cctcatagag agtgatcctg tgggaaccaa gcaagattta gttttgccac agctgcctat      4920
     ggctagagcc cctgtattat ccagtacacg cgtactcaat atgagaggaa tcaatttgga      4980
     tgaagtaaaa tatatgtcag cggtactata gcaaagtgtt ttcagtgata gtgaaatcat      5040
     taatagtgaa agacatccta gagtcagtga aattttaatt tacatcttta tatttttatt      5100
     tcttttatgt atactctcat ttttacttta tgtttttcgt tgtaaaatct tacatataaa      5160
     ttgttcgcga aatcatcgga aagttattaa aaatgaacaa cccgataatt tcgcacttgg      5220
     ggagggag                                                               5228
//
ID   Gypsy-14_Hmel_LTR repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy-14_Hmel_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-293
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 293 BP; 98 A; 45 C; 41 G; 107 T; 2 other;
     tagttatgca ctcacccaaa ccctcagtat taggttaagc gagattattc cgctggctca        60
     gcgagaccac cggagtattc ccagtattgt tataagcact tttattgttt cgtaaaawta       120
     catgttaaat gtcgcaatac attataactt ttgtaataca aatatttttt aackttaaga       180
     attaattatt gttgtgatct ccaaatcgat cagacgtatt aaatagtttt aatttaaatt       240
     agtattttat ttttaaaaaa gtaaattctc aattagaaag tttaactggc gca              293
//
ID   Gypsy-14_LH-I repbase;    DNA;    INV; 4474 BP.
XX
AC   ADOQ01010431;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_LH_;
KW   Gypsy-14_LH-LTR; Gypsy-14_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4474
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010431; Positions     678    5151.
XX
CC   Positions [3548-4027] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..1192
FT                 /product="Gypsy-14_LH-I_1p"
FT                 /translation="MEKLKFEFTMKGKKGDERTSMLCLTSISTLEGETFAL
FT                 PEDFQDINLHTKLAKTDTFRKVKKSITKRHQKRNVWIVLNKPLKEIYVDDG
FT                 GNIQFADLLLEEKFEDPQPTEQASTTGGISKEDLQTIREKFSATERNQKKN
FT                 LNKLAEKFVLDKFNNKTNNATQWMEFFESECERLNLQKDEEKIEILRLFLE
FT                 GSGTDWYSSMLMKLTIDSEWTNWKVNFCETYADKEWSPVKYAINFKYMSGP
FT                 LLDYALKKEKLLLEMDKSTNPNILINLIATGLPDFVTDRINKTDMKETKDL
FT                 FNEIRSLEHLVKNNASDKKKNTSMNSKEKQEKRKPCKICEKLGKKNRYHPE
FT                 DSCWFKTKQTKEENQIKLINNAQLECELQDDNNSKN"
FT   CDS           2741..4405
FT                 /product="Gypsy-14_LH-I_2p"
FT                 /translation="MKQILCTQPVLTIFDPNRPIHIYTDACLLGVGAVLKQ
FT                 PQEDGIEKPVAFFLKKLNETQKKKKAIYLECLAVKESVRYWQHLLIGRKFK
FT                 ILSDHKPLENLNIKSRTDEELGDLTYYLSQYDLEIKYEPGKYNFEADCLSR
FT                 NPVLDPDESTDEQLKVVNVITLEDILKDQEGNEKVQRTKEKLIPRKNIFFK
FT                 KMKKTEKIILTEEFSIKFLKKIHENLYHIGIQQMKKNIYPYYTANNLIKNI
FT                 EKICKSCTICIKNKTKGQPKYGLMSYLGPATKPFGIMSLDTVGAFGGSRST
FT                 KKYLHLLVDHFTRHAYILTSKTQNAADFIKLINGIAETEEVNMLLSDQYPG
FT                 INSKEFKRFLDDKNIPIIFTAVDSPFSNGINKRLNQTLVNKIRCKINENGK
FT                 KMAWTTVARECVQKYNETKHSVTGFAPSYLMNGTNVSILPQELRKKITEQD
FT                 WIRDKETALKNSIRSHEYNKKIYDKNRKCLNLNVGDRVFVENGNRLNRRKL
FT                 DELKIGPYVIIEKISNSIFKVNTDHKKTESNLFHISKLIPLPTLEEKNKNT
FT                 DKEDGNED"
XX
SQ   Sequence 4474 BP; 1921 A; 750 C; 758 G; 1045 T; 0 other;
     aaatacctta taaaacgaca tttaatggaa aaaatccttg tcagatgttg tcaagatgga        60
     aaaattgaaa tttgaattca ccatgaaagg gaaaaaagga gatgagagaa caagcatgct       120
     gtgcctaacc tcaatcagca cacttgaagg tgagaccttt gctttgccag aagattttca       180
     agatataaac ctgcacacta aactagcaaa aacagacact tttagaaaag taaaaaaatc       240
     gattacaaaa aggcaccaaa aaagaaacgt ttggattgtc ctaaataaac cattaaaaga       300
     aatttatgtt gatgatggtg gaaatatcca atttgcggac cttctattag aagaaaaatt       360
     tgaagatcca cagcctacag aacaagcaag caccacaggt ggcatctcaa aggaagatct       420
     acaaacgatt cgagaaaaat tttctgcaac agaaagaaac caaaaaaaga acttaaataa       480
     actagcagaa aaatttgtac tagacaaatt taataacaaa accaacaatg ccacgcaatg       540
     gatggagttt tttgaaagtg aatgcgaacg gttaaaccta caaaaagacg aggaaaaaat       600
     agaaatttta agattatttt tggaaggctc aggtacagat tggtacagct caatgcttat       660
     gaaactcaca attgattcag aatggacaaa ctggaaagta aatttctgtg agacttatgc       720
     agataaggaa tggtcaccgg taaagtatgc aatcaacttt aaatatatga gtggaccatt       780
     gctagactac gctctaaaaa aagaaaaatt gctattggaa atggataagt ctacaaatcc       840
     aaacatactg ataaacctaa ttgcaacagg attaccagac tttgtgaccg acagaattaa       900
     taaaactgat atgaaggaaa cgaaagatct gttcaatgaa atcagaagtt tggaacactt       960
     agtgaaaaat aatgcgtctg ataagaagaa aaatacatct atgaattcaa aggagaaaca      1020
     agaaaagagg aaaccatgca aaatatgcga aaaattagga aagaagaata gatatcaccc      1080
     cgaggattca tgctggttta aaacgaaaca aactaaagag gaaaaccaaa taaaacttat      1140
     caacaacgca caactggaat gtgaattaca agatgataat aattcaaaaa actagttgtg      1200
     ccgccattaa taaaaataaa attggtattg aatggtgatc ttgaaatatt tggagtttat      1260
     gattccggct caaacgtttc actaataaat tcaaaattat taagaatcaa taataaagaa      1320
     ccaggtatct ttaacagtac caatttgaaa actattaatg gcgttaaaaa aacaagtggt      1380
     atggtaactc taaatgcaaa aattttcaac attgaaaaac aaatcaacgt ctttgtgata      1440
     gatgaaaaaa attttgatta cgatttccta ataggactag actgcataaa ggaatttcaa      1500
     ttaaatcaag ataaaaacct aagaatcagt caaaaaatcc aaaacaaaac aaataatagt      1560
     atttctaaag aaataaaaat caatgaacta aaaagtaaga ctactacaga gaataaaggg      1620
     aaaatgacgg ttgagaacat gaataataat gactcaaaaa acaatcatag tcccagtaaa      1680
     atcagaaaaa atcaaatagc tgaagattcc acaaatctgg taaacttcaa tgaacacatt      1740
     ggagaaaaaa actttagcat tttgataaat cacttagatt atgaaaaaca agctaaaata      1800
     aatgacttaa tgatcaaaaa tgcaactatc tttgcaaaag acaaatatga tatcggcatg      1860
     acaactgact acgaagcaca tatagaccta ttagtcgaaa aatattgcag caagaggccg      1920
     taccgatgca cattcgaaga cagaaaagag atcgagtcac aaattgctaa gctactggaa      1980
     aagaactaat agaggaatcg tacagtccgt tcgctgctcc agtaacctta gcgttcaaga      2040
     gagaagaaaa taaaaaatct agattgtgca tagattttcg agagttaaat aaaatcgtgg      2100
     tgccccaatc acaaccgttt ccactcattg aagatcttat ggtaaaaaca agggattgta      2160
     ctttttttcg aagctagaca tgaactcagc gttttggtcg atatcattaa aaatttcaga      2220
     cagacataaa acagcgtttg tcacgcaaga aggacacttc cagtggacct gtttaccatt      2280
     tggtctaaaa acagcgccag caatattcca aagaataatg ggcaatataa taagaaaaca      2340
     caaattggca gacttcacga ttagttacat agacgacata ctaatattct caaaattatt      2400
     cgaagatcat atcaaacact tgacacagct attccatgct attaaaatag aaggtttttg      2460
     actgaaattc tcaaagtgca gttttgttga gaattcagta aaatacttag gccacatatt      2520
     acaaaataat tcagtaagac cactaaaaga caacttgatt gcaataaaaa actttccaac      2580
     acctaagaca cagaaaaatg tgagacaatt cttgggaaaa ataaattttt accacaaata      2640
     tgtgcctaaa atagctataa aattagaacc attacacaac ctattaagaa aaaataaaga      2700
     attcaagtgg actgaagaat gtcaaagatc ttttgacgaa atgaaacaaa tattgtgcac      2760
     tcaacccgta ctgacgattt tcgacccaaa tcggccaata cacatttata cagatgcctg      2820
     cctactagga gtcggagcgg tactaaaaca gccacaagaa gatggaatag agaaaccagt      2880
     ggcattcttc ttaaaaaaac tgaacgaaac tcaaaaaaag aaaaaagcca tatacttgga      2940
     atgcctggca gtgaaagaaa gtgtacgata ctggcaacac ttattaatag gaagaaaatt      3000
     caaaatcctt tcagatcaca aaccattaga aaatttaaat ataaagtcaa gaactgatga      3060
     ggaacttggg gacttgacgt attacctgtc ccagtatgat cttgagatta aatatgaacc      3120
     aggaaaatat aactttgagg cagactgcct cagcagaaat cctgttctag acccggatga      3180
     aagcacggat gaacagttaa aagttgtaaa tgtaataaca ctggaggata ttttgaagga      3240
     tcaagaaggg aatgaaaagg tacaaaggac aaaggagaag ctaataccga gaaaaaacat      3300
     tttctttaaa aaaatgaaaa aaacagaaaa aataatattg acagaagagt ttagcatcaa      3360
     attcttaaaa aaaattcatg aaaacctcta tcacataggc atccaacaaa tgaaaaagaa      3420
     tatatacccg tattacacgg caaataatct aatcaaaaat atcgaaaaga tatgtaaaag      3480
     ctgcacaatt tgcataaaaa acaaaacaaa agggcaacca aaatatggct taatgtcata      3540
     tttaggccca gccacaaaac ctttcggaat catgtcatta gacactgtag gagcttttgg      3600
     cggttccaga tctacaaaga aataccttca cctactggta gatcatttca caaggcatgc      3660
     ctacatcctg acgtccaaga cgcaaaacgc agccgatttc attaaactaa taaacggcat      3720
     cgccgaaacc gaagaagtta atatgctttt atcggaccaa tacccaggaa taaactcaaa      3780
     ggaattcaaa agattcctgg atgataaaaa tataccaata atattcacag cagtagattc      3840
     tcctttctct aacggaataa acaaacgact aaatcaaaca ctagtcaata aaattagatg      3900
     taaaatcaat gaaaacggga aaaagatggc ttggacaacg gtagcacgcg aatgtgtaca      3960
     aaaatataac gagacaaaac atagtgtcac tggattcgca ccatcttacc tgatgaatgg      4020
     tacaaacgtc tcaatattac cacaggaact gaggaagaaa atcaccgaac aagattggat      4080
     cagagacaag gaaaccgctc taaaaaattc aataagatca catgaatata acaagaaaat      4140
     ctacgacaaa aaccgaaaat gcctaaacct caacgtggga gacagagtat tcgtagaaaa      4200
     cggaaacagg ctaaatagaa gaaaacttga cgagctgaaa attggaccgt acgtaatcat      4260
     agaaaaaatt tcaaattcaa ttttcaaagt aaacacggat cacaaaaaaa cagagtcaaa      4320
     ccttttccat atatcgaagc tgattccact cccaacgctt gaagagaaaa ataaaaacac      4380
     cgacaaggaa gacggaaatg aagactaaat catctacgaa tattgtaaag tattgcaaga      4440
     aaaatgtaaa cattttctcc cgcgagagag gtga                                  4474
//
ID   Gypsy-14_LH-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   ADOQ01010431;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_LH_;
KW   Gypsy-14_LH-I; Gypsy-14_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-344
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010431; Positions     334     677.
XX
SQ   Sequence 344 BP; 109 A; 72 C; 61 G; 102 T; 0 other;
     tgtaaagaaa atatattttc ttcaaccatt cccgcgctct ctcgagcgtc ggtgtagtag        60
     atcgcaacat gcacggctta tcatacgacg cggattgaca cacgtggagc atcgttaaag       120
     tgaagttaac ctaaagactc tactgtgttc aattaacaga tctaaacacc tgtgattagg       180
     agtgattgac gcgacggtct acggacatta aatgtcgttt cttttattac aggtgagacc       240
     ttgtaaatac caagctaaaa acttgtaaat aataaaatac tacttttatt acagaaactc       300
     aattaagttc tgattgttga tgtcatacct ccccctaatc acca                        344
//
ID   Gypsy-14_LMi-I repbase;    DNA;    INV; 4294 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4294
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3385-3385 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1111
FT                 /product="Gypsy-14_LMi-I_1p"
FT                 /translation="MCSLLTSYYKKQTHVVASRVAFYQCKKQPHQSYRAWA
FT                 TELQGISRKCKFITTVHKESYADSMVRDAILRSAPDKEVRQKALQLNDPSL
FT                 SEVLAIAESFEITRAAGAQLDAWGDVGEVTADRAFVDAPGSVVNEEVAAVY
FT                 SRTQPKQSKQRTSSKQKQSLAALPSCPRCFSQHSRDDCPQRWATCHKCKKK
FT                 GHISSVCRSNQVQAIHGSILYVNSTNSSGNKLYLRCRCLEKTYRCK"
FT   CDS           join(1084..1488,1508..1888,1782..2057,2110..2889,
FT                 2813..3544,3301..4197)
FT                 /product="Gypsy-14_LMi-I_2p"
FT                 /translation="MFGKDVQMQIDTGSAATIITSQTYLRLGSPPLSPVLR
FT                 RLRTYNQQQLSLLGQMDVQITYKSVVRTVTVYVVDHMGTADLFGYDAFCTF
FT                 GFSVDDTVNVVSDNIPYTNYRLFALFSALGVPQLLSHVSLKPGARLFHCAT
FT                 CKTGVRWLTTSGVLLPVPSSEWASPLSLSANLTAVSGFAATLRLPSTLSVL
FT                 LILILCLDRKNCFPNLPEENTFRKSTSLRLIISYHLTSHRSISCSQYAFWP
FT                 LSLPTVAIWRGQCASHISKVSRVIGQFLVLNTPFGLYHYQRLPFGVASAPA
FT                 IFQRFLEQLLISVPGCINYQDDIVVTGATTDEHLKNLRTLFSSYNRLVLSA
FT                 IFTNLNSFSPLQHCRDRRPSASFVVKELQAFLGNIAYYHKFIPSVAEISYP
FT                 LTRLLKKNVPFTWSDECDAAFHRLKAHLQKAPCLATYCPGQQLVLATDASQ
FT                 HGIGAVLSHKYPDGTERPIAYASKTLNDSQLRYSQIEKEALAIVYALKKFG
FT                 VFLYGNKFHLITDHKPLVSLFHPSASIPDKAAHRLQRWALFLSRFQYDIHF
FT                 RPTLSMQMLMPYPDFLWALTPSSTKMSFFVFIWMRLRRLSLRASPSRDNAW
FT                 RQPPPRILFYTGFYITGLPHHGTTPGGSHRRGSCSTPGSTSHRKRLAGPSF
FT                 WKSVGSPPELLPSAAAPLLPQWSYPAGYRQRLSPVVVPATLRPAVLRLLHQ
FT                 GHWGVSRMKNLARRHVYWPGLDAEIAHMVAACQTCAAQAPAPKSSLSPWPT
FT                 PEKPWDRIHIDFAGPFLNTYWLLVIDAYSNFPFVLRQPQLLPPRLWPKSLP
FT                 WKVYPLPLFLIMGLNSPPPNFLTFVPRGAYPISPHHRSTPSPTGKWNVWSV
FT                 PLNPKRLFQFSFCASPTTAATTTALAKIFALEGLPTTIVSDNGPQFTSSEF
FT                 SDFCAQRGISHITAPPFHPQSNGEVERLVRTFKSQMKKHLTSSSTDDALLQ
FT                 FLASYRFTPSGDHSPAELLHGRQPRTLLHLLTPPPSKGTISTQGRIAEGAP
FT                 VWVRGYGKQPKWSQGHVVARKGRRLYTVSTPAGEVSRHIDQLRPRVTTVPV
FT                 PPIKDLKMDVDTDLPTTRNQADTSDILVDWTPPQQMEQDNHEATDTQMSPS
FT                 SLRLSHMHHHAPHHPCHPSSHHEPEQDIIGHMGRCLLDHSQTVTKKRWT"
XX
SQ   Sequence 4294 BP; 1045 A; 1200 C; 910 G; 1139 T; 0 other;
     tttggcgacg agtagggatt ttttgcaatt attaagttac aaacaacatt cgagatgtca        60
     acgctcgagc aaattctgca aatcctcgtc gaacagcaaa agttgctggc cgaccacctc       120
     accgaacatc agaagttcgt cacaacggct ctacaacagc tcctcacggc aacacacaag       180
     atcgcacatc gacgttgtcc atacccactt ttccgccata cgaggagacc gcagaagatt       240
     ggaggactat gagaagcggc ttcgacaaca cttcgtagct ttcggcgttg ttgatgcaaa       300
     tctctgtaag tcactgtttc tttcatggat ctctccaaag ttctaccaac ttttgtctca       360
     attagcgccc ctcaaagaac cctcttcact gtcatttgac gaaatgtgct cgcttctcac       420
     ttcatattat aagaagcaaa cacacgtcgt tgcatcacgt gtagcatttt atcagtgtaa       480
     aaaacagccc catcaatcat accgagcatg ggctacagaa ctgcaaggca ttagtagaaa       540
     gtgcaaattc attactactg ttcataaaga atcttacgcc gattcaatgg tcagggatgc       600
     aattttgagg tccgctcccg ataaggaagt tcgtcagaag gctcttcaat taaatgaccc       660
     atccttatct gaagtattgg ccatagcaga gtcttttgaa attactcgcg ctgcaggtgc       720
     gcaattggat gcttggggtg acgtagggga agtcacggca gatagggcat ttgttgatgc       780
     gccaggcagt gtcgtgaacg aggaagtagc ggcggtgtac tctcgcacgc aacccaagca       840
     aagcaagcag cgcactagtt ctaaacagaa gcaatctctt gctgccttac cttcttgtcc       900
     ccgctgtttt tcccagcatt cacgagatga ttgtccccaa cgttgggcta catgtcacaa       960
     atgtaagaaa aagggtcaca tctcttctgt ttgccgatct aaccaagtgc aggctataca      1020
     cggctccata ctatatgtca actccacaaa ctcttctgga aacaaacttt acctcaggtg      1080
     cagatgtttg gaaaagacgt acagatgcaa atagatactg gctcggcagc cacaataatt      1140
     acgtcacaaa cttatcttcg cctgggttca ccgccccttt caccggtctt gcgccgttta      1200
     cgcacataca atcagcaaca actctccctt ttgggacaaa tggatgtcca aatcacatat      1260
     aagtctgttg tacgaacggt cactgtgtat gttgttgacc acatggggac ggctgacttg      1320
     ttcggctatg atgccttctg cacatttgga ttctctgtcg acgatactgt caatgttgta      1380
     tcagacaaca ttccttacac taattacaga ctttttgctc ttttttcggc cttgggtgtg      1440
     ccacagcttt tgagtcatgt ctctctcaaa ccgggagcca ggcttttttg agcccccctt      1500
     cctgtagcat tgcgcgacct gtaaaacggg agttagatgg cttacgacct caggagtttt      1560
     gcttcctgtt ccttccagcg aatgggcctc tccgttgtca ttgtcagcaa acctaacggc      1620
     agtctcaggc tttgcggcga ctttaagact gccgtcaacg ctcagtgtct tattgatact      1680
     tatcctatgc ctcgaccgga agaattgttt tccaaacttg ccggaggaaa atacttttcg      1740
     aaaatcgacc tctctgaggc ttatcatcag ttaccacttg acgagtcatc ggtcaatttc      1800
     ttgttctcaa tacgcctttt ggcctttatc attaccaacg gttgccattt ggcgtggcca      1860
     gtgcgccagc catatttcaa aggtttcttg aacaacttct tatctctgtt cccggatgca      1920
     ttaactatca ggacgacatt gtcgttaccg gggctaccac ggatgaacat ctcaaaaatc      1980
     tacgtactct tttctcgtcc tacaacaggc tggtcttaag tgcaattttc acaaatctca      2040
     attctttcag ccctctatag tgtacctggg ttttcacctt tccaaggatg gcatctgtcc      2100
     ccttcgtgac aacattgccg cgatcgacgc ccttccgcgt ccttcgtcgt caaagaactg      2160
     caagcttttc tcgggaacat agcatactat cacaagttta ttccctccgt agcggagatc      2220
     tcttacccac tcactcgctt gctcaagaaa aatgttcctt ttacgtggtc tgacgaatgt      2280
     gatgctgctt ttcaccgcct taaagctcat ctccaaaaag caccttgttt ggccacttac      2340
     tgccctgggc aacagcttgt tttagctact gatgcgtcac aacatggtat tggtgctgtt      2400
     ttatctcaca aatatcctga tggtacagaa cgtcctattg cttatgcctc caaaacctta      2460
     aatgactcgc agttgcggta ttcacaaatt gaaaaagagg ctcttgccat tgtttatgct      2520
     ctcaagaagt ttggtgtctt tctctatggt aataagttcc atcttattac ggaccacaag      2580
     ccattggtct ctttatttca tccgtctgct tccattcctg acaaggcggc acacaggctc      2640
     caacggtggg cactttttct ctctcgtttt caatatgaca ttcattttcg tcccacgctc      2700
     agcatgcaaa tgctgatgcc ttatccagac ttcctatggg ccctgacccc gtcttcgaca      2760
     aagatgagct tctttgtttt catttggatg aggctgcgca gactgtcgtt gagggcttcc      2820
     ccatcacggg acaacgcctg gcggcagcca ccgccgagga tcctgttcta caccgggttc      2880
     tacatcacat agaaaacggc tggccggacc gtccttctgg aaaagcgtcg gatcccctcc      2940
     ggaactactt ccatctgcgg ctgcgcctct cctccctcaa tggagttatc ctgctggcta      3000
     ccgacagcgt ctctccccgg ttgtcgttcc ggcaacgttg cggcctgcgg tcctacgtct      3060
     tctacaccag ggacactggg gcgtctctag gatgaagaat ctcgctagac ggcacgtcta      3120
     ctggcccgga ctcgacgcgg aaattgcaca catggtggcc gcttgtcaga catgtgcggc      3180
     gcaagcacct gcgcccaagt cctcgctttc tccatggccc acacctgaaa agccatggga      3240
     ccgcattcat atagatttcg ctggaccctt cctcaacact tattggctcc tagtcattga      3300
     cgcctattcc aattttcctt ttgtgcttcg ccaaccacag ctgctaccac cacggctttg      3360
     gccaaaatct ttgccctgga aggtttaccc actaccattg tttctgataa tgggcctcaa      3420
     ttcacctcct ccgaattttc tgacttttgt gcccagaggg gcatatccca tatcaccgca      3480
     ccaccgttcc acccccagtc caacggggaa gtggaacgtt tggtccgtac ctttaaatcc      3540
     caaatgaaga aacatctcac atcctcttcc actgatgacg cactcctgca attcctagca      3600
     tcatatcgct tcactccgtc cggggaccat agcccggcag agcttttgca tggacgccaa      3660
     cctcgtactc tcctccacct cctcacaccc ccgccttcta aaggcactat cagcactcaa      3720
     ggaagaattg cggagggcgc tcctgtgtgg gtgcgaggct acggaaagca accaaaatgg      3780
     tcacaaggcc atgttgtcgc acggaagggc cggcggttgt acaccgtcag cactcctgcg      3840
     ggggaggtgt ctcgccacat cgaccaactt cgcccaagag tcaccacagt accggtaccg      3900
     cccatcaagg acttgaagat ggatgtggac acggaccttc ctacaacgag aaatcaagct      3960
     gacacttctg acatcctagt ggattggaca ccaccacaac agatggaaca agacaaccat      4020
     gaagccaccg atacgcagat gtctccgtct tccctacgtc tttcacatat gcaccatcac      4080
     gcacctcacc acccatgtca cccatcatct catcacgagc ccgaacagga cattatcggc      4140
     catatgggaa ggtgcctact agatcattcg caaacagtga cgaagaaaag atggacgtag      4200
     gcttactaca acaagtgagt gaaaaacaaa aaggggggag aaatgttgta tatcaagtgc      4260
     gtgaattcaa atgttctgcc gcgcccgttg gcgc                                  4294
//
ID   Gypsy-14_LMi-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-168
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3386-3386 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 168 BP; 38 A; 31 C; 51 G; 48 T; 0 other;
     tgcggtacga gtgtgaaagt tcgcgagcgc cacctggcca gctggtggcg gaaggactga        60
     aagcagtatg ggaaggcagt tcacattcag actcgtaagt gtgatgtcct attctcatct       120
     tgatagtgtc atgcgtgttg attattgagt gttcgtgttg ttacaaca                    168
//
ID   Gypsy-14_MeUr-I repbase;    DNA;    INV; 3969 BP.
XX
AC   .
XX
DT   25-MAY-2021 (Rel. 26.06, Created)
DT   25-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-3969
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3048-3048 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..869
FT                 /product="Gypsy-14_MeUr-I_1p"
FT                 /translation="MEKFEDASAMETQFVDRVGVRIPPFWANDPSLWFAQI
FT                 EGQFMLANITSDTTKFYYVTSQLDHQYAVEVKDIISSPPETGKYEKLKSEL
FT                 IRRLSVSKNKKVQQLLMHEEIGDRKPSQFLRHLQNLAGSSVPDDFMRSLWS
FT                 VRLPLSIQTVIASHPDMSLTKIAELADQIYEIAPPNLQVASSHSVPTPSTS
FT                 MQATIEFMAKQISDLTREVAELKLSRIPRSHSRSRSRPRYRNRSRSRTRPT
FT                 QQPPNHPHCWYHYTYGSHAKKCVRPCTYRESENSEGSRK"
FT   CDS           839..3946
FT                 /product="Gypsy-14_MeUr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GVGKLRGQPEIAANHCPLSTGRLFITDRNSKMLFLVD
FT                 TGSDLCVFPRSAYKAPCTKSNFDLVAANGTVIHTYGPVHLDLDLGLKRSFK
FT                 WKFVIANVTRPIIGVDFLTYYNLLVDCRNQRLVDGTTSMTVPTPRMKIPED
FT                 VASIKAVFGDSLYHEILRDFPEVTRPAGIMIAPRHNTVHFIRTTPGPPVTC
FT                 RPRRLDPVRLKAAKKEFEGMISSGTARPSESPWSSALHLVTKKDDGWRPCG
FT                 DYRALNARTIPDRYPIRHIQDFSSQLSGCTIFSKIDLVKAYNQIPINPDDI
FT                 PKTAITTPFGLFEFPYMTFGLRNAAQTFQRFMDEILRGFDGFCYGYLDDIL
FT                 VFSSSEEEHRRHLRELFARLKEYGVLINSAKCDFGKSEIQFLGYFVSAEGT
FT                 KPMTNKIQAVNDFAMPKTIKELRRFLGMINFYRRFIPDAAQIQAPLNSCLA
FT                 GPKVKGAQAVHMTPEMMDAFQRCKDSLAQATQLAHPDPSAELAIATDASDV
FT                 GIGAVLQQRKNTVWQPLAFFSHKLTPSQKKYSPYDRELLAIYEAVKYFRPM
FT                 VEARNFVIYTDHKPLTFAFAKNREKCTPRQFRYLDYISQFTTSILYISGRD
FT                 NVVADSLSRIEEVSIAIDFQQLAQYQKSDAELQNLLKQGSSLRLEKIRIPE
FT                 STTELYCDTSTSSPRPFITSSYRRQVFDSLHSLSHPGAAATVRLVTQRFVW
FT                 PGIRKDCRQWSRECIHCQRSKIYRHTLAPFSPILTPTSRFSHIHLDIIGPL
FT                 PVSLDYRYCLTIIDRFTRWPEAIPLKDITAETCASALVSGWLGRFGCPHKI
FT                 TTDRGRQFESHLFNALSSMVGAKHFRTTAYHPSSNGMIERLHRQLKAAIMC
FT                 HNSSNWTETLPFVLLGIRSAWKEDLKASSAELVYGEPLRLPGQFIAPSIDH
FT                 TTEDPTALVTRLRAGLANLTPKPASWHRNGPFYIPHDLKDATHVFLRQDYI
FT                 RRPLEPPYSGPHKVLERNPKYYKVEVSGKPVTVTIDRLKPAYLTREVGTPV
FT                 TVPAKSTSDDTKRRTRSGRRVRFPDYFRSQ"
XX
SQ   Sequence 3969 BP; 1117 A; 1026 C; 836 G; 988 T; 2 other;
     actggtgacc accgactgaa gcacgcaaga tggaaaagtt tgaagatgca tctgctatgg        60
     agactcagtt cgtggaccga gtcggagtac gaatcccgcc attttgggcc aatgatccca       120
     gtctttggtt tgctcaaatt gaaggtcaat ttatgttagc gaatataaca agcgatacca       180
     ccaaattcta ttatgtcact tcacaactcg atcaccaata tgcggttgag gtaaaggaca       240
     taatttcttc gccaccggaa acaggcaagt acgaaaagct taaaagtgag ttaatacgac       300
     gtctatccgt gtcgaagaat aaaaaagtgc aacaattact catgcatgag gagataggcg       360
     atcgtaaacc atcacaattt ttacgacact tacaaaatct tgcaggttcg tctgtgccgg       420
     atgattttat gcgaagttta tggtcggtcc gtttaccgct cagtatmcaa acggttatag       480
     cctcgcaccc ggacatgtct cttactaaga tagccgaact cgctgatcaa atttatgaga       540
     ttgctccacc gaatttgcaa gtagcaagta gtcattcagt accaactcct tcgacatcca       600
     tgcaggctac catagaattt atggctaaac aaattagtga cctaacacgc gaagttgctg       660
     aactwaagct gagtagaata ccgcggtctc attcacgatc acgatcacgg ccaagatata       720
     ggaatcgctc ccggagtcgc acgcgaccga cacaacagcc acctaaccat ccacattgtt       780
     ggtaccacta cacatatggg tcccatgcaa aaaaatgtgt aagaccttgt acgtataggg       840
     agtcggaaaa ctcagagggc agccggaaat agcggccaac cactgcccct tatctacagg       900
     ccgcctgttt attactgacc gtaattcgaa aatgctgttc cttgtggata ctggatccga       960
     cttgtgtgtt ttcccacgat cagcttacaa ggcgccctgt accaaatcca atttcgacct      1020
     ggtagctgca aatggcaccg taatacacac gtacggtcct gttcatctgg atttggattt      1080
     aggactcaaa cggtctttca aatggaaatt tgtaattgcc aacgtcacga gacctataat      1140
     tggagtcgat tttttaacat attacaatct tctcgtagat tgcagaaatc aacggcttgt      1200
     ggacggcacg acttctatga ctgtgcctac accacgcatg aagattcctg aagatgtggc      1260
     atccattaag gctgtgttcg gcgatagctt atatcacgaa atcctccggg atttccccga      1320
     ggtcactcgt cccgcaggta tcatgatagc acccaggcac aacacagtgc acttcatccg      1380
     aaccacacca ggacctccag tcacttgcag accaagacgt ctagaccctg ttcgcttgaa      1440
     agctgccaag aaggaatttg aaggtatgat atctagtggt acagctcgcc cttcggaaag      1500
     tccatggtca tctgcacttc acttggtcac taagaaggac gacggatgga gaccatgcgg      1560
     cgactacaga gctctcaacg cgcgtactat tcctgacaga tatccaattc gccatattca      1620
     ggacttttcg tctcagttat cgggatgcac gatattctcc aaaatagact tggttaaggc      1680
     atataatcaa ataccgatca acccagacga catacccaaa actgcaataa ccactccctt      1740
     cggcctattt gagttcccgt acatgacctt tggacttcgg aacgcagcac aaacatttca      1800
     gcgattcatg gatgagatcc tgcgcggctt cgatgggttt tgttatggtt atcttgacga      1860
     tatcctagta ttttcatcgt cggaggaaga acatagacgt cacctacgcg aactatttgc      1920
     ccgccttaag gagtacggcg tgctcatcaa ctccgccaaa tgcgactttg gtaaatcaga      1980
     gatacagttt cttggatact ttgtctcggc agagggaact aaacctatga ccaacaagat      2040
     tcaagccgtc aacgatttcg ctatgcctaa aactatcaag gaactgcgta gattcctcgg      2100
     tatgataaac ttctatcgtc gcttcatacc cgacgcagct caaatacaag ctccactaaa      2160
     ctcttgtctc gctggcccca aagtcaaagg agcacaagca gtccatatga cacccgaaat      2220
     gatggacgca tttcagcgtt gtaaggactc tctcgctcag gctactcaac tagcacaccc      2280
     agatccatca gccgagttag ccatcgcaac ggacgcttct gatgttggta tcggtgccgt      2340
     attacagcag agaaagaata cagtttggca acctcttgct ttcttttccc ataaactcac      2400
     cccatcacag aagaaatata gcccatatga ccgcgagcta ttagcaatct atgaggccgt      2460
     aaaatatttt cgacccatgg tagaagcaag gaactttgtt atttatacag accataagcc      2520
     tctaaccttc gccttcgcta aaaatagaga aaaatgtaca ccacggcaat ttcgatattt      2580
     agattacatt tcacaattta caacgagtat cttatacatc tcaggtcgtg ataatgtcgt      2640
     cgccgattca ttgtccagga tagaggaagt tagtatcgca atagacttcc aacagcttgc      2700
     acaatatcag aagtctgacg ctgaattgca aaatctgctt aagcaaggct catcattgcg      2760
     gctcgagaag ataagaattc ctgagtcaac taccgaactt tactgtgata cctcaacctc      2820
     ttcgccgcga ccattcataa catccagcta ccgtcggcaa gtctttgatt ccttacacag      2880
     cttgagccac ccaggtgctg ctgctacagt gcgactggta acacagagat tcgtctggcc      2940
     agggattcgc aaggattgta gacagtggtc gagagagtgt atacactgcc aacgcagtaa      3000
     gatttatcgc cataccttag cccccttttc ccctattctc acacctacct cgaggttctc      3060
     ccatatccac ctcgatataa tcggcccatt gccagtttct ttagattata gatattgcct      3120
     cactatcatc gatagattca cacgatggcc tgaggcaatc ccgctcaagg acattaccgc      3180
     tgagacgtgt gcatctgctc tcgtgtctgg ttggctgggc agattcggtt gcccacacaa      3240
     aataacaact gacagaggac gtcaatttga atcacatcta ttcaacgccc tcagctccat      3300
     ggttggagcc aaacatttcc gaacaaccgc atatcaccct tcatctaatg gtatgatcga      3360
     gcgcctacat cgccagttga aagccgcaat catgtgtcac aattcttcca attggacgga      3420
     gactcttccc ttcgtattgc ttggaatacg gagcgcctgg aaagaggatc ttaaggcatc      3480
     gtcagcggag ctggtttatg gcgaaccgct ccgtcttcct ggtcagttca tcgctccatc      3540
     tatcgaccac accaccgaag accctaccgc cttggtcacc cgactacgtg cgggcctagc      3600
     caatttaaca ccgaaaccag catcttggca cagaaacggt ccattttata tcccacatga      3660
     cctgaaagat gcgacacacg tatttttgcg gcaggattat atccgaagac cgctagaacc      3720
     accttactca ggtccacata aagtacttga gcgtaatccg aagtactaca aagtcgaagt      3780
     gtcaggcaaa ccagtcacag tcacgattga tcgacttaaa ccagcatacc tgacacgtga      3840
     ggtaggcact ccagttacgg tgcctgcgaa gtcgacgtca gatgacacca agaggcgtac      3900
     aaggagcggt agaagagtcc gcttcccaga ctactttcga tcgcagtagc gatctcggtg      3960
     ggggagtac                                                              3969
//
ID   Gypsy-14_MeUr-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3029-3029 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 304 BP; 91 A; 62 C; 70 G; 78 T; 3 other;
     tgtagcatga cmtctgcacg ttacagaaac caaacawtat aaattaaatt tttgactgca        60
     acgaacaacc agacaaaaaa atatattacc agccgttcat atagatagcc gtacagaagg       120
     aatgcttcgt tcgcgccaat cgcgggctgc gagcgatacg gtcttcgcta cgtcaccgct       180
     cgctcgccgg tcgtctgccg gtagttgaat aaaataaaaa caagtgtgat cggctgttat       240
     tgtgttcggg wttggatgta cgttctgtgt tgaaggaaaa cagtgaagtg agttaactac       300
     tata                                                                    304
//
ID   Gypsy-14_MoPha-I repbase;    DNA;    INV; 5419 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5419
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1094-1094 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           958..1878
FT                 /product="Gypsy-14_MoPha-I_1p"
FT                 /translation="MPNEEDRVLLAELASLRDEIARLRGAQDAQQAVDVAA
FT                 PGNVAALYRQPKIANFCRDNPAIWFVQAEITLRNAGIRNSVTKADFIAEKL
FT                 DLEALQTVQDLLTAEPRPADIYEQIKARLIATYGSSSESRLRQLIKGQVST
FT                 CGKPSLVLTRLRALDSGCSEDVLRTVFLDQLPAPCRAVLMVSEVSDLNRLA
FT                 VMADKFVEASDAGAGNVAAVATVAPAKGRKRDKSAAPPSLDERLDKITKQL
FT                 QTLTNHLVKSSRARSPSRKRNSNKKGDAAVSSDKQSGYCYVHRKYGSKATS
FT                 CRKPCTWKDEGDSEN"
FT   CDS           1761..4997
FT                 /product="Gypsy-14_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RGSEFGQAVRLLLCSPKIRLEGNVLPKTVYVEGRRRL
FT                 GKLERPSRAETVRDEGATQSRLHVYDRTSGQRFLVDTGAEISILPASLRDR
FT                 SAPSELQLFAANNTKINTYGERRLTLDLGLRRPITWCFRVADVPYAILGAD
FT                 VLSHYKLIVNLHGRRLVDSVTSLATIGRVLNVPETKISMVDNSSTFADILA
FT                 KFPQVIGSAKSASPVAGAVEHHILTSGPPCTERPRRLPPDKLKAAKAEIKR
FT                 LMELGICRPSCSPWASPAHLVRKKSGEWRFCGDYRRLNAVTIPDKYPIPYL
FT                 HDFSANLLGKNIFSSLDLFKAYHQIPVAEADIPKTAVITPFGLFEFVCMTF
FT                 GLRNAAQTFQRYIHHALRDLDFAFVYIDDILIASSSEEEHREHLRIVLQKL
FT                 KEFGLVINPSKCILGVPEITFLGHLVNKDGIKPSSEKVAAISNFPKPHTVA
FT                 DLRRFLGAVNFYRRSLPHAARVQAPLHVYLTDSRKNDKREISWTPEAETAF
FT                 ATTKSDLANAALLAHPSASAETRLVSDASDFSMGAVLEQKFPEGWKPLAFF
FT                 SRKFTPAQRNYSAYDRELTAIYESIKFFRHFLEGRIFKVLTDHKPLVYAFN
FT                 QRADKASPRQARQLSFIAQFTTAFEYLAGSDNVVADSLSRIEALRLPVEIE
FT                 LVDLAAQQREDEELKHLLASNSSSLKLKKLIWGTSNTELYCELSGNSIRPY
FT                 IPVSLRRQVFDLFHNPAHPSAKVTDRVIRQRYIWPNLSHDVTDWASKCIDC
FT                 QQSKVSRHVKLEPAQFTAPDGRFDHIHLDIVGPLQPSNGFTYCLTMIDRFS
FT                 RWPEAIPIADITAQTVAKAFYENWIARFGAPRILTTDQGTQFESQLFSALL
FT                 KFLGCRRIRTTAYHPASNGMVERWHRSLKAAIMCHDSPDWTKVLPTVLLGL
FT                 RTHVRLDTKVSPAEFLYGTVLRIPGEFFLQEDFSPDPQIFVEDFRQHMRRV
FT                 KPVPVAHHYKKRAFVFKDLFSCSHVFLRKDNVKKPLERPYSGPYKVLERTT
FT                 DKVFSIEVNGRPVSISVERLKPAHLLPGDSDDPPLVKVPSSSEQADKTPTS
FT                 VNPPQGSLKTYSGPKKKVQFKL"
XX
SQ   Sequence 5419 BP; 1172 A; 1472 C; 1336 G; 1439 T; 0 other;
     attggtgacc ccgacgtgat gtgcgcggga aaatcgtcgc gagtgaaagc tacggagtgc        60
     gtgaaggcgg actcattcct cctgagcctt acttaaccgg agggctcggc gaagtcgtcc       120
     cagcgtcctt ctcaggacgc tcgatctaga acataccggc gccggcctcg cgccaggcga       180
     gcgcgcgcgc ggcgacattt tcgtgtcgcg tgagtgcatt ctcttcgccc ttgtgcaccg       240
     ttgcctgcgg tttgggaccc gcagcaacgt tcggcgcgct acgccgcttc aagaaacccg       300
     tcctccgacg gtcgtgcgcg aagcacgtat tcaagaaatc cgtcctccga cggtcgtgcg       360
     cgaagcacgt attctagaaa tccgtcttcc gacggtcgtg cgcgaagcac gtcttcgccg       420
     ggaaggattt ggagttttgg gacgcgcgcg cagcacgaac ttccaccacg tggagagcgc       480
     cccacggacc gccatttttg aggtgactcc agccatcgtc atcgtctccg atgcggcgca       540
     gggacagtct gggccactgc ctctgcggtc atcttcccgg tacccttatt tttgttcgat       600
     actgcgtgga atatcgtgag aaattctttg ggtctccgat attcctcgca atggcgtcat       660
     cgcgctagtt agtctaattt tgtaattccg gcgtttctca gcgttagtgc gctgtcattt       720
     ttgtagcggg ttggcgcgtt ccttgttgct acgcgcgtta gttacccccc ggttccctcg       780
     ctcgtggccg cgtacgcctc gctcgtgcgg catctgtttt ccgtgagaca tttcttttgt       840
     caccacgcgc gttgccgtgc ggtctcgcgc gtggtcccga gggttcgagg aggcgtttcg       900
     tttctgtttt tttttttttt tgatcgttcg cgcgtcgcgc tcgcatttcg ttcgaaaatg       960
     cctaacgagg aagaccgcgt gttactagcc gagctcgctt cgctgcgcga tgagatcgcc      1020
     cgcctccggg gcgctcagga tgcccagcag gccgtcgacg tcgcggcgcc tgggaatgtc      1080
     gcggcgttgt atcggcagcc taagattgcg aacttctgtc gcgacaaccc cgcgatttgg      1140
     tttgttcagg ctgagataac ccttagaaac gccggaatca ggaattcggt gacgaaagcg      1200
     gatttcatcg ccgaaaaact agatttagaa gcgctccaga ccgtccagga cttattgacg      1260
     gcggagccgc gtcccgcgga tatttacgag cagatcaagg ctcgactgat cgcgacgtat      1320
     ggtagctcgt ccgaatcgcg tctgcgacaa ttgatcaagg gccaggtttc gacctgcggc      1380
     aagccgtcgc tcgtattaac gcgcctccgc gcattagatt cgggttgctc agaggatgta      1440
     ttgcgtactg ttttcttaga tcagttgccg gctccgtgcc gggctgttct catggtctcc      1500
     gaggtctcag acctaaatcg attagccgtt atggcggata agttcgtcga agcttccgac      1560
     gcgggagcag gtaatgtcgc cgcagtcgcc acggtcgcgc ccgctaaggg ccgtaaacga      1620
     gacaaatccg ctgctcctcc gagcttggac gagaggctgg ataaaatcac taagcagtta      1680
     cagactctca ccaaccattt ggttaaatct agtcgagcgc gttcgccgtc gcgcaagcga      1740
     aattcgaata aaaagggtga cgcggcagtg agttcggaca agcagtccgg ctactgctat      1800
     gttcaccgaa aatacggctc gaaggcaacg tcttgccgaa aaccgtgtac gtggaaggac      1860
     gaaggcgact cggaaaacta gagcgcccgt cccgcgcgga gacggttcgg gacgaggggg      1920
     cgacacaaag ccgtctgcac gtttacgatc ggacttccgg tcaacgtttt ctggttgaca      1980
     cgggcgcgga gatttcgata ctccccgcct cgttacgcga tcgttcagct ccttccgagc      2040
     ttcaactctt tgccgcgaat aacaccaaga taaacactta tggtgaacgc cgtcttactc      2100
     ttgacttagg cttgcgccgc ccaatcacgt ggtgtttccg agtcgctgac gtaccgtatg      2160
     ccatcctcgg cgcggatgtg ctttcgcatt ataaactaat cgttaactta cacgggcgtc      2220
     ggcttgtcga cagcgtcacg tctctcgcga ccatcggccg ggtattgaac gtccccgaaa      2280
     ccaaaatatc gatggttgac aacagttcta ccttcgcgga cattctggcg aaatttccgc      2340
     aggttattgg ttccgcgaaa tcggcttccc ccgtcgcagg tgctgtcgaa caccacattt      2400
     tgacttccgg tcctccatgc acggagcggc ctcgtcggct tcctcccgac aaattaaaag      2460
     cggctaaggc cgaaataaaa cgtcttatgg agttgggcat ttgcaggcct tcctgtagcc      2520
     cgtgggctag tccggcgcac ttggtgcgca agaaaagcgg cgaatggcgt ttttgcggtg      2580
     actaccgtcg ccttaatgcc gtgactattc cggacaaata cccaattcca tacttacacg      2640
     atttttccgc caacctgttg gggaaaaaca ttttttcgtc ccttgactta tttaaagcct      2700
     accatcagat cccggtggct gaggctgaca ttccgaaaac ggcggtgata accccgttcg      2760
     gtttattcga gtttgtttgc atgactttcg gtttgcggaa tgccgctcaa acattccagc      2820
     ggtatatcca tcacgcgctg agagacttgg acttcgcttt tgtatacata gatgatatcc      2880
     ttatcgcctc ctcctccgaa gaggagcata gggagcatct acgcattgtc ttgcaaaaac      2940
     tcaaagaatt cgggttagta atcaacccgt cgaaatgcat tcttggcgtg ccggaaatta      3000
     cgtttctcgg acatctcgtc aataaagatg gcatcaagcc ttcctcggaa aaagttgctg      3060
     ccatcagcaa ctttccgaaa ccgcataccg ttgcggactt acgccgtttt ctcggtgcag      3120
     taaattttta cagacgtagt cttccacatg ctgcccgtgt gcaggcacct ttacatgtct      3180
     accttaccga ttcgcgtaag aacgacaagc gtgaaatttc ttggactccc gaggctgaaa      3240
     ccgcgtttgc tacaacaaaa tctgacctgg ctaacgccgc gttgttggct cacccttccg      3300
     cttcggcaga aactcgtctt gtttcagatg cttcggattt ttcgatgggg gccgtcctcg      3360
     agcaaaaatt tcctgagggt tggaagcctc tggctttctt ttcacgtaaa tttacgcccg      3420
     cccaaaggaa ttacagcgcg tatgatcgcg aactgactgc tatctatgag tccattaaat      3480
     ttttccgaca cttcctcgaa ggtcgcattt tcaaagtcct cacggaccat aaacctcttg      3540
     tttatgcctt taatcagcgt gctgataagg cttctccgag gcaagctcga cagctgtcat      3600
     tcatagctca attcactaca gcgtttgaat atcttgcagg ttcggacaac gtagttgccg      3660
     atagcctttc tcgaatcgag gctctccgcc tcccagttga gatcgagttg gtcgaccttg      3720
     ccgctcagca aagagaggac gaggagctta agcatttgct ggcctccaac tcttcttctt      3780
     taaagcttaa aaaattaatt tggggaactt ctaacacgga gctctactgc gaattgtcag      3840
     ggaactcgat acggccctac attccggtat ctctaagaag acaggtcttc gaccttttcc      3900
     ataaccccgc gcatcctagc gcgaaggtta ctgatcgtgt catccgacaa cgttacattt      3960
     ggcctaacct ttctcatgac gttacagatt gggcaagcaa gtgcattgat tgccaacaaa      4020
     gcaaggtttc ccgacatgtc aagctcgagc ccgcgcagtt taccgcgcca gacgggcgct      4080
     ttgatcatat ccatttagat atcgtcggac ctttgcagcc cagtaacggt ttcacgtatt      4140
     gcctgaccat gatcgaccgt ttctctcgct ggccagaagc gattcctatc gcagatatta      4200
     ctgctcaaac ggtggctaaa gcgttttacg agaattggat cgctcgattc ggtgcacctc      4260
     gtatacttac gactgatcaa ggcactcagt tcgagtcgca actgttttcg gccctgctca      4320
     aattcttagg ttgcagacgg attcgcacta cggcatatca ccctgcgtct aacggcatgg      4380
     tcgaacgttg gcatcgttca ttgaaggcgg ccattatgtg ccatgactct cccgattgga      4440
     ctaaggttct cccgaccgtt ctacttggtt tacgtacgca cgtacgtctc gacaccaaag      4500
     tctcgcctgc cgagtttctc tacggcaccg tcttaagaat ccctggtgaa ttctttctcc      4560
     aggaggattt ctctccggat cctcagatct ttgtcgagga tttccggcag cacatgcgtc      4620
     gggtgaagcc agttccggtc gcgcatcatt ataaaaaacg cgcatttgtt tttaaggatc      4680
     tattttcctg ttctcatgtt ttcttacgca aggacaacgt taagaagccc ttggagcgac      4740
     cgtactccgg cccctacaag gtgctcgaac gtaccaccga caaagttttt tctattgagg      4800
     tcaacggcag acctgtgtca atttccgttg aacgtcttaa acccgcgcac ctcttacccg      4860
     gcgattcaga cgatcctccg ttagttaagg ttccgtcatc gtccgagcaa gcggataaga      4920
     ctccgacctc tgtaaatcct cctcaaggat ctctgaaaac gtactccggt ccaaagaaaa      4980
     aagtgcaatt caagttgtaa cattaaagac tgtgagaatt ccgtcactaa gtatatagtc      5040
     ttgcgtgcgc tagttttaag tccacatttt tgtattagtc ttaagcgttt tgttcttgta      5100
     tcaattagta ttctttattg ttccgtctag tctgcgtcta ctcattagtt ctaagcagcg      5160
     ctacgttcaa agaatttcta ttttctagta cctttcgtac tcaagttgcg tctactctct      5220
     agttctaagc agcgttacgt ttaagaaatt ttatacctct tcgttttgca attgcattca      5280
     acctgcgtat actacatagt tgtaagcagc gttaacttgt aaaagattgt tcctaccgca      5340
     acgaattgtg atattattta tagccactta agtgcctatt gtaaacattc tctccatcgt      5400
     taacactcgg gggggagtg                                                   5419
//
ID   Gypsy-14_MoPha-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-302
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1178-1178 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 302 BP; 58 A; 89 C; 66 G; 89 T; 0 other;
     tgtggcgact agccatgcgc atctatgtat cgcatgaccc gcgcctacgt ggcgctgtgg        60
     gtccttcttc ttccggcggg aaattagtcc gccattggtc tcgcgctccg ctacacgcct       120
     taccggcgtg ctctgtaata tctttcctcc gttccaataa atgttgttac tgtttgactc       180
     cagtgtcctg ttagttatcc cggtaacaca cggaagtcgt agggacttcc gtgcgacgat       240
     ccctcacacg atcttaattt aattacgcca cgtgcgtgat aacattcata cttatcccta       300
     ca                                                                      302
//
ID   Gypsy-14_MSe-I repbase;    DNA;    INV; 4503 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4503
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 891-891 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4503 BP; 1523 A; 815 C; 903 G; 1262 T; 0 other;
     tcagaagtgg gatacgcaat gccacgctca ccgaatagtt cgtctatatc gcgtagtcgc        60
     aaaagaagat taagaacagt atcttcaact agctcgagct cgtcttcttc caactcgagt       120
     agtagctgtg accaacagcg acgaaaagta agcgccgccg acgcaagggt tcacaaaccg       180
     tgagtcaaaa cgttttgtta gcgtcagtta ttcccgaatt tgacccgctt gtagataata       240
     tagatatgtg gctcaatgta gtagaagcca attctcgcgc attcgggtgg tctgacaata       300
     tgaccaaata ccaagccctt caaaaattgc gtaacactgc gaaaacttgg ctagattctt       360
     tgcaaaaaaa tgaaactaaa tggaccactt ggaaatggag gcactggcga ggtgtattgt       420
     ccgatacttt tcaagtaaaa cgtaatatgt ttagagcact caaagaacta attgatgcaa       480
     aaccattggc taatcagtcg ttgtacgaat tcttttttca acaaaaatca agaatagatc       540
     gtttacagtt aaaattccgg gaacaagaca ttgtatctgt aatagttgga acaattggcg       600
     atactaatat aggtatggcc tcagaagctg gtaattttaa gtattgcgat gatttagcgt       660
     cttttttaca cgggaaaaac tactcgcttc ctgaaaagga acctactcaa aagaactcaa       720
     ttcttttcaa aggttatcga ttgcctcaaa ccgggcctca gaatccgata gctagtaaat       780
     ctgagagtaa atccgaacca tctccttcca ctagtggtct tcctcataca agcagtatat       840
     gttatcgctg tggagaagtg ggtcatagga gaaacaactg tacagttaaa gatactgtca       900
     gatgttcatc atgcaaaaaa ataggtcacc tagaagaagc ttgtaagtca aaagcaaaaa       960
     ctaaaacgga aaagggttta gaagttaaaa tgatatcaga gatcaaatcc aagcaaaagt      1020
     tttacaaatc tgtcttatta aatgatgttt tatgtaatgc cttctttgac atgggtagcg      1080
     attgttcgtt aataacgagc atattagcaa ctcagcttaa cttgcaaccc tttaatttaa      1140
     ataaatctgt tagtttagta gggttcacaa aggatttatc tgctcaagta acaaaagcag      1200
     tcgcagcgac tcttaaagtc gattctgttg aatcagtcat tattttatac gttttcgata      1260
     tgctatctga ttgcgatatt ttgattggcc ggaattttac ggaagacagc agtataatgt      1320
     atgttcgtgt aggcaatact ttaaccttta aaccggtgcc aactatgaat gtttgtaccc      1380
     ttaacgtaga aagaaatgtg tttcgtgagc atgaagtaac attgagaaaa attcttgcaa      1440
     aataccctca atgtttttct gacgatttat cttgtctagg caaaacctcg tgtgtagaat      1500
     tagaaataca attgacatcc agtaaaccca tttgtcaggg cccatataga atgtctgagt      1560
     cagaaagagc aatcatgcgg ggaatagtag atgatctttt gaagaatgga attatacaga      1620
     acagtaactc gccttacgca agccccgctt tattagtaaa taaagcttgt ggtaccaaaa      1680
     gattatgtgt tgactacagg caattaaata aaatcacggt aaaagagaaa tatcctatgc      1740
     ctataataga agatcttatt gatagattac agggctgtcg attttatacc tctttagacc      1800
     tcaaaagtgg ataccaccaa atttgcatca aagccgaaga tgtgcacaaa actgcgttca      1860
     taacaaatga tggtcatttt gaatatttga gaatgccatt tggagtatgt aatggcccgg      1920
     cagtattcca aagattaatg aacacggttt tgggtaatct tcgctttgga agagtaatat      1980
     gctatatgga cgatttactt atagccacca agagcattga ggaaaatata gcttgcttgg      2040
     aaacggtatt agatatattt gtgaaaaatg ggcttactat aaatttagac aaatgtttct      2100
     tttttcaaaa tcgagtaacg tttttaggct atgatatttc cgaacaaggc gttcgtccaa      2160
     attctcgtaa gctcgacgct atttctcact acccaagtcc aaaaacggtc caccaattaa      2220
     gacaattttt aggtttaatt aactatttta gaaaatttat aaaaaactgc gctctgcttt      2280
     gtaaaccatt aactagtctg ctaaaaaagg gagcaatgtg gcagtggggc tctcaacagg      2340
     accaggctgt cattgatctt aagaatgcgt taattaacag cactgtgctg aatgtctttg      2400
     acccaaaatt acccatcaac ttatatactg atgcaagtcg tgatggtata ggatgcattt      2460
     taatccaatc agtagatggt gtggaaaagc cagtacattt ttacagtcgt caaaccaaca      2520
     ctgacgaaaa aaaaatcact ccttcgagct agagctttta gcgatcgttg caggattaga      2580
     aaaatttcga cattatttaa taggcacgaa ttttaaaatc attactgact gcaatgctgt      2640
     acggcacgca ctaagcaaaa aagaaattat tccacgaatt agtaggtggg tattatatac      2700
     gcaagacttt acatttgaaa tagtccacag agccgggtca caaatgcagc atgtcgatgc      2760
     gttaagtaga aaccccgtcg tttttgatga cgctccgata acagaaaacg ttaacactat      2820
     aacggaaggc gattggttat tatcagtcca gttacaagac cctgatatct gtagtatcag      2880
     ggacatatta caatcaggtg aggccgaggc aaataaacaa atattcaatg agtatgaatt      2940
     gttaggaaac aaagtttatc gaagaactga gtttgggcga cgttggctag tacccaagca      3000
     atgtatctgg ttcgtgattc gagccaatca tgacgaggta ggacattttg ctgttgacaa      3060
     aactgtcgaa agaattaagg caaagtattg gtttccccgt ttaaaaaaga ctgtatctaa      3120
     atatataaga aattgtctca attgtattta ttacaagaat attcatggga gaaagccagg      3180
     aaaactatat ccaattccaa aatatgccag acctttccat acactccata ttgatcatct      3240
     tggtccattc gttacaacta ctcgtcaaaa taaatatttg ttagtattag tcgattcgtt      3300
     tacgaaattc gtttttattt cggccgtaaa aaacaccaaa agtaaaattg taatcaatga      3360
     gttgaataaa atatttaaag tattcggaaa tccaaagcgt ttaatatgtg acgctggtag      3420
     tgccttcacg tccagattgt ttactggtta ttgcaaagat cgagaatata agagcccacg      3480
     taatcgctac ggcgataccg cggtcaaacg gacaagtgga gcgttacaac caaacaatct      3540
     tagaagcatt acgcagtatg ggtgctgaca acgaaaacaa taaatgggac caacttatta      3600
     cgaatattca gcaaggaata aacagcacta ttaataaaac cacgtctgcc gtaccaagcg      3660
     aggtgttctt cggatatagg attcgaatgg ataacgatgc gctaattgaa gatgacaaca      3720
     tggaatgtcc tgtaaacgtc accgaattga ggaatgcagt agacacgaat ataaagaaaa      3780
     gcgctgaaag acagaagaca actttcgatg ctaaaagaaa agatgctccc agttataaga      3840
     tcggagactt gatcgtgctt aagattccga gccactcaaa tgatggtgaa agcactaaac      3900
     tgatgcccct ctataaaggt ccattccaag taacggaagt cttgggccac gatagatatc      3960
     gagtagtgga catgagaggt gcagaaagat cttccaaaag gtatgatgga attacatgcg      4020
     tagagaatat gaagccatgg atccatattg cctaaaaccg gatgttgtcg aaaggtaatc      4080
     aattttaatc gttatgaatt cagtgtaacc cttttaaata tttagactgt tacagtacaa      4140
     caaacctatg attaaaaggt ttaatatatc cgcttcaaac ataatgaggc catgtatagt      4200
     tgtttggtta gacaccctgc aacaggcatc cgttgtgaac gctgttgtag tacaggcggt      4260
     gatatacaac tagaacgatc ctgaatgaac atcgtctagt taaaaccgca ggtgatgagt      4320
     gtgttggccg acgatgggat aacacacttt actaacctca agcacactac atgtggcacg      4380
     atataactgt ttaaataata tataatatta tatagataac taattcatgc atcattacgt      4440
     tttcagcttc tatattacac caaaacgctg ttcggggacg aacgcgtaag caggacggcc      4500
     gga                                                                    4503
//
ID   Gypsy-14_MSe-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-249
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 940-940 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 249 BP; 74 A; 52 C; 43 G; 80 T; 0 other;
     tgttgtcgca cctatcgtct ccactgtcaa aactaccttc attttaatat tgtaccacct        60
     tttcccctct ccacgtgaac tgtcaaacaa cattataaaa gaggcagcat tggacgaaga       120
     gaagaagttg ttccttaacc gtcgtagagt gcggatgtct cagtaaaata gtgaattagt       180
     gtgataagtg tctgattata ttaaatcata tatactactg tgttggcgta ttactacact       240
     tcactcata                                                               249
//
ID   Gypsy-14_OrIn-I repbase;    DNA;    INV; 6154 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-6154
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1555-1555 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..1801
FT                 /product="Gypsy-14_OrIn-I_1p"
FT                 /note="PHD finger at the N-terminus."
FT                 /translation="MEGVCHVCKKGATLDLDACKCAQCEQVFHFPCDNLGS
FT                 REVYIKRNKADRASWRCGACKLSPQYLQAQINSISTRLEAIKSRNAELEKE
FT                 NKDLAQQLLGVRTLAHQQAELSEALARNAELQKDKLKSVEQLAKLGLASRV
FT                 RGGDEKEEGATSGGSKFEAFPVPPHKFPRHLEEVVKSLPILQTDDPWKMVE
FT                 FVGKLHDVNATCKDFFGEIFVRLAVSQPNDFLRQLVSESGSEIDFQTVKEK
FT                 LIGQFIDERTRTFLLSKKVLRNQRFEEPFRSFARDVIKFAEILGSYSAENL
FT                 IGIVLSGVNLATRARFQFLQKPTSLVDLDKLILEVERLEVASKMHGKKPPQ
FT                 SSFNRRASWDKTPTPKSAPSETEPDQGTDRKGGFYKKSFYSSNKNSNLQKR
FT                 DQKRVQQVSQLTATESPTPSQQGKPSPPKMGKVRPDLGGKTEVAGEKKSDQ
FT                 KNNQKN"
FT   CDS           1780..4935
FT                 /product="Gypsy-14_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="PKKQPKKLNHRVCGLAGRGGPIFLRILLKTLKTEALV
FT                 DTGATVSCIRGNLVGPLLKLPGKSKITGCVEKIIVGNSQSVEIREKALLGL
FT                 KIDKFSWFHEFWVVPQLPVQVILGLDFITSSGMSIDPAKKIIKFNFQKNHV
FT                 INLFSEADLAALNFSLFQNPNSLLNTLTDLFPDVLTRQLGCTTVLSYNITL
FT                 QKDAVLDSRGSRIAYRSGPERHAILRSKIDGLLSEGVIEEVTSHFTSPCFL
FT                 VPKKTPEGESRDFRLVVDYRALNSKIRYIAQQTPTIDEAFIHLREGKVFTL
FT                 FDLNSAYNQIPLTEESKKLTAFQVPWGTYAYRRVPFGLATGGQILQILMEK
FT                 VFGDLVYKFVFFYFDDLVVYSANLMNHIGHLKVVFGRLRDAGLTVNPGKLQ
FT                 LARERIGFLGHVIQHGQVSIDPSRTEALLKIPRPVSLYDLDAFLGAINFFS
FT                 RFIPDYGKIAAPLNDLRKGGRQKGKSKKSSKPLAWNDQAQAAWERLREAIT
FT                 KPPILKTPDFSKRFAVFTDGSSMGVSACLAQESGGAFGPVAFASRKLKGPE
FT                 TRYSAFDLEALAISFALKKFHIYLEGGEFDLFTDHSALTSMINMQRNNGRQ
FT                 ARFAVQLMSYRFKAHHVSGKKNTIADYLSRYPEEAVVEQEKVETMAILKTI
FT                 PELFSNLAVKQGEDQELKVLIEKIKSGEQVPNYSLKKSILYFQIRKNTFRA
FT                 VVPESLKPLVFKYFHESLIGSHLGVSRTINKIRDILYFKNLKDFVARNVAA
FT                 CEICARTKVQQKAPHGNMSSYVSSRPGERLFVDLAGPLPSSSGYKHILVAI
FT                 DDFSRFCFLIPLRRPTAEVIVSKLQERIFSSFGYWGVVVSDNGSVFRSNKY
FT                 KDFLMGHGMKPQYLVRFYPNPSKAERVLRDVKTALMAFYGENQSKWSQGLG
FT                 FIQIGLNAAKNESTKFTAAQLFLGRHLNTPINLNWDIDYDKGDTPIKMYEI
FT                 AFQNMQKALKVSKKFYDRKHTPVEFQVGDIVYLKAYNLSNASMNFQGKLAY
FT                 RFDGPYQIAQKLSDVTYKVERVDDPSDCKKAHVSQLKPGTKTAGNV"
XX
SQ   Sequence 6154 BP; 1832 A; 1181 C; 1380 G; 1761 T; 0 other;
     aattggtagc agagcatggt ttttatttta agtgggtgtg gtaaaggaaa ttttttattt        60
     taatttttta ttttatgtaa tatatttgta aataattttg gtgatttata aggtgaagaa       120
     gggttgaatt aaaaggtgtt ttattattgt tttatgtttt tgtattctac cattacagca       180
     gaaaagagtt ttttttgttt taaaaaaaga aaaatttttt gagttttatt ctataaaact       240
     ggtcaaggtc gagtccgctc cagtgatagt cctaatttaa taatccctca tttcggatta       300
     tcgccttatc tttgtctttc ggacatcaga tctttatttc gtttactttt aaaatttttt       360
     tccattttcg acaatttttt tttctctcca ttttcggcat tctggttcga cagtagtcgt       420
     tagatttcaa gtttctacgt atttcaaaat ggaaggtgta tgccatgtct gtaaaaaggg       480
     agcgacgcta gatttagacg cgtgtaaatg tgctcagtgt gagcaagttt tccattttcc       540
     atgcgataat ctaggcagtc gtgaggtgta cattaagaga aataaagccg atagggcgtc       600
     ctggaggtgt ggagcatgta agttgtcccc acaatatttg caggcgcaaa ttaattcgat       660
     ttcgactcga ctcgaagcga ttaagagtag aaatgcggag ttagagaagg aaaacaagga       720
     tttggcgcag caattactag gcgtaaggac gctagctcat cagcaggccg agttgtcaga       780
     agctctggct cgtaatgccg aacttcaaaa ggataaattg aaatccgtag agcaactggc       840
     caagctagga cttgcgtcaa gagttcgtgg tggagacgag aaggaggagg gggcgacttc       900
     agggggctca aaattcgaag ctttccctgt accaccgcac aaatttccgc ggcatctgga       960
     agaggtggtg aagtctttac ctatccttca aacggatgac ccatggaaaa tggtagagtt      1020
     tgtaggaaag ttgcacgacg tcaatgcgac atgcaaagat ttttttggtg aaatttttgt      1080
     tcgtttagcg gtttcacaac cgaatgactt tttgcgtcaa ctagtctctg aaagcggtag      1140
     cgaaatagat tttcaaacgg tcaaagaaaa attaataggt caattcattg acgaacgaac      1200
     taggacattt ttgctgtcga aaaaggtttt gagaaatcag aggttcgagg agccatttag      1260
     atcgtttgca cgggacgtca tcaaattcgc cgagattttg ggatcttatt cagcggagaa      1320
     tctgataggt atcgtcttgt cgggggtcaa tttggccacc agggctcgat ttcaattcct      1380
     acagaagcca acgtcgttag ttgaccttga taaattaatc ttggaggttg agaggctgga      1440
     agttgcatct aagatgcacg gaaagaagcc ccctcaatcc tcatttaatc ggagagcaag      1500
     ttgggataaa acacctaccc caaaatcggc accctccgag acagagcccg atcaggggac      1560
     cgataggaag gggggttttt ataaaaaatc cttttacagc tcgaataaaa actcgaattt      1620
     acaaaaaagg gatcaaaaaa gagttcagca agtgtcacaa cttacggcga cggagtcccc      1680
     cactccgagc caacagggaa aaccatcgcc accaaagatg ggtaaggtac ggcccgattt      1740
     agggggcaag accgaggtgg ctggtgaaaa aaaaagtgac caaaaaaaca accaaaaaaa      1800
     ctaaaccaca gggtctgtgg actcgccggg aggggtggac cgattttttt aagaatatta      1860
     ctcaagacat taaaaacgga agctttggtg gatacggggg ccacagtctc ctgtataagg      1920
     ggtaacctag tgggaccttt attaaaatta cccggaaaat ccaaaattac tggttgtgtc      1980
     gaaaaaataa ttgtcggcaa ctcgcaatcg gtggaaattc gggagaaggc tctacttggg      2040
     ttgaaaattg ataaattttc ctggtttcat gaattttggg tggtccccca gcttcccgtt      2100
     caagttatac tcggtcttga tttcatcact tcttccggca tgtcgataga cccggcaaaa      2160
     aaaataatta aatttaattt ccaaaaaaat catgtcataa atctattctc agaagccgat      2220
     ttagcggcgt taaatttctc gttattccaa aaccctaatt cgttgctaaa taccctcaca      2280
     gatctcttcc cagatgtttt gactcgccaa ttgggatgta cgaccgttct ttcatacaat      2340
     ataactctac aaaaagatgc tgtgttagat tcccgaggat caagaatcgc ataccgctca      2400
     gggcccgaga ggcacgcgat tttgaggtcc aaaatagatg gcttgctgtc agagggagtc      2460
     atagaagagg tcacgtcgca ttttacatca ccatgctttt tagtccctaa aaagacgcca      2520
     gaaggagagt cgcgcgattt ccggctggta gtcgactata gggcgctgaa tagcaagata      2580
     cgatacattg cgcagcaaac acccactata gatgaggctt tcattcatct ccgggagggg      2640
     aaagtgttta ctttgttcga tttaaatagc gcttacaatc agatcccttt gactgaggag      2700
     tcaaagaagc tgacggcgtt ccaagttcct tgggggacat atgcttatcg tcgagtgccg      2760
     tttggcctgg cgacaggagg gcaaattttg cagatattaa tggagaaggt cttcggagat      2820
     ctagtttaca aattcgtgtt tttttatttt gatgatctcg tggtttattc ggcaaatttg      2880
     atgaatcaca tcggacactt aaaggtagtt ttcggcaggc tacgagacgc aggtctaaca      2940
     gtcaatcctg ggaagctgca gctagcccgg gaaaggatcg gattcttggg tcacgtgatt      3000
     cagcacggac aagtatctat cgatccctct cgaacggagg cgctgctgaa aatacctcga      3060
     ccagtgtcgc tgtatgattt agacgctttt ttgggcgcaa ttaatttttt ctcgcggttt      3120
     attcccgatt atgggaaaat cgccgctcca ctcaatgacc ttcggaaggg aggtcgacag      3180
     aagggcaaat ccaaaaaatc cagtaagcct ttggcgtgga atgatcaggc gcaggccgct      3240
     tgggaaaggc tgcgtgaagc aattacgaaa cctcctattt taaaaacccc agatttttca      3300
     aaacgttttg cagtctttac ggacggttcc agtatggggg tctcagcgtg cctcgcgcag      3360
     gagagcggag gggcctttgg gccagtagca ttcgcctccc gcaagcttaa ggggcccgag      3420
     actcgatact cggctttcga ccttgaagct ctggcaataa gttttgctct aaaaaaattc      3480
     cacatttatt tagaaggtgg agaatttgat ctcttcactg atcacagcgc gctaaccagc      3540
     atgataaata tgcagcggaa caatgggaga caggcccgct tcgcggtgca gctcatgtcg      3600
     taccggttca aagcgcatca tgttagcggc aagaagaaca ccatcgccga ttacctctca      3660
     cggtaccccg aggaggcggt tgttgagcag gaaaaagtcg aaacgatggc gattttgaag      3720
     acgatccctg agcttttctc gaaccttgcg gttaaacaag gggaggatca agaattaaaa      3780
     gttttgatcg agaaaataaa atctggcgaa caagtgccaa attactcctt aaagaagtcg      3840
     attttatatt ttcaaattag aaaaaacaca tttagagcgg tagttccaga gtcattgaaa      3900
     cccttggtgt ttaaatattt tcatgagtcc ttaatagggt ctcatctagg tgtttcaagg      3960
     actataaata agattaggga tattttatat ttcaaaaatc taaaagattt tgtggcacga      4020
     aatgtagcag cgtgcgagat ttgcgcgagg acaaaagtcc aacagaaggc tccacatggt      4080
     aatatgtcca gctacgtgtc atcacgtcca ggagaaagac tttttgtgga tttagcggga      4140
     cccttaccat ctagtagtgg gtacaagcat attttggtag caattgacga tttttcgaga      4200
     ttctgtttcc taattccatt gaggaggcca actgcggagg tgattgtcag caagctgcaa      4260
     gagaggattt tcagcagctt tggctattgg ggagttgtag tctcagacaa tgggtcagtt      4320
     ttcaggtcta ataagtacaa agatttttta atgggtcatg gaatgaaacc tcagtatctc      4380
     gtccgttttt accctaatcc cagcaaagcc gaaagggtgc tccgggatgt aaagacggca      4440
     ctgatggcct tttatggaga gaaccagtcg aaatggtcgc agggactggg attcattcag      4500
     atagggttga atgcagccaa gaacgaatcc accaagttta cagccgccca gctgtttctt      4560
     ggtcgtcact tgaacacccc aattaattta aattgggata tagactacga taagggagat      4620
     accccgataa aaatgtacga gatagccttt cagaatatgc aaaaggctct aaaagtttcg      4680
     aaaaagtttt acgaccggaa acatacgcca gtcgagttcc aggtcggaga tatagtctac      4740
     ttaaaagcat acaatctttc caatgcaagc atgaatttcc aaggcaaact ggcgtaccga      4800
     tttgatggac cttatcaaat agcccagaag ctatcggacg tcacatacaa ggtcgagagg      4860
     gtcgacgacc ctagcgactg caaaaaagcc cacgtttccc agctcaaacc agggacaaaa      4920
     acagcaggaa acgtttaagt ctttaatagt cggtaccccc ctcacgcata gggatgcgat      4980
     atgacggcgg atgattggtg ccgctattaa atatttgtta taacttataa atgtaatgct      5040
     attaactaat tgttctcttc ccgaatccat atatgtactc acaaatgttg ttttccttat      5100
     acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5160
     aaaaaaaaaa acatgaaagt cttttggttt aaactggtat gattattttt atttgtttga      5220
     tagaaacgtt tatgaaagcg tttataaaat aatccttatt ttgataacga atggtcagcg      5280
     gcggtgactc tcgtctattt ttctttcgaa ggtacagttc gtaaagctat tttttcaaat      5340
     tttaaatacc taaaaacgaa attataaatt tgaattcctt taaatccttt aaaaaaaatt      5400
     aaataacata aattgttcac gacaattgtt tatattatcg cttccaatta tttatagaac      5460
     ttttgtaaac aaatcgtaaa agttaatccg cttaaagata gcatttatat taacttttcg      5520
     tcaatttaaa cgttaaacgt tctctattct tcattaatca tcattttatt tcgcatactt      5580
     ttctgtacca tttgagaaat tgtttaaaat cgaagttttt caagattttt cttttatata      5640
     gtaaaaccaa ctctttaaat tcttctacat gattaataag tttttgtagt ttttttttca      5700
     atttttataa acttcataag ggacaccact ttgcaaattt ctagatgcag taaatgttac      5760
     aattattgct atgtattaat tttcattgta tcgaggcaat taagggtcta cctgtgaagt      5820
     tccttacttt acaaccgtat cgtacctact tgggacgctt gttgatggat acggacgata      5880
     ctctttggcg gctaccgact ttctttccga cgctcgatgg atatactggc tcaaggacct      5940
     ttttgcttct ggctggccat cactttgggg ccatctacgg agacccggga acatcggtaa      6000
     gtcccccacc ctgagggttg tcatgggtac gacacgcgtc gcttgacgtc cgggtcgtgc      6060
     ccgcattgac acaggaagaa gtcggcagga gttctacacc ggtaggatat ttttttttcc      6120
     gtcgaccggt ggccgacttt taatcggggg gcag                                  6154
//
ID   Gypsy-14_OrIn-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-321
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1521-1521 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 321 BP; 92 A; 100 C; 54 G; 75 T; 0 other;
     tgtcaccccc ggtgacaacc caggccaggt agtggggggc ctcagcagag tcccggggac        60
     tcacggcccc ccaccaagac aggaagagac gaaccgccgc cacgtctaca cctcaagata       120
     atttaaagca caatcaaaca ggtagaccta agactttctg aagtgtatca atgaatgaat       180
     cattattaaa tatatttatt gtcccgatat acgtataaat tcttttaaat taacctaccc       240
     ttcccttcac ctaacaaaaa agctcctttc cttccccatt cccctcgtcc ggatcatccc       300
     tttcaccccc gatccgtgac a                                                 321
//
ID   Gypsy-14_PBa-I repbase;    DNA;    INV; 10730 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-10730
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 697-697 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..1617
FT                 /product="Gypsy-14_PBa-I_1p"
FT                 /translation="MTTRSKADKAKVDVLYNLGLESGGNPKKTKSETIYTS
FT                 TPAKTPASRPIAFPLEETSIVEELETICEASESNTLRPENLALTGKFDITT
FT                 NSQTEDLSKLSMAQNNPFATLKYAIEAVPFFDGQNIPLSYFIEGCEEAKSM
FT                 LPDEAESQFTKVIRTRIVGEARRTVAGQDFDNVAQLTNFLKQIYGHSKNVY
FT                 QLQGELGSIYQKGNEDVVTYANRVKILGKQILEANRNSGNSLPERSIMDSL
FT                 EKDMCKCFIRGLNPEIEQRVARNLDVKGTVADALRIERELRAISDLRRGSS
FT                 TTSKPIDITVPRETCQICYKGGHSANNCRKFNQNSYQNYSRTENLGNEILI
FT                 CQICKKRGHDANTCRLRDPQSRRTVNMIRENTITCQLCSKSGHNAKTCRTN
FT                 NNSNQNKAFLICQWCDKPGHSASNCWKKQNDQQTAGNKSKISCQNCNNFGH
FT                 TAKDCRSKLTQKSGSSPYCRYCKAQGHLLENCELRILNNNRRKANNSENSN
FT                 GPPKSGVQRGAEQVSHPSTSSTPR"
FT   CDS           join(1725..2729,2476..3996,3933..5198,5197..6375)
FT                 /product="Gypsy-14_PBa-I_2p"
FT                 /translation="MLDTGSGPNIIKEDFVPKNIAIDHSCILKLNGINEYP
FT                 VYTLGEITLTLFKILVKFHIVSNDFPISQSGILGNDFFKQTSSTIDYAQGH
FT                 LNISGINIPFSSPEIIIVPPRSESLFYVRIGNPEVKIGYIPKLKVAHGIYS
FT                 RDSIVENIAGKAYINIISTLDEETEIQVPILRLKTLDEILNDHEKNLEAHI
FT                 SKIPTYSLSLDSTETVNDKVNTLHGNDTEKVINPKNENEHVYLLEDGTTDT
FT                 NQEGNKNPMNPENENQIHEKSENKDKNKNEGFNFKILGGGNFQTSPENPEI
FT                 AEGSYQTSAQISIHPKILGGGNFQTSPENPEIAEGSYQPRSNKTLKMKIKS
FT                 MRNRKIKIKIKMKASISKSLEGEISKPLLRILKLQREVTKPLLKYQSIPRS
FT                 LEGEISKPLLRILKLQREVTNLAPINSPKTLEWKYQTTSKENSGIAEENFH
FT                 TSLAISSSVGCEEGSYQTSLRNSTQLYPREIKNKNFPLQLKNIKFRRIGML
FT                 SKERNKRTETSQNTIKELIGRANLINNYKMKDKKPSSRIFSSKQNQSQEIF
FT                 DKCIRKRKSKHKDKFTQGSLVTLTDNPHECLVISKEDERDRLTEIVESLRL
FT                 EHLNEQEKERVIKLIKISQDRFHIPGEKLTATHVLQHQIPTTDDLPINTRQ
FT                 YRFPQVHKEEINKQVGELLEVGIVKPSQSPYNTPIWIVPKKEDSKGNKRWR
FT                 MVLDFRALNDKTIGDAYPLPNIVDIIDQLGGAQYFSVCDLASGFHQIKMDP
FT                 SDSHKTAFTTPFGHYEFDRMPFGLKNAPATFQRLMDLVLTGLQGKELFVYM
FT                 DDIVIYASSLEEHERKYNNLINRLREANLKLQYSQINANFFNKQITRSKLK
FT                 ITIQPDKCEFLKSEVTYLGHVIGKNGIKPDPKKLEAVQQFPRPKTPKNIKQ
FT                 FLGLAGYYRRFIPNFSKLAKPLTNLLKNDTRFDWTSVQEESFEILKQKLCE
FT                 EPILQYPDFSKPFILTTDASGIAVGGILSQGEINKDRPIAYASRTLTDNEL
FT                 KYDTYEKEALAIVYCVKHFRPYLYGRKFTLVTDHKPLLWFKNAQDANMRIL
FT                 RWRLKLAEYDYDVVYKAGKTNVNADALSRNPVEIDCKTIINRKILNPNKPE
FT                 DADVISKLLEESEEEEEMEEDEDFELYLSDDEQSENLANIDNSFKENVDSI
FT                 PFTQEELNEPSKNQIIEKALIHNPPALRRIQTRSQTIKEKDDHLKRSQTYS
FT                 LINPETVEITDLANGNTPSREIAKKKKKKKKKKKKKKEKRKTKKRIMKITK
FT                 RMTLKETKPVIIENQVLKSNIIDSRELLFLRKDNIVYFVDINGKPLDSGSQ
FT                 KLFERNELPKLRDLILGKTRAIKYRNHYHLVLTISEGQREGPTMTLKQITS
FT                 ALKDLRKIADELKLETVSIAKTELIQNIPWSNIKTQIQLVFVDAYTKIIIC
FT                 NGLIKYPPKDLRSSIISEMHCAPTGGHRGVTKTYNRIKHNYYWEDLKSDVQ
FT                 KYIQQCLQCQLKKLVRVKTKQPMIITDTPGSAFDKVAMDIVGPLPKTEQGN
FT                 EYILTLQDQLTKFCMAIPLPNQTSETIAEAFVDKFICILGAPKAILTDQGR
FT                 NFLSDLMKKLAKIFKIRKLRTTAFHPQSNGSLERSHHALGEYLKQYATEGK
FT                 QWDRWIGLATFNYNTSVHEATKHTPYELVFGKIARIPSS"
FT   CDS           join(6740..7894,7833..8735,8782..9528)
FT                 /product="Gypsy-14_PBa-I_3p"
FT                 /translation="MIGRIAIMITFIWIRKAHGIIGYDCGSPQANLTTLSL
FT                 LNIEECDIPPQTLKKARVYLQLLQVMINEFRSIKVHQCKIEIDRLIRKCGM
FT                 FSHSMDVPNGKYSYIQEVSQRACINMHVFGNYHLGATLITGIHPNQTITRP
FT                 VTLAGQLDADGTCHGGTYSDPYGTWTDVTVLATIKITLQDYTAKVKVDTNR
FT                 IILRSGVTCELTTQCIDLEGGDTFWNALPEDDCQLSNYGLLYEGVAGKIID
FT                 QLDDQPMEIYALVADDMVFALTSKGTISKCGYTLTRTEHPKLFIFITTPDN
FT                 KVFKKTENRAYNLDILTYVNSKFVYVERHVRTQMSQLYRNVLLQQCNLEQK
FT                 MLKNALAIATQSPDVFAYHLMKGPGYGPTSRRGNTHNKVRTSRDQDMALRA
FT                 GEVIHIIKCVPVEVKIAQTDKCYDQLQVIRDNQTQFLTPQTHILLQQGTEV
FT                 NCNKLAPAMYLLGDSWYKFTPKPIESLPPIIIKPTTKLTWKYINPGALATS
FT                 GIYTEKDLQDLRDHIMFPAERPAVLNTVARGILGQPGSVNGGSFSNLLDEA
FT                 SIEKIATSAWEKFWDRFLIFGNISAGMIGIYMTIRILKLILDTAVHAYTLH
FT                 TVYGWSIHLLGAIWDSITHLLLHLSTYGQKKPSEASAPPPECNSEHTTPSN
FT                 ALQEAPTKGANPNSIYPPLPTEVVPTSQPTFSLQLKNYRRMESNVIDTSRL
FT                 TRGRLDCKVLRMESPHLFWIRLKTGEPSLKELMEELGFRMNRKSSTLICWP
FT                 HLVKINLAVAIKEGDIWHRGIITAVGRIQGIARVALRDEGREVWRRFNELY
FT                 ILEDRFQELPWQALTCGLAYTGPTVPTLVWSKKIRALCQILAEEQEGYLKI
FT                 VHPLQDGAALIKLVISHENGHMQLNLRDALVNLGYARIDKRVAVNIYPSVE
FT                 INKCNHKIMRNTLAVDSSSSFQEEPLQFHFN"
XX
SQ   Sequence 10730 BP; 3935 A; 2180 C; 1987 G; 2626 T; 2 other;
     aatagcggaa atttgggggc tcgtccggga tgataggtgc gatctttgga gacgggaatg        60
     actacgaggt ctaaggccga caaggctaaa gtagacgttc tctacaatct tggtctagag       120
     agtggcggta atcctaaaaa gactaaatca gaaactatat acacttctac cccagcaaaa       180
     actcctgctt ccagacctat tgcctttcct ttagaagaga cctcaattgt tgaagaatta       240
     gaaaccattt gcgaagcatc cgagtctaat acattacgcc ccgaaaattt agcgttaacg       300
     ggcaagtttg acattactac gaacagccag acggaagatt taagtaaatt aagtatggcg       360
     caaaataatc ctttcgccac attaaaatac gctattgagg ccgtcccttt ctttgacggc       420
     cagaacatcc ctctaagtta ttttatcgag ggatgtgaag aagctaaatc catgttacca       480
     gatgaagccg aatcgcaatt caccaaagtt ataagaacgc gaatagttgg ggaagcccgt       540
     cgtaccgtcg caggtcagga cttcgacaat gttgctcaac ttacaaattt tttaaaacaa       600
     atttatggtc attccaaaaa cgtatatcaa ttacaaggtg aactaggctc tatttatcaa       660
     aaaggtaatg aagacgttgt aacttacgca aatcgggtaa agattttagg gaagcaaata       720
     ttagaggcca atcgaaactc cggaaattct ctcccagaac gtagtatcat ggactcatta       780
     gaaaaggata tgtgtaaatg ttttattaga ggtctgaatc cggaaatcga acaaagagta       840
     gccagaaacc tcgacgtcaa gggaactgtg gccgatgcat tacgtataga aagagaatta       900
     cgcgcaattt cggacttgcg ccgcggatca agtaccacct caaaaccgat tgatatcact       960
     gtaccgcgag aaacctgtca aatttgttat aaaggtggac attcagctaa taattgtagg      1020
     aagtttaatc aaaattctta tcaaaattat agtagaaccg agaatttggg aaacgaaata      1080
     ctgatttgcc agatttgcaa gaaacgcgga cacgacgcta atacgtgtcg acttcgcgac      1140
     ccacagtcac gacgaaccgt taacatgata cgcgaaaata ctatcacctg tcagttatgc      1200
     tcgaaatcgg gacataatgc caagacttgt cgtacgaata ataacagcaa tcaaaataag      1260
     gctttcctga tctgccaatg gtgcgacaaa cccgggcact cggccagtaa ttgctggaag      1320
     aaacaaaatg accagcaaac agcgggaaat aaatcgaaaa tctcttgtca aaattgcaac      1380
     aacttcggtc ataccgctaa agattgtcga tctaagttaa cccaaaaatc gggtagctct      1440
     ccgtattgtc gctactgcaa agcacaggga catcttttag aaaactgcga attacgaatt      1500
     ttaaacaata atcgcagaaa agcaaacaat tcggaaaact ccaatggtcc accgaagtcg      1560
     ggtgtgcaac ggggggccga gcaggtttca cacccatcga cgtcttcaac accccgataa      1620
     aaaacacacc gaacgctcaa cccgtgacag taaacctcga caaacatagt cgcgtgccta      1680
     ctgtccggat aaccttagat aagataawtt ctcctttaac ttttatgtta gatactggtt      1740
     ccggaccgaa tataatcaaa gaagattttg tacctaaaaa cattgctatt gatcactctt      1800
     gcatattaaa attaaatgga ataaatgaat accccgttta tactctcggt gaaattacct      1860
     taactctctt taaaatctta gtaaaattcc acatagtgtc taacgatttc cctatttcac      1920
     agtctggtat actcggtaac gatttcttca aacaaacctc ttcaacgata gattatgctc      1980
     agggacattt aaacatatct ggaattaata taccattctc ttctccagaa atcatcatcg      2040
     taccaccacg ctcagagtcg ttgttttatg tgagaatagg taaccccgaa gtaaagatcg      2100
     gatacatacc taaattaaaa gtagcwcatg ggatttattc gagagattcc atagtagaaa      2160
     acattgctgg aaaggcatac ataaatatta taagtacgtt agacgaagaa acagaaatac      2220
     aagtaccaat attgcgactt aagactctcg acgaaatact caacgatcat gaaaaaaatc      2280
     tcgaggcgca tatttcgaaa attccaacgt attcattatc tctggacagt actgaaactg      2340
     tcaacgacaa ggttaatact cttcatggaa atgataccga aaaggttatc aatcctaaga      2400
     atgagaacga acacgtttac ttacttgaag acgggactac agatacaaac caagagggaa      2460
     ataagaatcc tatgaaccct gaaaatgaaa atcaaatcca tgagaaatcg gaaaataaag      2520
     ataaaaataa aaatgaaggc ttcaatttca aaatccttgg agggggaaat ttccaaacct      2580
     ctcctgagaa tcctgaaatt gcagagggaa gttaccaaac ctctgctcaa atatcaatcc      2640
     atcccaagat ccttggaggg ggaaatttcc aaacctctcc tgagaatcct gaaattgcag      2700
     agggaagtta ccaacctcgc tccaataaat agtcccaaga ccttggagtg gaaataccaa      2760
     accacctcaa aagagaattc tggaattgca gaggaaaatt tccacacttc tctagcaatt      2820
     tccagctccg tcggttgcga ggagggaagt taccaaacct cactgcgtaa ctcgacacaa      2880
     ctctatccaa gagaaattaa aaataagaat ttcccgcttc aactaaaaaa tattaaattt      2940
     cggagaattg ggatgctctc gaaggaaaga aataaaagaa cagaaacctc tcaaaatact      3000
     atcaaggagc tcataggaag ggcaaactta attaataact ataaaatgaa agataaaaaa      3060
     ccgtcttcca gaattttttc atcaaaacaa aatcagtctc aagaaatatt tgataaatgt      3120
     atacgcaagc gtaaatcaaa acataaagac aaattcacac aaggatcact cgttacctta      3180
     accgataatc cccacgaatg cttagtaata tcaaaggagg acgaaaggga tcggcttact      3240
     gaaattgtag aatccttgcg gttggaacac ttaaacgaac aagaaaagga aagggtaata      3300
     aaacttataa aaatcagtca ggacagattc cacatacctg gcgaaaaatt aactgccact      3360
     catgtattgc aacaccaaat accaaccaca gatgatctgc caataaatac acgacagtac      3420
     agatttccac aagttcataa ggaggagata aacaagcagg taggagaatt gttagaagtc      3480
     ggaatagtaa agccatctca atctccatat aacaccccta tatggatagt gcctaaaaag      3540
     gaagattcaa agggaaacaa acgctggaga atggttttgg atttccgagc attgaacgat      3600
     aagaccattg gagatgccta ccctttaccg aatattgtag atatcattga tcaattggga      3660
     ggagcccaat acttctcagt ttgcgattta gcctctggat ttcaccagat caaaatggat      3720
     ccttcagata gtcataaaac agcttttaca actcctttcg ggcattatga attcgataga      3780
     atgcccttcg gtctaaaaaa cgcacctgcc actttccaac gtctaatgga tctagtgtta      3840
     accggattac aggggaaaga attattcgtc tatatggatg atatcgttat atatgcctcc      3900
     tcactagagg aacatgaaag gaagtataat aatttaataa acagattacg cgaagcaaac      3960
     ttaaaattac aatacagcca gataaatgcg aatttctaaa atccgaagta acatatttag      4020
     gacacgtgat cggcaaaaac gggattaaac cagaccccaa aaaattggaa gcagtgcaac      4080
     agttccctag accaaaaacg cctaaaaata tcaaacaatt tctcggatta gcgggatact      4140
     atagacgatt cattccaaac ttctcgaagc tcgctaaacc attaacaaat ttgttaaaaa      4200
     atgacacacg atttgactgg acatctgttc aggaagaatc atttgaaatc ttgaagcaga      4260
     aactatgcga agaacccatc ttgcaatatc ccgatttctc aaaacctttt atcttaacaa      4320
     ccgacgcctc aggaatagcc gtaggaggaa ttctatcgca aggggaaata aataaagatc      4380
     gcccaatcgc gtatgcatcg cggaccttaa cagacaatga attaaaatac gatacttacg      4440
     aaaaagaagc attagcaata gtctattgtg ttaaacattt tcgaccgtat ctttatggac      4500
     gaaaatttac cctagtcact gatcataagc ctttactatg gtttaagaat gcacaagatg      4560
     cgaatatgag aatacttcgt tggagattga aactggcgga atacgattat gacgtcgtat      4620
     ataaagccgg aaaaactaac gtaaatgccg atgcattatc aaggaaccca gtagaaatag      4680
     attgcaaaac aattatcaat aggaaaattt taaatcctaa taaaccagaa gacgcagacg      4740
     taatttccaa attgttggaa gaatccgaag aggaagaaga aatggaagag gacgaagatt      4800
     tcgaattata cctatcggac gacgaacaat ccgaaaactt ggcaaatatc gacaattctt      4860
     tcaaggaaaa cgtggattcc ataccgttca cccaagaaga attaaatgaa ccgtcaaaaa      4920
     atcaaattat agagaaggcg ttaattcata atccgcctgc acttcgaaga atacaaacaa      4980
     gaagccaaac aataaaagaa aaggatgatc acctgaaaag atcgcaaaca tattctctaa      5040
     tcaatcccga aaccgtagag ataacagact tggcgaatgg aaatacaccc agtagagaaa      5100
     tagcgaagaa gaagaagaaa aagaagaaga agaaaaagaa gaagaaggaa aagaggaaga      5160
     cgaagaagag gataatgaaa ataacgaaga ggatgactta aggaaactaa acccgtcatt      5220
     attgaaaatc aggtactgaa aagcaatatc atcgattccc gagaattgtt attcttacgt      5280
     aaggataata tagtctactt tgtcgacatc aacggaaagc ctttagactc aggttcacaa      5340
     aaattgttcg aacgaaacga attacctaaa ttaagggatc ttattttagg aaaaactcga      5400
     gctataaagt ataggaacca ttatcacctg gttttaacga ttagcgaagg acaacgagaa      5460
     ggaccaacaa tgaccttaaa acaaataaca tcagctttga aggacctgcg taaaatagca      5520
     gacgaattaa aactggaaac tgttagtata gccaaaaccg aacttatcca gaatatacca      5580
     tggagcaata ttaaaacaca gatacaacta gtcttcgttg acgcgtacac caaaataatt      5640
     atttgcaatg gattaataaa atatccccca aaagatctcc gctcaagtat aatcagtgag      5700
     atgcactgtg cgcccacagg aggacaccga ggtgttacca aaacatacaa tagaattaaa      5760
     cacaactatt attgggaaga cttaaaatca gacgtgcaaa aatacataca acaatgcttg      5820
     caatgccaat tgaaaaaatt agtacgagtc aaaactaaac agcccatgat cattactgat      5880
     acaccaggat ctgcctttga taaggtagcc atggatattg taggaccgtt acctaaaacc      5940
     gagcaaggaa acgaatacat tctaaccttg caggatcaac tgactaagtt ttgcatggca      6000
     ataccgttgc caaatcaaac ctctgagaca attgcggaag catttgttga taaatttatt      6060
     tgtatactag gagcaccaaa agcaatattg actgatcaag gaagaaattt ccttagcgat      6120
     ctaatgaaaa aactcgctaa aatattcaag attcgcaaac tgcgcactac tgcctttcat      6180
     cctcaatcca atggttcgtt agaaagatcc catcacgcac ttggtgaata tttaaaacaa      6240
     tatgcaactg aaggaaaaca gtgggacagg tggatcggtc tcgctacatt caactataac      6300
     accagtgtac acgaagcaac taaacatacc ccatacgaat tagtttttgg gaaaatagca      6360
     agaataccgt ctagctgaac ctttagctcc agaagataaa ctggcaaatt atgatgaata      6420
     tttaataaat ctagttactc agcttcacac catacaagca aatgctcgca gaaaatattg      6480
     tcgaagcaaa aatcaaatca aagaaatatt acgacaggaa gattaaacca caaactttca      6540
     aaccagggga ttacgtattc ttgcagaaag ggcccaaacc aggaaaattt ggagaccaat      6600
     acacaggccc gcatgaagtc ttagaaatat taaatcgaaa taacgttaga attaaaatta      6660
     agaaaaacag tcgcgtagtt catcccaatc gtttaaggat ttctcatatc aagccaacct      6720
     cgaataatta aattttcaga tgatcggaag gatcgccata atgataacat ttatttggat      6780
     tcggaaagct cacggaataa taggctatga ctgtggatca ccgcaggcca atttaaccac      6840
     attatcgctc ttgaacatcg aagaatgcga cattccgccg cagactttaa aaaaggcccg      6900
     agtttatctg caattacttc aagtaatgat taatgaattt agaagcataa aggtacacca      6960
     atgtaaaatc gagattgata gactaatcag aaaatgtggg atgttctctc actctatgga      7020
     tgttcccaat ggcaaatatt catacataca ggaagtatcc caaagagcat gcataaatat      7080
     gcatgtgttt ggtaactacc acctaggagc aacgcttatt acaggcattc atcctaacca      7140
     aacgatcacc aggcctgtaa cgttggcggg acaattagat gccgacggaa catgtcatgg      7200
     gggaacgtat tcagaccctt atggaacatg gacagacgtc accgtcctcg cgactataaa      7260
     gatcacctta caagattata cagccaaagt aaaagtagat accaatagga ttatactccg      7320
     ttcaggagta acctgtgaac tcactactca gtgtatcgat ctagaaggag gagatacatt      7380
     ctggaacgca ttacccgaag acgattgtca acttagtaat tatggcttat tatatgaagg      7440
     agtcgcagga aaaataatcg accaactgga cgatcaaccc atggaaattt atgccctggt      7500
     tgcggatgac atggttttcg ccttaaccag caagggaact atttcaaaat gcggatatac      7560
     gcttacccga acagaacatc ccaaattatt catttttata acaacccctg ataataaagt      7620
     tttcaaaaaa acggaaaacc gcgcttataa tctcgatata ctcacctatg taaattccaa      7680
     atttgtatac gtagagaggc atgtccgtac acaaatgagc cagttatacc gaaatgttct      7740
     cctgcagcaa tgtaacctcg agcaaaaaat gctaaaaaat gccttagcta tagctactca      7800
     gtcaccagat gttttcgcct accatctaat gaagggacca ggatatggcc ctacgagccg      7860
     gagaggtaat acacataata aagtgcgtac cagttgaagt aaaaattgct caaactgaca      7920
     aatgctacga tcagttacaa gtaatacgag acaaccaaac acaattttta acccctcaga      7980
     cacacattct actacaacaa ggaactgaag taaattgtaa taaacttgca cccgccatgt      8040
     atctactagg agattcgtgg tacaaattca cgcccaaacc aatcgaatca ctacccccaa      8100
     tcatcataaa accaaccacc aaattaactt ggaagtatat taatcctgga gcactcgcca      8160
     caagcgggat atacacggaa aaggatttac aggatcttcg ggatcatata atgtttccag      8220
     cagaacggcc tgcagtactt aatactgtag cccgaggaat actaggacaa cctggctctg      8280
     taaacggagg atcattttct aatttattag acgaagcgtc catagaaaaa atagctacat      8340
     ccgcctggga aaaattttgg gatcggtttc tcatttttgg taacatcagc gccggaatga      8400
     tcgggatata catgaccatt agaatcttaa aattgatact agacacagcg gtacacgcat      8460
     ataccctgca taccgtgtat ggatggtcga tacatctact cggagctatt tgggattcca      8520
     tcacccatct tttattacac cttagcacat acggacagaa aaaaccttcg gaggcgagcg      8580
     cccctccccc tgaatgcaat tctgagcata caaccccaag caacgcacta caagaggctc      8640
     caacgaaagg cgcaaatcca aactcaatat atcctcccct tcccacagaa gttgtaccaa      8700
     cttctcaacc aaccttttct ctacaattga aaaattaaaa tcttctttaa tatcatcatc      8760
     aatatctttg caatcagata ataccgaaga atggaatcta atgtcatcga taccagccgt      8820
     ttgacccgtg ggcgccttga ctgcaaggta ctccgaatgg aatcgccgca cctcttttgg      8880
     atacgactca aaactggaga gccgagccta aaggaattaa tggaggaact tgggttccga      8940
     atgaatcgga agtcaagtac cctcatctgt tggccacact tggtgaaaat aaacctggcc      9000
     gtcgcaatca aggaaggcga catatggcac cgaggaataa taacggcagt cgggcggatc      9060
     caaggaattg cccgggtagc cctcagggac gaaggacggg aagtgtggcg gcgattcaac      9120
     gaattataca tcctagaaga tcgcttccag gaattgccgt ggcaagctct cacgtgtggg      9180
     ctagcctata ctggcccgac agtgccaact ctagtatggt ctaagaagat cagggcatta      9240
     tgccaaatcc tcgcagaaga acaagaggga tacttaaaaa tagtacaccc tctgcaggac      9300
     ggggccgcac tcatcaagct ggttatatca cacgagaacg gccacatgca gctgaatctt      9360
     cgagacgccc tcgtaaattt aggatacgca cggatcgata aaagagtcgc ggtaaatatt      9420
     tatccgtctg tcgaaattaa caaatgtaat cataagataa tgcgaaatac attagcagta      9480
     gatagtagta gtagctttca ggaagaacca ttgcaattcc attttaatta agcctaacct      9540
     aagtaagcag ctctaacact agatatgtaa ccttctctcc tttctactat caacaattaa      9600
     atcttataaa acagccttgg agggtcacga taccgaacgc cagtggaaag gaaaaaaaat      9660
     ataaatatct cttctgtcaa tgcctatcag ccttctatat gatcccgatg cattttactc      9720
     ccatcaggca ttactatcag caatcggtta tcattcaatc cgaaactatc taagaatata      9780
     gtagtgccgc acggtccagt tcataagaac aatgcacata aaatagcgtg catcttcgcg      9840
     accaaataga aatcagcaaa acaaagatta ggagagcatc gaaagggatt atgtatgtgt      9900
     gcatccatat gcatatatat tctcgggcaa cgacagagag tatccacacg tgcgaaagga      9960
     taacatctgg ttacttgatg actaacctct ggcattttgt atcggaccac ctgtagtaaa     10020
     cctttttctt ttgtgtttca aatgaactca ctttatggaa aggaaagaac gtgtacatta     10080
     gtacaactgt taagtaatct atacaccaaa aatagtaata ataataaata atataataat     10140
     aaataataat gatagtaacg ataatagaaa agggaaaaat atatataata atagcactaa     10200
     attaattacc ccatactaaa tttattcttc ttccttcaat atctttgata tatgtaaaag     10260
     ggaagaataa ctaaactttt tgttcaaatg cctagatata catatacata taaaaaaagg     10320
     gaaagggggg agagaaaata tataatatat atatatcata aatataatga tgtaattgtt     10380
     aaaaatcatt tcacagaaat atatgtatat gagcacacaa caaatgaaca gaaagaatag     10440
     aaaagataaa taattataat taacacctta agagaccgct ttttatcgct gcagtaagaa     10500
     tttttttttt cctctacaaa agagggaaga gagaaaaaat aacatatata tatataatct     10560
     acatacacat ttataaatag gaaaactcaa gaagaacgaa agaaattaca aagtcctttc     10620
     tttccttctt cttcgcgttg agaaagcgca atagtaccta tcgaaagaga agaattatta     10680
     cttttcaatg caaataccgt gtacccccga tatttgtcta agatgggggg                10730
//
ID   Gypsy-14_PBa-LTR repbase;    DNA;    INV; 2009 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2009
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 698-698 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2009 BP; 529 A; 527 C; 338 G; 612 T; 3 other;
     tgttacgtcg tgacgactgc acgattcttc tctttcgggt atcagttatt agaatttaat        60
     taagcggata aacgggtgac acatgttctg ttacgctgtt agatcgcgac gattacgcaa       120
     ctgatctctt ccggggatcg gttactagaa tttggctaag cggataatcc ctattatcct       180
     aatcgcggaa gaacaacacg tgtacagatg ttttcctcaa cgaaatcata tatatatagc       240
     gcccttaaag gcacggaggc gcactgctac ttcttttttc actcggtcag aacagtttca       300
     gtccgtcagt ttgtcagtaa ttcaatcagt cggtgtcagt cgaaatatat tttttcacca       360
     agtacaagtg accaagtttc ctggcgacac cgcttccacc ttcatcatct cgcaggtccc       420
     aagtctccgg cattccagag taacagtaag ttcagattac acatagtaaa attctctaat       480
     aataattttt gggtctcttc tccttatatt ttctcatttc tcccttacgt cctttctatc       540
     ctctgccgtt ctccttacac ttctactccc ctttcttttt ctttttcttt tctctttctc       600
     tctttgcttk ggccgtcgga cctctcgggc tccctatgcg ttgcggagca ctcagcaggt       660
     tcatggccgc cgaataattc ggcaaaatct gcttcttctc tgtttgcttc ggccgtcgaa       720
     cctcackgac tccctatgcg ttgtggagca ctcagcaggt tcatggccga ataattcggg       780
     aaatctattc ttttttttct ctcctctctt acaattttct ctttcccttc ttmatttctc       840
     tcctccgtcg aatctctcgg cttcctgaaa tatttcagag atagccttaa ggtttacgac       900
     caatgatatt tccttcatat tccaactaat ccatttcttc tagtgaaatc tgcatcatcc       960
     tctctttccg acgctcagag acggaggcga gccctgaaga ggctccgtta tcgtcgcaac      1020
     aagcgagctc gtcgatcagc caactacccc tcgcctagga catccgaggt ttttacacgt      1080
     gctgaagaaa ccacgagttg ttccagcagg agaccctatt cactgtgcat gtcccctccg      1140
     tcctattccc cgatcagacc atccgaatct gggtcacccc cagatttcag cgcactcttc      1200
     ccagagcgcc atgacacgaa tttccaacat ccagatttcc tcaccaagga atccttggac      1260
     gagttctgcg aactccggac tccttcccct cctcccctag acctcagaaa tccgacctcc      1320
     tctccgaaac aaccacacac agataacaaa atataaattt aaatagatta acaacgtaag      1380
     ataaaaatat aaaatataga ttaaatatac taaacacgta agataagaat aattagaatg      1440
     tggacaaaca tacaaatata atcgaattcg tacacggaaa tcgaataatg catccgtaaa      1500
     ttttttagaa catttatatt atatgaattt ccgtacgttc catctcacaa caccttttaa      1560
     aaaacaccct tttaacattt tattatttta tcaaatgtaa atatacctta agcaaatgta      1620
     cttcaacaca agaaataatg acgcggatct tgtagttagt taaacttgta atcgttttta      1680
     aaattatcaa ttatatgtaa aattcaaatt atttgacgtt ttagttattt cctccctctt      1740
     tcattccccg ctatcccaag attcgcacat ggtcctgtcc ctggcaaaag agattaaatt      1800
     ctcttgccta aattacggac cgacggacgc acgtcacgca gtcggagtca tagcgtcttt      1860
     ctcaagacgt tgactcgcac tcgtggatct gcacagtgcg tccgactcgt agggacgcct      1920
     cagcgcgccc acctgcgaga gggtatttgg agcgtccttc ctagcccatc catttcaaaa      1980
     aaaataatta cctcgggctg gacgtaaca                                        2009
//
ID   Gypsy-14_PPo-LTR repbase;    DNA;    INV; 118 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-118
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2984-2984 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 118 BP; 34 A; 22 C; 18 G; 44 T; 0 other;
     tgtaatgtag taggtacatg taaattatta gtctctaagt accgcagttt actgtatatt        60
     taattcagtc gaattacaca tcttgagctt acgcacgtct tttatttcgt acaccaca         118
//
ID   Gypsy-14_RP-I repbase;    DNA;    INV; 6777 BP.
XX
AC   ACPB02011988;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_RP_;
KW   Gypsy-14_RP-LTR; Gypsy-14_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6777
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02011988; Positions    8848    2072.
XX
CC   Positions [4341-4802] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           448..1491
FT                 /product="Gypsy-14_RP-I_1p"
FT                 /translation="MTSLPLTYDVLRCVPEYDGNSYELYHFINTCEELLNT
FT                 YCKPNIKENEHNHWLLLKTALNKIKGPAKIVVYNNNCQTVNEVIAALRKNF
FT                 ADNRTVPDLFSEINSMKAKPREHPLEFLNRLDEKRNVILTRYRLDGISGIV
FT                 LNELTRQLDAHLVRIFLYGIHPSLGAHLQSLQCQALDDTRLKLINDCGIIL
FT                 SQLKLPNTPENNTDTITNNHHNNHRQKKPWRQPHTYSKNNYTSQPFHRYNH
FT                 YYPPNLNHHSPQIPQITHPNYNQLTYPQIQFNRPNPSNFPSKPFNPHSQNT
FT                 VSMKTVRPRHELTITEMNQKNEVSELKKQIETLNKSVSQLTEHFLELGTHH
FT                 HPPDP"
FT   CDS           2130..5231
FT                 /product="Gypsy-14_RP-I_3p"
FT                 /translation="MELDEVESAYTTDSVTNCPDELAEVKKEIPKLIRTDH
FT                 MNKEEKVKIENLIKEYPEIIKRDKDKLTSTTLIKHKINTKDDTPVYTRNYR
FT                 HPIAFKADIHKEIEKLLENKIIQNSNSPYNSPIWVVPKKPDASGKRKIRMV
FT                 IDYRKLNEKTIEDKYPLPNIEDLFGKIGRATYFSAIDLASGFHQIEMDPES
FT                 IPKTAFSTESGHYEFLRMPFGLKNAPPTFQRAMNLIFADTPNVLVYMDDII
FT                 VFSDNLTEHLKHLQKVFQKLKDNNLKIQLDKTEFFKKELLYLGHIISNKGI
FT                 APNPDKVSTIKNFPLPKTTKQIKQFLGLTGYYRKMIKNYAKIAKPLTNALR
FT                 QDGKIDTKDQEYIDSFNTLKEYLQNSPILQLPDFQKEFHLTTDASNLALGA
FT                 VLSQNFEGKDLPIAYASRTLNKAEERLSTIEKELLAIVWSCKHFRPYLYGK
FT                 KFTIYTDHKPLQWLHNMKEPTSKLLRWKCTLLDYEFDVKYIPGKTNLVADA
FT                 LSRIPQEISTIDNPPEERNSENLSEVNPEEVIDQFLREYPPQIDNDNSSLA
FT                 TVHSQESSSEQVTLMDKDKILNIEQHQILIERGSPNIQIIKVFNKNRIKLT
FT                 ISNINIEDQLKEFVLQYLQPKTTYGIYCQTSEILQQEYDHIFLTLQTIITR
FT                 DFSSIKLRRYYKLLIDIEDKPEQLETIGNYHNGKTYHRGISESYEHIRRRY
FT                 YWPGMFKDISDFINQCQTCLKVKYDRKPIKAQYQITPTPNKPFEKIAIDVF
FT                 IFNSQKFLTIIDLFSKKLTVYPIKTHNSIEIQGKLQTYFSLFPLPTTIQMD
FT                 NGKEFQNIGIKNLLSLYNINPYYTTPGHSQSQGTIERVHSTLIELLNAIQI
FT                 ENKNNTIGKNMTLAVIAYNNSIISKLKLTPMEVTFGTNNIAPQNVQVNILE
FT                 EKTRQYHQDLELIHKIIKDNIEKEKIERTQKLNKTREPNINLPKTLHIKST
FT                 KHKKHVPKYFPVKHNPSTKMEKLKNSKTCKEFKIHPNRVKRPRKVTKPLSI
FT                 TGNHDPTLQPSTSRDPNISYSTDSSPDH"
FT   CDS           5158..6753
FT                 /product="Gypsy-14_RP-I_2p"
FT                 /translation="MTPHFNHLLVATLTLATLLTAHQIIDLTKSNGIIALR
FT                 IQPSYIINNTYTYIHNINIEEINEEINQIENNLNLINPKNRNPHYINIINS
FT                 FILYSKDKLSHIYLNKIPRQKRGLINGLGTAISWITGNMDADDKERYDKII
FT                 KQIANNEYSLQHNVQNQISMNQDIINKFNADIDIIRANNNKAKLYLQILSN
FT                 ETTAVQLAEQYNFYLINLQLLINKINDIDNSIEFCKTSIVHSSIITRRELS
FT                 RIVKKTGVQFISDDPEILWQVGSVRCALHDNFISYFLELPLSSDSYETIFF
FT                 LSHPFKHGTETAAIYAHPSMVLRKYNNLYYSKDCILIKNIYYCKKAKEIKN
FT                 NECIENILKNKNHDCKTIVLDNTKPFVKYVNVINKYLFYNYEDIMLNIKNT
FT                 TNITIYSKYCYLLELDENEFIYNISQPYTYWESKLLDLGSISINYPSTTSN
FT                 FSFDNLHKLNLKSRPLEFLEELPIVNTHSIILYVIVGIIIIVLLCYMLSKT
FT                 NFSKRLRKTDTATAVGIKLEIPSGTTLNPSPRTASS"
XX
SQ   Sequence 6777 BP; 2708 A; 1420 C; 962 G; 1687 T; 0 other;
     taactggcgc ccgattgcag gaacagcaat acttcttaac gtttcgatca cttatccaaa        60
     ctttaagtcg accgtagtat ttaccgcaac cctttaaagt tacgaccaat tgtccagctg       120
     aagtggaagc agtacctact acagattgct gtcgaacagt gtggcctatt gccccgctaa       180
     acacctaaaa gaagacaacg tgtgaccagt cgtcccacgg aaaggaagct ggagaaatca       240
     agaacacaac aaagcaaccc ttacacctac tggaccgact catccgaaga cgaactaccc       300
     ctcaagcctt ccaaggagcg tacttcaagg agagcgaagt ctacggtacg gtggaaagct       360
     gctacaacta cagcacttgc agaacaacca acaacaagtg ttactacagc cacatctcca       420
     ggtaactcaa ttgacataac tatcaacatg acgtctttac cactaactta cgatgtactt       480
     agatgcgtac cagagtacga cgggaatagc tatgaattgt accactttat aaacacttgt       540
     gaagaactac taaacactta ctgtaaaccc aatataaaag aaaacgagca taaccactgg       600
     ttacttttaa aaaccgcgtt aaacaaaatc aaagggccag ctaagatagt agtctataac       660
     aacaattgcc aaactgttaa tgaagtcata gctgctctaa gaaagaattt cgcagacaac       720
     cgcacagtac ccgacctatt ttctgaaatc aatagcatga aagctaaacc tagggaacat       780
     cctctagagt ttctcaacag gttagatgaa aagagaaatg taatcttgac tagatacaga       840
     ctagacggaa tttccgggat agtgctaaat gaactgacca gacaattaga tgcccatctc       900
     gttagaatat tcctatacgg aattcatccc tcattaggtg cacatttaca atcattgcaa       960
     tgccaagcat tggatgatac acgattaaaa ttaataaatg actgtggaat aattttaagc      1020
     caattaaaac tacccaatac ccctgagaac aacacagaca caattactaa taatcaccat      1080
     aacaatcaca gacaaaagaa accatggcgt cagccacaca cttattcaaa aaacaattac      1140
     accagccaac catttcatcg ctacaaccac tattaccctc caaatttgaa tcatcattca      1200
     cctcaaatac ctcaaattac acatccaaac tataatcagc ttacatatcc tcaaattcaa      1260
     tttaaccgac ctaacccctc taactttcct agtaaacctt ttaaccctca ttcgcagaat      1320
     accgtgtcaa tgaaaacagt tagaccaaga catgaactaa ccattacgga aatgaatcaa      1380
     aaaaatgaag tcagcgaatt gaaaaaacaa atagaaacac taaacaaatc agtatcacaa      1440
     ttaacggaac attttttaga attaggaaca caccaccacc caccagaccc ttaacctttg      1500
     aactaaaatc catttccaag tccttaccct acttcctaga tgaaaatgca ctcaaaaacc      1560
     tcatagacac aggctcacaa aaaaactaca taaatccaaa catcatccca ccaaacacac      1620
     aaagacacaa agaaaacttt actgtcaaaa cccctacagg agaagaaacc ggaacggaat      1680
     acatattttt aactttagac aagacctttc ctaatacttt agacttacct actaaattct      1740
     atgtcttccc cttctctgac agatacgact tattattagg ttacgaaact cttaaagtta      1800
     ttaacgccac tatagatttt aaggctagtg ttttaaggta tgataatgga catcgcaatt      1860
     tattgtttaa tataaaagat aaaataaatg aaaaaggtaa tgataaaata aataaaacaa      1920
     agaaagtaaa agaaaatata aatttaaaaa agggattaaa tataatcgaa atagaagtaa      1980
     aaaataataa ttgtaagata ggtttaatag ataattacga tttaaaaaat gagaaagtag      2040
     agttaaaaaa gggattaata aaaaataata aaggcaaagc aaaatgctta gtctatgccc      2100
     acgaggtcac gaccatttgt cctgaaccca tggagctgga cgaagtagag tcagcctata      2160
     ctaccgattc cgtgaccaat tgtcccgatg aattggcaga agtaaaaaag gaaatcccca      2220
     aattaataag aaccgaccac atgaataaag aggagaaagt taagatagaa aatttaataa      2280
     aggaatatcc agagataata aaaagagata aggataaact cactagtacc accttaatta      2340
     aacacaaaat taatactaaa gacgataccc ccgtctacac tagaaactat cggcacccca      2400
     tagcctttaa ggcagatata cacaaagaaa ttgagaagtt gctcgaaaat aaaataattc      2460
     aaaacagtaa ctccccatat aattcgccca tttgggtagt cccaaaaaaa cctgacgctt      2520
     caggtaaacg aaagataaga atggtaatag attatcgtaa acttaacgaa aaaaccatag      2580
     aagacaagta tcctctccca aacatagagg atctattcgg aaaaatagga agagcgacct      2640
     acttctccgc tatagattta gcatctgggt tccaccagat agaaatggat cccgaatcaa      2700
     tacccaaaac cgctttcagt acggagtccg ggcattatga attcttaaga atgcccttcg      2760
     ggttgaaaaa tgcacctccc acttttcaga gagctatgaa tctcattttt gccgacaccc      2820
     caaacgtcct agtatacatg gacgatatca ttgtgttctc cgacaactta actgaacact      2880
     taaaacattt gcaaaaagta ttccaaaaat taaaagacaa taacttaaaa attcaattag      2940
     acaagactga atttttcaaa aaagaactac tctatctggg acacataata tccaataaag      3000
     ggatagctcc caatcccgac aaagtaagta ccatcaaaaa tttcccctta cctaaaacca      3060
     caaagcaaat taaacaattt ctcggattga caggatatta cagaaaaatg attaaaaatt      3120
     acgcaaaaat tgctaaacca ttaaccaacg cattaagaca agacggtaaa atagacacaa      3180
     aggatcagga atacatagac tcattcaata cattaaaaga atacctacag aactccccca      3240
     tactccaact accagatttc cagaaagagt tccatttaac cactgacgcc tccaatttag      3300
     cattaggggc agtcctttcg caaaatttcg agggcaagga tttacccata gcctacgcct      3360
     cgagaactct aaataaggct gaagaaaggc tgagcaccat tgagaaggag ctgttagcca      3420
     ttgtttggtc ttgcaaacat ttcagacctt acttgtacgg aaaaaaattt accatatata      3480
     ctgaccataa acctcttcag tggctccata atatgaaaga gcccacgtca aaactcttga      3540
     gatggaaatg caccttattg gattatgagt tcgacgtgaa atatatccca gggaaaacca      3600
     atttagtagc cgacgccttg tcgcgtatcc cccaggagat atccaccata gacaaccccc      3660
     ctgaggaaag aaattctgaa aacctcagtg aagtaaatcc tgaagaagta attgaccaat      3720
     ttctaagaga atatcctccc caaattgata atgataacag cagcctcgct actgtacact      3780
     cccaagagag ctcatccgag caagtaactc tcatggacaa agataaaata ttaaatatag      3840
     agcaacatca aatactaata gaaaggggat cgccaaatat acaaataata aaagtattta      3900
     ataagaatag aataaagtta actataagta acattaatat agaggaccaa ttaaaagaat      3960
     ttgtcttgca atacttacaa ccaaagacaa cttatggaat atactgtcag acctcagaaa      4020
     tattacaaca agagtacgac catatcttcc ttacgttaca aacaattata actagagact      4080
     tttcttctat taaactgcga cgatactata aactcctaat agacattgag gacaaacctg      4140
     agcaattaga gactatagga aattatcaca atggtaaaac ttatcatcgc ggtatatccg      4200
     aatcctatga acatatccgc cgccgatatt actggcccgg catgtttaag gatatatctg      4260
     actttataaa tcagtgtcaa acctgcctaa aagtgaaata cgacagaaag cctataaaag      4320
     cccaatacca aattacacca acccctaata aaccttttga gaaaatagcc atagacgtgt      4380
     tcatttttaa ctctcaaaag tttttaacca taatagatct cttcagtaaa aaactgactg      4440
     tgtacccaat taaaacccat aactcgattg aaattcaagg caagcttcaa acatatttct      4500
     cactgttccc attacccaca acaattcaaa tggataacgg gaaagagttt caaaacatcg      4560
     gcattaagaa tctcttgtcc ctctataaca ttaatcctta ttacactaca ccaggtcatt      4620
     ctcagtctca aggtacaatc gaaagagtac actctaccct tattgaatta ttaaacgcca      4680
     ttcaaataga aaacaaaaat aatacaattg gaaaaaacat gacactagct gtcatagcct      4740
     acaacaatag cataatctcc aaattaaaac tcacccctat ggaagtgacg ttcggtacta      4800
     acaacatcgc accccaaaac gttcaggtta atatactcga agaaaagacg agacagtacc      4860
     accaagacct cgagctaata cacaaaataa taaaagataa tatcgaaaag gaaaagatcg      4920
     aaagaaccca gaaattaaac aagacacgag aacctaacat aaaccttccc aaaacactac      4980
     acataaaatc aaccaaacac aagaaacatg tccccaaata ctttccagta aaacacaacc      5040
     catcaaccaa gatggaaaaa ctcaaaaact ccaaaacttg caaagaattt aaaatccatc      5100
     caaacagggt aaagagaccc agaaaagtaa caaaaccact ttctattaca gggaaccatg      5160
     accccacact tcaaccatct actagtcgcg accctaacat tagctactct actgacagct      5220
     caccagatca ttgatctaac caaatccaac ggaattattg ctttacgaat acagccatcc      5280
     tacataatta acaatacata cacctacata cacaacataa acattgaaga aattaacgaa      5340
     gaaatcaatc aaatagaaaa caacctaaac ttaattaacc ccaagaatag aaatccccat      5400
     tatatcaata taattaattc tttcattcta tactctaaag acaaattgtc acatatatat      5460
     ttaaataaaa taccaagaca aaagcgtgga ctaattaacg gactgggaac ggcaatttcc      5520
     tggataaccg gaaatatgga cgcagatgat aaagaaagat acgataaaat aattaaacaa      5580
     atagccaaca acgaatattc cctacagcac aacgtacaaa atcaaatatc tatgaatcag      5640
     gacattataa acaaatttaa cgccgacata gacatcatac gcgcaaacaa taacaaagca      5700
     aagttgtatt tgcaaattct ttctaatgag accacagctg tgcaactagc tgagcaatac      5760
     aacttctatt taataaactt gcaattacta ataaataaga taaacgacat agataacagt      5820
     atagagtttt gtaaaaccag tatagtgcat tccagtataa tcacaaggag ggaacttagt      5880
     agaatagtaa agaaaacagg tgttcaattt ataagtgatg atccagaaat attatggcaa      5940
     gtaggctcag tcagatgtgc cctacatgat aatttcatat cttatttttt agaactccct      6000
     ttatcttctg actcatacga aacaatattc tttttatccc atccttttaa acatggtaca      6060
     gaaaccgctg caatttatgc gcatccctct atggtcctta gaaaatataa taatttatat      6120
     tatagcaaag attgtatatt aattaagaat atatattatt gtaaaaaggc taaagaaata      6180
     aaaaataatg aatgtattga aaatatattg aaaaataaaa accatgattg taaaactatt      6240
     gtattagata atacgaaacc atttgtaaaa tatgttaatg taattaataa atacttgttt      6300
     tataattatg aagacattat gttaaacatt aagaatacaa ctaacattac aatctactcc      6360
     aagtattgtt atcttttaga attagacgaa aatgaattta tttataatat ctcccaacca      6420
     tatacttatt gggaaagtaa attgttagac ttaggtagca taagtataaa ttatccttct      6480
     actacttcta atttttcttt tgataattta cacaaattaa atttaaaatc aagaccctta      6540
     gagtttctag aggaactgcc tattgtaaac acgcactcta taatacttta tgtaatagtt      6600
     ggtataatca taattgtttt attatgttac atgctatcaa aaaccaattt ttccaaaaga      6660
     cttaggaaaa ccgacacagc cacagcagtt ggtataaaat tggaaatacc atccggtaca      6720
     accctcaacc cttcgccgag gacggcttca tcttaaggag ggaggagtta cgaacgc         6777
//
ID   Gypsy-14_RP-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   ACPB02011988;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_RP_;
KW   Gypsy-14_RP-I; Gypsy-14_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02011988; Positions    2071    1864.
XX
SQ   Sequence 208 BP; 69 A; 45 C; 26 G; 68 T; 0 other;
     tgttcatacc gataaccacc tgcatagata agatgctcgc aaatatgata tatacccctg        60
     gaatcaagag atgacagaca cacccagact atacgttata cgtgacacat tctactttta       120
     attactttaa attgttgtac ttattcccca gtgttccttt caaaataaag ttctttttta       180
     aaaaacggac tttcagtctt cttaaaca                                          208
//
ID   Gypsy-14_SI-I repbase;    DNA;    INV; 5120 BP.
XX
AC   AEAQ01023414;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_SI_;
KW   Gypsy-14_SI-LTR; Gypsy-14_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5120
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023414; Positions    5586     467.
XX
CC   Positions [2554-3096] - Reverse transcriptase
CC   Positions [4117-4593] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           640..4959
FT                 /product="Gypsy-14_SI-I_1p"
FT                 /translation="MEQLGQIPTIKQKIATASRAVIVVMHKFIFEEDGDRN
FT                 NRRRLREFRGFEFSDDSAEFRAKLQYAMRFSIGDLISICNILDIAYNGNAE
FT                 QLRERIVRALMDIGSLQSVHDEDEDDEEDVDNEGDGNNVENDTYGINDEDN
FT                 DEDADADEEGGGTVSVERGNNRRSERDRRQRNANNDSKQFTLSYKDVEDSV
FT                 RAFNGTDSYPIERWINDFEEAATMFDWDDLHKVVFAKRSLKGVAKLFIQSG
FT                 GIIKTWKKLKNALIEEFATKISSAELHKMLEKRRIKKEETVQEYFLAMREL
FT                 ASRGAVEVDALIHYVINGINDEIGNKMILYGAKTVREFKDKLETYEKIRKS
FT                 QADKTSKYTKNRDEWTRNAGRKFSREDGRKTTDSREDGALIRCFNCGISGH
FT                 HARNCDKKSLGKKCFSCNKFGHEAKNCTDKRVSGSNSNAEQAVNLVSVSLT
FT                 NVIKQVVINNENLRALIDTGSPASLMREDAFTKLKKFELVQSTRVFSGFGG
FT                 GESKAMGYFQAVVLIDGDDFPLTFYVVPYETISVEVIIGRDIIEQANLNFS
FT                 QEGVTIYKKLETDFLAHINIPEDSQADIEAIPDAETKNRVKKLIIDYRPKK
FT                 CKTTGIKLKITLKDEKPIFQRPRRLALPEKKIVEKQVEEWIRDGIIEPCSS
FT                 EYASPVVVVKKKDGSPRVCIDYRPLNRIIERDRHPLPLIEDQVDKLKGALL
FT                 FSKLDLKNGFFHVEVDEESRKYTAFITHEGQYQFLKAPFGLSNSPPVFQRF
FT                 ISQVFRPLVNDGIMTLYLDDIIIFAANFRQAADRLEAVLITARDYGLELNA
FT                 KKCEFMKERIEFLGQIIENGTVSPSPEKVKAVTQFPEPTTIKEVQSFLGLT
FT                 GYFRKFVSGYSMTAKPLSDLLRKDIMFQFGEVEKEAFNKLKQILSSEPVLQ
FT                 IFDQTLETELHTDASQDGLGAILLQRSRIDGKLHPVQYMSRKSRQAERNYK
FT                 SYELEVLAVIEALEKFRIYLLGLKFKIVTDCAAFTQTMRKKEVSPKIWRWA
FT                 EKLEDFDYTLEHRSGTKMRHVDALSRNAVMTIIEDGILARVKAAQADDSEL
FT                 RMIIETLKLKPDNKYTLMGGVLYKFVEGRDVLVVPNRMQNEVIQAVHHRGH
FT                 LSVKRTEDAIRKEYFMPDLKKKVEKLIANCIPCILANRKQGKQEGELHPLP
FT                 KGDVPLHTYHIDHVGPLESTSKKYNHILVVIDSFTKFTWLYPTKSTTSQEA
FT                 IKKLESQQQIFGNPACIISDRGTAFSSKEFQDYCDNEGIKHVLITTGLPRA
FT                 NGQVERINRTIIPILTKLSLEDPTKWYRHVRQLQNILNSSYQRSINTSPFE
FT                 LLTGVKMRCKEDLRLKEILEQALQEQFNDERTSLRSKAKEHILKIQQENCK
FT                 TFNKHRKASRKYKVGELVAIKRTQVCPGRKLRAKYLGPYVVTKVKYNDTYD
FT                 VKRANPGEGPGCTSTCAEFMKSWSSV"
XX
SQ   Sequence 5120 BP; 1890 A; 850 C; 1238 G; 1142 T; 0 other;
     atattggggg ctcgtccgtg ccaaaaaaca agccaaagag aaagtgctaa tgagtgttta        60
     aaaagaagcg acgaaagacg aagaacgagg caatacgaag aataggaaac gacgaaaaga       120
     cgaaagacga aggaaagacg gaagacgaag aaaagacgaa agacgaagga aagacgaaag       180
     acgaagaaaa gacgaaagac gaagaaaaga cgaaagacga agaaaagacg aaagacgaag       240
     caaagacgac agacgaaaaa cgaaaggacg aaagacgaag gaaagacgaa aaacgtgaag       300
     aaacagtcaa gaaaacgagt aagcaagaat cgagaacgtt cgagaaaatc agggaaaaac       360
     gcaagacgag agacaaagag gagcagacgg agtagggaaa agagagacaa acaacgagta       420
     ggtaagaatc aagaaccttc gagaaaacgg gggaaagacg tggaaaaaaa aacggagtag       480
     gaaaaaagag agacaaacga ataggcaagg attgagaaca ttccagaatc caaaaagaga       540
     acatatatac gaacaacgca cgtgtgaccg agaacattcc agagccgaac gcaagaactc       600
     caattgccgt ttgtgaaagt aaaatcgata gacgaaatta tggagcaatt agggcaaata       660
     cctacaataa aacaaaaaat tgctacagca tctcgagcag tgatagtggt catgcataaa       720
     tttattttcg aggaagacgg agataggaat aaccggcggc ggttacgaga gttccgcggg       780
     tttgaattta gcgacgactc tgccgagttc agagctaaac ttcaatatgc tatgagattt       840
     tcaataggcg atttaatatc aatttgcaat attcttgaca ttgcatacaa cgggaatgct       900
     gagcaattaa gagagcggat agtgagggcc ctgatggata taggatcttt gcaatcggtt       960
     cacgacgagg acgaggatga cgaggaggac gttgacaacg agggtgatgg aaataacgtc      1020
     gagaatgata cctacgggat caacgatgaa gataatgacg aggatgctga tgccgacgaa      1080
     gagggaggag gcacagtcag tgtggaacga ggaaacaatc gtcgatctga aagagatagg      1140
     agacaaagaa atgcgaataa tgactctaaa caatttactt tgagctataa agatgttgag      1200
     gattcggttc gtgcattcaa tggaaccgat tcgtatccaa ttgaacgatg gattaatgat      1260
     tttgaagaag ccgctaccat gtttgactgg gacgacctac acaaggtagt ctttgcaaaa      1320
     agatcgctaa aaggcgtagc caaattattc atacagagcg gaggaatcat taagacgtgg      1380
     aagaaactga agaacgcgtt aatagaagag tttgctacaa aaatctccag cgccgagctg      1440
     cataaaatgc tagaaaaacg aagaataaaa aaggaagaaa ccgttcagga atatttttta      1500
     gcaatgagag agctggcttc aagaggtgca gtggaggtag acgcattgat tcactatgtg      1560
     attaacggca tcaacgacga gataggtaat aaaatgattc tatatggagc gaaaaccgtt      1620
     cgtgagttta aggataaact cgagacctac gaaaaaataa ggaaaagtca agcggataaa      1680
     acatcgaagt acacgaagaa tcgagacgaa tggacgagga acgcgggcag gaaattctcg      1740
     cgcgaggacg gaagaaagac gaccgacagc cgggaggacg gagcgctaat acggtgcttt      1800
     aattgtggta taagcggaca tcacgccagg aactgcgata agaagtcgct aggaaaaaaa      1860
     tgtttcagtt gcaataagtt cgggcacgaa gcgaaaaatt gtactgacaa aagagtaagc      1920
     ggttctaatt cgaatgcgga acaagcggtc aatctggtaa gcgtgtcctt gactaacgtt      1980
     atcaagcaag ttgttattaa taatgagaat ttgagagcgc tcatagatac gggaagtcca      2040
     gctagtctaa tgcgggaaga cgcgtttaca aagttaaaaa aatttgaact ggttcaatcg      2100
     acgcgcgtat tttctggatt tggaggtggc gaatctaaag ccatgggcta ttttcaagct      2160
     gtagttctta tagacggtga cgactttcct ttgacgttct atgttgtacc ttatgagaca      2220
     ataagtgtag aagtaattat tggtagggat ataatagaac aagctaattt gaattttagt      2280
     caagaaggtg tgactattta taaaaaattg gaaactgatt ttcttgccca tattaatatt      2340
     ccagaagatt cgcaagcgga cattgaagcc attccggacg cggaaacaaa gaatagagtt      2400
     aaaaaattaa taatcgatta taggccgaaa aaatgtaaaa caacgggaat taaacttaaa      2460
     ataacgctta aagacgaaaa gccgattttt cagagaccac gtagattagc tttgccggaa      2520
     aagaaaatag ttgagaaaca ggtagaagaa tggatccgag atggtataat tgagccatgc      2580
     tcttccgaat atgcgagtcc ggtagttgta gtaaagaaaa aagacgggtc tccacgagtg      2640
     tgcatcgact atcggccact caatagaata atagaacgag ataggcatcc gttgccattg      2700
     atcgaggatc aggtagacaa attaaagggt gcactactat ttagtaagct tgacctcaaa      2760
     aacggatttt ttcatgtaga agttgacgaa gaaagtcgaa aatatactgc atttattaca      2820
     catgaaggtc aatatcaatt tttaaaggct cctttcggtt tgtctaactc tcctcccgta      2880
     ttccaaagat ttattagtca agtttttcga ccactagtta acgacggaat aatgacgctg      2940
     tatttagacg acattataat ttttgcggcc aattttaggc aagcggcgga cagattagaa      3000
     gccgtgctaa taacagcacg cgactacggg ttagagttaa atgctaagaa atgcgagttt      3060
     atgaaagaac gtattgaatt tttaggtcaa ataatagaga atggaacggt atcgccatcc      3120
     ccggaaaaag taaaagcagt aacacaattt ccagaaccaa cgacgattaa agaggttcaa      3180
     agcttccttg gtcttacggg atattttcgt aaatttgtta gtggatattc aatgacggcg      3240
     aaacctttaa gcgaccttct gcgtaaagat ataatgtttc aattcggaga agtagaaaaa      3300
     gaagctttta ataaattaaa gcaaatatta agcagtgagc ctgtgttaca gatttttgat      3360
     cagacactcg agacagagct gcacaccgac gccagtcagg atggattggg cgcaatatta      3420
     ttgcaacgat cgcgtataga cggtaaatta catccggtac aatatatgag tcgtaaatcg      3480
     cgacaagccg aaagaaatta taaaagttac gagttagagg tgttagccgt gatagaggca      3540
     ctcgagaaat ttcgtatata tctacttggc ttaaaattta agatagtgac agactgcgca      3600
     gcgtttacgc aaaccatgcg gaagaaagaa gtctctccaa aaatctggcg atgggctgaa      3660
     aagttggaag attttgacta tacattggag cataggtcag gcactaaaat gagacatgtc      3720
     gatgctttaa gcaggaacgc agtcatgacg ataatcgaag acggcatctt agcaagagta      3780
     aaagcagctc aagcagatga ttcagaatta agaatgataa tagagacatt gaaattaaaa      3840
     cccgataata agtatacgtt aatgggaggt gtgctgtata aattcgtcga gggtagagat      3900
     gtattggtag ttccaaatcg tatgcagaac gaagtcattc aagcagttca tcacagggga      3960
     catttatcgg taaagagaac agaagatgct attcgaaaag aatactttat gccggattta      4020
     aagaagaaag tggagaagtt aatagcaaac tgtatccctt gtatacttgc caatcgaaag      4080
     caaggcaaac aagaaggtga actccatccg ttacctaaag gtgatgtgcc tttgcatacg      4140
     tatcacatag accatgtagg tcccttggaa tccaccagca agaaatacaa tcacatttta      4200
     gttgtgatag acagcttcac taaattcact tggctgtatc caacgaagag tacgacttca      4260
     caagaagcaa ttaagaaatt ggagtcgcaa cagcaaatat ttggcaaccc ggcctgcatc      4320
     atttcagaca gaggaacagc attctcgtcg aaagagtttc aagattattg cgacaacgaa      4380
     ggaattaaac atgtcctgat tacgacgggc ttgccgagag ccaacggaca ggtggagaga      4440
     attaatcgaa ccataatccc aatactcacg aagttgtcac tggaagatcc taccaagtgg      4500
     tatcgccatg tgcgccagct acagaatatc ttaaattctt cttatcaaag aagcattaat      4560
     acaagtccgt tcgaactgct aacaggagtg aaaatgcgat gtaaggagga tctacgctta      4620
     aaagaaatcc tggagcaagc cttacaagaa caatttaatg atgaacgcac ttctcttaga      4680
     agcaaagcta aagagcacat attaaaaatt caacaggaga actgtaaaac gttcaacaaa      4740
     catcggaagg catcacggaa atataaagtc ggagaattag ttgcgattaa acgcactcaa      4800
     gtgtgtccag gacggaaatt acgcgcgaag tatctaggac cgtacgtagt aacaaaagta      4860
     aaatataacg atacatatga cgttaaacga gcaaatccag gagagggtcc aggttgcact      4920
     agtacttgcg ccgaatttat gaaatcctgg tcgagtgtgt agcaattact cgaggcgaat      4980
     aattaatcaa gtaggccgaa ttttggataa ataataataa taacaataat gatacagtta      5040
     gtaattattc gaggcgaata attagtcagg agggccgagt gtgggtttag agatagttat      5100
     cttgagtcga gctagggcga                                                  5120
//
ID   Gypsy-14_SI-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   AEAQ01023414;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_SI_;
KW   Gypsy-14_SI-I; Gypsy-14_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023414; Positions     466     258.
XX
SQ   Sequence 209 BP; 66 A; 36 C; 51 G; 56 T; 0 other;
     tgtactcgct tgttacgggc ttgagcttag gtatgtaacg gtatgtaagg gttataacaa        60
     aaaagcaggc gaaaaaggaa gcaggcagtt gttaaccgac agttgaatat gacggtcgat       120
     cgagcgtgcg ttcccgaaat cttgtaacca tgagatagcg aaatacattt atattaattg       180
     aagaagagtg tctccctttt aaccctaca                                         209
//
ID   Gypsy-14_SiCu-I repbase;    DNA;    INV; 4361 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4361
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5038-5038 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..4300
FT                 /product="Gypsy-14_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTIEPKREKKPPRQILQSFKMGTIGHLKAFEPSTDDF
FT                 EMWTTTFKSFLVANGVDESEAKNENQVRGILLSSLGLPTVTLLHNLMAPDS
FT                 PSAAKVKVILDTLKGHFQPAPKAIAERYKFMGRRQQHGETVHQFLAALRTL
FT                 ATHCKFSDLEDRLRDQFIFGLNSESAQRSLFTKDDSIVLKDVLSLAVAQEA
FT                 ADTSTALIRGGHQPAAQDSQVNKTGRVKSNGQKSRNRHHDKGEKPKNEKKN
FT                 NNSSSDSCSRCGYRDHDKNSCPNKDKTCNKCGLKGHFAQMCKTKGKSTNVV
FT                 SIGTMNKVKRVNSQRQNEDAPLTLKVKIGGKEDTMELDTGCEQSVLSKKAW
FT                 EKQGSPELKPSRMVFKTYTGERFRAMGEFETTIQHNGQEVNHRFPVIEKGT
FT                 SLFGKNLLKKIKINWDQIVETQLHSVTSESVQSATLKSLMTEYKDVFQLPS
FT                 ATDRIRNFRAKIIMNDEAQPKFLKARPLPYATRSKVDAELENMERTGVIEK
FT                 IDYSEWASPLVVVPKPDGRVRITGDFKNTVNSQLCVTQYPLALPEDIFASM
FT                 SGGKLFSKLDGSNAYHQLELDQSCKKFCVINTHRGLYRYNVLPQGIASSPA
FT                 IFQHFMDVMLKDIPRSGSYIDDTIATAATHEEHLKTLKAIFECMRQYNFKL
FT                 SKDKCELMKDSVIFLGHKISKNGIETSDEKVKAIMKIPVPKDKSEVRSFLG
FT                 LVQFYGKFMKNLSECCSPLYKLTEHDSVWKWTKECQRAFEEVKRLLTSTPI
FT                 LAHFDPXTPIGLTCDASAIGISSILYHKYPDGTERPIQFASKKLSPTQQRY
FT                 SQIEKEGLAIVFGLEKFYKYLCMKRFELITDHAPLLKIFGPKTQLPSYVAT
FT                 RLHHWSVYLSQFQFDIKYRKSSDHGNADALSRNLPQDEGHHNNNETEKVIH
FT                 QITTEQLNLLPVTATVIRKASSRDKVLSRVFEYVKSGWPVQLAQEENELKP
FT                 YFHHRNELTIVQDVLMWGIRVLIPASLKNKILQQLHECHFGIVRMKAMARS
FT                 HVWWPGIDSEIEMMCKQCTLCNENKPDPMSAPLHPWQYPERPMQRIHADLA
FT                 GPLFGKMWLIIIDAHSKWPEVYDMRSNTTAKEVKEKLMDFMSRWGIPEQLV
FT                 TDNGRQFVAEEMASFCKRNGIKHTTSSVYHPRSNGEAERFVRTFKEAMRAD
FT                 DVDVNMRALRFLLYYRVTPHATTGSSPAELLQGRKLRTALDLVRPSAERNV
FT                 MQAQARQEKSYNQGVKMRSFQPGDAVWVKTFSRNLEKWTRGKVEAAIGPVT
FT                 YMVEVNGSQMRRHVDQIRAAHSKQPESKKIEETTQQQHANEMVITTSPQRI
FT                 QTPCPSSPPQASPHQNETTPAAAAETSPIRPPSVVAHPESPKARPRRDRKP
FT                 VERFQAGARK"
XX
SQ   Sequence 4361 BP; 1419 A; 906 C; 1017 G; 1017 T; 2 other;
     taaatggcga cgagttaact ttttaaaagt gtagttttca gtgactggaa aaaaaacgaa        60
     aacttccagt aacaagtttt tgtgaaatag acttgccctg aaatcaagtt tatgtgattt       120
     tttgagaagt tctgagactc aaagtaagat ctcacaacgc cccaagactg catccagctg       180
     tatgacgatt gaaccgaaac gtgaaaagaa accgccccgt caaatcctcc aaagtttcaa       240
     gatgggtacc ataggacatc ttaaagcttt tgaaccttca actgacgatt ttgaaatgtg       300
     gaccactaca ttcaaatcct ttctggtagc aaacggagtg gatgaatccg aagccaagaa       360
     tgagaatcaa gttcgtggaa tcctgctttc ttcacttggc ctaccaactg taacgcttct       420
     tcacaatttg atggctccag actcaccgag tgccgcaaaa gtgaaagtta tcttggatac       480
     gctgaaaggg cacttccaac ctgctccaaa agctatagcc gagcgttaca aatttatggg       540
     gaggagacaa cagcatggag agactgtaca tcagttttta gcagcactgc gtactctagc       600
     gacccactgc aaattcagtg atctggagga tcgcctgcgt gatcaattta tttttggctt       660
     gaacagtgaa agtgcacaaa ggtcactatt cactaaggac gacagcatag ttttgaagga       720
     cgtgttgtca ttggcggtgg cacaggaggc agctgacacg agcactgcac tcattagagg       780
     tggacatcag ccagcggctc aagatagcca agtgaacaag acaggaagag tgaagtcaaa       840
     cggccaaaaa tcacgcaaca gacatcatga caaaggtgaa aaaccgaaaa atgagaagaa       900
     aaataacaat agttccagtg actcgtgttc tcgttgtgga tatcgtgatc atgataagaa       960
     cagttgtccc aacaaagata aaacctgcaa caagtgtggt ttgaagggtc actttgcaca      1020
     aatgtgtaaa acgaaaggaa aatcaacaaa tgttgtttcg attggaacta tgaataaagt      1080
     gaaacgtgtg aactcccagc gtcagaatga agacgctcct ctcaccctga aagtgaagat      1140
     tgggggaaaa gaagacacca tggaactaga cacgggttgt gagcagtcag tgctctccaa      1200
     gaaagcttgg gaaaagcaag gatcaccgga gctgaaaccg tcacgaatgg tcttcaagac      1260
     ttatacgggt gaacgattcc gtgccatggg ggaatttgag actacgatcc agcacaacgg      1320
     acaagaagtg aaccaccgtt ttcctgtgat tgaaaagggg acttcattgt tcggcaagaa      1380
     tttattgaag aaaataaaga taaactggga ccagattgtt gagacacagt tacacagtgt      1440
     aactagtgaa agtgtgcaaa gtgcaacttt aaaaagtctg atgactgaat acaaagacgt      1500
     atttcagctt ccttcggcta cagaccgcat ccgtaatttt cgtgccaaaa tcatcatgaa      1560
     tgacgaagca cagccgaaat ttttgaaagc tagaccgtta ccttatgcca caagaagcaa      1620
     agttgacgca gaactggaaa acatggagcg aactggtgtg attgaaaaga tcgattacag      1680
     tgaatgggca tctccactgg ttgttgttcc aaagccagat ggtcgtgtca gaattactgg      1740
     tgactttaaa aacacagtta acagtcaact gtgcgtcacg cagtatccat tagcccttcc      1800
     cgaggacatt ttcgcctcaa tgtcaggtgg aaagttattt tccaagttgg atggcagcaa      1860
     cgcttaccat caactggaac tcgaccaatc atgcaaaaag ttttgtgtga ttaatacaca      1920
     tcgtggcctg tacaggtaca atgtgttacc tcagggaatc gcgtcgtcac cagccatttt      1980
     ccagcatttt atggatgtta tgctgaaaga tattcccagg agcggatcgt atattgatga      2040
     tacaattgct acagcagcta ctcacgaaga gcacctgaaa acgctgaaag caatttttga      2100
     gtgtatgaga caatacaact ttaaattgtc aaaggacaag tgtgaactga tgaaagactc      2160
     cgtgatattt ttgggtcaca aaatatcaaa gaacggaatt gaaacaagtg atgagaaagt      2220
     gaaagccatc atgaaaatac ctgtgccaaa agacaaaagt gaagtgcgat catttttggg      2280
     acttgtccaa ttttatggaa agttcatgaa aaacttgagc gagtgttgtt ctccgctata      2340
     caagttgact gaacacgatt cagtttggaa gtggacaaag gagtgccaaa gggcatttga      2400
     agaagtcaaa cgactgctga cctccactcc aatattggca cattttgacc ctgawactcc      2460
     gataggactg acttgtgatg cttcagcaat tgggatttcc agtatcctgt atcataagta      2520
     cccggacggt actgagcgac caatacaatt tgcatcaaag aaactttccc cgacgcagca      2580
     gcgttattct caaatagaaa aggagggatt ggcaattgta tttggactgg aaaagttcta      2640
     caagtatttg tgtatgaaac gatttgagct gatcactgat cacgctcccc tgctgaagat      2700
     tttcggaccg aaaacacaac tcccatcgta tgtggcaaca cgtttgcatc actggagtgt      2760
     gtacctgagc cagttccagt ttgacattaa atatcggaaa tcgagtgatc atggaaatgc      2820
     agacgcgtta tccagaaatc taccacaaga tgagggccac cacaacaaca atgagactga      2880
     aaaagtaatt catcaaatta ctactgagca attgaacttg ttacctgtca cagcaacagt      2940
     aataaggaag gcatcatcac gcgacaaagt gctttctcgt gtgtttgagt acgtgaaaag      3000
     tggttggcca gtgcaattag cacaagaaga aaatgaactg aagccgtatt ttcatcatag      3060
     gaatgaactt acgatagtgc aagatgtgct catgtgggga atacgtgtac tgattccggc      3120
     atctctgaaa aataaaattt tgcaacagtt gcacgagtgc cattttggaa tagtgcgtat      3180
     gaaagccatg gctagatccc atgtttggtg gccaggcatt gacagtgaga ttgaaatgat      3240
     gtgcaaacag tgtacattat gcaacgaaaa caaacccgac cccatgagtg caccgttaca      3300
     tccgtggcag tatccggaac gacctatgca gcgtatacat gcagacctcg ctggaccttt      3360
     atttgggaaa atgtggctca tcattattga cgcacattcc aaatggcctg aggtgtatga      3420
     tatgcgcagc aatacaacag caaaagaagt taaagaaaag ctgatggatt tcatgtcgag      3480
     atggggcatt ccggaacaac tggtgactga caacggacgg caatttgtag ctgaggaaat      3540
     ggcttcattt tgcaagagaa acggcatcaa gcataccaca tcatccgtgt atcatccccg      3600
     atcaaacggc gaagcggagc gctttgtgcg cacatttaaa gaagccatgc gagctgacga      3660
     tgttgatgtt aacatgcgtg ccttgagatt tttgttatat tacagagtga cgccacacgc      3720
     cactacaggc agcagcccag ccgagctact tcaaggcaga aagctgagga cggcgttgga      3780
     tttggtacga ccaagtgcag agagaaacgt gatgcaggcg caagcgaggc aagagaagag      3840
     ctacaaccaa ggcgtgaaaa tgagaagctt ccagcccggc gacgccgtgt gggtgaaaac      3900
     attctcccgc aaccttgaaa agtggacgag agggaaggta gaggcagcca ttggccctgt      3960
     tacatacatg gtggaggtta acggttccca aatgcgacga cacgtggacc agatcagagc      4020
     agctcacagc aagcagccag aatcaaagaa aattgaagaa actactcaac agcaacatgc      4080
     taatgagatg gtgataacga catcacctca gagaatccaa actccatgtc catcctctcc      4140
     accacaagca tcacctcatc aaaatgagac gactccagca gcagcagctg aaacgagccc      4200
     gataagacca ccatcagttg tggcacatcc agaatcacca aaggcaagac cgagacgtga      4260
     ccgtaagcca gtcgagcgct tccaagcagg agcaagaaaa taaaatattt tctagwtttt      4320
     tccttttgaa ataaattgtt aaaattagaa aaggaggata a                          4361
//
ID   Gypsy-14_SiCu-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-352
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5091-5091 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 352 BP; 117 A; 63 C; 63 G; 109 T; 0 other;
     tgtggtgtat gtaaataccc acatgaaatg ataatgtaaa tgaacctaaa ttgagtttga        60
     tttaataatt gataatatga atgtctttgg atgatttggt tatgtgtttg agaagacagt       120
     ctccactagt ctccagtgag ctgtcttcag gtaagattga gttaatgtac acgatacatg       180
     cgagtcatga gactcactcc tcttctgtct tctgtactga atgtacgaaa taaaacttac       240
     ttgttaattc actgaactac acaggcaaac aacccatgca ttgattagac tggcattgca       300
     tataacatag cactgctcag caccaaataa aataatatgt gcatacacca ca               352
//
ID   Gypsy-14_SiOr-I repbase;    DNA;    INV; 3991 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-3991
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 350-350 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..834
FT                 /product="Gypsy-14_SiOr-I_1p"
FT                 /translation="MQTNNPEASTTQTNNSNQSTNNQPINELCRVSFKPPE
FT                 FWKAEPELWFYRIECQFRTAGISTDDCKFDYTVASLNCETLTEVADLIRSP
FT                 PATDKYSALKNRLISRFADNDTVRIQKLLAGVALGDQKPSQLLHKMQSLNN
FT                 NKLQDSVIKTLWLEQLPSTMKAILMVSGEDLTKLAEIADKINETLDRPANL
FT                 YGMSSLEDQINQLKQQVNKLTTELKNKPQKQGSSQSTNENCWYHENFGKKA
FT                 KKCEKPCKFMGNEAGSR"
FT   CDS           807..3989
FT                 /product="Gypsy-14_SiOr-I_2p"
FT                 /translation="IYGKRSRESIDAAIRSPTTPSRLFISDKKFRLQFLID
FT                 TGADVSVLPLSRFPGNSDPNFSLLSANGSLIKTFGKKELTIDLNLNRKFTW
FT                 TFVIAQVTHAIIGADFLAHFGIQVDLKHRKLIDSYTTTTQYCQVRDTEVLG
FT                 VKAIHLADIITELLTKYSNILGPICQTQTEINTFHFIETKGPPVYSKPRRL
FT                 SPDKLSIAKEEFQKLIEQGILRPSSSNWASPLHLTKKKNGTWRVCGDYRRL
FT                 NAVTKPDRYPIPHIQDITYDLHNKSIFSTIDLTQAFHQIPVNTDDIPKTAI
FT                 ITPFGLFEYVKMPFGLRNAAQTLQRFMDHIFRDLSYVYVYIDDILIASRTR
FT                 EEHQQHLDTVFNRLSKYCLTINLEKCKFGEKEVTFLGTIITSKGIRPLPEK
FT                 VEAIRNFPNPTTIQELRQFLGMINFYRRWLPNAAQEMLPLTNLLQNVKSKS
FT                 AKIDWNQELEDAFKKIKQLLADSTELIYPDPNDKLALAVDASSKAIGGVIH
FT                 QATQHGIVRPISFFSRKLSTTEQNYSTYDRELLAMYSGVQQFRHFLEGREF
FT                 TIYTDQKPLMYAFKQKHEKASPRQIRQLTFISQFTTDIQHIKGIENIVADV
FT                 LSRPTICTIEQINYNDIASKQKEDQNLLNIINKTVKSSLQLQLIKLPDSDE
FT                 PLYCDLTDQRIRPYIPQDYTKRIFRKFHDISHPGQRASQKLISSRFVWTNM
FT                 RKDINIWVKECIKCQRSKVNKHTHSPLLKIEVPKQRFSHIHMDIVGPLPPS
FT                 NDYKYLLTIIDRFTRWPEAIPIKEITSENVAKELIEKWIARFGIPQKITTD
FT                 RGRQFESYLFKHLTNLLGITHIKTTAYHPQGNGMIERFHKTLKNALIATNN
FT                 TKWTESLPLILLSIRNTLKEDIHSTAAEMVYGTTLMLPGEIFSSSQQQIDE
FT                 VDFIKKLRTTMRDLKPVNASNHANHRPFVHSDLLQTPCVFVRQDQVRPPLS
FT                 PPYAGPFKVLFRNEKFFKIDVNGRTESISVDRLKPAYVSNSREIQGEHSYA
FT                 LPYLEEISSIETSRKDATRHCQEKDALHHIKKITLKTATSRCIVNSPLANS
FT                 LRGG"
XX
SQ   Sequence 3991 BP; 1506 A; 816 C; 647 G; 1022 T; 0 other;
     ttggtgaccc cgacgtgatc caagaagctt gaaattacaa tcaataccaa ccaaccaaac        60
     atgcaaacaa acaatccaga agctagcact actcaaacaa acaattccaa tcaatcaaca       120
     aacaaccaac caataaatga actgtgcaga gtcagtttca aaccccccga attctggaaa       180
     gctgagccag aactatggtt ttacagaatt gaatgtcagt tccgaactgc tgggatttca       240
     actgacgatt gcaagttcga ctatacagtt gccagcctaa actgcgaaac acttacggaa       300
     gtagccgacc ttatacgcag tccaccggca acagacaagt attcagcact caaaaatcgt       360
     ttaattagca gatttgcaga taacgataca gtcagaatcc aaaaactgct tgcaggagtt       420
     gcattgggag atcagaaacc ttcacaactc ctacacaaaa tgcagagcct aaataacaat       480
     aaattacaag actctgtcat taaaactctt tggttagagc agttaccatc tacaatgaag       540
     gccatattaa tggtaagtgg cgaagatcta acaaaattag ctgaaatagc tgacaaaata       600
     aatgaaacat tagacagacc agcaaacctc tatggtatgt ctagtttgga agatcaaatt       660
     aaccaattga agcaacaagt caataaatta acaacagaac tcaagaacaa gccacagaag       720
     caaggatctt cacagtccac taatgaaaat tgttggtacc acgaaaactt tgggaagaaa       780
     gcaaagaagt gtgaaaaacc atgtaaattt atgggaaacg aagcagggag tcgatagatg       840
     cggcaattcg atctcctaca acaccaagcc gcctttttat atcagacaag aaatttagat       900
     tacagtttct aattgatact ggcgcagatg tcagtgtcct tccgttatca aggttcccag       960
     gcaattctga tccaaatttc agtcttttat cagccaatgg atcactaatt aaaacttttg      1020
     gcaagaagga attaactatc gatctcaatt taaacagaaa atttacgtgg acgttcgtta      1080
     tagcacaagt tacccatgct atcattggag ctgatttttt ggcccatttt ggtattcaag      1140
     ttgatctaaa acacagaaaa cttattgatt cttatactac aacaacacaa tactgccaag      1200
     tcagagacac agaagttttg ggtgtaaagg ctatccattt agcagatatc attacagaat      1260
     tgttaacaaa atattcaaat atacttggac ccatttgtca aacacaaact gaaataaata      1320
     cctttcattt tattgaaaca aaaggcccac ctgtctattc aaaacccaga cgtttatcac      1380
     cagataaatt atctattgct aaagaagaat tccaaaagct cattgaacag ggtattttac      1440
     gaccatcgtc atctaactgg gcaagtccat tacatttgac taagaagaaa aatggtactt      1500
     ggagagtttg tggcgattat cgtcgactca acgcagtcac gaaacctgat cgctacccta      1560
     ttccacacat acaagacata acatatgatt tacacaacaa aagcatattc tcaaccattg      1620
     atttaactca agcatttcac caaattccag ttaacacgga tgatattccc aagacagcaa      1680
     ttatcactcc ttttggtcta tttgagtatg taaaaatgcc atttggttta cggaatgcag      1740
     cacaaaccct gcagagattc atggaccaca tttttcgaga cctttcatac gtctatgttt      1800
     acatcgacga tattcttatc gcatccagaa ctcgtgaaga acatcaacaa cacttagaca      1860
     ctgttttcaa cagactttca aaatattgtc tcacaatcaa tttagaaaaa tgtaaatttg      1920
     gcgaaaaaga agtaacattt ctaggaacca taatcacatc taaaggaata agaccattac      1980
     ctgaaaaagt agaagccatt agaaattttc cgaatccaac aacaatccag gaacttcgac      2040
     aatttttggg catgatcaat ttctatagaa gatggttacc taatgctgct caagaaatgt      2100
     tacccctgac taatttgtta caaaatgtaa aatcaaaatc agctaaaata gattggaatc      2160
     aagaactcga agacgctttt aagaaaataa aacaattgtt agcagattca acagaactaa      2220
     tctatcctga cccaaatgac aaattagctc tagcagtaga tgcttccagc aaagctattg      2280
     gaggagttat acatcaagct actcaacatg gaatagtacg acctatttca ttcttttcca      2340
     gaaaactgtc caccactgaa caaaactaca gcacatatga tagagagtta ttggcaatgt      2400
     atagtggtgt gcagcagttt cgtcatttct tggaaggaag ggaatttaca atttacaccg      2460
     accagaaacc cttaatgtat gcctttaaac aaaagcatga aaaagcttct ccacgccaaa      2520
     tcagacaatt aacatttatt agtcaattta ccactgacat ccaacatata aaaggaatag      2580
     aaaacatagt agcagatgtt ttatccagac caaccatttg taccatagag cagatcaatt      2640
     acaatgacat tgcaagcaaa caaaaagaag accagaattt actaaatatt ataaacaaaa      2700
     cagtcaaatc cagtttgcaa cttcaactta tcaaacttcc agacagcgat gaaccattat      2760
     actgtgattt aactgaccaa agaatcagac cttatattcc acaggactac acaaaaagaa      2820
     ttttcagaaa gtttcacgat atttcacatc cagggcaacg tgcaagtcaa aaattaatat      2880
     caagcagatt tgtttggaca aatatgagaa aggatattaa tatctgggta aaagaatgta      2940
     ttaagtgcca aagatccaaa gtaaacaaac atacccattc accattactt aaaattgagg      3000
     tacctaagca aagattttct catatacaca tggacattgt aggaccatta ccaccttcca      3060
     atgattataa atacttatta acaataattg atagatttac tagatggcca gaagcgatac      3120
     ctatcaaaga aataacaagt gaaaatgttg caaaagaatt gatagaaaag tggattgcaa      3180
     gatttggaat acctcagaaa ataactacag atagaggtag gcaattcgaa tcgtacttat      3240
     tcaaacatct cactaattta ctgggcatta ctcatatcaa aaccactgct tatcaccctc      3300
     aaggcaatgg aatgattgaa cgttttcata agacacttaa aaatgcctta atagcaacaa      3360
     ataacactaa atggactgag agtttaccac taatcctact tagtatacga aacactttaa      3420
     aagaagacat acatagtaca gcagccgaaa tggtttatgg cacaacacta atgctaccag      3480
     gtgaaatttt cagcagttcc caacaacaaa tcgatgaagt ggatttcatt aagaaactaa      3540
     gaacaacaat gagggacttg aaaccagtca acgcaagcaa ccatgccaat cacagaccat      3600
     tcgtgcattc ggatcttttg caaacgcctt gcgtttttgt aagacaggac caagtaagac      3660
     cacctttatc tccaccatat gctggtccat tcaaggtatt gttcaggaac gaaaaatttt      3720
     tcaagataga tgtcaatggg cgtacagaaa gtatatcagt agatagattg aagccagcat      3780
     atgtttccaa tagcagagaa atacagggag aacattctta tgcattacca tacctagaag      3840
     aaatatcaag catagaaaca tcaagaaaag atgccacccg ccattgtcaa gaaaaagacg      3900
     cccttcacca tatcaagaaa attactctca agaccgccac ttccagatgt atcgtaaatt      3960
     caccgttggc gaactcacta cgggggggct a                                     3991
//
ID   Gypsy-14_SiOr-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-288
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 383-383 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 288 BP; 100 A; 51 C; 56 G; 81 T; 0 other;
     tgtggcggat cgatatcgac aatcccatcc atactagggc tgtgcataga atcccgagcg        60
     aagtctatcg gtgccaagaa gaaaagaaga agaagagcgg catcggctga caaataagac       120
     ataacgtgtt tttcaataat tattttattg tagaataatt atttagttgt gtaattaaag       180
     agcagattga acacgtccct ttattttatg gacttttgag ttgtgaaaaa tctaaacagt       240
     aaacccagct gatttcagat tatcatattc acacccagaa caaccata                    288
//
ID   Gypsy-14_SpEx-I repbase;    DNA;    INV; 4008 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4008
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4083-4083 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4008 BP; 980 A; 1117 C; 963 G; 948 T; 0 other;
     gtggtgaccc cgaaagaaca cgggaatgac gagcacctac aagccggagg tcgacgacgt        60
     ggcggaatca tgccgggtag gcgtgagagt accgccgttc taccccgaca agccagcgct       120
     gtggttttcg cagttggact cccaattcgc gctgtccaaa ataacaaccg acgagacgaa       180
     atattattac gtcaccggtt acctcgaccc taagtacgcc gacgtagtag aagatatcat       240
     aaccaaccct cctgataccg gcaagtatga gaagctgaag tgcgagctcg tcagaaggct       300
     gtccgtgacg cgtgaggaga aggtgaaaca actcctcatg cacgaagaac ttggcgacag       360
     gaagccgtca ctattttatc ggcacctcct caacctcgct ggtccagacg taccagagga       420
     gttcctacga gcgatttgga caagccgact accgccatac acgcagacca tagtggcgtc       480
     acagtcaaag atgcccatgg tcgacgtggc cgacctagcg gaccgcataa ctgccatcac       540
     cggcaccccg gcgcaggtgg catcaacatc ggcggcagca ccagcatcat cgagtgccct       600
     cggcggtcta cacgccgaga tcgccgcgct ccataggcag atggagtcga tggcgctcaa       660
     gatcgagcga ttatcccgtg accgaggacg gtctcgcagt cgttcccgtc gccgatccag       720
     ctccaggtcg cactccaact acaggagatc cccacactgc tggtaccacc agaagttcgg       780
     agacagggcc aacaagtgta tcaagccgtg cgactacccg atatcgggaa atgtgcaggg       840
     caatcagtga tggcggccga tgattgtccg agcgcgggtc gcctattcgt gaccgaccaa       900
     aggtcgaaga tgcagttttt ggtcgacacc ggcagtgacc tctgtgtcta cccccgatcg       960
     gcagtggcgc gacgcctcgt taaaaccaat tatgaactca gtgcggcaaa tggttccata      1020
     ataaacacat atgggtatat taaattaaat ttaaacttag gattgcgccg cgacttcgct      1080
     tggcgattta ttattgcaga cgtgacaagg gcgataatag gtgtggattt tttatctttt      1140
     tataacttgg ttgttgattg caggaaccag cgtctactcg acaacaatac aacgctctcc      1200
     accccggctt tgcctgtccg tcgttctgat gatgtgtctt cggtgagggt gagtctcggt      1260
     gattccgcat acacacatat actacgggaa tatcccgaca tcactcgacc tcacggtata      1320
     caccgcacat ccaaacacaa tacagtacat catattcgta ctacaccagg gccaccagta      1380
     tcgtgttctc cgcgtagact ggccccggat aaattaaaaa tcgcgaaagc tgagtttgac      1440
     gatatgttgc agtccggtat ctgccgttta tccgagtcac cgtggtcgtc gcctcttcac      1500
     ctcgttccta aaaaaggtga tggatggcgc ccctgtggcg attacaggat gctgaatgct      1560
     cgtactgtgc cagatcagta ccctatccgg cacatccagg acttcgcaca cagcctgtct      1620
     ggctgtacca tcttctcgca aattgactta gtcaaagcgt acaatcaaga ttcctgtgaa      1680
     tccagaagac atcccgaaga ctgctatcac gacgccgttt ggtctgttcg aattcccgta      1740
     catgacgttc ggtcttcgaa acgcagcgca gtcgttccag cgcttcgtgg atgaaatgct      1800
     caggggtttg gacttcacat acgcttatct tgacgacttt ctggttttct ctaaagacaa      1860
     ggctacgcat gagcttcacc tgcgtcagct tttcaccaga ttgcgagagt atggtatggt      1920
     tatcaacagc tccaagtgtg tttttggtgt gtccgaagta aattttttgg gataccacat      1980
     ctcttcaaaa gggactaggc cgttgccttc caaagtggag gccgtccaga acttcccaga      2040
     acctaaaacg gtcagggagc tgcgcagatt cctagggatg ctgaactttt accgcaggtt      2100
     tatccccaat gcagctacct accaaacacc cctcaactcc ctcctttccg actctgtaaa      2160
     aggctcacat cctgtaaatt ttacagcagc ccaacgacag gcgttccaga gctgcaaaga      2220
     cagcctttgt caggcagcac tactggctca tcctgattgc agcgctaagt tggcgttggt      2280
     cacggatgcg tcagacgttg ccatcggttc tgtcttgcag caactcaacg ctggagcttg      2340
     ggagcctctt gctttctttt ctaggaagct gagcgacacg caggttaagt actctcctta      2400
     cgatcgcgaa ctgctcgcta tttacgagag tgtaaaatac ttcaggcaca tgctggaggc      2460
     tcgcgacttt gtgatttaca cagatcacaa gcccctcaca ttcgcctttc attctcgtaa      2520
     agagaattgc tccccacgac agttccgaca cctcgatttc attgcccaat tcacaactga      2580
     catcaggcac atctcgggca aggacaatgt cgtggcggat acgctatcac gcattgagga      2640
     gattactcaa cctgtgccca tcgaaaggat tgctgcagct caaaaggaag atcaggagct      2700
     caaggaatta ctagcaggtg agaactcact tcgcttgcag ttggtaagtg tgccaggttc      2760
     acagcagcag ttgtattgcg acgtcagcac taccacgcct cgaccttttg tacccaagga      2820
     gctgcgcagg tcaattttcc tcagcctgca ctccttgagt cacccaggta ctaaggcatc      2880
     tgctcgactg gttgctgatc gctacgtgtg gcctggtatc aggaaagatt gtcgtgactg      2940
     ggctcagagt tgcttggctt gccagcgctc taaagtcaca cgacacgtct ccgcgccttt      3000
     gcaatctttc aaattgcctc aggcgaggtt tgcatttatc catatagacc tcataggtcc      3060
     tttgccatta tgccaaggtt ttcggtactg ccttactgcc gtcgatcgct ttacgcgatg      3120
     gcccgaggct atacccctcg cagatataac cgcagaaacc gtggcaaagg ccctactatg      3180
     tggatggata tctcgcttcg gctgcccttc cgatatcgta actgatagag gtaggcagtt      3240
     cgaatccgca ctcttcaagt gcctgtctag catagctggt ttccaacatc gcagaactac      3300
     cgcataccat ccagcctgca acggactggt ggaaagattc caccgtcaac ttaaggctgc      3360
     aatcacctgc cacgctgaca gcagttgggt ggaatctctt ccactcgtcc tgttaggtgt      3420
     ccgcagcgcc tttaaggagg acgttcaggc ttcagctgcc gagttagttt ttggccagcc      3480
     actgcgtctc ccaggcgaat ttttcgaccc acaggccaac gagactgtcg acacgaatga      3540
     ttatctttcc aggcttcgca gtattgtccg tagtcttcaa ccagcaccag cagccagaca      3600
     caacagccgc ttcaagactt tcatttttaa agaactagcc actgcatcgc atgtgttcct      3660
     tagggactgc gctgctggtg gtggtctgaa gccggcatac tctggccctc acaaggtcat      3720
     tgaacgaagt gacaaggtgt tcaaactact ggtgaacggt aaacaggcaa cagtatcgat      3780
     agaccgcatc aagccggcct tcatactgcg tgatcctgac accacatcac attcaccaca      3840
     taacacacca cattcaatac ttaacaacaa cactcttcac tacacaccca acgcggataa      3900
     ccgagaatca tcttctccta aggatgacgt catcaaaacg tcacggtcag gacgtcgcgt      3960
     taaattccca gattattatc gcccttgacg gtctctggag gggggtga                   4008
//
ID   Gypsy-14_SpEx-LTR repbase;    DNA;    INV; 683 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-683
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4143-4143 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4 or 5-bp TSDs.
XX
SQ   Sequence 683 BP; 173 A; 160 C; 99 G; 251 T; 0 other;
     tgtagtgacc taccctatct atgtaaccta atctattttc tcaattatgt tcttcatcta        60
     tctacctatg ttaaattctt aaattctaaa ctatttctat tgttattaca tacatattat       120
     ttactattaa aaatacttaa aactaaatac ttattcttat ataaaaacca taaattaatt       180
     ctatcaatat ttacaatttg tattatataa gttaaatatt attttctgta caaaactact       240
     tttcttatta gtagatagtt tatcaatgta tgacgcgctc aggtactcgt gcgccgactc       300
     ggcgaccggt ccgcccggta cgtcacagcc gcgcgagcga gaccgcgcta tattgatctt       360
     gcgctcacgc actgcactac tgcactgtgc tgcgtcacgc aatgaccaca cagttcgagt       420
     tagcttttcg ttcgagctat cgcgctaacc accgtgcttt ctaagtctag ctttcttagt       480
     gccgctagtg ctagtattaa cagtagactg tctgtaaatg tgcttgtgct atttttcact       540
     ccttctttct gctttcttct tatgtgtatc tgaactgtac gtgtattctg tgtgcaataa       600
     actttcatac tttctgttgt gcaccctgga cgctttattt cttcgcctcc ttaactatcg       660
     ccgtacccta cacataccct aca                                               683
//
ID   Gypsy-14_SpFr-I repbase;    DNA;    INV; 4326 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4326
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1851-1851 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..877
FT                 /product="Gypsy-14_SpFr-I_1p"
FT                 /translation="MAKSTVESSVDLAAITLTSKIPEFWVDSPRVWFYRIE
FT                 AMLAPQKLSDDSRFDIVVSKLTKEAIQQVTDLLMDPPEGKKFESLKTRLLS
FT                 IYEESKNRQLQKLISEMDLGDQKPSQLLRRMRELAKEKIPDDTLRMLWQGH
FT                 LPSPLRAVLAATELKDLDSLAVLADNVFETTRATHVSEVSQQQPSTSKETD
FT                 LIMAEIAKLTMKVEQLERSNARSRPQQRNWNRSRSASRTGSRARSASRRTP
FT                 ESPDWLCYYHYRFRTKAKKCNEPCSWKSSPEN"
FT   CDS           847..4062
FT                 /product="Gypsy-14_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ALFLEIVPGKLAQVPTAAEVCTNVPSHRLRVTDRNSG
FT                 LCFLVDTGADISVLPSKLVLKNNKNSECQDYYLFAANGTKIKTYGVKSLVL
FT                 DLGLRRALRWTFVIAEVNAPILGADFLANFKLLVDISARRLIDEVTNLKVL
FT                 ASVVSSNESSIKTVDVSHPYHDLLAEFPDITKPVSFKEPPKHSVLHYIETS
FT                 GPPVYARCRPLPPHRYAKVREEFRLMQELGICRPSKSAWASPLHIVSKKNG
FT                 QLRPCGDYRALNAITKADRYPIPRIHDFTYLLANAKIFSRVDICRAYHFIS
FT                 VNPADVEKTAIITPFGLFEFPRMTFGLKNAAQTFQRFMNHTVLSGLDYVYC
FT                 YIDDVAIFSKNKIEHEQHLREVFSRLSKFGLTINLEKCEFGKSKIEFLGYE
FT                 VSTEGIRPLQEKMDAINNFPKPTTVEQLRRFLGMVNFYRLHLPHAVEYQSH
FT                 LNQYLVKSKKKDKTKIEWTESANEAFLRCKAALQSAVTLSYPQPDTPLALM
FT                 TDASNTYVGAVLQQFINNKWIPLGYFSKKMSTPQTKYSTFDRELLAIYLAI
FT                 KYFQNMVEGRHLIIYTDHKPLTFMFKKSNSDNELPRRVRQILYISEFSTDI
FT                 RHIDGDKNVVADTLSRVETITCATVLDYAAIAQAQVDDTNLKLLRNQCNDN
FT                 KCNLIFKDIAIPTSHLPVTCETSTNKIRPYIPLNFRKQAFESVHNLSHPGI
FT                 RTSRKLVKERFFWEGMNSDIGKWTKSCIKCQRAKVSRHVKTELGHFSLAER
FT                 FSHIHVDIVGPLPTSIQDYRYLVTIIDRQTGWPEAYPTKDITAETVAKVIF
FT                 EGWIARFGCPVKLTSDQGRQFESSVFKELMRYLGIDKKRTTPYHPQSNGMI
FT                 ERWHRSLKAALMARLNSTTWVDELPIVLLGLRAANRDDTGVSAAELTYATP
FT                 LRLPGDFYNDTDTKILDNCQYVQKLQNIIKNLKPKPMRHKDARTLFVYPDL
FT                 DKCTHVFVRSDRVRRPLEPPYDGPFRVIGRKDKTYLIDFSGRTAYISIDRL
FT                 KPAYMCKESTSNIVSNKNKLDNKNIDISTGPATAISDNRSALANESAPLLT
FT                 TRSGRVSKKPVRFNF"
XX
SQ   Sequence 4326 BP; 1401 A; 854 C; 882 G; 1189 T; 0 other;
     ttggtgtacc cgacgtgatt atttttctgt agttgtgata gtgtaaacag tgcgcaaaat        60
     ggctaaaagt acagtagagt catcagtgga tctcgcagca attacactta catcgaagat       120
     ccccgaattt tgggtcgact cgccccgcgt ttggttttac cgaatagagg ccatgctggc       180
     accgcaaaag ttatcggacg actcgcgttt cgacattgtc gtgtcgaaat taaccaagga       240
     ggccatccag caagtcacag accttctaat ggatccaccc gaaggtaaaa agtttgaatc       300
     gctaaagaca cgacttctct ctatttacga ggaatctaaa aacagacaac tacaaaagtt       360
     gataagcgag atggacctgg gagaccaaaa accttcgcaa cttttgcgtc gcatgcgaga       420
     gttggcgaaa gaaaagattc ccgacgacac cttaagaatg ctgtggcaag gtcatctacc       480
     ttctccgtta cgtgcagtct tagcggccac ggaattaaaa gatctagata gcttggccgt       540
     ccttgcagac aatgtatttg agaccacgcg cgcaacacac gtaagcgaag tgagccaaca       600
     gcagccaagc acgtccaagg aaacagacct catcatggct gaaatagcca aacttacgat       660
     gaaggtggag caactagaaa gatcaaacgc tagatcgaga ccgcagcaac ggaattggaa       720
     tcgttcgaga tcagcatcca gaaccggtag ccgagcacga tctgcgtcac gaagaactcc       780
     tgagagccct gactggttgt gttattatca ttatcgattc agaacaaagg caaagaaatg       840
     caatgagcct tgttcctgga aatcgtcccc ggaaaactag ctcaggtacc aactgcggcg       900
     gaggtttgta ccaacgtacc tagtcaccgc ctccgagtca ctgatcgcaa cagtggctta       960
     tgttttttag tggacaccgg tgctgacatt tcagtgctac ctagtaagtt agtgttaaaa      1020
     aacaataaaa atagtgagtg tcaagactat tacctatttg ccgccaacgg aactaaaata      1080
     aagacttatg gtgtcaaaag tttagtgtta gatttaggtt tacgtcgcgc attacggtgg      1140
     acatttgtga tagccgaagt gaatgcgcct atattaggtg ccgatttttt agcgaacttt      1200
     aagcttttag tggatataag tgcccgtaga ttaattgacg aagtcacaaa cttaaaagtt      1260
     ttagcttccg ttgtaagcag taatgagtcg tcgatcaaaa ccgttgatgt aagtcacccg      1320
     tatcatgatc tgctcgctga atttcccgat ataactaaac ctgtttcgtt taaagagcca      1380
     ccgaaacatt ctgtattaca ttacatcgaa accagcggcc cgccggtata cgcacgatgc      1440
     agaccgctgc cgcctcatcg ctacgctaag gtaagagaag aatttagatt aatgcaggaa      1500
     ttaggaattt gcagaccgtc gaaaagtgcg tgggctagtc ctttacatat tgttagtaag      1560
     aaaaatggtc agttacgtcc ttgtggtgac tatagagcgc ttaacgcaat tacaaaggcc      1620
     gatcgctatc ctatcccgcg aatacatgat tttacatact tgctagctaa cgcaaaaata      1680
     ttttcacgtg ttgatatttg tcgtgcatat cattttatat cggttaatcc tgccgatgtg      1740
     gaaaagacgg caattatcac acctttcggt ttatttgagt ttccccgcat gacatttgga      1800
     cttaagaacg cagcgcaaac tttccagcgg tttatgaacc acacagtcct atctggttta      1860
     gattacgttt actgctacat cgatgacgtc gcaatattta gtaaaaataa aattgaacat      1920
     gaacagcatt tacgagaagt ttttagtcgt ttaagtaaat ttggcttaac aattaatctc      1980
     gaaaaatgtg aatttggtaa atcaaaaatc gagtttttag gttacgaagt ttccacggaa      2040
     ggcattcgac ctctacaaga gaaaatggac gctataaata attttcctaa accaacaact      2100
     gtcgaacagc tcagacgatt tttaggaatg gttaatttct atcgtttaca tttacctcat      2160
     gcggtagaat atcaaagtca tttaaaccaa tatctagtaa aatcaaagaa aaaagataaa      2220
     acaaaaatag aatggacgga aagtgcaaac gaggcattct tacggtgtaa agctgcgcta      2280
     caaagcgcgg tgacgttatc gtatccacaa cctgatactc ctttagcact catgactgac      2340
     gcgtcgaaca cttacgtagg agccgttctt caacaattta taaacaataa atggatacct      2400
     ttaggctatt tttcaaagaa aatgtcaact ccgcaaacta aatatagtac tttcgataga      2460
     gaacttctag caatttattt agccataaaa tattttcaga acatggtaga aggacgacat      2520
     ttgattattt atacggacca taaaccatta acgtttatgt tcaaaaaatc caattctgat      2580
     aatgaattac cgcgtcgcgt tagacaaatt ctctatataa gcgaattctc taccgacata      2640
     aggcatatag atggcgacaa gaacgtcgta gccgacacat tatcacgggt tgaaacaata      2700
     acatgcgcta cagtattaga ttacgccgcg attgcccaag ctcaagtgga cgatacgaac      2760
     ttaaagttat tgcgtaatca atgtaacgat aacaaatgta atttaatttt caaagacata      2820
     gcgataccga caagccacct tccggtaacg tgtgaaacgt caacaaataa gattcgcccg      2880
     tatataccgc taaactttag gaaacaagcg ttcgaatcag tacataactt gagtcaccca      2940
     ggaatccgta cttcgcgaaa attagtcaag gaaagatttt tctgggaagg aatgaatagt      3000
     gacataggca aatggacaaa aagttgcatt aaatgtcagc gtgcaaaagt atccagacat      3060
     gtaaaaactg aattaggaca tttttcacta gcagagcgat tttctcatat ccatgtcgat      3120
     atagtaggcc ctttacctac ctccatacag gattatagat atttagtcac aataatagat      3180
     cgccaaacgg gttggcccga agcttatcct acaaaggata tcacagcaga gactgtagcc      3240
     aaagtaatat tcgaaggatg gattgcacgt tttggatgcc ctgttaagct gacaagcgac      3300
     cagggtagac aattcgaaag cagtgttttt aaagaactta tgcgatattt aggcatcgat      3360
     aagaaaagaa caacgcctta ccatcctcag tcgaacggga tgatcgagcg ttggcaccgt      3420
     tctttaaaag cagctctaat ggcgaggcta aattcaacga cttgggtaga cgagctacca      3480
     atagttttgt taggtttacg tgccgccaat cgcgatgata caggtgttag tgctgcagag      3540
     ttaacttacg caacaccttt acgtttacct ggcgatttct ataacgatac agacactaaa      3600
     attttagata attgccaata tgtacagaaa ttacaaaata tcattaaaaa cttaaaaccg      3660
     aagccgatgc gacataagga cgcccgcaca ttatttgtat acccggattt agacaagtgc      3720
     acgcatgtgt ttgtacgatc tgacagagta aggagacctc tagaacctcc ttacgatggt      3780
     ccctttagag tgataggtag aaaagataag acttatttaa tagatttctc tggccgtacg      3840
     gcatacatat ccattgatcg actcaaacct gcttacatgt gtaaagaatc gacaagtaac      3900
     atagttagta ataaaaataa gttagataat aagaatatag atataagtac aggtccggca      3960
     acagcgatta gcgataatcg ttccgcgctc gctaatgaat ctgcgccttt gcttacaacg      4020
     cgcagcggcc gagtcagtaa aaaacctgta cgttttaatt tttaagtaaa catattatag      4080
     taataagtta atgttatttg tatttcctgt ctaatttaga gttaagattt attagtgatt      4140
     taagtgtatt tgtataaacc tattaaattt cgaaccattg ttaattgtta aactagagtg      4200
     tacttgataa taaatatact tattgttagt ttgttagttt tagctataat attgttttaa      4260
     gtgattgtta aatcaatacc ccgctttgtt ttgttaaagt gtttctttta aaaagggggg      4320
     gagtag                                                                 4326
//
ID   Gypsy-14_SpFr-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-231
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1868-1868 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 231 BP; 67 A; 46 C; 39 G; 79 T; 0 other;
     tgtagcggca tagcgtataa gtactactta aggcgtgtca agttgcaacg taaacaaagt        60
     tacagtttat atttcggatg taataaatta taggtattgt ttattcattt cattgttcat       120
     tatgtgaaca cgcgcactgt gtatccgtct tattaaggaa caatatactt tcagtcgtca       180
     tcggtctttc atttggtcta cacctcagat cacacactac caccctctaa a                231
//
ID   Gypsy-14_TrNi-I repbase;    DNA;    INV; 5647 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5647
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 218-218 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           670..2070
FT                 /product="Gypsy-14_TrNi-I_1p"
FT                 /note="gag."
FT                 /translation="METYPIKFFLLNKNELVYEVLIRGEEPASTVLELRKQ
FT                 INKLTPIIPTSDICESGIEPDVDISGASISLSELLSRVKNLEDKFDNNLFE
FT                 RTRALCNHLYHRIKRLDVSDTKYADKIKSLIKHITTLSSKLDTINKSANPT
FT                 SCEPVVDVVHQIPPSDNPPHVSIHCDRSHISDLQKLKYNGKSCVHAFIQRV
FT                 KEYSTARNIPSSKLLAYATEIFTGDALHWYRSIRTSVSTWDELVAVLVEDF
FT                 SQFDYDYRLLSEIRQRTQGDSETITIYFAKMIELFSRLSKGISEQEKLEIL
FT                 LHNIRPCYASVLASNSSSINSIDSLKTICKNFEKIQSITSQFKEPPRVTGE
FT                 TLAPDLAFSKFNESNSNKPKFYNQHRYNKYNNPDNNSPYTKTNFKNQHGNN
FT                 NFYHFNKKPNTSISAISQPSTNTKTVFCPRCRNSDHPLSQCNANRYPICFK
FT                 CGTKNVKYPDCPKCHTKSNSKN"
FT   CDS           2061..5294
FT                 /product="Gypsy-14_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FKKLTTEDCRNIKDETKNSKNFDVNDWQNWLSTIKTF
FT                 FSSYFVTTIFDKKPIDDIRPYATVQVGNITLCGLLDSGSAATILGNNCLEY
FT                 LKPIGLAIHKDLKTFTAAGGENLPTIGYVNLPVTFENQFHILKAYVIPTIK
FT                 TNLILGVDFWTKFNLFPKFYNSISLHSLSNCPTNVNTVSEANVVLHSYHEL
FT                 TDNQRVTADNVIDQFKDISTEKCGLGRTNLVMHQIDTGDSIPIRQRYYRVS
FT                 PEKQRILSEELDEMLALGVVEECESPWSSPVLLIPKKDGRLRFCLDSRKLN
FT                 SVTKKDAYKLPYISEILDNLKNAKYLSSIDLSKAFWQIPISEADRNKTAFY
FT                 IPHRGTFRFVTMPFGLTNSPATQQRLVDTLFYGPEFENSVFVYIDDIVVAS
FT                 PDFESHISLLLKVHKKLKMANLTINFEKSVFFRNELKYLGYVINSKGLHVD
FT                 PSKIETIVNYPTPTNKKEVKRFLGIASWYRKFVPNFSSIAGPLNKLTSTNK
FT                 KNNPFSWTTQAEESFNKLRELLISAPILSCPNFNLPFQVHTDASDYGVGGM
FT                 LTQITEGVEHPIAYYSRTLTGPEKNYSITEREALAVLTALEHWRCYLDNGM
FT                 KFIVYTDHSALKWFLNLSNPTGRLARWGVRLSAFNFEIKHRRGVDNVIPDA
FT                 LSRSCKISAINSNNILLNTNDQWYLNIFNGCQNSPTSFPNYLVKNNRLFRY
FT                 SKSNNPLHKEFEWKEVIPAESRQAIVLENHSNPTAGHFGIFKTFKRLSLSY
FT                 FWPGMHADVVKAVTSCDTCVAHKHQNHAILGEMGRPKPCTRPFQVISVDLV
FT                 GPLPPTRKLNTFILVVTCCFSKYCLLFPIKRATAEIITKILEEHVFLIHGI
FT                 PSTVILDNGKQFVSTTLKHMLEKYKVPKLHFTPKYSPQVNTVERYNKTIMT
FT                 AISTFISNDHRIWDLLVPKIQFAVNCSVNEVTGYTPSFLVYGRELVTCGTH
FT                 YIDTDTEDDLIFQPRDSYAENIGILSSIFNKVQSLLLQAHSRNSLHYNLRR
FT                 KPAEFNIGDIVWRKTFYLSDKDKYFNKKLAPKFIKCKIIGKKSPLVYELAD
FT                 MSGKPLGSWHIKDIKITNYKT"
XX
SQ   Sequence 5647 BP; 1813 A; 1105 C; 892 G; 1837 T; 0 other;
     gtggcgccca aaacgtggtt tctgttgcct aatcacatct aggttctaga cctttgtcag        60
     ctgctagata ttcttctacc tacaacgtta ttgtgaacga gacggtgact cagcgaactg       120
     gtacgtactt tcacattatc atactgtact ctttttcttt tctaatttat ttctgtgtct       180
     gtgttttctt ctgtctttct gttttatgtt cattgttaac tgttgcgtat tgtatacgtt       240
     acttttgaag cacataacgg ttattatttt aaagaagaaa tctacctaca ttttttcata       300
     ttattttgag tacaactgaa ttgaactaaa tttaatatta actgcaaatt ggaaactatt       360
     attgtaaatt attgtaaagc tactttatta actatttcta aatagttaat tactattaat       420
     tgtggttata cgtaacagtt cgcactatta tttctttcct tcctctgttt tttttttctg       480
     ttctataatt ttaattttca gtcacccact gattttcatt tctcatctca tttcatttat       540
     tttgggttat tcatttttca tcaccacatc gtagttaatt ttacttgtaa agaacaccat       600
     ttcattgcca tctagtagtt tgtattctat ctctgttttc attttcttaa tttccgcact       660
     ttaagcgtca tggaaaccta ccctattaaa ttctttttgc tgaacaaaaa cgaattagtg       720
     tacgaggtgc ttattagagg cgaggaacct gcgtcaacgg tacttgaact acgtaaacaa       780
     attaataaac ttacgcctat tattcctact tctgacattt gtgaatcggg catagaaccg       840
     gacgttgata tttcgggtgc tagcatatct ttaagcgagc tattatcacg cgttaagaac       900
     cttgaagata agttcgataa taatctcttt gaacgtacta gagctttatg caatcaccta       960
     tatcaccgta taaaacgttt agatgtttcg gatactaaat atgcagacaa aataaaatca      1020
     ctaataaaac atataactac actttcgtca aaattagaca caattaataa atctgctaat      1080
     cctactagct gtgagcctgt agtagatgtt gttcatcaaa ttccacctag tgataatcca      1140
     ccacacgtgt cgatacattg tgaccgctcg catattagtg atctacaaaa acttaaatat      1200
     aatggcaaat cttgcgttca cgcctttata caaagggtga aggagtacag cacggctagg      1260
     aacatacctt cttcgaaact gttagcttac gccacggaaa tatttacggg tgacgcgtta      1320
     cattggtacc gtagtatcag aacctctgtg tctacgtggg atgaactagt ggcagtactg      1380
     gttgaagatt tcagtcagtt cgactatgac taccgacttc tgtctgagat tcggcagcgt      1440
     actcaaggtg attctgagac catcacaatt tattttgcta aaatgataga attattctcc      1500
     aggcttagta aaggaatatc ggaacaagaa aaactagaga tccttctaca taacattcga      1560
     ccttgttatg ctagtgtgct ggcgtctaac tcatcatcaa taaattctat tgacagctta      1620
     aaaacaatct gcaagaactt cgaaaaaata cagtctataa cttcgcaatt taaagaacct      1680
     cctagagtta caggtgaaac cttggctcca gatcttgcct tctcaaaatt taatgaatct      1740
     aattcaaaca aacctaaatt ctacaatcaa catagataca ataaatacaa caatcctgat      1800
     aataattcac cttacactaa aactaatttt aaaaatcaac atggtaataa taatttctat      1860
     cattttaata aaaaaccaaa cactagtata tctgctatat cacagcctag cacaaacaca      1920
     aaaactgttt tctgtccacg ttgtcgtaac tctgatcatc ccctgagtca atgtaatgct      1980
     aacaggtacc ctatttgttt taaatgtgga actaaaaacg taaaataccc tgattgccct      2040
     aagtgtcata caaaatctaa ttcaaaaaac taactactga agattgtcgt aatataaaag      2100
     atgaaactaa aaattctaaa aactttgatg ttaacgattg gcaaaattgg ctatcaacta      2160
     ttaaaacttt cttttcaagc tattttgtta caacaatctt cgataaaaaa cctatagatg      2220
     atattcgacc ctacgcaact gtccaggttg gtaatattac tttgtgtgga ttactagact      2280
     ctggctcagc tgcaactatt ctaggtaaca attgccttga atatctaaaa cctatcggcc      2340
     tagctattca taaagaccta aaaaccttca ctgctgcagg aggcgaaaat ttacctacta      2400
     ttggttatgt taatttaccc gtaacattcg aaaatcaatt tcatatttta aaagcctatg      2460
     ttatacctac tataaaaacc aatctcatac tcggtgttga tttttggaca aaatttaatc      2520
     tctttccaaa attttacaat tctatttcat tacatagttt gtctaattgc cctactaacg      2580
     taaacacggt ctctgaagca aatgttgtgt tacattccta ccatgaacta acagataatc      2640
     aacgtgttac cgctgataat gtaatcgatc agtttaagga tatttctact gaaaagtgtg      2700
     gtttaggtag aactaatcta gtcatgcatc agattgatac tggagattct atacctatta      2760
     gacaaagata ctaccgcgtt tctccagaga agcaacgtat tttatctgag gaactggatg      2820
     aaatgctagc tctaggtgtg gttgaagaat gtgagagccc ttggtcttcc cctgtcttac      2880
     ttatacctaa aaaagatggc aggcttaggt tctgtctaga tagcaggaaa ctaaactcgg      2940
     taactaaaaa ggatgcctac aaattaccct acatatctga gattctagac aacctgaaaa      3000
     atgctaaata cctaagtagt atagacctat ctaaagcttt ttggcagatt ccaatttctg      3060
     aagctgaccg taacaaaact gcgttctaca ttccgcatcg tggtaccttc agatttgtca      3120
     ctatgccttt cgggttgaca aattcaccgg ctacacaaca aagactagtt gataccttat      3180
     tctatggacc tgaatttgaa aactccgtat ttgtttacat agacgatatt gtggtggcta      3240
     gtcctgattt cgaatcccat atttctctac ttctaaaagt tcataaaaaa ctaaaaatgg      3300
     ctaatttaac tattaacttt gagaaatctg ttttttttcg taatgaactt aaataccttg      3360
     gctatgtaat caactctaaa ggtcttcatg ttgatccttc aaaaattgag actattgtca      3420
     actaccctac acctacaaat aaaaaagaag ttaagcgatt tctcggtata gcttcgtggt      3480
     accggaagtt cgtccctaac tttagttcaa ttgctggtcc tttaaataaa ttaacttcta      3540
     caaataaaaa aaataatcct ttttcttgga ctacccaagc cgaggagtcc tttaataaat      3600
     taagagaact attaatttct gcccctattc tatcttgccc caattttaat cttccctttc      3660
     aagtgcatac agacgctagc gattatggtg ttggaggcat gctaacccaa atcacagaag      3720
     gagttgagca ccctattgcc tactacagta gaaccttgac tggacctgaa aagaactata      3780
     gcattacgga gcgtgaagct ttggctgttt taacagcttt ggaacactgg agatgctatc      3840
     tcgataatgg catgaagttt atcgtctaca ctgaccattc agccctcaag tggttcctaa      3900
     atctaagtaa cccaacggga cggttagctc gctggggtgt ccgtctatca gcctttaatt      3960
     ttgaaattaa acacaggcgt ggcgttgata atgttatccc tgatgcattg tcacgttcat      4020
     gtaaaatttc ggctataaat tctaataaca ttctacttaa tactaatgat cagtggtact      4080
     taaatatatt taatggttgt caaaattccc ctacatcttt tcctaattac ctagttaaaa      4140
     acaatcgttt attccgttat tcaaaaagta ataacccttt acataaagag ttcgagtgga      4200
     aagaagtgat tcctgctgag tcgagacaag ctatcgtgct cgaaaaccac tcgaacccaa      4260
     cagcgggtca tttcggaatt tttaaaactt ttaaacggtt aagtctcagt tatttctggc      4320
     caggcatgca tgcagacgtt gtaaaagcgg tcacttcttg cgatacttgc gtcgcgcata      4380
     aacaccaaaa tcacgcgatc ctaggtgaaa tgggtagacc taaaccttgc actagacctt      4440
     tccaagttat tagcgtcgac ctagtaggac ccctaccccc taccaggaaa ctaaacacct      4500
     ttattctagt tgtcacttgt tgttttagta agtattgctt actatttcca atcaagcgcg      4560
     ctaccgctga aattattacc aaaatactgg aggagcatgt attcctaata catggcatcc      4620
     cttccactgt gattttggat aatggtaaac aattcgtaag taccacgctt aaacatatgc      4680
     ttgagaaata taaagtccct aagttgcatt ttacacctaa atattcacct caagtaaaca      4740
     cagttgaacg ttataacaaa acgataatga ctgccatttc cacgttcatc tctaacgatc      4800
     atcgcatctg ggatctacta gtacctaaaa tacaattcgc tgtgaattgt tccgtaaatg      4860
     aagtaactgg ctacactcct tcatttctgg tatacggacg tgaattagta acttgtggta      4920
     cacattatat cgacactgat actgaagatg atttaatttt ccaacctcgc gattcctacg      4980
     cggagaacat aggtatccta tcttctatct ttaataaagt tcagtcacta cttctacaag      5040
     ctcacagtcg taatagtcta cattataatt tacgccggaa accggctgaa tttaacattg      5100
     gtgatatagt gtggagaaag acgttttacc ttagtgacaa ggacaaatat ttcaataaaa      5160
     agttagcacc gaaatttata aaatgtaaaa taattggtaa aaaatctcct cttgtctacg      5220
     agttagctga tatgtctgga aaaccactag gctcctggca tatcaaagat attaaaatta      5280
     caaattataa aacatagtat ctataaataa ataaatctaa aataactaaa ttacaaatta      5340
     taaaataaac taatatatct aacctagtct taatagtaac atcttatcta cttaacttat      5400
     gtattaaata ttatatccgt ttttttacat acaaacttac taacgagaac aattgatact      5460
     atataattgt tactctgttt gttagagtct caagtcataa actaaaaggc taaagacggt      5520
     gtgatacctt gtatgtaagc gtgaagtatg aatgttagcc tgaacgtatt agtaagtttg      5580
     cagttggtag tgatagcgga tttttctatt ctaagtacga aaaatccttc acttcgcggc      5640
     ggggtac                                                                5647
//
ID   Gypsy-14_TrNi-LTR repbase;    DNA;    INV; 929 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-929
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 172-172 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 929 BP; 257 A; 227 C; 183 G; 262 T; 0 other;
     tgtaacgttg taccttgcta gctctaagaa taggttagaa attataaaac tacaaataat        60
     tacaataaaa tcattataaa acttaactct aaaattatta aaacgcctta attaaactaa       120
     aagaaacaca attctatcac ttataaattt aaactacata ttaatataat taacttgtca       180
     taaatatact acggaaccca atattaattg tttacgcaaa ggtccgcgca tctattgcgc       240
     ctgcgcatcg ctaaacaagt taaaaaccgg tcgcgccgct cgccactctt cggctccgct       300
     cgggcacatt cgttaaatgc aaacggcaga cgacttaagt gcatcagacg tgacggctgt       360
     gtcacacgct ctcagatacc gtaacatcgt gcctaattaa tacgtggttg ttctaaaaaa       420
     caaatccgaa tcggaaatcc cgctggggta agtttccatg cattgcttga tagtgtttct       480
     attgtaaggt gttctccttt gcttaacatt ctagctagaa tcagctgttc cttttttttc       540
     ttttgttgct gggacactgt gacctttgga cccggctacg tggtccgagc tctgttaacg       600
     cttgccttgt gtctgcgctt ccaggatttt atgttccacc ttggaccctc gcttcgcaac       660
     ctattctacc ttgcggcgag tggaagaccg accggatcct gtctggacta ccggaagcgt       720
     acctgggaag gagcaaggcc gccgccagag ctacccacgg ttcaggccag tgttcccagt       780
     ttacttctac gacctcctga tctgggtgtg attggggcaa cggaagttgg ccgaaataaa       840
     gacaaatttc ctcaaaaaaa agatttgctt tatttggacc tacctaccta cctacctgcc       900
     ggcaagccta ctaccaggca agtgccgca                                         929
//
ID   Gypsy-14_TrVa-I repbase;    DNA;    INV; 5505 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5505
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 259-259 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..4873
FT                 /product="Gypsy-14_TrVa-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTSTTDGSTLEAKLAILTELVSKLAESQTHSHNPSRF
FT                 TFEPFSPSSSETIEEYFSRLELQLGLCNIPAPKWSSHARVHMGGELNSTLT
FT                 NLAYPSPVESLTFDEIKTHLLNHFRKSRNKYTEAINFRKIIQNPNESVQNY
FT                 VSRLKSGSRFCEFGDFLDYSLIIQFLHGLQRNDIRDEIVGKKPATFLEAVG
FT                 IATEMEATREASTLLRPECTAKTSEQVHQFAHESRPKFKKSNSHSQRSFSH
FT                 RNSFRRRSSSHNHSHNHNRNRSSSRQSCKSSSSHNQGNSAHNSTNNHFIQN
FT                 PCDSCGGAHRRSSCKFRNSKCHLCNYSGHISSVCRKKSSSRKNNSSNNSNV
FT                 NEISHLESNSSQGESDVTEYLQFNSVTGRTPPVFLDVLLNNVSVAMELDTG
FT                 GACSIMSLKNFNNYLPDAKFNPVSGVFFTSYTKNKFECLGYATVDVMFAKR
FT                 TKQLKLYIVDSPGDNIFGRDWILHFSDLLSFDDLFNKKALSCGNSSNFASI
FT                 NQVRQPLENLLNKYENLFSDTAGTLTGPPVQLHLKEGATPVFARARPIPLA
FT                 LRDHYANEIEKKLKSSHFIKVSHSEWASPTHVVIKGNKLRITGDYKATLNP
FT                 KLIVDEYPIPRVEDLFSKLRGANFFCKLDVTDAFMNLLCSDSTCEVMTLNT
FT                 PTHGLVRPTRAQYGIASIPAIWQRRLEEILRPVKNAFNFFDDILVFAETIE
FT                 ELFVVLETLFEKLLASGIKLNRSKCKFLLNSVEFLGYLIDSSGLHKLPDHV
FT                 NAIVNAPKPENADELRTFLGKVTYYHSFIKDLSTLTYPLREMLKSSNFKWT
FT                 PEASNAFQILKSELVSDNVLTPYDPTLPVVLACDASPVALGAVLSHIMRDG
FT                 QERPIAYASKSLNTTEKAYSQIDKEALAIVWGVKRFFQFVYGRKFTIQTDN
FT                 KPVSHIFAPNAMLPKFTLSRCANYASYLSNFNYDLKFRPSKANANADYLSR
FT                 ILVPERPSDKIPDTFHSFVLGQIELLPITPEAIASETQADPHLARLYKALL
FT                 NGECLKSLGFKGNELEYSTASDCLMLGHRVVIPSKFRQTLLKELHLAHLGI
FT                 TKMKGLARSIIYWPNIDKDIENISKTCEACLQNSRNPPKTTSHHWEYPSEP
FT                 WDRIHVDYAGPIFNQYLLIIVDAYSKWTTVHLTSSITSEKTCKLLHNTFSA
FT                 FGIPDTVVSDNGKQFDSAEFRAFLAEQGVRFHKRTAPYHPSTNGQAERYVQ
FT                 SLKRAISTMGATPNTLRSCINKFLLHYHRAPHQSTGEPPSLLFLGRIVKMK
FT                 IDKMLPPANKKVTNAVPLKNSSADSSERNPSTSNLHLHDTPADHKIHRSFS
FT                 TGQSVLFRVYNSKIKWRRGIIVEKLGNLHYLVEFQGIQHKRHIDQLLSCSN
FT                 NPSIFKNTLDNSTDDETIVSSQRRRVRFHVPVTAPNSASVPSTIAPASVPS
FT                 TIVPASVPSASAPVSVPSTIVPASSAIITPTTCKAASSNSVPSSLKIASST
FT                 TCKSRSSIAPYSSCTTSCTSAATTSSVPSLTSLSPSIVSSASSCSSTSRNM
FT                 STSKPTASILKQRSSWDSSSSSKASAYLPTSANVPLHPLTSAVAMTPLMTP
FT                 LRRSIRERKEKQRYSPS"
XX
SQ   Sequence 5505 BP; 1560 A; 1255 C; 882 G; 1807 T; 1 other;
     aatggcgacg aggataaaag tttttaaata tttgtactaa tcgcgtgtcc agaaatgtct        60
     cgtatcagtc gtttaattcg ttcgtcgtaa agtctccacg tgtttcgtgt tcgcgactac       120
     catgacttca actacagatg gatctactct tgaagcaaaa ttggcaattc ttacggagct       180
     ggtttccaaa cttgccgaat ctcaaactca ttctcacaat ccttcacgct tcacgtttga       240
     accattctca ccttcatctt cggaaaccat cgaagaatac ttctcgagat tggaacttca       300
     actaggctta tgtaacattc ctgctccaaa atggtcttcg catgccagag ttcacatggg       360
     tggtgagtta aatagcacct taacaaacct cgcctaccct tctccagtcg aatccttaac       420
     ttttgatgaa attaaaactc accttctwaa tcactttcgc aagtctcgca ataagtatac       480
     ggaagcaatt aattttcgaa aaattattca aaaccctaac gaatctgtcc aaaattatgt       540
     ctcaagattg aagtctggtt ctcgattctg cgaatttggg gactttctcg attactcctt       600
     aatcattcaa tttcttcatg gccttcaaag aaatgacatc cgagatgaaa ttgttggaaa       660
     aaagcctgcc acattcctgg aagctgttgg aattgctacg gagatggaag ctacaaggga       720
     agcctccaca cttctcagac ctgaatgtac tgccaaaact tctgaacagg ttcatcaatt       780
     tgcacatgaa agccgtccta agtttaaaaa atctaattct cattcgcaac gttctttcag       840
     tcatcgaaac tctttccgca gaagaagctc ttcgcataat cattcgcata atcataatcg       900
     caacagaagt tctagtcgac aaagttgtaa gtcttcatct agtcataatc aaggtaacag       960
     tgctcataat tctactaata atcatttcat tcaaaaccct tgtgattcct gtggtggcgc      1020
     tcatcgacgt tctagttgca aattccgcaa ctctaaatgt catttgtgta attattctgg      1080
     tcacatttca agtgtttgca gaaaaaaaag ttcttctagg aaaaacaact cctccaataa      1140
     ttctaatgtg aatgaaatta gtcatttaga gtccaattct agtcaaggag agtccgatgt      1200
     cactgaatat cttcaattta actctgttac tggtcgcact cctccggtct ttcttgatgt      1260
     tcttctgaat aatgtatctg tagcgatgga acttgatacg ggtggtgctt gctctatcat      1320
     gagtctcaaa aattttaata attatcttcc tgatgctaaa tttaaccctg tttctggagt      1380
     cttctttact agctatacaa agaataaatt tgagtgtctc ggttatgcta ctgttgatgt      1440
     catgtttgct aagcgtacaa agcaattgaa actgtacatt gtagattctc ccggagacaa      1500
     tatttttgga agagattgga tcctacattt cagtgatctt ctttcctttg atgatctctt      1560
     caataaaaaa gccttgagtt gtggtaattc ttcaaacttt gctagtatca atcaagtccg      1620
     ccaacctctt gaaaacctac tcaacaaata tgagaatttg ttcagcgata cagctggcac      1680
     cctcacggga cctccagttc aacttcatct caaagaggga gccacaccag tttttgctcg      1740
     agcccgtccc attcctttag ctcttcgtga tcattacgct aatgaaatag aaaaaaagct      1800
     caagtctagt cattttatta aagtgagtca ctccgagtgg gcctctccaa ctcatgtcgt      1860
     catcaaagga aacaaacttc gtatcactgg tgattataaa gctacattaa atccaaaatt      1920
     gattgtagat gaatacccga ttcccagagt ggaagatctc ttctctaaac ttagaggcgc      1980
     taattttttt tgtaagttag atgttacaga cgccttcatg aatttgctat gttccgattc      2040
     aacctgtgaa gtcatgactt taaacactcc aacacatgga ctcgttcgac ctaccagagc      2100
     tcaatatggt atcgccagta ttccagcgat ttggcaacgt cgtctggaag agatccttcg      2160
     tccagttaag aacgctttca atttttttga cgatatctta gtttttgctg aaaccattga      2220
     agaattgttt gtagttctag aaactctttt tgaaaagtta cttgcttctg gaatcaaact      2280
     gaacaggtct aaatgtaaat ttcttcttaa tagtgttgaa ttcctcggtt atcttataga      2340
     tagctcaggc ctccataaac ttcctgatca tgtaaatgcc attgttaatg ctccaaaacc      2400
     tgaaaacgct gatgaacttc gtacttttct tggtaaagtt acttactacc actccttcat      2460
     caaagatctc tctaccctca cttacccgtt aagagaaatg ttgaaatctt caaacttcaa      2520
     atggactcct gaagcttcaa acgcctttca aatccttaaa tctgaacttg tgtctgataa      2580
     tgttcttacg ccttatgatc ctaccttacc tgttgttctc gcatgtgatg ccagtccagt      2640
     agcgttggga gctgttctct cgcacattat gcgtgatggt caggagcgtc ctatagccta      2700
     cgccagtaaa agcttaaaca ctactgagaa agcgtactct caaatcgaca aagaagcctt      2760
     agcaatcgtt tggggcgtaa aaagattctt tcaatttgtg tatggtagga agtttactat      2820
     tcagaccgac aataaacctg tctctcatat atttgctcca aatgccatgt taccaaaatt      2880
     taccctgtca cgttgtgcca actatgctag ttatctgtcg aatttcaact atgatcttaa      2940
     atttcgccct tctaaagcca acgcaaacgc agattacctt tccagaattc ttgtccctga      3000
     acggccttcc gacaaaattc ctgacacctt ccactccttt gttctcggac aaattgagtt      3060
     gttacctatt actcctgaag cgattgcgtc tgaaactcaa gcagatccac atcttgcacg      3120
     tctctacaag gctcttctta atggtgaatg tttaaaatcc ttaggcttca aaggaaacga      3180
     attggaatat tctactgctt ctgattgtct catgttggga catcgtgtcg tgattccttc      3240
     aaaatttcgt caaaccttgt taaaggaact gcacttggct cacttgggta ttacaaaaat      3300
     gaaaggttta gctcgatcga tcatttattg gccgaatatc gataaagaca ttgaaaatat      3360
     ctccaaaacc tgtgaagcct gtctccaaaa ctccaggaat cctccgaaaa ctacctccca      3420
     tcattgggaa tacccaagtg aaccatggga cagaatccat gttgactatg caggacctat      3480
     attcaaccaa tatctcctaa taattgttga tgcgtactcc aaatggacaa ccgttcattt      3540
     aaccagttca ataaccagtg aaaaaacctg caagttactt cacaatacct tctccgcctt      3600
     cggaatacca gacacagtgg tatcagacaa cggaaaacag ttcgactctg cggaattcag      3660
     agctttccta gcagagcaag gtgttcgttt tcacaaacgc acggctccat atcacccctc      3720
     gaccaacggc caagccgaac gttatgttca atctttaaaa agggccattt ctactatggg      3780
     agcaactcca aacactcttc gctcttgtat caacaagttt cttcttcact accatcgcgc      3840
     tccacatcaa tcgaccggtg aaccgccatc cttacttttc ctgggaagaa tcgtgaaaat      3900
     gaaaattgac aaaatgctac cacctgcaaa taagaaagtt accaatgctg ttccactgaa      3960
     aaattcttca gccgattcca gtgaacgcaa tccttctacc tccaatcttc atcttcacga      4020
     cacccctgct gatcacaaga tccaccgttc cttctcaact ggtcagtctg ttttatttcg      4080
     tgtgtataat tccaaaataa agtggcgaag aggaatcatt gttgaaaagc tcggaaatct      4140
     tcattattta gttgaatttc aaggtatcca acacaagaga catattgatc aactgctatc      4200
     ctgctcgaat aatccgtcta tcttcaagaa cactctcgac aattcaacag atgatgaaac      4260
     tatcgtttca agtcaacgtc gacgtgttag atttcatgta cctgtaactg ctccaaattc      4320
     tgcttctgta ccttctacca ttgcacctgc ttctgtaccc tctaccatcg tacctgcttc      4380
     tgtaccttct gctagtgcac ctgtttctgt gccttctacc atcgtacctg cttcatctgc      4440
     aattattact cctactactt gtaaagctgc atcttcaaat tccgtgcctt catccttaaa      4500
     aattgcctct tctactactt gtaagtctag atcttcaatt gctccttatt cttcgtgtac      4560
     tacttcttgt acttcagctg caactacatc gtcggttcct tcgctaactt cactttctcc      4620
     atcaattgtt tcatctgcgt cttcctgttc ttcgacatct cgtaatatgt ctacatcgaa      4680
     gccgactgca tccattctga agcaacgctc tagttgggac tcaagttctt cttctaaagc      4740
     tagtgcttat ctacctactt ctgctaatgt acctctacat ccattaacat ccgcagttgc      4800
     aatgactcct ctcatgactc ctctcagaag atctatcaga gaaaggaagg aaaagcagcg      4860
     atactctccg tcttaatttg gtctgaaatt ttagtattat ttcaaatgat tttatctgtt      4920
     tagttttaag taattttagt ataaattcaa atgatttcat tcttttaatt ttaattcatt      4980
     tgatcattcc tacttaaatg catctgcttg aaatcaatta gaattttaaa ctgcgcttta      5040
     actcaattgt tgggtaaacc ataaatgcga taaatctccc ctcttcaatt atgcgataat      5100
     ctcccctctt caattagctg cattcttact tcttcatttt attaaagtct atttttctaa      5160
     ttgtaattaa gtgtaacttc aatcaataat cgattgtctc ttcaatcata ttgtgtttct      5220
     ttaatgaata ttaacaatgt tcttgatcga tttaattcga tgaaaacttg ttatttttaa      5280
     ttctgctaac tttcattgtt attttgaaat agcgattctc tttttgtctt tgtattaata      5340
     agggcaattc tctccaccgt aaatctcatt tattgatctc gctaatcaaa actgctcttt      5400
     gagctgaatt gttaattgtt tttaattttt taatatttta ctagtcattg attgttttaa      5460
     ttttcccgat atttgtttaa atgtttctta atgcgtcggg agagt                      5505
//
ID   Gypsy-14_TrVa-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-14_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-204
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 318-318 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 204 BP; 49 A; 48 C; 27 G; 80 T; 0 other;
     tgttatatcc tagtttatta gttaagttgg tactgtaccg cttgggacta tagccctcgc        60
     taggcgaaca acctggttct tcattcaatg taaccctact ttaatacaga tcgtcttttc       120
     ctcaattcca acagttttct ctttccagct tctattttaa tcaaagttcc ttattttatt       180
     aattgatcca cctcgatcat gtca                                              204
//
ID   Gypsy-150_AA-I repbase;    DNA;    INV; 5473 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-150_AA_;
KW   Gypsy-150_AA-LTR; Gypsy-150_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5473
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1025-1025 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4044-4550] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           949..2661
FT                 /product="Gypsy-150_AA-I_1p"
FT                 /translation="MPLVNHIEPYVPGTIPFSQYLEQMEWVFIDNKMADAN
FT                 EQKASFLAACGKEVYSELKLLFPGKDLKTVSFKEITDSLKKRYDKTESDMI
FT                 QRFKFYQRVQGPTESAEDFVLAVKLQAELCEFGEFKDIAIRDKLVCGIRDP
FT                 DVQQRLFDEEALTLAKAEKIIINRELAGANRKLVSRESGRVSVLNRLGKRQ
FT                 EPTVSRARSRGRSRGPSNRYRSRSRSVSFDRRNRSSSRSRKFRCNFCGRDG
FT                 HTRRFCYDLKSKEKKSVKFVDSPAAKPKMTEYQKSLRRRLNRSVSDDEDME
FT                 CLLISSIGKINEPCFRSVLIEGIRVEMEIDCGAAVSVVSKETYEGEFGDIP
FT                 LQKCTRKLAVINGSRLVVEGQIPVQVELNGRRKSVKLVVLRCGSSFTPLLG
FT                 RDWLDIFFPEWRNAFGSGTNLNQLSLPTSEERVVNDIQSKFANVFDKSLFT
FT                 PIKGFEADLVLKKGAAPVFKRAYDVPLRLRDKVVEHLESLEKDGVITPIDA
FT                 SEWASPVIVVVKKDGGIRMVIDCKVSINKVIIPNTYPLPLAQDMFASLAGA
FT                 KVFCSLDLTGAYTQLLLSKSQEKS"
FT   CDS           3270..4676
FT                 /product="Gypsy-150_AA-I_2p"
FT                 /translation="MKSVEKRGPLVLPRFSLTKAQKSYPILHLEALAVVST
FT                 IKKFHKFLFGQKFTVYTDHKPLIGIFGKEGKNSLFVTRLQRYVMELNIYDF
FT                 DIVYRPSSKMGNADFCSRFPLPVEVPVSLQREFIKSLNVYDEFPLDHVSIA
FT                 KESEQDEFIQRVVSYMRHGWPKKLERCLLDVYAQHQDLELVDGCLLYQDRV
FT                 FIPASLQKQLMKLLHRNHSGITKIKQMARRTVYWYGMNSDIESFVKSCSVC
FT                 CQMNAVAKPVSTHTSWIPTTKPFTRIHADFFYFDKKVFLVVVDSLSKWIEV
FT                 EYMKFGTDARKVISKFMSVFARFGLPDVVVTDGGPPFSSKEFIVFFEKHGV
FT                 KVMKSPPYNPSSNGQAERMVRVVKEGLKKFLLDPDMIGLSTEDMVSYFLFG
FT                 YRNTCSEDGHSFPSERLFSFKPKTPLDLIHPKNSFKHHSTKPKEVDKRVVY
FT                 SPSRKKHDWIRQVFSAASWRYCLL"
XX
SQ   Sequence 5473 BP; 1427 A; 963 C; 1456 G; 1625 T; 2 other;
     cgagatatta cagtggcgac gaggtggaga tttgtttttc gcgtcccggg aagtgcaaat        60
     cagtgcgagt tttccggttt cccagtgatc ttttggcgaw tttcaccggg ggaaacagtt       120
     tgtttgcgag cgagccattc atcccgttgg gctgtgtttt tgccgacgga gggaaagcaa       180
     cagtttgcgc tgccatactg gcagtaccta cactgcagga gttggtttgg tttcactttg       240
     cacaggtttg ctgcaaaaac cgtaagtttt tctcgaaaag tggaaataaa cagagaaaaa       300
     gtgttttaat ttgcatgccg tttgtgtgtt aaaagtgagt tttatgagcc attttcttct       360
     gcctagcaag caaagaattt gtgtttcatt ttgttttccc gtactgtgac ccggctttgt       420
     gtgtgcataa taaaaattaa atcaatcaca gccgaagtgt ttgtcacgta cgaggagttt       480
     gtttcgccaa cattgtagtg tgttgcgcca aagtttgttt gcaacaaagt ttgtatcgcg       540
     agaaattggt ttgtagcgag agattgttgc acttgtttat gctcatgttt gatagcaacc       600
     gaagtttatg ctagtgttga gcaacaaaat tgtttggttt gtttgtgtgt ttcacgtttc       660
     gttgataaag tttgtcgttg catgttgcat acgatcgttt cgaaacagtt gaaaagtgtt       720
     tagtttgaca cagtagcagt ttatgttttg cactgtggga caaattgttt caaaattgga       780
     caaaaaaagt tttgcaaaaa agtttttaaa tttttgcgtt tgtttagtca actgtttgtt       840
     ttgatcaagt ttattcgatt gttacactga aagaaatttg tagttgaatt tcgtgtaata       900
     gtttgtcgaa tcgttttcag tttttcgtcg tttttcatcg ctgtcagtat gccgttggtg       960
     aatcatatcg agccgtatgt acccggcacg attccgttta gccagtactt ggagcagatg      1020
     gaatgggtgt tcatcgacaa caagatggcg gatgcgaatg aacagaaagc atcgtttctg      1080
     gcggcatgcg gaaaggaggt gtacagcgag ttgaagcttc tgtttcctgg aaaggatttg      1140
     aagacggtgt cgttcaagga aatcaccgat tcgttgaaga agcgatacga caagactgaa      1200
     agcgacatga tccaacgttt caagttttat caacgagttc aaggccctac tgaaagtgcg      1260
     gaggatttcg tcctagctgt gaagctgcaa gcggagttgt gtgagtttgg cgagtttaag      1320
     gacatcgcaa tccgcgacaa gcttgtgtgt ggcattcgcg atccggatgt gcaacagcgt      1380
     ttgtttgatg aggaagcttt gacacttgcg aaagcggaga agatcatcat caacagggag      1440
     ctagctggag cgaaccgaaa gctagtttct cgtgaatccg gtcgagtgag tgtgttgaac      1500
     aggcttggta agaggcaaga gccaacagtt tcacgcgcga gatcccgtgg taggagtcgt      1560
     ggaccaagta atcggtacag gagccgtagc cgatcagttt cgtttgaccg tagaaatcgt      1620
     tcttcatcac gatcacggaa gtttcgctgc aatttctgtg gcagagatgg tcacacgcgt      1680
     cgtttctgct acgacttgaa gagcaaagag aagaaatccg tgaagtttgt cgattctccg      1740
     gcagcaaagc cgaagatgac ggagtatcag aaaagtttgc gtcgtcggtt gaacagatct      1800
     gtctcggatg acgaggatat ggagtgtttg ttgatctctt ccatcggaaa aatcaacgaa      1860
     ccgtgttttc gatccgtttt gatcgagggt atccgtgtcg aaatggagat agactgtgga      1920
     gctgcagttt ctgtcgtcag caaggagacg tacgagggag aattcggcga tataccgttg      1980
     cagaagtgta cgaggaagtt agcggtgatc aacggaagtc gtttggtggt tgaaggacag      2040
     attccagtgc aggtggagtt gaacggaaga cggaaatccg ttaaactggt tgttttgcgc      2100
     tgcggaagtt cgtttacacc gttgcttgga cgtgattggc tggatatctt tttccctgaa      2160
     tggaggaatg cgtttggcag tggtacaaac ctgaaccagc tgtcgttgcc gacttcagag      2220
     gagcgtgtcg tgaatgatat tcaaagtaag tttgccaatg tttttgataa gtctttgttt      2280
     actccgataa aaggttttga ggcagatcta gtgttgaaga aaggtgcagc accggttttt      2340
     aagcgtgcgt atgacgttcc attgcgttta agggacaaag ttgttgaaca tttggaaagt      2400
     ttggaaaaag atggcgtcat aacaccgata gatgcgagtg agtgggcatc gccggtgatc      2460
     gttgtagtga agaaagacgg cggaatcagg atggtgatcg actgcaaggt ttcgatcaac      2520
     aaggtgatca tcccgaatac ctatccgttg ccgttagcac aagacatgtt tgcttcacta      2580
     gctggtgcta aagtgttttg ttccctagat ctgaccggag cgtatacaca gttgttgttg      2640
     tcaaaaagtc aagaaaaatc atgacgatta atacgatcaa aggtttgttt tcgtataatc      2700
     gtttgccaca aggtgcttct tcaagtgctg ctatttttca acgtgtaatg gatcaagttt      2760
     tgaaaggcat tgatggtgtt tattgctact tagacgatgt tttaatagcg ggtgaggatt      2820
     atgaggactg tttgagaaag ctttatttgg ttttggagcg actttccaag gccaatatta      2880
     aagttagttt gcaaaaatgc aagtggtttg tgacaagttt gccatttctg ggtcatgtgt      2940
     tgacgataaa ggtttgttgc cgtgtccaga gaaggtcgag acgattcgta gagccaaggt      3000
     tccgaacaac gtcaccgagc ttaaggcatt tttgggtttg ataaattact acggtaagtt      3060
     tatccccaat ttatcctcac gtttaagctg tttgtatcgt ttactcaaaa aagacgttaa      3120
     gtttgtctgg accgatgagt gtcgtcgtgt gtttgatcaa agtaagcaat cgttgttgtc      3180
     ttcaaaactt ttagtgtttt tcgatccaga aaagcctgtc gttgttgtga cagatgctag      3240
     cggttatggg ttaggtggcg tgatwgctca tgaaatcggt ggagaagaga ggcccattag      3300
     ttttacctcg cttcagttta acgaaagcac aaaaatccta cccaatttta cacttggaag      3360
     cgctggccgt tgtaagcact atcaaaaagt ttcataagtt tttgtttgga cagaagttta      3420
     ctgtgtatac cgaccacaag ccgttgatag gcatatttgg caaagaaggc aaaaattcgt      3480
     tgtttgtgac gcgtctgcag agatacgtaa tggaactaaa catctacgat ttcgacatcg      3540
     tttacagacc gtcatcaaaa atgggcaatg cagatttttg ctcaaggttt cctttaccag      3600
     ttgaagtgcc agtttcgttg caacgggagt ttatcaaaag tttgaatgtt tacgatgagt      3660
     ttcctttgga ccacgtttca attgcaaaag agtcagaaca agacgagttt atccaaagag      3720
     ttgtttcata catgaggcat ggttggccga aaaagttgga acgttgtttg ttggacgttt      3780
     atgcacaaca tcaagatctc gaactggtcg atggttgttt attgtaccag gatcgtgtgt      3840
     ttattcctgc tagtttgcaa aagcagttga tgaagttgct gcatcggaat cactcaggaa      3900
     tcaccaaaat caagcagatg gcaagaagga cagtttactg gtatggcatg aatagtgaca      3960
     ttgaaagttt cgtcaaatca tgtagtgtgt gttgccagat gaatgcggtt gcaaagccag      4020
     tctcaacaca taccagttgg attcctacaa caaaaccgtt tacccgtatt catgcagact      4080
     ttttctactt cgacaagaag gttttcctgg tcgttgtgga cagcctttca aaatggattg      4140
     aagttgagta tatgaagttt ggaacagatg ccaggaaagt catatcaaag tttatgagcg      4200
     ttttcgctag gtttgggtta cctgacgtag ttgttactga tggcggacca ccgtttagct      4260
     cgaaagagtt catcgttttc ttcgagaaac atggagtgaa ggtgatgaag agtccaccgt      4320
     acaacccatc gagcaacggt caagcggagc gcatggtcag agtagtgaag gaaggtttga      4380
     agaagtttct gttggatccg gatatgattg gtttgagtac tgaagacatg gtttcgtact      4440
     tcttgtttgg ttaccggaat acttgttcgg aagacggaca ctcgtttccg tccgagagat      4500
     tgtttagttt taagcctaag acgccgttgg atttaatcca tccaaagaat agttttaaac      4560
     atcattcgac gaagcccaag gaagtggata agcgtgttgt atatagtcct agtcgtaaga      4620
     aacatgactg gatcagacaa gttttctcag ctgcgtcctg gagatactgt ttattataaa      4680
     aatttcagac ctacggatat tagacgatgg ttagaagcca aatttctcag acgtatctca      4740
     tcaaatgttt ttcaggtttc cgttggaggg agagtctact ccgctcaccg aaaccagctg      4800
     aagctaaggt cggcaccgcc caaagcgccg aggtttgttc ttggggagga gcgagaggaa      4860
     ccaacgcaga aaacgactag agaggacgat gacgatgacg ataggtttag cgacgattcg      4920
     acgaagagcg acttttacgg ttttccttcg gattccttca tctacagtga cgggggcggt      4980
     cgtaacgggg tcgcaagtcg tggtcctgag gcggaggttg gtgttccgcg ccgtcgaagt      5040
     gcgtcacacg tggaggaaga tctacgaaga tcgtcgagtt tgccggttga ggaggtcgag      5100
     ccgcaggctg gtccgtcgca tcgagctgtg tgccagtcgt caccatcgaa gaatcgacag      5160
     gagagtgtca ggcgttctaa gcgacctaag cgtctgaaga aggatgtcga ttacgagtac      5220
     tattgaactg ttgtgtttgt ttatatgcca tggaggcatt caaaagtgaa ttagtttatc      5280
     ggcagtcatg ttttgccgtg ttctgtagtt ttggtagttt ttaccgatca aattgtttag      5340
     acggcagtga agtttcgccg tagttttgtt tgaagttttc ggcagtcgag ttttgccgac      5400
     agtcagtaga gcggcagtca ggttttgctg cgtattcatt gtaaatatgt ttaaaaacta      5460
     aaagggggag aac                                                         5473
//
ID   Gypsy-150_AA-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-150_AA_;
KW   Gypsy-150_AA-I; Gypsy-150_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-181
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1026-1026 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 181 BP; 50 A; 49 C; 32 G; 50 T; 0 other;
     tgtagcatcc accctagcta caccactggc tgtctggtac agcagtggag atcgtatcaa        60
     taaaagaatc agtttatctt ctgactgcac acccgaacag acgcgcgttt cattactgcg       120
     ttttaccgta tcacagtctc ggtcataagt aattaattac cgtttagaac ccaatctccc       180
     a                                                                       181
//
ID   Gypsy-151_AA-I repbase;    DNA;    INV; 4884 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-151_AA_;
KW   Gypsy-151_AA-LTR; Gypsy-151_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4884
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1027-1027 (2011).
XX
DR   [2] (Consensus)
XX
CC   'KGCTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1958..3730
FT                 /product="Gypsy-151_AA-I_1p"
FT                 /translation="MVEQGVICPVDYPTDWVNNMQIVEKPNGSLRICLDPK
FT                 PLNACIKREHFLIPKTEDILCRLNGKQVFTVLDLRNGFWQMELDRQSSDLT
FT                 TFMTPFGRFRWKRVPFGISSAPEMFQKRMVQLFGDIPGVEVYFDDMSIAGE
FT                 DYEEHDEILAKVLQRARDNNVRFNPAKIQYRTDKVKFMGHIASEDAIAPDS
FT                 SYVQAIIDMPKPSNKSDVLRVLGLLKYLGKFIPNFSQRTAHLRNLTKNDVE
FT                 WNWTDDHDRELKDVLASITEAPVLAIFDGDKQVVLQTDSSKDGLGSVIMQD
FT                 GKPVAYASRTLSKSEQKWAQIEKELLAIVFACERFHHYLYGRRFVVQSDHK
FT                 PLETLVKRDIDDVTPRLQRMFLHLLKYPGMDIVYTPGKNLLVADCLSRASL
FT                 PDDVDFSEELSGMIHAVSQQACMSTDNYNYYVEKLGNDDRYRRIAYYVENG
FT                 WPPFHQLDDLGQPFYKYRDLLHYENGLLFKEHRLVIPTAMQRCISNWLHAP
FT                 HLGIEKTLARARSQFFWPGMTNDITELVKNCTVCEKFTRNTQKEPLLQDSP
FT                 PEYPFQRVGIDLYEYGGRDYVVVIDAYSGYVFSERLDEKTMLHM"
XX
SQ   Sequence 4884 BP; 1396 A; 953 C; 1171 G; 1354 T; 10 other;
     tggtgtcaga agtggtgagc tcggaatcgt wwataaatcg tcgcgaaaat cgtcgcgtgt        60
     ttttktttaa ataagtgcaa ttttgtgctg ttcgcaagct ttgcgaaata aaaaaaaaaa       120
     gtttcaagct cacaagaaca cgttcgagaa acttcgagtg aacgtttgtg tattggtgaa       180
     gcaagattga agtgcacgaa aaagctccaa acgtgagaga tcgaatgttg actgcacgaa       240
     agcttttgat ctttacgtca atcgaccaac tgaagtaaac aaacggtgaa gcgaaagagg       300
     aagagtggaa cgagcttttt gttgctgttt tattgatacg gaagcgaaaa tggatcaacg       360
     tttaccgcaa ccattggatt gtacgaactt ggccagagag tggcctaaat ggaagcaaca       420
     gttctatata tatatgatcg caagtaacaa gaatgctgat gtggagcgta ataaaatagc       480
     aacattcttg tggctcattg gtgagcgtgg ggtggaaata tacaacacac tctttccgaa       540
     cgccggtgat gttgacagta tgtttggtgg ggcgaccgtt gctgctggag ctgttgctgc       600
     tgggctgttg ctgctgggga tgctgctgct gctgttggtg ctgctggggt ttcggctggt       660
     aacgtgaacg caactggaac cggaggacaa aatgtacagc gtacattagc agatgttatc       720
     acggcatttg atggctattg tctaccgcgg aagaatgttg ccatggaggc atttaagttt       780
     aatatgattg ttcaaaagga gaagcaatca tttgccgatt ttgaaacggc tctccgaact       840
     caactggcgt actgcgaata tgaatgtgct acgtgtcatt cttcatatgc cgatcgaatg       900
     cttcgtgatc gtattataat tggcgttcag gcgataagaa gcttcagctg aagctactgg       960
     atggaaaaga tgaaccgttg cgaagtgtgg tggaaacatg caagatattt gaagcggcaa      1020
     ctgagaataa acaacttctc gataacaagg cgcaccatga aatgcacgtc gtcgtagaag      1080
     aaccagtcaa ggaagatggg tggcagtcgt caagaaagca tcgtgctaca actgtgggca      1140
     gaccttcaac gagagacatc gcctcttttg tccagcgaga aaggtgaact gcgacgcttg      1200
     tggccgacgt ggccatttca aacggttctg caaggcaaca agatcgggag acaaagggaa      1260
     tcggaacgtt catcagctag aggaaaagca taagcccaac agggaggctg tgcacaatct      1320
     caactggcgt gaatcaggta attgggaaac agataatgtt aatgcaagtc aaccaaaggt      1380
     aacgtcactt ggtacttctg atttacgtta tagaatgaat tcgaacagtg gcaatgatag      1440
     ggtatctcgc gtcaggtgga caaagcgata tctgattgaa gacaatccgg tggatttcaa      1500
     gctggacaca ggagctgatg tgaattgtat tccaatgaaa tgcgtaaaac ggttgaaggt      1560
     cccctacatt cgcaatgcct ccgtgtctaa cgttgtggat tacagttcga ataaattaaa      1620
     attcatggta tatttctctt ccctgtttcg atcctgataa aggggtaccc ataatgcaga      1680
     attcctggtt gttgatgact catatgagcc tatactaggt cttgagtcat gcgtagcttt      1740
     cggtttggtc gaacgtctga atgccgtacg gcctgatcca gaattccctg aaagtaaaac      1800
     tgatttcgtc cagcaaaatc gtgctgtttt tgaaggtcta ggtaagttcc caggcacttg      1860
     ttctattgtt ctgaaagaaa attccgttcc tacgcttcac tacaagaaga gaattccttt      1920
     gagtcttcat gatcgtttga aggctgagct aaagtctatg gttgaacagg gagttatttg      1980
     tccagtagat tatccgactg actgggtaaa taatatgcag attgttgaaa agccaaatgg      2040
     ttctctcagg atctgtcttg accctaagcc tttgaatgcc tgcataaagc gagagcactt      2100
     cctcattccc aaaactgaag atatactatg tcgtttgaat ggtaagcagg tattcacagt      2160
     gctggatcta cgtaatggat tttggcagat ggagctcgat cgtcaaagct cagacttgac      2220
     cactttcatg accccattcg gtcgttttcg ttggaagcgg gttccttttg gtatcagcag      2280
     tgcgcctgag atgtttcaaa agcggatggt tcagttgttt ggtgatattc ccggcgttga      2340
     agtatacttt gatgacatgt caatagccgg agaggattac gaagaacatg acgagattct      2400
     agcaaaagtc ctacagcgag ctcgggataa taatgtcagg ttcaatccgg cgaaaattca      2460
     gtaccgaacc gataaggtta aattcatggg ccacattgca tccgaggatg cgattgcacc      2520
     agattcatcg tacgttcagg caatcatcga tatgcctaag cccagcaata aatcagacgt      2580
     tcttcgtgtt cttgggcttc tgaaatatct cggcaaattt attcctaact tctcccagcg      2640
     gacggcgcat ctccggaatt tgacaaaaaa tgacgttgaa tggaactgga ccgatgatca      2700
     tgatcgagag ctgaaagatg ttctagcatc tatcactgaa gcgcctgttt tggctatatt      2760
     tgatggtgat aaacaagtcg tgttacaaac agatagctca aaagatggtt taggcagcgt      2820
     gattatgcaa gacggaaaac ctgttgcgta tgcctctcga acactttcga aaagcgagca      2880
     gaagtgggct caaatcgaga aagaattgtt agccatcgtc tttgcgtgtg agaggttcca      2940
     ccattacttg tatggtcgtc ggtttgttgt acaatcagac cataaaccat tagaaacctt      3000
     ggttaagagg gatatcgatg atgttactcc tcgtcttcag cgtatgtttt tacatctttt      3060
     gaaatatcca ggcatggaca ttgtgtacac cccgggtaag aacttgcttg ttgctgattg      3120
     tctttctagg gcatcccttc cagatgatgt tgattttagt gaggagttga gtggcatgat      3180
     tcacgcagtc tctcagcaag catgtatgtc cactgataat tataattact acgtcgaaaa      3240
     gcttggaaat gatgatcggt atcgtcgcat tgcttattac gtcgaaaacg ggtggccacc      3300
     ttttcatcag ctagatgact tgggccagcc cttctacaaa tatcgagact tgctacacta      3360
     tgaaaacgga ttactgttta aagaacatcg gttggtcatt ccgactgcaa tgcagaggtg      3420
     tatttctaat tggttacatg caccgcattt gggtattgaa aaaacgctgg ctcgtgcwmg      3480
     atcgcagttt ttctggccag gtatgacaaa cgacatmacc gaactwgtca aaaactgtac      3540
     ggtttgtgaa aagttcacgc gtaatactca aaaggagcca ctacttcagg attctccgcc      3600
     ggagtatcct ttccaacgtg ttggaattga tttgtatgaa tatgggggac gtgattatgt      3660
     agttgtaatc gatgcgtatt ccggatacgt cttctctgaa cggttggatg aaaaaacaat      3720
     gcttcacatg tgattgtaga ctactcgatc gtatgtttcg mttgttatgg ctatccaaca      3780
     caagttcgat gtgacaatgt accttttaac tcctcggcat ttgacgcata tgccaataag      3840
     tgcaacattg agttcgagtt ctcaagtccc cgatatccgc agagcaatgg tttggcagaa      3900
     aaaggtgtgg cgattgctaa aaacattttg aaacgatgtt atgaaacggg tgaagtcgaa      3960
     cagtttcggt atcgattgct cgaatacaat actactcctg tagcgagtat gggtctttct      4020
     cccgcccaac tgttctttgg acgtcaactg aagacccgcc taccgatatc gagcgaatcg      4080
     cttgttcgaa acaaatgttc ttgaagaatg acgatgttaa aagaaagcta attcaaaaga      4140
     agcgcgctga tcagaagtac tactatgatc gatctgcgaa acaattaccg tccttgaatc      4200
     gaggtgataa agtgatcttt aagaagaatg gtaaagagtg gcattacgga gaaatagtac      4260
     ggagtgtgaa cggccggtcg tatgttatta gagataattt tgggaatcat ttccgtcgga      4320
     accgacggtt tatcacacga acgataaacg agaattctaa tccaagtgaa ctgttgtcga      4380
     agaagatcaa caaagtctga tgaaccgttt tgaaaaccac cacaaaccta atttgccatt      4440
     gcaagtaatt cctgattctc ctgtgtccca gccaaatgtt acgagctttc ctccccatgc      4500
     tgtagaacaa gaaccagttt tgtcagatta tgagtcttct ggttcatcgt cctattttga      4560
     tgctgaacaa ggaagttttk aaagtgattt tgaatcggat gtgtacaaca cctcgggcca      4620
     atcaaatcaa tattcaaata ttttcgcctg tccaccgacg caagaaaatc ctcagaatct      4680
     atataaaaca cgaagtggtc gaattgttcg gcctccacga agatatgatg agtagstagc      4740
     aacccgatcc taattatcct ttcctattat tgttgtatcc tactaacccc gagtcgccgc      4800
     gggtgtacgg ctgccctgta acattaggtt taacgaaagg attttttttt gtaacagatg      4860
     tagcttaaaa agaagaagaa agcg                                             4884
//
ID   Gypsy-151_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-151_AA_;
KW   Gypsy-151_AA-I; Gypsy-151_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-172
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1028-1028 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 172 BP; 53 A; 30 C; 34 G; 54 T; 1 other;
     tgtaataaga ttgtaaatat atctagcaac actgtagtat tcggtatgaa cttccttcta        60
     gagcattagt cagtagtcat tgagcagtgg acggatagtc acgtcgcaaa waaagtcgtc       120
     gtattgaacc gtgtaaatcc gtgttttatt accgttaaag acacttctta ca               172
//
ID   Gypsy-152_AA-I repbase;    DNA;    INV; 6675 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-152_AA_;
KW   Gypsy-152_AA-LTR; Gypsy-152_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6675
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1029-1029 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4721-5203] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1062..2306
FT                 /product="Gypsy-152_AA-I_2p"
FT                 /translation="MRQQYPGPTVEDLSRRLKTVELHDRDEREILRSVNQN
FT                 QLRSVIPNNLHMPESVKRNFNPQVTFNSIGNLNAHQTERQTGNLNRFNEDT
FT                 FNQYQQLPRSTDFGFLPNQVPQSHSPYNSPLRNLNRSVNQNNDQHYLRRQP
FT                 YQTCNIVEKWPKFFGDSSSVPLVCFLRNVDILCRSYGIDKNELIKHAHLLF
FT                 SGDASIWYTTYVEKFVDWDSLVYYLTLRYDNPNRDRFIKEEMRNRKQKQNE
FT                 LFSAFLTDIESLAQRLINKMSEAEKFDIIVDNMKMSYKRRLALHQIASIED
FT                 LANMCYKFDALESSLYTPRSKPVDVLNLEEVDDSDSEFEEINVLQKSRIGK
FT                 SQSSTETRPKLEKAETPPENCRNIREDGHIRKSRPKQAAIFCHVCGMTGKT
FT                 TSTCPKKHPPFNPSLQGPKNL"
FT   CDS           2762..5242
FT                 /product="Gypsy-152_AA-I_1p"
FT                 /translation="MFRIGFAEDYFSNSSEIFSISVSPKITLGETKCLDTV
FT                 EDESLNIPTIEIPESKIETPEDIKTEHELLPEERKKLFEAIQELPITEDNS
FT                 LGRTQVLEHKIELLPDARPKKLPIYRQSLQKEEGIQQDIQRMLRLGVIEEC
FT                 EGPVDFLNPILAIKKPNNKWRICLDSRRLNSCTKRDDFPFPDMVGILQRIQ
FT                 KSRYFSIIDLSESYYQVPLDCNSKNKTAFRTSRGLYRFTVMPFGLCNAPAT
FT                 MARLMTKVLGHDLEPFVYVYLDDIVIVSNSLEEHLRLIKIVANRLSNANLT
FT                 INVLKSKFCQKQIQYLGYILSEHGLSVDSSKIKPVLDYPQPQNVKDVRRLL
FT                 GLSGFYRRFIPSYSDKTAKISDLLKKGKKKFIWTKEADDSFKQLKSALVSA
FT                 PILANPNFSLPFEIETDSSDQAIGAVLTQNQEGERKIIAYYSKKLSSTQRK
FT                 YSATERECLGVLLSIEQFRHFVEGTKFIVKTDAMSLTFLKTMSIESKSPRI
FT                 ARWALKLSKYDIDLQYKKGSENVTADALSRIVNIIDPLLPDEYTSALKEQV
FT                 AKFPEKFKDFRIVDDKLFKYITNTTQLEDNVFKWKYVVPLAERLQIVKNIH
FT                 NEAHFGFSKTLAKVRERNYWPKMSTDIRNFCSSCEICKESKVDNSNPLPPC
FT                 GKPKLCSRPWQMISLDFLGPYPRSKQGNVWALVISDFFSKFVLIQCMRSAT
FT                 AGPVCTFLENMVFLLFGAPQICISDNATVFLSREFKKLLDKYNVSHWNLAV
FT                 YHPAPNPTERVNRVIVTAIRCALNESSSHRDWDKEIHVIAKAIRTSVHEST
FT                 GFSPTLMFSRIWKEKGFREHTMVRF"
XX
SQ   Sequence 6675 BP; 2329 A; 1166 C; 1289 G; 1890 T; 1 other;
     ttttggcgcc caacttttgg gtctttaaga taattgaatt tcggattagc ttgaattatt        60
     atagaataag actattcagt ttgcgtaaga tcagtttgca ataattttaa ttgagtgaaa       120
     ttgaatgaat gagagtgagt gagtacggat taagataagt tgagtacgat ttacatttag       180
     tttgagttga attcgattga tttagtattt agttgtaatt tggagtgaaa gattgagagc       240
     ttaattaacc ttattttttt ttgctttctt atatttgaat ttttataata agtgtatata       300
     aataattact gtaaatacga accatggata actatcttag aatcaattta gatgaccttg       360
     aatatgagga gttaacgtat gaactcgttc ttagaggaat tccggttacg ggatccatag       420
     atgcacagaa aagagaattg cgtgctagga tgcgaagcga aattaaaaat aatattaaaa       480
     ttgagagctt tcgtactttg agtgaagaat atgaaattgt accagaaatg ttggagcaga       540
     tggagataaa tctcaatctg aagactgaac cgacatacga atcaagactt tatcactacc       600
     ttgaacgcgt ggctcgtgca aaagagtttg atgatgtgga cagaggcaac aaactaattc       660
     tactcgaaat tatttgtgaa atgcttaggg tttattttag gcgggatata agcttaaacg       720
     aggagtcttt tgaagattca cttgagctag gagcggtagg aggacaaagt tctaatgatt       780
     cggttacaaa tgtggaactt caggctaatg ataagaataa tacaggccat gaaaccggaa       840
     cacgtccaaa agcaaatagg gatttaactg gaaatcctac ttcacgacaa gataaaaacc       900
     cgataacatc aagacttcga aatacggtta cacaacaaca aagtaaaact caaaattcgt       960
     tcgttccaac tcagaatcca aatakgaatc gtgaatatct gcatatttca gaaatcgaca      1020
     gttatgttac agcttgcgta caacaaaagc tcaatgagca aatgaggcaa cagtatccag      1080
     gaccgacagt tgaggattta tccagaagat taaaaaccgt agaacttcat gatagggacg      1140
     agagggaaat tcttcgatct gttaatcaaa atcagcttag atcggttata ccaaacaatt      1200
     tgcacatgcc agagtcagtg aagagaaatt tcaacccaca ggtgacattt aattcgattg      1260
     ggaacttgaa tgcacaccag acagaaagac aaacgggaaa tttgaaccgg ttcaatgaag      1320
     atacattcaa tcaatatcaa cagctaccga gatcgacaga tttcggtttt ctaccaaatc      1380
     aagtcccaca atcacactcg ccatacaata gtcctttgcg taatctgaat agatctgtca      1440
     atcaaaataa cgatcaacat tacttgcgta gacaacccta tcaaacatgc aatattgtag      1500
     aaaaatggcc gaaatttttt ggtgactcca gttccgtacc attagtatgc tttttgagaa      1560
     atgttgacat actatgtagg tcatatggca tagataagaa tgaactaatc aaacatgctc      1620
     acttgctatt ctcaggagat gctagcattt ggtacacaac atacgttgag aagtttgtag      1680
     actgggatag tctcgtatat tacttaactt tgcgttacga taatccaaat cgcgacagat      1740
     tcataaaaga ggaaatgcga aacaggaaac aaaagcaaaa cgaattattt agtgcgtttt      1800
     taacagatat tgaatctctg gcccaacgat taattaataa aatgagtgag gcagaaaagt      1860
     ttgacataat cgtagataat atgaaaatgt cttataagag aaggttagca ctacatcaga      1920
     tagcttcgat cgaagacctt gccaacatgt gttacaaatt tgacgcactt gaaagttcat      1980
     tgtatacgcc tagaagcaaa cctgttgatg ttctcaacct cgaagaagta gacgactctg      2040
     attcagaatt cgaagaaatt aacgtccttc agaagtcaag aataggaaaa agccagagta      2100
     gtactgagac aagacccaaa ctagaaaagg cagaaacacc tccggaaaat tgccggaata      2160
     ttcgtgaaga tggtcacatt cgtaaaagtc gtcctaaaca agctgcaatt ttttgccacg      2220
     tttgtggtat gacgggcaag acaacatcca cgtgtcccaa aaagcaccct ccgttcaacc      2280
     cttctttaca agggccaaaa aacttgtaaa gggagagagg tataggaatc gaactcttga      2340
     atccctccca tcagagattc cagaacatga atcgttctca tacttcaatc aaatttttca      2400
     aattaatatt gtcccatcca ggtgcccaca tttgagtgtc aaaatactcg attcggaagt      2460
     tgaagctctt gtagacacag gtgcgggaat atcggtaatt agttccgttc cattaattga      2520
     aaaactcaac cttaaaattc atgactcaaa tttgaaagtt gcaactgctg acagaacatt      2580
     ttacaaatgt ttaggctatg taaatgtccc gtataccgtg gactcaatca ctcatgtgat      2640
     accgacagta atagtgcctg agttaacaaa agatttaatt ctcggagttg attttcttca      2700
     cgcttttgga tttagtttgt ccagaaatca aaaagatagt actgaaaaac aaaaaatcga      2760
     catgttcaga atagggtttg ccgaggatta tttttcaaac agtagcgaga tcttttcaat      2820
     ttcagtttct ccgaagatca cattgggcga aacgaaatgt ttagatacag tagaagatga      2880
     aagtttgaat attccaacaa ttgaaattcc agagtcaaaa attgagacac ctgaagacat      2940
     taaaacagaa catgaattgc tacctgaaga acgtaaaaaa ctgttcgaag caattcaaga      3000
     gcttcctatc actgaagata acagcctagg tcgaacacag gtgctagaac acaaaataga      3060
     acttttgcct gacgcacgtc caaaaaaatt acctatctat cgccaatcct tacaaaaaga      3120
     agaaggaata cagcaagata ttcaacgaat gctaagatta ggagtaattg aagaatgtga      3180
     aggtccagta gactttttga accccattct tgctataaaa aaaccgaaca ataaatggag      3240
     aatatgttta gatagtcgaa ggctgaattc atgcactaag cgggatgatt tcccattccc      3300
     tgatatggta ggcatattgc aacgtattca aaaatcacga tatttcagta taattgacct      3360
     ttcagaatca tactatcaag tcccattaga ctgcaattcg aaaaataaga cagcattcag      3420
     aactagtaga ggcttataca ggttcaccgt gatgcctttt ggactttgta atgccccagc      3480
     aactatggca agattaatga caaaagtgtt aggccatgat cttgaaccgt ttgtatacgt      3540
     atatctcgac gatattgtaa tagtttcaaa ctcattggaa gaacatttaa ggctcattaa      3600
     aatagtagca aatcgtctga gtaacgcaaa cttaacaata aatgttctca aatcaaagtt      3660
     ttgccagaaa caaatacagt atttaggata cattctctct gaacacggct tatccgttga      3720
     tagttccaag atcaaaccag tattagacta tcctcagcca cagaacgtaa aagatgtacg      3780
     tagactgttg ggtctttcag gattctatag aagatttata ccaagttatt ctgataaaac      3840
     ggcaaaaatc tctgatctct taaaaaaggg taaaaagaaa ttcatttgga ctaaagaagc      3900
     ggacgattcg tttaaacagc tcaaatcagc cttagtatca gctccaattc tcgccaatcc      3960
     aaacttctcg ttgccatttg agatagaaac cgatagctca gatcaagcta taggcgcagt      4020
     cctcacacag aatcaggaag gtgaacgtaa aataattgct tactactcga agaaactatc      4080
     aagtacacag cgaaaataca gcgcgacaga acgcgaatgt ctaggagttt tattgagcat      4140
     agaacagttc agacatttcg ttgaaggtac taaattcata gttaagaccg acgcgatgag      4200
     tttaactttt ctcaaaacta tgtcgatcga atcaaaatcg ccgcgaatag cgcgttgggc      4260
     acttaaattg tccaaatacg acattgattt acaatacaaa aaaggctctg agaatgttac      4320
     cgcggacgca ctctcaagaa tcgtgaacat tatagatcct ttgttgccag atgaatacac      4380
     atccgcgttg aaagagcaag tagcgaaatt cccagaaaaa ttcaaagatt ttcgtatcgt      4440
     agatgacaag cttttcaaat acataacaaa cacaacgcag ctagaagata atgtattcaa      4500
     atggaaatat gtagttccat tagcagaaag attgcaaata gtcaagaaca ttcataacga      4560
     agctcatttt ggttttagca aaacattagc taaagttaga gaacgaaact attggccaaa      4620
     aatgtcaaca gacatcagaa acttctgttc gtcgtgtgaa atttgtaagg aatcaaaagt      4680
     agataactca aatccgttac caccatgtgg caagccgaaa ttgtgctcca ggccatggca      4740
     aatgatctca ctagattttc taggtcctta tccgcgatcg aaacagggta atgtttgggc      4800
     attagtaata tcagattttt tctctaaatt tgttcttatc cagtgtatgc gcagtgcaac      4860
     agccggacct gtttgcacat ttttggaaaa tatggtgttc cttttattcg gtgcacctca      4920
     aatctgtatt agtgataacg caaccgtatt tctttctcgc gagtttaaaa aactgcttga      4980
     taaatacaac gtgagccatt ggaacttagc ggtttaccat ccggcaccga accctactga      5040
     aagggttaat agagtaatcg taactgccat ccggtgtgct ctaaatgaaa gctcttccca      5100
     tcgagattgg gataaagaaa ttcacgttat cgcaaaagcc attcgtacat cagtgcacga      5160
     aagcacagga tttagcccaa cacttatgtt ctcgaggata tggaaggaaa aaggattccg      5220
     ggaacatacc atggttcgtt tttaaagaaa ggatagtaga aaatttattc ccatagctat      5280
     gaatgcactc ttgccgggaa gtgcaatgta caaatcaaaa ttacaaattc caatgagaaa      5340
     atactccatc gaggtgtaac ggttgagcca ttttgagtag gtgtcgaatt gtttccatct      5400
     ctcaccatag gccagtcaga tcctaaaacg attcgagaaa ttaatataga atacaaaaaa      5460
     ggttaccgca atgtagtgat gtcacaagtt gtttccactc attgttgggc tgaactgaaa      5520
     agaaaaatat gttaatttct tggatctgtt tgtaaagcta tgtacataaa caactgcagt      5580
     tagaactaaa ttcttcgact agcaacaaaa acaccaatag gcaggtcaat agccactaca      5640
     gttcttcgtg aactatatgt gtatagcact gtacatagta gtttaggata ggtttaagat      5700
     tcacttaggg taatagcttt gtacgtatgt aagtaacgaa acactttcct gttccataat      5760
     ccggttcttc aattgtagat gcaacgtagt ttcaggttca aagaggttcc atccatcctt      5820
     ctttttcttg tagtttttcc tttgagaagt agtgtactat cagcatcagg tatcaagtag      5880
     tcagtccagg tatttttcca tccagttaaa gcgtaaatcc ttccagcaat agtaaataat      5940
     tcacgaaact ttgtagatcc aaacattttc acgactggtt ttcactagaa gtaaacaaac      6000
     tttgacagtt cggcgaaaaa gagactgaga gaaactttca ctctcatgag cgtagccgtc      6060
     ggagagcgaa gacgttatgc ttagaattag ttagaatagt atagtataag cgcaggcgta      6120
     gtagcattag atcgaattac atcggataat tgtagggcgc gtcagaaaat tgagattgcg      6180
     tatgaacgag tcgagtatga atgaaattcg tcagtcaaac acagtatttt ttccagttgt      6240
     aactggagta atgatcgttt aagtttgagt atgagatttt ccgtaagtat acggagttat      6300
     tgttgagatt tttttccgtt gaagtacgga gtaagaaatt tatgttttcg atgtgtgaga      6360
     gtgtgagtaa gaatattaaa gtgaacaccc gtaaaggtcg tcacaaggaa tggtttaaca      6420
     gaagggatga taatgaaagc tgatcttact acgcaattga ataagttagt ccacgtaata      6480
     atgtaacttt aatgaaatat gaatttataa aaacaaagtt ttgagttgag aatgtaaata      6540
     ataagaacct tcagattatg attaaattac atttaactct gattgctgta aatttaaaat      6600
     atacaatttt atggaaacct aataaaaatt ttgaaatttt catttcaaaa tttttattaa      6660
     attggcatgg tcgaa                                                       6675
//
ID   Gypsy-152_AA-LTR repbase;    DNA;    INV; 1557 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-152_AA_;
KW   Gypsy-152_AA-I; Gypsy-152_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1557
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1030-1030 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1557 BP; 475 A; 304 C; 359 G; 419 T; 0 other;
     tgtaacggta agagtacaac cctaagtatt aaattaatta aactcgcctt taaatataca        60
     accatcgcaa acggcttaag ctactcgaac ctttcaacaa tgttcccatc ccaactgctc       120
     gaatggtata cccaatgtgt aggcgagaga aagaggaaaa atagaaactg taattttcca       180
     cgacgtaaca agccgtgatt ggatcactca agaacaatgc agacaaatct ttacatttaa       240
     aatattacga cgcaatttca tttgattggc tggtccaagg tcacgggacc tgaaaggaaa       300
     agccatttgt aaaatcaaat cacttttatt gaagtgcttg gagtgatcag ttcggtgtcg       360
     gaaaagctta aagttttaaa gtaaatctct ttgcagttgt tttgtggtga attttagaac       420
     cttaaaagaa gagtaagtgc catgaaatca ttataaaatt gtaaagctaa tttattccca       480
     ttgccagaag attatccttt gtgtgctcaa agttagtgaa aggcactagt gactaattta       540
     ggttgaagaa acgtagaccc aggtaagaca aattgtgatt caaatgtatt caatctgtga       600
     aataagaccc taaaatcacg ttgataggtt ttcccattaa cgtgggagcc cggtcggggc       660
     accgattgcc tctaattcga gagcggaaaa ggttagaaac cgcgagtaag ttgagaagtg       720
     gtgcagatta gtatcggcga gtatccacgt ggcttggaag ccacgggtac cgaagtagtc       780
     caaccgctgc tctccctggt gtcgggcgga catttaagcc gagactgccg acctaccacc       840
     caccacccgt tggaaaattc gctcgaatca agctgttctt ggccgccggc tgaatctaac       900
     ctctcgttac tagcgtgaga gacgacggct gattctaacc tctcgggccg cgagagatat       960
     cgagttgtgc acgcgttaca acaaagcaag ctttcggaat agtcaggaca gcaacctgcg      1020
     gcaggtgccg acttcgtcac ccgtctcgtc gtagaggaca gctgctaacg gccgtattgc      1080
     agatgaaaag taaagggtct tcaaattaag gtcagtgatc actgtttaga ataacaaatt      1140
     gaaatgagct caagtaggtc tagctagaca ggaattaggt tttggaatga tccatgaatt      1200
     aaatgcaagg aatcgcgtgg cgaataaata ggtttttcaa attttaaaac gaaataaata      1260
     tgcgcttcca tgagagtagg ttgtgtttgt acatatttta aataaaggtt ttctaaaatg      1320
     atcttgaatg atacttttga attagattag ataggatatt ggttggaaaa cgtttcgatt      1380
     aactcgccca cagattgaga gtttcaggcc gggcatccct gaaataaact ccgccaacga      1440
     cctccttttg gagtggcgcg taagtcgttc gcaggtttca aagaaacttt tcattccggt      1500
     attttgggga ctgagcaatg caacgctctg tccgttggtt gtaagcggag cgttaca         1557
//
ID   Gypsy-153_AA-I repbase;    DNA;    INV; 7109 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-153_AA_;
KW   Gypsy-153_AA-LTR; Gypsy-153_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7109
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1031-1031 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4732-5208] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..2128
FT                 /product="Gypsy-153_AA-I_2p"
FT                 /translation="MEVQNFEKMDYYINPNDLLQDEIDYELKLRCLAIDGS
FT                 VQEKRQKLRQAQLEEIRKQKIFRVKKSITQEYDTVKAKVQDIKHVMQFYPE
FT                 QKLISRLRHCRLRIIRANAITREQVRLKNELVYEIENLLDRYGSLVDRRMS
FT                 LPLNTHLNFSNVAELNVQKNEQVGNLNLTSPSVMGQAIVNTVQTQNRSSDA
FT                 PFLDELRIENNLSDEAVGGNDFAESDGFEEQLDLLFNDFRDASQHQRVRTH
FT                 EPLLPGRKEQDLINVLPRNQIDTSKQEINQYIQQALSEQMASLMEKISPML
FT                 DNQRSSTPNLPPPPPPPTPPPPRTAAPPLQPPAPAQPPREQVRQTRNEYYP
FT                 NSVASHVSLAGDINPIQLNRPSFESRNRWQVPISKWRINFSGDSRGPTVTQ
FT                 FLNRVEVLATNNRVSETDLLSQANFFFKEGSEAEEWYFTFCNKFTNWVGFK
FT                 HQLRLRFEQPNKDKVIERQILDRRQLPHETFNAFISAIERLAQQLTKPMSE
FT                 ERKLDILTENMKDSYKPFLTIYRIEKIDDLVAVCHALDKSMYRSYNSYPKN
FT                 RPHQINNIEETEQDSDSQYEQEEGELNAIGQALRRKKVDEKTREY"
FT   CDS           3178..5583
FT                 /product="Gypsy-153_AA-I_1p"
FT                 /translation="MLELDIIEESTAEWCNPLLPVKKSSGEWRICLDCRRI
FT                 NEITKNEAYPFPDMLGILGRIERSKYFTVIDLSKAYWQIPLEESSRDYTSF
FT                 RAGKQLFRFKVMPFGLKGAPITQTKLMNKVLGFDLEPHVYVYLDDIIITSN
FT                 SLEEHFRLLRIVAERLRRANLTISLSKSKFCQKEISYLGYTLSDKGLAIDS
FT                 TKVQPILEYPIPKTPKDVRRFVGMVSFYKQFIDHFSDLTAPITDLLKKSKG
FT                 KIVWTKDADEAFLRIKSELISPNVLANPDFNLPFTIESDASNVAVGAVLTQ
FT                 NQDGIRKPIAFFSKKLSATQRKYAPTEKECLGVILAIQKFRHYVEGSRFTV
FT                 VTDAQSLIWLRQISAEGGSAKLIRWALKLQQYDFELLYRKGSLNITADALS
FT                 RAVDAVSVSDPEYEELKRKILSNNQKFKDFRVTKDKVYKLIPSKMIDPRFQ
FT                 WKFVPPMQQRFKIIQETHDSMHFGRNKTYKKLQEQFYWPSMENDVRKYCQG
FT                 CETCKKVKYPNANPKPLMGKQKLASMPWQTISVDFVGPFPRSKAGNSVLLV
FT                 VTDLFSKFVIIQPLRDAKTTPLITFLENMVFLLFGVPEILISDNGVQFKAK
FT                 EFEKFLNKYHVSHWRNANYHPENNPTERVNRVIGAAIRSYLKEDHKEWDRD
FT                 IHKVALAIRTAVHESTHFTPYFINYGRNYISSGTEYKYIRDNGMDVVYEPL
FT                 HMNDNLREIFDTVKSNLKKAYERYAKYYNLRSNKALPTFDVGETVLKKNFH
FT                 QSNKSKQFSAKLADPFSLAKVVAKIGTACYDLEDLNGNRLGVYHATHLQKK
FT                 "
XX
SQ   Sequence 7109 BP; 2364 A; 1348 C; 1423 G; 1972 T; 2 other;
     tttggcgccc aactaacggt tttttgaatt tgtacagtat ttagttaaat tgagtaggat        60
     tagttttgaa gtttaagcga atttgtagat atttaagaat tgggattgag ttagttacgt       120
     tcattgaaga tatatttcgg attaatatta gaattggctt taaattgaat ttgttttgct       180
     gcattataca gaatttgaat ttttattttt actgaattga atttttataa taatatagtt       240
     cgattaacat ataattattt ctttttctat ttttcaatat ttttttttat ttattctcca       300
     ttttgtgatt gcgaaggtga cctgaaaata taaagaaaaa cttgttaaaa tcatggaagt       360
     tcagaatttt gaaaaaatgg attattatat taatcctaat gatttattac aagatgaaat       420
     tgattatgaa ttaaaattga gatgcttagc aattgatgga tccgtccagg aaaaacgcca       480
     aaagttgaga caagcccagt tagaagaaat tcggaaacag aaaattttca gagtaaaaaa       540
     atcaatcacg caagaatatg atacggtaaa agcaaaggtt caagacatca aacatgtaat       600
     gcagttttat cccgagcaaa aacttatttc ccgacttaga cattgtagac ttagaatcat       660
     tcgagcaaat gcgatcacaa gagagcaagt tcggttgaaa aatgaactag tctacgaaat       720
     tgagaattta ctcgatcgat atggcagttt agtagatcgt agaatgagct tgccgctaaa       780
     cactcatttg aatttttcta atgtagcgga acttaacgtt cagaaaaatg aacaggttgg       840
     aaacttgaac ttaacaagcc cttcagttat gggacaagct attgttaata cagtacagac       900
     tcagaaccga agctcagatg ctcctttctt ggatgaattg cgaatcgaaa acaatttatc       960
     ggatgaagca gtaggaggaa atgattttgc ggaaagtgac gggttcgaag aacaattaga      1020
     tctgttgttt aacgattttc gagacgcatc tcagcatcaa agagtacgta ctcatgagcc      1080
     tctattacct ggtagaaagg aacaagatct gatcaacgtt ctgccacgga atcaaataga      1140
     tacttcgaag caagagatca atcaatatat acaacaggct ttatccgagc aaatggcgtc      1200
     acttatggaa aaaatatcgc caatgttaga taatcaaagg tcttcgacac ctaatttacc      1260
     tccaccccca cctccgccta cacctccacc accccgaacg gcagcaccac cgcttcaacc      1320
     acctgcgcca gcacaacctc ctagagaaca agtgcggcag acgagaaatg agtattatcc      1380
     taattcagta gcatcacatg tttcgctcgc aggagatatt aatcccatac agcttaacag      1440
     acctagtttt gaatctcgca atcgttggca agttccgatc agcaaatgga gaatcaattt      1500
     tagtggtgac tcgcgaggac caacggtcac tcaatttctc aacagagttg aagtgttggc      1560
     cacaaataac agagtttcag aaactgattt gttaagtcaa gctaacttct tttttaagga      1620
     aggatcggaa gcggaggagt ggtacttcac attctgcaat aaatttacga actgggtcgg      1680
     tttcaagcac cagctaaggt tgcgctttga acagccgaat aaagataagg ttattgaacg      1740
     gcaaattctt gaccggaggc aactcccaca tgaaacgttc aatgccttta tttcagctat      1800
     tgaaaggctg gctcaacaat taactaaacc aatgtctgaa gagagaaagc tggatatcct      1860
     tactgagaac atgaaggata gttataaacc cttcctaaca atctatagga ttgaaaaaat      1920
     agacgatctt gtcgccgtct gccatgcatt agacaagtct atgtacagga gctacaatag      1980
     ctatcctaaa aatagaccgc atcaaattaa taacattgag gaaacggaac aagattcgga      2040
     ttcccaatat gaacaggaag agggtgaatt aaacgcaata gggcaagccc tgcggcgtaa      2100
     gaaagtagac gaaaagacaa gggaatackc tggtgctatt ccaaaaatac cgaaggacga      2160
     ccaaaataac gtcttgtgtt ggaactgtag gcaatatggc catttttggc gcaattgtga      2220
     caaacagaaa aagattttct gtcatttgtg tggacaaatg aattttgtga ccgcaaattg      2280
     tcccaataac catcgattcc catcacaagc tcaggaaaac gaaaatccag atcgatcgta      2340
     gggagtgatc catctgaagt cacggaaaac tccccagata gaggttctca aagaactgaa      2400
     aatgatcaat catattcaaa atatgccaca gcgttccaaa ttaatacaaa acctaatcgg      2460
     tgcccatatg ttaaagtcga aattctcggg acaccaatta tggcgttact agactctggg      2520
     gctagtgtaa gcattttgag ttccagagaa atagtagaga aacacaagtt caaagttcaa      2580
     ccgatcaact tgatagttaa aactgcagat gagactcccc taaactgtgt aggagtgata      2640
     cagatcccat tcacatttca aggaaagact aatgtcattc cgacactctt gattccagaa      2700
     gtttcaaaac cccttatact ggggatcgat ttctggaatt catttggaat tgctccagta      2760
     gtggtagatc ataatggaat gcaaccaatc agtactgttg gcgatcacgg actgaacatg      2820
     attgaatcgt tttttggtga tccagatgag ttgattcttt ttacggttga accaaacgga      2880
     ccttcagtgg tagaagagga ttcaaccgaa gatatttcct tagaacttcc gtttatagaa      2940
     gactctgaaa atagaaacat aacaaatatt attacagagc atactctaac aatacaagak      3000
     cgagaagaac tcaatgaaat aattgaacta tttagaacta ctaataatgg aaaactagga      3060
     agaacccatc tgtgttccca caaaattgaa ttggtcgacg gtgcccaacc taaaaagccc      3120
     cctcagtaca gatgctcacc ccatattcag aatgaagtgg ataaagaaat agcaagaatg      3180
     ttggaactag acatcataga agagtcaacc gcagaatggt gtaatccgtt actgccagtc      3240
     aagaaatcgt ctggtgaatg gcgaatctgc ttggattgcc gcagaattaa tgaaataaca      3300
     aaaaatgaag catatccgtt tccagatatg cttgggatcc ttgggcgcat tgagaggtcg      3360
     aaatacttca cggtaatcga cctatcgaaa gcctattggc aaatacccct ggaggaatcc      3420
     agcagggatt acacttcctt cagagctgga aagcagttgt ttcgttttaa agtaatgcca      3480
     tttgggctga aaggtgcgcc aattactcaa acgaaactga tgaacaaagt tcttgggttc      3540
     gacttggaac cgcatgtcta tgtgtacctt gatgatatta ttatcacgtc taatagctta      3600
     gaagaacatt ttcgccttct gcgcattgta gcagagcggc tacgacgagc aaacctcaca      3660
     ataagcttaa gcaaatctaa attttgccaa aaagaaatca gttatttagg ctacactttg      3720
     tcagataagg ggctagcaat agacagtaca aaagttcaac caattttaga gtacccgatc      3780
     cccaaaactc ctaaagacgt aagaaggttc gtgggtatgg tcagttttta taaacagttt      3840
     atagatcatt tcagtgacct aactgcaccc ataacagact tgttaaagaa gtcgaaaggg      3900
     aaaattgtat ggaccaaaga tgcagacgaa gcttttttac gaataaaatc ggagttgata      3960
     tccccaaacg tattagccaa cccagatttt aacctgccct tcactattga gtcggatgct      4020
     tcaaacgttg cggttggagc cgttctgact caaaaccaag acggaattag aaagcccata      4080
     gcattcttct ccaaaaagct ctctgcaact cagcggaaat atgccccgac tgaaaaagag      4140
     tgcctgggag taatattggc catacagaag ttcagacact atgtagaagg gtctcgtttt      4200
     actgtagtga cagacgctca aagtctgatc tggcttcgcc aaatcagtgc cgaaggaggc      4260
     tcagcaaaac tgatcagatg ggcactgaaa ttgcaacagt acgatttcga actgttgtat      4320
     cgaaagggct ccttaaacat cactgctgac gcgctgtcta gagcagtcga tgcggttagc      4380
     gtaagtgacc ccgaatacga ggaactgaaa cgaaaaatat tgtcaaataa tcagaaattt      4440
     aaagatttca gggtgactaa agacaaagtg tacaagctga ttccatccaa aatgattgac      4500
     cctaggtttc aatggaaatt tgtcccacca atgcaacaac gatttaaaat cattcaggaa      4560
     actcacgatt ccatgcattt tgggcgtaat aagacataca aaaaattgca ggagcaattc      4620
     tattggccat caatggagaa tgatgtccga aagtactgcc agggatgtga aacttgtaaa      4680
     aaggtcaaat atcccaatgc taacccaaag ccattgatgg gcaaacagaa gttggcatcg      4740
     atgccatggc aaacaatatc agtcgacttt gtcggaccgt tccctaggtc caaagcaggc      4800
     aattcggtcc ttttagtagt tacggacctc ttctcaaaat ttgtaatcat tcaaccccta      4860
     cgggatgcaa aaacaacacc tttgatcaca tttctcgaaa atatggtatt cctccttttc      4920
     ggagtaccag aaattctgat ctctgacaat ggggtgcaat tcaaagccaa agaatttgaa      4980
     aagtttttga acaaatatca tgtgtctcat tggagaaatg ctaactacca ccctgaaaac      5040
     aaccccacag aaagggttaa ccgggtgata ggagcggcca tccgttcgta tttaaaggag      5100
     gaccataaag aatgggacag agatatacac aaggtagccc tagccattag gacagctgtc      5160
     catgaatcga cacattttac accctatttt attaactacg ggcgtaacta catcagctca      5220
     ggaactgaat ataagtatat aagggataat ggaatggatg ttgtctatga accattgcat      5280
     atgaacgata atctgcgtga aattttcgat actgttaaat caaatttgaa gaaagcatat      5340
     gaacggtatg ctaaatacta caaccttcgc tcaaataagg cactcccaac gttcgatgta      5400
     ggggagactg tcttgaaaaa gaactttcat caatcaaata agagcaagca attctctgct      5460
     aagcttgctg atccattttc gttggctaaa gtagtagcaa aaatagggac agcgtgttac      5520
     gacctagaag atctcaacgg aaatcgtttg ggcgtgtatc acgctacgca tctacagaag      5580
     aaataatcaa ttgaaccaaa tttacagcta tgtctgatgc acactaaagc acagttacaa      5640
     tgagattagt ccaaaaaaac acaaacttac ggtttggcaa ctccgagttc agcgggaggg      5700
     attggcttca ataacagttt tcatcctaca agcaatcccc tcttcgcgtc tcgatggcat      5760
     caccctagga ctgcttctga cctaaaagaa gaagaagcat ttagttctag tggattgata      5820
     aaaagctatg taatagaata tgcaagagaa aaatcggttg ccctagaacg atcagtcagc      5880
     ttaaccaccc aagcccggag ttcaccgagg tgagctgaga ggggagagta cgctggaagt      5940
     cggtgcgagt ctgtagggcc agacgatgac cagactgacg ttcaaaccta gattcttctc      6000
     ttacatatcc ttggacaaag tttcacaaca caaaaacact tcgaacaagt cttaagttca      6060
     caattttaca gctatgtaca aaaacaaacg ataataaaca ctgtgaacgt ttaccacagg      6120
     cactaagcgt aaacattgta tatagtctgt ttttaagcta tttctcaact taatcaatga      6180
     attatcactt attttcgcat tgttctgttg tacataatat gttttatagt tgttcagtgc      6240
     gggggcgtaa tgttttcgtc cgatgcgcag tgagcgacat ttagtgcgta gatgattacc      6300
     atgtttccat agatccacca atgtaaattt cctgttagag ttccatgtat cagcatccat      6360
     agtccattcc gtgttttcca tcacaattta caatagtttg tttagttttt cgcgtagttt      6420
     cagcagtttt tttttttttg ataattctca caatcctgaa ccgattccat gttttttctt      6480
     gcttcacttt gttttgattg tctttctttt tcacattcac cacagagatt ttgacagtac      6540
     gatatgtcaa agcttttcgt cgatttgttt gacatgtcga tcaatcagtt tacagtagag      6600
     gctgttgcaa tagggatacc gtaggttgat gttattttgg gagctctgat agttcctgca      6660
     acaaattaag tagtttggtt gatgtttgtt cggatgtttc cggatagttc aaaatcatga      6720
     tttaatgttg gtttagaagt ggctgagaag tttctcggcg attcaagtaa ggatagggag      6780
     atgcgttgtg agctacgcaa atggagtttt tcacctaggt atcccatatg aacggcacaa      6840
     tataattggc gaacttaaaa aaatagggtt tagttcttag atacgcatta gatattagag      6900
     ttaattgtaa atattcagaa taataattga aaaataccat gaattaaata taagtaaacg      6960
     tatatatgca gcaacacaaa agtttttcca agtagtttaa aaaaaatacc agagcaattt      7020
     tatcgtctac agatgactag ttattttttg aaccacaaaa aaaataaatt cagtcccttc      7080
     attcattttt tttagttggt agggggaag                                        7109
//
ID   Gypsy-153_AA-LTR repbase;    DNA;    INV; 1505 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-153_AA_;
KW   Gypsy-153_AA-I; Gypsy-153_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1505
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1032-1032 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1505 BP; 471 A; 295 C; 342 G; 396 T; 1 other;
     tgtaacgagg ttacagtatt ttaatgtaat ctttaattac aaaaaccaaa acagtgcgaa        60
     atgcaatatt atttccgtgt agccactttt cgcgtaccaa gtctctgatt ccacaagttg       120
     cgatgcaaca gtagagtcct tatcaaaact gaaaacttgc gttcttaaag gaagtacacg       180
     aaaaacgacg aacatttacg aactcgggaa ccgccggtac agggtaatag cccaaaattt       240
     ctgaaattgc catcctcttt aatctaaacc gtcgaacagt taagacgctc tttgcaaaaa       300
     gttaaatata aaattaaaag tcaatcagtg attttataca atctagttaa gagtgaaagg       360
     tgtgtacgca gttgaaaagt aagatttagt agaagtagaa atttgccaag tttgttaaaa       420
     taaatattaa ttcccattga acagtttttt tgaaaacgtg ctctgaacaa aagtttagat       480
     tagttctggt aatttcgtgc gtgtgtgcaa tcaggtaact cttgtaatac aacgagaaac       540
     aatgttagaa tctaactcca aatactgtct cgcttgaaga actttccttc aagtgaaggt       600
     ccacccttag gacggggcga atagtccaaa gcctccaccg tcgacggtat tcatcgacgt       660
     ggtgtacgtt gggccgatga gcatagtgcc agtgcagcat aatcagcctc gtgtcgatgt       720
     agcgagtgac agatcgccgt agccaggacc accatcataa ttatttcggc caacaacaac       780
     aacctcaaat tcaccacgct tccgagaacg tcacagagcg agcatgattg tgacgctcag       840
     aacgtaacgc actgtcttcg ctagcggccg ctagagggcc gtgagaattt gaaacgaacg       900
     cacgtgtacg ctacccgacc aaaaaggaat tcgaatcgag gagattggaa cggagaaagg       960
     attcggagtg taaaggaaca ggattcgttg gatcaggaaa ggaaggataa ggaataagga      1020
     caatgggaaa ggatcaagta agcgctacct aaaattgtaa atactaaccc cctacatttt      1080
     aagatgaaga ttataaagcc atgagcaaaa agtgaattga ataaataggt acctaatgaa      1140
     ttttcaagcc ttggcaagat tttagttttt gcacttttag ataaaagaga actggtattt      1200
     tcagatttcg gttttcggga cgagtagaat aggctctggg taggaaaacc tacaaaggaa      1260
     acctacccac cctsaagtgt tgaaatcgtt tcttgatagt ttgtttttat tcgttggagg      1320
     tcgtgtacgg atgtttcggt cgtgggtcga cggtcgcgat taaggactcg ccctgaggtc      1380
     tcgcagccgg gtcgggattc tttgtttgag acaactcgct ccttcgcggc aagataaaac      1440
     ttgcctggcg cttaagcgga ggtagtatta catccgaggt ttttgccgcc cctagtcccg      1500
     ttaca                                                                  1505
//
ID   Gypsy-154_AA-I repbase;    DNA;    INV; 5625 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-154_AA_;
KW   Gypsy-154_AA-LTR; Gypsy-154_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5625
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1033-1033 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [2437-3051] - Reverse transcriptase
CC   Positions [4593-5060] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           906..2270
FT                 /product="Gypsy-154_AA-I_1p"
FT                 /translation="MVFEGKQLSFEPFNDKVDTHDLRREWEEWHRAFELTL
FT                 ELRNLESQHEKLVLLLASGGRGLQRIFYNLRPSSDEIYPGPVKVPLMPVEV
FT                 PEYDNAIKRLNKFFIGKRNERIELEVFRSMKQTGDETFNQFLLRLRGQAAR
FT                 CDFSDREEKEVLQQITMGAQDERVRDKGLEDVMDLDELINYAINREILMKQ
FT                 KGKSKLLGDEQPGSSVAAVHQNWNKRQNYNDANQVKHRRNLEVENRQTVGK
FT                 RDQSECGRCGSSNHKTESPTCYARNARCNGCGRLGHYMRKCRYLGRNVTRQ
FT                 RAGSDTRYRRGRPNADLNAVNRYEEWTKETKPLTDEEPRPKVKTLIEPDVC
FT                 SNGMVECSIDNYPVTFLVDSGSAINAVTEEVWNSLVRNNATVYKTKLQCNR
FT                 TFTAYASQQPLRVRAMFEAWISVNDSKPSCYAEFFVIEGATKSLLSKTTAE
FT                 LLKILKMWSR"
FT   CDS           3660..5597
FT                 /product="Gypsy-154_AA-I_2p"
FT                 /translation="MMYLPSRYLGTVFGEEQTKAFDDLRCELANSARKLGY
FT                 FDSADETELYVDASPVGLGAVLVQRYRGSPRIICFASKGLTAAERVYPQTQ
FT                 REALAVVWAVEKFYLYLFGLRFTIFTDHKTLEFIYGNKHVEGKRALSRAEG
FT                 WALRLQPFDFEVKHIAGLMNISDPLSRLCSQIDAPFDDNADHYLFAVGEGP
FT                 TAISLEEIRDETKRDEILIAVKLALESGNWHPDLFRFQAFSKELGISNGII
FT                 IRNERIVLPKKLRSRALDIAHRGHPGIVAMRRNLREKVWWPCMDRDVIEKI
FT                 EECAGCAAVRSQMPPEPMFRKEMPDRAWQQIAIDFFSAKECATFLVVIDYY
FT                 SRFLQVVEMKSTTATKTVDALEAIFLDHTYPECIRSDNGPPFSSEEFANYC
FT                 SIKNIKLVRTIPYWPQMNGLVERVNQGILRALRIAKATNTDWRKALKEHVY
FT                 IYNTTPHSVTEKAPMELLTGRPVKDLLPSLRTDPAWNRDESVRDKDAIRKM
FT                 QGKIYADQRRHAKTSKIEVGDEVMIKNFNSGKLEPTFRLEKFKVVSKSGND
FT                 TTVKGEDGVTLRRSVTHLRKWPKSPSASFQQTSSELTPASPSSLTSSNQGV
FT                 DGTSLHGCSNEGKRKNGNAHGEQATPAKRPMRNKKVPKRYVQVINTVE"
XX
SQ   Sequence 5625 BP; 1697 A; 1147 C; 1354 G; 1427 T; 0 other;
     ttttggcgca ccgtcggtag gatatgattc cgcaagctat aaaattataa ttacgattat        60
     aataaaaaaa attgcagcag cgaaaaaaaa aacataacca aagaacaaat gtttaatgcg       120
     agtccggttt tgtaccgaag cgcaccaata ccagtctgta tgctgtgaaa ttagcgagtc       180
     cggtcttgca ccgaagcgca ctagcaccat ttgcaaatgt gatttaaaaa aagcgagtcc       240
     ggctcagtac cgaagcgcac caatactgtt cagcgagtcc ggtttttgta ccgaagcgca       300
     gagacatatg acaatagtat agtcagcgag tccggccttg taccgaagcg caccactaca       360
     aatcagccca gcccatacac tgggagcaaa tatgagtccg gtacacacac ccaagcgcac       420
     cattacaatc ttagctcacc agcttatctt tggcttgcaa aaaagagaaa aaaaaaaaca       480
     ccagaaaaaa aaagttttga aattccatgt cttgatttgt ttttttttaa tgtgttttat       540
     tacgtattat tctcaatgag ttttaaatat ctaacggtat tgacgtcctt cctgattgtt       600
     aaatcatcgg catgttaacg atttcaattt aattcacgat tatttcaaac ttcctagacc       660
     tcacgctgaa tattaaagta atgatatatg ttcataaact aggtcgatcg tttctttcgg       720
     tgtacctatc gaactgtcat ctgtttacag aacgatgaac ataaacattg agtgtcggtt       780
     ttgtttttat ctgctggtgt taagtttgct cataaccgtc gtctacgtga aactattgaa       840
     gtaaattgca aagaacttaa gaaaatcaag tgctataatt acattcttat gaccaacatt       900
     tacagatggt tttcgaagga aagcagttat cgtttgaacc tttcaatgat aaggtcgaca       960
     cccacgattt aaggcgcgag tgggaggagt ggcacagagc tttcgagttg acactggagc      1020
     tacggaatct cgagtcgcaa catgagaaac tcgttctgtt gctagctagc ggcggaagag      1080
     gtctacagcg tatattttat aacctgaggc cgtcgtcgga tgaaatctac cccggacctg      1140
     tgaaagtgcc attgatgcct gttgaagttc ccgagtacga taacgccata aagaggctaa      1200
     ataagttctt tattggcaaa cggaatgaac ggattgagtt ggaagtgttc cgttcgatga      1260
     aacagacagg tgatgaaact tttaatcaat tcctgttgag gcttcgtgga caagcagcga      1320
     gatgcgattt ttccgaccga gaagaaaaag aggtacttca acaaatcacc atgggcgcac      1380
     aggatgaaag agtgcgcgac aaggggcttg aggatgttat ggacctcgac gaattgatca      1440
     attacgccat caatcgtgaa atcctcatga agcaaaaagg aaaatcgaag ctacttggag      1500
     atgagcaacc gggatcatca gtagctgcag tgcatcagaa ctggaataag cggcaaaatt      1560
     ataacgatgc gaaccaggtc aaacatcgta gaaatttgga ggtcgagaac cgacaaaccg      1620
     ttggtaaacg ggatcagtcc gaatgcggcc gatgcggatc atcaaaccac aagaccgaat      1680
     ctccaacctg ttacgcccgg aatgcacgtt gcaatgggtg cggaagactt gggcactaca      1740
     tgaggaaatg tcggtacctt ggtcggaacg tgaccagaca acgcgctggc tccgatactc      1800
     gatacagacg aggtcgcccg aatgctgatc tgaatgctgt taaccgttac gaagagtgga      1860
     cgaaggaaac aaaaccgcta actgatgagg agccgagacc aaaggttaaa actctaattg      1920
     aaccggatgt ttgtagtaat ggaatggtag agtgttcgat agacaattac ccggtgactt      1980
     tcttagttga ttcgggatca gcaattaacg ctgtcacgga ggaggtatgg aacagtctcg      2040
     ttagaaataa tgcaactgta tacaaaacaa aactacaatg caatcgaaca tttacggcat      2100
     acgcgagcca acaaccgtta cgagtaagag ctatgttcga agcatggatt tcagttaatg      2160
     attcgaaacc cagctgttac gcagagtttt ttgtgataga aggagcaacc aagtcactcc      2220
     tgagcaaaac taccgccgaa ctattgaaaa tactcaaaat gtggtctcga tgactgaaca      2280
     atgttgatgt gtcgaccgaa cattttccca aatttcccaa cgtacttgta taagctgtcc      2340
     attgataagt cgattgttcc tcggaaaatt gcttacctta aagtacccga agcactgaaa      2400
     gagaaagtgg atatgaagat tatggatatg ttgcgttctg acgtgattga accagccaac      2460
     ggtccagcgg aatggatttc acctatggtc gttgtgccaa aaggcaagga cgacatccgg      2520
     ctctgtataa atatgagaca ccccaacgaa gcgattcagc gcgagcattt tccattaccg      2580
     attatcgaaa ctatttttaa ataaattgcg gggtgctacg tatttttcga agctcgatat      2640
     aacgtcagca tatcatcacg tggagctgca tccagagtca cgaagcatca ctacgtttat      2700
     gacggataga ggtctaatgc ggtttaaaag gctgatgttt ggcataaact gtgcccctga      2760
     gatctttcag cggatcatga ctcagatgct tgcaggtacg tttttatgtt ccttatgctt      2820
     ttaaggggtt gggttaaatt acatgatgta atacaatact ctgttttaac tcaggtgttg      2880
     aaggggtaat cgtttacatt gacgacattg tcgtatttgg tagaaatcag caggagcatg      2940
     atgaacgact gcgacaggtc ctggagattc ttgagaaaaa caacgctaaa ctcaacagag      3000
     acaagtgtgt atttggcgtg ggtgagctcg aaatccttgg tttcaaggtg agtgctgcgg      3060
     gtatcagtcc aacggaagag aaaattgaag ctatcaagaa cttcagaaaa cctgaaagca      3120
     aggaggaagt tagaagtttt ctggggcttg taaacttcgt aggtcatttt atccctcatc      3180
     tttcgactag aacagaaccc ttacgtcagt ttattcgtgg tgatgctact gtccaagatt      3240
     gattgagggg aggcaggatc aggcagtcgg tgggtgcgaa gtgaggtcgg ttacagggga      3300
     ggtgaaagcg acggctgctg gcgagtatgg tttcgtgtat cgcttcatgg gaacgttagg      3360
     ggttaccaca ggacggaccc tactggtaag tgaaaatttt ctcccgcatt tctgggcgac      3420
     gtttacctct tcgtgtgttt cagaggtaaa aattgcggtg ttttatgata aggtgaggaa      3480
     aagctactag gatgctacat ttcttctatg actggtgaaa cgaaaagccg aacgaaacga      3540
     gagggagtgt ggcaatgaaa aatgtttgga ggtacgtctt gagttagcac cctcgaacca      3600
     aaacaaactc gtcagctgtc acctggtatt tcaaaatggc gaattcaaca tgctgacata      3660
     tgatgtacct cccttccaga taccttggta ctgtctttgg cgaggagcaa acaaaggcat      3720
     ttgatgacct gcgatgtgaa ctggctaaca gcgcaagaaa actaggctac tttgattcgg      3780
     ctgatgagac cgaattatac gtagatgcgt ctcccgttgg cctcggggct gtgctggtac      3840
     agcgatatcg aggttccccc agaatcattt gcttcgcgtc aaagggttta actgcggccg      3900
     aacgtgtgta tcctcaaaca caacgtgaag cgctagcagt tgtatgggcc gtcgagaaat      3960
     tttacttgta cctcttcggt ctacgcttca ccatattcac ggaccataaa acgcttgagt      4020
     tcatttacgg aaacaagcac gtagaaggga aaagagctct ttcgagggcc gaaggctggg      4080
     ctctgcgcct tcaaccgttt gattttgagg ttaaacacat tgcagggctg atgaacatat      4140
     ctgatccgtt atccagattg tgctcccaaa tagatgctcc gtttgacgat aacgctgatc      4200
     attacctatt cgccgtcgga gaaggaccca cggcaatatc gctcgaggaa attagagacg      4260
     aaaccaaacg ggacgaaata ttgatcgcag tcaaactggc acttgaatct ggaaattggc      4320
     accctgattt attccgcttc caggcatttt ctaaggagtt ggggatttcc aatggtataa      4380
     ttattcggaa tgaaagaatc gtacttccga aaaaacttcg ttccagggct ctggatattg      4440
     ctcatagggg ccatcccgga atagtagcca tgcgtagaaa tttgagggaa aaggtgtggt      4500
     ggccgtgtat ggaccgtgac gttatcgaga aaattgagga gtgtgctggc tgcgcagctg      4560
     tcagaagtca aatgccaccc gaaccgatgt tcagaaagga aatgccggat cgtgcttggc      4620
     agcagatagc tatcgacttc ttttcggcga aagaatgtgc tacgttttta gtagtcattg      4680
     attattatag cagatttttg caagtcgtcg aaatgaaaag tacaacggct actaaaacag      4740
     ttgatgcatt ggaagcaatt ttcttggatc acacgtaccc ggagtgtata cgcagcgaca      4800
     acggcccgcc attttcgagt gaagaatttg ctaattactg ttcgattaaa aacatcaagc      4860
     tcgttcgcac aataccgtac tggccccaaa tgaacgggct cgtagaaagg gtgaatcagg      4920
     gtattcttcg tgcactcagg atcgctaaag cgactaacac ggattggcga aaagcattga      4980
     aggagcatgt gtacatctat aatacgactc ctcattcggt tactgagaaa gcaccgatgg      5040
     aacttctaac aggacgtccg gtaaaagatc tactaccgtc cttgcgaacg gacccagctt      5100
     ggaaccgcga cgaaagcgtg cgtgataaag atgccattag gaaaatgcag ggtaaaatct      5160
     atgctgatca gcgtcgacat gccaaaacct ccaagataga agtaggagat gaagtgatga      5220
     tcaaaaactt caatagcgga aaactggagc ctactttcag actggaaaaa tttaaagtcg      5280
     tcagtaagtc tggaaacgac actaccgtta aaggcgaaga cggggtcacg ttgcgtcgct      5340
     ctgttaccca tcttaggaaa tggcccaaat caccatctgc atcatttcaa caaacttcat      5400
     cagaactaac gccggcctct ccatcatcgc tcacatcatc taatcaagga gtggacggaa      5460
     catctttaca cggatgctca aatgaaggaa agcggaagaa tggtaatgca catggggaac      5520
     aagccacgcc tgcaaaacgt cccatgagga acaaaaaagt gcctaaaaga tatgtacaag      5580
     ttatcaatac agtcgaatga tttttttttt tgagtaggag aggga                      5625
//
ID   Gypsy-154_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-154_AA_;
KW   Gypsy-154_AA-I; Gypsy-154_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1034-1034 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 214 BP; 67 A; 17 C; 73 G; 57 T; 0 other;
     tgtagagtat ggtaaactgt tgagttggaa ataagagtgt aactggagag atatgtagaa        60
     aagcggggta gagagatagg agagtcggaa ccggagggga cttggtgttg tgtattgtaa       120
     gcggacggtt gtggaaaata aacgagtaga aatctaaagt gttttgtgaa ttggtttgga       180
     gtgttggcgt taatccgaaa ggtaagactc taca                                   214
//
ID   Gypsy-155_AA-I repbase;    DNA;    INV; 6803 BP.
XX
AC   AAGE02017419;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-155_AA_;
KW   Gypsy-155_AA-LTR; Gypsy-155_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6803
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017419; Positions   67599   60797.
XX
CC   Positions [4384-4860] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           602..1660
FT                 /product="Gypsy-155_AA-I_3p"
FT                 /translation="MPLWVSVIRDKITDEASQALVSRHTECEWDAIKKVLI
FT                 EYFGDKRDLYDLVSQITYLQQNRKSITEFYNECQELLADIIDKLALDNTTK
FT                 HCVHSLSEGYESMIKNSFIDGLNEPFSVLTRVTNPGTLLEAYHAALGIYNT
FT                 EQRKKDKFSRQFLKVQTHQISNKPPLQGAAPNKLQSPNQRFDHNLGRPPYQ
FT                 NFGYNQYRGYQYRGNFVNQQNNRNNNFVPQPNNRYNNLVPQQNNRFNPPQN
FT                 RPPIKAEATSQQLRQNPQQNQNFYHANSLYHHETFHPQNFQHTNFPHHEPP
FT                 YYQNEPPNGEHCENQSPEYESQYDQQNQEEYPNNIQPENTESAMESENLNF
FT                 HFLLDIPQEE"
FT   CDS           1660..5163
FT                 /product="Gypsy-155_AA-I_1p"
FT                 /translation="MTNNFLPYIIIKSPKFGVIKFLIDTGANKNYISPKLV
FT                 ALNNVMTGAKHKITNISGTFFVNKFTYSNPFMDYDNTLPPQRFFLFDFHNY
FT                 FHGLIGYESLRSLGAVIDTAKDVLKINSISIPLYKKYPETVNLNANETKAI
FT                 FMPTSASDGDFLMGEEIELVPNVHILSGIYTSKNHQTEILIHNFSKDTKEI
FT                 NLGDTLNVEINNFEITSPQKNNTDKENPLRKQLRMDHLNSEERSKLTKMLS
FT                 KYQDVFHQEKQPLTFTNAIHHEINTKDDLPVYTKSYRYPFCHKEEVQRQII
FT                 KMLEQGIIRHSNSPWSSPVWVVPKKLDASGQRKWRLVIDYRKLNQKTLDDR
FT                 YPIPNITDILDKLGKCQYFSTIDLASGFHQIELAQKDIRKTAFSVDGGHYE
FT                 FVRMPFGLKNAPATFQRVMDNILRKHLGVRCLVYMDDIIIFSTSLQEHLQN
FT                 LKMILDTLREYNMKIQIDKCEFLQKEVAFLGHIVTPEGVKPNPEKIKVIQE
FT                 WPLPNNEKELKGFLGMIGYYRKFIRDFAKIAKPLTQQLRKGETIQHTPAFV
FT                 SAFKRCRNLLTSSHVLQYPDFTKPFVLTTDASNYALGAVLSQGPIGKDKPI
FT                 AFASRTLTRAEENYSAIEKELLAIDWVCKYFRPYLFGRKFTLYTDHKPLTY
FT                 ALDLKTSNDRLIKMKLRLEQFNYDIKYRPGKQNVVADSLSRIKPTINVNEQ
FT                 ETLPSSSSDDSEPDENNDNDDNESNDDSDSGTVHSSSSDASNLIKMTEKPI
FT                 NVFKNQILITEGPKNDESYEEIFPSIFRRTITRTTFGMVNAVDIFRDYMHP
FT                 TRTNCILCPERWLKWVQLAYRNHFSRNKTFKIVLTQSILQDIPSDEEQDQI
FT                 IEETHNRAHRGIEDNCRVISKKFFFPKMRNKVTSFVNLCTTCLENKYERNP
FT                 YKIKFAYTPIPKKPLDILHVDIFISNPNIFLSAVDKLSRYAMLIPVKSRSI
FT                 PDIKRGLTKLFTTFGTPKMIVCDNEVALKAIEIRGLLQRLDVETYNTPSDH
FT                 SEVNGIVERFHSTLSEIFRCIRNKFPDLSNKEIYKIATNLYNTTIHSVTKL
FT                 KPLEVFFGVKDGEERPLNLQRILENRNEIFDEVVQELEARQKKQIDARNKF
FT                 REEDPNFEEHDKIYVKTTGIPNKKKAKFRKQIVKNNRRKTIIDQRNIRLHK
FT                 SNLKRKRKL"
FT   CDS           5344..6804
FT                 /product="Gypsy-155_AA-I_2p"
FT                 /translation="MRTTFKNYKNNERSHSSDKNYRLQNSNGIHKNYTPDQ
FT                 FSIEEAIEQITNTFYNKLTPKNELHEVIKFRVKRLYSTLYGLKPQQTHRHR
FT                 RWDSIGTAWKWIAGSPDAQDMYIINSTMNEIIDQNNYQYRINESINKRIAQ
FT                 LTGTINQMANVINNNKANLEVLDAITIMLNVDVINELLDNIQEAVTLSKIS
FT                 VTNNKMLSTCEVNVIKSTLHEQGIEVNFPDEALQFVTPKIAVKQGDLLYIL
FT                 HVPHLENSTSTVIRIFPLIVDNQIIKSYPSHIIRHGHRLFTTANPRDFVQR
FT                 SSNIEEFEDECIQNIILGKRSKCNSIFKDETTQQLANENTVIISNAKNHTL
FT                 STNCGPEDRNITGNFIVIFRNCTVHFNNQSFTSTEMTVDTEVIHGAFHNSF
FT                 IEWNLHKQHDIATISKTAVSNRQQLNHVYLRQDSLHFKLWTTFGGFSFSTI
FT                 LGFVIVGVLIKIIYKNRTNGTGRSSLRGGLVTEVTEQHEVTP"
XX
SQ   Sequence 6803 BP; 2432 A; 1518 C; 1191 G; 1662 T; 0 other;
     ttacattttt agcgaacgaa tagctatctt ttaggtagtg agattagtga agtaacggcg        60
     attagcgcac aaaatttctc cggttaacaa taatttttaa ttagcgaacc aaaatcctcg       120
     tatcaaacga tcgggatttt gagaattaag agaattcctt tcggaaaccg tttccaaatt       180
     tttaattcgt gaagttcatg caaacaagaa gaatgacgga agagctatcg agacaaatcg       240
     aacagctcac cgctcagctt acagagcaga tcgcctcact ctcacaagaa cgcgaagaca       300
     gcgaagaggc tgcaccaaac cgttcgattg agcaactagc tgcccaactc gaacagcaga       360
     ggttgcaaat agcctcgctg acgcaaagca gattagacga actggaagta ggaccctcta       420
     ggatggtaac aacaccaaac agagtggctt cctttaaccc gtctcgtgtt ccggactcaa       480
     tcaagctgat tgttcctata aaggagataa gaaatctcta tcagcgtgga taacttctgt       540
     agaaaagaag cttgagcacg caaagagtct ctgctcctct actgtggaaa ttgacgctgt       600
     catgccacta tgggtgagcg taatcagaga caaaattaca gacgaagcta gtcaagctct       660
     cgtctccagg cataccgagt gtgaatggga tgccatcaaa aaggtattga tcgaatattt       720
     tggagacaaa cgagatctat atgatcttgt ctcgcaaata acttacctcc aacaaaatag       780
     aaaaagcata accgaattct acaatgaatg tcaagagcta ttagctgaca tcattgataa       840
     attggcatta gataatacca ctaaacattg tgtgcatagc ctgtccgagg gttatgaatc       900
     aatgattaag aactccttca tagatggtct aaacgagcca ttttctgtgc tcactagagt       960
     aacaaacccg ggcaccctat tagaagctta tcatgcagct ttagggatat acaatactga      1020
     acaaaggaaa aaggataaat tttcaaggca atttctcaag gtgcagacgc accaaatttc      1080
     aaataagcca ccactccaag gagcggctcc aaataaatta caaagcccga atcagagatt      1140
     tgaccacaat cttggtaggc ctccctacca aaattttgga tacaaccaat acagaggtta      1200
     ccaataccgt ggaaattttg ttaatcagca aaataaccgc aacaataatt ttgttcctca      1260
     accaaataac agatataaca atcttgtccc tcagcagaac aatcgcttca acccaccaca      1320
     aaatagacct ccaatcaaag cagaggctac gtctcaacaa ttgaggcaaa atccccaaca      1380
     aaaccaaaat ttctatcacg caaactctct ttatcatcat gaaacctttc atccccagaa      1440
     ttttcaacat actaatttcc cacaccacga acctccttac taccaaaatg aaccaccaaa      1500
     cggtgaacat tgcgagaatc aatcccctga atacgagtct caatatgacc aacaaaacca      1560
     ggaagaatat ccaaacaata ttcagcctga aaacactgaa tccgctatgg aaagtgaaaa      1620
     tttaaatttt cattttctcc tggacattcc tcaagaggaa tgacaaacaa ttttctaccc      1680
     tacattataa ttaagtcacc gaaatttgga gtgattaaat ttctcattga cacaggtgcc      1740
     aataaaaatt acatctcacc aaaattggtc gcattgaata atgtaatgac tggtgcaaaa      1800
     cacaaaatta ctaatataag cggtacgttt tttgttaata aattcacata ttctaaccca      1860
     ttcatggact acgacaacac ccttccaccg caacggtttt tcctgttcga tttccataat      1920
     tatttccatg ggctgatagg atacgagtcc ttgaggtcat taggagctgt catagacaca      1980
     gcaaaagatg ttctgaaaat caactccatt tcaatacctc tatataaaaa atatcccgaa      2040
     acggttaacc taaatgccaa tgagaccaag gctatcttca tgccaacatc tgcttcggat      2100
     ggcgattttc ttatgggaga agagatcgaa ttggtcccaa atgtacatat cctatctgga      2160
     atctacacca gtaagaacca tcaaaccgaa attttaatac acaattttag taaagatacc      2220
     aaagagatca accttggcga tactcttaat gttgaaataa ataacttcga aattacttcc      2280
     cctcagaaaa acaacactga taaagaaaac cctttaagaa aacaactgcg aatggaccat      2340
     ttaaattccg aagaaagatc aaaactaaca aaaatgctaa gtaaatatca agacgtattt      2400
     catcaagaaa aacaaccact gaccttcaca aatgccattc atcatgaaat taatacaaaa      2460
     gatgatcttc ctgtatacac aaagtcttac agatacccct tctgccacaa agaggaggta      2520
     caaagacaaa ttattaaaat gcttgaacag ggcatcattc gacactcgaa tagcccctgg      2580
     tcgtccccag tatgggtagt gccgaagaag ctagatgctt ctggccaaag aaaatggcga      2640
     ttggttatcg actatagaaa gttgaaccaa aaaactttgg atgatcgata cccgatccca      2700
     aatattactg acattctaga taaactagga aaatgtcagt atttctctac aattgatcta      2760
     gcttccggtt tccatcaaat cgagctagct cagaaggaca ttcgaaaaac ggcttttagc      2820
     gtcgacggag gacactatga gttcgtacga atgcctttcg gcttgaaaaa tgcacccgca      2880
     acgttccaaa gagtcatgga caacatactc aggaagcatt tgggtgtacg ttgtctggta      2940
     tacatggacg acattattat tttttcaaca agtttgcaag aacatttgca aaacttgaag      3000
     atgatattgg atactcttag agagtacaat atgaaaattc aaattgacaa gtgcgaattc      3060
     ttacaaaaag aagtcgcctt tctgggtcat atcgtaactc ccgaaggagt taagccaaac      3120
     ccagaaaaaa ttaaagttat tcaagaatgg ccactgccga ataacgaaaa ggaactgaaa      3180
     gggttcctgg gcatgattgg ctattataga aaatttataa gagatttcgc aaaaatcgcg      3240
     aaacctctaa cacaacaact tcggaaagga gaaactattc aacatactcc cgcttttgtc      3300
     tctgctttta aacgttgcag aaatttatta actagtagcc atgtgctaca atatccagat      3360
     tttacgaaac catttgtgtt aacaacagat gcttcgaact atgccttagg cgcggttctg      3420
     tcccaaggac ccatcgggaa ggacaaacca atagcctttg catcacgtac cttaacccga      3480
     gctgaagaga actactcggc tatcgagaaa gaacttttgg ccatagattg ggtgtgcaaa      3540
     tattttaggc cttatttgtt cggtcgtaaa ttcactcttt acaccgatca taagcctctt      3600
     acctatgcct tagatttgaa aacctcaaat gataggctca tcaaaatgaa actacgtctt      3660
     gaacaattca actacgacat taaatatcgc cccggcaaac aaaatgttgt tgccgacagc      3720
     ctatcccgga ttaaacccac aataaatgta aacgaacaag aaacgttacc atcttcatcc      3780
     agtgatgaca gcgaacctga cgagaataat gacaatgatg acaatgaaag caatgatgac      3840
     agcgatagtg gaactgttca ctctagttca tcagacgcaa gcaacctgat taaaatgacg      3900
     gaaaaaccta ttaacgtttt taaaaaccag attctcatta cagaagggcc aaagaacgac      3960
     gaatcatatg aagagatctt cccctctata tttcggcgga ccatcaccag aacaacgttc      4020
     ggtatggtga atgccgtgga catcttccga gattacatgc atccgacccg aaccaattgt      4080
     atcctatgcc cggaaagatg gctaaaatgg gtacaattag cgtatcggaa ccacttttcc      4140
     cgaaacaaaa ccttcaagat cgtactaaca cagtctattt tgcaggatat tccttccgac      4200
     gaagaacagg accaaatcat tgaagagacg cacaaccgtg cccaccgagg aatcgaggac      4260
     aattgcagag tcatctctaa gaagttcttc ttcccgaaga tgcggaacaa ggtaacaagt      4320
     tttgttaatc tttgtaccac atgtctcgaa aacaaatacg agagaaatcc ttataaaatc      4380
     aaatttgcat acacccctat ccccaagaag cctctcgaca ttctccatgt ggatattttc      4440
     atatccaatc ccaacatttt tctttccgca gtggataaac tatcgcgata tgcgatgctt      4500
     atccctgtca aatcaaggtc cattccggac ataaaaaggg gactcactaa acttttcacc      4560
     acctttggaa caccaaagat gattgtgtgc gacaatgaag ttgcacttaa agccatagaa      4620
     atacgtggtc tccttcagag actagacgtg gaaacctata acacaccctc agatcatagc      4680
     gaagtgaatg ggatcgttga acgatttcat tctactttaa gcgagatctt caggtgcatt      4740
     agaaacaagt ttccagatct ctctaacaaa gagatttata aaatcgcaac taatttgtac      4800
     aacacaacca tccattcggt aactaaattg aaacccttag aagtattctt tggagttaaa      4860
     gacggcgaag aaaggccact taacctccag aggatactcg agaatagaaa cgagatcttt      4920
     gacgaggtcg tccaagaact cgaggccaga cagaaaaagc aaattgatgc acgaaacaag      4980
     ttcagagaag aagatcctaa cttcgaagaa catgacaaaa tttacgtaaa aactaccggt      5040
     atccctaaca aaaagaaagc aaaattcaga aaacaaatag tcaaaaacaa taggaggaaa      5100
     acaattatcg atcaaagaaa cattaggctc cataaatcaa atttgaaaag gaaaagaaaa      5160
     ctctaaatcc atgctaactt taaattttga taaccgaaaa gggactttcg gatctaaagg      5220
     ggggatactg tttccgattc attttagtta taataacaaa ttctaacaaa ctaacacact      5280
     aacccttaaa ttacagatgc cctgccttct cgttttgctt tgtataacac tcgaattatt      5340
     atcatgcgaa ccacttttaa aaattataaa aacaacgaac gatcccatag ctcagataaa      5400
     aattacagat tgcaaaattc aaacgggatc cataaaaatt atacacccga tcaatttagc      5460
     attgaggagg ctatagagca aatcactaac actttttata ataaactaac acctaaaaat      5520
     gaattacacg aagtgataaa gtttagggtc aaacgactgt actcgactct atatggactg      5580
     aagccacagc aaactcatcg gcaccgacga tgggactcca taggcacggc gtggaaatgg      5640
     attgctggat cacccgacgc ccaggacatg tacatcataa actccactat gaatgagatc      5700
     atcgaccaga acaactacca atacaggata aacgagagca ttaataaacg gattgcacag      5760
     ctaacaggaa caatcaacca gatggccaat gtgatcaaca ataacaaggc gaatctggag      5820
     gttttggacg ccatcacaat catgctgaac gtagacgtca tcaacgaact tttggataac      5880
     attcaagaag cagtcaccct ttccaaaatt tccgtcacca acaacaaaat gttatcaacc      5940
     tgcgaagtga acgtcatcaa atccaccctc catgaacaag gtatagaagt caactttccg      6000
     gacgaagcac tacaattcgt cacccccaaa attgcagtga agcaaggaga cctgctctac      6060
     atactacatg tcccccacct ggaaaactca acatcaaccg tcatcagaat ttttccactc      6120
     attgtggaca accagatcat caaatcatac ccgagccaca tcatacggca cggtcatagg      6180
     cttttcacaa cagctaatcc cagagatttt gtacaaagat catccaacat cgaagaattc      6240
     gaagacgaat gtattcagaa cattatactg ggaaaacggt ctaaatgcaa ttctatcttc      6300
     aaggacgaaa caacgcaaca gcttgctaac gagaacacag tcattatctc gaatgcaaaa      6360
     aatcacacac taagtacaaa ttgtggacca gaggatagaa acataaccgg gaatttcatc      6420
     gttatatttc gaaactgtac agttcacttc aacaaccagt ctttcaccag cacagaaatg      6480
     accgttgata cggaggtaat acatggagca tttcacaaca gctttatcga atggaattta      6540
     cacaaacaac atgatatcgc aacaatcagc aaaacagcag ttagtaaccg acaacaacta      6600
     aatcacgttt acctgaggca agacagttta catttcaaac tgtggacaac attcggtgga      6660
     ttttcattct ccaccatact tggatttgtc atcgttggcg tactcatcaa aatcatctac      6720
     aaaaacagaa ccaacggaac gggacgttcc tctcttaggg gcggactagt tacggaagta      6780
     acggagcagc acgaggtcac acc                                              6803
//
ID   Gypsy-155_AA-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   AAGE02017419;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-155_AA_;
KW   Gypsy-155_AA-I; Gypsy-155_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-128
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017419; Positions   60796   60669.
XX
SQ   Sequence 128 BP; 49 A; 35 C; 28 G; 16 T; 0 other;
     tggcaaccac aacgaagagg aacgcattct ccaacaacag gtagcgaaac tgcaacacca        60
     gcagtctgaa ctgcagcgca taattcaaca attggaagaa caacagtcga cgacggcgta       120
     acacgaca                                                                128
//
ID   Gypsy-156_AA-I repbase;    DNA;    INV; 5873 BP.
XX
AC   AAGE02024556;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-156_AA_;
KW   Gypsy-156_AA-LTR; Gypsy-156_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5873
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024556; Positions   19063   13191.
XX
CC   Positions [4348-4824] - Integrase core
CC   'CCTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..2044
FT                 /product="Gypsy-156_AA-I_3p"
FT                 /translation="MDVEFDLLYKNLLLHHLEREEIEYELTIRGLPYTDTE
FT                 TRAALMRRLKDKLKTDPNANIDITQCDFEIGSEFKQIDSKIKEIRDCLAHR
FT                 NKFEGIRESLKTRLAHYFKRTKRLTELTDKDEDLSDIDGLIACIRGTFNDN
FT                 FSIFAPLGQRDVIETLNQSISNLLITNENSSATVQQNKTSTPYEEDVEVLE
FT                 GASSSRTRRLKSGIDHSGEKLLPESESNIMPLLLQQWMMRDTQIQNWVQQM
FT                 VREQASEYFENAIRTNSRSVPKEKPSVNTVRKTTSHRSNNRSRRSSSESRK
FT                 SSSTEAGWSSDEPRNSSRGSKRVQKSGKRRPVSDWKLKYDGSDNGLALMKF
FT                 LREVEFYAKSEKMSSKELFQSAIHLFNGAAKTWFMTGFDNEDFTSWEELKE
FT                 ELKKEFLSPDHDHSTEIRAIARKQAPRESFHDYFLELQKIFNSLTKPMTER
FT                 RKFEIVFRNMRADYKGHAVSSEIDNLADLKKFGRRLDATYWFKYQNPSNES
FT                 SNPRGKPSQVNDLNADARNKSKSKAGFTKQKSRTFHNSSTQPRGSDNEEKP
FT                 SQKPPESGAKPKEQNPPIPSQYNQPAPKYCLNCRTKGHHTRDCDQPKQKSC
FT                 QKCGFYNVDTASCPNCAKNELKTVAEGRQFNQN"
FT   CDS           2263..3261
FT                 /product="Gypsy-156_AA-I_1p"
FT                 /translation="MGAMKLIRKCGLKIFPSEVSLRTASGEKLGVTGMVYL
FT                 PITFNGKTKIVDTLIAPSLKRKILLGMNFWRAFEIRPTVDEVQVEETVVDE
FT                 DSEASFPDSKEPEIELTEEQTARLNIVKNQFKIASEGILDTTDWISHRIEL
FT                 TEEAKKLSPARVNPFPVSPKKQEQINNELDKMLECKIIEKSYSDWALRLVP
FT                 VDKSDGTVRLCLDARKLNERTVRDSYPLPHADRILSRLGHANYISTIDLSK
FT                 AFLQGPLHPRSRKYTAFSVLGRGLFQFTRMPFGLVNSPATLSRLMDRVLGG
FT                 GELEPNVFVYLEDIIVISETFEEHLTLLLKWHPDLELPIYL"
FT   CDS           3418..5205
FT                 /product="Gypsy-156_AA-I_2p"
FT                 /translation="MCNYYRRFLANYSRYTQPLTDLLRNKPKTVCWNDEAE
FT                 ESFRRIKELLISSPILTNPNFNLPFAIHCDASDAAIAGVLTQTHDGIEKPI
FT                 TLFSQKLTTTQQRYCATEKEGLAVLNSIEKFRCYVEGSKFTVYTDASALTY
FT                 IMRSSWRTSSRLCRWSIELQKYEMTILHRRGVDNIIADALSRSVEELEACE
FT                 EDNGWYADLKRKVQSDPEKYKDFRIDHGVLKKLVSTQDDLLDYRFSWKTCV
FT                 PKSLRETKLVEEHDDKMHLGVEKTLALIKKKYFWPKMLEDVREYVRKCTIC
FT                 RQNKPANRSQMPEPGQQRLTNRPFQIVALDFIQSLPRSKNGNTHLLVIMDI
FT                 FSKWCLLTPVKKISAPLVTKILEESWFRRYSVPEFIITDNASTFLSSEFKA
FT                 LLAKYQVQHWRNARYHSQANPVERLNRTINACIRSYVKDNQKVWDTKVSEI
FT                 EHCLNNTPHSSTGFSPYRVLFGHEIVGTGEEHRMDREKEEVSEDGRLERKG
FT                 KIDEQVYSTVKKNLQKCHEKNIKTYNLRSKQSAPVYVVGQRVFRRNFRQSS
FT                 AADSYNAKLDALYVPCTILARVGTSSYELADDKGKPIGVFSVCDLKPEA"
XX
SQ   Sequence 5873 BP; 1803 A; 1334 C; 1311 G; 1425 T; 0 other;
     atttggcgcc caactaaaat ttaaaattct aacattacca cccccctttg gtaagggcag        60
     taaaacagtg tcctgtttta gttttctttt tcgtcctcca aacgaagaat cattagtggt       120
     tgagaactgt taaattgatc gaaatttcac gatggatgtt gaattcgacc tactctacaa       180
     gaatttatta ctacatcatc tcgaacggga agagatagag tatgaactta ctattcgtgg       240
     tcttccttat acggatacag aaacgcgcgc ggctttaatg agacggttga aggataaact       300
     caagaccgat ccgaacgcga atatagatat tactcagtgc gattttgaaa tcggttctga       360
     attcaaacag attgactcga agattaaaga aattcgggac tgtctagcac ataggaacaa       420
     attcgaagga atccgagaga gccttaaaac acgattggct cattatttca aacgtaccaa       480
     acggttaaca gaattaactg ataaagatga agatctttcg gacatcgacg gtttgattgc       540
     gtgcattcgc ggaacattta acgataattt ttcaatcttt gcgccactcg ggcaacgaga       600
     tgttatagag acactgaacc agtctatttc gaatctcctt attacgaatg aaaactcgtc       660
     ggctacggta caacaaaata agacgtctac cccatacgag gaagatgttg aagtgcttga       720
     gggagcatca agctcgcgta cgcgtaggct caaatccggt attgatcatt cgggagaaaa       780
     gctattacct gagtcagagt cgaacatcat gccattgctt ttgcagcaat ggatgatgcg       840
     agacacacaa attcaaaatt gggtccagca gatggtgaga gaacaagctt cggagtattt       900
     cgaaaacgcg atccggacaa actctcgctc cgtccccaaa gagaagccgt cggtgaatac       960
     agttcgtaaa acaacctcac accggtcaaa taatcgttca cgccggtcaa gctcggaatc      1020
     tagaaagtcc tccagtaccg aagctggttg gtcttccgat gaaccacgga attcgtcgcg      1080
     cggaagcaaa cgtgtccaaa aatcgggaaa acgtcggcca gtctcagact ggaaacttaa      1140
     atacgacggg tctgataacg gactcgccct aatgaaattc cttcgtgaag tagaatttta      1200
     cgctaagtcc gaaaagatgt cgagcaaaga attatttcaa tccgcgattc acctgtttaa      1260
     cggcgccgcg aaaacatggt ttatgacggg ctttgacaac gaggatttca cctcgtggga      1320
     agagctgaaa gaggagctca agaaggaatt cttgagccct gaccacgatc attccaccga      1380
     aattcgtgcg atcgcgagaa agcaggcacc acgcgagtcg ttccatgatt attttctaga      1440
     gttacagaaa atatttaact cgttaactaa acctatgacc gaacgtcgga aatttgaaat      1500
     agtgttccgt aacatgcgcg cggattataa aggacatgcg gtgtcctcgg aaatcgataa      1560
     cttagccgat ctcaagaagt tcggtaggcg tttggatgcg acatactggt tcaaatacca      1620
     aaatccatcc aacgagtcgt ccaatccacg cggtaagcca tctcaagtga atgatctcaa      1680
     tgcggacgcg agaaacaaat cgaaatccaa agcagggttt acaaagcaaa aatcgcgaac      1740
     tttccataat tcgtcaactc aacctcgcgg ctcagataat gaagaaaaac cgtcgcaaaa      1800
     accgcccgaa agcggtgcga aaccgaagga gcaaaatcca ccaatcccct ctcagtacaa      1860
     tcaaccagcc cctaaatact gtttgaattg tcgcacaaag ggtcatcaca ctcgtgactg      1920
     tgatcagccc aaacaaaaaa gttgtcaaaa gtgtggtttc tataatgtag acacagcttc      1980
     ttgtccaaac tgtgcaaaaa acgaattgaa gactgtcgcg gagggccgac agttcaatca      2040
     gaactgaagt cccttgctaa ttacgacaat gtaacttatg ctctccagaa ccaagggttc      2100
     gacagatttt cccccacaga ttatgtccac actcacaatt atcagattaa tgagacgatc      2160
     attaaagtag aaaatgacga tagaccattt gttaagctgt ccgtcttcca aattcccctg      2220
     gtaggcttgt tagacagtgg tgcccatctc accattctgg ggatgggagc tatgaaatta      2280
     atacgcaaat gtggccttaa aatctttcca tccgaggtga gtcttcggac tgccagcggg      2340
     gaaaaattgg gagtcactgg tatggtctat cttcctatta cctttaatgg aaaaaccaag      2400
     atagtagaca cgctgatagc accttcactc aaaaggaaaa tccttttagg aatgaacttt      2460
     tggcgtgcgt ttgaaattcg ccctaccgta gacgaagtgc aggttgaaga aacggttgtc      2520
     gatgaagact cggaggcaag ttttccggac tccaaggaac ccgaaataga attaaccgaa      2580
     gaacaaactg ctcggttgaa cattgtaaaa aatcaattta aaattgcatc ggagggtata      2640
     ctggatacca ccgattggat aagccacaga atagaactca cagaggaagc caaaaagctt      2700
     tcccctgcta gagtaaatcc gtttccagtt tctccaaaga aacaggaaca gatcaacaac      2760
     gaattggaca aaatgctcga atgcaaaata attgagaaat cttacagcga ctgggcttta      2820
     cgtctggttc ctgtagacaa atcagatgga acagtgcgcc tttgcctgga tgcacgcaag      2880
     ctgaatgaac gtacggtcag ggactcttat cccctcccac acgccgaccg tatcttgagc      2940
     agactaggac atgctaacta catatctact atagaccttt caaaggcttt tttacaaggt      3000
     cctctgcatc ctaggtctcg caagtatacg gcattttccg tgttgggaag gggactgttc      3060
     cagttcacgc gtatgccttt cggtttggtg aacagtcctg cgacactatc acgactgatg      3120
     gatcgagtgt tgggcggtgg tgagctggaa ccaaacgttt tcgtctacct ggaggacatc      3180
     atcgtcatta gcgaaacgtt tgaagagcac ctgaccctac ttctgaagtg gcatccagac      3240
     ttagagctgc caatctatct ataaatctag aaaagtccca tttttgcgtc actgaagtta      3300
     cttacttagg ctacattctg gatcgtgatg gtctgaggcc gaatccagat cgtgtggccg      3360
     cggggtgtaa actatgagcg acctacgtct ttgcgggctc taaggaggtt tcttgggatg      3420
     tgtaactatt atagacggtt tctagccaac tatagcaggt acacacagcc cctaactgac      3480
     ttacttagaa acaagcctaa gacagtttgt tggaacgacg aagccgaaga gtcattccga      3540
     aggataaaag aacttcttat cagttcccca atcctaacca atcccaactt caatctaccc      3600
     tttgcgatac attgcgacgc gagtgatgcg gccatcgccg gtgtgcttac gcagacgcac      3660
     gacgggatcg agaagcctat tacgctcttc tcgcaaaagc tgaccactac ccaacaaagg      3720
     tattgcgcga ccgaaaagga gggccttgcg gtcctcaatt cgatcgagaa gttccgatgc      3780
     tatgtggaag gtagcaaatt taccgtgtac acagatgcat ccgctctgac gtacataatg      3840
     cgcagtagct ggcgaacgtc gtcgcgtcta tgtcgctgga gcatagagct acagaaatat      3900
     gaaatgacta tcctgcaccg ccgaggtgtc gacaacatca tagccgatgc cttgtccagg      3960
     tccgtcgagg aactggaggc ctgcgaagag gataacggct ggtatgcgga tcttaaaagg      4020
     aaagtacaat ccgatccaga gaaatacaaa gattttagaa tagatcatgg agtcctcaag      4080
     aagcttgttt caacacaaga cgaccttttg gattaccgtt tctcttggaa aacctgtgtt      4140
     ccaaaatccc tccgagaaac aaaactcgtt gaagaacatg atgataaaat gcatcttgga      4200
     gtcgaaaaga ctctggcgtt aataaagaaa aaatacttct ggccgaagat gcttgaagac      4260
     gtgcgagagt acgtcagaaa gtgtactatt tgccggcaaa ataaaccagc aaatcggtct      4320
     caaatgcccg aacctggtca acaacggttg actaataggc cttttcaaat tgtggccttg      4380
     gactttattc agtccctccc ccgcagtaaa aacggtaata ctcacctact ggtaataatg      4440
     gacattttct cgaaatggtg cttacttacc ccggtgaaga aaatctccgc tccactggta      4500
     accaagattc tcgaagaatc ttggttcaga aggtattcag ttccagagtt cattataacc      4560
     gataacgctt cgactttcct aagctcagag ttcaaagctc tgctagccaa ataccaggtc      4620
     cagcattgga gaaatgcccg ataccatagc caggcaaatc ccgttgagcg tctaaatcgc      4680
     acgatcaatg cttgcatcag atcgtacgtt aaagacaacc agaaagtttg ggacacgaaa      4740
     gtgtccgaaa tagaacattg ccttaacaat actccccact cctctaccgg gttttcaccc      4800
     taccgagtac ttttcggaca cgaaatagtt gggacaggtg aggaacacag gatggatagg      4860
     gaaaaggaag aggtatccga ggacgggagg ttggaaagga agggaaaaat cgatgagcaa      4920
     gtttattcca ctgtcaagaa aaacctacaa aaatgccatg aaaagaacat aaaaacttat      4980
     aatctacgct ccaaacaatc tgctccggtc tacgtggtgg gccagagagt ctttcggcgg      5040
     aacttccgac agtcatccgc agcggactcg tataacgcca aactggatgc cctatacgtt      5100
     ccgtgtacca tcctggctcg agtgggaacg agctcgtacg agctagcaga cgataaggga      5160
     aagcctattg gcgtattctc agtctgtgat ctgaagcccg aagcctaaaa gtaatcacca      5220
     ttcattaaaa tcttcaagtg ggtcgtttta tttgagaaac actcaccttc cattcatacg      5280
     tccggacgta aaaacaaaga aattttcctc ggtttgatcc ccgagaccta aaaagattga      5340
     aaacaaaatg gtttagcact ctgtcgtgat tgtggtcgac tgaaaactac tcgtatcatc      5400
     tcttacctgg ccaagatcca aatttcctcc tccaacagca tattctcacc tccagctgat      5460
     ccctcaaaag tccaatggga attcgaccgg taaaagcttc tccgatcgct ggacacgcgc      5520
     gcagtcagaa tttgctgctg gaagacccga atttagtcga acacgccgga aaactcgcgg      5580
     aaaccgtgaa aacgcgtcgg aaaagacaac tcgcatgcac cgtcgttcga tcgcgcagta      5640
     gtaaataaaa gttgacgatt tgacagttct caacacagta gtgttggtaa aattgagtta      5700
     ccttttcttc atcgtgagtg cgatgaaggt gaatggaaat tcagagtggg ccctaggggt      5760
     tcatatattt aacataaatc ggtaatcgat taatgttgta attaatatgt aaaaaccctt      5820
     gttttgattt gaaatgtaat aaacagcatt tcagaagagg gacgatgggg caa             5873
//
ID   Gypsy-156_AA-LTR repbase;    DNA;    INV; 1765 BP.
XX
AC   AAGE02024556;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-156_AA_;
KW   Gypsy-156_AA-I; Gypsy-156_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1765
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024556; Positions   13190   11426.
XX
SQ   Sequence 1765 BP; 466 A; 435 C; 378 G; 486 T; 0 other;
     tgtaaccgtt ggttccaatt gctacttgca gcttccccgc aagacatttt tccttcccat        60
     taaccccact gtgcttgtca ctcactttat gcagtcaagt ggtacccacc tgtcggcata       120
     aagggtgagt accagttaga tcccaacacc aatacgcttc agagaagtaa cccatttgca       180
     gcggtttgag cgcgaggaaa aaataaaagc tcgccgtacg ttcatcattt gcccacagat       240
     ggagtaggat ggaagggttg ccaaattgga agagcattat aggtacttcg gcaattttcg       300
     tgctcggtcg taccaattag ataattaaat acctcagctt tcatctcgga gagattattc       360
     tgtccgaaac actagtcgga attgcagtgc acgccggaaa ataattatta aattcgatag       420
     tgagttgttt ttcaatttta gtggtgtaga tttctaatct tagttaaatc ttttcagaat       480
     agcatgcata gttaagctca aaaccgcatg cagagttagt ataatagatt tcagtgcaaa       540
     taatcattat aaaaggttag tggtgttcaa agaagaaaag caattgtgtg aatagacaaa       600
     aaaaaaccta ttgttcctat tgtaattata gttatccgtt gtgactattg taacgtcgcg       660
     tccaaaaaga aggtcaagtg ttagattgac aagaaaaagg taattttaag actacatgaa       720
     acatattgta cttgcaacgt gaaaattaag tgacgtcaca cgttagtaac catggggtag       780
     gtccatctcg tgggcctttt tcttttttct accctctctt ggcggagcaa gggccgttct       840
     tctactcaat aggatcgagc atcggcgatt tcctcggaca agcgcaccag aaaactcctc       900
     gacacgccag tgtgggacag aattgggaaa ttcgtcgaag cgtggccctg tcgacctatt       960
     gttccattgt tcggccggta ttcctggtca aaccatcacc atcgaccata ttgccacgcc      1020
     acgcccggtc caaccacctc gtcattgctc ctcgccaaat ccgccacgtt gactgctggc      1080
     cctatcagtc ggccgacctt atcatcacca ttgtccagtt gccccatcac gggagtataa      1140
     tccgccgaag ggatttaggt gggccctggg cccctcctat acctacgacc gacaaggact      1200
     cgtttcgtcg gtgactgacc agccaagcca tcaaccatca gcgcaagcct cgcctctcct      1260
     ctcagcaaca gaattcgcct gtcatcatca tcaaccccca gctgctacca ccatggatcg      1320
     agaacaagaa tgaaccgcaa gtaccccatt gatacgttgt gacgtcactc aaaaatgcca      1380
     taattggcga ataaacaggc atgtaaattg aattgctttg taggtagcac actttattta      1440
     agattcggct atccattcgt cttctccacc actcttaact ttgcttcgtt tgttcggact      1500
     cataaaggag tcgccaggcc tcgcctactg tgtatcgaat gtgaattctt ctcttcgagt      1560
     agcttttgag cccctcctag gtacggcact gtttgtcagt ttttccactt tgcaacatcg      1620
     gtgggcacgt gtcgcgcaac acacgtgcat gtgtgtagct cccgccgtag gtgagtacct      1680
     tctgtgggtg tatagtgttg agatctaagg taaacgaccc tgtaattgtc acccttccct      1740
     agtctcaggg agctagcagg taaca                                            1765
//
ID   Gypsy-157_AA-I repbase;    DNA;    INV; 5300 BP.
XX
AC   AAGE02018588;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-157_AA_;
KW   Gypsy-157_AA-LTR; Gypsy-157_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5300
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018588; Positions   47766   42467.
XX
CC   Positions [2321-2821] - Reverse transcriptase
CC   Positions [3956-4426] - Integrase core
CC   'GTAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           735..1841
FT                 /product="Gypsy-157_AA-I_2p"
FT                 /translation="MSSLIGTVDHFVRGSSFAQYMERMDILYQLNNVADNM
FT                 KKSLFITMSGPVVFEEVKLIYPGKNVKDIDYADMIDKLKNRFDKIEPNMMH
FT                 RHRLHMRKQGIDEPAENYVLGIKLIAAQCGFGAHKDEAVKDAIIFGLRDQE
FT                 LKQKLLMKDDISLDEVEQIVIRTELAKLRVKALSGEEDGARCINSVKYRLG
FT                 HNHSEHNWNSSRNSRQESRRFVSRSHSLDSNRSRSPRHEYQIDRSHYGNRN
FT                 RFDNRNYRPSYQQQQRRRSENEDMHANIICNFCKKRGHVKRNCFKLKNRRA
FT                 VNFVQENDVHSVQERDLEKDESYDFKRLSIRDSEDSEDFACMMIKSGISDG
FT                 GPCMVEVVVEGRKFNMEVDCGAAVSV"
FT   CDS           2021..4930
FT                 /product="Gypsy-157_AA-I_1p"
FT                 /translation="MPLLDRNWLEVFFPQWRNAFVSAKAINSLQSENTNLN
FT                 STGKFEMDIKAKFPKSFDGDFSKPIIGHEADLVLKDTSPIFKKAYEVPFKL
FT                 REKVLEHLDSLERQNVITPIQISEWASPVIIVLKKDDDIRMVIDCKVSINK
FT                 VIIPNTYPLPLVQDIFASLAGCKWFCCLDLAGAYTQLQLSKRARKFMVINT
FT                 IKGLYTYNRLPQGASSSASLFQKIMDQILAGLKYVQVNLNDVLIAGRTKEE
FT                 CYKKLMLVMEKLQAANIKINLKKCRFFVNSLPYLGHLITEKGLLPSPEKLL
FT                 TIEEAKVPKDVAELKASLGLINYYGKFVPRLSAKLRPLYQLLKKDSKFVWN
FT                 ETSQLSFEECKKALLTAGILEFYDPSKPVVVISDACTYGLGGVIAHIVDGQ
FT                 EKPISFTSFSLNSAQQKYPILHLEALALVCTVKKFHKFLFGQKFSIFTDHK
FT                 PLLGIFGKEGKNQLCVTRLQRYVMDMAIYDYEIQYRPSAQMGNADFCSRFP
FT                 LEVEVPRCVDSGSVKSINFFNDFPIDYSLIAKETRVDDFLSKIVLYVTNGW
FT                 PQRIENEWKKAYSLRFDLEVVEGSLLYQDRVFVPFKLHEPILKLLHSNHIG
FT                 MVKMKQMARRCLFWLGINEDIEWHVKQCQACLQMSVIPKSTNSTSLTQTNR
FT                 PFSRIHADFFHFDHRTFLLVVDSYSKWLEIDFMKTGTDATKVIRKFVAIFA
FT                 RFGLPDVLVTDGGPPFNAFQFTSFMERQGIKVLKSPPYNPSSNGQAERMVR
FT                 VAKDIFKKFLLDPFTKTLDIEDRILYFLFNYRNTCSGEDERFPTEKVFCFK
FT                 PKTLTDLLHPKRTYKDHLIIPDTKEKLDDEVDNSCSTPSQDPFLKLKLGDQ
FT                 ILYKNYDKTALEKWIAAQFVTRVSTNVFRISIGRNTLNAHRSQLKIMEKRP
FT                 TGSQMRVTMQRVKRPRTASDSEEEFLGFPDVPMVPGQIDDDRRRFKQLKRS
FT                 PIVTRSKSRSKPNLN"
XX
SQ   Sequence 5300 BP; 1740 A; 839 C; 1155 G; 1566 T; 0 other;
     gttgcgacga gaaaaaaaaa ttagtggatt acctacttgg aaaactgtga tttgttagca        60
     atctcagtat agagtggtaa gataaaaaaa atcatagcgg caatagaagg agcaattgac       120
     cgtgtgtgag caatagaact gaagcttgtg tcccatgaaa aattaatcac tgttaattat       180
     tgggtgcagt gattaattgt ttcaagaggt gttggaatca gttcatttca tcgtagctgt       240
     tgaattgtgt aaaaatagaa ctttcaaaag aaaatttgtg aaatttacgg tgcacgtgtt       300
     cggtacagta caatagattt aaatctacga gacaccattg tgaggccgaa acaataagct       360
     tcaatatata ggccagcaat agctttgtgc tcttttgtta atttatgcag tgtgattctg       420
     gagaaaagtt tgtatcggat agtgatcgtt gatttcatgt gtccgtgagc aaatagttaa       480
     ttctgcatag acatctaagc aacagtgtgc accagtgact agaaagtgta tattggattc       540
     aacttgattg gaggcgacca gcaccggcta ttggattacc acgtgaaatc agcatcagca       600
     gcatcagcgg tgtgaaaacc agacagaagg ttctaccaga ccagcgtcgt aagaaaaggt       660
     cacgtaagtc gttatttctt attactcata ttctattctt ttagtgtcta ttgtttgtga       720
     atacttacgc cattatgtct tccttgattg gcacggtcga ccattttgtt agagggtcca       780
     gtttcgcaca atatatggaa cgtatggaca tactctatca attgaataat gtggcagaca       840
     atatgaagaa aagtcttttt ataacaatga gtggcccagt ggtttttgag gaagtaaaat       900
     tgatttatcc agggaaaaat gtaaaagata ttgactacgc cgatatgatt gataaactta       960
     aaaatcggtt tgataaaatt gagcctaata tgatgcacag acataggctg cacatgagaa      1020
     aacagggtat tgacgaacca gcagaaaatt atgtgctagg aattaaactt attgcggctc      1080
     aatgtgggtt tggcgcgcat aaagatgaag cagttaagga tgcaataata tttggtttga      1140
     gagatcagga attaaaacaa aaattgctca tgaaggatga tataagttta gacgaagtgg      1200
     aacagatcgt cattagaaca gagttggcga aattgcgggt taaagctcta agtggagaag      1260
     aagatggtgc taggtgtata aattccgtga aataccgttt gggtcataat catagtgagc      1320
     acaattggaa ctcgagcaga aatagtaggc aggagtcacg taggtttgta agccgcagtc      1380
     atagtctgga tagtaatcga agccgttcac caagacatga atatcaaata gatagaagcc      1440
     attacggaaa ccgaaatcgt tttgataata gaaattatcg tccatcatac caacagcaac      1500
     aacgtcgtag atctgaaaat gaagacatgc atgctaacat catttgtaac ttttgtaaga      1560
     aacgcggtca cgttaagcgt aactgtttta aactaaaaaa ccgtcgggct gttaattttg      1620
     ttcaggaaaa tgatgtccat tctgttcagg agagggattt ggagaaagat gagagctatg      1680
     atttcaagcg tttgagcatt cgtgattcgg aggattcaga ggattttgca tgtatgatga      1740
     ttaaatcagg gattagcgat ggtggaccgt gtatggtaga agtggttgta gagggcagaa      1800
     aattcaacat ggaggttgat tgcggggcag cagtgtccgt ataagtttga tcacatacaa      1860
     aaggtatttt gaaaacgtta aagtggccga ttgtgctagt cgattagtcg tggtgaatgg      1920
     ccagcggttg aacattcatg gaaaaattca agttagagtc agtgttaaca acaacgaaaa      1980
     acatgtcagc ttgatcattc tggattgtgc aaacaacttt atgccactct tagatagaaa      2040
     ttggttggaa gtgtttttcc cgcaatggag aaatgctttt gtaagcgcta aggctatcaa      2100
     ctctcttcaa tcagaaaaca ccaacttgaa tagtacgggt aaatttgaaa tggatattaa      2160
     ggccaaattt ccgaaaagtt ttgatggtga tttttccaaa ccaattatag gacacgaagc      2220
     agatttagtt ctgaaggata catcaccaat ctttaagaaa gcatacgaag tcccattcaa      2280
     actcagagag aaggtgttgg aacacttgga ctctcttgaa agacagaatg tgatcacccc      2340
     catccagatt agcgagtggg cgtccccggt aattatcgtt ttgaaaaagg acgatgatat      2400
     acgcatggtc atcgattgta aggtatctat taataaagtc attataccta acacgtatcc      2460
     tcttcctttg gtacaggata tatttgcttc tttagctggg tgtaaatggt tttgttgcct      2520
     agatttggcg ggggcgtaca cgcaattgca actttcgaag agggccagga aattcatggt      2580
     gataaacact ataaaaggtt tatacaccta caatcgttta cctcagggcg catcctcaag      2640
     tgcttccctt tttcaaaaaa ttatggacca gattctagca ggattaaaat acgtacaagt      2700
     taacttgaac gacgttctta tagcaggaag aacaaaagaa gaatgttaca aaaaattgat      2760
     gttagtgatg gagaaacttc aagctgcaaa cattaaaata aatttaaaaa agtgtaggtt      2820
     cttcgtgaat tctcttcctt atttaggcca ccttattacc gaaaagggtt tactaccttc      2880
     acctgagaag ttgttgacca ttgaagaagc gaaagttcct aaagatgtag cggaattgaa      2940
     agcttccctt gggttaatta attattatgg taaatttgtt ccaagattat cagccaaact      3000
     tagaccgcta tatcaattgt taaaaaaaga ttctaaattt gtttggaatg aaacaagtca      3060
     gctatccttt gaagaatgta aaaaagcatt gctgacagcg ggtattttgg aattttatga      3120
     tccaagtaaa ccagtagttg tgatttcgga tgcatgtacc tacggattag ggggagtaat      3180
     tgcacacata gtagatggcc aagaaaaacc tataagcttc acatcctttt ctctgaatag      3240
     cgcacaacaa aaatacccta ttttgcatct agaagcatta gctttggtgt gcacagtgaa      3300
     aaagtttcac aaattcttgt tcggacaaaa gttttcaata ttcaccgatc acaaaccgtt      3360
     gctgggtatc tttggaaaag aaggaaaaaa tcaactttgt gttactagac tgcagagata      3420
     tgtaatggat atggcaattt atgattacga aatacaatac cgaccatctg cacaaatggg      3480
     taacgcggat ttctgctcta ggtttccttt ggaagttgaa gttccaaggt gtgtggatag      3540
     tggtagtgtg aaaagtataa atttcttcaa tgattttcct attgattact ctcttattgc      3600
     caaagaaacc agagtagatg attttctttc taaaattgta ctctatgtta ctaatggttg      3660
     gcctcaaaga attgagaatg aatggaagaa agcttattca ttaaggtttg atcttgaggt      3720
     ggtagaaggt agccttttat atcaagaccg agtatttgta ccgttcaaac tccatgaacc      3780
     tatactaaag ttattacatt caaatcacat aggaatggtt aaaatgaaac aaatggctag      3840
     acggtgttta ttttggctgg gaattaatga ggatatcgaa tggcatgtta aacaatgcca      3900
     ggcatgttta cagatgtcag tgatacctaa atcaactaat agtacatctt tgactcaaac      3960
     aaatcggcca ttcagtcgca tccatgccga tttctttcat ttcgatcaca gaactttttt      4020
     attggtagtg gatagctata gtaaatggct ggaaatagat ttcatgaaaa cgggaacgga      4080
     tgctaccaaa gtaattcgta aatttgtggc gatatttgct cgatttggac tgccagatgt      4140
     attggttacc gatggaggtc ctccgtttaa cgcttttcaa tttacgtctt tcatggaaag      4200
     acaaggcatt aaagttttaa aaagcccacc atataatcca agcagcaatg gtcaggcaga      4260
     gagaatggtg agagtagcta aggacatttt caaaaaattc ttgttagatc ctttcactaa      4320
     aacgcttgat attgaagacc gtattttgta ctttttattt aactaccgta atacttgttc      4380
     tggtgaagat gagaggttcc caactgaaaa ggttttttgt tttaaaccaa agactttgac      4440
     tgacctttta catccaaaaa ggacgtataa ggaccatttg ataattcctg acaccaaaga      4500
     aaaacttgac gacgaagttg ataattcatg cagtacgccc tcccaagatc cttttctcaa      4560
     gctgaaatta ggagatcaaa tactctataa aaattatgat aagacggcgc tagagaagtg      4620
     gattgctgct cagtttgtga ctagagtatc gactaatgtt tttcgaattt ctattggcag      4680
     aaacaccctg aacgcacacc gatcgcagct aaagataatg gaaaaaagac caactggttc      4740
     gcaaatgaga gtgactatgc agcgagtcaa gaggccgaga acggccagtg attctgagga      4800
     ggaattcctt ggttttccgg atgtgccaat ggtgccagga caaatagacg atgatcgaag      4860
     gcggttcaag cagctaaagc gtagtccgat cgtcacgaga agtaaatcac gctcaaagcc      4920
     gaatttgaat taattgtgtc cgaacaggtc gagcattaca ttgattgttc aaaggcaagt      4980
     tgtgcttgcg gtctgaattg aaataagcta cagaaattgt gttttttcga agttgtgttt      5040
     gagacctgaa ttaaaataag cagtcaaaat gaatttgtac tcgaaatagt tgtaaaacca      5100
     atattattta ttagagcatg ctaagtgtta aattttggta tcgatttaaa gttttgtcaa      5160
     aagcaatcat ggtttattga agcatgttca ctgatttgaa ttaggattag ctatttgatc      5220
     gaatattgta ttgaaagaca tatttgtaaa tagaatcaag tttgttttta gataaagttt      5280
     ttagctaaag ggaaaagaat                                                  5300
//
ID   Gypsy-157_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   AAGE02018588;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-157_AA_;
KW   Gypsy-157_AA-I; Gypsy-157_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018588; Positions   42466   42272.
XX
SQ   Sequence 195 BP; 55 A; 31 C; 41 G; 68 T; 0 other;
     tgttgtgtat atctaatggg tcgaacccgt tctcatagca ttatagcaga tcaagtgttc        60
     actgtggtag tacacgttct gtatgattat agcaaaggtg tcttgatgag taataaagat       120
     gaggtcggcc tcttttggtt taaaccttca agtgaatatc acgtatttta ataagtgctc       180
     ttgtacaaca tatca                                                        195
//
ID   Gypsy-158_AA-I repbase;    DNA;    INV; 5357 BP.
XX
AC   AAGE02017317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-158_AA_;
KW   Gypsy-158_AA-LTR; Gypsy-158_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5357
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017317; Positions   55457   50101.
XX
CC   'AGAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1223..2929
FT                 /product="Gypsy-158_AA-I_1p"
FT                 /translation="MALQSRIKPFDVSIETSRLPTEWETWKLDLESFFLAH
FT                 GIDKQSDKRAQLAYLGGPGLQELLRHLPGINQVPHVTIDPPYYDVAIKCLD
FT                 QYFEPFRRKTYERHLFHQIVQQPGERFTDFVMRMRKQIARCSYDPSVVDEL
FT                 IADRIAQGCASEELRTKLLQKDRTLDEVLTLGTSLAESHQQSKKLGRPITR
FT                 HEPEVYAVSNRPFRNDQQPMKRQFGFQPRYQPKYNQTNRFSCYGCGRRGHI
FT                 HGSSECPAKHTNCAACGKVGHWAKRCYSSGGVKRKMNRPVSYPKAKRIRAV
FT                 AEEIEKEQSKDYVFYAMGGNVFTFKVGGIQIPMTIDSGSDANIITKKVWEE
FT                 LKEAKVEAMEMTTQADRSLVGYASKQPMQIAGTFNAQIEAGENKTVAKFYV
FT                 VEDGQRCLLGDRTAKELNVLKVGFDINAVGTNKNKPFPKIRGVVVELPIDP
FT                 DVQPVQQAYRRPPIAWEAKIEAKLKTLLDLDIIEPVSGPSPWVSPVVPVMK
FT                 DSGEVRLCIDMRRANQAVLRESHPLPLVDELLGSVCGAVRFSKIDIKDAYH
FT                 QVEISERSRPITTFITKQGLFR"
FT   CDS           3066..5333
FT                 /product="Gypsy-158_AA-I_2p"
FT                 /translation="MFGVSCAPELFQKVMESVVAGLDGVIVYLDDAVVYGT
FT                 TVDEHDRRLAAVLERFAEYEILLNEKKCVYNTDTLEFLGHQLSVEGVKPTE
FT                 SRILAIQSFREPHNLSELRSFLGLVCYVGRFVPNLASLTDPLRQLLRSKDQ
FT                 FEWTLKHNSAFQRIKDEISQIHHLGFFNPKDQTKLMTDASPTGLGAVLMQV
FT                 DCKGRCRVIAYASKALTELERKYFQTEREALSLVWGVEKFRLYLLGIRFTL
FT                 VTDCKALKFLFNPRSRPCARIERWVLRLQGYTFKVEHVPGSENIADALSRL
FT                 SMPVNETFDEPTEGYIRNIVAESIPMAVTFEKVIEDSKNDASIQKAIEALQ
FT                 EGIRENMPKEFKPYVDELCSVDGVLLRGNRLVIPTQLQERIVTLAHEAHPG
FT                 MAAMKRRLRQKVWWPQMDKQVESFVKRCKECTIVSCLGAPEPLKRTRMPEK
FT                 PWKDIAVDFMGPLPSGHSLFVIVDYFSRFTEAVVMRTITARRTIEALHETF
FT                 SRFGVPESIRSDNGPQFISEEFKTYCEEYGITLLRTTPYWPQANGEVERAN
FT                 KTILKHLKISQEIGSDDWMWDLRSFLLMYNSTPHASTGVAPSTLMFGRILR
FT                 DKLPAFGDVSLRMDQEAIRDRDWERKLKDAEYSNERRQAKHSDLKEGDVVL
FT                 CKRMVKENKLSSTFAPEEYEVIRLEGSDASLRSINSGRKVHRNVAHLRRLT
FT                 SDKPDERKQTEEPPPTGMNENKSINDDNVAGESNTTRPKRLHRIPAYLNEY
FT                 ETDAV"
XX
SQ   Sequence 5357 BP; 1716 A; 952 C; 1315 G; 1374 T; 0 other;
     tatttggcga cgaagatggg ataaaacttg atttcaaaag tgcgaatttc aactaaatcg        60
     ggattcccga gatttttttg tgaatcgaac caagacgttt ttttggaaaa aattctgtgt       120
     cagtagacgc gagtgaacgc cattttgatt tgcggtgaag aacggttgga tgagcgacaa       180
     cgagttgggc ctgttgtgcc taagctgtga gcgtaagtga gataaaaaga gaaacgaata       240
     aaatgaaggg gaatgctgtg atgtgctttc ccagtttgtc tgtttaatga gaaaaaaatc       300
     gcatggcaga aaggaatgga gaatggatgt gaaaaaaata tgcatgtgtt tagtgttcta       360
     ggttgtggta ccagaaattt gtatacatta tcagtgcgag tacgaaacac gtaagaaaga       420
     gagagcaata taccttattg tactgtgaaa agagatgtgt tcttatgaaa aaatggggaa       480
     tttgcgatgt ttttcttcgt tgacctgaag atacaaagtg tttacgaaaa tggaagagag       540
     cggcggtggt tttgtaccat ggaaaggata tgttccaata ggaaaaaata agagagagca       600
     gctgaaaaaa aaacaaatgt gacaaagata cacaatattt atgaaaatga gagagagtgg       660
     tggtggtttt gtaccatgga aagagtgtgt ttcaaaataa aaaaaaaatg cagagaaggc       720
     ggctgaaaac aaaagtgaca aagtaatcat ggtatgtgca aggaatgaag ttgtgggaaa       780
     aaaatgttga aaaatacaga gattactaca tgattgtggc tgtgtatctg cattgaatgc       840
     tacatcaatt gggtgaaaac ggttttgtgc tgaagataga aaataataat tattgtagtg       900
     gtgatttggt tttgtaccat tgaatgagtt gatttagaaa gagatggtta tgtaccgctg       960
     gtgtcgttgt attatggttt tgtaccaaaa gaaagaaata atgatagatg tgtgccgaac      1020
     aaatgattac gtaatggtta tgtaccaatt tgaagactgt tgcgtaaact ggtgatatgt      1080
     tgacatgata acattttgaa taactgaatt ggtaagtgtt acttaactga tgtcggaatg      1140
     aattaccgtt aaaaaaaaaa aaaaaaaaag atactggtaa ttcagcacag aatatgtaca      1200
     atcgttgcac gctcaactat ggatggcttt gcaaagcaga atcaagcctt ttgatgtttc      1260
     cattgaaacc agtcgtttac caaccgagtg ggagacctgg aaactagatt tggagtcatt      1320
     cttcttggca catggcatag acaaacaatc ggacaagcga gcgcaactgg cataccttgg      1380
     aggtcctggt ttacaggagt tacttcgcca tcttcctgga atcaatcagg ttccacacgt      1440
     aacaatcgat ccaccatact atgatgtcgc gatcaaatgt cttgatcaat attttgagcc      1500
     ttttcgtcgc aagacatacg aaaggcatct gtttcatcag attgtacaac aacccggcga      1560
     aaggttcacg gattttgtga tgcgtatgcg taagcagatt gcaaggtgca gttatgatcc      1620
     tagtgtggtg gatgaactca ttgcggatcg tattgctcaa ggatgtgctt cggaggagct      1680
     acggacgaag ttgttacaga aagaccgtac tctggatgaa gtactaacgt tgggaacaag      1740
     cttggcagag tcacaccagc aatccaagaa acttggccgt cccattacac gtcacgaacc      1800
     ggaagtgtat gctgtatcaa atcgaccatt ccgaaatgac caacagccaa tgaagcgcca      1860
     gttcggtttt caacctcgtt atcagcctaa atataatcaa accaaccgtt tcagctgcta      1920
     cggttgtggt cgtcgaggac atattcacgg aagtagcgaa tgtccagcca agcatactaa      1980
     ttgtgctgct tgcgggaaag ttgggcattg ggctaaacgt tgttatagtt ccggtggagt      2040
     gaaacgtaaa atgaaccgtc ctgtatcgta tcctaaggca aagcgaatcc gtgcggtagc      2100
     tgaagaaatc gagaaggagc aatcgaagga ttacgtattc tatgcgatgg gaggcaacgt      2160
     gtttacgttc aaagttggag gaattcaaat acctatgacc atcgattcag gatcggatgc      2220
     gaacatcatc accaagaagg tatgggagga attgaaggaa gctaaggtgg aagcaatgga      2280
     aatgacaaca caggcagacc gatcgcttgt tggatatgcc agtaagcagc caatgcagat      2340
     tgctggaaca ttcaatgcac aaatcgaggc cggagagaac aagactgttg caaagttcta      2400
     tgtggtcgag gatggtcagc gctgtttact tggcgaccga acagcaaaag aactaaacgt      2460
     tctaaaagtc ggatttgaca taaatgcagt tggcacaaac aaaaacaaac cgtttccgaa      2520
     aattcgtgga gttgtcgttg aattaccgat tgaccctgat gttcaaccag ttcaacaagc      2580
     ctacaggagg ccaccaatcg cgtgggaagc aaaaatagaa gcaaaactga aaactctatt      2640
     ggatctagac atcatcgaac cagtttcagg gccatctcca tgggtatcac cagtggttcc      2700
     agttatgaaa gattcaggtg aagttcgttt gtgcatcgac atgcgcagag ccaaccaagc      2760
     agtgttgcgc gaatcgcatc ctttgcctct agttgacgag ttgcttggat cggtttgcgg      2820
     agccgtgcga ttttcgaaaa tcgatattaa agatgcctat catcaggtcg aaatttcgga      2880
     acgctcgcgg ccaattacca cattcataac caaacagggt ctattcaggt agagagaagt      2940
     tttaataaaa aagggttttc ttgttattag taattgattt cagcaaaaaa aaataaatat      3000
     tgtaaaaaca agtttatttt caaatacgtt tttcctaact tttattattt agatacaaac      3060
     gactcatgtt tggagtaagt tgtgcacccg aattattcca aaaggtaatg gagtcagttg      3120
     ttgcggggtt ggatggagtc attgtatatt tggatgatgc agtcgtttac ggaactacag      3180
     ttgatgaaca tgaccgtaga ctggcagcgg ttctcgaaag gtttgctgag tacgagattc      3240
     tgcttaacga gaaaaagtgc gtgtataaca ctgacacttt agaatttctg ggtcatcagc      3300
     tatccgttga aggtgttaaa ccaacggaaa gtagaattct agccatacag agtttccgag      3360
     agcctcacaa tttatcagaa ttaagaagtt tcctgggttt agtttgctac gtgggaagat      3420
     ttgtcccaaa cctggcgtca ttgacagatc ctctgagaca actgctgcgt tcgaaagatc      3480
     aatttgaatg gacattgaag cacaattctg catttcaacg gattaaagat gaaatctctc      3540
     aaattcatca tctcgggttt ttcaacccaa aagatcaaac caaattaatg accgatgcca      3600
     gtccaaccgg actaggagcc gtgcttatgc aagtagactg taaaggaaga tgtcgggtga      3660
     ttgcatacgc gagtaaggcc ttaacggagt tggagaggaa atattttcaa acagagcgag      3720
     aagctttgtc gttagtctgg ggagtcgaaa agttccggtt gtaccttcta ggcatccggt      3780
     tcactctagt aactgactgc aaagctctaa agtttctttt taaccctaga tcgaggccct      3840
     gtgcccgcat tgagcgctgg gttctaaggc ttcagggata tacattcaag gtagaacacg      3900
     ttccagggtc tgaaaacata gcagatgcac tatcaagatt aagtatgcca gtaaacgaga      3960
     cgtttgatga accgactgaa ggatatatac ggaatatcgt tgcagaatca attccaatgg      4020
     cagtaacgtt tgagaaggtc attgaagatt ctaaaaatga tgcaagtatt caaaaagcca      4080
     ttgaagcatt acaggaggga atccgagaga atatgcccaa agaattcaaa ccgtatgttg      4140
     atgaattatg ctcggttgat ggcgtactct tgagaggtaa tcggctagtc atccctacac      4200
     agctacaaga acgaatagtt actttggccc atgaagctca cccaggaatg gcggctatga      4260
     aacggcggct tcgccagaag gtatggtggc cacaaatgga caaacaggtg gagtcgtttg      4320
     ttaaacggtg taaagagtgt actatagttt cctgtctagg agctccagaa ccattgaaac      4380
     gcaccagaat gccggaaaag ccctggaaag atatcgcagt agattttatg ggtccactgc      4440
     cctcaggtca ctcgctgttt gtaatagttg actattttag tcgttttacg gaagcagttg      4500
     ttatgagaac gattaccgca aggcgtacaa tcgaggcact gcatgaaacc ttcagtagat      4560
     tcggtgttcc cgagtccatt agatcagaca atggaccaca gttcattagc gaggaattta      4620
     aaacatactg tgaagaatat gggatcacat tgctgaggac gacaccgtat tggccacagg      4680
     ccaacggaga agtagagcgg gcaaacaaaa caatattgaa gcaccttaaa ataagtcaag      4740
     agataggaag tgatgattgg atgtgggatc taagatcgtt cctattgatg tacaattcaa      4800
     cccctcatgc atcaactgga gtggctccat caactttaat gtttggacgc atattacgtg      4860
     acaaacttcc tgctttcgga gatgtatcat tacgaatgga tcaagaagca atacgtgata      4920
     gagattggga gcggaaattg aaggatgcgg aatactcgaa tgaacgccgg caagcaaagc      4980
     attctgacct aaaggagggc gatgtagtat tgtgcaagcg aatggtgaaa gagaataagc      5040
     tgtcgagcac atttgcacca gaggagtatg aagtcattag attggaaggt tcagatgcct      5100
     cattgcggtc aatcaactca ggtcggaaag tgcatcgaaa tgtggctcat ctcagacggc      5160
     tgactagcga caaaccggat gaacgtaaac aaacggaaga accaccgcca acgggaatga      5220
     acgagaataa atccataaat gacgacaacg ttgctggcga atccaacacc acacgaccga      5280
     aaaggcttca tcgtattcca gcttatctta atgaatacga aacggatgca gtgtaagact      5340
     ttaaaggaaa gggggga                                                     5357
//
ID   Gypsy-158_AA-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   AAGE02017317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-158_AA_;
KW   Gypsy-158_AA-I; Gypsy-158_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017317; Positions   50100   49916.
XX
SQ   Sequence 185 BP; 60 A; 27 C; 57 G; 41 T; 0 other;
     tgtcgggacc aactaggccc tttgtaatac tgggtcagag aataggtaag tctggcaaca        60
     caggacgttg agtagaggag agaggaaaag cagttgagga tcggacggta gcgtgaacgg       120
     atagtcgcaa ataaacggtc tttgtaaaag tttaagaagt gcgttgttaa taagtgaatc       180
     cgaca                                                                   185
//
ID   Gypsy-159_AA-I repbase;    DNA;    INV; 6613 BP.
XX
AC   AAGE02017724;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-159_AA_;
KW   Gypsy-159_AA-LTR; Gypsy-159_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6613
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017724; Positions   11377    4765.
XX
CC   Positions [4926-5402] - Integrase core
CC   'ACAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           427..2631
FT                 /product="Gypsy-159_AA-I_1p"
FT                 /translation="MDLTTQYHKMDVSHLSIDEVEYELFIRKISYNLNEHE
FT                 SVKRRKLKDQLRKERALDSPVLIGSGTWSTTSDELRVIFSKLITIGSLLES
FT                 SKLDARNREKLITRLVHFRVRISRLHSASDSHKFVAEIAKLEKEVNHICKQ
FT                 HCPLLASVAEEEDVEVELSKVLEEVRTEIVDLNQSIAPAESEEAQSNERRN
FT                 FQIAEKEKELNSSIRRMEEILGQLTNYENGQVEDLPNLLRAFKDFVIQTSE
FT                 LDKKRRQREIEKEQQKMKEAEQHLQNKIRLEKLLANLNENLKSDVVAKKST
FT                 GESLSLASIEPRKSEKVRFESNRSSSKLYATASENESSCSESSVLCVEPRY
FT                 SKPTKTRSRKLSHAPRSRSSHKHDSERKGRKKYESTDSVTESESSRSSKSS
FT                 SRSSLSSECSSDHHRRHRRGKSKRERSRSTRRVSVSEWRLKYDGRDEGRKL
FT                 SEFLKEIKMRARAEDVSDRELFRCAIHLFSGRARDWFLDGYENRDFRNWSQ
FT                 LKRELKREFLPPDLDFQLEIQATNRRQGRGERFVDYFHEMQKLFHTMTKPI
FT                 SERRKFDIIWRNMRHEYKNAMTSANIRSLSKLKRFGRTVDENNWYLYHRSS
FT                 DNQKSRNPQVNEISGSKDRPKKEAPSNNTRVFQNSKYATNKPQKIDSEKPR
FT                 QPEPSKESRQETQPSEVMAGPSNALLKISPDQYKRPPNGVCYNCRKSGHHY
FT                 SECKERLQKFCRVCGFLDVFTSACPVCSKNVESSA"
FT   CDS           3012..5795
FT                 /product="Gypsy-159_AA-I_2p"
FT                 /translation="MIVAPKLHRRLILGAGDFWRAFNIRPTVQTTVEIDEI
FT                 DQPENELELTDQQISELETVKQMFKIAIEGEYLDTTPLITHRIEIKDEFKN
FT                 SPPIRINPYPTSPQMQTKINAELDKLIAQHVVERSHSDWSLSTVPVVKPNG
FT                 EVRLCLDARRLNDRTQRDAYPLPHQDRILSRLGKSRYLSTIDLTKAFLQIS
FT                 LEPKSRKYTAFSVLGKGLYQFTRLPFGLINSPATLSRLMDEVLGYGELEPE
FT                 VFVYLDDIVIVSETFEAHLNSLREVARRLKNANLSVNLEKSKFCLNELPYL
FT                 GYLLTPDGLKPNPDRIEAIVNYERPTSIRALRRYLGMANYYRRFISNFSEI
FT                 TAPLTNLLRKKPKTIVWNEQAEKAFIDIKECLIAAPVLCNPDFSRPFQIQS
FT                 DASDTAIAAILTQQYDEGEKVVAYFSQKLTPAQQAYAASEKEGLAVLSAIE
FT                 KFRPYIEGTHFVVITDASALTYIMRGRWRTSSRLSRWSIELQSYDLEIKHR
FT                 RGKENIIPDALSRAVESMDVEDSGDTWYSDLMNKVRESPEDNLDYKIEDGK
FT                 LFKLLPTKTDVLDYTHQWKLCVPHDLRSQVLKEEHDDSLHIGFEKTLDRVR
FT                 KLYFWPKMSASVQRHVQHCRVCKETKPANVSQHPEMGKPRLVTKPFQILSI
FT                 DYIQSLPRSKSGNAHLLVLLDLYSKWTVLVPVRKISTSLTIKILEEQWFRR
FT                 FSVPEILISDNASSFVSHDFKSFLERFHVKHWTNARHHSQANPVERLNRSI
FT                 NACIRTYVKSDQRLWDTRISEVEHVINTTRHSSTGFTPYRIVFGHEIVSSG
FT                 DQHIREVDVRDLSPEERIEQKQAADSKLADLVRRNLEKAHEHSRRNYNLRY
FT                 NKPSPVYQVGQQVYRRNFTQSSAAESYNAKLGPTYIPCTVVARRGTNSYEL
FT                 ADDQGKIVGIFSAADLKPGVAVSE"
XX
SQ   Sequence 6613 BP; 2076 A; 1370 C; 1491 G; 1676 T; 0 other;
     aatggcgccc aactaaatca atcgaaaagc taatcagatt tcaaaaaata attggcatta        60
     tttttttcac acggagagta ggagagacaa attgaacaaa tttacagcaa tacacggtaa       120
     ttaaccccat acttctgata taacggaacc acgcaaaggc ggcttactag tgcgcgtacg       180
     ttttctgaag agagcatttg agcagttgtt cggtgaataa gtgagcgagt gaacgaagtt       240
     ggaacaagta tttcgagttt agaacaaagt tagaaacggg tcttgattcg atgatttttt       300
     aggaacaaat ttagcttact gattgaacga ttctcagagg aagtgattgc gatattatcc       360
     cgctagtgcg gtagcttaga ataacaaatt ttgattttct ttattggtca tagttgatag       420
     ctcaacatgg atcttacaac acagtaccat aagatggacg tgtcccattt gagcattgat       480
     gaagtagagt atgaattatt cattcggaaa atttcgtaca atttgaatga gcacgaaagc       540
     gtgaagcgac gcaagctgaa ggaccagttg aggaaggaga gagcgttgga tagtccagtc       600
     ctgataggta gtggtacttg gtccaccaca tccgatgaac ttcgagtgat tttctccaag       660
     ttgatcacta tcggaagcct gttagagagt tccaaactgg atgctagaaa tagggagaaa       720
     ttgattacgc gattagtaca tttcagagtg cgaatctcac gattacactc agcgtcggac       780
     tctcacaagt tcgttgcaga gatagctaaa ttagagaaag aggtgaatca catctgcaag       840
     cagcattgtc cgctactagc atcagtggcc gaagaggaag atgtcgaggt agaactgtcg       900
     aaagtgttag aagaagttag gaccgagata gtcgatttga atcaatcgat tgctccggct       960
     gagtctgaag aggctcagag taatgaacgt aggaattttc aaattgcaga gaaggagaaa      1020
     gaactgaatt cgtcaatcag acggatggaa gaaatattag gtcaattaac aaattatgag      1080
     aatggacagg tggaagatct cccaaattta ttgagagctt tcaaagattt tgtaatacag      1140
     acgtcagagt tggacaaaaa acgtagacag agggaaattg aaaaagaaca gcagaaaatg      1200
     aaggaggctg aacagcatct tcagaataaa attcgactcg agaagttgtt agcaaatctg      1260
     aatgagaacc taaaatccga tgtagttgcg aagaaatcga ccggtgaatc gttgtcgtta      1320
     gcatccatcg agccgaggaa atctgaaaaa gtaaggtttg agtcaaatag gtctagttcg      1380
     aagttatatg ctacagctag cgagaatgaa agctcatgtt ctgagagctc tgtcttatgc      1440
     gtagaacccc gatacagtaa acccaccaaa actcgatcac gaaaattatc tcacgctcca      1500
     cgatctcgat ccagtcataa acatgactca gagagaaagg gtaggaagaa gtacgaaagc      1560
     acggactccg tcacagagag tgagagttct aggtcgtcga aaagtagtag tagatcgtcg      1620
     ttgagctccg aatgctcttc tgaccaccac cggcgacatc gtagaggaaa atctaagcga      1680
     gagaggtcta ggtcaactag acgagtctca gtctcagaat ggcgactaaa atacgatggt      1740
     agagatgagg gtagaaaact ttccgagttt ctcaaagaaa ttaaaatgag agctcgagcc      1800
     gaggatgtga gcgataggga gcttttccga tgcgcgattc atctgttttc aggcagagcc      1860
     agagactggt ttctcgatgg ttatgaaaac cgtgactttc ggaattggtc tcagttgaaa      1920
     cgagaactca agagagaatt tttgcctcca gacctggact tccaattgga aatccaagcg      1980
     acaaatcgtc gccaaggtcg cggtgagaga tttgtggatt attttcatga aatgcagaaa      2040
     cttttccaca cgatgacgaa acctatttct gagcgtcgaa aattcgacat aatttggcgg      2100
     aatatgcgcc atgaatataa aaatgcgatg accagtgcaa acattcgtag tttgtccaaa      2160
     ctcaaacgtt tcggccgtac tgtagacgaa aataactggt atttatatca cagatcgtct      2220
     gacaaccaga agtcaagaaa cccacaggtg aatgaaatct ccgggtccaa agaccgaccc      2280
     aagaaggaag caccgtcaaa caatactaga gtgtttcaaa attccaaata tgccactaac      2340
     aaaccccaga agatagattc tgaaaaacca agacagccag aaccgagtaa agagagtcgg      2400
     caggagacac agccctccga ggtaatggct ggaccctcca atgctttatt gaaaatttca      2460
     cccgatcaat acaagcgacc cccaaacggt gtctgttata actgtcggaa atcagggcat      2520
     cactacagcg aatgtaagga gaggctacaa aaattctgcc gagtttgtgg tttcttagat      2580
     gtattcacga gtgcttgtcc cgtctgttca aaaaacgtgg agagttcagc ttgagagggc      2640
     aagctgaatt tcttcaagaa agtccctcca atgcagagat ttcgcaaagc ttacgagata      2700
     atggctttat tcctttcgcc gaaacggatt cttataaacc accagagctg gaagagctct      2760
     tcctttacaa cgatggagat gctcgacctt tcgttaaagt acagatactg gggaaagaaa      2820
     taattggctt gctcgatagc ggtgcagaac gctctgtgtt aggcagagga gctgaaaaat      2880
     tattgaaatc tctcaatctc aaaattcacc cctctactat cacacttgta aatgcagcag      2940
     gcaataacat tccagttatt ggctgtgttg atttacccat atactttgac aaacaagtga      3000
     aaataattcc tatgatcgtg gcaccaaagc tccaccgacg attgattctc ggagcaggag      3060
     atttttggag agcattcaat attcgtccca cagtccagac gaccgtggag atcgacgaaa      3120
     ttgaccagcc agagaatgag ctcgaactaa ccgatcagca gatcagtgaa ctcgagaccg      3180
     tgaagcaaat gtttaaaatt gcgatcgaag gagagtatct ggacactaca cctttaatca      3240
     ctcacagaat agagattaag gatgagttca agaactcacc accaatacgc ataaacccat      3300
     acccaacatc tccccaaatg cagacgaaga taaatgccga actggacaaa ttgattgctc      3360
     agcatgtagt tgaacgaagt cacagcgact ggtcactgag cacagtaccg gttgtcaaac      3420
     caaacggaga ggttaggctc tgtctagatg cccgtcgttt aaatgatcgt acccaacgcg      3480
     atgcctaccc gctaccccac caggaccgta tattaagccg tttaggaaag agtagatatt      3540
     tgtcgactat cgatctcacg aaagcgtttc ttcaaatatc gctcgaaccc aaatcgagaa      3600
     aatatacggc tttctcggtg ttgggtaagg gtttgtatca attcactcga ttacctttcg      3660
     gtctcataaa tagtccagcc actctctcca ggctgatgga cgaagtattg ggatacggag      3720
     aacttgaacc ggaagtcttc gtttatcttg atgacattgt catcgtaagc gaaactttcg      3780
     aagctcatct caatagctta cgagaagtgg cacgtcgact taaaaacgct aacttgtccg      3840
     ttaatttgga aaaatccaaa ttttgcctga atgaacttcc ttatcttggc tacttattaa      3900
     ccccagatgg cttaaaaccg aatcctgatc gcatcgaagc gatcgtgaat tacgagcggc      3960
     ccacctcaat tcgcgccctt cgacgctatt tggggatggc gaattattac cgccgcttca      4020
     taagcaattt cagtgagata accgcgcctc tcactaattt gcttcgtaaa aagccaaaga      4080
     caatcgtttg gaacgagcaa gctgaaaaag cattcattga catcaaagaa tgcctaattg      4140
     ctgctccagt tctatgcaat cctgacttct ctcgaccgtt tcaaattcag agcgacgcga      4200
     gtgatactgc gatagcggca atactgacgc agcagtatga cgaaggagaa aaagttgtcg      4260
     catacttttc tcagaagctc actcctgctc agcaagcgta tgcagcttcg gagaaagaag      4320
     gacttgctgt tctgtctgca atcgaaaagt tccgacctta catagaggga actcacttcg      4380
     ttgtcattac tgacgcatcg gcgctcacat acatcatgcg tgggaggtgg cgaacttctt      4440
     cacgtttaag ccgatggagt atcgagctac agagctacga cctcgagata aagcatcgac      4500
     gggggaaaga gaacattatt cccgatgcac tatcaagagc cgttgagagc atggatgttg      4560
     aagactcagg agatacctgg tactccgatt tgatgaacaa ggtgagagag tcccccgagg      4620
     acaatctcga ctacaaaatc gaagatggaa aactcttcaa acttttgccg actaaaaccg      4680
     atgttttaga ttacacacat caatggaaat tatgtgtccc tcatgattta cgttctcagg      4740
     tgctaaaaga agagcacgac gattcgttac atatcggctt tgagaaaaca ttagaccgag      4800
     tgagaaaatt gtatttttgg ccgaagatgt ctgcttctgt ccagaggcac gtccagcatt      4860
     gtcgagtttg taaggaaacg aaaccggcta atgtttctca acaccctgaa atggggaaac      4920
     ccagactagt aaccaagcca ttccaaatat tgtccattga ctatatacaa tcattgccca      4980
     gaagcaaatc tggcaatgcg caccttttag tccttctgga cttgtactca aagtggacag      5040
     tgttagtacc agttcgaaag atatcgacta gtctaaccat aaaaatcctt gaagaacagt      5100
     ggttccgaag attttcagtt ccagagatct tgatatcgga caatgcgtca agctttgtca      5160
     gccacgattt caaaagcttc cttgagcgat tccatgtgaa acactggacg aatgctcgac      5220
     accacagtca ggccaatcct gtggagaggc taaatcgtag catcaatgcg tgcatcagaa      5280
     cctacgtgaa atcggaccag aggttgtggg acactcgcat ttccgaggta gagcatgtga      5340
     tcaacacaac tcgacactca tcgactggtt tcacgcctta caggattgtg tttggacatg      5400
     agattgtctc ttctggtgac cagcacatcc gagaagtaga cgtaagagat ttgtctcccg      5460
     aggaacgaat tgagcagaag caagctgctg atagcaagct cgctgatctc gttcggagaa      5520
     acctcgaaaa ggcacatgag cacagtcgtc gcaattacaa tttacggtac aataaaccct      5580
     ccccggtgta ccaagtaggt cagcaagtct atcgtcgaaa tttcactcag tcgtctgcag      5640
     cagaatccta taatgctaaa ctaggtccaa cttacatccc ttgtacagta gtcgcacgta      5700
     gaggaactaa ctcttacgag ctagctgatg atcaggggaa gatcgtcgga atcttctccg      5760
     ctgctgatct taagccagga gtcgcagttt ctgaatgagt tgtcttgtct gtccatgtca      5820
     agtcattgtc aggtcagttg gtgaattcca cccaatgtag tatagtcgtt ttgtccgaga      5880
     taaatagaaa cgtccttagg ttcaatcttt gttgcatatt tagcaaaatt gtcgatcgat      5940
     cactaaaagt aaacaaatcg ttgagagaga aaattaggta gagactcaag cttgcgtgtt      6000
     aggtgtttgt gtagatgttt tttttttgtt catagcccca atccccatca accgccattg      6060
     cattctaaag gagtagcgtg ctcattgaaa ttgtcgaaat gaccaaggta attaaaacag      6120
     ctaaatgcag acaatcaatg cgcttagtag caattttaac cggtttagct ccgcactcaa      6180
     gaagaataca atattggcca attttcaacg caatagacca ctaaatttac aaaatttccc      6240
     agaaattccg caacaacact tagcactgcg aaccacacga agctatttga gaatcaaatg      6300
     gctattgtgt tgcttgagag atgctctatc agtaagcgag tccgagaaag gtataggttg      6360
     attttcttgc agtatacgaa taaaacaccc ctgaaagtaa tagggtaaag cgcgtaaaat      6420
     ggtacttgtt cgagtttcag gaactagttt gctattttgt tgaatttcgc gttcataatg      6480
     ctacttttca catgagtcga gtcaaacatg aaaggtgttg tcccaaacct gggcttattt      6540
     tgtaagggaa agtttaaatg aaaataaact ttatcttcga taaagtttat tttctagagg      6600
     gagtatgtgg tag                                                         6613
//
ID   Gypsy-159_AA-LTR repbase;    DNA;    INV; 1071 BP.
XX
AC   AAGE02017724;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-159_AA_;
KW   Gypsy-159_AA-I; Gypsy-159_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1071
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017724; Positions    4764    3694.
XX
SQ   Sequence 1071 BP; 329 A; 248 C; 235 G; 259 T; 0 other;
     tgttaccgtt tgtaacaata agcctgttag tttgtaagtt tttgtatttc ctattattat        60
     tatttatatg tctccgtgaa attttaaatt taaatcctat tgcatgccat aaaaacaccc       120
     ctacacctga tataaattta gtacactaca ctacaataaa aactagctat aagtaaatgt       180
     ataacagtta gagttcagtg gaggaaaagt aagagaaaaa gactacccaa cgatagaggg       240
     attaggcatc ggagaaggat agattcggtc tatttcctat aaggatccaa ttcgaagtgg       300
     acgttagaag ttaaaagaaa gttaaaagga agttaagaga gttaagaaag agaagtgagg       360
     agcgaagaag cgaatcaggt atgcctgtga ctgcagaaaa attgttagac cctaaaaggt       420
     tatattcgtg aatttaggac ccgttgaggt taattctgga aactccttcc ggattgagtc       480
     ccttagagcc cgctagggca tttgaatcca ggtagaacga agcctgctcc aaggtagaac       540
     gaagcctgct ccaagaccaa gtgaccgagt acgtagaatc ccgtggccga cgacccggtt       600
     tcgaaggacg ctaacctcca ggacgggtcg ttcttaggag tcgaggccaa cgagcgtcca       660
     ttcccagcac cccgttcagc ttttccacgc tgtcagctcc gtcgaacctg ctccgtagta       720
     taccgtgcca ccatccctgc agagatccct gaatataccg gccggttagg taattagaca       780
     tagcgacact acactgcaca cccacccaca cagatatgta cattgagggt aatatacagg       840
     ctacattata aatcaccaaa gctttcattt acacccatcc caatatccga ggtctgatta       900
     gcctaataga gtactccagc cgaccttgag accagagagg tgctccagat cgcgctagcc       960
     aagaaaagag gtccttgacg cacccaacct caaaaggcag gccgttgctt agccaagctt      1020
     gccggggtct ttgtcctggt aacccacgtg ttgcccaacc tagcagtaac a               1071
//
ID   Gypsy-15_AA-I repbase;    DNA;    INV; 4370 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_AA_;
KW   Gypsy-15_AA-LTR; Gypsy-15_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4370
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 999-999 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3300-3761] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2334..4289
FT                 /product="Gypsy-15_AA-I_2p"
FT                 /translation="MFHDESFEWKPDRIAAYEDIKSALISPQVLMPYDPNL
FT                 PLVLATDASKFGLGAVLSHRLANGRERPIAYASCSMSATEQRYPQIDKEAL
FT                 AIVWAVKKFFNYLYARKFTLITDHKPLTQILHPTKSLPTLCISRMANYADY
FT                 LAHFNFDVLYKSTKENVNADYCSRITRFPTSSDVNTLSVYQGRKNAEDEFE
FT                 LFTLNQLAQLPIRAEHIARETRKDPSLGKIVQLLENGSELARFGYKAPEAK
FT                 YTLSASCLLFEHRVVVPAILRQSVLNDLHVSHIGMVKMKGIARSFVYWPGI
FT                 DTDIEKTVKACSDCARQAHAPPKFSDHHWQYPKCPWERVHIDYAGPVAGSM
FT                 LLIIVDAYSKWLEVKVTNTSTTAATIGILDELFSRHGVPVTVVSDNGPQFT
FT                 AVEFKNFLQKSGVKFHKLSAPYHPATNGQAERYVQTTKDAMKAMGTTASTL
FT                 HSDLNIFLQLYRRAPHATTGESPSKLFIGRNIRTRLDLLKPEDIHRKITAK
FT                 QGANFRPSFRELDPGQQVYFLSGNCRMDKWIPGVIAVRLGDLHYEVEYAGK
FT                 RFKRHIDQIRSRIGRQGSQVTEATISEAPTELDASRRIHFYGNGGTLSSAP
FT                 TTPSNARNAPADQGSPEFHTPSASPMNDAIQRDCSPFILRRSTRVRRPPCK
FT                 YSP"
XX
SQ   Sequence 4370 BP; 1209 A; 1055 C; 997 G; 1105 T; 4 other;
     ttttggtgtc agaagtggga tttagaggca agttttccgg tcgagagtaa cgcgttcgtt        60
     tcggtctcgc gaaaatcaag atggctaacg aagagctaat ggcatctctt acccagatgt       120
     tagccaatgc cctcaaatcc tccattgaag cagtggctgg cgcacaagtg gaccccgctg       180
     ctagagctgc agcgtcacag ccaaagccgc ccactttttc agtttccgaa taccgctcct       240
     cggacaacgc caccgtatcg gactattttc ggcgttttga gtgggcgtta cagttgagca       300
     atatccctgc tgctcaatac ggacattacg cccgagtaca catgggtacg gagctgaata       360
     atgccatcca gtttctagtg agtccaacgg atccagaaac tctcacattc aatgaaatac       420
     gtacgacgtt agttgaacac tttgatcaag caaaggataa gtacgtagag agcattaaat       480
     tccgggcaat tgttcagcaa aakagcgagt ctgtctctag ctttgtcctc agactcagac       540
     aaggagcagc acactgtgag tacggagact ttctggacag aatgctaatc gaacaactcc       600
     ttcatggcct cgagtctcgt gaaatgtgtg acgaaataat cgctaaaaag ccagcgactt       660
     tcaaagctgc tttcgaagtt gcacataccc tggaagcaac ccgcaacact gccaaagaag       720
     ttcgaacggc tagaccgtcg tcgatcatag aggccaccaa caagctgggt tacgaaaaac       780
     cgaagacccg taaagtgaac tcttcctcaa aacagaacaa acagtttagt gaaaaacaat       840
     ctgactcaag tgtgtgtagt ggatgtggtg gtaaccatac ccgaaatatg tgcaagtttc       900
     gtgatgcaaa gtgctacaat tgtgagcgta agggccacat ctccaaagtg tgtagatcct       960
     ataagcggaa acttcaggat caatccacat cgcaggtgca atcagaagtg ttaccggctt      1020
     cacaagtaga tgtagtccag tcgctgggaa aaatccactc cgtcaacacg tccccgaagc      1080
     tagttattaa tgttaatatc gacggacata ccttggacat ggaagttgac accggtgcac      1140
     cgtgcggtat catcagtgaa gccaaactgc gtattatcaa accccatttc actctacaga      1200
     aatctgatcg gcagttcacg agctacactg gtcatcgtat aaagtgtttg ggccgacttc      1260
     cagtgagcgt atgtatcggt actacaacac gtaaactcga tttgtatgtg gtagccgaag      1320
     attacgatac gctattcggt agagagtgga tctcacagtt tacaaccgaa gtgaatttga      1380
     gtaaactttt tggtgttagt ggtacggtaa actcgctggc gattgctcat tccacgatct      1440
     cgcmggatca acagcaagct ctgtcggagt tgctggccaa ctatgatagt gtttttggcg      1500
     atatcgcggg gatactaaaa ggtcctccag catcggtaca ccttaagcct ggtgcaacac      1560
     ctgtgtttgc aaaagctcgt gacgttccgt tggcattgaa gagccagtac gcacaagaaa      1620
     tcgacaagaa actttgtgct ggcgtgtatg agcgagtcga ctactctgaa tgggcatcac      1680
     ccacccatat tgtggtcaag aaaaatggaa aactacgcat caccggaaat tacaagccca      1740
     cggtaaatcc ccggatgatt atcgatgaac acccgatccc aaagatcgaa tccatcttca      1800
     accaaatgcg aggagccagt ctgttctgcc acttggacgt gacggatgca tacacccacc      1860
     tcccaatcga cgaagaattc cgacacgttc tcacgctcaa tacaccaaca catgggttgg      1920
     ttcgtccaac cagggctgtg tatggtgcgg ccaatattcc tgcgatatgg caacgtcgaa      1980
     tggaaacagt gcttcaaggt ttgcccagtg taattaattt ctatgacgat attattgttt      2040
     ttgcggatag tttcgaaaac ctgttgatcg ctctcagagc tgttttcgac aaactcaaag      2100
     aacacggctt acgactgaac cgttcaaaat gtgtttttgg taccccggct ctcgaatgtc      2160
     tgggacacaa gatcgacgcg macggtttgc acaagtcgga ccaccatatt gaagctgtac      2220
     gagacgcacc acgtccatcg aacacagatg aactccagct gtttttgggt aaagccacct      2280
     actacaacgc tttcattcca aatctctctt cacgctctcg ttgtctacgt gacatgttcc      2340
     acgacgaatc gttcgaatgg aagcccgata ggattgccgc ctacgaagat ataaaatctg      2400
     cgctcatttc cccgcaagtt ctcatgccat acgatccgaa tcttccgttg gtgttagcca      2460
     cagatgcgag caaatttggg ttgggagctg tactctctca tcgtctagcg aatggtcggg      2520
     agcgtcctat agcgtatgcc agctgctcaa tgtctgctac tgagcaacgt tacccgcaga      2580
     tcgacaaaga ggctcttgcc atagtttggg cagtcaagaa gtttttcaac tatctttacg      2640
     ctcgaaaatt cacgcttatc actgaccata agcctttaac ccaaattttg catcctacaa      2700
     aatcgctacc aactctgtgt atcagcagaa tggcaaatta tgctgattat ctggcacact      2760
     tcaattttga tgttctgtac aagtccacaa aagaaaacgt taatgcagat tactgctctc      2820
     gaatcactcg ctttccaacg agttctgatg tgaatacact ttcagtttac cagggaagaa      2880
     agaacgcaga agatgaattc gaactgttta cgttaaacca gctagcgcaa ctaccaattc      2940
     gtgctgaaca catcgctcgc gagacgcgga aagatcctag ccttggtaag atcgttcaac      3000
     tattagaaaa cggctccgaa ttggcacgat tcggatacaa agcaccagaa gcaaaataca      3060
     ctctcagtgc gagctgtctg ttgttcgagc atcgtgtagt ggttcctgct attcttcgtc      3120
     agtctgtgct gaatgatctc catgtgtcgc acatcggtat ggtgaaaatg aaaggaattg      3180
     ctcgttcatt tgtatactgg ccgggaatcg atacagatat cgagaagact gtgaaagcct      3240
     gttccgattg tgctcgccaa gctcatgctc caccgaaatt tagtgaccat cactggcaat      3300
     atcccaaatg cccctgggaa agagtacaca ttgattatgc cggtccagta gcaggctcta      3360
     tgttgctcat catagtcgat gcgtacagta agtggttgga agtgaaggtc acgaatacgt      3420
     caacgactgc agcgacgatc ggcattttgg atgagttgtt ttcacgacat ggcgtacccg      3480
     tcacagttgt ttcggacaat gggccgcagt ttaccgctgt ggaatttaaa aacttcctgc      3540
     agaaaagtgg agtgaagttt cacaagctgt ctgctccata ccacccagca acaaatggac      3600
     aggccgaacg atatgtgcag acaacaaagg acgctatgaa ggctatggga acaactgcct      3660
     cgactctgca ttccgacctg aacatttttc tccagctata ccgccgtgct cctcatgcaa      3720
     ccacaggtga atcaccatcc aaattgttca ttgggcggaa tatcagaacc cgtctagatc      3780
     tgctgaagcc tgaggacatc catcgaaaga tcactgcgaa gcaaggggca aatttcaggc      3840
     catcattccg tgaacttgat ccgggtcagc aagtatattt tctttccggc aattgtcgta      3900
     tggataaatg gattcctggt gtgatcgctg ttcgactggg agatctccac tatgaagtcg      3960
     agtatgctgg gaaacggttc aagcgtcaca tcgaccaaat tagatccaga attggcaggc      4020
     aaggttctca agtgactgaa gcaactatca gtgaagctcc tactgaactg gacgcatcga      4080
     ggcgcattca tttctatggc aatggtggca cgctttccag tgctccgaca actccaagca      4140
     atgctagaaa tgctcctgct gaccaaggtt ctccagagtt tcacactcct tctgcaagcc      4200
     cgatgaacga tgctattcag cgagattgtt ccccattcat cttacgtcgt tctacaagag      4260
     ttcgtcgtcc tccatgcaag tattcgccgt agacgattca tttcgaaagg agggaagaaa      4320
     tgttatgtat gtaatctttt tatataamtt acttttgctt taaagtagtc                 4370
//
ID   Gypsy-15_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_AA_;
KW   Gypsy-15_AA-I; Gypsy-15_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1000-1000 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 173 BP; 59 A; 38 C; 25 G; 51 T; 0 other;
     tggcaacact gccgttcagt atattacaag acattcaatg agataaaccg ctatttcctc        60
     gagaaagttt taaattcgtt ttaaagtccg tttaattaac tgttctttga ataaagagta       120
     ctaaatgtaa tcgcgatagc ctactctacc ccaagatccc gaaataccca aca              173
//
ID   Gypsy-15_AnFu-I repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4552
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2900-2900 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..4539
FT                 /product="Gypsy-15_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSNPAGDPSSDEQRRISELFNTAAIFPXQQAPXNLHQ
FT                 RPSQNAAQASSSASAFSASSAEGTIILEMLQLMRQQLAQQQAFMAQFTQQN
FT                 PQPATQAPHPPPAQNNCTEQLIEWLASSITEFRFEPESGFTFEMWYSRYED
FT                 RFTSETSRLDDVTKSRLLLRKLGPTEHQRFTNFILPTLPRDLSFKQTVDKL
FT                 KLIFGKVESLLNKRYKCMQTKKAVGEDILEYAARVNRACENFQLAGMTEDQ
FT                 FKCLVFVCGMKEEADTELRTRALAAIEKAKVSNLEELAAECQYIASIKQDT
FT                 TLLAAKDEKVLAIQHQRPASRFNQQSHRQEHQQRQNHHQQYNRKDKPTNPC
FT                 WLCGALHWVSECSYKSHTCRDCGRTGHREGHCNKTNRHKHQRKFQRKHQAN
FT                 LRVVTVNVCSVRGRRKYVKLAINETPAELQLDTGSDISIINRQLWQRIGKP
FT                 ALTQPAVQAKTATGAGLQICGEFQANIKIGSITKTATIRVVTVDISLLGAD
FT                 LIELFNLGSIPMDSFCNKICSVAAIPSSIQQQFPAVFSGTGLCTKAQVQLH
FT                 LKHDCRPVFSPKRPVAYAMQETVDQELDRLEKAGIITPTDYSEWAAPIVVV
FT                 RKANGTIRICGDYSTGLNSALKSHEHPLPVPEDIFAKLAHCEYFSKIDLSD
FT                 AFLQVEIEEQYRPLLTINTHRGLYLYNRLPPGVKIAPAAFQQIMDAMLAGL
FT                 KGACGYMDDVVVGGRTSKEHDDNLSRLLHRIQDYGFTIREEKCAFKNKSIE
FT                 YLGYIVDRNGLKPNPAKIAAILNLPAPTDVSGVRSFLGAVNYYGKFVPKMR
FT                 DLRYPLDNLLKNDGKFTWNQQCEKAFRTFKEILSSKLLLTHYDPAADIIVA
FT                 ADASSVGLGATISHKFPDGSVKVVQHASRALSKAEQNYSQIDREGLAIVFA
FT                 VTKFHKMLYGRHFHLQTDHRPLLRIFGSKKGIPVYTANRLQRFALTLQLYD
FT                 FSIEYVPTGSFGNADVLSRLIRDYAKPESDYIIASLSLEDDLRFVAVQAIN
FT                 SFPLTFVDVQKATQEDTLLRKLSHYVTDGWPRNASFGSELARFHHRKEGLS
FT                 TVDGCILFGERLVIPEKLRARCLTQLHRGHPGIQRMKALARSYVYWPSLDN
FT                 DVQDVVATCPACAVAAKSPPHSAPAPWPKVSTPWQRVHIDYAGPLNGEYFL
FT                 VVVDAFTKWPEIIKTSSTTAVATIAILRSIFARFGVPVTIISDNGTQFVSS
FT                 EFKEFCLKNGINHITTAPFHPQSNGQAERFVDTFKRAIKKITYNGLGIQEA
FT                 LDIFLQTYRSTPNAQLENSTPAKLMFGRPIRTCLELLHPVPTPLLESQHGT
FT                 RRGFQNGAPVYAKLFKRNSWEWVPGTVVGSIGRVMYKIRTKERIIRSHINQ
FT                 LRKRAGDNERVTHDANPKVALDLLMDTWNIPLTSSIQYSDPRSPTPILNPP
FT                 AATVMPNIPTVFSPRRSSRPRRVPRRFDAYRLN"
XX
SQ   Sequence 4552 BP; 1362 A; 1067 C; 1054 G; 1066 T; 3 other;
     gtggcgacga ggatattttt gtggtttaag tgtattcgca attaactgtg ctaatttcgt        60
     gtgagagaaa gacactgtcc gtcatcgcgt tgcaatcgtt actgttcact acgttgtccc       120
     atcgtatcga gtttcgcgtc ttcgttcgcg tccgagtttt gtgtggtaaa aattccgtct       180
     tcgaggaaac gacgcaggat gagcaaccca gcaggagatc catcatcgga tgaacagcga       240
     cgmatatcgg aattatttaa tacagccgct attttccctc ascagcaagc gccacakaat       300
     ttgcaccagc ggccatcgca aaatgctgca caagcgtcat catcggcgtc agcattttcg       360
     gcatcatcgg cagaagggac catcattttg gaaatgctac aacttatgcg acagcaattg       420
     gcacagcaac aagcatttat ggcccaattc acgcagcaga atccgcaacc agcaacacaa       480
     gcaccgcacc cacctcccgc acagaataac tgcactgaac aacttattga atggctagca       540
     agcagcatca ccgagttccg gttcgagccc gagtcaggct tcacatttga aatgtggtat       600
     tcgcgctatg aggaccgttt caccagcgag acttcccgac tggacgacgt gaccaaaagc       660
     aggctgcttt tgcgcaaatt aggaccgact gagcatcaaa ggttcacaaa tttcattctg       720
     ccaaccttac cccgagattt gtctttcaaa cagacagtag ataaattaaa gctcatcttc       780
     gggaaagtcg agtcactgtt aaacaagcgc tacaagtgca tgcaaacaaa aaaagcagtc       840
     ggcgaggata ttttggaata cgctgcaagg gtaaatcgag catgcgagaa ttttcagttg       900
     gctggcatga ctgaagatca atttaaatgc cttgtgttcg tatgtggcat gaaggaagag       960
     gcagataccg aactacgaac cagagcattg gcagcaatcg agaaggcaaa ggtgtcgaac      1020
     ctcgaagaac ttgcagcaga atgccaatac attgcaagta ttaagcagga caccaccttg      1080
     cttgctgcca aggatgaaaa agtgttggca atacaacatc agcggccagc gtctcgattc      1140
     aaccaacaga gtcatcgaca agagcatcag cagcggcaaa atcatcatca gcaatacaac      1200
     agaaaggaca aaccgacaaa cccatgttgg ttatgcggag cacttcattg ggtgagcgaa      1260
     tgctcctaca aatcgcatac gtgtcgtgat tgtggtcgaa cgggtcatcg agagggccac      1320
     tgtaacaaaa caaatcgcca caaacatcag cgaaaatttc aaagaaagca tcaagccaac      1380
     ttgcgtgtcg tcacagtcaa cgtttgcagt gttcgtgggc gccgcaagta cgtaaagctg      1440
     gcgattaatg aaactcccgc tgagcttcag ctagatacgg gttccgatat ttcgattatc      1500
     aaccggcaat tgtggcagcg tatcggaaaa ccagcattga cacaacctgc agttcaagct      1560
     aaaaccgcta caggagcagg attgcagata tgtggagagt ttcaggccaa catcaagatc      1620
     ggaagcatta cgaagacggc tacaatccga gtagtgacgg tagacatatc gctactggga      1680
     gcagatttga tcgagctttt taatcttggt tcaatcccaa tggatagttt ttgtaacaag      1740
     atttgtagtg tagcagctat acccagtagc atacagcagc agtttccagc agtttttagt      1800
     ggaacggggc tatgcactaa ggctcaagtg cagcttcatt taaagcacga ctgtcgacca      1860
     gttttcagcc caaaaagacc agtagcatac gcgatgcaag aaacagtgga ccaggagcta      1920
     gatcggttag aaaaagcagg tattatcaca cctaccgact attcagaatg ggcagctcca      1980
     atagtggtag ttcgcaaagc aaatggcacc attcgtatct gtggcgacta ttccactgga      2040
     ctaaattcgg ctctaaaatc acacgaacat ccactaccag taccggaaga catattcgca      2100
     aaattagccc attgcgaata tttcagcaaa atcgatcttt cggacgcttt tctgcaagta      2160
     gaaatcgagg aacagtatcg gccactacta accatcaaca ctcatcgtgg cttgtattta      2220
     tataacagac tgccgcctgg agtgaaaata gcgcccgcag catttcaaca aattatggac      2280
     gctatgttgg ccggtttaaa gggagcttgc ggatacatgg atgatgtggt agttggaggc      2340
     agaacgagca aagagcacga cgataatttg tccagactac tgcatagaat acaagattat      2400
     gggttcacaa ttcgagagga aaaatgtgcc ttcaaaaata aaagcatcga gtatttggga      2460
     tacatcgtcg accgtaatgg attaaaacca aacccggcaa aaatagcagc aatcctcaac      2520
     cttcctgcac caacagacgt gagtggtgtt cgctcatttt tgggagcggt caactattat      2580
     ggaaagtttg tcccaaaaat gcgcgacctt cgttacccgc tggacaatct gttaaagaac      2640
     gacggcaaat tcacttggaa tcaacaatgc gaaaaggcat ttcgcacgtt caaagagatc      2700
     ctttcatcaa agctgcttct tacgcattac gatccggcag cagacatcat tgtcgcagcg      2760
     gatgcatcat cagtgggact tggggcaacg atcagccaca agtttccgga cggatcagtg      2820
     aaggtagttc aacatgcttc acgggcctta tcaaaagctg aacagaacta cagccaaata      2880
     gatcgtgaag gattagccat cgttttcgcc gtcacaaaat ttcacaagat gctgtacggc      2940
     cgacacttcc atctgcaaac cgatcaccgg cccctgcttc gtatttttgg atcgaaaaag      3000
     ggcattccag tctacacagc gaaccgcctg cagaggtttg ccttgacgtt acagttgtac      3060
     gacttttcaa tagagtacgt gcctactgga tcgtttggaa acgccgacgt cctgtctcga      3120
     ctgatcaggg actacgctaa gccggaatcg gactacatca tcgctagttt gagtttggag      3180
     gatgatttaa ggttcgtagc agtgcaagcc attaattcat ttcctctgac ctttgtagat      3240
     gtgcagaaag ctacacaaga agatacattg ttaaggaaac tcagtcatta tgtaacggac      3300
     ggatggcccc gtaacgcatc tttcgggtcg gagctggcac gattccatca tcggaaggaa      3360
     ggcttgtcta cggtagacgg ctgcattttg ttcggggaga gattggtgat ccctgaaaag      3420
     cttcgtgcca gatgtttgac gcaactccac cgagggcatc caggcattca acggatgaag      3480
     gcgctagcca gaagttacgt ttactggcca tccctcgata atgacgtaca ggatgttgtt      3540
     gcgacttgtc cagcctgtgc cgtcgcagca aagtctccac cacactcagc tccagcaccg      3600
     tggcccaaag ttagtacgcc ttggcaacgg gtccacatcg actacgcagg acctttaaac      3660
     ggcgagtatt tcttggtagt agtcgatgcg tttacgaaat ggcccgagat catcaaaacg      3720
     tccagcacca cggcagtagc aaccatagca atattgagat cgatttttgc acgtttcgga      3780
     gtgcctgtta ctatcatcag cgataacggc acacagtttg ttagctcaga atttaaggaa      3840
     ttttgtctaa agaacggcat aaatcatatt actacagcac ctttccaccc acagtccaat      3900
     ggccaagccg agcgttttgt cgacacgttt aaaagggcaa tcaagaaaat cacatacaat      3960
     ggactgggaa tacaggaggc cttagatatt ttccttcaaa catatcgctc aacaccaaac      4020
     gcacaattag aaaacagcac accagcaaag ctaatgtttg gaaggccaat acgtacatgc      4080
     ttagagttat tacatcccgt accaacccct ttgttagaaa gtcagcatgg aacaagaaga      4140
     ggatttcaaa acggtgctcc agtatatgct aagttgttta aacgtaatag ttgggaatgg      4200
     gtaccaggta ctgttgtagg aagcataggt agagtcatgt acaaaataag gactaaagaa      4260
     cggataattc gatcccatat taaccagttg cgcaagcgag caggagacaa tgagagggtt      4320
     acacatgatg cgaatccaaa ggttgcgtta gatttgctaa tggatacatg gaacatccct      4380
     ttaacatcta gcattcagta ttccgatcca agaagtccaa ccccaatact gaatccacca      4440
     gcagcgaccg ttatgccaaa catcccgacg gtattttcac cacgccgctc ttctaggcct      4500
     agaagagttc cgcgtaggtt tgatgcatat cgcctcaatt aaaaggggga ga              4552
//
ID   Gypsy-15_AnFu-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2828-2828 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 291 BP; 79 A; 62 C; 80 G; 69 T; 1 other;
     tgttatggtg caccttgtgt tgtcggaacc acgcactgac agccactcag ctatgacgag        60
     cgatcgtcat aagcaggacg tgtgcgtgag tgacgtaggg cactgaccga ggatcggctc       120
     agcgcgcaat cgagagcagt tgmaaatcag gagtcaaaga gaacggagat agggagcgtt       180
     aggtgtgcgt tgtgcgttgc gtgtacatgt tcgttaatta attaataaag ttttattata       240
     agtttgcgtc accccaaaaa cactcggtca acctcattca cagacgcaac a                291
//
ID   Gypsy-15_AnMe-I repbase;    DNA;    INV; 5467 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5467
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6827-6827 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1500..2363
FT                 /product="Gypsy-15_AnMe-I_1p"
FT                 /translation="MTLEREVERPSASTAQNPTSVPQVERIATKLPPFWDD
FT                 MPEIWFAQAEAEFEVSQITRERTRYSYLIGALPKQTLAKVLDVIKAPHEKT
FT                 PYTHLKEQVLSRLSTSEEARLSKLLYHVEMGDRSPSELYRHMVQLAGGSAD
FT                 ISATLIQKLWKSRLPKSIEVALIAVDSKDHDEQMKIADRLWECTNSGSVSA
FT                 IESKPNHFSHNYATDDIRQEISELRNMIRQMAVNSNHQRRGRQRNRSKSRN
FT                 RNNTPSQQGQRPLCWYHHKYGRNAKKCINPCNFHSTQGGNNLSLQKN"
FT   CDS           2225..5464
FT                 /product="Gypsy-15_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EQHTLTTGTTSTMLVPPQIWTERKKVYQSLQFSFNAG
FT                 REQFISSKKLICSEALTDSPRAILSSSRRLFINDEITLFTFLIDTGADISV
FT                 IPQNLVGIVAKPTDHILAAANGSTIATYGTKLIQVSLGLRRSFTHTFVIAA
FT                 VNRPIIGADFIHKHGLLVDLKERRLIDPTTNLVSKATIATVDTPTPKHFSV
FT                 ETNEFGEVLRQYPSLIEPPDYNTPVSHSVSHYIETKGSLPFAKPRRLEPKK
FT                 LKIAQAEFQHMLNLGICRPSSSPASSPLHMVPKADHDWRPCGDYRRLNAIT
FT                 TPDRYPIPHVQDFTMNLHGCKFFSKLDIVRAYHLIPIAEEDVHKTAITTPF
FT                 GLFEFLRMPFGLRNASQTFQRFMNSIFRDLEFVFVYIDDILIASPTKEMHI
FT                 EHLHKVFHRLASHDIKIKSSKCVLGVPSLDFLSHNISEKGITPSSSKVEVI
FT                 TKFPSPSSVKQLQRLVGMINYYHRFIPQVSDKLRPLYQLIAEHNGKKSKQN
FT                 FEWSEECEQAVLQVKHDLSNATMLAHPQSNANYSLTTDASNYAVGAVLQQH
FT                 LNGESQPLAFFSKTLTPTEQRYSTFDRELLAIFLGIKHFRHFLEGRDFTVL
FT                 TDHKPLTMALKSKAEKSPRQSRHLDFISQYTSDIQYIRGESNVVADALSRI
FT                 GGMDSITVLTDQTFSKEQKKDSHLKILLEKQNRKTKYKLTQISSNNVKLFI
FT                 ESSTGRQRLYVPLSLRKLTFQGIHNNSHPGIRATRKLTTDRYFWPSMNKDV
FT                 GDWTRACIGCQKAKITRHTHSPLETFDIPKGRFDHIHMDIVGPLPPSEDMC
FT                 YLLTIVDRFTRWPECYPMADMSAATIAKTFVDNYVSRFGCPETITTDRGRQ
FT                 FISKLFQELTKLLGAHHIKTTAYHPQSNGMVERFHRQLKGAIMASEDSMRW
FT                 MRRLPLVLLGIRLSFKDDIKGSPAEMVYGQSLRLPAEVSVPSSKNNSEDLP
FT                 DFIVNLKKAFQTLKPTATTQKTSITPYVPKNLNDCEQVFARVDKVKTGLQA
FT                 PYEGPFDVVRRFRKFFIINRKGKKRVYLNRSPETSIPLVKHTKDQAEWSGD
FT                 WRGAIPPLTLISNSSRDSVTGGG"
XX
SQ   Sequence 5467 BP; 1642 A; 1309 C; 1117 G; 1399 T; 0 other;
     agtggtgacc ccgacgagtg aaataaagta gcttgtgttt gtgcagtgaa gtgaaaaagc        60
     agttattttt tgtcttctct acgccaactg agtagacata cggcaaacgc taatcgtcgc       120
     gaaaaaaatc ctaatactcg ttagagtgga tacattgcga tagcggtgac gccacgtgta       180
     aaagccgtgc tcacgatata cacgagcaca cgctgataca gctaggacgg caggttaacg       240
     gccgcgctca cgtcacacgg gcacacgctg cttcagctga acggctctgc attcacgcga       300
     aattctccgg cagcagcaaa gaaagaacgt acgttagtac gtattcagcg tacgctacac       360
     acacgctgac aaaaaggtac atccagcgca cggattctgc acagcagatt cccccggcaa       420
     cggcatttac gaggtaaggt acgtaataag tgcacgctac gcacacttac acacctcaca       480
     acctcatgcg cacggatacg gtacctcatc ggaaatccgt cgacgagcgg cgaccacgag       540
     gtgacttacg tattacgtac taagtgcacg ctacgcacac ctgcacacca gtggcgcacg       600
     aggagagcta tcatcatcgc atcctccgtc ggcgacacca agtaccacga ggcaattgca       660
     ttgtcgtcgc acacacatat cgacacacct cggtacatgc gtcgcagtac gtccagtgca       720
     tcgcagttgt acgagagcga gacgtttaag gacaaggaag tgatctacag gtcgacgatc       780
     ggcactatat cctacaagtt cgacggcgcg ggagagcggt aagcagcagc tcacaacggc       840
     agggatcgtc acatcatcat cggaacggcg gtgttaccgc tgaagaccat ctcatcacca       900
     tcggaccggc ggtgttaccg ctaagatcgt cacatcatca ccggaacggc agtgttaccg       960
     ctgcgaacca tctcatcacc atcggaccgg cggtgttacc gctgaagacc gtcgcatcat      1020
     catcggaacg gcggtgtgac cactgaagac catcacagca tcttccagga gcggaacaac      1080
     cgctgaacac catcgctgca tcccccggca gcagggtaac cgttgaagca tacggttaag      1140
     ggaaacatct actcggtgat tcaataattg gcggtgagca cgttcctttt tttatcctgt      1200
     ttatattttt tttttctcac gcacttttcg atcttgagat ccaatcatat catctaatta      1260
     tcatattata agaatattaa gattaagata gcactaggat tagcagttag attttttatc      1320
     ttatttttta tagttcaatt tcattttctg gtatattttt tatccattat ccgctttcaa      1380
     tcattcattg cattatcgta tttcctttat atttttatta ctcgctaaat tttcattata      1440
     tttttttgcg ttaaattttt atcttaattc acatacacat aaaatttgaa ttgtataaca      1500
     tgacattaga acgggaggtt gagaggccta gtgccagcac ggcgcagaac cccacatcag      1560
     tgccacaggt ggagcgcatc gccaccaagc tacccccatt ctgggatgat atgcctgaaa      1620
     tttggtttgc tcaggcggag gctgagtttg aggtatctca aattacaagg gagcgcaccc      1680
     gatactcgta tcttataggc gctcttccta agcaaacctt agcgaaagtg ttggatgtta      1740
     tcaaggctcc acatgaaaaa acaccataca ctcatttgaa ggaacaggtt ttgagtcgcc      1800
     tttcaaccag tgaggaggcc cgactttcga aacttttata tcacgtggag atgggtgaca      1860
     ggtcaccatc cgaactttat cggcacatgg tgcagctcgc gggtggttcg gctgatatct      1920
     ctgctacact tatacaaaag ttgtggaaat cgagattacc aaaatccatt gaggtagcac      1980
     tcattgcagt cgattctaag gaccacgatg agcaaatgaa aatcgctgat agactctggg      2040
     aatgcaccaa ttcaggtagc gtttctgcaa ttgaatctaa gccaaatcat ttttcgcaca      2100
     attatgcgac tgacgatatt cgtcaagaaa tatcggagct gcgaaacatg attcgccaaa      2160
     tggctgtcaa ttctaatcat cagcggaggg gacgacagag aaatcgctca aaatcgcgaa      2220
     ataggaacaa cacaccctca caacagggac aacgtccact atgttggtac caccacaaat      2280
     atggacggaa cgcaaaaaag tgtatcaatc cttgcaattt tcattcaacg cagggaggga      2340
     acaatttatc tcttcaaaaa aactaatttg ctctgaagcg ttgacggata gcccacgagc      2400
     aattttaagc tcctcacgtc gtctcttcat caatgatgag attactttat tcacatttct      2460
     tatagatacc ggagctgaca tatccgtcat tccacaaaat ttggtaggca ttgtagccaa      2520
     accaactgac cacatattag ctgcagccaa cggtagtacc attgctacat atggcaccaa      2580
     gctaatacaa gtatctcttg gattgaggcg gtctttcact catactttcg ttatagcagc      2640
     ggtgaatcgt cccataatag gagctgactt tattcacaaa cacggtttgt tagttgatct      2700
     taaggaacgg cgcctaattg atccaaccac aaatcttgtg tcaaaagcta ctatagcgac      2760
     agtggacact cccacaccaa aacatttttc tgtggaaaca aatgagttcg gtgaagtctt      2820
     acgacaatac ccttcgttga tcgagccccc tgactacaac acaccagtca gtcattctgt      2880
     ttcacactac attgaaacaa aaggctctct accatttgct aagcctcgtc gtctggaacc      2940
     gaagaaactt aagattgccc aggcagagtt ccagcatatg ctgaacttag gtatttgccg      3000
     gccgtcttct tctccagctt cttcgccact gcacatggtt cccaaagcag atcatgactg      3060
     gcgaccatgt ggggattatc gacgactaaa cgccataact acacccgatc gatatcccat      3120
     accacacgtg caagatttca caatgaactt gcatgggtgc aaatttttct caaaattgga      3180
     cattgtacgg gcgtaccacc ttattcctat tgccgaggaa gatgtccaca aaactgctat      3240
     taccactcca ttcggattgt ttgagttcct aagaatgcca tttggtctta ggaacgcgag      3300
     ccaaactttc caaagattca tgaatagcat ttttagagat ctggaatttg tgtttgtcta      3360
     tattgacgac atccttatag ctagtccgac gaaagaaatg cacattgaac atttacataa      3420
     agtgttccat cggctggcta gtcatgacat aaaaataaag tcatctaaat gtgttcttgg      3480
     cgtaccatcg ttggatttcc ttagccacaa catttctgaa aaaggaataa ctccttcttc      3540
     ttctaaggta gaggtcatta ctaaatttcc ctctccgtca tccgttaaac aacttcagcg      3600
     attggtagga atgataaatt actaccatcg atttattcca caggtttccg acaagttgag      3660
     acccttgtat caactcatcg ctgagcacaa cggcaaaaag agtaaacaaa attttgaatg      3720
     gtcagaggaa tgtgaacaag cagtacttca agtaaaacat gacctatcaa atgcaaccat      3780
     gttagctcat ccacagagta atgccaacta ttctctcact accgacgctt ctaactatgc      3840
     agttggtgca gtactacaac aacatcttaa tggtgaaagt caaccattgg cgtttttctc      3900
     aaaaacacta acaccaaccg aacagagata ctcaaccttt gatagagaac tacttgccat      3960
     tttcctagga atcaaacatt ttcggcattt tctcgaaggg agagacttta cggtattaac      4020
     agaccacaaa cccctaacaa tggcgttaaa atccaaggct gaaaagtctc cgcgacaaag      4080
     tcgacatctc gacttcatct cccagtacac atctgatata cagtacattc ggggagagag      4140
     caatgtagta gcggacgcct tatctaggat tgggggcatg gattccataa cggtgttaac      4200
     ggatcaaact ttctcaaaag agcaaaagaa agattcacat ttaaaaatat tgctggaaaa      4260
     acagaacaga aaaactaaat ataaactgac acaaatatct tcaaacaatg ttaagctatt      4320
     tattgagtct tcgacaggaa gacaacgctt gtatgttccc ttgtctttgc gcaagcttac      4380
     attccaaggg atccacaata actcacatcc tggcattcgg gctactagaa agcttacaac      4440
     cgatcgttat ttttggcctt ccatgaacaa ggacgtggga gattggacac gtgcctgtat      4500
     tggatgccaa aaggccaaaa taacacgcca tactcactcg ccattggaaa ctttcgacat      4560
     tccaaaaggc aggtttgacc acatccacat ggacatcgtt ggtcctctac ctccttcgga      4620
     agacatgtgt tacctactca caatagtaga tagatttaca agatggccag agtgctatcc      4680
     aatggcagat atgtcagcag ctaccatcgc aaaaacattt gtcgacaatt atgtctcgcg      4740
     ttttggatgc cctgaaacca tcacaactga ccgtggaaga caatttatct ctaaactgtt      4800
     tcaggagcta accaagctcc ttggggccca tcacataaag accacagcat accacccaca      4860
     atcaaatggg atggtcgaaa gatttcaccg acaactaaaa ggtgctatca tggcaagtga      4920
     agactccatg cgatggatga gacgattacc attggtcttg ttaggtatta ggttgtcttt      4980
     taaagacgac attaagggat caccagcaga gatggtatac ggccagagcc ttaggctccc      5040
     agctgaagta tctgtaccat cctctaaaaa caactcagaa gatctccctg actttatcgt      5100
     caatctgaaa aaggcatttc aaactttgaa gcctacagcc actacacaaa aaacttcgat      5160
     cactccgtat gttcctaaaa atctaaacga ttgcgaacaa gtttttgcac gagtggacaa      5220
     agtaaaaact ggactgcaag ctccttacga aggaccattc gacgtagttc ggcgtttcag      5280
     aaaatttttc ataatcaata ggaaaggaaa aaaacgagtc tatctcaata gatcgcctga      5340
     aaccagcata ccgctcgtca agcataccaa agatcaggca gagtggagcg gtgattggag      5400
     aggtgcgatt ccgcctttaa cgctcatatc aaattcatct cgtgactccg tcactggtgg      5460
     ggggttc                                                                5467
//
ID   Gypsy-15_AnMe-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-292
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6852-6852 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 292 BP; 75 A; 73 C; 71 G; 73 T; 0 other;
     tgtagtgacc gttacggctt tagaccggtt ctaaccgttc gattcgcgtt agaccagttc        60
     tagcgatctt cgcctagcag gcaacaaatt atagcaggta cgccacctgt cgctgtgcac       120
     ctcaaccttc cactgaatca agttaggcca tggttgccaa ctgcgttggc aaccggagtg       180
     agaattaggg aactaaggac atgcggccct tagctcggtc tcttttgctc gctgaccgtt       240
     gtagagacag gacgcaataa aagtaattga taactcacac acgagagtta ta               292
//
ID   Gypsy-15_AnSt-I repbase;    DNA;    INV; 5855 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5855
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 798-798 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5855 BP; 2274 A; 1046 C; 970 G; 1564 T; 1 other;
     tggcgatcat gccaggagta agtgtcgtgc gtgccaaaga aaattaaaag tgcagtgtgt        60
     tcaccgaaac cgaagaccag ggcaacggaa aaagaaaaaa aaaaaaaagg gacacaataa       120
     atcgaataac atcgatatgc tgatagcaat cttaatcagc agattcacag cactttcacg       180
     ctaaaaaaaa aaaaaaaaaa aaaaaaaaaa aagaaggctg taacgcacag aacacgctat       240
     aacaccaagg caaaaacacg tgacaatagc gtcaaaatcc accatcgcgc tgagtgcgct       300
     gaacgaccgc tgacacccag gtccatcacg ccgagcgatg gagtccagct gctgagaaat       360
     ccaaacgaca aaacccagca tccgagaagg cgaattcagc atccgtgagc agcgtagcat       420
     cgagcatcga gcatcgagac accgtgccgc accgtaccgc accgaagtat tgaacaagag       480
     acaccggcac acatcgagca ccgccatcgc gctgtttgga ccacgcggag cgagcgagcg       540
     ccaccacata taaaaaaaaa ataaggtacg tgaatccacc acattattgc acaaaaaaaa       600
     aaaaaaagaa gttattgtaa aagagctaga taggttttat acattttatt gctatttttt       660
     ttttgcgtta tttattgaat tcatatcgtg tcagaaaaca aaactgtgcc gtgctaagta       720
     aaaaaaaaag gagaaaaacc atagtaccag tgaaaaagtt cttgccttgt accagttttg       780
     ttgatagtat gttgaaacct cgaggtgtct aaaaaaaaaa aaaaaaaatt gaatgtaacc       840
     attcgaccgt gatgggtcta atagtttctt tgtttcttaa cttccccttt tgcttttgag       900
     aaaaaaaaaa acacagggtg ttmaaaaaaa aaaaaatata tatataaaaa aaaatatata       960
     tatatatata tatatatata tatatatata tatatatata tattataatt aaaaattaat      1020
     tatctgaatt tttttatcac caagctaact atgctaacta aaaaaaaata taaaggcatt      1080
     attattatct ctaaagcaaa aatatcattc atttataaat catattcttt atcgaaatta      1140
     tttaccacat gttcattgaa aaaaaaaaaa aaactgaaaa tggtgtctga atagctacta      1200
     caattttctt ttcctttaac gttttgtcgg ctcatactca tttatcaaat ttttatgtta      1260
     ttatttttca ctcaatgaaa aaatctgcta taaccactag taccccagca agtaaaacaa      1320
     ctaggagcaa aactatccat acctatgcac ataaatccag cacgaaaaaa actgttagca      1380
     ctgaaacaac aaagccatct tgcagtaagc ctactaaaat gacagccaaa ttggatataa      1440
     atctagcact aaaactcgtc aagccttttg atggttcaaa cacactacta aacgcataca      1500
     tcgaaagtgt tgaactcctg ttagactatg cagaaggagt accagaagtg gatattataa      1560
     aatttatgaa aaccactttg attggcattg ctcatggagt tatagatact gcatgtacaa      1620
     taaaagaagc tttcagtctt cttcgtactc gttttagcgt gcatttgacg ccgctagctg      1680
     tagaaaaaga gctatctgct ttaaaccaag gttcaaaaac tatttctgag tttgggaatg      1740
     agctagagaa aatggctgcc aaattatccg cagctcatgt ggctgtagga acatttgcaa      1800
     cagaattttc cgcacacagc attgtaaacc cgatagtagt gcgtgcattt atacaaggtt      1860
     taaatgaagc taatacaaga tttttcttgc aagcgcgaaa cccgctaacg cttagcaaag      1920
     ccatatcaga tgctctggag tgtgaaccaa tcgaagagag atcaactgcc atgtggtatc      1980
     aatcccctat tcaacctcga ctttacacga gacgttcaca caactcgtat tacccaagac      2040
     aatcatacaa ctcatcatac agaggcagaa catttcagag atattctggt aatcaaggtt      2100
     atgaaaatca aactcgaaat tttgctacca ataaccaacg tggatacagg aacagaaatt      2160
     attccaacac tcaatttcag caacgaacgc caaatgcaac acgcaccggg cgaaacaata      2220
     atgacaatag agtgcattta ggaaacacca atcttttgga ggaatgtaac gatacggatc      2280
     aaaactcaag tgaggaacaa aatgaaatag ttaatttatt tcgttaaatt acaatttgat      2340
     acaggcgtta aggccaaatt taatttgttc gggatttatc gtgatcttgt cattgatact      2400
     ggtgctacct gttgtgtatt gaatatcaac tatgttccca agcaagtcgt cttagataaa      2460
     actaccgttt taaatatttg tggaatcaac ggttcagtta aatcattagg atgcattgaa      2520
     accaatattt atgcgaattc gcaaaatttt ccaatcttat ttcatgtcgt aaatacactt      2580
     ccatcccaca ttgtagggtt attaggaacc aactttttga gaaaacataa agctaatcta      2640
     aattttgaga atatgagttt gacttgtaat gtcaaccata aacacacttg tttaacaatc      2700
     cctgctagaa cagaacttgt tacctacgta gatactacaa acactgatac ttgtgttata      2760
     ctcaatgaaa caatccaacc taatgtgcac atagcaaaca cgatagctaa tccacaaaat      2820
     ggtaaattgc caatacgcat tgcgaatttt caaaataaat caataactat agaaaaactg      2880
     aaaccaacca ttaaacctgc gtcagatttt aacattttag aattcaaaac tcctcaacat      2940
     gatagtgatc atgctaacca actgttgaaa gaactggatt tatcacattt acacgaaaac      3000
     gataaagaaa ttattgccaa aatttgcatt aaatacaatg acatattctg tttgcaaaat      3060
     gataaattga gtactactaa agtttatgaa gcttctttaa aaattaaaaa taatacgatg      3120
     cctatatatt caaaacctta tagacttcct tattctcaaa aagaagaagt tgataatcag      3180
     attaaaaaaa tgttaaaaaa caaaactata gaagcgacac agtctgaatg gaacagtcca      3240
     atattattgg ttcccaaaaa gactagtact gatacaaaga aatggagact tgtaatcgat      3300
     tatcgcaaag taaacactgt actgcaggat gataaatttc ctttaccgaa tatcgatgaa      3360
     gtgatagata ccttatctgg gtcaaaatat ttctcgcatt tagatttgtc tcaaggttac      3420
     tatcagtgca agttaagcaa aaaagatcgg ccaattaccg cctttaccac gccatctggt      3480
     caataccaga tgacaagatt gccaatggga cttaaaataa gcccatctac attctcaaga      3540
     atgatgactg tggcaatgtc aggcttaaac gcagaacaat gtctcatata tttagacgat      3600
     attgtcgttt ttggtaaaaa tatgcaggaa cataataaaa atttgttgga tgtattcgag      3660
     cgattgagac aagtgaatct caaattaaac ccggaaaagt gtcatttttt gaagaaagag      3720
     ttggtttatc taggtcatta tatttccgca gaagggataa aacccgatcc acaaaaactt      3780
     aaatgcatca atgattggca accccctaaa tcttcagatg aagtgaaacg ttttgtagct      3840
     tttgctaatt attatagaaa gcacataaag aattttgcct caatatgcat gccgttaaac      3900
     catttaacac gaaaaggagt tccatttgaa tggacaccta cttgccaagc agcatttgat      3960
     caactgaaaa ataattttgt gaaccctcca gtcttagatt ttcccgattt tagcaaaaaa      4020
     aaatactttt gttttgcata cagatgcctc aaatagtgct attggtgcag tgcttagtaa      4080
     tcaaaacgga aagccaattt cttttgccag tagagctctt aacaaaggcg agctaaatta      4140
     tgcaaccatt gaaaaagagt tgttagccat agtgtgggcc attaaacatt atcgtccata      4200
     tctttatggt aggcatttca atatttttac agatcataga cctttagtct atttgtttac      4260
     tatgaataat ccttcgagcc gtttaactaa atttagactt gcgctagaag agtacaattt      4320
     tactgtgtgc tataaaaaag gtactgaaaa cgtagtagcc gacaccttat ctagattacc      4380
     attatctgat attaaagcca taaatataca agaaaaagtt ctaataacca caagatctaa      4440
     aactaaaact gatagcaacg atatttgcca aaatgatagt aataattcag caatatctaa      4500
     agtaaactat attgagctgc agttttgtcg taatgcaaat gatcttgtta ttctaaaaaa      4560
     taaaataatt ttacccaaaa ccaatactat cgtttactta cgaggaatgt tagtaaggat      4620
     aaaagccttt atcaaatcat ttaaaaataa aacatacttg gtgataaaga aacaagatga      4680
     agcttcaaag caattcatgg aacagctaaa aaccctcaat gagaagggaa tgccagagat      4740
     aatagtactc aatgaaaatg taaaagtatt aggggatcat gaaagagcaa agaaacttat      4800
     tattatgaat gattttcaca ccttaccgac cgcaggacac gcaggttttc atcgtactgt      4860
     taacacaatt aaacagagat atacatggcc aggaatagat aaggatgtta aagaaatgat      4920
     tgccaagtgt aaacaatgcc aaatgaacaa accaattaaa ccaccaaaaa taccacttaa      4980
     aataacagat acagcaaaaa cgagtatgga aaagatattt atagatcttg ttggcccgtt      5040
     agtgaactca catggctatg aatacattct aacaacacaa tgcgatttaa ctaagtttgt      5100
     gacagccacg ccaatagaaa acaaaagagc tgaaacagta gcgaaaacat ttgtagagaa      5160
     agtaatacta aaatacggag tgccagaaac tatttgtaca gacagaggca cagaatttct      5220
     ttcatcattg tttaatgaga tatgtaaact tttgaaaata gaaaaactaa aatccactgc      5280
     ttatcatcac gaaacagtag gagcgcttga aaacacgcat aaacagttag gcaatttcct      5340
     tagaatttac agcgataaga aagcgttaga ttggcatcaa tgggtaaact tttacgagtt      5400
     tgcttataat aataccgtac acacagctac aggttatacc ccgttctacc ttatgtatgg      5460
     aaggcaagca aatgtaccat ctaacgtcat aaacgaaaaa gtgaatagag cgcaatacga      5520
     tctagacaat tacgcaactg tactaggttt aaaactgaag attgctcacg atgaagtaag      5580
     aaaacgcctg atacaaaata aggctaagag caaagaatat tacgatgaga aaacgaaaca      5640
     caaaatattc caaccaggca atcaggtatt aatcagagaa gagaatgtaa aaaaattaga      5700
     aacaccctac agcggcccat atacaatatt acaggataat ggcgaaaatg tagtaattga      5760
     agataacaca aaaacagata cagttcataa gaataggata aaagaatggc atgtataaaa      5820
     aaaaaaaaaa aaaaaaaaaa aaaaatgatt gggcg                                 5855
//
ID   Gypsy-15_AnSt-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 811-811 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 194 BP; 52 A; 31 C; 50 G; 61 T; 0 other;
     tgttgtggta ctcgactgta gtagagttat atcgataaga acgttaagtg tcgttaagtt        60
     agggagttcc acacggggaa ctcacctagg gatatataag tgtgcacgcg gtgggttcca       120
     gtctcttttt ctggtgtgct ttcgtaaaag caagaagtta gtagaataaa cttccttgtg       180
     cgtacattat aaca                                                         194
//
ID   Gypsy-15_BTa-I repbase;    DNA;    INV; 9067 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-9067
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 679-679 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~92% identical to each other. both termini are
CC   uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(370..1293,1203..2234)
FT                 /product="Gypsy-15_BTa-I_1p"
FT                 /translation="MTSTNSSNGSGSSKQHDKLIMLMLEKLPDYSVNSHET
FT                 IEIFCKEFEEIAELAKWSDSMKFHYCKTKLRSEALEFAKQHPELNIEYKCL
FT                 KDLLIKRYEKEKDETGEKIKFFSRVQFVSESVREYATALTKLGYKSKETGA
FT                 DEAEEAMLKKQLSVQLKTIFPKGLSDDIRRFVIVRRPKTFEDAVKETTFEE
FT                 DQIMLRTFTFCMKQGHLESSCRLKNNAITSNSEHRLLSHSRQLQESYRIPK
FT                 VPQKENVIASTENDRDRQPSRQDFNRGYSREPNERSSSSHRPAERRSSNSY
FT                 QRGQNFQEAPPGRVGHFQPQTCRAKVIQFLSKGSKFSRSPTRASGALTLQS
FT                 HDNHSKSACVIMLEKDNLGYIAEFKVNHMEMPLRLLIDTGSMVSILKGKNS
FT                 CHVTHEQFINPNKRVYLTNISQSQVLTAGTVHVPLSYGNHMFQHEFHVLDC
FT                 DTVDSVSGIPGIDFCDKYKVTLVLPENRMLMSLSDSYANILKFSSGIIRTV
FT                 PCESHSLENNPPSSTYTVQKTMPRIRQENSEISAFSRDGKNQRNFSPKISP
FT                 GRRHFTESSRGNRQFQNFSQKTSFSTEKPEFSKHFNESKQEHNLLFVTSPI
FT                 NLSPNSVTQVKFKHNFELGLNYTFSPYQISRNGLIHSIHTIIFVDQETVKI
FT                 LIF"
FT   CDS           join(2275..3063,3057..3869,3873..6350,6331..6786)
FT                 /product="Gypsy-15_BTa-I_2p"
FT                 /translation="MVGKLRKSIYPQNWYPTGEMGESTKSPMEQKKSVVVT
FT                 RNFHNDYRRNDRFKQDSRFKHCENIPKENYRKFEPGNARNHGNFSEPQERY
FT                 LQYKSHVSKKPKSSQFRHQNNERKKTSNNNFAYKNNRAQRTNHQRPRVESS
FT                 RSQNNKLASDQKSNFEYLTTIKLAKDAVLPPRAEFICDGSIKDKHKVQIGK
FT                 SYYFELVPFIKDNVLAAKALITVLPNSQIMVKVINVNNRELALQKGTLLGH
FT                 LDPIETLSVNCHSISSKPCNRFSLLNYKESPPKQKVNVDLSHLPPEKRKPL
FT                 QNLLDEYSDVFVLDPNEKVLTTPLLEFEIPTGDVKPIYTRQYRLPLAQHRQ
FT                 LKDMAEKMVERDILEKNIPSPWNSPVIVAMKKTKDEYGRPKIRFISDFRKI
FT                 NQVIDAPSFPLPLLEEQLDSLAGATNFSTLDLSDAYYSLAIKEEDRPKTSF
FT                 VLNNTTYRYKKVAMGIKNSASCMARLAQLAFNDMIGTDIYVYMDDIILGSQ
FT                 GDYEEHLKALERFCIKLRQAKLKVNPKKCVFFQERIDFGHIISAKGLEPNN
FT                 LKIKAIADMRYPTKLKELQSSLGMTSFYRKFIKDYAKIAHPLTHLLKKDVP
FT                 FEFGPAQRDAFNALKHSLTNYPVLKLPEADKLFVLTVDASHYSCGAILEQY
FT                 DDDGNSRPVAYASRAFNKVEQQRSTIEREFESILFGVSHFKIYLWTVFFIL
FT                 RSDHLPLRGIASIPFKNDRLARQVLYLQQFNFECTHIPGKRIPHVDALSRL
FT                 PTNIHRIANKNALFPTFSRNQIRSLQMNNSFCRDIVRELKSTGNFDNKDCQ
FT                 YFLDDDKLLYKIRKSPENEDRLVVPPELIPRVLEICHDKYPCSHAGFNRTL
FT                 ELVQRNFYWPNMHTDVKNYVASCEKCTMGKKSKFERPAPLQAFDTPKYPFY
FT                 RLSTDIIGPLQRTGKGHLYCLLFTDHHSKFLIGFALKNQSADTVAKCLAKV
FT                 VTTYGAPEDLLSDKGKNYTSKIIEELCKFLKINKIQTTAFNPQCNGMSERA
FT                 NQLIKSLMTCCLDSGDRNWNETLPHVISAINNTQNSVTKYAPSYLFFGRHV
FT                 NLPFDDFYKPRRMTYNIDSNYAVETEQRMKFAYQTAQDRLQKTAEYRKNYY
FT                 DRKTRNLEFFVGQEVTLFSPALQKGRARKFNPKYSGRYVIIGKLGKVNFKI
FT                 KDLDHPRKTQIVHANLLEKLVKRDPRLSYKERDTGWVTNINADWLRKYRTG
FT                 QLDAEKKDNSSNSEVPVENLIDAPSTSSTPHPPPSSQTSLMESAESRGSDK
FT                 NPLDISISDEENKKLPEIVSPSVSDYSSDELRTSTPKKLIKVHKSDFKSSE
FT                 STISSISKNSSSSISENSSCSISENFNSSYKKKLRKRKPVLVKKTKKNLKK
FT                 LRKTKGTKKRKISKTSESPQFLEDSYLASEYPSSKESYKSLENSITLNKKL
FT                 FSSSESSERSESSRTPSPPQNFRAPLPPSPQPTRRVTRSTKNSQQTTRQSS
FT                 EENEKLPIGFDKLIKYPVPRKSILKKKGQRTQFIFETPYQLRHTPDR"
XX
SQ   Sequence 9067 BP; 3135 A; 1768 C; 1564 G; 2600 T; 0 other;
     ttctcccgtt gagaagaatc aggagaactt tcattctcca actaaaaaat tcttccacaa        60
     gccagtgcgg tggctttaga attttttttt tctctccctg atgtcaacca ccggaagcct       120
     aaggattttt caaccaacca ctggaaccaa aggagcctcc attgacgtct ggaaaaagtt       180
     cactgggtga gtcgtgaata aaaatgtaaa tttcattggt attatgtgtg tgaatccagg       240
     gatctctaag tgctcccccg cccccattga ccttaacaaa atattattat tttagtgaca       300
     aattagtgca gttttccagt gtcatcactt atttttctgt gtttttactg cattataatt       360
     tcattaaaaa tgacatcgac aaatagtagt aacgggtctg gctcgtcaaa acaacatgac       420
     aaactcataa tgttaatgct agaaaaatta cccgattatt cagtaaattc tcacgaaact       480
     attgaaatat tttgtaaaga atttgaggaa atagcagaac tggccaaatg gtccgattct       540
     atgaaatttc attattgtaa aactaaatta cgttcagagg ctttagaatt cgctaagcaa       600
     catcccgaat taaatatcga atataagtgt ttaaaagact tattaattaa gagatatgag       660
     aaagaaaagg atgaaacggg tgaaaaaatt aaatttttta gtagagttca attcgtaagt       720
     gaatcagtca gagaatatgc aaccgctttg acaaaattag gctacaagag taaggaaaca       780
     ggagctgacg aggctgagga ggcaatgttg aaaaaacaat tatctgtaca gttaaaaact       840
     atttttccta aaggtttaag tgatgacata agacgttttg tcatagtgcg ccgtcccaaa       900
     acttttgagg atgctgttaa agaaactact ttcgaagaag accaaattat gttgcgaaca       960
     tttacttttt gtatgaaaca aggtcatcta gaaagctcgt gccgtttgaa aaataatgca      1020
     attacaagta attcagaaca tcgcctccta agccacagca gacaattaca ggaatcttat      1080
     agaataccaa aagttccaca aaaagaaaat gtaatcgcgt cgactgaaaa tgacagagat      1140
     aggcaaccct cacgacaaga ctttaatagg ggttactcaa gggaacctaa cgaacgcagt      1200
     agttccagcc acagacctgc cgagcgaagg tcatccaatt cttatcaaag gggtcaaaat      1260
     tttcaagaag ccccaccagg gcgagtgggg cattaacttt gcaatcgcat gataatcatt      1320
     caaagtcagc ttgtgtaata atgcttgaaa aggataattt gggctacata gcagaattca      1380
     aggtaaacca tatggaaatg cctttaaggt tattaattga tacaggtagt atggtaagca      1440
     ttttgaaagg aaaaaattcg tgtcacgtga cgcacgaaca atttatcaat ccgaataagc      1500
     gcgtttattt aacgaatatt agtcaatcac aggttctcac tgctggaaca gtgcatgtgc      1560
     cactttctta tggaaaccat atgtttcaac atgaatttca tgttctcgat tgtgataccg      1620
     ttgattcagt ctctggaatt ccgggcattg atttctgtga caagtataaa gtaactctag      1680
     tccttccaga aaatcgcatg ctcatgtctc ttagcgactc atatgcaaat attttaaaat      1740
     tcagctcagg cataataaga acagtccctt gtgagagcca cagtttggaa aataaccctc      1800
     cctcaagtac atacacagtt cagaaaacaa tgccacgaat ccgacaagaa aattcagaaa      1860
     tttcagcatt ttcccgagac gggaaaaatc agagaaattt ttcaccgaaa atttccccgg      1920
     gaagaagaca tttcactgag tcttcacgcg gaaatcgaca atttcagaat ttttcacaga      1980
     aaaccagttt ttccacggaa aaaccggaat tttctaaaca ttttaatgaa agtaaacagg      2040
     aacacaactt actttttgtg acttctccaa taaatttaag ccctaattca gtaactcaag      2100
     taaaatttaa gcataacttt gaacttggtt taaattatac attttctcct tatcaaattt      2160
     ccaggaatgg tttaattcat tcaattcata ctatcatttt tgttgaccaa gaaacagtaa      2220
     aaattctaat tttttaatga atccaatgaa tcagcttgta taaaatcagg ggccatggta      2280
     ggaaaattaa ggaaatccat ttatccacaa aattggtatc ctaccggaga aatgggcgaa      2340
     tccacgaaat cgccaatgga gcagaaaaag tcagttgttg ttaccagaaa ttttcataat      2400
     gattaccgta gaaatgacag attcaagcag gattctaggt ttaaacattg cgagaatatt      2460
     ccgaaggaaa attaccgcaa gtttgagcca ggaaatgcta gaaatcatgg aaatttttca      2520
     gagcctcagg aacgttatct tcaatataag agtcacgtca gtaaaaaacc aaaatcgagt      2580
     caatttcgtc accagaataa tgagcggaaa aaaaccagta acaataactt tgcgtacaaa      2640
     aataaccgag cacagcgcac gaatcatcag cgcccgcggg tagaaagctc acgctcacag      2700
     aataacaaat tagcgtccga tcaaaaatct aattttgagt acttgactac gatcaaatta      2760
     gccaaagatg cagtgttgcc gcctagagca gaatttattt gtgacggctc tattaaagat      2820
     aaacataaag ttcaaattgg aaaatcttat tattttgaac ttgtgccttt tattaaagat      2880
     aacgttctgg ctgcaaaagc tctaattaca gtattgccga attctcaaat aatggtaaag      2940
     gtaattaacg ttaacaacag ggagttagct ttgcaaaaag gcaccctttt aggacatctc      3000
     gatcccattg aaactctttc agtaaattgt catagtattt catcaaaacc ttgtaatcgc      3060
     ttttaaatta taaggaaagt ccaccaaaac aaaaagtaaa tgtagattta tcacatctcc      3120
     ctcccgaaaa aagaaaacct ttgcaaaatt tacttgacga atatagtgat gtttttgtgt      3180
     tagatccgaa tgaaaaagtc ctaactactc cgttgctaga gtttgaaatt ccaacgggtg      3240
     atgtcaaacc catttatact agacaatata ggctcccctt agcacaacat aggcaattaa      3300
     aagatatggc agaaaaaatg gtagaaaggg acattctaga gaaaaacatc cccagtccct      3360
     ggaactcccc agtaatagtt gcaatgaaaa aaactaaaga tgaatatggt aggcccaaaa      3420
     ttagattcat aagtgacttt aggaaaatta accaagtaat tgatgcaccc tccttccccc      3480
     tacccctcct tgaagaacaa ctggatagtc ttgcgggagc aactaatttt tctactttag      3540
     acttatcaga tgcttattat agtcttgcaa taaaggaaga agataggcca aaaacgtcgt      3600
     ttgtcctcaa caacacgact tatagatata aaaaagtggc aatgggaata aaaaatagcg      3660
     cttcttgcat ggccaggtta gctcaactgg cctttaatga tatgattggg accgacattt      3720
     atgtttacat ggatgatatt attctgggat cccaagggga ctacgaagaa catttaaaag      3780
     ctttggaaag gttttgcata aaacttagac aggcaaaatt aaaggtaaat cccaaaaaat      3840
     gcgtattttt tcaggaaaga attgactttt gaggtcatat tattagtgcc aagggtcttg      3900
     aacccaataa tttgaaaatt aaagcaattg cagacatgag gtaccccaca aagctcaagg      3960
     agctacaatc ttctctagga atgacgtcat tttacaggaa attcataaag gattatgcga      4020
     aaatagcgca tcctttgacc catttactca aaaaggatgt gccgtttgaa tttggtcctg      4080
     cacaacgcga tgcatttaac gccctaaaac atagtttaac aaattaccct gtgcttaagc      4140
     ttccggaagc tgataaatta tttgtgttaa cggttgacgc cagtcattat agttgtggcg      4200
     caattctgga acagtatgat gacgacggca attcgagacc tgtggcatac gccagcagag      4260
     ccttcaataa ggtggaacaa caaaggtcaa ccatagaaag ggaatttgaa agcatattat      4320
     tcggggtttc acattttaaa atctatctat ggaccgtgtt tttcatttta cgatctgatc      4380
     acttgccttt gaggggaatc gcctcaattc cttttaaaaa tgatagatta gcgagacaag      4440
     tgctctactt gcaacaattt aattttgaat gtacacatat accaggtaaa cgcattccgc      4500
     atgttgatgc tcttagtaga ttgccaacca atattcacag gattgcaaac aaaaatgcat      4560
     tgttcccaac cttctctaga aatcaaattc gatcgcttca aatgaacaac tctttttgca      4620
     gagatatagt ccgtgaatta aaatcaacag gaaattttga caacaaagat tgccaatatt      4680
     tcctggatga tgacaaatta ctctacaaaa ttagaaaatc accggaaaat gaagacagac      4740
     tagtagtacc gccggaactg atccctcgag ttttggaaat ttgccatgat aaatacccat      4800
     gttcacatgc aggctttaat agaactcttg agttagttca gcgcaatttc tattggccaa      4860
     acatgcatac tgatgtaaag aattatgttg cgagttgtga gaaatgtaca atgggcaaaa      4920
     aatcaaaatt cgagagacca gcgccattgc aagcttttga cactccgaaa tatccatttt      4980
     acagacttag cactgacatt attggccctt tgcaaaggac gggcaaaggc cacctttact      5040
     gcttactttt tacagaccat cattcgaagt tcttaatagg ttttgcccta aaaaatcaat      5100
     cggctgacac ggttgccaaa tgtctagcta aagtagtaac cacttatggg gctcccgaag      5160
     atttactctc agataaagga aaaaattaca cgagtaaaat tattgaggaa ttatgtaaat      5220
     ttttgaaaat taataaaatt caaactactg cttttaatcc acagtgcaat ggtatgagtg      5280
     aaagagcgaa tcaactcatt aaaagcttga tgacgtgctg cttagatagt ggggacagaa      5340
     attggaatga aacacttcca cacgtcatta gtgcaattaa taacactcaa aacagcgtaa      5400
     ctaaatatgc acctagctat cttttctttg gcaggcatgt caatttgccg tttgatgact      5460
     tttacaaacc acgtagaatg acctacaaca ttgactccaa ctatgctgta gaaactgagc      5520
     aacgaatgaa attcgcttac cagacagcac aagacaggtt acagaaaact gccgaatata      5580
     ggaaaaatta ttatgatagg aaaactagaa atctcgaatt tttcgttgga caggaagtaa      5640
     ccctcttttc accagcgctc caaaaaggaa gagcccgaaa atttaatcca aaatactctg      5700
     gtcgttacgt cattatcggt aaactcggta aagttaactt taaaattaaa gacttagatc      5760
     accctcgaaa aactcaaata gttcacgcga atttgttgga aaaattggta aaaagggatc      5820
     caagactgag ttacaaagaa cgagacacgg gatgggtgac aaatattaac gcagattggc      5880
     ttagaaaata tcggacaggt caacttgacg cggaaaagaa ggataattca tcaaactccg      5940
     aagtccctgt tgagaattta attgatgctc cttccacctc ctccaccccc catcctcctc      6000
     cctcatccca aacatccctg atggagagcg cagagtcccg aggaagcgat aaaaatcctt      6060
     tagatattag catttcggac gaagaaaata aaaaattacc agaaattgta tcaccttcag      6120
     tttcagatta ttcgtcagat gaattaagga ctagtactcc caagaaatta attaaagttc      6180
     acaagtcaga ctttaaatcg tcagagtcaa caatttctag catttcgaaa aattccagtt      6240
     ccagcatttc ggaaaattcc agctgtagca tttcggaaaa tttcaattct agttacaaga      6300
     aaaaactaag aaaaaggaaa cccgttctag ttaaaaaaac taagaaaaac taaagggaca      6360
     aaaaagagga aaattagtaa aacatcagaa tcccctcaat ttctagaaga cagttactta      6420
     gcgtccgaat atccctccag taaagaatca tataaatctt tagaaaacag tattacactt      6480
     aacaaaaaat tattttcaag tagcgaaagt tcagagagaa gtgagagtag ccgcaccccc      6540
     tctcctcccc agaacttccg cgctcccctt cctccttctc cacaacccac cagaagagtt      6600
     acgcgaagta cgaaaaattc tcaacaaaca acgcgacaat cttctgaaga aaatgaaaaa      6660
     ttaccaattg gtttcgataa attaatcaaa tatccggtcc ctagaaagtc aattttaaaa      6720
     aagaaaggcc aaaggaccca attcattttt gaaactccct accaattaag gcatacgcca      6780
     gatagatgaa gtagatttgc gcttacaaaa ctgtttaaaa aacaaaaatc aaaaattcca      6840
     gacccaccat aggcaaaaga ctcaaacagc gatgatatac ttgcctcatt ttaaactgaa      6900
     cttttagatt ttcatgaaga ttagaatttt tataaataaa aaagtgcatc gtttgaatta      6960
     ttgccttttt agtctcaaat aatcattgcc aattggtgga tttttctaca catggaaaac      7020
     accagccact tcgggaaata taagttttcc ataccttgtc ttataatttt tgtaaaaatt      7080
     caatttatat tgccttttgt cgtccttatt tgaaacgttt gctactcttt aatgactttc      7140
     acttataatg atattgcatt cttttcacga agctgaagaa tagcattttg attaaaattg      7200
     gacatttctt tcctttctca ttctctagaa actaaaaatg ggatgaattg atttaagtaa      7260
     ttttttactc ataatctcaa aaacttgagc ttttactttc atttgccaat aaatattttg      7320
     ctagtccttg ccattatgta ttagttgatc catctcatta tgcgtcataa tcacagaact      7380
     tacttaaatt acttagtgca cgaaaaaata tctctgggcc cagaggcata aaacacgcag      7440
     gcttacctta attggtcggt acacgtgaat taagtagtat tttctttaat tgggcgatac      7500
     acttatcaat taacacctaa aaacacaact aagtatgttc tgttgaaaag gtcacagctt      7560
     gatctaatat ttagagggac agagaaatta acgaatattt ttggtatact caatttgaaa      7620
     aaccatttat gaatgttttt aacgacttta gccacaaagg atgtattaca cgcattagca      7680
     gtattcagcc ggcgtatttt tatgaagttc acatgagccg ttttactgtt ggcactgctc      7740
     atattatcgt tgccagcatg aaggttcatc aatgccactg tcaaaaacct gagccctttt      7800
     tcacacacat aaatgtatgt tttagaattt ctagatctaa gcatttggat ttctttcaca      7860
     ttttattcga agaaatttat agaaaattta atttgttctt tcttattatt tagcaggttt      7920
     ggcaataact ctgccctgct gtcattacat tcggctaaaa agttttactt tctgtatata      7980
     tttgcaacca gataatgcta ttacatttta ttactcatga ataaaaaaga ggaaaactta      8040
     ttaagagaaa ccattacatt aaaagaaatc ttgaaaaaaa tgatgatttt gcttgtttgc      8100
     ctatttaaaa tattttttca tttaatcact actgatattg attgatactg aatattaagc      8160
     ggaaaactgt cagccgctca gccccaatta ttgtaaaata cagagattct ttggagtcat      8220
     gagaagaaag gggagtacaa aaataacaat gaatttaaaa tctttgtaaa ttcacgactc      8280
     aaaccctcca cttcttcgcc tccaacctaa aatgttactt caaactactg aatttgcctt      8340
     atcacatgga tttcagaacc tgcatggacg aatctggacc ctcctataga tcacgcattt      8400
     ctggagcagc attttgcatc cacgatgtac ctgtcagcca aaagtcggtc caaatcatct      8460
     catctgaatg ccggattgca ccgatctttt catgtccttg cagccttaag cctgcagcaa      8520
     tcgatcatgc cagagcatcc taaatggtca acttttgatg acatccagca gacatcatct      8580
     cctttgatga caccctggac ttttggaacc aactttcatc ctctcatctg atgacacccc      8640
     gatctttttg gaaccaagct tcatcttcat gcaaatatag ctcgtccgtg gacatcctaa      8700
     ccaatgagaa ttgccgctta ccaaacatgg tcaacttcag ccgcctactc gcccggatgt      8760
     cacgcaactt catgatgcag ctgcacacac ctgatgatct ccataattcg cattttactc      8820
     aatccatatc tatagtggaa acgtattcaa atgcctttac ccaaccttcc attagaaaga      8880
     acatttcaga ccaacaagga ttttcccttt acgtaaattt ggtcacaata ctttaatcaa      8940
     tccttgaatt tgattttatg taccatttga acatatgtat gttaaacaat ttatcacaat      9000
     acatggacaa cggagaatgg ctgcggcgag ggcgccgagc ttcggggccg cccagacttg      9060
     tgatgcg                                                                9067
//
ID   Gypsy-15_BTa-LTR repbase;    DNA;    INV; 3477 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3477
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 689-689 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~92% identical to each other.
XX
SQ   Sequence 3477 BP; 1019 A; 613 C; 583 G; 1261 T; 1 other;
     tgtttttctt agtttttaat aagaaaaata tataattacg tagtaattat aaataaatac        60
     caaaacaatt ctcggtagat gtcaaagact gactgaaaac ttttattaac ctcttatgag       120
     aaaatataca ttttatcagc tgacactgac attgttgtca gatgaacatt ctcccgaggg       180
     agcgaaagtg attaaaattc atacatgacg tattataatt tattgatata tttgtggata       240
     tccattttat atgctaatta tgcaattgct gctatatgca tacaatgtca ctgtcttacg       300
     ggcgtcccct gcagttgaaa tgtcactgtc ttacgggcgt cccctgcagt tgaaatgtca       360
     ctgtcttacg ggcgtcccct gcagttgaac agtccattgt ttcagaactg atttagtccc       420
     acagagatta aaacgatctc tgcatggaat tattagccca cggagatcaa atagatcact       480
     gcatggaatt tttagcccac ggagatcaaa tcgatcactg catggaatta ttagcccacg       540
     gagatcaaat cgatcactgc atggaatttt taagcccacg gagatcaaat cgatcactgc       600
     atggaattag atttttatgg atatcaacaa atcttcatgg attactatcg gttgaattat       660
     gatttgttag attcggataa gcattgacag aatgattgtt gtcgccttct ctgaagtttt       720
     ccgatgttaa tctgttcttt tccaataagc tctaagttga tgattgattt tcacattaga       780
     cttcaaattt ttatgctctg gagtacagga agggtcgttc aaaagggtac agcattcaat       840
     taaattatac tctaatcatt tgatttgggt acctaagagg tcacaggtga tgatttttta       900
     ttcatcttga ataatcattc ccggccaaac aaaattgttg cagtgttgtg agtgcagtgt       960
     gtatgtgaat gttaaagtac tctctgctct gctcgttatt ctagacggtt taaagatata      1020
     ggaagttaaa gaataggata ataggaagtt aaacttgaat gccttctcct gtttttgttc      1080
     attattttct tcttttgcgt ttcttttcat catcgatagg cgatgagcat tcagtcaggg      1140
     tttcatacaa gatttcatgc ataggatgta ggatgtacat aggacaacac aagatggacc      1200
     ggagaacata ggacggacgg gacagcagag gatatggata ggctcggttt agttcctgca      1260
     gtatttttgc tcttagttga tagtatgttg cctgaaacaa gatgacaaca gaaacagaaa      1320
     aacgaactat ctattttgca cattgatatt aacttgagat cataatgata tgtctgataa      1380
     tatcagataa tttagtccgt cttgcttcta cacctagtgt aaaatcttat ttacgttctt      1440
     tcttatccag agatgccact tatctccagc tagaaataag aatagctttc aatactacta      1500
     atcgccaata cgggaatttt aatacttctt gaactttact ctgtggcaca ttcgatcaat      1560
     aaggatctgc actcttatta tgtaaaccac tgaactcaga ctcgtttgtc aacacttttc      1620
     ttttatctcc ttatttcagc agtatttatt agtcttccac agtctttcag ctctaaattt      1680
     aatctttaaa tacctcttta aatgtcttta ctttttctca caatgaattt ctcaagtctt      1740
     tcatctctat tcaagaggat tattaaaagt ataaatacat catacatttt ggatgatttc      1800
     cttccgcacc aaaaagaaaa tcccaaattt ttggaaattc gatttccaat tagagcgcta      1860
     ttaaatcgat ttttagtatg ccataataat ttactgagga attattaatt ttgcattatt      1920
     ttcaccatgt gttaaaatag tttataataa ttaatccgca acgatgataa attaggatta      1980
     gttaaatcca tatatgttaa acttgcttca tttctccatt atgctcgatt ttaaaactca      2040
     tctcacaatc agtctctgat cataacctca ttaacatctt ctgctcactt aggtcatact      2100
     ttttcttctc attcagattt atactctttt ttcgcattta ggttatttct tcttactcaa      2160
     atttatactt ttttcttttt ctcactcagg ttgtaaattg gagtcaagct ttctttttga      2220
     gacgactgtc tttcgacgtt gttgcctaca tacctgcttc gttaggtctt tattgcctaa      2280
     atgcacttcc gcttagatag gcttagatgt gattttgtag caaatgttgc aacttacttg      2340
     gcaacaatgc caacctaaat taacgttata caatcgttga acatagttca acaatactta      2400
     aatcgtacga tgatttgact ataaaacata taaaactgaa ataattttaa tagtagtttt      2460
     tcataccatt ttcggaaagg tggacaggat aacaggttat aatatcatcc attttcagga      2520
     gtttctgaac gagttcatac tatgtcataa ttctcttcgg tgggctttag gtgttcgatt      2580
     aagtccggct tgccctctta atgcacgttt gagatgatag aatttcgcaa ttgttgaaaa      2640
     atggcttgaa gctctgccat actcttcata tcccccagaa aagcctctag agttttttaa      2700
     tttggttttt tgattgttgt tagaagcatc attttttgta tttttgtcag tttcttctct      2760
     cttttcttcc attagtgtct ttagactttt atcattgttt cgtagaatct tgtttcaaat      2820
     tcactcaact catttggatt tacatctggt tcgatcattt gaagttcaaa atttgcttgg      2880
     gaaaattggg taaagatctg cttggcttcc tcataacgaa tgtttaagtt cgtcatgtta      2940
     cttaacgttt tcttgtgcta cgaagttctc aaggcttgac agctgatagt taagatgaag      3000
     ttttgttgcc aaaaggctgg cttttttcgc tttttgcatt gttaggccga attactgtct      3060
     gatatttcca aattgaatcg tggaaatcgg tcgattactg cacgattttt aataacttag      3120
     gtatgtggag atcaatccat cactgcacat acttggtatt gacacggaga tcgagcgatc      3180
     actgcatgtc tcaaccacaa katgataatt atcttttcaa ttcggccgta tattccactt      3240
     ttgtgaaaat ttttaatttt cgttgacgtc ttctaaattg cgcagatgaa gatcacgtcg      3300
     gggtcaccat gtttttctta gtttttaata agaaaaatat ataattacgt agtaattata      3360
     aataaatacc aaaacaattc tcggtagatg tcaaagactg actgaaaact tttattaacc      3420
     tcttatgaga aaatatacat tttatcagct gacactgaca ttgttgtcag atgaaca         3477
//
ID   Gypsy-15_CFl-I repbase;    DNA;    INV; 4271 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4271
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1036-1036 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           34..2193
FT                 /product="Gypsy-15_CFl-I_1p"
FT                 /translation="MDRLLQALAETAQNQEQTLRQIGESQKQMAEILSHRI
FT                 SRTDDTAKSSQFANLATRLGKFVHDPTRGKTFTLWFERHRSTFAEGAKGLT
FT                 DTESKELLLNALGDDEYQQLLSRLSPKKPQEMSLADLVQHLRKQFHDNKTL
FT                 FQRRFEALNFRASPPATAIEILDKVNVLGDAFELDNFNIDQLKILLTALAL
FT                 SDHTYYTERTVLFKVASEKENCTFQDIREICYAHANRTADVMRVEGQRFSE
FT                 INAVSQSTKNSPKKKGKYYEKKTNPTTLHYEKKRNSTTLSPCYGCGSAKHR
FT                 RDACPFKNAECRICKKTGHIARVCLSKQRNKINTVTLQGVLGTGHRYRKFV
FT                 HITINNKPLKMQLDTGADVTTIGRETWTRIGRPKLQPLTTSCVNVSGHPMH
FT                 TIGFFNASLGYKDCMIKAPVIVLDRPETALISSQAIDELGLITYDTGVVGN
FT                 LQMMNTITVNSFHKQFTELFSSSTGECTKMTVHLRLKPDAKPKHIPRRPIA
FT                 LALEEPVNEELDRLVKNGILTPVDFSEWAAPIVVARKANGKIRICADYSTG
FT                 LNDALDAEDYPIPGIEELMAKLRGSSIFSQLDLSDAYFHLRLDEESKKLTT
FT                 INTHRGLFAYNRLVFGLKPAPAIFQRTLEQALTGIPGVLVYLDDILIYGQE
FT                 RTEHDTRLHTVLNRLQEWGFRLQKEKCKFHTSIVKYLGFIVSAKGIEPDQH
FT                 VFDLSKQCELRRMQKRYARF"
FT   CDS           join(2300..2932,2691..3584,3464..4180)
FT                 /product="Gypsy-15_CFl-I_2p"
FT                 /translation="MKKTFEDIKNILTGPLLLAHYDPRQTLIVAADASSIG
FT                 IGGVLLQRAPDGQVKAVFHMSKALTKTQQNYSQIEKEALALVTAVERFRKF
FT                 VYGRHFVLQTDHRPLLALFKTSNTKGLDTRTANRLKRWALRLIGIRLRHRI
FT                 CQLRKIWSSGRSFKINTGCKTRRNRRRPRRSCSCATGNRYRATTDCQRIST
FT                 VLTFNGSTRAPKCNIQRWNSRLGYDFDIEYVNSEKFGQADALSRLIQDVKQ
FT                 DVIDADLEEVVAALQETDTELQQIVNESVQFLPSTARQELQSATFSDGILA
FT                 EVIDRLQNGWLKSDVTDKELMPYYRRRDYLAIVDNTLVLDEKLIIPKRLQS
FT                 TVLKQLHIAHPGIRRMIQLARRYFYWPAMHDDIERYVKECNHCDRTASNPV
FT                 KEPLHPWPNPEKSWSRLHIDFAGPIHGQWVLVIVDSYSKFVEAGWFSTITS
FT                 AATCRYLRRLFSRYGPPEVLVSDNGTQFTSVEFAQLCAEFRILHLRTLLGI
FT                 HNQMVKPREWSEHRYSIHFSRIRATVRRISNSSPAYPPGHPQSNGQAERMV
FT                 RTLKSSIDTSQSSQLETELNKFVYAYNYTPSDAVPDHKSPAEIFFGRKLRT
FT                 PLDIFTATEKPNLSLTSRQKQMKQQFDAHHGARPRSFVIGQSVLIQLSNGQ
FT                 RIPGKIVRLIGKALARVSFEGGFITRHFNQIWNRPKRQEKKSNTISEDLLP
FT                 SGKESARIQPDPVLHTSLGEREEAEPLNNGTTQPPGGHTTSSSSGSSF"
XX
SQ   Sequence 4271 BP; 1384 A; 972 C; 886 G; 1028 T; 1 other;
     attggcgctg cggcttattg aacctgcaag aaaatggacc gactacttca agcgctagca        60
     gaaactgcgc aaaaccagga gcagacatta cgtcagatcg gtgagtcaca aaagcaaatg       120
     gcggagatac tatcacatcg aatatcgaga acggacgata ctgcaaagtc gtcgcaattc       180
     gcaaatctgg ctacacggct cggtaaattc gttcatgatc ctacaagggg taaaaccttc       240
     acgttatggt ttgaacgaca tagaagcact ttcgcggaag gagcgaaggg tttaaccgat       300
     acggagagca aagagctact tcttaatgct ctcggggacg acgagtatca acaattactc       360
     agtcgtttat cgccgaagaa accgcaggag atgtctcttg cagatctcgt gcaacatctt       420
     cgaaaacagt tccatgataa taaaacgtta tttcaacgtc gttttgaagc tctcaatttt       480
     cgtgcttccc cgccagcaac ggctatagaa atacttgaca aagtaaatgt tctgggagat       540
     gcctttgagc tcgataattt caatatcgac cagctcaaaa ttctgctaac ggctctcgcc       600
     ctaagcgacc acacctacta cacggagcga acagtcctct tcaaggttgc atcagaaaaa       660
     gaaaactgca catttcaaga cattagagaa atctgctacg cacatgcgaa ccgcacggct       720
     gacgtcatgc gcgttgaagg acagcgcttc tccgaaatca acgcggtcag ccaatctacg       780
     aagaattcac ctaaaaagaa aggtaaatat tacgaaaaga aaacaaatcc tactacactg       840
     cattacgaga aaaagagaaa ttctactaca ttatcgccat gctatggctg cggttccgcg       900
     aaacacagac gggatgcatg tccgtttaag aacgcagaat gcagaatctg caagaaaacg       960
     ggacacattg ctagagtttg cttatcgaag caacgaaata aaataaatac tgtcacatta      1020
     caaggtgttc taggcacagg acatcggtat cgcaaattcg tgcatattac tatcaataac      1080
     aagccattga aaatgcagct ggatacagga gcggacgtaa ctacgatcgg gagagaaact      1140
     tggacacgaa tcggtcgtcc aaaactccaa cctcttacta cttcatgtgt kaatgtctca      1200
     ggacatccaa tgcataccat aggatttttt aacgcctcac ttggctacaa agactgtatg      1260
     ataaaagcac cagtcatcgt acttgatcgt ccagaaactg cactaattag ctctcaagca      1320
     atagatgagc ttggcttaat tacctacgac acaggagtcg tcggaaatct gcaaatgatg      1380
     aatacgatta cggtaaattc atttcataaa caattcacag aactttttag tagttccaca      1440
     ggtgaatgca ccaagatgac agttcatctg cggcttaaac cagatgcgaa accgaaacat      1500
     attccacgac gtccaatcgc acttgcatta gaagaaccag tcaatgagga actggataga      1560
     ctcgttaaaa atggaatttt aacgccagtc gacttttcgg aatgggctgc gcccatagta      1620
     gttgcacgca aagcaaatgg gaaaatacgt atttgtgcag actactctac aggattaaat      1680
     gacgcacttg acgcggagga ttatccaatc ccaggtatag aggaacttat ggcaaaactt      1740
     cgaggaagtt ctatcttctc acaactagat ttatctgatg cttatttcca tctaagactg      1800
     gatgaggaaa gtaagaagct aactacaata aatactcatc gaggtttatt tgcttacaat      1860
     cggttggttt ttggattaaa accagctcct gcaattttcc aacgtacgct ggaacaggca      1920
     cttacaggta ttccaggcgt actcgtctat cttgatgata ttctgattta tggccaggaa      1980
     cgcacagagc acgatacgcg tttacacacc gtgctaaacc gcttgcaaga atggggtttt      2040
     cgactccaaa aggaaaaatg taaatttcat acttcaatag ttaaatacct tggatttatt      2100
     gtttcagcta aaggtattga gcctgaccag cacgtcttcg acctatccaa acaatgcgag      2160
     ctccgacgaa tgcaaaagag atacgctcgt ttttaggtct gataaattac tacgggaaat      2220
     ttgtgccaaa tttgcatcga ctcaaagcac cattcgaagc tttgatcaag aaagatgtac      2280
     cttcgtgtgg acagcaaaaa tgaagaaaac gtttgaggat attaaaaata ttcttactgg      2340
     accacttcta ctagcgcatt acgatcccag acaaactctg atcgttgcag cagacgctag      2400
     ttcgatcgga attggtggcg tcctgttaca gcgcgcccca gatggccagg taaaagcagt      2460
     ctttcacatg tcaaaagcat tgacaaagac tcaacagaat tacagccaaa tcgaaaaaga      2520
     agctttagca ttagtcactg ctgttgaacg ttttcgaaaa ttcgtatatg gtcgtcactt      2580
     cgtgctacaa acggaccatc gtccacttct agccctgttt aaaacgtcga atacaaaagg      2640
     tctagataca cgcacagcaa atcgtttgaa acgatgggct cttcgactaa ttgggatacg      2700
     acttcgacat agaatatgtc aactccgaaa aatttggtca agcggacgct ctttcaagat      2760
     taatacagga tgtaaaacaa gacgtaatag acgccgacct cgaagaagtt gtagctgcgc      2820
     tacaggaaac agatacagag ctacaacaga ttgtcaacga atcagtacag ttcttacctt      2880
     caacggctcg acaagagctc caaagtgcaa cattcagcga tggaattctc gctgaggtta      2940
     tagatcgtct acaaaacgga tggctcaaat cggacgtaac tgacaaggag ttaatgccat      3000
     attatcgtcg tcgcgattac ttagccatag ttgataatac attagttcta gatgagaaac      3060
     taataattcc taaacgtcta caatctactg tactgaagca actacacatt gcacatccag      3120
     gtatccgccg gatgatacag cttgctcgac gttatttcta ttggccggcg atgcatgatg      3180
     acatcgagag atacgtaaaa gaatgtaatc attgcgatcg cacagcaagc aacccagtaa      3240
     aagaaccatt acatccatgg ccaaatccag agaaatcatg gtcacgcctt cacattgatt      3300
     tcgcaggccc gatacatgga caatgggtac tcgtcattgt cgacagctac tccaaattcg      3360
     tagaagcagg atggttctca acaataacat cggcagcaac atgtcgatat ctgcgaagac      3420
     tctttagtcg atatggacct cctgaagtac tagtttcaga taacggtact caattcactt      3480
     cagtagaatt cgcgcaactg tgcgccgaat ttcgaattct tcacctgcgt accctcctgg      3540
     gcatccacaa tcaaatggtc aagccgagag aatggtcaga acattgaaaa gttctatcga      3600
     cacaagtcaa agttcacagt tagaaacgga attaaacaag tttgtttacg catacaacta      3660
     cacacccagt gatgcggtac cagatcataa gtctccggca gaaatattct ttggacgtaa      3720
     gcttagaact ccattagata tttttactgc aaccgaaaaa cctaatctaa gtcttacttc      3780
     tcggcagaag caaatgaaac aacaattcga cgctcatcac ggcgcaaggc cacgttcatt      3840
     tgttataggt caatcggtac taattcaact ctccaatgga cagcgtattc ctggaaaaat      3900
     tgttaggctg atagggaaag cactcgctcg cgtcagcttt gaaggaggat tcattactag      3960
     acatttcaat caaatatgga atcgtccaaa gagacaggaa aagaaatcca atacgattag      4020
     cgaagatcta ctaccctccg gaaaagaatc agcacggatt caaccagatc cagtacttca      4080
     cacttcgcta ggagaaagag aggaggcaga acctctcaac aacgggacca cacaacctcc      4140
     agggggccac acaacctcca gtagcagcgg ctcgtcgttc tgaacgtctt tcgcatcgaa      4200
     ttcgaccaga ttacaaggca ttgggaggaa ctcgccccta ccgaggacag cattcttaag      4260
     caagggagga a                                                           4271
//
ID   Gypsy-15_CFl-LTR repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   20-JUN-2012 (Rel. 19.04, Created)
DT   20-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-357
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1037-1037 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 357 BP; 118 A; 91 C; 82 G; 65 T; 1 other;
     tgttgggtat attgcgccat ctgacaggcg ctaagcacta cgctactgct tgacgaactg        60
     cgcaaccaag aacgattgct gcacgacaaa gcgcaagtac gacgtggcac gatkatgcac       120
     acggcacgat tgtgcacacg gcaccacagt aagaagaagt cttaaaaggc cgaccgagag       180
     acggatcgtc ggagaagcat aggtgtggcc gacgtgtacg gagcacaacg acgtgctcga       240
     atcttctact actacttcgg actgttcatg gaatcaagac ataatatcaa gacacaacga       300
     cgttaaacat tatccgaaaa ctaacaaaca caacaatttg cactccgaaa cacaaca          357
//
ID   Gypsy-15_CQ-I repbase;    DNA;    INV; 5256 BP.
XX
AC   AAWU01024898;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_CQ_;
KW   Gypsy-15_CQ-LTR; Gypsy-15_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5256
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 409-409 (2011).
XX
DR   Genome; AAWU01024898; Positions   15206   20461.
XX
CC   Positions [2488-3021] - Reverse transcriptase
CC   Positions [4174-4644] - Integrase core
CC   'CCCCG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           838..1755
FT                 /product="Gypsy-15_CQ-I_1p"
FT                 /translation="MTGPPLDGAGQVPPVPSPVFSPASYNLPNFKYIHLPP
FT                 SEVRNAWISWIRWFESIMAAAGVIDSLTKKMQLMAMGGAELQSAYYGLPNV
FT                 EPVGPTVTPYEDAKEKLDQHFSPKHHDSFERFLFWSMHPAEDESIEKFCLR
FT                 VQQKAEKCYFGKTDTESRHIAILDKIIQYSSEELRQKLLEKEKLTLDDAMK
FT                 TINAHQSVRYQAEKMSSNVTNKAPTPTVVNRMYDGNRKDGENSGSQRGCRQ
FT                 CGYPSHRNGESCPAADRKCLRCNHVGHFRSVCTTRFPSNDVSNLNLIILEK
FT                 RLTKFVLGVKRSEA"
FT   CDS           2002..5136
FT                 /product="Gypsy-15_CQ-I_2p"
FT                 /translation="MEADETQRCAHIQREVIFIVLLFLKVGLQTNYFYRID
FT                 SHKRFLAYGRVPLKLITAFDANLEIDDNGHTLETKTSFFVIEKGQQPLMGK
FT                 ETAQKLGVLKIGLPSTHQHSVHRVKTNSNAFPKMKGITVTLPIDRSVPPVI
FT                 QPLRRCPIPLLDKVKSKIDELLEMDIIERVTRPTSWVSPLVPILKENGELR
FT                 LCIDMRRANQAIQRLNHPLPVFEDFLPKFRNAKLFTTLDIRQAFHQVELSH
FT                 DCRDITTFVTNWGLFRYTRLLFGVNAAPELFQNLMESILADCVNVAVFIDD
FT                 IVIFGATEGEHDAAVKGVLLVLKRYGILLNDHKCKFKQHEIRFLGHKLSSN
FT                 GVSPADEKVKSILQFRPPKTKEELRSFLGLVTYVSRFIPNLANQNALLRAL
FT                 LKQESPFAWKVEHQGEFDRLKRVIGSAQHLGFYDPQDRTLLVTDASGEGLG
FT                 AVLIQFKGSTPRIISYASKSLTDCEKTYPAIEKEALGIVWGVEKFKMYLLG
FT                 INFELETDHRPLETLFTATSRPTARIERWLLRIQAFKFRVVYRRGSANLAD
FT                 CLSRLGSHVADQWTDETEVYIRRIVAVSLSTFADCDDCCTFDVETEIFIRT
FT                 IQESAAIDIEEVIQATMSDNEMRKLKECVQSGKWDNAEMKQYALFRTEYTV
FT                 ANNLIMRGNKLVIPAGLRHRMCQLAHEGHPGESKMKTRLRDRCWWPGIDTD
FT                 AVQTCKSCEGCRLVQVPDAPEPMSRRSLPEKAWVDVALDFLGPMPGGEYVL
FT                 VVIDYYSRYTELAVMNKITARETINQLKRMFRVWGPPRTITLDNAKQFVST
FT                 ELHEYCQLNGIHLNHTTPYWPQANGEVERQNRSLLKRMKIANALYGEWKNE
FT                 LDRYLEMYNNTPHSVTGKSPNELLQNRRLRSKMPHVDDLATTPPSTEFRDK
FT                 DHEKKIMGKEREDAKRMAKPSNIEIGDNVLMKNLLPANKLSTNFLKEKFMV
FT                 IGRNGSNVTIESVDSGRTYDRNTSHLKKVVDAPSNTGSEPELIVEDGEVLQ
FT                 RADAEIIDDRADPDQNEPLPEEGLSRRSSRTRQIPQRYR"
XX
SQ   Sequence 5256 BP; 1556 A; 1112 C; 1283 G; 1305 T; 0 other;
     caaatggcga cgaggcttcg agcccgaaaa cgcgtgcgac ggtaaatcag tgcaaaagtg        60
     attatttttt tcggaaaatt tgttctggta cggtttgtgt tgaaaaaaat aagttatgat       120
     aagaaaaaag gaattattaa gatgaaaatc agcagtgtcg agtaaaagtg gggtgcacag       180
     gaaaaaatag ttcaaatcaa tattaaatgg ttttcccgat ctctgggttc gatttagtta       240
     ggtttaataa tgaaaaaaaa aaaccaagga aaactgtgaa aaaaaaagag ttatttcacc       300
     cgaaaaaaag ggaaagtagt ttaaaattaa ttgaagtgac gccactggga cgccattttg       360
     caaaagcgaa aattgagtga gattctccgc cacaggcaca gagaatgaga gtgtgaagaa       420
     acagtgaaaa aaaacgagtt ccccaagcaa cgttccgaaa atgagaagcg ctctcaatct       480
     ctcttgcata ctgctgttct taaactacct atgtattggt tgaattttcc ccggttcagc       540
     tggatatttt ctggttggat tgtgtgtgcg tgcgcgtggt gccgattaaa ttctggctgt       600
     tgaatgaatg gtgccgatta aattcaggct gataattatt tggtgccgat tgaattctgg       660
     ctgaggaatg ttttgtgccg attgaattct ggccgtcgat ttaatgatgc cgattaaatt       720
     caggcaatta gtgatttgat aaataagaaa aaagatagct taaatgtgtg ttagagtgga       780
     acggtctctt ttagagattt tgttttgatt tcttttaaca gtgaataaat tttcaaaatg       840
     acgggtcctc cgctagatgg agctggacag gttcctccgg tgccgtcacc ggtcttcagt       900
     ccagcctcgt acaacctgcc caacttcaaa tacatacatc ttccgccgtc tgaagttcgt       960
     aatgcgtgga tttcatggat acgatggttc gagagtatta tggccgcagc tggggtcatc      1020
     gacagtctaa ccaagaagat gcaactcatg gcaatgggtg gtgcagaact gcagtcggca      1080
     tattacggct tgccgaacgt agaaccggtt ggaccgaccg taacgccgta cgaagacgcc      1140
     aaggagaagt tagatcaaca tttttcaccg aaacatcacg acagttttga gcggttctta      1200
     ttttggtcga tgcatcctgc ggaagacgag tccattgaaa agttttgtct tcgggtccag      1260
     caaaaagccg agaagtgcta ttttggcaaa accgacaccg aaagtcgcca cattgcgatt      1320
     ctggacaaaa tcatccagta ctcttcagag gaattgagac aaaagctgct ggaaaaggaa      1380
     aaactgaccc tcgacgatgc catgaaaacc ataaacgctc atcagtcggt tcgttaccag      1440
     gccgagaaga tgtcaagcaa cgtgacaaac aaagcaccga ctccaacggt cgtcaaccgt      1500
     atgtatgacg gcaaccggaa agacggagag aactctggtt cacaacgcgg gtgccggcag      1560
     tgcggctacc catcgcaccg aaacggagaa tcgtgtccag ctgccgaccg aaagtgcctc      1620
     cgctgcaatc atgtaggtca tttccgatct gtctgtacaa cccgttttcc atcaaacgat      1680
     gtaagtaact taaatcttat tattcttgaa aagcgactga cgaaatttgt attaggtgtc      1740
     aaacgatcgg aagcgtaaac cggttttcca aaaccggaat caacaagctc cagcaagagc      1800
     tccagcaaaa cggtatcgtt ccgattcgag ccgtaacgca tttcgtgtcg aagaatactc      1860
     ctccgattgc gaaaccgaag atctcccttg ctataatgtt ggggaagccg atgatgaact      1920
     gattaagtgt cgcgtcggag gggttgatgt tgtcatgttg attgactctg gctcgaaaca      1980
     taatcttatc gacgatacga catggaagct gatgaaactc agagatgtgc gcatatccaa      2040
     cgagaggtca tttttattgt tttattgttt ttaaaagtag gtcttcaaac aaattatttt      2100
     tacaggattg actcccacaa acgattttta gcttacggaa gagttccgtt gaaactaata      2160
     acagcatttg atgcgaatct tgagatagat gataacggac acaccctgga aactaaaact      2220
     tcgttcttcg ttatcgagaa gggtcaacaa ccgttgatgg gcaaagagac tgctcaaaaa      2280
     ttgggcgttt tgaagatcgg gttgcccagc acccaccaac attctgtgca cagggtcaag      2340
     acaaacagca atgcatttcc taaaatgaaa ggcatcacgg ttacgcttcc gatcgaccgc      2400
     agcgttcccc cggtcattca accattgcga agatgtccta ttccgctact ggacaaggtc      2460
     aaatcaaaaa ttgacgaact cttggagatg gacattatcg agagagtgac ccggccgacc      2520
     tcgtgggttt ctccgttagt tccgatcctc aaagagaacg gcgagcttcg gctttgcatt      2580
     gatatgcgac gggctaacca ggcaatccag cggttgaatc acccattgcc ggtgttcgag      2640
     gattttttgc ccaaattccg gaacgccaag cttttcacta ctcttgacat tcgtcaagca      2700
     ttccatcaag ttgagttgag ccatgactgt cgggacatca caaccttcgt cacaaattgg      2760
     ggactgtttc gttatactcg gttgcttttt ggagtaaatg cggccccgga attgttccaa      2820
     aatctcatgg aaagcatatt ggctgactgc gttaacgttg ccgtctttat tgacgatatc      2880
     gttatctttg gcgctactga aggagaacac gacgctgcag ttaagggagt tttattggtc      2940
     ctgaagcgct atggaatctt gctcaacgac cataagtgca agttcaaaca acatgaaatc      3000
     cgatttcttg ggcacaagct atcatctaac ggggtgtcac cagctgacga gaaagtcaag      3060
     tcaattctcc agttcagacc accaaagacg aaagaggaac tacgcagctt cttggggctt      3120
     gttacgtatg tttccaggtt catacctaat ctggctaatc agaacgctct gctacgagcc      3180
     ttgctgaagc aagaatcgcc cttcgcgtgg aaggttgagc accaaggaga attcgatcgg      3240
     ctgaagagag ttattggatc tgcacaacat cttggtttct acgaccctca ggatagaact      3300
     ttacttgtca cggatgcatc tggagaagga cttggagctg tcctcattca attcaagggt      3360
     agtacgcctc gtatcatcag ttacgcatct aaaagtttga cggattgcga aaaaacgtac      3420
     ccagcgattg aaaaagaggc gttgggcatt gtttggggcg tggaaaagtt caaaatgtat      3480
     ctattgggaa tcaactttga gcttgaaaca gaccatcgac cacttgaaac actctttacg      3540
     gctacatccc ggcctactgc caggatagag cgatggctgc taaggataca agcattcaag      3600
     ttcagggttg tgtaccgcag aggatcagcg aacttagccg actgcctctc cagattggga      3660
     tcacatgtcg ccgaccagtg gacggatgaa acggaagttt acattaggcg tattgttgca      3720
     gtatcgctgt cgacgttcgc agactgtgac gattgctgca ctttcgacgt cgaaacggag      3780
     atatttatca ggaccattca ggaaagcgcg gccattgata ttgaagaggt gattcaagcc      3840
     acgatgtctg ataacgagat gaggaaactc aaggagtgtg tacaatctgg aaaatgggac      3900
     aacgcagaaa tgaagcagta cgctttgttt cgcaccgaat acactgttgc taacaatctc      3960
     atcatgcgag gaaataaatt ggtgattcca gcaggcctac gacatcggat gtgtcaactt      4020
     gctcacgagg gccatcccgg ggagagcaag atgaaaacgc gacttcgcga tcgttgttgg      4080
     tggccgggaa ttgatacgga tgcggttcaa acgtgtaagt catgtgaagg ttgtagatta      4140
     gttcaagttc ccgatgcacc tgagccgatg tcgcgccgct cgttacctga gaaggcttgg      4200
     gtcgatgtag ctttggactt cctggggcct atgcctggtg gagagtacgt gctcgtggtt      4260
     atcgactact atagcagata tacagaactg gcggttatga acaaaattac ggcaagggaa      4320
     acgatcaacc agctcaaacg aatgtttcgc gtatggggtc cgcccagaac tatcacattg      4380
     gataatgcga aacaattcgt ttcgacggag ctccatgagt attgtcaact gaacgggatt      4440
     caccttaacc acaccactcc ttactggcca caggccaacg gcgaagtcga aagacaaaat      4500
     cgatcgctat tgaagagaat gaagatcgcc aatgcgttgt acggagagtg gaagaatgag      4560
     ctcgatcgat atctggaaat gtacaacaac acacctcact ccgtgacagg aaaaagccca      4620
     aatgagctgc ttcagaaccg gcgtttgcgc tcaaaaatgc ctcatgttga tgatctggcg      4680
     accacaccac cgagtacaga gttccgcgac aaagatcacg agaaaaagat catgggaaaa      4740
     gagagggaag acgctaagcg tatggctaag cctagcaaca tcgagatcgg cgataacgtt      4800
     ttaatgaaaa atcttctccc agcaaataag ctatcaacta acttcttgaa ggagaagttt      4860
     atggtgattg gcagaaacgg atcaaatgtc acgatcgaat cagttgattc tggtcgtacc      4920
     tacgacagga acacatcgca cttgaaaaag gtcgtcgatg ctccatcgaa cactggcagc      4980
     gagccggagt tgattgtgga ggatggtgag gttttgcagc gagctgatgc tgaaataatc      5040
     gacgatcgag cagatccaga tcaaaatgaa ccacttccgg aagaaggatt atctaggcga      5100
     tcgagccgaa ctcgccaaat cccgcagaga taccgttgag ttttgggaac cccatgatgt      5160
     aactatgtta taataaatag actagaaccg tattagttgt tcattaattt aaataaagaa      5220
     aagaaagaaa aaacttaaac tttacaaaag agggga                                5256
//
ID   Gypsy-15_CQ-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   AAWU01024898;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_CQ_;
KW   Gypsy-15_CQ-I; Gypsy-15_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-142
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 410-410 (2011).
XX
DR   Genome; AAWU01024898; Positions   15064   15205.
XX
SQ   Sequence 142 BP; 28 A; 37 C; 42 G; 35 T; 0 other;
     tgtgatagga acgacccaca gttgcatgtg tgtgcggtgg cagcatcatg atcctcatgt        60
     gagagagcga gcgtctgagc ttgcttgctg tgtgctgtac cgaacacttc agtctccgtg       120
     tgaccgcgcg ctagctacca ca                                                142
//
ID   Gypsy-15_DAn-I repbase;    DNA;    INV; 5906 BP.
XX
AC   AAPP01017155;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DAn_;
KW   Gypsy-15_DAn-LTR; Gypsy-15_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5906
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017155; Positions   13117   19022.
XX
CC   Positions [3747-4220] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           328..1326
FT                 /product="Gypsy-15_DAn-I_1p"
FT                 /translation="MQSEQASTSAAARHILSDSNMNHFFMQLKQIDKFDGD
FT                 TMYLALFIKSVDNLITQYKTTSSTQNEIIQGAILNLIVGPARTILLRNSTQ
FT                 DWNELRTLLISEFNSSKPPHLMIMDLHKIKYQNSLRKFIDDLDKQTSKICN
FT                 KLSLDNNAANTVIFSRILGDHIAEVIREKLPLRVYISICKYDISTPTKLKQ
FT                 AAQAVGLYDDDDIYNFSRSVENRYNIPMVSTSNTSNTNNSNNNQRDRNQNF
FT                 NQNVGNNRSQNYNNRGTYNYQQRQNTFDSNRNFNSNYNNNYRYSQNPSGQN
FT                 SPNYNRSVNVPQKQSDQQNRPEPMEIVENFQTQASEETQQQ"
FT   CDS           1644..4574
FT                 /product="Gypsy-15_DAn-I_3p"
FT                 /translation="MINIIKEHNKNYTNMLEDEEHIYALETELKTSYIRDD
FT                 HLNSEEKSALHSLMSKFFDIQYHEGDNLTFTNEIKHKIKTKHEDPIYRRPY
FT                 TYPYIYDNEVENQIADMIKQGIVRKSKSPYCSPIVIVPKKMDASGIPKFRM
FT                 AIDYRGLNEITIDDKFPIPNMDEILDKLGKCQYFTTLDLAKGFHQIEMDPR
FT                 SIQKTAFSTKKGHYEYTRMPFGLKNAPATFQRCMNNILHDIIGTHCLVYLD
FT                 DIIIFSTSLQEHIQSLQKVFVRLRKSNLKLQLDKCEFMKRETEFLGHIITT
FT                 EGIKTNPNKIQAIHDFKIPSTPKQIKSFIGLCGFYRKFVREFAKIAKPMTQ
FT                 CLKKGSKINVKDNNYVEAFEKLKTLITNDPILRYPDFEKTFELTADASNYA
FT                 LGAVLAQEGRPVCYASRTLNDHEINYSTIEKELLAVVWATKYFRPYLFGRK
FT                 FKITSDHKPLVWLHNIKEPNMKLQKWKIYLSQYDCGMNYIKGKENYVADAL
FT                 SRLPKKESNNEQLEETFQNEDDLQSTGATIHSAQEDNGNCIQITERPINVF
FT                 SHQLIFEKGNEDSNELVRYFNKTINTIKYSNMTERTAKDIILKFVCGHNFV
FT                 MYINNDEDFAIFQRAFMELIKPNLGTKLMKTSVILPNISTYADFHEKVINI
FT                 HEKTIHQGIKKTYEDFKAKYYFPDAQKLIQNIINKCDICNLCKAEHRKVAL
FT                 TFEKTPESKNIREKYVIDYYFIDQRKFLTCIDIYSKFVSIIETHTTDWIES
FT                 KKALLKIFNMLGKPKIIKMDQDPGLVCKSLQNWLEKENIEIEITSSKNGIA
FT                 DIERVHKTINEKLRIINTLNDAEDKLMNIEKATYVYNHEITHDTTGRTPAE
FT                 IFIFGMKPNKNVQKIKESKIDKINEKREEYEVDLNYAKVEKDMKRKPKLVN
FT                 PFKKTGKIIQKDEKHWQEINRGHKVIKHKSKFKKLKKRNFSRYSRNVENSD
FT                 SDIESDNNSTMDNVTINNGSTN"
FT   CDS           4492..5904
FT                 /product="Gypsy-15_DAn-I_2p"
FT                 /translation="MLKILTLILKVIIIVPWTTLPLITAQQISIVPITSKN
FT                 GYLLLNTGTIKIPLNYEHHMIEINQTKILNTYQEFIKYENLYKTIPDIALA
FT                 LKQLKHEIKGIIPSNRQKRGLVNIVGSAHKYLFSTLTEEDKKELEVKLNNI
FT                 KENMIENSEFNEIIGIINKHTEDINKLIREEEENEALHLFRYSLHIFLEYI
FT                 EDLQMGIQLTRIGIFNPKILKHEELDDINEEKLLSIKTSAWICSQTKNTFI
FT                 LAHIPTSFNETQKYRIIKYPDNLGRQIDINDKFEYFMNNNKNVYYLENSAN
FT                 PLVDVMDQKYLVTDQCISKILTNQLAICQHTFISEKEFIKYIEPNIVITYN
FT                 LSKTQINQNCELFNKTIEGNNIIQLSQCTLEIRNIKFTTSKNINEYKIILS
FT                 STSVTLHEPTPILKLKESLIKQQKQDIVYKWIVFISLILIVVSITIYIIFT
FT                 YKRLANHKEIVVEFNKDVEISKGGAS"
XX
SQ   Sequence 5906 BP; 2543 A; 859 C; 796 G; 1708 T; 0 other;
     tataattggc gcagccggta ggatacaatt atcctcgcgt gttttaagta tcgaactaaa        60
     tacatcgcga atttattgta tccgcaaaac gaatctataa acatttctaa acattagtga       120
     aatcacgaat gaggatttct agtgtgaagt gcaacaaaca ttacataaaa aattttaata       180
     ccagggaact cagcattagt caaatcacga atgaggattt ctaatgtcta tttgaaataa       240
     acaaataaaa taaaattatt aacataatca agacaattta aaaaataaaa aacatatata       300
     taccaaatta aataaataaa ctttaaaatg caatctgaac aagcatccac atcagctgca       360
     gcaaggcaca tcctgtctga cagcaatatg aatcatttct tcatgcaact aaaacaaatt       420
     gacaaatttg atggtgatac aatgtattta gcactattta taaaaagtgt tgataacttg       480
     attacccaat acaaaacaac atcgtctact cagaatgaaa tcattcaagg agctatccta       540
     aacctcatcg ttggacctgc acgtacaatt cttcttagga attcaaccca ggactggaat       600
     gaattaagaa ccttactcat cagtgaattc aactcatcaa aacccccaca tcttatgatc       660
     atggatttac ataaaattaa atatcagaat agtttacgta agtttattga tgatttagac       720
     aaacagacaa gtaaaatttg taataagtta agtctggata ataatgcagc aaacactgtt       780
     atattttcaa gaatattagg tgatcatata gcagaagtaa ttcgtgaaaa attaccatta       840
     cgagtgtaca tatctatatg caaatacgat atatcaactc caactaaatt aaaacaagct       900
     gctcaagctg taggtcttta tgatgatgat gatatatata atttttcccg aagtgttgaa       960
     aatcgatata atataccaat ggtctccaca tctaatactt ctaatactaa taattctaat      1020
     aataatcaaa gggacagaaa ccaaaatttc aatcagaatg taggaaacaa taggagtcaa      1080
     aattataata atcgtgggac atataattat caacaaagac aaaatacttt tgattcaaat      1140
     agaaatttta attcaaacta taataataat tatagatact ctcaaaatcc ttcaggtcaa      1200
     aactctccaa attataatcg gtctgttaat gttcctcaaa aacaatcaga ccaacagaat      1260
     agaccagaac caatggaaat agttgaaaat tttcagacac aagcctcgga agaaacacaa      1320
     cagcaataaa aataaaaatt gataatagac catgcatttg ccttattgac acaggttcca      1380
     gtataagttt aataaatgaa aattttttaa aatatccaat taaagagaat aatataaaag      1440
     ttcaaacagt aggaaattca gtcactttga ataaatccat tgaatttata attccaaaat      1500
     tatttaaatc aaaacaaaaa ttttttgtca aagaattttc caatcattac gattttcttt      1560
     taggacgtaa tattttaaac cttacatcag cccaaataga ttttggaaag aatactgtta      1620
     aactaaataa ttacgaattt ccaatgatca atataataaa ggaacataac aaaaattata      1680
     caaatatgtt agaggatgaa gaacacattt acgcattgga aacagaatta aaaactagtt      1740
     atattcgaga tgatcatctc aacagtgagg aaaaatcggc actacattct ctaatgtcca      1800
     aattctttga tattcagtat catgagggtg acaatttgac cttcacaaat gaaatcaaac      1860
     ataaaataaa aactaaacat gaagatccca tttatagaag accatatact tatccctata      1920
     tttatgacaa tgaagtagaa aaccaaatag cagatatgat taaacaaggt attgtccgca      1980
     aatctaaatc tccttattgt agtcctatag taatagtacc caagaaaatg gatgcatcgg      2040
     gcattccaaa atttcgtatg gctattgatt acagaggact taacgagata actattgacg      2100
     ataaattccc cattcccaat atggatgaaa tactagataa gttaggaaaa tgtcaatatt      2160
     ttacaacgtt agatctggca aagggattcc atcaaattga aatggaccca agatcaattc      2220
     aaaaaacagc cttttccacc aagaaaggac actatgaata tactagaatg cctttcggtc      2280
     taaaaaatgc tcctgctaca ttccagcgat gtatgaataa tattcttcac gatataatag      2340
     gaactcattg cctagtatat ttagatgata ttattatatt ttcgacctcc ttacaagaac      2400
     atattcagtc ccttcaaaaa gtcttcgtcc gattaagaaa atccaatctt aaacttcaat      2460
     tagataaatg cgaattcatg aaaagagaaa cagaattttt aggccatata attactactg      2520
     aaggaattaa aacaaaccca aataaaattc aagctattca cgattttaaa attccaagta      2580
     ctcctaaaca aattaaatca tttattggtc tttgtggatt ttaccgaaag tttgttagag      2640
     aatttgcaaa aattgctaaa ccaatgaccc agtgccttaa gaagggttca aaaataaatg      2700
     tcaaagataa taattacgtt gaagcatttg aaaaattaaa aacactaatt acaaatgatc      2760
     caatccttag atatccagat tttgaaaaaa catttgaatt aactgctgat gctagtaatt      2820
     atgctttagg agctgtccta gctcaagaag gtagaccagt ttgctatgca agtagaacat      2880
     taaatgatca tgaaataaat tattcaacta tcgaaaaaga gttattagcc gtagtctggg      2940
     caactaagta cttccgaccc tatctatttg gaagaaaatt taaaattaca tccgatcata      3000
     aaccactagt ttggttacac aatattaaag aacctaatat gaaattacaa aaatggaaaa      3060
     tatatcttag tcaatatgat tgtggtatga attacattaa aggaaaggaa aattatgtag      3120
     cagacgcctt atctaggcta cctaaaaaag aatcaaataa tgaacaacta gaagaaacat      3180
     ttcaaaacga agatgattta caaagcacag gagctactat acatagcgcc caagaagata      3240
     atggcaattg tattcagatt acagagcgtc caattaatgt tttcagtcac caattaatat      3300
     ttgaaaaggg aaatgaagat agtaatgaat tagtccggta ttttaataaa acaattaata      3360
     caataaaata tagtaacatg acggaacgta cagcaaaaga tattattctt aaatttgtat      3420
     gtggacacaa ttttgtaatg tacataaata atgacgaaga tttcgcaata tttcaaaggg      3480
     ctttcatgga attaattaaa ccaaatttgg gaacaaaatt aatgaaaaca tcagtaatac      3540
     ttcctaatat atctacctac gcagattttc acgagaaagt aattaatatt catgagaaaa      3600
     ctattcatca aggtattaaa aaaacatatg aagattttaa agctaaatac tattttccag      3660
     atgcacaaaa attaatccaa aatataatta ataaatgcga tatttgtaat ttatgcaagg      3720
     cagaacatag aaaagtagca ttaacatttg aaaaaacccc tgaaagtaaa aatatccgtg      3780
     aaaaatatgt aattgactat tattttattg atcaaagaaa atttttaact tgtattgata      3840
     tctattcaaa atttgtttca attatagaaa ctcataccac agattggatc gaaagtaaaa      3900
     aagcattact taaaatattt aatatgttag gtaaaccaaa aataataaaa atggatcaag      3960
     atcccggatt agtatgcaaa tcattacaaa attggttaga aaaagaaaat attgagatcg      4020
     aaattactag tagcaagaat ggtatagctg atatagaaag agttcacaaa acaattaatg      4080
     aaaaattacg aatcataaat acacttaatg atgctgaaga caagctcatg aatatcgaaa      4140
     aagctacata tgtttataat catgaaataa cacatgacac tacaggtaga acccctgccg      4200
     aaatatttat tttcggtatg aaacctaata aaaatgtcca aaaaataaaa gaatcaaaaa      4260
     ttgataaaat taatgaaaaa cgggaagagt atgaggtaga tttaaattat gcaaaagttg      4320
     aaaaagatat gaaacgtaag ccgaaacttg ttaatccatt taagaaaaca ggaaaaatta      4380
     tacaaaaaga tgaaaaacac tggcaggaaa taaatagggg tcacaaagta ataaaacaca      4440
     aaagtaaatt taaaaaactt aaaaaacgca atttttctcg ttattccaga aatgttgaaa      4500
     attctgactc tgatattgaa agtgataata atagtaccat ggacaacgtt accattaata      4560
     acggctcaac aaattagtat tgtcccaatt acttcaaaaa atggctattt actattgaat      4620
     acaggaacta taaaaatacc tcttaattac gaacaccaca tgatagaaat aaatcaaaca      4680
     aaaatattaa atacatacca agaatttata aaatatgaaa atttatataa aacaattcca      4740
     gatatagcat tagcacttaa acaattaaaa catgaaataa aagggattat cccatcaaat      4800
     agacaaaaac ggggattagt aaatattgta ggatcagctc acaaatattt gtttagtaca      4860
     ctaacagaag aagataaaaa agaattagaa gtaaaattaa ataatataaa agaaaatatg      4920
     atagaaaatt cagaatttaa tgaaatcatt ggtataataa ataaacatac agaagacata      4980
     aataaattaa tacgggaaga agaggaaaat gaagccttgc acctttttag atactcttta      5040
     cacatttttc tagaatacat tgaagattta caaatgggga ttcagttaac aagaattgga      5100
     atatttaatc ctaaaatatt aaaacatgaa gagttagatg acattaatga agaaaaatta      5160
     ttatcaataa agacttcagc ttggatatgc agtcaaacca aaaatacttt tattttagcc      5220
     catataccaa catcttttaa tgaaactcaa aaatacagaa taattaaata tccagataat      5280
     ttaggccgcc aaattgacat aaatgataaa tttgaatatt ttatgaataa taataaaaat      5340
     gtttattatt tggaaaattc tgcaaatcct ttagtggatg taatggatca aaaatattta      5400
     gtaactgacc aatgtatttc aaagatcctt acaaatcaat tagcaatttg tcaacacact      5460
     tttatttcag aaaaagaatt tataaaatac attgaaccaa atattgtaat aacatataat      5520
     ttaagtaaaa cgcaaattaa ccaaaattgt gaattattta ataaaacaat tgaaggaaat      5580
     aatattatac aattaagcca atgtacactt gaaataagaa atatcaaatt cactacttca      5640
     aagaatataa atgaatataa aataatattg tcaagtacca gtgtaactct acatgaacca      5700
     acaccaattt taaaacttaa agaatcatta atcaaacaac aaaaacaaga tattgtctac      5760
     aaatggattg tatttataag cctaatactt atagttgtaa gcataacaat ttatataata      5820
     ttcacttata agcgtttagc caaccacaaa gaaattgttg tcgaattcaa caaggatgtt      5880
     gaaatttcta aaggaggggc gagtag                                           5906
//
ID   Gypsy-15_DAn-LTR repbase;    DNA;    INV; 537 BP.
XX
AC   AAPP01017155;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DAn_;
KW   Gypsy-15_DAn-LTR; Gypsy-15_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-537
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01017155; Positions   12580   13116.
XX
SQ   Sequence 537 BP; 202 A; 120 C; 60 G; 155 T; 0 other;
     tgtatccaca gatacactta atgtatctgc aaatacccta gataacgaat cccccataaa        60
     accagtatac cctgccatac ctatcaaatc gtatataaac aacattccag agcctactgt       120
     gggaataatt caaataggct agacacaaac cctttcccat agcattatca ttggcatcca       180
     gacataaaca tagacataaa ccattcacac gcctttatcg acgacagtag acgtaaacat       240
     caaacccctt ttgctccaaa ttcataaaca agtgcccatc ctgggaacct acatgtcagc       300
     ataaagctct gaccaatcaa aactattcaa ccaaagtcca tctatgctgc cagcgtcgct       360
     gtcaccgata aaagctatag ttataagaaa attgaatttg taaaatcagt ttataatcaa       420
     cgatcaatcc aataggatat ctttataact cattcttgaa tttaataata aaatttataa       480
     aataaaaatc ctaattttta ttttttattt ttttatttta aatcgggaat taaaaca          537
//
ID   Gypsy-15_DAzt-I repbase;    DNA;    INV; 6081 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6081
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 796-796 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1136..2749
FT                 /product="Gypsy-15_DAzt-I_1p"
FT                 /note="RING finger."
FT                 /translation="MPLDRSTEYRNQPVDNETICCVCTQEVEHPGQLLATR
FT                 CNHYFHHSCFSTRLGNKKVCPVCRTALSKSTLNLADELEAAQGEGPQASMT
FT                 RSRSRTLKAQKSQALTMNLQNEGRSLSQPEGPSVAGLLAPPVLRNTQPQIP
FT                 AATLASAQSSARPDHAATEARLHQTIAEAVAAALAQHTQMLSNAIETGFQR
FT                 LSLQTATPIPMERVPSAPRQSSPVRQNQSFEQLFRISNREQAEPAIASDRP
FT                 MNLSSPPESQQTHQLRSDRISQIIANWKLRFSGRSSMSIDDFLYRVEALTS
FT                 QTLDSNFELLARYASNLFEGSAGEWYWRYHKSVPRVRWIDLCIALRSQFSD
FT                 GRTDLEIRTAITQRKQKPNEPFDSFYEDIVALADKLVQPMSEQSLLEVLRA
FT                 NLLHEVQHEILYVPIHNIVQLRQVVRKRERFMEDKSRPIPTARRFVPRNHV
FT                 NEMSVQTGMQAASDLEDADQLDIEALSLSCWNCNKQGHRYQDCEAERKVFC
FT                 YGCGKRDTYKPSCRKCSSSKNEMGRAPTTGARKLVSKATNTE"
FT   CDS           2761..5988
FT                 /product="Gypsy-15_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MPSLLPKPPDVTLNPRLTISNDIQEMPLVPSKLKISR
FT                 TRDRKRRDRFRLQSRDSRRAILASVINNLNDIRPYAEVMLLGRSICGLLDT
FT                 GASISCLGGKLAEELAQTNPEVKPMKSAVRTADGKSQVILGRISTPISFRG
FT                 NSKRICLYLVPSLSQELYLGIDFWRSFDLLPYFLMSKANMNSVAALSVDNP
FT                 MQISLSELERKELEATVRLFPSFAEKGLGKTSWLAHDIEVAEARPVKQRHY
FT                 AVSPAIEKLMYEELDRMLALGVIEESDSPWSSPVVIVRKPGKVRLCLDSRK
FT                 INEVTVKNAYPMPLIDGILSRLPKAQYISSIDLKDAYWQIPLAPKARDKTA
FT                 FTVPGRPLYQFTVMPFGLSNASQTMSKLMDKVIPPSLRNEIFIYLDDLLVI
FT                 SGSFEKHMSVLRALADRLAQAGLTINVEKSKFCLKEVKYLGHVIGYGTIQT
FT                 DPDKVAAIREFPVPRSVKQVRRFLGTTGWYHKFIKNYAGIAAPISDTLKQR
FT                 RSFVWSDEAQKAFEELKNQMCEAPVLHSPNFDLPFAIHCDASHTGVGGVLM
FT                 QTDGDGNDVPIAFMSRKLNQCQRNYSVTEKECLAAMMCVKKFRAYVEGHEF
FT                 TIHTDHASLKWLMSQTDLSSRLARWALKLQGFDFKIVHRKGSHNVVPDALS
FT                 RVHVEDLSAFSCDGLIDLQSDHFKSADYLGLISKIESNQTPMPDVKVVDKL
FT                 IYRRAEHAPSDRIADDLCWKLWVPKELVTEILKLNHEESLAAHSGINKTLE
FT                 KVRRYYYWPNLVTDVRSFINNCSICKCTKYPNRALRPPLAPVKETQRVFQK
FT                 LFIDFLGPYPRSKSGNIGIFVVLDQLSKYPFLKAVKKFTAEAITRYMEEDI
FT                 FHSFGVPEVVVSDNGVQFKSHHFKALLKKYNVQHFYTALYAPQANASERVN
FT                 RSVLAAIKAYVKPDQSDWDVQLSSISCALRSSVHSAVNDSPYRVAFGQHMI
FT                 TNGDTYPLLRRLQLLEDRTVKFDREDSFEVIRKTAQRTMQQQHQRNEKQYN
FT                 LRSRNVAFKVGQEVYRRNFQQSNFAKGFSAKLAPNFVKARIKRRLGHSYYE
FT                 LEDHQGRPIGKYHAKDIKQ"
XX
SQ   Sequence 6081 BP; 1589 A; 1415 C; 1529 G; 1548 T; 0 other;
     gtaaattata ttttatttgg cgcccaacgt ggggcccgaa gaggcccgag tgtcagacgt        60
     agcggattag gagcgcgttt agcatcctaa aggggcgctt tgaagtttta ttctaagttg       120
     ccctcagcca gacctgacct cgaattaaat ataagaaagt cgacaagacc cgccagccaa       180
     gcatattcat gctgaggctg aggactttag tccctttatc ccaacccttc tccccaatcc       240
     tatcctgtgg cactggtgtt ggatattctg atggtggaga cttcattgtt tcagataact       300
     tggagccacg tcttagtagt atccaaaccc tggtggtagg ctgtgctgga atcagtaata       360
     gcttcaggat tgcgatactg ccgtacacta cctgccacag cctcgaatcc agatgaattc       420
     actgcaaggg aggtgtttgg ccggatacag ggtgattcgt ggaataaatc tacgacctgc       480
     cgccaagccg gaactagtta gtgaatgcat tcttcagtat accttggtag ttaataggta       540
     cagttggtga cgtgtttcca gttttgcagg aatccactaa aaggattgac acttttggtg       600
     gccgcttaac ttgagacgaa gtcatgaatc tacctcggtc actgtccttt ttctttttct       660
     tccaatggtt gtcgctattg cgtggagact tactcagaag ggcggttgtt gccggaagat       720
     cctagtgaca ttatttgctg gtgcgtttct gtgtgctagg gctccttcat ggatcgataa       780
     ctgctgctcc agggtatttc tttgcgcatg atcgaatgtc gactgacgct ctgtgtgggc       840
     acgagtgtaa gaaagtcaac gttcgttagg tctaggtatt cgcaggaaac agggtgtggc       900
     cgagggctac tacttgtgcc gcgagatctg gaccggtggc aattcgttac tttcctttcc       960
     ttcttctctt cctaccacgc cttgttgttg gccacatcct cttcaggagg aagttgcatg      1020
     gtttccccaa attcaatttt gttgttgtat ttccttctgt tagtgtttct cataacgata      1080
     gctagtaatt taaggaattt tgataaagtt agtgatagaa cacaataccc ttgcaatgcc      1140
     tttagaccga agtacggagt acagaaatca gccggtcgat aacgaaacca tttgctgtgt      1200
     ttgtacccaa gaagtcgaac atccaggcca attgttggcg acccgctgca accattactt      1260
     tcatcactcc tgctttagca cgcgactagg gaacaagaag gtttgtccag tgtgcagaac      1320
     ggcattaagt aaatcgaccc taaacctagc cgatgaactg gaagctgccc aaggggaagg      1380
     accccaagcc tcaatgaccc ggtctagatc ccgaaccttg aaggcgcaga aatcacaggc      1440
     attgactatg aatttgcaga acgaggggcg aagtttgagt caaccggaag gtcctagtgt      1500
     tgctggcttg ctggccccgc cagtccttcg taatacgcaa ccgcaaattc cggcggccac      1560
     actagcgtct gcacaatcct cagctcggcc tgaccacgcg gctacagagg ctaggttgca      1620
     ccaaaccatt gcggaagccg tcgcagctgc attggcgcaa catacgcaga tgctttccaa      1680
     tgcgattgaa acggggtttc aaaggttgtc actccagaca gcaactccaa ttccaatgga      1740
     aagagtacca tcagccccta gacagtcatc tcccgttagg caaaatcaat ccttcgaaca      1800
     gctatttagg atttcaaaca gggaacaggc agaaccagct atagcgtccg atcgtccgat      1860
     gaatctttcg tctccgcccg aatctcagca aacacatcag ctgcgctcgg atcggattag      1920
     ccaaataatc gcgaactgga aattaaggtt ctcaggtcga tcttccatgt ccattgacga      1980
     cttcctctat cgtgtcgaag ctcttaccag ccagacgtta gacagcaatt ttgaattgct      2040
     agcgcgctat gcgagcaacc tgttcgaagg gagcgctggt gaatggtact ggagatatca      2100
     caaaagcgta ccaagagtgc gctggattga tttgtgcata gcattgagat cgcaattttc      2160
     agatggcagg accgacctgg agatcagaac cgcgatcacc cagagaaagc agaagcccaa      2220
     cgaaccgttc gatagctttt acgaagatat agttgccctg gccgataagc tagtgcagcc      2280
     catgtcggag cagtccttgt tagaagtatt gcgggcgaac ctccttcatg aagtgcagca      2340
     cgaaatttta tatgtgccca ttcacaacat cgtgcagttg cgtcaagtcg tgcgcaagcg      2400
     tgagaggttt atggaagaca agtccagacc gatccctact gcccgacgat ttgttccccg      2460
     taatcacgtt aacgagatgt ccgtgcagac cggaatgcaa gcagcatccg atttggaaga      2520
     cgccgaccag cttgacatag aagctttgtc actttcttgt tggaattgca ataagcaagg      2580
     ccaccgatac caagattgcg aggctgagcg gaaagtgttt tgctacgggt gtggtaagcg      2640
     ggacacttat aagccgtcat gtcgcaagtg tagctcgtca aaaaacgaga tgggccgtgc      2700
     accaacgacg ggtgcacgca aactagtgtc gaaggcgacg aacacggagt agcttgggct      2760
     atgcccagtt tgctccctaa acccccggac gtaactttaa accctaggct gactatttcc      2820
     aacgacattc aggaaatgcc attagtcccg agtaaactga aaatatccag aactcgagat      2880
     cgtaaacgaa gggatcgatt ccgcttgcaa agtagagatt ctcgtagggc gattttagcc      2940
     tcggttatta ataaccttaa cgacatacgg ccttatgccg aggtcatgtt gcttgggagg      3000
     agtatttgtg gcttattgga cactggagct tcaatcagct gccttggggg caaattggcg      3060
     gaagagttag cgcaaactaa cccagaggtc aagcctatga agtcagctgt gcgaactgcc      3120
     gatggtaaaa gccaggtcat tctaggtagg atatcaacgc ccattagttt tcgcggcaac      3180
     tccaagcgga tatgtctata tctcgttccg tccctatcgc aggaattgta tctgggcata      3240
     gatttttgga gaagtttcga cttattacca tactttttaa tgagcaaagc gaacatgaat      3300
     tcggtggcgg ctttgagcgt cgacaacccg atgcagatat ccttgtccga attggagcga      3360
     aaggaactgg aagccactgt gcgattgttc ccctcttttg cagaaaaggg gttgggaaag      3420
     acaagctggc ttgctcatga cattgaggtt gcagaggctc ggccagttaa acaacgacac      3480
     tatgccgtgt cgccggcgat cgaaaaatta atgtacgagg aattagaccg gatgttggcc      3540
     ctgggcgtga ttgaggaatc agatagtccg tggtcttccc ctgtcgtgat tgttcgcaag      3600
     ccaggaaaag ttcgcctctg cctcgatagc cgcaaaatta acgaagtaac ggttaaaaat      3660
     gcgtatccta tgcccctcat cgatggcatt ttgagtagac taccaaaagc gcagtacatt      3720
     tcaagcattg accttaagga tgcatattgg cagattccgc tagccccaaa ggctcgggat      3780
     aaaacggcct ttactgtacc tggtaggccg ctgtatcagt ttacggtgat gccttttggg      3840
     ttgtctaacg cttcgcagac gatgtccaaa ctgatggaca aagtcatccc accatctctg      3900
     cgaaatgaga tattcatcta tctcgacgat ttgctagtga tttcgggatc tttcgaaaaa      3960
     cacatgtctg tgcttagagc gctggccgac aggttggctc aagctggtct gacgataaac      4020
     gtcgaaaaaa gcaaattttg tctcaaggag gtaaaatatc ttggccatgt tatagggtat      4080
     gggacgatac aaacggatcc cgacaaagtg gccgctattc gagagtttcc agtgcctcgg      4140
     tcggtgaagc aagttcggag gtttttggga acaactggtt ggtaccataa attcatcaaa      4200
     aactatgccg gaattgctgc tccgatttcc gacacgctga agcaacgtcg atccttcgtt      4260
     tggtccgacg aagcgcaaaa agcttttgag gagttaaaga accaaatgtg tgaggctcca      4320
     gttctgcata gcccgaactt tgaccttccc tttgccattc attgcgatgc cagccacacc      4380
     ggagttgggg gtgtgctaat gcagacggat ggcgatggta atgatgtccc catagcattc      4440
     atgtctcgta agctgaacca gtgtcaacga aactattcag tcacggagaa agagtgtttg      4500
     gcggccatga tgtgcgtgaa aaagttcaga gcctatgtgg agggtcatga attcaccatc      4560
     cacactgacc atgcttccct gaagtggtta atgtcgcaga cggacctaag ttctaggttg      4620
     gcaaggtggg ccctcaaact gcaagggttt gattttaaaa ttgttcaccg caaagggagc      4680
     cacaatgttg ttccggacgc tctgtcacgg gtgcatgtag aggacttatc tgccttcagc      4740
     tgcgatgggt taattgacct gcagtcggat cacttcaagt ccgcagacta cttgggtctg      4800
     ataagtaaaa tcgaatccaa tcagacaccg atgccagacg tcaaagtggt agacaagttg      4860
     atttatcggc gggcggaaca cgcaccgagc gatcgaatcg cggacgactt gtgttggaaa      4920
     ttatgggtcc ctaaggaatt agtgacggaa atattgaaat tgaatcacga agagtcgttg      4980
     gctgctcata gtggcattaa taaaaccttg gagaaggtcc gacggtatta ttattggccg      5040
     aatttggtga cggatgtacg atcgttcatt aataattgtt cgatctgcaa gtgtactaag      5100
     taccccaatc gtgcgctacg cccccctctg gctccagtaa aggaaactca acgagttttt      5160
     caaaaattat tcatcgactt cttgggtccg tatcctcgaa gcaaatcggg gaatattggt      5220
     attttcgtcg tgttggatca gctgtccaaa tatccatttt tgaaggccgt taaaaagttt      5280
     accgcggaag ccataacgcg atatatggag gaagatatat tccatagttt tggggtgccc      5340
     gaggtcgtcg tgtccgacaa tggagtgcaa tttaagtccc accacttcaa ggccttgttg      5400
     aaaaaataca atgtgcagca tttttatacg gctctatacg cccctcaggc caatgcttcc      5460
     gaacgcgtaa atcggtccgt cctagccgct attaaagctt acgtcaagcc agatcaatct      5520
     gactgggatg tgcagctgag ctccatatcc tgtgccttgc gttccagtgt ccattccgct      5580
     gtgaacgaca gtccctaccg cgttgccttt ggtcagcaca tgatcaccaa cggagacacc      5640
     tatccgcttt tacgtcgatt acagctattg gaggaccgta cggtgaagtt tgatcgggaa      5700
     gactcgtttg aggtcatccg aaaaacagca cagcggacaa tgcaacagca gcaccaacga      5760
     aatgagaagc aatataatct tcgcagtcgg aacgtggctt ttaaggtcgg tcaggaggtt      5820
     taccggcgaa atttccaaca gagcaatttc gctaaagggt tcagcgcaaa gttagctcca      5880
     aattttgtga aagcgaggat aaaacgcaga cttggtcata gttattacga gctagaggac      5940
     catcaaggta gacctatcgg caagtaccac gctaaggaca taaagcagtg accctctcaa      6000
     taaggttggg gtcttttcct ccaagcgtct atcacccttt tgtgttgagg acaccaaagt      6060
     gtgatcttgg caggggggat t                                                6081
//
ID   Gypsy-15_DAzt-LTR repbase;    DNA;    INV; 2550 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2550
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 819-819 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2550 BP; 674 A; 592 C; 575 G; 709 T; 0 other;
     tgtagtggga cgcttgtcgg aaaggggtaa gcaagaattt ctttcgggtc tgaaagtagg        60
     caatgctcgc tgtgccgtac atggtacgta cctctatgcg gtagcgccct ctaggggcgg       120
     agtcaagaat gggtggggag cgagcaagaa tctcccttct ctttagccaa ccgctcgggg       180
     tgactggcga aggattgtgg caaaggaaga tccggagaac caaaattttt ttggttaact       240
     ggcacgctgg acccagtctt tctttctcct cgtgacctcc gaacagtacg gtcgtgtgaa       300
     acaaaagaca accaagaaat ccaaacattt attttgtgtg aaaatttttt ttgtgtgata       360
     agtgtcagca tcttcaccgt ggaaccagca atttttgttt gtctgacgtt ttggggtgag       420
     tcttcggcgg tcccattggg cccaagcgtg gatcattagg ctgatcccac gttggtattt       480
     tttttttgta gtacgacccc cattggccat ccaaaagggc cagagcccag taccgcatcg       540
     gccccaacgt aaacttggag agagaaaagc cgccgacaaa ttacctcccc gtcggataat       600
     tatcgtggtg ccattcccca accgggtaaa tatgtgctcg cgtagggcgg aaaagaccaa       660
     aaaaatcctc atgccttttt ttttgcaact cattttattt ctaccaattt agaattggca       720
     cccaatttag gagtttcgat tcaaattggt tcgctggcag cataaccata aagctgcaaa       780
     ccgagcttaa agccccgcca acaaccagct gatcgcgaca gtcgggcatt gaaccggggc       840
     tgcgccaggc gatagcagcg gagagtcgag ttcgggcttt acgcggcgaa aagcgacgtg       900
     ccggccgtta gcgttttaaa agaaaacccg gtcggaggag cccatccagg gtcaaaagtg       960
     acgaattcca gaacctttct cccgcgggga aaattttcgc accacgtgcg aacataaccc      1020
     cccccagtag tacccccttc tttttttttg gtaccggctc gaaggcactg tgtggtcgtc      1080
     aagcgcggtg ctccgccgcc gccctgtgta gctgggcgtt aaggctcaaa gaattaagag      1140
     tatgagtgtt tagtgtttag tgtttaatga ataattgtta tatggtaatt gaaggcgtgt      1200
     acccttgttt gtgtgcgccc atgtagtggc gaaaaacctt gacagaggta cgcccgtcca      1260
     taagtttccc ccggcacgga tctctgccgt gatcttggcc attttttttt tatccatgcc      1320
     tccctattta caaaaacaaa agttatgtta aattaaatta aaagaaaata agtcaaatat      1380
     taatcgtgca ttagccagtg aagcttttaa agctggagcg accaagcttt cgatcggtgg      1440
     tgtcacgccg aggagttagt gacacgcagc tctagctgca ggtatttgtt tttttttggg      1500
     cttttcagat gaacacacac ataccgagac gcccagcaac gaaagatctt tcgccgcggg      1560
     aacggagtgc aaagcaaata gcaaaaggaa tgtgtgagtg agtctattat tatttcttac      1620
     ttttcgcccc ccgtgtcaac tccgcgaccg tggagaagag ctctaccaga gcttttccac      1680
     cagcgccgtt cgccggccgc tgaccggccg tcaaagcttt cacagctgat ttgctttccg      1740
     caatcaacaa ttaataaata atttccgaac aaatttcgat caatggccgg ggtcatcgag      1800
     catagtggtc cgtctgatta tatagcatta tactattata tttcggctta acgaaacata      1860
     cacggttaat atcgctttat aataaaaaaa aaaagtaatt aaatttagct ataatttatt      1920
     ttgtttatct atatgatcct atatacataa ttataaataa cattatacca atataaaaaa      1980
     atttatccct ctatatagtg tccctccata catatgctgt cttattttta agcttacctt      2040
     tgttttcgtt tagttttgtt taaatacatt gttaaaaatg aaaaagtgct agaggccctt      2100
     tatttggggg aaccatgtcg agcagaaggg aaataggcta acataggaca tctcagggat      2160
     catgccgaaa tcgcgctggg cctggcatga tcatggtagg gcgggcatga cacaactccg      2220
     tgtcagcaga gatgtccgat ggcgtcggta ggccactttt ttttccctgc attttctctt      2280
     ttcttttctt tctgcaatct acccgggatc ttgccccccc cacatttcct ttcctaactc      2340
     ccaatcccct ttccctaaaa tggtacgcga gatgtaataa aataataatt tttaggagcg      2400
     aagcacgcag ctgaaaggta tcattttttt tgaaagaacc catacccata tccgaccaga      2460
     gaacagccgt cgaagcaagc gcgtactcct tagaacagct gaccgtccac ctgcttcatt      2520
     gcccgaggaa tttcttcgtt atatgctaca                                       2550
//
ID   Gypsy-15_DBi-I repbase;    DNA;    INV; 5907 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5907
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 847-847 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(287..1270,1210..1899,1859..4600,4443..4886,
FT                 4960..5877)
FT                 /product="Gypsy-15_DBi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclese H and integrase."
FT                 /translation="MANPSALPQLSEIHLNQLIGQIKELPYFDGNPAELSR
FT                 YIARVEYLLQLYPTQDARQTHIIYGAIERTIVDSAQAVIEEEKSNAWVTTK
FT                 AALIKAFKDHRPYEDIIQHIRDTPYQGSISKFVNELKLRSSKVHNKLELES
FT                 DPTERLLYTSSLNKTIKDCIERKLPDRLYNCLSKKDITTLANLKEAAMILG
FT                 HWDADPFDNYKPRRHDNRRYSGGSHQNYYYQKFNSQNYPKYNNNNSRDNNN
FT                 SNNSSNPQNSQNKNQIPTRNQGNYHEFKRNLDQGRAQNPLNFQASTSNNSP
FT                 NAPVKRQRETDSAQNRMDVNFQQTASDTESVAHMSEDGRKFSANCLGYRKC
FT                 CPYVRVMIKGKLLRAMIDTGSSINLMTKNFAENKEEEEKLKVYTINGSMEL
FT                 NKSVTLDPCKICPTKQKFYLHKFSDNYDILIGRDYLKESKAKINYEEETVM
FT                 LGDTLLYIKYGENDMEKDKTAVKCLNPPSFEKKIEKDKTALECLNPPLSND
FT                 QSFNFAINNELKECNEYRLEHLNEEEKESLKKVLFEFNDIQYKEGENLTFT
FT                 STIKHSITNQALLQVLLNIQLQTKHEDPVYRKPYKYPQTFDEEVNKQINEM
FT                 IEQGIIRKSKSPYCSPIWIVPKKSDASGKMKFRLVVDYRNLNEITINDKFP
FT                 IPRMDEILDKLGRCQYFTTIDLAKGFHQIQMEPESIAKTAFSTKHGHYEYT
FT                 RMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIIFSTSLEEHILSLK
FT                 KVFQKLRDANLKLQLDKCEFMKKETEFLGHVVTTTGIKPNPKKISAIINFP
FT                 IPKTPKEIKSFLGLCGFYRKFIPNFANIVKPMTMKLKKGATINIKDKPYVE
FT                 AFEKMKVLITSDPILIYPDFNKPFSLTTDASNMAIGAVLSQNHKPVCYASR
FT                 TLNEHEINYATIEKELLAIVWATKYFRSYLFGRSFEILSDHKPLVWLNNIK
FT                 EPNMKLQRWKIKLNEFDYQIKYLPGKENYVADALSRTKIEETMFTDNVEQD
FT                 IQDETDSNADATVHSAQEDNQNYISITEKPFNYFSRQIELIKGNEDTTEVT
FT                 HYFHKLKIKIIYKEMTETSAKEIIKEYLCTKKSAIYFHDDSDFIIFQKAYV
FT                 EIISANHLTKLVRCTTRLEDILTYTDFKEKILKRHKELLHPGIEKTSKWFR
FT                 EKYYFPDYQKLIQNIINECEICNIAKTEHRNTKMTFEXTPEIQNIREKFVM
FT                 DFYMVGNQQFLSCIDVYSKFATLVEVTGRDWLEAKRAIMKVFNEMGKPQEI
FT                 KADKDSAFMCVALHNWLNSEGVQIQITTSKNGISDIERFHKTVNEKLRIIG
FT                 SESDIENRYTKFELILYIYNHKTKHNATNQTPADIFMYAGTPDYDTQMKKS
FT                 NRIEKLNEKRHDYEIDLKYKQAPLVKSKTTNPFKKTGTLKKVDEKHFEETN
FT                 RGRKIVHYKTKFKKKKKINKSKYDNNSRPTEGNERTNETNNFLYYISNCNS
FT                 IDNRTKYYIIKQNLKRKRKLIKANMIIIPGQRKETNGPMKPIIFSIILATV
FT                 IQLTIGQSIEINPIKAQNGYLIFKTGSVEIPTNYEYHYLSVNITKTEQTFE
FT                 NLLKQAEEFNDVIQIRYLVEKLRREINGITIAKRSKRGLFNIVGSVTNICS
FT                 ELFKYDIDVINNGIEIINNLKEKGERDQQVSVLIFNLQHFTEYVEDIELGM
FT                 QMTRLGLFNPKLLKHDYLKNISHIPSEIIKSPVFEIIPYPDENNNILTENI
FT                 FEKYFLYEDKVFNKETEKIVTDECINGIIRQENTECKFTKTYKNFQINYVE
FT                 PNILLTWNIPKTLLNQNCINKEISIVGSNIVKILNCSIQLDEYTLSNSMLD
FT                 YTQSVYISNNITKLEPLSYIQTKEIIESHTRYYNVFQTITLTTFVIIIISI
FT                 LLYLWYKFKSIPRKLIVKYVTKEEPPQNTEVVNDLPNQINVEENIMLYPRL
FT                 ST"
XX
SQ   Sequence 5907 BP; 2520 A; 938 C; 900 G; 1548 T; 1 other;
     ggcgcagtcg gtaggatctc aaaaaattct ttaaaaagtc accggtactg atcaaaaaga        60
     aggataatac tatacgacta gtttatcctg atcagcgtaa attccgtgaa caaacaagga       120
     caatttgaat aaaatccaaa tcggtcaata cgcgcttaat ctaaaaaatt ataagtgcct       180
     atattgaaaa caaaaataaa ttaaaaatca aaaatccaaa tcggtcaata cgcgcttaat       240
     ctaaaattaa aagtgcctat attgaaaaca aaaagaaaac gacaaaatgg ctaatccatc       300
     agcgctacca cagctgtccg agattcattt gaatcaattg atcgggcaaa taaaggaatt       360
     gccatacttt gatggaaatc cagcagagct aagccggtat atcgccaggg ttgagtacct       420
     cctacaacta taccctactc aagatgccag acaaactcac atcatatatg gagccatcga       480
     aaggaccatt gtcgactcag cgcaagcagt catcgaagaa gaaaaatcta acgcttgggt       540
     aactacaaaa gcagctctaa tcaaggcctt caaggaccac aggccttatg aagacatcat       600
     ccagcacatc cgggacaccc cataccaagg aagcatcagt aagttcgtaa atgaacttaa       660
     gcttagatct tcaaaagtac ataataaatt agaattagag tcagacccaa cagaaagatt       720
     actttataca agttcattaa ataaaactat taaggattgt atcgagagaa aacttcctga       780
     cagattgtat aattgtttat ccaaaaaaga tattacaact cttgctaact taaaagaagc       840
     agcaatgatt ctaggccatt gggatgcaga cccattcgat aactataaac ctagacgtca       900
     tgataatcga aggtattcgg gaggttcaca tcaaaattat tattatcaaa agtttaattc       960
     tcaaaattat ccaaagtata acaataacaa ttcaagggat aataataatt caaataattc      1020
     atcaaaccct caaaattcac aaaataaaaa tcaaattccc actaggaacc aaggtaatta      1080
     tcacgagttt aagagaaacc tagatcaagg cagggcacaa aatcctttaa atttccaggc      1140
     atctacttca aataattctc ctaatgcacc tgttaaaaga caaagggaaa ctgacagtgc      1200
     acagaatagg atggacgtaa attttcagca aactgcctcg gatacagaaa gtgttgccca      1260
     tatgtcagag taatgattaa gggaaaactc cttagagcta tgatagatac agggtcatct      1320
     atcaatttaa tgacaaagaa tttcgcagaa aataaagaag aggaagaaaa actaaaagtg      1380
     tatacaataa atggatcaat ggaattgaat aaaagtgtaa cattagatcc ttgcaaaatc      1440
     tgtcctacta aacagaaatt ttatttacat aaattttctg acaattacga tattttgata      1500
     ggcagagatt atttaaaaga aagtaaggca aaaataaatt atgaggagga aacagtgatg      1560
     ttaggagaca cgttacttta tataaagtat ggagaaaatg atatggaaaa ggataagacc      1620
     gcagtaaaat gccttaatcc accatcgttt gaaaagaaaa ttgaaaagga taagaccgca      1680
     ttagaatgcc ttaatccacc cttgtcaaat gaccagtcat ttaattttgc cataaataat      1740
     gaattaaaag aatgtaatga atacaggtta gaacacttga atgaggaaga aaaagaaagt      1800
     ttaaaaaagg ttttatttga atttaatgac atccagtaca aggaaggtga aaatttgact      1860
     tttacaagta ctattaaaca ttcaattaca aaccaagcat gaagatccag tatataggaa      1920
     gccatataaa taccctcaaa cttttgatga agaagtcaac aaacaaataa atgaaatgat      1980
     tgaacaggga ataattcgta aatcaaaatc tccctattgt tcaccaatct ggatagttcc      2040
     aaaaaagagc gatgcatcag gaaaaatgaa attcagatta gtagtagact acagaaattt      2100
     aaacgaaatc actatcaatg ataaattccc aatacccaga atggatgaaa tattggacaa      2160
     attaggaaga tgtcaatatt tcacaaccat tgatttagct aaaggattcc atcaaattca      2220
     aatggaacca gaatcaatag ctaaaacggc attctcaaca aaacatggtc attacgaata      2280
     tactcgaatg ccatttggcc ttaaaaacgc ccccgctact ttccaaagat gtatgaacaa      2340
     tttattagaa gatttaatct ataaagattg tttagtatat ctagatgata ttataatttt      2400
     ttccacttca ttggaagaac acattctatc attgaagaaa gtattccaaa aactacgaga      2460
     tgccaattta aaattacaat tagataaatg cgaatttatg aaaaaggaaa ccgaattcct      2520
     aggtcacgta gtaaccacta caggtataaa accaaaccca aagaaaataa gtgccattat      2580
     aaatttcccc ataccaaaga ccccaaaaga aattaaatca tttctaggac tgtgtggatt      2640
     ttatcggaaa tttataccga atttcgcaaa tattgtaaag ccaatgacta tgaaattaaa      2700
     aaagggtgca acaattaata ttaaagacaa accatacgta gaagcatttg aaaaaatgaa      2760
     agtcttaatt acatccgacc ctattttaat ttatcccgac tttaacaaac cattttcttt      2820
     gacaacggac gcaagtaaca tggcgatagg agcagtacta tcacagaatc ataaaccagt      2880
     ttgttatgcc agcagaaccc ttaacgaaca cgagataaat tatgctacga tagaaaaaga      2940
     acttttagca atcgtatggg ctaccaaata ctttagatca tatttattcg gcaggtcttt      3000
     cgaaatatta agtgaccaca aacctttagt ttggttaaat aatatcaaag aaccaaatat      3060
     gaaattacaa agatggaaaa taaaattaaa cgaattcgac tatcagataa aatatttacc      3120
     aggaaaagag aattacgtag ccgacgcatt atctagaacc aagatagaag aaaccatgtt      3180
     tacggacaat gttgaacagg acatacaaga cgaaacagat agtaacgcag acgcaacagt      3240
     gcacagtgca caagaagaca atcaaaacta tatttctatt accgagaaac cattcaatta      3300
     tttttctcga cagattgaat tgattaaagg aaacgaagat acgacagaag tgacacacta      3360
     ttttcataaa ttaaaaatta aaattattta taaagaaatg acagaaactt cagcgaaaga      3420
     aataattaaa gaatatttat gtaccaaaaa gagtgcaatt tatttccatg acgactcaga      3480
     ttttatcata ttccagaaag cttatgtaga aattataagt gcaaatcact taacgaaact      3540
     agtgagatgt acaacaagac tcgaagatat tctgacgtac acagacttca aagaaaaaat      3600
     tctaaaacga cacaaagaac ttctacaccc aggaattgag aaaacttcca aatggttcag      3660
     agaaaaatat tatttccctg actatcaaaa attaattcaa aatataataa atgaatgtga      3720
     aatttgtaat attgctaaaa cagaacatag aaatactaaa atgacatttg aamttacccc      3780
     agaaattcag aatataaggg aaaaatttgt tatggatttt tatatggtag gcaaccaaca      3840
     gtttttatca tgcatagacg tatattccaa atttgctact ttagtggaag taacaggtag      3900
     agattggtta gaagccaaaa gagcaattat gaaagtattc aatgaaatgg gaaaacccca      3960
     agaaattaaa gcagacaaag attcagcatt tatgtgcgta gctttacata attggttaaa      4020
     ctcagaagga gttcaaattc aaataacaac tagtaaaaat ggtatttcag atatagaaag      4080
     attccacaaa acagtaaatg aaaagttaag aatcatagga agtgaatcag atattgagaa      4140
     tagatatacc aaattcgaac taatccttta tatttacaat cataaaacca aacataatgc      4200
     tacaaatcag acaccagctg atatttttat gtatgcagga acaccagatt acgacacaca      4260
     aatgaagaaa agtaacagaa ttgaaaaatt aaatgaaaaa cgccatgact atgagataga      4320
     cctaaaatat aaacaagcac cattagtgaa gtctaagact acaaacccat ttaaaaaaac      4380
     aggtacttta aagaaagttg acgaaaaaca ttttgaagaa actaacaggg gaagaaaaat      4440
     agtacattat aaaacaaaat ttaaaaagaa aaagaaaatt aataaaagca aatatgataa      4500
     taattccagg ccaacggaag gaaacgaacg gaccaatgaa accaataatt ttctctatta      4560
     tattagcaac tgtaattcaa ttgacaatcg gacaaagtat tgagataaat cctataaaag      4620
     ctcagaatgg atacctcata tttaaaacag gatcagtaga aatcccaact aactacgaat      4680
     accattattt aagcgtaaat ataacgaaaa ccgaacaaac atttgaaaac cttttgaaac      4740
     aagccgaaga attcaatgat gtcattcaaa tccgatattt agtagagaaa cttagaagag      4800
     aaattaatgg aattacaata gctaaacgca gtaaaagagg tttatttaat attgtaggat      4860
     ctgttacaaa tatctgttcg gaactctaga tcaagatgat aaagatgaaa tggaacagaa      4920
     aattaataat ttaatagaca ctagtgccca gaatactgat ttaaatatga tatagatgtt      4980
     ataaacaatg gaattgaaat aattaacaac cttaaagaaa aaggagaaag agatcaacag      5040
     gtcagcgtat taatattcaa tttacaacat ttcaccgaat atgtagaaga catagaacta      5100
     ggaatgcaaa tgacaaggtt agggttattc aatccaaaat tgctaaaaca tgattatttg      5160
     aaaaacattt cccatatccc ttcagagata atcaaatctc ctgtttttga aattattcct      5220
     tatcctgacg aaaataataa tattctaaca gaaaatatat ttgaaaaata tttcctttat      5280
     gaagacaaag tatttaataa agaaacagag aaaatagtaa ctgacgaatg cataaacgga      5340
     ataattagac aagaaaatac cgaatgcaaa ttcactaaaa cttataaaaa tttccaaatt      5400
     aattatgttg aacccaatat tttattgaca tggaacatcc ctaaaacatt gctaaatcaa      5460
     aattgcatta ataaagaaat ttctattgtc ggaagtaata tcgttaaaat ccttaattgt      5520
     tcaatacaat tagatgaata cactctttca aactcaatgt tagattacac acagagcgtt      5580
     tatataagta ataatataac aaaattggaa ccattgtcat atatccaaac aaaagaaata      5640
     attgaatcac atacaagata ttataatgta tttcaaacaa ttactttaac aacttttgta      5700
     attattatta taagcatttt attgtattta tggtataaat ttaagagcat accaagaaaa      5760
     cttattgtaa aatatgtaac aaaagaagaa ccaccacaga atacagaagt tgtaaacgat      5820
     ctacctaatc aaattaacgt agaagaaaac ataatgttat acccaagatt atccacctga      5880
     ggacaggcta aattcaacgg atggggg                                          5907
//
ID   Gypsy-15_DBi-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-539
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 848-848 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 539 BP; 210 A; 111 C; 85 G; 133 T; 0 other;
     agtgacatat ccatagttca acgtactcct atgcacatgt ctacacaccc acacatacac        60
     acagtcaccc tcgagacacc ctttaagaaa taataatcaa gtcaccctct aagaaataag       120
     aatccaaatt taattgtaaa caagccaatg gaaaattacc aagctataaa caagccacag       180
     gaaaattacc atgaaacaaa aacctcagct tgtagactaa acaattagaa cgagccgctg       240
     ttcagactat cggcacgttc ccacaattca ggatactcag atttcgggac ccaagtctgg       300
     agtctaaagt ccaaagttag agagtcactc aatagcaaca aaacccactc acaaaaagct       360
     ctaaagctca aaaccgaggt atgatcgtaa atgaagtagg agttagagag cgagttcagt       420
     ttgagatttg tcaatagcaa gtcggtgttc ttcaaatata aaaattgtaa ccagtttaag       480
     aataagaaat taaataaagt ttttttttta acttaaactt atggtgcaag aatttaatt        539
//
ID   Gypsy-15_DBp-I repbase;    DNA;    INV; 5085 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5085
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 679-679 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(950..1798,1579..2256,2124..3569,3563..5005)
FT                 /product="Gypsy-15_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="LDKVGHTLNSWKLRFSGNPEGLSVDNFIYRVEALTRQ
FT                 TLEGNFSILSSNASLLFEGKAREFYWRYHKNTQELRWDFLCTALRRQFRDA
FT                 RTDLDIREAIRDRKQREREGFDSFYNAIEELMDHLDMPLTEMEVVEILKRN
FT                 LRPEIRHEILNIPVRSVENLRAICRRRENFLEDVRKSQGYQKVVPFRKQVS
FT                 ELVEEMMDAEEFAEGEVNGEVCAMALICWNCRKEGHRHKQCRMKRKVFCFG
FT                 CGAPNNYHHTCPNCLKNGKANTFSGRQQASVPKDKSTNGDLNSLCNGANML
FT                 ELSQRRPSPQAMSNEAQSXLLRLWRPKQLPPYLSELFKKRESEHFQRSTAG
FT                 KCSEGQVDKRGPELVCPVQTLEDPARSPTSDPIKESWPNLGVPQVAGLKPN
FT                 VKEKGVSRNTKRIRSYWNNVKTINTIRFKNNDNRPYAEVMLLDRVVVGLLD
FT                 TGAAINVIGGKLAEQLIRSKVPFKRVTTVATTADGQKQVVVGKLQTAVKYK
FT                 EETKDLEFHIIHPSSVQKSNNGCYHGRWSKTGRSREASNSRKVQGRNQGSR
FT                 VPYHPSLNQDLYLGITFWTAFSLLPSSMQISEIASNSHDLTXGQRCSLSEV
FT                 IGKFPSFASSGLGKTTFISHEIDVGDAKPIKQRHFPVSPAVEKLLYQEIDR
FT                 MLEMGVIEESQSAWSSPVVLVQKPGKVRLCLDSRKVNAATKKDAYPLPQID
FT                 GILSRLPKAMYISSLDLKDAYWQIPLDPKSRDKTAFTIPGKPLYQFKVMPF
FT                 GLTNASQTMTRLMDKVIPPELRNEVFVYLDDLLVVSDTFETHMKVLSVVAE
FT                 QMKLAGLTLNVEKSKFCVRTVKYLGHIVGEGTIRTDPEKISAMADFPLPQN
FT                 LKSLRRFLGMVGWYRKFINNFASVSAPLTDLLKPRKKFEMTPEGEKAFFLL
FT                 KDMLCSAPVLRSADFTRPFFVQCDASKSGVGGVLVQKTDQSDEYPIAFVSK
FT                 KLNKAQRNYSVTEQECLAAIISIKRFRPYIEGHEFTVYVITDHASLKWLMS
FT                 QTDLHSRLARWALKLQGFTFKIEHRSGKMNVVPDALSRVNEAELAAIEARH
FT                 GLLIDLQAPEFKSAKYLEIAEKVKANQNQLPDLKVVDGLVYRRTEHATGDQ
FT                 MHDIFNWKLWIPEELVAEVLRKNHDEPLASHGGIHKTLERVRRYYYWPGLV
FT                 NDVRSYTQACEVCKSTKASNKTQRPPMGVAPVSERFFQRLYIDFLGPYPRS
FT                 RSGNIGIFIVLDHYSKFVFLKAVKKFTADVVTKHLQQDLFHTFGVPETIVS
FT                 DNGTQFRAETFQKLLRQYSVSHTLTAAYSPQSNASERVNRSVIAAIRSYVR
FT                 PDQKDWDEQLSSICCALRTAVHSALGTSPYYMAFGQNFVSSGSSYKLLRAL
FT                 GLLEDRSLALSKEDSLEIVRKKACEVLRKQNEKNERQYNLRAREVAYKEGQ
FT                 EIFYRNFKQSNFAAGYSAKLGPAFIKARVRKRVGNSCYELEDLQGHLLGKF
FT                 RAKDMRQ"
XX
SQ   Sequence 5085 BP; 1510 A; 1003 C; 1240 G; 1320 T; 12 other;
     acgaaataat gggaaaacwa agtttttagc gmagwgtwcg aagcttggat tataggcaaa        60
     agcgatcgmt cgsaatcgcc taaccgctgt cggaaagcmg caacagstgt taggcgccac       120
     tcgcgtcttt tttattcttc ttttcttttc cttcgcatgc aggtcttatc tcaaggggtg       180
     tagttatgct cagggtcaat tattttatga tatatttgtc gtttgcgatt ttagtttttt       240
     cttggtcttt gccgtgattt aaaaaaaaga agctatttta ttattattgc ataaaaaaaa       300
     caaaaaaaac acattaaaac aataacatta ttattaacta tttattttag ataaccaaaa       360
     aaagtctttt tcttaaatca ggcgatcaca gcagttggtt tgttccaacg gttaggtcaa       420
     accgagttag gctaggtcgg taatggattg gtaagttagt ttaagtgacc aaaaaaatca       480
     gtcggtccca gctatctgtt ttaaatactt ttgtcatttt cggtcgttcc ttgcgaaagt       540
     cataagttag ctagtcatgc cagatcccta agaaaatttg gcatcaaaaa tgccctcgtg       600
     cgagtctact ttagatgtct gtaacactgt acaaaaccaa aatttggtca tgcatttccg       660
     aacaatcgct gcatggccag gctatgccga aagtaaaaca acgtgtccga cttgtacaca       720
     gtatgcttcg agaaatttga tactccatct caaaacacta gctcgactag agggcagacg       780
     ttagattcta cgcccagtgg ctcgtcaggg gcagcagcgc tgggattggc tcagaaagga       840
     cctgcaagtc catgcagaat tagttgttga cagaaagaat ggctaggttg attgaagcca       900
     atcttccggc tatcagtttc atcggtagaa gtttccaacc cggatgtagt tggacaaagt       960
     aggccatact ttaaatagtt ggaaattgag gtttagtggt aatccggaag gtcttagtgt      1020
     cgataatttt atttaccgag tagaagccct cactagacaa acgctggaag gtaatttttc      1080
     aattctaagc agcaatgcta gccttctatt cgaagggaaa gcgagagaat tctactggag      1140
     gtaccacaaa aatacccagg aattgcgttg ggattttctt tgtactgcgc taaggaggca      1200
     attcagagat gcgcggacgg acttagatat ccgagaagcc attcgagata ggaagcagcg      1260
     ggaaagggaa ggattcgatt cgttctataa tgcaatagag gagttaatgg accacctgga      1320
     catgccacta accgaaatgg aagtggtgga aattttaaag agaaatttaa ggccagagat      1380
     aaggcatgaa attctgaaca ttccagtccg gtcggtagaa aatttaaggg caatatgccg      1440
     gcgcagggaa aatttcttag aagacgtccg aaaatcccag ggatatcaga aggtggtgcc      1500
     gttccgcaag caagtttccg agttggttga ggagatgatg gatgctgagg aattcgcaga      1560
     aggcgaagtg aatggtgaag tctgtgcaat ggcgctaata tgctggaact gtcgcaaaga      1620
     aggccatcgc cacaagcaat gtcgaatgaa gcgcaaagtk ttttgcttcg gctgtggcgc      1680
     cccaaacaac taccaccata cttgtccgaa ttgtttaaaa aacgggaaag cgaacacttt      1740
     cagcggtcga cagcaggcaa gtgttccgaa ggacaagtcg acaaacgggg acctgaacta      1800
     gtatgtccag ttcagacttt agaagatcct gcgagatcac ctacatctga tccgatcaag      1860
     gaatcttggc caaatctggg ggttccacaa gtcgcaggtt taaaaccgaa cgtgaaggaa      1920
     aaaggagtgt ctagaaatac taaaagaata aggtcctatt ggaataatgt taaaactata      1980
     aatacaatta ggttcaaaaa caatgataat cgtccgtatg ccgaagtcat gctcctagat      2040
     agggtagtag ttggtctatt agacacgggg gcggctatta atgtgattgg ggggaaattg      2100
     gcagaacagt taatacgaag taaagttccg ttcaaaagag taacaacggt tgctaccacg      2160
     gcagatggtc aaaaacaggt cgtagtaggg aagcttcaaa cagccgtaaa gtacaaggaa      2220
     gaaaccaagg atctcgagtt ccatatcatc catccctgaa tcaggatttg tacttgggta      2280
     tcacgttctg gacagcattt agtttgctgc catcttccat gcaaatatct gagatagcgt      2340
     caaattcaca tgatctgacg gakggtcagc gatgcagcct aagcgaagta atcgggaaat      2400
     ttccttcgtt tgcctcttcg ggattaggaa agacaacttt catttctcac gaaatcgacg      2460
     taggggatgc gaagccaatc aaacaacgtc actttccggt gtcaccggcg gtcgaaaagc      2520
     ttctttacca agaaatcgat cgaatgttgg aaatgggggt gattgaggag tcccagagtg      2580
     cgtggtcttc gcccgttgtc ctagtacaaa aacccgggaa agtamggttg tgtttggaca      2640
     gtcgtaaagt caacgctgct accaaaaagg atgcttatcc tttaccccaa atcgatggaa      2700
     ttttatctcg acttccaaag gcaatgtata tctccagcct cgatttgaaa gatgcctatt      2760
     ggcagatccc gttggaccca aaatctcggg ataagacagc ctttacaatt ccgggaaaac      2820
     cgttgtatca atttaaagtg atgccattcg gtttgaccaa cgcgtctcaa acgatgactc      2880
     ggttaatgga caaagttatc ccgcctgagc ttaggaacga ggtctttgtc tatttagacg      2940
     atctcttggt cgtctcagat acmtttgaaa cccacatgaa ggttctgagt gtggtggccg      3000
     agcaaatgaa actagctgga ctcacactaa acgtggagaa aagtaaattt tgcgtgagaa      3060
     cggtaaaata tcttgggcat atcgtgggag aagggactat acgaactgat ccagagaaaa      3120
     tatcggcaat ggcagacttt ccacttcccc aaaatttaaa atctcttcgg cgttttcttg      3180
     gcatggtggg gtggtatcgc aaattcatca acaacttcgc atcagtatcg gctccactta      3240
     cagacttgtt gaagccaaga aagaaattcg aaatgactcc ggagggagag aaggcgtttt      3300
     tcctgcttaa ggatatgctt tgctccgctc cagtgttacg cagcgcggat ttcaccagac      3360
     ccttcttcgt gcaatgcgat gcaagtaagt ctggagtggg aggcgtgctg gtgcaaaaga      3420
     cagatcagag tgacgagtat cccattgctt ttgtatcaaa aaaattaaac aaagcccaaa      3480
     ggaattattc ggtcactgaa caggagtgtc tcgcggccat aattagcatc aagcgtttcc      3540
     ggccgtatat agaaggccat gagtttacgt gattacggat catgcttcac tcaaatggct      3600
     catgagtcag acggatctcc actcgcgact agctcgatgg gccttaaagt tgcaaggatt      3660
     cacgttcaaa attgaacaca gaagtgggaa aatgaatgtg gtaccggatg ctttgtctag      3720
     ggtcaatgag gctgaattag ctgctataga ggcgagacac gggcttttaa tagatctgca      3780
     agcaccggaa ttcaagtcgg ccaagtattt agaaatcgca gagaaagtca aggccaatca      3840
     aaatcaattg ccagatttga aagtggtcga tggactcgtt tatcggagaa cagaacatgc      3900
     aactggagat cagatgcatg atattttcaa ttggaaatta tggattcccg aggagctagt      3960
     tgccgaggtt ctaagaaaaa atcatgacga gcctctagct tctcatggag gtattcacaa      4020
     aacgttggaa agggtgaggc gttattacta ttggccaggg ttagtcaacg acgtgaggtc      4080
     gtatacgcaa gcttgtgaag tttgcaaatc caccaaggcc tcaaataaaa ctcaacgacc      4140
     tccaatgggt gtggctcctg tatcagagcg atttttccag cgtctttata tagattttct      4200
     cggtccgtac cctcggtctc ggagtgggaa catcggaata tttatagtgt tggaccatta      4260
     ctccaagttt gtatttttaa aagcggtaaa aaaattcacg gcagacgtag tcactaaaca      4320
     tctccagcaa gatcttttcc acactttcgg cgtaccggaa accattgtat ccgataatgg      4380
     aacgcagttc agggctgaga cttttcagaa attgctaagg caatattctg tttcacacac      4440
     tttgaccgcg gcttattcgc cccagtcgaa cgcctcggag agggttaacc gatcagtcat      4500
     cgcagcgata agatcttatg ttagacctga tcaaaaagat tgggacgagc aactcagcag      4560
     tatttgctgc gctctccgta ctgcggttca ttcggcgttg ggtactagcc cttattatat      4620
     ggcattcggc cagaatttcg tctcctcagg gtcatcctat aaacttttga gagctttagg      4680
     gctgttggag gacaggtctt tggcgctttc aaaagaggac tctttggaaa tagtccggaa      4740
     gaaggcttgc gaggttctga gaaaacagaa tgagaagaat gagcgtcagt ataacctgcg      4800
     ggctagagag gtggcttata aagaagggca agagatattt tacagaaatt ttaagcagag      4860
     taattttgcg gccggatata gtgccaaatt aggcccagca ttcataaaag ctagagtgcg      4920
     caaaagagtt ggaaactcat gctatgagtt agaggatctg caaggccatc tcctgggaaa      4980
     atttcgtgca aaggatatga gacagtagcc aaggcagata caagctgttg gtggaatctg      5040
     tcttagggtg tcaaacccca agccagattc ttggcggagg ggctt                      5085
//
ID   Gypsy-15_DBp-LTR repbase;    DNA;    INV; 2170 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2170
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 680-680 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2170 BP; 640 A; 427 C; 532 G; 566 T; 5 other;
     tgtaacgctt gtatctttca aaagaaaggt agttgggaaa ggtgcgccat ctaggagaga        60
     agtttcagac kagaaagggg cacagagaga ttaggaggag tgcaaccggg taagatggca       120
     gaattttccg ttggggcakt gtctctccgg gcaaaggcca tggagggatc agcgccaaat       180
     tttggcgtcg gggcacttat tccctcagtg cgtctcctct gggctggtct agtggatttc       240
     tctcatctgt tagagttctt ttttatgaag tgaaaaaaaa aaaacgaacg acaacgaccg       300
     aaggcgcttg tgtccaaggg caaaaaggag cccaccggtt tgtggccaag agcgaatccg       360
     tcgaggtaag aaagggcgac gggtcgttag gagttcttgg taaatttttt ctcttgcgtt       420
     agggtcggca acaaggcaaa cagctaccgg agggaaattc ggaagcccac ggaagccacg       480
     gaatttcgga agagttccag tkggttccag aacatcccca agaacgcccc aagaccgaaa       540
     agcggaggga ggaagaaaag actaactaag aaaaagactc ggtcagcggg tttgagttct       600
     actcggtagg cccaccatcg aacctttggc tcgagcgggc agttgagttc caaccgcgct       660
     tggcagagcg tatttcctcg ccgcgatctt ggaaaaacga gaaaaagtac aaattttccg       720
     gcgggaaagc gacccgagtg cgacccgggg tacatcggag gcgtccagcg accccggcgc       780
     ggtgaaccgg agcaatttca aaccagtgac cagggaaaac cagtgccgcc gaatccacgt       840
     gggatttcgg catgtagtta ggtgttagtt taagtagtgt taattctatt agtgataagt       900
     tataagtttt gtggtggctt atggccaaac ggatgcagag cgggaaaagg cacatggttt       960
     aaaaagtgga aaattggcca agcgaggttc gaggtgttag tggatcacac ctaacctttt      1020
     aaaaaaagaa aaaaagagaa aagaaaaaaa gaagaagaag aattttagaa taatgatttc      1080
     cgtggcccca atagtgaatt ttccttgttt ttttgtaagt gwtaatctaa aattttcagc      1140
     cactccagtc cgagaaagcg ctttcgacga tggatgcgcc aatgcagggg tgagtgagaa      1200
     aatacctata tcatactcaa ttttaatcgt taaaagtaaa kgaaggagat ataaccatca      1260
     tacgacaaag caaggaatat ttgctaagcc taatggccaa tttaaatttt taaaataaaa      1320
     aaaaaaaaaa tcttagaata aatggttagt ccgtcagccc aacccaatcg aaccatttcg      1380
     ctagcgaatt tccactcatg ttcgagcgca tgttcgttta catgttcgat gtgatcgtca      1440
     tgtaacttta ttgtttttat ataaaagtct tgctcgtgtc cgtttttgtt ctttattatt      1500
     ttttttgaaa atccaattaa tttaatcgtt tagtcttaat tcctttaatt ttcttttcgc      1560
     cactcatgaa tgtttcgttt attatattta tttattattt agattttacc ccatagaata      1620
     ataatcaagg ggaatgtacg ttttaggacc caagcgaatt ttttatatat tatttcttag      1680
     agtttaaata aatattataa tgtactaaaa acccgtgttt tgacccgaca taacagtccc      1740
     ccttgagacc gtcgaagcag gggctatcgc ggacataatg ggctttgacc cagggattag      1800
     atagccaaag gtagggtggg caaactaagt ctcgcaacat cggaggctta ggtgctcggc      1860
     ggaaggacgg atgcgaagga accccttttc tttttatatg tagattcccg gaagtagttc      1920
     actcgatggc cgagatgagt agccgacctc ttcgcagaga agcttgcccc atgcacgcaa      1980
     atctttatgg gataatgagt aaaaggcacc tcggggggcg tggcaagaac accactccaa      2040
     tagctggcga gccagagccg gaagaaattt gattattgcg tgcggcaccc ctcccgaaaa      2100
     tgacacctcg cctggagctg ggatttcgta tcttatacga ttttccagta gcccaatcat      2160
     tattgttata                                                             2170
//
ID   Gypsy-15_DEl-I repbase;    DNA;    INV; 5861 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DEl_;
KW   Gypsy-15_DEl-LTR; Gypsy-15_DEl-I.
XX
NM   Gypsy-15_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5861
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 538-538 (2012).
XX
RN   [2]
RP   1-5861
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   Positions [4026-4346] - Integrase core
CC   LTRs are 92% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1301
FT                 /product="Gypsy-15_DEl-I_1p"
FT                 /translation="MEMPSTSTAAAATAAKATQILTDVAMNHFLLQLKQIN
FT                 KFNGDPLYLALFIKEVDELVYHYPTTSEAQHQIIQAAIRNLLIGRARTLLM
FT                 RNIPQDWKELRTLLISEYNSATPPHRMIMELRETKYKNNLRRFVEELEEQT
FT                 SRICCKLSLDNNPSNTVLVSRTLNDTLAEVIREKLPVQTYITLSKFDISTP
FT                 LKLKQAAQAVGLFVDKPLNTRSYTSQNSNDDDEYQYFRSARNFNPNNQSDN
FT                 SQREKIQNNNYQNRYNNNQQRQNKFDSNRNWGNNSSYNNNSSGNQYYPRSF
FT                 QNNQVQNAQTTQSTNIPQKRARTSDSGQQRRTEPMDTSENFQTIASEETPP
FT                 Q"
FT   CDS           1262..4549
FT                 /product="Gypsy-15_DEl-I_2p"
FT                 /translation="KFSDNSLGRNTTAIKIKIDNKLCLCLIDTGSSINLIN
FT                 ENFLKYPTKNISTKVQTIGESVTLEKYIEFSIPKLFSSKQTFFLKNFSNHY
FT                 DILIGRKILKETSAKIDFMRNTIILNNYEFPMINITEERNQTFSSITNDDE
FT                 YIYAMQTDLTNNYLRDDHLNNEEKTELHYLMSKYFDIQYREGDNLTFTNEI
FT                 KHIIKTKHEEPIYRKPYSYPYIYDTEVEKQIEEMINQGIIRKSKSPYCSPI
FT                 VMVPKKKDASGIPKFRMAIDYRGLNEITINDKFPIPNMDEILDKLGKCQYF
FT                 TTLDLAKGFHQIEMDPGSIQKTAFSTKKGHYEYTRMPFGLKNAPATFQRCM
FT                 NNILYDIIGTHCLVYLDDIVIFSTSLQEHIQSLKKVFERLRRSNLKLQLDK
FT                 CEFMKRETEFLGHIITTEGIKANPNKIQAIQDFKIPNSPKQIKSFLGLCGF
FT                 YRKFIKDFAKIAKPMTLCLKKGAKINVKDPTYNEAFEKLKTLISNDPILTY
FT                 PDFEKKFDLTTDASNYALGAVLSQEGKPICFASRTLNEHELNYAAIEKELL
FT                 AIVWATKYFRPYLFGRSFKICSDHKPLVWLHNIKEPNMKLQRWKIKLREFD
FT                 YEIKYIKGKENHVADALSRITKKETKDKKFEEVFQNDDELETTAATVHSAQ
FT                 EDNGNCIQITERPINVFNHQLIFEKGNKDTNELTHYFNKTINKIIYSDMTD
FT                 RLAKDIIIKFICGHNFVMFINNDEDFAIFQRAYMDLIKPNTGTKLMKTSVI
FT                 LPNLSTYADFHEKILEIHEKTIHQGIKKTYDDFKTKYYFPDAQKLIQNIIN
FT                 KCEACNLCKAEHRKVALPFEKTPETQNIRDKYVIDYYFIDQRKFLTCIDIH
FT                 SKFISIIETKTTDWIESKKALLKIFNMIGKPKTIKMDQDPGLVSKSLQNWL
FT                 QKENINIEITSSKNGIADIERVHKTINEKLRIINTLSDAEDKLMNIEKATY
FT                 VYNHEITHDATGKTPAQIFLYGMEPSKNMQKQKEHKIDKINKNREEHEVDL
FT                 RYTKVEKDMKRKAKLVNPFKKTGALEQKDEKHWQETNRGHKVIKHISKFKK
FT                 AKAQNLSNHSRESDSTDSDLENDLDNDVDECNIDNSSTN"
FT   CDS           4497..5858
FT                 /product="Gypsy-15_DEl-I_3p"
FT                 /translation="MILIMTWTNVTLTTAQQISITPITSNNGYLLLNTGIV
FT                 KIPLSYEHHMIQINQTKILETYQDFMKYENKFNYVPDIALALKQLKHEIKG
FT                 IISTQRQKRGLFNIVGTAYKYLFGTLTEDDKKELEDKLENLQDQVIENKDF
FT                 NEIVTVINKQSEDIKRLVKDEEEMDALHIFRYSLNIFLEYIEDLQMGLQLT
FT                 RIGIFNPKILKHEELDDIDEEKLLAIKTSAWISSQTKDTFILVHIPTSFKE
FT                 TQKYRIIKYPDNIGRQIDINDNFEYFVTDKNIVFYLENTPSLDQKFIITDQ
FT                 CISQILTNQLANCQHTFVSENESIKYIEPNIIITYNLSKTQIKQDCEIFNK
FT                 TIQGNNIIQLSQCTLEIRNIKFTTSKIINEYKIILSSTNVTLYEPIPLLKI
FT                 KKSISYQEKQETVYKCIVFTILIIIVLTITTYIIFTYRRLANKKEIFVRFN
FT                 KDVECSKGG"
XX
SQ   Sequence 5861 BP; 2485 A; 963 C; 824 G; 1589 T; 0 other;
     ggcgcagccg gtaggataca agtaatatcc tcgcgagtga ctacctaaaa aggacttcaa        60
     aaatcacttc gtgaaaataa atttatttgt atccgcaaaa cgaacttact taaatattgt       120
     gaaaataaaa caacaacatt agtcaaatca cgaatgagga tttctaatgt ctaaattcag       180
     cgataataaa tctaataact gatatatttc gtgtaaacaa aattttttta aaaaaaaaaa       240
     aaaaaaaaaa attttaataa actgtaaaaa tggaaatgcc atcaacatca acagcagccg       300
     cagccacagc cgcaaaagca acacaaattc ttacagacgt ggccatgaac cattttcttc       360
     tgcaacttaa gcagataaac aaatttaatg gagacccact ctacttggct ctcttcataa       420
     aggaagttga cgaactagtt taccattatc cgacaacatc agaagcccaa catcaaatta       480
     tacaagcagc catccgaaac cttctaatag gacgagcccg aacattgttg atgagaaata       540
     taccacagga ctggaaggaa ttaaggactt tacttatcag cgaatacaac agcgcaacac       600
     ctccacatcg gatgattatg gaattacgtg agactaaata taaaaataat ttacgtagat       660
     ttgtcgaaga attagaagaa caaacaagta gaatatgttg taaactcagc ttagataaca       720
     atccatcaaa cacggtttta gtttcaagaa ctttgaatga tacattagct gaagtgattc       780
     gtgaaaaatt gccagttcaa acatacatta cgttgagcaa atttgacata tcaactcctc       840
     tcaaattaaa acaagctgcc caagctgtag gattgtttgt agataaacct ttaaataccc       900
     gctcgtatac atcccaaaac tctaatgatg acgacgaata tcaatacttt agatcagcaa       960
     gaaactttaa cccaaataat cagtcagata atagtcaaag agaaaaaatc caaaataata      1020
     actaccaaaa tcgatataac aacaatcaac agagacagaa caagttcgac tcaaatagga      1080
     actggggtaa taatagcagc tataataata attcttctgg caatcaatat tatcctagat      1140
     cttttcaaaa taatcaagta caaaatgccc agactactca aagtactaat attccccaaa      1200
     aacgtgcccg aacctcagac tcaggtcaac aacgtagaac tgagccaatg gacacaagtg      1260
     aaaattttca gacaatagcc tcggaagaaa caccaccgca ataaaaatta aaattgataa      1320
     caaactatgc ctctgtctta ttgatacagg ctcaagcata aatttgataa acgaaaactt      1380
     tttgaaatat ccaactaaaa atatttcgac aaaagtccaa acgataggag aatctgtaac      1440
     tttagaaaaa tatatcgaat ttagcatccc aaaattattt tcatccaagc aaacattttt      1500
     tttaaaaaac ttttcaaatc attatgatat tctcatagga agaaaaattc taaaagaaac      1560
     ctcagccaaa attgatttca tgagaaatac tattattcta aataattacg aattcccaat      1620
     gataaatata acagaggaac ggaatcaaac tttttcaagt ataacaaacg atgacgaata      1680
     tatttatgcc atgcaaacag acttaacaaa taattattta agagacgatc acttaaataa      1740
     tgaagaaaaa actgaacttc attatttaat gtccaagtat tttgatattc agtatcgcga      1800
     aggtgacaat ttgactttca cgaacgaaat caaacacata ataaaaacaa aacatgaaga      1860
     accgatttat aggaaaccat atagttatcc gtacatttat gacacagaag tagaaaaaca      1920
     aattgaggaa atgataaatc aaggtattat cagaaaatca aaatctcctt attgtagtcc      1980
     tattgtaatg gtaccaaaga aaaaggatgc atcgggcatt cccaaatttc gtatggccat      2040
     tgattacaga ggactcaatg aaataaccat aaatgacaaa tttcctattc caaacatgga      2100
     tgaaatttta gataaattag gtaaatgtca atactttaca acattagacc tagctaaagg      2160
     attccatcaa attgaaatgg acccaggatc tatacaaaaa actgcatttt ccaccaagaa      2220
     aggtcactat gagtatacta ggatgccatt tggtctaaaa aatgccccag cgacatttca      2280
     gcgttgcatg aataatattt tatacgacat aataggtacc cattgtcttg tgtatttgga      2340
     cgatattgtc atattttcaa cctcattgca agagcatatc caatctctta aaaaagtatt      2400
     cgaacgtctt cgcagatcaa atcttaaact gcaattagat aaatgtgagt ttatgaaacg      2460
     agaaactgaa tttttaggac atataattac aactgaagga atcaaagcaa atccaaataa      2520
     gattcaagct attcaagatt ttaaaattcc aaactctccg aaacaaataa aatcattttt      2580
     aggcctttgc ggattttatc gcaaattcat aaaagatttc gcaaaaatcg caaaaccaat      2640
     gactctttgt ttaaagaaag gagccaaaat aaatgttaaa gatccaactt ataacgaagc      2700
     atttgaaaaa ttaaaaactc taataagtaa cgacccaatt ctcacatatc cagatttcga      2760
     aaaaaagttt gatttaacta cagatgcaag caattatgca ttaggtgctg ttttatctca      2820
     agaaggtaag cctatttgtt tcgccagtag aactttaaat gaacatgagt taaattacgc      2880
     agctattgaa aaagaattac tagctatagt atgggcaacc aaatatttcc gcccttatct      2940
     ttttggaaga agttttaaaa tatgctcaga ccataaaccg cttgtttggt tacataatat      3000
     aaaagaacct aatatgaagt tacaacgttg gaaaattaaa cttagagagt ttgattatga      3060
     aataaaatac attaaaggaa aagagaatca cgtagcagat gctttatcaa gaattacaaa      3120
     aaaggaaact aaagataaaa aatttgaaga agtttttcaa aatgatgatg aattagaaac      3180
     tactgcagca acagtgcata gtgcacaaga agataatggc aattgcatac agatcacaga      3240
     acgacctatt aacgttttta atcaccaact aatatttgaa aaaggaaata aagacactaa      3300
     cgaacttact cactacttta acaaaactat taataaaata atttacagtg acatgactga      3360
     ccgtttagca aaagatataa ttataaaatt catatgtgga cacaattttg ttatgttcat      3420
     taataatgac gaagactttg ctatctttca acgagcctat atggatttaa ttaaaccaaa      3480
     cactggtaca aaattaatga aaacttcagt aatacttccc aacttgtcca catatgcaga      3540
     cttccacgaa aaaatattag aaatacacga aaagacgata caccaaggca ttaaaaagac      3600
     gtatgacgat tttaaaacta aatactattt cccagacgca caaaaactta ttcaaaacat      3660
     aataaataaa tgcgaggcct gtaatttatg caaagcagag cacagaaaag ttgcactccc      3720
     ttttgaaaag actcctgaaa ctcaaaatat tcgtgacaaa tatgttattg actattattt      3780
     tattgaccaa cgtaaatttt tgacatgtat tgacattcat tcaaaattca tttctatcat      3840
     agaaacaaaa accacagact ggattgaaag taaaaaagca ttactcaaaa tttttaatat      3900
     gataggtaaa ccgaaaacta ttaaaatgga tcaagatccc ggtctagtat ccaaatcttt      3960
     acaaaactgg ctacagaaag aaaatatcaa tattgaaatc actagtagta aaaacggtat      4020
     agctgacata gaaagggttc ataaaacaat taacgaaaaa cttagaatca taaatacact      4080
     ctcagatgct gaagacaaat taatgaatat agaaaaagca acttatgtct ataatcacga      4140
     aataacccat gatgccactg gtaaaacccc tgctcaaatc tttctttatg gtatggaacc      4200
     gagtaaaaat atgcaaaaac aaaaagaaca taaaatagat aaaattaata aaaatcgtga      4260
     ggaacatgaa gtagatctta gatatactaa agttgaaaaa gatatgaaac gcaaagcgaa      4320
     attagtaaac ccattcaaaa agacaggagc attagaacag aaagacgaaa agcattggca      4380
     agaaactaat aggggtcata aagtaataaa gcacataagt aaatttaaaa aagctaaagc      4440
     gcaaaatctc tctaatcatt ccagggaatc tgacagtact gactctgatc ttgaaaatga      4500
     tcttgataat gacgtggacg aatgtaacat tgacaacagc tcaacaaatt agtattacac      4560
     ctatcacttc aaacaacggt tatttacttc tgaacacagg gattgtaaaa atacctttaa      4620
     gttacgaaca tcatatgata cagattaatc aaacaaaaat attagaaaca taccaggact      4680
     ttatgaaata cgaaaacaag tttaattacg taccagatat tgccttagca ctaaaacaac      4740
     taaaacatga aatcaaggga attatttcta cacaaagaca aaaacgagga ttatttaata      4800
     ttgtaggaac tgcttataaa tacttatttg gaacattaac agaagacgat aaaaaagagc      4860
     tagaagataa attagaaaat ttacaagatc aagtaattga aaataaagat tttaatgaaa      4920
     tagttacagt aataaataaa caatccgaag acataaaaag acttgtgaaa gatgaagaag      4980
     aaatggatgc attacacatt tttagatatt cattaaacat tttccttgag tatattgaag      5040
     atttacaaat gggattacaa ttaacaagaa taggaatatt caatcctaaa atattgaaac      5100
     atgaagagtt ggatgatata gacgaagaaa aacttttagc aatcaaaact tcagcttgga      5160
     taagtagcca gactaaagac acttttattt tagttcatat accaacttca tttaaggaaa      5220
     cccaaaaata tagaattata aaatacccag ataatatagg ccgacaaatt gacataaatg      5280
     ataattttga atattttgta actgataaaa acattgtttt ttatttagaa aacacaccaa      5340
     gtttagacca aaaatttata atcactgatc aatgtatctc tcaaattctt actaatcaac      5400
     tagcgaattg tcaacacacg tttgtatcag aaaatgaatc tataaaatat attgaaccga      5460
     acatcattat aacttataat ttaagcaaaa cacaaattaa acaagattgt gaaatattca      5520
     acaaaacgat acagggaaac aacataatac aattaagtca atgcacttta gaaataagaa      5580
     acataaaatt tactacttca aagattataa acgaatataa aattatatta tctagcacca      5640
     atgtaacatt atatgaacca attccattgt taaaaattaa gaaatcaatt agctatcaag      5700
     aaaagcaaga aacagtttac aagtgtattg tattcacaat tttaataatt atagttttaa      5760
     ctatcactac ttacatcata tttacctaca ggcgcctagc caacaaaaaa gaaatttttg      5820
     ttagattcaa caaggatgtt gaatgttcta aaggaggggc g                          5861
//
ID   Gypsy-15_DEl-LTR repbase;    DNA;    INV; 617 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DEl_;
KW   Gypsy-15_DEl-LTR; Gypsy-15_DEl-I.
XX
NM   Gypsy-15_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-617
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 539-539 (2012).
XX
RN   [2]
RP   1-617
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 617 BP; 227 A; 150 C; 75 G; 165 T; 0 other;
     agtgacgtat taccaaatac tccagacatc aagcctaaca cccaacctgt atatcccgag        60
     atacccatta cttcatttgt caaacataac acccagcctg tatatcccga gatacccatt       120
     aattcatttg tcaaacataa catttcagag cctactatag gagttattca aattaatcag       180
     acataaacat ttcccgttag acataaacat ttcccacgcc tgttatcaac agtcccctta       240
     ttataaacat ttcacacgcc tttaccgacg acagcagaca taaacaagag gtaaactttt       300
     aaacaaaggg tccagcatga gaacccattc atcagcataa aagctttgac caatccaaat       360
     ttaataaaca aaagatgcag cctgacaacc cacccatcag gccactaatt cgaccaatcc       420
     aaatcttctg atcgaagtcc actttcgctg ctagcgtcgc tgtcaccgat aaaagccata       480
     gttataagaa taatgcaatt gtaaagacag ttcaattttg ggaatctaac tattaagaca       540
     ttaccaataa aactccactg tatattaaaa taaaaatcgc ttttttttta atatatcgca       600
     aagtgaaaaa tctaatt                                                      617
//
ID   Gypsy-15_DFi-LTR repbase;    DNA;    INV; 1270 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1270
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 917-917 (2012).
XX
DR   [1] (Consensus)
XX
CC   4-bp TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1270 BP; 345 A; 308 C; 384 G; 233 T; 0 other;
     tgtaagggtt tgtaaaacgc cttacaagtt tgagtgcagg agagccgcat agcaacagcg        60
     ggatgcgcgg cgtgcagaag aaaagggaaa taacggtgca aaggactttg gactcaatgc       120
     tgcggtgagt ctgcagactt tggacccaat aacggtgagt ctgcggactt cggacccgcg       180
     caaagaggag agaccgtgaa ctaacggtac cgttctggac tttgtacccg ttataacggt       240
     gaagttctgg actttgtacc cgttataacg gtgaagttgg cggactttgg accagcacaa       300
     agaggagaga ccgtgaacta acgggacttg tgctgccctt tggacccgat cacgccactt       360
     gtcctgcact ttggacccag tcacgccacc gaaggaggga aatagcggga ccagggtggc       420
     atataaaagg aggacgcgtg caggaagccg gacagtcaag tgaagtcgtg caacgagatc       480
     gtaccaacgc gagtgaaacc ccaaggagaa taccaagtgc caattaatcc ggaatcaaga       540
     tcgccgagtc aagaagccca acgacggtca cgtctacata agctgagact gccaagctga       600
     gatcccgagg gtacaaggta agttgtaggg tgcgtctacg agtctcgaaa tcgacgaagt       660
     tggtggagtc ttggcagtgg atgttgtgcg aaaggtaccc ggcgtcggtt tcccatgaaa       720
     gattgagaac ctgctgaggg ccaggccgac gaagatccag tggagttgtg cgaaaggtac       780
     ccggcgtcgg tcgcacacga gagattgagg acctgctgag ggccaggccg acgaagtccc       840
     gaccgaactc cggggtggag cgaagagtgg tgactgcagg catcactgct tagccccgct       900
     agggaggttc tgcctaacat cctccaaggt tgtgagaggc tcgtagcgtg cctagtacgc       960
     gaccggtgcc caaaagactc ggcaaggcag aggacgcgcg acaggcgtgc cgccgtagag      1020
     tcgacgcggg agccattacc ggcgtcaacg agggagagcg agtcgtcagg cagcagatcc      1080
     acgaatcaat accgagctgt aaatccacaa gcaataaacc caacacatat tctaaatcta      1140
     acctaactct gtgttcttct ttggtctcgg ggtcacgcaa caataaattt ggtgggacga      1200
     acacacaaac tcaactgagc tagccgcacg ttcacgtagc gagcggagac ataaaaagca      1260
     gttcgttaca                                                             1270
//
ID   Gypsy-15_DMel-I repbase;    DNA;    INV; 6502 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6502
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1037-1037 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..1807
FT                 /product="Gypsy-15_DMel-I_1p"
FT                 /translation="MSWACTYRDIKVEYESEDSWEEEXASPIXDQPLASPP
FT                 INSIMDPVQIQALVENAVRQALAQQQSQFQTQINSLAARVQSLQVEAPQII
FT                 TYEKVTVNPEVRCDLPLDIIKSVPEFSGTQDEYGAWRQAATYAYDLFKPYN
FT                 GSSAHYQPVAILRNKIRGAAGALLVSHNTVLNFDAILARLDCTYSDKTSLR
FT                 LLRQGLEMVRQGDMPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEVR
FT                 ADALHAFTSGLKKSLRAVVFPAQPKDLPSALALAREAEASIERSMFASSYA
FT                 KAIEERAQTSGNGKSRFQGRQGKDNREEQRQDRNPHFVRRPKGNTIPQNNN
FT                 DNQAQAPQPMEVDASSRFRQRTEYIGITLTGPILIKGEIPRTVRQVQDASA
FT                 SIMLCKKTPSLKTLAQKTPSRNMRMQQRLQSRISTVTMSTPQATTH"
FT   CDS           1785..4982
FT                 /product="Gypsy-15_DMel-I_2p"
FT                 /translation="VRPKRRLTEFFRERSRLPFIERRLAGRTLKMLIDTGA
FT                 AKNYIKPVKELKNVMPVASPFSVSSIHGSTEIKQKCFMKVFKHTSPFFLLN
FT                 SLNSFDAIIGLDLLTQAGVKLNLAEDSLEYQGVCEKLHYFSCPSVNFTDVN
FT                 DIVVPASVKKEFKDTILRRKKAFSTSQEALPFNTAVTATIRTVDNEPVYSR
FT                 AYPNPMGVSDFVNNEIKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPK
FT                 KRLVIDFRKLNERTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYL
FT                 AEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYV
FT                 YVDDVIIFSENEFDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFI
FT                 VSKDGTKSDPEKVKAIQEYPEPDSVYKVRSFLGLASYYRVFIKDFAAIARP
FT                 ITDILKGENGSVSRHMSKKIRVEFNETQRNAFQRLRNILASEDVILKYPDF
FT                 KKPFDLTTDASASGIGAVLSQEGRPITMISRTLKPPEQNYATNERELLAIV
FT                 WALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAK
FT                 VFYKPGKENFVADALSRQNLNALQNETRSDAATIHSELSLTYTVETTDKPL
FT                 NCFRNQIILEAARLSLKRNLVLFRSKTRHLISFTDKSHLLQALKEVVNPDV
FT                 VNAIHCDLPTLASFQHDLITHFPSTQFRHCKNVVSDISDRNEQLEIITAEH
FT                 NRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQEL
FT                 GETPIPSYTGEMVHIDIFSTDRKLFLTCVDKFSKFAIVQPVVSRTIVDITA
FT                 PLLQIVNLFPNIKTVYCDNEPAFNSETITSMLKNSFDIDIVNAPPLHSSSN
FT                 GQVERFHSTLAEIARCLKLDKKTNDTVELILRATVEYNKTVHSVTRERPIE
FT                 VIHSGTHERCLNIKARLVKAQQDNIERSNPTRQNRIFEIKARLVKAQQDNI
FT                 ERCNPTRQNRIFEVGEQVFVKNNKRLGNKLTPLCTEQKVQADLGTSVLIKG
FT                 RVVHKDNLK"
FT   CDS           5076..6500
FT                 /product="Gypsy-15_DMel-I_3p"
FT                 /translation="MMLMPLVVANARITDFSXAKYIPVLDGDVLVFEQRDL
FT                 LKHSSNLSEYAIMIDETQKLSESFPQSHMRKLLEVDTDHLRTLLSVLNVHH
FT                 RIARSLDFLGTALKVVAGTPDASDFLKIKITEAQLVESNSRQIIINSETQK
FT                 QINRLTDTINKIINARKNDLVDTPHLFEALLARNRMLFTEIQNLILTITLA
FT                 KSNIVSPTILDHADLKSLVEQDTPIVSLIEASKIRVLQSANIIHILIAYPR
FT                 VKFRCKKVAVYPVSHQHILLRLDDDTLAECKDDTFAVTGCIETTHHTFCER
FT                 TRRESCARSLHAGNSAQCHTQPSHLQAITPVDDGVVIINEATAHVSTDGGP
FT                 EILIEGTYLVTFEQTATINGTEFVNIRKALSKQPGIVRSPLVNIIGHDPVL
FT                 SIPLLHRMNSENLRSIQSFKEEVESAGSPRVWFAAGVILNVGLMGSFLLYL
FT                 ALRRRRASEEMQRTIDKYSLTEDGQKPEGG"
XX
SQ   Sequence 6502 BP; 2024 A; 1600 C; 1420 G; 1453 T; 5 other;
     taattccgga cacaggagag aaatacataa atggggccca acttcatcaa ggaccactaa        60
     tagtcgacag ggtagttaag ctacagaaca tgtaagtttg acaagctatt cactctatcc       120
     agtgtctcta aaaaacaagt aaaagaaaaa acagaattca ttgctggcca cgtaaaggtt       180
     gtgaatttcg gtttgaccaa ttttcattgc ctactttcgc acaaactcaa tttttattgc       240
     ataccctttt aataaaattt ttttttttaa tttatttatt aaggcataaa tttaattata       300
     aaagaaaaat attatagtgc atagccttta ttgcctaact cataaaaaat actgcatacc       360
     ttgacgaaat aaattttcgt tgcataccca acaaacttat tatattgcat accgtttctt       420
     gccatattta ataagccgat cgcttgtgct cgkcgaaagc ttacatttgt gttgtgtcaa       480
     ccaaccaatg agttgggcgt gtacttacag agacataaaa gttgaatacg agagtgagga       540
     cagttgggag gaggaackag caagtccgat agwagatcag ccgttagcta gtccccccat       600
     aaacagcatc atggaccccg ttcagatcca agcacttgtc gagaatgccg tcagacaggc       660
     attagcacaa caacagtccc agtttcaaac gcagataaac tccctagctg ctcgagtgca       720
     aagtttgcag gtggaagcac cgcaaatcat cacgtacgaa aaggttactg taaatcctga       780
     ggttaggtgt gacttaccat tagacatcat caagtcggtg ccagaattta gtggcaccca       840
     agatgaatat ggggcctgga ggcaagcggc cacatacgct tacgacctat tcaagcccta       900
     taacggtagc agtgctcatt accaacccgt agccatccta cgaaacaaaa ttcgaggcgc       960
     agctggagcc ctactcgtat ctcacaatac tgtgttgaat ttcgatgcca ttttggctag      1020
     gttagactgc acgtactcag acaagacatc cctacgccta ctgaggcagg gattagagat      1080
     ggtcaggcaa ggggacatgc cattgatgca gtactacgac gaagtcgaaa aaaaactgac      1140
     gctcgtcacc aacaaaattg tgatgacaca cgagcaagag ggcgctgact tactcaacgc      1200
     tgaagtaaga gccgatgccc tgcatgcctt cacttcgggc ctcaaaaagt cccttagagc      1260
     tgtggtcttc ccggctcaac ccaaggactt gccatctgcc ctggctctgg ccagagaagc      1320
     ggaagcaagc attgaaagga gcatgttcgc gagttcctac gccaaggcta tagaggaacg      1380
     agcgcaaacg tctggaaacg gcaagagccg cttccagggt agacaaggga aagacaaccg      1440
     agaagaacaa cgccaggaca gaaacccaca ctttgtcagg cgaccaaaag gtaataccat      1500
     tccgcagaat aataatgaca accaggcgca agcacctcag cccatggagg tcgacgcgtc      1560
     ttccaggttc aggcagcgaa ccgaatacat aggaataacc ctaacgggcc caatacttat      1620
     aaaaggagaa attcctcgga ccgttcgaca ggtccaagac gccagcgcat caataatgtt      1680
     gtgcaagaaa accccaagcc taaagaccct agcgcaaaag accccaagca ggaatatgag      1740
     aatgcagcaa aggctgcagt cgaggatatc gacagtgaca atgagtacgc cccaagcgac      1800
     gactcactga attttttagg gaacgctccc ggttgccgtt cattgaacga cggttggctg      1860
     ggagaacttt aaagatgtta attgacaccg gcgcggcaaa gaattacatt aagcccgtaa      1920
     aagagctaaa aaatgtaatg ccggtcgcca gtccgttctc ggtgagctca atacatggct      1980
     ccaccgaaat caagcaaaag tgctttatga aggtattcaa gcacacctcc ccattcttcc      2040
     tattgaattc gctcaactcg ttcgacgcta ttataggcct agacctgtta acacaggctg      2100
     gagtcaagtt gaacctagct gaggactctc tggagtatca gggcgtttgt gaaaagcttc      2160
     actatttcag ctgccctagt gtaaacttca cagacgtgaa tgacattgtg gtgcctgcct      2220
     ccgttaaaaa ggagttcaag gacacaatct tgagaaggaa aaaggccttc tctacctcac      2280
     aagaagctct ccccttcaac actgcggtca ccgccacaat tcgtacggta gacaacgaac      2340
     cggtgtactc gagagcttac ccaaacccca tgggtgtttc tgacttcgtg aacaacgaaa      2400
     tcaaacaact gctaaaggat ggcattatca ggccatcacg gtcaccctac aacagcccga      2460
     cgtgggttgt tgacaaaaag ggcaccgacg ccttcggtaa cccgaaaaag aggttggtca      2520
     tagatttcag gaagctcaat gagcgaacca tcccggaccg ttaccccatg cctagcattc      2580
     ccatgattct agcgaatctg ggcaaggcaa aattctttac tacccttgat cttaagtcag      2640
     ggtatcacca aatatacctt gcggagcatg accgtgaaaa gacgtcgttc tcggtaaatg      2700
     ggggcaaata cgaattttgc cgtttgccgt tcggcttaag aaatgcaagc agcatttttc      2760
     aaagagcctt agacgacgta ttaagagaac agattgggaa gatatgttac gtctatgtag      2820
     atgatgtaat aatcttctca gaaaacgaat tcgaccacgt ccgccacatc gatactgtgc      2880
     taaaatgcct aatcgatgcc aatatgagag taagccagga aaagactagg ttctttaagg      2940
     aaagtgtaga atacctcggc tttatagtaa gcaaggacgg aacaaaatcc gatccggaaa      3000
     aggtgaaggc cattcaggaa taccctgaac cagacagcgt ctataaagtt agatctttcc      3060
     ttggcttagc cagctactac agagtcttca tcaaagactt tgccgccata gcccggccaa      3120
     ttacagatat cctgaaagga gaaaatggtt cggtgagtag acacatgtcc aaaaagattc      3180
     gtgttgagtt taacgagact cagcggaacg catttcaaag gctgcgtaat attctagcat      3240
     ccgaggatgt tatactcaaa taccccgatt tcaagaagcc ctttgacctc accacagatg      3300
     cgtccgcaag tggcatcggt gcagtcctgt ctcaagaggg caggccaatc accatgattt      3360
     ctcgtaccct taaaccgccc gagcaaaact atgcaacaaa cgaaagggaa ttgctggcga      3420
     ttgtatgggc cttaggtaag ctgcagaact tcctgtatgg ctcgagggaa atcaatattt      3480
     ttaccgacca ccaacccctc acattcgctg ttgccgatag aaacacgaat gccaaaatta      3540
     aaaggtggaa atcttatata gaccagcata atgccaaggt tttttacaaa cctggcaaag      3600
     aaaatttcgt ggcagatgcc ctatccaggc agaatctgaa tgccttacaa aacgaaaccc      3660
     gatcagacgc cgcgaccatc cacagcgagc tgtccctgac ctacacggtc gaaaccactg      3720
     acaaaccctt gaattgcttc aggaaccaga tcattctgga agcagcacgg ctttcgctca      3780
     agcgaaactt agtcctgttc cgaagcaaaa ctcgccactt gatcagcttc actgacaaga      3840
     gtcatttatt gcaagcccta aaagaagtcg ttaaccctga cgtcgtaaac gcgattcatt      3900
     gcgatttgcc taccctagca agttttcaac acgacctcat tacgcatttc ccatctaccc      3960
     aattccgtca ctgcaaaaat gtcgtgtcgg atatatcgga taggaacgag cagttagaaa      4020
     tcatcactgc agaacacaac cgtgcgcacc gagctgcgca ggaaaatatt aaacaagttc      4080
     ttcgtgacta ttattttcct aaaatgggca gtttagcaaa ggaagtggta gctaattgca      4140
     gggtctgcac ccaagcaaag tatgacaggc acccgaagaa gcaagagctc ggggaaacac      4200
     ctatccccag ttatactggt gaaatggtgc atattgacat tttctcaacc gacaggaagc      4260
     tattcctgac ttgcgttgac aaattttcaa aatttgcaat agtgcaacca gtggtgtcca      4320
     gaacaatagt ggacatcaca gcacccctgc tgcagattgt caacctcttt cccaatatca      4380
     aaacggtata ttgcgacaac gaacccgcat tcaactcaga aactatcacc tcaatgctca      4440
     agaacagctt cgacattgac atagtgaatg cgcccccact ccacagctcg tccaatggac      4500
     aagttgaacg gttccacagc acactggcag aaattgccag atgtctgaag ttggacaaaa      4560
     agacaaatga cacagtagaa ctaatcctga gggcaacggt agaatataac aaaaccgtgc      4620
     actcagtaac tcgtgagagg ccaattgagg ttatacactc agggacccac gagcgctgcc      4680
     taaacatcaa ggccagattg gtcaaagccc agcaggacaa catcgaaaga agcaacccga      4740
     ccagacaaaa ccgcatattt gagatcaagg ctagattggt taaagcccaa caggacaaca      4800
     tcgaaagatg caacccgacc agacaaaacc gcatatttga ggtaggcgaa caggtctttg      4860
     taaaaaacaa caagaggtta ggaaacaagc tgaccccatt atgcacggaa caaaaggtgc      4920
     aagcagacct aggaacgtct gttctcatta aggggagggt ggtccataag gacaacctca      4980
     agtaagcgct ccctttacag ttaattaata agttacgtta aggaaaaccc gagcaccgga      5040
     gtctcacctt atctttaatt tccaggttca ccctcatgat gttaatgccc ctggtagtag      5100
     cgaatgctcg gatcaccgac ttttcgsatg ccaaatacat tcccgtgtta gatggggatg      5160
     tgctggtgtt tgaacagcgt gaccttttga aacattcaag taacctttcc gagtacgcta      5220
     tcatgataga cgaaacacaa aaactgtccg agtcctttcc ccagtcccat atgcgtaaat      5280
     tgctagaggt tgatacagat cacctgagaa cgttgttgtc cgtccttaat gttcaccaca      5340
     ggattgccag gagcttagac ttcttaggta cagccttgaa ggtagtggcg ggtactcctg      5400
     atgcctccga tttcctaaag atcaagataa cggaggctca gctagtggaa tctaactcta      5460
     ggcagataat catcaactca gagacccaga aacaaatcaa tagactaacc gacacaatca      5520
     ataagataat taatgcccga aaaaacgact tggttgacac cccacatcta ttcgaagcac      5580
     tattggcaag aaataggatg cttttcacag aaatccaaaa tttgattctt accattacgc      5640
     tggccaagtc aaatatagta agccccacaa tccttgatca cgccgatctg aaatcgcttg      5700
     tcgaacaaga cactcctata gtaagcttaa tagaagcatc taaaattaga gtcctccagt      5760
     ccgcaaacat catccatata ctaatagcct acccaagggt taagttcagg tgcaagaagg      5820
     tcgctgtcta cccagtctcc catcaacaca ttctcctacg cctcgacgac gacacactgg      5880
     cggaatgtaa agatgacacc ttcgcggtca caggatgcat tgagaccaca caccacacgt      5940
     tctgcgaacg gacccggcgc gaatcatgcg cgcgttcact ccatgcggga aactctgcac      6000
     aatgccacac acaacccagc cacttgcaag caataacgcc ggtwgacgac ggtgttgtga      6060
     taatcaacga agcaacagcc cacgttagca cagatggtgg gccagagatt ctgatcgagg      6120
     gaacgtacct ggtgaccttc gagcaaacgg caaccatcaa tggtaccgaa tttgtaaaca      6180
     tccgaaaggc actaagcaag caaccaggaa tcgtcagatc tccactagtt aatatcatcg      6240
     gccacgaccc ggtgctcagt atccctctgt tgcacagaat gaacagtgaa aacttgcgct      6300
     ccatccaaag ttttaaggaa gaagttgaat ctgcaggctc gcctagggtc tggttcgcag      6360
     ctggtgtcat cctgaacgtt ggcctgatgg gctccttctt actttacctg gcgttaagga      6420
     gaagacgagc ctccgaggag atgcagcgga ccatcgacaa gtacagcttg accgaggacg      6480
     gtcaaaaacc tgaggggggg at                                               6502
//
ID   Gypsy-15_DMel-LTR repbase;    DNA;    INV; 489 BP.
XX
AC   .
XX
DT   13-AUG-2018 (Rel. 24.06, Created)
DT   13-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-489
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1026-1026 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 489 BP; 143 A; 120 C; 114 G; 111 T; 1 other;
     agttaacaaa ccatcaagtt cacattccct tagcaactaa gtagcctcgc aaagtaatgc        60
     tgacgcgcca taatggagtt cagcgctcta tgctgagacc gttcggcggt agaagtccga       120
     cgcttcccat ttggagtgtc gcgctgcgcc gcaaggaatg ctgagtcggc ttgccgctca       180
     tgtcttggtg gcgcgatgca ttgtcgcgta gggtagacta agcaagaata ttgtctgtac       240
     ttcagttcta gaaaggctgc tcaataaamc acagcacgac tccggcgcat agccgtaaaa       300
     tcactttgta cttatttaca ttggattgct aagccacaag gctagcaaga taactaaggg       360
     ggcgaagtca agccctccaa cgtaatcttc ctaactccag caatcatacc taatcttgag       420
     aaggaagacc cctggacaca ggagagaaat acataactct ggacacagga gagaaataca       480
     taacttgca                                                               489
//
ID   Gypsy-15_DMo-I repbase;    DNA;    INV; 4339 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4339
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4339 BP; 1420 A; 708 C; 996 G; 1215 T; 0 other;
     cagaagtggg atcaaacttt cgaccaacag tggctgaaga tcaatttcgt gttttgttag        60
     agcaacaaaa tcagaatttt ctggaacttg caaaaagttt gcaagcgtcg tctaaacaac       120
     cgttacaaaa tggcggcatt gtcttgccga aattcaattc tgatgttgct ggcgccgatg       180
     caagacagtg gtgtgctact gtagacatct tattcagcga aaaacctttg tctgggagtg       240
     aattaatttt ggcgctaaca aaatgcttgg atggaagcgc gtctcagtgg ctatcgcaga       300
     tttgttatgc aggcattact tggcctcagt tcagacaact gtttgagcaa acgtatcaaa       360
     gtgtggagac gccagcggca tctattctaa atctactgaa tagtcgtcca aatgccggcg       420
     agtgtcttgc tgtgtatgcc agtcgacaaa ttacttctct attgactata tggcgagaca       480
     tggatactga gggtatagct acgtctgttg tgcttggtca tttggcaaat cacgaccaca       540
     ggttgcgacg cattgcctac actggaaaca ttagtaacag aagggatttg cagtcggagt       600
     tacaggtgtt ttcgttcgaa agaaagcgat ttaacttcac ggaggaggaa tcttcgaaca       660
     aacgccccaa gatgtttcaa gttaaatgtc actcatgcgg gaaacttgga cataagaagg       720
     cagagtgcag agtgaagaaa caatcgccat ctagagaaga ccttcgagct gagcgagcgt       780
     cgttgtgtgt gtcgtcgacg agccaaaaac aatgatgcaa catcgaggtg agaagtatca       840
     gactattttt gattcgggct ccgagtgctc tttagttaaa ttgtgtctat cacacaagtt       900
     gaccggtaaa agaacaaaca atgttgtgtc actaagcggt attggtacca ctactattat       960
     ttgtacgatt cagataacaa gtaacgtaat gattaatgga aattgtattg aaatagtgtt      1020
     ccatgtaatt gaggatgcat gtatgaaaaa tagtattgta ttaggtcgcg agatattagc      1080
     tcaagggtat atcgctatag tatcatgtgc aggtttcgaa tttgtaaaag acaaaacagt      1140
     taatatttgt tctgtaaaag cctatgaata tgattttgaa aacgtatgca cagatttaat      1200
     tggagaagag aaaaaccaat tgcttaagtt attggaaaag tatagaaaac agtttattca      1260
     gggaacgcct tgtcctcgtg taaatacagg agagatgact attcgcttaa ttgaaccaac      1320
     taagacggta caaagacgac cttatcgatt tagtcctaac gaacgagaat tacttcgagc      1380
     taaagttcaa gagctgttag agtataatgt aatcagacct agcagttcgc cctttgctag      1440
     cccggcactt ttagtaaaaa agaagaatgg ttcagtcagg ctctgtgttg attatagaga      1500
     attgaatgaa aatacagtgg ctgataagtt tccacttcct ctaatatccg atcaaatagc      1560
     tagactgaga ggagccaagt atttcacttg cctagatatg gcctgtggat actaccaggt      1620
     gcagttgcat aaagattcca ttgaatacac agcatttgtc actcctgatg ggcagttcga      1680
     gtttacggcc atgccgtttg ggttaaagaa cgcaccatcg gtattccaga gagcggtaat      1740
     gaaagcgatc ggcgacctgg cctatactta tgtaattgtt tacatggacg atataatgat      1800
     cgttgcccca acgaagaaag atgcttttga gagattagaa acggttttga atgtactgtc      1860
     taatgctggc ttttcattta atggtgaaaa atgttcattt ttaaaagact cggttcagta      1920
     tcttggatat gaagtacgag aaggtgaaat tcgtcctaat ttacgtaaaa ttgaagcatt      1980
     gagtgaattg ccacctccca cgtcaatcac aagtttgaga caatttattg gcttagcttc      2040
     atactttcgg caattcgtgc caggtttctc tcaggtaatg aagccccttt atgcactgac      2100
     ttgtgataaa actagcttta gctggaaaaa ggagcatgaa tcaattcgca aacaaattgt      2160
     tacgattctt actaacaaac cagtgttaat gatatttgac ccaaaatacc cagtggaact      2220
     gcatactgat gcaagttcaa tcgggtatgg agcgatactc ttacatagaa tagaaaataa      2280
     accatatgtc atagagtatt ttagcaagac aactactaca tgtgaatcta aatattcgtc      2340
     ctgagttgga aactttagca gtagttaagg cagtaaagca ctttagatac tatttgattg      2400
     gaattaaatt tgtcctattt acggattgtc tagaacgaaa attgaattaa caccaagggt      2460
     atatcgttgg tgggcatttt tacaatcttt caacttcgat atacagtatc gggaagggaa      2520
     gcgtatggcc cacgtagact tcctctctag gaatcccttg accaataaga aagaagtgtc      2580
     acagaataaa ttcctagaaa agcgtgtaga aattatgaca gtgtcggaaa gtcggataca      2640
     agccgaacag caacgcgact ctgatatttc aggtataatt cgcaaattaa ttgatggaga      2700
     gctttcgaat gatttatcat tcacgtgtga aattagggct aaagttttgt ataagaagat      2760
     tcaacgcaat ggtaggactc gtagtttacc agtgatcccg cgatcgtttc ggtggtcgat      2820
     aataaatcaa gttcatgaat caatattcca tctcgggtgg gaaaagacct tggataaggt      2880
     atacgagcac tattggttta aggggatgac aaagtatgtc cgaaaattcg tagcgaactg      2940
     tatcacttgt agagtgacaa aatcaacttc agggaaggtt caagcggaac tacacccaat      3000
     acctaaagtg agtataccct ggcatacttt gcatgtagac attactggga ggttaagtgg      3060
     caagaatgat cgcaaagagt atataatagt acaagttgat ggttttacga aatatgtgta      3120
     tctgtatcac acatttaagc tggacgctaa tagctgtatc aacgcattaa aatcttcaat      3180
     tgctatattc ggagtaccca atcgaataat agctgatcaa ggtagatgtt ttacattcat      3240
     ctgcatttga tagccacggg aaccagtagg gccaacgggc aggtcgaaag agtgatgagt      3300
     actttgaaaa atttgctaac tgtcgctgag gctagtgatc gaatatggca agatgttctg      3360
     ggagaagtgc aattgtcact aaatagtaca attaacagaa taaccaagtc aagtccatta      3420
     gaactcttag ttgggaagag tgccagaccc ttgggactag ttcctattga tgatatggag      3480
     cctcaagtta atgtggcaga gatacgaaag caagcgataa agaatataga gaaagcagtc      3540
     cagtatgaca aagttaaatt tgataagggt aaagctaaag ttgtgaagtt tggtatagga      3600
     gattacgttt taattaaaaa caacgaacgt atacaaacaa agttagatcc aaagtttcgt      3660
     ggaccttttg taatcataga agttttagag ggtgacagat ataaactgag atctttaaca      3720
     gataaacgac tgtacaaata ctctcatgac agcttacgaa gaatgcctga ggggcaagta      3780
     ccaagtgagc tggatatcga cggagatgaa atgagttcat ctgaagaaac gggtgaaaca      3840
     gaccgtatgg aaacgggtga aacagaccgt atggaaacgg gtgaaacaga ccgtatggaa      3900
     acagtggcaa cagactgtaa agacggagga tagatgccgt cagatgtcgt ggagtattgt      3960
     cgatggctac gtggaggtac tttgcctagg attcttgaga cgtaaaagtg acatgaaagg      4020
     actgaataac aagaattgaa atgtaaaaga tatttactga agaggcattg ttaatgaaat      4080
     tgaaatgtaa aagatattta ctgaagaggc attgttaatg aaattggaat gtaaaagaaa      4140
     tttactgaaa tgacaatgtt aatgaattga gaatgttgtg ttaagaaacg gttatgtgaa      4200
     ttgaaagctt gcattgagac aaaatacttt tgaagatttt taatgaatat taattgcttt      4260
     aataaagttt ggaactatta aaatgagttt ttagagaact gtttcctaca cgtgggcgtg      4320
     tagattgtca ggttggccg                                                   4339
//
ID   Gypsy-15_DMo-LTR repbase;    DNA;    INV; 339 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-339
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 339 BP; 106 A; 51 C; 91 G; 91 T; 0 other;
     tgcggagata aatggataga gtacagtatt ttgaaattac gcgccaatag tcataaggtt        60
     gagtaaatgc aacactaaaa tggtgtgacg tcagtaaata ctgatatcga gtgtggctca       120
     gggttgtgtt gggtaagtgt gacgacgatt gttatcgata ctgagtatgg gaagaatatg       180
     atctctagta gacatgaatg tgctagagcg cgtcactttt gatttgagta gagagcccga       240
     cagcacgctg agactcgctg cacaatttta gtggcgtaat gaaggacaaa atacaagacg       300
     aatcgactgt aactgaggat tttaatgact cgccgatat                              339
//
ID   Gypsy-15_DRh-I repbase;    DNA;    INV; 6048 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DRh_;
KW   Gypsy-15_DRh-LTR; Gypsy-15_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6048
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1579-1579 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1888-2394] - Reverse transcriptase
CC   Positions [3481-3957] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1102..4437
FT                 /product="Gypsy-15_DRh-I_1p"
FT                 /translation="MRGSRPLGEGMPKPTAYVLLAMRKNRSSDGSVLFRVG
FT                 KRPATPASEGRPGIARCCLSKLMGDLQAEEMQLSATVLIGESKIKATVDTG
FT                 ATASFISEELADRLQAAGRVGPTRRQVRMADGRCGEIRSQLETKIGLGTKT
FT                 ISMELLILPGLIDALVLGWNFLTRIGAEVECAGHSASIPAKDRRGGWLEEK
FT                 LSVAIVETPKRFAEKDVEGFLKAELDELEGIKGTSNVAVHRITMKDDQPVK
FT                 QRYYPKNPKMQGEINAKVDELLEKGCIEPSRSPYSSPIVMVRKKTGKWRLC
FT                 VDFRQINARSVKDAYPMPMINYILDQLREAKYISSLDLKDGYWQIPLEADS
FT                 RQYTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMMPHAFAYQD
FT                 DIIVIGRTLEEHMENLKEVFRRLRAANLKVNAEKCKFFRKELQYLGHRITD
FT                 QGIGTDPEKVSAIALIKPPANVKELRQYLGVASWYRRFVPDFATLVHPLNS
FT                 LLRKSTKWEWTEDHQQAFEAVKARLIADPILACPDFTKTFVLQTDASDYGL
FT                 GAILTQNSDQGERVISYSSRSLNGSERNFSATEKECLAIVWAIRKLRPYLE
FT                 GYHFKVITDHMALKWLNSIESPTGRIARWALELQQYDFEIAYRKGQLNIVA
FT                 DALSRQPLPETCRRVKTQEQHKETGECNWIRDMRSKISQNPQKYPDYMTEA
FT                 DQLYRHIPHRAGNEDVTSWKLCVPTGSRRRVMSENHNSPTAGHMGSRKTIA
FT                 RVAARYHWPGMHRDIRKYVQNCESCLRYKPSQLQAAGKMLTQVPEEPWATV
FT                 CADFVGPLPRSKHGNSMLLVLVDRFSKWTEMVPMRRATTETLEKAIRERIL
FT                 ARYGVPKVLITDNGVQFTSRAFKKFLGELGVRHQFTAPYTPQENPTERANR
FT                 TVKTMIAQFTGADQRTWDEKWPELQLAVNTSVAESTGYSPAFITQGREPRL
FT                 PSALYDEGTIGTGRQTQTPAENAQKLKEIFELVRRNMEKAAQDQARHYNLR
FT                 RRPWKPNIGDTVWAKEHHLSKAAEGFAAKLAPKYDGPFKIMNFNSPVICNL
FT                 RHENTGKEKTAHISQLKQQCIGGQNRGSKSDLAGAHCKSKERERTIHSIER
FT                 TQMR"
XX
SQ   Sequence 6048 BP; 1699 A; 1501 C; 1875 G; 973 T; 0 other;
     gaaaataaag aaacaggtcg ttacatctgg cgcccaagag tgattgtcct gaccaaggaa        60
     acaaaagttc cgagatgggg aagtcctgga tttataatct caggaaggag gacttcgacg       120
     aggtgagcca agttctggga atagaactgg agggctcagt cgagtcgatg aggaagactc       180
     tgggagactt cgtcgaccag acggcagagg agccggacat cgccgatttg gtaacgggcc       240
     tggagaagaa attccggaaa atgcccacgc caaaattcaa gctcacaacc gcaagtgccg       300
     agggcctgat agcgagcttg gatgtgtcga gcatcgcaag ccacgcagcc ggcagcggga       360
     gagtagccgg gaaagaaagg agagttccag gacgcacacg caggactacg cgaaggtggc       420
     caagcaggtc cgggagtgga atttccgcta cgacggaaac gacaagccgc tggaattttt       480
     ggagcaagta gagtggtcag tcgtgactta cggtctcgac ataaaccaga tcccacgagc       540
     aatgccggag ctgctacaag gcagagcctt gaagtggttc atcgccaaca atcggcactg       600
     ggagacctgg ggagacttca tatacagctt ccaaaattac tttcttcccc gaggatacat       660
     ggcgaagctg gcggaccagg tcagacagag gaagcaagcc tacggggaaa gcttcaaaga       720
     tttcatggtg gacatgcaga ccctgatgcg gccactgaat atgtcgacca aagaaacgct       780
     ggagaggata aaagagaaca gcacgccggc actccgaatg ttcgttcgcc catacgaatg       840
     tcgaaatttg gataccttga tggcgctggc agacgagttt gaggagctcg accagcagcg       900
     ggagaaattc gagctggaaa acaatccccg caagcagcaa gggcagagcc acccagtacc       960
     aaggccaaga tcagaccagg gtgcggtgtg caggcggtgc caggaggacc cggacgcaca      1020
     accacgaagt acgccgcgcg gccacgaacc agcaaacaat cgcggcggat acgtagcaaa      1080
     tcctacccag gcctgccgca gatgcggggg tccagaccac tgggcgaagg aatgccgaaa      1140
     ccaacggctt acgttctgct ggcgatgcgg aaaaatagga gttcggacgg ttcagtgctg      1200
     ttccgggtcg ggaaacgccc agcgacccca gcctccgagg ggcggccagg gatcgcaagg      1260
     tgctgcctct cgaaattaat gggcgacctg caggcggaag aaatgcaact gtccgccacg      1320
     gtgctcatag gtgaaagtaa aattaaggcc acggtggata ccggcgccac ggcgagcttc      1380
     atcagcgaag agctggcgga caggctgcag gcggcaggaa gggtcggacc cacgagaagg      1440
     caagtacgga tggcagacgg tcgctgcggg gaaataagat cacagctgga gaccaaaatt      1500
     ggactgggca cgaaaacaat ttcaatggag ctgctgattt taccaggact gatcgacgcc      1560
     ctggtgttgg gatggaattt cctcaccaga atcggggccg aagtcgagtg cgcaggacac      1620
     agcgcgtcga taccggcaaa ggatagacga ggaggatggc tggaggagaa actgtcagtg      1680
     gcaatagttg aaacacccaa aagatttgcg gaaaaggatg tggagggatt tctaaaagcc      1740
     gagttggacg aactggaagg aataaaggga acatccaacg tggccgtaca taggatcacc      1800
     atgaaggacg accaaccagt caaacagcgg tactacccta aaaatccaaa aatgcagggt      1860
     gagataaatg ccaaggtaga cgagctgctg gaaaaaggat gtatcgagcc gtccaggagt      1920
     ccctacagct caccaatagt catggtgagg aagaagactg gaaagtggag gctgtgtgtg      1980
     gatttccggc aaataaacgc gaggtccgta aaggacgcat acccaatgcc gatgataaat      2040
     tacatcctgg accagctgcg ggaggcgaag tacatcagca gtctcgactt aaaggacggt      2100
     tactggcaga tccccttgga ggcagacagc aggcagtaca cggcgtttac tgtaccaggg      2160
     aagggcctgt tccaatggaa ggtgatgcca tttggcctac actccgcgtc ggcaacattc      2220
     cagcgggcat tggatcaggt cattggacca gaaatgatgc cgcacgcttt cgcgtatcag      2280
     gacgacatta tcgtcatcgg acgaacgcta gaagagcata tggaaaacct gaaggaagtg      2340
     tttaggagac tacgggctgc caacctgaaa gtaaatgcgg aaaaatgcaa gttttttaga      2400
     aaggaactgc aatacttggg gcatcgcata acagaccaag gcatcggaac agacccagaa      2460
     aaagtgtcgg caattgcctt aataaaaccc ccggccaacg ttaaggagtt gcgacaatac      2520
     ttgggagtgg cgtcgtggta caggcgtttt gtgccagatt ttgcaacgtt ggtgcatccg      2580
     ttgaatagcc tgctccgaaa aagcacaaaa tgggagtgga cagaggacca tcaacaggcg      2640
     tttgaagctg tcaaggccag gctaatcgca gacccaatct tagcatgccc agatttcaca      2700
     aagacgtttg tgctgcagac cgacgccagc gattacgggc tcggtgctat tctcacacag      2760
     aattccgacc aaggcgagag ggtgatctcg tattccagca ggtccctgaa tggatcggaa      2820
     agaaatttct cagcgactga gaaggaatgc ctggcaattg tgtgggccat acgcaagtta      2880
     aggccatact tggagggcta ccacttcaaa gtgatcacgg atcacatggc actgaagtgg      2940
     ttgaatagca tcgagagccc aaccggaaga atcgcacgat gggcgctgga actgcagcaa      3000
     tatgactttg agatcgcgta cagaaagggc cagctgaata tagtagcaga cgcactatcg      3060
     cgacagccac tgccagaaac gtgtcgacgg gtaaaaacac aggaacagca caaggaaacc      3120
     ggcgagtgta actggataag ggatatgcgg agcaagatat cccaaaatcc ccaaaaatat      3180
     ccagactaca tgacggaagc cgaccagcta tatcgccaca taccgcacag agcgggcaac      3240
     gaggatgtca catcatggaa gctgtgcgtg ccaacggggt ccaggcggcg ggtaatgtcg      3300
     gagaaccaca actcaccgac agctggccac atgggcagtc ggaagacaat tgccagagtc      3360
     gcagcaagat accattggcc gggaatgcac cgcgacataa ggaaatatgt gcaaaactgc      3420
     gagagctgcc tacggtataa gccaagccaa ctacaggcgg ccgggaaaat gctgacccaa      3480
     gtaccggaag agccgtgggc cactgtatgc gcagatttcg tcggaccact gccccgctcc      3540
     aaacacggga attctatgct actagtgctg gtagataggt tctccaagtg gaccgaaatg      3600
     gtgccaatgc gcagggcaac gacggaaact ctggaaaagg cgatccgcga gcggatcctc      3660
     gcaagatacg gcgtacccaa ggtgctgatc acagacaatg gcgttcagtt caccagcagg      3720
     gcgtttaaaa aattcctggg tgaattaggc gtccgacacc agttcacggc cccatacacg      3780
     ccccaggaaa acccgacgga gagagccaac aggacggtga aaacgatgat cgcccagttc      3840
     accggggcag accagaggac ttgggacgaa aagtggccgg aattgcagtt ggccgtgaat      3900
     acgagcgtgg ctgaatccac gggatattcg cccgccttta ttacgcaagg aagagagccc      3960
     aggttaccca gcgcactgta cgacgaagga acaatcggca caggaaggca aactcaaact      4020
     ccggccgaga acgcacagaa gctgaaagaa atcttcgagc tggtgaggcg aaatatggaa      4080
     aaggcagcgc aggatcaggc acgccactac aatctccgta gacgcccatg gaaaccgaac      4140
     atcggtgaca cagtctgggc taaggaacac catctgtcca aggctgcaga aggattcgcc      4200
     gcaaaattgg caccaaagta cgacgggccg tttaagataa tgaattttaa ttcgccggtg      4260
     atatgcaatt tgcggcatga aaatactggc aaagaaaaaa ccgcccacat tagccaatta      4320
     aaacaacaat gcattggtgg ccagaaccga ggatcaaagt cggacttagc gggggcgcac      4380
     tgtaaatcca aagagaggga gaggacgata cacagtatcg aacgcacaca gatgcgttag      4440
     gagcgcgaga gcgggagagg gagggtctag gtgcggatac cgttaccggg tacgccaaag      4500
     agaggacccg tcggagcccc gtagcaaggg agagtccaaa ggccgccgcg gacaacggaa      4560
     ccaggaacat cggaaaccga ggtttcgtca gcgcgcgagc gccacaagac gggcctattt      4620
     aaatcaggtc gccaacatga agcaagcagc agcagcagca gtaagtccgt gaggggagag      4680
     gggcggggag gcagcactgg gcaacagcca gcggcgagat ggaggcggga ctcaggttcc      4740
     gcactccagc tgctggcgtc ccccctggtg tcgcggtccc cgtcgccgaa cccagagacg      4800
     gaggacgaag ggcggatccc gacgtggagc tggaggagga ggaggaggcc ggcgtccggc      4860
     cggcagggca ggaggccgag gtgccgacca tcgacctgtc ctcgtcgagg aggaggagga      4920
     ggacaccggg acggagacgg tgagtccgga ggtctcctcg gacgaggagg acgagccacg      4980
     tcgggcggcg aaggcccgga tggcattccg gaggatccgg agggccgcag ccggatcggg      5040
     cggatccgct tgggcgacgc agcgccatcg ggccgcccgg aggaggcgag gcggatattc      5100
     gcaaccgatt gggcacggcc gggccctccg gagcagccgc cgccgcaagc accgccaccg      5160
     ccgtcgccac cgccgtcgcc gcgcagccgc cgccaccgcc gtcgccgccg cgggcagcac      5220
     accgccacca ccgtcgccgc cgccaccgcc accgccgtca ccgccgccgg gagcaccacc      5280
     gccaccgccg ccgccaccgc aggcaccacg gccagcccag gcacccagca cggagcggag      5340
     gtgagggtcc tgagggccca ataaaaggcc tttgaaggtt ttaaacgcaa atggtttgtt      5400
     tatttacatt tgggagcaag gggttgccgg acataggcaa tagggacggg ggcgccgagt      5460
     caggcggtcg atcgatagtt gcgatcgatg ggtagcacaa ttggttattg ctatgttcaa      5520
     aaattcaaag gcaacttaag acaacgaaaa ggcaacgacg atggcaacac tggaacccac      5580
     aatcgataaa cgcgatcgtg gtgagattcc agggagttgc cggaccgagg gaaaacggaa      5640
     tggtgacttt tagtttgggg aaatgtctgg gcgggaaaat tcgaattcca cgcagggaac      5700
     tgtctgggga actgggaact gtctgggaac tgggaactgt ctggggaact gggaactgtc      5760
     tggggaacgg ggaactgtct ggggaacagg gaaacagtct ggggaaataa tctttcaagg      5820
     agctgcatgg aaaagtcttt tagggaaaca gtcgcgggaa agttcaagtc tttcaaggag      5880
     ctgtacgagt aaagtctttt aggaaaacag tctggggaaa ggttaagtct ttcggggaac      5940
     tgtctgggga acatctaaca cgcaattcag gcggggaatt cgagtagtct acacatcaag      6000
     ggcggggaaa gtcaccactt tcattacgtt tccgaaggaa gggggaaa                   6048
//
ID   Gypsy-15_DRh-LTR repbase;    DNA;    INV; 1123 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DRh_;
KW   Gypsy-15_DRh-I; Gypsy-15_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1123
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1580-1580 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1123 BP; 326 A; 287 C; 333 G; 177 T; 0 other;
     tgtgaggagt cttaaactcc ccacaaatcc cgatgcagga gatcggccta gcaacagcgg        60
     aggaggcgag aaagccggag aaatgaaggg catccaggtc aaacgggaaa tattcggacc       120
     ttggaccctc atatggcaag ggcaacgagg tcatacggtg aattggcgga cttcggaccc       180
     gcctaaagag gacacaccgt gaattaacgg tacctcgatg gaccttggac ccgcgcccgg       240
     caagggcaac gaggtcatac ggtaaattgg cggacttcgg acccggataa agaggacaca       300
     ccgagaatga acggtacttc agtggacctt ggacccgagc tcggcgaggg aaataacggc       360
     acctacagcg cctataaaag gacggcgcaa gcgcagctcg ggacagtacg agtgcgagaa       420
     tcagagcgag tgcgtgaacg cggaataagt acaaatcgaa accgaagtgc ccaaggatca       480
     agatcgcaaa gtcgagacgc cgaacgacga caagtctaca aggctgaggc tacaacgctg       540
     agatccaacg gtgctaggtc gtggtaaaat caaacttagg gagtccttgc gcggtgtcag       600
     gcgataaagg tggctaggcg ataagggaga actttgttct acctgctagg cgatacacct       660
     tgccgacaaa gtccaggctg aactccggaa gccaggcgat aaaggtggct aggcgataag       720
     gcgaaacttc gtttcacctg ctaggcgata caccttgccg gccccggtag ggaagctcgc       780
     ataacatcca gggtttttgg tggagccgtc ccgatctcag tcacccggag cagcaagccg       840
     aagcaacgca gtagcaggcc aggagcgacg cagcggtaag ccaggagcga cgcagcggca       900
     cgccaggagc agcgcagcag cgagccagga gcaacgcagc agaagacagc gacaacgggc       960
     agcagaacaa tagcaataag gctatatttt agagaatcaa taaaccagca ccaacctaat      1020
     cctttctggc gttatccttt ggtcacgggc ggtcactcaa tataaatttg gtggaacgaa      1080
     ctcacaacct ctctgagcta gccgcacgtt tacgtagcga gca                        1123
//
ID   Gypsy-15_DTa-I repbase;    DNA;    INV; 5571 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   10-AUG-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DTa_;
KW   Gypsy-15_DTa-LTR; Gypsy-15_DTa-I.
XX
NM   Gypsy-15_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5571
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1624-1624 (2012).
XX
RN   [2]
RP   1-5571
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           527..2080
FT                 /product="Gypsy-15_DTa-I_1p"
FT                 /translation="MSESERNRQTFNRKIRRSLEFFLNRGSEIMTPPATRS
FT                 QANQKVNRDIKDITPPQGFMMDGSAAFEISDQQDMTGAVGGVEAHISDGVP
FT                 RGDQHNLTSDEEGKSPVHLGKEIESAINLALLQAHETYRKAASIEVSAFQK
FT                 QMQQEMMNFMKEINQIVRPTGKAQADTQEPPPRPSMEAARPNPAQQRADGR
FT                 LWEEQQRVWAGWHQYSQPPPLFRPGVSAAGSLNGNPSGGHRDYKPEMSHPR
FT                 KWGISFDGGPRGMPIGEFIFRIEHLQMAYQVTWEEVLRSFHCLVDGQAKEW
FT                 FWMHVRTTGLRDWPNLKNALQQRFQTLRSNFERERELRERKQRPGESVDEY
FT                 LQAMLSLRSQLDINMSDHDLIRTIKVNIRDGISRIIYPMWLTNLEQLREEC
FT                 HEAERVLANRWSRTSGMQEHQRPPREKHQVHEAYISQEPDEDSEFVEAISR
FT                 GREGGAQSTLVCYNCSMPGHTYYTCDSEVLNKFCYRCGRQGVRFTRCPKCQ
FT                 AGNARWSLTQPEESRSHPKTTN"
FT   CDS           1969..5394
FT                 /product="Gypsy-15_DTa-I_2p"
FT                 /translation="MRATGSTIYSVSEMSGGKREMELDATGGVPLPSQDDK
FT                 LTASEDLKYMLKDKYKSVCKKILINKNKNKVNIGTKYVARPIEERERDYQQ
FT                 ARERIFGEPRGDSHSRKSARIIRARRRYQQRKQERREVCTAIISAATTENR
FT                 AFAEVLVANHPMQGLLDTGASKSILGDGCMDLVKRLELEVLKVRSTVQTAG
FT                 GATHRIAGRIEVDVCYKQETHRISLLLCPSLRQKLYLGIDFWRKFSLAPDV
FT                 VGVGELSSIENEFHVTSEPVEPHILSEEEKTQLELVQDKFLTYERHGMGLT
FT                 ELETHSIQLEAGTVPVKERFYPVSPKVQELLYAEVDEMLRLGVIETSESPW
FT                 NNRVTLVQKPGKNRLCLDARKLNKVTIKDAYPLQNIESILSRVDETIYISS
FT                 VDLKHAFWQIELDQKSREYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLMD
FT                 RVIPQKLRSNVFVYLDDLLIISKTFKDHMRILTEVAKSLQNANLTIGLHKS
FT                 KFCFRFLKYLGFVIGEGSLRTDPGKIQAIAKIPVPKNVRQLRSFLGTAGWY
FT                 RRFIRGFSDVSAPLTDCLKSKTKFKWTPAAEEGFNKLKTALTSAPVLIHPD
FT                 FQSRFFVQCDASHVGIGAVLFQKDVDGNERPIAFYSQKLRGAQLNYTVTEK
FT                 ECLAAVKAVNRFRPYIELLPFTVITDHSSLQWLMTLKDLNGRLARWSLALQ
FT                 AYDFQIEHRKGKDNVVADMLSRIPEVEAIEVFDFETIEFESPEYLERIQTV
FT                 KENXEQFPDLVVEDGLLLKRVXFVTGDTQEFPWKLWIPEALTNTLIQQAHD
FT                 SDTAMHGGIGRTLNRLRQFYYWPKMAIQVKNYVKDCNICKETKHTTQMTRP
FT                 KMGKQTITSRPMQQLYMDFLGKYPRSKRGNCYILVVLDHLTKFVWLKAMPK
FT                 ATADAVVRYLESEIWHEFGVPEVILTDNGVQFVASRFQSFLEKYQIRHKRT
FT                 GRYAPQSNASERVNQSVLAAIRIHVGEDHTRWDDKIVEIQGSLRSAVHNST
FT                 GVSPYFAMFGQHMFLSGQDYRIARKLDAVNDAQIQSLSRTDRLQLIREKVT
FT                 ERINETYERSAKQYNRRAKEIKYLPGQEIFKRNFILSDFKNNINAKFCRKY
FT                 SKCRIVRPVGNNLYELETLQGKRLGVFHAKDLKQ"
XX
SQ   Sequence 5571 BP; 1739 A; 1202 C; 1480 G; 1142 T; 8 other;
     gagtggcgcc caaagaaaac ataataaaaa gacagaaaaa aagaaaagaa agagaatctc        60
     cggctggtcc tcgacaactg gtggtggtcc tgcataattg ctaccaagag caaatcgtag       120
     aagtcccact aagaggcgag agacgcagcc acgtaggatg atcgctgaga tgcccacgac       180
     cgggaccccg acaggaggca gaaatatcct ggttcggcgc ggcccatcaa gggcgtcgga       240
     agaagaagtc tatgaacacc tataaagacg gcgaaaagtc agaatcaacc aaaaggagat       300
     caggttcggt agcttacaac atccagcggt cgtggtcctt gtggaaaagg ttgcggaaag       360
     caacacacat gtagtccggc caaagaaggt gaaagctgct gaaaagaaac aagaaggatt       420
     aggaatatga aagtacagtg ggctgggtaa aatattcgtc actcacccta cctagcagac       480
     aaaagagaaa aacagaaaag ttaagaaaaa gaagggaaga aaagatatgt cagaaagcga       540
     aagaaacagg cagacattca atagaaaaat tagaagaagt ttagagtttt ttttgaaccg       600
     cggatccgaa ataatgactc cgccagctac acgttcccaa gccaatcaga aagtgaaccg       660
     agacataaag gatatcactc ctccccaggg gtttatgatg gatggtagcg cagcctttga       720
     gatcagcgac cagcaggata tgacgggagc agtggggggc gtggaagcac atattagcga       780
     cggagttccc cgcggcgacc aacacaatct cactagcgat gaggaaggga agagtcctgt       840
     gcatttaggt aaagaaatag agtcagccat taatttagct ctattacaag ctcatgaaac       900
     ttaccgtaaa gcggcgtcca ttgaggtctc tgctttccag aagcaaatgc aacaggagat       960
     gatgaatttc atgaaggaaa tcaatcagat cgtccgccct acagggaagg cacaggcaga      1020
     cactcaggag cctcctccta gaccatcgat ggaagcagcc aggcctaatc cagcgcagca      1080
     gcgagctgat ggcagactct gggaagagca acagagggta tgggcgggtt ggcatcagta      1140
     tagccaacca ccgcctttgt tcaggccagg agtttcagct gccggaagtt tgaatgggaa      1200
     tccaagtggc gggcataggg attacaaacc cgagatgagc catcccagga agtggggtat      1260
     atccttcgat ggcggaccta ggggaatgcc aattggtgaa tttatattcc ggatagagca      1320
     tctacagatg gcttaccaag tcacgtggga agaggtcctt cgatcgtttc actgcctagt      1380
     agatggtcaa gccaaggagt ggttttggat gcacgtacgc acaacgggat tgagggattg      1440
     gccaaatcta aaaaacgcgc tgcaacaacg tttccaaacg ctgcgttcga acttcgagcg      1500
     tgagcgagaa ctacgcgagc gaaagcaacg accaggagag agcgtggatg aatatctgca      1560
     ggcgatgctg agcctccgat cccagttgga catcaacatg tccgaccacg acctaataag      1620
     gacaattaaa gtaaacatca gagacgggat atcgaggata atatatccga tgtggttaac      1680
     taacctggaa cagctgaggg aggaatgcca cgaagccgag agggttttgg ccaatcgctg      1740
     gtcgcgcaca tccgggatgc aagagcacca gagaccaccg agggagaagc accaggttca      1800
     cgaggcatac atatcccagg agccagacga ggactctgag tttgtagagg ccatttcccg      1860
     gggcagagaa ggcggagcgc aaagtacgtt ggtctgctac aattgctcta tgccgggaca      1920
     cacgtattac acgtgcgact cggaggtcct taataagttc tgctaccgat gcgggcgaca      1980
     gggagtacga tttactcggt gtccgaaatg tcaggcggga aacgcgagat ggagcttgac      2040
     gcaaccggag gagtcccgct cccatcccaa gacgacaaat taactgcctc cgaggatctg      2100
     aaatatatgt taaaagataa atataagtca gtgtgtaaga agatattaat aaataaaaat      2160
     aaaaacaagg taaatatagg aacaaaatac gtggccagac cgattgaaga aagggaacgc      2220
     gactatcagc aggcaaggga aaggatattt ggagaaccaa ggggagatag ccattcccgc      2280
     aagtcggcga ggataatccg agcccggagg cgttaccagc aacgaaaaca ggaacgaaga      2340
     gaggtctgca cagctataat atcagcagct acgacggaaa accgagcgtt tgccgaggta      2400
     ttggttgcaa atcacccaat gcaggggctg cttgacacgg gagcatcgaa gagcatccta      2460
     ggagacgggt gtatggacct ggtaaagcgg ctggaactag aagtattgaa agtgagatct      2520
     acagtacaga cagcaggcgg ggcaacacac cggatagcgg gtcgcataga ggtggacgtt      2580
     tgctataaac aggaaactca ccgcatatca ttgctcctat gtccctcact gcggcaaaaa      2640
     ctatacttgg gaatagactt ttggcggaaa ttttcattag ctccggacgt cgtaggggta      2700
     ggtgaattgt cgtcgattga gaatgagttc catgttacga gcgaaccggt agaaccacac      2760
     atcctgtctg aggaagagaa aacacagttg gagttagtgc aggataagtt tctaacttac      2820
     gaaagacacg gcatgggact gacggaattg gaaacgcatt ccatacaact ggaggcagga      2880
     acagtcccag taaaggaaag gttctatccg gtgtcaccaa aagtccagga attgctctat      2940
     gcggaagtag acgaaatgtt gcgattaggt gtaatcgaga ctagtgaaag cccttggaac      3000
     aatagagtta ctctggtcca aaaacctggg aaaaaccggt tatgcttaga tgcgaggaaa      3060
     ctcaataagg taacgatcaa ggatgcttac ccattgcaga atatagagtc gattctgagc      3120
     cgagtggatg aaaccattta cattagcagt gtggatttaa agcatgcgtt ctggcaaatt      3180
     gagctggacc aaaaaagtag ggagtacact gcattcacca tcccgggaag gccgttgtat      3240
     caatttcgga ggatgccgtt tggtttatgt aacgctgctc aacggctatg tcgactcatg      3300
     gaccgggtca tccctcagaa gctcaggagc aacgtctttg tgtacctaga cgatctgttg      3360
     attatttcga aaacgttcaa ggatcatatg cggatactta ccgaggttgc caagagctta      3420
     cagaacgcca acctcacgat cgggctacac aaatccaagt tctgcttccg attcctkaag      3480
     tatctgggtt ttgtaatcgg agagggctcc ttgaggacag atccggggaa gattcaggca      3540
     atagccaaga tcccagtgcc aaagaatgtg agacagttga ggagtttcct aggaacagct      3600
     ggatggtaca ggcggttcat tcgaggtttt tcagatgtat cggcgcctct gacggactgt      3660
     ttgaagtcaa agacsaagtt caagtggaca cctgcagcag aagagggatt taacaaacta      3720
     aaaacagcac tcacctcagc tccagtgctg atacatccag attttcagag cagattcttc      3780
     gtccaatgcg acgcgagcca tgtgggkatt ggtgcggttc tcttccaaaa ggatgtggat      3840
     ggaaatgaga gaccgatagc gttttactct cagaagctgc gaggagctca attgaactat      3900
     acggtgacag aaaaggagtg cttagccgca gtgaaagctg tgaacagatt tcgcccatat      3960
     atagaactct tacccttcac agtcatcacc gatcattcca gtcttcaatg gctcatgacg      4020
     ctaaaagacc taaacggacg attggcgcgg tggtcgttgg cgttacaggc atatgatttc      4080
     caaatagagc accggaaggg gaaagataac gtggtggcag acatgttgtc ccgtatcccg      4140
     gaggtagaag ccattgaggt gttcgatttt gaaaccattg aattcgaaag tcccgagtat      4200
     ctggaaagaa tccaaacggt gaaggaaaat kcggagcagt ttccagattt agtggtggaa      4260
     gacggcctct tgctcaagcg agtagamttt gtgaccgggg acacacagga atttccgtgg      4320
     aagctgtgga ttccggaagc gttaackaat accttaatcc agcaagcaca cgacagcgat      4380
     accgcgatgc acggaggcat aggtcgcacg cttaacaggc ttaggcagtt ctactactgg      4440
     cccaagatgg caatccaggt gaaaaactat gtaaaagact gcaacatctg caaggaaacc      4500
     aaacacacaa cccagatgac taggccgaaa atgggcaaac aaacaatcac ctcacgaccc      4560
     atgcagcagc tgtatatgga tttcctggga aaatatccac ggtcgaaaag gggcaactgc      4620
     tacatattgg tagtgctgga tcatctgacg aagtttgttt ggttaaaagc aatgccaaaa      4680
     gcgacagcag acgcagtcgt cagatatctg gagtcggaaa tatggcatga gtttggtgtt      4740
     ccagaggtwa tactcaccga caacggagtc cagtttgtag caagccggtt tcaaagtttc      4800
     ctggagaagt atcaaattcg tcataagagg accggcaggt atgctccaca gtcgaatgcc      4860
     tcagagcgcg tgaaccaatc cgtacttgcg gctattagga tccatgtagg ggaagaccac      4920
     acacgttggg atgacaagat agtcgagatt caaggttctc tgcgaagtgc cgtccacaat      4980
     agcactggtg tctccccata ctttgccatg tttggccaac acatgttcct gagcgggcag      5040
     gattatagga tagcccgaaa actagacgcc gtaaacgacg cccagataca gagtctatct      5100
     cgaacggatc ggcttcaact aataagagaa aaggtaacag aacgcattaa tgaaacatat      5160
     gagagatcag ccaaacaata taatagaaga gctaaagaaa tcaagtacct acctggccaa      5220
     gaaatcttta agcgaaactt catcctcagc gatttcaaga acaacataaa tgccaagttt      5280
     tgtcgcaaat actccaagtg ccgcatagta agacccgtag ggaataacct atatgagctg      5340
     gaaacattac aagggaaacg attgggagta tttcatgcga aagatttgaa acaataattg      5400
     cagcataggt acatacacac gtgcaaatac gtacccaakt aatggcccgg ctaacccttt      5460
     caaagcggca ggacgaatat atctcagggc gtgggcgtgg cctgcgttgg gctactggca      5520
     gcctcaattg cactcctgtt ccattgacaa gtaaacgaaa ccgtagtgtg g               5571
//
ID   Gypsy-15_DTa-LTR repbase;    DNA;    INV; 1018 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   10-AUG-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DTa_;
KW   Gypsy-15_DTa-LTR; Gypsy-15_DTa-I.
XX
NM   Gypsy-15_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1018
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1625-1625 (2012).
XX
RN   [2]
RP   1-1018
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 1018 BP; 343 A; 174 C; 239 G; 262 T; 0 other;
     tgttatggtc tgccagaaat aaagaaaata agcattaaca aaatcaaaac ataccaaacg        60
     accgcgtacc tgggttagag aggagcaaca gatgccgata ctagggatgg cctgggaatg       120
     gagaactggt tccggagtcg tgctggttcg tggcggaact agtagaatag tgggcttaag       180
     ctaggtttaa atttcggaaa actctctctc gaaaatggaa ttgagccgac ttacaagaag       240
     ggcaactaaa gggcaaatga gacccatcta gaagcggaga aagagtagtc gtgcctgtgg       300
     gaaaaaaaat tccaatgggg gcgggggggc gcgcttccgg cgccaaattc aaagtctggg       360
     agtctgcgag gaaaaggaat taaacttgga ggaaaccata ggaaaattga ttatcgccgc       420
     ccacatctgg gtggtgccag gtttttttat tttaagttta gtgttaaagt taataaaacc       480
     atataataat caacaataac cacaaaccac aaactacaaa ctacaaacta cgaatctgct       540
     tctactaaat taaaatatta atgtaaccct atatatatat atattattta ttcatttatt       600
     tatacgtata actatttatt catgtgtgat gtaatcgtcc ctgtggtacc caggttaggg       660
     aattgttaag aaatgaatgt tatttatatg aactttgtga attaaagtgg aaaagaaaaa       720
     tgagcgagta gagagttaaa aatggggtga ggtgacgcgt aaaagaccca gtatccagtg       780
     tcggggagtt gattgaaagg tacatcagct caaggatggg agggtgtatt ccgcggccat       840
     taacagcagg tccgcagtcc ttgtttccat tcatttttaa agtgtcatca agtctgaata       900
     aaataaataa tactgtgtgc cgacaaatcc aaccatcgtg gtcatactca cgcttgagat       960
     atccgattgc tagccggaat ccgatggttg gatcaccaaa ataagtcgag acataaca        1018
//
ID   Gypsy-15_DWil-I repbase;    DNA;    INV; 6304 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DWil_;
KW   Gypsy-15_DWil-LTR; Gypsy-15_DWil-I.
XX
NM   Gypsy-15_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6304
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   99.9% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..1788
FT                 /product="Gypsy-15_DWil-I_1p"
FT                 /translation="MISDCSDEELVELCKEIKSSAESEENKTKMNAQEVFN
FT                 LMQEAVKSALNAQSQQFSTHLEEKIGDLTRQVNELKMSTPEVEVFETVKIV
FT                 PGVECKEPLDIVRSVPEFSGSQAEYVAWRSAATFAYDLFRPYNGSSTHYQA
FT                 VGIIRNKIRGTASSTLSSYNTALNFDAIISRLDFTYADKTPARVIKQKLGI
FT                 LRQGELSLLEYYDEIEKTLTLLTNKTLMTYDTSTALTLNEQHREDALHSFV
FT                 SGLEKSLKAHVLPARPKTLPIALAMAQEAEASNEYANFAATFAKVADDKNK
FT                 NSVNNQEQSKKSQYHQDGNSNSGHNKNPHFTKKQNYHGKGNQSARQYNSSK
FT                 SKFQGRNPIQPVEPMDVDPSTSRFKQPTAYQQRKPFANSTQSRQNVNHNQV
FT                 VPDGDEDYESKAEDAVTHFEDEQSDIEACNFLGQHPSSRTSLNNCTGEQ"
FT   CDS           4821..6302
FT                 /product="Gypsy-15_DWil-I_3p"
FT                 /translation="NIFHYFLIFNISFRIKLLLPILTALLVASVKLTDYSM
FT                 SNYIPVMDGDVTIWDDYAYLGHTTNVTSYQTYAEETRVLVESFKQEHVRKV
FT                 ILADIDRISTLIGTLRVHHRYARSLNILGTALKVVAGTPDFDDWEQVKFRQ
FT                 NQLSEQGNRQIEINSKLQDRLNKLTNSLNEISKIDELNIEHLFETVLAKNR
FT                 MVISDLQNLILTITLAKANLISPVILNDLDIEEIKNKHLTNISVTDILEVA
FT                 SIKAFQNNEILHFLIKYPNPKLACKKINVYPVQRKNIVLDFEKGSIVADCG
FT                 TESYAVTGCDVAVSTTFCRRSPTPNCAQNLISGTPARCGTRSSHLDPLTVV
FT                 DDGIIIINDVTATITNRVNQTQVVAGTYLATFDDEVTINGTLFINNYGALK
FT                 KKPMVAAISQINITSHREKLSLPLLHELSLTNLQNIGQLRSNLVSGSIISS
FT                 GATLAISAVAIFIIYEVRRRWKLKHQAQLITSLKTALKKSEDVHHLAEG"
FT   CDS           1731..4817
FT                 /product="Gypsy-15_DWil-I_2p"
FT                 /translation="FFRPASFLPYIIKQLHGRTIKILVDTGASKNYIKPLS
FT                 ELEHIVPVQSPFQVKSIHGSSSVTKKCKISLFGEKSFFFILSTLADFDAII
FT                 GLDLLRKVNATINFTKSKIFFNGGSEDIMLHKCADVNFIEINDEDVPLAIK
FT                 EKFKKMIKLRASSFADPKIALPFNINTVATIRTQGEPVFSRPYPYPLGVSD
FT                 FVNTEIKQLLKDKIIRPSKSPYNNPIWVVDKKGVDELGHKKKRMVIDFRKL
FT                 NQVTVSDKYPIPSITTILSNMGKSQYFSTLDLKSGFHQIELAEGDREKTAF
FT                 SVNSGKYEFCRLPFGLKNAPSIFQRAIDDVLREHIGKICHVYVDDVIIFSE
FT                 TKEDHVKHIDIILQCLGDAGMRVSQEKSKFFKKSVEYLGFVVTRGGIKTSL
FT                 EKVQAIQSIKPPTSLYELRSFLGLSSYYRCFIKNYAAIARPLTEILKGDNG
FT                 KVSTNHSRKVKVELTATQLQTFDRLKNILASEDVMLRYPDYKKPFDLTTDA
FT                 SGHGLGAVLSQDGRPITMISRTLRDNEPDLATNERELLAIVWALKTLRNYI
FT                 YGVRDLNIYTDHQPLTFAVSDRNTNAKIKRWKSIIDDHNAKLIYKPGKENK
FT                 VADALSRQNINALQSQESDIATIHSEESLTYTIDSTDKPVNCFRNQIIIEE
FT                 ADFPSVRTFLLFQTKTRHVIQVSDRSTLMQTLQDVVNADVVNAIHCELPVL
FT                 ALIQHSLVEMFPTTTFRYSKYLVSDIPDRTEQREILTTEHNRAHRAAQENV
FT                 KQVLRDYFFPNMNRLATEIAANCKICSVAKYDRHPKKHILGVTPIPSFAGE
FT                 ILHVDVFSTDKKLFLTCLDKFSKFAVVQPIASRAIVDIKAPLLQLINLFPK
FT                 IKTIYCDNERSLNSETIKSLLSNNFDIHIANAPPLHSTSNGQVERFHSTLT
FT                 EIARCKKLSSQTNETVDVILMATIEYNRTIHSVTNKQPIEIVHTSTAEMEA
FT                 TIRKKLEKTQIKQLEQGNKKRAEKRYRVGDKVWVKSNKRLGNKLTPLYTEG
FT                 TVEADLGTSVLIKGRVVHKDNLR"
XX
SQ   Sequence 6304 BP; 2243 A; 1242 C; 1204 G; 1615 T; 0 other;
     ggcgcccaac ggcataagaa aaatatttaa tatttaaaat aaatatatta aaataaataa        60
     tcgaaactcc gtgggtgaaa gtctacgtaa accaaacgcg aatccacgaa acacaacgcg       120
     tgtgaataac aacaattcaa aaaatttttt gtggaaacat aaaaccatta ggagagctaa       180
     aggcgaaaaa ctacaaatcc aaacatcgaa caacgtcatc accgcccgtc acaccgacat       240
     ctgactgaca cttggggaat ttgttataac taaaataagg aggaaatatc ttaaattgca       300
     gtcaatgtat ttcatgtaag tgagattttt gttcttgatt tccatttttt tccatttttt       360
     aataaaaaaa ggaataaata ataaataaaa aaatatatta aaattttagt tataaaacaa       420
     aatttgctct aataaagtgt aataggaaaa aaattcctta tgataagtga ttgcagtgac       480
     gaagagttgg tagagctgtg taaagaaata aaatcgagtg ctgaaagtga agagaataaa       540
     acaaaaatga atgcccaaga agtatttaat ttaatgcaag aagcagtgaa atctgcttta       600
     aatgctcagt ctcaacaatt ttcaacacat ttagaagaaa aaataggaga tttaaccaga       660
     caagtgaatg agttaaaaat gtccacaccg gaagtggaag tgtttgaaac agtaaaaata       720
     gtaccaggag ttgagtgcaa agaaccactt gacatagtga gatcagtccc tgaatttagt       780
     ggtagtcaag cagagtatgt tgcatggcgg tcagcagcaa catttgctta tgatttgttc       840
     cgcccataca atgggagttc gacacactac caggcagtgg gaataatcag aaacaaaatt       900
     aggggtacag caagttcgac tctttcctct tacaacaccg cgttaaactt tgacgccata       960
     atttcaagat tagactttac atatgcagac aaaactccag ctcgtgttat aaaacagaaa      1020
     ttgggtatac ttagacaggg agaactatct cttttggagt attacgacga aatcgaaaag      1080
     accttaactc tcttgacaaa caaaacgtta atgacgtacg atacatcgac ggctttaacc      1140
     cttaatgaac aacatcgcga ggatgcgtta cattcttttg tttcgggact ggaaaagtcc      1200
     ctcaaagcac atgtcctacc ggcaaggccc aagactctgc caattgcact tgcaatggca      1260
     caagaggctg aagccagtaa cgaatacgca aatttcgctg caacctttgc aaaggttgca      1320
     gacgacaaaa acaaaaattc ggttaacaac caagaacaat caaaaaaatc acagtaccat      1380
     caagatggta actcaaattc gggtcataac aaaaacccac atttcactaa aaaacagaac      1440
     taccatggca aagggaatca aagtgccaga caatataata gctcaaagtc caagtttcaa      1500
     ggcagaaatc caattcagcc tgttgagcca atggatgttg atccatctac atcgcgcttt      1560
     aaacagccaa ctgcatatca acaaagaaag cctttcgcaa attcgacgca aagccgtcaa      1620
     aatgtgaatc ataatcaagt tgtgccagac ggtgacgaag attatgaatc aaaagcagaa      1680
     gatgctgtaa cacatttcga ggatgagcaa tccgacattg aagcctgtaa ttttttaggc      1740
     cagcatcctt cctcccgtac atcattaaac aattgcacgg gagaacaata aaaattctag      1800
     tagacactgg ggcatcaaaa aattacatta aaccattgtc cgaattagaa cacatagtcc      1860
     cagtgcagag tccgtttcaa gttaaatcta tccatggctc ctcttctgtt accaaaaaat      1920
     gtaaaatcag cctcttcgga gaaaaatctt ttttcttcat tttatccact ttagctgact      1980
     ttgacgctat tatagggtta gatcttttaa gaaaagtaaa cgccactatc aattttacga      2040
     aaagtaaaat tttttttaat gggggctctg aggatattat gttgcacaaa tgtgctgacg      2100
     taaacttcat tgaaataaat gatgaagatg ttcctcttgc tataaaagaa aaatttaaaa      2160
     aaatgattaa gctaagagct tcttccttcg cggaccccaa aatagcttta ccttttaata      2220
     taaacacagt ggcaaccatt cgaacacagg gagaacctgt attctcaaga ccatacccat      2280
     acccattggg ggtatctgat ttcgttaaca cggaaataaa gcaacttcta aaagataaaa      2340
     ttatacgacc atcgaaatcg ccatataata atcccatttg ggttgtagat aaaaaaggcg      2400
     ttgatgaact cggccataaa aagaaaagaa tggtcattga ttttcgaaaa ctaaaccagg      2460
     taactgtgtc ggacaaatat ccgattccct ctattacgac aatactgtcg aacatgggaa      2520
     aatcacagta tttctcgact ttggacctaa agtcgggatt ccaccagatc gagctggcag      2580
     agggggatag ggagaaaacc gccttctctg tcaacagtgg gaagtacgaa ttttgtcgac      2640
     tcccatttgg actaaaaaac gccccaagta tttttcagag ggccattgat gatgttctac      2700
     gagaacacat cggtaaaata tgtcacgtct acgtggacga tgtcattata ttttccgaaa      2760
     caaaagaaga tcatgttaaa cacattgaca taattcttca gtgtcttggt gatgcgggca      2820
     tgagagtttc ccaggaaaaa tcgaagtttt tcaaaaaaag cgtcgaatac ctcgggtttg      2880
     ttgttactag gggaggtata aaaacttcac tagaaaaggt tcaggctata cagtctatta      2940
     aaccaccaac atctttatac gagctaaggt catttttagg cctatccagc tattataggt      3000
     gttttataaa aaactatgcc gcaattgcta gaccacttac ggaaattctt aaaggagaca      3060
     atgggaaggt tagcaccaac cactccagaa aagtcaaagt cgaacttaca gctacacagc      3120
     tgcaaacatt cgatagactt aaaaatatct tagcctctga agatgtcatg ttaagatacc      3180
     cggattacaa aaagccattt gacctaacta cagatgcctc ggggcacggc ctgggagcag      3240
     tattgtcgca ggatggaaga cccataacaa tgatctcgag aacattgcgg gacaacgaac      3300
     ctgacctggc gactaatgaa agggaactct tggcaattgt ttgggctttg aaaacacttc      3360
     gaaattacat ttacggagtt agggacttaa acatttatac cgatcatcaa cccctcacct      3420
     tcgcagtgtc cgatcgaaat acaaacgcaa aaataaaacg atggaaatct attatagatg      3480
     atcacaacgc gaagcttatt tataagccag ggaaagaaaa taaagtcgcc gacgcgctgt      3540
     cgaggcaaaa tataaatgct ttacagtctc aagaatcgga catcgctaca atacatagcg      3600
     aagaatcact gacctacacc attgactcaa cggacaaacc ggtcaattgc tttaggaatc      3660
     aaattatcat tgaagaagca gatttccctt cggtaagaac attcttactt tttcagacaa      3720
     aaacaagaca tgttattcaa gtgtctgata ggagcacatt aatgcaaacg ttgcaagatg      3780
     tggtaaatgc ggatgtagtc aatgcaattc actgcgaact tccagtgctt gccctcattc      3840
     agcatagtct cgtagaaatg ttcccaacta caacttttag gtattcgaag tacctagtca      3900
     gcgatatccc tgaccgaacg gagcaaaggg aaatattaac cactgagcat aacagagctc      3960
     atcgagcagc tcaggaaaat gttaagcaag tacttcgcga ttattttttt ccaaatatga      4020
     acaggctagc aacagagatt gctgcaaatt gcaaaatttg ttcagttgca aaatatgaca      4080
     gacaccctaa gaaacacata ttaggtgtca cacccattcc ttcttttgca ggagaaattc      4140
     tacatgtcga cgtcttttca acagacaaga agctctttct tacatgtctt gacaaatttt      4200
     ccaagttcgc tgtagtacag cccattgctt cccgagctat tgtcgacata aaagctccat      4260
     tactccagct aattaacctc tttccgaaaa ttaaaactat ttattgtgac aacgaacggt      4320
     cactaaattc tgagacaata aaatcattgt tgtcaaataa ttttgatatt catattgcaa      4380
     atgcacctcc attgcatagc acttcgaatg ggcaggtgga gagattccat agcaccctga      4440
     cggagatcgc aagatgcaaa aaacttagtt ctcaaaccaa cgagacagtt gatgttatac      4500
     tgatggcaac aatagaatat aacagaacca tccattcggt gacaaacaag caaccgatag      4560
     aaatagtcca tacatcaacc gcagaaatgg aggcgactat tcgaaaaaaa ctcgaaaaga      4620
     cgcagatcaa acaattggaa caggggaata aaaaaagggc tgaaaaaaga tatcgagtag      4680
     gagacaaggt atgggtgaaa tctaacaaac gattaggtaa caaactgacc ccactctata      4740
     cagagggtac ggttgaggca gacctgggaa cgtctgttct cataaaaggg agggtggtcc      4800
     ataaggacaa ccttcgataa aatatttttc attattttct aatttttaat atttcattta      4860
     ggattaaact tttgttgccg atactaacgg ctttattggt ggcttcggtg aaattgacgg      4920
     attactcgat gtccaattac atacctgtaa tggacggaga tgtaactatt tgggatgact      4980
     acgcgtacct tggacataca acaaacgtga cgtcatacca aacctacgcc gaagaaacga      5040
     gagtgttggt ggagtcgttc aaacaagaac atgtgaggaa agtaatacta gcagatatcg      5100
     atagaattag tacactaata gggacattaa gagttcatca taggtatgct aggagcctaa      5160
     acatattagg cactgctctt aaagtagttg caggtacacc cgattttgat gattgggaac      5220
     aagtaaaatt tagacaaaat cagttaagcg aacaaggaaa tagacagatt gaaataaata      5280
     gcaaactcca agatagatta aataagctca ctaactcttt aaacgaaata agcaaaattg      5340
     atgaattaaa tattgaacac ttatttgaaa ctgtcctggc aaaaaataga atggtaattt      5400
     cagaccttca aaatttgata ttaactatta cacttgctaa agcaaattta atcagccccg      5460
     taattcttaa tgaccttgat attgaggaaa tcaaaaacaa acatctcact aacattagtg      5520
     taactgatat cctagaggtg gctagcatta aggctttcca aaataacgaa atcctacact      5580
     ttctaattaa atatcctaat ccaaaattag catgtaagaa aattaatgtt tatcccgttc      5640
     aaagaaaaaa tatagtttta gattttgaaa agggtagcat agttgcggac tgtggtacag      5700
     agtcgtatgc ggttactggg tgtgatgtgg cggtgagcac aacattctgc agaagatcac      5760
     caacaccaaa ttgcgcgcag aacctcatat ctgggacacc ggcgagatgc ggcactcgtt      5820
     ccagtcatct ggatccactg acagtggtag atgatggaat aataatcatc aatgatgtca      5880
     ccgcaaccat caccaacagg gtcaatcaaa cacaagtggt tgctggcaca tacctagcaa      5940
     cattcgatga tgaggtaacc attaacggca ccctgttcat taacaactat ggggcattga      6000
     agaagaaacc aatggttgca gctatctccc aaatcaacat aacaagccat cgggagaaac      6060
     taagtctgcc acttctacat gagctaagct tgaccaacct acaaaacata ggtcaacttc      6120
     gctccaacct ggtatctggt tccatcatca gtagtggtgc tactttggcc ataagtgcgg      6180
     tggcaatctt catcatctac gaggttcgtc gccgttggaa attaaaacat caagcccagc      6240
     tgattacaag ccttaagacc gctttgaaga agtccgagga cgtccatcac ttagctgagg      6300
     gagg                                                                   6304
//
ID   Gypsy-15_DWil-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_DWil_;
KW   Gypsy-15_DWil-LTR; Gypsy-15_DWil-I.
XX
NM   Gypsy-15_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-292
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 292 BP; 86 A; 58 C; 68 G; 80 T; 0 other;
     agttatgacg agccaagcaa aatagtgagc ggaagcaatt gcaacatagt cacagtagct        60
     gtgtcagcta tttagtcggt ctcacggtcg tccgaaatat gatcctccag ctgaggcgca       120
     ttgaccgcgg ccaccagcga ggcacgaggc gctgattcag caattcttgg ttggctgtgg       180
     gcttctttgg gtctttataa gatattataa gtttagtttc taaatatatt tcgagtcggc       240
     aagttagccg ctaataaaga gaacaataat taaatatcca acttaaataa ct               292
//
ID   Gypsy-15_HeAr-I repbase;    DNA;    INV; 5222 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5222
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5563-5563 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..5220
FT                 /product="Gypsy-15_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPRTRQRQSLNGSHAEDLNDSVTMSRDNFTALLTTIQ
FT                 QSNADMCERMLQRLSATASTPTASPAPTPSAAERTGNFARCTSRFSGSAKE
FT                 NVETFIDAIEAYKECTNIYDDVAIKGMSMLLTDDAATWWQSIRSEVSSWND
FT                 VIKYLRDAYGDRRPEYKIYRELFRIEQAEDVRTDIFIAKSRALLSRLPAGD
FT                 LSLKVQLDMVYGLLHRKIRKRLRREEFNNFSELLNKSRIIEETIAESTKSE
FT                 ALYSAPKNTAAKQPAMYSNARAEPHGAPAARRNDGGGGPLQAPARPLPARP
FT                 RSPRDETAPTPREPRAPRPPPERAPASTTRQEQTHTSSPASSRPASRPFCV
FT                 SCRRFGHRKEQCRKSTGTGEAAAQTNNNPVSCYQCGTQNVTRENCKQCNNE
FT                 QSFYSIAPRCVSYSKSTQQSNHNISNNSYVANCIESTSHSNIFSNNNCVQQ
FT                 NSGSCDSPRINEQPSKQKLDSRYLRKQNSTCSTNNLKLNKEFADVHLTSNV
FT                 VKCYHEYVTKNNSKDNMIIDNAHCELGCKRQLSTIVPENILCCDDADDDYS
FT                 SHYFNMCNDARDIEGCNQYACNLFSDSFCSCNCFKHKLDIKVCSDTIYCDE
FT                 STRAGDGNHDKLGVVSRPIFNIKILGASGTALVDTGAKNCIAGHTLHILLR
FT                 RKGHPLQPARRRIKLADGHARELDVLITTLDVHLEGKVVQAPFLILPDARQ
FT                 NETLLGMDFLLAASLIMDFARKCWCFSETRHVEYPMQFEPSILPQLSCSSA
FT                 DVLREDEGTVLTQPERDLLEQTLVDNGDIFQLGGEPTPYAEHRIDTGEHPP
FT                 ISVPPYRLTPAKKELMRQEIEKMLKDDIIEDCESAWCSPALLVPKANGSIR
FT                 FCVDYRRLNAVTKTDHYPMPLIDELLQSTKRDCYMSTLDLRSGYWQVSVNE
FT                 QDRDKTAFISPLGTFRFKRMPFGLKNAPSTFQRLIDRLRSCSSLANVTILA
FT                 YLDDLLIISEGFQQHLEDLRSVFSRLREFKLRVNRDKCVFARGSVQYLGHV
FT                 ITQQGISPDPDKVKAVLDMHEPNNLKHLRTFLQTCSWFRKFIPNFSAVAEP
FT                 LTRLTRKSQTWTWGTTQSSAFHDLKRLLTSAPVLVQADFNRPFILRTDASN
FT                 YALGAVLLQGEDKEERPIEYASRLLTAAERNYSTTEREALAVVWAVERFRC
FT                 YLDGHPVIIGSDHQPLRWLMTLKSPTGRLVRWALKLQSFDIQYQYTPGKAN
FT                 VVADTLSRPICSPDTRDSCGICTVIVDIPARSPEELRREQLADPEIQKILT
FT                 DMESTDEVASRRWTERGYLLSLGVLYRYNPDSDSESPQLVIPLSLRPEILK
FT                 ECHDSPLAGHSGIDRTYLKIAQSFYFPGMRRIVTDYVKACVDCQRYKAANN
FT                 KPPGLLQTPVLQQRNEVLAVDLFGPLPEGENGERWILLVEDTATRWVELFA
FT                 LQEATAEACARVLTEEYFLRYGLPRRVTSDNGVQFVGAVMQQCMFILGVKQ
FT                 NFVPLYHPEANPAERKNRDLKVQLAQLVENDHGSWPAKLPVIRFALNSAVC
FT                 RTTGATPAFLMFAREMRSPTEARHDLRAILDKENFLPQITPYLRSFISNLA
FT                 AVRERVEGQQDQSKRFADQARRPSPKYKVGDKVLVRTHALSQGSKGLTAKF
FT                 FPKRDGPYVITKRVSPTTFIISPTENPADSLGKYHTQDITPFVDTGTGNAV
FT                 PPNPVRPKRRRGRPKRSGNELVQERGRSPELEGE"
XX
SQ   Sequence 5222 BP; 1381 A; 1354 C; 1274 G; 1213 T; 0 other;
     gatggcgtcc caactttagg gccttatacc tactatagtt ggtgttaagt ataaacaatt        60
     ggtgtagtta ttgttcgtgt acgtgttcga gtaccatagt gtccgtttaa aatgccgcga       120
     acgcgccaac ggcaatcact caatggctcg cacgccgaag acctcaacga cagcgtcacc       180
     atgtctcgcg acaactttac cgcactgctg acgactatcc agcagtccaa cgcggatatg       240
     tgcgagcgca tgctgcaacg cctgtccgcg acggcgtcca ccccgaccgc atcaccggca       300
     ccaacgccga gcgcggcaga gaggaccggc aacttcgctc gatgcacgtc gagattctcc       360
     ggatcggcga aggaaaacgt ggaaacgttc atcgacgcca ttgaggcata taaagagtgc       420
     accaatattt atgacgatgt ggccataaaa ggcatgtcca tgctgctgac agacgacgca       480
     gcgacctggt ggcagagcat tcgttccgaa gtttcgtcgt ggaatgacgt aataaaatac       540
     ctacgcgacg catacggaga tcgccgcccc gagtacaaaa tataccgaga attgtttaga       600
     atcgaacagg ccgaggatgt tcgaacagac attttcatag cgaagagccg agcgctgtta       660
     tcgcgcctac cagcgggcga cctatcattg aaggtgcagc tcgatatggt ttacggccta       720
     cttcatcgca aaattcgaaa acgcttacgt cgcgaagagt ttaataattt ctctgaactt       780
     ctgaataaat cgagaattat cgaagaaact atcgccgagt caacaaagag cgaagcgctc       840
     tactccgcac cgaaaaacac tgcggccaaa cagcccgcaa tgtacagcaa tgcacgcgcc       900
     gagccgcacg gagcacccgc agcgcgacgc aacgacggcg gcggaggccc gcttcaagcg       960
     cccgcgcgcc ctctccccgc gcgcccgcgc tcccctcgcg acgagacagc gccgacgccg      1020
     cgcgagccgc gcgcgccgcg ccctccgccc gagcgagcgc ccgcctccac aacacgtcag      1080
     gagcagacgc atacgtcatc accggcgtca tcgagacctg catcgcggcc attctgcgtg      1140
     tcctgcagaa gattcggaca ccgaaaggaa cagtgccgta agtcaacagg aacaggtgag      1200
     gcagctgctc agactaataa taatccggtg tcgtgttatc agtgcggtac acaaaatgtg      1260
     actcgtgaaa actgtaaaca atgcaacaac gaacaaagtt tttatagcat tgccccgcga      1320
     tgtgtttctt attctaaatc aacgcaacag tcgaatcata atataagtaa taatagttac      1380
     gttgcaaatt gtatagagtc gacgtcgcat tcgaacatat tttctaataa caattgtgtt      1440
     caacagaata gcgggtcatg tgatagtccg cgcataaacg agcaaccatc taaacaaaaa      1500
     ttagattcgc gttatttacg taaacaaaat agtacgtgct caactaataa cttaaaacta      1560
     aataaagagt ttgcggacgt tcacttgacc agcaacgtgg tgaaatgtta ccacgaatat      1620
     gttacgaaga ataatagcaa ggataacatg attattgata acgctcattg tgaattaggg      1680
     tgcaagcgcc aattatctac cattgtaccg gaaaacattt tatgttgcga tgacgccgac      1740
     gacgactatt cttcgcatta ttttaatatg tgtaatgacg cccgcgatat agaggggtgt      1800
     aaccaatatg cttgtaattt gtttagtgat tctttttgtt cttgcaattg ttttaagcat      1860
     aagttagata ttaaggtgtg tagtgacaca atatattgtg atgagagcac gcgcgccggt      1920
     gacggtaacc atgataaact cggggtagtt tcgcgaccaa tttttaatat aaaaatatta      1980
     ggcgcgtcgg gaaccgcgtt agttgatacc ggtgctaaaa attgtattgc gggccacacg      2040
     ctgcacatcc tcctacgtcg caagggtcat ccgcttcaac cggcgcgaag acgtatcaaa      2100
     ctcgctgacg gacacgcgcg cgagcttgac gtcctaataa ctactctgga cgtgcacctg      2160
     gagggaaagg tggttcaggc acccttcctc atccttccgg atgcacgaca gaatgagaca      2220
     ttactgggca tggatttcct cttggcagct tcattaataa tggattttgc taggaaatgt      2280
     tggtgctttt cagagactcg ccacgtggag tacccaatgc agttcgaacc ctccatcttg      2340
     ccacagcttt cctgttcctc cgcggatgta ctccgggaag atgaaggtac agtattaacc      2400
     caaccggaac gggacctgct ggagcagacc ttggtggaca atggggacat cttccagcta      2460
     gggggagagc ctacccccta tgctgaacat cgcattgata caggtgagca ccctcctatc      2520
     tcggtaccac cgtaccgatt gaccccggcc aagaaggaac ttatgcgtca agaaatcgag      2580
     aagatgctca aggacgacat cattgaagac tgtgagtctg catggtgttc tcctgctctt      2640
     ctagttccta aggccaacgg cagcatacgc ttctgtgtag attacaggcg cttaaatgct      2700
     gttaccaaaa ccgaccatta tcctatgccg ttgattgacg aactattaca atcaacgaag      2760
     agggattgct atatgagtac cctggacctt aggtcaggtt actggcaggt gagtgtgaat      2820
     gagcaagata gagataagac cgctttcatc agcccactgg gaacttttcg ctttaagcgt      2880
     atgcctttcg gactgaagaa cgcgccatcg acgttccaga ggttgatcga tcgtctgcgc      2940
     tcatgctcat ctctagccaa cgtcaccatc ctggcctatt tggatgacct cctgatcatc      3000
     tccgaaggtt ttcagcagca tctagaggat ctccggtctg tcttcagtcg ccttcgagaa      3060
     ttcaagttgc gggtgaatcg agataaatgc gtattcgcca gggggagtgt ccagtacttg      3120
     ggccatgtta ttacccaaca gggaatctca cctgaccctg acaaggtcaa ggccgttctg      3180
     gatatgcatg aacccaacaa cttgaagcat ctacgaacct tcttgcagac ctgctcgtgg      3240
     ttccgcaaat tcatcccgaa tttctcggcc gtggccgaac ctctgactag attaactagg      3300
     aaaagtcaga cttggacctg gggtacaacg cagtcctctg cttttcacga cctgaagcga      3360
     cttttgactt cagctccagt gttagttcag gcagatttca atcgcccttt tatcctccgc      3420
     accgacgcta gcaattatgc gctgggagcc gtcttgctcc agggggagga taaggaagaa      3480
     agacccatcg aatacgccag ccgtcttttg accgccgctg agcgaaatta ttcgaccact      3540
     gagcgagagg ctctagccgt cgtatgggct gtagagcgat ttcggtgcta cttagacgga      3600
     catcccgtaa ttataggtag cgatcaccaa cccctccgtt ggcttatgac gctcaaatcc      3660
     cctacaggac gcttagtaag gtgggctctt aaacttcagt cattcgatat tcagtatcag      3720
     tacaccccgg gaaaggcgaa tgtagtggca gacacactga gtaggcctat atgttcacca      3780
     gatacccgcg actcttgcgg tatctgcaca gtgattgtcg acattcccgc taggagcccc      3840
     gaagagttaa ggcgggaaca gcttgccgac ccggagattc agaagatcct caccgatatg      3900
     gaaagtaccg acgaagtagc gtcacggaga tggacagaac gcggatacct gttatcccta      3960
     ggagtacttt accgatacaa ccctgattcg gatagtgagt ctcctcagct cgtcattcct      4020
     ctctcccttc gtcctgagat cctcaaggag tgccatgatt cccccctagc gggacattct      4080
     gggatcgatc gcacttacct caagatcgct cagtctttct atttccctgg gatgcggagg      4140
     atcgttacag attatgtgaa ggcttgtgta gattgtcagc gatacaaggc tgccaataac      4200
     aagccccccg gactgctcca aacgccagtg ttacagcaac gcaatgaggt cttagctgtt      4260
     gaccttttcg gtcccctacc tgaaggtgaa aacggtgaga gatggattct tctggttgaa      4320
     gacaccgcta ccaggtgggt agaacttttt gccctgcagg aggcgactgc tgaagcttgc      4380
     gcacgagtgc taaccgaaga atacttcctt cggtatggtt taccccgcag ggtaacgtcc      4440
     gataacggcg tacaatttgt tggggcagtc atgcaacaat gtatgtttat cttaggggta      4500
     aaacaaaatt ttgtaccact ttaccatcca gaggcaaacc ccgctgaacg gaaaaaccgc      4560
     gatttaaagg tgcagctcgc ccaactcgtg gagaatgacc atggttcttg gccagcgaag      4620
     ctaccggtga tccgttttgc cctgaatagc gccgtttgta gaaccaccgg tgctactccc      4680
     gcatttctga tgtttgccag agagatgaga tcccccaccg aagcccgtca tgatttgaga      4740
     gccatactcg ataaagagaa cttccttcct cagatcactc cctacttaag gagctttatt      4800
     tctaacctgg ctgcggttcg agagcgagta gaaggacaac aagatcaatc caagaggttt      4860
     gctgatcaag cacgtagacc tagtcccaaa tataaggtag gtgacaaagt attagtccgg      4920
     acccatgccc ttagtcaagg gagtaaaggt ctgaccgcga aattctttcc caaacgcgac      4980
     ggaccctacg tgatcacaaa aagggttagc ccgactacct ttattatctc gccaacagaa      5040
     aatccggccg acagtctcgg taagtatcat acacaggata taacaccgtt cgtggacact      5100
     ggtacaggta atgcagtacc acccaatcct gttcgaccca aacgacgtcg cggacgtccg      5160
     aaacgctcgg gcaatgagct agtccaggag cgaggacgct ctcccgaact agagggggag      5220
     ta                                                                     5222
//
ID   Gypsy-15_HeAr-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-259
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5593-5593 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 259 BP; 55 A; 79 C; 73 G; 52 T; 0 other;
     tgtcgcaaat cgaattaccc cgcgcatttc tggacgccga caaactcgcg ttcccgctcg        60
     tttcctagaa tagacggaag gggcggggcg ttcgtagctt acgcgaatgc gcgccgacgc       120
     gccacgaacg cgcagcgacg ggcgcgccga catcttgttt tttagtcagt agacgcagga       180
     gccgcgcgcg ataagcatcg atcgcatgta ttattgctag atccgccgcg cgtgccctca       240
     caaaggttcc tctacgaaa                                                    259
//
ID   Gypsy-15_LH-I repbase;    DNA;    INV; 4106 BP.
XX
AC   ADOQ01003764;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_LH_;
KW   Gypsy-15_LH-LTR; Gypsy-15_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4106
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003764; Positions   16294   12189.
XX
CC   'GATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..1010
FT                 /product="Gypsy-15_LH-I_2p"
FT                 /translation="MPINHSPPSLPKMTTNPEEALGTQNILERATMLNSGP
FT                 SNSGESIEIHANEFRLLKLPIFWHKQPKLWFAQLESEFLIYRIQSDEIKFS
FT                 TVIRHLDEQALVAVAEIIERPPELDKYNHLKNALINRFTDSEEKRLRQVLA
FT                 GIELNDKKPSDLLREIRQLAGGAISANVLHSIWLQRLPYRVQATLAVVEEC
FT                 PLAKLAELADKIVDRDTGSLQVAAITPSAESNFKSGNLVDLERRIAALEVN
FT                 RSRDRSKSRNFERKRFRSSSRNKNALTDKKDEQICFYHKKFGKKAFKCTIP
FT                 CSMSKLLTEKTDKQEN"
FT   CDS           1337..3127
FT                 /product="Gypsy-15_LH-I_1p"
FT                 /translation="MKHKKLLDSITGLSQKGKLTNINQITICTTWHDSPFH
FT                 KILADFPELTHFAPITANRIHQVEHHIVTKGSPVATTPRRLSPEKLKFAKN
FT                 EFKHMMEQGICRSSSSPWAAPIHMVPKNGQDTWRLCGDYRGLNAVTLPDRY
FT                 PLPHIQDFTSGLHGKTIFSKIDLVKAYYQVPVAKEDIPKTAVTTSFGLFEF
FT                 LVMPFGLRNAAQTFQRLMNIILTGFDFCFCYLDDILVASSNIEEHHKHLRI
FT                 IFSRLKQFGLTVNVSKCLFGKEEISFLGYLVSKQGIKPTNEKIKTIINYKQ
FT                 PQTVQELRRFLGFINFYRRCLKNAASQQAILTDYLKDSKKNDKRPILWTEN
FT                 AIKAFNCCKEELLKATLLSHPAPTVPLILTCDASDIAIGASLEQIIDGINK
FT                 PIAFFLKKLDNAQRNYSTYDRELLSIFSAIKHFRYLIEGRQLLIQTDHKPL
FT                 VFAFRQKLDKASPRQIRQLDFIVQFSTEIQHISGKDNVVADALSRIEAISM
FT                 PVIVSLEELAEFQKEDEELVTLQANPSLKLQKLILTGTTTPILCDCSTENI
FT                 RPYIPQRLRRKIFDVVHNLSHPSGRSTCKMIQQKFIWSSMNKDIKEWARM"
XX
SQ   Sequence 4106 BP; 1412 A; 754 C; 705 G; 1235 T; 0 other;
     taattggtga ccccgacgtg atcggaaaaa tctaatttac ttgaagagcc gcgggaaatt        60
     taaattgtga acgacataat acgaagatgc ctattaacca ttcacctcct tcattgccga       120
     aaatgacaac gaatccagaa gaagcattag gaacacaaaa tatattagaa agagcaacga       180
     tgctgaatag cggtccatct aattcaggtg agtcaattga gattcacgcg aatgagttca       240
     gattattgaa attaccgatc ttttggcaca aacaaccaaa gttatggttt gctcagttag       300
     agagtgaatt tttaatatac cgtattcaat cagatgaaat aaaattcagt actgtaattc       360
     gtcatcttga tgaacaagca ttggtcgcgg tagctgaaat tattgaacga ccgcctgaat       420
     tagataaata taatcatttg aaaaacgcat taattaaccg ctttacggat tcggaagaaa       480
     aaagattgcg tcaagtttta gcgggaattg aacttaatga caaaaaaccg tcagatttac       540
     ttcgcgagat cagacaatta gctggaggag ctatttcggc caatgttcta cattcaattt       600
     ggttgcaacg tttaccatac cgcgtacagg caactttagc tgttgtcgaa gaatgtccgt       660
     tagctaaatt agctgaatta gcggataaaa ttgttgaccg ggacactgga tcacttcaag       720
     tcgccgcgat tactccgtct gctgaatcaa attttaaatc aggcaatctt gttgatcttg       780
     agcgcagaat agccgcatta gaagtaaatc gttcccgtga cagatcgaaa tctagaaatt       840
     ttgaaagaaa acgttttaga tcatcatcta gaaacaaaaa tgcattaact gataaaaaag       900
     atgaacaaat ttgtttttat cacaagaaat ttggtaaaaa agcttttaaa tgtactattc       960
     cttgttcaat gtcaaagtta cttactgaga agacagataa gcaggaaaac taagcttacc      1020
     gttgaaggaa gaggcgacag tcaacggttc acctaacaat cgtctcatcg tcttcgataa      1080
     aacttcaagt ttgaactttc tgattgatac gggagctgat atttctcttg ttcctaaaaa      1140
     aatatttcag aaatcttcaa tttctacatt aaaacttttt gctgcaaacg gtactaagat      1200
     agatacttac ggtacagaaa ctgtagctct tgatcttggt cttcgcagag atcttaagtg      1260
     gaaattctgc attgcaaata tccaacgacc tatcattggt gcagattttt tgagtcatta      1320
     tggaattcta gttgatatga aacacaaaaa attattagat tcaataactg gtttgtcaca      1380
     aaaaggaaaa ttgacaaata ttaaccagat tacaatttgt acaacatggc atgattcacc      1440
     tttccataaa atcctcgcag attttccaga attaactcat tttgctccaa ttacagcaaa      1500
     tagaattcat caagtggaac accacattgt tacaaaaggt tctccagttg cgactacacc      1560
     tcgtcgttta tctccagaga agttaaagtt tgcgaagaac gaatttaaac acatgatgga      1620
     acagggaatc tgtcgttctt caagtagtcc atgggcagca ccgattcata tggttcccaa      1680
     aaatggacaa gacacatgga gattatgtgg tgattacaga ggtttgaatg ctgtgacact      1740
     tccagataga tatcctcttc cacacattca agactttaca tctggtctcc atggtaagac      1800
     catattttca aagatagatt tagtaaaggc atactatcaa gttcctgtag ccaaagaaga      1860
     tattcctaag acagctgtca ctacttcttt cggcttattc gaatttttag ttatgccatt      1920
     tgggttacga aatgcagctc aaacttttca aaggctcatg aatataatat taacaggatt      1980
     tgatttctgc ttttgttatc ttgatgatat attagttgca tcatcaaata ttgaagaaca      2040
     tcacaaacat ttgcgtatta tcttttcacg tttaaaacag ttcggattaa ctgttaatgt      2100
     ttctaaatgt ctctttggaa aagaagagat ttctttcctt ggatatcttg tgtccaaaca      2160
     aggaatcaaa cctacaaatg aaaaaataaa aacaattatt aattacaaac aacctcaaac      2220
     agttcaagaa ttaagaagat ttttagggtt tattaatttt taccgtcgat gtttgaaaaa      2280
     cgctgcttca cagcaagcaa ttcttacaga ctatcttaaa gatagcaaga agaatgataa      2340
     aagaccaatt ctttggacag agaatgctat taaagccttt aattgttgta aggaagaact      2400
     tttaaaagca acattattat ctcatcctgc tccaacagtt ccattaattc ttacatgtga      2460
     tgcttcagac attgctattg gtgcttctct agaacaaatt atagatggaa ttaataaacc      2520
     tattgctttc tttttaaaga aacttgataa tgctcaacgt aattacagta cttacgatag      2580
     agaattgctc agcatttttt cagcaattaa acatttcaga tatttaattg agggacgcca      2640
     actattgatt caaacagacc ataaacctct agtttttgcc ttcagacaaa aattggacaa      2700
     agcgtcacct cgacagatac gtcaacttga tttcattgtt caattttcga cagaaatcca      2760
     acatatttct ggaaaagata atgttgtagc tgatgcttta tcgcgaattg aagcaatttc      2820
     tatgccggtc attgtttcat tagaagaatt agcagaattt caaaaagagg atgaagaact      2880
     tgtaacactt caagcaaatc cttcactcaa gttgcaaaaa ttaattctta ccggtacaac      2940
     aactccaatt ctttgtgatt gttcgactga aaatatacgt ccgtacattc cacaacgttt      3000
     aaggagaaaa atttttgatg tagtccataa tctatctcat ccaagtggaa gatcaacctg      3060
     taaaatgata caacagaaat ttatttggtc ttctatgaat aaagacatta aagaatgggc      3120
     aagaatgtga ttaccttgtc aacgtgccaa aatacaacga catacgaaaa atattccaga      3180
     aaagatagac attccagatc atcgtttcca acatgttcat ttagacttag ttggcccgtt      3240
     attaccatgt cagaattatc gatattgcct gaccatgatc gatagatttt cgagataacc      3300
     agaagctatt cctcttaaag aaatttcagc agaaaatgtt gcaactgctt tcttcaatca      3360
     ttggatagca agatatggat caccgaatac tatcacaacg gatcaaggac ctcaatttga      3420
     agcaactctc tttaaagctc tcaccaacct tattgcgagc ggataaggat ttctgcgtat      3480
     catccagcct cgaatggtat tctggaaaga tgacatcgta cattaaaaag tgctattatg      3540
     tgccatgcaa ataagaattg gttagaatta ttacctactg ttcttttggg tttacgtacc      3600
     tgttataaag aggatttaaa agcatcatcg gcagaaatgc tttatggaac aacattacgt      3660
     attcctggaa aattttttat tgaagaagat ctttctcctg atccttgtag aaaaacacag      3720
     gattcacatg agagaaatta aatctcaacc agtagcacat cacacaaaaa agacaccttt      3780
     ctgtcacaaa aatctttttg attgtactca cgtttggtta cgcaatgact cagtcagaaa      3840
     accgttacaa ccaccatact ccggtccatt ccgagttgta aatagaataa ataataatgt      3900
     ttttacttta gaaattgcag gtaaaaatgt caatgtcact atcgaacggc tgaaacctgc      3960
     attccttcct agagaaccaa atagagatca aacagattct acgttttctt ctactactca      4020
     cgagccactc agaacactca gaacatatac tggtccgaga aagaaggttc aattcgcaac      4080
     gtaggacatt gctcgggggg gagtac                                           4106
//
ID   Gypsy-15_LH-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   ADOQ01003764;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_LH_;
KW   Gypsy-15_LH-I; Gypsy-15_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-280
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003764; Positions   12188   11909.
XX
SQ   Sequence 280 BP; 98 A; 46 C; 29 G; 107 T; 0 other;
     tgtggcaatc gtcgcaacta actttaccgg caaagataaa atcttattta ctgacattga        60
     gttgtgatta gcaacaaaca aattattgat taattgccat agaaatagtt tatttaatta       120
     ctataacaac attagtattt cgttaatcat ttttatttgt ttatttcaca ctcctcatct       180
     gtacattata acattaacat caagttaaaa tatagaaatc ttaaaataca acttgatctt       240
     ttccttatca tatgtagtag ttctcatttt aaccgctaca                             280
//
ID   Gypsy-15_LMi-I repbase;    DNA;    INV; 4681 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 19.12, Created)
DT   15-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4681
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3387-3387 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..4679
FT                 /product="Gypsy-15_LMi-I_1p"
FT                 /translation="MDPALLQLLQKQQQQLDQQQQQLVLLTELITSSRPAA
FT                 APSPPPQAYPPAPPAFPAFQESKEDWDSYVRRLQQHFAAFKVTDPDLQKSF
FT                 FLSWIEPDTFRLLRKLAPLSEPAELSFSRMSELLSSYYRQQTHVVLSRLDF
FT                 HQSRKKPGQSYQSWVADLRGLSRKCGFVCANCQQSYADSLIRDVVVRSAPD
FT                 RAVRREALRLQDPTLDEVLSIAQAFEVSKAAADQFEEMVEVAAVQSSRPHR
FT                 RRSSPSSSSSSCSSRLPSAVPFRRRDFPSCPDCFRAHDRPHCPFRRARCAS
FT                 CRKQGHVAAVCRTSARGRPPYSDESQMEVNCLSTAPGQEQVTSSKIYVTLL
FT                 IQNRPFRFQVDTGASVSLVNLDTYLALGKPPLVKTSRRLVGYGEQPIPVLG
FT                 QFTIEVEYQHVVRAVTFLAVTSAASENIFGLDAFTAFGFSVHDAVHLVSDS
FT                 IPFNELDSLCREFGALFSAGLGMAIGYEAHITLKPTAVPKFCRARPIPFAL
FT                 RPAVKDELDRLHGLGIIEPVSSSLWATPLVIIKKPTGALRLCGDFKSTVNS
FT                 QSVIDCFPIPRPDDIYAKLAGGECFSKIDLAEAYLQLPLDSDSQQFMVLNT
FT                 PFGLYRYKRLPFGVASAPAIFQRFLQQLLDDIPCCANYLDDIIVTGSSRTD
FT                 HLNNLRLLFTKLHATGLKCNLQKSQFFQPEIEYLGHLVSRDGVRPRSELVT
FT                 AIDHLPRPTNLQELQSFLGKVSYYSKFLPNVAEVTHPLNALRKKGVPFVWS
FT                 AACEAAFARIKSMLKSSPCLGTFTPGRQLVLATDASQHGIGAVLAHRLDDG
FT                 SEQPIAYASKTLSDAQRNYSQIEKEALAIVYAVRKFHVFLYGIKFHLITDH
FT                 KPLVALFGPRSHLPDRTSQRLQRWALFLSAYHYEIHYRPSSHHANADALSR
FT                 LPMGPDPSFDKDEVAIFQIDERLHDAVERLPITANRVAQATRRDPVLREVL
FT                 KHVTAGWPERLSAKEAGPLRTYFQLRHRLSVIDGVLLLSTDSDEPRVVIPS
FT                 DLRARMLTLLHRGHWGITRMKVLARRFVYWPGIDAAIEQLVRTCTQCATQQ
FT                 AAPRRTFSPWPTPEHPWDRIHVDLAGPFCQSMWFVVVDALSNYPYVVRMRS
FT                 TTAEDVVRALVQIFAIEGLPRTLVSDNGPQFTSSYFQQFCTNNGISHLTSA
FT                 PFHPQSNGEAERMVRTFKSQLRKCLEKSSAEAALPLFLSTYRTTPINGRSP
FT                 AEVLHGRQPRTLLHLLCPEPRPEVPTHPRRYAPGTPVWARTFGRRPGWTPG
FT                 VVRRSRGRQMCVVDADGVTISRHLNQLRPRWGPTPPPSDLKSVPLGYPSVA
FT                 SEVERGIHPTSRWHRPPPADGCRTAASAAFSPPSHHHDDALPSEPTLDEAR
FT                 GSGATDGRPQRQQSAADDDVEMRPLSPRVDAPAGAPPSPPPPACSGPATDA
FT                 AVSSPAPAVGGAPAGEASSSSGDVEMRPASPPLSPVLAGTLPRPGRRRRGH
FT                 FRPYVPPDWLAAQRRADDIPSDADEAMEALAVSGRLPPRRGRPRRRVTWAT
FT                 PVAATIQRRRPSSASTCDVGFPEEGR"
XX
SQ   Sequence 4681 BP; 835 A; 1414 C; 1248 G; 1184 T; 0 other;
     gtataattgg cgacgagttt cgttcttacg cgtgttttct gtttgcggtg gttatggatc        60
     cggcgttgct tcagttactg caaaagcagc agcagcagtt agatcaacag cagcaacaac       120
     ttgttttgct tacggagttg attacgtctt ctcgtcccgc tgcggcccct tcgccgccgc       180
     cccaggccta cccccccgct cctccggctt ttccggcttt ccaagagtct aaggaagact       240
     gggactccta cgtgcggcgt ctacagcagc attttgcggc ttttaaggta acggatcctg       300
     acttacaaaa gtctttcttc ttgtcgtgga tcgagcccga tacttttcgt ttactgcgaa       360
     aactagctcc gctgtcagag cccgccgagt tgtctttttc ccgtatgtcg gaattgctta       420
     gttcttatta tcggcagcaa acgcacgtgg tgctttcccg actggatttt catcaaagca       480
     gaaagaaacc tggtcagtcg tatcagtcct gggtggcaga cctccgcggt ttgagtcgta       540
     agtgtggttt tgtgtgtgca aattgtcagc agtcgtatgc agattcctta attcgcgacg       600
     ttgttgtccg ttcggctcct gatagggctg tgcgtcgcga ggctttgcgg ttacaggatc       660
     ccacccttga cgaggttctg tctattgcac aagcttttga ggtgtctaag gcggcagcgg       720
     atcagtttga ggaaatggta gaggtggcgg cggtacagtc ctcgcgcccc cacaggcgtc       780
     gttcttcgcc ctcctcttcg tcgtcttcgt gttcttcacg attaccttcc gccgttccat       840
     tccgacgacg cgactttccc tcttgtccgg attgttttcg tgcgcacgat cgcccgcact       900
     gccccttccg ccgcgcgcgg tgcgcgtcct gccgtaaaca aggccacgtg gcggctgttt       960
     gtcggacttc tgcacgcggt cggccgccgt attctgacga gtcccaaatg gaagtaaact      1020
     gtctttctac cgcacctgga caggagcagg tcacttcttc aaagatttat gtcacacttc      1080
     ttattcaaaa tcggccgttc cgttttcaag ttgataccgg tgcctctgtc tctctcgtaa      1140
     atttggatac gtatttggca cttgggaagc cgcctcttgt taaaacttct cgtcgtttgg      1200
     tcggctatgg tgaacagccg attccagtgc tcggtcagtt tacgattgag gtggagtacc      1260
     agcacgtagt gcgcgccgtc acgtttttgg ccgtcacaag cgcggcttca gaaaacattt      1320
     ttggcctgga tgcgttcacg gcgtttggtt tcagcgttca cgacgctgtt catcttgtgt      1380
     ctgactccat accgtttaat gaattggatt cgctttgccg cgagtttgga gcacttttct      1440
     cggcgggttt gggaatggcc attggttacg aggcgcacat cactctcaaa cctacagcgg      1500
     ttccgaaatt ttgtcgcgcc cggcctattc cttttgcttt gcgcccagcg gttaaggacg      1560
     agttggatcg gttgcacggc ttgggtatca tcgaaccagt ttcctctagc ctgtgggcga      1620
     cacctctggt gataataaag aaacccacgg gagcccttcg gttgtgcggt gatttcaagt      1680
     ccacggttaa ctcgcagtca gtgatagatt gttttcccat tccccgcccg gacgacattt      1740
     atgcgaaatt ggcgggcggt gagtgttttt caaaaattga tttggcggaa gcgtatctcc      1800
     agcttccctt agattctgat tctcaacaat tcatggttct caacacccct ttcgggctgt      1860
     accgctacaa acgtctgccg tttggggtcg cgagtgcgcc cgcgatattt cagcggttct      1920
     tgcaacagtt gttggacgac attccgtgct gtgcgaacta tctggacgat atcatcgtca      1980
     ccggttcctc ccgcacagat cacttaaaca acctgcggct cttgttcacg aaattgcacg      2040
     cgacaggcct caagtgcaat cttcaaaaat cacagttctt tcaacctgaa attgagtatt      2100
     tgggacacct ggtgtcacga gatggcgtcc gccctaggtc agaattggtt acggcgattg      2160
     accatcttcc tcgccctacc aatttgcagg aactccagtc ctttttgggc aaggtcagct      2220
     actactccaa atttcttcct aacgtggcgg aggtcactca tcctttgaac gcacttcgaa      2280
     agaaaggtgt tccgtttgtg tggtctgctg cttgtgaggc ggcattcgca cgcatcaaat      2340
     caatgttaaa gtcttcacct tgcctcggca catttacacc aggccgacag ctagtcctag      2400
     ctacggatgc ttctcagcac gggattggag cggtgttggc ccacagactg gatgatggtt      2460
     ccgagcagcc cattgcctac gcgtctaaga cgttgtcaga tgcccaacgt aattattctc      2520
     agattgagaa agaggctttg gcgattgttt acgctgttcg gaagtttcat gtgttcctct      2580
     atggcattaa attccacctt atcacggatc acaaacccct ggtggcactg tttggtccgc      2640
     gttctcatct tccagaccgg acttcgcaac gtctccagcg ttgggctctg tttttgagtg      2700
     cctatcacta cgaaattcat tatcggccct cgtcgcacca tgccaatgcc gacgccttgt      2760
     cccgtctgcc catgggcccc gacccttcct tcgacaaaga cgaagtggcg atttttcaga      2820
     ttgacgaacg tttgcacgac gctgttgagc gacttccgat tacggccaat agagtcgcgc      2880
     aagccacccg tcgggaccct gtgctccggg aggtgcttaa gcatgtcacc gccgggtggc      2940
     ctgagcgatt gtccgccaaa gaggctggcc ctctgcgtac ctatttccag cttcgacacc      3000
     ggctgtcagt catcgacggt gtcctcctcc tcagtaccga ttccgacgag cctcgtgtcg      3060
     ttattccgtc cgacttacgg gctcgtatgt taactctgtt acatcggggt cactggggta      3120
     tcacacgcat gaaggtgctt gcacgccgtt ttgtctattg gccaggaatc gatgccgcca      3180
     ttgagcagtt ggttcgtacg tgcactcagt gtgctaccca gcaagctgcc ccccggcgca      3240
     ctttttcccc gtggcctact ccggagcacc cctgggaccg cattcatgtg gacttggccg      3300
     gccctttctg tcagtcaatg tggttcgtgg tggtagatgc actgtctaat tatccgtacg      3360
     tcgtgcgtat gcgctccact acggcagaag atgtggtcag agccctggta cagatctttg      3420
     ctattgaagg ccttcctcgg acgctcgtct ctgataatgg cccacaattc acgtcgtctt      3480
     attttcaaca attctgcact aataatggta tttcccacct cacctcggct cctttccacc      3540
     cccaatccaa tggggaggca gagcgtatgg tgcgaacttt taaatcacaa cttcgtaagt      3600
     gcctggaaaa gtcatccgcc gaggcggcgc tccccttatt tcttagtact tatcggacaa      3660
     caccaattaa tggtcggagc ccggcggagg tcctccacgg ccgccagccc cggacgctgt      3720
     tgcacctgct gtgcccggag ccccgacctg aggtgcccac acaccctcgg cgttacgcac      3780
     caggcacccc tgtctgggca cgcacctttg gccgccgccc agggtggacg ccaggggtag      3840
     tacggcgttc gcgtggtcga cagatgtgcg tggtagacgc agacggggtg acgatctccc      3900
     gccatctcaa ccaactacgt cctcggtggg gccccacccc accgccttca gatctcaagt      3960
     ctgtgcctct cggatacccc tccgtagctt cggaggtcga gagaggcatc catccgacat      4020
     cacggtggca ccggcctcct cccgccgacg gctgtcgcac ggcagcctct gctgcgttct      4080
     cgcccccttc ccaccaccac gacgacgcct taccgtcgga gccgacgctc gacgaggctc      4140
     ggggaagtgg cgctacggat gggcgtccac aacgccaaca gtcggccgct gatgatgacg      4200
     tcgagatgcg gcctctctcc ccgcgggtcg acgctccggc cggtgcccct ccgtcgcccc      4260
     cgcctcctgc ctgctcgggt cctgctacgg acgcagctgt gtcgtctccc gcaccggcgg      4320
     tggggggagc gccggcaggg gaggcgtctt cctccagtgg cgacgtcgag atgcgaccgg      4380
     cctctccgcc actgtcacct gtgctagcgg ggaccctgcc ccgacctggt cgccgccggc      4440
     gtgggcactt ccgcccctac gtgcccccgg actggttggc cgcgcagcga cgtgctgacg      4500
     acatcccctc ggacgcagat gaggcgatgg aggcgctcgc cgtctccggc cggctcccgc      4560
     cccgccgcgg tcgcccccgc cgcagggtca cgtgggcgac tcccgtggcc gccacgatcc      4620
     agcgtcgccg gccatcttcc gcctccacct gcgatgtcgg cttcccggaa gaggggaggg      4680
     a                                                                      4681
//
ID   Gypsy-15_LMi-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-280
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 280 BP; 51 A; 86 C; 79 G; 64 T; 0 other;
     tgttggagcg cgccactgca agccgcgtcc cgtccgtccg cggcatctga aagacgcgcc        60
     acggccgagt ccgccgcacg atggcgccgc ctctgagggc ctgcagcgcc gtcacgaccg       120
     ggcgagcacg cggtgtgcga ggcgtgcctc agtcatgttg tagctctcgc cggtctcata       180
     tgtaaacatt agctgtgtcc gtgacttgcc accacagtac cgttcatttg tgtatatgtt       240
     gtaccgtcca tgtgtgtcaa taaattatac tgttacaaca                             280
//
ID   Gypsy-15_MeUr-I repbase;    DNA;    INV; 4385 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4385
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3049-3049 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..3925
FT                 /product="Gypsy-15_MeUr-I_1p"
FT                 /note="Zinc knuckle, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSANFGLITSFNHNVQCWKTYKGRIKQFFIANDITDA
FT                 TDVTGTKRRAIFLSALAEDTYQLAADLCLPKELQDVPYEDILSQLDDHFTP
FT                 KRIGFGERHKFYAAVQHSSESHSQWAARLRGLTVHCGLSNVEEALRDRFIM
FT                 GMLPSAEKEKLYAQDLQGFTLSKAVEMAENVRCAREGAVASAAVGAPGAAP
FT                 TQLFKIAQSERKVKKSEVVKVKCSVCGYRNHKSSECRFAEYVCKLCNVKGH
FT                 LRRMCSKVKYVHEDISGSDHGGDDGESLFNIRSYNGEPMVETVVMNGIELQ
FT                 FEIDSGSAVTVISLVTYKKFFNSVPLSPPRKRLKGYVGEDIVCIGMIQVSV
FT                 SFSGRTCTLNAYVVRGGGPPLLGRDFISIFCLEFAPVKYCNENNLISQFKI
FT                 MYPDLFSNRLGLFNMYKAKLTLKDNSKPVFFKARPIAFALRDKVESELNRL
FT                 VGMGVLEPVEHSTYASPIVPVLKRNGSVRLCADYSVSINKYLVIEQYPLPT
FT                 ANELFAKLHGAQIFSKLDLSMAYNQVLLDDESKNLTCINTHRGLFRYTRLV
FT                 FGLASAPAIFQRAMETVLAGMDGVQCLLDDVLIAGKDTEEHMQRLQSVLLR
FT                 LQNAGFTLQQEKCEFLKSEVSYLGYIINKDGLKKSPEKIKAIVEAAVPSNV
FT                 NQLQSFLGLVNYYRNFVPNASTILSPLYELLKKGVKWNWGSVHGRAFETIK
FT                 NCLASDQVLALFDPKAKLILTVDASPYGLGAILSQIGTDGQERPISYASRT
FT                 LNAAEKRYSQIQKEATAIIFGVRRFHQYLYGRSIPFVLRTDHKPLISIFGP
FT                 YRGIPEVSANRLQRYALFLSGYNYNIEYVRSTDNSADFLSRATIATSATHT
FT                 QNEEACDRAAYVCFVVEGCLPVTLAELREETAKDITLNKVKNLVLTGWPKK
FT                 TNDLNVLPYHLCRFELAYENGCIMRGHKVVIPESLRKRVLSELHTSHLGIV
FT                 KTKSEARSRFWYPGVDGAIESMIRSCDVCGQLRGAPPRAPLAHWNHPPHPF
FT                 YRIHVDYLGPINGRMYFVVVDAYSKWVECYDMAQSTTSAATIEKLCDFISK
FT                 FGLPHTLVSDNGTAFSSKEFDDFCKLNGIHHLTSPAYHPSSNGQAECYVKV
FT                 IKKGINASLLAGRNMKDAKMRLLKYIFDYRNSIHSTTGFSPAQLVFGRKLR
FT                 SRLDLFDPKPQVSSPSSLVLANVVKNKQYLQNKKLNRRSRKCFKKNEIVLY
FT                 KKFNRNNKFAWYKGVIYKRIGKVLYIIKDLNTSELVKKHINHILRHKGNGF
FT                 KINNRDNDINCNDLPNSTTPPPVSSPPLSPPPPS"
XX
SQ   Sequence 4385 BP; 1272 A; 909 C; 1035 G; 1166 T; 3 other;
     ttggcgacga tttttaaacc cacccgcact acaaaaaaaa atgtcggcta actttggtct        60
     cataacgagt tttaatcaca atgtacaatg ttggaagacg tacaagggcc gaattaagca       120
     atttttcatt gctaacgata tcaccgatgc caccgatgtc acaggaacaa aaagacgagc       180
     tatattcttg agcgcgctcg ccgaagacac gtaccagctt gcagcagatt tatgcttgcc       240
     gaaggaactc caagacgttc cctacgaaga tattttatca caactggacg atcacttcac       300
     acccaaacgt atcggattcg gtgaaaggca taaattttac gcagccgttc aacactccag       360
     cgagtcccac tcgcaatggg ccgctcgtct ccgtggcctt accgtacatt gtggactgag       420
     taacgtcgag gaagctctgc gtgatcgctt cattatgggt atgctgccca gtgcagagaa       480
     agagaagttg tacgcgcaag atctacaggg cttcacgtta agtaaagccg tagaaatggc       540
     ggagaacgtg aggtgtgcaa gggaaggagc agtcgcatca gctgccgtgg gcgccccggg       600
     cgctgcgccc actcagctgt tcaagatagc acagagtgaa cgcaaagtga aaaaaagtga       660
     agtagttaaa gtgaagtgtt ctgtgtgtgg atatcgaaat cacaagtcgt ccgagtgtcg       720
     ttttgctgag tatgtttgta aattatgtaa cgtaaaaggc cacttacgta ggatgtgtag       780
     taaggtaaag tacgttcatg aagacattag cggaagcgat cacggtgggg atgacggtga       840
     gtctttattt aatatccgtt cttacaacgg ggaacccatg gtggaaactg tagtaatgaa       900
     tggaatagaa ttacagtttg aaattgacag tggttccgcg gtaaccgtga tatccttggt       960
     aacgtacaaa aagtttttca attccgtgcc actgtcaccg cctaggaaga gattaaaagg      1020
     ctatgtaggt gaagacattg tatgtattgg tatgattcag gtctcggtat cgttttccgg      1080
     tcgaacatgt actctaaatg cgtacgtagt gcgaggcgga ggtccgccac tgttaggcag      1140
     agattttatt agtatatttt gtttagaatt tgctcctgtt aagtactgta acgaaaataa      1200
     tttaatttct caatttaaaa ttatgtatcc cgatctattt tcaaataggt taggattgtt      1260
     taatatgtac aaggccaagt taacactcaa agacaattcg aaaccagttt tcttcaaagc      1320
     gcgtcctatt gcattcgctt tacgcgataa ggttgaatcc gaattaaata ggttagtagg      1380
     tatgggagtc ctcgagccgg tcgagcattc aacgtatgcg tcaccgatcg tacctgtgct      1440
     gaaacgtaac ggctcagtac ggctgtgcgc cgattactca gtgagtataa ataagtactt      1500
     agtaatcgaa caatatccct tgccgacggc taatgaatta tttgccaaat tacacggggc      1560
     gcagatattt tcaaagttag atttaagtat ggcttataat caagttttat tggatgatga      1620
     atcaaaaaac ttgacttgca taaatacaca ccgcggattg ttcaggtata cccggttagt      1680
     gtttggattg gcgagcgcgc cggcaatatt ccagcgcgcc atggaaaccg tgctagcagg      1740
     catggatggt gtgcaatgcc tcctggatga cgtacttata gcgggtaagg acaccgagga      1800
     acacatgcaa aggttacagt cagttcttct aagattacag aacgcgggat tcacgcttca      1860
     acaagagaaa tgcgaatttt tgaagtcgga agtaagttac ctaggttata taattaacaa      1920
     ggacggtctt aagaagtccc cagaaaagat aaaagcgata gtcgaggccg ccgtacctag      1980
     caatgtcaat caattgcaat cgtttttggg actcgttaat tattatcgga atttcgtgcc      2040
     gaatgcatct accatcctca gtccgctata cgagttgctt aagaaaggcg ttaaatggaa      2100
     ttggggtagt gttcacggaa gggcgtttga aacgattaaa aattgtttag catcagatca      2160
     agttttagcg ctgtttgacc ctaaagctaa attaatactc acggtggacg cgtccccgta      2220
     cgggttaggt gctattttgt cacagattgg taccgatgga caagagaggc ccatttcata      2280
     tgcgtcgcgt accctgaacg cagccgagaa acgttactcc cagattcaaa aggaagcaac      2340
     ggcaattata tttggagtac gtagattcca ccaatactta tacgggaggt caataccgtt      2400
     cgtgttacgg acggaccata aaccactcat atcgatattc ggtccgtacc ggggtattcc      2460
     agaagtctca gccaaccgat tgcaacgtta tgctttattt ttaagtggat acaattataa      2520
     tatcgaatat gtacgcagca ctgataatag cgctgatttt ttatcgcgcg caactattgc      2580
     taccagcgcg actcacacac aaaatgagga ggcatgtgat agagcagctt acgtttgttt      2640
     cgttgtagaa ggttgcttgc ctgtcacgct ggccgaattg cgtgaagaga cagccaagga      2700
     tattactctt aataaagtaa aaaatttagt cttaaccggc tggccgaaaa aaactaacga      2760
     tttaaatgtt ttaccttatc acttgtgtcg gttcgaatta gcttatgaaa acggttgcat      2820
     tatgagagga cataaagtgg ttataccaga gtcgttacgt aagcgagtgc tgtcggagtt      2880
     gcatacatct cacttgggta tcgtaaagac caagtcggaa gcgcgttctc ggttttggta      2940
     tcccggcgtc gatggtgcca tcgaatctat gataagatcg tgtgacgtgt gcggtcaact      3000
     gagaggggca ccgccgcgcg cacctcttgc gcactggaac catccgccgc accccttcta      3060
     ccgcatccac gtcgactact taggccccat taatggtcgg atgtatttcg tagtcgtgga      3120
     cgcgtactct aagtgggttg aatgttacga tatggctcaa tcgactactt cggctgcaac      3180
     aatcgaaaaa ttgtgtgatt tcatttcaaa gttcggttta cctcacacct tggtgagtga      3240
     taatggcacg gcgttttctt cgaaagagtt tgatgacttt tgtaaattaa acggtatcca      3300
     ccacttaact tcaccggctt accatccgtc gagcaacggg caagccgagt gctatgtaaa      3360
     ggttataaag aaaggtatca atgcgagttt attagcgggt cggaacatga aagacgcgaa      3420
     gatgcgttta ttgaaatata ttttcgatta taggaattcc attcattcca ctaccggatt      3480
     ttcacctgca cagttagtat ttgggcgtaa acttagatcg cggttggatt tattcgatcc      3540
     taaaccacag gtatcgtcac cgtcgtcgct cgttttagct aatgttgtaa aaaataaaca      3600
     gtatttacag aataagaaac taaatagaag aagtaggaag tgtttcaaga aaaacgaaat      3660
     tgttttgtat aaaaaattta atcgtaataa taaatttgca tggtacaaag gggtgatata      3720
     taagagaata ggtaaagtgt tatacataat aaaagattta aatacatcag aacttgttaa      3780
     gaaacatata aatcatatac taaggcataa agggaatggg ttcaaaatta ataacagaga      3840
     caatgatata aactgtaatg acttacccaa ctccaccaca ccgccgccgg tgtcgtcacc      3900
     gccactgtca ccgccgccac cgtcgtagtc acggccaccg tcgacctcac cgccaccggc      3960
     gatcaccgcc gccactgtcg tcgttaccac cgttgctcac gtcattacag gcctcatgtg      4020
     aggcaacgcc agcggtgtca ccgttgatgc cagccacttt gtcgcaacgg tttcggtctc      4080
     cttcaacatc tccctcggga caaccgactt caaggggaga ggaagaagat gatagtgata      4140
     cgtcaagggg ttcgtctact tcgcgctcga ctagaaagga tagcgactac atacccagag      4200
     ccagtgaagt cgcgctgcta tctgattctg agccggagat atttctcgat gccgatgatg      4260
     tacaggaaaa tagtacactt acgtcaccag ctccaaatag tacaaggaga gtgttgcgga      4320
     ctcggakawg ggtacactat ttttagtatt aacagctgct aaaggtcatt kttatggggg      4380
     agagt                                                                  4385
//
ID   Gypsy-15_MeUr-LTR repbase;    DNA;    INV; 109 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-109
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3030-3030 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 109 BP; 33 A; 19 C; 19 G; 38 T; 0 other;
     tgttatgtat atacattact catgcataat taatatctgt attaggtcta tgaacgacga        60
     ataaacagtg tgtctcgagc agccgtatgt tttactcgtg tacatacca                   109
//
ID   Gypsy-15_MoPha-I repbase;    DNA;    INV; 5172 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1095-1095 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..1204
FT                 /product="Gypsy-15_MoPha-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MSIHRSPVMTRSHASAAAEGDRTDVRNSEQETPGIVK
FT                 ALLEEMRLLRESLTQREEEQAATLRRHEEELRFLQLSLLNNIPQNGNAGSE
FT                 SRVSGAGADARREDAFGADADARREDARSEARMSVGLKLKPDTYDGTAPLR
FT                 EFLAQFSLIASANHWSESEKAVVLASCLRGRARSLLDSFPADEGSISFAEL
FT                 KSKLELRFGESELAQNFYMQFTNRKQGAGEDFATLGADLERLSRKAYPECS
FT                 YEVRDKISCSQFIAALSDGFVKRSLQVEGVTSLRVAVERAKMLKSFNLNSF
FT                 SEKGGRWNNNFRSERKGDGNSRSEQSGVSKRKEEDKGKKNYFKGKEGNGER
FT                 KGKECWQCGATGHFRAECPANKSGN"
FT   CDS           1195..4509
FT                 /product="Gypsy-15_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IGKLSSVGFIGAGSAGGVRAPVPARDGAALVRRLDGV
FT                 SAAARGRCYFTGYLNGRVCNFKIDTGSDVSVVSAKMAASFNQERIISCDLK
FT                 YPTGEKVPVISRITVEISLGKFCVNLLCYVAEISDECILGVDFLSEAGILD
FT                 GLFESALGLTGSEAEKRGQICSRIEECPARLSDPLLRIFEESSQELEFSQK
FT                 QMFSNFLSEFSCVFSEKIIAGNCNVLSHNIKLCDSRPIKQVPRRIPLHLQA
FT                 EVNKILEDMKAHKVIEESNSPWVSPAVMVKKKDGTIRFCVDFRKLNAVTIK
FT                 DSFPLPRIDNILDCLTGNSWFCTLDLKSGYWQVSLDPKDREKTAFSIGNGL
FT                 WQFTVMPFGLCNAPATFERLMERVLEGLISKKCFVYLDDVIVFGKNFKEMM
FT                 LNLKEVFIQLKRANLKVNPSKCSFLKREVKYLGHVISAEGVATDPEKISSV
FT                 KDWPLPKNRKQVRSFLGFCSYYRKFVKNFAVLAKPLYNLTEENVKFFWSSE
FT                 CQQAFENLKRVLTCPPVLSFPSGEGQFILDTDASNHGIGAVLSQLQGEEEK
FT                 VIAYYSRIFSKTERNYCVTRRELLAVVDSVKSFHHYLYGRKFLVRTDHVSL
FT                 RWLMSFRNLEGQLARWVERLQQYDFDIFYRSGKVHKNADGLSRRPCLETLC
FT                 RYCIKVELNEESSKEEILGRLIFSNKELQEWRSEQLQDSVVSMIIHAKEAE
FT                 TRPNWQEVASGEPSLKIYWSYWDSLFLIDGVLHKKWISPNLRRDIFQIVVP
FT                 RHKVQEILEEAHDSPSGGHFGVNKTLQKIRKHFYWATSKKDVERWCASCKV
FT                 CVARKGPIGKGKSPLEIYNVGAPFERIQVDILGPLPVSSSGNKYLLVVVDC
FT                 FTKWPEAIPLKNKRASTIARSLVDQVFSRHGIPLELHTDQGRNFECSLFKE
FT                 MSLLLGMKKTRTTPLHPQSDGQVERQHRTILDYLAKFISENQKDWDRWISL
FT                 YLLAFRSSKQEATGASPAEMYLGQDLRLPLDLLRGNPPSSKKEERIDFIFR
FT                 LRQRLDLMHRFARERLSISSKNAKFWYDQRTRQVNFEPGQKVWFFDPRRVP
FT                 GRAPKLQSSWNGPWKIVKKLNDVLYCIRRFHRNKVVHANRLAPFMERE"
XX
SQ   Sequence 5172 BP; 1342 A; 950 C; 1424 G; 1456 T; 0 other;
     ttttgggggc tcgtccgctt gtcggacctt gaggaacgcg cgcggatcta gtgataagtg        60
     cgcggagtga acagacgaga aggagcggag aattcgaagg atgtcaatcc accgttctcc       120
     tgtgatgacc cgatctcacg cttctgccgc tgcggaggga gacagaacgg atgttcgaaa       180
     ctcggagcag gagacgccgg ggatcgtaaa ggcgctccta gaggagatgc ggttgctgcg       240
     cgaaagcctg actcaaaggg aggaggaaca agccgcgacg ctgcgacggc acgaggagga       300
     gctgcgcttt ttacagctga gtcttttgaa taatattccg caaaacggaa acgcgggcag       360
     tgagtcgcgt gtgtccgggg cgggcgcgga cgcgcggcga gaggacgcgt tcggtgcgga       420
     cgcggacgcg cggcgggagg atgcgcgaag tgaagcgcga atgtccgtcg gtctaaaatt       480
     aaagcccgat acctacgacg ggacggctcc gttacgcgag ttcctcgctc aattttcgct       540
     tatcgcgagt gcgaatcatt ggagcgagtc tgagaaggcg gtagttcttg cttcctgtct       600
     gcgggggagg gcgcgttcac ttttggactc gtttccggct gacgagggct ccatttcgtt       660
     tgcggagctc aagtcaaagt tagaacttcg attcggggaa agtgagcttg cgcaaaattt       720
     ttatatgcag ttcacgaatc ggaagcaagg ggcgggggaa gatttcgcga cgttaggcgc       780
     ggatttggag cgcctatcgc gtaaagcgta tcccgagtgc tcgtacgaag tgcgcgataa       840
     aatttcttgt tcgcagttta tcgctgcgct gtcggacggg tttgtcaaac gctcccttca       900
     agttgaaggg gtaacgtctt tacgagtagc ggttgagcgc gcgaagatgt taaagtcttt       960
     taatttaaat agcttttcgg aaaaaggggg gagatggaat aataatttcc gttcggaacg      1020
     taagggagac ggaaattctc gatcggagca gtcgggagtt tcaaaacgga aagaggagga      1080
     caaaggaaaa aagaattatt ttaaaggaaa ggaaggaaac ggagagcgaa aagggaaaga      1140
     atgttggcaa tgtggggcca ccgggcactt tcgtgcggag tgtccggcaa ataaatcggg      1200
     aaactaagtt ctgtcgggtt tattggggcc ggctcggcag gcggagttcg ggctcctgtt      1260
     cccgcgcgcg acggggccgc tctggttcgg cgacttgacg gtgtgagtgc ggccgcgcgc      1320
     ggccgttgtt attttaccgg atatttaaat gggagagtat gcaattttaa aatcgatacg      1380
     ggctcggatg tatcggtcgt gagtgctaag atggctgctt cttttaacca ggagcgtatt      1440
     atttcttgtg atttgaaata tcctaccgga gaaaaagttc cggtaatttc tcgtattact      1500
     gttgaaattt ctttaggtaa attttgtgtt aatttattgt gttatgtcgc ggagataagc      1560
     gacgaatgta tactcggagt ggattttctc tctgaggcgg gaattcttga cggtctgttt      1620
     gaaagcgccc tcggtttaac gggcagcgag gcggagaagc gcgggcaaat ttgttctcgg      1680
     attgaggaat gccctgctcg gctctccgat cctcttttgc ggatttttga agaaagttct      1740
     caagaacttg aattttctca aaaacaaatg ttttcgaatt tcttgtctga attttcttgt      1800
     gtattttctg aaaagattat tgctggtaat tgtaatgttt tgtcgcataa cataaaattg      1860
     tgtgattctc gccctattaa gcaggtacct cgacgaattc cccttcattt acaggcggaa      1920
     gtgaataaaa ttttggaaga tatgaaagcc cataaagtaa tagaggaatc aaatagtcct      1980
     tgggtttctc cagcagttat ggtcaaaaag aaggacggta caataaggtt ttgtgtcgac      2040
     ttccggaaat taaatgctgt gaccataaaa gattcttttc cgcttccaag aattgataac      2100
     attttggatt gtttaacggg gaattcgtgg ttctgtacat tggatcttaa aagtggatat      2160
     tggcaggtaa gcctagaccc taaggatcgt gaaaagactg ctttttctat cggaaatggt      2220
     ttgtggcaat tcacagttat gccttttggt ctttgtaacg cccctgctac atttgaacgc      2280
     ttgatggaaa gagtattgga aggattaatt tcaaagaagt gctttgttta tcttgatgat      2340
     gtaattgttt tcggaaaaaa ttttaaagaa atgatgctca atttgaaaga agtttttatt      2400
     cagttgaaaa gagctaattt aaaagttaat cctagtaaat gtagtttcct taaaagagaa      2460
     gttaaatatt taggtcatgt tatttcagca gagggggttg caactgaccc tgaaaagatt      2520
     tcttcggtta aagattggcc tcttccgaaa aatcggaagc aggtacgaag ttttcttgga      2580
     ttttgctcgt attatagaaa atttgtaaaa aattttgctg ttttagcaaa gcctttgtat      2640
     aatttaacag aggaaaacgt taagttcttt tggtcctctg aatgccaaca ggcttttgag      2700
     aatttaaaac gtgtattaac atgtcctccg gttttgtctt ttccttcggg ggaaggacaa      2760
     tttattttag ataccgatgc ctcgaatcat ggcatcgggg ctgttctttc tcagttgcag      2820
     ggagaagagg aaaaagtcat cgcttactac agtcggattt tcagtaagac ggagcggaat      2880
     tattgcgtta cccgtcgtga acttcttgct gtcgtggatt cagtgaagtc tttccatcac      2940
     tatctttatg gacgaaagtt tttagtgagg accgaccatg tttctcttcg ttggctgatg      3000
     tcctttcgga atttggaagg acagctagca agatgggtag aacgccttca gcagtacgat      3060
     tttgatatct tttatcggag cggaaaggtg cacaaaaacg ccgatggact ctcgagacga      3120
     ccatgtttgg agactttatg tcgatactgc ataaaggtgg aattaaatga ggaatcttca      3180
     aaggaagaga ttttgggacg tttaatcttt tcaaataagg aacttcagga atggcgttca      3240
     gagcagcttc aggattctgt tgtttctatg ataattcatg ctaaggaggc tgagactcgc      3300
     cctaattggc aagaagttgc ttcaggcgaa ccttccttga agatttattg gtcttattgg      3360
     gattcattgt ttttgattga cggagttctt cataagaaat ggatttcccc gaacttgcgg      3420
     agagatattt ttcaaattgt ggtgccacgg cataaagttc aggaaattct tgaagaagcc      3480
     catgattcac cttcaggggg acatttcggt gtcaataaga cccttcagaa aatacgaaag      3540
     catttttatt gggctaccag caagaaggac gtggagagat ggtgtgcctc ttgtaaggta      3600
     tgcgttgcta gaaaagggcc cattgggaag ggaaagtctc ccttggaaat ttacaatgtg      3660
     ggcgcacctt tcgagaggat acaagtcgat attctgggtc ctctgccggt ttcttcttca      3720
     ggaaataagt atctcctagt ggtggtggat tgttttacta aatggccaga agctattccc      3780
     ttaaagaata aaagagctag taccattgca agatcacttg tggatcaagt attttctcga      3840
     cacggaattc ctttggagct tcacacggat cagggaagga attttgaatg tagtcttttc      3900
     aaggagatgt ctttgcttct aggaatgaag aagacgcgta cgactcctct tcatccacag      3960
     tctgatggac aagtcgagcg tcaacatcgc acaattcttg attatttggc gaaattcatt      4020
     tctgaaaacc agaaggattg ggatcgttgg atttcacttt atcttttggc ttttcgttcg      4080
     tcaaagcagg aagcaactgg agcttctcct gcggaaatgt atttgggaca agacttacgt      4140
     ttgcctctgg atcttcttag aggcaaccct ccttcttcca agaaagaaga gaggattgat      4200
     ttcattttca gattgaggca gagattagat ttgatgcatc gtttcgctcg agagcgtctt      4260
     tcaattagct ccaaaaatgc taagttttgg tatgaccaac ggactagaca agtaaatttc      4320
     gaaccagggc agaaagtatg gttcttcgat cctcgacggg ttcctggaag agctcctaag      4380
     ttgcagagtt cttggaacgg tccgtggaag atagtcaaga aattgaatga tgtattgtat      4440
     tgtattcgga gatttcatag aaataaagtc gttcatgcaa accgtttggc tcctttcatg      4500
     gagagggagt gaagccgatg cgagttcaaa ccgaaccgat acgaatccga gcccgaatac      4560
     gaaatggggg gtttattcta attttaacac cgttttgaag ttaattttag ttcatgtttt      4620
     tgtgtttttg ttctgtttgt tttcttgtgt gtttcagttg ctcttcggag agcagtttct      4680
     ttttagaaga agggcggacg aagagggatc tctttcggaa ggaggtcgct acttgtaggg      4740
     aagaagactg cctcatccac ggtttttgac cgtggttttc ccgtggaact tagggcaaat      4800
     gccgaggcag aggacgggga gctttttaaa gcgttgggtc cacggagata aattcccccc      4860
     ccccgatcct gaaaagagaa gaaagaagtg cacaagatcc gacgtcgagg gacagtgtcg      4920
     caaggggagt ggagcacggg gacgcggaag gattcgggag atcctgcgtg agagctggat      4980
     gagctcggcg tgagaggatg cccgtggtag tccttgcagg gggcgaagaa cttcggtgga      5040
     cgtggctcgg gaacccgttg cagcagctcg ggaagagcag gaaatcgtcc gggtaccgag      5100
     ggagtcttct gcggaaagcg ctaaaactgt ttccctgatt gtcgggacga caatctagaa      5160
     gaaggggggc ag                                                          5172
//
ID   Gypsy-15_MoPha-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1179-1179 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 224 BP; 47 A; 58 C; 60 G; 59 T; 0 other;
     tgttgcgtgc gtcgcccggt atactccgcg accgcgactc agctgttcga agacggatca        60
     atactattga tttcctggac cgagcgttgt cagctgacga gcgcttgacg acgcgtgtaa       120
     acaacgagtt gaatctcggt ctcgagcctt gtcggacgcg tgaataaagc tgcttggttt       180
     tacattataa aagtgtcttt catttccgcg gcgcgcacgc taca                        224
//
ID   Gypsy-15_MSe-I repbase;    DNA;    INV; 5296 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5296
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 892-892 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5296 BP; 1481 A; 1215 C; 1214 G; 1386 T; 0 other;
     aaactggctg cccaacgaaa gggccgaata agttttgtga ataagtgcta actaactgtt        60
     acgtgatcgt tccaaaatgc cacgtacggc acggaacaaa cgacgtcaaa ccgagtactt       120
     cgacttggaa caagaagaaa tggcgacgcc aaggtcaacg gagcggcgcc gcgtgtccgt       180
     gactgaaggt tcggcgtgca tcacggcgag cgatatcgcc tctatgatga catccttgca       240
     gcaagcgcaa gcggaacatt tcgaacgcct gcttgataaa gttctagatg cccgtcagcc       300
     atcttgttcg cccgcgtgtg tttcacccgc gccggccaca cctacgtcct ctgctcaacc       360
     tgcaccaggc aacttcgcaa cgtgtaaggc tcgttacagc ggagcgacat cggagtcact       420
     cgatggtttt attgatgcag tggaagcgtt taaagactgt gccaacgtta gcgacactaa       480
     cgctctacgt gggctatcaa tgctgcttac tcacgaagca gccacgtggt ggcaaggagt       540
     aaaacagacc atcaccactt gggatagcgc acttcaatgc ttgcgcagcg ctttcggaga       600
     tagccgaccg ccacatcgta tatacgtgga actcttctcc aacccacaag ggcttcaaga       660
     gaaaacagat atttttgtgg ctaaagcgcg cgcccattta gcacgtctac ccagcgggga       720
     cctcactgaa aaagtccagt tggatatgat ctacggactc cttaattata acatacgtaa       780
     acgacttcga agagaagagt tctctaattt taatgacttc cttcacaaag ctcgaagcat       840
     cgaggaagcc acagcggatt cacaaaaggc gcgcgccgac acttcaaaga atgccgccgc       900
     tgttacgcgc gccgacacct caaagggtgc cgccgttgtt acgcgcgccc gcgctatatc       960
     gccgacgcct gcgacgaccg cgacgatgcg gccgtcaacg caacgagctt cttacaaccg      1020
     tcagtcttcg acagcagagg gttcttcgcg tcatcatata ccaagcatcg actccaacgc      1080
     tactccgatg aggaaagcgt cgtattgtgt ttattgtaaa aactatggac atacacgtca      1140
     acagtgtcgt aaattattac aaagtgtaga tcgtgctcgt gatagtaata taaacaataa      1200
     gaataataat attatatcgt gttatggatg cggcgagagc ggagtgattc gtcctaattg      1260
     ttctaagtgt aattcaaatt ttagcgcgat tgattttatt ccgatgtcga gctcgaaacc      1320
     gcgaaaatat ccgacccctc ctgcaacggc tgctggtaag gcgtccgcgc acgtaagtaa      1380
     ttttgatacc tatcctatgg tttgtactgg ggttgtacct gactcatgtt ctcgtaattg      1440
     tagtgttaac tttgcaagtt caaactgtgc taatgtaaac acaggactca ccactacaga      1500
     acctagtctt attaatagtt cgtataataa cgaaagtaca ccccccgata gtaattttgt      1560
     ttgtaaacgt aatatgaatg ttccctataa acaagttaag cataaaagta ttatgaatgt      1620
     gccatctcgt cctgtaattc aggggggagt cttttaatcg cactcgtgta cctagtaaac      1680
     gtgagttatt gcttcctagg gaacctaact ataataagtg tatcgtaaat aatggtttgc      1740
     ataagtattg tgatttacct atattgcata gtagacatcg cgttatcaaa aatgttaggt      1800
     ttcaacagtg tccatcacaa agtagggtga ccataaattt tccgggacaa attccgaaaa      1860
     tgggctcacg aagtagggtg accatgaatt tttcgggaca aatttcgaaa accggtttac      1920
     tgaacagggt cactaagaat ttaccaggaa acaatctgaa aatgaataat ttaagtggtc      1980
     cggcttcgaa acgcaataat gagaggttcg ttaccttctc atcagttaat tctcgccatg      2040
     agggtacatt acggcgacct attttaggta tcgagatttt aggtattaaa ggaatgggct      2100
     taatcgatac cgcgtctaaa ggatctattg ccggaaccac actctacgcc ctactgaaac      2160
     agcataatca actcttcaaa ccaagcccaa tgcgtgttaa gctcgccgac ggttccgcgc      2220
     taacacgcca gatgctgtca acgacgcttg aagtcaagat tcaaggtagg agtgttcatg      2280
     tagaattttt tgtttttccc gatgcgatgg acaatgatac actgttaggt atagattttt      2340
     ttaacagcag ctggattgga aattaatttt gctacttcca catggcgctt tcatggttct      2400
     ggaaaagtat atccattaga atatgagtat tctaacagcc ttgcgtcttg ttctgctgct      2460
     gagttcctaa gagaagacga gggaaccatg cttaatcctc ccgaacgtga gaggctagct      2520
     tcacttttag gcgataatga agaagtcttt cggaccaggg ggagctccca ctccgtatgc      2580
     cgaacaccat atcgacactg gggatcatcc gcctatatca gtacctccat atcgcctcac      2640
     tcctgcaaag aagcagttga tgaaaatcga aattgataaa atgctggaag acggtataat      2700
     tgaggaatgc gagtctgcat ggacctctcc tgccgtatta gttcccaaaa aggacaatag      2760
     tatccgattt tgcgtagatt atcgcaagtt aaacgctctg acgaagacgg atagttatcc      2820
     gcttccgctc atagatgagc tgctgcagct tacgaagcgt cattgtttca tgtcctcaat      2880
     tgatttgaaa gcgggatatt ggcaggttca agttcgccca gctgatcgtg ataaaaccgc      2940
     gtttgtaact ccatttggga cataccgctt cacacgtatg ccttttggct taaagaatgc      3000
     gccctcgacc tttcaacgtt tgattgatcg ttttcgttct ggcgctagtt tgcagggcgt      3060
     tgttttgcta gcatatttag atgatctgct aatcatttca gaggattttt ctagccatct      3120
     agaagactta caaaaagtat ttgaccggtt gcgtctattc ggccttcgtg caaatcgtgc      3180
     aaaatgtttc tttgcacgac caacgatcaa ttacctggga catgtgataa ctcctgaagg      3240
     catcaagccg gatcctgcaa agatcgacgc agtcctgcag atggccagtc ctaagaactt      3300
     aaaacattta aaatcatttt tacaaacatg ctcctggttc aggaagttcg ttccgaattt      3360
     ttcccaagta agtcaaccct taaccaagct tactcgtaag aacgaaccgt ggatatggga      3420
     acatccccaa gaggaagcat tccagtccct gaagaacatg ttaacttccg cgcctatatt      3480
     agttcaggct gattatacta aggcctttgt attacgcaca gacgccagca actacgcttt      3540
     aggagctgtt ttgcttcagg gcgaagggcc cgaagaacgg cctattgagt atgccagccg      3600
     tctgttgacg tcagcggaaa gaaattatag cacgaccgag aaggaagctt tagcagttgt      3660
     ttgggccaca gataaatttc ggggttatct ggatggacat ccagtcgtgg tcaaaagtga      3720
     tcaccagccg ctaaaatggc ttttaaccct caaaacgcca agcgggcgtc tcattagatg      3780
     ggctatgaag cttcaagcct ttgatattcg tttcgaatat actcccggaa aagctaacgt      3840
     tgtggctgac gccttaagcc gtcctcagtg cgacgacacc aaccaagaag gttgtgatgt      3900
     ctgcagtgtt aacgttgatt taccacgggc aagcgccgct gaactccgta aggagcagct      3960
     agaaagatcc cgaggttgcc aaaattatta acagtcttga agactccggg ccagtcaacg      4020
     ttcaatggct agatagaggt tacatcatga accaaggagt tctctaccgt tatcttccag      4080
     attcagatag tgaacagcca cagctcgtcg tgccagttac tatgcgtgaa aagatcctaa      4140
     aggaatttca cgatgccccc acagccggac accaaggtgt agaacggact tttaatcgca      4200
     tcagccgaaa ttattatttt gtggggatgc gtaagtatat tacggattat ctaaagaatt      4260
     gtgaagagtg tcagcgatac aaggcatcga atcagaagcc cgctggactc ctacagacac      4320
     cagtccttca tcagcgcgga gaagtactcg ccatcgatct ttttgggcct ttgccagacg      4380
     gcgaacatgg tgagaaatgg gtattattag tcgaagatac ggccaccagg tgggtcgaat      4440
     tatttgcctt gaaagaagcg actgcagaga tatgtgcatc cgtgcttatt agtgaatatt      4500
     ttcttagata tggattcccg cgccgagtca tatcagacaa tggtgtccaa tttatctcag      4560
     ccaccatgca acaatgcatg ttcatacttg gcatcaaaca aaatcttatt cctttatatc      4620
     accctgaggc aaatcctgca gagagaaaga atcgggattt acggacacag ctctcgatcc      4680
     tagtgagaaa tgagcaccgc cgatggccag aatttttgcc ttcaatacga tttgctatga      4740
     atagtgccct gtgttccacc ctaggatcca gtcccgcgca cgttatgttc gccagagaaa      4800
     tgagaacccc atttgatgcg cagtgtgatt taagagccat attagataaa gagaatttcc      4860
     tccctcagat caccccatac cttcgtaggt tcatagataa ctgggatgtt attagagata      4920
     gggctgagtt tcgtcaagat gataggaaaa agtatgctga taagacgcga cagactacac      4980
     agtaccatgt aggtgattta gtacttgtat ctactcatct actcagtgat gcatccaaag      5040
     gtaggaccag aaaatttatg cccaaacgtg atggacctta tcgaataagt aaagttgtta      5100
     gtcctactac ttacgaagtc agtgacttag atgcccaaat tttaggaaag tttcatgctt      5160
     ctgatttgaa gccgtataat agtgagtctg gtcaggtctc agccccagta cagcctcggc      5220
     gccctcgcgg acggccacgt catgttgttg ttgccgagtc accaacgggt cgttgtagtg      5280
     actcggaggg ggagga                                                      5296
//
ID   Gypsy-15_MSe-LTR repbase;    DNA;    INV; 333 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-333
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 941-941 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 333 BP; 80 A; 89 C; 75 G; 89 T; 0 other;
     tataacgtgt ccgaatttta aaacgcgccg agcgagtagc gcgcatgcgc ggagcgtttt        60
     aacaacggcc tcgcgttacc gctcggccaa tggacagcca cgtagcggct cggggacgcg       120
     tcgccagtcc gttgtcggcc ctcgccacac gcgtacacgc atcacccgag ctccgtcgcg       180
     ataccgtctt tagtccctaa atgtatttgc gtttatattg tgtagttgtg tatattattg       240
     attatgtgtc aaataataat aaattcttag tcgtcaatca cacgcgcttt tacaattcaa       300
     ttcgccccga acccacaaag taaagttgtt ata                                    333
//
ID   Gypsy-15_OrIn-I repbase;    DNA;    INV; 4812 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4812
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1556-1556 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           233..4243
FT                 /product="Gypsy-15_OrIn-I_1p"
FT                 /note="SAP, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDDRRLEAMTARELREELEHRGLPSQGKKDVLVKLLK
FT                 DAILEDRRTDFRSKDKKNTRAVEDGRGGSSNFSVTLRDVEAAVPRFSGKGP
FT                 LKVEQWLEDFHEIADTYKWDEWQRLVMAKRSMSGSALKFVEYERVRSFDEL
FT                 CRKLLEEFSEPECQAHIHEQLRQRRKSANETMYDYFLDLRGISQNKIDEKS
FT                 LVFYAINGVPNNDQRKYFLYGAEGITDLKKRIKTFDAVAMPSLPPSASHSV
FT                 SSTTVTSPTSTTEQVTKCFNCGRRGHLSTSCALPKREKGACYRCGSTAHQI
FT                 SSCPEVKKAYQTESSANTGSTSVNFFSIPDYTCDLIMNFPGKVSVGVKGIF
FT                 DTGCPFNLLKVNMIPLGVELDNVSPFVRLQGVKGTPVDIQGTLRLGFEIQG
FT                 FLLSAIFYVVPENTMSYGVILGREFISNGGVKVDFGKEARVQSLVTEDPAD
FT                 EILHINVVEKDSCPELKMNEDVSFINRTRLIQLFADEYFKAEHRGRPVTNL
FT                 EMVIKLVNPDNASFFYNPRRLSYEEKSVVSTIITDLLERDIIRPSTSPYAS
FT                 PIVLVKKSSGKWRMAVDYRTLNKLTVKEHFPIPRIDDHLDALRGKKVFSKL
FT                 DLKDAFHHVDIAEESIKYTAFTTFMGQFEYRKMPFGLSNGPSVFMRFITAA
FT                 FRDLIFSGKILVYHDDILIPTVTDEENLLVLRDVLKICVRNCLELNFGKCE
FT                 FLSRKIDYLGYTVDEGGISPTLEHVKTVSGYPVPRNVKEVSAFLGFTSYFR
FT                 KFIPDYAVLAKPLSDITRREGSFSLGIAELASFEKLKAALSSKPVLALYCH
FT                 GSDTELHCDASSDGFGAVLLQRQEDKKFHPVSFFSRKTSDAESRYHSFELE
FT                 AAAIVYALERFRIYLQGIHFTIVTDCNSLKLTLEKRHVNPRIQRWALILSN
FT                 YDYDLEHRKGVRMMHVDALSRIHRVLIVEDNSFERNLSLVQGRDPIISALR
FT                 AQLETAESKCFEMRNGLVYKKIDKKSSLFYVPESMESQVIRACHDDLGHCG
FT                 IDKTYEYLTRIYWFPKVKEKISTYISQCLKCIAFSPCPNKTEGELHAIPKG
FT                 REPFQVVHVDHYGPLSSTKNKRKYIFEVVDGFTKFVKFYATKTTNSNEVIE
FT                 HLSSYFEMYSRPKKFLVSDRGSAFTSGEFSKFMEDCGIRHVKIATATPQAN
FT                 GQIERINRVLTPMLAKLSPQMERWDQVLREVEFAINNSVSRSTGETPAVLL
FT                 FGVPQHQNESDLVRLFLESVREVEREDMKIIRLAAEKRMEKVSAYNKERFD
FT                 RVHACPKVYDVGDYVVIKNFDSSQSNRKLLPKFKGPYVVSRVLGNDRYVVT
FT                 DIDGFQATQIPYTGVASVGNMRRWV"
XX
SQ   Sequence 4812 BP; 1314 A; 787 C; 1197 G; 1514 T; 0 other;
     atttcagaag tgggatcgac agtgtttacg ccccacataa tttacgtaag ttttaagttt        60
     ctgtttacgt tttgtgccgg tgtgatcgtt atctcgtgga cctttttttg gaattttaaa       120
     gaaacaattt gtttaatttt tagttcgttt taattcgttt aataaacgac atttcgttta       180
     tttcattttc gacattctcg ggtatttttt ttttcttccg ttacgcgtca ttatggacga       240
     caggagattg gaagcgatga ctgcgcggga gctccgcgag gagttggaac acaggggttt       300
     gccatcgcag ggtaaaaagg acgttctcgt gaaattatta aaagatgcta ttttggaaga       360
     tcgtcgaacg gactttcgat cgaaagacaa aaaaaacact cgggcggtgg aagacggccg       420
     cggaggtagc agtaattttt cagtaacgtt aagggatgtc gaggcggcgg ttccgcggtt       480
     ttccggcaag gggccgttaa aagtggagca gtggctggag gattttcacg aaattgcaga       540
     tacatataag tgggacgagt ggcagcgcct cgtcatggcc aaacgaagta tgtcggggtc       600
     ggcgctgaaa tttgtagaat atgaacgagt acgatcgttc gacgaactgt gcaggaaatt       660
     gttggaggag ttttcggagc ctgaatgtca ggctcacatc catgaacagt tgcgccaaag       720
     gaggaagtca gcaaatgaga caatgtacga ttattttctg gacttaagag ggataagtca       780
     aaataaaatt gacgaaaaat cgttggtatt ttacgccatc aatggtgtac cgaataacga       840
     ccaacggaag tattttctgt atggggcaga aggaataacg gacttgaaaa aacggattaa       900
     aacgttcgac gcggtggcaa tgccttcgct gcctccttcg gcatcgcatt cggtctcatc       960
     gactacggtc acgtcgccta cgtcgactac ggagcaggtg actaaatgtt ttaattgtgg      1020
     cagaagaggg cacctctcga cctcttgcgc tctaccaaag agggaaaaag gagcgtgcta      1080
     caggtgcggg tcgacggccc accaaatttc atcgtgcccg gaagtgaaga aagcgtatca      1140
     gaccgagtct tcagcgaata caggtagcac atcagttaat tttttctcaa ttcctgatta      1200
     cacgtgtgac ctgatcatga atttcccggg caaagtgtcg gttggggtta aggggatttt      1260
     cgataccggt tgcccattta atttattaaa ggtcaatatg attccccttg gggtcgagtt      1320
     agataatgtt tctccttttg tacgattaca aggtgtcaag ggaactcctg tagatattca      1380
     ggggactttg agactcgggt ttgaaatcca gggtttcttg ttgtctgcga tattttatgt      1440
     ggtgcctgaa aacacgatgt cttatggggt tattttaggg agagagttta tttcgaacgg      1500
     gggtgttaag gttgattttg gtaaggaagc tagagtccag agtttggtga cagaggatcc      1560
     tgctgatgaa atattacata ttaatgtggt tgagaaggac tcatgtcctg agttaaaaat      1620
     gaatgaagat gtatctttta ttaacaggac tcggttgatt caattgtttg cggatgaata      1680
     ctttaaggct gagcatcgtg gcaggccggt gaccaacttg gaaatggtca tcaagctggt      1740
     gaatcctgat aatgctagtt tcttctataa tccacgaagg ttgtcgtatg aggaaaagtc      1800
     ggtggtatcg acaattatca cggatttgct tgagagggac ataattaggc ctagtacgtc      1860
     gccttacgct agtccgattg tcttggttaa gaaaagttcg ggaaagtgga gaatggcggt      1920
     agactatcgt acgttaaaca agttgactgt taaggagcat tttcctattc ccagaattga      1980
     tgaccattta gatgcgttga ggggtaaaaa ggttttctct aaattggatc ttaaagatgc      2040
     ttttcatcac gttgacattg cggaggagtc aatcaaatac acggcgttta ccacatttat      2100
     gggacaattt gagtacagga aaatgccttt tggcttatct aatggtcctt cggtttttat      2160
     gcgattcatc acggcggctt ttcgggatct catttttagt ggtaagatat tagtttatca      2220
     tgatgatatt ttgataccta ctgttacgga tgaggagaat ttattggttt tacgagatgt      2280
     tcttaaaatt tgtgtcagaa attgtcttga acttaatttt gggaaatgtg aatttttaag      2340
     ccgaaaaatt gattatctgg gctatacggt tgatgagggt ggtattagtc ctacccttga      2400
     acatgttaag acagtgagtg gttaccctgt cccgaggaat gtgaaggaag tctcggcatt      2460
     tttgggcttt acttcatatt ttagaaaatt tatccctgat tatgcggtgc ttgccaaacc      2520
     tttgtcggac atcacccgca gggagggcag tttttctctt ggtatcgctg agctcgctag      2580
     ttttgaaaaa ttgaaggcag ctttgtcatc gaaacccgtt ttagctcttt attgtcatgg      2640
     ttcagatacg gagttgcatt gtgatgcctc ttctgatggg ttcggagccg tgttgttgca      2700
     gcgtcaggag gataagaagt ttcatccggt tagttttttc agtaggaaaa cttcagacgc      2760
     agaatctcgt taccactcct ttgagttgga ggcggctgca atagtttacg ctttagaacg      2820
     ttttcggatt tatttgcagg ggattcattt tacgattgtc acagactgta atagcctgaa      2880
     gctaacgtta gagaaaagac atgtcaatcc gcgaattcag cggtgggcct taattctgag      2940
     taattacgat tatgacttgg aacaccgaaa aggcgttcgg atgatgcatg tagatgcctt      3000
     gagtcggatt catagagttt tgattgtgga ggataacagt ttcgaacgga atctatcact      3060
     ggttcagggc cgcgatccga tcatttctgc tcttcgggcc cagttggaga cggccgaaag      3120
     taaatgtttt gagatgagga acggtttagt ttataagaaa attgacaaga agtcatctct      3180
     cttttatgtt cctgagtcta tggagagtca ggttatccgc gcttgtcacg atgacttggg      3240
     gcattgcggc attgataaga catatgagta tttgacccga atttattggt ttccgaaagt      3300
     aaaggagaaa atatcgacct acatttccca gtgtctgaag tgcatcgctt tttccccttg      3360
     tcctaataaa actgagggtg agctccacgc cattcccaag ggtagggaac cctttcaggt      3420
     ggtccatgtt gaccattatg gaccgttatc gtccacaaag aacaagcgga aatatatctt      3480
     tgaagtcgtt gacgggttta ctaagtttgt gaagttttat gccactaaaa ccaccaactc      3540
     gaatgaagta atcgaacatt tatcatcata ctttgaaatg tatagcaggc caaagaagtt      3600
     cttagtatcg gataggggat ctgcattcac ttctggtgaa ttttcgaagt tcatggagga      3660
     ctgcgggatt cgacatgtga aaattgcgac agcaactcca caggcgaatg gccaaataga      3720
     aaggataaat agggtgctca caccgatgct ggcaaaatta tccccccaga tggaaagatg      3780
     ggatcaggta ctaagggagg tcgagtttgc gattaacaac tcggtgtcta ggtccactgg      3840
     agaaacccct gctgtcctat tattcggcgt gcctcaacat caaaacgaaa gtgatctggt      3900
     caggttgttt ttagagtcgg ttagggaggt tgaaagagag gacatgaaaa taattcgctt      3960
     agcggctgag aaacggatgg aaaaggtgtc tgcttataat aaggaacgtt ttgacagagt      4020
     tcacgcgtgt ccaaaggtgt atgacgtcgg ggattacgtt gtaataaaga actttgattc      4080
     gtcccaatcg aataggaagc tgttacccaa atttaagggg ccttatgtag tgtctcgggt      4140
     attagggaac gatcggtatg tggtaaccga catcgatggt tttcaggcaa cccaaattcc      4200
     gtacactggt gtagcgtcag tgggcaacat gagacgttgg gtttgaaggg attttatgtg      4260
     aataaggtaa acactattgt attttagtta gtatgtttat gttttaggcg atcctagtgg      4320
     aatgtgaatg agtggttcga tttaagtaca tgtacatcat attttatttt atcgtccgtt      4380
     gatgagtcta aattgtgttt ttttctttta ttttaatggt ccttttaacc atgggtgttg      4440
     gtaactttta actatagtag atactttatt tttttttgag tcgacgtttg attgtttgat      4500
     ttgtcacatg gaaacaaagt gtgtaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4560
     aaaaaaaaaa gtatctaatt tgtaattgat ttaatttaat ttaatttgta atttgtaatt      4620
     ttaaaattgt aatttttttg ccttttaatt tgtaatttga tttgtattcc ggttttgttg      4680
     tattttagtt tgtatttcaa ttttttttgt aatttaattt gtattaattg aattttggtg      4740
     atgttaaatt ttgaatttta tactgtgttg ttttatttga tcgggagatc aaattggtca      4800
     gaatggccga gt                                                          4812
//
ID   Gypsy-15_OrIn-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-158
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1522-1522 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 158 BP; 53 A; 14 C; 38 G; 53 T; 0 other;
     tgtagtaata atgttggtag gactgaggag gaaggttagg aaaggtaatc gaagtttgtt        60
     atcagaagga atgttcgaat gagaaagact tgtaaacgtt ttaaaataaa taattaatcg       120
     tccggtcgtt tcaatattgt gttttatatc cgtctata                               158
//
ID   Gypsy-15_PBa-I repbase;    DNA;    INV; 5208 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5208
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 699-699 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           232..1263
FT                 /product="Gypsy-15_PBa-I_1p"
FT                 /translation="MAPEQGPEDSKTAETGNKSEMADDGIDRLTKAELQER
FT                 LGQIQQNTAGPVEALRQRLRRCTRDHPGTSLEPPALTPLASPVYSVPPEFP
FT                 IRIPELPRPAEIMGQMRKWGCFFDGRDPIGFLERIEELGETCGFTEQQLLT
FT                 GIPALLRGDAMLWHRNNRQYWPAWETFRQDFVAQFCPQPEKTAALREIYSR
FT                 TQKPGETYAQYATALQTLMRRAGNFGERAQTDLLFANLHPDYKIYIRREDA
FT                 ANPRVLQARATEYEGIQKQRQTLRATEHRGEVTAKASRTAATAYNPRDHCW
FT                 RCRQRGHTRFECRRPPVRFCSQCGKEGVFTRDCHPPGNASRIENIAAASRS
FT                 Q"
FT   CDS           1110..4469
FT                 /product="Gypsy-15_PBa-I_2p"
FT                 /translation="MPTTRAYTLRMPATTRSILLSMRKRGGIHPRLPPAGK
FT                 RQQDREYRGRVSIPVSYTPRPHLTVHVRDQPIEAMIDTGSELSFIDQKTAR
FT                 SLEQLRFMPTAEHGQVRLADGTQVSTTGTIRVPLNLSHRVTWHTFRILPQL
FT                 DNAMIIGMDVWAGSGIILRPPPPYSHTYETTPTKQSCPISEDEQLRVFLEE
FT                 EVGKFDHVRGPTELTEHRIKLIDPAPIKQRYRPRNPAMQAIIDAEVDQMLQ
FT                 DGIIEPSTSAWSSPIVVVRKKDGKNRFCIDFRKVNSVTERDAYPLPQISAT
FT                 LDKLRGARYLSTIDLKNGYWQVSLAPSSRPITAFTVPGRGLMHFRVMPFGL
FT                 HSAPATFQRLLDRVIGPELEPHAFAYLDDIIVASRTFAEHLQHLREVFRRL
FT                 RAARLRINRDKCRFCVPELRYLGHIVNRDGIKTDPEKTTAIADWPTPQTVK
FT                 HIRQFLGVASWYRRFIQNFATVAAPLTALTRKNTRWKWGEEEQGAFDALKN
FT                 NLTTAPVLACPDFERPFTLQTDASTIGLGVVLTQYFPEGERVIAYASRTLN
FT                 GAEKNYSATELECLAVVWGIRKMRGYLEGYRFTVITDHQALKWLQQLESPS
FT                 GRLGRWMFELQQYAFEIRYRKGALNRVADALSRQPAVSAISHPRCQWYRRT
FT                 WDRVTRDPDRFPDFTIRDGRLYRHVLHTLDFHDVPRETQWKECVPTGKRRD
FT                 ILRRFHDAPTAGHLGVAKTITRIAYHYYWPGMYRDIARYVRSCENCLAYKV
FT                 PTRHPPGTMHATALDRPWQQMTLDLIGPLPRSLRGHTWVLNMQDRFTKWLE
FT                 IRPLRRATAESVARTIAEAIIFRHGCPTEILSDNGTQFKAKEVERLLSAFG
FT                 IKHRFTPAYAPHCNPTERVNRTVKTMIAQYVGRNQKTWDETLPELQFAFNT
FT                 ASNDATGYSPAYLNLGREPCSVVRTNEATVGPSKPDALRQRLEDAYELVRV
FT                 NLARAFQQQARNYDLRRRDWRPKLGEWVWRRDHPLSRKRDAFNAKLAPRYI
FT                 GPLEVKAAISPVIYDLRSKRGKWHRHVHLQDLKPSPGKTEADSAAETANDD
FT                 ADNEPTDADNQPTDADATPTVTTTDEPPAIAPKRRGKPRDVNKKTQQRGPG
FT                 RPRKNSSQSINK"
XX
SQ   Sequence 5208 BP; 1295 A; 1675 C; 1394 G; 838 T; 6 other;
     tatattcacg cgctatccgc gcgccgatcg ccgtctcgcc cgtccacggc cacgaacatt        60
     aacgcgaaga ttcggtgcat tccatcgcac cactattagt caaataaaca tcgttatttg       120
     ttataattmt cgcctaacaa tttaataagc gamtttctgt ctccaacgtc ctcgcttcct       180
     cctcctggta accgactgac cgctctccgc gcgggaaagc gagaccgttt tatggcgccc       240
     gaacagggac cggaagatag taagaccgcg gagacaggaa acaagagcga aatggccgat       300
     gacgggatag accggttaac gaaggccgag ctgcaggaac ggctcggaca aatccagcaa       360
     aataccgccg ggcccgtcga agcgctacga cagcgcctgc gcagatgcac gcgcgaccac       420
     ccgggaacgt ctctcgagcc acccgcgctg acaccccttg cttcacccgt atattccgtg       480
     ccccccgaat ttccgatccg tatacctgag ttgccacggc cggccgaaat catggggcag       540
     atgcgtaagt ggggctgttt cttcgacgga cgcgatccga tcgggtttct ggagcggatc       600
     gaggaacttg gcgaaacgtg cggttttacc gaacaacaac tgttgaccgg tatacccgca       660
     ttgttacggg gggacgcgat gttatggcac cggaacaatc gccaatactg gcccgcgtgg       720
     gaaacgttcc ggcaagattt cgtcgcacaa ttttgcccgc aaccggaaaa aaccgccgca       780
     ctgcgtgaaa tctactcccg cacccagaag cccggtgaaa cgtacgcaca gtacgccaca       840
     gccctacaaa cgctcatgcg tcgcgcaggg aatttcggag agcgggcgca gaccgatctg       900
     cttttcgcca atctccaccc ggattataaa atctacatcc gtcgggagga tgccgcgaac       960
     ccccgcgtcc tgcaggcacg agcgaccgaa tacgagggga tccaaaaaca gcgacaaacg      1020
     ctacgagcta ccgaacatcg gggggaagtc accgcgaaag ctagccgcac ggccgcaacc      1080
     gcatataacc cccgcgatca ctgttggcga tgccgacaac gcgggcatac acgcttcgaa      1140
     tgccggcgac cacccgttcg attctgctct caatgcggaa aagagggggt attcacccgc      1200
     gattgccacc cgccgggaaa cgccagcagg atcgagaata tcgcggccgc gtctcgatcc      1260
     cagtaagcta cactccgcgg ccgcacctga ccgtacacgt gcgcgatcaa ccgatcgagg      1320
     cgatgatcga caccggatca gagctatcgt ttatcgacca aaagaccgcg cgttctctag      1380
     aacaactccg cttcatgccg accgccgaac acggtcaggt gcgactcgcg gacgggacgc      1440
     aggtcagcac cacaggcact attcgcgtac cgctaaatct atcccatcgc gtcacatggc      1500
     acaccttccg catcctgccg caactcgaca acgccatgat tatcgggatg gacgtatggg      1560
     ctggatcggg aattatcttg cgaccaccgc cgccgtactc acatacgtac gaaacaacgc      1620
     cgaccaagca gagttgtccg atctccgagg atgaacaact ccgagtgttc ctcgaggagg      1680
     aagtagggaa atttgaccac gtccgtggac cgaccgaatt aaccgaacac cgcattaagc      1740
     tcatcgatcc cgcgccgatt aaacaaagat accgaccgcg gaatccggca atgcaggcga      1800
     tcattgacgc ggaggtcgat caaatgctgc aggacggcat aattgaaccg tcaacaagcg      1860
     cgtggagctc tccgatcgtc gtggtccgaa aaaaagacgg aaaaaaccga ttctgcatcg      1920
     attttcgcaa ggtaaattcc gttaccgagc gtgacgccta tccgttgcca caaatttccg      1980
     ccacgctgga caaactgcgc ggagcgaggt acctgtctac catcgacctg aagaacggtt      2040
     attggcaggt atccctcgct cccagcagca gaccgatcac cgcatttacc gtaccaggtc      2100
     gagggctaat gcactttcgg gtcatgcctt tcggcctgca ttcagccccg gcaacgttcc      2160
     agcgattgct cgaccgcgta atcgggcccg aattagagcc ccacgcgttc gcctatctgg      2220
     acgacatcat cgttgccagc cggacatttg ccgaacacct gcagcatctg cgcgaagtct      2280
     tccgccgact gcgcgcagcc cgactccgca taaatcgcga taagtgccga ttctgcgtac      2340
     cggagttacg atatctcgga catatcgtga atcgcgacgg aataaaaacc gaccccgaga      2400
     aaactaccgc gatcgccgac tggcccactc cgcagaccgt gaaacacatc cgacagtttc      2460
     tcggggtggc ctcctggtac cgacggttca tccagaattt tgccaccgtc gccgcaccac      2520
     taaccgcgct gacgcggaaa aacacgcgat ggaaatgggg ggaggaggaa caaggcgcct      2580
     ttgacgcgct gaaaaataat ttaacgaccg ccccagtgct ggcctgcccc gatttcgaac      2640
     ggccgtttac cctgcaaacc gatgcaagta ccatcggcct cggggttgta ctcacgcagt      2700
     attttccgga gggggaacgc gtcatcgcat acgcgagtcg gacgctgaac ggcgccgaaa      2760
     aaaattacag cgcgaccgaa ctagagtgcc tcgccgtcgt ctggggaatt cggaaaatgc      2820
     gcgggtatct kgaaggctac cgcttcacgg taatcaccga ccatcaagcg ttgaaatggt      2880
     tgcagcaact cgaatcaccg tccggccggc tgggacggtg gatgttcgag ctgcaacaat      2940
     acgcgttcga aatacgatac cggaagggcg cgttgaaccg ggtsgccgac gcgttatctc      3000
     ggcaacccgc cgtctccgcc atatcacatc cccgctgcca atggtaccgc cgcacgtggg      3060
     accgagtgac gcgcgatccc gaccgttttc cggatttcac gatccgcgac ggacgattat      3120
     accgccatgt actccacaca ttagacttcc acgacgtgcc ccgcgaaacg cagtggaagg      3180
     agtgcgtgcc gaccggaaaa cggcgggaca ttttacgccg attccatgac gccccgaccg      3240
     ccggacatct aggagtggcc aagactatca ctcgcatcgc gtaccactac tattggccgg      3300
     ggatgtaccg cgatatcgcg cggtacgtgc gatcctgcga gaactgcctc gcgtacaaag      3360
     taccgacccg acacccgccc ggaaccatgc atgcaaccgc actcgaccgt ccgtggcaac      3420
     agatgacgct cgacttaatc gggcctctac cgcgctccct ccgcggacac acgtgggtcc      3480
     taaatatgca ggaccgcttc acaaagtggc tcgagattcg gcccctccgc cgcgccaccg      3540
     ccgaatccgt cgcgagaacc atcgcggaag cgattatatt ccgacacggc tgcccgaccg      3600
     agatattaag cgacaacggc actcaattca aggcgaagga agtcgagcga ctcctcagcg      3660
     ccttcgggat aaagcatcgt ttcacccccg cttacgcccc ccattgcaac ccgaccgaac      3720
     gggtaaaccg gaccgtaaaa accatgatcg cgcagtatgt ggggcgcaat caaaaaacgt      3780
     gggatgaaac gttgcccgaa ctgcagttcg cattcaacac tgcatcaaat gacgccaccg      3840
     ggtactcgcc ggcctactta aatctcggtc gggagccatg ctcggttgtc cgaacaaacg      3900
     aagccaccgt cggccccagc aaacccgacg ccttacgtca aagactcgaa gacgcgtatg      3960
     agctcgtccg cgtcaaccta gcgcgagcct tccaacagca ggcgcgaaat tacgacctaa      4020
     ggcgacggga ctggcgacca aagctcggag agtgggtgtg gaggcgcgat caccccctct      4080
     ccagaaagcg cgacgcmttt aacgcgaaac tcgcgccccg atacatcggg cccctggagg      4140
     tgaaggcagc catttccccc gtaatctacg atttacggag taaacgtggg aaatggcatc      4200
     ggcacgttca cctccaggat ttgaaaccgt cgcccggcaa gaccgaagcc gacagcgccg      4260
     ccgaaacggc gaacgacgac gccgacaacg aaccgaccga cgccgacaac caaccgaccg      4320
     acgccgacgc gacgccgacc gtcaccacca ccgacgagcc cccggcaatc gcaccaaaaa      4380
     gaaggggcaa accgcgkgac gtcaacaaaa aaacacaaca acgaggcccc ggacgaccgc      4440
     ggaaaaattc gagccagagt ataaacaagt aacggccgaa aattaataca agtaggggaa      4500
     aactcgcgac cgccagcgac gcgaccaccg gcaacgagga acgatccgac cctcagatca      4560
     ctgcgaacca ccgacatgga gagtcgagtg aacattgtcg aggagatcga cgcgctctta      4620
     gaggaacgcc cgccgccacc atacgatccg acgcggccgg gaatcgagga gctctacctc      4680
     gatctattcg gaccagactc cgataccgag accgagccac cgaaccgcca gagcgctccg      4740
     gccaggaaaa ccgtgccgaa ggtcggcacg aggatccagc gctccgatgc ggcccagcga      4800
     cgaaaagcca tctggctcgc ggaggcacca ccgccgccgc cgaaacgggg ccgacgatca      4860
     accgaggggt acacggtccg ccctaccatc ggcaaaaccg cctcggtggc caccaacacg      4920
     ccaccgatcg caaagccacg gatggtcgac gtagccaccc agaccagcgc cgagccgacg      4980
     tacaccgccg ctccaacccg ccggcccgac acgacctccg ccgatcccgg tcgaagtatg      5040
     gccgggaatg gtcgtaccgg taccgcatta cgcggtacac aaaaaccgaa aataccgggc      5100
     cgaggtacag gggaggaagt acgtcctgcg gtttaacgcc aacgggacat tacgatccag      5160
     ccggcccacg taagccacta gtttctggct tgcgacggag gggggaga                   5208
//
ID   Gypsy-15_PBa-LTR repbase;    DNA;    INV; 1425 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1425
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 700-700 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1425 BP; 299 A; 536 C; 335 G; 255 T; 0 other;
     tgtaacggag cgcatccctc cgctccattc ctcctccgaa tttcccccga ccgaccatcc        60
     gtcggggacc gccgaacacc aggcggagtg cggcagtggc cgcaaagagg cagcaatgcc       120
     tcctttttaa tacatccata cgcgaactcc gaagcgtcgg agaataccac gaaaacacgt       180
     atgttttcgt ggtatttccc cgcaccgcgc caagcgtcgc gccaacaagc gcgaacgcac       240
     tccgcaccgc gccacgcacc gtaccaccga gcgtgaacgc gtcccgcgcc gcaccgacgc       300
     cgcgccacgc aaccgagcga gcgtcccgca ccgcgccacg accgcgtcca caagcgcgca       360
     accaccccgc accgcgccgt taccttccca ccgaattcct tccctaccaa aaaaccaatc       420
     atcccccgat cctttttttc cgctcctggg gagagggatg ctaaccccga gatcgaccaa       480
     tccgaccgat ccgaccgaaa ataccgaggt cgatctcggg tataaaaagg catcgctctc       540
     cacaggaaat cactcctcgt ttactcctgt tcctagctcg ttttccgaga gcccgtctca       600
     aggaagcgag catccgaaac cggtagcaag cctgagattt gttggggttc tccccaacgc       660
     gccaagttcg cttggcctgg ccgaaagccg tctccgtagc tcgcacggca agccgagagt       720
     tgctggggtc tccccagcgc gtcgagttcg ctcgacccga ctccgccgtt cccgagattt       780
     caccgccgag tatcggggtt ctccccgata ctacctctcc gagcaccagg gtacaccctg       840
     gtcggccgag tacactcggc accgccactt tcttctccgc acacagctgg ggccctcccc       900
     ggctggccga gttcactcgg cattcacgca gacagacgag gggcgcaccc cccgtcagcc       960
     gagccctctc ggcagggaac gggcacaccc gttctccgat ctaaacgatc cgccgacctc      1020
     gcgaaatatc caccctcgcg acaacacccg cgacacgcgt gcacgtttaa atccacgccg      1080
     atttaaaggc ccgcgacgaa cacgtgcgac accgccgccg ccgcgcgcgc cccgcgccac      1140
     cgaactgcgc gccgcgatca gtatcgcgcc gaccgcccga gcgatatctt attttatatt      1200
     cacgcgctat ccgcgcgccg atcgccgtct cgcccgtcca cggccacgaa cattaacgcg      1260
     aagattcggt gcattccatc gcaccactat tagtcaaata aagcatcgtt atttgttata      1320
     attatcgcct aacaatttaa taacaccttt ctgtctccaa cgtcctcgct tcccctcctg      1380
     gcaaccgact gaccgctctc cgcgcgggaa agcgagaccg tttta                      1425
//
ID   Gypsy-15_PPo-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-120
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2985-2985 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 120 BP; 33 A; 24 C; 18 G; 44 T; 1 other;
     tgtcgtgtag gtaactgtaa ataatgtatc caaagattac cctaccaatt atktactttt        60
     gtaattcagt cggattatac atcttgggct tacgcacgtc tttttatttc gtacaccaca       120
//
ID   Gypsy-15_RP-I repbase;    DNA;    INV; 3989 BP.
XX
AC   ACPB02047260;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_RP_;
KW   Gypsy-15_RP-LTR; Gypsy-15_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3989
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02047260; Positions    4134     146.
XX
CC   Positions [3190-3648] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..2026
FT                 /product="Gypsy-15_RP-I_2p"
FT                 /translation="MPKSRKSRDLMEQEELDGMGELQKKMERFSFDPFDRT
FT                 KVSLEQYLDQFERRCEVKGLGGTCMTRREIRKQLLLAYVGAESLGAVKNLL
FT                 IPRQLDSCDYSDILGALQALYKPEKTIFTARIDFEQAVRSEEESLTAFLSR
FT                 LKSLSADCKYGSSLDERLRDRLLGGVRLSKLEKEARMRWPDGQDSSGEPVK
FT                 LEQVYQLARAMERVTEELKQEEIYKVGQSNKFKSKQQDLRARRKEREMREE
FT                 NKGNRAKCENCGRRNHEREECPARKAKCFRCDKEGHFARMCKSSIKRIEED
FT                 QQEYDDTDFSEDDSLKAIKSRVHKVGRAEIKVVLNGVSCEMEFDSGARVST
FT                 ISRSWWTRLGQPPLQPLGNLQGYGKHLLEVLGQALVEVELNGERKKLKVAV
FT                 MKEEDIPLFGLPWIQAFRLHLPKEVSIKKVKNQGKHSDVNVKVGNIINEFK
FT                 ELFQDSLGTIKGTQAAVHLKPYANPIAFRARRVPFPLRRPVERELERLLQA
FT                 GVIEKVDPTKTPILWATPTVNVDKGNGKVRICGDFRVTLNQYIIPDIHPMP
FT                 TFADLTAKLVGGVEFSIIDLRDAYLQMEVAEQVRDFLVIATHLGFFRYGRL
FT                 PLGLSSAPAIFQRWMENLIADIPNVGVNLDDIIITGPTREQHLATVKKSSG
FT                 ENESRRIKCKIR"
FT   CDS           3031..3948
FT                 /product="Gypsy-15_RP-I_1p"
FT                 /translation="MKGTQGVIAMKSIARYYVWWPAMEKDIEQYVAKCQGC
FT                 QENRSNVPEVPLYSWNIPDYPWERIHLDFAGPFQGNYWMVGVDAYSKWPEI
FT                 AIMGKITTEATINRLREWFSRYGVPKKLVTDNGPQFRSGEFKNFCDRNAIK
FT                 HIRTTPYHPKSNGLVERFIRTFKQRYLAGKDEGGSPQEKVARLLLSYRNTP
FT                 HRTTHKSPAELFLKRRLPTVLDRLKPDPKEEMEKEIWKQKRYHDLSIQKRE
FT                 FIEGQEVWIKNELGKGWKPGMINCRTGELSYLVMSEGELKRKHADQLRARI
FT                 GATAPEKEEKEEMS"
XX
SQ   Sequence 3989 BP; 1359 A; 691 C; 1020 G; 919 T; 0 other;
     aattcttgat tacgtattta ctatattggc gacgaggatc aaaatgccta aatcaagaaa        60
     aagccgagac ctgatggagc aggaggaatt ggacgggatg ggggagttgc agaagaaaat       120
     ggagagattt tcttttgacc catttgaccg gacgaaggtg agtctagaac aatatttaga       180
     ccagtttgaa aggagatgcg aggtgaaggg ccttggaggt acgtgtatga cccgcagaga       240
     aataagaaaa caattattac tggcctatgt gggtgcagag agcctaggag cagtaaaaaa       300
     tttacttata cccaggcagc tggatagttg tgactattca gatatcctag gtgcactgca       360
     agctttgtat aagccagaaa aaactatttt tacagctagg attgattttg aacaggcagt       420
     tagaagtgag gaagagtcac ttactgcatt cttaagcagg ttaaaatcac tgagtgcaga       480
     ttgtaaatat ggatctagct tagacgagag gttacgagac agattattag ggggtgtcag       540
     gctaagtaag ctagagaaag aagctcgcat gaggtggcca gatggacaag actcttcagg       600
     agaaccagta aaattagagc aggtatacca gttggctaga gctatggaaa gagtaactga       660
     ggaattaaaa caggaagaaa tatataaggt tggacaatcg aataagttta aatctaaaca       720
     gcaagatttg agggcacgaa ggaaagaaag ggagatgcgt gaagaaaata agggtaatag       780
     agcgaaatgt gaaaattgtg gaagaaggaa ccatgagcgg gaagaatgcc ctgcgaggaa       840
     agcaaaatgt tttaggtgtg ataaagaagg acacttcgct cgtatgtgca aaagttcgat       900
     aaaaagaatt gaagaagacc aacaggaata cgacgatact gattttagtg aggacgactc       960
     cttaaaagcc atcaaatcaa gggtgcataa agtagggaga gcggaaatca aggttgtact      1020
     aaatggagtt tcctgcgaaa tggagttcga ttcaggcgcc cgagtgtcta caattagccg      1080
     gtcctggtgg acaagattag gtcaacctcc attacagcct cttggtaacc tccaaggtta      1140
     tgggaaacat ttattagagg ttttggggca ggctctagtg gaagttgaat tgaatggaga      1200
     gcggaaaaag ctgaaagtag cggtaatgaa ggaagaagat attcccttgt ttggcctgcc      1260
     ttggatacag gctttcaggc tgcacttacc aaaagaagtg tccataaaaa aagtgaaaaa      1320
     tcagggaaaa cacagtgatg taaacgtaaa ggtaggaaac ataataaacg aattcaaaga      1380
     attgtttcag gattccctag gcaccatcaa gggcacgcaa gcggccgtcc atttaaaacc      1440
     ttatgcaaac ccaatagcat tcagggctcg aagggttcca ttcccattga gacgaccagt      1500
     agaacgagaa ttagagaggt tgctccaagc tggagtgatt gaaaaagtgg accctacaaa      1560
     gacgccaata ctctgggcca cgcctaccgt aaacgtagac aaaggcaatg ggaaggtaag      1620
     gatttgtggc gatttccggg tcactctaaa ccagtacatt atcccagata tccatccaat      1680
     gccaaccttt gcagatctca cagcaaagtt agttggggga gtggaatttt caatcataga      1740
     tctccgggat gcctatctac agatggaggt ggcagaacag gtcagagatt ttttggtcat      1800
     tgccactcac ttaggatttt ttcgctatgg cagattaccg ttgggattat cttccgctcc      1860
     cgcgatattc caacgatgga tggaaaattt aatagcggac attccgaatg tgggtgttaa      1920
     tctggacgac atcataataa caggaccaac tcgcgaacaa catttggcaa cagtgaaaaa      1980
     aagttctggc gagaatgaga gccgtaggat taagtgcaaa ataagataaa tgtaggtttc      2040
     ttcaaccaga ggtaacatat ctggggcatc gcattgatca gtgcggtatc catccaacaa      2100
     tggaaaagct ggaagctatt cgtggtgcca agtctccctc tacaaaaagg gagctaagag      2160
     catttctagg ggcaattaat tactatgaaa aatttattcc ccatctgcac agcctctgcg      2220
     cctgtttaca tcgcttgaca attttgaagg tgagatggaa ttggactgaa gatgaagaaa      2280
     aggtgtttca agcgacaaaa cagttattta tgggtaagga gtgcattgta ccatatgacc      2340
     caagaatgcc tatgaccctt atgtgtgacg cgtctgaatc agggttgggg cggttttgtt      2400
     gcataacttc cctgacggaa ccgaacggcc ggtggcatac gcctcaagga cattagcggc      2460
     ggccgaaaaa cattatgcgt ccattgacag agaagcacta gcatgtgtat ttggagtgag      2520
     aaaattccac caatatcttt atgggaacaa attcacttta gttacggatc ataaaccctt      2580
     agagagattg tttggtccca aaagagatct tcccaaagtg actaacaaca gactaacccg      2640
     ctgggcggtt gttctcaata attacaactt cgatgtagaa taccgaaaag ggtcagataa      2700
     ttctgtagcg gatgcattat caagacttcc actgaaaaca gaagataatg ataataatat      2760
     cgatgtcgca gatagcttta tttcaataaa aaagttggaa gatttggaat taacaaaaga      2820
     agaattacaa attcagacta agagggatca aatcttaagc aaggtgagta ctttcgtcat      2880
     caccagctgg ccgccgaaac tcaaagaggt aggaataaaa tactatttcg acaaaaagaa      2940
     tgaaataatt ttagaagggg gcatacttat gtggaacggg agaataatag ttccccagac      3000
     actcagaggg aaaaacgcta gcgactctcc atgaagggca cccagggtgt gatagcgatg      3060
     aagtcgatag cgcgttatta tgtttggtgg cctgcgatgg aaaaagatat agagcagtat      3120
     gtggccaaat gtcaaggttg ccaagagaac aggtcaaacg tgcctgaagt accactttac      3180
     tcatggaaca taccagacta tccatgggag aggattcacc tggatttcgc tgggccgttc      3240
     caaggtaact actggatggt gggagtggat gcttactcca agtggccaga aatagccata      3300
     atgggaaaga taaccacgga agcgacaata aatagactcc gagaatggtt ctccaggtac      3360
     ggggtaccaa aaaaattagt gactgataat ggacctcaat ttaggtccgg agagttcaag      3420
     aatttttgtg atagaaacgc gataaaacac atcagaacca ctccatatca cccaaaatct      3480
     aatggattag tggagcgatt cattagaacc tttaaacaac gatatctggc ggggaaggac      3540
     gaaggaggca gccctcaaga aaaggtagca aggttgttgc tgagctatcg gaacacacct      3600
     cacagaacta ctcataaatc accggctgag ttatttttga aaagaagact ccctactgtg      3660
     ttggataggt tgaagccaga tcctaaggaa gaaatggaaa aggagatctg gaaacaaaaa      3720
     agataccacg atctaagtat ccaaaaaagg gaatttatag aggggcaaga ggtttggata      3780
     aagaatgaat tagggaaagg atggaaaccg ggtatgatta actgcaggac tggagagtta      3840
     tcatatctag tcatgtcaga aggtgaactt aagagaaagc atgcggacca attaagggca      3900
     aggataggtg ctactgcacc agaaaaggaa gagaaggaag agatgagctg aagatggaga      3960
     ggtagatagc taagtaaagc ggggagaaa                                        3989
//
ID   Gypsy-15_RP-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   ACPB02047260;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_RP_;
KW   Gypsy-15_RP-I; Gypsy-15_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-133
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02047260; Positions     145      13.
XX
SQ   Sequence 133 BP; 53 A; 10 C; 21 G; 49 T; 0 other;
     tgtagggatt gaaatataaa aatatattgt cgtatttagt tttaaaggaa acatatgatt        60
     aaaaatttcg aggaccatat gtttccagat tgttgtatta ttctaaaata tgagtaataa       120
     aaagtttcta aca                                                          133
//
ID   Gypsy-15_SI-I repbase;    DNA;    INV; 4381 BP.
XX
AC   AEAQ01023729;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_SI_;
KW   Gypsy-15_SI-LTR; Gypsy-15_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4381
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023729; Positions     442    4822.
XX
CC   Positions [3315-3776] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4349
FT                 /product="Gypsy-15_SI-I_1p"
FT                 /translation="MSLTPEALMALSTAFTEAIREATRMAAESTTGTTTST
FT                 HSKPPSFKISEYRSSDGATVEDYFKRFEWALKLSKIAEEHWANFARVHMGT
FT                 ELNQALKFLVSPRSPEDLTFEQIRDTLKNHIDRAKNKFAESIRFRKICQQK
FT                 DETVASFALRLRQGAVHCEYGEFLDRMLIEQLLHGLESSDTCDEIIAKKPA
FT                 TFDAAFDIAHTLEATRLTANEVKTTMTPAPEATHKLGYTQPKKKYGNKQGR
FT                 QRSSSRNRQQQYQHKQKDFSKKKQDQRCQGCGRDHPRSQCQFRDAECHNCG
FT                 IKGHIATVCRSKKKEKSDQVSDALVPADHVDSIQYFNKVNDINTSNLARKR
FT                 MINVSIDGHNLEMELDTGAPCGIVSKKMLHTIKPTCLLQKTDRQFASYTSH
FT                 KINCIGRLPVNVTIGRTTKRLNLYVVDGNFDTLMGREWISHFTHEIDFAKL
FT                 FSSPDGIHAVSTVPPCLTAEQKGQLDQLLNRFQDVFDDVAGKLSGPPVKIH
FT                 LKPEATPVFAKAREIPYALRDAYAREIDAKIKSGLYKKVDYSEWASTTHVV
FT                 TKKNGKIRITGNYKPTLNPRIIIDEHPIPRAESIFNQMRGATTFCHLDITD
FT                 AYSHLPVDEEFSHALTLNTPTHGLIRPTRAVYGAANIPAIWQRRMESVLQD
FT                 LPKVRNFFDDVLLFADNFADLMITLEKTLERMRSHGLRLNRTKCVFASPSV
FT                 EFLGHKIDAQGIHKSDKHIEAIRDAPKPSTHEELQLFLGKATYYNAYIPDL
FT                 STRDRPLRDILRQETFKWTPAAEKAFKEIKTALISPQVLMPYDPSLPLLLA
FT                 TDASKTGLGAVLSHRLSNGRERPIAYASRTMTTTEQKYPQIDKEALAIVWA
FT                 VQKFFHYLYARHWTLITDHKPLTQILHPEKSLPVLCISRMANYADYLAHFD
FT                 FDVIFKSTKENTNADYCSRASLSSTINAIQDSSPREKEEFDGDEFDHFIIK
FT                 QIKQLPIDAEQIARETRKDPALGKIIKLLETGQNLERAGYKAPESAYKLAS
FT                 NCLVFEHRVVIPLVLRKAMLDDLHAAHLGIVKMKGMARSFIYWPGIDPEIE
FT                 RTAKSCVECAKHAHAPPKFRQHHWDYPKGPWERIHIDYAGPVAGMMLLIVS
FT                 DAFSKWLEVKATNSMTTAATIAILDNLFTAHGVPTTVVSDNGTQFTSSEFK
FT                 SFLQTSGVKYHKLTAPYHPSTNGQAERSVQTVKAALRAMGTTRSTLQEDLN
FT                 RFLRHYRIAPHSTTEQSPSQLFLGRTLRTRLDLVRPDDVFTKVTQKWNSQF
FT                 VPTFRSLKPTQVVYFLSGNPRMDKWIRGIITTRLGDLHYEIDYNGRRFKRH
FT                 IDQIRGHEEGKTTEQSNVTPAPDVSNNWESRQPRRVRFYPDTSEAHTPVAP
FT                 TNAKIQSSPVPQPRTSTRTTTVSEQIPSTASDRGVIRNGHASPPVLPRRST
FT                 RDRRLPNRFSPSR"
XX
SQ   Sequence 4381 BP; 1370 A; 1082 C; 933 G; 996 T; 0 other;
     aagtaagaga tacaacagtg gtgtcagcag tggaatgaga tcaatcagca aaacagcaag        60
     cgtgcaaaat gtcgttaaca cccgaagcgt tgatggcatt gtcgaccgcc ttcacggaag       120
     cgattcgaga agcaacacga atggccgcgg aatcgacaac ggggaccaca acctccacgc       180
     actcaaagcc accatcgttt aaaataagtg aatatcgatc ctctgatggg gccaccgtcg       240
     aagattattt taaacggttc gagtgggcac tcaaattaag taaaatcgcc gaagaacatt       300
     gggccaactt cgctcgcgtt cacatgggaa cagagctcaa ccaggcactc aaattcttgg       360
     taagcccacg atcacctgaa gatctcacat ttgagcaaat acgggatacc cttaagaacc       420
     atatagatcg cgctaaaaat aaatttgcgg aaagcatccg atttcggaaa atctgccaac       480
     aaaaagacga aacggtagca agttttgctc ttcgtttacg gcaaggtgca gttcactgcg       540
     agtacggaga atttctcgac agaatgctaa tagaacaatt attgcatggg ctcgaatcta       600
     gtgacacgtg cgacgaaatt atagcaaaga aaccggcaac ttttgacgcg gcatttgata       660
     tcgcacacac tcttgaagca actcgactta ccgctaatga ggttaaaact acgatgacac       720
     cagctcccga agctacgcat aaactaggtt atacacaacc gaaaaaaaag tacggcaaca       780
     aacaaggacg ccagagatca tcatcacgca atcgacagca gcaataccaa cacaagcaga       840
     aagatttctc aaaaaagaag caggaccagc gatgccaagg atgtggtaga gaccatccac       900
     ggagtcaatg tcaattccga gatgccgaat gtcataattg cggtattaag ggacacatcg       960
     ctacagtgtg tcgatccaag aagaaagaaa aatccgatca agtttctgac gcactcgtac      1020
     cagcagatca cgtcgattct attcaatact tcaacaaggt caatgacatc aacacttcca      1080
     acctagcacg gaaacgaatg atcaatgtct cgatcgatgg ccataattta gagatggagc      1140
     tggatactgg agcaccctgc ggtatcgtaa gtaaaaaaat gttacatacc attaagccta      1200
     catgtttgtt gcagaaaacc gatagacagt tcgccagtta tacgtctcac aaaatcaatt      1260
     gtattggacg actgccagtc aatgtcacaa ttggccgaac taccaagagg cttaatttat      1320
     acgtggtgga tggtaatttc gatacgctca tgggtcgaga atggatctca cacttcaccc      1380
     acgaaataga tttcgcaaaa ctattctcat cgccagacgg gattcacgcg gtgtcaacgg      1440
     taccgccctg tcttaccgca gagcaaaaag gtcagctaga tcaactcctg aatcgatttc      1500
     aagatgtatt cgacgacgta gcagggaagc tatcgggccc gcctgtcaag atacatttga      1560
     aaccagaagc gacaccagtc ttcgccaaag cacgtgaaat accttacgca ctccgtgatg      1620
     cttacgcgag ggaaatcgat gcgaaaatca agtcaggact ctacaaaaaa gtcgattatt      1680
     cagaatgggc gtcgactacg cacgttgtaa cgaagaaaaa tggcaaaatc cgcatcacgg      1740
     gtaattacaa gccaacactt aatccgcgta tcattataga tgaacatccg atcccgaggg      1800
     ctgagtcaat attcaatcaa atgagaggcg caacaacctt ttgtcatctc gatattacag      1860
     atgcgtattc acatcttcct gtggatgagg aattcagtca cgcgcttacg cttaacacac      1920
     ctacacatgg cttgattcga ccgacacgcg cagtgtacgg cgccgcaaat attccagcta      1980
     tctggcaacg acggatggag tctgtcctcc aagatcttcc taaagtacgc aattttttcg      2040
     atgatgtact acttttcgcc gataactttg ccgatctaat gataaccttg gaaaaaacgc      2100
     tggaaagaat gcgctctcat ggtttacgac tcaatcgcac gaaatgcgtc ttcgcatcac      2160
     cctctgtgga atttctagga cataagatcg acgctcaggg catccacaaa tcggataaac      2220
     acattgaggc aatccgagat gcgccgaaac cgtcaacgca tgaagaactc caattatttc      2280
     tggggaaagc cacatactac aatgcataca tcccggatct ttcgacgaga gaccgtccgc      2340
     tgcgagatat acttcgtcag gagactttca aatggacgcc tgctgcagaa aaggcattta      2400
     aggaaatcaa aacagcattg atatcacctc aagtccttat gccatacgac ccgtcgctac      2460
     ctctactttt ggcaaccgat gccagcaaaa caggcttggg cgcggtactc tcacatcgtc      2520
     tcagcaatgg tcgggagcga ccaatagctt atgccagtcg tacgatgact actacagaac      2580
     agaaataccc acagatcgac aaagaagcgc ttgccatcgt ctgggctgta cagaagttct      2640
     tccattatct ctacgctcgt cattggacct tgatcactga tcacaagcca ctaactcaaa      2700
     tccttcatcc agaaaaatcg ctaccggtgc tatgtattag cagaatggct aattatgcag      2760
     actatttagc tcatttcgac tttgatgtga ttttcaaatc cacgaaagag aatactaacg      2820
     ctgattattg ttccagagca tcactatcat caacgattaa cgccatacag gattcttcgc      2880
     cacgagagaa ggaagagttc gatggagatg aattcgatca cttcatcatt aagcaaatta      2940
     agcaattacc aatcgacgcg gaacaaatcg ctcgagaaac aagaaaggac cctgcactcg      3000
     gaaaaattat caaattacta gaaacaggac aaaacctcga acgtgcaggt tacaaagctc      3060
     cggagtcagc ctataaactg gcctctaatt gtttggtgtt cgaacatcgt gtcgtgatac      3120
     cactcgtgct acggaaagca atgctggatg atctacatgc ggcacattta ggtatcgtta      3180
     aaatgaaggg aatggcacga tcatttattt attggcctgg catcgatccg gaaattgaac      3240
     gtactgcgaa atcatgcgtt gaatgtgcta aacatgcaca tgctccccca aagtttcgtc      3300
     agcatcactg ggactacccc aaaggaccgt gggaacgtat ccacatcgat tacgccggtc      3360
     ccgtcgctgg aatgatgctc ttgattgtct ccgacgcatt tagcaaatgg cttgaagtca      3420
     aggcgaccaa ctcgatgacg acggctgcaa caattgccat tcttgataac ttattcacag      3480
     ctcacggtgt tcctaccact gtagtttcag acaatggaac gcagtttacg tcatctgaat      3540
     tcaaatcgtt cttacaaacc agtggcgtta aataccacaa gttaacagcg ccttatcatc      3600
     cctccaccaa tggacaagcc gaacgaagtg tgcagacagt caaagctgcc cttcgtgcca      3660
     tggggactac tcgtagtaca cttcaagagg atctaaacag attccttcgt cattatcgca      3720
     tcgcaccaca ctcaactacg gaacaatcac catcacagct attcctcggt cgaacattac      3780
     gaacacgctt ggatttggtt cgacctgatg acgtcttcac aaaagttact caaaagtgga      3840
     actcacagtt tgttccaacg tttcgctcac tgaagccaac tcaagtcgta tatttccttt      3900
     cgggaaatcc taggatggat aaatggatcc gaggaattat cacgactcgt ctgggagacc      3960
     ttcattacga gattgattac aacggtcgaa gattcaaacg ccatatagat caaattcgag      4020
     gacatgaaga aggtaagacg acagagcaat ccaatgttac tccagcaccc gatgtgagta      4080
     acaattggga aagccgtcaa ccccggcgag tacgattcta tccggatact tcggaagcac      4140
     acacaccggt ggcacctacg aacgcaaaaa tacagtcgtc tccagtgcca caaccaagga      4200
     cttcgactcg tacaacaacg gtttcagaac agatcccatc aacagcatcc gatagaggcg      4260
     ttataagaaa cgggcacgcc tcacctccag ttcttcctcg gagatcgaca agggatcgtc      4320
     gtcttccgaa cagattctct ccaagtcgct aatcgggaga atttccgttg aggggaggaa      4380
     a                                                                      4381
//
ID   Gypsy-15_SI-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   AEAQ01023729;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_SI_;
KW   Gypsy-15_SI-I; Gypsy-15_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-252
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023729; Positions     190     441.
XX
SQ   Sequence 252 BP; 62 A; 72 C; 35 G; 83 T; 0 other;
     tgttatgttt ggaattaccg ccatatgcat ttcgcacact acacccgtgt acctctctcg        60
     accaataaga agccgccttt cttttcatga tcactgaccc atctatatta tccggtaacc       120
     ttccgggcct tcccagagag tcaatctatg tattcagtct tttcttttag tctgtctgta       180
     tcccgtaaca ataaactcgg cattgcatta taaatatccc tcttgcttaa ttgtgaatca       240
     cccacaccca ca                                                           252
//
ID   Gypsy-15_SiCu-I repbase;    DNA;    INV; 4228 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4228
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5039-5039 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..4134
FT                 /product="Gypsy-15_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGSTVKVELSSDSDSDSTKSSTTTASANTSKNPPPP
FT                 NPKPKKKKKKMPQQIVGVLPAFDPKRDDLEMWWATFENFLVANDLSTASSE
FT                 ARCVGILLSSIGLETYTVLNTLLSPDAPSSKKLPELKKALVGHYKPAPKAV
FT                 AERFRFTGRKQTPGESVHEFEAALRKLAIHCKFGAELENRVRDQFIFGLQS
FT                 ETAQRQLFTKDDNIALKDVVSLASAQEAAEASTALVRGKVQQQQPNDQVHK
FT                 VYSSNPKHTSNNKQQANKNWGNNKFKGKKQNFHQQKTAKQSSSSPGGDHST
FT                 CQGCGSTDHSRSKCKFLHAKCHTCNKIGHISTVCRSTKGSTNHHLSLDSVS
FT                 DMNMVRSSNKRLITLDVIINGQPHSMELDTGCETSVISDDFYKNQLRSHPA
FT                 LSPSRHVFRTYTKETFKPVGDLMCTIQHEGQQFSTKIPVSKGSSLFGKDLL
FT                 RFFKINWKNVESQCHQVADHTTDLDSLLKEYQDVFQPPTSADRIKGYTARV
FT                 ILKDDATPRFLKARPIPYALRDKVDKELSMMEATGVITKVETSEWASPLVV
FT                 VPKNDGRVRITGDFKNTVNNQLCVTQYPLAIPDDIFATLSGCSTFSKLDGS
FT                 NAYHQLQLDEKSKCFLVINTHRGLFRYNVLPQGIASSPAIFQAFMDSMLKD
FT                 VPHTGGFVDDAISGGTDTVSHLSQLRTILERCRKHNYKLSPQKCQFVQPRI
FT                 EFLGHVISEKGIQTSSRKVQAIQQIPQPQSVTEVKSFLGLVNFYGKFVDKL
FT                 SSICEPLYHLTKKDVDFEWSTKCQQAFENVKKMLSTAPTLTYFDPAKPIGV
FT                 SCDASPVGLGVVLFQREDNGFERPIAFASQLLSTTEKNYSQIEKEGLSIIF
FT                 GVKKFYKYLCGRQFTLITDHKPLLTIFGPKSQLPPLVATRLHHWSLFLSQF
FT                 TYDVIYRKSDEHGNADALSRLPAQQPHHATPYHESCVNSVANQQLETLPVT
FT                 SSQIRHATLKDPILSKVMQLVLYGWPPKLREGDSNLKSFFARRLELTIHQG
FT                 VLMWGIRVIIPSSLQQRILQQLHEAHLGIVRMKALARQHVYWPGIDKCIEA
FT                 LCKSCVTCQQSAASPPSSPLHPWIFPEKPWQRLHMDLAGPYLNNMWLIITD
FT                 AHTKWPEVFIMNNSTTTTAVLQKLVELIARFGLPEQIVTDNGRQFVSADFE
FT                 AFCKENAIKHILSSPYHPRTNGEAERFVRTFKEAMKCTDLPAQLRLQRFLL
FT                 AYRTTPHSTTGVPPAELLQNRPLRTLLDLLHPNVSTTARKSQANQESVYNK
FT                 NVKSREFHLQDPVWVKTYLKGEEKWTMGTIIGIVGPLTFNVKVEDRILKRH
FT                 SDQIRKASTPAPHVQPSIDLATAPPPLSSSPAAPSP"
XX
SQ   Sequence 4228 BP; 1176 A; 1205 C; 870 G; 977 T; 0 other;
     ttggcgacga gtgatgtgtt ttctgtgcta aagtgaatgt ttcacgttac cccatcgctg        60
     caaaccgaca aaagttatta atttctcttc atgagtggat ccacggtcaa agtagaattg       120
     tcttctgact ccgactcaga ttctacaaaa tcgtccacta ctacagcttc cgctaacacc       180
     tctaaaaatc caccaccacc aaatccaaag cctaaaaaga agaagaaaaa gatgccacag       240
     caaattgttg gtgttctacc ggcttttgat cccaaacggg atgacctaga aatgtggtgg       300
     gccacatttg aaaacttcct cgtggccaac gacctcagca ccgcctcgag tgaagcacgg       360
     tgtgtcggaa tcctgctctc atcgatcgga cttgaaacct acacagtcct caacacactt       420
     ctgtcccctg atgccccttc atccaaaaag ttacctgagc tgaagaaagc tctcgtgggg       480
     cattataagc ccgctcccaa agcagtcgcc gagcgattta ggttcacggg gagaaagcaa       540
     acccccggag aatccgtcca cgaatttgaa gctgctctac gtaaacttgc aatccactgc       600
     aagtttggtg ccgagctgga gaaccgcgtt cgagaccaat ttatttttgg cctccaaagt       660
     gaaacggctc aacgccagct cttcaccaaa gacgacaaca tcgccctgaa ggatgtcgtc       720
     tccctcgcct ccgctcagga agcagcagaa gcctctactg ctcttgttcg gggcaaagta       780
     caacagcagc agcccaacga tcaagtacac aaggtgtata gctccaatcc taagcacacc       840
     agcaacaaca agcagcaagc gaacaaaaat tgggggaaca acaagttcaa aggaaagaaa       900
     caaaactttc atcaacaaaa aacagctaag cagtcctcat catctccagg aggagatcac       960
     agcacatgcc aaggttgtgg ctcgactgac cactctcgaa gcaaatgtaa atttttgcac      1020
     gctaagtgtc acacgtgcaa taaaattggc cacatctcaa ccgtctgcag atccacaaag      1080
     ggaagcacaa atcaccatct cagcttagac tcagtttcgg acatgaatat ggtccgctcc      1140
     agcaacaaac gccttattac attggatgtg ataataaatg gccagcccca ctccatggag      1200
     ctggacaccg gctgcgaaac aagtgtcatt tcggacgact tttataaaaa tcaattgcgc      1260
     tcccatcctg ctctctctcc ttcacgccac gtctttcgta cgtacaccaa ggagaccttc      1320
     aaacctgttg gtgatttgat gtgtactatt cagcatgagg gtcagcagtt ttcaacaaaa      1380
     attcctgtca gcaaaggctc ctccctcttt ggaaaagacc tcctaagatt ttttaaaatc      1440
     aattggaaaa atgtggagtc ccagtgtcat caggtggctg atcataccac cgacctggac      1500
     tccctcctca aggaatatca agacgtattc cagccaccca cctcagccga ccgtatcaaa      1560
     ggatacactg cccgtgtgat cctcaaggac gacgccactc caagattcct caaagcccgc      1620
     cccatcccgt acgcgctccg tgacaaagtg gataaggagc tcagcatgat ggaggccacc      1680
     ggagtaatca ccaaagtgga gaccagtgaa tgggcttctc cacttgtcgt cgtgcctaaa      1740
     aatgatggaa gggttcgcat caccggcgat tttaaaaaca cggtgaacaa ccagctgtgc      1800
     gtcacccagt atccccttgc cattcccgat gacatttttg ccaccttatc tggttgctcc      1860
     accttcagca agttagacgg atctaacgcc taccaccagc tccagctcga cgaaaaatcc      1920
     aaatgttttt tggtgattaa cacccaccgg ggactctttc gctacaatgt ccttccccaa      1980
     ggcatcgcat cctcccctgc catcttccag gccttcatgg attcgatgct caaggacgtc      2040
     cctcacacgg gtgggtttgt ggatgacgct atctccggtg gcactgacac cgttagccac      2100
     ctcagccaat tgcgtaccat actagagcgt tgtcgtaagc acaattacaa gttgtcacct      2160
     caaaagtgcc aatttgtaca gcccagaatc gagttcctgg gacacgtcat ctcagaaaaa      2220
     ggaatccaga ccagcagtag aaaagtgcag gcgattcagc agataccgca accccagagt      2280
     gttacagagg ttaaatcgtt tctgggcctg gtaaacttct acggaaagtt tgttgataag      2340
     ctttcctcca tctgcgagcc tctataccac ctaaccaaga aggatgtgga tttcgagtgg      2400
     agcaccaagt gtcagcaagc atttgaaaat gtcaagaaaa tgctgagcac cgcccccact      2460
     ctcacctatt ttgatcctgc aaaacccatt ggggtatcgt gcgacgcatc cccagttggt      2520
     ctcggagttg tgttgttcca gagagaagac aacggttttg aacgccccat tgccttcgcc      2580
     tctcagctgc tttccactac ggagaaaaac tattcccaaa ttgagaagga agggctatca      2640
     attatatttg gagtaaaaaa gttttacaaa tacctttgtg gccgtcagtt cacgttaata      2700
     actgaccaca aaccgctatt gaccattttt ggaccgaagt ctcaacttcc ccctttggta      2760
     gccacccgac ttcatcattg gagtctgttt ctgtcccagt tcacgtatga cgtcatatac      2820
     cggaagtcgg atgaacacgg gaacgcagac gccctttctc gcctacctgc tcaacagccc      2880
     caccacgcca ctccatatca tgagtcttgt gtaaactcag tggctaatca acagctggaa      2940
     accctacccg tcacatcatc acaaatacgc cacgccacct taaaggaccc gatcctgtcc      3000
     aaagttatgc agcttgtgct gtatggatgg ccaccaaagc tccgtgaagg ggattccaat      3060
     ttgaaatcct ttttcgctcg acgattggag ctgaccatcc accaaggtgt gctaatgtgg      3120
     ggtattcgtg tcatcattcc ctccagcttg cagcagcgta tcctccaaca actccatgaa      3180
     gctcatctcg gcattgtcag gatgaaagca ctggccagac aacacgttta ttggccagga      3240
     atagacaagt gcattgaagc actttgcaag tcttgtgtga cttgtcagca gtccgcagcc      3300
     agtcctccca gctcgccact tcacccctgg attttccctg aaaagccgtg gcagcgtcta      3360
     cacatggatt tggcagggcc ctacctaaat aatatgtggc tcatcatcac cgatgcccac      3420
     accaaatggc cggaagtgtt catcatgaac aactccacaa caacaacagc tgttctgcag      3480
     aagctcgttg agctaattgc acgattcggg ctaccagaac aaatcgtgac tgacaatggt      3540
     cgtcagttcg tgtctgcaga ttttgaagct ttttgcaagg aaaatgccat aaagcatatc      3600
     ctctcctcgc cttaccaccc cagaacaaac ggtgaagccg aacgttttgt acgcacgttc      3660
     aaagaagcca tgaaatgcac cgatctacca gctcaactac gcctccagcg tttcctgctc      3720
     gcttaccgga caacacctca ttcaacaact ggcgtcccac ctgcagaact cctccaaaac      3780
     cgtcctctcc gtactcttct ggacctactc catccaaacg tctccaccac agcacgcaaa      3840
     agccaagcta atcaagaaag cgtgtacaac aaaaatgtga aatcccgcga gttccacctc      3900
     caggacccgg tttgggtcaa gacctaccta aaaggggagg aaaaatggac aatgggaacc      3960
     atcatcggca ttgtcggccc cctgaccttc aacgtcaagg tggaagacag aatcctgaag      4020
     cgccattcag accagatccg aaaggcgtcc accccggcac cgcacgtgca accttcaatc      4080
     gatcttgcca cagcaccgcc accactctcc tcatctccag cagcaccatc accttgaacc      4140
     tcaagtcatt cggacttatc ataaatttca attctttttg ataattagat tctgctctgt      4200
     attatgtttc ttagtaggga tgaggaaa                                         4228
//
ID   Gypsy-15_SiCu-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-311
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5092-5092 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 311 BP; 90 A; 83 C; 34 G; 104 T; 0 other;
     tgttggatat tcaatcttat gatttaatta ttgtcaatta tgctaatata ttgaatttgg        60
     agactccgtc tcctcttgcc tacgtgacca agaagtcacc caacccaagc caactctaac       120
     cttgaaaaac aattaaacct attctatctc ttgtcactat tgctgttcca gcaactcatg       180
     tcaccattca ctctttagct cttactgaat aaactaatat tcttcctaaa cctcacgcat       240
     cacacatttt acttctcctc gtgctcatgc tcaacttggc atatcgcatc tcagagaatc       300
     catatactac a                                                            311
//
ID   Gypsy-15_SiOr-I repbase;    DNA;    INV; 5635 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5635
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 351-351 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..2259
FT                 /product="Gypsy-15_SiOr-I_1p"
FT                 /translation="MMKIEPDRLVKEELEYEIKIRGILPTGNVKELTRTLR
FT                 DLLTLENEGHSFSMKVEFDAESEIKICQEKLIDLESLIKAPLSEAIIRKLK
FT                 SKLGHLVGRCERITSNDKEIIEIKAKLLTDIFKYVSLFRKLCEEHKGSSEP
FT                 LDIQFQQSLITSTPNRSSSNATENQSATGLPVLMNNLSLNKRVNFSSWGLT
FT                 FSGDSDTMGLNAFLERIEELCEAHNVSHDDLFRGAIEIFEGKALIFYRALK
FT                 GKVNDWKTLCEHFREEFLPRDYTERLWEQIKSRTQGEKESITIYVAYMTNL
FT                 FNRCSASINEAMKLKILRKNILPFYQTQLGLVDISTVDELIKLCKRIEDSR
FT                 VNVLNFVPPTVDKHSVEPDLLYKANAIEKQSRKRLDSLEAEKQVSFNLQPS
FT                 NKQISNNKSRNYSSDRESTDRNAHLGRNREISNDRLNRGSVREQDRRTGTV
FT                 NKWRDGSYDRARFYRNRSNDRSSSVESYNGDRFYQDRSRERHNTPERYYNK
FT                 NRLSRNNDYFAGNQPRENSFNRGRSSCRDRSDLGSYREHRNSRYDSYNRDL
FT                 DNNTRGNVVKCYRCNGDNHLARHCKAQVRKCFSCGLLGYTKVSCPKCNKQG
FT                 NGSRS"
FT   CDS           2238..5471
FT                 /product="Gypsy-15_SiOr-I_2p"
FT                 /translation="TGKRFEELSVNRASTSTVLSVDNFGLDSSIDNFCSKD
FT                 ELFNFNTYSKPILDYMLTQAGDGECPYVSVRLYDWEVKGLLDSGANRIFVN
FT                 EHTMNVMLSLGVKLQNVSDMTCTVANGSELECLGFMSVPIKLKNKIVVFQV
FT                 YILNNLRHRLVLGTEFWIKMGIVPDLRRGEWHFGEQDHKDILVTNSISTSD
FT                 DLSLAQREKLNIIVEKYFDSIKHIKLGCTSLVEHEIIVTQNSPIKQKNYRV
FT                 SQAIQNKIDLEITKMLELGVIEKSTSSYSSPIVMIPKKDNTYRFCVDFRKI
FT                 NSISEKWAYPLPNLSTILDRLGNAKYLTTLDIQSAYWQIKMSENSKKYTSF
FT                 AIPGRGLFHFNRMPFGLTNAPATFQALVDKLFGPELEPYCFKYLDDIVIVT
FT                 PDIETHFSVLEEVFKRLKESGLTLNKDKCQFCRSELKFLGYIINRQGLQVD
FT                 PSKVSAVVDMPKPKSTKEVRRILGMISWYRRFVPHFSSLVSPLTDLTRKNA
FT                 KFVWSAQCEEAFQQIKNCLVSAPILSCPNFNEEFIVECDASSYGLGAVVLQ
FT                 RYDGQEHVICYMSRTLTRCERKYTVTELECLSVIWAVERARCYLEGTHFTV
FT                 VTDHHSLLWLHNLKNPQGRLGRWALRLQAYDFNIIHRPGKEHKVPDCLSRQ
FT                 LKLDMLNIKLDTGKTDNWIEKMKKNINNNPLQYPNWRISGNGDLYKHVGKH
FT                 RDHVNDASWKKVVPKSERKLLLAKYHDNPLNGGHLGIFKTYHKISEHYFWP
FT                 GMKSEVCKYVNKCKVCGEQKPEQRMKAGMMGEKPVVKRCWQYVATDLVGPL
FT                 PRSSKGHQYILVYSDYFSKFSLFFPLRKATASKVSELIEQSFLLFGVPEFL
FT                 KADNGVQYKSKEFSALLNKYSVKFLANPLYHPEPNFTERVNRVIKTMISCY
FT                 VKENHKKWDQYLLELSCAYRTAKSEVTGNTPYFVNFGCEMMVDGKDYKRER
FT                 ERDECKSDSENVKTEGRSVVLERLRKLVTEKLQSVHEKTKHQYNLRHRPVT
FT                 FNVGDFVWKKEYNLSDAARGYTAKLGKKYTGPYKIKNKLGINVYELMDEHG
FT                 TSKGNWHVKDLKPYKGEAEPQ"
XX
SQ   Sequence 5635 BP; 2004 A; 714 C; 1148 G; 1769 T; 0 other;
     aatggcgccc gagcagttgt aagagtccgc aggagagagc aaagcatttc atcagtttcc        60
     atcatcgtca ggatcaccaa gaagtcccta ctcatcaatt taacagtcaa cagtctacgc       120
     tggatgtgcc aagtccaacc taactcgaga gtaattggat aaaattggta gatatattta       180
     ttgtaaactg tgtatttttt cccgcatttt ttttggtact ttgcactcta tttttctgag       240
     attataagag ggtattttaa aaaaaaatat agattatatt tgctggttag attgctcaat       300
     tggtttattc agctttctct ttaaatttaa agtttgaaat ttttaatagt aagttaattg       360
     ataatttatt ctgaatttat ttgaattttt ttttaatctt tatataagtc ctattttcta       420
     tttctatttc gtatcataat acttatcaaa atgatgaaaa ttgaacctga taggctcgta       480
     aaggaagagc ttgagtatga aattaagatt agaggaattt taccaactgg aaatgtcaaa       540
     gagttaacaa ggacacttcg tgatttgcta actttagaga acgagggtca ttcatttagt       600
     atgaaagttg agtttgatgc tgagagtgaa attaaaattt gccaggaaaa attaatagat       660
     cttgaatctc tgattaaagc tccactatcg gaggccatta ttagaaaatt aaaatcaaaa       720
     ttagggcatt tagtaggtcg ttgtgagaga attacttcca atgataaaga aataatagaa       780
     ataaaagcaa aactcttaac tgatattttt aagtatgtat cactttttcg aaagttgtgt       840
     gaggaacata agggatcgtc agaaccttta gatatccaat ttcagcaaag tttaataact       900
     tcaactccca ataggtctag ttcaaatgca actgaaaatc aaagtgcaac tgggctgcca       960
     gtattaatga ataatttaag tcttaacaaa agggttaatt tttcttcgtg gggtttaact      1020
     tttagtgggg attcagatac aatgggatta aatgcatttt tagaaagaat tgaagaactg      1080
     tgtgaagctc ataatgtgtc acatgatgat ttattcaggg gtgctattga aatttttgag      1140
     ggaaaggctc ttattttcta cagggcatta aaagggaaag ttaatgattg gaaaacttta      1200
     tgtgaacatt tcagggaaga atttttgcct agggattata ctgaaaggtt atgggagcaa      1260
     atcaaatcaa gaactcaagg ggaaaaagaa tccattacaa tttatgtagc atacatgact      1320
     aatttattta acagatgctc tgcatcaata aacgaagcta tgaaactaaa aattttgaga      1380
     aaaaatattt taccatttta tcaaacgcag ctagggttag tggacatatc tacagtggat      1440
     gaacttatta agctttgtaa acgaattgag gatagtagag tgaatgtttt gaattttgta      1500
     ccgccaacag tagataagca ctcagttgaa ccagatttgc tatataaggc taatgcgatt      1560
     gaaaaacaaa gtaggaaaag gttagatagt ttggaagcag agaaacaagt cagttttaat      1620
     ttacaaccaa gtaataaaca aatttcaaat aataaaagta gaaactatag ttcagataga      1680
     gaaagtacag atagaaatgc tcacttaggt agaaatagag aaattagtaa cgataggtta      1740
     aatcggggta gcgttaggga acaagacaga cgaactggga cagtaaataa atggagagat      1800
     gggtcatatg atagagctag attttatagg aataggagta acgatcgttc gagtagtgtt      1860
     gaaagttata atggggacag attttatcaa gacagaagta gggaacgtca taatacccca      1920
     gaaaggtatt ataataaaaa taggttaagt agaaataatg attattttgc tgggaatcag      1980
     cctagggaaa atagttttaa taggggcagg tcgtcctgta gggatagatc tgatttaggt      2040
     agttataggg aacatagaaa tagtaggtat gatagttata atagggattt ggataataac      2100
     actagaggga acgtcgttaa gtgttataga tgtaatgggg ataatcattt agcaagacat      2160
     tgtaaagcgc aggtcagaaa gtgtttttct tgtgggttat taggttatac aaaagttagt      2220
     tgtccaaaat gtaataaaca gggaaacggt tcgaggagtt aagtgtaaac cgagcttcaa      2280
     cttcgacggt tttatcggtt gataattttg gcttagattc tagtattgat aatttttgtt      2340
     ctaaggatga actgtttaac tttaacacat atagtaaacc aattttagac tacatgttaa      2400
     ctcaggccgg agatggtgaa tgtccatatg tttcagttag gttatatgat tgggaagtaa      2460
     aagggttgct tgattctggg gcgaatagaa tatttgtcaa tgagcacact atgaatgtga      2520
     tgttaagttt aggggtaaaa ctacaaaatg tttctgacat gacttgtact gtcgcaaatg      2580
     gctctgaact cgagtgtcta ggatttatgt cagtgccaat taagcttaaa aacaaaatag      2640
     tcgttttcca agtatatatt ttaaacaatc ttaggcatag gttagtgcta ggaaccgaat      2700
     tttggattaa aatggggatt gtaccagatt tgagaagggg tgaatggcat tttggggaac      2760
     aagatcataa agatatctta gtcacaaatt ctatttcaac gtcagatgat ttatctttag      2820
     cacaacgaga aaagttaaat attattgtag aaaagtattt tgattcaata aaacatatta      2880
     agttagggtg tacatcgtta gtggaacatg aaattattgt aactcaaaat tctccaatta      2940
     aacagaaaaa ttacagagta agtcaggcaa tccaaaacaa aattgactta gaaataacaa      3000
     aaatgttaga gctaggcgta attgagaaaa gcacaagttc ttatagttct ccaatagtaa      3060
     tgattccgaa aaaagacaac acatataggt tctgcgttga ttttaggaaa attaattcaa      3120
     tttctgaaaa gtgggcatac ccattaccaa atttaagtac tattttagat cgtttaggaa      3180
     atgcaaagta tttaacaaca ttagatattc aaagcgcata ttggcaaata aaaatgagtg      3240
     aaaatagtaa aaagtatact agctttgcaa taccaggaag aggtcttttt cattttaata      3300
     gaatgccatt tggcttaact aatgcgcccg ctacttttca ggcattggtt gataaacttt      3360
     tcggtccgga attagagcca tattgtttta aatatttgga tgatatagta attgtaacgc      3420
     ctgatattga aactcatttt tcggtattag aagaagtatt taagcgtctt aaagagtcag      3480
     ggttaacttt aaataaagat aaatgtcagt tttgtcggag tgaattaaaa tttttaggtt      3540
     acataatcaa tagacaggga ttgcaggtag atccaagtaa agttagtgca gttgtagaca      3600
     tgccaaaacc aaagtcaact aaagaagttc gtagaatttt aggtatgata tcttggtata      3660
     gacggtttgt accacatttc tcaagtttag tatcgccttt aactgattta accagaaaaa      3720
     acgcaaaatt tgtttggtct gcccagtgtg aagaagcttt tcaacaaatt aaaaattgtc      3780
     tagtcagtgc tccaatttta tcttgtccaa actttaatga ggaatttatt gttgaatgtg      3840
     atgctagttc atatgggtta ggggcagtcg ttttgcaaag gtatgatggt caagaacacg      3900
     taatttgcta tatgtctcgt acattaacca gatgtgaacg taagtacaca gtcacagaat      3960
     tagaatgttt aagtgttatt tgggccgtag aacgagccag atgttattta gaagggactc      4020
     atttcacagt tgtaactgac catcatagct tgttatggct ccataattta aagaaccctc      4080
     aaggtagatt aggtaggtgg gcattgcgct tacaagctta cgattttaat atcattcata      4140
     gacctggtaa agaacacaaa gtaccagatt gcttaagtcg acaattaaaa ctcgatatgt      4200
     taaatataaa actagacacg ggtaaaacag acaattggat tgaaaaaatg aaaaaaaata      4260
     ttaataataa tccgttacaa tatccaaatt ggcgtatttc gggaaatggc gacttgtata      4320
     aacatgtagg taaacatagg gatcatgtca atgacgcatc ctggaaaaaa gtagtaccaa      4380
     aatctgaaag aaaactttta ttagctaagt atcatgataa tcctttaaat ggtggacatt      4440
     taggtatttt taaaacttat cataaaatta gtgaacatta tttttggcct ggtatgaagt      4500
     ctgaagtttg taaatatgta aataagtgta aagtgtgtgg tgagcaaaag cctgaacaaa      4560
     gaatgaaagc tggaatgatg ggtgaaaaac ctgtagttaa gcggtgttgg caatacgtgg      4620
     caacagattt agtaggtcca ttacctcgta gtagtaaagg tcaccaatat attttagttt      4680
     actcagatta ttttagtaaa ttctcattat tttttccatt acgtaaagct actgcttcca      4740
     aagtatctga acttatagaa caatcatttc tcttatttgg tgtgccagaa tttttaaaag      4800
     ctgataacgg agtacaatat aaaagtaaag aatttagtgc attattaaat aaatacagtg      4860
     taaaattttt agccaatcct ctttatcatc cagaaccaaa ttttacagaa agggttaata      4920
     gggtaataaa aacaatgatc tcttgctatg ttaaggaaaa tcataaaaaa tgggaccaat      4980
     atttgcttga attatcttgt gcatatcgaa cagcaaaaag tgaagttacg ggtaatacgc      5040
     cttatttcgt gaattttggt tgtgaaatga tggtggatgg caaagattat aaaagagagc      5100
     gtgaaaggga tgagtgtaaa agtgatagtg agaatgtgaa gacagaggga aggtcagtag      5160
     tgttagagag gttgcgtaaa ttggtaacag aaaaattaca aagtgtccat gagaaaacta      5220
     aacatcaata taatcttaga catagaccag taacatttaa tgttggtgat tttgtgtgga      5280
     aaaaagaata caatctttcg gatgcggcta gaggttacac tgctaaatta ggcaaaaaat      5340
     acacaggtcc ttataaaatc aaaaacaaat taggtataaa cgtatatgag ctaatggatg      5400
     aacatggcac atcgaagggt aactggcatg taaaggatct gaaaccgtat aagggggagg      5460
     ccgagccaca gtagcatttt tgttgttttc tcttttcgct aatttgctta ttactttgaa      5520
     aggtagtttt tgtgtcttat ggagtgtcgg tattcttatt aaaaatattc tattcttgtt      5580
     aaagatattc taaaaaaaaa atattctatt tttttttccg taggtaaggg gggta           5635
//
ID   Gypsy-15_SiOr-LTR repbase;    DNA;    INV; 1891 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1891
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 384-384 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1891 BP; 560 A; 261 C; 296 G; 774 T; 0 other;
     tgttacggtt atatatttta aaggggaatt aattttctta tatttatttt aattgatata        60
     tcttgacaaa atggtgaatg tggtgattta ttattttgtt tataaccttg aagatggcac       120
     gttaataaaa tataacaata catttcttaa tacatattaa ttatttattt attttctatt       180
     tacaagtaaa gtaaatgtgc attaacttta aatcataatt taacttcata ttgttgtatt       240
     tttagccaaa tgtaatattt tgtaaataat atctttgact cgatcttgag gtattattct       300
     tcaggttatg gaagggtaaa tgcatcgtgt aaagacttct tatttatcta aaataacgtt       360
     aattaaagta atattaataa taaccacttt atatacttac ttttggtatt tgtttacttc       420
     tgttcaagtg gaaatattca ttgcattttg ttagttgttt ggttgctaca aagggaaacc       480
     atattatatt aattatatta tacgaaacga tgtacatacc tttttaataa caataatacc       540
     ttcaataatt attattaata aataatctga ttgtgatttt tgtttagatt aattaatttg       600
     tggttagggc agaaacgtca aatcatcaac gggtctaacg gtgttgccag cttcttgaag       660
     ttttcttaaa tcatatttca cctcattcat atttagtctc taaataatta attttagcat       720
     ttaacttatt ttaatacttt tatttattaa tgatcttaaa ctcttatcaa ttgtatctag       780
     ttgtaattgc atttaactta ttattattgt ttgatttatt attaagtttc ttttattatc       840
     ggattactcc tggcaacatt ggtacttaac tggttgcgga tgtacctagg gattttatag       900
     ctaaatttat atcaggaagg ggtatcgata ttaaaattcc aagcgcccac ctgtctggtg       960
     atttcctctt tttttctttt cggcacgctg gcagtgaagt cacgttttga gttggaaaaa      1020
     tcctttcatt tgattttggg aaaggttaat aattctctac gtttaattga tattagtgta      1080
     tatcatacag ctacggctgg attgagacga aactaatagc gttgcatctt tttgtattat      1140
     ttccaaggga aatcgcccac agtttgggta agttaatttt ggtttattaa ttatcacgtg      1200
     ggacaaattt ttattgggtt aattttaaat taggcacctt ggtttggttt ttcttttacg      1260
     caccaacttg attccacgag ggttttcacg actagctagc gaggttcctg ttcaaacctt      1320
     agacgttcca aaccaacata taatctaagg ggaagccacg tggttgggcc ttctggttgt      1380
     gcggcagatc cgggcgtagg ggatttttgg gacccttacg aataaaagct aagtaccaaa      1440
     ctctttatta gctccctctc gttcctgcgt acttaataaa tattgtacct attttttttt      1500
     gttgcttctg attagtttta gttaaagacc atttatttag taatttaagt atcatttata      1560
     tagtaggtac cccgtttttc atttatatta aattttagta gagtaggtaa tttttttagt      1620
     ctaggttaca ctaactgtct ctaacgggta accagtatta ccaattattg caaatattta      1680
     atttataata tagtcatttt aatttctcta tattattgta ataattattt aaaccatttt      1740
     aaattgtatt gtttcaaatg atgagctacc ctacatctga ataaacgtct gtcttgttaa      1800
     tctgtgtttt attgtgtaat tacattgaac taaaatttgg tgttttatat aggtacaatt      1860
     ttgaacccac ctcccaaacg ggaaggtagc a                                     1891
//
ID   Gypsy-15_SpEx-I repbase;    DNA;    INV; 6610 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6610
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4084-4084 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           820..5751
FT                 /product="Gypsy-15_SpEx-I_1p"
FT                 /translation="MERVSPDEKRCRSRRLQTPMPPRSPILPTMGVERDAK
FT                 NSSGMRRSRSRMRHECGSQVRSRSRSLHRTQCAQRSHHSNRELSHQNLNMN
FT                 RNSLENRPSRNREICDGYQQRSHSRSRRRNSRRSRSHARREVNRRSRSGTR
FT                 KRNDENNELRERLFLLEQELKRQRSRNVISHDIADSHRRQFSPSRMMRSPL
FT                 GSDTENPVSERPRVVEPAKFLEEFVKIFKGRDRESFPVLNNVLSDFDPLSR
FT                 EQTIEMWISKVDECAEIYNWNDRQTVHYALPKLVGHAKTWYQGLPTIRHSW
FT                 KEWKVLLRESFPSTENYAELLTEMLNRRARPGDSLELYYFSKINLLNRCKI
FT                 FGKQAVDCLIFGIEDKGIRLSAQAGKFNKPEETLEFFKTVKSHPREYSEGI
FT                 RREGTSKDNKRFQSFTATSTNSEATKIIDKTFRNRPKGNAVCFNCKEVGHM
FT                 SYQCRKPITKCSECNFLGHDSNICPKRSNNSNNGNVSSKNINDNKPKSVLE
FT                 VSINDDSNDKYRVGIKINGVVIACQVDLGSQATLVRKADAHKIGLQWDTVQ
FT                 GPLLRGLGSIPYVPVGKTFVTIEIQDIREEQVEVLIVDDSLINIPVLLGHS
FT                 FTERPNLRIIKTATDLRFEKVDVSGEVKLLLVTVDDFELDIGGLRAVTVGA
FT                 KTNYSGSIYVGGSIRGKPDREYYLLPGEYQMTNGVCRVLIQSLSSKKINFC
FT                 KDALVSRARTTFSQDRLLDVLQINTELVNESHVNSIKMGERLTISEKDKCQ
FT                 ALLSKYKGCFSTGLHDLGYTSVAEMEIHLTDTTPVVYKPYRLSHSERAYVQ
FT                 GLVEEMVEHGIVRESSSPYASPIVLVQKKSGEKRLCVDYRALNRRTKRDHY
FT                 PLPRIEDLLDQLSGQSLFTTLDLASGYHQIAIAEASKAKTAFVTPEGQYEY
FT                 NRMPFGLANAPAVFQRVIHKILNKTKVPFVIIYMDDILIPSRSFDEGLQRL
FT                 DQVLALLLDAGLTLKMEKCYFFQEKIVFLGFEIDKLGIRPGEQKTQAVSKF
FT                 PVPRNQSDVRRFLGLAGFFRRFVKDFALVAKPLTNLLRKDIAWHWAESQEN
FT                 AFDTLKRLLVERPILALYDHLAETQLHTDASKFGLGGILMQKNGNNTWQPV
FT                 SYYSRQTSTDEQKLHSFELETLAVINSLNKFRTYLLGIKFTIVSDCNALRS
FT                 TFTKRDLIPRISRWWIQFLEYDCSIEYRPGEKMAHVDALSRGAIIDQQEPI
FT                 HVLDILNVSTDDWISTVQSADEEVRRIKEILQDPDTAKIAAIHKDYRVKNG
FT                 RVYKVIEDGALRWLVPRGVRWQVLKTNHDDVGHFGFEKTLQRIKSLFWFPK
FT                 MRKFIQKYVSACLECAHHKVPSGSKEGMLHPIPKVDVPLHTVHADHLGPFP
FT                 RSKHGNMYILVIVDSFTKYIYLSAVRSTKSKASIKVFKTYFSLFGCPLRLI
FT                 TDRGTSFTSKRFKTFVQSVGVKHILNSVATPRANGQVERYNRTILASLGSM
FT                 THGKNSDIWDTFLPDIQLGINTSIHDVTKRSPTELLFGRKLGNPSQGILNN
FT                 VSEEILISETNEPIEQIRSDASDRIKENQNKNKNRFDSHRKSPNKYKEGDL
FT                 VRVVRAIVSGSGKSKKLESKCQGPYRIKKVLPNDRFIIVDTPLTRKGKAYE
FT                 NVVAIDKIYPWMSFDAPSYSSSDESI"
XX
SQ   Sequence 6610 BP; 2157 A; 1213 C; 1385 G; 1854 T; 1 other;
     gctcagaagt gggataacag caaaaatata tatttttgct acgcccacaa gtcaacgtct        60
     aaggtatgta catgattttt tttccctcga tacgtgtaat gactatgtct tataattcaa       120
     aagggtatat ttagctgagg tgaataataa cgaatacaat tgcaaaatag atctattgca       180
     atattagttt aaaatttgat aaataacgcg tcgttagaca cgatgcgaca gctaggaaaa       240
     tggcgtatcc ttgtctacga agatatttat ttaaatgtca tcacaatgaa tactgaatat       300
     ctcgagctgt tattagtgtg cattgtaacg tatgtgcttt tataaaaatc gaaaaatctc       360
     atcaaatacc tacttttaaa tctgcaccaa taaaaagtca agccgcagaa ggccagctgt       420
     caaagttatt tttttttctt aatcgaaaca aaggcttttt agcaaatgca acatttttta       480
     tatatcgaaa ataaaatact gttactaaat agttctatga ctacttattt ttcatctcga       540
     ttattataga attgaaaata aaggccatga tctgagatgc gattggattg aattagtatc       600
     tctgcatttt tgctatcagt ttaaaaaaaa atatatatac ccgtaattga tagtagagcg       660
     cgtagaaaaa tactttacta cgcacaacaa caaggaactc aagatcctgg cgtgatgaac       720
     accgatttaa aataatttaa ccttcgaaaa cctcttgctc catttaaatt aattaaatct       780
     ctgaaagaaa tacaagaaat tcgtttcgag tttmagataa tggaacgagt tagccctgat       840
     gagaaacggt gtcgaagtcg tagacttcaa acacctatgc cacctcggag ccccatacta       900
     ccaacaatgg gagtcgaacg tgatgcgaag aacagcagtg gcatgcgacg gagccggagc       960
     cgcatgcggc acgaatgtgg cagtcaagtt cgaagccgaa gccggagcct tcaccgcacc      1020
     cagtgtgccc aacgcagcca ccacagtaac cgtgagttat cacatcagaa cctgaatatg      1080
     aaccgtaact cactcgagaa cagacctagt cgtaatcggg agatatgtga tggatatcag      1140
     caacgcagtc acagtcgcag tagacgtaga aacagccgtc gtagccgtag tcatgctcgc      1200
     agagaagtca atcgacgtag tcgcagtggt actcgtaaac ggaatgatga gaataatgag      1260
     ttgcgtgaga ggctattcct gttagagcaa gagttgaaga gacaacgtag ccgcaacgtg      1320
     atatctcatg atatagctga tagccaccga cggcagtttt ccccgtccag aatgatgcgt      1380
     agcccccttg gaagtgacac tgaaaaccca gtttccgaac ggccaagggt tgtagagcct      1440
     gctaagttcc ttgaagaatt tgttaaaatt tttaagggca gggatcgtga atcgtttccg      1500
     gtattgaata atgttctttc ggattttgac ccactttctc gagaacagac catagaaatg      1560
     tggataagta aagtggacga atgcgcggaa atctataatt ggaatgaccg tcaaacggtt      1620
     cactatgccc tgcccaagct tgtaggacat gctaagacct ggtaccaggg cttaccaact      1680
     attaggcatt cgtggaaaga gtggaaggtt ttactgagag aatctttccc gtctaccgag      1740
     aactatgctg aacttctgac cgaaatgctt aatagaaggg cgcgccctgg tgactcccta      1800
     gaattatact atttctccaa gataaactta ttaaatagat gtaaaatatt tggtaagcag      1860
     gcagtagatt gcttaatttt tggaattgaa gacaaaggca ttagattaag tgctcaagca      1920
     gggaagttta acaaacccga ggaaacttta gagtttttta agacagttaa gtctcatcct      1980
     agagagtaca gcgagggtat taggagagaa ggaaccagta aagataataa gcgctttcaa      2040
     agttttactg caacctcgac caactctgaa gcaactaaaa tcatagacaa aacttttaga      2100
     aatcgaccga aagggaatgc ggtttgcttc aactgtaagg aagttggtca tatgagttat      2160
     caatgtcgta aaccaataac caaatgctct gaatgtaatt ttttaggaca cgactcaaat      2220
     atttgcccta agaggtccaa taactctaat aatggtaacg tgtctagtaa aaatattaac      2280
     gataataaac cgaaaagtgt tcttgaagta tccataaatg atgatagcaa tgacaagtat      2340
     agagtaggca tcaaaataaa tggtgtagtt attgcttgtc aagttgatct aggtagccaa      2400
     gctactcttg tccgtaaggc cgatgctcat aaaattggtc ttcagtggga caccgtacag      2460
     ggcccattgt tgagaggatt aggcagtatt ccctatgtac ccgtaggtaa aacttttgtt      2520
     acaattgaga tccaggatat aagagaggaa caggtagagg ttttaatagt tgatgactca      2580
     cttataaata ttccagtgct cctcgggcac agttttacgg aacgacctaa tttaagaata      2640
     ataaagaccg ccactgattt acgatttgaa aaggttgatg taagtggtga agttaaactt      2700
     ctacttgtta cagttgatga ttttgaatta gatataggag gacttagagc agttacagtc      2760
     ggagctaaaa cgaattatag tggtagcatt tatgttggag gttcgataag aggtaaaccc      2820
     gacagggaat actatttatt gcctggtgaa taccaaatga ccaatggagt gtgccgcgta      2880
     ctaatacaga gcttaagttc taaaaaaatt aatttttgta aggatgcgtt ggtttcccgg      2940
     gctaggacga ccttttctca ggatcgactt ttagatgtgt tgcagataaa tacggagttg      3000
     gttaatgaat ctcatgttaa ttctatcaaa atgggagaga gacttactat tagtgaaaag      3060
     gataaatgtc aggctttatt atcgaagtat aagggttgct tttcgacagg gttgcatgac      3120
     ttaggttata catccgtggc tgaaatggaa attcatttaa ctgacacaac gcctgtcgtg      3180
     tacaagcctt accggctttc gcattcagaa cgtgcctatg ttcaaggttt ggtggaggaa      3240
     atggtagaac atggtatagt acgtgaatct agctcacctt atgcgagtcc aatcgtcctc      3300
     gttcaaaaga aatcgggtga aaagcggttg tgcgtggatt accgagccct caatcgacgc      3360
     acaaaaagag atcattatcc acttccgcga atagaggact tacttgacca actttcaggg      3420
     cagtcacttt tcacaacgct tgaccttgca tctggttatc atcagatagc cattgctgaa      3480
     gcttctaaag cgaagacagc atttgtcact cccgaagggc aatacgaata caatcgtatg      3540
     ccctttggac tggcaaatgc acctgccgtt tttcaacggg ttattcataa aatccttaat      3600
     aaaactaaag taccattcgt gatcatatac atggatgaca ttttaattcc atcgagatca      3660
     ttcgatgaag gcttacaacg cctcgatcaa gtccttgcct tattgctgga tgctgggtta      3720
     acactaaaaa tggaaaaatg ctatttcttc caagagaaaa tagtcttctt aggttttgaa      3780
     atcgataaac ttggtatcag acctggagaa caaaagaccc aagctgtgtc caagttccct      3840
     gtgccacgca atcaaagtga cgtcaggaga tttcttggcc tggccggatt tttccgcagg      3900
     tttgtcaagg attttgctct agtggcgaaa cctttgacaa acctgctaag aaaagatatt      3960
     gcttggcatt gggcggagtc acaggaaaac gcatttgata ctttgaagag actgctagta      4020
     gagagaccaa tcttagcact atatgatcac ttggccgaaa ctcaattaca tacagatgcg      4080
     agtaagttcg gcttgggagg cattctgatg caaaagaacg gaaataatac atggcaaccc      4140
     gtctcttatt atagccgtca aactagcact gatgaacaaa aactccactc cttcgaactg      4200
     gagacgctag cagtcattaa ctcattaaat aagttccgca cctacttatt gggtataaaa      4260
     tttaccatcg tgtctgactg caatgcgtta cgttcgacat ttaccaaacg agacctgatc      4320
     ccgcggatat cacggtggtg gatccaattt ctcgaatacg actgcagtat cgaatatcgt      4380
     ccaggtgaga aaatggctca tgttgatgct ttaagcagag gcgcaatcat agaccaacaa      4440
     gaaccaatac acgtgctgga cattttaaat gttagtaccg atgattggat ttcaacagtt      4500
     caatccgccg atgaagaagt taggcgtatc aaagaaatcc tacaggatcc tgacactgcc      4560
     aaaattgctg ctattcataa agattatcgg gtcaaaaatg gtcgcgttta taaggtaatc      4620
     gaagatggag cattaagatg gctcgtcccg agaggtgtgc gctggcaggt cctcaaaacc      4680
     aaccatgatg acgtaggtca ttttggtttc gagaagacct tgcaaaggat caagtcccta      4740
     ttctggttcc caaagatgcg gaaatttatt caaaaatatg tgtcagcgtg cttggagtgt      4800
     gcacaccata aggttccatc tggctctaaa gagggtatgt tacatccgat tccaaaagtg      4860
     gatgtaccac tacataccgt acacgctgat catctcggac catttccacg cagcaagcac      4920
     ggtaacatgt atattttagt gattgtggat tctttcacaa aatatatata tttatctgca      4980
     gtccgtagca caaaatcaaa agcaagtatt aaagttttta aaacgtattt tagtttattt      5040
     gggtgtccat tgcggctaat taccgatagg ggtactagct ttaccagtaa aagatttaaa      5100
     acctttgttc agtccgttgg ggtgaaacat atactcaact cagtcgcgac tccacgagct      5160
     aacggacaag ttgaacgata taatcgcacg attttggcct ctttgggaag tatgactcac      5220
     ggaaaaaaca gtgacatttg ggacaccttt cttcccgata tccaattagg cataaatacc      5280
     tcgatacatg acgtcacaaa aagatcacca actgaattgc tatttgggcg aaaattaggc      5340
     aacccgtcgc aaggtatttt gaataatgtc tctgaagaga ttttaatcag tgaaactaac      5400
     gaacccatag agcaaattag gtcagacgct agtgatcgca ttaaagaaaa ccaaaacaaa      5460
     aataagaatc gatttgatag tcatcggaaa tcaccaaaca aatataaaga gggagaccta      5520
     gtcagggtag taagagctat tgtttcgggt tcaggaaaat caaaaaaact agaatctaaa      5580
     tgccaagggc cttatcgaat caaaaaggtc ttacctaatg acaggtttat tatagtagac      5640
     acaccgctta cacggaaggg aaaagcatac gagaatgtgg tagcgattga taaaatttac      5700
     ccctggatga gctttgatgc accgtcatat tcttctagtg acgaaagtat ctagttaaca      5760
     taaagatcat tattttatta atttgtgaat gaataacacg gatcacttaa taatagattt      5820
     tgtcatatta taccaacaag atttggctat actcaacaat gttcccatag acatgtttag      5880
     ttttaaatca taatatttaa tttgttaata catagaagta tgattaattt ccttgtttga      5940
     tgttatacct ttctaatata taactttagc caatgttctt cttatatgac attattttac      6000
     tgcataggta atttaaaata ggtattttta atgaaactga ttatcttagt aagagaattt      6060
     aattgagtga accattgaat accgactgtg aaaatataca aacgaaatac tggctttaag      6120
     gaaacgtaag attcacaccc tgcacagagc ttcggttggt ttataccgag catgagtgta      6180
     ttaagaaaag tacaacttac cttaattgag agctttggca gattcgagcc tagcatgaga      6240
     attatttgat ctgttcagtg agggtgtttc ataccacaga gcttgattag atgcgagctg      6300
     gacatgagtg atatggccta gagggtcata gcacagagtt caagcagagt ctaaccacgc      6360
     atgagtgata tgacataaca cgcagtcaca aattgatggt gaaagacgtg aagtaacctc      6420
     tttttgttgg ctatatctaa gtataacagt agaatcaagt atatttgtct tgttcagtaa      6480
     aaaaaaaaaa atatttggaa ttgttaaata agattaaaaa ttacttaaaa gatgatttaa      6540
     aactaatgtt tgtttttaaa ataaatgtga ccttaaacga agggactcgt ttatgtgacg      6600
     gatggccgac                                                             6610
//
ID   Gypsy-15_SpEx-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4144-4144 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 299 BP; 94 A; 53 C; 38 G; 114 T; 0 other;
     tgtaacagtc attaatttta tcacttacca tattactaat tattaatatt attcacttca        60
     aacattaatc tattgaatag taatattcct taaaacccga attctaatgt tgaatcgatt       120
     cataaatcga ttcagttttt cgaacgttgc aacactgtcc cggtccgcca ttcagatttg       180
     aattcggaga tttttggaga ggtccgtcaa ttgtatttct gtagtataat taaatataat       240
     acttagtaaa agtttgtgtt ttatctcaag aaaccccatc cttctgagca tttttcaca        299
//
ID   Gypsy-15_SpFr-I repbase;    DNA;    INV; 4239 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4239
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1881-1881 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~85% identical to
CC   that of Gypsy-23_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..4147
FT                 /product="Gypsy-15_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTGTTYGVLTTFDHSSQEWNNFKLRLEQWFIANNIT
FT                 FETDKATIKRRAILLTSLCESTFKLACDLALPNKVEELGYEAIVKLLDNHF
FT                 TPKRFGFAEKSIFYAATQRQDETHTQWAARIRGLATHCAFKNLEEALLDRF
FT                 IMGMTPGRERDKLFMQDQRELTLAKAIDLAESVRCARLASSTAGAQATAAA
FT                 GAATAAADSVFNISKKEKCSVCGFTNHKSNQCRYKNFKCKKCNNKGHLRKM
FT                 CPNEGKVKYVEEGMLDCGDDGECFYNIRCLKGKPMTERVTVSGLALEFEID
FT                 SGSAVSVISKSTYNSNFKRLPLSVTKKRLFSYTGENIETIGVVALPISYLG
FT                 RTHTLDVYVVRADGPPLLGRDFIREFNLELAPAAATAAAEPTKARVHVVYQ
FT                 QTPCESDTSIGKELCKMFPKVFSGNLGAFNKYKIDLHLKPDAQPIFFKARP
FT                 VPYALRGKLDEELDRLLTLGILKPVEHSDYASPVVPVLKKNGSLRLCADYS
FT                 VTINKQLIIDQYPLPTVNDLLAKLHGGVQFSKIDLSMAYNQFILNEESQKL
FT                 TCINTHRGLFNFTRLVFGLSSAPAIFQRAMECLLSGIDGIIFLLDDILITG
FT                 SNRHEHKQRLTTVLQRLNDAGLTVQMSKCEFFKDEIAYLGHVIDKHGVRKS
FT                 PDKVKAILQAPKPTNIIQLQSFLGLTNYYRNFVPDASSILSPLYDLLNKNK
FT                 KWEWTHRHNDAFVRIKNILASDRTLAHFDPNAKLILTVDASPTGLGAVLSQ
FT                 IGPDRLERPISYASRTLSRAEKNYAQVQKEATAIVFGVKRFHQYLYGRSQP
FT                 FVLRTDHKPLLAIFGPYKGIPEISANRLQRYAIFLAAYNYVIEYISSKQNS
FT                 ADYLSRAYSGDNETETTDELTECEDRAAYVNFVTDGDLPVTLNDLRRETTR
FT                 DTNLSTVKDFVLNGWPRKVSDAELKPFFNCRTQLSYESGILMRGHKVVIPT
FT                 TLQENVCRELHSSHFGIVKMKAEARKRLWFPGVDAALERVAGACTVCAALR
FT                 PAPPHAPLAPWPLPPHPFYRIHLDFLGPFHNYMFLIIVDAYSKWVECYNMP
FT                 STHNSKTVISKMHDFMSRFGIPHTLVSDNGTSFTSLEFKEFCNLNGIKHLL
FT                 SPAYHPASNGQAESFVKIVKKGLKAIILQGCNKLTIHDKIAKYLFDYRNSK
FT                 NSTTDKSPAELVFGRSLRSRLDLLNPNAPSSSTSTDLTQTVARKQSLQAKH
FT                 FRGVLRPEFKENDLVWITKNTNNNKVNWLEGIITKKIGNLMYSVYVPQLNG
FT                 EVTRHMDQIRKRLSSPISSATGEDQDWDPDVIPDVASPATAHPEPATHREG
FT                 EGEATTVLEPAAATPPGTPETSPPLATPGTSPRAARPVTPHRRRAISPIFS
FT                 TPQSTLPLD"
XX
SQ   Sequence 4239 BP; 1236 A; 931 C; 1006 G; 1066 T; 0 other;
     gtggcgacga gcggatttta catttgaaaa tatgtccacg ggaacaactt atggcgttct        60
     tacgacgttt gatcactcat cacaagagtg gaacaacttt aagttgcgat tagaacaatg       120
     gtttatcgct aacaacatta ctttcgaaac cgacaaggca acaatcaagc gtcgggcgat       180
     acttttaacg tcattatgtg aatcaacgtt caaacttgca tgcgatttgg cgctaccgaa       240
     caaggtagaa gaattgggtt acgaggcgat cgtgaaactc ctcgacaacc attttactcc       300
     aaaaaggttc gggtttgcag agaagtcaat cttctatgca gcaacgcagc ggcaagacga       360
     aacgcacact caatgggccg ccaggattag aggtttggca actcactgcg cattcaagaa       420
     tttggaggaa gctctgctgg ataggttcat catgggcatg acaccgggac gtgagcgcga       480
     caagttgttc atgcaggatc agcgggagct gactcttgca aaagcgatcg acttggcgga       540
     aagcgtgcgt tgtgcacgcc tggcgtcgtc gacagcgggg gcgcaggcga ccgcggcggc       600
     cggtgcggcc acagcggccg cggatagcgt cttcaatatc tccaagaaag agaagtgcag       660
     tgtgtgtggt ttcaccaacc ataaatcaaa tcagtgtcgg tataaaaact tcaagtgtaa       720
     aaagtgcaat aataaaggtc atttgcgtaa aatgtgccct aacgagggaa aagtgaaata       780
     cgtggaggaa ggtatgttgg actgcgggga cgacggtgag tgtttttata atattcggtg       840
     cctaaaaggg aaacccatga cagagcgagt gacggtcagt ggtctagcct tagagttcga       900
     aattgatagc ggttcagcag ttagcgtaat ctctaaaagt acttacaact cgaattttaa       960
     gcggttgcca ttgtcagtca ccaaaaaacg actatttagt tatacagggg aaaacatcga      1020
     aactattgga gttgttgcgt tacctatatc atacctaggt cgcacacata cactggatgt      1080
     gtacgtagta cgcgcagacg ggcctccgct actgggccgc gactttattc gggaattcaa      1140
     tctcgagcta gcgccggcag cggctacggc ggcggcggag cccacgaagg cgcgcgtaca      1200
     cgtcgtgtat caacaaacac cttgcgagtc tgatacgagt atcggtaaag agctttgtaa      1260
     aatgtttcct aaggttttct caggcaatct cggggcgttt aataaataca aaattgattt      1320
     acatttaaaa cccgatgcac agccaatttt ttttaaggcg aggcctgttc catatgctct      1380
     cagggggaaa ctagacgagg agctcgaccg gttattaacg ttaggcattt tgaagcccgt      1440
     ggaacattca gactacgcgt cgcccgtggt accagtatta aaaaaaaacg gtagccttag      1500
     actatgtgcg gactactcag ttacaatcaa taaacagttg ataattgatc aatatccttt      1560
     accaacggtg aatgatttgt tggctaagct acacggaggc gtacaattta gtaaaataga      1620
     tttatctatg gcttataatc aatttatttt gaacgaagag tcgcaaaaac taacgtgtat      1680
     caatactcat cgcggtcttt ttaatttcac ccgattagtg ttcggattgt ctagcgcacc      1740
     agctattttc caacgcgcta tggaatgttt actttcggga atcgacggaa tcatctttct      1800
     attagacgat attctgataa cgggctcaaa tagacacgaa cacaaacaaa ggctcactac      1860
     agtcttacaa cgtttaaatg atgcagggtt aacagtacaa atgagtaaat gcgaattttt      1920
     taaagatgag attgcatacc ttggtcatgt catagataaa cacggagtca gaaaatcgcc      1980
     cgataaagtc aaagctattt tacaagctcc taagccaaca aatataattc agttacagtc      2040
     gtttttgggt ctaacaaatt attaccggaa cttcgtgccg gacgcgtcat ctatattaag      2100
     tccattatat gatctgttaa ataaaaataa aaagtgggaa tggactcata ggcacaatga      2160
     cgcgtttgtc cgaataaaaa acattttagc gtccgataga actttggcac attttgaccc      2220
     gaatgctaaa ttaatattaa cggtagacgc ctcaccgacc gggctaggtg cagtactatc      2280
     gcaaataggt ccagatagat tggagcggcc tatttcgtac gcttcccgaa cgctctcgcg      2340
     ggcggaaaaa aactacgcac aggtccaaaa ggaggcaact gcaatcgttt ttggggttaa      2400
     acgtttccat cagtacttgt atggccgttc tcagccgttt gtccttagaa ctgaccataa      2460
     acccctgttg gctatatttg gcccttataa aggtattccc gagatatccg caaatcgcct      2520
     acaaagatac gccatatttt tagccgcgta taattacgtg attgaatata ttagtagtaa      2580
     acaaaatagt gcggattatt tatctcgcgc gtacagcggc gacaatgaga cggaaacaac      2640
     ggacgagctc acggaatgcg aggatcgcgc ggcttacgtg aatttcgtaa cggacggcga      2700
     tctgcctgtc acgttaaacg atttgcgccg ggaaacgact cgcgacacta acctgagtac      2760
     tgtaaaggat tttgtgttaa acggttggcc taggaaggtt agtgacgccg agttaaaacc      2820
     atttttcaat tgtcgaactc agttatctta cgaaagcggt atattaatgc ggggacataa      2880
     agtagttatt cctacaactt tgcaagaaaa tgtttgcagg gaattgcata gttcgcattt      2940
     cggcatcgta aagatgaagg cagaggctcg caaacggtta tggttccccg gcgtggacgc      3000
     tgcgctggaa cgagtggcgg gcgcctgcac ggtgtgcgcg gcattgcggc ccgcgccgcc      3060
     acacgcccct cttgcacctt ggccgctgcc accgcatccg ttttaccgaa ttcatttaga      3120
     tttcttgggt ccatttcata attacatgtt tttaattatc gtggatgctt acagtaaatg      3180
     ggtcgagtgt tataacatgc cttcaactca taattcaaag acagttataa gtaaaatgca      3240
     cgattttatg tcacggtttg gtattccaca tactttggtg agtgacaatg gtacgtcgtt      3300
     tacatcattg gaattcaaag agttctgtaa ccttaacggt atcaaacact tgttatcgcc      3360
     ggcttatcac ccggctagta acgggcaggc cgaaagtttt gtcaaaattg taaaaaaggg      3420
     gctgaaggca ataattttac agggttgtaa caaattaaca atacatgata aaattgcgaa      3480
     atatttattc gattacagga actctaaaaa tagtaccact gacaagtcac ccgcggagtt      3540
     agtgtttggg cgttcgctgc gctcacggct agatttattg aaccctaacg caccgtcgtc      3600
     atcgacgtcc acagatctaa ctcaaaccgt cgcgcgtaaa cagtccttac aggctaaaca      3660
     cttccgtggt gtactaagac cagaatttaa agagaacgac cttgtctgga taactaaaaa      3720
     cactaacaat aacaaagtga attggctgga gggtataatc acaaagaaga tcggaaatct      3780
     tatgtacagc gtatacgtgc cacaattaaa tggtgaggtc actagacaca tggaccaaat      3840
     aaggaaaaga ctgtcttcgc caatatcatc ggcaactggt gaagaccagg actgggatcc      3900
     tgacgtgatt ccggatgtgg cgtcgcctgc taccgctcac cccgaacctg ccacacatcg      3960
     agagggggaa ggagaggcga caacggttct ggaaccagct gcggcgacgc cgccgggcac      4020
     gccagagact tcaccgccat tagccacgcc ggggacctca ccacgcgccg cccggcccgt      4080
     tacgccccac aggcgaagag caattagccc aatcttttcg actcctcagt cgaccttacc      4140
     attagattga ttaaatagat taacccctta ctgcataccc agccacagta ggtagatatt      4200
     agttagtata agtatattcc ccatcttagg ggggagaga                             4239
//
ID   Gypsy-15_SpFr-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-186
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1869-1869 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 186 BP; 42 A; 44 C; 41 G; 59 T; 0 other;
     tgttatattg gtattcctgt cgcgcatgcg cgcttggtat tactgcgcgc ccttatgttg        60
     gcattactgc gcgggctgcg tcccgcgcat tctattcgat tttaaaaata ttaaagcagt       120
     gtgcaacaaa ctagcgagtt tgattgacga atgtcatttc ccgatttccc gcgcaaatac       180
     ttaaca                                                                  186
//
ID   Gypsy-15_TrNi-I repbase;    DNA;    INV; 3975 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-3975
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 219-219 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..891
FT                 /product="Gypsy-15_TrNi-I_1p"
FT                 /translation="MGEFDDALTGQEKEVSAISLQAKIPKFWRAQPRLWFA
FT                 QFEAVISPYKTSDERKYNLVVAVLERQDIEQVSDIICKPPESGRYNALKSR
FT                 LLSVYEESESRQFQKLLSGLELGDQKPSQLLRVMRELAGEKVQDNALKILW
FT                 MGHLPSQVRAVLSVNTESALDTQALMADKMMEHTEHTIAEVNQSVCAPTPS
FT                 TSTGPDLQFQVLTKQLEKLTLEIAALRKENVNHRRPFRRDHSRPRSQSRTR
FT                 TGPGKKPGDPTWECYYHHRFGHKAKKCEPPCARRPSEN"
FT   CDS           861..3962
FT                 /product="Gypsy-15_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TTMCKEAVGKLKTTSAMVGVGVPKINNRLCITDRNSR
FT                 ERFLVDTGADLSVLAVKTKRTPINTQFKLFAANNTPINTYGMKTLQLNLGL
FT                 RRNYKWTFIMADVKTSILGADFLKYHRLLVDLHRKKLVDSLTELSVDTMTM
FT                 NTTQDTTLYVVEPSHRYHALLQEFTDILKPMSPMKEIKHNVKHHIKTTGPP
FT                 LFARPRSLPPIKYNAAKAEFEAMMSMGICQPSKSPWASPMHVVTKKDGTLR
FT                 ICGDYRRLNSVTLPDRYPIPRLQEFTYQLHGMKLFSKIDLKTAFFWIPISE
FT                 NDVEKTAITTPFGLFEFRNMPFGLRNAPQTFQRFMHEVLRGLDYCCYCFID
FT                 DVLLYSKTPQEHEDHLRLVLKRLSDYGIGINLEKCMFGQKKLNFLGYEVTE
FT                 DGITPTAERIQIILNYPKPANVQDLRRFLGMVNFYHDCLPKQAEKQIELNK
FT                 LLHNKKKNDKTPITWNQKLEDAFDNCRQSISKAAQLSHPVQGTPLCIMTDA
FT                 SDLSVGAVLQQKINHTWKPLSFFSKKLSDTQSRYSVYDRELLAVYMAVKHF
FT                 RRLIEGNDVVVYTDHKPLTYAMTKSPSASDTPKRERQLHFISQFCSKIEYI
FT                 HGKDNVVADALSRITAIDCPCVIDFNNLADEQIKDEDLISLLKQQNLHFIK
FT                 ISLPGVKKQIYCENSTKSPRPYLPKSFREIAFKALHEMSHPGIRTTRKIIT
FT                 EKYFWPAMNRDVSEWTRCCITCQRAKVHRHTKTPLVQFPESRRFEHIHVDI
FT                 VGPLAPSEGYRYLVTIIDRCTRWPEAVPVSDITAETVARVIYDTWITRFGC
FT                 PLRISTDQGRQFESSLFQKLMNKLGVSRIRTTAYHPQSNGLVERFHRTLKT
FT                 ALIARGNKQQWVQELSTVLFGLRTVVHKETNYSPATMIYGTSLRLPADVFT
FT                 PAKIDKEDPLLIRHLTESMAMLNESCARAPARQQRTTFIPKQLETCTHVFM
FT                 RVDGGKKSLSPPYEGPYEVVEKHDKFYKIRLPNREAVVSLDRLKPAYVLPA
FT                 ATEEEVKENQYVTRSGRTVKPTKFVRFS"
XX
SQ   Sequence 3975 BP; 1279 A; 922 C; 843 G; 931 T; 0 other;
     tctggtgacc ccgacgtgat cattaattag taccgtcgca ttatttaatt agtcatgggt        60
     gaatttgacg acgctctaac aggacaagag aaagaagttt ccgccatttc gctgcaagcg       120
     aagatcccga aattctggcg agcacaaccc aggctgtggt ttgctcagtt cgaagcagtg       180
     atatcaccat acaagaccag cgatgaacga aaatacaact tggtggttgc agtattggag       240
     aggcaagaca tcgaacaagt tagtgatata atctgtaaac caccagagtc aggaagatac       300
     aacgcattga aaagtcgttt gctatcagtg tacgaagagt ccgagtcccg tcaattccag       360
     aagcttttga gcggactaga gttaggagat cagaagccta gtcaactcct gagggtgatg       420
     cgagagctgg ctggagaaaa ggtacaagat aacgccctca aaatattatg gatgggtcac       480
     ttaccttccc aagttcgtgc cgtactatcc gtgaacacgg aatctgcatt agatacccaa       540
     gcgttgatgg cggataaaat gatggagcac acggaacata cgatcgcaga ggtcaaccaa       600
     tctgtatgtg cacctactcc aagtaccagt actggtccag acttgcagtt ccaagtttta       660
     acaaaacaac ttgaaaagct gactcttgaa attgccgcac tgaggaagga gaatgtgaac       720
     caccgacgcc catttcgcag agaccacagc cgtccgaggt cccagtcccg cacccgaact       780
     ggaccaggaa agaaaccagg agatccaacc tgggaatgtt actatcacca tcggttcgga       840
     cacaaggcaa aaaagtgtga accaccatgt gcaaggaggc cgtcggaaaa ctgaaaacca       900
     catcggctat ggtgggtgtc ggtgtgccga aaattaacaa ccgcctatgt ataacagacc       960
     gcaactcaag agaacgattt ttggtggata ctggtgcaga cttatcggtt ctagctgtaa      1020
     aaactaagcg aacaccgata aatacacagt ttaaattatt cgccgcaaac aatacaccta      1080
     ttaatacata tggaatgaag acattacaat taaatcttgg acttcgacgc aactacaagt      1140
     ggacttttat tatggcagat gtgaagacgt caattcttgg tgctgatttt ctcaagtacc      1200
     acagacttct ggtggaccta cacaggaaaa agctcgtaga cagtctgacc gaactttcag      1260
     tagacacgat gaccatgaac actacgcaag atactacact gtacgtagtt gaaccaagtc      1320
     atcgttatca tgcacttcta caagaattta ctgacatctt gaaacctatg tcgcctatga      1380
     aagaaatcaa gcataatgtg aagcaccata ttaagaccac cggccctcca ctcttcgcaa      1440
     gacctcgctc actgccgccg ataaagtaca atgcagcaaa agccgagttt gaagcaatga      1500
     tgtcaatggg aatatgtcaa ccatcaaaaa gtccgtgggc cagtcccatg cacgtggtaa      1560
     caaaaaagga tggaactctt cgcatatgtg gtgattaccg tcgcctaaat tcagtaacac      1620
     ttccagaccg ctacccaata ccgaggctgc aggaattcac ttaccaatta catggcatga      1680
     agttattttc gaagatagat ctgaagacag cattcttctg gattccaatt tctgaaaatg      1740
     acgtagagaa gacagcaata acgacacctt tcggactatt tgagtttcgt aatatgccat      1800
     ttggtctgcg taacgcgcca cagacatttc aacgatttat gcatgaagtc ttgagaggcc      1860
     tagattactg ctgctactgc tttatcgatg acgtgcttct gtactcaaaa acaccacagg      1920
     agcatgaaga ccacttgcga cttgttttga aacgtctgtc tgactacgga atcggtatca      1980
     acctagagaa gtgtatgttt ggtcaaaaga agctaaactt cctgggctac gaggttacag      2040
     aagatggcat cacgcctact gctgagcgca ttcaaataat cctaaactac ccgaaaccag      2100
     cgaatgttca agatctccga cgttttctcg gaatggtaaa tttttaccac gactgtttac      2160
     ctaagcaagc cgaaaaacaa atagaactga ataaactact tcacaataaa aagaagaatg      2220
     acaagacgcc tatcacctgg aaccagaagt tagaagacgc tttcgataac tgccgtcaaa      2280
     gcatatcgaa agcagcacaa ttaagtcatc ctgtccaagg taccccatta tgcatcatga      2340
     cagacgcctc ggacttgagt gttggagcag tcctgcaaca gaaaataaac cacacatgga      2400
     agccgttatc ttttttctcg aagaagctca gtgacacgca atcaagatac agcgtatacg      2460
     atcgcgaact attagctgtc tatatggctg tcaaacattt tagaagactg attgaaggaa      2520
     acgatgttgt ggtgtacacg gaccataaac cccttactta cgccatgacc aaatcaccaa      2580
     gcgcaagcga cacaccaaaa cgggaacggc aacttcattt tataagccaa ttctgcagca      2640
     agattgagta catacacgga aaagacaacg tggttgccga cgcactatct cgtataactg      2700
     ccatcgactg tccttgcgtt atcgatttca ataatctggc cgacgaacaa ataaaagacg      2760
     aagatttaat ttccttgttg aagcaacaaa atcttcactt catcaagata tccctgcctg      2820
     gcgtaaagaa acaaatctac tgcgaaaatt caacaaagtc accacgtcct tatttaccga      2880
     aatcttttcg tgagattgcc ttcaaagcac tccatgaaat gagtcatccc ggtatccgga      2940
     caactagaaa aataattact gagaagtatt tttggccggc aatgaataga gacgtatctg      3000
     aatggacacg atgctgcatt acatgtcaac gtgctaaagt tcaccggcac acgaaaacac      3060
     cgcttgtaca gttccccgag tcgaggaggt ttgagcatat acatgtcgac attgttggac      3120
     ccctcgcccc atcagaagga taccgatact tggtcacaat cattgatcga tgcacaagat      3180
     ggccagaagc agtgccagtc agcgacataa ccgcggagac cgtcgcccga gtcatatatg      3240
     atacatggat tactcgcttc ggttgcccac tgcgtatttc aacggaccaa ggtcgacagt      3300
     tcgagtcatc attatttcaa aaactaatga ataaactcgg tgtatcaaga atccgcacaa      3360
     cagcctacca tcctcaatca aacgggctcg tcgaaagatt tcatcgtacg ctcaaaacag      3420
     cattaatagc cagaggaaat aaacaacaat gggtacaaga attatctacc gtattatttg      3480
     gattacgtac ggtggtccat aaagaaacaa actacagtcc cgctacgatg atttatggca      3540
     cctcattaag attaccggca gatgttttca cacctgcgaa gatagataag gaagacccgt      3600
     tattgatacg tcacttaacg gaatcaatgg caatgcttaa tgagtcatgc gctcgtgcac      3660
     ccgctcgaca acaacgcacg acattcatac cgaaacaact ggaaacatgc actcatgtat      3720
     ttatgcgggt agatggtgga aaaaaatcat tatcaccgcc gtatgaaggc ccgtacgaag      3780
     ttgttgagaa acatgacaag ttctataaga ttcgcttgcc caaccgagaa gcggtggtat      3840
     cattggatcg attgaagcct gcctacgtac tgccagcagc cacagaagaa gaagtgaaag      3900
     aaaaccaata tgttacccgt tccggcagaa ctgttaaacc tacaaaattt gtacggtttt      3960
     cttgaggggg gatac                                                       3975
//
ID   Gypsy-15_TrNi-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-352
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 173-173 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 352 BP; 90 A; 93 C; 86 G; 83 T; 0 other;
     tgtgggagtc cgtcatacaa caccgatcat aacgaccgct ccgcgcggcg cgcggacgga        60
     cactgaacgc tgccggcccg aacggccgta tttatacctc gagttctcgg cgacgcgtca       120
     tcaacggaca tactcctgcg tcgatcgcct tcaactaact gagcggccga tgcagcgcaa       180
     ctagttttta ttaagcgtgc cgaaccctga ttggctgcac acgttgtgga catatcgaca       240
     gccaatggga tgttagagac tcttaggatg ttggtataaa tattggtttc gaaataaatt       300
     tcacagcatt ctcaaactgg agttttactg agcaacacaa gtagtaccca ta               352
//
ID   Gypsy-15_TrVa-I repbase;    DNA;    INV; 4926 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4926
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 260-260 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           253..4806
FT                 /product="Gypsy-15_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDNDQFKTFMESFTSILSRAMQNQPAAGNSEVGNGNV
FT                 PIILNFEHFNKSTEKFSQYTERFENFISMKGLSTTTDATMVKKLFLNNVGS
FT                 EIYEILSAISAPKSINELSYQEIIDLLTKYLSPAPNVLIEQHRFLCRLQND
FT                 NESIGEYVAALRRFLSTCDFNCTSCHSSIADQFLRAQFIRGLRNSSIREKL
FT                 LSDKAITFQDAVDKALALQSSFVDSQEIKRAISVNHTDVHKLSKSHASRTS
FT                 TSRSPSFHKSSASISRSQSNSSHHSSKSFARNRSNSPHNHSRSKNKSRIDY
FT                 NRLGIADLCFRCGRNDHKYQECKVNRSSVNCNSCGKLGHVSKVCITTLLSS
FT                 NNKVHIVDLYSTVDSDSIANFDSCMDLSYITSPESIELPLHNLIDSDKYYC
FT                 TVLIENKPVKFEVDSGCGFTLLPISICNQIGIHDLSPTFIRFRTYDSGIVK
FT                 PLGMKKVAVTYNNVTSKETLYIVPSHFTAILGRSWIRHLNLVLNELDQKVC
FT                 NLSPENSKNEHISESQLVEMFPSIFQQTVGKIPTVKGCLELRAGAKPRFRK
FT                 ARDPPYAIRDLIDKELDVLEKEDIITSIENSDWGSPLVPIIKDNGKIRLCV
FT                 DYKGTVNPQIVDVHHPIPKIDELLTELRQSRYYCKIDLFKAYLHLDMDEDS
FT                 RKIQTISTHKGTYTFNRLSFGIKPGPGLWNKHLQSLLFGLKGVTVYFDDIL
FT                 VHGPTLAECQQNLLALFKRLQELNLHVNRSKCIFFVTKISYVGYIIEGRKI
FT                 WKDPSKVRAIMEAAPPTDVTGVKQLLGLITYYSRFIPNASEITFPIRNLLR
FT                 KNVRFYWSPECDTAFKTLKSILASEKVLIAFDPDLPLSVATDASPHGISAI
FT                 LSHTIDDVERPIMCVSRSLTQAEKNYSQIDREALAIVFALDRFFMYVYGRK
FT                 FTLITDNKALTHIFHQHAALPPMTAARLLRYAAYLANFNYEIKHRPASDHA
FT                 NVDYFSRFSIPDVDEIGIQELLCHEVTSNQEQTLYQISSPVVTSEIIEAET
FT                 MKDPVLADIISKLRQDSSDKNALEFTLKDNILFKGNRVYIPASLRSIILSE
FT                 LHSTHSGMTKMKQLARRYCYWPSIDSEIDRLVRSCNSCALTQKTPQKAPLH
FT                 QWEVPPQNFDRVHIDYAGPVNGISFLILVDAKSKWPEIKVVSKAPTSESTA
FT                 ELLEDIFSNHGYPKMLVSDNAKIFSSEFFSNYCKARGIFQCFSAPNHPATN
FT                 GLAERYVQILKSKLLKMSEEPGDIRTKVQKILFQFRATPLADNLSPAELYL
FT                 NRKMRLRLDAIFPFKPSKNVNVTLGKIRVFSVGQKVLARAYKDKTHKWQQG
FT                 IVQKKLGRLHYLIKLDNNYVLKRHINQLRASFQESNDPAEIEENVPESNVS
FT                 LPTNVNLRKQVTFAQQPTVFEYALYQSPQGTSRSSPVTIPPQYEPHQSSQD
FT                 SLKSPQSPPVSVAKIPVITLSPDQPSTSSLPKASVVPCVSSSVGIVPKTSS
FT                 SSSQAAPKRPSLGRGRGNLPSSVSSHPSSNVSGNSSTSRERRPPLRLKDYV
FT                 PK"
XX
SQ   Sequence 4926 BP; 1570 A; 1043 C; 841 G; 1472 T; 0 other;
     attggcgacg aggtgtaagt aaaatcgttc gttcgttcgt atcgtctcgg aaattaaatt        60
     caatcgggaa tattccaaaa tgaaatcgct aacccgggta acctcaatcg tgaatcgcga       120
     tcgcgcagca cttcttatca atacacgtgt ctcccttctc agaatcgtca cagcataaga       180
     gaaagaaatc ctgatcgcct tcagaattct ttttaaattc gtcacactga agaaaatctt       240
     acaaccaaca aaatggacaa cgaccaattc aaaactttca tggaatcctt caccagcatt       300
     ctttctcgag ccatgcagaa tcagcctgct gccggtaact cagaagtcgg taatggtaat       360
     gtaccaatca tcttaaattt tgaacatttc aacaagtcca ctgaaaaatt ttctcaatat       420
     actgaaagat tcgaaaattt catttctatg aaaggtttat ctacgaccac cgacgctacc       480
     atggtcaaga aattgtttct caacaacgtt ggaagtgaaa tttatgaaat cctctcagca       540
     atctcagctc caaaatcaat caatgaactt tcctatcaag aaataattga tctattaact       600
     aaatatctca gtcctgctcc caatgtgtta atagaacagc accgtttcct gtgcagactt       660
     caaaatgata atgaatcgat tggagaatat gtcgcagccc tccgtagatt tctatcgact       720
     tgtgatttta actgtacaag ttgtcacagt tctatcgctg accagttttt aagagctcag       780
     ttcataagag gattgcgaaa ttcttctata cgtgaaaaat tactcagtga taaagcaata       840
     acgttccagg atgcagtaga taaagctctt gctctccagt catcgtttgt cgatagccaa       900
     gaaattaaac gtgccattag tgtaaatcat acggatgttc ataaactttc gaaatctcac       960
     gcttccagaa cttcaacttc caggtctccg tcatttcaca aatcatcagc aagcatttca      1020
     agatctcagt ccaactccag tcatcacagt tccaaatcct ttgctcgaaa tcgcagtaat      1080
     tctccgcaca atcactcacg cagtaaaaat aaatcaagaa ttgactacaa cagattagga      1140
     attgcagatc tttgtttcag atgtgggcgt aatgaccaca aataccaaga gtgtaaggtg      1200
     aatcgttcat ctgtaaactg caactcctgt ggtaagttag gccatgtgtc taaagtctgc      1260
     attacaacac ttctcagttc aaataacaaa gtgcacattg ttgatttgta ttctactgtc      1320
     gattctgatt ccatagcaaa ttttgattcc tgtatggatt tatcttatat tactagcccg      1380
     gaatccattg aattaccctt gcataactta atagattctg ataaatatta ttgtactgtc      1440
     ctgatcgaaa ataagccagt gaaatttgag gttgactctg gatgtgggtt cacactcctt      1500
     ccaatctcta tttgcaacca aattggtatt catgatttgt ctccaacctt catcagattt      1560
     cgaacttatg attcaggtat cgtcaagcct ctcggtatga aaaaagtcgc tgtcacttat      1620
     aacaatgtca catcgaaaga aacattatat attgtcccat cgcacttcac tgctatttta      1680
     ggaaggtcat ggatccgcca tttaaacctt gttctaaatg aattggacca aaaagtctgt      1740
     aatttgtctc cagaaaattc aaaaaatgaa cacatctcag aaagtcaatt agtagaaatg      1800
     ttcccttcta tttttcagca aacggtagga aaaattccaa ctgttaaagg ttgtttagaa      1860
     cttagagccg gagctaaacc aaggttccga aaagctcgag atcctccgta tgcaattcga      1920
     gatttaatcg ataaagaatt agatgtttta gaaaaagaag acattattac gtccatcgaa      1980
     aatagtgatt ggggttctcc attagtacca attataaagg ataatggaaa aatacgtctc      2040
     tgcgttgatt ataaaggaac tgtaaatccg caaatagttg atgttcatca ccctattcct      2100
     aaaattgatg aattactaac cgaactccgt caatccagat attattgtaa aattgactta      2160
     tttaaagctt atctccacct tgatatggat gaagattctc ggaagattca aacaatttca      2220
     acccacaagg gtacttatac attcaataga ttgagttttg gtatcaaacc aggaccaggt      2280
     ctgtggaata aacatttaca atcactgctt tttggattaa aaggagtaac tgtttatttt      2340
     gacgacatat tggttcatgg acctaccctt gcggaatgtc aacaaaacct tttagcactc      2400
     ttcaagcgcc ttcaagaact taatttacat gtcaaccgct caaaatgtat cttctttgtc      2460
     acgaaaatta gctatgttgg ttatatcatc gagggacgta aaatctggaa agatccgtca      2520
     aaagtcagag caataatgga agcagcacct cccacagatg tcacaggtgt gaaacaattg      2580
     ttagggctca taacctatta ttcaaggttc atccctaatg cctcagaaat cacatttccc      2640
     attcgaaatt tattgagaaa aaacgttcgt ttctattggt caccagaatg cgatactgca      2700
     ttcaaaacat tgaaatctat attagcaagt gaaaaagttc tcatagcatt tgatcctgat      2760
     ttgccactgt ctgttgctac cgatgcaagc cctcatggta tctcagctat tttgtctcat      2820
     acaattgatg atgtagaaag gccaatcatg tgtgtgtcgc gttccttgac tcaagccgag      2880
     aaaaattata gccagatcga ccgcgaagca ctcgcaatcg ttttcgcact tgatcgcttt      2940
     tttatgtatg tttatggcag gaaatttact ctaatcaccg acaacaaggc gttaactcac      3000
     atattccatc agcatgctgc attaccgcct atgacagcag caagattgtt gcgttacgct      3060
     gcatatttag caaattttaa ttatgaaatt aaacatcgcc cagcaagtga tcatgcaaat      3120
     gttgattatt tttcaagatt ctcaattcca gatgttgacg aaataggaat ccaagaattg      3180
     ttatgtcacg aagtaacgtc aaatcaagaa caaaccctgt accagatctc cagcccagtt      3240
     gtcacaagtg aaatcattga agcggaaact atgaaagacc ctgtgctagc cgacataatc      3300
     tctaaactcc gtcaagactc atctgacaaa aatgccctag aattcactct gaaagacaat      3360
     attctattca aaggtaatcg tgtatacatc cctgcttctc tccgttctat tatattgtca      3420
     gaacttcatt caactcactc aggaatgaca aaaatgaagc aactggcccg aaggtactgt      3480
     tactggccat caattgactc agaaatagac cgtcttgtcc gttcctgcaa cagctgtgcg      3540
     cttacccaga agacacctca gaaagcaccg ttgcaccagt gggaagttcc gcctcagaac      3600
     tttgatcgag ttcacattga ttatgcgggg ccagtcaatg gtatttcttt tctaattttg      3660
     gtagacgcaa aatctaaatg gccagaaatc aaagtagttt caaaagcgcc aacctctgaa      3720
     tccactgcag aacttcttga agatattttt tcaaatcacg gttatcctaa aatgcttgtg      3780
     tctgacaacg ccaaaatatt ctcaagtgaa tttttttcca attactgtaa agctcgagga      3840
     atatttcaat gtttcagtgc tccgaatcat cctgctacca atggattagc ggaaagatac      3900
     gtacaaattt taaaaagtaa acttttgaaa atgtctgaag aaccaggtga tattcgaacc      3960
     aaagttcaga agattctttt ccaatttaga gccactcctc tcgctgacaa tcttagtcca      4020
     gcggaattat atttgaaccg aaaaatgagg ctacgccttg atgcaatttt tcctttcaaa      4080
     ccatctaaga atgtgaatgt caccttagga aaaattcgcg ttttctctgt cggtcaaaaa      4140
     gttcttgctc gtgcctacaa agataaaact cacaagtggc aacagggaat cgtccaaaag      4200
     aagctaggac gtctgcatta tttaattaaa cttgacaaca attatgtcct aaaacgtcat      4260
     ataaatcagt tacgagccag ttttcaagaa tccaatgatc ctgcagaaat tgaagaaaat      4320
     gttcctgaat caaatgtgtc tttgccaacc aatgtcaatc ttaggaaaca agttactttt      4380
     gcccagcagc caactgtttt tgaatatgcc ctgtatcaaa gtcctcaagg aaccagtaga      4440
     tcttcaccag ttaccattcc accgcaatat gaacctcatc agtctagtca agatagtctc      4500
     aaaagtcctc aatctccacc agtaagcgta gcaaaaattc ctgtgattac tttgtctccg      4560
     gatcaaccat ctacctcatc tctaccaaag gcgtcagttg ttccatgtgt ctcctcttcc      4620
     gtgggaattg tgccgaaaac atcaagttcg tcgagccaag cagcacctaa gcgcccttct      4680
     cttggtaggg gtcgagggaa tttgccttct agtgtttcaa gtcatccaag ttcaaatgta      4740
     tcgggtaact catctacttc tagagaacga agacctccat tacgtttgaa agattatgtt      4800
     cctaaataaa ctttatgaaa gaaattttat atataaaaaa agaaaagtga ttttttttgt      4860
     tatttattat tataatttta ttttttctag tcttattctg ttgaattttt ttctagcggg      4920
     ggagag                                                                 4926
//
ID   Gypsy-15_TrVa-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-15_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 319-319 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 49 A; 54 C; 36 G; 78 T; 0 other;
     tgtagtaata ttagttccag tattagtcgc cagatggcgt gagctctccg gtatgtcagg        60
     ccgggagcct tccctgctct tgttacttag cttataagaa ctcttattgt atcaatagac       120
     gagatcatat cattatccgc gcctctctct cttttcatta tcgttcctcc tattctcaat       180
     tctcctaata agtatggatc gtccattttc cataaca                                217
//
ID   Gypsy-16-I_NVi repbase;    DNA;    INV; 8209 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-16-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8209
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 769-769 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1206..2474,2419..3039)
FT                 /product="Gypsy-16-I_NVi_1p"
FT                 /translation="MAKKVEKVVENWCLGIDEEEMDDALESMQLKPDGKRL
FT                 DRVARLNRWLLGEYTESDFRESLDASTVMARVKREELRKSFIDATAEQVST
FT                 RSIYTGDYDAEQPHPLKLLQQEIEANEVVVTPAIEMNYGQPAQGLGQPTGP
FT                 NLQLLNAMTMRDAFAEMPVTEESEQAQAPVSTPEDQARLTAQEAQGRDQNR
FT                 IVTIEVPTGNLVTTVTTTTTTTTTTTTTTTPTTTASEGKGEYVLQNGKFRS
FT                 VKVTAPRAVMGAAAVTGGLDTRSQQSAATTSNRPLNRGYGEDERCSAQYAQ
FT                 SHEVSAQNSVAQNDLLSQSIAENTATMRALMCKMEAMMSQWPTNIASSTRV
FT                 EPPASESNPQNSRRAGHVNFQDTYSINHMNHSSFREDAGAVAGGASNSWIP
FT                 ANPLYSQPPVVARGGGGCECDERAYASAELLGGGGDANATNAHTQALSDSS
FT                 NYDGSRRQNNRPIGPAVNKWGIKFTGDSSQSVENFLQRMEGRRMLDDLSDA
FT                 QMLASLQEVLTDNAYEWLQNRLSEQGEWSSWDDFCECIKRWYGQTQGYQQK
FT                 LLSEVISRTQGPGERVRVYVNNLQGIMRRMVPRPDASQQLDRIYHNMLPSL
FT                 KRGLQRKDFTTVEQLLEAAVEVEAALACEAW*"
FT   CDS           join(3508..4725,4649..7120,7069..8052)
FT                 /product="Gypsy-16-I_NVi_2p"
FT                 /translation="MVALLSSESRQPTISPNEDESRWWVQVGIGGFRVRAL
FT                 YDPGAAMTVMGSLGLQIASACGRPLRQRDGRQAQCANGQTSPIVGFVDLPF
FT                 DVAGVQRDVTVAIMPEATNECLVGTNFGRLFGAVHDPNENVLYLKKERKIV
FT                 QLQVATIATAGAIDIAAVGLAYVSDDEHAQIRRMLDSILPKSNRTIGRTQL
FT                 IEHGIDVGSARPIKQKYYPVSPKIEEEMYQQVRELLAAGIIEPSDSAWSSP
FT                 VVMVRKANGQYRFCVDFRKVNALSKADAYPLPNMDDILRKLQKAKYISTLD
FT                 LSSAYHQIPLKPEARPLTAFTVPGLGLFQFTRMPFGLAYAGATFQRMIDEV
FT                 ISPELQPYAYSYLDDIIIATETFEEHLEYLEKVLQRVNAAWIDDQPGQKCL
FT                 LPRRGEVPRRPGTRRGLTINRDKSVFCREEVKYLGVLVNHDGFRPDPEKIA
FT                 PIVAYPAPKNLKQLRRFLGMASWYRKFLQEFATVAEPLHRLTKKGRKYEWG
FT                 TEQQDAFQQVKALIASAPILHRPDFESQFVLQTDASDTGLGAVLFQVINGE
FT                 ERVLEFASRTMSKAERNYSVTERECLAVIWAIRKFRPYIEGYQFKVVTDHS
FT                 SLRWLCNLHNPTGRLARWALEMQGHVYTVEHRKGLLNAVPDALSRMYEEDA
FT                 VPVEAVGWASETQDEWYCEKVREIQLHPSKDPLYKMYGGQLYYFCPDEKLP
FT                 ASMNDDTAWKIVVPKEKRAEILRECHDEPSAGHQGREKTCARVAMYYYWPG
FT                 MYTDVAEYVRRCFVCQQCKVEQRSPSGLMGKRVITRPWQIIAGDVMGPKPK
FT                 TARGNEYILIFEDLFTRWIECIPIKRANAKTILQHLRERVFLRYGAPEVFL
FT                 SDNGTEFKNKAIDQYLLSDNGTEFKNKAIDQYLREQGVRHELTPPYHPQAN
FT                 PVERVNRTINNMVRALIEENHNTWDERLSDIAFGYNTVPHSSTGVSPAILM
FT                 YGTQPRKPSAARREQDAAAEEELQRRAIDAWHDRMWDLSQLREQASQRTQD
FT                 AQDRQKRYYDAKRKPASYKVGDLVMRRNHVLSSGAEQRSAKLAPPYIGPYK
FT                 IVEIRGTNTYRLVDEMGEQVDLAPAAQLKPFYSSATDEESQKSEEDGDAQP
FT                 PRDASVDAGTSEVPSRSERDSVCEQSDIASEASEVADRPKRXKKTRVVVIN
FT                 PATKKRGRPGKKVYTARRVRPTPETPRVEVDTEKRRPGRPKGSRNRGHATT
FT                 TTNPSTSPRKTRAQRAADLSPVDVTAKNARTKSCGPKLEIFICLGMSPEEL
FT                 QAAFERVMAALTREDERPHVVIREVGEGEDPWSAFPPDDEVEAYLAPEEED
FT                 EEEGALVIRRPEPPALVAGEGETTATGLRRPRAPQPASSSVGRPISARLER
FT                 EPVHRETNTAETRAPPAGSKATKEPSSEEAAEAAWNQHRAKLVEALEASLD
FT                 TRRLEGEAYRLYTQSVRKHGDAFRRCAGKWARLLEEGRAAFYAAEDARRKV
FT                 AKREDRERQLAKREVARIEAAFAEAKARVRQFQAPGRTSASEAEKRPRAKS
FT                 AARTPTSGASDKTSQKSCYVCGHPNVSRSNKCPDVRLHKAK*"
XX
SQ   Sequence 8209 BP; 2222 A; 2036 C; 2418 G; 1528 T; 5 other;
     ttggcgccca gttcgtgggt tacttaggaa ggaacgcgca aatattgtaa ttttcgcgat        60
     tttcggcgcg agcgagaaac cgttgcgaat ttcagaaggt cgcgcgagcg acgtaaacac       120
     gagcatcccc gtgttgttta cgtcgcgctc aaatcaggcg gatttgagcg gcgttcgaat       180
     ttattcgtgc ggcgtatacg aataattcga acgcaattca cacgagaagt ctgtgaataa       240
     taatcggaga tttttgttgc caggccgaga acaaatatct accgatatta tcacacgacg       300
     tagaattaaa cgactcggag cagcgaaact tgaagctgac actagtatcg catgctctcc       360
     gagtcgaata attttctatt tgttgtcggg agaattttaa agcactctcg ttaggataga       420
     gagtagcata attatttttt cgtgacgtct cgtgtgaaag cagagcgtat atgcgaaatt       480
     gtaagttgtt taattattaa caattaaaca acaaaaggca gcaaagcggc aacacaaacg       540
     cgtgtagccg caaagtatag tccacgcacg ctatagtgga gcgaagcgcg cagcggcgcg       600
     agtgtgtgag agagagtgcg agcgcttgcg gcgctacata gaggcaattc tacgagaacg       660
     cgacgggcgc gaggtatata gtcacttcca cgggaagacg cggaacagta tacgcccagt       720
     tttcagccaa gaagacctca agatttgtca agaagagaac acactcgact cgcagatcga       780
     gatatacgcg taattccgcg aaaaatattt tcgtcttttt tcggattttt ttttcgggtg       840
     tatgagtgcg tatatgcctg tagcacaaac tgtgcgttgc aagtgagagc acagcggtgc       900
     tacgagtgcg cgcgccagaa gcaattcgtg cttatctggc gtaattaaaa ttttttttta       960
     cggatttcgc tccgattata cgaattcgat ttttcgtttt attcgatttc gcgtaataat      1020
     ctacgtcaca gcgacgcgct taggtgtgca agtgtgtgag tagaaaggtt gtatttttgt      1080
     agcttacgtt gtagcaacaa gaatacaatc taggggctat ctggagtgag tgcgtaggat      1140
     agggagctgc cacgtcgttg ttgcgcaacc gcgaaacgtc gtttagacgc agaagacaca      1200
     ccaacatggc gaagaaagta gagaaggtcg tcgagaattg gtgcttgggc atcgacgaag      1260
     aagagatgga cgatgccctc gagagtatgc agttgaagcc agacggcaag cgattagatc      1320
     gcgttgctag gctaaacaga tggctcctcg gagagtatac cgagtcagat tttagagaga      1380
     gcctggacgc ctcgacagta atggcgcgag tgaagaggga agaactgcgt aagtcattca      1440
     tcgacgcaac ggctgaacaa gtatcgacac gctcgattta tacgggcgat tatgacgccg      1500
     aacagccgca ccctctgaag ctgttacaac aagagatcga ggccaacgaa gtcgtggtga      1560
     cgccggcgat cgagatgaac tacggtcaac cggcgcaagg attaggccaa ccgacagggc      1620
     ctaatctaca actgctaaac gcgatgacaa tgagagacgc gttcgcagaa atgccagtca      1680
     ctgaggagag tgaacaggca caagcgccag tgtcgacgcc ggaagaccaa gccaggttaa      1740
     cggcgcagga ggcgcaaggt cgagaccaga atagaatcgt cacaatagag gtgccgacag      1800
     ggaatctggt cacgacagta accacgacaa cgacgacaac gacgacaacg acgacaacga      1860
     caacgccgac aactacggcg agcgaaggca aaggcgaata cgtcttgcaa aacggaaagt      1920
     tccgcagtgt gaaggtcact gcaccacgcg cagtcatggg cgcagcggca gtgactggcg      1980
     gattagacac cagatctcag caaagcgctg caacaacgag caatcgaccg ctcaaccgag      2040
     ggtacggtga agacgagcgt tgcagcgcac aatacgccca gagtcacgaa gtatcagcgc      2100
     aaaattcggt agctcagaat gacctgctaa gtcagtcgat agctgagaat accgcaacga      2160
     tgagggcgct gatgtgcaag atggaggcca tgatgtcaca atggccgact aacatagcgt      2220
     ccagtacaag ggtggagcca ccagcaagcg agagtaatcc acagaactca cgcagagccg      2280
     gtcatgtgaa tttccaggat acgtatagta tcaatcacat gaatcacagc agcttccgcg      2340
     aagacgcggg cgcggtggct ggtggagctt ccaactcttg gatcccggcg aatcctctct      2400
     attcgcaacc cccagtagtt gctagggggg gggggggatg cgaatgcgac gaacgcgcat      2460
     acgcaagcgc tgagtgacag tagcaactac gatgggtcgc gaagacagaa caacagaccc      2520
     atcggtcctg cggtgaacaa atgggggatt aagttcaccg gggactcgtc acagagcgtc      2580
     gagaacttcc tgcaacgcat ggaaggacgc agaatgctgg acgacctgtc cgatgcgcag      2640
     atgttagcgt cattacaaga agtattgacg gataatgcgt acgagtggtt acagaaccgg      2700
     ctctccgaac agggagaatg gtctagctgg gacgatttct gcgagtgcat caagcgatgg      2760
     tacgggcaga cgcaaggcta ccagcagaaa ttactgagcg aagtaatttc gagaacgcag      2820
     gggcctggcg aacgcgtgcg ggtgtacgta aataacctgc aaggtataat gcggagaatg      2880
     gtaccccgac cagacgctag ccagcaactg gatcggatat accataatat gctgcctagt      2940
     ctcaaacgag gactccagcg gaaagatttc acaaccgtgg agcagttact cgaggcagcr      3000
     gtcgaagttg aggccgctct agcatgcgaa gcctggtaaa acgccgctcg cagccgtagg      3060
     attggcagag cagaccgaca cactgcccat aatagtcgac gccataggca agctaytcga      3120
     ctcgaagctt acggcaatag cgcaaccggc gaagcacgcc aacgctggag gaggcarcaa      3180
     gaagtcagcc cctcagcgag gacgctccgg acctaggaaa gagagaggca agtctcctag      3240
     tccgaagcgc aaaagccaga agtctggcga gggttccggt caatcggaca aaagagagca      3300
     gaggaagcca atagagtgct tcaactgcca cggaaaaggc cacattgccc gagaatgtcc      3360
     tttgggtaag ggaaacggca aaaaggagga gtaggcgagg ttactgctcc tcttgaaccg      3420
     tcgcgcgagg agtctccccg agaggagagg cacgtgacgg agggcgtagc cgatacctcg      3480
     cgcgaaacct caggcgattt tgatcgcatg gtcgcactgt tgtccagcga atctcgccag      3540
     ccgacgatat cgccaaatga agacgagtcg cgctggtggg tacaagtggg catcggaggg      3600
     ttcagagtaa gggctctcta cgacccaggc gccgctatga cagtgatggg gtcgttagga      3660
     cttcagatcg ctagcgcctg cggtcgacct ttgcgacaac gcgatggccg tcaagcacag      3720
     tgtgcaaatg gtcagacgtc gccgatcgta ggatttgtgg acttgccatt cgacgtcgcg      3780
     ggtgtacaac gcgacgtaac ggtggcgatc atgcccgaag cgaccaacga atgtctagtt      3840
     gggacgaatt tcggacgcct gttcggcgca gtccacgatc caaatgaaaa cgtcctgtat      3900
     ctgaagaagg agcgaaagat tgtccaactt caggtggcta cgatagctac agcaggggcg      3960
     atagatatcg ccgcggttgg actcgcgtac gtcagtgacg acgagcacgc gcagattcgc      4020
     agaatgctgg acagcatcct gcctaaatcc aaccgtacga tcggacggac gcagttgatt      4080
     gagcacggga tagacgttgg atcggccagg ccgataaaac agaagtatta tcccgtgtcg      4140
     ccaaaaatag aggaggagat gtatcaacaa gtacgagagt tgcttgctgc gggaatcatc      4200
     gaaccctctg acagtgcttg gtcaagcccg gtagtgatgg tgcgcaaagc gaacgggcaa      4260
     tatcgttttt gcgtcgactt ccggaaagtt aatgcgctgt caaaggctga cgcatatcca      4320
     ttacctaaca tggatgatat ccttcgtaaa ctgcagaaag cgaagtacat atcgacgttg      4380
     gaccttagca gcgcgtacca tcaaataccg ttgaaaccgg aggcgagacc tctgacggcc      4440
     tttacagttc ctgggctagg tttattccaa ttcacgcgta tgccgtttgg tttagcctac      4500
     gctggagcga ccttccagcg aatgatcgac gaagtgatca gcccagaact ccagccatac      4560
     gcgtactcgt atctcgatga tatcatcatc gcgacagaga cgttcgaaga gcatctcgag      4620
     tacttagaga aagtgctcca gcgagtgaac gcggcgtgga ttgacgatca accgggacaa      4680
     aagtgtcttt tgccgagaag aggtgaagta cctcggcgtc ctggttaatc acgatggttt      4740
     tcggccagat ccagagaaga tagcgcccat tgtggcgtat ccagcgccga aaaacctgaa      4800
     acagctgaga cgtttcttag gaatggcgtc gtggtatcgc aaattcttgc aagaattcgc      4860
     gaccgtcgct gaaccgctcc atcgcctgac gaagaaaggc agaaaatacg agtgggggac      4920
     ggaacaacaa gacgctttcc aacaagtgaa agcgctgata gcgtctgcac cgattcttca      4980
     tcgcccagat ttcgaatcac agttcgtgtt gcagacggac gccagtgaca ccggtctcgg      5040
     cgcggtactt ttccaagtaa tcaacggaga agagcgggtt ttggaattcg ctagccgcac      5100
     aatgtcgaaa gccgagagaa actacagtgt cacagagaga gaatgtctcg ctgtcatctg      5160
     ggctatacgg aagttcagac cttatattga gggatatcaa tttaaggtcg tcacggacca      5220
     cagtagtttg cggtggctat gcaacttgca taatcccacc ggacgcctag caagatgggc      5280
     actagaaatg cagggccacg tctacactgt ggagcataga aaaggcctgc taaatgccgt      5340
     accagacgca ttgtcgcgta tgtacgaaga agacgcagta ccagtcgagg cagtcggatg      5400
     ggcaagcgaa acccaggacg aatggtactg cgaaaaggtc cgtgagatac agctgcatcc      5460
     gagcaaagat ccgctgtata agatgtacgg cgggcagctg tactacttct gcccagatga      5520
     gaaattgcca gcgtctatga atgacgatac ggcatggaaa atcgtcgtgc caaaagaaaa      5580
     gcgagcagag atcttgcgag agtgtcacga cgagccatca gccggtcacc aggggcgtga      5640
     gaaaacttgt gcgcgcgtcg caatgtacta ttactggccc ggtatgtaca ccgacgtcgc      5700
     tgagtatgtt cgacgatgct tcgtttgtca gcaatgcaaa gtcgagcagc gctcgccaag      5760
     cggcctgatg ggaaaacgag tgattactcg gccatggcag atcatagcag gagatgtcat      5820
     ggggccgaaa ccaaagaccg ctcgaggaaa cgaatatatt ctcatattcg aagacttgtt      5880
     cacccgctgg atagagtgca ttccgattaa gcgggcgaac gcgaagacaa tcctgcagca      5940
     tctccgagag cgggtcttct tgcggtacgg tgcgccagag gtattcctgt cggacaatgg      6000
     cacagagttc aaaaataaag ccattgatca gtacctcctg tcggacaatg gcaccgagtt      6060
     caaaaataag gccattgatc aatacctcag agaacaaggc gtgagacacg agttgacgcc      6120
     accttatcac ccccaggcga acccagtaga gagggtaaat cgcaccatta ataacatggt      6180
     gcgcgcgctg atcgaggaga accataatac atgggacgag cgattgagcg acatcgcatt      6240
     cgggtataat accgtacctc attcctcgac aggcgtgagt ccagccatat tgatgtatgg      6300
     gactcagccg aggaaacctt ctgcagcaag gcgcgagcag gacgccgccg cagaagaaga      6360
     gttgcagcga cgcgcgatcg atgcatggca tgatcgcatg tgggatttat cccagctgcg      6420
     cgagcaagcg tcgcagagaa cgcaggacgc gcaagatcgc cagaagcgct actatgacgc      6480
     caagcgtaaa ccggcgtcat acaaagtcgg agacttagtg atgaggcgaa atcacgtgtt      6540
     gtcttctgga gcagagcaac gctccgcgaa gttagcgcca ccatatattg ggccgtataa      6600
     aatagtagaa atacgcggca ccaatactta tcgacttgtc gatgagatgg gcgagcaagt      6660
     agatcttgca ccagctgcgc agctgaagcc cttctattcg tcagcgacgg acgaagagtc      6720
     gcagaagagc gaagaagatg gcgacgctca acctccgagg gacgcgagcg tagacgcggg      6780
     tactagcgaa gtaccgtcac gaagcgagcg agactctgtc tgcgaacaga gcgatattgc      6840
     gtccgaagcg agcgaagtcg ccgaccgtcc gaagcgarcg aaaaagacgc gcgtggtcgt      6900
     aataaaccct gcgaccaaga agagaggccg tccagggaaa aaggtgtaca cggctaggcg      6960
     tgtgagacct acgccagaga ctcctagagt ggaggtcgac accgagaaga ggaggcctgg      7020
     tcgtccgaag ggttcgcgca accgcgggca tgcaacgaca actactaacc cgtcgacgtc      7080
     accgcgaaaa acgcgcgcac aaagagctgc ggacctaagc tagaaatttt catatgctta      7140
     ggtatgagtc ccgaggagct gcaagcagcc ttcgagcggg tgatggccgc gttaaccaga      7200
     gaggacgagc ggcctcacgt ggtcatccgg gaggtaggcg aaggagaaga cccctggagc      7260
     gccttccctc ccgatgacga ggtggaggcg tacctcgccc ccgaagaaga agacgaagaa      7320
     gagggggcgt tggtgatacg ccgcccagaa ccacctgcgc tggttgctgg cgagggcgaa      7380
     acgaccgcga cgggtctgcg ccgcccgcgt gcgccacaac cagcgtcgtc cagtgtcggg      7440
     cgacccattt cggctcgctt ggagcgcgag cccgtccacc gcgaaaccaa caccgcggag      7500
     acgcgagcgc cgccggctgg ctcgaaggca acgaaggagc cttcgagcga agaggcagcc      7560
     gaagcggcgt ggaaccaaca ccgcgcyaag ctggtggagg cgctggaagc gtcgctggat      7620
     acgcgccggc tggagggcga ggcgtaccgg ctgtatacgc agtcggtgcg caaacacggc      7680
     gacgccttcc gccggtgcgc cggcaaatgg gcgcgcctgc tcgaggaggg gcgagcggcg      7740
     ttctacgccg cagaagacgc gcgacgtaaa gtcgcgaagc gcgaggaccg cgagcgccaa      7800
     ctagccaagc gagaggtcgc tcggatagag gcggccttcg ccgaagcgaa agcccgcgtg      7860
     cgccagttcc aggcgccggg acggactagc gcgtcggagg cagaaaagcg tccgcgcgcg      7920
     aagagcgcgg cgcgcacacc aacatctggg gcgtcggaca agacgtccca gaaatcctgc      7980
     tacgtctgcg ggcatcccaa tgtgtcgcgc agcaacaagt gcccagatgt tcggctacac      8040
     aaggctaaat aaagcccagt aacggtagtc accgtaataa tgtgtttctt ttatcgccct      8100
     agcatcccca gattccttgt cgcggacgcg atatacgacg cttcggttcg tcgcggacga      8160
     aatggataga atcgccatct gatcgataga tcgattctag ggggagggt                  8209
//
ID   Gypsy-16-LTR_NVi repbase;    DNA;    INV; 863 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-863
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 770-770 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 863 BP; 191 A; 220 C; 251 G; 200 T; 1 other;
     tgtaacgagt tgagcaccgc agcyaactcg tagcggtatg agtaccgctg cgccgcgacg        60
     aaacagcgta gagtcgcgtg cgcgataata aacacgtgcg aattcggcaa taggcgcgaa       120
     agagatagag agagcgagcg cgcgggctaa tccttcaggt gcgcgctcag atagctctcg       180
     gccttcggaa ggtaaacacg cgacttcgcc tacaattcga aaactttcgt gatatcgtgt       240
     gctgtgctgt gtccagcgga tcgaattgta tcttgtgtgt gagtgcgacg cggagtccgg       300
     gtaatcctga tcctcctgcc tagcggtcca gcgcagtgac caagtcttgc agcctgtcca       360
     ggattaggaa cgtcgtcgac gagagagaga aggtttgtgt ggcgcgcagt gcatgggaga       420
     gagtgcatgt gcgagtgtgt atcatccggc gcgcgcgacc ttcacgacga tatacgcgtg       480
     cgagcgcgat tattctggcg tcgcggcgag tcgcaaagtt gttggcgact cacgtttatt       540
     tcgcgactag caaatataac cctagtctta ttattttacg tgatttgtcg tcatttctaa       600
     acctcgctcg cttacttccg attcctgttc cttcctgcga ataccgccgc ctccgcgggc       660
     gttatttatt agtacttatt taacgcagtt gagcagccga gcacgcgcca ggcggcgcgt       720
     agacccagca aaacagaagc agctgagaca gctgcatgca acggaggtgt ttcgcgggcg       780
     gagaggagtc ctccgccgca tcgagggaac gcgatccagt cgtttaacga gttattcgtt       840
     gatcgaattt acaccccgtt aca                                               863
//
ID   Gypsy-160_AA-I repbase;    DNA;    INV; 6087 BP.
XX
AC   AAGE02018302;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-160_AA_;
KW   Gypsy-160_AA-LTR; Gypsy-160_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6087
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018302; Positions   20078   26164.
XX
CC   Positions [2792-3295] - Reverse transcriptase
CC   Positions [4364-4840] - Integrase core
CC   'CTGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..2153
FT                 /product="Gypsy-160_AA-I_2p"
FT                 /translation="MDFNHLTEEEISYELALRHIVNVASMTHRNKVLKLKA
FT                 LTQEEILRDITHSSSDNPIDPTVNIENCSQGIQQLQSLVAHAQTSGNCQDL
FT                 SILASRLTHYKNRLAIIEPPEHLIQALQSLRQIVDTLFVNVNSAMRKTVYQ
FT                 PTERIHSGAIPKGQRQQTSVADQQSPMKPRDEREGDLSVHNSERMSEEDAN
FT                 KFGLPPSSSPLNASRGRGRGTMFQPFRGTNQRNSVAANVAGVDTEPEQHYP
FT                 RRDSEHQYNQLREDLLNRLIQMQLNQQYGNGRMEDRRMQKAIHNWPFKFRG
FT                 ERDTKTLNSFLDRVESFARSEGVSDELLLTSIKHLLQEDALDWYARVEYQG
FT                 LLDSWESFKEQIRKEYLPAQYGQLLRAEAFFRYQGQTESFAKYYRDITTLF
FT                 RFAEPAMSEDEKFFIVKKNMHADYALIITAAKPENMAELADVCSSYDDTRM
FT                 LLNRQQRKMSIPQELLVEPNLATPTAGHRPSQQITSQRFSRINAVELQEIE
FT                 LPTSNNSRPAINQCPPGGNDEDYWTMKINQLMDQVNAIKMQVERRHLRTPE
FT                 NSANGLEQRNHQRSSWRPMQQSPQQTGATFRSSQNHFAQQQRSVGSEHEQP
FT                 DNDQQQVQHGAQHLQAFENNRPITICWNCEEEGHRFADCRKQQAFLFCHGC
FT                 GKRGYTLRNCVTCRTEVGNYPAGTQQM"
FT   CDS           2198..5212
FT                 /product="Gypsy-160_AA-I_1p"
FT                 /translation="MTPQINSIVNPGQDNRPHAVISILGKELTALLDSGAN
FT                 CSLLGGKHVNIVEQLGLRKGVVVCGGIKTADGTKHKIDHFVRLPIAYNNRN
FT                 ETIPLLLIPSIPDCIILGMDFWERFGVKPVCYAIEAIIQDDLQKDLSNQEK
FT                 QQLERVIEKFPKSVEGKLGRTPMYEHRIDIGDAPPKKQRYYPMSPYVLEEV
FT                 NKEIDRMLALDVIEEARFCPWNNPLVAVKKKTGKYRVCLDARHLNSIMVNE
FT                 GYPIPQISSIMNNLSGCKYISTIDLNDAFWQLPLHKASRPLTAFTVPSRGH
FT                 FQFKVVPFGLCTASQALARVMTHLFADMEPFVFHYLDDLVICSRTFQEHLN
FT                 TLEEVARRLSSANLTISTEKSLFCRREIKYLGYILNEDGWKVDKDKIECIV
FT                 QFPVPSCRKEVQRFLGICNWYRRFISEFARIATPLTELTKTKNKFRWTEQA
FT                 EDAFLRLKSALVSAPVLAMPNYEKPFNIACDASDVAIGAVLTQDIEGEEHP
FT                 ICYFSQKLNAAERKYSATERECLAVIRGIEKFRCYVEGVKFTVFTDHAALS
FT                 YLRSMKNPTALMSRWILRLNAFNFDIKYRKGCINIVPDALSRIANLTFLGN
FT                 KDTVDDWHTRMINSVESEPDKFPDFRIVNGELFKNCKCRDETGVTTHKWKK
FT                 TVPFASRLDVIRRFHDAPSAAHLGFYKTWQKVQTHFYWPKMQSDISSYVRS
FT                 CAICKASKSPTSIMMPQMGGMKPAKQPWELISIDFVGPFTRSKRGNTVMLV
FT                 VVDWITKYVIVHPMRKADSSRLVEFLEQEVFLKFSRPRIILSDNGRQFESL
FT                 VFKSLLSRQNIIHMKTGYYSPMVNNAERVNQVLITCIRALLDEDHRSWDEN
FT                 LPTITAAINSSKHEATGVSPHFANFGRELLLHTDLYDQQDLNTPDDTQLVQ
FT                 DKRLAEIRRIQEFVLQKIRNNHIKTKQRYNMRTRAITFKIGELVWRRVFQL
FT                 SSKENHINQKLNPKFTPAIVKEVLGTNLYLLEDVSSGKRGRYHAKDIKAD"
XX
SQ   Sequence 6087 BP; 1933 A; 1353 C; 1356 G; 1445 T; 0 other;
     ttgacgccca acaaaaaata cccacacact taagccacgt tgtttgtttg ctgagcttat        60
     atttttttaa tttgatggtt tgagttcgcc tattttcaat ttagtttgtt gactctttat       120
     ttatcatgga tttcaatcac ctcaccgaag aggaaattag ctacgaatta gctttacgac       180
     acattgtcaa tgtggcatcc atgacgcatc gcaataaagt gcttaaatta aaagcactaa       240
     cgcaagagga aatcttaagg gatatcacac acagcagttc ggataatccc atagatccaa       300
     ctgttaatat tgaaaactgt tcacaaggca ttcagcaact acagtcactg gttgcgcatg       360
     cacaaacatc aggaaactgt caagatctgt caatattagc atcgcgactt actcattaca       420
     aaaatagatt ggcaataata gaaccccctg aacatctaat tcaggcacta caatcgctac       480
     gtcagatagt agacacactt ttcgtgaatg tgaacagtgc aatgagaaag acagtgtatc       540
     aaccaaccga acgaatacac agtggagcaa taccaaaagg tcaacgccaa caaacatcag       600
     tcgctgatca acaatcacca atgaaaccaa gggacgaaag agagggggac ttgagtgtgc       660
     acaactcgga aaggatgtca gaggaagatg ctaacaaatt tggattgcct ccttcgagtt       720
     caccattgaa cgcaagccgc ggtagaggaa gaggaactat gtttcaacca ttcagaggca       780
     ctaaccagcg taattcggta gccgcaaacg tcgccggagt tgacacggaa ccagagcaac       840
     attatccacg aagggacagt gaacatcaat acaaccagct gcgggaagac ttgttgaata       900
     ggctgataca gatgcagctg aatcaacagt acggcaacgg acgcatggaa gacaggagga       960
     tgcagaaggc catccacaat tggccattta agtttcgagg agaacgtgat acgaagacac      1020
     tcaactcgtt tctggaccgc gttgaatcgt tcgcacgttc agaaggggtt agtgatgagc      1080
     tgctgctgac atctattaag catttgttac aagaggatgc tttggactgg tatgcgagag      1140
     tggaatatca aggattactt gattcctggg aaagttttaa agaacaaatc agaaaagaat      1200
     atctaccagc acagtatggt caactgctca gggcagaagc attcttccgt tatcaagggc      1260
     aaacggaatc gttcgccaag tactatcgag atatcaccac tctatttagg tttgccgaac      1320
     cagccatgtc ggaggacgaa aagttcttca tcgtaaagaa gaacatgcat gctgactatg      1380
     cgctcatcat cacagcggcc aaaccggaga atatggcaga gctagcagat gtttgttcca      1440
     gttacgacga tacaaggatg ttactgaacc gccaacaacg caaaatgtcg attccacagg      1500
     agttattggt agaacccaat ttagctactc caactgctgg acatagaccg tcgcagcaga      1560
     tcacgtccca gcgtttcagc agaattaatg cagtcgaact tcaagagata gaacttccaa      1620
     cgtcaaacaa ctcacgtcca gcgatcaatc aatgcccgcc aggaggaaac gacgaggatt      1680
     actggacaat gaaaatcaat caattgatgg atcaagtcaa cgcaattaag atgcaagtag      1740
     aacggaggca tttgaggaca cctgaaaatt ctgcgaatgg tttggaacaa aggaatcacc      1800
     aacgaagttc ttggagaccc atgcagcaaa gccctcagca aacaggagcc accttccgtt      1860
     cctctcaaaa ccatttcgca cagcaacaaa gatcagtagg ttcagaacat gaacaaccag      1920
     ataacgacca gcagcaggtt cagcacgggg cacagcatct gcaagcattt gagaacaaca      1980
     gacccatcac aatttgttgg aattgtgaag aggaaggaca tcgattcgcg gactgcagga      2040
     aacaacaagc attcttgttt tgccatggat gtgggaaaag aggatacacg ttgcgtaact      2100
     gcgtcacgtg ccgcacagag gtgggaaact atccagcggg gactcagcag atgtagaggt      2160
     tggctctccg ctcaacgtaa atcctctaat cgtccacatg actccacaaa tcaattccat      2220
     agtcaatccc ggacaggaca acagaccgca tgcggtgatc agcatactgg gaaaagaact      2280
     caccgcgctt ttagacagtg gagccaactg ctcattactt ggcggaaaac acgtgaatat      2340
     agtggagcag ctaggtctgc ggaaaggagt ggtagtatgc ggtggcatca aaacagcaga      2400
     cggtaccaaa cacaagatag accacttcgt tcgtctccca attgcctaca acaatcggaa      2460
     tgagacaatt ccacttttgc tcatcccatc tatacctgat tgtatcattc tagggatgga      2520
     cttttgggag agatttggcg taaaacctgt gtgctatgct attgaagcca taattcaaga      2580
     tgaccttcag aaagacctat ccaatcaaga gaagcagcag ttagaaaggg ttatagagaa      2640
     attcccaaaa tcagtcgagg gaaagcttgg aagaacgccg atgtacgaac accgcatcga      2700
     tataggagac gcaccgccaa aaaagcaaag gtattatccg atgtctccct atgttttaga      2760
     ggaagtgaat aaggaaattg atcgtatgtt agcactagac gtcattgaag aagcacgctt      2820
     ttgtccatgg aacaatccac ttgtggctgt caaaaagaaa acggggaagt accgtgtttg      2880
     tttagatgca cgtcatctga actcgataat ggtcaatgaa ggttacccga ttccacaaat      2940
     ttcctcaata atgaacaacc taagtggttg taaatacata tcaacaattg accttaatga      3000
     cgctttttgg cagctccctc tacataaagc atcacgacct ctcacagcat tcacagtacc      3060
     gtctagagga cattttcaat ttaaagtcgt tccgtttggc ttatgcacgg caagtcaagc      3120
     tctggcacga gtaatgacac atcttttcgc agacatggag cccttcgtct ttcattactt      3180
     ggatgatctg gtaatctgtt ctcggacgtt tcaagaacat ctgaacacac ttgaggaagt      3240
     ggcgcggagg ttgtcgtccg ccaacctcac tatatctaca gaaaagtccc tcttctgtcg      3300
     cagagagata aaataccttg ggtatatact caatgaagac ggatggaaag tagacaagga      3360
     caaaatcgaa tgtattgttc agtttcccgt gccttcatgt cggaaggagg ttcaaaggtt      3420
     tttagggatc tgtaattggt accgcagatt catctccgag ttcgcacgga tcgcaacacc      3480
     tctcactgag ctaactaaaa ccaaaaataa gttcaggtgg acagagcagg cggaagacgc      3540
     cttcctgcgg ttaaaatcag cactcgtttc ggcgccggtt ctggccatgc caaactatga      3600
     aaagcctttt aatatagcat gtgatgcgag tgacgtcgcc attggggctg tgctaacaca      3660
     ggacatcgaa ggggaggagc atccaatatg ttacttttcc cagaaactaa atgctgctga      3720
     acggaaatat tcggctaccg aaagagaatg tttggctgtt atccgaggaa ttgaaaaatt      3780
     tcgttgctac gtagaaggag taaagttcac cgtgttcaca gatcatgctg ccctcagcta      3840
     tcttcgctcg atgaagaacc ctacagcact catgagtagg tggatattac ggctcaatgc      3900
     gttcaacttc gacattaagt acaggaaggg ctgtataaat atcgtgccag atgcattatc      3960
     acggatagca aaccttacat tcctaggcaa caaagatacg gtggatgact ggcacacccg      4020
     catgattaac agcgtagaaa gtgaaccaga caaatttcca gattttcgaa tagttaatgg      4080
     tgaattattc aagaactgta aatgtcgaga tgaaacaggc gtaacaactc acaaatggaa      4140
     gaaaaccgta ccattcgcaa gcagattgga cgttatccgg cgatttcatg acgctccatc      4200
     cgcagctcac ctcggtttct acaaaacctg gcagaaggtt caaacacact tctattggcc      4260
     taaaatgcag agtgatatta gcagttacgt ccgcagttgc gccatatgta aagctagtaa      4320
     atcacccaca tccattatga tgccacagat gggaggtatg aagccggcta aacaaccgtg      4380
     ggaactaatc tcaatcgatt tcgttggccc ttttactcgc tccaaacggg gaaatacggt      4440
     gatgttggta gttgtggatt ggataaccaa atacgtgata gtccatccaa tgcgcaaggc      4500
     tgattctagc cgattggttg agtttttaga acaagaagtc ttcctcaagt tttcacgtcc      4560
     tcgcatcatc ttatcggaca acggtaggca atttgagtct ttagtcttca aatcgctatt      4620
     atcgagacag aatatcatcc atatgaagac gggatattac agccctatgg tcaacaatgc      4680
     agaacgcgta aaccaggtac tcataacatg tataagagct ctcttggacg aggaccaccg      4740
     ctcatgggac gaaaatctac cgacgataac agcggcgatc aacagctcaa aacatgaagc      4800
     aacgggcgta agtccacatt ttgcaaactt tggcagagag cttcttttgc acacagactt      4860
     gtacgatcaa caagatctca atactccgga tgatacccag ctagtacagg acaagcgttt      4920
     agcagaaatc cgccggattc aggaatttgt gttgcaaaag ataagaaaca accacattaa      4980
     gacaaagcaa cgctacaata tgcgcacaag ggcaataaca ttcaagatcg gtgaactggt      5040
     gtggcgcaga gtatttcagc tgtcatcaaa agagaaccat atcaaccaga agctcaatcc      5100
     aaagttcacg ccagcaatcg taaaagaggt gttgggaacg aatctctact tgctcgaaga      5160
     cgtctcgagt ggaaaacggg gtcgatatca cgccaaggac ataaaagcag attaggacag      5220
     agacacatca atatgctgac tacaagcaac cacatctgca tgcgtcagag atgttggaga      5280
     caagctatgt acacagtatg caaggaactg tcaactaaga gcgatttcgc caggaaaata      5340
     cgattcacgg atcaggctga aggaccaaca acaacattcg aaacctcgcc gtcccttgcg      5400
     caccgatatc ctgccaaagc cagctgcctt tgccatggat tgccaaacta caaactttag      5460
     aaagcagtga ggaagcacta tctcatccaa attgcaaaat cgctgctagc caaatctaaa      5520
     gtagtcgtaa acaatgagtc agaagcaagt aaatcgggga tcggcaagaa atttcctttc      5580
     taaagtaacg cgacccgggg cgcggtaaaa ccccttataa atgggctctt gtcgattctg      5640
     gagattaaat cctcctttcc tgaaatacgg cttccatcaa actaattcaa accatcatta      5700
     tctcagcact taatttgtaa gttttaatgt tctttgttcg atcagacccc ttcattgcat      5760
     aaagggttta agatcgtcct gcgtgttcac catgaaggga gatatgacac aagaagcagg      5820
     aacaagaact ttgtcggaga cttctggcca gaaatggcgt tagatcgaaa attttgccag      5880
     aattcgctgg tacgattatg aatatgttag cctgttttgc tgagtagtca gttgtattct      5940
     tctagggaag ataacactcg aaatctgttc gagcgtccga taatgatcat ttgcgtctcc      6000
     gactaacttc ttaaaagaaa gacgaaaaat tttttcatga gccaactgtc gttgcctcat      6060
     gaaaaatttt cccttgtggt ggtgtgg                                          6087
//
ID   Gypsy-160_AA-LTR repbase;    DNA;    INV; 1628 BP.
XX
AC   AAGE02018302;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-160_AA_;
KW   Gypsy-160_AA-I; Gypsy-160_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1628
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018302; Positions   18450   20077.
XX
SQ   Sequence 1628 BP; 492 A; 360 C; 419 G; 357 T; 0 other;
     tgttacgtta gcttttagtg cgtaaagata aggtttagtt tgacaaaaat aaacctcaag        60
     tatggaacaa atatagagct tatagaaaat ctcaagtgaa atcatacgaa cgtgcataaa       120
     cctcgactcg caaagcaaga aacccctcgc aaaacgctca acgaaacgca aaacaacggg       180
     aagaacttca acgctctcgc acactacagc caaccaaaag agatcgaatc gatctactgt       240
     agcgtgatca tcattcgata gtacgtcatt gccaagaacg gatggtgcct ctggtccggt       300
     ggtgaatagg agcaatagaa catcacaggt aaccgaaaaa aagaaagata tatcgacagc       360
     agataacacc cttttgatca tgacaacatc acctacagac gctccagtgc aacgacgcaa       420
     tctacgcaga ttgcgctgtc gaaccagacc ggactcatct ccatccaaga acagagggat       480
     cacaattgcg agcacgtgca tattcaatcg ctaagcatag taagtggtac acatagagcc       540
     aatggattca gcacactgtg atccatctct caagggaatc tttctttctc tctaccatag       600
     ctatcgatcc ctccaaccgc acaagaaagc tagttcggcg aatcacgtgt gaagccaaca       660
     tacgaaggtg caaactcatc cgaaaactag agaagagccc cggcaagggt gagttgatat       720
     ggaagtgatc attcattcag ggttctaatg ttcagtgtcc attagggctc ttttgcgttg       780
     ttcatcattc cagcggaaaa cagagagacg tagtctggcc cactgcgacg cttacggtgt       840
     gtgcgcttcg agccaggaag agagcgcctt gatctccaac acccatagca aagcaattaa       900
     cagtcgcccg gcgcctcgtg tccgaatgta gtgtggctcc gttactcaag aagcacggaa       960
     ggagggtgga agagacaata tttctgcaaa gtggggcgtc agctgtgaag aagagcccat      1020
     agtgcaagtg gctgatcacc attgaaaatc gttgcttcgt tcggagaaga taattgggag      1080
     agttgcagaa agaaaatttg agtgtggtgg agtgacatcg gtggtgtgcc agtgggtgaa      1140
     gaacgtgccg caaagcggtg cttactcaga agaggcaagg agaaagtcaa ccgtaccaag      1200
     tcgatcgttg gtacgcggag agaagttggt gtgagacgag agacggttgc gttccatcca      1260
     gcacgccgct ccgacgtcga gagaagtgag tggcacggtg gttgacgtcg ctgagaagtt      1320
     aatcagagcg acgccgcgag gacgagccga ggcaatgcga gttcgagggt tgcgttcgtc      1380
     atcagcgtga gttccgtgag cccgtgagta ccaagagaaa atgaacttgt acatttaact      1440
     ttaagcaccc agagagctag atagggccct aaggggcatt cagggcaaga tgaacaagat      1500
     aacaaaataa aatcaaatgt cgtaatttta ggctgttgct tgcgtaattt gttggtgcga      1560
     aattccctga attgagcttt gttctggtgg cctagccttg attccaccat aggacatatt      1620
     tcgtaaca                                                               1628
//
ID   Gypsy-162_AA-I repbase;    DNA;    INV; 5335 BP.
XX
AC   AAGE02018483;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-162_AA_;
KW   Gypsy-162_AA-LTR; Gypsy-162_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5335
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018483; Positions   21161   15827.
XX
CC   Positions [2359-2859] - Reverse transcriptase
CC   Positions [3994-4464] - Integrase core
CC   'CGTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           808..5163
FT                 /product="Gypsy-162_AA-I_1p"
FT                 /translation="MAQSNINTTLEPFRRGNSFGDWVERLGFFFNMNKVPV
FT                 EEKRDHFITLSGPVIFRELKLLYPNSNLAEVPYDEMINKLKARLDKTESDL
FT                 VQRLKFNVRVQQPDESLEDFVLSVKLQAEFCNFENFKQMAIRDRIVAGIRD
FT                 KALQQRLLNEEKLTLETAEKLIATWEIARNNAKNMDYGNTADQIASLKASS
FT                 FPGARLNKLAATMHMAGRSDGDDERNRGSVKNRLGYTPYQRGQWKNKQWQS
FT                 RQRQDLEVRNRSSARPNYSQMVCDFCGVQGHIKRKCFKLKNMHRDAVNMVN
FT                 PDTSGSNPDEYLSELVNRLRADTDSENEDDGETNVLQCMHVSTVGKISDPC
FT                 LVNVKIDDVWCDMEVDCGSSVSVMGRKQYFEHFDKALSKSHRNLIVVNGTS
FT                 LLIEGEANVCVTFRGISKDLKLLVLNCENNFVPLLGRPWLDVFFPKWRNFF
FT                 VNAISSGIEPIQDTVDEIKTKYKNIFAKSFTSPIKGFEADLVLKTENPIFR
FT                 KAYDVPYRLRDKVLEYLKKLEEEAVITPVKTSEWASPVIVVMKKNNQIRLV
FT                 IDCKVSVNKLIIPNTYPLPTAQDVFAGLAGCKIFCSLDLEGAYTQLSLSEK
FT                 SKKIMVINTIKGLYTYNRLPQGASSSAAIFQQVMDQVLNGIENVSVYLDDV
FT                 LIAGKDFDDCRQKLFIVLDRLKCANIKVNWEKCKLFVNELIHLGHIISEKG
FT                 LMPCPDKISTIEKAKVPRNETELKSFLGLINYYHKFIPRLSTKLYHLYNLL
FT                 KSGVKFTWDDNCNEAFEESKNALLEAPFLEFYDPNKPIVIVSDASGYGLGG
FT                 VMAHIIDGVEKPIYFTSFSLNAAQRNYPILHLEALALVCTIKKFHKFVFGK
FT                 KFYVYTDHKPLVGIFGKEGKNSIYATRLQRFVLELSIYEFEIQYRPSKRMG
FT                 NADFCSRFPVDMAVPDEYDVGLINSINFSRQFPIDFCIIAAQTKEDEFLKN
FT                 VIYFMTNGWPEKISKQYIDVYANQKDLELIDECLLYQNRVVIPMSLKKQVL
FT                 KLLHANHAGIVKMKRLARQNVYWFGINSDIENYVAVCDTCNSMMIVPKLKT
FT                 KSKWIATTRPFSRVHIDFFHFDHRTYLLVVDSYSKWIEVELMKNGTDCGKV
FT                 LKKLVGIFARYGLPDVLVSDGGPPFNSHAFVDFLKRQGINVLKSPPYNPSS
FT                 NGQAERLVRTVKEVLKKFLLDPEFIDLDLDDQINLFLINYRNNCLTVEGNY
FT                 PAQMIFSYKPKTILDLLNPKSHYKKQLCVEPMHDKLTNNKDTNLVHDDNSK
FT                 DVGNANACIPDPFENLMQGDEIWYKNHNPHHTARWLKASYIKRHSRNTFQV
FT                 LIGNVPTTAHRGQLRIYKEGESFEKPNVLLRRQQRETHKLKDDEEFRGFSD
FT                 EEVRSSKPRLDGFGELNKKRNVSLRRQQLEPEVDRGEPYSAPEDVRCRRKR
FT                 RIVVDEALQDVEMSTDCVPRRSKRIRQANMDKDFVYMI"
XX
SQ   Sequence 5335 BP; 1776 A; 841 C; 1139 G; 1579 T; 0 other;
     gttggcgacg aaaaaaagtg gttttggaca agttagtgaa gtgtttcact gcacttagtg        60
     aggaagatta attaaatcgg ctaccttgtg acggatcgac gccatcgcgt aggaatttca       120
     atcaaactta tcaaatcgct ggaggcaatt tacgttcggc gttgttggac aggctataat       180
     cactgatcac tgatttcggt tgtgcagtaa ccgtgaataa gaattacggt tctggaaggg       240
     tgtggtaagt tttgagcaga aattttagcg cgttagctga aaccaccatt ttgtatggta       300
     atcaaagaaa gatccggaaa gtataagagc tattgttcct gtataataag attaaaataa       360
     taagttcaga atataaaaga aatcgtacaa cacaatagct ttattgtaga tgctttatta       420
     agagagtttt tcttctattt attagatctc atagtgattg tgacctgaca aacaattgat       480
     catcattggt gtaggcttta cacagtggtc ccggtgtgtt tttttgctga ttggctagct       540
     gctgtggtca agcagttacg gcagatcgaa aggttgtaag cggagatttc cttcccaggt       600
     agcggtttcc attgacgtca actgacggct cgtgtgttag ccaaagggct gcgagtagtg       660
     acctacacaa cgtcggcaaa ggctgaaaat cattctggtg agtttttact tttctttact       720
     cttgagggaa aagatccaga gaatccggca gttaagcaaa gtcgtttatt ttagcttttg       780
     gatattttta ctgaccaata tactgtaatg gctcaatcga acattaacac taccttggaa       840
     ccattccgta gaggaaattc ctttggagat tgggttgagc gtctaggttt cttttttaat       900
     atgaataaag tacctgtcga ggaaaagcgt gatcatttca ttacgctcag tggtcccgtt       960
     atttttaggg aactaaaatt attgtaccca aatagtaatc ttgcggaggt tccatatgat      1020
     gaaatgatta acaaattaaa agcacgacta gataaaacgg agtccgatct ggtgcaaaga      1080
     ttaaaattta acgtcagagt gcagcaaccg gatgaatcat tagaggattt cgtgttgtct      1140
     gtaaaactcc aggcagagtt ctgcaatttt gaaaatttta aacagatggc tatcagagac      1200
     cgcattgttg ccgggatccg ggacaaagct ctccagcaaa ggttgcttaa tgaagagaag      1260
     ctaactttag aaacagcaga aaaactaata gcgacctggg aaattgccag gaataatgct      1320
     aaaaatatgg attacggtaa cactgcggat cagatagcat cattaaaagc atctagtttc      1380
     cctggcgcta gactcaataa gctagcagct acaatgcata tggcgggccg gtcagatggt      1440
     gatgatgagc gaaatcgtgg atcagttaag aataggctag ggtatactcc ttatcaacga      1500
     ggccaatgga agaacaaaca atggcaaagc agacaaagac aagacctgga agtaaggaat      1560
     cgctcatcgg cccgacctaa ttattcacaa atggtttgtg acttctgtgg ggtgcaaggt      1620
     cacattaaaa gaaaatgctt taaactaaaa aatatgcatc gagatgctgt gaatatggtt      1680
     aacccggaca cctcaggatc taacccggat gaatatttga gtgaactggt caacagatta      1740
     cgagcggaca ctgacagtga aaatgaggat gatggtgaga caaatgttct tcaatgtatg      1800
     cacgtttcaa cagttggtaa aattagtgat ccttgtctgg tgaatgtaaa aatagatgat      1860
     gtttggtgtg acatggaggt ggattgtggt tcgtctgtat ctgtgatggg aagaaaacag      1920
     tattttgaac attttgacaa agctttatca aaaagccata gaaatttgat agtagtaaac      1980
     gggacaagtc ttctaattga aggtgaagct aatgtttgtg taacttttag gggaatttca      2040
     aaagatttga agcttctggt gctaaattgt gaaaacaatt ttgttccttt attgggtaga      2100
     ccttggcttg acgtattctt ccccaaatgg agaaattttt tcgtcaatgc aatttcttct      2160
     ggaattgaac caatccaaga tacggtagat gaaataaaaa ccaaatataa aaatattttt      2220
     gcaaaaagtt ttacttctcc aatcaaaggt tttgaagcag atttagtcct gaaaactgaa      2280
     aatccgatat ttaggaaggc atatgatgta ccctaccgtt tgcgggataa agttttagaa      2340
     tatttgaaga aattagagga agaggcggta attacccctg tcaaaacaag tgaatgggcc      2400
     tccccagtaa ttgttgtaat gaaaaaaaat aatcaaattc gattagtaat agattgcaaa      2460
     gtttcagtaa ataaattgat cattcctaat acataccctc tacccaccgc ccaagatgtt      2520
     tttgctggat tggctggttg taaaatattt tgttcattag atctagaggg agcctatacg      2580
     cagttatctt tgtcggagaa atcaaaaaaa attatggtaa ttaacacaat aaaaggactt      2640
     tacacgtata acagattgcc ccaaggagct tcgtccagtg cagcaatatt tcaacaagtg      2700
     atggaccagg ttcttaatgg aattgagaat gtgtcggtat acctagatga tgttttgata      2760
     gcaggaaaag attttgatga ctgtagacaa aaattgttta ttgtacttga taggttaaaa      2820
     tgtgcaaata tcaaagtaaa ttgggaaaaa tgtaaacttt ttgttaatga attgattcat      2880
     ttgggacaca ttattagtga aaaaggatta atgccatgcc cagataaaat atctactatt      2940
     gaaaaagcta aagtacctcg caatgaaaca gaattgaaat cttttctagg actgattaat      3000
     tattatcata aatttattcc aagattatcc actaaactgt accatttgta taatttattg      3060
     aagtcgggtg ttaaatttac ttgggatgat aactgtaatg aagcttttga agaaagtaaa      3120
     aatgcattat tagaggcacc ctttttggag ttttatgacc ccaataaacc cattgtgata      3180
     gtttcagacg cgtcggggta cggcttgggg ggtgttatgg cacatataat tgatggggtt      3240
     gaaaaaccga tttacttcac atccttttct ttaaatgcag ctcaacgaaa ctatcctatt      3300
     cttcatttgg aagcactggc tttagtttgt acgattaaaa aattccacaa atttgtattt      3360
     ggtaaaaaat tttatgttta cactgatcat aaaccactag taggtatttt tggcaaggag      3420
     ggaaaaaact ctatttatgc tacaagattg caaagatttg tactggaact ttcaatttac      3480
     gaattcgaga ttcaatatag accttcaaag cgaatgggca acgcagattt ctgctcacgt      3540
     ttccctgtag atatggctgt tccggacgaa tatgatgtag gattaataaa cagtattaat      3600
     tttagtagac aatttcctat tgatttttgt attatagcag ctcagacaaa agaagacgaa      3660
     ttcttgaaaa acgtaatata ttttatgaca aacggctggc ctgagaaaat aagcaaacag      3720
     tatattgatg tttacgccaa ccagaaagat ttagaactga ttgatgaatg tcttttgtat      3780
     caaaataggg tagtgatacc tatgtcgtta aagaaacagg ttttaaaatt attgcatgcc      3840
     aaccatgctg ggatagttaa aatgaaaagg ttagcaagac agaacgtgta ttggtttgga      3900
     attaactctg atattgaaaa ttacgtagcg gtttgtgaca cgtgcaatag tatgatgatt      3960
     gttcccaaac tgaaaacgaa atctaaatgg atagctacga cacgaccgtt cagtagggta      4020
     catatcgatt tttttcattt tgatcaccgc acatatttgt tggtggtcga tagctattcc      4080
     aagtggattg aagttgaact gatgaaaaat ggaacagatt gtgggaaagt gttaaagaaa      4140
     ctagtgggca tatttgctag atatggatta ccagacgttc tagtgtctga tggaggtcct      4200
     ccatttaatt ctcatgcttt tgtagatttt ttgaagcgac agggaatcaa tgttcttaag      4260
     agtcctccgt ataatccctc cagtaacggt caagctgaga ggttggtaag gaccgtaaaa      4320
     gaggtgctaa aaaagtttct acttgaccca gaatttatag atttagactt ggatgatcag      4380
     atcaatctgt ttttgatcaa ttacagaaac aactgtctta cagtcgaggg aaattaccca      4440
     gcgcaaatga tattttctta taagccaaaa acaattttag atttgttaaa tccaaaatca      4500
     cattataaaa aacaattatg tgtagaaccg atgcatgata agttaactaa taataaagac      4560
     acaaacctag tgcatgatga taattcgaag gatgtaggga atgcaaatgc atgtataccc      4620
     gatccatttg aaaatctgat gcagggagat gagatttggt ataaaaatca taatccacat      4680
     catactgcta gatggctcaa agcaagttat attaaaaggc actctcgcaa cactttccag      4740
     gttctaattg gaaacgtacc aaccacagca catcgaggac aactacgcat ttataaggaa      4800
     ggtgaatcct tcgaaaaacc aaatgtcctt ctgcgtcgac aacaacggga aacccataaa      4860
     ctcaaagatg atgaagaatt tcgtggattt tcggatgagg aagttagaag tagcaaacct      4920
     cgccttgatg gatttggaga gcttaacaaa aaacgaaacg tatcattgcg ccggcaacag      4980
     ctggaaccag aagttgatcg aggggaacct tacagtgctc cagaagatgt caggtgcagg      5040
     aggaaaagga gaattgtggt tgatgaagcg cttcaagatg ttgaaatgtc gactgattgc      5100
     gtaccgaggc gatcaaaacg gattcgccaa gctaacatgg acaaagattt tgtttacatg      5160
     atttaaattg tgattatatt cacgttctga aatttctcta ttatatacaa tgaattctga      5220
     gttcaatcga agttcctatt agtaatgtta acgacttaga atataagttt cgaattattg      5280
     aaatattaat caatcaaaca ctgtaatact gatagctatt tgaagaggga agagc           5335
//
ID   Gypsy-162_AA-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   AAGE02018483;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-162_AA_;
KW   Gypsy-162_AA-I; Gypsy-162_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-251
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018483; Positions   15826   15576.
XX
SQ   Sequence 251 BP; 86 A; 47 C; 43 G; 75 T; 0 other;
     tgatatgttt tcattttgag tgtatccatt ttgccttacg catactctga tataaacgaa        60
     atgcgatgtt ttcaagaaca atcagaagcg accaacgaga ggtctgttgg tcaaacggaa       120
     aagagaaata aatcattact attcgagtgc tagctagaaa cagttgtcta cctcttatac       180
     cttcaaacca atcacggacc ttgatctaac ttagttgaag ttcaattaag cttagtaaag       240
     caaatctaac a                                                            251
//
ID   Gypsy-163_AA-I repbase;    DNA;    INV; 4705 BP.
XX
AC   AAGE02017816;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-163_AA_;
KW   Gypsy-163_AA-LTR; Gypsy-163_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4705
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017816; Positions   24356   19652.
XX
CC   Positions [3555-4010] - Integrase core
CC   'TGTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           321..4649
FT                 /product="Gypsy-163_AA-I_1p"
FT                 /translation="MASGVDRLPQSLDCTNLSKEWPRWKQKFNIYMIANNK
FT                 TGETERSKIATFLWLVGEHGVEIYNTLFPNNGDVESMFGGGAAGGDQPAGG
FT                 GEENNQPAAVDPAAGAAQVRTLTQVINAFDAYCLPRKNLAVEAFKFNLIMQ
FT                 KEKQPFAEFETALRTQLAYCEFECEACHTSYADRMLRDRIIIGIQDKKLQL
FT                 KLLDGKNEPLANILEMCKVYEAAAENKQLLERKEVHNVIDKSAKANGEIAA
FT                 LKTLTCYNCGQPFNGRHRRYCPAIDVVCDGCGRRGHFKKYCRTTKHDNKSG
FT                 SQYSSNGGARSSAGSKHDVKQAAVNTNVHMVNWADAGNFFVADSNNNHSKC
FT                 RFPGRSISNYRIDSNATSNGEAGGKWTKRYLIQDWPVNFKLDTGADVNCIP
FT                 LSVITRMNIPVLNKRSFNVVDYSSNEIKIHGLVTLKCVDEGKGLTHTADFL
FT                 VVDDSFEPLIGRESCVAFGLIERLDSLECLVSFPSEREKFIESNVDVFEGL
FT                 GKLPGYCTIVLKDNAVPSLHYKKRIPMSLHDRLKTELENMVAHGIISPVDY
FT                 PTDWVNNMQIVEKPNGSLRICLDPKPLNACIKREHFLIPKSEDLLSRLSGK
FT                 RVFTVLDLRNGFWQMELDRQSSDLTTFMTPFGRFRWNRLPFGISSAPELFQ
FT                 KRMIQLFGDIPGVEVYFDDVAISGENFEEHDKTLAIVLERARKNNVKFNSV
FT                 KTQYRSDEVKFMGHIISEGQIRPDQSYISAILDMPKPKTKSDVLRLLGLLK
FT                 YIGKFIPNLSQRTAALRELSRNDVEWSWTDVQERELKDLLGSITTTPVLAI
FT                 FDPSKSVTVQTDSSKDGLGSVLMQDGKAVAYASRTLSNSEKKWAQIEKELL
FT                 AIVFACERFHYFLYGREFVVQSDHKPLESLVKRDIDDVTPRLQRMFLHLLK
FT                 YPGMNIKYTPGKDMLIADCLSRAALPGSKDLPEELSGMIHAITRSVCLSPD
FT                 NYKLYVETLNNDERYRRIIGYVDHGWPSYHQLDDLGQLFFKHRHLLHFENG
FT                 LLFKEHRLVIPTSLQSTISTWLHAPHLGVEKTLARARAQFFWPGMSNDITE
FT                 LVKECNVCEKFTRNIQKEPLHQDSPPCYPFQRVGIDLYEYAGHDHVVILDA
FT                 YSGYVISRQLNEKSARHVIDVLDRVFCDYGYPTQIRCDNVPFNSSAFDSYA
FT                 NECNIEFVFSSPRYPQSNGLAEKGVAIAKNILKRCYEAGNVKSFRYRLFEY
FT                 NTTPVASMGLTPAQLFFGRQLKTRLPISSNLLLRNNLKENHVAEKIKRKRR
FT                 YQKQYYDRSSKPLPVLNVGDKVIFKKNGKEWHYGQIVRIVNSRSYIVRDGS
FT                 GNHFRRNRRFIATTQNQSPNDNELFFEKHIDRHNRPDRSVVRPPHFDHSNS
FT                 DQQLPVRLELQDGGRSELQSPDTSLEVDPDSFYTASDSESPIDVDLTNSMS
FT                 QSDSDDSSINVPYKTRSGRVVRLPIRFDI"
XX
SQ   Sequence 4705 BP; 1375 A; 907 C; 1094 G; 1329 T; 0 other;
     tggtgtcaga agtgaaagga tattcgtgaa aacggactga aaaccagttc gagtgtcgtg        60
     aaaattctac atgagtagcg aaaattaaac catttagttg tcgccattgg cgtctgaaag       120
     aaaccgcaag gaaaaccggt tcaatttgtg cagtcgtgaa tcgtattcaa tcattgatgt       180
     gtatgtgtaa gctcggttcg cagaaaattc tgtgagcagt gagagaccga atagtgggca       240
     gtgagagacc gaaagtaaca gcacccttgc actcacactg tgaagattga actgtcaaac       300
     cagaattgaa atttgtaaac atggcaagtg gtgtggatcg actaccgcaa tccttggact       360
     gcacaaattt atcgaaagag tggccaagat ggaagcaaaa gttcaacatt tacatgattg       420
     cgaacaacaa aactggcgaa acagagagaa gtaaaattgc aacgttttta tggctagttg       480
     gtgagcatgg tgtggaaatt tataacactt tgtttccgaa taatggtgac gtcgaaagta       540
     tgttcggtgg aggagcggcc ggcggcgatc agccagctgg aggaggcgag gaaaacaatc       600
     aaccagccgc cgtggatcct gctgcgggag cagcacaagt acgcacactt acgcaggtga       660
     tcaatgcgtt tgatgcgtac tgtcttcccc ggaaaaatct ggcagttgag gcgttcaagt       720
     ttaatttgat catgcagaaa gaaaagcaac cgtttgctga attcgaaaca gctcttcgca       780
     cccagctggc atattgtgag tttgaatgtg aagcttgcca tacttcgtat gcagaccgga       840
     tgttgcgtga ccggattatc atcggaattc aggacaagaa gctacaactc aaactgttgg       900
     atggaaagaa tgagccgctc gcaaacattc ttgaaatgtg caaagtttac gaagccgctg       960
     ccgaaaataa acaactgttg gaacgcaagg aggtgcataa cgtaatcgat aaatctgcaa      1020
     aggcgaatgg tgagatagca gctttgaaga cattgacgtg ctacaattgt ggtcagccgt      1080
     ttaatggacg tcatcggcgt tattgtccag ctatcgatgt agtttgtgac ggatgcggac      1140
     ggcgtggcca cttcaaaaag tactgcagaa caaccaaaca cgacaacaag agcggtagcc      1200
     agtacagcag taacggagga gcgcgttcgt cagcgggatc taagcacgac gtgaagcagg      1260
     cagcagtcaa cactaatgta catatggtaa actgggctga tgcaggtaat ttttttgtag      1320
     cggattcgaa taacaatcat agtaaatgta ggtttcctgg tagatccatc tctaactata      1380
     gaatagattc gaatgcaacg tcaaatgggg aggcaggtgg aaaatggacc aagcgatatc      1440
     taatccagga ctggccggtt aatttcaagc tcgataccgg cgctgacgtt aattgcatac      1500
     cactgagtgt tattacccgt atgaacatcc ctgttttaaa taaacgatct ttcaatgttg      1560
     ttgactacag ttctaatgaa attaaaatac atggtttggt tacgctaaag tgtgtggatg      1620
     aaggtaaggg tttaactcat acggccgatt tcctcgttgt cgatgattcg tttgagcctt      1680
     taattggacg tgaatcgtgt gttgcctttg gtcttattga gcgtttggac agtttagaat      1740
     gcttggtttc cttcccatcc gaaagagaaa agttcattga atcaaatgta gatgtatttg      1800
     agggcttggg taagctgcca ggttattgta ctattgttct taaagacaac gctgttccat      1860
     cccttcatta caagaaacgt attccgatga gtctgcatga tcgtcttaaa acggaacttg      1920
     aaaatatggt agcgcacggt attatcagtc ctgtggatta ccctacagat tgggtgaaca      1980
     atatgcagat agtcgaaaaa ccaaacggtt ctttgcgtat ttgtttagat cctaaacctt      2040
     tgaacgcgtg tataaagaga gagcattttc ttattccaaa atctgaagat ctcctcagtc      2100
     gtttgtcggg aaagcgcgtt ttcactgtgc tggatctacg taatggcttc tggcaaatgg      2160
     agttggatcg ccaaagctcg gacttaacta cattcatgac cccattcggc cggtttcgct      2220
     ggaaccgtct tccatttgga ataagtagcg caccagagct atttcaaaaa agaatgatac      2280
     aattatttgg agatatccca ggagttgagg tgtattttga tgatgttgcg atttcaggag      2340
     aaaattttga agaacatgac aaaactttag ctattgttct tgagcgagca cgtaagaata      2400
     acgtaaagtt caattctgtc aaaacgcaat acagatctga tgaggtcaag ttcatgggtc      2460
     atattatctc cgaggggcaa atacgacctg atcaatcgta tatatctgcg atccttgata      2520
     tgcccaaacc caaaactaaa tcggatgttc ttcggctgct tggattacta aaatatattg      2580
     gaaagtttat tcctaatttg tcccagcgca ctgctgctct cagagagctg tctcgaaatg      2640
     atgtcgaatg gtcgtggaca gacgttcagg aacgagaact caaagatcta ttaggctcta      2700
     taactacaac acctgtgtta gccatatttg atccaagtaa gtctgttact gttcaaactg      2760
     atagttcaaa ggatggtcta ggaagtgtac taatgcaaga tggaaaggcg gtggcttatg      2820
     cttctcgaac actgtcgaat agtgagaaga agtgggctca gattgaaaag gagcttcttg      2880
     ctattgtgtt cgcttgtgaa cgattccatt atttcctcta tggtcgagag ttcgtagtac      2940
     aatccgatca taagcccttg gagtcattgg taaaacgtga tatcgatgac gttacgcctc      3000
     gtcttcaaag gatgttttta catttgttga aatacccggg aatgaacata aaatacacac      3060
     ctggcaagga tatgttgatt gctgattgcc tgtctcgtgc agcacttcca ggtagcaagg      3120
     atttgcctga ggaactttcc ggtatgattc atgccataac tcgtagtgta tgcttatccc      3180
     ctgataatta caaactctat gtagaaacct tgaacaacga tgaacgttat cgtcgcatta      3240
     ttggctacgt ggatcatggc tggccatctt atcatcagct ggatgatctt ggtcagcttt      3300
     tctttaaaca tcggcattta ctgcatttcg aaaacggatt gctgtttaaa gaacatcgtc      3360
     tggttattcc aacatcactg cagtcgacaa tatctacgtg gctacatgcg ccacatttgg      3420
     gtgtggaaaa gactcttgca cgcgcaagag ctcagttctt ttggcctgga atgtctaacg      3480
     atatcactga actagtcaaa gaatgtaatg tttgtgaaaa gtttactcgt aatattcaaa      3540
     aggaacctct ccaccaggac tctcctccct gctacccttt tcaacgtgtt ggtattgatc      3600
     tgtatgagta tgccgggcat gatcatgtgg taatcctaga tgcttattcg ggatatgtta      3660
     tatccagaca gttgaatgag aagtccgccc gccatgtgat tgacgttctt gatcgagtgt      3720
     tttgtgacta tggctatcct acacagatta ggtgtgataa cgtacctttt aactcgtctg      3780
     catttgattc atatgctaat gaatgcaaca tagaatttgt gttttctagt cctcgatacc      3840
     cacagagcaa tggtttggca gaaaagggtg tggctattgc taagaacatt cttaaaaggt      3900
     gttatgaagc tggcaacgtg aaatcttttc gttatcgatt gtttgagtac aatactactc      3960
     ctgtagcgag tatgggcctc actccagctc aactattctt tgggcgccaa ctcaagacgc      4020
     ggctaccaat atccagtaac ttgcttttgc gaaataattt gaaagaaaac catgttgcgg      4080
     aaaagataaa acgtaaacgc cggtatcaga agcagtacta tgatcgttct tctaaaccgt      4140
     tgccagtcct gaatgttggt gataaagtta tttttaaaaa gaacggtaaa gagtggcact      4200
     acggtcaaat cgtgcgtatt gttaacagtc gatcatacat cgttagggac ggttctggga      4260
     atcatttccg acgaaatagg cggtttattg caacaacaca aaatcaaagt ccaaatgaca      4320
     atgagctgtt ttttgaaaaa cacattgatc gacacaatcg tcctgatcga tcagttgtta      4380
     ggccaccaca ttttgaccat tccaattcag atcagcagct tcctgttaga cttgaactac      4440
     aggatggtgg tagatcagaa ctacagtcac ctgatacatc gctggaagtt gatcccgata      4500
     gcttctatac agcaagtgat tcagagtccc ccattgacgt tgacttaacg aatagtatgt      4560
     ctcaatctga ttcggatgat tcttctataa atgtacctta taagacgcgt agtggacgtg      4620
     ttgtgcgcct tccgatcaga tttgatattt agagatagat taggataagt ttttttttta      4680
     tcatcaaaag aaaaaagaga aagcg                                            4705
//
ID   Gypsy-163_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   AAGE02017816;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-163_AA_;
KW   Gypsy-163_AA-I; Gypsy-163_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-186
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017816; Positions   19651   19466.
XX
SQ   Sequence 186 BP; 52 A; 27 C; 34 G; 73 T; 0 other;
     tgtaataagt tgtaataagt ttcagaaaat ctggcaacac ttgtattaag gcttttcgtg        60
     ttgtatttag aatgttctgt tgtatttgca tagtcagttc taatctagcc atcaggttga       120
     tcgggtcgaa taaaattgtt ctcgttaaat cacgttgttt tcctaataag tccgatactt       180
     attaca                                                                  186
//
ID   Gypsy-164_AA-I repbase;    DNA;    INV; 5978 BP.
XX
AC   AAGE02017464;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-164_AA_;
KW   Gypsy-164_AA-LTR; Gypsy-164_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5978
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017464; Positions    6427     450.
XX
CC   Positions [5036-5383] - Integrase core
CC   'AGAG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3099..3704,3708..5069)
FT                 /product="Gypsy-164_AA-I_1p"
FT                 /translation="MLNDEIIEEAKSEWNSPLLLVPKKSENGKNKWRLVID
FT                 YRKLNANLQDDKFPLPNIEEVIDSLSGAQHFTHLDLSQGYYQCELKPEDRH
FT                 VTAFSTPTGQYQMTRLPMGLKISPSSFSRLMTVAMSGLNLERCLIYLDDII
FT                 VFGRTFDEHNKNLISVFQRLREVNLKLNPAKCNFFKQELIYLGHFISKEGV
FT                 LPVPQKIETIKSKSPSSSDEVKRFVAFANYYRKHIRNFASLCSPLNYLTRK
FT                 GSEFNLNSECETAFQQLKASFINPPLLDYPDFSEENTFKLHTDASGYGIGA
FT                 VLSNKNEKPIAYASKPLNNAEKNYSTIEKELLAIVWAIRHFRAYLYGRKFE
FT                 LYTDHRPLVYLFTLTDPSSRLTKFRLALEEYNFDVFYKKGCENAVADALSR
FT                 ISTTELKDMHTKLTQEAFITTRMQTRREKNKTNHEKNVTGHDNPTMKIIQI
FT                 IVKDHSSEENAKWIPENETILIKPTETLVSLRRTMKELGKICTQQNVDELY
FT                 IKINNQSAHKFYEQITSNDLQKGIPNIIRIASNIKVIEDEVTKKLILNDYH
FT                 VLLTAGHAGVKRTMNTIRQRYYWNGMKQDVHKFVKSCEKCQKYKSINVPKP
FT                 EMTITTTANTAFEKVYLDLVGPLIPSEGYEYILTTQCELTKFVTATSTRQQ
FT                 KQLRRHL"
XX
SQ   Sequence 5978 BP; 2162 A; 1114 C; 1152 G; 1550 T; 0 other;
     tggcgatcct gccagttctg aaatcttctt aagaaaaaag aaagtggtaa gtgcaatcgt        60
     gataattaaa aagcaatagc tgatcaatcc aattttcccg attgaaaggg tccaaacagt       120
     gtgtaaagac atcgatttca ctccgttttt gtttcaaacc aaagtgcaag tgacaatggg       180
     ctggttttcg gcggacgaaa tcgtcgccgc cccagccgcc gcaagtgcat cagaagggca       240
     ctacaccgcc caatcggttt ctccgtgtat tttagctaca gtagccgtag gctacgtagt       300
     gctacgaggg ttagcgaaaa tacatcgcca actcacagaa cgggtcgcag aaagaacaac       360
     ccgccgcgtc gcggcgcagg tgtaaagaaa ccattaatta tgaacaattt attagtgacc       420
     gtcgtttaat tatgaacaat ttgttagaaa ccgtcgcgaa gaagaacagt tagttataaa       480
     ctttgggaaa tgaataagtg aaggatggat caaaaagtgg atcattatac ctacactctg       540
     tgctttaccc agattgtcca aataagaaac aatttaaaag tgagggcagt gaaaagcttc       600
     acaacagaag aagctaaagc ccagctaagg attgtgacag ccaccggagt accagcattc       660
     ctttgccaga cccttggaac agaaacattc gcagccccgg tgatgcgaaa actgactcag       720
     gagattcgga aatggatgca gccagccagc gtctacgagt gaatcaatca gtggatcaga       780
     tgcaggacca gctgaagccc agaagtgacg tgatgtcctg atcaatcccg accccatccg       840
     acgccatctg gtaacgaatc gaagtgtctc tgtttagtca tcttgtacgt ataaaaaatt       900
     ttccattttt tttttatgta aacaacaata ccttactagc aagataagta gctgtaacaa       960
     ttcctatttg aaatccaaga acatgatttt gaaatgttgc cagtaaaact tcttctaagt      1020
     actagttcct ctaagttaat tgtttttgtg tcctacttga accatacatg gaccaatatt      1080
     tcgaaaagga aacagtggtt aggaatttat taaagtctgt tgccggagct aacgcaaaaa      1140
     ggcctcagta caataaaaag aaggatacgg tactaaggca cgtaaattga taacctgttc      1200
     gcggagttca ggcaacaggt aaacgatttt ttcatcaaaa aagagaagga ggacgaagaa      1260
     gaaggaggtg aaaaagaaga aagcgaagaa gataaagaaa aaatgccgcc aaaactggac      1320
     ctcagcattg ggctgaaact tgtggacaag ttcagcggtg acgctgagaa aatagcagga      1380
     ttttttgagt cagtagatct gttgaaagat tactccgact gaagcggata tactgaagtt      1440
     tatcaaaaca cgtctggttg gtcccgcaca tggggtgatc aacaccgcag tgacattggc      1500
     aaatgcgaaa gctttgctaa aaaacaaatt cgctatgaaa ttcagcccac aagccatcga      1560
     atctgagatg gctagcgtta aacagaagaa atcttctgtt agtgaatatg gacaacagat      1620
     taacgagcta gctgcaaagc tcgcagcagc tcatgtatca cgtggaacct ttgatgacga      1680
     ggcagcagct gacgcagtgg ttcagcctgt caccattaag gcttttgtaa acgggttgaa      1740
     ggacccaaaa gcgcaatttt tcctaaaagc gcggaaccca caaacactta ccaaggcaat      1800
     cagcgatgct ttggaagtaa acgacagcga aaccgaaacg gcaatgtggt ttgccgccgg      1860
     tccttcgcga tatcataatc aaccgaatta ttcaaatcga ggataccgaa gtaaccgagg      1920
     ttaccgaggc aaccgaaatt tcagaggtcg aggtagatct gactacaata gatccgacca      1980
     ccaaagccaa aattatgaga cgtctagttt ccgaggaaat cgaggccata ggggtaacac      2040
     gaatcaacgt tacccgtctc aacatcaaca taggggacac gttgcacacg ttgcacacgt      2100
     agcagaagcc cctcaagaaa ccagaccaaa caatcaagca cccacacaac gtccggaaca      2160
     agaagcaaat ttaattgatt tatttcgttg atttgaatca acagaaatta aaatgttcac      2220
     cgagaactat tttctcagta tttaatactg atattgtttt tattatcgat agtggtgcgt      2280
     cttgtagcat tatcgatagt agatttttgc caaataatgt taaatttcga accgatgaca      2340
     tcatttcaat aaaaggaatc aatggagtaa ccaaatcctt agggtccatt gatactattt      2400
     tacgttttgg aaacgataat tacgatatta aatttaatgt agtttcaaac ttgcctagta      2460
     atatagcagg tttaaaagga actgattttt tggtccatta tagggcaaat attgacttcg      2520
     aggcattaac attatcccta agatacagga atgacaaaca cataataccc ttgacactga      2580
     atggtactgt agcaattacg ataccagccc gaacagaaat tacaacatat gtcaaaacgc      2640
     aacatgtaaa cacatgtgta gtacttaacc aggaagttac ttcacatgtt tatattgcaa      2700
     attctattgg agaaccttca aacggattga taccagttcg gattgttaat ttcaaaaaca      2760
     aaccggtcgt tattgatcat attgcacccc acattgagcc agcttcaaat tacaatataa      2820
     ttgaattaag caaaaatgac aacaatattg ataaaaaccg agccaataaa ttgctcagag      2880
     aacttaaact aggtcacctt tctggaattg aagagaagac aattaaacag atttgtctca      2940
     aatatgcata tatcttttgt ttagaaggtg ataaacttgg aacaactaac gtttattgcc      3000
     cgacgatatc tgtcaaaccc aatagtcaac cctcctttag taaaccatat aaaattccac      3060
     attcacaaaa ggaagaagtc attaagcaag ttgagaaaat gcttaacgac gaaattatcg      3120
     aggaagcaaa atctgagtgg aacagcccct tactgcttgt tccgaaaaaa tccgaaaatg      3180
     ggaaaaataa atggagatta gtcattgact ataggaaact caatgctaat cttcaagatg      3240
     acaaatttcc gctacctaat atagaggaag taattgattc cctatcagga gcacaacatt      3300
     tcacgcattt ggacctgtcg caaggttatt atcaatgcga attgaagcct gaagacagac      3360
     atgtaacagc attttcaaca ccaactggtc aatatcaaat gactagattg cccatgggat      3420
     tgaaaataag tccctctagt ttttcacggc taatgactgt agctatgtca ggcctaaatc      3480
     ttgaaagatg tttgatatac ttagatgata ttattgtgtt cgggagaaca tttgacgaac      3540
     acaataaaaa tttgatttcc gtttttcaac gactacgaga agtcaacttg aaactcaacc      3600
     ctgctaaatg taatttcttc aagcaggagt tgatatattt agggcatttt atttcaaaag      3660
     aaggtgtact acctgttccc caaaaaattg aaacaattaa aagttagaag agtccttcat      3720
     cctcggatga agtcaagaga ttcgttgctt tcgcgaatta ttataggaag catatacgaa      3780
     actttgcgag tttatgttcg cctttgaact atttaacgcg aaagggaagc gaattcaatt      3840
     tgaattcgga atgtgaaact gcatttcaac agttgaaagc gagtttcatc aacccccctt      3900
     tgttggatta tccggatttt agtgaggaaa atacatttaa attacacact gacgcatctg      3960
     gttatggaat tggcgcagtg ttgagcaata aaaatgaaaa acctatagct tatgctagta      4020
     aaccgttgaa taacgctgag aaaaactatt caaccatcga aaaggaactt ttggcaatag      4080
     tttgggcaat tcgtcatttt cgtgcatatt tgtatgggcg aaaatttgaa ttgtatactg      4140
     accatcgccc attagtatac ctttttactc ttacagatcc ttcaagcaga ctgacgaaat      4200
     ttcgtctggc gcttgaagaa tacaactttg atgtctttta taagaaaggt tgcgagaacg      4260
     ctgtggcgga cgcgctatca cgtatctcga caactgaatt aaaagacatg cacacaaaat      4320
     tgacacaaga agcattcata accacacgaa tgcaaactcg aagagagaaa aataaaacta      4380
     atcatgaaaa gaacgtcact ggccatgaca atcctaccat gaagattatt caaatcatag      4440
     tgaaagatca tagctctgaa gaaaatgcga aatggatccc agaaaatgaa acgatactca      4500
     tcaaaccaac ggaaacattg gtttcgttac gacgaacaat gaaggaactt ggtaagattt      4560
     gtactcaaca aaatgtcgac gaattatata taaaaataaa taatcaaagt gcgcacaaat      4620
     tttatgagca gataacgagc aatgacttac aaaaagggat accaaacata ataagaatag      4680
     caagtaatat taaagtcatc gaggacgaag taaccaaaaa actgatcctt aacgactatc      4740
     atgtgttact tactgcagga catgcagggg tcaaaagaac catgaataca atcagacaaa      4800
     ggtactattg gaatggtatg aagcaagatg tacacaagtt tgtgaagtct tgtgaaaaat      4860
     gccaaaagta taagtcaata aatgtaccta aaccggaaat gacaataacg acaacagcaa      4920
     ataccgcatt tgaaaaagtt tacctagacc tcgtaggacc tttgattcct tcagaaggct      4980
     acgagtatat cttaacaact cagtgcgagt taacaaagtt cgtaaccgcc acatcaacaa      5040
     gacaacagaa acagttgcgg aggcatttgt aaaaaacgtt gtaataaaat atggagtacc      5100
     agacagaatc gcatcagaca gaggaacaga gtttatgtct gaactgttca cttcagtagc      5160
     gaaactgtta aacatcgaaa aactaaacag caccgcttac catcatcaag caataggatc      5220
     tctagaaaac actcataaat gtttaggaaa ttttttgagg acccaatgtg acaacaaact      5280
     gttttcgtgg tcaacttggg taccatacta tgaatttgcg tataacaaca caacgcactc      5340
     aacaacgaac tatactccat tttacttagt ttatggcaaa ttatcgaaaa tgccatccaa      5400
     cataatagat gctccacctg agcctattta taatgtagat gactattgca agcaattaaa      5460
     gtgcagattg caaatatgtc atagcgaagt taggaaccgt ttgatagagg agaaaacgaa      5520
     gcgaacggca gagtttaata aaactgcaga attaaagatt taccatccag gagatttagt      5580
     ttggcttaaa aatgaaacag ccaagaaact tgaagcaaag tatattagtc catacaaagt      5640
     aattgaagat ttgaatccga atcttaaaat tttaattaac aaaaaggaag atttagttca      5700
     taagagtagg gtaaaatcat atgaagaaaa agtagaagat taggttagac gtgtggtgta      5760
     taatcaagtt aagttaaatt tcaataacac catataattc tcatatattt tacaaagtat      5820
     tagaattcaa aaacattctt tattaatatt accttattac aaatacactt atatgaagta      5880
     acacagaata ttcaaatatc aaaaaagtaa aaaaacagtt acataaatga tttaaaaatt      5940
     aaacttaagc taatttttaa attttattag gtaaggcg                              5978
//
ID   Gypsy-164_AA-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   AAGE02017464;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-164_AA_;
KW   Gypsy-164_AA-I; Gypsy-164_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-277
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017464; Positions     449     173.
XX
SQ   Sequence 277 BP; 84 A; 64 C; 57 G; 72 T; 0 other;
     tgtggtgcct accagcctta ctgtttcttt tagtcgcaag atcagcataa atacgcacag        60
     tccaaagtat caacgatcgg acgattgtaa ttatgctgac ggcagcgaaa agagtcacgt       120
     agctgccaac cacactcgag taagttaaat aaacatattt ttcaattcgt tcattcttaa       180
     cgagactgta ctagcgagtg gttcttattc tgagatatca ccatgccagc gggagtagtg       240
     aagagtcccc acacaaagtg cagtgccaat cacatca                                277
//
ID   Gypsy-165B_AA-I repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-165_AA-I;
KW   Gypsy-165B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4129
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4129
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2170-2170 (2021).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus. The consensus is ~87%
CC   identical to that of Gypsy-165_AA-I.
XX
SQ   Sequence 4129 BP; 1551 A; 605 C; 720 G; 1253 T; 0 other;
     aatatcagaa gtgggatacg aaaaatgttc ctgcgaagcc gtttgaggtc ggaaaatgaa        60
     gcaccagaga atctcggaag tggtcttcct tctcaagatg ccatcaatga atccgatacg       120
     atgatcgcag gaccaagtta ttcgattagt caaattagcg gagaacgtac gcatttcaat       180
     ggatctggag atgttcaagt aactgggcaa agctgtaatg ttgaagttga gttaaaccaa       240
     gctaaaacgc acgccatcaa gttggatgaa ttatctgctt tcttgccgtt cttttcggga       300
     tcgccaaatg aagacgtgaa ttttttcatc aataccgtag agcagacaag aaaaacgttc       360
     aaggttgaag aagaagttat gaaacttata attttcaaac acctgcagaa aaacgcaaag       420
     ctttggctat cgtcacaatc aaatttgttc aacaagacat actcagaagt actcaatctt       480
     attcaaacga ccttcactgt tacaattagt gcatttgaag taagaagaaa acttgaactg       540
     cgaaagtgga gaatggagga gacatttctg gaatattttg ttgaaaaaag aagtctagcc       600
     atgccgttga aaatggatga agatgagctc attgactatg tgattgaagg tattcctgat       660
     cgtcacttga agaaccaagc caaaatgggt ggattttcat caatttcaag tctgctgaaa       720
     gcttttcaaa cgattcatct gtccaagaaa cccgtgtcaa atgctcctgt ttgcttcaat       780
     tgtaatctac ctggacatat agctgcgaaa tgtacgaggc cgcgaaaaca ctacagcaga       840
     tcaacattca aaggaactgc atccaaatgg agtcctgatg acagagggaa acttggatat       900
     gacaaaccgt caaggattgc agttgtccag aaccaagaca ttgaatacaa gacagatgac       960
     ttagagcacg acggattggt agatattacg ttgactgaat ttaaaattga tttaaaagca      1020
     ttgtttgata caggtagtcc agtttgttta atacgtcttg gtttagcgaa acgtggaaaa      1080
     attttacctt atattagtaa aaacttttac aagggtattg gaggaactgg actaaagatt      1140
     gtgggtagat tagttactaa tgtaaaaatt caaaatttat ttttcagaat taatttttta      1200
     gttgttcctg actcggttat acattcctat gacgtaataa ttggaagaga tgttattctt      1260
     gatcccatga tgaaaactat tattgaaaag agcaaaattc gcgtatttaa gaaagaaatt      1320
     aaacatgata caaacgaagc tgaaacaaag gtaaaaaata caaacattgt ttgcaatttg      1380
     aaatctgtcg agcatgtagg agatataggt aaagattatt tggcaagatt acatcatatt      1440
     ttaaaaatat attattttaa ctttcaacgt cctgtttctc ctgaagtaga ttatgaaatg      1500
     aaaatagtgc ttaaatctgc tgcaccattt cattttaagc caagaagact ttctcaaaat      1560
     gataaagcta aagtaaataa aaaagttgat gaactactaa aaatgggaat cattaaggaa      1620
     agtgattctc catttgctag tccaattgtg gttattccta agaaagatga tgaaatacga      1680
     ttgtgcgtag attatagaaa attaaataaa gatacatatc gcgataatta ccctttacca      1740
     ttgatagaag acatttttga caagcttaaa tgtaaatcag tttatacaat tttggatcta      1800
     aaatcaggtt tccatcaaat taaaattgct tctgaatgta ccaaatacac ttcttttgtt      1860
     actccaaatg gacaatatga atatttaaaa gttccttttg gcctatgtaa tgcacctgct      1920
     gtatttcaaa gatttataaa caaaattttt aaaccactca ttgatgaagg gaaaatagtt      1980
     gtatatattg atgacatatt gattgcttcc gaaactatag aagagcactt tgaaacatta      2040
     ggaatggttt taaaaatttt aagtgggaat ttattagaac taaatcttga aaaatgtaaa      2100
     ttttgttttg atgaaattga ttatttaggc tatactataa ataaatatgg aagaaaacca      2160
     agtaaatctc acattgaatc tatttccaat tttccattac caaaaagtac gaaagatgtt      2220
     caaagatttt taggtttgac tagttatttt aggaaattta taagaaattt tgcatcaatc      2280
     gccaggccac tgtacaattt gttgaaaaag gatgctgaat ttgtttttga tgaaaatgaa      2340
     gttaaagctt tcgaaatgtt aagagataaa ctgcaatcag ctccagtatt agccatttat      2400
     gatccaaaag cggaaacgca attacattgt gatgcaagct cacatggttt cggtgcgatt      2460
     cttttacaaa aacaaaataa cgggaattac caccctgtga gcttcttcag taaaaaaacg      2520
     gatgaatatg aaagtaagtt acacagcttc gaattagaaa ctctggcagt aattcattcc      2580
     ttaaaacgtt ttcatgttta tttgtctggt ataaaattta aaattttcac tgactgtaat      2640
     gctttagcac aaactttggc taaaaaagaa attaatccta aaataagtcg atgggccttg      2700
     ttcttagaaa attataatta tagtttagaa tatagagatg gaatgaaaat gcaacatgta      2760
     gatgccttaa gcagattatc aatgggtgat gttgagaaaa aatcaggaaa gcataagctg      2820
     gattacagtc aagagcagca tatatgctta ttgaatactg aggacattga acgaaatgta      2880
     attttagcac aggaacaaga tgataaaata agaaatatca aaattcactt agaatcaaat      2940
     acttttccaa atttcgaatt aaaaaatgga atattattta ggaaagataa tcaaaaactt      3000
     ttactggttg tgcctaaaac aatgattgat agtatcatac gaatatgtca tgatcaatta      3060
     gggcatattg gcatagagaa aacaataata gagattaaaa aattttattg gttttcaagc      3120
     atgagaaaaa ttgttaaaaa atatataaat aactgtttaa gttgtatatt ttatagtcca      3180
     tcagatacga aaaaagaagg atttctcaaa attatcgata aaggacaaat cccatttcac      3240
     actcttcatt tagaccatta tggtccaatt aaccaacgat catctaaaca ttttaagtac      3300
     attcttgtag tagtagatgc attcacaaaa tatgttaaat tttatcctac taaaacgact      3360
     aacactaaag aagttattga aaatttacaa ttatacatca accattatag ccgaccatta      3420
     agaattatta ctgatagagg tagttgtttt acatctacaa gtttcaaaaa cttttgtatg      3480
     gatcgttgta tcgagcatat taaaacagca gcctataccc ctgaagcgaa tggccaagct      3540
     gaaagaatca atagaacact cactcccatg ttagccaaat taattgaaga tacgaatcta      3600
     aaatgggata ttttgttacc aaatttagaa tatgtttata ataatacgta taatagggct      3660
     attaaaaatt ttccaagtat tttgcttttt ggtacacttc agaacaattc aaacaatgaa      3720
     agcaataaca tagaaacgtt agtaaaaaat aatcaacttc catcgcgaaa tcaaaatata      3780
     ttggaaattc gatcagaagc aaaagaaaat atttcaaaac ttcaggctta taataaggaa      3840
     atggtggaca gaaagcgaaa agctgttcaa aattacaaag aaggcgattt tattgtgctt      3900
     aaaactgaag ttaataataa attatcaaga aagtttaagg tccatacatc ataaagaagg      3960
     ttttgccaaa tgatcggtac tttgtcacag atatagacgg ttttcaaata tcaaatatac      4020
     cattcagttc agtttgttca ccaaataata tgcgaaaatg gctctcagat tccaatttaa      4080
     attctaatta tgacgtcgat ggggacatcg acgagtcagg atgaccgaa                  4129
//
ID   Gypsy-165B_AA-LTR repbase;    DNA;    INV; 149 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-165_AA-LTR; Gypsy-165B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-149
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-149
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2173-2173 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus. The consensus is ~85% identical
CC   to that of Gypsy-165_AA-LTR.
XX
SQ   Sequence 149 BP; 54 A; 27 C; 17 G; 51 T; 0 other;
     tatagtatgt tctattgtta attataataa ttagatacta agctactccc aatcatagta        60
     gactatgact taggataatc attgacattc tactgaccag acatcattct cgaataaact       120
     ctgaaactga taacaactgt tttactaca                                         149
//
ID   Gypsy-165_AA-I repbase;    DNA;    INV; 4099 BP.
XX
AC   AAGE02017896;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-165_AA_;
KW   Gypsy-165_AA-LTR; Gypsy-165_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4099
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017896; Positions   45856   41758.
XX
CC   Positions [3192-3668] - Integrase core
CC   'GTAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..2600
FT                 /product="Gypsy-165_AA-I_1p"
FT                 /translation="MFLRSHLRSEDEAPENLGSGLPSQDAINKPDMMNAGP
FT                 SNSNMRRKRTIVGGSGDGHVTGQNCNRVVKLDELSAFLPFFSGSPNEDANF
FT                 FISTVEQTRKTFNVEEEVMKLMVSKHLQNNAKVWLSSQSDIFTKSYSEVLN
FT                 LIQETFTVTISSFEIRRKLELRMWRTEETFLEYFIEKRNLAMPLKIDEVEL
FT                 VDYVIEGIPDRHLKNQAKMSGFTSISSLLKAFQTIRLPNNMFSSAPVCFNC
FT                 YLPGQIAAKCMRPGNHHSRATYSGAASKRSSYDGRKPGYDRPSRIAVVQNQ
FT                 DIVNKTDDLVHDGLVDITLTDFEIDLKALFDTGSPVCLIRLGLANCGKIYP
FT                 YISRKKFKGIGGTGLKIVGRLVTNIKIQNLFFRINCLIVPDSAIHPHDVII
FT                 GRDVILDSRVKTIIEKSQIRVFKKEIKNNTNEAELEVNDIVLICNLKTDEH
FT                 VGDISDDHLSRLNHILKIYYFNFQRPICPEVDYEMKIVLKSAAPFHFKPRR
FT                 LSQNDKIKVNKKIEELLKLGIIKESDSPFASPIVVIPKKDDDIRLCVDYRK
FT                 LNKDTYRDNYPLPLIEDIFDKLKSKSVYTILDLKSGFHQIKIASECTKYTS
FT                 FVTPNGQYEYLRVPFGLCNAPAVFQRFINKILKSLIDEGKIVVYIDDILIA
FT                 SETMEEHFETLRMVLEILSRNLLELNLDKCKFCFNEIDYLGYTIDKWGRKP
FT                 SKSHIESISNFPLPKTVKDVQRFLGLTSYFRKFIRNFASVARPLYDLLKKD
FT                 AEFVFNEKEIQAFEMLSDKLQSSPVLAIYDPKAETQLHCDASKRNYIVMQA
FT                 FGAILLQKHNNGNYHPVGFFSKKTDEYESKLHSFKLETLAVIHALKRFHVY
FT                 LSGIKF"
XX
SQ   Sequence 4099 BP; 1511 A; 587 C; 719 G; 1282 T; 0 other;
     aatatcagaa gtgggatatc aaaatgttcc tgcgtagcca tttgagatcg gaagatgaag        60
     ctccagagaa tctcggaagt ggtcttcctt ctcaagatgc catcaataaa cccgatatga       120
     tgaatgcagg accaagtaat tcgaatatga gaagaaaacg tacgattgtc ggtggatctg       180
     gagatggtca tgtcactggt caaaactgta atcgtgttgt caaattggat gaactttctg       240
     ctttcttgcc gttcttttcg ggatcaccaa acgaagatgc aaattttttc atcagtaccg       300
     tagaacaaac aagaaaaaca ttcaacgtag aagaagaagt tatgaagtta atggtttcca       360
     agcacctaca gaacaacgca aaggtttggc tgtcgtctca gtcagatatt ttcacgaaaa       420
     gttactcaga agttctcaat cttattcaag aaaccttcac tgtaacaata agttcatttg       480
     aaatacgaag aaaactagaa ttacggatgt ggagaacgga ggagacattt ttggaatatt       540
     ttattgaaaa acgaaatctt gccatgccgt tgaaaattga tgaagttgaa ctcgttgact       600
     acgtgattga agggattcct gatcgtcact tgaagaatca agccaaaatg agtggattta       660
     cttcaatttc aagtttactc aaagcctttc aaacgattcg tctgcccaat aacatgtttt       720
     caagtgctcc tgtttgcttc aattgctatt tacctggaca aatagctgcg aaatgtatga       780
     ggccgggaaa ccaccatagt agagcaacgt atagtggagc tgcatccaaa aggagttctt       840
     atgatggacg aaagcctgga tatgacagac cgtcccggat tgcagttgtt caaaatcaag       900
     acattgtaaa caagacagac gacttagtgc acgacggatt ggtagatatt acgttgactg       960
     attttgagat tgatttaaag gcattgtttg atacaggaag tccagtttgt ttaatacgtc      1020
     ttggtttagc aaactgtgga aaaatttatc cttatattag tagaaaaaaa ttcaagggta      1080
     ttggaggaac tggacttaag attgtgggta gattggttac taatataaaa attcaaaatt      1140
     tgtttttcag aattaattgt ttgattgttc ctgattcggc aatacatccc catgacgtaa      1200
     taattggaag agacgttatt cttgattcta gagtgaaaac aattatcgaa aagagccaaa      1260
     ttcgcgtttt caaaaaagaa attaaaaaca acacaaatga agctgaattg gaggtaaacg      1320
     atatagtttt aatttgtaat ttgaagactg atgagcatgt aggtgatata agtgatgatc      1380
     atttgtcaag attgaatcat atcttaaaaa tatattattt taactttcaa cgacctattt      1440
     gtcctgaagt agattacgaa atgaaaatag tactgaaatc tgctgcacca tttcatttta      1500
     agccgagaag actttcccaa aatgataaaa ttaaagtaaa taagaaaatt gaagagctac      1560
     tcaaattggg aatcattaaa gaaagtgatt ctccatttgc tagtcccatt gttgttattc      1620
     ctaagaaaga cgatgacata cgattgtgcg ttgattatag aaaattaaac aaggatacat      1680
     accgtgataa ttatcccttg ccgttgatag aagacatttt cgacaaatta aaaagtaaat      1740
     cagtttacac aattttggat cttaaatcgg gttttcatca aatcaaaatt gcttctgaat      1800
     gtaccaaata cacctctttt gtaactccga atggacagta tgaatattta agagttcctt      1860
     ttggcctgtg taatgcaccc gctgtatttc aaagattcat taataaaatt ttgaaatcac      1920
     ttattgatga aggaaaaata gttgtctata ttgatgacat tttaattgct tctgaaacaa      1980
     tggaagagca ctttgaaact ttaaggatgg ttctagaaat tttgagtagg aatttacttg      2040
     aactgaacct tgataaatgt aagttttgtt ttaatgaaat cgattattta ggttacacta      2100
     tagataaatg gggaaggaaa ccaagtaaat ctcatattga gtctatttcc aattttccat      2160
     taccaaaaac tgtgaaagat gttcagagat tcttaggatt aactagttat tttaggaagt      2220
     ttattagaaa ttttgcatca gttgccaggc cattgtacga tttattgaag aaagatgcag      2280
     aatttgtttt taatgaaaaa gagatccaag cttttgaaat gttaagcgac aaattacaat      2340
     catcgccagt tttagctatc tacgatccaa aagcggaaac gcaactacat tgtgatgcaa      2400
     gcaaacgcaa ctacattgtg atgcaagctt ttggtgcgat tttacttcaa aaacacaata      2460
     acggaaatta tcaccctgta ggcttcttta gtaaaaaaac tgatgaatat gaaagtaagt      2520
     tacatagctt caaattagaa acacttgctg taattcatgc tttaaaacga tttcatgttt      2580
     atttgtctgg aatcaaattc taaattttca ctgattgtaa tgctttagct caaactttgg      2640
     ctaaaaaaga aattaatcct aaaataagtc gatgggcatt gttcttagaa aattataatt      2700
     acagtttaga gtatagagaa ggaatgaaaa tgcaacatgt tgatgcttta ggtagattac      2760
     caatagatat agttgagaag aaatcagaaa aactgaaatt agattgctgt ccagagcaga      2820
     atatatgtgt attgaatact gaagatattg aactagcaca ggaacaagat gataagatta      2880
     gaaatattaa aattcactta gaatctaata cttttccaaa ctttgaaatg aaaaatggaa      2940
     tattatttag gaaagattat cagagccttc tattagttgt acccaaaaca atgatagata      3000
     atattatacg gatatgtcat gataagttag ggcacattgg tatagaaaaa acaatgattg      3060
     aaatcaaaaa attttattgg ttttcaagta tgagaaaaat tgtgaaaaaa tatataaata      3120
     attgtttaag ttgtatattt tatagtccat cagatacgaa gaaagaagga tttcttaaaa      3180
     atatttatta agatcaggtt ccatttcata ctgttcattt agaccattat ggtcctattc      3240
     agctaagatc atccaaaaat tttaaataca ttcttgtagt tgtagatgca ttcacaaaat      3300
     ttgtaaaatt ttatcctact aaaacaacaa actctagaga agttattgat aatttacaat      3360
     tatatattaa ccattatagc agaccattaa gaattgttac tgatagaggt agttgtttca      3420
     cctctacatt tttcaaaaac ttctgtatgg atcgttgtat tgagcatatt aaaacagcag      3480
     catatactcc tgaagcaaac ggccaagctg aacgaattaa tagaacactt actcctatgt      3540
     tagccaaatt aattgatgat acaaatatta aatgggatat tttacttcca aacttagaat      3600
     acgtttataa taatacattt aatagagcca ttaaaaactt tccaagtatt ttattatttg      3660
     gtacacatca aaacaatata aataatgaaa ggaataatat agaaacttta gtaaaaaaca      3720
     atcaactttt atcacaaaat caaaatacat tggaagttcg aactaaagca aaagaaaata      3780
     taacaaaact tcaggcctat aataaagaaa tggtggacag aaaacgaaaa gctgtttgta      3840
     attatagaga aggtgatttt attgtactaa aaactaatgt tgataacaaa ttatctaaaa      3900
     aatttagagg tccatatatc ataaagaaaa tattgccaaa tgatcggtac tttatcacag      3960
     acatagaggg ttttcaagtt tcaaatttac cattcagctc agtttgttca ccgaataata      4020
     tgcaaatgtg gttatcagat tctaatttaa tttcaaatta tgacgtcgat gggtacatcg      4080
     acgagtcagg ataaccgaa                                                   4099
//
ID   Gypsy-165_AA-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   AAGE02017896;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-165_AA_;
KW   Gypsy-165_AA-I; Gypsy-165_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-153
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017896; Positions   41757   41605.
XX
SQ   Sequence 153 BP; 54 A; 26 C; 22 G; 51 T; 0 other;
     tgtagaatgt tatgttataa atatgtatat aataattaga tactaagcta ccccaatcgt        60
     agtagtctat gacttaggat actctctgac atttgactga ctagacatca ttcccgaata       120
     aaccttgaaa ctgataagaa gtcttttact aca                                    153
//
ID   Gypsy-166_AA-I repbase;    DNA;    INV; 4505 BP.
XX
AC   supercont1.387;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-166_AA_;
KW   Gypsy-166_AA-LTR; Gypsy-166_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4505
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.387; Positions  239216  234712.
XX
CC   Positions [3457-3807] - Integrase core
CC   'ACTCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           994..4482
FT                 /product="Gypsy-166_AA-I_1p"
FT                 /translation="MSCVHKCKRRNHFERVCKLNKDKRKKSSKVKEIKDEN
FT                 SDPEESTSSSNEEPSEESEDEYEIGKIIDNSAKGGSVLAELELKFSKKWEA
FT                 VSCELDTGANTSLIGYDWLVKLTGKENPQLLPSTYRLQSFGGNPIKVLGEV
FT                 KIPCRRRKRRYRLVLQVVDVSHCPLLSAKASRVLGFIKFCKAVKFGRSEAN
FT                 ESDSVLRVHRMSAEKIIEDHKQIFVGYGKFDGKVSLEVDSSISPSIQSPRR
FT                 VPISMRSKLKTELELLEKEGIIIREVMHTEWVSNLVLVQRGDPESTSIRIC
FT                 LDPIPLNKALKRPNLQFATLDEILPELGRAKVFSTVDVKKGFWHVELDEAS
FT                 SKLTTFWTPFGRYRWTRLPFGISSAPEIFQMKLQEVIQGLEGVECLADDIL
FT                 VFGVGETMEEALINHNKCLTNLLVRLESQNVKLNRTKLKLCQTSVKFFGHV
FT                 LSSEGLQPDKSKVATIQNFPTPLNRKEVHRFIGMVNYLSRFLPNLSCNFTN
FT                 LRKLISESVPWLWTNIEEAEFNRVKAMVADVETLKYYNPRESLTMECDASC
FT                 FGLGVAVYQNEGVIGYASRTLSATERNYAQIEKELLAILFGCIRFDQLVVG
FT                 NPKTIVKTDHKPLINIFQKPLLSAPKRLQHMLLNLQRYNLVIEFVTGKDNV
FT                 VADTLSRAPFDDKAVNDEYSKLQIYKVFGQVEDLKLSKFLNISSSCLNEIV
FT                 KETRSDVTMQNIITLIQRGWPGSSDRVPDGVRIYFGFRDELSFQDGIVFRK
FT                 DRILVPHALRRRLIDKCHVSHNGTEATLKLARANLFWPGMSNQIKDAVQSC
FT                 PTCAKFASSQPNPPMLSHQIPVHPFQFVSMDVFFSEFRGRNQRFLVTVDHY
FT                 SDFFEVDILKDLTPESVIDVCRKNFARHGIPQTMLTDNGTNFINQKMKMFT
FT                 MEWDIEHITSAPHHQQANGKSEAAVKIAKRLLKKAEETGTDFWYALLHWRN
FT                 IPNKIGSSPVARLFSRATRCGIPTSGINLMPKVVERVPAAIEENRRKAKLN
FT                 YDRKARNLPELQTGSPVYVQVDPEVSKQWTPGIVTNRLSERSYTVNVRGGN
FT                 YRRDLVHLKPRKESSEEIVSTPISTVPTPEDENNASCLTTLGSHSQRVPNQ
FT                 QPSLSQAVVPVSSSPIRAPSLCQSPATTEAPITGGRPKRTIRIPEKLKDYV
FT                 VDFD"
XX
SQ   Sequence 4505 BP; 1354 A; 909 C; 1106 G; 1136 T; 0 other;
     tggtgtcaga agtgaacgaa tggttttaaa gtgtattttc gcgtcatcga aatcgcgatt        60
     agtaaatcat ttgtgaaaca cgaaaattga agaaactagt ttacgagtcg cgaagcgtcg       120
     gcggccattt tggaattttc tcgcgagtgt cgcgtagtgg catcgaaatt ttcgttgaaa       180
     tttactgtga agtatttatc ctcattaaaa tggatgcagc ccagtttaaa gcgctgatgg       240
     aacagcaaat gtacatgttt tctaagataa tggaaggagt gcagatgcgg tcgcataatc       300
     aagaggcaat agcgccgaag cccagttcgt caaacgtgca agttccgcag ccatcgcccc       360
     ttgttttgga aggcgatatg gacgaaaata tggatttctt tgagaagagt tggaaagatt       420
     acgctaaggc tattggaatg gatcggtggc cacaggagga aaatggtcag aaagtgagtt       480
     ttttgctctc cgtcataggg gagccggcga gaaagaaata cttcaacttt gagttgacag       540
     ctgaacaaag tgttgatcca gatactgcat tggctgccat aagggaaaag gtggtagcta       600
     agaggaacat tattgtggac cgacttgatt ttttttcgtc gatgcagcag actcgagagt       660
     ctatcgatga atttgtttct cgattgaaga ccctagcaaa gatggctaag ctcggagatt       720
     tgcaagaaga gttgatcgcc tataaagtgg tcacgtcgaa caagtggcca agtctgcgat       780
     ccaaaatgtt accgttactg atataacatt gtcgaaggcg gtggacatgt gcagagcaga       840
     ggaaattact gcgaaacgtt tccatgagtt gtcgataccg aatccggaag gggaagtgaa       900
     caagatagca aaagctaaat atcgtcaaaa ttacaaatct caagtgcaaa agtgtaagtt       960
     ctgtggtgat tatcacgact tttcacgtgg ttcatgtcct gcgttcataa atgtaaaaga      1020
     agaaatcatt ttgaaagagt gtgtaaacta aacaaggaca agcgcaagaa gtcaagcaag      1080
     gtgaaggaaa ttaaggacga gaacagtgat cctgaggaat ctacatcgtc ttccaatgaa      1140
     gaaccttcgg aggaaagcga ggacgaatac gagatcggca aaataatcga taactcggcc      1200
     aaaggaggca gcgtattggc tgagttggag cttaagtttt ccaaaaaatg ggaggcagtt      1260
     agctgtgagt tggacacagg agctaataca agcctaatcg gttacgattg gttagtcaaa      1320
     ctgaccggca aagagaatcc acagttactg ccgtctacat accgtttgca aagctttgga      1380
     ggaaacccga tcaaagtgct gggagaagtg aagattccgt gcaggcgtag gaagcggcga      1440
     taccgtttgg ttctccaggt tgtggacgtt agtcattgcc cgctcctttc ggcaaaggct      1500
     tcacgtgtgt tgggattcat caagttctgc aaggcagtta agtttgggag atctgaagct      1560
     aacgaatcgg atagtgtact gcgtgtgcac aggatgtctg ccgaaaaaat catcgaggat      1620
     cacaagcaga tttttgtggg ctatggaaaa ttcgatggga aagtttcgtt ggaagtcgat      1680
     agttccatat caccatcaat ccaatctcca cgacgagttc cgatatccat gagaagcaag      1740
     ctgaaaacag aattggaact gttagagaag gagggtataa ttatccgcga agtgatgcac      1800
     actgagtggg tcagcaactt ggtactagta caacgaggtg atccagaatc tactagcatc      1860
     agaatctgtc ttgatcccat tccactaaac aaagcgttga agagaccaaa cctacaattt      1920
     gccaccctcg acgaaatact accggagttg ggcagagcta aagtgttttc caccgtcgac      1980
     gtgaagaaag gattttggca cgtagagctc gatgaagcta gcagcaagct cacgacattt      2040
     tggacgccct ttggcagata ccgttggaca aggttaccgt tcggaatatc ttcggctcct      2100
     gaaatttttc agatgaagtt gcaagaggtt attcagggtc tcgaaggtgt ggagtgtttg      2160
     gccgatgata ttttggtgtt tggagtcggc gaaacaatgg aggaagcact catcaaccac      2220
     aacaagtgct tgacaaattt acttgttcgg ctggaatctc aaaacgtaaa actgaacagg      2280
     acaaaactca agctttgcca aacctccgtg aaattttttg gacacgtgct gtcaagtgaa      2340
     ggtcttcagc cggacaaatc aaaggttgct acgattcaaa actttcccac accactcaac      2400
     cgaaaggaag tgcaccgttt cattggaatg gttaactatt tgagccgttt cctcccaaat      2460
     ctaagctgca actttacaaa cctgcgaaag ttaatttcgg aatcggttcc atggctatgg      2520
     acgaacatcg aggaagcgga gttcaatcga gtgaaagcta tggttgccga tgtggaaact      2580
     ctgaaatact acaatcccag ggaatcattg actatggaat gtgatgcaag ttgcttcgga      2640
     ttaggagtcg cagtttacca gaatgaagga gtaattggtt atgcatcaag aacgttatcc      2700
     gcaacggaac gaaactatgc gcagattgag aaggaattgt tggcgattct gtttggatgt      2760
     attcgtttcg atcagctcgt agtgggaaat cctaaaacaa tagtaaagac ggatcacaaa      2820
     cctctcatca acatcttcca aaagcctcta ttatctgcgc caaagagact ccagcatatg      2880
     ctcctgaatc tgcaacgtta taacctggtg attgaatttg taaccgggaa agacaatgtt      2940
     gtagcggata ccctttcacg tgctcctttc gatgacaagg cagttaatga cgaatatagc      3000
     aagctgcaga tctacaaagt ttttggacaa gtcgaagatc tgaaactatc caagtttctc      3060
     aacatatcga gcagctgtct gaacgagatc gtgaaagaaa cgaggagtga tgtcacaatg      3120
     cagaacatta tcactctaat tcaacgaggt tggcctggtt catcagatcg tgttcctgat      3180
     ggagtacgga tatacttcgg ttttcgagat gaactttcct ttcaagatgg catcgtgttc      3240
     agaaaagatc gcattctggt tcctcatgct ttgcgaaggc ggctgatcga taagtgtcac      3300
     gttagtcata acggaaccga agcaacgttg aagttggcca gagcaaacct gttttggcca      3360
     ggaatgagta atcaaataaa agatgcggtc caaagttgtc ctacgtgcgc gaaatttgct      3420
     tcgtcacagc caaatccacc gatgttgagc caccaaatac cagtacatcc tttccaattt      3480
     gtctcgatgg atgttttctt cagtgagttt cgaggtcgaa atcaacggtt cctggttaca      3540
     gtcgaccact attcagattt cttcgaggta gatatcttga aagatctaac gccagaatcg      3600
     gtgattgatg tatgtagaaa aaacttcgca cgtcatggaa taccccagac catgttaacc      3660
     gataatggaa caaatttcat taatcaaaaa atgaaaatgt tcactatgga atgggacatc      3720
     gagcacatca cgtcagctcc tcatcatcaa caggccaatg gtaaatctga ggcagctgta      3780
     aagatagcaa aacgcttact caaaaaggct gaagaaaccg gaacagattt ctggtacgcg      3840
     cttttgcact ggaggaacat tcctaataaa ataggatcta gtcccgtcgc gcggttgttt      3900
     tctcgcgcca cccgctgtgg aattcctaca tctggaatta atctgatgcc gaaggtggtg      3960
     gaacgtgttc cagcagcaat cgaagagaac aggcgaaagg cgaaactgaa ttacgatcgg      4020
     aaggcaagaa acttacccga attgcagacc gggtctccgg tatatgtgca agtggatcct      4080
     gaagtctcca agcaatggac tcccggtatc gtcacaaacc gtctaagcga aaggtcctac      4140
     acagtgaacg tacgtggtgg taattatcgt cgagatttgg tccatttgaa acctcgcaag      4200
     gaaagttcgg aggaaattgt atccactccc atcagtactg tgccgacacc ggaggatgaa      4260
     aacaacgctt cttgtttgac aacattgggt tctcattccc agcgagttcc caatcagcag      4320
     ccgtcgctct ctcaggcagt ggtaccagtt tcttcctcac cgataagagc gccatcgttg      4380
     tgtcagtcac cagcaactac agaagcacca ataactggag gtcgtcccaa gcgcactatt      4440
     cgcattccag aaaagttgaa ggattatgtt gtggactttg attaatttca ttgaaacagg      4500
     gagga                                                                  4505
//
ID   Gypsy-166_AA-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   supercont1.387;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-166_AA_;
KW   Gypsy-166_AA-I; Gypsy-166_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.387; Positions  234711  234525.
XX
SQ   Sequence 187 BP; 55 A; 39 C; 35 G; 58 T; 0 other;
     tgttgcatta ttagcacacc cctatgtatg tacatccctt aagaattcat ccattcattc        60
     attcattact ttctacctga ctgtcccgtg tgggaccaga agtgtttaga gcgggagtga       120
     gtacagttcg ctacgtaata aagaagtact aacccaaagt ctagtgtgtt ttattagaca       180
     aagaaca                                                                 187
//
ID   Gypsy-167_AA-I repbase;    DNA;    INV; 7393 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   15-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-167_AA_;
KW   Gypsy-167_AA-LTR; Gypsy-167_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7393
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           402..2693
FT                 /product="Gypsy-167_AA-I_1p"
FT                 /translation="MAYASNQIGLGAYINPSDLLPDEVQYELELRGVNMSR
FT                 APLVEQRGMLRNLQLDELRSPKLIKSKKTILDELAVIQVKLITIRQEFEIQ
FT                 GVRQYLISRLRHVRLRVLRLNAINAEQEKVREDLLEEIDFLFDHFGSPDDR
FT                 TPVMVEERAAAQGGTVRIPRDPTLEFPPPPGVARSSGIATVVKSNLAGNTT
FT                 TFLGGLNRPRVAFQPSLSSGSPGLTNAAFSSHPSQGIMSIPHEEGEAANLP
FT                 AMIPPPAEELGVEVVSNEPEFPTPPLLDFNFGIEDTLHHPRASQSMPENNL
FT                 GPEGPSSHSGPPQPSAQFQSTQNFNRILDQQIPPPTADPPHESPVTPTITE
FT                 SIRLRAEVSRIVEDVLTNQLEGIMIRIAQGMQEFQSRMSQSEGRRVENVPQ
FT                 NPNPYTTVQREPLEQRVPLPGNTTTRQGPTEMPSYRIQNATSTPVPRIERE
FT                 IRPPQAPRNPSAEVHPPYNAAANLGVDTRMFQNRIPINKWPIRFSGDPKGM
FT                 SVEEFLKRVDVLARNNQVSEMELLSKANFLFRPESVAEIWYYTFSHKFASW
FT                 DTLKYHLRLRFEVPNKDKVIEREIRERKQLPNETFVTFMGEIERLCQQLSK
FT                 KMTEKTRKGILLDNMRDWYRPHLAFIDTEGISIETLCNLCYELDKSVYRSY
FT                 TQRPRPYQVHCLDEENLDDVSAQEDPEINAIARGKSREQVGVMERKETSRE
FT                 QVTSSTTPILCWNCRQFGHYWRDCAKNKRVFCHICGESDVVAMNCPSNHRS
FT                 SHIGPKNELSEGN"
FT   CDS           2765..5926
FT                 /product="Gypsy-167_AA-I_2p"
FT                 /translation="MNIQTKENRCPYVTVNILGTEVKGLLDSGAAASILSD
FT                 QNLLQKHNFKKEPTNLKIKTADGTSHECANLIYIPYSFHGTTKVVPTLYVP
FT                 NLAKKLILGNDFWKIFQITPAFEVNGYLTRLETNCVISDLVDLNCIDQYFS
FT                 EGVEINLILEQSSDRVMPVENEDVSLDLPSVEEPQPLNSSDIVTEHQLNPE
FT                 EQKELTKIIDMLKGDGKLGRTVVLEHRIEILEGEKPKRPPRYRWSPAIERE
FT                 MEKEIQRMKDLDVIEESTSDWCNPLLPVKKSSGEWRLCLDCRRINEVTKKE
FT                 AYPFPDMQVILGRIEKARYFSIIDLSKAYWQIPLAPESRDFTSFRAGKSLY
FT                 RFKVMPFGLTGAPVTQTKLMNRVLGYDLEPQVFVYLDDIVVTSRTLEEHFK
FT                 LLRTIAERLRAANLSISIEKSRFCQKRISYLGYILSEEGLSIDSKKLDPIL
FT                 NYPSPTTLKEVRRLMGMIGFYKQFIPNYSTILAPITDLLRKNRSKLIWTET
FT                 AEQALGTVKGILTSPPVLANPNFNLQFVIESDASAVAAGAVLVQYQEGVRR
FT                 PIAFFSRKFSATQRKYSATERECLAVILAIERFRHFVEGTQFRVVTDAQSL
FT                 KWLNKISVEGNSARLARWALKLQQHDILLEYRKGKLNVVADALSRAVEVDV
FT                 LSVDLDLERLKKNITAKSDQYKDFKVSHGKVYKYVPSGRSEDRRFEWKLLP
FT                 SKSERIQILQAEHGIAHLGFYKTLRRIQEKYYWPGMSVEVKRYCRGCETCM
FT                 ISKHPNHPKIPPMGRPKLASMPWQVISVDYMGPFPRSKSGNTSLLVVTDHF
FT                 SKFVLIQPMREAKTETLVKFLESMVFLLFGVPEILISDNGPQFKSLLFETL
FT                 IKKYNVSHWKNANYHPANNPTERVNRVIVAAIRSYLKGGNQKAWDENLQKV
FT                 AMAIRTAVHESTDFTPYFINHGRNYVSSGQEYAMIRNSSSDELDYDPKTLN
FT                 QEMKEIYDQVRTNLKKAYEKYSKYYNLRSRAKVSSFKVGDIVLKKNFFLSS
FT                 KANNFNAKLAQTYSPAKVIAKRGMHCYELEDLAGNNIGVFRSADLQSK"
XX
SQ   Sequence 7393 BP; 2320 A; 1540 C; 1584 G; 1949 T; 0 other;
     ttttggcgcc caacgtgggg ccctttgaaa aattaggggg cttgaatcaa tttaggaaca        60
     aattttgcat tcgaatacga ctttgatttc atttcatttc ttttcgattt cgattattct       120
     aagaatcata gtttaaggat caatactcac gtgaattaaa gaaaatcggt ttattttgta       180
     ggtttagttt ttcgtttttt ttccaagttc tttagttgaa gttatctaaa ataggggaaa       240
     agtatcgtta ggactaagaa ttgaaaaaaa attagctgga gtcttctttg atgtattttt       300
     ttctctgggt tggtttgtat tcccttttgt ttttttttgc attgattcac attgattaat       360
     ctcctttttt gaatattgaa ttgactttct atttacgtgc gatggcttac gcgagcaatc       420
     aaattggttt aggggcgtat attaacccta gtgaccttct acccgatgaa gttcaatacg       480
     aactagaact tcgaggggtg aacatgtctc gagctccttt agtcgagcaa cgaggcatgc       540
     tacgcaattt gcaattggat gagcttcgta gcccaaaact gattaaatcc aagaaaacta       600
     ttttggacga acttgcagtg attcaagtga aactgatcac cataagacaa gagtttgaga       660
     tacaaggagt acgacagtac ttgatatctc gcttacggca tgttcgtttg agagtgttac       720
     gactgaatgc catcaatgcg gaacaggaga aagttaggga agacttgtta gaggaaatcg       780
     attttctgtt cgatcatttc gggagtccag atgatcgcac acctgtgatg gtagaagaga       840
     gagcggccgc tcaaggaggg acagtgagaa ttcccaggga cccaacattg gaatttcctc       900
     cacccccagg cgttgcgcgt tcatcgggaa tcgcgactgt ggttaaatcg aacttagctg       960
     gtaacaccac gacatttttg ggtgggttaa atcgtcctcg agtcgctttt cagccgagtc      1020
     tgagctcagg atcgcctggt ctcaccaacg cagcatttag cagtcaccca tcacaaggga      1080
     tcatgtcgat cccccatgaa gaaggagaag cagcgaacct cccagcaatg atacctccac      1140
     ctgcagagga actaggggtc gaagtggtgt ctaatgagcc ggaattccca actccaccac      1200
     ttttggactt caacttcgga atcgaggata cactccatca tccgagggca tcgcaatcaa      1260
     tgccagaaaa taatcttgga cctgaaggtc cgtcaagtca ttctggacca ccccaaccat      1320
     ctgcgcaatt tcagtcgaca caaaacttca atcgcattct cgatcaacag atacctcctc      1380
     cgacagcgga tccacctcac gagagtccgg tgaccccgac aattactgaa agcataaggc      1440
     ttcgagctga ggttagtcga atagtcgaag acgttttgac taatcaactg gaaggaataa      1500
     tgatacgaat tgcccaagga atgcaggaat tccagagtag gatgtcacaa tctgaaggaa      1560
     gacgcgtaga aaacgttcct cagaatccca atccctatac aacagtccag agagaaccgt      1620
     tagaacagag agttccgtta cccggaaata ccactactcg gcaaggtcca actgaaatgc      1680
     caagctaccg tatacaaaat gcaacctcaa ctccggtacc acgaatcgaa agggaaatcc      1740
     gaccaccgca agctcctcgg aacccgtctg cggaagttca tcctccatac aatgccgcag      1800
     cgaacttagg tgtcgacacc cgaatgtttc agaaccgaat tccaattaac aagtggccga      1860
     ttaggttcag tggagaccca aaaggaatgt ccgttgagga attcctgaag agagtcgacg      1920
     tattagcacg caataatcaa gtctcggaga tggaactgct tagtaaagca aacttcctat      1980
     tccggccaga atcagtagct gaaatttggt attacacctt cagccacaag tttgcatcat      2040
     gggatacgtt gaagtaccat ttaaggcttc gtttcgaagt gcccaataag gacaaggtca      2100
     tcgaacggga gatccgagag cgaaaacaat tgccaaacga aacgttcgtc actttcatgg      2160
     gagagataga acgtttgtgt cagcaattgt cgaaaaaaat gacggagaag accaggaagg      2220
     gaattttgct cgataacatg cgtgattggt atcgacccca cttggccttc atcgacaccg      2280
     aaggaattag cattgagacc ttatgtaatc tctgctacga gttggacaaa tcggtctata      2340
     ggtcgtatac tcagcgacct agaccatacc aggtacactg ccttgatgag gagaacttgg      2400
     acgatgtttc agctcaagag gacccggaaa ttaatgccat tgcccgagga aaatcgagag      2460
     aacaagtagg agtcatggaa aggaaggaaa catcaagaga gcaagttacg tcgtctacta      2520
     cacctatctt gtgttggaat tgcagacagt ttgggcacta ttggagggat tgtgccaaaa      2580
     ataaaagagt attttgtcac atctgtggcg aatcagatgt agttgccatg aactgcccga      2640
     gtaatcaccg aagttctcat ataggtccaa aaaacgaact ctcggaaggg aattagggag      2700
     cgacccttcc aacagctcga atacgcctcc ccctccgctc gtgtatcaaa aatttgcccc      2760
     tataatgaat attcaaacga aagagaacag atgtccgtac gttacagtca atattcttgg      2820
     tacagaggtc aagggacttt tagattctgg agcggccgca agcattttaa gtgatcagaa      2880
     cctgctccaa aaacataatt ttaagaaaga gcccaccaat ctgaaaatta aaaccgcaga      2940
     tggaacatca cacgaatgtg ccaacctgat ttacattccg tactcctttc atgggactac      3000
     caaggtggtt ccaactttat atgtcccaaa tcttgctaag aaattaattc ttggcaatga      3060
     cttctggaaa atattccaaa ttacacccgc ttttgaagta aatggatatc taactcgatt      3120
     ggagactaac tgtgtaattt ctgatcttgt ggacttgaat tgtatcgacc aatattttag      3180
     cgaaggcgtt gaaatcaacc ttatccttga acaatcctcc gatagggtaa tgccggttga      3240
     aaatgaagac gtgagtttag atttaccgtc cgttgaagaa cctcaaccat tgaattcttc      3300
     agacattgtg accgaacacc agcttaaccc ggaagaacag aaagaactta cgaaaattat      3360
     cgatatgctc aaaggggatg gcaaactagg aaggacagtc gtattggaac accgaattga      3420
     aattttagag ggagaaaagc ccaagaggcc acccaggtac aggtggtcac cagctatcga      3480
     aagagaaatg gagaaagaaa ttcagcgtat gaaggattta gacgtgatcg aagaatcgac      3540
     atccgattgg tgtaaccccc tcctcccagt gaaaaagtca tctggtgaat ggaggctgtg      3600
     cctcgattgc cgtcggatca atgaggtcac taaaaaagag gcttacccat tcccagatat      3660
     gcaggtgatc ttaggtcgaa tcgaaaaagc caggtatttt tcgatcatcg acctatcaaa      3720
     agcctactgg caaatccctt tggctccgga gagccgagac tttacgtcct ttagagccgg      3780
     aaaatccttg tatcgattca aagtgatgcc gtttgggtta accggtgctc ccgtaacaca      3840
     aaccaaacta atgaaccggg ttctagggta cgatcttgaa cctcaagtct tcgtatacct      3900
     agatgatatt gttgttacat ctaggaccct cgaagagcat ttcaagttgt tacgaacaat      3960
     cgcggaacga ttgagagctg cgaatctgtc gataagtatc gaaaaatcca gattttgcca      4020
     aaaaaggata tcttatctag gttacatatt gtcggaagaa ggactctcga tcgacagcaa      4080
     aaaacttgat cccattctga actacccctc acccacaaca ctaaaggagg tcagaaggtt      4140
     gatgggcatg attggtttct acaaacaatt tatcccaaac tattctacga tcctggcacc      4200
     tattaccgat ctgctaagaa agaacagaag taagcttata tggactgaga cggcagaaca      4260
     ggcattggga actgtcaaag gaatattgac ttcaccacct gttctcgcca atccaaattt      4320
     taatttgcaa ttcgtgattg agtcagacgc gtccgcagtt gctgctggag ctgttctagt      4380
     acaatatcaa gaaggagtgc gtcgaccaat cgcctttttc tcaaggaaat tctcagcaac      4440
     acagaggaag tactccgcga cagaacgcga gtgtttggcg gtaatcctcg ccattgaacg      4500
     attcagacac ttcgtagagg gaacacagtt ccgagttgta acggatgccc agtccctaaa      4560
     atggctgaat aagatcagcg tggaaggcaa ctctgcgaga ttggctcgat gggcattaaa      4620
     gcttcaacaa cacgatatcc tcttagaata tcgaaaagga aaattaaatg tcgttgcaga      4680
     tgctctctct agagcagtag aggttgatgt actctcagta gatctcgatt tggaaaggtt      4740
     gaaaaagaac atcactgcaa aatcagatca gtataaggac ttcaaagtta gtcatggaaa      4800
     agtgtacaaa tatgttcctt cgggtcgctc ggaagataga aggtttgaat ggaagttact      4860
     tccatccaag tcagaacgga ttcaaattct tcaagcggaa catggaatcg ctcatttagg      4920
     gttctataaa acacttcgtc gaatacaaga aaagtattac tggccaggta tgagtgtgga      4980
     agttaagcga tactgtcgtg gatgtgaaac atgcatgata tccaaacatc caaaccaccc      5040
     aaaaattccc ccaatgggtc gaccaaaact cgcttccatg ccatggcagg ttatctctgt      5100
     ggactatatg ggaccattcc cacgatctaa atcaggaaat acatcacttc ttgtagtcac      5160
     cgaccacttc tcgaaattcg tccttatcca acctatgcgc gaagccaaaa cagaaacact      5220
     ggtaaagttc ctagagtcga tggtattttt actgttcggg gtccctgaga ttttaatatc      5280
     cgacaatgga cctcagttca aatcgttatt attcgaaacg ctaataaaaa agtataatgt      5340
     gagccattgg aaaaacgcga actaccaccc cgctaacaat cccacagaga gggtaaatcg      5400
     tgtcattgtt gccgctatta ggtcctattt gaagggaggc aatcaaaagg cctgggatga      5460
     aaatttgcag aaagttgcga tggctataag gactgcggta cacgagtcta ctgactttac      5520
     tccatatttt ataaaccatg gaaggaatta tgttagctct gggcaggaat acgctatgat      5580
     aaggaactct tcgtcagacg aattagatta tgatcctaaa acattgaacc aggaaatgaa      5640
     ggaaatttat gatcaagttc gcaccaatct gaaaaaggct tatgaaaagt acagcaagta      5700
     ctataatctg cgatcaagag cgaaagtctc tagcttcaag gtaggagata ttgttttaaa      5760
     gaaaaatttc tttctatcca gtaaggctaa taattttaac gccaaactgg cccaaacgta      5820
     ctcaccagcc aaagtgatag ccaaacgcgg gatgcactgc tacgagctcg aggacttagc      5880
     cggtaacaac attggagtct tcaggtcagc tgatttgcaa tccaagtgag caaattgtgt      5940
     tccagctatg acggtgttcc agcaacacat aaacaaaatt tccattgaga aagataaaat      6000
     actctttgag gcttgcttat ccaacgttga gatgtccttc gtgtttcctc cgttgtggac      6060
     aatgaatccg tttatgttaa ggatttgcac tgtattcaaa accattaaaa aaaaagccct      6120
     tacgcaccat aaacactctg ggagctgata acgctccggt attgcttgtt tacagaggtg      6180
     taaacctaca aagaaagcca tcacttttca atattcttcc tattttcttt aatcatttct      6240
     tcgtctcaat agacttcatc acttaactca ataatatcaa ggatttccca cttttcacat      6300
     ttggtttcac tcaaattgta gatcattttt gattgaactt tccgctccat atttcttctt      6360
     ccacgaatca acaacttttg ttcggacatt ctgaactagg aacaaaagtt gctaaatttt      6420
     tcaatggagt caatgacctc cgatccaatc aacccagcag cacggcaaga tagttatctc      6480
     caaccagacc cattcgctaa aaagaaaaga agaccaaatc agcctacata aggacagata      6540
     ccagttcaaa attcatgacc ttttcgaatt ccattccata gcacagtaat atttaccaat      6600
     tattcacacg taaaataatc atattactag cactttagtt ctaatttaaa cacttttcaa      6660
     acgcttcgcg acgaaccgac accatttaga ctcgcgacgg ataggtagac taactgacag      6720
     cctatcgttg ccatggaaga gagtagtgag tagtaagaga aaatgagtgg cttgaggaat      6780
     gctgtcagtt gcagagggta ccgtcgttgg gtgtaatacc ggatcacgat cagccagtat      6840
     aattatgaag gaaatagggg ggagtataag gacgatcatt tagatttttt gtgagtagct      6900
     tttcggatag ttatctgaag tagagaacca agagttccag ttcggtaccg ttcgccgagt      6960
     tgtatggttg agtggatact cgactacggg atgaagaccc ttgttgttca gattcgtttt      7020
     ttttgtggcg gatagtaatc tgcgttgatc catatacatg aagtaggatc gaagatgtgg      7080
     aaaaggaata aaataagaag aaggtctagc gcgatgtgag tgatccgtaa taacgttgta      7140
     aaaatggttc cgtgaaaaat cgaaaagctt cattgtacat agtaatctta aaaatctaat      7200
     aatatataaa gtaaaatcta agtaatcaaa catttcactt tcgcacatat ttcaactcaa      7260
     tacaataagt tgagagtcat aaacaaataa ggtaagacaa agattttgtt ttttttttgg      7320
     ttccggtcaa aatttaatac aaatatcaaa aatacatttt tcaaatatat tttttagttg      7380
     agataggggg aaa                                                         7393
//
ID   Gypsy-167_AA-LTR repbase;    DNA;    INV; 1617 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   15-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-167_AA_;
KW   Gypsy-167_AA-LTR; Gypsy-167_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1617
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1617 BP; 473 A; 352 C; 377 G; 407 T; 8 other;
     tgtaacagtg ttacaagaag aacacttggt tatcatttca taacgctatt cattcacgcc        60
     aaaaaaaaaa ataaaataaa atttaaaacc taagttgacg catgggacca gcaagggtta       120
     aacgataact tttgtacaac atgagcgccg ctagtagtgg gagattgaac cacaatttta       180
     aaccactcga ttggtaactt tgttgtgatt atttcatcac ctaagaacga tgatcatcag       240
     gctcatcagt tggactgcca actgaagagt tgtttttcta aaatacaata gacctacaga       300
     acaaaaaaaa gcggcttagc gtcggggcac aattgaaaaa taaaaactac gatcaagtct       360
     tctcagttcg gtcgttgaaa gagtcagacg ttctttagac gaaaagttga aatctaagtg       420
     gtgtcataag acgatcagaa agttaaatag gagaagttaa ggtggataaa agtgaagcta       480
     aattgattgg ccctaatgaa aagtttttga gtacaaagta aaactcctga agttacaaaa       540
     actgaaaaaa aactgcacac aattctgtag tgcaggtgca gaattccctc gaggaccagg       600
     acaccattat ccttcaagtg aaggtgtcgg tgtagggtgc aggaaatagc gacacgccgt       660
     cgttgtttct agggacgaat ccgaagcccg gcggcttgta ggcctgccct cgtcgtcgag       720
     ccagcattcg accctcgcgc atcccagggc ccaagggtat ccacgccctt aggagacgat       780
     cggtcgccaa attcgcatcg tgctccgcgg tctcgaaggg aatatcaaga ggagtcctcg       840
     ttcatggaag ctccctccat cggtgcaaag cgtgaaacca tcagcatttg aactgacagc       900
     atcgggatcg cttaaacgca atcgaagaca atcacctgcg tagttccgat cgtcgagccg       960
     ccgtgcagtt cggccatcag tcaatacgcc gccgaagtag tttggccgtc gcaccattct      1020
     gccgagggta taggtgctca ccactgagat cgggttctac cgkgggtgcc gcacaccact      1080
     cgcaacacgt tgcgacgaag gagccgtgaa gcmgccgcca ccgagtgaac tktagtgttg      1140
     cgcgacatac cgtatgtatc cccccctgct gtgacatcgt tggaatcaac cggcatgctg      1200
     ctcaaacagg tcagatctag ctgattaagt taaataccca ttcgcaaakg aacccatata      1260
     caccaatagt agttttaaga ttatwgckct atacgtttta atatccatgg ataagaagct      1320
     tttaaattcm cttaaggcct gaaatataac gtaaggaatg agaaaatttg atcgttgtcg      1380
     gkacttgaag ttataatttt gttctttcgg ttgatccttg ttttttgggt gaaattgaac      1440
     ggcaattgcc ttacgattgg ttcgggatta gtctaattaa gagaacacga ctcgccttga      1500
     ggagtctcgc tgggagatct tgctgatcca catgtgggta gacttggttt gctcacttgg      1560
     cgcataagtg gattaagttg ttatgacatt ctgacctcgt gacgcgtaac cgttaca         1617
//
ID   Gypsy-168_AA-I repbase;    DNA;    INV; 5246 BP.
XX
AC   supercont1.332;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-168_AA_;
KW   Gypsy-168_AA-LTR; Gypsy-168_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5246
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.332; Positions 1237613 1232368.
XX
CC   Positions [4037-4507] - Integrase core
CC   'CATGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           947..5083
FT                 /product="Gypsy-168_AA-I_1p"
FT                 /translation="MNKVPDEEKRDHFITLSGPTIFRELKLLYPNSNLAEV
FT                 PYKEMVDKLKARLDKTESDLVQRLKFNVRVQQPDESLEDFVLSVKLQAEFC
FT                 NFENFKQMAIRDRIVAGVRDKSLQQRLLNEEKLTLETAEKLIATWEIARNN
FT                 AKNMDYSNSTEQIASLKASGFPGARLHKLATTMEAAARANSSAKVDQSRGP
FT                 VKSRLGYSPYKKDRWQHKQWQTRSRGNGKEERNRPDYSQMVCDFCGVKGHI
FT                 KRRCFKLKNMQRDAVNMIDPDTSGSNPDDFLSNIVSRMRADSDSENDAEGE
FT                 KNVFKCMHVLSIGKISDPCLLSLKIENVFVEMEVDCGSSVTVMSKQQYFEK
FT                 FSKKLTHSQRKLVVVNGTSLVIEGEVEVLVHFKGISTKLKLLILNCENNFT
FT                 PLLGRPWLDVFFPDWRTFFVNSVGSSPQTNQPIVDEIKVKYKDVFVKNFSS
FT                 PIQGFEADLVLKSEVPIYKKAYDVPYRLRDKVLEHLTKLENEKVITPIKTS
FT                 QWASPVIVVMKKNNEIRLVIDCKVSINKFIIPNTYPLPTAQDVFAGLAGCK
FT                 VFCSLDLEGAYTQLSLSEMSKKFMVINTVKGLYTYNRLPQGASSSASIFQQ
FT                 VMDQVLNGIEHISVYLDDVLIAGKDFDDCKEKLFLVLGRLQNANIKVNWNK
FT                 CKFFVTELTHLGHVISEKGLMPCLDKIETIEKAKVPQNVTELKSFLGLINY
FT                 YHKFIPNLSSKLYYLYRLLKNDVKFCWDANCNKAFEESKHELVEAKFLEFY
FT                 DPNKPIVIVPDASGYGLGGVMAHLVEGIEKPIYFTSFSLNAAQQKYPILHL
FT                 EALALVCTVKKFHKFLFGKKFFIYTDHKPLVGIFGKEGRNSIYATRLQRFV
FT                 LELSIYDFEIQYRQSSRMGNADFCSRFPLDQAVPVECDVELVNGINFGREL
FT                 PLDFSVIASKTKEDMFLQNVISFMTKGWPTKVNKQYKDVYANQQDLELVDE
FT                 CLLYQNRVVIPVSMKIKILKLLHANHAGIVKMKRLARQCVYWFGINSDIED
FT                 YVTACDTCNSMMIVPKTKTVSKWIPTTRPFSRIHIDFFYFGHRTYLLVVDS
FT                 YSKWVEVELMRNGTNCDKVLKKLVVLFARYGLPDVLVSDGGPPFNAHSFVN
FT                 FLKRQGINVLKSPPYNPSSNGQAERLVRTVKDVLKKFLNDPEFSHLDVEDQ
FT                 INLFLINYRNSCLTSEGNYPSRLIFSYKPKTILDLINPKTHYKKFLQGGTV
FT                 HEDLTTSIKLFPGHDDINTKDCGNVPKNSIDPFENLMPGEELWYKNHNPHH
FT                 TAKWLKANFIKKHSRNTFQIQIGSVVTMAHREQLRVYRGGDSHEKPNIRVV
FT                 RRQPGADKDKDSSQEFFGFPEDEVQKEKRYVRKRKCTEKVEHTPELAPRRS
FT                 KRQRTDKRNDDFVYAK"
XX
SQ   Sequence 5246 BP; 1659 A; 869 C; 1151 G; 1567 T; 0 other;
     gttggcgacg agggtaaaag tgtatagtga aagtgctggg gaaatagtga atttcttcaa        60
     caccgacgga gtgacggacg tcattacgca gcagtagcag cagcagcaga aaatttcgtg       120
     gagtcccctt gtgagcgtga ttttccgacg gccaccatcg ctgcgattgg taattgattg       180
     tccgcttcct cgcaccgtgc agtggtgaca cttcattccg gtgtggtaag ttttgttttc       240
     gccgaaaagt taagaatttg gtgaattagg cgtgatttag tcatcggtgg cgtgagttcg       300
     acaccatttt gaacaacgag catctgctgc ttatggtttc ttattttcta ttcataaaag       360
     aaataataaa ttgacgaatt gaaaagaaat tgtatgaaac aaaggtgtca ttatattctt       420
     ttattaagag agttttttct ttttatttta ctagacagtg ataattgttc accgggatcc       480
     gccatcgctg tgcacccttc cgtgcttctg gcattccaat aaaaccatca aggctgtcgt       540
     attgaaccag ttcgatcgac ctctggatcg accgattctt cgtttatccg ccttggccat       600
     ttctggtttg taaaccttca cgtcaactga cggcttgcgt ggttgccgaa gggcgaagac       660
     cgctaacagc aaacccttat ctctaccctt gtcggcaaag gctgaaggac attccgggtg       720
     agtttttaat ccttttatct attggggaat caaaagtgca tttcattaca gtagacactg       780
     ttttctttta gaaacaattg ttcttttcgg tagttgcaac cattttcctt agattttttt       840
     tggtaaatta aaatggccca aaccaacatc aacagtacaa tagaaccttt tcgtaagggc       900
     aattcgtttg gggattggat tgaacgtttt ggggtttttt tttaacatga ataaagttcc       960
     cgacgaagaa aagcgggatc atttcattac cttaagtggc cctacaattt ttagggaact      1020
     caaattgcta taccctaata gcaatttagc tgaagttcct tataaggaaa tggttgacaa      1080
     attgaaagca cgtcttgata agaccgagtc cgatcttgta caaagattaa aatttaatgt      1140
     aagagtgcag cagccggatg aatctttaga ggatttcgta ctgtctgtca aactccaagc      1200
     agaattctgc aattttgaga acttcaaaca gatggccata cgcgaccgta ttgttgctgg      1260
     cgtccgggac aaatctctgc aacaaagatt gttaaatgag gagaagctaa cattagaaac      1320
     ggcagaaaaa ctgattgcca cttgggaaat cgccagaaat aatgctaaga atatggacta      1380
     cagcaacagt acggaacaga ttgcatcttt gaaggcttct gggtttcctg gggcaagatt      1440
     gcacaaatta gcgacgacaa tggaagcagc ggcgagggcc aattccagtg cgaaagttga      1500
     tcaatctcgt ggaccggtca aaagccgatt aggatattcc ccttacaaaa aagataggtg      1560
     gcaacacaag cagtggcaga ccagaagtcg tggaaatggc aaggaggaaa gaaaccgtcc      1620
     tgattactca cagatggtgt gcgatttttg cggtgtcaag gggcacatta aacgaaggtg      1680
     cttcaagctg aaaaatatgc aaagggatgc cgtgaatatg attgaccctg atacttctgg      1740
     ttccaacccg gacgattttt tgagtaatat tgtcagcaga atgcgagcgg attcagacag      1800
     tgagaatgat gcggagggtg agaaaaatgt ttttaaatgt atgcatgtgt tgtctattgg      1860
     caaaataagt gatccttgtc ttttgagttt gaaaattgaa aatgtttttg tggaaatgga      1920
     agtggattgt ggttcgtctg taactgttat gagcaaacaa caatattttg aaaaattttc      1980
     aaaaaaattg acgcatagtc aaagaaagct agttgttgta aatggcacga gtcttgtgat      2040
     agagggagaa gtagaagttt tagtacattt taagggaatt tcgacaaaat tgaagctttt      2100
     gatactaaac tgtgagaaca attttacgcc tttattaggt aggccatggc tggatgtgtt      2160
     tttcccagat tggaggacat tttttgtaaa ttcagtgggt tctagtccac agacaaatca      2220
     accaatagtt gatgaaatta aagttaagta caaagatgtt ttcgttaaaa atttttcgtc      2280
     cccaattcag ggttttgagg cggatttggt tttgaaatct gaagtaccga tttacaagaa      2340
     agcttacgat gtgccgtata gattacgtga taaagttttg gaacatttga cgaaattgga      2400
     aaatgaaaaa gtaataacac caattaaaac cagtcaatgg gcttctccag taattgtggt      2460
     aatgaagaag aataatgaaa taagattggt gatagattgt aaagtttcga ttaataagtt      2520
     catcattcca aacacatatc cattacccac tgctcaggat gtttttgctg gtttggctgg      2580
     ttgcaaggtt ttttgctcat tagaccttga gggtgcctat actcaattgt ctttgtcgga      2640
     aatgtccaag aagtttatgg taataaacac tgtaaaagga ctttacactt acaaccgctt      2700
     gccacaaggt gcatcatcca gtgcttcgat ttttcagcag gtgatggacc aggttttaaa      2760
     tggaattgaa catatttcgg tatatttaga tgacgttttg atcgctggaa aggacttcga      2820
     tgattgcaag gaaaagctat tcttagtact tggtagactt caaaatgcca atattaaagt      2880
     aaattggaac aaatgcaagt tttttgtaac agaactgact catttggggc atgtgattag      2940
     tgagaagggt ttaatgccat gcttagacaa aattgaaaca attgaaaaag caaaagtgcc      3000
     tcaaaatgta acagaactta agtcttttct agggttgatc aattattacc ataagttcat      3060
     cccaaatttg tcatccaagc tctattattt gtatagatta ttgaaaaatg atgtaaaatt      3120
     ttgttgggat gccaattgca ataaagcctt tgaagagagt aaacacgaat tggtggaagc      3180
     aaaatttttg gaattttatg acccaaataa accaatagtt atagtgccag atgcctcagg      3240
     atatggttta ggtggtgtaa tggcacattt agttgaagga attgaaaaac caatctattt      3300
     tacatcgttt tcattgaatg cagctcaaca aaaatatcca atccttcatt tggaagcact      3360
     agctttggtt tgtacagtga aaaagtttca taagtttttg tttggtaaaa agttttttat      3420
     ttacacagac cataagccat tagtcggaat tttcggtaaa gaaggaagaa actcgattta      3480
     tgccaccaga ctacaaagat ttgtgctaga actatcaatt tatgattttg agattcaata      3540
     tagacaatca agtcgcatgg gaaatgctga cttttgctcg cgtttccctc tagatcaggc      3600
     agttcctgtc gaatgcgatg tagaattggt caacggtatc aattttggta gggaactccc      3660
     tctcgacttt tcggtgatag ccagtaaaac gaaggaagat atgtttttac aaaatgttat      3720
     atcattcatg acaaagggtt ggccaacaaa agtaaacaag cagtacaaag acgtgtatgc      3780
     taatcagcaa gatttggaat tggtagatga atgtctgtta tatcaaaata gagtggtaat      3840
     acctgtatca atgaaaatta aaattttaaa acttttgcat gccaatcatg cgggaatcgt      3900
     taaaatgaaa cgacttgcta ggcaatgcgt gtactggttt ggaattaatt ccgacattga      3960
     ggattatgtt actgcttgtg atacttgtaa tagcatgatg atagttccaa aaacaaaaac      4020
     agtttccaaa tggataccta cgacgagacc atttagcaga attcacattg atttctttta      4080
     ctttggacac cgtacatatt tgctagtagt tgatagttac tcgaaatggg ttgaagtaga      4140
     gctaatgagg aatggcacaa attgtgataa ggttttaaag aaattagtgg tgttatttgc      4200
     tagatacgga ttaccagatg ttttggtatc agacggtggt cctccattca atgcacactc      4260
     ctttgtaaat tttctaaagc gacagggaat caatgttcta aaaagtccgc cttataatcc      4320
     atccagcaat ggacaggctg aaaggttggt gagaaccgta aaagatgtgc tcaaaaagtt      4380
     tttaaatgac ccggagttct ctcatttgga tgtcgaggat caaatcaacc tgtttttgat      4440
     caattacaga aatagctgcc tgactagtga gggaaattat ccatctcgat tgattttctc      4500
     atacaagcct aaaactattt tggatttaat aaatcctaaa actcattata aaaagttttt      4560
     acaaggagga actgttcatg aagatttaac tactagtata aaactatttc ctgggcatga      4620
     tgacattaat acgaaggact gcgggaatgt cccgaaaaac tcgatagatc ctttcgaaaa      4680
     tctgatgcct ggtgaggaat tatggtataa gaatcataac ccacatcata cagctaaatg      4740
     gctaaaggca aatttcatta aaaagcactc tcgcaatacc tttcagattc aaattggaag      4800
     cgtggtaaca atggctcatc gagaacagct tcgcgtgtat agaggtggcg attcccacga      4860
     aaaacctaac ataagggtgg tccggcgaca gccgggggca gacaaggaca aggattcgag      4920
     ccaagaattt ttcggatttc ccgaggatga ggttcagaag gagaagcgat acgtcagaaa      4980
     aaggaagtgc accgagaagg tagagcatac gccagaactt gctccgcgac gttctaaacg      5040
     acaacgaacg gacaagcgca atgatgattt tgtgtatgcg aagtagtgat agtcgtgatg      5100
     tagtcataat gattcttaag ttcgatctga atattttttt tatttgtatt tgaaattgta      5160
     attctatctg aacatgaatt aacatagctc taaatgttga ttgatattgt aatatgaatt      5220
     cgaaacttct tcaaaggggg aaggac                                           5246
//
ID   Gypsy-168_AA-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   supercont1.332;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-168_AA_;
KW   Gypsy-168_AA-I; Gypsy-168_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.332; Positions 1232367 1232063.
XX
SQ   Sequence 305 BP; 92 A; 59 C; 50 G; 104 T; 0 other;
     tgaagtgttt aatattagcg tgaacatatt acgcattcaa tagttgtttt aattaatagt        60
     gtaattccgc ttaacggaaa ccaacactat caagtgtaat gactaactga ttcacttata       120
     cgaatgcaga cgaaggtctg atcgatcata ataataaacc tacgagtcag tagattctga       180
     aacctagctg agtacagatc gcctttttat ttcattccat cacagttctc gcgctttatc       240
     tttagcctcg gttcaagtca gttgtagtta aaacgtgaaa tctttctctt ttctcggact       300
     tatca                                                                   305
//
ID   Gypsy-169_AA-I repbase;    DNA;    INV; 6053 BP.
XX
AC   supercont1.339;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-169_AA_;
KW   Gypsy-169_AA-LTR; Gypsy-169_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6053
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.339; Positions  134932  140984.
XX
CC   Positions [3347-3775] - Reverse transcriptase
CC   Positions [5045-5506] - Integrase core
CC   'CTCGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2753..5935
FT                 /product="Gypsy-169_AA-I_1p"
FT                 /translation="MVRNVEMFNVDEVKEEKLPVYNIADEENELIKCRIGG
FT                 VEIEMLIDSGSTYNLIDDTTWNLLKLKDAKFAAERHDNSKRFLAYGRVPLH
FT                 LLKVFDAVLDVRDGNETISTEATFYVIEGGQQSLLGKNTARKLGLLQVGLP
FT                 STFGKNVNQVEATKDFPKIKDFQLIQPIDHSVPPVIQPLRRCPIPILGRVK
FT                 SKLDELLQMGIIERVTKPASWVSPLVPILKDNGELRLCIDMRRANQAIQRL
FT                 NHPLPVFEDMLSRFSGAKYFTTLDIKQAFHQVELAEDSRDITTFITNWGLY
FT                 RYTRLLFGVNYAPEFFQSLMESILAECPYTVVFIDDILIWGLTEEEHDKAV
FT                 KHTLDVLHRHGLSLNVNKCKFKQAEVRFHGHMLSANGVLPSDDKMKSLLEC
FT                 RSPQNKEELRSFLGLVTYVSRFIPNLATESQPLRQLLKNSNNFQWLQQHKN
FT                 CFEKLKQRIANLKHLGYYDPKDETILVTDASGVGLGAVLVQLRDNQPRVIS
FT                 YASRSLSEAEQRYPPIEKEALGIVWGIERFKIYLIGISFTLETDHRPLEVL
FT                 FTPNSRPTARIERWMLRLQAFRFRVIYRKGSSNIADTLSRLASHVEDHSWQ
FT                 EDSDVYSRRSIATTLAELSEASEESDYDADIESTIRSIQETAAIDISEVTE
FT                 ATMNDRELQAVKEAIMSNNWSSLQLKPYSAFRTEFSFANDLVLRGSKLVIP
FT                 SVLRGRMLMLAHEGHPGQSCMKRRLRDRCWWPNMDQETVKVCEKCEGCRLV
FT                 QVPDPPEPMQRRPLPDRPWVDIAIDFLGPLPSGEYILVVVDYFSRHVDLEV
FT                 MTSITAKETIKRLDKIFRLWGIPRTITLDNAKQFVATEFEEYCRIKGIFLN
FT                 HTSPYWPQANGEVERQNRSLLKRLKIANALYGSWRTEMDRYLEMYNNTPHS
FT                 TTGKTPNELLQNRKIRSKLPDLADISTAVPSTDYADRDKIQKFAGKEREDA
FT                 HRRATLSNITAGDVVLMRNLLQTNKLSTNFLKEKFLVVERNGSNVRVQSLE
FT                 TGKSYERNVSHLKKISESAETTNEVAIPESDHSNSAAPRRPERSRQVPNRY
FT                 DSGK"
XX
SQ   Sequence 6053 BP; 1964 A; 1055 C; 1360 G; 1674 T; 0 other;
     agttggcgac gagggtaaaa gaaaaaaaaa atatcggagt gaaagcaagg caaagaatat        60
     catttattga atatattgat aatctgtgtt tccaggtaaa ataatcgaaa taaaatttca       120
     aagaatactg tgaaattgaa caaagaacgg aaagttttca tcacccacga atgtgacgcc       180
     aattatgaat gtgaagaata aggctttgtg taaaaagtga aaaacggggt acgaatatgt       240
     gatgccaatt acgcatgtga aaaaaaaatg aagccttgtg tagaaacaaa tatggagaaa       300
     cgtgattatt gataatgaat gtttggggta cgaatatgtg attgcataaa aagtgtggta       360
     atgtgaaaat gatcgaaaaa tggtagagtg ttgaatgcta ttgtatgatt atatactgtg       420
     aatttttgat catttctgtt ggtaagtgag cgaatggagg ttgactggta tcttcaattc       480
     aaggtatgtt gcccatatta atttgaaaag aatagaatgt atatacataa ttggaatgtc       540
     tcattttcgt tgatgatttg tttgcagtac tttctttcgt actggcgtac aaaatggcgt       600
     tgcagtgacc atcactaatc attcaaccaa gattagaggt ggcacaggag tatttgtgac       660
     cgaaaatcac actactctgt atgcaagaga aattattgct tattcaaacg cagccgccca       720
     tacaatcact tatctaagca gtgcgttctg taagtacgta tcaacgcgat agtagctata       780
     acgaaaaaag aagcacgcga atatgcaagc gtgctgaatc tatattccac actaacacgt       840
     gttcgcacat cgatataacc acgggaaaaa aattagcggt ttcgctttgc ggcgatgact       900
     gcgcgtaggg tggagataac atgcagttgc gctcactgcc gttgggagaa aaaaaaaacc       960
     cgaagcgaag agcgaaagag agaaagaaac agttaatctc gttctccgaa gaccgtacac      1020
     tgctgagttg agcgaggtgt ctccagataa tgctccattc cgagtgtgga tgtgattaaa      1080
     ttcactagtt tatattggca taggcaaatg agaggaatcc aataagaatg aaatgcaata      1140
     ctggttgtaa gaaggacgtg attgaattca ctgaatgaaa tgaagttatg agagaaaaag      1200
     agacggcttg atcttgaata accaagggtt gttgttagta tgaactgtga tgatgaatga      1260
     ttgccgtagg gctgtatgga ctccaatccc taacagctgg gatgtatgta tgtatgtatg      1320
     tatgtttgat tttctttttc gaatgctgct ctattttttt tttagctgta tattagggtg      1380
     attggttatg agtgtatgtc aactttgtct gtttttccaa cggaataatt atatactgtg      1440
     attgaattca ctggaacttg aatggaaaac tatggaaaac gtgatttaat tcactattga      1500
     atatacggaa aaatagaatc gatgaatgct tttgtgcaat gatgagtcaa caaggagctt      1560
     agaaactgaa agaaatgtga tttgattcac tgttgtatga atgagcttgt aaataaaaga      1620
     agaatgaaat gtgaaaataa aatgtgattt aattcactga ttagctagac cataacaggc      1680
     aatgtcaggc tgggctttga tgaaaatgat ttgatgattt ccattacagt tttgttagaa      1740
     tgatagagct attatgtttt gttcaatagg aaaatggatt cgtctgcagc agaaataatt      1800
     caagaagtac aggtgactcc agtcttcaac ccggcttcgt acaatctacc cccttttaag      1860
     tattctcatc ttccgccatc tgagataaga aatgcttgga ttggatggat acgttggttt      1920
     gaaaacgtga tgactgccac aaacattaat gatgggtatt gccgcaaagc tcaaatgctt      1980
     gcaatgggag gcttggagtt acaaaacgta ttctacggta taccaggagc tgacgaaatc      2040
     gcagttgacg accctgactt caatccatat gaaaaggcca aacagaaatt gacagaacac      2100
     ttctctccaa agcaacacga aagttttgaa cgattccagt tttggtcgat gtctatgtgc      2160
     gatgatgaac caattgagaa atttcttttg agggtacagc aaaaagccga gaaatgtttc      2220
     tttggccata ccgaacagca atgtcgacaa atcgcaatta tggacaagat tatccagaac      2280
     tcatcggaag atttgagaca gaaattatta gaaaaggaac gattaaatct tgatgatgct      2340
     acgaaaataa ttaatgcgca tcaatccata aaacagcaag catcattgat gaattctggt      2400
     tctaaggtgg atattaatcg tcttctggtg gataagcgaa aaattccata ttataagaat      2460
     agtggaatat tagcgcataa agcaagatgt acacgttgcg gtagatttca acatcgagga      2520
     agcgaaaaat gtcctgctat ggataaaact tgtcatcgtt gtcacatgaa aggacatttt      2580
     cagtcaatgt gtaaatctaa ggatggacga acagtaagag attatttttt ttccgaatag      2640
     gtgttatttc attattatgt aacatttttc ttcgtttatt tgtaaggtga caaaacggaa      2700
     tcattcgcct tataggtttg gaagtgaatc tagctattcg aagcgaggga gaatggtgag      2760
     aaatgttgag atgtttaacg ttgacgaggt taaggaggaa aagttgccag tctacaatat      2820
     cgctgatgaa gaaaatgaac ttatcaaatg tcgcatagga ggagtagaaa tagaaatgct      2880
     tatagattct ggttcaacgt acaacctaat cgatgataca acatggaatc tgttgaaatt      2940
     gaaagatgct aagtttgcag ctgagagaca tgacaattcc aagcggtttc tcgcatatgg      3000
     gcgtgtaccc ctgcaccttc taaaagtgtt cgatgcggtc ctcgatgtta gagatggaaa      3060
     cgaaacaatt tcaacagagg caacattcta cgtcattgaa ggcggtcaac agtcgttgct      3120
     agggaaaaat accgcaagaa agctaggtct tttgcaagtt ggtctgccaa gcacgtttgg      3180
     gaagaatgtc aatcaagtgg aagcaacgaa agattttcca aaaatcaaag attttcagtt      3240
     aattcaacct atcgatcact cagttcctcc cgtgattcag cctcttcgtc gttgtccgat      3300
     tcccattctt ggtagagtga agtcgaagct agatgaattg ttacaaatgg gaattatcga      3360
     acgtgttaca aaaccagctt catgggtgtc tcccctagta ccgattttga aagataatgg      3420
     tgaattgcga ttgtgcattg acatgaggcg agcaaatcaa gctatccaac gattgaacca      3480
     tcctttgccc gttttcgaag atatgctatc gagattcagt ggagcaaaat actttacgac      3540
     attggacatc aaacaggcgt tccaccaggt tgaactagcg gaagatagta gggacatcac      3600
     tacgttcata acgaactggg gactataccg ctacactcgt ctattattcg gtgttaatta      3660
     cgccccagaa tttttccaga gcctaatgga aagcatatta gcagagtgtc cctatacagt      3720
     ggttttcatt gacgacattt taatatgggg tttaacagag gaggaacatg acaaagcggt      3780
     aaagcatacg cttgatgtgc tacacagaca tggcttatca ctcaacgtca ataaatgcaa      3840
     gtttaagcaa gcagaagttc gctttcatgg acatatgttg tctgcgaacg gcgtgcttcc      3900
     ttctgatgat aagatgaagt ctctgttaga atgccgatca ccacagaaca aggaagagct      3960
     acgcagtttt cttgggcttg tcacctacgt ttcccgcttc attcccaact tggcaactga      4020
     aagtcaacct cttcgacagc ttttgaaaaa ttcgaataat tttcaatggc tacagcaaca      4080
     taagaactgt ttcgaaaaac tcaagcaacg gattgcaaat ttgaaacatc taggatatta      4140
     cgatccaaag gacgaaacaa ttctagtgac ggatgcttca ggagtaggtc tcggggcagt      4200
     tttggtccag ttgagagaca atcagccacg agtaatcagc tatgcatcgc gtagtttatc      4260
     agaagcagag caacggtatc ctccgataga gaaagaggcc ctaggaatcg tttggggtat      4320
     tgaaaggttc aagatctacc ttatcggaat atcctttact ttagaaactg atcatcgacc      4380
     gctggaggtt ttgttcacgc caaattcacg tccaacagct agaattgaac gctggatgct      4440
     gcgattgcaa gcattcaggt tcagagtcat atataggaaa ggctcgtcaa atatcgcaga      4500
     tactttgtct cggttagcgt ctcatgtaga agatcattca tggcaggaag actcagacgt      4560
     atacagtaga cggtcgattg ctacaacgtt agctgaacta tccgaagcat cagaagagtc      4620
     agattatgac gcagacatcg agagtacgat tcgatcaatc caagagacgg cagcaattga      4680
     catttccgag gtgactgagg ccactatgaa tgatagagaa ctacaggcag ttaaagaggc      4740
     tattatgtcc aataattggt catccttgca attgaaacca tattcagcgt ttcgtaccga      4800
     attttcgttt gctaatgatc tagttcttcg agggtcgaag ttagtcattc catcggtttt      4860
     gagaggccga atgctaatgc ttgctcatga agggcaccca ggtcaatctt gtatgaaaag      4920
     gcgtttacga gatagatgtt ggtggccaaa tatggaccaa gaaacggtga aagtgtgcga      4980
     aaaatgtgaa ggatgtcgat tggtacaggt tccggatccc ccagaaccaa tgcagcgcag      5040
     accgttaccg gatagaccgt gggtagatat agctatcgat tttcttggcc cactaccatc      5100
     tggagagtac attctggtag tggtcgatta ttttagcaga catgttgatc ttgaggttat      5160
     gacgagcatc actgctaagg aaactataaa aaggttagac aaaattttcc gcctttgggg      5220
     tattccgcgt actattactt tagataacgc aaaacagttc gtcgctaccg aatttgaaga      5280
     atactgccgg ataaaaggta tctttttaaa tcatacgtca ccatactggc ctcaagctaa      5340
     tggtgaagtt gaacgccaaa accgttctct tctgaagaga ttgaagatag ctaacgcgtt      5400
     gtatggttca tggcgtacag aaatggatcg atacttggag atgtataaca atacgcctca      5460
     ctcgactacc ggcaagacgc caaacgagct tcttcaaaat cgcaagatac gttcaaaact      5520
     cccagatctg gctgacattt caacagcagt tccttcgact gattacgctg atcgtgataa      5580
     aattcaaaaa tttgcgggaa aagaacgaga ggatgcacat cgtagagcaa cgctaagtaa      5640
     catcacggct ggcgatgttg tacttatgcg aaatcttctt caaacaaata aactctcgac      5700
     aaacttcctc aaggagaagt ttctagttgt agaacgcaat ggttctaacg tgagagttca      5760
     atcgttggaa acaggaaaat catacgaaag aaatgtttca cacctgaaga agatttcgga      5820
     atcagcagag acaactaatg aagtcgcgat tcctgaaagt gatcattcta atagtgcagc      5880
     accccgacga ccagaaagat cgcggcaagt acccaacaga tatgattccg gtaaataata      5940
     ggattaaaac atttatttga ttatcttgtt taactctgaa gagtaaggaa ctataataaa      6000
     tatgctatga ctcggtgata agtaataatg tctttgtttt ataaaaaggg gga             6053
//
ID   Gypsy-169_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   supercont1.339;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-169_AA_;
KW   Gypsy-169_AA-I; Gypsy-169_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.339; Positions  134769  134931.
XX
SQ   Sequence 163 BP; 44 A; 34 C; 38 G; 47 T; 0 other;
     tgtggtggac agcgcatgct ataggtatat acaacgatac tcggtaagta ccacttgtgt        60
     attagtatta acttaatgct atcgatggtc tgactaacta gcgagcgaac acagctattc       120
     attctttgag ttagacgcgt gtgccacgga tctcggtacc aca                         163
//
ID   Gypsy-16_AA-I repbase;    DNA;    INV; 2973 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_AA_;
KW   Gypsy-16_AA-LTR; Gypsy-16_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2973
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1001-1001 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [2112-2588] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1254..2810
FT                 /product="Gypsy-16_AA-I_1p"
FT                 /translation="MLKKGSSFQFDDDAVRAFNRIKEILSSYPVLQIFRPE
FT                 GDVEVHTDASKKALAGILQKADDDGKFHPCYYYSRLTNGSEKNYHSYELET
FT                 LAVVESVREFRCYLLGRKFKIITDCMAFKDSMSKKKLNPRIARWVVDLAEF
FT                 DYEVEHRRGEKMPHVDALSRANVMVVSTPIVAKIRAAQKDDEKAMKILTTM
FT                 EQGDEANGYTVYNGVLYEGDGDARRIYVPESMEMEIVRSAHERGHFGVKKV
FT                 KERINADYYIPCLDDKIKRCIATCVACIVGEKKRGKPEGELHPIPKGDVPL
FT                 DTFHVDHLGPMPSSRKSYNYILTVIDAFTKFVWLFPTKSTTAEESVKKLRV
FT                 ITDTFGNPKRIICDLGAAFTSGLFTKFCEDENIELHKIATGMPRGNGQVER
FT                 VHRIIIPMITKMAVDKPEEWFKHVTDVQKCLNNSWQRAIEMTPFQLLTGVK
FT                 MRTKEDHVLHEILQKEIQASFEEERSELRKIAQNNIQKMQEENRKHYNLRR
FT                 KCATKYKVGDTENPVRCGPESQA"
XX
SQ   Sequence 2973 BP; 888 A; 600 C; 819 G; 666 T; 0 other;
     actctaaacc ctttcgtctt acatgggggc tcgtccgggg atgagagttg ttgagacagt        60
     gttcgcgatg tgataaaagt ttgattaaat caatcgcaaa gttgaacgac ggacgattaa       120
     agatggcgga cgacgtggag attttgtgcg aaacgttgac caagttcggc attcaacgcg       180
     agtgcgaaaa acgaggtttg ccgactaccg gcaataaaaa ggctatggcg aaacgaattg       240
     tcgatcacga caaaacgacg acggctgaac aagatggcgt tcctgaaacc aacgacgagg       300
     agcaggatcg cagtcagcat gacgacgatg tgaaagttga tgacgatgac cgacgcgcgc       360
     gtgaaaaagt ttgcaccaaa aattgaagag tcggaaccgt gtgatgccaa atggatccgt       420
     cgtgtggaag agtatatcgg cgaggaagaa attgtggttc cgtacaaata tcgcgacgaa       480
     gttttgggaa tgattgagaa ttataagccg agtgaatcag taattgctgc gaacgaattg       540
     tcgattaatt tgaaggataa tgacatcgtt tgtgaaaatc cacgtcgatt ggcgcagctt       600
     gaaaaagaag tggtgaagaa gcaaatcggt gaatggatgg aaagtggcat agtgcaaccg       660
     tcagaaagtg aatacgcgag tccggttgtg gttgttccga agaaggacgg aacgtaccgc       720
     gtctgcatcg attaccgcga aataaacaaa aaagtagtgc gtgataaatt tccgatgcct       780
     aacgtagagg atcaaatcga tcagctgtcg gaggcccgtg tgtatacgac gctcgacctg       840
     aaaaattcgt actttcatgt gccggtcgaa gaaagcagcc gcaagtatac cgcgttcgta       900
     acgagtgacg ggcaatatga gttcctacga gctccgttcg gactgtgcac cagtggtaac       960
     gcgttcggac gatttatcac cacggtgttc aaagatttga ttaatgacgg gacgattttg      1020
     gcattcgtgg atgatgtcat aattccgtcc gaagatgaag aaaaaggact gtcgaacatc      1080
     tcggctatac catttacgat ggccgtgtgg aaccagcgcc tgtgaaggtc gagaagttgt      1140
     tgcagttccc gcagccgtca acagtgaagc aactgcagcg gttttatgga ttggccagct      1200
     acttcaggaa gtttgtccca gcgtttgcga agatcacccg accactttca ggtatgttga      1260
     aaaaaggaag ttcttttcag tttgatgacg atgcggtaag ggcattcaac cgcatcaagg      1320
     agattttgtc cagctaccca gtgctgcaaa ttttccgtcc tgaaggcgat gtcgaggttc      1380
     acaccgatgc cagtaaaaaa gcactggcag gtatcctgca aaaggcggac gatgatggga      1440
     aattccaccc ctgctattac tacagtcgcc taaccaatgg atccgagaag aactatcact      1500
     cttacgagct ggagacgttg gccgttgtag aatctgtgcg ggagttccga tgttatctgc      1560
     ttggtcgtaa attcaagatt atcacggact gcatggcctt caaagattca atgtcgaaga      1620
     agaagctgaa ccctcggatt gcaaggtggg tcgtggatct cgctgagttt gactacgagg      1680
     tggaacatcg ccgtggagag aagatgcctc atgtggatgc gctatccaga gcaaacgtga      1740
     tggtcgtgtc cacaccgatt gtcgctaaaa ttcgtgcggc acagaaggat gacgaaaaag      1800
     cgatgaagat tctaacgaca atggagcaag gagatgaagc caatggctac actgtgtaca      1860
     atggtgtcct gtacgaagga gatggcgatg cgagaagaat ctacgttccg gaatcgatgg      1920
     aaatggagat agttcgttct gcgcatgaga gaggacattt cggagtcaag aaggtaaagg      1980
     agagaatcaa cgcggactac tacatcccat gtttggacga caagataaag cggtgcattg      2040
     ctacgtgtgt cgcttgtata gttggtgaga agaaacgagg aaagcctgag ggtgaattac      2100
     atcccatccc gaaaggtgat gttcctttgg atactttcca tgtcgaccac ctaggtccta      2160
     tgccgtctag caggaagtca tataactata ttttgaccgt tattgacgcc tttaccaagt      2220
     tcgtatggct gttcccaacg aagtcaacaa ctgcggagga gtccgtgaag aagttacgtg      2280
     ttattaccga caccttcggt aatccgaaaa ggatcatctg cgatctaggc gctgcgttta      2340
     catcgggatt gttcacgaag ttctgcgagg atgaaaacat cgagcttcac aagattgcca      2400
     ctggaatgcc tcgtggtaat gggcaagtgg aacgagttca tcgaatcata attccaatga      2460
     tcacgaagat ggccgtggac aaaccggaag agtggttcaa gcacgtgacg gatgttcaaa      2520
     agtgtttaaa caacagttgg caaagagcga ttgaaatgac accctttcag ttgctaactg      2580
     gagtaaaaat gcgaaccaaa gaagatcacg tcctacatga aatactgcag aaggagatac      2640
     aagcaagttt cgaggaggaa agaagcgaac ttcggaagat tgcgcaaaac aacatccaga      2700
     agatgcaaga ggagaatcgc aagcattaca acttacgacg gaagtgtgca acgaagtaca      2760
     aagttggaga taccgaaaac ccagttcggt gtgggccaga aagtcaagcc taaattcttt      2820
     ggaccgtatg aaatcatcga agctctaccc aacgatcgtt atgaggtgcg aaaggtcgac      2880
     gaagaagacg aaggaccgaa gaagacgact acagctggtg acgctatcaa gccgtggaca      2940
     cttccggggc ggaagtagtg tcaggaaagg ccg                                   2973
//
ID   Gypsy-16_AA-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_AA_;
KW   Gypsy-16_AA-I; Gypsy-16_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-136
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1002-1002 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 136 BP; 37 A; 31 C; 30 G; 38 T; 0 other;
     tgtgggagga tcgggtagcc cctcggcaaa aaacttcacg aagtcagttc taacgatacc        60
     gccgtaccgg tgaacacgcg tgtgcgcgac atattatatt ttccttgaat aaagttataa       120
     tttcgatatt ctctca                                                       136
//
ID   Gypsy-16_AnFu-I repbase;    DNA;    INV; 5199 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5199
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2901-2901 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           566..1789
FT                 /product="Gypsy-16_AnFu-I_1p"
FT                 /translation="MPKKKSFDALKRTRHALSSRVVNTNTNSSSEEESSDE
FT                 SAELSHIPIETSVPSIEKLVLEDQGTKMEPDQMMQLTSQMSAIAATLDAMR
FT                 TQQINHQRMLDSLCETRPSTSYSAPQENAQAAFSMEIFFKIPDPIKAIPKY
FT                 DGNKKQLSAWISTVENTLEIFKGIVSEQQYKIFVTAVINKIEGKARDIICL
FT                 AGNPQSFEEVKQTLTSALGDRKELTYYKSILWQTKMTEHMSIHKYYNSIKE
FT                 TVQNIKTQAKLKQKYVNNWEAISAFIDEDGLAAFLAGLKEPYFGYAHAACP
FT                 EDLEAAYAFVCKFKCSESTVSNNTRFTKTFDPKEKYSKKPESSKSVQQKQF
FT                 SETTTFKGKSSYPQPMEVDSTKSKLTLNHREFHSNELTEKDKSESEDDLNI
FT                 DLNFCWASKANKIT"
FT   CDS           1738..5157
FT                 /product="Gypsy-16_AnFu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="FEHRSKFLLGQQSQQNNLNYLPYLTRENFITKQVIRL
FT                 LIDTGANKNIIRPGILTNMIPTEETVINNIYGKHVINKKCRANLIGNYVPA
FT                 QTYFELNFHPFFDGIIGSQFLAQTNAIINYKAEQIEFGKQSISYDKYYPST
FT                 KLYSYCVEVKTLNNGDWLVPTFQKFENSSIIEPGLYNSSNGKTTVKILSTK
FT                 NQIPEFSNVLNLTVNNFETITPIPFPTNSNITEEILNGIIRTSHLSNFEKK
FT                 CLFKTIIDNQNVLLKPGEKLTATSGIKHKINTTDNSPVYTKNYLYPHIYKK
FT                 DIESQISDMLDSGIIQPSTSPYSSPIWVVQKKLDASGKKKVRVVIDYRKLN
FT                 EKTINDKFPMPEIEDILDSLGKSQYFTTLDLKSGFHQIEMHPDHREKTAFS
FT                 TSYGHFEFTRMPFGLKNAPASFQRAMNNILAELIGRICYVYLDDIVIVGNS
FT                 LESHLENVSKVLERLAQFNLKIQLDKCEFLRRETEFLGHIISPEGIKANPD
FT                 KVQKILNWPLPTNEKQIRQFLGLSGYYRRFIKDYSKITKPLTKCLKKDQII
FT                 NYKDPEYIESFEKLKKTIASDQILAYPDFELPFILTTDASNFAVGAVLSQV
FT                 QNKIERPIAFASRTLNKAESNYSTIEKEALAIIWAIRKYKPYLFGNQFKLY
FT                 TDHKPLTFIKTCLKNNRILNWRLELENYQYSVEYKQGKANVVADALSRKTE
FT                 LPNEINLQTVNMTETIHSADTSDDFFIKSSERPLNYYRNQIVFEIFSENQE
FT                 SIETPFPNFRRIIVKRRKYDESTITSILRKYHNGKQTAILAPECLIQIIQQ
FT                 SFKNHFSCCGYMIMTHSQVQDVTSVEEQNRLIAKEHERAHRGINEVESQMK
FT                 RSFFFPKMHERIKSAVNTCTVCNVHKYERKPYNIKISPRPTTEKPMERVHM
FT                 DIFSINSKSFLSIVDAFSKFAQMIPIETKNLIDVKSALAKYFGSFGTPMQI
FT                 VTDHETTFRSIQLKTFLSNLGVSLTYASSSESNGQVEKTHATIIEMYNTNK
FT                 HKFVDLNTADIIAISISLYNTTVHSATGYTPNEILFNQLNNTNPIVIQEQA
FT                 QKLFTNVKTKIELSRQKQMKGNTSREEPPLIQEGQDVYVKPNIRKKLDARA
FT                 KITTAQNVKDRTFENSKNVKRHKNKINRTRAT"
XX
SQ   Sequence 5199 BP; 1964 A; 1002 C; 898 G; 1335 T; 0 other;
     ggcgctgtag cagtccagag tgcataaaca gtggaaagtg tcgatagaat tatcgatatc        60
     aaagtggtac ccgcatttag cgtcagcagc taaaggattt catccgctgt tcgatttgag       120
     ggccccccgg cacgcatacc tggaaccgga tcgtcggatt tttagccaaa gcacgtgagt       180
     acacatcatt ttttaattag tgaaagtgta ttccgttatt cctcagcact accagatagg       240
     ctaggaataa cgatagtgtt ttgtgtccac gtgtgtgtac gatagatttt ataatttatc       300
     atcgtacgca atctgttgcg atactaccag ataggtcaca cagatcatca gagaataacc       360
     cgttattctt tgtaagcgca cgcattaagc gcgttagagt ggtgcagtgt agtgtgatag       420
     tgttagtgtc aaagcacatg gtacagctcg ctactgcaac ctaacaaatt attgtgttat       480
     tcgttaggag tactaccaga tagggcctac gaggaagtaa agcaaatttt ttttttggca       540
     aagatttttt tttcgttttt atttgatgcc aaaaaagaaa tcttttgacg ctcttaaaag       600
     aacaagacac gcgcttagct cacgtgtagt gaatactaac acaaatagca gttcagaaga       660
     agagtcgagt gacgaaagtg cagaactttc tcacatccca attgaaacga gtgttccttc       720
     catagaaaag cttgttttag aagatcaagg tacaaaaatg gaaccagatc agatgatgca       780
     actaacctca caaatgagtg caattgccgc tacgctagac gcaatgcgta cgcagcaaat       840
     aaaccatcaa cgcatgttgg attctttatg cgaaacccga ccaagcacga gttacagtgc       900
     accacaagaa aatgcacaag ctgcatttag catggaaatt tttttcaaaa taccggatcc       960
     gattaaagcg attccgaagt acgacggtaa taaaaagcaa ctttctgctt ggattagtac      1020
     agtagaaaat acattagaaa ttttcaaagg gatagtttca gaacaacaat acaaaatttt      1080
     tgtaactgcc gtaattaata aaatagaagg caaagcgagg gatataattt gtttagccgg      1140
     taatcctcaa agcttcgagg aagttaaaca gacattaaca agtgctttag gtgaccgtaa      1200
     agaacttact tactacaaaa gtattctttg gcaaacaaaa atgacagaac acatgtccat      1260
     acacaaatac tataattcca ttaaagagac agtgcagaat attaaaacgc aagcgaagct      1320
     aaagcaaaaa tacgtcaata attgggaagc catcagcgct tttattgatg aggatggttt      1380
     agcggcattt ttagcaggcc ttaaagaacc atactttggt tatgcccacg ctgcatgtcc      1440
     cgaagacttg gaagcagcat acgcattcgt gtgtaaattc aagtgctccg aaagtacagt      1500
     ttcaaataat actcgtttta caaaaacttt tgatccaaaa gaaaagtact cgaaaaaacc      1560
     cgaaagtagt aaaagtgtgc aacaaaaaca gtttagcgag acaacgacat tcaaaggaaa      1620
     atcttcttat ccgcaaccca tggaagttga ttcaactaaa agtaaattaa ctttaaatca      1680
     cagagaattt cactctaatg aattgacaga aaaagacaaa tcagaatcgg aagatgattt      1740
     gaacatcgat ctaaattttt gttgggccag caaagccaac aaaataacct gaattattta      1800
     ccctacctta caagggaaaa ttttattaca aaacaagtaa ttcgattgct aattgataca      1860
     ggagcaaaca aaaatattat tcgtcctggc atattaacta acatgattcc cacagaagaa      1920
     acagtaatta ataatattta cgggaaacat gtcataaaca aaaaatgtag agctaacctt      1980
     attggaaatt atgttcccgc tcaaacgtat tttgaattaa attttcatcc atttttcgat      2040
     ggtattattg gttcccaatt ccttgcgcaa acgaatgcaa taataaatta caaagctgaa      2100
     caaattgaat ttggtaaaca aagcattagt tacgacaaat attatccgag cacaaaactt      2160
     tattcttatt gcgtagaagt taaaacttta aataatggag attggttagt ccccacattt      2220
     caaaaattcg aaaactcatc aataatagaa cccggtcttt acaactccag caatggaaaa      2280
     actacagtaa aaatcctttc gacaaaaaac caaattcctg agttttctaa tgttctaaat      2340
     ttaaccgtta ataacttcga aactataaca ccgattcctt ttccaacaaa ttcaaatatt      2400
     acagaagaaa ttttgaacgg tataatcaga acaagtcatc tgtcaaattt cgaaaaaaaa      2460
     tgcttgttta aaacaataat agacaaccaa aacgttcttt tgaaaccagg tgaaaaatta      2520
     acagccactt ctggaatcaa acataaaatt aacactaccg ataattctcc ggtatacact      2580
     aaaaattatc tctacccgca catttacaaa aaagatatag aatctcaaat aagcgatatg      2640
     ctcgattctg gcattattca gccatccact agtccttatt cctcacccat ttgggttgtg      2700
     caaaaaaaac tggatgcatc tggaaaaaag aaagtacgag tagtaataga ttacagaaag      2760
     ctgaatgaaa aaacgattaa cgataaattt ccaatgccag aaatcgaaga cattcttgat      2820
     agcttaggta aatctcaata cttcaccacg ctagatttaa agtctggatt ccaccagata      2880
     gagatgcatc cagatcaccg tgaaaaaact gcattttcta caagctatgg ccatttcgag      2940
     ttcactagaa tgccatttgg gctaaaaaat gcaccggcct catttcaacg tgcaatgaat      3000
     aacatcttag cggaactcat tggtagaatt tgttacgttt acttggacga tatcgtcata      3060
     gttggaaaca gtttagaatc acacttagaa aatgtctcga aagtgcttga acgtttagca      3120
     caattcaatc taaaaattca gttagacaag tgcgaatttt tgagaagaga aaccgaattc      3180
     ctcggtcata taatttcccc tgaaggcata aaagcaaatc ccgacaaagt acagaaaata      3240
     ttaaattggc cactacctac aaacgaaaaa caaatacgac aatttctcgg attgtccgga      3300
     tattatcgcc gctttatcaa agattattca aaaataacaa agcctttaac taaatgttta      3360
     aaaaaggatc agattataaa ttacaaagac ccagaataca tagaatcatt tgaaaaatta      3420
     aagaaaacaa tagcatccga tcagatactt gcatacccgg attttgaatt acctttcata      3480
     ctcactactg acgcaagtaa ttttgccgta ggtgcagtac tctctcaagt tcaaaataaa      3540
     atcgaaaggc caatcgcgtt cgccagtcga acactgaata aggcagaaag taattactct      3600
     actatagaaa aggaggcgct cgctataata tgggcaatac gcaaatacaa accttatctt      3660
     tttggaaatc aattcaaact ctacaccgat cataaaccgc tcacttttat taaaacttgt      3720
     ttgaaaaata atagaattct gaattggagg ctcgaattag aaaattatca atattctgta      3780
     gagtataaac aagggaaagc gaacgtagta gcagacgctc ttagcagaaa aactgaactt      3840
     cctaatgaaa ttaacctgca aactgtaaat atgaccgaaa ctatacactc agcagatacg      3900
     tcagacgatt tttttattaa gtcaagcgaa agaccattaa attattaccg taatcaaata      3960
     gtttttgaaa tattcagtga aaatcaggaa tctatagaaa caccgttccc aaattttaga      4020
     agaattattg taaaaagaag aaaatacgac gaaagtacca taaccagcat tctgcggaag      4080
     taccacaatg gaaaacaaac ggcaatatta gctccggaat gtctcataca aataattcaa      4140
     caatctttca agaatcattt tagctgctgt ggttatatga ttatgacgca ctcacaagtc      4200
     caagatgtta cgtcagttga agaacaaaac cgactaatcg caaaggaaca cgaaagggct      4260
     caccgaggca taaacgaagt cgaaagccaa atgaagagat catttttctt cccgaagatg      4320
     catgagcgaa tcaaatctgc agtcaacacg tgcaccgtat gcaatgtaca caaatacgaa      4380
     cggaagccgt ataacatcaa gatatcaccg agaccgacaa ccgaaaagcc tatggaacgt      4440
     gtacacatgg atattttctc catcaactcg aaaagtttcc tttcgatagt agacgcgttt      4500
     tcgaaatttg cgcaaatgat acccatcgaa acaaaaaact tgatagacgt taaaagtgcg      4560
     ctagctaagt attttggtag ctttggaacc ccgatgcaaa tagtaacgga tcacgaaacg      4620
     acgttcagat ccattcagct gaaaacattc ttgagcaact taggcgtttc actaacatac      4680
     gcatcatcct cagagagcaa tggacaagta gaaaaaacgc acgcgacgat aatcgaaatg      4740
     tacaacacga ataagcacaa gtttgtagac ttgaataccg cagacattat cgccatatcg      4800
     atttctttgt acaacacaac agttcattca gcaacaggct acacaccaaa cgaaatattg      4860
     ttcaatcaat tgaataacac aaacccgatt gtaatacaag aacaagcaca aaaactattc      4920
     accaatgtaa aaacgaaaat agaactatca aggcaaaaac aaatgaaagg aaacacaagc      4980
     agagaagaac caccattgat tcaagaaggt caggatgttt atgtaaaacc aaacatcaga      5040
     aaaaaattag atgccagagc aaaaataact acagcacaaa atgtgaaaga cagaacgttt      5100
     gaaaattcca aaaacgtgaa gagacataaa aataagatca atagaactag agccacttag      5160
     gtatacgtcc gaggacgtcc gtcttactcc cccgggagg                             5199
//
ID   Gypsy-16_AnFu-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2829-2829 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, often ATAT.
XX
SQ   Sequence 299 BP; 96 A; 48 C; 67 G; 88 T; 0 other;
     aattatgtgg tatagtcgta tgtggctgca ctatagcgtt actgttatac tgctggtata        60
     actgttaccg aaccagcagc gttatagtgg cagcagcagc gttgacaggt gcgcgccttc       120
     aacggaagcg gcatcgtgga gactcgctct tcttcctcaa tacgccaacg agacaggacg       180
     tactttataa cttgcgaaag attagttagg ttaaagttag gttaaaatta ggctaaaatt       240
     aggttaaagt tagattaatt tagaaataat aaaaaatgtt ataagattat aacataatt        299
//
ID   Gypsy-16_AnMe-I repbase;    DNA;    INV; 4685 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4685
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6828-6828 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..4671
FT                 /product="Gypsy-16_AnMe-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSTNENGASDGASEGESRRSPLIRPSAFTPAQPFASA
FT                 HDVNAQRLHLQPHRGPAGSSLGVPAAPSLSISPTPSLHPGEASSQEAGSSP
FT                 DGAMIYQMLQLMQKQMAQQQQMMSQLMQLHPLPQTSQPQQHSQQQSFVPQQ
FT                 QSFVPQQQPELTMDALASSISEFRYEAESDVTFSAWFSRYDDLFKQDASRL
FT                 DDAAKVRLLVRKLGTTEHSRYTSFILPRVPRDVSFQDTVSILSSLFGRAES
FT                 LVSKRYKCMKLTKAQSEDILTFICRVNRSCVDYQFSSMSENQFKCLTLVCG
FT                 LKDEADSDIRTRLLARIEERSDVTLEDLAAECQRIKSLKVDSAMIGTESRE
FT                 RVLAVHGAGMQSNQRYHRSGTQPANFRKQKSSDSGPSAKPSKPCWLCGELH
FT                 WSRDCKFKSHKCSNCGKIGHREGFCRTSGPIRRQRNFRKHRQVTSRVVTVN
FT                 ICRVNDRRKYVNLTMCGQHVSLQLDTGSDITVISRSLWQQLGKPSLVPAEV
FT                 NARTASGEELQLDGEFETSIEMAGKTREVIIRVTRANILLLGADLIDQFGL
FT                 SSLPMDSYCKMVSSSGYIKGLQAKFPTVFSGTGLCTKSRIHLQLKEDARPV
FT                 FCPKRPVAYAMIETVNKELDRLEQLNIITRVDFSEWAAPIVVVRKANGNIR
FT                 ICGDYSTGLNDALQPLEYPLPLPEDIFSKLAHSSWFSKVDLSDAFLQVEIH
FT                 EQYRPLLTINTHRGLYHYNRLPPGIKVAPAAFQQIIDRMLAGLQGTSGYMD
FT                 DVVVGGKTEEEHDENLTKLFRRLEQFGFSVRADKCSLKMRQIXYLGHVIDR
FT                 HGIRPNXAKIXAIKNLPAPTDIKGVRSFLGAVNFYGKFVPKMRELRYPLDN
FT                 LLKSDTKFAWNMQCEKAFKYFKEILSSDLLLTHYDPTAEIIVAADASSVGL
FT                 GATISHKFGDGSIKVVQHASRALTTTEEKYSQIDREGLAIVFAVTKFHKML
FT                 YGRSFRLQTDHRPLLRIFGSKKGIPVFTANRLQRFALTLQLYDFSIEYVPT
FT                 GNFGNADILSRLIRNHAKPETEYVIASLQLEEDVRSVVLNMINTFPLNFRD
FT                 IEEGTRTDSLLWKVHKYIQEGWPSDSSYGMELARFYNRKDDLSTVGDCVLF
FT                 RERVVIPRKLRMRCLNQLHRGHPGIQRMKSVARSYLYWPSIDEDIADCVSS
FT                 CTACMAVAKSPPLLEPKFWPKTTKPWERVHIDYAGPVDGAYFLIVVDAFSK
FT                 WPEVMKTITTTTTATISMLRSIFARFGMPEKLVSDNGAQFTSDTFKDYCKQ
FT                 SGIEHIKTPPFHPQSNGQAERFVDTMKRALKKIQSEDMSTETALDTFLQTY
FT                 RSTPHPALNQRTPAEVLFNRNIRIPLDLIRPTTTTHSEVDQRDDQQPPAAR
FT                 QFQPGDAVYMKHYSRNAWQWIPGMVSKRIGSVMYEIITDGHRPHRRHANQM
FT                 RARTSSGRGHLAGDSTKHQLPLDILTEVAPTPWATTPKAPIPVERNNDPSS
FT                 TSQRFSSDRSPTQQIVQPLPSASETSIRQPIQPPRRSSRLRRPPRRLDGYR
FT                 LY"
XX
SQ   Sequence 4685 BP; 1316 A; 1183 C; 1117 G; 1066 T; 3 other;
     gtggcgacga gtaaattcgg acaatttttt tttttataaa gcgacaattt ttaatctgtg        60
     aaagtgtaag tgtatgtgcg tgtgaaaatt ccccgtccac cgtctaagaa gcgcaggatg       120
     agcaccaacg aaaacggtgc atcagacgga gctagcgaag gcgaatcgcg tcgatcaccg       180
     ttgatccgcc ccagcgcttt tacaccagcg caacccttcg catccgcgca cgatgtcaat       240
     gcacaacgct tgcatctaca accgcaccga ggaccagcgg ggtcatcgct cggcgtacca       300
     gcggcgccat cgctcagcat atcgccgacg ccatcgctgc acccaggaga agcgtcatct       360
     caggaagcag gatcgtcccc agacggcgcg atgatctacc aaatgctgca attaatgcag       420
     aagcagatgg cccaacagca gcaaatgatg tcgcaattaa tgcaattgca cccgctcccg       480
     caaacgtcgc agccccagca gcattcgcag cagcagtctt tcgtcccgca gcagcagtct       540
     ttcgtcccgc agcagcagcc cgagcttacc atggatgctt tggcgagcag catttccgag       600
     tttcggtacg aggccgagtc ggacgttacg ttttccgcct ggttttcacg ttacgacgac       660
     ctgtttaagc aggacgcctc ccgactcgac gacgcggcga aagttcgttt actcgtgcgt       720
     aagctgggca cgacagagca ttcacggtat accagcttta tccttccacg agttccgcgc       780
     gatgtgagtt tccaagatac agtcagcata ttgagttcac ttttcggaag ggctgagtcg       840
     cttgtcagca aacgatacaa atgcatgaag ctgacaaaag cgcaatccga agacatactc       900
     acattcatct gccgcgtgaa ccgatcgtgc gtcgactacc agttttcgtc catgagtgag       960
     aatcagttta agtgtttgac gctcgtgtgt ggattaaagg atgaggctga ttcagacatc      1020
     cgcacacgac ttctcgcacg catcgaggaa cgaagtgacg ttactttgga ggatcttgca      1080
     gcagagtgcc agcggataaa gagcctgaag gttgacagcg cgatgattgg aacggagtcg      1140
     cgtgaacgag tccttgcagt gcacggtgca ggtatgcagt cgaaccagcg gtaccatcga      1200
     tcgggcacgc aaccagctaa tttccggaag cagaaatcga gtgattccgg accatcggcg      1260
     aaaccatcga aaccctgctg gttatgcggt gagcttcatt ggtccagaga ctgcaagttc      1320
     aaatcgcata agtgctccaa ttgtggaaaa atcggtcatc gggaagggtt ttgccgcaca      1380
     tcaggaccga taagacgaca gcgcaacttt cgaaagcacc ggcaggtaac atcacgtgtt      1440
     gtaactgtaa atatttgcag ggttaacgac agacgaaaat acgtcaacct gaccatgtgt      1500
     ggtcaacacg tgagcttgca gctagacact gggtcggaca taacagtcat cagtcgctcg      1560
     ttgtggcaac aactgggcaa accatcgtta gttccggcag aggtcaacgc taggacagca      1620
     tcgggtgagg agcttcaact cgacggtgaa ttcgaaacca gcattgaaat ggcaggtaaa      1680
     acgagggaag ttatcattcg ggtgacgcga gcaaacattt tgttgttggg tgctgatctc      1740
     atcgatcaat ttggtctcag ttcgctacca atggatagct actgcaaaat ggtatcgtca      1800
     agcggctaca tcaagggtct ccaagctaaa tttccgacag tttttagcgg tacggggcta      1860
     tgcactaaaa gccgcatcca cttgcagttg aaggaagacg ctcgacccgt gttttgtcca      1920
     aaaaggcctg tcgcttatgc catgattgag acggtcaaca aagagctgga taggttggaa      1980
     caattgaata tcatcacgcg cgtagacttt tccgaatggg cagccccgat cgtagttgta      2040
     cgaaaggcaa atggcaacat ccgcatctgt ggcgactact cgactggctt aaacgatgcg      2100
     cttcagccac tcgaatatcc attgccattg cccgaagata ttttttcgaa gcttgcgcac      2160
     agtagttggt tcagcaaagt agacctgtca gacgccttcc tccaggtcga gattcacgaa      2220
     caatatcgtc cattgcttac cattaacacc catagaggtt tataccatta taaccgcctt      2280
     cctccaggca taaaagtagc cccagccgcg ttccagcaga ttatagatag aatgctggca      2340
     ggattgcagg gaacttctgg ctatatggat gacgtggttg tcggggggaa aacagaggaa      2400
     gagcatgacg aaaatctaac gaaacttttt cgacgcctcg aacaatttgg gttttccgtc      2460
     cgagcagaca aatgctcgtt gaagatgagg caaatcsatt accttggaca cgtaatcgac      2520
     cgtcatggta tccgaccgaa tcmtgcgaaa atckaggcaa taaaaaatct tcccgcacct      2580
     actgatatca aaggcgtgcg ctctttcctc ggagcagtaa atttttacgg aaagtttgtg      2640
     ccaaaaatgc gcgaattgag gtatccgctt gataacttgc tgaaaagtga cacaaaattt      2700
     gcttggaata tgcaatgtga aaaggcattt aaatatttta aagaaatcct atcatccgat      2760
     cttctcctca cccactacga ccccaccgca gagattattg tagcagcgga tgcatcatca      2820
     gtgggactag gagccaccat ttctcacaag tttggcgatg gctcaataaa ggtcgttcag      2880
     catgcgtcac gtgctttgac aacaacggag gaaaaatata gtcaaataga tcgcgaaggg      2940
     ttggccattg tatttgccgt aactaaattt cacaagatgc tttatggtcg ttctttcagg      3000
     ctccaaaccg accaccgccc cttattacgc atcttcggct caaagaaagg catcccagta      3060
     ttcacagcga atagactgca acgctttgcg ctaacactgc agttatacga cttttcgatt      3120
     gagtacgtcc ccaccggaaa ctttggaaat gctgacattc tctcaaggct cataagaaat      3180
     cacgctaaac cggagacaga atacgtcatc gccagcctcc agctagaaga ggatgtaagg      3240
     tccgtagttc tcaacatgat taatacattc cctctcaatt tcagagacat agaggaaggg      3300
     acacggacag attccctact atggaaggtt cacaaataca tccaagaagg ctggccgtct      3360
     gactcgtcat atggaatgga gttagcacgc ttctataata gaaaggatga cctgtcgacc      3420
     gtaggtgatt gtgttctttt tagagagaga gtagtaatcc ccagaaaact acgcatgcgg      3480
     tgcttgaatc aacttcatag agggcatcca gggattcaac gcatgaagtc cgtcgctcgc      3540
     agctatttat actggccatc tattgatgag gatatagccg actgcgtttc cagctgtaca      3600
     gcatgcatgg cagtcgcaaa atcaccacct ctactagaac caaagttttg gccaaagacc      3660
     accaaaccgt gggaaagagt gcatatagac tatgcaggac cagttgatgg agcttacttt      3720
     ttgatcgtgg ttgacgcatt ctcaaagtgg cctgaagtta tgaagacaat caccacaacc      3780
     actacagcta ccatttcgat gctgcgaagc atctttgcac gttttggcat gcctgaaaaa      3840
     ctagtcagcg ataacggagc ccaatttaca agcgacacgt ttaaagatta ctgcaagcaa      3900
     agtggcattg aacatattaa aacaccgccg tttcacccac agtctaatgg gcaagcagag      3960
     cgctttgtgg atactatgaa aagagccctg aagaaaatcc aatcagagga tatgtccact      4020
     gaaacggcac tcgacacctt cctgcaaaca tatcgctcaa ctccgcaccc tgcacttaac      4080
     caacgcacgc cagctgaagt tttatttaat cgaaacatta gaattccctt agatctgata      4140
     cgcccaacta caacaacaca ttccgaagtc gaccaacgag atgatcagca accgccagca      4200
     gctagacagt ttcaacctgg agatgctgtc tatatgaaac attattcgcg caatgcttgg      4260
     cagtggattc ccggaatggt atcgaaacgg atcggaagcg taatgtacga gattatcacc      4320
     gatggacatc gccctcatcg tcgacatgcc aatcaaatgc gcgcacgtac atcgagtggc      4380
     cgaggacatc ttgccggcga ctcaactaag catcagctgc cgcttgatat tcttacggaa      4440
     gtggcaccga caccgtgggc aacgacacca aaggcaccga tacccgtgga acggaacaac      4500
     gatccgtcca gcacatcaca acgtttttct tccgataggt ccccaacgca gcagattgta      4560
     cagcctctac catctgcatc cgagaccagc atcagacagc cgatacaacc gccacgccga      4620
     tcttctaggc ttagaagacc tccgcgtagg ctcgatggat atcggctata ctaaaaaggg      4680
     ggaga                                                                  4685
//
ID   Gypsy-16_AnMe-LTR repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-315
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6853-6853 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 315 BP; 90 A; 71 C; 74 G; 80 T; 0 other;
     tgttgtgacc cgacctgccg aacttgcgat cgccgttatt gcagtcactc accgctgaca        60
     gtcctgccag cgtgttgatg tgttagtgag agcggttcgg caggataggg caatgatcgc       120
     tcgccaggcc aacgaacggg agcgatggtg ccgaacacgt tggttgtaac gcagcactta       180
     caagaacgtc ctcggtgcaa gcagtcagat tcttaataat acatttatgt taatttataa       240
     agttttaata cgtgtgcagt taatgtagat agtaacacca atattaaata tcacaaaccc       300
     cgttacaaca caaaa                                                        315
//
ID   Gypsy-16_AnSt-I repbase;    DNA;    INV; 4659 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4659
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 799-799 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4659 BP; 1165 A; 1465 C; 1105 G; 924 T; 0 other;
     actggtgacc ccgacgtgat tccttccacc gcacgtcttc gccagaacct tgttgggaac        60
     cgctcttcca ccccggagga tcaacagcag cagccaagaa ccacccggtt cctctccgta       120
     cctacactgt agcgtaccgc cccggccact cacactgtgt tgcgagtgtc gctccagctc       180
     ttgcacgctg cgctgacgat tcttattcca gcccgtgcac gctgcgctat agagtgacgc       240
     tccggaccct acccgtcaac cctacggcgg ccgtccagac acaccgctcc ttaccgccgg       300
     atttcgtccc acaccgagga caccgcatcg atttgtcgat cctacctcgc agttcttttc       360
     gtcgcagcgc gttgggatac gtaaacatcc acctcttgcg ttctcttcac cgcctccagt       420
     cagcgactac ccggggatca tccgtatcaa acgaggagga accatgccca acacgttaca       480
     tagtccacaa gacggtgtaa ccggaaacgg tagttcctca accgttacca gccccgatgc       540
     cggattcatc gcaccgccgg tgatgatcaa catacctggt gcacacgacc ccgcaaccag       600
     agtgcaggat ccagaggtgc agacgatgaa cgccttgcga ctcaagccac cggagttaag       660
     tacagccgac atccatacct ttttcttcgc cctggagaat tggttcgagg tgttgaacat       720
     tcccccccgc agtgacgcca agcggttcaa cattctaaaa acgcaaatcc cgaccagcat       780
     ccttcccgaa gtgcgacatt ttcttgaaaa tgtccccagt accgaccgtt acgaagctgc       840
     caagcggtct ttaattcagc acttcgagga atcgcagcga agccgcctac atcgtttgct       900
     gtcggagatg cacctcggcg accgccgtcc ctcgcaactg ttggccgaga tgcgacgaac       960
     ggcaaacgga gccctaacgg acctggcact agtggatttg tggatcagcc ggctaccgcc      1020
     gtatgtacaa tcagctgttc ttgccgccgc gaaggatgtc gacgacaagg tgaaagtggc      1080
     tgacgccgtg atggactcct tcgccctcta ccatcgaacc ggatcctatc caaatgtatc      1140
     ggaggtgaaa aacgacaggg ttgaacaact ctctcgcaag gtggaccagc taagcgagca      1200
     gttggaggaa gtgctgcgac agatcaacca tcgggaacac tctcgaccgc gatcccggtc      1260
     tcgaccacac agcagggcca actcaccagc accgggatcc aactccacct ggtgctatta      1320
     ccaccggaca tatggatcga aggcgcgcag ctgccaggct ccctgctcct tccacgaccg      1380
     tcgatatgga gcaaaaccgc ccccttcttc atcctgacta aaaaccgaca aggccgagcg      1440
     ggacgtccac tccttagtat ccgcaagtca tcgcctcacg gtagtggacc gtcgaacgag      1500
     acaacgcttc ctcatcgata ccggcgccga tgtttcggta attcctcgcc accacagctc      1560
     ttttccgtgt aaaccttcaa cgatgaaact atttgctgcc aatcggacac caatcgaggt      1620
     ttacggagaa tcgctataca cactggatct gggacttcgt cgcacattcc tgtggagttt      1680
     cgtgatagcg gacgtaggtt cagccatcat cggggccgat ttccttcagc acttcaacct      1740
     cttggtggac cttcgccgca agtgcctagt ggatgcgctc accaagctgt ctacacccgg      1800
     ggaaacggac cacgagctac aggaaccaac cgttaaggtt tgcgatagtt cgtcgccgtt      1860
     cgccgacctg ctgaaggagt tccccggact aaccacaacg atcgcgcccg gaacgctcct      1920
     gcgaactaac gtcacacatc ggattgaaac caccggacaa ccaacctttg cacgaccccg      1980
     aagattgtgt ccggagaagt atgctgcagc ccgtgcggaa tttgaatcgt tggttcaact      2040
     cggagtttgc cgtccatcga atagcagttg ggccagcccg ctacacatga cgaagaaagc      2100
     cgatggaagc tggcgcccct gcggagatta ccgtgccctc aacgccaaga cgatcccgga      2160
     ccgttatccg ttaccgttcc tgcaggactt tacgatgcat ttgcagggta agataatctt      2220
     ctccaagatc gacctgcaca aggcatatca ccaaatcccc ctgcacccgg aagatatccc      2280
     aaaacagcaa ttaccacccc tttcgggctt ttcgagttta cgacgatgcc cttcggcttg      2340
     agaatgctgc gcagacgttt cagcgactca tacatgacgt cttgcgaggc ctggatttcg      2400
     tctttccata catcgacgac atgatagtcg catcatcttc ggaagaggaa catcgcgagc      2460
     acctacgtct gctattccag cgtctcgagc aacatcaact ggccataaac ccagccaagt      2520
     gtgagtttgg gcgtagcgaa atcaccttcc tggggcacct ggtcaacgca gaggggatac      2580
     gccctctccc tgaacgagtg caggctataa gcgagatgaa aaaaccgacc accgtcatgg      2640
     agcttaaaaa attccttgcg atgatcaact attaccgccg gttcctacca cacgccctgg      2700
     aaacgcaagg tatcctgttg gagatgattc cggggaacaa aaagaaggac aaaacaccac      2760
     tgatatggac gtctgaagcc accgtagcat tcgaccgctg caaggaacaa ctgcaaaaag      2820
     caacgctatt ggcacatccc gcttcaaacg cagagctgtc actttggacc gacgcctcgg      2880
     actttgccgc tggagccgtt ctacaccaac acgtcgacgg acaacttcag cccctaggat      2940
     tcttctcaaa gaaattcgag aaagcgcagc tgaagtattc gacttacgac cgtgagttga      3000
     ccgctgttta cctcgccgtg cgacattttc gctacctgtt ggagggtcgt gaattccgaa      3060
     tctacacgga tcacaagcct ctaacgtacg cgttccggca aacacacgac agcgcatcac      3120
     cgcgacgtgc ccgacagctg gacttcatcg ggcaatttac caccgacatc cggcacgtag      3180
     caggggagga caacgtaacc gccgacctcc tttcacgcat tgaaacggta cacgcaactc      3240
     ctaccatcga cttcgagcgc ctagctgagg agcaaaccag cgatcctgag ctatcggata      3300
     tcctcagtgg gaagacacct tccgacttat tcctccagaa gacacctatc cctgggtcca      3360
     gcaagtcact gtatgccgac tgccctggag gaataatccg accatacatc acgaggtcat      3420
     ttcggaaaca gcttctacat gccgtccacg accttagcca tcctggagca cgagccacag      3480
     tcaaattgat gacgcaacga ttcgtttggc tgaacatcaa aagggagacc caggagtttg      3540
     taaggagctg tatcgcttgc caacgagcca aagtaggacg tcatacaaag agccctctag      3600
     caacatatcc gacaaccgcc gcaaggttct cgcacatcaa cgtggacatc atcgggccct      3660
     tcccggtcag caacggcaac cgttactgcc tgaccatcat cgaccgcttt tcccgttggc      3720
     cggaagcagt accgatcccg gacatgactg catcgactgt cgtttcggca ctgctcttcc      3780
     actggatcgc ccgattcgga gttccctctc acgtgactac ggatcaagga aggcagttcg      3840
     aatcttcctt gttcaaagaa ctgacacgag tgctcggagt gaaacatatc cggacgaccg      3900
     cctatcatcc ccaggccaac gggctgatcg agagatggca tcgcactctg aaagcagcca      3960
     tctgctgcaa ggatacgacc cgatggagtg agcatctacc actgattctg ctagggctac      4020
     gcaccaccta caaggaagac attggagcat caccggcaga actcgtatac gggacaacac      4080
     tcaccatccc cgccgaattc gtcgctgaga agccaccacc acccgaccaa agcgacttcg      4140
     ctgagacact acgggaagcg atgagcaaca ttcgaccaac gaaaaccgct tggcatacca      4200
     atcggaccgc atttgtacac gccgatctta acaaatgcac tcacgtgttt gtgcgcaacg      4260
     acaccgtccg gccagcgctg actacaccgt accagggacc ataccggata ctacagcgaa      4320
     gtccaaagtc cttccagatt ctggtaaatg gacaaacctc gtgggtatcc atcgatcgcc      4380
     tgaagccagc ttacatcgcc gaagatccac ccgagtcggc tcggaaacga acaccatcag      4440
     cggatataac accatcgacc gagcagccgt ctctaacgca ggagccgacg tccagtccag      4500
     catcacggca gacagctgtt ccaaccgcca tccgcaaccc acctccgccg atcttacgac      4560
     aacggactga cgacaacata tcgaccggcg ttacgagatc acagcgtaga gtcataattc      4620
     ctcttcgcta tcgataacac cggtctagga ggggagtac                             4659
//
ID   Gypsy-16_AnSt-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-438
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 812-812 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 438 BP; 149 A; 110 C; 119 G; 60 T; 0 other;
     tgtagcgact gagcgtccta ggctcgaaac gcgttacaga gaaatagcca ggacccaaac        60
     actcgcggaa cgccatctat ggggaaacgc aagaaatacg agttctcgaa ggatcgggaa       120
     cccgccacgc gaggcgggcc agacgatcgt ggaagattcg ggaatccgac acgagaaggc       180
     ggatacaaag cgccagaagg ttctggatac ggacaccaga gtataaaaac ggtgccatat       240
     ccaaaccagg atcagtatcg ttccatccgc gacgaggatc acatctcctg gaggaccaac       300
     cgaggaagta ggaaagaaga ccgctctcaa cgcacaatcg agacgaaaag aaggaagacc       360
     gctccagctc taactcaaga aggcaacggg aaggaaggat aaataaaaat taggactccg       420
     taccggacca ttcctaaa                                                     438
//
ID   Gypsy-16_BTa-I repbase;    DNA;    INV; 5175 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5175
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 680-680 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~97% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(662..943,907..1860,1864..2106)
FT                 /product="Gypsy-16_BTa-I_1p"
FT                 /translation="MRGRKSPDIINLDDSFGLNFAKDIAHSPTIDENILIP
FT                 HPPPLPPPDFLKPPRRSNRLLKVKPPVYVIRRKPEAKRKKVMPVDRSPPNQ
FT                 TNPTRIPKPSKPNQPNPNMNVNFNAQNASNNANVKETEDINLPLENFSLIL
FT                 PEKFTGSNITIEKFLESVEAAIKVNKWNKDYLPLFIQKYLSGAALQYLKFL
FT                 KTEHPVLENNTFKVKFKEQFADTSRVSRLNLQLQNLKLESDDLLREYSYKV
FT                 RTLCKKIDPNMSEDQIIFHLIKGLPLATKTIFSLFLHSTLTEFDNSVDLYL
FT                 QKQLHLNIDIPEVTQPVVKEVQTSQLTEILNKISGFEEKLENLKESNKQNF
FT                 KKPKKPKPNQSNQATNQPHFGNGELINNFRLRFPYQNPNRRRSNYYPNPGY
FT                 YDNNFNHFRLQHFNNQGFPHYNDPRFQYSHNNYPIQTQNPPVPQAQNGSDQ
FT                 GSNNSTTCSICALNPPTELCRVRYCRSCKKFDHVATSCFKNNGDQNFQ"
FT   CDS           join(2415..2486,2380..2754,2758..3003,3007..3906)
FT                 /product="Gypsy-16_BTa-I_2p"
FT                 /translation="MLNSPCKPCLISKRKTFNITNSKQILLRYSNASVNVC
FT                 SIALANHVLSARGKPLILQTANNESLPIIKKGFLCVNINNHPFKISVHVTK
FT                 SLSSPLILGDTFLSQAKAIINYHARTVSLSNNDITFSIALTNRKADKLSSI
FT                 QTPLDLPVTAITTILEPQCVMNVLMKCDVPPFLTNLFFYPNVELYNSNNIY
FT                 MNNCRLRTNFIPVKNFSFNNIIINDYTKLGSISLDKNLEYYKMNTAEKASI
FT                 LSISACDFNNCDFLLNVNCSIRKSSPANRKNTVKTAFSQNTYTYAARTARN
FT                 PCVAQTNAIKMASLRGRINTLNVSRKVHATRIANQSMCIKRIIKKPKLSIS
FT                 NLTQVRNYYDRKSMYDFIPTEHHTIACISSEDCTNVNSEVINPENILPTDN
FT                 SGTPISIDRSLPVSIFQKIKNIIENSKEIFASKNIELKKACILPAEINLTD
FT                 DIPVHSPPFHQSPIEDEQIHEIISELKSIDVIGESTSPYASPAFLVVKPGV
FT                 DKTVSTKLSAADKRLVVDFRKLIKKLSPIGTLSPG"
XX
SQ   Sequence 5175 BP; 1798 A; 1074 C; 749 G; 1554 T; 0 other;
     ccgaaaccag cctgacttcg acctgcacaa caccagcttg tccagctcaa ggcttactga        60
     accagattcc cagcatacga agacgaggac ctcaacaacc aaagaagttg aagagaggaa       120
     aagaattcac tcgaagaaca cgagacgctc taatcaatcc atccaaatca aggacaaaga       180
     ccggaccacg ccgcgccgtc tatcaacagg tcatgcatac ttttctcact atcaatgtcc       240
     cttaccgatt ttagccttct tttaacatat tttcaacgtt tttattgctc ttttaacatt       300
     tcatgaacgt attcacattt taacatttta cggacatgtt caatgttctt ttaactttta       360
     tcgaaatttt atagtttcgt cgtttttcta attattatca tagtgccctg aaacctcaag       420
     gaaattacat accaaagaaa gttactaagg ctattttatc attttaacca tattttatct       480
     acatttcact atcaaatttt aatatttttt agccaaagct aatgtccgaa taatcataaa       540
     atgaaccacc ctccttcggt catcagaaat acgaacagta aattcctctg tgcaatgcct       600
     tactttctaa cattttaatt agatctcaaa ttcgagaaat attaaaatgt taaatccata       660
     aatgagaggt cgtaagtcgc cggacattat caatcttgat gattctttcg gacttaattt       720
     tgccaaggat atcgcgcatt cgccaactat tgatgaaaat attttaatcc ctcacccacc       780
     tccattgcct cctcctgatt ttttaaaacc cccgaggcgc tctaatagat tattaaaagt       840
     caaaccccct gtatatgtaa tcagaagaaa gcccgaggca aagcgaaaaa aagtaatgcc       900
     tgttgaccga agccctccaa accaaaccaa cccaacccga atatgaatgt caactttaac       960
     gcacagaatg cctctaataa tgcaaatgtg aaagaaactg aggacataaa tttaccgtta      1020
     gaaaatttct ccctaattct cccagaaaaa tttacaggat caaatattac cattgaaaag      1080
     ttcctagagt ctgtggaagc agcgattaaa gttaacaaat ggaacaaaga ttatcttcct      1140
     ctctttatcc aaaaatattt gtcaggagcg gcccttcagt atttaaaatt tttaaaaacc      1200
     gaacaccctg tactagaaaa caatactttc aaggtcaaat tcaaagagca gttcgctgat      1260
     acttctagag taagcaggct taacctgcaa ctacagaact tgaaattgga atcggatgat      1320
     ttattaagag aatattcata taaagtaaga accctatgta agaaaattga cccaaacatg      1380
     tcagaagatc aaataatttt tcatcttata aaaggtttac ccttagcaac caagacaata      1440
     ttttctttgt ttctccacag tacgttgacg gaatttgata actcagtaga tctttatctg      1500
     caaaaacaat tacatcttaa tattgacatc cctgaagtca cacaaccagt ggtaaaagaa      1560
     gtccaaacct ctcagttgac tgaaattctt aataaaattt ctggttttga agaaaagtta      1620
     gaaaacctta aagaaagcaa caagcaaaat tttaaaaagc cgaaaaaacc taaacccaat      1680
     caatccaacc aagcaacaaa ccaaccccac ttcggaaacg gagaacttat taacaatttt      1740
     agactgagat ttccatatca aaatcccaat agaagaagga gtaattatta cccaaatccc      1800
     ggttattacg ataacaattt caatcatttc agactgcaac attttaataa ccaagggttc      1860
     tgaccacatt acaacgaccc tcgattccaa tattctcata ataattatcc tatccaaacc      1920
     caaaatcccc ccgttcctca ggcacaaaat ggatccgatc aaggttctaa taattccaca      1980
     acatgttcaa tttgcgcctt aaatcccccc acggaattat gtagagttag atattgccga      2040
     tcttgcaaaa aattcgacca cgttgccaca tcgtgcttta aaaataacgg tgaccaaaat      2100
     ttccagtgag tggtatcaag cagcaatctt aaaagctttt gagggagcat tgttattgta      2160
     accaaaagtc attagttcaa tcagagtgca aattacttga caatgataat aagaatttcc      2220
     cgcctttacc cacccaagaa aaatcagctc caagaaaggt caaacatcca aagtcacggc      2280
     aagtcccaag ctttagtgct ctgatatcag acaaaagcag agtctgtaca ttatcatcaa      2340
     acttatccac gtttataccg gtaaaaattc agaatgtaga tactattgcg ttacagcaat      2400
     gccagtgtaa atgtatgctc aatagccctt gcaaaccatg tcttatcagc aagaggaaaa      2460
     cctttaatat tacaaacagc aaacaatgaa agtttaccga tcattaaaaa gggattctta      2520
     tgtgtgaaca tcaataacca cccatttaaa atttctgttc atgtgaccaa atcgctatcc      2580
     tcccctttaa ttcttggaga cacattttta agccaagcga aagccattat taattatcat      2640
     gctcgcaccg tttcgctaag caacaatgac atcactttct caatcgcttt aacaaataga      2700
     aaagcggaca aactgtcatc cattcaaacc ccgcttgact taccagtaac tgcttagatt      2760
     accacgattt tagaacctca atgtgtaatg aatgttctta tgaagtgtga tgttcccccg      2820
     tttttaacaa atctattttt ttatccaaat gttgaactgt ataattctaa caatatctat      2880
     atgaataatt gtcgtttgcg aacaaatttt atcccagtta agaatttctc tttcaataat      2940
     atcatcataa atgactatac taagttagga tcgatctcat tggacaaaaa tctggaatac      3000
     tattaaaaaa tgaataccgc tgaaaaagca tcaattttat ctatttcagc ttgtgatttt      3060
     aataattgtg attttctttt aaatgttaat tgttcgatta ggaagagctc ccctgcgaac      3120
     aggaaaaata cggttaaaac cgccttttcg caaaatacct atacttatgc tgctagaaca      3180
     gctaggaacc cctgcgttgc gcaaacaaat gccattaaaa tggccagtct gcgaggcaga      3240
     attaatacgc ttaatgtatc aagaaaagta catgcgactc gcatcgcgaa ccaatctatg      3300
     tgcattaaac gcattatcaa aaagcccaag ttatcaattt caaatttgac gcaggttagg      3360
     aattattatg accgaaaatc aatgtatgat tttatcccta cggaacatca cacaattgcc      3420
     tgtatttctt cagaagactg tacaaacgtc aattctgaag tgatcaaccc agaaaacata      3480
     cttcccactg ataattcggg aacaccaatt tctattgaca ggtctctgcc agtatcaatc      3540
     tttcagaaga tcaaaaatat catagaaaat tccaaagaaa tatttgcatc aaagaacata      3600
     gaattaaaaa aggcttgcat tcttcctgca gaaataaatc tcactgatga cataccagtt      3660
     cattctccgc cctttcacca atcaccaatt gaagatgaac aaatacatga gataatttca      3720
     gagctaaaat caattgatgt tattggagaa agcacaagcc cgtatgctag cccggctttc      3780
     ctggtggtaa aacccggcgt agataaaact gtatctacca aattatctgc tgccgataaa      3840
     cgtttggtgg ttgacttcag aaaattaata aaaaagttat ccccgatagg taccctctcc      3900
     ccaggataga ttctttattt acagaacttc gcaaacataa atacttcagt aaattcgatt      3960
     tcataagtgg attctttcaa caggaactat cagttaaatc ccgttaatgc tcagctttca      4020
     ctacaaacag aggtttattt gaattccatc gacaaccaat gggaatgcaa aatggttctt      4080
     catcttagat tccactgatc actcattcga ttggaacccc caagctgaag cagcattcaa      4140
     acgccttatt tatttatttt ctcacaagcc agaacttcaa aattttaaag ttaattttaa      4200
     agttaaaggt gcaatgtttc taaattttca aatagatgtt caaatacctt attattcata      4260
     taagtatttc tcgtgttttc ttcttaacaa tgatcttagt taatcacacg gtcgcgtggg      4320
     ttagctaaac tcattttatt tgtcattgca aaaactttgc agtgacaaat gattcatgag      4380
     gagaaatcat agaaaaagaa atgaaattct cctatcaaat tttaagtttt cttatttgtt      4440
     ctgagatatg gaaccagtta ttttcattaa ttgcatggta gcattaatta aagaatctaa      4500
     ttccgtttca ttatcactag aaaacaaaat aattggactc tgggatgatc actttggact      4560
     tgaaaaatta cttatactat cgattgtcat tttaatattt cagtttacta ctgattgtgt      4620
     gtttctgctt tctttctgtg caggaactca cctttcagac tggcctaggg aaaactaatc      4680
     aatttttatg agactgctac tttcaaccac agcatcatta aatttgataa gccgctgcca      4740
     tcacagcaaa atcacaacag ctgttacgtc tccagctatg cgacaaactt tatctgataa      4800
     aattcttctt ttctatttct aaagtaaacc aagccataat tagttgacta gttttgctaa      4860
     gtaaacctgt ccacaattat aaacaatgtt aaattttctt ccactcttgg ttccttttcg      4920
     ttaaaatggt atgtattacg aaagttttaa aaccacagtt aaccaccagt ttaagttagc      4980
     ggacaaccac tttctcacgg acatagatgc caaatcagca ttgtaattat atgagaaact      5040
     tagagtaact atttttaaca attaccaaaa atatttgtta ttacttgata tacttttgta      5100
     cgcaaggtaa gattcagcaa ataataacca aattttcagt aaatggcagg agccattttt      5160
     ttcaacaagc cggga                                                       5175
//
ID   Gypsy-16_BTa-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-359
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 690-690 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~97% identical to each other.
XX
SQ   Sequence 359 BP; 78 A; 98 C; 66 G; 117 T; 0 other;
     tgttagcacc tccaattgct tcccgcctcc ttttcaaaat gaggaagctt ccagacctct        60
     ccgcgcgcag cgtcacgatc gaacaccgga ttgggagagg aggaccggcc attttggtga       120
     ttcattcatt tttttctgag gtacagggca tagctcggga actggtccct ttttcaactt       180
     ttcctcgtgt ttcgaatttc gtctgttttt gctgaatctc gtcttgcaat atcttgcttc       240
     atgtgatttg tttccaaagc cgaagtaata aatcttcaat tcatatcaaa ttcacgtttc       300
     tcgtcttttg tcgctctccc accgttctaa ctcaccaccg aaatccagcc aacctaaca        359
//
ID   Gypsy-16_CFl-I repbase;    DNA;    INV; 6927 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 19.04, Created)
DT   21-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-6927
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1038-1038 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1308..2549
FT                 /product="Gypsy-16_CFl-I_1p"
FT                 /translation="MSLENPSDTEWVQELSTDQLKGELEKRGQRTDGSTSA
FT                 LMDRLVKYEDASQPGWATPRAPAEFDLAADQRPEGGAGETTRDRLQSRPPR
FT                 IELLPRTESRPPGRSTSSAMDVYHMMRRWNLQFSGARGSDAETFLTRIEEG
FT                 RALITVSDEEIFKCIPFFLSGIALYWYRSERDRWRTWRDFETAWRARFGNP
FT                 DFQFALRDEIMRRTQGEHEPIADFITCIRALFDRLSPPWSLDEQLNYAHRN
FT                 MLPRLQISVPRRTVYDFASLEDAATRVERSYEAIAQYRAPPAPEQSIFPDL
FT                 AYRPPKKSSKGPAAIAAAGIAGVQSAKKKRGEKRNKSGATGTQAVSVTAAA
FT                 PSAPATSSTSTATASTVASSARNVKCWNCEKTGHIARECSESRRQYCYRCG
FT                 KANVTVKTCPSCSGNETESR"
FT   CDS           join(2615..4075,4047..5213)
FT                 /product="Gypsy-16_CFl-I_2p"
FT                 /translation="MILSYNMVDPGNTLDLPPLHYCTIEIEGELLRALVDS
FT                 GSTRTILGEEGIKIVRKLNLPIRKRITRIRTADGRIARASEEVDIAFSLKG
FT                 RVHRISACLLPNLTVSCIIGMDFLREFGMVIDYETSKWNFKTSPSVTYSFE
FT                 SHYGESYICSGLPELTPSQSERLESFLKNKIPETVENPGVISLTEHVIDVG
FT                 YNKPIKQRCYLVSPKVQEAIRDKVDKMLEAGIIEPSFSEWSNPIVMVKKPN
FT                 GKYRFCLDFRKVNNVSKKDAYPLPNMNGILDKLRSARYISTLDLSQAYFQI
FT                 PLAKESREITAFSVPGKGLYHFTRMPYGLTGAPATFQRLLDKLIGPEMEPH
FT                 AFVYLDDIVIVTPTFEEHLEWLERVLNKIFAAGLTINPAKCEFCRSQVRYL
FT                 GFIVQRDGLTVDPEKVQPILEYPAPRNIKQLRRFLGMSSWYRRFIPQFATL
FT                 SEPLTRLLKKNQRWEWAEDQTRAFEQIRSHLIAAPTLSRARLPRQPYRAPD
FT                 FSIPFVLQTDASSVGIGAVLTQTVGEQENIVAFASKALSDPEKKYSVTEQE
FT                 CLAVIWAIKKFRPYLEGYKFTVVTDHSSLRWLHNLKNPTGRLARWALELLE
FT                 YDYEIVHRKGALHHVPDALSRMYEGDTEVKVLIAVEADLVADTADEWYRKR
FT                 FREVADRTKRYTDWKIVDGQLYYCRPRAIVSEIVEDLDRWKLVLPQELREE
FT                 AMREAHDEPQSGHLGVEKTFQRLAVAYFWPNMFRDVAKYVKQCDTCQRTKV
FT                 EQAPPVGLMGRRVVEGPWTVIAADIMGPFPKSKSGFTYILVVQDLFTKWVE
FT                 CFPLRAANGKKICEALEEVVSRWGTPKFLLTDNGTEFANRTLQAFAEHGIQ
FT                 LTTIPPYHPQANPVERVNRVLKT"
XX
SQ   Sequence 6927 BP; 1808 A; 1464 C; 1760 G; 1873 T; 22 other;
     aattggcgcc caacgtgggg tacactaaca acagggcaaa taataattta aaattttttt        60
     ttccgttgaa aattcgttgt cgcaagtaac aaggaactcg agaataacaa ggtcaccgtt       120
     aatgtattga attttgaatg tttctgatat ctctttgtgc tatatatttg aacatgtatt       180
     gcctttgtat ttgagggtcg cgagcaaata agattttgaa aataactgcc gattgtgtcg       240
     agatttataa aaacgaaaat aatttaagtt attattcggt cttttcgcta gaaacttcta       300
     gactattatt aatttaattt aaaatatttc ttttgttaaa atatttcttt ctctttttaa       360
     ataatttttt ttgctgcctt atgaagaggc tatcataata attaatagaa gagtcattaa       420
     aattaataga gtcgaaatct ttactttttt tcgggaataa tattgaatat tttaaagatt       480
     catttcatgt aatttaattt tcacggaatt tcactaaatt ttcttaattt aaaattaata       540
     tcttttcttt tattgctgta attaagaatc tagccttgtt ttcgagtatt tctttatgaa       600
     atttatatca gccggaaata tctaagaata tctttacttg cgggatttct tttgtcaatt       660
     tgmtagaaat atttaagtgt tctcgactta tgcttgcgca ccctcgcaac ttttttkata       720
     tattggcgca cttgttgctg cctaatttta ttatgcattt ttattgatgt gctattatat       780
     atgctattat atgtgatatt atattattga attttgcatt attgaatgat tgctatttga       840
     tttttttgtg tattgattac tgccattatt tttttwtgca aatmtttgtg tgctaatcct       900
     gcttctttca ggaaatattg tgctatatta ttaagcttat taatatttta attgcmtcta       960
     aggaaattgt tcgtggaatt tcggtgtgat ttaakgcggt tggcttgaag gaatattttg      1020
     gctgcttagg atttcgatta gagatttgga gttcgtttcg tgtaccgtta ctgtttatat      1080
     tttcttcgcg tttcgaccgt tcggcttgtt ggatattttt gaatttgagt gatttgcggt      1140
     gggtagcttc tctctgagat cgattcgtcc tgccgtgaaa taaatattcg tatccttggg      1200
     aagtcmctgc gctcgagtaa gacmatcaaa attttttttg tattcgggtt cgctgccgtt      1260
     aaataacggc ttgatttgag tttgagattt catattcgaa gtttccgatg agtttagaaa      1320
     acccgagcga taccgagtgg gttcaagagc tgtcgacgga tcagctgaag ggggaattag      1380
     agaaacgcgg gcagagaacg gacggatcca cctccgcatt aatggataga ttagttaaat      1440
     acgaggatgc ctcgcaaccg gggtgggcga caccgcgagc mcccgccgaa tttgatctcg      1500
     cggccgatca acgaccggag ggcggggcgg gcgagacgac ccgcgaccga ttgcaatcgc      1560
     gacccccgcg aatagagcta ctccctcgta ccgagagtcg accgcccggg agatccacgt      1620
     cttccgcgat ggacgtctac cacatgatga gacgttggaa tttacagttt tccggcgcma      1680
     gaggtagcga cgcggaaacc ttcttaacga gaatagagga gggacgcgct ctaataactg      1740
     ttagcgatga ggagattttt aaatgcattc ctttcttttt atcgggtatc gcgctttatt      1800
     ggtatcgtag cgagcgtgat cggtggagaa cttggcgaga ttttgagacc gcatggcgcg      1860
     cgagattcgg taatccggat tttcaattcg cgttacgaga cgagatcatg agacgcacac      1920
     agggcgaaca tgagcccatt gctgatttta taacgtgtat tcgagctctt ttcgatcgtt      1980
     tgagtccgcc gtggagttta gacgagcaat taaattacgc tcatcgtaat atgttgccgc      2040
     gwttgcagat atcagtgccg cgtcgtaccg tttatgattt cgcttctttg gaggacgcag      2100
     ccacgcgggt agaacggagt tacgaggcaa tagctcaata tcgtgcccct ccggccccgg      2160
     aacaatctat tttcccggat ttagcgtatc gaccgccgaa aaagtcctcg aagggtcctg      2220
     ccgcaatagc tgccgccgga atagccggcg tgcaatccgc gaaaaagaaa aggggggaaa      2280
     aacggaataa aagcggggcc accggcactc aagcggtctc ggtgacggcc gctgcaccct      2340
     ccgctcccgc gacttcgagc acttcaaccg cgaccgctag tacagttgcc tcgtccgcgc      2400
     gaaatgtaaa gtgctggaat tgcgagaaaa ccggccatat tgcgcgcgaa tgttctgagt      2460
     ctcgtcgtca gtactgttat cgatgcggta aagcgaacgt caccgtaaaa acgtgccctt      2520
     cgtgttcggg aaacgagacc gagagtcgtt aggacgggcc gtcacgactc cgaaggmtga      2580
     aggagaggcc cgcgactcga attctgttcg cgggatgatc ttgtcatata atatggtcga      2640
     tcccgggaat acgttagatc taccgccgct acactattgc acgatcgaaa tagagggaga      2700
     actcttaaga gcscttgtag attcaggctc cactcgcaca attctcggcg aagagggcat      2760
     aaagatcgtt cgaaaattaa atttgcctat ccgwaagaga attacgagaa ttcgcaccgc      2820
     cgacgggcga atagcgagag cgagcgagga agtggatatc gcgttctctt tgaaaggtcg      2880
     tgtacatagg atmtcggctt gtttgctgcc gaatttgact gtttcgtgta taataggcat      2940
     ggatttttta cgcgaatttg gtatggttat cgattacgaa acttcgaaat ggaatttcaa      3000
     aactagtcct tccgtaacat attcttttga atcgcattat ggggaatcat atatatgcag      3060
     cgggcttccc gaattgacgc cttcgcagag tgaacgctta gaatcatttt tgaaaaataa      3120
     aataccggaa actgtcgaaa accctggtgt catctctctc acagagcatg taatcgacgt      3180
     cggatataat aaaccgatta aacaacggtg ctatctagtt tcgccgaaag tacaggaggc      3240
     tattcgcgac aaggtggata aaatgttaga ggctgggatt atcgagcctt cctttagtga      3300
     gtggtctaat cctatagtta tggttaaaaa gcctaacggg aagtataggt tctgtttgga      3360
     tttccggaaa gttaataacg tttccaaaaa agatgcgtat ccgctgccga acatgaacgg      3420
     cattttagat aaattaagat cggcaaggta catatcaact ctcgacttga gtcaggcgta      3480
     ttttcaaata cctctggcca aggagagcag agagattacc gcctttagcg tacccggaaa      3540
     aggattatac cacttcacgc gaatgcctta cggactaacg ggagcacccg cgacattcca      3600
     gcgcttgtta gataaattaa ttgggccgga gatggaaccg cacgcgttcg tgtacttaga      3660
     tgacatagtg atcgtaacgc ccacttttga ggagcattta gagtggttag aacgcgtgtt      3720
     gaataaaatt tttgctgccg gtctcacaat aaatccggcg aaatgtgagt tttgccgctc      3780
     acaggttcgt tatctcggat ttatcgtaca aagagatggg ctaaccgtag atccggaaaa      3840
     ggttcaaccg attttagagt atccggctcc gcgaaatatc aagcagttgc gtcgatttct      3900
     aggcatgtcg tcctggtatc gacgatttat tccacagttc gcgactctca gcgaaccttt      3960
     gacaagatta ttaaagaaaa atcaacgctg ggaatgggcg gaggatcaga cccgtgcttt      4020
     cgaacagatc cgttcacatt taatagccgc gccaacctta tcgcgcgcca gactttagca      4080
     ttccgtttgt cctgcaaaca gacgcgagtt ctgtcggaat cggagcggtt ttgacgcaaa      4140
     cggtcgggga acaagaaaat attgtagctt ttgcaagcaa ggcgttatca gacccggaaa      4200
     agaaatattc agttacggag caagagtgtt tagccgtcat atgggcaatt aagaaattta      4260
     gaccatatct ggagggttat aaatttacgg tggtaaccga ccacagtagc ttgcgatggc      4320
     tgcacaatct taagaacccc acgggccgac tcgcgagatg ggcgttagaa ctactcgagt      4380
     acgattacga gatagtgcat agaaaaggcg cgttacatca cgtaccggat gctctgtcga      4440
     gaatgtatga gggtgacact gaggttaaag tattaattgc cgtggaagca gatttagttg      4500
     ccgataccgc cgacgagtgg tatcgcaagc gtttcaggga agtagctgat cggactaaaa      4560
     gatatacgga ttggaaaatt gtagacggtc agttatatta ttgtagaccg agagctatcg      4620
     tatcggagat agtcgaagat ttagatcggt ggaaattagt gttaccgcaa gagttaaggg      4680
     aggaagctat gagggaggca cacgacgaac cgcaatccgg tcacttgggg gtggagaaga      4740
     cctttcagag actcgcggtc gcgtattttt ggccgaatat gtttagggac gtcgcgaagt      4800
     acgttaagca gtgtgatacg tgtcagcgta ctaaagtgga acaggctcct ccggtaggac      4860
     tcatgggtcg ccgcgtcgtg gagggcccat ggaccgttat tgctgccgat ataatgggac      4920
     cgtttcccaa aagtaagtcc ggattcacgt acatcttggt cgtgcaggac ttgttcacca      4980
     aatgggtaga atgctttccg ctacgcgccg cgaacgggaa aaagatttgt gaggctttgg      5040
     aagaggtagt ctcgcggtgg ggtacgccaa aattcctgct cacggataac ggcacggaat      5100
     tcgcgaaccg aacgttgcaa gcgttcgccg agcacggtat acagctcacg accattccgc      5160
     cgtaccaccc gcaagcgaat cccgtggagc gagtaaatcg cgtcctaaaa acatgattgt      5220
     cgcgtttctg gaccgcgatc atagagagtg ggatgagcac ttaagagact tccgtttcgc      5280
     gtacaacacg gctcatcatt cgtcgatcgg aacctcccta gctttcttga atttaggacg      5340
     agagttagat ccttctaaga gcttgcgcga tcgttgccgg ggagcgacgg aagtcgaacc      5400
     gcgagacccc gctgmctggt ckgaacgaat gaggaaawtg cgtaccctgt atgactgggt      5460
     ggaggagaat ttaaagcagc mtaccgcaag caagccamtt attacgattt gaggcggcgk      5520
     gatgtsaggc ttcgagtcgg cgatttggta ttaaaacgcc atcacgtttt atcgtcagca      5580
     gcacaaaata ttgtcgcaaa gctatccctg aaattccacg gaccttttcg cattaatcgc      5640
     atgttttcgc ctgtcgtgtg tgagctcgtt agtttaaatg gcgattttac tgataaggtg      5700
     catgtgaaag atctaaaacc ctatcatgtt cctagatagc tgcttcctag atagctgccg      5760
     atggaaaaga aatttattag agaatacgaa ctaggagagg gagagaatag agagaaatgg      5820
     acgactggca aaatttcaga cgccgatacc gccatgtcat cggggaagtc catgactgat      5880
     acccgggctt ctggacggag ctccgagacc tggcggagag tcgagactga cgccggacca      5940
     cgactcgggg agcgatcgtg cgggagttcc ttcgcacccg ggacgaaggc actcaggcct      6000
     ccgggggaag gacactcgga cagtgtcttt ttggggtcgg cataccggag cttcaccacg      6060
     ccggcacgca gaccggggca gccactacac agactacggg ggtccaaatg aacgccccct      6120
     cgcataatat agttgccgta ctaccggtat ctcccggacg ggggagagga cggaacctat      6180
     tggccccgac agttctgagg cgacctggag ggatgaaaga ggatcctcct acaccaaggc      6240
     catcctcgcc gaaagatcgc gacatcgtcc tccagagacg ggaatcatcc cagtcgggcg      6300
     cgggatcggt cgtaaccacc agaccaccca ccagagggtc cagcgtatgc tggaattgcc      6360
     gcgcgacgga ccaccggtac tcctactgcc cgcagcctaa agaccggcga tattgttacg      6420
     agtgtgggag ccgggacggg gtgactctcc gtacgtgtcc cagatgtcgg gacgaatgga      6480
     aggacctcgg gccttaccat cccgacagag gccacctggg ccactaatag ttgccgctaa      6540
     gccactccaa aaattttttt tccttcttta ttttgatgtt tccttttttg ttttgtatcg      6600
     gatcctcttc gaggtaaaat aaactggatt gagagaccac agtaacgtct taatgaactg      6660
     ttaaccctta ctcccttccc gctggcttca ttaggttaag gaattcgttt cgccttggtt      6720
     acattcagct tttgcttgtg gtgattgcat gttatgtgag gcatgcttgt tggcaagatg      6780
     gaaatgacta gaggcgcaac caaccgtgga agagagcgga ctaatcttgt tattgagttt      6840
     taggaattag aggtattaga gagttaacgg ttatcgacgc tggtcgatag ccaagatctc      6900
     ctcggtcctc tcctaggagg ggggagt                                          6927
//
ID   Gypsy-16_CFl-LTR repbase;    DNA;    INV; 2005 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 19.04, Created)
DT   21-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2005
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1039-1039 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2005 BP; 507 A; 460 C; 480 G; 556 T; 2 other;
     tgtgacgtga cacttggcgg tccgtcacaa ggatcgcgag atctgaccgg tattattttt        60
     gggccctcgt tctcccctga tttagggaga gagagcgaat attggaggcg agggtaggct       120
     cgcctcccct tatgtagcgt taattataag agtagagtta agcggacgtg agggaggacg       180
     ttgacgagat ctcatccggt gactcgaccc ggcgcagaag accagattag aagacgtgcg       240
     ggacgagcgg aggcgccgat tatgaggaga atgccgagct aagtacccct ctctactttt       300
     gtaaatcgga aaaacctatt tgaaacatcg ctgccgctcc tgtacattcc cttatgctca       360
     gcaggtacga ggaataacca cggggaaagc cggccgacaa ttagaagcga acatcggaac       420
     cccgaaacgg agccagctcg gccgaattaa gcgctacagg acatctataa aagtaatggc       480
     gagcggctgc cggaaaaatc ctcacaccag gctgagaaca aagagccgag aaaaatggga       540
     cgaagcaaca gggtggcgac aggcgcaaat acggccctga aggccgcagg agtaattaaa       600
     atcmgcgacg atcctgaggg ttgcggaagc gccacaagtg gcctacttac gcattaattg       660
     ccggcacgat tccgacgggc cttccgctcg tcactgttcg gcggaccagc gtaagagtac       720
     gacggcccag aattatcgat tttccgtgtg gatgccgaga gagccaagga cctcaaggag       780
     tcatcggtga gacgagcgtc gacctcctca ggccgtttta tcgttagagt atcaggtaga       840
     attagcccga acagagtccg tgccgaattg ctgccgttga aaaattcttt ackcgagatt       900
     aattcgagtt tcgataagtg cgtagtagaa tgcgacggcc ggccgacata ctttgttcga       960
     gctacgataa tattaagtgc cctctctccc ggttaagcgc cgacagtcaa atttattgtc      1020
     ttttcttctt gcgattattg ttgcttgtaa aattttgtgt aaagtaactt gtgatacgac      1080
     gaactcacac acaaaggcga tcgcgatatt tgatagccgg cagatgcgtt gcggcatcga      1140
     ctcgcgtatc cctgcgacgt gaatcgttcg atcctttatt atagtttatt gttcgcgctt      1200
     ttgatatttt attaccgtta attgttcgcg ctcatgttcg atcgtttatc ttgtgtaatt      1260
     gcttagtcgc tcaattcttc cgttattacc gtaattctgt atttgtctga tcgactcacg      1320
     ttaataatcg attctattaa tatcgcgttt ggcgaattta actaccgtca ttatttaata      1380
     tttttggctt acaacagacg gatgtcatta ttagaagcat catcgcggta ttcattatta      1440
     ataattcaag cggaatttgt agctgccgag accctgtgac gtctcgttta gcgcaacatt      1500
     ccaagacttt cttacgctgt ttttttttct atcgcgcgac acgtgatacc gcggtgatcg      1560
     cgctcgaatg ccggcccgtc gctgccggaa aaattcgcta taatcgattg taaaacatct      1620
     tgcaatatct acgtgaatct gtctcgtgtt aaactttatc tatttgttaa atatattcat      1680
     tcttgttatt ctaatatttt gtcttatttg cagccacctt gtattctcga tccttccttg      1740
     ttaattatta aaacggaccg ccccctctgc cattttcgag acggggctag ccgagcgtcc      1800
     gtcgcgatta attgagtagc gttttccgtg cttattatat cgagatatcg aattactttt      1860
     tttgaagtgg tgcggattac cgcacctggc gcccaaaaac ttttggagat aaatttgagt      1920
     agaaatcgcg ccgaaggtgt gccgtgggcc aataacaccg gccagatctc attatcagcc      1980
     ctaattaata aaatcaacgg tcaca                                            2005
//
ID   Gypsy-16_CQ-I repbase;    DNA;    INV; 4538 BP.
XX
AC   AAWU01025728;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_CQ_;
KW   Gypsy-16_CQ-LTR; Gypsy-16_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4538
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 411-411 (2011).
XX
DR   Genome; AAWU01025728; Positions   30168   34705.
XX
CC   Positions [3450-3800] - Integrase core
CC   'GGAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..4505
FT                 /product="Gypsy-16_CQ-I_1p"
FT                 /translation="MDADQLKQLMDHQMKMVEEMIKGMSTANAQMVALAVT
FT                 RATAAANVPAQSSQVPLPSPLVLEGDMEENMDFFEKSWNNYVKATRMDKWP
FT                 ATDDQQKVSFLLSVIGEQARKKFFNFELTVDQSATPQNALTAIRAKVTPKR
FT                 NIILDRLEFFSATQTSRETTDDFLTRLKTLAQMSKLGDQTNSLVTYKLVTA
FT                 NKWPQIRSKMLAIPDITLDKAVDMCRAEEITARRSLELAMLPPESDVKKIG
FT                 RKKVQSKAKQFRCKFCGDAHEFVKGACPAFGKKCNRCKGRNHFEKVCKQKS
FT                 KPSRKSSKRVKEIKDDSSGTEEYSSHDDASSEDSEEEEYEIGKIFDDSDRG
FT                 GSVCAELEVKLNKKWKKIVCELDTGANTSLVGYDYLVKQVKEDKPVLLPSK
FT                 LRLQSFGGNPIKVLGQVKVPSRRKGRKYKVVLQVVEGSHRPLLSAKASRVL
FT                 GFVRFCKAVSFGGPNPAFPPSDLLNIYRVEAQRLADSHKDLFNGYGKFDGE
FT                 ISLEVDDSVAPSIQPPRRVPIALRGKMKHELEVMERDGIITKESAHTDWVS
FT                 NILIVQRGDPNSPSVRVCLDPVPLNKALKRPHLQFVTLDEILPELGKARVF
FT                 STVDAKKGFWHIVLDEKSSKLTTFWTPFGRYRWIRMPFGIAPAPEIFQMKL
FT                 QGTIQGLDGVECIADDILVYGTGNTMEEALINHNERLKKLFRRLEEHHVKL
FT                 NREKLKLCQTSVKFYGHVLTDQGLKPDESKISTIRKYPTPTNRKEVHRFVG
FT                 MVNYLSKFIPNLSANLTNLRKLIVESQPWKWTSAEADEFDRVKSLVSDIGT
FT                 LSYYDVSQPITIECDASCFGLGAAVYQNNGVIAYASRTLTDTERNYAQIEK
FT                 ELLAILFACIRFDQLIVGNPQATVKTDHKPLITIFNKPLLSAPKRLQHMLL
FT                 NLQRYRLSIVFVTGKENVVADALSRAPEPKDRLQEENKKWNIYKVFKELEN
FT                 VEMSNFLSVSDSRLSEIMEETEKDPSMQQVIEFVQRGWPASADRVSENVKV
FT                 YYGYREELSTQNGLVFRGDRILVPHILRRKLVDSCHVSHNGVEATLKLARA
FT                 NLFWPGMSSQIKEVVARCNVCAKFAASQQNPLMKSHSIPVHPFQMISMDVF
FT                 FAEYQGHKRNFLVTVDHYSDFFEVDLLKDLTPQSVIAACQQNFARHGTPQR
FT                 VLTDNGTNFVNRQMVKFAKDWDFELVTFAPHHQQANGKSEAAVKIAKRLLM
FT                 KANETGTDFWYALLHWRNIPNKIGSSPSARLFSRATRCGVPSSINNLLPKV
FT                 VESVPEAIERNRKKIKFQYDKKARVLPELTTGSPVFVQLNPETSKVWTPGT
FT                 IANRMNDRSYCVDVAGKEYRRSLVHIKPRQEHATTPVRSGTPVPESLPESG
FT                 SNSAAADFPAITPSCQMDEFTGENSPPAAMPQSPPLMVSAPAATTRGAVRG
FT                 TESKDNHVGTPGVTRPRRETRIPAKLKDFILH"
XX
SQ   Sequence 4538 BP; 1211 A; 1184 C; 1233 G; 910 T; 0 other;
     tggtgtcaga agtgcgtgaa ctctgagaga catttccggc gtcgtctata tcgcggaaag        60
     tgttgatttt ttcataaaaa agcgaaaaag ttttcgcgtc gaagttcgcg tcgttttttg       120
     gttttcgtac cgccattttg ttttcgcgaa gtgaacatcc tcgtaaaatg gatgctgacc       180
     agttgaagca gctgatggac catcagatga agatggtgga ggagatgatt aaaggaatgt       240
     cgacggcgaa tgcccaaatg gtggccctcg ccgtaacccg agccacggcc gcagcgaacg       300
     ttccagcgca atcatctcaa gttcctctgc cctcaccgct tgtgctcgag ggtgacatgg       360
     aggagaacat ggattttttc gagaaaagct ggaacaatta cgtaaaggca acacggatgg       420
     ataagtggcc agccaccgac gaccagcaga aggttagctt cctgttgtcg gtgatcggtg       480
     agcaagcgag gaagaaattc ttcaacttcg agctcacggt agatcaaagc gccacaccac       540
     aaaacgcttt gaccgcgatt cgagccaagg taactccgaa gcggaatatc atcctggacc       600
     ggcttgagtt cttttccgcg acacaaacgt cacgggaaac aacggacgat tttttgaccc       660
     gactcaagac gctggcacaa atgtccaagc tcggagatca aaccaacagt cttgtcacgt       720
     acaaacttgt tactgccaac aaatggcccc agatccgctc aaagatgttg gccatcccag       780
     acataaccct cgacaaagca gtggacatgt gccgggcgga agagatcacc gcaaggcgca       840
     gcctggagct ggcgatgttg ccgccggaat ccgacgtaaa gaagatcggc aggaagaagg       900
     tccagtccaa ggctaaacaa tttcggtgca aattctgcgg tgacgcccat gagttcgtga       960
     aaggtgcttg tccggccttc ggcaaaaagt gcaatcgttg caagggccgc aaccatttcg      1020
     agaaggtgtg caagcagaag tccaagccaa gccgaaagag ctcgaagcgc gtgaaggaga      1080
     tcaaggatga cagcagcggg acggaggagt acagttctca cgacgacgcc tcatcggagg      1140
     acagcgagga ggaagagtac gagatcggaa aaattttcga cgactccgac cgcggaggaa      1200
     gtgtttgtgc cgagctggaa gtgaagttga acaaaaaatg gaagaaaatc gtatgtgaac      1260
     tagacaccgg cgcaaacacg agccttgttg gatatgacta tctagtgaaa caagtgaaag      1320
     aagataaacc agtgttgttg ccatcaaagt tgcgactgca gagcttcggt gggaatccca      1380
     tcaaagttct gggtcaagtg aaagtgccaa gccgtcgaaa aggacgcaaa tacaaagtag      1440
     tgctgcaagt ggttgaagga agccatcgac cactgctctc ggccaaggcc tcgagagtgc      1500
     tgggattcgt gcgtttctgc aaagccgtat ccttcggtgg tccaaacccg gctttccccc      1560
     cttcggattt gcttaacatc taccgcgtgg aagcccaaag actcgcagac agccacaaag      1620
     acctgttcaa cggctacggc aagttcgacg gcgagatttc gctggaggtt gatgactcgg      1680
     tagccccgtc gatccagccg ccacgccgag tccccatcgc attacgcggt aagatgaagc      1740
     acgagttgga agtcatggag cgagatggaa tcatcaccaa ggagtcggcc cacacggact      1800
     gggtcagcaa catactcatc gtgcagcgcg gtgatccaaa ctcgccgagc gttcgcgtgt      1860
     gcctggaccc agtgccgttg aacaaagctc tgaagagacc gcacttgcag ttcgtcacac      1920
     tggatgaaat ccttccggaa ctcggaaagg cccgggtttt ctcgacggtt gacgccaaaa      1980
     aagggttttg gcacatcgtg ttggacgaaa agagcagcaa gctaacgaca ttctggacgc      2040
     cttttgggcg ctatcgctgg atacgcatgc cctttggcat agcaccggct ccggagatat      2100
     tccaaatgaa acttcaagga acaatccagg gtctggacgg cgtcgaatgt attgcggacg      2160
     acattctcgt ctatgggacc ggaaacacga tggaggaggc actcatcaac cacaacgaac      2220
     gcctcaagaa gctcttccgc agactcgagg agcaccacgt taagcttaac cgagaaaagc      2280
     tgaagctgtg ccaaacgtcc gttaagttct acgggcatgt tctaaccgac cagggactga      2340
     agccggacga gagcaagatt tcgacgattc gcaagtaccc aacgccgacc aacaggaagg      2400
     aggtccacag gttcgtcggg atggtgaact atctcagcaa atttattccg aacctcagcg      2460
     cgaatctcac caacctgcga aagcttatcg tcgaatcaca accctggaag tggacaagcg      2520
     cagaagcgga cgagttcgat cgtgtgaagt cgctggtttc agacatcggc acgctctctt      2580
     actacgacgt gagccagccg atcaccatcg aatgcgatgc aagttgtttc gggctgggtg      2640
     ctgccgttta ccaaaacaac ggtgtcatcg cctacgcgtc gcgcacgctg acggacaccg      2700
     aacggaatta cgcgcagatt gagaaggagc tgttggcgat cctgtttgct tgcatccgtt      2760
     tcgaccaact catcgtaggc aacccgcaag caacagtgaa gacggaccac aagccgctga      2820
     tcaccatctt taacaagccg ttgctctccg cgccgaaacg actccagcac atgctgctga      2880
     acctgcagcg ttaccgtctc tcgattgtct ttgtcacggg caaagaaaat gtagtcgctg      2940
     atgcactatc acgcgccccg gaaccaaagg atcgtttgca ggaggagaat aagaagtgga      3000
     acatctacaa ggtgttcaag gaactcgaga acgtggagat gagtaacttc ctgagcgttt      3060
     cggatagtcg attgagcgag ataatggaag agaccgagaa agacccgtcg atgcagcagg      3120
     tcatcgaatt tgtgcagcgt ggatggccag catctgccga ccgagtctcg gaaaacgtta      3180
     aagtttatta cggctaccgc gaggaacttt ccacgcagaa cggtcttgtc ttccgtggtg      3240
     accgcatcct cgtcccgcac attctccgtc gcaagctggt ggacagctgt cacgtgagcc      3300
     acaacggcgt cgaagccacc ctcaagctcg cccgtgctaa cctcttctgg ccgggaatga      3360
     gctcccagat caaagaggtc gtagcacgct gcaacgtgtg tgccaaattc gccgcttctc      3420
     agcagaatcc gctcatgaag agccacagca ttccggtcca cccgttccag atgatatcga      3480
     tggacgtatt cttcgcggag tatcaaggac acaagcgaaa tttcctggtc acggtggatc      3540
     actactccga cttcttcgag gtcgacttgc tgaaggacct tacgccgcaa tccgtcattg      3600
     cggcctgtca gcaaaacttc gcgcggcacg gcacacccca aagagtgttg acggacaatg      3660
     gcaccaactt cgtcaaccga caaatggtga aatttgcgaa agactgggat tttgaactcg      3720
     tgactttcgc accacaccac cagcaggcga acgggaagtc cgaagctgca gtaaaaatcg      3780
     ccaaacgctt gctgatgaag gccaacgaaa cagggacaga tttctggtac gcgctgctcc      3840
     actggagaaa catccccaac aagattgggt caagcccatc tgcgcgattg ttttcccgtg      3900
     ctacaaggtg tggcgttccc agctcgatca ataatctgct gccgaaggtg gtggaaagcg      3960
     tcccggaagc tatcgagcgg aacagaaaga agataaagtt ccagtacgac aagaaggcgc      4020
     gggttttacc tgagttgacg accggatctc cagtgttcgt ccagcttaat ccggaaacat      4080
     ccaaggtttg gactcctggt acaatcgcca accggatgaa tgatcgcagc tactgtgtcg      4140
     acgttgccgg caaggagtac cggcgcagcc tcgtccacat aaaaccacgt caagaacatg      4200
     caacgacacc cgtccggagc ggaacacctg ttcctgaatc gctgccggaa agtggatcga      4260
     attctgcagc agcagacttt cctgcgatca caccgagttg tcaaatggat gaatttactg      4320
     gagagaactc gccgcctgct gcgatgccgc aatcgccgcc gctgatggtt tcagcgcctg      4380
     ccgcgacaac acgaggagcg gtgcgtggaa cggagagcaa ggataaccac gtgggcactc      4440
     caggagttac acgaccgaga cgagagacca ggattccagc gaagctgaag gattttattt      4500
     tgcactagcg taacttttac ttttcactgt ggagagga                              4538
//
ID   Gypsy-16_CQ-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   AAWU01025728;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_CQ_;
KW   Gypsy-16_CQ-I; Gypsy-16_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 412-412 (2011).
XX
DR   Genome; AAWU01025728; Positions   29978   30167.
XX
SQ   Sequence 190 BP; 62 A; 45 C; 35 G; 48 T; 0 other;
     tgttgtatta tgcagatccc tgaatctggc aacacggtta ggaaacacac caacacactc        60
     acacactgac acactcgtag agcacagacg ccgttcgggc agttgataaa agtacattgt       120
     cgagttcaga ccgctgttaa taaacgctaa cttaatcgta ctttttaagt gttttaataa       180
     caccagaaca                                                              190
//
ID   Gypsy-16_DAn-I repbase;    DNA;    INV; 5067 BP.
XX
AC   AAPP01016063;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DAn_;
KW   Gypsy-16_DAn-LTR; Gypsy-16_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5067
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016063; Positions    6360    1294.
XX
CC   Positions [2285-2842] - Reverse transcriptase
CC   Positions [3851-4330] - Integrase core
CC   'ACAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..5014
FT                 /product="Gypsy-16_DAn-I_1p"
FT                 /translation="MDTININDYTAIELREWCKCLLLPSHGNKNELAARLN
FT                 KLSADHRGECPKTKHIDLIKNPKILCDIPQNSNEHEIEKQQDNLSEDKPEK
FT                 KKQSSKEAAEMLQGTDEMQNQKQLGDTNDETKDQLRKHNTNEETKDRQLTR
FT                 NTNEEAMDQNETQKTKETVENEQEKLLGAEEALNEDQQNENGGATKEGKYC
FT                 ELTNERQQIASETVAMGRQLNEIREAEIIRRELELLRLEKEILQKENNFLK
FT                 ANERASSKQEQMGDEIPFQSLRELLPDYDGETSVNAWRKHINFLRESYRLS
FT                 ENKLRVLIFSKLKGKAQNWLHSKPEMVSESIDGLLSAMDNAFVFEESTIIL
FT                 RQKFETRKWKSGESFSMYFNSKVELAKSILLTETEFIQYVIYGIPDRQIRT
FT                 TANMMRFKTKEDLLSSLLLAELTPVRPAGSLNVNSKPNEEAKGNLNEKQKL
FT                 RCYNCNCVGHMAANCRKPKREEGACYGCGKMDHKVADCTENKKKKDPTNRY
FT                 GSSDYVSYFNVEIDGSSNSPFFIECLIDSGSPVSLIKKSFVPADVKMKSAS
FT                 EAVYFGLNNSRLITNGRIFALIKIFNKVTRLEMLVVPNESMRTSILLGRDF
FT                 LNLSGAKLIWNKSDESDEIDNPVENIDNELQEKEFAMCTDDFEKKIFTIEY
FT                 ETNDIDINIGENLSNIEKTQFNDLFEKYYTTPVRPNEPETKCEMKIITNEL
FT                 KPFSCNPRRLSYAEKKELQKILDEFVEKGYIRPSDSEFVSPIVLVKKASGE
FT                 LRMCIDFRKLNKMTAKDSYPIPLIDDLLDQLSGKKWFTKLDLKNGFYHVFM
FT                 HEDSIRYTSFTTPLGQFEYLRMPFGLRNAPSTFQRFVNKIFNDLIKEGKVI
FT                 VYLDDIMIATEDLETHFEILKEVFKRLVRNKLELRLSKCEFLQMKVKYLGY
FT                 TITGSGIKADEKGIEAVRKFPVPTKVSEVQSFLGLCSYFRRFIQNFSTIAK
FT                 PLYDITRKNKEFQFGKVELDTFETLKEKLIDSPILALYSPNDETELHCDAS
FT                 SMGFGAILMQRKSDKKFHPVLYFSKRTSVTESRYHSFELETLAIIYALKRF
FT                 RVYLYGISFKIVTDCNSLTLTLSKKEINPRIARWALELENYDYKLEHRSGL
FT                 RMQHVDALSRCTNVMVIDTNSFEENLICQSKDDRIVEIKAMLEKIEHKFYE
FT                 MRNGIVYRKNNNDSILFYVPKDMETHVLYKYHNELGHMGTDKVVNVIMKSY
FT                 WFPKLREKVGQHIQNCLECIAFSSKQGKSEGYLHNIPKADKPFEMIHIDHF
FT                 GPVTTKDGKVRHVLVIVDGCTKFVRLYSARTTKSKEAITALEDYCRSYSRP
FT                 KYMVSDRGSCFTSSEFSDYLETCKISHIKIATGSPQANGQVERINRSLGPM
FT                 LAKLLSSDNKHSFDKVLEMIEFTLNNTVHRSIGQHPSIMLFGTEQKGALID
FT                 GLKETLQGHCENERIEIIREEARKREKQLQSYNERTKNEKRKKSIVYKLGD
FT                 YVVVKNFDSHTGISKKLVPRFRGPFKVIKVLGNDRYIVEDVDGFQQSRVPY
FT                 SGVWASANMKPWLGWLENERDDQDNDEFELDEKEEERTNETSNENEKVNEQ
FT                 SNGMSKENIEISLKNKPTVRIKRNEIITTNESNKNMNVNNNKSIDITTKNV
FT                 TNRVSRTYNTRSKSKKS"
XX
SQ   Sequence 5067 BP; 1973 A; 751 C; 1037 G; 1306 T; 0 other;
     gcgtcagaag tggttgtgag accttcgtgc catttgggaa aaaaaaaaaa aagaagaaat        60
     ataataaaat aataacaata agtttttgaa atagtcaaat tgattcatta tggacacaat       120
     aaacataaac gattacacag caattgaact acgcgaatgg tgtaaatgtt tgcttttgcc       180
     gtctcacggc aataaaaatg aacttgcagc ccgtttaaac aaattaagtg ctgatcatcg       240
     tggagagtgt ccgaagacaa aacatattga tttgattaaa aatccaaaaa ttttatgtga       300
     cattccacaa aattctaatg aacacgaaat cgaaaagcaa caagacaatt taagtgaaga       360
     caaacccgaa aagaaaaaac aaagttcaaa agaagcagca gaaatgttac agggcacaga       420
     cgaaatgcaa aaccaaaaac agttaggcga cacaaatgat gagacaaaag atcagctacg       480
     aaaacacaac acaaatgaag agacaaaaga tcggcaacta acacgcaata caaatgaaga       540
     agcaatggat cagaatgaga cacaaaagac aaaggaaacg gtagaaaatg aacaggaaaa       600
     attattgggt gcagaagaag cattgaatga ggaccaacaa aacgaaaacg gtggcgccac       660
     taaggaggga aaatactgcg aattaacgaa tgaacgtcag caaatagcaa gcgaaactgt       720
     tgcgatggga agacaactaa acgaaataag agaagccgaa ataatacgca gagagttgga       780
     actcttacgc ttggagaagg aaatacttca aaaagagaac aattttttga aggcaaatga       840
     gagagcgtca tctaaacaag aacaaatggg ggatgaaatc ccattccaaa gcttaagaga       900
     attgttaccg gattatgatg gcgaaacgag tgtcaatgct tggcgtaaac acataaattt       960
     cttgagagaa tcatatcgcc tctcagaaaa taagttgcgt gttttgatct tcagcaagct      1020
     aaaaggaaaa gcacaaaatt ggttacattc gaagccagaa atggtcagtg aatcaattga      1080
     tggtttactt tccgccatgg ataatgcatt tgtatttgag gagagcacaa tcatcctacg      1140
     tcagaagttt gagacccgta aatggaaaag tggtgaatcg ttttcaatgt acttcaacag      1200
     caaggtggaa ttggctaaga gtatcctgtt aacagaaaca gaatttattc aatatgtaat      1260
     ctatgggata ccagatcgtc aaattcgcac aacagccaat atgatgcgtt ttaaaacaaa      1320
     ggaggatttg ctatcatcat tattgcttgc cgagttaaca ccagttcgtc cagcgggatc      1380
     attgaatgtt aactcaaagc caaatgagga ggccaaggga aatctgaacg agaagcagaa      1440
     acttcgttgt tacaactgca actgtgtggg tcatatggca gcaaactgcc gaaagccgaa      1500
     acgagaagag ggtgcttgct atggctgcgg taagatggat cataaggttg cagattgtac      1560
     cgaaaacaag aaaaagaagg atccaactaa tcgttatgga agttctgatt atgtaagtta      1620
     ctttaatgtt gaaatcgacg gtagctctaa ttcccctttt ttcatagagt gtctcataga      1680
     ttctggaagt cctgtcagtc ttataaaaaa gtcatttgtt ccggctgatg tcaaaatgaa      1740
     atctgcgtca gaagccgtgt attttggttt aaataacagt agattaatta caaatggaag      1800
     aatttttgcg ttaattaaaa ttttcaataa agtaacacga cttgaaatgt tggtcgttcc      1860
     taatgaatcc atgagaactt ctattttatt gggcagagat tttctaaact taagtggagc      1920
     caaattgata tggaataaaa gtgacgaaag cgatgagata gataatcctg tggaaaatat      1980
     tgataatgaa ctgcaggaaa aagaatttgc tatgtgtacc gatgattttg aaaagaaaat      2040
     tttcacaatt gaatacgaaa caaatgatat tgatataaac attggagaaa atttatcgaa      2100
     tatagaaaaa actcaattca atgacttgtt tgagaaatat tataccaccc ctgtacgacc      2160
     aaatgagcca gaaacaaaat gcgaaatgaa aataattaca aatgaactca aacctttcag      2220
     ttgtaatcca agacgtttgt cttatgctga gaaaaaagaa ttacagaaga ttttagatga      2280
     atttgttgag aagggataca tcagacccag tgattctgaa ttcgtgtcac cgatagttct      2340
     ggtaaaaaaa gcgtcaggcg aacttagaat gtgcatcgat tttaggaaat tgaataaaat      2400
     gacagcaaag gatagttacc ccataccgct tattgatgac ttgttagacc aattgtcagg      2460
     gaaaaaatgg tttaccaaac tagatttgaa aaacgggttt taccatgttt ttatgcatga      2520
     agattcgata cgatacacat cttttacgac acctttaggg caattcgaat atttaagaat      2580
     gccatttggg cttagaaatg caccttcaac attccaaagg tttgtcaaca aaattttcaa      2640
     tgatttaatt aaagaaggaa aggtgattgt atacttagac gacataatga tcgcgaccga      2700
     agatttagaa acacattttg agattttaaa agaagttttt aaaaggctgg ttaggaataa      2760
     acttgagctc agactcagta aatgtgaatt tttacaaatg aaagtgaaat atttaggtta      2820
     tacgattaca gggagtggaa ttaaagctga tgagaaaggt atagaagctg ttagaaaatt      2880
     tccagtccca accaaagtca gcgaagtaca gagttttctg ggactttgtt catattttag      2940
     aaggttcata caaaacttct ccacaattgc aaagcctttg tatgacataa caaggaaaaa      3000
     taaagaattt caattcggaa aagtagagtt agacactttt gaaactttga aagaaaaatt      3060
     aattgattcc cccattcttg cattatacag tccaaacgat gagacggaac tacactgtga      3120
     tgcaagctca atgggctttg gggctatact tatgcaaaga aaaagtgata agaagtttca      3180
     cccagtccta tacttttcaa aacgaacgtc tgttactgaa tcgcgatatc atagcttcga      3240
     attggagacg ttagctataa tatatgcgtt aaaacgtttt agggtatatt tatatgggat      3300
     aagttttaag attgtcacgg attgcaattc actcacattg acattaagta aaaaggaaat      3360
     aaacccgaga attgctaggt gggcattgga attagaaaat tatgattaca agctggaaca      3420
     tagatcaggc ttgagaatgc aacatgtaga tgcattgagc aggtgtacga acgtaatggt      3480
     gatagataca aactcattcg aggaaaatct catatgtcaa agtaaagatg atcgtatagt      3540
     agagataaaa gcaatgttag aaaagatcga acacaagttc tatgagatgc gaaatggaat      3600
     tgtctatagg aaaaacaata atgatagtat tttattttat gtacccaaag atatggaaac      3660
     gcacgtgttg tacaaatatc ataatgagct tggacatatg ggtacagaca aagtagtgaa      3720
     tgttattatg aaatcatatt ggtttccaaa gttaagagaa aaagtagggc agcatataca      3780
     aaattgttta gagtgtatag cattttcttc aaagcaaggc aaatcggaag gatacttgca      3840
     taatattcca aaagctgata agccatttga gatgatccat atcgaccatt tcggtccagt      3900
     tactacaaaa gacggtaagg ttcgacatgt tttggtaatt gttgatggtt gcacaaagtt      3960
     cgttaggtta tattcagcaa gaacgactaa gtcaaaggaa gcgataacag cattggaaga      4020
     ttattgtaga tcgtacagca gacccaagta tatggtgtct gatcgtggct cgtgctttac      4080
     atcctctgaa ttttccgatt atttagaaac ttgcaaaata agtcatatta agattgccac      4140
     cggttcaccc caggcaaatg ggcaagtaga aagaatcaat cggagtctag gtcctatgtt      4200
     ggcaaaacta ttgagttcag ataataaaca cagttttgac aaagttttag aaatgataga      4260
     gtttacatta aataatactg tacatagaag cataggccaa caccccagta ttatgttatt      4320
     tggaacagaa caaaaaggcg ctctaattga tggtcttaaa gaaaccttac aaggacactg      4380
     cgaaaacgaa agaattgaaa ttataagaga agaagcgaga aaaagggaaa aacaattaca      4440
     gagctataac gaaagaacaa aaaatgaaaa gaggaaaaaa tcgattgtat acaaattagg      4500
     agattacgta gttgtaaaaa actttgactc tcacacaggt atttcaaaaa aactggtccc      4560
     aaggtttaga ggtccattta aagtaataaa agtattaggc aacgatcgct atattgtcga      4620
     ggacgtagac ggatttcaac aatctagggt cccatattca ggagtttggg cttcggccaa      4680
     tatgaaacca tggctcggtt ggttggaaaa tgaaagggat gatcaagaca atgatgaatt      4740
     cgagttagat gaaaaagaag aggagcgaac aaatgaaacg tcaaatgaaa atgaaaaagt      4800
     aaacgaacaa tcaaacggaa tgtcaaaaga aaacatagaa ataagcttaa aaaataaacc      4860
     cactgtaagg ataaaaagaa atgaaattat aacgaccaat gaatcaaata aaaacatgaa      4920
     tgtaaataat aataaaagta ttgatatcac aacaaaaaat gtaacaaata gagtaagtcg      4980
     aacttataat actagaagta agtctaagaa aagttgattt gtatttaaaa agaatcagga      5040
     gatccttgac ggtcagaatg gccgaat                                          5067
//
ID   Gypsy-16_DAn-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   AAPP01016063;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DAn_;
KW   Gypsy-16_DAn-LTR; Gypsy-16_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-196
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01016063; Positions    1293    1098.
XX
SQ   Sequence 196 BP; 60 A; 30 C; 40 G; 66 T; 0 other;
     tgtagcagta tgctaagtca cactcatgta catatatcat atcatatcat tgtattcagt        60
     agttcctagt atttaactgt tagttcttaa gtatgtataa gcagtttgtg aagtaaggag       120
     gaatgagcaa aaaccgataa taaaagaatc agtcttgtgt tagctctgga actgtgcggg       180
     tgtcttctct gctaca                                                       196
//
ID   Gypsy-16_DAzt-I repbase;    DNA;    INV; 4944 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4944
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 797-797 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..4934
FT                 /product="Gypsy-16_DAzt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MDGLDSNNYTLVGLKSWCARLGLPTEGTKAALIAVLN
FT                 NIPANERGSGPIIDNQGAIPKKDMEISNAIIEIGDHSGEFGRDALPIASCS
FT                 SVSDKDKYTDLLTDFDAHNETPQKKESPMEALMQSTKNKSLKFKEDNNGED
FT                 NKEEIETAEEVGSTSPLSILSSEMTTFATLEQTIDKLQRENEQLRNKSAVP
FT                 FNVIKECIPEFNGEGDIENWLSCVKNVQCIFKVDDDTMRSLICARMKGKAS
FT                 TWFFMNYSPLSSGIDEILTQLRIMFGNKDNILEIRRKFEQRKWQHDEKFVV
FT                 YYHEKLLLAKDLNMSEAETVQYLIDGIPDQLMRNQATLQCFASAEAMLRAF
FT                 QHVNRPRPPPTKMRPYSLDNKKYTGPQSEVNQSVANTTLQAIKCYNCHSMG
FT                 HSAAECRKPVRPDGACYACAQYGHMAKDCKLYKKNKSEPNNDYVRCYNVIF
FT                 PHSSNKVYSIECLLDSGSPITFLKYSIVPEGLQISTNEENGNYVGINNSKL
FT                 NIFGKTFCLIETSNKTVEIEVMVVSNESTRHNMVLGRDFLELSNLRLVSMD
FT                 DVKNKLIKEKWNNNCVQPVRDGYLKTAKCRRQCIEPKVESKVEPKVESKVE
FT                 SIEADLKKKVNVASDHKVIPNDKNNRTNAKSVLLIKDHENVDVNVKIASND
FT                 FEKEMLSINVVQDSDVMYKVGEGINYKVREHFERMFKEQYLLANRSIEPKI
FT                 KTEMKITVENEKPFNCPPRRLSFKEKEEVQRILDENLELGYIRPSESEFVS
FT                 PIVLIKKKTGELRLCVDYRRLNKVTMKDNYPIPLIDDLLEKLANKKFFSKL
FT                 DLRNGFHHVFMHEDSIKYTSFTTPLGQFEYTRMPFGLKNASATFQRYINKI
FT                 FTDMVKDGRVIIYLDDIMIATEDTDTHLNILKEVFKRIVDNSLNLRQDKCE
FT                 FLLSSVKYLGYTITNKGICANETGIEAVTNFPIPKKVHEIQSFIGLCSYFR
FT                 RFIKDFAIIAKPLYDATRKDKKFQFGEVELDAFHTLKSKLVETPILAIYRP
FT                 HDETELHCDASSLGYGAILLQRKNDGKFHPIFYFSKRTSDVESRYHSFELE
FT                 TLAIINALKRFRVYLQGIKFKIVTDCNSLTLTLNKKELNPRIARWALELQN
FT                 YDFDLEHRSGKRMQHVDALSRNNNILIIETNTFEDNLIISQSRDEKLEKIK
FT                 NLLLEREDEYYEMRNGVIYKKHNEGLLFCVPDAMIESILYKYHDEMGHVGV
FT                 DKVTDLINKSYWFPQIRKKVDAHIKNCVKCIAFSSKTGKKEGFLHSIPKGT
FT                 TPFKVVHIDHYGPINSGDSKKKHILLVIDACTKFIRLYPTKTTSSKEAIDA
FT                 LNDYFKAYSRPKHLVSDRGSCFTSHEFQFFTESLNINHIKIATGSPQANGQ
FT                 VERINRDLGPMIAKIRDVEKNEQWDKVLDKVEFAMNNTKNRSIDEYPSVML
FT                 FGVLQKGNSIDSLKENILEENQNSDQRDLEHTRCRAAIVQEKIQAYNKNYV
FT                 DSKRQKPKVYSIDDYVMIRNFNSQPGTSSKLVPKFKGPYRISKVLENDRYV
FT                 VRDIEGFQQTQIPYSGIWAVHNIKPWLCDSNVNNELANENISDEQESDENN
FT                 NDEEISGPKNDIISSKKQQQNTIKIDAKKKIAESSIVTRGMAKRIRRSSTS
FT                 G"
XX
SQ   Sequence 4944 BP; 1900 A; 888 C; 937 G; 1219 T; 0 other;
     atttcagaag tggttgaatt aacgccaact aaagtaaaag ctaccactcg tattaaataa        60
     aaagaaactt taaaaccatg gatggactcg acagtaataa ttatactctt gtcggattaa       120
     aatcctggtg tgctcgcttg ggacttccca ctgaaggcac caaggctgcg ctaatcgcag       180
     ttctcaacaa cattccggct aatgaacgtg gatctggacc gatcattgac aaccaaggcg       240
     ccattcccaa aaaagatatg gaaatcagca acgccataat agaaattggt gatcattctg       300
     gagagttcgg ccgcgacgct ctacccatcg cttcgtgcag cagtgtgtca gacaaggaca       360
     aatatactga cctgctcact gacttcgacg cacacaatga aacgccgcag aaaaaggaat       420
     cgccgatgga agcgctgatg cagagcacca aaaataagtc gttaaaattc aaagaagata       480
     acaacggaga ggacaacaaa gaagagatag aaacagcaga agaagttggc agcaccagcc       540
     ctttatcgat acttagctca gaaatgacca cttttgcaac actggaacaa accatcgata       600
     agctgcaacg tgagaacgaa cagctgcgca acaaatcagc tgttccattc aacgtaataa       660
     aagaatgtat tcccgagttc aacggtgaag gagacattga gaattggcta tcctgtgtaa       720
     aaaatgttca atgcatcttc aaagttgacg atgacacgat gcgctcactt atttgtgcgc       780
     gcatgaaagg caaagccagc acttggtttt ttatgaatta ttcacccctt tcttccggca       840
     tcgatgaaat tcttactcag cttcgtatca tgtttggaaa caaagacaac attttggaga       900
     ttcgtcgcaa atttgaacag cgaaaatggc aacatgacga aaagtttgta gtttattatc       960
     acgaaaagtt gttacttgcc aaagacctga acatgagcga agccgaaacc gtacaatacc      1020
     tgatcgacgg aatcccggat caactaatgc gaaatcaagc tacactacaa tgttttgcct      1080
     cagcagaggc catgcttcgg gcattccaac atgtgaatag accccgtcca ccaccgacga      1140
     agatgcgccc ctattccctg gacaacaaga agtacacggg accccagtca gaggtaaacc      1200
     aatcggtggc caacactacc ttacaggcca tcaaatgcta caattgccac agtatgggcc      1260
     actctgctgc ggagtgccgc aagcctgtac gtccagatgg agcttgctat gcttgtgctc      1320
     aatacgggca tatggccaag gactgcaagc tgtataagaa gaacaagtca gaacctaaca      1380
     atgattacgt aagatgttat aatgtaattt ttccccatag ttctaacaaa gtatattcca      1440
     tagaatgcct cttagactcg ggaagcccaa ttacattttt gaaatactca atagttccag      1500
     aaggtctaca aattagtacc aatgaagaaa acggaaatta tgttggaatt aacaatagta      1560
     aattgaatat ttttggaaaa acattttgtc ttatcgaaac gtcaaataaa actgttgaaa      1620
     ttgaagtaat ggtcgtaagc aacgagtcta caaggcataa catggtacta ggtagagatt      1680
     tcttagaatt aagcaactta agattggtgt caatggacga tgttaaaaac aaattaatca      1740
     aggaaaaatg gaataacaac tgtgtacagc cagtaagaga cggctattta aaaacagcaa      1800
     aatgtagaag acaatgtata gagccaaaag tagagtcaaa agtagagcca aaagtagagt      1860
     caaaagttga gtcaatagaa gcagatttaa aaaaaaaagt caatgtagcg agtgatcaca      1920
     aagttatacc taatgataaa aataacagaa caaatgcaaa gtcagtatta ctcataaaag      1980
     accatgaaaa tgtagatgtc aacgtaaaaa tcgcatcaaa cgattttgaa aaagaaatgc      2040
     tttctatcaa cgtggtgcaa gatagcgatg ttatgtacaa agtaggagaa ggcataaatt      2100
     acaaagtaag agaacatttt gaacgcatgt tcaaagaaca gtatttgcta gccaacagat      2160
     ccatagaacc taaaataaaa actgaaatga agataactgt ggagaatgag aaaccattca      2220
     attgcccgcc gagaagatta tcattcaaag agaaagaaga agtacaaaga atattagacg      2280
     aaaacttaga attaggttat atacgcccca gtgaatcaga atttgtctca ccaatagtat      2340
     tgattaagaa gaagactggt gagttgagat tatgtgtaga ttatcgacgc ctgaacaaag      2400
     ttactatgaa agacaattat ccaatccctt taatagatga tcttctagaa aaattggcaa      2460
     acaagaagtt cttttccaaa ctagacctga ggaatggttt tcatcatgta ttcatgcatg      2520
     aggattccat caaatatacc tcgtttacaa cgccccttgg acaatttgaa tacaccagaa      2580
     tgccattcgg tctaaaaaat gcatctgcca catttcaaag atatataaat aagattttta      2640
     ctgatatggt aaaagatgga agagtaatca tttatttaga cgacattatg atcgctacag      2700
     aagatactga tacacacctg aatatactaa aagaagtttt caaaagaata gttgacaata      2760
     gtttaaatct tagacaagat aaatgcgaat ttttgctatc ttccgttaaa tacttaggct      2820
     atacaatcac taacaaaggc atctgtgcga atgaaacagg tatagaagcc gtaactaact      2880
     tcccaatacc aaaaaaagtt cacgaaattc aaagcttcat tggtctatgt tcctatttta      2940
     ggaggttcat caaagatttt gcaataatag ctaagccatt atatgatgcc acaagaaaag      3000
     ataaaaagtt tcaatttggc gaagtagagt tagatgcatt tcatacttta aagagtaaac      3060
     tggtagaaac tccgatttta gctatttacc gtccgcacga tgaaaccgag ctgcactgtg      3120
     atgcaagctc tttaggctat ggagccatac ttctacaaag gaagaatgat ggtaaatttc      3180
     acccaatatt ttacttttcc aaaagaactt cagatgttga gtcaagatac catagcttcg      3240
     agctagaaac actagcgatt ataaacgcac ttaaaagatt tcgtgtttat ttacaaggca      3300
     ttaaattcaa gatagtcacc gattgtaatt cattaacttt aacattaaat aaaaaagagc      3360
     tgaaccctcg catagcgaga tgggcacttg aattacaaaa ctatgatttc gatctcgagc      3420
     acagatcggg caaaaggatg caacatgtag acgcactcag taggaataac aatattttaa      3480
     taatagaaac aaacactttt gaagataact taataatatc acaaagtaga gacgaaaaat      3540
     tggaaaaaat taaaaatttg ttgctagaaa gagaagatga gtactatgag atgcgcaatg      3600
     gtgtaattta taaaaaacac aatgaaggac ttttattttg tgtaccagac gcaatgattg      3660
     agagcatttt atacaagtat cacgacgaaa tgggccatgt aggagtagat aaagtaacag      3720
     atttaataaa caaaagctat tggtttccac aaataagaaa gaaggttgat gcacatatca      3780
     aaaactgtgt gaaatgcata gctttctctt ctaaaaccgg caaaaaggaa ggatttttac      3840
     attccattcc caaaggcaca accccattca aagtcgtcca cattgaccac tatggtccca      3900
     ttaacagcgg tgattctaag aaaaaacata tactcttagt gatagatgcc tgcacaaaat      3960
     ttataagact ctatcccacc aaaacaacca gttccaaaga agcaatagat gcgttgaacg      4020
     attatttcaa ggcttacagt cgacctaagc acttagtatc tgatagaggc tcttgtttta      4080
     catcccacga gttccaattt tttacagaat cactaaacat aaatcatata aaaatagcaa      4140
     caggctcacc acaagcaaat ggacaagtgg aaagaatcaa tagagattta ggaccaatga      4200
     tagccaaaat acgagacgta gaaaaaaatg aacaatggga taaagtattg gacaaagttg      4260
     aatttgctat gaataataca aaaaatagaa gtatagatga gtatccgagc gtaatgctct      4320
     ttggtgtttt acaaaaaggt aacagtatag acagtttaaa agaaaatata ctcgaagaaa      4380
     atcaaaatag cgatcaaagg gatctggaac atacaagatg cagagcagca atagtccaag      4440
     agaaaattca agcgtacaat aagaattatg ttgactcaaa gagacaaaaa cctaaagtgt      4500
     attcaattga tgattacgtt atgatcagaa acttcaactc acaaccagga acgtccagta      4560
     aactggtacc aaagtttaag ggaccatata gaatttcaaa agttttagag aatgataggt      4620
     atgtagtccg agatatagaa ggtttccaac aaacacaaat tccctattca ggaatttggg      4680
     ctgtccataa tattaaacca tggctctgtg atagtaacgt aaacaatgaa ttagctaacg      4740
     aaaatataag cgatgaacaa gaaagcgatg aaaataataa tgatgaagaa atatctggtc      4800
     ctaaaaacga cataatatca agcaaaaagc aacaacaaaa tacaataaaa atagatgcaa      4860
     aaaaaaaaat tgctgagagt agcatagtaa caagaggcat ggctaagaga atcaggagat      4920
     cctcaacgtc aggataggcc gagt                                             4944
//
ID   Gypsy-16_DAzt-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-254
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 820-820 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 254 BP; 102 A; 50 C; 42 G; 60 T; 0 other;
     tgtagcagta ctatccccat accactgtac atattcctta gctaactgta attaacccca        60
     actaatatta ctgtatatat tatgatgctt aagcccactg tactgtactc gcaatacata       120
     cacacttgta atatactctc cgaatagaat aagaatagaa taaggaaaca agaagaaaag       180
     agaagaataa aaagaaaagc gagatcagtt tgaatcgagc gaagaagacg aacagacgtg       240
     ccgttcagac taca                                                         254
//
ID   Gypsy-16_DBi-I repbase;    DNA;    INV; 4234 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DBi_;
KW   Gypsy-16_DBi-LTR; Gypsy-16_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4234
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 849-849 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1998-2426] - Reverse transcriptase
CC   Positions [3325-3801] - Integrase core
CC   'CAGC' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           717..2561
FT                 /product="Gypsy-16_DBi-I_1p"
FT                 /translation="MFWNELQKFIFAKRSLQGLAKMFANSERELTSWVKLK
FT                 QALLAEFKTATNSAQLHNLMAERKIKKGEGLQEYFLHMKELASRGNIESSA
FT                 LIQYVIDGIDDSCANKLALYNAKSLSEFKDKLKCYEVIRGKSKSENKSQFT
FT                 FSKANKSEAKNEFKNQAVPNRNTSRDLKCYNCGAKGHTSANCENKNKGRKC
FT                 FQCNNFGHIAKECPAKSLSDKMESTNMCKVSTSHAFMCITVEANNVKFTAL
FT                 IDTGSKYNLVTDTTFKNLKKPKLSECNVYLIGFGKSDQNKIKPSGSFEHEI
FT                 TIDGEQFVTKFLVVESQFLDKEMVLGEEFCKQAQLTISSEGVKVTKPRSAD
FT                 AEISSIFKIDTEDCEAVVTDIEPSASVKAKEVVYKAVQNYQPVSTKSTNIQ
FT                 MRLILNDDMPIHSRPRRLSYAERCIVDKQTDQWLRDGVIEISESEYSSPVV
FT                 LVKKRDGSHRLCIDYRRINKLIVRDHFPLPLIEDQLDRLQDARIFSSIDLK
FT                 NGFFHVGIEEESRKYTSFVTHNGQFQFLRVPFGLSNSPSVFQRHVNAIFRD
FT                 LTCKGVAIPYVDDIIIPAKTEKEAVENIIEVLKRCSEYGLLINFKKCHFLK
FT                 TKIEYLGHIIENPKHML"
XX
SQ   Sequence 4234 BP; 1446 A; 896 C; 923 G; 966 T; 3 other;
     cagccaggtc aaccaataaa agccaagagt gaaagcgaaa aagaaagtgc agaaaagatc        60
     gagaaatcac attatcggaa aagtttaact ccgctaaact taaagctcgg aagggtgcga       120
     tccgcataaa aaacgcagcc ggcaatcaag cgtttgcgaa tacacataca atttctgata       180
     tccatgagcg tccgtgagag tgcaaaatga caaaattgaa cgagtttgat agtattagtg       240
     cgatgcttcg cgatgaaaaa aagcaaaata tcctactttt gcacaagttt gtttttgaag       300
     aagacgggga cagaaacaat agaaaacggt tgcgcgagtt tcaaggttac gaatatgacg       360
     aatcacacag aaattattcg aagaaagtca attataactt gctcaaactt ccccatgcaa       420
     tttgcaattt gcaaaaagat tccttnttgg tcgacgcaga attcaacgag aacgatgaag       480
     atgaaaacga agatgatgaa tccgaagacg aaagggacga gaatcaagca gcagacgcca       540
     taagcgttcg aagcattagc agtgccaaaa acaaccgcga gacaagcagt ttttctgaaa       600
     taccgaggtt cgctctaaac tttcgtgaca tagaggactc agtccgcgcg ttcagtggcg       660
     aagacaattt gtcggtcgaa gtgtgggtga aggaatttga ggacacggcg acaattatgt       720
     tctggaacga attacaaaag ttcatttttg ccaagcgatc gctgcaaggc cttgccaaaa       780
     tgtttgccaa tagtgagcgc gaactaacga gttgggtgaa actaaagcaa gccttactgg       840
     ccgagttcaa gaccgcgaca aacagtgctc agttacacaa tttgatggcg gaaagaaaaa       900
     ttaaaaaagg ggaaggtctg caagaatatt ttttgcatat gaaagaacta gcttcaaggg       960
     gaaacatcga aagcagtgcc ttaatccaat acgtaatcga cggaattgac gattcgtgtg      1020
     caaataagct agcgctctac aacgcaaaaa gtctgagcga gtttaaagac aaactgaagt      1080
     gctacgaagt aatccgcgga aaatcaaaaa gtgagaataa aagtcaattc acgttttcaa      1140
     aggcgaacaa aagtgaggca aaaaatgaat tcaaaaacca agcagtgccc aacagaaata      1200
     caagcagaga cctaaagtgt tacaattgcg gcgcaaaagg tcacacatct gcgaattgcg      1260
     aaaacaaaaa caagggacga aaatgttttc agtgtaacaa tttcggacat atcgcaaaag      1320
     aatgcccagc aaagagtttg agtgacaaaa tggaatcaac caacatgtgt aaggtgtcaa      1380
     cttctcacgc gtttatgtgc atcactgtag aggccaataa tgtaaagttc accgctctga      1440
     tcgacaccgg aagcaagtac aatttggtta ccgataccac atttaaaaat ctaaaaaagc      1500
     caaagttaag tgagtgcaac gtttatctca tcggtttcgg taaatcagat caaaacaaga      1560
     ttaaaccatc gggttcgttt gaacatgaaa ttacaattga cggtgaacaa ttcgtaacga      1620
     agtttcttgt ggtcgagtcg cagttcctgg acaaggagat ggttcttggt gaagagtttt      1680
     gcaagcaagc tcaattgaca atttctagtg aaggcgtgaa agtaaccaaa ccacgtagtg      1740
     ccgacgcaga gatcagttcg atttttaaaa ttgacactga agactgcgaa gcagttgtaa      1800
     ctgacatcga accatcagca agcgtaaaag ctaaagaggt agtatacaaa gccgtccaaa      1860
     actatcaacc ggtaagcacg aaatccacaa acattcaaat gcgtttgatc cttaacgacg      1920
     atatgccgat acactcacga cctcgaagac tttcgtatgc cgagcgatgc atcgtagaca      1980
     aacaaaccga ccaatggctg agggacggtg taattgaaat ctccgagtcg gaatacagca      2040
     gcccagttgt cctagttaaa aaacgtgacg gatctcatcg cctatgcatc gattacagac      2100
     gaatcaataa actcatcgtc agagaccatt ttcctctccc tttgatcgag gatcaacttg      2160
     acagattaca ggacgcgcgt atttttagct cgattgattt gaaaaacggg ttcttccacg      2220
     tcggtataga agaagagagt cgcaagtata cgtcgttcgt cacacacaac ggacagtttc      2280
     agtttcttcg agttcctttc gggctctcca attcgccgag cgtattccaa cgacacgtga      2340
     atgctatctt cagagacctg acttgtaaag gagtggccat accgtacgtc gacgacatta      2400
     taatccctgc aaaaacggag aaagaagctg tagaaaacat catcgaagtt ctaaagagat      2460
     gctcagagta tggactttta attaacttca agaaatgtca ttttctgaaa accaaaatcg      2520
     agtacttggg tcacataatt gaaaatccga aacacatgct gtgacatcgt ttcctgttcc      2580
     gactaacctg aaacagctac agagtttcct tggcttagtg ggccatttcc gaaagttcat      2640
     cgccaacttc tcgcagatag ctaaaccctt atctgacatg acgaaacaag atgcgaaaat      2700
     tcatttcggt gaccaacagc tagatgcgtt taacaaatta aaggttctta ttacgcaaaa      2760
     accagtccta aaaattttcc atcagcagca cgagactgaa ctccatacgg acgcctcaat      2820
     cgatggattc ggcgcagttt tgctgcaaaa aagtacggac gataaccagt ggcatcctgt      2880
     atattatacg agcaaaaaga cgacagatgc tgaaaggaag ttcaccagct acgagctcga      2940
     agtcttagct gttgtggaag ccttcaaaaa gttcagggtc tacttactta catccaggct      3000
     caagacgacc agcttaaagc catcatagac attctagcag aaaagacgac ccataacaat      3060
     tacttcttga aattgggaat cttacacaaa gtggttgacg actgtgaact cattgttgtt      3120
     ccttcgggta tgcaacgagn aattatcaag caagcacgcg aacacggtca cttctctgtc      3180
     aagaagtgta aagagatcat tggcaaggag ttctacatac cgaagctgga agagaagatt      3240
     cagaagtgta taagctgctg tttaccatgc attgtcagca accgtaagca gggaaagcaa      3300
     gagggcgaac ttcatccgct cagcaaggac gaaaaaccgc tgcagacgta tcacatcgat      3360
     ttccttggcc ctttggagtc gactcacaag cagtataagc acatacttgc agtaatcgat      3420
     agtttcacca aattttgctg gctctatccg accaagacga cctctaccaa agatgctgta      3480
     tcgagacttc aggagcaaag caaaatcttc ggcaatccta gtcacataat ctctgacaaa      3540
     ggatctgctt tcacgtcgga ggaatttcaa ctgtactgca acaccgaagg catcaagcat      3600
     catctcatca caacaggtct tcctcgtgcc aacggtcagg tcgagaggct aaacacgaca      3660
     ataattgctg tcctttcaaa actttcaatc gctgatccac gacaatggtt caagtttgtc      3720
     agcagcgtac agcaagtcat caactcaaca ttttgcagaa gcactaaaac aacgcctttt      3780
     gagttactta cgggaaccaa gatgcgtctc aaagccgaca tacatatcca gcaaatgttg      3840
     gaagaagaaa tgattcatct tttaacgacg atcgagatga acttcgaaag caagcgaagc      3900
     aacacatatt gaaaatgcag gaagaaaata aaaaaaagat acaacttacg acgaagacca      3960
     gcatcaaagt acaaagtcgg cgacttagtt gctattaaga gaacacagct tgntccagga      4020
     ctaaagctaa agccgaagta tcttggccca taccgcatta taagggtgaa attaaatgac      4080
     acctatgacg tagctaaaga ctcagtattc agcgaaggcc caaggcagac gagcacttgc      4140
     gctgagtatc tcaagccgtg gatgccttat gacgacgatg aagacgacgc attcgaggcg      4200
     aatgcagtgt aggatggccg atttgtggga atgg                                  4234
//
ID   Gypsy-16_DBi-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DBi_;
KW   Gypsy-16_DBi-LTR; Gypsy-16_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-304
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 850-850 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 304 BP; 129 A; 51 C; 62 G; 61 T; 1 other;
     tgtgggaatg gtgtggcaac ccagatcagc tggtctaata acgagagatt ggacaaaact        60
     aacgacgtgg caagcctgcc aaaattgaag agaagaagga attaagaatt tgcaacgacg       120
     aggagaagac gtgcgaaaac gacgcgagta gaaaagacgt gaaaaaacgc agacgaaaaa       180
     ctaagacgca gatttatcca tttaacaaaa cctaattata atactaaaaa ccttacaata       240
     aaactacaat aantataatc aaaaccagtg ggattacgtg tacgttattt taataaccta       300
     atca                                                                    304
//
ID   Gypsy-16_DBp-I repbase;    DNA;    INV; 7320 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-7320
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 681-681 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3434..3907
FT                 /product="Gypsy-16_DBp-I_1p"
FT                 /note="retropepsin."
FT                 /translation="MSMTRGATRIDPRPYAMVKVAGMEMKGLLDSGASVSL
FT                 VGRGCREWVERLEIPWKPWHAKVRTANGAPQQILGKVVVEVEYKNKKKEIL
FT                 FYLCPSLEQELYLGVNFWQEFEIATELFEVDEVEMAQEETSRTAAEQGKHE
FT                 HHKLSEAESSTWRESKNPS"
FT   CDS           3945..6221
FT                 /product="Gypsy-16_DBp-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MKHTIELTEGPPYQGSALSRSPAVQTLIYQEVDEMLR
FT                 LGVIEESDSAWSNTITLVRKPGKNRLCLDARKLNKITIKDAYPQQNIEGIL
FT                 SRIETTRYISSMDLKHAFWQIELDDASKRYTAFTVPGRPLYHFVVMPFGLT
FT                 NAAQRLCRLMDKVIPQELRESVFVYLDDLLVVSENFQDHMRTLEEVSRSLK
FT                 AAGLTIGLKKSHFCFKELRYLGYVIGGGVVRTDPEKVEAINRVTVPKSAKE
FT                 VRRFLGMAGWYRRFIRNFAELAAPLTDTLRKGKFVMTEEAERSVKMLKEAL
FT                 TTAPVLRHPDFKSMFYVQCDASDTGVGAVLFQKAKDEGERPIAFFSQKLNP
FT                 AQRNYSVTEKECLAAVLAVERFRPYVELMPCKLLTDHSSLQWIMSVKNLAG
FT                 RLARWSFKLQPYQMAIEHCKGTENVVADTLSRMLEAVEEPEEDWMLGFQTT
FT                 EFESPEYVELRQVLESEKERFPDVKVVDGYVFKRTECRTAAELEENTWKLW
FT                 VPASLSVAMIDQAHSPPNKAHGGMGKTLHRLRQRFYWPGMVAQVRAFVRDC
FT                 RTCKETKPTNSGPRPGIGAETVTYRPFQKLYIDFLGKYPRSRKGHAYIFVV
FT                 VDHFSKYVFLKAMKEATTAEVVKFLVGEIFHTFGVPETIHSDNGKQFVAKR
FT                 FKEMAEEFHIRHVRTAVYSPQSNAAERVNQSVLNAIRAYLDQDHRDWDLYL
FT                 TEIEAALRTSVHTATGVTPHFPLFGQHMFTDGTDYQVARRLKALEDNESFV
FT                 CPHRKEWR"
XX
SQ   Sequence 7320 BP; 2152 A; 1470 C; 2111 G; 1558 T; 29 other;
     cgggtgttgg acttaggggc ggacgcgaga aaaggccagc gttccgctaa ggawgggagg        60
     gaaggccacg aaactccaag tcaacaggag tattaaaaat ctgtgattcg atagggtaag       120
     cataaatgtt acgtgtgtta gtattasgag tcttgaattt gaatgttgtk gkagtttcag       180
     tgttgagtaa tktccgakag acctttgtgt ttttwggatw aatttattgt taacggtcag       240
     ttgggaaggg tcaggggagc cacggccscg gatgagctag ccggagccag acccatgccg       300
     ataggcggac cgtcggaccc gaagtggtca taacaatatg gcgcccgatt ktaaatcaac       360
     kctatagcct ccacaagagg aacatctact tttatagtcc agagaactag ataggtgacc       420
     gctcgagagg cacccaaata gcatgtctct ggactgcaaa gatagatgga agaaagaaaa       480
     tctaagwatt caactttatt catggcagta aggatcgtgg ttgattattg actccaaats       540
     cgacgtcaga attggcaaga aaaccaawaa ctgatttgcg cactaggaac caaaaattta       600
     actgtgataa ttactgtgat aaatagatag kattwagctt agggacagat gtttatatat       660
     aggaatgggt gggaaatccg acggctgtgt ttgaaacaat aaagaaatww agacacatag       720
     cgctggaagg gggtaaaaaa cgtcamgatc maaaaataaa agagatcgtt tgcgaagtta       780
     aaggaataaa aataataggg agaataggga atagtaatag ggaactagaa ttaattagtt       840
     tttatataga gttccggatc ccgaaatgga agtcccaaac ggctaaatcc aaatagtcct       900
     tgcgttgctc cgagaaggac caaaatggaa cccttaamaa aaaagaataa aaattaatat       960
     aattctaaaa aaactgaaag gcatcttgac tatcaaccat caataaaatt gatgattaga      1020
     atagtcgaca atgccaaatg ctaacgctta ccctaatacc agggaatcac agatccgaca      1080
     gaaaaacact caatccgaaa ccaagaagtc cttccttata gcccccagtt agaaaattga      1140
     atataagaaa tcgtgattga gaattgagaa tttgttttga taagagtata tgagtgtgca      1200
     attttatgtg agtggtcagt cgtttattta tttatttatt cgtgattttt atttatttgt      1260
     ttatcgtatt tatttattta tttttttgat atatttattt atttattttt ttttgatata      1320
     tttatttatt tattattttt gttattgata tatttattta ttgatattgt tgatagtatt      1380
     ccctagtgtt tatcctttat ttatttagtt gagtatagak ttattaggcg agttaagaca      1440
     gttctcctgg tagataagta aaccaaaact ccgaaatccg aaagagaacc tccgaatcac      1500
     acttccatgg gcggtccgag tctttcaatg ctcgaagaaa gggaaatgga tttggacatg      1560
     gaagggggcg cacagggcgg tacagaacta gagagaccgg tcggctcagc gcacaacaaa      1620
     ggggggcgat tccgagaaac ctcagcctgg accaagcatc cactccatat gggacctatt      1680
     cccatgttca attagacccc atacaggagc aatacagcat ggaaaacgca gaggcctacg      1740
     catcgtttaa tcgtcgggag attcaagccc tcatacacac atcccaagag cagctaaggg      1800
     tggatctcag ccagttggta gatcgaagga tcgacgcgtg catgaggaca ggattcgagc      1860
     agattatccg gaagatagag caaagcaggg aaaagatccc gtcctctaga tcctccgagt      1920
     cctcaatgac gacgcaggtg gagaataatc agccggcagg gtcagcagac ggttcttcaa      1980
     gtacaggaat gcgtcaggag gacaaacgaa aggcggaaaa gccggcaatt tcactagcac      2040
     caccgagctc gatgcgggaa acaacggaga caggggatgc ccgagccgaa gatctgaacg      2100
     tcttccttaa ccgggtaatg gcggaaagaa atcaaagggc ggaagggaat gaaattgggg      2160
     cccggcaccg cgaccgaagg agaccccgca gttcagccaa taggagtttc cttgggtcgc      2220
     aaagagacgg gcctaggaat gaaaagcagg aggggcgtat cgttaccacc gggacaggaa      2280
     tcgcagcaag aagccggcaa tatgtacccg tagataagtg gggttgtcag ttttccgggc      2340
     gtccaggaac gatgagagcg gaggatttcg tattccgagt agaacaccta caaagcagta      2400
     tgcgatgcca tggattgagc tgctacggga cttccaccga ttgctgaccg aggaagcatc      2460
     cgaatggtac tggctactaa taaggacaaa gccgccacac gactggagag aattaaaaga      2520
     agccatccaa cgcagatatt gtgacaacag aagcgattac gatgaataca ggatatcgcg      2580
     gaaaggaaac aacggcaggg agagtcgctg gaagagtatt tcatggccct caatagactg      2640
     gtggcatcca taaaatcagg agtggacaat gattggatca tcaagacggc aaaacgaaat      2700
     ctgctggagc cgatgaggca gtgggtctat ccgatccggg tgtacacact ggaacacctg      2760
     cacgacgaat gtaaggaggt agaacgggtc ctaattccgg agcgaggagc agggtatagg      2820
     caacgcatgg ccactggata caagccccgg gatgatccac gtgtaggaag actggaggag      2880
     gtgcattcct attggacaaa cgaatcagcc gaaggaggcg gaatggaaag gtcggaggaa      2940
     acggtggcag caataaccaa cggcgcaccc cggaaagtga tcaagtgctg gaactgtcag      3000
     caagaggggc acgtttacat ggactgcgaa gcagagcagc gacggatctt ctgctacaag      3060
     tgcgggttgg ccaacaccgt aacgccaaaa tgtccgaact gcaggcaggg aaacgccaac      3120
     aggaacgttg gggtagcggg caaccaacgt tcagcgaagg agcccgaggt ccagaggagg      3180
     cagtgagccg ggttaatata gccaaaagag aatccgtacc cgacaaccaa gatggagccg      3240
     gaaggataga gcaagcgaaa cagaaggtga ttcagagctt ggaggagagg gtgcgacgat      3300
     acaaagaggc gagagagaga atcttccggc agaaccagct ggctgggatg acgatggtca      3360
     cgagaagggt caaaaagatc cgagagcgct ttagaagaag gaaaaaggaa cgccagggag      3420
     taagcagctc ggtatgtcaa tgacgcgagg ggcaaccagg attgaccccc gaccctacgc      3480
     tatggtcaag gtggcaggaa tggagatgaa aggtctgttg gattctggag cttcggtcag      3540
     tttggtcgga agaggctgca gagaatgggt ggagcgtctg gaaattccat ggaagccgtg      3600
     gcacgcaaag gtccggacag cgaacggagc accgcagcaa atcttgggca aggtggtggt      3660
     ggaggtggag tataaaaata aaaaaaagga aatcttgttc tacctatgtc catcgttgga      3720
     gcaagagtta tacctgggag tgaatttctg gcaggagttc gagatcgcca cagaattgtt      3780
     tgaagtagac gaagtggaaa tggcccagga ggagacgagc aggacagcgg cggagcaagg      3840
     taaacatgaa catcataaat taagtgaagc ggagagtagc acctggagag agtccaaaaa      3900
     tccttcctga atttgaggaa agtggattag gaaggaccgc gatcatgaaa cataccatcg      3960
     agctgactga agggccaccc tatcaaggat cggcactatc ccgttctcca gcagtacaga      4020
     cgctgatcta tcaggaagtc gatgagatgc tacgactcgg agtgatagaa gagagtgaca      4080
     gcgcgtggag caacaccatt acattagtcc ggaagccagg aaagaatcgc ctctgcctcg      4140
     acgcccggaa gctgaataaa attacgatca aggacgcata tccgcagcaa aacattgagg      4200
     ggatcttaag tcgtatagag acaacaaggt acatctccag tatggacttg aagcacgcgt      4260
     tctggcagat agagttggac gacgccagca aaaggtatac ggctttcacg gtaccgggtc      4320
     gtccgttgta ccatttcgtg gtwatgccat tcgggttaac gaatgcagcc cagaggttgt      4380
     gtcggctcat ggacaaagtg ataccgcagg aactcaggga aagcgtcttt gtgtacctgg      4440
     acgacttgtt ggtggtatcg gaaaactttc aggaccacat gaggacgctg gaggaggttt      4500
     ccagaagcct gaaggcggca ggactgacaa taggcctgaa gaagtcacac ttttgcttca      4560
     aggagctgcg ctatctgggc tatgtgattg gcggaggagt ggtgaggacc gatccagaga      4620
     aagtkgaagc gatcaacagg gtcacggtgc caaagagtgc caaggaagtt cggcgattcc      4680
     tcgggatggc aggatggtac cgaagattca tacggaactt cgcagaactg gcggcgccgc      4740
     tgacggatac tctgagaaag ggcaaattcg taatgacgga ggaggcagag aggtcggtga      4800
     agatgctgaa ggaggcactg actacggcgc cagtcttaag acatcctgat tttaaaagta      4860
     tgttttatgt gcagtgcgat gcttcggaca caggggtagg agcagtgctg ttccagaaag      4920
     cgaaagatga gggcgagcgt cctatagcct tcttttccca gaagctaaac ccagcgcagc      4980
     gcaactacag cgtaacggag aaggagtgtt tggcagccgt gttagcagtg gaacgttttc      5040
     ggccgtacgt cgaactgatg ccatgtaagc tgctcacgga tcattcgagc ctgcaatgga      5100
     tcatgtccgt gaagaacctg gccggaaggt tggctaggtg gtcgttcaag ctacaaccgt      5160
     accagatggc aatcgagcac tgcaaaggga ccgagaacgt ggtggcagac acgctatcca      5220
     ggatgttgga agccgtcgag gagcctgaag aagactggat gctcggattc caaacaaccg      5280
     aatttgaatc accagaatac gtggagttga ggcaggtgct cgagtcggaa aaagagaggt      5340
     tcccggatgt taaggttgtg gacggctacg tgttcaagcg aacggagtgc agaaccgcag      5400
     cggagttgga ggagaacact tggaagttgt gggtaccagc ctctctgagt gtggccatga      5460
     tagaccaggc gcattcccca cctaataagg cccacggagg aatgggtaaa actctgcatc      5520
     gtttgaggca gcgtttttac tggccgggaa tggtagctca agtccgggct tttgtaaggg      5580
     actgtcgaac gtgtaaggag acgaagccta cgaatagcgg cccgcggcca ggcataggag      5640
     cagagacggt aacctacagg ccattccaga aactctatat agacttccta gggaagtatc      5700
     cgaggtcgcg taaagggcac gcctatatat ttgtkgtggt agaccacttt tcgaagtacg      5760
     tcttcctgaa ggcgatgaag gaagcaacga cggcagaggt ggtgaagttc ctggtgggag      5820
     agatatttca cacttttgga gtcccggaga ccatccattc ggacaatggg aagcaattcg      5880
     tggcaaaacg ttttaaggag atggcggaag aattccacat ccgccatgtc agaacagcgg      5940
     tgtattcccc tcagtcgaac gcagcggaga gagtgaacca gtcggtgttg aacgcaatta      6000
     gagcgtatct ggaccaggac cacagggatt gggatctgta cctgacggaa attgaggcgg      6060
     ctctaaggac gtcggtgcat acggcgacgg gagtaacacc acattttccc ctatttggac      6120
     agcacatgtt cacggatgga acggactatc aggtagcgag gaggctgaaa gctctggagg      6180
     acaacgagtc ctttgtctgc cctcatcgga aagaatggcg ttgatcaggg atgcgtgaga      6240
     aggacttgct ggggcacatg aaaccagtgc aagatgtaca atagggaacg cgcatggtgc      6300
     ggtttcgacc tggccaagaa gtcttccgga ggaattttgt tctcagcgat tttgggaaga      6360
     atttcaatgc aaaatttgca cgaaagttcg taaggtgtcg aatccggaag cctatcgggg      6420
     accacatgta cgaggtggag aatctggacg ggaagacggc gggagtgttt cacctgaaag      6480
     atctgagaca gtgacaagga gagagaaaga ggaaaagata taccaacgag gaggtgcctg      6540
     gaagagaaag gaaataatga atcaggcacc tgaccggtaa agtaggtact tgcgagatcg      6600
     aaggacgctg tcaagcctac aaccccaagc gcagtggcac caaacgtcga gattgggaag      6660
     cagaggttga gtcctaaggg gtcgtctccc acgttgggcg ctgaagatag ggtcctccgg      6720
     aggggccttc tgataatggg tctgctccga aaaggggatt caatcgtcct ttttttccat      6780
     tagcatttga cgttggaaag cktaaagtgc tgtgtggctg ttgtggccga taaataagtc      6840
     ggactaggcg awgccactga gtcggkcatg gtagkcccta gtgatgccac ctagtcggac      6900
     aggtagtaca tgggatgcca cctaggaata tatagggaaa tttgggatat tttttttgga      6960
     ggggttgttg acccgggacg gttcaagtat ggagtaacgg gcctatccga atgaccgttc      7020
     cggggcccag gagaactggg aaagattata tagaaggcaa gtatcgaata gtgcgggcgg      7080
     caaagtcacc tgagccatgg ctaatggatt gcttctttcc agaccgacca gacccattta      7140
     tcctgataag gaagccaggc ctgataagag aaaaattggg cctggcgaat ttttttttct      7200
     taattccggg ttaattccgg gatgtatgaa ccttatgcca gacaagccgg cgttttcctt      7260
     tttggctctt tcaagcggtt ttctttctgc gggccatcaa ctgcgcatgc gcggcccgcc      7320
//
ID   Gypsy-16_DEl-I repbase;    DNA;    INV; 5945 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DEl_;
KW   Gypsy-16_DEl-LTR; Gypsy-16_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5945
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 540-540 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2060-2521] - Reverse transcriptase
CC   Positions [3727-4200] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1649..2659
FT                 /product="Gypsy-16_DEl-I_3p"
FT                 /translation="MEEDKTAQECLNLPSTEDQSVNFAIHNDLRENNEFRL
FT                 EHLNSEEIESLKKVLFEYGDIQYREGENLTFTSTIKHTIQTQHEDPVYRKP
FT                 YKYPQSVDEEVNRQIKEMIEQGIIRKSKSPYCSPIWVVPKKTDASGKKKFR
FT                 LVVDYRNLNEITINDKFPIPRMDEILDKLGKCQYFTTIDLAKGFHQIQMDS
FT                 RSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYL
FT                 DDIIIFSTSLEEHILSLKKVFGKLRDANLKLQLDKCEFMKRETEFLGHVVT
FT                 TNGIKPNPNKTNAITNFPLPKTPKQINHFWDYVDSIASSFQTSLT"
FT   CDS           2671..4488
FT                 /product="Gypsy-16_DEl-I_1p"
FT                 /translation="MTIKLKKGATIDTEDKDYIAAFERLKVLITSDPILIY
FT                 PDFSKTFSLTTDASNIAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELL
FT                 AIVWATKYFRSYLFGRSFEILSDHKPLVWLNNIKEPNMKLQRWKIKLNEFD
FT                 YKIKYLPGKENYVADALSRTKIEELMLGEVANSVDATIHSASEDNLNYISI
FT                 TERPFNYFSRQIELEKGDNDETEVKHYFHKLKIKITYKEMTDDFAKNIIKE
FT                 YVCTKKSAIYFHNDDDFLTFQRAYVQIISPNNLTKLVKRTLILKDILTYAE
FT                 FKNMILKMHKELLHPGIEKTINWFKEEHYYPDSQKLIQNIINECEICNIAK
FT                 TEHRSTKLSFEITPEILNARERYVIDFYMVGNQQFLSCIDIYSKFATLIEV
FT                 KSRDWLEAKRAIMKVFNDMGKPQEIKADKDSAFMCIALQNWLKSEGVDISV
FT                 TTSKNGVSDVERFHKTVNEKLRIISNENNIEDRCTKFEVILYVYNHKTKHN
FT                 TTNRTPADIFLYAGTPDINTQQNKINKIDRLNENRHDFEVNTKYRQAPLVK
FT                 TKITNPFKKTGLIRQVDNKHFEETNRGRKITHYKSKFKKQKKINKSKYDNS
FT                 RQTEEDET"
FT   CDS           4454..5908
FT                 /product="Gypsy-16_DEl-I_4p"
FT                 /translation="MIIPDKPRKMKHNQVIPILSLILISLISTTKAQSIEI
FT                 SPINAKNGYLIFKTGSMEIPTNFEYHHLSINLTKTEMTFDNLLDEAKEFQH
FT                 IVQIQYLVEKLKREMNGLRIVRRSKRGLLNVVGSVYKYLFGTLDEDDKEEL
FT                 ETKINNLADNSIQNHDLNMIIDVVNNGLDLINKLEESKNKQEQAAVLIFNL
FT                 QQFTEYIEDIELGMQLTRLGIFNPKLLKHDYLKQVNSEKLLKVKTSTWLKT
FT                 DTNEILIISQIPNEITKTPVYEIIPYPDEFDNILTENTFDKYYIYEDKVFN
FT                 ENTGQIIFDKCIIGILKQEPTKCKYVKTHKNFQINYIEPNILLTWNIQKST
FT                 INQNCISTEVSIVGNNIVKIKNCTIQLDEFIISNNIADYTQSIYVNNNITK
FT                 IEPLSYIQTKEIVESHIKYYNTFQIICLTTFVITIISLTLYLIYKFKNIPK
FT                 KLIVKYSKREEQPIIENKNVKTTEENIVAENIMLYPTLSP"
XX
SQ   Sequence 5945 BP; 2498 A; 1013 C; 914 G; 1517 T; 3 other;
     twtaattggc gcagtcggta ggatctaaaa ataaagtcct tttaaatacg gtactgatca        60
     acaaaaagat atactacaca actagttatc ttgatcagcg aattgaataa agtgcactta       120
     aaaagatccg caaaagaatc tacgtgacgt aaaacctacg agtggtcata agacatccaa       180
     aaaaatccaa ttcggtcaga aataaaaaca ttctgaaaat aaaattacgt gacgtaaaaa       240
     cctacgagta gtcataaaac atccaaaaat ccaattcggt cagatataaa cattttaaga       300
     agcccaaata aaaactcaag acaagatggc agtccaacag ttatcagaga tccatctgaa       360
     ccagttactg ggtcagatca aggagctaca gtacttcgat ggaacaccag gaaaactctc       420
     aggattcatc aacgaagtcg aatatttgtt acaactgtac ccaacccaag aaccaagaca       480
     ggcacacgtc atttttggag ccatccgaag agtgatagtc gacacagcag cagaaaccgt       540
     cgcacaatct ggagccaaca actgggtaac aatgaagaca gctttaacca ccgccttcaa       600
     agatcacagg ccctacgaaa caatcatcaa gaagctggcg gaaacacaat tcaaagggag       660
     tcttagtaag tttataagcg aattagaaaa acaatatagg aatgtgttcg ataaattaga       720
     attagaatct gatccatcag ataaaataaa ctatacaaga atgttggata gaacagttca       780
     tattaccatt gatcgaaaac ttcccgatcg catgtatatg tcactagcaa gaaaagatat       840
     aaccagtatt ccaaaattaa aacaagcwtc tatggagtta ggattttatg atgcaaatcc       900
     agaagaagaa tatgcacaaa atagaaataa ccataaaaat cataggaaca aaggaaaata       960
     tcagagtaat aatcaaagat attacgataa tcaaagaaat ttaagttcgt attacaattc      1020
     caattcaaat tctaattcta atgcaacaac ttcccagaat aaccaaaatc aatatcaaca      1080
     acgtcccatt cccccacact tgcaaggcaa ttaccaaaca tttagaaaca gtttgaatca      1140
     agccagacta caaaacccga ataaccatca aaattcgaat gatcaggcta atacaaatag      1200
     atttagtggt gccccagtaa aaagacaaag ggaaagtcaa agtggccaaa ataggatgga      1260
     cgtaaatttt catcaaactg cctcggagac cgaagacaca atccatatgt aaaaattgtc      1320
     tttcacaata aattttataa gggaatgata gacacaggat catcaatcaa cataatgaat      1380
     aaaaattttg ctaaattaaa agagacaaaa gaagatttaa aagtgtatac tattagaggt      1440
     ccagtaaaaa tacataaaag tatcatagta aaaccaagcg taacatgtcc atcagaacaa      1500
     aaattttatt tacataaatt ttccgataat tatgatatcc tgttaggtcg aaattaccta      1560
     gaagctgcta aagcaaaaaa ttgactatga aaacaaaaca attaaactag gcccaaaaac      1620
     atataaattc cgatacaacg acgaagacat ggaagaagat aagaccgcac aggagtgcct      1680
     taatctacct tctacagaag atcaatcggt aaacttcgcg attcataatg atttacgcga      1740
     aaacaatgaa tttaggctcg aacatctgaa tagcgaggag attgaaagtt taaagaaagt      1800
     tctatttgaa tatggtgaca ttcagtacag agaaggtgag aatttgactt tcacaagtac      1860
     cattaaacat acaatccaaa ctcagcatga agacccagtt tatcgtaagc catataaata      1920
     cccccagagc gttgacgaag aagtaaatag gcaaatcaaa gaaatgatag agcagggaat      1980
     aattcgtaag tcgaaatctc cttactgttc acctatttgg gtcgttccaa aaaagacaga      2040
     cgcgtctggc aagaaaaagt ttaggttggt tgtagattat aggaatttaa acgaaatcac      2100
     tatcaatgat aaatttccaa ttcctagaat ggacgagatc cttgacaaat taggaaaatg      2160
     ccagtatttc acaaccatag atttagctaa aggatttcat caaatccaaa tggacagcag      2220
     atcaattgcg aaaaccgcat tttctacgaa acatggtcat tacgagtaca ctcgaatgcc      2280
     attcggcctt aagaatgccc ccgcaacttt tcaaagatgt atgaacaacc ttttggaaga      2340
     tttaatctac aaagattgtt tagtttattt agacgatata ataatttttt ccacttcatt      2400
     ggaagaacac atcttatctc taaagaaagt ttttggaaaa cttagggatg caaacttaaa      2460
     actacaattg gataaatgcg agttcatgaa aagagaaaca gaattcctag gtcatgttgt      2520
     aactactaat ggtatcaaac ccaatccaaa taaaaccaat gctatcacaa atttcccact      2580
     accaaagact ccaaaacaaa taaatcattt ttgggattat gtggattcta tcgcaagttc      2640
     attccaaact tcgctaacat agttaaaccc atgaccatta aattgaaaaa aggagcaaca      2700
     atagacacag aagataaaga ttacatagca gcatttgaaa ggttaaaagt acttattaca      2760
     tcagatccga ttttaatcta ccctgatttt agtaaaactt tttccttaac tactgacgct      2820
     agtaatattg ccatcggtgc agtcttgtct caaaatcata aacccgtctg ttatgccagt      2880
     aggacattga atgagcatga aataaactat gccactatag agaaagaact tctagctata      2940
     gtttgggcga caaaatattt cagatcatac ttatttggga gatcttttga aatacttagt      3000
     gatcataaac cccttgtctg gcttaataat attaaagaac caaatatgaa acttcaaaga      3060
     tggaaaatta aattaaacga atttgattat aagattaagt atcttcccgg aaaagaaaat      3120
     tatgtagcag atgcattatc gcgtaccaaa atagaagaac taatgcttgg cgaagttgcc      3180
     aatagtgtag atgcaactat acatagcgct tctgaagata atcttaatta tatatccatc      3240
     accgaacgac cattcaatta tttctctaga caaatagaat tagagaaagg agataacgat      3300
     gaaactgagg taaagcatta ttttcacaaa ttgaaaatca aaataactta caaagaaatg      3360
     acagatgact ttgctaaaaa catcattaaa gaatatgtat gcactaagaa aagcgcaatt      3420
     tatttccata atgatgatga tttcttaaca ttccaaaggg catacgtaca aataataagt      3480
     cccaacaatt taacgaaact ggtaaaacgc acgcttatat taaaagatat tctgacttat      3540
     gccgaattca aaaatatgat attaaaaatg cataaagaac ttctacaccc aggaatcgaa      3600
     aaaactatca actggtttaa agaagaacat tactatccag atagccaaaa gttaatacaa      3660
     aatataatca atgaatgtga aatctgcaac attgcaaaaa cagaacacag aagtacaaaa      3720
     ctatcatttg aaataactcc agaaatactt aacgcaagag aamgatatgt aattgatttc      3780
     tatatggtcg gtaaccagca atttttatct tgtatcgaca tttattcgaa attcgctact      3840
     ttaattgaag tgaaaagtag agattggcta gaagcaaaaa gagccataat gaaggtattt      3900
     aacgatatgg gaaagccaca agaaatcaaa gcagacaaag actcagcttt tatgtgtata      3960
     gccttgcaaa actggttaaa atctgaagga gtagatatat cagtaacaac cagcaaaaac      4020
     ggtgtatctg acgtagaaag gtttcataag acagtaaatg aaaaattgag aattattagt      4080
     aacgaaaaca atatagagga ccggtgtaca aaattcgaag taatcttata cgtgtacaat      4140
     cataaaacaa aacacaacac gactaataga actcccgcag atattttcct atacgcagga      4200
     acaccagata ttaacactca acaaaataaa atcaataaaa tagacaggct aaatgaaaat      4260
     agacacgatt ttgaagttaa tacgaaatat agacaagcac cattagttaa aaccaagatt      4320
     accaatccct tcaagaaaac aggtttaata agacaggttg acaacaaaca cttcgaagaa      4380
     acaaatagag gcaggaaaat cacacattat aagtcaaaat tcaaaaaaca aaagaagatt      4440
     aataagagca aatatgataa ttccagacaa accgaggaag atgaaacata accaagtcat      4500
     ccctatatta tccctgatat taatctcgct tataagtaca accaaggcac aaagtatcga      4560
     aataagtcca ataaacgcaa aaaacggata tctgatattc aaaaccggat caatggaaat      4620
     cccaacgaat tttgaatacc accatttaag tataaattta acaaagaccg aaatgacatt      4680
     cgacaaccta ctggacgaag ccaaagaatt ccaacacatt gtccaaatcc aatatttagt      4740
     tgaaaaatta aaaagagaaa tgaatgggtt aagaatagtc agaagaagca aacgcgggct      4800
     tttaaacgtg gtaggttcag tctataaata tttgtttggc acactagatg aagacgataa      4860
     ggaagaactc gaaacgaaaa ttaataatct agcagataat tccatccaaa atcatgattt      4920
     aaatatgatt attgacgttg ttaataacgg acttgaccta ataaacaaac ttgaagaatc      4980
     taaaaataag caagaacaag ctgcagttct gatttttaat ctccagcaat tcacagaata      5040
     catagaggac atagaattag gaatgcaact aactaggtta ggtatattta acccaaaatt      5100
     attaaaacac gattatttaa aacaggttaa ttcagaaaag ttgttaaaag taaaaacatc      5160
     aacttggctc aaaacagaca cgaacgaaat cctgataatt tcccaaattc ctaatgaaat      5220
     aacgaaaact cctgtatatg aaataattcc atatccagat gaatttgata atatcttaac      5280
     agaaaacaca tttgataaat attacattta tgaagataaa gtattcaatg aaaacacagg      5340
     tcaaattatt ttcgacaaat gcataattgg aatcctaaaa caagaaccga caaaatgcaa      5400
     atatgtaaaa acccataaaa atttccaaat aaattacatc gaaccaaata ttttgttaac      5460
     atggaatata caaaaatcaa ctataaatca aaattgtata agcacagaag tttcgatcgt      5520
     tggtaataat attgttaaaa taaaaaattg tactatacag ttagatgagt tcataatatc      5580
     caacaatata gcagattata cacaatcaat ttatgttaac aacaatatca caaaaatcga      5640
     accattgtca tatatccaaa ctaaagaaat agtcgaatca catataaaat attacaatac      5700
     atttcagata atatgtttaa ccacatttgt aataactata ataagtttga cattatattt      5760
     aatttacaaa tttaaaaata ttcctaagaa acttattgta aaatattcta aacgtgaaga      5820
     acaaccaatc atagaaaata agaatgtaaa aactactgag gaaaatattg tagcagaaaa      5880
     tattatgtta taccctacgt tatcgccctg aggacaggcc aaattcaaag gttgggggag      5940
     tgaca                                                                  5945
//
ID   Gypsy-16_DEl-LTR repbase;    DNA;    INV; 624 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DEl_;
KW   Gypsy-16_DEl-I; Gypsy-16_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-624
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 541-541 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 624 BP; 234 A; 148 C; 79 G; 161 T; 2 other;
     tgcccatatt cctatgagac tctgcatata tttaagcaac acatacacag tcccataaca        60
     ctctgaatat acccattact ttatgtatcc acaatatacc ctatactacc ctagaattat       120
     acacccttgt aacaagagcc caaaatcgaa ggccaacgga aaatccccaa atgtcatccc       180
     aggttatcac ccaaaactgt agactaaaca actcacccca attgtcacgt tcacacgttc       240
     aaagataatc aaagttcggc tcgcagacac ataaactcct atttcaaaaa cacataaact       300
     cctatttcaa tccaaagaca tttcaaagtc ktaaaatcta agagcgcact tgtatccaag       360
     agtcaagaca cttgaatcca agagtaatta aagtttcact caaaagaaac tgaaagtttc       420
     tcagaacaat ttcacaactc actcaaatcc cgaaaagctc gagaccgagg cttgatcgtc       480
     aacagaatca gatcagcaag ttaagttcag tttgagacct caatgtaata ggtcggtgtt       540
     cttcactaat aagttwaaaa ctctgtaaac cacaagttga ataaaataaa attatatttt       600
     tttatttaat cggagttgca aaca                                              624
//
ID   Gypsy-16_DMel-I repbase;    DNA;    INV; 5728 BP.
XX
AC   .
XX
DT   14-AUG-2018 (Rel. 24.06, Created)
DT   14-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5728
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1048-1048 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           715..5100
FT                 /product="Gypsy-16_DMel-I_1p"
FT                 /translation="MAVAAPTQIELSDSNMIQVERQIHAIEVFNGDPNTLY
FT                 TFISRIDFILALYQTTDERQKLIIFGHIERNISGDVIRTLGVTNLSSWSEL
FT                 RTQLILNYKPQTPNHQLLEEFRNTQYRGNIRHFLEEAERKRQILMSKLELE
FT                 NNTNETILYTRLIQTSIENLIQKLPSHIYLRIINCNIPNLRSLINILQEKG
FT                 LYEAPTSSKDNVKPTSIPSKVTNTPQNRQMNNQTRPLAPFQPFYNHAYQPY
FT                 HQAYSHVPRFSTNPIPQYQNRPIYPQPNIPLTQAPRPNTAFNRQSIFDQNR
FT                 FGPSHTHMPTTYPQTGNVQTNNPIKRQRPSDSGQSKMSIEELRYQEVSSNQ
FT                 PEYPYNYNYYYPYCPEYFQPYPYQSNYTPELIPCPLEQNYDNSETTEEERP
FT                 TTNDNEPDNPEQAENFSASSPGSSQYITIKHNNTELKCLIDTGSTINMLTR
FT                 NIFQTPTQETNYLIHTSNGPLIINELTNIPPNNYFPIAQEFLIHPFSDHYD
FT                 MLIGRKLLSEAKAIIDYKKKTATLFNKIYKIKDGNNITEQNHIQMDPSFPQ
FT                 DPTYLETSTLQENLFRLEHLNVEEKLKLTNLLTKYQDIQFREGDTLTFTNQ
FT                 EKHIINTTHNIPVYSKVYSFQQTYEKEVEKQIQEMLEQGIIRESNSPYCSP
FT                 IWVVPKKLDASGQQKLRIVIDYRKLNEITINDRYPIPNIDEILGKLGRSNY
FT                 FTTIDLAKGFHQIEMDSESIAKTAFSTKYGHYEYTRMPFGLKNAPATFQRC
FT                 MNNLLRPLLNKCCLVYLDDIIVFSTSLEEHLQALQAVFEKLSQANLKLQLD
FT                 KCEFLKQETTFLGHVITKDGIKPNPDKIKAIVKYPLPRKTKEIKAFLGLTG
FT                 YYRKFIPNFSDIAKPLTKCLKKGATIDINSLEYLEAFQKLKLLISEDPILK
FT                 IPNFERKFTLTTDASNVALGAVLSQDGHPISYISRTLNEHEINYSAIEKEL
FT                 LAIVWATKTFRHYLLGRHFEVASDHQPLCWLHKLKEPNSKLTRWKIRLSEY
FT                 DFDIKYIKGKENYVADALSRVKIEETFFGESTQHSAEEDSSNLIGLSEKAI
FT                 NQHKRQIIFTKGPNKTEIETYFKKQIIHLSYEEMTPEIAKRYLLDYFCSKN
FT                 SALYIESDADFEVIQKAYKETMNPRYTKIFRSLILLKNIPTYANFKELILK
FT                 THEKLLHPGIQKTVKLFGETYYFPNSQLLIQNIINECQVCNLAKTEHRNTK
FT                 MPMKVTPKPEHCRDKFVIDIYSSEGNHYLSCIDIYSKFATLEQIKTKDWIE
FT                 CKNALMRIFNQLGKPEILKADRDGAFSSLALKRWLETENVELQLNTTKTGV
FT                 ADIERLHKTINEKIRIINNSDDNEAKLSKIETILYIYNHKTKHDTTGQTPA
FT                 HIFIYAGQPILDTQHNKEIKINEINKDRTEYNVDTRYRKGPLQKGKLENPF
FT                 KLTKNVEQTDEDHYKITNRNRETHYYKTQFKKQKKNNKLPISQAPGSS"
XX
SQ   Sequence 5728 BP; 2425 A; 1215 C; 774 G; 1312 T; 2 other;
     ggcgcagtcg gtaggatgat actagttgat gcgatattaa acatattcaa ttctctgtgt        60
     atcacaaact aataattaat tacaactaag tgaaccataa taaaacagct aaactaagtg       120
     aaaattaaat aaaagtaact acaactaagt gaactacaat aacaacagtt aacctaagcg       180
     aaaaataaat aaacttaacc agaaataaac gaacaataat aataacagtg taaccaagtg       240
     aaaactaaat aaacttaatt acaactaatt gaaccataat awaacagcta aattaagtga       300
     aaactaaata aaagtaacta caactaagtg aactacaata acaacagtta acctaagcga       360
     aaaataaata aacttagcca gaaataaacg aacaataata ataacagtgt aactaagtga       420
     aaactaaata aacttaatta caactaagtg aaccataata ataacagcta aattaagtaa       480
     agactaaata aactcaacta caactaaaat gaattaaatg caactaagtg aaacattata       540
     ataataataa gtgagcgaac aacaagaaac ccatcaaaca cacaaactta aaacgaagac       600
     acaaacaaat agtgagaact caaaccctat ccaaatcgcg aaccaaaata aaaccacaaa       660
     ccttatctaa gctacgaaca aacaataatc aaaattcaag accaacaaac cacaatggca       720
     gtagcagcgc caacacaaat agaactgtct gactcgaata tgattcaagt cgaaagacaa       780
     atacacgcaa tcgaggtttt caacggagat ccgaacacct tgtacacttt catcagtcgc       840
     atcgacttca tcttggctct gtatcagacc acagatgaaa gacaaaaatt aataatcttt       900
     ggacacatcg aacggaacat cagcggcgat gttatccgca ccctcggagt aaccaacctc       960
     agcagctgga gcgaactcag gacgcagctt atacttaact acaagcccca aacaccgaac      1020
     caccaacttc tggaagaatt caggaacaca caatatcgag gcaacattcg tcatttcctt      1080
     gaagaagccg aaagaaaacg acagatactt atgagtaaat tagaactaga aaataatact      1140
     aacgaaacca ttctctatac tagattaata caaaccagca tcgaaaatct aattcaaaaa      1200
     cttccaagcc acatttatct cagaataata aactgtaata ttccaaacct gagatcatta      1260
     ataaacatat tacaagaaaa aggtctttac gaggcaccaa cctcaagtaa agataatgta      1320
     aagccaactt caattccaag caaagtaaca aacactcccc agaataggca aatgaacaat      1380
     caaaccagac cccttgcacc cttccaacca ttctataacc acgcctatca accctatcac      1440
     caagcatatt ctcatgtacc caggtttagc acaaatccga taccccaata tcaaaataga      1500
     cctatctacc cacaacctaa catacccctg acacaagcac ccagaccaaa cacagctttt      1560
     aaccgacaaa gtatttttga ccaaaatcgc tttggaccta gccacactca catgcctaca      1620
     acatatccac aaaccggaaa cgtacagact aataacccaa taaaaagaca gagaccatca      1680
     gacagcggac agtcgaaaat gagcatagaa gagctaagat accaagaagt atcgtctaac      1740
     caacccgaat atccttataa ctataattac tattatccct actgtccaga atattttcag      1800
     ccttatccct atcaatcgaa ctatacccca gaattaattc catgtcccct tgaacagaac      1860
     tatgacaatt cagaaacgac agaagaggag agaccaacaa caaatgacaa cgaaccagac      1920
     aaccccgaac aagcagaaaa tttttcggct agtagccccg gatcaagcca atatataacg      1980
     atcaaacata ataataccga attgaaatgt ctaattgata cwggatctac gataaatatg      2040
     ctcacgcgaa atatttttca aacaccaaca caagaaacca attacctaat ccacaccagt      2100
     aatggcccgt taataattaa tgaacttacg aacataccac ctaacaacta cttccctatt      2160
     gcccaagagt tcttgatcca cccgttctca gatcattatg acatgctgat tggacgcaaa      2220
     ttgttgtccg aagccaaagc aataatcgac tataaaaaga aaactgccac tctatttaac      2280
     aaaatataca agataaaaga cggtaacaac attaccgaac agaaccatat tcaaatggac      2340
     ccttcatttc cacaagaccc cacttactta gaaacctcca cacttcagga gaacttgttc      2400
     cgattagaac accttaacgt agaagaaaaa ctgaaactaa ctaatctact gacaaaatac      2460
     caagacatcc aatttcgtga aggtgacacg ctcacgttca caaaccaaga aaaacatatt      2520
     attaacacca cacacaatat ccccgtctac tctaaagttt atagtttcca acagacatat      2580
     gaaaaggaag tagaaaaaca gatccaggag atgttagaac agggcattat ccgagaaagt      2640
     aattcaccat actgtagccc catttgggta gtaccgaaaa aactagatgc ttctggacag      2700
     cagaagcttc gtatcgtaat agattatagg aaattgaacg aaataacaat aaacgacaga      2760
     taccccatac cgaacataga tgaaatatta gggaaactag ggaggtcaaa ttatttcaca      2820
     acaatagatc ttgcaaaggg ctttcatcaa atagaaatgg actcagagtc aatagccaaa      2880
     actgccttct ctacaaaata tggacactac gagtacacac gaatgccatt tggtcttaaa      2940
     aatgcccccg ctacatttca aagatgcatg aacaatttac tccgtccact tttaaataaa      3000
     tgttgtctag tatacctaga cgacatcata gttttctcca catctttaga agaacatctt      3060
     caagccttac aagctgtttt cgaaaaatta tcacaggcaa acttaaaatt acaactagat      3120
     aaatgcgagt tcttaaaaca agagacaacc ttcttaggac atgttattac taaagacggg      3180
     attaaaccaa acccggataa aatcaaagct atagttaaat atccgctacc aagaaaaact      3240
     aaagaaatta aagccttttt aggacttaca ggatattata ggaaatttat acctaatttt      3300
     tcagacattg ccaaacccct gaccaagtgc ctaaagaaag gagcaacaat agatataaac      3360
     agtttagaat acttagaagc attccaaaag ttaaaattat taatatctga agatccgatc      3420
     ctaaaaatac cgaatttcga gaggaaattt acattaacaa cagatgccag caatgtagct      3480
     ttaggagctg ttttatcaca agacggacac cctattagtt acatcagcag aacactaaat      3540
     gaacatgaaa tcaattatag cgccatagaa aaagaattat tagcaatagt ttgggccacc      3600
     aaaaccttca gacactatct gttaggacga catttcgaag tagcttctga ccatcaaccc      3660
     ttgtgctggc tacacaaatt aaaagaaccg aattcaaaat taacaagatg gaaaattaga      3720
     ctttcggaat atgacttcga cataaaatat attaaaggaa aggaaaatta cgtagcagat      3780
     gcactttcta gagtaaagat agaagaaaca ttttttggcg aatctacaca acatagtgct      3840
     gaagaagaca gtagcaattt gatcggacta tcagagaaag ctatcaatca acataaaaga      3900
     caaatcatct ttaccaaagg tcccaataaa acagaaatag aaacttactt caaaaaacaa      3960
     attatacacc tttcatatga agaaatgacc cctgaaatag ccaaacgata tctactcgac      4020
     tacttctgtt caaaaaacag cgctctgtac atcgaaagcg atgcagattt cgaagtaatt      4080
     caaaaagcat ataaagaaac aatgaatcca agatatacaa agattttccg aagccttatc      4140
     ttactaaaaa acattcccac atacgcaaat ttcaaagaac taattctaaa aacacatgaa      4200
     aaacttctac accccggaat acagaaaact gttaaacttt tcggcgagac atactacttc      4260
     ccaaatagcc aactccttat ccaaaatata attaacgaat gccaagtttg taacttagca      4320
     aaaactgaac accgaaatac aaaaatgcca atgaaagtca cccctaaacc cgaacattgc      4380
     cgcgataaat ttgtaataga tatctattcc tctgaaggga atcactattt gagttgtatt      4440
     gacatttatt caaaattcgc cacccttgag cagattaaaa caaaagattg gatagagtgc      4500
     aaaaatgctc taatgcgcat attcaatcag ttggggaaac ccgaaattct aaaggcagat      4560
     agagatggcg cattttctag tttagccctc aaacgttggc tcgaaactga aaatgtagaa      4620
     ttacaactca ataccacaaa aacaggtgtt gcagatatag aaaggctcca taaaacaatt      4680
     aacgaaaaaa tccgtatcat aaacaattcc gatgacaatg aagctaaact cagtaaaata      4740
     gaaacgattc tttacattta caaccacaag accaaacatg acactactgg acaaactcct      4800
     gcccacatat ttatttatgc tggacaacca attctagata cccagcacaa caaggaaata      4860
     aaaattaacg aaataaacaa agaccgaaca gaatataacg tcgacactag atatagaaaa      4920
     ggaccgttgc aaaaagggaa attagaaaac ccttttaaat taacaaagaa cgtcgaacaa      4980
     actgacgaag accattataa aatcaccaat aggaatagag agacacatta ctacaagacc      5040
     caatttaaaa aacagaaaaa aaataataaa cttcccattt cacaggcccc tggttcatca      5100
     taatacccct cctcacgttt atcataggag acatccctat ttacctaccc taaagatact      5160
     tattttgaag aacatggcaa agtctataac caaaattgta aagaaataaa caacgaatgt      5220
     attaagaaaa ttacaaaaag aactaaacca atatgctatt tcatccctac aacagttaac      5280
     cagataatta aatatgtaga gccaaacaat atacttactt ggaatataaa aaatactatt      5340
     atagaacaag attgccaaga aataaataaa aatgtaacaa ttaacggcaa caaaataata      5400
     acaataaaac aatgtaaaat caaaatagga aaaataacgt taaacgaaaa ccagctgaat      5460
     cccgaaataa atctaacacc attgtacaca cccattgaac taataaaaat aaaaccaata      5520
     gaacataagg acattgtaaa actaatatca aataataata ttacagtctc tattatcgta      5580
     tcactcacat tttagtatag tttgtatcta cttaaaacta aaaataacaa aaacaattat      5640
     ggaaacacaa gatataaacc caactgcatt accaagatta tatgcgtcaa gcccaataca      5700
     agcataagct tccttttaag gggaggga                                         5728
//
ID   Gypsy-16_DMel-LTR repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   14-AUG-2018 (Rel. 24.06, Created)
DT   14-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-363
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1027-1027 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 363 BP; 105 A; 79 C; 53 G; 126 T; 0 other;
     agtagcataa tatgcttcac atattacgct tacacaagca ttgtacatac aatcttgcac        60
     atgcataaac acatgaaacc aatttacatt tttgcttaca cttaagcgca tgatttgttg       120
     tgcatccata ccgttctttt tccgttcctt tttgtacaca tatactgatt agacattccc       180
     gtttctcgcg actcacttcg agccgatcaa aaactctgta cagtcagtct taagctgaca       240
     gttttaaaat aaagacgctc actgaaatta ttcgtgtttc aatttataat tggcttcagc       300
     gttgatcttt gtcttcgtca tagacggatc atttattcga ctcgaaatag taactacgta       360
     agt                                                                     363
//
ID   Gypsy-16_DMo-I repbase;    DNA;    INV; 3491 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-3491
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 3491 BP; 1235 A; 582 C; 742 G; 932 T; 0 other;
     cagaagtggg attcgccgtg cctacaaata atattaacga tacatacgtg gcagctttac        60
     aagtgcaaaa tcaaaatctt ttagaaataa taaaaaatat gcagacacca agatcatcgg       120
     ttgttaatga aaaggcaaca cacgtaattc tgccaaaatt taattctgac ggagttggtt       180
     cagatgcctc agcttggtgt acaacagcgg atcttatttt tgctgataga atgcccgaag       240
     gtagcgggct gatgataact ttaagcgaga cgctagaggg aattgcacca caatggttgt       300
     cccagatatg ctatggcaac gaaacgtctg cactggcagt gcagtgcaga ctgccataat       360
     ggcagtcgaa ttgtcacctt ataaatgaca aaatttaaat ccaaggacct ggaagaaatc       420
     gccgtatcac tagccctggc tcacgtggca caagttgata ataaattgat gcgctgggtt       480
     ttcactagca atataaaaac ccgaaatgaa atgcaacaac aactacacaa atttgggaaa       540
     cgccacctga acgacgacgc attcacagca ggctccgaac gcaagaagtt taagcacccc       600
     tttcaagtga aatgcaacta ctgtggaaag cctggacata agtatgctga atgtagtgct       660
     cggcagatga cgccaatcca agggaaatgt cacatcgagg gtacaacaca agggccaaat       720
     gacgttggac gtgaaatttt tagccaaagt tttgacgtaa ctatggacgc tgacaaattc       780
     cagatttatg aaaccaaaag agtagattcg cttataataa ccaattatga agacgttatt       840
     gcattgaata gtgaattaga tgattcagat aaactagcct tgagaaatat tttaaaatgc       900
     tattctgttc ggtttattga tggaatacca aagactagaa tcaccacagg gcaggctaat       960
     agatcagcaa aagacagtac agcggcggcc atatagactt agtgaggacg aaaaaagcag      1020
     agtccgttgt aaaattgaag aattacttaa agctaagatt attcgtccaa gttgttcacc      1080
     ctttgctagc cccatgatgt tagtcaaata gaagaatggt actgatcgac tttgcgtgga      1140
     ctatcgtatg ttaaacgtgg tgctaaatat ttttcatgct tagatatggc aagcgggttt      1200
     taccaaattc cagtgcacga agactcgagt gatcgaacgg cattcgtaac gcttggaggt      1260
     caatacgagt tcttgacaat gccatttggt gtgaaaaatg cagcatctgt gtttcagcgt      1320
     gcaataataa aggcattagg gactttagct tatagttatg caattgtgta tatcgatgat      1380
     gttctcataa cagctgaaag caaagaagat gcgttagtta gactacagac agtactagac      1440
     gttttaatgt caccaaatgt tcatttctca caactagaat agagtattta ggatttgaag      1500
     tgagcaatgg agaaatcaag ccaaatacac gaaaaattga agctttgact gaattaccac      1560
     ctgcacaaaa tgtatcacag ctaagacttc tcacagacac tttaaccact ttatcatctt      1620
     acatctaaga aaaatactaa ttttggtctg gttatcggat acgtgtaaga ataataaatg      1680
     tgctgacgca gacgccagta ttcatcatat tcgatccaaa atacccgatc gagtagcata      1740
     cagacgcaag tagtgttggc tatggagcga tactgttgca taaaattgac aacaaacctt      1800
     acgtagtaga gtattacagt aggtgtacgt ctgctgccga atccaggtac cattcatacg      1860
     aattagagac gttagtagtg gtaaatgcac ttaaacactt tcgacattat ttgcagggac      1920
     tgattgcaat tccttaaagg ccagccgtac gaaaacggat ttgacaccga gcgttcatag      1980
     atggtgggca tttttgcagg catttgattt cgaaatagag tatagaaaag gcgagcgaat      2040
     ggcgcatgtt gactttcttt ctcggaattc agtgcacaaa gaaaaaaaaa aaagtataaa      2100
     taaaatacct gaattgagaa ttaatttagc tcaagtttca gacaattggt tgatttcaga      2160
     acaacagcga gattctgaaa tacaaaatat aatacaaaag ctaaattgta atgagtcact      2220
     aggaaatctg gacagtatca aagccacctg tgggaaaagt gcaggcagag ctgcatcgta      2280
     ttcctaaaat agatataccg tggcatacag tgcatattga cataacaggc aaactgagtg      2340
     gtaaaaatga cttgaaaaaa tacgttattg ttctccttta caaagtttgt ttacttttat      2400
     catgcattaa atgtggattc agaaagttgt attaaggctg tcaaatcagc cttatcctta      2460
     tttgggctac ctactcgaat tatagctgat caaggacgca gtttcgcaag taaaagtttt      2520
     cgcgaatcct gctcctaaca aggaataaat ttgcatttaa ttgcaactgg taccagtact      2580
     ttaaacggcc aggtagagcg cgtcatgggt actctgaaaa gtatgttgac tgcagtcgaa      2640
     accagtcaga gatcatggca agatgcgctg gccgaagtgc agctagctat gaactgtacg      2700
     attaatcgtg tgactaagta tagtccacta gaattattaa ttggaaaaga agcccgtcct      2760
     tttggtatgt tgccaataaa cggggaaggt gatgaggaag tagataaaga aaagttaaga      2820
     taggaggctg agaggaatat ggaatttcaa gcaagatacg acaaaaatag gtttgacaaa      2880
     aataaagcta aaattgtaaa tttcaacgtc ggtgatcacg ttttgttgaa aaacaaagag      2940
     gtcatcaaac taaacttgat ccaaaattta aaggcccctt caaagtagtt gaggtgttgc      3000
     cggaagatag atatttacta agatctttaa catggaatcg aaagtacaaa tattctcttg      3060
     aatatctaag ggcaatacca aataaccaaa ttgatgagtt aagtaaagaa aaagacagtt      3120
     caattgaagt tgagtctaag agtcaacaga gaagttgaag accgcaccat aacagaagga      3180
     cttgttatgg cgggggtcgt atatgtaaaa ggatcaacac aaaagataaa tttatagtta      3240
     aattcttaaa gaaaaaaaag ggagtttaaa tgtggaaagg taccacataa atgttaagat      3300
     aaataaattt aaattgttaa aaaaaaaaaa aaaaaatgaa gaaaatttgg aactgattga      3360
     attatttgtt tgttataata aaaataatag ctaatgttta tatacgagta tatctgtttg      3420
     tagaatgtga tggatttctg ttgtagagtt aagacaacac acgaggacgt gttatttgtc      3480
     aggaaggccg t                                                           3491
//
ID   Gypsy-16_DMo-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-331
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 331 BP; 85 A; 62 C; 91 G; 93 T; 0 other;
     tgtcgcagca tgaacataca attgtagctt ggccactgtg cgtgtgcttg catgtcgctg        60
     ctgtgcaata gatttggtct attatgaaat tatttagaaa ttccaagaat tatgaatatc       120
     ggtggcgccc tttgagcgag gcgacggcgg tgtcgcgctg tcgctgagtg tagtccaact       180
     tgcgtttgaa aagcaacaga agcaggtact gatgcgagaa taagagttca gttgagttca       240
     gacagtgtta cgcgcaagtt ggaattcgct acgttcttag agtgtgtcat catgacagat       300
     cggtcgaacg aaatgaatgt gtctccgaca t                                      331
//
ID   Gypsy-16_DRh-I repbase;    DNA;    INV; 4074 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DRh_;
KW   Gypsy-16_DRh-LTR; Gypsy-16_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4074
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1581-1581 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1614-2156] - Reverse transcriptase
CC   Positions [3174-3650] - Integrase core
CC   'TACA' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1512..4073
FT                 /product="Gypsy-16_DRh-I_1p"
FT                 /translation="MKITPDEQMKSFCHQKSRYSPPECDAIKDQIDKWLSE
FT                 GVIRKSSSNFASRVVLAKKKNGSYRICVDFRQLNSMVLKDCFPVPLIDDVM
FT                 EKLQAAKVFIVMDLENSFLHVPIEESSRKFTAFITKEGLFEFCRAPYGFCN
FT                 SPAVFNRFVNNIFQDLITGDVMQMYVDDIIIYAQTYDECITKLKAVLHEAA
FT                 KYDLKIKWEKCHFLQSKIHFLGHTVQNGQIWPGQEKTQAVKSFAYPKNIKG
FT                 VQSFLGLTGFFRKFIKGYAHIARPLTELLKKGAVFKFETREKTAMNQLKDI
FT                 LSTEPVLRLYCREAATELHTDASKDGFGAVLIQRIEEELHPVAYWSKKTSE
FT                 ADEKRHSYILEVKAAYLAVNKFRHYLLGMPFKLVTDCAAFTMTVKKKDVPR
FT                 EVAQWILHLQDFNFQVEHRSADRMKHVDGLSRYPQDVYTITSEISARIKVA
FT                 QQKDEFISTVLEILKSRPYKDFKLKGGVLFKHVDGNDLLVVPKTLEHEIIS
FT                 DAHNMGHFSMQKTLHSLRQQFWISHMENKVAQVIKSCIKCIICNKKLGKQE
FT                 GQLYCIEKGDCPLHTLHIDHLGPMDATSKQYKYIFAVVDAFSKFVWLFTTK
FT                 TTNSDEVLKSLKDWSAVFGYPSRIVSDRGVAFTSNVFMDFARENGIDHVWT
FT                 TTGVPRGNGQIERVNRSILSIISKLSAEDTSKWYKFVPQVQRAINSHVNCS
FT                 TKKTPFLLMFGVKMRSKTNDNLIALLEQELLDEFDTKRTKEREEAKIEIQK
FT                 AQANYKRNYDKKRKKESIYKEGDLVAIKRAQFVAGKKLASTYLGPYVVSNV
FT                 KRNGRYDVKKAAPIEGPNSTSTSSDNMKMWKYVNWNEDNLSSGTDSSGQDD
FT                 R"
XX
SQ   Sequence 4074 BP; 1339 A; 819 C; 939 G; 973 T; 4 other;
     tttgggggct caaccaaact taaaaattgc gaaaaattgt ggtgttgcca aatttcaacg        60
     atttcatcat ccagtgagta cgagagcatg agtgaagaag aggaaaaaaa gagacaacaa       120
     cctggtgtac agacacgaac acaagccaga aaccagcagc tagctatcct ggagagagga       180
     ggcatagaga acgaaacgga atacataaga agcggtgatc aaggagaacg taattcaata       240
     cacaactgta ctctggaaga cgccaacgca atggccgaga tgaacaacag aagcttgcaa       300
     caaattatac agttgctacc cttaaaattg aagctgatga aataaaccaa agatcgcaaa       360
     tagttccaag cttcgacgga gaaacaatac cagtggagca gtggttcaca aactttgaac       420
     aaaatgcagc tgcatatgaa ttgagtgaga agcagaaata tgtgcaagca cgcggaaaaa       480
     tgacgaaaat ggctaaactt ttcctcgaat cagttttggt cagcacttat gatcagttga       540
     aaagtgttct aacggcggaa tttaaacgcg tccttcggag cgccgatatt catgcaaagt       600
     tggccgagag aaagaaaaaa gagacgagaa ctttcatgaa tatgtactca acatgaagaa       660
     gatcgcagta atgggacaag tagatgagca atctgtgatc ggatatatag tggacggatt       720
     ggacatcaaa aaggaatata agttcaatat gtacgattgt cgatcgtatc aagaattgaa       780
     agaaaaattt gacgtgtatg aacgcaagtg tggaagtgag agagaggaac gacactacaa       840
     taaaggtcaa aaatcgtgta cggtgagaaa aaagtttctc gttgctttaa ttgcggatca       900
     accgaamaca tgagaaaaga ttgcaacaca gagacaaaat gctttaaatg tgatggtgtc       960
     ggacatattt ctacaaactg tccacaggcc gtaaggaaag tgaacgtcat caagaataca      1020
     cagcgctgca aagaaaaacg ctcaacggtc taagagtttc cggactcgtt gatactggtt      1080
     ccgatgcgtc actcgtttgt ctgtcggtgt tcaatagact gaaaaatgtg aatctccaaa      1140
     actccaactc tgtgcttcga ggtcttggaa atcgcagagt agaacctctg ggcgcattta      1200
     tggcgactgt atacgtcgat ggaaacgaag cagagcagct gttcctggtt gtacctgatg      1260
     gaaacatgga aaackatgtt ttacttgggt tcgatttcgc gtcacaattt agtgtgtctc      1320
     ttaacgaaga aggattcacg ttccagaagg cgtcagcgcg gccatacacc gctgaaaaag      1380
     acgagctaag tatctacaat atagttgacg caaaacctga tattgatgtt cccctacagt      1440
     ttaaaccgct tgtcgagtca atgattgagg aatacaaacc gttaactccg mtctgcatca      1500
     gtccagttca gatgaagata actccggatg aacagatgaa gtcgttttgc catcagaaaa      1560
     gccgttactc tcctccagaa tgcgacgcga tcaaagatca gattgacaag tggctatcag      1620
     agggagtcat ccgaaagtca tcctccaact ttgccagtag ggttgtgttg gcaaagaaga      1680
     aaaatggttc gtacagaatc tgcgtggact tccgccagtt aaacagcatg gtacttaaag      1740
     actgtttccc ggtcccactg atcgacgacg tcatggaaaa actacaagcg gccaaagtat      1800
     tcattgtaat ggacttggag aacagcttcc ttcatgtgcc tatcgaggaa tccagtcgca      1860
     agttcaccgc ttttatcaca aaagagggat tatttgaatt ttgcagagcg ccttatggtt      1920
     tctgcaattc tccggccgta ttcaaccgct tcgttaacaa cattttccaa gatttgatca      1980
     ctggtgatgt catgcagatg tatgtcgacg acatcattat atatgcgcaa acctacgacg      2040
     aatgcattac caagctgaag gcagtgctac acgaagctgc caagtacgat ttgaaaatca      2100
     agtgggagaa gtgtcacttt cttcagagca agatacattt cttgggacac acagttcaga      2160
     acggtcaaat ttggcccggc caagagaaga cacaggcagt taagagtttc gcttacccaa      2220
     agaacattaa gggcgttcaa tcgttcttgg gactcacagg gttcttcaga aaatttatta      2280
     aaggatatgc ccatatcgct cgacctttga cggagctgtt aaagaaaggc gctgtgttca      2340
     agtttgagac tcgtgaaaaa acagcaatga atcagctcaa agacatttta tctacggagc      2400
     cagtcttacg tttgtactgc agagaggcag ctacagaact tcacacagat gcttcaaaag      2460
     atggctttgg ggctgtgctc atacagcgta ttgaggagga acttcatcca gtcgcctatt      2520
     ggagcaaaaa gacttcagaa gcagatgaga aacgccacag ctacatactg gaggtaaaag      2580
     ccgcatatct cgctgttaat aaatttcgtc actacctcct gggaatgcca tttaaactgg      2640
     tcaccgattg tgctgcattt acgatgacag tcaagaaaaa agatgtacca cgcgaagtgg      2700
     cgcaatggat actgcatcta caggacttta attttcaagt cgaacatcgc tcagcagata      2760
     ggatgaaaca cgttgacgga ctcagccgct atcctcagga tgtttacacg atcacttcgg      2820
     aaatttccgc tcgcatcaag gtcgcccagc agaaggatga attcatcagc acggttttgg      2880
     aaattctaaa atctcgtccc tataaagact tcaaacttaa gggaggtgtt ttgtttaagc      2940
     acgttgacgg gaacgacctg ttggtagtgc caaaaacgtt ggaacatgaa attatttccg      3000
     atgcgcataa tatgggacac ttctcaatgc aaaaaacgtt gcactcgctg cgmcaacaat      3060
     tttggatctc acatatggag aacaaggtcg ctcaagttat aaaatcttgc attaaatgca      3120
     ttatatgcaa caaaaaattg ggaaagcagg aaggtcagct ttattgcata gaaaaagggg      3180
     actgtccact acacacactg cacatagatc acttgggacc tatggatgca acgagcaagc      3240
     agtacaaata tattttcgca gtagttgatg cttttagcaa atttgtctgg ctgtttacaa      3300
     cgaagactac aaacagcgat gaagttctca aaagccttaa ggattggtca gctgtttttg      3360
     gatacccatc ccgcatcgtc agcgacagag gagtagcctt cacatccaat gttttcatgg      3420
     acttcgcaag ggaaaatgga attgatcatg tctggacaac tactggtgta cctcgaggca      3480
     acggacaaat agaacgggtg aaccgatcca ttctttcaat catatccaag ttgtcggctg      3540
     aagatacctc caaatggtat aaatttgttc cgcaggttca gagagcaata aactcccacg      3600
     tcaattgttc gacaaagaag acaccgttcc tacttatgtt tggtgtaaaa atgcggagta      3660
     agaccaacga taatcttatt gccttgctag aacaagagtt gctggacgaa ttcgatacaa      3720
     agaggaccaa agaacgcgag gaggccaaaa tcgagattca aaaagcacag gcgaattata      3780
     aaaggaatta cgacaaaaag cgaaaaaaag aaagcatcta caaagaaggc gatttagttg      3840
     caataaaacg cgcccagttt gttgccggga agaagcttgc gagtacctac cttggaccgt      3900
     atgtagtatc caatgttaag agaaatggac gttatgatgt caaaaaagct gctccaattg      3960
     aggggccaaa ctctacgtca actagctctg acaacatgaa gatgtggaaa tatgtcaact      4020
     ggaacgagga taatttgtcg tctgggacag actcgagtgg ccaggatgac cgaa            4074
//
ID   Gypsy-16_DRh-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DRh_;
KW   Gypsy-16_DRh-I; Gypsy-16_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-225
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1582-1582 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 225 BP; 89 A; 34 C; 47 G; 55 T; 0 other;
     tgtaaggaac agatcagttg ctgcaggttg gcagccctac agaagagaag tggcagtaga        60
     agagaagcag caaaagtgag cagacgcaag ttgtcctgaa ttaagtccgg aatatacaaa       120
     aaataagtcg aaaagtcgtt atatgtcgcg gagaatctaa gttgtatcaa ttttgtcaaa       180
     tcatatttaa ccaatataaa atataaacaa taaatcttca ttaca                       225
//
ID   Gypsy-16_DTa-I repbase;    DNA;    INV; 4557 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DTa_;
KW   Gypsy-16_DTa-LTR; Gypsy-16_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4557
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1626-1626 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3627-4106] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..3507
FT                 /product="Gypsy-16_DTa-I_1p"
FT                 /translation="MLVKLSQLKVPELDIILRTNNLPVVGNKSAKIDELTR
FT                 ILGCDEIERDDYELDTNSVQSQIDELKQLMISLSQTVQALSVQQGASTSGQ
FT                 SNGRNAEASPAVVEQQSLANTVGAPPPGEEQRHQRIRESPERTVYTNAIIK
FT                 DVIGVLPEYDPVRGNITSQQFISKTEQLQSVYEWNDGTVLFAVQHKMKGVA
FT                 KEWLDAQSVFQTWGQFKSSLLLDFPSVVNTADVHRELMRRKRKLNESFSEY
FT                 FYIMMAIGRRANIDEPSINSYIINGLNQNDCTKALLAMNLQTCSELFRSLE
FT                 NMKTVQALHQQSTPFQSVYMKGQEIAGGEAKAKGPKCFNCNQMGHIAAKCP
FT                 DPQKKPRCSICSKIGHEAKDCRVKVSSVAQVDAAITKEYPPIMKTIQLGGK
FT                 EFSAFVDTGSDHTLIRESAVPDGSIRQSSLKRLQGFGGSIVETKECILTSV
FT                 KTDRSEMYVRIPIVPDDVLPYNVLMGRDLLCKKDYDQIDNSGSIMLAVEEE
FT                 INFNISADINSSQRNEVTDMLNSYSDCFAEGLSNIGRCNTTVMDIEVTSAT
FT                 PILGRRYQVAFAKRDALRSQLELLLKHNIISKSTSPHASSAILVPKANGES
FT                 RLCIDYRALNAVTVKKRYPMPIVEEQLGKLSGNTYFTTLDMTSGYYQIPMG
FT                 QESKRFTAFMTPDGLYEFNVMPFGLVNAPMVFQEVIMDLLRQLEHQRNIIS
FT                 YVDEVIIPSKTVEEGLVVLNEFLQAIRSVGLTLRPSKCSFLQTKVKFLGHL
FT                 ITANGIQPGIEKTICISDYGTPQNDADVRRFLGITGFFRKFVKEYSMMAAP
FT                 LSKLLKKNQDFLWEAEQETAFRNLKEAIVSQPVLTLYDPARRHEVHTDASS
FT                 KGIAGVLLQEEDEGLRPVFYFSRLCSEAESRYSSYALEVLAITESLERFRI
FT                 YLVGSEFVVVTDCNAVATLKESTALQPPIARWWLRLQEFDFKCKHRPGEQM
FT                 PHVDGLSRHPVLPPEDSSITVADNVLKIVPIDEDWIYTMQMQDPKIKDIFE
FT                 VFRIKDASNQWSQIKTDYVINKNRLYRKTDDGNKLVVPQAIRWRVTKSNHD
FT                 DAGHFGTEKLWKG"
FT   CDS           3534..4532
FT                 /product="Gypsy-16_DTa-I_2p"
FT                 /translation="MRGYIKSYIASCPECCVNKVKGGKSDGELHLQEVVPI
FT                 PFRSINIDHIGPFIKSKTGNCHILVVVCAFTKYTFLIPTRNTKTTPVIKAL
FT                 KQIFSVFGQPVRLISDRGTSFTSKEFDNFINENGIQHIKTAVRTPRANGQA
FT                 ERMNKTLLSALKTSTAIDKDWDQNLGKIQWSMNTNINSTTKFTPNDLVFNF
FT                 NPRDVSKNRLIQALTQEYEPELNVELNRQQAEQNIKTEQQKWKIRYDAKHI
FT                 SPKKFSVDDLVMTDFVPAATGETHKLDPAFKGPYIVTKILGNDRYIIEDLP
FT                 DYSVSQRRYSNVVSIDHMKPWCALIPDLDTNDDDYDYSTED"
XX
SQ   Sequence 4557 BP; 1522 A; 950 C; 1028 G; 1057 T; 0 other;
     aatcagaagt gggatacgag ccacatatat caataaaatg atataaaaag ttgaatttta        60
     ttcacgaaga taagataatg aaggaatgca aaaattgaca aaacggcagc gccaaaacgg       120
     gctaagcaaa acggtcaaag gaaagaggtg gcaaaacggc aattttgcaa aacggccaca       180
     ctttttaaga agcgtcgcta cgaaaagcga aaagacacgg aaaaagaaag gaaaaaaaag       240
     aagaagcacc aagagtggga aacagagaag acgccacgga ccacgaagtt aactaaaatg       300
     ttagttaaac taagtcaact taaggttccc gaactggata ttattctacg cacgaataat       360
     cttccagtcg tcggaaacaa atcggcaaaa atcgacgaac tcacacggat cttgggatgc       420
     gacgaaattg aacgagatga ctacgaattg gatacaaatt cggtacaatc gcaaattgac       480
     gaactgaagc agttgatgat cagtttatcg caaactgttc aggccttgag tgttcaacaa       540
     ggggcttcaa cttctggcca atctaacgga aggaacgcag aagcatcacc ggctgttgta       600
     gagcagcaga gcctggcgaa cacggtaggc gcaccaccac caggtgaaga acaacggcac       660
     caacggatca gagagagccc cgaacgcaca gtttacacta acgccatcat caaggatgtg       720
     ataggtgtgt tgcctgagta tgatccagtt aggggcaaca taacgtcaca acagtttata       780
     agcaaaaccg agcagttgca gagcgtttac gaatggaacg atgggacagt gttgtttgct       840
     gtacagcaca aaatgaaagg tgtcgccaag gaatggttag atgcacagtc tgtattccaa       900
     acgtggggac agtttaagag ttccctgtta ctggattttc caagcgtggt gaacacagca       960
     gatgttcaca gggaattgat gcggcgcaaa agaaagctca acgaatcatt cagcgagtat      1020
     ttctacatca tgatggcaat tggaagaaga gcaaatatcg atgagccatc catcaattcg      1080
     tacattatta acggacttaa ccaaaatgat tgtacgaagg ctttgttggc catgaaccta      1140
     caaacctgct cagaactatt caggtctctg gagaatatga agacagtgca agcgttgcat      1200
     caacaaagta ctccttttca gtctgtgtac atgaaaggac aagagatagc gggtggcgag      1260
     gctaaagcca aaggaccaaa gtgctttaac tgtaaccaaa tgggtcacat agctgctaag      1320
     tgtcctgacc cgcagaaaaa gccacgctgt tcaatctgct cgaagattgg gcatgaagca      1380
     aaagattgca gggttaaggt atcatcggtc gctcaagtag acgcagcaat tactaaagag      1440
     tatccaccca taatgaagac aattcagctc ggaggaaaag agttttctgc attcgtcgat      1500
     actggcagcg atcataccct tataagagaa tcggcggttc cagatggatc aattcgacag      1560
     tcatcactga aacgcttgca aggatttgga ggatcaatag tggagactaa ggaatgtata      1620
     ctgacttcgg taaagacaga tcgcagcgag atgtatgtac gcattcctat tgtacccgat      1680
     gacgtacttc cgtacaacgt actgatgggc agagatttac tgtgcaagaa ggactacgat      1740
     caaatcgaca attcaggatc gataatgcta gcagtggagg aagaaatcaa cttcaacata      1800
     agcgccgata tcaatagttc ccagcgcaat gaggtgaccg atatgttaaa cagctattca      1860
     gattgctttg cagaaggcct ttccaatatt ggcagatgca ataccactgt tatggacatc      1920
     gaggtgactt cagcaactcc gatactgggt cgtcgatacc aagttgcatt tgccaaaagg      1980
     gatgcactcc gatctcagtt agaacttcta cttaagcaca atatcatcag taagagcacc      2040
     tcacctcacg cgtcatcggc tatattagtt ccgaaggcta atggagagag tcgcttgtgc      2100
     atcgactaca gagcgctcaa cgcagtcact gtgaagaaac gatatccaat gccaattgta      2160
     gaggaacaat taggaaagtt gtctggaaac acgtacttta caactctgga catgacttca      2220
     ggatactacc agattcctat gggccaggaa agcaagagat tcacggcatt tatgactccg      2280
     gatggacttt acgagtttaa tgtaatgcca tttggcttgg taaacgcacc aatggtattt      2340
     caggaggtca tcatggattt gttacgtcag ctagaacacc aacgcaacat aataagttat      2400
     gtagatgaag tcatcattcc atcaaaaacg gttgaagaag gacttgtcgt tttaaacgag      2460
     tttctgcaag caattcgatc ggttggacta actttacgtc catccaaatg ttccttcttg      2520
     cagactaagg tcaaattttt gggtcaccta ataactgcaa acggtattca gccaggaatc      2580
     gagaaaacca tatgcatcag cgattatgga acgccccaaa acgatgctga tgtacgcaga      2640
     ttccttggaa tcactggatt ctttcgcaag ttcgtcaagg aatacagcat gatggcagca      2700
     cctttaagta agcttctgaa gaaaaaccaa gatttcctgt gggaagctga acaagaaaca      2760
     gcattccgaa acttgaagga ggctattgta tcgcaacctg tattgaccct ttacgatcca      2820
     gcaaggcgtc acgaagtaca cacggatgca agcagcaaag gaatcgcagg agttctacta      2880
     caagaagaag acgaaggact taggccggta ttctatttca gcaggctttg ctcggaagct      2940
     gagagtcgct actcaagtta tgcactggaa gtactagcta tcactgagtc attggaaaga      3000
     ttccgcattt atctcgtcgg atccgagttc gtagtggtga ccgattgcaa tgctgtggca      3060
     accctcaagg agtcgacggc attacaacct ccaatcgcac gctggtggct gagactacaa      3120
     gaattcgact ttaaatgcaa acatcggcct ggagagcaaa tgcctcacgt agatggattg      3180
     agtaggcatc cagtacttcc accagaggac agttcaataa ccgtggcaga caacgtgttg      3240
     aagatagttc ccattgacga agattggatt tacacgatgc agatgcagga tccaaaaata      3300
     aaagacatct tcgaggtttt tcgtatcaag gacgccagta accaatggag ccaaataaaa      3360
     accgactacg ttatcaataa aaacagattg taccggaaaa ctgatgatgg caacaagttg      3420
     gtagtacccc aagcaatcag atggcgtgtg accaagtcca accatgatga cgcaggacat      3480
     tttggaacgg aaaaactctg gaaaggctaa ggaagtattt ctggttccca aggatgcgcg      3540
     gatacatcaa gtcctacatt gcgtcatgcc cagaatgctg tgtgaataag gtaaaaggtg      3600
     gaaaatctga tggtgaacta cacttgcaag aagtagtccc tattccgttc cgatcaatta      3660
     acattgatca cattgggcca ttcatcaaaa gtaaaaccgg aaattgtcac atactggtgg      3720
     ttgtgtgtgc ttttacgaaa tacacctttc taataccaac acgtaataca aaaacgacac      3780
     ctgtaatcaa agcgttaaaa caaatttttt ccgtttttgg gcaacctgta cgcctaattt      3840
     cggatagagg tacatcgttc acatcaaagg agttcgacaa ttttataaat gaaaatggaa      3900
     ttcagcacat caaaacagca gttcgcacgc cccgcgctaa tggccaggct gaaagaatga      3960
     ataaaacttt actcagtgca ttaaaaacga gcactgccat cgataaggat tgggatcaaa      4020
     acttaggaaa aattcagtgg agcatgaata caaacataaa ttccactaca aagtttaccc      4080
     caaatgatct ggtattcaac ttcaatccac gagatgtgtc caaaaatcgc ctaattcaag      4140
     cattaactca ggaatacgaa ccagaactta atgttgaatt gaatcgccag caagcagaac      4200
     aaaatataaa aacggagcag caaaaatgga agatccgata cgatgccaaa catatttctc      4260
     caaagaaatt cagtgtggac gatctggtta tgactgactt tgttccagct gctacaggag      4320
     agacacataa attggatcca gctttcaaag gaccttatat cgttactaag attcttggta      4380
     acgaccgata cataattgag gacctaccag attattctgt ttctcaaaga cgatacagca      4440
     acgtagtatc cattgatcac atgaagccgt ggtgtgcttt aatcccagat ctggatacca      4500
     atgatgacga ctacgattac tcaacagaag actaactctc gtcaggaaag gccgagt         4557
//
ID   Gypsy-16_DTa-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DTa_;
KW   Gypsy-16_DTa-I; Gypsy-16_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-168
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1627-1627 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 168 BP; 59 A; 30 C; 30 G; 49 T; 0 other;
     tgtcaaaaat aaggcagttc ggttggcaac gtcaaaggag agagacgtat gccgcacgct        60
     cacaagccaa caagttcatt ttataatttg tgttcttaaa tatattgatt aaactttgtc       120
     aataaatact ttaaaccatc ctgaacaaac gcagaggtat ttttgaca                    168
//
ID   Gypsy-16_DWil-I repbase;    DNA;    INV; 4867 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DWil_;
KW   Gypsy-16_DWil-LTR; Gypsy-16_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4867
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 8553748 8558614.
XX
CC   Positions [2252-2680] - Reverse transcriptase
CC   Positions [3821-4297] - Integrase core
CC   'AATA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..4678
FT                 /product="Gypsy-16_DWil-I_1p"
FT                 /translation="MSNAVQVSDLTLDQLKQWLATLNMPTNGSRNELVLRL
FT                 YSVPVETRGHAPPGWNEHDNSEHNLDDIQLMRPNPDQLNEASIGDAIPRSV
FT                 QQEAVNSNFNNNNDVALVQQLLQQLQLLIPRIEHGHDLGRSFQNLENNGNA
FT                 TGNVIDNNVANENIDDSSIPIHGNATVEATNQYSGNSNGESMGIAFSLAKE
FT                 VLMDFNGESCSKKWVAQLKNIGEVYNIGNTHLRMLFICKMKGKAHSWLHSE
FT                 VTRIREPVAVLCEQLMAAFGEKMSKSQMRRHFEQRNWKFGEKFAVYLDDKL
FT                 MLANNINIDEEELLDKVIEGIPDKGLRTQARIQCFANPKHMLAAFAEIHLE
FT                 DIRRATKDENETSRANKLQEMRCRRCNIRGHLVKDCNRPDRVPGSCFICGS
FT                 MEHWAAKCPDRKGSRETNGLNRTNQSSNNFVREFIIHFVDSPSNSFIAACL
FT                 IDSGSPVSLIKKKHLPNHSYLYSVEQSYQGLNGSPLITLGKLLCYVVKNSI
FT                 KIYFYLLVIPDESMSRDVIFGRDFLTSCNLKLDLDSFEKSALVTSQSHDNV
FT                 RKVNFKEIGMLTSEHMENEIVNISVTGNTENKNINANDKINTENVNADKEI
FT                 IEYNVVNKRTCIDKEMTLEFEKNIIKGTNEEKYRIEEIKLKEPRSESETNM
FT                 EDNFERRMLEIFYIDNGNPEPEYVIGENIDYKTAKSFDKLVRDRYVNAQRP
FT                 DKPNIRCEMKLNLENCKPFSYAPRRLSYSEKEKLQKLLDEYIREEIIRPSD
FT                 SEYASPVVLVKKKTGDIRLCIDFRKLNKMIIKDNYPLPLIDDLLDRLVNKR
FT                 VFSKLDLKNGYFHVFVDKESVKYTSFITPLGQYEFLRMPMGIKNASHVFQR
FT                 FINRIFEDMVRKGQVLVYMDDIMIASANTTEHLQTLEEVFDRLVRNKLRLR
FT                 MDKCEFFMSSIKYLGYKITENKICADDKGLDAVKNFPVPGNVHAVKSFLGL
FT                 CSYFRRFIKDFSIIAKPMYDLMKKDKEFQFGKEELECFLNLKQILLEAPVL
FT                 AIYDPRDDTELHCDASALGFGAVLLQKKADKKLHPIFYFSKRTSEVESKYH
FT                 SFELETLAIVYSLRRFRIYVQGKKFKILTDCNSLTLTLNKIELNPRIARWA
FT                 LELQEYDYELAHRSGKQMQHVDALSRCTNIMVIEPNSFEHNLVICQAKDLE
FT                 LKKIKEMLEKSEHKLFEMRNGVLYRKSNDKKILFYVPKEMENHVLYKYHDE
FT                 LGHVGRDKMLDAIGKSYWFPSLKDKATRHIENCLRCIAFSPKCGKGDGFLN
FT                 SIPKGDKPFELIHIDHYGPIEAGRSKKHIFAVVDGFTKFVRLYTTKTTKTK
FT                 EAIDALKAYFRSYSRPKCIISDRGSCFTSSEFESFLVEQKVQHVKIATGSP
FT                 QANGQVERINRTLGPMLAKLTDPDKGNYWDTVVENVEYALNNTIHRSIKQY
FT                 PSIMLFGIEQRGVVTDELKEEIKELRNTENQINLEMIRKNAALNQQKAQAY
FT                 NERYYNSKRTGQKEYKIGDYVMVKNFDSTTGISRKLIPKNKGPYVVDKVLK
FT                 NNRFLLKDVEGFQLSRNPYQGVWCGQNIKPWLRT"
XX
SQ   Sequence 4867 BP; 1810 A; 824 C; 1006 G; 1227 T; 0 other;
     atatcagaag tggtcctaac ccaaaactat gagtaacgca gttcaagtat ccgatttaac        60
     cctcgaccaa ctaaaacaat ggctagcaac tttaaacatg ccaacaaacg gctcaagaaa       120
     tgaattagtg cttcgtctgt atagtgtgcc agtcgaaaca cgtggtcatg ccccacctgg       180
     ttggaacgaa catgataatt cagagcataa tttagacgac atccaattga tgcggcctaa       240
     cccagaccaa ttaaatgaag cgtcaattgg cgacgcaatt ccgagaagcg tacaacaaga       300
     agcggtgaac tccaatttca acaacaacaa cgatgtcgcg ttggttcaac aattgctaca       360
     acaacttcaa ctgctgattc ctagaatcga gcatggtcac gatttgggca gatctttcca       420
     gaatttggaa aacaatggca acgccactgg caatgttatc gataacaatg tagctaatga       480
     gaatatcgat gacagcagca ttcccatcca tggcaacgcc acagtcgaag ccaccaacca       540
     atactctggc aactcaaacg gcgaatcgat gggtatagct ttttcactgg cgaaggaagt       600
     attgatggac ttcaacggcg agtcgtgctc caaaaagtgg gtggctcagc taaaaaatat       660
     cggtgaagtg tataacatag gcaacactca cttacgaatg ctattcattt gcaagatgaa       720
     aggcaaggcg cattcatggc ttcattcgga ggttacacgt attcgcgagc cagtagcagt       780
     actatgcgaa cagttaatgg cagcttttgg agagaagatg tccaagtcac aaatgcgtcg       840
     tcatttcgaa cagcgtaatt ggaagtttgg cgaaaagttt gcagtttatc tggacgacaa       900
     actaatgtta gccaacaata ttaacatcga tgaagaggag ctccttgata aagttatcga       960
     gggtatacct gacaagggat tacgcactca agcacggatc caatgtttcg ccaaccctaa      1020
     gcatatgtta gctgctttcg ctgagataca tctagaggac attcgacgcg caactaaaga      1080
     tgaaaacgaa actagcagag caaacaagct ccaagagatg cgctgtcgta gatgtaacat      1140
     tagaggacac ctggtgaagg actgcaacag gccggaccgt gtaccaggct cttgtttcat      1200
     ctgtggatcc atggagcatt gggcggccaa atgtccagat aggaagggca gccgtgaaac      1260
     taatggactc aaccgtacga accagagcag caacaatttc gtaagagaat tcattataca      1320
     ttttgtagat tcgccaagta attcctttat tgcagcgtgc ctcatagatt cggggagtcc      1380
     agtttcctta atcaagaaga aacatttacc taatcattca tatctttatt ctgtcgagca      1440
     atcttatcaa gggctaaatg gaagtcctct cattacattg ggaaaattac tatgttacgt      1500
     tgtgaaaaat tcaataaaga tttactttta tttactcgtt atcccagacg aatctatgag      1560
     tcgcgatgta atttttggaa gggatttttt gacatcatgt aatcttaaat tagatttaga      1620
     ttcttttgaa aaaagtgcgc tagtaacttc tcaaagccac gataacgtaa gaaaagttaa      1680
     ttttaaagaa attggaatgt tgacgtcaga acatatggaa aatgaaattg ttaatataag      1740
     tgtaacgggt aatacagaaa acaaaaatat taatgcaaat gataaaatta atacagaaaa      1800
     tgttaatgca gataaggaaa ttattgaata caatgttgtt aacaaaagga catgcataga      1860
     taaagaaatg actttagagt ttgaaaagaa tataattaaa ggtacaaatg aggaaaagta      1920
     taggattgaa gaaattaaat taaaggaacc ccgtagtgag tctgaaacaa atatggaaga      1980
     taactttgag aggagaatgt tagaaatttt ttacatcgac aatggaaacc cagaaccaga      2040
     atacgtgatc ggtgaaaaca tagattataa aacggctaag agttttgata agctagtcag      2100
     ggataggtat gtgaatgcgc aaagaccgga taagccgaat atcagatgtg aaatgaaatt      2160
     aaacctagaa aattgcaaac catttagtta cgcaccaaga cggttatcat attctgaaaa      2220
     ggaaaaacta cagaaattgt tagatgaata tataagagaa gaaattatca gaccaagcga      2280
     ttcggagtat gcgtctccag tagtgttagt gaaaaagaaa acaggggaca tcagattatg      2340
     catagatttc cgaaaactga acaagatgat tatcaaggac aactatccgt taccattgat      2400
     cgacgatcta ttagacagac tagtcaacaa gcgtgttttt tccaaattag atcttaaaaa      2460
     tgggtatttt catgtattcg tcgataaaga gtcagtaaaa tacacgtctt tcatcacgcc      2520
     gcttggtcaa tacgagttcc taagaatgcc aatggggatc aagaatgcat cacatgtttt      2580
     ccaaaggttt ataaaccgaa tttttgaaga catggtcaga aaagggcagg tcctagtata      2640
     catggatgat ataatgatag ccagtgcaaa tacaaccgag cacctacaga ctctagaaga      2700
     agtttttgat aggttagtaa gaaacaaatt aagactacga atggacaaat gcgagttttt      2760
     catgtcaagt ataaaatacc tgggatataa aatcacagaa aacaaaatat gtgctgacga      2820
     taaaggtttg gatgcagtaa aaaactttcc agtgccaggc aatgtacacg cagtgaaaag      2880
     tttcttaggt ttgtgctcct actttagaag atttataaaa gacttttcca tcatcgctaa      2940
     acctatgtac gacttgatga aaaaagacaa agaatttcaa ttcggaaaag aggaattaga      3000
     atgctttctc aacttgaagc aaatactatt ggaagcacca gtattggcga tatatgaccc      3060
     cagagacgat acagagcttc attgtgatgc aagcgcatta ggttttgggg cggtcttatt      3120
     acaaaagaaa gcggataaaa aactacaccc aatattttat ttttcgaaga gaacaagcga      3180
     ggttgagtcg aagtatcaca gttttgaact cgaaacgtta gcgattgtgt actccctgcg      3240
     cagatttagg atttatgtcc aaggaaagaa atttaaaatt ttaactgact gcaattctct      3300
     gactcttaca ctaaataaga tagaattaaa ccctaggatc gcgagatggg cccttgaact      3360
     ccaagagtac gactacgagt tagcacatag atcagggaag caaatgcagc acgtagacgc      3420
     gttaagcaga tgcaccaata tcatggtaat agaaccgaat agcttcgagc acaacctagt      3480
     tatttgccaa gcaaaagatt tagaactgaa aaaaataaag gaaatgctag aaaaatcaga      3540
     gcacaaattg tttgaaatga gaaacggagt attataccga aagtccaatg acaagaaaat      3600
     attgttctac gttccaaaag aaatggaaaa tcacgtttta tacaaatatc acgatgaatt      3660
     aggccatgta ggtagagaca aaatgttgga cgcaataggc aaaagttatt ggttcccaag      3720
     tcttaaggat aaagcaacga gacatataga aaattgtctc agatgcatag cattctcacc      3780
     taaatgcggc aaaggcgatg gatttctgaa cagtataccg aaaggcgata aacctttcga      3840
     gttaatccat atcgatcact atggaccaat agaagctgga aggtctaaaa aacacatatt      3900
     tgcagtagta gacggtttta cgaaattcgt taggctatat acaacaaaaa ccacaaaaac      3960
     aaaagaagca atagatgctt taaaagcgta ttttagaagt tatagcaggc cgaaatgcat      4020
     aatatctgac agagggagtt gttttacttc gtctgaattc gaatcctttt tggttgaaca      4080
     aaaggtgcag cacgttaaaa tagcaacggg ttcccctcag gccaatgggc aagtagaaag      4140
     aataaacagg actctagggc ctatgctggc aaagttgaca gatccagata aggggaatta      4200
     ctgggatacg gttgtcgaaa acgtagagta tgctttaaat aatacaattc acagaagtat      4260
     aaaacagtac cccagtataa tgttatttgg catagaacaa agaggagtag ttacagacga      4320
     actgaaagaa gagattaaag agctaagaaa tacagaaaat caaataaacc ttgaaatgat      4380
     aagaaagaat gcagcgttaa accagcaaaa agcacaagca tataatgaaa ggtattacaa      4440
     tagtaaaaga acagggcaaa aagaatataa aataggggac tatgtcatgg ttaaaaattt      4500
     cgacagtaca acgggaatat ctcgaaaatt aataccaaaa aacaaaggac catatgtagt      4560
     agataaagta ctgaaaaaca acagattttt actgaaagat gtagagggat ttcaactttc      4620
     ccgtaacccg tatcagggag tatggtgtgg ccaaaatatt aagccctggt taagaacttg      4680
     aaatagttga ctttaatgta atcataaact tttgttttaa taattgatat aagatgtata      4740
     taaaagaaaa atgtatgtaa tagtttgtaa aatataaaca aaaaaaaaat gtgtatagct      4800
     cgtaagatat gaaaaaaatg tataccaccc aagatcagga gatcttattt tgtcaggacg      4860
     gccgaat                                                                4867
//
ID   Gypsy-16_DWil-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   scaffold_180708;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_DWil_;
KW   Gypsy-16_DWil-I; Gypsy-16_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180708; Positions 8553526 8553747.
XX
SQ   Sequence 222 BP; 76 A; 46 C; 46 G; 54 T; 0 other;
     tgtagcaggc ttgctcactt aagacggtag tacctctctc tcatgtctca gagagagaac        60
     atgctcgtct ctaaatgaga gcgaagtacg agagagcgtc gagtcagtct gggttgaacg       120
     agcttgcaaa tcggtcgtgc taacgaggat aaaaatcata gatcacactt acatataata       180
     aatacatata tataaacaat tcaaccgaaa cagcctatta ca                          222
//
ID   Gypsy-16_HeAr-I repbase;    DNA;    INV; 6893 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6893
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5564-5564 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..1591
FT                 /product="Gypsy-16_HeAr-I_1p"
FT                 /translation="MSELDIIYKSLRLVPDFDGNPNVLTRFLKLCDQLVAE
FT                 FCSAGSSELSRCALLNGILNKVTGSAARLINSNGIPSDWQGIRTALVNNFA
FT                 DQRDETALYNDLAILSQGSSTAQEFYERCQNLYSTIMTYVSLHDTLETTIN
FT                 AKRDLYRKLTLQAYLRGLNDPLGSRIRCMRPETIEKALEFVHEETNTMYLQ
FT                 NRNQRLPDKKSINSMPVPNHFVSAYKMPNQQFSMPVPKPFNYNMHGFSRPN
FT                 LVSPSAPQWRQNMYQPRQFGPTRTQQIFRSPPQNYNPQQNNFQIGSRPNHQ
FT                 VFNQPRPMSGVSHYVTRQLPPTQPAITGHNWIKSGNPPPTNYFKSKEVNYN
FT                 SFIDNSTYDEYADYNYYDISDCVEYQQPYEYSVQELSENSTDTPQVEADIV
FT                 KTNEQDFPKDRESDILK"
FT   CDS           1477..3510
FT                 /product="Gypsy-16_HeAr-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H
FT                 (partial)."
FT                 /translation="IFCTRTFRKFYRYAPGGSRYSENERAGFSEGPGIRHL
FT                 KIEINLQTQRQLPYIQIASPPIKLLIDTGANQSFLCPEAVERYFSNVPVNY
FT                 EPFEVKNFHTTSRNYYSITLPSFKEFNNSDNTTFYIYKFHDYFDGLIGTDL
FT                 LDKWEAVIDYKNKLLKTKTASNAIKVYDSRNANLYEDIIPANTSKLLKIPI
FT                 NIHDGHAFIEEQTISNCIIGECLTTVSNNRGIVEVTNPSRSDVIFSMDRAI
FT                 SAEVYNVQCTPGNNQQDRVKEVISRLRTDHLNVEERTNLELLCAQYADVFY
FT                 LEGEPLTFTNKIKHSIKTTDEVPVYTKSYRYPYVHRQEVQEQIGKMLEQGI
FT                 IRPSNSAWSSPIWVVAKKADASGKTKWRIVVDFRKLNEKTVDDKYPIPNIA
FT                 DVLDKLGNCQYFTTLDLASGFYQVEMNPQDIPKTAFNVEHGHFEFLRMPMG
FT                 LKNSPSTFQRVMDNVLRELQNTICLVYLDDIIVFSTSLQEHIINLEKVFKK
FT                 LRESNFKIQMDKSEFLKLETAYLGHVISKDGIKPNPEKISAIKKYPLPNTR
FT                 TEIKRFLGLLGYYRKFIPDFAKITKPLTQCLKKGSKIVQDQNFIKCFEKCK
FT                 TLLVNDPILQYPDFSKEFILTTDASNLAIGAVLSQGPIGSDKPIAYASRTL
FT                 NTSEINYSTIEKNYSPLCGQRSTFGRIFW"
FT   CDS           3455..5221
FT                 /product="Gypsy-16_HeAr-I_3p"
FT                 /note="ribonuclease H (partial), and integrase."
FT                 /translation="KRITRHCVGNEVLSAVSFGRKFKIMTDHRPLQWVMNM
FT                 KEPNSRLTRWRLRLSEYDYTVIYKPGKINSNADALSRIEIHNEESSSIVVN
FT                 TSDKSDSERTKSIDSRTDSIHSDLESPILEVPITDDPLNRFSRQIVFNVVG
FT                 NIKIKPHITHPFETYTKTCIQISKSNLEQDIIDAIKEYVTPGLKTGILINP
FT                 SIEMYKIIPVIQRYFKNSAMNLVLSKLEVEDVKDYLKQQEIIKNYHEGKTN
FT                 HRGINECYLALSKRYFWPKMKDQISKFINECLICGQAKYDRNPVRPRYQIV
FT                 PPPTRPFEVVHLDLFSVDSNKYLTIIDAFSKYAQAYSLRDATAVSVIQALL
FT                 KFSSHHGMALKYITDNGPEFTNQLFSEFTKLHKIQHHRTCPNTPNENGMIE
FT                 RFHNTLLEHLRILKLEHRNESVCNLMPYAVMAYNSSIHSFTKCRPIDIITG
FT                 HLDPRDPLDMDTTQHLLQEYIVDHRKRMLKVYEIIHETALQRRTEITESIN
FT                 KNREPEQIYAHDQRVLVRNPLANRQKLAARYTPDTVVTDLPIHIYTKRKRG
FT                 PVPKSRLKRVPNSARLLQDTENTNRVDAGSSPEAGTSGRDNT"
FT   CDS           5444..6868
FT                 /product="Gypsy-16_HeAr-I_4p"
FT                 /translation="YVRSVVNFSRKTFKRGLINGLGSIIKSISGNLDYTDA
FT                 LKYENAIAMLQKNENNLAMEINHQISLSKQWASQSSNVTDRIVENQKKIEN
FT                 IIKNILDNDARKEEDAIKYFHLEQLLTMLGDDIDNLSQELSKLQNLLAFIK
FT                 AKSIHYSVLDYDTYKVMLNKLRSLYNSEVVLDINFREYLDLLRLGYYYKDN
FT                 DIILVIKFPIMNPNNFILYKLSLAPNSNNEVIIPTYPYVAIHEKDLLYIET
FT                 ECPKYSHGHLCEDSLNRHYGEQTSCIQHLILQQHIHETCRATRVILSSQAM
FT                 EQLDDRHYVLSFPNLTKVHLTCFQDQYRNLHGSYLAEIPQGCALQTSIFTI
FT                 ANHHDQVKGRVLKMLNIEYSNENPYKATAKNILKLNSIDLSHLHSTNIRIA
FT                 SQQPVTLDTSNLDTLYHTTIPVYLLIGASVLIISIVLIRRKCVPSKNINQR
FT                 EEEITRTQEVQDSPSDPMSLSALFSTKVSK"
XX
SQ   Sequence 6893 BP; 2404 A; 1369 C; 1203 G; 1917 T; 0 other;
     ggcgcagtcg gtaggatgct cgcggtacgt ttcgcgtaga agatttccgt aatcgcgtga        60
     agctccgccg tagcttgtct agctgcatcc agagcatccg aatctacaag tagtgctgca       120
     ccagaggtct atctagacat cgatagcgca gagggaccga aacatgttca tgtgagtaca       180
     ctagattctt tttagtggtt gctcagtcct agccttacta acctgtgtta aaatataatt       240
     tgccaagatt tttcatttaa gaagatcaaa ggaccctagg atagttacta gtaataggca       300
     actttttata gatagaagaa gaaatcttag tttgagtagt atagaagaag aaacggatat       360
     gtctgaatta gatatcattt ataaatcctt aagattggta cccgacttcg acgggaaccc       420
     gaatgtgctc actagatttc taaaattatg tgaccaatta gtagctgagt tttgtagtgc       480
     aggcagtagt gaattaagta ggtgtgctct tctcaatggg attctgaaca aagtaacagg       540
     ctctgctgct cgcttaatca attctaatgg gattccatcc gattggcaag gcattcgaac       600
     tgctttagtg aacaacttcg cggaccaacg agatgagacc gctctatata atgacttagc       660
     aattttatcg caaggttcta gcaccgcgca ggagttttat gaacgttgtc agaatctata       720
     cagtactata atgacttatg tgagcttgca tgatacccta gagactacta ttaatgctaa       780
     acgagatctt tatcgtaaat taacgcttca agcgtatttg cgtggtctga acgatccctt       840
     aggatcgcgg atacgttgca tgcgcccgga aaccatagaa aaagcattag aatttgtgca       900
     cgaggagacg aataccatgt atctacaaaa tcggaaccaa cgactacctg acaaaaaatc       960
     tatcaattct atgcccgtgc caaatcattt tgtaagtgcc tataaaatgc ctaaccaaca      1020
     gttttcaatg cctgtgccta aaccttttaa ctataatatg catggctttt cacgccctaa      1080
     tttagtttca ccatctgcac cgcaatggag acagaatatg tatcaacccc gccaatttgg      1140
     tccaactcgt acgcaacaaa tttttagatc accaccccaa aattataacc ctcaacaaaa      1200
     taactttcaa ataggttcgc gtcctaacca ccaagttttt aaccaacctc gtcctatgag      1260
     tggtgtcagc cattatgtaa caagacaatt accacctact caaccagcta ttacaggaca      1320
     taactggata aaatcaggga acccaccccc tacgaactac tttaaatcta aagaagtaaa      1380
     ttataatagt ttcattgaca attctacata cgatgaatat gctgattata attattacga      1440
     tattagtgac tgcgtagaat atcagcaacc gtatgaatat tctgtacaag aactttcaga      1500
     aaattctaca gatacgcccc aggtggaagc cgatatagtg aaaacgaacg agcaggattt      1560
     tccgaaggac cgggaatccg acatcttaaa atagaaatta atcttcaaac acaacgtcag      1620
     cttccatata tccaaatcgc gtcaccacct ataaaactct taatagatac aggtgcaaat      1680
     caatcctttc tgtgtcccga ggcagtggaa agatacttca gtaacgtacc agtaaattac      1740
     gagccttttg aagttaagaa ttttcataca acctctagga attactattc aattacgtta      1800
     cctagcttta aagaatttaa caattccgat aatacgacat tttacattta taagttccat      1860
     gattatttcg atgggcttat cggtacagac ttattagaca agtgggaggc tgtaatagat      1920
     tataagaata aattactaaa aactaaaact gcttcaaatg ctattaaagt gtatgattcg      1980
     cgcaacgcaa atttgtatga ggatattata ccggcaaata cttccaaatt acttaaaatt      2040
     ccaattaata ttcatgacgg acatgcattt atagaagaac aaactatttc taattgcatt      2100
     attggcgaat gcttaactac tgtttcaaat aataggggaa tagtagaagt aactaatcca      2160
     agtcgaagcg acgttatatt ctccatggac cgcgcgatct ctgcagaagt gtataatgta      2220
     cagtgtacac ctggaaataa ccagcaagac cgcgtaaaag aagtgatttc gcgcctacgc      2280
     actgatcact taaatgtcga ggagcgtacg aacttagaac tgctttgtgc tcagtatgca      2340
     gacgttttct acttagaagg agagccctta actttcacca acaaaataaa acattcgatt      2400
     aaaacaacag atgaggttcc agtttacaca aaaagttatc ggtatccgta tgtccataga      2460
     caggaggtac aggaacagat aggtaagatg ctagaacagg gaatcattag accttcaaat      2520
     tcagcatgga gctccccaat ttgggttgta gctaagaaag cagatgcgtc aggaaaaact      2580
     aaatggcgta tagtagttga ctttcgaaag cttaatgaaa aaactgtaga tgacaagtat      2640
     cccattccca acatagccga tgtcttagat aaattaggta attgccaata ttttacaact      2700
     ttagaccttg ctagtggctt ttaccaagta gaaatgaacc cacaggatat accgaaaact      2760
     gcttttaacg tagaacatgg ccatttcgaa tttctacgca tgcccatggg tcttaaaaat      2820
     agtccatcta cttttcagag agtcatggat aatgtgttga gagagcttca gaatactatt      2880
     tgtctagtat acctagatga tataatagtt tttagtacat cccttcagga gcacataatt      2940
     aacctagaga aagtattcaa gaaattacgc gagtccaatt ttaaaataca aatggacaaa      3000
     tcagaattcc taaaattaga aacggcttac cttgggcatg ttattagcaa ggatggtata      3060
     aaacctaatc ctgagaaaat atcggcaatt aaaaaatacc ccttgcctaa tacccgtaca      3120
     gaaataaaac gttttctagg attacttggt tattatagga agttcatacc agattttgct      3180
     aaaataacca agcctctgac ccaatgcttg aagaaaggtt ccaaaattgt tcaagatcaa      3240
     aattttatca aatgctttga aaagtgtaaa actctacttg ttaatgatcc aatccttcaa      3300
     tatccagact tttcaaaaga atttatactc acaacagatg cttcgaattt agcaattgga      3360
     gccgttcttt ctcaaggtcc cattggatca gataaaccaa tagcatacgc atcgagaaca      3420
     cttaatacca gtgaaataaa ttatagtact atagaaaaga attactcgcc attgtgtggg      3480
     caacgaagta ctttcggccg tatcttttgg taggaagttt aaaatcatga cagaccatcg      3540
     gcctttgcaa tgggtaatga atatgaaaga acccaattcc cgcttaacac gttggagatt      3600
     acgcctaagt gaatatgatt atacagtcat ttataaacca gggaaaatta attccaacgc      3660
     cgacgcttta tcaagaatag aaatccataa tgaagagtct agttctattg tcgttaacac      3720
     ttctgacaaa tccgattcag aaagaaccaa aagtatcgac tcaagaaccg atagtattca      3780
     tagtgattta gaaagcccca tattagaagt acctattact gatgatcccc tcaacagatt      3840
     tagtagacaa atcgtattta atgtggttgg caatattaaa attaaacctc acataactca      3900
     tcctttcgaa acttatacaa aaacttgcat acaaatctcc aagtcaaacc tagaacaaga      3960
     tataatagat gctataaaag aatatgttac cccgggtcta aaaacaggaa tcttaattaa      4020
     tccctcaata gaaatgtata aaattatacc ggtcatacaa agatacttca aaaattcagc      4080
     aatgaatcta gttctttcca aattagaagt tgaagatgtt aaggattacc taaagcaaca      4140
     agaaattatt aagaactatc atgaaggcaa gacgaaccat agaggcatta atgaatgtta      4200
     tttagctctg tctaaacgtt atttctggcc aaaaatgaaa gaccaaattt caaaattcat      4260
     aaatgaatgt cttatttgcg gtcaagcaaa atatgaccgt aatcctgtaa gacctcggta      4320
     tcaaattgta ccaccaccta ccaggccttt tgaagtcgta catttggatc tatttagcgt      4380
     agacagtaat aagtacctaa caattatcga tgcattctcg aaatatgcac aagcatattc      4440
     tttgagagat gctacagctg ttagtgtaat ccaggctcta ttaaagttct cttcccatca      4500
     tggtatggct cttaaataca ttacggataa tggcccagag tttacaaatc agctattttc      4560
     tgaattcaca aaattacata aaattcaaca ccatagaaca tgccccaata cacccaacga      4620
     aaatggaatg atagaacgct tccataatac cttactcgaa cacttgcgta tcttaaaatt      4680
     agaacaccgg aatgaatccg tttgcaatct tatgccatac gctgtaatgg cttacaatag      4740
     ttcaatccat tctttcacga aatgtcgccc tatagacata attactggtc atttagatcc      4800
     gcgagatcct ttagacatgg atacaacaca gcatctattg caagaataca tagtagatca      4860
     ccgtaagcga atgttaaaag tatatgaaat tattcatgaa accgcgcttc agcgtcgtac      4920
     tgaaataacc gagagcatta ataaaaatcg cgagcctgag caaatatatg cacatgatca      4980
     gcgagtcctt gtcagaaatc ctttagctaa tagacagaaa ctagctgctc gctatacgcc      5040
     tgatacggtt gttacagatt tacctataca catttataca aaaagaaaga gagggcccgt      5100
     acccaagtcg cgcctgaaac gggtacctaa tagtgctcgt ttgttacagg atacagaaaa      5160
     tactaatcgc gttgatgctg gctcaagccc tgaagcaggg acaagcggac gagataacac      5220
     ttgaaagcct agaaaatggt ccgggtatcc tccccttcaa cctgggaccc actagagtca      5280
     tttctcattt ccattccttc attcaaatta taaatttaaa taatgtgcga aatagattag      5340
     aatctgttag agaaaactta agcaatctag cacccgactt aaataataaa acgtcattac      5400
     tttacgctcc tcatatcaaa taccttgcta caaaattaaa tgatatgtca gatcagttgt      5460
     taacttttca aggaaaacgt ttaaaagagg ccttataaac ggtcttggtt ccataatcaa      5520
     aagtatctcc ggtaatttgg attatacaga cgcattaaag tacgaaaatg ctattgctat      5580
     gctacaaaag aatgagaata acttagcaat ggaaataaac catcaaataa gtttaagcaa      5640
     gcagtgggca tcccagagtt caaatgttac agataggata gtagaaaacc agaagaaaat      5700
     agagaacatt attaaaaata tcttagataa cgatgctagg aaagaggaag acgcaattaa      5760
     gtattttcat ttagaacagc tacttacaat gctaggcgat gatatagata acttgtctca      5820
     ggaattgtca aaattacaga atctattggc attcataaaa gctaaaagca tccattattc      5880
     tgttctcgat tatgatactt ataaagttat gttaaataaa ttaagaagtt tatataattc      5940
     agaagtagtg ttagatatta attttagaga atatttagat cttttaagat taggatatta      6000
     ttataaagat aatgatataa tcttggtaat taagttccca attatgaatc ctaataactt      6060
     catcctttat aaattatcct tggcccctaa tagtaataat gaagttataa tccctaccta      6120
     tccatacgta gcaatccacg agaaagatct actgtatata gagacagaat gtccgaagta      6180
     tagtcacggt catctttgcg aggacagctt aaaccgacac tacggagagc aaacgagctg      6240
     cattcaacat cttatacttc agcaacatat ccatgaaacc tgtcgagcaa ctcgagtaat      6300
     cttatcgtct caagccatgg aacaattgga tgatcgccac tacgttctga gctttcccaa      6360
     cctaacgaaa gttcacttaa cctgtttcca agatcaatac agaaaccttc acggaagtta      6420
     tctagccgaa atacctcaag ggtgtgctct acaaacgtcc atctttacca tcgctaacca      6480
     ccatgatcaa gtgaaaggac gagttttgaa aatgctgaat atagaatata gtaatgaaaa      6540
     cccatacaaa gcgacagcga agaacatctt gaaattgaat agcatagatt tgagtcactt      6600
     acactcaacc aatatcagaa tcgcctctca gcaaccggtg actttggata cgtcgaactt      6660
     agacactctc tatcacacga ctatacctgt ctatctgctc atcggtgcat cagtactcat      6720
     tataagcatc gtcctcatcc gccgtaaatg tgtgccttcg aagaatatca accagaggga      6780
     agaagaaata accagaacac aagaagtcca ggacagcccc agcgatccta tgtctctatc      6840
     agcactattt tcgacaaaag tctccaaata gctgctgatc ctgcggaggg agt             6893
//
ID   Gypsy-16_HeAr-LTR repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-332
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5594-5594 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 332 BP; 93 A; 71 C; 57 G; 111 T; 0 other;
     tgttaagaaa taatcacacc atgtatgatt caccgcgatc cgttccttga agctgccacc        60
     atcgatgctt tgtttcgcaa gacctcccga acgccgagcg ctaccgggaa atatcatacc       120
     gtggggacca acctgtgatt cagtgattgc gttatattgt tcgttttaat tcaattataa       180
     tttagacttt agagatcact ttttgttctg acatcgaaca gattgtcgcg tgttagaaat       240
     aattaattgt aacattaatt acttaattaa acgtattata agtcaattcg tttcggttca       300
     ttttgcatcc tcaacgacag ccctacctaa tt                                     332
//
ID   Gypsy-16_LH-I repbase;    DNA;    INV; 4405 BP.
XX
AC   ADOQ01010831;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_LH_;
KW   Gypsy-16_LH-LTR; Gypsy-16_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4405
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010831; Positions    4825     421.
XX
CC   Positions [1889-2395] - Reverse transcriptase
CC   Positions [3467-3943] - Integrase core
CC   'ATAA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(224..1825,1829..4339)
FT                 /product="Gypsy-16_LH-I_1p"
FT                 /translation="MAEPGSSAINDDLNAKLADMTTVQLKDELKRRKLKTT
FT                 GLKNELILRLSAIMQIERDHGELEQHGNIKNKNDDEDTYRGQEDTSKSNTT
FT                 SSDDDEEPIERRRNRTRNLQRNQLLTFRDVEESLETFSGDDKVDVTRWIKD
FT                 FEEMAALCEWSDIQKMAYGKRLLRGSAKLFVNYEKCTKTWKKLRKALIEEF
FT                 ADVVDSHTVHQELARRKKKSDESYHAYIYKMLQIAVQADVDTRSVIQYIVE
FT                 GVQDDAVNKTVLHGAKTIRELKEKFTQYEAIRREGKSKIKLPKQEEDKKKK
FT                 TIQGDASSAEKRRCFNCGSRDHLGKTCPTKDKGAKCFKCNQYGHIAKICKE
FT                 TVSTQKEAAYVIAKTPRQKQLKQVEIANQHFISVIDTGSDLSLINRDCYEK
FT                 IGCPKLKNKINFDGVGALNNSTYGSFTISVIIDSEIYEIIFHVVDNQIMKH
FT                 AILIGADFLNQVELHAIKGQVTIRKIVPDMPKVLKIDTVENTDLFDFSHIS
FT                 DKNAQREVEIMTRKYKPKKTREIDIKMTLILKDDIPIYKSRRLSQSEKEEV
FT                 DKQLKTWLDDDIIRPSNSEYASPVVLVRKKNGDTRICVDFRKLNKKVVKDR
FT                 YPLPLIEDQLDRLQDAKIFSTLDMKNGFFHVKVDEESRKYTSFLVPTGQYE
FT                 FIRMPFGLCNSPAVFQKFVNAVFKDLINKGIVLTYMDDLIIPSQNIKQAID
FT                 NLKRVFEISSQAGLHINCRKCRFLQTKIEYLGHTVENGTVRPSEHKTNAVM
FT                 KFPIPKCIRDVQSFLGLTGYFRKFIFQYSIIARPLTNLLKANTEFKFRKDE
FT                 QYAFQKLKNALSDKPVLKLYKQGAETELHTDASKFGYGAVLFQKDYSDNMF
FT                 HPIYYASGKTTSAEENYTSYELEVLAIIKSLKKFRVYLLGIPFKIITDCKA
FT                 FTLTMNKKDLCVRIARWALALEEYNYEIQHRSAKSMIHVDVLSRNPLPEAL
FT                 LINESNNSLIARFMKAQNTDQDLQNIIKLATLNKADGYIIKNNLLYRDDND
FT                 ELLLVVPKTLQTSIIRQAHEQGHFSANKTETLLRKDYWFKGMRQKIKKIVT
FT                 SCINCILAERKQGKQEGFLNVISKGDIPLDTYHIDHLGPLPSTKKSYRNIF
FT                 IIVDAFSKFVWLYATKSTDTAKVLDRLRKQSVIFGNPRRIISDRGVAFTAS
FT                 AFKDYCSEEKIQHLLITTGIPRGNGQVERINRTLIPLLTKLSAPKPEEWFK
FT                 FLDTAQKYLNATLSRSTGRTPFQLMFGTHMRLKENPQVREMIENEWARMYE
FT                 EERDDIRQQAKEKIAEIQRENIKNYNKKRKKAQTYKTGDLVAIKRTQLGPG
FT                 LKFRGKFLGPYHVTKVMRHDRYVVTKIGDHEGPTETSTSADFMKPWLRYDN
FT                 EDTESEGE"
XX
SQ   Sequence 4405 BP; 1763 A; 704 C; 812 G; 1126 T; 0 other;
     taaattgggg gctcgtccta gcttagagta cattatcagt gttaagcaag tgcaaaacat        60
     aagacaaggt gttaaaaatc gcatcgagct gttcacgtcg tatcaaggtg ttcaagtcgt       120
     atcaaggtgt acaagtcgaa acaaagtgtt taagtcgtgt cacgttgttc aagacgaatt       180
     aagacgattc acataagaag atttaagacg tgttacttta acaatggcag aaccaggtag       240
     tagtgcgata aacgacgatc taaatgcaaa actggcggat atgacgacgg ttcaactaaa       300
     agacgaacta aaaagacgaa aattaaagac gaccggatta aagaacgaac tcattttaag       360
     actatcagca attatgcaaa ttgaacgcga tcatggtgaa ctagaacaac atggcaatat       420
     caagaataaa aatgacgacg aagatacata cagagggcaa gaagacacta gtaaaagtaa       480
     tacaacttcc agtgacgatg atgaagagcc gatcgaaaga agacgaaata gaacgagaaa       540
     tttacaaaga aatcagctat taacatttag agatgtcgaa gaatctctag aaacattcag       600
     tggagacgat aaagtagacg taacaagatg gattaaagat tttgaagaaa tggctgcatt       660
     atgtgaatgg tccgacattc aaaaaatggc ctatggaaaa cgtcttcttc gtggttcagc       720
     aaaattattt gttaattatg aaaaatgcac gaagacatgg aagaaattac ggaaggcttt       780
     aatagaagaa tttgctgatg tcgtagatag tcatacggta catcaagaat tggcacgccg       840
     aaagaaaaaa tctgacgaat cgtaccatgc gtacatatat aaaatgcttc agatcgccgt       900
     acaagctgac gttgacacac gatcagtaat ccaatatata gtcgaaggcg ttcaagatga       960
     tgcagttaat aaaactgtat tacacggagc aaaaacaata cgtgaattaa aagaaaaatt      1020
     tacacaatat gaagctataa gaagagaagg aaaatcgaaa ataaaactac cgaaacagga      1080
     ggaagataaa aagaagaaga cgatccaagg agacgcaagt tccgcagaaa aaagaagatg      1140
     cttcaactgt ggcagcagag atcatctagg caaaacctgc ccaacaaaag acaaaggtgc      1200
     caagtgcttc aaatgtaatc aatacggaca tatcgccaaa atatgcaaag aaactgtaag      1260
     tacgcaaaaa gaagccgcat atgtaattgc taaaacgcca cgacaaaaac aattaaagca      1320
     agtagaaatc gcgaatcaac attttattag cgtcatagac acaggtagtg atttaagttt      1380
     aataaaccga gattgttacg aaaaaatagg ttgtccaaaa ttaaaaaata agataaattt      1440
     tgacggtgta ggtgcgttga ataatagtac gtacggttct tttacaataa gcgttattat      1500
     agatagcgag atatatgaaa ttatatttca cgttgttgat aaccaaataa tgaaacatgc      1560
     aatcttgatc ggtgctgact ttttgaatca agtcgaatta catgcaataa aaggtcaagt      1620
     cacaattcgt aaaatagttc cagatatgcc taaagtatta aaaattgaca cagtggaaaa      1680
     cacagactta ttcgattttt cacatatttc tgataaaaat gctcaacgag aagtagaaat      1740
     catgacgcga aaatataaac ctaaaaagac acgggaaatt gatattaaaa tgacattgat      1800
     attaaaagac gatataccaa tttattaaaa gtcacgtaga ttatctcagt cggaaaaaga      1860
     agaagtcgat aaacaactaa aaacttggtt agacgacgat ataataagac cttctaactc      1920
     agaatacgca agtcccgtag tattagttag aaagaaaaac ggtgatacaa gaatatgtgt      1980
     agatttcaga aagttaaaca aaaaagtcgt aaaagatcga taccctttac cactaattga      2040
     agatcaatta gatcgattac aagatgccaa aatttttagt acacttgata tgaaaaacgg      2100
     attctttcat gttaaagtag atgaagaaag cagaaaatat acttcttttt tagtaccaac      2160
     cggtcaatac gaattcatac gaatgccatt tggactttgt aattccccag ccgtatttca      2220
     aaagtttgta aatgccgtat ttaaagacct tattaataaa ggaattgtat taacttacat      2280
     ggatgactta atcattccgt cacaaaatat taaacaagca atagataatc tgaaacgcgt      2340
     gtttgaaata tcaagtcaag ctggcctaca tattaattgt cgtaaatgtc gatttcttca      2400
     gacgaaaatt gaatatttag gacataccgt agaaaacgga acagtacgac cttcggaaca      2460
     taaaactaat gccgttatga aatttccgat tccgaaatgt attcgagacg tgcaaagttt      2520
     cctcggactt accggttact ttagaaaatt tatttttcaa tactcaataa tagcccgccc      2580
     tttaacaaat cttttaaaag caaatacaga atttaaattc agaaaagacg aacagtatgc      2640
     atttcaaaaa ttaaaaaacg cattaagtga taaacccgtt ttaaaattat ataaacaagg      2700
     agctgaaaca gagttacata cggatgcctc gaaattcggc tatggcgcag tcttatttca      2760
     aaaagattat tcagataaca tgtttcatcc aatctattac gcaagcggta aaactacttc      2820
     agctgaagaa aattacacta gttatgagtt ggaagtatta gcaatcatta aatcgttgaa      2880
     aaaattcagg gtatatctat taggcattcc tttcaaaata attactgatt gtaaagcatt      2940
     tacattaacg atgaataaaa aagacttatg tgtacgcata gccagatggg ctcttgcatt      3000
     agaagaatat aactatgaaa ttcagcatag atcggcaaaa agcatgatac acgtagatgt      3060
     tttaagcaga aaccctctcc cggaggcttt gttaattaat gaaagtaata atagtttaat      3120
     agctagattc atgaaggcac aaaataccga tcaagatttg caaaacatta ttaaattagc      3180
     aacactaaat aaagctgacg gttatataat aaaaaataac ttattatatc gagatgataa      3240
     tgacgaatta ttactagtag ttcccaaaac gttacaaact tcaataattc gacaagcaca      3300
     cgaacaagga catttcagcg ccaataaaac agaaacactt ttacgaaaag actactggtt      3360
     taagggaatg cggcaaaaaa tcaaaaaaat tgtaacaagt tgtataaatt gtattttagc      3420
     cgaacgaaaa caaggaaaac aagaaggttt cttaaatgta atcagcaaag gagatatacc      3480
     gttagatacg tatcatatag atcatctagg tccattaccg agcacaaaaa agagttaccg      3540
     taatattttt attatagtag atgcatttag taaatttgtg tggttgtatg ctacaaagtc      3600
     aaccgatacc gccaaagtac tcgatcgatt acgtaaacaa tcagtaatat ttggaaatcc      3660
     acgaaggata atatcagatc gtggtgtagc atttacagct agcgcattta aagattattg      3720
     ttccgaagaa aaaattcaac atttacttat aaccacagga atacctagag gtaacggaca      3780
     ggtcgaaaga ataaaccgta ctcttattcc tcttttaaca aaattatcag ctccgaagcc      3840
     agaagaatgg tttaaattcc tagataccgc tcaaaaatat ttaaatgcta cattaagtcg      3900
     aagtacaggt cgaacgccat ttcaattaat gtttggtact catatgcgtt taaaggaaaa      3960
     tccacaagtg cgcgaaatga ttgaaaatga atgggcgcga atgtatgaag aagagcgtga      4020
     tgatattcga cagcaagcga aagaaaaaat tgccgaaatt caacgagaaa acataaaaaa      4080
     ttataacaaa aaacgcaaaa aggcacaaac gtataaaacc ggagatctcg ttgcaattaa      4140
     gcgaactcaa ttaggtccag gacttaaatt tcgtggtaaa ttcttaggcc catatcacgt      4200
     aactaaagta atgcgtcatg atcgatatgt agttacgaaa ataggagatc atgaaggtcc      4260
     tacagaaacc tcaacatcag ctgattttat gaaaccttgg ttacgttacg ataatgagga      4320
     cacagaaagc gaaggagaat agctaaaatt aagattatat gcaattgtaa gcattcgagg      4380
     acgaatgcaa cgcaggacgg ccgaa                                            4405
//
ID   Gypsy-16_LH-LTR repbase;    DNA;    INV; 379 BP.
XX
AC   ADOQ01010831;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_LH_;
KW   Gypsy-16_LH-I; Gypsy-16_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-379
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01010831; Positions     420      42.
XX
SQ   Sequence 379 BP; 101 A; 71 C; 73 G; 134 T; 0 other;
     tgtaagggat ctattgatcc actgccgaca gatcgatccg ccgtctaatg ttttatttca        60
     tttatttctt ttatatttcc ggtcgcggcg tctatgactc ttttggcggc ccgcgacaaa       120
     taacgtcagt tttcttttta tgttttcgat cacagcgtct attgagataa ttataagtaa       180
     actcttttgg cggtccgcga caaacaatgt cggtgttctt ttatgttact actctttagg       240
     gtatatggta aaagtgcgta gagaaacgag cgaatagtca gtctcgagcg aacttctata       300
     cgaaaaagta cacggcgatt agttgtactc tatattgtta actgtactct atattattaa       360
     ataaatgtat aatcctaca                                                    379
//
ID   Gypsy-16_LMi-I repbase;    DNA;    INV; 4516 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4516
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           457..903
FT                 /product="Gypsy-16_LMi-I_1p"
FT                 /translation="MCRLLSSYYRPRTHVIAARVEFYRSRKKPNQSYRAWA
FT                 AELHGLSRHCLFVTATHKESYADDMVRDAILRLTPDREVRQWALQFDNPTL
FT                 ADILNIAQSFEVSRATGDQIEAWGTLAAISDTEEWRSFGDGDDVAAVQDRP
FT                 TRHAPPATTG"
FT   CDS           join(839..1093,1011..1250,1207..2250,2043..4502)
FT                 /product="Gypsy-16_LMi-I_2p"
FT                 /translation="MVMTSRQCRIAPLATRRQPPQGKQRQRSAPRGQANSL
FT                 PSCQYCFIDHDRASCPRHWVTCNKCRKKRAYGFGMPFTAVFYRYGHGDRAT
FT                 NAEKKGHMASVCRSQQSSTDMDMEINLVQGLQSSPSKLLVEVLIFDKSVRL
FT                 QVDTGASVSLLNFHTYTWLGSPPLSPTSTPIRGWGHPHYLHSHQRIPVVGQ
FT                 FTAPTAYKSVVRSITFLVVDDTAAVNIFGLDAFTSFGFTISDSVNLVSETV
FT                 PFQELESLCQEFSSLFSGGLGCATGFTAHITMKPTAQPRFFRARQVPVALR
FT                 NQLKAELDRLQSLQVLCPISSSEWAMPLVIVKKPSGSLRICGDFKVSINAQ
FT                 SVIDSYPLPRTDELLALLSGSQAFSQVDLAEAYLQLPLDEDSKCLLVVNTP
FT                 FGLYQYQRLPFGVASAPAIFQRFLEQLLRPVPGCVNYLDDIVVTGATTAEH
FT                 LRNLRALFQVLQATGLRCNLAKSRFFSSHRSPTSGSRSRRRGFAPCRIAWQ
FT                 PLLLCRTPRPPRICRCFASSQPAGPFSSLTGHWTPLQSGKVSFFFQPSIPY
FT                 LGFEISSAGVRPLPDRVAAVTSLPHPASAKDLQVFLGKIAYYHRFLPGAAT
FT                 IAQPLHRLLHKGVPFRWSDDCERAFCQLKQLLVSAPCLAPYTPGQHLVLAT
FT                 DASQYGVRAVLAHKYSDGSERPIAYASKTLTQTQQRYSQVEKEALAIVYAL
FT                 KKFHVYLYGVKFHLITDHKPLVSLFRPTAALPDKAAHRLQCWALFLSRYNY
FT                 EIHFRPTTQHSNADALSRLPCGPDPDFDREELLCFYLDDEAKATVEGFPIT
FT                 SSELSAAVSSDPVLRTVLGYVRHGWPDLPPRRASDPLRNYYSFRWRLSECE
FT                 GVLLLATEDRQPRVVVPSALCSRVLSLLHEGHWGASRTKTLARRHVFWPGM
FT                 DGDITRLVAACSSCASQQAAPWVSLSPWPRPNAPWECIHVDYAGPFLHSYW
FT                 FFVIDAYSNFPYVVHCHTMSTAMTTQSLSKVFAIEGLPRILVLDNGPQFTS
FT                 TAFRDFCAQLGVRHVPTPPFHPQSNGEAERLVRTFKVQMRKYVESSSVDEA
FT                 LLRFLSSYRFTLVGDHSPAELLHGRQLRTLLHLLLPQARAPSARPPNRYSR
FT                 APPSGRRGSAAAPTGCRVSSSLPGPSRLFRPHAGGVVQHWDQLRPRAPAEP
FT                 PPPPRTPSLQLCHHSSLLILCRRPLRRLLRPGGPCPVPCMGPPACQTGQRR
FT                 PPWCTLYAFGMPATSGGTSTPGCRGEAQHSTGRLHGDPRAGPIIRDGGSAL
FT                 SDIGHSYAPSSPIIAGCIPLRTGRLRPPRPNQYRPYSHVPARRLTDDSNAA
FT                 TTEEISMDVAWLRSAPIDISP"
XX
SQ   Sequence 4516 BP; 815 A; 1381 C; 1162 G; 1158 T; 0 other;
     ttggcgacga ggtgcatcga atttacgcgt gtttcttgct ggctacgcgg gctacagttt        60
     cccggccatg cctgccgacg gggacttgca actccctcct tgggcgcaat ttctggctga       120
     ttcccttcaa aatctggtca caatcacgac gtctctcgca gaacattgct actccgctcc       180
     gtcgggttct aatgcgtcgg cttcgccggt tggcgcgtcg tcgtcgctcc tactcagagc       240
     gttgtttctt ttccgccgcc gttctcggca tttgacgaca gcctggaaga ttgggattca       300
     tatgaaaagt gcttacgcca acatttcatc gccttcggtg tgtcggatct ggcgttgtgt       360
     aaagctttgt ttctctcttg gatatcacca cgtatctatc agttgttggg tcaacttgcc       420
     cccctgcagg aacccgcggc attatccttt gatgacatgt gccgtctcct gtcttcatac       480
     tatcggcctc ggacacatgt catagcggcc agggtcgagt tctatcggtc acgaaaaaaa       540
     ccaaaccagt cttaccgcgc ttgggcggca gagttacatg ggcttagccg ccattgcttg       600
     ttcgtcacgg ctacacacaa ggaatcctat gcagatgaca tggttcggga cgcaattctg       660
     cgtctcaccc cggacaggga ggtgcgtcag tgggctctgc agttcgacaa cccgacctta       720
     gcggacattc tcaatattgc tcagtccttt gaagtttccc gggccacggg ggaccaaatt       780
     gaagcctggg ggacgttagc tgcaatttcc gacacggagg aatggagatc gtttggggat       840
     ggtgatgacg tcgcggcagt gcaggatcgc cccactcgcc acgcgccgcc agccaccaca       900
     gggtaaacaa cggcagcggt ccgcaccacg tggtcaagct aattcactcc cctcctgcca       960
     gtactgtttc atcgatcatg acagggcatc ttgccctcga cactgggtaa cgtgcaacaa      1020
     atgccgaaaa aaaagggcat atggcttcgg tatgccgttc acagcagtct tctacagata      1080
     tggacatgga gattaacctc gtacaagggt tgcagtcttc tccctccaaa ttattggtcg      1140
     aggtgctaat ttttgacaaa tccgtgcgtt tacaagtgga cacgggggcc tcagtttctt      1200
     tgctaaactt ccacacctat acgtggctgg ggtcaccccc attatctcca tagtcaccaa      1260
     cgtattccgg tggtgggtca atttaccgcc cccacggcct acaaatctgt ggtgcgttca      1320
     atcaccttct tagtggtgga tgatacggcg gcagtaaata tttttggctt ggatgccttt      1380
     acttcttttg gctttactat ttctgattct gtcaatcttg tgtctgagac ggtgcctttt      1440
     caagagctgg aatccctttg tcaggaattt tcgtcgctct tttctggcgg attggggtgt      1500
     gctaccgggt ttacggccca tattacaatg aagcctacag cgcaaccaag attttttcgt      1560
     gcccgccagg ttcccgtggc cttgcgcaac caattgaaag ctgagctgga ccgccttcaa      1620
     tctctgcagg ttttgtgccc catttcttct agtgaatggg ccatgccact ggtcattgtt      1680
     aagaaaccct cgggctcctt acgaatctgc ggcgacttca aggtgtcaat taatgcgcag      1740
     tcggtgatcg actcctatcc tttgccccgc acagacgagt tgttggcgtt actgtcaggc      1800
     tcccaggctt tttctcaggt ggatttggcg gaggcgtacc ttcaacttcc tcttgatgag      1860
     gactccaaat gcctgttggt tgttaacacg ccttttggcc tttaccagta ccagcggtta      1920
     ccattcggcg tagccagtgc gccagcgatc ttccaacgtt tcctggagca acttctgcgc      1980
     cccgttccag gctgtgtaaa ttaccttgat gacatagtgg tcacgggggc cactaccgct      2040
     gagcatcttc gcaacctgcg ggcccttttt caagtcttac aggccactgg actccgctgc      2100
     aatctggcaa agtctcgttt tttttccagc catcgatccc ctacctcggg ttcgagatct      2160
     cgtcggcggg ggttcgcccc ttgccggatc gcgtggcagc cgttacttct ttgccgcacc      2220
     ccgcgtccgc caaggatttg caggtgtttt taggcaagat cgcctactac caccgttttc      2280
     tgccgggtgc agctactatt gcgcagcccc ttcaccgcct gctccataag ggtgtaccct      2340
     ttcggtggtc agacgactgc gaacgtgcat tttgtcagct caagcagctt ctagtgtcgg      2400
     ctccttgctt ggccccctac actccgggac agcacctggt cctcgctacc gacgcgtccc      2460
     aatacggcgt cagagcagtg ctagcacaca agtactcgga tggttctgaa cgccccatcg      2520
     catatgcttc taaaacgttg actcagactc agcaacgcta ttctcaagtt gaaaaagagg      2580
     cgttggctat tgtttacgct cttaaaaagt ttcatgtgta cctctacggt gtcaagttcc      2640
     acctcatcac ggaccacaag ccgttggtct cgctttttcg gcctaccgcg gcattgccgg      2700
     ataaggctgc gcatcgtctt cagtgctggg cactcttctt gtcccgatac aattatgaaa      2760
     ttcatttccg gcccaccacc cagcattcca atgctgacgc gctgtcgcgc ctcccctgtg      2820
     gtccggaccc ggattttgat cgggaagagc ttctctgttt ttatttggat gacgaagcaa      2880
     aggctacggt cgaggggttc cctatcacgt cttccgaatt atcggcggct gtctcttccg      2940
     atccagtgct gcgcacggtc ttgggatacg ttcgtcatgg ctggccagat cttcccccgc      3000
     gccgggcttc agatcccctg cggaattatt attcttttcg atggcgcttg tccgaatgcg      3060
     agggggttct cttattggct accgaggatc gccagcctcg cgtggtcgtg ccttctgccc      3120
     tatgctcaag agtcctgtcg ttgctgcatg agggacactg gggggcctcg cgcaccaaaa      3180
     ctttggctcg gcggcacgtg ttttggccag gtatggacgg ggatatcaca cgcttggtgg      3240
     cggcttgttc gtcttgcgcc tctcagcagg cagctccgtg ggtgtccctt tccccttggc      3300
     ctcggccaaa cgcgccttgg gagtgcatcc atgtggatta tgctggtccc tttctccact      3360
     cttattggtt ttttgtaatc gatgcatact cgaactttcc ttatgtcgta cactgccata      3420
     cgatgtctac ggccatgacc actcagtccc tttccaaagt gtttgctatt gaaggcctac      3480
     cacgtatctt ggttttggat aacggacctc aatttacctc tacggctttt cgggattttt      3540
     gtgctcagtt gggggtccgc catgtcccga ccccaccctt ccacccccag tccaatggcg      3600
     aggcggaacg gttggtccgc acattcaaag tccaaatgcg caaatatgtt gaatcttctt      3660
     cggtggacga ggctctcctc cggttcctct cttcgtaccg gttcactctg gtgggtgatc      3720
     acagccccgc agaactcttg cacggccgcc aactgcgcac attactccat ctcctcttgc      3780
     cacaagcccg ggcaccctct gcacggccgc caaaccgtta ctcccgggct ccaccgtccg      3840
     ggcgcagggg ttcggctgca gcccccactg gctgccgggt atcatcaagc ctgccagggc      3900
     cgtcgcgtct gttccgtccg cacgccgggg gtgtggtaca acactgggat cagttacgcc      3960
     cccgggcccc ggccgagcca cctccacctc cacggactcc atcacttcaa ctctgccatc      4020
     attcgtcgct gctcatcctt tgccggcgac cccttcgacg cctcctccgg ccggggggtc      4080
     cgtgtccggt accctgcatg gggccccctg cctgccagac ggggcagcgt cgccctccct      4140
     ggtgcaccct ctacgccttc gggatgcctg cgaccagcgg gggcacctcc acaccgggat      4200
     gcaggggtga ggcccagcac agtacaggcc ggctccacgg tgacccaagg gccggcccca      4260
     tcatcagaga tgggggctcc gccctctccg atattggaca ctcctacgcc ccaagctcgc      4320
     ccatcattgc tggctgtatc ccactgcgga cgggccgcct tcgtccgccg cgtcccaatc      4380
     agtatcggcc gtacagccat gtgccagctc gccggctcac cgatgactcc aatgcagcta      4440
     ctactgagga aatatcgatg gacgtcgcct ggctacgttc ggcgcccatc gacatctccc      4500
     cctgaggggg gaggag                                                      4516
//
ID   Gypsy-16_LMi-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-234
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 234 BP; 44 A; 68 C; 74 G; 48 T; 0 other;
     tgttgtaatg ttgcggcata cgacactcca aataacgcgc gccgcgacct atgtgtgcgc        60
     cgccggccgc gaggcagcgg cactggtggc agccggcacg ccacctagcg accgccggta       120
     cctggacaga cgaggccgct ctccactcgg gcagttgctg tttatcaccg taagtggtgg       180
     ttcacagcgt cagtagagta ccgggtctag ttgttgtgtg tgaccgttag aaca             234
//
ID   Gypsy-16_MeUr-I repbase;    DNA;    INV; 4253 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4253
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3050-3050 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           629..4153
FT                 /product="Gypsy-16_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPNHYQPXKEQSFGKEINYLMKKYVLXLEKXAAKCQF
FT                 KDVDDQVXEKFMDGVSSKLIKFELMKSQVEMSLEKCIEIGRTVEAALLHAN
FT                 GSNEXTESIFFYQXXPRNTGTRPKYKQNNNSKQNNMKCFCCGKDXXVKADC
FT                 RLIKKFCSECGLQGHIFKMCLEKRQINTLXXQQPENTEEPENVIQNXXQEE
FT                 YKTYSISVSRIPPHYITLNVCGFXLKFLLDTGSDVTVMSXNDKNMYSNSLK
FT                 MQDSNVLFRNFDQSIAKPLGIVTNXTVKYNEVIKTXNIFVVKNYAPRVIGR
FT                 DWLNELNLWPPKXSNSFEIGTNLIQXXSDAQQLXSEFAEVFSPGWGNFKGE
FT                 XISLKLKPDAKPRCXPVRRVXFALREKVNNEITRLXNNGRITEVEQSEWGT
FT                 PVXPXLKPDGSVRLCGDYKLTVNPCXEIDHXPLPXLDDILNTLKQGEYYCE
FT                 LDLKEAYLQAPLXXESKNCTTIVTEAGTFKYNYLPYGVSSGPGAFQRLMMR
FT                 KLNKIPNTIVFIDNIYIKGQDVQDTYNTLNLVLKKLQESEFKLKLEKCKFF
FT                 TTSLEVFGFRVNKNGISVIQSNIEPLLNAKTPNSMTLLKSFLGKINYYARF
FT                 LKNMATVLTPLYECTKGNKFSWTLECERAFHIIKRKLASAGNLRHYDPKLA
FT                 LILTCDASETGLGAVLSNREKNGVVKPIAFASKKLNKVEQKYTTIDKEALA
FT                 VVFGITKFYNYIYGRCFELETDNAALVRIFGPKKSIPRMAAKRLQHYAIFL
FT                 SAFNYKVRHIKSSENPADFLSRIVENESEKLEIHSLCATANSSLVCYTNES
FT                 QMETLNWKRIQIESKKDVVFSKVIRYLIDG*PEKKELDSEILPLYNRKTEL
FT                 TLDRQCIFWGYRILVPQSIRKAVLTELHKSHFGIVRMKEMARSYFWWPSLD
FT                 LDIDKITKECLICLQNSKAPAQTQKPWPVPPSSWYRIHADFLGPFYNKMFL
FT                 VIVDSYSKWPEVYEMTNITSNRTIDVFKSLFTRFGYPVHLVTDNGRTFTSQ
FT                 EFFNFCKSNQIKHTFTPPYHPATNGAAERFVETFKSAITKIRESGHSLISA
FT                 VNLFLFDYRSTPQRTTGVSPARLMLGREIRNRFSLLRPPPISDIVQEKVGK
FT                 REEGNRQLNFELGQKVMVRDYRKDGKPWIQGLIVGDSIPGVSYIIDVEGVK
FT                 WKRHVNQMMSCSQSLE"
XX
SQ   Sequence 4253 BP; 1548 A; 652 C; 837 G; 1152 T; 64 other;
     agtggcgacg asttaggatt gtgaaccwta agtgcagagc caaaactaaa cagtaaagaa        60
     gaaaaatata caamagtaat aaccgctacg gtgacccgat ctgtgcatca cgagggcggg       120
     ctagtagcag acaattgmgg aaggtaggga agatttcaat gttttcagat caatakatgt       180
     atatcatatc tacatgtcag ataccgaaaa ttcmwtcgag agtgccgatg aagaaaccgt       240
     agaaagcttc gacaaaatcg cacaaataaa ggcgggaaaa agaacattta tttacaagtg       300
     taccaagcaa ggcttacaac aaatagcaaw ggaggaaaaa awtcctgttg atccaaacgc       360
     amagttagag gkattaagga aagccatcag tgatttktac aaattkcaag msawaccmgt       420
     ctccaatttg agggagagaa gtgggagata ttcaaacaac aacctgagtg ttttatttta       480
     gtcaatgaca tcactgagga taaaaaggta ccgttgctaa taactwaact gkctccaaaa       540
     gtgtttgaga kattaacctg tttatgctca cmwctaaaac cattagaacw aaaatttgaa       600
     gagttgtgta ataaactsaa ggataaatat gccaaaccat tatcaacctt kkaaagagca       660
     gagtttcgga aaagaaatca attacctaat gaaaaagtat gtactgsaat tagaaaaatt       720
     wgcagcaaaa tgtcaattca aagatgtaga tgaccaggtc waagagaaat ttatggatgg       780
     cgtgtcctca aagttaatta aatttgagct gatgaaaagt caagttgaaa tgtcactgga       840
     aaaatgcatt gaaatwggaa gaacagtgga agcagcgctw ttacatgcaa atgggtcaaa       900
     cgaaktgacw gaaagtatat tcttttatca acwgamacca agaaatactg gaacaaggcc       960
     aaaatataaa cagaataata acagtaaaca gaataacatg aagtgttttt gctgtggaaa      1020
     agataawmat gtgaaagcag attgtcgttt aatcaaaaag ttttgtagcg agtgtggmct      1080
     acaggggcac atcttcaaga tgtgtttaga gaagcgccaa attaataccc tggawgmaca      1140
     gcaaccggag aatacagagg aaccagaaaa tgttatccaa aatktatstc aagaagagta      1200
     taaaacatac agcataagcg taagtaggat accgccacat tacataacac tcaatgtctg      1260
     cggcttcaam ctaaaatttc tgttggacac aggttcagat gtaacagtta tgtcawtaaa      1320
     cgacaaaaat atgtactcta actctttaaa aatgcaggat tctaatgttc tgtttagaaa      1380
     ctttgaccag agcatcgcaa agcctctggg tattgtaaca aatgkgactg ttaaatataa      1440
     tgaggtcatc aagacacwaa acatttttgt tgtaaaaaat tatgctccca gagtaattgg      1500
     tcgagattgg ttaaatgaat taaatctatg gcccccaaag ttsagtaaca gttttgagat      1560
     tggaactaat ttaatacaaa awktttcaga tgcacaacaa ctamtttccg agttcgcaga      1620
     agtattcagc ccgggttggg gaaatttcaa aggagaaatk atatcactaa aactaaaacc      1680
     ggatgccaag cctcgttgtw taccwgtaag gcgagtacmg tttgcactac gggaaaaggt      1740
     aaataatgaa atcactagac tatkaaataa tggtcgtatt actgaagtag aacaaagtga      1800
     atggggcact cccgtagwgc ctwttctgaa accagatggc tcagtaagat tatgcggkga      1860
     ctacaagttg actgtcaacc catgtstaga gattgatcat twcccactac camatttgga      1920
     tgacattttg aatactctca aacagggcga atattactgc gaattagatt taaaagaggc      1980
     ctacttacag gcacctctta ktgamgaaag taaaaattgt accactatag taacagaagc      2040
     tggaacattc aaatataact acttaccata tggtgttagt tctggcccag gagcctttca      2100
     acgtttaatg atgagaaaac ttaacaaaat tcctaataca attgtattca tagacaacat      2160
     ttatattaaa ggacaagatg tacaagacac ttacaataca ttgaatctgg ttttaaaaaa      2220
     gttacaagag agcgaattca aattaaagtt agagaaatgt aaatttttca caactagttt      2280
     agaggttttt ggatttcgtg taaacaaaaa tggtattagt gtaattcaat caaatattga      2340
     gccattgtta aatgcaaaaa ctccaaacag tatgacacta ctaaaatcat ttttgggtaa      2400
     aattaattac tacgctcgtt ttttaaaaaa tatggccaca gtgttaacac cactatatga      2460
     atgtacaaaa gggaataaat ttagttggac attagaatgt gagagagctt ttcatattat      2520
     taagagaaaa ttagcatcag caggcaactt acgacattat gatccaaaat tggcactaat      2580
     cttaacttgt gatgcttcag agacaggcct gggtgcagta ttgtcaaaca gagagaaaaa      2640
     tggtgtagtc aaaccaatag cttttgctag taagaaatta aataaggttg aacagaaata      2700
     tacaacaatt gacaaagaag cattggcggt tgtttttgga ataacgaaat tttataatta      2760
     catttatgga cggtgctttg aattagagac tgataatgca gctttagtgc gaatttttgg      2820
     cccgaaaaaa agtattccaa gaatggctgc taagagatta cagcattatg ccatatttct      2880
     ctctgcattt aattacaaag ttcgacatat taagtcatca gaaaacccag cagatttttt      2940
     gtctagaata gtagaaaatg agagtgaaaa attagaaata cattccttat gtgccacggc      3000
     aaattctagt ttagtttgtt atactaatga gtcacaaatg gaaacattaa attggaagag      3060
     aatacaaata gagtcaaaaa aagatgtagt attttcaaaa gttattagat atttaataga      3120
     tggttagcca gaaaaaaaag aactagatag cgaaatatta ccattgtata ataggaaaac      3180
     wgaactcact ttagatagac aatgtatatt ttggggctat cgtatattag tgccacaatc      3240
     gattaggaaa gcagttttga ctgaattaca taaaagtcat tttggtatag tccgaatgaa      3300
     agaaatggcg cggtcctact tttggtggcc ttcgctagac ttagatattg ataaaataac      3360
     gaaagaatgt ttgatatgtt tacaaaacag taaagctcct gcacaaaccc agaaaccatg      3420
     gcctgtaccc ccatcttctt ggtataggat acatgctgat tttttgggcc ccttttataa      3480
     caagatgttc cttgtaatag tagatagtta ctcgaaatgg cccgaggtgt atgaaatgac      3540
     caatattact agtaaccgca caatagatgt ttttaaaagc ttatttactc ggtttggtta      3600
     tcccgttcat ctagttactg ataatggtcg cacatttact agtcaagaat tttttaattt      3660
     ctgtaaatca aatcaaatta aacatacatt tacaccaccc taccacccgg caaccaacgg      3720
     cgcggcggaa agatttgttg aaacatttaa atcagctata actaaaataa gagaaagtgg      3780
     tcatagtttg atctcagccg taaatttgtt tttgtttgat tatagaagca cacctcaacg      3840
     tacaactgga gtgtcaccag ctcggttaat gttaggtagg gagattagga acaggtttag      3900
     tctattgcga ccaccaccca tatctgatat agtgcaggag aaagtgggga agagagagga      3960
     aggaaacaga caactaaatt ttgaactggg acagaaagtt atggttagag attacaggaa      4020
     ggacggcaag ccatggattc aaggtttgat agtaggagac tccataccag gggtaagtta      4080
     catcatcgat gtagaaggtg taaaatggaa acgtcatgtg aatcaaatga tgtcttgctc      4140
     acagtcatta gaatagttat aggcagtagg ttaaggttct acgtagagat actttatatt      4200
     aataagttat gttgattcac gctcagggtt atttataata gattggggga gag             4253
//
ID   Gypsy-16_MeUr-LTR repbase;    DNA;    INV; 149 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-149
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3031-3031 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 149 BP; 42 A; 22 C; 30 G; 55 T; 0 other;
     tatgggatat ggaacgcaac cacagacgtc agttttgacg ttttgcgtgt gtcattgttt        60
     ttgactactc tgtgtccagt ggattgttac ctcgcgttta aataaagtac taattaatgt       120
     aatttagtgg ttttattaaa aatacaaca                                         149
//
ID   Gypsy-16_MoPha-I repbase;    DNA;    INV; 4450 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4450
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1096-1096 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..4412
FT                 /product="Gypsy-16_MoPha-I_1p"
FT                 /note="SAP domain, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSTRNLSDFTVNQLKEKLRELNLPLTGNKNDLVARLA
FT                 EADPSGPWTEEASDTLEDGEAIRGGPNEASAGALSRHEREIELYRREKELA
FT                 ELELQLLRRELELARGMRQLNIGERSQAADRENVSRDYPRPSITAIADLLS
FT                 FFDGSGDYETWEKQFRLLRATYRLNDEYARLLVGMRLKGKASEWLHSKPQH
FT                 IELPVETLVSEMREMYDHRPSKMTLRKQFEERVWKKEETFQQYVHDKIILA
FT                 NRVPISEEEIIDYLIDGIPAANLRDQARMSRFSSKAELIQAFEKVMLRDRT
FT                 QTNSVKKNEQQKGDGDKRQHGGGRAERRNASKDETVRRCYNCGLRDHMSAD
FT                 CPTKSEGPKCFQCGERGHVASKCEEQKKAVRAIHANARAKRYTKEVELNGN
FT                 RVLALIDTGSDFCLLRSDKYIQLDFPKLESKEIRFRGIGSSDNTTLGEFNA
FT                 NLTVDGSTYSILVRVVSDALLKHELIIGADFLNTIEMTARAGEIVIRQVSE
FT                 SSCVDEEIPEIFQIDIDSVENGETDVSHIPEVEYRNRIQKAVANYTPNKSR
FT                 DVDLKMSIVLKDEVPVYQRARRLSASERELVNAQISEWIRDGIAQPSLSEY
FT                 ASPVVLVKKKDNSVRLCVDYRLLNKKIIKDRYPLPLIEDQLDSLQNARVFS
FT                 TLDLKNGFFHVPIDVQSRKYTAFIVPDGHYEFLRVPFGLCNSPAVFQRFIN
FT                 IVFRDLIQTKVVLTYLDDLIIPSVDYESGATNLEIVLKVASEAGLIINWRK
FT                 SSFLKRRVEFLGHVIENGKVYPSGQKVEAVRKFPVPSNVKQMQSFLGLSGY
FT                 FRKFIPRYSTIARPLSDLLKTNVKYVFGEKENAAFIQLKEMLVSKPVLNLY
FT                 VTGAETELHTDASMFGYGAILLQKSADDNMFHPVYYSSGKTTPAEQNYSSY
FT                 ELEVLAIIKALKKFRVYLIGARFTIVTDCRAFVATMNKKDLCVRVARWALL
FT                 LEEYNYKVEHRPGKNMSHVDALSRNPIAECHVVVEQENGITARLIKAQAND
FT                 SDVKKVFDQAKSGRSSDYVVRGDLLFKEINGNLCVVVPKAMQMQIIRQAHE
FT                 RGHFSVAKTKALLRNDYWIPNIETKIEKVIKNCIACILAERKQGKQEGFLN
FT                 PIAKGEVPLDTYHIDHLGPLPSTKKNYKYIFVIIDAFSKFVWLYSTKTTNT
FT                 SEVLDKLIKQSFIFGNPRRIISDRGTAFTSKEFSEYCKKEDIEHVLITVGI
FT                 PRSNGQAERVNRILIPLLTKLANPRREEWHKYLAFAQQCINTTLSRSIGTD
FT                 PFHLLFGVHARLRGDLEIRELLEKEYIEAYRDERDQLRESAKENIAKIQRD
FT                 NKRTFNKNRVAATKYREGDLVAIKRTQQGPGLKFANKYFGPYRIIQVLRNN
FT                 RYVVQREGEHEGPLKTSTAADYMKPWISNETDYNSDEDSSED"
XX
SQ   Sequence 4450 BP; 1432 A; 816 C; 1128 G; 1074 T; 0 other;
     aattgggggc tcgtccggga ttgagcgaac gagaaactga gtaagagaga cggagtgaaa        60
     gtgaccgcag gagcagagtg agaacaacga ggcaataagc gaattttgtt tgagcgaaga       120
     tatagtgagg catactttgc aaatctatca ctagttgtgg gtagttgtga gagcgaataa       180
     acttattgtg tgtgaagatg agtaccagga atctatcaga ttttacagtg aatcagttga       240
     aagaaaaatt gcgagaattg aatcttccct tgaccggaaa taaaaacgac ttagttgcgc       300
     gattagccga ggcagatcct tcgggtccgt ggacagagga agcttctgat acattggagg       360
     atggtgaagc gattcgagga ggcccgaacg aagctagcgc gggggcattg tcccgtcacg       420
     agcgagagat cgagttatac cgtcgcgaga aagagttagc ggaactagag ttgcagttgt       480
     tgcggaggga gctagagtta gccagaggga tgcggcaatt aaacatcgga gagcgtagtc       540
     aggcggcgga tcgagagaat gtttcacgtg attatccgag acccagtata acggccatcg       600
     ccgacctcct cagttttttc gacggcagcg gtgactacga gacgtgggag aagcaattca       660
     ggttgctgag agcaacgtat cgcttgaacg acgagtacgc gagacttttg gtgggcatgc       720
     ggctaaaggg aaaagcgtca gaatggctgc attccaagcc ccaacacatt gaactgccag       780
     tagaaacttt agtgagcgag atgcgagaaa tgtacgatca tcgcccaagt aaaatgacgc       840
     tacgaaagca atttgaggaa cgcgtgtgga aaaaggaaga aacgttccag cagtacgttc       900
     acgataaaat aattttagcc aatcgtgtgc caattagcga agaggaaatt atagactatc       960
     ttatcgacgg aataccagcg gcaaacttga gagaccaagc acgaatgagc agattctcct      1020
     cgaaagcaga gctaatacaa gcttttgaga aagtgatgct tcgtgatcga acacagacaa      1080
     atagcgtgaa gaagaacgag cagcagaaag gcgacggaga taagcggcaa cacggaggag      1140
     gaagagcgga gaggaggaac gcgtcgaagg atgaaacagt gagacgctgc tacaactgcg      1200
     gactgcgtga ccacatgagt gcagactgcc cgacgaaatc ggaagggccg aaatgttttc      1260
     agtgcggcga acgcggacat gttgcatcaa agtgtgagga gcaaaagaaa gcggtgagag      1320
     ctatccatgc taacgcgcgt gcgaagagat atactaaaga agtagaactt aacggtaata      1380
     gagttctggc tcttatcgat acagggagcg atttttgtct attgcgatcc gataaatata      1440
     tacaattaga ttttccaaaa ttagaatcga aagaaattcg cttccgcggc atcgggtcga      1500
     gcgataatac gactttaggt gaattcaatg cgaacttaac ggtagacgga agtacatatt      1560
     ccattctcgt gcgcgtagtg tcggatgctc ttttgaaaca cgagctaatt atcggtgcgg      1620
     actttctaaa cacgatcgag atgacggcgc gagcgggtga gattgtcatt cggcaggtat      1680
     cagaatcttc gtgcgtcgat gaggagatac ctgaaatttt tcaaatcgat atagattctg      1740
     tggagaatgg cgagacagac gtgtcacata taccggaagt agaatataga aatagaattc      1800
     agaaagcagt cgctaattac actccgaata aatcgcgaga tgtagatctg aaaatgtcca      1860
     tagttcttaa agacgaagta cccgtgtatc agcgagctag gcgattatcg gcgtcggaga      1920
     gagaattagt taacgcacaa ataagcgagt ggatacgcga tggtatcgcg cagccttcat      1980
     tatcagagta cgcgagtccg gtagtgctgg taaaaaagaa agataattca gttaggctat      2040
     gcgttgacta ccgtctctta aataaaaaga ttattaaaga tcgatatcct ttaccactca      2100
     tagaagatca gctagattct ttacaaaacg caagggtttt tagtactctt gatttaaaaa      2160
     acggattttt ccacgttccg attgatgtac agagccgaaa gtacacagcc tttatagtgc      2220
     cggacggcca ctatgagttt ttgcgcgttc cgttcggtct atgcaactca ccggcagtat      2280
     ttcagcgttt cattaatatt gtatttcgag atttaattca aaccaaagta gtattaacat      2340
     acttggatga tttaataatt ccatctgtag attatgagag tggcgcgact aatctcgaaa      2400
     ttgtattaaa agttgcgagt gaagccgggc tgataataaa ctggcgaaaa tctagcttcc      2460
     taaagcgtcg tgtcgaattt ttaggccatg ttattgagaa cggtaaagta tatccttccg      2520
     ggcaaaaagt agaagcggtg cgaaaatttc ctgtaccgtc taatgtaaaa caaatgcaga      2580
     gcttcctagg attaagcgga tattttagga aatttatacc acgatactcc accattgcgc      2640
     gacctttgag tgacttatta aaaacaaatg ttaaatatgt atttggcgaa aaggagaatg      2700
     cagcgtttat acaactaaaa gaaatgttag ttagtaagcc ggtgttgaat ctgtacgtga      2760
     caggcgcaga aaccgagctg catacggacg cgtcgatgtt cggatacggt gcgatacttt      2820
     tacagaaaag cgcagatgat aatatgtttc atccggttta ctatagtagc ggcaaaacta      2880
     caccagccga acaaaattat tcaagttacg agttagaggt actagcaata attaaagccc      2940
     ttaagaaatt ccgagtttat ttgataggcg ctcgttttac aattgtaacg gattgtcgcg      3000
     cgtttgttgc aactatgaat aagaaggact tgtgtgtgcg tgttgcgcgt tgggcgttat      3060
     tactcgaaga gtataattat aaagtagagc atcgtccagg caaaaatatg agtcatgtgg      3120
     atgcgttaag tcgcaatcca atcgcggagt gtcatgtcgt cgtggaacag gagaatggaa      3180
     ttacggcgcg attaataaaa gcacaggcaa acgacagcga cgtaaagaaa gtatttgacc      3240
     aagcgaaatc gggacgctcg agtgactatg ttgttagagg cgacttactc tttaaagaaa      3300
     ttaacggtaa tctgtgtgta gtagtgccga aagcgatgca gatgcaaatc atacggcaag      3360
     cacatgagag aggacacttt tccgtagcaa agacaaaagc gcttttacgt aacgattact      3420
     ggattccgaa tatagaaact aagatagaga aggttattaa aaattgtatt gcgtgtatcc      3480
     ttgctgaaag gaagcagggc aagcaggagg gatttcttaa tccaatagcg aagggggagg      3540
     tcccgttgga tacataccat atcgatcatt taggcccgct tccttccacc aagaaaaact      3600
     ataaatatat atttgtaatt atagacgcgt tttcgaaatt tgtgtggctc tactcgacaa      3660
     agactactaa cacgagcgaa gttttagaca aactaattaa acagtcgttt atctttggta      3720
     atccgcgaag aataatttcc gatcgtggaa cagccttcac ttccaaagag ttttctgaat      3780
     attgtaaaaa agaggatatc gaacacgtgt tgattacggt tggaatacct agatctaatg      3840
     gtcaggccga gcgtgtaaac cgtatactga taccgctgtt aactaaactt gcgaatccga      3900
     ggcgtgaaga atggcataaa tacctagcgt ttgcacaaca atgtattaat actacactaa      3960
     gtagaagcat aggtaccgat ccatttcatt tgttatttgg cgtacatgcg cggctgcgag      4020
     gcgatctcga aattcgagaa ttattagaaa aagaatacat cgaagcatat cgggatgaac      4080
     gcgatcaact aagggaatca gcaaaagaaa acattgccaa aatccagcgt gataacaagc      4140
     gtacctttaa taaaaataga gtagctgcga cgaaataccg agagggcgat ttagtggcga      4200
     ttaaacgcac acaacaggga ccgggtttga aattcgcaaa taaatatttc ggaccctatc      4260
     gaattattca agtcctgcgt aacaaccgct atgtagtaca acgcgagggg gaacatgagg      4320
     gaccccttaa aacttcgacc gcagcagatt atatgaaacc atggatatct aatgaaactg      4380
     attataatag cgatgaagac agctcagaag actgatatcc ggggcggata tccagagcag      4440
     gatggccgag                                                             4450
//
ID   Gypsy-16_MoPha-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-331
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1180-1180 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 331 BP; 80 A; 75 C; 91 G; 85 T; 0 other;
     tgtggagccg ggcgcgggac aagcccgatc gtaaaaagtt tttccgacgc taacacgacg        60
     ggtcagtacg gcgatcgcga ggtcagatgc attttttttt atgcgtctct tttttttttt       120
     gcctgcgagt ggacatgcga tggcgcccgc ggagctggac tcgcgagcct ggtgacaaga       180
     aaaaaaaagg acagtcagtc tttgcgagcg atccatgcga atagcatcga acggtcagtc       240
     cttgcgagaa agccctgcag gtcacatcct tccgagtgta ataaaggaaa cttacatttt       300
     aactgagtgt gtgcgtattt gatttcctac a                                      331
//
ID   Gypsy-16_MSe-I repbase;    DNA;    INV; 4533 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4533
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 893-893 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..4489
FT                 /product="Gypsy-16_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPKRHGKQDDSPAVDTDDEQQSNEPVMTITESMLQA
FT                 LVAGITRSQAEANRQLMQELFSNRDQFQTPSTPTPPPDSHAANGNFAKCTA
FT                 RFDGSTKNADVLEAFIDAIVVYKECTNVSDEHAVKGLPILLTGEAAIWWQG
FT                 VKASVSSWEDALRRLRGSFGVPRPAHKIFRDIFASEQQNERADAFISKVRA
FT                 LLAKLPYEVPQQMCVDIVYGLLSRKIRKRVSRDDVNGLEQLVAKARLVEES
FT                 LAEVSAYPSNSNVQESLPCTPDLPTTSHGIGSNSVVSRSVGPAHVSVNPSK
FT                 VTGTLINPPVTVAGNMGTDFSKSNDYKRSRPRCSYCKLFGHTVDECRKIKY
FT                 SRSDVKTQLHCYGCGQLGVVRSKCPKCKNVQSGNNSEFQSVHVNELKDAQP
FT                 LVPVLIAGRQGIAMLDTGATHSIAGPMLHRIFVNAGVEFKRILLTFSLADG
FT                 SQQIRTVHEYNTIVTLMGRDVPTTFVVLPEAETRTLLGRDFIRKAKILLDL
FT                 PQNKWSFSDCTRRRYPFAAHHELPACDEPTLMKMDVSKLMLREDEGTSLTE
FT                 DQRTRLNELLINRADRFAKQGSPTDYALHRIKVDTRQEPIASPPYRMAPSK
FT                 RELLERELQKLLDGDIIEECESPWAANVVLVTKKDGGVRLCVDYRKLNAVT
FT                 EPDRYPLPRIEDVLHAAKNTSYMTTCDLRSGYYQIAVEPEDRDKTAFVTPL
FT                 GTFRFKRMPMGLRNSGSTFQRLMDRFKASKELSNTCLLTYLDDVIILSESF
FT                 PQHIQDLNAVFDRLETFNLRINREKSCFARESVKFLGHVIVPGGIKADPDK
FT                 TAAISTMPPPKNVKQLKTFLQTSSWFRRFIPNYAEVARPMTNLLKKDSKWT
FT                 WLPIQQEAFDHIKQLLVSAPILRQADESKPFTLRTDSSGYCLGAVLMQGEG
FT                 TDERPVEYASRLLNSAEKNYNTTEREALAVVWAVTKFRGYIEGSEVLIKSD
FT                 HQPLRWLMTVKSPSGRLARWALTLQAYNLRIEYTPGKANAIADTLSRPPCD
FT                 DEADCDIRYAEVDLPSRDPKEVRENQVKDLEVREIIEDLESTHDPFRGRVW
FT                 SDRGFIISDGILYRYASDDSDEDTACLVVPEHERAKILAEYHDAPTAGHFG
FT                 VERTLARIRAKYYWPGMRQSIATHIKKCVECQRYKADNRKPAGLLQTPAPN
FT                 RRFEVVAVDLFGPLPATPNGKKWILIVEDTCSRWIELFALEKATSTECAKV
FT                 LVEEVFLRYGVPRRVISDNGVQFISETMQQVCHSFGISQSLTPKYHPQANP
FT                 VERKNRDLKPQLAILVGKDHRNWDVHLSAIRFAMNSAVTCSTGHSPGFLTF
FT                 GREMRAPADVITDMRHIVENDNAVTSLTPYLRHLSTVLYEAREVHEKAQAS
FT                 QKRHADEGRRPAPEYAPGDYVLLKTQGSNDALRGQTPKFIPRRDGPYRVKN
FT                 IASPTTYVLERISSGEVLGRYHVSQLTPYVGDIQPPVNEKRKRGRPRKY"
XX
SQ   Sequence 4533 BP; 1242 A; 1097 C; 1191 G; 1003 T; 0 other;
     gtgacgccca acttgcgggc acaaccattt tgtaaattcg ggcgagtcca tttttcgact        60
     tcaagttttc gtcgtcaagc gagccccggc aacggatatt atgccgccta aacgacacgg       120
     gaaacaggac gactccccag cggttgacac agatgatgag cagcaaagta atgaaccggt       180
     aatgacaatt actgagagta tgctgcaagc gcttgtcgcc ggcatcacgc gcagtcaagc       240
     agaagcgaat cgacagctta tgcaggagct cttctcgaac agagaccagt ttcagacacc       300
     gagtacaccg acccctccgc cggactcaca cgccgcgaac ggaaatttcg cgaagtgcac       360
     ggcgcgcttc gacgggtcga cgaaaaatgc ggatgttctt gaagcattca tagatgcgat       420
     tgtggtgtac aaagaatgca ctaacgtgag tgatgaacat gcggtcaagg gtctgccgat       480
     actgctgacg ggcgaggccg ctatatggtg gcaaggagtt aaggcgtccg tatcatcgtg       540
     ggaggatgcc ctgcgacgac ttcgaggatc gttcggtgtg ccgcgacccg cgcataaaat       600
     ttttagagac attttcgcga gtgagcaaca aaacgaacgt gccgacgcgt ttatatcaaa       660
     agtgcgtgcg ttattggcaa aactgccata cgaagtgcca caacaaatgt gtgtagatat       720
     agtgtatgga ctgttaagta ggaaaatacg caaaagagtg tcacgcgacg acgtgaacgg       780
     gctcgagcag cttgtcgcta aggccaggtt agtcgaagag tcgctggcgg aggtaagtgc       840
     ttatccttcc aattccaacg tccaggaatc cttgccatgt accccagacc ttcctacaac       900
     ctcgcatggc attggttcga atagtgttgt aagccggagt gtcggtcccg cgcacgtgag       960
     tgttaaccct tcaaaggtca cgggtacctt aattaaccct ccagtaaccg ttgccggtaa      1020
     tatgggcacc gattttagta aaagtaacga ttacaaacgc tcgcgaccta ggtgtagtta      1080
     ttgtaaattg tttggacaca ccgtcgacga gtgtcggaaa attaagtata gccgttcaga      1140
     cgtaaaaaca cagttgcact gctacgggtg tggtcaactg ggcgtagtac gttcaaaatg      1200
     ccctaagtgt aaaaatgtgc aaagtggtaa taattcggaa ttccagagtg tacacgtaaa      1260
     cgagttgaaa gacgcgcaac ctttagtccc ggttctcatt gccggccgtc aaggaatcgc      1320
     gatgttagat acgggagcca cgcattcgat cgcaggtcct atgttgcatc gaatctttgt      1380
     taatgcaggt gtcgaattca agcgcatatt acttacgttt agccttgccg acggttcaca      1440
     acaaattcgt accgtgcacg aatataacac tattgttacc ttgatgggcc gcgacgtacc      1500
     tacaactttt gtagtgctcc ccgaggcgga gacgcgtacc ctattgggaa gagattttat      1560
     aaggaaggcc aagattctgt tggatttacc acagaataag tggagtttta gtgattgcac      1620
     acgacgtcga tatccatttg ctgcccatca cgaattaccc gcttgcgatg aaccgacgtt      1680
     gatgaagatg gatgtgtcga aacttatgtt gagagaagac gagggtacca gcctaaccga      1740
     ggatcagagg acccgattaa acgagcttct tataaacaga gccgatagat ttgcgaaaca      1800
     agggtctccg acggactacg ctttgcaccg cataaaagtc gacacgcggc aagaaccgat      1860
     cgcctcaccc ccttaccgga tggcaccaag caagagagag ctcttagaac gagagttgca      1920
     gaaacttttg gatggcgata ttatagagga gtgcgaatcc ccgtgggccg caaatgtcgt      1980
     actggtgacg aagaaagatg gtggagttcg actatgcgtc gactatagaa aattaaacgc      2040
     cgtgacggaa cccgaccgtt acccgcttcc gcgaatagaa gacgtgttac acgcggctaa      2100
     aaacacgagc tatatgacta cgtgtgacct gcgctctggc tattatcaaa tagccgtgga      2160
     acccgaagac cgagataaga cggcctttgt gaccccattg ggcacattca ggtttaagcg      2220
     catgccgatg ggtctgcgca attcaggatc aaccttccaa aggcttatgg atcgattcaa      2280
     agccagtaag gaattgtcca acacgtgtct tctgacttat ttagatgacg tgatcatcct      2340
     ttccgagtcc ttcccgcagc acatccagga tctgaatgcg gtattcgata ggctcgagac      2400
     ttttaacctt cggataaatc gagagaagag ttgtttcgct cgcgaatcag ttaaattcct      2460
     aggccacgtg attgtcccgg gaggaattaa agccgacccg gacaaaacgg cagcaatctc      2520
     gactatgccg ccgcccaaaa acgtcaagca actaaagacg tttttacaga cgtcaagttg      2580
     gttccgtcga ttcatcccca attacgctga agtggccaga cccatgacaa accttctcaa      2640
     aaaggacagt aagtggacat ggttgcctat acagcaagaa gcctttgacc acattaagca      2700
     acttcttgtc tcagccccga tcctccgtca agccgacgaa tctaagccat tcaccctgag      2760
     gacagacagt agcggatact gcctcggagc tgtgcttatg caaggagagg gcaccgacga      2820
     gcgccccgtg gaatatgcga gtcgtctatt aaatagcgcc gaaaaaaact ataacaccac      2880
     ggagagagag gcgttagctg ttgtttgggc cgtgacaaaa tttcgcggat acatcgaagg      2940
     ttcggaagta ttgataaaga gtgaccacca accattgcgt tggcttatga ccgtcaagtc      3000
     accgagcggt cgcttggcaa gatgggccct gacgttacag gcttacaatc tacgaataga      3060
     gtatactcct ggtaaggcga atgccatagc cgacactctt tcacggccac cttgcgacga      3120
     tgaagctgat tgtgacatcc gctatgccga agtggatttg ccgtccaggg atcccaagga      3180
     ggttcgggag aaccaggtta aagacctcga agtgcgtgag atcatcgaag atcttgaatc      3240
     cacccacgat ccatttaggg ggagggtatg gtccgaccgg ggatttatta tatccgacgg      3300
     catattatac cgttacgctt ctgacgatag cgacgaggat accgcgtgtt tagtagtacc      3360
     agaacacgag cgtgccaaaa tattagccga ataccatgac gctcctacag ctggacattt      3420
     tggagtcgaa cgaacactgg ctaggataag ggctaagtac tattggcctg gaatgaggca      3480
     aagtatcgcc acgcatatca agaagtgcgt cgaatgccag aggtacaagg ccgataatcg      3540
     gaaaccggct gggctgctgc aaactccagc tcctaaccga cgctttgagg ttgtcgctgt      3600
     tgacctcttc ggaccattac cagcgacgcc taacgggaag aaatggatcc ttattgtaga      3660
     agacacatgc tcgcgatgga tagagttatt cgcgttggag aaggcgacga gtacagagtg      3720
     cgccaaggtt cttgtagagg aagtgtttct acgatacgga gtacctaggc gagtcataag      3780
     cgacaatggg gtacaattca ttagcgagac tatgcagcaa gtatgtcatt cgtttggcat      3840
     aagtcagtct cttacaccta agtatcaccc acaagctaac ccggtagaga gaaaaaaccg      3900
     tgacttgaaa ccgcaactcg ccattttagt tggcaaggat catcggaatt gggacgtaca      3960
     tctctccgca atacgctttg ccatgaactc ggctgtgaca tgtagtacgg gtcactcacc      4020
     aggattcctc acttttggac gtgagatgcg cgcacctgct gacgttatca ccgacatgcg      4080
     ccacatcgtc gaaaacgaca acgctgtgac cagcctcacg ccttacctac gccacttatc      4140
     aacggtgttg tacgaagcga gggaggtcca cgaaaaagca caagcgagcc agaagcgtca      4200
     tgcggatgaa ggccgacgcc ccgcacctga gtacgcccca ggggattatg ttttactcaa      4260
     gactcaaggg agcaacgacg cgttacgtgg gcagactccg aagttcatac cccggcgaga      4320
     cggaccttat cgcgttaaga atatagcgag tccgacaacc tacgtgttag agcggataag      4380
     cagtggtgaa gtgttaggta ggtaccacgt atcccagttg accccatacg taggtgacat      4440
     tcagccgccg gtgaacgaga aacggaagcg cggtaggccg agaaaatact gaccttggag      4500
     cgagggcgct ttttccaggt cagaggggga ggt                                   4533
//
ID   Gypsy-16_MSe-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-293
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 942-942 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 293 BP; 70 A; 89 C; 60 G; 74 T; 0 other;
     tgtaacgcga acgtaagtta cgtacatcta aacccggctt atagcactgt ccgaaccgag        60
     cgtatgcact atgcctcgtt cccgtaccgt cccctccgtc accgcactcc ccgccgctag       120
     cgtccggcga caacactcga gaacgggaca cgcgcgcgcg cctatgtcgt atggataatt       180
     taattgtaat tgcccgtttt atgttgattt gtacgtataa tatatggttg tgttccgaac       240
     cccgtgttct aattgacacc ccaacactca acacgaagca ttccagcatt aca              293
//
ID   Gypsy-16_OrIn-I repbase;    DNA;    INV; 5837 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5837
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1557-1557 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..4736
FT                 /product="Gypsy-16_OrIn-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADSDEEGDKMDVSQLLAQLKQLTTALQGAGRNNIPK
FT                 SVYDAIRPWTPENQDTYPIQYFVEIFEDATNNLNETQKLQILKTKLGGSAV
FT                 NFLVEHPELREGDDRYNRTRDALVRWYGVTDPIKAAKELWDIRKSSEETPR
FT                 QFAARVRGAARNLVISEKVEQTAEQRAQAIEQRANAAFIRGLPPRFSALLT
FT                 ANPGTNLELSVKKTEELEEIFSRSNEKVTYGEDWIDVAPIQALDTKDQRMF
FT                 RCFHCNEPGHYAARCPNKEKDGNRRPTETQERPPHRCYFCNEWDHYSIRCP
FT                 KYPRCGFCGERGHYEQNCTEMVKVLRPSGRTNPSEISKLPLETQPSAQLSG
FT                 IQPTQTDVSSDNYDIAQVEHEILRVRAEPVIQIQAEVNREKVNFTLDTGAQ
FT                 VSTLNKPLTTAPMEKSTIRASAADGRALDVRGEQTAIVNWKGHETPHTFLV
FT                 LGPENRGLNLMGLDLMRKLPIGVKPGMREPYEVSGLDTTTLTGTLDPPKTD
FT                 KEEIELKTNDDQNEVKPDESDDIMVGPEQPRSETVETTDETIPYIDDERPI
FT                 PSREELEAALSHLETPARHLALATLSKRMNLFGEPRMEGCSLNVYHEIDTG
FT                 DVQPVHRKPYPVPFALRPIIEEQLRELIRQQIIVPSKSPWSSPVVLVKKKG
FT                 ENTTQAENYRLCVDYREVNKVTKSDEFPMPNMNETLELLGGNKLFTTLDLT
FT                 AGYHQIPMAPQDQEKTAFSTLGQHYEYVRMPFGLKNAPATFQRTMNTILRD
FT                 LIGEICLVYLDDIIILGRNLEEHLQNINEVLDRIEASGLRLKFKKCSFLRQ
FT                 SVEYLGHIVTTEGIQMDPMKTEAIRMFPIPKTRTDIRAFLGLAGYYRKFVP
FT                 KFAEIAAPITKLLRATVELSWGPDQQQAFEALKAELQSDRILTYPDFDSKN
FT                 PFILATDASGLALGAVLSQVQDGQERPIGYASRKLNPAEQRYSTTERELLS
FT                 VVWATSHYQPFLLGHKFVLETDHAAVTAAMNIRDPTSRIGRWILRLSEYEF
FT                 EARHRPGTHMGHADGLSRIVLGRLAIAEYPTELLRAAQEIDPWVKSIANQQ
FT                 ELTGYSKENGIWGREFRENGNREWKPLMPATLRHWVLTACHDDEWSGHPGI
FT                 EETERRVRREAYWPTITKYVTSFVKSCEQCQRRKSPTRLNAPIQKPTMPKK
FT                 PNEIVAMDLVGPFPDGNDKKMILTIIDQFTKYAEAYPLKNGTTIEILKALK
FT                 GKYFPTHGIPETIVTDRGTVFTSEKFITFCKLHGIWKRKTTAYHPQSNGVI
FT                 ERFHRTLEDIVANLSKENGRDWEVLLPTALAAYRSSTHSSTGYSPNFLHFG
FT                 RDIRAPSSIKFQXEKPDDFWRSMDRSNRARESALRTMEKRWKAREVQANKT
FT                 RNPRYLQINEPVYVKIMHPVTGANKKFGARWVGPWYVQKKISEVNYVVQDT
FT                 TGRNHLLHISRLKTAFLRGPLNQEQDQIVQRPTPQTEPEEEKHDDDEDYYE
FT                 LPDNRRSENNHADKDVLKRAPDMEPCMENDVLRQPDKDPTESSDDWDNAYQ
FT                 PIIVPPYSLRPRTITSKNSIC"
FT   CDS           5013..5834
FT                 /product="Gypsy-16_OrIn-I_2p"
FT                 /translation="MSQGKNIATLRLDLLETHFGIIGDCAHLLRNARCKHY
FT                 RKKKFEKLIFALRACYRIAGIPPDQIPPDSEYDLSDLETEVEVPKRMSDRL
FT                 QNLEQQLRHRPPVQKVIQSPIIRVNNIPMTSVRPWSAGPSEEETEEPEVIN
FT                 WTNQEIPATTITPTVTTPSTTRKRPRTSSPKTTPTKTAEARDHASDSPVPT
FT                 AQNCRVCRRPGGIGRMRRCDACRNFFNRRKGRPPIQCRHTSAKDNAPTCTY
FT                 CRYKRCARLARDSTSTKEGKGLPMRASATRGEE"
XX
SQ   Sequence 5837 BP; 1966 A; 1413 C; 1370 G; 1087 T; 1 other;
     atttggtggc aaagcggtgg gatatggttg tagttctcga acagacccgg acccaaaaca        60
     aagaaaacaa aacatttata taatacccga ttttgacgaa aatattcacg aattagacga       120
     caaagatggc agacagtgat gaggaaggag acaaaatgga cgtcagtcaa ttgctggccc       180
     agcttaaaca gctaacaacg gctctacaag gagctgggag aaacaacatc ccaaaatcag       240
     tttacgatgc gatcagaccg tggacccccg aaaatcagga tacatatcca attcaatatt       300
     tcgtcgaaat attcgaagac gctaccaaca atctgaatga gactcaaaaa ctacaaattc       360
     tgaaaacaaa acttggagga tcggcggtta attttttggt cgaacatccg gaattaagag       420
     aaggagacga tcgctacaat agaacgcgcg acgcactcgt gagatggtat ggagtcaccg       480
     acccgatcaa agcagcaaaa gaactatggg acattagaaa gagcagtgag gaaacaccaa       540
     gacagtttgc cgcacgcgtc cgaggggctg caaggaattt ggtgatctca gaaaaggtgg       600
     aacagacggc cgaacagaga gcccaagcca ttgaacaacg tgctaacgca gcgtttatcc       660
     gcggcttacc accccgattt tcagcgttac tgaccgctaa cccagggacc aaccttgagc       720
     tatctgtaaa gaagacggag gagttggaag aaatattctc aagatcgaac gaaaaggtca       780
     catacggaga ggattggata gacgtcgctc ctattcaagc attggacaca aaagaccaac       840
     gaatgttccg atgctttcat tgtaacgaac ctggacatta tgcagccaga tgcccaaata       900
     aggaaaagga cggaaatcga agaccaacag agacccaaga gcgaccacca caccgttgct       960
     atttctgtaa tgaatgggac cactattcca tcaggtgtcc gaaatatcca agatgcggat      1020
     tttgcggaga acgcggacat tacgagcaaa actgtacgga aatggtcaaa gtcctacgac      1080
     cgagcggacg gacaaatccg agcgagatat cgaaactacc actcgaaaca caaccgagcg      1140
     cgcaattaag cggaatccaa ccaacacaga cagacgtgtc cagcgacaat tacgacatag      1200
     ctcaagttga acacgaaata ttacgtgttc gggctgaacc agtaatacaa atacaggcgg      1260
     aagtaaatag agaaaaggtg aacttcacgt tggatacggg agcacaagtg tccacattaa      1320
     ataaaccact gacgacggca ccgatggaga agtctacaat ccgagcttct gctgcggatg      1380
     gacgcgcctt agacgttcgt ggagaacaaa cggccatcgt gaactggaaa ggccatgaaa      1440
     cgccacatac ctttttagtc ttgggcccag agaaccgagg attaaatctg atgggtttgg      1500
     acctaatgcg aaaattaccc attggagtta aaccaggcat gagagagccg tacgaagtga      1560
     gcggtctaga tacaaccaca ctgacaggga ctctagaccc accgaaaaca gacaaggaag      1620
     agatcgagct gaaaaccaac gacgatcaaa atgaggtgaa accggacgaa agcgatgata      1680
     ttatggtagg accggaacaa ccgagaagcg aaacagttga gacgaccgac gagaccatac      1740
     catacatcga cgatgagcgt cctataccaa gcagagagga gttagaggca gcgttatctc      1800
     acttagaaac gccagccaga catctcgcac tcgccacgtt gagcaagcga atgaacctgt      1860
     ttggtgagcc aaggatggaa ggatgctccc taaatgtata ccacgagatc gacacgggag      1920
     acgtacaacc ggttcatcgg aaaccttacc ctgtcccttt cgccctaaga cccataatag      1980
     aagagcaact ccgggaactg attcggcaac agatcattgt accatcaaaa agcccgtggt      2040
     catcccctgt agttctggtg aagaagaaag gggaaaatac gacacaggcg gagaattatc      2100
     gtctgtgcgt ggattatagg gaagttaaca aagtcactaa gtctgacgag ttcccaatgc      2160
     caaatatgaa cgagacgctc gagctcttag gtggaaataa attgtttacc acactggacc      2220
     taacggcggg ataccatcag ataccaatgg caccccaaga ccaagaaaag actgctttct      2280
     cgactcttgg acaacactac gaatatgtac gaatgccatt cgggctgaaa aacgccccag      2340
     cgacttttca acggaccatg aacaccattc tacgcgacct gatcggagaa atctgtctgg      2400
     tgtacttaga cgatattata attttgggac gaaacctgga ggaacattta caaaatataa      2460
     acgaggtact cgaccgaatc gaagccagcg gtctacgatt gaaatttaag aaatgctcgt      2520
     ttctacggca atcagtggaa tatcttggcc atatagtaac tacagaaggc attcagatgg      2580
     acccaatgaa gaccgaagcg atacgtatgt tccccattcc gaagacgcgg acggacatcc      2640
     gagccttttt aggactcgcg gggtattacc ggaagtttgt acccaagttc gccgaaatcg      2700
     ccgctccaat cacgaaactt ttgagagcaa ctgtggaact aagctgggga ccagatcaac      2760
     aacaagcctt cgaagccttg aaggcagaac tccaatctga tcggatactc acctaccctg      2820
     attttgactc taaaaaccca tttatactag ccaccgacgc atccggacta gctttgggcg      2880
     ccgtcctatc acaggtccag gatgggcagg aaagaccgat cgggtacgcg agccgaaaac      2940
     taaatccggc tgaacagcga tactccacga ctgagcgaga attgttgagc gtggtgtggg      3000
     caaccagtca ctatcagcca ttcttgttag gtcacaagtt cgtgctcgag accgatcacg      3060
     ctgccgtaac agctgccatg aatatacgtg atccaacatc aagaataggt cgatggatcc      3120
     tacgattgag cgaatatgaa ttcgaagctc gacatcgtcc gggaacacat atgggacacg      3180
     cggacggact tagccggatc gtacttggac gattagcgat cgccgaatat ccaaccgagc      3240
     ttcttcgagc ggcccaagaa attgacccct gggtaaaatc aatcgccaac caacaggaac      3300
     ttacgggtta ttccaaagag aatggaatct ggggcagaga attccgggaa aatggaaacc      3360
     gcgaatggaa acccctgatg cctgcaaccc tgagacattg ggtgttaact gcctgccacg      3420
     atgacgagtg gtcaggacac ccaggaatcg aagaaaccga acgccgcgta agacgagagg      3480
     catactggcc aaccattaca aaatacgtaa cgtcgttcgt gaaatcgtgt gaacaatgtc      3540
     agaggcgtaa gagcccgacg agactgaacg cgccaattca gaaaccaact atgcccaaaa      3600
     aacctaacga gatagtcgct atggacttgg ttgggccatt cccggacgga aacgacaaaa      3660
     aaatgatatt aaccatcatt gaccaattta ctaaatatgc cgaagcatac ccgctaaaga      3720
     acggaactac gatcgaaatc ctgaaagctc tgaagggaaa atacttccca acgcacggga      3780
     tcccggaaac tattgttaca gataggggaa ccgtgttcac ctcagagaaa ttcattacgt      3840
     tctgcaaact ccatggcatc tggaaacgaa agacgaccgc ataccaccca cagtccaacg      3900
     gggtaataga acgattccat cgcaccttag aggacatcgt tgcgaacctg tcaaaggaaa      3960
     atggccgcga ctgggaagtg ttgttaccta cggcgctcgc agcataccga agttctactc      4020
     attcatccac gggatactcc ccgaacttcc ttcatttcgg acgagacata cgtgcaccaa      4080
     gctccattaa gttccaakgg gagaaaccag atgatttctg gagatcaatg gataggagca      4140
     accgagctcg ggagtccgcc ttgcggacaa tggagaaaag atggaaggca cgcgaggtgc      4200
     aggccaataa aactcgaaac ccacgatact tacaaataaa tgaacctgta tatgtaaaga      4260
     tcatgcaccc ggtaaccggg gcgaataaga aatttggtgc acgatgggta gggccatggt      4320
     acgttcaaaa gaagatctct gaagtaaact acgtcgtaca agacaccact ggaagaaacc      4380
     atttgctgca catcagtcgg ctaaagactg cttttctgag ggggcccttg aatcaggagc      4440
     aggaccaaat agtccaacga cccacacccc agactgagcc agaagaggag aagcacgatg      4500
     acgacgagga ctactacgag ctccctgaca acagacgctc ggagaacaac catgcggaca      4560
     aagacgtcct caaaagagcg ccggacatgg aaccatgcat ggagaacgat gtactcagac      4620
     aaccggacaa ggacccaacc gaatcaagcg acgactggga taatgcatac caacctataa      4680
     tagtcccccc atattcccta cggccacgga caattacaag caaaaattca atttgttaaa      4740
     atagacaatt acaagcaaaa attcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4800
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4860
     aatttttgtt ctagcattca aactagggtt agtgtcactt taggaatact tcatagcaaa      4920
     cctcttccaa cttaactttt atttatagct atatttaata gaattttaaa acttaataag      4980
     ccttacttac atccttccag gaaacggtag aaatgtcgca gggaaagaat atcgcgaccc      5040
     tccgcctgga ccttctagaa acccactttg gtattattgg cgattgcgcc cacctattaa      5100
     gaaacgccag gtgcaagcac taccgaaaaa agaaattcga aaagttgata tttgccctcc      5160
     gcgcgtgcta tcgcatcgcg gggatcccac cagaccagat cccaccagac tcggagtacg      5220
     acttgtcaga tttggaaact gaggtggagg taccaaaacg aatgagcgac cggctacaaa      5280
     acctagagca acaattaaga caccgaccac cggtccaaaa ggtaatacaa tcgcctatca      5340
     tacgggtcaa caacatccca atgacgtccg tacgaccatg gtcagcagga ccatcggagg      5400
     aggagactga agagccagag gtaattaact ggacgaatca agaaataccg gccacgacca      5460
     tcacaccaac tgtcaccacc ccatcgacca ccagaaagcg accacgaacg agttcaccga      5520
     agacgacccc aacgaagaca gccgaggcca gggaccacgc ctccgactct ccagtgccca      5580
     cagctcagaa ttgcagagtc tgcagacgac cgggtggaat cggacgaatg cgtcgatgcg      5640
     acgcatgtcg gaactttttt aatcgacgaa aggggcgacc cccgattcag tgtaggcaca      5700
     catcagctaa agacaatgca ccgacctgca catactgccg atacaagagg tgtgctcggc      5760
     tcgctcggga ctccacatcg acaaaggagg gcaaaggatt gccgatgagg gcatcggcca      5820
     cccggggaga agaggga                                                     5837
//
ID   Gypsy-16_OrIn-LTR repbase;    DNA;    INV; 556 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-556
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1523-1523 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 556 BP; 182 A; 95 C; 143 G; 136 T; 0 other;
     tgtaataagg aagaaccagt aagaaccggt gatgaagaac tgatacaccc caccccggag        60
     ggaaaccccg ttccgagtgg gaacgccatt atataaaccc ccgtcagtct ctcagcagca       120
     gtagtctcga gtcgacagcc agtttgtgaa gtttagaaaa gtgtagaaaa tcgttgtaaa       180
     gaaaattaaa gcattgttag tgtggataag gacacggact gaattaggtg agcgatattt       240
     taactgtttt cttgtatatg aaggatttta gagtaaggta aattcatagt aacaaatgaa       300
     taaatttaat gtatgcaagt tggaagaggt tacaaataaa attagaccct gtataatttg       360
     aatagttgtt ggtgaatttg ttccccaaaa tcttaaagga tagcgagcga agaaccggtg       420
     gtggactgtg gacggacgtg tccagaagga attagagtgg gtagcgctcg gaggagtccg       480
     atcgcccgga agagcccgat catttaaacg gtctaaggta agcctctcac tccgcagacg       540
     aaatcgggga attaca                                                       556
//
ID   Gypsy-16_PBa-I repbase;    DNA;    INV; 10106 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-10106
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 701-701 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..1538
FT                 /product="Gypsy-16_PBa-I_1p"
FT                 /translation="MVDREVDSLTRQIGGINVNDDVNTNRRTNANMPYTSL
FT                 RDASETILPFDGKNMPVSQFANSCLHARNMVSPSAEYGLVQMIKNKLVGPA
FT                 LRVALSGEYNDIESLLAVLKTRFAPVYSTSQLHGELSKITQYPDETVVDYG
FT                 SRVSMILQQLKSCYQTENPNQAIQFVNSAETNAVRNFLTGLKTDIYTRIHP
FT                 REPGTLNNAIESAIKAESEYNEHMQRMRITEGLMQSIRCNNCLGYGHNSQS
FT                 CSTFNPLAQISHVQWQPKVCSFCKNLGHTRAECRTLQPRILNPRNPGINVN
FT                 PRNQNYNINQNNRQNFPTSRNMGLICRYCKIPGHSLEQCRKRQYNNNVRNQ
FT                 ENRIGNRMFENRILENSQRNRPQEAPGNRERAQRVGAALNERPRVRLVTPN
FT                 ENREETPV"
FT   CDS           6307..8154
FT                 /product="Gypsy-16_PBa-I_3p"
FT                 /translation="MTENEYSITELKNNPGIFYEALGELRTSDISWKMIMY
FT                 INLDDVIGVSEGLQREINRTKLQCDQIPYTCSTGRKQLAELTRKINKIKQY
FT                 KFHIHELLIGSRMKRAPLEFIGQLSKILFGTLTAEDFYYINNAIEHVENKT
FT                 NDLATLLINQTIATRSRFGELYNVTLKIKTQLADLRQYIDEKYKNVTDVII
FT                 RNKINDDIERVIEDINIAILEHEIDLNILIDGILFGKQGLIHPRIISPQYL
FT                 IKNSKHIQEQIPYAEFPVAINKEGIDRLIKISTLHVAYLQDRLVYILQIPL
FT                 LTPGKYKLYKSIPLPVRQSFDTTKFATIETEIAHIALNEDADNFYEFRQGE
FT                 LEECIASDSVFICPATFPLKKIRQTPSCDVEILLNKNIKPNKCKIKIMELQ
FT                 DTYWKALTTPGNWIYSTTEKEIVRLNCRHTTKQFEINNSGIISVQQGCKIR
FT                 ARTATMSHPAYQTTTFAQHFIPTNNLSILELYEPIQREYKINFTEAAHEIW
FT                 ITNHSNIEASFNDIIEKARQIKERKLQNSRFTMYSAAACSIGLLGILLLAL
FT                 SLACKNSWICDVARQVHERCCKKQRSNDTSSHPSIENKNACSESACTQFNE
FT                 EQPQSLATNAKEEHCTVS"
FT   CDS           join(1625..4069,4133..6307)
FT                 /product="Gypsy-16_PBa-I_2p"
FT                 /translation="MIDTGSDINIIKETCLHENMPIDTKMVFELSGITKGR
FT                 TRTIGVTKVRIFDVDILFHVVTDKFPIRQDGILGTEFFKSQRATIDYPRAS
FT                 LIVNGKPYYFHNDETVILPARTRKQIFVRIANPEIKNGYIPKLNAGPQVYL
FT                 GNAVVSNHHGVAHLYAVNSSDEDIELAIPTVKIYPFEEIREEIKENFSNKR
FT                 DNDDERVNKILQLLRLDHLNEEEVTSATSLVTSHAERFHLPGEPLGATNVF
FT                 KHRIFTTDDRPINVKQYRYPQIHKEEIRRQVDEMLDKGVIEPSSSPYNSPL
FT                 WIVPKKDDSLGNKKWRLVIDFRALNEKTIGDAYPLPNIVDILDQLGSAKYF
FT                 SVFDLASGFHQIPMDETDKHKTAFSTPYGHFEYNRMPFGLKNAPATFQRLM
FT                 DQVLTGLQGIELFVYLDDIVIYARSLQEHETKFHRLMKRLTKANLYLQPDK
FT                 CEFLKKEVAYLGHIISEDGVRPDPKKISAVKNFPRPKTRKNIKQFLGLAGY
FT                 YRRFIENFSKIAKPLSDLTKQSVAFDWQRKQQEAFDELRNALCSEPILQYP
FT                 NFNEPFIITTDASGYAIGAILSQGKIGNDLPIAYTSRVLSDAETRYSATEK
FT                 ELLALIYAVKHFRPYIYGRKFTLVMDHKPLEWLNSIADPTSRLMRWRLKLA
FT                 EYDYQIKYKPGKKNKNADALSRNPTENIKNIFPLQAKRARSSSEGSMEADY
FT                 KKQKISHPKFKRMWESEGSGNPAPHKKLRPEELSPYEDSDDELKEPPRSKF
FT                 IADLESSDSDSTASYYYDTDYETDGSGIIRKGEKRKRESSSSNLEHRKLQR
FT                 RRKKRKPSKTSEFRRDSVKRHTDDDAATRQRQEVETPMDYSAVAATRKRAS
FT                 RDNTTGDPYKKKPNKNTQKYKYLEEEPMDIATHSSDSFKVERNIEVKVDVH
FT                 SPPKISIGTQHEKIKRSQSKLKNTDSIQILEENIPLNKDEIQAMEISSSSE
FT                 RMEFEIENSLMNYRNPKTPSDNTDKTESEEIFSPPSRKAKPRPLEKSKNKN
FT                 REIQKLSKPMSFNKKINKKSAKKNKIIKEKPKPKIKEISEVPINTLESRDH
FT                 IWMKNNNIICFVNTKGEPIDEIGQELIERKLYQRPSNFKGIXGHVLTMDRN
FT                 NRKIFGLIIKEELNNRIRENDIVNAFKELKSEMIRSNILHADISQSKSNIN
FT                 VPWFRIRNIMRLTFLNTNIQITICKGQICIPKLEERLHIIHECHESSVGGH
FT                 KGIAKTVARIRHKYYWHNMKKQVENYIQACNSCQKKKLVRVKTKQPMIITD
FT                 TPVDAFDKVSMDILGPLPVTENDNEYILTIQDLLTKYSIAVPLVQTNSEEI
FT                 AKAFTRRFICQFGSPKAILTDQGSNFTSSMMKKFAKYFKIKQYRTSAFHPQ
FT                 SNGSIERSHHVLTEYLKHYITNERDWDNWLEHAMFSYNTSVHEGTKFTPYE
FT                 LVFGKIARLPSQIKNDDDFETYNDYVNELIDKLADLRKLAASNLGNSKERY
FT                 KYYYDRKLKTQRYKEGDFIYLLKPKKSHKFDDEYTGPYKIIEVLENNNIKI
FT                 LISRNKTKIIHVNRTKPARIPDQG"
FT   CDS           8237..9277
FT                 /product="Gypsy-16_PBa-I_4p"
FT                 /translation="MRRRASIVEQHLQWSRVLGRLRRMSNMGSRYRPTRSY
FT                 MRNPPENGTASTSLSPIPEGRDVWPGMDIGPTDPDVYQREPIHIPQLPRRE
FT                 YETIPPVEPATITPTSDLIRDLLQEIDAGIDTVENLQRPPAELPPEASNSE
FT                 ADEHRSVSAAATGSPSNSEPEYMEMGPQATYVNAPAERRDVTTQIEEASER
FT                 TYDDLEPPQRNEHPVSERGIPIPQSSPPLGRSHSVLVPPYYRDYLNLNSMP
FT                 AYKLYCLSAWYVQISDNVILCANCATSEHTFCVPNRQRALWRHLHAISRTL
FT                 QNTTLHCGRCYKLLLRARRAIDCFNCRRHVIDREGRVDHLVYTLLCEIAMP
FT                 RDLF"
XX
SQ   Sequence 10106 BP; 3780 A; 1892 C; 1891 G; 2540 T; 3 other;
     cgaagacaaa gtactttttg gtggcagcgg tgggatccct catttgctgg gatatccaaa        60
     actcggcgag atccttcact atctgggata gccgaatctt gtggaatatt cctcatctca       120
     cgaagaattg aagaggagat tttcaagcaa gtgatagcgg ggattgaact gcgataagaa       180
     ctttcgatta tggaattgcg tacgcttgtc ttgctttact ttactgcgac tcacatgtaa       240
     gtcaaaatta tcatttataa ttgtaacaag actcgaaatc gttcggtatt tgtaaaaatc       300
     cgttataaaa ttttaattac ataacaataa aaatggttga tcgtgaggta gactctttga       360
     ctcgtcagat aggcggtata aacgttaacg atgacgttaa cacaaaccgt cgtacgaatg       420
     cgaatatgcc atataccagt ttacgtgatg cttccgagac aattctcccg ttcgatggta       480
     aaaatatgcc tgtatcgcaa ttcgctaata gttgtctgca tgctcgaaat atggtctctc       540
     caagtgcgga atatggatta gttcaaatga ttaaaaataa attagtcgga ccagcattga       600
     gagtggcttt aagcggagag tataacgaca tcgaatcctt actggctgtc ttgaaaacgc       660
     gattcgcacc tgtttattct acgtcacaat tgcacggaga gctttctaaa ataacgcaat       720
     atccggatga gactgtggta gattacggta gcagagtatc tatgatttta caacaactaa       780
     aatcttgcta ccaaaccgaa aatccgaacc aagctatcca attcgtaaat tcggcagaaa       840
     ccaatgctgt gagaaatttc ttaactggat taaaaacgga tatatatacg cgaatccacc       900
     cacgagaacc gggaacatta aacaacgcaa tagaatctgc cataaaagct gaaagcgaat       960
     ataacgagca tatgcaacgt atgagaataa cagagggatt aatgcagtct ataaggtgta      1020
     ataattgtct tggatatggc cacaattctc agtcgtgtag tacttttaat cccctcgctc      1080
     agatttcgca cgtacaatgg cagcctaagg tctgttcttt ttgtaaaaat cttggtcata      1140
     cgcgagctga atgcagaacg ttacaaccac gaattctaaa cccacgaaac ccgggaatca      1200
     atgtaaaccc gcgaaatcaa aattataata ttaatcaaaa caaccgacaa aatttcccta      1260
     cttcaagaaa tatgggatta atttgtcgat attgcaaaat accagggcat agcttagaac      1320
     aatgtcgaaa aaggcagtac aacaataatg tgagaaatca agaaaatcga atcggaaacc      1380
     gaatgtttga aaatcgaatt cttgaaaatt ctcaacgtaa cagaccgcaa gaagctccgg      1440
     gaaaccgaga gcgggcacag cgagtcggcg cagcgctgaa cgaacgcccg cgagtgcgcc      1500
     tggtaactcc gaacgagaac cgcgaggaaa cgccagtgta ataaacgtcg catgtaataa      1560
     aattgggaaa ccaccttccg ttatactacc aagcaaaaat ttggttgacg aacgagcaaa      1620
     ctttatgata gatacaggtt ctgatattaa tataataaaa gaaacctgcc ttcatgaaaa      1680
     catgcccatc gataccaaaa tggtgtttga actaagtgga ataactaaag gtcgaactcg      1740
     tacgataggc gtaacaaaag tacgcatttt cgacgtcgac atattattcc atgtagtcac      1800
     ggataaattc cctattcgac aggatggaat tttgggcact gaattcttta agagccaacg      1860
     agcaaccata gactacccga gggcaagtct gatcgtaaat ggcaagccat attattttca      1920
     taatgatgag accgttattc ttcccgctag gacgcgaaaa caaatatttg tacgaatcgc      1980
     caatccagaa ataaaaaatg gatatattcc aaagttaaac gcaggaccgc aggtgtactt      2040
     aggtaacgcc gtcgtatcaa atcatcacgg agtagcgcat ttatatgctg ttaactcgtc      2100
     ggatgaggat atagaattag cgatccctac tgtaaagata tatccattcg aagagataag      2160
     agaagagatt aaggaaaatt ttagtaataa acgagataac gacgatgaac gtgttaataa      2220
     aatattgcaa ttactacgtc tcgatcattt gaacgaggag gaagtcacta gtgccactag      2280
     cctagtaaca tcccatgcgg aaagatttca tttgccagga gaacctttag gcgcgacaaa      2340
     tgtttttaaa caccgaatat ttaccaccga tgatcgtccg attaatgtca agcaatatcg      2400
     ttatcctcaa atacacaagg aggaaatacg aagacaggtc gacgagatgc tggataaagg      2460
     tgttatagaa ccatcaagtt cgccttacaa ttctccatta tggattgttc ccaaaaagga      2520
     tgattcccta ggaaataaaa aatggcgtct agtaatagat ttccgtgctt taaatgaaaa      2580
     gactatcgga gacgcttatc ctcttccaaa tatcgttgac atattagatc aactcggaag      2640
     tgcaaaatac ttttctgtat ttgatctagc atctggtttt catcaaattc ctatggatga      2700
     aacagataaa cataaaaccg cattttcaac gccgtatgga cattttgaat ataatcgtat      2760
     gccgttcgga ctaaagaatg ctcctgctac atttcagaga ctaatggatc aagttttgac      2820
     aggattacaa ggaatagagt tgttcgtata tcttgatgat atagtaattt atgcccgctc      2880
     actccaagaa catgaaacaa aatttcatag acttatgaaa cgacttacta aagctaattt      2940
     atacttgcaa cctgataaat gcgaattttt gaagaaagaa gtagcatatc tgggacacat      3000
     aatatctgaa gatggcgtac ggccagatcc aaaaaagata agcgctgtga aaaatttccc      3060
     taggcccaaa acacgaaaga atattaaaca gttccttgga cttgcaggat attatagaag      3120
     atttattgaa aacttttcca agattgctaa gcctttatct gatttaacaa aacaatcagt      3180
     tgcttttgat tggcaacgga aacaacagga agcatttgat gagttgcgga acgctttatg      3240
     ttcagaaccg atattacaat atccaaattt taatgaacca tttattataa caacagatgc      3300
     atctggatat gcaattggag ctatattaag tcaaggaaaa ataggaaatg atcttccaat      3360
     agcatatact tctcgagttt taagcgacgc agaaacgaga tactcagcaa cagaaaaaga      3420
     attattagca ctgatttatg cagtaaaaca ttttcgcccc tatatttatg gccgaaaatt      3480
     cacattagta atggaccata aaccactaga atggttaaat tcaatagctg atcctacctc      3540
     gagattaatg cgatggaggc ttaaattagc ggaatatgat tatcaaataa aatacaaacc      3600
     gggaaagaaa aataaaaacg ccgacgcttt atcacgaaat cctacagaaa atattaaaaa      3660
     tatatttcct ctacaagcaa aacgtgcacg atcttcaagc gaaggttcca tggaagccga      3720
     ttataaaaaa caaaaaattt cacatccaaa atttaaaaga atgtgggaga gtgagggatc      3780
     tggaaatccc gcaccacaca aaaaattaag acctgaagaa ttatcccctt atgaagattc      3840
     ggatgatgaa ttaaaagaac cgcccagaag taaatttata gctgacttag aaagcagcga      3900
     cagtgatagt acagcatcat attattatga tactgattat gaaaccgatg gctcaggaat      3960
     tattagaaag ggagaaaaga gaaagcgaga gagtagctca tcgaatctgg aacatcgcaa      4020
     actgcaacga agaagaaaaa aacggaagcc ttctaaaact tccgagttct gaaagtatag      4080
     taaaacacca cgacaacgtt aaggaaatgg cgaggcctgt gaatacggct gaaggcgtga      4140
     ttcggtcaag cgtcataccg atgacgacgc cgccacgcga cagcgtcagg aagtggaaac      4200
     gccgatggac tacagcgccg ttgcagcaac gcgcaagcgc gcgagcagag acaatacaac      4260
     gggtgatcca tataaaaaga aacctaataa aaatacgcag aaatataaat atttagaaga      4320
     agaacctatg gatattgcca cacattcaag cgatagtttt aaagttgaaa gaaatataga      4380
     agtaaaagtt gatgtccatt caccccctaa aatttctata ggaacgcaac acgaaaaaat      4440
     aaaaagatca caatcaaaat taaaaaatac tgattctatc caaatattag aggaaaatat      4500
     ccctttaaat aaagacgaaa tccaagcgat ggaaatttca tccagtagcg aacgaatgga      4560
     atttgaaatt gaaaatagcc tcatgaatta tcgaaatcca aaaacgccaa gcgataatac      4620
     cgataaaacc gaatcggaag aaatattttc accaccttct cgtaaagcta aaccacgccc      4680
     attagagaag agtaagaata aaaatagaga aatacaaaaa ttatctaagc caatgtcttt      4740
     caataaaaag ataaataaaa agtctgcgaa aaagaataaa ataatcaagg aaaaaccaaa      4800
     accaaaaatc aaagaaatct ctgaagttcc aatcaatact ttagaatcac gagaccatat      4860
     ttggatgaaa aataataata taatatgttt tgtaaacacg aaaggagaac cgatagacga      4920
     aataggtcag gaattaatag agaggaaatt atatcaaaga ccttcaaatt ttaaaggaat      4980
     aatkggacat gtattaacta tggacaggaa caatagaaaa atattcggat taataattaa      5040
     agaagaatta aataatagaa taagagaaaa tgatattgta aacgccttta aagaattaaa      5100
     aagtgaaatg atacgatcga atattttaca cgcagatata tcgcagagta aaagtaatat      5160
     caatgtgcca tggtttagaa tacgcaacat tatgcgatta acattcctaa atactaatat      5220
     acagataaca atatgtaagg gacaaatatg cataccgaaa ctagaagaga gattgcatat      5280
     tatacatgaa tgtcatgaat ccagtgtcgg aggacacaag ggaatcgcga agacagtggc      5340
     gcggatacgt cacaaatatt attggcataa catgaaaaaa caagttgaaa attatattca      5400
     agcttgcaat agctgtcaaa agaaaaaatt agtacgcgta aaaacaaaac agccaatgat      5460
     aataaccgat acacctgtcg acgcattcga caaagtttca atggatattc taggaccgct      5520
     acctgtaaca gaaaatgaca atgaatatat tttaactatt caggatttgc taacaaaata      5580
     ttccattgcc gtgcctctcg tacagacaaa ttcagaggaa attgcaaaag catttactcg      5640
     acgctttatc tgtcaatttg gtagccccaa agcaatattg acggatcaag gatcaaattt      5700
     cacgagttct atgatgaaga aatttgcaaa atattttaaa attaaacaat atcgtacatc      5760
     cgcctttcat ccgcaatcaa atggttcgat agaacgaagt caccatgtat taaccgaata      5820
     tctaaagcat tatattacca acgagcgaga ttgggataat tggctcgagc atgctatgtt      5880
     ttcgtataat actagcgtac acgaaggaac gaaatttact ccttatgaat tagtatttgg      5940
     aaaaatagca cgtttacctt ctcaaataaa aaatgatgac gattttgaaa cttataatga      6000
     ttacgtgaat gaattaattg acaaattagc agatttaagg aaattggcag catcaaattt      6060
     aggcaactct aaagaacgtt ataaatacta ttatgatcga aaattaaaaa cacaaagata      6120
     taaggaggga gattttattt atttgttaaa gccgaaaaag agtcataaat ttgatgatga      6180
     atataccggc ccgtacaaaa taatagaagt cttagaaaat aataatataa aaattttaat      6240
     ctctcgaaat aaaaccaaaa ttatacatgt aaatagaaca aagcctgctc gcattccaga      6300
     tcagggatga cggagaacga atattcaata acggaattaa aaaataatcc gggaatattc      6360
     tacgaggcgt taggcgagct gcgcacgtca gatatatctt ggaaaatgat aatgtacatc      6420
     aatttagatg atgtcatagg cgtatccgaa gggcttcaac gtgaaataaa ccgaacgaaa      6480
     ctgcaatgcg accaaattcc atatacatgt agtactggtc gaaaacaact cgcagaatta      6540
     acaaggaaaa ttaataaaat aaagcaatat aaatttcata ttcacgaatt gctcatagga      6600
     tcacgaatga aaagagctcc cctagaattc atcgggcaat tgagtaaaat tttatttgga      6660
     acactaactg cagaagattt ttattatatt aataatgcga tagaacatgt cgaaaataaa      6720
     accaacgatc ttgcgacgct acttatcaat caaactatcg caacgcgctc acgtttcggg      6780
     gaactgtaca acgtgaccct gaagataaaa acgcagctag ccgatcttcg acagtatata      6840
     gatgaaaaat ataaaaatgt aaccgacgta attattcgaa ataaaattaa tgacgatatc      6900
     gaacgagtaa tagaggatat aaatatagca atattagaac atgaaatcga tttgaatatt      6960
     ctaatagacg gaatattatt cggaaaacaa ggattaatac atccacgaat aatatcgcca      7020
     caatatttaa taaaaaattc taaacacatt caagaacaaa ttccgtatgc cgagtttccw      7080
     gtagctatta ataaagaggg aatcgatcgs ttaataaaaa tttctaccct gcacgttgca      7140
     tatctacaag atcgtcttgt ttatattttg caaattccat tgctaacacc tggaaaatat      7200
     aaactttata aatcaatacc attacccgtt agacagtcat ttgacacaac aaaatttgca      7260
     acaattgaaa ccgagatagc gcatatagca ttaaatgaag acgccgataa tttctacgaa      7320
     ttccgtcaag gagagctaga ggaatgcata gcatccgaca gtgtctttat ttgcccagct      7380
     acgttcccct tgaaaaagat aaggcagact ccaagctgtg acgtcgagat tttattgaat      7440
     aaaaatataa agcctaataa atgtaaaata aaaattatgg aacttcaaga tacatattgg      7500
     aaagctctga ctactccagg aaattggatt tactctacta cagaaaaaga aattgtgcga      7560
     ctaaattgtc gtcatacaac aaagcaattt gaaataaata attccggaat aatttctgtg      7620
     caacaaggat gtaagattag agcgagaacg gccactatga gtcatccagc ttatcagact      7680
     acaacattcg ctcaacattt catccccacg aataatttaa gcattctaga attatatgag      7740
     cctatccaaa gggaatataa aattaatttc acagaagccg cgcatgaaat ttggataacc      7800
     aatcatagca atatagaggc atcgtttaac gatattatag aaaaggcacg ccagatcaaa      7860
     gaaaggaagt tgcaaaattc acgcttcacc atgtatagtg cagctgcatg cagtatcgga      7920
     ttactcggga tactcttgct cgccttgtcc ttggcttgca agaattcctg gatctgtgac      7980
     gtggcaagac aagtccacga gcgttgctgt aagaaacaaa ggagcaatga tacctcctcc      8040
     cacccctcaa tagaaaataa aaacgcatgc tctgagagtg cttgcactca gtttaatgaa      8100
     gagcagcctc agagtcttgc tacaaacgct aaagaagagc attgcaccgt ctcgtaagtg      8160
     ataccttata agacctgaaa ttttttatta aaatctttgg gtggtcactt gcaggaaatc      8220
     aaagggaaag gtctgaatgc ggagacgagc cagcattgtg gagcaacatt tacagtggtc      8280
     ccgagtttta ggacgacttc gtcgaatgag caatatgggc agtcgatacc gccccactcg      8340
     ctcatatatg cgaaaccctc cggaaaacgg aactgcatcc actagcctct cgccgatacc      8400
     ggaaggacga gacgtctggc cagggatgga catcggaccg acggaccccg atgtttatca      8460
     aagagagccc atccacattc cacaactccc cagacgggaa tatgagacca ttccgccggt      8520
     agagcccgcc acgattacgc caacatctga tctcatccga gatctactgc aggaaattga      8580
     cgcaggaatc gacaccgtgg aaaatctaca gcgaccgcca gctgagttac cgccagaggc      8640
     aagcaattca gaggccgatg agcatagatc tgtctcagcc gcagcaaccg gaagcccaag      8700
     caactccgag cccgagtaca tggaaatggg accgcaagca acctacgtca atgcgccagc      8760
     tgagaggcgt gacgtaacga cgcagattga agaggcatcg gagaggactt acgacgacct      8820
     ggaacctcca cagcgaaacg aacatcccgt aagtgaaaga ggaataccaa taccccagag      8880
     ctctccccct cttggacgat cgcacagtgt tctcgtgccg ccttattatc gtgactattt      8940
     aaatttgaat tcaatgcccg catataaact ctattgttta tcagcatggt acgtgcaaat      9000
     ttccgacaat gtgatattgt gtgcgaattg tgctacatcc gagcatactt tttgcgtgcc      9060
     aaaccgccag cgtgcgctat ggcgacattt gcatgccatt tcgcgaacgt tgcagaatac      9120
     cacactacat tgcgggcgct gttacaagct gttattgcga gcgaggcgcg cgatagattg      9180
     ctttaattgc aggcgacatg tgatagaccg tgaaggccgt gtcgaccact tagtatatac      9240
     tttgttgtgc gagatagcta tgccgcgaga tttattttag cttctgccgc ggagatataa      9300
     tcgtatcttc ttacataaca gctaccagcg ataatacata tatacataca cacacacaca      9360
     aaaaaaaata tgcttctctt tatattataa tagaaataca tacacgtaaa ataacaagaa      9420
     aagttttttt ttttatcatt atgcgatttt atatacatat tatagataca cgcatgcgca      9480
     catgcactac gcatgccaat gtagtatgta atgcaattac taacaaataa aataaaatgg      9540
     tgatggaaaa gaaaaagggg aaaagaatat tatccttcaa tcatatccaa ctaccatatc      9600
     cactctaaca ataatcataa caatagaaat aagagtaaca aaaaaaaaga gagaaaaatt      9660
     atagaaataa aaatgtttta taatatttga tgcatgtgga gagactgaag actcataaca      9720
     aaataataat gacaagatat gcctgaaatg aacatataat ctaatgagta tatataactt      9780
     aataaaaaca aatatattaa gcttattaat cttccttacg taacatatac agccattaat      9840
     taatttgcgc aaataaccta cacctctccc ttaataacca ttccataaaa tatctttaat      9900
     gatcttaaca ataataatat taacaataaa ggtggaagga aaaggaaaaa aaacgtataa      9960
     cacacataca aggagacaga cgactagaaa gaggaaaaca ctagcaataa tatacacaag     10020
     tatatgcata aaaaaataaa tatatataat aaataaaaca ttagttatta taaagttcgg     10080
     agaccgaact tctccacgga tggaga                                          10106
//
ID   Gypsy-16_PBa-LTR repbase;    DNA;    INV; 2462 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2462
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 702-702 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2462 BP; 936 A; 470 C; 300 G; 755 T; 1 other;
     tgtcacgtcc cagcgccgag agtacctcta atcatgttca gtgtaaattt ttcaaaawtt        60
     ttaattattt atgactgact gtgtcaggag acagcaccgt caaacctttc ctatacattt       120
     aataaaagaa tataccgctt aaaattattt aaagatttat acaaaatggc cgctccttac       180
     cacaacctta tggcgctact acagccttaa tgttcctagt aaattttccc tagaacctca       240
     ctaacaaaaa acagaacata ctgaaatcac ttctccagac tgttcagtaa agtaacaaag       300
     aaaatagagc ttaatatcgc atccttatct aagcatttca acattaacaa caaaatctca       360
     acaaatagta aataatgaat aaaaaacaaa tgtaggaaat ataacctcgc ccacgtaatg       420
     cacgaaaact ataacaaaac aattatcggt acattgtaat atctttatta acaattaata       480
     aacaaaatca tataattata taaataacaa aataccaacc aatttcttta tatcgtcaaa       540
     tataacttca gaaactaaga aacccttgta tatcaaacct ttcacttttg ttccatttta       600
     ataataaata taaaagttaa taacaaaatt aataacaata gaaaggatat gaataaggaa       660
     taaaagtcat aatgacaata taacaaaatc catgacaaaa catttattca acagttcacc       720
     tgatacatat ccttatttca aggataaatt ttgttgatgt ccttatatgg atatattttc       780
     cctgtataaa tacattctcc atcgaaaatc ctttcgaaaa cataaatata gtttgtggct       840
     acgattctta attctcaaga tataaacaaa attaagggta tatgaaagca cacacacaca       900
     cacacacaca tgtatacata tatacgtaca ttatacattt ccttataaga tatagttttc       960
     tttatgaaat tatataaaca accccgatag aaacatattt tatctcagaa aagaaattct      1020
     acgatttaaa tttcgtttaa taaaatttat aaataaataa attattatat taacaaataa      1080
     ttattatgaa agatttggac aacacacagg aaatcctgca acttacctca ttacacatac      1140
     ctacctaact cgcaccgttt agaagatatt taaacaatta taaacttcct tacatacact      1200
     tacctcaaaa actcaaatca gttcagcagg caaatctccg tatataaacc agttcaactt      1260
     ctagaaacct tcatcctaga cttatattta taattgttac ttcccttttt tcattaacac      1320
     taatcctatg gctatgacaa aaatcttgaa tattaatatg catggaaaac taccctaacg      1380
     attcaaccaa tcacaatcag agccattttg tacctgaaaa catttaataa ataatgtatt      1440
     acaaatgtaa aaagagttat actgatatat tttagatata ctaattatac gatgtaatca      1500
     ttattattat aaaaattgta aagtatatct aaaacgatat tgcgatgatt aatatttatt      1560
     ataaaagctt aaattcaagc aaactatatg tttgttaatt ataagaaagg aattattata      1620
     acgaagtata actctttgaa aacaaaaata ggtcgaccga atagtcataa gtatgactca      1680
     tggtcaggtt gtaagcaaaa ataagccaac gttaaatgtc aaggccgcca taatatttag      1740
     tcacaagtgt gactcatggt cagtttgtaa gcgaaagtag gccaacgtta aatgtcaagg      1800
     gcgccataat attttagtac cacgagtcat cgctgactca tagcaaatgt aggctaagtc      1860
     gaccaataga aaactatgtc aagaacaact agaaggtctt aaacgcgtga atcatagctg      1920
     actcataatg aaagtagact aacaataggc tttattcaga cctgtagaat cataacattg      1980
     gaatttaggt cacccctact tccatgtttt ggcaacatat aaaaacctca agcgacgata      2040
     ccttggccat ttgccaggca ttcacgtatt cattcattcg gcacttacga ttcgcatcca      2100
     cggacacttg cattattcgc atgctttacg ccacttgcat ttttgcactt gtacttccac      2160
     tcgcattcgc taaatatata tatatatata tacctatcat ttataacagt gaataaattc      2220
     cgattcaaat accacaagtg tgatattata ttattcctta ttcccaaaat cgaaaactct      2280
     ttcctgaaaa taaaagtcat ttcgacattc ctgttaccta cttccttcgc agtatctaat      2340
     cctgaggttt taccctctta accgcatgga aaagaatctc acaaataacg tgtgagtgta      2400
     gctgtcgagg atctgttgat ttcggctccg tccgatctac caggacctcc caggacgtca      2460
     ca                                                                     2462
//
ID   Gypsy-16_PPo-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-136
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2986-2986 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 136 BP; 35 A; 33 C; 32 G; 36 T; 0 other;
     tgttgtatat gtacataggc gcataatctg tgcgcgttaa agaacggctg ctgcgccagc        60
     tgtcagtgtg acacggatgt caataaacca gtctgcacta agctagcggt cgtatcattg       120
     ctccctatat ccaaca                                                       136
//
ID   Gypsy-16_SI-I repbase;    DNA;    INV; 4147 BP.
XX
AC   AEAQ01025185;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_SI_;
KW   Gypsy-16_SI-LTR; Gypsy-16_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4147
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01025185; Positions    5084     938.
XX
CC   Positions [3166-3624] - Integrase core
CC   'GAATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(139..2601,2605..4122)
FT                 /product="Gypsy-16_SI-I_1p"
FT                 /translation="MAHPTIPGSLAIEAFDPANTTWRRWLQRLQGVFLIFG
FT                 IKEQARVPYLLHYVGPTAFDMLSDRLDPVDPFTGQYNDLVQILQDYYAPAP
FT                 LEIAENYSFHQRKQQEGESVQQYVAALRKLSIHCKFGNYLNTALRNQLVFG
FT                 LRNKKAQSRLLEKSDLDFEEAVRIAVTMELSDKSSAQMKDTNTEAASVDYL
FT                 KAGKKPSRKNAGDKRPMQMATKDDNYIRNNNNKFSNQYKNSNIKCYRCGKG
FT                 HLANKCNIDRSVRCHNCGKLGHLRAVCFRATSFTNNLEEMLSLEHVNYRDK
FT                 FLLSLEIEGKKVKFELDSGAAVTVMCESEAIKLFPTATIHHTDLRLISFCG
FT                 RALRCKGYITVRVKYNSTMKNLNIYLINGVRMPLLGREWIRQLNVYDSLIC
FT                 NARVNNVTINSQSKLQEILDRYRNIRSPEFASIKNTQVHLKLKKDTSPVFM
FT                 RARSVPFKLQLLVNKELDILEKAGVIEKVESSKWATPIVPILKKDGRIRIC
FT                 GDYKATLNPHLIVDEYPFPTVDELFLKLANGEKFSKIDLKQAYLQLEIAPE
FT                 DRELLTISTCKGLYKVNRMMYGIAPGPTIWQREIEKILQGIPGVAIFFDDI
FT                 VITGSTDTEHLTRLEELLSRLHKFNVRINLDKSKFFIDKIDYCGYVVDSVG
FT                 IHKDNRKIEAIQKMPRPKNVSEIRAFTGMINYYGRFIQNLSSILHPLNKLL
FT                 QKGVPFVWSRDCETAFNKAKAAFTSNQVLVHFNPKLPLVLATDASSYGVGA
FT                 VLSHQYLDGSERVIQFASQTFSSVQSKYSQIDKEAFAIIFGVKKFVQFLYG
FT                 NNFTLITDHRPLVQIFSPSSLPIYSAMRMQHYAIFLQGFNYKIEYRKSEKH
FT                 ANADCLSRLPVDAPQTIADVVDAYQLEIIETLPVTASKLAYETQKDKDVSE
FT                 LLEALQTGKIIHKTKRFNIEQNEFGLVNNVIMRGSRVYVPKILRAEILKEL
FT                 HSGHFGIVKMKNLARSHCWWPDIDNDIEKLVRNCANCNSHKNNPPKVEVHL
FT                 WEAPSAPMQRVHIDFAGPFLRKMFLLMIDAFSKWLEVHIVRDITAKTTITK
FT                 CREIFAAYGIPQVIVTDNGRSSTSAEFQQFLHMNGIKHKRTSPFNPATNGQ
FT                 VERFVQTCKQALKRMNCDTTNVNFALSKLLLQYRAMPHAITNKTPAEMFLN
FT                 RKISTRLDLMIPVHNNSKLYDNTTENVKTFSCGERVACRNYSGSVKWKFGI
FT                 ISARKGKLHYSIRLDDGRSWERHANQMRKIGENTPTSCTENDHYYWDIEES
FT                 REPECPSVSPSSNTENHLDAPQNAAPVSPQSNIGVDARSEVEAQRRSVRYK
FT                 KRPDFFSECTAKYNK"
XX
SQ   Sequence 4147 BP; 1366 A; 791 C; 894 G; 1096 T; 0 other;
     attggcgacg aggatgggat cgccataatt cgttctgcta aagacatatt ctctccgcgg        60
     cgaagccggc taacctgtgc gtgatcgcca cgtgctgaga atacaaaggc tcgtggtacg       120
     attcgtgata caaggatcat ggcgcatccg acaataccag gatctctcgc catcgaagct       180
     ttcgacccgg cgaatactac atggaggaga tggctacagc gtcttcaagg agtctttctg       240
     atttttggaa tcaaagaaca ggctcgggtc ccgtacttgt tacattacgt ggggcccacg       300
     gcttttgata tgctgagtga tcgactggat ccggtcgatc ctttcactgg ccaatacaac       360
     gacttagttc aaatattaca agattattac gcgccggcac cgcttgagat tgctgagaat       420
     tattcatttc atcagcggaa acaacaggag ggtgagtccg tacaacaata cgttgctgca       480
     ctaaggaaac tcagtataca ttgcaagttc ggcaattacc tcaacaccgc cttgcggaac       540
     caactggttt tcgggctgcg aaataaaaag gctcaaagtc gattgctgga aaagagtgat       600
     ttggacttcg aggaggccgt tagaatcgca gttacaatgg aactctccga caagagctct       660
     gcgcagatga aggatactaa tacagaggct gccagcgtgg actacctcaa ggcaggcaag       720
     aaaccttcga ggaaaaatgc aggtgataaa aggccgatgc agatggccac gaaagacgat       780
     aattacatcc gtaataataa taataagttt tctaaccaat acaaaaactc taacataaaa       840
     tgttacaggt gcggtaaggg ccatttggca aataaatgta atattgatag aagtgtacgt       900
     tgtcacaact gtgggaaact ggggcacttg cgtgcggtct gcttcagagc tacgtccttc       960
     actaataatt tggaagaaat gctcagttta gagcatgtga actaccgcga caaattcctg      1020
     ttatcattgg aaattgaagg aaagaaagtc aagttcgagt tggatagtgg agcggcggtt      1080
     acagtcatgt gtgagtctga agcgatcaaa cttttcccaa cagcgaccat tcatcataca      1140
     gacttgagat taatttcgtt ttgcggccgc gcacttagat gtaagggtta tattacagtt      1200
     cgcgttaagt acaattctac aatgaaaaat ttaaacattt acttaattaa cggagttaga      1260
     atgcctctgt tagggcgaga gtggattagg caactcaatg tttatgattc attaatctgt      1320
     aatgcacggg taaataatgt aacaataaat tcacaaagca aattacaaga aatattagat      1380
     agatatcgga acattcgttc tccagaattc gcttcaatta aaaatacgca agtacattta      1440
     aaattaaaga aagatacgtc tccggttttc atgcgagctc gatcggtgcc tttcaaatta      1500
     caattgttag ttaataagga gcttgatata ctagaaaaag ccggcgttat cgaaaaagta      1560
     gagtcgtcaa aatgggctac acccattgtt ccaattttaa agaaggatgg aagaatacgt      1620
     atttgcggcg attataaagc cacgcttaat ccgcatctga ttgtcgacga gtaccctttt      1680
     cctacagtag acgagttgtt cttgaagctt gcaaacggag aaaagttttc caaaattgac      1740
     ctaaaacaag cttacctaca gttagagata gcacccgagg atcgggagtt gctaactatc      1800
     agtacatgca agggactcta taaagtaaat cgtatgatgt atggaattgc cccggggcct      1860
     actatatggc aacgcgaaat cgaaaaaatt ttgcaaggaa taccgggggt tgcgattttc      1920
     tttgatgata tcgttattac aggtagtaca gatacagaac atttaacacg actcgaggaa      1980
     ttactaagta gattacataa attcaatgtt cgtataaatc tagataagtc caagttcttt      2040
     atagataaaa tcgattattg cggatacgtg gttgacagtg ttggcataca taaagataat      2100
     cgaaaaatag aagctataca gaaaatgcct cggcctaaaa atgtgtcgga aatcagagct      2160
     tttacaggca tgatcaacta ctacggtaga tttattcaga atctaagttc tattttacat      2220
     ccattaaaca agctgctgca aaaaggagta cccttcgtat ggtctcgtga ttgtgagact      2280
     gcttttaata aggctaaagc ggcttttact agcaatcaag ttctggttca ttttaaccca      2340
     aagttacctt tggtattagc gaccgatgca agttcgtacg gagtcggagc ggtgctgtcg      2400
     caccaatatc ttgacggatc cgaaagggtc attcaatttg cttcacaaac attttcaagt      2460
     gttcaatcaa agtactcgca gatagacaaa gaggcgtttg caatcatttt tggtgtaaaa      2520
     aaatttgttc aatttctata cggaaataac ttcacgctaa taacggatca tagaccgttg      2580
     gtacaaatct tctcgccctc ttagagtttg cctatatact cagcaatgcg catgcagcat      2640
     tatgctatat ttctacaagg atttaattat aaaatcgagt ataggaaatc tgagaaacat      2700
     gctaatgcgg attgtttatc cagactccct gtggatgcgc cacaaaccat agcagacgtg      2760
     gtagatgctt atcaattaga aataattgaa accttaccgg taactgcgag taaacttgct      2820
     tatgaaaccc aaaaagacaa agacgtaagc gaattactag aagcattaca gactggtaaa      2880
     atcatacata aaacaaagcg ttttaatatt gagcaaaatg aattcggtct agtgaataat      2940
     gtaattatgc gaggttcacg cgtttatgtt cccaaaatac tacgagcgga aatattaaaa      3000
     gaattgcatt caggacactt tgggattgtc aaaatgaaaa atttggctcg aagccattgt      3060
     tggtggccag acattgacaa tgatatagag aaattagtac gtaattgcgc aaactgcaat      3120
     agtcacaaaa acaatcctcc aaaagtggaa gtacatttat gggaagcgcc atcagcgcca      3180
     atgcaacgcg tacatatcga ttttgcgggg ccattcttga gaaaaatgtt cttgcttatg      3240
     attgatgcat tctcgaaatg gctcgaagta catattgtaa gagatatcac agcaaaaact      3300
     acaattacaa aatgccggga aatctttgct gcatacggga taccacaagt gatagtaact      3360
     gataatggta gaagctccac ttctgcggaa tttcaacaat ttttacacat gaatggtatt      3420
     aagcataaac gtacttcacc tttcaatccc gcaacaaacg gtcaggtaga acgttttgtc      3480
     caaacatgta aacaagcgct aaaacgaatg aattgcgata ctacaaatgt taattttgca      3540
     ctaagtaaat tactattaca gtatagggca atgccacatg cgataactaa caaaactcct      3600
     gcggagatgt ttctcaatcg gaaaatatcc actagattag atttaatgat accagtacat      3660
     aataactcaa aactatatga taacactaca gaaaatgtga aaacattctc gtgcggggag      3720
     agagttgcgt gtcgtaacta ttccgggagc gtaaaatgga agttcggcat aatatcggca      3780
     agaaaaggaa aactacacta ttcaattcgg ctggatgatg gtcgctcttg ggaaagacac      3840
     gctaatcaaa tgcgtaaaat aggcgaaaat actccaacga gttgtacgga gaacgatcac      3900
     tattactggg acattgaaga gtctcgggaa ccggaatgcc cgagcgtttc cccatcatca      3960
     aatacggaga atcatctgga cgcgcctcaa aatgctgcgc cagtttcccc acagagtaat      4020
     ataggcgtag atgcgagatc tgaagtggaa gctcagcggc gttcggttag atataagaag      4080
     cgtccagatt tcttttccga atgtacagca aaatacaaca agtaggaatt ttctttacga      4140
     gagaagg                                                                4147
//
ID   Gypsy-16_SI-LTR repbase;    DNA;    INV; 310 BP.
XX
AC   AEAQ01025185;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_SI_;
KW   Gypsy-16_SI-I; Gypsy-16_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-310
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01025185; Positions     937     628.
XX
SQ   Sequence 310 BP; 78 A; 72 C; 75 G; 85 T; 0 other;
     tgttatgtat gtgtgtacat cagtttaata cgcgcgctca agatctacac ttctagtagc        60
     gcgcacgcct aaagctccgc gaataggctc gcgacacgcg tgcgacgatc gcgaatcgag       120
     caggattagg gagatgtcgc gaggagcgtg cttgacaggg agaagacgga agtccacatt       180
     gattcgagat ccttcgtaca cacacacact cgctgtaacg gttgtcggac attttcctaa       240
     atatagtgct gtttaattat tctgcgcctt ctgagttttt ctttatggcg atttccttaa       300
     atacacaaca                                                              310
//
ID   Gypsy-16_SiCu-I repbase;    DNA;    INV; 9078 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-9078
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5040-5040 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..2194
FT                 /product="Gypsy-16_SiCu-I_1p"
FT                 /note="zinc knuckle."
FT                 /translation="MKKQKSADPARSLTRSRSRLSQLFTPSDPVQIEREIR
FT                 RQQRETKAPRLVPPVXNLAEDAFSRGLLRPVGPPVFPSSLYSPSAPPLSAT
FT                 PSEAGDERTERVEKRKADSSEKGNNSDEEFASAEASPVRLTREEFDPAPTI
FT                 ESPSQLVFSGDSYIPSAFIPRRPSTLNPFPDYPNLFRTASAPTNPLFTPNP
FT                 QPSTTPHKPPTPPPRTKKTPPQPPPKPPKAPVIVTTAPTSTTTAMPKGGGA
FT                 GGGGGAGGGGGGGPAGPIVAPVAYIPHLHFGPGSGNVRQFLELYEIIGDSY
FT                 HWDDKQKARNLMMHISGPMLDCYRSYIADQVTIGKHADEAAFWASSIKWED
FT                 FRKHLQDGFSVQDTDESIRRQVEGTRYEKFASASEYYHSMVRLLQRLEPNM
FT                 RDDVRVSYLVKGLPKSLGRDIYLKSPRTPKDVFDYLQKYERFAAMMGQRDQ
FT                 VHLLEEGVVDEIKKLVLDTKEEINEELNLIKERYKGPPKKEFLGGKGKQAD
FT                 PENQNRQHLGKKKKGKSRAAKMHMATPIIQLQYPNWPPQFPGADGNAHFKN
FT                 NKPRQRQGYPVRPQGRQTQGRMNQGDKMRNVTCYSCNQQGHYAYNCPHVSR
FT                 QGN"
FT   CDS           6148..8505
FT                 /product="Gypsy-16_SiCu-I_3p"
FT                 /translation="MTPRFLVLGILSILLSPMKAESEDGPSALTHVIRPSA
FT                 GIYVTPVRSGTYVYSQTIPIIFRANFSFPHALLFDHESYYKYCGKNHTTLE
FT                 AACVVISDLMNHILNTEVRLKALQVGLTSLVVNSHKVGIFENDLTNIPVST
FT                 TTTTTTTTTATYHDDYDDSEEKTRNDTETGRKKRQILLGALGAAAGYKLYD
FT                 YFFSEPTAEDIYNEMRKGINHVQDGLLKLATSQNTVYQKIEFQMRIASENF
FT                 NKYAQENKAQQAALYKSLHAGELRIFILLSQLANMIERLTFLVEYEGILNA
FT                 CKDSKIPMDLVPETQLTRELAELSSKLYQHGLALVIPYDRTSPYYHFPLAH
FT                 CQFNVYRKXITVVVEIPIRRKDHRFRMLRTRTIPFLFKDQICRIKHSPDYV
FT                 VLLNRRPIVVEGAPSHRCNPXLGYCNFEDHGDDPSLGSVCTRALVSGSDVK
FT                 TIIQTCPYECRPGTKHDVVVTLLDETQHLYALTNIPKTTTIQCFDDFTLES
FT                 DLQSAVHKVIDSNHPPGSFLISLPCSCKIVIFPHTLEISPPFPCRLNNLTI
FT                 PEVHLLIPYRWSKVPYNTTLKALSISEELEKTDTYPNVTSLFNPNWHRGEY
FT                 VLNYTKYKFRKVEDFGDHVRTWHEVYLLYINLIWNFFITLILFTVCCSSEN
FT                 LRVRMFPTVYSAVNQVAPVHGCETDIGHKLLILMISVGILDIILISGFLIL
FT                 LYFYFRIKWTKSGAGCVYHSGVSIENLYRPATSSSRQPTNPDLRNPSEVYA
FT                 VPSTSTQRQPLIYPNIGHPILAMHHQQQTNQPSTN"
FT   CDS           2167..6138
FT                 /product="Gypsy-16_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LPSCFQTGKLEEVMVQEGPIAECNELNPSTLTPMLLF
FT                 TVIKVCGKSTIALLDSGSSLSIISRALLENLQKFYKVFSQKQVVENGSIDL
FT                 FRLKAPNDVPCEPVTFNSITGINQLKRSVTLFINIGNRIVYHDVYVSEKSK
FT                 RDLILGNDFLRKFKPVINYADESVTFTVPCKSFHQIFLDITEAEEQRAREE
FT                 QWLERKLVDNDQFNPIIVSSDGSLNRIPVMARKKSKIKPQAYFSLPIYYQE
FT                 EMACPSDLHLFEFSTSVLEKSGLLTADMMVQPQIFSQLPLLNCNDSEVTIY
FT                 PNTCVGYLSKINEVYSFSEPLPLPSENIRGTFKNRKFTDEQIKGLDINPSL
FT                 TTEDKMKLVKLLRKYPDCFSFSGNDVGTFHDSNSRDNEVKIETGDHPPISL
FT                 RPNRFSFTERDIIANEIQELESRGIIRKSASPWGFPVVLTPRRDDPTRPRL
FT                 CVNYIRLNAISEDIIYPLPPISDIFEILKGVNYISKLDMASGFHQIKMHND
FT                 SIPKTAFVVQNAKFEYIRMPYGLKQAPSIFAKVMKNVFDQLLYKGLYIYVD
FT                 DCVIYSQTFDKHLELLNNFLSKIRSVGMTLRASKCSFAHHTMKILGYIVSK
FT                 QGMIPDPDKIKAIYEMPIPTTVKEVKSFLGCCGFYRRWIENFSTIAYPLNY
FT                 LTRQDTPFIWTPECDESFRALKEKLTTAPILVQYDHSKDLELHADSSLYGL
FT                 GAVLMQRDEQNRPRVVAYASRTLNPAERAYSTFEREALAIVWAIQYFREYT
FT                 FQNKIIVKTDHHSLCSLMKLSTPRNARLCRWISILMDVNIVVQYQSGKTHM
FT                 PADCLSRLLPVDQSAKKEGTVNTDQLHPTSYDEILASEEMKDFRSIFLLSI
FT                 KEDPQWKELYRELDKQKLKYNDNFRIINGLLYHVDKESRKHRIVIPKALIP
FT                 NLLKAYHDPPYSIHCGRDRMLAKLQQRYYWTTMTSDIENYVKSCALCAQRK
FT                 PFNVSRAGLMQPHEILHPFQKVYLDLLGPLPVSNPGQYQYIMVMVDSATRY
FT                 VIAQPARSANAQTLSKFIINHLFLVHSCPKEIVMDNASINRSSLIDNILKS
FT                 FGTAPAFTSPYSSQGNSPVERQMRNINEALSHYVQSNTKDWSLYLPAVIFG
FT                 INTSKHRGLQFTPFYLTYGRSPVFPQDLHFPDAIPLNFPDDYLTKLASART
FT                 MAQHHMIRSQDYSSGLYNKRHRDVSFQKGDRVMIEFPNLAELSAARKLSKK
FT                 FSGPFTITAVKDKLNYLAVSDHPNAEPIRVHVKRIKPFRDRPEHLQPHELP
FT                 VVNSATSVDQQHSQSVSDSVNLQPPFVADGTHTLAAEDELPTTSTEGYRTR
FT                 AGRLVKPNPRYK"
XX
SQ   Sequence 9078 BP; 2919 A; 1807 C; 1758 G; 2584 T; 10 other;
     taaaactggc gawtaagctg ccgacggatc tcctttcttc tgtcgttgtg gacaactctt        60
     cttttggggg gatagaccct gatcaagtct tccttcgccc cgtgctcgaa attcatctct       120
     tcaactatta gactttcagt ttcgtctgta ttgtgaaatt ttgaacttga ttcgtttgaa       180
     gtaagagcag aaacttgcta gctagctawa caacaaaaaa agttgagtga gtgagcagag       240
     agaaattgtt gctgttgttg gattccatca ccaccaccac caacaattca caatagaggt       300
     wctactccga gcagcttcca ggactgttcg taaaagtaat tggcgtcacc aaggtaagga       360
     atgtatttcc acatttctaa aataagtctt tatgaaaaag caaaagtctg ccgatcccgc       420
     acgtagtctt acacgtagta ggtcaagact atcgcagctc ttcacaccta gtgatcccgt       480
     gcaaattgaa agggaaatta gaaggcagca acgtgaaacc aaagcaccac gtctagtacc       540
     accagttaka aatttagctg aagacgcatt ttctcggggt ttattgagac ctgtaggacc       600
     acctgtattt ccttcatctt tatactctcc atctgcacca cctttaagtg ctacaccttc       660
     tgaggcaggt gatgagcgca ctgaacgagt agaaaagcga aaagcagaca gttcagaaaa       720
     aggcaataat tccgacgaag aatttgcatc agcagaagct agtccagtta gactaactcg       780
     agaggagttt gatcctgctc ctactatcga gtcaccatct cagttagtat tttctggaga       840
     tagttatatt ccatcagctt tcatcccacg tcgcccctca accttaaatc cttttcctga       900
     ctaccctaat ctatttagga cagcgtcagc acccactaat cctctcttca ccccaaatcc       960
     tcaacccagt actactcctc acaaaccacc cacacctcca ccgagaacaa agaaaactcc      1020
     acctcaacca cctcctaagc caccaaaggc accggtaata gttaccaccg cgcctacctc      1080
     caccaccact gcaatgccta agggaggagg agctggagga gggggaggag caggcggagg      1140
     gggaggagga ggaccagcgg gaccgattgt agctcctgta gcttatatcc cacacttaca      1200
     ttttggtcca ggttcgggga acgtgagaca gttcttagaa ctttatgaga tcatagggga      1260
     ttcataccac tgggatgaca aacaaaaagc taggaattta atgatgcata tttcgggtcc      1320
     tatgttagat tgttatcgtt cttacatagc agaccaggtc acgataggaa agcatgctga      1380
     tgaagcagca ttttgggctt ccagtataaa gtgggaagat tttaggaaac atttacagga      1440
     cggatttagt gtgcaagata cggatgagag tatacggaga caggttgaag gcactaggta      1500
     cgagaagttt gcatctgcca gtgagtacta ccactcaatg gttaggttac tacagaggtt      1560
     agagcctaac atgagggatg acgtaagggt ttcatacttg gtgaaaggac tccccaaatc      1620
     cttagggcga gatatctact tgaaatctcc cagaacgcca aaagatgttt ttgactattt      1680
     gcaaaaatat gagagatttg ccgccatgat ggggcaacgc gaccaggtgc acctccttga      1740
     ggaaggagtg gtcgatgaga ttaaaaagtt agtattggat actaaagaag aaataaatga      1800
     ggaactgaac cttatcaagg aaaggtacaa agggccgcct aagaaggaat ttcttggtgg      1860
     gaaaggcaaa caagccgacc ctgaaaatca gaataggcag catcttggga aaaagaaaaa      1920
     ggggaaatcc cgagctgcaa agatgcatat ggcaactccg atcatccagt tacaataccc      1980
     gaattggcca ccgcagtttc ctggagcgga tggtaatgcg cattttaaaa acaataagcc      2040
     taggcaacgg caagggtacc ctgtgaggcc ccaagggagg cagactcaag ggaggatgaa      2100
     tcagggagat aagatgagaa atgtaacatg ttactcttgc aatcagcaag gccattatgc      2160
     ctataactgc cctcatgttt ccagacaggg aaactagaag aggttatggt acaagaggga      2220
     cccatagccg aatgtaatga attaaacccc tcaaccctta ctccaatgtt gttatttact      2280
     gtgataaaag tttgtggaaa atctactatt gcattattag attcgggttc atcactgagt      2340
     attatttcta gagcattact agaaaacttg caaaaattct ataaagtgtt ttctcagaaa      2400
     caagtagtag aaaatggtag cattgattta tttcgattaa aggctcctaa tgatgtgcca      2460
     tgtgaacctg tgacatttaa ttcgattacg ggaattaatc aattgaaaag aagcgtaacc      2520
     ctgttcatta atatagggaa tcgaattgtt tatcacgatg tttacgtgag tgaaaaatca      2580
     aaaagagatt taatattagg aaatgatttc cttcgcaaat ttaaacctgt cataaattat      2640
     gcagatgagt cagttacgtt caccgtccca tgcaaatcat ttcatcaaat tttcctcgat      2700
     attactgaag cagaggaaca gagagcaagg gaggaacaat ggttagaacg gaaactagtg      2760
     gataatgatc agtttaatcc cataattgta tcatctgacg gatctctgaa tagaattcct      2820
     gtgatggcta gaaaaaagag taaaataaag ccgcaagctt atttctctct acccatttat      2880
     tatcaagagg aaatggcctg tccatcagat ttacatctgt ttgagtttag tacatccgtt      2940
     ttagaaaaat caggattgct gacagcagat atgatggtac aacctcaaat attttcacaa      3000
     ttgccattgt tgaattgcaa tgatagtgag gtaactatat atcctaatac gtgtgtcgga      3060
     tatctgagca agataaacga ggtctacagc ttcagtgagc ctctcccatt gccatctgaa      3120
     aatatcagag gtactttcaa aaataggaag ttcactgatg aacagataaa aggattagat      3180
     atcaatcctt ccctcacaac agaggataaa atgaaacttg tgaaattatt gagaaaatat      3240
     cccgattgtt tctcatttag cggaaatgat gtaggtacat ttcatgactc aaattcaaga      3300
     gacaatgagg taaaaattga aacgggtgac catccaccta tttcattaag gccaaataga      3360
     ttctccttta ctgaaagaga catcatagca aatgaaattc aggaattaga gagcagaggt      3420
     ataatcagaa aatcagcttc gccgtgggga tttcctgttg tattaacacc caggcgagat      3480
     gacccaactc gaccgaggct ttgtgtgaat tatatcagat taaatgctat atctgaggac      3540
     atcatctatc ctttacctcc tatttcagat attttcgaaa ttctgaaagg tgtcaattat      3600
     atttcaaagc ttgatatggc tagtggcttt catcagatta agatgcataa tgattccata      3660
     ccgaaaacag cttttgttgt gcagaatgcg aagttcgaat atatccgcat gccttatggg      3720
     ttgaagcaag cacccagcat atttgctaaa gttatgaaaa acgtatttga tcagttgtta      3780
     tacaaaggac tctacatcta tgttgatgat tgtgtgattt acagtcaaac ctttgataaa      3840
     catctggaat tgttaaataa cttcctttct aaaatacggt cagtaggcat gacgctcaga      3900
     gctagcaaat gtagctttgc ccatcatacg atgaaaatcc ttggctatat tgtctcaaag      3960
     cagggaatga taccagaccc tgataaaata aaggcaattt atgaaatgcc aattccaaca      4020
     actgtcaagg aagtgaagtc attcctaggt tgttgtggat tttatcgcag atggatagaa      4080
     aattttagta ccatcgcata tccattgaat tatctgacaa ggcaggatac tccttttatt      4140
     tggactcccg agtgtgatga gtcatttaga gcattaaaag agaaattgac aactgcaccc      4200
     atactagttc agtatgatca tagcaaagat ctagagcttc acgcagattc atcgctttac      4260
     ggattaggcg cagtgctcat gcaaagagac gaacagaata gaccacgcgt agtagcttac      4320
     gcttctagaa cgttgaatcc ggcggaaagg gcgtactcca cctttgaaag ggaagcttta      4380
     gcaattgttt gggcaattca gtatttcaga gaatacacat ttcaaaataa aattatcgtg      4440
     aaaacggatc atcattcctt gtgttctctc atgaaattgt ctacgcccag gaatgctaga      4500
     ttgtgcagat ggattagcat tttaatggat gttaatatcg ttgttcaata tcaaagtggt      4560
     aaaacacata tgccagcaga ctgcctgtct agactacttc ctgttgatca aagcgcaaaa      4620
     aaggaaggta ctgtgaatac cgatcaactt catccaactt cctatgatga gattctcgca      4680
     tcagaggaaa tgaaagattt tagatctata ttcctactga gcataaaaga ggatcctcag      4740
     tggaaagaat tatatcgtga gttagacaaa cagaaattga aatacaatga taactttcga      4800
     attatcaatg gacttttgta tcatgttgac aaagaatcta ggaagcatcg cattgttatt      4860
     ccgaaagctt tgattcctaa tctactgaaa gcttatcatg atccacctta ttcaattcat      4920
     tgtggacgtg atcggatgtt agcaaaattg caacagcgtt attattggac tacaatgacg      4980
     tctgatattg agaattacgt taagtcgtgt gctctttgtg cacaacgtaa gccatttaac      5040
     gtaagtagag cgggcttgat gcaacctcat gaaatattac acccatttca gaaggtttat      5100
     cttgatttgt taggccctct tcctgttagt aacccaggac aatatcagta tatcatggtt      5160
     atggttgata gtgccacgag atatgtcatc gctcaaccag cacgttcagc gaacgcacag      5220
     acgctttcaa aattcattat aaatcatttg ttcttggttc actcatgtcc aaaggaaata      5280
     gttatggaca atgcttcaat taacagatct tcattaattg ataacatttt gaaatcattt      5340
     ggtaccgcac ctgcgttcac atcaccctat tcttctcaag ggaatagtcc ggttgaacgc      5400
     cagatgcgaa atattaatga ggctttatct cattacgttc aaagtaacac aaaagattgg      5460
     tctttatatc taccggctgt tatcttcggc attaatacgt cgaaacaccg cggactacaa      5520
     tttacgccat tctatttaac gtatgggcgt tccccagtgt ttccgcagga tttacatttt      5580
     cctgacgcca ttccattgaa ttttcctgat gactatctga ctaaattagc atcagcacgg      5640
     acaatggcgc agcatcatat gattcggtct caagattata gttccggctt gtataataag      5700
     cgacaccgag acgtgtcttt tcaaaagggg gatagagtca tgattgaatt ccctaatctt      5760
     gccgaactat ctgcggctcg taagctttca aaaaagtttt ctggtccatt cacaattact      5820
     gctgtgaaag ataagctgaa ttatctagcg gtctctgatc atccgaatgc tgaacctatc      5880
     cgagttcatg tgaaacgcat taaaccattc cgagatcgac cagagcattt acaaccgcat      5940
     gaattaccag ttgttaatag tgctacttcg gtagaccagc aacattctca gtctgtttca      6000
     gattcagtca atcttcagcc accattcgtc gcggacggaa ctcatactct cgctgcagaa      6060
     gacgaacttc caaccacctc aactgaaggt taccgtacca gagctggacg tttagtaaaa      6120
     cctaacccta ggtacaagtg agacaacatg acacccaggt ttcttgtctt gggaatcctc      6180
     tccattctcc tttctccaat gaaagcagaa agtgaagacg gaccgtcagc attgactcat      6240
     gtcatacggc ctagcgcagg tatctacgtt actccagtaa ggtcaggaac gtacgtttat      6300
     tctcaaacca ttccaattat ttttcgtgca aatttttctt ttccacatgc attactattt      6360
     gatcatgaga gttattacaa gtactgtggg aaaaatcata cgacactaga agcagcatgt      6420
     gttgttatat ctgacttgat gaatcatatt cttaatactg aagttaggtt aaaagctctt      6480
     caggtagggt tgacgagtct agtagtgaac tcacataaag taggaatttt tgagaatgat      6540
     ttaacaaaca ttccagtgag tacaaccacg actacaacta cgactacaac tgcaacctat      6600
     catgacgatt acgacgattc agaagagaag actagaaatg atacagaaac aggtcgaaag      6660
     aaaagacaaa tactgctagg agcactaggt gctgcagcag gttataaatt atatgattat      6720
     ttcttcagcg aaccaaccgc agaggacata tacaacgaga tgagaaaagg catcaatcat      6780
     gttcaagacg gtttattgaa attagctact tctcagaata ctgtgtatca aaagatagag      6840
     tttcagatga ggatagcctc agagaacttt aataaatacg cacaagaaaa caaggcgcaa      6900
     caagccgcgc tctataaatc gctccatgca ggagaattaa gaattttcat tcttctttca      6960
     caattggcaa acatgataga aagattaaca tttcttgttg agtacgaagg catcttaaat      7020
     gcttgtaaag attcwaaaat tccaatggat ttagttccag aaactcagct taccagagag      7080
     ttggctgaat tgtcaagcaa actatatcaa cacggattgg cattagtaat tccatatgat      7140
     aggacttcac cctactatca ttttccatta gctcactgcc aattcaatgt ttacagaaaa      7200
     wccatcactg ttgttgttga aattcctata agacgaaaag atcatagatt cagaatgcta      7260
     aggacaagaa ctattccatt tctttttaaa gatcagattt gtagaattaa acacagtcca      7320
     gattatgtgg tacttcttaa cagaagaccc atcgttgtkg aaggagcacc ttcacaccgg      7380
     tgtaatccaw mcttaggtta ttgtaatttc gaagaccatg gagacgatcc aagtttaggt      7440
     tctgtatgta ctagagcatt agtctcaggc tccgatgtca agactataat tcaaacatgt      7500
     ccttatgagt gtaggccagg tacgaagcat gacgtcgtcg ttacgttact agacgagacg      7560
     caacatctat acgctctgac taacattcca aagactacaa caattcaatg ttttgatgat      7620
     ttcaccttag aatctgattt acaatcagcc gttcacaagg taatcgattc aaatcatcct      7680
     ccgggtagtt ttcttatttc cttaccctgt agttgcaaaa ttgttatttt ccctcatacc      7740
     ttggaaatct cacctccttt tccatgtaga ttaaataatt taaccatccc tgaagtacac      7800
     cttttaatcc cttatcgttg gtccaaagta ccgtataata ctactctaaa agcgttaagt      7860
     atttcagagg agctggaaaa aacagataca tatccaaacg ttacttctct attcaatccc      7920
     aattggcata gaggcgaata cgtattaaac tacacaaaat ataaatttag aaaagtcgaa      7980
     gattttggtg accacgtcag aacgtggcat gaagtatatt tactttatat taatttaatt      8040
     tggaactttt ttattacgtt aattcttttt acagtgtgtt gttccagtga aaatttaagg      8100
     gttcgtatgt ttccaacagt ttacagtgca gtcaatcaag ttgcccctgt acacggttgt      8160
     gagacggaca ttggtcataa gttgttgatt ttaatgattt cagtaggtat attagacatt      8220
     attttaatat caggatttct aatattactt tatttctact tcagaataaa atggacaaaa      8280
     tcaggcgcag ggtgtgtata tcactcaggt gttagcatag aaaatctcta ccgcccagcc      8340
     acatcatcat ccagacaacc aaccaatcca gacctcagga atccttcaga agtgtacgca      8400
     gtacccagta catcaactca acgccagcca ctcatttacc ccaacatcgg acatcctata      8460
     ttggcaatgc atcaccaaca gcaaactaac cagccatcta ccaactaaca aaatttacat      8520
     ctaccaawtg cagactaaat attccgggac actactcctc tccgtaacaa tcagtaatcc      8580
     caaacggtca aagaaaaaat atggtagtaa taaaatagtt gagtacacaa ttttcaatta      8640
     acaaaatttt gtatgaactg aaaaaaaatt attttgttat catttcatgt atgcacattc      8700
     atgtaacaag cttcttcgaa aaaaactttc acgcgaaact ttgttttgtt taaagtttca      8760
     tgtcatattt gtatggtata cactaattcc ttattatgga aatgttagac atatgtacct      8820
     ctacaatgta cccttacaat gtctcattca gtgttaagct ttgagtatga cataatgatt      8880
     gagttatgaa gtatgtatga aaaatgtcat taatttttct tgctgactta tattgcaaac      8940
     tgcaaaactt ttttttgtga aaaaaaaatc tgttgatatg aatgtaaaac tcaaaattag      9000
     aattgaatgt gttacgtgga aaacctaatg ttactaaagt atagtaaagc aaagggactt      9060
     gctttttata ggggatgc                                                    9078
//
ID   Gypsy-16_SiCu-LTR repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-693
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5093-5093 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 693 BP; 245 A; 128 C; 109 G; 206 T; 5 other;
     tgttgacggg atcaataatt kgtaatatta taacgtcaca cattaattat tggtagcagc        60
     aatawtgatt gcamaatcat attgcacaat aatgttctaa aaataaaatg taaataaaaa       120
     atgaggacaa ataagtgcag cggatgcatc atcgtcatca tcatcgtcgc tgaccaccaa       180
     cgctatcaaa tcagtgcatc tcgactccaa caccggaagt caggacccac accggatgcc       240
     cagctgtcaa tcatcgatgg agatcatcat ctcatcaggg cttggctggg acaggtaaca       300
     tcggttaggt tagatggaaa gttagattaa cttagttaaa taaataggta aatcagatag       360
     caaggtaatt ggtaatttct atagaaactc ttctaggttg aatgtatact atgattatat       420
     ggtaatctaa ttagatgctt tatataagta tagtatgtaa gcaatcaaca ttgtcaatca       480
     wtattattaa ttattacgat tctaacaaaa gagcacaaaa ctattcttgt ccaaaataat       540
     atccaaattt ctactttgtg aaatttgtca ttaatataaa tacgcagtca gaacaattaa       600
     aaatccagta gtaatcttct actcttctgc ctcacgactc actcctgctc attmgtacat       660
     tattacttca tcatcagcac catacgtgca aca                                    693
//
ID   Gypsy-16_SiOr-I repbase;    DNA;    INV; 5412 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5412
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 352-352 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1076..5395
FT                 /product="Gypsy-16_SiOr-I_1p"
FT                 /translation="MATLGDLERIEHNITNSKLKAVKALHFIAYGNEGQPR
FT                 LIRKNLRKFNGFRLDVDSDEYARKIDDIKKQVPLNDLTAVCHILNLDYDGD
FT                 IDQILDRVCLFLNDLTVNVKDDESESEIEEEEEDEDETEEEVEEEVNNQAG
FT                 RNIRSQAKAIRNEAFALTFRDVEDSIRPFDGKDSYPINKWILDFEEIADIT
FT                 GWNELQKLIFAKKSLRGLAKLFVQSEKGIKSWKVLKRKLLEEFEVKVSSAQ
FT                 VHKLLMARKKEHKETVQEYVLVMREIGSRALIEPEVIIQYIIDGINDDSSS
FT                 KIVLYGAKNFSELKEKVKLYEQIKTKKNPNSFSSHTGKPNFTQYSSMKSGL
FT                 GKNEVKKEFGKEVKKENDGTKPKNCFNCGERGHKSQECPNKDKGVKCFKCN
FT                 TYGHISTKCTKNGSTNQSSSGQTSTSVHTIQAVPKHSVKITIDDIQLIALL
FT                 DTGSDICAIRDDIYEKHLRHIPLIKDNIVVTGIGCNKIKTLGLFKKRVAIN
FT                 EEEMELTFHIIPRETSSFAAIVGNECLSIVDISIRNNVVEIYKKEQTNFLM
FT                 EIRMDKETDANNLDLEHISEDRYRNELREIVNNYKPAKTKEVDIKMKIILK
FT                 DEEPVYERPRRLAVEEKTIVEEQIKAWLEEGIIKPSCSEFASPIVLVKKKC
FT                 GATRICCDYRKINKKIIRDRFPLPLIEDVLDTLQNAKYYSTIDLRNGFFHV
FT                 SVEEESTKYTSFVTPNGQYEFLKCPFGLCNSPAVFQRYVSHIFLPLTVKNI
FT                 AVYYMDDIIIMSSTVEEGLERLKLVLDLASSYGLQIKKNKCQFLREKVIFL
FT                 GYIIEDGHVQPSDEKSLAIKRFPEPRTFKQLQSFLGLTGYFRKFIASYASI
FT                 AKPLSDLLKKDQVFTFGDIQKAAFEKLKTLLSSKPVLYLYRQDCETQLHTD
FT                 ASKHGYGACLMQKFPEDDKFHPVYFMSRKTTPAEEHYHSYELEVLAIIQAV
FT                 KKFRIYLLGIPFKIITDCAAFEKTMSKRDLTTRVARWALLLEEYEYKIEHR
FT                 SGSRMAHVDALSRCPEVRVYQISKQEDGLLQRLKLAQKEDDYIQAIRKICQ
FT                 KEDYQDFVVKNNILYKYDSGLDLIVVPKRMQYEIIRRAHEVGHFGAVKTEE
FT                 LVKREFFINKLKDKVQNCIRNCIKCILGNKKEGKKEGLLHSIAKPDEPLMT
FT                 YHVDHLGPLPSTNKQYRHIFAVIDDFTKFVWLYPVKSTTSRETIDKLKIQQ
FT                 KTFGNPFRIISDRGTAFTSNEFREYCDEENIQHVTITTGVPRGNGQIERIN
FT                 RTIIPVFTKLSLDDPSKWYKHVDQVQRALNSTIQRSIDASPFEVMMGVKMK
FT                 CKEDVLIREMLEKEAVDIFQEKRQEIREEGKKQILKVQEENKKHYNLRRRQ
FT                 PKKYHVGDMVAIKRTQFGPGLKFHRQYLGPYEVSKCNLNERYEVVKVGHSE
FT                 GPSLTTTCAEYMKPWVETGSESESDS"
XX
SQ   Sequence 5412 BP; 2029 A; 730 C; 1112 G; 1541 T; 0 other;
     tttttggggc ctcaaccgag atagtgcagc aagctgaagt gttatagtgc aagtagagaa        60
     gaaaattggt gtaaaattaa cggcgcaaga actgaagtgg aaatgtacca gcttttacca       120
     gggcagtagg taaaataatg gtttatgttg gatgaggata ttttccagtg gtaacacgat       180
     aacgcagtaa tttaaaaagt tgaagttaaa gactgatgga caggtatgat gcatatttgt       240
     tattattctc cattgacatt ttctacaaag tataaatact cattttaagc agtgaaatat       300
     tgaaagacga taatagacag gttgttttgt tattattctc aattgacatt ttctacaaag       360
     tttaaatact cattttaagc agtgaaatat tgaaaaacga taacagacag gttgttttct       420
     ttgctgttta tattttgttg tagatatagt gacagatccg taatgtttga ttttcattta       480
     gttattttat gttttagtat aagttatttt aaaatttagt atctactgac tgctaaaatt       540
     ttagaaattt gattgctaca ttgctaatca aaattgtgtt tatttaattt ctaaacctat       600
     agaatggttt tctcaatgtt attttctttt tttctaagcc ataaattaaa atatgtaata       660
     tttttagcgt gtaaacatta atctgtaaga tgtttagata agttatgtga ggtgcacatt       720
     ttatctaatt tgttcatttt aattttagag ttttgaacca aatgctccaa tatacagtct       780
     atatggtata atatatatgg gtacaaccta cctaattttt ttgttgtttt aaaatatatt       840
     ttttttgttc tctcatatat tatgtagata ataagcagag tatttttagg tattgagttt       900
     atttaggtat tattattatt tttaggtaaa tgtaaagtag gtattcataa gttttttttc       960
     gcactttagt atgtacctct ttaaaagtat ttaagagtag agtctgtgag gatgacatac      1020
     gtcttatggc tgttggctcc tattctttaa attttggttg atcaagtaaa acaaaatggc      1080
     gacattaggg gatttagaaa gaatcgagca taatatcacc aatagtaaac taaaagctgt      1140
     caaagcctta cattttatcg catatggtaa tgagggtcag ccgcggctca ttagaaaaaa      1200
     tttgcgaaaa tttaacggtt ttcgattaga tgtagattcg gacgagtatg cgcgaaagat      1260
     agacgatatt aagaaacaag ttcctttaaa tgatttaacg gcagtatgtc atattttaaa      1320
     tttggactat gacggagata ttgatcaaat tttagatcgc gtttgtttat ttttgaatga      1380
     tttaacagta aatgtgaaag atgatgagag tgaaagtgaa atagaggaag aggaagaaga      1440
     tgaagacgaa acagaggagg aagtcgaaga agaagtaaat aatcaagctg gaagaaatat      1500
     tcgtagccaa gcaaaagcaa taagaaacga agcgtttgct cttactttta gagatgtcga      1560
     agatagcatc cgaccgtttg atggaaagga tagttatcca ataaacaaat ggattttgga      1620
     tttcgaagag attgcagaca taaccggctg gaacgaactg caaaaattga tatttgcaaa      1680
     aaagtctttg agaggattag caaaattatt tgttcaatca gaaaaaggaa ttaaatcgtg      1740
     gaaggtactg aagagaaaat tgttagaaga atttgaagta aaagtaagca gtgcgcaagt      1800
     gcacaagtta ttaatggcga ggaagaagga acacaaagaa acggttcagg aatatgttct      1860
     agtaatgagg gagataggaa gtagagctct gatagaacca gaagtcatca tacagtacat      1920
     aatagatgga attaacgacg attcatccag caaaattgtc ctttatggag ctaagaattt      1980
     ttcggaatta aaggaaaaag ttaaacttta tgaacaaata aaaacgaaga aaaacccaaa      2040
     tagtttcagt tcccatacag gaaaaccaaa ttttacacaa tactcaagta tgaaatcagg      2100
     acttggaaag aacgaagtaa agaaagaatt tggtaaagaa gtgaaaaaag aaaatgacgg      2160
     aacaaaacca aagaattgtt ttaactgtgg agagcgagga cataaatctc aagaatgccc      2220
     taataaggat aagggtgtaa agtgctttaa gtgtaacacc tatgggcata tctcaactaa      2280
     gtgtacgaaa aatggttcca caaaccaaag ttcttcaggt cagacaagta cctcagtaca      2340
     cactatacaa gctgttccaa aacattcagt gaaaataact atagatgata tacaactgat      2400
     tgcattatta gataccggaa gcgacatttg tgcaataaga gatgatattt acgaaaagca      2460
     cttaagacat attccactaa ttaaagacaa tattgttgtg acaggaatag gatgtaataa      2520
     aataaaaacg ttgggattat tcaagaaaag ggttgcaata aatgaagagg aaatggagtt      2580
     aacatttcat attattccta gagaaacttc cagttttgca gctatagtag gaaacgaatg      2640
     tttgagtatt gtagatatca gtatcagaaa taatgtagta gaaatataca aaaaagagca      2700
     gactaacttt ttaatggaaa tacgaatgga taaagagaca gatgccaaca acttagacct      2760
     agaacacata agtgaagata gatatcgaaa tgaattacga gaaatagtaa ataattacaa      2820
     gcctgcgaaa acgaaagaag tagacataaa aatgaagatt atattaaaag atgaagaacc      2880
     agtttatgaa cgtccaagaa gattagctgt tgaggaaaaa actatagtag aagagcagat      2940
     aaaggcttgg ttggaagagg gaatcattaa accaagttgt tcggaatttg caagtccgat      3000
     agttttggtg aagaaaaaat gcggtgccac cagaatttgt tgcgactata ggaaaataaa      3060
     caagaaaata ataagggata gatttccttt gccccttata gaggatgtac tggatacact      3120
     tcaaaatgcc aaatattata gcactattga cctaagaaat gggttctttc atgtgtccgt      3180
     tgaagaagag agtacaaagt atacgtcgtt tgtgacacct aacggtcaat atgaattttt      3240
     aaagtgtcca tttggtctct gcaatagtcc ggcagtattc caaagatacg taagtcatat      3300
     atttttacca ttaacggtaa aaaatatagc tgtgtactac atggacgaca ttatcattat      3360
     gagttcaact gtcgaggaag gattagagag actaaagtta gttttggatt tagctagtag      3420
     ctatggatta caaatcaaga aaaataaatg tcaattttta agagagaagg taatttttct      3480
     tggttacata atagaggacg gacatgtaca accatcagat gaaaaaagtt tagcgatcaa      3540
     aagatttcca gagcccagaa catttaagca gcttcagtca ttcttaggat tgacgggata      3600
     tttccgaaaa ttcattgctt cttatgcatc gattgcaaag ccgttaagcg atttgttaaa      3660
     gaaagatcaa gtatttacat ttggagatat tcagaaggca gcgtttgaga aattaaaaac      3720
     cctattatct agtaagccag tactatactt atacaggcaa gactgtgaaa cacagttaca      3780
     cacggatgca agtaagcatg gttacggcgc atgtttaatg cagaaatttc ctgaagatga      3840
     caagtttcac cccgtgtatt tcatgagtcg gaaaactacg ccagctgaag aacactacca      3900
     cagctatgag ttagaagttc tagccataat ccaagcggta aaaaagttca gaatttatct      3960
     tttaggaata cccttcaaaa tcattaccga ttgcgcagca tttgaaaaga caatgagtaa      4020
     gagagacctg actactcgag tagctcgatg ggcgttacta ctcgaggaat atgaatataa      4080
     aattgaacat agaagtggca gccgtatggc ccatgtcgat gctttaagca ggtgtccaga      4140
     agttcgggta tatcagataa gtaagcaaga agatggactt ttacaaagat tgaaattagc      4200
     gcagaaagaa gacgattata tacaagcgat taggaaaatt tgccaaaagg aagactacca      4260
     agattttgtc gttaaaaata acatattata caaatatgat agtggattag atttaatagt      4320
     ggtaccgaaa cgaatgcaat atgaaataat aagaagagcg catgaagttg gacatttcgg      4380
     agcagtaaaa acagaagaat tagtaaagag agaatttttt atcaacaagc tgaaagacaa      4440
     agttcagaat tgcataagga attgcataaa atgcatcttg ggaaataaga aggaaggaaa      4500
     gaaagaggga ctattacatt caattgcgaa gcctgacgaa ccactaatga cgtaccatgt      4560
     tgatcattta ggacctttac cttcgacgaa taaacaatac agacatattt tcgcagtaat      4620
     agatgatttc acaaaatttg tctggttata tccagttaag tcaactacgt ctcgtgagac      4680
     cattgataag ttaaagatac aacagaaaac tttcggcaat cctttcagaa taattagtga      4740
     tcgaggcact gcctttacta gtaatgaatt cagggagtat tgtgatgaag aaaacataca      4800
     gcatgtgacg attaccaccg gagtacccag aggaaatggt caaatcgaac gaatcaaccg      4860
     taccattatc ccagtattta caaaattgag tctagacgac cccagtaaat ggtacaaaca      4920
     cgtagatcaa gtgcaaagag cgcttaattc tactattcag agaagtattg atgcgtcacc      4980
     tttcgaagtt atgatgggag ttaagatgaa atgcaaggaa gatgttttaa taagagaaat      5040
     gttagaaaag gaagcagtag acatttttca agagaaaagg caagaaataa gagaagaggg      5100
     taagaaacaa attctaaaag ttcaggaaga aaataaaaag cattacaatt taagaagaag      5160
     acagccaaaa aaatatcatg ttggagatat ggtggctatt aaaaggacgc agtttgggcc      5220
     aggattgaaa tttcatcgtc aatatttggg tccatacgag gtgtcaaagt gtaatctaaa      5280
     tgaaagatat gaagttgtaa aagttggaca ttcagaagga ccaagtctca ccacgacttg      5340
     tgctgagtac atgaaacctt gggtagaaac tggtagcgaa tccgagtcgg attcctagtc      5400
     agtatggccg ag                                                          5412
//
ID   Gypsy-16_SiOr-LTR repbase;    DNA;    INV; 504 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-504
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 385-385 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 504 BP; 161 A; 91 C; 95 G; 157 T; 0 other;
     tgtgggttta atttttcatc aaccttattt cctaattttt ctaataacag actatcttaa        60
     tttcttaatt ctaatactat tgcattttaa tttcaatctt cgcgggcaga gcgcaacgta       120
     cttgagatgt ccggtcgaat gtcttaggag gggattgacg cggcggcgat ataagatact       180
     gatccgatac cgttacggga cagttggcat aataattaaa agaagacggg cagccggctt       240
     ttaaggttta ggcgccaaaa agacgtattt gtgaaattaa gacgtagtaa gacgtgtttt       300
     atcattttaa gaagtaaaga cgtaaagacg tacatgccaa actgtgtaac taacgatagt       360
     agacctagta acaacaatat aagtgccgtt gtatctcatc taagtgtgcc taagaataaa       420
     cttcgcttgc taaatctata taacgaacct gtgtttcttc ttttttttaa acaatacccc       480
     tagacaactg ataaaaaccc taca                                              504
//
ID   Gypsy-16_SpEx-I repbase;    DNA;    INV; 6350 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6350
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4085-4085 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           797..5593
FT                 /product="Gypsy-16_SpEx-I_1p"
FT                 /translation="MDREETRHRVTLSPDPGAPRSEGEGREVLDSRRAKRR
FT                 ETSHETWPREFTRERRAWRPCSEQPGVSRVRDTEVECNEDFGGERQDRMMF
FT                 HMRRTEERALRTPVRSSRRRSQSADSVGHEDLREKSSSWNRLRHEDERDSH
FT                 SNSRRERKRSWSSTRGDGEQPTSSNSKRFKHLDPTNNILDKFLSVLQSIKS
FT                 SDKPKLSFNTNIVPEFDPMSKEQTILTWLTKVEECAEIYGWDDRETIHYAL
FT                 PKLTGVAKSWYQNLPTMMFKWNEWKRKLIESFPVREDYAELLTEMLAKRVK
FT                 YGESLEHYYYAKINLLNRCKIHGRQAVDCILYGVEDRAIKVGAQAAQFSEP
FT                 EQVLKYFRTVKVGNNRENRDSNSSFRADRKNAAHTTKSGSLLKITCYNCDQ
FT                 VGHPSFKCEKPAAKCTICEKLGHLSIHCFKNKRPNKDHEKGNNQSTSIKEQ
FT                 QVAQLNVAEELTAKYMINIKVNGHVLDCHLDLGSQCSLIKLSKAKELSLDI
FT                 VMPEDLPVLRGIGANLISPVGMTIVDIEVQGLEETINLYVVDDYVIKQSVL
FT                 LGHSFTEKPDIVITKTPTAVIFRKIPSVKIQLLSTKDIEIPTNTLRAVQVY
FT                 VNPYIDARVYVNGSVRGSPGEEYYLLPGDYEVRHGLSALLIHNASPNPITI
FT                 QKDSLLTRVQCKDAVDSRDFLDSCSVTISESQSNDTLNCSETLSPEEKSSL
FT                 LELIGKYKTCFSTGLHDLGFTNLTEMTIELEDEGPIVYRPYRMSYADRILV
FT                 RNMIQEMSDHGIIRESTSTFASPIVLVQKKTGEKRLCVDYRALNRKTKKEH
FT                 YPLPRIEDQLDQLAGNKVFTSLDLASGYYQIAVAEESRHRTSFVTPDGQYE
FT                 YNRMPFGLVNAPSVFQRTINKILLEAKIKYAIVYMDDVLIPARDVSEGLQR
FT                 LEEVLELLKRGGLTLKLSKCHFFLDTIDFLGFQVSSDGIRPGQRKTDAVSK
FT                 FPEPKNHHELRQFLGLSGYFRRFIVNYALIAAPLTDLLKKDVKWSWGENQE
FT                 TAFKKIKSLLVDRPVLALYNHAAETQLHTDASKDGLAGILLQANSEGVFQP
FT                 VSYFSRKTNAEEQKFHSYDLETLAVIASLNRFRVYLIGIPFKIFTDCNALR
FT                 STLVKRDLIPRIARWWVQLQEYDCTIEYRPGSRMSHVDALSRNPVDIVETE
FT                 PSTCLEVLAIENGEQDWISTVQSADDEIKKIKEMLSDPDSKNILEIHRNYK
FT                 LKNNRVYRIVGDEIKWLVPKGVRWQILKMNHDDVGHCGFDRTLQRIRKNYW
FT                 FSKMRKFVKKYVSSCLECLHHKTPGGKCEGELHPIDKPSIPFHTVHADHLG
FT                 PFIKSKKGNCYLLVLVDGFTKYVNIRPVRDTKTATTIRVFKDHISYFGVPT
FT                 RLITDRGTSFSSSSFKEFIVQTGIKHIMNAVSTPRANGQVERFNRTILDAL
FT                 STSTHGKDDRTWDEQISDIQLGLNTTTHKTTQKSPSELLFGFNVKCRTEGI
FT                 LSEILEDTVNITSPDALVDVRQDASEKIKKKQSEDRDRFNSRRKAARCYSE
FT                 GDLVRVERQVPSDGQSQKLVVKYQGPYRVLKVLPNDRYIIEDTPLSRKNNR
FT                 RYEAVVAIDKMQPWLSFSRDFSSCEEDSSGDD"
XX
SQ   Sequence 6350 BP; 2116 A; 1100 C; 1361 G; 1773 T; 0 other;
     gttcagaagt gggatcgacg aaaagattat tcctttcgat ctacgcccga ggaagacaaa        60
     ttaaaacgta agtacaaata ttccatctgt gatttttgaa aataagtttg gagtcgagtt       120
     aagtacggtt attgtgaccg gtttatgaaa taatatttca agatagtaat aagttcaatg       180
     agatttgacg cgattaagtt gataaaaaaa tgttttcatt tttttttcta ccctcatttc       240
     tttcataatg aaaataagta agtacgtgta aaacttcgaa ataaaatttt gaaatatggt       300
     cgcgttcgag taaaatatta tagctgaggc ccgtttatcg aaataacata aagaaaaagt       360
     caaaggatta ttgagattcg gtgcgatgaa ggtacctata tgtgaaaagt atccctttat       420
     tttaaacata ttacttattt tgtcatttag taaaaatgtg attgacattg aggaatgtat       480
     tattactgag tgagacctat ttaacgtttt aatgaagtta aaagattaat gagattttaa       540
     atgcagcaca aaattatgcc gacagtgtat tctagcaaac ggaaatatac tgactaacaa       600
     ttaacttctc gtttattgtt ttatttacgt attatgttat agaataaagc aaattgctga       660
     tatagaggtt agtggtgtaa aacaaaagtg tgagtgtaaa ttgcaatgat ggggcgtttc       720
     atgcaatcgg ttacgtttaa aatgttaagt tttgtaacgg cgatcaacta agctatattt       780
     tgtcagtttc agcgaaatgg atcgtgagga aactagacac agagttactt tgagtccaga       840
     cccaggagcg cccaggtctg agggcgaggg tcgtgaagta ctggattcga gaagggcgaa       900
     acgccgggag actagtcacg agacttggcc gagagaattc actcgcgaga ggcgtgcctg       960
     gaggccatgt tcagagcaac caggggtatc acgggtgcgt gatactgagg ttgaatgcaa      1020
     tgaggatttt ggcggagagc gccaagatcg aatgatgttt cacatgcgga ggaccgaaga      1080
     gagggctctt cgtacgcctg tgagatcatc acgtcgccgg tctcagagtg ctgattccgt      1140
     tggtcatgag gatcttcgag agaagagttc gagttggaac aggctacgac atgaagatga      1200
     gagggattcg cattcgaatt ctaggcgtga gaggaagagg agttggagtt caacgagagg      1260
     agacggtgag caaccaacat cctctaattc taagagattt aagcatttag accctacgaa      1320
     taacatttta gataagtttt tgtcggtttt gcaatcaatc aaaagctcag ataaaccaaa      1380
     gttgtcattt aacaccaata tcgtaccgga atttgaccca atgtcaaaag agcagaccat      1440
     cttaacttgg ttgacaaagg tggaggagtg cgcggaaata tatgggtggg atgataggga      1500
     gactattcat tacgctcttc caaaattaac tggggtagca aagtcttggt accagaattt      1560
     accgactatg atgtttaaat ggaatgagtg gaaaagaaaa ttaatcgaat ctttccctgt      1620
     acgcgaagat tacgctgagc ttttgactga aatgctagct aagagagtaa aatatggtga      1680
     atcactcgaa cattactatt acgcaaaaat aaacttgtta aataggtgta agattcatgg      1740
     gcgtcaagct gtcgattgta ttttgtacgg agtagaagat agggctatca aagtgggcgc      1800
     acaagctgca cagttttcag aaccagagca ggtgctaaaa tattttagga ctgtgaaagt      1860
     aggtaataat cgcgaaaatc gtgattcaaa ctcgagtttc cgagctgatc gtaaaaatgc      1920
     ggctcataca acaaaatcag gtagtttatt aaaaattacg tgttataatt gcgatcaagt      1980
     tggtcatcct agttttaaat gtgagaaacc agcagctaag tgtactattt gtgagaaatt      2040
     aggtcacctc tctattcact gttttaaaaa taaacgccca aataaagatc acgaaaaggg      2100
     taacaatcaa agtacaagta taaaggagca acaagtggct cagttgaatg tagctgagga      2160
     gttgactgct aaatatatga ttaatattaa agtgaacggc cacgtattag actgtcactt      2220
     agatttagga agccaatgtt ctctaatcaa gttgtctaaa gccaaagaat taagtttaga      2280
     catagttatg cctgaagact tacctgtgct cagaggtata ggggctaatc ttatttcacc      2340
     agtaggaatg actattgttg acattgaggt acaaggttta gaggagacca taaatttata      2400
     cgtggttgat gattatgtaa taaaacaatc agttctctta gggcattcat ttaccgagaa      2460
     accagatatt gtgattacta aaacacctac cgcagtaata tttcgcaaaa tacccagtgt      2520
     aaaaatacaa ctcctctcaa ctaaagacat tgagatccca acgaatacac tacgagctgt      2580
     tcaagtgtat gttaacccat atatagatgc acgcgtttat gtaaatgggt ccgtgagagg      2640
     ttcgccgggg gaagaatatt accttctccc tggagactac gaagtaaggc atggtcttag      2700
     cgcactttta attcataacg cctcccccaa cccaatcaca atacaaaagg attctcttct      2760
     gacgcgagta cagtgcaaag atgcagtaga ctcgagagat tttttagatt catgtagcgt      2820
     tacaatctcc gagtcgcaaa gtaacgatac attaaattgt agcgaaacat taagtccgga      2880
     ggaaaagtct agtctactag aattgatagg aaaatacaaa acttgtttct caaccggact      2940
     tcacgattta ggtttcacta atctaacgga aatgacaatc gaactcgagg atgaaggacc      3000
     aattgtatat cgtccctatc gtatgtctta cgcggatcgt atactcgtga gaaatatgat      3060
     acaagaaatg tctgatcacg gtataattag ggaatcgacc tcgacatttg caagcccaat      3120
     agtcctagtg cagaaaaaga ccggcgaaaa acgcttatgc gtagactacc gcgcgttgaa      3180
     ccgcaagact aaaaaggaac attaccctct tcctcgaatc gaggatcaat tagaccaact      3240
     ggcaggaaac aaagttttta cgtcacttga tttagcctct gggtattacc agatagcggt      3300
     cgcagaagag tcgcggcata gaacatcttt cgtgacacca gacggccaat atgagtacaa      3360
     taggatgcca tttggcctgg ttaacgcacc ttctgtgttc cagcgaacaa ttaataaaat      3420
     actactcgag gctaaaatca agtacgccat agtatacatg gacgacgtcc ttataccggc      3480
     tagagatgtt agcgagggtt tacagcgatt agaggaggtt ttagaactgc taaaaagggg      3540
     tggtctaacg ctcaaattaa gtaaatgcca ttttttccta gacaccatag atttcctcgg      3600
     ctttcaggtt agctctgatg gcattagacc cggtcaacgg aaaactgatg cagtgtcgaa      3660
     attcccggaa cccaaaaatc accacgaatt aagacaattc ctcggcctgt cggggtactt      3720
     tagacgcttt atcgtaaact atgcgttaat agcagctcca ttgaccgact tacttaaaaa      3780
     ggatgttaag tggtcatggg gtgaaaacca agagacagct ttcaaaaaaa tcaaatcctt      3840
     gttagttgat cgacctgttc ttgcacttta caatcatgct gcagaaactc aattgcacac      3900
     ggacgccagc aaggatgggt tagctggcat tttgctacaa gctaactccg aaggtgtatt      3960
     ccaaccagtt tcgtacttta gtcgaaagac aaatgcggaa gagcagaaat tccactcgta      4020
     tgacctggaa acattagctg taatagcgtc actaaatcgt ttccgtgttt atcttatagg      4080
     tatacctttt aaaatattta cggattgcaa cgcattgcga tcgacgttag tgaagcgtga      4140
     cttaatcccg cgcatcgctc ggtggtgggt gcaattacaa gaatacgatt gtaccattga      4200
     gtatcgacct ggatcacgca tgtcgcacgt cgacgcgctg agtcgcaatc ccgtagatat      4260
     agtagaaacc gaaccttcga catgccttga ggtcctagct atcgaaaatg gtgaacagga      4320
     ctggatttcg actgtgcaat ctgccgatga tgaaataaag aaaattaaag aaatgctatc      4380
     agaccctgac tctaaaaaca tattagaaat tcatcgtaat tacaaactaa aaaacaacag      4440
     ggtatatagg atagtgggcg atgagattaa atggctcgta cctaaaggtg ttcgttggca      4500
     gatattgaaa atgaatcacg acgacgtagg acattgtggc tttgatagaa ctttgcaacg      4560
     cattcgtaaa aactactggt tttctaagat gcgcaaattc gtaaagaaat acgtttcctc      4620
     gtgccttgaa tgtttgcatc acaaaacccc cggtggtaaa tgtgaaggag aactgcaccc      4680
     catagataaa cccagcatac cttttcatac ggttcacgca gaccacttag gtcctttcat      4740
     aaaaagcaaa aagggcaact gttacttact tgttttggta gacggcttta caaaatacgt      4800
     aaatattaga cccgttaggg atacaaaaac tgcaactaca ataagagtct ttaaagacca      4860
     cattagttac tttggggtcc ctacaaggct catcactgac agaggcacaa gtttctctag      4920
     ttcatctttt aaagagttta tagtacagac cgggattaaa cacataatga atgcagtatc      4980
     gacacctagg gcaaacggtc aagttgaaag atttaacagg acaattctag acgcgctttc      5040
     aacatcgaca catggtaaag acgacagaac ctgggatgaa caaatctcag acattcaatt      5100
     aggtttaaac acaacgacac acaaaacgac tcaaaagtca ccatcagaac tcctctttgg      5160
     gtttaacgtt aaatgtagga ctgaaggcat tttaagcgag attttagaag atacggttaa      5220
     tataacttcc ccggacgcat tagtagatgt aagacaggac gcaagtgaga aaattaagaa      5280
     aaaacaaagc gaggatcggg ataggtttaa tagccgtaga aaagccgcga gatgttattc      5340
     cgaaggtgat ttagtacgag ttgaaagaca ggtacctagt gacggacaat cacaaaaact      5400
     agttgttaag tatcagggtc catatcgtgt actaaaggta ctccccaatg acagatatat      5460
     tatcgaagac accccacttt cacgcaaaaa taatcgtcgt tacgaagctg tagtcgcaat      5520
     cgacaaaatg cagccttggc taagttttag cagagatttt agtagttgcg aagaagacag      5580
     ttcaggcgat gattaattag gaatatagaa gatacgtagg taatgttcaa tgaatcacaa      5640
     aataaataat tgaaagtaat atataataag ttaagatata tagtaagtag aaacttatta      5700
     cagtttaagg gttaatcact gttacttaaa gaataagaaa atatgtatat attaccttgt      5760
     aaaaaaatat aataataatt aaatgtaacc taaatcctaa atcgaattaa aaccctatta      5820
     atattataaa cgtgaaagtt tgtatgtgtc tgtctttcac gcaaagacta ggtactggac      5880
     ggatttggat gaagtttggt acacggatgg tttgtagcct ggattaacac atgggatagt      5940
     ttttatctcg atgtcatgtt cctgtaggat aattttcgag ttgtaacggg tgaatccgct      6000
     ggcagcagct agtacattat aattgaatta aattaataaa atactatgtt ttattataat      6060
     aatattgtta tactatgttt tgaattctga aaatattgta aagatccaat ttaggaatta      6120
     agatatgaat taagataaat actgattttt atatctatga aatgattacc ttgtcgttat      6180
     gttataagca ttttggtaaa atagtttatt tatacctaga ataacatttt gttcattttt      6240
     ttttcttttt tatgtgaaat aatgtattag gcaaatctcg ttttcggatc tgatcatatt      6300
     gtgtgtgcat ataactcgcg aagggtctcg cgctaacagg aaggccgagt                 6350
//
ID   Gypsy-16_SpEx-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-395
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4145-4145 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 395 BP; 145 A; 43 C; 64 G; 143 T; 0 other;
     tgtaagctca tctattgttt taataataat tgtgtatatc taaatcattg tctttgacaa        60
     tgatgtcatt tgtatagact aaaaacagga agtcaacagt aaagaaagtt attaattgtt       120
     aatgtatata tttaagcatt aatttattat tataaatagt aatttgttat aaatgtattt       180
     ttagaataat ttaaagtaac taaactctga tattaagaaa ttagatgtca aattaaggta       240
     gtgtattgcc aatgtcggcg gccatgcgac attcgaatct gagaggtgga gacgaacggt       300
     cataataaag aaatattttt gtaaagtgat tatacgtgtt gtaaaagtat accgattttt       360
     attcccacat tctgcatatc tgaactagac caata                                  395
//
ID   Gypsy-16_SpFr-I repbase;    DNA;    INV; 4672 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4672
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1852-1852 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..4659
FT                 /product="Gypsy-16_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MELRNAKVISREDIMSDDASEPEYYDQAEQSAASAPA
FT                 PVPAGAHGRVGGASTSATTETVLAGFMESFVRMQAETNRTLVETLRAFNGS
FT                 GKPPTSTPTPDSRPPSVYPSAVTGNFAKCTARFDGKSRDAEVLEAFIDAVQ
FT                 VYKECAGVSDEHALRGLPILLEGDAAVWWRGARANVHAWPDAVARLRAMYG
FT                 MQLPPYKVLREIVDTNQKDSERAEVFMCKVRSLFTKLPYAVPMRIQLDIIY
FT                 GLLHRRVRKRLPRDDVDDIDLMLEKVRAIEDSIVELNLRTYAANPIVSTSK
FT                 STSQNLSRSQDAPRDRAREPESSERERSVTTSSNGTSVAKLTPNSNENLKR
FT                 DKRVRCSFCKFYGHVLTDCRNFQNKNNKPQPTSALSSSGPNNLRCYGCGQP
FT                 GVVKSKCENCSGKQLPATRCDFNMVNGENDLREAHAATPSHAMVSVTIANR
FT                 VGAAILDTGATCCVAGSLLYSILTSVGVQFHEAERTIGLAIGSRQTKTVLT
FT                 ATVPVILEGRQIDTEFIVFPGESTRTLLGRDFITKAGVTLDLSQESWFFAD
FT                 NPEQIFPLVQSFSLNSTELMQADISDVALRDAEGTNLPPEHRNALNAFLRS
FT                 RANQFAADGPPTDFACHKIKVRENQEPLASPPYRLSPSKKEALEKELQKLL
FT                 SADVIEECESPWASNVVLVKKKDGSYRLCVDYRKLNAVTEPDRYPLPRIED
FT                 VLHAAKTSKYMSTLDLRSGYFQVSVDPDHRDFTSFTTPLGTFRFKRMPMGL
FT                 RNSGATFQRLIDRFKSNLPGITLLAYLDDLLVLSEDSFERHLADLETVFDR
FT                 LAMFNLRVNREKSHFARDAVKFLGHVIVPGGIRMDPEKTSAITGMPPPQNV
FT                 RQLKCFLQTSSWFRRFIPGYAEVSRPLTSLLKKGSTWEWGPEQQNAFETIK
FT                 SLLTSAPILRQADGTKPFVLRTDSSGYALGAALLQGEGTDERPVEYASRLL
FT                 TAAEKNYNTTEREALAVVWAVSKFRGYIDGADVTVKSDHQPLRWLMSLKSP
FT                 SGRLARWALSLQEYNLKIEYTPGKANVIADTLSRPVCATEDIEGTECDLRL
FT                 AVVDLPSRSPRDVRDGQMKDPEIRKIVEALESDDPFRGRSWADKGYVVVDG
FT                 VLYRYGPDNEEDDDASLVVPEHERKDVLAEYHDAPTAGHFGVERTLHRLAG
FT                 KYYWPGMRAYVTQYVKNCAACQRYKVDTRKPAGLLQVPAMSRRFEVFAVDL
FT                 FGPLPETPSGNKWILIVEDTCTRWVELFALSSATSEECAKTLVNEVYLRYG
FT                 TPRRLISDNGVQFVSEVMQQTCHVMGIKQALTSFYHPESNPVERKNRDLKP
FT                 QLAILVGKDHDSWDSHLPAIRFAMNSAFTASTGHSPAFLNFGREIRAPADV
FT                 LSEMRAIVENDNVVLSITPFLRKLSAVLLDARDVHEKAQEAQKKYADESRR
FT                 PAPDYKVGDLVLLKTQGSNDTIKGQTPKFIPRRDGPYRIQEVIGSTTYALE
FT                 RISDGVSLGRYHVSLLTPFVGPIQDPIQEKRKRGRPRKANPASGTQRLG"
XX
SQ   Sequence 4672 BP; 1129 A; 1228 C; 1317 G; 998 T; 0 other;
     gtggctgccc aactcgtggc ttcgaattca cgagaacttt gtcgcgaatg ccgcgataga        60
     tgcctaccta tttcaaatcg tgaaaagtta agttaagtta cgtgaagaac tgttgccatg       120
     gaactaagaa acgcgaaagt tatatctcgc gaagatatta tgagtgacga cgcgagtgag       180
     cccgaatact acgaccaggc ggagcagagc gctgcaagcg cccccgcccc cgtccccgcc       240
     ggggcgcatg ggcgcgtcgg cggcgcttcg acgagcgcga ccaccgagac cgtcttagcc       300
     ggtttcatgg agtccttcgt gagaatgcag gcggagacca acagaaccct agtcgaaacc       360
     ctgagggctt tcaacggctc cgggaaacca ccgacttcga cgccaacgcc cgactcccgt       420
     ccgcccagcg tctacccgtc cgcggtcaca ggcaacttcg ccaagtgcac tgcacgtttc       480
     gacgggaagt cgcgcgacgc ggaggtactg gaggcgttca tcgatgcggt gcaggtgtac       540
     aaggagtgcg cgggcgtcag cgatgagcac gcgctgcgcg gcctgccgat tctgctggag       600
     ggcgacgcgg ccgtgtggtg gcgcggcgcg cgcgctaacg tgcacgcctg gccggacgcc       660
     gtggcgcgct tgcgtgccat gtacgggatg cagctgccgc catacaaagt cctacgagag       720
     atcgtcgaca cgaaccagaa agactctgaa cgtgcagaag tgtttatgtg caaagtgcga       780
     tcattgttta caaaattacc gtacgcggtg cctatgcgta tacaactaga tataatttac       840
     ggccttctac atcgacgagt tagaaaacgt ttacctagag acgatgtcga cgatatcgat       900
     cttatgttag aaaaggtgag ggccatagaa gattctattg tcgaattaaa tcttagaacg       960
     tacgccgcga acccgatcgt ttctacgtcg aaatcgacaa gtcaaaactt gtcgagatcg      1020
     caagacgcgc cgcgcgaccg agctcgcgaa cccgagtcga gcgagcgcga acgcagcgtt      1080
     accacgagtt cgaacggtac tagtgtcgcg aaactcactc caaactcgaa cgagaatttg      1140
     aaacgtgata aacgcgttcg atgttcgttt tgcaaatttt atggtcacgt tttaacagat      1200
     tgtcgcaatt tccaaaataa aaataataaa ccacaaccaa ctagtgcgct ttctagtagt      1260
     gggcctaata atttgcgttg ttacggatgt ggccaacccg gtgttgtaaa gtctaaatgt      1320
     gaaaattgta gcggaaaaca gttacccgcg acgcgatgcg attttaatat ggtgaacggc      1380
     gagaacgact tacgcgaagc tcacgcggcg acgccgtcac acgctatggt atcggtcact      1440
     atcgcgaata gggtaggtgc cgcaatactc gacacggggg ctacgtgctg cgttgccggt      1500
     tccttgttat actctatctt aacatcggtt ggggtacaat ttcacgaggc ggagcgaacc      1560
     ataggactcg cgattggttc ccgccaaacg aaaacagtcc tcacggcgac agtacccgta      1620
     attttagagg gaaggcaaat cgatactgag ttcatagtat ttccaggtga gagtactcga      1680
     acgttgttag gtcgcgattt tattactaag gctggggtta cattagactt gtcacaggag      1740
     tcatggttct ttgctgataa ccctgagcag atttttcctc tcgtgcaatc ttttagtcta      1800
     aatagcacag aactgatgca ggcagatatc tccgacgtcg ccttgcgcga cgccgaggga      1860
     acgaacttac caccagagca caggaacgcg ctcaacgcat ttctgcgtag cagagcgaac      1920
     cagtttgctg cggatggacc tcccacggat tttgcctgtc ataaaattaa ggtaagagag      1980
     aatcaggaac cccttgcctc cccaccatac aggttgtcgc cgtccaagaa agaagcctta      2040
     gaaaaggagc tgcaaaagct actcagcgcc gacgttatcg aggagtgcga gtcaccatgg      2100
     gcctccaacg tcgtcctggt gaagaagaag gatgggagct acaggctttg cgtggactac      2160
     cgcaagctca acgcggtcac ggagcctgac cgatacccac ttcccaggat cgaagatgtg      2220
     ctccatgcgg cgaaaacctc caagtacatg tctacactgg acctgcgttc cggatatttt      2280
     caggtgagcg ttgaccctga tcatagggac tttacctcgt tcacgacacc gctgggcacc      2340
     ttcaggttca agcgcatgcc catgggcctc cggaattcag gggcaacctt ccagagattg      2400
     atcgaccggt tcaaatccaa cttaccaggt ataaccttgc tcgcatatct ggacgatctg      2460
     ttggtgctgt ctgaagactc gttcgaaagg cacctcgcag acctggaaac cgtgttcgac      2520
     cgccttgcta tgtttaacct gcgggtgaac cgagagaaga gccacttcgc ccgagatgcc      2580
     gtgaagtttc taggtcatgt catcgtacca ggtggtattc gcatggaccc agaaaagacg      2640
     tctgctataa ctggcatgcc gccccctcag aacgtgaggc agctgaagtg tttcctgcaa      2700
     acctcgagct ggttcaggcg cttcataccg ggttatgccg aggtgagtag gcctttgact      2760
     tctctgctga agaaagggag cacctgggag tggggccccg aacagcagaa cgctttcgag      2820
     accatcaagt ccctcctaac atcggctcct attctccgtc aggctgacgg gacgaaacca      2880
     ttcgtcctta gaaccgacag cagcggctac gcgcttggag cggctctact ccagggggag      2940
     gggaccgatg agcgacccgt cgagtacgcc agtcgcctcc tcacagccgc tgaaaagaat      3000
     tataatacga cggagagaga ggcactggct gtagtatggg cggtgtcgaa atttaggggg      3060
     tatattgacg gcgccgatgt gacagttaag tccgatcacc agccgcttag gtggctcatg      3120
     agtttgaagt caccaagcgg ccgcctggcc cggtgggcgc tcagtcttca ggaatataac      3180
     ctgaagatcg agtacactcc tggtaaggca aacgtgatcg cagacacgct gtcacgtcct      3240
     gtatgcgcga cggaggatat tgaggggact gagtgcgact tgcgcctcgc cgtggttgac      3300
     ctaccctcgc gcagccctag ggacgtcaga gacggccaga tgaaggaccc ggagattcgc      3360
     aagatcgtcg aggcgttgga atccgacgat ccctttaggg ggaggtcctg ggcagataaa      3420
     gggtatgtag tagtcgacgg cgtgttgtac cgttatggtc ccgacaacga agaagatgat      3480
     gacgccagct tggtggtacc ggaacatgag cgcaaggacg tgctagccga gtaccacgac      3540
     gctcccacag ccggccattt cggggtggag cgaactttgc atcgtctcgc aggtaagtat      3600
     tactggcccg ggatgcgggc ttacgttact cagtacgtca aaaactgtgc agcgtgtcaa      3660
     cgatacaaag tggacacgcg aaaacccgct ggcctgctgc aagttccagc tatgtcacgc      3720
     cgcttcgaag tgttcgccgt agatctgttc gggccattac cggagacacc ctccggcaac      3780
     aaatggatcc tcatagtgga agacacttgt acaaggtggg ttgagttatt tgccctttca      3840
     tccgctacca gcgaagagtg cgccaaaaca ctggtgaacg aggtgtacct acgttatggg      3900
     acgcccagaa gactcatcag cgacaacggc gtgcagtttg tgagcgaagt gatgcagcag      3960
     acgtgtcacg tcatgggcat caagcaggcc ctgacgtcgt tttaccaccc ggagtccaac      4020
     cctgtcgaac gaaagaaccg cgaccttaag ccacagcttg ctatactggt tggtaaggat      4080
     catgattcct gggatagcca tcttcccgct attcggttcg ccatgaactc tgcgttcact      4140
     gcaagcacgg ggcattcccc cgcttttctc aacttcgggc gtgagatacg cgctcccgcc      4200
     gacgtgttgt ctgagatgcg cgccatcgtc gagaacgata atgtggtctt gtctattacc      4260
     ccgttcctta ggaagctttc agccgtgctg ctcgatgcac gggatgtgca tgagaaagcc      4320
     caggaagctc agaagaagta cgctgatgag agtcgtcgcc cagcgccaga ctataaggta      4380
     ggggatctcg tactgcttaa gactcagggc tctaacgata cgatcaaggg gcagactccg      4440
     aagttcattc cccgccggga tggaccgtat cgcattcagg aggtgatagg tagcacgaca      4500
     tacgctttgg agcgtataag tgacggcgtc tcgctaggga ggtatcacgt ttctttgtta      4560
     acaccgttcg ttggtcccat ccaagatccc attcaggaga agcgtaagag ggggagacct      4620
     cgtaaggcta acccggcttc ggggacgcaa cgcctgggtt agagggggag ga              4672
//
ID   Gypsy-16_SpFr-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-340
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1870-1870 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 340 BP; 74 A; 106 C; 75 G; 85 T; 0 other;
     tataaggcga acgtccgcgc cacggccgtt tgaatattcg cgccgcgacc gtttgaattt        60
     cgcgccacta aaacaatact cgcgccaaca gcgcgctcgt ggttttccgc tgtgcttcgt       120
     actcggtcgg cgccgccgcg ccgccgcgct gcctcgccgc ccgcgccccg cgcacaggcc       180
     agtagcgtac gatctcgcgc cgcttacgcg tcgttagcga acatatctat gtcccacgcc       240
     ttttcttccc aaaaactatt gtaactacaa atgtctgtat ctaattatta ttgtgtaaag       300
     tttgtgatta atggtaaata aagaccttac aaccattaca                             340
//
ID   Gypsy-16_TrNi-I repbase;    DNA;    INV; 4017 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4017
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 256-256 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..911
FT                 /product="Gypsy-16_TrNi-I_1p"
FT                 /translation="MVDNKEEDKDFFMTYRVGVKTPAFNADDPQLWFAQLE
FT                 GQFVLSNITTDNTKFYYVLAQLEPQHSAQVRDLIVNPPSTGRYEKLKAELI
FT                 KRLSASQERKIKQLLMHEELGDRKPTQFLRHLQQLAGPTVPTDFIRSIWCS
FT                 RLPANLQTIVTMQANSSLEEVAELVDRINDIVPVTAQVAATSMPVPGQVAS
FT                 SQPATSQQSSAIEALTQTVAELSRKLEVMSSQLRHRSSRSRSGGRFNQNRH
FT                 RSQSRTRDNRYCYYHSRFGDKARRCTEPCAYNKKALNHQGSH"
FT   CDS           884..3991
FT                 /product="Gypsy-16_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EGVKPPRQPLKADIDCHAISSRLFITDRSTKIQFLID
FT                 TGSDLCVFPRSAVRGPRMKTKYELFAANGSVISTYGFHPLTLNFGLRREFT
FT                 WRFIVADVTKPIIGVDFLAYYNLIVDCRNQRLIDNLTSLATQAPQYEPTEA
FT                 ISSVRTITEVSNYHRILKEYPDLTRPTGKPGVPKHKTLHHIRTTPGPPVSN
FT                 RPRRLDPQRLKIAKREFEEMLQNGTARPSESAWSSPLHLAPKKNDGWRPCG
FT                 DYRALNARTIPDVYPIRHLQDFTHELAGSTIFSTIDLVKAYNQIPVSEEDI
FT                 PKTAITTPFGLFEFPYMTFGLRNAAQTFQRFMDEVLRDLTFCYGYLDDILV
FT                 FSKDIHQHEQHLRLLFERLVKYGVLLNTSKCIFGQTEVIFLGYKVSASGTQ
FT                 PPECKVQAIQDFPEPKTVKELRRFLGMLNFYRRFIPEAASKQAPLNELLAG
FT                 PKVKGSHPIIMTPELLEAFNSCKQSLTEATLLVHPDPHAELNILTDASDTA
FT                 IGAVLQQRSKGRWQPLAFFSKKLSPSQKKYSPYDRELLAIYEAIRYFRFMV
FT                 EARVFHVTTDHKPLTFAFARPRSNCPPRQFRYLDYIGQFTTDIRYIPGKDN
FT                 VVADTLSRVNELQLPLDYQALAKEQQTDLELQSLLKDGSSLKLRKVKLPEC
FT                 NTEIYCDVTCIPRPFITRTFRKQVFMSLHNLSHPGRKASVRLVTERFVWPG
FT                 VRKDCRQMAKECEACQRSKVTRHTSAPLQAFKPPSARFRHIHLDLIGPLPL
FT                 SSNYRYCLTIVDRATRWPEAYPLQDITAETCATALTTGWIARFGCPEHITT
FT                 DRGRQFECRTFKNLAALIGATHHLTTSYHPAANGLVERLHRQLKAAIMCHA
FT                 NSSWTEVLPWVLLGIRSAWKEDIGATTAELVYGEPLRLPGQFLTEASKDAV
FT                 DMSDLVDRLRAHMTKLTPQPTSWHTSSSRPFYIPKDLSTASHVFLREGPGR
FT                 RSLQAPYTGPHKVLARDQKTVDIEVNGKRQKVTIDRVKPAYRTRDELDPGQ
FT                 GQTSDPVQPDNIVRKTRSGRTVKFPNYYRP"
XX
SQ   Sequence 4017 BP; 1139 A; 1131 C; 926 G; 821 T; 0 other;
     ctggtgaccc cgacgtgatc cggattgaag tatagaaact cgaagcctgg taaacatcaa        60
     ttatggtgga caacaaagaa gaggacaagg atttcttcat gacataccga gtgggggtca       120
     agacaccagc cttcaacgca gatgatccac aattatggtt cgcgcagctt gagggccagt       180
     tcgttctctc caacattact acagacaaca cgaagtttta ttacgtgctg gcgcagctcg       240
     agccacaaca ttcagctcaa gtacgtgacc tcatagtgaa tcccccctcc accggcagat       300
     acgagaaact gaaagcagag cttattaaac gattgtccgc ctcacaggaa aggaagatta       360
     agcagctact catgcatgag gagttaggag acaggaaacc cacccaattt ctccgccacc       420
     tgcagcaact ggctggaccc actgtcccga ccgacttcat cagatcaatt tggtgcagta       480
     ggttgccggc gaacctccaa actatagtca cgatgcaagc aaactccagc ctagaagaag       540
     tagcagaatt agtagaccgc atcaatgaca tcgttccagt aaccgcgcaa gtagctgcta       600
     ctagcatgcc agtgcctggg caagtagcta gctcacagcc cgcaacgagc caacaaagca       660
     gcgctatcga agcgttgaca caaacagtgg ctgagctatc acgaaaactt gaggttatga       720
     gctcgcagtt acgtcaccga tcttcccgtt cccgttctgg aggaaggttt aaccagaacc       780
     gccaccgatc acaatcccgc acgagagaca accggtactg ttactaccac agccgatttg       840
     gcgacaaagc ccgcagatgt acagaaccat gtgcctataa taagaaggcg ttaaaccacc       900
     aaggcagcca ctaaaggcgg atattgactg ccatgcaata tcgagccgcc tgttcattac       960
     ggatcgcagc actaagatac agtttcttat agatacgggt tcagacctgt gtgtatttcc      1020
     acgatccgct gtacggggac cacgcatgaa gacaaaatac gagttgtttg cagccaacgg      1080
     gtcagttatc agcacatatg gatttcatcc cctaacactc aactttggac tccgccgcga      1140
     gttcacgtgg cgattcatag ttgccgacgt caccaagccc ataatcggag tcgacttttt      1200
     ggcttactac aatctgattg tcgactgccg aaaccagcgc ctcatagaca acctgacgtc      1260
     ccttgcaact caggcaccac agtacgaacc aacagaagcc atatcatctg ttcgcaccat      1320
     caccgaagtt agcaactacc accgcatctt gaaggagtat ccagacctca ctcgtcccac      1380
     tggaaagcca ggggtaccga agcacaagac actgcaccat atacgcacta cgccgggacc      1440
     ccctgtctct aatcgtcctc gtcgtttgga tccacaacgc ctcaagatag caaagcgaga      1500
     gtttgaggag atgctgcaaa acgggacggc acgcccttcg gaaagcgcct ggtcctcacc      1560
     actgcactta gcgcccaaga agaatgacgg atggcgtcca tgcggtgact accgcgcatt      1620
     gaacgcacgg accatcccgg acgtctatcc tatcagacac ctgcaggact tcacccacga      1680
     gttggcgggc agcactatct tctccacgat agatttggtg aaggcataca accaaattcc      1740
     cgtctctgaa gaagacatac ctaagacggc gataacaact ccatttggcc tatttgaatt      1800
     tccctacatg acctttggac tcagaaacgc cgcacagact ttccaaaggt tcatggacga      1860
     agttctgcga gacctaacct tttgttatgg atatcttgac gatatactgg tgttcagcaa      1920
     ggatatccat cagcacgaac aacacctcag actactgttc gaaaggttgg tcaaatacgg      1980
     cgtcttatta aatactagca agtgtatttt tggccaaaca gaggtgatat tcctgggata      2040
     caaagtctct gcgtcaggta cacagcctcc agaatgcaaa gtccaagcca tacaagactt      2100
     ccctgagcca aagacggtca aagaactgag gcgattccta gggatgctga acttttatcg      2160
     ccgtttcata cctgaagctg cttcaaaaca ggcacctctc aacgaactgc tcgcaggtcc      2220
     aaaagtcaag ggatcacatc caatcatcat gacaccagag ctgctagaag ctttcaacag      2280
     ctgcaagcag agcctcaccg aagccacact cttagtgcat ccagaccctc acgctgagct      2340
     aaacatactt acggatgcgt ctgatacagc aatcggcgca gtacttcagc agcggagcaa      2400
     agggagatgg cagccgctgg cattcttttc gaagaaactc agcccatcgc agaagaagta      2460
     cagcccgtac gaccgtgagc ttctggcaat atacgaagcc atcagatact tccgattcat      2520
     ggttgaggca cgcgtgttcc acgtcacaac agaccataaa ccgctgacat ttgcgtttgc      2580
     acgcccacgg tcaaattgcc ctccccggca attcagatac ctggattata taggacaatt      2640
     tacgacagat atcagataca tacctgggaa ggacaacgtt gttgcggaca cactttcacg      2700
     cgtcaatgaa ctccaactac ccttggatta ccaggccctg gccaaggaac agcaaaccga      2760
     cctcgaactg cagagcttgc taaaagacgg atcatctttg aagctgagga aggtgaaact      2820
     acctgaatgc aacaccgaaa tatactgcga cgtaacgtgt attccacgac catttataac      2880
     gagaacgttt cgcaagcagg tgttcatgtc tcttcataac ctcagccatc ctgggcgtaa      2940
     ggcaagtgtc cggttggtca ctgagaggtt tgtttggccg ggggtaagaa aggactgcag      3000
     acaaatggca aaagaatgtg aagcgtgtca aaggagtaag gtgacacgcc atacctctgc      3060
     cccattgcag gcattcaaac caccttcggc acgttttcgc cacatccacc tcgatttaat      3120
     tgggccctta ccactgtcct ctaactacag gtactgcctc acgattgtcg accgcgcgac      3180
     acggtggcct gaggcgtacc cactgcagga cattaccgca gaaacctgtg ctactgctct      3240
     caccactgga tggatagccc ggttcggctg tccagaacat atcaccacgg accgaggccg      3300
     gcaatttgaa tgccgcacct tcaagaacct agccgccctg ataggcgcca ctcaccatct      3360
     gaccacttct tatcaccccg cagctaacgg cctcgttgag agactgcacc gccaattgaa      3420
     agccgcgatc atgtgccatg cgaattcaag ctggacagaa gttcttccat gggtactact      3480
     aggcatacgc agcgcatgga aagaagacat aggcgcaaca accgctgaac tcgtctacgg      3540
     tgagccactc cgcctacctg gacagttcct cacagaagcc tcaaaggatg ccgtggacat      3600
     gagtgacctg gtagacaggt tacgcgccca catgaccaag ttgacgccac aaccaacgtc      3660
     gtggcacacg agctccagcc gacccttcta catcccgaag gacttgagca ctgcatccca      3720
     cgtctttcta cgcgaaggcc caggtcgaag atcactgcag gccccttata caggtccaca      3780
     caaggtcctt gctcgcgacc agaagacagt agacatcgaa gtcaatggaa aaagacagaa      3840
     ggtgacgatt gaccgagtaa aacctgcata taggacgaga gacgaactgg atccaggaca      3900
     aggccagact tcagacccag ttcagcctga taacatagtc agaaaaacaa gaagcggcag      3960
     gacggtgaaa tttcctaact actatcgccc gtagtcacgg tctcgccggg ggagtgg         4017
//
ID   Gypsy-16_TrNi-LTR repbase;    DNA;    INV; 477 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-477
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 255-255 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4 or 5-bp TSDs.
XX
SQ   Sequence 477 BP; 120 A; 124 C; 94 G; 139 T; 0 other;
     tgtggcgagt aagtcgcacg actaaacgca gcacaggatc acgccatttt acgtcacagc        60
     gtgccgtgtg caaaacaagt ttcgaaagct ccgcccacct tgcgacgaca agttaactta       120
     gtgccgcctc ccaagacatg gcgtctgcgc atcctttgtt cgaagcacta atgaggcaag       180
     atggcggcgc actcatctat tgtccacgct aatgagaggg cgtaaactcc tgcgcaaata       240
     tgccaagtgg gagccgtttt ttatcataat gtttagtata aatagctgtg tattttctaa       300
     gattcattca ttacgcttgt gtcttgctac cgcaatataa ctctgtcgct ttcacctggc       360
     attttattcc ttcgcttatc atcatattcc tcattgcttc tgctataccc acctgtatta       420
     tctacgcaag tagtatactg tagccagcat ataccaacgg agtcctatac tacttca          477
//
ID   Gypsy-16_TrVa-I repbase;    DNA;    INV; 5060 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5060
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 261-261 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..4847
FT                 /product="Gypsy-16_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDEDQFKRFMDMMSTTLQGLKSNGSSASEHSNGTQVS
FT                 SLLSNFENFNRKKEKFSQYKERFENYASIRGIKDDIALLKGTFLNCVGGDT
FT                 YELVKAIMAPKSLSDATYTEIVDTLEKYLSPKPSELIEQHRFLSRVQNEGE
FT                 SIGEYVAALQRFLPNCNFNCEQPNCRTSVSNMFLRAQFIRGISSSYIREKL
FT                 LEESSITFSQAVTKALTLESSHRNNQEIKKTINSNYIDSDHVHKVSTSYKS
FT                 PSRSRSKSKTMRNQQPRSVSTNNHRSSSRQSSXQRPRYNYKDLGINDLCFK
FT                 CGRNNHRQKDCRIQREKLHCESCKREGHVSKVCFSTLSKKNKVLNLEFEES
FT                 QPTEFDEYHDLYRISIVTPKAEYFLNHSNNVCNMAEKYLTTVHIENCPVQF
FT                 EIDTGCGFTLLPKNVYKNLNLEGPLMPVSIQFRTYDAGVVIPIGAKKVNVR
FT                 YKDRVSKELLYVMESNFASILGRTWIRKLKINLEDIDNDQLEIRNVEMPSE
FT                 KQSQFVPMSTEELMNEFPNTFQQSVGKIPDIKGSLELRKNAKPRYLPPRDV
FT                 PYASRDGVEEELKELKKDSIISEIDHCDWGSPIVPVPKPNGKTRICVDYKY
FT                 TVNTQLVDNHYPIPKIDEILSELRNSRYYCKLDLFKAYLHVEMDEESKRIQ
FT                 AISTHKGTYLMNRLSLGIKVAPSLFHRILAIKLKGLKGVTIYFDDIVVHGP
FT                 TLEQCQENVLACLQRLQENDLHLNIEKCLFFKTKIAYLGYIIEGRNITKDP
FT                 RKVQAIVDAHRPQSKDEVRTFLGLVTYYARFIPNASTISFPIRELLKKSTP
FT                 FKWSIACERAFLKLKSIISSDQLLMAYDPSLPVSVACDASPTGIGAVLSQT
FT                 VGLMEKPVAFVSRSLTSAERNYSQIDREALAIVFALDKFFMFVYGRKFTLI
FT                 TDNKPLTRIFHETAKLPPMTAARLLRYAAYLSMFNYVTKFRKSKEHANADF
FT                 LSRFAVNQGPAKGNQEFLDAELLVNFETTLNQIESKQITSEIIAEETRKDT
FT                 ELAELLTSLRTNDDCKENLEFSIQGNVIFRGNRVYIPKSLRPKILEELHET
FT                 HTGMTRMKQLARKYCYWPGIDSDIDRLVRACPSCQMAQKSPRKVPVHQWEI
FT                 PKQNFDRIHIDYAGPRKGMYFLIVVDAKSRWPEIKIVSSPPTTDTTIRLLE
FT                 EIFTTHGYPKTLVSDNASIFAETNEKFRNYCKQRGILQSFIAPGHPATNGM
FT                 AERCVQTLKSKLNKMEAEPGTVNSKVQRILLQYRATPMADGQSPGELYLHR
FT                 PIRIRLDAIRPTKPVRNQFTNNPVRSLAVSQKVIARVYRDNKPAWQYGVVL
FT                 KKFGKLHYLIKLNNGYIFKRHIDQLKMVPNDVRVDSSARPIVPKSSAKPEI
FT                 PQKRVSFAKLPDQIEFFQAPSSVVLPSQVPASTASEQIVQKSTLPKQIVQE
FT                 PAVAGPSRNCKESMQKSPVVRKPIAPVPNSVQPCTAPKSAIIPVKTAVPVL
FT                 VGNRSPNPGTPSSPPIIDISSDKDEPSCQVAGSSKSTPSQAEGPQKKLQPD
FT                 KFSRGRGLQRDLQTRSARVIKTPVRFKDYITELD"
XX
SQ   Sequence 5060 BP; 1718 A; 1027 C; 942 G; 1370 T; 3 other;
     atttggcgac gagaataaaa gtttaatcgt ccaaatcgcg cgcgtacggg cgagaattcg        60
     cgtaattcaa acggcgtgtt cggcacctta tcagaaatgg cgtgcacgtg cacctcatcg       120
     ctctgaatcg tgaatctaag ttggagactc atagcagcat taatttcatc ggacccatag       180
     gataaaatca ttgtacaatg gatgaagatc aattcaagcg ttttatggat atgatgtcca       240
     ctacattgca gggactcaaa tccaatggct catcggcatc agaacatagt aacggaacgc       300
     aagtatcttc tctcttaagt aattttgaga atttcaatag gaaaaaggaa aaattttctc       360
     aatacaagga gcgttttgaa aactatgcat caatcagagg cattaaggat gacatagctc       420
     tcttaaaggg cacgtttctt aactgtgttg gaggcgatac ctacgaatta gtaaaggcca       480
     tcatggcacc caaatctctt tcagatgcta cttacactga aatagttgat accctagaga       540
     agtatctaag tcctaaacct agtgaattaa ttgaacagca tcgtttcctt tctagagttc       600
     aaaacgaagg tgaaagcata ggcgaatacg ttgctgcgct ccaaagattt ttgcctaact       660
     gcaattttaa ttgtgaacaa cccaattgca gaacctcagt atctaatatg ttcttaagag       720
     cacagttcat cagaggaatt tccagctctt atattcggga gaaactttta gaagaatctt       780
     cgattacatt tagtcaagca gtaacgaaag cgttaacgtt agaatcttcc catcggaaca       840
     atcaagagat caagaaaaca attaattcta attatattga ttctgatcat gtccacaagg       900
     tatccactag ctacaaatca ccatcaagat caagatcaaa atccaaaaca atgcggaatc       960
     agcagcctcg gagtgtttcg accaataatc atcgttctag cagccgtcaa tcaagtmaac      1020
     aacgtcctag atacaattat aaggatcttg gaattaatga tctatgtttc aaatgtggtc      1080
     gcaataatca tcgtcaaaaa gattgccgaa tacaaaggga aaaactccac tgcgaatcct      1140
     gcaaacgtga aggtcatgtg agtaaagtgt gtttttctac attaagtaaa aagaataaag      1200
     ttcttaatct tgaatttgaa gaaagtcagc caacagagtt tgatgaatat catgacttat      1260
     accgtatctc aattgtaacg cctaaagctg agtattttct caatcatagt aataatgtgt      1320
     gtaacatggc agaaaaatat ctaacgactg ttcacattga aaactgccct gtacaatttg      1380
     aaatcgatac agggtgtggg tttacgttgt tgccgaaaaa tgtttacaaa aatctaaacc      1440
     ttgaaggtcc actgatgccw gtatcaatac aattccgaac ttacgatgca ggagttgtga      1500
     tacccatcgg agccaaaaag gtaaatgtca gatacaaaga cagagtaagt aaggagttat      1560
     tgtatgtcat ggaatcaaat tttgcatcaa ttttagggag aacgtggata cgtaaactta      1620
     aaatcaacct tgaagacatt gataatgatc agttggaaat ccgtaatgtt gaaatgccat      1680
     ctgaaaaaca atcacaattt gttccaatgt caactgaaga actcatgaat gaatttccga      1740
     atacatttca gcagtcagtc ggtaaaatac ctgatatcaa aggttcttta gagttaagga      1800
     aaaatgcaaa acctcgttat ctacctccta gagatgttcc ttatgcatct agagatgggg      1860
     ttgaagaaga gttaaaagag ctcaagaaag acagcatcat atcggaaatt gatcattgtg      1920
     attggggttc accaatagtg ccagttccca aaccgaacgg caaaacaaga atttgcgttg      1980
     actataaata cacagtaaac acgcaactag ttgataatca ttaccccatc cctaaaattg      2040
     acgaaattct cagcgaactc cgaaattcaa ggtactactg caaactagac ttgttcaaag      2100
     catatctcca tgtcgaaatg gacgaagaaa gcaagcgtat acaagccata tccacgcaca      2160
     aaggaaccta tttgatgaat agattaagct taggtatcaa agttgctccg tcgttatttc      2220
     atagaattct tgcaatcaaa ctcaaaggcc ttaaaggtgt aaccatctat tttgatgata      2280
     ttgtagttca tggtcctact ctggaacagt gccaggaaaa tgtgcttgcc tgtctgcaga      2340
     gacttcaaga aaatgactta cacctgaaca tcgaaaaatg tttgtttttc aaaacaaaaa      2400
     tagcctacct gggatacata atcgaaggcc gcaacattac caaggatcct cggaaagtcc      2460
     aagccatagt agacgctcat cgaccgcaaa gtaaagacga ggtaagaacc ttccttggtc      2520
     ttgtcacgta ctatgctcgt tttattccaa acgcatcgac aatttctttt ccaatccgag      2580
     aattattgaa gaaatcaact ccgtttaaat ggtcaattgc ttgtgagcga gcattcttaa      2640
     agttaaaatc tattatttca agtgatcaac tacttatggc ttacgaccca tcattacctg      2700
     tctcagtggc gtgtgatgct agccctactg ggattggagc agttttatct caaacagttg      2760
     gactaatgga aaaaccagta gcatttgtgt ctagatccct cacatcagcg gaacggaatt      2820
     acagtcagat agaccgggag gccttggcga tagtattcgc gcttgacaaa ttcttcatgt      2880
     tcgtttatgg aagaaagttt acgctaataa ctgataacaa gccacttact agaattttcc      2940
     acgaaaccgc aaaactaccg cctatgactg cagcccgtct tctcagatat gccgcgtacc      3000
     tttccatgtt taactatgta acaaagttca ggaaaagcaa agagcatgca aatgcagatt      3060
     ttttatctag atttgcagtg aatcaaggcc cagcaaaggg taatcaagaa tttttggacg      3120
     cagaactgtt ggttaatttt gaaacaacat tgaaccaaat agagagtaaa caaattacca      3180
     gtgaaatcat cgcagaggaa actcgaaaag atacagagtt agcagaactc ttaacatcgt      3240
     tacgaacaaa tgacgactgc aaagaaaact tagaattttc tatccaagga aatgtaattt      3300
     ttcgaggaaa cagagtatac attcccaaaa gtttacgccc aaaaatccta gaagaacttc      3360
     atgaaactca tactggcatg acacgaatga aacaattagc tagaaaatac tgctactggc      3420
     ctggaattga ttcagatata gacagactag ttcgtgcctg ccctagctgc caaatggctc      3480
     aaaagtcacc taggaaagtc cctgtccatc aatgggaaat tcctaagcaa aacttcgacc      3540
     gcatacacat agattatgca gggcctcgaa aaggtatgta ctttcttatt gttgttgacg      3600
     ctaagtcccg ttggccagaa attaaaatcg tttcatcacc acccaccact gatacaacaa      3660
     ttcgacttct cgaagaaata ttcacaacgc atggctatcc taaaacattg gtatcagaca      3720
     acgcttcgat cttcgctgaa acaaatgaaa agtttagaaa ctactgtaaa caaaggggaa      3780
     ttctacaatc cttcattgcg ccaggccatc cagccactaa tggtatggca gaaagatgtg      3840
     ttcaaacttt gaaatccaag ttaaacaaaa tggaagccga gccaggaact gtgaattcca      3900
     aagttcaacg tattttacta cagtatcgcg caacccccat ggcagatgga caaagtcctg      3960
     gagaattata tcttcacaga cccatcagaa tccgtttaga tgctattcgt ccaacaaaac      4020
     cagtgcgtaa ccaattcaca aataatccag tgcgttcttt agcagtttcg caaaaagtta      4080
     tcgcgcgtgt ctatcgtgat aataagccag catggcaata tggagtagtg ttaaaaaagt      4140
     tcgggaaatt gcattattta ataaagctca ataatggcta tatttttaag cgccacattg      4200
     atcaactgaa aatggttcca aatgatgtgc gcgttgattc tagtgcaagg ccaatcgttc      4260
     caaaaagcag tgcgaaacct gaaattcccc aaaaacgtgt gtctttcgca aaattacctg      4320
     atcaaattga attttttcaa gcccctagtt cggtcgtgtt accttcgcaa gttccagcct      4380
     caaccgcgtc ggaacaaata gttcaaaaat caaccttgcc aaagcaaatc gttcaagaac      4440
     cagctgtggc aggaccgagt cgcaactgca aagaatccat gcaaaaatcg cctgtggttc      4500
     gtaaacctat cgcgccggtt cctaatagtg ttcaaccctg taccgcgccc aaatccgcga      4560
     ttattccagt gaaaacagcc gtgccagtcc ttgttggtaa tcgttcacct aatccgggaa      4620
     caccatctag tccaccaatt attgatattt catcagacaa ggatgagcca agctgtcaag      4680
     tagcagggtc ctcaaaaagt acaccaagcc aagctgaagg tccacaaaag aagttgcaac      4740
     cagataaatt tagtcgggga agaggacttc aaagagatct tcaaactcga tcagctagag      4800
     ttatcaaaac cccagtgcgt tttaaagact atatcacaga actcgattag cacctcaaaa      4860
     attttttttt tttctttctt ttcactttag tgtgaatttt gatgtatata aaaaaaaaaa      4920
     aaaaaaaaac caccgtacca cttataakgt attattattt tctattgtta tatttttttt      4980
     tatctagtca attttttttt taaaattaag taaaatgaca aatttgacaa atcaaatttt      5040
     tcttttttag tggcggtgag                                                  5060
//
ID   Gypsy-16_TrVa-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-16_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-211
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 320-320 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 211 BP; 52 A; 42 C; 36 G; 81 T; 0 other;
     tgttatgtta tgttggtact atattggtag aggtagatgt tgaccatcgg tgcatccatc        60
     tcatgttgag tggtgctctt cggtattcat tcattctgtc attccctatc accgtactta       120
     caattgtcgt atgattctaa ctcactgtca atcctaaaag taataaaatg tgatctcctt       180
     ataatccgtg ttcttgtatt attccacaac a                                      211
//
ID   Gypsy-17-I_NVi repbase;    DNA;    INV; 8802 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-17-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8802
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 771-771 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           666..2768
FT                 /product="Gypsy-17-I_NVi_1p"
FT                 /translation="YNRGERTKRRLFTVRTTNRHIDCSNSFEGTSILFRIS
FT                 ETVRGHLSEMASEASVNDWVMALSNDEIKREAESRGLNTAVSLAELQRRLA
FT                 HEVYIERGIVQPDEELPPSGAAREHDDPPPPYQLSTNVPLLTSSVSGPIAT
FT                 AREQPFHASRTSSPIETERGRDREEQTSTGTVPRVPRRSVLFGDTTQFCTN
FT                 NQQNNSQRDLGYLTLTSDGHVYNSTNFQNVQDRPIINHPRANSTTRLAGNN
FT                 LISSTAMFNTQNQATFNRPSTLAQEVNPNNLISLQTQNLSRNTRHTGNGYV
FT                 STTPREIPARINNFMPPEGQNGYLNNGIARPSHLQLPINNNNNDNRQQYRG
FT                 AYNNNEQPINTERRLIAPTHINAFDFICKWDLKYSGRRDEDSEEFLKRLRE
FT                 GRLIMHISDDDLFGILPFFLQGVALQWYRINSDNWVTFEQFENAWRARFSD
FT                 ADFQFALMENARRRTQGEREPVADYLTYIKAMFNRMIPPLGPVREINLALR
FT                 NMLPRLQTRIDKSEIFTFQELEAIAVRKEKGLMIARTYKPPPSAEDSLLPD
FT                 LAYREQRPQRNIRQQLSNLELDEEQNRARVEHTEPDFTEDALPDEDELNNL
FT                 GYGRDKRFNNNQRQPTNQSPNKNLHNNNRPMTQIQICYNCGKSGHFSRECE
FT                 GPKRAFCYKCGKIGTRFINCPKCNPTEIFCNDCGLIGYLRVNCPECTGNAD
FT                 *"
FT   CDS           2684..6358
FT                 /product="Gypsy-17-I_NVi_2p"
FT                 /translation="SNGNILQRLRINRLPQSKLSRMYGKRRLKSQNKADAA
FT                 WKTEKASLVELNKNLDIYPTKINAVCDEKSCTQKNDEADLKAISEKSGYLT
FT                 NKDKIEPKAICDILNKAPDILNNQRENAEIRDNNFEYLKFTPSQWDILTIE
FT                 EKEQLAFSDYLQDIETVVSEAPEFLIKNSSYKLIRDDLIHEDIYTTDKLYS
FT                 LPLKSPNLLYSTVSIADNKFKALIDSGASKTFIGPKIHKIATKNALLVNKN
FT                 VTGRVTTPLGYTEEIREIIHTPIKFQDRIRVIETRVLDCLDQDCILGIDAL
FT                 HSFGVIADFTNFTYTFGSKPFDRYTFEKRFAETSETAEACYGLRELSPSEE
FT                 KILEEFLNNEIPKSSGKLGKTSLIEAVIDVNNHPAIKQRPYPISPTVETIL
FT                 FNEVDKMLDEDIIERSNSDWSSPVHMARKANGTRRFCLDLRKINAIIKKDA
FT                 YPLPLMGSILDKLRVARYISTIDLSQAFLQIPLEKKSREITAFAVPGKGLF
FT                 HFKRLPYGLSNSPGIFQRLVDSLIGPELQPHVYSYLDDLIIVTETFDEHLK
FT                 WLKVVFDKLKHANLTINKEKSKFCLSEVKYLGYLVNKNGLQVDSEKVAPIR
FT                 EYPVPKTLKQIRRFIGMTSWYRRFIENFASLIQPISSLLKKDKKLEWGPEQ
FT                 QTAFETIKERLMTAPILMRPDFSKPFTIQVDASTVGLGSVLTQIIDDKERV
FT                 IAYASRTITDAEKNYTTTELECLGVIWAIEKFRGYIEGTHFKVITDHSSLQ
FT                 WLKSLKKPVGRLARWSMYLTAYDVDIEHRKGAMHHVPDALSRMYENQLDEV
FT                 NTLNDDNDDWYKGRIDEVRKNPKKYHNWHIAGDILYHKTEDTFLDTIKRDQ
FT                 SIWKLVVKSKDRDRVLFEAHDDTQSGHLGIDKTHARIAKDYFWPSMYKDIV
FT                 NYVKRCDVCQKVKPEQFAPPGMLGQRIIEHPWSVVAADIVGPLPRSKKGKR
FT                 YLLVIQDLFTRWIEIQPLREATGKSIKDALHDLIITRWGTPRVLITDNGTE
FT                 FINKTLIEYTKQLNIKHSTTPPYHPQANPVERVNRVLKTMITAFIEQDHRE
FT                 WDNHILDFRFAFNTSKHTSTQVTPAFLNFGREPLPIHSLRKEIENSDIIER
FT                 GNVDQWAERLYRLRAIRDWVVENSENAHNRQANYYDKSHRNLTYKVGDSVL
FT                 MRNRVLSDMSKNFAAKLAKPYKGPYTVTKVLSPLVYELVSADNQIVSKIHI
FT                 CDLKPYRQNTCIPX*"
FT   CDS           6613..8085
FT                 /product="Gypsy-17-I_NVi_3p"
FT                 /translation="MERQQEPDTTTEEEERLLLEVDSDDAITIDSDIEVLS
FT                 LPPPSPADVGEPGPGSPPRRGESPEDDFDFIPRENADNGAAPQQQAEDADE
FT                 VNSTATTPRARSPDNLSDRMEGDFDQQLPASPEPEPIEEEETNERPEDIQR
FT                 RKEIERLRRMVKEQTPDNPLLPLLGHEEEVAEFFYENPPILSAFNKVIKNI
FT                 VEKVRQRPCILRGSSLCIGKPEVLPRAPRRSTMIYELNPAVDQDTQTIAVP
FT                 QVSSGTQTTLREPAQPLRTSIATQTPQLNFARPSLVSTATQTRPENLAGSL
FT                 QASTSVQIQAEVHVEAVAPEHPPELSTEIQTPPTTPNETASERPFPPRNEQ
FT                 ATENDIENAGANAIVDTPMEVEPTTPPAQAISGRRAGDPTLTGWMRINGRD
FT                 VNVLPSLPGCFNCSRRHHYRNCPHPATVFCYRCGRRNVTVRDCPHCAPGWR
FT                 EEGPYIRRLRTHVPRDQPLPPREGLDELQQFSQRPRHTFTRMEPY*"
XX
SQ   Sequence 8802 BP; 2926 A; 2084 C; 1825 G; 1962 T; 5 other;
     aactagcgcc ctataacgtg tggattaata gaaaagaata tcgtgatcgg taaaatcgct        60
     gtctcgagac aaaggaaaca accagtgtga gtgaaatttg agagcgcgtg tgtgaaaatt       120
     aattgcgtaa agttaaaaat cgtagagtag ttgactggat atctaaaata attttgtagc       180
     gacacaaatt tctggctttc taacttaaaa atatatctac tagttacctc taaaaaacta       240
     atatttctcc cggatatcta ttgctagcta cgaaaaatct attctcgtat agattcctat       300
     aattatacaa gtagcgagct taaaaagcac gtaaataact tacgtagtag aacggaaaag       360
     gttaaaatct cacgaagcag gcaatctcga cacaacggga aaattcctac gaaacaaagt       420
     cgagaaaggt cgcaacgtgt cgaaaacaaa ttcttagagc gcgagctcaa acgtacctcg       480
     ggtcataaag ataaaaaaaa acaaagggac actgttgccg agcggctcac aaacagccgg       540
     cgacacgtgt gtccgcgccg gtcgaagatc aacgcgaacg cgcgggtcga gtaacgtaaa       600
     cactctcgaa acgaacttcg gcaatacgtg gaactgcaca caccgagatt agtacgtaag       660
     agtagtacaa cagaggtgaa agaacaaagc ggcgactgtt tacagtacgc acgacaaacc       720
     gacacattga ttgctcgaat tccttcgagg gaacttcgat actatttagg atatctgaga       780
     ctgtgcgagg tcacctttcc gaaatggcta gcgaagcctc agtcaacgat tgggttatgg       840
     cattgtcgaa cgatgaaatt aaacgcgaag cggagagccg cggactaaat acagcagtca       900
     gcttagccga actgcagagg cgtttggcac acgaggtgta cattgagagg ggcatagtgc       960
     aacccgacga ggaacttcca ccgtcaggcg ctgcgcgcga gcacgacgat ccgccgcccc      1020
     cctaccagct ctcaacgaac gtcccactgc taacatctag cgtatcgggc cctatagcga      1080
     cggcgcgaga gcaaccgttt cacgcgtcgc gaacatcgag ccctatagag accgaacgcg      1140
     ggcgagatag agaagagcag acctctacgg gtacagtacc acgtgtaccg agacgcagcg      1200
     tattattcgg cgacactaca caattctgca caaataatca gcaaaataat agccaaaggg      1260
     acttaggtta tctaacatta acttcagatg gccatgttta caattcgaca aattttcaaa      1320
     acgtgcagga taggccaata ataaaccatc cgcgagcgaa cagcacaacg aggttagctg      1380
     gaaataattt aatttcatcc acggctatgt ttaacacaca aaaccaggct accttcaacc      1440
     gaccttctac attagcacaa gaagtcaatc ctaataattt aatatcatta caaacacaaa      1500
     atttatcgag aaatacgaga catacaggga atggttatgt tagcacgaca ccacgtgaaa      1560
     ttccggccag aattaataat ttcatgccac cggaggggca aaatggctac ctaaataacg      1620
     gaatagctag accgtctcac ctacaattac caattaacaa taataataac gataatcgac      1680
     aacaatatag aggcgcgtac aataataacg aacagcccat taacacagag cgtaggttaa      1740
     tcgcacctac tcacattaac gcttttgact ttatttgcaa atgggactta aaatactctg      1800
     gaagacgcga cgaagatagt gaagaatttt taaaacgact aagggaaggg cgcttaatca      1860
     tgcacatttc ggatgatgat ttatttggaa tattrccgtt tttccttcaa ggggttgcct      1920
     tacagtggta cagaataaat tcggataact gggtcacgtt cgagcagttt gaaaacgcat      1980
     ggcgtgcacg tttttcagac gcagattttc agttcgcgct catggaaaac gctcgacgcc      2040
     gaacgcaagg cgagcgcgag ccagtcgccg actacctcac gtatatcaaa gcaatgttta      2100
     atcgcatgat acctccgcta ggaccagtcc gtgaaataaa tctagctctc cgaaatatgc      2160
     taccgagatt acaaacccga atcgataagt ccgaaatctt cacgttccaa gagctggaag      2220
     ctattgcagt acgcaaagag aaaggcctaa tgattgcgag aacatacaaa ccacctccga      2280
     gcgccgaaga ttctctccta ccggacttag cttatagaga acaacgcccg cagcgtaata      2340
     ttagacaaca attatctaac ctcgagctag acgaagaaca aaatcgagca cgcgtagaac      2400
     atacagaacc ggactttacg gaggatgcct tgcctgacga ggacgaatta aataatttag      2460
     gttacggacg cgacaaacgc tttaacaata accagagaca accaacaaac caatcaccta      2520
     ataaaaacct gcataacaac aacagaccaa tgacacagat acagatctgt tataactgcg      2580
     gaaaatccgg acatttctcg cgagaatgcg aaggcccaaa acgcgcgttt tgctataaat      2640
     gcggaaaaat cggaacacgg tttataaatt gcccgaaatg taatccaacg gaaatattct      2700
     gcaacgattg cggattaata ggctacctca gagtaaattg tccagaatgt acgggaaacg      2760
     cagactaaag tcgcaaaata aggccgatgc ggcttggaaa acagaaaagg cctcactggt      2820
     cgaattaaac aaaaatttgg atatctaccc gacaaaaata aacgcagtct gcgacgaaaa      2880
     aagttgcaca caaaaaaatg acgaggctga cttaaaagct atctccgaaa aatcaggtta      2940
     tctaactaat aaagacaaaa ttgagccaaa ggctatctgt gatatcttaa ataaagcacc      3000
     ggatatctta aataatcaac gagaaaacgc ggaaattcga gataataact ttgaatattt      3060
     aaaattcaca ccgtcgcaat gggatatctt aactatcgaa gaaaaagaac aacttgcgtt      3120
     ttcggattac ctacaagaca tcgagacagt cgtaagcgaa gcacctgaat ttctaataaa      3180
     aaattcaagc tataaattaa ttagagacga tttaattcac gaggatatct acacgacgga      3240
     taaattatac agcttacctt taaaatcccc gaacctactt tactctaccg tcagcatagc      3300
     agacaataaa tttaaagctc tgatagacag cggagcgagt aaaacgttca taggaccgaa      3360
     aatacataaa atagcaacga aaaacgcact attagtgaac aagaacgtaa ccgggagagt      3420
     cacgacgccg ctaggttata cagaagagat acgtgaaatt atacacacac caattaaatt      3480
     ccaagataga atacgagtaa tcgaaacacg agttcttgac tgcctagatc aagactgtat      3540
     tttagggata gacgcgttac acagtttcgg cgtaatcgcc gatttcacta atttcacgta      3600
     caccttcggt tcaaaaccgt tcgatagata taccttcgaa aaacgtttcg cagaaacgtc      3660
     ggaaacggcg gaagcatgtt acggcttacg tgaactyagt ccctcggaag aaaaaattct      3720
     cgaagaattt ctaaataacg aaatacctaa atcatccgga aaactcggga aaacttcgct      3780
     aatagaagcc gttatcgacg tgaataatca ccctgcaatt aaacaaagac cttatccaat      3840
     atcaccgacc gttgaaacaa ttttatttaa cgaagttgac aaaatgcttg acgaggacat      3900
     catcgaacgt tcgaacagtg attggtcatc accggtacac atggcgcgca aagccaacgg      3960
     cacgcgcaga ttctgcctcg atttgcgaaa aattaatgcg attattaaaa aggatgccta      4020
     tccattaccg ctaatgggat caatattaga taaactccga gttgcgagat acatttctac      4080
     aatagatctc agccaggctt tcttacaaat tccgctagaa aagaaaagca gagaaattac      4140
     agctttcgca gtaccgggaa aaggactatt ccactttaaa cgtttgccat atgggttatc      4200
     taattcacca ggcatctttc aacgcctagt agattcctta atcggacccg aattacaacc      4260
     tcacgtttat tcatatcttg acgatttaat catcgtcaca gaaacgttcg acgaacacct      4320
     aaaatggcta aaggttgtct tcgacaaact taaacacgct aacttaacaa ttaataaaga      4380
     aaaaagcaaa ttttgcctat ccgaagtaaa atatcttggc tatctagtaa acaaaaacgg      4440
     acttcaagtc gacagcgaaa aagtcgcgcc tatacgcgag taccccgtac ctaaaacgtt      4500
     aaaacaaata cggagattta tcggaatgac atcatggtac cgcagattta ttgaaaattt      4560
     cgcgtcatta atacagccaa tctccagtct actaaaaaag gataaaaagt tggaatgggg      4620
     accagaacag caaacggcat tcgaaaccat aaaagaacgt ttaatgaccg ctcctatatt      4680
     aatgcggccc gatttttcaa aaccttttac catacaagtc gacgcaagca ccgtagggct      4740
     aggtagcgtc ttaacacaaa tcatagacga caaagaacga gttatcgcgt acgcaagccg      4800
     aaccataaca gacgccgaga aaaattacac gaccacagag ttggaatgtc tgggggttat      4860
     ctgggcgatc gaaaaatttc gaggttatat agagggcaca cacttcaaag tcattacgga      4920
     ccatagcagt ctgcagtggc taaagtcact taaaaaaccc gtgggtaggc tagctcgctg      4980
     gtcgatgtat ctaacggcat acgacgtcga tattgaacat agaaaagggg ccatgcacca      5040
     cgtacccgac gcgttatcgc gcatgtacga aaaccaactc gatgaggtta acactcttaa      5100
     cgacgataac gatgactggt ataaaggaag aatcgacgaa gtacggaaaa atcctaagaa      5160
     atatcataat tggcatattg ccggggatat cttgtatcac aaaaccgaag atacgttcct      5220
     tgatacgatc aaacgcgatc aatctatctg gaagctcgta gtaaaatcaa aagaccgaga      5280
     ccgagtactg ttcgaagcac acgatgacac gcagagcggc cacttaggca ttgacaaaac      5340
     acacgcacgc atagcaaaag attatttttg gccaagcatg tataaggata tagtaaatta      5400
     cgttaagcga tgcgacgtgt gtcaaaaagt caaacccgag caattcgcac caccgggaat      5460
     gctaggccaa cgcattatcg aacacccttg gagcgttgta gcagccgaca ttgtgggccc      5520
     gctgccacgt agcaaaaagg gaaaacgcta tctgttagta atacaggact tattcacccg      5580
     ctggatagaa atccaaccgt taagagaagc caccggaaaa tcaattaaag acgctttaca      5640
     cgatttaata ataactcgct ggggaacacc acgagtgctc ataacggaca acggcacaga      5700
     attcattaat aaaactctaa tagaatacac aaagcaactt aatatcaaac attctaccac      5760
     accaccctat cacccacaag ctaacccagt agaaagagta aatcgcgtac taaaaaccat      5820
     gatcacggca tttatcgaac aagatcaccg agagtgggac aaccacattt tagacttccg      5880
     tttcgcattt aatacctcya aacatacgtc tacgcaggtc actccagcct tcctaaattt      5940
     tggacgcgag ccgttaccga tacactccct gcgcaaagaa atagaaaact cagatatcat      6000
     cgaacggggt aacgtagatc agtgggcaga aagactctat agattaagag cgattagaga      6060
     ttgggtcgta gaaaattcgg aaaacgcgca caatcgccaa gcaaattact atgacaaaag      6120
     tcaccgcaat cttacttaca aagtaggcga ttccgtctta atgcgtaacc gagtcttgtc      6180
     agacatgtca aaaaacttcg cagcaaaact ggcgaaaccg tataagggac catacacggt      6240
     cacaaaagtt ctttcaccac tggtgtacga gttagtttcg gcagacaacc agatagtctc      6300
     aaaaatacac atctgtgacc taaaacctta caggcaaaat acctgcatcc ctgmatagac      6360
     acctcaggct acctatcatc atcatcayag ataacattta ctatcacaac ataaggttat      6420
     ctacaacgat cattaataaa ctgtatgcgg acactggcta ccttatttgg atttattgat      6480
     tatcttgtta tgtaagtaca cgaaaattta aacacacgat aattgtcata tcgcggtata      6540
     ggcgaagctg gttatctaat gtaaaatcta gatcaacgag ggttatctta ctgctgatta      6600
     caaacttaca ccatggaaag gcagcaagag ccagacacaa cgacagaaga ggaagaaagg      6660
     cttctgctag aagtcgattc tgacgacgcc attacgatag actcggacat cgaggtactg      6720
     tcgctacctc caccgtcgcc cgccgatgta ggcgagcctg ggccaggctc tccgccacgg      6780
     aggggggagt ctcccgagga tgacttcgat ttcattcctc gtgagaacgc tgataacggc      6840
     gcagcaccac aacagcaagc tgaagacgcc gatgaggtga actcgacggc aaccactccc      6900
     agagcccgct cacctgacaa cctgagcgac cgcatggagg gcgatttcga ccaacaatta      6960
     cccgcaagcc cagagccaga acctatagaa gaagaggaga ccaacgagcg cccagaagat      7020
     atccagaggc gcaaggagat cgaacgctta cgtcgtatgg tcaaggagca aacaccagac      7080
     aaccctctac ttcccttgct gggacacgag gaggaagtgg ccgaattttt ctacgaaaac      7140
     ccgcccatcc tgtcggcttt caacaaggtc ataaaaaaca tcgtcgaaaa agtcagacaa      7200
     agaccgtgca tactccgggg atcttcccta tgcattggaa aaccagaagt actacctcgc      7260
     gcaccgagaa gaagcacgat gatctacgag ctcaacccag cagtggacca agacacgcaa      7320
     accatcgcgg ttccgcaagt ttcctcggga acgcaaacca cgctcagaga acctgcccag      7380
     cctctgcgaa cctccatcgc aacgcagact ccgcagctga atttcgctcg accgtcgcta      7440
     gtttccaccg caacgcagac tcgacccgaa aatctagctg gatccctgca ggcctccacc      7500
     tcggtgcaga tccaagccga ggtacacgtc gaagccgtag ctcccgaaca cccgccagag      7560
     ctatccacag agatccagac acctccaact acacccaacg agacagcatc ggagagaccg      7620
     ttcccgccaa ggaacgaaca agccaccgag aatgacattg agaacgctgg ggctaacgcc      7680
     atcgttgaca ccccgatgga agtcgagccg acaacaccac ctgcgcaagc aatatccgga      7740
     agacgcgcgg gagatcccac actcactggg tggatgcgca ttaatggccg tgacgtcaac      7800
     gtcctgcctt cgctacctgg atgtttcaat tgcagtagac gccatcatta ccgcaattgc      7860
     ccacatccag ccaccgtctt ctgctaccga tgtggccgca ggaacgtcac agtacgcgac      7920
     tgtccacact gcgcaccagg atggcgagag gaagggcctt acatccgtcg cctcaggact      7980
     cacgttcccc gtgaccaacc gctccctccc agagaaggcc tcgacgagtt gcagcagttc      8040
     tctcaacgac caagacatac cttcacgcgt atggagccat actgaggaag aaccgtggtt      8100
     atctaatgta gaaagttatc ttatttttgc taccttttat attcttgttt accttttcta      8160
     gattattaat tttgttcaaa agtattattt agtttgaagt tcctccgtct gattaaccgt      8220
     taatcagacg catcgcgaaa gttagcgttc aatagtttgt aacgcgcata aagtggttgc      8280
     cttattatta tcaaaatagt cgactgacta ggttatctaa taattaagaa gagtgattat      8340
     aacgcaccaa agtgtcctta ggtttgccaa agctatcttt attataattc attgtagttc      8400
     ctcttagata tatcgattat ttaaaataag gttgtctctg tgttaccata gtacttaagt      8460
     aatattatta aataaataat cttttctact tttctatcaa atcaagcgtc atctgattac      8520
     taaaataaac ggcctgtgtc ctcatcacct gaacctactc cgttctatgg ggcttccacc      8580
     cgccccacta ggttaagtta gaattaagtt agtcttaaga attagcttta agaaaaccac      8640
     ttgcttttcc caccccttga tgagttgtgt gtgagttaaa gagagacggt tgatctgcca      8700
     cgcgtgagat tagccttgag actcgctttc acccgcgggg tcggccgggg agtttgacgg      8760
     agcgattcgc tggctcgctc ctttcctcac ggaggggaga gt                         8802
//
ID   Gypsy-17-LTR_NVi repbase;    DNA;    INV; 1626 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1626
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 772-772 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1626 BP; 351 A; 401 C; 496 G; 377 T; 1 other;
     tgtaacacgg caaaatttcg ccgtgtaaca acgacgttcg acgcggtcgg ggtagagtgt        60
     ctcaaggcta cctgtgtgaa tgagagagtg aacgtgtcta agtgcgtcgt ttattttttg       120
     agtgaacgac gagagaggag cagtggctgc gacggacgaa aaggacaacg cacgtcgccg       180
     actcgtgagt gagagatgcg aggagacgac gagcaacgtt ggcgcagcag cagcgacctt       240
     tcacctcgac agggcgttca agtcggcccc gcgcaccgta agacagccga tgcaggtggc       300
     ggagcccttc gtggggtcta cctacgtgag cgtctgatgc agcaggacca gcgtgatggc       360
     agctcgcccg cacgaacgcc aggaacaaaa actacagcgt ctcgcgttcg tagtgacaga       420
     tgccgcccga gtcaagggcc ctgacgacgg ggcattggga gtcactacgg gttccgcagt       480
     caagagttat cttggttgtc tgcgggtgaa aggctgtctg tgtgctacga gaattcgaat       540
     tgaatttcgc ggctatctgc ttcgacatcg tgtccgcggg gctatctgcg cgcatgcgcg       600
     accgcgcgac tcggcaacgg cgcgtgaacc gatagtgttg cgagcgagcg ggccgtcggg       660
     ccgcgacgcg ttgaccaatc agcgcgcgcg cggtacggcg gctagggaga gcagagtggc       720
     ggccgcgagc cgcgagcgct cgagccggca ctcgcctgcc ccgactgctc ccgaacggac       780
     gtgcctcaac ttcaacttca cccggtgttc cagctagaag gatttaaggt cagtgaatcg       840
     ttttccgttt tctccggtcg tatccgtctc gcgggtgaac ggcagttcca cgttcggttt       900
     cgcgaacgaa aaggttatct cgcgtacgcg ttagttacct ccggatcgct gtctttatct       960
     ctttatctct ttgtattgtg ttccgtcgaa taaagggtta tctcgtttgt acgggttatc      1020
     ttctcgagta ataagcgaag tgtagaatta aggattttga tgatagaagt gtagagttat      1080
     tttgtgaaaa cgtaggttaa tacttggcgc cgacacctgg acgcacgagg cgtaaggtgg      1140
     tcgggcaatt ctaggataag tcgttcggcg tttgcggaat tcgcgtgcga cgtaattgtg      1200
     tgagtgagtg agagacgaaa agtgcgagcg agtgtgtgtg atctggttgc ttcttgagcc      1260
     ttgagacgcg cgcgagtcac gcgggatatc tttcgtgtac gggtatttgc ttgtcggagt      1320
     tgcctttgtt cacgggttat cttagtaatt tgtacgagtc gattataaat tgtaagaatt      1380
     tawtaagaat atacagttcc gtctgataaa ccacgtgtct ctattatccc gaaccgccct      1440
     ctctccttac cgttttcggg gctgcagcta gccgagcaaa ccacgtgcaa aaaaccctcg      1500
     cgccgggaaa caaagagtcg cgagactctg gcgctcacga ggagcgcctg gcgccaccgg      1560
     gttattttcc aagccccggg cgagggattg caccataact ggggtagcac gaaaacccca      1620
     gttaca                                                                 1626
//
ID   Gypsy-170_AA-I repbase;    DNA;    INV; 7335 BP.
XX
AC   supercont1.294;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-170_AA_;
KW   Gypsy-170_AA-LTR; Gypsy-170_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7335
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.294; Positions  675181  667847.
XX
CC   Positions [5194-5670] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           725..2905
FT                 /product="Gypsy-170_AA-I_2p"
FT                 /translation="MASAKLTYDQAAELLKGLYYELRIEFLFEDELDFELE
FT                 SRGVILPRGCDVTRKRKMLRDTMKAEKDGTAEKWQQIIKGDTEREVKICMQ
FT                 KFGELQTLVRQNSEEDTKKMCMSRLVHVGVRIMTILTGSRSSPNLFGSLQN
FT                 ALVDLVEFMEESAMINSTIETTEINPPEKSPEAEVENVNNIPLIEHFQTEA
FT                 TEDSRQPMSIFTQEDLEWVHSLQRRIVDLEYELKRQKEVREIATQTVDEED
FT                 PLIQYPNSQFQTMNSWSVSSFPSQNLPPSMTTFQPPRQNSTFTIQNHPNQP
FT                 GLSTAQTQQVLRTEIPAQASMLNTQGSFIPSYPNISNPQPSYLPHNPSANT
FT                 QPVNGNAAVPTFLNRPHQATHHLSNHSLLPTYQPRHTLPVSKWNITKYSGD
FT                 DQGLQLNEFLEHVRALSFAEHVSERELFESAVHLFTGSALKWYMSQRATNR
FT                 LLDWQHLVFELRRTYMHPDLDALIKMKIYQRRQQKQESFHEYYFEIEKLFR
FT                 SMSMQIPDYEKVQILQQNMRIDYKRQMTFLPITDLETLVAAGQKLDALNFS
FT                 AYNKVFGSDKTVHAVEDNFKPKGTNGPNAPQPTRSRQPNPVVPHPFQKGFN
FT                 RNNNSNKQNPQNQLNSTSNRSTANPPSTEAQNAGVSTSTSSSSSSSQTLAG
FT                 PSTYPLRPQLTLEELVNRHTPPPNNTCFNCRRIGHEAPMCRQQRAIFCSNC
FT                 GLHGFPTNYCPYCVKNGRSASENRRSQ"
FT   CDS           3304..6048
FT                 /product="Gypsy-170_AA-I_1p"
FT                 /translation="MDFWEKFHIIPTLLQKDIVQKKETFAVLDSKQTKEDA
FT                 ETNLTEEQIHEIEKIKQLFLTAQADNLTLTNRAIHQIVLKEEWKHKPPVRQ
FT                 FPYVMSPKTQSLVAVELKRLLDLGIIERSNSEWSLNCVPVIKPNKVRLCLD
FT                 ARKINERTVRDAYPLPHPGRILGQLPKARFLSTIDLSEAFLQIPLEKESRK
FT                 FTAFSVQGKGLFQYTRMPFGLINSPATLARLMDQVLGHGELEPFVFVYLDD
FT                 IVVVTDSFEHHLELLQEIAQRLKLANLSINLSKSKFGVPEIPFLGYLLSVD
FT                 GLQTNPEKIRPIVEYERPTTVTKLRRFIGMINYYRRFIPDFSGVTAALTDL
FT                 LQTKHKNIHWNEAAERAFCLIKEKLISSPILGSPDFNREFVIQTDASDVAV
FT                 AAVLSQRQEDGEKVISYYSHKLTTPQRNYHAAEKEALAAIMAIEAFRGYVE
FT                 GYHFTLITDSSALTHILSTKWKVGSRCSRWALNLQQFDMTVVHRKGKDNVV
FT                 PDALSRSIATVQENKTLSWYTSLMQKVKDRPDAFVDFRIENGVLKKFVTAR
FT                 EKGHDCRFEWKIIPTPESIDAILHSSHDDCFHLGFEKTLNRIKQRYYWPKM
FT                 SSQIRKYVQQCSTCKEVKGSSIPVVPEMGKQRLASQPWKIISADYVGPLPR
FT                 SRRGNQYLLVIADYFSKWILLQPVKSIQSNSLCTILKEQWFLKNSVPEIII
FT                 TDNASCFVSKEFKHLLDQYKIVHWLNSRYHSQANPVERVNRTINAAIRTYV
FT                 KEDQRLWDTRTTEIEMVLNTSVHSSTGYTPYYITHGHELSEYGPDYQRARH
FT                 QEPLNEAERVERRKTQFSRIYDIVQRNLAKSHDASRQRYNLRHKHFAKAFQ
FT                 PGQLVYRRNMKQSNAGEWYSAKYGSQYLPCTVSRKIGTSSYELVSSDGKNL
FT                 GIWPAAHLKPG"
XX
SQ   Sequence 7335 BP; 2309 A; 1610 C; 1469 G; 1947 T; 0 other;
     ttttgaaaag tattgtttta tatttgtcca gcattcacgg gaagataaag tcctcttaga        60
     gaccatttta aaacgaccct gctagtcgga acaaagaact ctatagttac aattggcgcc       120
     caacgaaaaa taaaagtaaa aaaaagtgtt ttgcctcaca aaacactttc ccttggtctc       180
     tgggagagat tttattcatt ttcattctaa aattcacgtc tcggaacaga tatccaccat       240
     tatcacattt aatacgaaac aaaaacctaa atttcattga tttgaactgt gcggatgatg       300
     ataaaacttc acccttatat aatctcaaaa agcatagata tacagattgg gaaatactgt       360
     tagcacccag agcagaattt ccattctaaa atagtctcag catagttctg gcgctcaact       420
     tcaattgctt caattcgttt caatttttca tttttttttt ttcaaatgta ttattacttt       480
     acttggtgtc tctagagtga tatattcata tttttttctt atttttttct ctccgtgcac       540
     taaatacctt tacactattt gcaattttga aatttaattt tgaagtcctc caagacgcaa       600
     cgtcgttttt tgtacttact tctaagttgg tagaattttc ctgcaaaatt tctttcattt       660
     tcgagcatta aaataatcag tgataaatag tttattttta atttacctat aagattaaaa       720
     caaaatggcg agtgctaagc ttacttatga tcaggcagca gagttattga aaggattata       780
     ttatgagctc cgaattgaat ttttattcga agatgaactc gattttgagc tcgaatcccg       840
     tggcgttatt ctacctagag ggtgtgacgt aacacgtaaa cgcaaaatgc tgcgcgatac       900
     aatgaaagcg gaaaaggatg gtacggcaga aaaatggcag caaataataa aaggcgatac       960
     ggaaagggag gtgaaaattt gcatgcaaaa attcggcgag cttcagactt tagttcggca      1020
     gaacagtgaa gaggacacca aaaagatgtg tatgagtcga ttagtacacg ttggagtacg      1080
     gataatgacc attctaacag gttcccgtag ttctcctaat ctttttggaa gtttacaaaa      1140
     tgcccttgta gatttggtgg agtttatgga agagtctgcg atgattaact ctactatcga      1200
     gactacggaa ataaatccac cggagaagtc accggaggcc gaagttgaaa acgttaacaa      1260
     tataccgctt atagagcatt ttcaaacaga agcaacggag gatagtcgac aaccgatgtc      1320
     aattttcacc caagaggacc ttgaatgggt tcattcatta caaaggcgaa tcgtcgatct      1380
     agaatacgaa ctaaagcgtc agaaggaggt gcgtgaaata gccacgcaga ccgttgacga      1440
     agaggatcca cttattcaat atccaaattc acaatttcaa acgatgaatt cttggagtgt      1500
     gtcgtctttt ccatctcaaa atcttcctcc cagtatgacc accttccagc cccccaggca      1560
     aaactcaacc tttacaattc aaaatcaccc aaatcaacct ggtttgagta cagctcaaac      1620
     ccagcaagtc cttcgtaccg agattcccgc acaagcttcc atgttaaata ctcaagggtc      1680
     ctttattccc tcctatccaa atatctctaa tcctcagcct tcttatcttc ctcacaatcc      1740
     atctgcaaac acacaaccag taaatgggaa tgcagcggtt ccaacattct tgaacagacc      1800
     acatcaagcc acgcaccatc tttcaaatca ttccttattg ccaacatacc agcctcgcca      1860
     cacgttaccg gtttcaaaat ggaacataac caaatacagt ggcgacgatc aaggcttaca      1920
     gctgaacgag ttcttggaac acgtccgtgc gctgtcgttc gccgagcacg tatctgaacg      1980
     cgaattgttc gaatcagccg ttcacttgtt taccggctca gctctcaaat ggtatatgag      2040
     ccaaagagcc acaaatagat tgttggactg gcagcaccta gtatttgagc taagaaggac      2100
     atatatgcac ccggatttag acgcacttat caaaatgaaa atctaccagc gtagacaaca      2160
     gaaacaggaa agcttccatg aatactattt cgaaattgaa aaactttttc gttcaatgag      2220
     catgcagatt ccggactacg agaaagtcca gattttgcaa caaaatatgc gaatagatta      2280
     taaacgccaa atgacgtttc ttccaatcac cgatcttgaa actttggtgg cggctggaca      2340
     aaaacttgat gcactgaact tttcggccta taataaagtg tttgggtccg acaaaaccgt      2400
     gcatgctgta gaagataatt tcaaacctaa gggaacaaac gggccaaacg caccacaacc      2460
     cacaaggtcg cgtcaaccga atcctgtggt tccgcaccca tttcagaaag gatttaaccg      2520
     aaataacaat tcaaataagc aaaatccaca aaatcaactc aattccactt ccaaccgttc      2580
     cactgcaaat cctccgtcca cggaggcgca aaatgctggg gttagcacgt ccacttcttc      2640
     ttcttcatca tcctcgcaga ctcttgcagg tccttcaaca taccccctta gaccacaatt      2700
     gacattagaa gagttagtga acagacacac tccgcctcct aacaacacat gcttcaactg      2760
     ccgaaggatt ggtcatgaag cacctatgtg tcgacaacaa agagcaattt tctgttcaaa      2820
     ctgtgggctg catggtttcc ccaccaatta ctgtccgtat tgtgtaaaaa acggcagaag      2880
     tgcgagcgaa aatcgccgtt cgcagtaacc tcaggcgtaa atacatcaat ccatcagcca      2940
     cagcccccac tatactggga gtacgctgat ggaagtatat accaagaacc cactgaaatt      3000
     tgcgaaatta catttcctta tgtcaatgat aaacgtcctt atgttgcgat taacctctac      3060
     catcttacac tcaatgcctt gttggacagt gggagcaatt acacgttgat aagtggcaaa      3120
     attttcaaca aattcagaaa aatcaaactc actcgcccca cgaaggacat tcaacttcga      3180
     tcagcttgtg gaaatcgact gactgtcctt ggtcaagcgc aattcccttt taaattcaga      3240
     aatcaagtga aattgatttc gaccatagtg gtcgaggatt tgtgcattga ttgtatatgt      3300
     gggatggatt tttgggaaaa atttcatatt atacctactt tgctacaaaa ggatatagtt      3360
     caaaaaaagg aaacatttgc cgtgttggat tcgaaacaga ctaaagagga cgctgagacc      3420
     aatttgacag aggaacaaat ccacgagata gaaaagatca agcagttgtt cttaactgct      3480
     caggcagaca acttaactct cacaaatcgg gcgatccacc aaatagtctt aaaggaagaa      3540
     tggaaacaca aaccaccggt tcgccaattt ccttacgtta tgtcccccaa gacacaatca      3600
     ctggtagctg tggaactgaa gcgattactg gatttgggaa taatcgaaag gagtaattcc      3660
     gagtggtcat tgaattgtgt gccggttatt aaaccgaaca aggtacggct atgcctcgac      3720
     gcacgcaaga tcaatgagag aacggtgcgg gatgcgtacc ctttgcccca tccgggtcgt      3780
     atcttaggac agctccctaa agccagattc ctctcgacta tcgatctgtc cgaagccttt      3840
     ctccaaattc ctttggaaaa agaatccagg aaattcacag cttttagtgt ccaaggaaaa      3900
     ggtttatttc aatacactcg aatgccattc ggactgataa atagcccggc aactttagct      3960
     aggctaatgg atcaggtcct tggtcatgga gaactagaac ctttcgtatt tgtatacctc      4020
     gacgacatcg ttgtggtaac agactcgttc gaacatcacc tagagttgct ccaagaaatt      4080
     gcgcagcgat taaagctagc taaccttagc atcaacctta gcaaatccaa atttggagtg      4140
     cctgagatcc cgtttttagg atacctcctc agtgttgatg gtctccaaac aaatccggag      4200
     aaaattagac ctatcgttga gtatgaacgt cctaccacgg tgaccaaact ccgaagattt      4260
     atcggcatga taaattatta tcgaagattc attccggact tcagtggagt caccgcggca      4320
     ctaacagacc tacttcaaac caagcataaa aatattcatt ggaatgaagc agcggaaaga      4380
     gcattctgtc tgattaaaga aaagctcata agttctccga ttcttggaag cccagacttc      4440
     aatcgggaat tcgtaattca aactgacgcc agtgacgtag ccgtggcggc tgttctgtcc      4500
     caacgtcagg aagatggaga aaaagtaata tcatactact ctcacaagct taccactcca      4560
     cagagaaact accacgcagc cgagaaggaa gctctagccg caattatggc tattgaggca      4620
     ttccgtggct acgtggaagg gtaccatttt acattgatta ccgattcatc tgcgcttacc      4680
     cacatcttaa gtaccaaatg gaaggtaggg tcacggtgca gtaggtgggc actaaattta      4740
     caacaatttg acatgactgt cgtccaccgc aaaggaaaag acaatgttgt accagatgca      4800
     ttgtctcgca gcatcgccac agtccaggag aataaaaccc tgtcttggta tacctctctc      4860
     atgcagaaag tcaaagatcg gccagacgcc tttgtcgatt ttcgcatcga aaatggggtg      4920
     ttgaaaaaat ttgtcacggc tcgtgagaaa gggcacgatt gccgattcga atggaaaatc      4980
     atacctactc cagaatccat cgatgccata ctgcattcca gccacgatga ctgcttccac      5040
     ctcggttttg agaagaccct caatcgaatc aaacagcgat attattggcc caaaatgtcg      5100
     tcacagattc gtaaatacgt tcagcagtgc agcacatgca aagaagtaaa aggctcgtcc      5160
     attcccgttg tacctgaaat gggcaaacag agattagcat cacaaccatg gaaaattatc      5220
     tctgcagatt acgtaggtcc ccttccacgc agtcgtcgcg gtaatcagta tttgttggtg      5280
     atagcggatt acttctctaa atggatacta ttgcaaccgg taaagagtat ccaaagtaac      5340
     agcctgtgta cgattctgaa agagcaatgg ttcttgaaaa actcagttcc agagattatc      5400
     attactgaca acgcaagttg ttttgtctct aaagaattca agcacctttt agatcaatac      5460
     aaaatcgtac actggttgaa ctcgcgatac cattcccaag caaatccggt tgagagagta      5520
     aaccgtacca ttaatgcagc tatccggaca tacgtgaaag aagaccaacg cttatgggac      5580
     accagaacca ctgaaattga aatggtgttg aatacgagtg ttcactcatc tacaggctac      5640
     acaccttact atatcaccca cgggcacgag ctatcggaat atggtcccga ttatcagcga      5700
     gctcgacatc aggagcctct gaacgaagcg gaaagggttg aacgacgaaa gacacagttt      5760
     tctcgtatct atgacatagt tcagagaaat cttgcaaaat cccacgatgc ttctcgccag      5820
     cggtataatc tacggcataa acatttcgca aaggcgttcc aacccgggca gctggtatat      5880
     cgtcgtaaca tgaagcaatc caacgcaggc gagtggtata gcgctaaata tggatcgcaa      5940
     tatctgccgt gtaccgtaag ccggaaaatt ggtacatcct cgtatgaatt ggtttcatcg      6000
     gatggcaaaa accttggaat ttggccagcc gcccacctca agccaggata accaaacttt      6060
     ccaatccaaa tctccgccac gtgacggtag gagtcacctt gttcatgcca tcggcccgaa      6120
     ttttgtttta ccctctgcaa cgaaattcta atgggatcga gccgaaactg catcgaatcc      6180
     gccttcatgg tgctattact cctggaaata cataaaaaaa ccaacaacct aaatcgttag      6240
     ctcatactca cccaaaatgc cacgattcac atcctgtcca ctgtctatca ttccgaaaaa      6300
     tatcaaatct gcgtagtcat tgtcttcact gtcgtttatt aaccggagaa aaatgacaga      6360
     acgaggaact agcacgcagc gaggtatgct catttgggct gcagtcagta cgcagccatg      6420
     gttaccaaaa gtgttacacg gtaaatgcat actaggccac tctgcgttat ttcaaagtat      6480
     ttcctcgtat agcgaggaag taaataagaa aggcgtatgt tgagtggtaa tgaaaatatg      6540
     attatcatga aaacaaattc gatcatttta ggaaataaaa tgtaccgatg atatgttttc      6600
     tagtgaatag attaggggcc ccgatcaaca atagttaagt taatgataag ttaggaatgt      6660
     ttgtgaaaat atcaatggaa atgagtgaat agtacgactg atgaaatgaa cataaatgga      6720
     catgagtgaa tggacacttt gtatgtgtga gcaagcgtgt atggatgttt gattgatcaa      6780
     agcatgaatg atacaaatat gaatattttg cccaagaaga tgtcttgtgg tagtaaacag      6840
     taaaaatgag gatgaacgaa aattgaatat gatctcctcg gattaagtgc gattttggta      6900
     aggtgaattc cgcatgcctg caatatttcc taatctgtaa atctattctt cggttgagtt      6960
     tacgactgag agggtgttta ttctgacgca aaagtttgga agtggacaga ctcacttcat      7020
     tattgtcgta cgattctgtg taaaagagtt cctctgccaa gtatgaaaaa tcattgcatc      7080
     gaatggaacg gataatgatg aagcagcagc cgcacattgc aaacgaatgg acaggctcac      7140
     tccatcagtg ccatacaatt catgggaaag agctcctctg cttgcaatga aaaatcattt      7200
     catgaattgt gactggtact gatggagcag tagtcgcatt caaaacagtg ttatctggca      7260
     aaatttatat ttttttttat attatctggg ataatggtgg atgctttcct tttctctccc      7320
     cggcgacggg aagat                                                       7335
//
ID   Gypsy-170_AA-LTR repbase;    DNA;    INV; 1281 BP.
XX
AC   supercont1.294;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-170_AA_;
KW   Gypsy-170_AA-I; Gypsy-170_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1281
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.294; Positions  667846  666566.
XX
SQ   Sequence 1281 BP; 353 A; 256 C; 296 G; 376 T; 0 other;
     tgtaaccagt cactttgtag gttacaatat gaaacttgaa tgctggacca atttggttca        60
     aaattatgaa ataatgtaaa ttcaatattg taagtaaatg tctaaatata aaataaatgt       120
     ttgtgctccg tgaaatcatg tttgagtgaa tatttatttt atgtttaaaa gcccttggtt       180
     gacatagaac gatagttttc ataaacaatt agggaattag ttcttttgat atattgtgtc       240
     ttaaagtttt cgtcaagttt tgaatttaaa tgttcgtctt gtcagccatt tgtatataat       300
     gttcgaattc gaaaatgtat gtgttatacg ggttgcccgc ctaggagatc tatagcccga       360
     catcgaaaat ttggaatggc ggtttggatg cgatgagagg gcaagaattt gatggcgaaa       420
     tcggatataa aaggacatag cgaacttcag ggggtctctt gtattgttag aagtttgatc       480
     cggaggagtg aagaacagtg acagtgccgg ttacgcccgt ctctatgcgt atcggtagtt       540
     ccgcgtcggt tctagtgtgt aaccgacaaa tcgaagtccc taaggtgaaa cagttaaatc       600
     gtctcccata acaccggact taaagttaaa aggtacggaa ctcggtatga ccgcaccaca       660
     acggttagcc aaaagacacc ccagtagaag ttagtgctag tcgagttagg tcatccgggt       720
     tcaatacgtg ccaaattaag gaccaagcga gtgtggtgca aaagactgca gtgtgagtgt       780
     ttgaaacggt cagaagtggc atggtgaggt ccttaccgat gtttggaagg cctcgagacg       840
     atacgctaaa actgtgacct gccagagata gtgtcgtgac tcgcttggtt tcctgaccga       900
     ataacagtgc gcgctcggta ccactccccg gatccgcgga acgtacgttg gccgtccgtt       960
     acaataggcc tagtgtcacg tgtcgggaat agccccggtt catgggttat atcctgagac      1020
     ctaccaaagt tacctaccct gctcggattc cctcgccgcc attgtccacc accgagaagc      1080
     cccgcattcc atcatctgcc tgctgtatgt cgaccaccgt tcatcatggc cacaacgaaa      1140
     gctaagtgtt accttttgtt caaatttcgt cctaataaac tgtccagaag cttgttctca      1200
     ataaattcct tagtctattt gttaaatatt gtattgtgta aattttgagt agtttgttga      1260
     accgaattgt ctagtcctcc a                                                1281
//
ID   Gypsy-171_AA-I repbase;    DNA;    INV; 5847 BP.
XX
AC   supercont1.268;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-171_AA_;
KW   Gypsy-171_AA-LTR; Gypsy-171_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5847
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.268; Positions 1206427 1212273.
XX
CC   Positions [4617-5093] - Integrase core
CC   'GGTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1063..2271
FT                 /product="Gypsy-171_AA-I_1p"
FT                 /translation="MSEAGQYVRVHQCDDEHSSNDHAEEHSKESEVPEQHN
FT                 HEDEQLDTQQTEKPGTTMDERVLRLENAVVRLSNVVIEKHFPEVAKTAAKS
FT                 WTDTQKETSVTQEARQCANVRWDHVQAFPKNVPASKLWETWRHYMESFEIA
FT                 ASFSNATDPALKAKLLYLVMGEEIQTMVRAANLRPSLDDPECYRKLVSNIE
FT                 EYFRSLVDPAAEHDEFFGMHQQQGESVVRFHARLMEKAQACEFHTDNQNQF
FT                 VHSQLLKGMRNQDIATSARTYSHDTACVVQAAARQETYGSEFQRGPPSCTD
FT                 TSTVQAVEQNLHKRKNYIEPRSMDHQSRFFKKRKFDSKPKKSTTCSSCGRS
FT                 EHSDPRKCPAKTRSCKSCGKRGHFEAVCRSKRINNTDGEISEDHRISMKTR
FT                 EPSVENDKV"
FT   CDS           4533..5537
FT                 /product="Gypsy-171_AA-I_3p"
FT                 /translation="MPGDAENWVKACRVCAINGKPEKPTPMERIFAPKAVW
FT                 ETIAIDFNGPYARYGGMYILVLVDYRSRYLIARPTKSTGFEQTKSVLEEVF
FT                 DRQGFPSVIKSDNGPPFNGDDYKKYCAERGIKTIFSTPLFPQQNGLVENYM
FT                 KIINKAMSASVTCGTNYNDELQAAVRAHNAAAHSVTKVPPEEIMLGRKIKR
FT                 GLPLLDREKVHHDEDLLNQRDREAKLDAKHREDKRRSARLCRVKPGDVVIV
FT                 EKQTRSKGEARFGDKRFTVLEEKNGNLLLADDEGSTLRRHVSQTKVVGEWM
FT                 DAPPKASENHVTIPAAAPIRPIRERSAPSYLKDFVQIISAEVR"
FT   CDS           2669..4264
FT                 /product="Gypsy-171_AA-I_2p"
FT                 /translation="MEIEQSFKAKISTVDIFKPSTWAEFLVVPDGRRSLLG
FT                 RKTAGEMKLLIVGAAVNACVDSGKVETFPKMPGVRVKFSVDKSVPPVRNAY
FT                 YNIPAAYREAARNRLNDMEMKGIIEKVSTAPEWISGMSAVAKGKGDFRLVV
FT                 NMRAANRAIKREYFRLPLLEEMKVKLHGAKFFSKLDLSNAYYHLELDKDSR
FT                 DLTTFLSENGMFRFTRLMFGVNCAPEIFQREMTKILKQFPNVIVYIDDILV
FT                 FAKSLKELRETVAAVMKVLRANNLTLNAQKCELDKTSIKFLGHNLDEHGFH
FT                 IDEAKVRHIQQFRQPQSVSELRSFLGLASFVSPHIQHFADLTSPLWAVSGK
FT                 NSWKWGPSQKQAFENVKHKISKCATTLGYFCETDRTVLYTDASPTALGAVL
FT                 VQVSGTNTPRIISFASKALTETEKRYPQNQREALGAVWAVEHFAYYLLGRH
FT                 FTLRVDAQGIAFLLNRTREDSKRALTRADGWALRLSPYDYNIECIRGRDNI
FT                 ADTLSRLYEGIDGPFNDDVSPWEIAKLEVKKCYLFN"
XX
SQ   Sequence 5847 BP; 1749 A; 1199 C; 1350 G; 1549 T; 0 other;
     atggcgattt cctgccagaa ttttctttct caacaaagaa aggaaatgat cagtttcttg        60
     gagtagttta tttctttatt caattcactg tagaagaatc gccccattga accaaaaact       120
     tgtttagttt ttacaaaatc ggcaatttcc tttaccgacg cgagtgtacg acgaaaaatg       180
     cgtgaatcaa aatggcgtgt gaaaaaaagt gaaagtgaag atttttttta ttccctcctg       240
     ctgatgtgca tgttggtttg ttgctaaatt gtttgaacca cttttttccg caaatggcgc       300
     actgacgaaa gcacaaatcc gtttcgatgt cgttggtttg ccttcatctt tagtgcaaat       360
     gtcacatgtc ggatagtgta tcacagtgca gaatgttttg cggtgaaatg gttcatgcca       420
     tttagagcaa atgtcgtgct gacgattacc cattgcgaag atgttttgcc gtcgtgtggt       480
     tcttggaaac cactccgcaa ttgtcgcata aaaagggagg cgtatcacag tgctcgttga       540
     tttgcagttg catggtctgt aacattcatc gcaagtggcg cattgacgaa attacaagac       600
     ctttctgatg ttgttttgtc gtcgtgtagc tttcaacagc tgcagcacaa atgtcatatc       660
     aagaggaaat tgtatcacag tgctgagtgt tttgcgtttg attgttgcat gccttacagc       720
     gcaaatgtca cactgatgga tttgcattgg ctcttatttc catcgcaacg ttgttttacc       780
     gtcgtgtggc tctcgggagt cgtaacgtaa atgtcgcgtt gggaagagta tgatggtagt       840
     ttgcctatca aattgcgaaa aacattcaat ccaaaacatg ttctagtatt ttttgctatc       900
     ggttaacatc ttttcacaat aaattaaatc tattaaagta tacaagcact cgaatcggat       960
     ctatgtttca aagatttgtt taagcctttt taataaaagc aatttgacga tgctagagat      1020
     tgacatgtgt ttttgcatat tttggtaggt tcaacagtca aaatgtcgga agcaggacag      1080
     tacgttcgtg tccaccagtg tgacgacgaa cattcttcaa atgaccacgc tgaagaacat      1140
     tccaaagaat cagaagttcc agaacagcat aaccacgaag atgaacaact cgatactcaa      1200
     caaacggaga aacctggcac caccatggat gaaagagtgc ttcgcttgga aaatgccgta      1260
     gtgcgccttt ccaacgtcgt gattgagaag cattttccgg aggtggcaaa aaccgccgct      1320
     aaatcttgga ccgatacaca aaaggagacc agtgtgacgc aggaggcacg ccagtgtgct      1380
     aacgttcgct gggatcacgt tcaggcgttc ccaaaaaacg ttccagcatc gaagctttgg      1440
     gaaacttggc ggcactacat ggaaagcttc gaaatcgccg cttcattcag caacgctaca      1500
     gatcctgcgt tgaaggcaaa gctactgtat ctggtcatgg gtgaggaaat tcaaacgatg      1560
     gtaagggccg caaatctgcg accgagtctg gacgatccgg aatgctaccg caaactggtt      1620
     tcaaacatcg aagaatactt cagatcccta gtcgatccag cagcagaaca tgatgaattc      1680
     ttcggcatgc atcaacagca gggcgagtca gttgttcgtt tccacgctcg tttgatggaa      1740
     aaggcgcaag cctgcgagtt tcataccgat aaccaaaacc agttcgtcca ctctcaactc      1800
     ttgaagggca tgaggaatca agacatcgct acctctgcac ggacttacag tcatgacacg      1860
     gcatgtgtcg ttcaagctgc cgcaagacaa gaaacctacg gatcagagtt tcaaagagga      1920
     ccacccagct gtacggacac ctcgacggta caagccgtcg aacagaatct tcacaagcgg      1980
     aagaactata tcgagccaag atccatggat catcaatcca gattcttcaa gaaacgtaag      2040
     ttcgatagca agcctaagaa atcgacgact tgttcttcgt gtggccgttc ggaacacagt      2100
     gacccaagga agtgcccagc caaaacgcgc tcctgtaaat cgtgcggcaa gcggggacac      2160
     ttcgaagcag tatgccgaag caagcgcatc aacaacacag atggtgagat ttccgaggat      2220
     catcgcatct ccatgaaaac gcgtgagccg agcgtcgaaa atgacaaggt atgagttgaa      2280
     aatatttgtt atactttttc ttttgaatat tccaataagc acatcggcga ggaacgcctt      2340
     ttttttaatt ttacattaaa aacgtggttt taagttttta tacttgtttt gtttaattta      2400
     tgcggaaact aagtgtcctg tccatttttg tgtcttattt tatctgcagt ccgctaacct      2460
     catctcttat gaagacgtcc tagtgagctg tagtgtagga tcttcaacac ctatcaaatt      2520
     cttgattgat tcaggatcag atgttaatgt gatcggagga tgcgattggg aacttttaaa      2580
     acaagaattt gaaaatggtc tacttcaaat tgatttcgtc gcgaaacaca accatttatc      2640
     ggttcgtgct tatgctgccg ataagccaat ggaaattgag caatctttca aagcaaaaat      2700
     ttcaaccgtt gatattttta agccgtcaac atgggcagaa tttttggttg tccctgacgg      2760
     gcgtcgatct ctgctcggga gaaaaaccgc aggtgaaatg aagcttttga tcgttggagc      2820
     ggccgttaac gcttgtgtag actcaggaaa agttgaaacg tttccaaaaa tgcccggcgt      2880
     aagagtcaaa tttagcgtcg ataagtccgt tcctcctgta aggaatgctt attataacat      2940
     cccagccgca taccgcgaag cagcgcgaaa cagattgaac gatatggaaa tgaaaggtat      3000
     aattgagaaa gtttcaactg cccccgagtg gattagcggc atgtcggcgg tcgctaaggg      3060
     aaaaggagat tttagactcg tcgtcaatat gagggcagca aacagagcaa ttaaaaggga      3120
     gtactttcga ctgccccttt tagaggaaat gaaggtcaag ctccatggag cgaaattctt      3180
     ttccaaactt gacctctcta atgcttatta tcatctagag cttgacaaag actccagaga      3240
     tttaacaaca ttcctatcgg aaaacggaat gttccgtttt acaagattga tgttcggggt      3300
     caattgtgcc ccggaaatct ttcagagaga aatgaccaag atcttaaagc aatttccgaa      3360
     cgttatcgtg tacatcgatg atatattggt gtttgcaaag tccttgaaag agctgagaga      3420
     aaccgtggct gcagtcatga aagttttgag ggcaaataat ctcaccctga acgcgcaaaa      3480
     atgtgagctg gacaagacat ccattaaatt tctggggcat aatttggacg agcatgggtt      3540
     tcacatagat gaagcgaaag taagacatat tcaacagttc cgacagccac aaagcgtctc      3600
     cgagctaaga agctttctcg gcttggcttc attcgtaagt ccgcatatcc aacacttcgc      3660
     tgacctaaca agccctttat gggccgtttc ggggaaaaat agctggaaat ggggaccttc      3720
     ccagaaacaa gcatttgaga acgtaaagca caagatttca aaatgtgcta ctactcttgg      3780
     atacttttgt gaaactgatc gaacagttct ttacacagac gcgtctccta cggcattggg      3840
     cgccgtctta gttcaagtta gtggaactaa taccccccgc atcataagtt ttgcgtccaa      3900
     ggctcttact gaaacagaga aaagatatcc acagaatcag cgtgaggctc tcggagctgt      3960
     atgggccgta gaacattttg cctattactt attaggacgg catttcaccc ttcgagtgga      4020
     cgcccaaggc atagcttttt tgttgaacag gacaagggaa gattcaaagc gtgcgctaac      4080
     cagagctgac gggtgggccc tgaggttaag tccgtacgat tataacatag aatgtatccg      4140
     cggacgggac aatattgcgg atactctttc tcgtttatac gaaggaatcg acggcccgtt      4200
     caatgatgat gtcagccctt gggaaattgc aaagctggag gtaaaaaaat gctacctttt      4260
     taactgatga cgaagtgaga gaggcaacat cgcttgacga ggttctatgc aaggtagttc      4320
     aagctttagg atctggcgaa tggcccgtgc agttgaaacg atttaagcaa gtggcggaag      4380
     atttgtatgt taaggatggc cttgtgatta agaatggttg cgtagtaatc ccagacaaat      4440
     tacgacataa aacgttggag attgctcatg aaggtcatcc tctagccgca aagctcaaaa      4500
     gcatccttag ggagcgcgta tggtggcctg gtatgccggg agacgcagaa aactgggtga      4560
     aggcttgtcg ggtttgtgca attaacggaa aaccagaaaa acccaccccg atggaacgca      4620
     tttttgcccc taaagcggta tgggaaacca tagctattga tttcaatggc ccctatgcta      4680
     gatatggagg gatgtatatc ctggtgcttg tggattacag gtctagatat ttgatcgctc      4740
     ggcctacaaa gtcaactggt tttgaacaaa ccaaatccgt attggaggag gtattcgata      4800
     gacaaggttt tcctagtgtc atcaaaagcg ataatggccc cccattcaat ggggatgatt      4860
     acaaaaagta ttgtgcagag agaggcataa aaaccatctt ttctacgccg ttgtttccgc      4920
     aacaaaacgg actggtagaa aactatatga aaattatcaa caaggctatg tcagcatccg      4980
     ttacctgtgg aacaaactac aatgatgaac tacaagccgc agttcgagca cataatgccg      5040
     ccgctcactc agttaccaaa gttcctccgg aagagataat gctcggccgc aagattaaaa      5100
     gaggactccc tctgctggat cgtgaaaaag tgcaccatga cgaagattta ctgaatcaaa      5160
     gagatcgcga agctaagctg gatgcaaaac atcgcgagga taagcgtaga tcggctcgtc      5220
     tctgtcgagt caaaccggga gacgttgtca ttgttgaaaa acaaactcga tcgaaaggag      5280
     aagctagatt tggagataaa cggttcacag tattggagga gaaaaatgga aacttgttgc      5340
     tggctgatga tgaagggagt accttaaggc gacatgtttc acagacaaag gtggttggtg      5400
     aatggatgga tgcacctcca aaagcatctg aaaatcatgt aacgatccct gcagcagcac      5460
     caatccgacc aatcagagaa agaagcgctc cgtcgtacct gaaagatttc gtgcaaatca      5520
     tctcagccga ggtaagataa taaagccgta tatatataaa tgtgtgtgtg ttgttgtcac      5580
     atgaatatta acctgctgtt tgcaatgtca aatggctaaa aaaatatacg attttctttt      5640
     atattttaca gaggaaccaa ctgtagtcat cttcaaataa ccagtcattc aatttgtatt      5700
     atcattatgt aggttagaag attgctatgt agtagtaacc ccgattaaat tgtccacttg      5760
     aaaacaattt ttcttatatt gaaacatgcc gaaaaaacaa atttcttcaa ttcgtaacaa      5820
     actttgatct acggaggaaa gggaaga                                          5847
//
ID   Gypsy-171_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   supercont1.268;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-171_AA_;
KW   Gypsy-171_AA-I; Gypsy-171_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.268; Positions 1206201 1206426.
XX
SQ   Sequence 226 BP; 58 A; 57 C; 58 G; 53 T; 0 other;
     tgtgggagat gggaaatcta gtcccatgaa tttagtgact ccaagcatac acacgttacg        60
     gtaacgctat gcgaacacta gcaagtgata ttggcaacac ggtcactgct cgccgagaat       120
     cgacggcatc gcagcagtcg tttgctcggc ctctttctca accggaacgt cgaccgagta       180
     agtcgcattg gggcgattct tccgcagtgg aataacgatt ttcaca                      226
//
ID   Gypsy-172_AA-I repbase;    DNA;    INV; 5154 BP.
XX
AC   supercont1.188;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-172_AA_;
KW   Gypsy-172_AA-LTR; Gypsy-172_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5154
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.188; Positions 1621300 1616147.
XX
CC   'ACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           820..3999
FT                 /product="Gypsy-172_AA-I_1p"
FT                 /translation="MLQIEEDVGQLIRLANNLKKSINTKYRIETLKAKLKY
FT                 ANELYADVEQRLIQHEEEIPLTSLNFLIKSSRDANRIITSIINDKIAQNSK
FT                 KELINKENLTLTNGTQTASNMALPNGNQPVPNMAQFDIKTASSLLKQYDGS
FT                 PENFHAFEDAVNMLVDLIEADYHPILLRFIKTRLTGKARNGLPEHCATIPD
FT                 LVANVKTRCEEKINAESVIAKLKSVKVKENMETFCSEIETLTNKLQSIYVG
FT                 QQIPEQVASKMATKVGVDALISNINNQETKIILKVGTFGNIKDAIQKVQEN
FT                 VLPNSHIFQLKRTNNTNQDYRNNNSRGQGNRSNQRNNTGRQIHSSFQTLTC
FT                 FNKGHTVEMLIEDNLRGDIVLPPRCEVFRQIYVTLDKGDYLFPSSEILPGI
FT                 FNANTIINSTNSVVKFINTTNEVIKLNKNFSNHCVPLNNYNIFTFTKNQSK
FT                 DRAQQLLEELNLSHVETDVKSKLMKLCNKYSNLFALKTDTLTCNNFYTQQI
FT                 HLNDPTPVYIKNYRTPEAHLAEINSQVNKMLNDGIIQPSISPYNSPILLVP
FT                 KKSQSGDKKWRLVVDFRQLNKKIIADKFPLPRIDEILDHLGRAKYFSTLDL
FT                 ASGFHQIELDENSKKLTAFSTSSGHYEFNRLPFGLNISPNSFQRMMTIALS
FT                 GLPPECAFLYIDDIIVIGCSINHHLMNLEKVFEKLSKYNLKLNPSKCIFFC
FT                 ADVTYLGHHISNVGIQPDKSKYNVISNFPIPKNADDVRRFVAFCNYYRRFI
FT                 PYFSELASPLNALLKKNVKFEWTDACQYAFENMKMKLLSPQILKFPDFSKK
FT                 FILSTDASKIACGAVLTQDYDNIEMPIAYASKAFSKCEKNKSTIEQELIAI
FT                 HWAITHFKPYLYGRRFTVKTDHRPLVYLFSMKDPSSKLTHMRLDLEEFCFD
FT                 IEYVKGKNNVGADALSRIIINSDELQSLSILPVQTRSVTKKLNNQRNETTI
FT                 SDSSNTEIDHLRVYESVNNLDAFDIPKTIFDIRNNKMNLQIFTKNLKRVIA
FT                 HATLFYKNGSINIAECLQTINEMAKKTKIQELAMKRDDTIFTMIPTSSGIQ
FT                 TSV"
FT   CDS           4067..5092
FT                 /product="Gypsy-172_AA-I_2p"
FT                 /translation="MIQKLISENHDTPTGGHVGINRLLNKLRSKYYWPNMK
FT                 NTITKYIKNCFKCIQNKHTIKTNEIFSKTTTPSKCFDTISIDTIGPFTRST
FT                 KGNRYALTIQCDLSKFVIIAPIPDKQAKTLAKALVENCLLIFGCPVIIKSD
FT                 LGTEYKNEIFNNICNLLEIQQKFSTSYHPQTIGSLERNHRCLNEYLRHFIN
FT                 EQHDDWDSWLMYYTFSYNTTPHSEHLFTPFELIFGKQANLPSQFMNNVDIE
FT                 PVYNYESYLSELKFKLQTVCAKAKILLDKSKTSRNQIQSQSANPLEKTIGD
FT                 TVWLKVENRRKLDPVYSGPFKIINIEHPNVIIENIISRDKQKVHKNRIIK"
XX
SQ   Sequence 5154 BP; 1995 A; 908 C; 856 G; 1395 T; 0 other;
     tggcgaccga cagtaaaaac aatgaaagta ccaaataacg taataattgt gttaatagtt        60
     tcgctgatag gattttgcct gatagtatat atttattatc aactactggt tgaacttaag       120
     gcaatcacaa gaagtgcttc attaatcaac cagctaagtg attaaaagtg aataagtgaa       180
     tacctacagc aagaaaatgg gatctggaca atccaagcca gaggagatag tgattcaaca       240
     acagcagcag cagcagcagc agcaacagcc attaacagac tcaggaatcg gacctatgca       300
     tgttattgca acctgcatga tagtgctgtt aatagcaata tttttaaaag tggtgtggcg       360
     cataattatg cgtgaagttg aaacacgtcc acgcagggcg cctagtcttg ccaatattgt       420
     ctaaaaactg ttaagcgagt ttaaatgaat gtggtgacta cccaacagtg ggtgaaatag       480
     acaaaataaa ctggacagaa gaacaaaagt gcgcgaaaca gggtgaaggt aaaaatcccc       540
     gtcggaagaa ttcgagatgc agtaaaagtg aaaccccaaa gtcgggaaaa atcgtcaaaa       600
     gtgctggtgg tgatcgtcgc gagaagcaga tgagccagaa aaaggaaaaa tcgacaacat       660
     caagcgtgcg ttgaggagtg cgcctccgca gctaggaatt acaacaagcg tgcgttgagg       720
     agtgcgcctc cgccgcaagg gaccacaatg gaattgaaaa caagataagt acagttaaaa       780
     agttaattag ataagtaaag ttaagctagt gagtttttaa tgttacaaat tgaagaggac       840
     gttggccagt tgatcagact agccaacaac ctaaaaaaat ctataaatac aaaatataga       900
     attgaaaccc taaaagctaa actaaaatac gcgaatgaac tctatgccga tgtggaacaa       960
     aggcttatac agcatgaaga ggaaattcct ttaacaagtc taaatttttt gattaaatcc      1020
     tcaagagatg ctaatcgaat aataacttcc attataaatg ataaaattgc acaaaatagc      1080
     aaaaaggaat taataaacaa agaaaaccta acattgacaa acggaactca aactgcctca      1140
     aacatggctc tcccaaacgg aaatcaacct gtcccaaata tggcacaatt tgacataaaa      1200
     acggcgtcca gtctacttaa acagtatgac ggatcgccgg aaaattttca cgcttttgaa      1260
     gacgcagtaa atatgttggt agatctaatt gaagcagact accatccaat tctgctaaga      1320
     ttcatcaaaa cgaggttgac gggaaaagcc agaaatggtt tacccgaaca ttgcgcaacc      1380
     attccagacc tagttgccaa tgtcaaaacc cggtgtgaag aaaaaattaa cgctgaaagc      1440
     gttatcgcga aattaaaatc agttaaggtt aaggagaata tggaaacatt ttgctcagaa      1500
     attgaaactt taacaaataa actacaatcg atttatgtgg gacaacaaat cccagaacaa      1560
     gtggcttcta aaatggccac aaaagttggt gtagacgctt taatttctaa catcaataac      1620
     caagaaacga aaattattct caaggttggc accttcggaa acatcaagga tgccatccaa      1680
     aaggtacaag aaaacgttct gccaaactcg catatttttc aattaaaacg caccaataat      1740
     acaaatcaag attacagaaa caacaattcc agaggacaag gcaaccggag caatcaaaga      1800
     aataataccg gtagacagat tcacagttct ttccagacac ttacgtgttt taacaaagga      1860
     cacacagtgg aaatgttaat agaagataat ctcagaggtg atatagtttt acctccgaga      1920
     tgcgaagttt tcagacaaat atatgttaca ttagacaaag gtgattatct ttttccttct      1980
     agtgaaatac tcccaggaat atttaacgca aataccatta taaattcgac aaattcagtt      2040
     gtgaaattta ttaacacaac taatgaagta attaaactga ataaaaattt ttctaatcat      2100
     tgcgtacctt tgaacaatta taatattttt acctttacaa aaaatcagtc aaaagataga      2160
     gcacaacaac ttttggaaga attaaactta tcacacgttg aaaccgacgt taaaagtaaa      2220
     ttgatgaaat tatgcaataa atacagtaat ctattcgcat tgaaaacgga cacattaaca      2280
     tgtaataatt tctacactca acaaattcac ctcaatgacc caactccagt atatatcaaa      2340
     aattaccgaa ctccagaggc acacttagcc gaaattaact cccaggtgaa taagatgtta      2400
     aatgatggca taatacaacc ttcaatatcg ccatataact ctccgatcct tttagttccg      2460
     aaaaagtcgc aatcaggaga taaaaaatgg cgtttagttg tcgattttag acaactaaat      2520
     aagaaaatta tcgctgataa atttcctctt ccaagaatcg atgaaatttt agatcatctt      2580
     ggaagagcta aatatttttc aacccttgac ttagcctcag gttttcatca aattgaactt      2640
     gatgaaaatt cgaaaaagtt aacggccttc tccacatcat caggtcatta tgaatttaac      2700
     aggttaccgt ttggtttgaa catatcacca aacagtttcc agaggatgat gactattgct      2760
     ttaagcggtc tccctccaga atgtgcattt ttgtacattg atgatataat agtaattggt      2820
     tgttctatta atcatcattt gatgaattta gaaaaagtct ttgaaaaatt atcaaaatac      2880
     aatttaaaat tgaacccgtc gaaatgtatt tttttctgcg cagatgttac ttatttagga      2940
     catcatatca gcaatgtggg tatccaacca gacaaatcga agtacaatgt catttcgaat      3000
     tttccaattc ctaaaaatgc ggacgatgta agacgattcg tcgcattttg taattattac      3060
     cgacgtttta taccgtattt ttcagaatta gctagcccac ttaacgcatt actaaagaaa      3120
     aatgttaaat ttgagtggac tgatgcctgt cagtacgctt ttgaaaatat gaaaatgaag      3180
     cttttatcac cacaaatatt gaaatttcct gatttctcta aaaaattcat tctaagtact      3240
     gatgcttcca aaatagcatg cggagcagta ctaactcaag attatgacaa catagaaatg      3300
     ccaatagcat acgctagcaa agcattttcc aaatgcgaaa aaaacaagtc aactattgag      3360
     caagaattaa ttgccataca ttgggcaatt actcacttta aaccatacct atacggcaga      3420
     cggtttacag tgaaaactga ccaccgtccg ttggtatatt tattttctat gaaggatcca      3480
     tcgtctaaac tgacacatat gcgattggac ttagaagaat tctgttttga catagaatac      3540
     gttaagggta aaaacaacgt tggtgccgat gctctctctc gtattattat caattcagat      3600
     gaactacaaa gcttatcgat attaccagtt caaacaagat ctgttacaaa gaagctaaat      3660
     aatcaacgaa atgaaacaac tatttctgat tcatctaaca ccgagattga tcacctcaga      3720
     gtttatgagt cagttaataa cctggatgcg ttcgacatcc cgaaaactat ttttgacata      3780
     agaaataata aaatgaattt acaaatattt accaagaact tgaaaagagt aattgcacat      3840
     gcaacattat tctataaaaa tggttcaatt aatatagcag aatgcctaca aacaataaac      3900
     gaaatggcaa agaaaacaaa gatacaagag ctggcaatga aacgagatga tacaatattc      3960
     acgatgatac ctacctctag cggtattcaa acaagcgtgt aatgaaacat taaaagatat      4020
     aaaaattgtt atatatgtac cggtacaaat agttcaagaa aatgaaatga tacaaaaatt      4080
     gatatctgaa aaccacgaca ctcctacggg aggtcatgtt ggtataaata gattacttaa      4140
     taaactaagg tcaaaatatt attggcccaa tatgaaaaat actataacta aatatattaa      4200
     aaattgtttt aagtgtattc aaaataagca taccattaaa acaaatgaaa ttttttcaaa      4260
     aactacaaca ccatcaaagt gttttgatac tatttcaata gatacaatag gaccttttac      4320
     taggtcaaca aaaggaaata gatacgcatt gactattcaa tgtgatctat caaaattcgt      4380
     cataatagct cctataccgg acaaacaagc taaaacacta gcgaaagcgc tggtagagaa      4440
     ctgtttactc atatttggtt gtcctgtaat aataaaatct gatttaggaa cagaatacaa      4500
     aaacgagatc ttcaataaca tatgcaattt attggagata cagcaaaaat tttcaacttc      4560
     atatcatcca caaaccatag gaagcctcga acgaaatcat cgttgtctta atgagtatct      4620
     tagacacttt attaacgaac aacatgatga ttgggattct tggctaatgt actatacttt      4680
     tagttacaac acaactccac actccgagca tttatttaca ccgtttgagc ttatctttgg      4740
     gaagcaggca aatttaccaa gtcaatttat gaataatgta gatattgaac cagtatacaa      4800
     ctatgaatca tatctttccg aattgaaatt caaattacaa actgtttgtg caaaagcaaa      4860
     aattttatta gataaatcaa aaacttctag aaaccaaatt caatcacaat cagcaaatcc      4920
     attggaaaaa acaataggtg acacagtatg gctaaaagta gaaaatagaa gaaaactcga      4980
     tcctgtatat tcaggaccat ttaaaattat aaacatagag catccaaatg tcataataga      5040
     aaacattata tcgagagata aacagaaagt tcacaaaaat agaataatca aataaattca      5100
     aattgtaaac gaataatctt actttgtaat atcattcttt tctgaggggg aagg            5154
//
ID   Gypsy-172_AA-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   supercont1.188;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-172_AA_;
KW   Gypsy-172_AA-I; Gypsy-172_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-444
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.188; Positions 1616146 1615703.
XX
SQ   Sequence 444 BP; 147 A; 97 C; 78 G; 122 T; 0 other;
     tgtaagcaaa gctctttaga caaacattga attactcatt taatattcat tctactctca        60
     aattacaatt gctacatatg ctaaccatgc actcttcaag tgccggtcaa taaatcaatg       120
     caccctgctg agtacattgt actcagcaga cccgaataga cagaaggtca agttacagac       180
     ctccactgtt gctgcgtgaa ccaaaccaaa atgcgatatg cagatgttgc atatctgtac       240
     agtaaatatg cagtacatac cgatcgtcat tgattggccc gatcgaagct aagcacctcc       300
     tccagtcaga atgactatca atgtattagt tttgtagact ttaagaaata ggttagctgt       360
     aagatgcaat acaataaacg tagaaatctg attttgaacc tgaaaccgtt cgggtgtttc       420
     aatgccaaat gtccgaacga caca                                              444
//
ID   Gypsy-173_AA-I repbase;    DNA;    INV; 3947 BP.
XX
AC   supercont1.174;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-173_AA_;
KW   Gypsy-173_AA-LTR; Gypsy-173_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3947
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.174; Positions  877193  873247.
XX
CC   'ATAGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           614..3784
FT                 /product="Gypsy-173_AA-I_1p"
FT                 /translation="MAQSALATNIEPYRKGAGFTEWAERLELLFLINEVKE
FT                 EHKRAYLATLGGPVVYAELKLLYPNTDLNAVAYNDMISKLKARFDKVAPDI
FT                 IQRLNFNNRIQQKDESVEDFVLAVKLQAEFCTFGDYKSVAIRDRVIAGIRD
FT                 KALQQRLLNEENLTLATAEKIIATWEVAGANSKGLADNSGIEKIATIASTN
FT                 KPDSKPRSTLEKLLATIELARAENPDLGEGHSRGPVRSRLGFRPNIQRRHP
FT                 TYNAQMGPYNPRQRGDWRGTRDRQRGQYVYNRLPQGASSSASIFQQVMDQV
FT                 LHGIDFVYCYLDDVLIAGSNVKECKERLLLVLKRLSEANIKVNLDKCRFFV
FT                 KELDYLGHIISDKGLLPCPEKTLTIQKAKTPKNEMELKSFLGLINYYNKFI
FT                 PRLSVKLYHLYNLLKNKVKFVWDEHCDKAFEESKNLLLNAQFLEFYDPKKP
FT                 IVVVSDASSYGLGGVISHIIDGAEKPISFTSFSLNSAQRKYPILHLEALAL
FT                 VSTIKKFHKYLYGQKFQVFTDHKPLVGIFGKEGKNPIYVTRLQRFILELSI
FT                 YEFEIQYRPSTRMGNADFCSRFPLEQMVPDDLDAECVKSLNFGKELPIDYK
FT                 VIADWSKEDGFLQQVVSHLQNGWPKKLEKCFADIFANHQDLEIIGDCVLYQ
FT                 NRVVIPKGMQSKVLKLLHANHAGIVKMKQLARRNVYWFGINNDIEKFVSSC
FT                 DICGSMAIVPKPKVLSKWIPTARPFSRIHIDFFYFEHHVFLLIVDSFSKWL
FT                 EIEWMRNGTDASKVINKLIVYFARFGLPDMLVSDGGPPFNSGAFISFLERQ
FT                 GIDVLKSPPYHPSSNGQAERFVRTVKEVMKKFLMERSVMELELENQINLFL
FT                 ITYRNNCLTKDGDCPSERIFSYNPKTLIDLVHPKKHPKQLLKDQLPHDDTN
FT                 IPREDGDVHMRSNDPLNDLIAGEELWYKNHNPHVKARWVKANFIKWHSRNI
FT                 LQVQTGSVPIMAHRNQVRKCNTDNRSKPNTVVLLRRDDEGGVEMNQFPDDR
FT                 EVATASVPQESGDNRRRRKRKYEDPMDEQSLILRRSSRSKKPKKDDIFVYN
FT                 "
XX
SQ   Sequence 3947 BP; 1288 A; 676 C; 869 G; 1114 T; 0 other;
     agtggcgacg agttcggcga aaatcgaacc agagaaagtg gtaagcctag cagtcgtgga        60
     acggcgcaga cgttggaacg ttcgattaag ctgaagaaaa gtaagagtga tcacggcaag       120
     atttacagtc agccattgtg ctatttcagc attgtcaact gtgattgcct attgtgatct       180
     tttgtgaaac atcctgcaac gcacattggt ggcacaaatc tcaaacaaga taaacgcagt       240
     ccaatccgat agtgaaaagg gaacaacggc tattggattt catccagatt agcagccaaa       300
     caacggttgg aaaacgtatc gatcggttga ggggagtcgt ccggcaaacc aacccgagac       360
     cagtgcattg ttgagaggta gatacgaacg ctgtgacgtc ggcaaaggtc gatacattct       420
     tttggtgagt caattttgtt acatattttt aaacacaaaa tagcgacaat tttcttttgt       480
     ttatctctat acattgtgtt tgaacaaaac tgttccctat tgacgaaaat tcacagcgct       540
     tttgtttgat ttaccttttg ataattttga attaattgtg tggtataata gcctttagta       600
     gtactgacta aatatggcgc aatctgcttt ggcaaccaac atcgagcctt acaggaaagg       660
     tgctggtttc acagaatggg cggagcgcct agaactattg tttttaatca atgaagttaa       720
     ggaggagcac aaaagggcat atttagccac cttgggtggt cccgtagtat atgctgagct       780
     aaagctatta tatccaaaca ccgatttgaa tgctgttgca tacaacgaca tgatatctaa       840
     actgaaagct agatttgaca aggtggcgcc tgatattatc cagcgtctta actttaataa       900
     tcgtattcag cagaaggacg aatcggttga agattttgtt cttgctgtta aattgcaggc       960
     agaattttgt acatttggag actataagtc tgttgccatt agggaccggg taattgctgg      1020
     tataagggat aaggcccttc agcaacggct ccttaatgag gaaaatttaa ccctggctac      1080
     agcggaaaag attatagcca cgtgggaggt agcaggggca aactccaaag gtttagccga      1140
     taatagtggt atagagaaga tagctacaat tgcatcaact aataaacctg atagtaaacc      1200
     acgtagtact ttggaaaaat tgcttgcgac gattgaattg gctagagctg agaatccgga      1260
     tttaggtgag ggtcatagta ggggaccagt caggtctaga ttaggtttta gacccaacat      1320
     tcaaaggagg catccgacct acaatgctca aatgggacca tacaacccca gacagcgagg      1380
     agattggagg ggcactcgag acagacaaag aggacaatat gtgtataatc gactaccaca      1440
     gggggcgtca tcaagcgcct caattttcca acaagttatg gatcaggtgt tgcacggaat      1500
     tgattttgtt tattgctatt tagatgacgt attaattgct ggatcgaatg ttaaggaatg      1560
     taaagaaagg ttgcttttgg tattgaaaag attatcggaa gccaacatta aggtaaattt      1620
     ggacaaatgt cgctttttcg ttaaggaact tgactattta gggcacatta tcagtgacaa      1680
     aggtttactg ccatgccccg aaaaaacatt gactatacaa aaagcaaaaa cccctaaaaa      1740
     tgaaatggaa ttgaaatctt ttcttggttt aatcaattat tataacaagt tcattcccag      1800
     attgtcagtt aaactgtacc atctctataa tttgttgaaa aataaggtta agtttgtttg      1860
     ggatgaacac tgtgataaag catttgagga aagtaaaaat ttacttctca atgcacaatt      1920
     tttagaattt tatgatccaa agaaacccat tgtggttgtt tcggacgcat ccagctatgg      1980
     cttgggagga gttatatcgc atattataga cggagctgaa aagccaataa gttttacatc      2040
     gttttctttg aactcagcgc agcgtaaata ccctatttta cacctagaag ctttagcttt      2100
     agtgagcact ataaaaaaat tccataaata tctatatgga caaaagtttc aagtttttac      2160
     ggatcataag cctctagtcg gcatatttgg caaagagggt aaaaatccta tttatgtaac      2220
     gcgtttacag agattcatac ttgagctctc catttatgaa tttgaaatcc agtatagacc      2280
     atctacccga atgggcaatg cagatttctg ttccaggttt ccgttagaac aaatggtacc      2340
     tgatgattta gacgcggaat gtgtaaaaag cttaaacttt ggaaaagaat tgcccattga      2400
     ttacaaagtg atagccgatt ggtctaagga ggatggattt ctgcaacaag ttgtttctca      2460
     tttgcaaaat ggttggccaa aaaaacttga aaagtgtttt gcggacattt ttgcaaatca      2520
     tcaagatttg gaaatcattg gcgactgtgt attgtatcag aacagagtag tgattcctaa      2580
     aggtatgcaa agtaaagtat tgaaattgct tcatgccaac catgcaggaa ttgtaaaaat      2640
     gaagcagctt gcgaggcgta atgtctactg gtttggaatt aacaatgata tagaaaagtt      2700
     tgtctcatca tgtgatattt gtggcagcat ggcaatagta cctaagccta aagtgctatc      2760
     taaatggatt ccaaccgcta gaccgttcag cagaatacat atagattttt tttactttga      2820
     acatcatgtt ttcttgttaa tcgtggatag tttctcgaaa tggcttgaga tagagtggat      2880
     gaggaacggt accgatgcaa gtaaagtcat taataagttg attgtatatt ttgcacgttt      2940
     tggattgcca gatatgctag tttctgatgg aggaccaccc tttaactctg gtgccttcat      3000
     aagtttcctt gaaagacaag gtatagatgt attaaaaagt ccgccatacc acccatccag      3060
     taacggccaa gccgagagat tcgtaagaac ggtgaaagaa gttatgaaga aatttttaat      3120
     ggaaagaagc gttatggagc tagaattgga aaaccaaata aatttatttc taataacgta      3180
     cagaaacaac tgtttgacga aggacggcga ttgcccgtcc gaacgaatat tttcgtataa      3240
     tccaaaaact ctaatcgatt tagttcatcc caaaaagcat cccaaacaac ttctaaaaga      3300
     tcaactaccg catgatgata ctaacatccc tagagaagat ggagatgtcc atatgaggtc      3360
     aaatgatcca ttgaacgatc tgatagcggg tgaagagtta tggtataaaa atcataatcc      3420
     tcacgttaaa gctagatggg ttaaagcaaa ttttattaaa tggcattctc gaaatatatt      3480
     gcaggtgcaa actggaagcg ttccaatcat ggctcatcgc aaccaggtgc gcaaatgtaa      3540
     cacagataat cgttccaagc ctaacacagt ggttctctta aggcgtgacg atgagggagg      3600
     agtcgaaatg aaccagtttc ctgacgatcg tgaagtggca acggccagtg taccgcaaga      3660
     gagtggggac aatcgaagaa ggcgtaaaag gaaatacgaa gacccaatgg acgaacaaag      3720
     tttaattctt cgaagatcgt ccaggtcaaa gaaacctaaa aaagatgata tatttgttta      3780
     taattaatca catttgtgaa ctcgaatctt gtttgtttat aaaattgaat tttaaagtga      3840
     atacattatt ctatcgaata tagatggcca ttagcggcgt agtcaaaata ttctatattt      3900
     aatcgtcggc aagagccgga gtaaggacat ctaaagggat gagaagc                    3947
//
ID   Gypsy-173_AA-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   supercont1.174;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-173_AA_;
KW   Gypsy-173_AA-I; Gypsy-173_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.174; Positions  873246  873035.
XX
SQ   Sequence 212 BP; 87 A; 45 C; 27 G; 53 T; 0 other;
     tgtagtgtac acccatttct caacattata aattagagtg taccatcaaa tgacaacttg        60
     tcagtcgaat tatacattgt aatttatata cctaccaata catacaaagc tataaaagcc       120
     tcgaaaatac aaatgaagag tcacttcgaa tcagactagc agcaagtaaa caagtgtctt       180
     aaatagttaa acccgaaacc ccaaacacag ca                                     212
//
ID   Gypsy-174_AA-I repbase;    DNA;    INV; 6935 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-174_AA_;
KW   Gypsy-174_AA-LTR; Gypsy-174_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6935
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions  157998  151064.
XX
CC   'AAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           571..2577
FT                 /product="Gypsy-174_AA-I_1p"
FT                 /translation="MDSMYSRQYRSMNVNHLLDDELEYELALRKVEFTSGE
FT                 SRDIKRRKLRNALKEERESNSFVSRRISEEARESELRLVEEKLAMIRDSFE
FT                 NRKAKKTELPQFETRLVHLYFRLLRLKKVFNTGGLEQIALGLLNSNFSRNS
FT                 RDPEVDGEYSGGLVNQPGHESAQNPESIDSEESEEEVEEESNPRTDNEKEE
FT                 SSEKSDVLDFTVRNANSRRSSTPRAKEDKVVNADELFDRIMQQVDRAITSK
FT                 LKTLNIGTRVEDKEVKKIEKLSSRPSVRETKPYKAVAKVNRQPEKEGEQRD
FT                 AGRSKKKRNRVYSESSNESRASERDSDRNSESADTETEVEEQTDNGRRLKR
FT                 RPRPVCDWKLKYDGRDDGRGLNKFVSEVEFMAEAENISKRSLFNEAIHLFS
FT                 GDARAWYIEGRRNREFRNWNELVVELKLEYQPPDMDYHYEQQAAARRQKRG
FT                 EKFQDYYYAVKDIFEQMASPPTDQRKFEIIFRNLRSDYKNSLLVKGVRTLR
FT                 MLKVWGRKLDSANWFLYRKQEGEQGSKSAQVHEITTASPAREQRPPRNNWK
FT                 ESGFKSRQSWRNPNSGGYQGPRNDPRGFRKPSPESSKSDQQTKPKQMQSNE
FT                 DPKEGSSKELLQKRVDAYRIPERTVCYNCRGNYHHSSACLKAKEVFCVACG
FT                 FQGFLKPDCPFCGKNGKRSM"
FT   CDS           4325..5698
FT                 /product="Gypsy-174_AA-I_2p"
FT                 /translation="MNSKWKPSSKLSRWSMLLQQYDMVVKHRKGSENVVPD
FT                 ALSRAVETIDLSKEDWYNRMYKKVSDTPDNFPDFKIEQDKLYKLVSSPTDA
FT                 MDYQFEWKLCLPENLRLEVIKQEHDQSLHPGYEKTIHRLKIRYYWPKMAMQ
FT                 VKKHVRSCSVCRQCKPSTLPTAPVMGNQRVSSKPFQILALDFIQNLPRSRN
FT                 GKSHLMVLMDLFSKWTLLLPIRRIESKEVCRLVEDCWFRRFGTPEVVISDN
FT                 ATTFTGKEFQELLVRRGIQHWPNSRHHSQANPVERINRTINACLRTYMEKD
FT                 QRLWDTRIAEVEELLNTTIHSSTGLSPYRIIYGHEKITMGNEHRLERDTKD
FT                 ISLAKRDEIRQKLNENIFKIVADNLKKSHEKVRKTYNLRHRKFCPTYHVGQ
FT                 KVYKRNFRQSSAAERYNAKYGPLYMPCVIVARRGSSSYEVADSSGKILGVF
FT                 SAADLRPGDDEKP"
XX
SQ   Sequence 6935 BP; 2261 A; 1230 C; 1641 G; 1803 T; 0 other;
     attggcgacc aacgttaaag tcgtgaacgg taatcggagg aacgattagt atttgaaaaa        60
     aatcttgaaa ttttttaaac gggcgacagg tgaatgcaca atcaattagt tgattgtgca       120
     atccgacatt tgatatccgc taatcatagt tcgcaagtcg acaaatggaa gcgtgaagac       180
     attggctaca ttcggttccg ttaagagtgc gaaaaagaag aagcaacaaa agcagtaaaa       240
     agttgatgga attcggagac tgggacaagt tttgaaattg gtgctggtga ctaaccttga       300
     aggacataca cttaaccaaa aacacttgaa catttcttaa aggtcctgaa tgaacttgaa       360
     tacaaaatac aaaacaacac aaaagatagc gcatttattg aattattttt gaatttcttc       420
     tcatatacta cttcttattt tctagcttaa gtttttatta tattttattt attgttgaat       480
     ttgcattgat aatctagagt taattagcat atgttgcact gaattattga atttttattg       540
     aactttacta aatcactgta tttgaacaaa atggattcca tgtattctcg ccaatatcgt       600
     tcgatgaatg taaaccacct cctggacgac gagttagaat atgagcttgc attacgcaaa       660
     gttgagttta ctagtggtga atctagggat ataaagcgaa ggaaattacg taatgcattg       720
     aaagaagaac gagagtctaa tagttttgtt tcacggagaa tatcagaaga ggcacgtgaa       780
     tcagaattac gcctggtaga agagaaatta gccatgatca gagattcgtt tgaaaataga       840
     aaggcaaaga agacagaact tccccagttc gaaacgcgtc tggttcacct gtattttcgg       900
     ttgctacgtt tgaaaaaagt gttcaacact ggtgggttgg aacaaatagc cctcggtttg       960
     ttgaacagta atttctcacg gaatagtagg gacccagagg ttgacgggga atactctgga      1020
     gggttagtca accaaccagg acacgaaagt gcccaaaatc cagagagcat agacagtgaa      1080
     gaaagtgaag aggaagtaga agaagaatcg aacccacgaa ctgataacga gaaagaggaa      1140
     agtagcgaaa agagcgatgt acttgatttt accgtgagaa atgcgaatag taggagatcc      1200
     agtactccca gagctaaaga ggacaaggtc gtcaacgctg atgaactgtt cgacaggatc      1260
     atgcagcaag tggatagagc cataacgtcc aagttgaaaa ccttgaacat aggaactaga      1320
     gtagaggata aagaagtgaa gaaaattgaa aagttgtcaa gtaggccgtc agtaagggaa      1380
     actaagccgt acaaagcagt agcaaaagta aacaggcaac cggaaaagga gggtgaacag      1440
     agagacgcag gtaggtcaaa aaagaaacga aatagggttt attccgaatc atctaatgag      1500
     agtagagcta gcgagcgaga tagtgaccgt aatagcgaga gtgcagacac agaaaccgag      1560
     gtcgaagaac aaacggataa cggaagacgg ttgaagcgaa ggcccagacc agtctgtgac      1620
     tggaaattga aatatgatgg tagagatgat ggaagaggtt tgaataaatt tgtgtctgaa      1680
     gtagagttca tggctgaagc ggagaacatc agtaaacgca gtttattcaa cgaggctata      1740
     cacctgtttt ccggtgacgc tagagcctgg tatatagagg gaaggaggaa tcgagagttt      1800
     cgtaattgga atgaacttgt agtcgaattg aagttagaat atcaaccacc cgatatggac      1860
     taccattacg aacagcaagc ggccgccaga aggcagaagc gaggagaaaa attccaggat      1920
     tattattatg cggtaaagga catttttgag cagatggctt ctccgccaac ggatcaacgg      1980
     aaatttgaaa ttattttcag aaatctccgt tcggactata aaaactcatt gttggtaaaa      2040
     ggagtccgaa cgttgagaat gttgaaggtg tgggggcgta aattggactc agccaactgg      2100
     ttcttgtatc gcaagcagga gggtgaacaa gggtcgaaat cagcacaagt gcatgaaatt      2160
     accacagcgt caccagcccg tgaacaaagg cctccgagga acaattggaa ggaatcgggt      2220
     ttcaaaagta gacaatcgtg gaggaatccg aactctggtg gatatcaagg tcctagaaat      2280
     gatcctcgag ggttcagaaa accttcaccg gaaagcagca aatcagacca acagacgaaa      2340
     cccaaacaaa tgcagtcaaa tgaagatccg aaagagggga gtagcaaaga acttctgcag      2400
     aagagagtgg atgcgtatcg cattccagag aggacagtgt gctacaattg tcgtggaaat      2460
     tatcaccatt caagcgcctg tttgaaagct aaggaagttt tttgcgtagc ttgcggattt      2520
     caaggatttc tcaaaccgga ttgcccattt tgtggaaaaa acgggaagcg gtcgatgtaa      2580
     gaggtcgtcg acgcaaacct aaaaagcctc taacgaaatt tgtttcttct tctcgagaaa      2640
     tagaagagtt gattgtgcag gttgacggag ataatcgtcc ttttgcaaaa gttgatatct      2700
     tgggattttc agtgatcggc ttgttagatt gcggagcaca gatgacggtt ttaggagttg      2760
     gttgcgataa acttctacgt gacctaaaat tgaagctgct gccaactgat ttgaagctga      2820
     cgactgctga gggatctcgt ttaaacgtta aaggatacgt caatctacct ataacattca      2880
     atggcaaaac tcgactggta acagccatcg ttgcgcccac cctgaaccga cgccttattt      2940
     taggaatgaa tttctggaat gttttcagaa tagaaccatc aataaatcag gaagaatgtg      3000
     ctgtagagga gataagatgt gagctggatg aggaactaaa atttactgag gaagaagaac      3060
     agatgttaga ggatgtaaag aaggagttta aggttttcaa agaaggagat cagttggagg      3120
     taacgcccct gatatcacac aaaattgaat ttgaggactc gttcaaaaat gctggtccaa      3180
     tacgtttgaa cccgtaccct tggtctccag aaatccagaa atgcgtaaat gacgagttgg      3240
     ataaatggtt ggcgtctgga gtagtggaac gatcaaacag tgattgggct ctgcttatag      3300
     ttccagtgac caaaaagggt gaatccggag ctgagggacg cataaaggta cgcatgtgct      3360
     tagatgctag gaaattaaat gaaagaaccc gtagagatgc atatcctctt ccgcatcagg      3420
     accgtatact aggaaggctg agtgcttcta aatatttgtc aacgatagat ttatcaaagg      3480
     cgttttggca aattccgtta caaccagaat cccggaagta tacggcattc cgagtgtttg      3540
     gaagaggact tttccagttc actagactac cgtttggatt ggtcaacagt ccggcgactt      3600
     tatagcgttt aatggaccaa gtgttgggtt acggtgaact ggagccaaac gtgtttgtgt      3660
     accttgacga catcgtcata gtaagcaaca cgttggagga acatctccgg aaccttaaag      3720
     aggttgcaaa acgtcttaaa gcagcaaatc tttcaatcaa cattgaaaaa tctaaatttt      3780
     gcgtgcaaga gcttccatac ttaggatttg tattatccaa aaatggcatt cgacctaatc      3840
     ctgataagat tgaagccatt gtgaacttcg agcgacccac ttcagtaagg tccctaagac      3900
     gttttctggg catggtaaat tactaccgac gatttatatc ggattttagt gaagtgacgg      3960
     ctcctttaac taatttattg aagggaaaac cgaaaattgt tcactggaat gatgaagctg      4020
     aaaatgcatt cattattttg aaagaaaaac tgatcacagc tccaatctta gcctgtccgg      4080
     atttcggaaa gccatttaca attcagaccg atgcgagtga caccgctata gcgggagttc      4140
     tcacacagga tgtggatggg aaggaacacg taattgcgta tttttcccgg aagcttacga      4200
     cctcacagcg ttcatggaaa gcggcagaga aggaaggagt ggctgctcta gaggcgattg      4260
     aaaaatttat gtagagggag ctcggtttac cttgattacg gattcgccag cgctttcatt      4320
     cataatgaac tctaaatgga aaccgtcatc caaacttagc cgctggagca tgttacttca      4380
     gcaatatgat atggtcgtca aacacaggaa aggatccgaa aacgtagttc cagatgcact      4440
     ttcacgtgca gtggaaacta tagatttgag caaagaagat tggtacaacc ggatgtacaa      4500
     aaaagtctca gatactcctg ataattttcc agacttcaaa attgaacaag ataaactgta      4560
     taaacttgtc tcttcgccca cggatgcaat ggattaccaa tttgaatgga agctttgttt      4620
     accggaaaat ttacgcctcg aggtaataaa gcaggaacat gatcaatcat tgcatccagg      4680
     gtatgaaaaa actattcata ggctgaaaat acggtattac tggcctaaaa tggccatgca      4740
     ggtcaagaaa cacgtgcgtt catgcagtgt atgcagacaa tgcaaaccct cgactttgcc      4800
     aacagcgcct gtcatgggaa accaaagagt gagcagcaaa ccgtttcaga ttttggcact      4860
     cgactttatt caaaatcttc cccgcagtcg caatgggaag agtcatttga tggtcctaat      4920
     ggatttattc tcaaaatgga ctcttctgct accgattagg aggattgaga gcaaagaggt      4980
     gtgtcgtcta gtagaggatt gctggttcag gagatttgga accccagagg tcgttatttc      5040
     cgataacgct accactttca ccggaaagga atttcaggag ttgttggttc gcagagggat      5100
     acaacactgg cctaactcgc gtcatcacag tcaggccaat cctgttgaaa ggataaatcg      5160
     cactataaat gcatgcttac ggacttatat ggagaaggat cagcgattat gggacaccag      5220
     aatagctgag gtcgaggaat tgctgaacac taccatacat agctccactg gtctatctcc      5280
     ctatcggatt atatacggac atgaaaaaat cactatgggc aatgagcatc gattagagcg      5340
     agatacaaaa gacatctctt tagcaaaaag agacgaaata cgtcagaaat tgaatgaaaa      5400
     tatattcaaa attgttgctg acaatttgaa gaaaagtcac gaaaaggtcc gaaaaactta      5460
     taacctacga cataggaaat tttgtccgac ttaccatgta ggacagaagg tctacaagcg      5520
     taattttaga caatcgtcgg ccgcagagcg gtataatgcg aagtacgggc cgctgtatat      5580
     gccatgtgtc attgtggcga gacgtggaag cagctcctac gaggtggctg atagctcggg      5640
     taaaatccta ggggttttct ctgctgcaga ccttcgtccc ggggatgatg aaaagcccta      5700
     aaacacaaac tagggttaat accaacagca caatattgta tcggcatcgt tgtacaaagc      5760
     ctgtagttgc cgcttatgga tcctcatctg gtattcataa acataacggg gtcatcgttc      5820
     gacctagggc tgctgtgcac tcttgtgcgt agagatcgtt catgctcatg gttgtgctct      5880
     cgcgtatcca catttggagc gagagatggg taactcatga gtgcagggag tttaagagcc      5940
     aatatgaaag tatctggttt ctgcgatcgt ccagttgttc gatcgataat tgctagcaaa      6000
     aagagaaagc gagttggcat cagtatgatt gatatagggt gacgtcacat aggagttagt      6060
     attagggatc attggggaag aaaggagaga tgttcttttg tttaggcgcc gtacaaaaga      6120
     accgtgctag cacgttgagg aggaatgctt tcctaaatat aagggagaga gataataatt      6180
     caagataaac gtttaattgc atgtaatgaa tagtaaatta taaataacct gtttgtaata      6240
     agtattaaat taaaagaaaa acgatcgttg aaacagtcaa acagagcact taccctaaac      6300
     aatagaagag tcagtttagc gtccaataga catgataggc tcgttctcag cataattccc      6360
     tattagtcgg gtggccaacc ggctgaatca tgctgggaat aatccatatg tttccaatgt      6420
     ttgtccatga tcagttagtt cgtccaatag attcgccact attttaatat atcttgtcca      6480
     gtttgattct tttgtttaat tgtcccaatt gtagatttcc aattttagtg tccgtccaga      6540
     tagaatgtgt aataataact attcaaccat ctccttttca ttagctaccg ttggtagtat      6600
     tggataaaag agagtaatgg tagacttatc gtttaaccat aatgggtgcg tgcttatcaa      6660
     cacacatact aacaatataa aatcacacgt gattgattat ggcaagttcc ttaggggaac      6720
     ttggccatta gttgtcagcc gattttaaaa tgttgtgtca tgtctcaaaa aaacttttaa      6780
     tcaattttat actgcttcgc gattcgaaaa aaataagaaa attattatag catttgtctt      6840
     tgtggtttca atttgttaat aagcgtttta tgtaggtaaa aaaaaatata caaataattg      6900
     aagatcttca attatttacc gtggtgggag gatag                                 6935
//
ID   Gypsy-174_AA-LTR repbase;    DNA;    INV; 1119 BP.
XX
AC   supercont1.141;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-174_AA_;
KW   Gypsy-174_AA-I; Gypsy-174_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1119
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.141; Positions  151063  149945.
XX
SQ   Sequence 1119 BP; 314 A; 264 C; 257 G; 284 T; 0 other;
     tgtaaccgtt cagttacaga atttctagat ttattttaat tttgtgcatt ttgtagggtg        60
     aactgtagtg tttttatggt ttgtgtttgg taaaattcgt aattgtttgt gacaagcata       120
     aattgtaatt taaataaact gtggataaaa tgggcgttgg gtggaaatca actgtggtag       180
     gaaatgtagg caacatgcaa ggtaatggac gatgtttatg ctaccaagga tggaaatatg       240
     gagtaaggat aaggaacaca aggaaattat ggactggagg gaatcataag gcttgagcta       300
     gatcgccatg atcacttttt gatcggcgtt cgtgtgagac acaagtgagt gagagttagg       360
     tggcaaaatt tgtgaagttc ggtgaaccgt aggagaggac attgaacccg ttcattcagg       420
     accttttatt agtgcctttt ggtactgagc gataatacgc catcctcaca gtccacacga       480
     ttcggcctag atcgggtatc cgatctacgc ctaaccgcaa aagactactc tcaggtctca       540
     ttcttacgac cgtatgagag atcatcctcg ggccgttgag ccctaaacat aaaggaggac       600
     ccttctcggc gtggccaata cggtctcgtc cgtggtccgt cgattccgac aaagaaggaa       660
     gacgccgtta gccaagccta ggtcacgtaa gtggccgatt cacagtggaa acgccattcc       720
     acttgtccac cgtcaccaga cccgatcctc agcaaccgac gccatcaacc gccattgcca       780
     tcagcagtca tcagcgagcg ctcgccatcg caacggtacg tacccaacga tcctgaaccg       840
     ccttaaaacc acaatagccc aataaacaca atagacactc cacagtagtt ttttcaataa       900
     attagatctt tttcctccaa acacacacac ttctcaatag ccaaagaaag accatagttc       960
     ccgcacactt agatccgcgt agcccctccg aattacccag tagcatgccg gccctgcgac      1020
     acagttcagg ggtctcatgc tactgagcta gatatccggg agtcttggtt ctgccgtgag      1080
     cctatagagc tgcatcagtg taagtctcaa acagtctca                             1119
//
ID   Gypsy-175_AA-I repbase;    DNA;    INV; 5100 BP.
XX
AC   AAGE02026183;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-175_AA_;
KW   Gypsy-175_AA-LTR; Gypsy-175_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5100
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026183; Positions   52974   58073.
XX
CC   Positions [2325-2825] - Reverse transcriptase
CC   Positions [3960-4430] - Integrase core
CC   'CCATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           825..4952
FT                 /product="Gypsy-175_AA-I_1p"
FT                 /translation="MTTANLVGVIEPYVVGNSFTEYAERFDEFFEFNQIDD
FT                 NRKRSTFCTLSGPAIYSEIKLLFPGKKVKELTFTEIIQKLKSRYDKVDSDV
FT                 IQCFKFNTRVQRADETTESFILDLKLQASLCDFGTYKDKAIRDRILVGVYD
FT                 KNLQKQLLKEEKLTLADAERIITNYELANTRAAAINTESQQVASVRQRLGR
FT                 RATFDQNRNNNYYNRRDRSRSRSTSFQRRVRFSEDGRRNDQYANYYCNGCG
FT                 MKGHIKRQCRNTGGLNTRVHNASKVQSVVVPSAGVEYSLKQAMNRLKMQMS
FT                 DDSGDDSSGEYMCMNVTSINKVSEPCLVKVTIEEKSVLMEIDCGSAVSVMG
FT                 IRTFIELFNTPLRKSNRKLVVVDGGDLKVFGETKVLVCFQNRTEYVSLVVI
FT                 DNSESGCQHRFTPLLGREWLDVFLPEWRYTFQKPNNVYNITTNDQASCMSD
FT                 IENKFANVFKKDFSSPIVGYEAELVLKDEQPIFKRAYEVPYRLRERVCEYL
FT                 DKLENENVITPIKTSEWASPVIVLIKKNNQIRLVVDCKVSLNKVIIPNTYP
FT                 LPVAQDLFARLSGCKVFCALDLEGAYTQLSLSKKSRKFMVINTIKGLYTYN
FT                 RLPQGASSSAAIFQQIMEQILLGIENVTVYLDDVLIAGKDLEDCKKKLQIV
FT                 LERLSAANVKVNWEKCKFFVSNLPYLGHIVTDKGLLPSPDKLEIIRAAKVP
FT                 SNTTELKAYLGLVNYYGKFVPHLSTKLSELYNLLRKNVNYVWTNACQRAFE
FT                 NSKHELVNADLLEYFDPKKPLVVVSDACNYGLGGVLAHVIDEVEKPICFTS
FT                 FSLNEAQKKYPILHLEALALVCSIKKFHKFVYGQKFVVYTDHKPLVGIFGK
FT                 AGGNSIYVTRLQRYVLELSIYDFEIVYRPSTKMGNADFCSRFPLQQNVPLE
FT                 CDVEYVKSLNLTHELPINFSKIACETANDDFLVKLMSFLQNGWPEKIDKTF
FT                 LNIHTNQHDLEIVEGCVMFQDRVVIPFKLRKQILSILHVNHSGIIKMKQLA
FT                 RRTVYWPGVNTDIENFVKDCDTCTKMSVVPKPSSTTEWIPTTRPFSRLHAD
FT                 FFNFEQKVFLLIVDSHSKWLEIEWMRNGTDASRVIRRFTKMFSCFGLPDVV
FT                 VTDGGPPFNSTLFVSFLEKQGIKVLKSPPYNPSSNGQAERMVRLVKDVFKK
FT                 FLLEPEVRNWNTEDQIDYFLINYRNTCVTEDGSFPSEKIYSYKPKMLIDLI
FT                 NPKKHYSRQLVESPSSYKDHQGTLTTSTQTLVKNDPFDSLMSGDKVWLKNN
FT                 HVNRVEKWIEAKFVRRLSINVFQVAIGNVTSNAHRNQLKIPRIKSPTMNVM
FT                 VPVTSHKRSRVVTVAEEDTPTTSASFQTNEPNSKPIIDPAVILPTLRRSTR
FT                 TKKQKINDDFIYS"
XX
SQ   Sequence 5100 BP; 1742 A; 841 C; 1032 G; 1485 T; 0 other;
     actgtcgacg aggtgaagga ttttttttac gtcgcgtgtg atataactaa acaaattgaa        60
     aagttagtaa aatatttatg tggtgaatcg aacgctttaa aataaaagca taattccact       120
     caaatcacca tttatgtggt aaaaaaaaag aaaaaaggct tctgctaaga caagtgaagt       180
     gaaaagccat tttgaagagg caattattac aattgtgaca aaaggctatt cccacgatag       240
     ataatagaag ttcattgacc tcacaactga gggtgaataa ttgatctaaa ggtggtttaa       300
     ttaagcaaga taaataaatt caacaacaaa gtgatagcta tattacttta ttgcacctga       360
     ataccaagta tgatatatgc gttacatgtg atcggctgag ctataggcaa gagcgctgat       420
     agtaaaaaaa aaataaataa ataatacgag cagttccatt tagtgagctc cagctaagat       480
     ttgagtatac ggaggtgcat gatttcccgt attgagtgat aaaaaaatag aaaataaaat       540
     ttagtagtta ccgaagttca tatccagaga ttcttcagta cagtgagtgt caacgagcag       600
     ccgagagagc gagcgtaaca accgacaaca gagtcttctc ttagagtcat agataaacta       660
     caaccacaac agcacataca ctggtgagag agctgatttg tctcagctga acaagtgtga       720
     gaggtaaaac aacaaacaat cggtgagtcg tcgtattact accgttcttc tattgatttt       780
     acttttattt tgattcctca ttcgtatcca tccgtcttgt agatatgact actgcaaacc       840
     tggtcggtgt tattgaacca tatgttgttg gtaattcctt tacagaatat gccgaacgtt       900
     ttgatgagtt ttttgaattt aatcaaattg atgataatag aaaaagatct actttttgta       960
     cccttagtgg tccggcaatt tactcggaaa tcaaactttt gtttccgggt aaaaaagtaa      1020
     aagaattaac ctttactgaa ataattcaga agttgaaatc acgttacgat aaagtagatt      1080
     cggatgtgat tcagtgtttt aaattcaaca cgcgggttca aagggcagat gaaaccactg      1140
     aaagtttcat tcttgacctt aaactgcaag catctttgtg tgattttggc acttacaaag      1200
     ataaagcaat aagagatcga attttagtag gcgtttacga taaaaattta caaaagcaac      1260
     ttcttaaaga ggaaaaactt acactagcag atgcagaacg tataattacg aattatgaac      1320
     ttgccaatac acgtgcggct gctatcaaca ccgaaagtca gcaagtagct tctgttaggc      1380
     agcgacttgg tcgaagggcg acctttgatc aaaatagaaa caataattat tacaaccgaa      1440
     gagatcgaag tcgcagcaga agcacgagct ttcaaagaag agtcaggttt agtgaagatg      1500
     gaagaaggaa tgatcaatac gccaattatt attgtaatgg ttgcggtatg aaaggtcata      1560
     ttaagcgcca atgccgcaac actggaggct taaatacaag agtacacaat gcaagcaagg      1620
     ttcaaagcgt tgttgttcct tctgcaggtg ttgagtatag cctgaaacaa gcgatgaatc      1680
     gattgaagat gcagatgagt gacgattctg gtgatgattc ctcaggtgaa tatatgtgta      1740
     tgaatgtaac gtctattaac aaagtaagtg aaccttgcct ggtaaaagtt actatagagg      1800
     aaaaatcagt gcttatggaa attgattgtg ggtctgctgt ctctgtcatg ggaattagaa      1860
     ctttcattga attattcaat acacctctcc gcaagagtaa cagaaaactt gtcgttgtag      1920
     atggaggaga cttaaaagtt tttggagaaa ctaaagttct tgtgtgtttt cagaacagaa      1980
     cagaatacgt atctctggtt gttattgata atagtgaatc tggctgtcaa catcgtttta      2040
     ctcccttatt aggtcgagag tggttagatg tttttttgcc agaatggaga tatacgttcc      2100
     aaaaaccaaa taatgtatac aatattacaa ccaacgacca agcttcctgt atgagcgata      2160
     ttgaaaacaa atttgctaat gtttttaaaa aagatttttc atccccgatt gttggttatg      2220
     aggctgagct ggtactaaaa gacgagcaac caatattcaa acgtgcgtat gaagtaccat      2280
     atagattacg agaaagagtt tgcgaatatt tagataaatt agaaaatgag aatgtaatca      2340
     ctcctatcaa aaccagtgaa tgggcatcac ctgtaatcgt tttgattaaa aaaaataatc      2400
     agatccgatt agtggtagac tgtaaagttt cacttaacaa agtgattata ccgaacacat      2460
     acccattgcc agttgcacaa gatctttttg cccgcttgtc tggatgtaag gtattttgtg      2520
     ccctagacct tgaaggagcc tacacacaat tatcactttc aaaaaaatct agaaaattca      2580
     tggttatcaa tacaataaaa gggctttata cgtacaaccg cttgcctcag ggagcttctt      2640
     cgagcgctgc aatttttcag caaataatgg agcaaatatt gttggggatt gaaaatgtaa      2700
     ccgtttattt agatgatgta ttgatagctg gaaaagatct ggaagactgt aagaaaaagt      2760
     tgcaaatagt tttggaaaga ctatcagcag caaatgttaa agtaaattgg gaaaagtgta      2820
     agttttttgt ctccaatctc ccttatctgg gtcatatagt tacagacaaa gggttgctac      2880
     ctagcccaga taaattagag ataataagag cggctaaagt tccatccaat actacagagc      2940
     tgaaagcata tttgggtcta gtaaattact atggaaaatt tgtacctcat ttgtctacaa      3000
     agctgagtga gttgtacaat cttttgcgaa aaaatgtaaa ttatgtgtgg actaatgctt      3060
     gtcaaagagc ttttgagaat agcaaacatg aactagttaa tgccgatctt ttagaatatt      3120
     ttgacccaaa gaaaccatta gtggtggttt ccgacgcttg caattatggt ttgggagggg      3180
     ttcttgcaca tgtgatcgat gaagtcgaga aaccaatatg ttttacatcc ttttccttaa      3240
     acgaagctca aaagaaatac ccaattttac acttagaggc tttagcactt gtatgtagta      3300
     tcaaaaaatt tcataagttt gtctatggcc agaaatttgt agtctatact gaccacaaac      3360
     cattggtagg aatatttggc aaagctggag ggaattctat ttatgttact cggctacaga      3420
     gatacgtgtt agagctgtcg atatacgatt ttgagatagt atatcgacct tccacaaaaa      3480
     tgggaaacgc tgatttttgt tcacgttttc ctttgcagca gaatgttccc ttggagtgcg      3540
     acgtagaata cgtcaagagt ctcaacctta cccatgaatt acccataaat ttttcaaaaa      3600
     ttgcctgcga aacagcaaat gatgactttt tggtcaaatt aatgtctttc ctgcagaatg      3660
     gttggccaga gaagattgat aaaacatttt tgaatattca tacgaaccag cacgatcttg      3720
     aaatagtaga aggatgtgta atgtttcagg atcgtgtagt tattccgttt aaattgagaa      3780
     aacaaatact tagtatctta catgttaatc attccggtat aattaaaatg aagcaacttg      3840
     cgagacgaac agtctactgg cctggagtta atacagatat agagaacttt gtgaaagatt      3900
     gtgatacctg tacaaaaatg tctgtagtac caaagcctag ctcaaccaca gagtggatac      3960
     caacgacgag accatttagc agattacacg cagatttctt taattttgaa caaaaagtgt      4020
     tccttcttat agtggatagc cattcgaaat ggctggaaat tgaatggatg aggaatggaa      4080
     cagacgcttc aagagttatt aggagattca caaaaatgtt ttcttgtttt ggactaccgg      4140
     acgtggtagt taccgacggc ggtccacctt ttaattccac cttatttgtg tcgttccttg      4200
     agaagcaagg tataaaagtg ttaaaaagtc caccttacaa cccatctagc aatggtcagg      4260
     cagagcggat ggtgaggctt gttaaggacg ttttcaaaaa atttttgctt gaaccagagg      4320
     tgcggaattg gaacacagag gatcagattg actacttttt aatcaactac cgaaacactt      4380
     gtgtgacgga agatggatct tttccatccg agaaaatata cagctataaa ccaaagatgt      4440
     tgatagatct tatcaatcct aaaaagcatt attcaagaca gcttgtagaa agtccctcta      4500
     gttacaaaga ccaccaagga acactaacaa cttcaacgca gacattagtt aagaatgatc      4560
     catttgacag tttaatgtct ggagataaag tgtggttgaa gaacaatcat gtgaatcgtg      4620
     tagaaaaatg gatagaggca aaattcgtaa gacgactttc catcaatgtt ttccaggtgg      4680
     caattggaaa cgtaacttca aacgcgcatc gcaaccaact gaagataccg aggattaaat      4740
     cgcccaccat gaacgtaatg gtcccagtta cctcacataa gaggagccgg gtggtaacgg      4800
     tggcggagga agatactcca acaacatcag cttcgtttca aactaatgaa ccgaattcga      4860
     aaccaataat cgatccagct gtaattctcc ctacgctccg aagatcaacc aggacaaaaa      4920
     agcaaaaaat taatgatgat tttatatatt cttgagctcg attaagaaaa tgcatgaatt      4980
     atttattgtt ttgtttttag cctatttgaa ttaatttctg ttgaacttaa aatgtaaatt      5040
     ataatttaaa gtatgaattt tctgtgtata gcttgtagaa taatcttaag ggaaaagaat      5100
//
ID   Gypsy-175_AA-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   AAGE02026183;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-175_AA_;
KW   Gypsy-175_AA-I; Gypsy-175_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-179
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026183; Positions   52795   52973.
XX
SQ   Sequence 179 BP; 49 A; 31 C; 37 G; 62 T; 0 other;
     tgttatatct gtgaattcga cctaaacgcc gattcctgtg gtctgagtat tcatttcatt        60
     gtgagtgcct tttgggctat cgaatagtat acaggaataa atgagtttag ttttgactcg       120
     agccgtaagc tacaagcaac ggtgttctat atttgatatc tgaaacgcaa tacatttca        179
//
ID   Gypsy-176_AA-I repbase;    DNA;    INV; 6005 BP.
XX
AC   supercont1.156;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-176_AA_;
KW   Gypsy-176_AA-LTR; Gypsy-176_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6005
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.156; Positions  245943  239939.
XX
CC   Positions [4432-4908] - Integrase core
CC   'GGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..2128
FT                 /product="Gypsy-176_AA-I_2p"
FT                 /translation="MDLEFSHLYKNLLIHHLERSEIEHELTIRAVQFEPTE
FT                 TRAAIQRRLRDRLKEEREKSLADLDFIRCFKSVEAEIKEIDENLSQIRNFL
FT                 ENKTRFEGIRESLKTRLVHYFERTRRVQQIADKEEDLRDLDELICTIRETM
FT                 NTHFPSIGPNEVIQEQVIQQIVQTLSDLNLIPSNTNVGSVNQLREEANANK
FT                 NDNLLDEAIGGSQQREPANPSGRRSLKSLRKTTNVQSGLNSLNRGSKSLLI
FT                 SPVHSGGSSQVRSERLISKFSLEPISSRNKVPQRETSDSVSSVESDSSNNS
FT                 VVPSARSRRHSRYSQKRRPVSEWNLKYDGKDNGQNLMRFIKEVQFYAKSEK
FT                 VSDKELFRSAIYLFKDQAKVWFMSGIENEDFSTWKELLSELKREFLSPDHD
FT                 HVNETRAISRKQGPKERFSDFLAEMQRIFNSLTRPMTEKKKFEIVFRNLRA
FT                 DYKAHAIASNIDNLADLKKFGRQLDATFWFKFNANTQETNGSRNRAQVNEV
FT                 SFGQKPRQNPPAEDSNKKFKSRQFYRSKPERSDEEPTKKKTEETAKPPTSK
FT                 PQTSDKGLQVLVEKYKVPAPGTCFNCRLPGHHAADCEGPKHKFCRKCGFLN
FT                 YDTNNCPFCAKNAQ"
FT   CDS           2494..5292
FT                 /product="Gypsy-176_AA-I_1p"
FT                 /translation="MTFNGETKLIETLVVPELKRKLILGTDFWKAFQIVPS
FT                 VSSNTVEELEVQPPTPDLTLEQLSELESVKAQFKVAEEGKLDTTPLICHRI
FT                 ELSEEARKKSAVRINPFPTSPKRQEQINKELDKMLEAGIIERSYSDWALRL
FT                 VPVDKPDDSVRLCLDARLLNERTVRDSYPLPHADRILSRLGPCKYISTIDL
FT                 SKAFLQVPLHPKSKKYTAFSVLGRGLFHFTRMPFGLVNSPATLSRLMDRVL
FT                 GGGELEPKVFIYLDDIIIISDTFEEHMKLLREVARRLGQANLSINIDKSRF
FT                 CVLEVPYLGYILSTQGLRPNPNRVEAIVNFERPNSLKALRRFLGMCNYYRR
FT                 FISGYSDLVRPLTDLLKDKPKSVRWSDPAEKAFIKVKELLISAPILTNPDF
FT                 SKSFCIHCDASDYAIAGVLTQSHDGVDKPISYFSQKLTGAQQRYFATEKEA
FT                 LAVLKSIEKFRCYIEGSKFTVYTDASALTYILRSTWRTSSRLCRWSIELQR
FT                 HDMIIKHRRGVDNVVPDALSRSVEELSASPTSQECYSNMMQKVQTEPERFK
FT                 DFRIDNGVLKKFVATSNDLLDYRFEWKLCLPSDMREKVLVEEHDDALHLGV
FT                 DKTIAKVKRKYYWPQLTKDVRSHIQKCTICKQSKPSNRAQHPEMGRQRITT
FT                 KPFQLIALDFIQSLPRSKTGNAHLLVIMDIFSKFCLLFPLRKISAPQVCQI
FT                 LEQNWFRRYSTPEYLISDNATTFLSKDFKALLDKYGIKHWRNSRHHSQSNP
FT                 VERLNRTINACIRTYVRTDQKMWDSRVSEIEFALNSTPHGSTGFSPYRILF
FT                 GHEIIGKGDEHRMDRDVDEVSDEERVGRKLEIDRLIHNIVYKNLRKNYEKN
FT                 ANIYNLRNKASTQSYAVGQKVLKRNFQQSSAIDFYNAKLGPMYLPCTVMAR
FT                 IGTSSYELANEQGKSLGIFSAADIKPDDS"
XX
SQ   Sequence 6005 BP; 1933 A; 1333 C; 1225 G; 1514 T; 0 other;
     ttttggcgcc cagcaaattc tacattacag tgtgttacac gtgattcaca acttcaatcc        60
     cgtggaggga gagaaaaaaa aatctagttt ttttcaaatt tacatcgttc tccaaacgat       120
     agtagttgct ttaggatttt caaattttgt agtgaacaaa tgatagtaca tcaattagtt       180
     tttcaaattc aatttgtcgt ttacccacga tagcaaatca actagtttat tcaaattttg       240
     tcgttaaaca acgattgtta ttacctagta ttcaaattta aaaactataa tcatggattt       300
     agaatttagt cacctgtata aaaacttact tattcatcac ttagagagat cggagattga       360
     gcatgaacta actattagag cagtacaatt cgaacctacc gaaacacgtg ccgcgattca       420
     gagaagatta cgcgaccggt taaaagaaga aagagagaaa agtctagcag atttagactt       480
     tatcagatgt ttcaaatccg tcgaggccga aatcaaagag atagatgaaa atctttctca       540
     aattaggaat tttttggaaa acaaaacacg gttcgaagga attcgcgaga gtttaaaaac       600
     gcgcttagta cactatttcg agagaacaag aagagtacag caaattgcag ataaagaaga       660
     agatcttcga gacctcgatg aactaatttg cactattaga gaaacgatga acacgcactt       720
     tccatccata ggtccaaatg aagtaattca agagcaagta attcaacaaa ttgtccagac       780
     cctttccgat ttgaacctca ttccgtcgaa caccaatgta ggatccgtaa atcagttacg       840
     cgaagaagca aatgctaata aaaatgataa tttgctagat gaagcaatag gaggtagcca       900
     gcaaagggaa cctgcaaatc cttccggtcg tcgttcacta aaatctttac ggaaaactac       960
     taacgttcag tcgggattga actcgttaaa tcgcgggtcg aaaagtctcc tgatctcccc      1020
     ggtacattcc ggtggtagct ctcaggtcag atcagaacgg cttatcagta aattttcctt      1080
     agaaccgatt tcgagtagga acaaagttcc acaacgcgaa acctccgatt ctgtttccag      1140
     tgtggaatca gatagttcga ataactcggt ggttccctca gcgcgttcgc gtcgtcatag      1200
     ccggtattcc caaaaacgca gaccggtatc tgagtggaat ctgaaatacg atggtaaaga      1260
     taacggacaa aacctcatgc gcttcattaa agaggtgcaa ttctacgcga agtccgaaaa      1320
     agtatccgat aaagaattgt ttcgttccgc gatatatttg tttaaggatc aggctaaagt      1380
     ctggttcatg tcgggcattg agaacgagga tttttccacg tggaaagaac tcttatcgga      1440
     attgaaacgc gaatttctca gccctgacca cgatcacgta aatgaaacgc gcgcaatatc      1500
     acgcaaacaa ggaccaaaag aacgattttc tgatttcctt gcagaaatgc aacgaatctt      1560
     caattcccta actagaccca tgacggaaaa gaagaaattt gaaattgtct tcaggaatct      1620
     tcgcgccgat tataaggctc acgcgatcgc gtcgaacatt gataacctcg cggacctcaa      1680
     gaaattcggt cgtcaattag acgcaacgtt ttggtttaaa tttaacgcga atacgcaaga      1740
     aacgaatggg tcgcgaaacc gtgcgcaagt gaacgaggtg agcttcggcc aaaaacccag      1800
     gcaaaaccct ccggctgaag attcgaataa aaaattcaaa tctcgtcaat tttaccgatc      1860
     aaaacccgaa cgctcagatg aagaacccac taagaagaaa accgaagaaa ccgcgaaacc      1920
     gccaacatca aaaccccaaa cgagcgacaa aggtttgcag gtcctggttg aaaagtataa      1980
     agtacccgcc ccaggcactt gcttcaattg tagattacct ggtcatcacg cagctgattg      2040
     cgaggggcca aaacacaaat tttgtcgaaa gtgtggtttc ttaaactacg acactaataa      2100
     ttgtcctttt tgtgcaaaaa acgcacaata gacggccagc aggggtgggc tcgtcaggaa      2160
     aggcatagaa atccccttaa cacgaaggac ctcagtaatg ctttacctca ttatgggttc      2220
     cacccgtttg agaataatga ttacgaccat gaacctaaag agcttgaaga gttgttcatc      2280
     caattacaga atgatgagcg gcccttcgtg caaataaaaa ttttcgaaat accaatcaca      2340
     ggcctactcg acagcggtgc acaccgtagt atacttggag ccgaatcgca taaaatcata      2400
     gacgccagta agctcaagct tttacccact aaagtcgatc ttgtgacggc tagtggccaa      2460
     aaactcagcg tccagggatg tgtaaacctc cccatgacgt tcaatggcga aacgaaactg      2520
     attgagactt tggtagtacc ggagttaaaa agaaagctta tcttaggtac tgatttttgg      2580
     aaagcctttc aaattgtgcc ttcagtttcc tcaaatacgg tagaagaact tgaagtacaa      2640
     ccaccaactc cagacttgac cctagaacaa ctctcagaat tagagtctgt gaaagctcaa      2700
     tttaaagtgg ccgaagaagg aaagctagat actactcctc tcatttgcca ccgaatagag      2760
     ttatctgaag aggccaggaa gaaatcagcc gttcgtataa atccattccc aacttcacct      2820
     aaaagacaag aacagataaa taaggagctc gataagatgc tagaagcagg aataatagaa      2880
     cgctcgtata gtgactgggc actacgatta gtgccagtcg acaaaccaga tgattcggtg      2940
     cgattatgtc tcgatgcacg gctacttaat gagcggacag tccgtgattc atatccgttg      3000
     ccacatgccg accggattct tagccggtta ggtccgtgta aatatatatc caccatcgat      3060
     ctttcaaaag cctttctaca ggttccttta cacccaaaat caaagaaata caccgcattt      3120
     tcggtactcg gccgtgggct tttccacttc acgaggatgc ctttcggact ggttaacagt      3180
     ccggcaaccc tatccagact aatggaccgt gtccttggtg gaggagaact agaaccaaaa      3240
     gtttttatct atttagatga tatcatcatc atcagcgaca cattcgaaga acatatgaag      3300
     ttactccgag aagtggcaag gcgtctaggg caagctaact tgtccataaa tatcgataaa      3360
     tccagattct gcgttttgga agtcccgtac ctcggatata ttctgagtac gcaaggactc      3420
     cggccgaacc ctaaccgagt ggaggcgatt gtcaattttg aacgtccaaa ctccctcaag      3480
     gccttgcgac gttttttagg aatgtgcaat tactatagac ggtttatatc cggctatagt      3540
     gatttagtac gacccttaac tgacctcctg aaagataagc caaaatcggt acgctggagt      3600
     gatccagctg aaaaggcgtt catcaaagtg aaggagttac tgatcagtgc cccaatccta      3660
     acgaacccag attttagcaa atctttctgc attcattgcg acgcgagcga ctatgcgatc      3720
     gccggcgtat taactcaatc acatgatgga gtagataaac ccatttcgta cttttctcaa      3780
     aaattaacag gggcacaaca acgctatttc gccaccgaaa aagaggccct tgctgtgcta      3840
     aaatccatcg aaaaatttcg gtgttatata gaaggttcta aatttacagt gtatactgac      3900
     gcatctgccc tcacctacat tcttcgcagt acttggcgta cttcatctcg actgtgtcga      3960
     tggagcatag agctacaaag acacgatatg atcatcaagc accgccgagg cgttgacaac      4020
     gtggtgcctg atgcgctatc gaggtctgtt gaagagctgt ctgcttcacc gacaagtcaa      4080
     gagtgctata gcaacatgat gcagaaggtt caaactgaac ccgaaagatt taaagacttt      4140
     cgtattgata atggagtact taagaagttt gtagccacct caaacgacct cctcgattat      4200
     cgcttcgagt ggaagttatg cctcccctcc gatatgcgag aaaaagtttt ggtggaagag      4260
     catgacgatg ctctccactt aggagtcgat aaaaccatag ccaaggtcaa aaggaaatat      4320
     tattggcctc agttgaccaa agatgtacgc tctcacatcc aaaaatgcac gatttgcaag      4380
     cagagcaaac catcaaatcg cgcacaacac cccgaaatgg gtagacaaag aataaccacc      4440
     aaaccgtttc aactaattgc cttggatttc atccaatcct tgcctcgaag caagaccggc      4500
     aacgcacacc tactagtcat aatggatata ttttcaaaat tctgtcttct atttccgcta      4560
     cgcaaaatat cagctccaca agtctgccag atattagaac aaaactggtt cagacgatac      4620
     tccactccgg aatacctaat cagtgataac gctactacct tcttgtccaa ggactttaaa      4680
     gcacttctcg acaaatatgg tatcaagcac tggagaaatt cgcgacatca tagtcagtcg      4740
     aatccagtcg aacgacttaa ccgaacgata aacgcgtgca tccgtacgta cgttcgtaca      4800
     gatcagaaaa tgtgggattc gagggtttct gaaatcgaat tcgctcttaa tagtacacca      4860
     cacggttcca caggcttcag tccttataga attcttttcg gtcacgaaat tataggaaaa      4920
     ggggatgagc atagaatgga cagggatgtg gatgaggtct cggatgagga aagggtaggc      4980
     aggaaattag aaatcgatcg tttaatccac aatatcgttt acaaaaatct tcgaaaaaac      5040
     tacgaaaaga acgcgaacat ctacaatctc aggaataagg cttcaacgca atcgtacgcg      5100
     gttggacaga aggtcctgaa acggaatttc caacaatcgt ccgcgatcga cttctacaac      5160
     gcgaaactcg gtccgatgta cctcccatgc acggtaatgg ctcgcatagg aacgtcgtcc      5220
     tacgagctgg cgaacgaaca aggcaaatcc ctgggaattt tctcagctgc cgacatcaag      5280
     cccgatgatt cctaaaacga aagaaaattt caaaaaaaaa acgttgtccg attcaattta      5340
     aacgaatact tatcgtttcg attcccgaaa acagctgcgc agcataaagt tatgttgacc      5400
     cgtcgcgacg ttcgcaattc ggtgcacctt gcgaatgtaa acaaacataa ttaggtcaaa      5460
     caaccacgaa atttagtcag ctcacgttct tgctcaataa cttacctctc catagtgtat      5520
     acagcttcgt caataaactt ggaaggcagt atccaacacc gatcaatgta aataacaccg      5580
     gccaaggaaa acggaactgc cgagactagc gcgcgtaggt ccacctccaa gataaacgat      5640
     gaaactgcca gcattctttc acgattcaat ttcacctaca gattagattt aatcacttaa      5700
     ctattccgaa ttatgtttca ctttaagttt ctgtttactt tatgttgctg atgttgtaaa      5760
     tgatgagttt gacagttgta atgtacgtgt gttggtaaat gacctctcac tttcttccat      5820
     tcagtggaaa gagtaactca gaggctcagc agtgtagcca gattaatttc ctcacaattc      5880
     gattatttat tcacgataaa tatttcgaaa ttgaaaacgg aaaagacgtg taatctctgt      5940
     agtgtcccca ataccaactt ctaaaatgaa tttcatccat tttaagaaga gggagtgtgg      6000
     ggtaa                                                                  6005
//
ID   Gypsy-176_AA-LTR repbase;    DNA;    INV; 1569 BP.
XX
AC   supercont1.156;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-176_AA_;
KW   Gypsy-176_AA-I; Gypsy-176_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1569
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.156; Positions  239938  238370.
XX
SQ   Sequence 1569 BP; 446 A; 342 C; 309 G; 472 T; 0 other;
     tgtaaccgtt ggtcccataa tgtatgcttg tagctccacc acaagtatgc tttccttttc        60
     ctaatttgtc ctttatgagt tcttaccaaa agtaccattc gaccctgtcc taattaaaag       120
     aactcaaaca ctcatgttgt ctgacagtca ctcacctgcc caatttagtt catttgcagc       180
     ggtttgaatc ttaaacttgt atgcaagaca caatgtataa cggcacgaaa ggtaacccac       240
     ggagggcaat ttaacaaatg ttcggcaaac ttcgtgccca tttctcacat atttaacgtt       300
     tctgagcttg gcctaaatct aattctgctt ttctgtccgt gacctttcaa ggagtcagaa       360
     gtgcgcgacg tgtccttaaa atttaaagtg tgtattgcat tgtatatagt tggtgtaaat       420
     tatttaaatt attggtatat ttctaggata aaacttaaaa gcaaaaaact aaaagtagtt       480
     aaaatcgcct taaatctagt atcaccagtt attagtacgg ttagtctagt gcgaagaaaa       540
     gtttaggcat tgtgtgataa tgtggtcttt tgttctttta tatagttgta aacctattgt       600
     aaaaaccaaa aaagaatagg aaacaatcgt gtgccaacaa ccattataaa aaggtaattg       660
     taatctagat tgttaattat gtgactagat atagtggtac aagcggttag ggtatcaccc       720
     tatttcgaca accttctaat ctgcttggac aggtccgtcc agcgggcctt tttggtttct       780
     ctgttcaagt gacttatcca ggacgattgc tggtaagccc atattttccc cagagccacc       840
     tgtgcgacat ccgaggactg aaggatcggg aaacgccaag aaatctcgat ttacgacaaa       900
     cggacagaaa ttgtatccca gccttggaag acgacaaagc tctacataag ggaaccgtgt       960
     cctgttcagg acgaattagc caccgccatt gttgaaccac catttgtcac catcgtccag      1020
     ccgccaccac cattgccatc tgccacttcc accgcatgtc aacccgccgc cacctttata      1080
     aaccactgca aaaagtgtta aaccgcaagt accgctagct agagttaaga gagtgacgtc      1140
     acttcaatat taagccaatg ttaggaataa aatcaggcat gttgttaaaa tttgaatcag      1200
     tggcatagtt ctttcctagt tatccctgat ttgggtaatt tgcacctctt ttggttagtt      1260
     tcggcttttc gtgtacatta ataagtcccc caggcctcgc cttgattgga ccgttctgaa      1320
     gggcagatag tgtggttttt gagcaaccct tccgtgagaa gtctgtggtt catctttcca      1380
     gcgtaacatc gttttttatt tctcccagcg atcccactcg gtgaacataa ttgtggtagt      1440
     gtgagtgtaa ccgactgaca gcataagcga ccctgttaac ataattaccg taaatggtag      1500
     taatattatc ctagcctagc ataagtgcat ctaggcgaaa ttcctccact gagcagcgtg      1560
     taggctaca                                                              1569
//
ID   Gypsy-177_AA-I repbase;    DNA;    INV; 6999 BP.
XX
AC   supercont1.143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-177_AA_;
KW   Gypsy-177_AA-LTR; Gypsy-177_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6999
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.143; Positions  550904  557902.
XX
CC   Positions [4577-5056] - Integrase core
CC   'ACAA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           354..2156
FT                 /product="Gypsy-177_AA-I_2p"
FT                 /translation="MATSEGSALLINSHDLSEDEVDYELLIRNQLYEETEK
FT                 QKRDRLRRIFLEEGNDTIVLTEDIFFVNELPLVTKKLEEIEYGLARTIQVK
FT                 WISQLRHWKERVNRSKVVDLAQGEQKVEILFRIKNLIKIYKTTAVRLMNLS
FT                 ESEEELGDSKGSDRTQFKQENKLTKARAPRFAETSVRKENQSFDHDTLSRA
FT                 VNSTIGDYFKQFPNIAGMKISIDRDDKTKKKVIQERESMRNLGAVPKRFER
FT                 LGSIEGQDIEVHEINEKQNRKKSRKTKLPKKPMSDDSSSLDSLSSLLSSES
FT                 SSDSGSIYPSERSDDIGRRDNRVQNHRLDKWGIQFSGDIHGMDVSDFVFQV
FT                 NELMDAERIPNDRFLDHAYILFAGEARRWYFTYKKKYKTWDKFSKQLKIRF
FT                 GDPNKDRKILQDIKDRKQKKGESFVAFCSEIEGMFERMTKQYSERKRLKVL
FT                 RNNMRRWYKTKLSFFKIKNIAHLSMLCQQLDKDSGRIYSKTSLPTRKHIRN
FT                 VDASSDSSSSSSEQEVCAFDKKENRQRRYREPRPDITEPQGRENLLQLNSL
FT                 CWNCRKYGHRWRDCKQPKVIFCHACGMPGVTFMTCPKSHTLPQQAPKNESS
FT                 EEK"
FT   CDS           2066..5428
FT                 /product="Gypsy-177_AA-I_1p"
FT                 /translation="MRHAWSYFHDLSKESYASSTGSKKRELGGEVRGVSFP
FT                 ENCLDPKKENLLGDHHSNWKIYELNIKPNKCPHVLVKIVDSNIEALLDSGA
FT                 EISVMNSIDLVRRYNFKIHKTNIRVDTAGTAEHHCLGFVNVPLTFNDLTRV
FT                 VRIYIVLEFSKPLILGVNFWRAFNIVPAIEMTNKEIISIDRLNSQSQIQVC
FT                 PIRLIENYFSADESELALTFSEFVGAVHEPDSHSDDEDLSLEVPTLDFPSM
FT                 SIEEIETEHVLNREERFQLLEAISCFEFSEDDKIGRTAILEHKIQIIPGAE
FT                 IKASPMYRCSPYIQKYVDEELERMKKMDVIEPCDSDYASPLLPIKKANGKF
FT                 RVCLDSRRVNDVTENNAYPIPNLHEVLHRIKKAKYFSVIDLKEAYWQIPLA
FT                 KESRKYTAFRTKSGLYRFKVMPFGLKGAPFTMSKLMDLVLGNDLQPYVWVY
FT                 LDDIILATETLSQHVALIKEVASRLKRANLTISLNKSKFCRKSVRYLGYVI
FT                 SEQGISIDMEKIKPILDYEAPKTVKDIRRLLGLANFYQKFIKHYSDITSPI
FT                 SDLLKKDRKKFSWSSEANEALNKLKQALISPPILANPNFDLEFTIESDASD
FT                 LAVGAVLTQKQHGEKRIIAYFSKKLNSTRRKYAAVEKECLAVLWAIEAFRN
FT                 YIEGTHFRVITDARSLVWLSKVSAEKGSAKLCRWALKLQQFDFSIEYRKGR
FT                 DNITADCLSRSLSTIKVKWEDSDYSGMLNKIKVDPLKYKDYKIVDNVIYKF
FT                 VNDESLITDRRFTWKRIPTIAERVELIREIHEEAHLGTEKTLGKIRDKYYW
FT                 PRMYSDVKRFCEGCIACRKSKSDNVNHVPPMGKQKIANQPWQIIAIDYVGP
FT                 FPRAKRSGNTCLLVITDIFSKFVIIQPLKEAKAKQLSFFMENMIFLVFGVP
FT                 EIVLSDNGAQFTSKEFKNLLQKYSVSHWLTPVYFPQVNNAERTNRVITSAI
FT                 RALIKNEQNEWDANIYKIAHAINNATHSSSKFSPYFVNFGRNQISSGEEYQ
FT                 ILRDLERDLSPEEQEHSSKMKNIFEEVRKKLKIAYDKYSKYYNLRAGKMVQ
FT                 FAIGQKVLKKNYFLSDKGKGFNAKLAPKYSEAVVKKKVGDYCYILEDLNGK
FT                 SLGMYHVSQLKKV"
XX
SQ   Sequence 6999 BP; 2567 A; 1134 C; 1381 G; 1917 T; 0 other;
     gtggcgccca acttataaac agcacgtccc acttgaatta gaaattttat tgatcaatat        60
     ttttcacccc tctttatttt gaattgaact atacattatt aggttaagat agatttagtg       120
     gattcgagca ctttaatact attttggtta aattagttta ggataagatt atttgaattg       180
     gatatacatt ttcgttcaag gaatacatta ggttaaacaa gattgaatat tcattttttc       240
     tttttattga tattattact ctattttaca atattaatca tatttatcct ttcttcatac       300
     tgcggttgag taccaatttc ctgaaaaaaa accagaaaag tataaaattt aaaatggcta       360
     catcagaagg gtcagctttg ctaataaact cgcatgattt aagtgaagat gaagtagatt       420
     atgagttgct gataagaaac cagttgtacg aagaaacaga aaaacagaaa cgggatcgtt       480
     tgagaagaat attcctagaa gaaggtaacg atactatcgt tttaacggag gacatttttt       540
     tcgttaatga attaccgtta gttacaaaaa aacttgaaga aattgaatat ggtttagcca       600
     gaactattca agttaaatgg atttcacaac ttcgtcactg gaaggaaaga gttaatagaa       660
     gcaaagttgt tgatctggct caaggagaac aaaaagtcga gattttattt agaatcaaaa       720
     atttgattaa aatttacaaa acaactgcag ttagattgat gaatctaagc gagtctgaag       780
     aggaacttgg tgattctaaa ggctcagatc gaacgcaatt taaacaggag aataaattaa       840
     caaaagctag ggcaccacgt tttgcagaaa cttcggttcg gaaagaaaat caatcatttg       900
     accacgatac cttatcaagg gcagtgaatt ctacaattgg agactatttc aaacaattcc       960
     caaatattgc aggaatgaaa attagtattg accgcgacga taaaacaaag aaaaaagtta      1020
     ttcaggaaag ggaatcgatg aggaatctag gagcggttcc caagcggttt gaaaggcttg      1080
     gctctataga aggacaggat attgaagttc acgaaattaa tgagaaacag aataggaaaa      1140
     agagcaggaa aacaaaatta cctaagaaac ctatgtcgga tgacagctcg tctttggatt      1200
     cgttgagcag tctgctatct tcagaaagta gctcggactc cggatctatt tacccgtcag      1260
     aaaggtctga tgatattgga cgtcgtgata atcgggtcca gaatcaccga cttgacaaat      1320
     ggggtatcca gttcagtgga gatatccacg gtatggatgt gtctgatttc gttttccaag      1380
     tcaacgaatt aatggatgct gaacgcattc caaacgatag atttttagat cacgcctaca      1440
     ttctttttgc tggagaagct cgtagatggt attttaccta taaaaagaag tataaaacgt      1500
     gggataaatt ttcgaaacaa ttaaaaatcc gtttcggtga cccaaataaa gacaggaaaa      1560
     ttcttcaaga catcaaggat agaaaacaaa aaaagggaga gtcgtttgtg gctttttgct      1620
     cggaaataga gggaatgttt gaaagaatga ctaaacagta ttcggagcgg aaaaggttga      1680
     aggtccttag aaacaacatg agacgctggt acaagaccaa actttcattt ttcaaaatta      1740
     aaaacattgc gcatttaagc atgctttgtc agcaattgga taaagacagt ggaagaattt      1800
     attccaaaac ctcccttccc acaagaaaac atatcagaaa tgtggatgcg tcgtctgatt      1860
     cttcttcctc gtcttctgaa caggaagtgt gcgctttcga caaaaaagaa aaccgacaac      1920
     gcagataccg tgaaccccga ccagacataa ctgaacctca aggacgagaa aatttattgc      1980
     aattgaattc tctctgctgg aattgccgaa aatatggtca tcggtggagg gattgcaaac      2040
     aacccaaggt aattttttgc cacgcatgcg gcatgcctgg agttactttc atgacctgtc      2100
     caaagagtca tacgcttcct caacaggctc caaaaaacga gagctcggag gagaagtaag      2160
     gggtgtttct tttccggaga attgtttaga ccccaagaaa gaaaacttgt taggggatca      2220
     ccattcaaac tggaaaattt atgagttgaa cattaagcca aacaaatgtc cacatgtttt      2280
     agtcaaaatt gtcgattcta atattgaagc tctgttagac tcgggagctg aaatctctgt      2340
     catgaattca atagacttag tccgtagata caattttaaa attcacaaaa caaatatcag      2400
     agtagataca gcaggaacag ctgagcatca ttgcttaggt tttgtaaatg taccattaac      2460
     gtttaatgat ttaacgagag tggttcgaat ctatattgtt ttagaatttt ccaaaccctt      2520
     aatattaggc gttaattttt ggagagcttt caatatagtt ccagcaatcg aaatgaccaa      2580
     taaagaaatc atatccatag atcgattgaa ttctcaaagt cagatacaag tttgtccaat      2640
     tcgtctgatt gaaaactatt tttcggcaga tgaatcagaa ctagcactca cattttctga      2700
     atttgtcgga gcagtacatg aacctgacag tcatagtgac gatgaagact tgtccttaga      2760
     agtacccacg ctagactttc cctccatgtc gatcgaagaa atagaaacag aacacgtact      2820
     gaatagggaa gaaagatttc aactactaga ggcaattagt tgtttcgagt tttccgaaga      2880
     tgacaaaatc ggtaggaccg cgatcttaga gcacaaaatc caaattattc caggcgccga      2940
     gataaaagct tctccgatgt accgctgctc gccatatatc cagaaatatg tggacgaaga      3000
     gttagaacgg atgaaaaaga tggatgttat tgaaccatgc gactcggatt atgcaagccc      3060
     tttgctaccg attaaaaaag ctaacggtaa attccgcgtt tgcttggatt cgcggcgggt      3120
     taatgatgtg accgaaaata acgcgtatcc aattcctaac ttacacgaag tcttacacag      3180
     aattaaaaag gccaaatact ttagtgtaat tgacctgaaa gaggcgtatt ggcaaattcc      3240
     gctggctaaa gaatctagaa aatatactgc gtttaggacg aagtcagggt tatatagatt      3300
     caaagtgatg cctttcggcc tgaaaggagc cccttttact atgtccaagc taatggattt      3360
     agtcctcgga aatgacctac aaccctacgt atgggtttat ttagatgaca tcatcctcgc      3420
     gaccgaaaca ttatcccaac atgttgcact aataaaagaa gttgctagtc gtttgaaacg      3480
     ggcaaactta acgatcagcc taaataagtc taaattttgt aggaaaagtg tcaggtatct      3540
     agggtacgtg atttctgaac aaggtatttc gattgacatg gaaaagatta aacctattct      3600
     ggactatgaa gcaccgaaaa cagtgaaaga cattagacgt ctactgggac tagctaactt      3660
     ctaccaaaag tttatcaaac attacagcga tataacctct cctatttcag atcttttaaa      3720
     gaaagacagg aaaaaatttt cttggagctc tgaagcaaac gaggcgctta acaaactgaa      3780
     acaggcactg attagtccgc caattctggc caatcctaat tttgacctag aatttaccat      3840
     agagtctgat gcgtccgatt tagcagtagg agccgtcctt actcaaaaac agcacggcga      3900
     gaagcgaatt atcgcctatt ttagtaagaa attgaattct acacggcgaa aatatgccgc      3960
     agtagaaaag gaatgtttag cagtgttgtg ggcaattgaa gcattccgca attatattga      4020
     aggaacgcat ttccgagtga ttacagatgc caggagtttg gtctggcttt caaaagtgag      4080
     cgctgagaaa ggctcggcta agttatgcag atgggcgctg aaactacagc aatttgactt      4140
     cagcattgaa tacaggaaag ggcgtgacaa catcactgca gattgtcttt cgagatcact      4200
     cagcaccatt aaagtaaaat gggaggactc tgactatagt ggaatgctta ataaaattaa      4260
     agttgatcca ttaaaataca aagattacaa aatagtggac aacgtgattt acaaattcgt      4320
     taatgatgag tcattgatta cagataggag attcacatgg aaacgaattc caacaatagc      4380
     agaaagggtt gaattaatta gggaaatcca tgaagaggct cacttaggca cagaaaaaac      4440
     actaggcaaa ataagagaca aatattattg gccgaggatg tactctgacg taaaaagatt      4500
     ttgtgagggc tgcatagcgt gtaggaaatc aaaatccgat aatgttaatc atgtgccacc      4560
     tatgggcaaa caaaagatag ctaaccagcc ctggcaaatt attgctatag attatgtggg      4620
     accttttcct cgggcaaaac ggtcgggaaa tacgtgctta ttagttataa cggacatatt      4680
     ttcaaaattc gtaattatac agcctctcaa ggaagcaaaa gcgaaacaac tttcattttt      4740
     catggaaaac atgatatttt tggtgtttgg cgttcccgaa atcgttctat cggacaatgg      4800
     ggcgcaattt acatcaaaag aatttaaaaa tttgttgcaa aaatacagtg taagtcactg      4860
     gcttacccca gtttattttc cgcaagtcaa taacgcagaa aggacaaatc gcgtaatcac      4920
     ttccgctatt agggctctca ttaaaaacga gcaaaatgaa tgggacgcga atatatataa      4980
     aattgctcat gcaatcaaca acgcaacgca ctcatcgagt aagttttctc catattttgt      5040
     gaacttcgga aggaaccaga ttagctcagg cgaggaatat cagatactta gagatctaga      5100
     acgagattta tctccggaag aacaggaaca tagcagtaag atgaaaaata ttttcgaaga      5160
     agttcgaaaa aaattaaaaa ttgcctacga taaatattct aaatactaca atctacgagc      5220
     aggtaaaatg gtgcaatttg caatagggca aaaagttcta aaaaagaatt attttctatc      5280
     agataagggc aaaggattta acgcaaaact ggcaccaaaa tattcagagg ccgtggttaa      5340
     aaaaaaagta ggagattatt gttatatttt agaagatttg aatggtaaaa gcctaggaat      5400
     gtatcatgta tctcaactga agaaagttta aaaaaataaa ataaataaac ctgtagctat      5460
     gtataaaaac taagaaatcc aaatttagaa ccatcaaaac acgcaaagtc ggtaaacaaa      5520
     taatgaaaac gttaatatag atataaaatc tagtaaatgt ttattaaaat attgtaaaaa      5580
     caatcgagta acaaaataca aacaaaaata acaaatacga aaaaacaaat aaaattaaca      5640
     gcataagata tgaatgaaat gagatcatag aaaaaaaaac aaatcctttg catttagata      5700
     attaattgaa tatgcattag aaaatttagt tataaaatta gagcgtatta ttgcaaatta      5760
     tgtttttttt tataaaagat cgagctatgt acagaaacta tgggtgaagt caaaaaaaaa      5820
     aaaaaataat aaaataaaaa aataactgca ccagaaaaat acgcaaagtc ggcataatta      5880
     acacaaaaaa aaaacaaaaa aataaaatag cacaggaaga attggaaacg aaaacaaaaa      5940
     tcaacttacc aaaaccacga aaggagacta catctcaaga aacaagtaca taattctatt      6000
     cgtcttccag tttcgtgcta aaataaaata aacacacatt agcaatagtt taaaatgtaa      6060
     ataatgtaaa tagtagtact aattaaataa gaaagctttt catctttcac gaaagagacc      6120
     aaaagattca catagaataa gaaagttggg aacactgttc catcataacg tgatagagtc      6180
     agtagtttca agaagaattt caaggtcaag gggtcatagt ggtgacttat tggactgaga      6240
     agtttataaa ttagaaaaat agaaatataa gaaatgatag aggtcttaat aaggtggatt      6300
     aattggtact tacgttttgg aaaggtagac accggtgatc ctgcaagcat gccatatata      6360
     gtttctcagc aatagcctca ataccatttc acagtttgac agaatacgca ctatgcgctc      6420
     caatttttga caatagacta tgccacagca aagttcaaca aagttctaat agcccggtat      6480
     ttcaacatta actgacgaac cgagagagat gagcgagagt taattgtgga tatttgtaga      6540
     gttttgatcg tgtccgtata ctgatacgga gtgataagta tgagttagct acattttgtt      6600
     aagacgaata tgaccgacga atagttcagg tacatttttc gataattgac atatgtggtg      6660
     gttatgagca tgagcctcgg atttcttcca ataaatgtat tggagtaagg tatcgttcga      6720
     tatcatttga aaagaattgt ttaccagtta gttaactggt gcggtttcga attaacagtc      6780
     gcgtcgtatc gctctcgggc atgttttgat ttcaagtgaa tgataaaaga aaatcgattc      6840
     ccgaaaattt gcatgaaagt agtgataagt gtaaaaagta gaatataagt ctaaaatacc      6900
     gtagaagtga tgtttttttt cggaaattgg atatatatga agaagaataa taaggtaaaa      6960
     aaaaaatatt ccatattttt tttgggtagt tgggagtga                             6999
//
ID   Gypsy-177_AA-LTR repbase;    DNA;    INV; 1969 BP.
XX
AC   supercont1.143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-177_AA_;
KW   Gypsy-177_AA-I; Gypsy-177_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1969
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.143; Positions  548935  550903.
XX
SQ   Sequence 1969 BP; 594 A; 365 C; 466 G; 544 T; 0 other;
     tgaaacgagc agatttggtg aaaatccgcc gtttcaaata agtagcgttt gctaccattg        60
     cgcctgttag ataggcaact atagatgata aagtgcttga atctattgtt tataagtgtg       120
     agttttaaga tgatgatgag agtgggtgaa gagtaatgat taacaggaaa ccccgagaaa       180
     tgaaaatcat tcgacaagaa aatttttatt agagaattta aatcaaaata gaaccggaaa       240
     ccctcgaata ttatattaat ataatcggtg acaactttct tggtcaatcg aaaccaacaa       300
     gttggtcttt cccttttgga ccgccaagta gtcaagtgct aaaaaaatct tatcaagtgc       360
     attgagaaaa ttttcttaaa aattatttta tctaaaacaa gtaaaagaag ctataaaatc       420
     aaaagaagag tgtaaatttt aacgtgataa aatttattat tattttcaga gagataattt       480
     gcaatttaat tgaaatttaa tacaaaccgt gagtcgtatg tttaaaataa ttgtagttgt       540
     atctaaattt aatatttcgt tttggacaag aagggtagga aaattaaggc agtgagtcaa       600
     agccaagaaa aaagtgagaa cagtgaagca aggaatataa ggtaatttgg tgaattgata       660
     gaaaatgtgt gtgttgggta ctaagaatct gctattacag tagccacagc ccggtggcat       720
     tctccattgg ggaattggtg tgcggtcggt gctaaaacgt gaaggtgcga gattggtggt       780
     gcgaagatta atcgatcgtt gcgacggtga aagtgaaccg atttggtggt tggtacacag       840
     cgaggttacc ctgggcatac ctatcgactc gtggtctcgt gccactatag gtacgtctag       900
     agtgcgttgg ccatcgaagt aggaagcttg gcccccccac gagaatcaca cccgctaccc       960
     gtgattgcac gctctgtggg gtcgtccatc aaagggaagg aattccagcg ccagtgtacc      1020
     cgcccgactc acgttctgaa gtccggagac tgttcggacg gtaccaaacc acctttccag      1080
     ggaggaaaat taccacctca gaaccgcgga ttgtggataa cctcacccaa gtaagagtag      1140
     tgatcaccct tcgccacctc ccgcctgcga tatccgggaa gagaaagaca aaatttctgc      1200
     agccgagcca cctcccctcg ttgttggtgt tcatcaatct cgacgtggtt ggtcgatagc      1260
     gtcgtcctcg ggaccgatgc caccccctgc tcagggttga tcgtgttagt cagcaagcga      1320
     cgctcaactg taagtacccg aatcaaactc catcaacaca caccaatcca ccgtgatttc      1380
     aagtagggaa acactatttg tagcagtagg ggaagaacac agttaggggg ttagaactac      1440
     tcacgaaaga tacacgagag gtgagtgacg tcacacatag ggagtgagtg actatcggcg      1500
     agttcggtac cgttggccag cgtttagctc cgggagaaca gccgatagcc actcagtact      1560
     tagctagctc tggtaggaga cagtgcaggg cattgtacgt gatgaaatga aaaaaaaaaa      1620
     actttaatga attttaaaac gttaaaattt tgataaaagt tttactgaat tgccttacct      1680
     agtatttttt tttttaataa aattttctct tgtctgctta actttagatt tactattttt      1740
     ttggttgatc gaaagtttca ccattctgtt agaaatttgg gaaggaattt tgggaaagtt      1800
     tttggaattc ggactgattg tttgtttgtt tgggattgga ggtggattcg gtgctaggca      1860
     ctgaaaactg ctagctgggc attacgtatc cggagttctt gacagacgac ttcgtcgtct      1920
     ggcgcataag tcaaggaagt tttagaccct agccaggatc ctccttaca                  1969
//
ID   Gypsy-178_AA-I repbase;    DNA;    INV; 7717 BP.
XX
AC   AAGE02025061;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-178_AA_;
KW   Gypsy-178_AA-LTR; Gypsy-178_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7717
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025061; Positions   60076   52360.
XX
CC   Positions [5609-6064] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3275..5605
FT                 /product="Gypsy-178_AA-I_1p"
FT                 /translation="MSVLCKKRANFDVEGRRMSQKKPSTVFVPYKPEISEL
FT                 KLDVEGDTRPFAIIDVMGVELVGLLDSGAQISILGCGSKNLLTKLKLKLLS
FT                 TETKLTTAGGSRLDVLGYVNLPVTFHGQTKIVTTLVAPAMQRRLILGMNFW
FT                 RMFNIEPTIQGQLGGIAEAMEAEVEKHDDAEILTADQQARLEEIKVKFKVF
FT                 REGDKLGVTPLISHTIEFSEEFKNAKPVRLNPYPWSPEVQKYVNEELDKWI
FT                 DSGVVERSNSDWAMLIVPVVKKNIGEDGEEAIKVRMCLDARKLNERTKRDA
FT                 YPLPHQDRILGRLGAARYLSTIDLSKAFWQVPLNPESRKYTAFRVFGRGLF
FT                 QFTRLPFGLVNSPATLSRLMDQVLGYGELEPNIFVYLDDIVVASNSFEEHI
FT                 QCLEEVARRLNDANLSINIEKSRFCVPELPYLGFILSREGVRPNPDKVEAI
FT                 VNFERPSSVRSLRRFLGMVNYYRHFVEGFSEITAPLTDLLKGKPKVITWND
FT                 QAEIAFNILKEKLICAPILANPNFDLPFKIQTDASDMAIAGILTQENEGKE
FT                 HVVAYYSRKLTTPQRSWKAAEKEGLAALEAIEKFRPYVEGTQFTLITDSSA
FT                 LSFIMNSKWKPSSKLSRWSMLLQQYDMKVQHRKGTENVVADSLSRAVEAVE
FT                 VAAQNDWYSQQYRKVEENPESFADFKIEENKLFKFVAAASDVLDYRYEWKM
FT                 YVLEGLRKSVLKEEHDDALHPGYEKTIQKLKTRYYWPKMAIDTKRYVQACD
FT                 VCKQCKPSSVSSNPPMGKQRLTDRPF"
FT   CDS           join(1383..2387,2391..3311)
FT                 /product="Gypsy-178_AA-I_2p"
FT                 /translation="MNAEFELKYQSMNVAHLLVDEVEYELKIRQVPFNVGD
FT                 SRDVKRRRLRQKLKEQKEKNNFEIVLEMSPEECKRDLNIVDEKIAKIHDQL
FT                 ENRRTRKSELPELQTRLVHLYNRLMRLKEKVDTDGLEGIALNLYQEHFTVL
FT                 TSDPDVRKRVEENLSKQLIDLSVQDRSEESTLKETEEENSSESEDRGNQNK
FT                 DKNKELSGNTSTPKERRKSKKQKDSEEMFKKLLEHVASYLESRLSSISEGR
FT                 RKGDSSCSEDVGIEEARKSRRKEFRGRNRRDSSSGEDQEDNVLRSQRRSEI
FT                 ASKKKSRREVSPPKRKSRNQRRTDYEEASNEDSSSGEESEEPHVRRRPRSV
FT                 AEWKMKYDGKDEGKKLNKFITEVEFMAEAENLGKRDLFNEAIHLFSGEART
FT                 WYIEGKKNRDFRNWRELVTELKLEFQPPDMDFHYEQQAAQRRQKRSEKFQD
FT                 YFNAVMEIFQFMAVAPSEQRMFDIVFRNLRSDYKNVLVVKGIRTLKGLKQW
FT                 GRKLDSANIWMYRNREGDAVPKNAQVHEVRRDFPRNDNRPAEKKWKSAPYN
FT                 GKSAKPDQKEGVTNISKRQEVPQDNQRPGTSKADLESRIANYRVPDRLTCF
FT                 NCRGKYHHHRTCLLEKEVFCMVCGFHNYTKEKCPFCAKNGRTST"
XX
SQ   Sequence 7717 BP; 2498 A; 1422 C; 1811 G; 1986 T; 0 other;
     cttacacgct aagatcagtc tacccaaata tgggtaaagt ttacccataa tcgctgaaaa        60
     gtgcacacac tcattttatg ggtaaagtgg actctaccca taaattggta aactcctaaa       120
     acccataaat gggtatatga ttattagcaa aaatatagga aaagtaccca tatatgagta       180
     ctttattttt ctttattttg ttgattttca atgataatac taaaataaaa gttctaatta       240
     taaatacaaa caacatgatt ttattgaaaa ttatgaatag tggggtcaaa aggatagtca       300
     aatataagat gaggtgttat tattctgcac ataaaccaac atgcgcgaac actgcttctt       360
     ccaagtattt atacgagccg ctgtattgaa catgatgctg ctgttgatcg gaaaaatctg       420
     atcccagtgg agcgatttaa aaatcacctt caaccacatt tccacatgat gaagagtttt       480
     gattccgcaa taaatgtaat ctgaaacaaa gaatagctca agtagtaatc attgttgcta       540
     tttttctgtt tttgcattat aaataataat atttacttac cttaaaatta ttaatttcaa       600
     tagtttttga acaatgctgt ttaaagacag caacgtcgcg cgattattgt tgatgtttta       660
     tttttcatcc aaatatgggt aaacgataat acccatattt gagtaaagca actttactca       720
     taatatgagt aaactttacc aattttaatt agtaaattct acccatatta taggtttaat       780
     atgaaaaact caaaaatggg taaataaact acctatttat gggtaaactg atcttagcgt       840
     gtagttagtc acaattggcg cccaactaca acacgcgaaa ggtaagctga ggatcgatta       900
     aaattagaaa aatctaacga ttttttatag gcggcaggtg agtacacaac ttgcacagtt       960
     gtgtaggatc tttgctctgt tttgcaccga ccaaaattgt tctattctct tggaaacttt      1020
     aagacattgg ccgttcgcgt ttcagtttcg cttgaaaggc aaaagaatta aaaagtgcct      1080
     agtgaatagc agttagactt gcaaacaaga ttgatcacaa aaatatttac acttaatgaa      1140
     gagtaattaa cagcaattga aaaaggtcct gaacgaaatt gaattagcca ctacactaca      1200
     caaacacttg aattacattt atttgaattt ttaccctgtt tgttagtatc taagtttatt      1260
     cgtatttatt ttgaaatttt ttgaattcgt ctactatagc tttaatctag aattagtata      1320
     tttgaatttt attctgaatt attttgtttt tacttgaatt tggttggttt ttcttgagca      1380
     acatgaatgc tgaatttgaa ctcaaatatc agtcgatgaa tgtagcccat ctactcgtag      1440
     atgaggtgga gtacgaactc aagatacgcc aggttccgtt caacgttggt gattctcgtg      1500
     atgtgaagcg tcgacgattg cgtcagaaac taaaagagca aaaggagaaa aataattttg      1560
     aaattgtttt ggaaatgtcc cctgaagagt gtaaaagaga tttgaatata gttgacgaaa      1620
     agatagcaaa aattcacgat cagttagaga ataggagaac gaggaaatca gaattgccag      1680
     agttgcaaac aaggctcgtc catttgtaca ataggttgat gagattgaag gagaaagtag      1740
     acacagatgg acttgaggga attgctctaa atctctacca agaacatttc acagttctta      1800
     catcagatcc agatgtgagg aaaagagtag aggaaaattt aagcaaacag ctaatagact      1860
     tgagcgtaca ggatagatca gaagagagta cattgaaaga aactgaagaa gaaaacagtt      1920
     cagaaagtga agatagaggt aaccagaata aggacaaaaa taaagaattg agtggtaata      1980
     ccagcactcc caaagaaaga agaaaaagta agaagcagaa agattcagaa gagatgttta      2040
     aaaagttgtt ggagcatgtg gctagctatc tggaatccag actaagcagt attagtgaag      2100
     gaagaagaaa aggagatagt tcttgtagcg aagatgtagg tattgaagaa gctaggaaaa      2160
     gtagacggaa agaatttcgt ggaaggaata gaagagatag ttcgtctggc gaggatcagg      2220
     aagataatgt tcttagaagt caacgccgtt cggaaattgc ctcaaagaaa aagagtagaa      2280
     gggaagtcag tccacctaag aggaaatcta ggaaccaacg aagaacagac tacgaggaag      2340
     caagtaacga ggatagcagt tccggagaag agagtgagga gcctcattga gtacggagac      2400
     gaccacggtc tgtggcggaa tggaaaatga agtacgatgg aaaggacgaa ggcaagaagt      2460
     tgaataaatt cataaccgaa gtagaattca tggcggaggc agaaaacttg ggaaagcggg      2520
     atctgttcaa cgaagcgatt caccttttca gcggagaggc tcggacgtgg tacatcgaag      2580
     ggaagaagaa tcgagacttc cggaattgga gagagttggt gacagaactt aaactagagt      2640
     tccaaccgcc agacatggat ttccactacg agcaacaagc ggctcaacga aggcaaaaac      2700
     gttctgaaaa gtttcaagac tatttcaacg cagtcatgga aattttccag ttcatggctg      2760
     ttgcgccgag cgaacaacga atgtttgaca tcgtcttccg gaatctgaga tccgactaca      2820
     agaacgtttt ggtggtcaaa gggatacgta cgttgaaggg tttgaagcag tggggacgaa      2880
     agctcgactc ggctaacatc tggatgtatc gtaaccgaga aggcgacgca gttcctaaaa      2940
     atgcacaagt ccatgaggtg cgtagagatt tcccccggaa tgataatagg ccggctgaga      3000
     aaaagtggaa atctgctccg tataatggaa aaagtgcgaa gcctgaccag aaggaaggcg      3060
     ttaccaacat ctcgaaaagg caagaagttc ctcaggacaa tcaacgtccg ggaacgagta      3120
     aagcggatct ggagtcgaga attgcgaact accgagttcc agacaggcta acttgtttca      3180
     actgtcgagg taaatatcac caccatcgga cttgtctgtt ggaaaaggag gtattttgta      3240
     tggtttgcgg gttccacaac tacacgaaag aaaaatgtcc gttctgtgca aaaaacgggc      3300
     gaacttcgac gtagaaggtc gtcgaatgtc gcagaaaaag ccttcaactg tttttgtgcc      3360
     gtacaaacct gaaatcagcg agttgaagtt agacgtggag ggggatactc gtccgtttgc      3420
     catcatagat gtcatgggag tagagcttgt tggtctgttg gacagtggag cgcaaatttc      3480
     aattcttggg tgtggcagca aaaatttgct aaccaagttg aaattgaagc tgttgtcaac      3540
     tgaaactaag ctcacaaccg caggaggttc acgattagac gttttggggt acgtgaacct      3600
     accagtcacg tttcacgggc aaacgaaaat tgtcaccacg ttggttgcac cagcaatgca      3660
     acgtagactg attttaggca tgaacttctg gcgaatgttc aacattgagc cgacaattca      3720
     aggacagttg ggaggaatag cagaagccat ggaggctgag gtagaaaagc atgatgatgc      3780
     ggagattctg acagcagatc agcaggcaag gttggaggag ataaaagtta aatttaaagt      3840
     tttcagagaa ggagataaac tgggagttac gccgttaatc tcccacacca tcgagttcag      3900
     tgaggagttt aaaaacgcaa aaccagtaag attgaatcca tatccctggt cgccggaagt      3960
     tcaaaaatat gtgaacgagg aactcgataa gtggattgac tctggtgtgg ttgagaggtc      4020
     aaacagcgac tgggcaatgt tgattgtgcc cgttgtgaaa aagaacattg gagaggatgg      4080
     agaagaagcg attaaggtca ggatgtgttt ggacgctagg aagttgaacg agcggacaaa      4140
     acgagatgcc tacccgttac ctcatcaaga taggatcttg ggaaggctag gggctgcaag      4200
     gtacttatct accattgacc tttccaaggc attttggcag gtaccattga acccggaatc      4260
     ccgtaaatac acagccttcc gagtgttcgg acgtggctta tttcaattta cccgtctccc      4320
     atttggcctg gtgaacagcc cagcaacgct ttcacgattg atggaccagg ttttaggcta      4380
     tggtgagcta gagccgaaca ttttcgttta tctcgacgac atagtagtcg cgagtaattc      4440
     gttcgaggaa cacattcaat gtcttgaaga ggtggcaaga aggttgaacg atgccaattt      4500
     gtcgatcaac atcgaaaagt cacgattttg cgttcctgag cttccgtatt tgggcttcat      4560
     cttgtccaga gaaggggtga ggcctaatcc ggataaagtg gaagcaatcg tgaattttga      4620
     gcgaccatcc tctgtgcgtt ctcttcgccg gtttttaggg atggtgaatt actatcgcca      4680
     ctttgttgag ggattcagcg aaattacagc accgctaacg gaccttctta aaggcaagcc      4740
     gaaggtaatt acctggaacg atcaagccga gatagcgttc aacattttga aagaaaaatt      4800
     aatttgtgct cccattttag ccaacccaaa tttcgatctt ccgtttaaaa tacagacaga      4860
     cgccagtgac atggcgatcg ctggcatttt aacccaggaa aatgagggta aagaacatgt      4920
     cgtagcttat tactcaagga agctgacgac ccctcaaagg tcctggaagg ctgctgagaa      4980
     agaaggtctc gcagctctgg aagcgatcga gaaatttcgc ccgtacgtcg aaggaaccca      5040
     gttcaccctg attacggact cgtcggccct gtcgttcatc atgaactcca agtggaagcc      5100
     atcgagcaaa ctcagccgct ggagtatgct gcttcagcaa tacgatatga aggtccagca      5160
     tcgcaaaggg acagaaaacg tcgtagcaga ctcactctca cgtgctgtag aagccgtaga      5220
     ggtcgctgcg cagaatgatt ggtactctca gcaatatcga aaggtggaag aaaatccaga      5280
     atctttcgct gattttaaaa ttgaagaaaa caaacttttc aaatttgtag cggccgcttc      5340
     tgatgtgttg gattaccgct acgagtggaa aatgtacgtg ctggaaggat tgaggaagtc      5400
     ggttcttaag gaagaacacg atgatgctct ccacccagga tacgagaaga caatccaaaa      5460
     gcttaaaact cggtactact ggccgaagat ggcaattgac accaaacgct acgtgcaggc      5520
     ttgcgatgtg tgtaagcagt gcaagccttc atcggtttca tccaacccac cgatgggaaa      5580
     acagaggttg actgatcgtc cattctagat actggccttg gatttcattc agaatctccc      5640
     gaggagtaaa aacggcaaaa cccacttatt agtcctaatg gacattttct ctaagtggac      5700
     tatgttagtt cctattcgga agattgaagc caaggcagtc tgtcaagtgg ttgaagatca      5760
     gtggtttcgg cgatatggaa cgccggaggt gattatcagc gataacgcta ccacgttcac      5820
     cgggatggaa ttccaagcgt tactgcaaaa acgaggaatt cgtcattggc cgaactcaag      5880
     acatcacagc caagcgaatc ctgtggagcg aactaaccgg acgatcaact cttgccttag      5940
     aacctacatg cagcaggatc agcgggtatg ggataccaca atccctgagg ttgaagaaat      6000
     gatcaacacc acagtgcatt cttcaacggg attctcgcca tatcgtatac tgtacgggca      6060
     tgagaaagtg gtaaaaggtg aagaacatcg gctggaaagg gatgaagggg aacgttccgt      6120
     agaagctcga gagaagtaca gacagaaagt tggaagaaac attagagaga tcgttaagaa      6180
     aaatctggag aaaagcgatg aaaaatgtag aaaagtgtac aacttacgat tcaagaagtt      6240
     tgctccaact ttcgagatcg gccagaaagt ctacaagcgg aatttccgcc aatcgtccgc      6300
     agctgagcat tacaacgcga aatatgggcc attattcact ccatgcacca taattgccaa      6360
     acgcggtagc agctcgtacg agttggcgga tgaaaacggc aaagcattgg gagtattttc      6420
     ggctagcgat cttcgcgctg gtaatgatgc tccaaaacgc gactagaatc ctaaaataag      6480
     aatactggga tttaggacca aggtcatggt ggactacggt catcatagaa ccaactcacc      6540
     gtactaccac gtgggaagtc agaccacgtg cgcagatgta ggtttaagtc atgattgtca      6600
     tcagattttg tgtcgatatc atgtagctgt ccagttagaa gtcattcatc gcaacatggt      6660
     catcgtatcg ttgctgtatg tccgataata attgtccagt ttgttttgat tctcgtccgt      6720
     gaagtcattg tcctcatacg tagtcagtct attctcgtga gtggtcttcg tcggagagaa      6780
     tttgaaatac gtcatcgtct cgtcatcatt gtttcagcag tcggtgtaag tcttagctgg      6840
     tgtagttgag agatgatgag atcctgtaaa acgagagaag agaatctaat tatagaaacc      6900
     tagaaacaca aattaaatcc ggattgacga taaggcattg ttagtgcacg aacaatagcc      6960
     gggtaacatt tatattgtac atcgcttctg atgaagcgat gacgatacga tagggtcgaa      7020
     atagggaaac attcgcctac ggtaattaat cgccacttac ctgtgtgaac caatagaaat      7080
     catccaatcg aaatgcgcta cttttcgggg ttgttccctc caaccaggtg gccaactggt      7140
     tgaacaaacc tgaaaagaaa ctgtttcgtc agcctaacat aaagatagga acggaagtaa      7200
     attcactcat cttcataaat cacgaatttc accaacaagt tgaacttcaa taacccggcc      7260
     attaaagttc aactccagac ttttgcatac acggtacgcg cgcgatagaa gacgtaggta      7320
     tactgaatcg tcttctgcta tagtagaccc gataaccaga taattcgaca aagcgatcgc      7380
     ttgatacccg aatgaagccg tttaacggcg cttggaaaaa tgaagtagta gaatatgata      7440
     agggtataca gactcacata gacactaaac agaatcactg gtggcatatt atggcaaatt      7500
     ttaaatgtaa tttagctttt aattgctcaa gattttaatg tgttcatgtg acagtctaaa      7560
     agaattgtat ttttaactgc tacgtgtctt tataatgaac gttgaatttg tgtttttaca      7620
     ggaaaatgtc ttatcgtatg tccaaagttt tagaaaattt aaggagaaat aaatgttaaa      7680
     cctcgttcaa catttatttc cccgaggtgc gggatag                               7717
//
ID   Gypsy-178_AA-LTR repbase;    DNA;    INV; 1286 BP.
XX
AC   AAGE02025061;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-178_AA_;
KW   Gypsy-178_AA-I; Gypsy-178_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1286
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025061; Positions   52359   51074.
XX
SQ   Sequence 1286 BP; 378 A; 308 C; 275 G; 325 T; 0 other;
     tgtaaccgtt tgttacaaat tgtcagtctt tttttaattc gtgctatttt ttatttgtat        60
     actgtcacgt ttctagtgtt tagtggtgtt ggatttgtat agggttagta aataaaaggt       120
     tagtaaatgt tatcaatgtc aaattgtata aaatatgatt tttagtaagt tagaagaatt       180
     gttaaatttg aattacaaat atgaaaaagt tgcatgcaag ctgtgggtac aagacaaaca       240
     taaacgacaa gtgggccagc aggcgtatta cacgcaacag atggtaacaa ccccccaacc       300
     cacaattgag gaaattgggg aggggaggaa aaacagacaa gagggtcaag ccaaattcta       360
     gaatcgccat cacttcactc tgaaaaaggc gtgcgtgtgc tcaagtgcat ttttgaaagt       420
     gtcctcaaag ttataattaa agtgagtggt aaccttacaa attgggagag aaagtgtatt       480
     tcatcaggta tgattgaacc ttaaatctat tctaatctaa tgcctataac caatggctag       540
     aaagttagta cagctagcta actactccca ttaccctcac aggacctttt ttatcttacc       600
     gtaaaaattt cgccatcttg gctggtgtgg cgtggcctac cagcagcaca cgtttcggcc       660
     tagtagacgg aagtctgcta aacctaaccc gtcaaggacc atcgctgact tctggtcatt       720
     tcggtcataa tcgtaaagga ggtccacagc tcggggtaat cacccctaac cgtataggag       780
     ctttcccctc tcggcacggt cactccggta ccgtcctggg ccgtgtcgat tgccgtcaaa       840
     gagggaggac gcctaataaa gccaaacccc tacgacacta cgtctacggt gtcgtcgtta       900
     ccacctgtgc agccgcagaa tatcccagcc tgttagcagc atcagcgagc gctcgcagga       960
     catcaggaga tcgtcggcag caaccagaag cagcaagtcg taccggtacg tgaaaaccca      1020
     ttaacaccca cacccccaca agaacaatag cttgcaataa accactagaa gataacccta      1080
     aatcccacaa tagctcagtt tgcccaataa aaccctagag attcccacca agttagaatt      1140
     ctttcattcc acacactaca atcgccctag tcaggtgacg gtacgctgca cgccttggtc      1200
     gcgtagcccc tcagcttacc cagtagcaag ccgaccctga gacccagctc gaggggtctc      1260
     ttgttactga gagattgccc ggttca                                           1286
//
ID   Gypsy-179_AA-I repbase;    DNA;    INV; 6319 BP.
XX
AC   supercont1.143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-179_AA_;
KW   Gypsy-179_AA-LTR; Gypsy-179_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.143; Positions 1046392 1040074.
XX
CC   Positions [3474-4049] - Reverse transcriptase
CC   Positions [5236-5697] - Integrase core
CC   'GGCCT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5062..6219
FT                 /product="Gypsy-179_AA-I_1p"
FT                 /translation="MLQLAHEGHPGQSLMKRRLRERCWWPGIDQSAVDTCE
FT                 SCEGCRLVQLPDPPEPMMRRQLPDRPWVDIAIDFLGPMPSAEYILVVIDYY
FT                 SRYMELEVMSKITAQETIRRLRRIFRIWGPPRTITLDNAKQFVSCEFEEFC
FT                 KANGIHLNHTSPYWPQANGEVERQNRSLLKRMKIANALYDDWKAELNSYLE
FT                 LYNNTPHTVTGKAPSELLQNRKLRTKLPCIDDLQTMPPSSDFRDQDHERKI
FT                 MGKRWEDVKRRAKPSTISIGDTVLMKNLCPTNKLSTNFHKEKFLVVNRQGS
FT                 NVIVQSMETGKTYDRNTSHLKTVSDPVPITVNDPDTNLDDRSLPTTCVDPN
FT                 IDEESHDGAVVSHSVPEPCESLLPSVQLRRSARTPKPKEIYSP"
FT   CDS           join(1848..2789,2793..4631)
FT                 /product="Gypsy-179_AA-I_2p"
FT                 /translation="MDDPNQTERDVSNGSNGPIIQQHLSPFSPASYNLPHF
FT                 KFKHLPQSEVRNAWGSWIRWFETVMAASNITDGPSRKMQLLAMGGLELQSA
FT                 FYGIPGCDEQDDPLQDPYMSMKDKLSQYFSPKHHDSFERFLFWSMAPSDAE
FT                 SIEKFALRVQQRAEKCSFGMTATESRQIAVIDKIIQYASGDLRQKLLEKEH
FT                 ITLDEAIKIINAYQSVRYQSSKMNPKPIGSLANRPYEQIDRVNRLYESSAK
FT                 KYGANPRCLRCGYTRHREAVHCPALNKTCLRCKKIGHFQTVCKTKSSFNSV
FT                 GIFILITSKENFKVVIPSPHIYGTFDRKRKATIVNSQGPSHQSKYPRSYSR
FT                 PVYQIDDQQNKEPKREEFPVYNVGESDELITCCIGGVDVTMLIDSRSKHNL
FT                 IDDTTWEIMKLQDVNIRNERFDHDKRFLAYGRVPLNLITVFDADLEINDGG
FT                 KLLKTSASFYVIEKGQQPLLGKITAQHIGVLQIGLPSSKDALISRVDTMKE
FT                 PFPKMKGITLSLPIDRSVSPVIQPLRRCPIPLLQQVEAKLKELLQLDIIEK
FT                 VTQPTSWVSPLVPIMKDNGELRLCVDMRRANQAIQRLNHPLPVFDDMLPKF
FT                 RDAKLFTTLNIRQAFHQVELSEDSRDVTTFITNWGLYRYKRLLFGVNCAPE
FT                 LFQNLMESILAECKNTVVFIDDILIFGSTEEEHDLAVKHTLSVLNRYGILL
FT                 NIHKCKFKQTEISFLGHRLSPEGVAPADEKVQAILHFRAPQTKEELRSFLG
FT                 LVTYVSRFIPNLATVNYPLRKLLKLETPFDWKQEHQESFDQLKRIIGSIQH
FT                 LGYYDPKDRTLLITDASGVGLGAVLLQFKNNQPRVIGYASKSLSETEKKYP
FT                 PIEKEALGIVWGVERFRMYLLGIHFELETDHRPLETLFTANSRPTARIERW
FT                 MLRIQAFKFKVRVCLDLKHLCIV"
XX
SQ   Sequence 6319 BP; 2036 A; 1141 C; 1440 G; 1702 T; 0 other;
     agatggcgaa aaagatggga tctggtgcag tgttgataat ttaaatttat ttacagaagc        60
     gatttgcgag tgatttgagt gatttttatt ccaagtttca attaaccaag gtaaaaaaaa       120
     gagagaagaa ataagcgtga tcatgtcaga atctacatag gatacattgt ttggtttggc       180
     ttggactgaa attctcatta atcgtgagtt aaagtgaata aaattaaaat aaaacgaaaa       240
     gcagttctga agaaaagaaa aaaaaataca aggctgtggc tgatagcgtc gggaaaaagc       300
     tgattcattg aatttgttcg aaattgaaat gacgccaagt ccgccatgtt ggaaaaatgc       360
     tgaaaaaagt gaaccgagcc tccgcgtgtt aatgcatgta aaaaaaaaaa atcagactag       420
     cactgatagc atcctggtgt gtgttgagtc gctaaaggaa taatggctgg gtagatgttg       480
     gtggtgaata acctttatcg tgaaataatg ctacatcttg gactgtattg gcatcggtag       540
     tgtttggtgt gtgtggcagt attatttacg gcatgattgt ttgcaagttt aatctacgtg       600
     tgcgggaaag gtgaggtcag aagagtgaga aaaatggaag tgagattttg gaatgtttgg       660
     tgtgaagatg agttgtttgc ttctgtacag ctaaggaatg tgttaaattg tggtaagtca       720
     aaagtaatac catatataat gcgtgcaaat ctgcaaagaa atcagtcagc atgaccaagg       780
     taggtaccct ttatccgaaa aatggctgag acatatcaat taatagcaac atgggagaac       840
     agaaaaagtg aggttatgtt ttgtcgtgtg atttgggttg taaaaacata ttgagatggt       900
     atatgtaata tgatgttgaa gctaccaaca caaaactgat tgtgtggaac agcagtaaat       960
     tcacttacgc tggttagcac cagctataaa aagaaaagtt ggcaaataaa ttcaagtgca      1020
     ttggttagca ccagctttta aaagatatgt tggaagtaac actaacggag gaaaattggt      1080
     ttgaatagat caaagctttt ggaatgttgc gaggatctat tgagggaata catcgaaaat      1140
     aactatgaaa ttcttgattg actttgcaca cggttttgaa tgttgaacta ttgtcattgt      1200
     gattattgaa ggtcgctctt agatgatgcg aatgtttgtt taaatgaaga aaaaaaatgt      1260
     aaataatggt cgtgattgac acgaatgaat gatgtgcgtt attgaatgat acgtatgttg      1320
     caaaatcaat ttaatttaga gaatgtcgct cttggatgat gcggatgatg tgcgctcttg      1380
     gatgatgcgg gagttacatg gaataaaaag tgagcacgtc actcttgaat gatgtgaatg      1440
     aatgatgtgc gctataagat gatacaaaag ttaaataaaa ctaatgttta ttaaaatctg      1500
     gctcttggat gatgcgaata tatgttgtgt gctcttggat gatgcgaaac tgatatgaaa      1560
     taaccaataa agaatgtttt gagaacattg ctcttggatg atgcgaaaga tacacaaaat      1620
     aaaaataaaa agttataaaa agttgtacat tggtcttaga tgacacaaaa aaaagtaatg      1680
     atgtgcgctc ttcgatgttg cgtatgatag taaatactaa attctcgact attgtatgaa      1740
     aatgtaacca aatggtacta ttagattctg acatgaggct tcgagtgaca caaatctgag      1800
     caagtgttgt aaacattatt gaaaaattgt tcacagcttt cgtcaccatg gatgatccga      1860
     atcaaactga gagggatgtc tcgaatggtt caaatgggcc gataatccag caacatttat      1920
     ccccgttcag tccggcatcg tacaatcttc cacacttcaa atttaaacat ttaccgcaat      1980
     cagaagtacg caatgcttgg ggatcatgga ttaggtggtt cgaaaccgtt atggcagctt      2040
     cgaacatcac ggatggccca agccgtaaaa tgcaattgct tgctatgggc ggcttagaat      2100
     tgcagagtgc tttctatggg attcctgggt gtgacgaaca agatgatcca ttgcaagatc      2160
     cgtacatgtc aatgaaagat aaattgagcc aatatttctc tccaaaacac cacgacagct      2220
     ttgaaaggtt tcttttttgg tcaatggcac ccagtgacgc cgaatccatt gaaaaatttg      2280
     ctctcagagt ccagcagagg gctgaaaagt gctcgtttgg aatgaccgca actgagagta      2340
     gacaaattgc ggtaatcgat aaaatcatac aatatgcctc cggagacctg cgtcaaaaat      2400
     tactggaaaa agaacacata actctcgatg aagcaatcaa aataatcaac gcgtaccaat      2460
     ctgttagata ccaatcgtcg aaaatgaacc caaaaccgat cggaagtcta gccaatcgcc      2520
     cctatgagca aatcgatagg gtcaatcgac tttacgaaag ttcagccaaa aagtacgggg      2580
     caaatccaag gtgcctgcgt tgtggataca ctcgacatag agaagctgtc cattgtccgg      2640
     cattgaataa aacgtgcctg cggtgcaaga aaattggaca ttttcaaacg gtttgcaaaa      2700
     ctaaaagctc atttaacagt gtaggtattt ttatattgat aacaagcaag gaaaatttta      2760
     aagttgttat accttcacct catatttatt agggaacatt cgatcgaaag cgaaaagcta      2820
     ctattgtgaa tagtcaaggc ccctctcatc aatctaagta tcctcgatcc tactctcgac      2880
     cagtgtacca aatcgatgat cagcaaaata aggaaccaaa acgtgaagag tttccggtat      2940
     acaatgttgg agaatccgat gagttgataa cgtgttgtat tgggggagtt gatgttacca      3000
     tgctcattga ttcgagatct aagcataatt tgatcgacga cacaacatgg gaaataatga      3060
     agctgcaaga cgtcaacatc cgaaatgaaa gatttgatca cgataaacgg tttttggctt      3120
     atgggcgtgt tccattgaac ctaatcactg tttttgatgc tgatctggaa atcaacgatg      3180
     gcgggaagct tttgaaaacg agtgcctctt tttacgtgat cgaaaaaggc cagcaaccct      3240
     tgctgggtaa gataaccgct caacatattg gagtactaca aattggtttg cctagttcga      3300
     aagatgcgtt gatctccaga gtcgacacga tgaaagaacc attccctaag atgaaaggaa      3360
     taacgctaag tttgccaatc gatagatcag tttcgcctgt tatccaacct ctccgtcgct      3420
     gccctatacc actgctgcag caagttgaag ctaagctgaa agagttgtta cagttggata      3480
     taatagagaa ggttacccaa ccgacgtcat gggtatcacc gttggttcca atcatgaagg      3540
     acaacggtga gctaaggctc tgtgtagata tgcgaagagc caatcaggct atccaaaggc      3600
     tcaaccatcc cttgccggtc tttgacgaca tgttgccgaa atttcgagat gcgaaacttt      3660
     tcacgacgtt aaacattaga caagcttttc accaagtgga attgtcggag gatagtcgtg      3720
     atgtaaccac gtttattaca aattggggtt tgtatcgtta caaacgactt ctctttgggg      3780
     taaactgtgc cccggaactg ttccaaaatc tgatggaaag cattcttgca gagtgtaaaa      3840
     acacagtagt atttatcgat gacatcctga tttttgggtc cacggaggaa gaacacgatt      3900
     tggcagtgaa acatacattg agcgttttga accggtatgg tattctattg aatatccaca      3960
     agtgcaagtt caagcaaacg gagatttctt tcttgggtca tagactttca ccagagggag      4020
     tggcaccggc ggatgaaaaa gttcaggcta tactacactt cagagctcca caaacaaaag      4080
     aagagctgag gagctttctc ggcttagtga catacgtgtc gcgtttcatt ccgaatttgg      4140
     caactgtgaa ctatccttta cggaagttac tcaagctgga gaccccgttt gattggaagc      4200
     aagagcatca ggagtcattc gatcaactta agcgaataat aggatctatc cagcacttag      4260
     ggtattacga ccctaaagat cgaacattac taatcaccga tgcatcagga gtagggctag      4320
     gcgctgtatt attgcagttt aagaacaatc agcctagggt tattggatat gcctcaaaaa      4380
     gcctctcaga aaccgagaaa aagtacccgc cgatcgaaaa ggaagctctt ggaattgtgt      4440
     ggggagtcga gcgcttcaga atgtatcttc ttggaataca ttttgagctg gagacagacc      4500
     atagaccgtt ggaaactctt tttacggcga attcaagacc aacggcaaga attgagcgtt      4560
     ggatgctgag aattcaagca ttcaagttca aagtaagggt ttgcttagat ttaaaacatt      4620
     tgtgtatagt atagaatctt attctgataa ttgttcacag gttgtttatc gtaaaggttc      4680
     tgctaactta gcagatacat tttctagact tggagctcac gtccctgata ctcattggac      4740
     ggaagaatgt gacgttttca ttcggcgtgt cttagcggaa tcgttgtcca ccttggtaaa      4800
     acctttgaat caagatgatt tcgatccaga agctgaaatc tttattcgaa ctatccaaga      4860
     ggctgctgca gtagatatcg aagaagttat tcaggctaca gcatcggatc aggagatgca      4920
     aaagcttaga gcatgtatcg taaacgattc atggaataat gaagatttaa aacagtataa      4980
     tccgtttcgt aacgaattta catatgtgaa ttcactcatc ttgcgtggat ccaagctata      5040
     ccgaaaagcc tgcggtctag aatgctgcag ctagcacatg aggggcatcc tggacagtcc      5100
     ctgatgaagc gtcgtttgcg agaaagatgc tggtggcctg gtatagatca atctgcagta      5160
     gatacatgtg aatcatgcga gggttgtcgc ttggttcagc ttcccgatcc accagagccg      5220
     atgatgcgac gtcaattgcc cgaccgtccg tgggttgata tagcgataga tttcctggga      5280
     ccaatgccat ccgctgaata tattctggta gtcatcgatt attacagtcg ttacatggaa      5340
     ctagaggtga tgagtaaaat aacagcacag gagactatca gacgcttaag acgtattttt      5400
     cggatctggg ggccacctag aacaatcacg ctagacaatg caaaacaatt tgtatcttgc      5460
     gaatttgaag agttttgcaa agcaaatggc attcatctca accatacgtc accgtactgg      5520
     ccccaggcca atggggaagt tgaacgccag aacaggtcgc tgttgaaaag aatgaaaatt      5580
     gcgaatgcat tgtacgatga ttggaaagcg gaactcaaca gttatctaga actgtacaac      5640
     aacactccgc atacagttac tggtaaagcc cctagtgagc ttctgcagaa tcggaaatta      5700
     cgcaccaaac ttccttgtat cgacgatctt cagaccatgc ctcctagtag tgactttaga      5760
     gatcaggatc atgagagaaa aattatggga aaacggtggg aggatgtgaa gcgcagagca      5820
     aaaccgagca ctatctcgat tggcgacaca gttctcatga aaaacctttg tcctacgaac      5880
     aagctgtcga ccaatttcca taaggagaaa ttcttggttg tgaacagaca aggatccaac      5940
     gtaatcgttc aatctatgga aactggtaaa acatacgatc gaaacacatc tcacttgaaa      6000
     acggtctctg atccagtgcc aataacggtc aatgacccgg acacgaattt ggatgatcgg      6060
     tcattgccca ccacatgcgt tgatccaaat atcgatgaag aatcacatga cggtgctgta      6120
     gtctcacatt cggtaccgga accatgtgaa tcgttgctgc cttcagtaca actgcgacgg      6180
     tcggcacgaa cacccaagcc gaaggaaata tacagcccat gaagctaagt atccacatgt      6240
     attaacgttt tactatttaa tgtaataaaa caaaactatc attaacgaaa taaaataaat      6300
     tatttgaaag aaaagggga                                                   6319
//
ID   Gypsy-179_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   supercont1.143;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-179_AA_;
KW   Gypsy-179_AA-I; Gypsy-179_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.143; Positions 1040073 1039911.
XX
SQ   Sequence 163 BP; 40 A; 34 C; 37 G; 52 T; 0 other;
     tgtgataatg tggctaagac tgttgtatat ctctgtatgc gtgaggctca tataagcttg        60
     accataccta cttcatagga gaggcgagta gtcttactcg gtccaccatc gtgcataggt       120
     cacattgcgt atcggtctat ttcactgtaa gttagttacc aca                         163
//
ID   Gypsy-17_AA-I repbase;    DNA;    INV; 4270 BP.
XX
AC   supercont1.336;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_AA_;
KW   Gypsy-17_AA-LTR; Gypsy-17_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4270
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.336; Positions  894906  890637.
XX
CC   'ATATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..4112
FT                 /product="Gypsy-17_AA-I_1p"
FT                 /translation="MTKTKSKSSESPVVRTPEFKALMPPSLPPPPPLQTAG
FT                 SLHANWMRFKQAFVFWMKGAGHERHDDDVKIAILLSVVGPEGLEIFNILPL
FT                 TAAEKEDFDDVMEAFDTYCGQKKNVIFERFVFTHRQQREGEKFDDFLRDIT
FT                 TLVQTCEYGNLRDSLVRDQIVFGLHDRTFSDKLMGKEAKELTLEKVIEACK
FT                 IEEQRREQLKVMSHGDPGPSGRVDQISRKGSAAGKGMSKSSSERQNRPKPN
FT                 SSHKSTNQNSNTNTKKIVKSNTKANVSNCSYCGYDHVKGKCPAFGKTCSAC
FT                 GRQNHFSTVCRNRSQTKHAGELSVCYMDVLESAIGSPWCEVIRIDNMDVSC
FT                 KLDTGADVNVLPARVLSEIGVTELEDVSIVLQGFGTSSKIKPLGKKTLKVV
FT                 SRGVLHDLDFVIVDLDVNPILGLKSCVDLGLINRVFDIRSNNTNQQFVEKY
FT                 SDVFTGIGCFKEQHRLKIDPRATPSANPPRRVAFALLDKLKSELGRLCEDE
FT                 IISPVNEPTEWISNLTIVEKPDKSLRLCLDPRELNKVLLKEPYLIPTIDDL
FT                 RHKLANKKIFSVLDLKDGFFQIKLDKKSSFLCSFNTPFGVYRYNRLPFGLS
FT                 ISPEVFQKFNEENFADIDGVFVYIDDLLIFADSVEEHDRIMEKVMERARER
FT                 NIKFNPRKLQYRVEQVSYLGHEISRNGFRPDQGRLDDLQEIKAPSNKVELQ
FT                 KILGMINYIRTFIPNLAEFSKPLRDLLKKNCIFTWTKAQEDCLEHIKTLIK
FT                 NSPHLSAFNDKKPIKLQCDASQFGLGACLLQDGKPVAFSSRSLNDAEQRYA
FT                 QIEKEMLSIVFACKKFHNYVYGRQFLVETDHKPLVAIMEKPLCGIPSARLQ
FT                 RLRIKLLPYALTLKYLPGKYMYIADVLSRFSRRTIGPDDVEEDLTEYVHTI
FT                 NISDNRKQQFVVATKNDPVLSDFLKIYHNGWPNDKKSLHENLRFLWKFKHD
FT                 LHVEDDIVFMKDKIYVPTGLRRTVLDWLHVGHFGIEKSKARARELFFWPGL
FT                 ATDVEDKVGGCKICLKFSKQNVKEPLMKHEIPELPFVKLGMDILDFEGKPY
FT                 LVAVDYFSKWLEIIRLTSKTTSAIIDRLIDLFATHGHPRMIIADNMPFGSK
FT                 EFRNFASEFEFNLITSSPHYPKSNGLAEKFVHIAKNILHKSKESNVDFRKA
FT                 LLEYRNTPLKDLKISPAELLMSRKCNTYLPASNTLLVPKINNCVRELQDRH
FT                 SSKQKQYYDRNSKCRGDLAVGDKVVYLDKNGKWLEAIVTSLADTPRSYWIR
FT                 NSDGSVYRRNKHHLKKITDRHTHNPDLLSDRSKTDQNPLNNDKQSSSKVKT
FT                 RFDGSHSGSDRELRRSERLKAKHQ"
XX
SQ   Sequence 4270 BP; 1348 A; 794 C; 954 G; 1174 T; 0 other;
     tggcgctgta gcaaaaccgc cattgaaaag tgattgtgat cttcttagtg cgtgcatggt        60
     gatcaccttc gtcaatataa ggtgaaaagt gatttctaag cagtatgact aaaactaaat       120
     cgaaatcatc ggagtcacca gtagtgcgca ctccagaatt caaagcgtta atgccaccgt       180
     cgctaccgcc gccgccgcca ttacaaacgg caggtagcct acatgctaac tggatgaggt       240
     tcaagcaagc tttcgtgttc tggatgaagg gagccggcca tgaacgccac gatgacgacg       300
     taaaaatcgc aatattactg tcggtcgttg gtccggaggg attggagatt ttcaacattc       360
     taccgttaac agcagccgaa aaagaggact ttgatgatgt catggaggct ttcgatacct       420
     attgcggcca gaagaagaat gtgatcttcg agcgatttgt cttcacacat cgtcagcaac       480
     gtgagggcga gaaatttgac gattttctgc gggatattac gaccctagtg cagacgtgcg       540
     aatatgggaa tttacgagat agtttggtac gagatcaaat tgtcttcgga ttgcacgacc       600
     ggacgttttc cgacaagctt atggggaaag aggctaagga gctgacattg gagaaggtta       660
     tcgaagcatg caaaattgag gaacaaagga gggagcaatt gaaggttatg agtcacggcg       720
     atccgggacc gtcagggcgt gtggaccaga tcagcagaaa ggggagtgca gcgggcaaag       780
     ggatgagtaa aagtagctct gagcggcaaa atcggccaaa accgaatagc tcacacaaat       840
     ctactaacca aaattctaac actaacacga aaaagattgt caagtccaac actaaagcta       900
     atgtctctaa ttgcagctat tgtggctacg atcacgtgaa aggcaaatgt ccagcatttg       960
     ggaagacttg ctcggcctgt ggtcggcaga accattttag tactgtctgt cgaaatcgtt      1020
     ctcagacgaa acatgctgga gaattgtctg tttgctatat ggatgtgcta gaatctgcca      1080
     ttgggtctcc ctggtgtgag gtgattagga tcgacaatat ggatgtgtca tgcaagcttg      1140
     acacgggcgc ggacgttaat gtgcttccgg cacgagtttt atcggagatt ggagtgaccg      1200
     aactggaaga tgtctctatt gtgctccaag gattcgggac gtcgtctaaa atcaagccgc      1260
     tcggtaagaa aacactcaaa gtggtgtccc gtggcgtttt gcatgatctg gattttgtga      1320
     ttgtcgatct agatgtaaat cctatactgg gcttgaaaag ttgcgtagac ctcggactaa      1380
     taaatcgtgt tttcgatatt cgatcgaata acactaatca gcaatttgtt gaaaagtact      1440
     cagatgtttt tactggtatt gggtgcttca aagagcagca ccgtttgaaa atagatcccc      1500
     gagccacccc ttccgcaaac ccaccccgtc gtgttgcttt tgctttgtta gataaactga      1560
     aaagtgagct aggtcgttta tgcgaagatg agattatttc gccggtcaat gagcctacag      1620
     aatggatatc taatctgaca attgttgaaa aaccggataa atcgttgagg ttatgcttgg      1680
     atccacgtga attgaataaa gttcttttga aggaacctta tttgattcca accattgatg      1740
     atttgcgaca taaattggcc aacaagaaaa tattttctgt gcttgatttg aaagatggat      1800
     tcttccaaat caagttggat aaaaaatcaa gttttttgtg ctctttcaac acacctttcg      1860
     gagtatatcg ctacaatcga ttgccattcg gattatcgat ttcccctgaa gtttttcaaa      1920
     aattcaatga agagaatttc gcggatattg acggtgtgtt tgtctacata gacgatcttt      1980
     tgatttttgc cgatagcgta gaagagcatg atcggattat ggagaaggtg atggaaagag      2040
     cacgcgagag gaacatcaaa ttcaatccca ggaaactgca gtaccgcgtg gaacaagttt      2100
     cctacttagg ccatgagatc tcgcgaaatg ggttcagacc agatcaaggt cgactcgatg      2160
     atcttcagga aataaaagca ccatcaaaca aagttgaatt gcaaaagatt ttgggtatga      2220
     tcaattacat tagaacgttc attccaaatt tggcggaatt ttcaaagcca ctaagagatt      2280
     tgctcaagaa gaattgcatt ttcacttgga caaaggctca agaggattgt ctggagcata      2340
     ttaaaacact cattaagaac tctcctcatc tgtcggcgtt taatgataaa aaaccaatca      2400
     aactacaatg tgatgcatct caatttggat tgggggcatg tcttttacag gatggaaaac      2460
     ctgtggcgtt ctcctctcgt agtttgaatg acgcggaaca acggtacgca caaattgaaa      2520
     aagagatgct ttcaattgtg tttgcttgca aaaaatttca caactatgtt tatggtcgcc      2580
     agtttttggt ggaaacggac cataaaccgt tagttgccat catggaaaaa ccgttgtgtg      2640
     gaataccttc agctaggctg cagcggcttc gtatcaaatt acttccatac gcactaacgc      2700
     tgaagtactt acctgggaaa tacatgtaca tcgccgatgt gctgtcacgt ttctctagaa      2760
     gaacaatagg tccagacgat gtcgaagagg acctgacgga atacgtacac acaattaaca      2820
     ttagtgacaa tcgcaaacaa caatttgttg tcgctacgaa aaatgatcct gttctgagtg      2880
     actttttgaa aatttaccac aacggctggc cgaatgataa gaaatccctt cacgaaaatc      2940
     tcagattcct ttggaaattt aagcatgact tacatgttga agacgatatt gtgtttatga      3000
     aggacaaaat ttatgtaccg acaggccttc gtcggactgt cttggattgg ctccacgttg      3060
     gccatttcgg aattgaaaag tccaaagcga gagccaggga attgtttttc tggccaggtt      3120
     tggctaccga tgttgaagac aaagttggtg gatgtaaaat atgtcttaaa ttttctaagc      3180
     aaaatgtgaa ggagccattg atgaaacatg aaataccaga attgccattc gttaaactgg      3240
     gaatggatat tctagacttt gaaggaaaac cctatttggt cgcagtagat tatttttcta      3300
     agtggctgga aataattagg ctgactagca aaacaacatc agcaataata gacagattaa      3360
     ttgatctgtt tgctactcac ggacatccaa ggatgataat tgcagataat atgccatttg      3420
     gttctaagga atttagaaac tttgctagcg aatttgaatt taatttaata acatctagtc      3480
     cgcattaccc aaaatcaaat gggcttgccg aaaagtttgt ccacattgct aaaaatattc      3540
     ttcacaaatc aaaagaatca aacgtcgatt ttcgaaaagc gttattagaa tatcgtaata      3600
     cacctctaaa ggatttgaaa atttcccctg ctgagttact gatgagtaga aaatgcaata      3660
     catacttgcc tgcctctaat acattgctag tacccaaaat caataactgt gttagagaac      3720
     tgcaagatag gcactcttca aaacaaaagc aatactatga tagaaatagc aaatgtagag      3780
     gtgatcttgc ggtgggagat aaggtggttt atttagataa aaacggaaaa tggctcgaag      3840
     caatagttac gtcactggct gatacaccaa gatcctattg gatacgcaac tctgatggtt      3900
     cagtgtatag gaggaataaa catcacctga aaaaaattac tgatcgtcac acgcataatc      3960
     cagatctttt atcggatcgc tcaaaaactg atcaaaatcc tttgaataac gataagcagt      4020
     cttcgagtaa agtcaaaaca agattcgatg gttctcactc tggaagtgat cgcgaactta      4080
     ggagaagtga aaggttgaaa gctaaacacc agtgagatct aaaacagaat tctttttatt      4140
     ttacccaaat tgaattggaa ataattactt taaaaattta catcttctct aaacaaaaat      4200
     ttctagatta aaactgtaaa tagtaggtta atttaaataa taaataagta tcctttcttt      4260
     gaggggaaga                                                             4270
//
ID   Gypsy-17_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   supercont1.336;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_AA_;
KW   Gypsy-17_AA-I; Gypsy-17_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.336; Positions  890636  890423.
XX
SQ   Sequence 214 BP; 80 A; 38 C; 33 G; 63 T; 0 other;
     tgtaatatac gaagtatcca caattgctgc ataggaatat cttgcataca agaaggaagt        60
     ttttatgaat atggcaataa agcactgaac tgaaattgta tactaacact tactaattaa       120
     tgatgagctc atctacaata tgaacaataa actgacttga attacggccg gctaactgat       180
     cagacgtttt atattgatcc tcccaaatat caca                                   214
//
ID   Gypsy-17_AnFu-I repbase;    DNA;    INV; 5031 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5031
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2902-2902 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           989..1927
FT                 /product="Gypsy-17_AnFu-I_1p"
FT                 /translation="MSKEEANKNPSAQGSGSKTRSSGQTAPSTSTEKSSVP
FT                 PVPPPAIEKVSIKLPSFWEDSPAAWFAAAEAEFEIAGITKERTRYSYLVSS
FT                 LPKDVLRKVMDIITTPHREEPYSTLKTQLLERLSISEEQRLSQLLYHVEMG
FT                 DRSPSDFYRHMVHLAGDSENLSAELIRKLWLTRLPKTIEVSLIAIGTRDIN
FT                 ELLKIADRLWEVTQAGHVTVLENNTIQPKVTGPDSTESLKQEIGELKEMVK
FT                 KLALRAEENSRGRQRSRTRHNGNFRSRTPSSGRQRSFCWFHDRYGINARKC
FT                 IQPCQFERSQSSMNNDEHKKN"
FT   CDS           1921..4977
FT                 /product="Gypsy-17_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKLICSAVPADGQRAIINSSPRLFIDDEISRFLFLID
FT                 TGADVSVIPSSLIGKFAKPTDQVLSAANGTVIHIYGTKLLTVSLGLRRVFT
FT                 HPFYIASVDRPIIGADFLKKHGLLVDLKSRRLIDPMTNQTSKATIAIVNTP
FT                 TPKHFVMEKNIFGDIIQQFPSLTDPPNYNAPVRHSVRHYIQTKGPLPFSKP
FT                 RRLDPEKHKIAQAEFQHMLDLGICRVSSSPVSSPLHMVQKADRDWRPCGDY
FT                 RRLNAITVPDRYPVPHVQDFTMNLQGCTIFSKLDIIRAYHLIPMAEEDIPK
FT                 TAITTPFGLFEFLRMPFGLRNASQTFQRFMNNIFRDLSFVFIYIDDILIAS
FT                 STKEQHSEHLHEVLKRLADHDVKIKLSKCVFGVPTIDFLSHTISAKGIIPK
FT                 ADKVEAIKNFPSPTSVKQLQRIVGMVNYYHRFLPQISSHLKPLYELIAEHG
FT                 NRKTKKEFIWSEKCERALQQVKDQLSNATILAHPIPDATYSLTTDASSFAV
FT                 GAVLQQRNQGSWEPLAFFSKTMTPTEQRYSTFDRELLAIVLGIKHFRHFLE
FT                 GRSFTVFTDHKPLTTALTSKSEKSPRQNRHLEFISQFTSDIQFIAGDSNTV
FT                 ADALSRIGETEAITHLSYETMSKRQHSDKQLEQLLNEAAKPDSKFKLERLT
FT                 LDNNSLVFESSTGKNRLYVPHCLRKQIFDNFHSLSHPGIRASRKLLAERFF
FT                 WPAMNKDVANYTRSCLGCQRSKIIRHTRSPTDNIPVPQGRFDHIHMDIVGP
FT                 LPPSEEHTYLLTIVDRFTRWPECFPIKDISANTIAKTFVNQYVSRFGCPLV
FT                 ITTDRGRQFESRLFAELTKLLGTHHIKTTAYHPQANGMVERFHRHLKNSLK
FT                 ACDDPTHWIKHLPLILLGIRVAYKNDLKGSSAEMVYGQSLRLPSEVFLPSD
FT                 QNVSDSTDDFIIQLKNSLKSVKPTPTRTNNSKQNFIPNLLETCCKVFVRVD
FT                 KVKTGLQAPYEGPYDVVRRCRKFYIINIKGKNESIAIDRLKPAFQTEISET
FT                 KPYRPKKQVHFKV"
XX
SQ   Sequence 5031 BP; 1539 A; 1200 C; 995 G; 1297 T; 0 other;
     attggtgacc ccgacgtgat cgtgcgtgca taccgaagta ataagtgcgt atactaacgc        60
     gaccgagtgt atatcccggt gtaatcaccc acgctgtgcg tactcacttc tgccatccaa       120
     cgtgaacttc gatgtgatat ctatgttgtt tcgactttac cgtcgaggta tgatatcaaa       180
     gcaatctcga agtgttcatc aatgcgaaat cgaagtgata catacgcata accgacatta       240
     ctaaaagtgc taaagtcgtc tcgaaaaata cgattcacac atctacgcgt gaggtttttc       300
     gtgcatcaaa tcgtgtaaga aatcacgctg gttgaaaact tttgcgcata ataaaagtta       360
     cagtgatttt aagacatacg cgatttgtga cgccaacttc gagttagtgg aaaaaccaga       420
     acattccata gtgcgcgacg tggtgatccc tgttaaccac acacacatac acccactagg       480
     gtagtaccgt gcataatcga cgcacgtttt tcgaaccacg tttgtgaagt tattttgcga       540
     atcgccgcat catcgtgcag ttccgcatcc cgtttccgga ccaatacccg cttcagcaac       600
     gttgcccgct tacgcagccg taccgcgaag gtattccgct ctcgaagctg cgccctgaag       660
     cttacgcagc cgtaccgtga aggtatcccg ctttcgaagc tgtaccgtga gaattacgca       720
     gccgtgccgt gaaggtatcc cgttttcaaa gcagcgccgt ggacgtttcc tgttacgcag       780
     tcgcatcggg agagtatcct gccatcgcat ttacttcagc tgttcagctc ctacatcttt       840
     ccatcgacac tgttcgtgca cgcagcaaca attgtcttca cattggtgag ctcgttccat       900
     accttttttg tgtatttgcg taaatagaaa atagtaggaa aacacgacca gggaaacaca       960
     gtaggcatca gaagaaaagc taggaaaaat gtcgaaagaa gaagcgaaca aaaatccttc      1020
     cgcgcagggt agcggtagca agactcgttc gtcgggtcaa acagcccctt ctacttctac      1080
     cgaaaaatcc tcggttccac cggtacctcc tccggctatt gaaaaagtgt cgataaagct      1140
     tccgtcgttc tgggaagact cgcctgccgc gtggtttgcc gcagcagagg ccgagtttga      1200
     aattgcggga ataacaaaag agcgcactcg ttactcgtac cttgtcagct cccttccaaa      1260
     agatgttctg cggaaagtga tggacatcat cactacgccc catcgtgaag aaccatattc      1320
     cacactaaaa acacaattgt tagaacgtct ttctatcagc gaggaacaac gcttgtcaca      1380
     attattgtat catgtggaaa tgggcgatag aagtccttct gatttctatc gtcatatggt      1440
     gcatttagca ggcgattctg aaaacctttc tgcagagttg atacgtaaac tatggctaac      1500
     ccgtctaccg aaaacaatcg aagtttccct tatagcaata ggcacaaggg acataaacga      1560
     acttctgaaa atagcggaca gattgtggga ggttactcaa gcaggacatg tgactgttct      1620
     tgagaacaat accatacaac caaaagtgac cggccccgac agtacagagt cacttaagca      1680
     agaaatcggg gaattaaaag aaatggtaaa gaagctagct ttacgggctg aagagaactc      1740
     tcgagggcgg caacgaagtc gaactcgcca caatggtaat tttcgttccc gtacgccttc      1800
     ctctgggcga caacgatcgt tttgttggtt tcacgaccgt tatggaataa acgcaaggaa      1860
     atgcattcag ccttgccagt tcgaacgatc gcaatcctcc atgaacaatg acgaacataa      1920
     aaaaaactaa tatgctcagc ggtcccggcg gacggccaac gagccatcat aaattcctct      1980
     cctagacttt ttatcgatga tgaaatcagt cgatttttgt ttctaattga tacaggagcg      2040
     gatgtgtccg tcattccttc atcattaatc ggaaaatttg ctaaacctac tgaccaagtg      2100
     ctgtcagcag ctaacggtac agtcatacac atttatggca caaagctgct tacggtaagc      2160
     cttgggcttc gacgcgtgtt tacacatcct ttttacatag cctcagtaga ccgccccatt      2220
     attggcgcag atttcctgaa gaaacatggt ttattagtcg atctcaaatc tcgtcgtttg      2280
     attgacccta tgaccaacca aacttcaaag gctacaatag caatagtaaa cactccaaca      2340
     cccaaacatt ttgtaatgga gaaaaacatt ttcggcgaca ttatccaaca atttccttcc      2400
     cttacggatc ctccaaatta caatgcaccc gttcgtcact ctgttcgtca ttatattcaa      2460
     accaaaggcc cattaccttt ttctaaacca aggcgactgg atcccgaaaa acacaaaata      2520
     gcacaggcag aattccagca catgctggac ttaggaatat gtcgtgtgtc ttcatcccca      2580
     gtttcgtcac cattgcatat ggttcagaaa gcggatcggg attggcgtcc ttgtggcgat      2640
     tatagacgac tgaacgcaat aacagtgccc gatcgctatc cagtaccaca tgtacaggat      2700
     tttaccatga atttgcaggg gtgcacaata ttttccaagc tggatatcat tcgtgcgtac      2760
     cacctgattc ccatggctga ggaagatatc cccaaaacag cgatcaccac acctttcggt      2820
     ttgtttgaat ttcttagaat gccatttggc ctgagaaacg caagtcaaac attccaaagg      2880
     tttatgaaca acattttccg tgatctcagt tttgttttca tatacatcga tgatatactt      2940
     atagcaagct cgacgaaaga acagcactcc gagcatttgc acgaagtact gaaacggtta      3000
     gctgatcacg acgtaaaaat taaactgtca aaatgcgtat ttggagtacc gacaatagat      3060
     tttctcagcc acaccatttc agctaaaggc atcattccga aagctgataa ggtcgaagcg      3120
     ataaagaatt ttccttcgcc tacatcagta aagcagctac aacgaattgt tggcatggtt      3180
     aattattacc atcgattttt accgcaaata tcgagccatc ttaaaccgtt gtatgagtta      3240
     attgcagaac acggcaatag aaaaactaaa aaggaattca tctggtccga gaagtgtgag      3300
     cgtgccttgc aacaagtgaa agaccaactt tccaacgcca cgatactggc gcatcctata      3360
     ccagatgcaa cctactcatt aacaacagac gcatcaagtt ttgcagtagg agccgttctg      3420
     caacaacgta accaaggaag ctgggaacct ttggcgttct tctcaaaaac gatgacgcca      3480
     acggaacaaa ggtattccac tttcgacagg gagttgcttg ccattgtcct agggatcaag      3540
     cacttccgtc atttcttgga aggcagatcc ttcaccgttt tcaccgatca caagccactt      3600
     accactgcac tcacttctaa atcagaaaaa tctcctcgcc aaaatagaca tcttgaattc      3660
     atatcacaat ttacatcaga tattcaattc atagcaggag acagtaacac agtagcagac      3720
     gctttatcgc gaatcggtga aaccgaagcg atcacacatc tctcatatga aaccatgtcg      3780
     aaacgccaac attcggacaa acaattagaa caacttctaa atgaggcagc gaaaccagat      3840
     tcaaaattta agcttgaacg tctaacatta gataacaata gtttagtttt cgaatcctca      3900
     accggcaaaa acagacttta cgttccacat tgccttagaa aacaaatttt tgacaatttc      3960
     catagcttgt ctcatccagg aatacgggca tcaagaaaac ttttagcgga aagatttttc      4020
     tggccagcta tgaacaagga tgtggcaaat tacacacgtt cttgtcttgg gtgtcagaga      4080
     tcaaaaatca tccgtcatac acgttcgcca accgataaca ttcctgttcc tcagggtcgt      4140
     ttcgatcaca tccatatgga tattgtgggt cctctaccac cctccgaaga acatacttac      4200
     ctacttacaa tagtcgatcg atttacacgt tggcctgaat gttttcccat aaaagacata      4260
     tcagcaaata ccatagcaaa aacattcgtt aatcaatatg tatcacgatt tggttgtccg      4320
     ttggtcatta caacagatag aggtagacag tttgagtcta gacttttcgc ggaacttact      4380
     aaacttttag gaacgcatca catcaaaacc actgcttacc acccgcaagc aaatgggatg      4440
     gtggaacgat tccatcgcca tttgaaaaac tctttaaaag cttgtgacga tcccactcac      4500
     tggattaaac atcttccgct gattcttttg ggtatacggg tggcctataa aaacgacctt      4560
     aaagggtctt ctgcagaaat ggtttacgga cagagtttgc gacttccatc tgaagtattt      4620
     ttaccatctg atcaaaatgt ttccgattcc actgatgatt tcatcataca attaaaaaat      4680
     tctttaaaat cggtcaaacc tactcccaca agaacgaaca atagtaaaca aaattttata      4740
     ccaaatctgt tagaaacctg ttgtaaagtt ttcgtgcgtg tggacaaggt aaaaacggga      4800
     cttcaagcac cctatgaagg accgtacgat gtcgtacgaa gatgcaggaa attttacata      4860
     attaatatca aaggtaaaaa cgaatccata gcaatagacc gactcaaacc cgcatttcaa      4920
     accgaaatct ccgagacgaa gccttatcga ccaaaaaaac aagtacactt caaagtatag      4980
     ttcaaataaa aatcagataa tccgcgtgac tccgtcactg ggggggagtc c               5031
//
ID   Gypsy-17_AnFu-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-229
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2830-2830 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 229 BP; 81 A; 53 C; 54 G; 40 T; 1 other;
     tgtagtgatc gtggcatttt gcccatcact acgagagaac gcaggacacc cctgcggcgt        60
     acccatctct agcgacacta agactaggaa gaaagaaaca ctataaaaaa ggagcgctag       120
     tgcacaggag tcagacgatt aggaaccgcg gaagcgacag gatcagttcg cagagaaaag       180
     cactgtgaat aaaataatts tatctataac actaaccgaa cacgcgtca                   229
//
ID   Gypsy-17_AnMe-I repbase;    DNA;    INV; 4458 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4458
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6829-6829 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4377
FT                 /product="Gypsy-17_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPTKEEMVCTLQSNGVEVPPTATMSQIKKLFEPYAPP
FT                 CVRSEKQDGRDEIPEASQAGEMKLAPAIMCDTGNNAETASDVGRTPSVAIM
FT                 SDRDEIHALRTKLEILELRQXIAALEFQPMNTPPQLFMGFDKFLEKFSGDN
FT                 DESVDEWFMELERVFEPYNMNETSKYYNTRQLLTGTAALLAKSAEINTYAK
FT                 LKVEMHKAFVKTTSMEQIYQQLRARRLARNETITKYVLEMQRIAGKRIGEE
FT                 ELINIIIDGIGDPVNMASVRFAATSMDTLKQLLKKYETYRATAPLIPVTST
FT                 IVXKQHDISKEXYAAPRCYNCRKMGHTQNQCRLPARPPGSCFRCHKEDHIY
FT                 QNCPQRVQQAAATMHVIDSEEEEPHNNQTIVKMNAHQEVSVAYKCNDVWST
FT                 NLKSLTLCDTGSPKSFINAGLLPENLLGEPQPSNMRGIGSQELKSYGKLEL
FT                 RITLNGTTIEHPFIILPKHYMAWPLILGRDALRTFKIHLTQFKYVYDMKKL
FT                 KDLNKNVRVSYLDQNIIEKLHTLNIHRKSIVRSGEDNMPILPISKQRDLCD
FT                 INDTFGSLCMIEITDESSVIDIGTHLSEDQIKLVSNSVIQNYHKFPIEEVT
FT                 SPAYSVKINLEHDTPISTKPRRLSFAERAKVKDIVKNLLEKNIIRPSNSPY
FT                 ASAIVLVRKRNGEIRKCVDYRPLNKITIRDNFPLPLIDNCLEHLGNKKYFT
FT                 LLDLKSGFHQLAMQEESIKYTAFVTPDGQYEYTRMPFGLKNAPAEFQRFIN
FT                 SILREFIDRGXLVVYIDDILIASNDFDNHIELIGKVLYTLRKNGLELRLDK
FT                 CKFAQNELNYLGYKANASGILPSDHHIESIKNYPVPKTKKQVQQCLGLFSF
FT                 FRRFVPGFSTIAKPLTNLLKDKVNFDFDETCLKSFETLRNELIKSPVLSIY
FT                 DPSRETELHCDASSLGFGSVLLQKQNDGKYHPIAYFSKTTSADEAKLHSYE
FT                 LETLSVIYSLKRFHTYVHGIPIKIITDCNSLVQTLKNRNVSAKIARWSLFL
FT                 EDYDYTMHHRPGSSMPHVDALSRLEQVAGIDDLDIDFQLRIAQARDVEIKS
FT                 LKTEIESKGVSGFTIRDGVVFKQSPTSQLKMYVPSEMINNLIRHIHEKIGH
FT                 LAVDKCYMQISKYYYFPQMKTRITNYIKNCLKCVMYSAPARVNNRNLFSIP
FT                 KTPIPFDTLHIDFLGPLPSVHSKKKHLLVVIDSFTKFTKLYPTISTNTREV
FT                 CNALKQYFMYYSRPRRIISDRATCFTSDSFSNFLTSRSITHILNATGSPQA
FT                 NGQVERVNRVLRPVLSKLSNPVDHADWSAQIPNVEYALNNTTHTSTHFAPS
FT                 VLLFGIEQRGPVIDELTEHLDEINNDSRVDLNSIRSQASVNIMKHQQVNEQ
FT                 QHLSKCKPAPEFVEGEFVVIRNVDNTVNSNKKLIPRFKGPYVIHRRLPNDR
FT                 YVVRDIDGCQQTQLPYDGVLEANKLRKWIVPIPGSD"
XX
SQ   Sequence 4458 BP; 1484 A; 924 C; 869 G; 1174 T; 7 other;
     actcagaagt gggattcacc tcagaacatg ccgacaaagg aggaaatggt gtgtacgtta        60
     caaagtaatg gcgttgaagt gccacctaca gcaacaatgt cgcagataaa aaagctgttc       120
     gaaccatacg caccgccatg tgttcgcagt gaaaagcaag atggccgcga tgagattccc       180
     gaagcgtctc aagcgggaga gatgaagcta gcacctgcca tcatgtgtga tacagggaac       240
     aatgccgaaa cagccagtga cgtaggaaga acgccgagtg tagcaatcat gagcgaccgt       300
     gatgaaattc atgctcttcg caccaaactg gaaattcttg agcttcgcca amaaatcgct       360
     gcccttgaat tccaacctat gaatacacca ccgcaacttt ttatgggttt cgacaagttt       420
     ctggagaaat ttagcggtga caatgatgaa agtgtggatg aatggttcat ggaattggag       480
     cgtgtattcg agccgtacaa catgaatgaa acatctaaat actacaacac gcgccagctg       540
     ctcactggaa ctgcagcact attggccaaa tctgctgaaa tcaatactta tgccaaactg       600
     aaggtggaga tgcacaaagc atttgtgaag acaacgtcca tggagcaaat ctaccaacag       660
     ttgmgagcgc gacgattggc acgcaatgaa actataacga agtatgtgct tgagatgcag       720
     cgaatcgccg gaaaacgcat cggtgaagaa gaattgataa acatcataat tgatggaatc       780
     ggcgaccccg taaacatggc gtctgtgcgc ttcgcagcta cctcaatgga tacactaaaa       840
     caactcctga agaaatacga gacctatcgt gctactgctc ctctgattcc tgttacgtca       900
     actattgtca amaaacagca tgacattagt aaggagaawt atgcagcccc ccgatgctac       960
     aattgccgaa aaatgggaca cacacagaat cagtgccgac taccagccag accacccggt      1020
     tcgtgttttc gatgtcacaa agaagaccac atatatcaaa actgccccca acgcgtacaa      1080
     caagctgcag caaccatgca cgttatcgat tcggaagagg aagaacctca caataaccaa      1140
     accattgtta agatgaatgc gcatcaggag gtaagtgttg cctataaatg taatgatgta      1200
     tggagcacta atttaaaatc attgactctt tgtgacacgg gcagtcctaa gagctttatc      1260
     aatgcaggac tactkccgga aaacttgtta ggtgagccac agccttcaaa tatgcgtgga      1320
     ataggtagcc aggagctcaa atcatatgga aaacttgaat tacgtatcac acttaatgga      1380
     actacaatag aacacccttt tatcattcta cccaaacatt acatggcatg gcctctgatt      1440
     ctaggcaggg atgcattgcg gacgtttaaa atacacctta cccaatttaa atacgtttat      1500
     gacatgaaaa aacttaaaga tttgaataaa aatgtcaggg ttagttatct agatcagaat      1560
     ataatcgaaa agctccatac actaaacata catcggaagt ccatcgtgcg ctcgggggaa      1620
     gacaatatgc caattttgcc gatttctaaa cagcgtgatt tatgtgacat caacgacacc      1680
     tttgggagtc tgtgtatgat agagattact gatgaatcta gtgtgattga tattggtact      1740
     cacctctcgg aagatcaaat caaattagta agcaattcag ttattcaaaa ttatcacaag      1800
     tttcctattg aagaagtcac ttctccagct tattcagtaa aaattaattt ggaacacgat      1860
     acacccattt ctaccaaacc tagacgtttg tccttcgccg aaagagctaa agtcaaagat      1920
     atagtgaaaa acctgttaga aaagaacatc atccgtccaa gtaactctcc atacgcctca      1980
     gcaatagttc tagttcgcaa gcgtaacggw gaaattcgta aatgcgttga ttatcggcca      2040
     ttaaataaaa ttacaatccg agacaatttc ccattacccc ttatcgacaa ttgccttgaa      2100
     catctgggaa acaagaagta ttttacgctt ctggatctca agagtggatt tcatcaattg      2160
     gccatgcaag aggaatctat aaaatacaca gcgttcgtta ctccagatgg acaatacgag      2220
     tacacgcgca tgccttttgg gctgaaaaat gcaccagcag aatttcaacg ctttatcaac      2280
     tcaatactcc gtgaattcat tgatcgtgga sagttggtgg tgtacataga tgatattctt      2340
     atagcctcga atgattttga caatcatatt gaattgattg ggaaagtttt atacacctta      2400
     cgcaaaaatg gtctagaact gcgattggac aaatgcaaat tcgctcaaaa tgagttgaat      2460
     tatctcgggt ataaagctaa tgcatcaggc attcttccta gcgaccatca tatcgaatca      2520
     attaagaatt accccgttcc aaagactaaa aaacaagttc aacaatgttt aggattgttc      2580
     tcatttttcc gtagatttgt accaggattt tcaaccatag caaagcctct aacaaactta      2640
     ttaaaagata aagtaaattt tgattttgat gaaacctgct taaaatcttt tgaaacatta      2700
     cgtaatgaac taataaaatc acctgtttta tcgatctatg acccaagccg tgagactgaa      2760
     ttgcattgtg atgcaagctc tttaggcttt ggatctgtac tactacaaaa acaaaatgat      2820
     ggaaagtatc acccaatagc atatttctct aaaacaacat cagcagatga agctaaattg      2880
     catagctacg aactagagac gctctcagta atttactcgc tgaagcggtt ccatacttac      2940
     gtccacggga ttccgattaa gattatcaca gattgtaact ccttggtaca aactttaaaa      3000
     aaccggaatg tctcagcaaa aatagctcgt tggtccttgt ttcttgaaga ttatgactac      3060
     accatgcatc atcgccctgg gtcttcaatg ccacatgtag atgcgcttag tcgattagaa      3120
     caggttgcag gaattgatga cttagatata gattttcaac tacgtatagc gcaagcacgt      3180
     gatgttgaaa ttaaatcttt aaaaactgaa atagaatcta aaggagtgag cggcttcaca      3240
     atccgagatg gagtagtatt caaacaatca ccaacaagcc aattaaagat gtatgttcca      3300
     tcagaaatga ttaataactt aatacgacac attcatgaaa aaataggaca ccttgccgta      3360
     gacaagtgtt acatgcagat ttccaaatat tattatttcc ctcaaatgaa aacaaggatc      3420
     actaattaca taaaaaattg cttgaaatgt gtaatgtatt ctgcaccagc aagagttaac      3480
     aatagaaatt tattcagtat acctaaaaca cctattccgt ttgatacttt gcacattgac      3540
     tttttaggcc ccttaccatc tgttcattca aaaaagaagc acttactggt agtaatagat      3600
     agttttacta aatttacaaa gctgtatcct acgatatcta cgaacacacg tgaagtttgt      3660
     aatgctctca agcaatattt tatgtactac agtcgcccta ggcgcatcat tagcgatcga      3720
     gcaacgtgtt tcacatctga ttctttttca aatttcctaa cgtcgcgtag tattactcac      3780
     attttaaatg caacaggatc acctcaggcg aacggacagg ttgaaagggt gaatcgtgtc      3840
     ctacgaccag tactgagcaa actttcaaac ccggtagacc atgcggattg gagcgctcaa      3900
     attcctaacg tagagtatgc tcttaacaat actactcaca catctacaca ttttgctccg      3960
     tcagttcttt tatttggcat tgaacagaga ggtccagtga tcgatgaatt aaccgaacat      4020
     ttggatgaga taaataacga ttcaagagta gatttaaata gtatacgatc acaagcatca      4080
     gttaacataa tgaaacatca acaagttaat gagcaacaac acctgtcgaa atgtaaacca      4140
     gcccctgaat ttgtagaagg agaatttgtg gtaatacgaa acgtagataa cacggtaaac      4200
     tcaaacaaaa agcttatccc tagattcaag ggcccctatg tcatacacag acggcttcca      4260
     aacgatcgtt atgttgttcg ggacatcgat gggtgccagc agacccaact tccttatgac      4320
     ggagtgttgg aggcgaataa gttgagaaag tggattgtgc cgatcccggg cagtgattga      4380
     cttccttttg cgtatctttg gcaacactta gtctataagt aaattgaggg caatttatca      4440
     tgtcaggaaa ggccgagc                                                    4458
//
ID   Gypsy-17_AnMe-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-205
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6854-6854 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 205 BP; 72 A; 28 C; 46 G; 57 T; 2 other;
     tgtaaacatc ttgagtttat agtaatcttg ggtttgtgag catcttgggt ttgtgagcat        60
     cttgggtttt gacaaatacg atgtccgaag aagtgacagt gtgcgagctg tcaaagcaaa       120
     aaaaaaaaag agataagcct tggggaaaag accttctaca ataaactcct tgtgaaaawa       180
     mtaaaaaaaa tccgtgtgta ttaca                                             205
//
ID   Gypsy-17_AnSt-I repbase;    DNA;    INV; 3806 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3806
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 800-800 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..3792
FT                 /product="Gypsy-17_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MFSPDDTTGMDDQRRLSQNGANALNAAFVPRQHPPSQ
FT                 STGTLTVHPPSQHPAAAAQPGTATQGPDTAMLYQMLQLMQQQMQQQQQQQQ
FT                 MMAQMMQQQQHTAPQPQYQPQQQPAAPRDPEIIMDALSASITEFRYEAESG
FT                 LTFNAWYKRYEDVFAQDASRLEDSAKVRLMMRKLGTIEHARYSNYILPQLP
FT                 RDISFNETVSKLKTLFGSTESLLSKRYRCLKIVKARNEDLLTFSSRVNRAC
FT                 DDFQFASMNEAQFKCLILICGLRDDADAEIRMRLLTIIEGKSEITLEQLST
FT                 EGQRILGLKVDSALISAEGVDRVLALHNEEKRRFPATNRPNYTHQRQTQPR
FT                 NVESAPVSKPRRPCWLCGEYHWVRECTYGSHKCQDCGRHGHREGYCRTSGP
FT                 RRERGSRFRKRSAVAIRVVTVNVGNVQQKRKYVITQIGTRTIELQLDTGSD
FT                 ITIIGRETWKQLGMPTLSSAKVHAKTASGTRLQLDGEFKSHVTIHGRTEVA
FT                 TIRVVPSDLHLLGADIIDLFQLGQMPLDVLCSKVECESATWENRFPAVFNG
FT                 TGLCTKANIKLHLKPNVRPTFCPKRPVAYAMQATVEKELNRLEQLKVITPV
FT                 DYSEWAAPIVVVRKSNGSIRICGDYSTGLNSALRSHEYPLPLPDDIFSKLA
FT                 QSRYFSKIDLSDAFLQVEIDAKYRPLLTINTHRGLYHYNRLPPGIKIAPAA
FT                 FQQLIDTMLAGLKGTSGYMDDVIVGGKTEREHDENLLNLFRRIQQYGFTIR
FT                 AEKCAFKMEQIEYLGFIIDRRGLRPNPAKIEVIRKLPAPRNVSEVRSFLGA
FT                 INYYGRFVPRMRDLRYPLDALLKHEDKFAWTPECERAFTRFKDMLSSELLL
FT                 THYDPNAEIVVSADASAVGLGATISHKFADGSLRVVQHASRALTSAETRYS
FT                 QIDREGLAIIFAVTKFHKMLYGRHFRLQTADRPLLRIFGSKKGIPVYTANR
FT                 LQRFALTLQLYDFSIEYVPSAKFGNADVLSRLINEHAKPEPEYIVASTELE
FT                 DDVSFVATKSINAFPLNFRDVANATRADLLLRKVSRYVMEGWPPNIAYGAE
FT                 LARFFNRREALSTVRGCILFGERVVIPVRLRQKCLQQLHHGHPGMQRMKAL
FT                 ARSYVYWPNIDEDISECVETCHACAVAQPTGTTTPLPLDLLMDSTNVXRPA
FT                 PVTINEDHSPLPLPSPRPVPFLPRRRQQPMEPPRRSSRPRRLPRRLDGYRL
FT                 H"
XX
SQ   Sequence 3806 BP; 1032 A; 1015 C; 957 G; 800 T; 2 other;
     gtggcgacga ggatataaga maaaaaaaca cacaatattc attaacaaga acttttcgtg        60
     tcgcgttcgt aagttttttt tttcgcgctc cgcaatcgtt tcgcgtgtta cgtgctatct       120
     ctgtaaaaaa ggacaattcc gccaaaacgc cgcagaatta tgtttagccc cgacgacact       180
     accgggatgg acgatcagcg tcggttgtcc cagaacggag caaacgcatt gaacgcagct       240
     ttcgtcccac gccagcatcc gccatcgcaa agcacaggga cgcttacagt tcatccaccc       300
     tcacagcatc ccgccgcagc agcacagcca ggcacggcga cgcagggtcc cgacacagcg       360
     atgctgtacc aaatgctgca actaatgcag caacaaatgc agcagcagca gcaacagcaa       420
     caaatgatgg cacagatgat gcagcagcaa cagcatacag caccccagcc ccagtaccaa       480
     ccgcagcagc agcccgcagc gccacgagac cccgagatca tcatggatgc attatcggca       540
     agcatcacgg aattccggta cgaggcagaa tccggtttaa cgttcaacgc gtggtacaag       600
     cgttacgagg acgtgtttgc acaagatgct tcccggctcg aggattcggc aaaagttcgg       660
     ttgatgatga ggaaattggg cacgatcgag cacgcacggt actcaaacta catcctacca       720
     cagttgcccc gcgacatcag cttcaatgaa acggtaagca agcttaaaac cctattcggc       780
     tcaacagaat cgctgcttag taaacgttac agatgcctaa agatagtgaa agcgaggaac       840
     gaggatctgt taaccttttc gagccgagta aaccgcgcct gtgacgactt ccagttcgca       900
     tcgatgaatg aagcgcaatt caaatgcctt atactgatat gcggattgag agacgatgcg       960
     gatgccgaga tccgcatgcg attgctgacc atcattgagg ggaaatcgga gataacgttg      1020
     gagcaactgt ctaccgaagg tcaacgcatt ctgggtctca aagtagacag cgcgttgata      1080
     tccgccgagg gggtagatcg agtactggcg ttgcacaacg aggaaaagcg acgttttcct      1140
     gcaacaaacc ggcctaacta cacgcaccag cgccagacgc agccgcgaaa tgtggaaagt      1200
     gcaccggtgt cgaaaccacg cagaccgtgc tggttgtgtg gtgagtacca ctgggtgcga      1260
     gagtgtacgt acggctctca caagtgtcag gattgcggga gacacggaca tcgagagggc      1320
     tactgtcgca cttcgggccc aaggagagag agaggatccc gattccgcaa gcgatcagct      1380
     gtagcgatac gtgtagtgac ggtcaatgtg ggcaacgtgc aacaaaaacg taaatacgtt      1440
     atcacgcaga taggaaccag gacgatcgaa ttgcagctcg acacaggatc cgatatcact      1500
     attatcggac gggagacgtg gaagcagctc ggtatgccaa cgctttcatc ggcaaaagta      1560
     cacgcaaaaa cggcatcggg tacacgtctg cagctcgacg gcgaattcaa atcgcatgtg      1620
     acgattcacg ggaggacaga agttgcgaca atccgtgtcg taccatcaga cttgcattta      1680
     ttaggagcgg atatcatcga ccttttccaa ctgggacaga tgcctttaga tgtgctttgc      1740
     agcaaagtag aatgcgaatc tgctacctgg gaaaacagat ttccggccgt gtttaatggt      1800
     acagggctat gcacgaaggc caacattaaa ctgcatctaa aacccaacgt ccgccctacc      1860
     ttctgtccaa aacgtccggt ggcttacgcc atgcaagcaa ctgttgagaa ggagctaaat      1920
     cgcctggaac agctgaaggt catcacgcca gttgattatt ccgagtgggc cgcgccaatt      1980
     gtcgtcgtta ggaagagcaa cggtagcatc cgaatatgtg gggactattc gacgggactg      2040
     aattcggctc ttcggtcaca cgagtaccca ctaccgctcc cagacgatat cttctccaaa      2100
     ttggcccaat ctagatactt cagcaaaatc gacctttccg acgcattctt gcaggtcgaa      2160
     atcgacgcca aataccgccc cctgcttacg attaacaccc atcgcggttt gtaccactac      2220
     aaccgcctac cgcctggtat caaaatcgct cccgctgctt ttcaacaact tattgatacc      2280
     atgctcgcag ggctgaaggg cacatccggg tacatggatg acgtaatagt cggaggtaaa      2340
     acggaacgcg agcacgacga gaatctgctg aaccttttcc gtcgtattca gcaatacgga      2400
     ttcactatcc gtgcggaaaa gtgcgctttc aagatggagc agatcgaata cctcgggttc      2460
     atcatcgatc gacgtggcct tcgacccaat ccagctaaga tcgaagttat aagaaagctg      2520
     ccagcgccaa gaaacgtgag tgaagtccgg tcattcctag gcgcgataaa ctattacggc      2580
     agattcgtac ccagaatgcg tgacctccga tacccgctag acgccctatt aaagcacgag      2640
     gacaaattcg cttggacacc agaatgtgag cgcgccttca cccgttttaa ggacatgcta      2700
     tcctccgagt tgctgttaac gcattacgat ccgaacgccg aaatagtagt gtctgcagat      2760
     gcatcagccg tgggactcgg ggctaccatc agccacaaat tcgcagacgg ttcattgagg      2820
     gttgtacaac acgcatcgag agcgctaact agcgccgaaa ccagatacag ccagattgat      2880
     cgcgaagggc ttgccatcat attcgccgtc accaagttcc acaaaatgct gtacggtcgt      2940
     cattttcgct tgcagaccgc tgatcgcccg ttgctgcgca tattcggttc gaagaagggt      3000
     ataccagtct acaccgccaa tagactgcaa cggttcgcgc tcaccttgca gctttacgat      3060
     ttcagcatcg aatatgtgcc ctctgcaaag ttcgggaacg ctgatgtatt gtccagattg      3120
     atcaacgagc acgcaaaacc ggaaccggaa tacatcgtag ccagcaccga actagaagat      3180
     gatgtaagtt ttgttgcaac taaatcaatt aatgcatttc ctcttaattt tagagacgtt      3240
     gcgaacgcta caagagcaga tttgttgttg cgcaaggttt ctcgctatgt catggaaggt      3300
     tggcccccga acatcgccta tggtgcagag ctggctcgct tttttaacag acgcgaggct      3360
     ctgtctacag ttcgaggttg cattttgttc ggggagaggg tagtaatccc tgtccgatta      3420
     cgccagaaat gtctgcaaca gctacaccac ggtcatcctg gaatgcagag gatgaaagct      3480
     ctagccagaa gttacgtgta ctggccaaac atcgacgagg acatttcgga gtgcgtcgaa      3540
     acctgccatg cttgcgccgt ggctcaacct actggaacaa caacgccgct gccgcttgac      3600
     ctcctgatgg actcaacgaa cgtcgmacga ccagctccgg tcacaatcaa tgaggaccac      3660
     tctccgttac cgttaccatc tcccagacca gtaccctttc tgcccagaag acgacagcag      3720
     ccgatggaac cgccacgccg gtcttctagg cctagaagac tcccgcgtag gctcgatggg      3780
     tatcggctgc attaaaaggg gggaga                                           3806
//
ID   Gypsy-17_AnSt-LTR repbase;    DNA;    INV; 278 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-278
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 813-813 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 278 BP; 72 A; 56 C; 73 G; 77 T; 0 other;
     tgttatggtc caacctggct cggtagatct gtcacgggaa ctcaccggtg acatgcaacg        60
     gtcaccggtt gatgtgttag tgcgatctac cgagaggtca gcgaacgagc gtgagcgtcc       120
     actaagagat cagattcgtc ctagcgtccg agcggtgatc tctccccgat tgactgtatg       180
     tgctgtgtct gtgcgttgat atacaagtgg cgtgaatttg tatccgtgta aaatatttga       240
     tgtataaata taggttctgt taaaaacaaa acataaaa                               278
//
ID   Gypsy-17_BTa-I repbase;    DNA;    INV; 4620 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4620
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 681-681 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           193..4485
FT                 /product="Gypsy-17_BTa-I_1p"
FT                 /translation="MEVCSKPKPLSVKGNLKENWKRFKQEFEDLLVSMEWD
FT                 SKSDKVKAAKLRNLIGPEGRERIEALGLQTSEDYSELISKLDAWAEPQKNI
FT                 TMERAKFSSRNQNPNESFDEYVSDLKRLISTCEYGTLKDEILKDRIVLGVA
FT                 DVKLKEHLLRISDLTLDKAEKLAHAVETAKASIAVMSSSEQHEVNHEVNPV
FT                 QKFRGRGRGRGNFQRSSNSQRGQSRSNQPNGQYQQQRSQYSQSRGGNRGDY
FT                 NGNFRGKQSNYCDRNDNYYCKKCATKHGPRQCPAHNKECGRCFNLHHFARC
FT                 CRANNVNEVNVEEKKNDVVKRAVESVVYRECHELVAYSPKASFYETRVINC
FT                 DKADKCLETATKNLEIGKPAENANESQVNVLDVQDHPNVSSVGEQKKPRKE
FT                 WRETIFLENVPVSMKLDPGSEVNTLPESIFKAILKKTKIPLEKTNEILGGI
FT                 GHGVARPLGIVRKVDCKTSFDVRGYFDFYVTKDSDTKALLGIEACERLELV
FT                 IRRVHSVSTNAEQAAFVEKNRDVFTGSGKVPGLVSFQVKPNPDFKILPPRR
FT                 YPIETSEKLLNKLNKLEKQEIVLKIPINEKLLCVSNILVREKPDGDLRLCL
FT                 DPKNLNECLITRKCAIPTVDEISAKLSGKKWFTVFDEKEAFYHFELDEYSS
FT                 RLCAFNTPFGVYRFLRMPFGIICAAECCHERNVTIFGGIKGVTVYIDDILV
FT                 ANDTEKEHDESINLVIIQARKHNVKFKLSKLQYKQRFAHFTGFIFSEKGRQ
FT                 IDPERTRALTAIVDPKNKKELMSIMGMLNYVRQFLPNLSNESAPLRELLKK
FT                 DVEFLWTPYHSEVLAKLKKRVAEAPILSNFDSSQEIVLQSDASKSGIGACL
FT                 MQLGRPVAYFSKALTETQTNIWGQIDKEFYAIIAALEKFYQFTYGRDVTVE
FT                 CDHKPISYLVHKDIXKIKSQRLKKFRQRLYNFKVKIIFKPGRKMYIADLLS
FT                 RQYLQDVAEDDPEEMEYVHSVLTEEKGSLSDLEELKRETENDPALQILKEY
FT                 LLNGWPNNKSVWPDNVKPFWKIKEFLYLEDGVIFNDERIVVPRAMKEKFLT
FT                 LLHLGHFGISKTIAKATELYYWPGMNSDVTNFVKNCPICEKFSMNNRNEPL
FT                 MPIELPKNVFEVLGIDFAELNGESFLILVDYLSKWLEITKVPSHHARTVIN
FT                 AVKPIFATHGYPKEIICDNVPFGAREFKNFIEEHKGKVLTTSPNFPQAHGM
FT                 IEIYVKIAKGMIKKSKESKVDLDEMLLEYRNMPLTGMKVSPAQILMSRQLR
FT                 SKLPVNPNQLKPKVVNAREKFLEKQAKVKEQFDKSATRSETEFKAGDNVAV
FT                 RKDKIWIKGIIVGPAGTPRSYIVQTAHGNLRRNTFHLKKSQTERFNPLLQQ
FT                 NDNYDFLEAELNDNTQLHNVIEPDNNVPPNAQVVNNALPNGQAQNNEPENV
FT                 IPRRIRRVPEWHKDYVM"
XX
SQ   Sequence 4620 BP; 1679 A; 703 C; 959 G; 1278 T; 1 other;
     tggcgcagtc gaatgtattt acgtgccgaa agtgttttga aagccaatag tgaaagccaa        60
     agttattgaa agtgaaatat cgtatctcta atgaaagtgc aaacgtgact gagaacagtg       120
     aaagcctatt ttgaagccta aggtgaagca catgcaaatt tgaaaactgt aagttttgga       180
     tatcttacaa ttatggaagt ttgttctaaa ccaaaaccgt tgagcgtcaa aggtaacctc       240
     aaagaaaact ggaagaggtt caagcaagaa tttgaagact tgctagtctc aatggaatgg       300
     gactcaaaat ccgataaagt caaagcggcc aaattaagaa atttaattgg tcctgaaggt       360
     cgagaaagaa ttgaagctct aggtctacaa acgtctgaag actatagtga actgatatcg       420
     aaactagatg cttgggcgga acctcagaaa aatatcacaa tggaaagagc taagttcagc       480
     tctcgaaacc aaaatccgaa tgaaagtttc gacgaatacg tgtctgatct aaaacgtctg       540
     atctccacgt gtgaatatgg tactctcaaa gatgagattt taaaagaccg aattgtcttg       600
     ggagtagcag atgttaagtt aaaagaacat cttctccgaa tctctgatct caccctagat       660
     aaagcagaga agttagcaca cgcggttgaa actgctaaag caagcatagc ggtgatgtca       720
     tcatccgagc aacatgaagt aaaccatgaa gtgaatccag tccaaaaatt cagaggtcgt       780
     ggtcgcgggc gaggaaattt tcagaggtca tccaactcgc agcgtggtca aagcagaagc       840
     aaccagccaa atggacagta tcagcaacaa agatctcaat actctcaatc acgtggtgga       900
     aaccgaggtg actataacgg aaatttcaga ggtaaacagt ctaattattg tgataggaat       960
     gataactatt attgtaaaaa gtgcgcaaca aagcatgggc cgagacaatg tccagcccat      1020
     aataaagaat gtggaagatg cttcaatcta catcattttg caaggtgttg tagggctaat      1080
     aatgtaaatg aagttaacgt agaagaaaag aaaaacgatg ttgttaagcg agcagtcgaa      1140
     tccgttgttt acagagaatg tcatgagcta gtagcgtaca gcccaaaagc aagtttttat      1200
     gaaaccaggg taataaattg tgacaaagca gataaatgtc ttgaaactgc cactaagaat      1260
     ttagaaattg gaaagccagc tgaaaatgct aatgagagtc aggtaaatgt ccttgatgtc      1320
     caagatcacc caaatgtcag tagcgttggt gaacagaaaa agccaagaaa ggaatggaga      1380
     gaaacaatat tccttgaaaa cgttccggtt agtatgaaac tggacccggg gagtgaagta      1440
     aacactctac cagaaagcat ttttaaagct attttaaaga aaactaaaat tccactggaa      1500
     aagacaaacg aaatattagg tggaataggt cacggtgtag ctagacctct aggtattgta      1560
     agaaaggtgg attgtaaaac aagttttgat gtgcgaggat attttgattt ctatgtcaca      1620
     aaagatagtg acactaaagc attattaggt attgaagcgt gtgaacgcct tgaattagta      1680
     ataagaaggg tgcactctgt tagcactaat gcagaacaag cagcttttgt tgagaaaaat      1740
     agagatgttt ttactggtag cggcaaagtt ccaggtttag ttagttttca ggtaaaaccg      1800
     aatcctgact ttaaaatttt acctccgagg cggtatccga ttgaaacaag tgaaaaactg      1860
     ttgaataaat taaataaatt ggagaagcaa gaaatagttt taaaaattcc aataaatgaa      1920
     aaactgttat gtgtcagtaa tatattagtc cgtgaaaaac cggatggtga tttacggtta      1980
     tgtcttgatc caaaaaattt aaatgagtgc ctcataacaa gaaaatgtgc tatccctact      2040
     gttgatgaaa tcagtgcaaa gctgtcaggt aaaaaatggt tcacagtgtt tgatgaaaaa      2100
     gaagcgtttt atcattttga actggatgaa tactcaagtc gtttgtgtgc atttaacacg      2160
     ccttttggag tctatagatt tttacgtatg ccttttggga taatctgtgc agcagagtgt      2220
     tgccatgaaa gaaatgtaac tatttttgga ggaatcaaag gtgtgacagt gtacatcgat      2280
     gatatcctcg tagcaaatga cacagaaaaa gaacacgatg aaagcatcaa tctggtaata      2340
     attcaggcca gaaaacataa tgttaaattt aagttgtcaa aacttcaata caaacaaagg      2400
     tttgcgcatt tcactgggtt tattttttcg gaaaaaggaa ggcaaatcga cccggaaaga      2460
     acgagagcgt taactgcgat tgtagacccc aaaaataaaa aagaactaat gtcaataatg      2520
     gggatgttga actatgtaag acagtttttg cctaatctaa gtaatgaatc agctccttta      2580
     cgtgagttac ttaaaaaaga tgtagaattt ttgtggaccc cgtatcactc tgaagtgtta      2640
     gcaaaattaa aaaagagagt tgctgaagca cctattttaa gtaatttcga ttcgtctcaa      2700
     gaaatagtgt tacaatcaga tgcgtcaaaa tcaggaattg gagcatgttt gatgcagtta      2760
     ggtagaccag ttgcctattt ttctaaggct ctgacagaaa cacaaaccaa catctggggt      2820
     caaatcgaca aggaatttta tgcaataatt gcagcgcttg aaaaattcta ccaatttact      2880
     tatggtagag atgtaactgt tgaatgtgat cataaaccta tttcttattt ggttcataag      2940
     gacatawgta aaattaaatc tcaaagattg aagaaattca gacaaaggtt gtataatttc      3000
     aaagttaaga taatatttaa gccaggtcga aaaatgtaca tagctgatct gttgtctagg      3060
     caatatttgc aggatgtagc ggaagacgat ccagaagaaa tggagtatgt ccattccgtt      3120
     ctaactgaag aaaaaggtag tttaagtgat ttagaagagt tgaagcgaga aacagaaaat      3180
     gacccagctc tacaaattct aaaagaatac ctactcaatg gttggcctaa taataaaagt      3240
     gtttggccag ataatgtaaa accattttgg aaaattaaag aatttttgta tctagaagat      3300
     ggagtaattt ttaacgatga gagaattgtg gttccaagag caatgaaaga aaaatttctt      3360
     acgctgttgc atttaggtca ttttggtatt tcaaaaacta ttgcgaaagc cactgaattg      3420
     tattattggc caggtatgaa ttctgatgta acgaattttg taaaaaattg tccgatttgt      3480
     gaaaaatttt caatgaacaa tcgtaatgaa cccttgatgc ccatcgaatt accaaagaat      3540
     gtatttgaag ttttaggtat tgattttgct gagttaaatg gggagagttt ccttatttta      3600
     gtggattatc tgtctaaatg gttagaaata acaaaagtcc catctcacca tgctagaacg      3660
     gtgattaatg ctgtaaaacc aatctttgca acgcatggtt atcctaaaga aattatttgt      3720
     gataatgtcc ctttcggagc cagagaattt aaaaatttca ttgaagaaca taagggtaag      3780
     gtcctaacaa ccagcccaaa ttttcctcaa gcacatggaa tgattgaaat ttatgtaaaa      3840
     atagccaaag gaatgataaa gaaaagcaag gagtctaagg ttgatcttga tgaaatgctg      3900
     ttagaatata gaaacatgcc tttgacaggt atgaaagtca gtccagctca aattttaatg      3960
     agtcgtcagt tgagaagcaa gttacctgtt aatcctaatc agttaaaacc taaagtagtg      4020
     aatgcaagag aaaagtttct tgaaaagcaa gctaaagtta aagaacagtt tgataaatct      4080
     gctacacgat ctgaaactga gtttaaggcg ggtgacaatg ttgctgttcg aaaagataaa      4140
     atctggatta aaggaataat tgtaggtcca gcaggtaccc ctcgttcgta tattgttcaa      4200
     acagctcatg gtaatttgcg tagaaatact tttcatttaa aaaaatctca aactgaacgt      4260
     ttcaatccac ttttgcaaca aaatgacaac tatgattttc tggaggcaga attaaatgat      4320
     aatacccagt tacataatgt aattgaacct gataataatg tacccccaaa tgcacaagtt      4380
     gttaataatg ccctgcctaa cggtcaagcg caaaataatg aacctgaaaa tgtaattcca      4440
     cgtagaatta gacgtgtccc tgagtggcac aaagattatg ttatgtaaaa ctcagagtaa      4500
     attctgtttt gtaaccctct caagtgtaat ctgtgtattg tactaaaatt taaaaaaaaa      4560
     aaaattctca aaaagggaga tgtaaagtaa gatttaaatt ttttttctca aaaagggaga      4620
//
ID   Gypsy-17_BTa-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-188
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 691-691 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 188 BP; 70 A; 40 C; 29 G; 48 T; 1 other;
     tgttgtaatg tcmgaaagca tcatatagat atggcaacca tggatcatgt gaccaggtca        60
     aaccccactc caaaccacac acacacacaa gatgtccgac catgaaagtt cttgaataaa       120
     caggtgtaat ctcgtaaaag tctttattta tgtttcatca aaagtccttc aaaagtatag       180
     ataaaaca                                                                188
//
ID   Gypsy-17_CFl-I repbase;    DNA;    INV; 4727 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 19.04, Created)
DT   21-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4727
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1040-1040 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           100..1050
FT                 /product="Gypsy-17_CFl-I_1p"
FT                 /translation="MAKALNIEDAGTLEEXRKRISRFAEEHPEQIDAFEAF
FT                 AGEXGAQGAIPRLXIPTPANAEFRTPTAAEMAFXYDGKTINQIRKWGCHFD
FT                 GRDPAAFLERVGELRXAYGLTAPQLLQGLPELLKGDSLLWYRNYRDSWETW
FT                 DEFERDFRRQFLPRRXAATLRREIXGRHQQSTEKFAQYVTVMMTLMRRAGG
FT                 YSREQLXIIYENMNPAYKHYVRIDDVHSIEPQTRAAEFEDIXQEQKEAAKR
FT                 EKDXAKPAIAAVYNKKDCCWRCKQRGHTRAQCKRQAKKFCSQCGRDGVLTK
FT                 DCHPKAGNASGAGESTAANTTPSPA"
FT   CDS           join(1241..1525,1510..3468,3500..4096,4100..4726)
FT                 /product="Gypsy-17_CFl-I_2p"
FT                 /translation="MELPCQIGRRTIKHNFVILPHMEDKVIIGIDLQYRLR
FT                 LRIPPPPRYVRRLLPKCNTIGGLAVQTPEEREQLQQFLEKELXXFEKIHGP
FT                 TKKVEHSKGGTLIRLKDETPIKQRYRPRNPAMQAIIDKEVDEMMEQGVIEP
FT                 SHSPWSSPIVIVKKKDGKHRFCIDFRRVNDVTHKDAYPLPQITATLDKLRE
FT                 ARYLSTLDLKSGYWQVPLAKESRPITAFTVPGKGLYQFTVMPFGLHSAPAT
FT                 FQRLLDAVLGPDLEPHVFVYLDDIIVISKTFHEHLELLAETFRRLRNAQLR
FT                 LNPDKCKFCVDKLKYLGHIIDREGIRTDPEKVSAVADWPEPRTVKQIRQFI
FT                 GMASWYRRFIXSFSEIAAPLTRLTKKNARWTWGTEQAEAFRTLKSKLVSAP
FT                 VLACPDFTKRFFLQTDASTSGLGAVLTQQHEDGERVIAYASRTLNAAERNY
FT                 SATELECLAIVWGIRRMKSYLEGYAFIVITDHQALKWLQKLESPTGRLGRW
FT                 VFELQQYEFDIKYRRGVQNRVADALSRCPETCAIERKRCRWYDRVWEEVQQ
FT                 DPASRPEYKIKEGKLYRHILHTLNFKEISNNDQWKLCIPTPVRQKVLQKYH
FT                 DEPTAGHLGIAKTIARIAEGHYWPGMFRDIAKYVRNCKNCQSHKASQEKPP
FT                 GKLHATEIRRPWQQVCIDLVGPLPRSKRGHTWLLVMQDRFSKWTELAPLRR
FT                 ATADAVTQAVTNNIIXRHGKPESILSDNGTQLRSRSWRRDWRSATSSTSGR
FT                 EDQPLHKNNGESVRRQGPKNPWDEKINALQFAYNTAVHDATGYTPAFLNCG
FT                 RELISPVADDPPNNQTPAPETIKRQLEEANELVKINLARAFEKQKQYYDLR
FT                 RRAWKPHIGEWVWKKDHQLSKKADNFNAKLAPKYSGPYEVRRVISPVIVDL
FT                 RSRRGKWLKHVHIQDLKSAKTDSEDEDNNNNNSDNNDSEDDDSFEHRRSLR
FT                 FDMSSSEDILRAIEEYLGESSATEAQPAPPAPPPEPQXQPPPPRPPRVGTT
FT                 IQRSDRVNEQKRLMLLAQPPPPPGRRPIRPYEKPPKPLPKTAAEPPPEEIL
FT                 RPMGPLTAPPIKVEIEPGLIVEVPHFAVHVSRRTNRVLRRDAGFCVFPGTE
FT                 NSAISGKSTSSVHSXRSRRPTDRTTVRSTAPDIERSASNSGTNLRGGV"
XX
SQ   Sequence 4727 BP; 1413 A; 1254 C; 1256 G; 775 T; 29 other;
     ttggcgcccg aacagttgta aaaccgcatt acgagtagag cgtgcgagtg agtaatgaaa        60
     gcgtgaatat acagacttaa taaagagcag ttgattgtaa tggcgaaggc gctgaatata       120
     gaagacgcgg gtacwttgga ggaamttcgc aaacgaatta gccgattcgc ggaggaacat       180
     cccgagcaga tcgacgcgtt cgaggcattc gcgggggaak caggcgccca gggggcgata       240
     ccccggctgw caatcccgac accggcgaac gcggaatttm gaacacccac tgccgcggaa       300
     atggcgtttk cktacgacgg gaagactatc aaccagatcc gcaaatgggg atgccatttc       360
     gatggccgag accccgccgc gtttttggaa agggtggggg agttaaggma ggcatacggs       420
     ctcacagcac cgcagctctt gcaggggctc ccggaactgc tgaaagggga cagtttgttg       480
     tggtacagga attaccggga ctcgtgggaa acatgggacg aattcgaacg cgacttccgg       540
     aggcaatttt tgcctcgamg awacgcggcc acactacgkc gagaaatcmt ggggcggcac       600
     cagcaatcsa cggaaaaatt tgcacaatac gtcacggtga tgatgacact gatgcgtcgg       660
     gccggagggt actcgcgaga gcagctcgas attatttacg agaacatgaa cccggcgtat       720
     aaacattacg taagaatcga cgacgtgcat agcattgagc cacagactcg ggccgcggaa       780
     ttcgaggata taktgcagga acagaaagag gcagcaaaac gcgaaaaaga cascgcgaaa       840
     ccggctatag cagcggtgta caacaaaaaa gactgctgtt ggcggtgcaa gcaaaggggg       900
     cacacgcgcg cacagtgcaa aagacaagca aagaaatttt gctcccagtg tggtcgagac       960
     ggagtcttga cgaaagactg ccacccgaag gcgggaaacg cctccggggc cggggaaagc      1020
     acggccgcga acacaacccc gagccccgca taatattcac accgcgacca cacgtaatga      1080
     taaacatcca gggacaaaaa taccacgccc tggtggacgg aggctcggag atctccctga      1140
     tcagtcagat cacagccgaa gcattaaaca agaaagggtt cgaaaccaaa ggagagaggg      1200
     gggcctagca aacggatcca cgggcgaaac gctgggatac atggaactcc cgtgtcaaat      1260
     aggcagacgg acgatcaaac acaactttgt catcctccca cacatggagg acaaagtaat      1320
     catcgggatc gatctgcaat acagattacg cctaagaatt ccgccaccac cgagatatgt      1380
     gaggagacta ctaccaaagt gcaatacgat cggggggcta gccgtacaaa ctccggagga      1440
     aagggaacaa ttacagcagt tcctagagaa agaactacww saattcgaga aaatccacgg      1500
     gccaactaaa aaggtggaac actcataaga ttaaaggacg agacgccmat caagcaaaga      1560
     taccggccac gcaacccggc catgcaggcc atcatcgaca aagaggtgga cgaaatgatg      1620
     gaacaaggcg tgatcgaacc atcgcatagc ccgtggagct ctcccatcgt aatagtaaaa      1680
     aagaaagacg gcaagcaccg gttctgcata gatttccgcc gagtaaacga cgttacacac      1740
     aaagacgcgt acccgctacc gcaaattacc gcaacgctcg acaaattaag ggaggcgcgt      1800
     tacctgtcca cgctcgatct gaaaagcggt tactggcaag ttccgctcgc gaaagaaagc      1860
     cgaccaataa ccgcatttac cgttccgggg aagggattat atcaattcac agtgatgcca      1920
     ttcgggctgc attcggcacc agccacattt cagagattac tagatgcagt cctcgggccg      1980
     gacttagaac ctcacgtttt cgtttattta gacgatatta tcgtaatcag taagactttt      2040
     cacgaacacc tcgagctgct cgccgagacc ttccgtcgcc ttcgaaatgc acaactacgg      2100
     ctgaaccctg ataagtgcaa attttgcgta gataagttaa aatatctcgg gcacatcata      2160
     gacagggagg ggatccggac agatcccgaa aaagttagtg cagtggccga ctggccggaa      2220
     ccgcgaacgg tcaagcagat tcggcaattt atcgggatgg cctcgtggta tcggcgattc      2280
     attkcgagtt tctccgaaat agctgcaccg cttactcgac taactaaaaa gaacgctcgc      2340
     tggacatggg gaaccgaaca ggcggaggcg ttccgcacat taaaatcgaa actggtttcc      2400
     gctccagttc tggcctgccc agatttcacg aaacgttttt tcctacaaac cgacgcaagc      2460
     acctccggcc taggcgcagt tctaacgcag caacacgagg acggagaaag agtgatagcg      2520
     tacgcgagcc ggactttaaa cgcggcggaa cgaaactact ccgcgacmga gctcgaatgc      2580
     ctggcaatcg tctggggaat ccggcggatg aaaagttatc tggaaggcta tgccttcatc      2640
     gtcataaccg atcaccaggc cttaaaatgg ctacaaaagc tagaatctcc gaccggacga      2700
     ctcggacgct gggtattcga gctacagcaa tatgaattcg acatcaaata ccgtcggggg      2760
     gtacaaaacc gcgtggcaga cgcgctgtca cgatgcccgg agacctgcgc catcgaacgg      2820
     aagaggtgcc gctggtacga ccgagtgtgg gaagaagtac aacaggatcc agcctccaga      2880
     ccggaataca agatcaaaga aggaaagtta taccgacaca tcctgcacac attaaacttc      2940
     aaggagataa gcaacaacga ccaatggaaa ctatgcattc caactccggt gcggcaaaag      3000
     gtcctacaaa aataccacga cgaaccgaca gccggacatc tcggcattgc aaagacgatt      3060
     gcaaggattg ccgagggaca ttattggcca ggcatgttcc gggacatagc aaaatacgta      3120
     cggaactgca aaaattgcca gagccacaag gcatcacaag agaaaccgcc agggaagctm      3180
     cacgcgacgg aaataagaag accktggcag caagtctgca tcgacctggt cggtccacta      3240
     cccaggtcta aaagagggca tacatggcta ctagtcatgc aagaccgctt ttcgaaatgg      3300
     accgagctag caccgcttcg ccgagccacg gccgacgccg tcacacaagc agtgacaaac      3360
     aacatcatcm tgcggcatgg caagccagag agcatcctgt cggacaatgg gacgcaatta      3420
     cgatctcgca gctggagaag agactggagg agtgcaacat caagcacata accactccgg      3480
     catatgtacc ccattgtaat ccggtagaga ggaccaaccg ctccataaaa acaatggtga      3540
     gtcagtacgt cggcaaggac caaagaaccc ttgggacgag aagataaacg cattacaatt      3600
     cgcgtataac acggccgtac acgacgcaac gggatacacg ccagcattct taaactgcgg      3660
     ccgcgaatta atatcacctg tggccgacga cccgccgaac aatcaaacac cagctccaga      3720
     aacaattaag agacagctgg aagaagctaa cgagctcgtc aaaataaatc tcgccagagc      3780
     cttcgaaaaa cagaaacaat actacgattt gagaaggagg gcctggaaac cgcacattgg      3840
     cgagtgggtg tggaaaaaag atcaccaact gtccaaaaaa gcggataatt tcaacgcaaa      3900
     actcgcgccg aaatatagcg ggccctacga agtgcgtcgg gtaatatcgc ctgtgatcgt      3960
     ggatcttcgg agcaggcgag gaaagtggct gaaacacgtc catatacaag atttaaaatc      4020
     agcaaaaaca gactcagagg acgaggacaa caataataac aacagcgaca ataacgatag      4080
     cgaggatgac gacagctaat ttgaacaccg tagatcactt cgattcgaca tgtcgagcag      4140
     cgaagacatc ctgcgagcca tcgaggaata cctgggcgaa tcctccgcca ccgaagcgca      4200
     gcccgcgcct ccggctccgc caccagagcc gcaasagcag ccgccaccac cgcggccgcc      4260
     gagggtcgga acgaccatcc agaggtccga ccgggtcaac gagcagaagc ggctgatgct      4320
     cttggcccaa ccgccgccac cacctgggcg taggccgatc cggccttacg aaaagccgcc      4380
     gaaaccgctg ccgaagaccg cagccgaacc gccgccagaa gagatcctgc ggccgatggg      4440
     accsctgacc gcgccgccca tcaaggtgga gatcgagccc ggcctgatcg tcgaggtgcc      4500
     gcacttcgcg gtacatgtta gccggcgtac aaaccgcgta ctccgcaggg acgctggatt      4560
     ctgcgttttt ccggggacgg aaaactccgc tataagcgga aaatcaacta gctccgtcca      4620
     ttccagwcga tccagacgtc cgaccgaccg aacaaccgtc cgatccaccg ctccggacat      4680
     cgagcgtagt gcctcgaatt caggcacaaa tctaaggggg ggggtga                    4727
//
ID   Gypsy-17_CFl-LTR repbase;    DNA;    INV; 1251 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 19.04, Created)
DT   21-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1251
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1041-1041 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1251 BP; 334 A; 393 C; 264 G; 248 T; 12 other;
     tgtaacgatg caccccgtgc acccccttag atgcatcgta tacccggcat gcgatccgcc        60
     ggaagctgcc gcccggcaga acacccgccg ggcataggca ggggcgcggt gcgcccacat       120
     tttttaaact actttaactc tttcggaaaa gggagccgaa taccgccgag tgttgccgac       180
     gtgccccgat ccggcgaccg gcgaaaaacc cgcgctcggc gcgcaccccg aacccctccg       240
     agcgggcccc cgaccgtacc gctttccgta acccgttcgg aaggggtaat accgccgcgc       300
     gccgacgcgg gcaattaagc cggtataaaa cgggcacgtt cggcacacta attacctttt       360
     tccgatccgc tcacgacaag tgaagcagct ccgaaaccta gaccgctccg aaattaaaat       420
     ctmgcttcga ggaaaggagg tagagcgaac tcttcctcca tcgagcactc tcgatccwca       480
     gagcmagatc acttccatcc gatcttcata aatccgaccg aggaacagga atcagagtgm       540
     actccgattc cgtcgagagw tctcgaccac cggtctaaaa tccgaccgcc agacgcwagt       600
     gcatctttca cgaggcagag aggagagcta cctcggacga gtcattctcg tcggcactgc       660
     gttcccgaaa actcatccta ttgcmgggga ttacckattc aaattccgcg taaacgcatt       720
     tattaaattc cgcgaaatat agcgcgcgtt cctgcaccag ccagaaagaa gcckactaga       780
     ccgattttcc cgacgcgcgt acataaaaac atacgcgcgc gtcaacggtc attgaccgcg       840
     ccggaatcac aacacgcgcc gtawatacca tttaaaggta tcgatacgat ccgaaacatc       900
     ttatatccga gatacacacs attgtatact atcgtaccag ctttaataaa ttctagctcc       960
     ttatcgcggc acgctacgac gtgcatctgc gactcaaaaa aattgcataa aataacgact      1020
     tagcgcctcg cgccgaatat cgcgctcacg cataattaac gcgttcacac ataatacacg      1080
     cgctcacaca cacaacacgc gcacacacac acacactgta ttwcatacac acaataaact      1140
     tgtttatttt gttatcttac acacgctctc gctcatttgc aaaacctacc gaacccggat      1200
     ttccgattcc cgctatccga cgacgaatct cgcggaaatc actccgtgac a               1251
//
ID   Gypsy-17_CQ-I repbase;    DNA;    INV; 4144 BP.
XX
AC   AAWU01030073;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_CQ_;
KW   Gypsy-17_CQ-LTR; Gypsy-17_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4144
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 413-413 (2011).
XX
DR   Genome; AAWU01030073; Positions    7242    3099.
XX
CC   Positions [3089-3547] - Integrase core
CC   'CCAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..1253
FT                 /product="Gypsy-17_CQ-I_2p"
FT                 /translation="MQSAFTVEPFDRHKMKWSRWVERLEGVFLLFGIQDGA
FT                 KRPMLLHYMGAETYDAISDKLAPVKPQTKTYQEIVELLEEHFNPEPLEILE
FT                 NFRFKSRKQCDERAEESVSDYLTALRKLAITCNFGNYLDTALRNQFVFGIK
FT                 DRGIQSRLLEVRGLTLARARDIAVSMEASAKGGQEIHARQSRPEMNLVEHP
FT                 PTKPAKGKAYEKSAGKKSEEKKTCYRCGSAEHFANECKHAHTVCNFCKVKG
FT                 HLQSVCQKKSAGQKGRRSDAHQVEESAGADRKCREKVLVEEICGVSDAADF
FT                 NNKVDKFWLELSVNSAKVKFEIDSGSPVTVMSVWDQEKYFPTVELSSPDTG
FT                 FVSYSGSQSNCAGCVPSGWTTVVKATNCCCMLRRTKSTLCWVEVG"
FT   CDS           1157..4111
FT                 /product="Gypsy-17_CQ-I_1p"
FT                 /translation="MCAVRVDYGGESHELLLYVAKNEKHPLLGRSWMKVLK
FT                 IDVVEFYENVHTVVENSAAAVQTLIERYGSVCEKSMGKIEGLTAKLQLKPD
FT                 ARPVYLRARPVPFSIKEAVEKEIKGLVESGVLVKVNHSAWATPVVPVLKLN
FT                 NRVRLCGDYKITVNPNVVVDDHPLPTVEELFANVAGGDMFTKIDLSQAYLQ
FT                 LEVDPEDQEILTLSTHLGLFRPTRLMYGVSPAPAIWQRLMEEVVNGIPGVT
FT                 VFLDDIRITGPNDRVHLERLEEVLKRLSQYNMRINLEKCQFFADRIEYCGY
FT                 LIDRDGIHKVRKKIDAVQDMPVPENKDQVRSFVGLVNYYGRFFPHLSTTIY
FT                 PLNCLLRNDVPFRWTKECDEAFKKVKDEMQSDRFLVHYSTELPLVLATDAS
FT                 PYGVGAVLSHIMPDGTERPIMYASKTLNETQRRYKQIDREAYAIWLVTDNE
FT                 PVKQIFSETKGLPAMSALQMQHYAAYLASFRYEIKFRPTREHYNADAFSRL
FT                 PISAQTPEYVVEEVDLLEVNMIETLPLTVGDLAKSTAADPTVKVLLQGLKN
FT                 GKTVEARDRFGIDQNEFALQQGCIMRGIRVYVPPELRQNVLAELHSTHFGS
FT                 TRLKSLARGYVWWERIDKDIEELIRNCAACQVTRADPAKVPLHCWETPKGP
FT                 FDRVHVDFAGPFMGTYFIVFVDAYSKWPEVKILRDISTSTTIHACREFFAA
FT                 YGIPAVLVSDHGVQFTSAEFQHFLKQNGIFHKMGAPYHPATNGEAERFIQT
FT                 FKGKMKALNCDKSRMHAELCNILLSYRKTIHPATGKSPSMMLFNRQIRSRL
FT                 DLMVPNAAVVEEKPEVAVRSLPEGARVAARDFLSKDKWKYGHVAEKLGKLH
FT                 YNIKLDDGRLWKRHIDQLREVGANLPSGRPEIPAECFEPDIVPVAPRTNPV
FT                 QHTPQAAAAVPTPIAEPQSSRSAAATPKPPEPPAVPKPKSQGPLAVPKLKP
FT                 TNAAGRSEANNQQSPRRSTRVIKPPRRLDL"
XX
SQ   Sequence 4144 BP; 1031 A; 1068 C; 1261 G; 784 T; 0 other;
     gttttggcga cgatggcgga cgaaaaccta cctccgggta acgatcaagg tgatggccag        60
     gccggggcca agctccggtg ccaattgcga tgcaatcggc gttcacagtc gagcctttcg       120
     accgtcacaa aatgaaatgg tctcgctggg tggaacgctt ggagggagta tttcttttgt       180
     tcggcatcca agatggcgcg aagcggccga tgctgctgca ctacatgggt gcggaaacgt       240
     acgacgccat ttcggataaa cttgcgccgg tgaagccgca gacgaagacc taccaggaga       300
     tcgtggaact gctggaggaa cacttcaacc cggagcccct tgaaatcctc gagaattttc       360
     gcttcaagtc tcggaagcag tgcgacgaac gtgcggagga atcagtttct gattacctca       420
     cggcgttgag gaagttggcc ataacctgca attttggcaa ctacctggac acagcgctac       480
     ggaaccagtt cgtctttggg atcaaggacc ggggaatcca gtcgcggctg ctggaagtgc       540
     gcggcctgac tctggcccga gctcgtgata ttgccgtgtc aatggaggcg tcggcaaagg       600
     gtggacagga gatccacgcg cgtcagagtc ggccggagat gaatctggtg gagcatccac       660
     cgacaaaacc ggcgaaggga aaggcgtacg aaaagagtgc gggcaagaag agcgaggaga       720
     agaaaacctg ctaccgctgc ggaagtgcgg agcatttcgc aaacgagtgc aagcacgccc       780
     acaccgtctg caacttctgc aaggtcaagg gtcacctgca gagtgtgtgc cagaagaaaa       840
     gtgctggcca gaagggccga agaagtgatg ctcaccaggt ggaggaaagt gcgggcgcag       900
     atagaaagtg cagagaaaaa gtactagtgg aggagatctg tggagtttcc gacgctgccg       960
     atttcaacaa caaagtggac aaattctggc tggaactgtc cgtgaacagt gcgaaagtga      1020
     agtttgaaat cgacagcggc tctccggtta cggttatgag tgtgtgggac caagaaaagt      1080
     actttcccac ggtggaattg agttccccgg acacgggctt cgtgagttac agtggatcgc      1140
     aatcgaattg tgcgggatgt gtgccgtccg ggtggactac ggtggtgaaa gccacgaact      1200
     gctgctgtat gttgcgaaga acgaaaagca ccctctgctg ggtcgaagtt ggatgaaagt      1260
     gctaaaaatc gacgtggtcg agttctacga gaacgtccac acagtggttg aaaacagcgc      1320
     cgccgcggtg cagacgctca ttgagcgcta cggaagtgtc tgtgagaagt cgatggggaa      1380
     gatcgaaggc ctcacagcga agttgcagct gaaaccggat gcgcgtccgg tgtacctgcg      1440
     tgcgcggccg gtccctttct cgatcaagga ggcggtcgaa aaggagatca agggcctggt      1500
     ggaaagcggt gtgctggtga aggtgaacca cagtgcgtgg gccacgccgg ttgtcccagt      1560
     gctgaagttg aacaaccgag tgcgactttg cggggactac aagatcactg tcaacccgaa      1620
     cgtggtggtc gatgaccatc ccctgccaac agtggaagag ctgttcgcaa acgtggccgg      1680
     cggggacatg ttcacgaaaa ttgatctctc gcaagcctac ctgcagctgg aggtcgaccc      1740
     ggaggatcag gagattctca cgctgagcac gcatctgggg ctgtttaggc cgacaaggct      1800
     gatgtacggc gtcagcccgg cgccggcgat ctggcaacgc ttgatggagg aggtggtgaa      1860
     cgggattcca ggtgtgaccg tcttcctaga cgacatccgc attacgggac cgaacgatcg      1920
     ggtccacctt gagcgcctcg aagaggtgct gaaacgactg agccagtaca acatgcggat      1980
     caacctggag aagtgccagt tcttcgccga ccgaatcgag tactgtggct acttgattga      2040
     ccgcgacgga atccacaagg tgcggaagaa gatcgatgca gtgcaagaca tgcccgtgcc      2100
     ggagaacaag gatcaagtcc gttcgttcgt tggattggtc aattattacg gtcggttttt      2160
     cccacacctg agcacgacca tctacccgtt gaactgtctg ctgcggaacg acgtgccgtt      2220
     ccgctggacg aaggagtgcg acgaagcgtt caagaaagtg aaggacgaga tgcagtcaga      2280
     ccgcttcttg gtgcactaca gtacggagtt gccactggtc ctggcaacag acgcttcgcc      2340
     gtacggggtc ggtgcagtac taagccacat catgccagac ggtacagaac gcccaatcat      2400
     gtacgcgtcg aagacgctga acgagacgca gcgcaggtac aagcagatcg atcgtgaggc      2460
     gtacgcgatc tggcttgtca cggacaacga gccagtgaag cagattttct cggagaccaa      2520
     gggtctgccg gcgatgtcag cgttacagat gcagcactac gctgcgtacc ttgcttcgtt      2580
     ccggtacgag atcaagtttc gtccgacgag ggagcactac aacgctgacg ccttttctcg      2640
     attgccgatc agcgcacaaa cacccgagta cgtcgtcgag gaagttgact tgctggaggt      2700
     caacatgatc gagacgctgc cgctgacggt cggagatttg gcgaagtcga ctgctgcaga      2760
     tccgacagtg aaggtgctgc tgcaaggtct caagaacggg aaaacagtcg aagcacgtga      2820
     tcgttttggt atcgaccaga acgagtttgc gctacaacaa gggtgcatca tgcgcggaat      2880
     ccgggtgtac gtcccaccag agctgcggca gaacgtgctc gcggagctgc actctacaca      2940
     ctttgggagc acacgcttga agtcgctcgc cagaggatac gtgtggtggg agcggatcga      3000
     caaggacatc gaggagctga tccggaactg cgcggcctgt caggtgacac gggccgatcc      3060
     tgcgaaagtg cctctacact gctgggaaac gccgaaggga ccattcgaca gagtgcacgt      3120
     ggatttcgct ggaccattta tgggtacgta cttcatcgta tttgttgacg cgtactccaa      3180
     gtggccagaa gtgaagatct tgcgagacat ctctacgagt acgaccatcc acgcctgtcg      3240
     tgaattcttt gctgcctacg ggatacctgc cgtgctcgtg agcgaccatg gagtgcaatt      3300
     cacgtcggcc gagtttcagc acttcctgaa acaaaatgga atcttccaca agatgggcgc      3360
     accgtaccat ccggcaacca acggtgaggc agagagattc atccaaacgt tcaagggcaa      3420
     gatgaaggct ctcaactgcg acaagtcgag aatgcacgcg gaactgtgca acatcctact      3480
     cagttaccgc aagaccatac atcctgccac cggaaaatcg ccttcgatga tgctgttcaa      3540
     caggcagatc cggtctcgac tggacctgat ggtcccgaac gctgcagtgg tggaagaaaa      3600
     gcccgaagta gccgttcgat cgcttcccga gggggcgaga gttgctgctc gtgacttcct      3660
     gagcaaggac aagtggaagt acggtcacgt tgctgaaaag ctgggcaaac ttcactacaa      3720
     catcaagctg gacgacggtc gactctggaa gcgccacatc gaccagctac gagaagtcgg      3780
     agcgaacctg ccgtctggac gtcctgagat accagctgag tgtttcgagc cagacatcgt      3840
     gccagttgct ccacgaacca atccagtaca acacacgcca caagctgctg ccgctgtacc      3900
     tacaccgatt gctgaaccgc aatcatcgcg gagtgctgcg gctactccca aaccgccgga      3960
     accacctgcg gtaccgaagc cgaaatcgca aggaccactt gcggtgccga agctgaaacc      4020
     gacgaacgct gctggtagat ccgaggcaaa caaccagcaa tcaccgcgac gatcgacaag      4080
     agtcatcaag ccgcctcgga gactggacct gtagagagaa gtacaaaccc aaggggggaa      4140
     gagt                                                                   4144
//
ID   Gypsy-17_CQ-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   AAWU01030073;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_CQ_;
KW   Gypsy-17_CQ-I; Gypsy-17_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-164
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 414-414 (2011).
XX
DR   Genome; AAWU01030073; Positions    3098    2935.
XX
SQ   Sequence 164 BP; 37 A; 48 C; 29 G; 50 T; 0 other;
     tgttatagtt ccgctttaga gtgtaccttg ccaagctccc tttccctcta ctttgggtaa        60
     taccatttag ttgtgtaaga acctcgctag aataaacacg cgtcgcatcg cgctctctcc       120
     aacaacgtgc tttctttatt ggccacaacc tcgcggctac aaca                        164
//
ID   Gypsy-17_DAn-I repbase;    DNA;    INV; 5556 BP.
XX
AC   AAPP01018957;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DAn_;
KW   Gypsy-17_DAn-LTR; Gypsy-17_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5556
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018957; Positions   84658   90213.
XX
CC   Positions [4635-5126] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           857..2296
FT                 /product="Gypsy-17_DAn-I_2p"
FT                 /translation="MGVDHSDNEEAGGSSHFCILCNSRIPDKELYKTKCGH
FT                 GFHRKCMSTHLKSKKTCPTCKATFSGEPIARSDSFIAQNTRRQKLISSQTE
FT                 GESRGSESMEKERQSQERRGEDVQSMVLDAVKSMQHELLTQLTEKMSLMIQ
FT                 SNLAARISQQPLEGATDPSPSLDQLLGIDAGQVNVRQSRTQANISPRSNAS
FT                 ELSQRPDKVAHIMNGWKLRFSGDPGGISVDNFIYRVHALTGQTLDSKFDVM
FT                 CGNASALFEGKANDFYWRYHKSVPSVKWTELCDALRRQFRDTRTDVDIREL
FT                 IRDRKQREKESFDSFYDAVVQLTDSLDCPLEDKSLIEILRRNLRAEIRHEI
FT                 LNIPTESISKLREICRRRECFLEEVKRDQIYKKGTPFKSNISELLQVEHKE
FT                 SESEFFEDEEGVIEAMSLICWNCRKEGHRYQDCTAPRKVFCYGCGARNTYK
FT                 PACLKCQKNKLLNTQAARSRCVQRTQSTNTESEQL"
FT   CDS           2197..4554
FT                 /product="Gypsy-17_DAn-I_1p"
FT                 /translation="MPKVPKKQAAEHPSRSFSVCSTDSVDKYGKRATISPV
FT                 MDSFKTDVGPVEGWHQKINIFRNISNKQAYLKKFDAKNKSRNTKRLKRFWK
FT                 VTKDLCALRSNNGDGRPYTIVKILDRNIKGLMDTGASMSCIGGQFAQEVMG
FT                 SEVPIHRVFNNVSTADGSKLNIIGRLSTNIEYNGQIKAIQLYIVPSLKQNL
FT                 YLGVDFWKLFDLLPPNIQISELSAHNLTQDQKETLQGVVDQFPSFASAGLG
FT                 KTNLLSHHIDVGEGKPIKQRHFPVSPAVEKLLYGEVDRMLELGVVEESDSA
FT                 WSSPVVLVQKPGKVRLCLDSRKVNAMTVKDAYPLPQIDGILSRLPKAMFIS
FT                 SLDLKDAFWQIPLDPASRDKTAFTIPGRPLYQFKVMPFGLCNAGQTMSRLM
FT                 DKVIPASLRNEVFIYLDDLLLVSDTFENHIRVLKTVADCIRSAGLTINVQK
FT                 SHFCVQHVKYLGHVIGEGEIRTDPEKVAAIEKFPLPKTLKSLRSFLGMAGW
FT                 YRKFIDNFATVAAPLTDLLRAKRKFTMTEKGRQAFIELKRRLCTAPVLRSP
FT                 DFTKPFYIQCDASKSGVGGVLVQKTEQGDEYPIAFVSKKLNKAQRNYSVTE
FT                 QECLAAIVGVKRFRPYVEGQDFTIITDHASLKWLMGQSDLSSRLARWALKL
FT                 QGFKFKIEHRRGSLNVVPDALSRVNEDEIASIDASHGLLVDVASEHFQGPE
FT                 YLSLVDSVRANSAKLPDLKVVDNLVYRRSEHATGEPLHDVYIWKLWVPLQL
FT                 VGNVLKNAHDHPLAAHGGVHKTLERVRRYYYWPVW"
XX
SQ   Sequence 5556 BP; 1698 A; 1112 C; 1301 G; 1445 T; 0 other;
     ggaataataa taagtaatat ctgaataatc atggcgccca acgtggggct tgactgtaca        60
     gtgaagctca ctcaatagcg aaacaaacaa acctttcttt tcatttccat ttctataaat       120
     ttcctagtca gcagtgtcaa ctttcagtcg cattggaatg cagtttttat attttcagaa       180
     agaaaaaaat aactgaccac gaagaaagaa ttaatacagc agtctccttt aattgtgttc       240
     atccacaata ggtaagcgct ttggaattgg ccaattacga tcaattatta gtttggctaa       300
     ccgcgcttga actagcgagg aataggtgaa gtagctaaag gtctagtaag tcgagaatgc       360
     aggattacag agctaatgct tgcgagcaag agtctggccg caatttcgga agcgaaatct       420
     ttaggcagtt tctagtattg aaactttatt gaggctaagt atgcagtgct tggaagtaca       480
     atctcaaaga taactaataa tattagagat tggccacgct ggttacgaag gtcacataag       540
     taaagcagct tatgtagccg cttgatgagt tttaattttt tttgctgcgc ctttttctcg       600
     tatctttttc agataatttt cttttcctct cacaaaaaaa aaaaatagga aagaccttcg       660
     acaatcagct cttggttagg catggagtta atttttttta tcgtaatata tatatttttt       720
     tgtggacata atctagtggc ttatacctta taaatattca gaattgtggt tttaagtggc       780
     agcgctaagc acgagatctt caaattgaat aacaatagtt tcgaaaataa acaacacata       840
     ataataatca taggatatgg gtgtagatca ctcagataac gaagaagctg gaggatcatc       900
     tcatttttgt attttatgca attcgcgaat tcctgacaaa gagttataca aaacgaaatg       960
     tgggcacggg tttcatagaa agtgtatgag cacacatcta aagagcaaga aaacttgccc      1020
     tacctgcaaa gcgactttct ctggggaacc tattgcaaga tcagatagct ttattgcaca      1080
     aaatacaaga aggcaaaaac ttataagttc gcaaacagaa ggcgaaagtc ggggatcaga      1140
     aagtatggag aaagaacggc agagccaaga gcgaaggggt gaggatgtac aaagtatggt      1200
     attagatgct gttaaaagta tgcaacacga gttgctaacc caactaacag agaaaatgtc      1260
     cctcatgatc cagtcgaacc tagccgccag aatttcccaa cagccacttg agggggcgac      1320
     agacccaagt ccgtcacttg atcagcttct tggcatagat gctggccagg tgaatgttag      1380
     gcaaagtcga acgcaggcta acatctctcc tcggtcaaac gcctcagaac tttcacaaag      1440
     gccagataag gtggcgcata taatgaacgg atggaaactt cggtttagtg gagacccagg      1500
     aggcattagc gtagataatt ttatttatag ggtacacgcg ttaaccggtc aaaccctcga      1560
     ttcaaagttc gatgttatgt gtggcaacgc aagtgctttg tttgagggta aagccaatga      1620
     cttctactgg cgatatcaca aatcggtgcc atccgttaag tggaccgaat tgtgtgacgc      1680
     acttcgccgt cagttcaggg atactagaac ggatgttgat attcgagaat taattcggga      1740
     tcgcaaacag agagaaaaag agagtttcga ctcgttttat gacgccgtgg ttcaattaac      1800
     ggacagctta gactgccctt tagaggataa atctttaata gagattttac ggcgaaattt      1860
     gcgagctgag atcagacacg aaattttaaa tatcccaact gagtcgatct caaagcttcg      1920
     cgaaatatgt agaaggagag aatgctttct agaggaagta aaacgggatc agatatataa      1980
     aaagggtacc ccattcaaaa gtaacatctc agaacttctt caagttgagc ataaagagtc      2040
     tgaatcggaa ttcttcgagg acgaagaggg ggtcatcgaa gcaatgtcat taatatgctg      2100
     gaactgtagg aaggagggcc acaggtacca ggattgcacg gctcctcgta aagtgttttg      2160
     ttacggatgt ggggcacgca acacatataa gccggcatgc ctaaagtgcc aaaaaaacaa      2220
     gctgctgaac acccaagccg ctcgttctcg gtgtgttcaa cggactcagt cgacaaatac      2280
     ggaaagcgag caactataag tcctgtcatg gactcattca aaactgatgt tggtcctgta      2340
     gagggatggc atcagaaaat caatattttt aggaacatta gcaataaaca agcttatctt      2400
     aagaaatttg atgctaaaaa taagtcacgg aataccaaga gattaaaaag attctggaaa      2460
     gtcactaagg atttgtgcgc gcttcgcagc aataatggcg acggtcgtcc gtatactatt      2520
     gtaaaaatcc tggatcggaa tatcaaaggg cttatggaca cgggcgcatc tatgagctgt      2580
     attggggggc agtttgcaca ggaagttatg gggagcgaag ttcctatcca cagagtcttt      2640
     aataatgttt ctacagcaga tggaagtaag ctaaatatta taggtcgatt aagcacaaat      2700
     atagaataca acggtcagat taaggcgatt cagttataca tagttccatc tttaaaacaa      2760
     aacctctact taggcgtaga tttttggaaa ctctttgact tactacctcc aaatattcaa      2820
     atttcggagc taagtgctca caatcttacc caggaccaaa aggaaacctt gcagggagta      2880
     gtggatcagt ttccatcatt tgcctccgct ggattgggca aaacaaatct tttatcgcac      2940
     catatcgatg tgggcgaagg caagcccata aagcaacggc atttccccgt atcgccagct      3000
     gtagagaagc tgttatatgg tgaagtcgat cgaatgctgg aactgggggt tgtagaagaa      3060
     tcagacagcg cctggtcctc tccagtggtt ctggtgcaga aacctggtaa ggtcagactt      3120
     tgcctcgaca gcaggaaagt gaacgccatg accgtgaagg atgcgtatcc gcttccacag      3180
     atagatggta ttctgagtcg cttgccaaaa gcaatgttta taagcagtct cgacttaaag      3240
     gatgcattct ggcaaattcc gctagatcca gcgtccaggg ataagactgc gtttacgatc      3300
     ccaggtcgcc cactttacca atttaaggta atgccgtttg gcttgtgtaa tgccggacaa      3360
     acaatgtcgc gactcatgga caaagttatt ccggcgtcac tgcgaaatga ggtgttcatc      3420
     tacctcgacg atctgcttct agtttcggac acctttgaaa accacataag ggttctaaag      3480
     acagtggcgg actgcatccg gtctgccggg ttgacaatta atgttcagaa aagccatttc      3540
     tgcgttcagc acgtcaaata tttagggcat gtgatcgggg agggcgaaat acgcacagat      3600
     cccgaaaaag tggcagcgat tgaaaagttt cctctgccga aaaccttgaa gagtctgaga      3660
     agttttctcg gaatggcggg ttggtaccgt aaattcattg acaattttgc cactgtagcc      3720
     gctcctctta ctgatttact cagagccaaa aggaaattca caatgaccga aaaaggacgt      3780
     caggcattca ttgagctaaa gcgcaggtta tgtactgcgc ccgtccttcg aagcccagat      3840
     tttactaagc ccttttacat ccagtgcgat gccagcaaaa gtggcgtagg tggagttttg      3900
     gtccaaaaaa cggaacaggg tgacgaatac ccgatcgcat tcgtttctaa aaaacttaat      3960
     aaggcacaaa gaaactattc agtaactgaa caagagtgtt tggcagcaat agtaggcgtg      4020
     aaaagatttc gtccctatgt agaaggccag gatttcacaa taattacgga ccatgcatcc      4080
     ctaaagtggt taatgggcca atcggacctt agttcccgct tagcgagatg ggctcttaaa      4140
     ctgcagggat ttaaatttaa gattgagcat cgccgaggat cacttaacgt tgttccagat      4200
     gctctgtcaa gggtcaacga agacgaaata gcgagcattg atgcttcgca tgggttgctg      4260
     gtggatgtag cttccgaaca ttttcaaggc ccagaatatt taagcctggt agacagtgtc      4320
     agggccaaca gtgcgaagct tcccgacttg aaggttgtgg ataacttggt ttaccgacgc      4380
     tcagagcacg caacaggcga gccccttcat gatgtctata tctggaaact gtgggtacca      4440
     ttacagctgg tgggcaatgt tctgaaaaat gcacacgatc acccacttgc tgctcatgga      4500
     ggcgtgcata agacgctaga aagagtacgc cgctactatt actggccggt ttggtgagcg      4560
     atgttaagac ttatgtcagt aattgcgatg catgcaaggc tacaaaagct cccaactgtc      4620
     cgttaagacc tcccatggga aaagctccag aatcgcaacg attctttcag cgtttataca      4680
     tcgattttct gggaccatat ccgcggtcgc gtagtggaaa catcgcaatt ttcatagttc      4740
     tagatcattt ttcaaaattt gtttttttaa aagccataaa gaaaatggag tcgactgtcg      4800
     tagtgaaata catgaaagaa gaattgttcc acttgttcgg agtgccagag ttaattgttt      4860
     cggataacgg cacacaattt agggctgaat tgtttcaaaa gttgctgagg gaacaccgaa      4920
     ttacccataa gctcacagcc attcatgccc ctcaagcaaa tgcgtcagag cgggtgaata      4980
     gatcaataat aacggctata cgtgcatatg tagatactac ccaaaaagat tgggatgtga      5040
     atctaagcag catttgctgc gccctcaggt cagctaccca ctcatccctc gggacatcgc      5100
     cctactatat ggtgtttggc caacacatgg ttacatctgg aggtacctac gctttgttaa      5160
     ggtcgctaca atcattacaa gacagaggaa tagcattcac taagtcagac tcattagagc      5220
     tagctcataa taaggcagtt atgctgtcag aaaaacgaga tggtgttaac agagatcgct      5280
     ataatcttag atcacgtgag atttcctact ccatcgggca agaagttttt cggagaaatt      5340
     tcaaacaaag tagcttccag acaggatata atgccaaatt aggtcctgct tttgtaaagg      5400
     cacgggtccg ccagaagtta ggaaattcgt actacgatat tgaggatctg caaggtaagc      5460
     tggttggacg ctaccatgca aaggatctgc ggcaatagtc ctggcgggat cagccttgtg      5520
     gggtttaccc caagtctgat gttagcgggg gggtgt                                5556
//
ID   Gypsy-17_DAn-LTR repbase;    DNA;    INV; 1923 BP.
XX
AC   AAPP01018957;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DAn_;
KW   Gypsy-17_DAn-LTR; Gypsy-17_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1923
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018957; Positions   82735   84657.
XX
SQ   Sequence 1923 BP; 677 A; 345 C; 389 G; 512 T; 0 other;
     tgtagtgggg tttaaaaccg cagaccctgt gcttactagt gccacctagc gggcggtacg        60
     ggtggtaaat tggcaacatt agacgtaggg attaggcagg actgcatttg ctttagcgtt       120
     ttaggagtag cagaagtcta gccctggcag taagccatct tgtagaaact gagatcgaga       180
     atctcgtgct ttcttttgga atcagactct ggaccggcac ggatgtacgt cagatccaga       240
     tccatccaca aatttctggt tgaagctatc gccgagtaac cccagctttg gagccgaagg       300
     aggcgagcat aggaacgcta attcctgccc ttagagggca gctagattcc ccataccgac       360
     cagatccaga actccgccag tcaaccttat ctacgcccag cccatcatcc cagcccagcc       420
     catatcagca tcaattggtt tgcggtgttg ttttcgtagg gtgatcgtca gatacaagaa       480
     aaagagcaga aaaaagctcg tgtctggttt agtctgcgcg ttgctgatag acagctaaga       540
     actccgttcg attacccaaa caaataccca aaattaggga acgtcgcgat gatggcaaag       600
     gtgtcgtcca tgccaagtgt catcaaaacc acttgaagtc tttagttaat ctaaatataa       660
     agtataatct aaaaacctag tttagaaaat ttaaaatcgg tacaaagtta aaatcggtta       720
     aaaaaatgaa gttaaaacca caagctaaaa ttgtgtaaaa atatacaaat taaaaaggaa       780
     aaaaaaaaaa aaaaaaagga atagatcaaa aacgggtgtg atgtaaatta gaacagatga       840
     ttattagaaa cgagtaacaa gttgaattag aagagggcga aattaaataa aaacgccgat       900
     aagacaaatt cggttaagtc tcgatgtggg tgtgtgtgct gaaactttta gtcttcgcga       960
     gtcgctttgg acttgcattt atttacagac ttcttacgac acctccaatt tggaagcgct      1020
     ttcaacggtg gagtatatca ggtgagcaaa gtctacccaa tatttacctt tttcgtctgc      1080
     atatgcatgt catttcgatt cagaaccgaa attggaaatc aaatgaaatg aaagtaaaac      1140
     gttgaaaata aagttaactt gttaggcact attaaaaaaa aaaaaaaaaa ggagaagata      1200
     aaattaaaaa ttaaaaagaa aatatttgaa aataatgaat aagaaattgc atcacatacg      1260
     tttgatttaa aatatttgca tttaataata aatattacac ttagcaaaat ataaatatat      1320
     aaataataca ttaagaaatc cttcctaaat gcaaatgcaa attcttaatg cctaaatgcg      1380
     aatataaatt aattatcagt ggttataaga aatagaattt tgtaaaacag tagttaataa      1440
     gaaatgaagt aatcttttag gctttaactc aagaaaaaaa aagtaaacaa aacgagatgt      1500
     acatctttat gtttaataaa tacgctatta taatgaaaga gtagaaaacc ctgttgtaac      1560
     tccatgccga tcacagagcc gtcgtagggt tataaaataa aaggggcctg ttgcaggatc      1620
     gttgggaaaa cgcactggcc atggtagggt gggctgaaga cacccctttt acatctcggg      1680
     gtgcgcaaag tgagagtact atcctagttc ttgtctgtcc gtttgttaag ctatctcttg      1740
     tccggccgaa tttggctcgt ttttgcacgc aaataaaact gatttatccc agataactat      1800
     gagcacctgt aggctaatac tactgaagaa caccactcca ttcgctgacg agctagagcc      1860
     ggaatttaat gcgtgccgtg ttattagctt gcaaagaaca ccagctctac gttattcgtt      1920
     aca                                                                    1923
//
ID   Gypsy-17_DAzt-I repbase;    DNA;    INV; 5821 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5821
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 798-798 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           221..1162
FT                 /product="Gypsy-17_DAzt-I_1p"
FT                 /translation="MLLSEIHLNQALKSIRQIPPYDGSQEWLSSFINRIEY
FT                 ISGLYPTDDIRQQSILYGATEGQLCIRAQLLSQSLQPNSWTDLKAALTRKF
FT                 NNHTPYETLLQQLHDTKFSGNIRKFVEELEIKSTVIICKLNLETSSENKTI
FT                 FKNALANAIRHTIEDSLPNKLFITLAKKDISTIANLEKSAQELGIYENFVT
FT                 DNKNNEHSKNVNNNRRNVGTYYPRYSSYDSNNQNLNTFRTNHGSNRNNLGN
FT                 NASNNTGMLNEFRNSLNQGRAQNPTNYQINRNQAGGSAPNQPVKRSRESQS
FT                 GHMKMDVNFQQSASENPEEDHI"
FT   CDS           1084..4473
FT                 /product="Gypsy-17_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="GKPKWTYENGCKFSAECLGEPRGRPYIEIILNNKKLR
FT                 GIADSGSSINIIKENYTKSKVDSDNLTVHTINGPVRLTKSITRNATKNCPT
FT                 KQKFYIHNFSDNYDILLGREYLMASKAIIDYRNETVTIGERSYPIIQCGEV
FT                 IADGKTAHKGDKPSSKKDIITPKCLDPSLEGEQYFTSALENELRECNQLRL
FT                 EHLNDEEREKLKKVLYEFKDVQYKEGDNLTFTSTIKHEIKTHHEDPVYRRP
FT                 YKYAQIHDQEVNQQIKDMIRQGIIRKSISPYCAPISMIPKKLDASGRQKYR
FT                 MVVDYRSLNEVTIKDKFPTPRMDEILDKLGRCQYFTTIDLAKGFHQIPMEP
FT                 NSISKTAFSTKQGHYEFTRMPFGLTTAPATFQRCMNNLLEDLIFKDCLVYL
FT                 DDIIIYSTSLEEHLLSLRKVFGKLRDANLKLQMDKCEFLKRETEFLGHVVT
FT                 TNGIIPNPRKISAIINFPIPDTTTKIKSFIGLCGFYRKFIPNFANIAKPMT
FT                 LKLKKRAVIDPTEEKYVEAFEKLKVLITSDPILAFPDFDKMFTVTTDASNI
FT                 ALGAVLSQDHKPICYASRTLNEHEINYSAIEKELLAIVWATKYFRSYLFGR
FT                 PFEILSDHKPLVWLNNLKEPNMKLQRWKIKLNEFDFKIKYLPGKENHVADA
FT                 LSRVKINENLLGETINSDGATVHSAQEDNSNYIPLTERPINYYNRQIELIK
FT                 GNEDKVETSHYFHKIQIKITYTEMTESLAKDIIKEYVCTKKSALYFHNEID
FT                 FPLFQRAFLEIISPNHLTKLIKSSTKLIDIPNYSEFKERILKNHKELLHPG
FT                 IEKTTNWFKRKFYYPDYQKLIQNFINECPTCNVAKTEHRNTKLTFEITPEI
FT                 QNIREKYVMDFYLVGNQQFLSCIDVYSKFATLVEVNSRDWLETKRAIIKVF
FT                 NEMGKPQGIKADKDSAFMCAALQAWLNAENVKIEITTSKNGVSDVERLHKT
FT                 INEKLRIILSEDNIENRFTKFELILYTYNHKTVHNTTKRTPADIFLYAGLP
FT                 DYNTQLNKVRKINHLNNDRIDFEVDTRYKSAPLVKTKTTNPFKRTGEIRQV
FT                 DEKHFEEKNRGRKITHYKTKFKRKKKSNKSKYDNCRVPEESTGNLELQLDK
FT                 DDNLANVHRPTVHRTEYRDRPH"
FT   CDS           4256..5791
FT                 /product="Gypsy-17_DAzt-I_3p"
FT                 /note="env."
FT                 /translation="MKNISKRKIEGGKSPIIKQNSKGRKNLIRVNTIIAEY
FT                 PKRVLGTWNYNLIKMIILLMFTVLQSTGQNIEIDPINSRNGYLIFKTDTIN
FT                 IPINYEYHYLTINITKTEETNQNLLEQASQFDDIIQVQYLVEKLQREFNGI
FT                 KLAKRNKRGLINAVGTIYKYLFGTLDQDDKVELEAKIENLASHSVQANELD
FT                 LIIQAVNSGIEVVNKLNKDNDRNKQLEILTFNLQHFTEYIEDVELGMQLTR
FT                 LGIFNPKLLKQDYLKHIDSEKLLNIKTSTWLKSDTNEILIISNIPREIRNI
FT                 PVIKIVPYPDEDNNILTDLTQNNYYVLENEVYEKDSKRKTNDECISGIVKQ
FT                 IATKCPYTKANQNFQINFIEPNILLTWKLPRTILNQDCLKQEIKIEGNSLI
FT                 KIHNCTVQLNEFLISNSISEMAQSIYINNNVTKIKPLSYLQTKEIVIENTR
FT                 LNNVLHVSSIFLFIIFIIGLLSYKLFNLSKNKKLKTKPQLETTLDEDGESP
FT                 TCTVLNAPELYPRIIA"
XX
SQ   Sequence 5821 BP; 2347 A; 1119 C; 957 G; 1398 T; 0 other;
     ggcgcagtcg gtaggatctc agtctaaaaa gtgaaatttt ttttaagaca atcaactagc        60
     gtagaacaat tacagtgcgt aataactaca gtgattcgag aaaaagtgac actattacca       120
     agagatccgc caaagaatct acatgcgatt caaacaactt gatatagtga aaaatatcaa       180
     caacccaaca ccaatacaaa aaaaaaatat ataaatcaac atgctgctat cagagatcca       240
     tctgaaccaa gccctgaagt caatcagaca aattccacca tacgacggat cccaggaatg       300
     gctgagctcg ttcatcaaca ggatcgagta catctccgga ctgtacccga cagatgacat       360
     ccggcaacaa agcatattgt acggagccac agagggtcaa ctgtgcatac gagcacaact       420
     tctttcacaa agtcttcaac ccaactcctg gaccgatttg aaagcagccc tgaccagaaa       480
     atttaacaat catacaccat acgagacgct acttcaacaa ctacacgaca ccaaattcag       540
     cggaaatatt cgtaagtttg tagaagaatt agaaattaag tcaactgtca taatttgtaa       600
     actaaatctg gaaactagct cagaaaataa gacgatcttt aaaaacgctc tggctaatgc       660
     catcagacac acaatagaag actctttgcc taataagttg ttcatcactt tagccaagaa       720
     agatatttct actatagcta atctagaaaa atcagcgcaa gagttaggaa tttatgaaaa       780
     tttcgtaact gataacaaga acaatgaaca ctcaaaaaac gtaaataaca atcgaaggaa       840
     tgttggaact tattaccctc gttatagtag ttatgattct aacaaccaaa atctaaacac       900
     ctttagaact aaccatggat cgaatagaaa caatctaggg aataatgcct caaataatac       960
     aggaatgctt aacgaattta gaaattcact aaaccaaggc agggcacaga atcccactaa      1020
     ctatcaaatc aataggaatc aggctggcgg tagtgcaccg aatcaaccag tcaaacgatc      1080
     tagggaaagc caaagtggac atatgaaaat ggatgtaaat tttcagcaga gtgcctcgga      1140
     gaacccagag gaagaccata tatagaaata atactaaaca ataagaaatt aagaggtatc      1200
     gctgactcag gatcgtcaat aaatataata aaagaaaatt atacaaagtc aaaagtcgat      1260
     agcgacaacc tcactgtcca taccatcaat ggacccgtcc gtctgaccaa gagcattaca      1320
     cgtaatgcaa caaaaaattg tccgaccaag caaaaatttt atattcataa tttttccgat      1380
     aattatgaca tactcttagg cagagaatat ttgatggcaa gcaaagccat catagattac      1440
     cgaaacgaaa cggtaacgat aggagaaagg tcatacccga tcatccaatg tggagaagta      1500
     attgcagacg gcaagaccgc acacaaaggt gataagccat cttcaaagaa agatataatt      1560
     acacctaagt gccttgaccc atctcttgaa ggagagcaat acttcacttc tgcattagag      1620
     aacgaattaa gggaatgtaa ccagctaagg ttggaacact taaatgacga agaaagagag      1680
     aagctaaaga aagttctcta tgagtttaaa gacgtgcagt ataaagaagg tgacaatttg      1740
     accttcacta gtacaattaa gcacgaaata aaaacccatc acgaagatcc ggtgtatcgt      1800
     agaccatata aatatgctca aatacacgat caagaagtga accaacaaat caaagatatg      1860
     attaggcagg gaatcattcg taagtcgatt tcaccctatt gcgcacccat ctcgatgata      1920
     ccaaagaaat tagatgcttc aggaaggcag aaataccgaa tggtagtaga ctacagaagt      1980
     ctaaatgagg tgacaatcaa ggataaattt cctacaccca gaatggacga aatattagat      2040
     aaactaggca ggtgccagta tttcacaaca attgatttag ctaaaggatt ccatcaaatt      2100
     ccaatggaac ctaactcaat ctcaaaaact gctttctcta ctaagcaagg ccattacgag      2160
     ttcactcgta tgccttttgg gctaaccact gcccccgcta catttcaaag atgtatgaac      2220
     aatctgttag aagacttaat cttcaaagat tgtctcgtat acttagatga catcattatt      2280
     tattccactt cattggaaga acatttgctg tcgcttagaa aagtctttgg aaagttgaga      2340
     gatgcaaatc tcaaacttca aatggataag tgcgaattcc tgaagagaga aacagaattc      2400
     ctaggccatg tagtaaccac taatggcata atacctaacc cccggaaaat atccgccata      2460
     ataaacttcc ctataccaga tacaactacc aagataaaat cattcatagg tttatgtgga      2520
     ttttatagga agttcattcc caatttcgct aacatagcaa aaccaatgac actcaagtta      2580
     aagaaacgag ctgtcataga cccaacagag gaaaaatacg ttgaggcctt cgaaaagctg      2640
     aaagtgctta tcacctcaga ccccatcctc gcatttcctg atttcgacaa aatgttcaca      2700
     gttacaaccg atgcaagtaa cattgcatta ggagcagtgt tgtcacaaga ccacaaacca      2760
     atttgctacg caagcaggac cctaaatgag catgaaatca attactcagc tatagaaaaa      2820
     gaattactag ctatagtctg ggcaactaaa tatttcagat cgtatctgtt cggtagaccg      2880
     tttgaaatat taagtgatca caaacccttg gtgtggttga ataacctcaa ggaacccaat      2940
     atgaagttac aacgttggaa gatcaaatta aatgaatttg acttcaaaat caaatattta      3000
     ccaggtaaag agaaccatgt agccgatgcg ttatctagag taaagattaa cgaaaaccta      3060
     ctgggggaaa ctattaatag tgatggtgca acggtccata gcgctcaaga agataattca      3120
     aattatattc cacttactga gcgaccaatc aactattaca acaggcagat agaactgatc      3180
     aaaggtaatg aagataaggt agaaacatcc cattatttcc acaagataca gataaaaatc      3240
     acgtatacag aaatgacaga atctttagcc aaagatataa taaaggaata tgtgtgtacc      3300
     aaaaagagtg cactatactt ccacaatgaa atagattttc cactgttcca aagggcattc      3360
     ctggaaataa tcagtcctaa tcatttgact aaactgatca aatccagcac aaaactcatt      3420
     gatattccaa attattccga attcaaggaa agaatattga agaaccataa agaactactt      3480
     cacccaggaa tcgaaaaaac cactaattgg tttaaaagaa aattctatta ccctgattac      3540
     caaaagttaa ttcaaaactt catcaatgaa tgtcccacgt gcaacgttgc caaaacagag      3600
     catcgtaaca ctaaacttac attcgaaatc acccccgaaa tacagaatat tagagagaaa      3660
     tatgtcatgg atttctatct ggtaggcaat caacaattcc tatcatgcat tgacgtatat      3720
     tctaaatttg ctacccttgt agaagttaac agtcgtgact ggcttgaaac aaaaagagcc      3780
     atcataaaag tctttaacga aatgggtaaa ccacagggaa tcaaagccga taaagattca      3840
     gcctttatgt gcgcagcatt gcaagcatgg ttgaatgcgg aaaatgtcaa aattgagatc      3900
     acaaccagta aaaacggagt ttctgatgta gaacgtttac ataaaaccat caatgaaaaa      3960
     ctaagaataa tattaagcga agataatata gagaacagat tcaccaaatt tgaattgatt      4020
     ctatatactt ataaccataa aacggttcat aataccacaa aaagaactcc agctgatatc      4080
     tttctgtacg ccggattacc agattacaat actcaattga ataaggttag aaagatcaat      4140
     catttgaata atgatagaat cgattttgaa gtagacacac gatacaagag tgcaccactt      4200
     gtcaaaacaa agacaaccaa cccgttcaaa agaacaggag aaatcagaca ggtagatgaa      4260
     aaacatttcg aagagaaaaa tagagggagg aaaatcaccc attataaaac aaaattcaaa      4320
     aggaagaaaa aatctaataa gagtaaatac gataattgca gagtacccga agagagtact      4380
     gggaacctgg aactacaact tgataaagat gataatcttg ctaatgttca ccgtcctaca      4440
     gtccaccgga cagaatatag agatagaccc cattaactca aggaatgggt atctcatatt      4500
     caaaacagac actatcaata tacctattaa ttacgaatac cattatttaa ccattaacat      4560
     aacaaaaact gaggaaacca atcagaattt actagaacag gcatcacaat ttgatgatat      4620
     aatccaagta caatacttag tcgagaaact gcaacgcgaa ttcaacggta taaaattagc      4680
     caagagaaac aaaagaggcc tcataaatgc agtaggcacc atttataaat atctattcgg      4740
     aacgttagac caagacgata aagtcgaact agaagcaaaa atagagaacc tagcaagcca      4800
     cagtgttcaa gcaaacgaat tggatttaat aattcaagcg gtaaactctg gcatagaagt      4860
     cgttaataaa ctaaacaaag ataacgatag aaataagcaa ttagaaatat taacattcaa      4920
     ccttcaacat tttacagagt atatagaaga tgtagaatta ggcatgcaac taacaagatt      4980
     agggatcttt aatccaaaac tattaaagca ggattaccta aaacacatcg attcagaaaa      5040
     gttgttaaat atcaaaacat caacttggtt gaagtcagac acaaacgaaa tactaataat      5100
     ttccaacatc ccgcgagaaa tcagaaatat tcctgtaatc aaaattgtcc catatccaga      5160
     tgaagacaat aacattctta ccgatttaac acaaaacaat tattacgtct tagaaaatga      5220
     ggtatatgaa aaagattcaa aacgaaaaac aaatgacgaa tgtatatcag gaatagtcaa      5280
     acaaatagca acaaaatgtc catacactaa agcaaaccag aactttcaaa taaattttat      5340
     agaacctaat atattattaa cctggaaatt gccaagaacc atattaaatc aagattgcct      5400
     aaaacaagaa ataaaaatag aaggcaactc attaataaaa atacataatt gcacagtaca      5460
     attaaatgaa ttcctaatat ccaactcaat atcagaaatg gcacaaagca tttacataaa      5520
     caataacgta acgaaaatca aaccactgtc ttatttacaa accaaagaaa tcgtgataga      5580
     aaatacacga ttaaataatg tattacacgt aagctcaata tttttgttca ttatattcat      5640
     aataggatta ttaagctaca aattgtttaa tttaagtaaa aataagaagc ttaaaaccaa      5700
     accacaatta gaaaccacct tagacgaaga cggtgaatct ccaacgtgca cagttttaaa      5760
     tgcacccgaa ttatatccac ggataatcgc ctgaggacag gctttaatct aacaatgggg      5820
     g                                                                      5821
//
ID   Gypsy-17_DAzt-LTR repbase;    DNA;    INV; 705 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-705
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 821-821 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, mostly ATAT.
XX
SQ   Sequence 705 BP; 229 A; 204 C; 116 G; 156 T; 0 other;
     agtgacatat ctagagctca tgctccgcat acccgcagct acatctgtta ccctacaccc        60
     acatgtcata aacataacga catcctcagc tacgaatccc ataaacaatc ccacgcttga       120
     agtgaaccac ttgtagccga tagccggcaa tgtaaacaga caccccgggc caagagccta       180
     acataaaaca atagatgccg ctatccagct gcactagaat cacgctactc tccagtaatc       240
     aatttccaat cgattccaaa gaatcacgcc atcctaactc accaatcaga gtcggtcgta       300
     aaaccaagga ggctcacatt cctagacacc ctcaagtaat gcaacaccga gcggatgcct       360
     ttcatcgaag cctcactttc ccacatctcg attgagacac gtacagccgc cacccacaca       420
     tcgatcgagt cacgtactcc agcatcggag ccgaagccga agccaacgcc tccgaactcc       480
     aatacgaaca tcgtaatata aatagtctac ttctaagtag ggacatcagt tctgttcaag       540
     acaaacgtca acctagacac cgtcggagag ctcactccta gttattccgt ttgagacact       600
     aagacataag tcatcgtcag ggaattaact aatcattgta cattaacgtt taagagttta       660
     ataaatcttt ttaaaaacgc aaacgtgagt gtcacatatt taact                       705
//
ID   Gypsy-17_DBi-I repbase;    DNA;    INV; 6827 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   31-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DBi_;
KW   Gypsy-17_DBi-LTR; Gypsy-17_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-6827
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 851-851 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4740-5210] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           694..2034
FT                 /product="Gypsy-17_DBi-I_1p"
FT                 /translation="MPEPSTSQTGANKRLHMNPPQENTSHQAITNNTMLNV
FT                 GDLIKQIVNFELNPLKEEIVNLRSQLSHKIKTVEDYQTEIVDPNIKCDTSY
FT                 EIIKSVREYKGEEDKYVSWRESAEVAMGQYARGSERFYSALSILRNKITGM
FT                 ANDALTHNGTVLNFDAIMARLDFVFSDKRPIHIIEQELSVLSQGKLSIMDY
FT                 YGTVNRKLTLLINKTIMTYGRNKPITAEMNEKHRKTALRVFITGLNGQISD
FT                 TIFSMNPPDLPNAMVIVQELESNNMRAHFANSFSTTQRKHSEPNSSGNGQT
FT                 HFNHKTRQQNNSYSNQRNNNNLRFNHDNYQNKNTYGYYNQNKNNSWNQGRF
FT                 NNNQQKQWNTYRQPQNNPEPMEVDESIQVQNKANNGYNQGYNKYQNNNYSQ
FT                 NKWDQTKKFETQNTQQGQAQNKRVPTGTVNQPANKTMRLNNIEENHFLDKS
FT                 QE"
FT   CDS           2214..5444
FT                 /product="Gypsy-17_DBi-I_3p"
FT                 /translation="MITIFDTRYTFYEIDGLDSDLLVGYNLLKKIGAVIDT
FT                 AKGVIKYNGIEEKLNYDNGNILNQHSLTEENTILPLKEFILKKYFDEKAQI
FT                 RSESEMGNQSESSLGYTNPEHAVVEKSDKNKSLEFKNSEHAVVEISDKNKS
FT                 LGIKNPERAVVEKSDKNKSLEFKNSEHAVVELPDNQKINNIKISSADQRKD
FT                 LENEILNIINEEHSKINMQIPFRTDIRGEINTVNDRAIYSKQYPYAQSASD
FT                 FVNSEINRMLNEEIIRPSRSPYNSPVLVVPKKGFNEDGTPKLRLVIDYKKL
FT                 NENTIPDRYPMQDPSVILSNLGKAKYFSTIDLESGFHQILMNEPDIQKTSF
FT                 SINNGKYEFLRMPFGLTNAPRIFQRAMDDILREQVGKTCHVYMDDIIIFSK
FT                 TIEQHYKDLILIIKILLNANMKISIEKSKFFKLETNFLGYVVSHNVIKTDP
FT                 EKIYTIVKYPIPKNIRELRSFLGLTGYYRKFVQNYAKIAKPLTKYLEGQNG
FT                 KVSKKASRKTLIQFDDSAVRAFNELKENLIAQVELVQPDYNKKFTLTTDAS
FT                 DLAIGAVLSQEGKPITFISKTLTKTEQLYATNKKELLAIVWAFKNLRNYLY
FT                 GVNNIEIYTDHQPLSFSISQKNPNIEMKRWYSFIESYSPKIIYKPGATNVV
FT                 ADALSRIQINNLTESNESVSDQNTQHSAESSFENVIQETRKPLNQFKQQLL
FT                 IATGRYTIHESINVFGNNRHIIEYDTPENLVSILREYIPPNITIGVHCTLE
FT                 DFYRIQKPLKDNFINKFLYTRTFVQDVENAEDRSLIITETHCRAHRGLDEN
FT                 YKQITRLYYWPNLYKKLKEFIKNCTICNQNKYNRHPVQIPIGQAPIPEREG
FT                 ENLHLDIFYAQNLIFITCIDSYSKYLVVKEIPNKLNIENKVSEILQQFPLA
FT                 KSLMIDNEPSFSSSQFKSFAQRNGISLFFADPRHSTSNGQIERAHSTLTEI
FT                 ARCIKDELNLIDYPEIIIRAAQKYNLTIHSITNHRPFDILFNKIKHDDIPK
FT                 LLQQAQEKMLHFHNKDRQNKNYHVGEVIYEKKHGERNKLNSRYKKQVVKEN
FT                 LPNKVIINNRNRTIHKDNIK"
FT   CDS           5468..6508
FT                 /product="Gypsy-17_DBi-I_2p"
FT                 /translation="MISIMYLLLLVATTKSEIMDYTNHDFLLYKDTKDVLI
FT                 YESHADLFHITNISFYREIINLETEFLKGHDNKNFLWEISHDLEIIKILIS
FT                 QVIPSRSKRGINEIGTIWKWIAGTPDHDDFITVQNKIDDLIQNNNDQFVIN
FT                 SKIFKEIKSLSEQFKTAFKNQEIPLRKYRLRLLTYDLMNLMDTITLAKIDV
FT                 FNTKILNNDDILEIYKHEDRPVVITDLLDISEFKIALHRCDVYNSRSISHN
FT                 DGKLLIDNHVAKCRNKYYVMSNFKTEIFNNYCTLNPEGSCFTRLLNGEKSF
FT                 CIKIREKNKNVDVIQDGAIFVNGENTVNDTHLNGSYLITFNGTTKINNISY
FT                 TNVD"
XX
SQ   Sequence 6827 BP; 2834 A; 1121 C; 1034 G; 1835 T; 3 other;
     caagtgagaa acttaattgg cgcccaacgt ggggccgtgc gattaaaaaa ttctaaaaaa        60
     gcaagcttta aaataaaaac aaaaaagttt taaagtgaaa aaaggaattt agcgcggcca       120
     aaaaaacccg atacaaccga cgaataaata aaaagtttgt gttgatcaaa aaaactaagg       180
     tggaaattaa ttaatgaaat aatccccttg aaatctcaaa ctacaaaata gtgatcgtaa       240
     cataaattca ctgctcggac aatataaaaa tcgaaaagcg acaaaaaatt tttcaaaaaa       300
     aaaaaataaa cattgtgaaa aacaatttta aaaaaatctt caaaatcaac aacaaagaca       360
     ttctaagaaa acaggctgaa gggcaatccc tcgccaaata ttggaaaaga aggaagacct       420
     aatttaaaaa cagaaaagaa ggaagacccc gagacaattt aaaaacagaa aaaagaagga       480
     cgaccccaat caggatcatc attcaggata aggacgaccc caacaggaaa aataacaacg       540
     agaagagaaa aaaataagga cgattcgtga gcgatactat tttttattat catacatttt       600
     ttattattat tattttataa aaaatttgta agaaaggaaa tataaatata caaagtggaa       660
     gagttaattt caaatttcga aaaagttctc aaaatgccag aaccttcaac aagccagact       720
     ggagcaaata aaagactcca catgaatccg ccacaagaaa atacaagcca tcaggcaata       780
     acaaacaaca ccatgttaaa tgtaggagat ttaattaagc aaattgtaaa ttttgaatta       840
     aatccattaa aggaggagat cgttaactta agatcgcagc tttctcacaa aattaaaacg       900
     gttgaggatt atcagacaga gattgtagat ccgaatataa aatgcgacac atcttatgag       960
     atcatcaaat ctgttaggga atataaaggt gaagaggata aatatgtaag ctggagagaa      1020
     tcggcagaag tagccatggg gcaatatgcc agagggagtg aaagatttta ttctgcctta      1080
     tctatattac gaaacaaaat aacaggaatg gcaaacgacg ccttaaccca taacggtact      1140
     gtattaaatt tcgatgccat aatggccaga cttgacttcg tctttagcga caaacgacca      1200
     attcacatta ttgaacagga attaagtgta ttgagtcagg gaaaattatc cataatggat      1260
     tattatggta cagttaatag aaaattaact ctgctaatta ataaaactat tatgacctac      1320
     ggtagaaaca aacctataac agcggaaatg aatgagaaac ataggaagac agctcttaga      1380
     gttttcatta ccggcctcaa cggccaaatt tcagatacta ttttctcaat gaatccacct      1440
     gacctaccaa atgcaatggt catagttcag gaattggaaa gcaacaacat gagggctcat      1500
     ttcgcaaata gtttctctac tactcagaga aaacatagcg agccaaactc tagtggaaat      1560
     ggacaaacac atttcaacca caagacaaga cagcaaaaca atagttacag taaccagcga      1620
     aacaataata atttaaggtt taatcatgac aactaccaga acaaaaatac ttacggttat      1680
     tataatcaga ataaaaataa ttcttggaac cagggtagat ttaataataa ccaacaaaaa      1740
     cagtggaaca cctataggca gccacaaaat aacccggaac caatggaggt agacgagtct      1800
     atccaggttc agaataaggc taacaacggc tataatcaag gctataataa atatcaaaat      1860
     aataattata gtcagaacaa gtgggatcaa acaaaaaaat ttgagaccca gaacactcag      1920
     caaggccaag cccaaaataa aagggtacca actggaactg ttaaccaacc ggctaacaag      1980
     acgatgagat taaataacat tgaggagaac cattttttag acaaaagtca ggagtaggct      2040
     taccctactt aattagaaat gatccaaaaa taaataaaaa attaaaaata ttaattgaca      2100
     ctggggcaac ctcgtgttat ataagaacag gaatttataa aaataagaac gagcttccaa      2160
     tttacaaaag agtatctaca gtgaatggat attcaataat taaatattat catatgataa      2220
     ctatttttga tacgcgatat actttttatg aaatagatgg gctagactca gatttactgg      2280
     tcggctataa cctattaaaa aaaataggag cggtaattga tacagctaag ggagtaatta      2340
     aatataatgg aatagaagaa aaattaaatt atgataacgg aaacatatta aaccaacatt      2400
     ctttaacaga agaaaacacc attcttccat taaaagaatt tatattaaaa aaatactttg      2460
     atgaaaaagc tcaaatcaga tccgaatctg aaatgggtaa tcaaagcgaa tctagtttgg      2520
     gatatacaaa tcctgaacac gccgtcgttg aaaaatccga caaaaataaa agtttggaat      2580
     tcaaaaattc cgaacacgcc gtcgttgaaa tatccgacaa aaataaaagt ttgggaatta      2640
     aaaatcctga acgcgccgtc gttgagaaat ccgacaaaaa taaaagtttg gaatttaaaa      2700
     attctgaaca cgccgtcgtt gaactacccg acaatcaaaa aataaacaac ataaaaatat      2760
     cgtctgcaga tcaaagaaaa gatctggaga acgaaatatt aaatattatc aatgaagagc      2820
     attcaaaaat aaatatgcag atcccattta ggacagatat ccgcggtgaa ataaacaccg      2880
     taaatgatag ggccatttac agcaaacaat acccttatgc tcaatcagct tcagattttg      2940
     tgaattctga aataaatcga atgttaaatg aagaaattat aaggccaagt agaagtcctt      3000
     ataattcacc agtactagta gtaccaaaaa agggtttcaa tgaagacgga actccaaaac      3060
     tcagactcgt aattgattat aaaaaactta atgaaaatac aataccagat agatatccaa      3120
     tgcaggaccc ttcagtgatt ttgtcaaatc ttgggaaagc caaatacttt tcaacaattg      3180
     acttggaatc tggatttcat cagattctca tgaatgaacc agacattcag aaaacctcat      3240
     tttcaataaa caacgggaaa tacgaattcc taagaatgcc tttcggtttg accaacgctc      3300
     caagaatatt ccaacgagcg atggatgata ttttaagaga acaagtgggt aaaacatgtc      3360
     acgtttatat ggatgacata attatatttt caaaaacaat tgaacaacat tacaaagatt      3420
     taattctcat tattaaaatt ttgctgaacg caaacatgaa aatttcaatt gaaaaatcaa      3480
     agttctttaa attagaaacc aattttctcg gttacgttgt ttcccacaat gtgataaaaa      3540
     ccgatcccga aaaaatttat actatcgtaa aatatccgat acctaaaaat attcgagagc      3600
     ttagaagctt cctaggcctt acaggatatt acagaaaatt tgtgcaaaat tacgcaaaga      3660
     tagctaaacc tttaacaaaa tatttagaag gccaaaacgg caaagtatca aaaaaggcat      3720
     cacgtaaaac tttaatacag tttgatgatt cagctgtaag agcttttaac gagctcaaag      3780
     aaaatttaat tgcacaagta gaactagtac aaccagacta taataaaaaa tttactctaa      3840
     caacggacgc atctgactta gcaattggtg ctgttctttc tcaggaagga aaaccaatta      3900
     catttatttc aaaaactctg acaaaaaccg aacaattata cgcaaccaat aaaaaggaac      3960
     ttttagccat tgtatgggct tttaaaaatc ttcgaaatta cttatatggg gttaacaaca      4020
     tcgagatcta taccgatcat caacctcttt cattttccat ttctcaaaaa aatccaaata      4080
     ttgagatgaa aaggtggtat tcctttattg aaagctattc acccaaaatt atttacaagc      4140
     caggagcaac aaatgttgtt gcggacgctt tatctaggat tcaaataaat aacttaacgg      4200
     aaagtaatga atcggtctca gatcaaaata ctcagcattc tgcagagagt agttttgaga      4260
     atgtaataca agaaacccga aaacccttaa accagtttaa gcaacaattg ctaatagcaa      4320
     cggggaggta tacaatacat gagtcgatta atgtattcgg aaataataga catataatag      4380
     agtatgacac tccagaaaat ttagtatcaa tcttaaggga atatattcca cccaatataa      4440
     caataggagt tcactgtact ctagaagatt tttacagaat tcaaaaacca cttaaggaca      4500
     attttataaa taaattttta tacacnagga catttgtcca ggatgtcgag aacgctgaag      4560
     acagatctct tattatcaca gaaactcatt gtagagctca tagagggctt gatgaaaatt      4620
     ataaacaaat aactagactc tattattggc caaatttata caaaaagctt aaggagttta      4680
     taaagaattg cactatctgc aatcaaaaca aatacaacag gcacccagta cagattccta      4740
     tcggtcaagc accaattcca gaaagagaag gtgagaattt gcatcttgac atattttacg      4800
     cccaaaatct tatattcatt acttgtatag attcgtattc gaaatactta gtggtaaaag      4860
     aaatccctaa taaactaaat atagaaaata aagtttcaga aattttacaa caatttccat      4920
     tagccaaatc tttgatgata gataacgaac caagtttttc ttcatcccaa tttaaatctt      4980
     ttgcacaaag aaatgggata tctttattct ttgcagatcc tcgacatagt acgtctaacg      5040
     gacaaataga aagggcacac tctaccttaa cagaaattgc tcgctgcatt aaagatgagc      5100
     ttaatttaat tgattatccc gaaattataa ttagagcagc acaaaaatac aatttaacaa      5160
     ttcattcaat aaccaatcat cgaccttttg atatattatt taataaaatc aaacacgatg      5220
     atattcctaa attattgcag caagcccaag agaaaatgtt acattttcac aataaagata      5280
     gacaaaataa gaattatcac gtaggagagg taatttacga aaagaaacac ggggaaagga      5340
     acaagcttaa ttctagatat aaaaaacaag tagttaagga aaacctccca aataaagtta      5400
     ttataaataa cagaaaccgt acgattcata aagataatat taaataactt gtttcaaatt      5460
     acagataatg atttcaataa tgtacttatt attgctggta gcnacaacca aatccgaaat      5520
     tatggattac acgaaccatg atttccttct ttacaaggat accaaagatg ttcttattta      5580
     tgaatcacac gcagatttat ttcatataac taatataagt ttttatagag aaataattaa      5640
     tcttgaaaca gaatttctaa agggtcacga caacaagaat tttctttggg aaatatccca      5700
     cgatttagaa attatcaaaa tacttatctc tcaagttata cccagtagat caaaaagagg      5760
     cattaatgaa ataggcacca tttggaaatg gatagcggga acaccagatc atgatgattt      5820
     cataacagtc caaaataaaa tcgatgattt aatacaaaat aataacgatc aattcgttat      5880
     taattctaaa atatttaaag agataaaatc tttgtctgaa caattcaaaa cagcctttaa      5940
     aaatcaagaa attccactta gaaaatatcg tctgcgtttg cttacttacg atcttatgaa      6000
     tttaatggac acaattacac ttgccaaaat tgatgtattt aatactaaaa ttctaaacaa      6060
     tgatgatata ctagaaattt ataagcacga agatagacct gtagttataa cagacctttt      6120
     agatatatct gaatttaaaa tcgctttgca tcgttgtgac gtttacaatt caagatccat      6180
     ttcacataat gatggaaaat tattaattga taatcacgtc gcaaaatgta gaaataagta      6240
     ctatgtaatg tctaatttta agacagaaat atttaataat tattgcacac ttaacccaga      6300
     aggctcttgt ttcactagat tactaaatgg agaaaaatcc ttttgtatca aaatccgaga      6360
     aaaaaataaa aatgtagatg taatccaaga tggagccatt tttgtaaatg gagaaaatac      6420
     agttaatgac actcatttaa atgggtcata tttaataact tttaatggca ccactaaaat      6480
     taataatatt tcctacacca atgtagacan taacatacta aatccattta ttcaaattaa      6540
     acagactcaa ataccagtta cgttaatatt aatcatattc acatttatat atttaactat      6600
     tacgattata atcaaattca gaaaattttt aatattcaaa ccatggcaaa ttcatataga      6660
     aattgaacca gaaaataata tttccgataa tgaaataaat aatatacccg acaatgaaaa      6720
     taccctagaa gaaaatatca ttgtcgaatt aacccaacaa ttacattcaa tatacccatc      6780
     agttccaatg aatcgggacg attcaattta gaatgggggg agttata                    6827
//
ID   Gypsy-17_DBi-LTR repbase;    DNA;    INV; 610 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   04-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DBi_;
KW   Gypsy-17_DBi-LTR; Gypsy-17_DBi-I.
XX
NM   Gypsy-17_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-610
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 852-852 (2012).
XX
RN   [2]
RP   1-610
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (04-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 610 BP; 208 A; 132 C; 101 G; 168 T; 1 other;
     agttatatga cacattattt aggggctctt acccaattta taaacaactt tgagccgaga        60
     gccaatttcc aaataactct gacagacccg agataaatcc gtggtcagct atttctttca       120
     accaggcctc cgaatcattc ccacccagat caatttcacg cagcccaaat caaacggatg       180
     ctgtaaacat ccagtccgct aacgtaaaca aaagatcccc aaagcgagcc ccgagtccgt       240
     taacgtaaac aaaaagatcc ccaaagcggt ccctaaaact ccgctaatgt aaacaccaat       300
     ttccggccaa gattggactt caaatttaat tggcaaattg catcatccta ttttccgact       360
     ctcttgagcc attctcttta tcaatttttg gggataaant ctcttaagcc gaggtttgat       420
     tattgatcat tgaactagag atcaggcagt ccgtttttga gatccgaatc gagcagtagt       480
     gcaaatcgag taaaagtaaa cgagcagtga attaactaag ttcgacctat taaaaaattg       540
     tagtagagat taagtgatta ataaataaaa ttaaattttt ttaattaaat cacgagtgag       600
     aaacttaatt                                                              610
//
ID   Gypsy-17_DBp-I repbase;    DNA;    INV; 3165 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3165
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 682-682 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3091
FT                 /product="Gypsy-17_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="DKIRSRNTNRLRQYWDSLRKIEAIRYKTSDKRPFAEV
FT                 RLLGEVVLGLLDTGAAVSCIGGSFAERFIKSKADFKRKGTTVSTADGQRQQ
FT                 VVGQLTTDVEFKGLSKTHTFYLVPTLSQDLYLGIDFWKSFELLPSEFQVGE
FT                 ISVRQELSETQQTSLQAVIELFPSFAKLGLGKTHLISHSIDVGETKAVKQR
FT                 HYPVSPAVEKLLYGEVERMMKLGVIEESQSAWSSPVVLVQKPGKVRLCLDC
FT                 RKVNSFTQGDAYPLPQIDAILSRLPKAMFISSLDLKDAYWQIPLEPASRDK
FT                 TAFTIPGKPLYQFRVMPFGLMNASQTMTRLMDKVIPAALRNEVFVYLDDLL
FT                 VVSDTFESHLAVLTTVAKHIKQAGLTLNIEKSHFCMRTVKYLGHVIGEGVI
FT                 RTDPEKISAMVDYPVPRTLKALRSFLGMTGWYSKFISNYADIAAPLTDLVR
FT                 PKCRFTMTQAGLEAFSKLKNAMCQAPVLHSPDFRKPFYIHCDASSYGIGGV
FT                 LVQKTEGEKGDEYPIAFVSKKLSKAQRNYSVTEQECLAAIICIKRFRPYVE
FT                 GHRFTVITDHASLGWLMAQPDLRSRLGRWASKLQAYKFQIEHRKGKLHVVP
FT                 DALSRAYEGEAEEEVVAGLGMDYESPFFETDEYKTLRNTVEANKETVPDLK
FT                 VMEGKVFRRAKQDQGVGLGESFAWKLWVPNEMIPEVMKEAHDSPTAAHGGI
FT                 HKTLERIRRMYYWPGLVXDVKDYVGNCEVCKACKVPNQITRPAMGRPAETQ
FT                 RFFQRIYVDFLGPYPRSKSGNIGIFIALDHYTKFVFLKAVKRLSADVVVKY
FT                 MRQELFHTFGVPETVFSDNGTQFKGEAFRTLMRENRVTQIFTAVHSPQANA
FT                 SERVNRSIIAAIRSYVREDQRNWDEHLSEICCALRTSVHSGTGATPYYLVF
FT                 GQQFVGSGGSYKLMRELGLLEDREIRLSREDSLDLVRAQAQKALAKQTEKN
FT                 ERRYNARSREVTYREGQEIFRRNFKQSNFAAGYNAKLGPRYVKARVRKRTG
FT                 NSTYELEDMQGRAIGTYHAKDLKQ"
XX
SQ   Sequence 3165 BP; 880 A; 661 C; 924 G; 699 T; 1 other;
     cgataagatt aggtctagaa acactaacag gttaaggcag tattgggatt cgttaaggaa        60
     aatagaagca ataaggtata agacttcgga caagcgtcca tttgcagaag ttagattgtt       120
     aggagaagta gtcctgggtc tgcttgacac cggggcagcg gtcagttgta tcggagggag       180
     tttcgcagaa aggttcataa agagcaaggc agacttcaag cggaaaggaa caacagtgag       240
     cacggctgat ggtcaacgac aacaggttgt gggacagctg acgacggatg tggagttcaa       300
     aggcctaagc aaaactcata ccttttacct ggttcccacg ttaagccaag atctgtatct       360
     aggtattgat ttttggaaga gtttcgaact tttgccctcg gagttccagg tcggcgagat       420
     ttcggttagg caggagttgt ccgaaaccca gcaaacgagt ttacaggcgg tgatagagct       480
     atttccatcc ttcgccaagc taggcttggg caagacccat ttgattagcc atagtatcga       540
     cgtcggagag acgaaagcgg tgaagcagag gcattatccg gtgtctccgg cagtagagaa       600
     gctgctctac ggagaggtcg agaggatgat gaagctaggg gtgatcgaag aatcgcaaag       660
     tgcttggtcg tcgccggttg tgctggtgca gaagccgggc aaagtccggt tatgtttgga       720
     ctgtaggaaa gtgaatagct tcacccaagg cgatgcctat ccactaccac agatcgacgc       780
     aatcctaagc agacttccta aagcgatgtt catctcgagt ttggatttga aggacgctta       840
     ctggcagatc ccgctggaac cagcttcacg cgataagacc gcgtttacca ttccagggaa       900
     gcctctatac cagtttaggg tcatgccttt cgggctcatg aatgcttctc aaaccatgac       960
     gcgactcatg gacaaagtta ttccggccgc gctacggaac gaggtattcg tgtatttgga      1020
     cgacctgctc gtcgtatccg atactttcga atcgcatcta gcggtcctga cgacggtggc      1080
     gaagcacata aagcaagcgg ggctaacgct gaatatcgaa aagagccatt tctgcatgag      1140
     aactgttaag tatctaggtc atgtgatcgg ggaaggcgtc ataaggacag atcccgagaa      1200
     gatatctgcc atggtagatt acccggttcc gcggacgttg aaggcgttac gcagttttct      1260
     aggcatgacc ggatggtata gcaagtttat aagtaactat gcggacatag cagcacctct      1320
     aaccgatttg gtgagaccca aatgccgttt tacgatgacg caggcgggtt tggaggcgtt      1380
     ctcaaaactt aagaacgcaa tgtgtcaggc tccggttttg catagtccgg attttaggaa      1440
     accgttctac atccactgcg acgcaagcag ttatgggatc ggcggagtat tggttcagaa      1500
     gacggaagga gagaaagggg acgagtaccc aattgccttc gtttcgaaga agttgagcaa      1560
     ggcccaacgg aactattccg tcacggaaca ggaatgcctg gccgcgatta tttgtattaa      1620
     gcggttcaga ccttacgtag agggacacag atttacggtg attacagatc acgcatcgtt      1680
     agggtggctc atggcacaac cagacttaag gtctcggctg ggacgatggg cgtcgaaact      1740
     gcaggcgtat aaattccaaa tagaacatcg gaaaggcaaa cttcatgtcg ttcctgacgc      1800
     gttgtctagg gcgtatgaag gagaagcaga ggaggaggta gtcgccggct tagggatgga      1860
     ctatgaatct ccatttttcg agacggatga gtataagact ctaaggaaca cggtcgaagc      1920
     taataaggaa acggtgccag acttgaaagt catggaaggg aaggttttcc ggcgggcgaa      1980
     acaagatcag ggagtagggc taggcgagag tttcgcgtgg aagttatggg tgccaaacga      2040
     gatgatcccg gaggtaatga aggaagccca cgacagtccc acagcagccc atggagggat      2100
     ccataaaacg ctggagagga ttcgacggat gtactactgg ccaggattag ttagkgacgt      2160
     gaaggactac gtaggcaact gtgaggtttg caaagcgtgc aaggtaccca accaaataac      2220
     gagacccgcg atgggaaggc cagcagagac gcagagattc ttccagagaa tttatgtgga      2280
     ctttttaggg ccgtatccga gatccaagag tggtaacatc gggatattta tcgcactaga      2340
     ccactacact aaattcgttt tcctcaaggc ggtaaaaagg ctgtcggccg atgtagtagt      2400
     gaagtacatg aggcaggaat tgttccacac gtttggagtt ccggagacgg tgttctcgga      2460
     caatgggaca caattcaagg gcgaagcgtt tagaacgcta atgcgggaga atcgggtgac      2520
     gcagattttt acggccgtcc attcgccgca ggctaatgca tccgaaaggg tgaataggtc      2580
     catcatcgca gccataagat cctacgtgag agaagaccaa aggaattggg atgaacacct      2640
     cagtgagatc tgctgcgcgt tgagaacttc agtccattcc ggtacgggcg caaccccata      2700
     ttatttagtg ttcgggcaac agtttgtggg atcaggagga tcgtacaagc tcatgaggga      2760
     gctagggctc ttggaggata gagagattcg gttatcccgg gaggattcgt tggatttggt      2820
     acgggcccag gctcagaagg ctttagcgaa gcaaacggag aagaatgaaa ggcggtacaa      2880
     cgcacggtcc agagaggtga cgtatcgaga aggacaagag attttccgta ggaacttcaa      2940
     acaaagcaac tttgcggcgg gttacaacgc caagcttggc ccaagatacg ttaaggcgag      3000
     agttcgtaag agaacgggta attcaaccta cgagctggag gacatgcaag ggagagcaat      3060
     aggcacttac cacgccaaag atttaaaaca atagtctacg cctccgtggt ttagctaaac      3120
     aggatcgtgt gagaccctgt tctagctctt gcgaaggggg cactt                      3165
//
ID   Gypsy-17_DBp-LTR repbase;    DNA;    INV; 1842 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1842
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 683-683 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1842 BP; 493 A; 406 C; 538 G; 398 T; 7 other;
     tgtaacgtcg gcgttagatc agtgtaggtg gcaaccccgg ggaggggaga tggcaaccga        60
     tctgggtacc ttttgccgta gtaggaccat agcaaggagt taggcgttkc caatgtccgg       120
     aggtctggca accggtgtaa aacgcgttat tggaagctgg aagctagaag cagaaatccg       180
     agcgggtaca gcactttctt tttcatttct ggcgtgaccc aaggaagttc atccaattaa       240
     agaagccgga aagatttacg tgggaagccg cacaagcaag gtggagaaca agcaccttcg       300
     gaagtcacca gcagatcaca gcagcaaaac mgaagcgcag cttgtkggca gacgcgccaa       360
     agggtcggcg ctaaagtgag gcaggtcacg gatcgtagtg gcggtgagtg gttaggttag       420
     gtcagggtcg atcgggtccg atgtataatt ttggcttttt agaacggagg gcctggtaca       480
     aggagtacgg ggcggtcgta aggagagacg ktggagtcgt gcgaggttcc cagtggagca       540
     gtcgacggcg cawatcgaga cggtgcgcgg cgcgaaaccg cccacgaggc gcggccgcga       600
     gaggacwggg ttcctaccgg agagcacggt cggagcagtc gccggaggag ctagagctgg       660
     ttgtggtccg aggcgagcga gctcgggagc caggctcgga gcgtttgcgg cgcttttaag       720
     gaacgctccg ccgcaagaaa aaggggagcg aaatcggtcc aactggtggc ctcgtggtgc       780
     cacgaagaac tgtgcggagt tggtgagcgg agggttccgc tccgaataaa gacttcgatt       840
     ggctagctaa gtgaatatct tttttgtgtg aacgggttag cgaaagcttt cccgagatat       900
     ttcctttcca gcttcgagca cgtggaagcg cttcaaccag ctcgtcgcgg acgaaagggg       960
     tgagtgagta cgagtagttt tacataaagc caatcgaagc gacgcggaac attccggtcg      1020
     tcaaactacc gcatcgtccg attcccggcc gaagggggtc caccaagtgg acggttgcct      1080
     tcgccataga caccgcgagc gatccgataa agagcccgat cctaaaatgt aaccagggca      1140
     tcgccgaacc gttcttatgt aatgctagct cgcggaaaaa gacggccgag tccattatag      1200
     aaaaacgcgc agatacgcag cgaatccacg tacgccaggc gcagtcagcc tttcaccacg      1260
     gagcggtgca gaagagctga gggtgtaatt tttattttat tatttggaga gcagagaaag      1320
     agatacatga aatgaaatat tattcgttaa ttccctaatt taagctaact ctaagatata      1380
     ttacattgga attcattgcc cccgcgctac tatagtttaa gtttttcatt ttcaatcatt      1440
     taacctagca tctagttggt agatacgtaa gccaagaagg aaaactgaat ttttagcgaa      1500
     gtaaggggaa acagggatgg ggaaaaagta aatgtataag awtaccttag cctaataaac      1560
     atgaatttta taatgagata aaagaaaaat aattcgcctc gcttaattcg ccaccgcctt      1620
     gccgctgaac cacccccaac ttttgcgttc tcgaggatct tgaggatcca aatgaaatct      1680
     gttttgagag gactatgttt ggccttcgca gttcgagagg ccgtgcacgc attctattaa      1740
     cgatagaatt tatgatcttc gaggtaagca tcagggagag agagggggcc ctatatgacc      1800
     cacccattag ccgacgaggc ctagctggca accgcgtgca ac                         1842
//
ID   Gypsy-17_DEl-I repbase;    DNA;    INV; 4467 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DEl_;
KW   Gypsy-17_DEl-LTR; Gypsy-17_DEl-I.
XX
NM   Gypsy-17_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4467
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 542-542 (2012).
XX
RN   [2]
RP   1-4467
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..4451
FT                 /product="Gypsy-17_DEl-I_1p"
FT                 /translation="MSRLNDFISENLRSSRKENIVALHKYVFERAGDRNNR
FT                 QRLRDFSGFDFDETSENYQAKVSYIQQHLSERDLASICNVLNITYNVDDVG
FT                 LHIFRNLLQNRLLAHNQIDSSDDEDEDVDVFESGRSTRIDMTEEENRTQNA
FT                 RISANSANQEPKTFCKDLAMPRFAFSFRDLEDSIRFFDGTNSISIESWLTE
FT                 FEEQAEIMCWNEVQKLIFAKKSLKGTAKLFVMSERGLSTWKALKTSLLNEF
FT                 KTVVSSKQIHEQLSKSKRDKEECSFAYLYRMKEMAIRGEISDSVLIQYVID
FT                 GIDDHPIDKTLLYGARNLSEFKEKLKSYVTKNEREKVYDREKPKRSEEMFH
FT                 SKKGATVNKNFKKEVTCYNCGEKGHVSNNCKNKERGTKCFKCNQYGHISRN
FT                 CDQNAKAENSKVNTHRVQSKSSFTSKEITIANKKCVALFDTGSKFSLVRED
FT                 LYDEIRRPKLQNCSVSLIGFGSEREASKINPIGHFKETIQIDKESFLLDFY
FT                 VVPIGCMDFKLIVGEELCLHAEIIFNRDGLQVRKMPSDDEQKNDFVNVMQI
FT                 DMAENNSELNINEQASAFAKAEVRKIVTNYKPLHTKTTKIEMRIVLKDDTP
FT                 IFARPRRLPFAEARLVEEQVEEWLQNGIIEESDSEFTSPVVMVKKRDGSPR
FT                 LCVDFRRINKVIVKDHFPLPLIDDQLDRLQDAKIFHTIDLKNGFFHVPVSE
FT                 SSRKFTSFVTQSGQYQFLKVPFGLSNSPGVFQRHVNAIFRQLTRKGIALPY
FT                 IDDVIIPALNEENAVLNLKEVIDTCAEYGLELNLKKCHFLKTRVQFLGHII
FT                 ENQKIYPTPEKIEAVSKFKSPQTLKQLESFLGLTGYFRKFIRDYAIISKPL
FT                 TDLTKNNTKFFMGPKEEMSVNNLKKILTANPVLSIYNQKLETEVHTDASID
FT                 GFGAILLQKSLDDGQMHPVHFMSKKTTEAQRKYTSYELEILAVIEALTKFK
FT                 VYLLGIHFKIITDCNAFTKTLDKQNLCTRVARWVLFLQEYDYEVEHRSGTR
FT                 MKHVDALSRYPVMTIVDQSLSLGILKAQEQDEHLRAILDILNDGKEAYNDY
FT                 FLKGGILHKLVSDAELVVVPRDMQRQIITRAHEQGHFASKKVKDLIRTEYY
FT                 IPGLEEKIQKVIDCCIPCILSNRKKGKQEGLLHPLDKGDVPLHTFHIDFLG
FT                 PLDSTNKDYKHILAVIDSFTKFCWLYPTKSTSSNEVIQKLRSQSAVFGNPT
FT                 IIISDRGSAFTSQDFLKYCDEENIKPIKSTTGLPRVNGQVERLNATIISVL
FT                 SKLSIDEPTKWYKHVNKVQQAINSTFSRSIATTPFELLVGTKMRTKEDIKL
FT                 QDLINKEAISAFNDERSDLRVKAKTQISKVQDENRKSYNLRRKQANKYDVG
FT                 DIVAIKRTQFGSGLKLKPKFLGPYKIVKSKGNNSYDVQKIGNFDGPINSST
FT                 CAEYLKRWSTPDEDDDAFEAKA"
XX
SQ   Sequence 4467 BP; 1498 A; 884 C; 961 G; 1124 T; 0 other;
     tttgggggct caaccgggat atgtggataa gtggataagt gactagtgaa aacctgaaaa        60
     aaaaaaacca tgtgtgtggt tcgatctgcg taaacttcta gaactttatt tcgtcgctgt       120
     aattttgctt ttttttaaca aacatgagcc gtttgaatga tttcataagt gaaaatttgc       180
     gcagcagcag aaaagagaac attgttgctt tgcacaaata cgtgttcgaa agagcgggag       240
     atcgaaacaa ccgccaaaga cttcgagact tttccggatt cgattttgat gagacctcgg       300
     aaaattatca ggcgaaagta agctatatac agcaacatct aagcgaacgg gacttagcat       360
     cgatctgcaa tgttttaaac ataacgtaca acgttgatga cgtaggactt cacatatttc       420
     gcaatctgtt gcaaaatagg cttctcgcac acaaccaaat cgactcatca gacgacgaag       480
     acgaggatgt cgatgtgttt gagagcggaa gaagtacaag aatcgacatg actgaggaag       540
     aaaacagaac gcaaaatgcg cgaatttctg cgaatagtgc gaatcaagaa ccgaaaactt       600
     tttgcaaaga cctggcaatg ccgcgtttcg cctttagctt ccgcgattta gaagactcaa       660
     ttcgtttttt cgacggtact aactcaatat ctattgaatc gtggttaact gagtttgaag       720
     aacaggccga gatcatgtgc tggaatgagg tgcaaaagtt aatattcgcg aaaaaatctt       780
     tgaaaggaac tgcaaaactc tttgtaatga gtgagagagg actaagcact tggaaagctc       840
     ttaaaacttc tctcttaaat gagtttaaaa ctgtagtaag cagcaagcaa atacacgaac       900
     agctaagcaa aagtaaacgc gataaagaag agtgtagttt cgcttacctg taccgaatga       960
     aggagatggc cattcgtggt gaaattagtg attcagtttt aatacagtac gtaatcgatg      1020
     gcatagacga tcatccaatt gacaaaacac ttctatacgg tgccagaaat ttgagtgagt      1080
     tcaaagagaa gttaaaaagt tacgtcacaa aaaacgaaag agaaaaggtg tacgaccgtg      1140
     agaaacccaa gcgtagtgag gaaatgtttc acagcaagaa aggtgcaaca gtgaacaaga      1200
     actttaaaaa agaggttacc tgttataatt gtggtgaaaa aggacacgtt tcgaataatt      1260
     gcaaaaacaa agaacgaggt acaaaatgct ttaagtgtaa ccagtacgga catatttcac      1320
     gcaattgtga ccagaatgca aaagctgaga acagtaaagt gaacacgcat agagtgcagt      1380
     cgaagagcag ttttacgagc aaggaaatta ctattgctaa caaaaagtgc gtggctctct      1440
     tcgacaccgg tagcaagttc agtcttgtcc gcgaagactt gtatgacgaa attcgacgtc      1500
     cgaagctgca aaactgtagt gtatctctaa ttggtttcgg gagtgagcgc gaagcaagca      1560
     aaataaatcc tattggacat ttcaaagaga ccattcaaat tgacaaggaa tcgttccttt      1620
     tagattttta tgtggttcca atcggttgca tggacttcaa attgattgtt ggtgaggaac      1680
     tttgcttaca tgctgagatt attttcaatc gtgacggttt gcaagtgcgt aaaatgccca      1740
     gtgacgacga acaaaaaaac gatttcgtaa acgtaatgca aattgatatg gctgaaaaca      1800
     atagtgaact taatattaac gagcaagcca gtgcgttcgc gaaagccgaa gttcgcaaaa      1860
     tagttaccaa ctacaagccg cttcacacaa aaacaactaa aatcgagatg cgcatagttc      1920
     taaaggacga tacgccaatt tttgccagac caagacgatt gccgtttgct gaggcgcgcc      1980
     tagtagaaga gcaagtagaa gaatggctac aaaatggaat catcgaagag tctgactccg      2040
     agttcacaag ccccgtagta atggtaaaaa aacgggacgg ctctccacga ctctgcgttg      2100
     attttcgaag gatcaataag gtaatcgtta aagaccattt tcccctacct cttattgatg      2160
     atcaactaga ccgtctacaa gatgcaaaga ttttccacac gatcgacttg aagaacggat      2220
     ttttccatgt acctgtctca gagtcaagcc gaaaatttac gtcctttgtc actcaaagtg      2280
     gacaatatca gttcctgaag gtgccctttg gcctttcgaa ttcgcctggc gttttccagc      2340
     gtcacgttaa cgctattttt cggcagctga ctcgcaaagg cattgctttg ccatacatcg      2400
     atgacgtcat cataccggct ttgaacgaag aaaatgcagt actcaatctg aaggaggtta      2460
     ttgacacctg tgcagagtat ggtcttgagc tgaatcttaa aaaatgtcat tttctaaaaa      2520
     cgcgagtaca attccttggc catatcattg aaaaccaaaa gatttatcca acaccagaga      2580
     agattgaggc tgtgtctaaa tttaaatctc cgcaaacttt gaagcagctg gaaagttttt      2640
     tgggacttac aggctatttt cggaaattca ttcgagacta tgctattata tctaaacccc      2700
     ttacggacct gactaagaac aataccaaat tttttatggg tccgaaagaa gaaatgtccg      2760
     ttaacaatct gaagaagata ttgaccgcaa atccagttct gagcatctac aatcagaaac      2820
     tcgagactga agtacacacc gatgcttcca ttgacggatt tggggcaatc cttttgcaga      2880
     aatccttaga cgacggtcag atgcatccag tacattttat gagcaagaaa accactgaag      2940
     ctcaacgaaa atataccagt tacgaacttg agattcttgc agtcattgaa gcactaacca      3000
     agtttaaagt ttacttgctg ggtatccact ttaaaataat aaccgactgc aacgctttta      3060
     caaaaacttt ggacaaacaa aatctttgca caagagtcgc tcgctgggtc ctatttttac      3120
     aagagtatga ctatgaggta gaacatcgat ctggaactcg tatgaaacac gtggacgccc      3180
     tgagccgtta cccagtcatg acaattgttg accaaagttt atcattaggt attctaaaag      3240
     cgcaggagca agatgaacat ctcagagcga tacttgatat tctcaacgac ggaaaagaag      3300
     cctacaatga ctatttttta aagggtggca ttcttcacaa attagtcagt gacgctgagt      3360
     tagttgtggt accgagagac atgcaaaggc aaatcataac aagagctcat gagcagggtc      3420
     attttgcgtc gaagaaagtt aaggatctga tcagaacgga gtactacatt ccaggtcttg      3480
     aggaaaaaat tcagaaggtc atagattgct gcattccatg tattctgagc aatcgcaaaa      3540
     agggtaaaca agaaggacta ctgcaccctc tggacaaagg agacgttcct ctacacacct      3600
     ttcatatcga ctttttaggt ccgttagact caaccaacaa ggattacaag catatcctag      3660
     cagtaattga ttcctttaca aagttctgct ggttgtaccc gactaagtcg acttcatcga      3720
     acgaagtaat ccaaaaactg cgtagccaga gtgcagtatt tggaaaccct acaatcatca      3780
     tctcggatag aggatccgca tttacttcgc aggacttctt aaaatattgc gacgaggaaa      3840
     acattaaacc catcaagtcg accacaggac ttccacgcgt gaatgggcaa gtcgagagat      3900
     tgaacgccac tataatttca gtcctctcga aattaagcat cgacgaacca acaaagtggt      3960
     acaagcacgt caacaaagta cagcaggcga taaactctac attttctaga tccatcgcca      4020
     caacgccgtt cgagcttcta gtaggtacca aaatgcgtac aaaggaggac atcaagctcc      4080
     aagacttgat aaacaaggag gcgatttcag cgtttaacga cgagcgaagt gatttgagag      4140
     ttaaagctaa aactcaaatc tcgaaggtac aagatgaaaa cagaaaatcc tataacttgc      4200
     gtcgcaagca agctaataag tacgatgttg gtgacattgt cgctattaaa aggactcaat      4260
     ttggcagcgg cctaaagctg aaaccaaaat ttttgggccc gtataaaatt gtcaaatcaa      4320
     aaggcaataa ctcctacgat gtgcagaaga tcggcaattt tgatggtcca attaattctt      4380
     cgacttgtgc tgagtatttg aagcgctggt caacacctga tgaagacgac gatgcattcg      4440
     aggcgaaagc atagcaggat ggccgaa                                          4467
//
ID   Gypsy-17_DEl-LTR repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DEl_;
KW   Gypsy-17_DEl-LTR; Gypsy-17_DEl-I.
XX
NM   Gypsy-17_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-357
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 543-543 (2012).
XX
RN   [2]
RP   1-357
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 357 BP; 134 A; 61 C; 82 G; 80 T; 0 other;
     tgtggggtgt gtctgcttta aggagcaagc atgccatacg tttaccctag acaacaacct        60
     ttaagctgaa cgagaactac gaaagatgtg cgatccaaaa gtaaagacga aagacgagaa       120
     gactacaaac tgaaattaaa gacgaacgac gaggatgagc aaaaagcgag agttggcttt       180
     atgcagacga cgagaagacg gggagttgag ttcgagcctt tgacgagagc ggttccaaga       240
     cgataaccaa ggacgtgaag acgagagagc ttgttcaatt taaattttgc taaagtgtat       300
     ttctatttct aatacttaat aattaatcaa taaacaataa taaactaaaa tcccaca          357
//
ID   Gypsy-17_DMel-I repbase;    DNA;    INV; 6216 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6216
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1049-1049 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..1326
FT                 /product="Gypsy-17_DMel-I_1p"
FT                 /translation="MANPNNLVRPPILNAPANQQQNQVXPINMASLQXEIR
FT                 XMVQRMIEDRLNPGIPQLVDQPVNIEGNNMNELDRIPDVVKCLREFSGQAG
FT                 EFSSWKKSVERILQIYSTTAGSPRYYGILNVIRNKIVGNADSVLESYQTPL
FT                 NWTAISKCLTTHYADKRDVTTLEDQMTSLIQGNQTVSEFYQRVYTHLSLIL
FT                 NKITCMEMSRDSMDLFAKSYQDKALDTFVRGLNGDLPRLLGSREPDDLPIG
FT                 SPVM"
FT   CDS           4710..6215
FT                 /product="Gypsy-17_DMel-I_3p"
FT                 /translation="KTNSILNNVIYRALLTVCAADVQITDYTNSDIVTLTT
FT                 GLAKVQTGIFRVIHIIDIKEYENTIDKINQTALMKLKTYDPILPFIKEEVR
FT                 ISKNLINSLKVRNIKKRHIDLIGSAWKWLVGSPDSRDFEIIQEKINSALTN
FT                 NNNQVILNRLIIEXINKITLANRNLINSLKYEGDAQRDTSTTLMFQIQMLK
FT                 EEILNLNQAIQWAKADISNPQILGDEEINEVKRVLDQNQLPYTNFEEAMHI
FT                 AEVNIASNGPMLIYIVKIPVTDTKLCEEILIKPIKIGKYVNKVETENVIRC
FT                 KDKIFAKTTKCNTYNKITICKHKNXIDISNSPCLSNLLKSRPATCIRINNQ
FT                 HIPTIDEIAPGVILLNKFSGKISVNGTTSTLSGSFVINFSNTTIEIDEQTF
FT                 TNKYTVHHQPMPAILQTEMTIKNLEEKLSLEFVKELNVNNTKTLELLKTTS
FT                 HTADILMGCVLITGIVVITIRILIKVTKVTKFHINRTTDDKPTNDRNEWGH
FT                 SILKAE"
FT   CDS           join(1187..1855,1813..2127,2103..2234,2244..2588,
FT                 2635..2934,2886..3080,3084..3263,3254..3532,
FT                 3453..3662,3765..3887,3877..4680)
FT                 /product="Gypsy-17_DMel-I_2p"
FT                 /translation="AEIQWIFLLSLTKTRPWTPLLEVSTAIYQDYWDPENQ
FT                 MTYRSALQLCEKLENQKFRINYANNNQANSRKFNSPPGPAPPLPRRNIQPN
FT                 SQTSRQQFFPQLAYMPQTPRWAYNQPQQKQQYYRSSNQPQGNHFLAPPPRP
FT                 SAPKPMGIDQSMQTRRINYMNRPFNDTITKRPLAQQTFGQTDKRQRNFHVT
FT                 TEDEQQYLENAEQYVSEVEGNIVRHKNMIKNRSGEHSEAQEYDQEQELDNN
FT                 EPLESDFVDLNFLKVTSSSLPYINCRIGERGMIKMLIDTGSNKNYIHPKCA
FT                 TNPKKKKLKTFSCKICWWHRFSDSPRNSQPVRVQKQPTRSGSKTVTSNFFV
FT                 LPALESFEALIGNDTIREIGIDIFSRRDSQTKNQINQQPSREVNNIRLKHA
FT                 NNTKTNYEKICSEFPKLFSDPNEKLTFTTKVVATIRSTNTDPIYSRHYPYP
FT                 EALRKEVGKQIQELLENRVIRPSRSPYNSPIWIVPKKIQNGDFCPCTVRKK
FT                 QVIFRYRFKKRFPSDSLKEIRHRENCFLSESGKYEFTRLPFGLKTPLYFKG
FT                 PRDILGDNVGVRCFVYIDDIFLFSKTEDSMQATLVKFSELQNRRQHASDIS
FT                 KIFRTLEEANMKVQLDKCEFFFKKEVEFLGFLIADGGIKTNPEKVRAVAEF
FT                 PIPTLKDLRSFLGLSGFYRRFIKDYAKLAKPLSALLRGEEGRGRISKTASS
FT                 KTLISLDDNAISCNKLKKTLASEEVMLIHPDFKKEMLAIIWAVQTLRNYLY
FT                 GSTKVKIFTDHESLTYATXPKSXNDQMKRXKATLEEYNHXLLHKGSQSSSR
FT                 RIKSXXKQPLKSIIMXFYTREVKVVADALSRPPVQXNDELNTPTATVHSSN
FT                 SPPEKLXSMATEPLNVFKNQKXXLKKRLSPSGLHSDEEIYPQHFSKFRTRF
FT                 SSKIVTDLKSSSRAHRSATENKQQILEDFYFPQMRAKIEKILKECSVCKEH
FT                 IYERHPNKPEIQRTPIPQYPGQIIHVDFYLTCKQVVLTAIDKFSKFAQAKI
FT                 VNSRATQDIKQPLKEILINFGIPEVVIIDNEKSLGSGPIMRMLQDQFNIEV
FT                 YKAPPYNSSANGQIERFHSTLSEIIRCQKAEKLHSSLNDLIERSVVKYNYS
FT                 IHSTTNRKPVDLFFGRKVSLDPKLLQTERQKITDKIKLKQEKDLGHHNKSR
FT                 NQIKNYNTSTATKKKLARKTETLRY"
XX
SQ   Sequence 6216 BP; 2352 A; 1312 C; 1098 G; 1424 T; 30 other;
     ggcgcccaac gttaaaaagg gcttgtgcgc ggtaataaaa tcaagttaag caacgcgaag        60
     tacgcgcaac ctgtaagtgc acccaattgg ctccctggtt attgtgatca cgttcgaaga       120
     aagcttttca tcatatccgt agtgaactgg gaaaccggaa aaaatcccat aagtgcaccc       180
     atttggctgc caaggattaa aacgaaccgc cgctgataaa cgcacccaat tggctgttcc       240
     agcgaagcaa tcaagtccaa gaagcaagcg aactcactta catcggcctg cagacgttgg       300
     tcgcagacaa ctggttcggt cgtgctggaa gaggtacccm agwagatcaa cgaaaaggaa       360
     gactacctac cagccagtcc aggatgtatt ttataatgta awtggtattg ggtgaaatca       420
     aaagaaatas ataatcaagt taagcaatac aaaaggaata aaccctaaaa taaaaattas       480
     gaaaaaagtc aattttaaat aattaaaatc aaatatcatt atttcttmat ttttgccaat       540
     tccgctcact tatttttgct actgccgaac taaaatttaa aaaaagaaaa aatggctaat       600
     ccaaataacc ttgtaagacc ccccattttg aacgcacctg caaaccagca gcagaatcaa       660
     gtccwtccca tcaatatggc tagtctgcag gawgaaatac gggwaatggt acagagaatg       720
     atagaggata ggttaaaccc agggatccct caattagtgg accaaccagt aaacatcgag       780
     gggaacaaca tgaacgaact ggacagaatt ccagatgtag taaagtgcct tagggaattt       840
     tcaggacaag caggagaatt cagttcttgg aaaaaaagtg tagaaagaat cttgcaaatt       900
     tattcaacaa cagccggctc acctaggtac tatgggattc ttaacgtcat caggaacaag       960
     atcgtgggaa atgctgattc ggttttagaa tcatatcaaa cccccttaaa ctggacggct      1020
     atctcgaaat gcttgacgac tcattacgct gacaaacgag atgtcactac actcgaggac      1080
     caaatgacgt ccctaataca gggcaaccag acggtatcag aattttatca acgcgtctat      1140
     actcacttgt cgctaatttt gaataaaatt acctgtatgg aaatgagcag agattcaatg      1200
     gatctttttg ctaagtctta ccaagacaag gccttggaca cctttgttag aggtctcaac      1260
     ggcgatttac caagattatt gggatccaga gaaccagatg acttaccgat cggctctcca      1320
     gttatgtgag aagttagaaa atcaaaagtt cagaatcaat tacgccaata ataatcaggc      1380
     caattcgaga aaattcaaca gtcctcctgg accagcacca cccttgccaa gaagaaacat      1440
     acaaccaaac tcccaaacat ctaggcaaca gttctttccc caattggcct atatgccaca      1500
     aactcctcga tgggcttata accaaccaca gcaaaaacag caatattaca gaagtagtaa      1560
     ccaaccacag ggaaaccact tcttggcacc ccctccacgc ccatcggctc caaagccaat      1620
     gggtatagat caaagtatgc agacaagacg cataaactac atgaacagac cttttaacga      1680
     caccataact aaaagaccat tggcacagca gacatttgga cagactgaca aaaggcaaag      1740
     gaacttccat gtgacaactg aggacgaaca gcaatacctg gaaaacgcag aacaatatgt      1800
     gtctgaagtt gaggggaaca tagtgaggca caagaatatg atcaagaaca ggagctagac      1860
     aacaacgaac cattggaatc cgacttcgtt gatcttaatt ttttgaaagt aacatcctcc      1920
     tccttaccgt acataaactg tagaatcggt gagcgaggaa tgatcaaaat gctgatagac      1980
     acaggctcca ataaaaatta tatacaccca aaatgtgcaa caaatccaaa aaaaaaaaaa      2040
     ttaaaaacct tttcatgtaa gatctgttgg tggcaccgtt ttagtgactc accacgtaat      2100
     agccaacccg ttcgggttca aaaacagtaa cctcaaattt tttcgtcttg ccagcactcg      2160
     agtcctttga ggcgctgata ggaaatgaca caataagaga aataggaata gacatatttt      2220
     caagaaggga ttcataatga tagcaaacta aaaatcaaat taatcaacaa ccctcacgag      2280
     aagtaaacaa tatccgacta aaacacgcca ataacactaa aacaaattat gaaaaaatct      2340
     gctcagaatt cccaaaactg ttcagcgacc caaacgaaaa attaacgttt acaacaaaag      2400
     tggtagcaac gattagaagt actaacaccg accctattta ttcaagacac tatccttatc      2460
     cagaagcact caggaaagaa gtagggaaac aaatacagga gttactcgaa aatagagtca      2520
     taagaccatc acgatcgccc tacaactctc cgatatggat cgtacccaaa aaaattcaga      2580
     atggtgattg attatagaaa gttgaatggc acggtacccg atcccagaca ttaattttgt      2640
     ccttgcacag ttaggaaaaa acaggttatt ttccgttata gatttaaaaa gcggtttcca      2700
     tcagattccc ttaaggaaat cagacataga gaaaactgct ttttgagtga atcaggtaaa      2760
     tatgagttta cgagattacc atttgggctc aaaacgcccc tttatttcaa agggcctagg      2820
     gacatacttg gagacaacgt cggtgtaaga tgcttcgtct atatagacga catcttctta      2880
     tttagcaaaa cagaagacag catgcaagcg acattagtaa aattttccga actttagaag      2940
     aggcaaatat gaaggttcag ttggacaagt gcgaattttt tttcaaaaaa gaggtagaat      3000
     tcctgggatt tttgatagca gacggtggaa ttaaaacaaa tccagaaaaa gtaagagctg      3060
     tcgcagaatt ccctattccc tagacactta aagaccttcg atcctttttg ggactttcag      3120
     ggttttatcg gcgtttcata aaagactacg caaaactggc taaacccctt tcagcccttt      3180
     taagagggga ggagggccga ggccgaatct ccaagactgc ttcaagcaaa actctaataa      3240
     gtctcgatga taatgcaata agctaaagaa aactcttgca tctgaggaag ttatgttaat      3300
     tcaccctgac tttaaaaagg agatgcttgc catcatatgg gcggtacaga cactccgmaa      3360
     ttacctttac ggttcmacta aagtaaagat tttcacagac cacgaatcac tmacgtatgc      3420
     cacaagwccc aaaagtwgga atgaccaaat gaagcgmtgk aaagcaaccc ttgaagagta      3480
     taatcatgaw cttttacaca agggaagtca aagtagtagc agacgcatta agtagaccac      3540
     ccgttcaaas aaacgatgaa ctwaacaccc ccaccgcaac agttcacagt agtaacagcc      3600
     cgccagaaaa actaawttca atggccacgg agccactaaa cgtcttcaag aatcaaaaat      3660
     amtgaaaata kgaaaccags cctcctataa atttgaaata atttwtccaa gcttcatagm      3720
     cataccatag aggawccctc attmgatttt ggaaaacttg ttgawatctt aaaaaacgac      3780
     taagcccttc tggacttcac tcggacgaag aaatataccc gcagcatttt agtaaattca      3840
     ggaccagatt ttcatcaaaa atagtaactg acctaaagag ctcatcgtag cgcaacagaa      3900
     aataaacagc aaatattaga agacttctat ttcccacaaa tgagagctaa aattgagaaa      3960
     atcttaaaag aatgcagcgt ctgtaaagaa cacatatacg agagacatcc gaacaaaccc      4020
     gaaatacaga gaacacctat accccaatat ccaggtcaaa ttattcacgt cgacttttat      4080
     ctcacctgta aacaagtagt cctcacagca atagataaat tttctaaatt cgcacaagct      4140
     aaaatagtca attctcgagc aacccaagac attaaacaac ccctgaaaga aatattaata      4200
     aacttcggta ttcctgaagt agtgataata gataacgaaa agtcccttgg atcaggtccc      4260
     ataatgcgaa tgctacaaga ccagttcaat atagaggtct ataaagcacc accctacaac      4320
     agctcagcca acggtcagat cgaacgcttt cattcaactc tttcagaaat tattagatgc      4380
     caaaaggccg agaaattaca cagttcacta aacgacctta tagagagatc agttgtcaaa      4440
     tataattatt caatacactc aaccacaaac aggaaaccag tcgatttatt ctttggcaga      4500
     aaagtatctc ttgaccctaa actactacag acagaaagac agaaaattac ggacaaaatc      4560
     aaactcaagc aggaaaaaga tttaggccac cataataaaa gcaggaatca gataaaaaac      4620
     tacaatacta gcacggctac aaaaaagaaa ttggcaagga aaacagaaac actacggtac      4680
     tagcagaaag cgggaggaat aatttataaa aaactaactc gatattaaac aacgtcattt      4740
     acagagccct tctgactgtg tgtgctgcgg acgtacaaat aacggactac actaattctg      4800
     acattgtgac actgactaca ggactagcca aggttcaaac ggggatcttt cgagtaatcc      4860
     acattattga cataaaggaa tatgaaaata caattgataa aataaaccag acagccttaa      4920
     tgaaattaaa aacttacgac ccaatcctac ccttcataaa agaggaagtc aggatttcta      4980
     aaaacctaat caatagcctg aaagtcagga atataaagaa aagacatata gatctaatag      5040
     gtagtgcttg gaaatggctg gttggatccc cagacagcag agattttgaa ataattcaag      5100
     aaaaaataaa ttcagcttta actaacaaca ataaccaggt tattcttaat aggcttatca      5160
     ttgaamaaat aaataaaatc actctggcca atagaaattt aataaacagc ctaaaatatg      5220
     aaggagacgc tcaaagggat actagcacta cattaatgtt tcaaattcaa atgcttaaag      5280
     aagaaattct taatcttaat caggccatac agtgggcaaa agcagacatt agcaaccccc      5340
     aaatactagg agacgaggag atcaatgaag ttaaaagagt attagatcag aatcaattac      5400
     cctacacaaa ctttgaggaa gccatgcaca tagcagaagt aaacatagca agtaacggac      5460
     caatgttaat ctatattgta aaaatccctg taaccgatac caagctatgc gaagaaattc      5520
     taattaaacc aataaaaatt ggtaaatatg tcaacaaagt agaaaccgaa aatgtaatta      5580
     gatgtaaaga taaaatattt gcaaaaacta caaaatgtaa tacttataat aagataacga      5640
     tttgtaaaca taaaaacakg atagatatta gtaattcacc ttgcctatca aatctcctaa      5700
     aaagtcgccc tgctacctgc attagaatca acaaccaaca catccccaca attgatgaaa      5760
     tcgcacccgg agttatctta ctcaacaaat tcagcggcaa gatctcagtc aacggaacaa      5820
     cgtcaacact tagtgggtca tttgtcatca acttcagcaa caccaccata gaaattgatg      5880
     aacaaacctt tacgaacaag tacaccgtac accatcaacc tatgccggca atcctccaaa      5940
     ccgagatgac aattaaaaac ctagaagaga aactatcact agaattcgtc aaggaactta      6000
     atgtcaataa tactaaaacc ttggagctgt taaaaacaac ctcccacaca gccgatatac      6060
     tgatgggctg cgtcctaatc accggaatcg tcgtaataac gatccgcatc ttgattaaag      6120
     ttacaaaggt tacaaaattc catatcaacc gaaccaccga tgacaaaccg accaacgacc      6180
     gcaacgagtg gggacactcg attttaaagg cggagg                                6216
//
ID   Gypsy-17_DMel-LTR repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-379
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1028-1028 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 379 BP; 127 A; 82 C; 81 G; 85 T; 4 other;
     agttaacacc aaaagaatta gcaacaacaa tctgcgaagg cttgcacgcg catccgcttg        60
     ctcaacactc gkcaacagag gtacttgggg tcgcacgagc gtccgttgcg aaacatacgt       120
     tgcacctgca caacataaaa gtgcagacgt agcgtctgcc caatttccgt gagaatcagc       180
     gaaccagcga gtgcagcaaa aatcaaagca gcgcagcacc gacgcmggca gcataggtgg       240
     gtaggcgaag ttwggtaggg acaaatttgt maaactaaaa tcagttctgt ttttgcaatc       300
     aattaataaa gaccttatgg tcctaaacac aaataaaaaa aatatttttt tattaaattg       360
     aaactctttg gagttaact                                                    379
//
ID   Gypsy-17_DMo-I repbase;    DNA;    INV; 4061 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4061
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(57..2339,2266..3867)
FT                 /product="Gypsy-17_DMo-I_1p"
FT                 /translation="MEQQNKNXIELVKALQSTAAETTNNKTIVLPKFNAEV
FT                 AGADAAAWCATVNIIKGSALVMALSAALEGSASQWLPQTCXPDITWAEFKE
FT                 LFVQRFTSVETPAATFFAMLSSCPADGECLSNYASXMMTSLTAKWREMDVE
FT                 HVDPRLQRLTFTSNLRTRNELQSXLKAFTFNKRKKAPQDDSAPLDMKRQKL
FT                 SIIRCHHCGRMGHKIIECRARLQPNFPPHVAERNGKSASGHHHPSSVTCYK
FT                 CGEAGHISTYCSKPKTEKDKGAHQEKRVHLCEVVEPKGEMVHQGETFITTF
FT                 DSGAECSLVKEKISSKLVGKRIKNVVMLKGIGNGSICSTLQILSNVRINNY
FT                 CIEILFHVLGDENLKNDVXIGREILSNGFHIIMSPGKFXVIRSKIVNRCSN
FT                 DNIFVELNTDLVDEDKDTLTSILEKYSKSFIXGIPFSRVNTGDMKIKLIDP
FT                 RKTVQRKPYRLSPNEKELVRDKIRELVECKVIRPSCSPFASPMMLVNKKDG
FT                 SHRLCVDYRELNANTVSDRYPLPLIADQIARLHGAKYFTCLDMASGYYQIP
FT                 MHEDSIEFTAFVTPDGQYEYLSMPFGLKNAPSVFQRTVMQTLGELANTFVV
FT                 VYMDDVLIVGATISEALERPXVTLDLLTKAGFSFNIKKCSFLKSTVQYLGY
FT                 EVSAGQIRPNPLKASALTALPPPKSVSALRQFIGXASYFRQFIQGFSCLMK
FT                 PLYILTSEKNEFVWKPEHEQIRQKVVSLLTQKPVLVIFDPQYPIELHTGCK
FT                 CSRIRSHSITSLTPNTQLSCIPDASALGYGAILLHRINNKPHVVEFFSKAT
FT                 SPAESRYHSYELETLAVVMAIKHFRHYLTGREFVVFTDCNSLKASRTKRDL
FT                 SPRAXRWWAYLQTFTFDLQYREGKRMAHADFFSRNLPSTNAINIYKIQEKR
FT                 VNLSEISSDWXMAEQRKDVDISNIVKELKENSLPEDLIKTYELRGGILYRK
FT                 IQRNGRTRSLPIVPRAFRWSVINQIHESIMHLGWEKTLDKAYDYYWFENMS
FT                 KYIRKFVESCITCKISKSSSGKTQVRLHPIPKVDTPWHTIHIDITGKLSGK
FT                 SDQKEYVIVQIDAFTKFVYLTHTVKIDAESCISAVTSAVSLFGVPNRIIAD
FT                 QGRCFASTKFSEFCSKQNICLHLIATGASRANGQVERTMNTLKNLLTAVET
FT                 SNRSWQDALGEVQLALNCTASRVTKASPLELFIGKVARPLGLLPLCDTTHE
FT                 VDLVESRARAAENISAAGAYNKARFDKTKAKVVRYKIGDFVLLRNEERHQT
FT                 KLSPKFRGPLQIFELLDGDRYILKSLTNNRKYKE"
XX
SQ   Sequence 4061 BP; 1309 A; 742 C; 905 G; 1091 T; 14 other;
     cagaagtggg atctggctca ctatctaaca cttcgaatga gccatggcga atattaatgg        60
     agcaacaaaa taaaaatkta atcgagcttg taaaagcgtt gcaatcaacg gcmgctgaaa       120
     caacaaataa taagacaata gtgttgccaa aattcaacgc agaagttgct ggcgccgacg       180
     cagcagcatg gtgcgctaca gtgaatatca tcaaaggcag tgcattagtg atggccttga       240
     gtgcagcgtt ggagggcagt gcatcgcagt ggctcccwca aacatgcwat cctgacataa       300
     cttgggccga attcaaggaa ctttttgttc aacgctttac cagtgtagaa acaccagcag       360
     ctactttttt tgcaatgtta tcaagttgcc cggccgacgg agaatgcctc tcgaattacg       420
     ctagcsgcat gatgacatca ctcactgcta aatggcgtga gatggacgta gaacacgttg       480
     atcccaggtt gcagcgattg actttcacat cgaacttgcg cactaggaat gagctgcaat       540
     ccgawcttaa agcttttacg ttcaataaac gcaagaaagc tccacaagat gactcggctc       600
     cactggatat gaagcggcag aaactgtcaa taataagatg tcatcactgt ggaagaatgg       660
     ggcacaagat cattgagtgt agagctagat tgcagcccaa ttttcctccc catgttgcag       720
     agcgtaatgg caagagcgca tctggtcatc atcatccatc aagtgtgact tgctacaagt       780
     gtggtgaggc tggccacatt tcaacctact gcagtaagcc taaaacggaa aaggacaagg       840
     gtgcgcatca ggagaaacga gtgcatcttt gcgaagtcgt cgagcccaaa ggagagatgg       900
     ttcatcaagg agaaactttc ataacaacgt tcgactcagg agcggaatgc tcattggtca       960
     aagaaaagat aagttctaag ttagttggta aaagaattaa aaatgtagtc atgttaaagg      1020
     gtattggcaa tggtagtatt tgtagtacat tgcaaatact tagtaatgta agaattaaca      1080
     attattgcat tgaaatacta ttccatgttt tgggggatga aaacttgaaa aatgatgtcg      1140
     wgattggtcg agaaatattg tctaatgggt ttcatatcat tatgtctccc ggaaaatttg      1200
     wagttatcag atcgaaaatt gtaaaccgtt gttcaaatga taatatattt gttgaattga      1260
     ataccgatct cgttgacgaa gataaagata cgctaacctc catattggaa aaatattcaa      1320
     aatcttttat taamgggatt cctttttcga gagttaatac aggagacatg aaaattaaat      1380
     taatagaccc tagaaaaact gtgcaaagaa aaccgtacag acttagtcca aatgaaaaag      1440
     agttggtacg agacaagatt agagagttgg tggaatgcaa agttatcaga ccaagttgct      1500
     caccatttgc aagtcctatg atgttagtaa acaaaaaaga tggctcccat cgactgtgcg      1560
     tcgattaccg cgaattaaat gctaatactg tttcagatag gtaccctttg cccctcatag      1620
     cagatcagat agcaagactt catggagcga aatatttcac atgtttagat atggcaagcg      1680
     gatattacca aatccctatg catgaagatt cgatcgagtt tacagctttt gtcacccctg      1740
     atggccagta cgagtatttg tcaatgccgt ttggtcttaa aaacgcgcct tcagtctttc      1800
     agcgtacagt tatgcaaaca cttggagaac ttgcaaatac atttgttgta gtttatatgg      1860
     acgacgtatt aattgtgggt gcaacgataa gtgaagcctt ggaaagacca cakgtcactc      1920
     tggatcttct tactaaagcc gggttttcgt tcaatattaa aaagtgttcc ttcttgaagt      1980
     cgacggttca atatttagga tatgaagtaa gcgcaggcca aatacgccca aatccactta      2040
     aagcctcagc actaactgct ctaccacctc caaagtcggt ttcggcttta agacaattta      2100
     tcggatkagc atcatatttt cggcaattta tacaaggatt ttcgtgtttg atgaagccat      2160
     tatatatttt gacgtcggaa aagaatgagt ttgtctggaa gccagagcat gaacaaataa      2220
     gacaaaaagt tgtttccttg cttacgcaga agccagtctt agtaatcttt gacccccaat      2280
     acccaattga gttgcatacc ggatgcaagt gctctaggat acggagccat tctattacat      2340
     agaatcaaca ataagcctca tgtcgttgag tttttcagta aggcaacttc ccctgctgag      2400
     tcacgatacc attcttacga attagaaacc cttgcggttg tcatggccat aaagcatttc      2460
     cgacattatt tgacgggcag agagttcgtc gtttttactg attgtaactc actcaaagca      2520
     tcaagaacta aacgcgacct atctcccaga gcacwaaggt ggtgggcata tttacaaacg      2580
     ttcacgtttg atttgcagta tagagagggc aagagaatgg ctcatgccga cttcttttcg      2640
     agaaatcttc catccactaa tgcgattaat atttataaga tccaggaaaa gcgagttaat      2700
     ctttcagaaa tatctagtga ttggcwaatg gctgaacagc gcaaagatgt tgatatcagt      2760
     aatatcgtga aagagttgaa agagaattct ttgcccgagg acttgataaa aacttatgag      2820
     ttaagagggg gaatattata tcgcaaaatc cagagaaatg gtagaactcg atccttgcca      2880
     attgtmccta gagcgttcag atggtctgta ataaatcaga ttcatgaatc aatcatgcat      2940
     ttaggctggg agaagacgtt ggataaggcc tatgactatt actggtttga aaacatgtcc      3000
     aagtatatac gaaagttcgt cgaaagctgt attacttgca agatttcaaa gtcgtcttca      3060
     ggcaaaactc aggttagact tcatcctata ccaaaggttg acacaccgtg gcacacaata      3120
     cacatagaca taacaggaaa actaagtggg aagtctgatc aaaaggagta cgttattgtc      3180
     caaatagatg ctttcactaa atttgtctat ttaacacaca cggtcaagat tgatgctgag      3240
     agctgcataa gtgctgtgac atcagctgta tcattgtttg gagtaccaaa ccgcataatt      3300
     gcagaccagg gtaggtgttt cgccagcaca aagtttagcg agttttgttc taaacagaac      3360
     atatgcttgc atttaattgc gacgggtgcg agtagagcaa acgggcaagt tgaacggact      3420
     atgaacacct tgaaaaatct gttaactgca gttgagacaa gcaatcgatc ttggcaggac      3480
     gcgttaggag aggttcagtt agccttaaat tgtacagcaa gtcgtgtaac aaaggcaagt      3540
     cctttagaat tgtttattgg taaggttgct cgtccgttgg ggttgctccc actgtgcgac      3600
     acgacacatg aggtcgattt ggtagaatca agagcacggg cagcggaaaa tatttcagca      3660
     gcaggagctt acaataaagc gcgatttgat aaaaccaaag ctaaagtagt tagatataaa      3720
     ataggcgact ttgtgttgtt gaggaatgaa gaaaggcatc agacgaaatt aagtcccaag      3780
     tttagagggc cgttgcagat atttgaactg ttagacggag ataggtacat tctcaagtca      3840
     ttgacgaata atagaaagta caaggaatga agaaaggcat cagacgaaat taagtcccaa      3900
     tgggttcagg gtataaaaag aaatatatat agttgtaatt gatcaattta tgagataaag      3960
     cgaaaattat atcttatgct taataattgg taaataaatt gatgtatgtg gaaaagcttg      4020
     ttataatatt acacgaggcc gtgttaaggt caggatggcc g                          4061
//
ID   Gypsy-17_DMo-LTR repbase;    DNA;    INV; 508 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-508
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 508 BP; 122 A; 90 C; 134 G; 162 T; 0 other;
     tgtcgaagcg caagtagtat taatatattg gcgcgcactg taattgcgct ttctacctac        60
     ttgcctattt ccctttttgc atgccttcgc acttgtgtgt gtgtgagttg agcctgtgtg       120
     ttcgatgccc ttgaacaaag aatgctctat gacagagtat ggtggttgtt ttggtcacac       180
     atgagcgcaa cttgcatagt taagttattg agagtatttg gtggtcagta tgtgaaatag       240
     gagctgcttg ctatttcgcg actgttgtaa tttcataaga atattgcgtc agccgtttgg       300
     tgcattgtaa ttggtcgaat atgatttgta gcatagaaat gtcccgttgt agctgggcga       360
     cagcgtttgc agctgtcgct gagtgtggtt cggtggcaag cacaagaaat agttgagaca       420
     aagaggtcag taacgtttgg aacttgtccg tcgccgaaac tcgctggtgc ttcaacaatg       480
     gataaagaga atactagtgc ttcaacat                                          508
//
ID   Gypsy-17_DRh-I repbase;    DNA;    INV; 5326 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.08, Created)
DT   14-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DRh_;
KW   Gypsy-17_DRh-LTR; Gypsy-17_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5326
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1583-1583 (2012).
XX
DR   [1] (Consensus)
XX
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2672..4735
FT                 /product="Gypsy-17_DRh-I_1p"
FT                 /translation="MNRFQRVFARSDDDSGHTNLTRHVIDTGLSRPIKQPV
FT                 RRLALARKAEVEELVADMKLRGIIRPSTSPWASPVVLVRKKDGSTRFCVDY
FT                 RRLNDITIKDSYPLPRMDDILTTMHGACWFSTMDLQSGYWQVEMDDASRAK
FT                 TAFTCDAGLFEFNVMPFGLTNAPATFERLMDGLFSGPAWKSTLVYLDDIIV
FT                 YSRTAEDHLDHLQQVLDKLQSAGLKLSPRKCHFFRTEVSYLGHIVSHKGLR
FT                 ACPEKIRKVIDWSPPRNKKEVRSFVGLCSYYRKFIPDFATIARPLHELTET
FT                 KRAFTWTSSAHDAFETLKIKLTTPPILTFPASNGVFVLDTDASNHGAGAVL
FT                 SQQQEGQEHVLEYYSKSFNAAERNYCVTRRELLAVVLSTKHFHHYLYGRKF
FT                 LLRTDHSSLRWLFNFREPEGQLARWIERLQQYDMDIQHRSGKLHGNADALS
FT                 RRPCGECRICTKAEQNDGQGILFLQAQPVDIAISQEKDPTLSLILQWLKTG
FT                 ERPTKSTTWSESPETKAYWHLFEHLFVERGLLMIKTKTADEALVVPRSLQE
FT                 EALRSAHNSTTGGHFGIKKTVAKLKQRYFWIGQTADVALWCARCTECNARK
FT                 GPTRRTVGQLQPRVLGAPFERLAIDILGPLPTTTHGNRYIAVVMCYFTKWP
FT                 ECIALPNQTAETVARALIQEVFCRFGAPAFILPRRGEDS"
XX
SQ   Sequence 5326 BP; 1296 A; 1629 C; 1335 G; 1062 T; 4 other;
     ttggtgccag gtgtggggtc actagggttt gcgagaaccc tgacctgcgt caaaatgcct        60
     aagaattccg cccgccaccg ccgtcaagca tcgccagcag ggtgtagttt agaagatccg       120
     caggatggag ctgccgcgct ggatgcagtg ggccgcgcca tcaaccgctc gttccgcctg       180
     atcgaacaaa aagtggaggc gttggatcag tcgctcaacc tcaagttcga gcagaagttc       240
     gaacaaatgt gggcgacgtt cgagaggacc atgctgggca acagcgaagg cgtgaacaaa       300
     gcagggggtg agcgacactc cgccagcacc ccgtgcttag ctgaaatggc caatgccgtt       360
     caggacagcc gcagcaagtg tttccacgga gaatggacgg cattccaggg accgcgtcga       420
     tggctgccca tcgtccagtc ggagacataa cctcacaatg gggaattctg gaggtgtcgg       480
     atacagagcc gcctcctacc ttcgatggaa cacgtccctg gcccgaattt caacgcctac       540
     ttgacgacat ggccgaagaa taccactggt cggagaggaa gaagtgcaga aagttgtata       600
     cgagtctgcg tgggcgtgct cagcgttttc acgctaccct accagaagcc actctcagct       660
     catacaactc cctgacagcc gccatgcgcg aatactttac aatcagtaag cacaccggct       720
     atcacacctt ccacaatcgt atgcagggac cacgagagtc tttcgaggac tttgcactag       780
     agctggaacg cctgggcaga gctgtatttg gggagttacc aaccgccacc tacgacagca       840
     tcatcgtgca gcgttttatt agcagccacc cgcgctctct aacggatgcc ctcgatacgg       900
     cgtgccgcat tgaagcccag tgccgacgac gtccagccgc cgcagtaatg aactttgctg       960
     ccgaaaccat agaagatccc ctagtctctc caggaagaag aacccgagga tcaggaagcc      1020
     ataacccgag aggaccgggg ttttcaacta actccgtgcc gctatcggga aactagctac      1080
     cgtcagcctc tcggggcgga ggttgacagt caacaccgta agccccagtg agcagccgct      1140
     cacccccccc attccccaac ggcggttccg caaccaccgt acgtctccgg ctcaccctca      1200
     atcgctcacc gcacctgccc gggttactga atccggttcc aacacctgta acgccccgcc      1260
     gcacctccac tcgatgccac cgcctaccga gcaacccggc gcccgactaa atgctcctcc      1320
     aaatggagtg gaagccatcg tggccccctt gcccccagag ccgtcgcccg aagagagtgc      1380
     cgcgcagtcc acggacatcg agcttacagc gaaccggaat acccacacag cacgccgacc      1440
     gacgggttcc caacagtcga gacctcccca ccaagtagct gccagaacgg gcccacctta      1500
     cgacgaaacg caggccgtcc gttcgcggcc gttgcagaag ccgccgccaa ccgagcaacc      1560
     cggcgcccga ctaaatgctc ctccaagtgg agtcgaagcc atcgtggccc cctttccctt      1620
     acgccgccgc caatcgagca acccggcccg tgctctccaa gtggagtcga agccatcgtg      1680
     ccgctcaatc tcaggaaata gagtttgccg cactccggag cgcccgcacc ctacgtagac      1740
     caacgagttt acagcttacc ccggagccgc cgtccggcga gatcgccaac gtaccgccgc      1800
     ccgctccact agaaaccggt tccatccgat atgccgccgc cgccgagtcc tatgggaaac      1860
     taccgccgcc gcttgcagaa ggagaagaac tgaactcacc ccccgtggac accgttttgg      1920
     gccgattgtt cgctgaacac ccatccggaa agatgccact aatgccgtca atcgcggcga      1980
     aacggacaac tacaaaccct atacaatatg accatcgcgg gagccagtct atgcccgccg      2040
     aagctacgta tacctgtagt gccgttggag gccaacattt acattgtttg atcttctcgc      2100
     agaaacatcc tacgagtcgc cgccagactt gttgttgccg gaaggccagt tgatcacgaa      2160
     ttcctgctag tggaaggcag caccccaagc ctgttaggca tggactttct gctgcaatat      2220
     aaggcaaccg tagacttgaa agatcttcag ttacggttcc cgtggggatc cttgccgcta      2280
     tatgccccga ctacggaaca gcgaaatcta ctttattcga ccgcgccaag taacatcctg      2340
     ccatatagcg acacccactt aacggttcga tgcatgtcgg aggagcagct gcccgcagct      2400
     ctgttggaac gtggagctca ctcccaattg ccccccaaaa ttctactagg aagcaccctg      2460
     ctggacacca cgaccaacac cagcacactg catctagtga atctcagcgc gcacacgtat      2520
     tctctcagcg caaacaattg tgggacaagt ggaagcagta gaggttctgg aaacccctca      2580
     ggatcaagac ggaaacgatg aagcaacttc ccacaatggg gaagtacccc ccgagttgcc      2640
     accccctctt cgctccaagt ggacggcctt gatgaaccgc ttccagcgag tgtttgcccg      2700
     aagcgatgac gactccgggc ataccaacct aacccgccat gtgatcgata cgggtctatc      2760
     taggcctatc aagcaaccag tgcgtcgtct tgcgctggca aggaaggctg aggtggaaga      2820
     actggttgcc gacatgaagc taagaggcat aattcgcccg tccacaagcc cgtgggcctc      2880
     accggtcgtt ctagtaagga aaaaggacgg ttccacccgg ttctgtgtgg attatcgacg      2940
     tctaaacgat atcaccatca aggattctta tcccctacca aggatggatg acatcttaac      3000
     cacgatgcac ggcgcctgtt ggttctccac aatggacctt cagagcggtt actggcaggt      3060
     ggaaatggac gatgcctcaa gagccaagac cgcttttacg tgtgatgccg gtctttttga      3120
     atttaacgtg atgccgtttg gcctgaccaa cgcgccagcg accttcgagc gtttaatgga      3180
     cggcctattc tccggacctg cctggaaatc cacactagtt tacctcgacg acatcattgt      3240
     gtactctcgg acagcggaag accatctgga ccacttgcaa caagtcttgg ataaattgca      3300
     aagcgcagga ctaaagctga gtccccgcaa atgccatttc ttccgaaccg aggttagtta      3360
     cctgggccac atagttagcc acaaaggctt acgggcgtgt ccggaaaaga ttcgaaaagt      3420
     catcgattgg tcaccccctc gtaacaagaa agaggtacga tccttcgtgg gcctctgttc      3480
     ctactaccgc aaattcatcc cggacttcgc caccatcgct cgcccgctac atgaactaac      3540
     ggaaactaag cgtgccttca catggacctc atcggctcac gatgcctttg aaacgcttaa      3600
     aattaagctc accacaccgc ccattctaac gtttcccgct tctaatggtg tattcgtttt      3660
     ggatacagat gcgtcaaacc atggcgcggg cgctgtgctc agtcaacaac aagaaggaca      3720
     ggagcatgta ctggagtatt acagcaaatc atttaatgct gctgaacgca attattgcgt      3780
     aactaggaga gagctgctag ccgtggttct atctaccaaa catttccatc actacttata      3840
     tggccggaaa ttcttgctgc gcacggacca ctcgtctctc cgatggctgt tcaactttcg      3900
     ggaacccgaa ggacaactcg ctcgctggat tgaacgcctc cagcaatacg acatggatat      3960
     ccagcaccgc agtggcaagc tgcacggtaa cgccgacgcc ctgtctcgcc gcccctgtgg      4020
     tgaatgccgc atatgcacta aggcagaaca aaacgatggt caagggattt tgttcttaca      4080
     ggcccaacca gtcgacattg ctatcagcca ggaaaaagat cccactttgt cgttgatcct      4140
     gcagtggtta aaaacaggag aacgaccaac taaatccaca acatggagtg agagccccga      4200
     gacaaaagcg tattggcact tgttcgaaca ccttttcgtg gaaaggggtc ttctaatgat      4260
     taaaaccaaa acagcggacg aagccttggt agtgcctcgc tctcttcagg aagaagctct      4320
     gcgcagcgct cacaactcta ccaccggcgg acacttcgga attaagaaga cagtcgccaa      4380
     gctcaagcaa cgttactttt ggatcggaca gactgctgac gtagcccttt ggtgcgcacg      4440
     ctgtaccgaa tgcaatgcca gaaaaggacc tactcgccgt acagtgggcc aactacaacc      4500
     ccgcgtccta ggtgctccat ttgaacgact tgcgatcgac atactcggcc ctctgccaac      4560
     taccactcac ggaaatcgct acatcgctgt ggtgatgtgc tacttcacca aatggccgga      4620
     gtgcatagct cttcccaacc aaaccgccga aacggtagct cgagcactca tccaagaagt      4680
     gttttgccgt tttggtgccc cagcgtttat ccttcctcga cgtggagaag actcgsacca      4740
     mgccgccgca mcctcgagtc ggacgggatg gtcgagagat ttaatcggac cctcctggat      4800
     tacctggcca aatttgttgc gaccgatcaa cgcgactggg accaactgtt gccgctagct      4860
     ctctgggcct atcgtcggct ccacatgagg caactgggtt ttcaccgtcg ttactgtgct      4920
     gggcgggact ccggctaccg agcgaactgc tgtatggacg accatccccc catccggata      4980
     gttatcccgc ctacgtggaa caattgcaga atcgcctccg actcacacaa cagattggac      5040
     gacgaaactt gatggcagcc gctaacgtta acaagttacg ctacgacctt cgatcgcatc      5100
     cagttgaatt cgccgttgga gaagaggttt ggctctactt ccctacacka agagtggccg      5160
     atgcccgaaa ctgcagtctg attggattgg acccgccgtc gtcacccgcc gtctaccagg      5220
     accgggggcg tgccaccagg accgtccatg tcaaccgatt ggccccttac cgaggcccaa      5280
     gtccagccgt actcggccag gagactcgag tctgagaggg gggtaa                     5326
//
ID   Gypsy-17_DRh-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.08, Created)
DT   14-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DRh_;
KW   Gypsy-17_DRh-I; Gypsy-17_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-375
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1584-1584 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 375 BP; 94 A; 94 C; 90 G; 97 T; 0 other;
     tgtaacgaaa gccgccgaaa accttgggct ttcgatagtc ggctaggtgg caacgcttca        60
     agcagcgcca aaatgagact ttgacagccc ggctgcctgg tctctttatt tttctctctg       120
     ttcccttatt ccttgattcc ttcttccttc ttctaaaaac gagattagaa aaaagcacat       180
     ggcgcctcgt gcgctctgtg agtagaagac ccaataaagc tgcgaaataa ttaagaacta       240
     cgcgtgtgtt tttggttgag cttaggcgag gaagtgggca ttgacgggat cgtgaccgca       300
     caccgatcta aaaagaagtt ccgctcggct ttccgtgacg agatccgccc ttccacggcg       360
     gcaaaaatcg ttaca                                                        375
//
ID   Gypsy-17_DTa-I repbase;    DNA;    INV; 4038 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DTa_;
KW   Gypsy-17_DTa-LTR; Gypsy-17_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4038
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1628-1628 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3301-3615] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1754..3316
FT                 /product="Gypsy-17_DTa-I_1p"
FT                 /translation="MVLRDSFPVPLMDDVLEKLQTAKVFTVMDLENSFLHV
FT                 PIEESSRRYTAFITKEGLFEFCKAPFGFCNSPAVFNRFVNCVFQDLIQDDL
FT                 MQIYVDDIIIFAQTDEECIMKLEKVLQEAAKYGLEIKWKICHFLEKRISFL
FT                 GHTIEDSKIWPGLEKTLAVQKFARPKNVKDFQSFLGVTGVFRKFVRGYALI
FT                 ARPLTNLLRKDVEFKFEAAEINAMKELKDILSTELYIDASMNGFVGILMQR
FT                 FDGELHPVAFWSKKTSCADAKRHSYILEVKAAYLAVKKFRHYLLGIEFKLV
FT                 TDCAAFSQTVKRRDVPREVADWILNLEDFTFHVEHRAGEKMKHVDSLSRHP
FT                 VDVFTVTSEVSVQVKMAQQKDNYISVILILKSQLYKDFQLNGGILFKVVDG
FT                 NDVMVVPKSMEYEVIKEANDVGHFALQKTMHALQQQFWIPHMEKKVAQIIN
FT                 NCVKRILINKKVGKQKGLLYCIEKGDKPLHTLHVDHLGPMDATSKQYRFVF
FT                 AAVDPFTKFVLLFPTKITGSWRNGR"
XX
SQ   Sequence 4038 BP; 1313 A; 759 C; 968 G; 981 T; 17 other;
     tttgggggct cgatccggtc aactcgttgg acacgccgat tacaagctca tcagctaaat        60
     cgaaangttg cgaaattgag gcgtcacaac gtcgtcagaa aacagtgaat acgaaagtat       120
     gagtgaaggg gaaatagaaa aaggaagaca gagaattggt gctttaactc ggttgcagaa       180
     aaatcgcaac gagtcaaacg agcgagaagt gaaaattgag caaagagaaa aggaacgcca       240
     aaatataant ctatccgaaa tgaatancga aagtcttggg aaaataattc agcttcttac       300
     gctgaaaatt aatgcagacg aaattgcgga aagagatcga aataggccaa caatttcagt       360
     ggacaacttc gcgaacnatg ttccagactt tgacggagta gagtattcct gtggaacagt       420
     ggttcaacaa ttttgagcaa aatgctgacg cgtatggact aagtgatcag caaaaatatg       480
     tacaagcacg aggaaagatg gtaaagctgg ccaagctgtt cctggagtcg gaagtcatta       540
     attcgttcga tcagctaaaa aatagngcta atgggagagt tcaagcgcac aatgcgaagc       600
     gccgatctac atgccaaact agcagaaagg aagaaagaga acgacgagag ttttcaggag       660
     tacatattaa taatganaaa tatagcttta cagggctcaa ttgacggaga gtctctcatt       720
     gcgtacattg tggatggttt tggatatacc aagtgagttt aagtttaact tgtacagctg       780
     taaggagttt caagagctaa aagaaaagtt cgagatatac caacgcaagt gtcaatcgaa       840
     caancaagtc aagcagcaca gtggtgccaa aaaaaacatg tctactgtaa ccagccgcac       900
     cagtcgttgc tttaattgtg gatcagcgga ccacctgngg aaggactgca agacggacac       960
     caaatgcttt aaatgtgntg gtatnggaca tatttctaag gactgtccac aggtgaccag      1020
     atctgtgcaa gtgatcaaat catcaaagcg cctgaagggg atcagactga acggattgga      1080
     catacagtgc cttgtagaca caggagcgga cgtatcaatt gtttgctact cagcgtttaa      1140
     aaagatgctc gacgtaaagg tggaaaaaag ttatgccgcg ctgcgaggtc taggaaacat      1200
     tcagacaaag ccgctgggta ccttcatcgg cancgtagac gtcgatggac tggttgttga      1260
     gcaaaaattt nttgtagttc cggataacca tatcgaagnc gaagctctgc taggttttga      1320
     cttcgcatcc aagtttcggg tcatcttaga tgaaaatgga ttcacactca ccaaggtgtc      1380
     agcgcagcca gagagcgctg gaggagagga gctaagtatc tataacnttg ttgaggtcga      1440
     ggataacatt aacgtctccc cacagtttaa gccgctcatc caatcgatgg tcgacaagta      1500
     caagccgatt gaacccccag ttgagtgtcc tgttgaatta aagatagtac ctgatgagca      1560
     gataaagcct ttccgtcacc aaccgagtgg atactcacca gtagaggnag acgccgtaag      1620
     acagcaagtg gaaaaatggc tcgcggaggg cgtaatncgg aagtctacgc cnaacttcgc      1680
     aagtcgagtg gtcgtcgtaa ggaagaagga tggcacaaac agaatttgcg ttgatttccg      1740
     tcagataagc aggatggtac tcagagacag cttccctgtt ccactaatgg atgatgtttt      1800
     agaaaaactg caaacagcaa aggtgttcac agtcatggat ctggaaaata gtttcttaca      1860
     tgtaccgatt gaagagtcca gtcgccgcta cactgcattc ataacaaaag agggcctctt      1920
     tgaattttgc aaagctccat tcggattttg caattcaccc gcagtgttta accgttttgt      1980
     caactgtgtt ttccaagatc taattcaaga tgacttaatg cagatctacg ttgatgatat      2040
     aattatcttt gcacaaacgg atgaggaatg cataatgaag ttggaaaaag tactacagga      2100
     ggccgcaaaa tatggactag aaatcaagtg gaaaatatgc catttcttag agaaaaggat      2160
     cagtttcttg ggtcacacaa tcgaagacag caaaatatgg ccaggactgg aaaaaacact      2220
     agctgtgcag aagttcgctc gtcctaaaaa tgtcaaggat ttccaatcgt ttcttggagt      2280
     tacaggagtt tttcgtaaat ttgttcgagg ctatgcatta atagctaggc cgctgacaaa      2340
     tcttttgaga aaggatgtcg aatttaaatt tgaagcagct gagataaacg ccatgaaaga      2400
     gttgaaagat atcttatcaa cagaactgta cattgatgct tcaatgaacg gtttcgtcgg      2460
     catactgatg cagagattcg acggtgaact tcatccggtg gcattttgga gtaaaaagac      2520
     ttcatgcgct gacgcaaaac gccacagtta tatccttgaa gtaaaggcag cttacctagc      2580
     tgtcaagaag tttcgccact accttctggg aattgaattc aaattggtaa ccgactgtgc      2640
     agcgttttcc cagactgtga aaaggagaga tgtaccaagg gaagtcgcag attggattct      2700
     aaacctcgag gacttcacat tccatgttga gcatcgcgcc ggggagaaaa tgaaacacgt      2760
     agacagtctc agtcgtcacc cagttgatgt ttttacggta acatcagaag tctctgttca      2820
     agtaaagatg gcccaacaaa aggacaatta tatctctgtc attctcatac ttaagtcgca      2880
     gctctacaaa gactttcaac taaatggagg aatcctgttc aaagtggtgg atggaaatga      2940
     tgttatggtt gtacctaagt caatggagta cgaagttata aaggaagcca acgacgtcgg      3000
     tcatttcgca ctgcagaaaa ctatgcatgc cttgcaacag cagttctgga ttccgcatat      3060
     ggagaaaaaa gtggcccaga ttatcaacaa ttgtgtcaaa cgcattctta taaacaaaaa      3120
     agttggaaag caaaaaggtc ttctgtattg cattgagaaa ggagataaac cactgcacac      3180
     tcttcatgtg gatcaccttg gaccaatgga tgcgacatct aagcaatatc ggttcgtttt      3240
     tgcagccgtg gatcctttta ccaaatttgt tttgttattc ccaaccaaaa tcaccggaag      3300
     ttggaggaat ggtcggtagt atttggtcac ccagtacgga tcgtaagcga cagaggagtc      3360
     gcgtttacat cgaatcaatt tcaggagtac gtcgcaggaa atggcattga acatgtttgg      3420
     actactacag gagttgctag aggaaatggc caaattgaac gcgtaaacag gataataatt      3480
     tcgatggtcg ctaaattgtc tgcagaagat ccttctaaat ggtataaggt tgtagctaca      3540
     gtacaaaaag ccataaactc gcacgtccac tgctccacga agaagacgcc gtttcaactg      3600
     ctgtttggtg tacaaatgca taacaaagtt tgcgatagtg tgttggctgt actggaacaa      3660
     gaaatgatca atgattttga tatggaaggg aaccaattac gtcaggaggc gaaaattcaa      3720
     attcaagaag cccaagagaa gtacaaaaga aattacgaca agaaacgagt tatggaaaaa      3780
     gtttataaag aaggagatct agtggccata aagaggacac aatttgttgc tgggaaaaag      3840
     cttgctagct ctttccttgg tccttacaca gtaaccaatg tgaagagaaa tggacgatat      3900
     gacgtcaaaa aactgcacta gttgaaggac ctgctgctac atcgactagt tcggataata      3960
     tgaagctatg gaagtacgta gtcgaaaatg aggatggacc atcgtctggg tcagactcgg      4020
     agtatcagga tggccgaa                                                    4038
//
ID   Gypsy-17_DTa-LTR repbase;    DNA;    INV; 414 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DTa_;
KW   Gypsy-17_DTa-I; Gypsy-17_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-414
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1629-1629 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 414 BP; 122 A; 88 C; 101 G; 101 T; 2 other;
     tgtaaaacat agttcacgat atcaatagct gtcatcggcc aggtcagctg tgcttcggta        60
     tcgacggtgt ggccagatcg gacggagata agaaagactg gggcaagaaa agtggaagga       120
     acacacagag ggtgtggact accggaggga tcacatcggg agaatattgc taagaggaaa       180
     ttaaagtcgt cgccgtggaa tcaagtccga gtacaagaag ttggtacgcc ggagggtcca       240
     tcgcaaatcc agttgaattc aagtcgtcaa gagtcattac attccgttgc cctaagtncc       300
     gtcgctctaa gttccgttct tcgaagtcgt ttcgtaacca actaccattg atttatcatt       360
     attccataca aatatcttat gtnctattaa ataaaccagg cccagtgcct taca             414
//
ID   Gypsy-17_DWil-I repbase;    DNA;    INV; 4717 BP.
XX
AC   scaffold_180762;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DWil_;
KW   Gypsy-17_DWil-LTR; Gypsy-17_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4717
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180762; Positions   44875   49591.
XX
CC   Positions [2185-2742] - Reverse transcriptase
CC   Positions [3754-4233] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..4680
FT                 /product="Gypsy-17_DWil-I_1p"
FT                 /translation="MDSINPDDFSKSQLQIWCKNLGLPDTGTKNVLAERLN
FT                 QLSPVARGQHPKDGAAPNGGLSKRADPPEKDCLEHLKSILYSSDDGAGQTQ
FT                 NFEADLFQGQQQQEVTANEQNKAENGQNEAENDQNDAESETQTENESITNE
FT                 PQEISKATNEKSNEKSNNGERNATNEKSNEKSNNGERNGTNEKSNEESQKE
FT                 ENIVKYTLEKKLELLCKEIELVRRENEFLRLAGNPESGHSSSWLATKTGDQ
FT                 VLAKDVKDFVLDFDGNGNVYSWISSMLHLERSFNLNENNLRLLVFGKLKGK
FT                 ALDWIHSNPECLCQPVKTIFDAMGKVFGSKKTNVIIRREFEARKWCVGEPF
FT                 LNYFNDKVGLAGGLRLPEDEMVEYIVDGIPDRHLREMACMQRFGSKDDVLA
FT                 AFVNIVLQREKPVSLPNVSAKKKPTFRCFNCNCLGHLAADCNKPIRATGAC
FT                 FGCGEMGHRVADCSQNKKKPAAISVSLDNIRIVKVHIGNDVFSLGCLIDSG
FT                 SAVSLIKKEFVSDEIKLEPGPEHTYFGLNKSKLEVFGSILCYVEILNKNVY
FT                 VRLLIVSNESMGSPILLGRDFMKICKAKIVLQLDDDLCKESMAESIKLSHD
FT                 LSKEDNFENQMLNIDCDVVNSKYSVGKSLSFNETTMFENIFSKFYLERNRP
FT                 NEPKVKCEMKLTINDISPFSCNPRRLSYSEKAELQKIIDEYLSKEYIRPSE
FT                 SEYVSPIVLVKKTTGELRMCVDFRKLNKATSKDSYPIPLIDDLLDRLAGKT
FT                 LFSKLDLKNGFFHVYMHEDSVKFTSFTTPLGQFEFLRMPFGLRNAPSTFQR
FT                 FINRIFADMIRDEKVIIYLDDIMVATKDFDTHLEILKEVFDRLVDNKLELR
FT                 LDKCEFLQTSVKYLGYSITGKGIKADDKGIQAVKDFPVPTKVSEVQSFLGL
FT                 CSYFRRFIKDFATIAKPLYDLVRKDKKFMFGNIELSTFENLKSKLTEAPIL
FT                 ALYSPNDETELHCDASSIGFGSILLQRKSDGKWHPVFYFSKRTTDVESRYH
FT                 SFELETLAIIYSLKRFRVYLQGKHFKIATDCNSLTLTLSKREVNPRIARWA
FT                 LELENYDYVLEHRPATRMQHVDALSRNTNIMVVETNSFEDNLVICQNQDDE
FT                 ILRLKSMLERSEHSSYEMRNGLIYKKLQNGCLAFYVPKNMESHVLFKYHNE
FT                 LGHTGIDKVVEVITKSYWFPKLRKKVEQHVNNCLKCIVFSSKNGKQEGHIH
FT                 NIPKPDVPFEVVHIDHFGPIDVKGSTKKHVLVVVDACTKFVRLYLAKTTKS
FT                 KEAIEALKEYFRSYSRPKCIVSDRGTCFTSNEFSSFLESCNIQHVKIATGS
FT                 PQANGQVERINRSLGPMLAKLLASEENVSFGQAIEIVEYTMNNTIHRSLGQ
FT                 HPSVVLFGVGQKGRQVDELKDYLLEDRSVERNLESVRAKAKEKEKKLQEYN
FT                 ECLANRKRRGPKVFKPGDYVVVKNFDTHKGVSKKLVPRFKGPFKIVKCLEN
FT                 DRYVISDVDGFQQSKIPYTGIWSITNMKPWFNWSVNVNENSIKEKVSMLSK
FT                 GRHKED"
XX
SQ   Sequence 4717 BP; 1657 A; 769 C; 1036 G; 1255 T; 0 other;
     gagatagacg tgttttactc gctataattt cagaagtggt catagttaac ccagtgaaaa        60
     aacagtgaaa tagctataat ttagcaaaga aaaaatatat attaaaaaac aataatggat       120
     tcaataaatc ctgacgattt ttcgaagtcc cagttacaaa tctggtgcaa aaacctaggt       180
     ttaccagata ctggcactaa aaatgtgcta gccgaacgtt taaaccaact tagccctgta       240
     gcgagagggc aacatccaaa agatggagct gctcctaacg gaggcctaag taaacgcgcg       300
     gatccccctg aaaaagattg cttggagcac ctaaagagca ttttgtattc atcggacgat       360
     ggcgccggtc agacgcaaaa tttcgaggca gacttgttcc aaggtcaaca gcagcaagaa       420
     gtaacggcaa acgaacagaa caaagcagaa aatggacaga acgaagcaga aaatgatcaa       480
     aacgatgcag aaagcgagac gcagacagaa aacgagagca ttacgaatga accgcaagaa       540
     atatcaaaag caacaaatga gaagtcaaat gaaaagagca acaacggaga gcgcaacgca       600
     acaaatgaga agtcaaatga aaagagtaac aacggagagc gcaatggaac aaatgagaag       660
     tcgaatgaag agagccaaaa agaagaaaac atagtaaagt acactttgga aaaaaagctg       720
     gaactacttt gcaaagaaat cgaactggtt cgtagagaga acgagttttt gcgccttgct       780
     ggcaaccctg agtctggcca ctcaagcagc tggctggcga cgaagacagg tgaccaggtc       840
     ttggccaaag atgtgaaaga ttttgtactc gattttgacg gtaatggaaa tgtttatagt       900
     tggatatctt ccatgcttca tttggaaaga tcattcaact tgaacgaaaa taatttacgt       960
     ttgcttgtct tcggtaaact aaagggcaaa gctttggatt ggatacactc aaaccctgag      1020
     tgtttgtgtc agcctgtgaa aaccatattc gatgccatgg gaaaagtctt cggatcaaag      1080
     aagaccaatg taataattcg aagagagttt gaggcacgca agtggtgcgt cggcgaaccg      1140
     ttcctgaatt actttaacga caaagttggc ttggctggcg gcttgcgttt gccggaggac      1200
     gagatggtcg agtatattgt tgacggaata ccagaccgtc acttgcgaga gatggcttgt      1260
     atgcagcgtt ttgggtctaa ggatgacgtg ttggcagcat ttgtcaacat agtgctgcag      1320
     cgggaaaaac ctgtatctct gccaaatgtt tccgcaaaga agaagcccac attcaggtgc      1380
     ttcaactgta actgcctggg tcacctagca gccgactgta acaaaccaat aagagcaact      1440
     ggtgcttgct ttggatgtgg tgaaatgggt caccgagtgg cagattgcag tcaaaataag      1500
     aagaagcccg cagcaatatc agtaagtttg gataatataa gaattgtaaa agttcacata      1560
     ggtaatgatg tattttccct aggatgcctc atagactcgg gaagcgcagt tagcttaatt      1620
     aaaaaggagt tcgtttcaga tgaaattaaa ttggaacccg gtcctgaaca tacatatttt      1680
     ggtttaaata aaagtaaact tgaagtcttt ggaagtattt tatgttacgt tgaaatatta      1740
     aataaaaatg tttacgttcg actactgatt gtttccaacg agtctatggg aagtccaata      1800
     ctgttaggta gagattttat gaaaatatgt aaagctaaaa ttgtactgca gcttgacgat      1860
     gatctgtgta aagagtcaat ggccgaaagt attaagttaa gccatgactt gagcaaagaa      1920
     gataattttg aaaaccaaat gctaaatatt gattgtgacg tggtaaattc aaaatattct      1980
     gttggcaaaa gtttaagttt caatgaaacg acaatgtttg aaaatatttt ttctaaattt      2040
     tatctggaaa gaaatcgacc aaatgaacca aaggttaaat gcgaaatgaa actcacaatc      2100
     aatgacataa gtccgtttag ctgtaatcca agacgacttt cttatagcga aaaggctgaa      2160
     ttgcaaaaaa taattgacga atacttaagc aaagaatata ttaggccgag tgagtcagaa      2220
     tatgtttccc caatcgtgct cgtaaaaaag actacaggtg aacttagaat gtgcgttgat      2280
     tttagaaaat taaacaaggc gacttcaaaa gatagttatc ctattccact tattgatgat      2340
     ctgttagata gacttgcagg aaaaacctta ttttcgaaac tcgacttaaa gaatgggttt      2400
     ttccatgtat acatgcatga ggattcagtg aagtttacgt cattcacgac accgcttggt      2460
     cagtttgaat ttcttcgtat gccatttggc ctcagaaatg cgccgtctac atttcaaagg      2520
     tttataaaca ggatatttgc cgatatgatc agggatgaaa aagttattat atatttagac      2580
     gatattatgg tagcaacaaa agattttgat acgcatctag aaattttaaa agaagtattt      2640
     gaccgattgg ttgacaataa attggagttg agattagata agtgcgaatt tctgcagacg      2700
     agtgttaagt acctagggta ttcgattaca ggcaaaggca tcaaagctga cgataagggt      2760
     atacaagcag taaaggattt tccagttccg actaaagtca gcgaggttca aagtttttta      2820
     ggactatgtt cctattttcg taggtttatt aaagattttg ctactattgc caagccatta      2880
     tatgacctag ttagaaaaga caaaaagttc atgtttggga acatcgaact tagtacgttt      2940
     gaaaatctaa agtctaagtt aacagaggcc ccaatacttg cgctttatag cccaaatgat      3000
     gaaaccgaac tgcattgtga cgcaagttct attggtttcg gatcgatttt gctacaaagg      3060
     aaaagcgatg gtaaatggca tccagttttc tatttttcta aaagaactac cgatgtggaa      3120
     tctagatatc atagctttga gttagaaaca ttggcgataa tttattcgtt aaaacgattt      3180
     cgtgtatatt tgcagggaaa gcatttcaag atcgcgacag attgtaactc gcttacattg      3240
     acacttagca aaagagaagt taaccccaga atagcccgtt gggctctaga gttagaaaac      3300
     tacgattatg tgctagagca taggccggca acgagaatgc aacatgtaga tgctttaagt      3360
     agaaatacta acattatggt tgtggaaact aactcatttg aagataactt agtaatatgt      3420
     cagaaccaag atgatgaaat tttaagatta aagtcaatgt tagaaaggtc tgaacacagt      3480
     tcgtatgaaa tgcgaaacgg tttaatttat aaaaaactac aaaatggttg ccttgctttt      3540
     tacgtaccga aaaatatgga gtcacatgtc ctgtttaaat atcataatga gttaggccac      3600
     acaggcatag acaaagttgt agaagttatc acaaagtcgt attggtttcc aaagttacgg      3660
     aaaaaagtag aacaacatgt aaataattgc ctaaagtgta tagtcttttc gtcaaaaaat      3720
     ggaaaacaag agggtcatat ccacaatata cctaaacctg atgtgccatt cgaagtggtt      3780
     catatcgatc acttcggacc aatcgatgtc aaaggaagca caaagaaaca cgtgttagtg      3840
     gtggttgacg cgtgtacgaa atttgtcaga ctttacttag cgaaaaccac aaaatctaag      3900
     gaagcaatag aagcacttaa agagtatttt agatcctata gtaggccaaa gtgcatagtg      3960
     tcggatcgtg gaacgtgttt tacgtctaac gaattttcta gctttttaga gtcttgtaat      4020
     atacaacatg tcaaaattgc aactggttct ccgcaagcta atggccaggt tgaaagaata      4080
     aatagaagtc taggccctat gttggcaaaa ttattagcct cagaagaaaa tgttagtttt      4140
     ggtcaggcca tagagatagt agagtatacc atgaataaca ctattcatag gtcattggga      4200
     cagcatccaa gtgtcgtact atttggcgtc ggccaaaaag gacgacaagt agatgaatta      4260
     aaagactact tgttagaaga caggtctgtg gaaagaaatt tggagtcggt acgagcgaaa      4320
     gctaaagaaa aagaaaagaa acttcaagag tataatgaat gtctagcgaa tcgaaaaaga      4380
     cgagggccaa aagtttttaa gccaggcgac tatgtggtag ttaaaaattt tgacactcac      4440
     aaaggggtgt ccaaaaaatt agtgccgaga ttcaaagggc cttttaaaat cgttaagtgc      4500
     ctcgaaaatg atcgatacgt tataagtgac gtcgacggat ttcagcagtc gaagattcct      4560
     tatactggaa tttggtctat cacaaatatg aagccatggt tcaattggtc agtaaatgta      4620
     aatgaaaatt ctattaaaga aaaagtcagt atgttaagca aaggtcgtca taaagaagac      4680
     taggatcagg tgatccttaa tgtcagaatg gccgaat                               4717
//
ID   Gypsy-17_DWil-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   scaffold_180762;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_DWil_;
KW   Gypsy-17_DWil-I; Gypsy-17_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180762; Positions   44657   44874.
XX
SQ   Sequence 218 BP; 74 A; 32 C; 38 G; 74 T; 0 other;
     tgtagcaata tgtattaata ttaagtatat cttactcttt cccccagtgc aatatgttta        60
     gaattaagta tatcttactc ttttctttgt tacaaattag tattaagttt tatgcaatgg       120
     tacagtacga gaagcgtgct gtctcacttt aaagaaaaga acaaagaggt tcaaataaaa       180
     agaatgagag cggctcagtt tttatggaga gctcacca                               218
//
ID   Gypsy-17_HeAr-I repbase;    DNA;    INV; 4527 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4527
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5565-5565 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..4188
FT                 /product="Gypsy-17_HeAr-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MMPRNRSKSQSYDDEDGGVLDRPARATFNYAEDVIRK
FT                 FDGRDRAYPVTKWIQDIDDNGDIFEWSQTQRLLVARRSLTGTAALWLSSEK
FT                 TFKCWESLKLAISKEFPDAIDAKTIHEMMSARKKRPNESCIDYMFAMKELG
FT                 KRGKMADYVAIKYIIDGIRDNEINKIMLYGITTYSELKEKLKIYEMIKEKT
FT                 RYTEKGKDSSNIRKEEVSSYRYRCYDCGEKNHRSENCPHRNLGKKCFRCNG
FT                 FGHISPNCPVNSKSSSPAAPVTSSGSGTSAETLRTQSKRTFVATALGSAEI
FT                 DDRDYEVGNTALAAIGRQHDMADGKCHGGDVDVLDVNKPGIFTKPVKSVKM
FT                 LCGNITDALVDSGSDVNLIRLDFYKEIGSPACDSECVITLTGLGLSKIKPI
FT                 GQFRTSIEIDGYTYRDVIFYVIPNETIPFKVLIGHEFLQNVITVMKGGSVW
FT                 MKPNDWLRDVDCCACSVDVVGHVMDQNVREEVARLVESYKPQQTKEAPIEL
FT                 KIILKDDIPVAQRPRRIAPREQAEVDKQIREWLDQGIIRVSFSEYASPLVL
FT                 VRKKDGSLRVCVDYRLINKKMVKDEYPLPIIDEHIDKLAAARVFSALDLKN
FT                 GFFHLRVSEESIKYTSFVTMTAQYEFLRAPFGLSICPKVFTRFISIIFRDL
FT                 ITRGVVVIFIDDLLIPALTEAQAVERLQEVLQVAMEYGLEINWSKSQLLVR
FT                 KVEYLGHVIEGGAVTPSPGKTEAVLKFPEPRNEKQLLSFLGLCSYFRKYIQ
FT                 NFATIAKPLTDLLRKDRKFEFHDEHRLAFNTLKNKLASKPVLKIYDSKAPT
FT                 ELHTDASCVAYAAILLQKDVKGDLHPVYYMSKRTTDAESRYTSYELEALAI
FT                 IEGIKKFRHYLYGNHFKIVTDCKAFQMTLNKKDLATSPRVARWILFLQDYD
FT                 FTIEHREGSRMKHTDALSRNPYIATIFSDLHSSLRRAQETDTGLKAIKNIL
FT                 EEGKPYNDFYLHDGLLCRGKERCLVIPQRMEVEIIKRAHDNGHFSKKKTIE
FT                 LISKDYFITHLDKKVEEYIANCIPCLLASRKEGKQEGYLNPIEKGDTPLHT
FT                 LHIDHIGPLTETRKQYNYILTVVDGFTKFVWLFPTKSTTTQEVLRKLEIHQ
FT                 QVFGNPARIISDRGTAFTSNDFAEYCKQEGIEHVKITTGVPRGNGQVERVH
FT                 RTIIGVLTKLSVEQPTLWYKLVSRVQRALNSTYHRSINNTPFQLLLGTKMR
FT                 RKEDVEILDLLKQEERESFIEDREELRKSAKQQILKIQEENRRNYNKKRKP
FT                 SRKYEEGGLVAVKRTQFGTGLKLKPKFLGPYKVVKVKRNDRYDVEKADSRA
FT                 EGPHRTTASADHMKPWPDYMSDTE"
XX
SQ   Sequence 4527 BP; 1491 A; 787 C; 1097 G; 1152 T; 0 other;
     aattgtgggg gctcgtccgg gatacgcaaa atcggcgagc ggcggcgtgc aggagcacgt        60
     gtccgacgtt ggagaagaag acccgttaca ggatagcgcg agcgcggcag cggcggagcg       120
     cctgcggcgt tgaacgtgga aagtataata cgtagccagg agtacgattt tacgacgttt       180
     atgatgccaa gaaaccgaag taagagtcaa tcgtatgacg acgaagatgg cggcgtactc       240
     gatcggccag cgcgtgctac atttaattac gcggaagatg ttataaggaa gttcgacggc       300
     agggacaggg catatcctgt aacaaagtgg attcaagata tagacgacaa tggtgatatc       360
     tttgaatggt cgcagacaca aagattgctg gtggcgcggc gttcattgac tggaacggct       420
     gcgttatggc tgagctcaga aaaaactttc aagtgctggg aatcgctcaa gctagctatc       480
     tccaaagaat ttccagacgc gatcgacgca aaaactatcc atgagatgat gagtgctaga       540
     aagaagaggc cgaatgagtc atgcatcgat tatatgttcg ccatgaagga gcttgggaaa       600
     agagggaaaa tggcggacta cgtagccatt aaatacatca ttgatggtat acgggacaac       660
     gaaatcaata aaataatgtt gtacggcatt accacatact cagagttgaa agagaagctt       720
     aaaatatatg agatgatcaa ggagaagacc cgttataccg aaaaaggaaa agatagtagt       780
     aatattcgca aggaagaagt ttcatcatac agatacaggt gctacgactg tggggagaaa       840
     aatcatcgga gtgaaaattg tccgcacaga aatctaggga aaaagtgttt ccgatgcaat       900
     gggtttggac atatttcccc aaattgccct gtgaactcaa aatcatcatc accggctgca       960
     ccggtcacat cttccggttc cggtaccagt gcggaaacat tacgaacaca gtcgaagcgg      1020
     acattcgtcg caacagctct aggcagtgca gagatcgacg atcgagatta tgaggttggc      1080
     aacactgccc ttgcggcgat tggccgacaa catgacatgg cggacggaaa gtgtcatggc      1140
     ggcgatgttg acgttttgga tgtaaacaaa cctggaattt ttacaaaacc agtgaaaagt      1200
     gtaaaaatgc tgtgcgggaa tataacagat gcgttagtcg attcggggag cgatgtaaat      1260
     ttaataagat tggacttcta caaagaaata gggtctcccg cgtgtgatag tgagtgtgta      1320
     ataactctta ccggcttagg actttctaaa atcaaaccaa ttggacaatt ccggacaagt      1380
     attgagatcg atggatacac gtaccgtgat gttatattct atgttatacc caatgaaact      1440
     attccattca aagtgttaat tggtcacgaa tttctacaaa atgtcattac ggttatgaaa      1500
     ggcggatctg tatggatgaa acctaatgat tggttgcgtg atgtggattg ttgtgcgtgt      1560
     tctgttgatg ttgtaggtca tgtgatggac cagaacgtga gagaagaagt agccaggtta      1620
     gtagaatctt acaagccaca gcaaactaag gaggcgccta tcgagttaaa gatcatactg      1680
     aaggatgaca tacctgtcgc tcaacgtcct cggcgcatcg caccccgaga gcaggcagag      1740
     gtagacaagc agattagaga atggttggac cagggaataa ttcgggtaag tttttccgaa      1800
     tatgcaagcc cgcttgtctt agtaagaaag aaagatggta gtttgcgagt atgtgttgac      1860
     tataggttga ttaacaagaa gatggttaaa gatgaatacc cgctacccat catagatgaa      1920
     catattgata agctggctgc tgcgagggtg tttagcgccc tagaccttaa gaatggattt      1980
     ttccacctga gagttagcga ggaatctata aagtatacct cctttgttac tatgacggct      2040
     cagtatgaat ttttaagagc tccgtttggc ctatccatat gtcccaaggt tttcacccgt      2100
     tttatctcaa taatattcag ggatctgatt actagaggtg ttgttgtaat attcatagac      2160
     gatttgttaa ttccagcatt aacagaggca caagctgtcg agaggttgca agaggtgttg      2220
     caagttgcta tggagtatgg actagaaata aactggtcaa agtcacagct gctggtgcgg      2280
     aaagtggagt accttggcca tgtaatcgaa ggtggagcag ttacgccatc gccaggaaag      2340
     accgaggcgg tcctaaaatt tcctgagccc agaaatgaga agcaactgct cagtttcttg      2400
     ggactttgtt catattttag aaagtatatt caaaactttg ctactatagc caaacctctc      2460
     acagatttgt taagaaaaga cagaaaattt gagtttcatg atgaacatag attggcattc      2520
     aacactctga agaataaatt ggcaagtaaa cctgttttaa aaatttatga ttcaaaagca      2580
     cccactgagc tgcatactga tgcatcttgt gtggcatatg cggctatact actacagaaa      2640
     gacgttaaag gtgatctcca tcctgtatat tatatgagca agcgaactac tgatgctgaa      2700
     agcagataca caagctatga gttagaagcc ttggctatca tcgaaggaat aaaaaagttc      2760
     agacactacc tttatggaaa ccattttaaa atagttactg actgcaaggc atttcagatg      2820
     acattaaata aaaaggattt ggcaacatca cccagggtag caagatggat tttatttctg      2880
     caagattatg attttactat tgagcatcgt gagggatcaa gaatgaaaca tacagatgca      2940
     ctgagccgaa acccatatat tgcaaccata ttttcagact tgcatagttc attgagacgt      3000
     gcacaagaga ctgacactgg actgaaggcc attaagaata tactggaaga aggaaaacca      3060
     tataatgatt tttatttgca tgatggattg ttatgtagag gaaaggaaag atgcttggtt      3120
     ataccacaaa ggatggaggt ggaaataatc aagagagcac atgataatgg tcatttctca      3180
     aagaaaaaaa ctattgaatt gataagtaag gactatttca taactcacct ggataagaaa      3240
     gttgaagagt atatagctaa ctgtatccca tgtctccttg cttcacgaaa agaaggtaaa      3300
     caagaaggat atttgaaccc catagaaaaa ggtgatacac ccctacatac tctgcacatt      3360
     gaccatatag gaccacttac cgaaactcgc aaacaatata attacatact cacagttgtt      3420
     gatggattca ctaagtttgt gtggctgttt cccacaaaga gtacaaccac tcaagaagta      3480
     ttgaggaagc tggaaataca tcaacaggtg tttggtaatc ctgcaaggat tatctctgac      3540
     aggggtactg cctttacgag caatgatttc gctgagtatt gtaagcaaga gggaatagag      3600
     catgttaaaa taaccaccgg agttccaaga gggaatggtc aagtggagag ggtgcatcgg      3660
     acaatcatcg gggtcttgac aaaattatca gtggaacaac ctacgttgtg gtataagttg      3720
     gtgagtaggg tgcaaagagc actcaacagc acatatcaca gaagtatcaa taatacacct      3780
     ttccaattgc ttcttggaac gaagatgaga aggaaggaag atgttgaaat attagattta      3840
     ttaaaacaag aagaaaggga aagtttcatt gaggataggg aagaattaag aaagagtgcc      3900
     aagcaacaga ttctaaagat tcaagaggaa aacagaagaa attacaacaa gaagagaaag      3960
     ccaagcagaa agtatgaaga aggtggactt gttgctgtga agagaactca atttggaaca      4020
     ggccttaaac tcaagccaaa gtttttggga ccttacaagg tggtgaaggt aaagagaaat      4080
     gataggtatg atgtagagaa ggctgactca cgagcggagg gtcctcacag aactacagca      4140
     tcagcagacc atatgaaacc atggcctgac tatatgagtg acacagagtg aaatataagg      4200
     gcattactta cctttgattt gatagtatgg aaggatgaat gacctataac cgtaatgttc      4260
     tgttaccagt gtatgtactt agtatactta ccattcatgt ttgattgttg taaacaacct      4320
     tgtacctagt gtggtgtaaa caatattgtt agaaatgtat tgctgttata attgtaacca      4380
     ttggcactgt ctcatgtctc agtagttatc ataaggctta aactatgttc aagcagtagt      4440
     taaaagattt aaagtatgta actgtaacct ttaagattta ttttcatgtg cttagtctga      4500
     ggacagacta agagcaggac ggccgga                                          4527
//
ID   Gypsy-17_HeAr-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-279
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5595-5595 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 279 BP; 88 A; 34 C; 72 G; 85 T; 0 other;
     tgtgggaatg tatccgaata tctgattgat tgagtgaaag tgttttagat gtgtatccga        60
     acgatgagag tgagatgatg aacgagaggg catgaaaggg aacgaacgag agagtacttt       120
     gcgtgcatta tgctttacga tggttttacg acgacacgat tgattgaaga cgatgttaat       180
     taagattaag aatagtttta aaggattttg attgttgtaa aagctgctaa ataaacgata       240
     agaagatttc cgagccgttt cgctgttttt acccctaca                              279
//
ID   Gypsy-17_LH-I repbase;    DNA;    INV; 4551 BP.
XX
AC   ADOQ01011331;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_LH_;
KW   Gypsy-17_LH-LTR; Gypsy-17_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4551
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011331; Positions    7892    3342.
XX
CC   Positions [2053-2595] - Reverse transcriptase
CC   Positions [3631-4107] - Integrase core
CC   'GTTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..4452
FT                 /product="Gypsy-17_LH-I_1p"
FT                 /translation="MSDPNVFSVLQLKKLLKARGLSATGAKTELIARLIEA
FT                 DPSGEWMRGSDDDDDRDDDCAGGDVCREDRMDRRELEICRREKEIAERELE
FT                 LARREIALLREGQDANRACRRETLANNGNDDGAIIPSHSRINLTTVADLLA
FT                 NFDGSPSNFDTWERMAKFLKMTYRLEDDQAKILVGMRLKGKALEWLHSKPE
FT                 LINTSFDILIEKLRAMFGQRQNRMMIRRAFEARGWRRDETFREYVHKKVIM
FT                 GNRVPIENDDIIDYIIEGIPEVALRNQARLQRFDEVESLLGAFETISLRDY
FT                 HTSSNRPDRRGSGRASSERDGRTSQSERKNDNTNGSERRKTVTDVKRCFNC
FT                 GVRDHISANCPSKDRGTKCFKCGEFGHIASKCSERNDAPSSYLVASPSHRK
FT                 YTKDVAINGKKIEALIDTGSDISLMRADEYIKLGLPRLRSTGMRFLGVGSG
FT                 EMITLGECWAELTVDGHSYPVLIRVVSDMVLQQKLLVGTDFLNTVEVHIKQ
FT                 GVITISPTYTQIANADGSPDIFRIDICETNAVDAFQVQNADHRRAVATIID
FT                 EYRPNKVLETDIKMTIILKDDEPVYQRARRLSPSERSIVNSQIEEWERQGI
FT                 VRPSFSDYASPIVLVRKRDDSHRLCVDYRLLNKKIIKDRYPLPLIEDTLDR
FT                 LQGAKVFSTIDLKNGFFHVRMDEASIRYTAFIVPDGQYEFLRVPFGLCNSP
FT                 SVFQRYINAIFRNLIRDRVTLIYMDDLIVLSDDYESGLKNLKSVLDTAGRA
FT                 GLTINWNKCCFLRETVEFLGHTIGDGHVRPSERKIEAVKRFPEPKTVRQVQ
FT                 AFLGLAGYFRKFIPRYAEIARPLTNLLRASVEFCFREAERDAFVRLKVLLS
FT                 EQPVLSLYRVGAETELHTDASMHGYGAILLQRDGEDQLLHPTYYASGRTTP
FT                 AEEKYSSYELEVLAIIKALKRFRVYLLGIPFRIVTDCRAFALTMSKRDLCV
FT                 RVARWALLLEEFRYTIEHRPGKNMLHVDALSRNPLPSSLVIDECEDGLMAR
FT                 LKGAQAKDENIKRMLDALKQGQLSDYILRDGLLYKEVDDDIRLVVPKSMQA
FT                 QVIRRAHERGHFAANKTEASVKRDYWIPGLRSKVEAIVRNCVACILAERKQ
FT                 GKQEGMLNPIEKGSVPLDTFHTDHLGPLTSTKKSYIHIFVVVDAFSKFVWL
FT                 YATKSTSAAEVVDRLKKQSIVFGNPRRIISDRGSAFTSREFEEYCRQEGIE
FT                 HSLITVGVPRSNGQVERLNRTLIPLLAKLSAPRPGEWYKYLDTVQRCLNTT
FT                 LHRSIGMTPFHLLFGVHPRISDDPDVRSLLQNEQIASFQDDRDGLRMQARE
FT                 NIAKIQRENRKHYDKRRKKAFCYREGDLVAIKRTQQGPGLKLAPKYLGPYE
FT                 TVKALRNDRYLVRKIGEHEGPYQTSSAADS"
XX
SQ   Sequence 4551 BP; 1279 A; 887 C; 1290 G; 1095 T; 0 other;
     tattttgggg gctcagccgg gatcggagtg aaagcagttg ttctcaccag gaagacgaaa        60
     gatagttttg ccgtgtgtga gttgtgtgcg tgtgtggagc acgagacgtt gtcgaagttg       120
     tgaagaagtc gcgaagtgca ggagcgttta gacgagactc tgcttgcact agcgggaaga       180
     cgagattgtg tgcgtgtgac gagcgcgcga cgaccgcaca cgcgtattaa cggcaaatta       240
     ttagcgacga agtgtgtccc gcgacgaata gccatgtcgg atcctaacgt tttcagtgtg       300
     ctacaactga aaaaactttt gaaggctcgt ggattgtcgg ccacaggagc aaaaacggag       360
     ctcatcgctc gtttaatcga agcggatccg tcgggcgagt ggatgcgagg aagtgacgac       420
     gatgatgatc gcgatgacga ttgtgctggc ggagacgttt gtcgcgaaga tcgtatggat       480
     cgacgagagt tagagatctg caggcgcgag aaagaaattg ccgaacgcga attggaactt       540
     gctcgccgcg agatcgcttt attgcgagag ggtcaagatg cgaatcgtgc gtgtcggaga       600
     gagacacttg cgaacaacgg caacgacgat ggcgcgataa taccgtcgca ttcgcgaata       660
     aatctaacga cggttgcgga tctattggcg aattttgacg gcagccctag caatttcgac       720
     acgtgggaaa gaatggcgaa atttttaaag atgacgtatc gactggaaga cgatcaagcg       780
     aaaattttag tcgggatgag actgaaggga aaggctctcg aatggttgca ttcgaaaccc       840
     gagctcatca atacgagttt cgacatttta atcgagaaac taagggcgat gttcggtcag       900
     cgacaaaata gaatgatgat tcgaagagcg ttcgaggcgc gtggttggag gagggacgag       960
     acgtttcgcg agtacgtgca caaaaaagtg atcatgggta atcgtgtgcc gattgaaaat      1020
     gacgatataa tagactatat tatagaaggt attcccgaag ttgcattgcg taaccaggca      1080
     cgtttgcaac ggtttgacga agtggaatct ctgttaggag cattcgagac aatatcgtta      1140
     cgagattacc acacgagttc gaatcggccg gatagacggg gcagcgggcg ggcgtcgagc      1200
     gagcgagacg gcaggacgag tcagagcgag agaaaaaatg acaacaccaa cggcagcgag      1260
     agaaggaaaa cagtgaccga tgtcaaacga tgctttaact gcggtgtgcg cgatcatatt      1320
     agcgctaatt gtccgtcgaa agatcgaggc actaaatgct ttaaatgcgg agaattcgga      1380
     catatcgcat caaagtgttc ggaaaggaac gacgctccta gttcttacct ggtggcgtct      1440
     ccttcgcata ggaaatatac aaaagacgtt gcaataaacg gaaagaaaat cgaagcgctt      1500
     attgacacgg gtagcgatat ctccttgatg cgcgcagacg aatatattaa attaggttta      1560
     cctcgactgc ggtcgacggg aatgcgtttc ttaggcgtgg gatcaggcga aatgatcacg      1620
     ttgggcgagt gttgggcgga gctcacagtc gatgggcatt cgtatccggt tcttattaga      1680
     gtcgtttcgg atatggtttt gcagcagaag ttgctagtcg gcactgattt tctgaatacg      1740
     gtggaggtcc acattaaaca gggcgtaata acaatcagtc ctacctatac tcagatagcg      1800
     aatgcggatg gttcaccgga tatctttcga atcgacattt gcgaaacgaa tgcagtagat      1860
     gcgtttcaag tacaaaatgc cgatcacaga cgcgctgtcg cgacgataat tgacgaatac      1920
     agaccgaaca aagtactgga gaccgacata aaaatgacga ttattttaaa agatgacgaa      1980
     ccggtatatc agcgagcgag gcgtttatca ccgtcggaaa gaagcattgt aaatagccag      2040
     atcgaggagt gggagagaca gggaattgtc cgtccttcct tttccgatta cgccagtccg      2100
     attgttttgg tgagaaagag ggatgattcg catcgactgt gcgtagatta taggctatta      2160
     aataaaaaga taataaagga tcgctatccc ttacctttaa tagaagatac gctagacagg      2220
     ctacagggcg caaaagtttt cagcacgatt gatttgaaga atgggttttt ccatgtgcga      2280
     atggacgaag cgagtataag atacactgca tttattgtgc ctgacggcca atacgagttt      2340
     ttgcgtgtgc cgtttgggtt gtgcaattct ccttccgttt ttcagagata tattaatgct      2400
     atctttagaa acttaatacg agacagagta acattgattt atatggacga tctaattgtg      2460
     ctttctgatg actacgagag cggtttgaag aatttgaaga gtgtacttga cacagctggt      2520
     cgagccggtc taacgattaa ctggaataaa tgttgttttt tgagggaaac ggttgaattt      2580
     ctcggacaca cgataggtga cgggcatgtc cgaccatccg aacggaagat tgaggctgta      2640
     aagcgttttc ccgagcctaa aacggtgcga caggttcagg cgtttttggg tttggccggg      2700
     tatttccgca aatttattcc gagatatgcc gagatcgcgc gaccattgac caacctgctg      2760
     agagcgagcg ttgagttctg ttttagagaa gcggagaggg atgcgttcgt gcggttgaag      2820
     gtccttctga gtgagcagcc ggtgttgagc ttgtatcgag tgggcgccga aactgaattg      2880
     catacggatg cgtcaatgca tggctatggg gcgattcttt tacagcgaga cggtgaagat      2940
     caattgctac atccaactta ttacgcgagc ggcagaacga ctcccgcgga ggaaaaatat      3000
     tctagttacg aactagaagt cctcgctatt atcaaggcat tgaaacgatt ccgagtgtat      3060
     ttgctcggca taccgttcag gatcgtaact gattgtcgtg cgtttgctct cacgatgagc      3120
     aagagggatc tttgcgtgcg cgtggctcga tgggcattgt tgttagagga attccgttat      3180
     actatagagc atcggccggg taagaatatg ctccacgtgg acgctttgag tagaaatccg      3240
     cttccatcca gtttggttat cgatgaatgt gaggatggat tgatggctcg tctgaaaggg      3300
     gcacaagcca aagacgaaaa cataaagaga atgttggatg cattaaaaca aggacagtta      3360
     agtgattata tcctgcgaga cggactgttg tataaagaag tagatgacga tatacgactc      3420
     gttgttccta agtcgatgca agcacaggtg attcgaaggg cgcacgagcg gggacatttt      3480
     gcggcgaaca aaacagaggc gtcagtaaaa agggactatt ggattccggg attgcgatct      3540
     aaggtcgagg cgatcgtacg taattgtgtt gcgtgcattc tagccgaacg taagcagggc      3600
     aagcaggagg gtatgcttaa cccgatcgaa aaaggaagtg tgccactaga taccttccat      3660
     actgatcatt tgggcccgtt gacgtcgacg aaaaaaagtt atattcatat ttttgtcgta      3720
     gtagatgcct tttctaaatt cgtatggcta tacgcgacca agtcgacgag cgctgcagaa      3780
     gttgtggatc gtttgaaaaa acaatcaatt gtttttggaa atccgagaag aataatttcc      3840
     gatagaggtt ccgcattcac atcgagagaa tttgaagagt attgtcgaca ggagggcatc      3900
     gaacactcat taatcacggt cggagtaccg cggagtaacg gtcaggttga acgtttgaat      3960
     aggaccttga ttccattatt agcaaaatta tccgctccaa gaccgggcga gtggtataag      4020
     tatttggaca cagtgcagag atgtctaaac acgacgctac acagaagcat tggaatgaca      4080
     cctttccacc ttctatttgg tgttcatccg cgcatttctg acgatcccga tgtgagaagc      4140
     ctgttgcaga acgagcagat agcctcgttc caggatgacc gagacggatt gcggatgcaa      4200
     gcaagggaaa acatcgcgaa aattcagcgc gaaaatagga agcactacga taagcgaagg      4260
     aagaaagcat tctgttatcg cgagggcgat cttgtcgcaa ttaagcggac gcaacaaggt      4320
     ccaggtctca agttagcgcc taaatatctt ggaccgtacg agaccgttaa ggctttgcgc      4380
     aatgatcgat atctggtgcg taagatcggt gagcacgagg ggccatacca gacctcgtca      4440
     gctgcggatt catgaagcca tgggtggacg gcatcgacgg cgatctgccc agcgactctg      4500
     aagacgaagt gggtgaacat tcgaagtgaa tgttcagtca ggacggccgg a               4551
//
ID   Gypsy-17_LH-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   ADOQ01011331;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_LH_;
KW   Gypsy-17_LH-I; Gypsy-17_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-319
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011331; Positions    3341    3023.
XX
SQ   Sequence 319 BP; 90 A; 57 C; 68 G; 104 T; 0 other;
     tgtgggagaa taatatttcg cgcatcggac gtacgtcgat ccgggtcgcg ttagaggcga        60
     gtcgacgatt tatgttagtc cgactatgtg tgtattgtta atttatgtgt gtattattat       120
     tattcgacga ggtcagtaat gttttgaaga gcgatgcttc tgaccacgat gacgatctcg       180
     ttttaagaga gaacgtccgc gaccgttgac gagagaacaa ctctgatctt ccgcatctta       240
     tattctttct ttttacatta ataaaattac tggttttaca taaaataaat tggtcaataa       300
     ccaaccaaga aatcctaca                                                    319
//
ID   Gypsy-17_LMi-I repbase;    DNA;    INV; 4493 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4493
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(65..1639,1578..2429,2212..3531)
FT                 /product="Gypsy-17_LMi-I_1p"
FT                 /translation="MDTEAVIQALLEQQRAFTSAITTLSTTLSARVSAPST
FT                 FPPPFPQYDNSAEDWDAYEKWLRQHFLAFGVADANVCKALFLSWLSPRVYQ
FT                 LLGQLAPLRDPASLSFDEMCQLLSTYYHKHTHVVAARVEFYRCQKKPHQTY
FT                 HAWVAELQGLSRRCLFVTDAHKDSYADSMVRDAVIRLAPDKEVRQHALQCE
FT                 NPSLAEVLNIAQSFEISRAAGDQIEALCDVSAVDPTSPGPSFVDSHGAEDV
FT                 AAVNTSSQRRVGQRPAAQQQSRRATLRPRTILPSCPLCFVQHDRAACPKRR
FT                 ATCNKCRKKGHIAAVCRSQFSVDSDSTMDVNCVFPTASSTTKLFLELKVLG
FT                 QMLHLQVDTGAAVTLLNSQTYVDLGSPALSSVDRQLVNYNKQSIPVLGKFT
FT                 ASATYKNVVRSLTFLVVDDPHTANLFGMDAFQAFGFSITDSVHLVSEHVPY
FT                 QQIETLSSEFSSLFSEGLGCATNFTAHISLKSTARPRFFRARAVPFALRDQ
FT                 VKQELDRLTSLGALQAYSLQRVGVALSDCLLWVLCKPIPSSEWASPLVIVK
FT                 KPNGQLRLCGDFKNTVNAQSIIDTYPLPRPDELFAKLAGGQFFSKLDLSEA
FT                 YLQVPLDEVSKQFLVLNTPFGLYQYQRLPFGVASAPTIFQRFLEQLTVSVP
FT                 GCVNYQDDIVVTGATREEHLSNLRTLFTVLQTAGLKCNLSKSSFFQPSVVY
FT                 LGFELSKDGIRPLQHHVAAITAMPRPTDVKELQVFLGTIAYYHKFLPDAAT
FT                 VAHPLHALLRKTKKKGLSEVENPTHICSLFGHISSGPALGVGYRRFXDGIG
FT                 CRPLSQIARSPITINFFLMLPQWLILCMPYFEKQKKKAFQRLKTQLTSAPC
FT                 LVTYHPGQRLVLATDASQTGLGAVLSHKFDDGSERPIAFASKTLTATQQRY
FT                 SQIEKEALAIVYAVQKFHVFLYGSKFHLITDHKPLVALFNPSASLPDKAAH
FT                 RLQRWALFLSRYHYTIHFRPTDQHANADTLSRLPMGPDPSFDSSELLCYHL
FT                 DVEAQNTVDGFPIDASRIAATVARDPVLSKVVSLVQNGWPEKPPGKASDPL
FT                 RNYFALRYRLTVFQGVLLLATDGSSSRVIIPGALRQQVLRLLHQGHWGASR
FT                 TKNLARRHVFWPGIDSDIVHMVAACPLCAQHQAAPRSTLSPWPPSQRPWER
FT                 IHVDFAGPFFSSYWLIVVDAFSKFPYVARCAPQPRWPLFRLCPMCLLLKDF
FT                 PLQSCRQWPSVCLPILSGLLCSARHLPYPGSSLSSSIQW"
XX
SQ   Sequence 4493 BP; 899 A; 1268 C; 1070 G; 1255 T; 1 other;
     gtaattggcg acgagtttca cattccgcgc gtctctcgct cgctcatgtt ctccgtacgg        60
     gcttatggat accgaggctg tcattcaggc tcttctagag cagcagagag cttttacgtc       120
     tgcaatcacg acactttcca ccacgttgtc tgctagggta tctgcgccgt cgacgtttcc       180
     gcccccgttt cctcagtatg acaactcggc tgaagattgg gacgcatatg agaagtggct       240
     gcggcaacat tttcttgcgt ttggagtcgc ggatgctaac gtatgtaagg ccttgttttt       300
     gtcctggctt tctccccgtg tttatcaatt gctcggccag ttggcacctc tgcgggaccc       360
     ggcctctctt tcctttgatg agatgtgtca gttgttgtct acttattatc acaaacacac       420
     gcatgttgtc gcagcgcgtg ttgaattcta ccgctgtcag aaaaagcccc atcaaactta       480
     tcacgcttgg gtcgcggaac ttcagggttt gagtcggaga tgtttgttcg ttactgatgc       540
     tcacaaggat tcttatgctg attctatggt tcgtgatgct gtcattaggt tggctcctga       600
     caaagaggtt cgtcaacatg ctcttcaatg tgaaaaccca tcgctggctg aggtattgaa       660
     cattgctcag tcttttgaga tttcgcgagc agccggcgat caaattgagg ctttgtgtga       720
     tgtgtcggcg gttgatccta cttctccagg tccttccttt gttgattcac acggcgcgga       780
     ggatgtagca gcagtaaaca cttcttccca gcggcgcgta ggacagcgac cggctgcgca       840
     acaacagtca cggcgggcaa cactacggcc gcgcacaata cttccatcgt gccctttatg       900
     tttcgtccaa catgaccgtg cggcgtgtcc taaacgccgt gccacgtgca ataaatgcag       960
     gaagaaaggc cacattgcgg ctgtatgccg ctctcagttt tctgtcgact cagactctac      1020
     catggacgtt aattgtgttt tccctacggc ttccagcacg actaaattgt ttttagaact      1080
     taaagtattg ggacaaatgc tccacttaca ggtggatacc ggcgctgccg tgacactctt      1140
     aaattcccaa acctatgtag acctggggtc ccctgcactc tcttcagttg atcgacagtt      1200
     ggtcaattat aacaagcaga gcattccggt tctaggaaag ttcacggcgt cggcaacgta      1260
     taaaaatgtg gttcgttcct tgactttttt ggttgtagat gaccctcata ctgcaaattt      1320
     atttggcatg gatgcctttc aggcttttgg attttctata acggactccg tccacctcgt      1380
     ttctgaacat gttccttacc agcaaattga gactctatcc tctgaatttt cgtctctctt      1440
     ttcggaaggt ttaggttgtg ccaccaattt tacggcacac attagcctca agtctacggc      1500
     tcgccctcga ttttttcgcg cgcgtgctgt gccctttgcc ttgcgcgacc aagttaaaca      1560
     ggaattggac aggttgactt ctctgggtgc tctgcaagcc tattccctcc agcgagtggg      1620
     cgtcgccctt agtgattgtt aaaaagccta atggccagtt acgtctttgt ggcgatttta      1680
     agaacactgt taacgcccag agcatcattg acacataccc gttgccacgc ccagacgagc      1740
     tctttgcaaa acttgccgga ggtcagtttt tctccaaact cgacctatca gaggcgtact      1800
     tacaggttcc cttggacgag gtctccaaac aatttctggt actcaacaca cccttcgggt      1860
     tgtaccaata tcagcgtctt ccatttggag tggctagtgc tcccacgatt ttccaacgtt      1920
     ttttagaaca attaacagta tccgttccag ggtgtgttaa ttatcaagat gacattgtcg      1980
     tcacgggtgc caccagagag gagcatttgt caaatcttcg cacactgttc acagtccttc      2040
     agacagctgg cctcaaatgc aacctgtcta aatcaagctt cttccagcct tcagtcgtct      2100
     atcttggctt tgagctttct aaagatggca tccgtccctt gcaacatcat gttgctgcaa      2160
     tcacggctat gcctaggcct actgacgtta aggagctaca ggttttttta ggcacgatcg      2220
     cctattacca taaatttctt cctgatgctg ccacagtggc tcatcctctg catgccttac      2280
     ttcgaaaaac aaaaaaaaaa ggcctttcag aggttgaaaa cccaactcac atctgctcct      2340
     tgtttggtca catatcatcc gggccagcgc ttggtgttgg ctaccgacgc ttcmcagacg      2400
     ggattgggtg ccgtcctctc tcacaaattt gatgatggct ctgagcgtcc gattgcattt      2460
     gcttccaaga ccctcactgc tactcagcaa cgatactccc aaatcgagaa ggaggcactt      2520
     gccattgtct atgccgttca gaaatttcat gtgtttctat atgggtctaa gtttcacctc      2580
     attactgacc acaagccgtt ggttgcctta ttcaatcctt cagcttcctt gcctgataaa      2640
     gctgcccaca ggcttcagcg ctgggcactg tttctttcac ggtatcacta tacgatccac      2700
     tttcggccca ccgatcaaca cgccaatgcc gatactctct ctcggcttcc gatggggccg      2760
     gacccctcct ttgatagtag tgagttgctg tgttaccatt tggatgtaga ggctcagaac      2820
     accgtggacg ggtttcccat tgacgcttcc aggatcgctg cgactgtcgc tagggatcca      2880
     gtgctcagta aggtggtctc cttagttcag aatgggtggc cggaaaagcc tccgggcaag      2940
     gcttcggatc ccttgcgcaa ttactttgct ctgcgctacc gcctcactgt cttccagggt      3000
     gttttgctgt tggctaccga cggctcgtct tccagggtca tcattcctgg tgctcttaga      3060
     cagcaagtcc ttcggttgct tcatcaaggc cattggggtg cctctcgcac gaagaatttg      3120
     gcacgtcgcc acgtgttctg gcctggcatt gatagtgaca ttgttcacat ggttgcggca      3180
     tgcccgctgt gcgctcaaca tcaggcggct ccgcgctcta ctctctcacc atggccgccc      3240
     tcccagcgtc cctgggagcg cattcacgtt gattttgcgg gccccttttt ctcttcatac      3300
     tggctgatcg ttgttgacgc cttctcaaaa tttccttacg tggctcgttg tgctccacaa      3360
     cctcggtggc cactattcag gctctgtccc atgtgtttgc tattgaagga cttccctcta      3420
     caatcgtgtc gacaatggcc ctcagtttgc ctcccaatcc tttcgggact tctgtgctcg      3480
     gcaaggcatt tgccatatcc gggctcctcc ctttcatcct caatccaatg gtgaggcgga      3540
     gaggatggtt caaatgagga aacatgttga aggttcgtcc actatagagg ccttgacacg      3600
     ctttttgagt tcctatcggt tcactcccat cggggataaa agccccgcag aactgttaca      3660
     tgggcatcaa cctcgcaccc tccatcttct tcggccttcc ttgtctccat ctcctctgtt      3720
     cctgatcggc aaccttctcg gtatggccca ggggtaggtc tgggcccgag ggtttgggca      3780
     ccgccctaaa tgggttcccg ctgtggtgca cagtttgcga ggtcggcgcc tttgtcaggt      3840
     tcggacctgt gatggtgtgt agtgcgccac catgatcaat tgcgtccgcg ggtggcggct      3900
     gggcacctgg tgggcctgcc gggtctccgg tcacagcctc ttcctgaccc aggtggcacg      3960
     cctgttgcag agaggctact gccttcttct tgtgcactac tcctcctgtg gtcacctctg      4020
     caactcccca tgcggctccc gccactccag gtgccaaggg aagcaccctc ggtctgtgtg      4080
     ccagaccgac acctccgcat cgagccactg tacccctgtc cccaggtgat gcgacacccg      4140
     tcaggatgtt ccggaggata atgaccacca ccattcgctc tcaccagttg ttgctaaagg      4200
     tcgtcagtgc ccaagtctca ccatttctgc catatcacaa tgttccggca cggaacctcc      4260
     tcaggacgag acgcgagttg aatgccagat gcgagatgcc gcctgcgcca ctttcccagt      4320
     ccttggacga catacaaatg ccctaagcct cgtcactttg ttccatactc tcgtaccggc      4380
     caggaacctc tcttccccag caggacgtcc tgttcttcct ccatggaagg catggagatc      4440
     gatgactaag tgcttcctca gggcggagca tctacttccc aaagggggag gga             4493
//
ID   Gypsy-17_LMi-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-217
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 217 BP; 56 A; 64 C; 60 G; 37 T; 0 other;
     tgctacgaag cacgttcgac taagacgcgg actatttcaa atcccgccaa cagtactcca        60
     aatgtccgcc agaggtctcg ctcattgctc aacaaagcta ccgccacgac acctagcgga       120
     gagcggcgag cagagccgag gcagaggcag ccgcgtcggc agtccaggct cagacttgac       180
     aaggtgagcc tcgtatgttg aagtgtgcgt tacagca                                217
//
ID   Gypsy-17_MeUr-I repbase;    DNA;    INV; 4276 BP.
XX
AC   .
XX
DT   25-MAY-2021 (Rel. 26.06, Created)
DT   25-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4276
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3051-3051 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The ORF has 2 frameshift mutations.
XX
SQ   Sequence 4276 BP; 1188 A; 903 C; 1009 G; 1165 T; 11 other;
     cgtggcgacg aatcggactt atcgcgttat tttaccttgc aaatatgtcg tttaatagtc        60
     ctattggcat ttttacaacg ttcgaccatc tgtctcagga ttggaacagc tataaagcgc       120
     gtcttaatca gtggttcata gcaaacgacc ttgttgaggg aaatgacaag aaacgaaaag       180
     cgttgttgtt gagcgctctc agtgaatcga cgttcaaatt agccagtgac ttggcactgc       240
     cgaagaagtt agaagaagtg gatttcaata agatcgttat tttgttagat aaccacttta       300
     cacccaaacg ggttggkttc gcggagaaat ccatttttta ttcttccacg caaaagccgg       360
     gtgagagtca cactcaatgg gcagccaggc tcagaggtct ggcagcacac tgcgggttca       420
     aggatttgga agaagcctta ctcgacagat ttatcgtggg catgttgccc ggacccgagc       480
     gcgataagct attcgtgcag gaaccgaagg atatcaactt agcgaaagcc gtggatttag       540
     ctgagagcgt gcggtgtgcg cgcctggcgg ccgccgcgcc gaccgcgctg cccgccgagc       600
     acgtggcgct ggtcggcgcc ggcgcggccg ccgtgagcgc cgacggtgtg tatgtgatat       660
     ccaaaaagga aaagtgcagt gtttgtgggt tttctaacca taaatcgaat cggtgccgtt       720
     ataaaaatta tcagtgtaaa ttgtgtaacc gaaaaggtca tttacggaaa atgtgtacgt       780
     ataagaataa cgaagtaaat tgtgtggaag ggtttacgtt gacggagggc gatgatggtg       840
     agtcgttgat taattctatt cgctgcaaaa agggcgagcc gatgacggaa cgggttttag       900
     tcggaggtct gttgttggag ttccagatcg acagcggttc cgctgtaagt gtaatttcga       960
     atgagttata tagaaatacw tttagtcaag taccattagc ggtcactgat aaaaagttac      1020
     gtagctatac gggggatcag attcaaacgg tcggttatgt atctttgcca gtgtcktata      1080
     actctgttac ccgtaaattg gatttatttg tagtgcggaa tggcggccct ccattgctcg      1140
     gccgcgattt tattaggttg tttaacttag aattctcacc ggcgataaac accattcaat      1200
     catcagatga cggaacgatc acggagtctg cgtttatcag aggactaacc attaaatttc      1260
     caaaattgtt ttcgggtaat cttggaactt ttaataaata cacagtcgat ctgcgtttaa      1320
     aaccagactc caagccaata ttttttaaag ccagggccgt gccttattct ctaaaagata      1380
     aaattaacaa ggagctggat cgtttaatag gtttgggcat cttacggccg gttgatcact      1440
     ccgactatgc ttcaccaatt gtaccagttt tgagaaaaga cggcggatta cgtatttgtg      1500
     ctgatttctc tgttactata aataagcaat taataatcga taaatatcct ttaccaacct      1560
     ttgaggaact tttttctaga ttacatggtg gagttcagtt tagtaaatta gatttatcaa      1620
     tggcttataa ccaatttcgt ttaagtgagt cgtcccagaa gcttacttgc attaatacac      1680
     accggggttt atttcaattt actcgtttag ttttcgggct ctcaagtgca ccggctattt      1740
     ttcagcgagc aatggagtgc ttgctcgcgg gtttagaagg tacggtgttt ttccttgacg      1800
     atattttagt tactggagaa aatctaacta tccatagaag gagattaaca gcagtcttac      1860
     aacgattaga ggaagccggg ttgtcacttc agcataataa atgcgaattt ttwaaaaatg      1920
     agatttcgta tttgggtcac attattgaca aaaacggsgt tcgtaaatca ccggagaagg      1980
     tcaaagctat ctgggaagct gttagaccac agaacataca ccaattacaa tcatttctgg      2040
     ggttaattaa ttattatcgc aattttatac cagacgcgtc ctcgatttgt aagtcccctt      2100
     tatgascttt tacgtaaaaa cacaaaatgg gagtggacga cgatacacga aaatgcattc      2160
     aatacaataa aaaaaatatt aatttccgat aaaattttaa cacattttaa tccggcagca      2220
     accctaattt taacagtaga tgcgtcaccg acgggcttag gcgccgtatt atcgcagatc      2280
     ggtaacgatg gatcggaaag gccgatcgcg tttgcttcga ggacgttaac attggcagaa      2340
     aaaaaatatg cacaaatcca aaaggaagcg acggctataa ttttcggtgt ccgtcgtttc      2400
     caccaatatt tgtatggacg atccattcct ttcatcctga ggacggatca taagccattg      2460
     ttaacaattt tcggtccgcg aaggggmata cccgaagtat cggcaaatag gcttcaacgc      2520
     tacgcgttgt ttctatctgc atataatttt acgatcgaat acgtacgtag tggtgacaat      2580
     aatgctgatt ttttgtcgcg agcaccgctc gcgaaaccgg acgcggtggg cgaggcgcgc      2640
     gcgcaatctc cggagcctgc cgaggatcgc gccgcctacg tcaattttgt tttggcggga      2700
     aatctccccg tgaccgtatc cgaaatctgt cgggaaaccg accgtgatcc gattttagtt      2760
     aaagttaaaa aatatgtaat aaacggttgg ccgaggaagt taaacgattt ggagttaaaa      2820
     ccgtatcaca actgtcgctt gcagttatct gtggagcgcg gctgtctgat gcgaggccac      2880
     aaggtggtcg tgccggcagt cctccgtgag acgattttaa ggagttacac agctcacatt      2940
     ttggcatcgt aaagatgaaa gctgaggctc gcaaattcgt gtggttccct ggcatcgacg      3000
     cggcgctgga acggttagcc gctgcgtgtg cggtgtgcgc ggccttgcga cccgcgccac      3060
     cgcacgcgcc gctcgcgccm tggccacacc cgccgcaccc gttttatcgt attcacgtcg      3120
     atttcctagg tccattccat aatcaaatat atttaatcgt ggtagacgct tttagtaagt      3180
     gggtggaatg tttccccatg tcttcctcgt atggttcgaa ggccgttatt aacaaactgt      3240
     atgawttaat gtcccgggta ggtatwccca aggttatagt gagcgacaat ggcacctcat      3300
     ttactagtga ggaatttcaa tatttttgtt ccttgaacgg tatcaaacat atttgctctc      3360
     cgccctacca cccgtcgagt aatggtcagg cggaatgttt tgtgaaagtt atcaaaaagg      3420
     gtttgaaagc gataattttg tctaacgaaa ataaaaaacc cgttcaagaa aaaatattga      3480
     aatttttatt cgattaccgg aactccaaaa acagcaccac cgaaaaatca ccggctgagt      3540
     tagtatatgg gcgttcactg cgatcccggt gggatttatt aaatccgttt cacccgtcgc      3600
     cttcatcacc ggaactctct aaaattgtgg gttttcacca gtcttcacag attaagcact      3660
     ataaagggaa aattagatct acattcaaga taaatgataa agtttggatt actaaaaatt      3720
     tcaataataa tagattttgt tggatagaag gtgtggtaaa agagaaaatt gggaatgtaa      3780
     tgtattcgat ttacgtacct aagttgcagt gcgaggtaaa acggcatatc gaccaaatac      3840
     ggactcgggc gagctccccc aaaggagatc ccatgggtta ctgggaccca cacgtcatcc      3900
     ccaacctgca ctccgatcgg gggtcgggca accagtcaat tattaccatg aaggactcgt      3960
     ctctcgacgt gacaagaact ccaacagtat cggcccccac tgaagtaatt cctcagccgg      4020
     agggagagga ggaatgtcca actatgccag tggaagcgac tacgacagtc gaatcaccga      4080
     aattgatagt taaccctcgt cgtcaagcgg tgtcacccgt tttttattcg ccckcggggg      4140
     aacctaccag tacctctgac gtcagcaaac ctgaccctat ccaacggaat cctggatcta      4200
     aacgtaaccg tcccaatgtt aattataagc aatatttcta gtgttataag ggctctccgc      4260
     ttaaagggga agggat                                                      4276
//
ID   Gypsy-17_MeUr-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-136
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3032-3032 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 136 BP; 35 A; 31 C; 27 G; 43 T; 0 other;
     tattaagtat gtgtatcttc gtttatatgt gtgcgtgcga ggttgcatcc cgcgccattt        60
     tggttccgaa ataaaacagt gttaaactgg ctaccgtgtt taatggtcga cccccactcc       120
     tcactaaaac ataaca                                                       136
//
ID   Gypsy-17_MoPha-I repbase;    DNA;    INV; 4998 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4998
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1097-1097 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           679..4995
FT                 /product="Gypsy-17_MoPha-I_1p"
FT                 /note="SAP domain, gag, zinc finger, retropepsin,
FT                 reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MKDPNVFTVAALKNKLQQMNLSTAGNKAELISRLNQA
FT                 DPSGQWMDDIDTDVRTTATDSGEAAHVTTGRDTEPDEQMFEPQSEIPRNRN
FT                 REAREAELARRERDLMLRELEFMRRENEHLRATLQTTPGNGINLMTSKVSL
FT                 SNLKEMLPPFDGKKGLFQCWKEQLMLVKQMYQLDDNMTKLLLGAKLTGDAA
FT                 EWFHSMPAHLSMSVDELLVRMEAMYDQREKKLTLRKEFEARTWQSSETFAD
FT                 YFHKKIILANKVPISEDEIVDYLIEGIPVKSIKYHAMMQRFLNKESLLRAM
FT                 ENISLSSDHKTPHKMEKTSTNKHTVKAASSSKKNDGDAEGKADPKCYNCNQ
FT                 AGHIAVKCPMPKREKGACFKCFQTGHKAKECPSKEQAKSGKNKDEAEEKTD
FT                 VNSVSSGEVGDFHRKVDYQISDEANNCVVNLKLDTLLDTGSPVSFAKDDFI
FT                 PPSLVIPVVPEDNRYRGINDSALEVKGRVTAQITLDDRVQKNVSLLIVPAR
FT                 SMKASVVIGRDVLKLFFEKGDSSDKALEDQVIKEILSIRVNEPRKDSCEAL
FT                 NINQDVSIEAQKAIKKLFIEEYVKPKRPEQPVVDAEIKLRLKDDKPFHFSL
FT                 NRPSYAERKELRVLLDSLLAKGIIRPSESEYASPIVLVRKKTGDLRLCIDY
FT                 RELNKALIKDNYPLPNIEDLIDSLCGKKYFTKLDLRNGFYHIRMSEESIKY
FT                 TAFSTPFGQFEFMCMPFGLKVAPSRFQRYINQVLSELIRELKVVVYMDDIL
FT                 VISETIEQHIEILRRVFGLFIANRLELRIDKCAFLQTKVEFVGYLVTEAGI
FT                 SPTKEGVRSVQRIPVPRNIKEVHSFVALCSYFRKFIPAFSVIAKPLYDLLR
FT                 KNASFAFEVRELQAFEELKNKLTQAPVLAIYNPNSETELHCDASIAGFGAV
FT                 LAQRGSDKQFHPIFFFSRRTTEVESRYHSFELEMLAIIYALRRFKVYLSGI
FT                 KFKIVTDCNALTLAIKKKDISPRISRWILELLNYDYVTEHRPGTKMGHVDA
FT                 LSRLPSEILVIEDNSFELNLALSQNRDNKTRELKEILQKSEDPYFELRNGI
FT                 VFRKDNGELLFYVPSVMEAHVLHRYHDQMGHLAVEKTFDNVRKSYWFPKMR
FT                 QKIKDHIANCLKCIAFSPFEGKKEGYLHCIPKGEMPFEIYHIDHYGPIDKD
FT                 RLAKRYLLVVIDAFTKFVKLYPTKTTATQEVISHLLVHFSNFSRPRVIISD
FT                 RGTAFSSSEFESFCNDSNVQHVRIATHSPKANGQVERVNRVLGPMISKLIN
FT                 NDEKVYWYKIISDIEFAINNTVHKATNETPSKLMFGVEQRGKVVDAIREYL
FT                 DVTVNATENNRDLRQLRARAADRIKQSQKYNKEYFDKKRKPAHNYNIGDYV
FT                 MIKNIETAKGTSHKIIPKFKGPYEVARVLKNNRYVIKDISGHQMSQKPYEG
FT                 TWEAVNMRPWIKGVNFEGEVGSGKA"
XX
SQ   Sequence 4998 BP; 1676 A; 841 C; 1236 G; 1245 T; 0 other;
     actttcagaa gtgggattaa gttcgttaga tccattaatt aattgactcg agtggcttgg        60
     tggctcagta gcgatttata tccgtgtgat attaacgagg aagaagcgtg ccgaataccg       120
     aagataccga gacgcggaca accgtgctaa gtaacgacaa aaccgagagg agttcgggaa       180
     aggtcgagag caggaaccgc aagaggacaa gtctgaggaa cggcgaagaa aaaatcgtaa       240
     ttgagggtca aggacatcgg ttacgaggaa gacgagcgaa gcgaaggata taagtgagac       300
     gtattcgtcg cgtacgattc tgctgcgtgt gaattcgagt ggctcgagac tcgaaggaag       360
     agatacgcat aagtgtgaat tagaaggctg tgcgaataag ttcggcagta caaaagttcg       420
     agaagcatcg aagaaatttg gcggcaaggc tgcaagtgtg tgcgtcgtag aaggttagcg       480
     acaagaaacg gcgcgacggt cggtaacaac gcaggtttca gcgagtgagt ggcgctgata       540
     agaatacggt caataacgcg gtcgataatt tgatttcgat tttgaacgcg gtcaataacc       600
     aggtcgataa tttgagttcc gctggggcag cagctacgca ggataagaag gaacagatgt       660
     gtgatcgacg ataccgagat gaaggacccg aatgtgttca cggtagcggc gttgaagaat       720
     aagctgcagc aaatgaattt gagcactgcc ggcaacaaag ctgagttaat ttcgagactg       780
     aatcaagcag atccttccgg tcaatggatg gacgacattg ataccgatgt gaggacgacg       840
     gcaacagatt ccggagaggc ggcgcacgta acgacaggcc gagataccga accggatgag       900
     cagatgtttg agcctcaatc tgagataccg agaaatagaa accgagaagc acgagaagct       960
     gagttggcga gaagagaacg agatttgatg ttacgtgaat tagaatttat gcgacgagaa      1020
     aatgagcatt tgcgtgctac gttgcaaacg acgccaggta acggtataaa tttgatgaca      1080
     tctaaggtta gcttgtcaaa tttgaaagaa atgttaccgc catttgatgg aaaaaaaggc      1140
     ctttttcagt gttggaagga acagctgatg ttagtgaagc aaatgtatca gctagacgat      1200
     aacatgacca aattgctatt aggagcaaaa ttaacaggtg atgcagccga atggtttcac      1260
     tcaatgcctg cacatctttc catgtcagtc gacgaattac tggtgcgcat ggaagccatg      1320
     tatgatcaac gagaaaagaa gttgacattg aggaaggaat tcgaggcgcg gacgtggcag      1380
     tcaagcgaga cgttcgctga ttatttccat aagaagatta ttttggcaaa taaggtaccg      1440
     ataagtgaag acgagatagt ggactacttg atagaaggta tcccagtcaa atcaatcaag      1500
     tatcatgcaa tgatgcaacg gtttcttaac aaagaatctt tactgcgagc aatggaaaat      1560
     atttcattga gctccgatca caagactccg cataaaatgg agaagacgtc cactaataaa      1620
     catacggtca aggcggcgag ttcgagcaag aagaacgacg gtgacgcaga aggaaaagca      1680
     gatccgaagt gctacaattg taatcaagca ggacacatag cagtcaagtg cccgatgccg      1740
     aaacgagaga agggagcgtg tttcaagtgc tttcaaacgg gacacaaggc aaaggagtgt      1800
     ccctcgaagg agcaggcgaa aagcggaaag aacaaggacg aggccgagga gaagacggat      1860
     gtcaacagcg tgtccagtgg agaagttgga gatttccata ggaaagtaga ctatcagata      1920
     agtgacgaag ccaataattg tgtagttaat ttaaagcttg acactttgtt agatacgggt      1980
     agtcccgtca gtttcgcgaa agatgatttc ataccgccga gtttagttat accggtagtg      2040
     ccggaagata atagataccg cggaataaac gatagtgcgc tagaagtaaa gggacgtgtt      2100
     accgctcaaa tcacgcttga cgatagagta cagaaaaacg tatcgttgtt aatagtacca      2160
     gcgcgatcaa tgaaagcgtc tgtagtaatc ggtcgagatg ttttgaaatt attctttgag      2220
     aagggggatt cgtctgataa agcattggaa gatcaagtga ttaaagaaat attaagtatt      2280
     cgcgtaaatg aaccacgtaa agattcgtgt gaagcattaa atataaatca agacgtaagc      2340
     atagaggcac aaaaagcgat aaagaaatta tttatcgaag agtatgttaa accgaaaagg      2400
     ccagaacaac ctgttgtcga tgcggaaatt aagttgagac taaaagatga caaaccgttt      2460
     cacttttctc ttaatagacc gtcatatgcg gaacgaaaag aacttcgcgt tctactagat      2520
     tctttgctcg cgaaaggaat tatacggccg agcgaatcgg agtacgcttc acctatcgtg      2580
     ttagtacgta agaaaacggg agatttgcga ttgtgtatcg attatcgtga attaaataaa      2640
     gcgttaataa aggataatta cccgttaccg aatatagaag atcttattga ttcattgtgt      2700
     ggcaaaaaat acttcacgaa gctagattta agaaacggat tttaccacat acgaatgtcg      2760
     gaagaatcca ttaagtatac cgcattttcg acgccttttg gccaatttga gttcatgtgt      2820
     atgcctttcg ggctaaaagt agctccgtct cgatttcaga ggtacatcaa tcaggtatta      2880
     tcggaactca tacgagagtt aaaagtagtt gtctatatgg acgacatttt agtgatatca      2940
     gagacaatag aacaacatat cgaaatattg cgacgagtgt ttggattatt tatagcaaac      3000
     aggcttgagc ttaggattga taagtgcgct tttctgcaaa cgaaagtaga attcgtgggt      3060
     tatttggtta ccgaagcggg catcagtccg acgaaggaag gtgtaagatc tgtacaaagg      3120
     ataccggtac cacgtaacat taaagaagtg catagcttcg tagcattgtg ttcgtatttt      3180
     cgtaaattta taccggcttt ttcagtaatt gcaaaaccgt tatatgactt gttgcgtaag      3240
     aacgcatctt ttgcttttga agtacgcgaa ttgcaagcct ttgaagaatt aaaaaataag      3300
     ttgacacagg cccctgttct agctatatat aacccaaata gcgaaacaga attacattgt      3360
     gacgcaagta ttgctggttt tggagcagta ttggcgcaac gtggtagtga caaacaattc      3420
     cacccgatat ttttcttttc gagacgaacg acagaagtag aaagccgtta tcatagcttt      3480
     gagctagaaa tgttggcaat tatatatgcg ttacggcgtt ttaaggttta tttaagcgga      3540
     attaagttta aaatagtcac ggactgtaat gctctgactt tagccattaa gaaaaaggat      3600
     atatcaccgc gaataagtag gtggatattg gaactactta attacgatta tgttaccgag      3660
     catagaccgg gaacgaagat gggtcacgta gacgcattaa gtagattacc gagcgaaata      3720
     ttagtcatcg aggacaattc gtttgagtta aatcttgcac ttagtcaaaa ccgcgataac      3780
     aaaacgcgag aattaaagga aatattacaa aaatccgaag atccttattt tgaattaaga      3840
     aacggaattg tatttagaaa ggacaatggt gagttactat tttacgtacc gagcgttatg      3900
     gaagcgcatg ttttgcacag gtatcacgac cagatgggcc atttggcagt agaaaaaaca      3960
     ttcgataatg taagaaaaag ttactggttt ccgaaaatga ggcaaaaaat taaggaccac      4020
     atcgcgaact gtttgaaatg tatcgctttt tcaccgttcg aagggaaaaa agaaggatat      4080
     ttgcattgta ttcctaaggg ggagatgccg tttgaaattt atcacataga ccattatggt      4140
     cctatagaca aggatcggtt agcgaaacga taccttttag ttgtcattga cgccttcacg      4200
     aaatttgtga aattataccc gactaagact acagcaacgc aagaagttat cagtcatttg      4260
     ttagttcatt ttagtaactt tagtagacca cgtgttatca tatctgatag gggtacggca      4320
     ttttcatcga gtgaattcga atcgttttgt aatgatagta atgtacagca tgttagaatt      4380
     gcgactcatt cacccaaggc gaatggccaa gtagaacgtg ttaatagagt attaggacct      4440
     atgataagta agctcataaa taacgacgaa aaagtttatt ggtacaagat aatatccgat      4500
     atcgaatttg cgattaataa tactgtgcat aaggctacca acgagactcc aagtaaactc      4560
     atgtttggcg ttgaacagcg aggaaaagtt gtagacgcta ttcgtgaata tttagatgtt      4620
     accgttaatg ctaccgaaaa taacagagat ttaaggcaat tgcgagcgag agcggcagac      4680
     agaataaaac aaagtcaaaa gtataataag gagtacttcg ataaaaagcg taaacctgca      4740
     cataattata acattggcga ttatgtcatg attaagaata tagaaacggc caaggggact      4800
     tcccataaaa ttattcctaa atttaagggc ccgtatgagg tagcgcgagt tcttaaaaac      4860
     aatcgatacg ttataaagga cataagtggt catcagatgt cacagaaacc ttacgaaggt      4920
     acgtgggagg cagtaaatat gaggccttgg attaaaggag ttaacttcga gggcgaagta      4980
     gggtcaggaa aggccgaa                                                    4998
//
ID   Gypsy-17_MoPha-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-237
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1181-1181 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 237 BP; 57 A; 55 C; 52 G; 73 T; 0 other;
     tgtagtatgt aagataggtt taagaacgtg gtaaagctac cattgttagt cgtccctgag        60
     aggcgataga ttttcgtttg ttttcggtgc cgaacgagcg cgtccgtgca cgcagtctac       120
     cacgatcctg cggccaggaa acttgtcctg acgcagcgat atcatttttt tattaaacat       180
     tcataaccaa gtgcgtattt tatttgtgcc agccatccga ctatcctatc ccttaca          237
//
ID   Gypsy-17_MSe-I repbase;    DNA;    INV; 4265 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4265
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 894-894 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4265 BP; 1472 A; 678 C; 989 G; 1126 T; 0 other;
     tattttgggg gctcgtccgg gatattgttt agcaagatta aggcgtaaaa ctgcgaaaga        60
     cgaagagcag aaaaatggcg gaacaagacg tgcaaaccca attattcgtg ccggatatga       120
     taagattcag cggcgaagat cccgcgtata catcgtctaa gtgggcgcaa gatctagacg       180
     ataatgccga aatcttcggg tggacgccgc aacagcgtct tgtaattgcc cggagatcat       240
     taacgggaac tgctgagcta tggctgaaaa ctgaaagagt gcacaagacc tatgatgagt       300
     tgaagacggc catactaaag gaatttccag acgcaaccaa tataaaggag atgcacgagc       360
     ttatggcagc tcggaaaaag cgaaaagaag agtcctttta tcaatacatg ttaattatga       420
     aggagatggg taagagggcg aaattcccag actatatcgc cattcagtac atcatcgatg       480
     gaatcgtgga cttggaagtt aataagagca tattatatgg tgcggcaacg tacccggcgt       540
     ttaaagagaa attggcgata tatgaaatga ttaagaagaa atcagccaag catgtagaac       600
     gacctgcagt gaagcaagcc gagattactt cgcgttacca ctgctataat tgtggcggga       660
     aaaatcatgt agcaagcgca tgccgaaatg gtctaaaatg ttttaaatgc aaccaattcg       720
     gccatatttc aaccaaatgc acggcgacag aggcaaacat tggcgctagt ggcaacgtca       780
     cgtcggcaaa acagcagcat gtggcaagtg gatcgacgta tcaacaacga ccgtcgctaa       840
     agcagcgctg tgacgttagc caatcaaaac ccagcaaaca tgttggtatg gtcgaagcgt       900
     tgaccaatca aaacgacgaa gtgatcggcc atgatttata tgaagaaaac gtcagcggag       960
     ctgtcatgca agttgtaaac aataaacaaa gtcggcaaat actaagtaac agcgcgttaa      1020
     aggcagtcaa actaggagat ttcattgtgg atgcgttggt ggataccggc agcgacgtaa      1080
     atctgatgtc tgaagactta tgtgaagagt taaaagtgca gtgcgtagat gatgagactt      1140
     tattgtctgg actcggtctc gcgaaagtga aatcgtgcgg aaaagttttc gtcaatataa      1200
     gtgtagatgg acattgttat tctaatatta tatttcatgt aatatctaaa gaatcaatgc      1260
     cgtataggtt aataattggc caagagtttc ttaaaaacgt tgttatggta gtacgtgaag      1320
     gtgctgtgct attattgaca caagatgatg aatggttggc gagggtgaat tgttgtatga      1380
     gtgtttgtga agttacaggt cacatttcca acgtcaatat aaagacggag gtcacgcgtt      1440
     taatagaaga atacaggccc aaccaaatca aggaagcccc tatccagatg aaaataatat      1500
     tgaaggatga tattcctgtg gctcagcgac cccgaaggtt atcaataggg gagcaaaaaa      1560
     tagtagagga attggtagaa gagtggcttc ataaaggaat aattcgggta agtttttcag      1620
     agtatgctag tccaatagtt ttggtaaaaa agaaagatgg ttcgtcgagg ctttgtattg      1680
     attatcgtca actaaataag aaaataatta aagatgaatt tccattacca attattgata      1740
     acttgattga taagctcgga gatgctaaaa tatttagtgt gttagattta aagaatggat      1800
     tttaccatct caaaataagt gaggaatctg taccttatac atctttcata actcaccatg      1860
     gacagtttga gtttttgcgt gcaccatttg gtctgtccat atcacctaaa tatttttcga      1920
     ggtttgtttc aataattttt tagagagttg attgcgaagg gcgttatggc aatatttatt      1980
     gatgatatag ttataccagc ggtatccgag gcccaagctg ttgagaggct cagacaggtt      2040
     ctagatgtag cgtcacagaa tggattggag atcaactgga agaaagcaaa gctggtatgt      2100
     cacgagattg agtatcttgg acatttaatt aaagatggtg aaataagacc aagccctgac      2160
     aagatacagg cagttgctaa gtatccagaa cctaaaaata ttaagcaaat catgggtttc      2220
     attggtttaa cctcttattt caggaaatat ataaaagatt atgcaaaaat agccagacct      2280
     ttgacgaatt taatgaaaaa ggagttccct ttatatttga ggatgagcaa aggtatgctt      2340
     tcaatatatt aaaacaaatg ctcaccagtg aaccagtgtt aaagatttat aaccctaacc      2400
     taccaaccga gttgcacact gatgcctcaa gttgtgcgtt ggcagctata ttgttgcaat      2460
     tgcatccaga aggtgaactt catccggttc attacatgag ccgcaagacc actgaagctg      2520
     aaagcagata ctctagttat gagttagaag cacttgccat tgttgaagca gtaagaaagt      2580
     ttagacatta tttatatggt atacatttca aaattgtaac tgactgtaaa gcttttgaac      2640
     aaacattaaa gaaaaaggac ttgactccaa aggtggccag gtgggtcttt ctattggacg      2700
     aatatgatta tgtgatagag catagagccg ggcacaaaat gcagcatgct gatgccctga      2760
     gcagaaaccc atttgtggct acaattgtaa gtttgcaaga agagataagg aaaggccagg      2820
     aggctgatga cgaacttaag gctatcagag agataatact gaaaagcgga cagtattgcg      2880
     atttttggtt agataatgga attttgtaca agggtgaaga gaagcgattg gtggtaccta      2940
     ggagtctaga gaaagaaata atacggaaaa ttcaccaaaa agggcatttt tcagtcagaa      3000
     aaatgaaaga agcagtagga aaggattatt atttaaagaa tatgaataaa atgattgaag      3060
     aagtggtcgt aagctgtatt ccctgtttac tcgcaacaag aaaggagggg aagcaagaag      3120
     gttatcttaa cccgattaac aaagaagata ttcctttcca tacccttcat ttggatcata      3180
     ttggaccctt tactgaaaca aggaagcaat ataactatat tcttacaatg atagatgcct      3240
     ttacgaagtt tatatggctt ttcccaacta agtcaacatc aagtgcagag gtactcatga      3300
     aactacagat tcaccagcaa acttttggta atccatccag aatcataact gatagaggca      3360
     cagcattcac cagtaaagat tttgaagcgt attgtaagga tgaaaatata caacatataa      3420
     agataacgac tggagtgcca cgaggaaatg gtcaggtaga gcgggttcat cggattctga      3480
     ttcccatgtt aacaaagctg tgtttagagg acaagtcatt atggtatagg catgtaagtc      3540
     gagtacagag agctataaat agctcttatc aaagagcaat aaatacttca ccttttcagt      3600
     tgctaactgg aacgaagatg agatgtaaag aagacattca agtgatggaa ctattacaac      3660
     aagaaattat tgagagttat gatgaaagta gagaaagctt aaggcaagaa gccaagcagc      3720
     agatccaaaa aatgcaggat gagaataaaa aagcatatga taagaagaga aaacccagtt      3780
     catcttatga gctagatgac ttagtggcta ttaagagaac gcaattcgga ccagggcaga      3840
     aagttaagcc taagtttttg gggccataca gggttgtcaa agtaaaaaga aacgacaggt      3900
     atgatgttga aaagctgtat gacacaacag aaggaccaaa caagacttct agttctgctg      3960
     acctgatgaa aaaatggcca ggtattgtat gactttgagt tgtgtcacag aagcatagca      4020
     cctacttcac gatttaacag agtagagtat caatattaaa tgcggcattg ttccttctat      4080
     catttgtgtg ttttgttttt ttttgtataa aatagagttg ttactttata cttaatgtaa      4140
     ctgtaattaa tagaagttaa tatttgtaat ttgcttaagt tgtaagaatt gagatatgat      4200
     gaatgatagg aaagtaaggg gatgactgca tatctgaggg cagatatgaa ggcagaatgg      4260
     ccgaa                                                                  4265
//
ID   Gypsy-17_MSe-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-188
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 943-943 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 188 BP; 75 A; 17 C; 48 G; 48 T; 0 other;
     tgtaggatga acggaacgta atatgtgcgt gaaacggaat gtgtaatgtg tgagcgagaa        60
     ggaggatgtt tttgaaaatg tcggtagtta caagtatgga gaattaagac gcaaggaaga       120
     cgtgtaatgt aaaataatat aaaacgagta caaagtgaag aaaaatcttt tatttacaat       180
     atcccaaa                                                                188
//
ID   Gypsy-17_OrIn-I repbase;    DNA;    INV; 4905 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4905
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1558-1558 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           296..1690
FT                 /product="Gypsy-17_OrIn-I_1p"
FT                 /note="gag."
FT                 /translation="MDVSRLLKDEVDYELTVRGIKVEGTLDSLREKLRTIL
FT                 KMERSNQMSPPPKGLPDAVVDLTACEGKAEVLKGEIDRLQAGDKVDLRKIR
FT                 TKGSHLMFRLSRLDLDKIADDAKRAELEKKKAGLFDIVFKALSTLEKTDED
FT                 PGGVDEEPLTPHRRSANGLGRQLTEMRLSVSDEEAENQAQVVIKRKQIPIK
FT                 NWGLTFSGDGSGLGVHGFLERVEELKIARGFSSRDLFEGALDLFSGRALVW
FT                 FRAARREVSDWNGLVKELLEEFEPNDYEERLWEEIRSRTQGDDEPVGIFVS
FT                 ALKNYFFRLPTQTDESIILKTALKNLHPYYLERLALHDIRSLRQLVEKGRR
FT                 IEEYKYRATLHKAPPVNKGLLEPDLAYLPANKATRAPAVVSEVAATRESDS
FT                 TEPAKGGRFVRFRLQGACWNCDKPGHPYRVCKAPKTKFCARCGRREVDASN
FT                 CGCRRGSGNADGAQVRTDQA"
FT   CDS           1543..4848
FT                 /product="Gypsy-17_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QAGAPISSMQSTEDEILRTMWTQGGRRIQLRMPKRVG
FT                 KRRRGSGSNGSSLRREPLRSDQHSTEWKNWLRVIREFYAKKEEISSSRHKG
FT                 DRRPFVRIEIYGREVFGLMDTGASRSVLSEDMWRRLQSLGAKMSAPTSIGL
FT                 TQADGGDLRVLGSVLLPVVLDGKLKTITFLIVPKLSSDIILGVDFWAAMEL
FT                 IPGHCDTIESIERHEPSLIGRTRLIADQISRLQNLIDKWKEAKPGKLGRAC
FT                 DVEHVIDTGGEKPIKQRYYPVSPNVQDTLNKELDEMLEKGVVVPSQSPWSS
FT                 PVVLVKKHDGSTRFCVDYRKLNSVTKRDAYPLPFVSHILDRLRDGKFLSSI
FT                 DLKSAYWQVPLEKSSQEKTAFTVPGRGLFHFLRLPFGLHNAPATWQRLIDR
FT                 VLGPDLEPHVFVYLDDIIIVTSSFEEHMRVLEEVFERLKAANLTINWEKSC
FT                 FCRDELRYLGYVVNEDGLQVDPEKVQSILNFPTPKSVRQLRRFLGLASWYR
FT                 RFVPHFSEEVAPLTDLLKKNKKFDWGAKQEAALQSIKAKLITAPILSCPDF
FT                 SRPFVLQTDASCTGLGAILSQEFEDGEKAIAYASRGLTAAERKFTTTEHEC
FT                 LAVLWAIEKFRPYLEGMEFRVVTDHMALKWLHNLKDPQGRLARWAVKLQQY
FT                 QFTIDHRPGKNHQAADALSRQYEENEISAIDCSPNLLEPWYLRMVDQVTNN
FT                 PDAYPAWRVEGTKLFKRVVEKSRILGEDRPWKQVVPKAQRKNLLAEYHDGP
FT                 LSGHLGTFKTLSRLKEAYYWPAMAADTARYVARCPTCLSLKPSQAGPSGRM
FT                 GRQKIVTRPFQMISADLMGPLPVSSQQNRHLLVVCDYFTKHASLFPLRQAT
FT                 GKKVAQLVEERIFWMFGVPQIILTDNGGQFKSREFQNMLAQNKVRSWMTSL
FT                 YHPQANPTERVNRVIKTMISSYVEDNHRRWDKELPKLSFAINTAVHEATGY
FT                 SPAYLNFARELPRSGDDYPTDDEVEGGPRDVTMDRGTRIERSKNVPVLYEE
FT                 VKDRLERAHQKASQTYNARRRDVEFSPGDVVWCRTHPQSEAATYFSGKLAP
FT                 RFVERKVRRRVGSVSYELEKVEDGGDAGVWHVQDLKRDPGPEDQY"
XX
SQ   Sequence 4905 BP; 1279 A; 1123 C; 1370 G; 1133 T; 0 other;
     tttttggcgc ccaacgtggg gcccgctaat tttttttttc cttatctact ccgcctttgt        60
     tttgtttgcg ctggaggatt tagtgtttaa atttaactct tttcaatcct tttaaagttt       120
     acgaagataa tctctgattt tatttaaaat tctttttaaa tgattttcat gcatgagtga       180
     tgctcgattt tctttttgtt tttttctctc ccccctcccc ccttgtatgt aaactttttt       240
     ttgttagctt gtaaagttgt cctttttacc atttaagaaa gcaaaattgt cggaaatgga       300
     cgtttcgagg ctcctgaaag acgaagttga ctacgagctg accgtcagag gcattaaggt       360
     agaaggtacc ctcgattctc ttcgagaaaa actgcggacg attttgaaga tggaaagaag       420
     caaccaaatg tcgccgccgc cgaaggggtt accggacgct gttgtagatc tgacagcctg       480
     cgagggtaaa gccgaagtcc tgaaagggga aatcgacagg ctacaggccg gggataaggt       540
     cgacttaagg aaaattcgaa caaaaggtag ccacctgatg ttccggttaa gccgtctgga       600
     cctggataag attgcagatg acgctaagag agcagaactc gagaagaaga aggccggatt       660
     attcgatatt gtgtttaagg ccctttcgac tttggaaaag acggatgaag atccaggcgg       720
     cgttgatgaa gagccgctta cccctcatcg aaggtcggct aatggattag gtcgtcaact       780
     taccgagatg aggctatcgg ttagcgacga agaggcggaa aatcaagccc aggtggtcat       840
     taagaggaag cagatcccaa ttaagaactg gggcctcacc ttttccggcg acggtagtgg       900
     cctaggcgtt catggctttc tagaaagggt tgaggagctg aagattgctc gtggcttttc       960
     gtccagagac ctattcgaag gggcacttga cttattcagt gggcgagccc tagtatggtt      1020
     tcgggcggca cgaagggaag ttagcgattg gaatggactc gttaaggagc ttttggagga      1080
     gttcgagcct aatgactatg aagaaaggct atgggaagaa ataaggagtc ggacccaagg      1140
     agacgacgaa ccggttggca tcttcgtgag tgctctgaaa aattacttct tccgccttcc      1200
     aacccagacc gacgagagca ttatccttaa gacggcgctc aagaacctcc atccttacta      1260
     tttggagaga cttgcccttc atgatattcg ttcgctgcga caattggtag aaaagggacg      1320
     ccgaatagaa gagtacaagt accgagccac tctgcataag gcacctcccg ttaataaagg      1380
     tctgttagag cccgatttgg catacctacc agcaaataaa gcaactcgag ctccagctgt      1440
     ggtctccgaa gtagcggcga ctcgggagtc ggactccacg gaaccagcaa aaggaggacg      1500
     cttcgtacgt ttcagactac aaggggcatg ctggaactgt gacaagccgg ggcacccata      1560
     tcgagtatgc aaagcaccga agacgaaatt ctgcgcacga tgtggacgca gggaggtcga      1620
     cgcatccaac tgcggatgcc gaagagggtc gggaaacgcc gacggggctc aggttcgaac      1680
     ggatcaagcc tgaggaggga gccccttcga tccgatcagc atagcacgga atggaaaaat      1740
     tggttaaggg tcattcgaga gttttatgcg aagaaggaag aaatatcaag cagtcgacat      1800
     aagggagata ggagaccctt tgttcggatc gaaatttacg ggcgagaggt gttcgggctg      1860
     atggatactg gagcctccag gtcagtactc agcgaggata tgtggagacg actacagagc      1920
     ttgggagcca agatgagcgc tcctacctca atcggcttaa cacaagcaga tgggggagac      1980
     ctaagagttt tgggatcagt gcttcttccg gtggtcctag acgggaagct gaagacgata      2040
     actttcctca tcgtcccgaa attgtcttcg gatattatcc ttggcgttga cttctgggcg      2100
     gcgatggagc tgattccggg ccactgcgac actatcgaat ccatcgagag acacgagccc      2160
     tctctgattg ggcgcacgcg actgatcgcg gatcagatat cgagactgca aaatctcatc      2220
     gataaatgga aggaagccaa acctgggaaa ttagggcgag catgcgacgt cgaacatgtg      2280
     attgatactg gtggcgagaa gcccattaag cagcggtatt acccggtctc accaaacgtt      2340
     caggacaccc taaacaaaga gctcgacgag atgctggaga aaggagttgt cgttccctct      2400
     cagagcccat ggtcgtcacc ggtcgtgctt gtgaagaagc acgatgggag tacaagattt      2460
     tgtgtcgatt atcggaagct gaacagcgtg acgaagcggg acgcgtatcc tctcccattc      2520
     gtgtcacata ttttggatag attacgtgac ggcaagttcc tgagctcgat tgatttgaag      2580
     tccgcctact ggcaggtgcc cctggagaag tcgagccaag agaagaccgc gtttacagtc      2640
     ccgggaagag ggctcttcca tttccttcgt ttaccgtttg ggttgcacaa tgcaccggcg      2700
     acatggcaac gattaatcga ccgcgttctt ggcccggatc tagagccgca cgtgtttgtg      2760
     tacctagatg acataatcat cgtaacgtcg tcatttgaag agcacatgag ggtccttgag      2820
     gaagtttttg aacgacttaa agcggcgaac ctcacaatta actgggagaa gtcgtgcttc      2880
     tgccgagacg agctgaggta tttggggtac gtggtgaacg aggatggtct ccaagtcgac      2940
     ccagaaaagg ttcaaagtat tttgaacttc cctacaccaa aatcggttag acagctccgc      3000
     cgattccttg ggcttgcatc gtggtataga cggtttgtcc ctcactttag cgaagaggtc      3060
     gcgccgttaa cggatttgct gaagaagaat aagaagtttg actggggagc aaagcaagaa      3120
     gccgccttac aatcaattaa agcgaaattg atcaccgctc cgatactgag ctgccccgac      3180
     ttctcccggc cgtttgtact gcagactgac gcttcctgca cgggattagg ggcgatatta      3240
     agccaagagt ttgaggatgg ggagaaagct atcgcgtatg ctagcagagg tctaacggca      3300
     gcagaaagga aattcacgac tacagaacac gagtgcctag ccgtcctttg ggccatcgag      3360
     aagttccggc cgtacctcga ggggatggaa ttcagagtcg taaccgatca tatggcttta      3420
     aagtggcttc acaatctgaa ggacccacag gggcgcctcg cacgctgggc agtcaaacta      3480
     cagcaatatc agttcacgat tgaccatcga ccggggaaga atcatcaggc tgcggacgcc      3540
     ctgtcacgtc aatatgagga gaacgaaata agcgcgatag actgctctcc gaacttgctc      3600
     gagccttggt atctgcgaat ggttgatcag gtgaccaaca acccagacgc ttaccccgct      3660
     tggagggtag aaggcacgaa gttgtttaaa agagtcgtcg aaaagtctcg gattttaggg      3720
     gaagatcggc catggaagca agtggtgccg aaagctcagc gcaaaaacct tctggccgaa      3780
     taccacgacg gtccgctctc aggacatctg gggaccttta agacccttag tcggctgaaa      3840
     gaggcctact attggcccgc gatggctgcc gatacagcga gatacgtcgc tcgttgtccc      3900
     acctgcctgt ccctaaaacc gtcgcaagct ggaccgtctg ggagaatggg tcgacagaag      3960
     attgttactc ggccgttcca gatgatcagt gccgatttaa tggggcccct gccggtttcg      4020
     tcgcagcaga accgtcatct tctggtggtc tgtgattatt tcacgaagca cgcctcctta      4080
     ttcccgttaa gacaagccac agggaagaaa gtcgctcagc tggtagaaga acgaattttc      4140
     tggatgttcg gtgtacctca gatcatcttg accgacaacg gcgggcagtt taagtcaaga      4200
     gagtttcaga acatgttggc ccaaaataag gtccgatcgt ggatgacgtc attataccac      4260
     ccccaggcga acccaaccga acgagttaat agagtgatca agacgatgat ctcttcttat      4320
     gtcgaagaca atcaccggag atgggacaaa gagcttccga agctgagctt cgctatcaac      4380
     actgcggtcc acgaggcgac agggtactcg ccagcttatt tgaatttcgc gcgagagtta      4440
     cctcgatcgg gggatgatta cccaactgat gatgaagtcg aaggtggacc ccgtgatgtc      4500
     acaatggacc gagggactcg tattgagaga tcgaagaacg ttccggtgct ctacgaggag      4560
     gtgaaggatc gtctagagcg agctcatcag aaggcgagcc agacatacaa tgcgcgtcgg      4620
     cgagacgttg agttttcccc tggagacgtg gtgtggtgtc gtacgcaccc acaatcagaa      4680
     gcggctactt acttctcggg taagctagca ccccgtttcg ttgaacgtaa agtacggcgc      4740
     agagtaggca gcgtgagcta cgaactggag aaggttgagg acggcggcga cgcaggagtg      4800
     tggcacgttc aagacttgaa gcgagatccg gggccggagg accaatatta gagtcgacgg      4860
     gcttccgaac tttttttttg ttttttttta cgaaagggaa gagtt                      4905
//
ID   Gypsy-17_OrIn-LTR repbase;    DNA;    INV; 661 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-661
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1524-1524 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 661 BP; 200 A; 129 C; 134 G; 198 T; 0 other;
     tgttacgttt cccgtacaaa aggaaattta agtgggaaat aaaaacataa aacagaggat        60
     taggcacccg ggaaggagga gaagtagagg aagagagaga cagagagtcg accggccgac       120
     acggaagcga taagacaggc ggacgaggaa aattgtgaag aaaagaaaaa gaaaagacgc       180
     ttcggcggac caactatttt tccagacttc cttctccggc ctacggccac cgtctccacc       240
     actcagattg ggaaacttga aaaaggactt cgaagaagaa gaaaagaaaa gtaccgcctc       300
     attagtgagt aagctcctca ttttgtaaat agattaagaa taatcctccc tcgatcgatc       360
     gctattgtgt gaccccaccc cattttaatt tttgtgttgc cggaagtagc aattagttaa       420
     ttttaatttt tttttcctcc tctgtattaa ttttagtttt gtaaatatat cattttgtga       480
     ccggcgtaaa acttagaagt ttcgttttta ttttatattt ttttttccct ttggttttct       540
     tggttttacc ctaaataacc aagtggcgtc caactcgaag aacattttat tttattttta       600
     ttttaatcgt cccaccccgt ctccactgga gcatagccgg cattttgatt tcggcgtaac       660
     a                                                                       661
//
ID   Gypsy-17_PBa-I repbase;    DNA;    INV; 7847 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7847
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 703-703 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           202..1758
FT                 /product="Gypsy-17_PBa-I_1p"
FT                 /translation="MQRTPVKPAKNIDMNTRQGPRKPLSEEELERVRVAQE
FT                 ETSAKLQADSEVLARERAECQAELRALRKERCEAENSNTMLREMMEALTIL
FT                 RGDFNSLRREVDTRREPAECPSGQRFSEPPVLISELNDSISELPPAPKITY
FT                 REATEFVPYFDGYNIPLSKFLSACRQARDILPANYEKSLTRLLIAKLRGRA
FT                 HSAVADEPCDSVTQLSDLLVGAFGSFKTVAQYRGELTAIHLGAREHILDYI
FT                 DRVKELRAAIRDGERRARGFLDNQTTREIDDLTAQSFCEGLPTVYRLQLKP
FT                 EHYHCPSDAFAAAKAIAKREELEKQRYGNRPDGRLDSPRLSPITRQTSGHY
FT                 TSRLEKQRYDNRPDNRLDSARISPIPRQTSGHYTSRTQQDNARYPDPPRRG
FT                 ENNSRRAYADTPPVISQSNTNNSYTNRAARPTYAERTGSFQRSNENSRVVE
FT                 NQRQTKWCRYCKNSGHEIDECRKRQYYNERQSGNANDSPRRQDAARADQPR
FT                 PTRPINLINPTENITSANNQKSE"
FT   CDS           1842..5708
FT                 /product="Gypsy-17_PBa-I_2p"
FT                 /translation="MVDTGAAPNLIKKRNVRDETEVIKHDLLFLSGITEGT
FT                 IPTLGSINTTFLGNKIKLHLVPNDFPIEQEGILGSEFLRDNATIDFAKKVV
FT                 IWQGIPLPFSQHESIVIPARSRAAFYVNVLNHDMQIGYVPRIATEPEIYIG
FT                 EAIVTNRCGRAYLHAINTGNTDREVPVPTIELQAIEVLSNKRAEEARPTAR
FT                 RSQINSVEATNFNDRIANIEKLLRLEHLNEFEASHVKGLIKNNVDLFQVPG
FT                 DSLDHTDVCSHRIVTRDEQPINTKQYRYPPIHKEEITRQVDKLLANDVITP
FT                 SKSPYNSPLWIVPKKPDSKGNKQWRMVIDFRALNEKTIGDAYPLPNIEEIL
FT                 DQLGSAKYFSIFDLASGFHQIPMHEADAPKTAFSTPYGHYHFKRMPFGLKN
FT                 APATFQRLMDQVLTGLQGVELFVYLDDIVIYASSLKEHEAKFNKLANRLRT
FT                 AKLRLQPDKCEFLRKEVTYLGHVITKDGVRPDPEKTKAVERFPRPANVKNI
FT                 KQFLGLAGYYRRFIPDFSKVAKPLTQLLKKDTPFQWLESQERAFDYLKTAL
FT                 CTEPLLQYPDFTRPFIVTTDASKSAVGGVLSQGEIGKDLPIAYASRILNTA
FT                 EQNYSTIEKELLAIVYCVNHFRPYLYGQKFKLVTDHKPLTWLHSVKDPTSR
FT                 LIRWRLKLAEYEYEVIYKAGKINANADALSRNPILPVRPQKHATPLNDDSD
FT                 ESLFSNINKDNSQESSGSHADIPLSDKESTELDSDNDDHDETGSDDDSENE
FT                 PLVDRVNTPFELKRRFLNETNERLSWRKDNLAIFVSQTGDPLDKGALDLKE
FT                 SNRYPSMDELSIGKVKVIRDKKRYIIAMVIEQGRGISALTEMQALRTAIGS
FT                 LVDATRELDLATLSICKSSVGTIEWRTIYRMLRDTFWDEGTKITICNNLTS
FT                 IPDNENRDEIIKECHASAMGGHKGITKTYNRLKTRYHWPGMKRDIQNVINN
FT                 CRECHIKKLVRIKPRQPMILTDTPDRAFDKVSMDIMGPLPTTSAGNSYILT
FT                 IQDLLTKYSIAVPLRNPAAIDVAEAFTNEFICIHGAPKALLTDQGTHFLNN
FT                 LMRNIARKFRIKHYKTTAYRPQSNGSIERSHQVLWEYLKQFVNKHSDWDCH
FT                 LRLANFSYNTSVHEGTLFTPHELVYGRLARTPTSEPAPDDDENESYTRYLT
FT                 ELYNKISEAQAMARRNLINAKIKSKKYYDKRAVQRNFCIGDQVYLLNEPRK
FT                 NKLSDQYSGPHKILEIFKNNNVRIALKSGKTRVVHVDKLKRPGNRSPTTTD
FT                 SPPDGTSRSKECAASVSYRRTPDKSTCR"
FT   CDS           5702..7657
FT                 /product="Gypsy-17_PBa-I_3p"
FT                 /translation="MSIIVTIACIFLPATVYGLTGYDCGGTGLNITTLSLL
FT                 DVGDCDVEDIEPVKTSVHIQLLQTAEYETISAYQCKVKIDRTIYYCGMHSH
FT                 VSIVTEGRKQYVKEIGAYNCQKIHETGSLAIGTAFVDRLINNATNHRSVTL
FT                 AGQAFTDGRCAGTQYTDGYGTWENVVVQAAVEITLRTFTMPFKRSISKVNL
FT                 PSGTQCPSAQGGCNDWDGTETFWNLPYTDGCHFNKYDILYEGTATKLSPKK
FT                 YEQAPEVYTVTTKDTTFALAKTTETNLCGYKLYHTEHPKLLIFETQPGRSF
FT                 QSKTKTSVDNLDIFSYVNSKFVYVEKHIKTQLTRLYKDIMEQKCALEKQIL
FT                 QNALSLSSIAPDEMAFRIMKTPGYTAVTAGEVIHIIKCIPVDCKLRRTDNC
FT                 YNELPVTYRNHSLYLQPRSRILSKTGTPKDCNELLPNLYKIDTTWYRLTGS
FT                 ITESLPPPTIQPLTKPSWKYVSPDALATSGIYTPEDLDRLRDHIMFPVEKP
FT                 SMLNTIARGAMGREIPKGTVAMLNLLDEASLDHIAENAGRKLWDGFITFGS
FT                 ASAGVLALFIIGRTIKLLVDTIIHGYALHSIYGWSIHLIGAIWSSVTHLLL
FT                 FLGKSSKTKVTNEEERRQEEASAPTPQEKDSEVKTVPEQSYTELRKYLHEN
FT                 ERM"
XX
SQ   Sequence 7847 BP; 2548 A; 1889 C; 1677 G; 1733 T; 0 other;
     acaaattggt gacagcggtg ggatagatac atttttgggt attccaccac gccgcttatc        60
     gaacccggta gaccgctccc gtcggttcga ttaaatttcg tatccgaatg agtcgtaaca       120
     ttattataaa tcggacgata atcgtcatcg ctaatatttc gcgcgcgtag aagaagcagt       180
     tatttctcac tttaattatt aatgcaacgg acacctgtca agcccgcgaa aaatatcgat       240
     atgaatacgc gacaaggccc aaggaaacct ctttcggaag aggagctgga gcgtgttcgc       300
     gttgcgcagg aagaaaccag cgctaaatta caagccgatt cggaggttct ggctcgcgaa       360
     cgagcagaat gccaagcgga actccgcgca ttgcgtaaag agaggtgcga ggccgaaaac       420
     agtaacacga tgctccgcga aatgatggaa gctcttacca ttttacgagg cgatttcaat       480
     tcattacgac gagaagtaga tacacgccgt gaacctgcag aatgcccgtc ggggcaacgt       540
     ttttcagaac cgcccgtatt aataagcgag ctgaatgatt cgatatccga gcttccgcct       600
     gctcctaaaa ttacgtaccg agaggcgacc gaattcgtgc catatttcga tggatataat       660
     attcccctct cgaaattctt aagcgcatgc cgtcaagccc gcgatatact ccctgctaat       720
     tacgaaaaat cgctgacgcg tcttttgata gcaaaacttc gcggccgagc gcattcggca       780
     gtagcagacg agccgtgcga ttcggtaact caattatccg atcttttggt aggagcgttt       840
     gggtcattta aaacagtcgc gcagtacagg ggagaattaa ccgcgatcca cctgggagct       900
     cgtgaacata ttctcgatta catagatcgc gtcaaagaat tacgtgcggc catccgagac       960
     ggagaacgtc gtgctcgagg ctttctcgat aatcagacaa caagggagat tgatgacctc      1020
     accgctcaga gtttttgtga gggactccca acagtataca gattacagct caaacccgag      1080
     cattaccatt gtccgtccga tgcttttgcc gccgctaagg caatcgccaa gagggaagaa      1140
     ttagaaaaac aacgatatgg taatcggccg gacggaaggc ttgatagccc tcgcttatcg      1200
     ccgataacgc gacaaacatc cggacactac acttcccgtt tagaaaaaca acgatatgat      1260
     aaccgaccgg acaacagatt agacagcgcc cgcatatctc cgataccgcg acaaacatcc      1320
     gggcactaca cttcccgtac acagcaagat aacgcgcgat acccggaccc gccgcgtcgc      1380
     ggagaaaaca attccagaag ggcgtatgcg gatactccgc ccgtgatatc acaatctaat      1440
     acaaataatt cctacactaa ccgcgccgcc cgcccgacgt atgccgaaag gactggctcg      1500
     tttcagcgaa gcaacgagaa ctcgcgcgtc gttgaaaatc aacgacaaac taaatggtgc      1560
     agatactgca aaaactcggg acacgaaatc gacgagtgta gaaaaaggca atattataac      1620
     gagcgccagt cgggaaacgc gaacgattcg ccccgcagac aggacgcggc gagggcggat      1680
     cagccgcgac caacgcgtcc aataaactta ataaatccga cggaaaatat aacaagcgcg      1740
     aacaatcaaa agtcagaata gctactttaa accctaacga attcagtcac gcgccaacag      1800
     taagcgtatc tatcgacggg ttgttacccc gcgtaagatt tatggtagac accggggccg      1860
     cccccaattt aataaagaaa cgtaatgtac gagatgagac agaagtaatc aaacatgacc      1920
     tgctgttcct tagtggcata acagaaggta ccatccccac tttggggtca atcaatacga      1980
     catttctcgg aaacaaaatt aaattacatc ttgtgccgaa cgactttcca atagaacagg      2040
     aagggatcct aggatccgaa ttcctacgcg ataacgccac gatagacttc gcaaagaaag      2100
     tcgtaatatg gcaagggatc cccttgccct tttcgcaaca cgaatcgata gtaatcccag      2160
     cgcgatcccg cgccgctttc tatgtaaacg tattaaatca tgatatgcaa ataggctatg      2220
     tccctcgcat cgcgacagaa ccggaaatat atataggcga ggcaattgtt acgaatcgtt      2280
     gtggcagagc ctacctccat gcgattaata cgggaaatac agaccgcgaa gtgccggtcc      2340
     ctacaatcga gttacaagcc atcgaagtat tgtctaacaa acgcgcggag gaagctagac      2400
     ccaccgcgcg gcgctcccaa atcaattcag tagaagccac gaatttcaat gatagaattg      2460
     ccaatatcga gaaactactc cgcttagaac atttaaacga atttgaagca agccatgtca      2520
     aaggcctaat aaaaaacaac gtagatcttt tccaagtgcc aggagactct ttagatcaca      2580
     cagacgtatg ttcgcaccgc atagttaccc gcgatgaaca accgataaac actaagcagt      2640
     atcgctatcc ccctatccac aaggaagaaa ttacgcgaca agtcgataaa cttttggcaa      2700
     acgacgtgat tacaccttca aaatctcctt acaattctcc cttgtggata gtgcccaaaa      2760
     aaccagactc caaaggcaat aaacaatgga ggatggttat cgattttaga gcgttaaatg      2820
     aaaaaactat aggggacgcg taccccctgc ctaacatcga agaaatatta gaccaattag      2880
     gcagcgctaa atattttagt atatttgact tggcgtccgg tttccaccag attcccatgc      2940
     acgaagccga cgcaccgaaa acagcctttt ctacgcccta tgggcactat cacttcaaac      3000
     gaatgccgtt tggattaaaa aacgctcccg cgactttcca aaggcttatg gatcaagtgc      3060
     tgaccggact ccaaggagta gaattattcg tttacctcga cgacatcgta atatatgcta      3120
     gttccctgaa ggaacacgaa gctaaattta ataagttggc gaatagactg cgaaccgcga      3180
     aactgcgatt gcagccagac aagtgtgaat tcttgcggaa ggaggtgaca tatcttggac      3240
     acgtaatcac aaaagacggg gtacgtcctg accccgagaa aacaaaggcg gtagaaagat      3300
     ttccgcggcc agccaacgtt aaaaacatta aacaattcct aggccttgct ggctattaca      3360
     ggcgatttat ccctgacttt tctaaggtag cgaaaccgct cactcaattg ttgaagaaag      3420
     acacaccttt ccaatggctg gaatcgcagg aacgcgcttt tgattattta aaaacagccc      3480
     tgtgtaccga accgttgtta caataccccg atttcacgcg cccgttcatt gtcacgaccg      3540
     atgcttccaa aagcgctgta ggaggcgtac tcagtcaagg cgaaatagga aaagatctac      3600
     ccatagctta tgcatcgcga atactgaata ccgccgaaca gaattattca actatcgaga      3660
     aggagctgct ggcaatagta tactgcgtaa atcatttccg cccttactta tatgggcaaa      3720
     agtttaaatt agtcactgat cataaaccat tgacctggct tcattcggta aaagatccga      3780
     cctcgcgttt gattcgatgg cgtcttaaat tagctgaata tgaatacgag gtaatctata      3840
     aagcaggaaa gataaatgcc aacgctgacg cgctctcccg taacccgatt ctcccagttc      3900
     gaccgcagaa acatgcgacc ccgctcaacg acgattcaga cgaatccctc ttcagtaaca      3960
     taaacaaaga taactctcaa gagtcgagcg gatcacatgc cgacattcca ctgagcgata      4020
     aagagagcac ggaactagat tcagacaatg acgaccatga cgagacaggc tccgacgacg      4080
     actctgaaaa cgaaccgctg gtagacagag tcaatacccc cttcgaactt aagagacgat      4140
     ttctaaacga aacaaacgaa cgattgtcat ggagaaaaga taatttggcg atattcgttt      4200
     cacaaaccgg tgacccccta gacaaaggag cactcgatct aaaagaaagt aacagatatc      4260
     cctccatgga tgaattatcg ataggaaaag taaaagtaat acgcgacaaa aaacgttaca      4320
     taatcgccat ggtaattgaa caaggaaggg gaatctccgc gctaacagag atgcaagccc      4380
     tccgaactgc aataggctcg ttagtcgacg caactcgaga attagactta gcgacattat      4440
     cgatttgtaa aagtagtgta ggcacgatag aatggcgaac aatatataga atgctcaggg      4500
     atactttctg ggacgaagga acgaaaatca caatttgtaa taacttaacc agtatacctg      4560
     ataacgaaaa ccgcgacgag ataattaaag agtgccacgc ctctgcaatg ggcggacaca      4620
     aaggcataac taaaacgtat aatcgactaa aaacgcgata tcactggccc ggcatgaaac      4680
     gagatataca gaacgtaata aataactgtc gggaatgcca tataaagaaa ctagtccgaa      4740
     taaaaccaag acaaccaatg attctaacgg atacacccga tagggcgttc gataaggttt      4800
     ctatggatat catgggaccg ttgccgacaa cctccgccgg aaactcttat attttaacta      4860
     ttcaagattt gttgacaaaa tattcaatag ctgttccttt aagaaatccc gcggcaatcg      4920
     acgtagccga agcatttacg aacgagttca tatgtattca cggcgccccg aaagctctac      4980
     tgacagacca ggggacacat ttccttaata atctaatgcg aaatattgca cggaaattcc      5040
     ggataaaaca ttacaaaacc acagcgtacc gaccgcaatc aaacggctcc atcgagcgat      5100
     cccatcaagt tctatgggaa tacttaaagc aattcgtgaa taaacacagc gactgggact      5160
     gtcatcttag gctagcaaac ttctcatata acaccagcgt acacgaaggg acattattca      5220
     ctccccatga gttagtttat ggtaggttag cgagaacccc tactagcgaa ccggcgccag      5280
     acgacgacga aaacgaaagt tatacgcgtt acctaacgga actatataat aaaatttctg      5340
     aggctcaggc aatggccaga cgcaatttaa taaacgctaa aataaaatct aagaaatatt      5400
     acgacaagcg agcagtgcag agaaactttt gtataggcga tcaggtatat ttacttaacg      5460
     aaccaaggaa gaataaactg tccgaccagt attctggccc gcataaaata ttagagattt      5520
     tcaaaaataa taatgtaaga attgcgttaa aatcaggaaa aacgcgcgtt gtacacgtag      5580
     ataagttaaa gcgaccgggg aatcggagcc ccaccacaac tgactcccca ccagacggca      5640
     cttcgaggag taaggagtgt gctgcttcag tcagttaccg acggacccca gacaaatcaa      5700
     catgtcgata atcgttacca tcgcctgcat cttcttacca gcaacagtct acggcctcac      5760
     aggatatgac tgtggcggaa cgggactcaa cattactact ctctccctcc ttgacgtagg      5820
     agactgcgac gtggaagata tcgaaccagt caaaacatct gttcatatac aactacttca      5880
     gacagccgaa tacgagacaa tctctgcata ccagtgcaag gttaagatcg accgaacaat      5940
     atattactgc ggaatgcact cacatgtctc aatagtaacc gagggtcgaa aacaatatgt      6000
     aaaggaaatc ggagcataca actgccaaaa gatacacgaa accggatcct tggccattgg      6060
     caccgctttc gttgaccggc taataaataa cgccaccaac catcgcagcg taacgctggc      6120
     aggacaagcc tttactgatg gtcgctgcgc aggcacgcaa tatacggacg gctacggaac      6180
     ttgggagaac gttgtggtgc aagcagccgt cgaaataact ctacgcacgt tcacgatgcc      6240
     ttttaaaaga tcgataagta aagtgaatct gccttcagga acccagtgtc catcagcgca      6300
     aggaggctgc aatgactggg acggcacgga gacattttgg aatctcccct acacagacgg      6360
     ttgccatttc aacaagtatg atattttata cgagggtaca gcaacgaaat tatcaccaaa      6420
     gaaatacgag caagcacccg aagtatatac agtgaccacc aaggatacca ccttcgcatt      6480
     agccaaaact acagagacaa atctttgcgg atacaagtta taccacacgg aacaccccaa      6540
     actactcatt ttcgagacgc agcctggaag atccttccag tctaaaacta aaacctctgt      6600
     agacaattta gatatcttct catatgttaa ctctaagttt gtatacgtag agaagcatat      6660
     taaaacacaa ttaacacgat tgtacaagga tataatggag caaaaatgtg ccctagagaa      6720
     acaaatcctg caaaacgccc tctcactatc cagcatcgct ccagacgaaa tggcattcag      6780
     aatcatgaaa acaccgggtt atactgcagt cactgccggt gaagttattc atataataaa      6840
     atgcataccg gtggattgta aactacgacg caccgacaat tgctacaacg aactcccagt      6900
     gacttatcga aatcactcac tatacctaca accaagatca cgtatcctct cgaagacggg      6960
     cacacccaaa gactgcaacg agttgctacc caatctctat aagattgata ccacctggta      7020
     cagattgaca ggtagtataa cggaatcgct acccccacca accatacaac cactcaccaa      7080
     accttcgtgg aagtatgtga gccctgatgc attagccacc agcgggatct acacacctga      7140
     agacctggat cgactcaggg atcatattat gtttcctgta gagaaaccct cgatgcttaa      7200
     tacaattgcg cgtggcgcaa tgggccgaga aatacccaag ggaactgtag caatgcttaa      7260
     cctcttggac gaagcctcac tagaccatat cgcagagaac gcaggtagaa aactctggga      7320
     tggttttatc acatttggat cggcgagcgc tggtgtcttg gcattattca taattggcag      7380
     aactattaaa ctgttagtgg acacaataat ccatggttat gctctacact cgatctatgg      7440
     ctggagtatc catttaatcg gagctatctg gtcgtcagta actcacctcc tgctattcct      7500
     gggaaaatcc agcaagacta aggtaacgaa cgaggaagaa agacggcaag aagaagcatc      7560
     agcgccgacc cctcaagaaa aggatagtga agtgaaaaca gtgccggaac aatcgtacac      7620
     agaattgcga aaatatctcc acgaaaacga acgaatgtaa gaaatactaa gttaagcgtt      7680
     gttataaagt aatgtaaaaa ttgtatctcc taaaaccttt aggtaatatc ttagctaata      7740
     tttgatcatt tatgatttat atctttatat ctttatatct tttgtactta ggattaagat      7800
     gagaaatgtc ggtcggagtg cctccatttc tattataagg ggggggg                    7847
//
ID   Gypsy-17_PBa-LTR repbase;    DNA;    INV; 1871 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1871
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 704-704 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1871 BP; 535 A; 487 C; 361 G; 488 T; 0 other;
     tgtcacgtct gtcgcgtcag aataaatgaa ttaattaata attttatttc ctattgtaaa        60
     ggtattaccc ttttcaattt tacaatgata aatctttata acatgaagca aagaacagac       120
     gtggtacgtc cctaggctac cgcgagcccc accatggcga tcctctagcc tcccacgcga       180
     gcgccgcact cccaccacca gcgcctccca catcgagcgc gcaccccacc atagcgtcgc       240
     cgcagtttcg agccgccgaa tcgaagcact tcagtgcacg gccgactgta ggcagttcat       300
     ctcgcgaatc cgactggaga ggacctccag tccgtgaact ccctcttcta attcgattcc       360
     aattctagta ttaagaaagt tcaattccaa ttctagtatt aagaagtaac tcgaatccaa       420
     tctcaaatca attccaattc tatcgtagtg ctagtgaatc taacgtcact caattcaaat       480
     tcaagctctt ataaatctaa ttttaaacgt gttttacaat ttaatcaatc tttgtatcaa       540
     ttaattttgt atttgaatac cttacaatat atatataagt gaaaagtgat tagtgtgtgt       600
     caaacaatta ataaatccca atccttccac ccatcctagc gaaacgtaca atcgacagag       660
     ttcgcgaggt agagtgacca cgcgtaattt aatcaaataa taagcgaccc gggaagccgt       720
     gcttgctctc ttggctagca agttgtgcgt ccacccgcac tactccccaa gagaggtatc       780
     gcttctcacg cattttaatt cgccaaatta taagatatct gacaacctgt cccgcctctt       840
     ggctagcaag ttgtgcgtcc acccgcacta ctccccacag agggctacag gttctcatcg       900
     cgatagaaag ctcaatcttt tattcgtaac ttgtaaggga agcaacattt cccttcatgg       960
     tcactctcga tgccgaataa acgcaaaaac cgcgccggac gtcagcgtgc gattcgtcga      1020
     actctatatg aaattaaatc cgcgctcacc ggtgatttga gtgaattgct cgggtgcgaa      1080
     gaaatctacc aaccagaata cgaagcacat ttcaagaata gcctgtgggc tccaagtccc      1140
     ccgaatccag caacgttgtc tccagacgcc ccgcatccta gtgtgcatcc cgagacccgc      1200
     caggccgaca gcgagaatta aaagcccgaa tccaggaacc gggccaacga aaggtaggtg      1260
     aatttccatt tcctatttgt gaatcgcgtt atgtgcagag gacaatcgga aggctcacgt      1320
     caaaagaaaa cacattcggc cgccgtcttt aatcatcaaa taagtatctc tcggtgtgta      1380
     gtcgaattcg ggtatggtct tgtcggcata gctaccgata caaattccgc caacctcata      1440
     tgcctagagt gcaaatcccg gtataatctc aattgtgatc aactacaatt cacagctatc      1500
     ttaaggcatt acattaatgt tgggactact cggaaagaaa ggctttgcaa tttttgcggt      1560
     actgaattag ctctctggcg tgaggtaacc gactgcgatc cctgctccga agcatttgcg      1620
     gcattcttag aatatttacg cgaagaaaat acttcttttt acgcactgcc aaatcctatc      1680
     gtcattgacg tagatgcaga gataggactg catgatatta ttttctctag gagactatcg      1740
     acctttttac acggtctata cactcgcaat ttatatcaat aatccagtca aattcagctg      1800
     taaaaaccaa cacgcagccc agtgcgagca gactcgcccc acgcgtagca cgtctcgcct      1860
     gcgacgtaac a                                                           1871
//
ID   Gypsy-17_PPo-I repbase;    DNA;    INV; 975 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-975
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2987-2987 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..539,457..972)
FT                 /product="Gypsy-17_PPo-I_1p"
FT                 /translation="LRILKLKHKDEPIVNLIPYAIIAYNSSIHSFTKCRPF
FT                 DLLTGHFDPRDLNDINFNEXLLQQYLQNHKEQMRIVYEIVNQSTLASRTAL
FT                 IDNRNKHREPEIEYVPQQQVFVRNPFANRQKTAPRYTQDTVLADLPIHIYT
FT                 SKKRGPVAKNRLKRVPKAAKLFQDTSTVDDKNDTTSGDKNNVFLRQPNCFR
FT                 ILLLLTIKMIQPQEIKIESLADGPGLLPYKLGPTRLTTNYHTFLQYIKLSD
FT                 IEDRTDTIKTQLRTFQTQLDNETYLLYETQINYLTNKLDKVTDQLKSLEPT
FT                 RAKRGLVNGFGSIIKSITGNLDYSDALKYDHAIKTLQDSQTKVVIDFNNHI
FT                 SISKEWMS"
XX
SQ   Sequence 975 BP; 357 A; 198 C; 152 G; 267 T; 1 other;
     cccttaggat tctgaaactt aagcataagg atgaacctat tgttaatctt ataccttacg        60
     ctataatagc atataatagt tcgatccata gcttcactaa gtgtaggcct ttcgatttat       120
     tgacaggaca cttcgatccc agagatctta atgatattaa ctttaatgaa cmccttttac       180
     aacagtactt acaaaaccat aaagaacaaa tgaggatagt gtacgaaata gtaaatcaat       240
     cgactcttgc ttctcgcaca gctcttatag ataatagaaa taagcaccgc gaaccggaaa       300
     ttgaatatgt tccacagcaa caggtatttg ttagaaatcc ctttgcaaac cgccaaaaaa       360
     ctgcccctcg ttatactcaa gataccgtct tagccgatct tcctatacat atttatacat       420
     caaagaaacg cggcccggta gctaaaaata ggttaaaacg tgttcctaag gcagccaaat       480
     tgtttcagga tacttctact gttgacgata aaaatgatac aacctcagga gataaaaatt       540
     gaaagcctag ccgatggacc aggactatta ccttacaaac ttggaccgac acgactaacg       600
     actaattatc atacattttt acagtatatt aagttaagtg acatagaaga cagaactgac       660
     acaataaaga cccaactgcg taccttccag actcaacttg acaatgaaac ttacttactg       720
     tatgaaaccc aaattaatta tctcaccaat aagcttgata aggtaacaga ccaattaaaa       780
     tcattagaac ctactcgtgc taaaagaggc cttgtaaacg ggtttggctc tattataaaa       840
     agcataactg gaaatctaga ttattctgat gccctaaaat atgatcacgc tattaaaact       900
     ttacaggata gtcaaactaa agtagtcatt gatttcaata accacataag tattagtaaa       960
     gaatggatgt ctcga                                                        975
//
ID   Gypsy-17_RP-I repbase;    DNA;    INV; 4917 BP.
XX
AC   ACPB02041249;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_RP_;
KW   Gypsy-17_RP-LTR; Gypsy-17_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4917
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02041249; Positions    6058    1142.
XX
CC   Positions [2058-2564] - Reverse transcriptase
CC   Positions [3782-4093] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..3806
FT                 /product="Gypsy-17_RP-I_1p"
FT                 /translation="MSKLGDYQAIAANISNAALSTIVSFHKFIFSEEGNRN
FT                 KRKRIKEFTGFNFLKDSESYKDKFSWIKENLKISELYKICALLNLECEDDF
FT                 DDMTITLLDCLIDLALLAPKKKVEEDSDSEHEETEAEGKSYNEYVDAEVTT
FT                 TKKEKANKFVMSFRDVQDSIRSFSGENDYSIEAWASDFEELSDIMEWSDIQ
FT                 KLVFAKRSLTGLAKLFVQSEKGLCTFNKLKAALLEEFSHRISSADLHRLLS
FT                 ERRAKKNESLQQYYFTMREMASRGSVEPKALIQYIVDGIPDAVNNKITLYE
FT                 AKSLKELKDKIIIYESIREKLENKQKPSALTFKTEGSKASKFTQNNKCYNC
FT                 NGEGHRAAECPRPRRERGSCYTCGEKGHLQNSCPNRKRSAGTSVAASTSKV
FT                 VGIVAEKPPLPPYYTSLVIDGSRVQSEVEAVIDSGSCISLIRNDMVESDRI
FT                 LVAPSNIKQYEGINKSKLSIIGIFCTKVFLNSCNIFLDINFYVVNNNAIPC
FT                 SCLLGRDFISNKQICITFSDTVSIVASKHNLDIKDESYDSNVQALMLINNN
FT                 VVTSEKEIILNQNLSIENKLSVEKLIKNYLGADNTVNNKSVIHPEVEIELV
FT                 PGHKPFNFSPRRLAYTEKIELQKLIDDLLSRGIIRESRSPYASPIVLVRKK
FT                 TGELRLCVDYRELNKVTIKDRFPLPLIDDQLDRLQGKKYFSKLDLKSAFHQ
FT                 IRVAEKSVKYTSFITPLGQYEYLRMPFGWCNSPAIFARFINQIFKYLILDS
FT                 KVCVFLDDILIATETIDNHLTILKDVLGLLEDNKLELRLDKCVFLMTSINY
FT                 LGYSVDANGISPCSEHIDAISNYPVPRNSKELHSYLGLISYFRRFVPNFSI
FT                 LASPLYDLIKKGIEFKFNAEHIKCFNNLKKLLVTPPVLSIYSPTAETQLHC
FT                 DASSLGFGSVLMQRQGDDGKFHPVAYFSKRTSDAEKRYHSFELECLCLIYS
FT                 IKRFHIYLFGIPFKIFTDCQSLKLTLDKKDICPRIARWALMLQNYNYQIVH
FT                 RSGKGMGHVDALSRCQNVLVLHENTLEQNLAFQQSQDKAIIKIRDYLEHNE
FT                 HNKFELNNGLVYRKKDKKILFFVPESMENSVIKIYHDEMGHFGVDKVIELV
FT                 TRSYWFPHMKDKIKNYVRNCLKCIVYSPNSGKREGELHNIDKGNVPFSHLH
FT                 IDHYGPLQKTSAGFKYIFEVVCGFTNLSTIPLQNYHSKEAIKHLTTTLDI"
XX
SQ   Sequence 4917 BP; 1659 A; 743 C; 1006 G; 1509 T; 0 other;
     attctcaggt gtggggttca caataaataa actataaata aaagacaaac aatttttggt        60
     gatagtgagg tgaggttaag tggttaagtt aaactgttta aaatattttt tttagtaata       120
     attagacatt tgttttgtta gaatagttct ttagtttatc tttaaaaaaa aaaaaaaaaa       180
     tgagtaaatt aggagattat caggcaatag cggccaacat tagtaatgct gcactttcaa       240
     ctattgtaag tttccataaa tttatttttt ctgaagaagg taataggaat aagaggaaaa       300
     gaattaaaga atttacaggt tttaatttct taaaagattc tgagagctat aaagataaat       360
     ttagttggat taaagaaaat ttgaaaataa gtgaactgta caagatttgt gctttactaa       420
     atttggaatg tgaagatgat ttcgatgata tgactattac attattggat tgcttaatcg       480
     atttagcact actagcacct aaaaaaaagg tggaagaaga ttccgatagt gagcatgaag       540
     aaactgaggc agaaggaaag agttataacg aatatgttga tgcagaggtt acgaccacta       600
     aaaaagagaa ggccaataaa tttgtaatgt cttttcgcga tgtgcaagat tccatacgtt       660
     catttagcgg cgaaaatgac tattccatcg aagcttgggc ctcggatttc gaagaattat       720
     ctgatataat ggaatggagt gacatacaga agctagtttt tgcaaagcgt tctttgacag       780
     gtttagcaaa attgttcgta caaagtgaaa agggattgtg tacttttaat aaattaaaag       840
     ctgctctgtt ggaggagttt tctcaccgta taagtagtgc agatttgcac cgccttctta       900
     gtgagagacg ggctaagaaa aatgaaagtc tgcaacaata ttattttacc atgagagaaa       960
     tggcatccag agggtcagtg gaaccgaagg cgttaatcca gtatattgta gacggaatac      1020
     cagatgcggt caacaataaa attacgttgt atgaggccaa aagtttaaag gaacttaaag      1080
     acaagataat tatttatgaa agcataagag agaaattgga aaataaacag aaaccttccg      1140
     ctctgacttt caaaactgag ggtagcaagg cgtctaagtt tacgcagaac aacaagtgct      1200
     acaactgcaa tggcgagggt caccgagcag cagaatgtcc tcgtcctagg cgggaaaggg      1260
     gctcctgcta cacctgtgga gaaaagggcc acttacaaaa cagttgcccg aacagaaagc      1320
     gctcagcagg aacatccgtt gcagcctcaa cttctaaggt ggtgggcatt gtggcagaaa      1380
     aacctccact gccgccatat tatacttctt tggtgataga tggaagccga gtacagagtg      1440
     aagtagaagc tgttatagat tccggatcat gcatttcatt aattaggaat gacatggtgg      1500
     agtctgacag aattctagtc gccccatcca atattaagca gtacgaaggt ataaataagt      1560
     ccaaattaag cattataggt atattttgta caaaagtatt tttaaattca tgtaatatat      1620
     ttttagatat taatttttat gttgttaata ataatgcaat tccttgtagt tgccttttag      1680
     gtagagactt catctcaaat aaacaaatat gcataacgtt ttctgatacc gttagtattg      1740
     tcgctagtaa acataattta gatattaaag atgaaagtta tgactcgaac gtgcaagctt      1800
     taatgctaat aaataataac gtagtaacga gtgaaaaaga aattattttg aatcagaatc      1860
     taagcataga gaataagctt tctgtagaaa aacttattaa aaattattta ggtgccgata      1920
     ataccgtgaa taacaagtca gtcattcatc cagaggtaga aatcgaatta gtgcctggtc      1980
     acaaaccgtt taatttcagt ccgagaaggt tagcatatac ggagaaaatt gaacttcaaa      2040
     aacttattga tgatctgttg tcgaggggaa ttattcgtga gagcagatcc ccttacgctt      2100
     cgcctattgt acttgttcgg aaaaaaacgg gggagttaag gttatgcgtt gactacagag      2160
     aactaaataa agtcacgatt aaagatagat ttccgctccc attaatcgat gaccaattgg      2220
     ataggctcca aggaaagaaa tatttttcta aactcgatct taagagtgcg tttcatcaga      2280
     ttagggtagc tgaaaagtcc gttaaataca cttcgtttat caccccgcta ggacagtacg      2340
     agtatttgcg aatgccgttt gggtggtgca atagcccagc aattttcgct aggtttatta      2400
     atcaaatatt caaatatctc attctcgatt caaaagtgtg cgtttttctc gatgatattt      2460
     tgattgcgac ggaaacaatt gataaccatt tgacaattct taaagatgtt ttgggtttac      2520
     tggaggataa taagctggaa ttacgtctgg acaagtgtgt gttcctgatg accagtataa      2580
     attaccttgg gtattctgta gatgcaaatg ggatctctcc ttgcagtgaa catattgatg      2640
     cgatatctaa ctatccagtt ccacggaact caaaggagct acatagttac ttggggttga      2700
     ttagttattt tagaaggttc gtacccaatt tttcaatttt agcctctcct ttatatgatc      2760
     ttattaagaa agggatcgaa ttcaaattta atgcagaaca tataaaatgt tttaataatc      2820
     ttaaaaaact tctagtgaca cctcctgttt tgtctattta ttcacccacc gctgagaccc      2880
     agctacattg tgatgccagc tctctaggat ttgggtcggt acttatgcag cgacaaggtg      2940
     acgatgggaa atttcatccc gttgcttatt tcagtaagcg tactagtgat gcggaaaaaa      3000
     ggtatcatag ctttgagcta gaatgtctgt gtttgatata ttctataaaa cgatttcaca      3060
     tttatctttt tggaataccc tttaaaattt ttacagactg tcaaagtttg aaattgacct      3120
     tagataaaaa agacatctgt ccaagaatag ctagatgggc actaatgctg caaaactata      3180
     attatcaaat agttcatagg tctgggaagg gtatgggtca cgttgatgcc ttaagcagat      3240
     gccagaatgt tttagtactg catgagaaca cgttggagca aaatttagct ttccagcagt      3300
     ctcaagataa agctattatc aagataagag attatttaga acacaacgaa cataataagt      3360
     ttgaattaaa taacggctta gtctatagaa agaaagataa aaagatttta tttttcgtgc      3420
     ccgaaagtat ggagaatagt gttattaaga tttatcatga tgaaatggga catttcggtg      3480
     ttgacaaagt aattgagtta gtgacaagat cttactggtt cccacacatg aaagataaaa      3540
     tcaaaaatta cgttaggaat tgccttaaat gtattgtcta ttcacccaac tctggaaagc      3600
     gtgaagggga actgcataat attgataaag ggaatgttcc atttagtcat ctacatatag      3660
     atcattacgg gcccttgcaa aaaacatccg cgggatttaa atacatattc gaagtagttt      3720
     gcgggtttac gaatttatca actataccct tgcaaaacta ccatagtaag gaagcgatta      3780
     aacatttaac gactacttta gacatatagt caaccaatta attatttctg atcgaggaac      3840
     tggctttacc tccaatttgt ttgaggaatt cttagagaag agggggattc aacatatcct      3900
     aatagctact ggtaccccta gagccaatgg gcaaatagag agatttaatc gcgatattac      3960
     gccagttcta gctaaaatta cgcctgagct acctaaatgg gacactgttt tagatcgtgt      4020
     agaattcgcg tttaataata ccttctgcag atctattaaa aatactccta gtagattact      4080
     gtttggtgtg gatcaacaag gggaaatact agacgcgttg aaattttact tagatgaaag      4140
     tgataagaat agaaacttag ttgaaattag ggactccgct gctaaagcaa tcggggatac      4200
     gcaagcacat aataaagaac tctttgatgc acggcataaa gcacctagga ggtataaaga      4260
     aggtgactat gttatgatag ttaatacgga cgtaacaccg ggcattaaca aaaaattatt      4320
     accaaagtat agggggccgt acgaggtcaa gaaagtgtta cccaatgata ggtacgtgat      4380
     agcggacgtg gacggttacc aaattactgg cataccgttt gaaggagtct ttgaatcagg      4440
     tagaatgcga ccatggcaag aaagttcgaa ctctggcatg gattttgatt ttttaactga      4500
     caattagtta atcattttaa taaaatttga cacttatgtg atgattgcca caaattttat      4560
     gagttgtgaa ttagcataga cttctgctat gttcaatatt atgtcatttt gtggttattg      4620
     ttttaatgta ttatttatgt atcattttta attaatgtta ttatacttta gtttatgagt      4680
     actgctcaag aacaagcttg caccgttttt atgattaagt tttaagatta tttgtcaata      4740
     ataatttatg attttctttc atttaaggca aaagaaatgt attttccaat tattttccac      4800
     tatgttagtt aaaggttgat tgatcgggtc gctcaatcgt caggttggac gagatgtagt      4860
     agtaaataat aataatgcca tgtggagcgc tggagtgcgc gctagaaaaa gtcaatt         4917
//
ID   Gypsy-17_RP-LTR repbase;    DNA;    INV; 132 BP.
XX
AC   ACPB02041249;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_RP_;
KW   Gypsy-17_RP-I; Gypsy-17_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-132
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02041249; Positions    1141    1010.
XX
SQ   Sequence 132 BP; 29 A; 12 C; 28 G; 63 T; 0 other;
     tggcgtctta tgtgtcttat ggcgattgct tgcgatcaat gttatgttta tgtttgttgt        60
     aaaagataaa ataaatattg tgttttggtt tttgttattt tgttgttgtt gagctaccat       120
     tttagtacta ca                                                           132
//
ID   Gypsy-17_SI-I repbase;    DNA;    INV; 4594 BP.
XX
AC   AEAQ01023932;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_SI_;
KW   Gypsy-17_SI-LTR; Gypsy-17_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4594
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023932; Positions   10018    5425.
XX
CC   Positions [3280-3765] - Integrase core
CC   'CACC' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1437
FT                 /product="Gypsy-17_SI-I_1p"
FT                 /translation="MRLIPGRLKGHARLWYDTRPRLAITWKEAKKTLMKQF
FT                 RKSAPFSKLFKEAANYESAPGQALGDYCFHKLNKMRKLEIDIPDKYVIDAV
FT                 IGGITDENVARTVRSAQHRDANKLYVYMTTLGNLPARDERHKAAEKNNRQD
FT                 GGSKSAFKNKTHATKNETKTSLSDTTTDDKRADEKPRVECFNCGKPGHIAK
FT                 KCRKPRVECGKCNRLGHTADQCIVKKDVNVVNETHDTPNSYERPIFINGRK
FT                 LRGLIDTGSSSTLLRESIVNKYDMAVSTTSSRVLRGFAGQTTRSNRSALCD
FT                 IRIMNATARVDAIVVPDNYLIRDVIIGRDFLEQEHIVMIKKGNTLTFRQLT
FT                 YGRRKTTLNASST"
FT   CDS           2623..4140
FT                 /product="Gypsy-17_SI-I_2p"
FT                 /translation="MLPLLRVGNNGVLAIRYFRVYLLGITFKVVTDCNALR
FT                 TTFAKRDLLPRVGRWWLEVQEYTFEVEYRAGTKMTHADALSRNPVLLSLEI
FT                 AQVNVTEGDWVLAAQLQDDQLSRIREILLKGRPSHERKHYFDEYVIRDDKV
FT                 YRRLDDKTSAWVVPRDARLQICKLCHDDAGHLGIEKTLEKIKRNYWFSHMR
FT                 CFVTKYVRACLSCAYYKHTPGKKQCKLNIIKKIPTQFHTLHIDHVGPFKTS
FT                 RKHNKFLLVIVDAFTRFVIIEPVKSQKTSYVTKVLTSLIYLYGVSTRIISN
FT                 RGTAFTSQTFSTFCKSYGVKHVLNAVATPRANGQCERYNKTIVQALATTTV
FT                 GWDPRKWDSAAKQVQSALNTAHNKGINTTPMKALIGCETKCATEGLLLSQV
FT                 QDVLHRLDLDEIRADIEAHVNKEQQAQKERYDKTRRDATTYENGNLVMVQI
FT                 TSEPATSSSGKLHPKFKGPFRVRKVLVNDRYEVEDLREGYRRGRTVVAADR
FT                 MKPWITIQGE"
XX
SQ   Sequence 4594 BP; 1473 A; 1041 C; 1121 G; 959 T; 0 other;
     tatcagaagt gggattaacg acacacgtgc ttaaggaccg gtttgattac gacgatacag        60
     tgacaagcaa ttatgggacg ccataagtct cgttacgagt ccgatcgaag tggttcgaat       120
     cagaagagac gccatgactc ttcgtcgtcg aacgaggaga ggcaaagaag agacgtccgt       180
     cgagagaaat caagacacga ggcgggcggc cgacatcgac gatcgcattc gaggggctca       240
     tgcatacacc gaggagatga gttaatgatt ccgatcttcg atccctcaac ggacgactta       300
     gtcattgaaa aatagattga gtacgtagac gatcttgccg aacaatacga ttgggacgac       360
     cactcgatta tgcgcctaat accggggcgt ttgaaaggac acgcaaggtt atggtacgat       420
     acaaggccac ggcttgccat cacgtggaaa gaagccaaaa aaacgttgat gaaacaattt       480
     cgtaagtccg ctccctttag taaacttttt aaggaagcag caaattatga gagcgctccc       540
     ggccaggcgc tcggagacta ttgtttccat aagcttaaca aaatgcgtaa attagaaata       600
     gacatacccg ataaatatgt catagatgcg gtgataggcg ggattacgga tgaaaacgtt       660
     gcaagaacag tacgatccgc acaacaccgt gacgcaaaca aattgtacgt atatatgacg       720
     acgctcggta acctaccggc aagggacgaa agacataaag ctgccgaaaa aaacaaccgg       780
     caagacggag gttcgaagtc cgcgttcaaa aataagacac acgcgacaaa aaacgaaaca       840
     aagacatcgc ttagcgacac tactacggac gataaacggg cggacgaaaa accacgtgtc       900
     gaatgcttca attgcgggaa acccggacat atcgcgaaga aatgcaggaa gccgcgcgtg       960
     gagtgcggga aatgcaatcg attgggacac accgccgacc agtgtatcgt aaagaaagac      1020
     gtgaacgttg tcaacgaaac gcacgataca ccgaattcat acgagcggcc gatattcatt      1080
     aacgggcgta aactccgggg tttaatagac acgggtagca gtagcacact gctgcgagaa      1140
     tctatcgtaa ataaatacga tatggcggtg tcgacgacgt cgagtcgcgt attgagaggt      1200
     tttgcgggac aaacgactag gagcaatagg tcggcactat gcgacatcag aattatgaat      1260
     gcgacggcac gcgtcgacgc catcgtggta cctgacaatt acctcattcg tgatgtcatt      1320
     attggtcgcg attttctcga acaagaacat atcgtaatga ttaagaaagg aaatacgtta      1380
     acgttcaggc aactgacgta cgggcgaagg aagacaacgc taaacgcatc gtcgacgtaa      1440
     atctttctca cgtaaccaaa gatactacga ttacatcgct acgggtaaaa aataagcggg      1500
     gagacgagac gacagtgcat aggtttatta cacgaattta gggactgcat ctcattctcg      1560
     ctggccgatc taggcaagac agacgcggca tcgttaagca ttcgttgcct atcagatgcg      1620
     ccgatcgtat atcgcccata ccgtctaccc gaaagcgaaa aacagatagt acagggcatt      1680
     acccacgacc tcaaaattaa taacgtgata cgcgattcaa actcaccata cgccagcccg      1740
     atattgctag tgaagaaaaa gaacaacgaa taccgcatgt gtatagatta caggaaactc      1800
     aacgcaatca cgataaagga taagtaccct atgccattga tcgaagaaca gatcgataaa      1860
     ttgggaggct gttgatacct cacaggattg gatctagcgt ccggatatta tcaagtgccg      1920
     atggcagagg actcgatcaa gaaaacagct ttcgtgacgc ctcaaggtca ctacgaattt      1980
     ctacgcatgc catttggcct gacaaacgca cccgcagtat tccaacgact gatggacagg      2040
     gtgttaggcg acctgaaaaa ttcgatagcg tttccatatt tggatgacgt gattatacca      2100
     tccaaaaccg tggaggaagg tttgacgcct acgacaagtg ttaaacgcat tccgcaagca      2160
     tcacttgaca ctcagattaa ataaatgttc tttctttgca gactcaattg aatatttagg      2220
     tcgagagatt agtgaacaag gggtccaacc tggtcggcgc aaggtagagg cactgataca      2280
     catggcagca ccccagtctg taaaacaagt tcgccagttc ctgggactag ccagttactt      2340
     caggagattt atcaaaaatt ttgcaacact actggaacct ttgacgagac tcactaagaa      2400
     gaacgtaccc tgggagtgga aggatccaca agaacaggcg tttaacataa tcaaggacaa      2460
     actggctact cgaccagtat tgacgatatt caatcctaac agacccactg aattgtacac      2520
     ggacgcgagc gcaataggtg tgggagcgct tctgttgcag caagtcaatg gtaagatggc      2580
     agcggtggcc tatttcagca agcaaaccac cgccgatcaa cgatgctacc actcctacga      2640
     gttggaaaca atggcgtttt agccataagg tactttcgag tatacctact gggtataacc      2700
     ttcaaggtgg taacagactg caacgcgtta agaacgacat ttgctaaacg ggatctacta      2760
     cctcgagttg ggcgttggtg gctcgaggta caagaatata cattcgaggt cgaatatcga      2820
     gctggaacta agatgacaca cgcagacgcg cttagccgaa accccgtgct gctctcgctg      2880
     gagatagcac aggtaaacgt aacggaggga gactgggtat tggcagcaca attacaggac      2940
     gatcaactgt cacgaattcg ggaaatcctc ctgaagggaa ggccctcaca cgagaggaag      3000
     cattattttg acgaatacgt aattagagac gataaggttt acagaagact tgacgataaa      3060
     acttctgcct gggtagtacc acgagacgcc cgtctacaaa tttgtaaatt gtgtcacgac      3120
     gacgctggac accttgggat tgaaaaaacg ttggaaaaga tcaagcgtaa ctactggttc      3180
     tcgcacatga gatgcttcgt gacaaaatat gtacgggcct gcttaagctg tgcttattat      3240
     aagcacacgc ccggaaagaa gcaatgcaag ctaaacataa tcaagaaaat accgacgcaa      3300
     tttcacaccc tacacatcga tcacgtcggt ccctttaaga cgagccgcaa acacaataaa      3360
     tttctcttgg taatagtcga cgctttcact agattcgtca tcatagaacc tgtaaaaagt      3420
     caaaagacaa gctacgtaac caaagttcta acgagcctta tttatctgta tggggtttcc      3480
     acaagaatca ttagtaatcg agggacggct ttcacatctc aaacgtttag cacattttgt      3540
     aaaagttacg gagttaagca tgtattaaac gcggtagcaa caccgcgtgc taatggacaa      3600
     tgcgaacgat acaataaaac aattgtacag gccctggcta ccacaacagt tggatgggat      3660
     ccacgaaaat gggactcagc tgccaagcag gtacagagtg cactaaacac ggctcacaac      3720
     aaaggcatta atacaacccc gatgaaagca ctcatcgggt gtgaaacgaa gtgcgcaaca      3780
     gagggactgt tgttgtcaca agtgcaggac gttttacatc gcctagattt agatgagata      3840
     cgtgctgaca ttgaagctca tgtcaacaaa gaacaacagg cgcagaaaga acgctacgat      3900
     aagacacgcc gagacgcaac tacatacgaa aatggcaact tggtaatggt acaaattacc      3960
     agcgaaccgg caaccagtag tagtggaaag ctgcatccga aattcaaggg accattccgc      4020
     gtccgaaagg tactcgtcaa cgaccgctac gaagtagagg atttgcggga aggatataga      4080
     cgaggcagaa cggtagttgc tgccgatcga atgaagccgt ggatcacgat ccaaggcgaa      4140
     tagtgagcaa acagcgattc acttcacgaa ctggtatcag agcacagtac ggtgcttatc      4200
     taaaccagtt actacgatct ggtcttagtg ggatacaacg gtactctgct agatcagata      4260
     acacgaactg attttggcca gaccgtgtgc tcgaccgtgt gcgaatcagt tataaacgga      4320
     ctaatttcaa cgggtgcaac aacatctgtt tgaattagtt aagacgacct aactccggcg      4380
     ggcgcgacgg cgtccacctg agctagtaaa ggacgagcta acctcgggca acacgacggt      4440
     acccaaggtt ggctactaga cgtcaacacc gacgagcgtg acaacactta ttcggctcaa      4500
     ccaagacgaa accggttaag gtcattcgac tgaaattgaa gaaaccgcgc aattcatgtc      4560
     tgaggacaga cactgggagc aggaaaggcc gaaa                                  4594
//
ID   Gypsy-17_SI-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   AEAQ01023932;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_SI_;
KW   Gypsy-17_SI-I; Gypsy-17_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023932; Positions    5424    5203.
XX
SQ   Sequence 222 BP; 64 A; 51 C; 60 G; 47 T; 0 other;
     tgtaaggaaa cgccccacga cccttggaac agcgtgtcac cttcgggcgt cagtcccaag        60
     gacgcttgga ggggatgccg ctgcttggct gcgcgaacga atgaaggagc agtgatgaga       120
     gtcgtcgagt gacacacgag agacagagat tcttgtccgc tacagaaaag aaataaatag       180
     ctaacctttc attaaaagta aacgtgcgtt cattttctta ca                          222
//
ID   Gypsy-17_SiCu-I repbase;    DNA;    INV; 7107 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-7107
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5041-5041 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           514..1674
FT                 /product="Gypsy-17_SiCu-I_1p"
FT                 /translation="MSENGSDAGAAGGGGGAPRGADAQADLRNLVRLLGTA
FT                 AGRVPLHEALNILRKYDGKSDVDEYLSKLVQDLTYLKYDYEWALDNLDRLL
FT                 TADAKSWWSSRSVYYLRQVEANRGDKDNIEDIWDAVVLEMKRFFDKKSQRV
FT                 AHRVKNKQTKYSRGQDPQEYVTKKLALLRLIDPDMQGDAVIEQLVKGLPFD
FT                 LREKLSVLDIESPEEFLKLLRRNNECFLEEHMHSRSTPSRSDGGASTAYNH
FT                 PVFTLTGAGPSQSQNQSQPQQQNNHFSRDPRQGINDRDEHGRPICRYCKVA
FT                 GHVKKYCFKLAQAQSNSQNSGQSHNNYSQPNNGGVYSGGQAVGPPPMPPQQ
FT                 XQSQGQRPNFPAPHQQAPGNSFLMQVQHPGNNAPQVAHNNPSGN"
FT   CDS           1662..6524
FT                 /product="Gypsy-17_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SFGKLRSLGIQEPQECTYPVQSLVYYNSNVNSYLPYR
FT                 SYAEAAKINGSAYNHCTGQSLYIAQEKSNPQVVSTNMNNESVVNHSPKEVM
FT                 YSVVGNAPISVDSSKIVYADSSNVDVTRNVHLDIPDEPPPVENPVEISREE
FT                 IDVFKRKISNDAISVNSSGVTEFTFVNSKAYACRYRHKKKRIIRMEVSIQV
FT                 DEQDVMALVDSGATVSAVNKNMFEGIRNSSIVHKISHTNPIELKTSIGQEK
FT                 YYSDEQVEMLFSINDSTIMWKFYVVENLSQLVILGSDWCYAYDVAIHCRDA
FT                 AIEIGRDLSKDSPQERSKPMISPPKTYTNITAAVTTPSSTDATAGTDENDT
FT                 ILNTMHSSYKSQKYNAIFGNLYNLQSVILPPRSFTRVKVFSRLKRDSDIVI
FT                 DPNKDIESKIGISVGKSIVSLKGGHGRTFLLNSTQSPVRLPKFALLGTYEV
FT                 HNDDDIVCDIDKLSKGHDEAALCNLNVSPGHEVFTGTSDEKLMTILNSVRF
FT                 ADRLKDDGKLEAMHALIKKYQNVFTSGSDDLGLCNWVEHRIETGAAAPIKQ
FT                 RAYRVSKVERDEIQRQVDEKLKKGWIEPSDSPWSSPVVLVAKSDGSWRFCC
FT                 DYRKLNAVTRKDSYPLPRIDDVLDRLNGSHYFSSMDLDNAYHQIPVANTDK
FT                 EKTSFITPDGLFSWNVMPMGLTNSGATFQRLIDTVLGRLKWTICLVYIDDL
FT                 VVHSQDFGSHLAHLELVFMALQRAGLKLKPKKCTFGEDHIVFLGHEVSAAG
FT                 VTVKSDARRYVRELPVPKVLKDVKSFVAFCSYYRRFIKDFSKIARPLINLS
FT                 KKDVSFTWSVECQHAFETLVEKLSTAPVLAYPDDDAPTEIHSDACKLGVGS
FT                 SLSQIHNGVERVIGYYSRSLNKHEVNYSITELECLAVITAIEHFRPYIYGR
FT                 EFKVVSDHHSLCWLMNLKDPNARLTRWALRLQPYNFQIVFRSGKRHDDADY
FT                 LSRHPIGKPEDSEKVDSEENLFAIQVRRLCSFSVNDDNIRSLQHKDMRLHN
FT                 IINELERRENDDHHHLDDKLLDFTLIDGLLYKSNKDENGRMWLLVVPPGMR
FT                 KILMDEIHVNSVEHLGLFRTYHAVKSRYYWKGMYTDIRRYLQGCQKCQFYR
FT                 RRNANTPGPLQPVSPPLTPFFRIGIDFQGEHKTTHQFRNKYILVAVCHLTR
FT                 FVEAVPTKDCTAASAISAIERHVIFRHGTPKEILADRGTHFNCREFREFCE
FT                 KYGIRLLFTSPYKPNTNGLCEKQNDTLKGIIAKKVNTKHTDWDRHVNKAVF
FT                 AYNTSVHAITKYSPFFLLYGREAHMTCDNQFPTNLELMSQEDAEFGAKLHL
FT                 KALSEARSRTISFQEKCKIRFDLKHPPKQYGVGDKILLANFARKIGLVAKW
FT                 LVKWLGPFEVVAQTGPINYLVKDLRPNSNNILKNVSVRHMTPYYDEYETEE
FT                 EREYAHDEIPTAVSNLPVTEAEVDISSLSDFIVFHKSDDKQKSTTSVTVVD
FT                 SDSHVTDSTASDDQGENVSDADHSSSDEFHSPCSQVSTKKQSRSSSSPKST
FT                 SVLDTVPSIISSTPSRLPSVVAVSENAPTISAPSTSARVSGRGKSTRSVRG
FT                 HSRVSSTVVNVNENSDSDASVRSSSRIRKPVDRLQYTHENFKMPSVKSKAR
FT                 SKK"
XX
SQ   Sequence 7107 BP; 2227 A; 1293 C; 1542 G; 2023 T; 22 other;
     tttaagatgg cgagtaaact ctcggtttaa cggtacagta aataatataa ttaataatta        60
     ggctagtmat twaattcttc ggtggtagct gcgcgcgttc ttactaccac tctcacaaca       120
     agcgaggggt ctaccagtag tackatttca ttttactagt tattaatttg wttaatttgg       180
     tgtgaagtta tagttaatgc gaaccgaaac ccgctgawgc cgttcacgac gctataagaa       240
     gttaattgtc gacctacaca gaacttcaag acgctcatca acagataaag tctccatata       300
     taatttatta tatttggttt cgtcttttgt tgatttataa aaaaagaaac attacttatt       360
     atgctttaat ttaaattcca gccatcttcc tcatcctctc atcatcatcg ccgttggaca       420
     ttcctcagca actgaccatt acttctggag agtgtgagta aaactatttt tgttttattt       480
     ctggttcagt taggggtatt catatttgct acaatgagtg aaaacggttc agacgcaggt       540
     gctgctggag gaggtggagg tgctccaaga ggagcagacg ctcaagcaga cttgagaaat       600
     cttgttagat tattaggcac agccgccggt cgtgttcctc ttcatgaggc acttaacatc       660
     cttagaaagt atgatggtaa atcagacgtt gacgaatatt tgagtaaatt ggtgcaggac       720
     ctcacatacc tgaaatacga ttatgagtgg gcattagaca atttagatcg gttattaacc       780
     gcagacgcaa aatcatggtg gagtagtaga tcagtttact acttgcgaca ggtagaagct       840
     aatagaggcg ataaggataa cattgaagat atttgggacg ctgtcgttct tgaaatgaaa       900
     agattcttcg ataagaagag tcaacgagtt gcacaccgcg ttaaaaataa gcagacgaaa       960
     tatagtaggg gtcaggaccc gcaggagtat gtaactaaaa agttagcttt acttcggctc      1020
     atwgatcctg acatgcaggg cgacgctgta atagagcagt tagttaaagg tttgccgttc      1080
     gatctcagag agaaattgtc tgttttggac atagagtcgc cagaagaatt tttaaaactg      1140
     ctcagacgaa ataatgagtg ttttcttgaa gagcatatgc atagccgatc caccccaagt      1200
     cgatcagatg gtggcgcatc tactgcttat aatcatcctg tgttcactct cacaggagcg      1260
     gggccgagcc aatcacaaaa tcaatcacaa ccgcaacaac agaacaatca tttcagtcga      1320
     gatccwagac aagggatcaa tgatagagac gagcatggcc gcccaatctg tcgmtactgc      1380
     aaagtmgcwg gtcatgtcaa aaagtattgt ttcaaattag cccaagctca aagtaatagt      1440
     cagaattcag gtcagtcgca taataattat tcacagccga ataatggtgg tgtgtatagt      1500
     ggaggacagg cagtaggccc accgccaatg ccacctcagc aggktcagtc gcaaggccaa      1560
     cggccaaatt tccctgctcc acaccaacag gcgcctggga actcattttt aatgcaagtt      1620
     caacatccag gaaataatgc accacaagtc gctcataata atccttcggg aaactgagaa      1680
     gtttggggat acaggaaccc caagaatgta catatcctgt tcagtcgcta gtttactata      1740
     atagtaatgt aaatagttat ttaccatata gatcatacgc cgaagccgca aaaattaatg      1800
     gcagtgcata taatcattgt actggccagt cgttgtatat agcacaagaa aagtcgaatc      1860
     ctcaggtcgt tagcacaaat atgaataatg aatcagtcgt aaatcatagc ccaaaagaag      1920
     taatgtacag tgttgtaggt aatgctccaa tttcagtcga tagtagtaaa atagtttatg      1980
     cagatagtag taatgtagac gtgacccgga atgttcactt ggacattccc gacgagccgc      2040
     cgccagtcga aaacccagtc gagataagca gagaagaaat tgatgtcttc aaaagaaaga      2100
     tttcaaatga cgctattagt gtaaatagtt caggggtgac ggagttcaca tttgtaaata      2160
     gtaaagcata tgcatgtagg tacaggcata aaaagaaaag aattattaga atggaggttt      2220
     ccattcaggt tgacgaacag gacgttatgg cactagttga cagtggagca acagtgtcag      2280
     cagtgaataa aaatatgttt gagggaatac gaaatagctc tattgttcat aaaattagtc      2340
     atacaaatcc tattgagtta aaaacttcaa ttggtcaaga aaaatattat tcagatgagc      2400
     aagttgaaat gttattttcc attaatgact caacaataat gtggaaattc tatgtagtcg      2460
     agaatctttc acagttggtc attttgggat cagattggtg ttatgcatat gatgtcgcta      2520
     ttcattgtag agacgccgca attgagattg gacgtgattt aagtaaagac tctccacaag      2580
     agaggtcaaa gccaatgatc tcaccgccga agacgtacac taatataact gctgctgtta      2640
     ctactccaag tagtacagat gctacagcag gaaccgacga aaatgatacc attctgaata      2700
     ccatgcacag tagctataag tcacaaaaat ataatgcaat atttggcaat ttgtataatt      2760
     tacagtcggt cattctacca cctcgtagtt tcacacgtgt aaaagttttt agtcgcttaa      2820
     aaagggacag tgacattgtg attgatccga ataaagatat tgagtcgaaa ataggtattt      2880
     ctgtaggcaa gtccattgtc tcgttaaaag gaggtcacgg tagaacattt ttactgaact      2940
     ccacacagag tccagttaga cttccaaaat ttgcattatt aggtacatat gaagtacata      3000
     atgacgacga catcgtgtgc gatattgata agttgtcaaa aggccacgat gaagcagctc      3060
     tgtgtaattt gaatgttagt cctggacatg aagtattcac aggtacttct gacgagaagc      3120
     taatgaccat tttgaatagc gtgagatttg ccgatcgact aaaagatgat gggaagcttg      3180
     aagccatgca tgcactgatt aaaaagtatc aaaatgtttt cacttctggt tcagatgatt      3240
     taggcttatg taattgggta gagcatagaa ttgaaacagg agccgctgct cctattaagc      3300
     aacgtgcata tcgtgtttca aaagtagaga gagacgaaat tcagcgtcag gttgacgaaa      3360
     agctgaaaaa gggatggatt gagccttctg actcaccatg gtcatctcct gtcgtgttag      3420
     tcgcaaagtc ggatgggtca tggcgatttt gctgtgatta cagaaaatta aatgccgtaa      3480
     cacgtaaaga cagctatcca ttacccagga tagatgatgt gctcgacagg ttaaatggtt      3540
     ctcattattt ttcaagtatg gatttagata atgcatatca tcaaatccct gttgctaata      3600
     ctgacaaaga gaagacgagt tttattacgc cagacggtct tttttcttgg aatgtcatgc      3660
     ccatgggttt aacaaatagt ggggctacct tccaacgttt gattgacact gtgttgggta      3720
     gattaaaatg gactatttgc ctagtgtata ttgatgatct ggtagtccat agtcaagatt      3780
     ttggcagtca tttagctcat ttagaattag tatttatggc attacaaagg gcaggtctca      3840
     agttgaaacc taaaaaatgt acatttggag aggatcatat tgtattcctt ggtcatgaag      3900
     tcagtgccgc aggagtaaca gtaaaatcag acgctcgccg ttatgttaga gaacttccag      3960
     tgccgaaggt actaaaagac gtaaaatctt ttgtagcttt ttgttcatac tacagaaggt      4020
     ttattaagga cttttcaaaa atagcacggc cacttattaa tctttctaaa aaagacgttt      4080
     catttacatg gtcagtagaa tgtcaacatg catttgagac gttggtggaa aagttgagca      4140
     ctgctcctgt tctcgcttat ccagacgatg acgcaccaac agaaattcat agcgatgcat      4200
     gcaaattagg cgtcggaagc tctcttagtc aaattcataa tggtgtggag agagtgattg      4260
     gttattactc tcggtcattg aataagcatg aggtaaatta ttccatmacg gaattagaat      4320
     gtctagccgt catcactgca atagaacatt ttcgtcccta catttacggw agagaattta      4380
     aagttgtaag tgatcatcat tcactttgct ggctmatgaa tttaaaggac cctaatgcwm      4440
     gattaactag atgggcattg cgscttcagc cgtacaattt tcagatcgtt tttcgcagtg      4500
     gaaaacgaca tgacgacgcw gattatttga gtcgacatcc tatcggaaag ccggaagact      4560
     ctgaaaaggt agattcagag gaaaatttat ttgccataca agtaagacga ttgtgttcat      4620
     tctcagtaaa tgatgataac attagatctt tgcaacataa agacatgagg cttcataata      4680
     taataaatga gctggaaaga cgagaaaatg atgatcatca tcatttagac gataagttgt      4740
     tggactttac tcttattgac ggtctattgt acaaatccaa caaagacgag aacggcagaa      4800
     tgtggcttct cgtagttcct ccgggaatgc gkaaaatttt aatggacgaa attcatgtwa      4860
     atagtgtaga gcatcttggc ttattcmgga cataccatgc cgttaaatcc agatattatt      4920
     ggaaaggtat gtacactgat atmagacggt acctgcaggg ctgccagaaa tgtcagttct      4980
     ataggagacg aaatgctaat acaccaggcc cattacagcc tgtatctcca ccgctaactc      5040
     cattttttcg tattggaata gacttccaag gcgaacacaa aactacacat cagttcagga      5100
     ataagtatat tttagtcgca gtgtgtcatt tgacgcgttt tgtcgaagca gtacctacaa      5160
     aagactgcac tgccgccagt gccatttcag caattgaaag gcatgtaatt ttcaggcatg      5220
     gtactcctaa agaaatatta gccgacagag gtactcattt taattgccga gagttccgtg      5280
     agttttgtga gaagtacgga attcgtttgt tgtttacttc tccatataag ccaaatacaa      5340
     atggcttatg tgaaaaacaa aatgacacat taaaaggtat cattgccaag aaggtaaata      5400
     caaagcacac tgattgggac agacatgtta ataaagcagt gtttgcatac aacacgtcgg      5460
     ttcatgcaat tactaaatat agcccatttt ttcttttata tggacgtgaa gctcatatga      5520
     cgtgtgacaa tcaatttcca accaacttgg aattgatgag ccaagaagac gctgaatttg      5580
     gagcaaagtt gcacttaaag gctttgagtg aagcacgtag tcgtacaatc tcatttcaag      5640
     aaaaatgtaa gattcgtttt gacctgaagc atcctcctaa acaatatggg gtaggcgata      5700
     aaatcttgtt ggctaatttt gctcgtaaaa ttggtttggt cgcgaaatgg ttagtcaagt      5760
     ggcttggtcc atttgaagta gtagctcaaa ctggtcctat taattattta gttaaggatc      5820
     tacgtccaaa tagtaataat atactaaaga atgtgtctgt tagacatatg acgccatatt      5880
     atgatgaata tgagacggaa gaagaacgtg agtacgctca tgacgagata ccaacagccg      5940
     ttagtaatct tcctgttact gaagctgaag tggatataag tagcttgagt gattttattg      6000
     tttttcataa atcagacgac aaacagaaaa gcaccacttc agtaactgtc gttgatagtg      6060
     acagtcatgt cacggatagt actgcgtctg acgatcaagg tgagaatgta agtgacgctg      6120
     atcattcatc ttcagacgaa tttcattctc cttgtagtca ggttagtacg aaaaaacaaa      6180
     gccgatcatc ttcatcacca aaatcaactt ctgtgctaga tactgttccg tcgataatta      6240
     gtagcacacc aagtcgttta ccttcagtgg tagcagtgag tgagaatgca cccactattt      6300
     ctgctcctag cacatctgca agggtcagtg gtagagggaa aagtaccaga agtgtcagag      6360
     gtcattcacg tgttagttcg acagtcgtaa atgtgaatga aaatagtgat tcagacgcaa      6420
     gtgtacgttc gagcagtcgt ataaggaagc cagttgatcg tctgcagtac actcatgaaa      6480
     attttaagat gccgtcagtc aaatcgaaag ctcgtagcaa aaaatgaatc actagtcgta      6540
     atatttgggt tttgttaatt gatttgttga tcatagatta tgtccacact gagagaaatg      6600
     gaggtggttg aggctgaagt tcttcagccg cagtcaccgc ctgatccagt cattcctgcc      6660
     gtagtcgaaa ccgtagttcc tgacaatccg gtcatttcag cagaaccgca gagcaccgca      6720
     ctcgttgttt tccctgtcgg cgatgaggaa accaactcac ctttgaagag acgtagacca      6780
     acagatacgt tccgccgagt cgttaatggc aagacgctac cacaatgttt caaatgccat      6840
     cgtgtgggac atgtcgctaa attctgtcgt gggactgctc gagttccaga gaagccaact      6900
     ttaaaattat ttaataagtt attgttagat gctaaggcac gccacggcgt gaagactttg      6960
     tattgttgta tctgtcgtca gcctagtggc tctgattgtt tttgttctgt tcattcttaa      7020
     attttgtaaa tatttttttc tatcaattat aaattgaaag ggttataata gcgtcgaggt      7080
     cgtcgctcaa taggaaggag gggtatt                                          7107
//
ID   Gypsy-17_SiCu-LTR repbase;    DNA;    INV; 542 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-542
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5094-5094 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 542 BP; 147 A; 101 C; 98 G; 192 T; 4 other;
     tgtagtgtag atttaggata gttatgagta gtctactatt atatttacat attctgttcg        60
     atactatatg ttaatgaata cgttcgtctc tttgctgaat gtataattta tttgacctag       120
     ttctgtaagc aatgatgcac tatttgtaca tgttctcgtc agtcgacaca acagttccat       180
     ctcgcagtca tgcgagatta taaaaggaag ctcggcsgac gaggagggaa ctctattcta       240
     tttttgatct tgccttgaga agatcatgcc gtwtttctgt cgtttagtcc agcctaattt       300
     aagccagtcg taatattctt tcgggaatat ttaagtcgtt tccgtaataa ttaatagttt       360
     cgtagtaggt ttaggtaggg agagtcgtta aaagtagccg tacattaaat aaaagaccaa       420
     tgtacctaac ataaacttgt ctactgacca ccttatcatt cagtcattca ttgtgttgtg       480
     tttwacttgg ctaccatcaa tcacgctcat catctttgsc ttcctcctaa atccacgcta       540
     ca                                                                      542
//
ID   Gypsy-17_SiOr-I repbase;    DNA;    INV; 4502 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4502
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 353-353 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..1124
FT                 /product="Gypsy-17_SiOr-I_1p"
FT                 /translation="MEQDTPAGSGPAFSTRLQRRFQNQQNTAPPRQSEDSR
FT                 ERATSNPVPTTPSLHQGRIHPTFSFSAPLSGVPAWGICQGGTTNYPPPPLV
FT                 NMAAPEQRTMFCRAEDLSHIITNVVQQLNLNNSNNNFQNSNIVKPKSDFPI
FT                 FDDRSNLHPVDFLKQIESIYRCEGIPVDQFILNGMGHLYFKNNARTWADAF
FT                 LSTFVNFNDFKHHFLSQFWNHSQQLEVRIKLDSNVYRENSGLSFTDHFNKY
FT                 VAMAKHLEPPYTERQLIQIIARHFPPSVSCTLVGTTTFQGVLERLRQAEYY
FT                 FGATKKFCRFSPDESSSTNSQTPYNKKIVNHTNYTYKNATKNVSNIQTPDT
FT                 ILDGENPEN"
FT   CDS           1094..3856
FT                 /product="Gypsy-17_SiOr-I_2p"
FT                 /translation="YNLRRRKSGKLNMLSQSGSPVDSKSRAIHLENYPVDD
FT                 LLDDGNCNFDHLSVSNRSPILELSLYGFSFPALVDTGSEISAISEDVWNRF
FT                 PENLKADIPCFPCTGVRITGAFKSKQKKIQLQSLIIFSCNGNLFKQEFFLV
FT                 NDLIYPIILGIDFLRIYQVTIDLKNNFLACMLNGNIVKLPEKKYFHEYEGY
FT                 EKINLRCIPKYEVLACATLSVEKDTDSNNTIKHFILSQTEQEIFQNLLDKN
FT                 KFVFSNVPGCVKNYVHEIRMIDKNPFFIKPYPIPVAYRVSVNETVKEMERL
FT                 GIIERAATSYISPVAAVIKRDGTIRLCLDARRLNSQMERDHEAPRPIEQIL
FT                 NTLNFDGTTNRKYFSRLDATNGYWQIPLAPESRKYTGFMIDSKTYVFRVLP
FT                 FGLSTASSSFVRMISRVFGPEFDSFLIAYIDDILIISNSFNEHISHLKLVF
FT                 DRLNEVGLTLKLKKCAFFCTELPFLGYILNSEGIKPDPTRIEAITSYPRPK
FT                 NIKQLQRFLGMCNFDRSFCQSFSGFCEPLSRLLRKKIKWEWKDEQEQAFNK
FT                 IKHELSQATILYHPNLSSDWHVSVDASEYGLGAHLFQIVENQQRTVAWASR
FT                 LLLPRETRYHSNEKEVLACIFALTRWRIYLLGRHFTIHTDNRVLTYIKSCR
FT                 LLSPRISRWALALQEYDFSVEFLPGKNNIIADALSRDAFTIPESSDSRCFK
FT                 ILSTIKLPLDFQRKLKSFSKLQREDKKLADIISQLEVDSELQKRFLIHEDT
FT                 LYKRQAADEPCLVCVPKHLQREFVEAFHSMLGHYGVYKTWSALRHEVWWPN
FT                 MHSTIKQVLRCCDSCQKSKSSIMPKPPLNPVIPEGKGDLVALDLYGPLPKS
FT                 RGGVSYILVVLDVFTKYVALYSLKKATCRAVLNKLILDYFPKNGRPDESYQ
FT                 ITGRSLPLNGGGKLLKP"
FT   CDS           3793..4428
FT                 /product="Gypsy-17_SiOr-I_3p"
FT                 /note="integrase."
FT                 /translation="RILSDHGSQFTAKRWRETLEALSIKVIFSSVRHPQAN
FT                 ASERVMRELGRLCRVYCAGHHTRWAYEIQNFSELMNSVVHESTGFSPNELH
FT                 RNITTPNYLPATLVHTPNVGKVSDKNQRLLLAKETLISRAARRKINHPHRP
FT                 YPTFNINDLVLLRANTISSALSAETKKFLLLFEGPFRIKKKVSFDTYVLMD
FT                 DKNVERGTFHVSHLKAYHFLPP"
XX
SQ   Sequence 4502 BP; 1429 A; 822 C; 864 G; 1387 T; 0 other;
     tcttggcgcc caactagcgg gactggtcac aacatcctgg ttttacatcc agaaaaacga        60
     acgtggaaat ggaacaggac actcctgcag gaagtggacc ggcattctca acccggttgc       120
     aaagacggtt ccaaaaccag cagaatacag ctccaccgag acaatcggag gacagcaggg       180
     agagagcaac ttccaatccc gtacctacaa ctccatcttt acatcaaggt aggatacatc       240
     caactttttc gttttctgca ccacttagcg gtgtaccagc atggggaatt tgtcagggag       300
     gcaccacaaa ctatccgccc ccacctttag tcaatatggc agctcctgaa caacgaacta       360
     tgttttgtag agccgaagat ttaagccaca taataacaaa tgtagtccaa cagttaaatt       420
     taaataacag taataataat tttcaaaata gcaatattgt aaaaccaaag tctgattttc       480
     ctatatttga tgatagaagt aatttacatc cggttgattt tttaaaacaa attgaatcta       540
     tttatagatg cgaaggaatt ccagtagatc aatttatttt gaatggaatg ggtcatttat       600
     attttaaaaa taatgctaga acttgggcag atgcatttct atcaacattt gtaaatttta       660
     atgattttaa acatcatttt ttatcacaat tttggaatca cagtcaacag ctggaagttc       720
     gcataaagtt agactctaat gtatatagag aaaatagcgg cttaagtttt acagatcatt       780
     ttaataaata tgtagctatg gcaaaacatt tggagccccc gtacaccgaa agacaactta       840
     ttcagataat tgctcgacac tttcctccta gtgtatcttg caccttggta ggaactacaa       900
     cttttcaagg tgtattggaa cgcttgcgcc aagcagaata ttattttggt gcaactaaaa       960
     aattttgcag attttctcct gatgaaagtt catcgacaaa tagtcagacc ccgtataata      1020
     aaaaaatagt aaatcatacg aattatacat ataaaaacgc gacaaaaaat gtatcaaata      1080
     ttcaaacacc tgatacaatc ttagacggag aaaatccgga aaactaaata tgctatcgca      1140
     atctggctcg cctgtagata gcaaaagtag agccattcat ttagaaaatt atccggtgga      1200
     tgatttgttg gacgatggaa attgtaattt cgatcatctc agtgtatcaa atcgttcgcc      1260
     tattttagaa ttaagtttat atggattttc ctttcctgct ctcgttgata caggtagtga      1320
     aatctcagct atttcggaag atgtatggaa tcgttttccc gagaatttaa aagcagatat      1380
     accatgtttt ccatgcacag gtgtaagaat aacaggagca tttaaaagta aacagaaaaa      1440
     aattcaatta caatctctta taatattttc ttgtaatggc aatctgttta aacaagaatt      1500
     ttttctggtt aacgatctca tatatcctat tattttaggt atagatttct taagaatata      1560
     tcaagttaca attgatttaa agaataattt tttagcttgt atgttgaatg gtaacattgt      1620
     taaactgcct gagaaaaaat attttcatga atacgagggg tatgaaaaaa ttaacttaag      1680
     gtgtataccc aaatatgaag tattagcttg tgctactctt tcggtggaaa aagatactga      1740
     ttcaaataac actatcaagc attttatttt aagtcaaact gagcaagaaa tttttcaaaa      1800
     tttattagac aaaaataagt ttgttttttc taatgtgcca ggttgtgtaa aaaattacgt      1860
     acatgaaatt cgaatgattg ataaaaatcc cttttttatt aaaccatacc ctataccagt      1920
     tgcatataga gtgtcggtaa atgaaacggt taaagaaatg gagcgtctcg gtattatcga      1980
     acgggccgct acttcgtata tctcccccgt agctgcagta ataaaaagag atggtacgat      2040
     acgactgtgt ctagatgcgc gacgcttgaa tagtcaaatg gagagggatc atgaggcgcc      2100
     gcgaccgata gagcaaattt tgaatacact taattttgat ggaactacga atcgtaaata      2160
     tttttcgcgt ttagatgcga cgaacggcta ctggcaaata ccactcgcac cggagtcaag      2220
     gaaatatacc ggttttatga ttgactctaa aacctacgtt tttcgcgttc ttcccttcgg      2280
     tctctctact gcgtcatctt cgtttgtgcg tatgattagt cgagtatttg gaccggagtt      2340
     cgattcattt ttaattgcct atattgatga cattttgata atatctaatt catttaatga      2400
     acatattagc catttaaaac ttgtttttga ccggttaaat gaagtaggat taacgctgaa      2460
     gcttaaaaaa tgtgcatttt tttgtacgga attacccttt ctgggatata ttttaaatag      2520
     cgaaggaatt aaaccggatc caacgcgaat agaggcaata accagctatc cgcgtcctaa      2580
     aaatattaag cagttacaga gatttttagg gatgtgcaat tttgatagat cgttttgcca      2640
     atctttttcg ggtttttgtg aacctttgtc gagactttta agaaaaaaga taaaatggga      2700
     gtggaaagac gaacaagaac aagcgtttaa caaaataaag catgaattat ctcaagctac      2760
     aattctgtat cacccaaact tatcatccga ctggcatgtt agtgttgatg ctagcgaata      2820
     cggactgggc gcgcatcttt ttcaaattgt tgaaaatcaa caacgcacgg ttgcgtgggc      2880
     tagtcgttta ttattgccga gagagactcg ttatcatagt aatgaaaaag aagtactagc      2940
     ctgtattttt gctcttactc gatggcgcat ttatctttta ggtcgtcact ttacgataca      3000
     taccgacaat agagttctga cttatataaa atcttgtcgt cttctatcgc cacgaatttc      3060
     tagatgggca cttgcgctgc aagaatatga tttttccgtc gagtttcttc caggaaagaa      3120
     taatataatt gccgacgcgt tgtctcgcga tgcctttact atcccggagt catctgactc      3180
     gagatgtttt aaaatattat ctactatcaa gttacctctt gattttcagc gcaaactaaa      3240
     gtctttttct aagctgcaac gcgaggataa aaaattagcg gatattattt cacagttaga      3300
     agtagattcg gaattgcaga aacgttttct gatccatgaa gatacgttat ataagcgtca      3360
     agcagcggac gaaccatgct tagtatgtgt ccctaaacat ttacagcggg aatttgttga      3420
     agcttttcat agcatgttgg gtcattatgg agtgtacaag acttggtcgg cactgagaca      3480
     cgaggtttgg tggccaaaca tgcattctac tataaagcag gtactacgtt gttgcgactc      3540
     ttgtcaaaaa tcaaaatcgt ccatcatgcc aaaaccaccg cttaatcctg tcattcctga      3600
     aggaaaggga gatctcgtcg cgttagattt gtatgggcca ttacctaaaa gtcgtggagg      3660
     tgtatcgtat attctcgtag tgttggatgt atttacgaaa tacgttgctc tttattcact      3720
     taaaaaggct acttgtcgtg cagttcttaa taaattgatt ctagactatt ttcccaagaa      3780
     cgggcgccct gacgaatctt atcagatcac gggtcgcagt ttaccgctaa acggtggcgg      3840
     gaaactcttg aagccctaag catcaaagtt atttttagtt ctgttcgtca tccgcaagca      3900
     aatgcatccg agagagttat gagagaactc ggccgtcttt gtcgtgtcta ctgtgcggga      3960
     catcatacgc gctgggcgta tgaaatacaa aatttttcgg aactaatgaa ctccgtagta      4020
     cacgaatcaa cagggttttc tcccaacgag cttcatcgaa atattacgac tccaaattat      4080
     ttgccagcta ctttggtaca tactcctaat gtgggtaaag tgtctgataa aaatcaaaga      4140
     cttttattag ccaaagaaac tcttataagt cgagctgcta gaaggaagat aaatcaccct      4200
     catcgaccat atcctacatt taatatcaac gatttggtct tgttaagagc caatacgatt      4260
     tcttcagcgt taagcgcgga aactaaaaag tttttattgc tatttgaagg tccatttagg      4320
     ataaaaaaga aagtaagttt tgatacgtat gttcttatgg atgacaaaaa cgtggaacga      4380
     ggtacttttc acgtttctca tttgaaggca tatcattttc taccgcccta actttcatcg      4440
     aataagcttt atgcgagctt gcagtgttgt taacaacgac ttccagttcg cagggaggca      4500
     ga                                                                     4502
//
ID   Gypsy-17_SiOr-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-454
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 386-386 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 454 BP; 150 A; 65 C; 68 G; 171 T; 0 other;
     tgtagcataa ttaataaaat atgcgggaaa tattagatat aatgcattaa tttaatataa        60
     tagtaaaaca ggtttctgga tcttaacatt aggtttctta taaactaata tatagatggc       120
     cctggtagtt tcaatttata aatttcgctt ttttgcaata atggaattcg ggtgatcgcc       180
     attttactta taacgctaca agtgctaaca gcctttggtt ttggatttat tatcaaatat       240
     attagattct tattattttg acgtataaac ctggtgttag gtaagaaatt gatttacaac       300
     ccttaactgg gttccctatt aattatagtt tattttagaa ttttgttaga acttttataa       360
     accaccccta caaccatcag cgtggaaaat aaaaaaagct agtatttcct gcagcaattt       420
     gttttattga cagtcttcag aaccttacgt taca                                   454
//
ID   Gypsy-17_SpEx-I repbase;    DNA;    INV; 4054 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4054
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4086-4086 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..922
FT                 /product="Gypsy-17_SpEx-I_1p"
FT                 /translation="MSVEKMPELSSVSTSLRIPPIWRDKIRLWFAQFEAIM
FT                 SPQKKGDQAMFELVVGHLERQDLDEISDIILHPPERDRYEALKNRLLQVYE
FT                 ESEQRQVQRLLSEMELGDLKPSQLLRRMKNLAADNISDAALRIMWTNHLPQ
FT                 SVRAVLAVSDNIAKYSDIHDLAMMADKILEQTQPHGTVAAVTENPTFPRVH
FT                 ASIEDKIDMLTREIAELKAAQSSHRCNHQSRRPQRSRSSSRYRPHPRQRDN
FT                 TPRRTETGICYYHRKFGKEAQRCTRPCNFQNNSPHPEN"
FT   CDS           805..4053
FT                 /product="Gypsy-17_SpEx-I_2p"
FT                 /translation="QHSTPHRNWYLLLPPQVREGGTAMHTSMQFPEQQPPP
FT                 GKLTAALDEAGTGATTTSYRLFITDRNSRLSFLIDTGANVSVIPRRKGVKV
FT                 TPTDFCLYAANNTVIPTYGEKTLQLDLNLRRPYSWKFIVAEVSKPIIGADF
FT                 LRHHQLLVDIAGRCLIDKVTNLTVQAPISYSTEPTVRSIDVEQPYHQILSQ
FT                 YPDILRPSCMKTTPKHRVEHYIETTGPPVHSKTRPLPPHRYLAVKKEFEIM
FT                 MQQGLCRPSKSPWSSPLHVVPKKNGDIRVCGDYRRLNDVTKPDRYPVPRLK
FT                 DFTYLLHGKKIFTTLDLNRAYQQLPVYEPDIEKTAITTPFGLFEFPRMCPG
FT                 LKNAGQTFQRFIHQVLNNLDFAFPFIDDVIIASENKARHIEDLQEVLRRLN
FT                 DYGITINPSKCVFGQENVKFLGYQVSSEGIKPPLEKVSAISAYPKPETIAD
FT                 LRRFLGMVNFYRDSIHNAAHIQAPLNAFLHNSKKRDKTKIEWNNEALQAFE
FT                 LCKASIQNAALLAHPSPSPTQPISLMCDASNTCAGAVLQQYINNKWVPLGY
FT                 FSKKFSEAQQRYSTFDRELLSIYMAIKHFRKMFEGRELIVYTDHKPLTYAI
FT                 RKPPSDNDTQRRTRQLLFISEFTTDLRHVSGANNIVADALSRVETIDLPSP
FT                 INYDELSQAQEKDSNIPNLIKQTNIQLKKISIPTSNKFIYCEVSTPHVRPY
FT                 LPIDYRRIAFNAVHNTSHPGIRTTRKLMQQRYFWPSMNTDIGEWAKTCIEC
FT                 QQSKVHRHTHSDVTSFPPSERFEHIHIDIVGPLPTSSSGHRYLLTMIDRCT
FT                 RWAEAVPLREISAEVVARKLYEAWITRFGCPIKITTDQGRQFESSLFKNLA
FT                 QLLGVERTRTTAYHPQSNGIVERWHRTLKAALMTRLADNNKWLIELPTVLL
FT                 GLRAATRTDTNTSAAQLTYGQAIRLPGDFISPSPTNTKMDNDYVADLHRVI
FT                 TSLTPAYQSHTNRLSIFVHKDLQTCSHVFVRDDAVRKPLQRPYKGPYLVTY
FT                 RNDKYFTIETPRGTTNVSIERLKPAYVINNDNSEHCATPPATTQDQPSEPP
FT                 SSDSDVRRTRTGRIIKTPVRFARGGV"
XX
SQ   Sequence 4054 BP; 1253 A; 1152 C; 807 G; 842 T; 0 other;
     gtggtgaccc cgacgtgata ttatcgacgc tatcctgccg acggatccct gcaagattaa        60
     gaatcgccta atcaagctcg tcgtaatgtc ggtcgaaaaa atgccggaac tttcgagcgt       120
     ttcgacgtcg ctgcgcatcc cacccatatg gcgcgacaaa atacgcctat ggtttgctca       180
     gtttgaagca ataatgtcgc cacagaagaa gggcgaccaa gccatgttcg agcttgtcgt       240
     cggccacctg gaacgacaag acctcgacga aatcagcgac attatccttc acccacccga       300
     gagagatcgc tacgaagctc tgaaaaacag actactccag gtctacgaag aatcagagca       360
     acgtcaagta caacggcttc tctcagagat ggagctaggc gatctaaaac catctcagtt       420
     acttcgccga atgaaaaatc tcgccgcgga taacatatct gacgctgcac ttcgcatcat       480
     gtggactaat cacctgccac agtccgtacg tgcagtcctc gctgtcagcg ataacatcgc       540
     gaagtactca gatatccacg atctggcgat gatggcagac aagatcctcg agcagacgca       600
     accccatggc acagtcgctg ctgtcactga aaacccgaca ttcccccgtg tacatgcaag       660
     tatcgaagac aagatcgata tgctgacgag ggaaatcgct gaacttaaag cagcgcagtc       720
     aagtcatcgt tgcaaccatc aatcaagacg accccaaagg tcacgatcgt cgagccgata       780
     tcgtccccac cccagacagc gtgacaacac tccacgccgc acagaaactg gtatttgtta       840
     ttaccaccgc aagttcggga aggaggcaca gcgatgcaca cgtccatgca atttccagaa       900
     caacagcccc cacccggaaa actaacagct gcgttggatg aggcgggaac cggcgcaaca       960
     actacgtcat accgcctatt tataacagac agaaactcac gtctgtcatt tttaattgat      1020
     actggcgcta acgtctccgt cattcctaga cgaaagggcg tgaaggtaac accaaccgac      1080
     ttttgtttgt acgctgcaaa caacacagtc atccctacct acggtgagaa gacactccag      1140
     ctagacctaa acctacgacg accatacagt tggaaattca tcgttgctga agtcagtaag      1200
     ccaatcatcg gcgccgactt cctacgccac caccaactac tcgtcgacat agccggtcga      1260
     tgtcttatcg acaaagtcac caacctcacc gtccaagccc caatctcata ttccaccgag      1320
     ccaaccgtaa gaagtataga cgtcgaacag ccgtatcatc aaatactaag tcaataccca      1380
     gacatcctaa gaccatcatg catgaagact actccgaagc accgcgtgga acattacatt      1440
     gaaaccaccg gtccacctgt acatagtaaa acgcggccac tacctccaca cagataccta      1500
     gccgtgaaga aagaattcga aattatgatg caacagggat tatgccgtcc aagcaaaagt      1560
     ccctggtcca gcccactaca cgtcgtacca aagaagaatg gtgacatacg tgtatgcggt      1620
     gattaccgac gacttaatga cgtcactaag cccgaccgct atccagtacc tcgccttaaa      1680
     gatttcacat acctactcca cggcaagaag atttttacca ctctcgattt gaatcgtgca      1740
     tatcaacagt tacctgtcta cgaacctgac atagagaaaa cagccatcac aaccccgttt      1800
     ggtttgtttg agtttccccg aatgtgtccc ggcttaaaaa acgcgggaca aacattccaa      1860
     cggttcatac accaagtact aaacaattta gacttcgcat ttccgtttat tgatgacgta      1920
     atcatcgcat cagagaacaa agcacgtcac atcgaagacc tacaagaagt gcttcgaaga      1980
     ttaaatgatt acggtatcac catcaaccca tctaaatgtg tcttcggcca agaaaacgta      2040
     aagttcctgg gatatcaagt gtcgagcgaa ggaatcaaac ctccacttga aaaggtcagc      2100
     gctatctctg cttaccccaa accggaaaca atagcggacc tacgtcgttt tcttggcatg      2160
     gtaaactttt accgtgacag catacataac gcagcccata tacaagcacc gctaaacgca      2220
     tttctacata actcaaagaa acgcgacaaa accaaaatcg aatggaataa cgaagcacta      2280
     caagcattcg agttgtgtaa agctagcatt caaaacgcag ctttactcgc tcacccatcc      2340
     ccgtcaccaa ctcaacctat ttcactcatg tgtgacgctt caaacacctg tgcaggagct      2400
     gtcctacaac aatacattaa caacaagtgg gttccccttg gctacttttc aaagaaattc      2460
     tctgaagctc aacaacgata tagtacgttt gaccgcgaat tactatccat atacatggcg      2520
     atcaaacact tcagaaaaat gttcgaagga agagaactca ttgtatacac ggatcacaag      2580
     ccgctcacct atgcaatacg taagccgccg tcggacaacg acacacaacg acgcactcgt      2640
     cagctattat tcattagtga gtttacaacc gacctacgtc acgtgagcgg cgcgaacaac      2700
     atagtcgccg acgcactatc acgcgtcgaa actatcgact taccatcccc aattaactac      2760
     gacgaactat cccaagcaca agaaaaggac agcaatattc ccaacttaat aaaacaaaca      2820
     aacattcagc ttaagaaaat atccatacct acttcaaaca agtttattta ctgcgaagta      2880
     tcgacgcctc acgttcgccc gtacttaccg attgactatc gtcgcatcgc attcaacgcc      2940
     gtgcacaata caagtcatcc tggcatacgt actacacgca agctaatgca acaacgatac      3000
     ttctggccgt ctatgaatac cgacattggc gagtgggcaa agacatgcat cgagtgtcaa      3060
     caatcaaagg tacatcgaca tacgcacagt gacgtcacat cattcccacc tagcgagcga      3120
     tttgaacaca tacacattga tatcgttgga ccgctgccta catcctcgag cggacatcga      3180
     tacctactca ctatgatcga ccgctgcacc cgctgggctg aagccgttcc cctgcgagag      3240
     atatcagccg aagtcgtcgc aagaaagctg tacgaagcat ggataacgcg ttttggttgt      3300
     cctatcaaaa ttacaaccga tcaaggacga cagtttgaga gcagcttatt taaaaatctc      3360
     gctcagctac tgggagtgga acgaactcgt actactgcct atcacccgca gagtaacggg      3420
     atcgtagaac gctggcatcg tacattaaaa gccgcgctca tgactcgact agccgacaac      3480
     aacaaatggt tgatcgagtt acctaccgtg ctactaggac tacgagccgc cacgcgcacc      3540
     gacactaaca ctagcgccgc acaacttacc tacggacaag caatacgatt gccaggcgat      3600
     tttatatcgc cgtcgcctac caacacgaag atggataacg actacgtagc cgacttgcat      3660
     cgtgttatca caagcttaac gcccgcttat cagtcgcaca ctaacagact gagcatcttc      3720
     gtgcataaag acctgcaaac atgcagccac gtattcgtac gtgacgacgc agttcgcaaa      3780
     ccactgcaac gtccatacaa aggcccgtac ctagttacct acagaaacga caagtacttt      3840
     acaatagaaa cacctagagg taccaccaac gtgtcaatcg agcgtctaaa gccggcctac      3900
     gtcattaaca acgataactc agaacactgt gcaactccac cagcgactac ccaggatcaa      3960
     cctagtgaac ctccgtcgag cgacagcgat gtacgaagaa cgcgaacagg cagaataatc      4020
     aagaccccag tacgcttcgc tcggggggga gtac                                  4054
//
ID   Gypsy-17_SpEx-LTR repbase;    DNA;    INV; 817 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-817
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4146-4146 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 817 BP; 228 A; 240 C; 170 G; 179 T; 0 other;
     tgtagccgca cctcacgact acatacctac caataccata ctcaaaacca tgtaccaatt        60
     taccttatat atttacctta ccgacaccac cgaatacctt accatacctc aaaaccagat       120
     accatatacc ttccacatac caacgttttt agactttccg ttatcaacag aaacatgata       180
     acaattgtct tgaaaaagac agtttaaaac gttttagact gcgttaacat gaaacgataa       240
     atattgtctt gaaaaagaca gtaaacgttt tagactctgc cagaaacaat tatttcggcc       300
     cggcgtatta cgccgtgccg agcgtagtcg cttcgaaaga agcggtttgt catttgcgag       360
     catcgctagc ggagccggag gcggagcacc tgcacccgcc gcgtcttcaa tcttcacaca       420
     gtctgcactc gacgacggcc cagcggagcc ggaggcggag cacctgcacc cgccgcgtct       480
     tcaatcttca cacagtctgc actcgacgac ggcgcgcggc gaaatgtcgc gctctcggcg       540
     cgcgaccctt ttatatgcaa acgagagatc gcggcggcgc ggcgccgcga ccaaagcggc       600
     ggccctcgcc ccgcgcggcc cgcgctcgcc ggcgcgtcgc cattggtcaa cacataccta       660
     acggcgcgcg atatggtttt aatgtacaat tgtaaatata gatataagta gcaacaatta       720
     gcgaaataaa tcattccgaa acacgcatct caacgagtat catttacaag aagaaccttc       780
     tcgtaggaca actaggctct cctacctagt tcctaca                                817
//
ID   Gypsy-17_SpFr-I repbase;    DNA;    INV; 5278 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5278
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1853-1853 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..4904
FT                 /product="Gypsy-17_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPRSIRSRSSSEETSPRRTHKKHGRSRRHRRVSEQRR
FT                 SRSRSRESSVKQALSAIVSRLNAIEESNMSRSHTPVPPNRAITPQRDNFDN
FT                 EVPNAAKLLADAIATIGSKPHNYHVSNFDPAIHDFEVWCNEVERARLVNRW
FT                 SDLECLSRVANCLKGDARTWLNEWTTNDRSWSNFSKEFTSLCPRKQDFANI
FT                 LFDVMNTTSDKYPTYAEYARRSLLRLRIVKGLSDDLMVQIIIRGVNDAQVR
FT                 AAAANANLTLETIVSFLAIYVKPGRTKDNLRGSTSVNKRPNDRPATKCYTC
FT                 GQAGHRSFNCTKKRKYSDNANTKLICSFCKKNGHKESECFTKARAEARTEA
FT                 QTNNQKRVNLCRQVSNASRNNDISTAVIQGIPVDILIDSGALNVSLISSDV
FT                 VKHFSCVRKPTHCVIKGISYDGIIAREYVTLTVEFSNIALEIDFIVVPSSC
FT                 MNMPIIVGTDVLNRDGVTFVRTKQGQYLTHSTNQRLFINSAELDCLSDIST
FT                 PLQGEDLNSLLRVIRGFLSFFISGTAVTTVKTGKMQINLNSDVPVAYHPYR
FT                 LSYQEKLKVREIVKDLLDKSIIRESNSEYASPIILVKKKDGTDRMCVDFRA
FT                 LNRITVKDRYPLPLIEDHIDRLGGSKFFSGLDMASGFHQIPIDEGSIHKTG
FT                 FVTPEGHYEYLKMPFGLCNAPTVYQRIINKTLRSFIESGNVLVYIDDVLLM
FT                 SMTVSDGIKLLHEVLETLTQAGFSINLRKCSFLTTKVEYLGRIISHGQVRP
FT                 NPNKIEALTNTPVPSNVRQVRQFLGLAGYFRRYIEGYATKTASISRLTKKN
FT                 VKFEWGPEQEQVRLYLIEQLTNEPILAIFDPKLTTELHTDASSAGYGAVLM
FT                 QIHSGGNKRVVAYFSKVTQGAESRYHSYELETLAVVKALQHFRHYLIGINF
FT                 KIVTDCNALKATERKKDLLPRVARWWIYLQDFNFTIEYRKGVMMSHADYLS
FT                 RNPPVAQVNHIDRPLNWAQMAQAADDETKDLIQKLRDGQLDSRRYVTQNDL
FT                 LYYRYSPVGEESRLLCYVPKGHRLSLLRVFHDEHEHIGADKTLDLILKHFW
FT                 FPGLKNFVSKYTSHCLVCISKKRVPRAPHQPITSWVKPEVPFNTLHVDALG
FT                 PLPESNGYKFVFVLVDAFTKFCLLYPMYRQDTNELKRVFNSAISLFGVPKL
FT                 IICDRGRMFEAAGFTSWISELGCDIHHITPEMHHANGQAERYVRTVLNLIR
FT                 VESRNKNVIWSDSLWKIQLVLNITKQKTTQMSALNLLIGTDATTPVIRALV
FT                 RDVAIENANPNREAWREICRNRAKVLLDRNQNKQDSHTNRQRHPPKVFKTD
FT                 DLVFVIKYSQSTGKLDSGMRGPYRVIKVLPSNRYELKLLGGARGKTTQAAA
FT                 QYMVPWKGEWCPESCTAFFESKCMLTTFMLQICCGFVVDEYVREMDSCCRV
FT                 DRVLKRWCNPGWLSGRTSIGLNVLQTHMLDMCIGHIGCLADTFLTCIGLNV
FT                 LQTHMLDMCIGHIGCLADTFLTCIGLNVLQTHMLDMCIGHIGCLADTFLTC
FT                 IGLNVLQTHMLDMCIGHIGCLADTFLTCIGLNVLQTHMLDMCIGHIGCLAD
FT                 TFLTCIGLNVLQTHMLDMCIGHIGCLADTFLTCIGLNVLQTHMLNMCMGT"
XX
SQ   Sequence 5278 BP; 1496 A; 1086 C; 1238 G; 1458 T; 0 other;
     tcagaagtgg gattggcccg tgctcatttt caaacaaccg ttaattttga ataatgccgc        60
     gatctattcg ttcgcgtagc agttcagagg agacgtcacc tcgtagaacg cataagaagc       120
     atggcagatc gcgccgacac cgtcgtgttt ctgagcagcg tcgctctcgg tcccgtagtc       180
     gcgaaagctc ggtaaaacaa gcgttaagcg caattgtgtc gcgattgaac gcaatagagg       240
     agagtaacat gagtaggtcg catacaccag tgccaccaaa tcgtgccatc acacctcaac       300
     gtgataactt tgataacgag gtgccaaacg cagcaaagct gctggccgac gcaatagcta       360
     ctatcggaag taagccacat aattaccatg tgtcaaactt cgatcctgct attcacgatt       420
     ttgaggtgtg gtgtaacgag gtggagcgtg ccaggttagt gaatcgttgg tctgatttag       480
     aatgcttatc gcgggtcgct aactgtctta aaggggacgc tagaacgtgg ctgaatgagt       540
     ggacgacgaa tgatcgttca tggtcaaatt tttcgaagga gttcacgtcc ctctgcccgc       600
     gtaaacaaga ttttgccaac atactctttg atgtcatgaa tacaacgtcc gataaatatc       660
     ccacgtacgc ggaatatgct cgacgttcct tattgcgact tcgtatcgtt aagggcctaa       720
     gtgatgattt aatggtccaa ataatcatac gtggtgttaa tgatgctcag gtacgcgcgg       780
     ctgccgcaaa cgcgaatctt acactcgaaa ctatagtttc atttttagct atttatgtca       840
     agccagggcg gaccaaagac aatcttcgcg ggtccacttc agtcaataag cgtcctaatg       900
     atcgacccgc cactaaatgt tacacgtgcg gccaggctgg acatagaagc tttaactgta       960
     ccaaaaaacg taaatattcc gataacgcta atacaaaatt gatatgttcg ttttgtaaaa      1020
     agaatggaca caaagagagc gaatgtttta ctaaggcacg agctgaggcg cgaactgagg      1080
     cacaaactaa caaccagaag agggttaacc tttgcaggca ggtatctaac gcttcccgta      1140
     ataacgatat tagtactgct gtcatacagg gtataccggt cgatattcta atagatagcg      1200
     gtgcgcttaa cgtctccctt atatcatctg acgtcgtaaa acacttttct tgtgttcgaa      1260
     agccaactca ctgcgttatt aaaggaatta gttatgacgg aattattgct cgtgaatatg      1320
     tcacccttac tgtcgagttc agcaatattg ccctcgaaat agattttatt gtagtgcctt      1380
     catcttgtat gaatatgcct attattgttg gtactgatgt tttgaatagg gatggagtga      1440
     cctttgttag aacaaaacaa ggacagtact tgactcactc tactaatcag aggctgttca      1500
     ttaactctgc cgaactcgac tgtttgagtg atataagtac acctttgcaa ggcgaagacc      1560
     taaactcttt attacgcgtt attcgcggtt tcttgtcctt tttcatatct ggcacagccg      1620
     ttacgacggt caaaacggga aagatgcaaa tcaatttaaa tagcgacgtt cccgtagcct      1680
     atcacccata taggttatcc tatcaggaaa aattaaaagt ccgggagatc gtgaaagatt      1740
     tattagataa gtctataatt agggagtcca attccgagta tgcgagtcct atcatcttag      1800
     tgaagaagaa ggatggtacc gataggatgt gtgtggactt tcgagcactc aatcggatca      1860
     cggtaaagga tagataccca cttcctctca tagaggatca catagaccga ttgggaggct      1920
     cgaaattctt cagcggactt gacatggcgt cgggcttcca ccaaatccct atcgatgagg      1980
     gttctataca taaaacagga tttgtaacac cagaggggca ttacgaatac ttaaaaatgc      2040
     cattcgggtt atgtaatgcc ccaacggtat accaacgcat tatcaataaa acacttcgaa      2100
     gtttcatcga atctggtaat gtgctcgtgt atattgacga cgtgctcctt atgagcatga      2160
     cggtttctga tggaattaaa cttttacatg aagttttaga aactttaaca caagccggat      2220
     tttcgattaa tcttcgaaag tgctcatttc tcacgaccaa ggtggaatat ttggggcgta      2280
     taataagcca tggtcaggtt aggccgaacc ctaataagat cgaagctctg actaatactc      2340
     ctgtacccag taacgttaga caagttaggc aatttttagg tctagcagga tactttaggc      2400
     gttacatcga agggtatgcc acaaaaactg caagtatttc acggttaacg aaaaagaacg      2460
     ttaaatttga atggggccct gaacaagaac aggtccgcct ataccttatt gaacagttga      2520
     ctaacgaacc gatacttgca atttttgatc ctaagttgac cacggaactg cacactgacg      2580
     ctagtagtgc agggtatggg gccgtactta tgcaaataca tagcggtggt aataagcgag      2640
     tagtggccta ttttagcaag gtcacccagg gcgctgaaag caggtaccac tcgtacgagc      2700
     tggagacgct ggcggtagtc aaggcgttgc agcattttag acattaccta attggcataa      2760
     actttaagat tgtaaccgac tgcaatgccc tgaaagccac tgagcgtaaa aaagacctgc      2820
     ttccacgcgt ggcgcgctgg tggatttatt tgcaggactt caatttcaca attgaatacc      2880
     gaaaaggagt catgatgtct catgctgact acctcagtag aaatccacca gttgcgcagg      2940
     tgaaccacat cgatagaccg ttaaactggg cccaaatggc gcaggctgcc gatgatgaaa      3000
     caaaggacct catacaaaaa ttaagagatg gtcagttaga ttcacggcgc tatgttaccc      3060
     aaaacgattt actttattat cgttactcgc cagtcggcga ggagtctaga ttgctgtgtt      3120
     atgtccccaa aggacacaga cttagtttat tgcgagtgtt tcatgacgag catgagcaca      3180
     ttggtgccga caaaacatta gacctcatac taaagcattt ctggttccca ggtctgaaaa      3240
     actttgtttc caagtatacc tcacattgcc ttgtttgtat ctcaaaaaaa cgagtaccta      3300
     gggcaccgca ccaacctatt acgtcatggg taaaacctga agttcctttt aacactctgc      3360
     atgtcgacgc attaggcccc ttaccggaat caaacggtta caaatttgtt tttgtgttag      3420
     tagatgcttt cactaaattt tgtttacttt atcccatgta ccggcaagac actaacgaac      3480
     ttaaacgtgt tttcaatagt gctatttctt tgttcggagt tcctaaatta attatttgcg      3540
     atcggggtcg tatgtttgaa gcagctggct tcaccagttg gatatcagaa ttaggttgtg      3600
     acattcatca cataactccc gaaatgcatc acgcaaacgg gcaggcagag cgatatgtgc      3660
     gaactgtatt aaatttaatt cgtgtagaaa gccgtaataa aaacgtaatt tggtcagatt      3720
     cactttggaa aattcagctt gtattaaata ttactaaaca aaaaacaaca caaatgtcag      3780
     cattaaactt actgatcggt actgatgcga ccactcccgt tattcgtgcg ctggtccgcg      3840
     acgtggcaat cgaaaacgcg aaccctaacc gtgaagcatg gagggaaatc tgcaggaacc      3900
     gggcgaaggt tttgcttgac aggaaccaaa ataaacaaga ttcccacacc aatcgccaac      3960
     gacaccctcc taaagttttc aagactgacg acctagtgtt tgttattaaa tactcgcagt      4020
     caacgggtaa actggactct ggaatgcgag gtccctaccg agttataaag gtcctcccaa      4080
     gcaaccgcta tgagctgaag ctgttgggtg gagccagagg caaaacgact caggctgcag      4140
     cacaatatat ggtgccttgg aaaggggagt ggtgtcccga gagttgtaca gctttctttg      4200
     aaagtaagtg tatgttaact acctttatgt tgcagatatg ttgtggattc gttgtggatg      4260
     agtatgtgcg tgagatggac agctgttgcc gagtggatag agtcctgaag cggtggtgca      4320
     acccgggctg gctgagcgga cgcacatcta ttggactcaa tgtcctgcag acacatatgt      4380
     tggatatgtg tattgggcac ataggttgcc ttgcagacac gtttttaacg tgtattggac      4440
     tcaatgtcct gcagacacat atgttggata tgtgtattgg gcacataggt tgccttgcag      4500
     acacgttttt aacgtgtatt ggactcaatg tcctgcagac acatatgttg gatatgtgta      4560
     ttgggcacat aggttgcctt gcagacacgt ttttaacgtg tattggactc aatgtcctgc      4620
     agacacatat gttggatatg tgtattgggc acataggttg ccttgcagac acgtttttaa      4680
     cgtgtattgg actcaatgtc ctgcagacac atatgttgga tatgtgtatt gggcacatag      4740
     gttgccttgc agacacgttt ttaacgtgta ttggactcaa tgtcctgcag acacatatgt      4800
     tggatatgtg tattgggcac ataggttgcc ttgcagacac gtttttaacg tgtattggac      4860
     ttaatgtcct gcagacacat atgttgaata tgtgtatggg cacataagta gccttgtaga      4920
     caagcatgct aacgtgtaac gaactgagtg tttttcagac acatgcgcaa ttacatagtg      4980
     cgagagaatg tgtctgatga tgtgtgtttt gatgatgaat gttcttgctt aggatacttt      5040
     gagtgattcg ttgaatgagg gccttgaatg cgagatggat gatagaaaag tcgtttccct      5100
     aatgaagtat ttgtatgtgt gtacaataac taatgtctgc aaatttgttt cttttaagat      5160
     actgacgatg aaggttatga tggcgatgaa gctggcccat cttccgtggc ccctgcagca      5220
     tcgatgagtg acagcgtgga cgatgtgccc gaggacggtg cacaatcagg agaggccg        5278
//
ID   Gypsy-17_SpFr-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-395
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1871-1871 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 395 BP; 110 A; 36 C; 72 G; 177 T; 0 other;
     tattaggaca atcataatcg ccaatggtaa acaggtgacg tcatctgaca tttttccata        60
     aaaagagcgt taagcgggta attcggtcat ttgctcgttg gctccagaac ggtaaggttg       120
     tcagttgatc ggcactgttt gctattgtgc atattttgtg atttatttgt gatttattgt       180
     tttatgattt attgttttat gatttgtgat ttattgtttt gatttatatg tgatttgtga       240
     gttattttta aaattaacgg ttgtttgtag aagtgattat tttatgtttt attaaattgt       300
     gcaaattaaa gttaaattat ttaaaggtta gaataaacgt tatttttcct ataaaattgt       360
     ttttttttaa ttaattttaa ttctggtacc taaaa                                  395
//
ID   Gypsy-17_TrNi-I repbase;    DNA;    INV; 4174 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4174
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 220-220 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..4156
FT                 /product="Gypsy-17_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAKVSATLSVGTITVFSHEQQEWQLYKERLEQWFLAN
FT                 EIGVDVDKAGCKRRAIFLSNCSESSYKLIRDLALPRQVGTLSYAEIVALLD
FT                 GHFNVKKCLFAERHKFHGATQHVGEGLPEWAARVRGLAVYCGFVSTNLDEQ
FT                 LRDRFVLGMAPGPERDKLFTKAMSELTLSKALEIAEGIRSARMGAQEANRQ
FT                 VDAGTQLQVMKLDTQHSAARGRSAQSRRMLTTACGERARDSYGNGGGSVGG
FT                 ECTACGYAGHQASSCRFVRYKCKKCGVQGHLKRMCKQTFNKQHYVECCGDA
FT                 GDDGKHNMCYNIRTVRGEPMRESVCVNGIQLTFEIDTGSPVTVISEQTYNK
FT                 YFFNITLEVSDVILHSYNGDKLSILGKINLLFTYNNKAFTIGVYVVRNGGP
FT                 PLLGRDFFSRFNLQICSLNNCNDFVKNIASKYTQLFGNKLGCFKGVKVDLA
FT                 LKSDAKPIFFKARPLPFALRERVEKELNRLVDLGVLVPVKYAEYASPVVPV
FT                 LKRDGSLRLCADYSVTINKQLLVDKYPLPRYDELFSKLHGGKYYCKLDLSH
FT                 AYNQLCLNEKSQMLTCINTHKGLYKFTRLVFGLASAPAIFQRNMEALLSGL
FT                 DGTLLFLDDILISGVDKDQMMSRLNEVFRRLLEAGLVLNLEKCTFFQESVS
FT                 YLGFVIDRNGLHKSPEKIKAITQSRVPSNITELKSFLGMVNYYRNFIKNAS
FT                 SILSPLHDLLKRNEPWAWTKKHDEAVSTIKRELVSETTLAHFNPEALLIVT
FT                 VDASPTGLGAVLSQVEGGIEKPISYVSRSLNAAEKRYSQIQKEATAIIFGI
FT                 RKFHQYLYGRPQPFILRTDHKPLVTIFNPDKGIPEISANRLQRYAIFLSAY
FT                 NYKIEYVSSVHNCADFLSRSITDDLTITATHSAHDESLVDKSSYVYFVYEE
FT                 ERFLSMMDIKNAIELDKVITAVIGYLSNGWPNKINEPIIKVYYSHRLELSV
FT                 ENGCLMRGHRLVIPNSLRYKVLKELHTGHLGITKMKEEARNRFWWPGMSVA
FT                 IEQYVGSCAACRSQRAAPPRTPLTPWPFPTQPWHRVHLDFLGPISGKTFLI
FT                 IVDAYSKWVECFDVSTGFSSRVVIEKLCEVMSRFGLFHTICSDNGTSFISH
FT                 EFKEFCNRNNITHLTSPTYNPASNGQAESYVKIIKKAIKSYLSSGTCLRDL
FT                 NVKISEFLLYYRNSKHSTTNRSPAEVLFGRNLRCRLDLLTPTTTMPSDAAL
FT                 DTVVKVKQCSQIDSYRGNRKVTFSVGDQVLVKLYSQQKQYWSRGVIIKSVG
FT                 KTVYLVQLTESGQIIKRHANQLLKYRGREDKSCEKIVPAFILPTHPTSTDQ
FT                 LQPEVSAEESAAQPETTSGLVHGDISTEEEATLATPSIEPEPDPRSKRNRP
FT                 VVDYKKFF"
XX
SQ   Sequence 4174 BP; 1284 A; 809 C; 952 G; 1129 T; 0 other;
     gttggcgacg aggacaaagt acataaatta cgcgtaaaat aagatggcaa aagtatccgc        60
     tacattgtcg gtcggcacga taacagtgtt tagccatgag cagcaagaat ggcagttata       120
     taaagaaagg ctcgaacagt ggtttcttgc aaacgaaatt ggggtagacg tggataaagc       180
     cggttgtaaa cgtcgagcaa tatttctgag taactgctcg gaatcaagct ataaactaat       240
     tcgcgatcta gctttaccgc ggcaagtcgg taccttaagc tatgcggaaa tagttgcatt       300
     attggatgga catttcaatg tgaaaaaatg cttgttcgcg gagagacata aatttcatgg       360
     ggccacgcaa catgtcggcg aagggttgcc agagtgggcg gcacgagtac gtggtttggc       420
     agtatactgt gggttcgtgt caacaaacct tgacgagcag cttcgcgacc gttttgtgct       480
     gggcatggca cctggaccag agagagataa actcttcacc aaggcgatgt ccgagctgac       540
     cctgagcaag gccttggaaa tagctgaagg catacgcagt gctcgtatgg gagcacaaga       600
     agcaaatcgg caagtggacg cgggtacgca acttcaagtg atgaagttgg acacgcagca       660
     tagcgcagca cgcggacgca gcgcgcaatc gcgcaggatg ttaaccacag cttgcggcga       720
     gcgagctcga gacagctacg gcaacggcgg cggcagcgtc ggcggcgaat gtacggcctg       780
     cggctacgca ggtcatcagg catcgagctg ccgttttgtg cgttataagt gcaaaaagtg       840
     tggcgttcaa ggacatctaa agcgaatgtg taaacaaact tttaataagc aacactatgt       900
     cgagtgctgt ggggatgctg gtgatgacgg taagcacaat atgtgctata atattcgcac       960
     cgtacgcggc gagccgatgc gggagtctgt ttgtgtcaat gggatccagc taacttttga      1020
     aatagacact ggttcaccag ttaccgttat ttctgagcaa acttataata aatacttttt      1080
     taacataaca ttagaagtca gtgatgttat tttgcatagt tataacggtg ataagttgtc      1140
     tattctgggt aaaataaacc tactgtttac atataacaat aaagcattca caataggagt      1200
     ttatgttgta cggaatggag gccccccttt attaggcaga gatttctttt cgcgcttcaa      1260
     cttgcaaata tgttcgttaa ataactgtaa tgattttgta aaaaatattg cttcaaaata      1320
     cacacaacta tttggaaata aattaggttg ttttaaaggc gtaaaggtag acttagcatt      1380
     aaagtcagac gcaaaaccga ttttttttaa agccagacct ttaccatttg cgcttcgaga      1440
     aagggtagaa aaagaattga accgtcttgt agatttagga gtgttagtac ctgtaaaata      1500
     cgcagagtat gcgagtcccg ttgtgcctgt tttaaagcga gatggttcgt tacgtttgtg      1560
     tgccgattac tccgtgacaa ttaataaaca gttacttgtg gataagtacc ctttacctag      1620
     gtatgacgag ctgttttcaa aactgcacgg cggcaagtat tattgtaaat tagacctttc      1680
     gcatgcctat aatcaattat gccttaatga gaagtcacaa atgctgacct gtataaacac      1740
     acacaaaggt ttatataagt ttactcgctt agtgttcgga ctagcgagtg cccccgccat      1800
     ttttcagcgg aacatggagg cgcttctatc agggttagat ggtactcttt tatttttaga      1860
     tgacattttg attagcggag tagacaaaga tcagatgatg agcaggttga atgaagtttt      1920
     ccgtaggttg ctagaagcgg gcttagtttt aaacctagaa aaatgtacct tctttcaaga      1980
     atctgtttcc tatctagggt ttgtcattga ccgtaatgga ttgcataaat ctccagaaaa      2040
     aattaaagct attacgcaaa gtcgagttcc tagtaatatt acagaactaa aatcattttt      2100
     aggaatggta aactattatc ggaattttat taaaaacgct tcatcgattt taagtcccct      2160
     gcatgactta cttaaaagaa atgagccctg ggcatggact aagaaacatg atgaagcagt      2220
     gtcaacaatt aaacgcgagt tagtgtctga gactacatta gcgcatttta atccagaggc      2280
     attgttaatt gtaactgtcg acgcgtcacc gaccggttta ggcgccgtgt tatcacaggt      2340
     cgaaggcggt atagaaaaac ctatctcgta tgtttctcgt tcactgaatg cagccgaaaa      2400
     acgctacagc caaatacaaa aagaggctac cgctataatt tttggtataa gaaaatttca      2460
     ccaatatctg tatggtcgac cccaaccttt tattttgaga actgaccata aacccttggt      2520
     tacaattttt aatccagaca agggcattcc cgagatatca gcaaatcgtt tacagcgata      2580
     tgctattttc ctatccgcat acaattataa aattgaatat gtaagcagtg tacataattg      2640
     tgcggatttc ttaagtcgat cgataacgga cgatttaaca ataaccgcca cgcactcggc      2700
     gcatgatgag tcattagtag ataaatccag ttacgtgtat tttgtttacg aagaagaaag      2760
     atttttgtca atgatggata ttaagaacgc gattgagcta gataaggtaa taacagccgt      2820
     catcggctac ttgtcaaatg gttggcctaa taaaattaat gaaccaataa ttaaggttta      2880
     ttacagccac cggttagagt tgtctgtaga aaacggttgt cttatgaggg gccacagatt      2940
     agtaattcca aatagtttgc gatataaagt attgaaagag ttacatacag gtcacttagg      3000
     aatcacaaaa atgaaagaag aagcacgcaa tagattttgg tggccgggta tgtctgtagc      3060
     tatagaacag tacgtcggct catgcgccgc gtgtagatcg cagcgcgccg cgcccccgcg      3120
     tacccctctc acaccatggc cgttccctac ccagccgtgg catcgcgtac acttagattt      3180
     tctagggccg atcagcggta aaacattttt aattatagta gatgcgtatt cgaaatgggt      3240
     ggaatgtttt gatgtttcaa cgggtttctc ttcgcgagta gtgatagaaa aactatgcga      3300
     agtaatgtca cgatttggct tatttcatac gatttgttca gataacggaa cgtcttttat      3360
     atcacatgaa tttaaagaat tctgcaatcg taataacatt actcatttaa cttcaccaac      3420
     atataaccca gccagcaatg gacaagcaga aagttatgta aaaattataa aaaaggcaat      3480
     aaaatcatac ttgtcatcag gtacatgttt aagagatttg aatgttaaaa tatcggaatt      3540
     cttgctttat tataggaatt ctaaacattc gaccacaaac agatcaccgg cagaggtatt      3600
     gttcggacgc aatttgagat gtcggttgga cctcctgaca ccgaccacca ccatgccatc      3660
     cgacgcagcg cttgacacag tggttaaagt taagcagtgt tcgcagattg acagttatcg      3720
     tggcaaccgt aaagttacgt ttagtgtggg tgaccaagtt ctggtaaaac tttatagtca      3780
     acaaaaacaa tattggtcac gtggtgtgat tattaaaagt gtaggaaaaa ctgtatattt      3840
     agtccaacta actgaatcgg gtcaaattat caaaagacac gccaaccagt tgctcaaata      3900
     tagagggaga gaagataagt catgtgaaaa gatcgttccc gcattcatac tgccaacaca      3960
     tccgactagc accgaccagc tgcagcccga agtttctgct gaggagtcag cagcacaacc      4020
     agagacgacc tcaggacttg ttcacggtga catctccacg gaagaggaag caaccttggc      4080
     aactccctct atagaacccg agccagaccc gcgctcgaaa cgaaataggc ctgttgtaga      4140
     ttataagaag ttcttctaaa tagaggtgga ggga                                  4174
//
ID   Gypsy-17_TrNi-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-150
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 174-174 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 150 BP; 40 A; 30 C; 31 G; 49 T; 0 other;
     tgttatgtgg gtacctacat atatctttta agaacaatta tagggtagac cacggacacc        60
     gtgtgattta atgactgctg cgtcagtcga ataaacgagt ttgtacgtat cggttgttat       120
     ttcttcttcc acgacccctt ggacataaca                                        150
//
ID   Gypsy-17_TrVa-I repbase;    DNA;    INV; 4759 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4759
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 262-262 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..4539
FT                 /product="Gypsy-17_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSNENVSGSRNVDANVVNNRIINFQPNLSQLEIEGIA
FT                 NVHLNWVSWLSQFKLYLTASGLSKENDERKVALLLSLIGPQGLAVFNSFNE
FT                 DASTISFVNLIQLFDSRFLPKKNLTIERHKFLTRRQLDQESIDDYVLILKN
FT                 LSLSCEFGALREELVRDVLICGLDRKHIVIKEKLLHQDEKDLDKVIQLCKS
FT                 LELTQKQVLDMQESLDVGKVFAVSQNENRSSSNYNSSSHRNFRHRSQSHRH
FT                 NRQRHRSKSFNRHQPRNRSRTRRNSSSSSNHHSPNQTSQSNVPCNNCGQTH
FT                 RYRCPAYGQRCYNCQGVNHFSKLCRNKSIRHLYSNENNPSQESNDYFICKL
FT                 KSDNDSDMWSVTLSINNQPAVAQLDTGAGINAMSLSHFKRLNLNETLIYPA
FT                 KAKITSFCGNDMDVTGIAELTCYYNNQRFLLPFYIMNQDCCMILGRKSCID
FT                 LKLIKRVNTISHNNSANSHKNSVNNCQAMLKKYASVFKGLGCFSKPCKLYL
FT                 RPDAIPIVDASRRLPFRLHRKVKKELQRMVNDEVICKVTKPTDWVSSMVIT
FT                 VRKSGHIRICLDPRNLNKSLLRSHFPIPTIEEIRSKLNGSKYFSTLDANSG
FT                 FWFIPIHSESTDLLTFNTPFGRYKFLRLPFGISVAPELFHRTMVECFGDLP
FT                 GVEIYLDDLLVHASTKEEHDQRLENVLKRATELNIKFNQQKCVFGTTSVKY
FT                 LGHIFSGEGVKPDPERVRAICHMDPPTDKKQLLRFLGLVNYLANFLPNLSE
FT                 KSQSLRNLVKKNAEWKWGPQEDESFKQLQHLVTSAPVLSHYDPNKKIVLSV
FT                 DASKSAVGATILQDNKPIAFASKSLTSTQQNYAQIEKEMYAVAYGCSKFKQ
FT                 YIYGQHIKIETDHSPLVTISKKPLGSIPSRLQRMFLQIQAYSYDIVYKPGK
FT                 LMYVADTLSRAALPETDQFLDEDLSIHVNLLTESLAVRPETLEKIKEATAN
FT                 DEEMKIIMKYHQEGWPKDKSLVENVAKPYWDVKDEIAVENNLVFKNTGIVI
FT                 PPSLRKYILGLIHLSHMSVERTKSMVRGVLFWPFMSMQIKHFIDNCATCSK
FT                 FCRNNPKEPLQSHEIPFRPWQKVGTDFLSFDNINYLIMVDYYSKFIEMATV
FT                 KSLESKNVIPHCKSIFSRHGAPEILVSDNGPPYNSNDFKIFCENWEIKHIK
FT                 SSPHYPKANGLAESAVKIIKNMLKKCKESKTDPYLALLHLRNTPKEDMEAP
FT                 SKLLMSRRLRCNLPISKNLLKPQVVDHDNHRKQLRFRXSTSKYYYDRNSKP
FT                 LPPLNNNETVYFKLQPKGHWIPGTILRQTGIRSYVVESNGKTYIRNRFHIL
FT                 KKPSSILHHPLVTPVPVRQSSFDSHRQSSENELSANQSSTVSTSPNIQSPI
FT                 PSTSLNNQSITPVNESPRSNFQTTSNHSSQSSTSSSFNSVSSCNPSPNQNA
FT                 TLNETPKSHLPPPRRTVRGRIIVPPRKLFDYER"
XX
SQ   Sequence 4759 BP; 1575 A; 948 C; 800 G; 1435 T; 1 other;
     tggtgtcagg tagggtcaaa tttcgtcgtc gtctagtcat tttagtgtat aattctcgtt        60
     tgtaattcgt gtagtttgta aaatatcggt cttgatctca tgcgtctcgt cacgtacctc       120
     gtcgtttcgc gaattccttt gtctttccgt cgttcgtcca catggtcata tcgtcctttg       180
     taagaagttt tagtcatcat gtccaatgaa aatgtctctg gatcaagaaa tgtggatgcc       240
     aatgttgtca ataacagaat catcaatttc caaccaaatt tgtcacagct ggaaatcgaa       300
     ggaatagcaa atgtccactt aaactgggta agttggctca gccaattcaa actgtatttg       360
     actgccagtg gtctctccaa agaaaatgac gaaagaaagg tcgcactttt attatcttta       420
     attggtccac aaggtttagc tgttttcaac tctttcaatg aagatgccag cacaatttca       480
     tttgtcaacc tcattcaact ttttgacagt cgtttcttgc cgaagaaaaa tttaacgata       540
     gaacgccata agttcttaac acgtcgtcag cttgatcaag aatctataga tgattatgtc       600
     ttaatattga aaaaccttag tttatcttgt gaatttggtg ctttgagaga agaactggtc       660
     agagatgtac tcatttgcgg tctagatcgg aaacatatcg ttattaaaga aaaactcttg       720
     catcaagatg aaaaagatct cgacaaagtt attcaactgt gtaaatctct tgaattaact       780
     caaaaacaag tccttgatat gcaggaaagt cttgatgtag gtaaagtttt tgctgtgtct       840
     caaaatgaaa acaggtcatc gtcaaattac aactcgtctt cgcacagaaa ttttagacac       900
     cgatcgcagt ctcaccgaca caatcgtcaa cgccatagat caaagtcgtt taacagacat       960
     caacctagaa atagaagtcg caccaggcga aacagttcta gctcttcaaa ccaccatagt      1020
     cccaaccaaa cttctcagtc taatgtgcct tgcaataatt gtggtcaaac tcaccgctac      1080
     cgttgtccag cgtatggtca gcgttgttac aactgtcaag gtgtgaatca ttttagtaaa      1140
     ttgtgtagga ataagtcaat cagacatctt tactcaaacg agaataaccc tagtcaagaa      1200
     agtaatgatt attttatttg taaattgaaa tctgacaatg attctgatat gtggtctgtc      1260
     accttaagta tcaataatca gcctgctgta gctcaattag acactggtgc cggtattaat      1320
     gctatgagtt tgtctcattt taaacgtctt aatttaaatg aaactttaat ttaccctgcg      1380
     aaagcaaaaa ttacctcttt ttgtggcaat gacatggatg taacaggtat tgccgaattg      1440
     acgtgttatt ataataacca aagattttta ttaccgtttt atattatgaa tcaagattgt      1500
     tgtatgattt taggacgaaa gtcttgcatt gatttaaagc tgattaaaag agtcaataca      1560
     attagtcaca ataattctgc caatagtcat aaaaattctg tcaataattg tcaagcaatg      1620
     ttgaaaaagt atgcctcagt ttttaaaggt ttaggttgtt tctccaaacc atgcaaactt      1680
     tatttacgtc ctgatgcgat cccaattgtc gatgcaagta gacgtcttcc ttttcgcctg      1740
     cacagaaaag tcaaaaagga actacaaaga atggtcaacg atgaagtcat ctgtaaagtc      1800
     accaaaccta ctgattgggt cagttcaatg gtcatcaccg tccgtaagtc tggtcacatt      1860
     cgtatttgcc tagatcctag gaatttaaat aagtcgctgc tcagatccca ttttccaatt      1920
     ccaacaatag aagaaatccg gtcaaaactc aacggttcca aatacttttc aacgctggat      1980
     gcaaattcag gtttctggtt tattcctatt cattcggaaa gcactgatct actaactttc      2040
     aatacgccat ttggcagata caaattttta agacttccct ttggtatatc agtagcacca      2100
     gaattgttcc acagaacaat ggttgaatgt tttggagatc tacctggagt tgaaatctat      2160
     ctggatgatt tactagttca tgcaagtact aaagaagaac acgatcaacg tcttgaaaat      2220
     gtcctcaaaa gagccacaga attaaatatt aaatttaacc aacaaaaatg tgtttttggt      2280
     actacgtctg tcaaatactt aggtcatatt ttctcaggag aaggtgtaaa accagatcca      2340
     gaacgagtcc gagcaatttg ccacatggat cctccaacag ataaaaaaca acttctacgt      2400
     tttttaggtc tagtcaatta cttagcaaat tttttaccga acctgtcaga aaaatctcaa      2460
     agcttaagaa atctagtcaa gaaaaatgcc gagtggaagt ggggtcctca agaagatgaa      2520
     tcattcaagc aattacaaca tctagtcaca agtgcgccag tcttatcaca ttatgacccg      2580
     aacaagaaaa ttgttctgag tgtcgatgcg tccaagtcag ccgtaggagc cactattctg      2640
     caagacaata aaccaattgc gtttgcgtca aaatctctca catccaccca acaaaactat      2700
     gctcaaatcg agaaagaaat gtacgctgta gcctatggct gtagtaaatt taagcaatac      2760
     atttatggtc agcacatcaa aattgaaact gatcactctc cacttgttac catcagtaaa      2820
     aagccgttag gatcaatacc gtcacgatta caacgcatgt ttcttcaaat tcaagcctat      2880
     tcgtatgata ttgtctacaa accaggcaaa ctaatgtatg tcgccgacac actttcaaga      2940
     gctgcgttgc ccgaaactga tcaatttctt gatgaagact tgtcaattca tgtaaacttg      3000
     ctcacagaat cgttagctgt tcgacctgaa accttggaaa aaattaaaga agctactgcc      3060
     aacgatgaag aaatgaaaat aatcatgaag tatcatcaag aaggatggcc gaaggacaaa      3120
     tcgctagtag aaaatgttgc caaaccatat tgggatgtta aagatgaaat tgcagtcgag      3180
     aacaatctag tcttcaaaaa cacaggtata gtcattcctc cgtctctaag aaaatatatc      3240
     ttaggcctaa tacatttaag tcatatgagt gtagaacgta ccaaaagtat ggtgcgtggt      3300
     gtgctatttt ggccttttat gtcaatgcaa atcaagcatt ttattgataa ctgtgcaact      3360
     tgttcaaaat tttgtcgcaa taacccaaaa gagccattac aatcgcacga aattccattc      3420
     cgtccatggc aaaaagttgg aacagacttt ctttcttttg acaatattaa ctatttaatt      3480
     atggttgatt actattccaa attcattgaa atggctactg tcaaatctct tgagtcgaaa      3540
     aacgtcattc ctcattgtaa atcaattttt agccgtcatg gagcacctga aatattagtc      3600
     agtgataacg gtccaccgta taatagtaat gattttaaaa tattttgtga aaattgggaa      3660
     atcaaacaca ttaagtcaag tcctcactat ccgaaggcaa acgggttagc agaaagtgca      3720
     gtcaaaatta ttaaaaacat gctaaaaaag tgtaaagaat ctaaaacaga tccgtatctt      3780
     gctctcctac atctgagaaa cactccaaaa gaagacatgg aagctccttc caaattactt      3840
     atgtcacgtc gtttgagatg taatttgcca atctctaaga atctgttaaa gccccaagtt      3900
     gttgatcatg acaaccacag aaagcagtta cgatttcgcc wgtctacctc aaaatattac      3960
     tatgatcgta attcaaagcc gctacctcct ctaaacaata atgaaactgt gtatttcaag      4020
     ctgcaaccaa aaggacactg gattccaggg acgattctcc gtcaaactgg tataagatct      4080
     tacgtcgtgg aaagtaatgg taaaacatac attcgcaatc gattccatat tttgaaaaaa      4140
     ccgtcgtcta ttctacatca cccacttgta actccagttc cagtccgtca atcgtcattt      4200
     gattctcatc gtcaatcgtc agaaaatgaa ttgtctgcca accagtcttc cactgtgtcc      4260
     acatcgccaa atattcagtc gcccattcca tcaacttctt tgaataatca gtcaattact      4320
     ccagtgaatg agtcgccacg atcaaatttt caaacaacat ccaaccattc atcgcaatcg      4380
     tctacttctt cttcctttaa ctctgtgtct tcgtgcaacc ctagtccaaa tcaaaatgca      4440
     actttaaacg aaacgccaaa atctcatcta ccgcctcctc gtcgcacggt tagaggtcga      4500
     atcatcgttc ctcctagaaa attgtttgac tatgaaaggt aataaccatt tcattttttt      4560
     tttatgtatg actaagttgt aaatgaactt tacttctttt aaatcaaatt ttaatttttt      4620
     ttaatcttgt atgtgttaaa tttgtatgat cataaatcaa ccgcactatt ttgtctgtga      4680
     tagaaaaaaa aaaaaaaaaa tgttgcttct aaagtttttt taaaaaaaaa aaaaaaaaaa      4740
     aaaaaaaaaa agaagagcg                                                   4759
//
ID   Gypsy-17_TrVa-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-17_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-184
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 321-321 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 184 BP; 42 A; 41 C; 31 G; 68 T; 2 other;
     tgttaggatg tatcatagtt tagscaatct gccgcctgtg gcagcactgt agaacctacc        60
     agtcggggtt gtcgtagctg ggtctacaat atawtctctc ttgtcatggc taccatcatc       120
     tgtcataacc tgcctctttt aatttatcgt tcaaatcctt tttaatattt ctcattttat       180
     aaca                                                                    184
//
ID   Gypsy-18-I_NVi repbase;    DNA;    INV; 16651 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-18-I_NVi; RRM motif.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-16651
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 773-773 (2009).
XX
DR   [1] (Consensus)
XX
CC   The 3'-end portion encode a RRM (RNA recognition motif) domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3621..5171,4829..9100,8982..10316,10327..12345,
FT                 12363..13424,13544..15277)
FT                 /product="Gypsy-18-I_NVi_1p"
FT                 /translation="MTDETGNRTGENTGADLATTMANSFMLMSCVSGIPSF
FT                 DGKHTKLRDYIQDLKNANELVTEAIRPQFMRNVLQRITGAAKKSLNNKTIT
FT                 TVEDLIKHLKQRFGPGRDFSYYNTRIQTVKMRQGDTVGDFYDELNVLLSSA
FT                 RNALKEEKGSDNLDAMMEPLEMLAVDIYIRGLPANLSERVDLFKPKNLREA
FT                 YEEAVRLETRMEARIIPDSRPRVNRSYYNTERRDSYNNGYRNEGGGYNNRG
FT                 GYNNEEYRNQDRYDNRNRRHDDFIGYMPEEEECAGYVEEEEDYARYDNEDE
FT                 DYVGYVNEPEQRQREFQDNHRRNNYNRNNYNQNGYQGYQRGNGSGNNYNRG
FT                 GYQRGYNNSNRPGGSNWPSWNRNYGQRSQRQIFNHENGRRENYQPSGPDRR
FT                 ENYNNYPNNWRNGNARNYQQNENERENLNSQRARHGERMTSQEQNQQPIQK
FT                 PQQNVDYQKYQQQTQGYNQGRQNPNQSSQNNQVQQKAPVMAIMTREQELPI
FT                 YGQPTARDLKSLIGKMMNQQQLEKRQCKKLSTKRKRTREFKLSKGSSWRKN
FT                 DEPGTEPTTYPETTAECGLPEISTTNTGLQSRQAEPKSEQPEQPGAAKGTS
FT                 DGDNDKGTGTSNIWTADCKGPEEFNWENDEPTAIKVHIPQGTTKPWLTFMI
FT                 DNGASVNLIKLSFIHDDMPINMKDVRNLGGITTGTVPTLGAVYLLIRNTPV
FT                 KFHIVTDDFPTPHDGLLGRNYLKKEEAVISYFNNALMVGGDVMHPMPFLGQ
FT                 EKEYREKRKRAHNSYKTSNVLQVEDKKDDKEAPVTDVSKNEKTPAKTKHVL
FT                 KARTRQVVRINLIRSELKEGYIPRIDVGNENVFLGEGVVINDNNTCKMMAI
FT                 NTSEEDVMIEVDAKELIPFDTEPNFLEETDSEFNGEVIVDRIKRLEKVKES
FT                 IRRSHLNQEELKIVDRIIEDYLDRFLLPGDKLPCTDMIQHHIHLEDDIPIN
FT                 TKQYRHPPKHKQVVRESVEKKLRDKIIRESNSPCNSPIWIVPKKPDSHGNP
FT                 RWRMVIDFREINKKTIRDAYPLPNIADIMDQLGGATYFSIFDLASGFQQIP
FT                 MAPEDCYKTAFTTLNGHYEYTRLPEGLKNATATFQRLMEKALRGLQNIEML
FT                 VYLDDIIVYSKDLQEHEQRIRHMMDRLRLAKLVLQPDKIEFFRREVGFLGH
FT                 IISSRGIEPNPEKVEAITKLPTPKTAKNVRTLLGMFGYYRKYIKDFAKIAK
FT                 PLNDLLKKNVKFEWTEDCEKSYQILKDCLVREPILQFPDFNKEFTLTTDAS
FT                 DYAIGAVLSQEKDGFDHPVQYLSRALNKAERNYSTTEKECLAVLYALHQFR
FT                 PYLLCRKFTLVSDHEPLNWMHSRKDPGQRLMRWMFRFTGYEYTFKYKPGKL
FT                 NKNADALSRNPPEMTEEEINKNLPSIKIMVIEEKQSKQEKAAASVAKPAKG
FT                 IVQPRTRIQSTGDIANKPRGRGRPIGAKTNKEAPKLEHSVIAQRTRARRAQ
FT                 VQSPVGQYIKQGAIPRVPKPVASRKATKPGKPVTAKPTAETSTEASTAETS
FT                 SIQLKEIPESSTDADSDTSMTVNPSRRSWLSSTTNEDTDSEKPPIPDPRYS
FT                 GLRQEDTETTEEETEDDEVFSLEGNQDKTISNIAIEVSAIEGSNTEESSED
FT                 ESIKNLSVKTTLTREEVEEASRKFEESMKRYEMDKDTNTTESGTEIAIQLQ
FT                 IPSHFSDDDEVADEVREAIYTSDPRFQTEEEIDIDNVWRKSVQKLIKRARQ
FT                 KLQETTREENSGSDSDVESLADIIMPPPRKTLSVTPTITSGSPTAKSTPQN
FT                 KTKARRKLGVLSEIEAEDGSIIDIRFSKPPEITMPFLLPTPPDLEPLNKDY
FT                 TPTENDHESEDAPTHITFKKIPQNIITVRECITHKRDNIVHFLSADCDNTW
FT                 PVTRLLVEIGAIDLTKIKSKKPKIGQILVTPLQKTSHIHSNNXRQMLQRNK
FT                 NRKFKQGTSESKRNTHQSRHYKKHHIFTVIXKDKCFNVIKIENLNKGLRNL
FT                 KETLINKKITSFRIARKGDILDQLESPIILDVLYKHFHGSRIRVTMCYGKA
FT                 QVPAEKHRKEIISHLHDSLTGGHKGINQTYQKIRERYYWPGMRNDVQDYIR
FT                 RCAECQEQKIERFKTREPMIITDTPIEAFDKVSIDTVGKLKMTPRGNCHLL
FT                 TMQCNLTKYLIAIPIKNLNATTIADALAKYLICQFGAPRAILSDRGTSFLS
FT                 KIVESLLKLFKINHLTTSGYRPQTNGSLERSHAPLIEFIRIYSERYDDWDH
FT                 LTPFATFTYNTSVHAATNFTPFELVYGRIARFPLRIPSDEKLKTYNVYMRD
FT                 LVLRLEEMKILAGETQIANKIKTKDRYDEKVRAFKGRVGGYARLINEPRVS
FT                 KFDAYRNKPLRIIEFLGRKNVLLEYPNGKRIRKHIDKLKAVEDKSDNEDSD
FT                 SFNPCYRMKILEIIIIIFNLLNVRRCEPMYQIEPLNPNPGIYFEKLDVIRI
FT                 KKATWKLNIYIDVEDFMQTHNATDSYKEIFEICKKVMEERKCRHALAIDLL
FT                 QIKEQELAKTQEKIKETIASLGHTQYPTARIPRSIRTKRLVPLGIIGSISS
FT                 SLFGLVTNDEVDNINKNIDQLFQDQSKMVHLLDENSHIISAKFEELYNITS
FT                 NHQKVLQGFEKELTKTIKTILREKDQMKYQVEVVIYVKRLESTLDHVIKSN
FT                 EKLLEILRKLKEGKVHPDLMKQDMVQQMNMDVKRVSQDLEFPPPPEHMRAE
FT                 ELARISEIDAIHQNGRTLAVLHLPLVDRMPYQLYKMHPINIPQNMKNETMG
FT                 QAFIRPSHEYIAISYDHTRYIKFNEDQRQMCIKTHYADICPILGALRNVPE
FT                 SRDCEITLLLNPSQKAITQCDIRYRLSEQTQWTYLNYDKSWLYSTIRPEIL
FT                 NIICQDKHENKVTIKDAGIVHIAPICIGTTAEATITGEVTRNTEFTYVYKP
FT                 EINLKITDIYPLLNQEDTSLEVHSSENIDVLGPNMANNDGRPLHEIVSKLR
FT                 EIGEHKRQNYSTNTVLYGSMTVQLIIVTIIIIIIIKMKCLRKWRCPKNKKR
FT                 RNPSPRINTKRRKIETKDEEIELEDILGSHKNHAILRLDRENPKTNAQSTT
FT                 KKFALPKQEAECSIFEFPGRLYIAKQCLTNQKFFFSNMIDVIYLQTKEYTM
FT                 DFRPRTNISMFCDVDIPLSNIIREFERVGEPQNARVEKHRYERETKKITLS
FT                 FNSEREIAKAYELRSLLAKQNKLKRNSKRAAPYQTPMITTGPKTAIGDLID
FT                 LTPKEEPTVRSEVHVVNQPSTPQPIRNRLFCLLPWDGNDREKDEMFFRHFA
FT                 QFGTLAYYETVRDKKGRLSYGYVQYFTQEDTKAAKEESDPMYKATFAEPRR
FT                 LPRAAQGTANTKFHERCKQMIEVEIYNLHEITCKKQIAWTQDNVSEDPLSK
FT                 LQPLQETIMELKEKIAKLENQKENNRHPPTPRTNRVSHERPKTPEATLPDL
FT                 DENDSSMSIENNQIHITYNYHTTLFELFSDMDQVLKNIVTSIVFDEVLDHV
FT                 TICFDPAGKLPMVMKLLNSYGPNNTVTFEIIPRGPHHDSARLTIKYRTRTS
FT                 ATRLRSDYKTSRTEDRMTVEQRVEAPTDSDSSDTDDEHSSSDSSTTDGTDG
FT                 TDNTSDTPESDANDENDEVILNSDEDVPQQDNDNNEDNMNSDSDNATGNDN
FT                 DHIPDNNDDNYGSNDIDNADNNDINSDDNVNDNGYPLQYNPQNNVELLKMN
FT                 LTDAYTITAIYRGDTIDAEALFRQYGPCHTEHYMSTTDDTKAISTRYQLDR
FT                 HARKIINLYRQYIQRTDEDVQGLRRQEREQGPPTTEYVRSDDTICVRVPRT
FT                 VSKQELTEIFATFGEIADIRRIKPNDEDERYTAFIQYRHKDSAYKAVTETD
FT                 NTYLPKWAYNRRQRTTKPATTQENAQERQRTEGPQEPAQRQRRWTLDPANN
FT                 TKLYVLAPPDTTQQEFRADFIKYGEAIQIELTNGKKENNEKVGYVIYKDKI
FT                 DAIDAKLNGPRKYKIDWKLTPQTTETLLHFTCGDQIPIQSFTDHTRDCTTT
FT                 TLRRRLQDKKKRTTEYQQTSRRETEC*"
XX
SQ   Sequence 16651 BP; 6590 A; 3298 C; 3215 G; 3547 T; 1 other;
     aaactggggg ttcgtccggg atctgcttag cttttgttgc ttgcaaaact gtttggtttt        60
     ctgtgtttaa aataattttt tttggtgagt gagtgaacat ataaaaaaaa agatcccaat       120
     taagtgcgcg taaatacgaa aaatattaaa aagtcataag tgcgacaaag agagaaacga       180
     gagaatataa aaagcaagag cattgatagg agtttgaaat tcgagacgcg cgcgcaagca       240
     cacaaagacg ccgtgacgtc actgcagcca catatcgggt gggacgcgca gtaacgtcag       300
     tgattttaaa ataatttttt ttttattatt tcttgtgact cttacaatta ataagttcgg       360
     acgttttact agttaaaaat cattgagacc cagtggatat taggagaggt acccaaataa       420
     gacaaaacgc aataatatta cacaatatct tttcttacac cagcaatttt ctttacacac       480
     tcaatgcaca agcagtttga tgagtcctgc cacacaacat atacacataa aagttcatta       540
     caagtacttt gatattacac acaaagagta gaatcaagat tttgaaaatt ggcatcgcat       600
     tcgagtcaca caccaacaat ctacaatata cctccgtagt ttgatatcac aaattattgt       660
     tcactaacca gtacacagag agacgcataa aacagtaact tccaaaacat ttacacatag       720
     aatcacacca attttcattc aacaattttt ttttttgcat tacattttga ttgccgacac       780
     ttgactccaa aaacaggcac agtcctacat tttacagtct aattcagaac taacaaaaaa       840
     aaaaaacaaa acacaaattc taattgacac cattcgcctt gacactctgt atttaactaa       900
     aattacactt gtaacactgc actatttctc ttgaatacag aacacacgta ggggtgggcc       960
     cgttaggaca ctgctcgtgc tccaaaataa ccgaaacacc cagaatctgg tcgacgagta      1020
     gcactagagt gcactggcaa gtgatcgcca gaagtcgagc cagggccttg acgaggctgc      1080
     tgcgtagagt cttggactcc ggctttcgca ggagaaagtc tgggctcttg cactcgaacc      1140
     agctaacttg ggtgttgaca cgcctattga gaacctgtaa ataccaaaaa taattaattt      1200
     catgcgtatt tgtaccccag ataataatta ataccatatt ttgaccactg agcgaggaaa      1260
     cgctaaaatt tttgtatatg aaacccattc ttacacacat ttatttgcac aactttgcgt      1320
     aaggcatatg gattaacaag gacccattgc tagacatagt ttaggggaaa ggcaagaaag      1380
     tctaatcaaa aatatatcga gatagcttga tcagaaccag gcgaggacac atatatctaa      1440
     cctagtttgg cgtcaaagta tttctgacca aaaccataaa tattaatcat tttgaacaaa      1500
     acaaaataaa atcccagggt ttaggttaaa acacatctat tttgcacaaa aagacccaat      1560
     aaatattaat aataattgtc aaaaagcgac aattgaccct cagacgcgac aaatttataa      1620
     caaagtcagc atatagcaag ctgattatca cctataattt acaggaaaag tattaacaag      1680
     caacagaggg agtgtgtgat taataatatt tgcaaaaatt acataattat tgttaatggt      1740
     accaaaaact ttaagtatag aagcacggct ctaaataaaa tacggtttta gaacaaggtt      1800
     tggactatta aaaataaatt taacattcga ttattcaaca caagcaacat tagaaacacg      1860
     aacaataatt tattaatagc taagtgatag aagcacggtt cagaatacat gaaagacgct      1920
     tgtcgcacaa atttctactt ttaaattctc caagtctatt gaataaaaac cccaagtaca      1980
     cgactgagtt attaatcaca cacgccacaa ttattgttaa ttaaaaaaaa aaaatagaga      2040
     gagagcaagt ggtaaaaata tctgcttaca caaaacacac ccatgacgtc atgcagactc      2100
     agcactgtcc tccttgatct tgaggatgtt tgtaaaaaaa ttcaagctgc tgctgactgc      2160
     cacgaaagct gaaaagaaag acaaaacaag tttacacaaa gcaacagttc tcgggttgtt      2220
     tgcaagaaat ttaatattta tttaataaaa aaaaaaaact tatctgagtc agctgataga      2280
     gttgcagctg cgacattggg aacaatcctg ggcccgaact ttgacctttg caggaacacc      2340
     gtgatagcac gcacacgcac ttttgattga acgatacgag acgacacgca cggttcacct      2400
     tttgcaaaac aattagcaat aatttgaagg cgaaaagtac acgcgacgca acacgaggca      2460
     acagctgacg caaacggact cgactaggga gtttgactgt agcgagaagt taggcgcgga      2520
     gcggtgccac acccaagcta gtgactatag actcgagagc gggcggacgc cattttgaga      2580
     gcggcggagc gcgcgcgaat atttgaattc gaatattgga cttcgagact tttcaagaga      2640
     attattgtaa agtaaattca gtaattaaac aattaaacta ttgctactgt atttagaccg      2700
     gattaacgaa aacaagggcg tgtccattgg aattaaatta tttccttacg actttgaaat      2760
     attacgtgac agtttgagac cattcagaaa caatagtttt tttttgcata atagggcttt      2820
     tacataaata taaataatct ttacggttaa gactattatt caaacattat atgttaataa      2880
     ttataggcga attaatttcg aaaacactat ttagaggaaa ttcatttaca taatcgataa      2940
     caacaaatag tcatctatta tttttaaata aataaattaa ttttgaatta tacaaaataa      3000
     ttagcataat taaattttct tttcgggaat ttttgcgaag aaaataaatc acgtaaatat      3060
     tttaattgaa tttacaaaac cggaccatca ctcttaattt aaatttgact taaattttga      3120
     cagaggacac gacacaaatt ttctttttcc cattaaaaaa aatgcacgat ttgacgactc      3180
     tcgttggata agcctttagt ttagacatat acccgtgaac acttaatatt aatttagtat      3240
     taatatttta ttacaatatt ttattgacta ctggttttat tattaatcat tatcaccatt      3300
     tattattatt tatcgaaccc cacaataatt aaacgaaaat taactatcaa aaatcccaca      3360
     atttcgttta cgttacccct taatatactt caatatatta tctataccca catcataaaa      3420
     ttttaattac aataataata ataacatatg ataaatataa tattgggatt gtgaggagag      3480
     gaaataaggc tttaataaaa tagtggcacg gaattacgga ctctctataa agcaagaacg      3540
     ttttagaagc atttagagaa ctatctagag gattatttag aattttctac gacaattaag      3600
     aggcagtaaa tctattcaaa atgacagacg agaccggcaa taggacgggt gaaaacacag      3660
     gagcagactt ggctaccacc atggccaata gcttcatgct tatgagttgc gtaagcggca      3720
     taccaagctt tgacgggaaa cataccaagt taagagacta catacaagat ttgaagaatg      3780
     caaatgaact tgtaactgag gcaatacgac cacaatttat gcgaaatgtg ctgcagagaa      3840
     taaccggagc agcgaagaag agtctcaaca acaaaaccat aacaacagta gaagacttaa      3900
     ttaaacattt aaagcagaga tttggtccag gcagggactt tagttattat aacacacgta      3960
     tccagacggt caagatgagg caaggagaca ctgtaggaga tttttatgac gaattgaacg      4020
     ttttactgag cagtgccagg aatgcattga aagaagaaaa gggaagtgac aaccttgacg      4080
     cgatgatgga accattggag atgctggcag tcgatatata cataagggga ttaccagcta      4140
     atttatcgga aagagtggac ttattcaaac caaagaatct acgagaagca tacgaagagg      4200
     ctgtgcgact agaaacacgc atggaagcca ggatcatacc ggactccagg ccacgagtga      4260
     atcgaagtta ttataataca gaaagaaggg atagttataa taatggatac cgcaatgaag      4320
     gtggcggata taataataga ggcggatata acaatgaaga atacagaaat caagatagat      4380
     atgacaacag aaatcgcaga catgacgatt ttataggata tatgcctgaa gaagaagaat      4440
     gtgcaggata tgtcgaggag gaagaagatt atgcaagata cgacaacgaa gatgaagact      4500
     acgtaggcta cgtcaatgag cctgaacaac gccaacgaga attccaagat aaccatagga      4560
     ggaacaatta taaccggaat aactacaacc aaaatggtta tcaaggttat cagagaggaa      4620
     atggtagtgg caacaattac aatagaggag gataccagcg ggggtataac aacagcaaca      4680
     gaccaggagg gagcaattgg ccgtcgtgga atagaaacta tggtcaaaga agccaaaggc      4740
     aaatttttaa tcacgaaaat ggacgtcgtg aaaattatca acctagtggt ccggatagac      4800
     gagagaatta caataattat cccaataact ggagaaacgg caatgcaaga aactatcaac      4860
     aaaacgaaaa cgaacgagag aatttaaact ctcaaagggc tcgtcatgga gaaagaatga      4920
     cgagccagga acagaaccaa caacctatcc agaaaccaca gcagaatgtg gactaccaga      4980
     aatatcaaca acaaacacag ggttacaatc aaggcaggca gaacccaaat cagagcagcc      5040
     agaacaacca ggtgcagcaa aaggcaccag tgatggcgat aatgacaagg gaacaggaac      5100
     ttccaatata tggacagccg actgcaaggg acctgaagag tttaattggg aaaatgatga      5160
     accaacagca ataaaagtac acataccaca aggaaccacg aaaccttggt taacattcat      5220
     gatagacaat ggagcaagtg taaatctaat caaattaagt tttatacacg atgacatgcc      5280
     aataaatatg aaagatgtga ggaatcttgg aggaataacc acgggaacag taccgactct      5340
     aggagcagtt tatttgctta tcagaaatac accagtgaaa ttccacatag tgacagacga      5400
     ttttccgaca ccacacgatg gactattagg aagaaattat ttaaagaagg aagaggctgt      5460
     catttcttat tttaacaacg ctctaatggt aggcggagac gtgatgcacc caatgccatt      5520
     tctgggacaa gaaaaagaat acagagagaa gagaaaaagg gcacataatt cttacaaaac      5580
     cagcaacgtg ctacaagtcg aagacaagaa agacgataaa gaagcacctg taacagatgt      5640
     atccaaaaat gagaagacac cagcaaaaac gaaacatgtt ttaaaggcca gaactcggca      5700
     agttgtaaga atcaatctaa tcagaagtga attaaaagaa ggatacatac ccagaatcga      5760
     tgtagggaat gaaaatgtat ttttgggaga aggagtagta attaacgaca acaacacctg      5820
     caaaatgatg gcgattaata cgagtgaaga agacgtcatg atagaggtcg atgccaaaga      5880
     attaatacca tttgacacgg agccaaattt tctagaagaa acagacagcg aatttaatgg      5940
     tgaagttata gtggacagaa ttaagaggct agagaaggtg aaagaatcaa ttagaagaag      6000
     tcacttgaat caagaagaac taaaaatagt ggaccgtata atagaagatt atttagatag      6060
     atttttatta ccaggagaca agttaccgtg tacagatatg atccagcacc acatacattt      6120
     agaggacgac atacctataa acacgaaaca atataggcat cctccgaaac ataagcaagt      6180
     cgtcagagag agtgtggaga agaaattgcg agataaaatt attagagaat cgaattcacc      6240
     atgcaactcg ccaatatgga tagtaccgaa gaagcctgac agccatggaa acccaagatg      6300
     gaggatggta atcgactttc gcgaaatcaa taaaaagaca atcagagacg cctaccctct      6360
     gcctaacatt gccgacatca tggaccaatt aggtggagca acatactttt cgattttcga      6420
     ccttgcaagt ggattccagc agataccaat ggcaccagaa gactgttaca agacagcatt      6480
     cacaaccctc aacggacatt atgagtatac acgtttacca gaaggtctga agaacgcaac      6540
     agcgacattt caacgcttaa tggaaaaggc acttagaggt ttgcaaaaca tagagatgtt      6600
     agtgtattta gatgatatta tagtctacag caaggacttg caagaacacg aacagcgaat      6660
     taggcatatg atggatagac taaggctcgc caaactggta ctgcagccag ataaaattga      6720
     attttttaga cgagaagtag gattcctagg acacataata agttccagag gaattgaacc      6780
     aaatccggaa aaggtggaag caataacaaa gttacccaca ccaaagacag caaagaatgt      6840
     aagaacacta ctaggaatgt ttggatacta caggaagtac attaaggact ttgcgaagat      6900
     agctaagcca ctaaatgacc tgctcaagaa aaacgtaaaa tttgaatgga cagaagattg      6960
     cgagaaaagc taccagatac tgaaagattg ccttgtaaga gaacccatat tacaattccc      7020
     agacttcaac aaggagttca cactgaccac tgatgcgtca gattacgcaa taggagcagt      7080
     attaagccaa gaaaaggacg gcttcgatca cccagtacaa tatttgtcta gagcgctcaa      7140
     caaagccgag agaaattatt caaccacgga gaaagaatgc ctcgcagtac tttacgcctt      7200
     gcaccagttt agaccttatt tattgtgcag aaaatttaca ctagttagtg accacgaacc      7260
     actaaactgg atgcacagca gaaaagaccc aggccaaaga ctcatgaggt ggatgtttag      7320
     attcaccggg tacgagtaca cttttaagta taaaccagga aagctgaata aaaacgcaga      7380
     tgcactatca cggaatccac cagaaatgac tgaagaagag atcaacaaaa atctacctag      7440
     tatcaaaata atggtaatag aagaaaaaca aagtaaacaa gaaaaggcgg cagcaagtgt      7500
     agcaaaacca gccaagggaa ttgtgcaacc acgcaccagg atacaatcaa caggcgacat      7560
     agcaaataaa cctagaggaa gaggaagacc cataggagcc aaaaccaata aagaggcacc      7620
     aaagttggag catagcgtga tagctcaaag aactagagca agacgcgcac aagtacagag      7680
     tccagtggga cagtacatca aacaaggagc aatacccaga gtacccaaac ccgttgcatc      7740
     aagaaaagcc acaaaaccag gaaaaccagt gacagctaaa cccacagctg aaacatcgac      7800
     tgaagcgtca acagcagaaa ctagctccat tcagctgaag gaaatcccag aaagttcaac      7860
     cgatgcagac tccgatacat cgatgacagt caacccatct agacgatcgt ggttatcttc      7920
     gacaaccaac gaagacaccg actcagagaa gccaccgata ccagacccaa ggtatagtgg      7980
     actacgacaa gaagacacag agacgacgga agaagaaaca gaagatgacg aagtattttc      8040
     tttagaagga aaccaagata aaactataag caacattgca atagaggtca gcgcaataga      8100
     aggatccaac acagaagaaa gttccgaaga cgaatcaatt aagaacctat cagtaaagac      8160
     gactctaact agggaagagg tagaagaagc aagcagaaaa tttgaagaga gtatgaaaag      8220
     atatgaaatg gataaagaca ccaataccac agaatcaggg acagaaattg cgatacagct      8280
     acagataccc tcacactttt cagatgatga tgaagtagca gatgaagtac gtgaagcaat      8340
     ctacacatcc gacccacggt ttcaaacaga agaagaaata gatatagata atgtatggag      8400
     aaaaagcgtg cagaaattaa taaaaagagc acgacaaaag ctacaggaga ccacaagaga      8460
     agaaaactca ggaagcgact ccgacgtcga aagcctggct gacataatta tgccgccgcc      8520
     aaggaaaaca ttatctgtga ccccgacgat aacaagtggt agccctacag ccaagagcac      8580
     accacaaaat aagacgaaag cacgcaggaa attaggagta ttaagtgaaa tagaagcaga      8640
     agatggatca ataatagaca taagattttc aaaaccgcct gaaataacaa tgccttttct      8700
     cctgcctaca ccaccagacc tagagccact aaacaaagac tacactccaa cagaaaatga      8760
     tcatgaatcg gaagatgccc caacacacat aacattcaag aagattcccc agaacataat      8820
     caccgtaaga gaatgcatca cgcacaaaag agataacatt gttcactttc tatcggcaga      8880
     ctgcgacaac acttggccag taaccagatt attagtagaa atcggagcca tagacttaac      8940
     gaaaatcaag agtaaaaagc caaagatagg ccaaatccta gtcacgccat tacaaaaaac      9000
     atcacatatt cacagtaata atraaagaca aatgcttcaa cgtaataaaa atagaaaatt      9060
     taaacaaggg acttcggaat ctaaaagaaa cactcatcaa taaaaaaatt acaagtttcc      9120
     gaatagcgag aaaaggagac atattagacc aattagaatc accaataatt ttagacgtac      9180
     tctacaaaca ttttcacgga agcagaataa gagtgacaat gtgttatgga aaagcacaag      9240
     taccagctga aaaacacaga aaggaaataa ttagccatct tcacgacagt ctaacaggag      9300
     gacacaaggg aatcaatcaa acttaccaga aaataagaga acgatattat tggccaggaa      9360
     tgaggaacga cgttcaagac tacattcgaa gatgtgcaga atgtcaagag cagaaaatag      9420
     agagattcaa aactagagag ccgatgataa taaccgatac accgatagag gcttttgaca      9480
     aagtatcgat cgacacagta ggaaaactta agatgacccc gagaggaaat tgccatctat      9540
     tgacaatgca atgcaaccta accaaatatt taatagccat acccatcaaa aatctcaacg      9600
     ccacaacaat agcagatgca ttggcaaagt atctcatttg tcaatttggg gctccgagag      9660
     ccatactctc cgacagagga accagttttc tgtcaaaaat agtggaatca ttattgaaat      9720
     tgttcaaaat aaaccattta acgacgtctg gatatagacc tcagacgaat gggtcactgg      9780
     aaagaagcca cgccccactt atagagttca ttagaatata ctccgaaagg tatgacgatt      9840
     gggaccattt aacaccattt gcaacattca cttacaacac tagtgtacac gcagcaacta      9900
     atttcacccc ttttgaactc gtttacgggc gaatagcgcg tttccctttg agaataccat      9960
     ccgacgaaaa actaaaaacc tacaatgttt acatgcgcga cctagtatta aggttagaag     10020
     aaatgaaaat tttagcaggc gaaacccaaa tagcgaataa aattaaaaca aaggacaggt     10080
     atgacgagaa agtcagagcc tttaagggta gagtaggcgg atacgcgaga ctaataaatg     10140
     aaccccgtgt aagcaaattt gatgcgtata ggaataaacc attgagaata atcgaattct     10200
     taggtaggaa aaatgtcctt ctagagtacc cgaatggaaa gcgcatacga aaacatatag     10260
     ataaattgaa agccgtagag gataagtccg ataacgagga ttcagactct ttcaactaat     10320
     cgataaccat gttacaggat gaaaatttta gaaataataa taataatatt taatctactc     10380
     aacgtgagga gatgcgaacc catgtaccag atagaacccc taaaccccaa tcccggaata     10440
     tacttcgaga agctggacgt gatcaggatc aaaaaggcga cgtggaagct caacatctac     10500
     attgacgtcg aggacttcat gcagacgcac aacgcaacgg actcgtacaa agaaatattc     10560
     gagatctgca agaaagtaat ggaagaaaga aaatgcagac acgccctagc cattgaccta     10620
     ctgcaaataa aagaacaaga attagcaaag acccaagaaa agataaaaga gacaatagca     10680
     agtctaggac acacacagta ccccacagca cgaattccaa gaagcatcag gacaaagaga     10740
     ctagtaccac taggcataat tggaagtata agtagcagtt tgttcggact cgtgactaac     10800
     gacgaagtgg acaacataaa taaaaatata gaccagctct tccaggacca aagcaaaatg     10860
     gttcatttac tagacgagaa ttcccacata atctcagcaa aatttgagga attatacaac     10920
     ataaccagca accaccagaa agtgttgcaa ggattcgaaa aagaattaac aaagacgatc     10980
     aaaacaatac tacgagaaaa agatcaaatg aagtaccaag ttgaagtagt aatatacgtt     11040
     aaacgactag aatcgacatt ggaccatgtg attaaaagta atgagaaatt actagaaatc     11100
     ctacgaaaat taaaagaagg aaaagtacac ccagacctta tgaaacagga catggttcaa     11160
     caaatgaaca tggatgtaaa aagagtgagt caagatttag aatttccacc accaccagag     11220
     cacatgagag ccgaagaatt agccagaata tcggaaattg acgccattca ccagaatggg     11280
     cgaacattag cagtgctaca tctacctcta gtagatcgca tgccttatca attgtacaag     11340
     atgcatccta ttaacatacc acaaaacatg aaaaatgaaa cgatgggaca agccttcata     11400
     agaccatcac atgaatacat cgccattagc tacgatcata ccagatacat aaaattcaat     11460
     gaggaccaaa gacaaatgtg cattaaaacg cactatgcag acatatgccc aatactagga     11520
     gcactcagga atgtcccaga atcaagagac tgtgaaataa cattgctctt gaaccccagt     11580
     caaaaggcca ttacacaatg tgatatacga tacagactga gcgaacaaac tcagtggacg     11640
     tacctaaatt atgacaaatc atggctctat tcaacaattc gaccagaaat actaaacatc     11700
     atttgccaag acaaacatga aaacaaggtc acgataaaag acgcaggaat cgttcacata     11760
     gcaccaatat gcataggaac aacggctgag gcgaccatca ccggagaagt taccaggaac     11820
     accgagttta cctacgtgta caaaccagaa ataaacttaa aaataacaga tatttacccc     11880
     ctactgaatc aagaagacac cagtttagaa gtgcacagct cagaaaacat agatgtgcta     11940
     ggaccaaata tggccaacaa tgacggaagg ccattgcatg aaatagtcag caaactaaga     12000
     gaaataggcg aacataaacg acaaaactac agtacaaaca cagtactata tggaagcatg     12060
     accgtccaat taataatagt aacgataata ataattatca tcataaagat gaagtgtcta     12120
     agaaaatggc gctgcccaaa gaataagaag cgcagaaacc catcaccgag aataaacacc     12180
     aaaagacgaa agatcgaaac aaaagatgag gaaatcgaac tcgaagacat tctaggcagc     12240
     cataaaaacc acgcaatcct gcgactagac cgcgaaaacc ctaaaacgaa cgcgcaatcg     12300
     acaacaaaga aatttgcact acccaaacaa gaagcagaat gctcatgagt gaatgaaatt     12360
     aaatttttga atttccagga cgcttgtaca tagcaaaaca atgcttaacc aatcaaaaat     12420
     tttttttctc taacatgatt gatgtaatct atttgcagac aaaggaatac acaatggact     12480
     ttagaccaag aacaaacatt tcaatgttct gcgatgtaga cataccacta tcaaacataa     12540
     taagagaatt tgaaagagta ggagaacccc agaacgcccg tgtagaaaaa cacagatatg     12600
     aacgagagac caaaaagata acgctatctt tcaactcaga aagagagata gcaaaagcat     12660
     atgaactcag atccctatta gccaagcaaa ataaattaaa gaggaacagc aagagagcag     12720
     caccatacca aactcccatg ataaccacag gaccaaaaac agcaatagga gatttgatag     12780
     acctcactcc aaaagaagaa ccaacagtta gatctgaagt acacgtggtt aatcaaccat     12840
     caacacctca accaatcagg aacagactgt tctgcctact gccttgggac ggcaatgata     12900
     gagagaaaga cgaaatgttc ttcagacatt tcgcccagtt cgggacacta gcatactacg     12960
     aaacagtcag agacaaaaag ggacgtttgt catacggata cgtgcaatat ttcacacaag     13020
     aagacaccaa agccgccaag gaagagagtg acccaatgta caaagcaaca tttgccgaac     13080
     cgcgaagact accacgtgca gcgcaaggaa ccgcaaatac taaattccat gaaagatgca     13140
     aacagatgat agaagtagaa atatacaact tacatgaaat aacatgcaaa aagcaaatag     13200
     cttggaccca agacaatgtc agtgaagacc cactgagcaa gttacagcca ctacaggaga     13260
     caattatgga attaaaagaa aaaatagcaa aactggaaaa tcaaaaggaa aacaaccgac     13320
     atccaccaac acccaggaca aatagagtga gccatgaaag acccaagacc ccagaagcca     13380
     ccctccctga cctagatgaa aatgatagca gtatgagcat agaataagac agataaattt     13440
     acattttgcg accgtgttat ataaccataa taaacaatag ttaggaccaa tgaccctgta     13500
     tgaatgaatg aatgcatgaa cgaaaataca tcgcatgaat taaaataacc aaatacacat     13560
     aacatataat tatcatacca ctctctttga attattttca gatatggacc aagttttgaa     13620
     aaatatcgtc acctcaatcg tcttcgacga agttttggac catgtcacaa tctgttttga     13680
     ccccgcggga aaactcccta tggtaatgaa gctattgaac agttatggac caaacaacac     13740
     cgtcacgttt gaaattattc caagaggacc acaccatgac tcagcgagat taactattaa     13800
     gtacagaaca cggacaagcg cgacgagact cagaagcgac tataagacat ccagaacaga     13860
     ggacaggatg acagtagaac agagagtaga agcaccgact gattcggaca gctcagacac     13920
     agacgacgaa catagcagca gcgacagcag taccactgac ggaaccgacg gaacggacaa     13980
     cactagcgac actcctgaaa gcgacgctaa cgacgaaaat gacgaagtta ttttaaattc     14040
     agacgaagat gtcccacagc aagacaatga caataacgaa gacaacatga acagcgacag     14100
     tgacaacgcc acgggcaacg acaatgacca catcccagac aacaatgacg acaattacgg     14160
     cagtaatgac atcgacaatg cagacaacaa cgatatcaac agcgacgaca atgttaatga     14220
     taacggctac cccttgcagt acaatcccca aaacaacgtg gaattactca agatgaacct     14280
     gacggacgct tatacgataa cagctatata cagaggagac acaattgacg cagaggcatt     14340
     gttcagacag tacggaccat gccacacaga acactacatg tccacgacag acgacactaa     14400
     agccatatcg acacggtacc agttagacag acatgcacgg aaaataataa atctgtacag     14460
     acaatatata caacggacag acgaggacgt gcaaggactt cgacggcaag aacgagaaca     14520
     gggaccaccg acaacagaat acgttagatc ggacgatact atttgtgtac gagtaccgcg     14580
     gacagtaagc aaacaagaac tgacggaaat atttgcaaca tttggagaaa tagctgacat     14640
     acgacgcatc aaaccgaacg acgaagacga acgttataca gcatttatac aatacagaca     14700
     caaggacagc gcatacaaag cagtaacaga aactgacaat acatacttac cgaaatgggc     14760
     ttataatcga agacaacgga cgacaaaacc agcgacgaca caggaaaatg cacaggagcg     14820
     acagagaacc gaaggaccac aggaacccgc acagagacaa agacgatgga cgttggaccc     14880
     cgccaacaac acaaaactgt atgttctcgc accacctgac acgacacaac aggaattcag     14940
     agcggacttc ataaaatacg gagaagcaat acagatagag ttaacgaacg gaaaaaagga     15000
     gaataatgaa aaagtaggat acgttattta caaggacaaa atagacgcca tcgacgccaa     15060
     actaaacgga ccacgaaaat acaaaattga ctggaagtta acgccacaga ctactgagac     15120
     actattacat tttacatgcg gagaccaaat accgatacag agttttacag accacacacg     15180
     cgactgcacc acaactacac tacgacgacg gctacaagac aaaaaaaaaa gaacaaccga     15240
     gtaccagcag acaagccgac gagagacaga atgctgacac agcagggaca gcaacgcagt     15300
     caacaagagc accagtctca gtacacagag ccttatacat cgactacagc tcatcaagtg     15360
     atgaagagtt aaatgaagta gaaatagcca gatcaatacg acagcgacaa ctgaccatag     15420
     acaatagaca acatcaaaat gagagagcag atgaggcaga agcaccagcg aggcacgagg     15480
     acgaagcagc taatgagtta cgacaagaac tggacaaaat tgacttcaag aagatattag     15540
     acgttagttt ttaagtgacg acaccgtgac gctagtttaa gttagattta agaaaccaag     15600
     agtgccataa aagttttgta gtcaataaaa gatgcagaac ataagtatta ttgaaccaag     15660
     ttaccactat tgtcatctaa taaataaaat actgttttgt actacctttc ataaaaaaaa     15720
     gagagaacat tttctttcac tgaccaattg acctacatcc aaacaataca ccttaatata     15780
     atataaatat taaactatag gaactaatat catatataat ataaacgaaa gcgaatctac     15840
     ttactaacac aaatgaaata tagtattagc ataatataca gtagcaggtt aggacatata     15900
     tttagattaa tattaggcaa cattaacagt aatagttaaa tttatacagt aaggttaaag     15960
     tgtaccagaa catcatcaac gacatgtgtg acagcaaggt gaaaccaaaa caaattacaa     16020
     ggtaggacaa aactaaagag aatagattac ccaagataga acgatccatc caaaccaatc     16080
     atcccacgca agcaaaaggt gatgcatttg aagaaattcc atgtatcaat gagatacaaa     16140
     gaaagcacaa ttgccggttg cgtaccagta gcttccagaa ttcttttctc aataaaagca     16200
     gacctgaccg tgagacctct atatgaatgc tctcgacatt caaagagaaa ggatatgttt     16260
     tctcttctta atcaagcgcc gcaagggctg attaatatga tcatgtgatc atagaggcaa     16320
     gggaccaagg accgcaccaa ttatttaaaa gcataggcac acatcaacag ctacaactta     16380
     gaacagctga tagacacctg aaaaagcttg atcctgccca aattccaaaa aaaaaaaaaa     16440
     aaaaaccttc caagatacct catacaactc attgcccaaa atgcatctca caacaccgat     16500
     attaaatcag taaatagcag gttagaactt taacctcata ggacagttcg ttactcagtt     16560
     ttggtttctc attgtgtcac cggtgtctga ccatttaccc ttatatgtgt gtgtttgtcg     16620
     aggatgacaa acgtctgcaa gggggggagg a                                    16651
//
ID   Gypsy-18-LTR_NVi repbase;    DNA;    INV; 847 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-847
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 774-774 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 847 BP; 263 A; 179 C; 164 G; 241 T; 0 other;
     tgttaagtga cgaagttcct ggataaatta tttagaaaca ttatataaaa attacacaaa        60
     gccagtaaaa aagaagatcc agaaacttcg acgcttaact aagcctcgaa ggaatgtacc       120
     cgaaaccaaa acaaacttct cctccctcgg ctgaagcgcg cgtgcacagc cgacgctgca       180
     gtttagccgt tgaccatagt attaggccca taaggcctaa tgagtaagac aaagagcgcg       240
     gctaggctga agtaagaaga gaggagaagt aagtaccccg cgtgggagaa agcttcgact       300
     ctctctctca agcatcacct cccccgaaac gccactccag ggtgtgcgct cctagagaaa       360
     ggacgctaat tttaagagtt tagattttga gtaatttgcc tttgagaaat tcaataagtt       420
     ttgtttcatt tgagtgtctg atttaatttg tgttttgata agttgataat aaacatcact       480
     gcaatccatg tgttgagttt tggaaaataa gtcattcaga atacaaccaa ttttgagcca       540
     tcctccgttt tgctaaaaca tcttgccaaa aaggagatct aaaccccgca atcttttccg       600
     agcagtcatc ccagtttttc tgagcatcct ttcgggttaa attatttctc aaattccaga       660
     agtccacaga acaaagtaag tagcatttaa ttcaatattt ctgaactttg acatttcggt       720
     taaatcaaac agttctgcct cgacaaatta gtgttctcac tgatctcccc cgtatgggag       780
     agtagctaag cgcccacgtt ttaataatat tttattgtta gctggtggaa tcggttctat       840
     cctaaca                                                                 847
//
ID   Gypsy-180_AA-I repbase;    DNA;    INV; 7401 BP.
XX
AC   supercont1.157;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-180_AA_;
KW   Gypsy-180_AA-LTR; Gypsy-180_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7401
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.157; Positions  768348  760948.
XX
CC   Positions [2971-3474] - Reverse transcriptase
CC   Positions [4540-5016] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..2308
FT                 /product="Gypsy-180_AA-I_2p"
FT                 /translation="MDYTHLTDEEVTYELALRHVVNLGPTTHRGKVLRLKA
FT                 LIQEENLRDSKPTSSEHVMSSQSNIELCESQIQQLHISTEAAIRAADNAAL
FT                 SHIRTRLYHYRDRLKLIRPPSELRETHGMLTVHVDVLLNKICGTSVVSGVP
FT                 RSESVVSQAPSTGAVRRSSGENEGAVGGTTDATIPVGDSSRQDSTPPPVTS
FT                 FSGGQGRGLLFSSSFRDRGNEDTGEREFGQQAASPPPPYHPRDRNPWNSTT
FT                 REHQSLETRELQARITEMQEREQRMREEYYRMRDDLERLIRRERPAPERAD
FT                 ERRIQKAVHNWPFKFRGEKDTTSLNVFLDRVETFARSEGMSDATLLSSIKH
FT                 LLQEDAIDWYARATSQNLLRTWDQFKREIRREFLPSGYSQILRLEASFRFQ
FT                 GREESFAKFYRDISALFRFVDPPIPNDEKFFLVKKNMNENYAAIVTAARPR
FT                 SLEEMVEVCTGYDETKMLLNRQRRIPIPHSALLEPNFATPVATNRPPPIQH
FT                 QQQPHRFSRVHAVELEENHHEREAGEEQCEDAWQHTIDELVEQVNALKMNL
FT                 ERRSTRPSFTTRDERQFRSTDRLNRTEANVLGAGRQQARETQAQQQRPQAV
FT                 PYELRQPQQQPEQVQRGQGWQARQWTFRTVEESNENNRRSYRLQPEPVSQP
FT                 ESHHEEQQGAPNNQRLAMVCWNCDEEGHRFMDCPKPQAILFCYRCGRKGYS
FT                 LRSCFTCRTDAVNYPAENQQ"
FT   CDS           2266..5388
FT                 /product="Gypsy-180_AA-I_1p"
FT                 /translation="MPHGRGKLSSGEPAVEGSSSPHNFGDPSVIPEFDNIN
FT                 SVIINLGSDNRPHAVISVLGKELTALLDSGANCSLLGGARAKLAEECGLQK
FT                 GTVCGGIKTADGTKHRITNFVYLPIVYNNRNEVLPVLLVPSIPDCIILGMN
FT                 FWEKFGVKAVCCTVESQQEEEEGSEEQEMKQLSPEQKRRLEQAIQKFPKAV
FT                 EGKLGRTRLYEHRIDVGNAPPRKQRHYPMSPYVLQEVNREIDRMLALDVIE
FT                 EAQFSPWNNPLVAVKKKTGQYRVCLDARHLNSIMVNEGYPIPQIAAITNNL
FT                 RSSKYISSIDLKDAFWQLPLHSGSRPLTAFTVPSRGHFQFKVVPFGLCTAS
FT                 QALARLMTHLFADLEPLVFHYLDDIIICSETFKEHIALLEEVARRLRQANL
FT                 TISAEKSKFCRKSMKYLGYVIDEQGWRVDDEKIQAIVQFPTPTTRKEVRFL
FT                 GVCNWYRRFIAGFSQLAAPLTNLTSGKAKFRWNPIAEEAFLKLKAALVSAP
FT                 VLAMPDYSKPFAIACDASDTAIGAVLTQEINDEEHPISYFSQKLSASERKY
FT                 SVTERECLAVIRAIEKFRGYVEGIRFVVHCDHAALSYLKSMKNPTALMSRW
FT                 LLRLNAFDFEIRYRKGSINVVPDALSRTVAEAVLTVDQVQDPWYKQLIERV
FT                 KSEGDQFPDFRIANDTLFKNCRCKDEVGAVYHKWKQCVPKEERLQLIRRFH
FT                 DEPAAAHLGFYKTWHKLQAHYYWPQMQLEINDYVRNCATCKACKAPGKRMM
FT                 PQMGNPKPAKTPWEMISVDFVGPLTRSKRGNTVLLVVVDWVSKYVIVKPMR
FT                 AADSQKMVEFLEEEVCLKFSRPRLILSDNGKQFESMVFKSWLAKHKIGHMK
FT                 TAFYCPQVNNAERVNRVVVTCIRALLDGDHREWDEKLPAITAAITAARHEA
FT                 TGVSPHEANFGRNLLLHTDLYTQQELNTPEDPKVAQDLRLSAIRRIQKLII
FT                 ERIKNSHQRAKQRYNLRTRTVAFKAGDLVWRRSFVLSSKADQINSKLEPKF
FT                 VPAIVKEILGANLYVLEDVLSGKKGRFHAKDIKAD"
XX
SQ   Sequence 7401 BP; 2115 A; 1854 C; 1976 G; 1456 T; 0 other;
     ctggcgccca actgaaaatc cacaacattt agctaccgtt cagcgatttt tttggttttg        60
     ttgagctttt tggttttgtg catttgatta tccggccttg ataatcaagg atattttaac       120
     ccttacgcat aagatttgat attaagatat ggattataca catttgactg acgaagaagt       180
     gacttacgag ttggctttac gccacgtagt caacctaggt ccgaccaccc acagagggaa       240
     ggttctccgc ctcaaggctc taatccaaga ggagaatctt agagatagta agcccactag       300
     ctcggaacat gtcatgagtt cccaatccaa tatagaactt tgcgagtcgc aaattcagca       360
     gctacatatt agcaccgaag cagccattcg ggcagctgat aatgcagctt tgagtcatat       420
     ccggacacgt ctttaccact atcgcgaccg tttgaagcta atccgccctc cgagtgagtt       480
     gcgggagacg catggcatgc taaccgtgca tgtcgacgtg ttgttgaaca aaatctgcgg       540
     gacaagtgta gtgagtggtg taccaaggag tgagagtgtt gtgagtcaag caccgtcgac       600
     cggtgcagtg agacgaagca gtggcgagaa cgaaggagca gttggaggaa cgacggatgc       660
     cacgattccg gtaggcgatt cttcgaggca agactccaca ccaccaccgg tgacgtcatt       720
     ctctggtggg caaggacgag gattgctgtt ttcgagttcg tttcgagacc gaggcaacga       780
     agacactggg gaaagggagt ttggacagca agccgcatca ccaccacctc cctaccatcc       840
     ccgggatcgc aatccatgga actccacgac acgggaacac cagtcgctag aaacccgtga       900
     actgcaagca aggatcacgg agatgcagga gagagaacag cggatgcgcg aagaatacta       960
     ccgaatgcga gatgatttgg agcggttgat tcgccgagaa cgacctgcgc cggagcgagc      1020
     ggacgaaagg agaatccaga aggcggtgca caactggcca ttcaagttcc gaggcgagaa      1080
     ggacacgacg tcactcaacg tgttcctgga tcgtgtggag acttttgcga ggtcggaagg      1140
     aatgagcgac gctactcttc tgagctctat caagcacctt cttcaagagg acgccattga      1200
     ctggtatgcg cgagcaacgt cacagaacct tttgcggacc tgggaccagt tcaagcgaga      1260
     gatccgcaga gaatttttgc ccagcggtta ctcccaaatt cttcgtctgg aggccagctt      1320
     cagattccaa ggaagggagg aatccttcgc gaaattctac cgcgacattt cggcgctctt      1380
     ccgcttcgtg gatccaccaa ttccgaacga tgagaagttc ttcctggtaa agaagaacat      1440
     gaacgagaac tacgcagcta tcgtcacagc agcaagacca cgttcactgg aagaaatggt      1500
     agaagtttgc accggttacg acgagacaaa gatgctcctg aataggcaac gccgtattcc      1560
     aattccccac agcgcgcttc tcgagccgaa cttcgccacg ccagtagcaa ccaacagacc      1620
     accaccgatt cagcatcagc agcagccaca ccggttcagc agggtccatg cggtggagct      1680
     ggaagaaaac caccatgaaa gagaagcagg ggaagagcag tgtgaagacg catggcaaca      1740
     caccatcgac gagcttgttg aacaagtcaa cgcgcttaag atgaacctgg agcgaagatc      1800
     gacgaggcca agttttacca cacgcgacga aagacaattc agatcgacag acaggctcaa      1860
     ccgaaccgaa gctaacgttt tgggggcagg gcggcagcaa gcaagagaga cgcaagcaca      1920
     gcagcagcga ccgcaagccg taccatatga actacgtcag ccacaacagc agccagaaca      1980
     ggttcaaaga ggacagggct ggcaagcacg acagtggact tttcgcacgg tagaggaatc      2040
     gaacgaaaac aatcgaagaa gctaccgtct acagccagaa ccggtcagcc aaccggaaag      2100
     tcaccatgaa gaacagcaag gagctccgaa caatcagcgg ctagcgatgg tttgctggaa      2160
     ctgcgacgag gaaggtcaca gattcatgga ctgtccgaag ccgcaagcga tcctcttctg      2220
     ctaccggtgt gggcggaaag gctactcgtt gcgcagttgc ttcacatgcc gcacggacgc      2280
     ggtaaactat ccagcggaga accagcagta gaggggagca gctctccgca caacttcgga      2340
     gacccctccg ttatacccga attcgacaac atcaactccg tcatcatcaa tctcggaagc      2400
     gacaatagac cgcacgccgt tatttcagtg ctaggaaagg aactcacagc tttgctggac      2460
     agtggagcga actgctctct gctaggagga gcaagagcca agctagcaga ggaatgcggt      2520
     ttgcagaaag gaaccgtctg tggtggaata aaaacggcgg acggcacaaa acatagaata      2580
     acaaatttcg tctatcttcc tatcgtatac aacaaccgca acgaagttct tccagtgcta      2640
     ctggtgcctt ccattccgga ctgcatcatt ctcggaatga acttctggga aaagtttgga      2700
     gttaaagcgg tgtgttgcac agtcgaatcc cagcaggaag aggaagaagg cagcgaagaa      2760
     caagagatga agcagctgag tcccgaacag aagagacgtc tagagcaggc gatccaaaag      2820
     ttcccgaaag cggttgaagg caagctagga cgtaccaggc tgtacgagca tcgaatagac      2880
     gtaggaaacg caccgccacg gaagcaacgg cactatccca tgtcgccgta tgttctgcag      2940
     gaggtgaata gagagatcga ccgaatgtta gcgctggacg tgatcgagga ggcgcagttc      3000
     tcgccatgga acaacccgct ggtcgccgtc aagaagaaga ctgggcaata tcgcgtttgc      3060
     ctggacgcta gacacctcaa ctccatcatg gtgaacgagg gctacccgat tccccagatc      3120
     gcggcgatta ccaacaacct ccggagcagc aagtatatct cgtccatcga cctcaaggat      3180
     gccttctggc aactacctct ccattccggt tcgaggccgc taacagcatt caccgtccca      3240
     tccagaggcc acttccagtt caaggtggtc ccattcggac tatgtacagc tagccaagct      3300
     ctggcgcgac ttatgacaca cctattcgcc gacttagaac cgctggtatt tcattacctc      3360
     gatgacatca tcatctgctc cgagaccttc aaagaacaca tagcacttct tgaagaagtt      3420
     gcccgccggc tacgccaagc aaatctcacg atttcggcgg aaaaatcgaa gttctgcagg      3480
     aagagcatga agtacctcgg ctacgtgatt gacgagcaag gctggcgtgt agatgatgaa      3540
     aaaatccaag caatcgtgca gtttccaact ccaacgacaa ggaaagaagt acgttttctc      3600
     ggtgtctgca attggtaccg acgctttatc gccggattct cgcaactggc ggctccgtta      3660
     acgaacctga cgtcaggcaa ggccaagttc cgctggaatc cgatcgccga agaagcgttc      3720
     ctcaagctaa aagcagccct agtttcggcg ccggtgctag cgatgcccga ctacagcaag      3780
     ccattcgcca tagcgtgcga tgccagtgat actgcaattg gagcggtgct aacgcaggag      3840
     attaacgacg aggagcaccc aatcagctat ttctcgcaga agctgtcagc gtcggaaaga      3900
     aagtactcag tcacggagcg agagtgtctt gcggtgatcc gagcgatcga gaagtttaga      3960
     ggatacgtag aaggaatccg attcgtcgtg cactgcgatc atgcagcgct cagctacctg      4020
     aagtccatga agaacccgac ggcgctgatg agtcgttggc tgctacgtct gaacgcgttc      4080
     gactttgaga tccggtacag gaagggatct atcaacgttg ttccagatgc tctctcgaga      4140
     acggtggctg aagcggtgct cacggttgat caggtgcaag atccgtggta caagcagcta      4200
     atcgaaaggg taaagagcga aggagaccag ttcccggact ttcgcattgc aaacgatacg      4260
     ctgttcaaga actgccgctg caaggacgaa gtaggagcgg tctatcacaa gtggaagcaa      4320
     tgcgttccga aagaggagag acttcagttg atccgacgat tccacgacga gccagcagca      4380
     gcgcatctag gcttctacaa aacctggcac aagctccaag cccactacta ctggccgcaa      4440
     atgcagctgg agattaacga ctacgtgagg aactgtgcga cctgtaaagc gtgcaaagca      4500
     ccagggaaga gaatgatgcc gcagatggga aacccgaagc cggcgaagac tccttgggag      4560
     atgatttcgg tggattttgt cggtccgctt acacgttcca aacgaggaaa tacggtgctg      4620
     ttagtagtag tagattgggt gagcaagtac gtgatcgtta agccaatgcg cgcagcggat      4680
     tcgcagaaga tggtggagtt cctagaagaa gaagtttgtc taaagttctc tcgcccacgg      4740
     ttaatactgt ctgacaacgg gaagcaattc gaatcgatgg tcttcaaatc ctggttggcg      4800
     aagcacaaga tcggacatat gaagacggct ttctactgtc cacaggtcaa caacgcagaa      4860
     cgcgtcaacc gcgtcgtagt aacctgtatt cgggcgttgc tggacggcga tcaccgagag      4920
     tgggacgaaa agctaccggc aatcacggcg gcgataaccg cagctcggca cgaggcgacg      4980
     ggtgtgagtc cgcacgaagc caactttggg cgaaacctgt tgttgcacac agacctctac      5040
     acacagcagg agctcaacac gccagaagat ccgaaggtag cgcaggacct gagactctca      5100
     gcaattcgtc gaatccagaa gctgatcatc gagcggatca agaacagcca ccagcgggcg      5160
     aagcagcgat acaaccttcg cacaagaaca gtagcgttca aggcaggaga tttggtttgg      5220
     cgacgatcgt tcgttctctc gtcaaaggcg gatcagatca acagcaagct agagccgaaa      5280
     ttcgttccgg cgatcgtgaa ggaaatcctc ggggcgaacc tctacgtgtt ggaagatgtt      5340
     ctaagcggca agaaaggaag attccacgcg aaggacatca aggcagacta agcgaatgtg      5400
     ttcaagctat gcaaacaggc ggtgcctgtc aacgagcaag caaaacgctg aagaaaacac      5460
     catcattggg cacaattaca gcgaccagga gggcagagaa gatcgatcct gactctgcac      5520
     ttccgttaca tcgatttgaa gacatcatcc acggggatct tcgttcctag aagcgagatt      5580
     ccggaccggt cgagctatgt acccaggcgg tgcctgtaga ccaacaacag tagcgatcaa      5640
     aaacaccatt ttgggagcat caaccacgaa gactgagtga gacgaaccgc tgcaatatta      5700
     ctcacctcag caacaccgat tgtgagtcga cagcaaggat ttccgttcat ccgagcgagg      5760
     ttccacaact ataaagctat gtccacaggc agtgcctgtc aaccatgagt accaagcttc      5820
     aaaaacacgt accaagcggg aaaatggcaa aagtcaggtg tgatgagcaa taacttcaat      5880
     atgactacct ctccacctcg acagtttcgt cagctttgtt gtagatcacg atcaacgcta      5940
     gagacagtac acgatttgcg atcccatcct tcagaaatca ggacaggcac agtagcaggc      6000
     aggagaaaca acaagcggta ccgaaatact tccatcgcgc caggaagcgt accgcgcgcc      6060
     gttcgcgaag cgggagaaat cgcaccctgt gtctttggaa acggggagca gggatctctg      6120
     cagtgcacca gctggctttc ggataggagg agtggagagt cggagatcga cgaccaacca      6180
     tcggttcgac gcggctcaaa gcttacggcc actatcaggc gcggcgaaat cgcatctggt      6240
     atcactgaga gaggaggagt cgaggcgagg cctacgcggg caagggagat tgggaccctg      6300
     aaagccatcg tgagtaggga ggctccaaat accaacaagg agaacgcagc aagacatcag      6360
     cctacagcgg gcgagggaga ttgggaccct gaaagccatc gtaaataggg aggctccaaa      6420
     taccattaca agcacctagc aaatcgacgg cctacagcgg gcaagggaga ctgggaccct      6480
     gaaaaccgtc gtgagtaggg aggctccaga taccaaaaac aggacaatga atcaagcgta      6540
     gcgacatccc gagaagcacc atcatcaagc catggcagca tcatgccaac caggaagaga      6600
     aacactcaca cacaaacaca cctagtggtc aggccgttag ccgatcgtga caaatcgagc      6660
     acatcatcaa caatacgacc accctcacta cacagagcta tgagtggcac cactacgaag      6720
     aaacgaaaca cgatctcggc aatccagcca atccacgact ggagcggtgc acacgaaccc      6780
     tcaagtgttt ccagtcaatt cgaatgcgtg gccaagggtt aaagatctgg gggtcgtcat      6840
     ggaatcttca tcccaacggt aacgcgacca ggggcgcggt aaaaccctat ttctcgggcc      6900
     catgacgatt tagtcgcgga aatgcttctt ttctcagtat atccgcacaa accaaaacaa      6960
     aaccattttt ccttagtctg taaatatagc ttcttaatgt ttagtgtgca attaagccta      7020
     ttctagtcaa cacagtaggc tagaatccaa tttgaatgat gatttgccgt aggatttgat      7080
     gaagctggac aaggactttg gtcagagacg atttgagagg ttgaaaaatc tgccaggcgc      7140
     agctggcgta aaatttggta tagattaaga ttatgtaatt aaggcgatag tgaagatctg      7200
     atttggcaag cagccgaggc ttgcgtatga tgaagtttag tagagttaag cacacgatgt      7260
     aacttgaggt ctgctcgaga gcttagttga ccgacttgtc tctgaccatc atcctaggag      7320
     gatgattaaa gatttgttgg aatttttcat gaattgtttg atcaccaatt catgaaaaat      7380
     tcttccgcta cggtagagtt g                                                7401
//
ID   Gypsy-180_AA-LTR repbase;    DNA;    INV; 1654 BP.
XX
AC   supercont1.157;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-180_AA_;
KW   Gypsy-180_AA-I; Gypsy-180_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1654
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.157; Positions  760947  759294.
XX
SQ   Sequence 1654 BP; 464 A; 389 C; 443 G; 358 T; 0 other;
     tgttacgttt tgtatgttta gcgatattgt atcaggagaa aactttgaca accattaaga        60
     ttataacaca aaaacagtaa ggcattgctc cgccagtcaa agtttaagca ccactgcgac       120
     aaccatccgt caccagcctg ccaaataaca tcagcacagc aaatcattct caatacataa       180
     gcgcactcaa gtacataagg gaacgaagac gaaacaactc cacacctaac agcacggatg       240
     gaagagccgt aggagaagaa gcgatctcta cggtgacgtt gctcagcata tgcgggagag       300
     tgattgcccg aaggccgaca cacacacacg ccaaccaaag ccagcacgat tgagctaggg       360
     cgagaaagat ttttcatcgt cgttctattg tcagtcccca tgatgcgatc ggtcggttcg       420
     gtttaataag cggattttgc cacaaaaagt tagtgccgtt taaagccggc gaaagagaac       480
     ttttgcagtt ttccatagtg aaaggttaca tagttgttac cggccgtggc ggaaaacatc       540
     cggacgcgaa aggcgccaga gctcatcatc gtcacgtggc catacggtga aagtaaggat       600
     cacggttttc gcggcaaata tcaacgacct agaaggcacg aagaagcatt ttagagtggt       660
     gagtcaaatt gtagattgac aacgaagtgg gagctaattt tgtacatcat tcaggccaac       720
     cgcttcgaaa ccgacgtgat tgtccgatca cgagatcatc gctggcatca ggacgggcac       780
     gcattgttca acaataagaa cgccgcaaat ccattgtctg ctgacgctac tgctcggatc       840
     gcgattccga cggaaagaaa gggggtaggt acgctacatt gtgtgggcaa aatggccgac       900
     taatccgttc ctgatttagg gacgattttg catccaccaa tagcgcatag ccactgcaag       960
     agccgtagga ggacctcgaa gcgagccagg ttggctgtcg cttccctcga agcacccaca      1020
     cacgacgaga aaccccttat tgggtatgtg tagccggcaa tcaagaacga gcagtcacta      1080
     accggcagaa caacagggtt ttttcgttgc agtttcgttc tttggctcat cgaaggaagg      1140
     cccagcgagt ctacactcag gggttcccaa caccgcggtg gaggatcgtc cgtagccata      1200
     tcagcgtttg acatttgaca catcggagga agagcggact gtgactcacg accaggggtt      1260
     cccaacacag tagtgcaagg tcgtcggcgg tgaatgaccg tcgagagcca gccgcttcag      1320
     ctgaggtggt gcaggagcac agagcgtgcg acgacggcga gcgcagaccg tcagaaagga      1380
     tgcggaggct ggtggagcta aaggcggcgg gagcataatg gccggtgccg tgagtaccag      1440
     caatctagga ttaagccact acatgtaaga agggatagaa tataggcctc gaggtcaagt      1500
     ttaggagtca ggcagtcatg atggcaccca atatatgcat ttaaaatgaa ttactcgttt      1560
     tgtgattgag ttggagccct ttgccttcag tgtttgtgcc gaatcccctt ttgataatgg      1620
     tagttatgct ctaccgggtc gggaacttgc aaca                                  1654
//
ID   Gypsy-181_AA-I repbase;    DNA;    INV; 5357 BP.
XX
AC   AAGE02024317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-181_AA_;
KW   Gypsy-181_AA-LTR; Gypsy-181_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5357
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024317; Positions   19011   13655.
XX
CC   Positions [4403-4852] - Integrase core
CC   'ACGTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2384..5332
FT                 /product="Gypsy-181_AA-I_1p"
FT                 /translation="MGDVKKAGVRVSSSTKDSDRRFLSYGSSTPLSVRGTF
FT                 TAEIKIQNRASFAEFYVVEKGQTCLLGDATAKQLRVLKIGVNVNSVEKKEP
FT                 FACIKNVEVHIHMEPDAKPVIQPVRRLPIPLEAKVNRKLDELLARDIIEPK
FT                 SGPTSWVSPLVVVAKANGGLRLCVDLRRVNQAILREHHPMPVIEQILARIG
FT                 NGTVWSKLDIKDSFLQVMVAAKSRDILTFITEKGLFRFKRLPFGLITAPEI
FT                 FQRVVDEILCGCEGTHWYLDDIFVEGETLEEHDARLEKVMTRLTERGVQLN
FT                 LEKCQFRVTELEFLGHKITEFGIAPSDSKVAAIIAFRLPTTEGEVCSFLGL
FT                 ANYLNKYIPHLATLDEPLRELTRKEVKFSWKSRHETSFQAIKHAMSDVRIL
FT                 GFYNTYDRTAVVADASPTGLGAMLVQTDSQGKDRVISFASKSLTETEKRYC
FT                 QTEKEALGLVWAVEKFQFYLLMRKFDLVTDCKALSYLFTPRSRPCSRIERW
FT                 VLRLQCFYYSIVHIRGDQNVADVLSRLSCTQVEPFDSAEEIIVQHIAVVDA
FT                 KAVAVSWEELVRESRDDAEITNVFECLKQNSTESLPVTYRIVSSELCDVEG
FT                 VLLRGDRIVVPVALRQRVLNLPHNGHPGVRMMKSFLRSAVWWPKLDADVES
FT                 LVKSCRGCVFVSSPDVPEPMLRRALPSGPWEDIAIDFLGLLPDGHHLLVIV
FT                 DCYSRYLEICEMSCIDSTETISRLREVFSRFGIPTLIKADNGPQFSSNEFS
FT                 TFCDDYGIQLVNTIPYWPQMNGQVERQNRSILKRLRIAQELGKDWRKELHD
FT                 FLLVYHATTGEAPSKLMFGRRIKSQLPHVPVHYDDEAVRDFDGLQKEKGKC
FT                 YSDRKRQAAFSNVKEGDKVFVKRMKKNHKLEADYSPEEYVVVKKTGSDVVV
FT                 WSRVSGKEFRRNVTHLKKIPEEQGTVQITSTEEFDHAIHRNGSDGQAPQIC
FT                 DTSQQQQVPLRYQRERQPPTKFKDSISH"
XX
SQ   Sequence 5357 BP; 1597 A; 948 C; 1347 G; 1465 T; 0 other;
     atttggcgac gaaggtgaat tcaaggtagg catttattct gaaattccgg gaagtttgaa        60
     gaagaaatgg ctgaaatatt tctggcggat gttatacatt cctcgagaaa agatggcgtc       120
     gtcgaaacga aaaaatctgg gcaagttggc agtgatgtcg ttgggttgtg tgagatacgg       180
     tgttgcaaga gggtgtacat gtgttggtag tggaatctct gagacatgcg attgagaaga       240
     atctatattt ttgagagaaa gttacacaaa aagaaaactg aaataggggt gatcatgtta       300
     taattgtgtt agaatcatta caaaatacaa agtgaattat gaatatgaaa caaatgaaca       360
     attaaattcg tgcgggaata cacaaaaagc ttatgcttag cgtgaggcac aaatttgtgt       420
     taatcaaaat agtagaatca aacgtcatgg tgatttacaa atgtttgggt gagagaaaag       480
     aaaaaaaaaa catcgtatgg gctgatcgtt atttgagaat gaatgctggt gtggggccag       540
     ttttgtacaa aatacaataa ttgtcatgag ggttgacaaa tgtttgtgtg agacaagaga       600
     aaaacatcgt gtgggtcgat tgttgattca gttgagattg aatactggtg tggggccagt       660
     tttgtataaa atgcaatatt taattgtcat gagggttgac aattgtttgt gtgagacgag       720
     agaaaaaaca tcgtgtgggt cgatcgttgg ttcagttgag attgaatact ggtgtggggt       780
     cagtttttta caaaatgcta taatgtcatg agggttgacc aatacttgtg agggacaaga       840
     aaagagatcg tttggggcga tcgataatca gcttaattgg tgtggggcca atttcagagg       900
     caagatactt cctatccatg aatctaagat cataagggtt gatcgaaatt cgtgagggac       960
     gaatatgaat gaatgagttg gacaatcaat cagggtaaac ggcccttcag tggaagaagc      1020
     ttcaatagtg gaggtgctac accaatggta cattcaccct aaggaagatg ttcaggcaag      1080
     attggagaaa attaaatatt tgtgacaatg ttgtgggaac aagatttgaa tttgagtttt      1140
     attatgagtg atactatgat aaatcaagcg ctggtgatat agtttaagaa ataaatatat      1200
     ttttttgttt atgttggaat gatacatgaa tggatggttt tgtcgacttg ttgattacag      1260
     atggatgata cgagacctat gccacaattc aggtgtgagg atatcgcaaa gtcaagattg      1320
     catcatgagt ggaaggattg gaaaagcgga ttggagagat acttcgatgc caatgatata      1380
     actgaccagt aaaagaaacg ggcgaagttg ttatatttgg gtggccctca actggacaag      1440
     gtgttcacca accttcccga tgggaacaaa tttccattgg ttgctacaga aaaaaggttc      1500
     tatgatgttg ccattgcagc attggataac tactttcaac cagtgaagca ggatattcta      1560
     gaacgtcacc gtttgcgtca aatgaaacag ctaccgggtg aaaagttttc acactatatg      1620
     gtagttaatt tattttttta aatcgtttcc aaaattctta ctttgaaatg ttttcatgca      1680
     actttaggtt cgtttaagac agcaagccac actgtgtggt tttgataagt actcgaaaac      1740
     aacgaagcag gtcctgactg agatgatgat aacggatgtc attgtagaag gttgcttgtc      1800
     ggtcgaactc cgacgaagga tgctgctgaa ggaccaaact ttagatgaaa tcgaagagat      1860
     tgcgacaggt ctggaaggtg ttgattctca aatacaagac ctaacgagaa agataagcga      1920
     cagtcaggac ggtaccaagg tgtatagagt tagggatcgt tccacaccgg ggttcaggcg      1980
     tcctccagtc catgcgtcta agttagataa aagtcgttat cgcgggcgtc agtttccacg      2040
     ctcaaatatt atttgcttta attgtggtag atcaggacat attgctacat ccgattattg      2100
     ccctgcaaaa ggtaaacagt gccataatag caagcgaatg ggccattttg acttcacgtg      2160
     caaatcgcgt cgaatttcgt tggaaaaaaa cacaaccatc accaccgagt aagaaagttc      2220
     gggtggttga gcaacaggaa tcacccagcc ctgatgaagg aaaagtttat tacgcttttt      2280
     tcaacggtaa cctcagtaac atgctaacgt ttgaagtggg aggtgtgtct ttgaagatgc      2340
     ttgtagattc tggggcagat gctaatttgg tgaccctcga ggcatgggag atgttaaaaa      2400
     agcaggtgtt cgagtctcca gttctacgaa agattcggat cgtcgcttcc tctcctatgg      2460
     tagtagcacc cctctttcag ttcgaggaac atttacggca gaaatcaaaa ttcaaaatcg      2520
     agcctctttt gctgaattct atgtagttga gaaagggcaa acctgcttac ttggtgacgc      2580
     cacggcaaag cagctccgag ttttgaaaat tggcgtaaat gtgaatagcg ttgagaaaaa      2640
     ggaaccgttt gcgtgcatca aaaacgttga agtgcacatt catatggaac cggatgcaaa      2700
     gcctgtcatc caaccggtga gaagattgcc tatcccactc gaagctaagg tcaatcgaaa      2760
     gctagacgaa ttgttagcaa gggatatcat cgagccaaaa tcaggtccaa cttcgtgggt      2820
     ctctccctta gtagttgttg cgaaggcaaa cggcgggctg cgattgtgtg tggatcttcg      2880
     aagggttaat caagctattt tgagggaaca ccatcccatg ccggtgatag agcagatact      2940
     ggcgcgtatc ggaaacggta ccgtatggag taagttggat ataaaggatt cgtttctcca      3000
     agtcatggtt gctgcaaagt ctcgagacat tctcacgttt ataactgaga agggattatt      3060
     taggttcaaa cgtttaccat ttggcttgat aacggcgccg gaaatatttc aacgagtcgt      3120
     cgatgagatc ctctgtggct gtgagggtac tcattggtat cttgatgata tttttgtgga      3180
     gggtgaaact cttgaagagc atgatgcgag gcttgaaaag gttatgacaa ggcttacaga      3240
     acgaggagtc caattgaatt tggaaaaatg tcagttcagg gtgacagagc ttgagtttct      3300
     tggtcataaa atcacggaat ttggaatagc accgtcagat tcaaaagtgg cagcaataat      3360
     cgcttttcgc cttccgacaa ccgaaggtga agtctgcagc ttcttagggc tggcaaacta      3420
     tcttaacaag tatattcccc atttggcaac ccttgacgaa cctctgaggg agctaactag      3480
     gaaggaagtt aagttctctt ggaaatcacg tcatgaaaca tctttccagg cgataaaaca      3540
     tgcaatgtca gacgttcgca tcctcggatt ctacaatact tatgacagga cggcagtggt      3600
     tgctgatgcg agccctacgg gtcttggggc gatgttagtg caaacagata gccaagggaa      3660
     agatcgagta attagctttg cgtcgaaatc actaacagaa acagagaaga gatattgcca      3720
     gacggagaag gaagctcttg gtctagtttg ggccgtcgaa aaattccaat tctatctgtt      3780
     gatgcgaaaa tttgacttgg tgacggattg caaagctcta tcatacctgt tcacgccccg      3840
     atctcgtccg tgttcaagga tcgaacggtg ggttctgagg ttgcagtgtt tctattattc      3900
     gatcgttcat attcgagggg atcaaaacgt tgcagatgtt ctttcaagac tatcttgtac      3960
     tcaggttgaa ccttttgatt cagctgaaga gataattgta caacatatcg ctgtggtgga      4020
     cgccaaagcc gttgctgtat cttgggaaga attggtccgt gagtctcgag acgatgcaga      4080
     aatcacgaat gttttcgaat gtttgaaaca aaactctaca gaatcattac ctgtaactta      4140
     tcgtattgtt tcctcagaat tatgtgatgt tgaaggagtc cttctgcgtg gtgaccgcat      4200
     agtagtacca gttgccctac gccaacgagt tctgaactta ccacacaatg gtcatcctgg      4260
     ggtacgaatg atgaagtcat ttctccgatc tgccgtttgg tggcccaaat tagacgcaga      4320
     tgtggaaagt cttgtgaaaa gttgccgtgg atgtgttttc gtttcttctc cggatgttcc      4380
     cgaaccaatg ctcagaagag cacttccttc tggaccatgg gaagacattg ccattgattt      4440
     ccttggcctt cttcccgatg gacatcactt gctggtaatc gtagactgtt atagtcggta      4500
     tctagaaatt tgcgaaatga gctgcatcga ttcgacggag acaattagtc gtttaagaga      4560
     ggtgttcagt cggtttggta ttcctacgtt gatcaaggcg gataacggcc cacaattctc      4620
     cagcaatgag ttcagtacat tctgcgatga ctacggtata cagctggtaa acacgatccc      4680
     gtattggccg cagatgaacg gccaagttga gcgacaaaat cgctcaatct taaagcgact      4740
     gcgtatcgcc caagaattgg gcaaagattg gcgaaaggaa ctacacgact ttcttctcgt      4800
     ataccatgca actacaggtg aagcaccttc gaaacttatg ttcgggcgtc gaattaaaag      4860
     tcaactacca catgttccgg ttcattatga tgacgaggcc gtgcgtgatt ttgatggtct      4920
     ccagaaagag aagggaaagt gttattctga taggaagagg caggccgcat ttagcaatgt      4980
     caaagaggga gataaagtgt tcgtgaaacg catgaagaag aatcataaat tggaagcgga      5040
     ttattcgcca gaggagtacg tagttgttaa gaagaccggc tctgatgttg tcgtctggtc      5100
     cagggtatct ggaaaggaat ttcgtcgtaa cgttacacat cttaagaaga tccctgagga      5160
     acaaggcact gtacaaataa cttccaccga ggaattcgat catgctatac ataggaacgg      5220
     ttcagatgga caagcgccac agatctgcga taccagtcaa caacagcaag taccgttacg      5280
     ttatcaacga gaacgacaac cgccaacaaa gttcaaagat agcatatctc attgaattaa      5340
     gaaagttatg gtggggt                                                     5357
//
ID   Gypsy-181_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   AAGE02024317;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-181_AA_;
KW   Gypsy-181_AA-I; Gypsy-181_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024317; Positions   13654   13427.
XX
SQ   Sequence 228 BP; 78 A; 29 C; 74 G; 47 T; 0 other;
     tgtagggtct gggaacactt ctagagtgaa tgagacgaga aggtagatgg agcaacaggc        60
     tgtgacttct gcagggacgt ggataggaga gtaggaagga agaggaaaag gagagagggg       120
     agtgtgagga gaaaagacag gaataaaccg ggctctggat tgtctatatt acgacagtgt       180
     aactaaagtg aatttaagtg ataaatccga atatctgact cctctaca                    228
//
ID   Gypsy-182_AA-I repbase;    DNA;    INV; 7079 BP.
XX
AC   supercont1.136;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-182_AA_;
KW   Gypsy-182_AA-LTR; Gypsy-182_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7079
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.136; Positions 2054368 2061446.
XX
CC   Positions [4988-5470] - Integrase core
CC   'CTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           387..2573
FT                 /product="Gypsy-182_AA-I_2p"
FT                 /translation="MANPNYSYDDLLNTNRTVNSQRTLVTPPGSDFADSLE
FT                 GAVGGNPARTPRIVWADQMMVDDSTNRLGRDRFSLDSRFPAPNNLQAELEH
FT                 AARLQLSAEGFQLPFRGVQSSTRVERRAENQSVTSQGFHMDLSGFSDPAGT
FT                 ASHTGGTNPFWDSEPGIDSNRNDSLNRLNASFLMPRDDAAPLLNSTAQPMV
FT                 STTIPQPVGTVHPESPGHPTAQRSAYFSQPSSANVDRRMFETTQPMIPESR
FT                 NEDFRMSYGESFAASQSASVPNPGNLPTGGPATESETLNNYVHVSEIQNYV
FT                 QTYVQQLLKDQHHRTAFSDPITSNLARQMAGVGLQDSDGPRASDRIRENRS
FT                 ASHDPLKLPAPLQLQCSDRSSFQPGNRTNPITAPTPQVFREVLRNSWPSFV
FT                 TPGYPRSPVRPTVRDTANEPQISTNYPVNDDSNARTSEEGTNFQIRRGRLP
FT                 HQTCNIMEKWPKFAGDANPTPVIDFLRQIELLSRSYQISKEELRTHAHLLF
FT                 KEDVYVWYSAYEPKFCSWDTLLYYLRMRYDNPNRDRFIREDLRNRKQRPNE
FT                 LFSAFLTDIENLSQRMNKKISDEEKFDIVVENMKMSYKRRLALEEISSLEH
FT                 LAQLCYRFDALEGNLYHPRGPTKTQLINEVYTEEEVVDSEDLNEDLEIAAL
FT                 QARKGLNGPQKDQSPVKFRETNDRAKPLCWNCRKSGHLWRECDQKKGIFCH
FT                 MCGHPETTAFRCPQQHDLRAASEAKPKNE"
FT   CDS           3158..5845
FT                 /product="Gypsy-182_AA-I_1p"
FT                 /translation="MPTVEIPTKRIENPMEIETEHQLSLQEKNQLFKAIQY
FT                 LPVTQEGRLGRTPLLKHSIELLPGATPRRIPSYRWSPAVETVIDAEMDRLL
FT                 NLDVIEECEGSADFVNPLLPIKKPTGKWRICLDSRRLNSLTKKDDFPIPNM
FT                 TVILQRIKRARYFSVIDLTESYYQVELDDEAKNKTAFRTNKGLYRFKVMPF
FT                 GLTNAPATMARLMVKVLGHDLEPFVYVYLDDIIIVSESFEEHLRLIECVGE
FT                 RLTRAGLTINILKSKFCQTSIKYLGYVLSEEGLSMDVAKIQPVLDYPIPRT
FT                 VKDIRRLLGLAGFYQKFIKNYSEITVPITDLLKKGHRKFEWTKEADNALQK
FT                 LKDALVSAPILANPDFSLPFIIETDSSDLAIGSVLVQIQNGERKCIAYYSK
FT                 KLSSTQRKYSATERECLAVLLSIENFRHFVEGNRFVVQTDAMSLTFLQTMS
FT                 IESKSPRIARWALKLSKYDVELQYKRGSENIPADALSRSLYVLDCQPTDPY
FT                 IEGLKQQVLQNPDQYSDFKIVNGKLFKFLTNSTLPEDPAFRCKEVVPLAER
FT                 KSTIDDIHKVAHLGFLKTLEKVRERYYWPRMASEIKRFCSSCPVCKESKVP
FT                 NMNVRPPCGKPKLCSRPWELISIDFLGPYPKSRKGNVWILVICDFFSKFVL
FT                 AQCMKAATAPGVCAVMENLVFNLFGAPSICITDNAKVFQSDLFKNLLKNYG
FT                 VTQWNLAVYHPSPNPAERVNRVIVTAIRCALNKQADHRNWDESIQKIVAAI
FT                 RTSVHESTGFTPYFINFGRNMISMGSEYEHLREFESETAYASVHRSEETRK
FT                 LYELVRQNLQEAYKRYSRPYNLRSNENHVFKPGDVVYKRDVHLSDKAKHFV
FT                 GKFGTKYTRARVQSVLGTNTYVLENEEGQRIPGTFHGSFLKKA"
XX
SQ   Sequence 7079 BP; 2071 A; 1498 C; 1537 G; 1973 T; 0 other;
     ttttggcgcc caacgtgggg cccgaaagcg gtgccttggc ttttttgtaa ataagataat        60
     tggtttgaat ttagttgagt tttgatgaat tttgtaaata tttgtgaatt gaattaacaa       120
     aatcggaatt taatcttaga gtttgcatta gtagaattta gattcggtag gcaagtaaga       180
     tagtaaatag gctaatcggt taagaaaatt tcagcatttg ttagaatttt gatcagtttg       240
     tatcttgaat tcggttttga acaaaaattt aaaagcgtag tatatctcct aattttattt       300
     ttcttttttt ctcagcaata tcatttctat ccggtatttt tcgtattttt tgtattgaat       360
     ttatattgaa ttgtgaatta ctaaatatgg cgaaccctaa ctatagttac gatgatctgt       420
     tgaacacgaa tcgtaccgtg aattctcaaa gaactctggt tacaccacca ggttcagatt       480
     ttgccgactc tctcgaagga gccgtgggtg gtaatcctgc tcgcacgcct cgtatcgtct       540
     gggcagatca aatgatggtg gatgattcca ctaataggct tgggagagat cgattttcgc       600
     tagacagtcg ctttccggct ccaaataact tgcaggctga gttggaacat gctgcgcgcc       660
     tccaactttc agcggaggga tttcagcttc ctttccgtgg ggtgcaatct agcacaagag       720
     tggaaagaag ggcggagaat caatccgtga catcgcaggg gttccatatg gacttgtcgg       780
     ggttttccga cccggcaggg acagcatcac atacgggtgg gacgaaccca ttctgggaca       840
     gtgaacccgg aatcgattcc aacaggaatg actcgctgaa tcggttgaat gcttctttcc       900
     tgatgcccag agatgacgcc gctccgctgc taaattctac ggctcagccg atggtatcca       960
     ctacaatacc gcagccggtg gggacggtgc atcctgaatc accaggacat cctaccgctc      1020
     agagatcagc atacttctct caaccgtcct ctgcaaatgt agatcgacga atgtttgaga      1080
     caacgcaacc aatgattcca gaatccagga atgaagattt ccgtatgtcg tatggtgaga      1140
     gcttcgcggc gagccagtct gcttcggtgc caaacccagg aaacctccca actggcggtc      1200
     ctgcgactga aagtgaaacg ttgaacaatt acgtacacgt ttccgaaatt caaaattatg      1260
     ttcaaactta cgttcaacag ttgttgaaag atcagcacca tcgtacagct ttctccgatc      1320
     cgattaccag caatttggct cggcaaatgg caggtgtggg tttacaagat tcagatggtc      1380
     ctcgggcgtc tgatagaatc agggaaaata ggtctgcttc tcatgatccg ttgaaactgc      1440
     cagcgccctt gcagctgcag tgctcggata ggtcaagttt tcaacctgga aatagaacca      1500
     atccaattac tgctcctact ccccaagtgt ttagggaggt tctacggaat tcttggccca      1560
     gttttgttac ccctggttat cccagatctc cagtaaggcc aactgttcga gatacagcca      1620
     acgaacccca aattagcacg aattatccgg tgaacgatga ttcgaacgct cgaacaagtg      1680
     aggaggggac taattttcag atcaggcgtg gtagattgcc acatcaaact tgtaatatta      1740
     tggagaaatg gcccaagttt gctggtgatg ccaatcctac tcccgttatt gacttcctgc      1800
     ggcagatcga acttctgagt cgttcctacc aaatctccaa ggaagagttg agaacccatg      1860
     cgcatctcct tttcaaagaa gacgtctatg tctggtattc tgcatacgag ccaaaattct      1920
     gctcgtggga taccttattg tattatttgc gtatgaggta tgacaatccc aatagggatc      1980
     gttttatacg ggaagatctt cgaaatcgaa aacagcgccc taacgaactg tttagcgcct      2040
     tcctcacgga cattgaaaat ctgtcccaaa ggatgaataa aaaaatttcg gatgaggaaa      2100
     aatttgatat cgtcgtcgag aacatgaaaa tgtcctacaa acgacgactg gccttggaag      2160
     aaatttcatc tctggagcac ttagcccaat tgtgctatcg attcgatgcc ctggaaggaa      2220
     atttatatca cccaagaggc ccaacaaaaa ctcaattaat taacgaagtc tacactgagg      2280
     aagaagtagt cgactcagag gacctaaacg aagatctcga gatcgcggct cttcaggcac      2340
     gaaagggact aaatggtcca caaaaagatc aatccccggt taaattcaga gaaaccaacg      2400
     atcgagctaa accactatgc tggaattgcc gcaaatcggg tcacctttgg agggaatgtg      2460
     atcaaaagaa aggcatattc tgtcacatgt gtggacaccc agaaacaacg gcctttcgtt      2520
     gtccacagca acatgacctc cgagcagctt cggaggccaa accaaaaaac gagtgaagga      2580
     ggagattctc gggaaccgag ctccttccaa ctttaaagaa caggttccca agtcacagtt      2640
     ttctcgattt aatcagacct ttttaataca gaccaatttc cggagatgcc ctcaccttat      2700
     cgtttccatt ttcgatattc aggtcgaagg acttgcagac accggagcta gtgtctcaat      2760
     aatcagttcg accaggctcc tcactcgcct tggcttgaag gttcagaaat gcgatttaag      2820
     aatatttacc gcagatcgaa ctccgtacac ctgtctgggg tatgtgaata tcccgtaccg      2880
     gtaccaagac gttacgaaag ttatcccgac tctagtagtc cctgaaatag ctaaaacgct      2940
     aatcttagga atcgatttct taactgcctt caacttccaa ttggtcgtta cgcctgttca      3000
     gaaggagtcg aatagtccag cttctaagag agatctatgt ctgaattata tcgagaacta      3060
     ttttggtgat gaagatggtc acatttgctt tcaagtgatc cctgaggtaa atcgtggacc      3120
     tgttgacgaa cctcaagaag aagatcaaag tcttgaaatg ccgacagtag aaattcccac      3180
     aaagcgaatc gaaaacccga tggagattga aaccgaacat caattgtctc ttcaagagaa      3240
     aaatcaactt tttaaagcca ttcaatacct tccagtaact caggaaggac gattgggtag      3300
     aaccccttta ttgaaacact ccatagaact tcttcctgga gcgacaccac gacggattcc      3360
     gtcttacaga tggtctccag cagttgagac agtgattgat gctgaaatgg acagactctt      3420
     aaatctagat gtcattgaag aatgtgaagg gtcggcagat ttcgtcaatc ccctattacc      3480
     gattaagaag cccaccggga aatggcgtat ttgcttagat tctcggcgat tgaactcctt      3540
     gaccaaaaag gacgacttcc caattccgaa tatgaccgta atcttgcagc gaatcaaacg      3600
     tgctcggtac ttttccgtga tagatttgac agaatcatac tatcaggtcg agcttgacga      3660
     tgaggctaaa aacaagactg cttttcggac caacaagggc ttgtaccgct tcaaggtaat      3720
     gcctttcggc cttacgaatg ctccggctac aatggcccgt ctgatggtga aggtcttggg      3780
     acatgaccta gagccgttcg tatacgtcta cttagatgat attataatag tatcggaatc      3840
     gtttgaggaa catctacgtt taattgagtg tgttggagaa cgtttaacac gagcaggctt      3900
     gaccatcaat atacttaaat ctaagttctg ccaaacgagc attaaatatc tgggatatgt      3960
     tttatccgaa gaggggttgt cgatggatgt agctaaaatc cagcccgtct tagactatcc      4020
     cataccccga actgttaaag atatcaggcg attgctcggt cttgccggtt tttatcaaaa      4080
     gtttattaaa aactattcag aaattactgt ccctattacc gatctcctca agaaagggca      4140
     tcggaaattc gagtggacca aggaggctga taacgctctg cagaagttga aagacgcctt      4200
     agtgtccgca ccgattttag cgaaccccga cttctcacta ccctttataa tagaaaccga      4260
     cagttcagat ttggccatcg gatctgtcct agtccaaatc cagaacgggg aacgaaagtg      4320
     catagcatat tattcaaaaa aattatcgag tacccaacgg aaatatagcg ccaccgagag      4380
     agaatgtttg gcggtacttt tgagtattga gaattttaga cacttcgttg aaggcaatcg      4440
     tttcgtggtt caaaccgatg cgatgagcct gacgtttctt caaacgatga gtattgaatc      4500
     caaaagtccg cgaatcgcgc gatgggctct aaaactttcg aaatacgacg tagagctcca      4560
     atacaaaagg ggttcagaga acattcccgc tgatgctctg agccgcagcc tgtacgtttt      4620
     ggattgtcaa ccgactgatc catatattga aggccttaaa caacaagttc tacagaatcc      4680
     tgaccagtat tctgatttca agatcgtcaa tggaaaactt ttcaagttct taacgaactc      4740
     gaccttgcca gaagacccag cgttccgctg taaagaagtt gtgcctttag cggagaggaa      4800
     atctacaatt gatgatatcc acaaggtagc tcacctcggg ttccttaaaa ccctggagaa      4860
     agtacgtgaa cgctactact ggcctcgtat ggcgagtgaa attaaacgtt tctgtagtag      4920
     ttgtcccgtt tgtaaagaat ctaaggttcc aaatatgaac gtccgtccac catgtggaaa      4980
     gcccaaactt tgtagtcgac cgtgggaact aatctccatc gacttcttag ggccctatcc      5040
     taaatcacgt aaagggaacg tctggatact tgtgatctgt gactttttct ctaaattcgt      5100
     gctggcccaa tgcatgaaag cagcaacggc tccaggagtc tgtgccgtta tggagaacct      5160
     tgtgttcaac ttatttgggg caccttcgat ctgtataaca gacaatgcca aagttttcca      5220
     aagtgacctg ttcaaaaatc tgctgaagaa ctatggggtg acacaatgga atcttgccgt      5280
     gtatcaccca agtccaaatc cagctgaaag ggtcaaccgt gtcattgtaa cggccatacg      5340
     atgtgctctg aataaacagg cagaccacag aaactgggat gagtccatac aaaagattgt      5400
     tgctgctatt cgtacaagcg tacatgaaag tacgggtttc acaccgtact ttataaattt      5460
     tggccgaaac atgatcagta tgggcagcga gtacgaacat ctcagagaat ttgagtcaga      5520
     aaccgcctac gcttcggtgc ataggagtga agaaactcga aaattgtatg aacttgttcg      5580
     tcagaatctc caagaagcgt acaaacgtta ttctcgacct tacaatttga gatcgaatga      5640
     aaaccatgtc ttcaaacccg gcgatgttgt gtataaacgt gatgtacatt tgtcggataa      5700
     agcaaaacac ttcgtcggga aattcggtac aaaatacact cgggctcgag ttcaatcggt      5760
     gcttgggacc aacacctatg ttctagagaa cgaagaaggt caaagaatcc ctggaacctt      5820
     tcatgggtct ttcctgaaga aggcctaaaa atagaacagg gttcagccat gaataatgct      5880
     caaaaaagca caagctatga ctgcactacg gtcgcgtagt gcatacacaa ctttcaaaac      5940
     aaacacacat ataggtggtg caacgatgca gtccgatccg agaggtccat aggtttcctc      6000
     gatcgtcgac acaaactaaa gctatgacgg tgcatccgcc tgatgcacaa aaacaataag      6060
     ccactcgtcc aaagaaaaca ctgaatgcag gtgctacggc aaatagtcca acgttgagaa      6120
     gtccatttgg ttgcctcacg ttgttgacca atttgtgctt ccgagatcga tcagtccagt      6180
     ctgttcaatt agactctgac cttgaccgtg aagtcgaagc ctctctcatg cgcatataat      6240
     gggattacct gtgttcttat tggaacagca gaaatcatcc caaaagcgta attcacaatt      6300
     cagtttttat cacttttttc actataattt ttggttctcg ttgatttttc actttccttc      6360
     cgtagattac aatagtttgt tcccgaattt ccatcgtaga gtccgtattt attattaaat      6420
     tacctgaaaa tttagttaaa tatttcattt ttcttacctc agcttgtttt gttttcatag      6480
     tttccatcct tctgagtgtt gacagaattt gacagcactt tctcacagta aagtttttga      6540
     cattccgtga aacgtcttgt aacgtctgaa tagggtagct atgttgactg ggaggattag      6600
     aatagggcgt gaatggtttc gatgtttcgg tatgcgtttc gtgtattagt tcggtaggta      6660
     attatgtttt ccaattcgtt aattggagta attcgggtcg gtatttgaaa tttcctgata      6720
     tgtcaggagt aaatcggttt aggttaagga gaaattttca gatatttctg aagtaattgg      6780
     aatatagaat aacgaatgcg tttgaggaat gattcagttt gtgagtaaat gtaatgagta      6840
     atttcgtcgg ggcagatcaa catagtaaat ccgttagaca atacagtgtt tcattagttt      6900
     ccgtaaattc cgtttagtta gtttgattag gtattccgat aatgaattta aaaacttatt      6960
     tttcaatttt ataaatgttt tgtgttaatt ttttcttaaa aaaaaaaaaa aaaaaattta      7020
     acataaaaat tttgaaattt ttaaaatttc aaaattttta tttcttagca tgggcgaaa       7079
//
ID   Gypsy-182_AA-LTR repbase;    DNA;    INV; 1661 BP.
XX
AC   supercont1.136;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-182_AA_;
KW   Gypsy-182_AA-I; Gypsy-182_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1661
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.136; Positions 2052707 2054367.
XX
SQ   Sequence 1661 BP; 471 A; 320 C; 358 G; 512 T; 0 other;
     tgtaacgata atttaaattc actctaaaat aagcacattg tgaattcgtg tttacacatt        60
     catacgtctt gctgtcagct agctcgaata caaaaatgct gtcagtttta tgcgagagtc       120
     tagacaacaa tcactctaag cgccgcctag gagttggcct aggtaataaa atgatatatt       180
     tcaaaattta aatccttagc gtcgagtctc ataaattgcg tcgtagagag agagtcagac       240
     aggtgtagct aggaaaaggc caactagtac aaaagactat tgtaactaaa cgctctttaa       300
     tcctccaata gtgggatatt gcgcagcaat ttttaggctc gatacaatta gcagcgcgtc       360
     ggtcctttca tttcagtgga gtgctttgtt gaaaccagac atactttccg agtattattc       420
     aaatttcaat cgttttgaac aaaagttaaa ttgtgcgggt gaataattaa actcgaagta       480
     agttttcgcg cgtgcataat tatttagttt atttaatttg tgatatttct ctttttaatt       540
     agcaactaaa ttgtcgagta tagtgcagtc gaaaaagatt tttttagtga atttattaca       600
     aaacaaattc aggtaagcct tacataacga atagtgagca taactgtgaa ttaattccac       660
     gttgattagg attagcgtgc ccaagcaacg tgggcggtta gtctggaggt gaaacctagc       720
     cccgtagcta tcccgaactc gacactgttg acgaggatta tttcgagcac gtgcagtggg       780
     gacatccacc gttcggcgat ctaacgtctt gctgtcggcg gctcaagcaa tcgtcccgct       840
     cgtctttcgt cgatcgtgca acatcgttcc gtgtcaccgc aagttaataa gtcgcacggc       900
     tggccacgct acaatccacg gccgatcact ccacgctaca aggggacgcc tataccccga       960
     atgagaagcc ggcgcgcggg gcacgtaagt aagacgaagc ataattagag cccgaagccg      1020
     acaacgtgtt gatgaatttg tttccaattt gaaattgaat cccgtttatt tgggccgaat      1080
     cacgtcgggg gacgtccgtc gttggatcgg tcacgacaat aattggaatt gctcacggag      1140
     cgaaaatacg attgcaatca aaagttagga aagcgtgacg tcacgatagg tcattaggtt      1200
     tatttgaatt tggcctttga attaaaagtt taagtaacta aatacaaact cgcttatctc      1260
     gatagattta gctgaatttg tttcgcgatc gagattgatt ttgaacttaa taaaacctac      1320
     ttcaagttta gtttaagtac tcttcttttt ttttccgcgt cacgcaatca atttgaattt      1380
     aattgttaat tgtgtttgtc taattagagc taagcgattc tcctttggtg gattattgag      1440
     ttatttttgt aaattttcct ttcttatatt ttaaattaga gtagctatat ttgtttgatt      1500
     tgccgtacga cgtttgggac taatttgcga catcagttct tagaacattg attgacctgc      1560
     cctgagaagg cagtctcatt ccgggctaat taacggagta acggtccttc ttcgaaggtg      1620
     gcgcttaagc cgattacttg gaaacggaac ggagcgttac a                          1661
//
ID   Gypsy-183_AA-I repbase;    DNA;    INV; 7013 BP.
XX
AC   supercont1.145;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-183_AA_;
KW   Gypsy-183_AA-LTR; Gypsy-183_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7013
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.145; Positions 1292314 1299326.
XX
CC   'ACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           551..2518
FT                 /product="Gypsy-183_AA-I_2p"
FT                 /translation="MMSVEHLMIYQSMNVMHLLDDEVEHELVIRREKFSSG
FT                 DSRDVKRRKLRRIMKLQRDKNEFTFIPLKEEQLEVEFHEIDEKLAKIREAL
FT                 ENKLVKKVDMPPLKTRLVHLLFRLNRLKDGMNFDTQGLEKVAVQLLNNYFS
FT                 FLSTDPDAVLETQERFQEDLSRLSVQNEKEGDEGEDEKTESSSTDDRVVTR
FT                 NKNRRNRSTSTPRRTRRTKMKSQDAIMKTVMSRIDRYLEQKLSSLNLSLNT
FT                 ELSGNQERRALDRVEFTESTSEGVQPQASTEKSGKRDVGKNGKNGQARKTP
FT                 ADSLAEKRREEKSKAKFSAECSEDDSESSAGSSDEEDSNSSDAARRSRRKG
FT                 ASRRPRPVADWKLKYDGKDDGKLLNKFIAEVEFMAEAENISKKALFNEAIH
FT                 LFAGEVRTWYMEGKKNKDFRNWKELVTELKLEYQSPDLDFHYEQQATQRRQ
FT                 RRSEKFTEYYNAMKEIFGYMSVPPAEERKFDIVFRNLSSDYKNALVVKNIR
FT                 SLKALKVWGRKLDSANWYLYRSRENESANKSAQVHEVSRKPFQKPMTFSGK
FT                 DWKPKSFVNNTNERKSQAPQYPKKLIDNQKPTNPRREPSPQQSSSSGTLER
FT                 QAAMYRIPDSDVCFNCKEKNHHYKSCLRKREKFCTKCGMHDVTAENCLFCQ
FT                 KNGRKSA"
FT   CDS           2641..5658
FT                 /product="Gypsy-183_AA-I_1p"
FT                 /translation="MGMPMVGLLDSGAQVSILGIGGEKLLQKLKMKKSQTR
FT                 TKLFAAGGEVLEVRGAVHLPITFNGRTRLVTTLIAPSLKRRFILGMNFWRL
FT                 FGIEPTIRDSPEVLVEEVEVEHEEEEIPLTVEQREQLEAIKKEFKAFEEGQ
FT                 TLGTTPLITHKIEFDEEFRTATPVRLNPYPWSPEVQKQVNLELDEWIEAGV
FT                 VERSTSDWALLVVPVLKKGETSEGETSLKVRMCLDARKLNERTRRDAYPLP
FT                 HQDRILGRLGSAKFLSTIDLSKAFWQIPLHPESRKYTAFRVFGRGLFQFTR
FT                 LPFGLVNSPATLSRLMEQVLGYGELEPKVFVYLDDIVIANDTFEDHINCLK
FT                 EVARRLKEANLSINLEKSKFCVPELPYLGFILSRNGVRPNPDKVEAIVNFE
FT                 RPTSIRSLRRFRGMINYYRRFIEGYSEITAPLTDLLKGKPKVVKWNEQAEA
FT                 AFISLKERLISAPILTNPNFTCPFTVQTDASDSAIAGVLTQEIEGEEHVIS
FT                 YFSRKLTTTQRAWKAAEKEGLAAMEAIEKFRPYIEGTRFTLITDSSALSFI
FT                 MNTKWKSSSKLSRWSMQLQQYDMVVRHRKGKDNVVPDALSRSMEALEIVEH
FT                 DDWYANLLRKIAECPEDYADFKVEDSKLYKFVSSPTDALDYRFEWKICVPE
FT                 NLRKSILDEEHDAAMHPGYEKNIQRLKCKYYWPGMAVDCKKHIRSCITCKE
FT                 CKPSTVATAPAMGKQKLTNKPFQILALDFIQSLPRSKQGKCHLLVMMDLFS
FT                 KWILLAPLRKIEAREVCRIVEDSWMRRFGTPEVIITDNATTFVGKEFQALL
FT                 NRRGVQHWPNARHHSQANPVERVNRTINACLRTYMREDQRNWESKIFEVEE
FT                 MINTTVHASTGFSPYRILYGHEKVEKGEHHRLEREDKEVAVEERDQFQAQI
FT                 NEKVFKIVEDNLKKSHDKNLKNYNLRHKKFAPTYHIGQRVFKRNFKLSSAV
FT                 DKFNAKYGPVYTPCVVVARRGTSAYEVADEEGKNLGVFSAADLRPDDSVAH
FT                 "
XX
SQ   Sequence 7013 BP; 2220 A; 1245 C; 1741 G; 1807 T; 0 other;
     attggctccc agccaaaatc gcgaaaggca aacggaggat cgagtagaat aaaaaattgt        60
     ttgaattttt taacacgagc gggaggagag tacacattca ctttgtcact gattgtgtag       120
     gatccgtgta ttatcctttt gccaacacag taccgtagac tgattttgag aagttgaaag       180
     gtagtggctt gttgaatcgg tttcggaagt gctaaaaaga ttgagaattg caagcacatt       240
     aacagttgtt aaaattgaat tagatcagag actgattatc aattgagtcg atagacggct       300
     aaaagtaaaa aaaaggtcct gaatgagcac taacacttat acactaatac ataaatacac       360
     caaaatcaac accatttatt gaattcgtat ttccttattt tgattttttt tttagtttta       420
     ttgttctcta gcttaagttg attgaatttt tatttgtata tattgtgcta cttttattga       480
     attcctttga actttgctga actgaattat ctactattaa attttccctt actgaattcc       540
     taattttggc atgatgagtg tcgaacacct gatgatctat caatcgatga acgttatgca       600
     cttactagac gatgaagtcg aacatgaact tgtcattcgg cgagagaagt tttctagtgg       660
     tgattcgagg gacgtcaaaa ggcgtaaatt gcgaagaata atgaagctgc aaagagataa       720
     aaacgaattt actttcattc ctttgaaaga agagcaacta gaggtagaat ttcacgaaat       780
     agatgagaag ttagcaaaga ttcgcgaggc gttagaaaac aaattagtca agaaagtcga       840
     catgccacca ttgaaaacgc ggttagttca tttactgttt cggttgaatc ggttgaaaga       900
     cggaatgaat tttgatacgc aagggctcga aaaagtggct gttcaattgc tgaacaatta       960
     cttctcgttt ctttcgactg acccagatgc agtgctagaa acgcaggaga gatttcagga      1020
     agatttgagt aggcttagtg ttcaaaatga gaaagagggt gacgagggtg aagatgaaaa      1080
     aaccgagtcg tcttcgacag atgacagggt cgtaacgcga aataagaata ggagaaatag      1140
     atcaacgagc acaccgagga gaactaggag gacaaaaatg aaaagccaag atgcgatcat      1200
     gaaaacggtt atgagtcgga ttgatagata tctcgagcag aagcttagta gtttgaacct      1260
     gagtttgaat acggaattga gcgggaatca ggagagaaga gcattagata gggtcgagtt      1320
     caccgaatcg acaagtgagg gggttcaacc gcaggctagt accgaaaagt cggggaaaag      1380
     agatgtcgga aagaatggaa agaatggaca ggctcgtaaa acgccagctg atagtcttgc      1440
     agaaaagagg agagaggaga agagcaaagc gaaatttagc gcggaatgca gtgaagatga      1500
     ttcggagagt tcggcaggtt cgagtgatga ggaggattcc aacagttcgg atgcagcacg      1560
     tcgtagtcgc agaaaaggag cgtcacgcag accacgaccg gtagcggatt ggaagctgaa      1620
     gtatgatggg aaggacgatg gaaaactgct gaataagttc attgccgagg ttgagtttat      1680
     ggccgaagct gagaacatta gcaagaaggc gttgttcaac gaagcaatcc acttgttcgc      1740
     aggagaagta cggacgtggt acatggaggg gaagaaaaat aaggacttca gaaactggaa      1800
     ggaattggtc accgagctga agctggaata ccaatcgcca gacctggatt tccactatga      1860
     acagcaggct actcaaagac gacagaggag atcagaaaag ttcacggagt actacaatgc      1920
     gatgaaggag atttttggat acatgtcagt accacccgca gaggaaagaa agtttgatat      1980
     cgtattcaga aatttaagtt ccgattataa aaatgccttg gtcgtgaaaa acattcgaag      2040
     tttgaaagcg ttaaaggtat ggggaaggaa gttggactcc gcaaattggt atctgtaccg      2100
     aagtagagaa aacgagtctg ctaacaaatc cgcgcaggta catgaagttt ctagaaaacc      2160
     gtttcagaaa cctatgacct tcagtgggaa agactggaaa cctaaatcct tcgtaaacaa      2220
     taccaatgaa cgtaagagtc aggcaccgca atatccaaag aaactaattg ataatcaaaa      2280
     acccacgaat cccagaagag aaccttcacc gcaacagagt agttctagcg gcacgttgga      2340
     aagacaagct gcaatgtatc gaatcccaga tagcgatgtg tgtttcaact gtaaggagaa      2400
     aaatcaccac tacaaatctt gtctgcgaaa gcgggaaaag ttttgtacga aatgtggcat      2460
     gcatgatgtt accgctgaaa attgtctatt ttgtcaaaaa aacggacgca aatcggcgta      2520
     ggaggtcgtc gagtgcgtaa ccaaaagcct ctaactgtct tcgtaccgtc caacccagaa      2580
     gtggaggagt taactgttcg tgtggaagga gacaaccgtc cgttcgtcaa atttgaggtg      2640
     atggggatgc ctatggtagg ccttctagac agtggcgccc aggtttcaat cctaggtatt      2700
     ggaggggaaa aattgcttca gaagctaaag atgaagaaat cccagactag gacgaaatta      2760
     tttgctgctg gaggcgaagt tttagaagtt cgaggagcag tgcatctccc aatcacattt      2820
     aatggcagga cgaggctagt aaccacacta attgccccct cgctgaaaag aagatttatt      2880
     ttggggatga atttttggcg cctttttggt atagaaccca ccattagaga ttcgccggaa      2940
     gtgctagtag aagaagttga ggttgagcac gaggaggagg agataccgct aaccgtggaa      3000
     caacgagagc agttagaagc cattaaaaag gagttcaaag cgtttgagga gggtcagaca      3060
     cttggcacca ctccgcttat tactcacaaa atcgagtttg acgaagaatt tcgaacagcc      3120
     acaccagtgc gtttgaaccc atatccgtgg tccccagagg tccagaagca ggttaacctg      3180
     gaactggatg aatggatcga agcgggagtc gtcgaacgat caacaagcga ttgggcttta      3240
     ttggttgtgc ctgtgttgaa gaaaggggag acgtctgaag gggaaaccag tctgaaagtt      3300
     cgcatgtgtt tagacgccag aaagctcaac gagaggacgc gtagagatgc ctacccgtta      3360
     cctcatcagg atcggatttt ggggcgattg gggtctgcaa agtttttatc tacgatagat      3420
     ctgtccaaag cgttttggca gattccttta caccctgagt cccgtaaata tacagcgttt      3480
     cgggtatttg gaagaggtct gttccaattc accaggcttc catttggctt ggttaatagt      3540
     ccagccacat tatcaaggct gatggaacaa gtgcttggct acggtgaatt ggaaccaaaa      3600
     gtttttgtgt atttggatga tattgtcatc gcaaacgaca catttgagga ccacatcaac      3660
     tgtttgaagg aagttgctcg aaggttaaag gaagcaaacc tgtccataaa tttagaaaaa      3720
     tcgaaattct gtgttcctga attgccgtac ttagggttta ttttgtcccg taatggcgta      3780
     agaccaaatc ctgacaaagt tgaggcgatt gtgaactttg aacgaccaac ctcaattcgg      3840
     tctttacgac ggtttcgggg catgataaac tactataggc ggtttataga aggatacagc      3900
     gaaataacgg ctccattaac tgaccttctg aaaggaaaac cgaaggtggt taaatggaat      3960
     gagcaagcgg aagcggcctt tatcagtttg aaagagcgat taatctccgc gcccattctg      4020
     acaaacccaa acttcacgtg tccgtttacg gtgcagactg atgctagcga tagcgccatc      4080
     gcaggagtcc tgacccaaga aattgaagga gaagaacatg tgatctccta tttctcgagg      4140
     aagctgacca ccacacagag ggcatggaaa gccgctgaaa aagagggttt ggctgccatg      4200
     gaggcgatag agaaatttag accgtatatc gaggggacta gatttacgtt aatcacggat      4260
     tcctcagctt tgtcgttcat aatgaacaca aaatggaagt cttcttctaa gcttagccgg      4320
     tggagcatgc aattacaaca atatgacatg gttgtgcgcc accggaaagg gaaggataac      4380
     gtggttcctg atgcgctttc caggtcgatg gaggcgttgg agattgttga gcatgacgac      4440
     tggtatgcaa acctacttcg taaaattgcc gaatgtccag aggattatgc agattttaag      4500
     gtagaggact ccaaactgta caaatttgtg tcctctccaa ccgatgcact cgattacaga      4560
     ttcgagtgga aaatttgtgt ccctgagaat ctgagaaaat cgattctgga tgaagaacac      4620
     gacgctgcta tgcatcccgg atatgaaaag aacattcaaa gattgaaatg taaatactac      4680
     tggcctggaa tggcagtaga ttgcaagaag catattagga gctgtattac ctgtaaggaa      4740
     tgcaagcctt caacagttgc aactgcacca gcaatgggta agcaaaagct gaccaataag      4800
     cctttccaaa tcttagcact agactttatt caaagtttgc cgagaagcaa gcagggtaaa      4860
     tgccatttat tggtcatgat ggacctgttt tcaaaatgga tcttgcttgc tccgcttagg      4920
     aaaattgaag cgagagaagt gtgtaggatt gtggaagata gttggatgag gaggtttgga      4980
     acaccggaag taattatcac ggataatgcg acgacttttg tagggaaaga gttccaagca      5040
     ttgcttaacc gtaggggagt ccagcactgg ccgaacgcaa ggcatcacag ccaggctaat      5100
     ccggtcgaaa gggtgaacag gacgataaat gcgtgcttga ggacatacat gcgtgaagat      5160
     cagcgtaact gggagtcgaa gatctttgaa gtggaggaga tgataaatac aactgttcat      5220
     gcatctacag gattttcgcc ttaccgaatt ctgtatggcc atgaaaaagt tgagaaaggg      5280
     gaacaccatc gactcgaaag ggaagataag gaagttgcag tagaagaaag ggatcaattt      5340
     caagcacaaa tcaatgaaaa agtgttcaaa atagtcgaag ataatctaaa gaaaagtcat      5400
     gataaaaact tgaaaaacta taatctacgt cataagaagt ttgcaccgac ttaccacata      5460
     ggacagcgag tgtttaaacg aaatttcaag ctatcgtcgg cggtggataa gtttaacgcc      5520
     aaatacgggc cagtttatac accgtgtgtt gttgtcgcca ggcgagggac cagtgcctac      5580
     gaggttgccg acgaggaagg caaaaaccta ggggttttct cagccgctga tttacgtcca      5640
     gatgactccg tggctcattg attgggttga acgttgccta aaagagacac ggagtgttaa      5700
     aatctgtatg ataaaagtag atcatcaata taacttacat tgaagcaggt gatacaatat      5760
     tgcattcgct gaacaccatt ggacgtcgta aagcaggtca tcatactccc tcagtcgaat      5820
     gagccatcta atatggtagt tatatcgtgg gaactcagga ctctttatag cttagtttgt      5880
     ccattggtga gtagttatcg tccgtctaat agagcagaga gagagtgttc tcttgctcag      5940
     ggttaagagg atgagtgcaa tgagtgtaca acctgcgaat taaagattaa tgacgtcatc      6000
     atttaggaag ctgcgcagcg agatcaggta gaaaagtgaa gaagattaaa attaactctt      6060
     ttgttggtga agccatgtac aaaaggggtg aaggaacttg ggaattttta gatagtagag      6120
     tagataatag ataataatag ctttaagata gagatagatt ttacgtagaa tttgaagaat      6180
     aattgtgagg aagaatgtat agaaagttat cgttgaactg tccaaatact tacccgtgat      6240
     atttttgaaa ttttaatttg ttaattccat agatgagatg ctcgttttca ggttcgttcc      6300
     gcaggaaaaa ccctagatag gatgctttca acgcgcgccg aaagcttgac caacagaaca      6360
     gggtctacta aagtagatct agcctgttgt gaccaggaag gccacctggt cgaatcaacc      6420
     tgaaaataaa cagtttcgtc cagcttaacg catagtagat acatatgaaa tacttatcta      6480
     atgcaatccg tagaatcacc attcgatacc atcttgtccg tttgttctgt agcacatttt      6540
     aatacgtact gtccattgtt catttttttt taatacacag tttgtaattg tccggtcaac      6600
     tacgtgtata atcgcgaacg cgtgtgagag gagactgatt ggtcatctcg atccctactg      6660
     tgtgtaggat gattcgttga tagacactga gagaaggaag tagtagaacg aattcacttt      6720
     aggtgttcat tgacaagccc actcacaaca aaattatctc acgtgctcaa ttatagcaag      6780
     tttcttagtg aaattcctgc ttttagtttg ccgaggattt taatgtgttt atgatgtcta      6840
     atgatggtaa ttgaatttta actgcttcgc gtagcgatta gtatatgttt gtggaatttt      6900
     tagcaactcc cttttaagct ttgaataaga tgttttcacc tctgtgtggg attaaataat      6960
     taccctccct gatctttagt tagggtaatt atttaacctc ggtgggggga tag             7013
//
ID   Gypsy-183_AA-LTR repbase;    DNA;    INV; 1053 BP.
XX
AC   supercont1.145;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-183_AA_;
KW   Gypsy-183_AA-I; Gypsy-183_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1053
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.145; Positions 1291261 1292313.
XX
SQ   Sequence 1053 BP; 264 A; 262 C; 265 G; 262 T; 0 other;
     tgtaaccgtt gttacaagaa ttcaaatcct tttttttaaa ttgcaccatg tggtcgagta        60
     ttcaaatatt caaatagcat aagcagtcaa aaccactggg cagttcgaca taacttaatg       120
     taacggtcgt aaaatcatgg cgtgaagaag ttacagcaaa atggggacac ggtttcacga       180
     atgggctgaa gggttcaaag gatgcttgct gggcggccat cgcccacttt taatcaggcg       240
     agcgtgtaga ccagaagtgc tcagtggagt agtaaaattt ataaaatagt gcgagtagtg       300
     aatcgtgtta agttggagag accgttcacc gcaattcagg taaaccatta gcctaatggc       360
     ataaaaggga gactgaatcc taattacctg ctcgccagga cctttttttg ttcttgcttt       420
     aaagcaatct ggttggcgcg tcctaagacc gccattgcac gctacggtcg aagtgtcctt       480
     tgtagtcact agacctaaca gtcaaggacc attgtttcct ctggccgagg gccatcaacg       540
     tcaaggagga cattactcgg gcaacggccc taattaccaa ggagtatttc ccttcacggt       600
     tcgacagagg gcggccttgc cgtcgtcgac cggtttcgtc cgaaggaagc gcctgtgcat       660
     ccgaaccaac tccacatcgc tgaagaccgt cattccagcc cattcacatc cgccattgcc       720
     ccaagctttg tccgccggta tcggtgccat cttgccgatc gtcgcagcgt cagtaggaga       780
     gaccgtcaac gccggagtga atccggtaaa tcgtcgcgag cgctcgctgg actgcagaac       840
     accaggtacg tgcccgaaaa tccagtgtga cccaccagaa cagtttggcc aaatacatcg       900
     ttaaaatttg aaccgctcgt gtgtgtgatt atttgaatag ttgagtgccc tttgaatccg       960
     cgaagcccct ccggttgccc ggtagcgcgc cgaccctgtg actgtgtccg agtctcgcgc      1020
     tgctgagttg ttgtcgggta gaatattgtt tca                                   1053
//
ID   Gypsy-184_AA-I repbase;    DNA;    INV; 4826 BP.
XX
AC   supercont1.139;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-184_AA_;
KW   Gypsy-184_AA-LTR; Gypsy-184_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4826
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.139; Positions  363676  358851.
XX
CC   'TGATA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           557..4720
FT                 /product="Gypsy-184_AA-I_1p"
FT                 /translation="MALIGTIDPYVPGTSFSNYVELIEYFFSSNNIAEDRK
FT                 KDIFMSCAGLAVFEELKLLYPATDLKTLSYAEITKKLKERLDKIDSEIMLR
FT                 YKFRCRRQSPSESGENYILAVKHLAESCDFGAFRDSAIRDQLVFGVYNREL
FT                 QKRLLNEEDLNLRSAERIIKGFEMANNNTLYFAETGAGIGVNSVKHRLGGR
FT                 QSRIDRMDRSRSRERNFSRNRNLRTNFRKFEGRSRSGQRNSSRGRYANFVC
FT                 HFCRKRGHIQKNCYQYRDNQGESVNSVKAETNPKEVHDYFKRLRVDYDSES
FT                 EEEGDYPCLMISSIRKVSKPCLLEVKIEGRVCLMEVDSGSAVSVISKTEFL
FT                 EKFSGINVRKSHKKLIVINGSNLEIYGKALISVCLNGNSSNLELVVLDGDH
FT                 KFTALIGRDWLDVFYNGWREKFLQMDKSTSFGAVHSVQDNIDNALSVMKSR
FT                 YSEIFNRDFSSPIVGFEAELVLKEDRPIFRKPYDVPYRLKDKVLDHLGLLE
FT                 KDNIITPIKTSLWASPIVVIIKKDGDIRLVIDCKVSINKVLIANTYPLPTA
FT                 QDLFASLAGCKIFCSLDLTTAYTQLQLSENSRKIVVINTIKGLFTYNRLPQ
FT                 GASSSAAIFQQVMETILQDIEYVYVYLDDVLIAGKDFEDCYKRLTLVLDRL
FT                 VKANIKVNLKKCKFFVTQLPYLGHIITDNGLLPNPEKVSTIIAADKPKNTT
FT                 ELKAFLGLVNYYGKFLQNLSSTLSPLYMLLKKEVKFLWDFKCDEAFEGCKE
FT                 KLLKANILTFYDPKKPIVVSTDASSYGLGGVISHVIEGVEKPIWFTSFSLN
FT                 HAQRNYPILHLEALAVVSTVKKFHKFLFGQKFTIFTDHKPLLGIFGKEGRN
FT                 SISVTRIQRYVMELAIYDYNIEYRPANKMANADFCSRFPLKIEVPKSLEKQ
FT                 YIKHLNFSSELPLDYVTIAKESKKDFFLQQIVAFMKNGWPERIDQCFKNIY
FT                 SQHQNLEEIEGCLLFQDRVIIPVALQRKCLQLLHSNHLGIVKMKQQARRSL
FT                 YWFGINSDIESFVKNCEVCIKTSIVPTHKGTSEWISTSRPFSRIHADFFYF
FT                 ERRTFLLIVDSFSKWLEVVWMKYGTDAEKVVKEFIAFFSRFGLPDVIVTDN
FT                 GPPFNSTYFIGFLERQGIQVFKSPPYHPQSNGQAERLVRVTKEVLKKFLLD
FT                 PAMKPMDLQDKINYFLFNYRNTCLSEGGKYPSESVLSFKPKTILDLVNPKN
FT                 NYKQHLTEPLETKCEIIESNEQDPYANLKLGDKVYYKNHNTKDIEKWLNAT
FT                 FIKKISQNILQISIGSTLISAHKGQVKIQSKSGRRRNITLQLPAVEDASSN
FT                 TGRAKKRMFCELDESDEEFRGFSPEPPLPTAREPHPRLLQGSQKSVRVPTP
FT                 QCHPVLRRSTREKKKKIDKDFVYRK"
XX
SQ   Sequence 4826 BP; 1635 A; 761 C; 1029 G; 1401 T; 0 other;
     gttggcgacg agggaaagca aaagttgaga tattgattcg tgtgcattag ttggcagtgt        60
     tgtgtcgtaa ggctggagta aagttcagtg gtagttggtg aagttgctgt tgtttggtgg       120
     ctgttggaac ggtgaagggg aaaattgcta tacggagaac atattgtttg accaggtgca       180
     aatcgaactc ctgtaagctg tggtgattcg cacaaggagg atacttgtct ggcgaataca       240
     gtggtagaaa gcgccgagtg taataatttt gaagcggcca ttacaatttc attaatttgt       300
     ggtttctagc cggtcggaaa agcgacgcca gattttactt gctgaaaaaa cggttcgtga       360
     gtggaataag aacggcggag ttgaagtgtt gggaatagcg ggagccttga agtaaaacta       420
     atctggaggt ggaagaaaca tctgaggaca acatcgaaga ttgaggacgt tagcagtatc       480
     aaacaggtac gtggtttact ttctattatt aattcaggtg agcacagttt tatcaattga       540
     ttcggtgcag tcaaaaatgg cgttgatcgg cacaatcgat ccgtatgtgc ccggcactag       600
     tttttcaaat tatgtggaat taatagaata ttttttttcg tcaaacaaca ttgctgaaga       660
     tcgtaaaaaa gatatattta tgagttgtgc aggattggcg gtatttgagg agttgaagct       720
     tctgtaccca gctacagacc ttaaaacatt gtcttacgcc gaaatcacta aaaaattaaa       780
     ggaaaggtta gacaaaattg actcggagat aatgttgagg tacaagtttc gttgtagaag       840
     acagagtcca agcgagagtg gagagaatta tatattagca gtaaagcatt tagcagaatc       900
     ctgtgatttt ggcgcatttc gagattccgc cattcgagac caattagtgt tcggagtata       960
     caatagggaa ttacaaaagc gtttactaaa cgaagaagat ttaaatttaa ggtcggctga      1020
     aaggattatt aaaggttttg aaatggcgaa caataatact ctctattttg ctgagacagg      1080
     agcaggaata ggggttaatt ctgtcaagca ccgcctcgga ggtagacagt ccaggataga      1140
     cagaatggat cgtagtcgat ctagagaaag aaatttcagc agaaatagaa atttacgaac      1200
     taattttaga aagtttgaag gacggtcaag gtcgggccaa cgaaattcga gccgaggtag      1260
     atacgccaat tttgtctgtc atttttgtag gaagcggggt catatccaaa agaattgtta      1320
     ccaatacaga gataatcagg gcgaatcggt gaactcagtg aaagcagaaa ccaatcctaa      1380
     ggaagtccac gactatttca aaaggcttcg tgtagattat gattcggaaa gtgaggaaga      1440
     aggtgactat ccatgtttaa tgatttcttc tattagaaaa gtaagcaaac cttgtctact      1500
     cgaagtcaaa atagaaggaa gagtatgttt aatggaagta gatagtggtt cggcagtgtc      1560
     tgtcattagt aaaacagaat ttttggaaaa atttagtggc attaatgtga gaaagagtca      1620
     taaaaaattg attgtgatca acggatcaaa tttggaaatt tatggaaaag ctttaatatc      1680
     ggtatgttta aacggtaatt cttctaattt ggaattagtt gttctggatg gagaccataa      1740
     gtttacggct ctcattggaa gagattggtt ggatgtattt tacaatggtt ggcgagaaaa      1800
     atttttgcaa atggacaaat ctaccagttt tggagcagtg cacagcgtac aggacaatat      1860
     agataatgca ttaagcgtta tgaaaagccg ctatagtgaa attttcaaca gagatttttc      1920
     atctcctatt gttggctttg aagcggaatt ggtattaaaa gaagaccgcc caatttttcg      1980
     aaaaccctac gatgttcctt atcgactgaa ggataaagta ttggatcatt taggtttact      2040
     agagaaagac aatattataa cacctattaa aactagcttg tgggcatctc caatagtagt      2100
     cattattaaa aaagatggtg atattagatt agtaatagat tgcaaggtat ctataaataa      2160
     agttttgatt gcaaatacgt atccattgcc aactgcccaa gatttattcg catcactagc      2220
     tggttgcaag attttctgtt ctttggattt aaccacggcg tatactcagt tgcagttatc      2280
     agaaaactca agaaaaattg ttgtcattaa cacaattaag ggtctcttca cttacaatag      2340
     gctcccacaa ggcgcatctt ctagcgcagc catctttcaa caggtgatgg agactatttt      2400
     gcaagatatc gaatacgtgt atgtttatct tgacgatgtc ctcatagcag gaaaggattt      2460
     tgaagactgc tacaaacgtt tgacattggt attagacaga ttagttaaag caaatatcaa      2520
     agttaattta aaaaaatgta agttttttgt aactcaattg ccatatctag gacacattat      2580
     aaccgacaat ggacttttac ctaatccaga aaaagtatcg acaatcatag cagctgacaa      2640
     accgaagaac acaacagaat tgaaagcatt tttgggactc gtaaattatt acggaaaatt      2700
     tttacaaaat ttatcctcaa cgttaagtcc actgtatatg ttattgaaaa aagaggtaaa      2760
     atttctttgg gattttaaat gcgatgaagc atttgagggt tgtaaagaaa aactgctgaa      2820
     agcaaatatt ttgacgtttt atgatcccaa aaagccaatt gtggttagta cagatgcgtc      2880
     ctcatatgga ctcggaggag tcatttcaca tgtcatcgaa ggggtagaaa aaccaatttg      2940
     gtttacgtca ttctcactca atcatgctca aaggaactac cccatacttc atttggaagc      3000
     tttggcagtg gtatcaacag ttaaaaaatt ccacaaattt ttgtttggcc aaaaattcac      3060
     tatttttacg gatcacaaac cccttttggg aatttttgga aaagaaggac gaaattcaat      3120
     ttcagtgact agaattcagc gttacgttat ggaattggct atttatgatt acaatataga      3180
     atacagacca gccaacaaaa tggctaacgc tgatttctgc tcgcgttttc ctttgaaaat      3240
     agaagtcccc aaaagcttgg aaaagcaata tataaaacat ctaaattttt ctagcgagct      3300
     gccattggat tatgtaacga ttgctaaaga atcaaaaaag gatttctttt tgcaacaaat      3360
     tgttgccttt atgaaaaatg gatggccaga aagaattgat caatgtttca aaaatatcta      3420
     ctcacaacat caaaatttag aggaaatcga aggatgcctc cttttccaag acagagtgat      3480
     tattccagtt gcactacaaa gaaaatgttt acaattactt cattcaaacc acttaggaat      3540
     agtgaaaatg aagcaacaag ctagaagaag cctctattgg tttgggataa atagtgacat      3600
     cgaatcattt gtaaaaaatt gtgaagtgtg tataaaaaca tctattgtcc ctacacataa      3660
     gggtacctca gaatggattt ctacttcgag acctttcagc agaattcacg ccgatttctt      3720
     ttattttgaa aggcgcactt ttcttttaat agttgatagc ttttcgaaat ggttagaggt      3780
     tgtttggatg aagtatggta cggatgcaga aaaagtagta aaagaattta tagcattttt      3840
     ttcacgtttc ggacttcctg atgtaatagt aacagataac gggccaccct tcaattcaac      3900
     ctattttatt ggttttttag agaggcaagg catacaagtt tttaaaagtc cgccatacca      3960
     tcctcaaagt aatggacagg cagaacgttt agttagagtg actaaggagg tgttgaaaaa      4020
     atttttgttg gaccctgcta tgaaaccgat ggatcttcaa gacaagataa attattttct      4080
     gttcaactac cgaaatactt gtttatctga agggggaaag tatccttcag aaagtgtact      4140
     atcttttaaa ccaaaaacaa ttcttgattt agtgaatcct aagaacaatt acaaacaaca      4200
     cctgaccgaa ccattagaaa cgaaatgtga aattattgaa agtaatgagc aagaccctta      4260
     cgctaatttg aaattgggag ataaggtcta ctataaaaat cacaacacta aagatataga      4320
     aaaatggctt aatgcaacat ttattaaaaa aatctctcaa aatattttac agatctccat      4380
     cgggtcaacg ctcatctcgg cccacaaggg gcaggtgaaa attcagagta agtctggacg      4440
     aaggcgtaat ataacgctcc agctgcctgc tgtggaagac gcttcatcaa ataccggacg      4500
     agcaaagaaa aggatgtttt gtgagctaga tgaaagcgat gaagaattca gggggttcag      4560
     tcccgaacca cccctgccta cagctcgtga accacacccc aggttactcc aaggcagtca      4620
     gaagtcggtt cgtgtaccta ctccacaatg tcatccggtg ctcagaagat cgactagaga      4680
     gaaaaagaaa aaaattgata aggattttgt gtatagaaag tgaagcatgt attaatggaa      4740
     ttttaaaaca atcactattg aattgaatct agtgaataca tttattactt gaattattaa      4800
     tatttctaat taaaagggga aggtat                                           4826
//
ID   Gypsy-184_AA-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   supercont1.139;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-184_AA_;
KW   Gypsy-184_AA-I; Gypsy-184_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.139; Positions  358850  358617.
XX
SQ   Sequence 234 BP; 74 A; 33 C; 55 G; 72 T; 0 other;
     tgtaacgtca gggtttgttg aaggaagtga atacagccga cgattgcgcc ggtctatagt        60
     ttatgcatca tttgtaatgc tggtacataa gtaaacaaag agggcattga tctatgtaac       120
     ttgttattgt tttgatagct ataaataggc tcagcaataa agacagtgga agtcagttga       180
     atcccagaag ctaataactt tagtgttgtt tagtggtgaa atccgaacat atca             234
//
ID   Gypsy-185_AA-I repbase;    DNA;    INV; 4390 BP.
XX
AC   supercont1.145;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-185_AA_;
KW   Gypsy-185_AA-LTR; Gypsy-185_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.145; Positions 1013967 1018356.
XX
CC   'CTATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           975..4286
FT                 /product="Gypsy-185_AA-I_1p"
FT                 /translation="MMISAVNKINEPCYVEVLADRKWLTMEIDCGSSESVI
FT                 SESLFLRNFKSHTLKPCNKKLVVIDGKRLAILGKVFVPVQVGDINKDLSMV
FT                 VLRCDNEFVPLMGRTWLDVFYQGWRNTFARPSTAAGTINALTEDETINDVK
FT                 RKFPNVFDKDFSNPIVGFTGDLVLKEDEPIFKKAYDVPLRLKQKVIDYLDT
FT                 LEKDGIITPVEASEWASPVIVVMKKDQQIRLVIDCKVSINKVIVPNTYPLP
FT                 LIQDIFAAISGSKVFCSLDLAGAYTQLLLSENSKKLMVINTLKGLYRYNRL
FT                 PQGASSSAAIFQKVMDQVLRGIEHVCCYLDDVLIAGKDFEDCKNKLYLVLE
FT                 RLAKANIKVNFKKCKFFVDELPYLGHVLTEKGLLPCPEKVQTIREAKAPRN
FT                 VSELKAFLGLLTYYSKFIPNLSSRIHCLYSLLKKNVHYTWTKECNKAFEDC
FT                 KQILLKPKLLEYFDPDKPIVVVTDACNYGVGGVIAHIVDGVEKPISFTSFS
FT                 LNNAQKNYPILHLEALAIVSTVKKYHRYLYGMKFTIFTDHKPLIGIFGKEG
FT                 KNAMSVTRLQRYIMEMSIYDYDIVYRPASKMGNADFCSRFPLAQEIPKDLA
FT                 VEFVKNLNLSDEFPMDYLEIARATTNDDFIQKIIYFLHNGWPDRLEKCFKD
FT                 VYSLHQDLEEIDGCVLFQDRVIVPVSMKEKVLKLLHSNHSGISKIKQLARR
FT                 TVYWFGMNGDVEKYVKSCSICNKMNAVTKPAPYSRWIPTKKPFSRLHADFF
FT                 YFERKMFLVVVDSFTKWIELEYMRNGTDHKKVIKVFLSIFARFGLPDVLVT
FT                 DGGPPFNSSNFVTFFEKQGIRVMKSPPYHPESNGQAERTVRLVKDVLKKFL
FT                 LDREIRGLDTDEQISYFLFNYRNICLEKDGEFPYERLLSYKPKTLLDLINP
FT                 KSSFKKNLTEFYDDNQHACETKKDKKSDPFAKLRVGDLIYYKNSNKTDIRK
FT                 WIPAKFLKQISDHILQISLGGRIVWAHKRQLKVQSESHLRMDRKVVFRGES
FT                 LVDTTDQPQADCLLQQDNVEEEEEDIAVDNNRKRRREEDDMSDSSSSFYGY
FT                 PADSFIFQENDFNQFDFENEVSEDQQNPIRKSKRRTKKKRKKDFVYY"
XX
SQ   Sequence 4390 BP; 1421 A; 692 C; 924 G; 1353 T; 0 other;
     gtggcgacaa ggataaagtt tatatagtcg atagcgtcgc gagtgaaata gtgaaatttt        60
     cctgaatttt tgcggcgtaa gtttaagaaa cttatttcag gaagtggtga tagcatagct       120
     gatttttatt gaattttgtt gacaaagcat tttgtcacac gcttcctaat cttttttgaa       180
     tttttaagag catttgtggc gtgctttaac gttcactaat tagttttgtt ggctggaaaa       240
     tcagcatcat ttcaaagggt tatttagtga ttttagtgaa atcgagcgtg aaaatcacga       300
     cgaaaatcaa ttttggcgaa agaagaaacc attttgtata gtgcatttta tacattttat       360
     tgaaaaggcg tttgattctc attgttctat tgtgatttct tattcttttg tttgatgcgc       420
     cgtattcatt tcattttcac cattttgagc atcatttatt ttccagtgta agcgtcataa       480
     aaggaaggcg gcagtagcct cttctaactg cttctaaagc agaaagaatt atcgttaatc       540
     aggaaatatc cagtgacagg acgcgttatt tgaaagagga ttatgataaa agaagtaata       600
     accgcagtaa tgtgatagct agacttggtg ctagagtgaa tcgttctcgt gttagatttg       660
     aacgcagaag tagaagcagg agtagaagtt acagccgaga tagatcgttt tcaagagaag       720
     gccgaagaaa tcgtagattt ggcgataggc gcgaaaacaa tagcagtata ccaacttttt       780
     tgtgttcatt ttgtaaaaaa cgtggacaca ctagaaagtt ttgttataaa ttgaacaaga       840
     agagtccaag ccaggaaaga agccatgtta accttattca atcacctaaa tcctcaacat       900
     cctctacttc agcattgttt aaaagattga aaactgattt gcaagataca gaatcggagg       960
     atgattctcc ttgcatgatg atttcggcag ttaataagat taacgaaccg tgttacgttg      1020
     aagttctagc ggataggaaa tggctgacaa tggagattga ttgcggctct tcagagagcg      1080
     ttatttccga aagtctgttt ttgaggaact ttaaatctca cactttaaaa ccttgcaaca      1140
     aaaagttagt cgtcatagac ggaaaacgtt tggctatttt gggaaaagtt tttgttccag      1200
     tgcaggtagg agacatcaac aaagaccttt ccatggtagt actacggtgt gacaacgagt      1260
     ttgtgccatt gatgggccgt acatggttag acgtttttta tcaaggatgg agaaatactt      1320
     tcgctagacc atcgacagct gcagggacga taaatgcttt gacggaagac gagacgatta      1380
     atgacgttaa acgtaagttt cccaacgttt ttgacaagga tttctcaaat ccaattgttg      1440
     gttttaccgg ggacttagtt ttgaaagaag atgaacccat tttcaaaaaa gcatacgatg      1500
     ttcctttgcg tttaaaacaa aaggttattg attatctgga cactttagag aaagacggta      1560
     tcataactcc cgttgaagca agtgaatggg catcaccagt cattgtagtt atgaaaaaag      1620
     atcagcaaat ccggttagtg atcgattgta aagtgtcaat taataaggtt attgtgccaa      1680
     atacataccc tcttcctcta atccaagaca tttttgctgc tatttctggt tcaaaagttt      1740
     tttgttcgtt agacctcgct ggtgcttata cacagctttt actttctgaa aattcgaaga      1800
     agctaatggt cataaacaca ttaaaaggtc tttatcgtta taacaggtta cctcagggtg      1860
     cctcatcgag tgcagcgatt tttcagaaag ttatggacca ggtgttgaga ggaattgagc      1920
     atgtttgttg ttatttagac gacgtgttga tagcgggtaa agattttgag gattgtaaga      1980
     ataaacttta tttggtttta gaaagactag ctaaggccaa tattaaagta aatttcaaga      2040
     aatgcaaatt ttttgttgac gaattgccgt atttaggaca tgttttgacc gagaaagggt      2100
     tactaccttg tcctgaaaaa gttcaaacta ttcgggaagc gaaagctcct cgaaatgttt      2160
     ccgagcttaa ggcttttttg gggttactaa cttattactc caaatttatt cccaatcttt      2220
     catcccgcat tcattgcctt tacagtcttt tgaaaaagaa tgttcattac acctggacaa      2280
     aagagtgtaa taaggcattt gaagattgta aacagatttt attgaaacct aaacttttgg      2340
     aatactttga cccagataaa ccaattgtag tggttactga tgcatgtaac tatggtgttg      2400
     gcggagtcat cgctcatata gtggacggag tagaaaagcc aataagcttt acttcctttt      2460
     ctcttaacaa tgcgcagaaa aattacccga tattgcattt ggaggctttg gcgattgtca      2520
     gtacggtaaa aaagtaccat agatatttgt atggcatgaa attcactatt tttacggatc      2580
     acaaaccgct tattggtatt ttcggcaagg aagggaaaaa tgcgatgtct gtcacaagat      2640
     tgcaacgtta tatcatggaa atgtctattt atgattacga tatagtatac agacctgcat      2700
     ctaaaatggg aaatgcagac ttctgctctc gttttccgct tgctcaagaa attccaaagg      2760
     atttagcagt ggagtttgtg aagaatttaa acctttcgga tgaatttcct atggactatc      2820
     tagagatagc tagagctacc acaaatgatg atttcattca aaaaattatt tattttcttc      2880
     acaatggttg gccagatcga ctggaaaaat gttttaagga tgtatattct ctacatcaag      2940
     atcttgagga aatcgacggt tgtgttttgt ttcaagaccg agtaattgtc cctgtaagta      3000
     tgaaagaaaa agtacttaaa ttgttacact ccaatcactc gggaatcagc aaaataaaac      3060
     aacttgcgag gcgaaccgta tactggtttg gcatgaatgg tgatgtggaa aaatatgtga      3120
     aatcatgcag catttgtaat aagatgaatg ctgtaacaaa accagcacct tattctcgtt      3180
     ggatacctac aaaaaagcca tttagtcgac tgcatgcgga tttcttttat tttgagagga      3240
     agatgttttt ggtcgtcgta gacagcttta ccaaatggat tgagttggaa tatatgagaa      3300
     atggtacaga tcataaaaag gtaatcaagg ttttcctgag catattcgct cgttttgggt      3360
     tgccggatgt tttagtgacc gatggaggac cacctttcaa ttcaagcaat tttgttacct      3420
     tttttgagaa acaaggcatc cgggtcatga agagccctcc atatcaccct gaaagcaacg      3480
     gccaagcgga gagaacagtt cggttggtca aggacgtatt aaagaagttc cttttggatc      3540
     gagaaattag gggtttggat acggatgagc aaatatcata ttttcttttc aattacagga      3600
     acatttgtct tgaaaaggat ggcgaattcc cctatgagcg attactctca tataaaccta      3660
     aaaccctact ggatttgatt aatcctaaat ctagttttaa aaagaaccta acagaatttt      3720
     atgatgataa ccaacatgca tgcgagacta aaaaggataa gaaatctgat ccttttgcta      3780
     agcttagagt tggagacctg atttattaca agaactctaa caagactgat attagaaaat      3840
     ggattcccgc aaaattccta aaacagatct ctgatcacat tttacagatt tccctcggtg      3900
     gtagaattgt atgggcgcac aagcgtcaat tgaaagtgca gtctgaatca cacttgagaa      3960
     tggatcgaaa ggtagtgttt cgaggagaga gtttggttga tacaacggat caaccacaag      4020
     cagattgttt actacaacaa gacaacgttg aagaagagga agaagatata gcagtagaca      4080
     ataataggaa aagaagaaga gaagaagatg atatgtctga ttcaagttca tcgttttacg      4140
     gttatcctgc cgattcgttt atatttcaag aaaatgattt taatcaattc gattttgaaa      4200
     atgaagtttc agaggatcaa cagaatccta tcagaaaaag caaaagaaga actaagaaaa      4260
     agcgaaagaa agactttgtg tattattgaa tgaattatca gagatgtgga atttaatgaa      4320
     ataattgtaa atagtcgaaa ttatatttta tataaaacaa tcctggaact ttctcaaagg      4380
     gatgaggagt                                                             4390
//
ID   Gypsy-185_AA-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   supercont1.145;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-185_AA_;
KW   Gypsy-185_AA-I; Gypsy-185_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-272
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.145; Positions 1013695 1013966.
XX
SQ   Sequence 272 BP; 116 A; 24 C; 57 G; 75 T; 0 other;
     tgttgcatac aagttcaata caatgttcgg taaaatagga agataccgat ttcgaatata        60
     ggaagtaaaa taaggaattg tgcgagagag atgaaagaga gtaaaagaga taggtttaac       120
     gaaaagagaa tatagaagtg taatgatgaa caggagaaat aaatctagtc agaaagtgtt       180
     tgagatcgaa ctgaacaagt cgtgttttat tctagagaag aaaagttaat atctttaaat       240
     tatattataa aaacccttta caatattttg ca                                     272
//
ID   Gypsy-186_AA-I repbase;    DNA;    INV; 4729 BP.
XX
AC   supercont1.123;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-186_AA_;
KW   Gypsy-186_AA-LTR; Gypsy-186_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4729
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.123; Positions 2369108 2373836.
XX
CC   Positions [3585-4055] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..2023
FT                 /product="Gypsy-186_AA-I_1p"
FT                 /translation="MSYVAPNIDPYRKGQSFASWFKRLGYHFRVNKVADEN
FT                 KKDQMFLLGGEYLFEVAQNLYLSEQLLDAAPLEELVEKLKQKLDKTDSTLI
FT                 QRYKFGSRVQQAGETASDFLFSLKLQAEYCNFKDDKNSRILDRVLIGLSDD
FT                 TLRQKLLTEDGENFNLAQAEKTITTWEMAASNAKALTKDDVSAQIASIGSL
FT                 TGGRGAVLQRIADLAQGRSIAPVKSRLGYRPQYKSPARSVDRSTRPYNRFN
FT                 DRAHRSPSRYRQPRHVRFEDSHRRYEDAPLYPAEMETKQQIVIDQRVCSYC
FT                 GVPGHVRRKCFQLKQYKKDPINNINLGKPGSSTENTLSNMMNQMTWDDSTD
FT                 DSDQGDLECMHISSINHLSTPCLLELTVAGKILQMEVDSGASVSVIGKRLF
FT                 DVRLNVPLKESSKNLIVVNGSSLKVAGEAIVSVEFQDVRKNLKLLVLDCDH
FT                 DFIPLLGRTWLDVFFPNWRNFFDKLLPVNNVTDYKVDDLMNDIKDKFSNVF
FT                 IKDFSSPIREYEAELVLKTDTPIFRKAYDVPYRLRDKVLNYLDKLEKENVI
FT                 TAIQTSEWASPVIVVMKKKW"
FT   CDS           2205..4643
FT                 /product="Gypsy-186_AA-I_2p"
FT                 /translation="MVINTIKGLFTYNRLPQGASSSASIFQQVMDQILRGI
FT                 ENVYVYLDDVLIAGKNLEDCRRKLHIVLDRLSEANIKVNWDECKFFVTSLE
FT                 YLGHIISEKGLSPCASKIATIKNAQIPTNVTELKSFLGLINYYNRFIPGLS
FT                 SKLHSLYNLLKNDVKFIWNDECDKAFTNSKNLLLETNFLEFYDSRKPIIVV
FT                 SDASGYGLGGVIAHSIDGVEKPICFTSFSLNSAQKKYPILHLEALALVCTI
FT                 KKFHKYLYGQKFTVFTDHKPLVGIFGKEGKNAIFVTRLQRYILELSIYEFD
FT                 IQYRPSSKMGNADFCSRFPLEQSVPKDLDLDCIKHINFSSDCPIDFTNIAK
FT                 NTKADSFLQRIISFMRHGWPKKIEKNFKDVFANQHDLEIFEGCLLYQDRVI
FT                 VPQNLQIEILKLLHANHVGMVKMKHLARRSVYWYGINADIENYVSECETCA
FT                 SLAVHPKQKIDSKWTPSTRPFGRVPIDFFYFKHHVFLLIVDSFSKWVEVEW
FT                 MKNGTSCPKVIKKLLAYFARFGFPDILVSDNGPPFNSHDFKNFLERQGIRV
FT                 LNSPPYNPASNGQAERLVRTVKDVLKKLLLDPEYMSLELEDLINMFLINFR
FT                 NNSLTMEGFFPSEKVLSYTPKVLIDLINPKRHTNEHGIQANNNNNNNNRNV
FT                 DIDNRPMDDRTKEVYEDPLDSLMAGDVLWYKNHDPHHQAKWLKAHFLKRMC
FT                 KNILQITIGNGITTTAHRSQIKIANDTGRRACRRMVVHVDPIVDYPDPLPP
FT                 RRTSDDEEPFAGFQECELEGASLSTVKPNRKRKIETGLALDGQPRRSKRTR
FT                 RNNFRNDFEYF"
XX
SQ   Sequence 4729 BP; 1478 A; 821 C; 1034 G; 1396 T; 0 other;
     tattatctgg cgacgagaaa aaacggcagc aatcagtgca gtgcatcacc cggacagtga        60
     ttgatttccg gcgttagcag acaagttatc tgggtttttg cttccaccat ccaaacagca       120
     gcggcggagt catcttcata ggtgcagctg gggtaaacgc aacggaacgg agtggacttt       180
     ccggagattt ggtagagccg tgagtgtttt gcggcagctg aacgacagta aatccgacga       240
     gtttattttt tctatttgga attaacggtg taatttgtat ttctgatcat attgtcggca       300
     cttgggaggt gtgattgata aaatgtcgta cgtagctccg aatattgacc cctaccgcaa       360
     agggcagtca tttgcatcgt ggtttaagcg actcgggtac cattttcgcg tcaataaggt       420
     ggcggatgag aacaagaagg atcaaatgtt ccttttgggg ggcgaatacc tgtttgaagt       480
     tgcccaaaat ttgtacctca gtgagcaatt acttgacgca gccccacttg aggaattagt       540
     tgaaaaactt aaacaaaagc ttgacaagac ggattcaact ttgatccagc gttataaatt       600
     tgggtctcgg gtacaacaag caggcgaaac agccagtgat ttcctatttt cgcttaaact       660
     gcaagccgaa tattgcaatt tcaaagacga caaaaatagt cgcattcttg atcgtgtcct       720
     cattggtctg tctgatgaca ccttgagaca aaaactcctt actgaggacg gggaaaattt       780
     taacttagcc caagcagaga aaacaatcac tacctgggaa atggcggctt ctaatgccaa       840
     agctttaaca aaggacgatg tttctgcaca aatcgcatcc ataggcagcc tcaccggtgg       900
     acggggggcg gttttgcaac gtatagcgga tttggcgcag ggccgaagta tagctcccgt       960
     gaaaagccgt ttaggttaca ggccacagta taaatcgccg gcaaggagtg tggaccgcag      1020
     cacaaggccg tacaataggt tcaacgatcg cgctcatcgc agtccgtcac ggtacaggca      1080
     gcccagacac gtacgcttcg aggattcgca tcgccgatac gaggatgcac cgctataccc      1140
     tgcagaaatg gagactaaac agcaaatagt gatcgatcaa agagtatgca gttattgcgg      1200
     agtgccggga cacgttagaa ggaagtgttt tcagctaaaa caatacaaga aagaccccat      1260
     taataacatc aacctaggaa aacctggttc tagtacggag aatactttgt cgaatatgat      1320
     gaaccagatg acgtgggatg actcaaccga tgattcagac caaggtgatt tagaatgtat      1380
     gcatatttca tccattaacc atttaagcac tccatgttta ctagaactaa ccgttgcagg      1440
     aaaaattttg cagatggaag ttgacagtgg agcttctgtt tctgtaattg ggaaaaggct      1500
     atttgatgtt agacttaatg ttcctcttaa agaaagttcg aaaaacttga tagtggtaaa      1560
     cggttccagt ttgaaagtag ctggggaggc tattgtttcg gttgaatttc aagatgtaag      1620
     gaaaaatttg aaacttttgg tgttagactg tgatcatgac tttattcctc tattaggcag      1680
     aacttggttg gatgttttct ttcccaactg gcgcaatttt ttcgacaaat tactacctgt      1740
     aaataatgtg actgattata aggttgatga cttgatgaat gatatcaagg ataaattttc      1800
     caatgttttc atcaaagact tttcgtctcc tattagagaa tatgaagccg aattggtttt      1860
     aaaaacagac acacctattt ttaggaaagc ttatgacgtt ccctacaggc taagggacaa      1920
     agttttgaat tatttagata agttggagaa ggagaatgtt ataactgcga tacaaacaag      1980
     tgaatgggca tctcctgtta ttgttgtgat gaaaaaaaaa tggtgatatt cggttagtaa      2040
     ttgactgtaa agtttcaata aataaactca ttgttcctaa tacatatcct ttacctgtag      2100
     ctcaagatct ttttgctgga ttggcagggt gtaaagtttt ctgcgcgctt gatttggagg      2160
     gcgcatatac ccaattgtct ttaacaaaac gctctagaaa atttatggta ataaacacta      2220
     ttaaaggtct ttttacttac aatagattgc cacagggtgc ttcctctagt gcatccattt      2280
     tccagcaggt aatggatcaa attttgcgag gaattgagaa tgtttatgtt tatttggatg      2340
     atgttctcat agctggaaaa aatttagagg attgcagacg gaagcttcat attgttttgg      2400
     atagattgtc cgaagcaaat attaaagtga attgggatga atgtaaattc tttgtgacta      2460
     gtttggaata cctgggacac ataattagcg aaaaaggttt gtcgccatgt gcaagtaaaa      2520
     tcgccacaat aaaaaatgca caaataccaa caaacgtaac tgagctcaaa tcatttttgg      2580
     gactaatcaa ttactataac aggttcattc cagggctgtc ttccaagtta cacagtttgt      2640
     ataatttatt gaagaacgat gtaaagttta tttggaatga tgagtgcgac aaagctttta      2700
     caaactcaaa gaatttactt cttgaaacaa attttcttga attttatgat tccagaaaac      2760
     caatcatagt agtctctgat gcttccggct atggacttgg tggagttatt gcacattcta      2820
     tagacggtgt agagaaaccc atttgtttca cttcattttc actcaattct gctcaaaaga      2880
     aatatcctat tctacatttg gaggcacttg cactagtatg cacaataaag aagtttcata      2940
     agtatcttta tggacagaag ttcactgttt ttaccgatca taaacctctg gtaggaattt      3000
     tcggaaaaga gggtaaaaat gctatttttg tgacaagact acagcgttat attctggaat      3060
     tgtcaattta cgagtttgac atccagtaca ggccttcttc aaaaatgggt aatgctgatt      3120
     tttgttcgcg ttttcctttg gagcagtcag tacctaaaga tctagattta gattgtatca      3180
     aacacattaa ttttagcagt gattgtccaa ttgactttac aaatattgcc aaaaacacga      3240
     aagctgattc ctttttacag cgtattataa gttttatgcg ccacggttgg cctaaaaaga      3300
     tagaaaaaaa tttcaaggat gtttttgcaa accaacatga cttagaaata tttgaaggat      3360
     gtttgttata ccaggataga gtaatcgtgc cgcagaattt gcaaattgag attttaaaac      3420
     tgttgcatgc caatcatgtt ggtatggtga agatgaagca tttggcaaga cgttcagtgt      3480
     attggtacgg gatcaatgct gatattgaaa attatgtcag tgaatgtgaa acttgtgcta      3540
     gtttggcagt gcatccaaag cagaaaattg attcaaaatg gacaccttcc actagaccat      3600
     ttggtagggt acccattgac tttttctact tcaagcacca tgtttttcta ttgatcgtag      3660
     atagtttttc taaatgggtg gaagttgagt ggatgaaaaa cggtacatct tgtccaaagg      3720
     ttattaaaaa gttattagca tattttgcta gatttgggtt tccagatatt ttagtatcag      3780
     acaatggtcc tccattcaat tctcatgatt ttaagaactt tcttgaaagg caaggaataa      3840
     gagtcctaaa cagtcctccg tacaatcctg ctagtaatgg ccaggctgag agacttgttc      3900
     gtacggttaa agatgttttg aaaaagttgc ttcttgaccc cgaatacatg agtttggagt      3960
     tggaagacct gataaacatg tttttgataa actttagaaa caatagtctg acaatggagg      4020
     gtttcttccc ttccgaaaaa gttttatcgt atactccaaa agtgttaatc gatttgatta      4080
     atccaaagcg acatactaac gaacacggta tacaggctaa taataataat aataataata      4140
     atcgtaatgt tgatatagat aatagaccaa tggatgatcg taccaaagag gtttacgaag      4200
     atcctttgga tagtctgatg gcgggagatg tactgtggta taaaaatcat gatccccacc      4260
     accaggctaa atggttaaaa gcgcattttc taaaacgtat gtgtaaaaat attttacaga      4320
     tcacgattgg aaacggaata acaacaacag ctcacagaag tcaaatcaaa atcgctaatg      4380
     acaccggcag acgggcgtgt cggaggatgg tggtacatgt cgatcctatt gtcgattatc      4440
     ccgatccatt accaccaaga agaacgagtg acgatgagga gcctttcgct ggtttccagg      4500
     agtgcgaatt ggaaggagcc agcttatcaa cggtcaagcc gaatcgaaag agaaagattg      4560
     agacaggttt ggcgctcgat ggccagccac ggcgttcgaa gagaacgcga agaaataatt      4620
     tccgaaatga ttttgaatat ttttgattga tacgtttaat taatttgtga gttcataaat      4680
     gatttttttt aacttcgaga ttaacgaata tctataaaaa gggaaggac                  4729
//
ID   Gypsy-186_AA-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   supercont1.123;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-186_AA_;
KW   Gypsy-186_AA-I; Gypsy-186_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-311
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.123; Positions 2368797 2369107.
XX
SQ   Sequence 311 BP; 99 A; 57 C; 53 G; 102 T; 0 other;
     tgatatgtcc tcgaaaatgt ttcaaacatt tctagagtgc atttgctata aagtaaacat        60
     tattaatttg tacatgaatt tagtataatc gaataagagt gcatttgcta taaaaacctt       120
     tatagtaaat gccttcgaaa taaatcaccc gatatctgtc gggcctcttg gattgtagac       180
     accgaacgat aaggacgttt tcccgtgcaa gctccgaaag tctcttcaac cgatctttaa       240
     tagtttagaa gtcttactga gtgtgaaccc cctctggtga tttaattgtt ttaaagtata       300
     aaacccgtac a                                                            311
//
ID   Gypsy-187_AA-I repbase;    DNA;    INV; 5385 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-187_AA_;
KW   Gypsy-187_AA-LTR; Gypsy-187_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5385
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions 1952981 1958365.
XX
CC   Positions [2297-2797] - Reverse transcriptase
CC   Positions [3932-4399] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1718..5275
FT                 /product="Gypsy-187_AA-I_2p"
FT                 /translation="MDVLMVSASRRSSTPYLIDAIVGGKNLQMEIDSGSAV
FT                 SVLCRQTYEKKFKNYPISTCRMKLAVVDGAHLMVVGQFDVSVKLNGQRRTV
FT                 QVVVLESKKIFTPLFGRDWLDVFFSAWRDAFQPVSVNYTTVTREVTVEEDI
FT                 KSKFPNVFDNDFSTPIKDFEADLVLKEDKPVFRRSYEVPYRVRDKVIEHID
FT                 SLERDSVITPVDVSEWASPVIIVAKKDNGIRMAIDCKVAINNVILPNTYPL
FT                 PLVRDLFASFSGSKVFCSLDLAGAYTQLRLSENSRKIMVINTIKGLYSYNR
FT                 LPQGASSSAAIFQKVMDQVLYDSEGVSCYLDDVLIAGKDYEECKKRLYLVL
FT                 ERLSKFNIKVHSKKCKFFVSSLPYLGHVLTDQGLLPCPEKIQTIRRAIAPK
FT                 NVTELKAVLGMVNYYGRFIPNLSSHLSTLYNLLKKDSKFVWSKNCDDTFEL
FT                 CKHLLLNSKLLEYYDPEKPIVVVSDACGYGIGGVIAHVVGKEERPISFTSF
FT                 SLNDAQKSYPILHLEALAIVSTIKKFHKYLYGKKFTVYTDHKPLIGIFGKE
FT                 GKNSIFVTRLQRHIMELSIYDFDIMYRPSAQMGNADFCSRFPLPQEIPKDL
FT                 LRDHVKNINITTELPLDWMTIAKETKNDEFLQKGLFFLQYGWPKKLEKRFR
FT                 DVFSQHQDMELLDGCLLFQDRVVIQVSLHAAVLKLLHRNHAGIHKIKQLSR
FT                 RTVYWYGINSDIESFVKNCHTCNQMAVVPKKPSQITWIPTSRPFSRIHADF
FT                 FYFDHKVFLVIVDSYSRWLEVEFMRSGTDAKRVKSKFMSLFARFGLPDVIV
FT                 TDGGPPFNSRYLIDFWEKQGIKVMKSPPYHPSSNGQAERMVRVVKEVLKKF
FT                 LLDPQMRELDIEDQISCFLFNYRNTCTEDSSFPSEKMFKFKPKTILDLVNP
FT                 KSSYKKHLTTPKEEQSIGFNADECKKDKLAKLRTGDPIYFKNFKPTDVRRW
FT                 LEAIFLKQISPNVFQISLGGRTYTAHREQLKLRRKSPNRIVCGTSEMDKER
FT                 SREKMNGQDRNQDQDLDNDFYGYVFDSCLFNIPSGNSLPYSTISGSSLPSS
FT                 SVSGNSLPSSSASDSGLSRSSAHGNSLPVTEHSGNCVPIRTPLTHTDGSTR
FT                 QLNEDSVGRTECPNGPSVTTAVDLLDPINKPLQLPGSRQRKTRRNRNKDEA
FT                 FGNRSDLNLRRSLRSKRKTNSDEYEYY"
XX
SQ   Sequence 5385 BP; 1620 A; 927 C; 1183 G; 1655 T; 0 other;
     ttataactgg cgtacgaggt gaaatttttt ttttcaattc agttgaagtt taagctgtga        60
     ttaagaacaa ttatagtttt gtgaggtgat actagttatt ggtagaattt aattctactg       120
     atacagtttc taaagccgtt tcgctcatct caagtgtggt gatgccaagg cggcaaggag       180
     tttatgttga aatctcatca cagcagtgtt taattcgcac gttttgcgaa aaagttttcc       240
     aatagtttac tacagagttt cttcataaaa aaaagtaaaa cctgtgaaaa gtgtttaaat       300
     cgcaaaggac gcgtgtgttt aagatcggct tctactgcat cgcccattgt tcagtttggc       360
     gtaatataat agcgttgtgt gtttgaccgg agacaaagcc tggcatcgca gatcagtttt       420
     ttgtagctga ccacaatagc tttggaaatt ttcatcgcgt caaccagcat ccattcccag       480
     tataagcttg tagtgtgtgt tgaagttttt ggtaccgctt agactggtcc acatcatcgt       540
     ttgaagacaa cacgttgact aaccaggtat gttttaaatt gttttatcgt ttttggttta       600
     atttgttttg ttgtgattgc gattgtgcgt gtttgttttt ttttccgaag ttatttaaaa       660
     acttgagcaa tttaagtttg ttttcttcat catttgtgtc tctctgggag tagtttaaaa       720
     tttatgttag tacaacatat tatgtgtttg tagttgatat ttttttcata aaatatcaaa       780
     aattatacaa atttagaagt tgattttttt tcgtttctct gtttgtttct aatttttatt       840
     aaagtggcaa tgccaattat gagtacaatt gaaccgttcc atccagatgg aagcataact       900
     ttctcgcaat atctggatca actggagtgg atttacttgc atcaaaaagt agcagatggg       960
     gataagaaga ctacattcct tgcatcgtgt ggtaccgctg tctacagtga gctcaggttg      1020
     ctgtaccctg gccgaaactt gaaagatatt gaatacaaag atttgacaga ttcgctacgt      1080
     aaacgtttcg acaaaagtga aagtgattta gtccaacgta tcaaatttta tgcgagggtg      1140
     cagaaacctg gcgaaaaagc cgtagatttt attctggcgg taaagcagct ggcagagtac      1200
     tgtaagttcg atacgtttaa agagacggca attcgtgaca agttgctgtg cggtatttca      1260
     agtaaacagc tacaggagcg gctcttagat gaagaagatt taactcttgc tagggccgag      1320
     cggatcataa ctaaccgtga agaagcgatg gaaagggcta gtctgatgaa tgaaccagaa      1380
     acaggtagag ttagtgccat tgaacgtttt ggaggtagta agagggttga ttttcgtcga      1440
     gatggttcac cgccaccgtc taggagtagg gttcggaatc acgatcttcg taaccgtttg      1500
     aacgacagcc ggagtagtag caggagccgt tctgaatcca gaaagcgggg ttaccagcca      1560
     tactactgta cgtactgtcg cagaaagggt catactcgca agtattgtta cgatttgaag      1620
     catcataagc catcggtaaa atctgtagtt gtcgagacga agaaaccaga cctctctgac      1680
     cgtttcaaga gagcaactat cggattctga agaggaaatg gacgttctca tggtgtctgc      1740
     tagtcggcga tcaagtacac cttacttgat tgatgctatc gtcggcggta aaaacttaca      1800
     gatggaaatc gacagcggtt cagcagtgtc cgttttgtgc agacaaacgt atgagaagaa      1860
     gttcaaaaac tacccaataa gtacctgtcg tatgaagctg gcagtcgtcg atggagctca      1920
     tttgatggtc gttggtcagt tcgacgtgtc ggtgaagctt aatggtcagc gtagaacagt      1980
     tcaagtagtg gtcctggaaa gcaaaaaaat cttcacacca cttttcgggc gtgactggct      2040
     agacgtattc ttttcagcat ggagagacgc cttccaacca gtttctgtaa actacacaac      2100
     cgtgacgagg gaggttaccg ttgaagagga tataaaaagt aagtttccaa atgtttttga      2160
     taatgatttc tccactccaa taaaagattt tgaagcagat ttggttttga aggaagataa      2220
     accagttttt aggcgatcat atgaagtccc atatcgtgta agagataagg ttattgaaca      2280
     tattgattct ttggagaggg atagtgtaat tactcctgtt gacgtcagcg aatgggcttc      2340
     tcctgtaatt atagtagcga agaaggataa tggtattagg atggcgattg attgcaaagt      2400
     cgccataaat aatgttattt taccgaatac ctatccgctt ccattggttc gagatttgtt      2460
     tgcatctttc tcgggttcta aggttttttg ttcactcgat cttgctggag cttacaccca      2520
     gttacgtctt tccgaaaatt caagaaaaat tatggtaatt aataccataa aaggtttgta      2580
     ctcatacaat cgcctgccgc agggagcatc tagcagtgca gcaatttttc aaaaagtaat      2640
     ggatcaagtt ttgtatgatt cagagggggt ttcttgttac cttgatgacg tgttgattgc      2700
     tggtaaggat tacgaagaat gtaagaagag gctttatttg gtcttagaac gtttgtctaa      2760
     gttcaacatc aaagtacatt caaagaaatg caagtttttt gtttcaagtt tgccttattt      2820
     aggacatgtg ctaacggacc agggtttgtt gccatgtcct gagaaaattc agacgattcg      2880
     tagagctata gctccgaaaa acgtcacgga attgaaggca gttttgggta tggtgaacta      2940
     ttatggtcgt ttcattccca atttatcctc acatctcagc acgttgtata atttgttgaa      3000
     gaaggactct aaatttgttt ggagcaaaaa ttgtgatgat acctttgaat tatgcaaaca      3060
     cttactatta aactcaaaac ttttggagta ctatgatcct gaaaaaccaa tagtagttgt      3120
     ttctgatgcc tgtggatacg gcataggagg agtaattgct catgttgttg gtaaagagga      3180
     gcgacccata agttttacat ccttttcgtt aaatgatgcg cagaagtcgt acccgattct      3240
     gcatctggaa gcattggcga ttgtcagtac tataaaaaag tttcacaaat atctgtatgg      3300
     taaaaagttt actgtttaca cagaccataa gcctttgatt ggcattttcg gaaaggaagg      3360
     taaaaattca atttttgtaa cacggctaca acgacacata atggaattat caatttacga      3420
     ttttgatatt atgtatcgtc cgtctgctca aatgggtaac gcagattttt gttctcgttt      3480
     ccctttacct caagaaattc ctaaggattt gctgcgtgat cacgttaaga acatcaatat      3540
     caccactgaa ttaccgttag actggatgac gattgcgaag gagacaaaaa atgatgaatt      3600
     tctacaaaaa ggtttgttct ttttacaata tggttggcct aaaaagttgg aaaaacgttt      3660
     cagagatgtc ttttcacaac atcaagatat ggaactgttg gatggttgtt tactttttca      3720
     agaccgtgta gtaatacaag taagtttgca tgctgcagtg ttgaaactac ttcatagaaa      3780
     tcatgcaggc attcacaaaa ttaaacaact atccagaaga acagtttatt ggtacggaat      3840
     caacagtgat atagaaagtt ttgttaaaaa ttgtcatact tgtaatcaga tggctgttgt      3900
     tcctaagaaa ccatctcaaa taacctggat tcctactagt cgtccattta gtaggataca      3960
     tgctgatttc ttctactttg accacaaagt tttccttgtc atagttgata gttactcgag      4020
     gtggcttgaa gttgagttta tgcgaagcgg aactgatgct aaaagagtta aatctaaatt      4080
     tatgtctttg tttgctagat ttgggttgcc tgatgtcatt gtgactgatg gtggtcctcc      4140
     gtttaattcc agatatctca tagacttctg ggaaaaacag ggcatcaaag taatgaaaag      4200
     tccaccatat cacccctcta gtaacggcca agcagaaaga atggtacgtg tagtaaaaga      4260
     ggtgttgaag aagtttttgc tcgatccaca aatgagggaa cttgacattg aagatcaaat      4320
     atcttgtttc ttgtttaact atcgcaacac atgtacagag gactcaagtt ttccctctga      4380
     aaaaatgttt aaatttaaac caaaaacgat tctcgatcta gtcaatccaa aaagtagtta      4440
     taaaaagcat ctgacgactc caaaagagga gcaaagtatt ggttttaatg cggacgagtg      4500
     taaaaaggat aagttggcca agttacgaac aggggatcca atttacttca aaaacttcaa      4560
     gccgacagat gtgagaaggt ggctggaagc tattttcctt aaacaaatat ctcccaatgt      4620
     tttccagatc tctctaggag gacgcacata cacggctcat cgcgaacagt tgaagttgag      4680
     acgcaagtcg cctaaccgca tcgtttgtgg aactagcgaa atggataagg aacgttcaag      4740
     ggagaagatg aatggccagg accggaatca ggaccaggac ttggataacg atttttatgg      4800
     atatgttttc gattcatgtc tgttcaacat accatctggc aatagtttgc catactcgac      4860
     aatttctggc agtagtttgc caagttcatc agtttctggc aatagtttgc caagttcatc      4920
     agcctctgac agtggtttgt cacgatcatc agctcatggc aatagtttgc cagtaaccga      4980
     gcattcaggc aattgtgtgc ctattcgaac tcctttaaca catactgacg gatcaacgcg      5040
     gcagctcaac gaagattcgg tcggaagaac ggagtgccca aatggcccat cggttacaac      5100
     tgcagttgat ctactcgatc cgataaataa gcctctacag ttaccagggt ctaggcaaag      5160
     gaaaacaaga agaaaccgta acaaagatga agcatttggt aatcgcagtg atttaaattt      5220
     aagaagatct cttcgttcaa agcgtaagac gaacagtgat gaatatgaat actattaatt      5280
     tgaattttat tcggtctata ttattgtaaa tagtaattcg ttcagttaga tgaaatatga      5340
     acatgtttta aatgaattgt aataacaatc tcgagaaggg agaac                      5385
//
ID   Gypsy-187_AA-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-187_AA_;
KW   Gypsy-187_AA-I; Gypsy-187_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions 1952816 1952980.
XX
SQ   Sequence 165 BP; 48 A; 30 C; 36 G; 51 T; 0 other;
     tgtagtggtc actgtgagtg attgagtgcc actacgggtt cgtcatactt ttgaaataaa        60
     gttctgatca gtgtttgtca gagcatgcaa gctgaaacaa ctcggtgttg tatctcaagc       120
     atccgaagat tattataaaa ccctttactg tgcatataac agaca                       165
//
ID   Gypsy-188_AA-I repbase;    DNA;    INV; 7434 BP.
XX
AC   supercont1.105;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-188_AA_;
KW   Gypsy-188_AA-LTR; Gypsy-188_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7434
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.105; Positions 1884281 1876848.
XX
CC   Positions [3069-3572] - Reverse transcriptase
CC   Positions [4567-5043] - Integrase core
CC   'AGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           412..2262
FT                 /product="Gypsy-188_AA-I_1p"
FT                 /translation="MSFPHADYLTNEEINYELVLRNYKEETDKDIPTKLRL
FT                 LRKLFQTDQKEGRDYRSPYRFEQEVDIISNRVLLIQQEWQGKEGDPRLVSR
FT                 LKHYYLRVRRGKTTDKEVENTRRELLRSISETLRTVTDKYPGDDESKTNPG
FT                 TLQGHENQTARDLGAYPKNLPLQSKPDDDFKDPKSSQPTYEELQEKIRELQ
FT                 SAIQQMRTQGSQGHERRSRNWKQSEPGPDDLGSDISEPEMVKQHDKEHISN
FT                 SSKQRATRTLEYRTDVSDSGGDEVRRTNRQFVDQIPYRHREYRHNPNREDE
FT                 RRRNRISSDDRFSAGGSYSTDGYHHRNGRQIRRIEHWKLSFSGDNRTVSVE
FT                 NFLYKLKKIAAREGVSQQGLLRDIHLVLDGQASDWFFTYVDEFEDWEDFEE
FT                 KIRFRFGNPNQDQGIRQKIHERKQLRGESFSAFVSEIERLNKMLSRPLSKR
FT                 RKFEVVWDNMRPHYRSKISIVRVRDLEHLIQLNHRIDAADSSFQIHNEFRN
FT                 TEQRNQRNVHQIECASSQDECDEPEGVDVVDARLDHRGQMSRRRVQPTFAQ
FT                 NTSKTNQQQTSESTGNACWNCRKTGHNWRDCKEPRAIFCYGCGELGRTIRS
FT                 CQRCAESNRRWNAPIQGNQ"
FT   CDS           2235..3719
FT                 /product="Gypsy-188_AA-I_3p"
FT                 /translation="MECTNPGKPVRECAMGTTDIPIEIKVPTEKGYFDPVD
FT                 RIHTIKIQTKKCPYLRVNVFDTEILGLLDSGAGISVVNSLELSEKYGLKLQ
FT                 PTRLRVCTADNTEYRCLGYLNVPYTYKNVTRVVPTVVVPQISKPILGCNFW
FT                 RSFGISPMADLGNGPEQVGSFAETEEAFAFTLEPIGELPRIESTGNDTTLD
FT                 VPTFDIPEESQEPTVETLEVEHELTDKERQELIQAIKQFPFTSSNNLGRTH
FT                 LIEHEIVLKEGAKPKNQVMYRSAPAIQKEIDAEIQRFKDMDVIEECYSEWT
FT                 NPLVPVRKSNGKIRVCLDSRRLNTMTVKDSYPIRNMLEIFQRLENAKYFSI
FT                 IDLKDAYFQIPLKEECRNYTAFRTTKGLFRFKVLPFGVTNAPFTMCRLMDK
FT                 VIGFDLIPSVFVYLDDIVIASRTLKEHLRLLKVVAERLKNANLTISLEKSR
FT                 FCRKQVKYLGYLLTERGVAIDGSRISPILDYARPKTVKDVRRLLGLAGFY"
FT   CDS           3757..5424
FT                 /product="Gypsy-188_AA-I_2p"
FT                 /translation="MELKSVLTSAPILANPDFAKPFIIESDASDTAVGAAL
FT                 IQEQEGENRVVAFFSKKLSRTQRAYSSVEKECLGVLLAVENFRHYVEGSRF
FT                 KVITDARSLLWLFTIGVESGNSKLLRWALKIQSYDIQLEYRKGANNITADC
FT                 LSRSLNVLDLSSHDEEYEELAENIQAEPEKFPEYRVSDGNIFRYVKSKHRT
FT                 EDNRFRWKLIPKEAERTEIIKREHEIAHFGFEKTLQGLKRRYYWSGMAKEV
FT                 RNLCQKCLKCQTSKSGNTNVNPPMGGQKEFVEYPWQFVTLDYVGPLPASGK
FT                 GRHTCLLVATDVFSKFVLVQPFREAKASSLVEFVRNMIFLLFGVPEVILTD
FT                 NGTQFTSKAFRDLLSEYGVNHWLTPSYHPQVNNTERVNRVVTTAIRATIRQ
FT                 HKDWAENLQSIACAIRNAVHESTKYTPYFVVFGREMVSDGKEYQRLRQGSG
FT                 NTSGENSQDKRKRLYEEIKQHLSKAYERHKRTYNLRSNAECPTYIAGETVL
FT                 KRTFEQSSKAKNFCAKLAPKYELAVVRKTLGKHCYELEDLQGKRLGVFYGS
FT                 HLKKMHPQS"
XX
SQ   Sequence 7434 BP; 2267 A; 1498 C; 1737 G; 1932 T; 0 other;
     ttttggcgcc caacgtttag aaggcagaca cattttttga atttttggcg cttattggac        60
     aattgcacat ttttgagaat ttctttcgtt ttttgcacat aatactaaaa caaaaacata       120
     tatacacaat acaaatcaat taatttatta tcgtatgcgg tatttttcat atataatcct       180
     tttcataatt ttttttttac acataattca cacacatata tatatatatt atcatattta       240
     tatcattaca attataagca ttttgttgtg tgaaagaaat attcgtagtt gtatgttgtg       300
     tacaaatttg tgccgttcta aaattttctt tgtaaataga catttaaagt gaacttgtag       360
     ttattttttt tattattcat aagccttgca cattctctaa taattataaa aatgtcgttt       420
     ccacacgctg attatttgac taatgaggaa ataaattatg agctggttct gcgaaattac       480
     aaagaggaaa ctgacaagga tattccaacg aaattgcgat tgttgcgtaa actgtttcaa       540
     acggatcaaa aagagggaag ggattacaga tcaccttaca ggtttgaaca ggaggtagac       600
     ataatctcca atagggttct actgattcaa caggaatggc aagggaaaga aggggatcct       660
     aggctagtct cgcgattaaa acattactac ttgcgagttc gaagggggaa aactacagac       720
     aaagaagtag aaaacactag gagggaactt cttaggtcta tttcagagac tcttcgcacc       780
     gttaccgata agtacccagg cgatgatgag agcaaaacga acccgggtac actgcaaggt       840
     cacgagaatc agactgctag ggatttgggt gcatatccca agaacttgcc gttgcaatcg       900
     aaaccagacg atgactttaa ggatccaaaa tcatctcaac cgacatacga agaactacag       960
     gagaagattc gtgagctcca atctgctatt caacagatgc gaacacaggg tagccaaggc      1020
     catgaacgga gatcacggaa ctggaagcaa tctgagccgg gaccagatga cctgggtagc      1080
     gatatcagtg aaccagaaat ggtgaaacaa cacgacaagg aacacatctc aaacagtagt      1140
     aaacagcgag caacgagaac tctagagtat aggaccgacg tatccgacag cggaggcgac      1200
     gaagtgagac gaaccaaccg acaattcgtg gaccagattc cgtacagaca cagggaatac      1260
     aggcataacc caaaccgtga ggatgaacga cgtaggaata ggatatcgag cgatgatcgg      1320
     ttcagcgcag gtggatcata ttcaacggac ggttatcatc accgaaacgg tcgacaaatc      1380
     cgaaggatcg aacactggaa gctctctttc tcaggagata acaggacagt ttcagtggaa      1440
     aacttcctgt acaagctgaa aaagatcgca gcaagggaag gagtatctca gcaaggtctg      1500
     cttcgcgata tacaccttgt cctagacggc caggcctcag actggttctt tacgtacgtg      1560
     gacgagtttg aagattggga agatttcgag gagaaaataa ggtttcggtt tggaaatcca      1620
     aatcaagacc aagggatccg gcagaaaatc cacgagagga agcaactcag aggcgagtct      1680
     ttcagcgctt tcgtatcgga gatagagcgt ctaaacaaga tgctgtcgag accactctcc      1740
     aaacggcgga agttcgaagt ggtgtgggac aatatgcgcc cacactatcg ttcaaagatc      1800
     tccattgttc gagtccgaga tttggagcac ttgattcaac tcaaccatag aatcgacgca      1860
     gccgatagca gcttccaaat tcataacgaa ttcaggaata cagagcagag gaatcagcga      1920
     aacgtccacc agatagaatg tgcatcttcg caagacgaat gcgacgaacc ggaaggagta      1980
     gatgtggtag atgcaagatt ggatcatcgg ggacagatgt cgagaagaag agtccaacca      2040
     acgtttgcgc agaacacgag caaaacgaat caacagcaaa ccagcgaatc aacagggaat      2100
     gcgtgttgga actgtcggaa aacaggccat aactggcggg actgtaaaga gccacgagca      2160
     atcttctgct atggttgtgg ggagttaggg cgaaccatcc gttcatgtca gcgttgcgct      2220
     gaatcgaacc gaagatggaa tgcaccaatc cagggaaacc agtaagggaa tgtgcgatgg      2280
     gaactacgga cattccaata gaaattaagg ttcccaccga aaaaggctat ttcgacccag      2340
     ttgaccgcat acatacgatc aaaattcaga caaaaaaatg tccttattta agagtaaacg      2400
     ttttcgacac cgagatccta ggattattag actcaggagc gggaatcagt gtggtgaact      2460
     cgttggagtt gtcggaaaag tacggtctga agctccaacc aaccagactt agagtttgta      2520
     ctgccgacaa caccgaatat cgatgcctgg gatatcttaa cgttccgtat acatacaaga      2580
     acgtgacaag agttgtacca actgtagtag tcccacagat atctaaaccc atccttggct      2640
     gcaatttctg gcggagtttt ggaatttcgc ctatggcaga tttagggaac gggccggaac      2700
     aagtgggaag tttcgcggaa accgaagagg cattcgcttt cacccttgaa ccgataggag      2760
     aacttccaag aatagagtcc acgggaaatg atacgacact tgatgtacca acctttgaca      2820
     tcccagaaga atcgcaggag ccaacggtag aaacgctgga ggtagagcac gaattaaccg      2880
     ataaagagcg tcaggagtta attcaagcta tcaaacagtt tccgttcacc agcagtaata      2940
     acttaggccg gacgcacttg atcgaacacg agattgtgct taaggaggga gcaaagccta      3000
     aaaatcaggt aatgtaccgc tcagcaccgg ctatacagaa agagattgat gcagaaatcc      3060
     aacgatttaa ggacatggac gtcatagaag agtgctacag cgagtggacg aaccccttag      3120
     tgccggtcag gaaatccaat ggcaagataa gggtttgcct ggactcgcgt agacttaaca      3180
     cgatgacggt taaggatagc tatcccataa ggaacatgtt ggagattttc caacgattag      3240
     aaaatgcgaa atatttttca atcatagatt tgaaagatgc ctactttcaa atcccgctta      3300
     aagaggaatg ccggaattac acagccttcc ggacgactaa gggactcttc cgatttaaag      3360
     ttttaccatt tggagtgacc aacgcccctt tcaccatgtg taggttaatg gacaaggtca      3420
     ttggtttcga cctgatacct tcggtgttcg tctatcttga cgacatcgtg atcgcgtcta      3480
     gaactttaaa ggagcatttg agactactga aagttgtggc tgaaaggttg aagaacgcca      3540
     acttaacaat atccctcgaa aagtctcgat tctgccgaaa gcaggtcaag tatctagggt      3600
     atctgttgac cgagcgcggc gtggcaatag acggctctag aatctcgcca attttggact      3660
     acgcaaggcc aaaaaccgtt aaagatgtac gccgattgct ggggttagca ggtttctact      3720
     aaatttgaat ggacggaggc tgcggaggac gcgttcatgg aattgaagtc agttctgact      3780
     tctgcgccaa tactggccaa tccagatttc gctaaaccgt ttataatcga aagcgatgct      3840
     tcagatacag cggtgggcgc agctttgatt caagaacagg aaggggagaa cagagtagtg      3900
     gcgtttttta gcaaaaagtt gagccgaact cagcgagcgt attcgagcgt agaaaaggag      3960
     tgtttgggtg tgctactagc ggttgaaaac ttccgccact atgttgaggg gtcacgtttt      4020
     aaggtgatta ctgacgcacg aagccttctg tggttgttca ccatcggagt agagtccggc      4080
     aactcgaaac ttctccgatg ggccttaaaa atacagtcat acgacattca acttgagtat      4140
     cggaaaggag cgaataacat cactgcagac tgcctgtccc gttcgttgaa tgtgctagat      4200
     ttatcatcac acgatgaaga atatgaagaa cttgccgaga atatacaggc cgaaccggag      4260
     aaatttcctg aatatcgagt gtccgatgga aacattttcc gctacgtaaa aagtaagcat      4320
     cgaacggaag ataatcggtt tcgatggaag ctgataccga aggaggcaga gcgaaccgag      4380
     atcattaaga gagagcacga gatagcacat tttgggtttg agaagacttt gcaggggctc      4440
     aaacgtcggt attactggtc gggaatggcc aaagaagtca ggaatctctg tcaaaagtgt      4500
     ttgaagtgcc agacgtcaaa atcaggaaac actaacgtta accctccgat gggaggtcag      4560
     aaggaatttg tagagtatcc ctggcaattt gtgacgctgg attacgttgg tcctctgcca      4620
     gcttcaggga agggaagaca cacgtgctta ctcgttgcca ccgatgtttt tagcaagttc      4680
     gtgttagtcc aaccgtttcg tgaagcgaaa gccagttcac tggttgaatt cgtacgaaat      4740
     atgattttct tgctcttcgg agttccagaa gtgatactga cggacaatgg aactcagttc      4800
     acttccaaag cgttccgaga tctcctgtct gaatatgggg tcaatcattg gcttaccccg      4860
     tcgtaccacc cacaggtgaa caacacagag agagtaaacc gggtggtaac gacagcgata      4920
     cgggccacga ttaggcaaca caaagattgg gcggaaaatc tgcaatcgat tgcgtgtgcg      4980
     attcgaaacg cagtacacga gtccaccaag tacaccccgt actttgtagt gttcggtcgg      5040
     gagatggtgt cggatgggaa agagtaccaa agattgcgac aaggttcggg taacacaagt      5100
     ggtgaaaatt ctcaagacaa gcgaaagaga ctgtatgagg agataaaaca gcatctctcg      5160
     aaagcatacg aacgccacaa gcgaacatac aatctgcgat cgaatgcgga atgtcctact      5220
     tacatcgctg gggaaacggt actgaagcga accttcgaac agtcgagcaa ggcaaaaaac      5280
     ttctgcgcga agctagcacc gaagtacgaa ctcgccgtag tcaggaaaac tttaggaaaa      5340
     cactgctacg agcttgagga ccttcaaggg aaacggctag gcgtctttta tgggagtcat      5400
     ctgaagaaga tgcacccaca gtcttagaca actttttttc aagctatgaa cctcttcgga      5460
     gtgacctttt ataaaaaaaa cacgcctacg ggttcataaa tcaccgagtc actaaggtga      5520
     ccaatgactt tttcaaagct atgtaacgtg agagactatt ttcaaaaata ccttcgggga      5580
     aagtcatacg tcacatagtc gattggattg gggtgagaaa tggtttagga tcaccattgt      5640
     cgattgtaga gtgtccctgg gcgatgattt ctcactgaag tagtaagaat catcaagcat      5700
     agaaggagct gggcgatgat ctgataagta gtagtggcaa cacgaagact acagagagcc      5760
     taagtgatga cttccgatcc ttagtactca gtactaagtt agtactgatt cttatgaagc      5820
     aaggaaggag cccatgtttg acctctggcc ccaattgacc atacggtggc tctaaatcac      5880
     ccatcactgt gattgatcgc ctgtaatgac gtcatctcac atggaaaatt cgatggacaa      5940
     tgaaaactca agctatgaaa acttcccctc gaagcaacta aggtatttcc atgaaaatct      6000
     ccacgaaaac accttcaagg gcaaaagaat caaagaataa agggagttga gactacgaaa      6060
     cgtaatcctc ccatgtacat aatgtaaata ttagattagt tagttagtac gcgcctaacg      6120
     ccctacggta atgctattat tagtacctta aaattagatt aattagtaaa gtaaattcac      6180
     tcacgattct tattggaatt agcccttcgt tttcgtcctt cgatttagta tccagtccta      6240
     gttgcatttt ttcattcagt catcgttttt ggttgtccag atcttcttta tcgacagtgt      6300
     ttattttcgt ccttctatgg cgtttctgaa tagttcgtcc gtcttcgttc gcgtttaagt      6360
     tatccagtcc atcgtttgtt atatatatcc gtccttgtgc tattcgaagc aattcttgta      6420
     atccagttag ccaatcaatc actagaacca gtttccaatt aaaataatcg cccatgccat      6480
     tgttgaacgg ttgaacttcg tagatgttgc ttcacctaaa aatagaaaat caaccctccc      6540
     cgagcccgaa caacagttca attagccaca acaaccaacg atacaattaa ttttaaactt      6600
     tccgttatgt tttcctccat ccttgtagta tttcatcgta aaaactttaa attccgagcc      6660
     agctccaaat acaatttgca cttttctatt tttttccact ttttgttttg cttgttttga      6720
     cgtttgtgtt cagttttgtt ccgttaagtt ggtagcgcat gagtgggtga gttacaaggg      6780
     agtgagtgac ggctcgttcc cggagtgacc gatcgagggg tgattcattg tttgtggtat      6840
     tgtacgttct cataatattt cgaatgaaat atttatgatg aaaaatttta aatttatgtt      6900
     gtttgtgtgt tgtgaaatgt gttcggactt atgtctggag tattttcgca gcacactgtt      6960
     taaagtggaa agcggctgtg atcatatgtt tcgggtagaa tatctggagg gatcgcagcc      7020
     aggattcact agtccattta ttgtggaaag tgaacgcggt caagtattcg aaacatgttc      7080
     tggagtagac tgacgttcag gattcacagg ttcttgttgt gggagtttta cggacactgt      7140
     cttagttttc ggctcatggt ggctggagta gaagacaggg gtcctagttc atgtttactt      7200
     ctctggagtt aaggcctact ccagatgaaa gtattttatt gtcacgtttt ttttttaatg      7260
     ttgttgtgtg tatgcgttgc ctgccaactg acattttttc aattaaatag cccaatcatt      7320
     tttcttcaat agaatcaaaa atcagctgga acatttttag ggtttaaccc tacgaaaatt      7380
     tgattgaaat tctctcaatt tcaatcaaat tttcgtacct ttagtagagg ataa            7434
//
ID   Gypsy-188_AA-LTR repbase;    DNA;    INV; 1974 BP.
XX
AC   supercont1.105;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-188_AA_;
KW   Gypsy-188_AA-I; Gypsy-188_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1974
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.105; Positions 1876847 1874874.
XX
SQ   Sequence 1974 BP; 559 A; 423 C; 406 G; 586 T; 0 other;
     tgtagcatgg tcactttttt gtaaatatta ttttaagatt tattcaatat aaatatagat        60
     gtacataaat tgttacataa ttatattgtt ttttcatgtt cttcaatgtt aatttattat       120
     tcgtgttaaa ttatttttca tttaatcata tatcatttca ttgccaaatt taacaaattc       180
     aatagttcac ttaaatatat gcgatattca atatcacagt tcaaaatgaa atgcactttt       240
     ccaaaaccgc atacaaaact tgcatacaag tcgccttcta ccaatactat atcaaataaa       300
     agtccctgtc gccttacaca ctacaccacg agacaggaat aagcctaagg ttcaaagttc       360
     aagcccgaac gttaacgatc gttataaata gatcggagtc caaaaataga cggaacgata       420
     caggtcattc agatggaatg gtagcgaaag agatagcgct tcaatcggtt ctcattcgta       480
     gttgatgagg atcgtcgttt gaaaaggtcg tgaaattact tcggtgattt tacgtacttc       540
     cgtccacgaa gatgtaaaat cacaccttat ctgaggactt tcagaatctc tactcgtcca       600
     tttttgacct ggaccgtgga agaggcgaga gtgcgtgaat atttttagtg tcgcggtgtg       660
     tttaaattgt aaagttcgtt agccaagttc aaaggttacg tgcggtcaag ctagtttgtg       720
     tgtgcgtttg tgaataagaa aagccgttcg acggtttttt atttaggatc gaaatctagc       780
     gatctacggc ccaagctcgg cacactgcat ctgcaagcta aacgctgctc tcgaccccac       840
     gcttcagcgt tcagaagtcc cggtttgagg ggaaagccgg aagggaacaa accgttccga       900
     cagagcggcc accaccattt ctattacctc gtggacaggc cacgtgtgaa gcccccgacg       960
     atccccaccg tcgtcaactg cgtcatacgt caccgacgca agtgatttcc ggcgtgcgac      1020
     acttcatcaa ggagtaaatc caaaaagtcg cagttcgttg ccgtatttgg agtagtagcc      1080
     gcaataccat catcgtcgat gtgctaattt cggaatcctg ctttgccgtc ccattcttcg      1140
     tccggcactt ctgctttgcc agcccattga acggccgtcg cttctgcttt gccggcggca      1200
     ttcatcgcag catctaaaag ggtccgtgag tacaagccaa accaaactaa ccatgcgcat      1260
     gcgttaaaac cccacacaat aaccgagctc gaagataaaa agaagatgat cgataaatgt      1320
     cgatagaatt agtttagcaa atccgcacac acattaggga aagtaggaag aagaagtaga      1380
     agaggaaagg aacacacaat tatgaataaa acctaggtta tcaaatttga ataaatttct      1440
     aaatgttttt gctgttctca accagattat gtatttttgt aatatgttag tgctttccct      1500
     gtaacagttt ttttggtctt cgagatttct cacgtttcgc gtcgttctac ctgtttcttt      1560
     ttctgttttt tgtacgccag gatagactgc ctgggaaatc agtctctcca ctcacgtgtc      1620
     tgaagcgaac agggaaattt gaattagtga gttcttccag tgatgatact cgtgagtggt      1680
     gtctttttgt gtcggtagaa cgacggtcaa catcaactat tttttgagaa tcgcttaagg      1740
     cgacctctat aactgagaaa tctcgatcca ctattccttt gagttttctg tatcgtttcc      1800
     taaattgcta tttggactct tataaaacaa acccgccctg aggttgggtt tcttgccggg      1860
     caaacataac tcgacagacg gtcctcttcg gaggtggcgc taaagccgtc tgtttcttga      1920
     gccagggaac gaaacaggag acggaaaacc tttagccgta ttttacgtgc taca            1974
//
ID   Gypsy-189_AA-I repbase;    DNA;    INV; 5735 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-189_AA_;
KW   Gypsy-189_AA-LTR; Gypsy-189_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5735
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions  168512  174246.
XX
CC   Positions [3875-4351] - Integrase core
CC   'AAAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2648..4636
FT                 /product="Gypsy-189_AA-I_1p"
FT                 /translation="MDEVLGYGELEPSVFVYLDDIVVVSSAFEAHLESLKE
FT                 VARRLRLANLSINLDKSKFCLKELPYLGYIISAEGLRPNPDRVEAIINYER
FT                 PTSLRALRRFLGMSNYYRRFIPRFSEISVPLTNLWKKKPKTIVWNPAAEKA
FT                 FFQLKEKLIAAPVLANPNFLLQFQIQTDASDSAIAAILTQQHESGEKIVAY
FT                 FSQKLSPAQQAYAASEKEGLAVLTAIDKFRPYIEGTRFVVITDASSLTHIM
FT                 NGKWRTSSRLSRWSIELQGYDFEIRHRKGRDNVIPDALSRSMETASLDERD
FT                 AWYSTLYHKVLSEPDECLDYKVEEEKLLKFVPSKTDVLDFRFEWKLCVPEK
FT                 SREKILRKEHDESFHIGYEKLLDKLRTRYFWPKMATSVRKYVERCRICKEC
FT                 KPTTTSQHPIMGNARLSTKPFQILAINFIQSLPRSKSGHTHLLVILDVYSK
FT                 WTMLVPVRKIATDLIIKILEEQWFRRFSVPEVLISDNATSFLSKSFQNFLS
FT                 YYQVKHWANSRHHSQANPAERLNRSINTCIRTYVRSNQRLWDTRISEVEHT
FT                 LNNTTHSSTGLTPYMILFGHEIVTSGEEHRRDSITTDVTEAERQLQKMEID
FT                 QQIQEIVNENLKKRMRKAIELIIFDFASLLLFIRWDKRCISETSHYLRLGS
FT                 PITQNWGQPILFAL"
XX
SQ   Sequence 5735 BP; 1835 A; 1088 C; 1254 G; 1558 T; 0 other;
     aatggcgccc aatttaaaaa caaaagcttt caagagttct agaattcatt agtttcttaa        60
     gagtgtgcat aatagattac ggcaaacaaa aggattgagt gttgtagcgg tgatacggtt       120
     gcagtaaatt ggagaatcgt tctaagattc attggatcat cctactagtg cgcgaacaat       180
     tacgaaagtt aacatttttg cgggcattca ccaaattacg gtagtattgc tgcgtggtat       240
     atattgaatt acttactgtt tgttgggtct tgattcgact gacagttcga agcagaattc       300
     tgtttcagat cttaaagagt gatttgattc gacttttgaa catttttcgt caagggtcat       360
     caatcggatc gcgatataga aataggatta tcaaatttat attgaatact ttttgtcagg       420
     aatcttcaac ggattcagcg tataaaacta ggattttaat tttttttctt ttgcgataat       480
     tttcggcaag aattatccgt cagattcgga atatacatct aggattttca aattgcttgt       540
     gataactcat ttagtttcgt ttttctgatt agcggaaaag aaatggatat acaatcgtta       600
     tacaaaaaga ttgatgtgtc acatctatca atcgatgagg tggaacacga attgctcatt       660
     aggaacattt tgtatggcct agacgaacat gagagtatta agcggagaaa gctaaatgat       720
     caaatgagaa aagaaagaaa caagaacaga cttgttactt gttcaatcga gtgcagagaa       780
     tgattcagaa caatctgaaa ttgagaaacg aacaaaacaa cgtgtcagta aacgactaac       840
     gtcggaagaa aacagaagaa aagaagaaaa agtatagaaa aagaaaacat aggaaggata       900
     agaaagctag gagaagcatt aggagggttc caatttctga atggaaatta aaatatgacg       960
     gcaaggatca ggggcgtcgg ttggctgaat ttctcaagga agtgaaaatg cgctgtaagt      1020
     cagaagacat ttccgataga gaactttttc gaggtgcgat ccacttattc agtggacggg      1080
     ccaaggactg gtttatggaa gggtttgaga atcgatactt ccgtagctga gcttaaacgc      1140
     gaattcttac cgccagatct agattttcag attgaaattc aggctaccaa ccgacgacaa      1200
     gctcgaggag aaaagttcgt tgactatcta catgcaaaag cttttccaat cgatgaccaa      1260
     accaatctca gatcaacgaa agtttgaaat tgtttggcgc aacatgagat acgactacaa      1320
     aaacgcatta acagggtcgc gtatcaagac tacatctagg ctaaaaaaat atggtcgtat      1380
     aatcgatgaa aacaattgga acatgtttca aaagtccaat gaaattcgcc taaaagttca      1440
     gcaggttaat gaaaactttt tctcagagca aacccaagaa aaacatggag agtgagaaaa      1500
     gcaaacagca agaggagcca aatgaggaaa ttaagaggca gagctatgtg gaccctattg      1560
     agcggtcatc caagggaact ttaaaagctc aatccgaacg ttatatacgc ccaccaatag      1620
     gcacttgcta taattgcagg aaaaatgggc accattatgg tgactactcg gaaaagcgga      1680
     agaagttttg tagattatgt ggcttttggg atgttattac ccctgaatgt cctttctgcc      1740
     aaaaaaacga gcagagctca gcttgagaag gcaagctgac gtgttgccta caaatccttc      1800
     cacaatcgag caagtttaca ccgacttaat aactaacggg tttgagccaa tttcgaaaga      1860
     ggattatttc tcagatatgg tggtcgatga gctttttgta cgaatcgccg cagataacag      1920
     accattcgca ataatatggg ttctggggag agagatatgt ggactactcg atagtggggc      1980
     tcacaggaca gttctcggat ttggctgtag aaagttggta aaagatttaa aattgaaaat      2040
     tttaaaattt tgaggggatg aaattggtgg cgaagaacca gaagatgata tggagattct      2100
     cacagctgag cagaaatttc agttggaaga ggtcaaaaag ctcttcaaaa cagcgattga      2160
     gggagaagtt ctcgaggtaa cttctctcat ttctcataaa atagagttta aggaagagtt      2220
     taaaaactct ccaccggtga gaataaaccc atatccaact tctcccgaaa tacagcgcaa      2280
     agttaacatt gaacttgata agatgctcag ttagcaggtc attgaaccga gcaagagcga      2340
     gtgggccctg agtaccgttc ctgtcctcaa acccactggg gaagtccttc tttgtttaga      2400
     cgcaagaagg ttgaacgatc ggactaggag ggatgcttat cctctcccac accaagatcg      2460
     tatattaagt aggctagggt cgagtagatt cttaaccacg attgatttaa ctagagcatt      2520
     cctacagata ccccttgacc ctagctcacg aaaatatacg gcgttctcag tgttgggtag      2580
     aggattgttc cagttcacac gactaccttt tggcttagtc aatagtcctg ctacactagc      2640
     tcggttaatg gacgaggtct tagggtacgg tgaactggaa ccgagtgtgt ttgtctacct      2700
     cgacgacatc gttgtagtaa gcagcgcatt cgaagcccac ctcgagtcgt taaaggaagt      2760
     tgcccgtcgc ttgcgattgg ccaacctgtc aataaatctc gataaatcga aattctgcct      2820
     gaaagagtta ccttacctcg ggtatattat ttcagctgaa ggcctacgac cgaacccaga      2880
     ccgtgtcgag gctatcataa attatgagcg cccgacatca ctacgagccc tgcgccgttt      2940
     cttaggaatg tcaaattatt atcgacggtt tattcctcgc tttagtgaga tctcggtacc      3000
     tttaacaaat ctttggaaaa agaaaccaaa aactattgtt tggaacccag ctgcagagaa      3060
     ggcttttttt caacttaagg aaaaattgat cgcagctccg gttcttgcaa atccaaattt      3120
     tctactgcaa tttcaaatcc aaacggatgc aagcgatagt gccatcgccg caatattaac      3180
     gcagcagcat gagagcggag agaaaattgt ggcatatttc tcgcaaaagc tttcgccggc      3240
     acaacaagct tatgcggctt ccgaaaaaga aggcttagcc gtactgaccg ccattgacaa      3300
     atttaggccg tatattgaag gaacaaggtt tgtggtaata actgatgcat cgtcccttac      3360
     ccatattatg aatgggaagt ggcggacatc atcgaggctt agcagatgga gcattgagct      3420
     gcaaggatat gactttgaga ttcgacacag aaaggggagg gataatgtga tcccggacgc      3480
     tctatctcgt tcaatggaga cggcctctct cgatgagaga gacgcatggt actcaacttt      3540
     gtatcataaa gtgctctctg aacctgatga gtgcctcgac tataaagtag aagaggaaaa      3600
     gcttttaaaa ttcgttccca gcaaaaccga cgttttagat tttagattcg aatggaaact      3660
     ttgtgttccg gagaaatccc gcgagaagat tctccgaaaa gagcacgatg aatcgttcca      3720
     tatcggatat gagaaacttc tcgataaact ccgaacgagg tacttttggc ctaaaatggc      3780
     tacctcagtc cgaaaatatg tcgaacggtg tcgaatttgc aaagaatgca aacctaccac      3840
     tacttcacag catccgatta tgggaaacgc acgtttatct accaaaccct ttcagatttt      3900
     ggcgattaat ttcatccaat ctctgcctag gtcgaaatcc ggtcatacac acctattagt      3960
     gatcctggat gtctattcta aatggactat gcttgtgccg gtaagaaaaa tagctacgga      4020
     tctgattatc aaaattctcg aagagcaatg gtttcgccga ttttcggtgc ctgaagtcct      4080
     aataagtgat aatgcgacga gttttctcag caagtccttc cagaattttc ttagttatta      4140
     tcaggtcaaa cattgggcga actcaaggca tcacagccag gcgaaccccg ctgagcgcct      4200
     aaaccgcagc attaacacat gtatccgaac gtatgttagg tccaatcaac gattatggga      4260
     tacacgaatt tcagaagttg aacacactct gaacaatacc actcactcgt ccacaggcct      4320
     tacaccctac atgatcttat ttggtcacga aatcgtaacc agtggtgaag agcaccgtcg      4380
     cgattcgatc actacggatg ttacagaagc tgaaaggcaa cttcaaaaaa tggaaattga      4440
     ccaacaaatt caagaaattg tgaacgaaaa tttaaaaaag cgcatgagaa aagcaataga      4500
     gcttataatc ttcgatttcg caagcctgct cctgtttatc aggtgggaca aaaggtgtat      4560
     aagcgaaact tcacactatc ttcggctggg gagtcctata acgcaaaact ggggccagcc      4620
     catactcttt gcactgtagt ttctcgtcga ggaacaagct cctacgagct tctcgatgaa      4680
     aacggtaaaa acgtagggat attttcttcc gctgatctca agcctggagt tcctcaagac      4740
     ttctccgctt aaccttcctg ttgtagagta cagagaatac tgaaaaaagg ttggctgttg      4800
     cccagcctca atattacgtc gttcacgttc tttatagtag taattgtatc gttgtgttga      4860
     ctcgtaagat tcgtagagca aataatgtta gagtgagaaa attggtttga tggtcccata      4920
     atgtctcgct gtgttgatag tgtttgtcta atgttaacga gtgatttttg ttgtaaataa      4980
     taggttacaa tcgaattaag tagttgcgat agagaagttc aaccgattaa ggaaaagaga      5040
     cttaaaatgc atagtttctt attcgcgagg cggtaaagcg ttggtacccg ctcactgccc      5100
     taccataatt gattagtttc tactaagatt aactcagaat tcactttgaa cccacccgat      5160
     tgattatagt ttttcaattt actcagtcct agataattca gcgagaaata gcattcaaaa      5220
     ccggacaatc aagattaact tattttgatt gaaaataatt agtctaattc ttcttcgaaa      5280
     cagttaacgg tttcggacat tgggagagtt taagactaca taaacaagtc gcggaagtaa      5340
     ttgcgtaaac aagtgccctc aatcatgcgt gagggatcta tttgttggaa gaacgcaatc      5400
     tatgttgatt tttatctgaa aacgaaagca caaaatgtgc ggctcaaccc tggaatggtt      5460
     cacaatgaat tgaacaatta aataaaaaaa ataatacaaa acctagtgat cggacattgg      5520
     gcaggacact atttcctacg ttgtgattaa gtgatgttaa aataaaaaca accgattttc      5580
     tgatcgtcca gccatggcgg agactcaata gctactgttt attcatatat atctacattg      5640
     tggtataggt acaatataag tagggtaatt acacatattg acgtgatgtt caaacaccta      5700
     gttttgatta atttttaggg gggagtagaa ggtag                                 5735
//
ID   Gypsy-189_AA-LTR repbase;    DNA;    INV; 1052 BP.
XX
AC   supercont1.90;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-189_AA_;
KW   Gypsy-189_AA-I; Gypsy-189_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1052
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.90; Positions  167460  168511.
XX
SQ   Sequence 1052 BP; 336 A; 262 C; 201 G; 253 T; 0 other;
     tgttaccgct gtgatataaa attctttatt tgcctaggct aaaattaccc tttatatgtt        60
     tattagcgta ttgttaaatt aatacataaa ctatactcaa atatccctaa tgttaaaaat       120
     tcatcatata aaattgttaa actagttcaa aaagcatgca cactcaaaaa tgttatatat       180
     tactaagtta ggtaacacaa tttgttaaaa cacatctaaa caacatccaa cccctcgtac       240
     gcactgctga atagcaaaag gtgatgccac atgcgagaaa aaggaccaag caaggaaaaa       300
     aagggaatat gcgaaaagga aaggcaacta gggtcagaga cagctatcga tttgttctat       360
     tccatttcac atctcagcca agacggtcta ttgtaacgaa agtggtggaa atataaatat       420
     agtgagactc gaagttaatt gtctccgaca gacacaggag tctattgccg gatatattcg       480
     gatcaggacc caaaggattc tgggaaagta accttgagac cttcctaagc catacggtac       540
     ccagaaagcg atcagtatcc cgaaacgcag ccccggattc ccatcgacct tgaccacacg       600
     gtccaagagt gctggcgagt tcagacccgg aagaggccta gcatatccgt tgggaagcct       660
     gcaatcgcca gatagagacc ccagatagag cccttccatg tgttcggacc tccgcttcaa       720
     aggcctatca caagcgctcc gaataccagg aacgaagcgt cccgttaatc agcgaagccc       780
     tagaagtttg tcgccaaccc acgtggtata ccttcaccag cagacccaat ccgccttgcg       840
     tagccggccg gcccttccct cctccttata cacccacaca gctgtaagtc ccccaataaa       900
     tcgtttaaat gttaaatagt ggttttatag tttttccact tgaaggacag aacccttgaa       960
     agccatttaa gccgacccta ggatatttaa gacccatgct ctagctcgcc cacattccga      1020
     gattcaacgg gtcgatctga ccccaaataa ca                                    1052
//
ID   Gypsy-18B_PBa-I repbase;    DNA;    INV; 10805 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18B_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-10805
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 705-705 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus. The 5'-end 1.9-kb
CC   is different from that of Gypsy-18_PBa-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           1734..6743
FT                 /product="Gypsy-18B_PBa-I_1p"
FT                 /translation="MLDTGSGPNIIKENLIPEDEKINYTNILKLNGINNYP
FT                 VYTLGEITLILFNKPVTFHIVADDFPIPQSGILGNDFFKQTSSKIDYAQGC
FT                 IDVSGIQVPFLSPEIIVASPRSESLFYVRVGNPNVKIGYVPKLKITHGIYL
FT                 GDTIVENVSGKAYLNIINTRDEEVEVRVPTINLRPLNEMVDLCETRIKTLD
FT                 YQEELTNSHPNSFSRETKHIDPKEELLNENQNKNVISREEDEIMNINDIEI
FT                 VNENKNGNKNKNESENAKTKEDGIINNKHKEIKTSINGDKINKNLKVENKN
FT                 EIKMRGSKKKNPNFDTQREGSYQTSSEISSHPKILGEGSYQTSSENLKNSE
FT                 FLGDENCRITSRDNSGIADGSFRTPRAFSSSIGYEEGSYQTSLRNPTRSCL
FT                 EENDNTNSSVSLKGVKFPRVGMISEKTNGKNEPSHITAKELMERIQINKSN
FT                 EINLGKLGMKNKKPSSRIFKLRQNQSQEILDECIRKRKSKHKEKVVQGXQS
FT                 SSKGNXATECLILSGENQRDRLTKIIELLRLEHLNNYEEENVINLIINSQD
FT                 RFHIPEEKLTATNVLRHKISTTDDQPINTRQYRFPQIHKEEINKQVGELLE
FT                 GGIVKPSQSPYNTPIWIVPKKEDSQGNKRWRMVLDFRALNDKTIGDAYPLP
FT                 NIVDILDQLGGARYFSVCDLASGFHQIKMDPADSHKTAFTTPFGHYEFDRM
FT                 PFGLKNAPATFQRLMDLVLSGLQGKELFVYMDDIVIYASSLEEHERKYNLL
FT                 IDKLREANLKLQPDKCEFLKSEVTYLGHVIGKNGVKPDPKKLEAVRRFPRP
FT                 KTPKNIKQFLGLAGYYRRFISNFSKLAKPLTNLLKNDVRFEWTQEQEESFE
FT                 ILKQRLCEEPVLQYPDFSKPFILTTDASGVAVGGILSQGEINKDRPVAYAS
FT                 RTLTDNELKYDTYEKEALAILYCVKHFRPYLYGRKFTLVTDHKPLLWFKNA
FT                 QDTNMRILRWRLKLAEYDYDVVYKAGKTNVNADALSRNPVNFEEVNCKAII
FT                 DRRTLNPNEAKDAEIISKMLEESDEEEETEEDENFELYLSDDEQTENLLPD
FT                 DNLFRDNTDSIPFTQEELDELPVQQTEKALIHDPPRARRVLTRSQTINERN
FT                 KRLNSTQPQGRNEPKEIADQTNKSDKEKESDENTDDEGGSEITNEENEELS
FT                 SIDKLKPTIIDHKLMKNNVVDSRELLFLRKDNVAYFVDVDGNPLDSGARKL
FT                 LERNELPTLNELALCRPQVVKRKNYFHVALPIEEGSREGPTMILNYITQTL
FT                 MELRKITEELKLETISIAKTDFICNIPWSNIKTQIQTTFLDSLTKLIICNG
FT                 LVKYPPKDLRPSIIGETHCSPTGGHRGVTKTYNRIKHNYYWENMKSDVQRY
FT                 IQQCLQCQLKKLVRVKTKQPMIITDTPGTAFDKVAMDIVGPLQKTERGNEY
FT                 ILTLQDQLTKFSMGIPLPNQTSETIAEAFVNKFICIFGAPKAILTDQGRNF
FT                 VSDLMRKIAKLFRIRKFRTTAFHPQSNGSLERSHHALGEYLKQYANEQEQW
FT                 DRWVSLAMFNYNTCVHEATKHTPYELIFGKIARIPSEKFLAPEDKLTSYDD
FT                 YLVTLVTQLHNLRGNARENIINAKHKSKKYYDKKINPQIFKPGDYVFLLKG
FT                 PKPGKFGDQYTGPHEVLEILNKTNVKIRIKKNSRIVHPNRLRISHIKLPPD
FT                 K"
FT   CDS           join(6772..7956,7937..8719)
FT                 /product="Gypsy-18B_PBa-I_2p"
FT                 /translation="MDLHNCWAVIIAILTIRFHKTHGIIGYDCGSPSTNLT
FT                 TLSLLNIEECDIPPQNVNSTNVYIQLLQINEFESVKVIQCKVEIDRLIKKC
FT                 GMFSHSMDVLNGKYSYIEETSREVCQRMHSYGTYQLHNGYITGLKPNHTTA
FT                 RPVTLAGHVDADGSCKGSTYSDPYGTWTDVVVLASIKISLQEYIADVRINS
FT                 NRVLLRSGVACELTTTHCTDIEGGETYWDPVPADTCKFNNYGVLYSGIADK
FT                 IIDNVNEQQLVVYSLTAQDTTFALTSKGKYATCGYTLTRTEHPKLIIFETS
FT                 RGVTIFKQRTRVSNLDIFTYMNSKFVYVEKHIRTQINQLYRNILLQQCELE
FT                 QGMLKNALAIATQTPDIFAYYLMKGPGYMALLAGEVIHIVKCVPVGSKNHK
FT                 NEVKITRTDNCYNQLPVIRGNETYYLTPQTHVLLRQGTQINCNSFAPTMYH
FT                 LGDSWYKLMPKPVESLPPTIMKPMTKPTWKYVSPGSLATSGIYTENDLNDL
FT                 RDHILFPAERPAVLNTVARRMMGQPISLNGGSLSNLLDEASITKIAASAWK
FT                 KFWNKFLIFGNISAGVIGIYLTGRIIKLIVDTIVHGYALHTVYGWSIHLLG
FT                 AIWDSITHLLLLLGTKRFQKPEQASAPESDLYSKTPENQVYPLLPPEEKPG
FT                 FSFELKK"
XX
SQ   Sequence 10805 BP; 3939 A; 2083 C; 2083 G; 2697 T; 3 other;
     ttggacgtaa catatccaga gatagaaaaa ttgggggctc gtccgggatg aaaattgcga        60
     tctttacaaa cgggaatgag tacgacgaga tctaaatcgg acaaaacgga agtaactgaa       120
     caatataaat atgctataga atcgcagaac aaatcaaaat ctaatttaaa aggctcagct       180
     cctctcccta cctcaactcc cgtcgggact ttgaaaacca caccccgaca cgtgcatttt       240
     cctgacgaca gtataattac tgaagagaaa tacgaaactg ttttagaatc gccggaatct       300
     gattccgacg gtgtcgaaga cgtaacgcca agtaaatcgg aaattaacgg taaattagcc       360
     atgtcacaac aaaatccgtt cgttactttg aaatatgctg tcgaagccgt gccttacttc       420
     gacggctcta atataccgtt atcttatttt atcgaaggat gcgaggaggc aaagtccatg       480
     ctaccggagg aagccgaacc gcaattcgcg aaaataatta gaacgcgagt cgtaggcgaa       540
     gcgcgtcgta ctatacaaga tcaaaatttc aacaccgttt cacagttaac aaaatattta       600
     aaacagattt acgggcctac gaaaaatgtt tatcaactac agggggaatt aggctgtatt       660
     tatcagaaga gtgacgagga tgtagtaaca tatgctaatc gagtaaaact tttggggaaa       720
     caaatttttg aagcatataa aaatcaagga agtgctctct ccgatagaga tattcaatta       780
     tctttagaga aagacatgtg caaatgtttt attagagggt taaaacctga aattgagcaa       840
     agaataacta gaaatttaga catagcggga acggtatccg acgcgttaag aatagagaga       900
     gagagagctc cgagcaatga cagatttacg gcaagggtca ggcgcgaagt caggtcaaaa       960
     ctcattattt gagaaaagtt taagggagac ttgtcaaata tgttacaaag aagggcattc      1020
     cgcgattaat tgcagaaaat tatccttgat tcctcaacct acgtagttta ggaacggaaa      1080
     ttttgatttg tcaaatttgt aaaaagcgcg gacatggcgc ggataaatgt cgccttcgtg      1140
     atcctcagtc tcgtcgacct gtgaatgtat tacgagaaaa accgattttt ttgtcaatta      1200
     tgctcaaaag caggtcacta tgccaaggct tgcccgacgg acggcagggt aaatcctcaa      1260
     gttaataaaa ataccgttgt ttgtcagtgg tgcgatagat ccggacatac cgcgagtaat      1320
     tgttggaaga agcagaacga acaacgcggc ttagaaaata aaaatagaat tatttgccag      1380
     atgtgtaata atttcgggca tgttgcaaag aattgtcgag caaaattaac tcaatccaaa      1440
     gacaacatgt tttgccgtta ttgtaaagaa aagggacatt tccttgaaaa ttgtcaattg      1500
     agaattgcaa gtaataatcg taggaagaat accgatcagg aaaactccaa tggccccttg      1560
     agatcgggtg tgcaaagggg gcccgaacga gttacacacc cttcgaaaac tccagagtcc      1620
     aagtagacaa aaacgcaccg gagattcgac ccgtaactgt aaacttggat aaacatagtc      1680
     gcgtgcctac tgtgcaggta gagatccgta atataacaga tgacgtaact ctaatgctag      1740
     acaccggttc gggaccaaac ataattaaag aaaatctcat acccgaagac gaaaaaatca      1800
     attatacaaa tatcttaaag ttgaatggta taaataatta tcctgtttac actctcgggg      1860
     aaatcacttt aattcttttc aataaaccag taacctttca tattgtagcg gacgatttcc      1920
     cgattccgca atctggtata ttaggcaacg atttctttaa acaaacatca tcgaaaattg      1980
     attacgcaca aggatgtata gacgtatccg gaatccaagt accttttctc tcgccagaaa      2040
     ttatagtggc atcaccaaga tcggaatcgt tattttatgt aagagttggc aaccctaatg      2100
     ttaaaattgg atatgtaccg aaattgaaga taactcatgg aatctatcta ggggacacga      2160
     tcgtggaaaa cgtctcgggg aaagcatact taaatatcat aaacacacgg gacgaagaag      2220
     tagaagtcag ggtgccgacc ataaatctta gacctctgaa tgagatggtc gacctttgtg      2280
     aaaccagaat aaagacgtta gattatcagg aagaattaac aaattcacac ccgaattcct      2340
     tttcaaggga aaccaaacat attgatccta aagaagaatt gttaaacgaa aatcaaaata      2400
     aaaatgtaat aagtagagag gaagacgaga ttatgaatat aaatgacatt gagattgtta      2460
     atgaaaataa aaatggaaat aaaaataaga atgaaagtga gaatgcaaag acgaaagaag      2520
     acggaattat aaataacaaa cataaagaaa ttaaaacctc cataaatgga gataaaatta      2580
     ataaaaattt aaaggtcgaa aataaaaatg aaattaaaat gagaggaagt aaaaagaaaa      2640
     atcctaattt cgatactcag cgagagggaa gttaccaaac ctcctctgag atatcctccc      2700
     atcccaaaat cctcggagag ggaagttacc aaacctcgtc cgaaaattta aaaaattctg      2760
     agtttcttgg agatgaaaat tgtcgaatca cttcaagaga taattctgga attgccgatg      2820
     gaagtttccg cactcctcga gcattttcca gctccatcgg ttacgaggag ggaagttacc      2880
     aaacctcact acgtaatccg acacgatcct gtctggagga aaacgacaat actaattcct      2940
     cagtctcgtt aaaaggtgtt aaattcccga gagttgggat gatctcggaa aaaacgaatg      3000
     gaaaaaatga accctctcat attaccgcca aagagcttat ggaaaggata caaataaata      3060
     aatcgaatga aataaatctt ggcaaattag gaatgaaaaa caaaaaaccg tcttcgagaa      3120
     tttttaaatt aagacaaaat caatctcaag agatattaga cgaatgtata cgcaagcgca      3180
     aatcaaagca taaggagaaa gttgtacaag ggwtacagag tagtagcaaa ggaaacgkag      3240
     cwaccgaatg cttaatacta tcgggagaaa accaaaggga tagactcaca aaaatcatag      3300
     aattattgcg actagaacac ttgaataatt atgaagagga gaatgtgata aatcttataa      3360
     ttaatagtca agacaggttt catatacctg aggaaaaact gacggcaact aatgttctac      3420
     gacataaaat atcaacaaca gatgaccagc cgataaacac ccgtcagtat agatttccgc      3480
     aaattcataa agaggaaata aacaagcaag taggagagct gctagaaggg ggcatagtaa      3540
     aaccttcaca gtcgccttac aatacgccca tatggattgt acccaagaaa gaggattctc      3600
     aaggaaataa acgatggaga atggtattag atttccgggc attaaatgac aaaactatcg      3660
     gagatgcgta tccactacca aatatagttg atatcttaga tcaattggga ggagctcgat      3720
     atttttcggt atgcgatcta gcctcaggat ttcatcaaat aaaaatggat ccagcagata      3780
     gccataaaac cgcttttaca acaccttttg ggcattatga atttgataga atgccatttg      3840
     gattgaaaaa tgctcccgct actttccaac gattaatgga tttagtttta tcaggattac      3900
     aaggaaagga actatttgtt tatatggacg atatagttat ttacgcgtcg tcattagaag      3960
     agcatgagag aaaatataat cttttaatag ataaattacg cgaagcaaat ttaaaattac      4020
     agcccgacaa atgtgaattt ttaaaatcag aagtaactta tttgggacac gttataggca      4080
     aaaacggagt taaacccgac ccaaaaaaat tagaggctgt acgacgattt cctagaccca      4140
     agacacctaa aaacattaaa caatttctag gactagcggg atattacaga cgatttatct      4200
     ctaatttttc taaattagca aaacccttga caaatttatt aaaaaatgac gtacgtttcg      4260
     agtggacaca agaacaagaa gaatcatttg aaatattaaa acaaagatta tgtgaagaac      4320
     ccgtgttgca atatcctgat ttttcaaagc cttttatcct aaccaccgac gcttccggag      4380
     tagccgtagg aggaatattg tcgcagggtg aaataaataa ggaccgacca gtcgcgtatg      4440
     cgtcgcgaac tctaactgat aatgaattaa aatacgatac atacgaaaag gaagcgctgg      4500
     ctatattata ttgtgttaaa catttccgcc catatttata cggccgaaaa tttactttag      4560
     tcacagatca taaacctcta ttatggttta aaaacgctca agataccaac atgagaatat      4620
     tacgatggag attaaaatta gccgaatacg attacgatgt cgtatacaaa gcaggaaaaa      4680
     ctaacgtaaa tgccgatgcg ttatccagga atccggtgaa ttttgaagaa gtgaactgca      4740
     aggcaattat tgaccggaga actttaaatc ccaacgaagc aaaggatgca gaaataattt      4800
     ctaaaatgtt agaagaatcc gacgaggagg aagaaacaga agaggacgaa aacttcgagt      4860
     tatatctttc agatgacgag caaacagaaa atttactacc tgacgacaat ctgtttaggg      4920
     ataatacgga ttcaataccc tttacacaag aagaactgga cgaattacca gtgcagcaga      4980
     cagagaaagc attaatacac gatccaccga gagccagaag agtgctcact cgcagccaaa      5040
     cgataaacga aagaaataaa cgcttaaatt caacgcaacc tcaaggaaga aatgaaccca      5100
     aagaaattgc ggatcaaacc aacaaaagcg acaaggaaaa agagagtgac gaaaacactg      5160
     acgatgaagg aggaagcgaa ataacaaatg aagaaaatga agagcttagt agtatagata      5220
     aacttaaacc aactatcatt gaccataagc taatgaaaaa caatgttgtc gattcccgcg      5280
     aattattatt tttgcggaaa gataacgtag catattttgt cgatgtcgat ggaaatccat      5340
     tggattctgg agcacgaaaa ttactcgagc gcaacgaatt gcctaccctc aatgaactcg      5400
     ctctgtgtag accgcaggtt gtaaaacgca aaaactattt tcacgtggcc ttacccattg      5460
     aggaagggtc gagagaaggg ccaacaatga ttttaaatta tataacgcaa actctgatgg      5520
     aattacgaaa aataacagag gaattaaaat tagaaactat tagcattgct aaaacggatt      5580
     ttatttgcaa cattccgtgg agcaatatta agacacaaat acaaacgacc tttctcgact      5640
     cattaactaa actaattatt tgtaacggat tagtaaaata tcctccgaaa gatcttcgcc      5700
     cttctataat aggcgaaaca cattgctcac ctacaggtgg acatagaggc gttactaaaa      5760
     cgtataacag aattaagcat aattactatt gggaaaatat gaaatctgac gtccaacggt      5820
     atattcagca atgcttgcaa tgtcaattga aaaagttagt acgcgttaaa acgaaacaac      5880
     ccatgataat taccgatact ccgggaacag ccttcgacaa agtagcaatg gatattgtcg      5940
     ggcctctaca aaaaactgag agaggaaacg aatacatttt aacactgcaa gatcaattga      6000
     ctaaattcag catgggaatt cccctaccaa atcaaacctc cgaaacaata gccgaggctt      6060
     ttgttaataa attcatttgt atattcggag cacccaaagc aatactaacc gatcagggaa      6120
     gaaattttgt cagcgattta atgagaaaga ttgcaaaact ttttagaatc cgtaagtttc      6180
     gtacaaccgc cttccatcct caatccaatg gatctctaga gcgatcgcat cacgcactag      6240
     gagagtatct taaacaatat gcaaacgaac aagaacaatg ggaccgatgg gttagcctcg      6300
     caatgtttaa ttataacacc tgcgtacacg aagctacaaa acatactcca tacgaattaa      6360
     tatttggaaa aattgcaaga ataccttcgg aaaaatttct agcaccagaa gataaattaa      6420
     ctagctatga tgactatttg gtaaccttag tcactcaact ccataacctt cgagggaacg      6480
     cgcgtgaaaa tatcatcaat gcgaaacata aatcaaagaa atattatgac aaaaaaatca      6540
     accctcaaat ctttaaacct ggggattacg tatttctatt aaagggacct aaaccgggta      6600
     aatttgggga tcagtatacc ggaccacacg aagtactaga aatattaaat aaaactaacg      6660
     taaaaattag aataaagaaa aatagtcgaa tcgtccatcc taaccgttta cgaatttcgc      6720
     atattaagtt acctccagac aaataataaa aaaaaacata accattttca gatggatctc      6780
     cataattgct gggcagtaat aatagcaatt ttaacaatcc ggtttcataa aacgcatggg      6840
     ataataggct atgactgcgg ctcgccctca acaaatctaa caaccttatc cctactaaat      6900
     atcgaagaat gcgacatccc gccacagaac gtaaattcaa ctaatgtcta tatacaactt      6960
     ctacaaataa acgaattcga gtcagtaaag gttattcaat gcaaggtcga aatagacaga      7020
     ttaataaaaa aatgcggaat gttttcccac tccatggatg ttttaaatgg caaatattca      7080
     tatatagagg aaacatcgcg cgaagtatgc caacgaatgc attcttatgg aacttatcag      7140
     ttacataacg gatatatcac cggattaaaa ccgaatcata ccactgcccg accagtaaca      7200
     ttggcaggac acgtagacgc cgatggatcg tgcaagggga gcacgtattc agatccgtac      7260
     ggcacgtgga ctgacgtcgt ggtactcgcc agcataaaaa tctcactaca agaatatata      7320
     gccgacgtac gaataaatag taatcgagtg ctactcagat ccggagtggc ctgtgaactc      7380
     acaaccactc attgcacaga tatagaggga ggtgaaacct actgggaccc agtgcccgcc      7440
     gacacttgta aattcaacaa ttatggagta ttgtacagtg ggattgcaga caaaataata      7500
     gataacgtaa atgaacaaca actagtagtc tattcattaa ctgcacaaga tacaactttc      7560
     gccttgacta gcaaaggaaa atacgcaaca tgcggctata cactcactcg aaccgaacat      7620
     cccaaattaa tcatcttcga aacctcgcgt ggcgtaacga tcttcaaaca acgaacgcgt      7680
     gtctctaacc tcgacatatt cacctacatg aattccaaat tcgtatacgt cgaaaagcac      7740
     atccgtacgc agataaatca attatacaga aatatccttt tgcaacaatg tgaactagag      7800
     cagggaatgt taaaaaacgc cttagctata gctactcaaa cacccgatat ctttgcttat      7860
     tatctaatga aaggacctgg atatatggcc ctgttagccg gagaagtaat acatatcgta      7920
     aaatgcgtac ccgtaggaag taaaaatcac aagaactgac aactgttaca atcagctacc      7980
     ggtcattcgg ggaaacgaaa cctattactt aacgccgcaa acccatgtac tattgcgaca      8040
     aggaactcag ataaattgca actctttcgc acctactatg tatcacctag gagactcatg      8100
     gtataaactc atgcctaaac ctgtggaatc attaccgccc acaattatga aacctatgac      8160
     caaacctacg tggaaatatg ttagccctgg atcgctcgct acaagcggaa tatacaccga      8220
     aaatgatctc aatgatctac gagaccacat attgttccct gctgagcgac cggcggtgct      8280
     caacacggta gccaggcgga tgatgggaca accaatctct ctgaacgggg ggtcactctc      8340
     aaatctatta gacgaagcat ccataacaaa aatcgctgca tccgcatgga aaaaattttg      8400
     gaataaattc ttaattttcg gcaatatcag tgccggggta attggaatat acctcaccgg      8460
     gagaatcata aaactaatag tagacacaat cgtacatggt tacgctttgc ataccgtata      8520
     tggatggtcc atacatctac tgggcgccat ctgggactct attacccatc ttttattact      8580
     gttggggaca aaaaggtttc aaaaacccga gcaggccagc gcaccagagt ctgacctgta      8640
     tagtaagacc cccgaaaacc aagtataccc tttattacca ccagaggaaa aaccaggatt      8700
     ttcgttcgaa ctaaaaaaat aataacaaca aaacaacctc ttttctttcc ttctcctatc      8760
     tactattccc cctcccaacc acctaacaat cattaaactt tttagaagtg aagaaagtaa      8820
     aaataaaaag gagaagagaa gaatggaagc catcgatacc agccgtttga ctcgtgggcg      8880
     tctcgagtgt aagattctac gaatggaatc tccgctcctg ttttgggtgc ggttaaaaaa      8940
     tggagaatca gctctgcaag atctatcgga agaacttaac ttccgaatga accgcaaatc      9000
     caaagaactc atttgctggc ccaacgacat agaggaagac aagcctgttg ccataaaaga      9060
     cggcgacgta tggcaaaggg gattgattac gggagtcaac ccggcccaga ggaccgcccg      9120
     gatcgatctc agggacatag gacgccaagt gtggagacca ttccatcaaa tcttccgctt      9180
     ggaagggcgt ttccaagaat tatgctggca ggctcttacc tgtggactag cctacacagg      9240
     accggctaaa ccaactagat tttggtccag gaaaactaga gccttgtgcc gaatcctaac      9300
     cgaaggacgc agcggatata ttaacatcgt gcgtccactg gaaaacgggg ccgcaatggt      9360
     caaattagtc ttgccgcacg aggacgactg ggggggtcac gaaccttcgt gacgcactgg      9420
     tatctctagg ggaggcacga gtcgagaaag aggcccgaat cgtggatacc ttcccagcga      9480
     tctaaaaaat gagtctatat actcagttac acaacctttg tttcgtttta ttataccatc      9540
     cttatttctg ttagttatat cttttttttt atctcgtata cttatttagt caataaagta      9600
     atgtttaagt tgaacaatca taaacattat aatttaataa taatttaatc ataataattt      9660
     tgataacaat tacttaagtt ccttttacac atatatcatc cacttccttt attattaaac      9720
     ttattatatt aatttttttc tttttgtggc ataaagaggg aggaaatgta accaagtcga      9780
     ttaattcttt attcatatcg atgttgcttg agtgcctact ggagagcggg agcgcttatt      9840
     atttttattt ttctctcctc atctgcaatc accaacaccc tgaactacag cataataata      9900
     ttaacaagtt agtggtagga taataatcct acacatctaa ttgcccagtc gaataaattg      9960
     tcatgcgaac gtcaccttac ctaatataac aaacatatca cataatcaga cgatacgcaa     10020
     tgactgaggc aggtaaagag cgctaaaacg cctaatggcc acggcttgac catttgcatt     10080
     aagaccccga aaaaaaaagg gggaagagga tagaaaaacc atcttgggat gcagaacatg     10140
     gaaatataat tccaaaccaa gcgagacgcg actggtggta ctcacgtaat atatacatgt     10200
     aaaaaaaagg ggggaggcaa gaatttgctg atcgtttgtt atacaaaatc attttcttcc     10260
     tcttgaacgc tatataatga atacgataga gttaagccaa aattatcata aatcctttcg     10320
     aaattcttat aattctttcg aatttatttg taatcgtaat aataatagta ataataataa     10380
     taataataat aataataata ataataataa taatactagt aataatactc ttctatcgaa     10440
     tccaagcata catcaagatt ttgcgcattc ttcactctct acaacaagga gaaataagtc     10500
     ctttcaaaat aaatacgcat taacaaatgt taggcatgaa acacttaaaa tatttttctt     10560
     taaaaaaaag agggggaggg gagagtgaat gatgcgcaca atttaatttt aaacagtatt     10620
     gagaatataa tgtaacgtta gttaatgtaa gcgaagacga ggaagaacga gggaataagg     10680
     aaggggtttt ggtggtcgcc tgttccttcc ttcttcttca caaaaaaaag ggaaccgaaa     10740
     gagaagaatt attatcctat tgttgcaaat gttgtgcacc cccaacattt gtctaagtcg     10800
     ggggg                                                                 10805
//
ID   Gypsy-18B_PBa-LTR repbase;    DNA;    INV; 1830 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18B_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1830
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 706-706 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1830 BP; 460 A; 486 C; 319 G; 564 T; 1 other;
     tgttacgtcc ggcggacttc acgattcttc tctcttttcg gagcgaacgg gcgagctccg        60
     atacagcata aaaaaaatca ttctgaatgt aaactaagat aatttttacg agctctagct       120
     ccgtggacgc cagtctgccg aacacgtgaa cctcagactg ttgagggctc gcttttcgaa       180
     ctaacaaata aactataaaa cccgattgaa ttgcaactaa gctaaaataa cacttgacag       240
     ccatatgccg aacgcaaaga aacccttagt gcactggcga cgacggaaaa tcataaatcg       300
     tcaagtaggt atctgttttc cctcatggca ggctgcgtac tcgaatagcc gccttcgtgg       360
     cgtcggttat ttaatccgcc gaccacccat tcggccacaa atatttagat aatgccatat       420
     gttgataaag gctcagaccc actacctaac tatcatccct aaaaattctc cccgtaccaa       480
     tcagactctt tttccaaaat tctgaactat gataggctaa ctccccccac atccctaatg       540
     actcgctaat tcctattcgt taaagacccg cgagatattc ttaatttccg aaccgaagcc       600
     ccgcgacagc tttttaccaa gatcctcccc ggaggaaacg cacttcgact tcgcacttgc       660
     tctttgaccg acagttttca cgcgctctga tccgttagtt tttttcacga gcaatcttaa       720
     atctttttcg gacattcgtg tacctgcgcg tccgttcgca ttcgctttta actctcggtt       780
     tagctttgtc gattctcgcc gaagtaatcg cagattcagt attaatatcc ttattcaagt       840
     tttaatatcg ggacgggtga attaaaataa acttgtaatt tctttcaatt gtcatttatt       900
     atccgaacgg gagtgttttt ttttgtgcgc cccttgtttc ttctacttcc ctgcggaacc       960
     ccaggagcac cctgcagaga accactggcc gctggtcccg acccccgctt gtctctagcc      1020
     gatctacctg caacgacatt tctttgtaat catcgcagta gtaagtcgca tggattaata      1080
     tgaatctacc catcaccact taaatatcga ttgtttcccc ttgctcccct cccccttact      1140
     tacctttctg agcctaccgt gcttaaggtt taacactttt acacttacat aattgtttgt      1200
     ttaaawtatt ctattatttt tttgttcatt tatttatatt gtaaaaaccg ggcatggccc      1260
     taaatatttt aacgtagagt cttaccccga actgccatgc ccgacgacct ccgcactttt      1320
     gtaacacccg cgtgctacac ttacatgcaa ttttattcca ctctcatgcg cccattcgaa      1380
     aggatattaa ccgttatcat tatctaccga gtaatcacta tgcgtaccat ttctccttta      1440
     tgttaagtat tttgtgtttt aattttgtac tttgttcgtt tcactttaat taattaaatg      1500
     attactttaa cgataaatca atttattcat taataattta accctctcgt cacgctcgtt      1560
     cccgcccgct ctcggggatc gcatatggtc ctatcccagg caaaagagat taaattctct      1620
     tgcctaaatt aacggaccga cggacgtacg tcacgcagtc ggagtcatag cgtctttttc      1680
     aagacgttga cccgtatcgg ctgacctgta cggtgcgttc gactcgcagg cacgctccag      1740
     agcggccacc tgcgagagga tattcggtgc gtccttcctt gccccatccc ttcaaccttt      1800
     aactaataat tccggggtct ggacgtaaca                                       1830
//
ID   Gypsy-18_AA-I repbase;    DNA;    INV; 4385 BP.
XX
AC   supercont1.213;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_AA_;
KW   Gypsy-18_AA-LTR; Gypsy-18_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4385
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.213; Positions 1460912 1456528.
XX
CC   Positions [3367-3828] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..2946
FT                 /product="Gypsy-18_AA-I_1p"
FT                 /translation="MTEPTPELMEALSGMIAQALKASLGSVVQQQVAALNA
FT                 NGDPAAPAALAPKVPSFSMSEYRSTEESSVSDYFNRFEWAAQLSHIPADQY
FT                 ANYARVHMGAELNNALKFLVSPNDPAATTYQDLRTTLIDHFDRAKNKFVES
FT                 IKFRHIVQEKDESVAKFVLRLKQGAAHCEYVAFLDRMLIEQFLHGLEARDM
FT                 CDVIIAKDPATFKAAYEIAHALEATRNTAREVNTGAPSPNPEAANKLGYET
FT                 PRTKKVNRQSPSSHPKQHRYLTESPFEEQRNGSQQDRGSGPCNGCGGHHMR
FT                 SDCRFRDARCNKCNKKGHIAKVCRSTRSSAQSFSTDQVESSEDPACEIDVV
FT                 QTLGQLCDSTAIGKKLIDVIMEGQHLQMELDTGAPCGIISESKLRAIKPNF
FT                 SLLPSDRQFASYSGHRINCLGRLPVKVSVGSASRRLNVYVVSGDSDPLFGR
FT                 EWIAQFVDQINLNRMFTPSASVNAVTTTELISSQELKLAELLENYKDIFSD
FT                 VPGKLIGPPAKVHLKPGASPIFAKARDVPLALCDRYAAEIEKKITAGFYEK
FT                 VDYSEWASPTHIVVKTNGSIRITGNYKPTVNPRMIIDEHPIPKVEAIFNKL
FT                 KGASFFFFLDLTDAYTHLPIDEEFRHVLTLNTVTHGLIRPTRAVYGATNIP
FT                 PIWQRRMENVLQGLDNVVNFYDDIIVAAANFEQLMLSLTAVMDRMKQYGLR
FT                 LNRSKCIFAVPSLECLGHRIDRNGLHKSDKHIEAIRDAPRPETPEDLQLFL
FT                 GKSTYYSAFIPNLSTRARSLRDMLTADTFVWTPEANMAYQDLKKALISPQV
FT                 LMQYTPDLPLLLATDANKTGLGAVLSHRLENGTERPIAYASCTMSKTEQQY
FT                 PQIDKEALAIVWAVNKFFALSVCSKIYFDHRPQTTHADIAPRKIPPYAMYQ
FT                 SNGELCRLLGPFQLRRRIPANQIEHQCRLLLTNSQQVNSFRRKQPI"
FT   CDS           3235..4353
FT                 /product="Gypsy-18_AA-I_2p"
FT                 /translation="MKGLARSYVYWPGIDTDIERTAKSCMECARYAPAPPK
FT                 FSSHHWEFPRAPWERIHIDYAGPFAGSMLLIIVDAFSKWVEVKTTTSTTTS
FT                 ATIQILDGLFSTFGAPITVVSDNGQQFTAAEFKDFLQSSGVKYHKLSAPYH
FT                 PATNGQAERYVQTVKNGLKAMGTTSGDLQSNLNTFLQQYRRIPHSETGDSP
FT                 AKLFLGRNIRTRLDLVRPQTTNTAITEKQQAAFEPSFRSFSPGQRVHVLSG
FT                 NTKMDKWISGTVSARLGDLHYEVVHQGKHLKRHVDQMRRFEDGSLLAHTPS
FT                 NEALLTTIPGVVRRAFSYGDTVTSQQAPINSESGASAERTPAAADEQFSTR
FT                 NASPVGEREVSSPVLRRTTRLRRAPLRYSP"
XX
SQ   Sequence 4385 BP; 1205 A; 1130 C; 1049 G; 1001 T; 0 other;
     ataattggtg tcagaagtgg gattgtggga gaaaatatcc ggcatcccaa aagtgaggtt        60
     aaaactacgg aaaccacatt cttccgagca ccgaaaatga ctgaaccgac tccagagctc       120
     atggaggcac tgtccggaat gatcgctcag gctctgaaag catctctcgg aagtgtcgtc       180
     caacaacaag tagccgcctt gaacgcgaat ggagaccctg ctgctccagc tgctctagct       240
     ccaaaagtac cctcgttttc gatgtccgaa taccgctcca cggaagaatc atctgtctcc       300
     gactacttca atcggttcga gtgggcggca caactgagtc acattccggc agatcagtat       360
     gccaactacg cccgagtgca catgggggcg gaactcaata atgcattgaa gtttctggtg       420
     agccccaacg atcctgcagc gaccacctac caagatttgc gcacaacact catcgatcat       480
     ttcgatcgtg ccaagaataa gtttgtggag agtatcaagt ttcggcacat cgtgcaggaa       540
     aaggacgaat ccgtcgccaa gttcgttctc cgtctgaagc agggcgctgc acattgcgaa       600
     tacgtcgcct tcctcgatcg gatgctgatt gaacagtttt tgcacgggct ggaggcacga       660
     gatatgtgcg atgtgattat tgccaaggat ccagctacgt tcaaggcagc gtacgaaatc       720
     gcgcacgcgc tggaagctac gcgtaacacg gcacgggaag tcaataccgg tgcaccgtct       780
     ccgaatcctg aagcagcgaa caagcttgga tacgaaactc cgagaaccaa gaaggtcaat       840
     cgccagtcgc cttcgtctca tcctaagcag catcgctatc tgacagaatc accattcgag       900
     gagcaacgga acggtagcca acaggacaga ggatcaggac cgtgcaacgg ctgtggtgga       960
     caccacatgc gaagtgattg tcgcttccgt gacgccaggt gcaataagtg caataagaag      1020
     ggtcacatag ccaaggtatg tcgttcaacg aggtcgtcag ctcaaagctt ttctaccgat      1080
     caagtcgaat catcagagga cccagcttgc gaaattgacg ttgtgcaaac actaggccag      1140
     ctctgcgact ctacagccat cgggaagaag ctgatcgacg tcattatgga aggtcaacat      1200
     ctgcaaatgg agctcgacac tggagctccg tgtggcataa tttccgaatc gaagttgaga      1260
     gcaatcaaac caaatttctc gttgctgcca tccgaccgac agtttgcaag ctactctggc      1320
     caccgtatca attgtcttgg acgtttacca gtgaaggtat ccgttgggtc ggcatcccgt      1380
     cggctaaacg tatacgttgt gtctggagat tccgaccctc tctttgggcg cgaatggatc      1440
     gctcaattcg ttgaccagat caacctcaac cgtatgttca ctccaagtgc atctgttaat      1500
     gcagtgacga ctactgagct tatttcaagt caagaattaa agctggcaga gctgctggaa      1560
     aactacaagg atatcttcag cgacgttccg gggaagctga taggaccacc agcaaaagtg      1620
     cacttgaaac caggtgcatc tccgattttc gctaaggctc gcgatgtacc acttgcttta      1680
     tgtgatcggt atgcagcgga aatcgagaag aaaataacgg caggtttcta cgaaaaggtg      1740
     gattactcag aatgggcttc gcccacccac atcgtggtga agacgaacgg gagtattcgt      1800
     ataactggca actataaacc taccgttaac ccaaggatga tcatcgacga gcacccaatt      1860
     ccgaaggtcg aagcaatttt caacaagctg aaaggagctt ctttcttttt tttcttggat      1920
     ctcaccgatg cctacacgca ccttccgatt gatgaagagt tccgtcatgt actcactcta      1980
     aatacggtaa ctcacggact gattcgacca acgcgagctg tgtatggtgc gacaaatatt      2040
     ccgcctatct ggcagcggcg catggagaat gtgctacaag gcctggacaa cgtcgtcaac      2100
     ttctacgatg acatcatcgt cgccgcagcc aacttcgaac aactgatgct atccctaaca      2160
     gcagtcatgg acagaatgaa gcaatatgga ttacggctca atcgatccaa atgcatcttc      2220
     gccgttccat ctttggaatg cttgggccat agaatcgata ggaacggcct ccacaagtcc      2280
     gacaaacaca tcgaagcaat acgagatgca ccacgaccgg aaacacctga ggatttgcaa      2340
     ttgttcttgg gtaagtctac atattacagt gcatttatcc cgaatctctc tactagagca      2400
     cgaagtttgc gtgatatgct gaccgcagat acgtttgttt ggactcccga ggcaaacatg      2460
     gcatatcaag atttgaaaaa ggcccttatt tccccacaag ttttgatgca gtacacccct      2520
     gatctaccgt tactcttggc aaccgatgcg aataagactg gacttggagc tgtactgtca      2580
     catcggctgg aaaatggaac cgagcggccg atagcgtatg ctagctgcac aatgtccaaa      2640
     accgaacagc aataccctca aatcgacaaa gaagcgctcg caatcgtgtg ggcggtaaac      2700
     aagtttttcg cattatctgt atgctcgaaa atttactttg atcaccgacc acaaaccact      2760
     cacgcagata ttgcacccag aaaaatccct ccctacgcta tgtatcagtc gaatggcgaa      2820
     ctatgccgac tacttggccc atttcaactt cgacgtcgta taccggccaa ccaaattgaa      2880
     caccaatgcc gattattgct cacgaattcc cagcaggtca actcattccg acgtaaacag      2940
     cctatctaac gggagaggaa gtgccaggga tgaattcgac cagtttgttt tacttcaaat      3000
     acaacaactt ccggtaagag cggatctcat tgcgcgcgag acacggaaag atccccacct      3060
     cggaaaaatt gtccaagcat tggagctggg gcaacatctt gcacaatcag gctacaaggc      3120
     accggaagcg aaatatacaa tggctgctaa ttgtttggtc ttcgaacatc gagtggtcat      3180
     accagctgtt cttcgtccgg cgatttgcac gtagctcact tcggcgtcgt taaaatgaaa      3240
     gggttggctc gctcatatgt ctattggccc ggaattgaca cagacatcga acgaacagca      3300
     aagtcgtgta tggaatgtgc gcgctatgca ccggctcctc ctaagtttag cagccaccac      3360
     tgggaattcc cgagagctcc atgggagcgc atccacattg attatgctgg tccctttgct      3420
     ggttctatgc tgctcataat cgtcgatgcg ttcagcaaat gggtcgaggt gaaaaccacc      3480
     acatccacga ctacatctgc tactatccag attctcgatg ggcttttctc cacgtttgga      3540
     gcacctatca cagtagtgtc tgataatggc cagcagttca cggcagctga attcaaggac      3600
     ttcctacaga gcagtggggt caaataccat aagctttctg caccctatca tccggccaca      3660
     aatggtcaag cggagcgcta tgtgcagacg gtgaaaaatg gcttgaaagc gatgggaacg      3720
     acgagtggag atctgcaaag caatctcaac acctttctgc aacagtatcg aagaattcct      3780
     cattcggaaa ctggagattc accggcaaag ctgttccttg gacgcaacat tcggacaagg      3840
     ctggatctcg tgcgtccaca aacaaccaac acagcaatca ccgaaaaaca gcaagcagcg      3900
     tttgagccat cgtttcgttc tttctctcca ggacagcggg ttcacgttct atcgggaaac      3960
     accaagatgg acaagtggat ttcaggaacc gtttcagctc gattgggaga tttgcactac      4020
     gaagttgttc atcaaggaaa acatctgaaa cgtcacgtcg accagatgag acgttttgag      4080
     gatggcagcc tgcttgcaca cacaccatca aacgaagcac tgttgactac gataccaggt      4140
     gtggttcggc gcgctttttc atatggggac actgtgacgt cacaacaggc gccaatcaac      4200
     tcagagtccg gtgcatcggc ggagcgaacc cctgctgcag ctgatgaaca attttcgaca      4260
     cgcaatgcca gtcctgtggg ggaacgagaa gtctcttccc ctgtattgcg ccgaacaacc      4320
     agactacgtc gtgcgcctct aagatactcc ccgtaatatc tgaatttctt agaaggggga      4380
     agaaa                                                                  4385
//
ID   Gypsy-18_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   supercont1.213;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_AA_;
KW   Gypsy-18_AA-I; Gypsy-18_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.213; Positions 1456527 1456303.
XX
SQ   Sequence 225 BP; 64 A; 44 C; 38 G; 79 T; 0 other;
     tgttatgtat tcattattat ctctaattga ttttgaaagt tacttttctc tcggtgtttt        60
     tgcattatgt cagttgaatt aaaagctaaa caaaaccgcg taccgcgttt gtaaagttgc       120
     gataataaaa cgtttttttc taaagtatcc cggttcaata tcgcgttctt cggatccgaa       180
     acgttccgga atggttcctt aaccggaatc acccacagaa acaca                       225
//
ID   Gypsy-18_AG-I repbase;    DNA;    INV; 3956 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_AG_;
KW   Gypsy-18_AG-LTR; Gypsy-18_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3956
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1440-1440 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [2993-3469] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1883..3955
FT                 /product="Gypsy-18_AG-I_1p"
FT                 /translation="MSKVEFLGVEVSKDGVKPGEAKCLAVKEFPTPCDSKE
FT                 VQRFLGLAGYFRRFVEKFSIIARPLHSLTKKGVDFQWGRQEEEAFQALKAK
FT                 LTERPLLALYDRNADIELHTDASKEGLAGILLSSSGVGWRPISFFSRKTTE
FT                 LESSYHSYDLEILAVVASIERFRQYLLGRPFVVKTDCSAVKDTYTKREMNP
FT                 RIARWFLKMQEYDFVIEHRGGNKMAHVDALSRGAVEQGREETTVAEKILAI
FT                 DIDTEDFLATMQQQDDKLAEILKTLQKPATTNAEKQIHDNYNIEGHRLMRK
FT                 VAGANKWVVPVRVRWRIVRAFHDEMGHFGTDRVLDSLREKFWFPKMRKYVQ
FT                 GYIEACPNCAYNKKKTGRPEGYMHPIPKEPIPFHTVHIDHLGPFVKSARGN
FT                 QYILAMVCGFSKFAILKAVSSTKTAPVIRFLEEVSAIFGTPSRMITDRGTA
FT                 FTSKTFEEYCEANNSQHIRVAVGSPRANGQVERYNRTILTALRCMVEEENR
FT                 RWDEKLSQIQWAVNNSRSATTKQSPSSLVLSYHPRDMHRNIIALVLHDEDD
FT                 NRIQNIEERKLKAVEEIDREQQRQKIGFDKRRGAPSRYNVGDMVLVERDIL
FT                 ATGESRKLETRYKGPYWVVAVLANDRYVIEDIPGAQRTQRPLQTTYAVDRL
FT                 KKWGRVQDLEFEGSIGQEKRQKEAYAEEKDDAEDSDECVVSE"
XX
SQ   Sequence 3956 BP; 1310 A; 740 C; 1128 G; 775 T; 3 other;
     agctgtagac aggataaacg aggcggcgtg attaaagtgc gtgaagcgta aagcattcca        60
     ggagtaaagt attgtactac aagtgttcgg tagaatgagt gataacgaaa gcgaagtttt       120
     tgcagcggcc acagagggac cgttcgtgac ggagcggaag aagccaggcc gcaatgagac       180
     agccgagttg agagcaatgg tggccgaatt acaactaaaa ctcgagcaag cggtgcaact       240
     taacagtggc ggaggatgga tagaagtgat aggccgtgcc gaggacgaaa cgaattgtgg       300
     ggacgagtgc cagatatcag ggagctgcgc gaggtcattc acccgtttga ccctagggat       360
     acgacctgcc ctgatgcagc agcatggctg aaaaacttcg acgagacgag tgaagtgtac       420
     gggtggaaag aggtagtgaa actacactgc gcacggctga gccttagcgg atgcgctaaa       480
     ctgtggtggg aagcaaacca gagcaaaatc aaaacgtggt ccaatttcga aggtgcgcta       540
     ctggccggat tcccatcatc taagaacgca gcattttacc acaactggct ggtgacaaga       600
     aaatggcgca aggaagagac acccaccgag tacgtgtacg ccatgttagc tatgggatgc       660
     aaaggcgggt ttaacgagga gactacgacg agttacattg tgaacgggtt aggcgagatg       720
     tggcggggtg caagggtagc agcgagtcgc gtaacaacga tcgaaggcct actcaaggaa       780
     atcgcctggg tggaaaacat taccgcagtg gctgagcata gcagacacgt cgaccgagta       840
     ggggagagga ggtgctttac ctgtggatcg gsggagcatg cggcgcgagc gtgcaacaag       900
     ggtcgagaac caggcatcgg tgaacggagt ggcgccgccg ggagcagccg cggggcgcct       960
     agatcgaatt ggcgttgttt cacctgtgac ggtatgggac acatctcgac ggattgtccc      1020
     cgacgtagaa ccgtagcacg gggagaaatg cgacgaacgg tggagccggc gagcggggga      1080
     cgcggaatac taaatgtgaa tacgttagat gatgaaggag agggcagatg tcaagcagag      1140
     gtaggcatgg ggaagattaa aatcagggca cttgtagact cgggagctaa cgtatctacc      1200
     attcgtacca aaattgcagg gctcgctgga acgccacggt ttgtgaaagg aacccttcat      1260
     ggatttgggg gagcgaaagt ggaggtgaac mcgaagagag aaacmcgaat acgactagat      1320
     gacatccaga aaatgcctta cgcacaagaa aacgtggtcc acgaaatcgt atagagctgc      1380
     tagagaacga cataatagaa ccctcggtat cggcatataa cagtccaatc gtgctagtta      1440
     agaaaaaaga tggcaagtgg cgtatggcat tgactatagg gcgctaaacc agaagacggt      1500
     aaaagatcga tacccaccac cggaaataga tagatgctta aatacgttag aaggcgcaaa      1560
     agtattcatc agcttagacc tgtattcggg ttattatcag gttcctgtag cagaatctag      1620
     cagggaaagg acggcgttct ctacgcctga tggacatttc cacttcaaaa gaatgccgtt      1680
     tggactgtaa atagtggagc agtgttccaa cggctataga taagatggtc aagggcttga      1740
     agcaaagaat gtagtagcgt atgtggacga catattaata ggagctaaga ccgagcaaga      1800
     ggcaatcaag gtactggaaa aattattaga ggcagttaaa gaacatggat ttacaattaa      1860
     cctgaaaaag agtaaatttt taatgtcaaa agtggagttt ctaggagtag aggtatcaaa      1920
     agacggggtt aaaccaggag aagctaaatg cctagcggtt aaggaatttc caacaccatg      1980
     tgatagcaag gaggtccaac gattcctagg cctggcgggc tacttcagga gatttgtaga      2040
     gaaatttagt atcattgcca gaccactaca cagtttaaca aaaaaaggtg tggatttcca      2100
     atgggggcgg caagaagagg aagcgtttca agcgttaaag gcgaagctta cagaaagacc      2160
     cttattagcg ttatatgaca ggaacgcaga cattgagtta catacagacg catcgaagga      2220
     aggtttagct gggatactgt tgagcagtag tggggtagga tggcgaccca tcagtttttt      2280
     cagtcggaaa acgacagagt tagagagcag ttaccacagc tacgatttgg aaatactagc      2340
     agtggtagcc agtatagaac gattccgaca atatctgcta ggccgtccat ttgtggtaaa      2400
     gacggattgt agcgcggtta aagataccta caccaaacgc gagatgaacc ctaggattgc      2460
     aagatggttc ttaaaaatgc aagaatatga ttttgttatc gagcatagag gtggtaacaa      2520
     aatggctcac gtagatgcac ttagcagagg agcagtagag caagggagag aagagaccac      2580
     agtcgcagaa aaaatattag ctatcgacat agataccgaa gacttcttag caaccatgca      2640
     gcaacaggat gataaactag cagaaatatt gaaaacatta caaaaacctg cgacaaccaa      2700
     tgctgaaaag cagattcacg acaactataa tatagaaggg catagattaa tgcggaaggt      2760
     agcaggagcg aataagtggg tcgtaccagt tagggtgcgg tggaggatag tgagagcatt      2820
     tcatgacgaa atgggtcatt ttggaaccga tcgggtgttg gatagtttac gggaaaagtt      2880
     ttggtttcct aagatgagaa agtacgtaca gggatacata gaagcgtgtc caaattgcgc      2940
     atacaataaa aaaaagactg gacggccaga aggttacatg cacccgatac ctaaggaacc      3000
     gataccattc catacggtac acatagacca tttagggcca tttgtaaaat cagcaagagg      3060
     gaatcagtac atattagcca tggtgtgcgg attctcaaag tttgcaatac tcaaagcagt      3120
     aagctcaacc aaaacagcac cggtaatacg attcttagaa gaggtgtcag caatattcgg      3180
     aacaccaagt agaatgatta cggaccgggg cacagcattt acatccaaaa cgtttgagga      3240
     gtattgtgaa gcaaataata gccaacacat tcgggtagca gtaggatccc cacgagcaaa      3300
     cgggcaggta gaacggtaca acagaactat actgacggct ctccgatgca tggtagaaga      3360
     agaaaatcga agatgggatg aaaaattatc gcaaatacaa tgggcggtaa ataatagcag      3420
     aagcgccact acaaaacaga gcccaagtag cttggtgcta tcgtaccacc ccagggatat      3480
     gcatcgtaat atcatagctt tagttctcca cgacgaggac gataatagaa tacaaaacat      3540
     agaagagaga aaacttaagg ccgtggagga gatagacaga gaacaacaaa ggcaaaaaat      3600
     aggtttcgac aaacggcgag gggcgcccag caggtacaat gtaggtgata tggtgttggt      3660
     agagagggat atattggcca cgggcgagag ccgtaaacta gagacacgat acaaaggacc      3720
     ctattgggta gtggcagtgc tagctaacga cagatatgtt atcgaggaca taccaggagc      3780
     acaaaggaca caacgaccat tgcagaccac gtatgcagtg gacagactga aaaaatgggg      3840
     aagagttcaa gatttagaat tcgagggaag tataggacag gaaaaacggc agaaagaagc      3900
     atacgcggaa gagaaagatg acgctgagga cagcgatgaa tgtgtggtgt ccgaac          3956
//
ID   Gypsy-18_AG-LTR repbase;    DNA;    INV; 156 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_AG_;
KW   Gypsy-18_AG-I; RETRO49_AG_LTR; Gypsy-18_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-156
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO49_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 11-11 (2002).
XX
RN   [2]
RP   1-156
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1442-1442 (2016).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 156 BP; 59 A; 24 C; 46 G; 26 T; 1 other;
     tgtaaactcg ccttaagtgc gaaacgataa gcgcaaacga taagatgcag gcagataagg        60
     atgagagcga tcattatcaa aagagagaga gataggcatt agatgagcga cagtgagtga       120
     ggacggacgt gkgcaagcga ataaagtacc gttaca                                 156
//
ID   Gypsy-18_AnFu-I repbase;    DNA;    INV; 4576 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4576
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2903-2903 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           638..4573
FT                 /product="Gypsy-18_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLRTPVKTMATNNDEEQTTQSIPLLDCYDEARVVTPP
FT                 MTPQPTARGSVVLPQTSREAIGSVKLPPFWTSSPNTWFIQAEAQFENAGTK
FT                 LDRTKYAHLLTAMSPEIIEKVIDIVQNPPAQNRYTFLKDALLQRLSISEEQ
FT                 RISKLLYNAEMGDSSPSDFHRRLMQLAGSTEFSDKLIFRLWLGRLPKAIEI
FT                 AIISMGNSNIAEILPIADKIWEASKGASVSACALKTNPSDISVLQTEISEL
FT                 KNLVRKMQVSRARTRSVPRKESRNRSASREKGKSLCWYHKKYGIEATKCVK
FT                 PCNFIAHKADKKQIKSTDVESVGEFPYSCRLFLHDEVSKLTFLIDSGADVS
FT                 VIPNSVFGVLTKSSDILVAANGTPIPTFGVKFMKVSLGLRRSFPHTFVLAA
FT                 VNHPIIGADFLKRYGLLVDLRNKRLVDPLTSLSTKASIAKVDTPSPKLFSV
FT                 NNVYTDLLKEFSSLMDPPDFNKPIGHSVVHHIHTNGQLPSSKPRRLDPVRH
FT                 KAAHAEFQHMLELGICRPSSSQVSSPLHMVAKTDNDWRPCGDYRQLNAVTI
FT                 PDRYPIPHIQNFAMNLHNCSIFSKLDIIKAYHLIPVASEDIYKTAITTPFG
FT                 LFEFLRMPFGLRNAGPTFQRFVNTIFQDLDYVFVYIDDILIGSTSQEEHIM
FT                 HVREVLKRLAENDVKLKHSKCVFGVPQLEFLGHHIDGKGITPTKDKVDAIN
FT                 NFPQPKSLKQLQRFVGMVNYYHRFIPHIAEIMKPLHKHIAVHSKLRSNSWD
FT                 WSPECETAFQKLKASIAQATLLSYPNNNSNYNITTDASNIAVGAVLQQDNN
FT                 GTWEPLAFFSKQLTDAEQKYSTFDKELLAIYLAIKHFRYFIEGREFFILTD
FT                 HKPLTTAIHSKADKTPRQSRHLDFISQFTSDIRYIKGDSNVVADTLSRIGE
FT                 NSEISLLDYNTLIMSQNTDPELENVLKYQSKNSKYKLDRLQVNNQGIYFET
FT                 STGVNRPYIPEPHRFSLFKEQHNISHPGIRATRKLIASKYFWPNMNKNINE
FT                 WTKACNNCQKAKVYRHTRTPLSRFDLPSGRFDHIHIDIVGPLPLSDNMAYI
FT                 LTVIDRYTRWPEAFPIADITAETVAKTLVQNYVSRFGCPVNISSDRGRQFQ
FT                 SKLFAELTKLLGSHHITTTAYHPQSNGLVERFHRQLKGSLMANDTSERWTE
FT                 KLPLVLLGIRITHKEDLKCTPAELVYGQNLRLPADFLAPSLTPTPDTMDYV
FT                 TRLKNVFSKISPTSPRQSNTKVYVDKTIETCKKVYIRVDRVRAGLEPPYEG
FT                 PYDVVKKLRKYFVIDKNGKHESVSIDRLKPAYYLENVRKNVHFTLREIEGE
FT                 "
XX
SQ   Sequence 4576 BP; 1407 A; 1029 C; 913 G; 1227 T; 0 other;
     ttggtgaccc cgacgtgata cgcccctttt ggaggatccg cctccctgga cgaaactcga        60
     tccagcgagc aacagttaac aagaaaccaa agacggacaa tagaaatagt tcttattaga       120
     actcacgtta ccttctacaa gctcttttaa gagctacaga attccttatt ggaattatct       180
     taattgtccg ttctacggtt ggttttcatc atcctctgga gccagacgat tcaacggagc       240
     cctacaacag tcctgattac catcactcgc ttgcccgcct tctcagtccg cggctaagta       300
     aaaacacgta aatacatgta aaaatacgtg aatacatgta aatacacgta aatccgcgta       360
     aagtcctcgc taccgcgtga aaagtttcgt tgtacagtga agtgtcgtgt taagtgtgga       420
     catttttacg agtgttgtgc aaagttattc gcatagtgtt tttcgataaa acgcgcgtgt       480
     tgtgtgaaga actatctcgc catcccaagg cgcatcacca cactctcaag atcggcattt       540
     tctcctcgtg ttgtccatca cacacagaga agtcgacgcg cagtccgcgc cgccgatact       600
     acaccgtcgt cgaatattcg ggatttaagt tctttcgatg ctaagaaccc cggtcaaaac       660
     catggcgacg aacaacgacg aagagcaaac cacgcaaagc atcccgctac tcgattgtta       720
     cgatgaggca cgagtcgtca cgccaccgat gacgcctcaa ccaacggcta gaggatccgt       780
     cgtacttcct cagactagcc gcgaagcgat cgggtccgtc aagttaccgc ccttttggac       840
     cagctcgcca aatacctggt tcatacaggc ggaggcccaa ttcgagaacg ccggtacgaa       900
     attggatcgt acaaaatatg ctcatctgct gactgcgatg tcgccggaaa tcatcgagaa       960
     agtgatcgac atcgtccaaa atcctccagc gcagaatcgt tacaccttcc tgaaggacgc      1020
     cttgctacaa cgcctgtcta tcagcgaaga gcaacggatc tccaagctgc tgtacaatgc      1080
     cgagatggga gacagcagcc cttcagattt tcatcgacgg ttgatgcagc tggccggttc      1140
     aacggaattc tcagataagt tgatttttcg tttatggtta gggcgtttac cgaaagctat      1200
     cgagattgcg attatttcta tgggtaacag taacatagcg gaaatattgc ccattgccga      1260
     taaaatttgg gaagcgtcaa agggcgcatc ggtgagcgcg tgtgccttaa aaactaatcc      1320
     aagtgatatt tcagtccttc agactgaaat atcggagcta aaaaatctag taagaaaaat      1380
     gcaagtctca cgagctcgaa ctcgatcagt tccgcgaaaa gagagtcgca atcgtagtgc      1440
     ctcgcgagag aaaggaaaat ctttgtgttg gtatcataag aaatatggca tcgaggcgac      1500
     caaatgcgtt aagccttgca attttatagc ccataaggct gacaaaaaac aaataaagtc      1560
     cacagatgtc gaatctgttg gtgaattccc atattcatgc cgccttttcc ttcatgacga      1620
     ggtttcgaaa ttaactttct taatagatag tggtgcggat gtgtctgtaa ttcccaattc      1680
     cgtttttggt gttttgacta aatccagtga catcctggtt gctgcaaatg gaactcctat      1740
     tccaaccttt ggagtaaagt tcatgaaggt atcacttggt ttacggcgat cttttcctca      1800
     tacttttgtg cttgccgcag taaaccatcc gatcattggg gcagatttcc tcaaacgata      1860
     tggtctattg gttgatctgc gtaacaaacg gttggtggat ccactcacca gtctgtccac      1920
     aaaagcaagt atagccaagg tcgatactcc gtcgcccaaa ttattttctg ttaataatgt      1980
     atacacggat ttgttgaaag agttttcatc attgatggat cccccggatt tcaacaagcc      2040
     gattgggcat agcgttgttc atcacattca taccaatgga caactaccta gttcaaaacc      2100
     cagaagattg gacccagtta ggcataaggc tgcccacgct gaattccaac atatgctgga      2160
     attgggcatc tgccggcctt cttcgtcgca agtgtcatcg cctctacata tggtggctaa      2220
     aactgacaat gattggaggc catgtgggga ctatcgtcag ttgaatgcag ttactattcc      2280
     tgaccgatac ccaatcccac atatccaaaa ttttgcgatg aatcttcata actgttcaat      2340
     tttttccaaa ctagacataa tcaaagcata tcatctaatt cccgtagctt cggaagatat      2400
     atataaaacc gcaataacca caccttttgg actctttgaa tttctaagaa tgcctttcgg      2460
     tcttagaaat gctggaccaa cctttcagcg ttttgtaaac acaattttcc aagatttaga      2520
     ctatgttttc gtctacatcg atgacatctt gatcgggagc acttctcaag aagaacacat      2580
     catgcatgtg agagaggtcc tgaaaagatt ggcggaaaac gatgtaaaac tcaaacattc      2640
     taagtgtgtg tttggagtac cccagctcga atttttaggg catcatattg acggcaaggg      2700
     tattacccca actaaggata aagttgatgc aatcaataat tttcctcaac ccaaatcctt      2760
     aaagcagcta caacgttttg tgggtatggt aaattattac caccggttta ttccacacat      2820
     cgcagagata atgaaaccgc tgcacaaaca cattgccgtt cattccaagt taagatcaaa      2880
     ctcttgggat tggtctcctg aatgcgaaac agcgtttcaa aagctgaaag ctagtattgc      2940
     ccaagccaca ttgctcagct atccaaataa caatagtaat tacaatataa caaccgatgc      3000
     ttcaaacata gcagtcggag ctgtgttaca acaagataac aatggcactt gggaaccact      3060
     agcctttttc tcaaaacagc ttacagatgc tgaacaaaaa tattccacct ttgataagga      3120
     attactagca atctatttgg ctatcaaaca ttttcggtat ttcattgaag ggagggaatt      3180
     tttcatccta acagatcaca aacccctcac tactgctatt cactctaaag cggataaaac      3240
     tcccaggcaa tccagacatt tggatttcat atcccaattc acctcagata tacgctacat      3300
     aaaaggtgat agcaatgtcg tagcagacac gttatcacgc atcggtgaga atagtgagat      3360
     tagcttactg gattataata ctctaattat gagccaaaat accgatccag aattagaaaa      3420
     tgttttgaaa tatcaatcta aaaattcaaa atacaagtta gatagattgc aggtaaataa      3480
     tcaggggata tattttgaga cttcgactgg agtaaatcgc ccatacattc cggaacctca      3540
     tagattttca ctgttcaaag aacaacacaa tatttcccat cccggaatcc gagcgactag      3600
     aaaacttata gcttcaaaat atttttggcc caacatgaat aaaaacatta acgaatggac      3660
     caaagcttgc aataattgtc aaaaagctaa agtttacagg cacacgcgca cacccttgtc      3720
     tcggtttgac cttccatcag gaagattcga tcatatacat atcgacatag ttggaccgct      3780
     tcctctttcc gataatatgg catatatatt aaccgtaatc gataggtata ctcgatggcc      3840
     ggaagcattt ccaatagccg atattaccgc tgagacagta gccaaaacgt tagttcaaaa      3900
     ctatgtatct cgatttggat gtcctgtaaa catttcttca gatagaggta ggcagtttca      3960
     gtcgaaacta tttgctgagc tgactaagct cttaggtagt catcacatta ccactactgc      4020
     gtatcatcca cagtcaaatg gattagtgga acgttttcat aggcaattga aaggttcact      4080
     gatggcaaat gatacctctg aacgctggac tgaaaagtta ccactagtac ttttaggaat      4140
     acgaataaca cataaagaag atcttaaatg tactccagca gaattagttt acggacaaaa      4200
     tttacgtttg cctgctgatt ttctagcgcc gtcattaacg cctactcccg atacaatgga      4260
     ttatgtaacg cgattgaaaa acgttttcag caaaatatct cccacatcac cacgtcaatc      4320
     gaacactaag gtatacgtag ataaaactat cgaaacatgt aaaaaggtat acattagggt      4380
     tgatagggtt agagctggcc tcgaacctcc gtacgaaggg ccatacgatg tggttaagaa      4440
     actcaggaaa tattttgtta tcgacaaaaa tggaaaacat gaatccgtct caatagatag      4500
     gttgaaaccc gcatactatc tagaaaacgt acgaaaaaat gttcatttta cgctccgcga      4560
     aatagagggg gagtag                                                      4576
//
ID   Gypsy-18_AnFu-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-212
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2831-2831 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 212 BP; 71 A; 51 C; 45 G; 45 T; 0 other;
     tgtagcatcc acgctacttt caaccaaaga aacaaaacgg atcaggttcg tgcatcaaaa        60
     cggatcacct tcgcgcattt agcgagcgct accaaatagt atataagcag ggcaaattat       120
     caggtcaagg accagaaggt tttggcaagc cagcgagtga ggatctccga tcccgatttc       180
     tgtgaaataa aaagaagttc aaccccactt ca                                     212
//
ID   Gypsy-18_AnMe-I repbase;    DNA;    INV; 6025 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6025
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6830-6830 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           318..1580
FT                 /product="Gypsy-18_AnMe-I_1p"
FT                 /translation="MNNKVLALRNRTVQINTENITNIRITQTANHLNSTTI
FT                 SEACLTKNYSFKERLQILKAELLNQSAELDRAINGSHNSMAYEFPIKQAML
FT                 CIPEFYGDARDLDGFLYQIEYFANQIPEGEAEEDLIRTVMFKLKGKAAGFF
FT                 NRILDDTWEKVKMKLIRQFGEKFDIEAIFQQVETLHQGVNEPFSEYKERVL
FT                 TLKEQIINNDINNTEDSYAMKNLKIHFLAGLRKPELQTLARTNKHLHFNEL
FT                 LEYLQEEVVQIEHIRKIEERLNRTMISETNDTINNALFTNSIHNSVDNGSS
FT                 SSPHVQNRGITRNQQYVDFRNDSRTRCDNYINSTQLSDPNHFGLPQHNSTT
FT                 YNPNITNNTNNFSRPKRFPTPYRSYGAQHIPTQNNYSQYTPTQNNHPQGPS
FT                 QYNHFRNTYNQPQSHNSTNQKNYNTEH"
FT   CDS           1547..5023
FT                 /product="Gypsy-18_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QYKSKKLQHGTLVGLNKNSSVPIVKTDLFCLRAEEAQ
FT                 TIERDPITNSEYIHNYESLDIAFTTEGKLMVQILSESEKKKKINYLIDSGA
FT                 CSNALSWELAKELGCSTIDYQDKVTFSSFNGTLSDTVGSIFINLYVGKSLY
FT                 RTKFYVIRTLGVPGILGAEFLIKYTVNVGENFRTINLKKPSGENTEETEKK
FT                 WEHNTNTVIEDNNTIPQDNFELLPNIEKQLTDCDLIETSKSTPLVGLERFG
FT                 ELIKQINIDHLDSSIATDMKKILIEYKDIFYLPGDKLTYTQAATHEIETSS
FT                 NVPIYKRQYRFPALLNNIMEEHVEEMLKQKIITPSKSPWNAPVMCIPKKSD
FT                 SEGARKYRIVVDFRALNLITKPFIYPIPRIDDIMDNIGNSKLFSTIDLKSG
FT                 FFQIPIACKDAAKTAFSTSKGHYEFLRMPMGLKNSPSTFQKLMNTVLYSIQ
FT                 PVKAFVYLDDIVVFGETVEEHNFNLIKVLKALMQYNLKIEPLKCKLLHTEI
FT                 NYLGHTINEQGIKPTQGNVKVILDMPTPKSIKELRSFLGTINFYGKFIPNV
FT                 SEIRKPLHELLKKNKNFVWDEHCEKAFEKLKQFLVSEPLLVRPNYKDTFVI
FT                 TTDASDYALGAVLSNETTVDRPIAYASKSLVGAEKRYHPIEKELLAIVWAV
FT                 EYFKHYIYGQKFLIYSDHRPLVSIWRLKENSPILSRLRLRLQGVECEIRYK
FT                 KGKENVVADFLSRLPELNRNEIQEKQANKTVAVVTRQQSKHILESQNNKKE
FT                 NNVQEDVVKDEQEDHWGNLLKMHWDGDLNDKEMQRKEQLDKIKQTIKTKFK
FT                 NYSSDLNRIEIERSEVNTVLQEFHDAPLGGHVGVRRMKKRIKELFFWRGMD
FT                 SDIEGYVRCCKSCQLNKIGKFNKIPMQITTTSKYAFEKLYMDIVVLPESEG
FT                 GNKYGLVIQDDLTRYLIVIPLENQEATTVAKAFVEGVICLVGTPSELVTDQ
FT                 GTNFMSQVMKDTCRLLKIKKINTSAYHPQANVVERANRELKIYLRQFVGKN
FT                 YQTWDRVLPYFAMEYNTSVNSSTGFTPYELVFGKKARLPTSIFHKTDRKKL
FT                 YTDFCEELRTKLREIHAIARENLINSKTKRKAKYDQSANEWQPMWGEMVLV
FT                 RNNQTGVGQKLQGIWRGPYEVVEIPSNQTCVVRNGKKLEKIHNNRLKKFYD
FT                 "
XX
SQ   Sequence 6025 BP; 2347 A; 973 C; 1142 G; 1561 T; 2 other;
     tctggtgaca gcggtaaagc gcaaaattta gcgcatataa agtcatttct ggctggtgtt        60
     cttaacccgg gtaatttggt aacggtaaat attttagtga taagtggtgc agggaaaacg       120
     cagcgtcata gtggtaatta tagctagtga attaatttta atatacatat agttagtggc       180
     ctaatagtaa agtgcatagt tattaaaata ttttgaataa gttatagtgt acaaaaaaaa       240
     aacaaaaaaa cctttattta gtgatttttt tattaatcat agtcacatat tttttcgtac       300
     atataacata taaggtaatg aacaacaaag ttctggctct taggaacaga actgttcaaa       360
     ttaacaccga aaatataaca aatattcgta tcacccagac tgcaaatcat ttaaattcaa       420
     caacaattag tgaagcgtgt ttaactaaaa attatagctt caaagaacgc cttcaaatac       480
     ttaaagcaga gcttcttaat caaagcgcgg aacttgatag agcaataaac ggatcgcata       540
     atagcatggc ttacgagttt cccattaaac aggcaatgct ttgcattcct gaattttacg       600
     gagatgcaag agatctggat ggttttttgt atcagatcga atattttgca aatcagattc       660
     cggagggaga ggctgaagag gatttgattc gtacagttat gtttaagtta aaaggaaaag       720
     cagctggttt ttttaatcgt attttggacg atacgtggga aaaggtgaag atgaaattga       780
     ttagacaatt tggagaaaaa tttgacatcg aagccatttt tcaacaagtt gagacgcttc       840
     atcaaggggt caatgaacct ttctccgaat acaaagaaag ggtgttaaca ctaaaagagc       900
     aaatcatcaa caatgacata aataacacgg aagattcata cgcgatgaaa aatttaaaaa       960
     ttcacttttt ggccggttta aggaagccag aattgcaaac actcgcgaga acaaacaaac      1020
     atttacattt taatgaactg ttagaatatc tccaggaaga ggtagttcaa atagaacaca      1080
     tccgaaaaat agaagaacga ttaaatcgta caatgatttc cgaaacaaac gacaccataa      1140
     acaatgctct tttcaccaat tcaatccaca atagtgttga taacggaagc tcatccagcc      1200
     cacatgtcca aaatcgcggt attactagaa accagcagta tgtagatttt cggaatgata      1260
     gtagaacacg ctgcgataat tatattaaca gcactcaatt gtcagacccg aatcattttg      1320
     ggctaccaca acataacagc actacataca atcctaacat tactaacaac accaacaatt      1380
     tttcacggcc aaaaagattt ccaacaccgt atagaagcta tggtgcacaa catattccaa      1440
     cacaaaacaa ttattcacaa tatactccaa cacaaaacaa tcatccacaa gggccttctc      1500
     aatacaacca ttttagaaat acatataatc aaccccaatc acataacagt acaaatcaaa      1560
     aaaactacaa cacggaacac tagtcggtct aaataaaaat tctagtgttc ccatcgttaa      1620
     aactgatttg ttctgcctta gggcagaaga agcacaaaca atcgaaaggg atccgataac      1680
     aaatagtgaa tacatacaca actatgaatc actagatata gcattcacta cggaaggtaa      1740
     actgatggtt caaattttat cagagagtga aaagaaaaaa aagattaatt atctaattga      1800
     ttcgggagca tgttcgaatg cattgagttg ggaattagca aaagagcttg ggtgttctac      1860
     aatagattat caggataaag taacgttttc aagttttaac ggaacattat ccgacactgt      1920
     gggttcaatt tttataaatt tatacgttgg aaaatcgttg tatcgaacaa aattttatgt      1980
     tataagaaca cttggtgttc ctggaatact tggggcagaa tttttaataa aatatactgt      2040
     taatgttggg gaaaactttc gaacaataaa tttaaagaaa ccatcaggtg aaaatacaga      2100
     ggaaacagaa aaaaaatggg aacacaatac aaatactgtt atcgaagata ataatactat      2160
     accacaagat aattttgaac ttctcccaaa tattgagaag caacttacag attgtgattt      2220
     aatagaaaca agcaaaagca ctccattggt gggcctagaa cgatttgggg aattaataaa      2280
     acaaatcaat atcgatcatt tggatagttc aatagcaacg gatatgaaaa aaattctcat      2340
     tgagtataag gatatatttt acttgccggg agataaactt acatataccc aagcggcaac      2400
     gcatgaaatt gaaacaagct ctaacgtccc catttataaa aggcagtaca gattccctgc      2460
     attattaaat aatatcatgg aagagcatgt agaggaaatg ctgaaacaaa aaattataac      2520
     cccaagcaaa agcccatgga atgcacccgt gatgtgcata ccaaagaaat ctgatagtga      2580
     aggggcacga aaatatcgta ttgttgttga ctttcgtgcg ttaaatttaa taaccaaacc      2640
     atttatatac cctattccga ggatagatga tattatggac aatattggaa acagtaaatt      2700
     gttttcaaca attgatttga aatcgggttt ttttcaaatt cccatagcat gcaaagacgc      2760
     tgcaaagact gcattttcaa cgtctaaggg acactatgaa tttttacgaa tgccaatggg      2820
     tctcaaaaat agcccatcaa cattccaaaa gctaatgaac acagtcctat actcaattca      2880
     gcctgtcaaa gcgtttgtct atctagatga tattgtggtg tttggcgaaa cggtagagga      2940
     gcataatttc aatttaatta aagttcttaa agcactaatg caatacaatc ttaaaattga      3000
     accattaaaa tgcaaactcc ttcatacaga aattaattat ttgggccata ctataaatga      3060
     acaaggaatt aagccaacac aaggaaatgt gaaagttata ttagatatgc caacaccaaa      3120
     aagtataaaa gaattacgat cgtttttggg gacaattaac ttttatggta aatttatccc      3180
     taacgtctct gaaatcagga aaccattaca cgagctactg aagaaaaata aaaatttcgt      3240
     ttgggatgag cactgtgaaa aggcatttga aaaattaaaa caatttctag tttcagagcc      3300
     tttgctggta cgaccaaatt ataaagatac ctttgtcatt acaaccgatg ctagtgatta      3360
     tgctcttggg gcagtattat ccaatgaaac aacggtagac agaccaattg catacgctag      3420
     taaatccctt gtaggtgcgg aaaaacggta ccatcctatt gaaaaggaac ttttggctat      3480
     tgtatgggcc gttgaatatt ttaaacatta catttatggg caaaaattcc taatttattc      3540
     tgatcatcga ccgttagtat cgatttggag gctcaaagaa aactctccga tactatcaag      3600
     gttaagatta cgactccaag gggtggaatg cgaaattcgc tacaaaaagg gaaaggaaaa      3660
     tgtagtcgct gattttttat caaggctacc agaacttaat cggaacgaaa tacaagaaaa      3720
     acaagcaaac aagacagtag ccgtagttac acgccaacaa agtaaacaca tattagagtc      3780
     acaaaataac aaaaaagaga ataatgtaca agaagatgtt gtgaaagacg aacaagaaga      3840
     tcactgggga aatttgttaa aaatgcattg ggatggggat ctaaatgaca aggaaatgca      3900
     gagaaaagaa cagctagata agattaaaca aacaattaaa accaaattta aaaattacag      3960
     ctcagatctg aacaggattg aaatcgaaag aagcgaagtc aataccgtgc ttcaagaatt      4020
     tcatgatgcc cctttaggag gacatgtagg ggtaagaaga atgaagaaaa ggatcaagga      4080
     gttgttcttt tggagaggaa tggatagtga cattgaaggt tatgtcagat gttgcaagtc      4140
     atgtcaactc aataagattg gaaaatttaa caaaatccct atgcaaatta ccactacctc      4200
     gaaatacgca tttgaaaaac tatatatgga tatcgttgtc ctaccagaat cagagggggg      4260
     taacaagtat gggcttgtca ttcaagatga tcttacaaga tatcttatag ttattccctt      4320
     agaaaaccaa gaggcaacaa cggttgcaaa agcgtttgtt gaaggggtaa tctgtcttgt      4380
     aggtacccca tccgaactag taacagatca gggcacaaac ttcatgagcc aagtcatgaa      4440
     agacacttgt aggttattga aaattaaaaa aattaatact tcggcatacc atccacaagc      4500
     gaacgtagta gagagagcaa acagagagct aaaaatttat ctgagacaat ttgtgggaaa      4560
     aaattatcag acgtgggaca gagtattgcc atattttgcg atggagtaca atactagtgt      4620
     aaactcctct actgggttta cgccttacga attggtattc ggtaagaaag ctagattgcc      4680
     aacatcaata ttccataaaa cagatcgtaa aaagttatat acggattttt gtgaggaatt      4740
     aagaacaaaa ctaagggaaa tacacgctat tgctagagaa aatttaatta attcaaaaac      4800
     aaagagaaaa gcaaagtatg accaaagtgc aaatgaatgg cagcccatgt ggggagaaat      4860
     ggttttggtg aggaataacc aaacaggtgt agggcaaaaa ctacaaggca tttggagagg      4920
     gccatatgag gtagtggaga tacccagcaa tcaaacttgc gtggtaagaa atggaaaaaa      4980
     gttggaaaaa attcacaaca ataggctaaa aaagttttac gattaaacaa aaaaaataat      5040
     aataaggttg ataccaatac gtcaatagat taggcataga tttagagata gggaataacg      5100
     gaagtatggg atatagatag ccagatagat aggagttatc atataaagga tatagatagt      5160
     taggtaaata ggattagtag taggattagg attaggaaag gtaaatagga tatgaaagat      5220
     ttaattgtga atagatatat ataaacacaa gtataataac gcattaaaag aagaatcgaa      5280
     ttatgaaatc gcgcagaact ttggcaatta tacggttttt atataaatct atggaaaaag      5340
     ttgtaaatta ggaataagga ttactaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5400
     aaagaamtwg aagaactagc acctcataac ttttacgcga cacttttagc ctacacacac      5460
     gcacacatca gcaaaattgt atacgttaca ctatacacac atggaacagc agcgagtgga      5520
     acaatagaaa cacgggttca gggaggtcgg cacaacgcca aatgtaacac caacaatgtt      5580
     acgagttgct tttcgtcttc acacatgacg gcaccgatga agatgaattt tatgatagag      5640
     gttgagctgg tgaggttgag ctgtagattg agcggcgcaa ttgaatgatg aggcatcaaa      5700
     ctaatatgca aatagctccc ccagcaagtg ttcgactcac ggttagcagc attgaattta      5760
     taacgagcgg tcagaacaat acaccctatc aaataagaga gaaagcaatt acacgaaacc      5820
     gaagcattat caaattaaat agatatactt atttagcgag gtacaccagc accatcacac      5880
     gtctattgaa agcacgagga aggtttgccg gatgcgataa aaaagggcaa agttcggcga      5940
     taacaatatc gatatgcatg aaaaaaacaa tccacgtcgg aattttcttg ctaaagcttc      6000
     gttaaaaaaa aaaagtgtaa tgaca                                            6025
//
ID   Gypsy-18_AnMe-LTR repbase;    DNA;    INV; 310 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-310
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6855-6855 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 310 BP; 98 A; 47 C; 93 G; 72 T; 0 other;
     tgtagcgacc ttggccgcta cgatatagac cgtcgatgac agctgataac ggcggccgta        60
     tccatacagg cggctaatga acacgaaccg tgaaatagga gaggatgtga gagaaagatc       120
     atcgtgagaa tggagagagg acaaggttga cgatcgaagg agcaaacggg cgatggcggt       180
     aaaagatgaa ggagattctg gtgtcggtgc ttggctagat cggaagtgta gttaattgaa       240
     ataaaagttc tggtgttggg gagcataaaa tttagcattt tatttataac aaatagttct       300
     aaccgtttca                                                              310
//
ID   Gypsy-18_AnSt-I repbase;    DNA;    INV; 5044 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5044
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 801-801 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5044 BP; 1738 A; 882 C; 1094 G; 1329 T; 1 other;
     tttggcgacg aggagtaaaa tacagtaata gtgaagagaa gaagaagtga aggaaagaca        60
     gatattctga aaattaaaag ctatgaatcc tatgggtaag catgattaac atgggagtat       120
     gtaagaatgg aaaaattagg ttcaatcgac tagtttggtt gcttaaatgc agtgagtggt       180
     tttacagaaa acccgtgaat tgttggcgtt atggaaacag ccatgcttaa atgcgaagga       240
     caaatatgag cttaaatgct gagaaaattt gcattttttt tcttctcgat agtaatagtg       300
     aaaatggtcg tgcttaaatg cgttgcgtca tgctttaatg cgaagaatat acataagctt       360
     aaatgctgag atattttgtt gatggcatat gggaagtgat accaaaattg catgtgaaag       420
     ccattattaa tccgacgatt tgtttcaatg catgcattca tatcgcgctg aacggctaac       480
     ataaagacaa gcagaagcgt gtttgagcac gaataagatt gtatggaatg cacgagttcg       540
     cgggaaaaga gtgcggactc tgtccagtgc gaagattgtt gacacacgca tacagtgaac       600
     cagccgtgtc aaacccattt ggttataacg ttataccgtg ccagttagca tcctgtgaac       660
     aaatacgtag atcgctggtt tgacacactt gcaatggggc attgttaaac gcttgacact       720
     aacggtcgta tctttgtgta ggtagagatg tgtatagatg tgttcttttg ttctataaat       780
     ttatttcaga catgttgcga atgccgggca ttttgcccta tccgttcaat tatgaagagc       840
     attcggaaaa tacaggcgtg gaatggaaaa agtggctcag atcgttcgaa tttacgatca       900
     aagcatgtcg aatcgtcgat gaagattgga aaaaggatct tttacttcat tttgttggcc       960
     caaatgtgca gcaaattttt gagacgctac cagaattacc gaacaccgag atgcgcggcc      1020
     cgcttgcaaa tgtcgagcaa tacaccccaa acatgtcggc ttatgaagaa gcagttgcaa      1080
     gattggataa attcttcctt ccaaagcaga acccaacgta tgaacggcat ttgtttcgac      1140
     aagtaaaaca aaaatctgga gaaagctttg atagtttcat catgagattg cgtgtacaag      1200
     cagaacgatg taatttcggt gaaaagttag aagagcacgt gaaagaccaa gtgatagaga      1260
     attgccaatc tgcagcatta cgccgagagt ttctcagaca aggtgatgcc agtcttgaca      1320
     aaatagtgag cgttgccaaa atcttcgaga ctgttgccca tcaagaaaaa tcattcgctg      1380
     gtagcaagga gcatgttgat ctggtgcata gcatagaaga acctcagcat ggcaagaaga      1440
     gaaaaatacc tgaaccaaaa caacaagaat gtcatcgatg tggctattca ggacacctag      1500
     cgagagaaaa taaatgcccg gcaaaaggaa aaatatgcaa caaatgtgga ggcagagacc      1560
     actttgcaaa aaagtgccgc actaagcagt ccgaaaatta cccgagaaaa ttccctcgga      1620
     agcaggaccg ttactataac acaaccaata aaagagacca agagaacaat gcagtgaacc      1680
     acgttgcaaa cgaaaaagcc gaatacgttt ttcatcttac atcttcagac aacaacactg      1740
     tagtagattg cattattgga ggtgtcggaa taactgcagt aatagattct ggatcgaaat      1800
     acaacctgat cagtaagaaa acatgggaag aaatgaaatc gctccacata aaggtaacaa      1860
     atcaaagacg agagactgca ttaaatctca aagcatatgg tgggcagcct ctatcaataa      1920
     tcggcatgtt cactgctaca atctcccttg gtacggctaa gacagttgca gatttttacg      1980
     ttgttgaagg ggacggaaaa acccttatcg gccgtgatac tgcaatctac atgggaattt      2040
     taaaaataag cataccagta aatgctgttg aaggcgagaa gggcaagtta ggaaccatca      2100
     ataatatcgt tttggatttg ccgattaagc ccgatgcagt accagttgcc caaccatatc      2160
     gtcgtatccc agttgcttta gaaaagctgg tggacaaaaa gctggacgaa ttgctggagc      2220
     aaggagttat tgaacaagta aatgagccat caaagtggat atctccagta gtggtagtgc      2280
     caaagggaga tgacgacgtt cgtatctgtg tggacatgag acgagctaac gaagcggtgg      2340
     aaagagagaa ccatccctta ccaaccttcg aagattttct gccagaattg gtgaaggcaa      2400
     atgtattttc tcgattagat gtgaagaatg cttttcatca ggtatgttaa aaaaaaacgc      2460
     taatagagaa atcatgattt gtagaaatta cggcaaatgt aaatctcttg aactcgagaa      2520
     ttgaaaaaaa aaaaaaaaaa gaatggcatg acatattttc ccattatttt gtttaatttg      2580
     aatttaatta tgtcttttaa ttttaggtag aaatatcgaa acaatctcga agtattacaa      2640
     cattcattac acgacgaggg ttattccgct atacaagact aatgtttggt ataaattgtg      2700
     ccccggaatt gtttcagaaa ctaatggaac aaattctgac tggctgtgaa ggctgtttga      2760
     atttcatcga cgatatcatt gtttatggac cggaccaaga acagcatgat gaaaggttaa      2820
     aaaaagtcct ccagcgtcta aaagagtgga atgtgctttt gaatgcagaa aagtgcacat      2880
     atggagtaca gcaaacgaaa tttttaggac acgttttgtc tgcaaatgga atcacaccag      2940
     ataatgacaa ggtggaatcg attcggaact ttagggaacc taaatcaggg gaagaggttc      3000
     gtagctttct ggggttagta aactatttag gaagatttat tcccgattta gcaaccatta      3060
     catttccgtt aagacagctg acaggtcata atcaagtttt catttggaaa tccgagcaac      3120
     aagaggcatt taacaaacta aaatcaatca tgatgtgccc ttcaacatta ggctactttg      3180
     atgtctcgga tagaacgcag cttatagcag atgcgagtcc ggtcggcctt ggagcagtgt      3240
     tggttcaaat agatgcacaa agtgttccac gaattatagc ctatgccagt aaaagtttat      3300
     caattgttga aaggcgatat gcccagatag aaaaagaagc tttagctttg gtttgggctg      3360
     tagaaagatt tcatttttat ttatacggac gtaattttga attgattacg gaccataaac      3420
     ctttagaaat tattttcgga ccgaaatcaa aaccatgcgc taggatcgaa aggtgggttg      3480
     ttcgcctaca atcatacaaa gcatctgtca tttatagacc agggaaaact aacatcgccg      3540
     accccctatc acgtctagcc attacggagg ttgtggatgg gaaaacattt gacgaatgcg      3600
     gggaagaata tgtttcttgg atagtttcta atgcatcacc agtcgctctt tctttgaggg      3660
     aaatagaaca agcttcagag gcagacgaga ttattcaagc agttcgtcaa gggcttgaaa      3720
     aagatgtttg gtctgaagat acttcgtcat ttaagacgtt ttctacggaa ttgtgctttg      3780
     cagataaaat tctgttgcgt ggcactagaa ttgttattcc aaatctatta cgagagcgaa      3840
     ctttgcattt agcacacgaa ggacaccccg gtatgaccat catgaaacaa cgtctaagag      3900
     ctaaagtgtg gtggcccaaa ttagatcaac aagtcgaaaa ttacgttaaa aagtgcaagg      3960
     gctgcatgat ggtctctata ccatctgcac ccgagccaat gataagaagg gaactaccat      4020
     cggcaccgtg gcaacatgta gcaatagatt tcctcggtcc actcccttca gggcattctt      4080
     tgttggtcgt agttgattat ttcagtagat atatagaagt agaaattatg aaaaagatcg      4140
     actctacaga aactataaaa cgacttaatc caatttttgc tcggttcgga ttacctttat      4200
     ctataactgc agataacggc ccccaattct ctagtgatga attcaaagtg tattgtagta      4260
     cgaataatat taatttgata agcacaacac cttattggcc tcagcaaaat ggagaagttg      4320
     agagacaaaa caggtcttta cttaaaagat taatgattag tcaatcaatg aacactgact      4380
     gggaagaaga attgaacaaa tatcttctaa tgtatagatc atctccgcat tcaacaacta      4440
     aaagaacacc atcagaaatg cttttgtcat acaatattcg tgatcgactt ccatctattt      4500
     atgaaccaaa aattgcagac gaagaaatat cagaccgtga taaaatttca aaagaaaaag      4560
     gcaaactata cgcagataaa cgcaggaacg ctaaawgtaa ccctatagct gaaggagatg      4620
     aggttctaat gaaaaaaaca tttaaagcta acaaattgtc aacaaatttt ggatccaaaa      4680
     ttttcaaagt cgtgaaaaga aaaggaggtg atgtagtagt ggaatgcaaa gaaacaggag      4740
     ttcagtatcg taggcatgtc tctcatttat taaaaatagc tgttgacgaa agcgctccgg      4800
     catcttcttt aaatgaacgt aacaaatctg taggcattaa tgatacttca gttccggcta      4860
     ccacatcaag caaacagcac ctcgtaaact cacaggcatc gttagaacag gagttacaaa      4920
     gaagtaagcg aactataacc aaaccaactc atttaaaaga ttatgtgagc acagttgaag      4980
     ttggtttata atagtagagt taggataaaa tgaattatga aaaattataa aaagaaaaag      5040
     tgaa                                                                   5044
//
ID   Gypsy-18_AnSt-LTR repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-139
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 814-814 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 139 BP; 46 A; 24 C; 36 G; 33 T; 0 other;
     tgtagtgtag caacctttag ggatacctta gtttagtaac cttggtttgc taattgggta        60
     acatgggcta gcgaagaata aaacgacagt tgtgtggaga acacgagaca gaacagacgt       120
     gcacaaacgc gatactaca                                                    139
//
ID   Gypsy-18_BTa-I repbase;    DNA;    INV; 7314 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7314
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 682-682 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2812..5703
FT                 /product="Gypsy-18_BTa-I_2p"
FT                 /translation="MLNCSGRTKLVDAIVDQVNLRYQDEYISLDSFQTRLE
FT                 SNSLTVLDDDPSIPFDSFYSKLKHEILTDKEIREKIESLNLNDEQKQQLFD
FT                 LISEFVHVFSNLPGKCNKFTAKFRLSDANVFVKRTYPIPFSKLDAVKKEIM
FT                 NLLDLGILEPSSSPYSNPLVPVTKKDGSTRVCLDARFLNAKIISDAETPDR
FT                 IDSLLGKFKRPMFVSKLDLSQSFLQIPLTEDSRDYVSFVFQGKNLRFTRVP
FT                 FGTKVSMQMFNKALDNVLGPEVDDFSLRYVDDLLIISETFEEHLQHLRIFF
FT                 EKFAEAGMTLKFSKCMFVQPKTDFLGYVITPDGIEVDPSKIRAITDFPAPK
FT                 DVKSLQSYLGLLNFYRKFSVNHSAIIEPLQRLLKKDVPWRWGEIEKRAFEE
FT                 SKNCFVKTVVLAHANFTKRFYIQTDASYVCISGELFQYDDEGNQRPICFYS
FT                 RVLTPCERNYFVTELELLAVVTCCAKFQQYILGLPTTLRTDHKALIFLNKC
FT                 TLSSGRLMRWALFLQQFDLDIEYVKGSDNIVADTLSRHPPELHNLPPFDLE
FT                 LNISKISVVPNFTNTFKNISDAQKSDPEFGPIYDNLSNNVTLKYNDLYTLH
FT                 KNVLFHRNTHNCNWRVCIPKSMETDIINAAHLSIGHFGCTKTAKYLSSFVY
FT                 FANLDSKTRKIVTSCLDCQKSKTPQHYFRSPMHPILAEKPLELVSIDLMGP
FT                 LPKSKGNFCHILVVLDVFTKYLKLYPLRSATAVAVTRKFLTCYVPEVGKPS
FT                 AVLSDNGPCYRSKLWNNRLQEIGILPTKSSVYHPRSNPVERYMKLLGNFFR
FT                 IYCHDNHCSWIKYLSFWEMCVNHTHNSSVSCTPYELMHKQKAHNFFDNFLS
FT                 FPESEKTDFNKLQILARDKLHSQAQKRKQQYDEKFHLITFKIGDKVLLRQH
FT                 NLSNASSGESKKFFHLYEGPFIVESIVRGNAYRLQDPETLEIVGVHNASHL
FT                 RPLVSAETG"
FT   CDS           join(980..2323,2305..2745)
FT                 /product="Gypsy-18_BTa-I_1p"
FT                 /translation="MSGPNTRYQHLRRSTVPERRGRGRGRGRGRGRGFVPV
FT                 TDPPVGINVPNQPNNFQLLPAYQPRLFINPNMRDMFDWNIGNNSSHNLGNP
FT                 SHDRVQINEVFDSEVGHGFEHQPAQNAMQHNVHVSPAPSSRAPSRMSHIHS
FT                 EVPQAETAMSDGVGSVLQSLTNELREMRISLPSIIQNEVERQISENSSRNS
FT                 VPIPQNVTSPTQSLRRTSIASVNSQEPASRSVGSKVYRSSLKLKDLPSYNG
FT                 TLYPVHPVEFLKSVTTFYESSNAPDHVILNEIVQILKEKALTWYNVYRSKA
FT                 STFSEFSSDFLEFFWGPKVQDNVSANLFTPNQYRKGSLDMCSYFLKYIHKA
FT                 QYLDYAIPEPVLVSTILRHFPPGIRRNLHLSNCDTISVALEQLRILEADPD
FT                 LSSEIPLFNSSQNKPTQPTNLASSKKPYGVHQVDFVFSVPPPTNNAVDDAT
FT                 SLNRCNLFKLNECWGETPRPALNLNDLNSPLTHPLFSLSLYQIDFLSADEK
FT                 TCFQLTAILPADTLFVNYSYQLPQFKASIKLLFTLRAENLEFLSEQLNKTH
FT                 LSAHPTWIHFGNQFVKDFIANELCVSLWKSVCERFYCQRTLCLKLSRC"
XX
SQ   Sequence 7314 BP; 2127 A; 1579 C; 1251 G; 2356 T; 1 other;
     gattggcgcc caacgtcaaa cctgtgttct tcaagtgttt taactgtgcc ttttaagtga        60
     acaagtgaac ataaacttta attcaatttc cttcatcatt atgtgagtgt gaaagctgct       120
     tcgtttcttc caaggaatcg ccgttggaag cggccgccat cttggcgtcc tcctcggtct       180
     aactcttttt gattttagtg ctttatttct caataatgtc ttttatttgt gtcattggct       240
     accaagagtc tctgctctgc agggtgaggg agttcagtga ctttaatttt acacatatct       300
     aattttcaca tcttaatcta tcttgcggtc gcacagtgat tcttaaccta cacacgtctc       360
     atcaaagtct catcaaatca accwaataat aatccaacaa tatgaaactt cacaataaat       420
     caacctttac aacaacaatt ctttctaatc aacctaaaca tatttcaata taatgtaatt       480
     taatcttgat tctaaatgtg ctacgctggt gtgccgatat ctttgcatcg cggaagggtt       540
     agccttttcc cctaggaaaa aagttgacaa catcttaaac ccagtcttgc ccctttcctg       600
     ggaaactaca aagataaagg acggcagttt tttttttcat gcttttttct gaaacaaaaa       660
     taaaagccgg atcatccgtt tgtcttctct gtctggtggc actcttggtc tggttggagt       720
     aactggtggt tttctctgtg catcgtgagg ctagatccaa ccctgtgtcc tgtttgtcaa       780
     cacgaactaa tccagatgac ttcgcttctc tttcagcagc cttgcctggc ttcgtctgtg       840
     gtctacgtgt gtgccttccg tgtatcttca tcaacgttcc tggatcatca catattaatc       900
     tgcgtatcgt atatagtctt aagtttttac acatcattct actttgtttg atatatcttg       960
     tttacgttta ttcatagtta tgagtggtcc aaatactcgg taccaacatc tgcgcaggtc      1020
     tacggtccct gagcgtagag gtaggggtag gggtagaggc cgcggtcgtg gtcgtggttt      1080
     tgtacctgtc actgatcctc ctgttggaat aaatgttccc aaccaaccaa ataatttcca      1140
     gctcttacct gcgtatcagc ctcgcctgtt tattaatccc aacatgcggg acatgttcga      1200
     ctggaatata ggtaataact cttcccacaa tcttggtaat ccttctcatg atcgagtgca      1260
     gataaatgag gtttttgaca gtgaagtagg tcatggtttc gaacatcaac ctgctcagaa      1320
     tgccatgcag cacaatgtgc atgttagtcc ggcaccctct tctagggctc cttcacgcat      1380
     gagccatatt cattctgaag ttccccaagc tgaaactgca atgtctgatg gagtaggctc      1440
     tgtgctacag agtttgacca atgagttgcg agagatgcgg atctctttgc cctcaattat      1500
     acaaaatgaa gttgagcgtc agatcagtga aaattcgagt agaaatagtg tacctattcc      1560
     acagaatgtc acttcaccta cccagtcttt acgacgtaca tcgattgcta gtgtaaattc      1620
     tcaagaacct gctagccgat cagttgggag taaggtttat cgaagttctc ttaagttgaa      1680
     agatttacca tcatacaacg gcaccttgta ccctgtacac cctgttgagt ttttaaaatc      1740
     tgtaactacc ttctatgagt catcgaatgc ccctgaccac gtgattttaa atgagatagt      1800
     gcagattctg aaagaaaagg ccctaacctg gtacaatgtt tacagaagca aagcttccac      1860
     tttttctgag ttcagctctg atttcttgga atttttttgg ggacctaaag ttcaagataa      1920
     tgttagtgct aacttgttta ccccaaatca gtatcgtaaa ggttctttag acatgtgctc      1980
     gtatttctta aaatatattc ataaggctca gtaccttgat tatgccattc ctgaacctgt      2040
     cttggtttca acaattttaa gacattttcc tcctgggatt cgtcggaatt tacatttgtc      2100
     caattgcgat accatcagtg ttgcattgga acagctcagg attttagagg ctgatcccga      2160
     tttgtcatct gaaatacctc ttttcaattc atctcagaat aaacccaccc aaccaactaa      2220
     tctggcttcg tcaaaaaagc cttacggggt gcatcaggta gattttgtat tttcggtgcc      2280
     cccacccaca aacaatgctg ttgacgatgc aacctcttta aactaaatga gtgctgggga      2340
     gaaacacctc gcccagcact gaacttgaac gatctgaatt cacccttaac ccaccctctg      2400
     ttttctctct ctctatatca aattgatttc ctcagtgctg atgaaaaaac atgcttccaa      2460
     ttaactgcca tccttccagc agatacactc tttgtgaact actcttatca attgccacaa      2520
     tttaaggcta gcatcaaact tttatttact cttcgagcag aaaacttgga gttcttgtct      2580
     gagcagctca acaaaactca tctgtctgct catccaacat ggattcactt tggaaatcag      2640
     tttgtgaaag attttattgc caacgaactt tgtgtctcac tttggaaatc agtttgtgaa      2700
     agattttatt gccaacgaac tttgtgtctc aaactcagta gatgttgatc agttcacttc      2760
     tttaacactt cgaaatattt tgtagaaagt gattttgaga gagccagtcc tatgttgaac      2820
     tgctcaggga gaacaaagct cgtggatgca attgttgatc aggtcaactt gagatatcaa      2880
     gatgagtaca tcagccttga ttcatttcaa acccgacttg agtcgaattc gttaaccgtt      2940
     ctggacgatg atccgtccat tccatttgat tctttctatt ctaagctaaa gcacgagatt      3000
     ctcactgaca aggagataag agagaaaatt gaatcgctca atctaaatga cgaacaaaaa      3060
     caacagcttt ttgacctgat cagtgagttt gtccatgtgt tttcaaacct cccaggaaaa      3120
     tgtaataaat ttactgctaa gtttcgcctg tcagatgcca atgtatttgt taaacgtacc      3180
     taccccatac ccttttcaaa acttgatgct gtcaagaagg agatcatgaa tttgttagat      3240
     ttaggaattc ttgagccaag ctcaagccca tactcaaatc cattagtacc agtgaccaaa      3300
     aaggatggta gcacacgagt atgtctagat gctagattcc ttaacgcaaa aatcatctct      3360
     gatgctgaaa ctccggatcg aattgactca ttgttaggaa aatttaagcg tcctatgttt      3420
     gtatctaaac tagatctaag tcaaagtttt cttcaaattc cactcacgga ggattccaga      3480
     gactatgtga gctttgtatt ccagggaaaa aaccttcgtt ttacgcgagt gccttttgga      3540
     acaaaggtat ctatgcaaat gtttaacaaa gcgcttgata atgtattggg tcctgaggta      3600
     gatgatttct cgcttaggta tgttgacgat ttattaatta tttctgaaac atttgaggaa      3660
     cacctacaac accttcgtat tttctttgaa aagtttgctg aagctggaat gacgttgaaa      3720
     ttctcaaaat gtatgtttgt gcaacccaaa acagattttt taggctatgt tataactcca      3780
     gatggaattg aagttgatcc atctaaaatc cgtgctatca cagattttcc tgcacccaaa      3840
     gatgtaaagt ctcttcaaag ttatctcggc ctactaaact tttatcgcaa attttcagtg      3900
     aatcactccg ccatcataga acccctccaa agacttctaa agaaggatgt gccctggaga      3960
     tggggtgaaa tagagaagag agcttttgaa gaaagcaaga attgttttgt gaaaacagta      4020
     gtacttgccc atgctaactt tacgaagaga ttttacattc aaactgatgc ttcctatgtc      4080
     tgcatctcgg gtgagctatt tcaatatgac gacgagggaa atcaacgtcc catttgtttt      4140
     tacagtcgag ttttaacgcc ctgtgaaaga aattattttg taaccgagct ggaattactc      4200
     gctgtggtaa cttgttgtgc caaatttcaa caatacattc taggcttacc aacaacactc      4260
     agaactgatc ataaagctct aattttccta aataagtgta cattatcctc tggccgactc      4320
     atgcgttggg cacttttcct ccaacagttt gacctggata tagaatatgt taaaggaagt      4380
     gataacattg tcgcagatac tttatcgagg cacccgcctg agttgcataa tttacctcct      4440
     tttgatcttg aacttaacat ttcaaagata tctgtcgttc ctaacttcac aaataccttc      4500
     aaaaacatat ctgatgctca aaaatctgac ccagaatttg gtcctatcta tgataatctt      4560
     tccaataatg taacattaaa atataatgat ttatacactc tacacaaaaa tgtacttttt      4620
     cacagaaaca cacacaattg caactggaga gtttgcattc caaaatctat ggaaaccgat      4680
     ataataaatg cagctcattt gtccatcgga cactttggat gtactaaaac cgccaaatac      4740
     ttgtcatctt ttgtgtattt tgccaactta gactcaaaaa ccaggaaaat tgttacctca      4800
     tgcttagatt gtcaaaaaag taaaacacca caacactatt ttcgatctcc tatgcatccc      4860
     attttggctg aaaaacctct tgaacttgtc tccatcgacc tcatgggtcc tctccctaag      4920
     tctaagggta atttctgtca catactcgtt gtccttgatg tcttcacaaa ataccttaaa      4980
     ctgtatcccc tgaggtctgc tacagcagta gctgtaacca gaaaattctt aacctgttat      5040
     gtcccggaag taggaaaacc ttcggcagtc ttatcagata atggtccatg ttaccgttct      5100
     aaactttgga acaaccgtct tcaagaaata ggaattttgc caacaaaatc ctctgtttac      5160
     catccaagat ccaaccccgt tgagaggtat atgaagcttc ttggcaactt ctttcgaatt      5220
     tattgtcatg ataaccattg ttcatggata aaatacctat ctttctggga aatgtgtgtt      5280
     aaccacacac ataattctag tgttagctgc actccctatg aactcatgca caaacaaaaa      5340
     gcccataatt tctttgacaa tttcctttcc ttcccggaat ctgagaagac tgattttaac      5400
     aaacttcaaa tcttagcccg tgacaaatta cattcccaag cacaaaaaag aaaacaacaa      5460
     tatgatgaaa aatttcactt gataacattt aaaataggag ataaggtatt acttagacaa      5520
     cacaacttgt caaacgcatc gtccggagaa tcaaaaaagt tctttcatct gtatgaaggc      5580
     ccattcattg tagaatcaat tgtaagaggt aatgcctatc gcttacaaga tcctgaaact      5640
     cttgaaattg tcggggtgca taatgcctca cacttgagac ccttagtgtc tgctgaaact      5700
     ggttaatcag cctctcatca atttatattg ttatcctcaa atcattttat acaaaattat      5760
     cctcataata ttaatattgt aaaactatgc ttctattgaa ttcacacatt tatatataag      5820
     aataaacaac caaaatcaat gtaaacaaaa aacttaaacg tatgcggacc actcataact      5880
     agttgacttt aacaattcaa cttatacttt atatcttcaa gtttgcttca acagtttccc      5940
     acgtcctaag taaaaaaaaa aaaaaaattc tgcgaatttt ttttttctcc gggaaactgg      6000
     ggggtcaccc aaatcaaact tgtactcttc attataattt aagtcatatg ttctattcat      6060
     gttcttcaaa atgtccttgg aatgaaactg agcagctcac cattcaatca gttaacaata      6120
     attcctagac aaggtccgtc caacttcatt cctttgatca gtcttggtat ccgcaccaca      6180
     tccgaatctg ggaagaggca gattcgctct tgatcaaaat gagatttaag tgtctccact      6240
     ctaaatcgac ttgttccttt cttttttttt gccacagttt ttttttatca agtacagacc      6300
     cctacatgaa cagataatat tttcaacgtc ggatctcctg caggggagat gggcaatgaa      6360
     atatttcatt ctcaagtcat gttcaacttg agaacacccc atgtgtgcat aagcaggcag      6420
     ggcccgcaca tggttaaaaa atatcttcct tagtgtatct tttatgtcat tcttgagtcc      6480
     acctatggaa cctttttcta ttattttttt tttaccctca agaatcaatg tttccttcgt      6540
     attagggtac tcttgctggg acgtttcctg aaggggttaa gcgacagtaa cttgcccgac      6600
     tctcttctgt catgcctaaa gtgcactagg gttccacctg gaacttttgt tttattttct      6660
     cttactcgcc caaggacaac cacccttctt tctcttgagg tccgtgctcc aacaggctca      6720
     aaatgttgca caaccaatga acaattccgc gacagacatc agtcttaaat ttttttttac      6780
     cctccctgtc cccttggata ctttaacatt aattttccga tggtcttgtc atgtaatcaa      6840
     atttcaaatt taacgatggg aacgtcaagt tcatcagtta catctctcta tcttctcact      6900
     ctctaaagaa aataataact gattgggtgg taccacttcc taaaattttc ttttaagccg      6960
     acccgacccg aaaaatgttt ttctcattta tgtcaatttt cttgtcattt gtaatttttt      7020
     caatgtactt aatgattctc atttcattgt tcaaactaga gctattgaaa aatgtctcac      7080
     agttaccttt tgttacattt gtgaatttat tttattttgt attctaattt tgaataaacg      7140
     gcgaatcctc aaggatgaaa aaataaagac cagtagtaat aacattgcaa acccaaccga      7200
     tgaatttagt cttctactct ctcaaagtgt gtaacgattg ttttttgcgg gaaactccgc      7260
     tcttctctct ccaacacttg tgttggatga ctgacacgga agagtggggg tatc            7314
//
ID   Gypsy-18_BTa-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-399
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 692-692 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 399 BP; 66 A; 101 C; 91 G; 140 T; 1 other;
     tgtagtatgg tcccctttaa atttaaaatt tatcaaattc ggcgccctcc aggccggcag        60
     ccaatcccgt gggagcactc tcgaacccag aaagtgacgc cataggtgct gctttctggt       120
     tggtcgagag tgctctcagt tcgtttttgg ctcgtttttc ctggatgtgc gwgtaagtcg       180
     tttgctctcg attttttccc tttttggggg taatccttgc ggattacccc ccatctttca       240
     tcggttcggg tcggtaatgt ctctgtagtt aaattttggt cacgccaaac taaagttttg       300
     tgttccttgt tcattttcat ccctttttca tttgtggcat gtggcctgag tctctagccc       360
     ggcgctcagc agtctgttct gttaccccac atcgcttca                              399
//
ID   Gypsy-18_CQ-I repbase;    DNA;    INV; 4464 BP.
XX
AC   AAWU01022777;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_CQ_;
KW   Gypsy-18_CQ-LTR; Gypsy-18_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4464
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 415-415 (2011).
XX
DR   Genome; AAWU01022777; Positions   31891   36354.
XX
CC   Positions [3520-3969] - Integrase core
CC   'GTGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           269..3562
FT                 /product="Gypsy-18_CQ-I_2p"
FT                 /translation="MPDDKTNVTATAPVVEKRTKGRFPVYLAGLNVNSYLQ
FT                 TVEIYFKLNQTPNDEKALEFITSVGQETANRIIGSFKPEKIVNKSYEQIIE
FT                 KFQKLHEENKNVFAERYRLISRKQAVGESLDDFAIDLQDIVEHCGVKVETE
FT                 AVLVQSIFVAGLKNDNTREIMLREGSEELDLAKLLEKAKSIETATQESRKM
FT                 AQHEIVEVNYIDRRGASAGFSRNVVKRSSMGEATHAANRNADLYNHRGSFR
FT                 PSSSTVCYNCYNKGHLSYECTFPKSKKPRNSAPTPPKGAGYKLAYEERINQ
FT                 LTAAMEELKSSLQDDSDLSDKQSADGSEDDSPNLVNNVNSLLLGKLNTTPA
FT                 FVDLTINGKNITLECDTGACATRCSLETYEKNFNKIKLIPIHKHFYVVSGD
FT                 KVSVVGTLPVQVKLREKLLHLTIVVIKSLREFTPLLGRDWLNVIWPDWRES
FT                 FALNSIHTDARKRWIERTVQNLKKDFPKAFDEDLTEPIKDVVVDIKIDENA
FT                 KPFIHKPYTVAFKHREKVSKYLDDLEAKNIITKIEYAEWASPIVVVVKPNK
FT                 TDIIICMDGSKTVNPHITTHHYPLPLIEELITNKSGAKKFVLIDLRGAYQQ
FT                 LVVSDQSKKLLVINTHKGLYAYKRLPFGVKPAATLFQSALDKILFGIPNVQ
FT                 AYIDDILVWAGSDEELLAKVRVVLEKLASHNVKINTDKCQWFVSHVKYLGH
FT                 ILSEAGVSPNPEKVKAIEAVPAPQTKTQLKAFLGMITFYTKFVSKLNLILS
FT                 PLFNLLTKDAVWEWNEDCKLAFENSKKAICSAQILTHFDPSKLITVTCDAS
FT                 DDGIAGVLSHNVEGKERPVFFVSRRLSKAERKYPILHREALAIVFAMEKFY
FT                 KYVIGQQVIIITDHKPLLGVFQSKKNSPMVIANRLQRYISRLSIFEFTIIH
FT                 KPGRENHVADCLSRLPLNEKPSIADIEESKRSAPNFLNFLVEDQAFNLNAK
FT                 LIAEQSKLDPVLVSIIRFIENGWPTYPRQKQFKNYFSKRHDLSIEANCLIF
FT                 RNRVVIPTSLKEFALQLLHANHRGIHKMKLISRQFLYWEGIGTDIENYASS
FT                 CKTCQLNGIDRTPKIYGNWPKATTPFERVHIDFFQNLTAHF"
XX
SQ   Sequence 4464 BP; 1608 A; 813 C; 897 G; 1146 T; 0 other;
     aattggcgac gagggtgaaa atttcgcgat tggatccctt agttactttg tgtgactaag        60
     gaagaagtat taagtacttg cagaagttgt gtacgacgtg cacgtggtgt acagcgtggt       120
     tattattaaa gtaggataat tcgtattgaa aaccagtgac gggtcgtgca agtacccaac       180
     agttaaagtt gagggattag tgcaaaaaat cgctagtgtg gggtcgtgaa agtacctaaa       240
     aaagaaaaaa aaaaacaaaa aagtgatcat gccggatgat aaaaccaacg tgacggcgac       300
     agcaccggtg gttgaaaaaa gaacaaaagg aagatttcct gtgtatttgg cgggtctgaa       360
     cgttaactca tacctgcaaa cggtagagat ttacttcaag cttaatcaaa caccaaatga       420
     tgaaaaagct ttggagttca tcacgagtgt tggccaagaa acagcgaaca gaataatagg       480
     gagttttaag ccagagaaga ttgtgaacaa atcttacgaa caaattattg aaaaatttca       540
     aaaactacat gaagaaaata aaaatgtgtt cgcggaacga tatcgcctca tatctcgcaa       600
     acaagcggtg ggtgaatctt tagatgactt cgcgatagat ctgcaagata tagttgaaca       660
     ttgtggggtg aaagtcgaga ccgaagcggt gttagtgcaa tcgatttttg tggccggttt       720
     aaaaaacgat aacacgcgtg aaatcatgct gcgagaagga agcgaagagc ttgatctggc       780
     aaaattgctg gaaaaagcca aatcgatcga aactgctacg caagaatcgc gtaaaatggc       840
     acaacatgag atagtagaag tgaactacat cgatcgacgt ggtgcaagtg cgggattttc       900
     gcgcaatgtg gtgaagagaa gcagtatggg tgaagcaaca catgctgcta acagaaatgc       960
     agatttatac aaccatcggg gaagctttcg gccaagtagt tcaacagtgt gctacaactg      1020
     ttacaacaaa ggtcatcttt cctacgagtg tacgttcccg aaatcgaaga aacccagaaa      1080
     cagcgcacca acaccgccaa aaggagcagg atacaaacta gcttacgaag agcggatcaa      1140
     ccagcttaca gcggccatgg aggagctcaa atcgtcgctg caagatgatt cggatctgtc      1200
     cgataagcag tcagcagacg gatcggagga cgattcgccc aatctcgtaa ataatgtaaa      1260
     tagcttgtta ttgggtaagt taaacacaac accagctttt gtggatttga caataaatgg      1320
     taaaaatata acattggaat gtgatacagg tgcctgtgca actagatgct ctctcgaaac      1380
     ctatgaaaaa aatttcaaca aaattaagct cattccgata cacaaacatt tttacgtggt      1440
     gtctggagac aaagtttcag tggttggcac acttccagta caagtaaaat tgagagaaaa      1500
     attattgcac ttaacaatag ttgtgatcaa atctctccga gaatttacac ctctcttggg      1560
     tagggattgg ctaaacgtaa tttggccaga ttggagagaa agctttgctc ttaattccat      1620
     acacacagat gcaagaaaac gatggataga gagaacggtt caaaatttaa aaaaggattt      1680
     cccgaaagct tttgatgaag acttaactga gccgatcaaa gatgtagtag tagatatcaa      1740
     gatcgacgaa aacgctaagc catttataca caaaccatac acagttgcat ttaaacacag      1800
     ggaaaaagtt tccaaatact tggacgatct tgaagctaaa aacataataa ccaaaattga      1860
     atacgcagaa tgggcttctc ctatcgtggt ggtggtgaaa ccaaataaaa cagatataat      1920
     aatttgcatg gatggatcaa aaacagtaaa tcctcacata actactcatc attatccttt      1980
     acctttaatt gaagaactaa taaccaacaa aagtggggcc aagaagtttg tactaattga      2040
     tttacgtgga gcctaccaac aactggttgt gtctgatcaa tcaaaaaagt tgcttgtaat      2100
     taatactcat aaagggttgt acgcatataa acgattgcca tttggtgtta aaccagccgc      2160
     cacactattt caatctgctt tggataaaat tctctttggt attcccaatg tacaagctta      2220
     tatcgatgat atacttgtgt gggcaggttc agatgaagag ttgctcgcaa aggtcagagt      2280
     tgtattagaa aagttagctt cacacaatgt caaaatcaac accgacaaat gccagtggtt      2340
     cgtttcccat gtgaaatatt tgggtcacat tctttcggag gcaggagtat cgccaaatcc      2400
     ggagaaggtg aaagcaattg aggccgtgcc agcgccgcaa acaaaaactc aactaaaggc      2460
     atttcttgga atgataacat tttatactaa atttgtttct aaattaaatc taatactttc      2520
     tcccttgttt aacctattga caaaggatgc ggtatgggaa tggaatgaag actgcaagct      2580
     tgcctttgaa aatagtaaaa aagctatttg tagtgcacaa atactaactc actttgaccc      2640
     ttcaaaactc atcactgtta catgcgacgc aagtgacgac ggtatagcag gggttctcag      2700
     ccacaacgta gagggaaaag aaagaccagt gtttttcgta tcgcgaagat tatctaaagc      2760
     ggagagaaaa tatcctattt tacaccgaga agcactggcc atcgtttttg caatggaaaa      2820
     attttataaa tacgttattg gtcaacaagt cattataata acagatcaca aaccattgtt      2880
     gggggtattc caaagtaaaa agaacagccc aatggtaatt gcaaaccgtt tgcaaaggta      2940
     catttcaaga ctgtcaatat ttgaattcac catcattcac aaaccaggca gagaaaatca      3000
     cgttgcagat tgtctatcaa gactacctct caatgaaaaa cctagtatcg cggatataga      3060
     agaaagtaaa agaagtgcac caaattttct aaattttctt gttgaagatc aagcttttaa      3120
     cttaaatgca aaattaatag ccgaacaatc caaactcgat ccagttctcg tctcaattat      3180
     acgattcata gaaaatggtt ggccaacata cccaagacaa aaacagttta aaaactattt      3240
     ttcgaaaagg cacgacctca gcatagaagc gaattgccta attttcagaa atagggttgt      3300
     cataccaact tctcttaaag aatttgctct tcagttattg catgcgaacc ataggggaat      3360
     tcataaaatg aaacttattt caaggcaatt tctatattgg gaaggaatag gtacagacat      3420
     agagaattat gcttcttctt gcaaaacatg tcagttaaat ggtatagaca gaacgccaaa      3480
     aatatatggt aattggccaa aagcaacaac tccatttgaa cgtgtacaca tagatttttt      3540
     tcaaaattta accgcacatt tttgatattg atagatgcct tttcacggtg gatagaagtc      3600
     aaaagaatga gtaaaactgc agcagaagaa gttgttcaag aattggataa tattttcact      3660
     atttttgggt ttccatccac tattgtcagc gacaacggtc caccattcaa tagtttaaaa      3720
     tttgcacagt tttgcaaggc gagaaatatt gagcatatat tttcaccacc ttatcaccca      3780
     gctagtaatg ggctagctga aagggcagtg caaaccacaa aagcggtgtt ggataaaata      3840
     ataggcgagg gagattctca ttcatcttta cagatcgaca ataaaatacg gacattcata      3900
     catcatcacc accaaactcc gagcacaggt gacaacatca tacccaacga acgaatattt      3960
     gcatttcaac caagaacaca atttgtaaac cttaagttta aacccagcac tttcgctgag      4020
     aatgatgaat tgaaaacaaa aactaatttt aaggtacaag ataaagtgat ctacacacaa      4080
     aaagtaaatg gtagaagatt cagctataac gctacaataa ttaaaccatt atctgaactt      4140
     gtttatctca ttgaggtgga gggctcaagc cgcaaagcgc atgcaaacca acttaagatt      4200
     attccacaaa atcgttttgt gctaaaaaat agtgttgatt cagaaatctc aaaaagcact      4260
     acttcatcct cttgctcaga agtatcagat gaagaagtcg acacgaaaaa taataaccca      4320
     gacttagata tttcaaaaaa gagtgacaaa cgaaagtctc ttcgccgctc aaaaagaaaa      4380
     cgaaactata aacatactaa cctgaatttg gaaacattag ttaagaaaaa gtgaaatcaa      4440
     tatgtctaat cttaaggggg gaga                                             4464
//
ID   Gypsy-18_CQ-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   AAWU01022777;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_CQ_;
KW   Gypsy-18_CQ-I; Gypsy-18_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-174
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 416-416 (2011).
XX
DR   Genome; AAWU01022777; Positions   31717   31890.
XX
SQ   Sequence 174 BP; 61 A; 34 C; 34 G; 45 T; 0 other;
     tgagaggtaa gattaagaga ggatttctag aagagaaacc tcactctcct aagctttgtt        60
     catactccaa agttaccaat aaaccagtct aagcttgaac tcgaaacaag aacgacgtgt       120
     tatttaatat ccgaaagagt cttacaacca cgtgtctaga ttgaggtcgt agca             174
//
ID   Gypsy-18_DAn-I repbase;    DNA;    INV; 4520 BP.
XX
AC   AAPP01019634;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DAn_;
KW   Gypsy-18_DAn-LTR; Gypsy-18_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4520
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019634; Positions  549753  545234.
XX
CC   Positions [1968-2471] - Reverse transcriptase
CC   Positions [3570-4043] - Integrase core
CC   'CCTA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           246..4520
FT                 /product="Gypsy-18_DAn-I_1p"
FT                 /translation="MVKIAELKVDQLRFLLRERNLAAAGSRAELVQRLVEF
FT                 EESEDVEMPQASGNVSQREESVTSQAAAISQLQNEMTELKNMMAQLVSMQR
FT                 PNADDGVNRQQRTEETRRNITGDDIPNLQARNNVRQASVKEIADTLPEFDP
FT                 GDENAISVNQFIDRVNKVVGAYHWDETFLLLAIYTKIKGPAKMWFDSSPVV
FT                 HTTWSDFAQAMREEFGASPDEAEVHFNMTNATRRAKETVKEYCFRMSALGV
FT                 RYSLSEAAVIRYVRAGLQHRELQNSIAAIHFSTMKQLRDAAESYFVNRGRT
FT                 TANKKEFVPKYNNFEMKQDSDVKTAKPKDLKTCFKCGELGHFANSCPSKEQ
FT                 KPRCNKCNTFHAITESCQTAKVMRLGATNQDKLFTRIVRINSKSYNAFIDT
FT                 GSQASIIRQSVADELKADRHECSMRIRGICGGSCILSEEVVIQMDVEGKTI
FT                 DAKLYVADDELLQEDLLLGQDVIVSAQLSLKFTAEDVEVKRAVQQAETIGS
FT                 ERGTHKLLINMQNNQERSQMNQLLSKFEDVFSTGLQGIGKTNIVQAKIDVE
FT                 SNQVVSQPPYRIPEPKKEVVAKMLDELLQQDIIQQSTSEYASPVVLIKKPN
FT                 GSDRLCVDYRRLNKLLKKENFPVPNIEERLQEAKRFKYFTSLDLNSGYYQI
FT                 EIAPESRKFTAFITTDGLYEFKRLPFGLKNAPAIFNRLMAELQKRVHKGDM
FT                 IHYMDDILIGSNNFEEMYAKLERVLTVLRECGLTLNLDKCKLYEQSITFLG
FT                 HQIHDGGISPGEVKTNAISMFPTPTNVTEVRQFLGLTGYFRKFVAGYAIIS
FT                 EPLRMLLRKAQTFKWEQRQEDAFNELKRCLTSRPVITSYRLDAEHELHTDA
FT                 SAVGLAAVLMQNEEGQLKPIAYFSRATSKSEKNYHSYELEALAVVESLERF
FT                 KYYVYGKNVRVVTDCNALKSSMDKKELIPRIARWWLRIQEYDIEIVHRAGI
FT                 LMCHVDALSRAPFENAHEMETACLKISKTLIDEADWLFAIQLQDEKIQNIV
FT                 ADMTSAKQTENDEYVIEQNRLFRKYDKKLLWVVPKQLRYLILHECHDKAGH
FT                 MSTEKTMQRILNLFWFPRMRNFVKSYIKSCIGCALNKIPGGCQEGEYHYDD
FT                 IKPIPFYTVHMDHLGPFPKSSKRNEHILVIVDAFTKFTIVRATKSTATKHV
FT                 LDILQEVTSYLGMPGRIITDRGTAFTSKDFEKYCKSNNIKHILNAVRTPRA
FT                 NGHAERTNRIILSMLLPSNENDKRWDEMLRSIQWSINTMVNSTTKCSPFQL
FT                 LFGYEPRDILKNTLTSVIQNQEQRMMTDVELDTLRADAATRVNDQRAAAKK
FT                 RYDAKHAKPTQYKLGDIVLVENEPSSTGTSRKLEPRYKGPFIVNKVLPNDR
FT                 YLVEDIPQAQRKQRHYKSVYAPDKMKRWCELPEDDQDDDDDSKDDPIYESR
FT                 EDAENLSGKAE"
XX
SQ   Sequence 4520 BP; 1484 A; 884 C; 1113 G; 1039 T; 0 other;
     gttcagaagt gggatactaa tgtgttggtg cagtgttgtg gagatatagt caggaaaatt        60
     ggaacagaat cgtcggcgtg gaaagttggt aatgggtagc agccccagag attactcgat       120
     acttgtgcgt ggcagacgga tttaaagaaa aagccagaca gtataacaca aagggattgt       180
     gtgtatatgg gcgtcgtggt gaaattcgca ttgaaaagaa cattttggaa aaagcattga       240
     ggaaaatggt caagatagca gaactcaagg tggaccagtt gagatttttg ttaagagaac       300
     gaaatcttgc agctgcggga tccagagcag agttagtaca acgactagtt gaatttgagg       360
     aatcagaaga cgtggagatg ccacaagcta gtggaaacgt gagtcaacga gaggaatcgg       420
     tgacgtcgca agcagcagct atttcacaac tgcagaatga aatgaccgag ctgaagaata       480
     tgatggcgca gttggtgagc atgcagaggc caaatgcaga tgatggtgtc aataggcagc       540
     aacgcacaga ggaaaccagg aggaatatca caggagacga tattcctaat ctacaagcca       600
     gaaacaacgt gagacaagcg tcggtaaagg aaatcgcaga cactttgcca gagtttgatc       660
     caggagacga gaacgctata tcagtgaacc aattcatcga tcgtgtcaac aaagtggttg       720
     gtgcgtatca ttgggacgag acgtttttgt tattggcaat ttatacaaag atcaagggac       780
     cagccaagat gtggttcgat tcttcgccag tggtgcacac tacgtggagt gacttcgcgc       840
     aagctatgag ggaggagttt ggagcaagcc cggacgaagc ggaagtgcat ttcaacatga       900
     ctaatgcaac tagacgagca aaagaaacag tgaaggagta ttgtttccgg atgtcagccc       960
     taggagtgcg gtacagtctg agcgaggcag cggttatcag atatgttcgc gcaggattac      1020
     agcaccgaga gttgcaaaac agcattgcag cgatacattt ttcaacaatg aagcagctta      1080
     gagatgcagc cgaatcttat ttcgtaaaca gaggtcggac aacagcaaac aaaaaggagt      1140
     ttgtgcctaa atacaacaat ttcgagatga aacaggacag cgatgtgaag acagcaaagc      1200
     caaaggatct gaagacatgt ttcaagtgtg gagagttggg acactttgcc aattcgtgcc      1260
     caagtaagga gcagaagccc cgctgtaaca aatgcaatac ttttcatgca atcactgaaa      1320
     gttgccaaac tgcaaaggtg atgcgtttag gagcaacaaa tcaagacaag ttattcacca      1380
     gaatagtccg tataaattca aagagctata acgcatttat agatacgggt agccaagcta      1440
     gtatcattcg acagtcagtt gcggatgaat taaaggcaga tcggcatgag tgctctatga      1500
     ggattagagg catatgtgga ggatcgtgta ttctttctga agaagtcgtt atccagatgg      1560
     acgttgaagg gaagaccatt gatgccaagt tatacgtagc agacgacgag cttttgcaag      1620
     aagacctttt gctgggacag gatgtcattg ttagcgccca gttatcctta aagtttacgg      1680
     cagaggacgt cgaagtcaag cgagcggtgc agcaagcaga aactattgga agcgaacgtg      1740
     gtactcataa gcttcttatt aatatgcaaa acaatcagga aagaagtcaa atgaatcagt      1800
     tgttgagcaa gttcgaagat gtcttctcta caggattgca aggaatagga aaaacaaaca      1860
     ttgtccaagc caaaatagat gttgagagca accaagtagt ttcccagcca ccatacagaa      1920
     ttcccgagcc aaagaaggaa gttgtcgcca agatgttgga cgagttattg cagcaggata      1980
     ttatccagca atctacgtca gagtatgcta gccccgtagt actcatcaaa aagccgaacg      2040
     gtagtgaccg actatgtgtt gattaccgcc gtctgaacaa gctgttaaag aaggagaatt      2100
     ttccggtccc gaatatagaa gagcgtcttc aagaggcgaa acgatttaag tatttcacct      2160
     cactggattt aaatagcgga tattaccaaa ttgagatagc acctgaaagc cgaaagttta      2220
     ccgcattcat caccacggat ggactttatg agtttaagcg actcccgttt gggctaaaga      2280
     atgccccagc cattttcaat cgtctcatgg cagaactaca aaagcgagtg cataaaggag      2340
     atatgattca ctacatggac gacattctta ttggtagcaa taatttcgag gagatgtatg      2400
     ccaagctaga gagagtcctt acagtattgc gagagtgtgg actaactctc aatctggata      2460
     aatgtaagtt gtacgagcag tctattacgt ttctaggaca tcaaattcac gatggaggta      2520
     tcagcccagg agaagtaaag acgaatgcca tttccatgtt ccccacaccg accaatgtca      2580
     ccgaagtacg tcagttttta ggattgacag gatatttccg aaaatttgtc gccggatacg      2640
     ctattatatc agagccgttg cgtatgctgt tgcgaaaagc acaaacattc aaatgggagc      2700
     agcgccaaga ggatgcgttt aacgaattga aaagatgcct aacgtcaaga cctgttatca      2760
     caagttatcg cctagatgct gaacatgaat tacacacaga tgccagtgct gtgggtttgg      2820
     ccgccgtact gatgcaaaat gaagagggtc aactaaagcc aattgcttat tttagtcgtg      2880
     caacgtctaa gtctgagaaa aattatcaca gttatgagct ggaagctcta gccgtcgttg      2940
     agtcgttgga gcgatttaag tattatgtct acggtaaaaa tgttcgagta gttaccgatt      3000
     gtaatgccct gaaatcttca atggataaga aggaacttat accccgaatt gcacgatggt      3060
     ggttaaggat tcaagaatat gacatcgaga ttgtacatcg agctggaata ctgatgtgcc      3120
     acgttgatgc tttaagccga gcaccttttg aaaacgcaca tgaaatggag accgcatgtc      3180
     tgaagatttc caaaaccctg atagacgaag ctgactggtt attcgcgata caactacaag      3240
     atgagaagat ccagaacatc gtagcggata tgacaagtgc gaagcaaacc gagaacgacg      3300
     agtacgtaat agagcaaaat cgcctatttc gaaaatacga caaaaagttg ctatgggttg      3360
     tgccgaaaca gctaagatac cttatactac acgaatgcca cgacaaagca ggacacatga      3420
     gcacagagaa aacaatgcag cgcattctta atttgttttg gtttccccga atgcgaaatt      3480
     tcgtcaagag ctatataaaa tcatgcatag gttgcgcgct aaacaaaata ccaggtggat      3540
     gccaagaagg agagtatcat tacgatgaca ttaagcctat cccattttat acggtacaca      3600
     tggatcacct aggacctttt ccaaagagtt caaagaggaa tgagcatatt ctagttattg      3660
     tcgacgcctt tacgaagttt actatagttc gagcaacaaa aagtactgca actaaacatg      3720
     tcttggatat cctgcaagag gttacgagct acttgggaat gccaggacga attatcactg      3780
     atcgaggtac cgccttcact tcgaaagatt tcgaaaaata ttgcaagtcg aacaacataa      3840
     agcacatcct taacgctgta aggacaccga gagccaacgg tcatgcagag aggacgaaca      3900
     gaattatttt gtccatgcta ctgccttcga atgaaaacga taagcgatgg gacgaaatgc      3960
     tacgatctat ccagtggagc attaatacca tggtaaatag cacaactaaa tgttccccat      4020
     ttcagcttct ctttggatac gagccaagag atattttaaa gaacaccctg accagcgtga      4080
     tccagaatca agagcagagg atgatgacag atgtcgagtt ggatacgcta cgagcagacg      4140
     ctgcaactag agtcaacgat caaagagctg cagccaagaa acggtacgac gcaaaacacg      4200
     ctaagcccac acaatataag ctaggagata ttgtactggt ggaaaacgag ccaagcagca      4260
     cgggtacttc cagaaaattg gagcctcgct ataaaggacc ttttattgtc aacaaggtgt      4320
     tgccgaacga ccgatatcta gtggaagata tcccccaggc ccaacgaaag cagagacatt      4380
     ataagtcggt ttatgcaccc gacaagatga agcgctggtg tgaacttcca gaagatgacc      4440
     aagatgacga cgatgactcg aaggacgacc ccatctacga atctcgcgag gacgctgaga      4500
     atttatcagg aaaggccgaa                                                  4520
//
ID   Gypsy-18_DAn-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   AAPP01019634;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DAn_;
KW   Gypsy-18_DAn-LTR; Gypsy-18_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-217
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019634; Positions  545233  545017.
XX
SQ   Sequence 217 BP; 94 A; 40 C; 35 G; 48 T; 0 other;
     tgtaaacagc taagcagcaa tcaaatgtag gataacagaa tctgttatcg aatagtagag        60
     gagactgtta ataaagctgc gagtagttag tcttaagcaa caaatagagc agaaacgacg       120
     cataagttaa gaccaaaaga caattatgta aaactatatc taacatatcc acacattaat       180
     aaacctatga gaccactaag aaaaccatcc tctcaca                                217
//
ID   Gypsy-18_DAzt-I repbase;    DNA;    INV; 5545 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-18_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5545
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 799-799 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. It includes a array of satellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           1137..2609
FT                 /product="Gypsy-18_DAzt-I_1p"
FT                 /note="gag."
FT                 /translation="MGTRWLNSRRKDELQSLAKEFGLGEAGTVEELRGRIS
FT                 NFIGRGGHSEEVQARLDELNSHFGNIPSPREHRSPATSPGPATRAKREEDM
FT                 DEQKLRLTVPELNTQDSEANTSATEDNPPHQGVQRLLLPELPSTSRGFSTG
FT                 PRDHPAPPLLGYDQARPLSGQSLGAIPEASHEHRRPVSSSIGPRTGVTELS
FT                 FNGDPDQSRGLSVQRAFRPGCGEISYSLLADKLRKWGLTFNGHTDPLAFIE
FT                 RLEERVESYGGSPEQLPRAISGLLTGKAEGWFRTFQMQGQSWTDFRKEFLD
FT                 FFLPPRYFQRLEDTIRSREQRPRESFRDYMIELRLMMQRAKFTREQELDRI
FT                 YENLRPEYQMYTRRQDFNTLTELTQLVAAYETARDRESPRSSGTGPTRGPR
FT                 AAYSTNETIAPRGITNGTSNGVARVITQEEERPIDVSRACRNCGEAGHFAQ
FT                 ACANRQKLFCWDCGRRNIRTIYCCRKTESGNGSSLRPVGTRTETHT"
FT   CDS           1949..5542
FT                 /product="Gypsy-18_DAzt-I_2p"
FT                 /note="retropepsin and reverse transcriptase."
FT                 /translation="MVQDLPDAGPELDGFPQGISGLLLTTQILSALGRHHP
FT                 EPGTEAPRILPGLHDRVTTDDAACQVHAGAGTGPNLRESPTGVSNVHQTTG
FT                 LQYPNRAHTARRSVRDCTRPRVPSQQRNRTNPRTPRSVLHQRDHSTARHHK
FT                 RDIEWGCASNNSRGRTANRCEPGMPELWGGRTLCSSMRQSAEAFLLGLWSP
FT                 KYQDHLLLQEDRVGKRIESPPSRDADGDTHLGPEVPHPLSMVGGRIAALVT
FT                 INGRAFSATLDTGATRSFVSQRVAEELGTAENRREVRTRISLADGTRKDIT
FT                 QAISTRVRLDQQEAQISLLVLSTVLDDVILGLDFLCGIRASIHCGRAYLQL
FT                 KLRQPPGSPPTGGASLQPRTVTFADPPVQTSCPTAAANHPKTTTAPDARPN
FT                 PRKRRRSQQRETSRHQDIPTSTTENTVAPRGSTIVAVNSSNQTDQQDNPGT
FT                 LASTSTLASLTKTSPADQQNSADTLASTSTHALLTKESPTPPRHRAGTLAS
FT                 TSTLASLTKTSPADQQNSADTLASTSTHALLTKESPTPPRHRAGTLASTST
FT                 LASLTKTSPADQQNSADTLASTSTHALLTKESPTQPRHRAGTLASTSTLAS
FT                 LTKTSPADQQNSADTLASTSTHALLTKESPTPPRHRAGTLASTSTLASLTK
FT                 TSPADQQNSADTLASTSTHALLTKESPTQPRHRAGTLASTSTLASLTKTSP
FT                 ADQQNSADTLASTSTHALLTKESPTPPRHRAGTLASTSTLASLTKTSPADQ
FT                 QNSADTLASTSTHALLTKESPTPPRHRAGTLASTSTLASLTKTIPADQQSN
FT                 ADTWALTKERAFLTQKPTQCTQRKASTPSPDGTQLAPRASTEPRSSQLNRK
FT                 TRTLAQRSYDLEPLADAVTARERNPFRTPRANTAQQKNPFRTNDQYHNSGN
FT                 LAAVTAKELEELSPWQPDPVSTQPPTPEAEKFLEEELAKFEGLNGISQIAE
FT                 HTITMRDDKPVKQRYFPKNPAMQKIIDAQVTELLRDGRIEPSRSPHSAPIV
FT                 LVGKKTGEMRMCVDYRQLNARSVPDAYPLPRITHILERLRNASYISTLDLK
FT                 NGYWQIPVAEGSREATAFTVPGRGLFHWKVMPFGLHSAPATFQRALDSVIG
FT                 PDMEPYAFAYLDDIIVIGSSLEEHIENLREVFRRLREANLRLNRNKCSFFR
FT                 KSLVYLGPGTSGSTKVALLGYQSTEAARCSFPSVPEVGR"
XX
SQ   Sequence 5545 BP; 1476 A; 1716 C; 1508 G; 845 T; 0 other;
     gatggcgccc gagcagggac ttgagagcgg atcggggaag ggatagttcg gggtgcagta        60
     cagtaaccag tgtagcagaa tagcgggatg acgcggccac gaggttgtac aatcaaaccc       120
     atcgtggaca gccagcagca gcagcgggag cagaaaataa aaggcgtagg aaaacaggag       180
     cagagcacca atcttattct ctggttcaaa tacagccgag gctggtcttt ccccctccct       240
     cctagcaaac aaccgcaagc gattacaacg ccacgccatc gcctcaccac gtgcgagaga       300
     gacggcacgt gacgccagga gaagagcttg gcccatccac gtggcttgcg cggccagaca       360
     gcagcagcgg tactatcgga gagagagggc gtccaccgcg atacagcggc aaggcgaaca       420
     acagccgctc gccgcggtac gcgacgatca agcacgagtc gcgtgtctct cggcggtcga       480
     gagagggcgc gcaacattcc taacgcgggc agcggcgaca cgacgacaca gcgacacgac       540
     gagacaacga caaggtggca gcagaggaga gagagtgcct cgctccgcag cagagccctc       600
     ggagaaaagc ttggcggcag caataaaagg aggagtccga gcccaggaaa aataatcaag       660
     tccgagccct cgaccgggaa gcatcacgcc caagaccagg aaaagactaa gaagaatccc       720
     taacgctgag aaacatatcc tttcgaagga tccctgaatc cggtgctacg ccgcgtgtcc       780
     aaccactgca tatcctttcg aaggatccct gatcccagtg ccgcgcctcg tacactaacg       840
     ctgagaaacc tatcctttcg aaggatccct gaatccagtg ccgcgccgcg cgtccaacca       900
     ttgcatatcc tttcgaagga tccctgattc cagtgccgcg cctcgtacac taacgctgat       960
     cctgacccag gatccctgaa tccagtggca caccgcatac cttcgctgag gatccttgac      1020
     cccggtgccg cgccgcgtgt ccggtcactc cacgggccac gtaccttcat caagagtcac      1080
     cgatccttcg gggccatacc acgcgctaag agcaaacgca gcgaacccgc aacacgatgg      1140
     gcacccgctg gttgaactcc cgtagaaagg acgaactgca gagcttggcc aaggagttcg      1200
     gactcggaga agccggtacc gtagaggagc tacgcggccg gatctccaat tttattggac      1260
     gaggcggaca ctccgaggag gtacaggcga ggctggacga attgaactcg catttcggga      1320
     acattccgag tcccagggag catcgaagcc cagccacatc accaggtcct gcgactcgag      1380
     caaagaggga ggaagacatg gatgagcaga aacttcgact gacagtgccg gagctaaaca      1440
     cccaggattc cgaggccaac acgtcggcca cagaagataa tcctccgcat caaggagtcc      1500
     aacgactgct gctaccggaa cttcccagta cgagccgagg attcagcacc ggaccaaggg      1560
     accacccggc cccaccgtta ttgggctacg accaagcacg tcccctttca ggccagtctc      1620
     ttggggccat acccgaggca agccacgagc acagacgacc cgtgtccagt agcatcggac      1680
     cccggacagg ggtgacggag ctgtcattca acggtgatcc cgaccaatca cgtggccttt      1740
     cggtccaacg agcatttcgc ccaggatgtg gagagatatc gtactccctc ctggcagaca      1800
     agctcaggaa gtggggactc accttcaatg gtcacacgga cccactggca ttcatcgaac      1860
     gactggagga gcgagtcgaa tcctacggcg ggagcccaga acagctgccg cgggctatct      1920
     cgggcctcct gacaggtaaa gctgaaggat ggttcaggac cttccagatg cagggccaga      1980
     gttggacgga tttccgcaag gaatttctgg acttcttctt accacccaga tactttcagc      2040
     gcttggaaga caccatccgg agccgggaac agaggccccg agaatccttc cgggactaca      2100
     tgatagagtt acgactgatg atgcagcgtg ccaagttcac gcgggagcag gaactggacc      2160
     gaatctacga gaatctccga ccggagtatc aaatgtacac cagacgacag gacttcaata      2220
     ccctaacaga gctcacacag ctcgtcgcag cgtacgagac tgcacgagac cgcgagtccc      2280
     ctcgcagcag cggaaccgga ccaacccgcg gaccccgcgc agcgtactcc accaacgaga      2340
     ccatagcacc gcgaggcatc acaaacggga catcgaatgg ggttgcgcga gtaataactc      2400
     aagaggaaga acggccaatc gatgtgagcc gggcatgccg gaactgtggg gaggcaggac      2460
     actttgctca agcatgcgcc aatcggcaga agcttttctg ttgggattgt ggtcgccgaa      2520
     atatcaggac catctactgc tgcaggaaga ccgagtcggg aaacggatcg agtctccgcc      2580
     cagtagggac gcggacggag acacacactt aggacccgaa gtccctcacc ctttgagtat      2640
     ggtcggagga aggatcgcag ctttggtgac cataaatggg agagccttct cggcgactct      2700
     tgacactgga gcaacgcggt cattcgtcag tcaaagggtg gccgaagagt tgggaacggc      2760
     tgaaaatcga cgagaagtaa ggaccaggat cagtctggcg gacggaactc ggaaggacat      2820
     aacccaggcg atatcaacta gggtgcgcct tgaccaacag gaggcccaga tatctctgct      2880
     agttctgtca acagtgttgg acgatgtcat cctaggtctg gatttccttt gcggtatccg      2940
     cgctagcatc cactgtggaa gggcatacct acaactaaag ctacgtcagc ctcccggctc      3000
     cccaccaaca ggaggcgcat cactacaacc gcgcacagtc acattcgccg atccccccgt      3060
     ccagacaagt tgtcccacag ctgccgcgaa tcacccgaag acgaccacag cacccgacgc      3120
     acgaccaaat ccccggaaac gaagacgcag tcaacaacgc gagacttcga ggcaccaaga      3180
     catacccaca agtacgaccg aaaacacggt ggctccaagg gggtcgacca tagttgcggt      3240
     caatagttcg aaccaaacgg accaacagga caacccagga accttggcgt cgacgagcac      3300
     actcgcctcg ttgaccaaga cgtctcctgc ggatcagcag aacagcgcgg acaccttggc      3360
     gtcgacaagc acacacgcct tgttgaccaa ggagtcccca acaccgccac gacacagggc      3420
     aggaaccttg gcgtcgacga gcacactcgc ctcgttgacc aagacgtctc ctgcggatca      3480
     gcagaacagc gcggacacct tggcgtcgac aagcacacac gccttgttga ccaaggagtc      3540
     cccaacaccg ccacgacaca gggcaggaac cttggcgtcg acgagcacac tcgcctcgtt      3600
     gaccaagacg tctcctgcgg atcagcagaa cagcgcggac accttggcgt cgacaagcac      3660
     acacgccttg ttgaccaagg agtccccaac acagccacga cacagggcag gaaccttggc      3720
     gtcgacgagc acactcgcct cgttgaccaa gacgtctcct gcggatcagc agaacagcgc      3780
     ggacaccttg gcgtcgacaa gcacacacgc cttgttgacc aaggagtccc caacaccgcc      3840
     acgacacagg gcaggaacct tggcgtcgac gagcacactc gcctcgttga ccaagacgtc      3900
     tcctgcggat cagcagaaca gcgcggacac cttggcgtcg acaagcacac acgccttgtt      3960
     gaccaaggag tccccaacac agccacgaca cagggcagga accttggcgt cgacgagcac      4020
     actcgcctcg ttgaccaaga cgtctcctgc ggatcagcag aacagcgcgg acaccttggc      4080
     gtcgacaagc acacacgcct tgttgaccaa ggagtcccca acaccgccac gacacagggc      4140
     aggaaccttg gcgtcgacga gcacactcgc ctcgttgacc aagacgtctc ctgcggatca      4200
     gcagaacagc gcggacacct tggcgtcgac aagcacacac gccttgttga ccaaggagtc      4260
     cccaacaccg ccacgacaca gggcaggaac cttggcgtcg acgagcacac tcgcctcgtt      4320
     gaccaagacg attccagccg accagcagag caacgcggac acttgggcat taacgaaaga      4380
     acgcgccttt ttgacgcaga agcccaccca atgcacgcaa cggaaagcct caacgccaag      4440
     ccccgacggc acgcaactag cgcccagagc atccacagag ccccggtcaa gccaactcaa      4500
     ccgcaaaacc aggactctgg cacaacgaag ctacgaccta gaacccctag ccgacgcagt      4560
     gaccgcacgg gaacggaacc ctttccgtac accacgcgca aacacagcac aacagaagaa      4620
     cccctttcga acgaacgacc agtatcacaa cagtggcaat ctagcagctg tcaccgccaa      4680
     ggaactagag gaactctcgc catggcaacc agatccagtc tccacgcagc cccccacgcc      4740
     tgaagcagaa aaattcctgg aggaggaact ggcaaagttt gaagggctga acgggatatc      4800
     gcaaattgcc gagcacacaa ttaccatgcg ggacgacaag cccgtgaaac aacgatactt      4860
     cccgaaaaat ccagccatgc agaaaatcat cgatgcgcaa gtgacggaac tacttcgaga      4920
     cggtcgaatc gagccatcca ggagccccca cagtgcccca atcgtactgg tgggaaagaa      4980
     gacgggagag atgcgtatgt gcgtggacta tcgccaatta aacgcccgat ccgtgccaga      5040
     cgcatacccc ctaccacgca tcacccacat cctggagagg ctccggaacg caagttatat      5100
     ttcaacgttg gatctgaaga acggatattg gcagatcccc gtcgccgagg gtagcaggga      5160
     agccaccgca ttcaccgtgc cgggcagagg gctcttccac tggaaggtca tgccatttgg      5220
     cctgcactca gcaccagcga cctttcaacg ggccttagac agtgtcatcg ggcccgacat      5280
     ggaaccatac gccttcgcat atttggacga tatcatcgtc atcgggtcaa gcctagagga      5340
     acacatagag aacttgcgag aagtcttccg aaggttgcga gaggcaaatc ttagactgaa      5400
     ccgaaacaaa tgcagtttct tcaggaagag cctggtttac ctcggacccg gcacatcggg      5460
     gagcacgaag gtcgcgcttt tagggtatca atcaaccgag gcggccaggt gttcatttcc      5520
     gtccgtcccc gaagtaggaa gggag                                            5545
//
ID   Gypsy-18_DAzt-LTR repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1630
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 822-822 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1630 BP; 446 A; 484 C; 437 G; 263 T; 0 other;
     tgtgaagggg cacagcccct cacaacacaa ctgaagttcc ttttgttaat tatgaagttt        60
     attttgtttt attactgatt atcttgttcc taattttgtt ttcctagtac gtagttatga       120
     caatagggta agaaatagat ggtaagcaca caaacaccaa acgcgtgtta tttttacggg       180
     gatcgtgacc ggggggatac ggttcacggg aaccgtatca agcatcactg acgggaacca       240
     gcgagaacca taccaagcat cactgacggg aaccagcaag aaccatacca agcatcactg       300
     acgggaacca gcaacagccg agagcagcag agaaggcaga taccagcaga gagagcatca       360
     cagcgccgac accgcataac ggaaagcaaa agccgcagcc gagaccagca gagagagcat       420
     cacagcgccg acaccgcata acggaaagca aaagccgcag ccgagaacag cagagagagc       480
     agataccagc agagagatca ccccagcgcc gacaccgcat aacggtaaac gaaagccgca       540
     gccgagagcg gcagagagag agcaggtacc agccgagaga tcaccacagc cccgaccccg       600
     aataacggaa acaggagcgg cagccgagaa tggggaatga gcggagagcg agtgtgagtc       660
     agaagcgaca aaatgcgggc agaggctacg ggcagaggct cgggcctgga ggcctggagt       720
     gggcaaccga aaaatggatt cgggagtcga gatctggcag tgaacgggag cagaagagat       780
     cgccaggagc tgaccaacga aatcgggcgg cacgacgatg gcaggaggag cagggtaagc       840
     tggtcttgcg taagcgagct agggagtaga aaggtgcggc agggacctag agtagcaaac       900
     catttccgta gttagacgag gcagacaata aaagaaatct ttacaaagaa aaaaacccac       960
     cgtagttcca atatcgacat attaaccagt agtatatcct aacccgaaag cccgcgactt      1020
     ggtactcccc ttgcatgccg ggaactcagt cagagaagtt gtacgcggat gccacgactc      1080
     cccctgcctg agattcccct cccgtagcaa tacctccccg taacctattc ctcatccttg      1140
     gggaccactg gttggcgaac gtgtacgcgg acgccacgcg atttgccaaa ccagtggttt      1200
     cccccttccc gttgtgtatc tcccaaacgc cttttccttc ccttcccttc acctaaagac      1260
     ccgccatcca caccacacgc acctgaccgg ggccggcgta ggcctgcacc gcactcgcta      1320
     gccacgagtg gggggtacca ctgcccacgt gctcttgcgc cccattcact caccatgagg      1380
     ggagggtgcc accgccggca gcctgcaccc cataccccac cgaccacacc acgcaccacg      1440
     cgcccctcgc ctcgatcgcg gcgggctctt tccccccgca cgcggccggc cgcgccacgc      1500
     gtgccaacgc tcgcgtcccc ccgatccctc tctgtggtcc ccgaaataca aattattctg      1560
     tatagggacc gggccctgga cagactgaga agctgtacct cggcctgaga caggaacatc      1620
     cttacagatg                                                             1630
//
ID   Gypsy-18_DBp-I repbase;    DNA;    INV; 4563 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4563
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 684-684 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1594..4539
FT                 /product="Gypsy-18_DBp-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="LRNPRKNCIIXTFQKLPSSIQRTTHKICTQYSDVFGL
FT                 ETESITTNNFYKQKLRLTDDEPVYIKNYRNPHSQQDEIQKHVQKLIKDKIV
FT                 EPSVSPYNSPLLLVPKKSLPNSENKKWRLVIDYRQINKKLLSDKFPLPRID
FT                 DILDQLGRAKYFSCLDLMSGFHQIELEKSSRDITSFSTNNGSYRFTRLPFG
FT                 LKIAPNSFQRMMTIAFSGLEPSQAFLYMDDLIVIGCSENHMLKNLTDVFEK
FT                 CRQHNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDA
FT                 DSARRFIAFCNYYRRFIKNFAEYSRHITRLCRKNVKFEWTTECQNAFEHFK
FT                 SALINPTLLQYPDFSKEFCIITDASKYACGAVLTQNKNGLQLPVAYASRSF
FT                 TKGESNKSTTEQELAAIHWAIIHFRPYIYGRHFTVKTDHRALIYLFSMVNP
FT                 SSKLTRMRLELEEYNFTVEYLKGKDNYVADALSRITITDLKNIQLNILKVT
FT                 TRNQSRQKSCAGKEQKELHKQSIEKASEPNVYEVINNDEVRKVVTLHVNNK
FT                 MCLFKRGRKITARYDVSDLYTNGTLDLGQFFQRLEKQAGIHKISQLKVAPW
FT                 ENIFEHVSIDNFKNMGNYILKSLRVALLNPVTVIKNNKDKEAILSTFHDDP
FT                 IQGGHTGITKTLAKVQRHYYWKNMSKDIKEYIKKCPKCQKSKTTKHTKTPL
FT                 TITETPQRAFDRVIVDTIGPLPKSDNGNEYAVTLICDLTKYLVAIPIPDKS
FT                 ANTVAKAIFENFILKYGPMKTFITDMGTEYKNSIIGNLCKNLNIENITSTA
FT                 HHHQTVGTVERSHRTLNEFIRSYISVDKTDWDVWLQYFAYCFNTTPSMAHD
FT                 YCPYELVFGKTSNLSKHFNSVDIIEPLYNIEDYAKESKFRLEQAFKRARLM
FT                 LEAHKLKQKIIYDKTSLDFDLKIGDQVLLKNETGHKLDFKYTGPYKVEQIG
FT                 DRDNITISNNKNKKQLVHKDRLKLFIS"
XX
SQ   Sequence 4563 BP; 1794 A; 852 C; 745 G; 1158 T; 14 other;
     tcagatttag acaacagcat ttwggaagta aaacctacca caatggctga cgawacaatt        60
     gcccmaaggk catacattag ggaaatatcg agtgccatcc cagaatttaa cgggcaaagg       120
     ttacacctkc aaagattcat aacagctttg aggttagtca acctaacgaa aggcacatts       180
     gaagctttgg ctgtagaagt wattamatcc aaaatagttg gatcmacttt gtacagagtc       240
     caaagcgaaa cggctataga akcaataatt aaaaagctgc aagatactaw agtcggagaa       300
     acgtccgacg tggttagagc caaaatggca aaaacmggcc agaaaggaaa aacggcagaa       360
     aagtktacaa cgagatagac aacctacgga agcttctaga agcttcgtat attgacgaag       420
     gtctatcggc cgagcacgct gacaaattca gcaccaaaga agcaatctcc acaatggtta       480
     aaaattgtga gcatggccga cttaaaacaa tattggaagc aagtaatttc gcaacaatga       540
     atgaagccgt cacgaagtac atacaatgca gtactgaaat gacaggcaat gcaaattcca       600
     tattatacgc ctatcgagga aactatcgcg gtaacaatta caaaaacaat tatcgcggta       660
     gaggtaataa tcgaggtaga tataacaata acgggtatat ccaaaataat ggttactacg       720
     gaaacaataa ctataataac aataactaca tgaacaacaa caaccgtggt gaaaacaatc       780
     gcggcggaca cggccgtggt ggaaaccata ataataatgg caataatagc cacaaccatg       840
     gcaataacaa ccataacaat aacgtcaggg tagtccatac agattcggga aactcccaga       900
     cgcctttagg tacacaacag taagaaacac caaagttcac actataaatc tcagtcaaag       960
     tacatttgtt agtttcacaa acgtagcaac aggaaaagaa ttagtttttc tactagatac      1020
     aggtgcagaa attccatatt aaaggaaaat tctgatgctt ttcaaaacat caaaagtaat      1080
     caaatgataa acatacaggg tataagtcaa gaagttacca aatcaaaagg tttaacttct      1140
     attgaaattc aaacttcaaa atacataatt ccacatgatt tccatatcgt aaattttcag      1200
     ttcgctattc catgcgatgg aatactagga atcgatttta ttaaaagata caactgtcaa      1260
     ttagacttca agccgtctga agactggctt ataataagac caaataacct ccaatatcct      1320
     atttatgttc caataacata tagctctggc aataactctc taattctgcc agcaagatcc      1380
     caagtcgtcc gaaaaattga aatgaattca gaaaatgaca gtgtattaat tccgaatcaa      1440
     gaagttcagc atggtatcta tatagcaaat accatagcaa ccacccagaa tggcatatat      1500
     aagactatta aataccacag ataaggatca agtagtttat attaaaaata ttcagcatga      1560
     accactttca aactacgaag tagtacaaac tgacttagaa acccgagaaa aaattgtatt      1620
     atccmaactt tccaaaaact tccctcctca attcaacgaa caactcacaa aatatgcacc      1680
     cagtatagtg atgtgttcgg actagaaacc gaatcaatca ctaccaataa tttctataaa      1740
     caaaaactga gattaactga tgatgaaccc gtatatataa aaaattatag aaatcctcat      1800
     agtcaacaag acgaaattca aaagcatgtc caaaaactca ttaaagataa aatagtggaa      1860
     ccctctgtat caccatataa tagcccacta ttgttagtac caaaaaagtc acttccaaat      1920
     tcggaaaata aaaaatggcg attagtaatt gactatcgtc aaattaataa aaaactcttg      1980
     tctgataaat ttccgctccc tagaatcgac gatattttgg atcaactagg tagagcaaaa      2040
     tatttctcat gccttgactt aatgtcgggt tttcaccaaa ttgaactcga aaaaagttca      2100
     cgcgatataa catccttttc aacaaacaat ggttcatatc gcttcacgcg attaccattc      2160
     ggtttaaaaa tagcgccaaa ctcttttcag agaatgatga ctatagcttt ctctggatta      2220
     gaaccttcgc aagcattcct ttatatggat gacttaatag tcataggttg ctctgaaaat      2280
     cacatgctca aaaacttaac tgatgttttc gagaaatgta ggcagcacaa cctaaagtta      2340
     catccagaaa aatgttcatt ttttatgcat gaagtcactt tcctaggaca taaatgcaca      2400
     gataaaggaa ttttgcccga cgacaaaaaa tacgacgtca ttcaaaatta cccagtccca      2460
     catgatgcgg acagcgctag aagattcatc gcattttgca attattacag acgtttcata      2520
     aagaattttg cagaatactc ccgtcacata acaagattat gtaggaaaaa tgtaaaattc      2580
     gaatggacaa cagaatgtca aaacgccttc gaacatttta aatcagcatt aataaatcca      2640
     actctgttgc aatacccaga ttttagcaaa gaattttgca taatcacaga tgctagcaaa      2700
     tacgcttgtg gagcagtcct aactcaaaac aaaaatggac ttcagcttcc ggttgcatac      2760
     gcatcaagat cctttacgaa aggtgaaagc aacaagagca ctacagaaca agaactagca      2820
     gctattcatt gggcaataat acacttcaga ccatatattt atggtagaca tttcactgtc      2880
     aaaacagacc acagagcact tatttactta ttttcaatgg taaatcccag ttccaaacta      2940
     acaagaatga gacttgaatt agaggaatat aattttacgg tagagtacct aaagggcaaa      3000
     gataattatg tagccgatgc gctctccaga ataacaatca cagacttaaa aaacatacaa      3060
     ttaaatattc tgaaagtcac taccagaaac caaagtagac aaaaatcctg cgcaggaaaa      3120
     gaacaaaaag aattgcataa gcaatctatt gaaaaagctt cagagcccaa cgtatatgaa      3180
     gtcatcaata atgatgaagt acgtaaagta gtgaccttgc atgtaaataa taagatgtgt      3240
     ttatttaagc gcggaaggaa aattacagca agatatgatg ttagcgattt gtatactaat      3300
     ggaacccttg acttaggtca gttcttccaa aggcttgaaa agcaggccgg tattcacaaa      3360
     atcagccaac tcaaagtggc accgtgggaa aatatctttg aacatgtttc aattgataat      3420
     tttaaaaata tgggcaatta tatactgaaa tcattaagag tagcgctact caacccggtg      3480
     accgtaataa aaaataataa agataaagaa gctatattgt ctacattcca tgatgatcct      3540
     atacaaggtg gtcatacagg cattacaaaa accttggcca aggtccagag acactattac      3600
     tggaaaaata tgtccaaaga cataaaagag tacataaaga aatgtcctaa atgccaaaag      3660
     tctaaaacga ctaaacacac taagacccca ttaaccataa ccgaaactcc gcaaagagct      3720
     ttcgatagag taattgtgga tacgattggt ccactaccca aatctgataa tggaaacgaa      3780
     tacgcagtaa cactcatctg cgatttaact aaatacttag tagcaatacc aataccagat      3840
     aaaagtgcaa atacagtagc aaaagctata tttgaaaatt ttattctaaa gtacggtcca      3900
     atgaagacgt tcattacgga catgggaacg gaatataaaa attcaattat tgggaattta      3960
     tgtaaaaatt taaatattga aaacataact tcgactgcac atcatcacca gactgtaggt      4020
     accgtggagc gaagccacag aacactcaat gagtttatcc gttcatacat ctcagttgac      4080
     aaaacggatt gggacgtatg gctacaatac ttcgcctatt gtttcaatac aacaccctct      4140
     atggcacatg actattgtcc atatgaatta gtttttggta aaacgtcaaa tctatcaaaa      4200
     cattttaata gcgtagatat aatagaaccc ctttacaata tagaagatta cgctaaggaa      4260
     tcaaaattta gattagagca ggcatttaag agagctagac taatgctaga agctcataag      4320
     ctaaaacaaa aaattattta cgacaaaact agtttggatt ttgatttaaa aataggagat      4380
     caggttttat tgaaaaatga aacaggacat aaactagatt ttaaatatac aggtccttat      4440
     aaggtagaac aaataggaga tagagataac ataacaatat caaataataa gaataaaaaa      4500
     caactagtac acaaagatag attaaaactt tttatttcat aatcaatttt aatttcataa      4560
     ata                                                                    4563
//
ID   Gypsy-18_DEl-I repbase;    DNA;    INV; 7168 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7168
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 453-453 (2012).
XX
DR   [1] (Consensus)
XX
CC   LTRs are ~98% identical.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1891..3195
FT                 /product="Gypsy-18_DEl-I_1p"
FT                 /translation="MEWNDLYAKLNEIKTEFDKSYKSLNQNRPIQGSTIKK
FT                 HAEIVVNCFNEARILIHGQRGKLNDDHWSRVSKFLQRLRENLILIKEKFNL
FT                 DISVPTILNTAITVETDEESTLEESTGVDQTEQENFNAEIKEEDLNNLTIP
FT                 AVLLSNADNKTDSDSDSSANITKNNNFEMAQTNIDFINTASKLIPVFDGKA
FT                 ENLTSFIDALHIIESIKGEHESLAVSIIKTKLKGVARNLIGNETTVGEVIA
FT                 KLKSNVKGETVEVLSAKLMNLQQRNKTANQYTSEIEQMTKALESAYITDGL
FT                 TLELARSYSTQHAVKAMTKNCTIDKVKLIMQAGNFNTMNDVISKFVNSCTE
FT                 ATGQPNSVLYYNNYTQRGGNRGRGSYRGNFRGRGNNYGYYNNTNQNNGRGN
FT                 YRGNSRGRGNSSGGYNNNNTNNVRVANDTSGNSEPPLNAQQ"
FT   CDS           3156..6821
FT                 /product="Gypsy-18_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, zinc-finger and integrase."
FT                 /translation="HXGKLRTPFKCSTVEKVTVHTINLSQNIFVSFTHVAT
FT                 GKELVFLVDTGAEISIVKENSDIFQNVQNNNIIDIRGISQEITKSKGLTSI
FT                 EIQTTKYIIPHDFHIVDLHLAVPCDGILGIDFIKKYNCQLDFQPSEDWLII
FT                 RPNNLKFPIYVPIEYSSGNNSILLPARSQVIRKIKLNSKEDSVLIPTQEIE
FT                 HGIYIASTIATTQNAFIRLLNTTNEDKVVSADNLEYESLSNYDVVEGNKEN
FT                 REKSVLSQLSENFPPQFKXQLTNLCKKYNDIFGLESEPISTNNFYKQKLRL
FT                 KDDEPVYIKNYRSPHGQVNEIQKQVGKLITDGIVEPSVSEYNSPLLLVPKK
FT                 SAPGSEEKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCLDL
FT                 MSGFHQIELEKSSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFS
FT                 GLEPSQAFLYMDDLIVIGCSEKHMLKNLTDVFEKCRKYNLKLHPQKCSFFM
FT                 HEVTFLGHKCTDKGILPDDKKYDVILNYPVPHDADSARRFVAFCNYYRRFI
FT                 KNFADYSRHITRLCKKNVPFEWTAECQNAFEYLKTKLMEPTLLQYPDFSKE
FT                 FCIITDASKQACGAVLTQNHNGLQLPIAYASRAFTKGESNKCTTEQELAAI
FT                 HWAILHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSKLTRMRLELEEYNFT
FT                 VEYLKGKDNYVADALSRITIKELQNITGNIHKVTTRYQSRQKSCAGEKEID
FT                 LPRQSIEKASKPNVYGVINNDEVRKVVTLHVKNMLCLFKHGKKVTARYDVS
FT                 DLYTNGVLDLGQFFQRLEKQAGIHQISQLKVAPWENIFEYVSIDNFKEMGN
FT                 KTLKSLRVALLNPVTLINSEKEKEAIMSTYHDEPIQGGHTGISKTLAKVKR
FT                 HYFWKGMTRYITEYIRKCLKCQKAKITTHTKTPLTITETPQTAFDRVIVDT
FT                 IGPLPKSEQGNEYAVTLICDLTKYLVAIPIPNKSAKTIAKAIFEDFILKYG
FT                 PMKTFITDMGTEYKNSIIEDLCKNLNIKNINSTAHHHQTVGTVERSHRTLN
FT                 EFIRSYISVDKTDWDVWLQYFVYCFNTTPSMAHDYCPYELVFGKTPNLPKH
FT                 FNSIDRIEPLYNIEDYAKESKFRLEQAYKRARIMLETNKQKQKDRYDKNSL
FT                 DFELKIGDQVLLKNETGHKLDFKYKYSGPYMVKKIESNNNITILNAKNKTQ
FT                 TVHKDRLKIFIE"
XX
SQ   Sequence 7168 BP; 2829 A; 1320 C; 1208 G; 1808 T; 3 other;
     tggcgaccgt gacatgtgcg cgagtagaaa gtgagactgt ttaatttttg tctctgcgcg        60
     ctgtgtaatt ttcgttattt tggccccaaa atgcgtaaat cggcgagttt ggctaattag       120
     ggccagtgct taacaagtgt ggccgtccaa tgtggacgat gcaagccgat ccctaatcct       180
     cggctgtccg aaattaggct ctccagagcc gccctcgaaa atcgtcaatc gaaatctcca       240
     gccagataaa aaaaaaaatc aacagtaatt agcctgtgcg atgaccagca ccggcgccgc       300
     ctgagcccaa aaggcccgga ctacagaaac aataaaaaaa aaccaacaca aaaaaaaaaa       360
     aaaaaggaag gaagaaaaat aaagaaaatt gaccaggaca tgtgtggaag gaatggcaaa       420
     tccttctgca ccaacgatgg aaactgaagt gtggtaggca gaccgccggc tacaccaacg       480
     aaggaagcat atgagtgcgg aaggcagtcc gccctctgca ccgtcgtggg aggcacctgc       540
     tcctgctgag caaagggacg caccaacatt acaagaggcc ctcgaattgt gtcccaacga       600
     tggacctcgc cccctcacaa tagctgagta cagggcacga caggagtcca gcaaacccat       660
     ccacaaaaga aaaaggagtg gaaaaagggt aaaactcctg caacagagac gattactgaa       720
     ggactacagg gaaatagcaa cgaccccgca ggagaaggaa gcacacgaac gaaacatcaa       780
     agaactggac aaaatacttt gtaaacgagc aaagtaacgc aacaagggct gcatttatgc       840
     caatgcctaa gttgccttta attataaact tctaaacccg agccgatgcg cgaaagcgct       900
     gctcgaaaaa tactaaccac tgttaggcta tatactaaca acatataact gatattggtt       960
     tatatagagc aaaatattgt aaatcagtta tatgaatatt aacacaaaat tttttttctt      1020
     ccaattttca attttaataa aatgaaattt atgcgattat gccagaagac aataatttaa      1080
     tcaatcagwt ttgaataact aaattcctac atttttgttt gatgacgtta ttttgctgag      1140
     tgctcctcag gctttaaaag ctagacagga atatttacgt atatccatat aaaatctctt      1200
     catatgaatg aataacaata gaatagataa attctctgcc gaaaatcata gtaattataa      1260
     taataccata tattggaagt atatctaccc aaaatgggaa tcgtagacgt taagtcagtg      1320
     gactccactg ctaacgttat taataaagta gaaccaaaca atattgacct atattgggta      1380
     catatactct taataataat cattgtcatc ttgagcgcaa attttgttac caaaatatac      1440
     aagttgcaca ataaatgttt aaagaagaag tatttaagta gagcacacga tctagataag      1500
     atataaaaaa aaaatttcaa aagattagag tgttcaattt aatacccccc tattaaaaaa      1560
     aaattttaat tttttttgtt aaattatggc atttaacacg atagaattgg atagctgtct      1620
     tgaggaaata attactaaag atccagaatt tagaatgcgt gcattaaaca ttctccattg      1680
     ccataaaaac ttcattacaa tcactgaatt cgaatataac tatatggaaa agtacaattt      1740
     ggaatttagc cttttgtttg cttacaataa aaaaaaaggg tttaatccta aatactttgc      1800
     catacgtctc agtaaaagag atcgtggatt accattctat actcggtgaa accacgatcc      1860
     ttatggtaaa attacataga taatattgcc atggaatgga acgatttgta cgcgaaattg      1920
     aacgaaataa aaacagagtt cgataaatcc tacaaatccc ttaatcaaaa cagaccaatt      1980
     caagggagca caataaaaaa acacgcagaa atagtagtaa attgttttaa cgaggcgcgc      2040
     atattaatac atgggcaacg aggaaaatta aacgacgacc attggtcaag ggtatcaaaa      2100
     tttttgcaaa ggctcagaga aaacctaata ttgataaaag aaaaattcaa tttagatatc      2160
     tctgtaccta ccattcttaa taccgcaata acagttgaaa ccgatgaaga atcaacattg      2220
     gaagagtcaa ctggtgtaga tcaaacggag caagaaaatt tcaacgcgga aattaaggaa      2280
     gaagatttaa ataatcttac tatcccagcc gttttattat caaacgcgga taataaaaca      2340
     gattcagact cagactcaag cgcaaacata actaagaaca acaacttcga aatggcgcaa      2400
     acaaatatcg acttcattaa cactgcatca aagcttatac cagttttcga tggtaaagca      2460
     gaaaacttaa ccagtttcat tgatgcattg catattatag agtcgataaa aggcgaacac      2520
     gaaagcctag ctgtctctat aataaagaca aaactaaagg gcgtagcaag aaatctaatt      2580
     ggaaacgaaa caacggtagg tgaagtaatt gccaagttaa aaagcaacgt caaaggcgaa      2640
     actgtagagg tattgtcagc aaagctaatg aatctacagc aacgcaataa aactgctaat      2700
     caatacacat cagaaattga gcagatgacg aaggctttag aaagcgcgta cataacagac      2760
     ggcttaacac tagaactagc aagaagttat tccacacagc acgcagtaaa agcaatgact      2820
     aaaaactgca cgattgataa ggtaaaactt atcatgcaag ccggcaactt caacacaatg      2880
     aacgacgtaa tttcaaaatt cgtaaacagt tgcacagaag caactggaca accaaactcg      2940
     gtcctctact acaacaacta tacacagcgc ggcggaaacc gcggacgcgg aagttataga      3000
     ggtaattttc gtggtcgtgg taacaattat ggttactaca acaataccaa ccaaaacaat      3060
     ggtcgcggca actacagagg aaactcaagg ggccgtggca actcgagcgg aggctacaat      3120
     aacaacaata caaacaatgt aagagtagcc aatgacackt cgggaaactc cgaaccccct      3180
     ttaaatgctc aacagtagag aaagtaacgg tccatactat taatctcagt cagaatatat      3240
     tcgtctcatt cacccatgtg gctaccggaa aagaacttgt ctttttggta gacacaggtg      3300
     ccgaaatctc tatagtaaaa gaaaattccg atatatttca aaacgtacaa aataataaca      3360
     taatagatat acggggaata agccaagaaa ttactaaatc caaaggctta acatcaattg      3420
     aaatacagac taccaagtac ataattccac acgattttca tatcgtagac ttacacttag      3480
     ctgtcccttg tgatggcatt ttaggaattg atttcattaa aaaatacaac tgtcaattag      3540
     actttcagcc atctgaagat tggcttataa taagaccaaa caatttaaaa tttccaattt      3600
     atgttccaat agaatacagt tctggcaata actcaattct tctgccagca agatcacaag      3660
     tcattagaaa aataaaatta aattcaaaag aggacagtgt attaattcca actcaagaaa      3720
     ttgagcacgg aatttatata gcaagtacca tagctacaac acaaaatgcc ttcataagac      3780
     tactgaatac aacaaacgaa gataaagtgg tcagcgcgga caatttagaa tatgaatcac      3840
     tgtcgaacta tgatgtagtc gaaggaaaca aagaaaatag agaaaagtct gtattatccc      3900
     aattgtcaga aaatttcccc ccacaattca aattmcaact cacaaattta tgtaaaaaat      3960
     ataatgacat attcggatta gaatccgaac caattagcac aaataatttc tacaaacaaa      4020
     aactgagatt gaaagatgat gaacccgttt acataaaaaa ctatagaagc ccacatggtc      4080
     aggtgaacga aattcaaaag caagtcggaa aattaatcac cgacgggata gtcgaacctt      4140
     cagtatcgga atacaatagc ccattattgc ttgtccctaa aaaatcagct ccaggttccg      4200
     aagaaaaaaa gtggcgatta gtaattgact atcgtcagat taataaaaaa ttactgtccg      4260
     ataaatttcc actccctaga attgatgata ttttagatca actaggtcga gcaaaatact      4320
     tttcatgtct tgatttaatg tcaggatttc accaaataga actcgaaaaa agctcaaggg      4380
     atataacttc cttttcaacg agcaatggct cgtatcgatt cacgcgatta ccttttggct      4440
     taaaaatagc gccaaattca tttcagagaa tgatgactat tgcattctct ggacttgaac      4500
     cttcacaagc attcctttat atggatgact taatagttat aggttgctcc gaaaaacata      4560
     tgcttaaaaa cttaacagac gtttttgaga aatgtaggaa atacaaccta aagttacatc      4620
     cacaaaaatg ttcattcttt atgcatgagg tgacttttct aggtcataag tgcacagata      4680
     aaggaatact tccagacgac aagaaatatg acgtcatact gaattatcca gtcccacacg      4740
     atgcagacag cgcaagacgt ttcgtagcat tctgcaatta ctacagacga ttcataaaaa      4800
     atttcgccga ttattcacgg cacataacac gattatgtaa aaagaatgtt ccttttgaat      4860
     ggacagctga atgccaaaac gcattcgaat atttaaaaac aaaacttatg gaacctactt      4920
     tgctacaata tccagatttt agtaaagaat tttgtataat tactgatgca agtaagcaag      4980
     catgtggagc ggttttaact caaaaccata acggactcca acttcccatt gcatatgcat      5040
     caagagcctt taccaaggga gaaagtaata agtgtactac cgagcaggaa ctagctgcaa      5100
     tacactgggc aatattacat tttcgaccat acatttatgg caaacatttc actatcaaaa      5160
     cagatcacag accgttaaca tacttgttct caatgactaa cccaagttcc aaactgacac      5220
     gtatgaggct agaattagaa gaatacaact tcacagttga atatttaaag ggaaaagaca      5280
     attacgtagc tgatgcgtta tcaagaataa ccatcaaaga actacaaaat ataaccggaa      5340
     atatacataa agtcactaca agataccaaa gtagacagaa atcctgcgca ggagaaaaag      5400
     aaatagactt gcctaggcaa tctatagaaa aagcttcaaa gcccaacgta tacggagtca      5460
     taaacaatga cgaagtacgt aaagtagtga ccttgcacgt aaaaaatatg ctatgtttat      5520
     ttaaacatgg aaaaaaagtt actgcaagat atgatgttag cgatttatat accaatggag      5580
     tccttgactt aggtcagttt ttccaaaggc ttgagaagca agccggtata catcaaatca      5640
     gccaactcaa agtggcaccg tgggaaaata tctttgaata cgtttcaata gataatttca      5700
     aggaaatggg caataaaaca ttaaaatcat tgagagtagc gctactcaac ccggtgaccc      5760
     taataaattc tgaaaaagaa aaagaagcaa ttatgtctac ataccatgat gaaccaattc      5820
     aaggaggtca tactggcatt tctaaaacct tggccaaggt caaaagacat tacttttgga      5880
     aaggtatgac tcgatatatt acagagtaca tacgaaaatg tctaaaatgc caaaaagcga      5940
     aaataaccac gcatacgaag accccattaa ccattacgga aacaccacaa acagctttcg      6000
     acagggtaat cgtggacacg atcggtccac tacctaagtc tgaacaaggg aatgaatacg      6060
     cagttacttt aatctgcgat ttaacaaaat accttgtagc aataccaatt ccaaataaaa      6120
     gtgcaaaaac aatagcaaaa gctatatttg aagattttat tctgaagtac ggtccaatga      6180
     agacgttcat tacggacatg ggaacagaat ataaaaattc aataattgaa gatttatgta      6240
     aaaatttaaa tatcaaaaac ataaattcta ctgcacacca tcaccagact gtcggaacag      6300
     tggagcgaag ccacagaaca cttaacgagt tcatacgctc atacatctca gttgataaaa      6360
     cagattggga tgtatggcta caatacttcg tatactgctt taacacaacc ccctctatgg      6420
     cacatgatta ttgtccatac gaactagttt ttgggaaaac tccaaactta ccaaaacatt      6480
     tcaatagcat agatagaata gaaccattat ataatataga agattatgct aaggaatcta      6540
     aatttagatt agaacaggca tataaaagag ccagaataat gctagaaact aataagcaaa      6600
     aacaaaaaga tagatacgac aaaaatagct tagactttga attaaaaata ggagaccagg      6660
     ttttattaaa aaatgaaact ggccataagc tagactttaa atataaatat tcaggaccat      6720
     atatggtaaa gaagatagaa tccaataata atataactat tttaaatgca aaaaacaaaa      6780
     cacagacagt tcataaggat agattaaaaa tttttataga atagattttg taggatggcc      6840
     attcataaga aaaaaaaaat aaaataacat caaaattttc tcttaaaaaa aaaataattt      6900
     ttattacttt actataataa aaatatagga tacaaataca caaaaattat aataaataat      6960
     aagaaatagt cgcataaatt ttcaaagttt caacttcact aagttttcca atatttacta      7020
     tattaaccaa aaaaaataat aataataata aaaaaaaaaa gtttttacta atttgctaat      7080
     ttttataaac atacatatat atatatactt aacacaataa ttaacaaaat aactccatag      7140
     attacgttat ttttcaaaag gagggaga                                         7168
//
ID   Gypsy-18_DEl-LTR repbase;    DNA;    INV; 476 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-476
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 454-454 (2012).
XX
DR   [1] (Consensus)
XX
CC   Similar to TABOR and TABOR_DA.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 476 BP; 146 A; 113 C; 82 G; 134 T; 1 other;
     tgtagtatgc tcacatatag ggtacacact gtaccgctta tatcactgta acattgtagc        60
     atttgtttat gtccgaatat tcccagcact tcaagtgcaa agcaattcga cccacacaac       120
     aatgttatgc acatcctaaa tgctgagtcg gcatgtctgc atgcgcggcc gaccattcgg       180
     ttaccatgtg agcataacac tctctctctc atgcgcggcc gctgcttgcg ccgcctaaat       240
     acacttacgt atacattaac atatatattg agatacataa gcgttggccg cggcgctgct       300
     cgtgcagcta tatgaattgt aagccaagcc aacattaktc ttaagtgagc attctaaaaa       360
     tgagtcccga tctaaacgga cggaataata aagcccaata tatattataa cattacagtg       420
     cactcttttc ttgtgtttat aaaataaagt ctaatataca tacaaccaac attaca           476
//
ID   Gypsy-18_DMel-I repbase;    DNA;    INV; 6304 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6304
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1050-1050 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(708..1199,1111..1743)
FT                 /product="Gypsy-18_DMel-I_1p"
FT                 /translation="MQGQIQEIVERILNQKLNSDTASLLDQAVHINNVNMS
FT                 ELERISDKVKCLREFSGQAGEFSSWRKSVERILKIYSSLAGSPKYYGILNV
FT                 IRNKIVGKADSVLEFYNTPLNWTAISKCLTAHYADKRDVTTLEYQMTSLVQ
FT                 GNQSTADFYQQVYTHLSREVGKPKILRWCKEIKVQQISTSKFIPTYPEKLE
FT                 NQKFRTNYANNSQTHARKFEGLSRGPPLPRKPVQQLSNAGRQPFIPHLAYV
FT                 PQTPRVTHYVPQQQYGGNYQQHYGNLPTQPPRPSAPKPQPRPEPMDVDRSM
FT                 QTKQVNYMNRPRFGQQEKRPSPQGLNGLPDKKQRNFHIDTASVQNTDELTE
FT                 TDEATLNEYYSEISDFDQDTDEAENTELNLLE"
FT   CDS           join(5010..5648,5683..6303)
FT                 /product="Gypsy-18_DMel-I_3p"
FT                 /translation="MKLKTYDPILPFIKEEVRISKNLINSLKVRNIKKRHI
FT                 DLIGSAWKWLAGSPDSRDFEIIQEKINSALTNNNNQVILNRLIIEKINKIT
FT                 LANRNLINSLKYEGDAQRDTSTTLMFQIQMLKEEILNLNQAIQWAKADISN
FT                 PQILGDEEINEVKRVLDQNQLPYTNFEEAMHIAEVNIASNGPMLIYIVKIP
FT                 VTDTKLCEEILIKPIKMVNMSTKNICKTTKCNTYNKITICKHKNMIDISNS
FT                 SCLSNLLKSRPATCIRINNQHIPTIDEIAPGVILLNKFSGKISVNGTTSTL
FT                 NGSFVINFSNTTIEIDEQTFTNKYTVHHQPMPAILQTEMTIKNLEEKLSLE
FT                 FVKELNVNNTKTLELLKTTSHTADILMGCVLITGIVVITIRILIKVTKVTK
FT                 FHINRTTDDKPTNDRNEWGHSILKAE"
FT   CDS           join(1728..1973,1951..2310,2184..2675,2537..2821,
FT                 2799..4883)
FT                 /product="Gypsy-18_DMel-I_2p"
FT                 /translation="IKFIRVEPSSLPYFQSKAGNGKMINILIDTGSNKNYI
FT                 QPRLVKKPIKNDQAFFVNSVGGKILITHNTIANPFDLKNLLYYPPKICYTT
FT                 LLKDFDAIIGNDTLREIKAQINMQKGYISTQNKKRIKMKQKTSREVNKLDT
FT                 QVEYSTETQKKHLRTICSNFKNLFGDPDEKLIYTTRVETTLRSTNESPYTQ
FT                 DTTRTQRLLDQKKSFWRPGRKTDIHNKSRNNFKEYKREPIYSRHYPYPEAL
FT                 RPEVEKQIQEQLANDIIRPSRSPIWIVPNKMDASGQRKHRMVIDYRKLNMV
FT                 TIPDRYPIPDINNVLAQLGQNKFFSVIDLKSGFRQIPPRKQISKKRHSQLT
FT                 KEITSLPDCRLASKTLLQFFNGRPQKRLPPNSTKETDIEKTAFSVNQGNNE
FT                 FTRLPFGLKNAPSIFQRTLDDILREHIGIRCFVYIDDIIIFSKNEENHLKD
FT                 IEIIFNILESKYANPAKANMRIQLDKCEFFKKEVEFLGFLVADTGIKKNPE
FT                 KVRAIVDFPEPRTLKYLRSFLGLSGFYRRFIRDFAKLAKPLTALLRGEEGR
FT                 GRISKNASNRTPIYLDENAREAFNKLKKTPASEEIMLAYPDYSKEFQLTTD
FT                 ASDYAIGAVLAQEDKPIIFISRTLSKAEESYAPNKKEMRHFLYGPTKIKIF
FT                 TDHESLTHPTNPKSRNDQMKRWKAILEEYNHELLHKPAKANVVADALSRPP
FT                 LQTHGNLNAMTETVHSSFSSPEKRIPMAEEPINVFKNQILLSLGNKSYKFE
FT                 IVFPTYHRHTITEPIFNSDNLLQILKERLNPSVINGIYTDEETLGKLQEIY
FT                 PLFNNYKTRFSNKMVTDLTDENDQENAIISEHRRAHRNSRENKQQLLEKVY
FT                 FPQXRAKITKITKNCQTCKEQKYERHPNKPELQSTPIPQYPGQIIHVDFYL
FT                 TCKQVXLTAIDKFSKFAQAKIVNSRATQDIKQPLKEILINFGIPEVVIIDN
FT                 EKSLGSGPIMRMLQDQFNIEVYKAPPYNSSANGQIERFHSTLSEIIRCQKA
FT                 EKLHSSLNDLIERSVVKYNYSIHSTTNRKPVDLFFGRKVSLDPKLLQTERQ
FT                 KITDKIKLKQEKDLAHHNKSRNQIKNYCPGQEIFIQNNKRLGTKLSARYKK
FT                 EIVKENRNTTVLAESGRIIYKKLIEIKHRHLQSPSDCVCCGRTNNGLH"
XX
SQ   Sequence 6304 BP; 2559 A; 1327 C; 1029 G; 1387 T; 2 other;
     ggcgcccaac gttaaaaggg tcttgccgcg gaaaaaaaat ccttcgtcgt gaaaaaaaaa        60
     ttcagtaaga gcaccccata ggctgccccg gttcgcgaaa cgataaaaac aacaaatctg       120
     taagagcacc caaatggctg ccaagatcac cgtgggacgg atcctgcaaa gaaaggactg       180
     aaggctatcg ccgcagacga ctggacggga gtgttatgac ggtaccccag tagccccagg       240
     agcaaaaagg aagaatacca aataaccggt tcaggatgta ttttatactg taagttaagc       300
     aagttagaaa taagagaaag tgaaactgaa aaacatacaa aatctaaagg aaaagcgaaa       360
     atataaattt gttcttaaca tacaaaaatc tatatgagaa ataatctaaa aatataaaat       420
     ataaaacaaa ataaaaaaaa atatttgtaa aacacacaaa aatctacatg aaaaataccc       480
     taaaatataa aattttctaa caaaaattaa aaacatacaa aatcgttaca agaaaataca       540
     ggcaaatttt aaaaaaaaca tacaaaacct atacatgaaa cactttggga aaatatcaag       600
     aaaaaatatt ttataaataa tcatggcaaa cccaaacaat ctaactaggc ctgccctact       660
     taataataac acaggccccg aagtaaacca aacccttaac gtaccatatg cagggacaaa       720
     ttcaggaaat agtagagaga attttaaacc aaaaattaaa ctcagacact gcatcactac       780
     ttgatcaagc agtccatatc aataatgtta acatgagtga actagaacga atctcagata       840
     aagtaaagtg tttaagggaa ttttctggcc aagcaggaga atttagctca tggagaaaaa       900
     gcgtagagag aatattaaaa atatattcat cattagcagg atcacccaaa tattacggaa       960
     ttcttaatgt tatcaggaac aaaattgtag gcaaggcaga ctcagtcctt gagttttaca      1020
     acaccccact aaattggaca gctatctcaa aatgtttgac agcacactac gcggataaac      1080
     gcgatgtgac cacactagaa tatcaaatga cttcgctggt gcaaggaaat caaagtacag      1140
     cagatttcta ccagcaagtt tatacccacc tatcccgaga agttggaaaa ccaaaaattt      1200
     aggaccaatt acgcaaataa tagccaaacc catgcaagaa aattcgaagg ccttagtaga      1260
     ggaccacccc taccaagaaa acctgtacaa caattatcaa acgcaggtcg acaaccattc      1320
     attccacact tggcttatgt tccacagacc cctagagtaa ctcattatgt accacagcaa      1380
     caatatggag ggaattacca acaacactat ggtaacctac caacacagcc accaagacca      1440
     tcggccccaa agccacaacc taggccagag cctatggacg tagataggag tatgcagaca      1500
     aaacaagtta actacatgaa cagacccaga tttggacaac aggaaaagag accatcacca      1560
     caaggactaa acggactgcc agacaaaaaa cagagaaatt ttcatataga caccgctagc      1620
     gtacaaaata cagacgaact aacagaaact gatgaagcaa cactcaatga atactattca      1680
     gaaatctcag atttcgacca ggatacagac gaggcagaaa atactgaatt aaatttatta      1740
     gagtagaacc ctcttcgtta ccctacttcc aatctaaagc aggtaatgga aagatgatca      1800
     acattctgat agacaccgga tccaacaaaa attacatcca accaagatta gttaagaaac      1860
     caataaaaaa cgaccaagcc tttttcgtta actctgtagg cgggaaaatt cttataacac      1920
     acaatacaat cgccaatcct ttcgacctaa aaaatttgtt atactaccct ccttaaagat      1980
     ttcgatgcca ttatcggaaa cgatacactg cgcgaaataa aagcccaaat taatatgcaa      2040
     aaggggtata tttcaacaca aaataaaaaa agaattaaaa tgaaacagaa aacctcacgc      2100
     gaagtcaaca aattagatac tcaagtagaa tactctacag aaactcaaaa gaaacattta      2160
     agaactattt gctcaaactt taaaaatctt tttggagacc cggacgaaaa actgatatac      2220
     acaacaagag tagaaacaac tttaaggagt acaaacgaga gcccatatac tcaagacact      2280
     acccgtaccc agaggctctt agaccagaag tagaaaaaca aatacaagag caactcgcaa      2340
     acgacattat tagaccctca cgatccccaa tatggatcgt cccaaataaa atggacgcat      2400
     caggacagag aaagcacaga atggtaatcg actataggaa attaaacatg gttaccattc      2460
     cagacagata ccccataccg gacattaaca acgtacttgc acaactagga cagaataagt      2520
     ttttctcagt cattgacctc aaaagcggct tccgccaaat tccaccaagg aaacagatat      2580
     cgaaaaaacg gcattctcag ttaaccaagg aaataacgag tttaccagac tgccgtttgg      2640
     cctcaaaaac gctccttcaa tttttcaacg gacgctagac gatatcctta gagaacatat      2700
     aggaattagg tgtttcgtat atatcgatga cattatcatc tttagcaaaa atgaggaaaa      2760
     ccatctaaaa gacatcgaga taatatttaa tattctagaa agcaaatatg cgaatccagc      2820
     ttgacaaatg cgaattcttc aaaaaagaag tggaattctt agggttttta gtggctgata      2880
     ctggaataaa gaagaatccc gaaaaagtca gggctatcgt agactttccc gagccaagga      2940
     ccctcaaata tcttcgttcc tttctaggac tctcagggtt ttaccgtcgc tttatcagag      3000
     attttgcgaa actcgcaaag ccccttacag cccttttaag aggggaagag ggccgaggcc      3060
     gtatttcaaa aaatgcctca aacagaacgc caatctacct ggacgaaaac gctagggaag      3120
     cattcaataa actaaaaaaa actccagctt ccgaagaaat catgctggct tatccagatt      3180
     atagtaaaga attccaattg accaccgacg cctccgatta tgccatagga gccgtattag      3240
     ctcaggagga caaaccaata atttttattt ctagaacctt aagtaaggca gaagaaagtt      3300
     acgcaccgaa caaaaaagaa atgcgacatt ttttgtatgg tccgaccaaa ataaagatat      3360
     tcacagatca cgagtctctt acacacccaa ccaatccaaa aagccgtaac gatcaaatga      3420
     aaagatggaa agcaatttta gaagaataca accacgaact tttgcataaa cctgccaagg      3480
     caaacgtggt tgccgatgca ttgagtagac ctcccttgca aacgcatgga aacctaaatg      3540
     ctatgacaga aaccgtgcac agtagcttca gctctcccga aaaacgaata cctatggcgg      3600
     aagaacccat aaatgttttt aaaaatcaaa tactgctatc tttaggaaat aaatcttaca      3660
     aatttgaaat tgtttttcca acatatcaca gacacactat tacagaacca atattcaatt      3720
     cagacaactt gctacaaatt ctaaaagaaa gactcaatcc gtccgtcata aatggaatct      3780
     acaccgacga ggaaacctta gggaaactac aagaaattta tccacttttt aataattaca      3840
     aaaccagatt ctctaataaa atggttacag atctgaccga cgaaaatgac caagaaaacg      3900
     caattatatc ggaacacagg agagcacacc gcaatagcag agaaaacaaa cagcagctgt      3960
     tagaaaaagt atattttcca caaatkaggg ctaaaatcac aaaaataacg aagaattgtc      4020
     agacctgcaa agaacaaaaa tacgaaagac acccaaataa gccagagcta caaagcacac      4080
     ctataccaca atacccaggg caaattattc acgtcgactt ttatctcaca tgtaaacaag      4140
     tagwcctcac agcaatagat aaattttcta aattcgcaca agctaaaata gtcaattcac      4200
     gagcaaccca agacattaaa caacccctga aagaaatatt aataaacttc ggtattcctg      4260
     aagtagtgat aatagataac gaaaagtccc ttggatcagg tcccataatg cggatgctac      4320
     aagaccagtt caatatagag gtctataaag caccacccta caacagctca gccaacggtc      4380
     agatcgaacg ctttcattca actctttcag aaattattag atgccaaaag gccgagaaat      4440
     tacacagttc attaaacgac cttatagaga gatcagttgt caaatataat tattcaatac      4500
     actcaaccac aaacaggaaa ccggtcgatt tattctttgg cagaaaagta tctcttgacc      4560
     ctaaactact acagacagaa agacagaaaa ttacggacaa aatcaaactc aagcaggaaa      4620
     aagatttagc ccaccataat aaaagtagga atcagataaa aaactactgt cctggacaag      4680
     aaatattcat acaaaacaac aaaagattag gcaccaagtt gtcagccaga tacaaaaaag      4740
     aaattgtcaa ggaaaacaga aacactacag tactagcaga aagcgggaga ataatttata      4800
     aaaaactaat cgaaattaaa caccgtcatt tacagagccc ttctgactgt gtgtgctgcg      4860
     gacgtacaaa taacggacta cactaattct gacattgtga cactgactac aggactagcc      4920
     aaggttcaaa cgggatcttt cgagtaatcc acattattga cataaaggaa tatgaaaata      4980
     caattgataa aataaaccag acagccttaa tgaaattaaa aacttacgac ccaatcctac      5040
     ccttcataaa agaggaagtc aggatttcta aaaacctaat caatagcttg aaagtcagga      5100
     atataaagaa aagacatata gatctaatag gtagtgcttg gaaatggctg gctggatccc      5160
     cagacagcag agattttgaa ataattcaag aaaaaataaa ttcagcttta actaacaaca      5220
     ataaccaggt tattcttaat aggcttatca ttgaaaaaat aaataaaatc actctggcca      5280
     atagaaattt aataaacagc ctaaaatatg aaggagacgc tcaaagggat actagcacta      5340
     cattaatgtt tcaaattcaa atgcttaaag aagaaattct taatcttaat caggccatac      5400
     agtgggcaaa agcagacatt agcaaccccc aaatactagg agacgaggag atcaatgaag      5460
     ttaaaagagt attagatcag aatcaattac cctacacaaa ctttgaggaa gccatgcaca      5520
     tagcagaagt aaacatagca agtaacggac caatgttaat ctatattgta aaaatccctg      5580
     taaccgatac caagctatgc gaagaaattc taattaaacc aataaaaatg gtaaatatgt      5640
     caacaaagta gaaaccgaaa atgtaattag atgtaaagat aaaatatttg caaaactaca      5700
     aaatgtaata cttataataa gataacgatt tgtaaacata aaaacatgat agatattagt      5760
     aattcatctt gcctatcaaa tctcctaaaa agtcgccctg ctacctgcat tagaatcaac      5820
     aaccaacaca tccccacaat tgatgaaatc gcacccggag ttatcttact caacaaattc      5880
     agcggcaaga tctcagtcaa cggaacaacg tcaacactta atgggtcatt tgtcatcaac      5940
     ttcagcaaca ccaccataga aattgatgaa caaaccttta cgaacaagta caccgtacac      6000
     catcaaccta tgccggcaat cctccaaacc gagatgacaa ttaaaaacct agaagagaaa      6060
     ctatcactag aattcgtcaa ggaacttaat gtcaataata ctaaaacctt ggagctgtta      6120
     aaaacaacct cccacacagc cgatatactg atgggctgcg tcctaatcac cggaatcgtc      6180
     gtaataacga tccgcatctt gattaaagtt acaaaggtta caaaattcca tatcaaccga      6240
     accaccgatg acaaaccgac caacgaccgc aacgagtggg gacactcgat tttaaaggcg      6300
     gagg                                                                   6304
//
ID   Gypsy-18_DMel-LTR repbase;    DNA;    INV; 294 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-294
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1029-1029 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 294 BP; 89 A; 68 C; 69 G; 68 T; 0 other;
     agttaacacc aaaagaattc gcaacaacaa tctgcgaagg cttgcacgcg catccggccg        60
     tgcacctgca gtaaccgata aatgcaagat cagcgtctgg agcgcatccg tgggagcgac       120
     gatggcagag tcagcaacgg agttggcact gacgctagca gaagcagcga cggtgctggg       180
     gggtataaat atcacccaat tttgtacttt aaatttagtt ccgatttttg tctaaataaa       240
     gacggaccac tggtcctgaa catcttatcg taaaaacaaa cttttacttt aact             294
//
ID   Gypsy-18_DMo-I repbase;    DNA;    INV; 7031 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-7031
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2957-2957 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 7031 BP; 1957 A; 1928 C; 1942 G; 1193 T; 11 other;
     agtggcgccc gagcagggac tcgggattgt tgagcgagga ttctttctgg gattaaagcc        60
     ccgctgggaa gaaccccata aggcaccaga aaatttaaaa aaaaaaaaaa aaaaaaaaaa       120
     aaaaaaaaag gcaaggcaac mggtgaatcg tgaaatagcg agaaacgaga atcgggaaaa       180
     ggaaaaaaga aaaaaaaaaa aaaaaaataa agaatggccg ctgcgacggc aaaatggcga       240
     ccatgagaca ctcaaagttc ataagacagc accggagaaa atagcacgtg acggcaccgt       300
     tagggacaga cagacgacgg acagagagac agagagagag agagagacgg gacagaatag       360
     ccgaaccgaa ggcgcaactt ctcggcaccg aagacacgag gtcgacgacg ggtataaaag       420
     aagcgagcgc aacctaacta gagacactct tctaccagcc atcggcgtgc acacacctca       480
     gcggaggaat tcatcgagga acactcttca accagctatc gacgtgcaca tacctcagcg       540
     gaggaactca ccaaggaatt tttgcaagga tttatcaccg tgggacactc aagggcttac       600
     cagccatcag cgtgcacaca cctcagcggg atattcaagg aatccattat atcatcgtgg       660
     gatattcaag tatttactgg attcatcgtc gtagagtatc tcgtgggata ttcaaggagt       720
     ttactggatt catcgtcgta aaagtatcat cgtgggatat tcaagtattt actggatcat       780
     cgtcgtagga gtatcatcgt gggatattca aggaattack ggattcatcg tcgtagaagt       840
     atcatcgtgg gatattcaag gagttcactg gattcatcgt cgtaaaagta tcctcgtggg       900
     atattcaagt atttactgga ttcatcgtcg tagaagtatc ctsgtgggat attcaaggag       960
     tttactggat tcatcgtcgt ggcacagccg aagtattaac accgttggaa ataggctact      1020
     ttcacaccat catcgtaaag cacctatcgt cgagggaacc attaaaacta tcgtcaaggg      1080
     ctattaggca aaaccactgg ggaatttcat cgttaagatc aaggcgaata acaacaagca      1140
     atgacgggca atacaggctg ggtcagttat aggcgaaagg cggagctgga ggccattctc      1200
     atcgaactgg gactggaacc acatggtctc gtggacgagc tgcggcggcg actaaccgca      1260
     tatatcaata gggawgatct cagcgaggag gtgcaacaga ggctggatta ctgggccgag      1320
     agttacggca accggccatc cccggactca cgaccaccca gccccaaccc cccaaaagac      1380
     gaaaagcagg cagaggtcga gtcagaccgg ctgagcgggc ctacacakct tctcattccg      1440
     cccttggaaa accctcggac aagacttacc atagcatcga caccagcgaa caccataggc      1500
     ccaatcagag gagatgaccc gccaacccgg caaatagtgc aaccgcggaa atggggggtg      1560
     acatttaatg gccgcaccga cccgttacgt ttcatcgagc aattggagga gcgcgcmgta      1620
     ggctaccaag tggatgtcag ctatttgccg agagcgatgc ctgagttatt gactgagcgg      1680
     gccgaggatt ggctgagggg aagcggactc maaggcgcga catgggaaac ttttaaaagc      1740
     gaatttctgc aattctttct cccgccgcgg tatttcaaac gccttggaga cgaaatacgg      1800
     gcccggatgc agcgcgtagg cgaaccgttt caggactacc ttattgcttt gcgagtgatg      1860
     atgcagcggg caggactgac ggacgccgaa cagttggagc gagcatacga caacatgttg      1920
     cccacgtacc aactgtatat gaagcgcgat gaatgccgga caatgacaga actgacacga      1980
     ctggccgtta cctacgaaga gttacgagag ttggaaggac aaagagaatc gtccgggaat      2040
     cgacaacccg ccgcgccacg gggacatgtt aatcctttcc ggaacacccc gaatcacacc      2100
     accgcagccc cggaaaacaa cgcgattaat cgatccgtga cccacgagaa tgaggtacca      2160
     atagacgtac ggagagcgtg tcgtcgatgc ggagaaatag gccatttttc tagggaatgc      2220
     cgcagagccc aagtattctt ctgttgggac tgtggccaga gagggatcat gacgcgggat      2280
     tgctgccgaa gagccacacc gggaaacgaa tcccgtctcc gtccatcagg ggatgtggcg      2340
     gagacgagcc ggcccgttcc ccagaaccag aagaactaat ccaaatacag aagggtcgaa      2400
     tcgtcgcgac ggtggtggtt aatgggcacc gactggatgg caccatcgac acaggggcga      2460
     cgaggagttt cgtcggagcg gaaacggcaa ggaggtggga attgatggag gtagccgggg      2520
     gtgtttgtat ccgagtagct ttagcggatg ggacgtcacg cgaagtcgac cgcaccgtta      2580
     gagctgacat aaaactggga actcggagag tcacgatccc gttactcgtc ttgccgacgc      2640
     tagtggacga actaatccta ggaatggact ttttggcagc tatgcagacc actatccagt      2700
     gcggggaaca tcgcgcggtt attaaagaag ggactcagac gacgacgccg gcgatccacc      2760
     gtggagtctc tcttcggccc acaccgatgg ggaatcaact tgacgatact ccgacaaccc      2820
     aagtcaccca ggcgggacgg aatgaagagc ccgagagcga aggccaggcg gcaagtatcc      2880
     cgatggcgag gaaaagggaa gtctatcaac caagtccaga gaactcaccc accggccagg      2940
     aagtggagaa cccactcggg aataatccag atgtggtagc atttttgacg gaagagctcg      3000
     atcgattcta tgacctcaaa gggaccactc acatcgcgga gcataggata actatgaaag      3060
     atgatcgacc catcaaacaa cgctactatc cgaagaatcc agccatgcaa aagatcatca      3120
     acgaacagat agatgagttg ctggcacagg attgtatcga accatcacgg agtccccaca      3180
     gtgcgccgat agtattggta cgaaagaaga acaataaatg gcgtatgtgc gtggactata      3240
     gacaactaaa tgagcggtcc attcccgatg cgtatccact ccccagaatg acgcatatcc      3300
     tggaaaaact acggcacgcg aagtatatat caacgctgga cttaaagaat ggctattggc      3360
     agatcccgat ggccaaggag agtcgggaat gtacggcatt tacagtacca ggacgagggc      3420
     ttttcccggg gccattcggg ttacattccg ctccagccac cttccaacgc gctctggaca      3480
     gtatcatcgg gcccgaaatg gaaccatacg cattcgccta cctggatgac atcgtggtgg      3540
     tagccgcgac tctggaggag cacatgcgag tcttgagaga agtattccgc cgtctccgtg      3600
     aggccaacct gaggctcaac ccagacaaat gcgcgttctt caggaaaagt attacctatc      3660
     tgggccacgt aatcagtgac cggggaatcc acaccgatcc agataaaatc gtagctgtgc      3720
     agaatttgaa gccacccacc accgtgaagg agcttcgaca gtgcgtcgga ctcgcatcat      3780
     ggtaccggcg gttcgtccca aacttcgccg atgtggtaca gcccatgacc gcactcctga      3840
     aaaagggtcg caagtgggaa tggggcgccc cgcaacaagc agcgttcgag gacttgaaac      3900
     ggaaattgac agaagcacca gtattggcat gtccggattt caacaagcgt ttcaccctac      3960
     aaacagacgc tagcgatcat ggtttgggag ccgtgctgac acaagaggag gatggacagg      4020
     aaagggtggt ggcatatgcc agtcgacgac tagccccacc agaagtaaac tatgcaacca      4080
     ctgagaagga atgcctcgct atcgtctggg ccattcggaa actgcgttgt tacctggagg      4140
     gatacgagtt cacagtagta acggatcatc tggccctgaa gtggttgaac tcaatcgaga      4200
     acccgtcggg caggatagcc aggtgggccc tggagctaca acagtaccgc ttcgaagtat      4260
     gctaccgccg agggaaacag aacgtcgtgg ccgacgccct gtcccggcaa cctgttgtga      4320
     cgctcagcct caccaaggag gagacccccc cactgccaat ggtggattcg gatgatggcc      4380
     caggtcaaaa gcaaccccaa ccagtatccc gattacctca tagcgaacga ccagctatac      4440
     cgccgaacac aagggcggcc aaccgaagaa gagtatgtac cttggaagct ttgtgttccg      4500
     cgggatgctc gtgccagagt ccttcaagag tgtcacgacc aaccaacggc cggccacctg      4560
     gggataagga aaacagcatt gagagtagcg cagcgttact actggcccgg ctacttccgg      4620
     gatgtggcca tccacgttcg acgttgtccg acgtgccaac aatataaagt cagtcaacga      4680
     caggcagcgg gcaagatgct gacccgccag gtaatggagc cgttccacac agtatgcgct      4740
     gatttcgtgg gaccccttcc gcgttcgaaa gccgggcata caatgctact agwcctgttc      4800
     gaccacttca gcaaatgggt kgagcttgtt ccgctacgaa gggcaacctc tgccacattg      4860
     gaacaagccc tgcgggaaak aattgtgagt cacwtcggta tcccgaggat cttggtatgc      4920
     gacaacggga cacagttcac tagtaaagct ttcaaggatt tcgcacggcg ggccggtatc      4980
     gagctacaac ataccgcacc atacatccca aaccagaatc caacggagcg tgcaaacagg      5040
     acaatcaaaa ccatgatcgc acaatatcta ggagaacgtc aaaacgaatg ggacaccctg      5100
     ttacccgagt tcaccctggc tatcaactct agtgtctcgg acacgacggg atacagccct      5160
     gccttcctag tacaagggcg ggagccaagg ttgccaggag ccttgtatga ggaagtcacc      5220
     ccaggaacag gcagagcgac ccccacggca gaggaacgag caaaacagct gcaagaggta      5280
     ttcaagatcg cccagacaaa tgccagtaac gcctccgcgg agcaaggtcg acattacaac      5340
     atgcggagga gggactggcg tcccgccttg ggatcgctgg tgatggtacg cactcacttc      5400
     ctcagtaagg cagccgaggg attcgctgct aagttaggcc cacggtatga tgggccatac      5460
     aaggtcgtca gcttcgtatc cacgaacatc gtaagactgc aacggctagg cacaagacag      5520
     cggaggacgg ccaacgtggc cgacctaaag gagttccacg aagtccccgg agacgcggag      5580
     aaccaggata cgaacgccag gatagcttaa ggggcgggaa actacttacc ttgtattaat      5640
     cttaagacac acgagctagg cataaggcac tataggcaaa cattaggcaa agcgcaggca      5700
     ttaggtagca gtcttccctt gttctcacta atattacggt taaaacaccc cacagcacaa      5760
     ctgagcggca gcctcgacgt acgcgctgga gggacggcaa ccgctgggcg gcccaattgg      5820
     cacaggaaga ggaggcggca actgctgaag aacgacggag ggaggcagcc cacagagcgg      5880
     agaggaggag gcagcagctg gcggcacaca tcacacagca atgggtcagc caccataatc      5940
     ggcactactc ggtggtgacc gcggagcgcc agcaagcccg tcgcgaagct caacgagcaa      6000
     gggcagcagc gtttggaccc ggggtgcggc tagcagggga agagcgggta gaccacatcc      6060
     cgcattaccg acgcccgtcg gacgtagcac tgctggaaga ggtttacctg gccgtattat      6120
     tggaccgggc acggccggag tcatctaagg atacgcccaa caccaacacc ccaaccatta      6180
     ccttccacga ggccgacacc acagaaacca tcaccacatc ccaggcccct gccaccactc      6240
     tcatcgacgt agccggatcc ccaacccaac ccccgtcgac gttatccccg acggccccgc      6300
     cgaaaccagc aatgaccgga cacccaaccc aacccccatc gacgttatcc ccgacagccc      6360
     cgccgaagcc agcacggacc ggaaccccaa cgcaaacccc accgaagtta tctccgccga      6420
     ccccgccgaa tccagcagag ccatcaatcc acccacaccc acacccgcag cctcagcctc      6480
     gtccagctcg tgcaccccac ccccttttca aggcgtgacg cccacttgga ccctgtccga      6540
     cgacagcggc tgggacgatg aggcggaagc agagcgccgg cagagctccc ctgaggagaa      6600
     tgacgaggac cagcgagcca ccccactccg cctaccccag accttgctgg acgacccggg      6660
     tagtcgtgtg ggggagggct accatgtcca tcggcggcgg cgagagaagg ccgggcagga      6720
     cccaccactg gaggaggaca cccccgaacc ccctaggaca cccgggcgcg cgctaccacc      6780
     tcagggcctc tgggtagcca cgccagaagg atggcggacc accgagacca ccctgccata      6840
     cgatctcgtg gcgcacgtgg aacgggagat ccaggagccg accccgaagc gcatccatta      6900
     cgccaggaca tttgtcgggc agcgctaccg gatctgccgg tattgcaccg gaccaccaac      6960
     catacgacgg ctaggggaag cagcgacgcc aacggacccg caaaacgccc cctcggcaac      7020
     aaaggggggg g                                                           7031
//
ID   Gypsy-18_DMo-LTR repbase;    DNA;    INV; 2575 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-2575
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2964-2964 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 2575 BP; 640 A; 637 C; 743 G; 550 T; 5 other;
     tgtgatgaat cacaaattta cccaaccccg accccgagaa aactgtcccc ttaatcctct        60
     ttccaccccg atctcaataa atagcaaaga ttaagaaaat atgtttattt ggaacaagta       120
     ggtagtacat agcaacagca gcagaaggaa aaaaaggaga aaacgacaaa acggacgcgg       180
     acagaatacg attttggaaa tctaacggcg catctctctc attgccgctg acgcatcgac       240
     agattaagag aaaatgagta acgcgcgcag ccgaaacgat taagagagaa agcgtcgctt       300
     aaacataact aataccaatg caacgctctc tcagcgcata gatgcagcga cgccaccgcc       360
     gacagaagtg aaagctttga atagcaaaga acaaagagcg cagagtgaga gcgaaagcgt       420
     cgcttaaaca taactaatac cgatgcaacg cctctctcag cgcaagatgc gcgacgccgc       480
     cgccgacaga agcgaaggct ttgaataggc aaagaacaaa gagcgccgag cgagatcaag       540
     agtaaaaagc gcgctaacat aacgtaccaa tgcaacgcct ctctcagcgc atagatgcag       600
     cgacgccgcc gccggcagaa gcgaaagctc taggcagcaa ggcttagcgc taattgccga       660
     aaattaatgc gatcacttat cttttgaccc ttggagctga cggacgtata cggacaagaa       720
     aaaactagaa catggacagt gacgcggaca gggctcgccg gtaagccgac gggaattaca       780
     ttctcgtgtg atattttttt tttttatgcg tgcgccgctc tctwcttttc taatagtttc       840
     ataaagtgcc ttatagtggg gggcaatggt gagttagtga gattagagtt aagtcctgtt       900
     gtttaatgaa aaaaaaaaca caaaagaaat aaataagtaa taaagaaaat taataaatcg       960
     cgaaaccgaa aataatagcc aaatccgtgt tgmgtgaagt gattaattag tggacttttg      1020
     tggaaaacga gtcgtcgcgt ttgggaggcc gcggccgacg gcgtttgcaa gaaggacttt      1080
     gagcgttata tgccaaagac tggaatgcga gccgccggct cgctgccttc cctgactcgg      1140
     tgactcgcac ctcaccgtag cctgccggga ctgcgcaatc tggtcacgag cgttatgcgc      1200
     tatggccgga ttgcggggtc cccggtttgg gtacgcgttg agaggaggag tgctgtgtgt      1260
     gtcgtgatga gaaagcggcc actcaggggg ttcggtgcmg cggagtcgcg ccgaagactc      1320
     cgagcgttat atgccggagt ctgacgtgag aagccgcggg cacccacatc tcaccgtagc      1380
     ctggcgagag ttgcacagcc cggctctgag cgtcatatgc cagagccgga ttggcaatga      1440
     tggtcagtgt ggctaccctc gtgagtagtt ggtttgctgt gtcgtcgttt gtgggtgttg      1500
     ccacctcggg gctcggtgca gcggmatcgc gccgaagact ctgagcgtta tatgccggag      1560
     tctgacgtga gaagccgcgg gcacccaaac tcaccgtagc ctggcgagag ttgcccaacc      1620
     cggctctgag cgtcatatgc tagagccgga ttggcaacga tggtcagtgt ggctaccctc      1680
     gtgagcagtt ggttcgttat gtcgtcgctt gtaggtgttg ccaccgcggg gctcggtgca      1740
     gcggaatcgc gccgaaggct cggggcgtta tatgccggag tctgacgtga gaagccgcgg      1800
     gcacccaaac ctcacagtag cctggcgaaa gttgcacggc ccggccctga gcgttctatg      1860
     ccagagccgg attggcaatg atggtcagtg tggctaccct cgtgagtagg tggtttactg      1920
     tgtcgtcgat tgtgagtgct gccacctctg ggctcggagc agcggagtca cgccgagggc      1980
     ttccgagcgt tatacgctgg aatcccaagg cgcgaaactg ctgaacacgg agcgcctcac      2040
     cacagcccga cgggcgccgc acgacccgac cctgagtgtt gtacgccagg gctgggccgg      2100
     ggcggcgacc cgtgtggcgg tggacgagat cgaggtggtg gcgtgtagcc tcatggggaa      2160
     gatttcctgt cggattagag gtggaagaca gtgggatcag actgaaggct ctgmgcgtcc      2220
     tatgccagaa cccgacgtga gaaacccccc gacgtgagaa accactggct tccaggtacc      2280
     gtaccgctgc ccaatggggg gggggctggt gtggcatagt taccccgctt ctgagcgtta      2340
     tacgctagag cgggactgta ttcgccttcg ttctcagttt tacgttatca agttgtcgag      2400
     tgtcttttgt taaccaattt ctagttttct cgtgccccca atcgcgggta gttcagccat      2460
     tgtggctcac tatccaccct caactctcca gtctcggcag attacaaata gtcttgtaaa      2520
     tgactctggg gtagactgag agctgtaccc cggccgtagt aataacttct ttaca           2575
//
ID   Gypsy-18_DTa-I repbase;    DNA;    INV; 4820 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.08, Created)
DT   16-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4820
RA   Kojima N.F. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1630-1630 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus
CC   3' truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..4343
FT                 /product="Gypsy-18_DTa-I_1p"
FT                 /note="Retropepsin, Reverse transcriptase, RNase HI
FT                 , Integrase core domain."
FT                 /translation="TPAGADTTPTEAANKPLVEATNHNAETTGEYPHHRPP
FT                 GGLPKVRRSRALGTRLSKPALVVLLGVRQSGYQERRVLPKSGKWSAISAAE
FT                 RRAGIAKCFLSKLTGKLIEEEQQLSAAVTIGGGTYKATIDTGATASFISEE
FT                 LADNLAALGKITRTRRQVRLADGRSGEISAQLEVEIAFGNKRLTMSLLILP
FT                 GVVDSLVLGWNFLTQVGTEIKCAGHEITIPARNRHNGWLEEKLSVAVVQHT
FT                 SEDNDTAEFLEAQLADFNTMTGTSNMAEHRITMKDDKPIKQRYYPKNPKVQ
FT                 GEINAKVDELLGMGYIEHSKSPYSSPIVMVKKKTGKWRLCVDFRQINAKSI
FT                 KDAYPMPRINYILDQLREARYISSLDLKDGYWQIPLEESSRQYTAFTVPGK
FT                 GLFQWRVMPFGLHSASATFQRVLDQVIGPEMSPHAFAYQDDIIVIGRTLEE
FT                 HKANLREVFRRLKEANLRLNPDKCQFFKKELLYLGHRVTSEGIGTDPEKVA
FT                 AIAELEPPSTVRELRQYLGVASWYRRFVPDFAKIVKPLNDLLRKGNKWVWT
FT                 PEHQMAFEEVKARLVADPVLACPDFDKPFTLQTDASDYGIGAILTQETENG
FT                 EKVISYSSRTLNGAEKNYSTTEKECLAIVWAIRKLKPYLEGYHFKVVTDHM
FT                 ALKWLNSIESPSGRIARWALELQQYDFEIAYRKGQLNVVADALSRQPLPET
FT                 LRGIKETSAAEASAACSWSQEMCDKIRTQPQKYPDYVMEGENLYRSIPHRA
FT                 GSEDVVTWKMCVPRALRETVLKENHDSPAAGHVGSRRTIARLAARYYWPGM
FT                 HRDARAHVRKCETCMRFKPNQMQAAGKMLTQVPEEPWATVCADFVGPLPRS
FT                 KHGNSMLLVLIDRFSKWTELVPLRSATAESLKKAFRERIIARYGAPKVVIT
FT                 DNGVQFASRIFKNFLAEMGIRQQFTAPYTPQENPTERANRTVKTMIAQFAG
FT                 QDQRTWDEKWPEIMLAVNSSISESTGYTPSFLTQGREPRLPSALYDRETLG
FT                 TGRATETPDENAQKLKEIFEIVRRNLEKASQDQARYYNLRRRQWTPAVGDV
FT                 VWAKEHHLSKAAEGLPQNWHLGTTGPTRS"
XX
SQ   Sequence 4820 BP; 1503 A; 1220 C; 1339 G; 756 T; 2 other;
     tctggcgccc aaaacgtgat tgtcccagca gtgaaagcaa cgtaaagcag aatggggaag        60
     aaatggattt accgcctcaa gacagaggat tttgcctacg tcgcagagag gctaaacatc       120
     gctctggaag gaagaacaga cgacaaaagg aaggcattgt cagaatacta ttctgagacg       180
     gagaacgacc cgaaacttgc cgggatctgg gtcgagctag aggcagcata ccccgagaaa       240
     acagccccaa gcatcacatt gactcccgcc gaaggggaag acctattggc aagcctgagc       300
     atcgacaaca tgcaaaagga ggcacagaag agagtgccga gcccggagaa gaaagagaca       360
     gagtgcgtac agaaaacggc agcaccggta cggactccga ctccgacacc cagccagcca       420
     gattatgcaa aggttgcgaa acaagtccgc gaatggtcgt ttaagttcga cggcattgag       480
     aaaccgttcg agtttctgga gcaagtggag tggtccgcaa atacatacgg cctggatttg       540
     gatatgattc cccgcgccat gccagaatta ctgaagggga gggcattgaa gtggttcatc       600
     tccaacaaca aacagtggca aacctgggcg gaattcatcc agagctttaa cacatacttc       660
     ctgccgagag actttttctc cacactttcg gacaaagtca agcagaggaa gcaaggctac       720
     ggggagacgt ttaaggacta catgatcgac atacaggcaa tgatgaggcc acttaattat       780
     tcgccgacag aggccctcag catcatccgg cagaactgca caccgaacct aaagatcgcc       840
     ctcagagcat acacagtggc agacctggat acactcatgg acctagccga cgagtttgag       900
     gaactggaga aggaacggga gacatttgcc caggagaaca aattcgccag ggcaaaacca       960
     gcagctcagg cacaaacgat gtgcagacgg tgcgaggaca ctggcgacca ggaaccccgt      1020
     gggaacagtc aatggacacc gcccctacaa gaccaccgac agcaggcaac caacccaccg      1080
     tatgaacgcc agcgggcgcc gatacaacac caacagaggc agccaacaaa ccccttgtgg      1140
     aggccaccaa tcacaacgca gagaccacgg gagagtaccc acatcacaga cccccaggag      1200
     gcctgccgaa agtgcggcgg tcacgggcac tgggaacgcg gctgtcgaaa ccagcgcttg      1260
     ttgttctgct gggtgtgcgg caaagtgggt atcaggagcg tcgagtgctg ccaaagagcg      1320
     ggaaatggtc agcgatctca gccgcagaga ggcgggcggg gatcgcaaaa tgcttcctct      1380
     ccaaactaac tggcaagctg atcgaggagg agcagcagtt gtccgcagcg gtaacgattg      1440
     gtggaggcac gtataaagcc acaatcgaca ccggggcaac agcgagcttc ataagcgagg      1500
     aactggcgga caatctggct gcactcggaa agatcacaag gacaagacgg caagttaggt      1560
     tggcagacgg gagaagcggc gaaatcagtg cacagctgga ggtagaaatc gcattcggaa      1620
     acaagcgatt gaccatgagc ctgctgatac taccaggggt agtggattcg ttggtgttag      1680
     gatggaattt cctcacgcaa gtcggaaccg aaataaagtg cgccggacac gagatcacaa      1740
     taccggccag gaaccgacac aatgggtggc tcgaggaaaa gctatcggtg gcagtcgttc      1800
     aacacacaag cgaggataac gacacagcgg aattcctgga ggcacagcta gccgacttca      1860
     acaccatgac gggaacgtcg aacatggccg agcatcggat cacgatgaaa gacgacaagc      1920
     caatcaagca acgatactac cccaagaacc caaaagttca aggggagatc aatgcgaagg      1980
     tggatgagct tctcggaatg gggtatatag agcactcgaa gagcccatac agctccccca      2040
     tcgtgatggt gaagaagaag acgggcaaat ggagactctg tgtcgatttc aggcagatca      2100
     acgcaaagtc gataaaggat gcctacccaa tgccgcgcat aaattatatc ctcgaccaac      2160
     tgcgagaggc gaggtacatc agcagtttgg acctgaagga tgggtactgg caaatcccac      2220
     tggaggaaag cagcaggcaa tacacggctt tcacggtgcc cggaaaaggt ttgttccagt      2280
     ggagggttat gcctttcggt ctccattcgg catccgcgac ttttcaacga gttttggacc      2340
     aagtaattgg tccggaaatg tcaccccacg ctttcgccta ccaggacgac ataatagtga      2400
     tcggacgcac gctagaagaa cacaaagcga acctgagaga agtgtttcgg cggctaaaag      2460
     aagcaaatct gaggctaaac ccggacaaat gccaattctt caagaaggaa ctgttgtatc      2520
     taggtcatcg agtgactagc gaaggaatag gcacggatcc ggaaaaggta gcagccatcg      2580
     ccgaactaga accaccatcc acagtaagag aactccgaca gtacctgggc gtagcatcgt      2640
     ggtaccgccg attcgtacct gatttcgcaa aaatagtcaa accactcaac gatttgctac      2700
     gcaaaggcaa caagtgggtg tggacaccgg aacatcagat ggcgttcgaa gaggtcaagg      2760
     caagactcgt tgcagacccc gtactggcgt gcccggactt cgacaaaccg ttcaccctgc      2820
     aaacggacgc gagcgactac ggcatcgggg caatactaac ccaggaaacg gagaatggcg      2880
     aaaaggtaat ctcctactca agccgaacgc tcaacggcgc cgagaagaat tactcgacga      2940
     ctgagaagga gtgcttggca atcgtctggg cgatccggaa gctaaagcca tatctggaag      3000
     gttaccactt taaagtagta accgaccata tggccctgaa gtggctcaac agcatagaaa      3060
     gcccttcagg aaggatcgcc agatgggccc tggagttgca gcagtacgac ttcgagatag      3120
     cgtacaggaa gggacagctg aacgtggtgg cggacgctct gtcaaggcag ccactacccg      3180
     aaacgcttag agggataaag gagacatcgg cggcggaagc ttcagcagcg tgcagctggt      3240
     ctcaagaaat gtgcgacaag ataaggaccc aaccgcaaaa gtacccggac tacgtgatgg      3300
     aaggcgagaa cctgtacagg agcataccac atagagcggg cagtgaggat gttgtcacat      3360
     ggaagatgtg cgtcccgaga gctctacggg aaacggtgct gaaagaaaac cacgactcac      3420
     cagcagctgg gcacgtagga agccgaagga caatagcacg tctggcagcc cgatactact      3480
     ggccaggtat gcatagagac gccagagccc acgtaaggaa atgcgaaacc tgcatgagat      3540
     tcaagccgaa tcaaatgcag gcggcgggca aaatgctaac ccaagtgcca gaggaaccat      3600
     gggcaacagt atgcgcggac ttcgttggac ccctaccgcg atcgaagcac ggcaattcaa      3660
     tgctactggt gctcatagac aggttctcta aatggacgga actagtgccg ctacgcagtg      3720
     cgacggccga atcgcttaag aaggcgttta gggaacgaat aatcgcaagg tatggggccc      3780
     cgaaggtggt cataacggac aacggagtgc agtttgcgag tcgcatcttc aaaaattttc      3840
     tagccgagat gggtatcaga cagcaattca ccgctcccta tacgccgcaa gaaaacccga      3900
     cggagcgagc aaataggacg gtaaaaacga tgattgcgca gttcgcagga caagatcaga      3960
     gaacatggga cgaaaagtgg ccggagatca tgctggccgt caactcaagc atatcggaat      4020
     ccactggata caccccatcg tttcttaccc aaggcagaga gccacgacta ccgagcgccc      4080
     tatacgacag agaaacctta ggcaccggac gagccacgga aaccccggat gaaaacgcgc      4140
     agaaactaaa ggagatcttt gagatcgtaa ggcggaatct ggagaaggcc tcccaggacc      4200
     aggctaggta ttacaaccta aggaggaggc aatggacgcc ggcggtgggc gacgtagtct      4260
     gggccaagga acaccacctg tcaaaagctg cagaaggttt gccgcaaaat tggcacctag      4320
     gtacgacggg ccctaccagg tcgtagattt cgtctcaccg gtgatctgca aaatacggaa      4380
     cgtaaacaca aagaaagaac ggaccataca tgtaagcgag ctcaaacagc aacaaacaca      4440
     agacacaagc gagcaacagc atcaggcaga cgcaactgag aaacaacaac attgaaaact      4500
     ccaggaaaca gccgaggaaa ctccatggaa ctgccgagga aactccaggg aacatccaag      4560
     gaaactccag gaaacagccg aggacactcc agggaaccgc cgaggaaact ccagggaaca      4620
     gccgaggaaa ckccaaggaa actccaatcg cgaggatact acaaggatac actccaagga      4680
     tacaatcaca aggataccac aaggatacac taacaaggat acaatcacaa ggatacacca      4740
     aaggatatac cagcaakgac aacaccaagg acactgcgag gcagttggat tgaacatcag      4800
     gcctaagcga gagtcatcca                                                  4820
//
ID   Gypsy-18_DTa-LTR repbase;    DNA;    INV; 1966 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.08, Created)
DT   16-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1966
RA   Kojima N.F. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1631-1631 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1966 BP; 539 A; 503 C; 589 G; 335 T; 0 other;
     tgtgaggagt tgaataactc atcacaaata gcagcagcta gaataacgga tggccggccg        60
     cttaccagtt acgcggcgaa tttgcgtagt agcggcgcgg cgaagagagt ttggagaccg       120
     agaagtgtag agtgagagtt tggagacttc gaggtcaaga gagagaactc tcacaaagag       180
     agtttggaga gtcatggcgg agagtgagag agtggagact ctgccgtgaa ctttggacca       240
     ggaggatgag gccacatcgc ggcagcggag cggcgcataa gcgtgccacg tgcaccagga       300
     gaacagcggg acggccgcaa cacatggatg tccagttcga agctgggcga aaagaacaac       360
     gggcccaaac aggagccagg gactttggac ctggattgga gacttcgcgg gcagagccag       420
     agtaccgtgt gtgcaaaagg aaataacgga actgcaccgg actttggact ctgccgtgga       480
     ctttggacca ggaggacaag tgccacctct cagcaacaga gcggcacaca ggcgtgccac       540
     atgcaacaac agaatcagcg ggacggcagc agcatgcaga agaacaattt aaggccgtgc       600
     gtgaaggaca agtgggtcaa acagggacca cggactttgg acctggagtg gagagattca       660
     gcgggcagag cgcaaaaggg aaataacggt tcccggaggc cctatataaa gccgccgggc       720
     gctggcaact ggatcagtcg atcacaagga atcagtccgt caagatcagt caagatatca       780
     aagtgaataa gtcagtcaat cagtgccaag taatctacaa gtgaaaacac aagtcaagtc       840
     gtcggaagca gcgccgtggg agcctacaag gagcaagatc gctacgtcga gacgttcggg       900
     attggatcat caggaatctc cgaattgaga cacaggtagc tgaggtccgg agggcatcac       960
     acggctaagt caaggcaaac tgttcctact cctgtccgac taaagcctcg cattgcgtct      1020
     ggcgtgtccc tcagagtgaa caggccaatt gtcatttcaa ggcgctgtcc tagagagaac      1080
     aggctgttgg tcatttcaag gcgctgtcct agagcgacta ggcccgtcgt gatttcaagg      1140
     cgctgtccta gaaagaacag accgtttgtc agttcaaggc gctggcctag aaagacccac      1200
     ggttttacga gccgtgaccg gcgtgtccgt aaccccaagt accaaaagcc acgctacgtc      1260
     caacctcaca accaacgcac cccggagcag agcatcggac atcgagctgc acggaaacgt      1320
     cacgaacgag ctagcgggtg aggccagggt ggaacgttcg tttacaccag gcgtaaggca      1380
     aggtgaagca ctaggcagcc tccaggtatc tacctagact gtcagcgcga tccgagcaag      1440
     agcctagtgg gaccatccgg gacagagcca gggacaggcg gttgtgtgtc tataggcgtt      1500
     gccctgtaga gcgcagctcc tgttcaccct agtctgagaa cggtgacgct tccctaagcc      1560
     cacacggctg atctccttgc gagtccgagg cgctacgtgt ggtcggcgag tcaacgcatc      1620
     ggagcagaac atcgccgagc gtccacaggg agctacaggg agccacaaga ccggagcacg      1680
     gagtcaacga ggaaggcgat caccgaggcg acgcaccgtc gtggagagac gagcatcact      1740
     aggaggcacc gaggaccacg agtggcgaca ccaaggccat ccgagccacc aagcccgctg      1800
     taatcatacc cgcaataaac ccaattcgaa cccgtgaatt ctgtgctttc tcactgatct      1860
     actgggcggt cacgtttata taaatttggt gggacgaaca cataacttct ctgagctagc      1920
     cgcacgaatc tcgtagcgag cagacataca aaatcagttc gttaca                     1966
//
ID   Gypsy-18_DWil-I repbase;    DNA;    INV; 5616 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DWil_;
KW   Gypsy-18_DWil-LTR; Gypsy-18_DWil-I.
XX
NM   Gypsy-18_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5616
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           809..2293
FT                 /product="Gypsy-18_DWil-I_1p"
FT                 /translation="MSLVQHSPPNTDTPAEDVCKICSLVLDNTQTCFCTPC
FT                 KHIFHKSCLEALLEKEKHCPICESEINVSSIKLVVGNCSPKAKEKHLSLAP
FT                 STSRAWTRNFTKQLSQVPRDRAEQLNEPAISVSEAPASCLDASHSSNQPEP
FT                 QLPRTMPNQRRARPNRGNNTRPNREIDYTVIQNMIEQTVSRVVSSLPMNLG
FT                 QREVPLDTVQTRSLISSPCPTTVQNAKIANVMQKWNLRFDGSTEGLGVEEF
FT                 IYRVKALTEETLDSDFIGVCKHIQILFGGKAREWYWRYHKQVPRIVWSEFC
FT                 SAIRQQYKDYRSDFMSKEMIRARKQKAGESFVCFYDEVASLIDKFGIKFEE
FT                 EELMEILQNNLLPEIRQKLLYQSIASIGHLRRLVQMQENLTQELSPQVKVI
FT                 SNTKANGRRQIFEIQEGETEDNKIVPDPDEEYEVAAVQGKFVCWNCREAGH
FT                 TWQNCLEERTIFCYGCGTANVYKPQCQDCIKRLAENRPKGASRQRQMLPQ"
FT   CDS           2218..5571
FT                 /product="Gypsy-18_DWil-I_2p"
FT                 /translation="MSRLYKKASGKPTEGCIQTTSDAPAIVTSNSENVQQS
FT                 INIVNHKVNVRKSQKLPLRFLSYPERLQHYLTVKDRIFRSDQPLSKRTLRL
FT                 RKYYDHARQTKKLFVATIFRNDNDNRSYAEVSFLTFTELGLLDTGASISCI
FT                 GSDLAQTDFSHFPQFVKTKGQVRTADGNGQNVIGMLEVIVRYGRLERMLKL
FT                 FVIPTLKKRLILGHDFWRIFELAPSIISSIEIGSEKKLETDPSSYSLTYSQ
FT                 IRQLEAVKQMFPNASHHLGRTSLIKHHIEIGEAKPVKQRFYAISPAVEKLV
FT                 YTEIDRMIQLGVIEPAVSAWSSPIRPVIKPNKVRLCLDARKLNAVTIKDAY
FT                 PLPSIDSIFSRLPKANIISKIDLKDAYWQIELTEASKPLTAFTVPGRPLYQ
FT                 FTVMPFGLCNATSTMSRLMDEVVPADLRHCVFCYLDDLCIISEDFSSHLSV
FT                 LARIAEQFRKANLSINIEKSQFCVASISYLGYVIDSKGICTDPSKIECIKN
FT                 WPPPRNLKQTRGFLGVCGWYRRFIPNFADLTYPITELLSTKRNFVWTPEAQ
FT                 ASMNKLKDLLTSAPILQNPDFNKKFFLHCDASDYGIGAVLVQLSDAEEEKP
FT                 IAFMSKKLSRAQRNYSVTERECLAVILAIEKFRCYLELQEFEVVTDHSSLL
FT                 WLMRQQNVSGRLARWIFRLQQFKFNMSHRKGKEHLIPDALSRLPNLSIEAI
FT                 EMGPIIDLDSEAFLDDSYMYLKKKITENPGKFPDIKIVNKHLYIRTEHANG
FT                 DSYQEKLSWKLWVPDKLRVDVLKQAHDSHTSSHSGMQKTVDKIRRTLFWPG
FT                 MVKDVRDHIRQCDTCKESKAPNYTLRPPMGQHIPTCRPFQRLYIDLLGPYP
FT                 RSKNGFVGLLIVLDHFSKYHWLQPLKKFRTEDIQEFLLKQIFHCFGVPEII
FT                 VSDNGVQFKANSFNSFLTELGIKHQYTALYSPQSNAAERVNRSLLAAIRSY
FT                 LKNQDQTLWDQHLTSISCALRSSLHQSLGCSPFKALFGLDMVTHGSDYKLL
FT                 KELKLLQEPITPLNQTDQLNLLRQDIRENIKKAYDRNVAQYNLRSKSVSFK
FT                 EGQEVFRRNFALSKFSQNFNAKLAPKFIKCRIKKKLGNCFYLLENMQGREV
FT                 GTFHAKDIRN"
XX
SQ   Sequence 5616 BP; 1844 A; 1037 C; 1106 G; 1629 T; 0 other;
     taaaaatttt tggcgcccaa cacgtggggc aggataaaag catactcaac tccttgacaa        60
     tattagatat agacaagaag tttatttaag ttacggcatg tggttatttt gacagcagac       120
     caccttagaa gtatgtagtt ctaccctaag tgatataaag tgttgagttc aagtatatca       180
     ggaaagtctt aagatcaaaa catgaggttt caaatttttc gtcgattttg ttagactata       240
     ttatggttta acttacgcgg ataaatgaac ctgcacggtt taagtctgct tggcgaagcc       300
     gatgtttctg ttaggaatat tcagccgcaa agttaaaagc aagaatgaat gtaaacaaga       360
     atttcaatac tctgtatcac aaattgctcg tttagttaag gtcctcgata atttagcact       420
     cgtttagtaa agtcgtttaa acttttctta gcaatttaga ttattgtata ttggatgttt       480
     cgatatcagt actgattgga tttaagatca tgttacgaca gctgaacgtc taaagaaatc       540
     gaagagaaca cgaacatatt gttttatagt aagactcgga tgatttaata atctggtgtc       600
     tggatcttgg taatacagat agtatagcct tgccgatcag aagattcaaa aggccgaagc       660
     ctgactaaaa gaaacaattt tgtagatgca atagcccaaa acaaaaataa taaagttacc       720
     aatattcttt aggttcattt agctagttac gatttcaaat catgtaccca gtcatgtcac       780
     gcttaggaag ataattttaa aaaaaagaat gtctctagtt caacatagtc ccccaaatac       840
     ggacactcca gcagaagacg tatgcaaaat ttgttccttg gttttggaca acacgcaaac       900
     atgtttctgt actccctgta aacacatttt tcataaatcc tgtttggaag ctctactaga       960
     aaaggaaaag cattgcccaa tttgtgagag tgagataaat gtgtctagta taaagctcgt      1020
     agtaggcaac tgttcaccaa aagcgaagga aaaacatttg tcattggcac ccagcacttc      1080
     tcgagcatgg actcgtaatt ttacaaaaca gctaagtcaa gtcccaagag acagagcaga      1140
     acagctcaac gaaccagcta tatcagttag cgaagcacca gcatcatgct tagatgccag      1200
     tcacagtagt aatcaaccag aaccgcaact acctagaacc atgcctaatc agcgaagagc      1260
     aagaccaaat cgtggtaata atactcgtcc taatcgagag atcgattata cggtcataca      1320
     aaatatgata gaacaaacag tttctcgtgt agtatcgtcg ttacctatga atttaggcca      1380
     gcgagaagtc ccattagaca cggtccaaac ccgatctctg ataagttcgc cctgccctac      1440
     aactgtgcaa aatgcaaaaa ttgcaaatgt aatgcagaaa tggaatttac gttttgacgg      1500
     atctacggaa ggtctaggag tagaagaatt tatttataga gtaaaagccc taacggagga      1560
     aactcttgat agtgatttta ttggggtgtg taaacatatt caaatattat ttggaggaaa      1620
     agcccgcgag tggtattgga gatatcataa gcaagtccct cgaatagtat ggagcgagtt      1680
     ttgttcagct attcgtcagc aatataaaga ctatcgatca gattttatga gcaaagaaat      1740
     gattcgtgct agaaagcaaa aagctggaga atcttttgtt tgtttttacg atgaggtagc      1800
     ttctttgatt gacaagttcg gtataaagtt tgaggaagag gagctgatgg aaattttaca      1860
     aaataacctg ttgccagaga tacgacaaaa gttactatat caatccatcg catcaatagg      1920
     tcaccttcgt agattagtac agatgcaaga aaatctaaca caagagctca gccctcaagt      1980
     aaaagtaatt tctaacacca aagcgaatgg acgcagacaa atttttgaaa ttcaagaagg      2040
     ggaaaccgaa gataataaaa tagttccaga cccagacgag gaatatgaag ttgccgctgt      2100
     gcaagggaag ttcgtttgtt ggaattgtcg cgaagccggt cacacctggc aaaactgtct      2160
     agaggaacgc acaatttttt gttacggttg cggcacggcc aatgtttaca agcctcaatg      2220
     tcaagattgt ataaaaaggc tagcggaaaa ccgaccgaag ggtgcatcca gacaacgtca      2280
     gatgctcccg caatagttac atcaaactcg gaaaacgttc aacaaagtat caacattgtg      2340
     aatcacaaag taaacgtacg aaagtctcaa aaactcccac taagattttt gtcatatcct      2400
     gagcgtttac aacattacct tactgttaaa gacagaattt tcagatctga ccaacccttg      2460
     tctaaacgca cgttaagact aaggaaatat tatgatcacg caagacaaac caagaaactt      2520
     tttgttgcaa caatttttag aaacgacaac gataatagga gctatgcaga agtctcattt      2580
     cttacgttca cagaattagg tttattggat accggtgcca gcattagttg tataggctcg      2640
     gatttagcac aaacagattt ttcacatttt ccccaatttg taaaaactaa aggtcaagtg      2700
     cgcacagcgg acggaaacgg ccaaaatgtg attggtatgt tagaagtaat agtacggtac      2760
     ggtagattgg aaagaatgtt gaaattattt gtaattccta cgttgaagaa aagattaata      2820
     ttaggtcatg atttttggag aattttcgaa cttgccccgt ctataattag ttcgatcgag      2880
     attggttctg aaaaaaagtt agagactgac cctagttctt attctctcac gtattcccaa      2940
     attagacagc ttgaagccgt caagcaaatg tttcccaatg caagtcatca tctcggacgt      3000
     acgtctttaa taaaacatca tatcgagatt ggcgaagcca aaccggtaaa acaacgtttt      3060
     tacgctatta gtcccgctgt tgaaaaatta gtatacacag aaattgatcg tatgattcaa      3120
     ctaggagtta tcgaaccagc tgttagcgcc tggagctctc ctattcgacc agtgataaag      3180
     cccaataaag tgcgactgtg cttagacgct cgcaagttaa atgcagtcac aattaaggat      3240
     gcttatcctt tgcccagcat tgacagtatt ttttcaagat tacccaaggc aaatattatt      3300
     tccaaaatcg atttaaagga tgcctattgg caaatagaat taacggaagc atccaaacct      3360
     cttactgcat ttacagtacc aggaagaccg ttatatcaat tcacagttat gcctttcggc      3420
     ctttgtaatg ccacatctac tatgagtcgt ctaatggatg aagtagtccc tgctgacctt      3480
     cgccattgtg tattttgcta tttagatgat ctgtgtataa tttcagagga tttctcatct      3540
     catctttcgg tgttagcaag aattgcggag caatttcgga aagctaatct gtccattaac      3600
     atagagaaaa gtcagttttg tgtcgcaagc attagttatt taggatatgt aatagacagt      3660
     aaaggtatct gcaccgatcc gtcaaagatt gaatgtatta aaaattggcc accacctagg      3720
     aatttgaaac aaactagagg atttcttgga gtttgcggtt ggtatcgccg ttttataccg      3780
     aattttgccg atctcactta tcctataacg gaactgttgt caacaaaaag aaattttgtt      3840
     tggactccgg aagctcaagc ttctatgaat aagttgaagg atctattaac ttctgcccct      3900
     attctacaaa acccggactt taataagaaa tttttcttac attgtgatgc cagcgattat      3960
     ggtattggcg ctgtacttgt ccaattatca gacgcagagg aagagaagcc tattgctttc      4020
     atgtctaaaa agttaagtcg tgcccaacgc aattatagtg ttactgaacg cgaatgttta      4080
     gccgttatac tggctataga aaaatttagg tgttatttgg aattgcaaga atttgaagta      4140
     gttactgatc actccagttt attgtggcta atgcgtcaac aaaatgtttc tgggagatta      4200
     gctcgatgga tttttcgctt acaacaattt aagtttaata tgtcgcatag aaaaggaaaa      4260
     gaacacttga ttcctgacgc gttatcaaga ttgcccaacc tttcgataga ggcgatagaa      4320
     atgggtccga ttatagatct ggactctgaa gcatttttgg acgatagtta tatgtatctg      4380
     aagaagaaaa tcactgaaaa tccaggcaaa ttcccagata tcaaaattgt aaataaacat      4440
     ttgtatattc gaaccgaaca tgccaatgga gattcttatc aagagaagct ttcttggaaa      4500
     ctatgggtgc cggataaact cagagttgat gttctaaaac aagctcacga tagccacacc      4560
     tcttcacatt caggtatgca gaaaactgtt gacaagatac gtagaactct tttttggcct      4620
     ggtatggtaa aggatgtgcg ggaccatatt cgtcaatgtg acacttgtaa ggagtccaaa      4680
     gcaccaaatt atacgctcag accacctatg ggacagcata ttccaacttg tagacctttt      4740
     caacgtctgt atatcgattt acttggtcct taccctcgta gcaaaaatgg atttgtcggt      4800
     ttattaattg ttcttgacca tttcagtaaa tatcattggt tacaacctct gaaaaagttt      4860
     cgcacggagg atatacaaga atttttgtta aaacagatat ttcattgttt tggagtaccg      4920
     gaaatcatcg ttagtgataa tggtgttcaa tttaaggcaa attcgttcaa ttcttttctt      4980
     actgaactag gcataaaaca tcagtatacc gctttatatt ctccgcaaag caacgcagct      5040
     gagcgtgtta atcgttctct gttagctgcg atccgttcgt atttaaaaaa tcaggatcaa      5100
     acgctttggg atcaacattt aacgagtata tcttgcgcat tgcgatcctc gttgcatcaa      5160
     tctttaggtt gctcaccctt taaagctttg ttcggactgg acatggttac tcatggatca      5220
     gattataaac ttttaaagga attaaagttg ttacaagagc ccataacacc gctcaatcag      5280
     actgaccagt taaacctttt gcgacaggat ataagagaaa acattaagaa agcatatgat      5340
     cgaaatgtag cacagtataa tcttcgcagt aagtctgtct cttttaaaga aggccaagaa      5400
     gtttttcgca gaaatttcgc gttaagcaaa ttctctcaaa acttcaatgc taaattagcc      5460
     cctaaattca taaaatgtcg aatcaaaaag aagctcggaa actgctttta tttgttagaa      5520
     aatatgcaag gtagagaagt aggaacattt cacgccaagg atatacggaa ctaattccca      5580
     ctaatatgct gcctaacgtt gcatattatc gggtgg                                5616
//
ID   Gypsy-18_DWil-LTR repbase;    DNA;    INV; 2208 BP.
XX
AC   scaffold_181039;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_DWil_;
KW   Gypsy-18_DWil-I; Gypsy-18_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181039; Positions  238478  240685.
XX
SQ   Sequence 2208 BP; 710 A; 389 C; 387 G; 722 T; 0 other;
     tgtagcgtgc gctgcacttt caaattttca aatttttaaa cttaacgtct ttacgcgcca        60
     ctttgccaat agcgatcaat caataaataa aaatattggt atcgctcgat cgataaacgc       120
     ataatagggg gatagcgata aatgatctat cgtttttctt gaggtggcaa cgcgcttcat       180
     tttttttttt actaggcttc attttcattt ttaactctga ggcgaaaagt gtgaaaaaaa       240
     aagctgtagt ccaaatcttt ggttataaat catagcaggt atgtaggtta attagaattt       300
     ttaccccgcc gccatctgca tcttactcta tatcctagat tggaaacctt actttttctg       360
     gccaatattc gtgatagctt tcgtttggga agattatttt ctggaaaacc ggcgagtttt       420
     caaataccca tttctggtgc cggagcacgt gcatccgaat tttcggttgt cgttgccttc       480
     tggaattggc attcggacat agagaagaca ccgccaacta aacaccggca gtgccacaac       540
     gattctaagt taaggcttac ggtgcggcca aagtgtctca tttcccgaaa ggtgtcctaa       600
     ccttcggtga accggatttt tgtatggcaa ggttttaaag gcagtggcct acctaacctt       660
     ctgacgttgc tgacccagac aaagtttgtc tttagccaaa ttctggatac tgcttgctgt       720
     tgccctattt agcgcattcc gtgtgaccac ctcgaaagct cctacaaatt tttttttgaa       780
     attaacctcg tttggaacgg aatctttagc tcccgatatc ttcatttctg atcttatttt       840
     taaattttaa ttcctaatca agttaaacaa aaaaaaaaaa gaaagagaat gtaaataagt       900
     ccaatattga atcaattaaa agtctcgtta aggttatatt aaaaatttca agtcgagagt       960
     aacgtaaaat agagtaaatg taaaagccaa gtgagtgaac ggagtttaat ggtggtcata      1020
     aagcgcgaag gagaaatcat catataaaca ccctcccaca gtgcatcgat ggaaggcctt      1080
     tcagcgaata aactatgggg taagtgccta gtgtattaag tagtatccat tcggcgacct      1140
     tcaaacaagt ttttgcgaac tatggaggat ggtagtcaat tgatactctg acttgatgat      1200
     gtaatttctg tttcagcgtt ttgcgatcaa ccagatagtt aaattaaaaa aaaaaaaatt      1260
     gatttccgta aataatgttt gacttgaaga gcaatcaaaa gcaaagagtg aatttgtgcg      1320
     acttgaaaat ttaacataac tttaaagaat ttaaaacaaa aaaaaaaaaa agataaaaga      1380
     aaacttgaaa aagatgaata attacaaaaa aaaaaatgtt aactgaattc ctttaatatt      1440
     ccttctatat ttttttttat tctataatct tctacaataa ttaataatgt ataactagta      1500
     agctctcttt tatactgcta gttttagtcc ctcttattca atagtttaat taactttgag      1560
     ttccatcgtt ttggcaactc tgaaagttca gaatctcaaa atgttgagtc atactagctc      1620
     agctgtttaa aattagtctg taaatatttc tttaaaattt attgtataca acaagaaatg      1680
     cttctatctg aaattataat gaatttgaat atgattgctt aagctttata attaattttc      1740
     ctagtgacat gggtacatga gttgatatct atcagttttt tttgggaatc tttacaaatg      1800
     ccaataaaga ttcatggttg ggagggtata gaactgataa ggtccatcta catcttgacc      1860
     ccagtaacca ctagcttgtg aacaaaagga tacaccttca tttctttcgc ctttttatta      1920
     acatgaattc cttgctgttt tcgtaagtat tttctgtcag tcattctatt ttcatttaaa      1980
     gttagtttca gtagagatcc taataaaatt aaattttata attaaaggta gagattcagc      2040
     aaacaacccc cccaccccgc aagagctacg gaaccagagg atctcgatct gctgcaattc      2100
     acctaccgcc ttctttttgg ttatcgatag ctttatcgtc gctgtgatag gagaaccgat      2160
     tatataaaat tcatggcgcg caacgagaaa ccgaatagga aggttaca                   2208
//
ID   Gypsy-18_HeAr-I repbase;    DNA;    INV; 8344 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-8344
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5566-5566 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2197..7095
FT                 /product="Gypsy-18_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MENYARDGLTPPLPTGKTCSRSTKRKDDSYMYSRKKR
FT                 CRSRSPSRGRPRRKSGHHERRRHRRSGSRLRTTKRKSRSRSRSTSRNRRSR
FT                 YRRDSSHSRRRNNSYFSDSTSNRSDSLQSKTTHSSDEWSTGSSTSSAERES
FT                 RSRSRDSRTYDSRRRHRDRRTKPRRSSHSEMERLVSAISNHSRNTFVGAHD
FT                 IIPKFDPGLKTQTSKSWIKKVNETADMYNWSDKQIIFHALPKLDGLARRWY
FT                 EGLSSVNLSWREWQRKILENFPDDRNYADRLVEMLDRRSKREETLEEYFYD
FT                 KIKLISHCNIKGKDAVDCVIHGIYDSNIRLNAQGANFRSPNKLLRYLRSIT
FT                 AKTFKDNRKTLTQPNNRINKSNFNGKGPDTSKNSRISGIKCFNCSENGHTA
FT                 PRCTKEWQRCVKCNRMGHIAEHCRRDQANKITKTTTDDKKGSSENKVLHIT
FT                 GNNEKTNIYNKMVTINGHQKHAFLDFGSQCTIGKQSLADELSLKLDSKDLL
FT                 HIRGFAFGTIQPIGKAKAEIVLDFVKAEVDIYIVPDEYLSTDLLIGQNFTE
FT                 RPGVVVYKTSTSLTLYSDFPEKVDLLIAEDTTVGKMTNIKIRYANQHTGYI
FT                 YIPGNISYKMDEEIITIPGIYQVGDGVGMLPVINYSGKEVLMRKDKVIARA
FT                 LPIPNIPTLLHTPVLEVNNIIESDSTNSYSYKPLTMDMLNIGADATHDQRD
FT                 RLLTLLNDYRDCFALELDELGRTSISEMHIKLQDDVPISYKPYRLPYTEKL
FT                 VVRNLVNELLDSGIVRESNSSYASPIVLVKKKNGEYRLCVDYRALNKKTIK
FT                 DSYPMPVIDDQLDRLSGKNYFTSLDLKSGYYQIPVAEDSKHLTAFITPDGH
FT                 YEYTRMPFGLVNAPAVFQHMINKALGKDRYDLAMPYMDDLLSPATTIDDGL
FT                 DKLRKILESLRKASLTLNVKKCYFFQTSLDYLGYEVSKDGLRPGSKKIDAV
FT                 ASFPVPTNIHHVRQFVGLASFFRRFIPNFGAIAKPLTSLTKANVPWSWEQP
FT                 QEEAFNTIKAKLIQRPLLALYDPSFITEVHCDASKHGVGGILLQKPDEKSP
FT                 LRPVAYFSKQTTKEEEFLHSYELETLAVVLSLKKFRIYLIGINFKVYTDCN
FT                 ALRTTLTKRDLVPRIARWWLLLQEYNFTIDYRPGESMRHVDALSRNPITSV
FT                 DDPGLLDGDELAIMNIGTTDWLQSVQLADPHLKLVRSILNTDKRDIKDIME
FT                 NYVLRNDKIYRKIGDQLKWVVPNGARWRICQMGHDESGHFSVDKTLDKIQK
FT                 DFWFPKMTKFIKKYVSSCLNCAYNKASTGKSSGYLHPIPKGRTPFHTLHMD
FT                 HLGPFVRSKNGNEYILGIIDGYSKFIFIKPVRNLKSKTTIKVLKDIFCVVG
FT                 VPKIIISDRGTSFTSLLFKRYVQSIGVKHVQNSVATPRANGQIERYNRTIL
FT                 ESLAASNHGQDERDWDMHIENVQWSLNNTRNKTTGVSPSEIVFGKRTTGPN
FT                 EGNILNALREDDSVNTDNDEEPNTEESTDKEPNGNEPSRYELDREKQRSII
FT                 RELANKNIEDSQKQMKLRYDSNKAPTKMFNLGDLVMIPNHHLPATGKSKKL
FT                 LPKFRGPYKISAVLKNDRYEISSIDGLSKRKYKSIYPADQLKKWITFNTDN
FT                 NSDAHDLTDSDSDIN"
XX
SQ   Sequence 8344 BP; 2848 A; 1637 C; 1585 G; 2273 T; 1 other;
     tttcagaagt gacaagtaca catcgctcca cgaacttggt atgttattga acacatttta        60
     taagtagtat aatcgacaaa acaaaacttg ttttctttct tctaagtatc gaataattag       120
     ttaactgcat tactccgtgt acacatttat ttgtgtacgt agaggattga atatagcaat       180
     aatataatta catcgatgtt cagtaaatgg atcgacaaca tttgactatc atatattccg       240
     aattccgaga agccatcata gaataacatg ttgcattcaa acgatttaag aaataccaca       300
     caaatagtac acaattagta acgaaacata taacccaagt aattattcgt aatcatagaa       360
     aatcgacgcg tcaagtatgc atttcggtca gtgggtcgtc ttaggggcgg agtttcctct       420
     agattagtac caagtaaaaa taaaattaaa aataaatagg taatagatag aatcacaaaa       480
     tatacgaagt acttacttat tgaactgttt gtttcgacta gtatctatga aattatagta       540
     atagttataa aacaagctcc cacggtcaag ctcctctatg ttgccgtgcc ctacaaggtc       600
     catagtgtac caaaacaacc ttcatgaaac ttatggagtg caataaaata ttgaattgaa       660
     ttgaaatagc aacacaagtg ttttacagca tgtatgtatc atcgtcatct ccctagacct       720
     ttatttttaa ctacgttggg ctcgtcttcc agtctaatgg gattcacctg ggttatacca       780
     atgttttaca aggatcaact gctctatctg accttctaaa acctgttact aggggtaccc       840
     aataccgctt gcagacccga tgtcagactt actgaattct aactacccgt aacaacaagg       900
     atgttcgatg acagctgaga cttacagtta acacttcctc caaaactcag taatcctggt       960
     gcaagatata ctaagatagt acatttagat ttacaaaaaa aaaaaaaaaa agagttggaa      1020
     tagagtaaac attttaggtt aaacaaataa aaagtattta caaaataatt aataataaaa      1080
     tagcaatggt actctcctga cctggaattg aacccacaca ttcatacctg ataagttggt      1140
     tctttaccca ctagggcacc acaactattt agtagtatgt gtctataaat aaatactaat      1200
     ttatagaaag gatattcctt gatattgata tgatatttct tctattattt tattgataat      1260
     aattaatcat actatgttca ccgtaaaatt acataggcat gcttgtttac tttccttaac      1320
     ccagtcttca aagcaaagtt tattcaaagc tacttaagct aactttatta acatattgat      1380
     ttgatctcaa gtgtggtaac taattagctg aaccttgact aaatcattgt tataaatttg      1440
     agcttgagtt taataaattt gtagcataaa cattaacatc tgaaattatt gttcctactt      1500
     aaatttatag ggtatttgag ctataatgca aaaacttttg tctccatttt tcctttaaga      1560
     ataaaaacaa aaacaataaa taactaaatt tctgaacaaa tttagaacga taaatggtga      1620
     tctataacac agaggaggtt taattcagat acctttcttt agatgcaaca tacaataatg      1680
     tatttagcat ataataattt aaagaaaata aagatttcct ttattgtatt gtataacttt      1740
     agtatggttt ctcttactgc ttctacccca tttgtctcag acatgtaaag atgacttgac      1800
     tgataaatga tgaccgactt ttcatgagag gctctcatgc aggcctattt aaaataaaaa      1860
     acttttgatt aacttttgac tgaattatct aaatatagtt atttatgttt gactttatag      1920
     tgacttatat tttagctatt gggttttcta ttattgtttg cttttgctaa caatcaattt      1980
     actaatcgca ccaatttatt tccaccttcc gccttccacc tttctcttct tgataattat      2040
     tttacaaata tatatttacg tttcatttta tacaatctat atcacttaac catcaattaa      2100
     tcttacaaac ttatccactt aacgaattga acttggaatt tgcattaaaa aaaaaataka      2160
     gagagaaagt aaatatatat atttatcgct aagccgatgg agaattacgc acgtgacggt      2220
     ctcacgccgc cgttacctac gggtaaaaca tgttcaaggt caaccaagag aaaagacgat      2280
     agttacatgt actctcgaaa gaagcgttgt aggtcacgca gcccaagtcg cggacgacca      2340
     cgtcgcaaaa gtggtcatca tgaacgtcgc aggcatcgac gttccggatc taggctgaga      2400
     accactaaaa ggaaaagcag gagtaggtca cgatccactt caagaaaccg ccgttcacgg      2460
     taccgtcgtg actcatctca cagccgccgg cgtaataata gttatttctc agactccact      2520
     agtaaccgat cagacagcct acagtctaag actactcata gctctgacga atggagcacc      2580
     ggctcgtcta cgtcgtcagc tgaacgcgaa tcacgatcga ggtcaaggga tagcagaaca      2640
     tacgactctc ggcgccgtca tcgcgaccgt cgtactaaac caaggcgatc cagtcactca      2700
     gaaatggaaa gactcgttag tgcgattagt aaccacagcc gcaatacgtt tgtaggagcg      2760
     cacgatataa tacctaaatt cgatccagga ctgaaaacgc aaacttcaaa atcgtggatc      2820
     aaaaaggtta acgagactgc tgatatgtac aactggagtg ataagcagat tatctttcac      2880
     gcattgccca aactcgacgg tctagcacga cggtggtatg aaggtttatc gtcagtgaac      2940
     cttagttgga gggaatggca gcggaagatt ctagaaaatt ttccggatga caggaattac      3000
     gccgaccgtt tagtagaaat gctggatagg aggagcaagc gcgaagaaac tctcgaagaa      3060
     tatttttacg acaaaattaa actgataagc cactgcaata taaagggaaa ggacgcagta      3120
     gactgcgtta tacatgggat ttatgatagt aatattagat taaacgcgca gggtgcgaat      3180
     tttagaagcc caaacaagct cctaagatat ctgcgcagta ttactgctaa aacgtttaaa      3240
     gataatcgga agactctaac gcaaccaaac aatagaataa ataaatccaa ttttaacgga      3300
     aaagggccgg atacaagcaa aaatagtaga atttcgggta ttaaatgctt taactgctcc      3360
     gaaaatgggc atactgcacc aagatgcaca aaagaatggc aaagatgcgt aaagtgtaat      3420
     cgtatgggcc atatagcaga acactgtagg cgagatcaag ccaataagat tactaaaaca      3480
     accaccgacg ataagaaagg aagttcagaa aataaagtac tacatattac cggtaacaat      3540
     gaaaaaacaa acatatataa caagatggtg accatcaacg gtcaccagaa acatgccttc      3600
     cttgattttg gcagccaatg tacaatcggc aaacaaagtt tggctgacga attgtcccta      3660
     aaactagatt ctaaggatct attacacatt agaggtttcg catttggaac aattcagcct      3720
     attgggaaag caaaggctga gatagtactg gattttgtga aggctgaggt agacatatac      3780
     atagtgccag atgagtattt aagtacagat ttactaattg gccaaaattt tacggaaaga      3840
     ccaggtgtgg tagtatacaa aactagcaca agcctaactc tatattccga tttccccgaa      3900
     aaggttgatt tgttaatcgc ggaagatact acggttggta aaatgactaa catcaaaatc      3960
     cgctacgcaa accaacacac tggatatata tacatacctg ggaatatatc ttacaagatg      4020
     gacgaggaaa ttattacaat tcctggcata tatcaggttg gtgatggtgt agggatgttg      4080
     ccagtaatta attactccgg aaaagaagtc cttatgcgaa aagacaaagt tatagctcgt      4140
     gcattaccta tacctaatat acctacgctt ttgcatacac cagttttaga ggtaaataac      4200
     ataatagagt ctgacagtac taattcttat agttataaac ctttgactat ggacatgtta      4260
     aatataggtg ccgacgctac gcatgaccaa cgtgatagac tactaacact actgaacgac      4320
     tatagggact gtttcgcgtt agaattagac gaactcggta ggacctctat ttctgaaatg      4380
     catatcaaat tacaggacga tgtacctata tcctataagc cttaccgctt accctataca      4440
     gagaaactgg tagttcgaaa tttggtgaac gagctccttg attctggcat tgtgagggaa      4500
     tccaattcat cgtatgcgag ccccatagtc cttgttaaaa agaaaaacgg cgagtatcgt      4560
     ttatgtgtgg actacagagc cctgaataag aaaactatca aggattctta cccaatgccg      4620
     gtcatagatg accagttaga tcgtttgagc ggtaaaaact attttaccag tctcgacctt      4680
     aagtctgggt actatcagat tcccgtcgcg gaagattcca agcatttaac cgcatttatt      4740
     acaccagacg gacattatga gtacaccagg atgccgtttg gcctcgtgaa cgctcctgct      4800
     gtattccaac atatgatcaa caaggctctg ggtaaggata gatacgatct ggcaatgcct      4860
     tacatggatg atttgttatc cccagccacg acgatagatg acgggctgga caaactcagg      4920
     aaaatattgg agtcgttacg caaagcaagt ttgacactca atgttaagaa atgctatttc      4980
     tttcaaacat ctttagacta tctggggtat gaggtatcca aagacggcct aaggcctgga      5040
     agcaagaaaa tcgacgccgt cgcgtctttt ccggtcccaa caaatataca tcatgtgaga      5100
     caatttgtcg gtttggcaag cttcttccga agatttattc cgaacttcgg tgctatcgcc      5160
     aagccgttga ctagtctcac gaaggccaac gtgccctggt catgggaaca acctcaagaa      5220
     gaagcgttta atacaattaa agccaaattg attcagcggc ctttattggc cctttatgac      5280
     cctagtttca ttacagaagt acactgcgat gcaagtaagc acggagtagg aggcattcta      5340
     cttcaaaaac ccgatgaaaa gtcacctctg agaccggtag cttatttcag taagcagact      5400
     actaaggaag aggagttttt gcactcctat gagttagaaa ctctagccgt agttctatcg      5460
     ttgaagaagt ttcgcatata tctcatcggt attaacttta aggtatacac cgactgtaat      5520
     gcccttagaa cgacactaac aaagagggac ttagttcctc gaattgcacg gtggtggctt      5580
     ctgcttcagg agtataactt tacaatagac tacagacctg gagagagtat gagacacgtg      5640
     gacgctttaa gccgcaatcc cataacatcg gtagatgacc ccggattgtt ggacggggac      5700
     gaattggcga tcatgaatat tgggaccact gactggttgc agtcggtaca attggcggat      5760
     ccacatctga aactagtcag atcgatacta aacaccgata agagggacat aaaggatatt      5820
     atggaaaatt atgttttacg gaatgataag atataccgaa aaattggaga tcaacttaaa      5880
     tgggttgtcc ctaacggggc taggtggcgc atctgccaga tgggccatga cgaatctggg      5940
     catttctctg tagataaaac cctcgacaag atacaaaaag atttctggtt ccccaaaatg      6000
     acgaaattca tcaaaaaata cgtgtcgtcg tgcctcaact gcgcttataa caaagcgtcg      6060
     actggcaaaa gcagcggcta cctgcaccct atccccaaag ggcgcacccc ctttcatacc      6120
     ttacatatgg accacttagg tccatttgta agaagcaaaa atggaaacga atacatttta      6180
     gggattattg acggatatag taaatttata ttcattaaac cggtacgaaa tctcaaaagc      6240
     aaaacgacta taaaagtttt aaaggacatt ttctgtgtgg taggtgtccc aaaaatcata      6300
     atcagcgata ggggaacaag tttcacatcc ctattgttta aacgatacgt ccagtctata      6360
     ggtgtaaaac atgttcaaaa ctccgtggca accccgcgag caaatgggca gatcgagaga      6420
     tataaccgga ccatactgga gtctctagcc gcatccaacc acggtcagga tgaacgagat      6480
     tgggacatgc acatagaaaa tgtgcagtgg agcctgaaca atacccgaaa caaaactact      6540
     ggagtctctc cgtccgaaat cgtgtttggt aaaagaacga ctggacccaa cgaagggaac      6600
     attcttaacg ccttacggga agacgacagc gtaaacactg acaatgacga ggaaccgaat      6660
     acggaagaat caactgataa agaaccgaat ggaaacgaac cgagtagata cgaacttgac      6720
     agagaaaaac aaagatctat aattcgcgag ctagccaata aaaatataga agatagtcag      6780
     aaacagatga agttaagata tgacagcaac aaggcaccta ccaagatgtt taatttaggg      6840
     gacttagtca tgatccccaa ccatcatctc cccgcaaccg gaaaaagtaa gaagcttctt      6900
     cctaaattta gaggaccata taaaatatcg gcggtactca aaaatgatcg gtatgaaatt      6960
     tccagtattg acggtctgtc aaaacggaaa tataaaagca tatatcctgc tgatcaacta      7020
     aagaagtgga tcacgtttaa tactgacaac aatagtgacg cacacgacct aaccgacagc      7080
     gactccgaca ttaactgaat agtgatttct gacacttact cgtttactgt atcaaacact      7140
     taaataaaac tactcttaca gattttatcg cggttttatt atattattag ctgaaactaa      7200
     tacttatatg tatcactagc ttatgatatc tttcccacca gtttactcct ttacctaata      7260
     ttttacaggc atcacacatc tacatacatg tgtgtgtatt aataatatgt acatacaaca      7320
     ctcactatta taatatagta gatattacct agataacttc ccccttcctc taaggctaca      7380
     ttccaggata taccggagtc aagggaggaa taaaatctgc cactacgttt actttgttgg      7440
     tggaaatgga tacaaaccat gtacgtataa attggtggtg aaggtcacca accgacattt      7500
     ataacaccta attgtctgag tgatgatgac tgaaggatac cgtagcgtaa ggtgctcact      7560
     gagactagtg aaggataccg aaacgcgcgg tgctcgtcac attacaaagc aaacattgga      7620
     gaaggatgct catttattgt ggcgctctcc tatgacgttc aactcgttaa agaatactgt      7680
     ggcgtaaggt gctcactgaa actagtgaag gataccgaaa cacgcgatgc tcgtcacact      7740
     acaaagaaaa cgttggagaa ggatgcttat ttatcggggc gctctcctaa gacgttcaat      7800
     tcgtcaaact acaagacggc actaatcgat gcagatttgt atcttactta ctagttggcc      7860
     tctctaataa tacgttagag aaccattaat tgttattgta actaactaat ctaataaatt      7920
     aaatattaga gataacacta caaatcaacc tcaagtattt tacaataatt gtaaagataa      7980
     taatatatta tattttactt ctggaaatca taaaattcac tgaattagtg gccagacatt      8040
     aacttaaact tgtttgactg acaccaaaac ctaactaatg aatttaattc tcatatccac      8100
     agacccttta ctggattaaa ccaaccgaat ctctggatga ctacaaaagg cggatggaga      8160
     aataaacttc aaaagagcgg aagaaaatag acaaaattat tataggagta aagcagttaa      8220
     cttgaagaaa ttatggaaac tgatttactt cacaatcatt atcatgaaac tgtatgagga      8280
     cataccacgt acagctcgaa tggccgacac ggaatagggt cattccgtta acaggacggc      8340
     cgtc                                                                   8344
//
ID   Gypsy-18_HeAr-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-201
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5596-5596 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 201 BP; 71 A; 24 C; 47 G; 59 T; 0 other;
     tattagctgt ataacttaaa ttattcaaaa agtaataatt taaaagaata agctggcaac        60
     cccaagagag agcgggggtg aagaggcgcg gaggcggcca ttcgaagagg catggcggtt       120
     gcgatattgt gaaattgtga aaattgatta aattcgtatt atacatataa tatcattgaa       180
     ttcgtaagtg tttttctaat a                                                 201
//
ID   Gypsy-18_LH-I repbase;    DNA;    INV; 4412 BP.
XX
AC   ADOQ01011432;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_LH_;
KW   Gypsy-18_LH-LTR; Gypsy-18_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4412
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011432; Positions    5056     645.
XX
CC   Positions [1889-2398] - Reverse transcriptase
CC   Positions [3434-3910] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           362..3982
FT                 /product="Gypsy-18_LH-I_1p"
FT                 /translation="MTDRQGKIETLTAAEIRNILKTKGLSIGGTKAEFVAR
FT                 LKVADPEGEWTSAINVDESNQSQNDVEDTGAASQSHQRERQLMAELRRAQQ
FT                 EIETLRRMRSSECDGATTSQVEQRADERAASPTITTKVNMTTIADLLSYFD
FT                 GDSERYETWENQVVFLKTAYRMESNMVKLLIGMRLRGKALEWFHSSPAYIQ
FT                 MTADELLAELRDMFYLPPNRIMLRRRFEGRTWQKNETFRDYVHQKIILANR
FT                 ISINEEDVVGYVIEGIPDAHLRDLARAHRFPSKESLLLAFEQITLKDGSHV
FT                 TTGQKTKFNDDRRKNDKREHTSNVTGEKKEMNDDKKRGMIKRCFNCGSRKH
FT                 MSVACPEREKGSKCFECNEYGHVASKCPKKNKAEANCLMTKTKTRKQLKNV
FT                 KINDVLIPAVLDTGSDLTIMRANQYIKLGTPRLICKQTPFRGIGEGTNMTL
FT                 REFNAKITVDDHTYDILIQVVSDDLSRNALLIGRNFLDEVDLRVKRGKATI
FT                 IPCSEIFDNDVPEVCKIDAFDECEIDPVDLSSINNEKTRKVVRGMINEYRP
FT                 IKTREVEVKMTILLKDEEPVYQRARRLSSVEKDDVNAQINEWIQSGIAKSS
FT                 VLDYASHSAGKEERRVEPNLRRLSCVVLTYIDDVIIPAADCESALMNLRRV
FT                 LSVASQTGLEINWKKCNFMQRKVEFLGHVIEDGRVQPSQRKTKAVQKFPKP
FT                 ENMRKVQSFLGLTGYFRKFIPGYSLIARPLTNLLRANTKFRFEKDQVNAFE
FT                 RLKVTLSNKPVLSLYRLKAETKLHTDASMHGYGAILLQRDNNDNCLHPVFY
FT                 ASGKTTDLEERYTSYELEVLAVVKALVKFRVYLLGIEFKIVTDCRAFALTM
FT                 NKKDLCVRVARWALQLEEFNYTIEHRPGRNMAHVDALSRNPLPTCLLVDED
FT                 ESAVTAKLRRAQETDPEIMRVMWLAEQGKIEGYAIRDGLLFKDDGVDVRLV
FT                 VPKSMAYQVIRQAHARGHFAAGKTEAIVKRDYWIANLRGKTEKVVCNCIDC
FT                 ILAEKKQGRQEGFLNTIDKGDVPLDTFHVDHLGPLASTKKNYRHIFVVIDS
FT                 FTKFTWLYTTKSTSTAEVIDKLRKQSIIFGNPRRVVSDRGTAFTSNDFKEY
FT                 CQRENIQHVLTTTGIPRANGQVERVNRTLIPLLTKLSSPKSDEWYKHLSIA
FT                 QQYVNTTPSRSTGTTPFQLLFGVQAKLRDDPEIRGLLEEEWITAFQEK"
XX
SQ   Sequence 4412 BP; 1440 A; 833 C; 1171 G; 968 T; 0 other;
     aacttggtgt cagaagtggg atcagtggag agaaaaaaaa acgcgtgaat agtgacaaaa        60
     acgacgacaa cgagaatttc caacaacgac gacgagtgct tctgaaacaa cgaagatttc       120
     gagaaaacga cggtgtaaac tcttgaaaaa cgacgataag aatttttgca atgacgtagc       180
     gaaagttctc gaaaacgacg aagacagcaa gaagcaacga gaatcttcga gaaggtacga       240
     cgaacgttct cgaagactgc gcagtagacg agtgcgcatt gtgttgagtg tggtgtgaca       300
     gcgtttgttt acgagggaca cataagaagc gttggaaaaa acggcggata tacgaaaaac       360
     aatgacggac agacaaggaa agattgagac gttgactgcg gctgaaataa gaaatatact       420
     aaagacaaaa ggcctgagta taggtggaac gaaagcagaa tttgtggcac gactaaaagt       480
     ggctgacccc gagggagagt ggacgagcgc gataaatgtc gatgagtcga atcaatcgca       540
     aaacgacgtg gaggacaccg gtgcagcatc tcaaagtcat caacgagaaa gacagctaat       600
     ggcagagtta cgacgcgctc aacaagagat cgaaacttta cggcgtatgc gttcctccga       660
     atgcgacgga gccacaacga gtcaagtcga acaaagggca gacgagcgtg cagcatctcc       720
     aacgattacg acgaaggtaa atatgacgac gatcgcggat cttttgagct atttcgacgg       780
     agactctgag cgatatgaga cgtgggaaaa tcaagtcgta ttcctgaaaa cggcgtaccg       840
     aatggagagc aacatggtga agcttctcat cggtatgagg cttagaggta aggcgcttga       900
     gtggttccat tctagcccag cgtatataca aatgacggcg gacgagttgt tggcggagtt       960
     gagggatatg ttttaccttc ccccaaaccg aatcatgctg cgacggcgct ttgagggacg      1020
     cacctggcag aagaatgaga cgtttcgcga ttacgttcac caaaagatta ttttggcgaa      1080
     tcgtatctcg attaatgaag aagacgttgt aggttatgtc atcgaaggga tcccagacgc      1140
     acacttacga gaccttgcgc gtgcgcaccg atttccatcc aaagagtcgt tgctattggc      1200
     gttcgagcaa atcacgttga aagatggcag tcacgtgaca acgggccaaa agacgaaatt      1260
     caacgacgat cggcggaaaa acgacaagcg cgagcacacg agcaatgtga cgggtgagaa      1320
     aaaagaaatg aatgacgata aaaaaagagg tatgataaaa cgttgtttca attgcggtag      1380
     tcggaagcat atgagtgtcg catgtcctga gagagaaaaa ggttcaaagt gtttcgaatg      1440
     taatgagtac ggtcatgtag cgtctaagtg tccgaaaaaa aataaggcgg aagcgaattg      1500
     tttaatgacg aaaacaaaaa cgcgtaaaca attgaagaac gtaaaaatta atgatgtact      1560
     tattccagct gttctcgata cggggagtga tctaacgata atgcgggcca atcagtacat      1620
     taagctaggc acaccgaggt tgatttgtaa acaaacacca tttcgaggta taggcgaagg      1680
     cacaaatatg actctaaggg aatttaacgc aaaaattaca gtcgatgacc acacgtacga      1740
     tattttgatt caagttgtct cagacgatct gtcgagaaac gcgttactaa tcgggcgaaa      1800
     tttccttgac gaagttgact tacgcgtaaa acgaggaaag gcgacaatta ttccgtgtag      1860
     cgaaatattt gacaacgatg tacccgaagt atgtaaaatt gatgcgtttg atgagtgcga      1920
     gatagatcca gtagatttat cttcgataaa caacgaaaaa acgcgtaaag tagtacgagg      1980
     aatgattaac gaataccgac cgataaaaac gcgtgaagta gaggtcaaaa tgacgatttt      2040
     gttaaaagac gaagagccgg tttatcagag agccagacga ctaagcagcg ttgaaaaaga      2100
     cgatgtaaac gcacaaataa acgagtggat tcagagcggt attgcaaagt catcagtatt      2160
     ggactacgcg tcccatagtg ctggtaaaga agaaagacgg gtcgaaccga atttgcgtcg      2220
     actatcgtgc gtagttctta catacataga tgatgttatt attccggcgg cagattgtga      2280
     gagcgcatta atgaatttac gacgagtgtt gagcgtagcg agtcaaacgg ggttagaaat      2340
     taattggaaa aaatgtaatt tcatgcaacg aaaagtcgag tttttggggc atgttatcga      2400
     agatggacgc gtgcagccct cacagcggaa gacaaaggct gtgcaaaaat ttccgaaacc      2460
     tgaaaatatg cgtaaagtcc agagtttcct cggtttaact gggtacttta gaaagtttat      2520
     acccggatat tctctcattg cgcgaccgtt gacgaatttg cttagggcaa atacgaagtt      2580
     ccgattcgaa aaggatcagg tgaacgcttt cgagcgcttg aaggtcacgt tgagcaataa      2640
     acctgtgtta agtttgtatc gtctgaaagc agagacaaag ctgcacaccg atgcgtctat      2700
     gcacgggtac ggcgcgatat tactacagcg cgataacaac gacaactgtt tacaccctgt      2760
     attctacgcg agcggaaaaa caacagattt agaagagcga tacacgagtt atgagttaga      2820
     ggtgttagct gtggtcaagg cgttagtcaa gttccgagtt tatctgttgg gtattgaatt      2880
     taagattgtg acggactgca gagcttttgc gcttacgatg aataaaaaag acttatgtgt      2940
     acgcgtggca aggtgggcgc ttcagttgga ggaattcaac tacacgattg agcatcgtcc      3000
     tggcaggaac atggcacacg tggatgcgtt gagtcgcaat cctctgccga cgtgtttgtt      3060
     agtggacgag gacgaaagcg ctgttacggc aaagttgagg agagcacaag aaacagaccc      3120
     cgaaattatg agagtaatgt ggctggccga gcaaggcaaa attgagggct atgcgattcg      3180
     agacggttta ttatttaaag acgatggagt tgacgtccgg ttggttgttc cgaaaagtat      3240
     ggcttaccag gtgatacgac aagctcacgc aagaggtcat tttgcagcag gcaagacgga      3300
     ggcgatcgtg aaacgagact actggattgc gaatcttcgg ggaaaaacgg agaaggtcgt      3360
     ttgcaactgc attgattgta ttttggctga gaagaagcaa ggacgacaag aaggattttt      3420
     aaacacaatc gataaaggcg atgtaccatt ggacaccttt cacgtcgacc atttgggtcc      3480
     attggcttca acaaagaaga attatcgaca catttttgtg gtgatcgaca gttttactaa      3540
     attcacgtgg ctctacacga cgaaatcaac gagcaccgcc gaggtgatcg ataagctgcg      3600
     taaacaatcg ataatatttg gcaacccaag acgcgtggtc tctgataggg gaactgcatt      3660
     cacatccaac gattttaagg agtactgtca aagagaaaac attcagcatg tgttaacgac      3720
     gactggcatc ccaagagcga acggacaggt ggagagggta aatcgcaccc tcattccgtt      3780
     gctcaccaag ctgtcctcac cgaaatctga cgaatggtac aaacacctga gcattgcgca      3840
     acaatacgta aatacgacgc ctagtcgcag cacaggtacg acgccttttc agttgttatt      3900
     tggagtccaa gcgaagctcc gagacgatcc tgaaatacgg ggactgctcg aagaagagtg      3960
     gattacagcg tttcaagaaa agtgagatga aataagatgt agcgcgaaga agaaaattgc      4020
     acagatacaa gaggagaatc aacgaagtta caataggaag aggaaaaaag ccaccatgta      4080
     tcgcgaaaac gacttagtcg ccattaaacg aacgcagatc gggccaggta tgaaattttc      4140
     aaataagtat ctcggaccct acgaagtaac gagaaaattg cgaaacgatc gttacgtagt      4200
     cagcaaagtt ggcgaacacg aaggaccgtt gcaaacagca tcagcggcgg accatatgaa      4260
     gccgtgggtg gaaaacgtag attccgacga caaatccgaa tccgaaaatg ttgatgagtc      4320
     tgagcgtgga aagtaggacg cgcgatcagt acattcgaga acgaatgtaa gtcagaatgg      4380
     ccgattgtag ggtgcaatta tttgcgtgtg tg                                    4412
//
ID   Gypsy-18_LH-LTR repbase;    DNA;    INV; 333 BP.
XX
AC   ADOQ01011432;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_LH_;
KW   Gypsy-18_LH-I; Gypsy-18_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-333
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01011432; Positions     644     312.
XX
SQ   Sequence 333 BP; 103 A; 64 C; 89 G; 77 T; 0 other;
     tgtgtatgtc gagagtgaga agactgagcg cgcggatctg gaatgtatga gtgtatgtat        60
     gagcgtgtac gcgtgcgaga gaagcgctat tgccattttg ggaagaaggg gggaaaagct       120
     cgcggagcgc gggcgagaaa agacaagaac gagtcacgta cgagcctcca gagcgcaagg       180
     tgttatgtaa gcgcaaacga ggaatctaaa tattataatc acatcattaa attaatcatt       240
     ttccgtcgac aagtgttgtc attttcaccg aactctccgc taacccaaat aatcggtcct       300
     gttaaaagaa aaatacattg ggccatctct aca                                    333
//
ID   Gypsy-18_LMi-I repbase;    DNA;    INV; 4444 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4444
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(574..2523,2527..2829,2963..3997)
FT                 /product="Gypsy-18_LMi-I_1p"
FT                 /translation="MVRDVLICFAPDLDVRKQALQSDDPSLAEVLRIACAF
FT                 EVSEAVGSQLSAWGEVSSVADSAQLSAAPVSSVAVVASPSPPSLPTPRRSP
FT                 VSYGRGERRRASPASESEPISCLSCGASHSRESCPHRRATCNRCGKFGHIA
FT                 RVCRSSARGRKRTSHPRDFGASPMDINKVVPVGVQPPKLFIDLRILRKTVT
FT                 LQVDTGATTSLLSSATHQALGSPTLSPAPRALVGYGGHPIPLLGSFVAEAT
FT                 YQNVSRAVPFVVVNSATATNIFGLDAFHAFGFTITDSVCLVSDQIPYESLT
FT                 QLRAEFSSLFAPGLGCAKNFRATITLKNTARPVFCRARPLPIALRGAVKSE
FT                 LDRLTAEGILRPVTASEWASPLVVIRKPSGALRLCGDFKKTVNSHSIIDSF
FT                 PMPRPAELIDRLSGGQYFSKIDLAEAYLQLPLDDASKQALVISTPFGLYQY
FT                 QRLPFGVASAPAIFQRFLEQLLAPVPCCVNYMDDIVVTGSTAADHIANLRS
FT                 LFSVLEGAGLRCNFQKSSFFQPSIEYLGYEVSRSGVRPVAITCVRSQIFPV
FT                 LLPFKNFKYSWARSPIITASSRRQPQWLTPCTNCCVRASRSTGLQLASGLF
FT                 NHLKRPSLRLHASLHTPRGSRLWWRRRLPARCGGGAGTSVPRWVGAPVGVC
FT                 INSYGGAAPVFPGGQGGPSHRFCSKKILCLSLWVKVHPIHGPPPISVFVPP
FT                 VGGSSGQGSPSSSTLGLVPLSFSLRDTVPLDGSSRQCRRPIAPPGRPRPGL
FT                 SKAGRSVLRVGHQTLSAIIMQFVTALAPTRAFTSVHGRRLPPSGGSSVIAP
FT                 PDSDLLHRDHWGISRTKMLARRHVYWPGIDGDITRLIAGCSSCASQQAAPR
FT                 SSLSPWPTPSAPWERLHVDFAGPFLDSYWLCVIDAYSNFPFVVRLASTSAE
FT                 VTTHSLLKIFSIEGLPAALVTDNGPQFTSQHFRDFCSTHGIHHVLAPPFHP
FT                 QSNGAAERFVRTFKTQMRKYVAHLSVEEALLRFLSSYRSTPAVSRAPLSSF
FT                 TAALMDAVVPLASGPSRTPPRPLSRFAPARLSGLEATAAILVGSRPWSFGG
FT                 VAVVSVRSVLLLDPHPPPRSAPGPPSSSHTYGPFLLFRV"
XX
SQ   Sequence 4444 BP; 746 A; 1378 C; 1205 G; 1115 T; 0 other;
     gtggcgacga ggtttatggt agcgtggtct tcctgccgca gtcatggcag agcaacttag        60
     cgcgttgctg acgaatcttc agtcgttacc ggaagttttg gctcaacaga atgcttccct       120
     cacggcgtct attgacacct tgactagggc tgtgacacaa caggtcgggt tgcggtcttc       180
     tgtgcccgtt cctccgtttc ctccctttga cgacaatgcc gaggattggt ccgactacga       240
     acagcgttta cgccaacact tcgtagcctt ccaggtgtgt gatgaaggta agcaaaaagc       300
     ttatttcctt tcgtggctct cgcctcgtct ttttcgtttg ctgggcgatt tggcgccgct       360
     tcagacgcag gcatccctgt ccttttcgga tatctgttct ctctttgcgg catattttcg       420
     ccgccactct cacgtggtgt cggcccgcat atctttctac cgttcgcgga aacagccggg       480
     tcagtcgtac cgcgctgggc cacggaactg caggggctgg cccgtcgtcg tctgtttcgg       540
     tccgagccgc acggtgattc gtatgcggac tctatggtcc gcgatgtttt gatttgtttt       600
     gctcccgacc tggacgttcg caagcaggct cttcaatcgg acgatccctc attagcggag       660
     gttttgcgta ttgcgtgcgc atttgaagtt tctgaggctg tggggagtca actttccgct       720
     tggggggagg tatcctcagt tgccgattcg gcccagttat ccgcggcgcc ggtttcttca       780
     gtggctgttg ttgcgtcgcc ctcccctccc tcccttccga cgccgcggcg ctcgcctgtg       840
     tcgtatgggc ggggggaaag gcgacgcgcg tcgcccgctt cagagagcga gccgatttca       900
     tgtctttcgt gcggggcgtc ccattctcgg gaatcgtgcc cgcacagacg ggccacgtgt       960
     aatcgttgtg gaaaattcgg acacatcgcc cgagtgtgtc gctcctctgc tcggggccgc      1020
     aaaaggacct ctcaccctcg cgatttcggc gcgtcgccca tggatattaa taaggttgtt      1080
     cccgtcggcg tacagccgcc gaaattgttt atagacctcc gcattctgcg gaaaactgtc      1140
     acgcttcaag tggacactgg cgcgacgaca tcgcttctaa gttcggctac tcatcaagca      1200
     ttaggctccc ccactttaag tccggcgcct cgcgcgttgg ttggctacgg cggccaccct      1260
     attccactat tggggtcgtt tgtcgccgaa gctacatatc agaatgttag ccgcgcggta      1320
     ccgtttgtgg tagtaaacag tgcgacggct acgaatatct tcggcctcga cgctttccat      1380
     gcttttggct ttactattac cgattctgtc tgcttggttt ccgatcaaat tccgtacgag      1440
     agtctcacgc agctccgcgc ggagttctcg tccttgtttg cgccgggtct tgggtgtgct      1500
     aagaattttc gggccactat tacacttaaa aatacggctc gccccgtctt ctgtcgggct      1560
     cggcccctcc cgatcgccct ccgcggcgct gttaaatctg aattagatcg cctgacggcg      1620
     gagggtattt tgcgtcctgt cacagcaagc gagtgggcct cccctctagt tgtcatacgc      1680
     aagccctcag gggccctgcg tttatgtggc gactttaaga aaactgtaaa ttctcactcc      1740
     atcattgatt cttttcccat gcctcgccca gcggaattga tagatcggtt gtcagggggc      1800
     cagtattttt cgaagataga tctggcagag gcttatctcc agttgccttt agatgatgcc      1860
     tccaagcagg cgctggtaat ttctacgcct tttggcctat atcaatatca gagattgcca      1920
     ttcggggtgg ccagtgcccc cgcaatcttt cagcgttttt tggagcagtt gctagcaccg      1980
     gttccctgtt gcgtgaacta catggatgat attgtggtga cggggtccac agctgctgac      2040
     catattgcca acctccgctc cttgttttcc gttctggagg gggctggcct ccgctgtaat      2100
     ttccagaaat cttctttctt ccaaccgtct atcgagtact tgggctacga ggtatccagg      2160
     tcgggggtgc gtcccgtggc gatcacgtgc gtgcggtcgc agatcttccc cgtccttctt      2220
     ccgttcaaga acttcaagta ttcctgggca agatcgccta ttatcaccgc ttcctcccgc      2280
     aggcagccac agtggctcac cccctgcacc aattgctgcg taagggcgtc ccgttccact      2340
     ggtctccagc ttgcgagcgg gcttttcaat cacttaaagc ggccctcctt gaggctccat      2400
     gcctcgctgc atacaccccg ggggtcccgc ttgtggtggc gcagacgcct cccagcacgg      2460
     tgtgggggcg gtgctggcac atcggttccc cgatgggtcg gagcgcccgt tggcgtttgc      2520
     atctaaaact cttacggagg cgcagcgccg gtattcccag gtggacaagg aggccctagc      2580
     catcgttttt gctctaaaaa aattttatgt ttatctctat gggtcaaagt tcaccctata      2640
     cacggaccac cgcccattag tgtctttgtt ccacccgtcg gcggctcttc cggacaaggc      2700
     agcccatcgt cttcaacgct gggccttgta cctctctcgt tttcattacg agatacagta      2760
     ccgctcgacg gctcatcacg ccaatgccga cgccctatcg cgcctcccgg taggccccga      2820
     cccggtcttt gatgccgaag agcttttgtg ttttgcagtt gacgagtcgg cagtagagta      2880
     gtcccggttt ccctatcaat agctcacgga tcgcggaggc tacgctgctg accctgtcct      2940
     ccgggtcgtc cttaacgggt gaagcaaggc tggtcggagc gtcctccggg tcgggcatca      3000
     gaccctctcc gcaattatta tgcaattcgt caccgcctta gcacctacga gggcatttac      3060
     ttctgtccac ggaagacggc tcccaccgag tggtggttcc agcgtcattg cgccgccgga      3120
     ttctgatctt ctacatcggg accactgggg catctcccgc acaaagatgc ttgcccgccg      3180
     acatgtatat tggccaggca tagatgggga cataactcgc ctcatagcag gatgctcttc      3240
     ttgtgcgtcc caacaagcag ctcctcgctc atctctctct ccatggccca ctccgtccgc      3300
     accttgggaa cgactccatg tcgattttgc ggggcccttc ttagatagct attggctttg      3360
     cgtcattgac gcatactcca acttcccgtt cgttgttcgc ctggcctcca cgtccgcgga      3420
     agttaccaca cattccctgt taaagatatt ttctattgaa ggtctcccgg ccgcattggt      3480
     gacagataac gggccacagt ttacttcaca acactttcgc gatttttgtt ctacccatgg      3540
     gatccaccat gtcctggccc cacctttcca cccacagtca aatggggcag cggagaggtt      3600
     tgtccgcact ttcaagacgc aaatgcgcaa gtatgtggcg catctttcag tggaggaagc      3660
     cctcctccga ttcctgtcat cctatcggtc caccccggcg gtcagcagag cccctctgag      3720
     ctccttcacg gccgccctca tggacgctgt tgtccctctt gcatccgggc cctcccgcac      3780
     ccctcctcgt cctctgtcac gttttgcccc ggctcggctg tctgggctcg aggctacggc      3840
     cgccatcctc gttgggtccc ggccgtggtc gttcgggggc gtggccgtcg tctctgtgag      3900
     gtccgttctc ctactggatc ctcacccgcc accacgatca gctccgggtc cgccatcctc      3960
     ctcccacacc tacggtccct tcctcctctt ccgggtctag ccccctctgt cggagcgcca      4020
     tcagggacag ttctctacca acttcatttc cgcggacatt ggcggggggc gaggggattc      4080
     ccgccaccgt cggggtccgg ggcccacttc cccgccgcag ccccagcggc cagctccaag      4140
     gagtggacag ctccggtcgc cggcagtggg ggcaccttgc gccagccgac gggggcccga      4200
     gttgccaatg gaagtgccac aggagggggg aatggaggac ccaccgccat cgccagtgct      4260
     gggagcagca agacatcgct cgcgagggcg aacccctcgt cgccaaaggg gttccgtccg      4320
     tacgaggtgg ttccggctag ggagtggatg gagccaccag acgatcggat ggaggtggaa      4380
     gagtcccagc agccagactt ccaccgcctt ccggattccg gcccctcgcc ccaaggggga      4440
     ggga                                                                   4444
//
ID   Gypsy-18_LMi-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-235
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 235 BP; 42 A; 66 C; 78 G; 49 T; 0 other;
     tgttatggcc tagcgggcca ttcagatcgc gcgcctgtat tgtgctccgt ggctggcgcg        60
     gcccggccga gatagttccc ggcctagcca caggagggca cggtcgtcta aacagctgac       120
     gtgagctgcg cgccatctgc tggcggcgcg ctgtcaaacg gccggagtga cgccgggcat       180
     tcgacgagtg atgcggaacg agcaattgtg tttacgacaa acagtgtttt cttca            235
//
ID   Gypsy-18_MeUr-I repbase;    DNA;    INV; 3344 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-3344
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3052-3052 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 3344 BP; 859 A; 689 C; 792 G; 1001 T; 3 other;
     tcagaastgg gatacggttc tcacgtgccc tgatccgttc caaagcagat tggccattca        60
     atttaaaaaa tcttattttt aattttttaa gagtgtacaa gtggtaattt tatgtggtaa       120
     ggtgataaaa tctggtgagt acgttccagt ttgattactg tagaagacga tagcgtgttt       180
     tcaaataatt gtttatgtag ctttgtagtt tactcgatat ttttgcctac cctcaagtta       240
     attggcaatt tttcttttat tttatttgtt ttgttcaatt aactattaaa gtacttctta       300
     ttacccttat acattggtga aagtgtagat atgccaaaca atagccacaa aaggagaagc       360
     cgttctaaga gccgtgattc gcattctgat attcataatg agaatcctcc tcgacataac       420
     tcgcgatcta ggcatacccg caaacgaggt agatcttcta acaatgtact atctgaatgc       480
     agcaaatact ggatcgattg acatcattgg agcaacgacg ccggcccccg ccacgacaag       540
     cgagcggtgt actcccgcgg cgacggtggc cgggcctgcg gtactgcggc agccaccgcg       600
     ccgcgctgcg actgcggccg ggtctgcgac gccgacagtg caatgggcgc ggagaatgcg       660
     tcaggggccg tggcttctca tcctcgccgg gtccttccac cagtgctcac ctgatcgcga       720
     cgctggcgcc gccgatcgca taatcgaggc tattcggtca atcaacacga cggtgagatc       780
     taaccaatct tatatttcga actttgatcc aagcatcaac gatatagaca aatgtctgaa       840
     gggtgatgct aggacttggc tcaattagtg ggttaccagt gaaccctagt gttcgggaca       900
     gtgtaattgc gattctaagc cgagcaagca tttcatcgaa gttatgatca ctgcttctga       960
     cagatacccc acatacgtcg agtttgctcg cctcgctact aggattgcgc atattagagg      1020
     gctgagcgat gaagtaattt cagcaatagt ggtacgaggt gtcacagatc ctcaaatcgt      1080
     gcttcggcga ctaatgcgaa attgatgccg aatcaatttg tagttattgt cgatatacgt      1140
     taaatgaaat actccagctc ataatatgaa tctagctata cctcacgtaa tgacatcgtt      1200
     tttcagaatc aaataatata agtacccgta aaacggtaat tctggtggca aatgttttcc      1260
     gtgtggtctt tttggtcact tgcatgcctt tttgtaagaa gcctggacac aaagttgagt      1320
     cgtgttttgc aaaacaaaaa tctgagtccc gtaataaaaa cgtcaacttt tgtcctaaaa      1380
     cgaaattact cataatggta atgttgttgt ggcggttata caggggtccc tattgatatc      1440
     cttattgact gcggttgatg tgtattgttc agttatacat ctttattaaa atattttaga      1500
     tgtgctcgca aacctgcttt tagagttttg agaggcatta gtggtcggga agtcgaatcc      1560
     actttttttt gacactttgc ctatagagtt taatgaaata actctggaag tagacctgca      1620
     cgtcgtgtcc tccgaataca tgaatacacc tgttatcatt ggtacggacg ttcttaatag      1680
     ggagagggtt cgatatattc gaactcgcga ttctcagtta attatgaggg aaacagttga      1740
     cccaaagaat gttatggtcg tacattctga taatcaatcc cgattaatac aattcttgtg      1800
     agtgctcgag tctggtgaaa ttctggtgta tatcgacgat gttctgatac taagcaaaac      1860
     aattgagcgt ggatttaaat tattacgaga ggttctcacg gttttgacta cggctggttt      1920
     ttccataaat ttacgaaaat tttcgttttt gtgcacggaa attgagtatc tcggttgacg      1980
     tataagtcaa ggtcaggtta ggccgagtca agataaagtt aaagctctaa ttgaatccgc      2040
     tgaacccaaa aacgtgaaac aggtccgaca gttcatgggt ctggccagtt attttcacag      2100
     gtacagagga gaaagcctcg tcgtactttt gaacccaact ttttggtttt ggtcaagaaa      2160
     caagcgcagt cgactggcaa gttggactcc ggcatgcgcg gtccttatcg cgtggtaaag      2220
     acgctgccgc atgggcggta cgaattgcgt ctcctggttg gctcctacag caaaccaact      2280
     caagcggtgg cggaatatat tattcsgtgg cgcggcgagt ggactcccga agtatgcgcg      2340
     gcttactttt ctggtgaatt agtgtgcgat tgttggaata ttgcccaaat ttgtgtctat      2400
     gttccatcag ttgcacacgg ttatgttgtg ggtatgcttc acgtcgtgcc tctaccctga      2460
     aggtgtcatg gacacgcttc acgtcgtgcc tctgtcctga cagtcgtaag atacgcttca      2520
     cgtcgtgcct ctagattggt tcagtgttgt taagctatgt atcacagtgc gcctctagct      2580
     tagcagcatg ttgtgttatc tttaaattaa ttgtttagsg cgcttatttt atttttattt      2640
     ttagagacga tgtggtatgc taacgtcgcg cctatgccac atggaacaca tgatatgcga      2700
     acgtcgtgcc tatgtcatac ggatgatgat gtacttctgt gtgtataata agctaacgca      2760
     gtgcctatgt tatacaatgt aggtgacaca tgatatgcga acgtcgtgcc tatgtcatgt      2820
     agtgtggaga taaatgacta acgttgtcct attcagtgtt gctatgtgaa ctatgctaac      2880
     tcgtgcctgt ggttcatgct tagctgtgcc atttttttta aagaaatcct gctacgctcg      2940
     gcgataagct aacgttgtgc ctatgtcgtg caggctagag gccgtgtggt acgctaacgt      3000
     cgtgcctatg ccacagggtg gcgtgagaaa tatgctcgcg cctgggtctc tcacggttct      3060
     tatacgtaaa cgtggttaac gtccactata acagtaatgg tggagttgag ttgtctgcag      3120
     cggttcaatt gcattattgc catgaaaaaa aaagttgttt ctattttttt tcttttaagg      3180
     tgcaaactgt aataatgacg acacggagtc cacgcttgag caagctgcca gacataacga      3240
     tgtgcctcct gaagtgatga catcaggacc cttactaagt acctccagta cagcacagcc      3300
     tcgggtatag gagcacgagg acgagctcca gtcaggagag gccg                       3344
//
ID   Gypsy-18_MeUr-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3033-3033 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 299 BP; 81 A; 52 C; 62 G; 104 T; 0 other;
     tgttagcagc aaagtgacgt cacatccgtt aagaggaggg gatggcggac agtcaccgcc        60
     aagcacctat ataagacgat gagcgctcgt ctggagacac ttatatttgt ggtgaacgtg       120
     ttaaggggaa actctgcccg tttgaatagt caattctgtt tcgtcttata tttgtttaga       180
     attgatttac aaaagtctgc ttgatttgcc atttcgtaat ttataaattt caccatttaa       240
     aatactcgtg atcttaatga agttcttatt tttatttatt tagtcccgtt ctgctaaga        299
//
ID   Gypsy-18_MoPha-I repbase;    DNA;    INV; 5086 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5086
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1098-1098 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..1076
FT                 /product="Gypsy-18_MoPha-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MSSWINTLSKEQALQLAQQHGIDAAAPLDALRRRLRQ
FT                 FHTAYPGILQIPDIPAIFIEPADDNMPHQPEPIPGSHTMEPERGALQEPLR
FT                 TTPGPVERIKLINQIRKWGHHFDGKDPLSFLERTEELRVSYGLEGEHLLLG
FT                 LPELLRGDALLWHRNNAGQWNTWEEFSESVRQAFLPPGYQRRMKLEIQGRH
FT                 QRRGETFQAYATALTTMMRRAGGYSERDRVEQIYENMDPDYQLFVPLTGQT
FT                 TLLELSSQAARYEEIEQRRKTRSPEARPVSKTTAAVTTYSREDCCWRCKQR
FT                 GHTRQDCKRPPKKFCSRCGKDGVLTRDCHPPGNAQRAGDVAVVTEPATE"
FT   CDS           953..4141
FT                 /product="Gypsy-18_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TATEEVLFPLREGWSPNSRLPPAGKRPAGRRRGGRHR
FT                 ARDRITYNPRPHLPVRIGGHSLLALVDSGSELSYVSDETARLFPRQRVATG
FT                 PTEGYAHLADGTQVAILGILHLSLRLQGRTYRHRFAILPRLGSQVLIGVDL
FT                 WRKLRLTLRPPPLGPGSKRTTIGALSRQTPREAAQLQAFLAAELPKFERIR
FT                 GTTSHAEHRIRLKPGPPIKQRYRPRNPAMQAVIDREVDKMLAEGVIEPSRS
FT                 PWSSPVVLVKKKDGAHRFCIDFRRLNEVSEKDAYPLPHITATLDKLRGATY
FT                 LSTLDLKSGYWQVPLARASRPATAFTVPGRGLYQFTVMPFGLHSAPATFQR
FT                 LLDSVLGPDLEPHVLVYLDDIIVASNTFEDHLRHLAEVFRRLRAARLRLNP
FT                 DKCHFCRNSLRYLGHVVDRQGVHTDPEKVSAITKWPAPTTLRKVRQFLGMA
FT                 SWYRRFIPDFATQAAPLTALTRKHARWSWGDAEEDAFRRLKAALTSAPVLA
FT                 CPDFARPFLLQTDASTHGLGAVLTQDHGQGERVIAYASRTLNKAEANYSAT
FT                 ELECLAVVWGIRRMRDYLEGYRFTVLTDHQALKWLQQMEAPTGRLGRWLFE
FT                 LQQHDFEIRYRRGSQNHVADALSRTPQVGAIHRPGCPWYARMKRRVTDHPE
FT                 EFPDYALRDDRLYRHLLHDLNFSETPAEDQWKECLPRERRQEVLRRLHDEP
FT                 TAGHLGVAKTIARVARLYYWPGMFRDIARYVRQCSTCQAHKVRQQKPAGHL
FT                 HATPVNAPWQQVSIDLVGPLPRSGRGHTWLLTAQDRFSKWIELVPLRQATA
FT                 TAVTREVTRRIVYRHGCPQRVISDNGTQFTSRPFRRLLADLGVEHRTSPVY
FT                 APHCNPVERANRTIKTMVSQYVGDRHRDWDQHIEALQFALNTATHAATGYS
FT                 PAFLVHGRELARPHPEDRRQPEELRPEDRHRALRDAYEVARVHLARAYQAQ
FT                 EHHYNLRRREWRPRVGEKVWKRDRPLSNRENAFNAKLAPKFRGPMEVRRIH
FT                 SPVVVDLKDAQGRWHRHIHVQDLKPDQREDTGETEGETDTDGEEDADSDKE
FT                 ETPADE"
XX
SQ   Sequence 5086 BP; 1095 A; 1775 C; 1480 G; 735 T; 1 other;
     tggcgcccga acagggacct gactagtggg aacccagctt gcgtaaaaac cgaatgagtt        60
     cttggatcaa taccctttcc aaagagcagg cattacagct tgcccagcag cacggaattg       120
     acgccgccgc tccattggac gctcttcgaa gacggctccg ccagtttcac accgcatatc       180
     ccggcattct ccagattccg gacataccag caattttcat cgagccagcc gacgacaaca       240
     tgccccacca gccagaacca ataccaggga gccatacaat ggagccagag aggggcgccc       300
     tccaggagcc tctacggacg acacccggac cggtggaaag aatcaaacta atcaatcaga       360
     tccggaagtg ggggcatcac ttcgacggga aagatccact ctccttcctt gagcgaaccg       420
     aggaattaag agtgagctac ggcctggagg gagaacacct cctcctcgga ctaccggaat       480
     tgttaagagg cgacgcgctc ctctggcacc gaaacaacgc cggccagtgg aacacctggg       540
     aggagttctc cgagagcgtg cgacaagcat tcctgcctcc aggttatcag cgccgaatga       600
     agctagagat ccaaggtcgc caccagcgca ggggtgagac gttccaggcc tatgccacag       660
     cactgaccac catgatgcgc cgagccgggg ggtactccga gcgggaccgg gtcgagcaga       720
     tttatgaaaa catggatccc gactaccagc tgttcgtccc tctaaccgga cagaccaccc       780
     tgctcgagtt aagctctcag gccgctcgat atgaagagat cgagcaacgc cggaagaccc       840
     gctcgcccga agctaggccc gtctcaaaga ccactgccgc cgttacgacc tatagccgag       900
     aggactgctg ctggcgctgc aaacagcgtg gacatacccg acaggattgt aaacggccac       960
     cgaagaagtt ctgttcccgc tgcgggaagg atggagtcct aactcgcgac tgccacccgc      1020
     cgggaaacgc ccagcgggcc ggcgacgtgg cggtcgtcac cgagcccgcg accgaataac      1080
     ttataatccg cggccacacc tacctgtccg tattggcggc cactctctgt tggcgctcgt      1140
     ggactcggga tccgagctgt cttatgtcag cgacgagacg gccaggctgt tcccccgtca      1200
     acgtgtcgcc acggggccaa cggaagggta cgcacacctc gccgatggaa cccaagtagc      1260
     catcttgggg atactccacc tgtcgctacg cctgcaggga cgcacgtacc ggcaccggtt      1320
     tgccattcta ccacggctag gcagccaagt tttaatcggg gtggacctat ggcgaaagct      1380
     acgcttaacc ctccgacccc ctccgctcgg tcccggcagc aagcgcacaa ctattggggc      1440
     actcagccgg caaactccac gagaggcagc ccagctccag gcgttcctcg cggcggaact      1500
     tcccaagttc gagcggatcc ggggaaccac gtctcacgcg gaacaccgca tccgcctcaa      1560
     gcccggaccg cccatcaaac agcgataccg gccacgaaat ccggctatgc aggccgtcat      1620
     cgaccgagag gtcgacaaaa tgctggccga gggagtaatc gaaccctcgc gcagtccgtg      1680
     gagctcaccc gtggtcctgg tcaagaagaa ggacggggca caccggttct gcattgattt      1740
     ccgccgcctg aacgaagtct cggagaagga cgcatacccc ctcccgcaca tcaccgccac      1800
     actagacaag ctccgggggg cgacctatct ctctacgctg gacctgaaga gcgggtactg      1860
     gcaggtcccg ttggcgcgag ccagccgccc ggctacggca tttacggtac ctggacgagg      1920
     actctaccag ttcaccgtta tgccgttcgg actccactcc gccccggcca cgtttcagag      1980
     actgctcgac tctgtcctgg ggccggacct cgagccccat gtgctagttt acctcgacga      2040
     catcatagtg gcaagcaaca ccttcgagga tcacctccga cacctggcgg aagtcttccg      2100
     acgcctccgg gcggctcgac tccggctgaa cccggacaag tgccatttct gccgcaacag      2160
     cctacgctac ctggggcacg tcgtggaccg gcagggcgtt cacaccgacc cggaaaaggt      2220
     cagcgccatc accaagtggc ccgcacccac caccctccgg aaggtgcgcc agttcttggg      2280
     catggcgtcc tggtatcggc ggtttatacc cgacttcgcc acccaggcgg caccgctgac      2340
     cgcccttacc aggaagcacg cccgatggtc ctggggagac gccgaggagg atgcgtttag      2400
     gcgcctgaag gccgctctca cgtcggcccc agtattggcc tgtccggatt tcgccaggcc      2460
     tttcctcctg cagaccgacg ccagcaccca cgggctgggc gccgtgttaa cacaggacca      2520
     cggccagggg gagagggtta ttgcctacgc cagccgaacc ctaaataaag cggaggcgaa      2580
     ttacagcgct acggagctgg aatgcctggc ggtggtctgg gggatccgcc ggatgcgcga      2640
     ctacctcgag gggtatcgat ttacggtgct taccgaccat caagcactaa aatggctgca      2700
     gcagatggag gctcccaccg gccgactggg gcgatggctc ttcgagttac aacagcacga      2760
     cttcgaaatc cgatatcggc ggggaagcca gaatcacgtg gccgatgccc tctcccggac      2820
     gccacaagtg ggggccatcc accggccggg ctgtccgtgg tacgcgcgga tgaaacgccg      2880
     ggtcaccgac caccccgagg aatttcccga ctacgcgctc cgcgatgacc gcctgtaccg      2940
     ccacctgttg cacgacctaa acttctccga aacaccggcc gaagaccagt ggaaagagtg      3000
     cctgccgcga gaacggcgac aggaggtatt aaggcgactc cacgacgagc ccaccgcggg      3060
     acacttggga gtggcaaaaa ccatcgcccg ggtggctcgg ctatattatt ggcccgggat      3120
     gttccgcgac atcgcccgct acgttcggca gtgctccacc tgccaggcac acaaagtccg      3180
     ccaacagaaa ccggccggcc atctgcacgc caccccagta aacgcaccat ggcagcaggt      3240
     gtcaatagac ctagtgggtc cgctgccccg gtccgggcgc ggccacacct ggcttctgac      3300
     ggctcaggac cgattcagca aatggatcga gctggtgccc ctccgccaag ccacagcgac      3360
     cgccgtgact cgcgaggtca cccgaaggat tgtctaccgc catgggtgcc cccagcgcgt      3420
     catctccgat aacggcacgc agtttacctc gcgacccttc cgacggctcc tcgcggacct      3480
     cggggttgag caccgaactt ccccggtgta tgcaccgcac tgcaaccccg tggagcgggc      3540
     caaccggacc ataaaaacaa tggtgtcgca gtacgtcgga gaccgccacc gcgactggga      3600
     ccagcacatc gaggccctgc aatttgcgct aaacacggcg acgcatgcgg ccaccggata      3660
     ctcgcccgcc ttcctcgtgc atggtcgaga attggcgcgg ccccaccccg aggaccgccg      3720
     acagccggag gagctgcgcc cggaggacag acaccgggct ctgcgggacg cctatgaagt      3780
     ggccagggtg cacctcgccc gagcatacca ggcgcaagaa caccattata acctgcgacg      3840
     gcgcgagtgg cgaccgagag tcggggaaaa agtctggaaa cgcgaccgac cgctgtccaa      3900
     ccgggaaaac gcgtttaacg ccaagctggc gccaaagttc cgtggcccaa tggaggtacg      3960
     acgcatccac agtcccgtgg tggtggacct gaaggatgcc cagggaaggt ggcaccgcca      4020
     catacacgtc caggacctca agccggacca acgggaggac accggcgaaa cmgagggaga      4080
     gaccgacacc gacggagagg aggacgccga ctcagacaaa gaagaaacac cggccgacga      4140
     gtgagagaat cacccccgtg gaaaatcccg aacaaaccca ctcggttaat accgaacgaa      4200
     cccgggacac acgcaaactc accttaacga ttacccccac gccgcgtcac tcccacccca      4260
     tgccgaccca ctatataaga gcggcccgcg ccctcatttg catcgctttc cgaaatggga      4320
     gaccgcaaag agcgcgaacg agagctcttc gggagcccca tatcgagctc gagcgacgac      4380
     gaaagggacg agggcacggc gtggaagagg cggccgaagg agcccacacc gccaccacca      4440
     ccacctaggg agcggagggt gcctcgtcgg gggacctcca tccagcggtc cgacgccgac      4500
     caacggagga aagcgggctt cctcgctcaa ctccccccac caccacccag gggacgccgg      4560
     actcggagga ggccccccga ggggtacgcc gtcaaggctc cccccgcgcc cccttccacg      4620
     cgccccgccc caccaccgcc cgcgccacct cgcgccgcgc cgcccaggcc gctcgcggcc      4680
     gttacgccgc gactaatcgc gccaccgccg gcgccaccga ccgcgccacc cattgcggcg      4740
     cccccggcgc taccgaccgc gccgccgatc gcgtcgcctc cgacgccgcc caccacgccg      4800
     ccaccagcgc cggcgcacca cggctaccgc acggtccggc ccgcaccgcc cctcccgaac      4860
     ggaaccagcc cggcaccgcc ggcggggtac acccccccgg tgcgcgtggc cttaccgaac      4920
     gggagggtgg tggcggtgcc attccacgcc gccgtggtgc gccgtaagta ccgggtgact      4980
     gacaccggcg atcgatggat catccgcttc gatcgccggg gtcagccccg ggcaatccgg      5040
     ccgttgccac ccgcgcccac ccccccctaa aaaggggggg gggtga                     5086
//
ID   Gypsy-18_MoPha-LTR repbase;    DNA;    INV; 857 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-857
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1182-1182 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 857 BP; 151 A; 289 C; 235 G; 182 T; 0 other;
     tgtgacaatt cgtcactaag tcccgggccg accatccgcc ccaccacggg actcggcgtc        60
     tacggacgcc cctcccgaaa gtctagtatc ccccgtcggg aaccgatccc accacgctgc       120
     tgggagcgcg tggggatcgc cccgacgggt ataaaagccg agctcgatcg ggatcgagca       180
     ccagtcccgt cctgtcgact gagtaggtct ccggaccact ctgacgcccg gttctcgccg       240
     gcattcgact atccttgtgt ccgccgacgg agcaggccac ctggccgttc tgccgcccgg       300
     ttcttgccgg cattcggcta tcctcattgt gccaacagag caggccacct ggccgttctg       360
     ccgcctggtt ctcgccggca tttggccatc cttgtatccg ccgacggagc aggccacctg       420
     gccgttctgc cgcccggttc ttgccggcat tcggctctcc ttgtatccgc cgacggagca       480
     ggccacctgg ccgttctgct gcccggttct tgccggcatt cggccatccc tagcatcctc       540
     cacggggccg gttacttggc cgccctgccc gcccggttct tgccggcgaa cacggttcgc       600
     gaccgcgttc aaggtgctgc gcactagcgc gctcccgtcc gagccgacga cattaggtta       660
     agctgtacat tactgtatat acacgcatag aataagtagc acataaggta gcctaaggac       720
     tatgtaagat aggataagca ttgtaataaa ggactgttaa tctgatatcg gtctacgcaa       780
     gttggtttcc ccccttctcc cgaatcctgg aatccggcga gcctgtccga ggcgatcggg       840
     aaaggtgaac cgttaca                                                      857
//
ID   Gypsy-18_MSe-I repbase;    DNA;    INV; 5576 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5576
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 895-895 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5576 BP; 1888 A; 1010 C; 1036 G; 1642 T; 0 other;
     tttcagaagt gggatcagaa aatgccgccg tattacacag gactgcgtaa gaggaaactc        60
     agcaacactt ctactgaagc aactagtgaa gaagaaaacg atagcaattt tttttcttct       120
     tttgcaatac cacccaatga aggactgctg ccacgttcat caagaaagag gagagttacc       180
     catcttgatg ctgaaatcat cccaaaattt gatccgggac agaagacaac taatgtacaa       240
     ggttggttac acaaaatcga tcaattagga gatttatatg agtgggaaga gcgcgataaa       300
     atcttcgcca tgcaaattcg tcttcgggga gcagcccgag aatggtatga cgatctagat       360
     gattacggcg cttcttgggc catctggaaa gacagattaa caaaagcttt tccccgctcc       420
     actgattttg ttgaccgtct cgaagagatg ttggcacgaa aaaaaaagca atgacgaaac       480
     tatgaccaaa tatttccatg ataagatttc tttgcttaag aaatgtagtt tggaaggagc       540
     agcagctata tcctgcgtaa tccgaggatt gcccgtggag ttacaagcaa acgcaaaagc       600
     atatagttgt gatacagcag aagaacttta ctatggtttt ttatcatctc ttgaaaatta       660
     taaaagttag aagcgaaatc atccgattct aaatcgacct ggcaacgagg aacggcaacc       720
     aacatcgccc ccaagatttg ctacaactgc cgtaagactg gacatgaaat tcgggactgc       780
     aaatccgtgc gctgccaaat ttgtcaacgg ctgggccact ctgccacgtc ttgctggtat       840
     gctgccggga catctcagac cgtccctagg acagcacaat acaccacgac tcagcagcaa       900
     ggaatacagg cacctcagcg gccaatgcag gtgtgtaatg tatattttac ctcttacaaa       960
     cctttatctc aattgtatac gaaaacgata tctatcaata atcatacagc attggcttat      1020
     attgatacag gtagtagagt aaatataata acctcaaata ttaaacagaa attgaaatta      1080
     aattacttac catcaaatat tgtaatgcga ggcttcggtg gtttgcatat accgtcatta      1140
     ggaaaagtac agtttaacct tcatatagat gacgtgtaca ttacaacttg tgctgaaatt      1200
     accgatgcta atcttagtaa tatagatctc attattggac aacctgtgct tagccatcca      1260
     aacattagtc ttgtggtgac gtctcgaaca gtaactttgt ttacaaccga cactacacaa      1320
     cacttatcag ggatctcact aaatagtagt gattttattt caaaagtttc gctatttacg      1380
     tgcaatgacg ttgagctgtt tccaggctgt agctgtgata taaacgttta caccaatcac      1440
     aatatgaata ctaatattct cctagttact agaccagttt tattcatgtt gggaaaaaaa      1500
     tcataccata taccacaaac tattttaaca caaaaaccat atcagttacg tattataaat      1560
     attggtaaca caattataca atggcaatct gataagttag tcactcgcgc cgatgtttac      1620
     tgttacgacg acgtactgac aatttctggc gaaccatatt tcgatatacc cacagagaac      1680
     ccgaaaatgc atttaaatct ttatgatatc gatgttggtg aaatagataa gtataataag      1740
     tcacgtttac atgacttgtt aaataaatat agtaaaacat ttgccgagtg tagtagtgat      1800
     ctcggtacta gtgatctgat agagatgcat attgaaacca caaccccaaa tccagtttat      1860
     tgcaagccat atcgtttatc gtataaagaa aatgagatcg ttcaaaataa agttgacgaa      1920
     cttatttccg cgggtatagt ccaggagtca atatcacagt atgctagtcc agtcatcttg      1980
     gttagggaaa aaagcgggcg actacagact ttgtgtagat tatcgagcat taaatgctcg      2040
     cacagtaaag gatcgctatc ctcttccaca catcgatgac caaataaacc ggctttcagg      2100
     aaaaacaata tttacaaccc tagacttaac gcagagttat tatcaggtta aaatttcgga      2160
     cgaatcaatt tcaaagactg cttttgttac tccgagaggc caatatgaat tcctgaaaat      2220
     gccttttggt ttagctaatg ctcctgctgt attctcgcgt ttgattcgta gggctcttgg      2280
     ttcactagaa agtaaaatag ctatttatct agatgatttg acaattccat ctacaagtat      2340
     tgaggaagga atagatctat tagaagaagt tttaaatctt ttgacaaaag caaatctaaa      2400
     actgaatcta aagaaatgct catttttaaa gacaagcgtg agttatttgg gccatgaagt      2460
     cactgcaggt agtattaggc ctggtctgac taaaataaat gctgtttcgg aattcaagcg      2520
     accacaaaat gtacaccaga ttcgacaatt tataggttta gcttcatatt ttcgtaaatt      2580
     tgtaagggga ttcgctgaaa tagctagacc ccttacatat cttaccaaaa ataacacaga      2640
     atgggtttgg ggacacgacc aggaacatgc attcacaacc atcaaagcta tcttaacaac      2700
     acgtcccgtg ttggccattt atgacccaca tgctacgaca gaagtacaca ccgacgctag      2760
     taagctaggc ctaggcggaa tcctattgca ataccagaca gatggccttt taaggcccgt      2820
     tgcttacttt agtcgtgtaa caagccaaga ggaacaacat tatcatagtt ttgaactgga      2880
     aactttggca gtagttgaat ccttgaaacg atttagaata tacattatgg gtatcccaat      2940
     taaggtagtt acagattgtg ccgcgttaag aacaactttg agtaaaaaag atttgatacc      3000
     gcgtatcgct cgatggtggc ttactatcca agattttgac atagaaatag aatatcgtcc      3060
     tagtgcccgc atgcaacacg tggatgctct tagccgtaac ccagtagata caataccagt      3120
     tttacaaatt gatgacgtag attggcgcct aacgttacaa atacaagata aaaacgtgca      3180
     ggccataatt aatcaactga aagaaggaac aagtaatcca gatattgtca ataattatga      3240
     attaattgat gattgcttgt ttcgtaaaac tttacatggt agtagatttg ttattccaaa      3300
     actatcgaaa tggggtttgc ttcagaaata tcatgaccaa gtaggacata ttggttttga      3360
     taaatgtgaa aaggttataa aatcacaatt ttggtttgct gggatgacca ggtttatccg      3420
     aaagtatata aaagcttgtt taacctgcgc atatgccaag ggtaactacg gcaaaactga      3480
     gggagaacta catccgatcc ctaaagtaga tattcctatg cacacaatac atgttgatca      3540
     tttaggtcct tttttttaaa aacaaggaaa gggaattgct atatattagt tgttatagat      3600
     tcctttacca aatttgtgtt cgcaagggcg gttcgagggg taagttcagt tgaaacgata      3660
     aaacatctgc atgaaatcat ttctactttt ggtaatccac accgaataat tactgaccgt      3720
     ggcgttgctt ttactagcag atattttaag gaatttgctt tacaaaaaca atttaagcac      3780
     gtcttgaatg caatcgcatg tccgcggtca aatggccaag tagaaagagt aaaccgtacg      3840
     ataataaatg gccttaatac cacagcggag agcgaatgta cctgggatga taagttagta      3900
     gatgtcattt ggggaataaa caataccaca catgcagtca caggtgtagc tccattcaat      3960
     ttgatgttct ctcacaaaaa ttctcttctc cctgcatatt caaccacatt aaatagtgat      4020
     tcgacttcaa gggcacaatt agaagaacgt agaaaggctg ctaagttaca tatagataaa      4080
     aatatgacgg tcatgaaaag tcgatatgac cgacgccata aaagttgtag gaaataccaa      4140
     ataggagaat tagttctatg gaaaggaggc atttctaggg acaagaccac cacgggaata      4200
     accaaaaaat taggaagtct attcacagga ccctataaaa ttactcatgc tgactgtagc      4260
     atagatcgat atacaataaa tagtataaaa ggagtgaaag gatatagaaa attcagtgct      4320
     cttgtgccta gtgactccct tcggccctac aaacctaccg tttcggatag ttcatcagaa      4380
     tccgatcggg aggtagacag agacgatctt atcgatttat tagaaagtta atgttttgat      4440
     ggctacatga cattgtattc cactacgaaa ctcaaaatag aaaataatta aatattctta      4500
     tgtaattagt tgttacccat ccacttattc taaggtggtc attaaaagaa taatgatgca      4560
     ccctaatttc taataattta aataaatcta gtaatgggta cgtctttatt aaacttctac      4620
     tgtatgtcac aagacttaat ccatacatat attataatat taccatataa acattgttgt      4680
     aaactgaaat aatatttaac attgaatcta tactataata aataaagata ttattattat      4740
     tatacaatat ctagccacta agctatgtga tactgtagtc tagatctatg tgaatatcta      4800
     ggctacaaag ctatgtggta ctgtagtcta gatctatgtg aatatctagg ctataaagct      4860
     atgtgatact gtagtctaga tctatgtgaa tatctaggct acaaagctat gtgatactgt      4920
     agtctagatc tatgtgaata tcgagtctat aaagctttgt aatactgtaa tctagatcta      4980
     tgtgaatatc gagtctataa agctttgtaa tactgtaatc tagatctatg tgaatatcta      5040
     ggctacaaag ctatgtgata ctgtagtcta gatctatgtg aatatcgagt ctataaagct      5100
     ttgtaatact gtaatctaga tctatgtgga tatctaggct acaaagctat gtgatactgt      5160
     aatctagatc tatgtgaata tcgagtctat aaagctttgt aatactgtaa tctagatcta      5220
     tgtgaatatc cagtctacaa agctatgtga tactgtagtc tggatctatg tgaatatcta      5280
     atctacttaa ctatgtgagc ctacgtctgt taatttctaa ctgtgaatta taattgttat      5340
     cttaattacc aaaattaaac taatgcatct tataacatta tgtcgcatta ttacattacg      5400
     tacaaatata atcaatcaat taattaaaat atgtaaaaca caacactata agaaaagaat      5460
     atattttttt ttttttttaa cacaaaaccg cgtaaaatat tttttgtttc agctcccaaa      5520
     aatgggagac aatccgattg atcgccgtgg gccacggcag ctgcaggatg gccgaa          5576
//
ID   Gypsy-18_MSe-LTR repbase;    DNA;    INV; 388 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-388
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 944-944 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 388 BP; 121 A; 63 C; 57 G; 147 T; 0 other;
     tgtaataagt tttactcaat aacccgtatg tttcggatga ggtgtaaata tatatcttgt        60
     aatttcccct attattatat aaaatattat tattattaat ttagcataag tatgacacca       120
     atgaggttta tgtctaatta taaatatatc taacaatgta gtgaattaat tatattaaga       180
     attattatgt tggtaactct caattgcaat tgtttattta atattttctt gttggcaaca       240
     ctgcattgaa attgtttata aaatagggtg caacagtcat ttgagccctc ttgtattgtg       300
     gatcgcctaa taaacaacac ctcttggcac ttcgtgttat tcattcgaag acccggacca       360
     gaccattcct cgcatcctgc tcgtcata                                          388
//
ID   Gypsy-18_OrIn-I repbase;    DNA;    INV; 4152 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4152
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1559-1559 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..1170
FT                 /product="Gypsy-18_OrIn-I_1p"
FT                 /translation="MPETSIRIRIEAGGGTSRGQKIVHKIMSIQRVGDVDT
FT                 YVFPHEFNTREFHSELFELSTVKNVCKALTKQGHFRTVTVKLTEDIVPIYF
FT                 DESFNLVFRGHFLEVRSQVVQGSSHERELLDIIATLNERLYGGGQKITDIS
FT                 RIEKLFVLEKFDGKGNARDWLNLFQSECDRHEVLEDRSRIQIFRFFLSGNA
FT                 VEWYASTLCKLKIDGAWEDWTGSFITTYGDKSWHTVAYAYQFKFISGSFLD
FT                 YALKKERLLLDTESDMSVRSRINHIVIGLPKYIQNRLDKEEIRSTEELINQ
FT                 IRRYEETPFKAKNNGKFEVQSAKSGTNNGSKWVEKKACTICENLGFTGRFH
FT                 SLDNCRNKGKQRDHKNINMAEVESFSTTIDGSKNGDAHH"
FT   CDS           1143..4151
FT                 /product="Gypsy-18_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RFKKRGCPPLIRLNVQINDKEVTGIYDSGSNVTLINY
FT                 RILEDIKDKIYSDEQIFKTISGVAKTTDKIKIPMKIHEIEADIDAYVVKKD
FT                 TFSYDVLLGLDAIQEFRLIQDENLKIYQRKVSGDIDCVSISHTNFTECIPQ
FT                 NLCHLSPAQNARIQQMIQTHSSVFAAGKFDVGLLKGYEAHIKLLENKFVSK
FT                 KPYRCTVFDQKEIEHQVGELLQHDLIEESSSPFAAPVTLAFKKEDGRRSRF
FT                 CIDFRELNKILVPESQPFPRIEDIIVNARNCRWYTVLDISSAFWSIPIREK
FT                 DRHKSAFVTQTGHYQWKRLPFGLKISPAIFQRVLSNIIRRRGFSGFCVNYI
FT                 DDILIFSDTFENHLGHLRQLLSALDAEGFKLKLSKCEFAQSSVQFLGHILA
FT                 CNSVRPNHDNLKAIRDFPKPQNKKNIRQFLGKINFYHKYIPDYTRSLEPIH
FT                 NLLRDKVDFQWTDDCAKTFERIKTYLCTSPILAIFDPVRPTFLFTDASKLG
FT                 VGAVLKQRQESGELHPVAYFSKKFSPSQSKKKAIYLECLAIKEAVQYWQHW
FT                 LLGISFLVVSDHKPLENLRVKARTDEELGDLIYYLSQFNFKIQYSPGSTNQ
FT                 EADALSRNPVLEYFDRPEETLRVVNLVSLDDIRSDQQNYTSDTALDGNTYW
FT                 KDGLLYKKLRQRERIFVTEEFGLELIKKVHHHFGHIGVYHLAQKLRPFYYF
FT                 YNMDSHIKDFCARCDTCRQHKTRKGRDLGLLSQLGPADKPFQIMSLDTIGG
FT                 FANYRSPKRYLHLLVDHFTRYAYTYSSRGQQTSDLIKFLRPIFEKHNIGIL
FT                 LADQYASIKSLNFKKFLRQHNVTLLFTSVDCPSSNGLNERLNQTLVNRIRC
FT                 KLSENPQKPWSVLAAECTIEYNRTTHTVTQFSPLYLMHGLQSPVVPEALSP
FT                 KSCLEEDRIRAFQNSQRHHLSNKNRVDRFKRDFQFNPNDEVYVDQGSGLHR
FT                 RKLDPVRTGPHRIVRRISNVIYEVNCGRRRRHSEFIHISKLQPYLGGE"
XX
SQ   Sequence 4152 BP; 1248 A; 770 C; 906 G; 1228 T; 0 other;
     aatcggtttt tttcttcatc tacaatgccc gagacgtcaa tacggattcg gatagaagca        60
     ggaggaggaa catcgagagg acagaagata gttcataaaa tcatgtccat acagcgggta       120
     ggagacgtag acacgtatgt gttcccgcat gaatttaata cgcgtgagtt tcattcagaa       180
     ttatttgaac tctcgacggt caaaaatgtt tgcaaagcac tgaccaagca gggtcacttt       240
     agaacagtga cggtcaagtt gaccgaggac atagttccaa tttactttga tgaaagtttt       300
     aatttggtct tccgaggaca tttcctggag gtacggtctc aagttgtgca agggtcgtct       360
     catgagagag agctcttaga cattatcgcc acgttaaatg agcgtttata tggtggaggc       420
     caaaagataa cggatatatc gagaatagaa aagctttttg tcctggaaaa atttgacggc       480
     aagggaaatg ccagagattg gttgaattta tttcagtcag aatgcgatag acatgaagtc       540
     ttggaggatc gctctcgcat ccagattttc cgtttttttt taagtggcaa tgccgtggaa       600
     tggtatgctt cgacattatg caaacttaag atcgatggtg cttgggaaga ttggactggt       660
     agttttatta ccacttatgg tgataagagt tggcacaccg tcgcatatgc ataccaattt       720
     aaatttattt ctggatcttt tttggattat gcccttaaaa aggagcgcct cttactggac       780
     actgagtctg acatgtcggt tagatcaaga ataaaccaca ttgtgatagg tttacctaaa       840
     tatattcaaa atcgtttgga taaggaggaa attaggtcta ccgaggaact tataaaccaa       900
     attcgtcgtt atgaggaaac accgttcaag gctaaaaata atggaaagtt tgaagtacaa       960
     tctgccaagt caggcacgaa taatggttct aaatgggttg aaaagaaggc gtgtaccatc      1020
     tgtgagaatc ttgggttcac tggacgtttt cactcattag ataattgtag aaataaagga      1080
     aaacagagag atcataagaa tataaacatg gccgaagttg aaagtttttc gactaccatt      1140
     gacggttcaa aaaacgggga tgcccaccac tgattcgatt aaatgttcaa attaatgata      1200
     aagaagtaac cggtatttat gatagcggtt ccaacgttac ccttattaat tatagaatat      1260
     tagaagatat aaaagataag atatattcag atgagcagat tttcaaaaca atcagtggtg      1320
     tggcgaagac tacggacaaa attaagatac ccatgaaaat ccatgagata gaggctgata      1380
     tagacgctta tgtagtaaag aaagatacgt tttcatatga tgtcctttta ggcctagatg      1440
     ctattcaaga gtttcggttg attcaagatg agaaccttaa aatataccaa agaaaagttt      1500
     caggtgacat agattgtgtt tcaatatcac atacgaattt tactgaatgt attcctcaga      1560
     atttatgcca tttgtctcca gctcagaacg caagaattca acaaatgatt cagacgcaca      1620
     gttcagtttt tgccgcaggg aagttcgatg ttggtttatt aaaaggatat gaagctcata      1680
     tcaagcttct ggaaaacaaa tttgtttcta agaaacctta tcgatgtact gtttttgatc      1740
     agaaggaaat tgaacatcaa gttggggagt tgttacagca cgacctgatt gaggagtcat      1800
     cgtctccttt tgctgcgccg gtcactctgg cttttaaaaa agaagacgga cggcgttccc      1860
     ggttttgtat agactttagg gaattaaata agatcttagt accggaatcg cagccgtttc      1920
     ctcgtattga ggatattatt gtgaatgcca gaaattgccg atggtatact gtcttagaca      1980
     taagctcagc attttggtcg ataccaatcc gtgagaaaga tcggcataaa agtgctttcg      2040
     taacccaaac aggccattat caatggaaac ggttgccatt tggattaaag atttcacccg      2100
     ccatttttca aagggttcta tctaatatca ttcgtcgtcg aggtttttcg ggtttctgcg      2160
     ttaattatat cgatgacatc ttgatttttt cggatacttt tgaaaatcat cttggacatc      2220
     tacgacagtt actttctgct ttggacgcgg agggattcaa actaaaattg tcgaagtgcg      2280
     aatttgctca gtcatcggta cagtttttgg gtcatatctt agcgtgtaat tcggttcgtc      2340
     ctaaccacga caatctaaaa gccattcgtg attttccgaa gccgcaaaat aagaaaaata      2400
     ttcgacaatt tcttggtaag attaattttt accataaata tattcctgat tatacgagat      2460
     cgcttgagcc tatacataac ctccttcggg ataaagttga ttttcaatgg acagacgact      2520
     gtgccaagac ttttgagaga ataaaaacgt atttgtgtac cagccccatt ttagcaattt      2580
     ttgatccggt ccggccaaca tttcttttca ccgatgcgag taagctggga gtcggggctg      2640
     ttctcaagca acgacaggag tctggggagc tgcacccagt tgcctatttt tcaaagaaat      2700
     tttcaccgtc gcagtctaaa aaaaaagcta tttatttgga atgtttggcg ataaaagaag      2760
     ctgtccagta ttggcagcac tggcttcttg gtatttcgtt tctggttgtt tcagatcata      2820
     aacccttgga gaatttaaga gtgaaagcta ggacagatga ggaacttgga gatctgattt      2880
     attacctctc tcaatttaat tttaaaattc agtattctcc gggttccacg aatcaggaag      2940
     cggatgcctt gtcacgcaat ccagttctcg aatacttcga tcgtccagag gagactcttc      3000
     gagtggttaa tttggtatca ctggacgata tccgttcaga tcaacagaat tatacttcgg      3060
     atacggcatt ggatggaaac acgtattgga aagacggtct gttgtataaa aagttacggc      3120
     agcgcgagcg gatttttgtg acagaagaat ttggactaga actaataaaa aaggttcacc      3180
     atcactttgg gcatattggg gtctatcatc ttgctcagaa gcttcgtcca ttttactatt      3240
     tctataatat ggattctcac atcaaagatt tttgtgcccg atgcgatacg tgcaggcaac      3300
     ataaaaccag gaaaggccgt gacttagggt tattgtcaca gttaggtccg gctgataaac      3360
     cgttccagat tatgtcgtta gacactattg gtggtttcgc gaattaccgt tcaccgaaga      3420
     ggtaccttca tctgctcgtc gatcacttta cacgatacgc ttacacttat tcgtcgcgcg      3480
     gacaacagac aagtgatcta ataaaatttc ttcgtcctat ttttgagaaa cacaatatcg      3540
     ggattctcct ggctgatcag tacgcttcga ttaagtcttt aaacttcaaa aagttcttac      3600
     gccagcataa tgtaacgctt ctttttacgt cagtcgattg tccatcctcc aacggtttaa      3660
     atgagagact gaatcaaact ctcgtcaacc ggattcgttg caaattgagt gagaacccgc      3720
     agaaaccttg gtcagtccta gcagcggaat gtacgattga atataaccgc accactcata      3780
     cggtcactca gttttctcca ttatatttaa tgcatggtct acaatcaccg gttgttcctg      3840
     aggctttgag tcctaagtcg tgtctggaag aagataggat tcgagctttt caaaactctc      3900
     aacgacatca cctcagtaat aaaaatagag tcgatcgctt caaacgtgac tttcagttca      3960
     atccaaacga tgaggtttat gtggaccaag gaagtggatt acatagacga aaactggacc      4020
     cggtgcggac cggcccgcat cggattgtac gtcggatatc taatgtcatt tatgaagtca      4080
     attgtgggag acgtcgaaga cattcagaat ttattcatat cagcaagctt cagccatacc      4140
     taggggggga ga                                                          4152
//
ID   Gypsy-18_OrIn-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-301
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1525-1525 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 301 BP; 98 A; 44 C; 36 G; 123 T; 0 other;
     tgtaaatggt aaatttccca tttaagttgg cgacattgtc gccaacctcg gataaccact        60
     ctattttgga attttgttat ttgctttgaa gacatgcttt tacttttgta tttccttttc       120
     ataatattgt ttaaacttaa ataatgatta taaaaaaccg atttctcttt taggtaagct       180
     tgattctata taaattgtat tatgttataa attttaaatg tttctaataa aatctctttt       240
     agagtaaatc gaattataat caaacctcgt caaattataa atccctcgac gacgaattat       300
     a                                                                       301
//
ID   Gypsy-18_PBa-I repbase;    DNA;    INV; 10772 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-10772
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 707-707 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..1592
FT                 /product="Gypsy-18_PBa-I_1p"
FT                 /translation="MSTRSSSNKSEVDELYKLGLEXGGKPKPGASKTVHTS
FT                 TPSKFLASKHVTFSLEDTSIAEERFETVCETFESNIPTRETSSASNNSDNF
FT                 DEKAKNLESLKMAQNNPFATLKYAVDAIPYFDGQNIPLNYFIEGCEEAKSM
FT                 LPDEAEPQFAKIIRTRIIGEARRTIQDQDFNNVAQITKYLKQIYGPSKNVY
FT                 QLQGELGCVYQGNDEDVITYANRVKILGKQILEAYRSSGPSLPEQNIKDSL
FT                 ERDMCKCFIKGLKPEIEQRILRNPQMDVKATVADAIRIERELRAMSDLRRG
FT                 NIAKMQNISLQRETCQICYKDGHLASNCRKFIQNSQQNYEILICQICKKRG
FT                 HDASKCRMRDPQSRRTVNVIRENTIVCQLCSKTGHNAKSCRSTNQNKPLLI
FT                 CQWCDRQGHSANNCWKKQNELRATENKARIICQNCNNAGHTARDCRSRMDR
FT                 TTSNNNTPFCRYCKTQGHLLENCELRIASNNRRMAKDSVNSNGPSKPGVQQ
FT                 GTERIPRPSTSSAPQ"
FT   CDS           join(6744..8690,8697..9452)
FT                 /product="Gypsy-18_PBa-I_3p"
FT                 /translation="MDLHNCWAVIIAILTIRFHKTHGIIGYDCGSPSTNLT
FT                 TLSLLNIEECDIPPQNVNSTNVYIQLLQINEFESVKVIQCKVEIDRLIKKC
FT                 GMFSHSMDVLNGKYSYIEETSREVCQRMHSYGTYQLHNGYITGLKPNHTTA
FT                 RPVTLAGHVDADGSCKGSTYSDPYGTWTDVVVLASIKISLQEYIADVRINS
FT                 NRVLLRSGVACELTTTHCTDIEGGETYWDPVPADTCKFNNYGVLYSGIADK
FT                 IIDNVNEQQLVVYSLTAQDTTFALTSKGKYATCGYTLTRTEHPKLIIFETS
FT                 RGVTIFKQRTRVSNLDIFTYMNSKFVYVEKHIRTQINQLYRNILLQQCELE
FT                 QGMLKNALAIATQTPDIFAYYLMKGPGYMALLAGEVIHIVKCVPVEVKITR
FT                 TDNCYNQLPVIRGNETYYLTPQTHVLLRQGTQINCNSFAPTMYHLGDSWYK
FT                 LMPKPVESLPPTIMKPMTKPTWKYVSPGSLATSGIYTENDLNDLRDHILFP
FT                 AERPAVLNTVARRMMGQPISLNGGSLSNLLDEASITKIAASAWKKFWNKFL
FT                 IFGNISAGVIGIYLTGRIIKLIVDTIVHGYALHTVYGWSIHLLGAIWDSIT
FT                 HLLLLLGTKRFQKPEQASAPESDLYSKTPENQVYPLLPPEEKPGFSFELKK
FT                 QQNNLFSFLLLSTIPPPNHLTIIKLFRSEESKNKKEKRRMEAIDTSRLTRG
FT                 RLECKILRMESPLLFWVRLKNGESALQDLSEELNFRMNRKSKELICWPNDI
FT                 EEDKPVAIKDGDVWQRGLITGVNPAQRTARIDLRDIGRQVWRPFHQIFRLE
FT                 GRFQELCWQALTCGLAYTGPAKPTRFWSRKTRALCRILAEGRSGYINIVRP
FT                 LENGAAMVKLVLPHEDDWGVTNLRDALVSLGEARVEKEARIVDTFPAI"
FT   CDS           join(1700..3922,3796..4257,4211..6712)
FT                 /product="Gypsy-18_PBa-I_2p"
FT                 /translation="MLDTGSGPNIIKKNFIPEGVRINYSNILKLNGINDYP
FT                 VFTLGETTLXLFDTLVNFHIVPDDFPIPQAGILGNDFFKQTSSKIDYAQGC
FT                 IDVSGIQVPFLSPETIVVSPRSESLFYVRVGNPNVKIGYVPKLKITYGIYL
FT                 GDTIVENVSGKAYLNIINTRDEEVEVRVPTINLRPLNEMVDLCETRIKTLD
FT                 YQEELTTSHPNSFSRETKHIDPKEELLNENQNKNVISREEDEIMNINGIEI
FT                 VNENKNGNKNKNESENAKTKEDGIINNKHKEIKTSINGDKINKNLKVENKN
FT                 EIKMRGSKKKNLNFDTQREGSYQTSSEISSHPKILGEGSYQTSSENLKNSE
FT                 FLGDENCRITSRDNSGIADGSFRTPRAFSSSIGYEEGSYQTSLRNPTRSCL
FT                 EENDNTNSSVSLKGVKFPRVGMISEKTNGKNEPSHITAKELMERIQINKSN
FT                 EINLGKLGMKNKKPSSRIFKLRQNQSQEILDECIRKRKSKHKEKVIQGIQS
FT                 NSKGNGATECLILSGENQRDRLTKIIELLRLEHLNNYEEENVINLIINSQD
FT                 RFHIPEEKLTATNVLRHKISTTDDQPINTRQYRFPQIHKEEINKQVGELLE
FT                 GGIVKPSQSPYNTPIWIVPKKEDSQGNKRWRMVLDFRALNDKTIGDAYPLP
FT                 NIVDILDQLGGARYFSVCDLASGFHQIKMDPADSHKTAFTTPFGHYEFDRM
FT                 PFGLKNAPATFQRLMDLVLSGLQGKELFVYMDDILLFTRRHNAIWIEKCSR
FT                 YLPTINGFSFIRITRKGTICLYGRYIVIYASSLEEHERKYNLLIDKLREAN
FT                 LKLQPDKCEFLKSEVTYLGHVIGKNGVKPDPKKLEAVRRFPRPKTPKNIKQ
FT                 FLGLAGYYRRFISNFSKLAKPLTNLLKNDVRFEWTQEARRIIKMTYVSSGH
FT                 KKQEESFEILKQRLCEEPVLQYPDFSKPFILTTDASGVAVGGILSQGEINK
FT                 DRPVAYASRTLTDNELKYDTYEKEALAILYCVKHFRPYLYGRKFTLVTDHK
FT                 PLLWFKNAQDTNMRILRWRLKLAEYDYDVVYKAGKTNVNADALSRNPVNFE
FT                 EVNCKAIIDRRTLNPNEAKDAEIISKMLEESDEEEETEEDENFELYLSDDE
FT                 QTENLLPDDNLFRDNTDSIPFTQEELDELPVQQTEKALIHDPPRARRMLTR
FT                 SQTINERNKRLNSTQPQGRNEPKEIEDQTNKSDKEKESDENTDDEGGSEIT
FT                 NEENEELSSIDKLKPTIIDHKLMKNNVVDSRELLFLRKDNVAYFVDVDGNP
FT                 LDSGARKLLERNELPTLNELALCRPQVVKRKNYFHVALPIDEGSREGPTMI
FT                 LNYITQTLMELRKITEELKLETISIAKTDFICNIPWSNIKTQIQTTFLDSL
FT                 TKLIICNGLVKYPPKDLRPSIIGETHCSPTGGHRGVTKTYNRIKHNYYWEN
FT                 MKSDVQRYIQQCLQCQLKKLVRVKTKQPMIITDTPGTAFDKVAMDIVGPLQ
FT                 KTERGNEYILTLQDQLTKFSMGIPLPNQTSETIAEAFVNKFICIFGAPKAI
FT                 LTDQGRNFVSDLMRKIAKLFRIRKFRTTAFHPQSNGSLERSHHALGEYLKQ
FT                 YANEQEQWDRWVSLAMFNYNTCVHEATKHTPYELIFGKIARIPSEKFLAPE
FT                 DKLTSYDDYLVTLVTQLHNLRGNARENIINAKHKSKKYYDKKINPQIFKPG
FT                 DYVFLLKGPKPGKFGDQYTGPHEVLEILNKTNVKIRIKKNSRIVHPNRLRI
FT                 SHIKLPPDK"
XX
SQ   Sequence 10772 BP; 3928 A; 2117 C; 2057 G; 2667 T; 3 other;
     gagctagaat aaaaattggg ggctcgtccg ggatataaaa agtgcgatct ttagcgggaa        60
     tgagtacgag gtcaagttcg aataagtccg aagtagatga actttataaa ctcggtttag       120
     agwgtggcgg taaacccaaa ccaggcgcat cgaaaacggt acacacatcc accccatcta       180
     aattcctcgc ttccaaacac gtcacctttt ctctggagga cacttcgata gcggaggagc       240
     gattcgaaac tgtttgcgaa acatttgaat ctaacattcc cacacgcgaa acgtcatcag       300
     ctagtaataa ttctgataat tttgacgaaa aagcaaaaaa cctagaatct ttaaaaatgg       360
     cgcaaaataa tcctttcgct acgctaaaat acgccgtcga cgccattcca tactttgacg       420
     gacaaaatat tccattgaat tattttatcg agggttgcga ggaggcgaaa tctatgcttc       480
     ctgatgaggc tgagcctcaa tttgctaaaa tcattagaac gcgtataatc ggagaagcac       540
     gtcgaaccat tcaggatcaa gactttaaca acgttgccca aatcactaaa tatttaaaac       600
     aaatttacgg tccttcgaaa aatgtctatc aactacaagg ggaattggga tgtgtctatc       660
     aagggaacga cgaagacgta ataacatacg cgaatagagt gaaaattttg gggaagcaaa       720
     tactcgaagc atatcgaagt tcgggacctt ctcttcccga acagaatatt aaagattcat       780
     tagaaaggga catgtgtaaa tgctttatca aggggttaaa accggagatc gaacaaagaa       840
     tattaagaaa tccacagatg gatgttaaag caaccgtagc cgacgcgata cgcatagaaa       900
     gagaattacg cgcaatgtca gatttacggc gcggtaatat cgcaaaaatg caaaatatta       960
     gcttacaacg cgaaacttgc caaatttgtt ataaagacgg acatttagcc agtaactgta      1020
     gaaaattcat tcaaaattca cagcagaatt acgaaatact aatwtgtcag atttgtaaaa      1080
     aacgtggtca cgatgctagt aaatgtcgaa tgcgcgaccc gcaatcacgg cgaactgtta      1140
     acgtgatacg agaaaatacg attgtctgtc aattgtgctc taaaaccggt cataacgcga      1200
     agtcatgccg tagtactaat caaaacaagc ctctcttgat ttgccagtgg tgcgatagac      1260
     agggacactc agctaataac tgctggaaaa agcaaaacga attgcgcgcg acagaaaata      1320
     aagcaagaat tatttgccaa aattgtaata atgcagggca cactgctagg gattgcagat      1380
     ccagaatgga tcgaactacg agcaataata acacaccatt ttgccgatat tgcaaaacgc      1440
     aagggcatct cctcgaaaac tgtgagttgc gcatcgcaag taataatcga agaatggcaa      1500
     aagattcggt aaactccaac ggcccctcga agccgggcgt gcaacagggg accgaacgga      1560
     ttccacgccc gtcgacatct tcggcgcctc aataaaaaac gctccgaacg ctcggtcagt      1620
     agcggtaaac ctcgataaac atagtcgcgt gccgaccgtt caggtagaaa tacgaaaaac      1680
     agtccctcac ataactctta tgttagacac cggttctgga cctaatataa ttaagaaaaa      1740
     ttttatacct gagggggtac gcattaatta ttctaacatt ctaaaattaa acggaataaa      1800
     tgattatcca gtctttactc ttggcgaaac tacgctaasc cttttcgaca ccttagtaaa      1860
     tttccacata gtacccgacg actttccgat accacaagct ggtatattag gcaacgattt      1920
     ctttaaacaa acatcatcga aaattgatta cgcacaagga tgtatagatg tatccggtat      1980
     ccaagtacct tttctctcgc cagaaactat agtggtatca cccagatcag aatcgttatt      2040
     ttatgtaaga gttggcaacc ctaatgtcaa aattggatat gtaccgaaat tgaagataac      2100
     ttacggaatc tatctagggg acacgatcgt ggaaaatgtc tcggggaaag catacttaaa      2160
     tatcataaac acgcgggacg aagaagtaga agtcagggtg ccgaccataa atcttagacc      2220
     tctgaatgag atggtcgacc tgtgtgaaac cagaataaag acgttagatt atcaggaaga      2280
     attaacaact tcacacccga attccttttc aagggaaacc aaacatattg atcctaaaga      2340
     agaattgtta aacgaaaatc aaaataaaaa tgtaataagt agagaggaag acgagattat      2400
     gaatataaat ggcattgaga ttgttaatga aaataaaaat ggaaataaaa ataagaatga      2460
     aagtgagaat gcaaagacga aagaagacgg aattataaat aacaaacata aagaaattaa      2520
     aacctccata aatggagata aaattaataa aaatttaaag gtcgaaaata aaaatgaaat      2580
     taaaatgaga ggaagtaaaa agaaaaatct taatttcgat actcagcgag agggaagtta      2640
     ccaaacctcc tctgagatat cctcccatcc caaaatcctc ggagagggaa gttaccaaac      2700
     ctcgtccgaa aatttaaaaa attctgagtt tcttggagat gaaaattgtc gaatcacttc      2760
     aagagataat tctggaattg ccgatggaag tttccgcact cctcgagcat tttccagctc      2820
     catcggttac gaggagggaa gttaccaaac ctcactacgt aatccgacac gatcctgtct      2880
     ggaggaaaac gacaatacta attcctcagt ctcgttaaaa ggtgttaaat tcccgagagt      2940
     tgggatgatc tcggaaaaaa cgaatggaaa aaatgaaccc tctcatatta ccgccaaaga      3000
     gcttatggaa aggatacaaa taaataagtc gaatgaaata aatcttggca aattaggaat      3060
     gaaaaacaaa aaaccgtctt cgagaatttt taaattaaga caaaatcaat ctcaagagat      3120
     attagacgaa tgtatacgca agcgcaaatc aaagcataag gagaaagtta tacaagggat      3180
     acagagtaat agcaaaggaa acggagctac cgaatgctta atactatcgg gagaaaacca      3240
     aagggataga ctcacaaaaa ttatagaatt attacgacta gagcacttga ataattatga      3300
     agaggagaat gtgataaatc ttataattaa tagtcaagac aggtttcata tacctgagga      3360
     aaaactgacg gcaactaatg ttctacgaca taaaatatca acaacagatg accagccgat      3420
     aaacacccgt cagtatagat ttccgcaaat tcataaagag gaaataaaca agcaagtagg      3480
     agagctgcta gaagggggca tagtaaaacc ttcacagtcg ccttacaata cgcccatatg      3540
     gattgtaccc aagaaagagg attctcaagg aaataaacga tggagaatgg tattagattt      3600
     ccgggcatta aatgacaaaa ctatcggaga tgcgtatcca ctaccaaata tagttgatat      3660
     cttagatcaa ttgggaggag ctcgatattt ttcggtatgc gatctagcct caggatttca      3720
     tcaaataaaa atggatccag cagatagcca taaaaccgct tttacaacac cttttgggca      3780
     ttacgaattt gatagaatgc catttggatt gaaaaatgct cccgctacct tccaacgatt      3840
     aatggattta gttttatcag gattacaagg aaaggaacta tttgtttata tggacgatat      3900
     attgttattt acgcgtcgtc attagaagag catgagagaa aatataatct tttaatagat      3960
     aaattacgcg aagcaaattt aaaattacag cccgacaaat gtgaattttt aaaatcagaa      4020
     gtaacttatt tgggacacgt tataggcaaa aacggagtta aacccgaccc aaaaaaatta      4080
     gaggctgtac gacgatttcc tagacccaag acacctaaaa acattaaaca atttctagga      4140
     ctagcgggat attacagacg atttatctct aatttttcta aattagcaaa acccttgaca      4200
     aatttattaa aaaatgacgt acgtttcgag tggacacaag aagcaagaag aatcatttga      4260
     aatattaaaa caaagattat gtgaagaacc cgtgttgcaa tatcctgatt tttcaaagcc      4320
     ttttatccta accaccgacg cttccggagt agccgtagga ggaatattgt cgcagggtga      4380
     aataaataag gaccgaccag tcgcgtatgc gtcgcgaact ctaactgata atgaattaaa      4440
     atacgataca tacgaaaagg aagcgctggc tatattatat tgtgttaaac atttccgccc      4500
     atatttatac ggccgaaaat ttactttagt cacagatcat aaacctctat tatggtttaa      4560
     aaacgctcaa gataccaaca tgagaatatt acgatggaga ttaaaattag ccgaatacga      4620
     ttacgatgtc gtatacaaag caggaaaaac taacgtaaat gccgatgcgt tatccaggaa      4680
     tccggtgaat tttgaagaag tgaactgcaa ggcaattatt gaccggagaa ctttaaatcc      4740
     caacgaagca aaggatgcag aaataatttc taaaatgtta gaagaatccg acgaggagga      4800
     agaaacagaa gaggacgaaa acttcgagtt atatctttca gatgacgagc aaacagaaaa      4860
     tttactacct gacgacaatc tgtttaggga taatacggat tcaataccct ttacacaaga      4920
     agaactggac gaattaccag tgcagcagac agagaaagca ttaatacacg atccaccgag      4980
     agccagaaga atgctcactc gcagccaaac gataaacgaa agaaataaac gcttaaattc      5040
     aacgcaacct caaggaagaa atgaacccaa agaaattgag gatcaaacca acaaaagcga      5100
     caaggaaaaa gagagtgacg aaaacactga cgatgaagga ggaagcgaaa taacaaatga      5160
     agaaaatgaa gagcttagta gtatagataa acttaaacca actatcattg accataagct      5220
     aatgaaaaac aatgttgttg attcccgcga attattattt ttgcggaaag ataacgtagc      5280
     atattttgtc gatgtcgatg gaaatccatt ggattctgga gcacgaaaat tactcgagcg      5340
     caacgaattg cctaccctca atgaactcgc tctgtgtaga ccgcaggttg taaaacgcaa      5400
     aaactatttt cacgtggcct tacccattga tgaagggtcg agagaagggc caacaatgat      5460
     tttaaattat ataacgcaaa ctctgatgga attacgaaaa ataacagagg aattaaaatt      5520
     agaaactatt agcattgcta aaacggattt tatttgcaac attccgtgga gcaatattaa      5580
     gacacaaata caaacgacct ttctcgactc attaactaaa ctaattattt gtaacggatt      5640
     agtaaaatat cctccgaaag atcttcgccc ttctataata ggcgaaacac attgctcacc      5700
     tacaggtgga catagaggcg ttactaaaac gtataacaga attaagcata attactattg      5760
     ggaaaatatg aaatctgacg tccaacggta tattcagcaa tgcttgcaat gtcaattgaa      5820
     aaagttagta cgcgttaaaa cgaaacaacc catgataatt accgatactc cgggaacagc      5880
     cttcgacaaa gtagcaatgg atattgtcgg gcctctacaa aaaactgaga gaggaaacga      5940
     atacatttta acactgcaag atcaattgac taaattcagc atgggaattc ccctaccaaa      6000
     tcaaacctcc gaaacaatag ccgaggcttt tgttaataaa ttcatttgta tattcggagc      6060
     acccaaagca atactaaccg atcagggaag aaattttgtc agcgatttaa tgagaaagat      6120
     tgcaaaactt tttagaatcc gtaagtttcg tacaaccgcc ttccatcctc aatccaatgg      6180
     atctctagag cgatcgcatc acgcactagg agagtatctt aaacaatatg caaacgaaca      6240
     agaacaatgg gaccgatggg ttagcctcgc aatgtttaat tataacacct gcgtacacga      6300
     agctacaaaa catactccat acgaattaat atttggaaaa attgcaagaa taccttcgga      6360
     aaaatttcta gcaccagaag ataaattaac tagctatgat gactatttag taaccttagt      6420
     cactcaactc cataaccttc gagggaacgc gcgtgaaaat atcatcaatg cgaaacataa      6480
     atcaaagaaa tattatgaca aaaaaatcaa ccctcaaatc tttaaacctg gggattacgt      6540
     atttctatta aagggaccta aaccgggtaa atttggggat cagtataccg gaccacacga      6600
     agtactagaa atattaaata aaactaacgt aaaaattaga ataaagaaaa atagtcgaat      6660
     cgtccatcct aaccgtttac gaatttcgca tattaagtta cctccagaca aataataaga      6720
     aaaaaaaaca taaccatttt cagatggatc tccataattg ctgggcagta ataatagcaa      6780
     ttttaacaat ccggtttcat aaaacgcatg ggataatagg ctatgactgc ggctcgccct      6840
     caacaaatct aacaacctta tccctactaa atatcgaaga atgcgacatc ccgccacaga      6900
     acgtaaattc aactaatgtc tatatacaac ttctacaaat aaacgaattc gagtcagtaa      6960
     aggttattca atgcaaggtc gaaatagaca gattaataaa aaaatgcgga atgttttccc      7020
     actccatgga tgttttaaat ggcaaatatt catatataga ggaaacatcg cgcgaagtat      7080
     gccaacgaat gcattcttat ggaacttatc agttacataa cggatatatc accggattaa      7140
     aaccgaatca taccactgcc cgaccagtaa cattggcagg acacgtagac gccgatggat      7200
     cgtgcaaggg gagcacgtat tcagatccgt acggcacgtg gactgacgtc gtggtactcg      7260
     ccagcataaa aatctcacta caagaatata tagccgacgt acgaataaat agtaatcgag      7320
     tgctactcag atccggagtg gcctgtgaac tcacaaccac tcattgcaca gatatagagg      7380
     gaggtgaaac ctactgggac ccagtgcccg ccgacacttg taaattcaac aattacggag      7440
     tattgtacag tgggattgca gacaaaataa tagataacgt aaatgaacaa caactagtag      7500
     tctattcatt aactgcacaa gatacaactt tcgccttgac tagcaaagga aaatacgcaa      7560
     catgcggcta tacactcact cgaaccgaac atcccaaatt aatcatcttc gaaacctcgc      7620
     gtggcgtaac gatcttcaaa caacgaacgc gtgtctctaa cctcgacata ttcacctaca      7680
     tgaattccaa attcgtatac gtcgaaaagc acatccgtac gcagataaat caattataca      7740
     gaaatatcct tttgcaacaa tgtgaactag agcagggaat gttaaaaaac gctttagcta      7800
     tagctactca aacacccgat atctttgctt attatctaat gaaaggacct ggatatatgg      7860
     ccctgttagc cggagaagta atacatatcg taaaatgcgt acccgtagaa gtaaaaatca      7920
     caagaactga caactgttac aatcagctac cggtcattcg gggaaacgaa acctattact      7980
     taacgccgca aacccatgta ctattgcgac aaggaactca gataaattgc aactctttcg      8040
     cacctactat gtatcaccta ggagactcat ggtataaact catgcctaaa cctgtggaat      8100
     cattaccgcc cacaattatg aaacctatga ccaaacctac gtggaaatat gttagccctg      8160
     gatcgctcgc tacaagcgga atatacaccg aaaatgatct caatgatcta cgagaccaca      8220
     tattgttccc tgctgagcga ccggcggtgc tcaacacggt agccaggcgg atgatgggac      8280
     aaccaatctc tctgaacggg gggtcactct caaatctatt agacgaagca tccataacaa      8340
     aaatcgctgc atccgcatgg aaaaaatttt ggaataaatt cttaattttc ggcaatatca      8400
     gtgccggggt aattggaata tacctcaccg ggagaatcat aaaactaata gtagacacaa      8460
     tcgtacatgg ttacgctttg cataccgtat atggatggtc catacatcta ctgggcgcca      8520
     tctgggactc tattacccat cttttattac tgttggggac aaaaaggttt caaaaacccg      8580
     agcaggccag cgcaccagag tctgacctgt atagtaagac ccccgaaaac caagtatacc      8640
     ctttattacc accagaggaa aaaccaggat tttcgttcga actaaaaaaa taataacaac      8700
     aaaacaacct cttttctttc cttctcctat ctactattcc ccctcccaac cacctaacaa      8760
     tcattaaact ttttagaagt gaagaaagta aaaataaaaa ggagaagaga agaatggaag      8820
     ccatcgatac cagccgtttg actcgtgggc gtctcgagtg taagattcta cgaatggaat      8880
     ctccgctcct gttttgggtg cggttaaaaa atggagaatc agctctgcaa gatctatcgg      8940
     aagaacttaa cttccgaatg aaccgcaaat ccaaagaact catttgctgg cccaacgaca      9000
     tagaggaaga caagcctgtt gccataaaag acggcgacgt atggcaaagg ggattgatta      9060
     cgggagtcaa cccggcccag aggaccgccc ggatcgatct cagggacata ggacgccaag      9120
     tgtggagacc attccatcaa atcttccgct tggaagggcg tttccaagaa ttatgctggc      9180
     aggctcttac ctgtggacta gcctacacag gaccggctaa accaactaga ttttggtcca      9240
     ggaaaactag agccttgtgc cgaatcctag ccgaaggacg cagtggatat attaacatcg      9300
     tgcgtccatt ggaaaacggg gccgcaatgg tcaaattagt cttgccgcac gaggacgact      9360
     ggggggtcac gaaccttcgt gacgcactgg tatctctagg ggaggcacga gtcgagaaag      9420
     aggcccgaat cgtggatacc ttcccagcga tctaaaaaat aagtctatat actcagttat      9480
     acaacctttg ttttttttat tatactatcc ttatttctgt tagttatatc ttttttttta      9540
     tctcgtatac ttatttagtc aataaagtaa tgtttaagtt gaacaatcgt aaacattata      9600
     atttaataat aatttaatca taataatttt gataacaatt acttaagttc cttttacaca      9660
     tatatcatcc acttccttta ttattaaact tattatatta atttttttct ttttgtggca      9720
     taaagaggga ggaaatgtaa ccaagtcgat taattcttta ttcatatcga tgctgcttga      9780
     gtgcctactg gagagcggga gcgcttatta tttttatttt tctctcctca tctgcaacca      9840
     ccaacaccct gaactacagc ataataatat taacaagtta gtggtaggat aataatccta      9900
     cacatctaat tgcccagtcg aataaattct catgcgaacg tcaccttacc tagtataaca      9960
     aatatatcac ataaccagac gatacgcaac gactgaggca ggtaaagagc gctaaaacgc     10020
     ctaatggcca cggcttggcc atttgtacta agaccccgaa aaaaagggag aagaggatag     10080
     aaaaaccatc ttgggatgta gaacatggaa atataattcc aaatcaagcg agacgcgact     10140
     ggtggtactc acgtaatata acatgtaaaa aaaagaagag agacaagaat ttgctgacgt     10200
     ttgttataca aaatcatttt cttcctcttg aacgctatat aatgaatacg atagagttaa     10260
     gccaaaatta tcataaatcc tttcgaaatt cttataattc cttcgaattt atttgtaatc     10320
     gtaataataa taataataat aataataata ataataataa taataataat aataataata     10380
     ctagtaataa tactcttctt atcgaatcca agcatacatc aagattttgc gcattcttca     10440
     ccctctacaa caaggagaaa taagtccttt caaaataaat acgcattaac aaatgttagg     10500
     catgaaacac ttaagatatt tttctttaaa aaaaaagggg gaggagagga gagtgaatga     10560
     tgcgcacaat ttaattttaa acagtattga gaatataatg taacgttagt aatgtaagcg     10620
     aagacgagga agaacgaggg aataaggaag gggttttggt ggtcgcctgt tccttccttc     10680
     ttcttcacaa aaaaaaggga accgaaagag aagaattatt atcctattgt tgcaaatgtt     10740
     gtgcaccccc aacatttgtc taagtcgggg gg                                   10772
//
ID   Gypsy-18_PBa-LTR repbase;    DNA;    INV; 2073 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2073
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 708-708 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2073 BP; 581 A; 589 C; 372 G; 531 T; 0 other;
     tgttacgtcc gggggacttc acgaattctt ctctttcggg aagaaaaaaa caacggctgc        60
     taatctgtaa acgaagcgct tcgaacgatc taaggaaacc ctaaataaat aaacaaaaat       120
     tcctctcgag atacgtctca ctatcaaaaa aaaaattctt gggataaaca gctttgtcgg       180
     caccgacaag tttatgacct accaataaaa aattaatatt aacaaaagca aattcctaac       240
     ggataagaaa cgcgtcggat cgttcgaggg tgacactccc caaattggtg gggaaactaa       300
     gggaaacgcc aatcaagaag aaacgattag cggccgttgg cggccacacc aatgaatgat       360
     tgagggtgtg gaatggcggg aaaattttta ctaactaatt ccatcattcg ctaggaaatc       420
     tggaaatata aaaacaacca caattcacag aacaccgctc ccctccttcc tctatactca       480
     caattttcct aaactatcat tcgacaagcc aacgcggaaa tccatcacgc cctcagatat       540
     tcccacccct tcggaaccct ttaaaaaccg cgacttggag cggatcgctc tcttcccgct       600
     tctcatcgct ccacgccttc acggacggga ccatccgaag ttgtcgaaaa atctttttta       660
     tcagttagaa tctgtgcgcg attcttacat ttttcgtgtg attcgatcca cgatccagcc       720
     tagccattac acttctcgtc catcaccagc ggccgctaca ataaaagtaa gtccatcttt       780
     atcacttttt cccgcggtag actggctgtt tggttcgcga cctctacata tttgtttcat       840
     taaaacactc caacattcca aattggcaag ccgccgatta actcggtgaa gctgccttcc       900
     ccgatttctc cacactccga cttggcaagc cgccgattaa ctcggtgaag ctgcctcccc       960
     cgattccaca acattccaac ctggcaagcc gccgattgat tcggtgaagc tgccttatca      1020
     cgattcctca atttctcttt catctgactc tcttttacat agtgaaccaa acgaacgcca      1080
     tcccgaatag acgaacgaaa cgggcattgc gacaccgtcg ggagaagtct aataagcgga      1140
     ttcgtcgcga aaccggccac gccgaagaac tcgcggagca gttgatagac gtagaaccga      1200
     gactagctaa catcaccttg caacagtacg ccaccgccct ccgctccgcg gcagattttg      1260
     aaaaacaatg tactccagag aacttcgacg tggagaagtt cttcaatctc gtccgccaat      1320
     ttccccgctc tcccacccat ccacctcctg gcaccttctt cattaaaaga aggttcaaac      1380
     ccgacagcca gttttgggat cagatctcaa aacaccaaat taccgatacc atccccatgt      1440
     atatttcccg tgatcctctt ccctacctcg tcccagtcaa ggctttccgc agcgctcacc      1500
     ctgatccccc gccacacctg caacccgatc ccatcgacat gctcgcgatc accaattttt      1560
     taccccaatt ggaacaattg ggtatataaa atccagattt tcttttgttt gttgttattt      1620
     attattattc aaaatttatg tataaaattt ttttttttct ttttgtaacc agtatttcaa      1680
     ccctttaatg tacacagaga aatttccgaa taacattgta attcattttt attattatta      1740
     ttaaatcagt taactcgaat tccgtctcaa tttctttacc ctaaaacttg accccgaacc      1800
     attcacggct ccctgaggat cgcacgaggt ccatccctgg taaaagagat tcggttctct      1860
     gaccaaaaaa cggaccaccg atagcgcggg cgcaggcaag ggtaataacg tcaccgacgc      1920
     tgacccgatt cctgccccct taacgcgcgt tcgactcgcg gatcgacctc acgacgtcgt      1980
     tccgtgagaa cagaaaaggt tccgtgcgtc cacccgagtt ctcctcctcc tgacgaaagg      2040
     tattatcttt cctccagaac cacggacgta aca                                   2073
//
ID   Gypsy-18_PPo-I repbase;    DNA;    INV; 835 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-835
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2988-2988 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..834
FT                 /product="Gypsy-18_PPo-I_1p"
FT                 /note="Gag."
FT                 /translation="PVSTHIXNSGNFAKCSTRFDGLKTSDVLAFIDAIEIY
FT                 KTCVNMSDDVALRGLPMLLTGLAATWWQGVKNSTPSWQAALESLRQTFGPR
FT                 LPAHKIFRLIFEREQQINETTDLFVCHIRALFAQLPPHSLSEDIQLEMTYG
FT                 LLHRRIREKVPRSCFTSFAELIAQARRIEDILNESRPLQTKSDVKPTLITL
FT                 PSNSTQPCYTPSPVHNKRPQCSYCKRYGHVKEACQKLAGKPLEVKEGVLEK
FT                 KXPAVTCFGCGTPGRIRSNCPTCKEKKSLEPVTSSFQ"
XX
SQ   Sequence 835 BP; 246 A; 192 C; 191 G; 203 T; 3 other;
     cctgtaagta ctcacataca kaattctggc aactttgcca agtgtagtac aagatttgat        60
     ggccttaaaa ctagcgacgt cttagctttc atcgatgcga tcgaaatcta caagacatgt       120
     gttaacatga gcgacgacgt agcgctgcgt ggattgccca tgttactaac gggactggcc       180
     gctacgtggt ggcaaggtgt taaaaatagt accccgtcat ggcaagcagc gttagaatcg       240
     ctaaggcaaa ctttcgggcc taggctgccc gcacacaaaa tcttcaggtt aatctttgaa       300
     cgcgaacaac agattaacga aacaacagat ttattcgtct gtcatataag agcattgttc       360
     gcgcaacttc cgccacattc tctatcggaa gatatacaac ttgagatgac gtatggttta       420
     ttacatagac gaatacgcga gaaagtacct cgttcttgtt ttacctcgtt tgcggaactt       480
     atagcccaag cgagacgtat agaggacatc ctaaatgagt ctcgcccatt acaaacaaaa       540
     tcagacgtca aacctacgtt aatcacgttg ccgtcgaata gtacacagcc atgttacact       600
     ccgtcgcctg tacacaataa acgacctcag tgtagttatt gcaagcgtta tggccatgtt       660
     aaggaagcgt gccagaaatt ggcgggaaaa cctttagaag tcaaagaggg cgtattagag       720
     aagaaggmac cggcagttac ttgcttcggt tgcgggacac ccggacgwat ccgttcgaac       780
     tgcccgacgt gtaaggagaa gaagtcgtta gaacccgtaa ccagttcgtt ccaat            835
//
ID   Gypsy-18_RP-I repbase;    DNA;    INV; 6674 BP.
XX
AC   ACPB02042122;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_RP_;
KW   Gypsy-18_RP-LTR; Gypsy-18_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6674
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02042122; Positions   19115   12442.
XX
CC   Positions [4247-4708] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           291..1346
FT                 /product="Gypsy-18_RP-I_2p"
FT                 /translation="MTSKPITQDILKCIPEYDGTSYDLYHFINTCEELYDT
FT                 YCKPNINEREINHWLLVKTALIKIKGPAKIVIYNNNCQTINEIIRALRSNF
FT                 ADNRSVPDLFSELNRMRAKPKEHPIEYLNRLDEKRTIILTRYKLDGLSGII
FT                 LTELTRQLDAHLVRIFLYGIHPTLGAHLQSLQCQTLDDTRAKIINDCGIVL
FT                 HQLRLTNTPNNESTSYTDSNTHPKNKRPNTTHNNRNNPHHHFNNTFRNFPH
FT                 NNYHQQNYPQHYPQNSHYYPQNSHQNRKPQSNHPMWTPQGSSPFPSKPFNP
FT                 LSQNTVSMRTIKPQELNMTEKRRRNEVNELKTQVEQLTQTVTKLTDHFLVI
FT                 GPGQHPPNT"
FT   CDS           1583..5146
FT                 /product="Gypsy-18_RP-I_1p"
FT                 /translation="MIKFYIFPFSPRYNFLLGYETLKLIDASLDFKNNLLR
FT                 YDSSIKELLFSIREENEERTDLKKGKKIIINKNKREEKKLNEENLNNKTEK
FT                 IKINLKKGYNIVEIPVKNRCECGLIDNYEFKSDKIEIGKGLVKTENGKAKC
FT                 LIYAHEVVTICPEPMELDEIVSAHRAPPTTNCPGELETIKTEIPALIRTSH
FT                 MNEEEKNEIIQLVCKYPEIIKRENDKLTSTKLLKHKIVTKDENPVYTRNYR
FT                 HPEAFRADIKDEIQKLLENKIIQSSNSPYNSPIWIVPKKPDASGKRKIRMV
FT                 IDYRKLNEKTIDDKYPLPNIEDLFGRIGRATYFSAIDLASGFHQIEMDPDS
FT                 IPKTAFSTDTGHYEFLRMPFGLKNAPPTFQRAMNILFADSPNILVYMDDII
FT                 IFSDNLTEHLKHLQKVFLKLKEHNLKIQLDKTEFFKKELLYLGHIISNKGI
FT                 SPNPNKIETIKNFPLPKTKKQIKQFLGLTGYYRKMIKNYAKIAKPLTNALR
FT                 NDGEINTDDKEFQDSCTTLKEMLQNHPILQLPNFNKEFYLTTDASNTAIGA
FT                 VLSQNVEGKDLPIAYASRTLSKSEERLSTIEKELLAIVWSCKHFRPYLYGR
FT                 KFSIFTDHKPLQWLHNMKEPTSKLLRWKCALTDYEFDIKYIPGKSNKVADA
FT                 LSRMPQEVTTMDTPPIDSNPDDHSEVNPAEVMDEFLRDYPPQNDTSSLATI
FT                 HSQESSTDQVTLMDRDKILNVEPNQIIIDRGPPNVKVIKIFNKTRIKITVS
FT                 NININEQLDEFILQYLKPKTLYGVYCQTSDILQSEYDSIFNHLQTLIINKY
FT                 PSTKIRRYHKFLLDVEDDPEQREVISNYHAGKTYHRGIAESYEHIRRKYYW
FT                 PGMHKDITDFINQCTTCLKIKYDRRPIKLQYQVTPTPNKPFEKLAADVFTF
FT                 NSQKFLTIIDLFSKKLTVYPITTHNALEIQEKFQIYFSLFPLPASIQMDNG
FT                 REFQNQGVKNLLSLYGIESYYTTPAHSQSQGTIERVHSTLIELLNAIQLQN
FT                 KTNKLERNITLAVIAYNNSLITNLKLSPMEISFGTNNLNPQDIQNTLLDEK
FT                 TKQYHQDLETIHKAIKENIEKEKLQRTQRSNKTRETNINIPKTVYIKSTKH
FT                 KKHTPKNLPGKHNPETKLVKLTNSKSCKEFKIHPDRIKRPRRITRKTSITG
FT                 NHDRPDQPTTSHNTNTSQTTTSLPNNRLD"
FT   CDS           5064..6650
FT                 /product="Gypsy-18_RP-I_3p"
FT                 /translation="MIAQINRLLATILILVKQQQAYQITDLTKSKGIIGLK
FT                 LQPSYVINNTYTYIHNINIEEIDQEIKQIEQNLKSINPRNRNPHYINIINS
FT                 FLLYAKDKLAHIYLNKNPRQKRGLINGLGTAISWITGNMDADDKEKYDKII
FT                 KQIANNEHALQHNVQSQLSTNQLIINKFNADLDIIRNNNDKAKSYLQIISN
FT                 ETTTLQLAEQYNFYLINLQLLINKINDIDDSVEFCRNGIVHSSVITHSELS
FT                 HIITETGVHFIDNDPEILWQVGTIKCALHRNFISYFIELPLKSESYETIFL
FT                 LSHPFKLNQETATIYAYPSMILRNYDNLYSSDNCILIKDKYYCKNIKRIQD
FT                 NNCIENILMNKENNCKTIILANPAPFVKYINVINQYLFYNYDNIMLNINNV
FT                 TNITIYSKYCYLLHLDENERIYGIPQPYTYWESKLLDVENSNINHPILQNV
FT                 SFEKLHHLNVNIKPLEILNEFPYDNTHFITLYSIIGLIIIISLCYLLLKNW
FT                 LYRKFRKPGQPAEVGIKLELPPAPTLNPSPRTA"
XX
SQ   Sequence 6674 BP; 2669 A; 1412 C; 950 G; 1643 T; 0 other;
     taactggcgc ccgaacaggg acctgcaaag tcaatagaat aacattggct tcagtctcta        60
     ctgtttattg cagttagcta ctgtgatcat ttatcccatt agcgaacttc atcaacgtgc       120
     gacctattgt ctcactcaag aaagaagaca ctctggcgaa ctcccagcat aaacaactaa       180
     agcagactac caacgactca tccgacgaag aacagtctac atcaagaacc catactatac       240
     actggaaacc aggtacttta aatacaataa ctacaataaa gcacaacacg atgacttcca       300
     aacccatcac tcaagatatc ttaaaatgta ttcccgagta cgatggcacg agttatgacc       360
     tgtaccattt cataaacacg tgcgaagaac tttatgatac gtactgtaaa cccaatatca       420
     atgagcgtga aatcaaccac tggcttttag taaagactgc tttaattaag atcaaaggcc       480
     ctgcgaaaat tgtaatttat aataataatt gtcaaacaat aaatgaaatt ataagggctc       540
     ttagaagtaa ttttgcagat aatcgatcgg tgcctgatct tttttcagaa ttaaaccgaa       600
     tgagggcgaa acctaaagaa cacccgattg aatatttaaa caggcttgat gaaaaacgaa       660
     cgataatatt aaccagatat aaattagacg gactttccgg tattatatta accgaactta       720
     cgagacagct agatgcccac ctagttagga tattcctcta cggaatacac ccaaccctgg       780
     gtgcacacct acaatcccta cagtgtcaaa ccctagatga tacacgagca aagattataa       840
     acgattgcgg aatcgtttta caccaactaa gattgacaaa cactccaaat aacgaatcaa       900
     cttcctacac ggatagtaac acacacccta aaaacaaaag acctaacaca acacataata       960
     acagaaataa tcctcaccac cactttaaca atacatttag aaattttccc cataacaatt      1020
     accatcaaca aaattaccct caacattatc ctcaaaattc tcattattat ccccaaaatt      1080
     cccaccaaaa tcggaagccc caaagtaatc atcccatgtg gacacctcaa gggtctagcc      1140
     cattcccaag caaacctttc aacccacttt cccagaacac ggtatctatg aggactatta      1200
     aaccacaaga actaaacatg acagagaaaa gacgccgcaa tgaagtaaat gagttaaaga      1260
     cgcaagtgga acaactaaca cagactgtaa cgaaactaac ggatcatttt ttagtaattg      1320
     gcccaggcca acacccccca aacacttaga gttcgaatta aaaaacctgt ccaaatcatt      1380
     accctacttc ttagacacgg acaacaacaa atggctagtt gacacgggct cgcaaaaaaa      1440
     ttatgtcacc cccacaacgg taccaactaa cgctaagaca tacaaagaac gatttctggt      1500
     aaaaactccg acaggcgaac aaacaggatc cgagtacatc ttattaaatt taaaaaccat      1560
     cttccccgac caacgtgact taatgataaa attttatata ttcccttttt ctccccgtta      1620
     caatttctta cttggctatg aaacactcaa actgatagac gcatccctag actttaagaa      1680
     taacctacta agatacgata gtagtataaa agaattatta tttagcatca gggaagaaaa      1740
     cgaagaaaga acagacctaa agaaaggtaa gaaaataatt ataaataaaa ataaacgtga      1800
     agaaaaaaaa ttaaacgaag aaaatttaaa caataaaaca gaaaaaatta aaataaattt      1860
     aaagaagggc tacaatatcg tagaaatacc cgtgaaaaat cgctgcgaat gcggactaat      1920
     agataattac gaatttaaaa gcgataaaat agaaataggt aaagggttgg ttaaaacaga      1980
     aaacggtaag gctaaatgtt taatctatgc acatgaagtc gtgaccattt gtcccgagcc      2040
     aatggagcta gatgaaatcg tttctgccca ccgagctcct cctacgacca attgtcccgg      2100
     agagctagaa acaataaaaa ccgagatacc cgccttaatt agaacctctc atatgaatga      2160
     ggaggaaaaa aatgaaatca tacagctagt atgtaagtac ccggaaataa taaagaggga      2220
     aaacgataaa ttaactagca ctaaattatt aaaacataaa atcgtaacaa aagatgaaaa      2280
     cccagtctat acaagaaact acagacaccc cgaagctttc agagccgaca taaaagatga      2340
     aatacaaaag ttgctagaga ataaaataat acagagtagt aattcaccat ataactcccc      2400
     aatctggatt gtcccaaaaa aacctgatgc ttcagggaaa cgtaaaatta gaatggtcat      2460
     tgactataga aaactgaatg aaaagacaat agacgataag taccccctcc caaacataga      2520
     agacctattt ggtagaatag gcagagccac ttatttttca gctattgatc tggcctcagg      2580
     attccaccaa atagagatgg atcccgattc aatcccaaag acagcgttca gcacggatac      2640
     aggacattat gagttcctca gaatgccgtt tggactaaag aacgctcccc caacatttca      2700
     gcgggcaatg aacatattat ttgcagactc cccaaatatc cttgtctata tggatgacat      2760
     aatcatcttt tccgataatt taacagaaca tttaaaacat ttacagaaag tattcttaaa      2820
     actaaaagaa cataacttaa aaattcagtt agacaagacc gaattcttta aaaaggaatt      2880
     attatacctc ggacatataa tttctaacaa aggaatatca cctaacccaa acaagataga      2940
     aactataaaa aacttcccac tacccaagac caagaaacaa ataaaacaat ttttaggatt      3000
     aactggttac tataggaaga tgatcaagaa ttacgctaaa atagcaaaac ccctgacgaa      3060
     cgctttaaga aatgacggag aaattaatac agatgataag gaattccaag actcatgtac      3120
     tactctaaag gaaatgctcc aaaaccaccc tatactccaa ttgccaaact ttaataaaga      3180
     gttctattta acgaccgacg cctctaatac agcgataggc gcagtcctct cccaaaatgt      3240
     cgaaggcaag gacctcccga tagcctatgc ctcgcgcaca ttaagtaaat ctgaagaaag      3300
     gctgagcacc atagagaagg agctgttagc catcgtttgg tcatgcaagc acttcagacc      3360
     ctacttatat ggtagaaaat tcagtatatt caccgaccac aaacccctcc agtggttaca      3420
     caacatgaaa gaacccacat ccaagctact aagatggaaa tgtgctttaa cggattatga      3480
     atttgacata aaatatattc cgggaaaaag caataaagta gcagacgcgt tatcgcgcat      3540
     gccacaagaa gtcacaacta tggacactcc ccccatagac agtaatcctg acgaccacag      3600
     tgaagtcaat ccagcggaag tcatggatga attcctgagg gattatcccc ctcaaaatga      3660
     cactagtagc ctagctacca tacattccca agaaagctct acggaccaag taactcttat      3720
     ggaccgagat aagatattaa acgtcgaacc caatcaaata attattgaca ggggaccacc      3780
     caatgtaaag gtaataaaaa tcttcaacaa aactcgtatt aaaataactg ttagtaacat      3840
     aaacataaat gaacaattag atgaatttat attacaatat ctaaaaccta aaaccttgta      3900
     cggcgtttac tgccaaactt cagacatact acaatccgag tacgactcta tattcaacca      3960
     cctacaaacg cttataatta acaaatatcc atcaactaaa attcgtcgtt accacaaatt      4020
     cttactggac gtagaagacg atccggagca acgagaagtt attagcaatt accatgcggg      4080
     aaaaacctac catcgcggga tagcggaatc ctacgagcat atccggagga aatactactg      4140
     gcctggtatg cacaaagata taacagactt tataaatcaa tgcacaacat gtttaaaaat      4200
     taaatacgac agacggccta tcaaacttca ataccaagtg acccctacac ctaataaacc      4260
     cttcgagaaa ttagctgctg atgtattcac ctttaattct caaaaattcc tcaccataat      4320
     tgaccttttc agtaaaaaat taacagtcta tcctataaca acacataacg ctctagaaat      4380
     ccaagagaaa tttcaaatct acttttcctt atttccttta cccgcctcca ttcaaatgga      4440
     caacggcaga gagttccaaa accaaggagt aaaaaacctt ctctcattat acggtatcga      4500
     gtcctattac acaactccag cacactccca atcccagggg acgattgagc gagttcattc      4560
     taccctcata gaattattaa acgctataca actacaaaac aaaacaaata aactagaaag      4620
     aaacattacg cttgccgtaa tagcatacaa taacagccta atcactaatc taaaattatc      4680
     cccaatggaa atatcctttg gtacaaataa cctcaacccg caagacattc aaaataccct      4740
     actcgacgaa aagactaaac aatatcacca agacctagaa actatacata aagcaattaa      4800
     agaaaatata gaaaaagaaa aattacaaag aacccagaga tcaaataaga cgcgcgaaac      4860
     aaatataaat atacccaaaa ctgtatatat aaaatcgact aaacacaaga aacacactcc      4920
     taaaaatcta ccgggaaaac ataatcctga aactaaatta gtgaaactta caaattctaa      4980
     atcttgtaaa gaattcaaaa tacatccgga tagaataaaa agacctagaa gaataacacg      5040
     taaaacttct attacaggaa accatgatcg cccagatcaa ccgactacta gccacaatac      5100
     taatactagt caaacaacaa caagcttacc aaataaccga cttgactaaa tctaaaggca      5160
     ttattgggtt gaaactacaa ccatcatacg taattaataa tacttataca tatatacaca      5220
     acattaacat cgaggaaatc gaccaagaaa tcaagcagat agaacaaaat ctaaagtcca      5280
     taaaccctag aaaccgtaat cctcattaca tcaatataat caattcattt cttctatacg      5340
     ctaaagataa gttagcacac atatatttaa ataaaaaccc cagacagaaa cgcggcttaa      5400
     taaatggctt aggaaccgca atttcctgga taactggaaa catggacgct gatgacaagg      5460
     aaaaatacga caaaataatt aaacaaatcg caaataatga gcatgcttta cagcataatg      5520
     tgcaaagtca attatctaca aatcaactta ttataaacaa attcaacgca gatttagaca      5580
     taataagaaa caataacgac aaagctaaaa gttatctgca aattatttca aacgagacga      5640
     caactctgca attagcagag caatataatt tttatttaat caatttacaa ttgctaataa      5700
     ataaaattaa tgatatagat gatagtgtag aattttgcag aaatggcata gtacattcta      5760
     gcgtaatcac tcatagcgaa ctttcacaca tcataacgga aacaggtgtt cactttatag      5820
     ataatgatcc ggagatctta tggcaagttg gcacaataaa atgcgccttg cataggaact      5880
     tcatatctta tttcatagaa ctacctttaa agtctgaatc atatgagaca atattccttt      5940
     tatctcatcc ctttaaactt aatcaagaaa ctgctactat ctatgcctat ccttcaatga      6000
     ttcttaggaa ttatgacaat ttatattcta gcgataactg tatattaatt aaagacaaat      6060
     attattgcaa aaatatcaaa agaatacaag ataataattg tatagaaaat atattaatga      6120
     ataaggaaaa taattgtaaa actattatat tagctaatcc agcaccattt gtaaaatata      6180
     ttaatgttat taaccaatac ttattttata attatgataa tataatgtta aatattaaca      6240
     atgtaaccaa cattactatc tattctaaat attgctatct cttacactta gatgaaaatg      6300
     aacgtatata tggcattccc caaccatata cttattggga aagcaaatta ttagatgtag      6360
     aaaactcaaa tataaatcat cctatcctcc aaaatgtctc cttcgaaaaa ttacaccacc      6420
     taaatgtaaa tataaaacct ctagaaatac ttaacgaatt cccttacgat aatacccatt      6480
     ttataactct ttattctatt ataggattaa taataatcat ttcattatgt tacttgttat      6540
     taaaaaattg gctttataga aaatttagga aaccgggtca acccgcagaa gttggtatta      6600
     agctagaact tccaccagct ccaaccctca acccttcgcc gaggacggct taaatcttaa      6660
     ggagggagga gtta                                                        6674
//
ID   Gypsy-18_RP-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   ACPB02042122;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_RP_;
KW   Gypsy-18_RP-I; Gypsy-18_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-221
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02042122; Positions   12441   12221.
XX
SQ   Sequence 221 BP; 65 A; 47 C; 36 G; 73 T; 0 other;
     tgcacactat ccacacagac acccacctgc acagataaga cgcttgccaa tgggatatat        60
     acccctggaa acaggagatg gcagagatac tcgttacgta cttcattcat tagacattat       120
     actggttgtt taaagccaaa gtgttgtaat ctttctcagt gtgtattcct tgttaataaa       180
     gtttttgttt tttaaaaact ttacttcttc atcgattcac a                           221
//
ID   Gypsy-18_SI-I repbase;    DNA;    INV; 4575 BP.
XX
AC   AEAQ01023712;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_SI_;
KW   Gypsy-18_SI-LTR; Gypsy-18_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4575
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023712; Positions     296    4870.
XX
CC   Positions [3271-3780] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..1117
FT                 /product="Gypsy-18_SI-I_2p"
FT                 /translation="MPLMHDDEGQASIQTPRQPLVQPAILEPPGYFMPGPE
FT                 VSRVGMRMPEFSPTDPELWFSIIDRSFQAAGITVDSTKFGYALTAIGPRYT
FT                 AEVRDIVLNPPEERAYEILKAELIKRLSSSQEHKTRRLLEHEEIGDRKPSQ
FT                 FLRHLRSLAGNVVGDKVLRTIWLSRLPAHIQPHLVTRTEDSLDQVADIADT
FT                 IMEATRAPPLQVAETTPSSFSRSAGQDDATSLEAKINLQLAQMRLSMQQEM
FT                 AEQLTAIRKSIEAIGELERGRSHERRYTRPRSRSRSRPRAHGHATNGLCYY
FT                 HWRFGPDARRCEAPCSSQQQTGNATASR"
FT   CDS           1024..4257
FT                 /product="Gypsy-18_SI-I_1p"
FT                 /translation="MLLSLAFRPRRQTMRGSMLLTTANGKRNGQSLMAASD
FT                 SGQLTRRLFVTDHDTRVSFLIDTGADLCVYPRRMVRGPRQKSNYELSAANG
FT                 TTIHTYGTESLALNFGLRRVFAWRFVVADVSRPIIGADFLSFYGLLVDLRN
FT                 GRLVDGMTSLTVQGRCLRCETPSIKTVTGATPYHELLMQYPDVTRPEGRPR
FT                 ETKHDTRHFIKTTPGPPVVGRPRRLAPERLAAAKREFQRMMELGIVRPSKS
FT                 CWSSPLHMVPKKGEEWRPCGDYRALNARTIPDCYPVRHIQDYAQNLQGKKI
FT                 FATLDLVRAYHQIPVAEEDIPKTAITTPFGMYEFPYMSFGLRNAAQTFQRF
FT                 IDEVLQGLEFSFAYIDDILVASSTEEEHKEHLKILFERLQKYGIVINPAKC
FT                 VFGQPEIQFLGYLVTGEGTRPLPERVQAIRQYQMPRTAKDLRRYLGMLNFY
FT                 RRFLPRAAESQAPLNDLLQDNAKGKEPVPWTPQAQRAFELTKESLAQAALL
FT                 AHPRMSAELALFTDASDHSVGAVLQQRGDNGWEPLAFFSKKLSPAESKYSA
FT                 FDRELLAVYLAIKHFLHMLEARVFTVYTDHKPLTFAFRQKPDKCSPRQFRH
FT                 LDFIGQFTTDIRYISGADNIVADTFSRIDEVRSPLDYAALAASQKSDEELK
FT                 DFLSQESSLWLKEVEIPGAGVTVWCDTATATPRPFLTKIFRRAAFESIHNL
FT                 AHPGVKATAKLISQRYVWPSMNTDCRNWARACVPCQRSKITRHVVAPVGKF
FT                 SAPSSRFEHIHIDIILMPSSEGKRYCLTCIDRFTRWPEAFPLEDQEAETVA
FT                 RAFYEGWICRFGTPLRVTTDQGRQFESHLFRQLSELTGTAHLRTTAYHPQA
FT                 NGMVERFHRQLKAAVKCHANSRWTQVLPTVLLGIRAAWREDLQATAAELVY
FT                 GETLRLPGQFLTQRPMENSDDGANFIKELRHRFDDLRPIDGTRHGERRPFV
FT                 FKDLGTTDQVFVRHDGPKTMLQSPYDGPFVVVRRDDKNFIISMHGKNVTVS
FT                 IDRVKPAYLLSDSLTDAGETPPEETQGHSEDSTRGIRREQDENAPTPREQG
FT                 ETVTRAGRRVRFPDRFQAGLR"
XX
SQ   Sequence 4575 BP; 1259 A; 1103 C; 1199 G; 1014 T; 0 other;
     tctccgtgcg cctataccat tcccacacca aagtggtgcg cccgacgtga tcattctttt        60
     tttttacgac caagcgcaaa gtttcgcgga attgtgacaa ttaacgcgtg tttgtgagtg       120
     aaattgtgag tgcacggcca gacagaagtg cagcaacatg cctctcatgc acgacgacga       180
     gggacaggcg tcgatacaga cgcctaggca accgctggtg caacctgcga tattagagcc       240
     gccaggatat tttatgcctg gacctgaggt gagccgcgtg ggcatgcgaa tgccggagtt       300
     ttcgcccacg gatccggaat tatggtttag catcatagac cggagttttc aagccgcagg       360
     aataacggtc gattcgacga agttcgggta cgcgttgacg gcaatcggtc cgcgttatac       420
     cgccgaggtg cgagacatcg tactgaatcc gccggaggag cgcgcgtacg aaatattaaa       480
     agcagaactt attaaacgcc ttagctcatc gcaggagcat aagacgcgtc gcttactcga       540
     gcacgaggag atcggcgacc gcaagccatc acaatttttg cgtcatcttc gtagcctcgc       600
     cggcaacgtt gtcggcgata aagtattgcg aacgatttgg ctgagccgcc tacccgctca       660
     tattcagccg catctagtga cgcgaacgga agattcgctg gatcaggtgg cggacatcgc       720
     ggatacgatt atggaagcga cgcgtgcccc gccgttgcag gtcgcggaaa cgacgccgtc       780
     ctcattttcg cgcagcgcag gacaggacga cgcgacatcc ttagaagcaa aaattaactt       840
     gcaattagcg cagatgcgct tatcgatgca acaagagatg gcagagcagc tgacggccat       900
     tcgaaaatct attgaggcga tcggcgagct cgagcggggc cgtagccacg agcgacggta       960
     cacacgcccg cgttcgcgtt cgcgttctcg cccgcgagct catggccatg caaccaatgg      1020
     cttatgctac tatcattggc gtttcggccc agacgccaga cgatgcgagg ctccatgctc      1080
     ctcacaacag caaacgggaa acgcaacggc cagtcgttaa tggcggcaag cgattccggc      1140
     cagttgacac gtcgcctctt cgtaacagac cacgatacga gagtcagttt cttaattgac      1200
     acgggagctg atctttgtgt ctatccgcgg aggatggtgc gtggtccgcg acaaaaatcg      1260
     aattacgagc tgtcggccgc aaacggaaca actattcata catatggcac agaatctttg      1320
     gcactgaact tcggattgcg acgagttttc gcgtggcgtt tcgtcgtagc agatgtatcc      1380
     aggccgatta tcggggccga cttcctttcg ttctacggac tgctggtaga tctgagaaat      1440
     ggtcgactcg tggatggcat gacgagtctg acggtgcaag gacgatgttt acgatgcgag      1500
     actccgagca ttaaaacggt aaccggagca actccgtatc acgagttgct gatgcaatat      1560
     cctgacgtga cgaggccaga aggacggccg agagagacca agcatgatac acggcacttt      1620
     atcaagacga cgccgggtcc gccggtggtc ggtcggccac gaagactcgc gccggagcgg      1680
     ttggcagccg cgaaaagaga attccagagg atgatggaac tcggaattgt acgaccatct      1740
     aaaagctgtt ggtcctcgcc cctgcatatg gtgccgaaga aaggagaaga atggagacct      1800
     tgcggagatt acagggcgct caacgcacga acgattcccg attgctaccc ggtgcgtcat      1860
     atccaggatt atgcacagaa cctacaggga aagaagatct ttgcaacgtt ggatctcgtt      1920
     cgagcatatc atcagatccc ggtagcggaa gaagatatac caaagactgc gataacaaca      1980
     ccgtttggta tgtatgaatt tccgtacatg tcgttcgggc tgcgcaatgc cgcgcagacc      2040
     tttcagcgct tcatcgacga agttcttcag ggtctggaat tcagttttgc atatatcgac      2100
     gatatactgg tcgcatcgtc aacggaggaa gagcataagg agcatctcaa gatactattt      2160
     gagcgactgc agaagtacgg aatcgtaatt aacccggcta aatgcgtatt tggacagcca      2220
     gaaatacagt ttctcggata cctggtgacg ggagaaggaa ctcgaccctt gcccgagcga      2280
     gtgcaagcta tccgacaata ccaaatgcca aggacagcca aagatcttcg gcgatatcta      2340
     ggcatgttaa acttttatag aaggtttctg ccgagagctg ccgaatcaca agcaccgctc      2400
     aatgaccttc ttcaagacaa cgcaaaagga aaggaaccgg taccgtggac accacaggca      2460
     caacgagcgt tcgaattaac aaaagaaagc ttggcacaag ccgctttgtt ggcacatcca      2520
     aggatgagcg cggagctggc tttgtttaca gatgcatctg atcatagcgt cggagccgtg      2580
     ctgcaacaac gaggtgacaa tggttgggag ccattagcat tcttttcgaa gaaattaagc      2640
     ccagccgaat cgaaatatag cgcatttgac agagagttat tagcagtgta cctcgcgatt      2700
     aaacattttc tgcatatgtt agaggcgcga gtttttacag tgtatacaga ccataaacca      2760
     ttaaccttcg cgtttcgaca aaaacctgac aagtgctcac cacgtcaatt tagacattta      2820
     gactttatag gccaatttac aacggacatt cgatatatat ccggagcgga taatattgtt      2880
     gccgatacat tttcgagaat cgacgaagtg cggtcgccgt tggattatgc agcattagcg      2940
     gcgtcgcaga aatctgacga ggagctaaaa gattttttga gccaagaatc gagtttatgg      3000
     ttgaaagagg tcgagatccc tggagcagga gtgacagtgt ggtgcgatac agcaactgca      3060
     acgccgagac cgtttttaac gaagatcttt cgccgagcgg cattcgagag catccacaac      3120
     ctggcccatc caggagttaa agcaacggct aagctcatat ctcagagata tgtttggccg      3180
     tcaatgaata ccgactgccg aaattgggct cgtgcatgcg taccgtgcca gcgatccaag      3240
     attacgcgac atgtggtagc gcccgtcgga aagttttctg caccatccag tagatttgaa      3300
     catatccaca tagatataat tttgatgccg agctccgagg gaaagagata ctgcctcacg      3360
     tgcatcgacc gtttcacacg atggccagag gcattcccgc tggaagacca agaagcggag      3420
     acggttgcta gagcttttta cgaaggatgg atttgccgat tcggaacacc tctccgagtt      3480
     actactgatc agggacgtca atttgagtcc catctctttc ggcagttgag cgagttgacc      3540
     ggaacagcac acctaagaac aacagcatac cacccgcaag cgaatggtat ggtggagaga      3600
     tttcatcgtc agcttaaagc ggcggtgaag tgtcatgcga acagccgctg gacccaagtg      3660
     ctgccgaccg ttctgctagg gatacgagcg gcctggagag aggatctgca agcgactgca      3720
     gcggaacttg tttacggaga gacacttcgt cttccgggac agttcctgac tcaacggccg      3780
     atggagaatt cagacgatgg cgctaatttc ataaaggaat tgcgccaccg ttttgacgat      3840
     ctgcgcccga tcgatggaac ccgccatggg gaacgacgtc cgttcgtctt caaggacctg      3900
     gggacaaccg accaggtgtt cgtccgacac gacggaccaa agacaatgtt gcaatcacca      3960
     tatgatggcc cgttcgtggt cgtgagacgt gatgacaaga atttcatcat aagcatgcac      4020
     gggaaaaatg taacggtttc aatagaccgt gttaaaccag catatctgct ttcagattcg      4080
     ttaacagacg ctggcgaaac accaccagaa gaaacacaag gacacagcga agatagcact      4140
     cggggcattc gtcgagagca agacgagaac gcgccgactc ccagggagca aggagaaacg      4200
     gtgacgagag ccggacgaag ggttcgcttc ccggatcgtt tccaggcggg cctcagataa      4260
     caataagatt tatccaaaca tgcatctatt ttatatgaca aaacgttaaa tatttataga      4320
     tgtaaaaaga tcggaaacac gtattattat tataattaat cattaacatg catttacgca      4380
     atttgcttat tttagttatc ttaattcatt attttctttc cttgcattta ttgtaattaa      4440
     gcttagaata tttatcgtac tgctggtgca ttactggcag gggggtcatg tggcaatcaa      4500
     ttgccacaat cctcatacaa aagaaaaaga aaaggaaaaa gaaacaaaaa agaaaatttt      4560
     caccaaccga acata                                                       4575
//
ID   Gypsy-18_SI-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   AEAQ01023712;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_SI_;
KW   Gypsy-18_SI-I; Gypsy-18_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-280
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023712; Positions      16     295.
XX
SQ   Sequence 280 BP; 84 A; 53 C; 52 G; 91 T; 0 other;
     tggtctccgg atgttagtca taaaccttct aacattcggt aatcataaat gttgcatatt        60
     gtcattgtta gagcacgttt taacccgctc aacgtacaat agttaagagg tgaaatggtt       120
     tgcctggaga agacatgaag gcagatctct ctcgactacg gacatgaacg cgtctccgcc       180
     gcgcaatcaa tttggatatc gataagttta gttttccctt gttatatttg ataatataaa       240
     gtaaagacta tatttataca ttaactgact atttcatcca                             280
//
ID   Gypsy-18_SiCu-I repbase;    DNA;    INV; 4498 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4498
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5042-5042 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4307
FT                 /product="Gypsy-18_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSASDSESSDYCLNKLFETPKKKKKKKKVPPPPTKVK
FT                 SATDPPAEPTPPSSTTEKKVKKNPPPXEPISSTSTPPPPEKPVPPQPPPKP
FT                 KKKKXVVVLPVSDIEMIGNLKTFDSSVDDFEMWIGAFRAFLKANKLKDDAT
FT                 DADQCMGIFVSSLGLPTYTLLVNLLAPDDPSTKKLSDLITALKDHFKPAPK
FT                 AIAERYRFTGRRQQQGESVAVFLSELRKLALNCQFADLETRLRDQFIFGLN
FT                 SEAAQRALFKEKDNISLKDTVAIAQAQETSELSTAIIRGNQSTQPSEQVNK
FT                 TSRFRSPKKSQQQQQKSGGSDQQWKGKQSGGKHQNKQHYKNSECPNCGSYK
FT                 HFTARECPHKDVVCHNCQKRGHFARKCRSTQKNAHAVDVDDSDVSDINTIV
FT                 KEVRNQKKKYSITVNVKIGGVQHVMELDTACDQSFLSHDFWKNQLNSPPLL
FT                 ACKSVFRTYTGDLFRAPGKLKTTIQYNGQSVEHSIPVSPGKGSSLFGKDLL
FT                 KKIKIDWSAVAQQCNKVSHSAPSLTSLLNEFEDVFEAPDSSTRIRNFKARI
FT                 VLKDDAVPKFLKARPLPYAVRQKVDKELDEMERTGVIVKIDHSEWASPLVV
FT                 VPKANGKVRITGDFKATVNSQLHVTQYPLAIPEELFHTVSKGEKFSKLDGT
FT                 NAYHQMEVYEECQKFLVINTHKGLYRYTVLPQGIASSPAIFQEFVDQMLRD
FT                 IPSTGSFIDDVISTGINDDDHLSILRKILTKMRESNYKLSKDKCEFLQPTL
FT                 EYLGHRVSKEGISTSPKKVADIMSIPAPKDVHEVHSFLGFVNFYFRFIPRL
FT                 ADTAEPLYKLTRSGVKWSWSKSCQQAFQEIKEKLSSSPVLAHFNPSLPIGI
FT                 SCDSSSYGLGIVLYHKYPDGTERPIAYSSKILNDTERRYSQVEKEGYAIIY
FT                 GIKKYYKYLCGRKFILITDNKPLLTIFGPKMKLPPYVATRLHHWSLFLSQF
FT                 QYDVQYRKSEHHGNADALSRLPQNKDSASRTIEQQVNHIINEQLETIPVTS
FT                 KQIQKATAKDAVLVQVLQLMSSGWPAHLAPEAAALQPYFTRRNELSVVSGL
FT                 LMWGMRVVIPEKLRNQILQQLHESHLGIVKMKALARTYVYWPNIDLEIEAT
FT                 AKSCQQCQVLQPDPASAPLHPWEFPEKPMQRLHMDLAGPLHGKMWLVIVDA
FT                 HSKWPEVFPMGNNTTSEAVIKKLLNVVTRFGIPHQIVTDNGRQFVSSEFDK
FT                 FCSTNGIKHVCTSPYHPRSNGEAERFVKTFKEGMKSVSSNVDLHLSRFLFT
FT                 YRTTPHSTTGQSPAELLQGRKLRTQLDLLRPDLKSHVESMQEKQKQQYNNN
FT                 TKMRILIPHQAVWVRTFSKNEEQWTKGEVLRALGPVSYLVNINGKTIKRHL
FT                 DHIREAMPDAPADPPPPPAAASSSSTNKQQQPPEPARRNPSRRARHQDHYQ
FT                 K"
XX
SQ   Sequence 4498 BP; 1301 A; 1235 C; 962 G; 997 T; 3 other;
     actggcgacg agtgtgtatc aagccgcccc agtgaagttc tctgagtgat tttttcttct        60
     tgatgagcgc cagtgacagt gaatcctcgg attactgcct caataagctc tttgagacac       120
     caaagaagaa gaagaaaaag aagaaagttc ctccaccacc tacaaaagtg aagagtgcga       180
     cggatccgcc tgcagagccg actcctccat cttcaaccac agaaaaaaaa gtgaagaaaa       240
     atccgcctcc amacgagccg atttcttcaa ctagtacacc accacctcca gaaaagcctg       300
     ttccaccaca gccaccacct aaaccaaaga agaaaaagmm tgttgttgtt cttcctgtta       360
     gtgatattga gatgattggc aatctcaaga cgttcgattc gtcagtggac gatttcgaaa       420
     tgtggattgg ggcttttagg gcattcctga aagcaaacaa attgaaagac gacgccactg       480
     atgctgatca atgtatgggg attttcgtgt cctccctggg actccccacc tacacgctac       540
     tggtcaatct cctcgctcca gatgacccct caacgaaaaa gctgtctgac ctcatcaccg       600
     ccctcaagga tcactttaag cctgcgccaa aagcgatcgc tgaacgctac cgttttacgg       660
     gtcgacgtca acagcagggt gagtcagtgg cagttttcct ctccgaattg aggaaactcg       720
     ccctcaactg tcagtttgcg gacttggaga cccgcctccg cgaccagttt atttttgggc       780
     tcaacagcga agcagcccag cgtgcacttt ttaaagagaa agacaatatc tctttaaaag       840
     ataccgtagc catcgcccaa gctcaggaga cttctgagct cagcaccgcc atcatacgtg       900
     gtaaccagtc cacccagccc tccgaacaag tcaacaagac ttccagattc aggtctccca       960
     agaaatcaca acaacaacag caaaaatccg gtggcagtga tcagcagtgg aaaggaaagc      1020
     agtcaggtgg taagcaccaa aacaaacagc attataaaaa tagtgagtgt ccaaactgtg      1080
     gctcctacaa gcatttcact gcccgtgaat gcccacacaa ggacgtcgtt tgccacaact      1140
     gccagaaaag aggacatttt gctcgtaaat gtcgctctac gcagaagaac gcccatgccg      1200
     ttgatgttga cgacagcgac gtctccgaca tcaacaccat cgtgaaggag gtcagaaacc      1260
     agaagaagaa gtacagcatc accgtaaacg tgaagattgg aggagttcag cacgtcatgg      1320
     aactcgacac agcctgtgat cagagtttcc tcagtcatga tttttggaaa aatcagctca      1380
     actctcctcc tctgctcgcc tgcaagagtg tatttagaac atacactggc gacttgttcc      1440
     gtgctcctgg aaagttgaag acgacgatcc agtacaacgg ccagtccgtt gagcacagca      1500
     ttcctgtttc tcccggaaaa ggatcgtctc tctttggcaa ggatctgcta aagaagatta      1560
     aaattgactg gtcggctgta gctcagcagt gcaacaaagt ttctcacagt gccccatcac      1620
     taacttcact gctaaatgag tttgaagatg tgtttgaagc tcccgactcc agcacccgca      1680
     tccgcaactt caaagcacgg atagttttga aggacgacgc tgttcccaag ttcctgaaag      1740
     cacgcccact cccgtacgca gtcaggcaga aagtggacaa ggaacttgac gaaatggaga      1800
     gaacaggcgt tattgtgaaa attgaccatt ccgagtgggc gtcacccctg gttgtcgtcc      1860
     cgaaagcaaa cggcaaagtg cgcatcactg gtgactttaa agccaccgtt aacagccagc      1920
     tccacgtcac ccagtatccg cttgccattc cagaagaact gttccacaca gtcagcaagg      1980
     gtgaaaagtt ttccaaactc gacggcacca acgcctacca ccaaatggaa gtgtacgagg      2040
     aatgtcagaa attcctcgtc atcaacacac acaagggatt gtacaggtac acagtcctgc      2100
     cccaggggat cgcatcatca ccagccatct tccaagaatt tgtggaccag atgctccgtg      2160
     atatccccag caccggatcg ttcatcgatg acgtcatttc aactggaatc aatgacgatg      2220
     accatctctc cattttgcgc aagattttaa ccaaaatgag agaatccaac tataaactta      2280
     gtaaggataa gtgcgagttc ctgcagccca ctctcgagta ccttggtcat cgcgtctcaa      2340
     aggaaggtat ctctacctca ccgaagaaag tagctgacat catgtccatc ccagcaccaa      2400
     aagatgtcca cgaagttcac tcgtttctgg gattcgtcaa cttttacttt agatttatcc      2460
     cgaggctcgc cgacacagca gagcccctgt acaagcttac cagaagcggg gtaaaatggt      2520
     catggtccaa atcctgtcag caagccttcc aagaaatcaa agagaagtta tccagcagtc      2580
     cagtcctggc tcacttcaat ccaagcctcc cgataggcat ttcgtgcgac agttccagtt      2640
     acggcttagg tattgtgctc taccacaaat accccgacgg caccgaacgc cccatcgcct      2700
     attcctccaa gatcctgaac gacaccgagc gtcgctacag tcaggtggag aaagaaggtt      2760
     acgccataat ttacggcatc aagaagtact ataagtactt gtgtggaaga aagtttatcc      2820
     tcatcacaga caacaaaccg ttactgacca ttttcggtcc taaaatgaag ttgcctccat      2880
     acgtcgcaac tcgcttacac cactggagcc tgttcctgag tcagttccag tacgacgtac      2940
     agtaccggaa gtcggagcat catggaaacg ctgatgctct cagccgcctt ccacaaaaca      3000
     aggattcagc atccagaaca attgagcagc aagtcaacca tataataaac gagcagttgg      3060
     agaccatccc cgttacctcc aagcagatac agaaagcgac agcaaaagac gccgtccttg      3120
     tccaggtcct ccagctgatg tcgtcaggtt ggccagccca tttagcacca gaagcagcag      3180
     ctttacagcc atatttcact cgccggaacg agttgtcagt agtaagtgga ctactgatgt      3240
     ggggaatgcg tgtcgtcatc cctgaaaaat tgagaaacca gatcctgcag cagctccatg      3300
     aatcccacct ggggatagtt aagatgaagg ccctagcacg cacgtacgtc tactggccta      3360
     atattgattt ggagattgaa gccactgcca aatcatgcca acagtgtcaa gtcctccaac      3420
     ctgatccagc atcggccccg cttcatcctt gggagtttcc agagaagcct atgcagcgcc      3480
     tccacatgga tcttgccggc ccattacacg ggaaaatgtg gctcgtcatc gttgacgccc      3540
     acagcaaatg gccagaagtg tttcccatgg gcaacaacac aacgtccgaa gcggttatca      3600
     agaagctcct gaacgttgtc acccgtttcg gcatccctca ccaaatcgtc actgacaacg      3660
     gtcgtcaatt tgtcagctcg gagtttgaca aattctgcag cacaaacggc atcaagcacg      3720
     tgtgtacgtc tccgtaccac ccccgaagca acggcgaagc ggaacgcttc gttaaaacat      3780
     ttaaggaggg aatgaagagt gtgtcctcca acgttgacct tcacttgtcc cgtttcctct      3840
     tcacctaccg taccactcca cactccacca ctggacagtc accagctgag ttgctccaag      3900
     gccggaaatt gcgtacccaa cttgacctgc ttcgccccga cctaaaaagc catgttgaaa      3960
     gcatgcaaga aaagcagaag cagcagtaca acaacaacac caaaatgcgg atcctcattc      4020
     cacatcaagc cgtttgggtc cgcacattct ccaaaaatga agaacagtgg acaaaaggtg      4080
     aagtcctccg agccctgggt cctgtgtcct acctggtcaa catcaatggc aaaacaataa      4140
     aacgccacct tgaccacatt cgcgaagcca tgcctgacgc tcctgccgat ccgccacctc      4200
     cacccgcagc agcttcatcc agctcaacaa acaagcagca gcagccgcct gaaccagctc      4260
     gccgaaaccc aagccgcaga gcccgccacc aggaccatta tcaaaaataa aattatcctg      4320
     tctcattaaa aatattagtt taaattgtat tagtcgatat aattttccat gtctgaaata      4380
     ttaatttact ttgtcgtgtc tctcctgttt agaatttggt ttcaagtcat gttagtttaa      4440
     agtttaattc atgttgtaaa atgtacgaac aaaattatct taattgagag gaggatag        4498
//
ID   Gypsy-18_SiCu-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-288
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5095-5095 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 288 BP; 75 A; 69 C; 42 G; 96 T; 6 other;
     tgtagaatat ttgcatattc aaacgtcgtt aaggatggct tatctccatt ccttaattgt        60
     tcatgtagac ggtcttggcg acagtctcat atctccactc tcactaatct aactagtatc       120
     tcctgtcgag tcctctttct tcctcagacc tawtctgact ttsmggctga wcagagctmt       180
     ctgttawttg gtaaagaatc ctacgctaaa taaaacccta cttcttacta ttatgaattg       240
     acgactgcac gtacgcatcc tcatttctca taaagctaag atactaca                    288
//
ID   Gypsy-18_SiOr-I repbase;    DNA;    INV; 4465 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4465
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 354-354 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..4222
FT                 /product="Gypsy-18_SiOr-I_1p"
FT                 /translation="MKAILLNTCDEEAYKLIFDLVSPEKPEQRTFGQLIKV
FT                 FDEYFKPQQSAFALRYKFYAARKEYGETATQWAGRLRSLAVGCEFGAELGV
FT                 CLRDRFIFGFEKGPILDRLMEENIATSFEGIVKIASAKMAAREVQESMVKQ
FT                 EPVNFLRNKKGDAGARGARNPDVGGNFGTTRQQWNPHQQKRQSHSREAAMM
FT                 TAIKCDVCGKGNHQKDKCFYKSLNCSKCKKKGHLAAVCRQKFSNRYHNFIE
FT                 EKSSVNNQNNDDICLFTLRQRDIFRSEPFKVNIVLENKNVQCQIDTGSGIS
FT                 CFSEEFYLNNFKIYPLQGSNKTFIFYNGQQVKPLGELYLEISYKGKKENLT
FT                 FYIMKNGGPPILGRDFLNLYNFSLNVFNINNATQHLHDEFPDVFSPGLGCF
FT                 NKAKEKIYLKNTEIKPKFLKARPVPFAIKNKVEKEIERLVFLGILSPVEYS
FT                 AWATPIVPVFKKNGDIRICGDFKVTVNPIIEVDQHPLPRIEDLFSKLQGGK
FT                 EFSKLDLSQAFQQIAIDDESKELLTISTHLGLFRFNRLTFGISCASAKFQK
FT                 IMDSLLSALSGVVIFQDDILVTGVDKKSHLENLRNVVKVLQNAGLKVNFEK
FT                 CNFFQKSIEYLGFIIDEEGLHPSKEKISAIDNAMPPKNVKELQSFLGTINY
FT                 YGRFIKNMSTLLHPLYNLLKQNVKWEWSLREEQTFKKIKELLKSAEVLVHF
FT                 NPELELRLSVDASPVGIGAVLSHILPSGDEKPVAFSSRSLSETEKRYSQIE
FT                 KEGLAIIFGVLKFNQYLYLKKFKLVTDHKPLLTIFGEHKSIPQFTANRLRR
FT                 WAVILSGYNYEIAYVKSNKNNADWLSRMPSSKDSDLFNDDNIDIDYCYFLS
FT                 KNTDFYLNFEILQKETASDKILKKVIYFIKKGWPKKVNDISLKAYFAKRFE
FT                 FDVIQNCIIWNHRIVIPSSMRQQVLQELHKSHMGAVKMKSLARGYVWFPNL
FT                 DVEIENLTKKCDACVLHSNNAPKSQISPWPWPKAPWERIHIDFFDFRRKNY
FT                 LVILDAYSKWLEVFEMSSITSTLTIQALRRVFATFGLPITLVSDNGRQLVS
FT                 DEFENFLAKNNIKHVTSPPYSPASNGAAENAVKTVKSALKKALVSNSENTN
FT                 VVLCRFLLDYRVTPHCTTGVSPATLMLGRNLRTRLSTLLPTDNTLVFKENI
FT                 DRNVLSKRVEHAQSNQIKNSKPNKEVNFDVNETVLVKNYKYVDKPTFIKGV
FT                 ITKKLGIRTYLVKIPELEKLWKRHTNQLKKYTLHFNESKIPTQINSSVCTN
FT                 QPNLEISPKFNVQSVNIDNGVNNNRVELENKLSEEQPECSSINNDSNNLKK
FT                 NEIVFPENKRPRRIIKPVIRFGSEQNS"
XX
SQ   Sequence 4465 BP; 1625 A; 624 C; 869 G; 1346 T; 1 other;
     attggcgacg aggattaaaa actattctat tctgtgttga aaacgaatat agatccgcgc        60
     gttaagaagt gaacagtaaa atggcggaaa tcgggcatct cagggaattt tcaccgataa       120
     gtagtgactg gtctatcttc aaggcccgtt tgttaaacta tttcgctgca aacggaataa       180
     aaaagaagag aaagatgaag acagaatgaa ggcgatatta ttaaatacat gtgatgaaga       240
     ggcatacaaa ttaatattcg atttggtaag tcctgagaaa ccggaacaaa ggacatttgg       300
     ccagttgatc aaggtgttcg acgaatattt taaaccgcag cagtccgcat tcgctttaag       360
     atacaaattt tatgcagcaa ggaaggaata tggagagacg gcaactcagt gggcaggcag       420
     attgcgaagt ctggctgtag gatgcgagtt cggagccgag ctgggagttt gcctaagaga       480
     tcgattcata tttgggttcg aaaagggacc aattttggac cgtctmatgg aggaaaatat       540
     cgctacgtct tttgaaggga tagtgaaaat tgcatcagca aagatggcgg ccagagaggt       600
     gcaagaatcg atggtaaaac aggagcccgt gaatttccta cgcaacaaga aaggcgacgc       660
     aggtgcaaga ggcgcgcgca acccggatgt aggaggcaac tttggaacca caagacagca       720
     gtggaacccc caccaacaga aacgtcaaag tcacagcagg gaggcagcca tgatgacagc       780
     cataaaatgt gacgtctgcg gaaaaggcaa tcaccaaaaa gataagtgtt tttataaatc       840
     tttaaattgt tccaaatgta aaaagaaagg tcatttagcc gcagtatgca ggcaaaaatt       900
     tagtaatagg tatcataatt ttattgaaga aaaatcctcg gtaaataatc aaaacaatga       960
     tgatatttgt ttgtttacat taagacagcg agatattttt agatcagaac catttaaagt      1020
     taatattgta ctggaaaata aaaacgttca atgtcaaata gatacgggca gcggaatttc      1080
     atgtttttct gaggaatttt atttaaataa ttttaaaatt tatcctcttc aaggatcaaa      1140
     caaaacattt attttttata atgggcaaca agtgaagcca ttgggtgaac tttatttaga      1200
     aataagttac aaagggaaaa aagaaaattt aactttttac attatgaaaa atggaggacc      1260
     tccgatatta gggcgtgatt ttttaaattt atacaatttt agtttgaatg tctttaacat      1320
     aaataatgct actcagcatt tgcatgatga atttcctgat gttttttctc ctggattggg      1380
     ctgttttaac aaggccaaag agaaaattta tttaaaaaat actgaaatta aaccaaaatt      1440
     cttaaaggct cgcccagtcc catttgctat taaaaataaa gtagaaaaag aaattgaacg      1500
     attggtattt ttaggtatat tgtctccagt ggagtacagc gcatgggcaa ccccaattgt      1560
     gccagttttt aagaaaaatg gagacataag aatatgtgga gacttcaaag taacagtcaa      1620
     ccctataata gaagtggacc agcacccact accgagaatt gaggatcttt ttagcaagct      1680
     tcagggagga aaggagttct cgaaacttga tttgtcacaa gcctttcagc agatagccat      1740
     tgatgatgag agtaaggagt tattaacaat atctacacat ttaggcctct ttagatttaa      1800
     tcgtttaacg tttggcatat catgtgcatc agctaaattc caaaaaataa tggattctct      1860
     attaagtgca ttgtcagggg tggttatttt tcaagatgat attttggtca ctggggttga      1920
     taaaaaaagt catttagaaa atttaagaaa tgttgttaaa gttttgcaaa atgcagggtt      1980
     aaaggttaat tttgaaaagt gtaatttttt tcaaaaaagc attgaatatt tagggtttat      2040
     tatagacgaa gagggtttac acccttcaaa agaaaaaata tcagctatcg ataatgctat      2100
     gccaccaaaa aatgttaagg agttacagtc gtttctaggt actataaact attatggtcg      2160
     atttataaaa aatatgtcca cattgctaca tcccctttac aatcttctca aacaaaatgt      2220
     taaatgggaa tggtctttga gagaagagca aacttttaaa aaaataaaag agcttctgaa      2280
     atctgctgaa gttttagtcc acttcaatcc tgaattggag ctaaggctat cggttgatgc      2340
     ctcacccgtg ggcatagggg ctgtattaag tcatattttg ccttccggtg acgaaaaacc      2400
     cgtagctttt tcttcaaggt cgttatcgga gaccgaaaaa aggtactcac agattgaaaa      2460
     ggaaggacta gcaataattt ttggcgtctt aaagtttaat cagtatttat atttgaagaa      2520
     atttaaactt gtaacagatc acaagccttt attaacaatt tttggtgagc acaagagcat      2580
     accgcaattt acggcaaata ggctaaggcg gtgggcagta atattatcag ggtacaatta      2640
     tgaaattgca tacgtaaaaa gcaacaaaaa taatgcagac tggttatccc gtatgccatc      2700
     aagtaaagat agtgatttat ttaatgatga caatattgat atagactact gttatttttt      2760
     atcaaaaaat acagattttt atttaaattt tgaaatttta caaaaggaaa cagcctctga      2820
     caaaattctt aaaaaagtca tttattttat taaaaaagga tggcctaaaa aagtgaatga      2880
     tatttcgtta aaggcatatt ttgctaaaag atttgaattt gatgtaattc agaattgtat      2940
     aatatggaat catagaattg ttattccaag ttctatgcgg cagcaagtat tacaagagtt      3000
     acataaatca catatgggag ctgttaagat gaaaagttta gctagagggt atgtttggtt      3060
     tccaaattta gatgttgaaa ttgaaaattt aacaaaaaaa tgtgacgcat gtgttttgca      3120
     ttcaaataat gctccaaagt cgcaaatatc tccatggcct tggccaaaag caccttggga      3180
     gcgcattcat atagattttt ttgattttag aagaaaaaat tatcttgtaa tacttgacgc      3240
     ttattcaaaa tggctggaag ttttcgaaat gtctagtatt acttctacat taactataca      3300
     agctcttaga agagtttttg ctacttttgg tttgccaatt actttagttt cagacaatgg      3360
     cagacagcta gtatcagatg aattcgaaaa ctttttggca aaaaataaca tcaaacatgt      3420
     aacgagtccc ccttactccc cagcatctaa tggagcagca gagaatgctg ttaaaactgt      3480
     aaagtcagct cttaaaaagg ctttagtctc aaactcggaa aatactaatg tagtgttatg      3540
     caggttcctc ttagattata gggtcactcc acattgtaca actggggtga gtcctgcgac      3600
     tttaatgtta ggtagaaatt taaggacgag gttatctact cttttaccca ctgataatac      3660
     attggttttt aaagagaaca tagatagaaa tgtattaagt aaaagggtag aacatgctca      3720
     aagtaatcaa ataaaaaata gtaagccaaa taaagaagta aattttgatg taaatgaaac      3780
     tgtgttagtc aagaattata aatatgtcga caaaccaact tttattaaag gagttataac      3840
     aaaaaaattg ggaattagga cttatttggt aaaaatacca gaattggaaa aactttggaa      3900
     gaggcacact aatcaattaa aaaaatatac tctacatttt aatgaatcta aaattccaac      3960
     tcaaataaat tctagtgttt gtaccaatca gcctaattta gaaattagtc caaaatttaa      4020
     tgtacaaagt gtaaatatag ataatggtgt taataataat agggtagaat tagaaaacaa      4080
     gttaagtgag gaacaaccag agtgttcatc aattaataat gacagtaata atttaaagaa      4140
     aaatgaaatt gtttttcccg aaaataaaag accaagaagg attataaaac ctgttattag      4200
     atttggatct gagcagaata gttagagcat ttgtaatttt aggaaatgtt aaaatttggt      4260
     ttaaatgtag ttaatttttt taatgccaaa ggagttatta ttgtttattg gattaggtta      4320
     tatagatatt aagttgttag ttgtataata cttgattcaa acgccactaa gtttaaacag      4380
     ttattgctta agtttaaata caaattgatt aaaagagagt agatatattt tttttgtaaa      4440
     aaaaaaattt ttaagaggag ggtat                                            4465
//
ID   Gypsy-18_SiOr-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-228
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 387-387 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 228 BP; 76 A; 40 C; 38 G; 74 T; 0 other;
     tgtagtattg ttataaaaat aatatttaaa tattccgcct ttaccatatg taaaataata        60
     tatagtacac catccgtttc cggtagatgt atgcgcaggc ataaggtact gatggtacga       120
     cattgtaaat tcattctttc tctgagcgtt gaaataaaag tatcaaattt caaactgtgt       180
     tttactcagc ctcagtaaag ttggaatcac gtggtccaag acaccaca                    228
//
ID   Gypsy-18_SpEx-I repbase;    DNA;    INV; 5464 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5464
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4087-4087 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           259..1839
FT                 /product="Gypsy-18_SpEx-I_1p"
FT                 /translation="MPRRRKSLYTDANESVHEDSEPEQSSNITMPQDVLAK
FT                 LLTSIQQSQAEFCQQLLREVRSSTPLLSSADASTSIATANAAAAIMKSTAN
FT                 FSKCTSKFSGSPEESVDNFIDAIEVYKSCLNISDENALLGMSMLLTSSAGT
FT                 WWQGVKGTTKTWEEAITRLRSAYGERRPPFRIYIELFSQIQGTENTDLFIS
FT                 KVRALFAKLPQGDLCERVELDMAYGLLDRRIRKRVDRATVTTFEELLKKAR
FT                 AVEDSLNESQNGRPCLKPSSHSEDGSNVAASAEPARVRTYTSSTASRSSAV
FT                 VASGRMGDSATEKTGTTKLFCVYCKRSGHTKETCEKLVKNSDQNKSKSDFK
FT                 KDIKCYGCGAANIIKSKCPKCNANNVKNNGHSAFYSLTSARDSRAPTDCFR
FT                 SHRTPRVRSDIRSGSDGSAPRPHHAPTPLPRSSVMFGGTAGAPTCPSVERH
FT                 ASSLHSVRGNPAAVRGAGICVTNSRTDCNSFNENSFCCIDNRNRSVLRKNC
FT                 IRLCTKTNVCVCTKNVKCVCTKNVNVFVLRI"
FT   CDS           1788..5462
FT                 /product="Gypsy-18_SpEx-I_2p"
FT                 /translation="ECKMCLYQECKCVCTKNLKCVYTACDQGEAALPLYSS
FT                 VSTSRSVSFNGCQSHPGIPDGSKSCARDFMPVTCDYKPFDNNISDSQHFSQ
FT                 IASGSQPFSENVSASQHFLSKNDNCQRLCGIASGGQPLNGNRDFRSFLRPV
FT                 LNISILGENGTALLDSAAKSCVAGHTLYALLKAKGHPMSSGMENVKLADGV
FT                 LRLMNVLTTEVNVTLEGRTRLVRFLIFPESDDNESLLGIDFLINFNICVDF
FT                 GNFKWHFFDSVEQFDLPFEKVLHQADSVPVSSLLRDEEASRLSDAQREVLA
FT                 QFLSENKDVFELRGEPTAFAEHAIDTGDHAPVAVPPYRLTPAKKAIMQSEI
FT                 EKMLADDIIEECESAWGSPALLVPKKNGQVRFCVDYRKLNAITKTDVYPMP
FT                 LIDELVQSTKRNCIMSTLDMRSGFWNVSVRECDRDKTAFLTPFGTYRFKRM
FT                 PFGLKNAPSTFQRLIDRLRSGASLKDVTLLCYQDDLLVISEGFDQHIADLR
FT                 AVFERLRTFNLRANREKCVFAREEVKYLGHVITQDGVLPDHDKVRAVADMK
FT                 APSNVRHLRTFLQTCSWFRKFISNFSDVAEPLTRLLKKNQTWVWGAEQDQA
FT                 FQELKNRLTSAPILIQADYSKPFVLRTDASNYALGAVLLQGEGKDERPIEY
FT                 ASRLLNPAERNYTTTEREALAVVWSVERFRGYLEGQQIIVGSDHQPLKWLL
FT                 SLKSPSGRLVRWALKLQEFNIQYEYTPGRANVVADTLSRPTCKESSKDQCG
FT                 ICSVVVDLPSRSPAVLRPAQLDDPELEKIITGLESNDAVEEKRWSERGYFM
FT                 QQGVLYRYNPDVDSEEPQLVLPVSLRLEVVKECHDTPIAGHQGIDRTLHKL
FT                 SQTFFFPGMRRFVADFVKSCATCQRYKSSNVKPSGLLQTPVLNQRGEVLAI
FT                 DLFGPLPSGEKGEKYILLVEDTATRWVELFALVDATSEVCARTLIEEYFLR
FT                 YGLPRRIISDNGVQFVSSVMQQCMYILNIDQDLLPLYHPEANPAERKNRDL
FT                 KVQLAQLVDTEHSSWPNHLPSVRFAMNSALCQTTGVSPAFLTLARELRSPV
FT                 DVHYDIRAVLKKDNFVPQITPYLKRFLDSLVSIRDKVEKEQDRRKDYADKG
FT                 RKPAEFDVGDQVLLKSHVLSNAAKGVSAKFVPKRDGPYKVVKKASPTTYVL
FT                 SEIDSPDEILGRFHASQLTQFVNRDDSPPLPIMPKRSRGRPRHVKPVSADQ
FT                 ERVPARGRQHEPEGE"
XX
SQ   Sequence 5464 BP; 1430 A; 1169 C; 1343 G; 1522 T; 0 other;
     tcctggcgct ccaacgtgtg tttagtataa aacaaggggt caaagtgtta ttgttcgcgg        60
     atcaaacttt tttcgttcgt tgcaagttcg ttcatgtcga aaagttaggt ataaaacgac       120
     cgacaagtgc taaaaactgt gtatggacag tgactttgct attgttttgt gtctacgagt       180
     ggtttttgct ggttggtaca accacgagcc gtacttttgt tacttttgtc gaaaagtagg       240
     tacttattgg tttgcaaaat gccgcgaaga cgcaagtcgt tatataccga cgccaacgag       300
     tctgtacacg aggactccga accggaacag tcaagcaaca taacgatgcc acaagacgtc       360
     cttgccaagc tgctgacatc aatccaacaa tcgcaagcag agttttgtca acaactttta       420
     cgcgaagttc gttcgtcgac gccattgctt tcgtcagccg acgcaagtac atccatcgcc       480
     accgccaacg ccgctgcggc tattatgaag tccacggcaa atttttcgaa atgcacttca       540
     aagtttagtg gcagtccgga ggaatccgtt gacaacttta tagatgcaat cgaggtttac       600
     aagtcatgcc taaacataag cgacgagaac gctctcttag gtatgtcgat gctgctcact       660
     tcatcggcgg gaacatggtg gcaaggtgtt aagggcacga caaaaacgtg ggaagaagcc       720
     atcacgcgat tacggagtgc gtatggcgag cgtcgcccac catttcgcat ttatatcgaa       780
     ctgttttcac agatacaagg cactgaaaac acggatttgt ttatatcaaa agttcgtgcc       840
     ttgttcgcga agttaccaca aggagattta tgcgaacgcg tcgagttgga catggcttac       900
     ggattattgg atcgtcgtat caggaagcgc gtcgacagag ctacggttac aacgttcgag       960
     gaattgttga aaaaggcacg cgccgtagaa gactccttaa atgagtcaca aaacggtcgc      1020
     ccttgtctta agccgtcgtc tcatagtgaa gatgggtcaa acgtcgccgc ctcggccgag      1080
     ccagcgcgag ttcgtaccta cacgtcgagt actgcttccc ggtcgtccgc tgttgtcgct      1140
     tctggtcgca tgggcgattc agcgacagaa aagacaggga ccaccaagtt attctgtgtt      1200
     tactgcaaac gtagcggtca cacaaaggaa acgtgcgaga aattagtgaa gaatagtgac      1260
     caaaataaat ctaaaagtga ttttaaaaaa gacattaagt gttacggttg tggtgccgcg      1320
     aatataatta agtctaagtg tccgaagtgt aatgccaata atgtgaaaaa caatggacat      1380
     tcggcatttt attcgcttac ttctgcacgt gattctcgtg cacccaccga ttgcttcagg      1440
     tcgcaccgta cgccgcgcgt acgtagcgac atacgctccg gctccgacgg cagcgcgccg      1500
     cgaccgcacc atgcgcctac cccgctaccg cgaagtagcg tgatgtttgg cggtacagcg      1560
     ggcgcgccta cgtgtccgag cgtcgagcga cacgcgtcgt cgctgcacag tgttcgaggt      1620
     aaccccgcag ccgtgcgagg cgcagggatt tgtgtcacta attctcgtac tgattgtaat      1680
     agttttaatg aaaattcttt ttgttgtatt gataatcgaa atcgttctgt attacgtaaa      1740
     aattgtattc gtctttgtac taaaactaat gtgtgtgttt gtactaagaa tgtaaaatgt      1800
     gtttgtacca agaatgtaaa tgtgtttgta ctaagaattt aaaatgtgtt tatactgctt      1860
     gcgaccaggg ggaggccgcg ttaccgttgt attctagtgt tagtacgtca cggtcggtat      1920
     cgtttaatgg ttgtcaatcg catcctggta ttcccgacgg ttcaaagtct tgcgctcgcg      1980
     actttatgcc tgttacctgt gattataaac catttgataa caatatcagc gactctcaac      2040
     atttttcaca aatcgcaagc ggtagtcaac ctttttctga gaatgtcagt gcttctcaac      2100
     attttctttc aaagaacgat aattgtcaac gtttgtgcgg aattgccagt ggtggacaac      2160
     cattgaatgg taatcgcgat tttcgatcct ttttaaggcc cgtgctaaat atcagtattt      2220
     taggggagaa tggtaccgcg ttattagatt cggcagctaa aagctgtgtc gctggtcata      2280
     cgctatacgc tctcctaaag gccaaaggtc atcctatgtc ctccggtatg gaaaatgtaa      2340
     aactagcgga tggtgtactt aggttaatga atgtactaac taccgaagta aatgttactc      2400
     ttgaaggtag aaccaggctc gttcgttttt taatttttcc ggagtctgat gataatgaat      2460
     cgcttctagg tattgatttt ttgataaatt ttaacatctg tgttgatttt ggtaatttta      2520
     agtggcattt ctttgacagt gtagagcagt ttgatcttcc atttgaaaaa gttttacatc      2580
     aggctgatag tgtgcctgtt agtagtttac ttagggatga agaagcatcg cggcttagcg      2640
     acgcgcagcg tgaggttctc gcccagttcc tttctgaaaa taaggacgtt tttgagttac      2700
     ggggtgaacc aacagctttt gccgagcatg ccattgacac tggtgatcac gctcctgtcg      2760
     cagtccctcc gtatcggctt actcctgcta agaaagcgat catgcagtca gagatcgaaa      2820
     agatgctggc tgatgatata attgaggagt gcgaatcagc atgggggtcg ccagcactgt      2880
     tagtgcccaa aaagaacggt caggttcgtt tttgcgtaga ttacagaaaa cttaacgcaa      2940
     ttacaaagac tgatgtgtat ccaatgccgc ttatagacga gctcgtgcag tctacgaagc      3000
     gaaattgtat catgagtacg ttagatatgc gtagtgggtt ttggaatgtt tcggttaggg      3060
     aatgcgatcg agataaaaca gcatttttga ctccgtttgg tacataccgt ttcaaaagga      3120
     tgccttttgg gctcaaaaac gctccgtcaa cgttccaacg acttatagat aggttgcgtt      3180
     ctggcgcctc tctaaaggat gtgaccctgt tatgctacca agatgacctc ctggttatat      3240
     cagaaggatt cgatcagcat atcgccgatt tacgtgctgt ttttgagagg ttgcgtacgt      3300
     tcaatcttcg cgccaatcgc gaaaagtgtg tcttcgcgcg cgaagaagtg aaatacttgg      3360
     gtcatgtcat aactcaggat ggtgttctgc ctgatcatga caaagttcgc gcagtggcgg      3420
     acatgaaggc accaagtaat gtacgtcacc ttaggacttt ccttcagacc tgctcgtggt      3480
     tcagaaagtt catttcgaac ttttcagacg tcgctgaacc tttaactcgt cttttgaaga      3540
     aaaatcagac ttgggtatgg ggcgctgagc aagatcaggc gtttcaggag cttaagaatc      3600
     gcttaacgtc tgcgcccata ctcattcagg ctgattatag caaacctttt gtcttgcgaa      3660
     cagatgcaag caattacgct cttggtgcag tactgctgca aggtgagggt aaggacgaaa      3720
     ggccaataga atacgccagt cgccttttaa acccggccga gcgtaattat acaactacgg      3780
     agagggaagc tcttgcagta gtttggtcag tagagcgttt tagaggttat ttggaaggtc      3840
     aacaaataat tgtgggaagc gatcatcaac ctttgaaatg gctgcttagc ttaaagtctc      3900
     catcaggtcg attagttcgt tgggcgttaa agctacaaga gttcaatatt cagtatgaat      3960
     acactccagg tagagccaat gttgtagctg acacactgag tcgtcctact tgcaaagaaa      4020
     gtagtaaaga tcagtgtggc atttgttcag ttgtcgtcga cttaccatca agaagtccgg      4080
     ctgttttaag gcctgctcag ttagacgacc ctgaacttga aaagattatt accggtcttg      4140
     agagtaatga cgcggttgaa gagaaacgat ggtctgaacg tggttacttc atgcagcaag      4200
     gagttcttta tcgctacaac ccagacgtag actcggagga gccacagctc gtactccctg      4260
     taagtttgcg tctggaggtc gtaaaggaat gtcacgatac tcctattgct gggcatcaag      4320
     gtattgatag gaccttacat aagctttctc agaccttttt ctttcccgga atgagacgtt      4380
     tcgtcgcaga ctttgtaaag tcctgtgcga catgccagcg gtacaagtca tcaaacgtaa      4440
     aaccatcagg ccttctacag actccagttc ttaatcagag aggagaggtc ttggcgatag      4500
     acttgtttgg cccgctccct tctggagaaa agggggagaa gtacattttg ttagttgagg      4560
     acacggctac tcggtgggtc gagctttttg ctctagttga cgccacctca gaagtctgtg      4620
     cacggacgct aattgaggaa tatttcctaa ggtacggcct accgcgccgc attatctcgg      4680
     ataatggggt acaatttgtc tcttccgtaa tgcaacagtg catgtatatt ttaaatattg      4740
     atcaggactt gttaccttta tatcatccgg aggcaaaccc ggcagaacgc aagaacaggg      4800
     atttaaaggt gcagctagct cagttggttg acaccgagca ttcttcgtgg cccaaccact      4860
     taccatcggt tcgttttgcc atgaactccg ccttgtgtca gaccacaggt gtttcaccag      4920
     cttttctcac cttagctagg gaacttcgtt caccagttga tgttcattat gatattaggg      4980
     ccgtccttaa gaaggataac tttgttccac aaataacgcc ctatcttaag agatttttgg      5040
     actctttggt ttctattagg gataaggtag aaaaagaaca ggatagacgt aaagattacg      5100
     cagataaggg tcgtaagcct gcagaatttg atgtcggtga tcaagttttg ttaaagtcgc      5160
     acgtattgag taacgctgct aaaggagtat cggctaagtt tgtaccgaaa agggatggtc      5220
     cttataaggt agttaagaaa gctagcccta cgacttacgt gttatctgaa attgattctc      5280
     ccgacgagat cttgggcagg ttccatgctt cccagcttac gcaatttgtt aatagggacg      5340
     atagcccgcc tctaccaatt atgccgaaac gtagtcgagg ccggcctcgt catgtcaagc      5400
     ctgtttctgc cgatcaggag cgggttcctg cgcgaggacg ccagcatgaa cccgaggggg      5460
     agtg                                                                   5464
//
ID   Gypsy-18_SpEx-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-277
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4147-4147 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 277 BP; 67 A; 65 C; 63 G; 82 T; 0 other;
     tatagcggat aacgtttccg aacgtctcct tagccctggt cgtaagcggt ccaatagggg        60
     caagccgccc gaccgctatt cgccagcgcg atagtatttt aaaatacgcg ccaagtggcg       120
     ttatgttact ggccgctgat tggccgacag attattagaa aagttatggc ggactttaca       180
     gttttgtgcg tgtgtctctt gtaattttta tatagtttta ttaaagttta tgccgcgtaa       240
     caagactttt cactgtaacc gacccacccc gactaca                                277
//
ID   Gypsy-18_SpFr-I repbase;    DNA;    INV; 5338 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5338
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1854-1854 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..4783
FT                 /product="Gypsy-18_SpFr-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MPNNNRKSRSRSGSRELRHYRHDSRARESESHTGRRD
FT                 VRSRHRGSQASSSPRRHTTPNNLLTQQMQQILDRLTTLEEQQRALPQAPCE
FT                 LIAAAVPRATPLPSQPPQRRVRVAETKTGTGEGASRRDSAAPPSPERSVSG
FT                 VIEHDANVADRLINAIRSINTTVRSNQAYFISNFDPSVHDIDTWCEEVDRA
FT                 KVSNGWSDNECLSRIGNCLKGDARTWLNEWVTSDRSWSNFKREFKPMCPRK
FT                 PDVANILYEVMSTNSDRYSTYADYARRTLLRLRIVRGLSDELISAIVIRGI
FT                 TDPQIRASATNAKLMPNQLVEFLSIYVKPKLPNSKRPNTSNNDRFSKPSYD
FT                 ASSRKRRFDDGACFTCGKHGHKSSDCYKRLKPIFNNSKGGENGQKSNPAPS
FT                 TTKLEPCSFCKKPGHRIESCFAKKKAESSNASNVNFCRENVGSRCSDIVVA
FT                 VIQGIPVDVLIDSGSSISLVSSTLLKHFRCTRKPAFRVLRGIGSQEVESTF
FT                 FVTLPIEFDKITLEVDLHAVSPEFLTTPIIVGTDVLNREGVTYVRTRDQQY
FT                 LTYKQGRTDNVMCALSTDDIPIKTSLTGSDLDRMLDLINEFSKFLISGTAA
FT                 TTVNTGSMSIKLNNATPVNYRPYRLSLPEILKVRQIIQELLDKKIIRESES
FT                 EYASPILLVKKKDGSDRMCVDYRKLNEITVKDRFPLPLIDDQIDRLGKHKF
FT                 FTSLDMATGFHQIPMDEEAIPLTGFVTPEGHYEYLKMPYGLANAPVVYQRI
FT                 MSKTLRRQLESGKTLVYIDDVLILSNTVDEGLTYLRDVLQTLADAGFSINL
FT                 KKCSFLSTEIEYLGRTISQGQVRPSELKVKALVEAPNPKTVKQVRQFLGLA
FT                 SYFRRYIPNFAARSTPITKLTKKGALFVWGSEQEEARQEIIAHLTSEPVLA
FT                 IYDPSLPIEVHTDASSIGYGAVLLQVHGNGHKRAVGYFSKRTQGAEPRYHS
FT                 YELETLAVVRALQHYRHYLVGVHFKVVTDCNALKSTQQKKDLLPRVARWWM
FT                 YLQDFDFALEYRKGSSMSHADYLSRNPVNVCEVRKQQNWARIAQAADEETQ
FT                 QLIQKLTDGQLDSNRYVHKNDLLFYKYSPIGEEPRFLCYVPKGHRLSLLRI
FT                 FHDEHDHLGADKTLELIRKHFWFPSLKSFVQKYIGHCLICLTHKKAPRAPR
FT                 QPIHSWEKPCAPFEIVHIDALGPLPQSNGYRYVLIVIDSFSKFCLLYPMFG
FT                 QDAIELKRLVTNVISLFGTPKLIVADRGRMFQSSDFTKFISELGIDLHLIT
FT                 PEMHHSNGQVERYCRTLLNMIRIQCNHRQDEWADMMWRSQLILNITKQKTT
FT                 QLSPLNLLVGIEAATPLIRHLVRDAALDSSHPNREAMREMQRQRASERLAR
FT                 NQQQQDTTVNASRKTPRAFETNSLVFVIKQTQSTGKLDSGMRGPYRVVKAL
FT                 PHDRYELQLLTGSYGKSTQAAAQYMKPWRGEWTPETCAAYFESEYTRMIS"
XX
SQ   Sequence 5338 BP; 1476 A; 1176 C; 1241 G; 1445 T; 0 other;
     tcagaagtgg gatacgacac gtgtccagac ccgctctgac cacagataac tattaacact        60
     tggcagtttg gcacttcaaa tatttttttt aatttttttt tttttttctt cttcttgggt       120
     tagtttcgaa ttggctactt gggtttaaag caaacggctt tgctatacga agtacgtaag       180
     tgattaagtg tgagtgtatc ggtaagttct ggtgagtacg ttccaattta cttattatcc       240
     tgatagtgaa tcatctgctt tacatattgc aatttacatt tcgtatctca gttggctttt       300
     actattacct tgccttactg agttgctatt tgcacgtttt gattaattta ataagttcat       360
     tgcttgtatt gctgacagtg aagcagcgaa tatgcctaat aataatcgta aaagtagaag       420
     ccgttctgga agccgcgaat tgcgccacta ccgtcatgat tctcgtgcga gagaatctga       480
     atctcacaca gggcgccgcg atgtgcgcag ccgacatcgt ggttcgcagg caagcagctc       540
     cccaaggcga catactactc ctaataattt attaacccaa caaatgcaac agatactaga       600
     tcggttgaca acgctcgagg aacaacagcg tgcgttgccg caagcccctt gcgagctgat       660
     tgccgctgct gtaccccgcg caacgccact gccgtcacaa ccaccacagc ggcgcgtgcg       720
     ggtagcggag acgaagactg ggaccggaga aggtgcaagc cgtcgcgact ctgcggctcc       780
     gccttcgccc gaacgttccg tgagtggggt catagagcat gatgccaacg tagctgaccg       840
     actgatcaac gccatacgtt ccatcaatac tacggtgaga tccaaccaag cttattttat       900
     ttctaacttc gatcctagtg tccacgatat agatacctgg tgtgaggagg tagatcgcgc       960
     taaggtctct aatggctgga gcgataatga gtgtctgtct cgtattggga attgccttaa      1020
     aggggacgct aggacctggc ttaatgagtg ggtaactagt gaccgcagct ggagcaattt      1080
     taaacgagaa tttaaaccaa tgtgccctag gaagcccgat gttgcaaata ttttgtacga      1140
     agtaatgagt acaaactcgg ataggtattc aacatatgca gattacgctc gtcggacgct      1200
     actcaggttg cgtatagtca ggggcttgag tgacgaattg atctctgcga tagtaattcg      1260
     aggcattacc gaccctcaaa ttcgcgcttc tgccacaaat gcaaagttaa tgccgaatca      1320
     gttagtagag tttctttcga tctacgtcaa accgaaattg ccaaattcaa agagacccaa      1380
     tacttcgaat aatgatcgat tttcgaaacc tagttacgat gcgagttcgc gtaagcgtag      1440
     attcgatgac ggggcatgtt ttacgtgtgg taagcatggc cataaatcct ctgattgtta      1500
     taaacggttg aagcccattt tcaacaatag taagggtggt gaaaatggtc agaagagtaa      1560
     ccctgctccc agcacaacga aactcgaacc atgtagcttc tgtaaaaaac ctggccacag      1620
     gatcgagagt tgttttgcta aaaagaaggc agaatccagt aacgctagta acgtaaactt      1680
     ctgtcgtgaa aatgtaggta gtagatgcag tgatatagtt gttgcagtca tacagggcat      1740
     acccgttgat gtgctcattg atagcggctc aagtatatcg ctagtttcct ccacattgtt      1800
     aaaacatttt agatgcacac gcaaacctgc ttttagagta ttgagaggta ttggtagtca      1860
     agaggttgag tctacttttt tcgttacttt accaatagag tttgacaaaa ttactctgga      1920
     agtggatttg catgcggtat ccccagaatt tttaaccacc cctatcatag tcggtactga      1980
     tgtgttgaat cgtgaaggag taacctatgt tcgtactcgc gatcaacaat atcttactta      2040
     taaacaggga cgtaccgata atgtcatgtg tgctttatcc acagatgata tccctattaa      2100
     aacatctttg accggttctg acctagatag aatgcttgac ttgatcaacg aattttctaa      2160
     atttcttatt tcgggaacag ctgctactac agtgaatact ggcagcatgt cgatcaaact      2220
     aaataatgca acacctgtca attacaggcc gtatagactt tcgttgccgg aaattttgaa      2280
     ggttcgtcag atcattcaag agcttctcga taagaagatt attcgggaat cagagtctga      2340
     atatgcgagt ccgatacttc tagtgaaaaa gaaggatgga tcggaccgca tgtgcgttga      2400
     ttaccgcaaa ttgaatgaga ttaccgtcaa agaccgcttc cctttgccat tgatcgacga      2460
     tcagatcgac cggttaggga agcataagtt cttcactagc cttgacatgg ccacaggctt      2520
     tcatcagatt ccgatggacg aagaagcaat accgctcacg ggattcgtta caccagaagg      2580
     tcattatgaa tatttaaaga tgccgtatgg tttagcgaac gcacccgtag tttatcagcg      2640
     cattatgtca aaaactcttc gacgtcagtt ggaatctggt aaaacccttg tgtacattga      2700
     tgatgtactg atacttagta atactgtaga cgaaggcctt acttacttgc gtgacgtact      2760
     tcaaacgctt gctgatgctg gattctctat caatttaaag aaatgttcat ttttatcgac      2820
     cgagatcgag tacctaggcc gcaccataag ccaaggtcag gtacggccga gcgaacttaa      2880
     ggttaaagca ctggtagaag cccctaatcc gaaaacggtc aagcaagttc gtcagttctt      2940
     aggtttggcc agttattttc gtcgttatat tcctaatttc gctgctagaa gcaccccgat      3000
     taccaaactt actaaaaagg gtgcattgtt tgtgtgggga agtgaacaag aagaagcacg      3060
     ccaagaaata atcgcacact taactagtga acctgtatta gccatatacg acccaagttt      3120
     acccatcgaa gtccacacag atgcaagctc aattgggtat ggtgcggtgc tccttcaggt      3180
     tcacgggaac ggacacaaac gagccgttgg gtattttagt aagcgaacgc agggcgccga      3240
     acctcgatac cattcctatg agctcgagac tctggcggtg gtcagggcgc tgcagcacta      3300
     cagacactat ctggtcggtg ttcattttaa agtggtaact gactgtaatg ctctgaaatc      3360
     tacccagcag aagaaagact tgctgccacg tgttgccaga tggtggatgt atctgcagga      3420
     ctttgacttc gccctggaat accgtaaggg cagttcaatg tcgcacgcag actatttgag      3480
     tcgaaacccc gttaacgttt gtgaagttcg taaacagcaa aactgggctc gaatagcgca      3540
     ggctgcggac gaggagaccc aacaactcat ccaaaaactg acagacggac agctagattc      3600
     aaaccgctac gtacataaaa acgatctact cttttacaag tactctccaa tcggagagga      3660
     gccaagattc ttgtgttacg tgccgaaagg tcacaggctc agcttactca ggatatttca      3720
     tgacgaacat gatcaccttg gtgctgataa gactttagag ctcattagaa aacatttttg      3780
     gttcccttct ttaaaatcat tcgtgcaaaa gtacataggt cattgtctta tttgtttaac      3840
     gcataaaaag gccccgaggg ctccacgaca accaatacac tcgtgggaga aaccttgtgc      3900
     ccctttcgaa atagttcata tagatgcatt aggccctctg cctcaatcaa atggttatcg      3960
     atatgttctg attgtaatag actccttttc caaattctgt ctattgtacc ctatgtttgg      4020
     acaagacgct atagaattaa aacgactcgt tacaaatgtt atttcgttat ttggtacacc      4080
     gaaattaata gtcgcggaca gaggcaggat gtttcagagt tcagacttca cgaagttcat      4140
     ctcagagttg ggcatcgact tgcatctcat tacaccggag atgcaccatt caaatgggca      4200
     agtggaacgt tactgccgaa cacttttgaa tatgattcgc attcagtgca atcatcgcca      4260
     ggatgaatgg gcagacatga tgtggcgatc gcaacttatt ctcaacataa ctaagcaaaa      4320
     gaccactcag ctatcgccac tgaacttgct cgtaggcatc gaagcagcca cgcctctcat      4380
     aaggcactta gtacgtgatg cggctctgga cagttctcac cctaaccgtg aagcgatgag      4440
     ggagatgcag agacaacggg cgtcggagcg tttggctaga aaccagcagc agcaggacac      4500
     gactgtgaac gctagccgaa aaacacctcg ggcatttgaa actaactcac ttgtctttgt      4560
     aattaagcag acacaatcga ctggcaagct cgactctggc atgcgcgggc cctatcgtgt      4620
     ggtcaaagca cttccccacg accgatatga gctacagctg ttgacgggct cctacggtaa      4680
     atctacacaa gctgcggctc agtacatgaa gccgtggcgc ggggagtgga ctccggagac      4740
     atgcgctgct tactttgaaa gtgagtatac ccgtatgata agctaacgtc gtgcctatgt      4800
     catacaagtg tggattaaac atgatacgct aacgtcgtgc ctatgtcatg tatccgtgtt      4860
     tttttacggt gtggaacaag ctaacgtagt gcctctgttt cgcgataata gagatagcta      4920
     acgtagtgct tcctctctag tgtttgattg aactatgcta acgtagtgcc tatggttcat      4980
     ttgtgaaaca agctaacgta gtgcctctgt ttcgcgataa tagagatagc taacgtagtg      5040
     cttcctctct agtgtttgat tgaactatgc taacgtagtg cctatggttc attgtatacg      5100
     atttaatagc gtgaatcttc agtttttttt ttataattgg attgttattt gcttatgttt      5160
     tcagacgcag atagcaatga tgaggaggta gagttcacgc ctgagcgagc tgccacgcat      5220
     gatgtgcatc ctagaggcga ggggatgacc gagcctgtac ccggcacctc tggagccacg      5280
     gagccgctcc gaatccagga agaggaagac gaggacgtcc tccagtcagg agaggccg        5338
//
ID   Gypsy-18_SpFr-LTR repbase;    DNA;    INV; 329 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-329
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1872-1872 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 329 BP; 76 A; 47 C; 75 G; 131 T; 0 other;
     tgttagagga gtagtgacag atctcgtgat aatggcggga acacgagtgg gcggagcctg        60
     ctgtctatat aagcgcttgc aagcgcagtt cgcgcccttt tctcgtcgag ctcacttggc       120
     aaggggaacc tctgcccgtt tgaatggtcg aactgccttt ttgttgaata ttaatttcgc       180
     gtgtaattaa attttaatgt gatttgtttt gttattaaaa agttggtaat tttgttttag       240
     tttccgttaa gtttgtattt ttgtaacaat taataaataa gtgtggtttg tgtttttttt       300
     tatttagttc catttttgat ttcctaaaa                                         329
//
ID   Gypsy-18_TrNi-I repbase;    DNA;    INV; 6441 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6441
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 221-221 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           579..5201
FT                 /product="Gypsy-18_TrNi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MGNSKRKRRNSRDTSTSYSDSSCSSETNTRRSRQRKR
FT                 RRHGHKRSKRRSRKETRSDRRGQKYSEINSNREGTKTPPITSAVQLDMSNT
FT                 PVIINNQSNTDLPSTNNTTFDIPQVNNASSSSVPLSFPNFWAQNNFPVAFS
FT                 VVPEFDPSDNSQTIENWINKVNECAQIYSWNDRQICHYALPKLSGLAKKWY
FT                 KGLPSVLYTWDEWIQKLKLAFPSNENYGDLLSTMLRFRCRFGQSLEHYYYD
FT                 KMALINKCEITGTKAVGCLIHGIDDKFVRMGAGACMFNEPEQVLNYLRTVS
FT                 QNENNSFTNRSRIRTNTQSRQSNIPNNEQTKNSSTDTLRCFNCNEPGHISL
FT                 RCNKPIKRCNFCFKLGHDTKDCRKRNNTNDESTKVSSDREQNKAVMCITNN
FT                 DTDNEKYYKDITVNDITLRGYIDLGSKCTLMRRSSAELICNEWDTKNLPTL
FT                 QGFGNSAVEPLGRITVMLGIGTVKAETEVLVVSDQYLRTAILVGQSFTEKP
FT                 NVILLKTESELLFITTPDLSDNDSKVTLCADKDEIVLPKMTMPVNVIANDK
FT                 YTGGLYVQISLRVIPNNEYIVMPGLFSFQLGRGYIMLTNLSSNKLIINKGS
FT                 LLVRGHKFNETYYNEYIGIIDEAKNYEPLPLMDVKISTEISEQQKDQLYAL
FT                 LTKYRDCFAMNMTELGKTNITQMDITLTDDKPVVYNPYRISHSEREHLNKI
FT                 INDLLTNGIIRESTSDYSSPVILVGKKNGEKRLCIDYRSLNRKTMKDKYPM
FT                 PRIEDQLDRLGGNKYFTSLDLFSGYYQVPMSENSKRFTAFVTPDGLYEFER
FT                 MPFGLANAPSVFQRTINTMLKGRQNLALAYMDDLLVMSKTFEEGLEKLEKV
FT                 FQLLRSAKLTLNLKKCDFFQTRINYLGYEISSDGIRPGVAKVQAVMDFPEP
FT                 KNVHEVRQYVGLTSYFRRFIQNYSVIAKPLTILTKKNASWHFDEAQVNAFK
FT                 ELKARLTTRPVLALYDPQGEFEIHTDASKIGIGAILIQRVNTELPHPICYY
FT                 SRQTTSDESKLHSYELETLAVVCALSRFRVYILGKSFKVITDCAAIRSTMT
FT                 KRDLIPRVARWYILMQEYDFIVEHRDGTKMSHVDALSRNPSNTDVTQQVVD
FT                 VVDILAIDDDAWLRTAQEQDSEIQRIISILKDSNTKDIVEIHKNYTVKNDR
FT                 LYRVTTDNESTNLKWVVPKAVRWQIVRMNHDDAGHFGFDKTYNKVSQAYWF
FT                 KKMRRFIKKYCNSCLNCAHNKVPAGAKQGELHPIPKINKPFDTLHVDHCGP
FT                 FPISKKKNCHILVIIDAFTKFIFVKPVKSVKTSITIQIFEDYFSLFGVPRR
FT                 VISDRGTCFTSKEFSDFINKKGIKHILNAVASPRANGQVERYNRTIVDALT
FT                 AANHDKPENEWDLRLPQIQWSLNNTINKAIGCTPSEMLFGVQTTGVSDGIM
FT                 NSVVSESHVQLDRDKIRTDAELLIQRNQQKQKERFDSSHKPPAQYKIGDLV
FT                 RIEKEIRTESGHSRKLLPKFVGPFRISKVIGNDRYEVEDTPITRKEGSKPY
FT                 RSVYAVDKIHPWLVFNNDVISSDSE"
XX
SQ   Sequence 6441 BP; 2133 A; 1012 C; 1341 G; 1955 T; 0 other;
     agtcagaagt gggatagtga tctccacgtg cctcatgcag cggtctcctg aaggttcctg        60
     aacagtggat gattaaggtc agagcttaat gtcattataa actacctaca atatctacat       120
     cacatgctgt tattctcgcg gaatctacgt gacgaaattc caaatttaat cacgagacta       180
     ttgattaata ttgtgcaagt ctacgtacat tacaactaaa taggaaagtg gtgataatgt       240
     tgtgaatatc taacaactaa aagtgataca ttaacagtgt ttgtttacgt tgtgttggtg       300
     aaaattattt tcaatttgaa accgttacaa tttaaatagt taattttgtt gatttgaaag       360
     tgaaatcgta tgagtatatt tgacgttgtt attttattta tcgttgataa ttttgtttat       420
     tgaaaccgtc acaatttaaa tagttaattt tgatgattta aaagtgaaac cgtacgaata       480
     tatttgactt tgttattgta tttatcgttg atcattttgg ttattttttt tttaaaatag       540
     tagatacttt tgtactttga atcactttag ataaagtaat gggtaattct aagcgaaagc       600
     gacgcaactc acgcgatact agtacttctt attctgattc gtcttgtagt agtgagacta       660
     atactcgtag atctcgacaa cggaaaagac gacgtcatgg tcacaaacgt agtaaaaggc       720
     ggagtagaaa agaaacgcgt tccgatcgta ggggtcaaaa atattctgaa attaattcta       780
     atcgtgaagg aaccaaaacg ccgccaatta cctcggctgt acaattagac atgtctaaca       840
     ctcccgtaat tataaataat caatcgaata ccgatttacc tagtaccaat aacacgacat       900
     ttgatatccc tcaagtgaat aacgcaagta gttcatctgt gcctttgtca tttcctaatt       960
     tctgggctca aaataatttt cctgtagcat ttagtgtggt acccgagttc gaccctagcg      1020
     ataatagtca gacgatagaa aattggatta ataaggtcaa tgaatgcgct caaatttatt      1080
     cttggaatga tcgacaaata tgtcattatg cacttcctaa attgagcggt ttagccaaga      1140
     agtggtacaa ggggctgcct tcagttttgt acacttggga tgagtggatt caaaaattaa      1200
     agctagcttt tccttctaac gaaaattacg gagacttact gtcgacaatg ttaaggttcc      1260
     gttgtaggtt tgggcaatct ctagaacatt attattatga taaaatggcg cttataaata      1320
     aatgcgaaat aaccggaacc aaggctgttg gttgtctcat acatggtatt gacgataagt      1380
     ttgtacggat gggagccgga gcttgcatgt ttaacgaacc tgaacaggtc cttaattatt      1440
     tgcgcacagt gtcacaaaat gaaaataatt cgtttactaa ccgttcacgt attcgtacta      1500
     atacgcagtc tagacagtct aatatcccta ataatgaaca aactaaaaat agtagcacag      1560
     atactttacg ttgctttaat tgtaatgaac cgggacatat aagtttaaga tgtaacaaac      1620
     ctattaaaag atgtaacttt tgctttaaat taggacacga taccaaagat tgtcgtaaaa      1680
     ggaacaacac taatgacgaa tcgactaaag ttagtagtga cagggaacaa aacaaggctg      1740
     ttatgtgtat tactaataat gatactgata atgagaaata ttacaaagat attacagtga      1800
     acgatataac tttaagagga tatattgatt taggtagtaa atgtactcta atgcgtagat      1860
     ccagtgctga acttatatgc aatgaatggg ataccaagaa cttaccgacc ctacaggggt      1920
     ttggtaattc tgcagtagaa ccattaggta ggataacagt tatgttaggt attggtacgg      1980
     ttaaagctga gacagaagtt cttgttgtta gtgatcagta cttacgaaca gcaattctag      2040
     taggacagtc atttacggaa aaaccaaacg ttatactttt aaaaacggaa agcgaattgc      2100
     tgttcataac tacacctgat ttaagtgata atgactcgaa ggttacactc tgtgcagaca      2160
     aggacgaaat cgtattacct aaaatgacta tgccagttaa tgtgatcgct aatgataaat      2220
     atactggcgg attgtatgtg cagattagtc ttcgagttat tccaaataat gaatatatag      2280
     taatgccagg gctgtttagc ttccagttag gacggggtta tataatgttg acaaatttat      2340
     cttctaacaa attaataatt aataaaggtt ctttactagt taggggtcac aaatttaacg      2400
     agacatatta taatgaatat ataggcataa tagatgaagc taaaaactat gaaccgttac      2460
     cattaatgga tgtaaaaatt agtactgaga tatcggaaca acaaaaagac caattatatg      2520
     ctttattaac aaaatatagg gattgcttcg ctatgaatat gacagaatta ggcaaaacta      2580
     atataacaca gatggatatt acattaacgg atgataaacc agtagtttat aatccctaca      2640
     ggatatctca tagtgagcgc gaacatctta acaaaattat taatgattta ttaactaatg      2700
     gcataattcg agaaagtaca tctgattatt caagccccgt gattttagta ggcaagaaaa      2760
     atggtgaaaa gcggttatgc attgattata ggtctctaaa cagaaaaaca atgaaagaca      2820
     aataccccat gccacgtata gaagatcagt tagacagatt aggcggtaac aaatacttta      2880
     caagtctaga ccttttttcg gggtactacc aagtgccgat gagtgaaaac agtaagcgtt      2940
     ttactgcctt tgtaacaccc gatggtttgt atgagtttga aagaatgcca ttcggtctag      3000
     ctaacgctcc tagtgtattt cagcgaacaa ttaatactat gcttaaaggt aggcaaaatt      3060
     tggccttagc atatatggat gatcttttag tgatgtcgaa aacgtttgaa gaaggcttgg      3120
     agaaattaga aaaagttttt cagctgttaa gatctgctaa acttacacta aatctaaaaa      3180
     aatgtgactt ctttcaaact cgtataaatt atctgggcta tgaaataagc tccgatggaa      3240
     ttcggcctgg tgttgctaaa gttcaagcag ttatggattt tcccgaacct aaaaacgttc      3300
     atgaagttcg ccaatatgtc ggtcttacta gttattttcg tcggtttatc caaaattatt      3360
     cggtgatagc caaacctttg acaattttga ccaagaaaaa tgcttcgtgg cattttgacg      3420
     aagctcaagt taatgcgttc aaagaattaa aggctagact taccacacga cctgtgctag      3480
     cgttgtacga cccccaaggt gaatttgaaa tccacactga tgctagcaaa atagggatag      3540
     gtgcaatctt aatacaacgc gtaaatactg aacttccaca ccctatatgc tattacagtc      3600
     gacaaacgac gtctgacgag agcaaattac attcatatga gctcgagacc ttggcggtgg      3660
     tctgcgctct cagcagattt cgagtctaca tattaggtaa atccttcaaa gtaatcacgg      3720
     attgtgcggc tatacgcagc acaatgacaa agagggacct aataccgagg gtagcgcgtt      3780
     ggtatatttt gatgcaggaa tatgatttta ttgtagagca tagagacggc actaaaatga      3840
     gtcatgttga tgcactgtca cgtaatccga gcaatactga cgtaactcaa caagttgttg      3900
     acgtagttga cattttagca atcgatgatg atgcttggtt gcgtacagcg caggaacaag      3960
     actctgaaat acaaagaatc attagtattc taaaggattc aaataccaaa gacatcgttg      4020
     agattcataa gaactatacc gttaaaaatg accgtttata tcgagtaacg acggacaatg      4080
     aaagcactaa tctaaagtgg gtagttccaa aagcagtacg atggcaaata gttcgtatga      4140
     atcacgacga tgctggacac ttcggctttg acaaaactta caataaagtg agtcaagcct      4200
     attggtttaa aaaaatgagg cgtttcatta aaaagtattg taactcatgt ttaaactgtg      4260
     ctcataataa agtacccgct ggagcaaaac aaggtgagct ccatcctatt cctaagatta      4320
     ataaaccatt tgatacactt catgtagacc attgtggtcc ttttccgatt agtaaaaaga      4380
     aaaattgcca tattttggtt ataatagacg cgtttactaa attcatattt gtaaagccag      4440
     taaaaagtgt caaaaccagt ataacaatac aaatatttga ggattacttt tcattattcg      4500
     gagtgcctcg tcgagttata tctgaccgtg gtacttgttt caccagtaaa gagttttccg      4560
     acttcatcaa taaaaaggga attaagcata ttttaaatgc ggtcgcctct cccagggcca      4620
     atgggcaagt tgagaggtat aaccgtacta tagttgatgc ccttacagct gctaatcacg      4680
     ataaacctga aaatgaatgg gatttacgtt tacctcaaat acaatggtca cttaataata      4740
     ctataaataa agctattggc tgcaccccat cagaaatgtt gtttggtgtt caaacgactg      4800
     gtgtttcaga tggtattatg aattcggttg tgtcggaatc tcatgtccag ttagaccgtg      4860
     ataaaataag aacggacgcg gaactgttga ttcaaagaaa tcaacaaaaa cagaaagaac      4920
     gttttgatag ttcacataaa ccaccagctc aatataaaat aggtgattta gttcgtatcg      4980
     aaaaagaaat tcgtacggaa tccgggcaca gtcgtaaatt attacctaaa ttcgtagggc      5040
     cgtttaggat ttcaaaagta attggtaatg atcgctacga agtagaagat actcctatca      5100
     ccagaaaaga aggtagtaag ccttaccggt cagtgtatgc ggttgacaag atacatcctt      5160
     ggctcgtatt taataatgat gtgatctcga gtgattcaga gtaaatcagt attgtaatga      5220
     atatgtgtag tagaactgtc agacccattc ttaattatta ttattacgtg aatgaatata      5280
     atgagatgat gatgtctaat aatgtattat ggaaagaagt aaatgagtgt gaaatgcatg      5340
     acagattagt atttgttaac aaaattatta tatctacttt tgtagttaga tcgaaacagt      5400
     ataagtataa atatgagtta cataaaaatg aaaccagtat gaagtaaata agtctgtcga      5460
     gaaatcattg taaagggaaa agttaagttt cgaagtttaa agaacctaat taatttatta      5520
     ttatgtattg tgtgaagtat aaatcgatag atattatgat agtgatttta gccagaatta      5580
     gacttataga tattgtaata ataacctgaa agtaaatgtt gtatgaaaaa tgataattag      5640
     taatgagtga atctacaagt gaaagcgctt atatttgatg atacgagata agagtgagtc      5700
     gctaccggtg agaatgcctg tagtcgatgt tagatttaag agtgagtcgc taccggtgag      5760
     agtgcctgta gtcgatgtta gatttaagag tgagtcgcta ccggtgagag tgcctgtagt      5820
     cgatgttaga tttaagagtg agtcgctacc ggtgagagtg cctgtagtcg atgttagatt      5880
     taagagtgag tcgctaccgg tgagagtgcc tgtagtcgat gttagattta agagtgagtc      5940
     gctaccggtg agagtgcctg tagtcgatgt tagatttaag agtgagtcgc taccggtgag      6000
     agtgcctgta gtcgatgtta gatttaagag tgagtcgcta ccggtgagag tgcctgtagt      6060
     cgatgttaga tttaagagtg agtcgctacc ggtgagagtg cctgtagtcg atgttagatt      6120
     taagagtgag tcgctaccgg tgagagtgcc tgtagtcgat gttagattta agagtgagtc      6180
     gctaccggtg agagtgcctg tagtcgatgt tagatttaag agtgagtcgc taccggtgag      6240
     agtgcctgta gtcgatgtta gatttaagag tgagtcgcta ccggtgagag tgcctgtagt      6300
     cgttattaag tgatgtgtat aataatttta acgattaatt cctggtcctg ttaattgttt      6360
     cactaacctt ttttttttct ctatctcttt tggttttgtt tgttaaacgc gaggccgcgt      6420
     ttgacgtcag gattagccga a                                                6441
//
ID   Gypsy-18_TrNi-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 175-175 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 224 BP; 61 A; 30 C; 55 G; 78 T; 0 other;
     tgttagcata agataattta tatacgcaat attgtttaat taactggcaa cacagaaccg        60
     gatatacgtt ttgatttgac gtttgatgaa aaactagttt tggcggggca tttttggtgg       120
     gagtcatcgt cgaagtcggc ctcgtgtctg ttgagactgg attgtgcgtg tgaaattgta       180
     gaagaataca taatatttgc aacgaatgtc tgggttttct ttca                        224
//
ID   Gypsy-18_TrVa-I repbase;    DNA;    INV; 5135 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5135
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 263-263 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..5072
FT                 /product="Gypsy-18_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPNDLDNQANQANPAQNALNPASTLEEKLNALTNVVT
FT                 QLVQLQVQQVSASTSTTRFSFNPFQENSEEIGDYFNRFKLQLELCKLPTAT
FT                 WASHIRVHMGSHLNSILTNIAYPTPVETLNYEEIVSKLTSYFSKSRNKFSE
FT                 IINFRKLLQKPEESAVAYATRLKAAARYCQFEQFLDFSLRVQFIHGVSRDD
FT                 IRDEIVSKQPETFDSALKIASDLEATREAGLQLKPKLEVNNSVNRFSHDSR
FT                 PKLKQSNAQVSRSHSNNRSYSNNRSYSNNRSNSNNRSYGNNRSYSNKGKRN
FT                 FKSNFSQPNPNDNSSCLSCGGNHDRKSCKFRNNQCDVCHRRGHLAKVCMKK
FT                 STNSSINLHATEPHSSNCSQFSEDPCSEFLQFSVNKVGTSINQLGINSVDI
FT                 PPPPCMLNVLVNGKSLQMELDTGGACSVISSKVFNQLLPNTILQRTSRCFV
FT                 SFTKEKIACIGYAKVKVTLQNRTKLLNIFVVNQPVDSVFGREWIVHFKDLL
FT                 PLTDLFSPSISQVKTTLDLSTQTDEVQTRLKNLLNKYDKVFSDSAGTLEGP
FT                 PSRLYLKSNAKPIFARARQIPLALQARYAKEIDSKLSSGLYTKVTHSEWAS
FT                 PTHVVIKNGKLRITGDYKFTLNPQLIIEEYPIPRIEDLFNKVQNSKYFCKL
FT                 DISDAFMSIVCDEETCELMTLNTPTHGLIRPRRAQYGVASIPAIWQRRLEE
FT                 LLRNIDGSLNFFDDILLFAVSIDKLFIILEKALDCLFKAGLRLKRSKCGFL
FT                 LTCVEFLGHLIDGSGLHKLDKHVSAVTNAPRPNTPNELRSFLGKVIYYHSF
FT                 IPHLSTITFPLREMLKEEGRLKWSKEGLDAFQKLKDLLVSDQILVPYQPDL
FT                 PLILATDASPVGLGAVLSHIMPDQSERPIAYASKSLNSTEKAYSQIDREAL
FT                 AIVWGVKRFFQYLYGRKFTIFTDNKPISHIFAPNALLPKFTLSRSANYASY
FT                 LSNFVYDIKHKHADKNQNADYLSRIPSTNSHSSKSFKDDSIALGQQQISDD
FT                 FDTFVQEQTLQLPVTANDIALETKIDPELAPLLLALQQGKNLTDLNCKGKE
FT                 LDYSISNGCLMLGHRVIVPKKFRNKLLSELHLGHIGITKMKGIARSLIYWP
FT                 KIDVDIENIAKNCVTCLQHSRMPPKDNSHLWEYPNAPWSRIHVDYAGPLLG
FT                 KFLLVVVDAFSKWTRVIVTSSSTSETTCQVLQHLFSLYGIPDTVVSDNGKQ
FT                 FTSDEFKDFLRTQGVRYHKLTAPYHPSTNGQAERFVQTIKSAIARMNPTQK
FT                 TLQQCIDSYLQKYHRSPHPFTGKPPSLLFFGRIIKTRLDVVVPEVKIPPSQ
FT                 SQSPSSQIRKAPKLRSFEVGDKVMFRWYRGSNRWLPGIVDSKWGKLHYSIR
FT                 YQNSSHKRHIDQLLSCPKKVQFSDEVTERIIDNTSSRKLRHYSTTAPCAES
FT                 PMTNQSDSQCPPRNTVPNMSTVPSMSPTQETTSLTTFSPSHSQTHPVSVSK
FT                 PQTSQSKTQSSVSQPQNSKSKTPVSVSQPQTSSVVTPYTYSTPCVSNATTS
FT                 SNYLTPQLPSSSQSSSLPQTQTISPSSETSVKESQPRTSSFPAKSSFSSSE
FT                 SFPVPIGRGRGHFKQPKSNHTTDSTPTARPELRRSNRPRKPRRPYSPSESS
FT                 PRKNEDPEVEITFF"
XX
SQ   Sequence 5135 BP; 1571 A; 1215 C; 859 G; 1490 T; 0 other;
     aatggcgacg agtctttatt tcgcgaactc gcgtttcttc tcgctcgtaa gtagtaattc        60
     ggagttttcg gtcggaagtt gaaaaccgtg cggttctcgt gtcagttttt cgctcgcatc       120
     tcttatcaca ttgcataacg ccgaaacggt accgcgtgtg atctcgctat ataaaaatgc       180
     cgaacgatct ggataaccaa gctaatcaag ccaatcctgc tcaaaatgct ctcaatccag       240
     catcaacttt ggaggaaaaa ctcaatgccc tgactaacgt ggtaactcaa ttggttcaac       300
     tccaagtgca acaggtatca gcctcaactt cgaccacaag gttctcattc aacccattcc       360
     aagaaaactc agaagaaatt ggtgactatt tcaatcgttt caaattacaa ctagaactgt       420
     gtaagctccc aacagctaca tgggcttcac acatccgagt tcacatgggt tcacacctga       480
     actcaattct cacaaatatt gcctatccaa ctcccgttga aacccttaac tatgaagaaa       540
     ttgtctccaa attgaccagc tacttctcca aatcacgaaa caaatttagt gaaattataa       600
     attttaggaa attgctacaa aaaccagagg aatctgcagt cgcatatgct acccgtctca       660
     aagcagcagc acgttattgc caatttgaac agtttttaga tttctccctt cgagtccaat       720
     tcatccatgg tgtaagccga gatgacatcc gtgatgaaat tgttagcaaa caaccagaga       780
     cctttgatag cgccttaaaa atagcatctg acttggaagc gacaagagaa gccggactcc       840
     aactgaaacc taaacttgaa gtgaacaaca gtgtcaaccg attctcccac gacagtcgtc       900
     ccaagctcaa gcaatctaac gcacaagttt ctcgctctca cagcaataat cgttcctaca       960
     gcaataatcg ttcctacagc aacaatcgct caaacagcaa caatcgctct tacggtaaca      1020
     accgctctta cagtaataaa ggtaaaagga attttaaatc taatttttct caaccaaatc      1080
     caaatgacaa ttcttcttgc ctatcctgtg gtggcaatca tgatcgaaaa tcttgcaaat      1140
     ttcgcaataa tcaatgtgat gtctgtcatc gtagaggtca cttggcaaaa gtttgcatga      1200
     aaaaatccac aaatagctct ataaacctac atgcaactga gcctcatagc tcaaattgtt      1260
     ctcaattctc agaagatccg tgctctgaat tcttgcaatt ttctgtaaac aaagttggta      1320
     catcaattaa ccaacttggt atcaatagtg tagatattcc tccaccgcct tgtatgttga      1380
     atgtcctcgt taatggcaag tctcttcaaa tggaacttga caccggtggg gcatgctcag      1440
     ttattagctc gaaagttttc aatcaacttc tccctaatac catacttcaa cgcaccagtc      1500
     gctgttttgt cagtttcaca aaagaaaaaa ttgcatgtat tggttacgct aaagtcaaag      1560
     ttactctgca aaatcgaaca aaattgctaa acatttttgt agtaaatcaa cctgtcgata      1620
     gtgtgtttgg cagagaatgg attgtacatt tcaaggatct ccttcccctc actgatctct      1680
     tttcaccctc tattagtcaa gtgaaaacaa ctctagattt aagtactcaa acagatgaag      1740
     tacaaactcg tcttaaaaac ttgttaaata aatatgataa agtgttcagt gattctgcag      1800
     gtaccttaga aggccctcct agtcgattat atttgaaaag taatgcaaaa cctatctttg      1860
     cacgagctcg tcaaatacca cttgctctgc aagctcgtta tgcaaaagaa attgactcaa      1920
     aactgagctc aggtctctat actaaggtta cccactctga atgggcatcg ccaacccatg      1980
     ttgtaattaa aaatggtaag ctaagaatca ccggcgacta caaatttact ttgaatcctc      2040
     aactaattat agaagagtat ccaattccta gaatagaaga tttatttaac aaggtgcaaa      2100
     actctaaata tttttgcaag cttgacattt cagatgcctt tatgagtatt gtttgtgatg      2160
     aggaaacctg tgaactaatg acactaaata ctccaactca tggtctcata agacctcgcc      2220
     gcgcacagta tggagtcgcc agtatacctg ccatctggca acgccgtctt gaggaacttt      2280
     tacgaaacat tgatggttct cttaactttt ttgacgatat tctcctgttt gctgtttcca      2340
     tcgataaatt gtttatcatc ctggaaaagg ctctcgattg tctttttaaa gcaggtttga      2400
     gactcaaacg ttccaaatgt ggatttcttt taacctgtgt cgaattctta ggtcacttaa      2460
     ttgatggatc aggtttacat aagctagata agcatgtcag tgccgttaca aatgccccaa      2520
     ggccaaatac tcccaatgaa ctccgctcat ttctcggaaa agtgatctat tatcactcgt      2580
     tcattccgca tctgtccacc atcacattcc ctttgcggga aatgctgaaa gaagaaggta      2640
     gactcaaatg gtccaaagaa ggtctggatg cttttcaaaa actcaaagat ttgctcgttt      2700
     cagatcaaat tttagttcca tatcagcctg acctacccct tattctagca acagatgcaa      2760
     gtccagttgg cctaggtgca gtcttgtctc atataatgcc tgaccaaagt gaaagaccca      2820
     tagcttatgc aagcaaatct ttaaactcaa cagaaaaagc atactcccaa attgatcgtg      2880
     aagctcttgc aatagtttgg ggtgtaaaac gcttttttca atatttatac ggtcgtaaat      2940
     tcacaatctt cacagacaat aaaccaatct cgcacatttt tgcaccaaat gcactcttgc      3000
     ctaagtttac tctttcccgc tctgctaatt atgcttctta cttatccaat tttgtttatg      3060
     acatcaagca taaacatgcc gacaaaaatc aaaacgcaga ctacctatcc cggattccaa      3120
     gcaccaatag tcattctagc aaatccttca aagatgattc tatcgctctc ggacaacagc      3180
     agatctctga tgattttgac acttttgtac aagaacaaac cctacaactg cctgtcacag      3240
     ctaatgatat tgctttggaa accaaaattg acccagagtt agcgccgtta ttgctcgcct      3300
     tacaacaagg taagaatttg actgatctta actgcaaggg aaaagaatta gattattcaa      3360
     tctcgaatgg atgcctcatg ctaggtcatc gtgtcattgt gccaaagaaa tttcgcaata      3420
     agctgctgag cgaactgcac cttggacaca ttggtatcac taaaatgaaa ggtattgccc      3480
     gttcactcat ttactggcct aaaattgatg tagacataga gaatattgca aagaattgtg      3540
     ttacttgttt acaacactca agaatgccgc ccaaagataa ctcacatttg tgggaatacc      3600
     caaatgcacc atggtcgcgt atccacgttg actatgctgg tccccttctt ggaaaatttt      3660
     tgctagtcgt agtagacgca ttctccaaat ggactagagt aattgttact tcttcatcga      3720
     cgtcagaaac tacttgtcaa gttctacaac atcttttctc tctctacggt attccagaca      3780
     ccgtcgtctc agacaatggc aaacaattta catccgatga attcaaagat tttctgcgaa      3840
     ctcaaggagt acgataccac aagcttacag ctccatacca tccatcaacg aatggacaag      3900
     ctgagcgatt tgttcagact atcaaatcag ctatagcccg tatgaatccg acacaaaaga      3960
     cgttgcaaca gtgtattgat tcatatctcc agaaatacca tagatctcct catccattca      4020
     ccggaaaacc tccttcgttg ctcttttttg gacgtatcat taaaacaaga cttgatgttg      4080
     ttgtgccgga agtcaaaatt ccaccttctc agtctcaatc accatccagc caaattcgaa      4140
     aagctcccaa acttcgctca tttgaagtcg gagacaaagt aatgtttcgt tggtacagag      4200
     gttcgaatcg ttggttacca ggcattgttg attccaaatg gggtaagttg cattattcca      4260
     ttcgttacca gaattcttct cataagcgac atattgatca attattatct tgtcccaaaa      4320
     aagtccaatt ttccgatgaa gtaacagaac gcatcatcga caatactagc agtcggaaat      4380
     taagacatta ctcgactact gctccatgtg ctgaatcacc tatgactaat caatctgatt      4440
     ctcaatgtcc gcccagaaat acagtgccta atatgtctac agtgcctagt atgtctccaa      4500
     cgcaagaaac aacttcgtta actacgtttt ctccgtctca ttcacagaca catccagttt      4560
     ctgtttccaa gccgcaaact tctcaatcaa aaactcaatc ttctgtttct cagccgcaaa      4620
     attctaaatc aaaaactcca gtttctgttt ctcagccgca aacttcaagt gtagtaactc      4680
     cttatactta ctcaacgcct tgtgtttcaa acgctacaac ttcaagcaat tacttaacgc      4740
     ctcaactgcc atcttcttct cagagtagtt ctcttccgca gactcagaca atttctccgt      4800
     cttctgaaac ctctgtcaag gaatctcagc cgcgaacttc ttcttttcct gccaagtcat      4860
     cattttcaag tagtgaatcg tttccagttc caataggtcg tggtcgtggt catttcaaac      4920
     agccgaagtc caatcatact actgattcaa ctccaacggc aaggccggaa ctcagaagat      4980
     ccaacaggcc gcgcaaaccg agacgccctt attctccaag tgagtcctcc cctcgtaaga      5040
     atgaagaccc agaagtagaa attacctttt tctaaaatct agtcaattgt ttatgttcct      5100
     tttgttaatt atttttttta atgtgctggg agatt                                 5135
//
ID   Gypsy-18_TrVa-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-18_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-199
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 322-322 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 199 BP; 57 A; 43 C; 23 G; 76 T; 0 other;
     tgttacatcg tatatgttag gttggtacta aattgtaagt tggcacacct gactgtcaac        60
     ctcatatcaa caacagctgt tcattctaat gttcctattc gtattaaaag caaggtgtct       120
     ccaatcctaa actctctctc tctctttttt ctattcacta attaattaat tctcattatg       180
     atatattcac gatacatca                                                    199
//
ID   Gypsy-19-I_NVi repbase;    DNA;    INV; 5914 BP.
XX
AC   .
XX
DT   16-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-19-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5914
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 775-775 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           109..1179
FT                 /product="Gypsy-19-I_NVi_1p"
FT                 /translation="MRVSWIYRLNKEQLISELRGKNLNCEGTVVELRQRLV
FT                 XYVRKNPQDFVGKAEDPTGYDEEADLKQDLELERYELIQRTLEETRNAGRS
FT                 STPTGDPPEIPPGENKVLDQIRKWNCHFEGRDVYSFLERVRELQASYGFTG
FT                 EQLLQGAPELLRGEALQWRRNYASDCRTWEELEIRLRNFYLSSGERRNLTR
FT                 QVAERIQKPNENIRSYCNALTTLMRRRGGYTLIEQLDNIYYNMKPELQLRV
FT                 RREEITDVPQLIQRIEEYEDIAAKLREQERKTAINSASTSKNTTDYYNRAE
FT                 CCWRCKQRGHSRADCKNVARKFCSVCGKDGVLTRDCHGFPDRSGNAPRDGS
FT                 TVAGDRPKTADTS*"
FT   CDS           join(984..4178,4182..4691)
FT                 /product="Gypsy-19-I_NVi_2p"
FT                 /translation="MLLALQTTRPFPRRLQKCSTEVLFRMRKGRRSHKRLP
FT                 RIPGSFGKRAKGRLYSSGRPSQDGRYLVNVQINQDTVLALVDPGAVSSFIT
FT                 PETAMIGQNNGWRHGKQETIATLADGSTTELTDYVEGKATTLGATFRNKFI
FT                 IMKGLRHEMLLGMDALRKLNIRLIIAGKELQPNRSNTSVLSVSDVGIQEIS
FT                 KDQQTRVDELIQYEKELFGXIQGPTPLIEYTIKVTESNPIKQRYWPRNPAM
FT                 QQIIDEAVEEMLQEDVIEPSDSAWSSNIVLAKKKDGKRRFCINFQGINKIS
FT                 IKDAHPLPQVHATLNKLRGAKYLTTIDLKNGYWQIPLSEESKKYTAFTVPG
FT                 RGLMQFKVLPFGLHSAPAAFMRLMNAVITPDLEPNVFCYLDDIVIVTEDFE
FT                 QHLQLISETFRRLRDAKLKPNWEKSHFCRKQLKYLGHVVNEEGLHTDPEKV
FT                 RAITDLQPPTNLKELRRFSGLISWYRRFIPQVAKKTAPLNRLLKKKVKWEW
FT                 GPDQQEAFERLKEDLVQAPVLACPDFAKTFVLQTDASNEGLGAVLTQEEEG
FT                 KERVIAYASRSLNQAERNYSATEKECLAIKWGIWKFREYLEGYHFVVLTDH
FT                 QSLKWLEKIDNPSGRLARWAMELAQWDYEVKYRRGKDNTVADALSRQPVAV
FT                 CNIDIKTNCTWYTKKLTAVRQDPKTYPEYCIKNGALHRHILHTLDFNDTDA
FT                 TEDWKICIPTEKRTEVLRECHDDLTAGHLGVAKTLQRLARRYYWPGMLQDG
FT                 ARYVRSCINCQTYKAQQQTKAGTMHATNVEQPWEMVSIDLVGPQPRSNKGN
FT                 IWLLVMQDRFTKWVELAALKKADSRAIIRHVKEKVFLRHGCPNTLVSDNGR
FT                 QFVSREFEEFLKENGVNHRKTPPYSPQCNPVERTNRVVKTMIAQYVGKHQK
FT                 KWDENLRELEFAYNTASSTATGYTPAYLNTGREFRTPGSLHQKVGSQHTTP
FT                 LSSRIQHIKDAIELAKAQMARQFEKQQKHYNLRRREWKPNIGDKVVRKLVT
FT                 LSSKADARNAKLAPKYSKPLTVKRQVSPVIFDLQDDRGRYVKHIHVKDLKP
FT                 FTDAEQELMRQRRKTTVSRQTNAKKDGQPASQKRPRESHTDVGRDIGIRTR
FT                 VSRHHRHRSPNLHPEPRGRGILSGTWGRSNNSRVSNRASFRQPYQQHHPKD
FT                 STSPNKNKGLRSDESLGRSGRATTTLDHRHECPRVRSCSNFYEPSQPGEKE
FT                 PEAKAQQAPGTKTTMAHYRRRNRE*"
XX
SQ   Sequence 5914 BP; 1867 A; 1481 C; 1450 G; 1104 T; 12 other;
     tggcgctcgg acagggacct gattaagaat atttcgccta aaattttttt ttacgataaa        60
     ttgtacacag aacatcgtct cgaactaaaa ccggggattt tttttacgat gagggttagt       120
     tggatttacc gcctcaacaa ggagcagctt atctccgaac tacgggggaa aaacctcaac       180
     tgcgagggta ccgtagtaga gcttcgccaa cgactagtty gatatgtccg aaagaatcca       240
     caggatttcg tcgggaaagc agaagatcca actggatatg atgaagaagc cgatttgaaa       300
     caagacctag aactcgaacg ctacgaatta attcaacgaa cgcttgaaga gacccgcaac       360
     gccggacgct catccacccc gaccggagat ccaccggaaa taccaccagg agaaaacaaa       420
     gttctcgacc agatacgcaa atggaactgt cactttgagg gaagagacgt ctactctttc       480
     ttagaacggg tccgggaact acaggcatcg tacggattta ccggtgaaca gctactgcaa       540
     ggagcccctg aactgctgcg aggagaagcc ctgcaatggc gacgaaatta cgccagcgac       600
     tgtcgracct gggaggagct cgaaatcagg ttaagaaatt tttatttatc gagcggagaa       660
     cgacggaatc taacaagaca agtcgccgaa aggattcaga aacccaacga gaacataagg       720
     tcttactgca atgcattgac gaccctgatg agaagaaggg gaggatatac gttgatagag       780
     caactcgaca atatatatta caatatgaaa cccgagttac aattgcgggt gcgcagggaa       840
     gagataacag acgtacctca gctcatacag cgcatcgaag aatacgaaga tattgctgcc       900
     aaactgcgcg aacaagaacg aaaaaccgcc atcaatagcg cctccacrag taaaaacacc       960
     accgactatt ataacagagc cgaatgctgt tggcgttgca aacaacgcgg ccattcccgc      1020
     gccgactgca aaaatgtagc acggaagttc tgttccgtat gcggaaagga cggcgttctc      1080
     acaagagact gccacggatt cccggatcgt tcgggaaacg cgccaaggga cggctctaca      1140
     gtagcgggag accgtcccaa gacggccgat acctcgtaaa cgtacaaata aaccaagata      1200
     cggtgctggc attggttgac ccaggggccg tgagttcgtt cataacgcca gaaaccgcca      1260
     tgatcggaca aaacaacggt tggcggcatg ggaagcaaga gacgatcgct acactggcag      1320
     acggctcaac caccgagctg acagactatg tggaaggtaa ggcgacaacc ctcggcgcca      1380
     ccttcaggaa caaatttatt atcatgaaag ggctacgcca tgagatgcta ttggggatgg      1440
     acgcgttacg caaactgaac atccgcctga tcatagcrgg aaaggaatta caacccaacc      1500
     ggtccaatac ctcggtactc tcagtcagcg acgtcggcat tcaggaaatc tcgaaagatc      1560
     aacagacacg agtggacgaa ctcatccaat acgaaaaaga gctcttcgga artatacagg      1620
     gccccacacc gctcatcgaa tacacaataa aggtaaccga atcaaatcca atcaaacaac      1680
     gctactggcc acgcaacccc gccatgcaac aaataatcga cgaggctgtc gaagaaatgt      1740
     tacaggaaga tgtgattgag ccatccgaca gcgcytggag ctccaacata gttctcgcaa      1800
     agaagaagga tggaaagagg cgtttctgca tcaacttcca gggcatcaac aaaatcagca      1860
     tcaaagatgc acacccgcta ccacaagttc acgcgacact aaacaaactc cggggagcaa      1920
     agtacctaac cacgatcgac ctgaaaaatg gatactggca aataccgctg tcagaggaaa      1980
     gcaagaagta caccgctttt accgttcccg gaagaggctt aatgcaattt aaggttcttc      2040
     cattcggttt acactcggca ccagcagcat tcatgcggct gatgaacgca gtcatcacac      2100
     cagatttaga accaaatgtg ttctgttacc tcgacgacat agtcattgtt acagaggact      2160
     ttgaacagca cctacagctg attagcgaaa ccttccgccg gttacgggac gccaagctaa      2220
     agccgaattg ggagaaaagc cacttttgca gaaaacagct gaaataccta ggtcatgtcg      2280
     tcaacgagga ggggctacac acggacccag agaaagtaag ggcaatcacc gatctgcaac      2340
     cgccaacgaa cctcaaggag ttacgccggt tttcaggatt aatatcctgg tacaggaggt      2400
     ttattccgca agtggcaaag aaaacggccc cccttaacag gctattaaag aagaaagtga      2460
     aatgggagtg gggtcccgac caacaagaag cattcgaaag gctcaaagaa gacctagtgc      2520
     aagccccagt cctagcgtgc ccagatttcg ccaagacatt tgtgttacaa accgatgcca      2580
     gcaacgaagg attaggggca gtcctaactc aagaagagga gggaaaagaa cgggtgatcg      2640
     cctatgccag ccgatcatta aaccaggccg aacggaacta ctcagcaaca gaaaaagaat      2700
     gtctcgccat aaaatgggga atttggaagt tccgagaata tctcgagggc tatcattttg      2760
     tcgtcctgac agaccaccag tctcttaaat ggctcgagaa gattgacaat ccgtccggta      2820
     gattagcacg atgggcgatg gaattagcac agtgggatta cgaggtcaaa taccgaagag      2880
     gtaaggataa caccgtcgca gatgctctat ccagacaacc agtagctgta tgcaacatcg      2940
     atatcaaaac gaactgcaca tggtacacaa aaaaattgac tgctgtccgg caggatccaa      3000
     agacctatcc ggagtactgc atcaagaatg gagcattaca ccgccatatc ctacacacgt      3060
     tggattttaa cgacacagac gcgaccgaag actggaaaat ctgcataccc accgaaaaac      3120
     gaaccgaagt tttaagagaa tgccatgacg atctgaccgc agggcatttg ggagtggcca      3180
     aaacactaca gcgactggcc cgaaggtact actggccagg tatgttacag gatggagcca      3240
     ggtacgtgcg tagctgcata aattgccaaa cttacaaagc tcaacaacag acaaaagcgg      3300
     gtaccatgca cgcgaccaac gtcgaacagc cttgggagat ggtctcgatt gatcttgtcg      3360
     gacctcaacc acggtccaac aaaggtaaca tatggctact ggtaatgcag gacagattta      3420
     ccaagtgggt ggagctagca gcacttaaga aagccgacag cagggccata atccgtcacg      3480
     taaaggaaaa agttttcctc cgccatggtt gtcccaacac gctagtcagc gataatggtc      3540
     gacaatttgt cagcagagaa tttgaagaat tcctgaagga aaacggggta aatcaccgaa      3600
     aaaccccgcc gtatagtccg caatgcaacc cggtagaacg gaccaacagg gtggtaaaaa      3660
     caatgatcgc ccaatatgta ggcaaacacc agaagaaatg ggatgaaaat ttgcgcgagc      3720
     tagagttcgc ctacaatacc gctagcagca cagccaccgg ctacactccg gcatatttaa      3780
     acacaggaag agagtttaga acgccaggta gccttcacca gaaagtggga tcgcagcaca      3840
     ctacaccact gtccagtaga attcagcaca taaaggatgc cattgaatta gcgaaggcgc      3900
     aaatggctcg tcaattcgaa aaacaacaga agcattataa cctccggcga cgggaatgga      3960
     aaccgaatat cggcgacaaa gtagtcagga aattggtaac tttgtcgagt aaggccgacg      4020
     cacgaaatgc caagctagcc ccaaaatact caaaaccgct tacggtcaag agacaggtgt      4080
     cgccggttat atttgatctg caggacgaca gagggcgcta cgtgaaacat atacacgtga      4140
     aagacctcaa gcccttcacc gacgcagaac aggagctata aatgcgccaa cgacgaaaaa      4200
     ctacagtcag tcgtcaaacc aacgccaaga aggatggaca accggctagt cagaagcgcc      4260
     ctcgtgagag ccacaccgat gtcggtagag atatcggtat acggacaaga gtttctcgcc      4320
     atcatcgaca ccggagcccg aatctccacc ctgagcccag aggccgcgga atattgtctg      4380
     gaacatgggg ccgaagcaat aacagcagag tcagcaatcg agcttcgttt cgccagccat      4440
     accagcagca ccatccaaaa gactctacta gtccaaacaa gaataaaggg cttcgtagtg      4500
     acgagtcctt gggcagaagt ggcagagcaa caaccacact ggatcatcgg catgaatgtc      4560
     ctagggtccg ttcatgctcg aatttttatg agcccagtca accgggagaa aaagagccag      4620
     aggcgaaggc tcaacaggca ccaggcacaa agactacgat ggcgcactac cgacgaagga      4680
     atcgggagta gctccgaaga agacgaagaa ggtagaaatt tcgtttatag aataaaatta      4740
     ggatattata ttttagtttt aagttagatt aaggcgaaaa taagcgaatt tgtagagttt      4800
     aagacatatt cagggtaaac cgataagttg cgaccaaaca agccgttatt gtagactcag      4860
     ccgcaaaaat cactagggtc taggaactag gctaggtcga ctcctatgca cacggacctt      4920
     aagtctgtgg acacaaccgc tatagaaaaa ccgaaagcac cgcgccgggc acgatcaaaa      4980
     caaatcggcg aagaagcggg aaattttttt tatatggagt taaacgcaca gcgacgcgaa      5040
     tgaattttcg cccacataaa aaatgtaaac atgcgaaayt tcgagatcgt ctcacaaatt      5100
     cacacattta cacgtcgcta gcatataaat agagacgata aagggcgcgc cggcagtaaa      5160
     atggaaaact tcgatatcga aacgctggac gaaattcttg cgctgttgga ggccgacctc      5220
     ccagcggacg cactggagta tagtccgggc gagcctttat cggcaccgga ctatactcca      5280
     tcaccaatcg cgccgcatcc gcaaccggca ttggcatcga agccaatgca ggtgccagca      5340
     ggggacaatc cgcggccaac aacatcaaag ccgcggatca tcagcgatgt cgtggtgcct      5400
     cccctgctgc acctcaaacc ggcaccgaaa ataaagagca cgaggccgar gagcaccgca      5460
     cgccacgttc caacgaggaa gaaccgccgg ggcccacaac acgraacrat tgtggctaca      5520
     atcgacctaa cgacaccgcc atcgtcgccg aaacatcmtc cgccgccgcc tgtgacgaca      5580
     acacgaccgg tcgtcacgcc ctcgcggcca cctccaccac cacgcgactc aacggccagc      5640
     ctcccgcgtc gtttggtgcg gctaccggat gggcatgacg tcattgtgcc aatcggcgta      5700
     aaaaaatacg tcgtgcggta caatggcgtt aagcggctac tccgcctggt accgacgacg      5760
     ggcgaggtca gacatgtggg cgaggccaga agcacggaag tgagttttat tattttttta      5820
     gatttatttt tcttttctcg tcgcgcatag tygttttttt tctaagcgcg aaatttcgct      5880
     tcgcgtaatt tcacgctccg aagggagggg gaga                                  5914
//
ID   Gypsy-19-LTR_NVi repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   16-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1290
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 776-776 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1290 BP; 346 A; 377 C; 314 G; 252 T; 1 other;
     tgtgacgaga cacgagtctc gcacatgtaa atacgtgtga aggcggccgc aatagacgcg        60
     gcatgcgcag cgcgcgcgcg caacgaacaa aaggcgaatc cgcacgacgc ggagcgagcg       120
     cgcgcgcgca acatccgcaa ggcgagtccg cacgagcgcg gagcgcggca gccggcgagc       180
     gactcagcga cgacgcgcca ggcggcgcga gcggcgtacg cggtgcgccg tgaacgcacc       240
     catacatatc cgcgccgcgc gcctttataa ggcggatcgc gcggcacgat gggcagttct       300
     actcgagctc cactccaggt agcatcgtgc gcacacgtta ctacagggaa cagcgagaga       360
     tagatctgcg ccgacgaaat cgtctcgtga gcacacgtga cgatttggta gacgaaccga       420
     aacccgaaaa ctccgaattg ccgtcgtgag cacacgaggc aacccggaac acccgagcga       480
     catcgagcct cgtctacgtg agcacacgtg agcgataccc ggtgccaccg taaaaatcct       540
     aacctacatt ccgacacatt gctgcctccc tctgccactg tgagcccaca gggttaaggg       600
     agtaacaata rtaccgccgg cgattcgccc ggtcgtgcgc tcacgtcctg gtgaaacaaa       660
     ggtaaattcc taaccaacaa agccagcctt acgccgacat ctcacgactc gctttatctc       720
     tgtgcgcaca caggataaag agaggaacga gacgagcgac gaagatttgt gaagccgtgc       780
     gcatcacgac tccacaaatc cgagggataa cctcaaaacc ccgttacact atcccggccg       840
     ttactgtgcg cacacagagc ggtcgagatc gttgttacgc gacacattcg gatcggtgta       900
     gccgtgcgca cacgactcca ccgtaccgaa tgaattccta acctcaaaat ccgccaccga       960
     tccgtcatac cgccaccgta ccgaaacacc gtagccgcga acaccgaatc attcttgtaa      1020
     cgaaatcgcg tagatattct tgtaaattgt taaccgcgtt agtttaaaca attctatttg      1080
     taaaggcgaa atatttttaa caagacgcat aattgatttc tgtttcagcc gggatttaac      1140
     aactgattcc aaattgctat tctttactta agaaatatat tttgttatta ttaagaatat      1200
     aaaaacagac tcttttcttg cccctttccc ctatccagat cctggaaccg actgactatc      1260
     cagtctcttg gggaaagtta aaccgttaca                                       1290
//
ID   Gypsy-190_AA-I repbase;    DNA;    INV; 5019 BP.
XX
AC   supercont1.100;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-190_AA_;
KW   Gypsy-190_AA-LTR; Gypsy-190_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5019
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.100; Positions  452536  447518.
XX
CC   Positions [2092-2598] - Reverse transcriptase
CC   Positions [3798-4139] - Integrase core
CC   'GCAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..1444
FT                 /product="Gypsy-190_AA-I_2p"
FT                 /translation="MESNNRSIDGMINDMSFSDFECGARQNRQTYVPMSKW
FT                 GIRYDNENGGLSVSDFMETVSRKAALFRFSDYEMYENFGELLGGNPLIWYR
FT                 AFKDRFVTWYALKHDFVKQFTKPDNDHLIERQLQSRLQLPGESFGIYYACM
FT                 ELLFKKLSTRKSEASKLEYLIRNLDDFYLNRIQEGQIRTTDDLVKFCEGFE
FT                 RSREILRRRRLSQYPLAEPSLHGRVQTPRLKVNEVRFDNMNDRFEVFPKSA
FT                 EHSEPSSSSFAQNFPSVSNLQPVYHPNCQSHESYPLRNSCANRSYCAAVHC
FT                 PGTIEHPNNAHAISQQRDFAYCSQHSEPMNNRAFQVQGHCQKETIEQSGNC
FT                 LQSFHPPRDKGYGFGSDEPHTQSESNPICVGNTDRSHHSQLINECAVIREF
FT                 SGNCFNCKMTGHHWRNCQQPKRFFCHRCGLEGKSMHSCPNCSGNREPGSRS
FT                 "
FT   CDS           1702..3822
FT                 /product="Gypsy-190_AA-I_1p"
FT                 /translation="MHCAYVPYTFKGKTQVVLTVLSEAVSNPLILGIDFWS
FT                 SFGISPTTVNEIEMFEPLTVPTVEPKNYSCTPEQQKILNEVVSEFQPYVEG
FT                 SLTRTKVIEHCIDTGKNEPIKQKFHPVSPYVLKEIDRELNRMLNLKVIQPS
FT                 SSPWSNPIVTVKKPDGSVRLCLDSRKLNAVTKKDAYPLPHIAGILSRFEGT
FT                 RYISKIDLKDAFWQIPLERNSCEKTAFTVPGRGLFEFVVMPFGLHNAPQTQ
FT                 CRLMDKVLGVDLQPYAFVYLDDVIIVTKTFSHHISILREIAKRLKTANLSI
FT                 NLKKSQFCAPSVKYLGYVIDSDGIRTDPDKIKAIVDYPPPSSVKEVRRLVG
FT                 LVNWYRRFIKDFSSIIAPVTDLLKQPKKKFVWTKQANDAFLKLKSALCSSP
FT                 LLTCPDYDLPFFVQCDASDVGIGAVLWQKHSDGEKVIAYMSQKLTNSERKY
FT                 SSSERECLAVLVAVERFRVYIDGVHFTVITDHESLKWLMNLKDPSGRLGRW
FT                 ALKLQGYDHSIIHRKGVHNVVPDALSRAINSVMAVTIDDKDRAWYNELFKL
FT                 VQEDPSEARDYQIRDGKLYRYQKANRGLIYNWKLVVNPDDRAEVLRQNHDD
FT                 VAHLGVTKTINRICENYFWRDMRKAITEYVRSCDVCKASKPVNVNARAPMG
FT                 NRKIAEYPFQVISMDFIGVLPRSKTGNTVLFVVSDWYSKFVFLHPMSKADT
FT                 IRMCGFL"
XX
SQ   Sequence 5019 BP; 1532 A; 948 C; 1110 G; 1429 T; 0 other;
     aagtggcgcc caacgtgggg ctcgatgctt ggaggttttg ttagatcttt tgaattgaaa        60
     tatttttcta agtgtttagg aatttagtca ttttatttaa ttgtgtgcaa tggagtctaa       120
     taatagatca atagatggta tgattaacga catgagtttt tccgattttg aatgtggtgc       180
     tcggcagaat cggcaaactt acgtgcctat gtcgaaatgg ggtattaggt acgataatga       240
     gaacggtggt ttaagcgttt cagatttcat ggaaacggta tcacgtaaag cagcattatt       300
     tcgcttttcg gactatgaga tgtatgaaaa tttcggagaa ttgctaggcg gaaatccact       360
     aatctggtat cgtgcgttca aggatcggtt cgtgacgtgg tacgctttaa aacatgattt       420
     cgtgaaacag ttcaccaaac ccgataacga tcatttaatc gagagacaat tgcagtcccg       480
     gctacaactg cctggggaga gttttggaat ttactacgct tgtatggaat tgctgttcaa       540
     aaagttgagc acaagaaaat ctgaagccag taaactagaa tatctaatta gaaatctcga       600
     tgacttctat ctgaatcgca tccaagaggg tcaaattaga acaactgacg atttagtaaa       660
     attttgtgag ggattcgagc gtagccgcga aattctgaga cgtagaagac taagccagta       720
     tccgttggca gaaccgtcat tgcatgggcg cgttcaaacc cccagattaa aagtaaacga       780
     agttaggttt gataatatga acgatcgttt cgaagttttt ccaaaaagtg cagagcattc       840
     tgaaccgagt agcagttctt ttgcacaaaa ttttccctcc gtgtcgaact tacaaccagt       900
     ttatcacccc aattgccaat cacacgagtc atacccattg cgtaatagct gtgcaaatag       960
     gtcgtattgt gcggctgtcc attgtcctgg tacaatagag catcctaaca atgcccatgc      1020
     tatctcacag cagcgggatt ttgcctattg ttcacagcat tcagagccga tgaacaatcg      1080
     agcttttcaa gttcaaggtc attgtcaaaa ggaaactata gaacagtcag gcaattgttt      1140
     gcaatctttt catccaccaa gagataaagg ttacggcttc ggctcagatg aaccacatac      1200
     acaaagtgag tcgaatccga tctgtgtagg taacaccgat agatcgcatc actcacaact      1260
     gataaatgag tgcgcggtga tcagagaatt ttcaggcaat tgttttaact gtaaaatgac      1320
     tggccatcat tggcgaaatt gccagcagcc gaagaggttc ttttgtcatc gatgcggctt      1380
     agaagggaaa tccatgcact cgtgcccgaa ctgttcggga aaccgcgaac ccggatcaag      1440
     atcgtagagg gaaaacttga ttccggacca ttcctcagtc tctctaatat agcaacatgt      1500
     gaaattgtat atcgaccaaa tgataatcgt cctttcgtga aaaaggacat ttttggaaag      1560
     ccattgatag gtttattgga ttccggtgct tcaatttcga tcctcggaaa aggttgttac      1620
     gcgattgcag agtagctaga acttagtctt tttaaaatta attcctcgat tgctacagca      1680
     gacggatcgg ttcatgaaat catgcactgt gcttatgttc cttacacgtt taaaggtaaa      1740
     actcaggtgg tgctaacggt tttatctgaa gctgtttcga atccgctgat tctcggaata      1800
     gatttttggt cgtcttttgg aatcagccct accactgtta acgaaatcga aatgtttgaa      1860
     cctttaactg tgcccacagt agaaccaaag aattattctt gcaccccaga gcaacagaaa      1920
     atccttaatg aagtagttag cgagtttcag ccctatgtgg aaggtagtct tacacgaaca      1980
     aaagtaatcg aacattgtat cgacacggga aaaaatgaac cgattaaaca gaagtttcat      2040
     ccggtctctc cgtacgtatt gaaagagata gatagagagt tgaacagaat gctgaatctc      2100
     aaagttattc aaccatcttc gagtccgtgg tcaaatccga tagtgactgt taaaaagccc      2160
     gacggtagcg ttcggttgtg tttagattcc cggaaactga acgcggtcac aaaaaaggac      2220
     gcgtatccgc tgccacacat tgcagggatt cttagtcggt ttgaaggcac tcggtacata      2280
     tcgaaaattg atttaaaaga cgcgttttgg caaatacccc tcgaacgtaa ttcgtgcgag      2340
     aaaacagcat tcacggtgcc agggcgaggt ctgtttgaat tcgtagttat gccatttggc      2400
     cttcataatg ctccgcaaac gcaatgccga ttaatggaca aagtcctcgg ggtagatctt      2460
     caaccgtatg cgttcgtgta ccttgatgac gtgataatcg tcacgaaaac attttcgcat      2520
     cacattagca ttcttcgcga aattgccaaa cgtttaaaaa ccgcaaattt gtctatcaat      2580
     ttaaagaaat ctcagttttg cgcgccatcc gtcaaatatc tcggttacgt gatcgatagt      2640
     gatgggatta gaacggatcc ggacaaaata aaagctatcg ttgactaccc gcctccctcc      2700
     tccgtgaaag aagttcgtcg tcttgtcggt cttgtaaatt ggtatcgtcg gttcattaaa      2760
     gatttttcgt cgataatcgc gccagtcaca gacctactca aacaacctaa aaagaaattt      2820
     gtgtggacga aacaagcaaa cgatgcattt ttgaaactca agagcgcact gtgttcctcc      2880
     cctctcctaa catgccctga ttacgatctt ccatttttcg ttcaatgcga cgcgtcggac      2940
     gtcggtatag gcgccgttct ctggcagaag cactcagatg gcgaaaaagt gattgcctat      3000
     atgagtcaga agctcaccaa ttcagagcgt aaatacagta gctcagagcg tgagtgccta      3060
     gccgtattgg ttgccgtgga gaggtttagg gtgtatatag acggcgtaca tttcactgtt      3120
     atcactgatc atgagtcgtt gaagtggttg atgaatctga aagatcccag cggccgactt      3180
     ggtaggtggg cgctcaagct tcagggatac gatcattcaa ttattcacag gaaaggagtg      3240
     cataatgtag tgccagatgc actttcgcgt gcgattaaca gtgtcatggc agttacgatc      3300
     gacgataagg acagggcttg gtataacgaa ctgttcaagt tagtccagga agacccctcg      3360
     gaagcgagag attatcagat acgtgacggt aaattgtatc ggtatcagaa agcaaatcga      3420
     ggattgatat acaattggaa gttagtagta aatccagatg atagagcgga ggttttgcgg      3480
     cagaatcacg acgatgttgc tcatttaggt gttacaaaaa cgataaatcg aatttgcgaa      3540
     aactatttct ggagagatat gcggaaagca atcactgaat atgttcgttc gtgtgacgtg      3600
     tgcaaggcaa gtaaaccagt caatgtgaat gcgcgcgcgc ctatgggaaa tcgaaaaatt      3660
     gcggagtatc cgtttcaagt aatttcaatg gattttatag gagttttgcc gagatctaaa      3720
     acagggaaca cagttctttt cgtggtgtcg gactggtatt caaaattcgt atttttgcat      3780
     cccatgagca aagctgatac gattcggatg tgtgggtttt tataaaagga gtatttttaa      3840
     aattcggagt accacaaacg gttatatctg ataacggtag tcagtttatt agccacgctt      3900
     ttaaaaaatt cctagaaaat tacggaataa accactttaa aaatgcagtc tatcatcctc      3960
     agaataatcc tgccgaacgt gtaaataagg tgatcatgtc ctcgattaga gcttatttag      4020
     gagaaaatgc ctctcacaag gagtgggaca aagaaattgc aaaaattgag catgcgatca      4080
     atacaagcgt acatgagtcc acaaaactgt ctccttattt tatagttttt ggacgaaacc      4140
     acattcgttt cggtaaaaat tacgaccggt atccgaatgc tagcgaagat aataatgttg      4200
     acgagttaca agaacggtta aaaacgttgg ataagatcaa agaaatcgta actagagaac      4260
     tcgccgccgc gcatgaacgt caaacccact attacaatac tcgaagcaaa aacctaacaa      4320
     ctttcaaagc tggtgatact gtgtggaaga aaaattttgc attgtcgaaa gcgtcggatt      4380
     ttttttcgtc gaaattagct ccgttatata ttcaatgtcg tgttgttcgt cgaacaggta      4440
     ataataccta tgatttagaa gatacggacg gtaaattttt aggaaattac tctatccaag      4500
     atatcagacc gttgtgatta gtatatgaat taatttatag cttatcaagt ctttgcaaat      4560
     tttgcggagc acacattttc ttttttttct cagtcttcgt ttgaatgtac ggagcattac      4620
     catttcttta aaagtcttcg gcataaagtc acggagcagc atatatatct ttgttacggt      4680
     aaacagagta gtctgatcac gaaaaagtct cttatatatg tattggagca tttgaattac      4740
     atcaaagtct tttccaaagg gaataagcac cacaaaatag aatgatttaa gtttctagat      4800
     ttaaaagggt attttgagat gaagaagatt tcaggacccg gaagcataag gcaacaagcc      4860
     atttgtttca aatctcttag tggagcattt agccggtagc gaataaacta agaagtatat      4920
     atatatattt gaaaaaaaaa aataaaattt tgccgttgtt tgaagttacc ttttttatga      4980
     gcaaaatttc attttttttt tcgcggagaa aaggggtag                             5019
//
ID   Gypsy-190_AA-LTR repbase;    DNA;    INV; 1223 BP.
XX
AC   supercont1.100;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-190_AA_;
KW   Gypsy-190_AA-I; Gypsy-190_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1223
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.100; Positions  447517  446295.
XX
SQ   Sequence 1223 BP; 374 A; 255 C; 260 G; 334 T; 0 other;
     tgtagcgagc caattagagc tcagggaaaa aaaataataa tttgaccaat cagagttcaa        60
     ttccctctaa aaaccaacag ccaatcaaat ttgtttggat gagagagata gcaaattaga       120
     agcccccgcg caactatata agttggggca aacacgcgcc catcatcagt tttaatttat       180
     cagttggacc gaaaagtaaa aagcagagtg agctctcctc tcctatccca accacagcct       240
     gcaaacctag gagcaaagcc ccatcgagga agccagatag tcgtacctac gacggcgtga       300
     agcacgaggt agccacgatc cagtccgtgc tagcacctaa caagctgttt agcttctgtc       360
     ccgacctttg ttcaaaggtg cgcgggtttc cgaaacatca aaaaagggct ttggctgctc       420
     cagaggtttt gcacggtaaa ataaaccgca attttcattg cgattcccca atctgcgttt       480
     ctaaatgcaa cgaaacaaat atttaaagag ttgttttccc ttccctagtg aaactccttt       540
     gcaactgtgt ccaacaagtt tcaattgtac ctaaattgtg tgtgattagc ggtaaaaccg       600
     atgtaagcag tgatcatgta gttaattgcc aatcatgtaa gtgatcaagt gctcatcctc       660
     tcaacagcgc catccacggt ggtcggtttt ttttggaggc gcaccctagc cgccttcagt       720
     tgaggttctc agccgtgatc caccagcatg atccagacct cttcggggga tctctgtggc       780
     tgaagccgaa gaaaatgtgt gcacacaaac cagaaaactg atgaacttta gttttgcgcg       840
     tgagttagta tgtaagcaga aaactagggt aagtcaaaaa tgaaaaaaaa aaaaatctct       900
     agtacggccg ttatgaagaa gtgtagaagt aaaattttca aattgatttg attggtttta       960
     ttagtaaatt gtattgaaat gattagtagt gttttttaat attgaatttt gattgatttt      1020
     cctattgaaa ttctgtgcgt tcccacgact tgccgcagag ctgaaaccgg gcaacctttt      1080
     gaaaaagtgg agttttgcat caggtcacgg cctgattggc gcttaagcaa aactttaagc      1140
     aacggaatca atcagcattc gcgtcgaaat tagtttattt aaaatttgag tttttgtgtg      1200
     atccaccaag cgaaaacgtt aca                                              1223
//
ID   Gypsy-191_AA-I repbase;    DNA;    INV; 3908 BP.
XX
AC   supercont1.102;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-191_AA_;
KW   Gypsy-191_AA-LTR; Gypsy-191_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3908
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.102; Positions 1414743 1418650.
XX
CC   'CTGAC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..1940
FT                 /product="Gypsy-191_AA-I_2p"
FT                 /translation="MTPEDINAYMQSQKAMFDVMLRQMQQMNAAPAAAARA
FT                 PAFVPLPPPLSVEGDMEQNFDFFIANWEHYGKNVEIDKWPAEDNERKVSLL
FT                 MSVIGQAALKKYSNFELSAEEKADLTLAVAAIKAKVVIERNVNIDRLEFFE
FT                 AQQHSAESIEDFVLRLKHLARLAKLCNLSAELVTFKIITANRWPHLRQKML
FT                 TKTNITEAVTFCRNQEIGEARAEQSKGEVHKLKSSSSKLPRYKFCSDRHQF
FT                 TKGTCPAWGKRCKKCGRKNHFERFCKEENEKKKKKKSVKVVKNCESELSSC
FT                 SSAEESECEDNSSEEEVEIRKIYDHSGSGGRVLAELDLKLNGKWKSVQCEV
FT                 DTGADTNIIGLKFLAEMAEGNQHEITPSKYRLQSFGGNPIQVLGETRISCK
FT                 RNGKRYKLVFQVVKVDHIPLLSANASKTLGFVKFCNAVTFSPAEPSWSDLL
FT                 TVYRVSALEIINKHKSVFEGYGRFPGVVSLEVNDSVPPRIQPPRRVPVALR
FT                 AALKEELENLERDGIITKEPRHTEWVSNIVLFKRGHDKSAPLRICLDPIQL
FT                 NQALKRPNLQFVTVDEILPALGKAKAQTDTVCG"
XX
SQ   Sequence 3908 BP; 1161 A; 869 C; 970 G; 908 T; 0 other;
     tggtgtcaga agtgtcgtag ctattttccg gcgtcattga taaatcgcgg aaaagtttgt        60
     cgaggaaacg tcggtttcga agcggtatgg catcatattc gcggaattag tgtccgtttc       120
     cgagcggttt ttttatatcg cgaaatcaga aagtgctcgt tttttccggc ttcgatccca       180
     agattttccc gttaccaaaa atgactccag aggacattaa cgcctacatg caaagccaga       240
     aggcaatgtt cgatgtgatg ctgcgacaaa tgcagcaaat gaacgctgcc ccggcggccg       300
     cagccagagc gccagcgttt gttccccttc cgccaccgtt atcagtggaa ggtgacatgg       360
     aacaaaattt cgattttttt atcgccaact gggagcatta cggcaaaaat gttgaaatag       420
     ataagtggcc ggccgaggat aacgagagaa aagtaagttt actcatgtcg gtaattggcc       480
     aagccgcttt gaagaaatac agcaatttcg agctgtccgc tgaggaaaag gcagatttaa       540
     cgttggcagt cgcagcaatc aaagcaaaag tcgtcatcga aagaaacgta aatatcgacc       600
     ggcttgagtt tttcgaggca cagcagcact cggcggagtc catcgaggat ttcgtgctcc       660
     gactaaagca cctggcgcga ctagcaaagt tgtgtaatct ttcagcagaa ttggtaacgt       720
     tcaaaattat taccgcaaat cgttggccgc atcttcgtca gaaaatgttg accaagacta       780
     atatcacgga agcggttaca ttctgtcgga atcaagagat cggagaagcc cgagctgaac       840
     aatcgaaagg agaagtgcac aaattgaagt cgtcgtcgtc aaaacttccc cgctataaat       900
     tctgtagtga ccgtcatcag ttcacgaaag gcacatgtcc agcgtggggc aagcggtgca       960
     agaaatgcgg aagaaagaat cactttgagc gtttctgcaa ggaagagaat gagaagaaga      1020
     aaaagaagaa atcagtgaaa gtggtgaaga actgtgaatc agagctgtcc agctgttcgt      1080
     cagcagaaga aagtgaatgt gaggacaaca gtagtgagga agaagtagaa atccggaaga      1140
     tctatgacca ctccggatca ggaggaagag tgttagcaga attggatctg aaactcaacg      1200
     ggaaatggaa gtctgtgcag tgtgaagtag acacaggagc ggataccaac atcatcggtc      1260
     tcaagtttct agcagaaatg gccgaaggaa accaacacga gatcactcct tctaaatatc      1320
     gtttgcagag cttcgggggg aaccctatcc aagttctggg cgagacgcgg atcagctgta      1380
     aacgcaacgg aaaacgatac aagttggtgt tccaggtagt caaagtggac catatccctc      1440
     tgctgtcggc aaacgcaagc aagacacttg gatttgtaaa gttctgtaat gcagtcacat      1500
     tttcaccggc tgaaccatct tggtccgatt tgctcaccgt gtatcgggta agtgctttgg      1560
     aaataatcaa caaacataaa tccgtctttg aaggctatgg tcggtttccg ggcgtagtgt      1620
     ctctagaggt taacgattcc gtacccccac gcatacaacc accgcggcgg gtccccgttg      1680
     cattacgtgc agcactgaag gaggagttag aaaacctaga gcgagatgga ataataacaa      1740
     aagaacccag gcacaccgag tgggtgagta acatagtcct attcaagcga ggacatgaca      1800
     aatctgctcc attgagaatc tgcttggatc caatccaact aaatcaagca ctgaagcgac      1860
     ccaacttaca gtttgtgact gtcgacgaaa tcttaccggc gctcggtaaa gctaaagcac      1920
     agacagacac agtctgtggc taaagtgttt acaacagttg atgccagaaa aggattctgg      1980
     catgtggttc ttagtgagga aagcagtcgt ctcactacat tctggacacc gtacggaaga      2040
     ttccgttgga ccagacttcc attcgggatt agtcccgcac cggagatctt ccaaatgaag      2100
     ctgcaggagg tattacaggg attgaatgga gtggagtgta ttgcggacga tatactagtg      2160
     ttcggctgcg gagacacctt gcaagaagct ctcgtcgatc acaaccagtg tttggataac      2220
     cttcttgttc ggctggagga aaatgaagtg aagttgaatc ggagcaaact gaagttgtgc      2280
     caaagtgcgg tgaaattcta tggacatgtg atgaccgacc agggactaaa acctgacaag      2340
     tcaaaggtgg aaacattcaa aaactatcca gtgccaaaaa accgcaagga acttcatagg      2400
     tttatcggta tggtgaatta tttgtgccga ttcctgccga atttgagtga aaatttcagt      2460
     gtgctccgaa agttgatttc cgagaaagaa ccgtggattt ggtcatcgga ccaacaagaa      2520
     gaattggacc gagtgaaaag tctagtgtca gatgcgaaaa cattgcggta ttacgatccc      2580
     aacgaaccgt tggtagtgga gtgtgacgca agttgtttcg gattgggcgt cgcggtgttt      2640
     caacgtaacg gtgtgattgg ttacgcgtcg cgaacactaa ccgctactga aagaaactac      2700
     gcgcaaattg aaaaagaact aatcgcgatt ctctttgcgt gtgtgaagtt tgatcagatc      2760
     attgtcggta atccgatagt caccgtaaaa acggatcaaa agccgctagt aaatgttttc      2820
     cgaaagcccc tgttgtcagc tcctcgtaaa ttgcaacaca ggcaaggaca atgtggtcgc      2880
     ggacgcaatt tcacgtgccc ggctggtgga atgtccagaa gaagattgtt tccgtaaagc      2940
     gactatatgc gaagtgttcc ggaaggtcga agtggttcag ctttcgtcgt ttctgagtat      3000
     ctcggaagac atcatccagc agattgtcca ggaaacgacc aaggattcaa cgctccaaac      3060
     tatcgtgtcc tacgttcgtt ccggctggcc tcgatcagta tcgaaagtac aggaaggtgt      3120
     aaaagtcttt ttaagtaccg gaatgaactg tcagttcagg atggaatgtt gttccgtcac      3180
     gaccagattg ttattccgta ttctctccgc aagaagataa cggacaaggc acacgtaggt      3240
     cacaacggag tggagtcaac gctaaaacta gctcgagcaa acgtattttg gccgggcatg      3300
     agcgcgcaaa ttcgagaaac cgttaaggaa tgctctgttt gcgccaaata tgcttcatca      3360
     caatcaccag caccgatgca gacacacccg atccctgttc atccctttcc gggctatcag      3420
     ctcaacccgg atacctgtaa ggaatggaca ccagcagtag ttatccagcg ccaaagcgac      3480
     agatcctgcg tcattgacgt agagggcgct aactatcgac gtgaccgtag tcacctgaag      3540
     ctacgtaatg taccacaaac gccattgaaa tctccctcaa ttactgaacc acccgagcca      3600
     ccaacatcaa aaaagctacc tgttgcattt caactaccat tgcaacgcca gcgatggcca      3660
     acaccacaca gcatcaacgg acaccgatgg tcaacactcc tgtcagcgag gtcccgaata      3720
     tgttagagca aacaacgaga aacactaccc cgattcctcc agaatcggat tcttcagctg      3780
     tcgccagtgg ttctcaactg atcacacctc ggcgtccaag aagagatatc aaagtgacag      3840
     ctaaatttaa agattatctt ctaaattttg attaaactgt cttatcttta attttgcgaa      3900
     agagaagg                                                               3908
//
ID   Gypsy-191_AA-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   supercont1.102;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-191_AA_;
KW   Gypsy-191_AA-I; Gypsy-191_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.102; Positions 1414607 1414742.
XX
SQ   Sequence 136 BP; 43 A; 33 C; 16 G; 44 T; 0 other;
     tgttgcggtg tttactataa tgtccctctt caatattcca actatacacc cctgtgcatt        60
     ctcaaaacgt caaaagacat cgttgtaaca ttaagttaat aatgctacct tctgaaataa       120
     acacgtctct tcaaca                                                       136
//
ID   Gypsy-192_AA-I repbase;    DNA;    INV; 5745 BP.
XX
AC   supercont1.65;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-192_AA_;
KW   Gypsy-192_AA-LTR; Gypsy-192_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5745
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.65; Positions 2820290 2826034.
XX
CC   'GGACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1644..3332,3336..5729)
FT                 /product="Gypsy-192_AA-I_1p"
FT                 /translation="MESARRVRSFEILADRSRLPVEWQKWKRELERYFDAC
FT                 GISSQWEKRSQMLHLAGPDLQEIFDHLPGVEEVPLVVRDPPYYDVAVRKLD
FT                 EHFEPMRRRNYERHLFRQIEQKPDERFADFVLRLRIQAKRCEFDRFDKRET
FT                 EDRLIEQIVETCRSKDLRRHILAKDMTLDEIVTLGTTLADVQQQMNELDRS
FT                 HGEIKHQLDVVNRVIRRPQLSKPKFQSEFRSTNSTKWTNRSCFACGRKGHL
FT                 KGDNICKAKNAKCLKCGELGHFMNRCLKRTAGSDNATSRTKRIRLIEEVEP
FT                 ENQKEEAIFYAMGKNTFDFVIGGVKIAMVIDSGADANIIEEATWEQAKAAG
FT                 IKTTGISSVVDRKLMAYATKLPMQINCMFWAEIKAGDNKTLTKFYVVQNGQ
FT                 QNLLGHATAKELKVLKVGFDVASVTERPAIFPKIKGIVVEIPIDRKVQPVR
FT                 QSYRRAPFALEEKIHDKLEYLLDRDIIEKVNEPSAWVSPVVPILKESGEIR
FT                 LCVDIRRANQAVLRESHPLPVIEELLAGVDGAVKFSKLDVKDAYHQLEISE
FT                 DSRVITTFITKYGLFRSFVISKTLLTLWKINDHSNLWNFVFKLRYKRLMFG
FT                 ISCAPEAFQKVMDTLVAGLEGVIVYLDDAMVWGSTQAQHDFRLKCLLERFK
FT                 EYNVLLNEDKCLYNVDELEFLGHYLSAAGVKPTESRVRAVEQFRRPGNTAE
FT                 LRSFLGLITYVGRFIPHLASKTDSLRALLKKENKFQWTSAQQQAFEDIKHA
FT                 VSNISHLGFFNPKNKTVLIADASPYGLGAVLMQEDANKQGRIIAYASKSLS
FT                 DLERKYFQTEREALALVWAVDRFKLYLQGIKFDLVTDCKPLQFLFSPRSKP
FT                 CARLERWIMRLQSYSYRIVYQPGPMNVADALSRLPVAQEVVGTFDPENENF
FT                 VRMLAITSAPVAITLQEIQEESSRDEQIQDVIKALEHGVWTENAKPFKAYE
FT                 TELCASSEVLLRGERIIIPEKMRRRTLELAHEGHPGMVVMKRRLRQKVWWP
FT                 GLDAEVEKFVKTCRDCTLVSNAFAPEPLIRTAMPEKPWVHIAVDFMGPLPS
FT                 GHNLLVIVDYYSRFVEVIVMKEISAKSTILALHETFCRYGIPVTMKSDNGP
FT                 QFVSEAVQEFCREYGIEHRKTTPYWPQANGEVERANRALKKRLQISQTSKS
FT                 DWRWDLRMYLLMYNSTPHSTTGVAPSALMFGRVLRDKLPGFPSAGMKSIEE
FT                 VLDRDRQKKLKEAEYANIKRKAKPNPLREGEIVVAKRICKENKLASNFNPE
FT                 ELIVVGRSGPDVTLKSKETGKIFHRNVSHLKPIVPRNQGTIDNAVPHKVNK
FT                 NETEARQEQEPKHDNAVQNQVSKSMDRPRRETKRPDYLDDYLVRAVQDR"
XX
SQ   Sequence 5745 BP; 1847 A; 1010 C; 1473 G; 1415 T; 0 other;
     gtttttgtcg acgaggtgaa aagtttgata aagtgattca gtaccgaaat tctttaacca        60
     ttccaaaaaa gtggaaaaaa gtaaaaaaag aaggtgagtg ttattaaatc aaaagaaaag       120
     atcttgaatt cctcgtgaag ataagtgtac cacgatgagg aaagtgagat gatggtggat       180
     gcattcgagc catgaaatta ttgaaaaaaa atatgaagcg gaagaaaata atctatctac       240
     agaaatagct aattactgtg aatgtgaaaa cgttcgaaat tggatttaga attgtctgaa       300
     cacagtggcg tgaaaaaaaa tatggcgtca cgcacgagag atttaagctg agcttgccgt       360
     gagtatgtat gagtgagagg tgaattattg aaatgaatat ccgacgcggc tcggtttctg       420
     tgtgaaggcg aaagagcagt gcgacgttag acttcgttat atactcattg gattggtggc       480
     tatgggcttc gcagttatgt tttattgaga aaattcgatg gtgggcgaaa aaaaagagtt       540
     gaaccattcg gttggcaaag gggtgtctat ggatgttcgt aacagagtga aaaaaaaaaa       600
     attgaaaggc ttaaaaggaa atatcatgtg cgatgtgatt ttggattggc aactgggtgc       660
     cgatagcgtt tcacaactat gtgtgagata gagaaaagca gcagaatgct agagcaagag       720
     gtgttatgta cattgatact ctggttggca actgggtgcc gatagagttt cacaactgtg       780
     tgtgatagag agaaagcagc agagtgctag agaaaaaggc gttatgtaca tggatacttc       840
     ggttcggcaa ctgggtgccg attgtggctc acaactgtgt gtgatagaga gaaaagcaac       900
     agagtgctag aggaagaggt atcatgtacg ttaatatttc gaatggcaac tgtgtgccga       960
     taggctgtcg caactgtgtg cgtagaagat aaagcaactg ggtgctattg gaaataacgc      1020
     aggagctaaa aacgtggtgg gtctgaggac tctcagcttt ctgcgtatag gtttctacat      1080
     ggacacgtga tggttacgtc acattaacgg tgagctgcag ttatgttata gttgttactc      1140
     agaggtttgg tgcacataga actataccag tgacgaagca ggggagtaag tgagagttgt      1200
     aaaaaagggt acgcattagt gtggaaacgt attggtttat gagcattagt aagtacaatg      1260
     tttacaaagg tatgaaaggc aaaagtaaat aagaaaaatg tcgttatcat ggtggatttt      1320
     aatggatttc gagaaattga tgtggaaaat gagataatac tggttaatga tcgattatca      1380
     cggaggtgtt cagactctca gtttggcaga atcttaaggt aggtaataat aacaaaagaa      1440
     aaatactgga aattatgttg agtagttcaa aacatgcatg tgaactattc ggggtcaata      1500
     agtatgtatt tgggaatgtg tattatggga aggaatagaa ataataataa taataaaatg      1560
     catccattca tccatccacg agatcttcat tattttaaat agtagaaacg aaaattaaaa      1620
     aaagaaaatt gaaattcttt aggatggaat cagcaagacg cgtgcgatcg tttgagatac      1680
     tagcagatag atctcggcta ccggtagaat ggcagaaatg gaaacgcgag ttggaacgtt      1740
     actttgatgc ttgcggaata tcatctcagt gggagaaaag atcccaaatg ttacatttgg      1800
     ctggcccaga tcttcaagag attttcgacc atttgccggg ggttgaagaa gttccactcg      1860
     tagtacgtga tcctccttac tacgatgttg cggttcgaaa actcgatgaa catttcgagc      1920
     ccatgcgtcg tcgaaattat gagcgacact tgttccgtca aattgaacag aaacctgacg      1980
     aaagatttgc tgattttgtt ttgaggctca gaatacaggc aaaacgttgc gaattcgatc      2040
     gttttgataa gcgagaaaca gaagacagat tgattgaaca aattgtggag acttgcagat      2100
     caaaagatct acgccgacac attctggcaa aagacatgac tctggacgaa atagtaacac      2160
     tggggaccac tttggccgat gtccaacagc aaatgaatga actggatcgt tcacatggcg      2220
     aaataaaaca tcagttggat gttgtgaatc gggtgattcg gcgtccgcag ttgtcaaagc      2280
     ccaaatttca gtccgagttc cgatctacaa attcgacgaa atggaccaac agatcttgct      2340
     ttgcttgtgg aaggaagggt catttgaaag gtgataacat ctgcaaagcc aagaatgcta      2400
     agtgcctcaa atgtggcgaa ctggggcact ttatgaaccg ttgtttgaaa cgcaccgccg      2460
     gaagcgataa cgcaacttcg agaacaaagc ggattagact tattgaagag gttgagccag      2520
     agaaccagaa agaagaagcc attttctacg ctatggggaa aaataccttc gatttcgtta      2580
     taggaggagt caaaattgcg atggtcattg actcaggtgc cgacgccaat ataattgaag      2640
     aggcaacctg ggagcaggca aaagcggcgg gcataaaaac aacaggaata tcgtcggttg      2700
     tagatcggaa gctaatggcg tatgctacca aactgcccat gcaaataaat tgtatgttct      2760
     gggcagagat taaggctggc gacaacaaga ctttgacgaa attctatgtg gttcaaaatg      2820
     gtcaacaaaa cttactggga catgcaacag ccaaggaact gaaagtttta aaagtgggat      2880
     tcgatgtagc atcagtgaca gagaggccgg caatctttcc gaagatcaaa ggaatagtgg      2940
     tagaaattcc gatcgaccga aaggttcagc cagttcgcca atcgtatcgc cgtgcaccat      3000
     tcgctcttga ggagaaaata cacgacaagc tagaatactt gctagacagg gacattatcg      3060
     agaaagtaaa cgagccttct gcgtgggtct ccccggtagt accgattctt aaggagtctg      3120
     gggagataag gctttgcgta gatatacgtc gtgccaacca agcggtactc cgggaatcac      3180
     acccacttcc ggttattgag gagctattgg ctggtgtgga tggcgcagtt aagttttcaa      3240
     aactcgatgt aaaggacgca taccaccaac ttgaaatatc agaggattct cgcgtgatca      3300
     caacattcat aacgaaatat ggattgttca ggtaaagctt cgtaatttct aaaacccttt      3360
     taaccttatg gaaaataaac gatcactcta acttgtggaa ttttgttttc aaactcagat      3420
     ataaacggct gatgttcggc atcagttgtg cgccagaggc cttccagaaa gttatggata      3480
     cactagtagc ggggttagaa ggggttatag tgtacctcga tgacgcaatg gtttggggaa      3540
     gtactcaagc acagcacgat tttcgtctta agtgtctctt agaacgtttc aaagaatata      3600
     acgtgctgct aaatgaggac aagtgcctgt ataacgtgga tgagttggaa tttctaggtc      3660
     actacttgtc ggctgcagga gtaaaaccaa cagaaagtcg ggttagggca gtagaacaat      3720
     tccgccggcc tggaaatacc gctgagctga gaagtttcct gggactcatt acctatgtag      3780
     ggagattcat acctcatcta gcatcaaaaa cagattcgtt gcgggcgttg ctaaagaagg      3840
     aaaataaatt tcagtggact tcggctcaac aacaggcatt tgaagacatt aagcatgccg      3900
     tgtcaaacat cagccatttg ggatttttca atcctaaaaa caaaactgtc ttgatagcgg      3960
     atgcaagtcc atatggtcta ggagcagttt tgatgcaaga ggatgcaaac aaacaaggac      4020
     gaatcattgc ttatgccagc aagtcgttat cagaccttga acggaaatat ttccagaccg      4080
     aaagggaggc tctagcgttg gtttgggcgg ttgatcgttt taagctgtat ctgcaaggta      4140
     tcaaatttga tttagtcacc gattgcaaac cgctacaatt cctgttcagt cccagatcga      4200
     aaccgtgcgc cagactagaa cggtggataa tgcgtttgca atcatattca tataggattg      4260
     tttatcaacc aggaccgatg aatgtagctg acgcactatc gaggctgccg gtagcgcaag      4320
     aggtagtagg aacctttgat cctgaaaatg aaaatttcgt tcgaatgcta gctattacgt      4380
     cagcaccggt ggctatcacg ctacaggaaa ttcaggaaga atcaagcaga gatgagcaga      4440
     tccaggatgt tataaaagca ctagagcacg gagtatggac agaaaacgcc aaacctttca      4500
     aggcatatga aaccgaacta tgtgcttcat cagaagtact gttacgagga gagaggataa      4560
     tcattccgga gaagatgcgc cgtagaacgc tggagctcgc acatgaaggg catccgggca      4620
     tggtggtcat gaagagacgt ctacggcaaa aggtctggtg gccaggtttg gatgctgaag      4680
     tcgaaaaatt tgtcaaaact tgcagagatt gtactttggt atcgaatgcc tttgcgccgg      4740
     aaccattaat tcgtacagcg atgccggaaa agccctgggt gcatatagct gtagatttta      4800
     tgggtccatt gccttcaggc cataacttgt tggttatagt ggattattat agccgttttg      4860
     ttgaggtcat tgtaatgaaa gagatttctg caaaaagtac tattctagca ttacatgaga      4920
     cgttctgccg atatggaatt ccggtgacga tgaaatctga caatgggcct cagttcgtaa      4980
     gcgaagcagt acaagagttc tgtagggaat atggcatcga acatcggaaa acaactcctt      5040
     attggccaca ggccaatgga gaggtggaaa gagcaaacag agcgctcaag aaacgtctgc      5100
     agataagcca aacatcaaag tctgactgga ggtgggattt acgaatgtat ttgttaatgt      5160
     ataactcaac cccacattcg actactggag tagccccgtc agcgcttatg ttcggaagag      5220
     tccttagaga caagctgccg ggatttccat cagcgggcat gaagtcgata gaagaagttc      5280
     ttgacagaga tcgccagaag aaattgaaag aagcagagta cgcgaacatc aaacgtaaag      5340
     ctaagccgaa tcctctgagg gaaggagaga tagtcgtggc aaagagaata tgtaaggaaa      5400
     ataagttggc gtcaaacttc aacccggaag aacttattgt ggttggaaga tcaggaccag      5460
     acgtcacact gaagtcgaag gaaacgggaa aaatcttcca tagaaatgtc agccacttga      5520
     agccgatagt tccgcgtaat caaggcacca tagataacgc agtgccgcac aaggtcaaca      5580
     aaaatgaaac agaagcgcga caagagcagg agccgaagca tgataacgca gtccaaaatc      5640
     aagtatcaaa aagtatggat cgccctcgcc gagagacgaa gagaccggac tacctggatg      5700
     actatcttgt gcgtgcagta caagaccgtt gaggaagggt ggaga                      5745
//
ID   Gypsy-192_AA-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   supercont1.65;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-192_AA_;
KW   Gypsy-192_AA-I; Gypsy-192_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-171
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.65; Positions 2820119 2820289.
XX
SQ   Sequence 171 BP; 62 A; 30 C; 39 G; 40 T; 0 other;
     tgtagtgtcg gggttaactg ggttatgtat tagtattcat cactacaaga caacacaaat        60
     acacccaagg gaaaggtatg ctaaacaaag agaataaagt aaggagaact agagttgagt       120
     agactaccga tcgaagcaca cgtgttttct ttgcgagcaa ccgatatcac a                171
//
ID   Gypsy-193_AA-I repbase;    DNA;    INV; 5221 BP.
XX
AC   supercont1.84;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-193_AA_;
KW   Gypsy-193_AA-LTR; Gypsy-193_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5221
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.84; Positions   83875   89095.
XX
CC   Positions [2915-3448] - Reverse transcriptase
CC   Positions [4195-4566] - Integrase core
CC   'TTAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1224..2204
FT                 /product="Gypsy-193_AA-I_3p"
FT                 /translation="MFTIFFQMDYDKNCSLGPFNDTVDASDLRREWEEWLR
FT                 AFELFLELKQIDSQHERLVLMLTRGGRGLQRIYYNLRPVFGEIHPEPVRVP
FT                 LAPQETPEYDNAIKRLNHFFVGKCNERVELEVFRSLTQSSGESFNHFILKL
FT                 RTQAARCDFGDREEKEILQQVTMGALDDRVKDKGLENMMDLDELTNYAINR
FT                 EILMKQKQKLHPFKVEAESAGVSAVKQVWERKPQFKARTFGKPWNEGSRAR
FT                 LECDRCGSWKHQKDSQSCIARNSRCNNCGRTGHFARKCKAIRKMQIKARST
FT                 WKRAGGEANALQDGDRDDVMQQRRNPVLEDSMKVE"
FT   CDS           2405..4210
FT                 /product="Gypsy-193_AA-I_2p"
FT                 /translation="MNSRNDGIITCKIDQQPVDFLIDSGAAINTVTQQVWE
FT                 ELINSKANLFKKRFHCDRKFLAFATQEPLRVLTIFEAWISVNESKPKSYAE
FT                 FFVIEGSRKSLLSKRTAEDLRVLKVGLEVQTIEVKNDAFPKFPNVQVKLSI
FT                 DSSVQPRKIAYLRIPAAMEEKVDQKLLEMLKSDVIEPVVGPPEWISPMVVV
FT                 PKGKDDIRLCINMKYPNEAIQREHYPLPMIDTFLNKLRGSTIFSKLDITSA
FT                 FYHIELHPESRGITTFMTSRGLMRFKRLMFGINCAPEIFQRVMSGMLAGIE
FT                 GVVVYIDDVVVAGRTKEEHDARLQEVLAVLKENNAILNKDKCLIGVSELEI
FT                 LGFKVSAAGICPSDEKVSAIQNFRRPETKEEARSFLGLVNFVGQFIPHLST
FT                 RSEPLRQFIRGDVENFGESQQRAFDDLRNALSNTVRRLGFFDPKDKTELYV
FT                 DASSVGLGAVLTQRNSDQAPRIICFASKGLTKTERVYPQTQREALAVVWAV
FT                 EKFYPYLFGTHFTIFTDHKTLEYIYEEKHQQGKRACSRAEGWALRLQPYDF
FT                 HVKHIPGSTNISDALSRLSAQFDTASDTPFDEATEHYLCAVGEGPTAISVQ
FT                 VGFW"
FT   CDS           4219..5139
FT                 /product="Gypsy-193_AA-I_1p"
FT                 /translation="MKGTTAAKTIEALESIFQEQTYPETIRSDNGPPFSSE
FT                 EFSDYCSSKNIRLIRTIPYWPQMNGLVERQNQGILRTLRIAKAINTDWRKA
FT                 IRDYVYAYNTTPHSITGKSPMELMTGRPVKDLLPSLRTEPSWRRDEETKDK
FT                 DAIKKMQGKLYADQRRHARPSEIDVGDEVMLKNYETGKLEPKFRLDKFTVI
FT                 KKSGNDVIVTNEEGVMYRRPVSHLRKWPSGEGTESSQEASKNHQPHNSKVP
FT                 EPFLVTNDSTMEKQPKSNSFKIHSPPEPPAMKGNSSTKKGLQEQSEGSSTA
FT                 KRPKRHKKLPSRYSS"
XX
SQ   Sequence 5221 BP; 1630 A; 1033 C; 1262 G; 1296 T; 0 other;
     atttggcgca gccgaacgga ttgaataagg tgagttgatt taagaaagga atcccggaaa        60
     acattttttt gcgttctgaa gtgagtgcat cgaggccatt tgcaaacgat tggaaaagag       120
     ctagagagaa agaatgtgtg cgtttttttc cttcctgatc tgcctgaaga gaagtgataa       180
     ttatgctact ttattcgtgc aactgtacaa gttttgaaag tgcaaatttg aatcgcgtcg       240
     aagaattaga caatcgtgaa gggaggattg aaaagtgaac acaaaatgga ggaaccaata       300
     attgaggatt agaagcactc acacacacgc cagccgagaa aagtgagaga aaaaaaacat       360
     accaaaaaga tgcgagacca gttaaatact gaagcgcaca caaacacgaa gatgatagac       420
     ggacgaaaga atcacacttt gaaaagatgc gagaccggta gaggccgtag cgcacaaaac       480
     gtatgaagaa ttgcggccgg ttgatgaccg agcacacaca cacacaaaaa gatgcgagac       540
     cggctgaaga ccgaagcgca cacatggacg aaagaaagag gcaaaaaaaa tatgtacatg       600
     tttgctgatg tggaaatgaa acatgtggaa ggcagaagac agggttgttc ccgaattttc       660
     ttgatgtaaa tattggttta gattaaagtc atcctaataa atactgtgat cagtggtaaa       720
     aagtttagca aaagttgtac gctatttagg atacatacaa aagcaaaata gatgataatg       780
     atgcagtttc agatttaagt gaatattgag gtaattcaaa aactaacgct gaattcgtaa       840
     aaaaatctga ccagttcgct gcttactaca cttttcataa tgtgtacagg gctgttacac       900
     tgatttcgca atctcattgg accttgttgc aaattttgcg gatcgattgt atttatttcg       960
     taacagccct atgcatggca tgttagatgt cgcaagacag tagggttttg catgtgaact      1020
     ttgaaatcag cagtgatcat tatagaagta acagaaagtg tattttgtgt ggcagaagat      1080
     aactaattgt cgtgtttttt ttgtggaagt ggtccatatt ttgcttcttt tcaagaactg      1140
     tttactttca cgtattgaga ccgatttttc atgctgagtt cgacgatgtg aacataaaac      1200
     gtcatgctca ctaaccaaac aaaatgttca caattttttt tcagatggac tacgataaaa      1260
     attgctcact ggggccgttc aacgatacag ttgatgcttc agatctccgt agagagtggg      1320
     aagagtggct aagagccttt gaactttttc tggagctgaa acagattgac tcgcagcatg      1380
     agagactggt tctcatgctt actcgtggtg gtcgaggcct gcagaggatc tactataacc      1440
     tgaggccagt gttcggagag atacatccgg aaccggtaag agtaccgcta gcaccacaag      1500
     agacgcccga atacgataac gccatcaaac gactgaatca ctttttcgtg ggaaagtgca      1560
     acgagcgggt tgagctcgaa gtctttcggt cactaacaca gtcttccggt gagtcgttta      1620
     atcacttcat cctcaagctt cgcacgcagg ccgcccggtg tgacttcggc gaccgcgagg      1680
     agaaggaaat tttgcaacaa gtaacgatgg gcgctctgga tgacagagtc aaggacaagg      1740
     gtcttgagaa tatgatggac ctcgatgagc tgacgaacta tgccatcaat cgagaaatct      1800
     tgatgaagca aaagcagaaa ttacacccgt tcaaggtcga ggctgaatca gctggcgtat      1860
     cggcggtaaa gcaggtttgg gagaggaagc cacaattcaa agcgcgaact tttggaaaac      1920
     catggaatga aggtagccgt gccagattgg agtgtgatcg ttgcggttct tggaaacacc      1980
     agaaggactc gcaaagttgc atagctagga actcacgatg caacaattgc ggccgcactg      2040
     gtcacttcgc cagaaagtgt aaggcgatac ggaaaatgca gatcaaagcc cgtagcactt      2100
     ggaagcgtgc cggcggtgaa gctaatgctt tgcaagatgg agatcgagat gacgtcatgc      2160
     aacaacggcg caacccagta ttggaagatt cgatgaaggt agaataattt tgtctttatt      2220
     tctattttac tttatgacat gaattcgtgg agcattgagc tcagggtttt attttaacca      2280
     ttcttatctg ataaacttat ttgagggatt gtagtgtctc gcacgtccta gtacatgata      2340
     acattgaaat gataataaac aaaattaaaa taaatttggt ctggaatcta tctcgtttgc      2400
     ttagatgaac tcaaggaacg atggaattat tacatgcaag attgatcaac aaccagtcga      2460
     tttcttaatc gattcgggag cggcaattaa tacggtcact caacaagttt gggaagaact      2520
     cattaattcg aaggcgaatc tttttaagaa aagatttcac tgtgaccgaa agtttctggc      2580
     tttcgctacc caggagcccc tgcgcgtctt gaccattttc gaagcatgga tatcggtcaa      2640
     tgaatcgaag cctaaaagtt atgccgaatt cttcgtcatc gaagggtctc gaaaatcgct      2700
     cctcagtaaa aggacggcgg aagatttgag ggttttgaaa gtcgggcttg aggttcaaac      2760
     tattgaagtt aaaaatgatg ccttcccgaa atttcctaat gttcaggtga aattgtcgat      2820
     tgacagcagt gtgcagccga gaaaaatcgc gtatttgagg attcctgcag caatggaaga      2880
     gaaggtggat caaaaactac ttgaaatgct gaaaagcgat gtgatagaac cggtagtggg      2940
     acccccggag tggatatcgc ccatggttgt agtgcccaag ggtaaagatg acattagact      3000
     gtgtatcaat atgaaatacc ctaatgaagc gatacaacgt gaacattacc cactcccgat      3060
     gatcgatact tttctgaata agctcagagg ttcgaccatc ttctcgaagt tggacatcac      3120
     gtcggcattc taccacattg agctgcaccc ggaatctcgt ggaatcacga ccttcatgac      3180
     aagcagaggg ctcatgcgat tcaagcggtt aatgttcggc attaactgtg ctccggagat      3240
     cttccagcga gtgatgtccg ggatgttagc tggcattgaa ggagttgtgg tgtacatcga      3300
     cgacgttgtt gtagctggaa ggactaagga agagcacgat gctcgactgc aagaagtact      3360
     ggccgtcttg aaggagaata acgctatatt gaacaaagac aaatgtctaa tcggagtatc      3420
     tgaacttgag attttgggat tcaaagtgag tgcagcagga atttgtccat cagatgaaaa      3480
     ggtttcagct atccagaact tccgaagacc ggaaacgaaa gaagaagcta gaagttttct      3540
     tggccttgtc aactttgttg gacaattcat cccacatctg tcaacgagat ccgagccatt      3600
     gcgccagttt atcaggggtg atgttgagaa tttcggtgaa agtcaacaga gagcttttga      3660
     tgatcttcga aatgcgttgt caaatactgt tcgcagattg ggatttttcg acccgaagga      3720
     caaaaccgaa ctgtacgtcg atgcttcttc ggtaggtctt ggagcggtac ttactcaacg      3780
     aaacagcgat caagcaccaa gaatcatatg ctttgcttca aaagggttga ctaaaacgga      3840
     aagggtgtac ccacaaacgc aacgagaagc attagcagtt gtgtgggcag tcgaaaaatt      3900
     ctacccatac ttgtttggca ctcatttcac aatatttacc gaccacaaaa cattggaata      3960
     tatttatgaa gaaaagcacc aacaaggaaa gcgtgcttgt tcaagagctg aaggatgggc      4020
     gttgcggctt cagccgtacg actttcatgt gaagcatatc cctggttcaa ccaacatttc      4080
     ggacgctctc tcaagattga gcgcgcagtt cgatacggca tcagatacac cttttgatga      4140
     agctactgaa cattatttgt gtgcagttgg agagggtcca acagctatat ctgtacaggt      4200
     tggtttttgg tgacggagat gaaggggact actgctgcaa aaacgattga agcactcgag      4260
     tctattttcc aggagcaaac atatccggag acaattcgga gtgataatgg accaccgttt      4320
     tccagtgagg agttctctga ctactgttcc tctaaaaata ttcggcttat tcgtaccatc      4380
     ccatactggc cacaaatgaa cggcctcgtg gagaggcaaa accaaggtat tttgcgtacc      4440
     ttgcgtattg ccaaggccat taacacagac tggcgcaaag ccatccgcga ttatgtgtat      4500
     gcgtacaaca cgacgcctca ttcgataaca gggaagtcac ccatggaact gatgacgggc      4560
     agaccagtta aagatctgct accatctctg cgaaccgaac cctcttggcg ccgagatgag      4620
     gaaaccaaag acaaggatgc gattaagaag atgcaaggaa agctttatgc agaccagcga      4680
     agacacgcca ggccatccga gatcgatgtt ggagacgaag tcatgctcaa aaattacgaa      4740
     actggcaagc tcgagcccaa attcagactt gacaaattta ctgtaataaa gaaaagtgga      4800
     aatgatgtga tcgtcacaaa cgaagaagga gttatgtatc gccggcctgt gtctcatcta      4860
     agaaaatggc cgtccggaga aggaaccgaa tccagccagg aggcttcgaa gaaccatcag      4920
     ccccacaatt caaaggtacc ggaacccttt ctggtgacaa acgattcgac catggaaaaa      4980
     caacccaaat cgaactcctt caaaatacac tcaccacctg agccaccagc gatgaaagga      5040
     aattcatcta cgaagaaggg actacaagaa caaagcgaag gcagcagtac tgcaaaacgt      5100
     cccaaacgtc acaagaaatt accatctaga tacagttcgt aacttcagca atcagtgtag      5160
     gctagactag aggttagatt gttttttttt gttgtttttt tctatcagag tagaaaaggg      5220
     a                                                                      5221
//
ID   Gypsy-193_AA-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   supercont1.84;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-193_AA_;
KW   Gypsy-193_AA-I; Gypsy-193_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-277
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.84; Positions   83598   83874.
XX
SQ   Sequence 277 BP; 97 A; 42 C; 67 G; 71 T; 0 other;
     tgtagagttg gcaattgaaa gctatattat gttactttac cctattacgc ctgacgactt        60
     gacttctcag agagagagat tattagattc gaagagaggg agaaaatgta acgagaatga       120
     actgaggaag ggggatacat gaaattcagt acagctagcc agaagttgat caatcattgt       180
     cgcgactaga ggcaaataaa ttgtctacgg aaaatataaa agtgttttat aagtgttccg       240
     aaaagtgagc ggaaatttcc accggcgaga ctctaca                                277
//
ID   Gypsy-194_AA-I repbase;    DNA;    INV; 4507 BP.
XX
AC   supercont1.67;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-194_AA_;
KW   Gypsy-194_AA-LTR; Gypsy-194_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4507
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.67; Positions 1682760 1678254.
XX
CC   'TATAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           423..4433
FT                 /product="Gypsy-194_AA-I_1p"
FT                 /translation="MFNVPEERHEDYLLHYMGATTYDLLCDHISPIEPETK
FT                 SYAEIVTTLEAFFDQEPLEMVEVWKFRNRTQKEGETMKEFITELQRDAKFC
FT                 KFGDYLKKELRNQLVFGMRSKRIRSRLIEEKELTFEKALEIALSMEASGEG
FT                 AEIFEKRTQDVNYTERRQVKVTHTAKRKCYRCGSEAHLASTCRHKETVCNF
FT                 CKKLGHLQRVCLKFQSLGEQSKQGKESKLMRKKMQNNLIDEGDNSDDVREI
FT                 EESDVDEILTLEICKVDDRSKSLSKVILPLEVNKRVIKFEVDCGSPVSLIG
FT                 LNDKEVYLGELPLFKTDVELMSYCGNKIAVCGYVKAEVQLSGDSKSLRLFV
FT                 VNTERHPLLGREWMRKLNVDWNEIIRNPVPCVGAISVRNSGKPLSGAVRDL
FT                 IEVFPRVFDSSIGTIRGVRAALHFKPNSKPVFLKARTIPFAIRDTVEREIT
FT                 SMAESGILKKVERSAWATPVVPVMKSADRVRLCGDYKITVNKCLVVDEHPL
FT                 PTIDELFSNMAGGQKFTKLDLAQAYLQMEVREEDREALTLNTHLGLYQPTR
FT                 LMYGISSAPAIFQREISQLLGDIPGISVFLDDIKVTGPDNETHLQRLKMVL
FT                 QRLDEHGMRLNVAKCEFFADRIEYCGFVIDREGIHKMKTKVDAIQQMPIPC
FT                 NREQVRAFVGLINYYGRFMKNLSTQIYPINNLLKDNVPFRWDDECNKAFLW
FT                 VKKEMQSDRVLVHYDPKLPLVLATDASLYGVGAVLSHLYPDGTERPILYAS
FT                 QTLNRSQQNYIQVDKEAYAIIFGVKKFYQYLYGRKFILVTDNKAVTQILAP
FT                 HKGLPTLSAVRMQHYAVFLESFNYEIRFRSSKENANADAMSRLPIQDKVNQ
FT                 HQIEEADLVEVKQIETLPVTAEVLAEGTKEDSNVKMLMQGLKVGRSVEGCD
FT                 RFGINQSEFSVQKGCLMRGIRVYIPPKLRRRVLEELHTGHFGVSRMKSLAR
FT                 SYCWWETVDSDIEELSRDCGDCARVRKNPVKVAPHCWEKASEPFQRIHIDF
FT                 AGPFLGLYFFVIVDSFTKWPEVKIVPDMTTDTTIDRLREYFVTYGVPSIIV
FT                 SDRGVQFTSDQFQTFLKRNNITHKMGAPYHPATNGQAERFVQTFKDKLKAL
FT                 KCERKDVQFELYKILMAYRRTVHPSTDKSPSMLVFGRQMKSRLDLLVPTSV
FT                 PKDPSPGNGACVRSFKINERVAARDFLGSSKWQFGKAAERIGKLHYMIELD
FT                 DGRIWKRHVDQMRVGPVERNPNIESSTECTDRLRRSHLVYYSNQIPSVENS
FT                 DTVIPQQTTVVQTPNKTPTQAVDESAVSSRPVVMKIPSESRVSAPIIEIPI
FT                 QCNIETPRRSTRMRNPPKRLDDLCD"
XX
SQ   Sequence 4507 BP; 1333 A; 908 C; 1149 G; 1117 T; 0 other;
     gtttggcgac gataggagaa aaaacctacg caggaacaga ggaatcgacg acattgcaag        60
     tttccgctct cggaggtttc atcaagagga cgaattccag attgggaata tcagcgggaa       120
     gttggaaggt accaaccttg ctggcgttac gaaagggggc ctttccggac gaagctggtg       180
     tgagtacgag cgatcggctg ttactgtatt agtgctacac tgctgctgct gctgatgatt       240
     gaatgctttg gttgctgcga acgacgggtg tgttgatgta aacaatgatg gaagacgata       300
     gagaagcggc tgtggctgtt ccggctacag caccagtcgc gcctaatttc tccatggaac       360
     cgttcgacaa agaaaaaggc aaatgagcga gatgggtgaa acgtttggaa ggaggatttc       420
     gtatgttcaa tgtgccggag gaacgccacg aagactactt gctacattac atgggagcta       480
     cgacatacga cctactttgt gatcatatca gcccgatcga accggagacg aagagttacg       540
     ctgaaattgt tactacgttg gaagcattct tcgatcagga accacttgag atggtagagg       600
     tatggaagtt tcgcaatcga acgcaaaagg aaggagaaac catgaaggag tttataacgg       660
     aattgcaacg cgatgcgaag ttttgtaaat ttggagacta tctgaagaag gaattgcgga       720
     accagctggt cttcggtatg cgatcgaaga gaattcggtc acgactcatc gaggagaaag       780
     agctgacgtt tgagaaggcg ttggagattg cgctctcgat ggaagcatcg ggagagggcg       840
     cggaaatttt cgagaagcga acacaagatg taaactacac tgagaggcga caagtgaagg       900
     taacacacac tgcaaaaagg aaatgctacc gatgtggaag tgaggcccac ttggcgagta       960
     cttgtcgtca taaagaaacc gtttgcaatt tctgcaaaaa gttaggacat ctccagcggg      1020
     tgtgcctcaa attccaatcg ctgggagaac aatcaaaaca gggcaaagaa agcaaactta      1080
     tgagaaagaa aatgcaaaat aatttgatag atgaggggga caacagtgac gatgtaaggg      1140
     aaattgagga gtcagatgtt gatgagatcc ttactcttga gatttgcaaa gttgatgaca      1200
     ggtcaaagtc tttgtcgaaa gttatcttac cgttagaggt aaataaaagg gtcatcaaat      1260
     ttgaggtcga ctgtgggtct ccggtttctc tcatcggcct gaacgacaag gaagtttacc      1320
     tgggcgagtt accattgttc aagactgacg tagagttgat gagctactgt ggcaacaaaa      1380
     ttgcagtttg tgggtatgtg aaagcggaag tgcagctgag cggtgactcg aaatcgttgc      1440
     gattgtttgt ggtcaacaca gaacgtcatc ctttgttagg tcgtgagtgg atgcggaagt      1500
     tgaacgtcga ttggaatgag atcattcgaa atccagtgcc ttgtgtagga gctatttcgg      1560
     ttcgcaactc tggtaaacca ttatctggtg ctgtgcggga tcttatcgaa gtttttcctc      1620
     gggtgtttga ctcgtcgatt ggtactattc gaggcgttag ggctgcattg cacttcaagc      1680
     caaacagcaa accagtcttc ttgaaagctc gtaccattcc cttcgccatt cgtgacactg      1740
     tggagcgtga aataactagc atggcagaaa gcggaatact caagaaagtg gaacgtagtg      1800
     cctgggccac tccggttgtt ccagtcatga aatcggcgga tcgtgtacgt ttatgcggag      1860
     actacaagat aacggtcaac aaatgtctcg tggttgacga acaccctttg ccgaccattg      1920
     atgagctgtt ttcgaacatg gctggcggac agaaatttac aaagttggat ttggcgcagg      1980
     cctatctgca aatggaagtt cgagaggagg atcgtgaagc cttaaccttg aatacgcatt      2040
     tgggtctcta tcaaccgaca cgtttaatgt acggcatttc ttccgcacca gccattttcc      2100
     agcgtgagat ttctcagctg ctaggagata tccccggtat ttcagtattc ctagatgata      2160
     ttaaggtcac aggtccagac aatgaaacac acctgcaacg attgaaaatg gttctgcaac      2220
     ggttggacga acatggtatg cggttgaacg tagcaaaatg tgaattcttt gcggaccgca      2280
     tcgaatactg tgggtttgtg attgaccgag aaggaataca caagatgaaa accaaagtag      2340
     acgctattca gcagatgccg ataccatgca atcgtgaaca agttagagct tttgtcggtt      2400
     taataaacta ttatggtcga ttcatgaaga atttaagcac tcaaatttac cccatcaaca      2460
     acctgctgaa ggataacgta ccgttccgtt gggatgatga atgcaataaa gcgtttttgt      2520
     gggtcaaaaa ggagatgcag tcggatagag ttttggtaca ttacgaccct aaacttccat      2580
     tggtgttggc aactgatgca tcactttatg gtgttggtgc cgttttaagc catttgtatc      2640
     cggatggtac cgaaagacca attctctatg catctcaaac cctgaacaga tcgcaacaaa      2700
     actacataca agtcgataaa gaggcgtatg cgatcatatt tggggtcaaa aagttttatc      2760
     agtatctcta cggccgcaaa ttcatcctcg taactgataa caaagccgtt actcaaatct      2820
     tagcacccca caaaggactt ccaacgctaa gtgccgtgcg aatgcagcac tatgcagtct      2880
     tcttggagtc gtttaattat gagattcgat tccgttcttc gaaagaaaat gcgaatgcgg      2940
     acgcaatgtc cagattgccg atccaagata aggtaaacca gcatcaaatt gaggaagcgg      3000
     acctggtcga agtgaaacag attgaaactt tacctgtaac agcagaagtt ttggcggaag      3060
     gcactaagga ggactctaac gtaaaaatgt tgatgcaagg cttgaaagtg ggacgaagcg      3120
     ttgaaggctg cgacagattt ggtatcaatc aaagtgagtt ctcggtccag aaaggttgtc      3180
     tgatgagagg tatacgagtc tacattcctc ctaagctacg acggcgagta ctagaagagt      3240
     tgcacacggg acacttcggc gtatccagaa tgaagtcttt ggcgcgatcg tactgctggt      3300
     gggagactgt cgacagtgac atagaggaat tatcaagaga ctgtggtgat tgtgccagag      3360
     ttcggaaaaa tcctgtaaag gttgctccac attgctggga aaaagcttca gaaccattcc      3420
     aacgaatcca tattgatttt gcggggccgt ttctaggact gtactttttc gtgatcgtgg      3480
     attcatttac aaaatggcca gaagtcaaga tcgttcccga catgacaacg gataccacaa      3540
     ttgaccgtct gcgtgaatac ttcgtcacat acggagttcc atcgattatc gtcagtgatc      3600
     gtggggttca gttcacctca gatcaattcc agacgtttct gaagcgtaac aatatcacgc      3660
     acaaaatggg agccccgtat cacccagcta caaacggtca agccgaacgg tttgttcaaa      3720
     cttttaagga caaacttaag gcattaaagt gtgaacgaaa ggatgtgcaa ttcgagctgt      3780
     acaaaattct gatggcgtac cgtagaaccg tacatccttc aacggataaa tcaccatcta      3840
     tgctagtatt tgggaggcaa atgaaatcca gactcgatct gttggttcct accagcgttc      3900
     ctaaggatcc atctcccggg aatggagcgt gtgtgcgaag cttcaagatc aatgaacgag      3960
     ttgcagcacg ggactttttg ggatcctcta aatggcaatt cggtaaagca gctgaacgaa      4020
     ttggaaaact ccattatatg atcgagttgg acgatggcag aatctggaaa cggcatgtgg      4080
     atcagatgag agtgggccct gtggaacgta accccaatat cgagtccagc acggaatgta      4140
     ccgatagatt acgacgtagc catttggttt actactctaa tcagatacct tccgtcgaaa      4200
     attccgacac tgtcatacct caacaaacaa cagtagttca aactccaaat aaaacaccaa      4260
     cacaagctgt cgatgagtct gctgtatctt caaggccagt tgtcatgaag attccgagcg      4320
     aaagtcgggt aagcgcacct ataatcgaaa taccaataca gtgtaacatc gaaacacctc      4380
     gtagatctac aagaatgaga aacccaccta aacggcttga cgacctatgt gactaacaat      4440
     actaacctta tatatatgtt gaattcgatg tatgttaggg cacagcatct gttgagaggg      4500
     ggaaagc                                                                4507
//
ID   Gypsy-194_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   supercont1.67;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-194_AA_;
KW   Gypsy-194_AA-I; Gypsy-194_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.67; Positions 1678253 1678064.
XX
SQ   Sequence 190 BP; 57 A; 33 C; 36 G; 64 T; 0 other;
     tgttggggtt ttaccttaaa cgcacaatat tattgacctg tccatacaca ttgattgtca        60
     ttgatatgaa gcaagagaaa aataaaggta ttgagttata agcaaacgaa caagcaacac       120
     gcgtttaact ttgctcttgt tatccggaat ttctgcggcc attctgtttg tcttgcattt       180
     gattatagca                                                              190
//
ID   Gypsy-195_AA-I repbase;    DNA;    INV; 6928 BP.
XX
AC   supercont1.68;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-195_AA_;
KW   Gypsy-195_AA-LTR; Gypsy-195_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6928
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.68; Positions 2010395 2017322.
XX
CC   Positions [4838-5314] - Integrase core
CC   'GTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           600..2579
FT                 /product="Gypsy-195_AA-I_2p"
FT                 /translation="MESKYASQYRSMNVNHLLDDELEYELVLRKVKFSSGE
FT                 SRDIKRRKLRGAMKEERDANTFASRSIAEEARESESRLVEEKITMIRDSLE
FT                 TRKAKKSEFPQLETRLVHLYFRLQRLKKVFNIDGLEQLVHRLLNEYFSCRS
FT                 RDPEEIGEPSTRYIPRQSSQDRERVESEEDVSNPRTEDESKDDSEKDEETL
FT                 SDELDFDVRNVRSRRSSTPKGPENKVVNADELVERIMQQVDKMITSKLKAL
FT                 NLAGVEQSSNSENKSRQMRKKRIPQALSVEKSEQSKIVSNQRGARRVVKKS
FT                 DEIASVSSDAISDRDIGTDLDSEVVESDIDREDVERGKQLKRRPRPVCDWK
FT                 LKYDGRDDGRGLNKFVSEVEFMAEAENISKRALFNEAIHLFSGEARAWYIE
FT                 GKRNREFRNWTEMIAELKLEYQPPDMDYLYEQQAAARRQKRGEKFQDYYNA
FT                 IKEIFDQMAVPPTEQRKFDIIFRNLRSDYKNSLLVKGVRTLRMLKVWGRKL
FT                 DSANWFLYRKSEGDQGTKSAQIHEISQGSGPRRYQPPRNDWKDNGFKGRSE
FT                 WRNRNAGAYQGPSKTDNGGFRKPTFDQSKDNQQKPKQSTSNADPRVGNSEE
FT                 LLRKRILAYRIPERTVCFNCRGNYHHSSACLKPKEIFCSTCGFQGFRKPDC
FT                 PFCAKNGKQSM"
FT   CDS           2702..5707
FT                 /product="Gypsy-195_AA-I_1p"
FT                 /translation="MGFHIIGLLDCGAQMTVLGVGCGKLLRDLKLKLHPTG
FT                 LKLITAGGSQMEVTGFVNLPMTFNGKTKIVAAVVAPNLNRRLILGMNFWKS
FT                 FNIEPTINQDECLVEEVEAGLEEEPCLTAAEKQLLDKVKTEFKVFDEGSKL
FT                 EVTPLITHRIEFEEQFKNAGPIRLNPYPWSPEIQRSVNEELDKWIASGVVE
FT                 RSNSDWALLIVPVTKKGESSAEGRIKVRMCLDARKLNDRTRRDAYPLPHQD
FT                 RILGRLGASKYLSTIDLSKAFWQIPLDPESRKYTAFRIFGRGLFQFTRLPF
FT                 GLVNSPATLSRLMDHVLGYGELEPNVFVYLDDIVIVSNTFEEHLRSLKEVA
FT                 RRLREANLSINLEKSKFCVPELPYLGFVLSQRGIRPNPDKIEAIVNFERPT
FT                 SVRSLRRFLGMVNYYRRFISEFSEVTAPLTNLLKGKPKIVQWNDEAERAFV
FT                 ILKEKLITAPILACPDFGRPFTIQTDASDTAIAGVLTQEVNGSEHVIAYFS
FT                 RKLTMSQRSWKAAEKEGVAALEAIEKFRPYVEGARFTLITDSSALSFIMNS
FT                 KWKPSSKLSRWSMLLQQYDMFIKHRKGAENVVPDALSRAVEAIDLSKDNWY
FT                 SSLYKKVLESPDDFPDFKIEEDKLYKFVASPTDAMDYCFEWKLCLPEDMRQ
FT                 DVLKQEHDQALHPGYEKTIHRLKVRYFWPRMAIQAKKYIQSCSVCRQCKPS
FT                 TMPTAPAMGKQRLTNKPFQILALDFIQNLPRSRSGKSHLLVLMDLFSKWTL
FT                 LIPVRKIESKQVCQIVEDCWFRRFGTPEVVISDNATTFVGKEFQALLARRG
FT                 IQHWPNSRHHSQANPVERTNRTINACLRTYMEKDQRLWDTKIAEVEELVNT
FT                 TIHASTGLSPYRILYGHEKITKGDEHRLEREDREVPVEERDEARRKLNEKV
FT                 FKIVEENLRKSHEKSKKIYNLRHRKYCPTYQIGQKVYKRNFKPSSAAEKYN
FT                 AKYGPVYTPCVIVAKRGTSSYELADNSGKVLGVFSGADLRPGENYQS"
XX
SQ   Sequence 6928 BP; 2178 A; 1248 C; 1700 G; 1802 T; 0 other;
     attggcgacc aacgttaaag tcgtgaacgg taatcggagg aacgattagt atttaaaaaa        60
     aatcttgaga tttttttaac tgggcgacag gtgagtgcgc aatcaatgag ttgattgtgc       120
     agtccgacac ttgataaccg ctaatcacag tccgcgagtt ggtagattga agtgggaaga       180
     cattggcctt attcggtttc ggaagagtac ggaaaggaag aaaagttggc acaaaagcag       240
     taaagatttg attgatttcg gagacagaga catattttgg agttggtact ggtaactaac       300
     ctagaaagga cttacactga aacaaataca ctttcacact ttacaaaggt cctgaatgaa       360
     ctaaattaca ctatacaaaa caacacaagg atagcacggt ttattgaatt gtttttgaat       420
     ttttcttttt cattatttct tattttctag cttaagattt gaattttatt atttgtcgtg       480
     tgaatttgaa tttattgtct aatttctaag tgtatatatt ttgaattcgt gaactttatt       540
     gaactttagt gaactttatt gaattactct tgctttacat aaatctgatt ttaaatacga       600
     tggagtctaa atacgctagc caataccgtt cgatgaacgt gaaccatctg ttggatgatg       660
     agctggaata cgagcttgtt ctacgcaaag taaagttctc gagtggtgaa tctagggata       720
     taaaacgaag aaagttgaga ggtgcaatga aagaggaacg agatgcaaac acattcgctt       780
     cgcggagtat agcagaagag gcccgtgaat cagagtcgcg attggtagaa gaaaaaataa       840
     cgatgattag ggattcatta gaaactagga aggcaaaaaa gtcagaattt ccacagttgg       900
     aaacgcgtct ggtccacttg tacttccggt tgcagcggtt aaagaaagta ttcaatattg       960
     acggtttgga acagctagtt cacagattgt tgaatgagta tttttcgtgc cgtagcaggg      1020
     acccagagga gataggagaa ccgtctacaa ggtatattcc gagacagagt tcacaagatc      1080
     gcgagagagt agaaagtgag gaagatgttt cgaacccgcg aactgaagat gaaagcaagg      1140
     atgatagcga aaaagatgag gaaactcttt cggatgagtt ggattttgat gtgcggaacg      1200
     tacgtagtag gaggtctagt acacccaagg gtcccgagaa taaggttgtc aacgcggatg      1260
     aactagtaga acggattatg cagcaggtag acaaaatgat cacgtctaaa ctaaaagcgt      1320
     taaacctagc gggtgtagaa cagagtagta attcagaaaa caagagcagg cagatgagga      1380
     aaaagcgaat tccacaggct ttgagtgtgg aaaagagcga acaatcgaag atagtcagca      1440
     atcaaagagg ggcgagacga gtagttaaga aaagtgatga aatagcttcg gtttcgtccg      1500
     atgccataag tgatagagat atagggaccg atctagactc agaagtagta gaatcagata      1560
     ttgatagaga ggacgttgag cgcggtaagc aattgaagcg aaggcctaga ccagtctgcg      1620
     attggaaact gaaatacgac gggagagatg atggtagagg gttgaacaag ttcgtgtctg      1680
     aagtagaatt tatggcggaa gcggagaaca tcagcaagcg agcattattc aacgaggcaa      1740
     tccacttgtt ttcgggtgag gcgagggcct ggtatataga gggtaagcgc aatcgggaat      1800
     ttcggaattg gaccgagatg atagcagagt tgaagctgga gtatcaaccg ccagatatgg      1860
     attaccttta cgagcaacaa gcagcggcca gaaggcaaaa gagaggtgaa aagtttcagg      1920
     actactataa tgctatcaag gagatttttg accagatggc agtcccacca acggaacagc      1980
     gaaagtttga tataatattc cgaaacctcc gttcggatta taagaactcc ttacttgtta      2040
     agggagttcg aacgttgagg atgttgaagg tatggggacg aaaattagac tcagccaact      2100
     ggtttttgta ccgcaaatcc gaaggtgatc aggggacaaa atcagcacag atacacgaaa      2160
     ttagccaagg ttcaggtcca cgtagatatc agccacctcg gaatgattgg aaggataatg      2220
     gtttcaaggg aaggtcagag tggagaaacc gaaatgctgg tgcgtatcaa ggtcctagta      2280
     agactgataa cggaggattt aggaaaccaa cgtttgacca gtccaaggat aatcaacaaa      2340
     agccaaaaca atccacctca aatgctgatc ctagagtagg taacagcgaa gaacttttaa      2400
     ggaagagaat tctagcttat cgaattcctg agaggacagt ttgttttaac tgtcgaggaa      2460
     actaccatca ttctagcgcc tgtctgaaac ccaaagaaat cttctgttca acttgcgggt      2520
     tccagggctt cagaaaaccg gattgtccgt tttgtgcaaa aaacggcaag caatcgatgt      2580
     gagaggtcgt cgatgcagca ataaaaagcc tcttaccaag ttcgtttcaa tcgctcagga      2640
     aattggggag cttattgtac aggtagatgg ggacaatcgt ccttttgcga aagtagatgt      2700
     tatgggattt cacataattg gtttattgga ttgcggagcg cagatgacgg ttttaggggt      2760
     tggttgcgga aagctgttac gagatcttaa gctgaaattg caccctacag gcctgaaact      2820
     gatcactgct ggagggtccc aaatggaagt aaccggtttc gtaaatttgc ccatgacgtt      2880
     taatggcaaa accaaaattg tcgcagctgt agtagcaccc aatttgaatc gtcgtcttat      2940
     attgggaatg aatttttgga aaagtttcaa cattgaaccc acaataaatc aggatgaatg      3000
     cttggtagag gaggtagaag caggactgga ggaagagcca tgtttgactg cagcggagaa      3060
     acagttgtta gataaggtta aaacagagtt caaagttttt gatgaaggga gcaagttgga      3120
     agtaaccccg cttattaccc atagaattga atttgaggag caattcaaaa atgcaggacc      3180
     cattcgatta aacccgtatc catggtcgcc agaaatccaa agaagcgtta atgaagagct      3240
     ggataaatgg attgcttcgg gcgtagtgga acggtctaac agcgattggg ctttgttaat      3300
     tgtccctgtg actaagaaag gcgaatcaag tgcagaaggt cggataaagg tgcgaatgtg      3360
     tttggatgca cgaaagttga atgacaggac tcgtagagat gcctatcccc ttccacatca      3420
     ggatcgtata cttgggcgat tgggagcatc caaatatttg tcgacgattg acttgtcgaa      3480
     ggctttctgg caaataccgt tggatcccga atctcggaag tatacggcat tccgaatatt      3540
     tggaagggga ctgttccagt tcacccgact cccatttgga ctggtgaata gcccggcaac      3600
     cctatcccgg ttgatggacc atgtattagg gtatggcgag ctggaaccaa acgtgtttgt      3660
     ctaccttgac gatatcgtca ttgtaagcaa cacgtttgag gaacatctcc gaagtctgaa      3720
     agaggtagcg agaaggctta gagaagccaa tctctcgatt aaccttgaga agtcgaagtt      3780
     ttgtgttcca gaacttccgt atttggggtt cgtgctgtca caaagaggaa ttcgtccaaa      3840
     tccagacaaa attgaggcca tcgtaaactt tgaaaggccc acgtctgtgc gatcgttaag      3900
     gcgctttttg ggcatggtga actactatcg gcgtttcatt tcggagttta gcgaagtaac      3960
     ggctcccttg accaacttgc tcaagggaaa gcccaaaatt gtacaatgga atgatgaagc      4020
     tgaaagggca ttcgtcattc taaaagagaa acttatcaca gcgccgatat tagcctgccc      4080
     agactttgga agacctttta cgatccagac ggatgcaagc gatacggcga tagcaggagt      4140
     gctcacacag gaggtaaatg gaagtgaaca cgtgattgca tacttctctc gtaagctaac      4200
     tatgtcacaa cgatcctgga aagctgctga aaaagaaggt gtggccgctt tggaggccat      4260
     agaaaagttc aggccttacg ttgagggagc tcggttcact ttaatcaccg attcatctgc      4320
     tctttcattt ataatgaatt caaaatggaa accgtcatcc aagctaagtc gctggagtat      4380
     gctgctacag caatatgata tgtttatcaa acatcggaaa ggcgcagaaa acgtggttcc      4440
     agacgcactt tcgcgggctg tcgaagcgat cgacttgagc aaggataact ggtattcttc      4500
     gttatacaag aaagtattgg aatctccgga tgattttcct gatttcaaaa tagaagaaga      4560
     taagctttat aagtttgtcg catcacccac ggatgcaatg gattactgtt tcgagtggaa      4620
     actttgcttg cctgaagaca tgcggcagga tgttcttaag caggagcatg accaagcatt      4680
     gcatccggga tacgaaaaga cgatccatcg attgaaagtt cgttatttct ggccaaggat      4740
     ggcaatacag gctaagaaat acatccaatc atgtagcgta tgcagacaat gtaagccttc      4800
     gactatgccc acagcaccgg ccatgggtaa acagaggttg accaacaaac ctttccagat      4860
     tttggcactt gattttattc aaaaccttcc tcgcagccgc agcggaaaaa gccatttgtt      4920
     agtattgatg gacttattct ccaaatggac tttgctgata cccgtgagga agatagagag      4980
     caaacaagtg tgccaaattg tggaagactg ctggttcaga cgatttggaa cccctgaagt      5040
     cgtcatctca gataatgcga ctacattcgt cggcaaggag ttccaagcac tgttagcgcg      5100
     aagaggaatc caacattggc ctaattcacg ccaccatagc caggcgaatc cagttgaaag      5160
     gacaaaccgg accatcaatg cctgcctacg cacctacatg gaaaaggatc aacggctctg      5220
     ggataccaaa atcgctgaag tggaggaact ggtaaacacg accattcatg cctcaactgg      5280
     tctctctccc tatcggattc tctatggtca tgagaaaatc accaagggtg acgaacatag      5340
     attggaaaga gaagatagag aagtcccagt tgaggaacga gatgaggcgc gtcgaaaatt      5400
     gaacgaaaaa gttttcaaaa ttgtagaaga aaatttaagg aaaagccacg aaaaaagtaa      5460
     gaaaatctac aatttgagac atagaaagta ttgtccgact taccaaattg gacaaaaggt      5520
     ctacaaacgg aacttcaagc cgtcatctgc cgcggaaaag tataacgcga agtacgggcc      5580
     tgtatacacg ccgtgcgtga tcgttgccaa acgcgggact agttcatatg aactcgccga      5640
     caactccgga aaggtccttg gagtattttc cggtgcagac cttcgtccag gagaaaatta      5700
     ccagtcctaa aaagggaaaa taaacactta ttaaacgatt cgataaagag cgagcataat      5760
     gattacgaat ccagcatgct gcattatggc tctcatcttc gatcggttgc aaacagcaag      5820
     ggtcatcagt cgaccagttt cgctgaactc tcactgtgtt ggatgataac atgagagagg      5880
     agacggatat ctcatgggag aaaccgtgtc tcgagagagt ggttactctg agttccaatg      5940
     ccgaacgttg tatgctggga ggatcgaaag agttcaatta gatttatgta gtacagtgac      6000
     gtcatagaag ggttagcgat agagatagtt gaggaaggaa gaaaattgtt cttttgaata      6060
     ggcgccatac aaaagaaccg tgctagcacg catagatgag gattgctttc ctgaaatgga      6120
     gagattttta agttttcgca tgttttatgt agtattttta ttattttttt tgtttttgtg      6180
     tcgtagattt tgattataag atttgcatgt gtaataaaaa aaacgatcgc gagcaagaga      6240
     acggagcaca cgtaccttga acaatagcca taatcaaata ggagcatcca ttgtaaagac      6300
     tataggctcg ttcccagtat ttttccgccg tgatcaggac ggccgcctga tcgaattatg      6360
     ctgggaataa tcctcataat tatacaccat atcgtaggcc atattttaat ttgttctgta      6420
     tccgtttgat tcaccatagt tttaatgtgt ttgcgtccag aattttatac ttgttgttac      6480
     gttgacaata atttttatag atatactgtc ttccaaacgt gtttgctcgt acagcgtgtg      6540
     aaatcaactg atcaaccttc tcaaattcat tacctaccgt tggtagggcg ggatgaaatt      6600
     gagtaacgga tgaaccaaaa tgatcgttct actataaggt gttcgtgctt atctacatgc      6660
     atactaacag gataaaatca cacgtgaata attatggcaa attctttagg ggaatttgtc      6720
     cattagttgt cagctgattt taaaatgttg tgttatgtcc aagtaaattt taatcatttc      6780
     tatactgctt cgcgatccgt aaaaaaaata tgtagtagaa aaaattggca tttgtctttg      6840
     tgtttcaatt tattgataag tgtattgtgt aggtaaaaat ataaaaataa ttgaagtact      6900
     tcaattattt accgtggcgg gaggatag                                         6928
//
ID   Gypsy-195_AA-LTR repbase;    DNA;    INV; 1223 BP.
XX
AC   supercont1.68;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-195_AA_;
KW   Gypsy-195_AA-I; Gypsy-195_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1223
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.68; Positions 2009172 2010394.
XX
SQ   Sequence 1223 BP; 327 A; 284 C; 297 G; 315 T; 0 other;
     tgtaaccgtt tggttacaaa atctcatgat tgttttttaa tttgtgcatg ttgttgagaa        60
     actgtagtgt ttttatagat tttgttagtg ttgggttagt agaattagta ggataaaatg       120
     tttgtgatag taggataagc agatggtaat tacatgtttt gtggaacata gtggggctcg       180
     atggtagaaa agggcgaaga aatcaactgt ggtaaaatgg gcgaaaatag aactggatgg       240
     gtggtgagcg acctacaagg aaggataatg gagggataag gaacgattgg aaaactggaa       300
     ggaaaaggag ggctttgtaa gacttgggga gtcaaccatt gctcattagc aatccggcgt       360
     cagtgatagt aagtcgtgag tgagttgaac catttgtgaa acggcagtga acgaccagta       420
     gtgccagcca tagttcgttc aggtaaatct gtgaaggcga aatacctgga gactttattt       480
     taatatgcct ctggtcttca ggacctcttt tttcttgctt ttgcgtaatc tttgattacc       540
     acagcctcac gctgcacgat aggtcaagct gagtcttgaa cctgtgctct ccggctccgt       600
     atccgccatt gagcttcttc tcgaaccgca cggttctaat cgcaaaggag aacccttctc       660
     ggcgtggcca atacggtctc gcccgtggtc cgtcgatagc gtcaacgaag ggaacgccgt       720
     agacccccaa gctacgttag tagccgtaca gtggcaagcc gccattgtac ccggccagag       780
     caatccgcta ttgctttgtg cgtgcccaag ccaaccgcca tcttccagaa gaccaagaaa       840
     accgaaccaa ctcaccagaa catcaagcca cggagccatc tgcgagcgct cgccaacgtc       900
     gtccagcaac cccggtacgt accgaacaac ggaaatcatc tagccctaga attgcccttt       960
     tagaccacaa tagcccaata aatccctact tgtaaagttc aataaatccc tttagtttca      1020
     acccacattc aagttcatcc taatcttcaa gaattccata gtttctgcac ccgttgttcc      1080
     gcgtagcccc tccgaattac ccagtagcat gccgaccctg cgacacagtt caggggtctc      1140
     atgctactga gctagttaac cgggagtctt ggttctgccg tgagcctata gagcagcatc      1200
     agcgtgagtc taagtgagtc tca                                              1223
//
ID   Gypsy-196_AA-I repbase;    DNA;    INV; 6757 BP.
XX
AC   supercont1.70;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-196_AA_;
KW   Gypsy-196_AA-LTR; Gypsy-196_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6757
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.70; Positions  441068  434312.
XX
CC   Positions [3479-3940] - Reverse transcriptase
CC   Positions [4964-5440] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..2711
FT                 /product="Gypsy-196_AA-I_2p"
FT                 /translation="MADEIKFTAENLANHCLGIRVDFLDEDELDQELFMRN
FT                 MFLTGEQTMSRRRRALREALKQEKEEGVSVKHLPNSVENELAICEAKLHRL
FT                 EASSFTAHRIAPKCKSTLLHLGQRLLVLIQFSGGNYQDSARDLLLRVISHL
FT                 NHFYGGEDSISSSDENQNREEVDLTGQDTRIDQEIEQEEAIGPLPPLNEAG
FT                 SLSSPIISLGQSLDNSPQTRTVELELLNFLKRLGLSDNSVTDIGSIRRALN
FT                 GFEVELKSLRKGHDASEEGSSQRTSNDSIHTVVPGVVPVSLGSDTQNFSNP
FT                 PVISTLATITCTGTIPKSTMIQSNFQTTSLYTRPIPSVGVASSTVFYSNVS
FT                 HLNLTPTTTLGWPASTTTSVSNSPYQTTEAQNGLTSSYFNERRTHNRLGSG
FT                 TPWAIPPIPPQSCFAGFPSRTIPNTNHGWVTDVGPVPHTTMAYPLPQPSSN
FT                 LVAYRSTPSHRTLPVSQWSIEKYSGTDQGTKLNEFLALIDQLSLSEKVSAD
FT                 ELFDSAFHLFSGPAANWYMSMRSSGRLQNWNHLIHELRKAFVHPELDTLIR
FT                 SRIYQRRQQRNETFQEYYFDMDKMFRSMICPMNDQEQLDILRRNLRADYKK
FT                 ALLWKPVHDLTQLLEAGHLIDASNFSMYQKVFGTEKTVNFVSQKNPPPQNQ
FT                 NSRQIRPNPNQPEWKNQKSKPTSAQLEKSNLPRENIQNKTPAPPKTSSSPN
FT                 TQAGPSKPRRTLDYLVEGFKPPSPDVCLNCRQPDHQIDQCRSIKGLICFVC
FT                 GFKGFDSQNCPYCRKNGLQTAESRRPSEKSA"
FT   CDS           2606..5818
FT                 /product="Gypsy-196_AA-I_1p"
FT                 /translation="MFRLWFQGIRLSKLPILPKKRTADGRKSPAVREVRIS
FT                 APIAVPCSEYWEPDNDAYRTENQSHVLQIILPNLDDNRPYAWVKIHNIRVK
FT                 GLLDSGSNRTLISLKLYNYLRGANLRAPSEQIVLRSANGGQLKIVGEIYAP
FT                 FNFDGKIRIIPTLVVEGLLVDCLLGMTFWSRFNIYPKVEECALTLEEETEE
FT                 TPQPILTPQEIQRLEEVKAKFLVAVPNQVTTTHLTTHKIEIMDEWKTRPPI
FT                 RQYPYTMSPKVREKVSDELDRMLGAGIIERCHSDWSLNVVPVIKPTGKVRL
FT                 CLDARKINERTIKDAYPLPHPGRILGQLPRAKYLSTLDLSEAFLQIPLDRE
FT                 SRRYTAFSIQGKGMFQFTRLPFGLVNSPATLARLMDQVLGHGELEPFVFVY
FT                 LDDVVLVSETFQEHLRLLHEVARRLTEANLAINLEKSRFGVNELPFLGYLL
FT                 STEGLRPNPEKVRAIIDYERPNTLTKLRRFLGMANYYRRFIDDFSGITTPL
FT                 TDLLKSKSKILPWDDKAEDAFCLIKEKLISAPILVSPNFALPFSIQTDASD
FT                 IAVAGVLTQVQEDHERVIAYFSHKLTTPERNYHACEKETLAALMSIEAFRG
FT                 YIEGGHFTLITDSSALTHILRTKWKTSSRCSRWSLTLQQYNMTIVHRKGKD
FT                 NVVPDALSRCIAVVAAQTPSHWYSDLKEKVEQNPDDYVDFRIDEGVLYKFV
FT                 ATPNNPYDHRFEWKKVIAPEDRPSILRECHDDAMHQGFERTLARAKSRYYW
FT                 PKMAKDLKEYVQNCTVCKQTKAACVPVIPPMGEQRVTTHPWQIIATDYIGP
FT                 LPRSKKGNQHILVTLDLFSKWVMLSPMRKIDSGSLCRILRDQWFARYSTPE
FT                 VIISDNASVFLSREFKTLLERFHIKHWLNTKYHSQANPVERVNRTINAAIR
FT                 TYVRQDQREWDSRLSEVEIILNTSKHSSTAMTPFFIVHGHEAFIKGTDHKW
FT                 FGSEIDPPSEEQEEFRRKLFDRIYDLVKTNLQKTHENVKARYNLRHRQYSK
FT                 AFQIGQLVYYRNMKQSNAAEAYNAKYGPMYLPAKIKARLGSSSYEIEDLNG
FT                 KNLGNWSAAQLKPG"
XX
SQ   Sequence 6757 BP; 2022 A; 1550 C; 1461 G; 1724 T; 0 other;
     attggcgatc ctccgtaaaa caaaacattc cagtcttcta ttggaatatt tttttcctac        60
     ctcgggaaga ctcgaagaca atagtcactt gtctcgattc agttgtttgc tattgtagca       120
     ccacatgacc ttggaaaatt ggatgactgt tagaacttgc tcatatatgt cgttggccgg       180
     ttgagaatag aacaaaaaag ttcttcgggg aattattgtc tgaccaaagc ttcaagaagg       240
     cagcgtaagg ggttgaagaa agggaattca tcgtcgttga ccgtgttacc acgttttcgg       300
     ctccatcttg aatatcatcc catcagagat tagcaagaaa ccatacacgt gtagtggcag       360
     taacaatggc cgacgaaatt aaattcacgg ctgaaaattt agccaatcac tgtttaggca       420
     ttcgcgtaga ctttttagat gaagatgaac ttgatcagga gctgtttatg cgtaatatgt       480
     ttctaactgg cgaacagacc atgagtcgac gtaggcgcgc tttacgtgag gcattaaaac       540
     aagaaaaaga ggaaggtgtt tctgtgaaac atttacccaa ttccgttgaa aatgaactcg       600
     ctatctgtga ggcgaagctc catagattag aagcttcatc atttacagca caccggattg       660
     caccaaagtg caaatcgacg ttgctacact taggtcaacg gttgctagtg ttgatacagt       720
     tctctggagg aaactaccag gacagtgctc gcgatctctt actaagagtt atttctcatc       780
     tcaaccattt ttatggcgga gaagactcca tttcgtcctc cgatgaaaat cagaatagag       840
     aggaagtcga tttgactggt caggatacgc gaattgatca ggagatagag caggaggaag       900
     cgataggtcc cctcccacca ttaaacgaag cgggaagtct gtcatcacct ataataagtt       960
     taggacagtc gttagacaac tctccacaga cgcgaacagt ggaacttgaa ttgcttaact      1020
     ttctcaagcg cttaggatta tcagataact cggtaacaga tataggttcg attagaaggg      1080
     cgttaaatgg attcgaggtc gagctgaaaa gcctacgtaa aggccatgat gcttcggagg      1140
     agggatcttc ccagaggacc tctaatgact cgattcatac agttgtccca ggtgttgtgc      1200
     cagtgtcgtt ggggagcgat acccagaatt tttcgaatcc accagttatt tcaacactgg      1260
     caacaattac ctgcaccggc acgattccaa agtcgacaat gattcagtcg aattttcaaa      1320
     cgactagcct gtacacacga ccaatcccct cagttggcgt tgcctcgtca acagtgtttt      1380
     attcgaatgt atctcatttg aatttgacgc cgacgacaac gttaggctgg ccagctagta      1440
     ccactacaag cgtttcaaat tcaccatacc aaaccacaga agcacaaaat ggtctcacat      1500
     cgtcttattt caacgagaga agaactcaca accggttagg ttcaggaaca ccctgggcta      1560
     tccctccaat accaccacaa tcgtgttttg ctggattccc atcgcgtacc atccctaata      1620
     ccaatcacgg gtgggtcacc gatgtaggac cagtaccaca caccactatg gcttatccac      1680
     taccgcagcc tagctcaaac ttggtagcct atcgatcgac cccttctcat cgaactctac      1740
     ctgtctctca gtggagcatc gaaaaatatt cgggtacaga tcaaggcacg aagctgaacg      1800
     aattcttagc tttaatcgat cagttgtcgc tctctgagaa agtctcggca gacgaactct      1860
     tcgattcagc gttccatttg ttctcgggcc ctgcagctaa ttggtatatg tcgatgcgct      1920
     ctagtggtcg gttacagaac tggaatcatc tgatacatga acttcggaaa gcatttgttc      1980
     atccggagct cgatacgctg attcgttctc gtatctatca gagacgacaa caacgaaatg      2040
     agacttttca agagtattat ttcgatatgg acaaaatgtt ccgctcaatg atttgtccga      2100
     tgaatgacca agaacaacta gacattctaa ggcgtaatct tagggccgat tataaaaagg      2160
     ctctgttatg gaagccggtc catgatctca ctcagcttct agaagcaggt catctgatcg      2220
     atgcttcaaa tttctctatg taccaaaaag tcttcggtac cgagaaaacc gttaactttg      2280
     tatctcaaaa gaatccaccc cctcaaaacc aaaattctcg tcaaattcgg ccaaatccaa      2340
     atcaaccgga atggaaaaat caaaaatcaa aaccaacttc ggcacaactc gaaaagtcta      2400
     acttacctcg tgaaaatatt cagaataaaa ccccggcacc tcccaaaaca tcgagttccc      2460
     cgaacacgca ggcagggcct tcaaaacctc gcagaacgct ggactatctt gttgagggtt      2520
     ttaaaccacc ctcacctgat gtctgtctaa attgtcgtca gcctgatcat caaatagatc      2580
     agtgcagatc gattaagggg cttatatgtt tcgtttgtgg tttcaaggga ttcgactctc      2640
     aaaattgccc atattgccga aaaaacggac tgcagacggc cgaaagtcgc cggccgtccg      2700
     agaagtccgc ataagtgctc ccattgcagt accctgctcg gagtactggg aaccggacaa      2760
     tgatgcgtac cgcaccgaaa atcagtccca cgtactccaa attatcctac ccaatttaga      2820
     cgataaccgc ccatacgcat gggtgaaaat ccacaacatt cgcgtcaaag gtttattaga      2880
     ctccggtagt aaccgaacgt taataagcct caagctttat aactacctga gaggagctaa      2940
     tttacgagct cctagtgagc aaattgtctt acgatctgct aatggagggc agcttaaaat      3000
     tgtaggtgaa atatatgccc ccttcaattt cgacggaaaa atcaggataa tccccacact      3060
     cgttgtcgaa ggactgctgg ttgattgcct gctgggtatg accttttggt cccgtttcaa      3120
     tatttatcct aaggttgaag agtgtgctct cactttagaa gaagaaacgg aagaaacgcc      3180
     ccaacctata ctaacccctc aggaaattca acggctagag gaggtgaaag ccaaattttt      3240
     ggtggcagta cccaatcaag ttacaaccac ccatctcacc actcataaaa ttgaaatcat      3300
     ggatgaatgg aaaacgcggc ctcccatcag acagtatccg tacacgatgt ctcccaaagt      3360
     gagggaaaaa gtatcggacg agctggaccg aatgttagga gcggggatta ttgagcgttg      3420
     ccattcagac tggtcgctga acgtggtacc agtaatcaaa cctacgggca aagtaagact      3480
     ctgtttggac gctcgaaaga taaatgagcg cacaataaaa gatgcctatc ctttacctca      3540
     tccagggaga atactgggac aattgcctag ggcaaagtac ttaagtacct tggatttgtc      3600
     cgaagcattt cttcaaattc cccttgatcg agaatcccgg cgctatactg catttagcat      3660
     ccaaggaaaa ggaatgttcc aattcaccag gttgccgttc gggctggtaa acagtccagc      3720
     aaccttggcc cggctgatgg atcaagtgct aggtcatggt gaattggaac cattcgtatt      3780
     cgtttatctg gacgacgtcg tcctagtaag cgaaactttt caagagcatt tacggttgct      3840
     tcatgaagtt gcccgtcgtt tgacagaagc caatctagcc atcaaccttg aaaagtcacg      3900
     atttggtgta aatgagttgc cattcctggg atacctgctt tcgacagagg gtcttcgtcc      3960
     taacccagaa aaagtccggg ctattattga ctatgaaaga cccaacaccc taacaaaatt      4020
     acgaaggttc ctaggaatgg ccaactatta taggcgcttc attgatgact tcagcggaat      4080
     aactactccg ttaacagatc ttctaaaatc taaaagcaaa attcttccat gggacgataa      4140
     agccgaagac gccttttgtc ttataaaaga gaaactcatt agtgcaccca tattagtgag      4200
     tccaaatttt gcgttgcctt tttccataca aactgatgcc agtgacatag ccgttgccgg      4260
     cgtgctaacg caggttcagg aggatcatga gagagtcatt gcgtacttct cacacaagct      4320
     gacaaccccc gaaaggaatt atcacgcttg tgaaaaagaa actttggctg ctctcatgtc      4380
     cattgaagcc tttagagggt atatagaagg cggccacttt acccttataa cggattcatc      4440
     tgccttaacc cacatactgc gaacgaagtg gaaaacttca tctcggtgta gtaggtggag      4500
     cctgacccta cagcaataca acatgaccat cgtgcatcgt aaagggaagg acaatgttgt      4560
     ccctgatgcg ttatcccgtt gcatcgctgt tgtggctgcg caaacaccct cacattggta      4620
     ttcagaccta aaagagaagg tagagcagaa cccggatgac tacgtcgatt ttagaataga      4680
     tgaaggggtg ctatacaaat ttgtcgccac cccaaataac ccatatgacc atagattcga      4740
     gtggaagaag gtgatcgctc ctgaggatcg cccctccata ctccgggaat gtcacgatga      4800
     cgccatgcac caagggttcg aaagaacctt agccagggca aaatcgcgct attattggcc      4860
     aaaaatggcc aaagacctta aagaatacgt tcaaaactgc acagtttgca aacaaacaaa      4920
     agcagcttgc gttccagtga ttcctcctat gggcgaacag agggtgacta cacacccatg      4980
     gcaaatcatc gccaccgact acatcggtcc attaccaaga agcaagaagg gtaaccagca      5040
     tatcctggta acccttgatc tcttcagcaa atgggtaatg ttgtccccta tgcgaaaaat      5100
     agatagtgga tcactatgtc ggatccttag ggaccagtgg tttgcacgct actctactcc      5160
     agaggtaatt atatccgaca atgcgtcggt atttttatca agagaattta aaactctctt      5220
     agaacggttc cacatcaaac attggttgaa cacgaagtac cactctcagg ccaatccggt      5280
     cgagagagtg aatagaacga tcaacgccgc catacgcacc tacgttcgac aagatcaacg      5340
     agagtgggac agtcgtctct cggaagtcga aattattctg aacacgtcta agcattcttc      5400
     cactgcaatg acaccgttct ttatcgtgca cggccatgaa gcctttatta aaggcactga      5460
     tcacaagtgg ttcggttccg aaattgatcc tccctcggag gaacaagagg aattccgtag      5520
     aaaactcttc gatcgaattt acgaccttgt aaaaacaaac ctccagaaaa cccatgaaaa      5580
     cgttaaagct cgatacaatc tccgacatcg acaatactcc aaggcgtttc agatcggtca      5640
     gttggtatac tatcgaaata tgaaacagtc taacgcggct gaggcataca acgcaaaata      5700
     tggcccgatg tatctgcctg ccaagataaa ggcccgccta ggatcatctt cctacgaaat      5760
     cgaggactta aacggcaaaa atttgggaaa ttggtcggct gcacaattaa aaccagggta      5820
     gtccagctgg gcacctcaaa attgtttttt ttttcacagc caaaatttca atccagttag      5880
     ccgcccaaat atcaagcaca aatccgacga aaacagttca ttccatctgg tagtcgctca      5940
     tccttttcga gaaatcagca atccttcttt caggtccaat tccagctcga aaactaattc      6000
     aattttctta aaccgaaaca agatctttta gtgaattaag aaaattttca cgaacgttct      6060
     atcattgtct tgctgcttca atattatgaa ggtttgacgt ttgacagtaa acaaagtata      6120
     gtcttttcca tgagcaatcc tgttcatgga tggcaggatt gatggttcac atctccgcaa      6180
     agggggtgcg tttagtaaaa ctcttcttat gattaggttg tagaattata ctcccctaac      6240
     acatgaaaca ataaaggctg gttgggagta tgcgttagta gaatggcaat cgtgccttca      6300
     caggactgac aatttacaat atccacgtag acagtagaat agtttgtcac tgggttagag      6360
     gtaatttaga ttaaaatagt cataaaactg gatgagtgtg agtgtgtgct tagtgtgatt      6420
     ctgtaagggg gcgcgcccaa tatgaatgaa tgaggaatga atgttagaat gagtgttgaa      6480
     aacgtaggtg atcttcagag aagagagaaa agtgtatacc acggtagggc gaggaatgta      6540
     cgagtattct ccccgacaaa gctggactgg actagtagga aggatgacga ttctcagtct      6600
     aggggcttaa ccactgtttt caactcggta tcggtttcat taacagtcca gtcatctata      6660
     ctcaatggtc atgtcggtgc cgtgattaaa ggcacctgtt tgagataatt gatgaaaaat      6720
     tgcacgaaca atttttcttc tcgcacgagg agataat                               6757
//
ID   Gypsy-196_AA-LTR repbase;    DNA;    INV; 1078 BP.
XX
AC   supercont1.70;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-196_AA_;
KW   Gypsy-196_AA-I; Gypsy-196_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1078
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.70; Positions  434311  433234.
XX
SQ   Sequence 1078 BP; 320 A; 250 C; 238 G; 270 T; 0 other;
     tgttaccgat ctaaaaaaaa tcggaacaaa aagcattcct ttgaccttaa atttgctacc        60
     ttatcctatt taaatttaaa agattatttg aatgaagtaa ttgaaattaa aaccaaatat       120
     attaaaaaaa tattatccaa aaaaatctgc gagtagttta ttacattcca actgttagaa       180
     ttgttaaaat taatccgtga attgaaacac cgttgtacta aaattattta tggaggggag       240
     acggtaaatt caccaccaga cgaggatttt ttggatatcg ccacaacact ggatccggga       300
     aagaggagga tggaaatata gcggagaaaa agggagattt tttaggaggt tgaggtggat       360
     gtcgaaagaa agccagggat cagtatcgct tgaaccagta agcaagtcac aagtcctcta       420
     aaaccgtatc tttgctacga agtcattaga tcaccgtgtg gaaagcgcgt ggacgcgatc       480
     gggtagtgcc accaaaaagt gaagtgcctc agactcgcaa gccaaagcca attagttgag       540
     gtcgaggatt caatcggcta ccctaaggat cgtatagaga ccctcgtcac gctgtcaatc       600
     ggattacgac cggtcacact gtagcagacc accagtgggt agaatccctc tagagacggc       660
     gcacatcccc gtttcgcctg ttacgtcatt tgtcgtcacc gccccgtcgt cgcttgaaca       720
     tcaccttgag catcacagaa cccacggcag ggttgctgca ggtacgttcc atcctcctct       780
     ccccacctcc gcaccagggc cccaacgtca tcgaacagcg ctgcaccgaa taccgtaccc       840
     tccagaaatt caaataaaag aagaccttgc aattcaattc tctcagctct ctttaatgct       900
     tgttctagga aagagtcatt ggatgtagcc tgttccgagt cgttgatcag tccactttgt       960
     actatcggta agtgcacgtt gttgtgagtc ctcccgaggt cggtggccga ccctgagatt      1020
     taatagccaa gaggtaagct agccggtctg cgacgtgcct acgtcaagga tactttca        1078
//
ID   Gypsy-197_AA-I repbase;    DNA;    INV; 5723 BP.
XX
AC   supercont1.83;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-197_AA_;
KW   Gypsy-197_AA-LTR; Gypsy-197_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5723
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.83; Positions 2900896 2895174.
XX
CC   Positions [3669-4130] - Integrase core
CC   'AACGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           434..2251
FT                 /product="Gypsy-197_AA-I_1p"
FT                 /translation="MILCSKRAAVTRNNCLFRMDKNNAFSNFPTFTYGVVP
FT                 LAERRAKWFSWKRGFEICLRASKIIDADEKKDLLLAKGGFELQDIFFNIPG
FT                 ADVVTDKEKNIDAYSVAIEKLDGYFAPQRHEAHERYIFWAMKPEPDESLEK
FT                 FLMRAQMHASKCNFGKSSSESSGIAVIDKLLQLVPSHLREKLLLEVDLTVE
FT                 KVIQQVSAFETTRIASEQISGQSILQQPSKSSEIVSRIPSTCKFCGRSHAS
FT                 DGSCPAWNKTCSNCGKRGHFRAVCFSRVAVPSSSRSVDPLHGARFSKRSFG
FT                 QAFQSNVGTSAKNVNNPQKRRPGRLHAIEDDENDEEIPELVEMVSSASDSE
FT                 ELLCVKVGGVLIEMQIDSGVQSNIIDDQTWTSMQRSGVKTIGSIRCSDRKF
FT                 KAYAQTDCLKVPAMFDAEVSITDGNKQLRVDAKFYVVKGGPQPLLGKVTAK
FT                 QLGVLVVGLPSQQEALHQVDIVRPFPSVQGLKIHIPIDKSVEPVAQRLRRL
FT                 PFATLDRVEEKLKELESRNIFEKVSEPSSWVSPLVVVVKDSGDIRLCIDMR
FT                 QVNKAIMRETHPLPTIEDIRWKLNGAHVFSRLDIKDAFHQLELDDESKPLT
FT                 TFITHKGM"
FT   CDS           join(2373..3359,3363..4517)
FT                 /product="Gypsy-197_AA-I_2p"
FT                 /translation="MFQKVLEQILSDCPNTINFIDDIIVAGKTEREHDEAL
FT                 EKVLQKLKQCGILLNQAKCAFKLNEVVFVGHRFNKNGMTASPDKIDAIRSF
FT                 RSPTTGEEVRSFLGLVNYVGSFIPNLATISFPLRELTKHNVPFRWTEEEQN
FT                 AFDFIIDQMTCVGNLAHFDPKLKTRVVADASPVGLGAILLQYFEGKPRVVL
FT                 YASKSLTDTEKRYAQTEKEALALVWAVERFQIYLLGIRFELETDHKPLEAI
FT                 FSPSSTPCLRIERWVLRLQAFSYNIVYRKGKSNIADPLSRLSQPTDKEIFD
FT                 ADSDVYIRSVTEMAAVDITELEEISKEDPELSALRECDQGVWNHTVNIIKP
FT                 YHAFRNELGKVGFMVVRGDRLIVPFGLRQRMLQLGHEGHPGKTKMQQRLRN
FT                 TCWWPGMDDAIARTVDGCEGCRLVSLPERPEPMQRRQLPEAPWLDVAIDFL
FT                 GPLPSGDYLLVIIDYFSRYKEVEILRKITAQETAERLERIFVRLGYPRTIT
FT                 LNNGRQFVSREFEEFCNRRGIILNRTTPYWPQENGLVERQNRSLMKRLKIS
FT                 QALNRDWKKDLNDYLTMYYSTPHCTTSKTPSKLMSGRNIRTKLPSLRDLSS
FT                 SVPSTEYRDKDQQAKEKSRVAEDQRRRAKTSDLTVGDKVLMKNVLPGNKLT
FT                 PTFGSSVMTVTARDGSRVTVQNDETCKSYTEAKISHDFHKITLMNAFFIIF
FT                 LLVHKTLAYFIRRD"
XX
SQ   Sequence 5723 BP; 1789 A; 1021 C; 1311 G; 1602 T; 0 other;
     aattggcgac gaggatggga ttattttatt tgttgtaatt gtgctaacat ttgtacgtgt        60
     tctctgtgtc gaatttacgg ggtaagtagg tttttctttc tgaaataaag ctggaaatgt       120
     tctaaatgag tgatttttgt agcgtctacc gctacaaagc acgaagaaga tacggccaaa       180
     gagagccttt gttgaaaacg aaagaaaggg ttgtgcgtga gccctagatt tgcgacaagg       240
     agcagggatt tgcgacacgg agcagggatt tgcgacttga agcagggatt tgcgacttgg       300
     agcaggaaga gctaccgcgg caagaaagcg gttggtacgc gcggatcgat tctgttaaat       360
     tcagaagaga aaaaagtagg tcggaggcac caacgtgtag ggtgaccaga ttcggataag       420
     acaggtaaaa aaaatgattt tgtgttcgaa aagagctgct gtgacgagaa ataattgtct       480
     gtttaggatg gacaagaaca acgcattttc gaattttccc acgttcacgt acggtgtggt       540
     gccgttagct gaacgtcgag cgaaatggtt cagctggaaa cgcggttttg aaatttgctt       600
     gagggcctcg aagattatag atgctgacga gaaaaaagat ctgttgttgg caaaaggtgg       660
     tttcgaactg caagatatat tttttaacat ccccggagcg gatgttgtca ctgataaaga       720
     gaagaacatc gatgcatatt cagtagctat cgaaaagctc gacggttact ttgcgccgca       780
     gcggcacgaa gcacatgagc gctatatttt ctgggccatg aagccagaac ctgatgagag       840
     tttggaaaag ttcttgatgc gtgctcaaat gcatgctagt aaatgtaatt ttggaaaatc       900
     gtcgtcagaa agttctggta tagctgtgat cgataagttg cttcaacttg tgcctagcca       960
     tttgagagaa aaacttttgt tggaggtaga tttaactgtg gagaaggtta ttcaacaagt      1020
     aagcgcattt gaaactactc gaattgctag tgagcaaatc agcggacaga gcatattgca      1080
     acagccaagt aagagctctg aaattgtatc ccgcattcct tcaacgtgca agttttgtgg      1140
     acgttcgcat gcttccgatg gttcatgtcc tgcatggaat aaaacatgtt ctaattgcgg      1200
     gaagcgtggg cattttagag cagtttgctt tagcagagtt gctgttccct caagcagtcg      1260
     aagcgtagat ccacttcatg gtgccagatt ctcaaaacgg agttttgggc aggcttttca      1320
     gtcgaatgtt ggtacttcag caaagaatgt taataacccg cagaagcgcc gaccaggtcg      1380
     tcttcatgca atcgaagatg atgaaaacga tgaagagatt cctgagttgg tggaaatggt      1440
     gtcatcggcc tctgattctg aagagctttt gtgcgtcaag gttggtggag tattaataga      1500
     gatgcaaatt gattctgggg tgcaatccaa cataatcgat gatcaaactt ggacttcaat      1560
     gcagcgcagc ggtgtgaaga cgatcggatc tattcggtgt tcagacagga aatttaaggc      1620
     ttatgcgcag acagattgtc taaaagtacc ggccatgttt gatgctgaag tatctattac      1680
     tgacgggaat aaacaactac gtgtagatgc aaagttttat gttgtaaaag gaggaccgca      1740
     accgttattg ggaaaagtta cagcgaagca gctaggagta cttgtggtgg gattaccaag      1800
     tcaacaggaa gcgctgcatc aggtggacat cgttagacca tttccaagcg ttcaaggttt      1860
     gaagattcat attccaatcg ataaatcggt agaacctgtt gctcaacgat tgagacggtt      1920
     gccttttgca acactcgacc gggttgagga gaagctaaag gaattggaat ctaggaatat      1980
     attcgagaaa gtttccgaac cgagctcgtg ggtttctcca ttggtggtcg ttgttaagga      2040
     tagcggagac atcagattgt gcatcgacat gcggcaggtt aataaagcga taatgcgaga      2100
     aactcatccg cttccaacaa ttgaagatat tagatggaaa ctgaatggag ctcatgtgtt      2160
     ttctcgactg gatatcaaag atgcttttca ccaactggag ctcgacgatg aaagtaaacc      2220
     tctcacaacg ttcatcactc ataaaggtat gtaattagaa aaaacttgta ttaaaagaaa      2280
     gcctgtatta aatattgtag tatgattatg tttatattta agggcttttt cgttataaac      2340
     ggcttctttt tggagtgtct tgtgcaccag aaatgttcca aaaggtgttg gagcaaattc      2400
     tgtcggattg tccaaacaca attaatttca tcgatgacat tattgtagca gggaaaacag      2460
     agcgcgaaca tgatgaagca ttggaaaaag ttttacagaa actaaaacag tgtggaattt      2520
     tgttaaatca agccaaatgc gccttcaagc tgaatgaagt tgtctttgtg ggtcaccgtt      2580
     ttaataagaa tggaatgact gcttctcctg acaaaatcga tgctattaga agtttcagat      2640
     caccaaccac cggtgaggaa gtgcgaagct tcttaggttt ggtaaattac gttggatcct      2700
     ttattccaaa tcttgccaca atatcgtttc ctttacgcga acttacgaag cataatgttc      2760
     cattccgttg gactgaagaa gagcagaatg cgtttgattt catcatagat caaatgactt      2820
     gtgttggaaa tttggcgcat tttgacccta aactgaagac ccgtgtagta gctgatgctt      2880
     ctccagttgg actaggagct atacttctgc aatatttcga agggaaacca agagttgttt      2940
     tatatgcaag taaaagttta acggataccg aaaaacgtta tgcacaaact gagaaagaag      3000
     cccttgcctt agtttgggca gtagaaagat tccagatata tctgttaggt attcgttttg      3060
     agctggaaac ggatcataag ccactggaag cgatattttc accaagttcc acgccttgtc      3120
     tacgtattga gcgttgggtt ttgcggttgc aagcgttctc ctacaacata gtctacagaa      3180
     aagggaagtc aaacatagca gatccattgt ctagactatc gcaaccaact gataaggaaa      3240
     tatttgatgc tgattccgat gtgtatatca gaagtgtgac agaaatggcg gcagtcgata      3300
     taactgaact agaagaaatc tcaaaggaag atcctgaatt atcagcttta agagaatgtt      3360
     aggaccaggg tgtttggaat cacacggtaa atatcattaa accgtaccat gcattccgaa      3420
     atgagttagg aaaagttgga ttcatggtgg taagaggtga taggttgatt gttccttttg      3480
     gtttgaggca acgaatgtta caattaggac atgaaggtca tccaggtaaa actaagatgc      3540
     aacaacgact gagaaatact tgttggtggc caggaatgga tgatgctata gctcgcacag      3600
     tagatggttg tgagggatgt cgtttagtga gtctaccgga acgtccagaa cctatgcaaa      3660
     gaagacagct acccgaggct ccatggttag atgtagctat tgatttttta ggacctcttc      3720
     cgtctggaga ttatcttttg gtaatcattg attatttcag tagatacaag gaggtagaga      3780
     ttctgaggaa gataacagca caagaaacag ccgagcgatt agaaaggatt tttgtgagac      3840
     ttggttaccc acggaccatt actttaaaca atgggcgaca atttgttagt cgtgaatttg      3900
     aggaattttg caatcgtcga ggaattattc tgaaccgaac aacaccttat tggcctcagg      3960
     aaaatggact ggtagaacga caaaaccggt cattgatgaa aagactgaaa attagccaag      4020
     cccttaaccg cgattggaaa aaagacctta atgattactt aactatgtat tattccactc      4080
     cacattgtac aacgtccaaa actccatcaa aactaatgag tggcaggaat atccgcacta      4140
     aacttccttc attacgggac ttgtcatcat ctgtaccatc aacggaatat agggataagg      4200
     accagcaagc gaaagagaaa agcagagtag cggaggatca acgtagacga gcaaaaacat      4260
     cagatttaac agtcggagac aaagttctta tgaaaaacgt gctacctggt aacaagctta      4320
     cacctacttt tggatcaagc gtaatgacgg tcacagcacg ggatggttca cgcgtaactg      4380
     tgcaaaatga tgagacctgt aaaagctaca ctgaggcaaa aatctcgcat gattttcata      4440
     agatcacact aatgaacgcg ttttttatta tttttttgtt ggttcataag acacttgcgt      4500
     atttcattcg acgagattga gattcataag acaagtgtaa ttttttcata acaatcaatt      4560
     gtcaatgtcg tacgaacgct tatgaacccc attgctcatc attgtgaaga accacgtgag      4620
     gcaaattttc tcggtacagc catttcacta tcataaattc aatatggctt ccgaaatgga      4680
     cgtgtttgct gatttgtcgc tggctgactc cgtttttaat gcatcaaagg gtaaacattt      4740
     tctatttatc atcaattccg ctgtaactaa cactttcttt caatcagatt aaggaattgg      4800
     atccaaagaa taagattttt ggatgaaaat tcaaaacaat ttgtatgacg cggaagaaat      4860
     cacaaacccc cctcatccat taatccgccc ctaacgtaaa cctgcaccaa ttcaggcgtt      4920
     cttcacaact tttctcaata atgtttcgct gctataatat acttcttcgc gttcaaaata      4980
     ggttagccaa ctagagaaaa tagaattttc atccatttta tcgtatcgca aatcgattct      5040
     aatgcttaca gtaaagtgct ttaatcgaat tgcgacatga caaaatggat gaaaatttga      5100
     ttttcccaag ttgtttaacc tatttttcaa cgcggattag tattattcat tcattgaaat      5160
     ttataatcta aagctcaaat tacacaagac agtcttatgg aaccaagaat ggatcagaac      5220
     gtaattcata agactatcta tggattttgt tatcaagtca atgctggttc ataagatcat      5280
     cttacgaaat tccttcgagg tgtattatgg aaacaacatc tgccgaaaac catacgatgg      5340
     tcttatgaat ttcaaagatt tttcttgtgt cgtaattcca taagcaaatc ttatgacagt      5400
     cttacgattg ctttcctcag tgtacgatag aaatgtgagt catctaaaga agatagtggg      5460
     cccatcatta gaagaaaaag aggaagatca atctcaacag ccagcgcaga gagtggagga      5520
     aaatcaggaa ctcgagcaag ttttagaacc aacaatagga gaaccaggaa cgatggacaa      5580
     tgtggttcaa caggatacga gcaatgtaac actgttaccc cggaacagac cccatcgaaa      5640
     cattagaaaa cctcgttatt ttgatgattg tgagctagat tattgatctt tcttaaactt      5700
     aagcttctat aaagaaaggg aga                                              5723
//
ID   Gypsy-197_AA-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   supercont1.83;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-197_AA_;
KW   Gypsy-197_AA-I; Gypsy-197_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-164
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.83; Positions 2895173 2895010.
XX
SQ   Sequence 164 BP; 45 A; 19 C; 34 G; 66 T; 0 other;
     tgtgatgaga tgtctaagta tgtttatctg tggtctttac caacacaatg atgtatgtag        60
     tacggtgtta cctttatatt gatatacttt gtttgtttac aactgaatac atgattgatg       120
     gtagcgaatc agagtagttg gtgttattaa gtttatctat caca                        164
//
ID   Gypsy-198_AA-I repbase;    DNA;    INV; 4096 BP.
XX
AC   supercont1.72;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-198_AA_;
KW   Gypsy-198_AA-LTR; Gypsy-198_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4096
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.72; Positions  711863  715958.
XX
CC   Positions [1267-1641] - Reverse transcriptase
CC   Positions [2905-3372] - Integrase core
CC   'GTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           757..3918
FT                 /product="Gypsy-198_AA-I_1p"
FT                 /translation="MIDSGADVNTVGMEVLDALMDSDPLKSSLFSLKNGTD
FT                 RPLKAYATPTAIPVVATFVAELFITSDRPRLLEKFYVVHDAKPLLGRSTSM
FT                 RYSLLRMGLNVPIRDIVANEAQLLPGEIHVVSSTNEFPKFNIPPVQLHYDK
FT                 GLPPSRHVFTSIPPAFKEETSRRLEELLSSDIIEKVTSDMDKSFCSSLLVV
FT                 PKGKCDIRLVVDLRGPNKCIVRTPFKMPSLESIVSDLHGAKWFSTIDLSSA
FT                 FYHVVLHEDCRHLTNFFAGDATYRFKRLPFGLCNSPDIFQEILQTVVLEDC
FT                 PGTVNYLDDILVFGGTKEEHDRNLEKVLRRLREHNVLLNAAKCVFSKQSVT
FT                 FIGFRLSQDGWSVDDDKRKAIENFRRPESLSEVKSFLGLMNFTERFIVNRA
FT                 EKTEKLRSLTKSDKFYWTHEEEKEFMFLKTEALNSIIKLGYYDHRDKTELY
FT                 VDASPVGIGSVLVQFSCSGDPRIIACASKALTMAEQRYPQTQREALAIVWG
FT                 VERFRYYLTSKNFTIRTDSEANEFIFGGEHRTSRRAITRAEVWALRLLPYS
FT                 FQIERISGHQNVADALSRLIDRSQVDDSFDEDNEKHMLYALDAGSMSISWA
FT                 EIQSASENDDELCEVRLGILSGKWPRGLRRYECQSKYLRVLDPLVFKNHLI
FT                 VLPSSLRRRAIEAAHQGHVGCGATKHILREFFWWPNMAKEAEAFVAKCETC
FT                 IVITRKNPPVPLCSRTLPNGPWEILQIDFLSVQGCGCGHFLMCVDTYSRYL
FT                 HVVELKQTDARHTNAALCKIFSVWGLPLVLQSDNGPPFRSVEFVDHWEAKG
FT                 VRVQKSIPLSAQSNGAIERQNQGVIKALAAAKLEQRSWREALEQYTYIHNT
FT                 RKHHSRLGITPFELLVGWRHRGTFPSLWEQTEMLDRNDVAESDAYSKLVSK
FT                 QFADRHRGAKDSDISVGDKVVVSVTQRTKTDPKFSLERFTVLTREGAKVVI
FT                 RGEDGLEMSRNVQDVKRVPVITDLETYEEEKQITVNGDSNQSTSAVTHPGN
FT                 NYSFADTTESLPCASTSADKSSAESNRPRRVIRKPAKLNDMYLFNIFQ"
XX
SQ   Sequence 4096 BP; 1231 A; 823 C; 938 G; 1104 T; 0 other;
     atggcgcagt acggttattc agaacctgaa aacagtattc aagcgattcc cgattaagta        60
     gtaattcacc tgagagggta aaacaggcaa ttcctccgag tgggtaaagc cgggattttg       120
     ataacacata catattgttt gactagaata acacatttat tttgggattc ataatgattt       180
     ggtcgttacc tgaacttcgt taatgtgaga tttactgtat gcctctaagt gaacatttat       240
     gtttgttatt cacagactgc gaccttatca tccaacgcct atatgagtac gtttgaggat       300
     acagtaattg atcctacctg cgatgttcga ccaaaagtgg ccgtcgatcc gatacttcac       360
     gaaaatcaag tgcaccatct accgtccatc aagactattc ctgaacatgt ctcatctacc       420
     ggtggacaca gaatcggaaa atcaaatgca gtacagttta atgaaaatca gtcacccgaa       480
     atggttcgta gacaatattg atcatttttt tctctaatta gctatagtaa catgctgcca       540
     atataatttt tcattccgca gaacggtgga tgtggacagc atagctcagc tcaaaacgcg       600
     atctcttctg ataatgcggg atgtgatccc agcgcagtaa tcggaaatca aatcgtgtca       660
     aatgttcatt tcgaaactaa tcatttgtat caatcaaaca aattaggtga cgaaagcttg       720
     gttgtaggcc agatcgcagg cataaacgtc acatttatga tagattcagg ggcagacgta       780
     aacacggtcg gtatggaggt actcgatgcg ttgatggata gcgatcctct caaaagttcc       840
     ttattcagtc taaagaatgg gacggatagg ccactcaaag cctacgcaac tccaacggct       900
     attcccgtag ttgccacttt tgttgcggag ttattcatca cttctgatcg accacgtttg       960
     ttggaaaaat tttatgttgt gcatgatgcg aaacccttgt tgggtagaag tacttcaatg      1020
     aggtacagcc tgttacggat gggattaaac gttccgattc gagacatcgt tgcaaacgaa      1080
     gcacaattac taccggggga gatacatgtg gtctcatcga caaatgaatt ccccaaattt      1140
     aatatacctc cagtgcagct gcattatgac aaaggcctac caccttcaag acacgttttc      1200
     actagcatac caccagcatt caaagaggaa acaagccgaa gactggaaga attgctatct      1260
     tccgatatta tcgagaaagt tacttccgat atggataagt ctttctgctc ctcactgttg      1320
     gttgtcccga aagggaaatg cgatattcgg ttggttgtcg acctgcgggg tccaaacaaa      1380
     tgtattgtac gaactccgtt taaaatgcct tcactagagt ctatcgtttc ggatctacat      1440
     ggagcgaagt ggttttccac gatagattta tcaagtgctt tctatcatgt ggtgttgcac      1500
     gaagactgta ggcatttaac gaacttcttc gcgggagatg caacgtacag gtttaagcgg      1560
     ctcccattcg gtctgtgcaa ctcgccagac atttttcaag agatattgca gactgtggtg      1620
     cttgaagatt gtcctggtac agtaaactat ttagatgaca ttcttgtttt tggtggcact      1680
     aaagaggagc acgacagaaa cctggaaaaa gttcttcgtc gactgcgcga gcacaacgtc      1740
     ctcttaaacg ctgcaaagtg cgtgttttcc aaacaatctg taacgttcat tggattccgc      1800
     ctatctcagg acggttggag tgtagatgac gacaaacgga aggcgatcga aaattttcgt      1860
     agaccagaat cactttcgga agttaagagc ttcctaggcc taatgaattt tactgagcgc      1920
     ttcattgtga acagagcgga gaagaccgaa aagcttcgtt ctctaactaa atcagataag      1980
     ttctattgga cccacgagga agagaaggag tttatgtttt tgaaaactga agcgttgaat      2040
     tccatcatta aattaggtta ttatgatcat cgtgacaaaa cagaactata tgttgatgcc      2100
     tcaccggtcg gaataggatc cgttctcgtg cagtttagtt gctcaggaga tccacgaata      2160
     atagcgtgtg cgtctaaagc tctaaccatg gccgaacaaa ggtacccgca aacgcaacgg      2220
     gaagctctag cgatcgtttg gggtgttgag cgtttcagat attacctgac tagtaagaac      2280
     tttaccataa gaacggattc agaggccaac gagttcatat tcggaggtga acacagaacg      2340
     agccggcgag ctattacacg tgctgaagtc tgggcgttgc gactccttcc atacagcttt      2400
     cagattgaaa ggatttcggg tcatcagaat gtcgcagatg ctttatcgcg ccttatcgac      2460
     agatcacagg ttgatgattc attcgatgaa gacaatgaaa aacacatgtt gtatgctctc      2520
     gatgctggaa gcatgagtat ttcatgggcg gagatacagt cagcctcaga gaatgacgac      2580
     gaactatgtg aagttagact gggaatttta tcaggaaagt ggcctcgtgg acttcgacgt      2640
     tatgaatgtc aatccaagta cttaagggtt ttggatcctt tggtgttcaa aaatcatcta      2700
     atcgtgttac cgtcgagcct caggagacgt gctatagaag ctgctcatca ggggcatgta      2760
     ggatgtggcg ccactaaaca catactgcgt gaattcttct ggtggcctaa catggcaaag      2820
     gaagcagaag ccttcgttgc caaatgtgag acgtgtatcg tgattactcg aaaaaaccca      2880
     ccagttccgc tatgcagtcg tacacttcct aatgggcctt gggaaatcct acaaattgat      2940
     tttttatcag tccaaggctg cggttgtggg catttcttga tgtgtgtgga cacatattca      3000
     cggtacttac atgtggtcga attaaaacaa acggatgccc gacatacgaa tgctgcactt      3060
     tgcaaaattt tttcggtttg gggtcttcca ttagtcctac aaagcgacaa tggtccgcca      3120
     ttcagaagtg ttgaatttgt tgaccattgg gaggcaaaag gagtgcgagt ccagaaatcg      3180
     attcctttaa gtgcacaatc gaacggcgcc atcgaacgac agaaccaagg cgttattaag      3240
     gctttggcgg cagcgaaatt agaacagaga agttggagag aagctctgga acagtacaca      3300
     tatattcata atacacgcaa acatcattca cgcttaggga tcacaccgtt cgagttgtta      3360
     gttggttggc gtcatcgagg aacttttccc agtttatggg aacaaacaga aatgctagat      3420
     aggaatgatg tcgcagagag cgatgcctat tcaaagcttg tgagcaaaca attcgctgat      3480
     aggcatagag gtgcgaagga tagcgacatt tcggtgggtg ataaggttgt agtttctgtc      3540
     acacaacgaa caaagacaga ccctaagttt tccttagaga ggttcacagt cctaacaagg      3600
     gaaggagcta aggtggtgat tcgaggagaa gatggacttg aaatgtctcg caatgtgcaa      3660
     gatgtgaaaa gagttccggt gataactgat ttggaaacat acgaagaaga aaagcaaata      3720
     actgtgaatg gtgattccaa tcagtcaacg tcagctgtaa cacatcctgg taacaattat      3780
     agctttgcag atactactga atctctacca tgcgcctcca catcagcaga taaatcctcc      3840
     gcagaatcaa accgaccaag aagagttatt cgtaaacctg caaaactaaa cgatatgtac      3900
     ttgttcaaca ttttccaata aattaaaatt tttaaaagct ggccacaaaa ctctaaagcg      3960
     gactattaaa aatgtatcat acaaaaataa atgtgtacta catatgccgt tcgattagtc      4020
     tcttagtttt aagataagca aaatcccaaa aaaaaacctt tgaagttttg ctatgaagag      4080
     tagaggtggg gaagga                                                      4096
//
ID   Gypsy-198_AA-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   supercont1.72;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-198_AA_;
KW   Gypsy-198_AA-I; Gypsy-198_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-309
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.72; Positions  711554  711862.
XX
SQ   Sequence 309 BP; 107 A; 44 C; 79 G; 79 T; 0 other;
     tgtagggaat aaagggatat tagtgaaagg aattaagggt ttgagagggt taataaagaa        60
     aaggctcatg atggttccga gagggttaag aatcgattaa atcgacttac ccttccgcgt       120
     gactgtaaaa gggaagggag agaaaatagt ataagtgaga gcaaccagtc agtcttgtga       180
     ttgcttttgg tagagtaaga tcggtcctcg ctttcgaaaa atgttggtga gttcggacgt       240
     gcaccaaacg taactttctt gacaaaatgc tctacagtac ttaagtaata taaaccgaaa       300
     aacactaca                                                               309
//
ID   Gypsy-199_AA-I repbase;    DNA;    INV; 5370 BP.
XX
AC   supercont1.68;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-199_AA_;
KW   Gypsy-199_AA-LTR; Gypsy-199_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5370
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.68; Positions 1932926 1938295.
XX
CC   Positions [4352-4828] - Integrase core
CC   'AGCAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1825..3093
FT                 /product="Gypsy-199_AA-I_1p"
FT                 /translation="MVAFGKRFDQHPKKFSAKRKFPFNQSELGCLNCGHRD
FT                 HQTHDTACPARGKLCYTCKRVGHFGSRCRFRKFKEKHTIPSKVRMIEPQQS
FT                 PSTPDASGDTGVGKTYYAFYSGNETNVIECAIGGVKLDLLIDSGSDANLIT
FT                 DEAWESLKQAKVVVHQSTKGSSKVLKGYASDRPLPIIGTFVAEIIAGERSA
FT                 RALFYVIKGGQRCLLGDQTSKDLGILKVGLDIQNVAAQIIPFSKIKAIQVQ
FT                 VHVDPAAKPVFQPLRRVPIPLEDAVNRKLEQLLARDIIEVKDGPASWVSPL
FT                 VVVGKSNGEPRLCLDLRRVNEAVLRERHPMPTVDDFLARLGKGKCWSKLDI
FT                 KEAFLQIELAPESRDVTTFITSKGLYRFKRLPFGLVTAPELFQKTMDQILT
FT                 GCEGTYWYLDDVFVEGRDREEHDKRLEEV"
FT   CDS           3317..5332
FT                 /product="Gypsy-199_AA-I_2p"
FT                 /translation="MSFRRPENEAEVRSFLGLANYLNKFIPNLATLDEPLR
FT                 TLLKKGTKFEWNESHQKSFENVKIAIAEAQELGFFNKLNQTSVMADASPFG
FT                 LGAILMQTDQAGESRVISCASKSLTDTEKRYCQTEKEALAIVWSVERFQAY
FT                 LYGSTFNILTDCKALEFLFTDRSRPCARIERWVLRLQAFDYRVVHIPGEKN
FT                 LADVLSRLASLPAVPFDRDDELMIKNIALCSATTAALKWDDIVRETKKDAE
FT                 IQQVLECLGNASIQELPLQYRVVANELCRCEDILLRTDRIVIPQSLREKVL
FT                 QIAHEGHIGIRMMKLHLRSSVWWPKMDAAVESFVKKCRGCILVSAPEPPEP
FT                 MVRKETPNGPWQEIAIDFLRPLPDGQTLLVVVDYYSRYIEVCEMNQTTTRE
FT                 TINQLSTIFSRFGVPLTLRADNGPQFNASCEEFQAFCEDLGVQLINTIPYW
FT                 PQQNGEVERQNRSILKRLKIAQQLGQDWRQILAQFLLSYHATPHPTIGRAP
FT                 SELMFGRRIRTKLPEVPIFTRVNEEHRDHDTLQKEKGKEYADGKRKARFSE
FT                 ISVGDRVLVKRMRKDNKLSSNFAPEEYVVTRKIGADCTVKALENGKEYRRN
FT                 VAHLKKLLDDIGDSSKTGESSLKETTTAPSNSGNTEVSTKTSSAMTEPDSQ
FT                 EDIQRSVKRNHNVPVKFKDYLSH"
XX
SQ   Sequence 5370 BP; 1697 A; 944 C; 1253 G; 1476 T; 0 other;
     aacctggcga cgaggataaa ctatcgaggt gagctcaagt ttttgatata aagttgtaaa        60
     tatcgattgt ttgtgatttc tctatgactt ggaaaagcaa atggtggcgt gagtatcaga       120
     atcgtaacgg ggggaaaacg atgcttgtgg tataatataa tagtattagt gagatctgaa       180
     ctattttcct gtgggtgtag aagtgacaag atggaaaagg gtaaccattg aaatagtgtt       240
     gcaaacacgg aaaagagaaa ctttttgttt tttttttgtt tttaattact tgctgaatta       300
     tgagaaaaaa aatttacgat gatgtgggaa gtattcttcg agcgtaaaca ttgtttggta       360
     cggtaaattg gggtggaatc ttaagcatta agaaaatatt aacggattgt tcccggaaat       420
     atcatgtgtg tgtttcacga ctgtataaaa atgaatattg actattcata gatacctaat       480
     gtatggatta catttcgaaa tatttcaata tggattattc acttataatt agaattcatt       540
     agaaaacaaa tgaacatgga ttgtttgtgg acatattctg tatggattac agttcaagga       600
     aaggcataac taacctgaat taaccggaca ttgactgttc atggaaactt aatgtatgga       660
     ttacattttt gagatagttg aatatggatt attcagttaa agcttatgta tggattactc       720
     ttatggacat ttcctgtatg gattacagtt taagaaagga catcactcaa ctgaatatgg       780
     attattcaga acagtaccct atatggatta taggatgtaa acgctatgtt tacggttacc       840
     aaatattgag catggattgt tcattaagta attgatagtt actgtatgga ttacagaatt       900
     caaacaaggt atgtttatgg agtacttagt taagcatgga ttgctaaagc ttttgtgtgg       960
     atcacataac tgaaatctca agtactttgt atttagttaa ataaatgaga aaaataaaaa      1020
     gaaggaaaac aaaagaaaaa aatgttcaat ttcaaatcat ttgattcaag ttctgaaagt      1080
     atatgacagt gctatggtgt tttctctttt gttaatgtct ttagatggaa gacagtcgtc      1140
     cagttcctcc gttccgatgc gacgacattg agaaaaatag gctgcacaaa gagtggagaa      1200
     tttggaaagg ggcattagaa tgctattttg acgcgtatga tgtgatagat cagaaaaaga      1260
     aacgagccaa actattacat tttggtggac ctcagcttca gcgagtattc ctgaatctcc      1320
     cagaacgtga aaagtttcct ttggtgtcca ctgaaaagca atggtacgac gtcgcgataa      1380
     acgctttgga tgggttcttt caaccttgca agcaggattg ccttgagcga cacagattga      1440
     gaaacatgaa acaaaagcag ggcgaaaggt gaagttgttt taaaatgacg attgaacgta      1500
     aaatactaat taaataaata aaaatttagt tttgctgact ttgtgctccg ccttcgtcaa      1560
     caagctagtg actgtgggtt cgacaaatat ccagaagaaa caagagatgt tcttacggaa      1620
     atttttctga ctgatgtcat catagaaggc tgtttgtctt ccgagcttcg tcgtcgcatt      1680
     ctccaacagg atcgatcttt ggttgagatc gaagctcttg gtgctgctct agaaggtgtc      1740
     gaaaatcaaa tacaagattt tggagataag tcagggaatc aaaccagtgg tgatcacaag      1800
     gtccttgaaa ttaacagcaa accgatggtc gcattcggca agcgttttga tcaacatccg      1860
     aagaagtttt cagcgaaaag aaagtttcca ttcaaccaaa gcgaacttgg ttgtcttaat      1920
     tgtggccatc gagatcatca aactcacgac acagcgtgtc cagcaagagg taagctctgc      1980
     tatacctgca agcgagtcgg tcatttcgga tcacgatgcc gattccggaa attcaaagag      2040
     aagcatacga ttcctagtaa agtgcgaatg attgagccac aacaatctcc gtcaactcca      2100
     gacgcatccg gagacacagg tgtaggaaaa acgtactatg ccttttactc aggaaacgaa      2160
     acaaacgtaa tcgaatgcgc tattggtgga gtgaaattag atttgctgat tgattctgga      2220
     tcagatgcga atcttattac agacgaagca tgggaatcgt tgaagcaagc gaaggtggtt      2280
     gtccatcaga gcaccaaagg aagctcgaaa gttctgaaag gttatgcaag tgatcgtcca      2340
     ttgccaataa taggaacatt tgtggccgag ataatagccg gcgagcgttc agcacgagca      2400
     ttgttttacg tcatcaaggg tggtcaacgt tgccttcttg gcgatcaaac ttccaaggat      2460
     cttggtattt tgaaggttgg attggacatt caaaacgttg cagctcaaat cataccgttc      2520
     tcgaaaataa aggccattca agttcaagta catgttgatc cggctgcaaa gcctgtgttt      2580
     cagccgctaa gaagggtacc cattccactg gaggatgcag tcaataggaa attggagcag      2640
     ctattggcca gagacattat tgaagtcaaa gatggtccgg cttcgtgggt ttctcctttg      2700
     gttgtggtgg gcaaaagcaa cggagaacca agattatgtc tagatttgcg acgtgtcaac      2760
     gaggccgttc tcagagaacg ccaccccatg cctacagtgg acgatttttt ggcaagactg      2820
     gggaaaggaa aatgttggag caaattagac atcaaagagg cgttcttaca aattgagctt      2880
     gcaccggagt ccagagacgt gaccaccttc attaccagta agggtcttta cagatttaag      2940
     cgacttcctt ttggtctagt aacagcacct gaactattcc aaaaaaccat ggaccaaatt      3000
     ctgaccggat gtgaaggcac ttactggtat ttggacgatg tgtttgttga gggacgtgac      3060
     cgtgaagaac acgataaacg attggaagag gtatgaattt ttaagtcagt ttggagtttt      3120
     tctttttaat ggattgaata aagaaatgca catgaattat ttatatttgt ttctataggt      3180
     acttcgaaga ttcaaggagt ggaatgttga actcaattgg gagaagtgtg tttttcatgt      3240
     gaacgaggtt gagtttttgg gtcacaaatt aactgaaaag gggatacatc cctcagattt      3300
     gaaaaggaac gcaataatgt cctttcgacg tcctgaaaat gaagcagaag tgcgtagttt      3360
     cttggggcta gcaaactacc tcaacaagtt cataccaaat ctagctacgc ttgatgagcc      3420
     tttgcgtact ctgttgaaga agggaactaa gtttgaatgg aacgagagtc accaaaaatc      3480
     attcgaaaac gtcaaaattg ccattgcaga agctcaagag cttgggtttt tcaataaact      3540
     caaccaaact tcagtgatgg cggatgctag tccgtttggc ctgggggcta tattgatgca      3600
     aaccgatcaa gctggcgaaa gtcgagtgat aagctgcgcg tcaaagtcat tgacagatac      3660
     cgaaaagcga tactgtcaaa cagaaaagga agcgttagct attgtatgga gtgtagagcg      3720
     attccaagca tatttatatg gcagtacgtt caatatactg acggattgta aggctctaga      3780
     gttccttttt accgaccgtt cgagaccatg tgccaggatc gaacgttggg tcctacgtct      3840
     tcaggctttt gattatcgcg ttgttcacat acctggtgaa aaaaatcttg cagatgtatt      3900
     atcccgcctc gcatcattgc ctgctgtgcc attcgatcgt gatgacgaac ttatgataaa      3960
     gaacatcgcc ttgtgttctg ctacaaccgc agcattgaaa tgggatgaca ttgtacgaga      4020
     aacgaaaaag gatgctgaaa tccagcaggt tctagaatgt ctaggaaacg catcgatcca      4080
     ggaattgccc ttacagtatc gggtcgtagc aaatgagctg tgccgctgtg aagacatttt      4140
     actacgaact gatcgaattg ttattcctca atctttgcga gagaaagtgc ttcagattgc      4200
     tcatgagggt cacattggaa ttcgaatgat gaaactgcat cttcgaagtt ctgtctggtg      4260
     gcctaaaatg gacgcggcgg tggaatcgtt cgttaaaaag tgtcgtggat gtattttggt      4320
     ttctgcaccg gagcccccag aaccaatggt acgcaaagaa actccaaatg ggccctggca      4380
     ggagattgcc atagatttcc ttagaccttt gccggacgga caaacgttgc tggttgtagt      4440
     tgactattac agtcgttata tcgaagtttg tgaaatgaac cagaccacta ccagagaaac      4500
     aatcaatcaa ctgtcgacga tattcagccg attcggagtt ccactaacac tgcgagctga      4560
     taatgggcca caatttaatg ccagttgcga ggagtttcaa gcattctgtg aggatttggg      4620
     ggtgcagttg attaacacca ttccttattg gcctcaacag aacggagagg tcgagcgaca      4680
     gaatcgatcg attctcaaaa ggttgaagat agcgcaacaa cttggacaag attggaggca      4740
     aattttagca caatttctgt tatcttatca tgcaacacct catccaacaa ttggacgcgc      4800
     accttcggag ttgatgttcg gcagaagaat tcgaacgaaa ctaccagaag taccaatttt      4860
     cactcgagtt aacgaagaac atcgagatca tgataccctt cagaaagaaa aaggaaaaga      4920
     atacgcagat gggaaacgaa aggcacgatt cagtgaaata tcagtaggcg atcgtgttct      4980
     agtaaaaagg atgcgaaaag ataacaaatt gagttccaat ttcgctcccg aggaatacgt      5040
     tgtaacaaga aaaattggag cagattgtac agtaaaagca cttgaaaatg ggaaagaata      5100
     ccgccgtaat gtagcgcatt tgaaaaagtt gctggatgat attggtgatt cgtcgaaaac      5160
     aggagagtct agcttgaaag aaactacaac agcgccatcg aactccggca atactgaagt      5220
     atctacaaag acctcatcag cgatgacgga accggattcg caagaggaca tacagagaag      5280
     tgttaaacga aaccataatg tacccgttaa gtttaaagat tatctatccc actaagtgtc      5340
     tctaaaacat tgttattgta aaaggggggt                                       5370
//
ID   Gypsy-199_AA-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   supercont1.68;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-199_AA_;
KW   Gypsy-199_AA-I; Gypsy-199_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.68; Positions 1932729 1932925.
XX
SQ   Sequence 197 BP; 57 A; 28 C; 56 G; 56 T; 0 other;
     tgtagggttt tccccttgaa tgcagccctg ataaaatata gaagtgaact cctaaatagg        60
     gccctgggtg gattgacagg gagacgggag aatgtgtatc gtgccggtga gaaacggatg       120
     tgggaaatcg ttgtgcatat tttgaacagt gaaataaagt gataattgtt gcagatattg       180
     agtgtttcat tcctaca                                                      197
//
ID   Gypsy-19_AA-I repbase;    DNA;    INV; 4522 BP.
XX
AC   supercont1.227;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_AA_;
KW   Gypsy-19_AA-LTR; Gypsy-19_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4522
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.227; Positions  681661  677140.
XX
CC   Positions [3453-3971] - Integrase core
CC   'TCTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           231..4496
FT                 /product="Gypsy-19_AA-I_1p"
FT                 /translation="MNSEQFSMFMQHQSGVFKEMVNALRQIGAPQQVVQQP
FT                 VEKAAALPVPLPPPLQLEGDMEQNFEFFVQNWQNYVSAVGMDQWPPEQNRQ
FT                 KTSVLLSVIGKSALKKYFNFELTNEQQQDPDAAIAAIKLKVVRERNKIVDW
FT                 YDYFSIMQEVQENIDEFVTRLKSLAKLCRFGALEEEFVMYKVVTSNKWPRL
FT                 RAKLLTTQNLTLVKAIDVCRAEEITEKHVASVGQSSGDVNMVKKKKKMKCK
FT                 YCGDWHDFSKGSCPALGKKCRGCGGRNHFEKVCRADGKKKNKERKVKKVKD
FT                 GSFSSTSQSEDSDSSETESEEEVVIGKVYDFSDAGGNVLADLEMFVGDKWQ
FT                 SVRCELDTGANTSLVGVDWLKKAAGGVCPELLPSKYRLQSFGGASIPVLGE
FT                 VRIPCRRSDCKYTLALQVVNVNHMPLLSAKVCKKLGFVKFCHSVVLQPPKS
FT                 EQDLLNIYRIKAEQIIHQHKQLFEGYGKFSGVVSLEVDPDVVPSVQQPRRV
FT                 PISMRELLKDELKKLERDGIIVKETQHTDWVSNIVLVKRSGVEGSVRICLD
FT                 PIPLNKALKRPRLQFTTIDEVLPELGRAKVFSTVDLKKGFWHILLDEKSSR
FT                 MTTFWTPFGRYRWTRMPFGIASAPEIFQVKLQEAIQGLKGVECLADDVLVY
FT                 GTGENMKEALDDHNRNLKELCVQLEKNDIKLNSSKLKLCETSVKFFGHVLT
FT                 NQGLKADEGKITTIKEFPTPTDRKQLQRFIGMVNYLGRYIKNLSAESTILR
FT                 RLISEKEPWTWTATEEDEFRRMKSIVADVKTLQYYDVKKPLVVECDASSFG
FT                 LGAAVFQEKGVIGYASRTLTATEKCYAQIEKELLAILFACVRFDQLVVGNP
FT                 KTIVRTDHKPLLAVFRKPLLSTPRRLQHMLLSLQRYNLELQFVTGRDNVVA
FT                 DAISRAPLNEKHCEDHFEKRNIYHIFKDVQTINMSNYLSITDERLNEVITE
FT                 TKTDPAMQMIMQYISQGWPSSCDKVPDAVKVYFKHRNELSSQDGIVFRSDR
FT                 IVVPQSLRKKLTEKVHLSHNGIEATLKLARANLFWPGMSWQIKEAVMQCGI
FT                 CAKFAPSQPSPPMKSHAIPVHPFQVVSLDVFFAEYRGDKKKFLVTVDHFSD
FT                 FFEVDILKDLTPKSTINICKINFSRHGKPQLVITDNGTNFVNADWRQFAQD
FT                 WDFRQSTSAPHHQQANGKAEAAVKIAKRLLQKSKESGVDFWYALLHWRNVP
FT                 NKIGSSPVVRIFSRSTRCGIPMSAENLIPKPQTGVSEAIENNRRKAKYHYD
FT                 KKSRNLPTLEVGDPVYVQLQPESSKQWTPANISSKLNERSYVVDVDGARYR
FT                 RDLVNIKPRNEPSVTPSQPLMNVASAPVEVSAPLGLPDKPADLSSYSAIDN
FT                 SAMSQEEISETSQDIVVSPTISESPKKASRKLNHLPTETMTRPKRTMRLPS
FT                 RYRDYDMN"
XX
SQ   Sequence 4522 BP; 1369 A; 879 C; 1149 G; 1125 T; 0 other;
     tggtgtcaga agccatcgtg gtgttctgaa agtttattcc ggcgtcatcg tcaatatcgc        60
     ggaagtgttt gggcgaggaa aaaaacgaac tgaggcagtg aaagaatcat tcgcggtgtt       120
     cgatttttcg ggagacagtg tgaacgtgtc gaaacttgct tggcggccat atttcttttg       180
     ctgtgctggc ttcgtgtgat tttcccaaaa gtgctgaaaa ctgtttcaga atgaattccg       240
     aacaattttc aatgttcatg cagcaccaaa gtggtgtttt caaagaaatg gtgaatgcgt       300
     tgcgccagat aggtgctccc cagcaagtag tgcagcagcc ggtagaaaaa gcggcagctc       360
     ttccagttcc ccttcctcca ccgctgcaac tagagggaga catggaacag aattttgagt       420
     tttttgtgca aaactggcaa aattatgtca gtgcggtggg aatggaccag tggcctccgg       480
     aacaaaaccg gcagaaaaca agtgtattgt tatcagtgat tggcaagtcg gcactaaaaa       540
     aatactttaa ttttgagctg acaaacgagc aacagcaaga tccggatgcc gcgattgcgg       600
     ccattaagtt gaaggtggtt cgcgagagaa acaaaatagt tgactggtac gactactttt       660
     cgataatgca ggaagtgcaa gagaacatcg atgaatttgt aactcggttg aaatcactag       720
     caaagttgtg tcgtttcggt gccttggagg aagagtttgt gatgtataaa gtggtaacct       780
     ccaataagtg gccaaggcta cgagcaaaat tattgacgac ccagaatctc acgttggtga       840
     aagcaatcga tgtgtgtcgt gcggaagaga ttacagagaa gcacgtcgcg agtgttgggc       900
     agtcaagtgg tgatgtgaac atggtaaaga agaagaagaa aatgaagtgc aaatactgcg       960
     gcgattggca tgacttttcg aagggttcgt gccccgcatt ggggaagaaa tgtcgcggat      1020
     gcgggggaag aaaccacttc gagaaagtgt gtagagcgga cggtaagaag aagaacaagg      1080
     agaggaaagt gaaaaaagta aaagatggta gcttttcgag caccagtcag agtgaagaca      1140
     gtgacagttc ggaaacggag agtgaagaag aagttgttat tgggaaagtg tatgattttt      1200
     ctgatgctgg aggaaacgtt cttgcggatt tggagatgtt tgttggtgat aaatggcaat      1260
     ctgtgcgctg tgaactggac accggcgcaa atacaagtct ggttggagtt gattggctga      1320
     agaaagcagc aggtggagta tgtcctgaac tgcttccatc aaagtaccgt ctacaaagct      1380
     ttggaggagc ttcgattcca gtacttggtg aggtccgaat tccttgtcga cgcagcgact      1440
     gtaagtacac gctggcgttg caagttgtaa acgtcaacca tatgccactc ctgtcagcaa      1500
     aggtatgtaa gaaacttgga tttgttaagt tttgtcattc agtggtgctt cagccaccaa      1560
     aatcagaaca agatctcctc aacatttatc ggatcaaggc agaacaaata attcaccagc      1620
     ataagcagct ttttgaagga tatggaaaat tttctggagt tgtttcattg gaagttgacc      1680
     cggatgttgt cccgtctgtt caacaacccc gacgtgttcc aatttcgatg cgcgaacttc      1740
     tcaaagatga attgaaaaaa ctggaacgag atggcattat tgtgaaggaa actcaacaca      1800
     cggattgggt tagtaacatc gttcttgtta aaagaagcgg tgttgaagga tcagttcgta      1860
     tatgtttgga cccaattcca ctcaacaaag ccttgaaacg tccccgtctt cagtttacca      1920
     ctattgatga agttttgcca gagctaggac gagcgaaagt gttctctact gtggatttga      1980
     agaaaggttt ctggcatatt ctcttagacg agaagagcag tcgaatgacg actttttgga      2040
     ctccgttcgg acggtaccga tggacccgaa tgcctttcgg tattgcatcg gcgccagaga      2100
     tttttcaagt taagctgcaa gaggcaatcc agggattgaa aggagttgaa tgcttagctg      2160
     atgacgtgtt agtttatgga accggagaaa atatgaaaga agcgttggat gatcataatc      2220
     ggaacctgaa ggaattgtgt gtgcaattag agaaaaatga catcaagctg aattcgagta      2280
     agttaaagct ctgtgaaaca tcggtaaaat tcttcggaca tgttctgaca aaccagggct      2340
     tgaaagcaga cgaaggtaaa attactacca ttaaggagtt tccgacacca acagatcgca      2400
     agcagctgca gagattcatc ggcatggtca attacctcgg gcgctatatt aaaaatctca      2460
     gtgcagagag tacaatacta cggagattga tttcggaaaa ggaaccttgg acgtggacgg      2520
     caacggaaga agacgaattc cggcggatga aatcgatagt tgcagatgtt aaaacattgc      2580
     aatactatga tgtcaaaaag ccactggtgg tagagtgtga cgcaagttcg tttggattgg      2640
     gcgctgcggt atttcaggag aaaggagtca tcggttatgc atcacgaacc ctgacagcaa      2700
     cagagaagtg ttatgcgcag atcgagaagg agttactggc aatactattc gcgtgtgtac      2760
     gatttgacca attagttgtc ggtaatccta agacaatagt aagaacggat cataaaccac      2820
     tgttagctgt cttccgaaag ccgttgctct cgactccgcg tcgtttgcag catatgcttc      2880
     tgagcttgca gaggtacaat ctggaattgc agttcgtcac agggagagac aatgtggtcg      2940
     ccgatgctat atcaagagcg ccattgaatg aaaagcattg tgaagatcac ttcgagaagc      3000
     gaaacatcta ccacattttc aaagatgtac agacgatcaa tatgagcaat tacctcagta      3060
     ttaccgatga acggctgaac gaagtaatta ctgaaacaaa gactgaccct gcaatgcaga      3120
     tgatcatgca gtacatcagt caaggatggc cgtcgtcttg tgacaaggta cctgatgctg      3180
     taaaagtgta cttcaagcat cgtaacgaat tgagttcgca ggacggaatc gtgtttagga      3240
     gtgacagaat agtcgtgcca cagtcgttga ggaagaaact tactgaaaaa gttcatctca      3300
     gccataatgg cattgaagcc actttgaagc tggctcgtgc gaatttgttt tggccaggaa      3360
     tgagctggca gataaaggaa gcggtgatgc aatgcggaat ctgtgccaag tttgctcctt      3420
     cacaaccctc accaccaatg aaaagccatg ctatcccggt gcacccgttc caagtcgttt      3480
     ccttggatgt attttttgcg gaatatcggg gagataaaaa aaagtttttg gtaactgttg      3540
     accatttttc cgatttcttt gaggtcgaca tactaaagga cctaacccca aagagtacaa      3600
     taaatatttg caagatcaac ttctcccgtc atggtaaacc ccagttggtc ataacagata      3660
     acggaactaa ttttgtcaat gccgactgga gacagtttgc tcaagattgg gatttccggc      3720
     aatctacatc ggctccacac catcaacaag cgaatggtaa agcagaagca gcagttaaga      3780
     ttgccaaacg cctgctacaa aaatcaaaag aatccggtgt tgacttttgg tatgctcttc      3840
     ttcattggcg aaacgtaccg aataagattg gatcgagtcc cgtggttcga atattttctc      3900
     gaagtactag atgcggaata ccaatgtcag cagaaaatct aattcccaaa ccccaaactg      3960
     gagtttcaga agcaatcgaa aataacagac gtaaagcgaa atatcattat gataaaaagt      4020
     ctcgaaatct gccaactttg gaggtaggag atcccgtata tgttcagctt cagccagagt      4080
     catcgaagca gtggacgcca gcgaacatca gcagcaagtt gaacgagcgt tcctacgtcg      4140
     tggatgtaga cggcgcacgt tatcgccgag atctagttaa cattaagcca cgtaatgaac      4200
     catcagtaac gccttctcag ccattaatga acgttgcaag tgctccggtt gaggtatcag      4260
     ctcctttggg gctaccggac aagccagcag atttatctag ctactcggcg atcgataatt      4320
     cagcaatgag tcaggaagaa atttcggaaa cgagtcaaga catcgtggtg tcgccaacca      4380
     tcagcgaatc tcccaagaaa gcatctcgta agctgaacca tctaccgacg gaaaccatga      4440
     ccaggccgaa gagaaccatg agattgccga gccgttatcg tgattatgat atgaattaag      4500
     tttttaatca aaagggggaa ga                                               4522
//
ID   Gypsy-19_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   supercont1.227;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_AA_;
KW   Gypsy-19_AA-I; Gypsy-19_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.227; Positions  677139  676977.
XX
SQ   Sequence 163 BP; 44 A; 23 C; 38 G; 58 T; 0 other;
     tgttatatta ttatgtagtt tgtggttgct ccctctgagc gtaatgtttg aatgaccccg        60
     acgtgatgaa agagttcagt tgttacctgg ttgatcgaca gttcggatgt acaataaagt       120
     agagtttgta gcgaacggat ctttttattc ttgaaataaa aca                         163
//
ID   Gypsy-19_AnFu-I repbase;    DNA;    INV; 4520 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4520
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2904-2904 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..4518
FT                 /product="Gypsy-19_AnFu-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MYSPDENSGMDDPRRLSQNGANALNAAFTQRMHPPPQ
FT                 GAATQPQQPPSQHPGAASALAGPASQSPEFGMLYQMLQLMQQQMQQQQQQA
FT                 AQQQQMMAQLMQQLPPTASQPPAHQPTPPTDPELVINALAASITEFRYDAE
FT                 AGATFRAWYSRFEDLFVKDASRLDEPAKIRLLTRKLGTMEHERYANYVLPC
FT                 HPRDFTFDETVSKLKVLFGNVESLSSRRYKCLQTIKEKNEDLLPFSCRLNR
FT                 ACNDFQFSSMTEDQFKCLMFVCALREEVHNDIRTRLLTRIEDRPDLTLEQL
FT                 SAEGERLIGLKETTAMFASGREGKVHALHSAYKQRDAQKEKRDNNNNKQRR
FT                 PERSGADSPASKPPRPCWLCGDSHWVRDCSYSSHKCQDCGRYGHREGHCSK
FT                 SGRKRELTKFRKRTSVATRAVVVNVRSLQKRKYVSIRIGSKTAELQLDTGS
FT                 DITIIGRKTWKQLGMPRLSPARVHAKTASGSRLQLDGEFDANVTVNGTTKS
FT                 ATIRVVPMELQLLGADFVEIFSLGTLPMDEYCNRIGCESTKWESKFPAIFN
FT                 GTGLCTKASIKLHVKENVRPTFCPKRPVAYAMQATVEKELDRLEQLNVITP
FT                 VDYSDWAAPIVVVRKSNGSIRICGDYSTGLNSALQSYEYPLPLPDDIFARL
FT                 ARCRFFSKIDLSDAFLQVEIAAKYRPLLTINTHRGLYHYNRLPPGIKIAPA
FT                 AFQQLIDTMLAGLKGTSGYMDDVIVGGTTEREHDENLLNLFRRIQQYGFTV
FT                 RAEKCAFKMQQIEYLGFIIDRRGLKPNPAKIEAILKLPAPTNVSEVRSFLG
FT                 AVNYYGRFVPKMRDLRYPLDVLLKNETTFVWTRECESAFKRFKEILASDLL
FT                 LTHYDPNAEIVVSADASAVGLGATISHKFPDGSLKVVQHASRALTTAENKY
FT                 SQIDREGLAIIFAVKKFHKMLYGRHFRLQTDHRPLLRIFGSKKGIPVYTAN
FT                 RLQRFALSLQLYDFSIEYVPSTQFGNADLLSRLISEHAKPDPEYIIASTEL
FT                 EQDVSYVATQSIKVFPLNFRDVASATRADPILRQVLRYVLQGWPKNYAYGQ
FT                 ELARFFNRSEALSTVRGCILFGERVVIPTKLRHRCIKQLHEGHPGMQRMKE
FT                 LARSYVYWPGMDEDIVECVRTCHACAVAAKTPPHAKPVPWPTTKHPWERIH
FT                 VDYAGPIEGDYFLVAVDAYTKWPEVIKTSSTTTPATIAILRNLFARFGFPV
FT                 TLVSDNGPQFTSATFDEFCAKSGIQHIKSPPFHPQSNGQAERFVDTFKRSI
FT                 RKIEEGGASRGEALEIFLQTYRASPNPALEQHRSPAEVMFGRKIRTALELL
FT                 KPPPTPEVERERRDHRFQRNELVYAKWYTRNSWKWVPAKVNRPIGDVMYEI
FT                 ETNDHRTHRRHLNQLRKRTETKGPHRSNTLADSYQLPLDFLVETSHNDEQA
FT                 VSAGGTVEPSVPSPHLPSPRPVPFVPRRHQQPVRSPRRSSRSRRLPRRLEG
FT                 YQLQTKRG"
XX
SQ   Sequence 4520 BP; 1289 A; 1155 C; 1127 G; 948 T; 1 other;
     gtggcgacga ggaaaacgga aaaaaaatat aggaactata aacgaaaaaa agtgttatag        60
     tgcaattatt cgcgtgtgca taattccgcc gcagcaacaa tgtatagtcc tgatgaaaat       120
     tccgggatgg acgatccgcg ccgattatca cagaacggcg caaacgctct gaacgccgcg       180
     ttcacgcaac gcatgcatcc accgccgcaa ggtgcagcga cgcagccgca gcaaccgcca       240
     tcgcagcatc caggcgcagc gtcagccctg gcaggaccag cgtcacaaag tcctgagttt       300
     gggatgctgt accaaatgct gcaactaatg caacagcaaa tgcagcaaca gcagcaacag       360
     gcggctcaac agcagcagat gatggctcaa ctgatgcagc agcttccccc aacggcatct       420
     cagccccccg ctcaccagcc cacaccgcca accgatcccg agctggttat aaacgcccta       480
     gcggcaagca tcaccgagtt tcgctacgac gcagaagctg gtgccacatt tcgcgcgtgg       540
     tactcgcgat tcgaggatct gttcgtgaaa gatgcttccc ggctcgatga accagcaaaa       600
     atccgcctgc taacccgtaa gttgggcaca atggaacacg agcgttacgc caactacgtt       660
     cttccctgcc acccccgcga cttcacattc gatgagacgg taagcaaact gaaggtgctt       720
     ttcggaaacg ttgaatcgct tagtagtagg cgatacaagt gccttcagac gataaaggag       780
     aagaacgagg atctgcttcc gttctcttgt aggttaaatc gtgcctgcaa cgatttccaa       840
     ttctcctcaa tgaccgagga ccaatttaaa tgtctaatgt ttgtttgtgc tttaagagaa       900
     gaagtgcaca acgacatacg aacgaggctc ctaacgcgca tcgaggatcg accggatcta       960
     accctggaac agctttccgc cgaaggcgaa cgattaatag gtctaaaaga gactacggcg      1020
     atgtttgctt ccgggagaga gggcaaagtt catgctctac acagcgcgta caagcaacga      1080
     gatgcgcaga aagagaagag agacaacaac aacaacaagc agcgtcgtcc cgagagaagt      1140
     ggtgcagatt ctccagcatc caaaccaccg agaccgtgtt ggttgtgcgg tgactcccat      1200
     tgggtgagag attgttctta cagctctcac aagtgtcagg attgtgggag atacggtcat      1260
     cgcgagggtc attgcagcaa gtcgggtcga aagcgggaat taacgaaatt ccgcaagcgc      1320
     acttcggttg caacacgtgc agtggttgta aacgtccgta gcttacagaa gcgcaaatac      1380
     gtgagcatcc gaataggcag caaaacagcg gaactgcagc tcgacacggg gtcggatatc      1440
     acgataatag gacggaaaac gtggaagcag ctcggcatgc cacgactatc gccagcaaga      1500
     gtgcatgcga aaacagcatc cggttcacgc cttcagctgg atggcgagtt tgatgcaaac      1560
     gttacggtga acgggacgac aaaatcagca acgatccgcg ttgttcctat ggagttacag      1620
     cttttaggag cagattttgt cgaaattttc tcgctgggaa cgttgccgat ggacgaatac      1680
     tgcaacagaa tcggttgcga gtctaccaaa tgggagagca aatttccggc tattttcaat      1740
     ggtaccgggt tatgcactaa ggcaagcatt aaactgcatg tgaaagaaaa cgtccgtcct      1800
     accttttgtc ctaagcgccc tgtggcttat gctatgcaag caacagtaga aaaggagctt      1860
     gatcgtttag agcaactcaa cgtcatcacg ccagtcgatt attccgactg ggcagcgccc      1920
     atcgtagtcg taagaaaaag caacggcagt atcagaatct gcggagacta ctcgactgga      1980
     ctgaattcgg ctctccagtc atacgaatat cctttaccgc tcccggacga tatatttgct      2040
     aggctggcgc gttgcagatt tttcagtaaa atcgacctct ccgacgcatt cttacaggtc      2100
     gaaatagcag ccaaataccg ccccctattg accataaata cgcatcgtgg cttataccac      2160
     tacaatcgcc taccacctgg tatcaaaata gcgccggccg cttttcagca attaattgat      2220
     accatgctcg caggattgaa aggcacatca ggttacatgg atgacgtgat cgtaggtggt      2280
     acaacggaac gcgagcatga cgaaaatttg cttaatcttt tccgcagaat acaacagtac      2340
     ggattcacag tccgcgcgga aaagtgcgct tttaaaatgc agcaaataga atatctgggt      2400
     ttcatcatcg atcgtcgtgg cctcaaacca aacccagcga agattgaagc tattctgaag      2460
     cttccagcgc caacaaacgt aagcgaggta cggtcattct taggcgcagt taactattac      2520
     ggaaggttcg ttccgaaaat gcgcgaccta aggtaccctc tagacgtcct attaaagaac      2580
     gaaaccacat tcgtatggac tcgcgaatgt gaaagcgcat tcaagcgatt taaggaaata      2640
     ttggcatcgg atctgctact tacacattac gacccaaatg ccgaaatagt agtatctgct      2700
     gacgcttcag cagtgggact tggtgctacc ataagccaca aattyccaga tggctcatta      2760
     aaagtagtac aacatgcctc gagggcactt acgacagcgg aaaataagta cagccaaatc      2820
     gaccgtgagg gtctagccat catttttgca gtgaaaaagt ttcacaaaat gctgtacggt      2880
     cggcattttc gtttgcaaac tgatcatcgt ccgctgctca gaatctttgg atcgaagaaa      2940
     ggcataccgg tttacacggc taatagactg caacgtttcg cgctgtcctt gcagttgtat      3000
     gatttcagca tcgagtatgt accatcgaca caattcggaa atgctgatct gttatcgagg      3060
     ctgatcagcg aacatgcgaa accggacccc gaatacatca tagccagcac tgagctcgag      3120
     caggacgtaa gttacgttgc aacgcagtca attaaagtat tccctcttaa ttttagagac      3180
     gttgcgtccg ctacaagggc tgacccgata ctacggcagg tacttcgtta cgtcctgcaa      3240
     gggtggccta aaaactacgc ctatggacaa gagctggcgc gattcttcaa tcgaagcgag      3300
     gcgctatcca cggtacgtgg atgcattttg ttcggggaga gggtggtcat acctaccaag      3360
     ctgcgtcaca gatgcataaa gcagttacac gagggccacc caggtatgca acggatgaaa      3420
     gaactagccc gcagttacgt gtactggccg ggcatggatg aggacatcgt ggagtgtgtt      3480
     agaacgtgtc acgcatgcgc ggttgccgcc aaaacacctc cacacgctaa gccggtaccc      3540
     tggcccacta caaaacaccc atgggaacgc attcacgtcg attacgcggg accgatcgag      3600
     ggtgattatt ttctagtagc agtcgacgcg tacacgaagt ggccagaggt aataaagacg      3660
     agcagcacca ccacaccggc aacgatagca attctacgaa acctattcgc aagattcggg      3720
     tttcccgtga cgctagtaag tgataacgga ccgcaattca ctagcgccac gttcgatgaa      3780
     ttctgtgcta agagcggcat tcagcacata aaaagtccac cgtttcatcc tcagtccaac      3840
     gggcaagccg aacgatttgt cgatacgttc aagcggtcta taaggaaaat cgaagaaggt      3900
     ggagcgtccc gtggcgaagc actcgaaatt ttccttcaaa cgtaccgagc atcccccaat      3960
     cctgctttgg agcaacatcg gtcgccagcg gaggttatgt tcgggaggaa aattcgaaca      4020
     gcactggagc tgttaaagcc accgcctaca ccagaagtag aacgagaaag acgagatcat      4080
     cggttccagc gcaacgagct cgtctatgca aagtggtata cgcggaactc atggaaatgg      4140
     gttcccgcaa aagtgaatcg accaatcggt gatgtcatgt acgagatcga gacgaatgat      4200
     caccggacac accgccgcca cctaaaccaa ttgcggaaac gaacggaaac gaagggccca      4260
     catcgatcga acacgctagc ggatagctac caacttccgc tagatttcct cgtggaaaca      4320
     tcacacaacg acgaacaggc agtgtctgct ggaggcactg tggaaccatc tgtaccttcc      4380
     ccacatttac catctcccag gccggtacct tttgtaccaa gacgacatca gcagccggta      4440
     agatcgccac gcaggtcttc taggtctaga agacttccgc gtaggctcga ggggtaccag      4500
     ctgcaaacta aaagggggag                                                  4520
//
ID   Gypsy-19_AnFu-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-292
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2832-2832 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 292 BP; 81 A; 57 C; 76 G; 78 T; 0 other;
     tgttatggtc caacctttcc tcggtagatc tgtcacctaa actcaccact gacagaaacg        60
     gtcagtggtt gatgtgttag tgagatctac cgagaggtca gggttcgcga gcgaagggtc       120
     acttcgggtt agggctccgg cgcgaaaaga tcgaagagcg tgtttagacc gaaccgaggc       180
     gtgcgcgtcc aaatgtatcg taacgtgtgt aatatataat tgttaattgt ctttaaatgt       240
     ccgtgtcgtt cttaacgtct tctaaacgtg acgaaagaaa aagaatataa aa               292
//
ID   Gypsy-19_AnMe-I repbase;    DNA;    INV; 5680 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5680
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6831-6831 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1600..2499
FT                 /product="Gypsy-19_AnMe-I_1p"
FT                 /translation="MEENWPLQPFNESVDASDLRREWEEWHRAFELIIMLK
FT                 KINTQDEKLAYMLARGGRGLQRIYFNLAPVSGEEQPSPAVIPFQQPQVPEY
FT                 DNAIKRLNHFFLGKRNERIELELFRSLKQENEESFNQFVLRLRTQAARCDF
FT                 HERIVKEIAHQITVGAKDERVRDKGLENTMELDELINYAINREILIGQKMK
FT                 IKDKEQESSIAYVKSMPVTEKRKWRESSCYRCGSWRHSGDSSECYARKARC
FT                 NSCGRVGHFGRVCKKDGRNSVKNNYQWKRAKNEPTDRREQNQRNEANEKDS
FT                 LNEVLYHN"
FT   CDS           2559..5594
FT                 /product="Gypsy-19_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IFTTTRLLDNGMVKCMLDTVHVVFLIDSGASVNTVTE
FT                 QVWLELQKSKANIQDISYNCDKQITTYASNQPLKLILKFKAVISINQSKPT
FT                 TFAEFIVVQGSNKSLLGKVTAEELKVLKVGLEVQNIEERCQPFPKFPGIQI
FT                 RLSINKEVPPKKISYVRIPIALEKKVESKIQQMLETDIIEPVDGPPEWISP
FT                 MVVVPKGKDDIRICINMKYPNQAIQREHFPLPVIETLLNKLQGCKIFSKLD
FT                 ITSAYHHVELHPDSRGITTFMTNKGLMRFKRLMFGINCAPEIFQRIMTQML
FT                 LGIAGVVIYIDDIVIAGKDKVEHDSRLKQVLEILGKNNATLNKDKCSIEVK
FT                 ELEILGYNISASGIGPTEAKIEAIKNFRKPITKEETRSFLGLVNFVGQFIH
FT                 HLSSRSEPLRKFIRGEIEVFGKEQEAAFDDLRLELSNNVRKLGFFKPEEDT
FT                 ELYVDASPTGLGAVLTQRNKKGMSRIISFASKGLTKPEKVYPQTQREALAV
FT                 VWAVEKFYPYLFGTTFTIFTDHKTLEYIFEGKHQSGKRACSRAEGWALRLQ
FT                 PYNFVVKYIPGSSNISDSLSRLCPNSDKDKSFDEASEHYVYTIESESEAIT
FT                 LNEIKAETDKDETMREVIKAIENQSWKPKLAHYQAFSKELGIVQGIVVRDD
FT                 RLVLPEKLRQKALKIAHIGHPGEETMKRKLRERMWWPYMDREITCFVKACA
FT                 GCAAVRPLGHAEPMIRKEMPDRPWQDIAIDFFSVKEYGTFLVVVDYYSRFI
FT                 KIIEMKITSASKTIEALETICKDQSYPESIRCDNGPPFSSEEFKNYFKRKD
FT                 IKIIHTIPYWPQMNGLVERNNRGILRALRIAKAEKTDWREAIIKYENMYNT
FT                 TPHSITGKAPLELLTGRPIKGLLPSLRTTEVWNRDSEVKERDAIKKMKGKL
FT                 YADRSRKSKQSGIKVGDRVRVWHYQQGKSEPNYGIEIFKVLRKVGNDTVVV
FT                 SSAGVKYRRPVAHLSKVCDEETQQNNTISTQHKQQQKDKKEFKRPTRIRKI
FT                 PNRYND"
XX
SQ   Sequence 5680 BP; 2068 A; 842 C; 1275 G; 1495 T; 0 other;
     attggcgcag ccggtagtga aaattttgtt aaaataaagg aaaggtatat acaatggaag        60
     atcggattta tccgaagtac tgtgaagttt tcaaaagcgt aatagttggt taaaagtgag       120
     cttcaattaa catagtgtaa taccataata gcgatacacg aagtgaaagt gagttatgag       180
     accggcaaaa gccgcagcac gcaaaaaaaa aaaaaaaaga agttggaaat ccgtagcata       240
     aattgagacc ggaaagtcaa tacgatgtta aattgagtcc gttaaaacgt aatagtgaga       300
     gagattggat catgagaccg gcaaagccgc agcatgtaca aaaagttgaa aatccgtagc       360
     acaaattgag accggaaaac tagtactata atgggttgag tccgttaaac gtagcgccca       420
     aatgaatcca gaaataattt ctgtagcaaa atatgggacc ggttgaatcc gtagcataaa       480
     acgagtccgg gaaaaccgta gctaaattga agttaaggcc ggtgaaatac cgaagtaact       540
     aaaagagtcc ggggtttccg tagcaaaatt cgtgaggccg gtcttatccg cagcaccaga       600
     aaaaagggag ggaaaagggc cgtgaagtta tgttagaaag tgatgaagcg aatgaaaatt       660
     agtattgcgt tctaatgaga cgacaaaaag gtggaattaa ccgtgattga aataatatga       720
     aaaacaaata agttggaatt ggtggcaatc gtgcgtgtgt aagtgagttg aaaaagagtt       780
     aaaaaaaata tatatatata tattcacgta tgcatccaca ttataccagt ggaataacct       840
     acaatacaaa agaggagaat acatttcaac ggaaacaaag aagtggtaga actgagttga       900
     aattcgaaga aagataagac aatgggtcaa aaccagctgc tgctgccgag tcgtgtgtgg       960
     tcgaatatgg tggtaaagaa gacaaagaat aaaaaaagag gaggagaagc cggtgacaaa      1020
     ataactagtg caaaacaaac tgcggtaaac accttggtgc caaaatctgg atgacaggga      1080
     ataggaagaa aagaagaaaa gcggcacgtg cggtacaaag gaactgtgaa gtgtgttgga      1140
     taagaacgtt ggagacagat aacaaaagaa cattaataat gtatcaattt tggacacagt      1200
     cttttgtact ggcttgtcat ttgggaataa tcagataaat ctgggaacag ttttacgatg      1260
     tgtgttcttg gacacattat gtgtgttttg aggatatgtg tgtatgcgtg tgcatgtgcg      1320
     gatgtgtgag tgtatggatt tcgtgaataa tttattttat cttgtgtgtg tgtgtgtgtg      1380
     tgtgtgtgtg tttttttttc tgctccccat gcttatagcg gttaaaaaaa aaaaaataat      1440
     aatttttttt ttcatgggat tagttattgt ggcataaaga cagtaaaaat ggattttcct      1500
     tttatttatt tatttttttc tttcttttgg tttttgttaa agttattttt atttaaggta      1560
     tccttttatt tttttatttt ttttctcgtt gcattgtaga tggaagaaaa ttggccattg      1620
     caaccgttca atgagtcggt ggatgcttcg gatttacgcc gtgagtggga ggagtggcac      1680
     cgagcatttg agctaataat aatgcttaaa aagatcaata cgcaagatga gaagttggcg      1740
     tacatgctgg cacgtggagg tcgaggattg cagagaattt acttcaattt ggctccggta      1800
     tcaggagaag aacagccaag tccagcagta ataccctttc agcaaccaca agttccggag      1860
     tacgacaatg ctattaaacg tttaaatcat ttctttttgg gaaagagaaa cgaacgcatc      1920
     gagttggagc tttttcgttc tctaaaacaa gaaaatgaag aatcgttcaa ccagtttgtg      1980
     ttgcgactaa ggacacaagc tgcacgatgc gatttccacg aacgaatagt aaaagaaata      2040
     gcacaccaaa taactgtagg agcaaaggat gagcgagtaa gagataaagg gttagaaaat      2100
     acgatggaat tggatgaact cattaattac gcaatcaata gagaaattct gataggccaa      2160
     aagatgaaga tcaaggataa ggaacaggaa tcatcaatag cgtatgtaaa atcaatgcca      2220
     gtaacagaaa aaaggaaatg gcgtgagtct agctgctatc gatgcggttc gtggcgacac      2280
     agtggggatt caagtgagtg ttatgcgcgt aaagcacgat gtaactcttg cggacgagta      2340
     ggtcattttg gtagagtttg taagaaagac ggacggaact cggtcaaaaa caattatcaa      2400
     tggaagagag caaagaatga accaacggat cgacgagaac aaaatcaacg aaatgaagcg      2460
     aatgaaaagg acagccttaa tgaggtatta tatcacaatt gagagggcta gtagaatcct      2520
     gtatgggtgt ttgtaatgat atcttatttt cttattagat ttttaccacg acgcgactat      2580
     tggacaacgg tatggttaaa tgcatgttag atacggttca tgtagttttc ctaatagatt      2640
     ccggtgcatc agtaaacaca gtgacagaac aagtatggtt agaattacaa aaatcaaagg      2700
     caaacattca agatatatct tacaattgcg ataagcaaat cacaacgtac gctagtaatc      2760
     agcctctgaa attaatttta aagtttaaag cagtaatatc aattaatcag agtaaaccta      2820
     caactttcgc tgaattcatt gtagtgcaag gcagtaataa gtcgttgtta ggtaaagtga      2880
     cggctgagga attaaaagtt ttgaaagtag gcttggaagt acaaaatatt gaggaaagat      2940
     gtcaaccatt tccgaaattc cccggtattc agattcgatt atctattaac aaagaagttc      3000
     cgccgaagaa aatatcctat gttcgcattc ccattgcact ggagaaaaag gtagaaagta      3060
     aaattcaaca gatgttagaa actgatataa tagaaccagt tgatggtccc cccgaatgga      3120
     tatcaccaat ggtggtggta ccaaagggca aagacgatat tagaatttgc ataaatatga      3180
     agtatccaaa tcaagccata caacgagagc attttccact tccagttatc gaaactttat      3240
     tgaacaaatt acaaggatgt aagattttct caaaacttga tataacttcg gcttatcacc      3300
     acgtagaact ccatccagac tcgagaggaa tcaccacttt tatgacaaac aaaggattaa      3360
     tgcgttttaa acgattgatg tttggaataa attgtgcgcc agagatcttt cagcggatta      3420
     tgacgcaaat gcttctagga atagctggtg tagtaatcta catagacgat atagtcattg      3480
     caggaaaaga taaagtggaa catgatagtc gattaaagca ggtgttagaa atactaggaa      3540
     agaataatgc tacattgaat aaggataaat gttctataga agtaaaagaa ttggaaatcc      3600
     tcggctacaa tataagtgcg tcaggtattg gtcccacaga agctaaaata gaggctataa      3660
     agaactttag gaaaccaata acaaaagaag agactagaag cttcttaggt ttagttaatt      3720
     ttgttgggca gtttattcat cacctttcaa gtagatcaga accattacga aaattcatca      3780
     gaggagaaat agaagtattt ggaaaagagc aagaagcagc gtttgatgat ttaagactgg      3840
     aattgtcgaa taatgtacgt aaactgggtt ttttcaaacc ggaagaggac acggaactgt      3900
     atgttgatgc ttctccaaca ggattaggtg ccgtgttgac ccagaggaat aagaaaggca      3960
     tgtctaggat tataagcttt gcatcaaaag gcttgacgaa acctgaaaag gtctatccac      4020
     aaacgcaaag agaagcgtta gcagtagtat gggctgttga aaaattttat ccatacttgt      4080
     ttggtactac atttaccatc tttacagacc ataaaacatt agagtatata tttgaaggaa      4140
     agcatcaaag cggcaaacga gcttgttcta gagcggaagg ctgggcttta agactacagc      4200
     catataattt tgtagtaaaa tacattccag gctcatctaa tatttcagat agtttatcaa      4260
     gattatgccc taattcagat aaagataaat cgtttgatga agcttctgaa cattatgtat      4320
     ataccattga gagcgagtct gaagcaatta cgttaaacga aattaaagcg gaaacagata      4380
     aagatgaaac aatgagagag gtcattaaag caattgaaaa tcaatcttgg aaaccaaaac      4440
     tagcacacta tcaggcattt agtaaagaac taggaatagt gcagggtatt gtagttaggg      4500
     acgatagatt agttctacct gaaaaattgc gtcaaaaggc cctaaagata gctcacatag      4560
     gtcaccctgg cgaagaaact atgaaaagaa aacttaggga aagaatgtgg tggccatata      4620
     tggaccgaga aatcacatgt tttgtaaaag cttgtgctgg ttgtgcagca gtgagacctt      4680
     tgggtcacgc agaaccaatg attagaaaag aaatgccaga tcgtccttgg caggatattg      4740
     caatagattt tttttcggtt aaggaatatg gaacgtttct ggtagttgtc gattactaca      4800
     gcagattcat aaaaatcatt gagatgaaaa ttacatcagc aagtaagact atcgaggctt      4860
     tagagacaat atgcaaggat caatcatatc cagaatcaat tagatgtgac aatgggccac      4920
     cttttagtag tgaagaattt aaaaactatt ttaaacgtaa agatataaaa ataattcaca      4980
     caataccgta ttggccacag atgaatggac ttgtggaaag gaataataga ggtatacttc      5040
     gtgctttgcg aattgcgaaa gcagaaaaaa cagattggcg cgaagcaatt ataaaatatg      5100
     aaaatatgta caacaccact ccacactcca taacgggaaa agctccgctt gaactactca      5160
     ctggaagacc aatcaaaggc ctattgccat cgttaagaac tacagaggtt tggaatcgtg      5220
     atagtgaagt taaggaaaga gatgctataa agaaaatgaa aggaaaactt tacgcagata      5280
     gatcaaggaa atccaaacag tctggaatta aagtaggaga tagagtgcgg gtatggcatt      5340
     accagcaagg aaaatcggag ccaaattatg gaattgagat atttaaggtg ttaagaaaag      5400
     taggaaatga tacggtagtt gtaagtagtg caggtgtaaa atatcgccgg cccgtggctc      5460
     atttaagtaa ggtttgtgac gaagaaacgc aacaaaacaa tacaataagt acacaacata      5520
     aacagcaaca aaaggataag aaggaattta aacgtcccac gcgcattcga aaaatcccaa      5580
     ataggtataa tgattagttt ttttttcttt tcttgcttta agtaataata attaaaatat      5640
     atttgtaatg tacatatttc acttccgagt agaaaaggga                            5680
//
ID   Gypsy-19_AnMe-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-210
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6856-6856 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 210 BP; 73 A; 31 C; 66 G; 40 T; 0 other;
     tgtagagttg cgtacaagtt cagcaaaaga gagaggatcg catgagtgga tgagcgctga        60
     gcgcactggc tcaaagagag aattgtgagg gagaggaatt gatgagagcg tatataagca       120
     agtgctcaaa gcaaagaagg ggggcttttt ggaataaaca gttggacaga gaactattaa       180
     cagcaccgaa ctaacgggca ggattctaca                                        210
//
ID   Gypsy-19_AnSt-I repbase;    DNA;    INV; 6054 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6054
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 802-802 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1435..2526
FT                 /product="Gypsy-19_AnSt-I_1p"
FT                 /translation="MLQPVIQSNNEVSMLASMSFATLQIQACQPKEEKEEV
FT                 DKTTFERWKEQFDAAMDFAGISSESLKMSAFKMKAGRALLNVLETSAPIQS
FT                 EKDANLYSYSNAIDRLDQYYGSHLYVFRQRQKLRAMKQIKDESDYQFVNRV
FT                 IELGKLCNYKDEQLIETIADVIQIHAINPKVRKAGWKILKKRGTINELLDR
FT                 VRACEIEAINENIFNRNQQPLQSTAEVSAVSYGAYPKTASRLGEFQRDRLT
FT                 YRQKHWGMQEDRGPNKRGFTGFATNRSFGIRRIVCWRCNSNSHQPENCYAI
FT                 DKRCRGCQTVGHIERACRPDLQNKAVKRYSTEGESSQSSKTRKIAAITDGN
FT                 DADKTECEQKTVSKTFLTEAD"
FT   CDS           2808..6038
FT                 /product="Gypsy-19_AnSt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VILESTSRANCYISDIVKXNDDRLYVIIRGENDQGSV
FT                 VGYVAGVPINFLIDSGADVNTISEDNFDCLCRSDPEKTKIFNVRDGTDRSL
FT                 KAYGMKDEIPVVASFVAELFISMDRPRTMEKFYVIPKARALLSRNTSLRYS
FT                 VLQLGMEVPVKTNMGNDTTRLMPGEIFVLADSSEFPKFNVLPVMLTYDKGI
FT                 PPSRNVFTSIPPAFRNETVKRLDELLSCGIIERVTDEMENSFCSSLLVVPK
FT                 GKNDIRLVVDLRGPNKSIIRTPFPMPTLEAILAQLNGASWFTTIDLSSAFF
FT                 HVELHEDCRHLTNFFAGNGTYRFKRLPFGLCNAPDIFQEILQTKVLTEXKG
FT                 VLNYLDDILVFGSSKEEHDINLEKTLQRLREHNVRLNSAKCVFGSRSVKFL
FT                 GFKLCGDGWRIEDDKRKALENFRRPETLSEVKSFLGLVNFTERFIHKRAEK
FT                 TTKLRTLAKSGIFYWTDKENQEFEFLKTXALNSIIRLGYFDHKDRTELYVD
FT                 ASPIGLGAVLVQFSESKIPRIISCASKSLTPAEQRYPQTQKEALAIVWGVE
FT                 RFAYYLINKHFIVRTDSEANEFIFGGSHRIGRRAMTRAEAWALRLLPYHFS
FT                 IERVPGCLNVADALSRLICKSQKDDAFDEDNEKHILYALDAGDMTISWTEI
FT                 QAASEADEELGVVRSGIQTGKWPKDLRRYESESKHLRTLGDIVFKGDLIVL
FT                 PSNLRVRALKAAHRGHVGCGATKRILREFFWWPNMAKEATKFVSDCETCLV
FT                 ISKRNPPIPLSSRELPDGPWEILQIDFLSLPGCGSGEFLLTVDTYSRYLHV
FT                 SEVKQTDARTTNDALCRVFSVWGLPRIIQSDNGPPFQGTEFIKYWEDKGVK
FT                 VRKSIPLSAQSNGAIERQNQGVIKAVAAAKQEGRLWRXALDEYIHIHNTRK
FT                 HHSRLGVTPFELLVGWRYRGTFPCLWNSRETIDRIAARENDAVSKLVSKQF
FT                 ADAHRGAKESTITAGDVVLTTVFQRSKTDPTFSKEKFTVLAREGAKVVIVN
FT                 GKGMKLTRNIQDVKRVSNCDRKKKFEEDLEEPIEVTESTNNVSDQYSRPKR
FT                 NIRXPNRYQESVMYHICYQE"
XX
SQ   Sequence 6054 BP; 1926 A; 1108 C; 1402 G; 1598 T; 20 other;
     atggcgcaag tcggtaagat aatcaataca taagttggct ctaaagatcg tcgtatcgat        60
     taatcgattg gcacgtgcag cgatacggcg gttctaggaa atcatttcgg ttctgcatag       120
     ccatgacgcg tttgagcatg tatgtgttgc tcactcgctg tcgatctttg tcgaacgatg       180
     cgcgggaaga tggagaacca cgagcggtgc atgacaattt ataattgtaa tatgaaaaaa       240
     gaaagccttg tgtggttcat gtaaaaataa gtaaagcaga tattggcacg agtaacgtta       300
     tgacttttcc acaagactat tttaaacaaa agttccgatt ctgattcttc ttgcatcttt       360
     ctgtactgct atgacatgtt tgagcgtgta tgcgttattt ccgtttttta tttcgagaaa       420
     aagagagaac ctcgagcaat tcctagttat cgaattccaa aaaaaagaag aacctcgagc       480
     ggttctactg tggatatatc ttatgtgatt agtataaaga agaaaaaaag aagaaccttg       540
     agcggttcta ctgtggatat ttgctatcga atagttgtaa aagaaaagag agaacctcga       600
     gcggttcata tctaagtaat taaaaaaaaa aaagaacctc gagcggttct actgtggatt       660
     gtaaaagaaa agagagagcc tcgagtggtt catatctaag tcttaaaaaa aaggagaacc       720
     tcgagcggtt ctactgtgga tatttgctat cgaataattg taaaagaaaa gagagagcct       780
     cgagcggttc atatctaagt aattaaaaaa agagagaacc tcgagcggtt ctactgtgga       840
     ttgtaaaaga aaagagagag cctcgagcgg ttcatatcta wgttattttw ttagaaaaaa       900
     gaacctcgag cggttctagt gtaaacattt ctwattctat aattgtaaaa gaawaagaga       960
     gagcctcgaa aggttcatgg tgttaccaac tcctaaaaaa agagagcctg gagcggttca      1020
     tacacaagta tttctatttg aaaacaaaac aaaaaaaaaa gggagagaaa agaaggacct      1080
     cgagcggttc ttaaaaatga tgagaaggaa gtatactaac acaacgaata ctttcaagat      1140
     tttataccat atatatttga cggtgtaagc acatgtcacg ttgtccaaca caaggagata      1200
     cggaaatttt ggtcattcta ttgtattctt gttcgtttct tcagcaaggg cgacataaca      1260
     aaagcagagc tgaacgcctt gatcgaggct ttgaagaagg agaaagagaa gaatwccttg      1320
     ctagagtcac agctggagga agctcgcgcg aactcttcta aacgacgaaa tgactggatt      1380
     gaagaagcat ctgatgagca gttatcccgw atcccaccgt gtggctcwtc gacaatgcta      1440
     caaccggtca tacaatccaa caacgaggtt tccatgttgg cgtctatgtc tttcgcgaca      1500
     ctacaaatac aagcttgtca acccaaggag gaaaaagaag aggtggataa gacaacattc      1560
     gaacgatgga aggagcaatt tgatgcagca atggatttcg cgggaatttc gagtgaatct      1620
     ctcaagatga gtgcattcaa aatgaaagca ggtcgtgctc tgttgaatgt actggaaact      1680
     tcagcgccaa ttcaatctga gaaagatgcg aatctttatt cgtactcgaa tgcaattgat      1740
     agattggatc aatattacgg atctcatcta tatgttttcc gtcagcgtca aaagttgcga      1800
     gcgatgaaac aaatcaaaga tgagtctgat tatcaatttg tcaatcgagt gatcgaactt      1860
     ggcaaacttt gtaattacaa ggacgagcag ttaatagaga ccattgctga cgtgattcag      1920
     atacatgcaa ttaatcccaa agtacgcaag gcaggatgga aaatccttaa gaaacgcggg      1980
     acgattaacg agctgttgga tagagtgcga gcttgcgaaa ttgaggcgat caatgagaat      2040
     attttcaata gaaatcaaca accacttcaa tctacggctg aggtctctgc tgtttcgtac      2100
     ggtgcttacc caaaaacggc gtctcgtctg ggggagtttc agcgtgatag attgacgtac      2160
     cgacaaaaac attggggaat gcaggaagat agaggaccca acaaaagggg ctttaccgga      2220
     tttgccacaa atcggtcttt tggaattcgt cgtatcgttt gttggagatg taacagcaat      2280
     tctcatcagc cggagaattg ttacgctatc gacaagaggt gccgaggctg ccaaactgtt      2340
     ggacatatcg aacgagcatg tcgtcctgat ctgcaaaata aggcggttaa acgatactca      2400
     acggagggcg aatcatctca atcgagtaaa acccggaaga ttgcggcgat tacggatggt      2460
     aatgatgcag acaaaactga atgtgaacaa aagactgtga gtaaaacttt cctaactgag      2520
     gccgattagc tttcaatttc taattcctaa taaaawttat ttttgtggtt cgtttatgca      2580
     tttatcagtt gcatacttmt aaaattgcac ctgcttctac tttcttaaac gataggaagt      2640
     aaacatattt tcctttcgag cgttgaacta atcagtaact ctcgaaaatt tatagtcaca      2700
     ttctgtaata aactctttta gatataaatt gcttgcaatt ttgccataac aataattatt      2760
     awacttgata cacaactgaa tcaaaactaa ttatatttat gttttaggta atattggaat      2820
     ctacttcaag agctaattgc tatatctcgg atattgttaa awctaatgac gaccggttgt      2880
     atgtgataat ccgaggagaa aacgatcaag gatcagttgt aggttacgta gcaggagtcc      2940
     ccattaattt tttgattgac tctggtgctg acgttaacac catcagcgaa gataattttg      3000
     attgtttatg tagaagtgat cctgaaaaaa cgaaaatttt caacgtaaga gacggaacgg      3060
     atcgttcctt gaaagcttac ggcatgaaag atgaaattcc ggtagtggct tcttttgtcg      3120
     ctgagctgtt catctcaatg gaccgtccac gtacaatgga aaaattctac gttattccaa      3180
     aagcgcgagc attgctwagc aggaatactt cgttaagata tagcgtgcta caacttggta      3240
     tggaagtkcc agttaagaca aacatgggaa atgacacaac acgattaatg ccgggagaga      3300
     tttttgtatt ggcagattcg tcagagtttc ctaaattcaa tgttcttcct gtgatgttga      3360
     cttacgataa agggattccw ccgtctagga acgtatttac tagcatccct ccagcattta      3420
     ggaacgagac agtaaaacga ttagacgaac ttttatcctg cggaattata gaacgggtta      3480
     cggatgagat ggaaaattca ttctgttcat ctttattggt ggtccctaaa ggcaagaatg      3540
     atattcgctt agtcgtagac cttcgaggcc caaataagag cataataaga acaccatttc      3600
     cgatgcccac attagaggcc attttagcgc aactgaacgg cgcatcatgg tttacaacca      3660
     tcgatttatc aagtgcattt tttcatgtgg agttacatga ggactgcagg catttgacga      3720
     acttttttgc tggcaatgga acatatagat tcaagaggct accattcggt ctttgcaacg      3780
     cacccgacat cttccaagag attctacaaa ccaaggtact tacagaatgw aaaggggtgc      3840
     ttaactattt ggacgatata ttggtttttg gtagctcaaa agaagagcac gatattaatt      3900
     tggaaaagac ccttcagcgg ctgcgcgaac acaacgtcag gcttaactca gctaaatgcg      3960
     tatttggwtc gagatcggtc aagttcctgg gatttaagtt atgtggagac ggatggcgta      4020
     ttgaggatga taagaggaag gcgttggaaa attttcgaag gccagaaaca ttgtctgaag      4080
     tgaagagttt tctaggattg gtaaacttta cggaacgctt tattcacaaa cgtgccgaaa      4140
     agaccacaaa gctaaggaca cttgccaagt cgggcatttt ctactggaca gataaggaaa      4200
     atcaagagtt cgaatttttg aaaacagawg cgctaaactc tatcatcaga ctcggctatt      4260
     tcgatcataa agacaggaca gaactatacg tggatgcgtc ccctatcgga cttggcgctg      4320
     tactcgtgca attcagcgaa tccaaaattc cacgtataat atcttgcgca tcgaagtctc      4380
     tcacaccagc agaacaaaga tatccccaaa ctcaaaaaga ggcgcttgcg attgtttggg      4440
     gtgttgaaag atttgcttat tatttgataa acaaacactt catcgttaga acagattccg      4500
     aagccaacga attcattttc ggcggatcac atcgtattgg taggcgagct atgacgcggg      4560
     cggaagcatg ggctctacgt ttgctgccgt atcactttag catcgaaaga gttccagggt      4620
     gtctaaatgt tgctgacgct ttatcaaggc tgatttgcaa atcgcagaaa gatgacgctt      4680
     tcgatgagga caacgagaaa cacatattgt acgcgttgga tgcaggagat atgaccattt      4740
     cttggacgga aatacaagcg gcatctgaag cggacgaaga gctaggagtt gtgagatcag      4800
     gaattcaaac cggaaaatgg cccaaagatc ttcgacgtta cgaatctgag tcaaaacact      4860
     taagaacgct gggtgacata gtcttcaaag gtgacttaat cgttttgcca tctaatcttc      4920
     gcgtcagagc actgaaagcg gcacatcgag gacatgtagg ctgtggggct acgaaacgta      4980
     tcctacgtga gtttttctgg tggccaaaca tggcaaagga ggcgacaaag tttgtatcgg      5040
     attgtgaaac ctgtttagtc atatcaaaaa gaaatcctcc gattccactt tccagtagag      5100
     aactaccaga cggcccctgg gagatcctac aaatcgactt tttgtccctg cctggttgtg      5160
     gctctggtga atttctgttg acggtggata cttattctag atatttacac gtttccgagg      5220
     ttaagcaaac ggatgctcgg accactaatg atgccctttg tagagttttt tcagtttggg      5280
     gtctaccacg cattatacaa agtgacaacg gaccaccctt ccaaggaacg gaattcatta      5340
     agtactggga ggataaagga gtgaaggttc gaaaatcaat tcccctcagt gctcaatcca      5400
     acggagccat cgagcggcaa aaccagggcg tgataaaagc ggtggcggca gcgaaacagg      5460
     aaggcagact ctggaggwwc gcattggacg agtacattca cattcacaat acacggaagc      5520
     atcactcacg attgggtgtt accccgtttg agttgttagt cggttggcgg tatcgcggga      5580
     catttccgtg tctgtggaac tcgcgagaaa cgatagacag gattgcggct agggaaaatg      5640
     atgcggtttc gaaactagtt agtaaacaat ttgcagatgc tcatcgtggg gcaaaagaga      5700
     gtactattac tgcaggcgat gttgtcctga ctacagtttt tcaaagatca aaaaccgatc      5760
     ctacattttc taaagaaaaa tttacagtgc tagcaagaga gggagcgaag gttgtaatag      5820
     taaatggaaa gggtatgaaa ttgactagga atatacagga tgtaaaacgg gtttcaaatt      5880
     gcgataggaa aaagaaattt gaagaggatt tagaggaacc gatcgaagtt acagaaagta      5940
     ctaataatgt cagtgatcag tacagtagac ccaagagaaa catacggwtg cctaacagat      6000
     atcaagaatc agtaatgtat cacatttgct accaggagta gaggtgaagg agga            6054
//
ID   Gypsy-19_AnSt-LTR repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-407
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 815-815 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 407 BP; 172 A; 54 C; 117 G; 64 T; 0 other;
     tgtagggatc gagagtgagg ttaaaagaaa aagatgaaga acgtatggga cgattatgag        60
     aattatgaac tcgtggggag agaagctcag caaaggaacg caaaacgaaa cgaaagagag       120
     ggcatgaaat gtaaccagac gaagagcgta aacgaaacag aacagaacga aacgaacgaa       180
     acaggaagag cacaagaaaa atgaaacagg acgatgacga tgaaaaagga tgaaggaaaa       240
     gcgaccgcag catgcggtca gtcttgtggt tgattgcgac gagagcggat gcgatatcgt       300
     acggacgtaa ttgtataaac aatcaaataa aaaaaaagtt gtacaattgt aaagcgaata       360
     cgaaggtgga agttggaaag ttctagaaat gtgcgatgat cacgaca                     407
//
ID   Gypsy-19_BTa-I repbase;    DNA;    INV; 604 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-604
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 683-683 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
SQ   Sequence 604 BP; 163 A; 222 C; 77 G; 142 T; 0 other;
     ttggtgactc ccgacgtgag tgaacacgct cagccttctg gttcacttca ttcatgcatc        60
     ctcacctcaa gaacacgctc aaccttctct caagtcaact gtactcaagc actcaaactc       120
     aaatctctca ctggaacagt catatttgat catcttagca tgagcattga aagcttccag       180
     catcatcacc gcatcgtatc catctctctc cgccgcgcaa atcaacacgc tccagcaagt       240
     tgccgcagaa cacagcacgt tcccaacttg ttgtcccgag catcaacctc tttgcccgga       300
     aagatgatgg tcacaaaact tcaaccgtgt gtcacccggg tcgaatggcg ctccccggca       360
     cgctgacaca cacctcctgc ttctcaccac tcaatcaatc ctcaacccac tcaatcaacc       420
     atccctcaac tctcgccatc atcactcaat caaatcctca aacttcccat catcactcac       480
     tcaatcctca actttccaac cactttacac acattttcca aacctgtttc cactccaaca       540
     tccaatttca ccactcactt ctccaaccac ccacagagac tccgtctcaa ccgcagggaa       600
     gtac                                                                    604
//
ID   Gypsy-19_BTa-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-242
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 693-693 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 242 BP; 46 A; 92 C; 50 G; 52 T; 2 other;
     tgtggcggcc aatcaccgct cacctctggc gacgcagccc atgctcgctc ctgattggcc        60
     gackcagtct caactacggc tatatacgtc gtgaccacac sgactctggt cactccgctc       120
     ccgtcaacca cacggaccac atcactcatc cagcggacat ctcgcagccg gccggcttgc       180
     cctttccaac ggctcttctt agagccacca cattagagca cctcttctgg tctttggcca       240
     ta                                                                      242
//
ID   Gypsy-19_CQ-I repbase;    DNA;    INV; 7646 BP.
XX
AC   AAWU01010823;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_CQ_;
KW   Gypsy-19_CQ-LTR; Gypsy-19_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7646
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 417-417 (2011).
XX
DR   GenBank; AAWU01010823; Positions   25785   33430.
XX
CC   Positions [4633-5112] - Integrase core
CC   'GGTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..2251
FT                 /product="Gypsy-19_CQ-I_2p"
FT                 /translation="MGSKFPYVVHLLNDDVDYELRVRGRKDDLNKPLEEKQ
FT                 KILRRLYREDKLEKKTYASIYAIDQEYDWMVSHIEKLRAFLEKDPQPKYIS
FT                 RLRYFYMRANRSNTTTEQSEGLKKSILATISELLTIYDVNESETESDKSDG
FT                 ESNDKDKDKDNKLKLQELQAKEEELKKKEEDIKRKEQELKEKQKQQKPFDQ
FT                 TQFETAVMEAVKKMFAGPLPFPNTKPLTIPSQQTTQEELARTELTKQVKTL
FT                 EKQLQQMKDKMSQMGRQNNNQGVVTAELLAQALSTLQTSQNQIPNQTQGNL
FT                 DPQNNPNQNPNGNQYPPIPPNPPNSTDIFLDPEEENSSEEDSQIDWTTNSG
FT                 RESGRTHYDRRIEKWNIYFSADSRSITIEDFIYRIKVLANMNQISKQRLLS
FT                 HVHMLLRGEASNWFFTYFHPSWDWDMFEIQIRFRFGNPNQEQGTRQSIYNC
FT                 KQQKGEKFVAFVDEIERLNKLLTKPLSRQRKFETIWENMHAHYRLQLAPFT
FT                 IQTLEQLKALNQRIDANDPSLNQKGTKHAVHNLETSSDHAGSDEEEVNAIY
FT                 KKPHGRGSQSQPSNRNETTRLPICWNCRNQGHFWRQCSERKTTFCYICGNP
FT                 GTVAATCDKHPKKEPTGQTGDPSGNQDRNA"
FT   CDS           2653..5520
FT                 /product="Gypsy-19_CQ-I_1p"
FT                 /translation="MMEGEKGLEEITEITQSPATGEMVNEIFHFFIHPVEA
FT                 LPVLEKPAPDESLDIPGLDLPEPSKTTPDTVETEHELTSEERSHLAEVIRT
FT                 FPCTADGVLGRTTLLQHEINLREDAVPRRQPLYRCSPAIQAEVDKEIQRYK
FT                 DLDAIEECTSEWANPLVPVRKSNGKLRVCLDSRRINALTKKDSYPMRDMKG
FT                 IFHRLGSANYFSVIDLKDAYFQIPLKEECRDYTAFRTSKGLFRFKVCPFGL
FT                 TNAPFTMCRLMDRVIGFDLEPQVFVYLDDIVVATKTLDEHLELLKIVAERL
FT                 RNANLTISLDKSRFCRKKVTYLGYLLTGEGVSIDNSRIEPILNYSRPKCVK
FT                 DVRRLLGLCGFYQRFIQNYSRIVSPISDLLKKEKKKFTWTEAAEEGFQELK
FT                 TALISAPILANPDFSLPFEIESDASDNAVGAALVQKVDEETKIVAYFSKKL
FT                 SSTQKRYASVEKECLGVLLAIQHFRHFIEGSRFKVVTDARSLLWLFTIGVE
FT                 SGNSKLLRWALKIQSYDIELEYRKGKNNITADCLSRSLDAIGIASVDPEYQ
FT                 ELTKKILSDPQGYPDFRVVEGQIYKLVKNEGRMEDTRFCWKIYPAQGERSS
FT                 ILERIHGTAHLGFEKTLAALRERYFWPLMSSQTKRFCQNCLICQTSKATNV
FT                 NTTAPLTTQRKIAEHPWQFVTMDYIGPLPASGKGRNTCLLVITDVFSKFVL
FT                 IQPFRQATAESLCPFVENMVFQLFGVPEVLLTDNGTQFVSKLFQDLLNRYN
FT                 VSHWKTPSYHPQINDSERVNRVITTGIRATIKRDHKEWSNNIQTIANAIRN
FT                 SVHEATHYTPYFVMFGRNMISDGREYRHLRDNSAGSGNLDDAQRAKLYEEV
FT                 RENLKKAFEKHSKYYNLRSNDKCPKYTLGEKVLKRNTELSDKGKGYCAKLA
FT                 PKYVPAVVKRVVGEHCYELEDEKGKRIGVFNCKYLKKLNHSPSQLVKQSGV
FT                 T"
XX
SQ   Sequence 7646 BP; 2519 A; 1398 C; 1638 G; 2091 T; 0 other;
     ttttggcgcc caactacagt cacggagtca cggaaagttt gtttttggta ggaaataatg        60
     tttttttttt ttaccatgtt taggttctat tttaaggttt tgaaaattaa ataaggttgt       120
     ctaggaaaat acaatttcgt gggaggaatt gagataatgt tttaggttac tttttcgaat       180
     attttggaat gttttggtaa aacattttgt ttatttcggg aaacactgtt tggaaagatg       240
     ttttttgtgg aaaactttat gagtgggtac aagtaagatt aaagattatt agtatacgat       300
     attatagtac ataaggcata tttcatacac tttctttgca aaacacttat attagttggt       360
     ttcaaagatg ggttcaaaat ttccatacgt ggttcatctg ctgaacgacg atgtagatta       420
     cgagcttaga gttagaggtc gcaaagatga tcttaataaa ccgttagaag agaaacagaa       480
     aattttaagg cgtttgtatc gagaagacaa attggagaag aagacttatg cttcgattta       540
     tgctatagat caagagtacg attggatggt ctcacacatt gaaaagctca gagcgttttt       600
     agagaaagat ccacagccga agtacatttc gaggttaagg tatttctaca tgagagcaaa       660
     tcgtagtaac acaacgacag aacaatctga gggtcttaag aaatctatac ttgcaacgat       720
     ctcagagttg ttaacaattt acgacgtgaa cgaatcagaa actgagagcg ataagtcaga       780
     tggagagtcc aacgataagg acaaggacaa ggataacaag cttaaattgc aagagcttca       840
     ggcaaaagaa gaggaactaa agaagaaaga agaagatatt aaacgtaaag aacaagaact       900
     caaggaaaag caaaaacaac aaaaaccatt cgatcaaaca cagtttgaaa cagcagtaat       960
     ggaagcagtt aagaagatgt ttgcaggtcc tttgccattt ccaaatacca aaccgttgac      1020
     cataccttct caacaaacta cacaagaaga gttagcaaga acagaactaa caaaacaagt      1080
     caaaacttta gaaaaacaac tacagcagat gaaagataag atgagtcaaa tgggtaggca      1140
     aaataataat cagggagtcg taacagcgga acttcttgcg caagctttga gtaccttaca      1200
     aacttctcaa aatcagatac ctaatcaaac acaaggtaat ttagaccccc aaaacaaccc      1260
     aaatcagaat ccaaatggaa atcaatatcc tccaatccct cctaacccgc caaattccac      1320
     agatattttt ctagatccag aagaagaaaa tagttcagaa gaagactcgc aaattgactg      1380
     gacaacaaat tccggaagag aaagtggtag aacacattat gataggcgaa tagaaaaatg      1440
     gaacatttat ttctcggcgg attcgcgatc tataaccata gaagatttca tttacagaat      1500
     aaaagttctc gcaaatatga accagatttc caaacaacgc ttacttagcc atgtacacat      1560
     gctactacgc ggggaggctt cgaattggtt ttttacctat tttcatcctt cttgggactg      1620
     ggacatgttt gagattcaga tccgtttccg gtttggaaac cctaaccaag agcagggtac      1680
     ccgtcagagt atttacaatt gtaaacaaca aaaaggggag aaatttgtcg cctttgtgga      1740
     tgaaatagaa cgattgaata aacttttgac gaaaccattg tctagacaaa gaaagtttga      1800
     aacaatttgg gaaaatatgc atgctcatta tcgcttgcag ttagcacctt tcacaattca      1860
     aacattagaa caacttaagg ctcttaacca gcgaattgat gctaatgacc caagtttgaa      1920
     ccaaaagggc acgaagcacg ctgttcataa cctcgaaact tcatcagatc acgctggatc      1980
     ggatgaagag gaagtgaacg caatctataa gaaaccacac ggaagagggt ctcaatctca      2040
     gccctcgaac agaaacgaaa cgacccggtt gccaatctgc tggaattgtc gaaatcaggg      2100
     ccatttttgg aggcaatgta gtgagaggaa aacaacattt tgctacattt gtggtaaccc      2160
     gggaacggtc gcggctacgt gtgacaagca cccaaaaaaa gaaccgactg gacaaactgg      2220
     ggacccgtcg ggaaaccaag accggaatgc ttaagtggga gcacgagtat tccaggtgaa      2280
     tcagtggttc ccaactcgaa acctttcatt gatccttttc aaaacctttc agaaattaaa      2340
     attcaaacta atcaatgccc tcaggtgaca attcgaattt ttgaaaccga aattaacgct      2400
     ctcttagatt cgggtgcgag tatttgtgtg acgaattcta ctgatttagt cgaacgttac      2460
     ggacttaaaa ttcttccatc gccgattcgt atttgcacgg cggaccaaac gcaatattcc      2520
     tgcgagggat atgttaattt cccaataaca ttccgaaaga ttacgagagt tgtaccagtg      2580
     gtagttgttc cacaggtcgc tagaaatttc attttaggaa taaacttctg gaatgcattt      2640
     ggaatcaaac caatgatgga aggagaaaaa ggtctcgagg agattaccga gataacacaa      2700
     tcaccagcca cgggagaaat ggttaatgaa atatttcatt ttttcattca cccggtcgag      2760
     gcacttcccg ttcttgaaaa accagctcca gatgagtcgc tagatatacc tggattggat      2820
     ttacctgaac catcaaagac gacaccggat accgttgaaa cagagcacga actaaccagc      2880
     gaggagcgaa gccacctggc ggaggtcatt agaaccttcc cgtgtacagc ggatggagtt      2940
     cttggccgga cgaccctgtt acagcacgag ataaacctac gagaagacgc agtgccacga      3000
     cgacaaccac tctatcgctg ttcgccggcg atacaagcgg aagtggataa ggagattcaa      3060
     cggtacaagg acctagacgc gattgaagaa tgtacgagcg aatgggctaa cccgttagtg      3120
     ccggtgcgga agtccaatgg gaagttgagg gtgtgtctcg attcgaggag aatcaacgcc      3180
     ctcacaaaaa aagattcgta tccaatgaga gatatgaaag ggattttcca ccgactaggg      3240
     agtgcaaact atttttctgt aattgacctg aaggacgcat attttcaaat tccattaaag      3300
     gaagaatgta gagattatac agcatttaga acgtccaaag gtcttttcag atttaaagtc      3360
     tgtccctttg gtttaactaa cgccccattc accatgtgcc gcctcatgga tcgagtgatt      3420
     ggcttcgatt tagaacctca agttttcgtg tacttagacg acattgtggt ggccacaaaa      3480
     actttagatg aacatttaga acttttaaaa atagttgctg aacgtcttcg caacgctaac      3540
     cttaccattt cattagacaa gtccagattt tgtcgaaaaa aagttaccta tttggggtac      3600
     ttgttgacgg gagaaggcgt ctccattgac aactctagga ttgaaccgat tttgaattac      3660
     tcaagaccaa aatgcgtcaa ggatgtacga cgactgctag gtctttgtgg attttatcaa      3720
     cgattcattc aaaattatag tcgaattgtt tcacccattt ctgatctctt aaagaaagaa      3780
     aagaagaaat ttacttggac ggaagcggcc gaagagggtt tccaggaact taagacagct      3840
     ttgatatctg cgcccatcct ggctaaccca gatttctctt tgccatttga aattgagtcg      3900
     gacgcctccg acaatgctgt tggggcagcc ctagttcaga aggtagatga ggaaactaaa      3960
     attgtagcct attttagtaa aaagcttagt agcactcaaa agcgttacgc aagtgtcgaa      4020
     aaagagtgtt taggagtttt actcgccatc caacattttc ggcattttat tgaaggatca      4080
     agatttaagg tagtcacgga tgccagaagt ctattgtggc tttttacaat tggggtagaa      4140
     tcgggaaatt caaaactttt gagatgggcg ttaaaaatac aaagttacga catagaacta      4200
     gaatatcgaa aagggaaaaa caatataacg gcagattgtt tgtcacggtc cctagacgcg      4260
     atcggaattg cctcggtcga tccggagtac caggagctta ccaagaaaat cctcagcgac      4320
     ccgcagggtt acccagattt tcgcgtagtc gaaggacaga tctacaagtt ggtgaagaac      4380
     gaagggagaa tggaggacac gagattctgt tggaaaattt acccagcaca aggagaacga      4440
     agcagcattc tggagcgaat ccacggaaca gcacatctgg gttttgagaa gaccctcgcg      4500
     gcactcaggg aaaggtattt ttggcccctg atgagctcgc agaccaagcg gttttgtcaa      4560
     aactgtctga tttgccagac gagcaaggcg acgaatgtca acacgacagc accgttgacg      4620
     acccagcgga agatagcaga acatccatgg cagttcgtca caatggacta catcggccca      4680
     cttccggctt ctgggaaggg acgaaacact tgcctcctag taataacgga cgtgtttagc      4740
     aaatttgtct taattcagcc ttttagacaa gccaccgctg aatcgctttg cccatttgta      4800
     gaaaatatgg tttttcaact tttcggagta cctgaagtgt tgctcactga taatggaact      4860
     caatttgttt caaaattgtt tcaagatctt ctgaatcggt acaacgtttc tcattggaag      4920
     actcccagtt accaccccca aattaacgat tctgaaagag ttaatcgcgt tatcacaacg      4980
     ggcatacgag cgacgataaa gcgggatcac aaggaatggt caaataatat tcaaactatt      5040
     gctaatgcaa ttagaaactc agttcatgaa gccacccact acacgcccta ttttgttatg      5100
     tttggtagga atatgatttc agatggtaga gaatatagac acttgagaga caattcagcg      5160
     ggaagcggga atcttgacga tgcccagcgg gcgaaattgt acgaagaagt tcgagaaaat      5220
     cttaaaaaag cttttgaaaa gcactccaaa tactataatt tgagatcaaa cgacaaatgt      5280
     ccaaaataca cattagggga aaaagtttta aaacgaaaca cagaactttc agataaaggg      5340
     aaaggttatt gcgcgaaact ggcccctaag tacgtccctg cggtagtcaa gcgagttgtg      5400
     ggtgaacatt gttatgaatt agaggacgag aagggaaaac gaatcggggt gttcaattgt      5460
     aaatatttga agaaattgaa ccattctccg tcacaacttg tcaagcagtc tggtgttaca      5520
     tgagaaatta aatttttaag ctatgagccc tcaagggagg ttacaaaaca tttaacgtgt      5580
     acaaaaatcc tacaatggga aataatcaca aattttgcaa aattctttgc aacaaagtat      5640
     gatttaacga gctatgtcac tactaaaata gggtaggaac aatgtaaatt aacaattact      5700
     acaaaaacaa cgaatttatg ttgaaattca tcaacctcgt tgaaaattca ccactccact      5760
     cggaaatcga gtaatgtttg ataagctatg acaacttttt gaaagtttac gaagcaatgt      5820
     ttactattgc atgaaaacat caatcgttcc aactaactcc tcagcaatga gtcgagagtc      5880
     ccacaaaaaa atggacaaac tactggtgac aagttgttga acggccattg agaatcgaaa      5940
     cagaaaccat gaatgaaatc gatgacgcat tcaagaccaa acggtaccat cgaaaccacg      6000
     aaacaaagta gaagaccaac cggatttgac aaaaagaaac cctacctatc aaaacaaaaa      6060
     gcacttaagt tagctagtta gtagtgtacc tagtttagag atatattagt acttatttag      6120
     gattagttca tttcttcgtc gaagtatacg acacgcacgt gcgatcaaca tcgagcacgg      6180
     tgcgttcatt gattagatga tatcgatgat caggaatccg cttgtgtaca ttgacgcagc      6240
     tccaatttgt aggttatgct tcaatagtag tagtagtagt ataattcatt gatgattgtt      6300
     gaggtcatcg gttgacatat tttggttgca gtagttagtt gaatatccat agtccggtct      6360
     tgcaattcat ttaattcctt agtcagttga atcatcatct taatagtccc ataattagta      6420
     ttgtaatccg tccaatccag tcaccttcag cctcattatt tacatttgct tttcattaca      6480
     aacgcctaaa aataaatcac acaaagcact tagttctttc attttttcaa ttttgtgagt      6540
     tactcccccc gtaaatccat cagtttaatt agagttcaac ctgctccagt cgcatagaat      6600
     acttaaattt tagattttag aaattttctg gccgcgtgaa cagcgagata tggacgattt      6660
     cctgtttact tttgagtttg tcagttgagg tttgacagtt cgacccattg ctaagcaaat      6720
     ggtgcgtttg atttcagtag gaatgtgatg ttagctgtta atcagtagct cacgtatttg      6780
     ggaaatcagt gttgtgaatt tagtcttttt tgaattttag ttgttcagtt aatgatactg      6840
     atggaaaagt tcaaattagg gtttgtgtaa ttttgcgttt ggaacgacta gggacaagtt      6900
     acctgaagag gagctttagg gtgggcctga gtctgaccag actgatcttt cggtgaatta      6960
     agacacgatc atactgctca acgtaatgat tgaggtgatg atcaagttct gaatgagcca      7020
     gttttttggg tgtataaatt tgttattttt tgcttttcaa taagttgaaa gacctgttga      7080
     gaaattgttg aggtaatgtt agtttgattg ggatttatga gtgtttgcga agttaagttg      7140
     tggaaattag gcgcaccgaa gccatgagct ggtgttgaac tgttaaataa tttgattgat      7200
     tttttttctc tggatatttt tttttttgta ggttaattta gttaatgaat tgaagatgaa      7260
     agttttagca atacctggta actcgaaaac ccattgaacg gggaaaacta gtggaactag      7320
     tacaatttac acgaagtgaa acgagttgag gacgatgacc tgtgaaaagt agtgggattc      7380
     cacgagagta taaaggtaga ccttaacaat gacttgctta aattagtgga tgtactaaga      7440
     tgaaactagc gagtaccaca cagttaccgg tagagcaaag aacgggattc taaagtttga      7500
     ggataatcat gtaaaaagta ttgataatta ggttaattca ttttccccct tatagttagt      7560
     tgtgtaaata attttgagac gaaatttacc cttacgaaaa tttagttgtt tctcaactaa      7620
     attttcgtaa attcagtgag gagtga                                           7646
//
ID   Gypsy-19_CQ-LTR repbase;    DNA;    INV; 2107 BP.
XX
AC   AAWU01010823;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_CQ_;
KW   Gypsy-19_CQ-I; Gypsy-19_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 418-418 (2011).
XX
DR   GenBank; AAWU01010823; Positions   23678   25784.
XX
SQ   Sequence 2107 BP; 527 A; 525 C; 536 G; 519 T; 0 other;
     tgtaaccgtt gtactaaatt ggtttatttg attctaaaaa acatcacaaa tttagcgctt        60
     tgcgcaaact atatttatat aacattttca tttattatta ttatcttatt aattgaattt       120
     aaaatacgac ttcgaagata gcccctttgt aaagacgctc actgcttcac agtgagtgac       180
     ggagtgcaag cactcgcgtt tacccctgat gattaggcaa cccccaatac gtgagttcgc       240
     tgcgcgcgct ttgacgagcg gtcgctcaaa ccgacacgtg attggaactc agttacgatc       300
     ttaagtggcc gcacgtgcag attctgaacc aagggtttga ctcgtttatc ttcgtgagaa       360
     ttggaaaagg agagcgtgta ggccgtgtac cttcagcgta ccgagtggga gcgggacaca       420
     ctattagaga gcgatatttc ccgaataggc taaaaccaac gcaacgttta cgtgcatccg       480
     gtgggttcgt acgtaacttc ggcgatcagt ttcccaggct cgagtctgag aaattttagt       540
     aactcgatca cattctccta acccgtggaa cgattcggaa gtgcagtgaa tttgctggag       600
     ttgtaacgta ggtaatctgc gcgaggttcg atctcgggtg ttaatttaaa gttaactttt       660
     cagaagctag gccgatagaa aagtagtgcg acagatagct agcttttgtg acctttgtgc       720
     gagaacctgc gaagaaaggt aatgtagtca gtgtgcgaaa tagtgcgtgc tctaaaacga       780
     tcgtttcgac ggtccgtgtt ccctttaggc agcgtggtca caagtttact tgtctccggc       840
     ggcttccctc gtccgcggac gggattgctg gccaagctac aaccctgtgg ccagccgcca       900
     cgccgtcaac atcgtggcag aaaacccccg gtcgtaccgc aaccttcgac cgagccactc       960
     cagtcacctg tggccttttc gacgtaaacg cctggccgca ccgcaaccta gttgccgcgg      1020
     cgatcttcgt cgattcgtga ggattcttca cgaatcaccg ctcgaaactg cctggccccc      1080
     aacaaccacg tggcccgcag cgaacgcctc gaacacgccg tgacgcggtc atggaccgca      1140
     ggtcggcaga cctgaagacc gaccacgtgg caaatcgatc ggttccagat gcctggtagg      1200
     tgagtcgatc atccgccaca caaccatcgt gatcgcacaa cagcagcagt agcaggtagc      1260
     agaactcgca gagcagcagt ctacggcgcc ggcaagggcg aagtagagga gaaagaacgc      1320
     gcacaacgac gacgacgacg acgggctcgt aagtacaaaa ctctgtgtgt tagttgtccg      1380
     tgtgcacatg tgacgtcccc tcgaaccaca gagttcgcaa gcatgtacaa cccgcgctag      1440
     cccgcaccgc tagccccccc aaaaacgccc cattgttgaa gatctggaga agaattaaga      1500
     gcacgcacac tgtaggatag ggtggtcgta attagaagat ggattgtaac tattagggaa      1560
     taaaactgaa ctcaaaaatg ttaatctgcg atctttaaat gccgtcttta ataaagtccc      1620
     tatttaaccc tactcaagtt gctttggttg atgcttggga aagaatttag ttatgagcgc      1680
     ttgcgctacg cttcagcggt ctgccgcgca ccggtcactc tgcgacacct ggtggtggga      1740
     tcagtaacta tcgatgatga atgagtattg atgttgggag cattcgttga gcacgttggt      1800
     tttaggtcaa ttcgggcatt atgggctcgg ataatactga agttcggtaa gtcggacgca      1860
     gggaaactgc ggggaaagct gaatcgttct ccaaacctct tctcacgagt aaactggacc      1920
     ttcctaagga agagtctcaa gctgggcaac tttagatcag gcgggtggtc ctctaacgag      1980
     gtggcgctta agctatccgc ttcttccagt gcgcttcggc gatctcgcac atttccctgt      2040
     gacattttct tggaattttt ccctgtaccg taccatgacg ttctggtcca acgtccgtac      2100
     ggttaca                                                                2107
//
ID   Gypsy-19_DAn-I repbase;    DNA;    INV; 5612 BP.
XX
AC   AAPP01019519;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DAn_;
KW   Gypsy-19_DAn-LTR; Gypsy-19_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5612
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019519; Positions  261647  256036.
XX
CC   Positions [4721-5197] - Integrase core
CC   'ATAG' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           744..2240
FT                 /product="Gypsy-19_DAn-I_2p"
FT                 /translation="MPIQRTPEQSGAEAIPNVCVICENVMENTQPCVITNC
FT                 KHIFHKSCMELRFHPDKENECPSCLAKVLKKDVRVVVGNCSPGAKPGEEKE
FT                 RQLNRPNTRSVVRQLQLEEGNVGTSQIRSEQRLNWAQSNPASESERSLNTR
FT                 PLNYEIPRNSPQRGRSQRGRPPRQFPRNNDNWVRPNIEHLVRETVDRMLSS
FT                 LVLRNGVENSMGQDQRDFDVPSPRAFSSGHTSNKVADIIQKWGVRFEGTAE
FT                 GLSVDEFLYRVKVLTREHLNNDLEAMAKNVHQLLTGKASSWFWRFHKRTET
FT                 FTWNQFCTGLREQYKENRSKTELREQIRARKQKPGETFDTYYEAICKLMDK
FT                 LSVEFEESELIELVQGNLLTDMKDRLLFEEIYSIDHLRRLVQRREHFLQEA
FT                 GRSLRNVTKSKEGGPYRVYAVEEIEENKSENNSLDISAIQRNPANITCWNC
FT                 GVTGHFWQDCLGDRRIFCYGCGKPDIYKPNCIYCKTSSENRKSGASQNNRM
FT                 SHQ"
FT   CDS           2735..5563
FT                 /product="Gypsy-19_DAn-I_1p"
FT                 /translation="MRYKGEEKEVELYVIPTIAQRLILGIDFWRTFQLAPG
FT                 IVGSIEPADSGQDFNTPKEDQYPLTAMELQQLEAVKEMFPNFEKQGLGRTS
FT                 LIKHHIDTGNASSVKQRHYPISPAVEKVLYTEIDRMLELKVIAPSKSAWSS
FT                 PIRMVIKPNKVRICLDARKLNEVTLKDAYPLQSIEGIFSRLPKANIISKLD
FT                 LKDAYWQIELTEEAKPLTAFTVPGRGLFQFEVMPFGLCNAPSTMCRLMDDL
FT                 IPPDLRYCVFGYLDDLCIVTDDFQSHLAVLVRIAQQFRKANLTLNVRKSHF
FT                 CVTKVNYLGYIIGNGGISTDPEKISCILNWPAPRNMKQLRGFLGICNWYRR
FT                 FIASFAELSFPMTELLKKSRKFTWTNEAQEAMEKLKVQLTSAPVLQNADFT
FT                 KKFFLHCDASDFGIGAVLVQLSDEGEERPIAYMSKKLSKAQRNYSVTEREC
FT                 LAVIAAIERFRGYLEMQPFEVVTDHSSLTWLIKQRKSATGRVARWFDRMQG
FT                 FKFTISHRKGKDHIVPDALSRMCDESIDSLEMIGPEIDLDSPAFMQSDYVE
FT                 LRLKVEQNLSKLPDLRIHEKFVYIRTEHATGNPDQEADSWKLWVPEPLRAQ
FT                 AIWQAHNSVVSAHGGMQKTIERLRRNLFWPGLSKEVRDYIRNCEVCKQTKA
FT                 PNQILRPPMGEQSISIRPFQRLYIDILGPYPRSKRGNTGLFIVLDHFSRYH
FT                 WLCPLKKATTGIINTFLEERIFCEFGVPESIVSDNGSQFKAKEFEAMLTKF
FT                 GIRHIFTALYSPQSNAAERVNRSLIAAIRSYLKNDQTDWDANLTRISSALR
FT                 SALHQSLGCSPYKALFGFNMINHAEDYRLLNKLSLLEESPTMDRQEKLLLL
FT                 RQEIQTNSRKAYEQNVKQYNLRSKFVSFKEGQEVFKRNFQLSNFSQNYNKK
FT                 LGPLFSKCRVKKKLGNAYYLLETLSGKELGTYHAKDIKC"
XX
SQ   Sequence 5612 BP; 1966 A; 960 C; 1172 G; 1514 T; 0 other;
     aagatttggc gcccatacgg tgaggcacgg tgaaaaggat tcgtaataga ttcaataacc        60
     gtcggcccgt ggaagagtag aacgttagag ccgaaataac atttttttat ttaggatttt       120
     gcattaacaa gcggaggctt attaattgcg accaaaggaa agaggttaac ttttcggaac       180
     actggtgcag aatactgttg aacatctaat tctgagtact catccacagt aaataaaatt       240
     gctcgttttg ctttcgtatg aaaattggtt gttaggatag aatatcgaaa tggtataccc       300
     ttctggaatt tggggagctt gaataatcga acaacccgac cgaagagtaa ggtatataat       360
     cagggatatt ttaaaagacc ggagtcaagc aacaaatatt catcaagtgg gatacatata       420
     agaaatgaat agaataggtt ctgttattat gttagtatcg gctggaacac aaaaacatat       480
     gcgagagcgt atttttgtcc gttgatataa gcgtagaaac aaaacctttt tgaagcattc       540
     tagtgtaacc taaggtaatt gaaatagacc aaacatatta attaaataga gaaaaaaaat       600
     aaataaccta aaaatttaga ggagggacag ttaacaatat gcagaaaaag aaaattaact       660
     actcacattt ccaacaaagg tcaacaaacg gaaactttta agtaatcaat ctatacaaat       720
     ataaaaaaaa atattaattt aaaatgccaa ttcaacgtac cccggaacaa agtggtgcag       780
     aggcaatacc gaacgtatgc gttatttgcg aaaacgtcat ggaaaatacg cagccatgtg       840
     taattaccaa ttgcaagcat atttttcata aatcttgtat ggaactgaga tttcatcctg       900
     acaaggagaa tgaatgtcca tcatgtttag ctaaagtatt gaaaaaggat gtacgagtag       960
     tagtaggaaa ctgttctcct ggtgcgaagc ctggagaaga aaaagagcga cagttaaatc      1020
     gaccaaacac taggtctgtg gttagacagc tccagctaga ggagggaaat gtaggtacgt      1080
     cacagattcg gtctgagcag cgattgaact gggctcaaag caacccagca agcgagagtg      1140
     aaagaagctt aaatactcgg cctttaaatt atgaaatacc aaggaatagt ccacaacggg      1200
     gaagatcaca gcgaggcaga cctccaaggc aatttccaag aaataatgat aattgggtac      1260
     gaccaaacat agaacaccta gttagagaaa cagtagatag aatgctttct tcattggtac      1320
     taagaaacgg agttgaaaat tcgatgggtc aagatcaaag ggacttcgat gtaccaagcc      1380
     ctagagcttt ttcctcaggg catactagca acaaagtagc agatattatc caaaaatggg      1440
     gagttcggtt cgaagggact gcggaaggat tatcagttga cgaattttta tatcgagtta      1500
     aagtgttaac acgagaacat cttaataacg atcttgaggc aatggccaaa aatgttcatc      1560
     agctattaac aggcaaagct agttcatggt tctggagatt tcataaacga acagaaacat      1620
     ttacttggaa tcaattttgc acagggctac gtgaacaata taaagagaac cgctcaaaaa      1680
     cagaattgcg ggaacaaatt cgagctcgaa aacaaaaacc tggcgaaaca tttgacacat      1740
     attacgaagc tatttgcaaa ctaatggata agctatctgt tgagtttgag gaatcagaat      1800
     taattgaact agttcaggga aatttactta ctgatatgaa agatagatta ttatttgaag      1860
     aaatatactc catcgatcat ttaagacggc tagtacaaag gagagaacac tttttacaag      1920
     aagcagggcg atctcttcgc aacgtaacga aatcaaaaga gggaggacct tatcgggtat      1980
     atgcagtaga ggagattgag gaaaataaat ccgaaaacaa cagcttagac atctctgcta      2040
     tacaaagaaa tccggctaac ataacttgtt ggaattgcgg agtaactgga cacttttggc      2100
     aagattgtct aggggataga cgtatatttt gttatggatg cgggaagcct gacatctata      2160
     agcccaattg tatttactgt aaaaccagtt cggaaaaccg gaaatccggg gcatctcaaa      2220
     acaatcggat gtcccaccaa taaataactc ggagtttaca aatttaaata gatacacact      2280
     tttaaataag aaactagaag agcgtatcat tacaactcaa gataatatac cagatgccaa      2340
     gatagaaaat gaggtagata ctaagtttag gccatatgaa gaacgtttga aaaattatta      2400
     tgaagttaga aataaaattt tttcggaaaa tataatccct cgaaaaagaa attcgattcg      2460
     gataaagaaa tattataaga acctttgtaa gaaacaacat agattaatat ctactatatt      2520
     tcaaaataat gcggataacc gaagttatgc tagtgtagaa tttttagatt ttacagaatg      2580
     ggggttacta gacaccggag caaatattag ttgtattgga gctgagttag caaaccaaga      2640
     ctttagtggt gtaggtggat ataaatcaat agtctcccag gttaaaacgg cggatgctaa      2700
     accacatcaa gtttcaggca tattaaaagt agcaatgaga tataaaggag aagaaaagga      2760
     agtggaactc tatgttattc cgacaattgc acagcgtctt attctcggaa ttgatttctg      2820
     gcgaacgttt caattagcgc ccggaatagt gggatccatt gagccagcag atagtgggca      2880
     ggactttaac acccctaaag aggatcaata tccgttgact gccatggaac ttcagcaatt      2940
     agaagcagtg aaagaaatgt ttcccaattt cgaaaaacaa ggtttggggc gaacgtcctt      3000
     aattaaacat catatagata cgggaaatgc gtcttctgtt aaacagagac attatcctat      3060
     tagtccagct gtggagaaag tcttatatac tgaaattgat cgtatgctag aacttaaagt      3120
     gattgcacca tctaaaagtg catggagctc acccattcga atggttatta aaccaaataa      3180
     agtccgaatt tgtctggacg ctcgaaaatt aaatgaggtt actctgaaag atgcataccc      3240
     actacaaagt attgagggaa tattttcgcg tcttccaaag gcaaatatta ttagtaaact      3300
     ggatctaaaa gatgcctatt ggcaaattga attaaccgag gaagctaaac ccttaacagc      3360
     gtttacagtg ccaggtcgag gattatttca attcgaagtt atgccttttg gtctgtgcaa      3420
     cgcaccgtca accatgtgtc gtctgatgga tgatcttatt ccaccagatc tacgatactg      3480
     tgttttcgga tatttagatg atttgtgtat tgttacagat gattttcaat cccatttagc      3540
     agtccttgta cgaattgcac agcaatttcg caaagcaaac ttaacgttaa atgttaggaa      3600
     aagccatttt tgtgtaacaa aagttaacta cttgggttac ataattggaa atggaggaat      3660
     atctacggat ccggaaaaaa tatcctgtat tctaaattgg ccggctcctc gtaacatgaa      3720
     acaattaaga ggtttcttag gaatttgtaa ttggtaccgt aggttcattg ctagcttcgc      3780
     ggagttgtca tttcctatga cagaactgtt aaaaaaaagt agaaagttca cctggacgaa      3840
     tgaagcgcag gaagccatgg aaaaattgaa agtccaactt acttccgcac ccgttttgca      3900
     aaatgctgac tttaccaaga agttttttct tcattgtgac gctagtgatt ttggcattgg      3960
     ggctgtgtta gtgcaattat ccgacgaagg agaagaaaga ccgatcgcat acatgtcaaa      4020
     aaaattgtct aaggctcaaa gaaattatag tgtaacagag cgggaatgtc tagcagttat      4080
     tgcagccatc gaaagatttc gggggtattt agaaatgcag ccatttgaag tagtgaccga      4140
     tcattctagt ctaacatggc ttataaaaca acgaaaaagt gccacgggaa gagtcgcccg      4200
     atggtttgat agaatgcaag gatttaaatt taccatttct catcgtaaag ggaaagatca      4260
     tatcgttcca gatgcgttgt ctcgaatgtg tgacgagtcc atagacagtt tagagatgat      4320
     aggacccgaa attgacttag actcaccagc ctttatgcag tcagattacg tagagctccg      4380
     attgaaagta gagcagaatc taagtaaact tccagattta cgtatacacg aaaaatttgt      4440
     gtatatccga acggagcatg cgactggtaa tccagatcaa gaagccgata gttggaaact      4500
     atgggttcca gaaccattac gagcccaggc tatttggcaa gctcataata gtgttgtgtc      4560
     tgcacacggc ggaatgcaaa aaactataga acgcttgcgt cgcaatctct tttggccagg      4620
     gttatctaaa gaagtcagag attacattcg gaactgtgaa gtttgtaaac agacaaaagc      4680
     ccctaaccaa atattaagac cgccaatggg agaacaaagt atttccatac gtcctttcca      4740
     aagactatat attgatattc tcggcccata tccccgtagt aaaagaggca atactggatt      4800
     atttatagta cttgaccatt tcagtagata tcactggctt tgtccgttaa agaaagctac      4860
     tacaggaatt attaacacat ttctagaaga gcgaattttt tgtgagtttg gagttccaga      4920
     gtctattgtt agtgacaacg gctcacaatt caaagcaaaa gaatttgaag caatgttgac      4980
     taagtttgga attcgacaca tttttaccgc gctatattct ccgcaaagca atgcagctga      5040
     acgagttaat cgctctttaa ttgcagctat tcgttcctat ctcaaaaatg atcaaacaga      5100
     ctgggatgcg aatttaactc gcatttcgtc cgctttacga tcagctttac atcagtctct      5160
     tggatgttct ccttataaag ctctttttgg tttcaatatg attaaccacg ctgaagatta      5220
     ccgattatta aacaaattat cacttctcga agaatctcct acaatggatc ggcaagaaaa      5280
     gcttttattg ttacgtcagg aaatacaaac aaatagtcga aaagcttatg aacagaatgt      5340
     aaaacagtac aacttgagaa gcaagtttgt gtcgtttaaa gaaggccaag aagtgtttaa      5400
     aagaaatttc cagttgagca actttagtca aaactacaat aaaaagttag gcccgttgtt      5460
     ttcgaaatgc agagtgaaga agaaattggg aaacgcttat tatttgctag aaaccctgag      5520
     tggaaaagag ctaggaacgt atcatgccaa agatataaaa tgctaattcc agctaatcat      5580
     gtctccggat tactcgacag attatctgtg gt                                    5612
//
ID   Gypsy-19_DAn-LTR repbase;    DNA;    INV; 2242 BP.
XX
AC   AAPP01019519;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DAn_;
KW   Gypsy-19_DAn-LTR; Gypsy-19_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2242
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019519; Positions  256035  253794.
XX
SQ   Sequence 2242 BP; 838 A; 381 C; 346 G; 677 T; 0 other;
     tgtaatggtc acctgtgctg cccattcgag tttcaaaaaa attagattag aataacgtct        60
     aatcttaacg aaactctcca cttttatcga taggtgttag caattttttt ttgttttatt       120
     cattcctaat gtgcatacta ggcgttagta cttaccttga cattagccct agcagcttat       180
     taggtgcctt caaaagtctt tttctttttt gagctgtcaa actaagcaga cgcacacctt       240
     agtaccagct acaccatatc cataaatcaa gtgggtgaaa cacgtgcaaa gtgatcacaa       300
     caaaataaaa caaattaaat ctgaaaaatc cccacacatc attggaaaaa taagtaaagc       360
     aaagacatca gtaaagtcgc aaacaaacct agcctgggat caggtaatga ttttcaagct       420
     cgccagccga atttttatct caaccttgtt tccataaggc gtcttctatg gccgaaaatc       480
     cacgagagtc ccacccgcac cacctggatt ccatacctgg atcattacac atagttttta       540
     tcaggatgag taaccctatc aaagataaaa aaaaacaccc acttagtcta tcccgtctac       600
     ctttattcgc aaatcaatac tgatacaccg gataggagaa atttcggata tcacctataa       660
     atataaaacg atatcaaagt atacaatagc gaacgagagt cgccttccaa tcgtttatta       720
     catttcggtt gttgttcaca aacacaaaaa ttaaattaca ttaaaatatt atgaacttat       780
     attgaactag aaattgaaaa aaaaattaga tgtaaaagaa atgaatacga aagaaattat       840
     agatatagaa aaataatagt cataattata ttcaattaca ttaaaatagt atgaacttat       900
     attgaactag aaatttagag aaaaaaaaaa aatatatata tatagtgaaa agaaattatg       960
     aattctatta aagtacatta aattctacga actcgaattg aactaaagaa aaacaaaaat      1020
     gtaaataagg aaaggcatgc aaaaagagaa ataatgtagt tgtaagatat atttaagaaa      1080
     ttcaacctct caactaatca gcccaacctc tacgagactc caacatgaag gccttcatcg      1140
     aggatcatca cattggggtg agtgaacaaa aaaaaaaata aaacctaaaa gataactaac      1200
     tacctaaaag agaaaatttt aaaagataac taaatgccta aaagagaaaa attttaaaag      1260
     atcagaatgt gtaggaggtt aaaaattcta agaactggtt tgtaagattt aaaagaaaaa      1320
     aaaaaaaaaa aaaaaaatgt atatgaaaaa aagaaaacaa attacctatc aatcgagcaa      1380
     ttatgctatt ctgccatgct catatcaata accactaata atctctgcca agccgataag      1440
     cttgcagaca gcaggtgctt gtttgttttg ctttcgtcat ttgttttttt ttgctagcct      1500
     aaaccttcaa gtgcatgcga actcaaatag agcaacttag caacttaaaa tttgttgtca      1560
     attttaaatc tcaaataatg aatgaggtcc accttattat tattattatt atactatatt      1620
     attaagatag gttttagcca ataatgttaa ttaaccaaaa attctaagat catacctgaa      1680
     ttgaacatga aattacttct cttttattat tgtaagatcc taaagttaag ctgaagtttg      1740
     tgaaaatata ttactttaaa aaaaaataga agtatgaggg agtaagtcag tatttccgtg      1800
     accttggaaa tgtgagtaga aatgataatt ggggtcttaa caacaattct cttaagacta      1860
     aggtagggtg ggtagtgaaa ccgtgtccga attctaacat cattgtcggc acattttttt      1920
     ttctttttct ctgttgtgat ttctttcctc cttgttatca tgcaattcct aagcttatct      1980
     tctcgggggc aatgacccca agttttcttg tttttttttg tgcgttctcc acgatcaagt      2040
     ggaaatttag tttcagtagg gactctttaa tgattcttgt agtgatcaaa tttactgata      2100
     ttagcaaaac ccaccccatc tcccgaaaga gctacactta ataagggtcc cgttgctagt      2160
     atctagtaaa ttatgcagta gctggatttg cctattatgg cagcccgaga aaaactttga      2220
     tacagctatg caggaggtta ca                                               2242
//
ID   Gypsy-19_DAzt-I repbase;    DNA;    INV; 6765 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6765
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 800-800 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           628..1794
FT                 /product="Gypsy-19_DAzt-I_1p"
FT                 /translation="MNTEARTDLTTDLIKQLIAIQISKVNKDITDLKKQLE
FT                 ENTDHVEDYQAEVINDLVRDDTTLKVIESLPNFSGGLNQYVGWREAAENAM
FT                 RLYKRGSKQYFIALTILRNKIIGSAHDSLTNHGTVLNFDAILARLDFVYSD
FT                 KRPIYIIEQELSVLRQGNFSITDFYNEVNKKMTLLINKTIMTHGKDSEVTR
FT                 QTNNKIRENALRIFITGLNGGISEVLFSLNPPDLPNALAKVQELQANNRRA
FT                 QFAYQFSQPPKKPTNFQNTLRFPQRPPRVYESTYEPRNPTWGKPHFSNYRQ
FT                 QNLAPEPMEVDESIQVQNRTNNNQPNNNPYRGYNRYPRGNSFNYNYHRTNM
FT                 ESNNQVNQSSPVKRKPADSINQQQPVNKAMRLNNIDEDHFLDQPQK"
FT   CDS           5337..6752
FT                 /product="Gypsy-19_DAzt-I_3p"
FT                 /note="env."
FT                 /translation="MFLQMFVLTFVLITASEIIDYTHSDYLLLKDDRKVYT
FT                 YDSYADLYHITNLSLYKEIINLESKYVNKSINTDDEWEISMDLNLLKLLIS
FT                 ELTPNRIRRGINELGTIWKWVAGTPDHDDFIKIQNKVNDLVANNNKQFTLN
FT                 SKLFKEIEMLSITLKNLVFSEETILRKHRLKLITFDLLNLVDTITLAKINI
FT                 LNTKILNKQEIEEIYKHEKEPVELTDLLDVASFQIIRNENLIVINIKYPQI
FT                 TNVCKLYHARSISQSDGKLIINNNICECGGQYYLMNNLRKEIFNYYAKLSF
FT                 ENNCFTKLLNGHKANCTKIREKNKKIDFVQDGAILVSGTNIADNTSLEGTY
FT                 LLLFNDSIKINNKTYINEKNKIWKFVSQHKYSNFDLVDYVHSDDKTLSFDN
FT                 VNILNPFVKIGNTGLPLTTILLIIFLLVPMLYFGYKLIMLIHSRIMKPTQA
FT                 TVENDILQLSEEIRIISELQNVSGRHI"
FT   CDS           1767..5297
FT                 /product="Gypsy-19_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="GPFFRSAPEVGLPYLIRTDRSLNRNLKVLIDTGATSC
FT                 YIKKGIYHNRNRLPIYKKVATVNGYSIIKYYHKITIFNTAQIFYEIEGMGA
FT                 DLLVGYNLLKKIGAVIDTQKGTLIYNNIEEQIVLDETIALNKLTLSGGKII
FT                 LPLKEFIIKKYFEKEEEKRNESIEVEQSKVSLGSMNPEHADVELSVKQSNK
FT                 SLGLKYPEHAVVDLSDIKRNNSLGLQNPEHADVELSVKQSNKSLGCKHPEH
FT                 AVVDLSDIKINNSLGIQNPEHAVVELSDLKLNNILNNKEENLEGLREEIIT
FT                 IIIENHENINLRLPFRTDIKGEINTEHDRPVYGKQYPYAYSVNDFVNNEIS
FT                 KMLDDGIIRPSKSPYNSPVIVVPKKGVNEDGTPKHRLVIDFKKLNDNTIPD
FT                 RYPMQDPSVILSNLGKAKYFSTIDLESGFYQILMRESDIEKTSFSINNGKY
FT                 EFLRMPMGLTNAPRIFQRAMDDILREQVGKTCHVYMDDIIVFSKTIKQHYD
FT                 DIIQIIKILQMANMKISLEKSKFFQLETKFLGYIVSHNVIKTDPEKIDTIQ
FT                 KYPAPKNIRELRSFLGLTGYYRKFVRNYATIAKPLTKYLSGINGKVSKRAS
FT                 KRTLIQLDEPALDAFNNLKDSLISHIELVQPDYNKKFTLTTDASDIALGAV
FT                 LSQEGNPITFISKTLNKTEQLYATNKKELLAIVWALKNLRNYLYGVSGIEI
FT                 QTDHQPLSFSISPNNPNIEMKRWYYFIESFAPKIVYKPGSTNVVADALSRI
FT                 QINNLTSSELEQSEIDSDSNTQHSAESSFENIIQETKKPLNQFKQQLLISK
FT                 ARFTVHEQVKVHDNTRHIIEFNEIDDLLTILKEFIQPNLTTGIHCTLEDLF
FT                 LIQKVLKENFVNKFLFTRLFLQDIENPEDKALIIEETHCRAHRGLDENYKQ
FT                 ITRLYYWPNLYKKLKEYIKSCDICHKNKYNRHPVKVPIGVAPIPTKEGEQL
FT                 HLDIFYAQNMTFLTCIDSYSKFLVVKKIQNKLNIEHKVLDLLQHFPLATSL
FT                 MTDNEPSFTSAQFRSFLQRSNLTIYYADPRHSTSNGQVERVHSTLTEIGRC
FT                 IREELNLTDNTEIIMRAAQKYNLSIHSTVKQMPYDILFNKIEHGSIPILLK
FT                 SAQEKMLTVHNRDRREKDYKIGEVIYEKRFGERNKLQPRYKKQIVKENQNN
FT                 KVIINNRNRIIHKDNIKY"
XX
SQ   Sequence 6765 BP; 2734 A; 1130 C; 1148 G; 1753 T; 0 other;
     ggcgcccaac gtggggccac gcgtattaaa agcaccgaaa agtaaaaagt gctgcgtggt        60
     tcaaaaaaaa cccaaaggat aattaataaa tgtaataagt cctttaatta aaacgcggtg       120
     tgacatagta caatgacata agaagaatag tgagagggga agtgaaagac aaaacattta       180
     aacggaaagc tcggcgcata ccaacaccaa ataaaccaac atacaaacgg agctgaaggg       240
     aggaccctcg cttctatcaa taatctacat accaaaaaaa caaaaaagac tctaaacatc       300
     gaagaaggaa gacccctgga aaaagttctc taaacatcga agaaggaaga cccctggaaa       360
     aagttctcta aacatcaaaa gaagaaaaga ccccagtgag aagactacta cagactaaac       420
     gaagacgtaa atcccaaaga aggacgaccc ctaccggata tttcgtgagc atcaagaata       480
     aattttattt caaaggcaga aaatttgaaa aaaaaagtta taaataagaa aatatctaaa       540
     tattatcata attatagtgt ttgaggttga agaatatatt aaaaattaaa agtggatcaa       600
     ctaattttgg atttagaaaa attaaagatg aatacagaag caaggacaga tctgactaca       660
     gatctaatca agcaattgat agcaattcaa atttcaaaag tgaacaaaga cataacagat       720
     ttaaagaaac aattagaaga aaacacagac catgttgaag attatcaggc agaagtaatt       780
     aatgatctag ttagagatga tactaccttg aaggtgatag aatctttacc aaactttagt       840
     ggcggcctga atcagtatgt aggatggaga gaggctgcag aaaatgctat gcgattatat       900
     aaaaggggaa gcaagcaata ttttattgca ttaactatat taagaaataa aattatcgga       960
     tcagcacacg attctcttac taaccatggg actgttttga attttgacgc cattctggca      1020
     cgactggact ttgtctatag tgacaagcga ccaatatata tcattgagca ggaattaagt      1080
     gttctcaggc aagggaactt ctccattaca gatttctata atgaggttaa taagaaaatg      1140
     actctattga ttaataagac aatcatgact cacggaaagg acagtgaggt taccagacag      1200
     acaaacaaca agattagaga aaatgcctta cgcattttca ttaccggatt aaatggtggt      1260
     atttccgagg tactattctc actgaatcca ccagacttac caaatgcttt ggctaaagtg      1320
     caggaactac aagccaacaa tagaagggca caatttgcct atcaattcag tcaaccccca      1380
     aagaaaccaa ccaattttca gaatacctta agatttcccc aacgaccacc cagggtatac      1440
     gaatccactt acgaaccgag gaacccgaca tggggaaaac cacatttctc caattacaga      1500
     caacaaaatc tagccccaga gccaatggag gtggatgaaa gtattcaagt tcaaaaccga      1560
     acgaataaca atcaaccaaa taacaatccc tacaggggat ataatagata tccccgcggg      1620
     aatagcttta actataatta tcatagaact aacatggaat caaataatca ggttaaccaa      1680
     agctccccgg taaagagaaa gccagctgat tcaataaatc agcaacagcc agttaataaa      1740
     gctatgcgat taaacaatat cgatgaggac cattttttag atcagcccca gaagtagggt      1800
     tgccctactt aataagaaca gacaggagcc taaatagaaa tctcaaagtt ttaatagata      1860
     caggagcaac ctcctgttac ataaaaaaag gaatctatca taatagaaac agacttccga      1920
     tatataagaa agtagctaca gtaaatggtt actctataat caaatattat cataaaatca      1980
     caatttttaa cacagcacaa atattttatg aaatagaggg tatgggggct gatttgctag      2040
     taggttataa cctactcaag aagataggag cagtaatcga tacccagaag ggaacattaa      2100
     tctataataa tattgaggaa cagatcgttc tcgacgagac catagctcta aataaattaa      2160
     ctctttcagg aggaaaaatt atccttccat tgaaagagtt tataataaaa aagtattttg      2220
     aaaaagaaga agaaaagagg aatgaatcaa tagaggtaga acaaagtaaa gttagcttgg      2280
     gatcaatgaa tcctgagcac gccgacgttg agttatccgt caaacaaagt aataaaagtt      2340
     tgggattaaa atatcctgaa cacgccgtcg ttgatttatc cgacatcaaa agaaataata      2400
     gtttgggatt acagaatcct gagcacgccg acgtcgagtt atccgtcaaa caaagcaata      2460
     aaagtttggg atgcaaacat cctgaacacg ccgtcgttga tttatccgac atcaaaataa      2520
     ataatagttt gggaatacag aatcctgaac atgccgtcgt tgaattatcc gacttaaagt      2580
     taaacaatat actaaacaat aaagaagaaa acttagaggg tcttagagag gaaataatca      2640
     caataataat agagaatcat gaaaatataa acttacggtt accgtttaga acggacataa      2700
     aaggggagat aaataccgag catgacagac cggtatatgg taaacaatac ccatatgctt      2760
     attcagttaa tgatttcgta aacaatgaaa taagtaaaat gttagatgat ggaataatca      2820
     ggcctagtaa gagcccatat aactccccag taatagtagt accaaagaaa ggagtaaatg      2880
     aggatggtac tcctaagcat agattagtaa tagattttaa gaagcttaat gacaatacta      2940
     taccggatag atatcccatg caggatccat cagtgattct atctaatttg ggaaaagcaa      3000
     aatatttctc gaccatcgac ttagaatcag gattttacca gatattaatg agggaatcag      3060
     atatagagaa aacatctttt tccataaata acggtaaata tgaattccta agaatgccca      3120
     tgggtttaac aaatgcgccc agaatcttcc aaagagcgat ggacgacata cttagagagc      3180
     aagtagggaa aacctgccat gtttatatgg atgacataat agtgttttca aaaacaatta      3240
     aacaacacta tgacgatata atacaaataa tcaagatact acagatggct aacatgaaaa      3300
     tttccctaga gaaatccaaa ttctttcaat tagaaacaaa gtttttggga tatatagttt      3360
     cccataacgt aattaaaacc gacccagaaa aaattgatac aatacaaaag tatccagctc      3420
     cgaaaaatat ccgagagtta cgtagtttcc taggattaac gggatattac agaaaatttg      3480
     tccgaaatta tgcaactatc gccaaaccac taacaaaata tctgagtgga atcaatggga      3540
     aggtctctaa gagagcatca aagagaacct tgatacagtt agatgagcca gcacttgatg      3600
     cattcaataa cttaaaagac agcttaattt cgcacataga gttagtacaa ccagattata      3660
     ataaaaaatt cactttaact acagatgcat cagacatagc attaggtgcg gtgttatcac      3720
     aggaagggaa tccaatcaca tttatatcca aaaccttgaa taaaacagag caattgtatg      3780
     ctactaacaa gaaggaacta ttagcaatag tatgggcact aaaaaatctg cggaactatt      3840
     tatatggcgt gagcggaata gaaattcaaa cagatcacca accattgtcg ttttcaatat      3900
     caccgaacaa tcctaacata gaaatgaaaa ggtggtacta ctttattgag agttttgcac      3960
     caaaaatcgt atataaacca ggttcaacca acgtagtagc agatgcttta tcacgaattc      4020
     agataaataa tttgacaagc agtgaacttg aacaatcaga aatagattca gattcaaata      4080
     ctcagcattc agctgagagt agttttgaaa acataattca agaaactaag aagccattaa      4140
     atcagtttaa acaacagtta ctaatatcaa aagccagatt cacagttcat gagcaagtaa      4200
     aggttcatga caacacccga cacataattg aattcaacga aatagatgat ttattgacta      4260
     ttttgaagga atttattcag ccaaacctaa ccacaggaat acattgcacc ctagaagacc      4320
     tatttctaat acaaaaagta ttgaaagaaa atttcgttaa caaatttctc ttcacgagat      4380
     tatttcttca agatatagag aaccctgaag ataaggcact gattatagaa gagacccact      4440
     gtagagcaca ccgaggttta gatgagaatt acaagcaaat aaccagacta tattattggc      4500
     ccaatctata caaaaaactg aaagaatata tcaaaagctg tgatatatgc cacaaaaata      4560
     aatacaatag acaccctgta aaggttccga taggcgtggc ccccattcca acaaaagaag      4620
     gcgaacaatt gcatttagac atattctatg cacaaaatat gacattttta acttgcatag      4680
     attcctactc aaaatttttg gtagtgaaaa aaattcagaa taagttaaac attgagcaca      4740
     aggttttgga tttactgcaa cattttccgc tagctacttc attaatgaca gataacgaac      4800
     caagttttac ttcagcgcag tttagatcat tcctacaaag aagcaactta acaatatatt      4860
     atgctgaccc tagacatagt acctctaacg gacaggtgga aagggttcat tccacattaa      4920
     cagaaatagg acgctgcatt agggaagagc taaatttaac agataacaca gaaattataa      4980
     tgagagcagc acaaaagtac aacctttcta tacattccac tgttaaacaa atgccttatg      5040
     acatcttatt caataaaata gaacatggca gtattccaat actacttaaa tcagctcaag      5100
     aaaaaatgct aaccgtacac aatagagata ggagagaaaa ggactataag ataggagagg      5160
     taatttatga gaaaagattc ggggaacgaa acaaactcca accgcgatac aagaaacaaa      5220
     tagttaagga gaatcaaaat aataaagtta taataaataa cagaaataga ataatacata      5280
     aggacaacat aaaatactaa gaattttact tttattttat ttatgttttg cagaatatgt      5340
     ttttgcaaat gtttgtattg acattcgtac tgataacagc gtcagaaatc attgactata      5400
     ctcacagtga ctacttatta ctgaaagatg accggaaagt ttacacctac gactcgtacg      5460
     ctgaccttta ccatataacc aacttaagcc tttataaaga aataatcaat ttggaatcga      5520
     aatatgtcaa taagtccatt aacacagatg acgagtggga aatttcaatg gatttaaatt      5580
     tgttaaagtt attgatttca gaattaaccc caaatagaat tagaagggga attaacgaat      5640
     taggtaccat ttggaaatgg gttgctggca cccccgatca tgacgatttt attaagattc      5700
     agaataaagt aaacgatttg gtcgcaaata ataataaaca gtttaccttg aattccaaac      5760
     tctttaaaga aatagaaatg ctatcaataa cgctaaaaaa tttagtattc agcgaagaga      5820
     caatactcag aaagcaccgt ttgaaattaa taacatttga tcttctaaac ttagttgata      5880
     ccataactct cgcaaagata aatatactaa atacaaaaat cctgaataaa caagaaatag      5940
     aggaaatata caaacacgaa aaggagcctg ttgaattaac agacttactt gacgttgcat      6000
     cttttcaaat aatacgaaat gaaaacttaa tagttattaa tattaaatac ccccaaatca      6060
     ctaacgtatg taaactctac catgcgaggt ccatctcaca aagtgatgga aaattgatta      6120
     taaataataa tatttgtgaa tgtgggggac aatattattt aatgaataat ttaaggaaag      6180
     aaatatttaa ttactatgct aaattaagtt ttgaaaataa ttgttttaca aaattactaa      6240
     atggccataa agccaattgc acaaagataa gagaaaaaaa taaaaaaata gattttgtgc      6300
     aagatggtgc cattctagtt tcaggcacca atatagcaga taatactagt ttggaaggta      6360
     cttatcttct tttatttaat gattcaatca aaataaataa caaaacgtac ataaatgaaa      6420
     agaataaaat ttggaaattt gtttcgcaac ataaatatag taattttgat ctagttgatt      6480
     atgtacattc agatgataag acactttcct ttgataatgt caatattttg aatccatttg      6540
     taaaaattgg aaacacagga ctaccattaa caactatttt gttaataata tttttattag      6600
     tacctatgtt gtatttcgga tataagttaa taatgttaat tcactctaga atcatgaaac      6660
     ccactcaagc aacagtcgaa aacgatattt tacaattatc agaagaaatc agaattattt      6720
     cagagcttca aaatgtatcg ggacgacaca tttaagtaag ggggg                      6765
//
ID   Gypsy-19_DAzt-LTR repbase;    DNA;    INV; 613 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-613
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 823-823 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 613 BP; 197 A; 128 C; 94 G; 193 T; 1 other;
     agttaacgta accaattcca ttagcttctt atacgattta taaacaatct ttggtttcct        60
     cagattcaat atctttgctt ccccagattc aatctcaatc tttgccttat gatttgtaaa       120
     caatcttggg cctgccaaat tcaatttcga tctttgcctt tggctcccac ttaattaaag       180
     atcgaacttt tctcacaccc gtctaaagtg gaaaacaatc tcagcccaca gccggctttt       240
     ataaacaatc aaacacccgg ttttcgtaaa cattcgaaca cccggctttc tgcagtttct       300
     gcatttttac catttctcga ttctcgagct agatgacgga atcgaatcaa taattttgtt       360
     tatatgaaag aggaccaaag aggtttcatg gtttggagat gaaattagtt aaggcagtct       420
     tgatcgagga tcgaactgaa tcagttgagc taaaaataac tagcaagtac gcgccgggac       480
     tataagcaat ccgagaataa atgtaatacc ctcaataact atcataagtc ttgttcaaac       540
     tataaatcga gttgtgaaat aaaataaaaa ttattttttt aaaaacgcaa ccsgccaccg       600
     ctataattta att                                                          613
//
ID   Gypsy-19_DBp-I repbase;    DNA;    INV; 4743 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4743
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 685-685 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..1095
FT                 /product="Gypsy-19_DBp-I_1p"
FT                 /translation="MSQLGDFDSVLRALKTEKKKNVDLLHMFVYENNGDRH
FT                 NRKRLRNFQGFDFAKDDEEFGQKVSYVAENLSNNDLAVICNILGLQHDKDD
FT                 LMVYIFRNLQAGNLLPDAGKENDEDDEXEDEEENDESGIPNRVITRAREQE
FT                 RAENKALNSSDEEEEFRSVGSNTQQQKKKRAXAKVSTVTSENNDVSSVKSF
FT                 GAVSPRFSVNFRDIEDSIRPFSGDDTLAVEVWVHDFEDMASIMYWDDLQKF
FT                 IFAKRSLKVLPKCL"
FT   CDS           1394..4306
FT                 /product="Gypsy-19_DBp-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MKKFAKTSGKSKNQDEKFKYLNAKDSSGHKDVSGPKK
FT                 VNCFNCGALGHTSAQCANRSNGRKCFNCNNYGHISKDCTVGKIEPVXNPIN
FT                 MRKVSGEKLPMCKEIRMQRNKYTALIDTGSKYNIMSETVYVSLNKPMLNAV
FT                 NIVLVGFGNQNRVKPFGSFEEEFEVDGQVFRENFLVVSSNFLDVEVVLGAE
FT                 FCNXAEIQINRDGIKIKKPDNKDLDVEIGALMKINVENDENVNINIDKXXS
FT                 FEAQREVNDLIKNYKPVNTKSTNVVMRIVLKDDTPVHSRPRRFAFSERCVI
FT                 DDQVEQWLKDGIIEHSESEYSSPVVLVKKRDNSARLCIDYRRINKVIVRDL
FT                 FPLPLIEDQLDRLQNAHIFSTLDLKNGFFHVNVEKDSRKFTSFVTHNGQYQ
FT                 FLKXPFGLTNSPGVFQRHVNAIFRDLTRSGIAIPYVDDIIVPAENERQAVT
FT                 NLKIVIRRCEEFGLVINLKKCCFLKKKIEFLGHVIQDQKIAISDXKTKAVT
FT                 KFPVPTNQKQLQSFLGLVGYFRKFILDFSIIAKPLTDLLRRDAKFVITXRE
FT                 IAAVDKLKNLISQKPVLKIFHPQHETELHTDASIDGFGAVLLQKCPSDSQI
FT                 HPVYYMSKKTTDAERKXSSYELEVLAVVEALRKFRVYLLGMNFKLISDCNA
FT                 FTKTMEKREVCTRVARWILELQEFTFDVEHRSGTRIRHADALSRYPVMMIS
FT                 DETLHSQLRHIQSQDEELKAIIDILNEKPSHNNFFMNSGLLYKLVDDDELI
FT                 VVPPVFQREIIRQAHERGHFSVKKTKEIISKKYFIPKLEEKIQRQIRCCIP
FT                 CIVSNRKLGKKEGELHPLPKEAEPLHTFHIDFLGPLESTHKAYKHILAVID
FT                 GFTKFCWLYPTKTTSSKDVIARLEAQSAIFGNPVQIISDRGTAFTSDEFKQ
FT                 YCSKENELHAITTGLPRANGQVERLNATIVSVLSKLSIEDPSKWYKFVSDV
FT                 QQTINSRTVEYTHNSI"
XX
SQ   Sequence 4743 BP; 1571 A; 882 C; 1081 G; 1190 T; 19 other;
     caaatatggg ggctcaacct acgtgataaa gtgaagttaa taaaacgatg aacatattaa        60
     tttaaaacga cgaaaagtgt aaaagtaaaa gtaamwaaag aaaagtgcta aaacgctgta       120
     ttgtgaaatt aaaaacgacg acgacgccac acacacaact ctgatctaca cgcatacatt       180
     tacaacgacg catgagtgta tgtaaacgac gggtagagaa aacgtgaaaa agaacgacga       240
     acacttgcgt aagaacgacg tgaaacaacg tgttaaaacg ggaattgatt ttcgcaatac       300
     aaaaagcttg actataccka ggctgcamaa atgtctcaac tcggtgattt tgattccgtg       360
     ctgcgggcat tgaaaacgga gaagaagaaa aatgtggatc ttttacacat gtttgtgtat       420
     gaaaacaacg gtgatcggca taataggaaa cggctgcgaa attttcaggg atttgacttt       480
     gccaaagatg atgaagagtt tggacaaaaa gtttcatatg ttgctgagaa tttgtccaac       540
     aacgatttgg ctgtaatttg caacatattg ggattgcagc atgacaaaga tgacctaatg       600
     gtctatattt ttcgaaattt gcaagcggga aacttactsc cggacgccgg taaagagaac       660
     gacgaagatg acgaakatga ggacgaagag gaaaacgatg agagtggtat accgaaccgt       720
     gtgatcacta gagccagaga gcaagagaga gctgaaaaca aggctctgaa ctcgagcgac       780
     gaagaggaag aatttcgctc tgtgggaagc aacacacaac aacagaagaa gaagagagcc       840
     aawgccaagg tctctacagt cacgtccgaa aacaatgatg tgagctcagt gaaaagtttt       900
     ggagcggttt cgccacgatt ttcggtgaat ttccgggata ttgaggactc aattagaccc       960
     tttagcggtg acgacacgct tgcagtggaa gtgtgggtgc atgattttga ggacatggct      1020
     tcaattatgt actgggatga tcttcaaaag tttattttcg cgaaacggtc actcaaagtc      1080
     ttgccaaaat gtttataatg agtgaacgtg gtataagaag ctggcaaatg ttaaaaaatg      1140
     ctctgatcaa cgagtttaaa gcggaagtga atggtgcaca aatacataaa atgctgtctg      1200
     agagaaaaat taaaaacagt gaaagcgtgc aagaatatct tctcaaaatg aaagagattg      1260
     cttctcgtgg aagcgtagac agcagtgcgc ttatgcaata tgtgatcgat ggcataaacg      1320
     atctaagcgt taaacaaatc aatattgtat aatgcgaagg acatgaaaga ttttaaggag      1380
     aagttgaagt gctatgaaaa aattcgcgaa aacatccgga aaatctaaaa atcaggacga      1440
     gaagtttaaa tatttaaacg cgaaagacag tagtggccat aaagacgtgt ccggtccaaa      1500
     aaaagtaaat tgttttaact gcggtgcttt agggcataca tccgctcagt gcgctaatcg      1560
     aagtaacggc cgaaagtgtt ttaattgcaa caattatggg catatttcaa aagactgcac      1620
     cgttggcaaa atcgaaccgg takcaaatcc gatcaatatg cgtaaagttt ctggggaaaa      1680
     attaccgatg tgtaaggaga ttcgtatgca gcgtaataag tatacggccc tgattgacac      1740
     tggcagcaaa tacaacatta tgagtgaaac agtctacgtg agtttaaata agccaatgct      1800
     gaatgcmgta aacattgttc tcgtcgggtt cggaaatcaa aacagagtaa aaccgttcgg      1860
     ttcatttgaa gaagagttcg aagtggacgg gcaagtcttt cgagaaaact ttcttgtagt      1920
     ttcatctaat tttttggacg ttgaagttgt gttaggggca gaattttgta acamtgcgga      1980
     aattcaaata aatcgcgacg gaataaaaat caaaaagcca gacaacaagg acttggatgt      2040
     ggaaataggg gcgttaatga aaatcaatgt tgaaaatgat gaaaacgtga acattaacat      2100
     tgacaaagaw gmaagtttcg aagcacaacg cgaagtgaac gacttaatta aaaactataa      2160
     gcctgtgaat acgaagtcaa ccaacgttgt tatgcgtatc gttttgaagg atgacactcc      2220
     tgtgcactcg cgtccgcgtc gattcgcatt ttccgagcga tgtgtcattg atgatcaagt      2280
     tgaacagtgg ctaaaagacg gtatcattga acattctgag tccgagtaca gcagtccagt      2340
     cgttctcgtg aagaaacgtg ataattcagc acgtctatgc atcgattaca ggagaataaa      2400
     taaggtaata gtacgagatt tatttccctt gcccctgatt gaggaccaat tggatcgtct      2460
     tcaaaatgca cacatattta gtacactgga tctaaaaaac ggatttttcc acgtaaacgt      2520
     tgagaaggac agccgcaagt ttacatcctt cgtaacgcac aatggccagt accagtttct      2580
     taaagwccca tttggtctca cgaattctcc aggtgtgttt caaagacacg tcaacgccat      2640
     ctttcgagat ttgactcgtt ctggtattgc gattccatat gtagacgaca ttatagttcc      2700
     tgctgaaaac gaaagacaag ctgttaccaa tctgaaaatt gttattcgac gttgtgaaga      2760
     gttcgggtta gtaatcaatc tcaaaaaatg ctgctttttg aagaagaaaa tcgagtttct      2820
     aggtcatgtg atccaggacc aaaagatwgc tatctctgac gamaaaacca aagccgtgac      2880
     gaagtttccg gttccgacaa atcaaaagca acttcaaagc tttctgggtt tggttgggta      2940
     ttttaggaag tttattcttg atttttcgat catcgcgaaa cctttaactg atcttttaag      3000
     gcgcgacgca aagtttgtca ttactgmtag agagattgct gctgttgata agcttaagaa      3060
     tttgatttca cagaagccgg tgcttaagat cttccatccc caacatgaaa cggagttgca      3120
     cacagatgcg tcgatcgatg gtttcggagc agtcctactt caaaaatgtc cctccgatag      3180
     tcagattcat ccagtctatt atatgagcaa gaaaacgact gatgctgaga gaaagktttc      3240
     cagttacgag ttagaagtat tggcggtggt tgaagctctt agaaaattta gagtttatct      3300
     tctcggtatg aacttcaaat tgattagcga ttgcaacgca ttcaccaaga ccatggagaa      3360
     aagagaagtg tgcactagag tcgctcgttg gattctcgaa cttcaagagt ttaccttcga      3420
     cgtggagcac agatcgggaa cacgtatacg tcatgctgac gctttaagca gataccctgt      3480
     aatgatgatc tccgacgaaa cattacacag tcagttaaga catatacagt cgcaggatga      3540
     ggagctgaag gcgattattg acatcctgaa tgagaagccg agtcacaata attttttcat      3600
     gaattctggt ctcctttaca agctagttga cgacgatgag ctgatagttg tgccaccagt      3660
     ttttcaacgc gaaattatca ggcaggcgca tgaaagagga catttttctg taaagaaaac      3720
     caaagaaatt atatccaaga agtatttcat tccgaaactg gaagaaaaaa tacaacggca      3780
     gatcagatgc tgcattccat gcatcgtctc taaccgtaag cttggtaaaa aggaaggaga      3840
     gttgcatcct ttgccgaaag aagcggaacc acttcacacg tttcatattg atttcttagg      3900
     gcctctcgaa tcaacacata aggcgtataa acacattcta gccgttattg atgggtttac      3960
     caaattctgc tggctgtatc caaccaaaac aacttcttca aaagacgtca tcgctaggct      4020
     ggaggcacag agcgcaattt ttggcaaccc tgtgcaaatc atctccgacc gtggtactgc      4080
     cttcacatcc gacgagttta agcagtattg tagcaaagaa aacgaacttc atgcaataac      4140
     gactggcctt cctagagcaa acggacaagt ggagcgcctc aatgcaacaa tcgtatcagt      4200
     cctatccaaa ctatccatcg aggaccccag caaatggtac aaatttgtga gcgatgttca      4260
     gcaaacaatt aactcgcgta ctgtagagta tacacacaac tccatttgaa ctacttgtag      4320
     gcgtaaagtg cggacaaaac tgacgtacag attaaggaaa ttatacatca ggagttgatc      4380
     caagcgtttc aggatcatag agamgatagc caagcaacag attcttgtca tgcaggacga      4440
     aaacaagsac acgtataatc tcagacgcaa acctgcagca aaatacaaag tcggcgatat      4500
     tgttgctata aagcgtactc aacttggcgg tgggcttaag ttgaagccaa agtttttggg      4560
     accttaccga gttacaaagg tgaagccgaa agatacctac gatgtatcga aagatactgt      4620
     atctgctgat gggccgagat tcactaccac ttgtgctgag tacatgaagc cgtgggttca      4680
     tctaggtctt gaggacgacg acgacgacgc attcgggacg aatgcataga aggatggccg      4740
     agt                                                                    4743
//
ID   Gypsy-19_DBp-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-262
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 686-686 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 262 BP; 106 A; 51 C; 40 G; 62 T; 3 other;
     tgtttccacc tatcccatcc ctatcgtgga gagcagattg ggkagaagtt ctgaacgaga        60
     aamcgacgac gaaagacgcg agattacgac gagcagcaga acaattmaac aaagacgaaa       120
     aaggcgcgat ttaaaccaat taaaaacgtt taacttactt tatattctat aactttcaat       180
     atataatcaa ataaacatta caataaaaca ttaaaataaa actagtggga ctttctcatt       240
     ttacaaggaa acaccaatcc ca                                                262
//
ID   Gypsy-19_DEl-I repbase;    DNA;    INV; 6682 BP.
XX
AC   .
XX
DT   20-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DEl-I.
XX
NM   Gypsy-19_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6682
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 455-455 (2012).
XX
RN   [2]
RP   1-6682
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           654..2057
FT                 /product="Gypsy-19_DEl-I_1p"
FT                 /note="Gag."
FT                 /translation="IKLFAAHISIPKMTEQDLADRLANLTGPSSASSTQIN
FT                 TRIMTERDIEEKIKTILETNLSRLVKEILNPNKDFSKYTDQTIKRELTHNL
FT                 SELDKLPDIVRTLRDFSGNKSEYSSWRKSVERVLKIYENRIGSPKYYGILL
FT                 AIRNKITGQADAVLESYNTPLDWTAISKCLTAHFADKRDLKTLEYQLYALN
FT                 QGNNTIDEYYQAVYQQLSLILNQIGSLDASQETIQSLTAMYREKALDTFVR
FT                 GLNGNLAQLLAIKEPHDLGHALHLCSLLENQNARNNQTPKTPYLGRAPMLP
FT                 PKPQQPYRMVAVKQNFHPHLYHNPNQSGKPLITQTNQFKSYSQPYTNQSGV
FT                 VASYNIPKPPPRPQPKPVPMDVDQSVRSRHINYMNKPANNDYAGKRPLSTA
FT                 NAPNNNKMPRQFHIQPETGSNAQQNSDEASSSSEQEYYQLAEENNVNELQE
FT                 EYVWQSDNEQQEYIDMSELYFLE"
FT   CDS           2012..5185
FT                 /product="Gypsy-19_DEl-I_2p"
FT                 /translation="RTTRIHRYVRTLFFRINRSSLPYFKVTTGNGKILKFL
FT                 IDTGSNQNYIQNQLVPNPKPNENTFSVSSVGGNNKITQHAILKLANISDTP
FT                 MKFFLLDTLKTFHGILGNDTMKRLGAIIDVKNDILILGNKRKIKIHQLATQ
FT                 AVNTIGPQVSHMTESQKSIIKLLVQSHKILFADPDSKLAYTTKVVGEIRTS
FT                 SDSPVYGKHYPYPISLKQEVEKQITEMLRDGIIRPSRSPYNAPVWVVPKKS
FT                 GQSEEKKYRLVIDYRKLNEVTISDRYPIPEIGEIIAQLGDNKYFSVLDLKS
FT                 GFHQIPLKDTDIEKTAFAVNGGKYEFTRLPFGLKNSPSIFQRALDDILREY
FT                 IGKICYVYVDDIIVFSKNEVEHGKNLERVFSTLQNANMRVQIEKCHFFKNE
FT                 VDFLGYTISENGVKTNIDKIKAITKFPVPKTLKDLRSFLGMTGYYRRFIKD
FT                 YAKIAKPLTILLRGEEGRISKTKSSRTAINLSKDAITAFEKLKNTLVSREV
FT                 TLAYPDFGKEFQLTTDASSYAIGAVLEQNHRPITFISRTLSKTEENYATNE
FT                 REMLAIVWALQSLRHYLYGYSKVVIYTDHQPLSFSNSVNNHNAKLKRWRDL
FT                 IGEYNHEIRYKPGVANVVADALSRAPAEINSISSSASANSDESSSHNLIFS
FT                 VEAPINVFKNQLLLLTADTXSYSFEMPFPTYHRHIIKQKSYTEEKLIAILT
FT                 SKLDPKLINGIITSEEVMGKIQNIYPTYFKSYKVRFTQNEIDDVTSESQQN
FT                 EIIILEHKRAHRDAKENKLQILKNYFFPQLTKKIQAIVQACQTCKESKYDR
FT                 HPPKGEIQPTPIPNYPGEIVHIDIYITEKHRVLTGIDKFSKYVQVKILESR
FT                 ASEDIKNPLREMLIAFGMPKWIIMDNERSFGSAAIKFMLEDELKISLHTTA
FT                 PYASTSNGQIERFHSTLSEIMRCLKKDNGSISFEDLIFKAVQEYNKSIHSV
FT                 TKERPIDIFFRSTISSSTEDIEKKREEIKKKIKNKQTADLEYHNQGKILPK
FT                 LFKPGETVHVKIDKRLGTKLTPRYKTEKVAENRTTTIKTQTGKIIHKNNIR
FT                 T"
FT   CDS           join(5497..5991,5972..6670)
FT                 /product="Gypsy-19_DEl-I_3p"
FT                 /note="envelope."
FT                 /translation="MEMADHHDYQILEDKINEQLENNNRQVVINRLINQKI
FT                 NQLTNATNAMLKITQSSEEIINQKANILKYKIQLIKEEIINIIYAITWAKS
FT                 NTINSFVLTNTETKIVEEIFKKENNLFFNIEELLEFARIKLATNGNDLIYI
FT                 ISLPTIESDNCRTLKIKAIKKSPNNQKKAQIINDIKYENFLECKRQLLAII
FT                 KPCESYNDKTICNSENLLDLSNDTCVNALLNLREPECKMINNQHIPDFEEI
FT                 LPGTILLNNFNGPVSLDEKLLQLQGSFIIQYRNSTVTIGETIFKSNEINVV
FT                 EPEPPLFQLLGEKTKLEEVLSLQMVKELNINNTKALEKLRSKATIESSVSY
FT                 GSAIILLLLIIGSITELLRRRRSTERTPVSVPETQEKPTHSGPVLYYVATE
FT                 DSRV"
XX
SQ   Sequence 6682 BP; 2666 A; 1343 C; 1090 G; 1582 T; 1 other;
     ggcgcccgaa cagggacctg attaaaaccg cgaaaggata acaagttccg cgtctcgcga        60
     agttcagaaa gtaaaaaatt ctgacgtttc gtttcaaacc tccgcctaat cagtgagaag       120
     taaaaaacca aaaataccga gattcggaag tgcaaaagtg ccgtttaaaa aacgccgcaa       180
     attgtcactc ctgaaaaaaa aacaggactt gtacccggtg gaataatcag gccaaatttt       240
     atcgccgtga tccctttagt atccgttcga agggaacgtg aattaaggta cagagaaggc       300
     cccttagtaa actcacactc aggagagatc gttgcagagt gggataaaac ggaatctgcc       360
     gagcctgtca tcacgagagc acgccgagat atgttactac tgtaagaata gttttaagca       420
     atttattaac aaaaacataa aaaatattta atcgaaaaat attcaaagaa gaaaaagttt       480
     tacccaaata taaagtgtag aagacatatt ttagtaagtt aaaaagaaaa aatccaaaat       540
     atagggaaaa taaaaattcc cacacaataa ttacaaaggt aataaaaaat cgcacaccct       600
     aattcttaga agacaacttc cgaattctga ataactaaaa ttaaaaaaat taaattaaac       660
     ttttcgctgc tcatatatcc atacccaaaa tgaccgaaca agatttggca gacagactcg       720
     cgaatcttac cggaccctca tcagccagtt ccacacaaat aaacacacga atcatgaccg       780
     agagggacat tgaggaaaaa ataaaaacaa tcttagagac aaatctcagt agactagtaa       840
     aggaaatact taatccaaat aaagattttt ccaaatatac agaccaaaca attaaaagag       900
     aattaacgca caatcttagt gagttagata aattaccaga cattgttcgg acacttagag       960
     acttttcagg aaacaaaagt gaatattcat catggaggaa aagtgtcgag agggtgttaa      1020
     aaatctatga aaacagaata ggttcaccaa aatattatgg aattctttta gcaatccgta      1080
     acaaaattac tggtcaagcg gacgcagtat tagaatcata taataccccc ttagattgga      1140
     cagctatttc aaaatgccta acagcgcatt tcgccgacaa gcgcgactta aagaccttag      1200
     aatatcaact atatgctctt aaccaaggta acaatactat agatgaatat tatcaggcag      1260
     tctatcaaca attatcacta attctgaacc aaattggcag cttagatgcc tcacaagaaa      1320
     ctatacaatc tctgacagcc atgtataggg aaaaagcctt agacactttt gtcagaggac      1380
     ttaatggaaa cctggcacaa ttgctggcca ttaaagaacc acatgactta ggacacgctc      1440
     tacatttatg cagtctgcta gagaatcaaa atgctaggaa taaccagaca ccaaaaactc      1500
     cgtatttagg gagggcaccc atgctaccac ctaaacctca acaaccatat cggatggtag      1560
     ccgtcaaaca aaatttccat ccgcatctct accataaccc aaaccaatcc ggaaaacccc      1620
     taattactca aactaaccaa ttcaaatctt atagtcaacc ttatacaaac caatccggtg      1680
     tagtagcgtc ctataacata ccaaaacctc cgccacgacc acaaccgaaa ccggtaccta      1740
     tggacgtaga tcagtcagtt cgatcacgtc atataaatta tatgaacaaa ccagcaaata      1800
     atgattatgc agggaaaaga cctctcagca ccgctaatgc cccaaataat aataagatgc      1860
     caagacagtt ccatattcaa ccagagacag gaagtaacgc gcagcaaaat tcagatgaag      1920
     cttcatcaag ttcagaacaa gagtattatc agttggcaga agaaaataac gttaacgaac      1980
     ttcaggagga atatgtatgg caaagcgata acgaacaaca agaatacata gatatgtcag      2040
     aactttattt tttagaataa atcgttcctc actaccttac tttaaagtaa ccacggggaa      2100
     cggaaaaatt ctaaaattct taatcgacac gggctctaat caaaattata ttcaaaatca      2160
     attagtacca aatccaaagc caaatgagaa cactttttca gttagttcag tcggtggtaa      2220
     caataaaata acacaacacg caatacttaa gctcgctaat atttcggata cacccatgaa      2280
     attcttttta ctagacaccc tgaaaacctt tcatggtatc ttgggcaatg acacaatgaa      2340
     aagactagga gcaataatag atgtaaaaaa tgatatatta attctcggaa ataaacgcaa      2400
     aattaaaatt catcaactag cgacacaagc agtaaataca attggaccgc aagtcagcca      2460
     tatgaccgag tcacaaaaat caataataaa actcctcgta caaagccaca aaatcctctt      2520
     cgcagatccc gattcaaagt tagcatacac aactaaagta gtaggtgaga tcagaacttc      2580
     atcagattct ccagtttacg gaaaacatta cccataccca atatcactca aacaagaggt      2640
     agaaaaacaa ataactgaga tgctaagaga tggtattata agaccttcaa gatcaccata      2700
     taatgcacca gtctgggtag ttccgaaaaa gtccggccag tccgaagaaa aaaagtacag      2760
     attagtaatt gattatagga aacttaatga agttactatc tcagatcggt atcccatacc      2820
     cgaaattgga gaaattattg cgcagctcgg ggacaacaaa tatttttcgg tattagatct      2880
     caagagcggt tttcatcaaa taccactgaa agatacagac atagaaaaaa cagcattcgc      2940
     ggtaaatggc ggaaaatatg aatttacgag actcccattc ggtttgaaaa attccccttc      3000
     catttttcaa agagcgttag acgacatatt gagagaatac atagggaaaa tttgctatgt      3060
     atacgttgat gatattatag tctttagcaa aaacgaagtg gagcacggca aaaacttgga      3120
     aagagtattt tcaacgctac aaaacgcaaa tatgagggtt caaatagaga aatgccattt      3180
     ttttaaaaac gaagtagact tcttggggta cacaatatca gaaaatggag taaaaaccaa      3240
     catagataaa ataaaagcga ttacaaaatt tccagtccca aaaacattaa aagatctccg      3300
     ttcctttttg ggcatgacag gttattatag gcggttcata aaagattacg ccaaaatagc      3360
     aaaaccccta accattcttc taagaggcga agaaggccgg atatctaaga ccaagtcaag      3420
     cagaactgct atcaacttga gcaaagatgc gattacagca ttcgagaaac ttaaaaatac      3480
     tctcgtctcc agggaggtta cccttgccta tccagatttc ggaaaagaat ttcaattgac      3540
     tactgacgct tcaagttacg caataggcgc agtattggaa caaaatcata ggccaataac      3600
     gttcatttca cgcaccctgt caaagactga agagaactac gcaactaacg aaagagagat      3660
     gctcgcgatc gtttgggcgc tccaaagttt aagacattat ctttacgggt attcaaaagt      3720
     ggtaatatac acggatcacc aacccttgag tttttcgaat agcgtaaata accataacgc      3780
     taagcttaaa cgctggagag acctcattgg cgagtataac cacgagatca ggtacaagcc      3840
     cggagtagct aatgtggtag cggacgcgtt gtcccgggcc cccgcagaaa ttaattcaat      3900
     cagctcctca gcatcagcca atagcgacga aagctcgtca cacaacctca tattttcagt      3960
     agaagctcca attaacgtat ttaaaaacca attattatta ctgactgccg atacagawtc      4020
     ctatagcttc gaaatgccat tcccaacata ccacagacac ataattaaac aaaaatctta      4080
     cacggaagaa aaacttattg caattttaac tagtaaactt gatccgaagc ttataaacgg      4140
     aatcattaca tccgaagagg taatgggaaa aattcaaaac atttacccta cctattttaa      4200
     atcatacaag gtaaggttta ctcaaaacga aatagacgac gtaacttcgg agtcccaaca      4260
     aaacgaaata attatcctcg aacataaacg agcccataga gatgcaaaag agaacaaatt      4320
     acaaattttg aagaattatt tctttccaca acttaccaag aaaatccaag caatagttca      4380
     agcctgtcaa acttgtaaag aatcaaaata cgatagacac cccccaaaag gagaaatcca      4440
     accgacccct attcctaatt acccaggaga aatagttcac atagatattt atattaccga      4500
     aaaacataga gtcttaacgg gaattgacaa gttttcaaaa tatgttcaag taaaaatttt      4560
     agagtcaaga gcatctgaag atattaaaaa tccgttgagg gaaatgttaa ttgctttcgg      4620
     tatgccgaaa tggataataa tggacaacga acgatcattt ggctcagcag caataaagtt      4680
     tatgttagaa gatgaactca aaatatcatt acacaccacc gcaccgtacg catcgacaag      4740
     taacggacaa atagaaaggt ttcattcaac cctatctgaa atcatgcggt gtctcaaaaa      4800
     agacaacggg agcatatcat ttgaagattt aatctttaaa gcagttcaag aatataataa      4860
     atcgatacat tctgtaacaa aagaaagacc catagacata tttttcagaa gcacaatctc      4920
     tagttcaaca gaagacatag aaaagaaacg agaagaaata aaaaagaaaa ttaaaaataa      4980
     acaaacagcc gacctcgaat accataatca aggaaaaata ttaccaaaac tttttaagcc      5040
     aggcgaaact gtacatgtaa aaatagataa aagattagga actaaactta cacctagata      5100
     caaaaccgag aaagtagcgg aaaatagaac gaccaccatt aaaacacaaa ccggaaaaat      5160
     catacataaa aataatataa gaacataatt tttcagatta tttttaccaa catgcttggg      5220
     aataactaca gtcctcgact attccaattc acaaatcatc tcactcgaaa ccggattagc      5280
     ggctaaacaa gacggaacaa ttaaaatcat ccacatcttt aacctacaaa gctatgaaga      5340
     aactctggcg aagttagaag aatcatttca ttcactcacc ccatctcatc cattacaccc      5400
     atatctttcc tatgaactaa aacaaatcca aacggattta cgcatactcc aaactcaaaa      5460
     aagacaaaaa agggcaatag aagcaatagg tactgcatgg aaatggcaga tcaccacgac      5520
     tatcagatct tagaagacaa gataaatgag cagctagaaa acaacaatag acaagtagta      5580
     attaacagat taattaatca aaaaataaac caacttacta acgctactaa tgcaatgttg      5640
     aaaattaccc agagctcgga agaaatcata aatcagaaag caaatatttt aaagtataaa      5700
     attcaattaa taaaagaaga aataattaac ataatatacg caattacatg ggccaaatct      5760
     aatacaataa attcatttgt acttacaaac acagaaacca aaatagtgga agaaattttt      5820
     aaaaaagaaa ataacttatt ttttaacata gaagaattat tggaatttgc tcgaatcaag      5880
     ttagccacaa atggcaacga ccttatttac attattagct taccaaccat tgaatcagat      5940
     aattgtagaa ctttaaaaat taaagcaata aaaaaaagcc caaataatca atgatataaa      6000
     atatgaaaat tttttagaat gtaagagaca attattggca ataattaaac cttgtgaatc      6060
     ctataatgat aagacaattt gtaattcaga aaatttgtta gacttaagca atgatacttg      6120
     cgtaaacgct ctattaaacc ttcgagaacc agaatgtaag atgatcaaca atcaacatat      6180
     accggatttc gaagaaatac taccaggcac catcctgcta aacaacttca atggaccagt      6240
     ctcactagat gaaaaacttc tacaactgca aggctctttc ataatacaat atcgtaattc      6300
     gacggtaaca attggtgaaa ccatcttcaa gtcaaatgaa atcaacgtag tcgaaccaga      6360
     acctccgtta ttccaactat tgggcgaaaa gactaagtta gaggaagttc tctcactaca      6420
     aatggtcaag gaactcaaca ttaacaacac aaaagcgctg gaaaaattaa gaagcaaggc      6480
     aaccatagaa tcttccgtta gctacggatc cgccatcatc ctactactac ttataatagg      6540
     atcaatcacg gaactcctac gaagacgtag gtcaacggaa aggacaccag tttctgtgcc      6600
     agaaacgcaa gaaaagccca cgcactccgg acctgtactc tactacgttg cgaccgagga      6660
     cagtcgcgtt taaggaggga ag                                               6682
//
ID   Gypsy-19_DEl-LTR repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   20-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-507
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 456-456 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 507 BP; 200 A; 103 C; 89 G; 115 T; 0 other;
     agttaacacc caaaataata caatttctca gacagaggaa atgagtaagc attgattgca        60
     caacaaacag caaagcaatg ccctcaataa tagaatttcc caaaccgaag aagagagcat       120
     taattgcaca actaacagca aagcaatgct ctcaataaag ttctaacgaa cttagcttgc       180
     accttttggt cagcgatcgt gggaatgcag aatagccaat ttccaaagtt gatcgaactc       240
     aacttagtgc atacaacaaa aactataatt aaaatgcact ggccaattac aattaagttt       300
     ggccaacggc gacggcgacc aagagcagca accaataata tgaaagaacg tcagcagaaa       360
     catcaacagc ggcagagacg gcggcagcga tggagcgacg cgtagctata aaaacaattg       420
     tttaacctaa gtaagttagt tcttaatcca actcaataaa ggaaagtttg atttttttat       480
     ataaaaatca taaccaatct tttaact                                           507
//
ID   Gypsy-19_DMel-I repbase;    DNA;    INV; 5935 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5935
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1051-1051 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1413..1901,1905..2207)
FT                 /product="Gypsy-19_DMel-I_1p"
FT                 /translation="DSLDERLVALESVDPDSSTQRSEARDKSTDETQKQEH
FT                 EKEEPQWGGNNPPPFPMPFAMPGMNGWPDFGIPYPMMGNPFRAGNFNQGDS
FT                 TGYQRPYRNYQNRNSRWNQNQTNRDRQWNSYNSNNFNNNNYNNGYNNNGYR
FT                 SNGRGQLXIEPPTNTEGSGXSRMSQFNPITRTILKDRLIQAALQIKTTVEP
FT                 RSGVSCITFHSQPRTTHRIFMNKEKSFDIALFVSKDDAGKINKIINRHRIH
FT                 LFIYSTRVSTTTIYKETKRHNSH"
FT   CDS           join(2391..2552,2556..2846,2746..2958,2906..3625,
FT                 3615..4400,4420..4668,4672..5277,5150..5881)
FT                 /product="Gypsy-19_DMel-I_2p"
FT                 /translation="MKQKIQSEAYRPSELYTIGAESKRVISXPVRLKDGDF
FT                 LINRTILKEDMEISKGIRAVSGQSLIEVINYAESDQELFLEEPINVVEFKS
FT                 TXHFELNIIEEERNGNSSIPFDKIRTDHLNKEELGELRRICRKYPGIFHKE
FT                 GDKLSFTNAVKHTKKNSENFAEFVGSIREYSTKKETSCLLQTQSNIKIRTK
FT                 DAFPFMPSLIDMRLRKDKGEKTAGETVRPKDNGKTRVRRQLEKLLDQKIIR
FT                 HSHSPWSAPVWLVPKKKDASGERKWRMVVDYRKLNEKVIKDGYPLPIINDV
FT                 LENLGRAKYFSTLDLASGYHQIEVQEEDIPKTAFSAEGGHFEYVRMPFGLN
FT                 NAPATLGKCCLIYMXDIMVFPTSLQEHITNLGKVFKKLTEANFKLQLDKTE
FT                 FLRTEVEYLGHVVTPQGIKPNPGKIESIKKFTVPKTRKQIKSFLGLLGYYR
FT                 KFIKDFAAITKPLTKSTRNQLKGKKAVQIXEEYTEAFEVCKTLLCNDPILQ
FT                 FPDFEKTFILTTDXSNYAIGAVLSQGNLGTDRPIAYASRTLSTSEINYAAI
FT                 EKEMLAIIWSIRLFRHYLFGTKXKIVTDHXPLPXPMSIREPGSKLVRWRLQ
FT                 MLEYDYEIVYKKGSLNVMADALSRIQPELNVLENASEVATNGETMHSAGED
FT                 LQLGFPISEKPLNEYNIQVVIENGRTANVEKQVPFRNKMRIAWTENNFDDE
FT                 TILKHYRQILEICMGSNYSSQGKYKTLWPVRNTQKDNCDQELEFSSNLFKI
FT                 LVGSTNLSCIRFVVRSLKNKLQRWRKLGFKEGMPKQRRARGLINGLGSVVK
FT                 AITGNDANDAEKLEEEIRKMREEEEXLRESINSQEEAGSKVNFMFKNLTKY
FT                 INEEQSRVNTFINNYNNGISKSFIEEDRRIYRLEYIDRISLTIDILALNLN
FT                 DVAESLLLAKLGVISRFLFDKKETDRCVHELESQGIQLLSDEHMYEFLELS
FT                 TIINNTDILFLIKLPLFKERNIFIPKINTTSHEQHRICDNSKLCGDSWERN
FT                 TLLLNCRYLKKEIFSFRRLIPLPMNNTEFVITPNYVGIHGNEIHYYKEKCQ
FT                 LIRNIYICKNDKSISQINSKCITRLLRGKEAECETKDVGLVATIFEPEAGY
FT                 IAIFNGGNVKLQTDCGVDKTLNGSALIKFTHCKAMVNNVQYEAVEGLGTAE
FT                 LKLDIPRIETIKRNRTTQELGIHELRMEDLETKIQISRIQWGTTIHTTTTY
FT                 SMLGILLIVVFVVAWFPKNTTIFTPETKPQATFTPTIASPATV"
XX
SQ   Sequence 5935 BP; 2103 A; 1048 C; 1422 G; 1281 T; 81 other;
     ggcgcagtcg gtagttccag gtctaaggac gattcaacag gattcgtgac gaccaggaca        60
     tgaggatagt actaataata tcgatttaag gaaaaacagt gagtagagtg aagtgtgtaa       120
     aatggaggcg gaaataataa accgcgagtt aacaattaga aaaaaaaaac aaaaaaagca       180
     agtgcaaaga atatacaaaa aaaaaaamca taataataat aaataaagaa caaatataaa       240
     taataataaw aacaaaggaa aaacaaagag gaaaaagccg aaataagcca aatcaaaaga       300
     ataatgctac ataagtaaaa tacgaaaatc aaagaactga ccttcgtgtg tgaacagaag       360
     aagtagaggc aaggccgaag gttggttaaa agaaaagtat taattcaaga agtgcaagaa       420
     aatgggttcg aacaagcaaa cgatcggagg tagatgtcgt ggctcgaagt cgcagagaac       480
     ggctmgagca aacgaccgtc agagaacggt ggcggttgct ggaagttcaa tgcgactagg       540
     gggctcgccg gtcggtggca gtagamggtt ggtgcgcagc gggaagtgcc aacaagttcg       600
     agtgtaggaa aaaggggaat ggtcgagccg aacggctcka ttgccgatta gaaattagaa       660
     aaattcagtt cgttcgcatg tattaggcag ggcactgtat tgggcggsgc actgtacsca       720
     caggccgcct agcgtwsgga tgkmtgcgkc gcacwgccga agagctagct tcakcatgca       780
     gggtgttagg gtaaaggtag acgataccat cgcackgtms gcaagttagg tgtaagccsw       840
     gcaattccam gcatgtwtta waaamwaaat mwmtakaata agtamacwgm ttaaacaaaa       900
     maamasamaw gcamgcggga twattawgcc gmacccwack gaskgacggg acgttagaat       960
     gamsaamttt amkcgtwctt aataatagam ctkgtggaaa ttattccgak atatgaaggt      1020
     gaaggggsaa agctagatgk ttttatagsa gcagttgagc aggtgttagg mctgattwgg      1080
     ggggaagaga gatcgaatat aggagttata gcgctccgag cagtccggag caagatagta      1140
     ggagcagcgg ataaagtcct agatttggac gagkcasagt taaawtggga tmaaattaaw      1200
     agaatattga cmtcccacct kaaagacaaa agatcagagc aggacctkat aatggaattg      1260
     acccatatca aagaaaagaa gctgaaccct ttacactagg gttatgactc tgaaggaskc      1320
     cttggggcgc tgaacgcctt tatttcgtgc ttaaaggggc cgagagtaac cataaggaac      1380
     ctgggggtcc tgaatatagc caaggcttat gagatagctt ggacgaaagg ttagttgcct      1440
     tggaaagcgt cgacccagat tcgagtacgc agaggtcgga ggcgcgagac aaaagcactg      1500
     acgaaaccca gaaacaggag catgagaagg aggagcccca gtggggagga aataatcctc      1560
     ctccgtttcc gatgccgttt gccatgccgg gtatgaatgg atggccagat ttcggaattc      1620
     catacccgat gatgggcaac ccattcaggg caggtaattt caatcaggga gactctacag      1680
     gctatcaaag accatatcgc aattatcaga acaggaactc cagatggaat cagaatcaaa      1740
     cgaaccgaga taggcagtgg aacagttata atagtaacaa ttttaacaac aacaattata      1800
     ataacgggta taacaacaac ggttatagaa gcaatggcag gggacagcta scgatcgaac      1860
     caccaacaaa cacagaaggc agcggccwgt ccaggatgtc gtgacaattc aacccgataa      1920
     ctcgaacaat tctaaaggat cgtttaattc aagcggcact gcagataaaa acgacagtag      1980
     aacctcggtc aggggtcagc tgcataacat tccacagtca gccgcgaaca acccacagga      2040
     tatttatgaa caaggaaaag tcattcgaca ttgccctatt tgttagtaaa gatgacgccg      2100
     ggaagatcaa taaaattatt aatcgacaca ggatccacct tttcatttat tcgaccagag      2160
     ttagtacaac cacaatttat aaggaaacta aaagacacaa tagccattaa aaccatcaca      2220
     cagtcgcatg aggttcagag ggaagcattt ataccaatgt tcgcagagtt aggaggagtt      2280
     ggtaaaataa gaatgcttct cttttaattt catcagttct tcgaggggtt gatcgaagga      2340
     tgtgctgcag cagttgaagt atacagaacg gatggtttga gttagcaaac atgaaacaga      2400
     agattcagtc tgaggcctac agaccatcag aattgtatac aataggagcc gaatcgaaaa      2460
     gagttatatc tsttccggtg cggctaaaag atggggattt cctaataaac agaaccatat      2520
     taaaagaaga catggagatt tcaaaaggta tctaaagggc agtgtcagga caaagcctga      2580
     tagaggtgat taactacgcg gagtcagacc aggagttatt tttagaggaa ccaataaatg      2640
     tcgttgaatt taagtccaca maacattttg aactaaacat tatagaagag gaaaggaacg      2700
     gtaatagtag cattccgttt gacaagatca gaacagacca tttgaacaaa gaagaactcg      2760
     gagaacttcg cagaatttgt aggaagtatc cgggaatatt ccacaaagaa ggagacaagt      2820
     tgtcttttac aaacgcagtc aaacattaaa attagaacaa aagatgcatt cccatttatg      2880
     ccaagcctta tagatatgcg tttaaggaaa gacaagggtg agaagacagc tggagaaact      2940
     gttagaccaa aagataatta gacatagcca ttcgccgtgg agtgctccgg tctggctggt      3000
     gcctaaaaag aaggatgcct caggagaaag aaaatggcga atggtggtgg attatagaaa      3060
     attgaatgag aaggtgataa aggatggata cccactacct ataataaacg atgtattaga      3120
     aaacctaggt agagcgaagt acttctcgac gttagactta gcaagtggtt atcatcagat      3180
     tgaggttcag gaggaggaca ttccgaaaac tgctttctcc gcagagggag gtcatttcga      3240
     gtatgtccgg atgccgttcg gcttgaacaa cgctcccgca accttgggca aatgttgtct      3300
     catttatatg gasgacatca tggtgttccc aacgtccttg caggaacata ttacgaattt      3360
     gggaaaagtc tttaaaaaac tcacggaagc taattttaaa ctgcagttgg ataagacgga      3420
     atttctgagg acagaggtgg aatacttagg acatgtagtg accccacaag gaatcaaacc      3480
     gaatccggga aaaattgaat cgattaagaa attcaccgtc ccgaagacca ggaagcagat      3540
     aaaatccttc ctagggttat taggttatta cagaaagttc attaaagatt tcgcagcaat      3600
     aacaaagccg ctgacgaaat caacttaaag ggaagaaggc agtacaaata gamgaggaat      3660
     acacagaagc atttgaagtg tgcaaaaccc tcttatgcaa tgacccgatc ttacaattcc      3720
     ccgacttcga aaaaacattc atcctgacca cggatkcaag caattatgcc attggggcgg      3780
     tcctatcaca gggaaacttg ggaacggaca gaccaatagc atacgcaagt agaaccctgt      3840
     caacatcmga aataaactat gctgcgatag agaaagaaat gcttgccatt atttggtcaa      3900
     taaggctttt cagacactac ttattcggca cgaagttsaa aatagtgaca gatcatakgc      3960
     cattaccctg sccaatgagc attagggaac ccggctctaa acttgtaaga tggagactcc      4020
     agatgttgga atatgactat gaaatagtat acaagaaggg ctccttgaac gtgatggcgg      4080
     acgcactgag cagaatccaa ccagagctca acgtattgga aaacgcctcg gaagtggcaa      4140
     caaacgggga gacgatgcat tccgcggggg aagacttaca gttgggattt ccaatttccg      4200
     aaaaaccact gaacgaatat aacattcagg tggttataga gaacgggaga acggctaatg      4260
     tagagaagca agttccattt aggaacaaaa tgcggatagc ttggacagaa aataactttg      4320
     acgacgagac aattttaaaa cattatcgac aaattttgga gatatgcatg gggagtaact      4380
     attccagcca aggaaagtat taacatgtga aggtgatgaa aaactttatg gcctgttcgg      4440
     aatacccaaa aagataattg cgaccaagaa ctcgagttct cgtcgaacct ctttaagatt      4500
     cttgtaggca gtacgaactt gagctgcata agatttgtag ttagatcact gaaaaataaa      4560
     ttacaacgat ggcggaaact aggttttaaa gaaggaatgc ccaagcagag aagagcgaga      4620
     gggttgatca atggattggg atcggtagtt aaagcgataa cagggaatta agacgcaaac      4680
     gacgcggaaa agttggagga ggagataagg aagatgagag aggaagagga aagsctaaga      4740
     gagagcataa actcacaaga ggaagcaggc agcaaggtca atttcatgtt taagaactta      4800
     acgaaataca taaacgaaga gcagagtagg gtaaacacat ttattaataa ctataataat      4860
     ggcataagta agtcatttat agaagaagac aggaggattt ataggttaga atatatcgac      4920
     agaatttcgc ttactataga tatattggcc ttgaacctga atgacgttgc cgagagcctg      4980
     ttgttggcta agttaggagt aatttccaga ttcctattcg acaagaaaga aacggacagg      5040
     tgtgtccacg aattagagag tcaagggata caattattat ccgacgaaca tatgtacgaa      5100
     tttttagaat taagcactat cattaataat acagacatac tatttttaat taaattgccg      5160
     ttatttaaag aaagaaatat tttcattccg aagattaata ccacttccca tgaacaacac      5220
     agaatttgtg ataactccaa attatgtggg gattcatggg aacgaaatac actactataa      5280
     agaaaaatgt cagttaataa ggaacattta tatatgtaaa aacgataaaa gtataagtca      5340
     aatcaattct aaatgtatca caagactgtt aagaggaaag gaagcggaat gcgaaacgaa      5400
     ggatgtcgga ttggtcgcaa cgatcttcga accggaggcc ggctacatcg caattttcaa      5460
     tggaggaaat gtcaagctac agacggattg cggagtcgac aaaacattga atggatcagc      5520
     ccttataaaa ttcacccatt gcaaggcaat ggtaaacaac gtgcagtacg aagcggtaga      5580
     ggggcttggc acagcagagt tgaagttgga catwcctcgg atagagacga ttaagagaaa      5640
     caggacaacc caggagctgg gaatacacga gctgaggatg gaggatctgg aaacgaaaat      5700
     acagatcagc aggatacagt ggggaaccac gatccataca acaacaactt actcgatgct      5760
     cggtatacta ctgatagtag tattcgtcgt ggcctggttc ccaaagaata caacaatttt      5820
     cacaccagag actaaaccac aggccacctt cacacccacc atcgcttcac ctgctacggt      5880
     gtagcaacta ttccccgcta tggtcggcag tctgaggggg gaggagctac cgccc           5935
//
ID   Gypsy-19_DMel-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-438
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1030-1030 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 438 BP; 147 A; 117 C; 76 G; 98 T; 0 other;
     agcattcacc ctcggcggtc ccccaccaaa gccgcctcga caaccagagg tctaagaggg        60
     caccaagaaa tactttgttg tactttgttg cggctcactt aaaacgctga gacatagtat       120
     caactaaaca tccgaaatgc tgcatcggcg accacttgaa acgctgagtc ttggatcgat       180
     taccattgga aatgctgaat cgatccaaac aacgggccac ttgacaacac agaaccgcat       240
     ccgctccact tctacttttc ggtcaatcag catattagaa taagcataaa tgtaccaaac       300
     caaaactata aaaatgagga gaaagaaata aaacattcat tcagaatttc aaactcaact       360
     ccaacggacg tttctcttgg gatcaatacc accaaatctt cactactcaa actcccggac       420
     ctacgttggg agataact                                                     438
//
ID   Gypsy-19_DMo-I repbase;    DNA;    INV; 6245 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6245
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2958-2958 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. 4-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           668..1738
FT                 /product="Gypsy-19_DMo-I_1p"
FT                 /translation="MANNLTADIIAQLIATHTRALQDQISELKSQLTLSST
FT                 NEQEFRATVINEAIRCDESFDIIKSLPEFSGSHNAYVSWREAACGAMRMYK
FT                 EGSRRYVGALTILRNKVTGRANDVLTNHGTVLNFEAILARLDFAYSDKRPM
FT                 HILEQELSVLRQGNLSVLDYYNLVNKKLTQIINKTIMTYGDKANLINELNT
FT                 KNRDNALRVFITGLNGSLSNILFSLNPENLPNALAKAQELEANHQRANFAY
FT                 NHSFNSQQSYANKTEQTKQNKSDQPYKKYDNRLRFNQSSQNQKHPNAQPPQ
FT                 EPMDVDRSIQIQNPSFQQNPNLEQANKRGFSSQTIQQPKKVMRVNNIQEDH
FT                 FLEEQGETSHSSIE"
FT   CDS           join(1750..2364,2346..4760)
FT                 /product="Gypsy-19_DMo-I_2p"
FT                 /translation="MNKQLKVLIDTGATCCYIKKGIYDNPEELAIKKRVKT
FT                 VNGYSIITHFHNINIFGKRYRFYEISNLEADLLIGYNLLKDINAIIDLSKG
FT                 SLQYNNKTEKINLVNSNLDKEHCAIPYLNYETLKSDSLFNVSDIESSSSSD
FT                 SDCPKLNFKRNKHKMKKAKKSRQQELSVSSTSTSICKVNHSIDEMVNLANL
FT                 EEQIIQEIKTKHSQNNQTLPKLNSNTIPDRYPMPDPSVILSNLGKAKFFST
FT                 IDLESGFHQILMKNADIEKTAFSINNGKYEFLRLPFGLANAPSIFQRAMDN
FT                 ILRDKIGKTCHIYIDDIIVFSENIEQHFNDLREIIEILFKANMKISLEKSK
FT                 FFKKEIEFLGYMVSHNTIATDPKKIETILKYPPPNNLRELRSFLGLTNYYR
FT                 KFVQNYANIAKPLTKLLQGHNGMISKHMSKKTKISLNDEAHSAFETLKSHL
FT                 ATKVELTQPDYSKKFVLTTDASDIAIGAVLSQENKPITFISKTLNKTEKNY
FT                 ATNERELYAIVWALKNLRNYLYGITNLEIQTDHQPLSFAVSARNPNSKMKR
FT                 WHAFIEEFSPTILYKPGSTNVVADALSRVVINHISTENNQMSDNKPSSDNE
FT                 SSSDIETIHSADSSHDYILEETKKPLNQFKQQLLISKNSFTIHEKCNPFNK
FT                 TRHIIEYDTLDNLITILKEFLQPNITTGIHCSLEDLYEIQNKLKITFTNKF
FT                 LFTRKFVVDIENKNDQEIIIEETHARAHRGFDENLKEILKYYYWPTLYKTL
FT                 KQYIRHCEICNKNKYDRNPKQILISKAPIPKTEGEQLHIDIFYAQKLSFIT
FT                 CIDAYSKFLVIKEINNKSDMANKVLELIQIFPFAKSIMLDNEPSFSSAQFK
FT                 STMSRSGITIYYTDPRHSLSNGQVERVHSTLIEISRCIQEEFNIINYSEVI
FT                 YRAVKEYNNTIQSTTQQKPCEILFNKINHSELPEKLESAQSKMLEYHNKKR
FT                 ISKNYQVGQVIYEKKHGERNKLQPKYKKQVVKEDLGNTVKINNRDRIIHKD
FT                 NIRS"
FT   CDS           4791..6209
FT                 /product="Gypsy-19_DMo-I_3p"
FT                 /translation="MTILYVLITLLPFCRPDIINYSNDDYVLLEDVDNFLL
FT                 YETFGEVFHVTNLSFYNDIFEKELIFFSNRSNSTDWEITMELNLIKTLLSQ
FT                 LTPHRVSKRSINELGTIFKWITGTPDHNDMLTIQNKINELIENNNIQNQIN
FT                 SAIFKEVTKITNLLENIKFNQEILLKKYRLKLLSLDLXNLLDTITFSKANI
FT                 INPKILNKQDMTNIFNHEAFNITLIDLLDVSSFSIISYQGLIIVFIKYPTI
FT                 NHNCKLYHAKAISQSDGKLFIDDKIAKCKNTFYLIKNFKAEIYNTFAQIVY
FT                 EKNCFIDLVNKQFTSCTKISEKNKPIEVITDGAILISGKNCVNNTWLTGTY
FT                 LITFKTIVTINNITYTNEKEKLLNYVKHNKFTNYLITEYKTSNDTELRLEN
FT                 TNTLSKIVIELENNHTKITFIIFLIIFTFIMIKLLKFCSRNNFNPITFLFS
FT                 NPSNNQNIQNSDILNAINNQIEFLMRNR"
XX
SQ   Sequence 6245 BP; 2585 A; 1145 C; 822 G; 1691 T; 2 other;
     ggcgcccaac gtggggccta cgttaaataa gaaaacacat tgaaagaata taaaaacctt        60
     ttaatgtaat cgtacgccgc cgaaatttta aacgtgaact aaaaagtgtt aaagaaatta       120
     aacccaacag aaacaaaagg tttctggaac tcaaccaaaa agtgcattaa aaagttttga       180
     taaaagaaca aaacaattgt gcttacaaaa aaaccataac gttaacaaaa gttaaagaat       240
     cgattattaa tatatagaat attcaatgaa caaggtgtaa aagtaccgaa ccaaaaacta       300
     aaagtaaaca acaaaaatct gtggccaaac caaaatctaa aagtaaacaa caaaaaactg       360
     tggccaaacc aaaaactaaa agtaaacaac aaaaatctgc gaccaaaaag acgattaaga       420
     aggaaggaag gaaggaagga cgacctaccc aatttgctga aacccccaga aagaagcact       480
     actacgtgag cgatcgtgaa ttttttaaat aagaaatagt attaaaaata ttgattgttt       540
     taaaattgta ttaaaccaac attcatttaa aattgtacta aaccaacatt catttaaaat       600
     tgtactaaac ctggacgagt taattgaaaa tttaggaaaa ttaaaggtga ctacagataa       660
     ttcaaaaatg gctaataatc tgacagcaga tattatagct caactgatag cgactcacac       720
     tagagcactg caagatcaaa tttcagaatt aaaatcccaa ttaacactat catctactaa       780
     tgaacaggag tttagagcaa cagttatcaa tgaagcgatt cgatgcgatg aatcgtttga       840
     tataattaaa tctttacctg agttctcagg aagccataac gcgtatgtaa gctggcgtga       900
     agcagcttgc ggcgctatgc gaatgtataa agaaggcagt agaagatacg taggtgcttt       960
     aacaatactt cgaaacaagg tcactggtag ggcaaacgat gtcctaacca atcatggaac      1020
     cgtacttaac tttgaggcga tacttgctag attagatttt gcatatagtg acaagcgtcc      1080
     gatgcatatt ttggaacaag aattaagcgt attacgacag ggtaacttat cagttcttga      1140
     ctattacaat ctggtcaaca aaaaactaac tcagataata aacaaaacta tcatgacata      1200
     cggcgataaa gctaatttaa ttaacgaatt aaatactaaa aatagggata acgctttgcg      1260
     agttttcatt acaggcctta acggctcatt atccaacatt ttgttttctc ttaacccaga      1320
     aaaccttcca aatgctttag caaaagctca agaactagaa gcgaatcatc aaagagctaa      1380
     tttcgcttat aaccattcct ttaattcgca acaatcatat gcgaataaaa cggaacaaac      1440
     gaagcaaaac aaatctgatc aaccttataa aaaatatgat aaccgcttgc gattcaatca      1500
     aagctcgcaa aatcagaaac atccaaacgc tcaaccccct caagaaccga tggatgtaga      1560
     tagatccatt caaatacaaa acccgtcctt tcaacagaat ccaaatttgg agcaagccaa      1620
     taaaagagga ttctcttcac aaacaattca acaaccgaaa aaggttatgc gcgtaaataa      1680
     tattcaggag gatcattttt tagaggagca aggggagacc tcccattcat ctatagaata      1740
     gataaaaaaa tgaacaaaca attaaaagta ctaatagata caggtgctac atgttgttat      1800
     attaaaaagg gaatatatga taacccagag gagctagcta ttaaaaaaag agtaaaaact      1860
     gtaaacggat acagcatcat aacacacttt cataatataa atatttttgg caaacgttat      1920
     agattttatg aaatcagtaa cctagaagct gatttgttaa tcggctataa tctattaaaa      1980
     gatatcaatg caataattga cctatcaaaa ggttccttgc agtataataa taaaacggaa      2040
     aaaattaatt tagtaaattc aaatctagat aaggagcatt gtgccattcc ttatctaaat      2100
     tatgaaactc tcaaatccga ttcattattc aatgtatctg acatagaatc atcgtcatca      2160
     agtgactctg attgccccaa actaaacttc aagagaaata agcataaaat gaagaaagct      2220
     aaaaagagca ggcaacaaga attgtcggta tcctctacaa gtacttctat atgcaaagta      2280
     aaccattcca ttgatgaaat ggttaacctc gcaaatcttg aagaacaaat cattcaggaa      2340
     attaaaacca aacactccca aaactgaata gcaatacaat ccctgataga tatccgatgc      2400
     cagatccctc ggtaatacta tctaatttag gtaaagcaaa gttcttctca actattgatc      2460
     tagagtctgg ttttcatcag atcttgatga aaaacgcaga cattgaaaaa accgcctttt      2520
     ccattaataa tggaaaatat gaatttcttc gcttgccatt tggacttgcg aacgcaccta      2580
     gcattttcca aagagcaatg gacaatattc tacgcgacaa aattggcaaa acttgccaca      2640
     tctatataga tgacataata gttttttcag aaaatatcga acaacatttc aacgacctac      2700
     gagaaatcat tgaaatatta tttaaagcca atatgaaaat atctctagaa aaatctaaat      2760
     tctttaaaaa agaaatcgaa ttcttaggat atatggtatc tcataacact atcgcaaccg      2820
     accccaaaaa gatagaaact attttgaaat atccccctcc caataacttg agagaattac      2880
     gaagctttct aggtctaact aattattaca gaaaattcgt acaaaactac gcaaatatag      2940
     ccaagccact gacaaaactg ctacaaggac ataatggtat gatttcaaaa cacatgtcga      3000
     aaaaaacaaa aatatctcta aacgacgaag cccattcagc attcgaaact ttaaaatcac      3060
     atttagctac aaaggttgaa ttaacccaac cagactattc caaaaagttc gttcttacta      3120
     cagacgcttc cgacatcgct ataggcgccg tcctttcaca agaaaataaa ccaataacat      3180
     tcatttcaaa aactttaaat aaaacagaga aaaattatgc aacaaacgaa agggaattat      3240
     atgccattgt ctgggcatta aaaaatcttc gtaattactt atatggtatt acaaatctag      3300
     aaattcaaac agaccatcaa ccactttctt tcgcggtttc tgcacgaaat cctaattcaa      3360
     aaatgaaaag atggcacgct ttcattgagg aattttcccc aaccattctc tataaacctg      3420
     ggtcaaccaa tgttgttgct gacgcattat ccagagtagt aataaaccac atctccactg      3480
     aaaacaatca aatgtccgat aacaaaccct cgtctgacaa tgaatcttca tccgatatag      3540
     aaaccataca ttcagccgac agcagtcatg attacatatt agaagaaaca aaaaaaccac      3600
     taaaccaatt taaacagcaa ctactaattt caaaaaatag tttcactatc cacgaaaaat      3660
     gtaacccatt caataaaact agacatatta tagaatatga tacactagac aacctaatca      3720
     caatacttaa agagtttcta cagccaaata taactacagg aatccattgc agtcttgaag      3780
     acttatacga aattcaaaat aagctaaaaa tcacctttac aaataaattt ttatttacca      3840
     gaaaatttgt cgtagatatc gaaaacaaaa acgaccaaga aatcattata gaagaaacac      3900
     atgctcgtgc tcatagaggt ttcgatgaaa atctcaaaga aattcttaaa tattactatt      3960
     ggccaacact atacaaaact ctcaaacaat acatacgaca ttgcgaaatc tgcaataaaa      4020
     ataaatacga cagaaaccca aaacaaatac ttatttccaa agcaccgatt ccaaaaacag      4080
     aaggtgaaca gttgcatata gatatttttt atgctcaaaa actttcattc atcacttgta      4140
     tagatgctta ttccaaattc ctagttatta aagaaatcaa taacaagtct gatatggcta      4200
     acaaggtatt agaattgatc caaatctttc catttgctaa atcaataatg ctagataatg      4260
     aacctagttt ttcatcagca caattcaaat caacaatgtc ccgttcaggc ataactattt      4320
     attatacaga ccccagacac agccttagta acggtcaagt agaaagagtt cactcaacac      4380
     ttattgaaat ttctcgatgc atccaagaag aatttaatat aattaactat tctgaagtca      4440
     tataccgcgc agttaaagaa tataataaca caatacaatc aacaacccag caaaaaccat      4500
     gcgaaattct attcaacaaa ataaatcatt ctgaattacc cgaaaaacta gaatcagctc      4560
     aatccaaaat gctagaatac cataacaaaa aaaggatatc taaaaattat caagtaggtc      4620
     aagtcattta tgaaaaaaaa catggcgaaa gaaataaatt acagccgaaa tataaaaaac      4680
     aagtagtcaa agaagattta ggaaatacag taaaaataaa taatagagac cgcataattc      4740
     ataaagataa tataagatct taataaaaca atttttttta aatttttagc atgaccattt      4800
     tatatgtact aatcacttta ctgcccttct gccgccccga tatcataaac tactccaatg      4860
     acgactacgt tttacttgag gacgttgaca attttttatt atacgaaaca ttcggagaag      4920
     tcttccacgt tactaattta agtttttata atgacatatt tgaaaaagag ctaatatttt      4980
     ttagtaatag aagtaactct actgactggg aaataactat ggaactaaat ttaattaaaa      5040
     cccttctttc tcaacttaca ccccatagag tctctaagcg aagtatcaat gaattaggta      5100
     ctatttttaa atggattaca ggaacaccag accataatga catgttaaca attcaaaata      5160
     aaataaacga actcattgaa aataataata tacaaaatca aattaattct gcaattttta      5220
     aagaagttac taaaataaca aatcttctag aaaatattaa attcaatcaa gaaatattat      5280
     tgaaaaaata tcgattaaaa ctattatcac ttgacctacm aaatctgctc gacactatta      5340
     cattttcaaa agccaacata ataaacccaa aaattttaaa taaacaagac atgacaaaca      5400
     tatttaatca cgaagcattc aatattactc ttattgacct cctagacgta tcstcttttt      5460
     caattatctc ataccaaggt ttaattatag ttttcataaa atatccaacc attaaccata      5520
     attgtaagtt ataccatgct aaagcaattt cccaatcaga tggaaaacta tttatagacg      5580
     ataagatcgc taaatgtaag aacacttttt atcttataaa aaactttaaa gccgaaattt      5640
     ataatacctt tgctcaaatt gtctacgaaa agaactgctt catcgattta gttaacaagc      5700
     aattcacaag ctgcacaaaa atatcagaaa aaaataagcc aatagaagta attacagatg      5760
     gtgcaatttt aatatcagga aaaaattgcg ttaataacac ctggcttaca ggcacttatc      5820
     tcataacttt caaaaccatt gtaaccataa acaatattac ttacacaaac gaaaaagaga      5880
     aactgcttaa ttatgtaaaa cataacaaat ttacaaatta tttaattact gaatataaaa      5940
     cctctaatga caccgaatta cgattagaaa atactaacac tctatcaaaa attgtaatag      6000
     aattagaaaa caaccacaca aaaataacat tcattatatt tttaataatt tttacattca      6060
     ttatgataaa gcttctcaaa ttttgttcaa ggaacaattt caaccctatt acatttttat      6120
     tttcaaaccc gtcaaataat caaaatattc aaaattctga tatactaaat gccataaata      6180
     atcaaatcga atttctaatg agaaatcgtt aagaatcgag gacgatcctt cttaagaaag      6240
     ggggg                                                                  6245
//
ID   Gypsy-19_DMo-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   13-OCT-2020 (Rel. 25.10, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-438
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2965-2965 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. 4-bp TSDs. termini are AG-TT.
XX
SQ   Sequence 438 BP; 153 A; 91 C; 63 G; 131 T; 0 other;
     agttatcacc acgcaactca ggcaaatctt atgacaaatg taaacaactt tcaaataaca        60
     taattccctc tatagtatca cgccactcag cccagacata aaagcttctt gcactattcc       120
     cacagagtaa gcagttttag cctcaatata aacataagat ctccctgcgt tgtttccatg       180
     agcccataga gccggcaacc cagctttgat gtaaacaaat cttaatttca caattccgat       240
     ataaaatcac gtaagccaat cttgggagct tttgagcttt gagctttaat gagggaagct       300
     ttagcataaa cattagctga cttgcagcat aagatcatat cttgtaatca gttcaatttt       360
     ggagtttaat aaaagaacac taagttcact aaatataaaa ttattttttt atcaacttgc       420
     aaagtcaaga agttaatt                                                     438
//
ID   Gypsy-19_DTa-I repbase;    DNA;    INV; 4199 BP.
XX
AC   .
XX
DT   26-MAY-2012 (Rel. 17.08, Created)
DT   26-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4199
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1632-1632 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3083
FT                 /product="Gypsy-19_DTa-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="XAPNAACAAVSPSKTRSPLDXQESPARNGAAASPDAP
FT                 RLQENPVAAPRRLTGKLQRDTAPKQQIGVRPSPAVDNTVHLEPLADAALAR
FT                 ERNPFRREPRRQDHQPSQSNQVNELSANLATVTTEEPLEPWITEFLAAELA
FT                 PFDRMSGVSHIAEHKIVMRDDKPLKQRYFPRNPAMQKIINSQVDELLRDGR
FT                 IEPSRSPHSAPIVLVGKKTGDMRMCVDYRQLNAHSVPDAYPLPRIGHILER
FT                 LRNAKFISTLDLKSGYWQIPMAADSRECTAFTVPGRGLFHWKVMPFGLHSA
FT                 PATFQRALDSVIGPDMEPHAFXYLDDIIVIGTSLEEHVTNLREVLRRLRNA
FT                 NLKLNQAKCKFFQRSIAYLGHVISEAGIHTDPDKIAAVRELQPPTNCKELR
FT                 RCLGIASWYRRFVENFATIVQPLSTLLKKGKKWTWSDAQQQAFEELKTRLT
FT                 EAPVLACPDFNLKFQLQTDASDFGLGAVLTQQVEGTERVIAYASRRLLKAE
FT                 ENYSATEKECLAIVWAIRKMRCYLEGYRFEVITDHLALKWINSIDNPTGRI
FT                 ARWALELQQFQFDISYRRGKQNVVADALSRQPLTTLQQVSETPENCKWITT
FT                 KLKQIEEDPGKFPDYAQENGQLYRNLGDPSKQREHGSWRLCVPSSHRRRIL
FT                 EECHDHPTAGHMGIRKTTTRICQQYYWPRMFRDIARYVRKCPICQRFKVSQ
FT                 LKQAGKMLTRKADGPFSTLCADFIGPLPRSRKGHTMLLVFLDHFTKWVELI
FT                 PLRKATAASLELAFRERILARFGAPKTLICDNGTQFTSRAFKTFCKTAGIQ
FT                 VQHTAPYSPHQNPTERANRTIKTMISQYVNEDQKTWDQLLPEITLAINTSV
FT                 SDSTGFSPAYLVQGREPRLPGSWFDEVTPGTGETPREPRNKADHLKDIFRT
FT                 ARENMEKATREQSRYYNLRRRVWRPTIGTLVWVRTHLLSKASEAFNAKLAP
FT                 KYDGPFKIVRFISPNIVRVQLQGTRKHRNANIGDLKPFQGNXSSDNPEADA
FT                 EDDTSTNPVLPHSRITDITTQ"
XX
SQ   Sequence 4199 BP; 1135 A; 1282 C; 1048 G; 727 T; 7 other;
     acgscgcacc gaacgcggcg tgcgcggcag tttctcccag taagaccaga agcccattgg        60
     acmcgcagga atcaccagcg agaaacggcg cagcagcwtc tcctgatgca ccgcgtcttc       120
     aggaaaaccc tgtggcagcc ccacgacggt tgacaggaaa actccaaagg gacacagccc       180
     ccaagcaaca gataggtgta cgaccatcgc cagccgtgga taacaccgtt caccttgagc       240
     ccttggctga cgccgcctta gcccgggaaa ggaacccttt tcgaagggaa ccaagacgtc       300
     aggaccatca gcccagccag tcgaaccaag tcaatgaact atcggccaac ctagcaaccg       360
     tcaccaccga agaacctctg gaaccctgga tcaccgagtt cttagcagcc gagctggcac       420
     cgtttgaccg catgtccggt gtctcccaca tcgcggaaca caagatcgtc atgagggatg       480
     ataaacctct caagcagagg tacttcccga ggaacccagc catgcaaaag atcatcaact       540
     cgcaagtgga cgaattatta cgcgacggtc gcatcgaacc ttccaggagt ccgcacagcg       600
     cacccatcgt cctcgtcggg aaaaagacag gagatatgcg catgtgcgtg gattatcgtc       660
     agctcaacgc tcactcggtc ccggatgcst atccgttacc ccggatcggc catatcttgg       720
     aacggctccg gaatgcgaag tttatctcaa cattggacct caaaagcggc tactggcaga       780
     tccccatggc tgcagacagc cgtgaatgta ccgctttcac cgtgccaggc cgwggactct       840
     tccactggaa ggtaatgccg ttcggtttac actcagcccc agcgacattc caacgggcac       900
     tcgatagcgt gattggacca gatatggagc cacacgcatt cgsctactta gatgatatta       960
     tagtcatcgg tacatcgttg gaagaacacg ttaccaatct tcgggaagtc ctccgaaggc      1020
     ttcgaaacgc taacctgaag cttaatcagg caaaatgtaa gtttttccaa cgaagtatag      1080
     cgtatctcgg acacgtcatc agtgaagcag ggatacatac cgatccggac aagatcgcgg      1140
     ccgtccggga actacaaccc cccaccaatt gcaaggaact cagacgatgc ctcggaatag      1200
     cgtcttggta ccgtcgtttt gtcgagaact tcgccactat agtgcagcca ctgtcaaccc      1260
     tcctcaagaa gggaaagaaa tggacctgga gcgacgcgca acaacaggcc tttgaggaac      1320
     tgaaaacgag gctcacggaa gctccagtac tggcctgccc ggacttcaac ctcaagtttc      1380
     aactacaaac agacgcgagt gattttggcc ttggggcagt actaactcaa caagtcgaag      1440
     gaaccgaacg agtaatcgcc tacgccagta ggaggttact taaagcagag gagaactact      1500
     ctgccacgga gaaggagtgt ctcgcaatag tttgggcaat caggaagatg aggtgttatc      1560
     tcgaagggta caggtttgag gtcatcacgg atcaccttgc ccttaagtgg ataaactcaa      1620
     tagacaatcc gaccggccgc atcgcccgct gggccttgga actgcagcaa ttccagttcg      1680
     acatttccta cagacgcgga aaacagaacg tcgtagcaga cgcactgtcg cgacaaccgc      1740
     taacaaccct gcaacaggta agcgaaactc cggagaactg caaatggatc accaccaagc      1800
     tcaaacagat agaggaggac ccaggaaaat ttccggacta cgcccaggag aacggtcaac      1860
     tatacaggaa cctaggcgac ccctccaagc aaagagagca cggatcatgg cgactttgcg      1920
     tacctagcag ccatcgacgt aggattttag aagaatgtca cgatcacccc acagccgggc      1980
     acatggggat tcggaagaca accacccgga tctgccaaca gtactattgg cccagaatgt      2040
     tccgcgacat agctcgatat gtccgcaaat gcccgatctg tcaacggttc aaggtgagcc      2100
     aactcaaaca ggcagggaag atgctgaccc ggaaagccga tggaccgttt tcaaccctgt      2160
     gtgccgactt cataggacca ctaccccgat cccgcaaagg acacacgatg ctactggtat      2220
     tcctagacca cttcaccaaa tgggtcgagt tgattcccct gcgcaaggct acggctgcta      2280
     gccttgaatt agcctttcga gaaagaatct tggctagatt cggagcaccg aaaacgttaa      2340
     tttgcgacaa tgggacgcaa tttaccagtc gggccttcaa gaccttctgc aagactgcgg      2400
     gaatccaggt acagcacacg gccccatact cacctcacca aaaccctaca gaacgagcaa      2460
     accggacaat caaaactatg atctcgcagt atgtcaacga ggaccaaaag acatgggatc      2520
     aattgctgcc agaaattact ctggccatca atacaagcgt ctccgacagc accggattta      2580
     gtccggcata tctcgtacag ggtcgggaac cccggttacc cggaagctgg ttcgacgaag      2640
     tcactcccgg aacaggggaa acaccccgag aaccccggaa taaggcagac catctgaagg      2700
     acatctttcg aacggcacgg gagaatatgg aaaaggccac aagggaacag agtcgatact      2760
     acaacctacg tcgacgagtg tggagaccca ccattgggac tttggtatgg gttcggactc      2820
     acctcctctc gaaggcatcc gaagccttta acgccaagtt agccccaaag tatgacggcc      2880
     ccttcaagat agtaaggttc atttccccaa acatcgtcag agtccagctc cagggaacgc      2940
     gtaaacatcg caacgcgaac ataggcgatt taaagccttt ccaagggaac gawagcagcg      3000
     acaacccaga agcagacgcc gaggatgaca cgagtaccaa cccggtactt cctcactccc      3060
     ggatcaccga catcacgact caataagact aagaagacct aacagagcag gacaccctcc      3120
     caccttacca caacagggag attcagtggg gccacttgag cctggtccac cagcgccaac      3180
     gccccaactc tctccacaag gacggggggg gaagtttctt aagacaatcc cagtccttgg      3240
     aagcccgcat agaacccaaa tgcacgttag gagagcaagg aagggatttg gtttcttaac      3300
     tcgaccatca gacccctccc aacggtatat acgctaaccc agttcttttc ttcccagaca      3360
     atccagcgtc accagcggcc attgctcctc gcctacggca gtatcagcaa cttcgggcat      3420
     ccagtggacg ccgagtatcg actcagtgcg gttcagggag gaaccacact catggcctga      3480
     gtcagccagc acgattctgc cctccccaac caggacgctg aaccttggct ccgacgacga      3540
     cgcccatcag aggatcccga ggctagggga accccacatg gagacgggag ccgccgaccc      3600
     aatggtggtc accaccgaac gcctggcccg acttcaagag ctggagtccg cggccatgac      3660
     agactggcct cccatgtggg ccgttagcag ttgggtagac gccgtaggcc tacccgcctt      3720
     cgacccggaa aggctagagg acagcctacg ccagatccaa atcgtcgcgc ccgttccccg      3780
     atctccctgc gaccgaccac cctacgacag cccaccctgc ggcagcccgt ccaggggttc      3840
     gagcaccccg gaaagctttg tagagctgaa tttccgagtg ggttgtgcac aaccctcagc      3900
     ccaacgactc gccgaagcca acgaggcctg ggcgacccaa cagcgctagc agctccgacg      3960
     actcccccgt atccaacggt ccccaggagc ccgaggacag cagcgctagc agctccggcc      4020
     gatcccacga ctctcccgga tcgcaggacg attcacagga gcccgaggac agcagcgcta      4080
     gcagctccgg ccgatcccac gactctcccg gatcgcagga cgactcacag gagcccgagg      4140
     accgcagctc gaatagttct gtcagtgacc acaaccccag caactcccac ggctccgac       4199
//
ID   Gypsy-19_DWil-I repbase;    DNA;    INV; 4320 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DWil_;
KW   Gypsy-19_DWil-LTR; Gypsy-19_DWil-I.
XX
NM   Gypsy-19_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4320
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4320
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
CC   [2]: sequence updated; 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..4319
FT                 /product="Gypsy-19_DWil-I_1p"
FT                 /translation="MTPRTPSQKSNSQKTPKRARNAVAVAPISADKASSVP
FT                 PKIRHQKPKEERERQTEAVPETVIGTVSKDITEAATETALDLINKIETVET
FT                 EQAMANAVEMQSQLQQMMQLLTLKIQVDEQRESQVHMASNCLENIVGEFNG
FT                 TGPRKWFEVFEYNADAFELNEKQMYAQARGKMKGAAKLFLESVSVNNYANL
FT                 KSCLIEEFECELNSAEVHQLLRERKKHKQESIQEYILTMRKIASDGDVEES
FT                 AVLRYIVDNLFLKNEFKVGLYACKTFKELKEAYEIVGKLAKNDPRSVFKTT
FT                 TDVAKTQLPKRQFCFKCGSAEHKIKDCLGETKCFKCNENGHFARSCPLNGG
FT                 NDKKDARGDFKVRNIVNRRRVKKMSVNGVLLDLLVDTGSDVSIFSESTAKQ
FT                 LPNIEVHRNESTLTGLGKKETKPTGAFVADVVVDDLHTTQKFIIVPDEAVE
FT                 CNALIGFDFVEKFIVTYAEGEYTFSKGDAVGDSNKERIAGSYNVFEVASVY
FT                 EAPTIYQKAVRELIESIDEQPKQTQVECPVKLQIIPDATTMKSFHQSPSRL
FT                 SACEAEAVKNQVDEWLTQGIVRKSTSSVASRVVVVQKKDGTPRICIDYRKL
FT                 NSMTLSDRFPVPLIEEVLEKLQAATFFSVLDLENGFFHVPVEESSKYLTAF
FT                 VTKEGLFEFNKTPFGFKNSPAAFIRFVNYVFQNLINDNIMQLYMDDIIVYA
FT                 HSADDCLEKTQKVLQLAAQYKLKIKWEKCSFLQSRINFLGHIVCGGKIWPG
FT                 KEKTDAVNRFGTPKNVRAVQSFLGLTGFFRKFIKDYSQIARPLTNLLRKDV
FT                 KFHIGAAELQSLQKLKELLTSKPLLHLYSRDAPTELHTDASKHGFGAMLLQ
FT                 SFNDKLYPVYFWSKKTTESEAQRHSYILEAKAMYLALRKFRHYLIGIHFKL
FT                 VTDCSAFKQTTRKEDVPREVTSYVLYLQDFTCDIIHKPGKSMQHVDHLSRY
FT                 PQSIYNISTEVSARIKKAQSIDNHIKAVVTILNQQSYENYKIKGGVLYKAI
FT                 DGNDLIVVPKQMENEIIREAHEIGHFATRKTMHAICQQYWIPHLERKVSNF
FT                 IDNCIRCIIHSKKLGKQEGQMHLIDKGDTPLHTLHIDHLGPMDATSKSYKY
FT                 ILAMVDGFAKFVWLFTTKSTGHDEVIKKLTDWSHIFGFPKRIISDRGSAFL
FT                 SNAFAEFVAENKVEHILTTTGVARGNGQIERMNRSILAVISKLSAEESSKW
FT                 YKYVPQVQKALNSQVHASTKFSPFELMFGTKMCAQAGDRVLCLINEEFINN
FT                 FNAERESLRDEAKKNILEAQMTYKRNFDKGRKQDHGYLMGDLVAIKRTQFV
FT                 AGRKLASCFLGPYEVTKIKRNGRYDVRKAAQVEGPNQTSTSSDNMKLWRYV
FT                 VDNDDPESSGTDDDDQEGR"
XX
SQ   Sequence 4320 BP; 1440 A; 838 C; 998 G; 1044 T; 0 other;
     tttgggggct cgtcccattc tgagttggat taggctatta aacattacat ttaggaaccc        60
     gatcgatgtt atactaatac atacgtatat gtacgtgcgt gaaaaggaaa gaaaaaaaaa       120
     agagaccaaa aagtggacaa agttgaacca gcaatataca tacaaagtgt ttaatgacgc       180
     cacgcacacc atctcaaaaa tcgaattcgc agaagacgcc gaaaagggcg cgaaacgcag       240
     tggctgtggc gccaatatca gcagacaaag catcatcagt gccgccaaaa attcggcatc       300
     agaagccgaa agaggaaaga gagagacaga cagaagcagt gcccgaaaca gtgatcggaa       360
     cagtgagcaa agatatcaca gaagcagcga ccgaaacagc gcttgaccta ataaacaaaa       420
     ttgaaacagt ggaaacggaa caagcgatgg ctaacgccgt ggaaatgcaa agtcaattgc       480
     aacagatgat gcaattgctg acgcttaaaa tacaagtcga cgaacagcga gaaagccaag       540
     tccatatggc atcgaattgc cttgaaaaca ttgttggaga atttaatgga actggcccaa       600
     ggaaatggtt tgaagttttc gagtacaatg cagatgcatt tgagcttaac gaaaagcaaa       660
     tgtacgcaca agcgagaggc aagatgaaag gtgctgccaa actgtttttg gaatcagtaa       720
     gtgttaacaa ttatgccaat ttgaaaagtt gtctaatcga agaatttgag tgtgaattaa       780
     atagcgctga agtccaccaa ctgttgagag aacggaaaaa gcataaacag gagtcgattc       840
     aggaatatat tctcactatg agaaagatcg cctctgatgg ggatgtagaa gagtcagctg       900
     ttttgcgata catcgtagac aatctgtttc ttaagaacga attcaaagtt ggtctatatg       960
     catgtaaaac ctttaaggag ctaaaggaag cctatgaaat cgtgggtaaa ctggccaaga      1020
     acgatccaag gagtgttttt aaaaccacaa cggatgtagc aaagacgcag cttcccaaaa      1080
     ggcagttttg ttttaaatgc ggatcagctg aacacaaaat aaaagattgc ttgggcgaaa      1140
     caaaatgttt taagtgcaat gagaacggac attttgctag gagttgccct cttaatggtg      1200
     gaaacgataa aaaggatgct cgtggagatt ttaaagtccg caatatagtt aatcgtcgac      1260
     gagttaaaaa gatgtccgta aatggtgttt tgcttgactt gcttgtagac acaggatcgg      1320
     atgtgtcaat cttctcggaa agcactgcga aacagttgcc aaacatcgaa gtgcatagga      1380
     acgaatctac gttgactggt ctgggcaaaa aagaaacaaa accgacaggc gcctttgttg      1440
     ccgatgttgt tgttgacgat ctgcatacaa ctcagaaatt tatcattgtg cctgatgagg      1500
     cagttgagtg caatgcctta attggattcg acttcgttga aaagttcatc gtcacatacg      1560
     ccgaggggga atacacgttt tcgaagggcg atgccgttgg agactcaaat aaggagcgca      1620
     tcgcaggctc atacaacgtc tttgaggtcg ccagtgtata tgaagcacca acaatctatc      1680
     aaaaagcagt tcgcgaatta atagaaagca tagatgagca gccgaaacaa acccaggtgg      1740
     aatgcccagt caaacttcaa attattccgg atgctacaac aatgaagtca tttcaccagt      1800
     cgccatcaag attgtctgcc tgcgaggcag aagcagtcaa aaatcaagta gacgaatggc      1860
     tgacccaagg gatagtacga aaatcaacat cgagtgtggc tagtcgggta gttgttgttc      1920
     aaaagaaaga tggtacacca aggatttgca ttgattatcg aaaactcaac agtatgacct      1980
     tgtctgaccg ctttccggtc ccattgatag aagaagttct agaaaagctt caagcggcca      2040
     cattcttttc agttctggat ttggaaaatg gttttttcca cgtgccggtg gaggagtcca      2100
     gtaagtacct aacagcattt gtaacaaaag agggtctttt cgaattcaat aagacgccgt      2160
     ttggatttaa aaattcacct gccgcattta taagatttgt caattatgtc tttcaaaatt      2220
     taatcaacga taatataatg cagttgtaca tggacgatat aatcgtgtat gcccattccg      2280
     ctgatgactg cttagagaag acacagaagg ttctgcaatt ggctgcacag tataagttga      2340
     aaatcaaatg ggaaaaatgc agtttcttac agtcaagaat taactttctt ggacacatcg      2400
     tttgcggtgg aaagatttgg ccaggcaaag aaaaaacgga tgccgtcaat cgatttggaa      2460
     cgcccaaaaa tgttagagca gttcagtctt ttcttggact taccggattt ttccgaaaat      2520
     tcattaaaga ctactctcaa atcgcaagac cattaacaaa tttacttcga aaggatgtaa      2580
     aatttcatat aggtgcagct gaactacaat ctttgcagaa gttaaaggag ttgctaacga      2640
     gcaaaccact gttgcatctg tactcgagag atgctcccac cgagttgcac acagacgcat      2700
     caaagcatgg ttttggagcg atgctactcc aaagttttaa cgataaactc tacccggtgt      2760
     atttttggag taaaaaaacg accgaatccg aagctcaacg tcacagctac atattagaag      2820
     ccaaagctat gtacctggct ctacgaaagt tccggcacta cctgattggg attcacttta      2880
     aattagtgac ggactgttca gcgttcaagc agacgacaag gaaggaagac gtaccaagag      2940
     aggtgacatc gtatgtgcta tatttgcaag acttcacctg cgatattatt cacaaaccag      3000
     ggaaaagtat gcagcacgtg gatcatctga gccgctatcc acaatcaatt tataatatat      3060
     caacggaggt atcggcacgc atcaaaaagg cgcaaagtat tgataaccac attaaggctg      3120
     tggtaactat tctcaatcaa cagtcgtacg agaattacaa gatcaaaggc ggagtactgt      3180
     acaaagcaat agatggaaat gatttaatcg tggtgccaaa acagatggag aatgaaataa      3240
     ttcgagaagc gcacgaaatt ggccattttg ctacccgcaa gacaatgcat gcgatttgtc      3300
     agcagtattg gatccctcat ttagagcgta aggtgtctaa ttttattgat aattgtatcc      3360
     gttgtataat tcacagcaaa aaacttggca agcaagaagg tcagatgcat ttgattgaca      3420
     aaggtgacac cccgttgcat actctgcata tcgaccattt ggggccgatg gatgccacgt      3480
     ctaagtcgta caaatatatc cttgccatgg tagacggatt tgcaaaattt gtgtggctct      3540
     ttaccacgaa gtcaacaggc cacgatgaag tcataaaaaa gctgacagat tggtctcaca      3600
     tatttggttt cccaaaacgt attataagtg accgaggttc tgcctttttg tcgaacgcat      3660
     ttgcagaatt tgtcgccgag aataaagtcg aacacatcct tacaaccaca ggagttgctc      3720
     gaggcaacgg gcaaatagaa cgcatgaatc gatccatact ggccgtcata tcgaagctgt      3780
     ctgcagaaga gtcaagcaaa tggtacaaat atgtcccaca ggttcaaaag gctcttaact      3840
     cacaggtcca cgcatctaca aaattttcgc cattcgagct gatgtttgga acgaaaatgt      3900
     gtgcacaagc aggagatcga gtattatgtc taatcaacga agaattcatc aataacttta      3960
     atgctgagcg agagagtttg cgtgacgaag ccaagaagaa tatcctagaa gcacagatga      4020
     cttacaaacg caactttgac aaaggacgca agcaggatca tgggtacttg atgggtgatc      4080
     tcgtagcaat caagcgaacc caatttgtcg caggccggaa gttggccagt tgttttcttg      4140
     gcccttatga ggtaactaag ataaagagga acggccgcta tgatgtacgc aaagcagccc      4200
     aagtggaagg accaaatcag acgagcacaa gctccgacaa tatgaagctg tggaggtatg      4260
     ttgttgacaa tgacgatccg gaatcatctg ggacagatga tgatgatcag gagggccgaa      4320
//
ID   Gypsy-19_DWil-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   scaffold_181074;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_DWil_;
KW   Gypsy-19_DWil-I; Gypsy-19_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-286
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181074; Positions   55063   54778.
XX
SQ   Sequence 286 BP; 85 A; 51 C; 69 G; 81 T; 0 other;
     tgtgaagagg tgttgtccgc atcagaatgg ttatgcccgt ccctggtaat tgggagagcg        60
     tctacaagag cattgagaga gcgaattgga gagtcagtcg tcagtcggca gtcgtcagtc       120
     gggagttgca gttgaaagtt gaaagttgtc agtcgaaagt tgtcagtcga aagtcggtcg       180
     cgatgcccaa tcaaagttgt tctcagttgt cttttatata acctaaccac ccagaatgtc       240
     tataatactt taattaataa acataatcaa tataataaac tttaca                      286
//
ID   Gypsy-19_HeAr-I repbase;    DNA;    INV; 5594 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5594
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5567-5567 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. The consensus is ~94% identical to
CC   that of Gypsy-27_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           553..1761
FT                 /product="Gypsy-19_HeAr-I_1p"
FT                 /translation="MSQQLRDLHAKLKYLREYVIKLGPNGRTGNLGFKKLE
FT                 EAEKEYSKLECILTQLNQEVKDQKLDKESCDICQILIDEIRHNFTKIKSLF
FT                 SLRDSSSQTNDRDLIEYSXCVTKMSDSFDIKTAISLLPVMNGQEQVTNQLI
FT                 DGILLYSSLINDDSRSKLIDFVLKTRLSPSAKLRLKTTYADIESLVGDIRF
FT                 YLLPKKSAVALQTQLFRATQGRRTIEKFGSEIEELFVNLTIAQANEKRDAY
FT                 EVLRPLNERTAIKRFSDGLTDKRLSTIIASRQFASLSEAITAAVDEQSMSL
FT                 HPQEQVMQFRANHNVKRGNSRGFRGRGDRHFYNTKNNYNRNYNCYENSTGQ
FT                 GTSHSVNRGKHSGGQRQRQHFRGRPMRYQRVQHNTQESNGQDNLRNDVANN
FT                 NDNLEFFRT"
FT   CDS           1748..5404
FT                 /product="Gypsy-19_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SFFVPKQCTHSIFSYNNFCVVNCQLNDSNIDLSLLID
FT                 SGASLCVLKYEWLSRHRQLLNLVEQDKIVIKGISGNLESMGYIYLNITINH
FT                 VNFNHKFHIFEHLSCAAEGILGQDFFEQYNAVLNYKDGTLTLESQNESVSV
FT                 NVNKNTFIIPPRCEVIKHIPTSQNCDCVILSREVHKGVYTAGVISKPHNGF
FT                 IPVRILNTTDSSVSINTSELTVSCLDNFYVCKFDDDCLSVDRVRTLLATLQ
FT                 LHAYLNKEEQISIEKICAKYADVFHLPGDTLTTTNLIEHSIQLKEDASPSY
FT                 VKPYRLPKALKGEVQKQIDEMIKNDIIEESISEWSSPILLVPKKTDRSGER
FT                 KWRLVVDYRQLNNRIKDDKFPLPNITEILDSLSNNIYFSKLDLSQGYYQLS
FT                 LDEKSRKYTAFTTDRQYQMKRCPMGLKTSPSAFARLMTIAMSGLNYKSCFL
FT                 YQDDCIVVGNCLETHNKNLIKILECLRKVNLKLNPLKCEFLRKEIVYLGHK
FT                 ITSEGIFPEPSKVSCLQKYPVPQNVDEVKRFVAFANYYRRFIPNFAEIAYP
FT                 LNALCKKNVPFVWSDECERAFNKLKDILISPTVLDYPDFSDKNNFTLQTDA
FT                 SKLGLGAVLSNSNGKVVAYASRNLKPAETRYPVIELELLAIVWAVRHFRPY
FT                 LYGKKFYIKTDHKPLIYLFNMTDPSSRLTKFRLYLEEYDFEISYVPGRHNA
FT                 AADALSRIPITSNSLKEMQQHVVSVITRAQARRLRTDCDNNDMTTEVSSTS
FT                 RPDQPKVVEILKRPIDSIELILFCNQNTLKQIEKLKHFNSDNGNCKFVPEK
FT                 SAIFIISQSLSTVSVLTRELQRLCKQIKINELVIIKNKQYERFVNNFIKEM
FT                 SHLDGFPKLLVIKDVTRITDKDTKTVILNDFHLLPTSGHAGVNRMLNNIRK
FT                 YYYWPGMTNDVSEYVKKCKNCQIQKHSNRHTKEPMIITSTASTAFERVSLD
FT                 LMGPLDVDNFNYKYILTLQCDLTKYVEAYPLEKKDTVSVARSFVNNFILRY
FT                 GIPTEIITDQGTEFMSSVFTEICNLLHITKLHSTAYHHETLGGLENTHKVL
FT                 GAYLRIQCDNNKTDWSGWLPFWCFSFNTTVHSETKYTPFELVFGKHCNLPS
FT                 NIEQNSYVDPLYNPDSYPLELKYRLQRAQAEARNNLLFNKKIRKMNFDKTI
FT                 NSVIYKKGDLVLIKNQVGDKLDKIYLGPYKVIEDVSPNVKILRDNKAYIIH
FT                 KNNTKKFVT"
XX
SQ   Sequence 5594 BP; 1987 A; 869 C; 1060 G; 1677 T; 1 other;
     tggcgaccct tagccagcag ttaaaatttt gcaacatgtg taaaatacga aagtagctga        60
     ataaatatga agaaatacaa ttacgaagaa tagaagtttg tggcgacgag aaataagaaa       120
     ggcaagattt tcaaactaca gaagattttc aagctacaga agattttcga ctacagaaaa       180
     aaaactctca cagaagattt ggacgaagcg atgaaaacaa tacaagaaga cagaaaaggg       240
     tgtagctgcc gggagccggg agaatgctca agccttatga tgagaggata tgcagggcgc       300
     cgggagataa attgtacggg tccagtgagg agcagctggg agtcagttcg agtccaatgc       360
     tgaggagttt attcacccgc gctacgtgag acgtcatgac ctgcatatac gttgacagta       420
     aatacgtgcc tactgcaatg taagtttttc tccacttttg tatttttttt gcgttatttg       480
     ttataaagcg ctgttttaaa atgttattat taaggtcatg cataagtact ttatattcag       540
     tttgaggaaa ttatgtcaca acaattgcga gatttacatg ctaagttaaa atatttaaga       600
     gaatatgtaa taaaacttgg tccaaatgga cgtacaggaa atttaggttt taagaaacta       660
     gaagaagctg aaaaagaata tagtaaattg gagtgtattt tgactcaact gaatcaagaa       720
     gttaaagatc agaagctaga taaagaatct tgtgacattt gccaaatatt gattgatgag       780
     atacgacata attttacgaa aataaagagc ttattttctt tgagagatag tagtagtcaa       840
     actaatgata gagatttgat agaatattct akctgtgtta caaaaatgtc agactcattt       900
     gatattaaaa ctgcaatttc cctgttgccg gtaatgaatg gccaggagca ggtgacaaac       960
     caacttatcg atggtattct tctttatagt tcgctcatca atgacgacag tagaagtaaa      1020
     ttaatagact tcgtattaaa aacacgtctc tctcctagtg caaaattgcg ccttaaaact      1080
     acgtatgctg acattgaaag tttggtagga gatattcgct tttatttgtt accgaaaaaa      1140
     tcggcggtag cattacaaac ccaattattt agagctactc aaggtcgcag gactatagaa      1200
     aaatttgggt ctgagatcga ggagttgttc gtaaatttga cgattgctca ggctaacgag      1260
     aagcgcgatg catatgaggt attgcgtcct ctcaatgaaa ggactgcaat taaaaggttt      1320
     agcgatggtt tgaccgacaa acggctcagc actatcattg cctcgcgaca gtttgcgtcc      1380
     ttatctgaag ctattacagc tgcggtagac gagcagtcta tgtctctcca cccacaagag      1440
     caggttatgc aatttagagc caaccacaat gttaaacgcg gaaacagcag aggattccga      1500
     ggccgaggag ataggcattt ttataacacc aagaataatt ataatcgtaa ttataattgt      1560
     tatgaaaata gcacaggtca aggaacttca catagcgtaa atcgcggcaa acactcaggc      1620
     ggtcagcgcc agcgtcagca ttttcgcggc cgtccgatgc gttatcagcg tgttcagcat      1680
     aacacgcaag agtccaatgg ccaagacaac ttgcgcaatg atgtcgcaaa taataatgac      1740
     aatttagagt tttttcgtac ctaaacagtg tactcattct atttttagtt ataacaattt      1800
     ttgtgtagtt aattgtcaac ttaacgatag taatattgat cttagtttgt taatcgatag      1860
     tggggctagt ttatgtgtac tgaagtatga atggttgtcg cgacataggc agttattgaa      1920
     tttggtagaa caggataaga tagttataaa aggaattagt ggtaatttag agtctatggg      1980
     atatatttat ttaaatatta caattaacca tgtgaatttt aatcataaat ttcacatttt      2040
     tgaacattta tcttgcgccg cagaagggat actcggtcag gattttttcg aacaatataa      2100
     cgcagtatta aattacaaag atggtacact gactttagaa tcccaaaacg agtctgttag      2160
     tgttaatgtt aacaaaaata cgtttataat tccaccccgt tgcgaagtca tcaaacacat      2220
     cccgacgtca caaaattgtg attgcgtcat tttgtcaaga gaagttcata aaggagtgta      2280
     cacagcggga gtaatatcga agccacataa tggatttatt cctgttagga tattaaatac      2340
     aacagatagt tcagttagca taaacacttc agaattaact gttagttgtc tagataactt      2400
     ttatgtttgt aagtttgatg acgattgttt atctgttgat agagttagaa ctttgctcgc      2460
     tactttgcaa ctacatgcat atctgaataa agaagagcaa ataagcattg agaaaatatg      2520
     tgccaagtat gcagatgttt ttcacttacc aggagatacg ctcacaacaa ctaatttaat      2580
     agagcattca atccaactaa aggaagacgc gtccccatca tatgtcaagc cttatcgatt      2640
     gccaaaagcg ttgaaaggcg aggtacaaaa acaaatagat gaaatgatta aaaatgatat      2700
     catagaagaa tctatttcag agtggtcaag tcctatttta ttagtaccta aaaagacaga      2760
     taggtcagga gaaaggaaat ggagacttgt agtagattat cgccaactca ataataggat      2820
     aaaagatgat aagtttccgt tacctaacat cactgagatc ctagattcgc tatcaaacaa      2880
     catttatttt tcaaaattag atctcagtca aggatattat cagctgtcat tagatgaaaa      2940
     atctagaaaa tatactgcat tcacaacaga taggcagtat caaatgaaac gatgtccaat      3000
     gggattaaag acatctccaa gtgcctttgc acgtcttatg actatagcga tgtcagggtt      3060
     aaattacaaa tcatgtttcc tttaccaaga cgattgtatt gttgtaggta actgtcttga      3120
     aacgcataac aagaacctca taaaaatttt ggaatgttta cgaaaagtaa atttgaagtt      3180
     aaatccatta aaatgtgaat ttttgcgtaa ggagatagtt tatttaggtc acaaaatcac      3240
     ttcagaaggt atatttcccg aaccatcaaa agtatcatgc ctgcaaaaat accctgtccc      3300
     acagaatgta gacgaagtca agaggtttgt tgcgttcgct aactattata ggcgttttat      3360
     tccaaatttt gcggaaatag cctatccttt gaatgcgtta tgtaagaaaa acgtaccgtt      3420
     tgtgtggagt gatgaatgcg agagagcatt taataagtta aaagatatac tcattagtcc      3480
     gactgtactt gactatccag actttagtga caaaaataat tttacgttac aaactgacgc      3540
     atcaaaactt ggattaggcg ccgtactgtc taatagtaat ggcaaggtag ttgcatatgc      3600
     cagccgtaac ttgaaaccag ctgagacgcg ataccctgtg attgagttag aattacttgc      3660
     tattgtttgg gctgttcgac attttagacc ttatttatat gggaaaaagt tttatataaa      3720
     aactgaccac aagccattga tttacttatt taatatgacc gatccttcaa gccgtttaac      3780
     taagtttaga ttatatcttg aggagtacga ttttgaaatc agttatgtcc caggacggca      3840
     caacgcagct gcagatgcat tgagccggat acctattaca tccaacagtt taaaggaaat      3900
     gcaacagcat gtagtatcgg tcataacaag agcacaggct cgtaggttac gtactgactg      3960
     tgataacaat gacatgacta cggaggtatc ctctacttca aggcctgatc aacctaaagt      4020
     agtggaaatc ctcaaacgac ctattgacag cattgaattg attctatttt gtaatcaaaa      4080
     tacacttaaa cagatagaaa aattaaaaca ttttaatagt gataatggta actgcaaatt      4140
     cgtgcctgaa aagtcagcaa tttttattat ttctcaatcg ttgtctaccg taagtgtgtt      4200
     aacgagagaa ttacaacgtc tttgcaagca aatcaaaata aacgaactcg taataattaa      4260
     aaataagcaa tatgaacgat ttgtaaacaa ttttataaag gaaatgagtc atttggatgg      4320
     tttccccaag ttacttgtta ttaaagatgt gacaagaatt actgacaaag atacaaagac      4380
     tgtgatctta aatgacttcc atctgttacc caccagtggc cacgcggggg taaacagaat      4440
     gttaaataat attaggaagt attattattg gccaggaatg actaatgacg tatcagaata      4500
     tgtaaagaaa tgtaaaaatt gtcagattca aaagcattcc aatcgacata cgaaagagcc      4560
     aatgattatc acatccacgg catccactgc ttttgagaga gttagtttag atttaatggg      4620
     tccattagat gtagacaatt ttaattataa atatattttg acattacaat gtgatctgac      4680
     taaatatgtt gaagcttacc ctttagaaaa gaaggataca gtttcagtag cacgatcatt      4740
     tgtaaataat tttattctta gatatggtat ccctacagaa ataataacag accagggaac      4800
     agaatttatg tcatcagtat ttactgaaat ttgcaattta ttgcatataa caaaactgca      4860
     ttcaacagct taccatcatg agactcttgg aggtttggaa aatactcata aggttttagg      4920
     agcttatcta aggattcagt gtgataataa taaaacagat tggagcggtt ggcttccatt      4980
     ctggtgcttt tcatttaata ctacagtcca ctctgagaca aaatacactc catttgaatt      5040
     agtatttggt aaacattgta atctaccatc taacatagaa caaaattcat atgttgatcc      5100
     tttatataat cctgattctt atcctttaga actaaagtat agacttcaaa gagcacaagc      5160
     tgaagcaaga aacaacttgt tatttaataa aaaaataaga aaaatgaatt ttgataaaac      5220
     tattaattca gtaatatata agaaaggaga tttagtatta attaaaaatc aagtaggaga      5280
     taagttagat aagatttatt taggaccata caaagtcata gaggatgttt caccaaatgt      5340
     taaaatttta agggataata aagcatatat aattcataaa aataatacaa aaaagtttgt      5400
     aacttaaaat gtcgtttaat tttagtttta ttggatttgt ttgtaaagta tgaagtctaa      5460
     taatattctg tattaattta gcctaagtaa aaaaaaaaaa taataataat atcattgtat      5520
     taattgagtt taagtaaata aaaaaaaaaa agaattatgt aataatatca tttttttttt      5580
     gaaaaggggg aagg                                                        5594
//
ID   Gypsy-19_HeAr-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-119
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5597-5597 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 119 BP; 33 A; 28 C; 15 G; 43 T; 0 other;
     tgtagtgtgc agctcgccta accctatatt tgtaactgca cacactagat tattacatta        60
     ttacacgaat tgttgacttg aacagttctc ttttattttg cctacatcac tccaataca        119
//
ID   Gypsy-19_LH-I repbase;    DNA;    INV; 4358 BP.
XX
AC   ADOQ01012082;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_LH_;
KW   Gypsy-19_LH-LTR; Gypsy-19_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4358
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012082; Positions    1333    5690.
XX
CC   Positions [3186-3644] - Integrase core
CC   'AAGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..4349
FT                 /product="Gypsy-19_LH-I_1p"
FT                 /translation="MIPSTFTIEPFDPVQGLWTRWLKRLEGSFKLFEVKEE
FT                 KRVPFLLHYIGSAAYNILADRLGTKDPYQQTYNVITETLSNFYEPKPLEVS
FT                 ENFKLMQRKQQDGESIQDFAAALQKLSLNCDMGNYVTKALRNFFIFGLKNK
FT                 RIQQRLLETTDLTLEKAIQIATTMELSEKGTKQLQGEETTLAVCTGKTMAS
FT                 TDKSKKHGNAKLKNNIKKNGARGMSVTCYRCGGSHYASACTLNRNTKCLLC
FT                 GKLGHLRKVCKSSRGNNTKNTEVLAIEQSHFRKKFFTTLNVNNKDVRFEVD
FT                 SGSAVTLMSLTDAKRLFKGERVFTTDLNLVSYTRTPIPLRGYIKVRVKNGN
FT                 RFQKLHLYIVEIDKEPLLGREWISQLNQIKDLQKLTNKLQSIKQITAGDNA
FT                 RLQALLNEFNSITSPSIAKITNVQARLNVKRNTNPVFHKQRPVPFRLRNQI
FT                 EKELEALTQNGILEKVDFSEWVTPIVPVIKKNGTIRICGDYSVSLNPNLNI
FT                 DSHPLPTPDELLTQMAGGKVFSKIDLLQAYLQLEVRPQDRELLTLNTHKGL
FT                 YRPTRLMYGVASAPAIWQRIIENILKDIPGVVVFLDDIRVSSKDVQDHLSK
FT                 LRQIFTRLQKYNIQINVKKSEFLTDQIQYCGYVIDKNGIHKAPDKIDAISK
FT                 MPQPTNLTELRSFLGMIRYYDRFILNVSAILQPLNNLLQKNVKFHWSEDCE
FT                 KSFQAAKRAFTNPKCLAHFDPRLPITLATDASPYGMGAVLSHVYPDGSERA
FT                 IQYASQTLSKTQRSYSQIDKEALAIMFGIKKFHQFLQGTEFTLVTDHRPLT
FT                 QIFSPTKGLPIYTAMRMQHYALTLQSFRYKIKYRKSELHSNADCLSRLPIP
FT                 QTIEEIECKAIDEFQQATFDTLPITAIQVATATKEDKELSKLLKFLTTYSN
FT                 ANTNSKNNKFYTIPYEEFSLLHGVIFQGHRVVIPVNLQKKILHELHLDHFG
FT                 MIKMKNLARGYVWWNKIDNDIEKLTQNCHNCNSHRNNPPKVSNHVWEPAQS
FT                 PFERVHVDFAGPFLGHHFFILIDSYTKWPEIHIVRDITAKTMINICRQIFY
FT                 TYGLPKYIVSDNGTAFTSKEFKNFLNSHGIIAKYTAPHHPATNGQAKRYVQ
FT                 ILKNSLRKMQSTHANTHINLQTLLFQYRNTPHIATGKAPAELLFSRKIRTK
FT                 FDLLRPSSTKHTIHFERPFKFTVGKRVSCRNYINKIKWLFGTVIEQLGDLH
FT                 FKIRLDDGRVWKRHINQMRPIGDDTLKNSNKDFSDYYCDSYDTSPPNNCDN
FT                 ANYNTNRATNVNENTSEGTIVNASPSQVHTSTNSPSHTLVNTSDNSTPTSP
FT                 GPSYSTLTASEAGSPIFSTPQGSWYASTPKPLSSTSPPRTPEAKDTTPPIK
FT                 GALRPKRQIRAPRYLQDFEVNESQISK"
XX
SQ   Sequence 4358 BP; 1511 A; 882 C; 793 G; 1172 T; 0 other;
     acttggcgac gaggattgag aaattttgcg ccgaggaggg tggcaaatat cgtgcaagta        60
     caagcacgtt gcacgtacgt ggcagctatt acgttatacg caacaagtgg tgatcgcaat       120
     ttaattgcaa gaaactgtgt acgcataaca ttactggtta cgctatacaa taatccgcca       180
     tgattccaag cacatttacg atcgagccat tcgatccagt ccaaggctta tggacgaggt       240
     ggctgaaacg attggaagga tctttcaaat tattcgaggt aaaggaagaa aaacgtgttc       300
     ccttcctgct acactacatt ggttcggcgg cgtataatat tttagccgac cgacttggta       360
     caaaggaccc atatcagcaa acatacaacg tcattacaga gacgttatcg aacttctacg       420
     agccaaaacc gttagaagta tcggaaaatt tcaaattaat gcaaaggaag cagcaggacg       480
     gcgaatcaat acaggatttt gccgcagctt tacaaaagct atccttgaat tgcgacatgg       540
     gcaattacgt cacgaaagcc ctacgcaact ttttcatatt cggactcaaa aataaaagaa       600
     tacaacaacg attgctagaa actacggacc tcacactgga aaaggccata caaatcgcta       660
     cgacaatgga attgtcggag aaggggacga aacaattaca aggcgaggag accaccttgg       720
     cagtctgcac gggaaaaaca atggcatcta cagataagtc taaaaagcac gggaacgcga       780
     aattgaaaaa taacattaaa aaaaatggcg cgcgcggaat gtcggttacg tgttatcgtt       840
     gcggcggaag ccattacgcg tcggcatgta cacttaatag aaatacgaag tgcctcttat       900
     gcggaaagtt gggacatctt agaaaagtct gcaaatcgtc ccgcggaaac aatacaaaga       960
     atacggaagt actcgcgatc gaacaatcgc attttaggaa aaagtttttc actacattaa      1020
     atgttaataa taaagacgta cgtttcgagg ttgatagcgg atcagccgtt actttaatgt      1080
     cgttaaccga tgcaaaaagg ttattcaaag gcgaacgcgt attcactaca gatttgaatc      1140
     ttgtttctta cacacgcacg cctattccat tacgcggtta cataaaagtt cgagtcaaga      1200
     atggtaatcg ttttcagaag ttacacttat acatcgtcga aatagacaag gaacctctat      1260
     taggccgtga gtggatatcg caacttaatc agattaagga tctacaaaag ttaacgaata      1320
     aattacaatc aattaagcaa attactgctg gcgataatgc gcgactacaa gcactgttaa      1380
     atgaatttaa tagtattaca agtccgtcta ttgcgaaaat tacgaatgta caagcgcggt      1440
     taaatgttaa gcgcaataca aatccggtat ttcataagca gcgtcctgtg cccttccgtt      1500
     tacgaaacca gattgaaaag gaattagaag cactcacgca aaacggtatt cttgagaaag      1560
     tggatttctc agaatgggtc acacctattg tacccgttat taagaaaaac ggaacaattc      1620
     gcatttgcgg ggactacagc gtctcgctta accccaattt aaatatagat tcgcatcctc      1680
     tacctacacc agacgaactt cttacgcaga tggcgggagg aaaagtcttt tcaaaaattg      1740
     acctcttaca agcttattta caacttgagg ttagaccaca ggaccgtgaa ttacttactt      1800
     taaatacaca taaaggtcta tacagaccaa cacgtttaat gtacggagtc gcatccgctc      1860
     ctgcaatatg gcaacgtatt atagaaaata ttcttaaaga tattccagga gtagtcgttt      1920
     ttctagatga tattagagtc tcaagtaaag acgtacaaga tcatttaagt aaattacgtc      1980
     agatttttac gcgactacag aaatacaaca tacaaattaa cgtgaagaaa agtgaattcc      2040
     ttacggatca aattcaatat tgcggatacg tgatagataa aaacggtatt cacaaagctc      2100
     cggataaaat tgatgcaatt tcaaaaatgc cccaacctac aaatttaact gaattacgaa      2160
     gttttctggg catgatacgg tactacgata gatttattct aaacgtaagt gctattttac      2220
     aaccattaaa taatctctta caaaaaaacg ttaaatttca ctggtcagaa gactgcgaga      2280
     aaagttttca agcagcaaaa cgagcattta caaacccgaa atgcttagct cattttgatc      2340
     ctagattacc aattacatta gctacagatg caagtcctta cggtatggga gcagttctct      2400
     ctcatgttta tccagacggt tcggaaagag ccattcaata cgcatctcaa acgctttcaa      2460
     agactcaacg atcatattct caaattgata aagaagcttt agctattatg ttcggtatta      2520
     aaaagtttca tcaattctta caaggtacag agtttacact cgttacggac catcgtccac      2580
     ttacacaaat tttttcaccg accaagggtt taccgattta cacggctatg cgcatgcagc      2640
     attacgcatt aacattacag agttttcgtt acaaaattaa atacaggaaa tcagaattac      2700
     attctaatgc agattgcttg tcgagattac caataccgca aactattgaa gaaattgaat      2760
     gcaaagcaat agatgaattc caacaagcta cgttcgatac attgcctatt acggcaatac      2820
     aagttgctac agctacaaaa gaggataaag aattatccaa attactaaaa ttcctaacta      2880
     catattccaa tgctaacaca aattctaaaa acaataaatt ctatacaatt ccttacgaag      2940
     aattttcttt actacacggt gttatttttc aaggacacag agttgtcatt ccagttaatc      3000
     tacaaaagaa aatactacat gaattgcatt tagatcattt tggtatgatt aaaatgaaaa      3060
     atctcgcaag aggttacgtt tggtggaaca aaattgacaa cgatatagaa aagttaacgc      3120
     aaaactgtca taattgtaat tcacatagaa acaatccacc taaagtttca aatcacgtgt      3180
     gggaaccagc tcaatctcct ttcgaaagag tacacgttga ttttgcaggt ccatttttag      3240
     gacatcactt tttcatactg attgattcgt acaccaagtg gccagaaata catatcgtta      3300
     gagatattac agcaaaaact atgattaata tttgtagaca aatattttat acgtacggtt      3360
     taccgaaata cattgtatcc gataatggta ctgcctttac atcaaaggaa tttaaaaatt      3420
     ttcttaattc acacggtatt attgctaaat acactgcacc acatcaccct gcgacaaacg      3480
     gacaagccaa gcgttacgtt cagattctta aaaattcttt aagaaaaatg caatctacac      3540
     acgcgaatac gcatattaat ttacaaacac tactttttca atatcgcaat actccacaca      3600
     ttgcaacggg aaaagctcca gcagagttat tattttcgag aaaaatacgt acaaaattcg      3660
     atttgttacg tccgtcaagt acaaaacata cgattcattt tgaacgtcct tttaaattta      3720
     cggtgggaaa aagagtaagt tgtcgaaatt acatcaataa aattaaatgg ttattcggta      3780
     cggttattga acaattaggt gatctacatt tcaaaatacg cctagacgac ggtcgtgtct      3840
     ggaaaaggca cattaaccaa atgcgtccga taggtgacga tacacttaag aacagtaata      3900
     aagatttcag tgattattac tgtgattcct acgatactag tccgccgaat aattgtgata      3960
     acgcgaacta caatactaat cgtgcaacta atgtaaacga aaatacgagc gaagggacaa      4020
     ttgtaaatgc gagtccttcc caagtgcata cttcaactaa cagtcctagt catacgttag      4080
     ttaatacaag cgacaactct acacctacat cgccaggtcc ttcttactct acgcttacgg      4140
     cttctgaagc cggttctcca attttctcta cgccccaagg atcctggtat gcttctactc      4200
     ctaaaccact ttcttccact agtcctccta gaactcctga agcgaaggat acaacacccc      4260
     caattaaggg agcgcttcgt ccgaaacggc aaattcgcgc tccaaggtat ttacaagatt      4320
     ttgaggtcaa cgagtctcaa atttctaagt gaggggag                              4358
//
ID   Gypsy-19_LH-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   ADOQ01012082;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_LH_;
KW   Gypsy-19_LH-I; Gypsy-19_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-270
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012082; Positions    1063    1332.
XX
SQ   Sequence 270 BP; 60 A; 72 C; 66 G; 72 T; 0 other;
     tgttgtgtgg ccgttcatat aacgcgccac tgcgtcgcgt gccagcctcg caatggctca        60
     tgcggatagg ccttaaggaa gagaccgcgt gacagcgctg gcgtctgcgt acacctacct       120
     tcttgcgggg aaactctctc tgagtttgag agatgcatac aggttgtact aatcaccacg       180
     atttgcatta aagctcatat tgttgttata ctgagtgtat tcctcacttc cacgcccacg       240
     cggcactgtg tgctaacgtt atacacaaca                                        270
//
ID   Gypsy-19_LMi-I repbase;    DNA;    INV; 4376 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4376
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(68..2170,2086..2769,2773..3141,3134..3583,
FT                 3599..4255)
FT                 /product="Gypsy-19_LMi-I_1p"
FT                 /translation="MEALVQVLVEQQKELMAIMQQAIPALLSKQSSSAPFP
FT                 PYDETAEDWDAYEHRLRQHFQAFHVDDAEVCRALFLSWISPSLYQVLRQLA
FT                 PLQEPSSLSFDALCSLLSSYYRRRTHVVAARVEFYQCKKQPHQSYRAWAAT
FT                 LHGLSRKCHFVTEKSKESYAHIMVRDVIVRSAPDREVRHRALQLEDPSLEE
FT                 VLSIAQSYEVSHAAGQQLEAWCDVAAVRGGADAPCAGRTMCGRYKPAVPAA
FT                 SARHVNRVPTAGPSYRPARRAIQNMTDQSVPGVGPFVANATKKDMWQKFAA
FT                 QRHRRRFGGYGRRYSGSFSGPGTRQYYKQALIEVSILSRRLHLQVDTGAAV
FT                 SLLNAQTYSDLGSPPLAPVHRRLRGYGKQCIPLLGQFTTEVTYKSVTRPLT
FT                 FIVVCDASSANLFGLDAFQAFGFAITDTIQLVSEDVPYHSLESLTSEFRDV
FT                 FEEGIGCVSDFQAHLTLKPAARPRFFRARQIPLALRPQVKAELDRLTALGV
FT                 VLPTSSSEWATPLVIVRKPSGKLRLCGDFKATVNSQSVVDTYPLPRSEEVF
FT                 AQLTGGQFFSKLDLSEAYHQIPLDEDSKRLAVINTPFGLFQYQRLAFGMAG
FT                 APAIFQRYLEQVTSAIPHCINYLDDIIVTGRNTKEHLHNLRTLFLKFRSVG
FT                 LRCNLSKSKFFQPSLEYLGHVISRHGVQPWRVWCRVSGTFRAPLHCKSCKF
FT                 FARRPALASLVQGIRDLPRPSSLQELQVFLGKIAYYHRFIPGASTLAHPLY
FT                 RLLRKGVPFEWSPACERAFASLKDRLTSAPCLATYDPSKPLVLATDASQYG
FT                 VGASLPIAMRMAPSSRWHLHPRLLTQLRPITRRWRRRPWPLVYAVTKFHPF
FT                 LYGTKFQLITDHKPLISLFSPPPKFRIGLPTDCSAGPCSFQSTSMTFIFAL
FT                 LASMPTPMLFPDSRWAQIRSSIGKRCVFIWMSLPAKRWMASRSLVLESQRQ
FT                 QRRTQCFGKWCVSFNRGGLPGLQAVPLTLFAITLFCETASRLRGSSPSFDC
FT                 GYSLRVVVPASLRRKFSSCYMRDTGVFHVLSLWLADMYTGPALTEKQRNRT
FT                 SSGLPPVCEPTGVSQGGILSLASCNPALGARPHRFCGPFLNGYWLIVIDAY
FT                 SRFPYVVRCSSITSEIAIQALSKIFSVEGLPVTLVSIMALSFFRSLSRTFV
FT                 RASAFVMFARPPFIHNQMGKPSDGATFKTQMKKYLQDFPLRRRRHIELPMG
FT                 ERSPAELLHAANRGLCCTSSVLTSPASPGVPGFPPGTSVWARGFGRNPRWI
FT                 PAVVLRRNGRRLYTLRVGDREVRRHQNQLRRRTDPTPLPTGTGFSMADAPS
FT                 SAAVPQGNLTPFPSARLLRGASPAASPRGYTAPQSPEITRQELPPRLARCL
FT                 RRKVPPPAAFASIHTASSSTYRRGHGPRVCHRFCPGLRWGDDGGLFARAFP
FT                 PILEGPS"
XX
SQ   Sequence 4376 BP; 849 A; 1334 C; 1141 G; 1052 T; 0 other;
     caagtggcga cgagtagggt catcctccgc gtgttgtttt gttcgtcggg ttcgcaaagg        60
     tccaggcatg gaagctttag ttcaagtttt ggttgagcag cagaaggagc tcatggccat       120
     catgcagcag gcgattccgg cgttgctttc aaaacagtct tcttcggcgc ccttcccccc       180
     gtacgacgag acggcggaag attgggacgc ctatgaacat cgtcttcggc agcatttcca       240
     ggcctttcat gtcgatgacg cggaggtatg tcgtgctctg tttttgtcgt ggatatcccc       300
     ctcgctttat caggtgttgc ggcagttagc accgttgcaa gaaccctcat ccttgtcttt       360
     tgacgcttta tgctcgttgt tgtcgtccta ttatcgccgc cgcacgcatg tcgtggctgc       420
     gcgggtcgag ttctatcagt gcaagaaaca gccccatcag tcttaccgtg cctgggccgc       480
     tactttgcac ggcctcagcc gcaagtgcca ttttgtgacg gagaaatcaa aagagtcgta       540
     tgctcacatt atggttcgcg acgtcatcgt tcgttcggcc ccggatagag aggtcaggca       600
     cagggctctg cagttggaag acccttccct tgaggaagtc ctctctatcg ctcaatccta       660
     tgaagtctca catgccgcgg gtcaacagtt ggaagcctgg tgcgacgtgg cggcggtgcg       720
     gggaggcgcg gacgctccgt gcgcggggag gacgatgtgc gggcggtaca agccggccgt       780
     tccggccgct tccgccaggc acgtaaacag agttccgacc gccggcccct cttaccgtcc       840
     tgcccgtcgt gctatacaaa acatgaccga tcagagtgtc cccggcgttg ggccgtttgt       900
     cgcaaatgca acaaaaaagg acatgtggca aaagtttgcc gctcagcggc acagacgcag       960
     gttcggagga tatggacgta gatattcagg aagtttcagc gggcctggca cccgacaata      1020
     ctacaaacaa gctcttatcg aggtttccat tctgtcgcgc cgactccacc tgcaagtaga      1080
     cacgggcgcg gcagtgtctt tgttgaatgc acaaacgtac tcagacctcg ggtctccccc      1140
     gttggcccca gttcacaggc gtcttcgcgg atacggaaaa cagtgcattc ccctgctagg      1200
     gcaattcacg accgaagtca cttacaaatc agtcacgcgc cctcttacct ttattgtcgt      1260
     ctgtgatgca agttccgcca acctttttgg attggatgcc tttcaggctt ttggttttgc      1320
     gattacggac accattcagt tggtctcaga agacgttcca tatcactcat tggaatcttt      1380
     gacatcagaa tttcgagacg tctttgagga aggcataggg tgtgtttccg attttcaggc      1440
     ccacttaaca ttaaagccgg cagcgcgccc gcgttttttc cgggctaggc agatcccctt      1500
     ggctctccgc cctcaggtaa aggcagaact ggaccggctg acagccctcg gggtggttct      1560
     acccacgtct tctagtgagt gggccacgcc cttagttatt gtgaggaaac cttccggcaa      1620
     attgcgcctt tgtggcgact ttaaggccac cgtcaattcc caatcagtgg tggacaccta      1680
     cccactgcct cgttcagaag aagtgttcgc ccagttaaca ggaggccaat ttttttctaa      1740
     gctcgatctt tcggaggctt accaccagat acctcttgat gaggactcca aacgtctggc      1800
     ggtaatcaac accccgtttg gcctttttca ataccagcgt ctggccttcg ggatggctgg      1860
     ggcaccggca atatttcaac gttatctcga gcaggtcacg tcagcaatcc cccactgcat      1920
     caattacctt gatgacataa tagtcacagg tcgcaacacg aaggaacact tgcacaacct      1980
     ccggaccctc ttcctcaaat tccggtccgt gggcctgcgg tgcaatctca gtaaatcgaa      2040
     gttctttcaa ccgtccctcg agtacttggg ccatgtcatc tctaggcacg gcgtccagcc      2100
     ctggcgagtt tggtgcaggg tatcagggac cttccgcgcc cctcttcact gcaagagttg      2160
     caagtttttt taggcaagat cgcctattac caccggttca tccccggggc ttccaccttg      2220
     gctcatcccc tgtaccgcct tctgcgcaag ggtgtccctt ttgagtggtc tcccgcatgc      2280
     gagcgggctt tcgcttcttt gaaggaccgc ctcacatcgg ccccgtgttt ggcgacttac      2340
     gacccctcta agccgttggt cctggctacg gatgcttcac agtatggggt gggggcgtcc      2400
     ttgcccatcg caatgcggat ggctccgagc agccgctggc atttgcatcc aagactctta      2460
     acccagctca ggcccattac tcgcaggtgg agaaggaggc cctggccatt agtctacgct      2520
     gtgaccaagt ttcacccctt cttgtatggc acgaagtttc agttaatcac agaccataaa      2580
     ccgttaatat cattgtttag tcctcctcca aaattccgga tagggctgcc caccgactgc      2640
     agcgctgggc cctgttcctt tcaaagtacc agtatgacat tcattttcgc cctactggcc      2700
     agcatgccaa cgccgatgct ctttccagac tcccggtggg cccagatccg cagttcgatc      2760
     gggaagagat aatgtgtttt catttggatg tcgcttcccg ccaagcggtg gatggcttcc      2820
     cgatcactag ttctcgagtc gcaaaggcaa cagaggcgga cccagtgctt cggcaagtgg      2880
     tgcgtctcgt tcaacagggg tggtcttccc ggcctccagg ccgtgcctct gaccctcttc      2940
     gcaattactt tgttctgcga gaccgcctct cgtcttagag ggagttctcc ttctttcgac      3000
     tgcggttaca gtctccgcgt ggtggttccc gcgagtttgc gacggaagtt ctccagctgt      3060
     tacatgaggg acactggggt gtttcacgta ctaagtcttt ggctcgcaga catgtatact      3120
     ggcccggcat tgacagagaa atagaacatc tagtggcctg cccccagtgt gcgagccaac      3180
     aggcgtctcc cagggcggca ttctctccct ggcctcctgc aacccagccc tgggagcgcg      3240
     tccacataga ttttgcggcc catttctaaa tggttattgg ctcattgtga ttgatgcata      3300
     ttcacgcttc ccatatgtgg ttcgctgctc ttcaatcact tccgagattg ccatccaagc      3360
     actctccaaa attttctcgg tggaaggtct gccagtcact ctagtatcga taatggccct      3420
     cagtttcttt cgcagtcttt ccaggacttt tgtacgcgct tcggcattcg tcatgttcgc      3480
     tcgcccccct ttcatccaca atcaaatggg gaagccgagc gatggtgcga cattcaagac      3540
     ccaaatgaaa aagtacctac aggatttccc gctgaggagg cgttgacatt tttcttgacg      3600
     gcatatcgaa ctacccatgg gggaacgcag ccccgcagag ctcctccacg ccgccaaccg      3660
     cggactctgc tgcacctcct ccgtcctgac ctcgccagct tcgccggggg tgccaggttt      3720
     tccgccgggt acgtcagtct gggcacgggg gtttggtcgc aatccccgct ggatacctgc      3780
     agttgtcctg cgccgcaacg gccgcaggct ctacacctta agagtagggg accgggaggt      3840
     acgtcgtcac caaaatcagc tccgtcgcag aacggacccc acccccctcc ccacaggcac      3900
     cggcttctca atggcagacg ccccgtccag tgcggcagtt cctcagggta acctcacccc      3960
     cttcccatcg gctcgcctct tacgaggagc ctcgcctgct gcatcccccc ggggctacac      4020
     agcaccacag tcaccagaga ttacccggca agagcttccc ccccggctgg cccgctgtct      4080
     caggaggaag gtgccaccac cggcggcctt cgcctccatc cacaccgcct cctcatccac      4140
     ctaccgacgt ggtcatggac ccagagtttg tcaccggttc tgtcccgggc tccggtgggg      4200
     ggacgacggg ggccttttcg cgcgggcatt tccgcccata ctcgaaggtc ccagctagag      4260
     ggttggccga tccactcgac tccagcaccg caatggacgt ggaagtcatc tctcctctag      4320
     gtgctccacc ttccactgcg ggaaccaccg gttctcaccc cccgaaggag gaggag          4376
//
ID   Gypsy-19_LMi-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-237
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 237 BP; 48 A; 82 C; 77 G; 30 T; 0 other;
     tgtagtagcc gccagaaaga tcacgcgagg cgcgcactgg cacggtgcgc cccggacagc        60
     agagcagcaa gtaaggcccg gccaccagag cgcgcgcgta gcctcggcag cgcgctctac       120
     cagcggacaa cacaactccg ccagcacggc ccggccgcgc agtgcgatgt gggccgcgcc       180
     caggcacact cgtgtaagcg ccgcgcagtg ctagtctatc gtgtgttgtg tactaca          237
//
ID   Gypsy-19_MeUr-I repbase;    DNA;    INV; 4314 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4314
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3053-3053 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..944
FT                 /product="Gypsy-19_MeUr-I_1p"
FT                 /translation="MNPAVPLLPTQATAPIPAAVQLSGDLSQITVSSRIPE
FT                 FWTDAPRLWFVQFEAVIANQKLGDESKYNLVITKLAKDSIQQVTDLLLQPP
FT                 MKDRYTVLKDRLLTVYEESELRQVQKLLSEIDLGEQKPSQLLRRMKELARD
FT                 KFSGDTLRILWTGHLPSAVRAILTVSEVKDLEKLAEIGDRFMESSRASSTI
FT                 AEVTTSTSSASHDFLIAEISRLSKSIENMQRGRQQRRHXYNQRGRSQSRNR
FT                 RNVSPRRRNPQSPDWLCFYHFRFANRAHKCVQPCNWKEGKESKEN"
FT   CDS           938..4078
FT                 /product="Gypsy-19_MeUr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GKLETVQSSAGYCIDSANNRLCVTDINTGLRFLVDTG
FT                 ANVSVLPVSHKTKIHSQCNNYKLYAANGTEIRTYGVRNLVLNLNLRKPFRW
FT                 HFIVADVKQPIIGADLLRHYGLLVDLNNRKLIDSDTNLLTLGSIISYTEPS
FT                 VNTVDANHPFLNLLSEFSEITKPISFKECESDNDVYHHIETTGVPVQARAR
FT                 PLPANRYHKVKEEFRLMQELGICRPSKSQWASPLHVVMKKNGDIRPCGDYR
FT                 RLNAITKPDMYPVPRLHNFTYILAGKTIFSRLDINRAYHHIKIAPEDIEKT
FT                 AIITEFGLFEFLRLTFGLRNASQTFQRFMNNSVLKGFDFLFNFIDDVIIAS
FT                 DNLEQHRIHLRKVFERFKNFGITINLAKCDFGKTSIEFLGYQVSVDGIRPL
FT                 DHKVQAIIDYPRPGTVEQLRRFLGMINFYRASIPNAVEHQSVLNAFLKNSK
FT                 RKDKSSIPWTEESIDAFEKCKLSLKNAVILSHPVPDVPLSLMTDASDKSAG
FT                 AVLQQRVNNKWLPLGYFSRKFTKAQEKYSTYDRELTAIFMAIKHFRYIIEG
FT                 CQLTVFTDHKPLIFAFDKIQSNSETPKRTRQLLFISEFTTDIRYIQGSDNE
FT                 TADALSRVETIHCPTSIDYSELADAQECDIGLSQLLNETKYNNSFKKIFIP
FT                 NNNKFIYCETSTSMSRPYIPENLRRIAFNSVHDSSHPGIRLTRKLVAQRFF
FT                 WPDLNRDVGRWAKACIQCQRSKIGRHTISDFQAYPFANRFEHVHIDIVGPL
FT                 PTSAEGYKYLITMIDRYSRWPECIPAKDITAEAVAKIFYESWITRFGSPIK
FT                 LTSDQGRQFESNLFTXLLKLMGIKKYRSSPYHPQSNGIVERWHRSMKAALT
FT                 ARLLSNSSWYTELPTVLLGLRAASRSDNGVSPAEYVYGQTIRLPGDFYNVS
FT                 DKRIDDDLTFLKQLKSTIKNLKPVLRNHQNSRTLFIHNDLGKCEYVFIRND
FT                 AVRRPLTPSYDGPYRVIERRDKVFVIQLPNRKVSISIDRLKPAXLINDQNC
FT                 DVSNCDASATKVLDFTNKNVLCNEKVTKSGRKVKPPVRFNC"
XX
SQ   Sequence 4314 BP; 1399 A; 816 C; 844 G; 1250 T; 5 other;
     ttggtgaccc cgacgtttgg aactgtgaac gaaaattctc gcgagtgaag tagtgttaca        60
     taacctaaaa ctttaccggc gtgaatatga atcctgcagt gcctttatta cctactcagg       120
     caactgcgcc tattcctgca gcggtccaac ttagtggcga tttatcgcaa ataacggtgt       180
     catcgcgcat accggaattt tggactgatg ctccacggct ttggttcgtc caatttgagg       240
     ctgtaatagc gaaccaaaaa ctcggcgatg aatccaagta caacttggtc attacgaaat       300
     tggctaaaga tagcattcag caagtgactg acttactcct gcagccaccg atgaaagata       360
     gatacactgt tctaaaggac agactattaa cagtgtacga ggaatctgag ctacgtcaag       420
     tccaaaaatt attaagtgaa attgatctgg gagaacaaaa accttcacaa ctcctacgcc       480
     gtatgaaaga gttggctcgt gataaatttt ccggcgacac actacgcata ttgtggacag       540
     gacatctacc ttcagctgtg cgcgccatcc taaccgttag tgaagttaaa gatcttgaaa       600
     agttggcgga aattggggat aggttcatgg aatcatccag agcaagcagc actatcgcag       660
     aagtcacaac atccacctca tcagcgtcac acgactttct tatagcagag atttccaggc       720
     ttagtaagtc gatagaaaat atgcaaagag gtagacagca acggcggcat twttacaacc       780
     agcgtggaag atcccaatcg cgaaatcgac gcaacgtctc gccacgcagg cgtaatccac       840
     aatcacccga ctggttatgc ttttatcatt tccgttttgc taatcgagct cacaagtgcg       900
     tacaaccatg taactggaaa gaaggcaagg aaagtaagga aaactagaaa cggtacagtc       960
     gtcggcggga tactgtatcg attctgctaa taaccgccta tgcgttacgg acattaacac      1020
     cggcttgcga tttttagtag acactggagc aaatgtgtca gttttacccg tgtcgcataa      1080
     gacaaaaatc cacagtcagt gtaataatta taagttatac gcagccaatg ggactgaaat      1140
     tcgtacgtat ggtgttagga atttagtatt aaatcttaat cttagaaaac catttcgatg      1200
     gcattttatt gtggcagatg ttaaacagcc tataatcggc gctgatctat tacgtcatta      1260
     tgggttgtta gtagatttaa ataatagaaa attaattgat agcgacacca atttgttaac      1320
     acttggcagc ataatttctt acactgaacc atcagtaaac actgttgatg ctaatcatcc      1380
     ctttctcaac ttgttatctg aattttcaga aattacgaag cctatttcat ttaaggaatg      1440
     cgagtctgat aacgatgttt atcaccacat cgagaccacg ggcgttcctg ttcaagcgcg      1500
     agcgcgccca cttcctgcaa acaggtacca taaagttaaa gaggaattta ggttgatgca      1560
     agaattaggc atatgcagac catcaaagag tcaatgggca agtccattgc acgtcgtgat      1620
     gaagaaaaat ggggatattc ggccttgtgg tgactataga cgtctcaacg ccatcaccaa      1680
     accggacatg taccccgtgc cacgtctgca caactttacg tacatattgg caggtaagac      1740
     aattttttct agacttgaca ttaatagggc atatcaccat attaaaatag cacctgagga      1800
     tattgaaaag acggcaataa ttacagaatt cggcttattt gaatttttac gacttacatt      1860
     tggcttacgt aacgctagtc aaacttttca gaggttcatg aataacagcg tattaaaagg      1920
     attcgatttt cttttcaatt ttattgatga cgtaattatt gcaagtgata acttagaaca      1980
     gcatagaata cacttacgta aagtatttga acgatttaaa aattttggca ttacaataaa      2040
     tttagctaaa tgtgattttg gcaagactag tattgaattt ttaggatatc aagtgtcagt      2100
     ggatggaata cgaccactcg accacaaagt tcaagctatc atagattatc ctagaccggg      2160
     aactgtcgaa caattacgac gttttttagg catgataaat ttttatagag caagcatacc      2220
     taacgccgta gaacatcaat cagttttaaa tgcattttta aaaaattcta agcgtaaaga      2280
     caaatctagt ataccttgga ctgaggaatc aattgacgct tttgaaaagt gtaaactaag      2340
     ccttaagaac gcagttatat tgtcacatcc cgtcccggat gtacctttat ccttaatgac      2400
     ggatgcttcg gataaatcgg ctggggcagt tttacaacaa cgggttaaca ataaatggtt      2460
     accgttaggt tacttttctc ggaaatttac taaagcacaa gaaaagtact ccacttatga      2520
     cagggaattg actgcaattt ttatggctat aaaacatttt cgatatatta ttgaaggttg      2580
     tcagttaact gtatttacag atcataaacc gttaattttt gcctttgata aaatacagag      2640
     taacagcgaa acaccaaaac gcacaagaca attattattc ataagtgagt ttaccaccga      2700
     cattaggtac atccaaggta gtgacaacga aactgctgac gccttatcgc gcgtggaaac      2760
     catacactgt cccacgtcaa ttgattactc ggaactggct gacgctcagg aatgtgatat      2820
     aggactgtcg caattgttaa acgaaactaa atacaataat tcttttaaga aaatttttat      2880
     tcctaataat aacaaattca tttattgcga aacttcaact tctatgagta gaccttatat      2940
     tcccgaaaac ttaagacgaa ttgcttttaa ctctgttcat gattctagtc atcctggcat      3000
     tcgcttgacg cgtaaattag tagcgcaacg atttttttgg cctgatttaa accgtgatgt      3060
     tggacgatgg gcaaaagcct gcatccaatg tcaacgatct aaaattggta gacatactat      3120
     atcagatttt caagcctatc catttgccaa ccgttttgag catgtacata tagatatagt      3180
     tggtcctctc ccgacatcgg cggagggata caaatatcta attactatga tagatagata      3240
     tagtagatgg cctgaatgca tcccagcgaa ggatattaca gcggaggctg tggccaaaat      3300
     attttatgaa tcatggatca cgcgttttgg aagtcccatc aaattgacaa gcgatcaggg      3360
     tcgtcaattt gaaagcaact tgtttacasa acttttaaaa ttaatgggwa taaaaaagta      3420
     tcgtagtagt ccgtatcatc ctcagagcaa cggtattgta gaacgttggc atcgatcaat      3480
     gaaagcagca cttacagcac ggttactaag taattcttct tggtacackg aactacctac      3540
     tgttttatta gggttacgtg cggcaagcag gagtgataat ggcgtaagtc ctgcagagta      3600
     tgtttacggt caaaccattc gtttaccggg agacttttat aacgtgtcag ataaacgaat      3660
     cgatgacgat ttaacgtttc taaaacaatt aaagtctaca attaaaaatt taaagccagt      3720
     attgcgaaat caccagaact cacggacatt attcatacac aatgatttag gtaagtgtga      3780
     gtatgttttc atacgtaacg atgcggtacg cagaccatta acaccttcgt atgacggtcc      3840
     ttaccgggtc atcgaaagga gagataaggt attcgtaata cagttaccta ataggaaggt      3900
     aagtatatca atcgacagac taaaaccagc atwtttaata aatgatcaaa attgtgatgt      3960
     aagtaattgt gatgccagtg caactaaagt attagatttt accaataaaa atgtattatg      4020
     taatgaaaag gtaaccaaga gtggccgtaa agttaagcca cctgttcgat tcaattgtta      4080
     attttaatgt ctacaaatat aatattgtaa ttgtcataac tatactgtaa cactaaacgt      4140
     atcatgtatg cacctacgcc acaaattcat tttgtagtcg tatgcaaatt tacagtataa      4200
     acaacttttt attgattgac taattttatt caacttgttt ttcaaatgta accatgttcg      4260
     tatattataa atttttaatt ttttatctgg attgtaaaaa tttggggggt gtag            4314
//
ID   Gypsy-19_MeUr-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-251
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3034-3034 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 251 BP; 75 A; 45 C; 64 G; 65 T; 2 other;
     tgtagggacc atgtaagtgt gagtggctga gtaaacagtt tgtatgcaag tgtgaagtat        60
     gtgaggagtc gagttagtta ctgcgcacta accgactgga atgcatgtgc acattcwctc       120
     ggggtwtatt ggcacgaata taaagtgaac tttaaagttt cgattttaat ttcatctgat       180
     agtggcagtg actcccgatg caggaacaga gttagggcaa tagactcaca cacactacga       240
     acacaccaac a                                                            251
//
ID   Gypsy-19_MoPha-I repbase;    DNA;    INV; 5122 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5122
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1099-1099 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..1165
FT                 /product="Gypsy-19_MoPha-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MSIHRSPVVTRSHASAAAEGDRADARDLERETGERRV
FT                 VTPRPPSGAAAPEFLLLLEELRGMREEQAQQQREFVEALRRLQFSRATENQ
FT                 LSLSDNIRSAGNVGDALRESGASMEAWGDMRAPVGIKLKPDTFDGTSPLRE
FT                 FLTQFSLIANANRWSESEKAVVLASCLRGKARSLLDSCSASEGSLSFIELK
FT                 SQLELRFGEGELAQNFYTQFTNRKQSPGEDYATLGADLERLSRKAYSECTH
FT                 EVRDKIACSQFIAALSDGFVKRTLQVEGITSLRVAIERAKTLKFINQSCFP
FT                 EKFNGNFRAERKEVSGFKEKEKKNFKGSFKEGERKNKECWQCGATGHFRAE
FT                 CPAAGKSGN"
FT   CDS           1096..4491
FT                 /product="Gypsy-19_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RVLAVRGDRAFPRRMSCGGEVGKLNSVGLTGASSTGG
FT                 ARAPVFARDETVFVRKLGGVSAVARDCCCVSGYFNGKLCVFRIDTGSDVSV
FT                 VSAKIAASFDQERIISCNLKYPTGEKVPIISRVSATISLGEFCINLPCFVA
FT                 EICDECILGLDFLSQTGILNGLFESALGLTGSRVEKRGQICSRIEDCPARL
FT                 SEPLRRIFEESSRGLEFSQKQMFLNFLNEYSHVFSEKVVAGNCNILSHCIK
FT                 LCDSRPIKQVPRRIPLHLQEEVNKILEDMKVQKVIEESNSPWVSPAVMVKK
FT                 KDGTIRFCVDFRKLNAVTIKDSFPLPRIDNILDCLKGNSWFCTIDLKSGYW
FT                 QVSLDPKDREKTAFSVGNGLWQFTVMPFGLCNAPATFERLMEKVLKGLISK
FT                 VCFVYLDDVIVFGKNFEEMLCNLKEVFCRLKNANLKVNPSKCNFLKKEVKY
FT                 LGHVISAEGVATDPEKISSVRDWPLPKNRKQVRSFLGFCSYYRKFVKGFAI
FT                 VAKPLYNLTEENRKFLWSSECQVAFENLKRVLTCPPILSFPSGEGQFILDT
FT                 DASNHGIGAVLSQFQEGEEKVIAYFSRIFNKAERNYCVTRRELLAVVDSVK
FT                 FFHHYLYGRKFLVRTDHVSLRWLMSFRNLEGQLARWMERLQQYDFDVLYRR
FT                 GKIHNNADGLSRRPCLETLCRYCIKVESNEESSKEEIFGRLVFSSENFQEW
FT                 RAAQLQDAVVSKIIHFKEAGTRPDWQEIASGDPSLKIYWSYWDTLLLIDGV
FT                 LHKKWISPNLQRNIFQIVVPRQRIHEILKEAHDSPSGGHFGVNKTLQKVRK
FT                 RFYWVSSKRDVENWCASCKECVAKKGPLGKGKSPMEIYNVGAPFERIQVDI
FT                 LGPLPTSSSGNKYLLVVVDCFSKWPEAVPLKNKRASTVARSLVDQVFSRHG
FT                 IPLELHTDQGRNFECHLFKEMTLLLGIRKSRTTPLHPQSDGQVERQHRSIL
FT                 NYLAKFISENQKDWDRWISLYLLAYRSSKQEAIGMSPAEMYLGQDLRLPLD
FT                 LLRGVSPSTKEEKDSADFVSKLRQRLDSIHHFARQRLSISSKNAKFWYDQR
FT                 ARRKNFEPGQQVWFYNPRRIPGRAPKLQSPWEGPWEVIRKISEVLYCIQKC
FT                 PRSKNKIVHANRLAPYVERRGETT"
XX
SQ   Sequence 5122 BP; 1372 A; 917 C; 1349 G; 1484 T; 0 other;
     tttttggggg ctcgtccggg atccgtttgt cggatcctgt gaagcgcgcg cgagtttaag        60
     agacagaaag tgcgcggagt gaaagaacga gagaacaaga aattcgaaga tgtccatcca       120
     tcgttcccct gtggtgaccc gatcccacgc ttctgccgct gcggagggag acagagcgga       180
     cgcacgagat ttggagcgag agacgggaga gaggcgcgtc gtgactccca ggcctccttc       240
     aggagcagcg gcgccggaat tcctgcttct tttagaggaa ctccggggga tgcgagagga       300
     gcaggcgcag cagcagcggg agttcgtgga ggcacttcga cggctgcaat tttcccgagc       360
     gacggagaac cagctaagtc tctctgataa tattcgttcg gccgggaacg tgggggacgc       420
     gttgcgtgag agcggtgcga gcatggaggc gtggggggac atgcgggcgc ctgtcggcat       480
     aaaattaaaa ccggacactt tcgatggaac gtccccatta cgcgaatttt tgacacaatt       540
     ttcgctcatc gcgaacgcga atcgttggag tgagtcggag aaggcggtgg ttttagcttc       600
     ctgcttacgg gggaaagcgc gttcgttgct ggactcctgt tccgcgagtg agggctctct       660
     ttctttcatt gagcttaaat cgcaattgga gctccgtttt ggggagggcg agctcgcgca       720
     aaatttttat actcaattca cgaatcggaa gcagagtccg ggtgaggatt acgcgacatt       780
     gggggcggat ttagagcgtc tttcccggaa agcgtattct gaatgtacac atgaagtgcg       840
     cgacaaaatt gcttgctcgc agtttatcgc cgcgttgtca gacggattcg taaaacgtac       900
     ccttcaggtg gaggggataa catctttgag agtcgcgatt gaacgggcga aaacgcttaa       960
     atttatcaat caaagttgtt ttccggaaaa atttaacgga aatttccgcg cggaacggaa      1020
     ggaagtttct ggatttaagg aaaaagaaaa gaaaaatttt aagggatcgt ttaaggaagg      1080
     agaacgtaaa aataaagagt gttggcagtg cggggcgacc gggcatttcc gcgcagaatg      1140
     tcctgcggcg gggaagtcgg gaaactaaat tctgtcgggt tgactggggc cagctcgaca      1200
     ggcggagctc gggcccctgt ttttgcgcgc gacgaaactg tttttgtccg aaagctcggc      1260
     ggcgtgagcg cggttgcgcg agattgttgt tgcgtcagcg ggtattttaa tggaaagttg      1320
     tgtgttttta gaattgacac gggctcggat gtgtcggtcg tgagcgctaa gatagctgct      1380
     tctttcgatc aggagcgtat tatttcgtgt aatttgaaat atcctacggg agaaaaagtt      1440
     ccgataattt ctcgtgtttc tgcaacgatt tctttaggtg aattttgtat taatttgcca      1500
     tgttttgtcg cggaaatttg tgacgagtgt atactcggtc tggattttct ttcccagacg      1560
     ggaattttaa atggattgtt tgagagcgcc cttggtttga cgggcagcag ggtggagaag      1620
     cgcgggcaaa tttgttctcg aattgaggac tgccctgctc ggctctccga accccttcga      1680
     cgaattttcg aagaaagttc tcgtggactt gaattttcgc aaaagcaaat gtttttaaac      1740
     tttttaaatg aatattctca tgtattttct gaaaaggttg ttgctggaaa ttgcaatatt      1800
     ttgtctcatt gtataaaatt gtgtgattct cgtcctataa aacaggtacc tcgtcgaatt      1860
     ccccttcatt tacaggaaga agtgaataaa attttagagg atatgaaagt ccaaaaagtg      1920
     attgaggagt caaacagtcc ttgggtctct ccagcggtta tggtgaaaaa aaaggatgga      1980
     actataaggt tttgtgttga cttccgaaaa ttaaatgcag tgactattaa agattctttt      2040
     ccactgccaa ggatcgacaa tattttggac tgtttaaagg ggaattcatg gttctgtact      2100
     attgacttaa aaagtggata ttggcaggta agcctagatc ctaaagatcg tgaaaaaact      2160
     gcgttttcgg ttggaaacgg tttgtggcag ttcacagtaa tgcctttcgg tctttgcaac      2220
     gcccctgcta cattcgaacg attaatggaa aaagtattaa aaggtttaat ctcaaaggtt      2280
     tgctttgttt atttagacga tgtaattgtt ttcgggaaaa attttgaaga aatgttatgc      2340
     aatttgaaag aagttttttg tcgcttaaag aatgctaatt tgaaagtaaa tccaagtaaa      2400
     tgtaattttc ttaagaaaga agttaaatat cttggtcatg ttatttctgc tgagggggtt      2460
     gcaactgacc ctgagaaaat ttcttctgtg agagattggc cacttcccaa aaatcgaaag      2520
     caggttagaa gctttcttgg tttttgttct tattatagga aatttgttaa aggttttgct      2580
     attgtggcaa agcctttgta taatttgacg gaagaaaatc gtaaatttct ttggtcttct      2640
     gaatgtcaag tagcttttga gaatttgaaa cgagttttaa catgtcctcc gattttatct      2700
     tttccttcgg gagaaggaca atttattttg gacactgatg cctcaaatca tggcattggg      2760
     gcggtacttt ctcaatttca ggaaggagaa gaaaaagtca ttgcttattt cagccgaatt      2820
     tttaataaag cagagcggaa ttattgtgta actcggcggg agcttctcgc tgttgtggat      2880
     tcagtgaagt ttttccatca ttatctctac ggacggaagt ttttggtaag gacagatcat      2940
     gtttctcttc gctggttgat gtctttccgg aatttggaag gacaactagc aagatggatg      3000
     gaacgtctac aacaatatga ctttgatgtc ctttatcgta gaggaaagat tcacaataat      3060
     gccgacggac tttctagacg tccatgtctg gagactttat gccggtattg cataaaagta      3120
     gaatctaatg aagaatcttc aaaggaagaa atttttggac gtttggtctt ttctagtgag      3180
     aattttcaag agtggcgtgc agctcaactc caagatgcag ttgtttctaa aattattcat      3240
     ttcaaggagg ccggaactcg tccagattgg caggagattg cttctggtga tccttctttg      3300
     aaaatctatt ggtcttattg ggatactcta ttgctgatcg atggagttct tcataagaag      3360
     tggatttccc cgaatttgca aaggaatatc tttcaaattg tggttcctcg tcaaagaata      3420
     catgaaatct taaaagaagc tcatgattct ccctcagggg gacattttgg tgtgaataag      3480
     acactacaga aagttcgaaa acgtttttat tgggtctcaa gcaagagaga tgtagagaat      3540
     tggtgtgctt cttgtaaaga atgtgttgct aaaaaaggac ctctaggaaa aggaaaatct      3600
     cctatggaaa tctataatgt gggagctcct tttgaaagga tacaagtgga tattcttggt      3660
     cctttaccaa cttcttcttc tgggaataaa taccttttgg tggtagtgga ttgtttctcc      3720
     aaatggccag aggctgtccc tttaaagaat aaaagggcca gcactgtcgc gagatcgctt      3780
     gtggatcagg tgttttcacg tcatggaatt cccttggaat tacatacaga ccaaggaaga      3840
     aattttgaat gtcatctttt taaggagatg actttacttc tcggaataag gaagtcacga      3900
     acaactcctc ttcatcctca atcggacgga caagtcgagc gtcaacatcg ctcgatcttg      3960
     aattatttgg caaagtttat ttcggaaaat caaaaggatt gggatcgttg gatttcatta      4020
     tatcttttag cttatcgttc ttcgaaacaa gaagctattg gaatgtctcc tgctgaaatg      4080
     tatttgggac aagatcttcg tttacctctg gatctgctta gaggagtttc cccttctacg      4140
     aaggaggaga aggatagtgc ggattttgtt tccaagttaa gacagagact agattccatt      4200
     catcatttcg ctcgacaacg tctttcgatt agttcaaaga atgccaaatt ttggtatgat      4260
     caacgagcaa ggcgaaaaaa ctttgagcct ggacagcaag tttggtttta taatcctcgg      4320
     cggattccag gaagagcacc caagttgcag agtccttggg aaggaccatg ggaagttatt      4380
     aggaaaataa gtgaggtttt atattgtata caaaaatgtc ctcgttcaaa aaataaaatc      4440
     gtgcatgcta atcgtttagc tccttacgta gaaagaaggg gggagacgac ataaatccga      4500
     gcccgaatgt caagggattg ttttcttttg attgagtacg ttgggacgca actatcgttt      4560
     ttgcttaaag aaaaaaaaaa gttctttccg tttttttttg tgtgtgtgtt cttgttctgc      4620
     ttgttttgtt ttattttcag taattttgct gagaggtgcg gacgcatgag ggctgcttct      4680
     cgaggtgagg aggaaagttt ttttttaaga agactgcctc gcccacggtt ttttgaccac      4740
     ggtttttccg tgggacattg ggcaaatgcc gaggcagggg gcagggagct cttagagcgt      4800
     tgggtccgtg gaagtaaatt ccccccctga tcccgaaaaa agaaacgaga agcgcacaag      4860
     atcgggcgaa gaggaagctt cacggcagga gaggagcacg gggacggaaa agggagccgg      4920
     cgcagaaaaa ttccgcgtgg gagtctggct aactctgcga ggaagagtgc ccggagaagc      4980
     ccttactggg agggtcgtct cggttggacg tggtccgatt aaggacaagg aaatcgtcct      5040
     ggaagccgat ggggccttct tgaagtaaca ggaaaactgc tccccggatt gtcgggacga      5100
     caatcttgaa gagggggagc ag                                               5122
//
ID   Gypsy-19_MoPha-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1183-1183 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 224 BP; 46 A; 54 C; 52 G; 72 T; 0 other;
     tgttacgagc gtcgcccggt atactccgcg actgcgactc agctgttccg aagccgatcg        60
     atatattgat tttaccaaga gcgttgtcaa ttgtcatgct cttggtaacg tttgtcaaca       120
     acgagtctta tctcggtctc gagccttgtc ggacgcacta ataaaagctg cttggttttt       180
     ttgagtttaa aagtgtcttt catttccgcg gcgcgctcgt taca                        224
//
ID   Gypsy-19_MSe-I repbase;    DNA;    INV; 4133 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4133
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 896-896 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..990
FT                 /product="Gypsy-19_MSe-I_1p"
FT                 /note="retropepsin (fragment)."
FT                 /translation="MATFGILSSFDHSIQEWKAYKSRLSQWFIANDIDEKS
FT                 DATGKRRAILLSALTEATYKLASDLALPKDLQDVPYEDIIKILDDHFTPKK
FT                 CGFSERQKFYSSVQQQGETHQQWAARLRGLTADCGFTNVEEILRDRFVLGM
FT                 LAGPEKEKLFSHDMKSLTLAKAVQVAGSIRSAQAGAAATAVPERTTPQVFQ
FT                 IKRREGDGNGTPHTGKEKCSVCGRSNHNSTQCRFINYKCKKCFKKGHLRNV
FT                 CKEIKYMGVGDVNEDDDDDGKLLNIRSLRGEPMTEVVIIGGIELRFEVDTG
FT                 SAVTVINDEKKHIVNISVTYHCQIP"
FT   CDS           939..4064
FT                 /product="Gypsy-19_MSe-I_2p"
FT                 /note="retropepsin (fragment), reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="REKTYRQYFSNIPLSNTVKKLLSYTGNVMKCSGVINV
FT                 PIEYDGKQLPIDIYIIRDGGPPLLGRDFLSAFQLQLNSCNFINNSKPDVXN
FT                 LQKRFPRVFSDKLGKFNKYEIKLRLKNDAKPIYFKARPIAFALRNKVDNEI
FT                 DRLVSLGILKPVEHAEYASPIVPVLKRDGSVRICADYSVSINKQLLVEQYP
FT                 LPTVNELFAKLYGGQQFSKLDLSMAYNQFVLDKESQCITCINTHRGLFVYT
FT                 RMVFGLSSAPAIFQRAMESILSGVDGVLCLLDDVLITADNSKLHLERLHIV
FT                 LQRLQDAGLILQKDKCEFFKDEINYLGYVINKNGLKKSPDKVKAILSAPVP
FT                 DNVNKLQSFLGLVNYYRNFVPDASSILSPLYELLKKGIKWTWSKSHNEAFC
FT                 KIKKILSSDKVLAHYNPQSKLILTVDASPNGLGAVLSQVGEDGAERPLSFA
FT                 SRTLNSAEKRYAQIQKEATAIVFGVKRFHQYLYGRANPFILRTDHKPLVTI
FT                 FGPHKGIPEVSANRLQRYAIFLNAYNYVIEYIRSADNCADYLSRASLPEVG
FT                 DGGGQEHDPAASAAVPAAVDDRAAYVNFVFEGNLPITLDQLREHTRKDITL
FT                 CKVIQYVLQGWPRKIDNIGLKPYHKCRLQLAFENGCLMKGHKVVIPQALQS
FT                 TVLNELHHSHLGIVKTKAEARSRFWFPNIDNALEKMISACNICIQLRPTPP
FT                 RAPLATWQFPPKIFYRVHLDFLGPINNRMYLIIVDAYSKWVEVYDTSNACT
FT                 TSVVIEKLCEFMSRFGVPHTIVSDNGLAFTSQEFQQHCLLNGITHITSPAY
FT                 HPASNGQAESYVKIIKKGLRTSLLSSDNQKTSKLNLLKYLFHYRNSVHSVT
FT                 GLSPAQIVYGENLRSRLDLLNPKPVRPSSSSITSLTDRVKQQQCSQNKYYG
FT                 GKNKQCYSVNDKVLYKKYFNGNKFVWCKGIVVKRLGKVLYLIKDVVHLKLL
FT                 KKHKNQIILFRGDQVAQSYDYMDGDNYDESEQCATVAPNSPPTVREEEPRP
FT                 EDVDTRSLLSSPSTEVPPSRSTVRLLRPIPRVNYKV"
XX
SQ   Sequence 4133 BP; 1305 A; 800 C; 898 G; 1127 T; 3 other;
     gtggcgacga gtacccacac aaaaaaggaa gaaaaaatca tggctacttt tggcattttg        60
     tctagttttg atcattccat acaagaatgg aaagcgtata aaagtagact atcacagtgg       120
     tttatcgcga atgatatcga cgagaaatct gatgcgacgg gaaaaagacg agcaattttg       180
     ctgagcgcac tcacggaagc cacctacaaa ttggcttcag acctcgcctt acctaaggat       240
     ctacaagacg ttccttatga agacataatc aagatacttg atgatcactt tacacccaaa       300
     aagtgcgggt ttagtgagcg gcaaaagttt tactcstcwg tacaacaaca gggtgaaaca       360
     catcagcagt gggcagcgcg attgcgggga cttactgctg actgcggatt caccaacgtg       420
     gaggaaatac tgcgcgatcg atttgtcttg gggatgctgg ctggacccga aaaggagaaa       480
     ttgtttagcc acgacatgaa atccttaaca ttggcgaagg cagtacaagt agctgggagc       540
     atacggtctg cacaggctgg tgccgcggcc acagccgttc ccgagcgcac gacgccacag       600
     gtgttccaga tcaagcgccg cgagggcgac ggcaacggaa cacctcatac gggaaaagaa       660
     aagtgttcag tgtgcggtcg ttctaatcat aattctaccc agtgccggtt tattaactat       720
     aaatgcaaga agtgttttaa aaaaggtcat ttacgtaatg tgtgcaaaga aattaaatat       780
     atgggggtag gagatgtgaa tgaggacgat gacgatgacg gtaagttact gaacattcgc       840
     tcgctgcgcg gagaacctat gacggaggtt gtaatcatag gcggcattga gttaagattt       900
     gaagttgaca caggatcggc cgtgacagtt attaatgacg agaaaaaaca tatcgtcaat       960
     atttcagtaa cataccattg tcaaataccg taaagaaatt attatcgtat acaggtaatg      1020
     tcatgaaatg ttcgggggta ataaatgttc ccatagaata cgatggaaag caacttccca      1080
     ttgacattta cataatacga gacgggggtc cgcctttgct gggccgtgat tttctcagtg      1140
     cttttcaatt acaactcaat tcttgtaatt ttattaataa ttccaaaccc gacgttakta      1200
     atttacaaaa acgatttcct cgggtatttt cagacaaact aggtaagttt aacaaatacg      1260
     aaataaaact gagattaaaa aacgacgcta aacctattta ttttaaggca cgcccgatag      1320
     ccttcgcatt acgtaacaaa gtagataacg aaatagatcg cttagtaagt ttaggtatcc      1380
     tgaaaccggt cgaacacgca gaatatgcgt cgcctattgt tccggtacta aaacgcgacg      1440
     ggtccgtcag aatatgcgcc gattactccg tgtcaataaa taaacaactt ttggtagaac      1500
     aatatccatt gcctactgtt aatgagttat tcgccaagtt gtatggaggc caacaattct      1560
     ccaagttaga cctctctatg gcttataatc agtttgtatt agacaaagaa tcacagtgta      1620
     taacttgtat aaatacacac cggggtcttt ttgtatacac gcgtatggta ttcggccttt      1680
     caagtgcgcc ggcaatcttt caacgggcta tggagtcgat tttatcgggt gttgacggcg      1740
     tgttatgttt attggacgac gtcttaatta cagccgacaa cagcaaattg catttagaaa      1800
     gactccacat tgttctgcaa agattacaag acgcgggact cattttacaa aaagataagt      1860
     gtgagttctt taaagatgaa attaattatt taggatatgt aattaataaa aatgggttaa      1920
     aaaagtcacc ggataaggtt aaagcaattt taagcgctcc ggtaccggat aatgtaaata      1980
     agttacaatc ttttttaggc ctggttaatt attacagaaa ttttgttccc gacgcttcca      2040
     gtattttaag tcctttatat gagttattaa aaaagggtat caaatggact tggagtaaaa      2100
     gccataacga agcattctgt aaaataaaaa aaatattatc atcggacaaa gttcttgcac      2160
     attacaatcc tcagtctaaa ctaattttaa cagtagatgc ctcgccaaat ggattagggg      2220
     cagtattgtc tcaagtaggg gaagacggcg cggaaaggcc attatcattt gcatcgcgta      2280
     ccttaaattc ggcagaaaag cgctatgcgc agatacaaaa agaggcaact gcgatagttt      2340
     tcggcgtgaa acgattccac caatatttat atgggcgggc aaatcctttt atattgcgca      2400
     ccgatcacaa gccacttgtc actatatttg gaccgcacaa aggtattccc gaggtatcgg      2460
     caaacaggct gcaaagatat gcaatttttc ttaatgcata taattatgtt atcgagtaca      2520
     ttcgtagtgc cgataactgt gcggactatt tgtctcgcgc gagcctcccc gaagtcggtg      2580
     acggtggagg gcaagagcat gatccggccg cctcggccgc tgtgcccgcc gctgtagacg      2640
     accgagcagc atacgtaaac tttgtttttg agggtaattt gccgataacc ttagatcaat      2700
     tacgcgaaca tacgcgaaag gatattactt tatgtaaagt tatacaatac gttttacagg      2760
     gctggcctag gaaaatagat aatataggtt taaaacctta tcataaatgt agacttcagt      2820
     tggcttttga aaatgggtgc cttatgaagg gtcacaaagt tgtcataccc caagctctgc      2880
     agagtactgt attaaatgaa ttacaccact ctcatctggg tatagtaaaa acaaaagcag      2940
     aggcgcgttc acgattttgg ttcccgaaca tagataatgc actggaaaaa atgataagtg      3000
     catgcaacat ttgcattcaa ctcagaccaa caccgccgcg tgcgcccctg gcaacatggc      3060
     aattcccacc gaaaatattc tatagggtac atctagattt tttaggacct attaataacc      3120
     ggatgtattt aattattgta gacgcatact ccaagtgggt agaagtatac gacacatcca      3180
     atgcatgtac tacgagtgtt gtaattgaaa aactttgcga atttatgtct cgatttgggg      3240
     tcccccacac tatagtaagt gacaatggat tagcttttac atcacaagaa ttccaacagc      3300
     attgcttact caatggtata actcatataa catcgccggc ttatcaccct gcgagtaacg      3360
     ggcaagcaga aagctatgtg aaaataatta agaaaggcct tcgaaccagt ttactgtcat      3420
     cggataatca aaaaaccagt aaattgaatt tgttaaaata cttatttcac tatcgtaatt      3480
     cggtacactc tgtcacaggc ctttctccgg ctcaaatagt atatggcgaa aatcttaggt      3540
     cacgtttaga tttacttaat cctaagcccg tgcggccgtc ctcgtcgtca atcacatctc      3600
     ttactgaccg tgttaaacaa caacagtgct cgcagaataa gtactatggc ggtaaaaata      3660
     aacagtgtta tagtgttaat gacaaagttt tatacaaaaa atattttaat ggtaataagt      3720
     ttgtttggtg caaaggaatt gttgtaaaaa gactcggaaa agttttatat ttaattaaag      3780
     atgtagtgca tttaaagtta ttaaaaaagc acaaaaacca aattattttg ttccgaggcg      3840
     atcaggttgc ccaaagttat gactacatgg atggcgataa ctacgatgaa agtgagcagt      3900
     gcgccaccgt cgcgcctaac tcgcccccga ctgtgaggga agaggaaccg aggccggagg      3960
     acgtggacac gcggtcattg ttgtcgtcac cttcaacaga ggtgcctccc tcaaggagta      4020
     ctgttagact attgcgaccg attcctagag ttaattataa ggtgtaaaat tgttattttt      4080
     aaaagtatag tattagtatt tctttgtatt gtgtcctttt gaaggggaga agg             4133
//
ID   Gypsy-19_MSe-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-120
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 945-945 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 120 BP; 28 A; 24 C; 27 G; 41 T; 0 other;
     tgttatatat gtagttataa gtatagcgtg ctgcgtacac gcccttgtcg atgggctaat        60
     aaattagtgc gttacgagcc agcgtttgtt tcactcgtgt cccgtattgc atacttaaca       120
//
ID   Gypsy-19_OrIn-I repbase;    DNA;    INV; 5655 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5655
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1560-1560 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..4721
FT                 /product="Gypsy-19_OrIn-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MEELLARFVTAIEDLRIPRAPRVEADPDEIPRSLLTI
FT                 IEPWNPDKSETVPILQFFETFEDHTGRLSNAAKAKLLQIKMKGKAQTFIYD
FT                 NPELKEGDTPYTTLKAGLINHFKREDPIEATRKLWAAKIKEGENLRDFAER
FT                 VKSLARKALAIQEGTVPNEDVRNNINKYATKAFIRGIPKITPYLASSNHAN
FT                 LDEALKRAEELDEILNENNKTNDEWEICGMNASEPNKPSSCYNCGKAGHFA
FT                 YRCPERKHERVVGNHPPNKSINEPRKACSYCGEWNHFPINCTLLRQKPTVI
FT                 CGFCGIRGHEESNCRTKKRNQIRVCDYCGIRGHEENDCRFLKQANIPPTAN
FT                 GDIGPRNYPENRANANLNVCVKDKQQTDMKISKREDPNTIEGPEAILAIEA
FT                 TLKINLFLNYVETTMVVDTGAQVSVLALPIPGVRINKTSISVRAANGCKIK
FT                 LLGTQNLAVKWENCVVEHEFLVMDEHNQGMNLLGLDLMRKLPIRISTGARE
FT                 VYPLRAINVSEDDDLLGMDSEIEKGEEDTNTLIEVLTEHVDPRNRELLSNL
FT                 LQELAEVFKNPQPEGCMLGITHHIDTGNAEPVRRKSYSIPFALREIAETQI
FT                 KKMLDDKVIQPSASPWSSPIVLVRKKADPTTKITDYRLCTDYRGLNQVTKR
FT                 DAYPVPNINDTLRLLGGNKFFTTLDLTSGYNQILINPADREKTAFTALGHQ
FT                 YEYLKMGFGLVNAGATFQRAMNIALDGLLNDICLAYLDDIIVLGKNETDHL
FT                 TNIRTVLRRLIDTGLKVKLTKCNFMKEEVNYLGHVIGANGIKMDPQKTHAV
FT                 LNYPRPKDVKGVKAFLGLASYYRKFIKNFAEISAPIGRLLKKNTKFSWGES
FT                 EENSFNILKNKLSNDVTLAYPDFSEQFLLTTDASLTGMGGVLSQIIEGEER
FT                 PVGFASRKLSDSESKYSTTERELLAVVWAITHFQQYLLGKKFVLYTDHAAL
FT                 SSALKLRDPTSRINRWVLKLSQYDFETRYRPGKTIQNADGLSRAHVSAIET
FT                 LTYPRELLKIGQEIDPCTKELILKNGFSEKDGIWGKETEDGVNSSWIPLIP
FT                 ECLTTWIIKNCHDSLWAGHPGIDGTIKLVRRHGYWPSMRNDIKAHVENCRQ
FT                 CQQRNSPINQKVPLQKPMLPVRPLEIVGMDIVGPIEDKNGYKRYILTMVDH
FT                 FSKYALAVPTSNIESEHLIRLIMDHFLIKFGIPEKIITDQGRNFTSEKFRK
FT                 FCTTMGIQKLQTTAYHPQSNGVTERFHRTLEDIIAKLSKSKGQDWENLLPY
FT                 ALGAYHNSVHSSTGQTPNLLFLGREIITPLDGHIGMKGHPDFMDIIRMAET
FT                 GRISAEKVIQQQWERRNRVANKNRTPRELDEGDIVYVKDRPRQGCYKKFGP
FT                 RWLGPWRIEEKLNPVNYIIKDPTGKLNTYHIERLKLAKTRERIPELEDSKV
FT                 EPAEMAETERKSELDLSISSSDWEVIEENIKNKSEKFPTCQETDNSRDESS
FT                 DDGPSTDFESLSGSPQNPQKTENKGYNLRPRKIPDYRKLRRSD"
XX
SQ   Sequence 5655 BP; 2068 A; 1270 C; 1155 G; 1162 T; 0 other;
     atggtggcca gcggtgggat ttgttaaaat ttatttaaag tacccagcca agcaaccaag        60
     ggcaaatgaa caaagattgg cattctatta gcacgactta ttaggcatga cttagtaagg       120
     tagaaaaatt gtcaagagtt ttgagaggga ggaaattgat aaattcacga ataaatagcc       180
     aaccaagata aatcaaaatg gaagagttat tagctagatt tgtaacagct atagaggatc       240
     ttagaattcc ccgagcccca cgagtagaag ccgacccaga cgaaataccc agaagcttac       300
     taaccataat cgaaccatgg aatcccgaca aatcagaaac agtcccgatc ttacaattct       360
     tcgaaacgtt cgaagaccac acaggccgac tgtcgaacgc agcaaaagcc aaactactcc       420
     agatcaaaat gaaagggaaa gcccaaactt tcatatatga caaccccgaa ttgaaagaag       480
     gtgacacccc atataccacg cttaaagcgg gactaataaa ccacttcaaa agagaagacc       540
     cgatagaagc caccaggaaa ttatgggcgg ccaaaatcaa agaaggtgaa aacctaagag       600
     atttcgcgga acgagtaaaa tcattagcta ggaaagcact cgccatccag gaagggacag       660
     tccctaatga ggatgtgaga aacaacatta ataaatacgc cacgaaagcg ttcataagag       720
     gcatccccaa aataacccca tatctagcgt ccagcaacca cgcaaactta gatgaagcac       780
     tcaagagagc cgaagaattg gacgaaatcc ttaacgaaaa caacaaaacc aacgatgaat       840
     gggaaatatg cggaatgaac gcatctgagc caaataaacc ctccagttgc tacaattgcg       900
     gaaaggcagg ccacttcgcg tacagatgcc ctgaaagaaa gcacgagagg gtcgtaggaa       960
     accaccctcc aaataagtcc atcaacgaac caagaaaggc atgctcgtat tgcggggaat      1020
     ggaatcattt cccaatcaac tgcacccttc ttaggcaaaa acccacagtt atttgcggtt      1080
     tttgcggaat tcgcggtcac gaagaaagta actgtcgaac taaaaaacga aaccagatca      1140
     gagtttgtga ctattgcgga ataagaggcc acgaagaaaa tgactgccga ttcttaaaac      1200
     aagcaaacat acctcctacc gcgaacggag atatcggtcc ccgaaactac cctgaaaata      1260
     gagcaaacgc caacttaaac gtttgcgtga aggacaaaca gcagaccgac atgaagatca      1320
     gcaaaagaga ggatccaaac acaattgagg gacccgaagc gattctagcc atagaagcca      1380
     ctttaaaaat taatctattc ctaaactacg tagaaacaac catggtagtg gacacgggag      1440
     ctcaggtctc agtattggca ctccctattc ccggggttag aataaacaaa acgtcaatta      1500
     gcgtaagagc cgcaaacgga tgtaagataa aacttctcgg cacccaaaat ctagccgtga      1560
     aatgggaaaa ttgtgttgtc gagcacgaat tccttgtcat ggacgagcat aatcaaggca      1620
     tgaatctgtt gggattagat ctcatgagga aactccccat acgcatcagt acaggagcta      1680
     gggaagtcta cccattaaga gccatcaacg taagcgaaga cgatgactta ctaggcatgg      1740
     atagcgagat agagaaagga gaagaggaca cgaacacctt gatagaagtc ctaaccgagc      1800
     acgttgatcc cagaaaccgg gaacttttat cgaatctact gcaagaatta gcagaggttt      1860
     ttaaaaaccc acagcccgaa ggatgcatgt taggtatcac gcaccatatt gatacgggaa      1920
     atgcggaacc ggtcaggaga aagtcataca gcatcccttt cgcgttacga gaaatagcgg      1980
     aaacgcagat aaaaaaaatg cttgatgaca aagtaataca accttcggct tccccatggt      2040
     cctcacccat agtgctggta agaaaaaagg ccgaccccac aaccaaaatc acagattaca      2100
     gactctgtac ggattatcga ggattaaacc aggtcaccaa gcgagacgct tatcccgtcc      2160
     caaacatcaa tgacacactt cgactgctag gaggaaacaa gttttttaca acacttgatt      2220
     taacttccgg ttacaatcaa attctcataa accccgctga ccgagaaaag acggctttta      2280
     cggcgttagg acaccagtac gaatacctta aaatgggttt cgggttagta aacgccggcg      2340
     ccacattcca acgggctatg aacattgcct tagatggctt actaaacgat atttgcttgg      2400
     cctatctaga cgacataatt gtcctcggga aaaatgagac agaccacctg acaaatatcc      2460
     gcacggtttt acgacgtctc atcgacaccg gcttgaaggt aaaactaaca aaatgcaact      2520
     tcatgaaaga agaagtcaat tatttgggac acgtcatcgg agcgaacggg atcaagatgg      2580
     acccccaaaa aactcacgca gtattgaatt acccacggcc aaaagatgta aaaggtgtca      2640
     aagcattcct tggcttagca agttattatc gaaagttcat taaaaacttc gcggaaatca      2700
     gcgcgccaat aggacggcta ttgaagaaaa acactaaatt tagttgggga gaaagcgaag      2760
     aaaattcttt caacatttta aagaacaaac tttcaaacga tgtgaccctc gcctatccag      2820
     atttcagcga acagtttctt ctcaccaccg acgcatccct caccgggatg ggtggagtac      2880
     tctcacaaat aattgaaggg gaagaaagac ccgtaggatt cgcaagcaga aaactcagcg      2940
     attccgagag taaatactcc acaacagaac gagaattact cgccgtagta tgggctataa      3000
     cacatttcca acagtaccta ctagggaaga aattcgttct gtacacggat catgctgcgc      3060
     tctcgtcagc acttaaattg agggacccca cctccagaat taacagatgg gtactcaagc      3120
     tcagtcagta cgatttcgaa acaagataca gaccagggaa aaccatacaa aacgcggatg      3180
     gcttgagtcg agcccatgtt tcagccatag agacattaac atatccgagg gagttactaa      3240
     aaatcggaca agaaatagac ccttgcacca aagagctaat tcttaaaaac gggttctccg      3300
     agaaagacgg catatgggga aaagaaaccg aagacggagt aaactccagc tggatacccc      3360
     taatccccga gtgtctaaca acatggatca taaagaactg ccatgacagc ctttgggccg      3420
     gacatcccgg catagacgga actattaaac ttgtaagaag acacggctac tggccctcaa      3480
     tgagaaacga catcaaagca cacgtagaga attgcagaca gtgtcaacaa aggaattcgc      3540
     ccataaacca gaaagtgccg ttgcagaaac ctatgcttcc cgtcagacca ctagaaattg      3600
     taggtatgga catcgttggg ccgatcgaag ataaaaacgg ttacaaacga tacattctga      3660
     ccatggtcga ccattttagt aaatacgctc tagcagtacc cacgagtaac atagaatcag      3720
     aacatttaat acgccttatc atggatcatt tcctcatcaa gttcggtatc ccagaaaaaa      3780
     taatcaccga ccagggccgt aatttcactt cggaaaaatt caggaaattc tgtacaacta      3840
     tgggaatcca aaaactccaa accacagcat atcacccgca aagtaacggc gtgacggaac      3900
     ggttccacag aaccttagag gatatcattg ccaaattgtc aaaaagcaaa ggacaagact      3960
     gggagaatct tctcccctac gcattagggg cttatcacaa cagcgtgcat tctagcaccg      4020
     gacagacccc caacctactt ttcttaggac gcgaaataat caccccgcta gacggacaca      4080
     tcggcatgaa aggccacccg gatttcatgg atataatccg tatggcagaa accggaagga      4140
     tctccgccga aaaggtgata caacaacagt gggagcgaag aaacagggtt gccaacaaaa      4200
     acaggacacc tagagagctg gacgaaggag atatagtcta cgtaaaagat cggccacgac      4260
     aaggttgcta caaaaaattc gggccacgat ggctaggccc ctggcgcatc gaagaaaaat      4320
     tgaatcccgt gaactatata atcaaagacc caacaggaaa gctaaataca tatcatattg      4380
     aacgattaaa actcgcaaaa acaagagaaa gaatccccga attagaagat tccaaagttg      4440
     agcctgccga aatggccgaa acagaaagaa aatctgaact agacctatca atatcatcat      4500
     cggattggga ggtaatcgaa gaaaacatca aaaataaatc tgaaaaattt cctacatgcc      4560
     aagaaacgga caactcaaga gacgagagtt ctgacgatgg cccctccaca gattttgaaa      4620
     gtctatcggg atccccgcaa aacccacaaa aaacggaaaa caaaggctat aatttacgtc      4680
     cccggaaaat accggactac cggaaactcc ggagatcaga ctaacagcca gaaaacaaaa      4740
     acgaaattca aacattcaaa cccgaattag acaccctacc accctgcccc gacaagaaac      4800
     gacaagaaag aaatgtcgag ataagacgaa gtaacctatt cactcagtta cgataataac      4860
     aacgtgaacg aagtgaatac aacggaagtc taacaatgaa tcctgacgaa gaagaaaagc      4920
     cgtacaatcc gtacgatttc gcaacgtccc ccagccatgt aatgaacgag aagacgacga      4980
     cgtactcata atatcggcca gcccaatcga caccccgaga cacgagaccc cggcctcgtc      5040
     gaataaacga aaatttaatg acacagaggc ggaacccgcg aagaaaacaa agactcgagg      5100
     gagatgcagg agctgtagga gaagaacgag aaacaccgac aaaacattct gtcccgaatg      5160
     ctcgaaggaa agggagaaaa cgattcaccc gaacccatgt accgacaaga cggacccttt      5220
     gggactaaaa aaaaatttga gaaaagaata accccatttt acgaataggc aaacggcaac      5280
     tactctgaat tttgtaagaa caactatgat ttctttgatt tttttaatat atttttacta      5340
     ctctgaattt tgtgagaaca actttgattt gttttgaatt tttttttttt ttgtttgtat      5400
     tttttactac tctgaatttt gtaagaacaa ctttgatttt ttttatcgca atcaacgcga      5460
     cagccaatga aattcatttt ttttgtgtaa ttctataaat gtgattgaat atatatatgt      5520
     ccatattata ttgtctctat caaaatatat acctttctat gtcaaaaaaa aaaaaaaaaa      5580
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaattttttt ttttttcttc      5640
     aaggagggag ggtag                                                       5655
//
ID   Gypsy-19_OrIn-LTR repbase;    DNA;    INV; 1366 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-1366
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1526-1526 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1366 BP; 514 A; 303 C; 237 G; 311 T; 1 other;
     tgtaacggat agatatccca aagaagcata ggctagtata agcgccgaaa gggccatcta        60
     gtaggaaaag catacattag tataagcgcc gaaagggcca tctagtagga aamcagaaac       120
     aacagaaaca aataggaaac aaaaggaata aatcaaactc agtcaacaaa aggaataaag       180
     aaacccaatt aacgaaaaaa aaaaaagtaa gaaaggaaac agatcgaatc aagagacata       240
     aaaaaatagt tcaagaaaag aacagacaaa ttaaaagaag aatcaaagcc gcggagctcc       300
     cgcggaaaag aagaattcaa ccagcataca tgaaaaacag taaaattaag aaaaaaaaga       360
     agaatcctcc cacctcctta ccgtatccca actccccaag gtaaagtgcg gcctagctgt       420
     ttcgccatac cttatcaacc tcactaagag taaagtgcgg cctagctgtt tcgccatact       480
     cttcccactt cctttccgta tccccaaggt aaagagcggc ctagctgttt cgccatacct       540
     tatctacctc actaagagta aagtgcggcc tagctgtctc gccatactct tcccacttcc       600
     tttccgtacc cccaaggtaa agtgcggcac agttgtttcg ccatacctaa gccctaatac       660
     tccgcggaca gtatccccta aaaaaacccc gccatatgca atcagacgtc agtctgctat       720
     acttgacgac tgggataaaa ggataactgc gcccaagaga aggctcttca aagattctct       780
     gtcatctgga cgtctcctta ttggattgta ttatctatga atcatcgccc aaggacagcc       840
     ggaaaaataa aggattgcgt gccgaatgct tcgttatttc tcttccgcgc tgtacccacc       900
     aaggattccg tcggattgaa atccaccaac atagaacgtc agctaaaagg tcagagatgt       960
     cttaaaatta taacacaagg attcaaacag taaactcatt agtaaattaa attcatgaag      1020
     gaaagaaatc atttgagttc ctttattatc tagtaaattt gtaaagccat gacagacctt      1080
     aataaagaat tcatttgcgg gaaaatcacg gctaaataag taacaaaatc agtaaagttt      1140
     aagaaaagaa atatactaat agtgtcgttc aaacgatttg cctaaagaaa cattaataaa      1200
     aacatctttc tatgtctctc cttgttcatt tacaccctgg ttcatgcttg gtagaccttc      1260
     gaagagatag cctttaataa aaccacgtct accaacctaa tcatataaac gcaaagtcaa      1320
     aagtaagaat agacaaaaaa aaagtcacga ttacaaatcg gttaca                     1366
//
ID   Gypsy-19_PBa-I repbase;    DNA;    INV; 7521 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7521
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 709-709 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..1663
FT                 /product="Gypsy-19_PBa-I_1p"
FT                 /translation="MLRTPVKPKESDMNTRNNPKKPLTEEELDRIRAAQEE
FT                 RAAQLQADADALEKERERVRAENEAVNREKDRIRLGHDAVNREKERVRAEN
FT                 AALQRDRADAEEGRAALREMSDMMASLRAELNSMRREMDVRRDPPLRSPSL
FT                 PPGQPFGETPPLFGDHNESGAEPPAVPKITYREATEYVPHFDGYNIPLSKF
FT                 LGACRQARDILPPHYERPLTRLLITKLRGHAHSAVADEPCESVTQLSDLLN
FT                 SAFGSVKSVAQYRGELTAVHLRPNEHILDYIDRVKELRSAIRDGERRARGT
FT                 LNSAVTSEIDELTAHCFCEGLPTPYRLQLRPEHYREPFEAFAAAKMIAKRD
FT                 ELERQRYGLPARLGQPPRQTTDARRRSPEPDVGRNMRYRPTPPPERRQSPP
FT                 RYSDYRNRERNYQPHRLSEWTERRTEMRPAPRYDNRNPSGPRNGDRVTRNF
FT                 ETPRNDKWCRYCKNRGHEIEECRKRQYNNSRFNGPRNGQDPPRGMDAPRAD
FT                 PLRNARPVNTVETAREEAQTSESQS"
FT   CDS           5439..7397
FT                 /product="Gypsy-19_PBa-I_3p"
FT                 /translation="MGPFRLAALLILPACQALLGYDCGGNGLNITTLSLLD
FT                 IGSCNVERLEPRSTETYIQLMQSSDYDSVTALQCKLEIDRTIYYCGMHSHV
FT                 SIVTNGHKDYVKEIGHENCQRIHDTGTLNIGTAVVDRLKVNATNHRSITMA
FT                 GQTYTDGRCSGTQYSDGFGTWENVVVQATLKLTLKSFEASYKRTTGMIILP
FT                 TGTRCQAQLGSCIDYDGTETFWTLTPADSCHFNQYDVLYEGIATKLSPRDN
FT                 QTTPTVYTVTTKETTFALAKTTEFNLCGYQLYRTEHPKLIILETQKGKTFA
FT                 AKSRISVNNLDIFAYVNSKFVYVEKHVKHQLTRLYNDIMEQKCALERQILQ
FT                 NALSLSAIAPDEMAYRVMKSPGYTAVTAGEVIHIIQCVPVTCKLRHTETCY
FT                 NELPVTYKNATYFLLPRTRILTRKGTHKDCNELLPNMYQLNDAWYKLTTKP
FT                 SESLPPPVIQPLSTPRWKYVSPDALATSGIYSADDLDRLRDHIMFPVEKPS
FT                 TLNTIARGALGQNIPGGSISLANLLDEEALDKIAESAGKRIWKGFITFGSA
FT                 SAGVLAIFVIARMVKLIIDTIIHGYALHRIYGWSIHLLGAVWSSITNLLLH
FT                 MAKPTNQPDSPSIERLMPHQAADKPLPATAPQKEETEEHARSYSELRKYLK
FT                 EDIV"
FT   CDS           1738..5328
FT                 /product="Gypsy-19_PBa-I_2p"
FT                 /translation="MVDTGAAPNLIKKKHVHPSTPIVKNDTIYLTGITTGR
FT                 IETLGSITVQFRGHEINLHTVPDSFPIAQGGILGSDFLRDDATIDFAREIV
FT                 EWRGIKLPFRHSKKILIPARSRTTFYVNVANSEIETGYLPRLSVAEGVYLG
FT                 EAIVTNRGGRAYVQIVNTTESDQEIAVPTIPLGEIALIAPRPPRASRAVNC
FT                 VAASRPEEASRERDRTTLVRDLLRLDHLSDIEAEHVNALVRDHADLFQLPT
FT                 DPLGSTNATSHVIATTDNVPVNVKQYRFPPMHREEITKQVDKLLKDDIIEH
FT                 SNSPYNSPLWIVPKKPDSQGNRRWRMVIDFRALNEKTIGDAYPLPNITEIL
FT                 DQLGSAKYFSVFDLASGFHQIPMHESDAPKTAFSTPFGHYHFKRMPFGLKN
FT                 APATFQRLMDQVLTGLQGIELFVYLDDIVVYASSLREHEIKFKKLAERLRK
FT                 AGLRLQPDKCEFLRREVIYLGHIISEDGVKPDPKKIYAVENFPQPRTAKNI
FT                 KQFLGLAGYYRRFIPNFSRTAKPLTDLLKKEKQFEWGDAQKLAFHTLKAAL
FT                 CSEPLLQYPDFTKPFIVTTDASKFAIGGILSQGPLGKDLPIAYASRLLSPP
FT                 EQNYSTIEKELLGIVYCVNYFRPYLYGRKFRLVTDHKPLTWLHSVKDPTSR
FT                 LVRWRLKLAEHEYEVVYKAGKMNTNADALSRNPPVRMLPLAVTREQPTEIN
FT                 EDESESDESLFSTPVPREPGIPAAKENRESEVDANRNSKESGGHDDSIDCN
FT                 SEINLDSDPEQGSDASEDENLFDGDNAPYQMHHLRVKEIRDNFANRKDNLV
FT                 VFVDAQGEPCDLGARILSKQNLLPEACDVMGRGKIRRVGNKLVIALPVERN
FT                 VSSLTVLDSIREALKSLVDIIRELELQTISICKSDVNGVPFAKIDKAFRTA
FT                 LWDHNLGINICTNEIATPPVDERSRIIEEYHASAVGGHKGVTKTLARIKER
FT                 YTWPGMKEQINRYISNCQNCRLNKLTRIKVRQPMVLTDTPDRAFDKISMDI
FT                 MGPLPTTRSGNSYILTIQDLLTKHSAAIAIPGISAIDVADALVNEYICVHG
FT                 APKAILTDQGTHFLNSLMRCIARKFKIKQFKTTAYRPQSNGSIERSHHVLW
FT                 EYLKQFVDKDRNWDEILKLASFSYNTSVHEGTRFTPHELVYGHLARTPTSE
FT                 TVEFNDNNESYAEYYADLADKIGRAQAIARRNLDNAKI"
XX
SQ   Sequence 7521 BP; 2121 A; 2022 C; 1887 G; 1490 T; 1 other;
     tatttggtga cagcggtggg atatcgttaa tcgggagagt cgaacatatc ggcaaatctc        60
     accgacccac ccagcgttcg taccgtgatt atcgcacctt atgcttcgca ctccggtaaa       120
     acctaaagag agcgatatga atactcgcaa taaccctaag aaacctttga ccgaggagga       180
     gctcgatagg attcgcgccg cgcaagagga gcgcgccgca cagttgcaag ccgacgccga       240
     tgcgttagaa aaggaaagag agagagtccg cgcggagaat gaagcggtaa accgggagaa       300
     ggatagaatt aggctgggac acgacgcggt aaaccgagag aaggagcgag ttcgggcaga       360
     aaatgccgct ttgcagcggg accgcgccga tgccgaggaa ggccgagccg cgttacgcga       420
     gatgagcgat atgatggcgt cgttgcgcgc cgaattaaat agcatgcgac gcgaaatgga       480
     cgtacgccgc gacccaccgt tgcgaagccc cagcctaccg ccaggccagc cgttcggtga       540
     gacgccaccg ctattcgggg atcacaacga gtcgggcgcc gaaccgcccg ccgttccgaa       600
     gattacctac cgggaagcca ccgagtacgt gccgcacttc gacggttata atataccact       660
     gtccaagttc ctcggggcct gtaggcaagc tcgcgatatc cttcccccgc attacgaaag       720
     acccctcacg cgtctactta taaccaaact acggggtcac gcgcattccg cggtagccga       780
     cgaaccctgc gagtcagtta cacaactctc ggatctgctc aacagtgcct tcggttccgt       840
     caagagcgta gcgcaatatc gaggagagct gaccgccgta cacctccgtc ccaacgaaca       900
     tatcctagat tacatagacc gcgttaaaga gcttcgatct gcaatacgcg acggggaacg       960
     acgcgctcgc gggaccctga attctgcggt gaccagtgaa attgacgagc ttactgctca      1020
     ctgtttctgc gagggcctcc ccaccccgta ccggctacag ctgcggccgg agcattatcg      1080
     cgagcctttc gaagctttcg cagctgcaaa aatgatcgcg aagcgcgatg agctcgaacg      1140
     ccagcgttac gggctccccg cgcgactcgg acaaccgcca agacaaacga ccgatgcacg      1200
     ccgccgatca cccgagccgg acgtgggacg caacatgcgt tacagaccaa cgccccctcc      1260
     tgagaggcga cagtcgcccc cgcgatatag cgattacagg aaccgcgaac gaaattatca      1320
     gccacaccgc ctctccgagt ggaccgagcg ccgcaccgag atgcgaccag cgccgcgata      1380
     cgataacaga aacccatccg ggccgcggaa tggagaccgt gtcacgcgta acttcgaaac      1440
     gccgcgaaac gacaagtggt gtaggtactg taagaatcgc gggcatgaga tcgaagagtg      1500
     ccgcaaacga cagtataata acagtagatt taacgggccg agaaacggtc aggatccgcc      1560
     tcgcgggatg gacgcgccgc gtgcggatcc cctgagaaat gcgcgtccgg tgaacacggt      1620
     agaaacggct cgcgaggaag cacaaacatc cgagtcgcaa tcctaaatct acctgggccg      1680
     tctcacgccc cctccattct gctatccgtt agcggtttag cagaaccaac cgactttatg      1740
     gtcgacaccg gggccgcacc taaccttata aagaaaaaac acgtgcaccc gagcacgccc      1800
     atcgtcaaaa atgatacgat ctatctcaca gggataacga ccggcagaat cgagacctta      1860
     gggtcgataa ccgtccagtt ccggggtcac gagataaatt tgcacaccgt tcctgacagc      1920
     ttcccgatcg cgcagggagg aatcctagga tccgacttcc tccgcgatga cgccactatc      1980
     gatttcgctc gcgaaatagt cgagtggcgg gggatcaagc tacccttcag gcattcaaag      2040
     aaaattctaa ttcccgcacg atcgcggaca acgttttacg ttaacgtcgc taactctgaa      2100
     atcgagaccg gctacctccc tcgacttagc gtcgcggaag gagtctactt aggagaagct      2160
     atcgtgacta atagaggggg aagagcatat gtacaaatcg tgaatactac agaatcggat      2220
     caagagattg ccgtcccgac gattccctta ggggaaatcg ctttaatcgc gccgaggccg      2280
     ccacgggcaa gtcgcgccgt taattgcgtc gccgcatcga gaccggagga agcatcgcgt      2340
     gagcgcgata gaaccactct tgtcagggat ctgcttaggc tagatcatct tagcgacata      2400
     gaggcggaac atgttaatgc ccttgtgaga gaccatgccg acctctttca actccccact      2460
     gatccgttag gctccacaaa cgccacttcg catgttatag cgaccaccga caacgttcct      2520
     gtgaacgtaa aacaatatcg attcccgccg atgcacaggg aggaaatcac caagcaggtc      2580
     gataaattgc taaaagatga tatcatcgaa cattctaatt caccatataa ttcccccttg      2640
     tggatcgtgc ctaagaaacc cgactctcaa ggaaatcggc gttggcgtat ggtgatcgat      2700
     ttccgcgcat tgaacgaaaa aacgatagga gacgcgtacc ccctccctaa catcaccgag      2760
     atacttgacc agttagggag cgccaagtat ttcagtgtct ttgacctagc atctggtttc      2820
     catcagatac cgatgcatga gtcagacgcg ccgaaaacgg ctttctctac accctttggc      2880
     cattatcatt ttaagagaat gcctttcggg ctgaaaaatg ccccggcgac gtttcagcga      2940
     ctcatggatc aggtgctgac cgggttgcaa gggatagaat tgttcgtcta cctggacgac      3000
     atagtggtgt acgctagctc tctgcgcgag cacgaaatta agtttaaaaa attggccgaa      3060
     cgattgcgaa aagcagggct tcgcctacag ccggataaat gcgagtttct ccggagagaa      3120
     gtcatttacc tagggcacat aatcagtgag gacggagtga aacccgatcc caaaaaaatt      3180
     tacgccgtag aaaatttccc acagccgcgc acggcaaaga acattaaaca attcttgggg      3240
     ctcgctggtt attaccgccg gtttatcccg aatttttcca ggacggccaa gcctctgaca      3300
     gatttattaa agaaagaaaa acaattcgag tggggtgacg cacagaaact cgcattccat      3360
     acgctgaagg ccgccctctg ctctgaacca ttgctacaat atcccgactt tacgaaaccc      3420
     ttcattgtaa cgaccgacgc ctcgaaattt gccattggcg gtatcctgag tcagggaccg      3480
     ttgggcaaag atctaccgat agcttacgcc tctcgattgt tgagcccgcc cgaacagaac      3540
     tactcaacca tcgagaagga attgctagga atcgtgtatt gcgttaatta tttccggcct      3600
     tatttgtacg gtcgcaaatt tcgattagtt actgaccata agcctttaac gtggctccac      3660
     tctgttaagg acccgacgtc gcgtctggta cgatggcgtc taaagctcgc agaacacgag      3720
     tatgaagtag tatataaggc agggaaaatg aatactaacg cagacgcgct ctcgcgaaac      3780
     ccacccgtac gaatgcttcc tctcgcggtg actcgcgaac aaccgaccga aatcaatgag      3840
     gacgaaagcg aatccgacga gtctttgttc tcgacccccg taccgcgaga accggggatc      3900
     cccgctgcta aggaaaatag agaatcggaa gtggacgcta accgcaatag caaagagagt      3960
     ggcggccatg acgattcaat cgactgtaac tccgaaataa atcttgatag cgatcctgag      4020
     caaggaagcg atgcgtcgga agatgaaaac ctgttcgacg gcgacaatgc gccgtaccag      4080
     atgcatcatc tccgagtaaa agaaataaga gataacttcg cgaacagaaa agataacctg      4140
     gtagtgtttg ttgacgcaca aggagaacca tgcgacttag gggcgcgtat cttgagtaaa      4200
     cagaaccttt tgcccgaggc ttgcgacgtt atgggccgcg gcaagatccg acgcgtaggc      4260
     aataaactcg taatagcttt gcccgtcgag agaaatgttt cttcgcttac cgttctcgac      4320
     agcatcaggg aagcactaaa atccttggtg gatataatcc gggaattaga attacaaact      4380
     atttcgatct gcaaaagcga tgtgaatgga gtaccatttg ctaagataga caaagcgttc      4440
     cgcaccgctc tttgggatca taatctaggc ataaatattt gtaccaacga aatcgcgact      4500
     ccgcccgtag atgagagaag ccggataatc gaagagtacc acgcgtctgc cgtcggaggt      4560
     cacaagggcg tgacgaagac gctcgcgcga attaaggaaa ggtacacctg gcccggcatg      4620
     aaagaacaga taaaccgcta tatatcgaat tgccaaaatt gccggttaaa taagctaacg      4680
     cggataaaag tcagacagcc tatggtgctg acagatacgc ccgatcgagc cttcgataag      4740
     atatccatgg atatcatggg ccctctccct accacgcgct cgggcaattc atatattctc      4800
     acgatacagg atctcttgac caagcactca gccgccatcg cgatcccggg aatctccgcg      4860
     atcgacgttg cggatgcact cgttaacgaa tacatttgcg tacacggcgc gcctaaggcg      4920
     atccttacgg accaaggcac acatttccta aattcattaa tgagatgcat tgcacggaaa      4980
     ttcaaaataa agcaatttaa gaccaccgcg tatcgaccgc aatccaacgg atcgatcgag      5040
     agatcacacc acgtgctatg ggaatacctc aaacaatttg tggacaaaga taggaactgg      5100
     gacgaaatat taaaattagc cagtttctca tataacacta gcgtgcacga gggcacccga      5160
     ttcacccccc atgagctcgt gtatgggcac ctcgcccgca cacccaccag cgagaccgta      5220
     gaatttaatg ataacaacga aagttacgca gaatattacg ctgacctagc tgataaaatt      5280
     ggtagggctc aggcgatagc gcgccgaaac ttagataacg cgaagatcta aaaggtattg      5340
     cgaccgacgc gtaaacgcat gtacgttccg caaaggcctg aaccggagag taagggacac      5400
     cggagcggca gtaaagcagc gacaatgaac agaacaacat gggaccattc cgactagccg      5460
     ctcttctaat ccttccagcc tgccaagccc tgctagggta cgactgcgga ggcaacggtc      5520
     taaatataac aaccctatcg ttgctcgaca tcggaagctg taacgtcgag agattggaac      5580
     cgagaagcac agaaacgtac attcagctga tgcaatcatc cgactacgat agcgtcacag      5640
     ccttgcagtg taagctagag atcgaccgga cgatatatta ttgcgggatg cattcccacg      5700
     tctcaatcgt cactaacggg cataaggatt atgtcaagga gattgggcat gaaaactgcc      5760
     agcgcatcca cgataccgga accctgaaca tcgggactgc agtcgtggat cgcctgaagg      5820
     tcaatgcgac gaaccaccgg agcatcacaa tggccggaca aacgtacaca gacggacgct      5880
     gctctggaac gcagtattcg gacgggttcg gaacttggga gaacgtggtg gtacaggcca      5940
     cgctaaaatt aacacttaaa tcgttcgagg cctcgtacaa gcgaacaacg ggcatgatca      6000
     tcctgccgac gggaacgcgt tgccaggcgc aactcgggag ctgcatcgac tacgacggga      6060
     ctgaaacatt ctggactttg acgcccgccg atagctgcca ttttaaccag tacgacgtac      6120
     tgtacgaggg gattgccact aagttgtccc ctagagacaa tcagacgaca ccgacagtat      6180
     acacagtaac cacgaaggaa actaccttcg cattagcaaa aaccaccgaa ttcaatcttt      6240
     gcggatatca actctaccgc actgaacatc cmaagttgat catactggaa acacagaagg      6300
     ggaaaacctt cgccgccaaa tcacgtatat ccgtgaataa cctagatata ttcgcttacg      6360
     tgaactccaa gttcgtgtac gtagagaagc acgtcaagca tcagctcacc agactctata      6420
     atgacattat ggagcagaag tgtgcgctgg agaggcaaat actacagaat gccttgtcgc      6480
     tctctgcgat cgctcccgac gagatggcct acagggtgat gaaatcacca ggatacaccg      6540
     ccgtgaccgc gggagaagtc atccacatca tccagtgcgt accggtaacc tgtaagttga      6600
     ggcacacgga gacatgttat aatgagctcc cagtgacgta caagaacgcc acatactttc      6660
     tgctacctcg cactagaata cttacccgca aggggacgca taaagactgc aacgagctat      6720
     tgcccaacat gtatcagttg aatgatgcct ggtataagct aaccaccaag ccatcggaat      6780
     cacttccgcc tccagttatc cagccactct ctacacctag gtggaagtac gtgagtccag      6840
     atgcgctcgc cacgagcgga atttactctg ctgatgacct cgaccgcttg agggaccaca      6900
     ttatgttccc ggtcgagaaa ccatccacgt tgaacaccat cgcgcgagga gcactgggac      6960
     aaaacatccc cggagggagc atctcgttag ccaacttact cgacgaggaa gctctcgaca      7020
     aaatcgccga gagcgcggga aaacggatct ggaaaggctt cataactttc ggttctgcta      7080
     gcgcaggggt gctagccata ttcgtgatag ccaggatggt taagttgatc atagacacga      7140
     tcatccatgg atatgcgttg cataggatct acggatggag catccatctt ttgggagccg      7200
     tttggtcatc aatcacgaac ctgttgctgc acatggcgaa accgacgaac cagcccgact      7260
     cgcccagcat cgaacgcctc atgccacacc aagccgcaga caagccattg ccagccaccg      7320
     cacctcaaaa ggaggaaacg gaggaacacg cgcgttccta cagcgaactg cgaaaatatt      7380
     taaaagagga cattgtataa aactgttagt gtaaacagtg ttagtgaata agtgcgtaag      7440
     atagcatact tttacctcaa taagaaacgc acaggaaaat gtcgtgcagg acgcccgaca      7500
     ttttctttcc gaggggggaa g                                                7521
//
ID   Gypsy-19_PBa-LTR repbase;    DNA;    INV; 2391 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2391
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 710-710 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2391 BP; 622 A; 615 C; 512 G; 642 T; 0 other;
     tgtgacgtca ggagagccaa cgggtaaaat ttttccttct cctttttatc ccacctgcgc        60
     agaagcgcca ctattctagc cgccaaagtt ggcaacaacc ggctctcctg ccgtcgacat       120
     accacgtgat gcgccttacc gccagtaaat atacactata ataaatataa gtattataat       180
     aatataggca atcccatagg ttgcaaatta ttagataacc gataatagta agcatttttc       240
     ctaaaataag taataaaatt aaataataat aataaataaa atgataaata acaataacaa       300
     atcatgctaa caataaatct aattaattgt aaaattatta ctataataag gctcgcgttg       360
     ctgttgcgcg catcatctcc agtcagccgc gcgctgattg gccgaccaac gaccattata       420
     gatatgtacg tctagtctag ctctatagtc tatgaccgcc gcgagcgcca cgtgcgttgg       480
     cgtacccacg ccatccgcca tcttgcgcca cgtgcgttgg cgtacccacg ctaccgccat       540
     gttgcgcaac agcgccgccg caggcacgcg ttacaacgcg cggccatact cgttcactct       600
     tgtgcgcgtc gtcgaccagt gaacaccgcg cgagcgtcgt ctcgttcaag tataagcgtg       660
     tttcaatctc tagacttagt tcaaattgtt tcaatctcta gttttagttc aaatcctatt       720
     aatagtttca aattctagtt tgatatatat agtgttaata ttccgtgagt gtaaattcag       780
     tgaatatcta aatataacga tttctattta acgccacgtg tccttcatta tctcatccct       840
     tgtctccgag attccgataa taacggatgt gttcgcgagg ctaaagaggc aacgggcgtt       900
     catcataact caagtcttct tttaccgaat aattagcagc taaagcaaga attccgatcg       960
     tttctggggg caaggtgttg tgcgtcatcc gcacttacca caaaggaaac atcggacttc      1020
     gagcacgcgg tagctcatgc attccaacgc gacgccgaac cataatgcgt aattggctcg      1080
     cagccgaatg caatatccta accctaacct tttaattaaa tacaatatac gcctagagcc      1140
     tctgccgaat gcctaaggca cggaagaatc gcgcgggtcg taacaacgca cttcggcgac      1200
     tcgaatacga cctccacgtg gccgcgattt acgaccacaa tgcgatcatc ggcgaagaag      1260
     tgacttacga cggcgagtac gaactcctcg tgcatgatcg cctctggagc gccttaccag      1320
     ccccatccgt gcccgtagca gcttaccagg gaagcagttt tcgaccacgt atctccctcg      1380
     aagagtatct gcgcagagca aacaccgaaa ggtaagtgag aatcatacat cgagttttat      1440
     tcccggttgc tttcgcgttt tcccaccggg catacgttta caccagtgaa atatagagta      1500
     taaagaaatt agatgtaaac gaatataagt gtactcgtcg cgctcaggat tctttcgggt      1560
     tgcatcattc gctttgttcg cgtcgagcga ccgccgcata gttgcatcac tcgaccggaa      1620
     gggttttacg atcgacccct ttttttttgc ctcccttgct actttcccct aaggcatgta      1680
     gggttttgag ccgctttatc gttgcgcatg gaaatattcc agtttcgaaa taccatttta      1740
     acgattgaat attcgccgcg taatgttaac acccgttatt tgacgtgatg tgcccgcctt      1800
     gttttctcga gccacgagac tcgcgcactc acccaggcgc cgtatacaga tatcgtagga      1860
     gtacggtgcg ttgccttacc acgtttggat atcgacgcgt agacgacgct atcgccgagt      1920
     cgttccctaa cagtgccgaa tatctttgct ttcgatgcaa ggaagaaata ccagagggga      1980
     ctcttacgta tcgtcttgaa ctggcccacg cgttccagtt tgggtatact tccgcccggg      2040
     atcattgcga ttgctgccgt accagtcttg taatagtccg cgacattgag ctttgccctg      2100
     actgcaccga ggtttttatc gtatctctag aagtgctcag ggaattaggt aacgccatag      2160
     agaacatctg cggacgatat tacctcgacg agacgaatcc cgctcccaac ggcattttat      2220
     cgcgccggct aaccaatttc tccgtttcac tgatccgctc acggtcaaat aatcactcga      2280
     cgtctggtta aacgcaaggt cagccgtgta atttgctgaa attcctcgag agcgttttca      2340
     ataatttgcc gctgagatta tcggaggggt ccccgcggtt ttgacgtaac a               2391
//
ID   Gypsy-19_RP-I repbase;    DNA;    INV; 4217 BP.
XX
AC   ACPB02043044;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_RP_;
KW   Gypsy-19_RP-LTR; Gypsy-19_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02043044; Positions     337    4553.
XX
CC   Positions [3414-3890] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..981
FT                 /product="Gypsy-19_RP-I_1p"
FT                 /translation="MQPVRVRIRFEVGEERNNVVIRVASIRLMSEDTTYVF
FT                 PTHLQHSDLHEELFSIGTVKNVCKALIKVGQFRNIMVTLPSEIVPLYLDDN
FT                 LNFVFRSTYLEELSMEQTLISGKKIPITAVENQTELIKIIEKLTTKLDAKE
FT                 NKQVDLTHIHKQFILQKFQGKENAIEWITLFEKECNRCEVTTDHTKIQILR
FT                 LFLEQNAVEWYSSTLCKLTLTGEWKDWRESFIQTYGDKSWRSVHYAYTFRF
FT                 IKGSLLDYALKKERLLLETEPKMSDRSRINHIVVGLPLYIQDRLDKEEIQA
FT                 TESLMYQLRRYSQEYPRVKKGEV"
FT   CDS           1317..4205
FT                 /product="Gypsy-19_RP-I_2p"
FT                 /translation="MLQNEQTFKTISGVQKSCCTIKLPMQIHKIREEIEAH
FT                 VIKNDAFSYDVLLGLDAIQKFHLLQDDKLNILQRVKENNIEIVDYEQRKLT
FT                 EEISYCEYEQGGYLEKLQHLDNLKKTKLMSVISEDREIFAKHKYDVGKVEN
FT                 HEAHIKLLENKYISKKPYRCSIPDRQEIESQITKLLEAGLIEESESPFAAP
FT                 VTLAYKKEDGRRSRLCIDFRDLNKILVPESQPFPIIEDIIVKTRNCKWYSV
FT                 FDISSAFWSVPIRPKDRHKTAFVSQTGHYQWKRLPFGLKISPAIFQRVLAN
FT                 TIRRHGLHEFCTNYIDDILVFSKTFDEHISHIKKILQAIKLEGFRLKLSKC
FT                 NFAQSSVKYLGHIIGCNSVSPHQDNIRSIKDFPRPRNKKNIRQFLGKINFY
FT                 HKYIPDYTRLMEPLHNLLRKNVDFQWTSECNTTFVQIKELLCQSPILSIFD
FT                 PERETFLFTDASTLGIGAVLKQIQDNGELHPVAYFSKKVSPAQAKKKAIYL
FT                 ECLAIKEAIRYWQHWLIGHKFQVVSDHKPLENIKVKARTDEELGDLVYYLS
FT                 QYDFTIRYAPGRTNQEADALSRNPVLEHFENKDDVLQIVNFVSIEKIKLDQ
FT                 NSNKNELNTDRNTHKKGDLLYKNLRGRERIFVSQDFGLKLIENVHTYYGHI
FT                 GVSHVAAKIRPFYYFRNMDKHIKEYCDHCDICKKNKSRRCREIGLLSQLGP
FT                 PKEPYEIMSLDTIGGFAGNRSPNRYLHLLADHFTRFAYTCPSKGQKAKDLI
FT                 RFLRPILEKNKVKLLLADRYTGINSREFKAFLRQYGVTLMFTAVDCPFSNG
FT                 LNERLNQTLINRIRCKINEQTQRPWSQIAIECTEEYNRTIHSVTKFSPMYL
FT                 LTGNESSILPPTLTQPQDLGRNRICAFENSQRHHVFNKSRVDQKRKEHDFK
FT                 VGDFVYVETGNRLNRHKLDPIRSGPFKIVRRLSPTIYEVASDRRRLHANIV
FT                 HSSKLVPF"
XX
SQ   Sequence 4217 BP; 1534 A; 695 C; 797 G; 1191 T; 0 other;
     ttataaatcg gtttttcgtc aacaagcatc cgcaagatgc agccagtcag agtaagaatt        60
     cgttttgaag ttggagaaga gaggaataat gtggtgatta gagtggcttc tattcgatta       120
     atgtctgagg acactaccta cgtttttcca acgcatttac aacactcaga tctgcatgag       180
     gagcttttta gtattggtac agttaagaat gtatgtaaag cattaataaa ggtaggtcag       240
     tttcgaaata taatggttac gttaccgtct gaaatagttc ctttatactt ggatgataat       300
     ctaaacttcg tttttagaag tacttatttg gaagaattat ctatggaaca aacattaatt       360
     tcaggaaaaa agataccaat aacagcggtc gagaaccaaa cagaattaat aaaaattatt       420
     gaaaaactga ctacaaaact agacgctaaa gaaaataaac aagtagatct aactcacatt       480
     cacaaacagt ttattttgca gaaattccag ggaaaagaaa atgccatcga atggataacc       540
     ctttttgaaa aagaatgtaa tagatgtgaa gtaactacgg atcatacaaa aatacaaatt       600
     ttgcgactat ttttggaaca aaacgctgta gagtggtaca gttcaacatt gtgtaaattg       660
     acattaactg gtgaatggaa ggattggcgt gaatctttca tacaaacgta tggtgataaa       720
     agttggcgat ccgtacatta cgcttacact tttagattca ttaagggatc attactggac       780
     tatgcattga agaaagaacg tttattgtta gaaacagaac ctaaaatgtc agacaggtca       840
     cgtattaatc atattgttgt tgggcttccg ttatatatcc aggatcgttt ggataaagaa       900
     gagatacaag ctacagagtc tcttatgtac cagctacgcc gatattcaca agaatatcct       960
     agagtaaaga aaggtgaggt atgaagacta gcaaatgtcc aaccttatga cactgaaagt      1020
     cagaagatca taaaaaaaca accgtgtaca atttgtgagt cactgggcta tcaaggacgt      1080
     tttcacccac cggattattg tagaaataag ggaaagactg ctaatgggaa acaagtaaat      1140
     ttcactgcga taactgatgt agatgtcgat actcacaatg agacaaaaaa cggagataca      1200
     caccacttat tcgattaaat gtaacaatta acaataacaa agttacggga atttacgaca      1260
     gtggttccaa tgtgacatta ataaattcaa aaattgtaga agacataaaa cataagatgt      1320
     tacaaaatga acaaacattt aagacaatta gtggtgtgca aaaaagttgt tgtacgataa      1380
     aattgcctat gcaaatccac aaaataagag aagaaataga agcccatgta ataaaaaatg      1440
     atgctttttc gtatgatgta ttgttgggat tagatgcaat tcagaaattt catttacttc      1500
     aagatgacaa actgaatata cttcaaaggg ttaaagaaaa taatatagaa atagtagatt      1560
     atgaacaacg taaacttaca gaagagataa gttattgtga atatgaacaa ggtggatatt      1620
     tagagaaatt gcagcatcta gataatctca agaaaacaaa acttatgagc gtgataagtg      1680
     aagacagaga aatatttgct aaacataaat acgatgttgg taaagtagaa aatcatgaag      1740
     ctcatattaa acttttagaa aataaatata tttcaaaaaa accttataga tgttcgatcc      1800
     cagataggca ggaaatagaa agccaaataa ccaagttact tgaggcaggc ttgattgaag      1860
     aatctgaatc tccttttgca gcgccagtaa ctttagctta caagaaagaa gatgggagac      1920
     gttcgcggtt atgcattgat ttccgagatc taaacaaaat tttagtacca gaatctcaac      1980
     cgttcccaat aattgaagat atcattgtaa aaacacgaaa ctgtaaatgg tactcagtgt      2040
     ttgatattag ttctgctttt tggtctgtac caataagacc aaaagatcga cacaaaacgg      2100
     cttttgtttc tcaaactggt cattatcagt ggaagagact tcctttcggt ctgaaaattt      2160
     caccagcaat ttttcagcga gttctggcaa ataccattcg acgtcatggt cttcacgagt      2220
     tttgcacgaa ttatattgat gacatcttgg tattctctaa aacttttgat gaacatataa      2280
     gtcatattaa aaaaatattg caggcgatta aattggaagg atttcggttg aaactatcta      2340
     aatgtaattt tgctcagtct tcggtaaagt atttaggaca tataattgga tgtaattctg      2400
     tcagtcctca tcaggataac ataagatcaa ttaaagattt tcctagacca cggaacaaaa      2460
     aaaacattcg ccagttctta ggtaaaataa atttctacca caagtacatt ccagattaca      2520
     ctaggctaat ggaacctctt cacaacctcc taaggaaaaa cgtagacttt caatggacat      2580
     ctgaatgtaa tactacgttt gtacaaataa aagaattgtt atgccaaagc ccaattctat      2640
     caatttttga tccggaaaga gagacatttc tttttacaga tgctagcact cttggaattg      2700
     gagcagtttt gaaacaaatt caagataatg gtgagttaca tccagtagca tatttttcga      2760
     aaaaagtgtc tccagcacag gcaaagaaaa aggcaattta tcttgagtgt ctagcaataa      2820
     aagaggcaat acgatattgg caacactggt taatagggca caagttccaa gttgtgtcag      2880
     atcacaaacc attggaaaac ataaaagtta aagctagaac tgatgaagag cttggagact      2940
     tggtatatta cttatctcaa tatgatttca ccatacgtta tgctccagga aggacaaacc      3000
     aagaagcaga tgccctttcc cgtaatccgg tattggaaca tttcgaaaat aaagatgacg      3060
     tgcttcaaat tgttaacttc gtctcgattg agaaaataaa acttgaccaa aatagcaata      3120
     aaaatgaact caatactgat aggaacaccc ataaaaaagg tgatctcctc tataaaaatc      3180
     tacgaggcag agaacgtatt tttgtgtcgc aagactttgg gttaaaatta attgagaacg      3240
     tacacacata ttatggtcac attggggtaa gtcatgtagc agcaaaaata cgtccgttct      3300
     attatttccg aaacatggac aagcatataa aagaatattg tgatcactgt gatatttgta      3360
     agaaaaataa atctagacga tgtcgagaga ttggattatt gtcccaatta ggtccaccaa      3420
     aggaacctta tgaaataatg tcactagata cgattggggg ttttgcaggc aacaggtctc      3480
     ctaatcgtta cctacatctt ctggctgacc attttactcg ttttgcttat acatgtcctt      3540
     cgaagggtca gaaagctaag gacttgattc gcttcttgcg gcctatttta gagaaaaata      3600
     aggtaaaact tctccttgca gatagatata caggtataaa ttcaagagaa tttaaggctt      3660
     ttctgcgtca atacggcgtt actttaatgt ttacagcagt agattgcccc ttctcaaatg      3720
     gtctcaatga acggctaaat caaacactga ttaatcgtat tcgttgcaag attaatgaac      3780
     aaactcaacg accatggtct caaattgcca tagaatgtac tgaggagtac aaccgtacta      3840
     ttcacagtgt gacaaagttc tctccaatgt atctacttac gggaaatgaa tcttcaatat      3900
     taccgccgac tcttacccaa ccacaagact taggaagaaa tagaatatgt gcatttgaaa      3960
     attctcagag acatcatgtt ttcaataaat ctagagtgga tcagaagaga aaagaacatg      4020
     atttcaaagt gggagatttc gtttatgtgg aaacaggtaa tcgtctaaac aggcacaagt      4080
     tggatccaat acggtcagga ccatttaaga tagtccgtcg attgtctccc acaatatacg      4140
     aggtagccag tgaccgccgc agattacatg ccaatattgt gcattcgagc aagctcgtac      4200
     ctttctaagg ggggaga                                                     4217
//
ID   Gypsy-19_RP-LTR repbase;    DNA;    INV; 333 BP.
XX
AC   ACPB02043044;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_RP_;
KW   Gypsy-19_RP-I; Gypsy-19_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-333
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02043044; Positions       4     336.
XX
SQ   Sequence 333 BP; 106 A; 37 C; 60 G; 130 T; 0 other;
     tgtaagagtg aactatcttg tttttctttt tatttattta aagaaggtat cttggcgcgc        60
     tttttgtttt tgaggaaggt taagggaggt tagcacccca taaaaatatt gaatgtgcag       120
     tgtgcagttt tctattatag tattgaagtg aggtttaatt aggtaaatga ctataaaaac       180
     cgattttctt ttataggtga gctttttact tatttgttta taagataact ttgtattata       240
     aggtaacttt gtattgttag actaaaataa aatcttcttt tataggaaaa atcggtatat       300
     agtgaataac aaaacccgaa cccatttacc aca                                    333
//
ID   Gypsy-19_SI-I repbase;    DNA;    INV; 4963 BP.
XX
AC   AEAQ01023421;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_SI_;
KW   Gypsy-19_SI-LTR; Gypsy-19_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4963
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023421; Positions    5371     409.
XX
CC   Positions [2427-2933] - Reverse transcriptase
CC   Positions [3990-4466] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..4961
FT                 /product="Gypsy-19_SI-I_1p"
FT                 /translation="MTETTTTLGEIWPNRLSCYTTKLKDINILHLLCYSQE
FT                 GNPKTNRKNVRAFKGFRFANDEEYEVKRNLIVNTFSVDELVKICEWFQFDL
FT                 GSKSGSKEKLADCLCTRLNKLNQLKPDDESEDEDDEDAHTNDGEVNDENDR
FT                 REEERTMNPNLSGEPDNNVQVRGNSRRFSGDEGTSRQACQFVPLRSNSEHD
FT                 ARCQKDDHRQREMERRQRKEVSRHSEEGTQYYEDEIRRLNDDIRRLNARRH
FT                 IYDARRVNDDGYHDEEQRREDYVRRDYKQEYNEQRIPYYGETITRMNNNIR
FT                 PRDVEALIPTFTADDDYPIEKWLSDFEDIAQMANLNELERAVFGRKAIKGT
FT                 AAKFLRCQRHTERWTELQKSLLHEFRRKKTSAELHEELTKRKQKSNESLQQ
FT                 YLYAVTEIASYGDISDESIIDYVIRGINDDDVNKMVLYGARTLDELKNKLR
FT                 VYTKYVSSQSITTKDKTKIRKVNEVKPTKTTTRDTTDMKKERCYNCGRSGH
FT                 KSDSCQDKEKGKKCFNCDQFGHISADCSQTRRTSAKQKADKSAETTTKNAY
FT                 LAKQAEDFHEMKKHVSINGHNMIALIDTGSEVNMIKFEKYDELGKPKLNSR
FT                 ATTITGLGQYEVKTMGGFHAKVNVDDVKTEMEMHVVPSSAIQYDVVLGQSL
FT                 LQNNTIVINQHTIKLVTPAATDELIIEEEKMHTCELKDGQLSEASEKNPLC
FT                 YITLNNDEINLDVGNQRYFETIVNLVNNYQPADVKETNVKMKIILKDDQPI
FT                 YQRPRRLSRPEQQEVDRQMKQWLKDGIVRPSSSEYASPIVLVKKKTGDIRI
FT                 CGDFRALNKKMVRDHYPLPIVDDQFDKLTGAIIYSTLDLKNGFHHVPVEEE
FT                 SRKYTSIIVPNGQYEFLRCPFGICNSPSVFQRYVNEVFKELIQKNIVLTYM
FT                 DDLIIPATNEEQALERLKMVLETASKYGLQFNWKKSQFLKNDIEYLGHVIK
FT                 NGAIKPSPRKIAAVMHFPKPITKKQIQSFLGLSGYFRKFIRGYALLARPLS
FT                 EILKKDVPFRFGPEEEASFNQLKRKLSTEPVLKIFDHQKETELHTDASSEG
FT                 YGAVLLQKDDVDGQFHPIHFMSKKTTDAEKKKHSYELEVLAVVEAFKKFRH
FT                 YLLGIPFKVVTDCQAFAKTMDKKDPIPKIARWALYMQDFQFTVEHRSGRRM
FT                 QHCDALSRNPVALFTQNELIQRVARAQRDDEYLQTLATVLQDKPYKDFCMI
FT                 RDVVYKERDGKKLLVIPNSMTQDIIRRAHDMGHFAVKKTTEILKNEYWISN
FT                 LEAKVERYIRNCIPCILAKDKGGKKESLLHPINKGNKPLCTYHVDHVGPLE
FT                 ITNKKYKYLLVVIDAFSKFTWIYPTKTMSSEEVISKLEEQSALFGNPSVIV
FT                 SDRGGAFTSQLFEEYCTKQNISHHLITTGTPRGNGQVERINKVILSILTKL
FT                 SIAKPDYWYRHVRKVQQAINGNHQRAIGRTPFEIMFGTKLRHADDPSLQQL
FT                 LQQELLECFINERDELRAEARAQIEKIQTENVKQYNLRRKEARKYTIDELV
FT                 AIQRTQFTQGSKLLPGFIGPYRVTEKIGYDRYAVEKAGQQLGPRTTTTSAD
FT                 KMKPWSEPHAANDVLDEVPDEITNQISQGVQNDVPDKSISESGTDSSQEWP
FT                 "
XX
SQ   Sequence 4963 BP; 1776 A; 958 C; 1113 G; 1116 T; 0 other;
     tattgggggc tcgtccggga ttgagcgagc agttgataaa tataaagata cacgacgacg        60
     acgacggtta acctaaccta taagaaaaaa ggggcacggt gagaaaaatg acggaaacga       120
     cgacgacgct tggcgagata tggccaaata ggttgagctg ttacaccacg aagctgaagg       180
     acattaatat actgcatctg ctgtgctaca gtcaagaagg taacccgaaa acgaaccgta       240
     aaaacgtccg cgcgttcaaa ggattccggt tcgctaacga cgaggaatac gaagttaagc       300
     gaaatttaat tgtcaatacg ttctctgtcg atgagcttgt aaaaatttgc gaatggtttc       360
     agttcgatct aggatctaaa tcaggatcta aagaaaagtt agcagactgc ttatgcactc       420
     gattaaacaa attaaatcag ctcaagccag acgacgaaag tgaggacgaa gatgacgaag       480
     atgctcacac aaacgatggt gaggttaacg atgaaaatga ccgacgtgaa gaggaacgca       540
     cgatgaatcc gaacttgtca ggagagccag acaataacgt tcaggtacga ggaaattcac       600
     gacgattttc tggggacgaa gggacatcgc ggcaagcttg tcaattcgtt ccgttacgaa       660
     gtaatagcga acacgacgca cgatgtcaga aagacgatca tcgtcaacga gaaatggaga       720
     gacgacaacg aaaagaagtt tctcggcatt cagaagaggg tacgcagtac tacgaagacg       780
     aaatacgacg actcaacgac gatataagac gtctcaatgc ccgacgtcat atttacgatg       840
     cacgacgcgt gaatgacgat ggataccacg acgaagagca acgacgagaa gactatgtac       900
     gacgagatta caagcaggag tataacgagc aacgaattcc ttattacggt gagacgatta       960
     cacgaatgaa taataatatt cgaccacgag acgtagaggc cctgatacct acattcaccg      1020
     ccgacgatga ttatccaatt gaaaagtggc tgtcagattt cgaggatatt gcgcagatgg      1080
     ccaatcttaa cgagttagaa agagctgttt tcggtcgcaa agcgattaaa ggaacagctg      1140
     ccaaatttct acgatgtcaa cgacacacgg aaagatggac ggaacttcaa aaatctttgc      1200
     tacacgagtt tcgaagaaag aagacgagcg ctgaattaca cgaggaatta accaaaagaa      1260
     aacaaaaatc gaatgaaagt ttacagcaat atctctatgc tgtaacagaa attgccagtt      1320
     acggagatat ttccgacgaa tcaataattg attacgtgat tcgaggcata aacgacgatg      1380
     atgttaacaa gatggtcctc tacggtgctc gtacattaga tgaactgaag aataaattac      1440
     gagtgtatac caaatacgta tccagtcaat ctattacgac aaaagataaa acaaagatta      1500
     gaaaagtcaa cgaggtaaag cccactaaaa caacgacgag ggacacgact gatatgaaga      1560
     aagaacgatg ctacaattgc ggacgcagtg gacataagtc ggatagttgt caagacaaag      1620
     aaaaaggcaa aaaatgcttc aattgtgatc aatttgggca tatttcagcg gattgctcac      1680
     agaccagacg aactagtgct aaacagaaag cggataagtc agcggagact acgacgaaga      1740
     atgcctatct ggctaaacaa gcagaggatt tccacgagat gaagaaacac gtttccatta      1800
     atgggcataa catgattgct ttaatcgaca cgggcagcga agttaatatg ataaaattcg      1860
     agaagtacga cgaattggga aagcccaagt taaattcaag agcgacaaca ataactggcc      1920
     taggtcaata tgaagttaaa acgatgggcg gattccacgc aaaagtaaat gtcgacgatg      1980
     tcaagaccga aatggagatg cacgtagttc caagcagtgc aatacagtac gacgtggttc      2040
     tcggtcaatc attgttacaa aataacacga tagtgataaa tcaacatact attaaattgg      2100
     tgacgccagc tgccacggat gagttaataa tcgaggaaga aaagatgcac acctgtgaac      2160
     taaaggatgg tcaactatca gaagctagtg agaaaaatcc tttgtgctac ataactctaa      2220
     acaacgatga gataaatttg gatgtaggca atcaacgata tttcgagact attgtcaatt      2280
     tggtcaataa ttatcaacct gcagatgtca aggaaacaaa tgtcaaaatg aagattatac      2340
     tcaaggatga ccaaccgatt taccaacgcc cacgaagatt atcacgacct gaacaacaag      2400
     aagtcgatcg gcaaatgaaa caatggttaa aggatggcat agtgaggccg agctcgtcag      2460
     aatacgcaag tccgattgtt ttggtcaaaa agaagacggg agatatcagg atatgtggcg      2520
     acttcagggc attaaataag aaaatggtgc gagatcatta tcctttgcct atagtggacg      2580
     atcaatttga taaattgacg ggagcaataa tctactcgac gcttgacctc aaaaatggat      2640
     ttcaccacgt gccagtcgaa gaagaaagcc ggaaatacac gtctatcata gttccgaacg      2700
     gccagtacga attcctacga tgtccatttg gcatatgtaa cagtccttca gtattccaac      2760
     gctatgttaa tgaggtattc aaagagttaa tccagaagaa tattgtgctt acttatatgg      2820
     acgacctgat tatacctgcc acaaacgagg aacaagcgct agaacgattg aagatggtat      2880
     tggagactgc atcgaaatat ggactgcagt tcaattggaa gaaatctcag tttctcaaaa      2940
     acgatatcga atatttaggt catgtgataa agaacggagc tatcaagcca tcaccaagga      3000
     agatcgcggc tgtgatgcac ttcccaaaac ctattacgaa gaaacaaatc cagagttttt      3060
     tgggactatc tggatacttc agaaaattca tcaggggtta tgccttacta gcacgacctc      3120
     tctctgagat actcaaaaag gatgtgccgt ttcgattcgg accagaagaa gaagcatcgt      3180
     ttaatcagtt aaagagaaaa ttatctacag aacctgtttt gaaaatcttt gatcaccaaa      3240
     aagaaacaga attacatacc gatgcttcaa gtgagggcta tggagctgtc ttacttcaga      3300
     aagacgacgt tgatggacaa tttcatccca tacatttcat gagcaagaaa acgactgatg      3360
     cagaaaagaa aaaacatagc tacgaattgg aagttctagc tgtggtcgag gcctttaaaa      3420
     aattccgaca ctatctatta ggcattccgt ttaaagtggt gactgactgc caagctttcg      3480
     cgaagactat ggataaaaag gatccgatac cgaagatagc acgatgggct ctgtacatgc      3540
     aagatttcca atttacagtg gaacatcgtt caggccgcag aatgcagcat tgcgacgcac      3600
     ttagtcgtaa cccggtcgca ctattcacac aaaacgagtt aatacaacga gtggccagag      3660
     cacaacggga tgacgaatat ttacaaacgc tagcgacagt actacaagac aagccgtaca      3720
     aagatttctg tatgatccgg gacgtcgttt acaaggagcg cgatggtaag aagttactag      3780
     ttatacctaa ttcgatgacg caagacataa ttagaagagc tcatgacatg ggtcactttg      3840
     ccgttaagaa gactacggaa attttgaaga acgaatattg gatttccaat ttagaagcaa      3900
     aagtcgaaag atacattcga aattgtattc catgtattct agccaaggat aaaggaggta      3960
     aaaaagagag tttattacat ccaataaata aaggaaacaa accgctatgt acttatcatg      4020
     tcgaccacgt tggtcctctg gaaattacca ataaaaaata caaatattta ttggtggtaa      4080
     ttgacgcttt cagtaaattt acgtggattt atccaactaa aactatgagt agcgaagaag      4140
     tgatatcgaa actagaagag caaagcgctt tattcggcaa tccttctgta atagtatcag      4200
     atcgaggagg agccttcaca tctcagctgt ttgaagaata ctgcacaaaa cagaacatta      4260
     gtcatcatct gattacgacg ggaacaccac ggggaaacgg ccaagttgag agaatcaaca      4320
     aagtcatatt atctattcta acgaagttat caatagcaaa gcctgattat tggtatcggc      4380
     atgtaagaaa agtacaacag gccatcaatg gtaaccatca acgagctata ggaagaacac      4440
     ctttcgaaat tatgttcggc actaagctac gtcatgcaga cgatccatcg ttgcaacaat      4500
     tgcttcaaca agaattgctt gaatgtttca taaacgaaag agacgaatta cgtgctgaag      4560
     cccgagctca gattgagaag attcaaacgg aaaacgttaa acaatataat ctacgaagga      4620
     aggaagcacg aaagtatacc atcgatgaat tggttgctat tcaaagaacc cagttcactc      4680
     aaggatccaa actacttcca ggatttatag gaccctaccg tgttacggaa aaaattggtt      4740
     atgaccgata cgctgtcgaa aaggctgggc agcagctagg accaaggacg acgacaacca      4800
     gcgctgacaa aatgaagcca tggtcagaac ctcacgcagc aaatgatgtc ctagacgaag      4860
     ttcctgacga aataacaaac cagatttccc aaggagttca gaatgacgtt cctgataaaa      4920
     gcataagtga gtccgggacg gactctagtc aggaatggcc gaa                        4963
//
ID   Gypsy-19_SI-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   AEAQ01023421;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_SI_;
KW   Gypsy-19_SI-I; Gypsy-19_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-225
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023421; Positions     408     184.
XX
SQ   Sequence 225 BP; 76 A; 47 C; 61 G; 41 T; 0 other;
     tgtggagtta agaagtaccg cgtcgcagga cgaaagggga aaagagggcg caggcgagcg        60
     aaggcgaagc gagcgcctgg caacaaggag agagacagag agagagagat cgaacacgaa       120
     cacgaggaac gggactctaa ctaaatcagt ctaattcttt ccatgtacgc tatattgaaa       180
     tatatcttta tccactattc aactcagtgt gacttcaatc ccaca                       225
//
ID   Gypsy-19_SiCu-I repbase;    DNA;    INV; 7337 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-7337
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5043-5043 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..2362
FT                 /product="Gypsy-19_SiCu-I_1p"
FT                 /translation="MPKKTDQQNVTERRRCRRLHNLPPEFSASQLPPIRSA
FT                 SNSTKSTSASTPVTSASESESFDADKQSVSTGPDDVFCTPTKATPTQSASR
FT                 AISAAFARANTPSLSAQRSKIVQDCFIPNLEADFEDDSMQNGTPLRGIKLT
FT                 PTLSRLRSKALAVIRRLSPPKQNDNEEETCTSSNQQQQQPHNIIEKRDREG
FT                 NILSISYTYQFSSASKTAESRPLSSAPVDDNGDRDIFDDTLPTATPPPPRR
FT                 NLPPPQIPELSASARGRAFSQALLTQPLQHFSQTPALDAYFHGTLGNAHPQ
FT                 DKTTVENAHSPHHVTSNPQDRSTSQARSAQNNSDDAQDDAHVPADDNNETD
FT                 DNQQHHSESVVNSEPRNRARSASDXNLNLLNIRLVFSSSSSSSESLNSLAS
FT                 DDSDNMPDYTLMPKYDKPLTVRDVKLFLQQFRLWAGQQKLTDPAKKASLIL
FT                 AFTNEDARHWLLLASDQVHNNEISFEAFVELFLNNAPITTTSGTEIFKLLS
FT                 EPPAPNDLASSYVLRLRYKIGDDWTDAHQKDYVAIIMDNLPKPVASYLALR
FT                 GNRPETFEELLAGVREYEQTGRDSTAAAPQQHVVKVENQVASTSIQGNQTI
FT                 ADMQSIMQILLREVAEIKAVNTDPVPSQXQRPDQKSQPAPNQRQSQQGGQR
FT                 PTIYCYYCNGPNHIERDCGIKRRERGGHRGGSRGGGGGRGRGRGGQSWQNY
FT                 NGHGQQYQQQYQQQYGQGPHQQNWRAPPQDPGYYQQAAPQLNWQPVPAIQQ
FT                 QPTPYITYPPSNAPGN"
FT   CDS           2287..6153
FT                 /product="Gypsy-19_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LATSSSNPATADSLHHLSAQQRSGKLIMAQEINTDAR
FT                 APVPTTENNAHKKNEEASIFTNVFEDAHHNNNHPPTQSNLPVNRGPTVEIQ
FT                 IHKNKYTALVDSGAVTSLISKELATNFTKIQNNHLVLRSISNNLIVDHGIA
FT                 LVEFELAEKIFTFPMVIVDVPKCEAVIGDDFLQTFCAVIDRDKNQLYSSNY
FT                 NWSTPLSPKQHIWDRYGISTQIKWESKTEIQQQSVQANENNEPIYAEVRHL
FT                 QKAESIPHWYLRLSKSVSLPPRSQVHVPVCTVGLSDTDIAVITPSNRLMKT
FT                 NDILTPHMIISKETKSVVLTNLSNEKKFLCPKTRLGKLTNLITADDILPFS
FT                 TKKTTYIHSTATSNPVPATDLKKKYKDIKIGSDVPDDVRGKIYNLIEKYED
FT                 VFAFDPEKLGQAKHYKYHIETGNAPPQRMKPFNLTEAEHKVIKENVAELLQ
FT                 KDLIEPSDSPWAAAPFLVPNRTEDGKIKYRCVFDFRKLNQYVRPLAFPLPR
FT                 IDSIIHKLXGSKYITCLDMASGYHQVQLDDESREKTAFMTADGLFQWKVMP
FT                 FGVSSAPTAYSQLIHLTLNGIIDDHLSVYLDDICVFTTDFESHLSKLEQVF
FT                 QKLRHEGLTLKPSKCKIMFSEIRVLGYKATRDGIMPTDEHIAGLTRMRSPR
FT                 TRKELQKILGFFGFFRRFLKNYAIIIRPLQKLLTKGVKFEWTFEHEDIISQ
FT                 LKTMLTTAPVLAHCTDDGQLVLRTDSSADGIGCCLSQIQEDGIERPLCFIS
FT                 RALNNAEKSYTTTMQECLAVAWGLQKVRHLIFQRNVKVYTDHSALCYLVKG
FT                 AKNNLPSKLTRLLLAISEYDTDFYHVKGSANHVGDTLSRFPVDEPDPENPN
FT                 VVDLPILAMDTAAMKEMQETDPEISTIRSKCLQQKLTGKLKHAFILDDVLM
FT                 FQSAQQQNPVLIVPKRLRQSILTEFHDDPISSHLGFFKTYHKIAARFYWPG
FT                 MRSQIKQYVRTCEKCQKRKLVKRRPAGLVQPFPIPEHPFTTIGCDLMGPIN
FT                 RSKNNHRYIITVTDITTRYLECAPLKNGTAEEISNFLVNRIFLRHGTPHNI
FT                 ITDLGTAFCGELMTEVNKFMGITHNRTTKFHPASNGATERPHATIMDAISF
FT                 YVSSGKDDWDQFLPHIQFAINSAVHEGHYFSPHYLLYAQEPTLPAEVELGL
FT                 PRYCSVAEIAEKVKLAREIAVNRLNKSQQRNAKYANAKREDVTYKIGDLVL
FT                 VRKFVNVKGKSKKLFFNWIGPFRIVEKSSQNDVNYTVEAVHGKRKYRHVIH
FT                 VEKLKPYHERDDMFSTIRTTSNRQPIIS"
XX
SQ   Sequence 7337 BP; 2337 A; 1762 C; 1399 G; 1825 T; 14 other;
     aaatggtgga gatggctgcg ctctctgaaa gttaaaagtg atttgtgtaa aaacttatcc        60
     aatgcccaag aaaactgacc aacaaaatgt gacagaaaga cgcagatgca gacgcttaca       120
     caacttacca cctgaattta gtgcttcaca attaccacca attcgaagtg cctcaaactc       180
     aacaaaatca acctcagctt ctacaccagt gaccagtgca tcagaaagtg agtcctttga       240
     cgctgacaaa caatcagtct caactggccc cgacgacgta ttttgtacgc ccaccaaagc       300
     aactccaaca caaagtgcat caagagccat ctcagctgct ttcgctcgtg ccaacactcc       360
     cagtttatca gctcagcgtt ccaaaattgt gcaagactgt tttatcccta atcttgaagc       420
     tgatttcgaa gatgactcca tgcagaatgg aacaccgctc cgtggaataa aactaacgcc       480
     cactctatcg agattacgct ccaaagccct agcagttatc cgacgcctgt caccgcccaa       540
     acaaaacgac aacgaggagg aaacgtgtac cagttcaaac caacaacaac aacagccaca       600
     taatattatt gaaaagcggg atcgtgaggg taatattctt tctatttctt acacttacca       660
     gttctcatca gcatccaaaa cggcggaatc acgaccgtta tcatcagccc ctgtcgacga       720
     caacggggat cgtgacattt ttgacgacac actaccaact gctacaccac cgccaccacg       780
     aagaaatctc ccaccaccac aaatccctga gctctcagcg tctgcacgcg gtcgggcatt       840
     tagtcaagcc ctgttaacgc agccgttaca acactttagc caaacgccag ccctggacgc       900
     atactttcac ggtacgctcg gaaacgccca tccacaagac aagacaactg tagaaaacgc       960
     ccactcacca catcacgtta cctccaaccc acaagacagg agtacctcac aagcacggtc      1020
     tgcacaaaat aatagtgacg acgcacaaga cgacgcccac gttcctgccg acgacaacaa      1080
     cgaaaccgat gataaccagc agcaccatag cgaatccgtt gtgaactctg aaccacgaaa      1140
     ccgtgcgcgg tcagcatctg ackgtaattt gaatttactt aacatacgtc ttgttttctc      1200
     gtcatccagt agcagctcag aatccctcaa cagtttagca tccgacgact ctgacaacat      1260
     gcctgactac acattgatgc ccaaatatga taagccatta acggttcgtg acgtgaaatt      1320
     attcctacaa caatttcgtc tatgggctgg acaacagaag ctaacagatc ctgcaaagaa      1380
     ggcgtcactc atccttgctt ttaccaatga ggacgcacga cattggctac tcttggcttc      1440
     agatcaagtc cacaacaacg agatatcttt tgaagctttt gtggagttgt tcctcaataa      1500
     tgcaccaata actacgacgt caggtactga aatttttaaa ttattatcgg agccaccagc      1560
     tccaaatgac ttggcatcat catacgtttt gcgcctccgc tacaaaattg gagatgattg      1620
     gactgacgcc caccaaaaag attatgtggc tatcatcatg gataacctgc cgaaacccgt      1680
     tgcctcttat ctcgccttac ggggaaacag acctgaaact tttgaggaat tactcgctgg      1740
     cgttcgcgag tacgagcaga caggacgtga ttcaacagca gcagcaccac aacagcacgt      1800
     agtcaaagtc gaaaatcaag ttgcttcaac cagtatccaa ggtaaccaga caattgctga      1860
     catgcaatcc ataatgcaaa ttttactgcg tgaagttgcc gaaattaagg cagtcaacac      1920
     ggatcctgtc ccctcacaac amcaacgccc tgaccagaaa tctcaacctg ccccaaatca      1980
     gcgtcaatcc cagcaaggtg gacaacgtcc aaccatttat tgttactatt gtaacgggcc      2040
     taatcacatc gagcgtgatt gtggcatcaa acgccgagaa cgaggcggcc accgtggagg      2100
     ttcaagagga ggaggaggag gaagaggacg cggccgtggc ggccaatcat ggcaaaatta      2160
     caatggacat ggtcaacagt accagcagca gtatcaacag cagtacgggc aaggccctca      2220
     tcaacaaaat tggcgtgctc caccacagga tcccggttac tatcaacaag cagcacctca      2280
     acttaattgg caaccagttc cagcaatcca gcaacagccg actccctaca tcacttatcc      2340
     gcccagcaac gctccgggaa actgattatg gcacaggaaa ttaatactga tgctcgtgcg      2400
     cctgtgccta caacagaaaa taatgcacat aagaaaaatg aagaagcatc aatttttacg      2460
     aatgtttttg aagacgccca ccataacaat aaccacccac ctacccaatc taatttacca      2520
     gtcaatagag gtccaaccgt agagatccag atccacaaaa acaagtacac agctctggtc      2580
     gactctggag ctgttacctc cctcatttca aaagaacttg ctacaaactt cacaaaaatc      2640
     caaaataatc atttggtgct tcgatcaata tcaaacaatt taattgtgga ccacggtata      2700
     gcactagtcg agtttgaatt ggcagagaaa atctttacct tcccgatggt catcgtcgac      2760
     gttccaaaat gtgaagctgt tattggcgat gattttctac agacattttg cgcagttatt      2820
     gatcgagaca aaaatcagct ttactcttca aattacaact ggtccacccc gctttcgcct      2880
     aaacaacaca tttgggatag atatgggatt agtacgcaaa ttaaatggga atcgaagaca      2940
     gaaattcaac agcaatcagt tcaagcaaat gaaaataatg aaccaattta cgcagaagta      3000
     cgtcacctcc aaaaagcaga atccattcct cactggtacc ttcgtctctc caaatcagtt      3060
     tcactgcctc caagaagtca agtacacgtt ccagtttgta ccgtgggatt atcagacacc      3120
     gacattgccg ttatcactcc ttcaaatcga ctgatgaaga ccaatgacat actcacccca      3180
     cacatgatta tcagcaaaga aacgaaatca gtcgtcctca ccaatctctc caatgaaaaa      3240
     aagttcctct gcccaaaaac aagacttgga aaattaacaa acctgatcac agctgatgac      3300
     attttacctt tctccacgaa gaaaactaca tacatacatt ctacagcaac ttcaaatcca      3360
     gtgccggcaa cagacctgaa gaaaaagtac aaagatatta aaattggcag tgatgttcca      3420
     gacgacgtaa gaggaaaaat ttacaattta atcgagaagt atgaagatgt ttttgccttt      3480
     gaccctgaga agcttggaca agccaagcat tataagtacc acatcgagac tggaaacgcc      3540
     cctccgcagc gaatgaaacc attcaacctg actgaagccg agcacaaggt catcaaagaa      3600
     aatgtmgcag aattactcca aaaggatcta atcgagccca gtgactctcc atgggcagca      3660
     gcaccattcc tagttccaaa ccgcacagaa gatggaaaaa twaaataccg ctgtgttttt      3720
     gacttccgca agctgaacca gtacgtacgc ccacttgcct tcccacttcc aaggattgac      3780
     agcatwatmc acaagttamg mggctccaag tacatcacct gcctcgacat ggccagtgga      3840
     taccaccagg tccagcttga tgacgaaagc agagagaaga cagcstttat gacagcagac      3900
     ggactgttcc agtggaaggt catgccattt ggagtgagct cagcgcccac mgcttactct      3960
     caacttatcc atttgacgct gaatgggaty attgatgacc acttaagtgt gtatctggac      4020
     gacatctgtg tmttcaccac cgatttcgaa agtcacctga gcaaactgga gcaagtattc      4080
     caaaagttgm gacatgaagg actgaccctg aaaccctcaa aatgcaaaat aatgttttcg      4140
     gagatacgtg ttttaggata caaagcaaca cgtgatggca tcatgcccac cgacgagcac      4200
     attgctggtt taacacgaat gaggtcaccc cgtacgagaa aggaactcca gaaaatcctt      4260
     ggcttttttg gattttttcg tcgatttttg aagaattacg ccatcatcat ccgcccactt      4320
     cagaagttac ttaccaaagg agtgaagttt gagtggactt tcgagcacga agacataatt      4380
     agtcaactta aaacaatgtt aactaccgct ccagttctcg cccattgtac tgatgatggt      4440
     caactagtcc ttcgaaccga tagcagcgct gatggaatag gttgttgtct tagccaaatc      4500
     caagaagacg gaatagaacg cccactttgc ttcatcagcc gagccctgaa caacgccgaa      4560
     aaatcctaca ccactaccat gcaagaatgc ttagcagtag cctggggact ccagaaagtt      4620
     cgtcacctta tattccagcg gaacgtaaaa gtttacacag atcattcagc cttatgttac      4680
     cttgttaaag gagcaaaaaa taaccttcca agtaaattaa ccagattact tttagcaata      4740
     tcagaatatg atacagactt ttatcacgtc aaaggatcag cgaatcatgt tggtgacacc      4800
     ttatcccgat ttccagtaga cgagcctgac ccagaaaacc ctaatgttgt ggacctacct      4860
     atcttggcaa tggacacagc agcaatgaaa gagatgcaag aaactgaccc tgaaatttct      4920
     actatccgct ccaaatgtct acaacaaaag ttaactggaa aactgaaaca cgcatttatt      4980
     cttgatgatg tgctaatgtt tcagtcagcc caacaacaga atcctgtttt aattgttcct      5040
     aaacgcctac gccagtccat tctcaccgag ttccatgatg acccgatctc atctcatctt      5100
     ggattcttta agacgtacca taaaatagca gcacgttttt attggcccgg catgagatcc      5160
     caaataaaac agtacgtgag gacctgtgag aaatgccaaa aacggaaatt ggtgaaaaga      5220
     agaccagctg gattagtaca gcctttcccc attcctgagc acccgttcac tacaattggc      5280
     tgtgatttga tgggaccgat aaacagatct aaaaataacc accgctacat catcaccgtc      5340
     accgacatta ccacaagata tttagaatgt gctccgctca agaatggaac agcagaggaa      5400
     ataagtaatt tccttgttaa ccgcatattt ctgcgacacg gtactcctca caacatcatc      5460
     accgaccttg gtacagcgtt ttgtggagaa ctgatgaccg aagtcaataa gtttatgggc      5520
     atcacccaca accgcaccac caaatttcac ccagcaagta acggagcgac tgaacgacca      5580
     catgccacca tcatggacgc aatctctttt tatgtgtcct ccggaaagga cgattgggat      5640
     cagttccttc cccacattca atttgccata aactcagcag tacatgaagg tcactacttt      5700
     tctccccact acctgcttta cgctcaagaa ccaacattac ctgccgaagt agagcttgga      5760
     ttaccccgtt attgttccgt tgccgaaatc gctgaaaaag tgaagcttgc acgtgaaatc      5820
     gcagttaacc gtctaaataa aagtcaacaa cgtaacgcca aatatgccaa cgccaagagg      5880
     gaagacgtta cctacaaaat tggagatctt gtgcttgtcc gtaagtttgt caacgtgaaa      5940
     ggaaagagca agaagttatt ttttaattgg atcggcccct tccgaattgt ggaaaaatca      6000
     tcccaaaatg acgtcaacta cacagtggaa gctgtacatg ggaagcggaa gtacagacat      6060
     gtcattcatg tagagaagtt gaaaccgtac catgagcggg atgacatgtt ctccaccatc      6120
     cgcaccacct ccaaccgaca accaatcatc agctgactac ccgcaacctg tacagagtca      6180
     accgaaaagt gctccagaac cgacaccaat tcagcgtgaa agtgttccac cgtttgcagc      6240
     agatgaccgt gatcctgtct acaacttgcg accaagaaaa gcagtaaaat actcaaaatg      6300
     agtgaaaggg ccctacttat ctactttttg cgtaatttac tgcgtgtgat cctgggatga      6360
     tgacckgcta ccaagtttcc tgttgtttac tgccgttcga cgctgccatt tcataatgag      6420
     ctctatgaaa tgatggccga aatgaaattt accgctgaaa tgatgacgac cagacgtgaa      6480
     atccggatga ccgttgatga tgaccataaa acgcctggct gagaattacc tacctacctg      6540
     tggccagaag ctagctttgg attcgacttc ttttaataac ggtaccataa gaaatatata      6600
     tattagttat ttgtagtttt tttatgatat taatatgcct tgtgaaataa ttttaagaca      6660
     attactgtta aattatatgg ctgaattgat acataatatg ttgaatgttg ataagaatgt      6720
     aatgaataat gttttgttga attactgttg ttgcattgta agaaatattg tacgaatgac      6780
     ttgaaatgat gaattaatct tggtaaatta catgaattac gtgataacta tataatgatg      6840
     aattgcctta ttgaatgatt gtaatttgag agtgttttat gtacgtgtaa ctttgttgac      6900
     catgaatttt gatgataatt tatgctaccg tactttgttg tatgtacata cctacaaaat      6960
     atgagaatgt actttgttga tgatacatga taatgattga atttacttgg atgttatact      7020
     atttgatttg ttaagaatta tatttgagtt tataatattg ttagttaaga taagacatgt      7080
     tgtttaacgg tttgatttga ggattcaggg ataattagag acatatagga aacgaccagt      7140
     gagtactatt tttgtctcag agccatgttt tctccaactg gtttatttcg tcaaaccaac      7200
     caatatgtcg aatataaaaa ttataataat tgttacacgt agacattgct ttaaaataat      7260
     atgtatgtta aaaatattat gtacgatttt gtttagaatt tatctgtgtg gacacagata      7320
     ttttttgaga attggcg                                                     7337
//
ID   Gypsy-19_SiCu-LTR repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   16-FEB-2021 (Rel. 26.09, Created)
DT   16-FEB-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-572
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5096-5096 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 572 BP; 196 A; 111 C; 96 G; 167 T; 2 other;
     tgtcacgtat ttatatatta tgtagagcst aaaatatgtt actatattga atttgtctca        60
     aatgctaatg actagtttca attgcttaat ctaataactg gaacccttgt aattggtttc       120
     aatagatata atttgcctaa aatagctaaa tagatttagc cttgactgaa gagacagcga       180
     atgaactttg tctcatgtta aatgatgaac atgtgcaaga agccatgcca tgccaccacc       240
     tctcacaaaa tagattataa gcccgtggct cgtagcttct cgacatcaga tctttgtaga       300
     ccaccgaacc gacaagacag atctgtttga ctcgttgtag actaaccttg atttaccctt       360
     gaataaatgt acatacctaa acttacgctt gagctggaga acgagactgc acattattta       420
     ctattggggc attgtgagaa taccgaaccg aaactcataa tatttagtaa mgagctatgc       480
     catcattagt ttagctaact aaagtcacgg taaacctaaa tgctacatcc ctaacatcat       540
     aataaaaact agagacagaa agaaccgtga ca                                     572
//
ID   Gypsy-19_SiOr-I repbase;    DNA;    INV; 5671 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5671
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 355-355 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           486..1835
FT                 /product="Gypsy-19_SiOr-I_1p"
FT                 /translation="MDYKMNINYLKKDMLMHELSCRGIPVDDTKTVEDMRS
FT                 ALRPLLSLEKKNKPLTYPSYNLSVTEEFTQIHKILSDVKSAISNLLDGNAT
FT                 QKFQSAQSRLVHLLRRTDRIPILNISAEQAQERSSLLADILATLDTLETTS
FT                 KEEPNLSHLFQDIRLEEEPLSESDESIEHISPNNSTRVPTIRATNRMNYSR
FT                 NIDKWNLKFTGDNKCLSVHNFLERVDELRRARNVTESELFDSAIDLFTGKA
FT                 LLWYRSNVTRFADWTSLSKLLRQHFEPPDYRPRLFKEILERTQDVSEGIID
FT                 YLSCMNALFRRYGGLPETTQLDIIVRNLSPFYSTQLSVVNTIEELEQECLK
FT                 LEVKKYRAETYVPPSRKRQQFVEPDFAYVSLDVAAQTSNVSDLSNDVAELC
FT                 STPMNIVCWNCRKPGHVNRNCTSPRKTHCFRCGTPDVTIRSCPKCSSSGND
FT                 LRERQ"
FT   CDS           1808..5011
FT                 /product="Gypsy-19_SiOr-I_2p"
FT                 /translation="LGKRFKGTSIGRVTASQVKSVTTNDVDFPNKIILDYI
FT                 ISHAQGDQRPYLKIEILGCSILALLDSGASRTLVGLPGYELLLSLGLKLQK
FT                 ESVTCTVANGQHCSSIGFIQTPITLKSKTKILDIIVLPELSHQIILGIDFW
FT                 RAMEIVPDMRQDVWHFTDQSESSFVDICSVQSVKSLSELEKSELNNLIERK
FT                 FDSMGTEFGCCKVAPHDIELEPGTKPIKQRYYPVSPHKQKIIDDEVEEMLK
FT                 LGVIERSKSPWSSPVCLVHKKDGSYRFCIDFRRLNAVSKKDAYPIPYISAI
FT                 LDRLRNARFISSIDIKSAFWQVPLTESCKEYTAFTVPGRGLFQFRRMPFGL
FT                 TNAPATWQRIIDTILGPELEPYVMVYLDDIIIISSEFSDHLKLLETVFDRL
FT                 KEAGLVVSKEKCHFCKPELKYLGYLVDAKGLRPDPEKVEAIVNIPPPQNIT
FT                 EIRRFIGTASWYRRFVPNFSTLLSPILHLTKKNVKWSWTPDCQKSFIALKE
FT                 CLVTAPVLTCPDFDKTFYLQTDASSYGLGAVLTQKFEDGEKVISYLSRSLT
FT                 KQEMKLTVTEKECLAVIWSIEKLRHYLDHVHFKVITDHASLLWLHRLKDPQ
FT                 GRLARWQLRIQQFDFEMIHRKGKENIVPDFLSRAVPVQSNSIQLNVMEYTP
FT                 EVTDKWYTEMKNKVQQYPEKFPVWRIENDRLYKYVKSVIPELNDLSEEWKL
FT                 VVPKDHRKQILQRFHDIPASGHFGTYKTYKKILHSHYWPKMKSDIAKYVKS
FT                 CHVCAQHKVEQKRPAGLMGERPEISVPFQVISLDYIGPLPRSKQGNCYILV
FT                 ISDYFSKAVFMFPCRKATSKSLIKHVEDVFLTYGTPAYLICDNGAQMKSKE
FT                 FKKLCELYHTKIFYTSSYNPRANPTERHNRVIKTMIRSYIQKDNHRTWDVH
FT                 LSELGCAIRSAPSETTGYTPNRILFGREHVLYGDNHLLKLQENRKNIDTYV
FT                 KDRQVGFEKLYEQIKNKIQSARTRQANHYNLRRRPLQFNVDDKVWRKNKVL
FT                 SDASKYYSAKLAPGFVGPFLVKRKIGSWTYELQDELGNSKGIWHVQELKPF
FT                 YDPSFAIDECS"
XX
SQ   Sequence 5671 BP; 1783 A; 956 C; 1023 G; 1909 T; 0 other;
     aattttggcg cccaacgctt ggggcctata aaaaacttgt tttttttact ctgaccagta        60
     ccttgaattt ttttgtatat ctgctttgtc ctgtattgaa gtcaatttaa ctgaatactt       120
     taatagttat tttttttctc tcttgaatcg aacttgaatc aatatagtat attattttta       180
     ttattcatgt atttgcgttt tattatctgc tggaatatta ttttttatat ttgatacgta       240
     ttgaatagtt gagatttttt ttttactttg atatagtacg ttgaggaata tttatatttt       300
     cctaatatac ttaaccatca ttaaaatata tttttaatat ttattagtta ttaatatatt       360
     gataattttt agtattatta cttattgata atactgtgtt aatttatata tctttagttt       420
     tttgtacaag cttaattggt ttatacgtat ttgatctgtt ttgatttttc tttgatattt       480
     gcgcgatgga ttataaaatg aacataaatt atctcaagaa ggacatgtta atgcatgaac       540
     ttagttgtag gggtattcct gtcgatgata ctaagacagt ggaagacatg agatcggcat       600
     tacggccatt actatctcta gaaaagaaaa ataaacctct aacatatccg tcttataacc       660
     tttctgtcac tgaagaattt acacagattc acaagatttt gagtgatgtt aaatctgcta       720
     ttagtaattt acttgatgga aatgctactc agaaatttca atccgcccag tcccgcttag       780
     tacacttatt acgccgaaca gatcgtattc caattctgaa tatatctgct gaacaagctc       840
     aagaaagatc ttctctgcta gctgatattt tagctaccct ggacacgtta gaaactactt       900
     caaaggaaga accaaattta tctcacttat ttcaagacat taggttagaa gaagaacctc       960
     tatctgagtc agacgaatcc atagagcata taagtccgaa taattcaaca cgagtaccaa      1020
     ctatacgagc tacgaaccga atgaactact ctcgtaatat cgacaaatgg aatttaaaat      1080
     ttacaggtga taataaatgt ttatctgtac acaatttttt agaacgagtt gatgaattac      1140
     gcagagcgcg taatgttact gagtcagaac tatttgattc tgccatagat ttatttacag      1200
     gaaaagcttt gttatggtat agatctaatg ttaccagatt tgcagattgg accagcttat      1260
     ccaaactatt gcgtcagcat tttgaaccac cagattaccg accaagatta tttaaagaga      1320
     ttttagaacg gacgcaagat gtttctgaag gtatcataga ttatctatct tgcatgaatg      1380
     cacttttccg cagatacgga ggacttcctg aaactactca gttagatatt atagtcagaa      1440
     atttgtcacc attttattca acacaactgt cagttgtgaa tactattgaa gagctagaac      1500
     aggaatgttt gaagttagaa gtcaagaaat atagagctga gacatacgta ccgccttcca      1560
     ggaaacgcca acaattcgtt gaaccagatt ttgcatatgt ttctctagat gtcgctgctc      1620
     aaacctcgaa tgttagtgat ttatccaatg atgtagctga actctgttca actcccatga      1680
     atatagtttg ctggaactgt cgtaaacctg gacatgtaaa cagaaattgc acaagtccaa      1740
     ggaagaccca ttgttttcgt tgtggaactc cagatgttac catccgcagc tgccctaaat      1800
     gctctagctc gggaaacgat ttaagggaac gtcaataggt cgtgtgaccg cttcccaagt      1860
     taagtctgta acgaccaacg atgtggattt tccaaacaaa attattttag attacataat      1920
     atcacacgca cagggagatc aacgtccata tttaaaaatt gaaattttag gttgttcaat      1980
     attagcttta ttagattctg gagcatcccg aactttagtt ggattaccag gttatgagtt      2040
     acttttaagc ctaggtttga agttgcaaaa agagtcagtc acctgtaccg tagcaaatgg      2100
     ccaacattgt agcagcattg gttttattca gactcctata acactgaaaa gtaagacaaa      2160
     aattttagat attattgtac taccagaact gtctcaccag attatattag gtattgactt      2220
     ttggcgagct atggaaattg tccccgacat gcgtcaggat gtctggcatt tcacagacca      2280
     atcagaatcc agttttgtag acatatgcag cgtacagagt gtgaagagtt tatctgaact      2340
     tgaaaaatct gaactgaata atttaattga gcgaaagttt gattctatgg gaactgaatt      2400
     tggttgctgt aaagtggcac cacacgacat tgaactggaa cctggcacga aacctataaa      2460
     acaacgttac tatcctgtat caccacataa acaaaagatc atagatgatg aagtagaaga      2520
     aatgttgaag ttaggtgtaa ttgagcgttc gaagagtccc tggtccagcc cagtatgttt      2580
     agtacataaa aaagatggtt catatagatt ttgtattgac tttcgccgcc ttaatgctgt      2640
     tagtaaaaag gatgcgtatc ctattccata tatttcggcc attctagatc gtcttagaaa      2700
     cgcacgtttt atcagttcaa tagatattaa gtctgcattt tggcaagtgc ccctgactga      2760
     gtcctgtaag gaatacaccg cttttactgt acctggaaga ggccttttcc agtttagaag      2820
     aatgccattt ggattgacaa acgctcctgc tacttggcaa cgtataatcg acactatttt      2880
     aggtccagaa ttagagccat acgttatggt ttatcttgat gacataatta ttatatccag      2940
     tgaattttct gaccatctga aacttttaga aactgttttc gacagactga aggaagcagg      3000
     cttagttgtg tcaaaagaaa agtgccactt ttgtaaaccg gagttgaaat atttaggata      3060
     tttggtagac gccaaaggac taagaccgga tcccgaaaag gttgaggcaa tcgtcaatat      3120
     tccacctcca caaaatataa cggaaatacg ccgtttcata ggtactgctt cgtggtacag      3180
     acgcttcgta ccgaattttt caacattatt atcgccaatt ttacatctaa ctaagaaaaa      3240
     cgttaaatgg tcatggactc cagattgtca aaaatcattt attgccctga aagaatgttt      3300
     agttaccgcg cctgtgctta cttgtcctga tttcgataaa acattttatt tgcagactga      3360
     tgcttcttct tatggtcttg gcgcagtttt aacacaaaaa tttgaagatg gagaaaaggt      3420
     aattagttat ttatctcgat ccctaactaa acaggaaatg aagctcacag taaccgagaa      3480
     agaatgcctc gcagtcatat ggagtataga aaaattgaga cattatttag atcatgttca      3540
     ctttaaagtt attacagatc acgcctcgtt attatggcta catagattaa aagatcctca      3600
     aggacgatta gctcgttggc aattgagaat acagcaattt gattttgaaa tgattcaccg      3660
     caaaggaaag gaaaatatag ttcccgattt tctgtcaaga gcagtaccag ttcaatctaa      3720
     tagtatacag ctcaatgtta tggaatatac acctgaagtc actgataaat ggtacactga      3780
     gatgaagaat aaagtacaac agtatcccga aaaatttcct gtatggcgca ttgagaatga      3840
     ccgtttatac aagtatgtga agtctgtcat accagaattg aatgatttgt ctgaagaatg      3900
     gaagttggta gtcccgaaag atcatcgtaa gcaaattctc caacgttttc atgatattcc      3960
     tgcttcagga cattttggaa cgtataaaac atataagaaa attttgcata gtcactattg      4020
     gcctaaaatg aaatccgaca ttgcgaaata tgtcaaatct tgtcacgttt gtgcacagca      4080
     taaagtagaa cagaagagac ctgcaggatt aatgggtgaa agacctgaga ttagtgttcc      4140
     attccaagtc atcagtcttg actacattgg acccttacct cgctctaaac aaggtaattg      4200
     ttatatactt gtgatttccg attacttcag taaagccgtt tttatgtttc cttgtcgcaa      4260
     agctacctca aagtctttga ttaaacatgt agaagatgta tttttaacgt atggaacacc      4320
     agcttatctg atttgtgaca atggagcgca aatgaagtcc aaagaattta aaaaattatg      4380
     tgaactatat catacgaaaa tattctatac ttctagttac aatcctagag ccaatccgac      4440
     cgaacgtcac aaccgggtca ttaaaactat gataagaagt tacattcaga aggacaacca      4500
     ccgaacttgg gatgtgcatc taagtgaatt gggatgtgca attcgttctg cccctagcga      4560
     aaccaccgga tacaccccga accgtatatt gtttggacgg gagcatgttt tatatggaga      4620
     taatcatttg cttaagcttc aagaaaatag aaagaatata gatacttatg tgaaggaccg      4680
     tcaagtaggt tttgaaaaac tttatgagca gatcaaaaat aagattcagt ccgctagaac      4740
     tcgtcaggcc aaccactata accttcgaag gcgaccatta cagtttaatg ttgatgataa      4800
     ggtttggcga aagaataagg tattatctga tgcatcaaaa tattatagtg ctaaattagc      4860
     tccgggattt gtaggaccat tcttagtaaa acggaaaata ggatcctgga catatgagct      4920
     acaggatgag ctaggtaatt ctaaaggtat ctggcatgtt caagaactta aaccgtttta      4980
     tgatccgtcg tttgcaatcg atgaatgtag ctaacatcta aaccaatttt gctttatgta      5040
     atgtaattat gatggtatat tttttttatg tattaattct ttcttcacat ttatctcgcc      5100
     tagatttttc tgattaatta ttgatttata tattattata attaatttct tttcctcttc      5160
     tgcattttct tagatagcta tataagtatt tgattgtgta agtatttgtg aatatttctt      5220
     gtgaaccaaa tttgatctat ctgtattatg atttttatat ttttgtataa tgatttaatc      5280
     taaattatga tttaactgaa ccgttgttca tgaatcaatt tctaactttt ctcattatta      5340
     attttatggg tttctgtagt aatttatttt ttgatttgac ggtgtgcctt ctaccgaatt      5400
     ttgcttttgt tatctttgcg taaactaagt gtttttttta ttggcctttt ctttggctat      5460
     ttatgatttg gatttttatt agcattttct taattttcaa ttcaaactta cgtcgaagta      5520
     atatattatt cacttgttat ttatattatt ggtattaatg gtgtttacat tcagaaacag      5580
     gacgagtatt ctactatttt tgactatgtc ttaattatcg tcgtttcgct ttttaatcgt      5640
     agcttctctc ctctgttagg agaggggggg t                                     5671
//
ID   Gypsy-19_SiOr-LTR repbase;    DNA;    INV; 2224 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-2224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 388-388 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2224 BP; 590 A; 365 C; 327 G; 942 T; 0 other;
     tgtaacagtc caaatttagc tttaactagg tttaaaaata tataccaatt tttcttacaa        60
     gttagatcaa actcttattt atgctgataa ataaatttat tgcatttaat ttttataaac       120
     aaatattcat tacagctata tttcattatc tttcttactc tcctttgctt aatttatttt       180
     gctttccatg ccatatctca agtcaagtca gtaatcaatc agtaatctaa aatataatta       240
     aaatttatta tctaatgcta atataatcaa attcaccaaa atattacctt taatttctgg       300
     acttgtttat gtttctgaat gttagcctat ttgccgtaat ttctagtagt tctgctggta       360
     ctgcttgccc ttgtattatc ttagaagatt tcctatcaag tgtggattgt ctctaaaata       420
     ttatttgatc ctatatttca ttatagagct caaaatgaag ttatttacct gcatattttt       480
     ttgaaattta tcatttgttt attttctgca aattgtaggg ttaacaatta ttattaataa       540
     tgtcatttat atttgaattg ctcagatcag ttgagatgcg tgaattcggc gcacacacgc       600
     tgttgtcagg ttgggcagta cttcctttag gttctgatgt ttgtattttc tgataattat       660
     tgattgcata atcgacatcc tttccgtaat attgtgtatg catcgtcacc ggcataaggt       720
     ttggtatgtt tgtgtttgaa tggttattgg aatttacttt taattctaag taatgtttat       780
     tttggcaatg tttctaaatt cccagaatat taaattgcaa ctttgcagta taagtcaaat       840
     ttcttcgagc ggaactctat ctgatcgatg taggtttccc atttttccct tcagcttcaa       900
     agcaggtgtt ttagtcagtg taatttgttg gaattttcct gttttacccg tttgttgggg       960
     ataatcactg actagaacta taagggatac ttttgctgtt tgagttgtac cttaccttta      1020
     aaaagtatct ctgagccgtt ttatacggga ttttaatctg ttttaatctg ctcgtggctg      1080
     gtaagttttt ttgatcgcca ttttgtctag tgtgatttgt actattcaaa ttatttctta      1140
     acaggaaagc cttttgattt atttctttgt catcgtcgat tttcttggga agaggaactt      1200
     aaaaccacca cctgttccag taatttctgc tttctgaatc cagcaatttg aacatccatc      1260
     tattagaaaa aaaactagat tttttgtgaa gcccagcaag gtaacctttt atgatatttt      1320
     ttatatttct acagttgaaa cgtgttttga ttatttaatt aattatagct gtgtttcttt      1380
     tgtttcaatc tatcccttct aggtaacttt ctttttattt cgtaaaccta ataccgctct      1440
     cggttttagg gctttttttt ggaccaggct tttaagacca ggatttttcc accaggcttt      1500
     gagaccagaa cttttttgga ccaggatttt tctttttata cgaggatttt tctacgaagc      1560
     atttttctgg cttgcttttt ctgacagact ttttccagta cgtctctctg gaagtggtat      1620
     ccttctgaag cactgagctt ggcaactacg tcgctggatc aggtttgaag cagaaacaag      1680
     taaacgttta ctgaaatttt atcttcccct attatttgtt ttcccttttc ttacttacct      1740
     ttttttatct tatattgatt caaggttcca gagttcaagg tacatacata cggttcagtt      1800
     ttcaattttt aattaaattt agtatataca acgtcatcaa atttggttca ttttttttaa      1860
     tttaatatca ttatacaata ctctattaat ttatcttagt gtttcattca tccctttaat      1920
     tttttatctt tctaatattt tttttaataa caagtcttgt tagattccaa gaatatcttg      1980
     gggttttctg gcttatctgt gcaaagccag tggcgtttaa aacccacccc atctcttcgg      2040
     cagagctagg gcctatttgc acgcacactc cacagtttaa taagacgttt tttttttatt      2100
     tatttttttt cggttctcta taaattttta atttcataat ttttcttgtc aatttaataa      2160
     ttttaaaatt taacaattta acattttttt ttaaatcaat ttccttcaaa ggaaacgcgt      2220
     ggca                                                                   2224
//
ID   Gypsy-19_SpEx-I repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4129
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4088-4088 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..4127
FT                 /product="Gypsy-19_SpEx-I_1p"
FT                 /translation="MAMSNEQFQQLLSTITANKRGTFASCTFTYDGKKNSD
FT                 AVEAFLAAATVFKSTEKISDSDALQSLPLLLRDEAAVWWQGVKTGVTQWED
FT                 FCTKLRHTFAPRKPTFMVYYQITHEVQEANVTTEAFIARKRSLFSLAPPPA
FT                 FTESQQIDLIFPLIRLDIRNRMPRDTVPTFYQLLETARGIEETLHEYAASS
FT                 ETGETGNAPGKKVKIRCTFCKNLGHTADVCRKKKRAEGTLSATVKDVSEGQ
FT                 TQAPSPSQPKFSCYGCGAPGVYRSNCSTCKKSSSPVKKENVAFCAVDAPEE
FT                 THSRPVVFVEVDGQKGTAFMDTCAKMSVASYSLYQSLLKSGCKFIEKTVDL
FT                 TLADGIKKEQVVLVCKAVVNLNGRNIATRFIVLQEARDNRTLLGVDFLQKA
FT                 GVVINMPQYTWSFIDEPDLHYELYPEEFTIFESTIIKEMMTLPSPLSAMTV
FT                 TDSEDTASVCNAMPTPPSTPPPAIMTAGEPETPTEDQQGITDYKLALIDLT
FT                 STPPSKKKPRLFDGYSPSFTDFMMRDAQINVHRENAELSPQSNSLFDANNW
FT                 DVRIDSIDVVAHITPDQDKLVNQLLEKNNDVFNTKREPTKLIEHTIKTVDD
FT                 KPISVPPYRLSPPRKEALQREIKAMLADGVIQPSASPWAAPVVLVPKANGT
FT                 IRVCIDYRRLNAITVPDPYPIPRIDDLLHEAKPTPYMSLLDLKAGYWQIGV
FT                 REEDQDKTAFITPFGIYKFTRMPFGLRNAPATFQRLIDRMRVGMPDVKLLA
FT                 YLDDLAIFSQTFEHHLEDLQKVFNQLKEFGLTANRGKCHFCCSTIKYLGHY
FT                 ITPNGLQVDPEKTAAIAKLPTPSNLKHLVAFLQTCSWYRRFIENFAKIAEP
FT                 LTRLTKKNVSWEWTEEQQNAYNELKNRLSSAPILRQADETVPYVIKSDASS
FT                 YALGAVLVQGEGEDEHPVEFASRLLTSAERNYTTTEREALAVVWAVSKFRG
FT                 YIEGLPVTVITDHQALKWLMSLKTPTGRLARWALQLQAFDITIKYAPGKTN
FT                 VVADFLSRPPCNNETVGSCGICTVTIDMPIRSPAEIRDEQLKDERLQQIVK
FT                 DLESLNNDEKAVYWSNKGYLMNNGLLYRHSPHSDSEEAQLAVPEHEWANIL
FT                 STYHDNPLAGHYGSDKTYRRISTRYYWTGMRKYIESYTKNCLECQRYKSSN
FT                 QKPAGLLQTTVMNQRFEVISFDLFGPLPTSLDGKTWIFIVEDVATRWVELF
FT                 ALHQATAEKCAMTLINEIFLRFGFPRRMISDNGPQFVSAVMQQVAFTMNIK
FT                 HAFTPVYHPETNPVERKNRDLKPQLAILVKDKHREWPEHLPSIRFAMNTAS
FT                 SLSTGFTPAFLTFGRELRTPDDTTHDFRKILQSENFVP"
XX
SQ   Sequence 4129 BP; 1198 A; 1022 C; 987 G; 922 T; 0 other;
     atctggcgca caacgcgagg ccgaaccaag gcattaatat tgaaaaccta cgtcgtcttc        60
     cacatcgcga actcaagatg gccatgtcta acgagcagtt ccagcaactc ctgagcacca       120
     ttacggccaa taaacgagga acatttgcgt cgtgcacctt cacatacgac gggaaaaaga       180
     actcggatgc agtagaagct ttcctagccg cagctactgt atttaagtcg acggagaaga       240
     taagcgactc agacgcactg caaagtctcc cgcttttgct acgtgatgag gcagcagtat       300
     ggtggcaggg agtgaagact ggtgtgacgc agtgggaaga tttctgcact aagctccgcc       360
     acacatttgc cccgagaaaa ccgacattca tggtgtacta ccaaattaca catgaagtcc       420
     aggaggcgaa cgttacgaca gaagcgttta tcgcaagaaa gaggtccctg ttctcgttgg       480
     ctcctcctcc agcattcacc gagtcacagc agattgattt aatcttcccc ctcatccggc       540
     tggacataag gaaccgcatg cctcgagata cagtacccac tttttaccaa cttctggaga       600
     cggcacgagg tattgaggaa actctacatg agtacgcagc aagttcggag acaggcgaaa       660
     ctgggaacgc tccggggaag aaagtgaaaa ttaggtgcac cttctgcaaa aacctgggac       720
     acaccgcaga tgtctgtcgt aagaagaagc gggctgaagg cactctttct gctacagtga       780
     aggatgtctc agaaggtcaa acccaggcac catctccttc ccagccgaag ttctcctgct       840
     atgggtgtgg agcacccgga gtttacagga gtaattgttc cacatgtaag aaaagctcat       900
     ctccggtaaa aaaggaaaac gttgctttct gcgccgttga cgctcctgaa gaaacgcact       960
     cacgacctgt ggtgttcgtc gaggtggacg ggcaaaaggg aacggcattc atggacacat      1020
     gtgccaagat gagtgtcgca tcttatagcc tctaccagtc cctgctgaag agtggatgca      1080
     aattcattga gaagacagta gatctcacgt tagccgatgg cattaagaag gagcaggtgg      1140
     tgctggtgtg caaagccgtg gtgaacctga atggtcgcaa tatagccacc aggttcatcg      1200
     tgctgcagga agctcgggac aaccgcacac tgctaggcgt tgacttcttg caaaaagcgg      1260
     gtgtggtaat aaacatgcct cagtatacgt ggtccttcat cgacgaacct gacttgcatt      1320
     acgagctgta cccagaggag ttcaccatct ttgaatccac tatcatcaag gaaatgatga      1380
     ctttgccaag cccactcagc gcgatgacag tgacagacag tgaggatact gctagcgtgt      1440
     gcaacgctat gcctacgcct ccatcgaccc ctcctccagc gataatgacc gcgggtgaac      1500
     cagaaacccc tacagaggat caacaaggga tcacagacta caaactcgcg ctgattgacc      1560
     tcacttccac accaccaagc aagaaaaaac ctcgactgtt cgatgggtac tctccaagtt      1620
     tcacggactt catgatgcga gatgctcaga taaatgtcca tcgagaaaac gccgaactat      1680
     cgccacaaag taatagcctc tttgatgcga ataattggga cgttcgtata gactcgattg      1740
     acgtggtagc acatatcact ccggatcagg ataagctagt gaatcagctg ctggagaaga      1800
     acaacgatgt ttttaatacg aagcgagagc ccacgaaact gattgagcac acaatcaaga      1860
     cagtggatga caaaccaatc tcggtacccc cgtacagatt gtcaccacct cgaaaagaag      1920
     ctctgcagcg agagatcaag gctatgttag cagatggcgt catccaacca tctgcgtcac      1980
     catgggcggc ccctgtagtg ctagtaccca aggctaacgg gaccatacga gtctgtatag      2040
     actatcgccg actcaatgcg ataactgtac ccgacccata tcctattcca aggattgatg      2100
     atctcctgca cgaagcgaaa ccgacgcctt atatgtccct gctagacctg aaagctgggt      2160
     actggcagat tggcgttcgg gaagaagacc aggacaagac ggcattcatc accccttttg      2220
     gcatttacaa attcactcgc atgccgtttg gtttacggaa cgctccagcc acctttcagc      2280
     gactcattga ccgcatgcga gtaggaatgc cggacgtgaa gctgttggca tatttggatg      2340
     acctggctat attttcgcaa acgtttgaac accatttgga agacttgcaa aaggtattca      2400
     atcagctaaa agaatttggc cttactgcga atcgaggaaa atgccatttc tgttgttcca      2460
     ccatcaaata cttgggacac tatatcacgc cgaacggttt acaagtggac cctgagaaga      2520
     ctgcagctat cgcaaagcta cccacgccct ccaacctgaa acatctagtt gcatttctgc      2580
     agacatgctc atggtatagg agattcatag agaactttgc gaagattgcg gaacccctga      2640
     ctcgcttaac aaagaagaat gttagttggg aatggacaga ggaacagcaa aacgcctaca      2700
     atgagttgaa aaatcgtcta tcttctgctc caattttgag acaagccgat gaaaccgtgc      2760
     cgtacgtcat caaaagcgac gccagctctt atgcattagg agcagttttg gtccaggggg      2820
     agggtgaaga cgaacatcct gtagagttcg ctagtcgtct tctgacatcc gctgaacgga      2880
     actatacaac tactgagaga gaggcgcttg ctgtagtgtg ggcagtatca aaatttcgcg      2940
     gatatatcga agggctgcct gtcaccgtaa tcacggacca tcaagccctg aaatggctca      3000
     tgtccctaaa gactcctact ggcaggctgg cgagatgggc cctacagctg caggcgttcg      3060
     acattaccat taaatatgct cctgggaaaa cgaacgtcgt cgctgatttc ctctccagac      3120
     cgccgtgtaa taatgagaca gtgggatcct gtggcatctg tacagtgacc atagatatgc      3180
     ccatacgaag tcccgctgaa attagagacg aacagttaaa agatgaaaga ttacaacaga      3240
     tagtgaagga cctagaaagt ttgaacaatg acgaaaaagc ggtgtactgg agcaacaagg      3300
     gttacctgat gaataatggg ttactctacc gacacagtcc ccattcagat tccgaagagg      3360
     cacagttggc agtacccgaa catgagtggg ccaatatatt gtcaacatat cacgacaacc      3420
     ccttggccgg tcattacggt tcagataaaa cctaccgccg aatctcaaca aggtattact      3480
     ggactggcat gaggaaatac attgagagtt acacaaagaa ctgcctggag tgtcagcgtt      3540
     acaagtcatc gaatcaaaag cctgcgggat tgctccaaac tactgtaatg aatcaaagat      3600
     tcgaagtcat ttcctttgat ttgtttggtc cactaccaac ttcgctagat ggcaaaacct      3660
     ggattttcat cgtggaagat gtcgcaacgc gatgggtgga actcttcgcc ttacaccagg      3720
     ccactgcaga aaaatgcgcc atgactctga tcaacgaaat attccttcgc ttcggttttc      3780
     ctcgtcgtat gatcagtgat aatggacccc aattcgtcag tgccgtcatg caacaggttg      3840
     cttttacaat gaacatcaag catgccttca ctcctgtgta tcacccagag acgaacccag      3900
     tggagagaaa gaacagagat ttaaaacctc agttagcgat cctagtaaag gataagcata      3960
     gagaatggcc ggagcacctt ccaagtatta ggtttgcgat gaatactgca agcagcctat      4020
     caactggatt cacgccggca ttcttaactt tcggcaggga actgagaaca ccagatgaca      4080
     caacccatga ttttagaaag atcctgcaat ccgagaactt cgtcccaga                  4129
//
ID   Gypsy-19_SpEx-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-350
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4148-4148 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 350 BP; 79 A; 109 C; 76 G; 86 T; 0 other;
     tgtaacataa caaatcccaa caacgcccga gcgcacgacg cgtcatacca tcgatacgtc        60
     ataccgggcg tggcctcccc gcagcggctg cccccaccgt gcgccgcccc tgccggccgg       120
     cgactataaa acacggcccc cgccgtgtgc gcagccagtg ttcactgcgc tctcggaccg       180
     ctccaacctt tctggtgata gcaccgagaa ccagtcttac gctagcacac gcacggggat       240
     ccactctctg tactgttcta gtttatagta taattattgt tattgtttgc atataattaa       300
     taaactacgt tctgtcgaaa attgtgttgg ttcgtttaaa ccttgttaca                  350
//
ID   Gypsy-19_SpFr-I repbase;    DNA;    INV; 5382 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5382
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1855-1855 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           150..4919
FT                 /product="Gypsy-19_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKRSRHRRSQSRSRRRSNDSRNGSVSDESAHTPPKE
FT                 AHKPRRNPRRERSDSRDVSFYPHHNNRDRYRSRSKSSRLRLRDSPPRSRHP
FT                 SRDNGNALQSTLSDIMTKLSAIERANIFNNPLQNANQSSTTMNPVHEVTPR
FT                 LSSPTDLTAVPQQTRVDNSEDFSTTIRTPDPTVRGSDAPSAITMLADAIKS
FT                 LQPAKSRNYYVSNFDPSIHDIDVWCEEVDRAVSANGWSDYECLSRVASCLK
FT                 GDAKVWLNEWVTNDRTWSNFKLEFKPLCPRKLDYANILFDTMNMTSDKYPT
FT                 YAEYARRTLLRLRIVKGLTDELRTLIVIRGIDNPQVRAAAANANLTVEDLV
FT                 SFLSIYTKANRAKVDSRDSLSKKRILQNFPANDIKCYVCGKRGHSGRKCNK
FT                 KPRIEHPSDSSAKPETQTFTAKHATQTSNAKAGIQCSFCKKRGHAEETCFA
FT                 KDRSEYRNQRNVNLCTDQGSDKRDVVTAVVQGIPMDVLIDSGAQNVSLISS
FT                 DVLKYLSCDLKPTHCVLKGISEREIIATSFITVNIELSDISLEADLVVVPK
FT                 SCMNTSIIIGTDVLNRDGVVYIRSKDKQYITRTDTRTCANVTQVLDSTLVN
FT                 TPLKGTPRDFLMTVIQAFSEHFISGTATSTVTTGEMVIRLTSTTPIVYRPY
FT                 KLSFDEKLKVREIVKDLLEKRIIRESRSEYASPIILVKKKDGTDRMCVDYR
FT                 ALNRITEKERYPLPLIDDHIDRLGHYTYFSSLDMATGFHQIRISEDSVHVT
FT                 GFVTPEGHYEYLKMPYGLTNSPIVYQRIINQTLREFIEAGNVLVYIDDVLL
FT                 LSNSIEEGILLLRRVLETLTKAGFSINLKKCSFLTSEVEYLGRVISFGQVR
FT                 PSPRKIEALKNSPVPGNVRQVRQLLGLAGYFRKYIKGYATKTACIAHLTRK
FT                 GVEFRWGPEQERVRQDLIQCLTNEPVLAIFKPELPTEVHTDASSVGYGAVL
FT                 LQIHADGARHVVAYFSKVTQGAESKYHSYELETLAVVKALQHFRHYLIGLN
FT                 FKVVTDCNALKSTERKKDLLPRVARWWIYLQDFNFSIEYRKGVMLPHADYL
FT                 SRNPIVPVNQITRPRNWAQIAQAADNETRDLIQKVSEGQLDSSRYTVRGDL
FT                 LYYKYTPVGEESRLLCFIPKGHRLSLLRIFHDEHEHIDRDKTVDLILKHFW
FT                 FPGLRQFVSKYISHCLVCVSKKRVPRAPLQNISSWPKPDTPFSTVHVDALG
FT                 PLPESEGYKFVLVVVDAFTKFCLLYSIYRQDTSELKRVMTSAISLFGVPKM
FT                 LVTDRGRMFESVDFVQWITELGSELHYITPEMHGSNGQVERYIRTVLNMLR
FT                 IEVGHKNASWSSTLWKLQLVLNITKQKTTQASAIKLMIGTDATTPIIRSLV
FT                 RDLAVNTPETNREALREVSRNRASELLKKNQDQQDQTVNRSRRPPREYKVD
FT                 DLAFVVKYSQSTGKLDPGMRGPYRVTKVLPNGRYELKLLGGSCGKTTQAAS
FT                 QHMVPWKGEWCPETCASFFEGKSPRNLPLCSVLDTCVKLDSSRYRWRRRVI
FT                 QQWLVSHINGVCAAQQWRLSPNFNALVAHQWRLSPNFNALVAHQWRLSPNF
FT                 NALVAHQWRLSPNFNALVAHQWR"
XX
SQ   Sequence 5382 BP; 1481 A; 1314 C; 1235 G; 1352 T; 0 other;
     tcagaagtgg gataaagaac tacactgctc acgtttttgt tataaatcaa ggaacagaat        60
     aacggtcact tttaattact atttgtctat tattgacgtg tggttatttg ttctgtgttt       120
     tcattgtgtg cgttaagtga gtgctaacca tgcccaagcg gtctcgtcat cgtcgatcgc       180
     aaagtaggtc acgtagacgt tcgaacgatt cgcgaaacgg gtccgtgagt gatgaatctg       240
     cgcatacccc gcctaaggag gcccacaagc cgcgtcgtaa tccccgtcgc gaacgtagcg       300
     attcaaggga cgtttcattc tacccccatc ataataatcg cgaccgttac cgttcccgat       360
     ctaaatcgtc acgcctgcgt ttacgtgata gtcccccgcg ctctaggcat ccttcgcgtg       420
     acaatggtaa cgcattacaa agtaccctca gtgacatcat gacgaaactt agtgccatag       480
     aacgtgcaaa tattttcaat aacccgttgc aaaacgctaa tcaaagttca actaccatga       540
     accctgtgca tgaggtcact ccgcgtctta gtagtccgac agacttgacc gctgttccgc       600
     aacaaactcg cgtggacaac tccgaggatt tttcaacaac cattcgtact cccgatccaa       660
     ctgttcgcgg ttcagatgcc ccatcagcca taactatgct cgcggacgct ataaaatcgt       720
     tacaacccgc caagtcccga aactactacg tttctaactt tgacccaagc atacatgaca       780
     tcgacgtatg gtgtgaggaa gtggataggg cggtatcggc gaatggttgg agcgattacg       840
     aatgcctgtc gagagtagct tcttgtctca aaggtgatgc caaagtgtgg ctaaatgaat       900
     gggtcactaa tgaccgcact tggtcaaatt ttaaattaga gttcaaaccc ctttgccctc       960
     ggaagttgga ctacgctaac attctttttg atacgatgaa tatgacgtct gataagtacc      1020
     cgacgtatgc tgaatatgcc cggcgtacct tgttgcgttt gcgtatagtc aaaggcttaa      1080
     ccgatgaatt gcgcaccctt atagttatac gtggcataga caacccccaa gttagggcgg      1140
     cggcagcaaa tgctaatttg acggtggaag acttggtttc gtttctttcc atatacacaa      1200
     aagcaaaccg cgctaaagtt gactctcgcg atagcttgtc aaaaaaacgt atccttcaaa      1260
     atttccccgc taacgacata aagtgctacg tttgcggtaa acgtggtcac tcaggtcgta      1320
     aatgcaataa gaagcctcgc atagaacatc cttcggattc ttctgctaag cccgaaacac      1380
     agactttcac cgccaagcac gcaacgcaaa cttccaacgc taaggctggg attcaatgtt      1440
     cattttgtaa aaagaggggc cacgccgagg aaacttgctt tgcaaaggat cgttcagaat      1500
     acaggaatca acgaaacgtc aacttgtgta cagatcaggg tagtgacaaa agagatgtag      1560
     ttacggcggt agttcaaggt atccctatgg atgtacttat tgatagcggg gctcagaacg      1620
     tatcgttgat ttcctccgac gttttaaaat acctctcctg cgatctaaag cccactcact      1680
     gcgttctaaa gggcataagt gaacgagaaa ttatcgccac ctctttcata acagtaaaca      1740
     ttgaattaag tgatatttca ttagaagctg atttagtcgt agtccctaag tcatgcatga      1800
     acacctcgat tataatcggg actgatgtcc ttaaccgcga cggcgttgtg tacatacgct      1860
     caaaggacaa gcagtatata acacgtactg atactcgtac ttgcgccaat gtaacccaag      1920
     ttcttgactc aacactagtc aacactccgt taaaaggcac tccacgtgat tttctgatga      1980
     ccgttattca agccttttcg gaacatttta tttccggtac tgctacaagt acagtcacca      2040
     ctggcgagat ggttattaga ctcaccagta ctactccaat agtataccgc ccgtataaac      2100
     tttctttcga cgaaaaactt aaagtacgcg agatagtaaa ggatttgttg gaaaaacgaa      2160
     tcatcagaga atcacggtcg gaatatgcca gtcccataat cctagtaaaa aagaaagacg      2220
     ggaccgaccg aatgtgtgtt gactaccgag ccctcaaccg catcaccgaa aaagagaggt      2280
     acccccttcc cctgatagac gaccatattg ataggctagg acattacact tattttagta      2340
     gcctggatat ggcaaccggg ttccaccaaa tacgaattag tgaggactcg gtgcacgtga      2400
     cgggattcgt tacgccggag ggccactatg aatacctcaa aatgccatat ggtctaacga      2460
     attccccgat cgtgtaccag cgcatcataa accaaaccct tcgcgagttt attgaagcgg      2520
     ggaatgtact agtatacata gatgacgtgc tcctactcag taattcaatt gaagaaggca      2580
     ttctcttgct taggagagtg ttagagacac taacgaaagc gggtttctcg attaatttaa      2640
     aaaaatgctc gtttttgacg tccgaagtag aatatttagg tagggtgatc agctttggtc      2700
     aggtacggcc aagcccgcgt aaaattgagg ctctgaaaaa ctcacccgtg cccggtaatg      2760
     tcagacaggt cagacaacta ttaggcctag ccggatattt ccggaaatat attaaggggt      2820
     acgctaccaa gacagcgtgc atcgcccatc taaccaggaa aggggttgaa tttcgatggg      2880
     gtccggagca ggaacgggtc cgccaggacc tgatacaatg cctaacgaat gagcccgtcc      2940
     tcgcaatttt taaacccgaa ctccctaccg aggttcacac tgatgcaagc tctgtcggat      3000
     acggagcagt actcctgcaa attcacgctg atggtgcgag gcatgttgta gcatatttta      3060
     gtaaggtcac acagggcgct gagagtaaat accacagtta cgagttggag acattagcag      3120
     tcgtaaaggc cttgcaacac tttcgccact atttgatagg tctgaacttc aaggtcgtta      3180
     ctgactgcaa tgctctcaaa tcgaccgaac gtaagaagga tttgctccct cgcgttgccc      3240
     gttggtggat ctatttacag gattttaact tttccatcga atatagaaag ggtgtaatgc      3300
     tacctcatgc tgactacctc agtcgaaatc ctatcgtccc tgtcaaccaa attacgagac      3360
     cccgtaattg ggcccagata gcacaagccg cggataacga gacgagggac ttaattcaaa      3420
     aagtctcaga gggacaactt gactcttccc gatataccgt cagaggtgat ctcctgtact      3480
     ataagtacac tcctgttggt gaggaatcgc gattactttg ttttatacca aagggtcatc      3540
     gcttaagcct gctcaggata ttccacgacg aacacgagca catcgatcgc gataaaaccg      3600
     tggacctcat attaaaacac ttctggtttc ctgggctacg ccaatttgtt tccaaatata      3660
     tttctcactg tctagtgtgt gtctctaaaa agcgtgtccc tcgagccccg ttacagaaca      3720
     tatcgtcatg gcccaaacct gataccccat tcagcaccgt acatgttgac gccttgggac      3780
     cattacccga atcggaaggt tataaattcg tattagtagt agtggacgct tttacaaaat      3840
     tctgcctcct ttattcaatc tatcgccaag acaccagcga attaaaacgc gtaatgacct      3900
     ctgctatttc cttgtttggc gtccctaaga tgctagtcac tgatagaggt aggatgtttg      3960
     aatccgttga ttttgttcaa tggataactg aacttggctc cgaattacat tacatcacgc      4020
     ccgagatgca cggttcaaac ggtcaagtgg agcgctacat aagaacggta ctcaatatgc      4080
     tccgcatcga agtagggcac aaaaacgcat catggtccag cactctctgg aagctgcagt      4140
     tagtgctgaa catcactaag cagaaaacta ctcaggcttc agccattaag ctaatgatcg      4200
     gcaccgacgc tactacaccc atcatacgtt ccctggttcg agacctggcg gtgaacacgc      4260
     cggagaccaa cagagaagct ctgcgggagg ttagcaggaa ccgcgccagc gagcttctga      4320
     agaagaacca agatcagcag gatcaaaccg tcaataggtc cagacgtccg cctcgtgaat      4380
     ataaggtcga cgacctggcc tttgttgtaa aatactcgca gtcgacagga aaactggatc      4440
     cgggaatgcg agggccgtac agggtcacca aggttctgcc caatggccga tacgagctta      4500
     agttgcttgg cgggagctgc gggaagacta cgcaggcagc ctcccaacac atggtaccgt      4560
     ggaagggaga atggtgcccc gagacctgtg cttcgttctt cgagggtaag tcaccccgta      4620
     acctaccctt atgctctgtt ctagatacgt gcgtgaagct cgatagctcc aggtatcgct      4680
     ggcggaggcg agtcattcag caatggcttg tgtcgcacat caatggcgtt tgtgccgcac      4740
     agcaatggcg tttgtcgccc aactttaatg cgttagtcgc acatcaatgg cgtttgtcgc      4800
     ccaactttaa tgcgttagtc gcacatcaat ggcgtttgtc gcccaacttt aatgcgttag      4860
     tcgcacatca atggcgtttg tcgcccaact ttaatgcgtt agtcgcacat caatggcgtt      4920
     agtcgcccaa ctttaatgcg ttagtcgcac atcaatggcg ttagtcgccc aactttaatg      4980
     cgttagtcgc acatcaatgg cgttagtcgc ccaactttaa tgcgttagtc gcacaacagc      5040
     ggtatggttg aaatcaagct gtggttaagt atgcagcagg aatgtaggac tgtggggacg      5100
     cccattgtcc tatacttgtg cttttaatca tctagtttcg ttcaatttat tcacaatgtc      5160
     tcaacacgag attaataaca ttcgtaactt ttcagatgat gaaaccaatg actcagacga      5220
     taattcaggt cagcctggca gcagcaaccc ggttgggcta tccatgccgg agctggacga      5280
     ggtagcgcca gcggtgccac ctcaggacaa ccccatcgaa gacgagccct gaaccgatcg      5340
     agtcaagtgg agtcgagggc gactcggcgt caggagaggc cg                         5382
//
ID   Gypsy-19_SpFr-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-330
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1873-1873 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 330 BP; 96 A; 61 C; 53 G; 120 T; 0 other;
     tgttagggat taccagtacc ccaccataag cttactataa aagcgtgagc taacccgcgc        60
     tcaccccttt ttgtccaaca tcactcggag cggcaacatc gttcaagttc tgtgagacct       120
     atatttttca tgttatttaa ttaattgttg attgctactt ttacattttt gtgtgtgcta       180
     agtgatcgtt gttttgttcc tattagaatt aatactagta agtagataag tgttgattgt       240
     aatcataatt caattgagaa taaacgaaca ttagaggtaa ctacctccta atttgttttt       300
     tttaataaac accacttctg atcgctaaaa                                        330
//
ID   Gypsy-19_TrNi-I repbase;    DNA;    INV; 4348 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4348
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 222-222 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..1166
FT                 /product="Gypsy-19_TrNi-I_1p"
FT                 /translation="MEKLRFDFCVKTAADGKSNIICITSIGTPGGLTFGIP
FT                 DEYQPANLHQVITNTSYYAKIKKTLNKRHQKRKIWITLTNEISRVYLDEEQ
FT                 NMQFKDFYLEEIDENTNDPKPFIESSNKTLEKLLETLLDDKQKKNETRNLG
FT                 KIAKDFVLEKFTGKNSNAHQWIKEFNKECERFHIDEDQKKIEILKQFLEYP
FT                 SVNWYSCMLMKFTIESEWMKWEKNFCETFGNKGWSPIRYALGFKYQTGSLL
FT                 EYALKKEKLLLEVRKTIDTGTLIDLISVGLPNYLSDKIDRETLHQTEDLYN
FT                 EIGKLEHLVGRNKNEKKNHLYSDIKTKRNEEKKPCPICVNEKKGKRFHPEE
FT                 NCWFNAKNQKYAVKSVNNSELEVELNEENPKN"
FT   CDS           1151..4303
FT                 /product="Gypsy-19_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RESKKLEVSPLIKLKLLLNDTLKVTAIYDSGSNVSLI
FT                 NAKLLKIRKNEEDTINKQTANLKTINGDKKTKGMVTLKIKIYDIEKEMNIF
FT                 VIDNENFHYDFLIGLDCIKEFRLKQDEKLNIIQCHNSETEEKKQNEEDNRN
FT                 KYCENIMNVKIPDVLGDKNEQEINCLNECEINFNEHINLKEFEISVNNLDL
FT                 SKQTEIDKLIDKYKSVFAKDKYDVGTVRGYEAHIDLTVDQYCYKRPYRCTA
FT                 EDRKEIENQISKLLKKNLIEESYSPFAAPVTLAYKKEDGKRSRLCIDFREL
FT                 NKIVVPQSQPFPLIEDLIVKTVDCEYFSTFDINSAFWSIPLRIQDRYKTAF
FT                 VTQEGHFQWTCLPFGLKTAPAIFQRILRNIIRKYNLSDFAMNFIDDILVFS
FT                 KNFEEHIIHISKLLDAIISEGFRLKFSKCTFANNHAKYLGHIIRKNSVTPL
FT                 KDYLTAVRNFPIPETKKNIRQFLGKVNFYHKFIPHIAIILEPLHNLLRKDV
FT                 KFLWTKECQKSFDKIKDLLCSKPILKIFDPEQPIKIYTDASIQGVGAVLKQ
FT                 EDENGINKPVAYFSKKLTDTEKKKKAIYLECLAIKEALKYWQHWLMNKEFI
FT                 VYSDHKPLENLNIKSRTDEELGDLIYYLSQYNFKVKYNPGQSNQEADCLSR
FT                 NPVLEPNDNTEDFFKVVNLITMQDIKKDQDTNLNLQDEKSKFILENNIYYK
FT                 TNKRRKKIILSEAFSKTLIKNVHNMYCHIGRTQMINKITPFYTAKNIITNI
FT                 KKLCDECDICIKNKSRRNPKFGLMSHLGPATRPFEIVSIDTIGGFGGSRST
FT                 KKYLHLLVDHFTRYAFILTSKSQNSNDFIKLMEKVTQNYTVNMLLTDQYPG
FT                 INSKEFKDYLKKENIIIVFTAVDAPFSNGLNERLNQTLINRIRCKINEGDK
FT                 KIAWTTIAQKCVEKYNETEHTVTKFAPKYLLEGEKMDILPLELKKRCIVED
FT                 LKEDRELAFENTIKSHNYNKKKYDLKREEYTFKVGDRVYVENGNRLNRKKM
FT                 DELRIGPCKIIRKISNSIYEVDVGHKKAESNFYHITKLTPVRSSS"
XX
SQ   Sequence 4348 BP; 1826 A; 622 C; 732 G; 1168 T; 0 other;
     aaacaacatt ttcgcaatac aaatacttac aacaaataaa tatggagaaa ttaagatttg        60
     atttttgtgt gaaaacagca gccgatggaa aatctaacat catttgcatt acctcgatag       120
     gaacaccagg tggtctaact tttggtatac cggacgaata tcaacctgct aatttacacc       180
     aagtcataac aaatacatct tactatgcta agataaaaaa aaccttgaat aaaagacatc       240
     aaaaaaggaa aatttggata actttgacta atgaaatatc aagagtatat ttagacgagg       300
     aacaaaatat gcagtttaag gatttttacc tcgaagagat tgatgagaac acaaatgacc       360
     caaaaccatt cattgaaagc tcaaataaaa cactggaaaa acttttagaa acattactcg       420
     atgataagca aaaaaaaaac gaaactcgaa atttaggaaa aattgcaaaa gactttgtgc       480
     ttgaaaaatt taccggcaaa aactcaaatg ctcatcaatg gattaaggaa ttcaacaaag       540
     aatgtgagcg ttttcatatt gatgaagatc agaaaaaaat cgaaatttta aaacaatttt       600
     tagagtatcc aagtgtaaac tggtacagct gtatgttaat gaaatttaca atagaatcag       660
     agtggatgaa atgggaaaag aacttctgtg aaacattcgg aaacaaaggt tggtcgccga       720
     tcagatatgc tctgggattt aaatatcaaa caggctcatt gcttgagtat gcactaaaaa       780
     aagaaaaatt gttattagaa gttaggaaga cgattgatac aggtactctt atagacctca       840
     tatccgtagg cctgcctaat tatctgagtg acaaaattga cagagagaca ttgcatcaaa       900
     ctgaagatct ctacaatgag ataggcaaat tagaacatct ggttgggagg aacaaaaatg       960
     aaaaaaagaa ccacttgtac tctgacataa aaacaaaaag aaatgaagaa aaaaaaccgt      1020
     gcccaatttg tgtcaatgag aaaaaaggaa aacgatttca tcctgaggaa aactgctggt      1080
     ttaatgcgaa gaatcaaaaa tatgccgtga aaagtgtgaa taattctgaa ttagaagttg      1140
     aacttaatga agagaatcca aaaaactaga agtatcacca ttaataaaac taaagttatt      1200
     attaaatgac actttaaaag ttaccgcaat atatgactct ggttcaaatg tgtcgttaat      1260
     taatgcaaag ttattgaaaa tacggaaaaa cgaagaagat acaattaata aacaaacagc      1320
     aaacttaaaa actattaatg gtgataaaaa aacaaaaggt atggtaacat taaaaataaa      1380
     aatatatgat attgaaaaag aaatgaatat ttttgtgata gataatgaaa attttcacta      1440
     tgattttctc attggtttgg attgtatcaa agaatttaga ttaaaacaag atgaaaaatt      1500
     aaatatcata caatgtcata attcagagac agaagaaaaa aaacaaaatg aagaggataa      1560
     cagaaataaa tactgtgaaa atattatgaa tgtcaaaatt cccgatgtac tgggtgacaa      1620
     aaatgaacaa gaaattaact gtttaaatga atgtgaaata aacttcaatg aacatattaa      1680
     tttaaaagaa tttgaaattt cagtaaacaa cttagactta agtaaacaaa ctgaaattga      1740
     taaattaata gacaaataca aatcagtctt cgccaaagac aaatacgacg ttggtacagt      1800
     acgaggctat gaggctcaca tagacttgac agtagatcaa tactgctaca agcgcccata      1860
     cagatgcaca gctgaagata gaaaggaaat tgaaaatcaa atatcaaaac tattgaagaa      1920
     aaacttaatt gaagagtcat atagtccttt tgctgctccg gtcaccttag cgtacaagaa      1980
     agaagatggg aaaagatcaa gactatgtat tgatttccgg gaactaaata aaatagttgt      2040
     tccacagtca cagccgttcc cgttgattga agacttgatt gtaaagactg ttgactgtga      2100
     atatttttct acctttgata taaattcagc attttggtcc attccattga gaattcaaga      2160
     tagatataag acagctttcg tcacgcaaga aggtcatttt cagtggacat gcctcccatt      2220
     tggtttaaag acggctccag ctattttcca aagaatattg agaaatataa taagaaaata      2280
     taatctctca gattttgcaa tgaatttcat agatgatatc ttggtttttt ctaaaaattt      2340
     cgaggaacac ataatacata tatcaaaact acttgacgca ataatatcag aaggatttag      2400
     actaaaattt tcgaaatgca cttttgcaaa taatcatgca aagtatttgg gacatataat      2460
     aagaaagaat tcagttacac ctctcaagga ttatttaaca gctgtcagga actttcctat      2520
     tccagaaaca aagaaaaata tacgccagtt cctaggaaaa gtgaattttt atcataaatt      2580
     tataccacac attgcaatta tcttggaacc attacacaat ctgttacgga aagatgttaa      2640
     atttttatgg accaaagaat gccaaaaatc gtttgataaa ataaaagatt tactatgctc      2700
     gaaaccaatt ctaaaaatat ttgacccaga acaaccaata aaaatataca ctgatgctag      2760
     cattcaagga gtgggagctg tgttaaaaca ggaagatgaa aatggtataa ataaacctgt      2820
     agcttatttc tcaaagaaat tgaccgacac cgaaaagaaa aaaaaagcaa tatatttgga      2880
     atgcttggca attaaggaag ctttaaaata ttggcaacac tggctaatga ataaagaatt      2940
     tatcgtatat tcagatcata aaccactaga aaatcttaac attaagtcta gaactgatga      3000
     ggaactgggc gatttgatat attacctatc ccaatacaat tttaaggtaa aatataatcc      3060
     gggacaatcg aatcaagaag ctgattgttt aagtagaaat ccagtcttag aacctaatga      3120
     caatactgaa gattttttta aagttgtaaa cctaataacc atgcaagata taaaaaagga      3180
     ccaagacaca aatctaaatt tacaagacga aaaatcaaag tttatactgg aaaataacat      3240
     ttattacaaa acgaataaaa gaagaaagaa aataatacta tcagaagcat ttagcaaaac      3300
     tctaattaaa aatgtccata atatgtattg ccacattggt agaacccaaa tgataaataa      3360
     aataactcct ttctatacag caaagaatat catcacaaat attaagaaac tctgtgatga      3420
     atgtgatatt tgtattaaaa acaaatcaag aaggaatcca aaatttggtt tgatgtccca      3480
     tttgggtccc gcaacacgcc cttttgaaat tgtatccatt gacacaattg gaggttttgg      3540
     aggatcaagg tctacgaaaa aatatttaca tctcttggtt gatcatttta cacggtatgc      3600
     attcattttg acatcaaaaa gtcagaactc taatgatttt atcaagttga tggaaaaagt      3660
     gacacaaaac tatactgtaa atatgttatt aacagaccaa tatcctggaa taaattccaa      3720
     agaatttaaa gattacttga aaaaagaaaa cataataatt gtatttactg ctgtggacgc      3780
     gccattttca aatggtctta atgaaaggct gaaccaaact ttaatcaata gaataagatg      3840
     taaaataaat gaaggggaca agaaaatagc atggacaact attgcacaaa aatgtgtgga      3900
     aaaatataac gaaacagagc atacagttac taagtttgcc ccaaaatatc ttttagaagg      3960
     agagaaaatg gatattttgc cactggaatt aaaaaaaaga tgcatagtag aagatctcaa      4020
     ggaagacaga gaactagcat ttgaaaatac aataaagtct cacaactata ataaaaaaaa      4080
     atacgatcta aaaagagaag aatatacatt taaagtgggt gatagagtat atgtagaaaa      4140
     tgggaaccgg cttaatagga agaaaatgga tgagttaagg attggcccat gtaaaataat      4200
     aaggaagatt tcaaattcca tctatgaagt tgatgtcgga cataagaagg cggagtcgaa      4260
     cttctatcat ataacaaagt taacgccagt gaggagtagc tcttgaccga accatcatgg      4320
     taatgatgtt ctctccgagg gtgggaga                                         4348
//
ID   Gypsy-19_TrNi-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-331
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 176-176 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 331 BP; 109 A; 33 C; 42 G; 146 T; 1 other;
     tgtaaggaat atcactggcc acgacagtgt tattccacct cttttactta tttgtttttt        60
     tttgtcaatg wcatttttga attttaagaa gaagagtcag tttgtctttt tagtaaaata       120
     tttcttatat aatataaaga atatacatta taatataata ttatcatttc ttagaagtaa       180
     aggctataaa tgttgttttt tgttctttca ggtaagttat tctgtaataa atattgtatg       240
     tttttgtagt aacttttgta atgaaatatt aataaaattt tgttctttca gaaaacgcaa       300
     ttacgtcttt aattaagcat aaactattat a                                      331
//
ID   Gypsy-19_TrVa-I repbase;    DNA;    INV; 7523 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-7523
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 264-264 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..2340
FT                 /product="Gypsy-19_TrVa-I_1p"
FT                 /translation="MASTSKTAFQLEFGSHTIKINAELLLPFLKXEYPLVT
FT                 EIEKKTISEWRKLIKNADKRNILKFMEDNLGYSIPPDTIVTSVPEFTELLD
FT                 PNQTSLCIASTTASFTDRQMNIFPTGEFQENAESGAIPKMKDPTRMTVEEI
FT                 TEELYNNHNLDYNFATQKHAAKFLQKLRTGDVLPNKAAQNARLDSHVFVSS
FT                 INSPILTPPTITVPTQNVNGISAPVNYIQSFPAPSFTDSSIQKSNNKNPLQ
FT                 FQGINATNSRRLDAHDRDYISNNRNVTSTNIMQPNIPATRTNNWHSGPIAT
FT                 PSQQPGYSGHIPSNPMYNPYLQPNYIPLMVSPPKLQTPPFEKTNPMRWLQN
FT                 FEDIAKMGNWDSYSRIKYLLISLAIANENWHLNYGEELYNQSWEDVKRIFK
FT                 FQYGTEKSPAEILTEFVAIKQQSTETGLAYVERKLNLGKDVRTFLSEEVIV
FT                 KEIIKGLNPELLRLIINNIPTTYHELRIRVKEVQSQQALIAQATMTISQDQ
FT                 KENRSTQKVENPNEQVKLLLTAIEKLCVDKTTNKQVNIVDQENYGKHSSRR
FT                 DSTDRGRSRNRSIEGRNRDWSSSRKKGTTYKDRSLSRGRNYSRNRDYVEKG
FT                 TQHRNRQTENRSYSRDRRDRSYSRDRKDRNYSNHRNSRKENFRDGDRDRKY
FT                 GSRESSYTRNSTRSSSRDRYDSKSDSRHSRRRSQTPGPDRRNRSMTPDGKI
FT                 ICDYCKKKGHHESKCHKKAYDKQTQDSEN"
FT   CDS           2319..6758
FT                 /product="Gypsy-19_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TNAGFGKLKSARHKGQCRRAEIPQTHKEIKKRISVNW
FT                 SPITEYLTPTNEKPQTVRSTIPTDENGKQKFTAEAMTVGISSGLTIKVRKN
FT                 NKSFHALLDTGASITLMSDKLAEEIQPIGKCLDIVTASGEKLKIKGISTIK
FT                 IELNDYVTIPITGIVVEALNRELLLGNDFNIKFKANIDMQGQFLTINLDEM
FT                 NKFKMETYIGSATDIFWLNNTENDNITPLRIDAKLNGKTTKICIDTGACAT
FT                 IIGDAFVNPRDIRPTKTQVLKTANQNGIDIIGETNIELEIENHTFFSTALV
FT                 SKSLTNSLLAGNPFNIQHISVIDFAKNEVSFKTHDSRRLITTHATATESKI
FT                 EKHHSLGVSEILKENLTSSARTGIEEKKTINNNINSTFTDSHSRIEDTEKN
FT                 TSSAIRALPEPRHLTTIDTVHRSEFNDSANSKIMSDELNSDRESETLIKSL
FT                 QLKVLKDKIIPPHTETKIWCRVNGKRTQEFGLFQLSEGALTTKKLFSPEHV
FT                 IDIKQHIKIKIRNTSNRPVPLFKNYGIGTLDPIEIEYILEDENGNDLELDY
FT                 DKECINEIHQNSPDISESRLKELQINENLTSSQKRKIINLISSYQDIFAWS
FT                 DETFEGGKASYPPQKIELSDNTPVHRAPYRTGKKQREVIKEYIDKMLRANI
FT                 IKPSTSAYSSPLILVAKKEKGVYRPCVDFRKLNEKIKPESFPLVRVDSVIN
FT                 SLNNTAYYSSFDLESGYFQCKLDSDSSPITAFSTFDGHYEFNVLPQGLNIS
FT                 PLRFTQMVTTIFSSLLYHTLLVYMDDLLIFSKTFEEHIQKLEAFFQIVKKA
FT                 NLKLKPKKSQICVEEIKILGFIINAEGIRPDEEKTKAIKNLPTPKKPKDIR
FT                 SFLAMTGFYRNHIPNLAELSAPLIHLTKKNIKFFWDAECQRAYNNIKEKLI
FT                 TAPVLAHYDPDNASLELHSDASDIAISAVLNQRYENNDVRPLGYMSRVLSS
FT                 PEKTWSICERELLAITFGLDKFRPYLWNTQFKIFTDNQAITYINKMETPSM
FT                 RMTKLILKLSEFEYSIHHVSGKKNLIPDHLSRYPQEQPQINVISENDEQPE
FT                 ETEIDNLKVKTEQRKDPEILEIIETIRNPTAASTNQLKIAHKFYLENEILM
FT                 KKNQNLEKLVVVPKHLVKEVLHQLHNCSFAGGHLGIFKTLGKAKKRFYWKA
FT                 MEKDIRNFVTSCETCQFTKKLKSHEKYGIMASHKIPNTIFSKLSIDCAGPF
FT                 KIAQDAEGNKKRFVIGAVDYFTKFVYLKAVKNIQAPTVAAFLIELFSIFGT
FT                 ANEIVFDNGKNFKSNFIQTLLDQMGVKKTFTTAYSPKSNGQCERIWQTVGN
FT                 ILRSYTATNQNNWPEYIPTVMASYNSAVQKSTNYSPYFLMTGQEFRLPVDT
FT                 SLRPTCDDMSVALRMRNLDEARSQTIENIEKSQEVQRMEHNKFKKEPPFKV
FT                 GDYVLVHQPARTKELSEKLRIKYKGPFQIVEQLSPSLFKIRTNKRGKEKDE
FT                 VIQADRLKKYIDRLK"
XX
SQ   Sequence 7523 BP; 2846 A; 1462 C; 1316 G; 1898 T; 1 other;
     tggtgttagg tcgccgaact tttctcaggt agaaaaagtt ttaacgattt tacggtacca        60
     ttactgcccc ctaactcagt aatttacggt taaattcgtt attctattct aatttttatt       120
     aatttttttt catcgttttt tttggaaaaa attatggcta gtacttcgaa aactgcattc       180
     caattggaat ttggaagtca cacgataaag ataaatgcag aactgttatt accgttcttg       240
     aaamaggagt atccattagt tacagaaata gagaaaaaaa cgatttccga atggcgaaag       300
     ctaattaaaa atgcggataa acgaaatata ctcaaattca tggaagacaa tttgggttat       360
     tccattcctc cagatactat agtaacgtca gttccagagt tcacagaact tttggatcca       420
     aaccagacct cactgtgcat tgcatctaca acggcatcat ttaccgatcg gcaaatgaac       480
     atattcccaa ctggagaatt tcaagaaaac gcagaatctg gcgcgatccc aaagatgaaa       540
     gaccctactc ggatgacggt cgaagaaatt acagaagaat tgtacaataa tcataatctt       600
     gattataatt ttgcaactca aaaacatgct gctaaatttt tgcaaaaatt gcgaactgga       660
     gatgttctcc caaataaagc agctcagaat gcaagacttg atagccatgt ttttgtatct       720
     tctattaatt caccaatttt aaccccacct acaataactg tcccaactca aaatgtcaat       780
     ggaatatcgg cacctgtaaa ctatattcaa tcgtttccag cacctagttt cacagactca       840
     agtattcaaa agtccaacaa taaaaaccca ctacaattcc aggggattaa tgctactaat       900
     tctcgcagat tagatgccca cgatcgagat tatatttcaa acaacagaaa tgtcacttct       960
     acgaacataa tgcaaccaaa tatcccagct acacgcacca acaattggca ttctggtcca      1020
     attgccacgc cgtcccaaca gccagggtac agtggtcaca ttccatcaaa tccaatgtat      1080
     aacccttatc tccaaccgaa ctatattccc cttatggtta gtcctcctaa attgcagacg      1140
     cctcctttcg aaaaaaccaa tccgatgcgt tggctacaaa atttcgagga catcgcgaaa      1200
     atgggaaact gggattctta tagccgaata aagtatctac ttattagttt ggccattgca      1260
     aacgaaaact ggcatttaaa ttatggggaa gaactataca atcaatcttg ggaagatgta      1320
     aaaagaatat ttaaattcca atacggcaca gaaaaatcac ctgctgaaat tttaaccgag      1380
     tttgtggcga taaaacaaca atcaactgaa actggtctag cttatgtgga acgaaaattg      1440
     aatctgggaa aagacgttcg aacttttctc tcagaagaag tcatcgtaaa agaaattata      1500
     aaaggcttaa atcctgaact cttgcgacta atcataaata acatacctac gacttatcac      1560
     gagttacgaa tcagagtaaa agaggtgcaa tctcaacaag cactcatcgc acaagcaacg      1620
     atgaccattt cacaagatca aaaggaaaac cgttcaactc aaaaggtgga gaatccgaat      1680
     gagcaagtta aactgcttct aacggctatt gaaaagttat gtgtcgacaa aacaaccaat      1740
     aaacaagtca acatagttga tcaagaaaat tatggaaagc attcatcgcg cagagactca      1800
     acggatagag gacgaagtcg aaatcgatcg atcgaaggaa gaaataggga ttggtcctca      1860
     agcaggaaaa aaggaacgac ctacaaagac aggagcctca gcagaggaag aaattatagc      1920
     cggaataggg attacgtcga gaagggtact caacatagga acagacaaac agaaaatcga      1980
     agctacagca gggacagaag agataggagc tatagtagag acagaaaaga taggaactac      2040
     agtaatcata gaaactcgag gaaggagaat tttagagatg gtgacagaga taggaaatac      2100
     gggagtcgag aaagcagtta cactcgaaat tcgactagat catcgtcacg tgaccgatat      2160
     gactcaaaaa gtgactccag acactctaga cgcagatctc aaacaccagg tccagaccga      2220
     aggaatagaa gcatgacacc ggatggaaaa attatttgtg attattgtaa gaaaaaagga      2280
     catcatgaat caaaatgtca taaaaaagcc tatgataaac aaacgcagga ttcggaaaac      2340
     taaaatcagc tcgacataag ggtcaatgta gacgagctga aataccacag acccacaaag      2400
     agattaaaaa acgaatttcg gtaaattgga gtcccatcac tgaatatcta accccaacga      2460
     atgagaaacc acaaactgtg cgatcaacta tcccaactga tgaaaatggg aaacaaaagt      2520
     ttacagctga agccatgacc gtaggaatca gttcaggact caccataaaa gttcgtaaaa      2580
     ataacaaaag tttccatgca ttattagata caggtgccag catcactctc atgagtgata      2640
     aactggccga ggagattcaa cctatcggaa aatgtttaga catagtcact gcaagtggag      2700
     aaaaactcaa gataaaaggc atatccacta taaaaattga attgaacgat tacgtcacga      2760
     tacctataac aggtattgta gtcgaagcgc taaaccgaga actcctacta ggaaatgact      2820
     ttaacatcaa atttaaagcg aacattgata tgcagggaca attcttaacc atcaatttag      2880
     acgaaatgaa caagtttaaa atggaaacgt atattggcag tgctactgac atattttggt      2940
     taaataatac tgaaaatgac aacatcactc cactcagaat agacgctaag ttaaatggaa      3000
     aaacaacgaa aatatgcata gacaccggag catgtgcaac aataataggc gacgcctttg      3060
     tgaacccaag ggatatacgg ccaacaaaga cacaggtttt gaaaacagca aatcaaaacg      3120
     gcatcgacat aataggtgag acaaatatcg aattagaaat agagaatcat acatttttta      3180
     gcaccgcatt agtctcaaaa tcattgacga actcattgct cgctggaaac ccattcaaca      3240
     ttcagcatat ttcggtcatt gactttgcga aaaatgaggt cagttttaaa actcacgact      3300
     cgaggagatt aattaccaca catgcaaccg ctacagaaag caaaattgaa aaacaccaca      3360
     gtttgggtgt cagcgaaata ttgaaggaaa atctgacatc atcggcgaga acaggcatcg      3420
     aggagaagaa gacaattaat aacaatataa attccacgtt cacggactct cactcacgta      3480
     ttgaagacac ggaaaaaaat acaagctcag caatacgggc gcttccagaa ccgagacatt      3540
     taacaaccat cgatactgta cacagatccg aattcaatga ttcagcaaac agcaaaatta      3600
     tgagcgatga acttaatagc gaccgcgaat ccgaaacact cataaaatca ttacaattaa      3660
     aagttctcaa agataaaatt ataccaccac acacagaaac gaagatatgg tgcagagtga      3720
     atgggaaaag aacccaagaa tttggattat ttcaactctc cgaaggagca ttaacaacga      3780
     aaaagctctt cagtccagag catgtcattg acatcaaaca acatataaaa attaagatta      3840
     ggaataccag taataggcca gtaccattgt ttaaaaacta tggcattggt acactcgatc      3900
     ctattgaaat cgagtacata ctggaggatg aaaatggtaa tgaccttgaa ttggactacg      3960
     ataaagaatg cataaatgaa atacatcaaa attcacccga tatttcagaa tccagattga      4020
     aagagcttca aataaacgaa aacttaactt caagccaaaa gagaaagata atcaatttaa      4080
     ttagtagtta tcaagatatt ttcgcctggt ctgacgaaac ttttgaaggc ggtaaggcaa      4140
     gctaccctcc tcaaaagatt gaactgtcag ataatacgcc agtacacaga gctccttata      4200
     gaacgggaaa aaagcaaaga gaagtgataa aagagtacat tgataaaatg ttgagagcaa      4260
     atatcataaa accatcaact tccgcttaca gtagtccttt aattttagtc gcgaaaaaag      4320
     aaaaaggggt gtatcgacca tgcgttgatt tcagaaaatt aaacgaaaaa ataaaacccg      4380
     aatcattccc attagttcga gtggactcgg ttataaacag tctaaataac acagcctatt      4440
     acagtagttt cgatcttgaa agtggatatt tccagtgcaa acttgattca gacagctctc      4500
     ctataacagc tttcagcaca tttgatggac actacgaatt caatgtatta cctcaaggcc      4560
     taaatatatc accactaaga ttcacacaaa tggtgacaac aatattcagc tctttacttt      4620
     atcacactct cctagtttac atggatgatt tattaatatt ttcaaagaca ttcgaagaac      4680
     acattcagaa attagaagct tttttccaaa tagttaaaaa agcaaattta aaattgaaac      4740
     cgaaaaaatc ccaaatttgt gtagaggaaa taaaaatttt aggatttatt ataaatgctg      4800
     aaggtattcg accggacgaa gaaaagacaa aagccattaa aaaccttccg actcctaaga      4860
     aacccaagga tattcgatcg tttttagcaa tgacgggatt ttatcgaaat catattccga      4920
     acttggcgga attaagcgca cccctaattc atctaaccaa gaaaaacatt aaattctttt      4980
     gggacgccga gtgccaacgt gcttataaca acatcaaaga aaaattaata actgctccag      5040
     tacttgctca ttacgacccc gataatgcat cactggaatt acacagcgat gcatctgata      5100
     ttgctatttc tgcagtgtta aatcaacgtt acgaaaataa tgatgtgaga ccactaggat      5160
     acatgtccag agttttaagc tcaccagaaa agacttggag catttgtgaa agggaactac      5220
     tcgcaataac tttcggccta gacaaattcc gaccgtatct gtggaataca cagtttaaaa      5280
     tattcaccga taatcaagcg attacataca taaacaaaat ggaaacacca tcaatgcgta      5340
     tgacaaaact cattctaaaa ctctcagaat tcgaatattc cattcaccac gtttctggta      5400
     agaaaaatct aatcccagac caccttagtc ggtatcctca agaacaacca cagataaatg      5460
     taatttccga aaatgatgaa caacctgaag agactgaaat tgacaattta aaagtgaaaa      5520
     cggaacaacg taaggaccct gaaatattgg aaattattga aaccatcaga aacccaacag      5580
     cagcatccac aaatcagtta aaaatagctc ataaatttta cctagaaaat gaaattctaa      5640
     tgaaaaaaaa tcaaaatctg gaaaaacttg tggttgtacc gaaacattta gtaaaagaag      5700
     tgcttcatca gctacacaat tgcagtttcg cgggtggaca tctaggtatc ttcaaaacat      5760
     taggaaaagc aaaaaagaga ttttattgga aagcaatgga aaaagacatt cgaaactttg      5820
     ttacgtcatg cgaaacatgc caattcacaa aaaagttaaa atctcatgag aaatatggca      5880
     tcatggcttc tcataaaatt ccgaacacca tcttctcaaa attatcaata gattgcgcag      5940
     gtcccttcaa aatagcccaa gacgctgaag gaaataaaaa gagattcgtc attggagcag      6000
     tggattattt caccaaattt gtatacctaa aagccgtaaa gaacatacag gcaccaactg      6060
     tggcggcatt tttgattgag ctattcagca tttttggaac agcaaatgaa atagtgtttg      6120
     acaacggaaa aaacttcaaa tcaaatttca ttcaaacctt actagatcaa atgggagtta      6180
     aaaagacatt tactacagcc tattcaccga aatcaaacgg tcaatgtgaa cgcatatggc      6240
     agacagtagg aaatatactc agatcttaca cggctaccaa tcaaaacaac tggccagaat      6300
     acatacctac tgttatggca tcgtataatt cagccgtgca gaaaagtacg aactacagtc      6360
     cttacttttt gatgacggga caggaattcc gcctacccgt ggacactagc ctccgaccaa      6420
     catgtgatga catgtcggta gccctccgaa tgcgaaattt agacgaagca agatcacaaa      6480
     caattgaaaa tattgaaaaa tcgcaagaag tacaaaggat ggaacacaat aaattcaaga      6540
     aagagccacc cttcaaggtt ggtgattatg ttttagtcca tcagccagcc agaacaaaag      6600
     aactctccga gaaactacgc ataaagtaca aaggcccttt ccaaatagta gagcaacttt      6660
     cgcctagttt attcaaaatt cgcacaaata aaagggggaa agaaaaagat gaagtcatac      6720
     aagccgatcg attaaagaaa tacatagatc ggctgaaatg agaaaaaaaa atgtaaacaa      6780
     acaaaatgtt acataaaatc aacgcagaaa cgagataccc cctcccatcc ttccccatca      6840
     tgacggacaa gaggaaggaa gaaatgaata aacctcacga caataacact acgacgatcg      6900
     agaacgctaa ctcatcataa ctttcataca aacgggcgga tcaatttaca gccaagacag      6960
     ataaccaagt tcaacgggga gtccctctac aagtattcac tacagtgtta aatgctaaga      7020
     tacataattt tatacatttt ttttttggtt ctctaccgaa tttttgagtt acagtgacaa      7080
     cattaattta ttgagaaaaa aaaatgcgtt cattccatta atcttttaaa attgctttca      7140
     tttttttaca ctacggtgta tataattttg ttttgttttt atcattgaat tgatgaatta      7200
     gtggtagtta tgtcgagttg tgtgacgttg tattgtattg tgttatattg tgttacttat      7260
     ttattttatt gtgttgttaa ttattattct tcatcgaaat tatttttgta ttttaaccgc      7320
     aaggttcatc tttatcttat cttaataatg ttaatttgtt ttacttagta attagttatt      7380
     gattataatt gtaccacgga atgacccctc ccccgcattg caaaatattg catcattaaa      7440
     tcaattgcca ttccgtaccg caaacccccc ttctcttacg aacatattct tattcaagaa      7500
     tatgtttgcc tgagtgggag gta                                              7523
//
ID   Gypsy-19_TrVa-LTR repbase;    DNA;    INV; 597 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-19_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-597
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 323-323 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 597 BP; 183 A; 125 C; 152 G; 135 T; 2 other;
     tgtgacagag actcaaacag acgcgtcgac aacacatgtc gcgagtgaga gaagagagag        60
     agagcaaaga gaaaaagggg agagcgaaga gaaagagaat gtgttgtcgg tgcgcatgcg       120
     cgagtctcgc ggaaattcat gagcaggtct gccggccgat ggaaagagaa gagatattca       180
     ttccggattt cgacccgatc aacgcggcag cgtatcgggt tcggacacag ccgtgattaa       240
     ttcgtttgtc atttataatt attcgatcaa aataaatatt taawgttgtt caaattgaga       300
     ttgktttgat ctcttcaatc gtcatctgtt aggcatccga tcaacaaagg aacccgtagg       360
     tcgtccatac taattcatag gtgaagctcc acgaaagatc ccacacggga acccgctggc       420
     ctttcacctg tgaatttagt acgtcaaaat atcttggcac aagcaccacc acaataagat       480
     ctcttttatc agagaacctg gggtgtgctc cgtggcaaga tattttgcgg gcgacaaacg       540
     ccagatcctg agttgatcga agggtgtagg taaaaaggga aaagtcacct caccaca          597
//
ID   Gypsy-1A_DPer-LTR repbase;    DNA;    INV; 826 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1A_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-826
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1493-1493 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. ~85% identical to Gypsy-1_DPer.
XX
SQ   Sequence 826 BP; 213 A; 183 C; 153 G; 277 T; 0 other;
     tggctcacca tggcggtacg ctggtgtgac cccctcggct ttttataatt ttttaatttt        60
     tcgttttttc tttatacata tttaatttcc ttacttctaa tatcatatat tatattcaca       120
     tacgctctcg tttatatata catacctcta taaatatcta aaacgtttct ctttctcctt       180
     tagagattaa gcctcatatt tttccatttc cattaatttc tttcccttga tttgcctact       240
     ggttaattaa agacttgtgt tctttccggt agtgaaacac ttgttcgctc ggttttgatg       300
     atgtagccac atgtctagta ttaagtccaa agaaatatat tgaattttgt cagccatgaa       360
     tatggagtag acttctaatt tcctggtgac atggtgacgt aagggggtag ggtgagaata       420
     ttagggattt ccagaacatt tcgcaccact ggaaatcatg gaagggtggg tacaaaattg       480
     tgtgtgtcga cttccatctc aagacctcac gcccgcgata tttttggaac accccgacga       540
     aagcccctag tactttcgag tacgccctat gtatgattgt gccatttcat ttcggctatg       600
     atcggaatat gcaaattgtt gttttcggag ttagctccct gtagagtcac gggattctaa       660
     aattttaaag tttatgtagt atgagtcgag acgcggtcaa acgacccccc cccccacaag       720
     ttaccgaatg agcacggaac cagagaatcc ccaccggcag tgacctcgac atcccctcca       780
     atccatcccc tactgacgta tagaaatata tcgttgactt gttaca                      826
//
ID   Gypsy-1B_DHyd-I repbase;    DNA;    INV; 6671 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1B_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6671
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2395-2395 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites. The consensus is ~90% identical to that of
CC   Gypsy-1_DHyd-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..1773
FT                 /product="Gypsy-1B_DHyd-I_1p"
FT                 /translation="MSRFNQYRNPRRQSSDSDSDCVVPPPSGRMDADQLTE
FT                 IIRTATSKALAEQAAVNQQREHVLTQRINELAEQIAVANVAAPQVVAYAAI
FT                 GIRNDIHCDEPLDAVKCLPEFAGVQESYVSWRQAALATYEIFRPYNGSSRH
FT                 YQAVIIIRSKIRGPADAVLASFGTVLNFDAIINRLDFTYSDKRPIHVIEQE
FT                 LSTLRQGGLSLLQYYDEVEKKLALLTNKVNMSYEPALAKGLCEKFRDDALR
FT                 VFISGLKRSLTDVLFAAKPRDLPSALALAQEVESNHERYSFAANFAKSLED
FT                 KERKPHAKAQGHQYERYSHQAERQASGTKNPHFSKQNRAPFRTDPRSTRQH
FT                 NNNGAPVPMEVDPSFSRVMQPTQALAYANKKHPASDRTGGLRKQQRLNHVT
FT                 QGAGQGAEVCADAASSAAAQINDVTSYNSDALNFLGVNPFYPSSDEE"
FT   CDS           1788..4826
FT                 /product="Gypsy-1B_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MQFLIDTGAAKNFIRPHKGLKGVRSVESPFKIHSIHG
FT                 ETQITHKCFVSMFGLKATFFILPDLSTFDGIIGLDLLKQASASLCLASGQL
FT                 KWGTEVEPITFHKCKNVNFTNVDCADASPLVRSSFLKMLKTRQKAFADPDE
FT                 ALPYNTSVVATIRTTDEQPIYAKLYPYPMGAADFVNKEIKDLLKNDIIQKS
FT                 VSPYNNPIWVVDKKGTDEAGNRKMRLVMDFRKLNEKTVPDKYPMPNISMIL
FT                 GNLGRAKFFSTLDLKSGYHQIILAERDREKTSFSVNGGKYEFKRLPFGLKN
FT                 AASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDEESHIKHVDWVLKSLHE
FT                 ANMRVSVEKSRFFKKSVNFLGFVVTSTGTTTDPEKVRAIQEYPEPKTLFEV
FT                 RSFLGLASYYRCFIRDFAAIARPISNILKGENGTVSKHRSRNIKVQFSEVQ
FT                 QRAFQKLRDILSSENVMLRYPDFKKPFDLTTDASAHGIGAVLSQEGRPITM
FT                 ISRTLKDSEVNYATNERELLAIVWSLAKLRHYLYGVKDINIFTDHQPLTFA
FT                 VSESNPNAKIKRWKARIDESNARIFYKPGKDNLVADALSRQQLNAINEQEI
FT                 ESCAATIHSEVSLTNTIETTDKPLNCFQNQIVLEEARFPLKRSFILFGNKK
FT                 RYLISYTCVESLLDELEDVVSPKCVNALHCNLHTLAMIQDALVRRYPATKF
FT                 WHCKNRVVDIFAVGEGREILTVEHNRAHRSAQENVKQVLSEYYFPRMAKIA
FT                 KEIVQNCKTCARAKYDRHPKKQELGETPIPSHVGEMLHIDIFSTDKKYFLT
FT                 CIDKFSKFAIVQPVASRTIVDLKPAVMQLMNFFPKARSIYCDNEPSLNSET
FT                 IMTMLTNNYGVSISNAPPLHSISNGQVERFHSTLLELARCLKIDKGINDTV
FT                 EVILLATTEYNKSIHSVIDQRPVDVVQAHSDEPQEKIEEKIRNAQTTLRAR
FT                 ENAKRQNRVFDVGDKVLVKSNRRLGNKLTPLCVEKAVEADLGTEVLIKGRV
FT                 VHKDNLR"
XX
SQ   Sequence 6671 BP; 2018 A; 1568 C; 1513 G; 1572 T; 0 other;
     ggcgcccaac tagtggtcgg actccacaac caacaacaat taagacagca gcgcgggagc        60
     tgcaattgac agatcttata aagggatttt ttttttttgt tttgtgttag ttgaatcttg       120
     taagtggata ctctagccaa aatttttctt caaacacaaa aagtgttaaa atttatttta       180
     taaaaaaata cctaggacta gcgagtattt tatattgcaa ttgcatgtaa aaaaaaaaaa       240
     aaaaaaaatt aatgatcaga accaagtgag agtgactact ttgggaattt tagtggcagc       300
     aattgatcat tcagatcgtc aataaaatta cattgtgtta ctttctgtgt gtctgaagtt       360
     gtgcatgcag ttctcgtagt tcagagctgt gacgtaattc gacccatctt ctgacggccc       420
     gttttatttt tcgcgaccac tgacctgcgc atgtctcggt tcaaccaata tagaaaccct       480
     cgcaggcagt ctagcgactc agattccgac tgtgtagttc ccccaccatc aggtagaatg       540
     gatgcagatc agcttacgga aataataagg acggctacta gcaaagcttt agccgaacag       600
     gccgctgtaa accagcagag ggaacatgta ttaactcaac gaattaatga gttagctgaa       660
     caaatagcgg tagcaaacgt tgccgcccca caagtagtag cgtatgctgc tataggaatt       720
     aggaacgata ttcactgtga cgagccacta gatgccgtca aatgcttacc tgagtttgca       780
     ggggtacagg aatcgtatgt atcttggagg caggcagcat tagccactta cgagatcttc       840
     agaccgtata atggcagttc tcgtcattat caggccgtca tcatcataag aagcaagatt       900
     aggggccccg cagacgcggt gctagcctca tttggtactg tgctgaattt tgatgcgata       960
     ataaatcgcc tagatttcac atacagtgat aagagaccaa ttcatgtcat tgaacaagaa      1020
     ttaagtacct tgaggcaagg tggcctgtcc ctgcttcaat attatgatga agtagagaag      1080
     aaactcgctc ttctcacaaa caaagttaat atgtcatatg agccggcttt agcaaagggc      1140
     ctatgtgaaa aattccgcga cgatgcgttg cgtgtgttca tatcgggtct caagcgcagt      1200
     ctaacagatg tgctctttgc agcaaagccc agagatctgc cttcagcgct agctctcgcg      1260
     caagaggtcg agtcgaatca cgaaaggtac tcattcgcgg ctaattttgc aaaaagtctt      1320
     gaagacaaag agcgcaagcc gcatgcaaaa gcgcagggtc accaatatga gaggtattcg      1380
     catcaagccg aaagacaagc tagcggtaca aagaatccgc actttagcaa gcaaaacagg      1440
     gccccatttc ggactgaccc acgaagcacc aggcagcaca acaataatgg cgcaccagtg      1500
     cccatggagg tcgatccttc cttttcaagg gtaatgcagc ccactcaggc ccttgcttac      1560
     gcgaacaaga agcaccccgc atctgaccgc acaggcggtc tgagaaagca gcaaaggttg      1620
     aatcacgtca cgcaaggcgc gggacagggg gcagaggtgt gtgctgatgc tgcctccagc      1680
     gcagcggcac aaatcaatga cgttactagt tataactctg atgcccttaa ttttttagga      1740
     gtaaatccct tctacccgtc atcagacgaa gagtaggagg gactcacatg caattcctca      1800
     tagacacggg cgcggccaag aatttcattc ggccacataa agggttgaaa ggcgtccgct      1860
     cggtagagtc ccccttcaaa attcactcca ttcacggcga gacacaaatt acacacaaat      1920
     gctttgtttc aatgtttggg ttaaaagcaa ctttttttat tctgccggac ttatcaacct      1980
     ttgatgggat tataggcctt gacctgctaa agcaggcatc tgcttcgctt tgtttagctt      2040
     caggacaact taagtggggc acggaggtcg aaccaatcac cttccacaaa tgcaaaaatg      2100
     taaatttcac aaatgtagac tgtgcagacg catccccatt agttagaagt tcttttttga      2160
     aaatgctgaa gaccagacaa aaggcctttg cagacccaga cgaggcgttg ccgtataaca      2220
     catcagtcgt ggctaccatt aggactacag acgagcaacc gatctatgcc aagctttacc      2280
     catatccaat gggagcggct gatttcgtta ataaagaaat caaagatcta ctaaagaatg      2340
     atataattca aaagtccgtc tctccctaca ataacccaat atgggtagta gacaagaagg      2400
     gcactgatga agcgggcaat aggaaaatga ggttggtaat ggactttcgt aaacttaacg      2460
     aaaaaaccgt gccggacaaa taccctatgc caaatatatc aatgatattg gggaatttgg      2520
     ggagagccaa attcttttca acattagacc tcaagtctgg ttatcaccag atcatactcg      2580
     ctgaacgcga ccgtgaaaaa acctctttct ctgtgaacgg ggggaaatac gagttcaaaa      2640
     gactcccctt tggattaaag aatgcagcaa gcatctttca aagaaccatc gacgacatac      2700
     tgcgagagca gattggcaaa ttttgctatg tttatgtcga tgacgtaatc atcttttcag      2760
     aagatgagga atcccacatt aaacacgtgg attgggtcct aaaaagctta cacgaagcaa      2820
     acatgagggt ctccgtcgaa aagtcacgtt tttttaagaa aagcgtgaac tttcttggtt      2880
     tcgtagtcac cagcactggc accacgacgg atcctgaaaa ggttagggca atacaggagt      2940
     atccagaacc aaaaacgctg ttcgaggtta gatcatttct aggcctcgca agttattaca      3000
     gatgtttcat tagggacttc gccgcaatag caagacccat ctcgaatatc ctgaagggtg      3060
     aaaatggaac agtcagtaag cataggtcca gaaatataaa ggttcaattc tctgaagtgc      3120
     agcagagggc atttcagaag ttgcgcgata ttttgtcatc cgagaatgta atgctcaggt      3180
     accccgattt taagaagcca ttcgatctaa cgaccgatgc ttcggctcac ggcataggtg      3240
     cagttttgtc tcaagagggt cgtcctataa caatgatttc aagaacattg aaggacagtg      3300
     aggttaacta tgcaaccaat gagagagagt tattggccat tgtatggtca cttgccaaat      3360
     taaggcacta tttgtatggg gtgaaagaca ttaatatctt cactgaccat caacccttga      3420
     ccttcgcagt ttcggaatct aatccaaatg cgaaaatcaa aaggtggaaa gcgcgcattg      3480
     acgagtctaa tgcacgtatc ttctataaac ctggcaagga caatctggtt gcggatgcct      3540
     tgtcaagaca gcagctcaac gctataaatg agcaagaaat tgagtcctgc gctgcaacga      3600
     tccacagtga ggtatctctc accaacacca ttgagacgac agacaaaccc ttgaactgtt      3660
     ttcaaaacca gatagtgcta gaagaggcgc gtttcccctt aaaacgaagt tttattcttt      3720
     ttggaaataa gaaacgctac ttgatcagct atacatgcgt cgaatcgctg ctagacgagc      3780
     tcgaagatgt agtctcaccc aaatgcgtaa atgctctcca ctgtaattta cacacgcttg      3840
     caatgataca agatgcattg gtgcgaagat acccagccac aaagttctgg cattgcaaaa      3900
     atcgcgtagt ggacatattt gcggttggag aaggaaggga aatcctcaca gtcgagcata      3960
     atagggccca taggtctgca caggaaaatg ttaagcaggt actctcggag tactactttc      4020
     cacggatggc aaaaattgcc aaggaaatag tacaaaactg caaaacatgt gctagggcta      4080
     agtatgatag acaccccaaa aaacaagagc ttggagagac accgatcccc tcacatgtag      4140
     gagagatgtt acacatagac attttctcca ctgacaagaa atactttctc acttgcatcg      4200
     acaagttctc taagtttgct atcgtccaac cggtcgcttc aagaaccatt gtggatctga      4260
     agccagccgt aatgcaactt atgaattttt ttccaaaagc cagatccatt tactgtgaca      4320
     atgaaccgtc attgaattca gagaccatca tgactatgct cacaaacaac tatggggtca      4380
     gcatttcaaa tgcaccacca ttgcatagca tatcgaatgg acaggttgag cgctttcaca      4440
     gcactctgtt agagctagcc agatgcctaa agatcgacaa aggcataaat gacaccgtag      4500
     aagtcatttt actggccaca accgaataca ataagtcgat ccattcggtc atcgaccaga      4560
     gaccagttga tgtggttcag gcgcactctg atgagccaca agagaagata gaagaaaaga      4620
     tcagaaacgc tcagacgacg ctcagagcta gggagaacgc aaagcggcag aatagagtct      4680
     tcgatgttgg tgacaaggtt ttggtcaagt ccaaccgacg gctcggaaac aaactcacac      4740
     ctttatgtgt cgagaaggcc gtggaagcag acctggggac cgaggtcctc attaaaggaa      4800
     gggtggtcca caaggacaac ctaagatgac tcccttgttt ttttttatta cacctttttt      4860
     ttaagccgct aggcaatttc gaataagtta gatatagttt tctatttacc tttagccact      4920
     tggcatagtt tttataaaac attttggtgg cgggtacacc cgatgctggt gatttagagc      4980
     agactaggtc cactgaaatg cgactaatga atgccaacag tagacggata gaagtaaaca      5040
     ctgaggttca agaccaactt aaccagttaa catttgctgt cagtggagtt ctcgggatag      5100
     ccaaaactca caaattgatt ttattgattt atttatttga aacactgaaa cactgtccag      5160
     aaacagaatg cggacgatgg agttgcaaag tttaatgctt gctattactc tcgcgaaggc      5220
     tcattgttag cccaaacatt ttggactcct cagatttaaa atcaatttgg ctagaggaat      5280
     ccatcaacac tatacatttt ataaccaaat tcccaaaaat taaaaaagcc tgcagaaaaa      5340
     ttacgattta tcctgtcgtc cacaagaacc agcaacagct ctattcgccc catagttgga      5400
     tgctaagcca gaaccacagc atgcaaatct acaagcggaa tcgttgagga aacccccttg      5460
     ttcacggcac caccaccaac agtagaagct catcagccag caacaactaa cgaactcttc      5520
     gcggcggcag agccaagcga ctcttcatcc atactagaac caagtcaaga aatccccaaa      5580
     acaccgccaa ctgcattaat tcaagaagtt tcacagccac aggttgctcc aaccgctgcc      5640
     catctctgtc gacacctgcc acggctgccg gctcatcctc atcctcatcg gcagcggcgt      5700
     cacgtcaact gcagctgccg gcattgtcgg cagttgccgc acggcaacag cagctactgc      5760
     tgaacggctc tctgaagagc aagacgaaga catttcctgc gtatcgagca tcggtgcgca      5820
     gcgagagcga cgacaaggag tacagggcgg ctagcagcag cagcaacacg ataccgacga      5880
     cgggcaaaag tcggccaaga tcagcggcaa gaactgtaac aatctgctgc acaacgccgg      5940
     caataagcta agcgtgagca gcaactcctt cggcctatac gcagcatctg gcatcatcgc      6000
     ccaagagccc tgtctccagc aacggccatc tgaacaaata ctgcctgacg gacttgacgc      6060
     gccgcaaggc cgaattcaat cgccagctga gcgcgccgac agactacaca catcactcgt      6120
     ccagtaacgg ctcatagcat cgctggagtg gtgggacaca gtcatcacgg ccatcacggg      6180
     cacgtgcacg gccagtcatc gacggcgcca gccacactca agtcgctgca gctgcacaac      6240
     tttggtatgc atcatccgat gccaaggccc acgtccacgt cgtgcaccaa cagcttcaac      6300
     agacgccaca tacgtaggcg caagagcaag cttagtaagc gcctgctgaa cggcgatagc      6360
     gaagaatcag tacgctgctc atactgctcc gtattgaatg tgaatgagaa cgacttgcgg      6420
     atttcattcg agaacacctg caccgactcg ctggtcaccg ctgctaatat gcgaccaagg      6480
     aaccgaaatg gtgcactttg atgatgtgtc gttgtacggc actccgaaag aggagccata      6540
     tgctgtgctt taatctgcat tggcttcact ctttggtgga tcatcgacgc aaagaagtcc      6600
     gcgaagcact tgcgaggagt cgtcgctgga attgggtcgg tcgaggacga ccttacactt      6660
     gagggggggg t                                                           6671
//
ID   Gypsy-1B_DHyd-LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1B_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-452
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2424-2424 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites.
XX
SQ   Sequence 452 BP; 164 A; 82 C; 77 G; 129 T; 0 other;
     agttaactta taacacttag ttagcttata acacttaatg taaggtatta ttcaacactt        60
     attatcgggt gctagacaag ttaaggaaca gccctggcaa gggcaactct acttacgccg       120
     gtgaggctat gatttgtaaa aatatagatc agtctcgtgt tttaactcgt actgatagga       180
     catgctaaaa attggtgtca tataagtaaa actaaaaata gtgaatataa taagaaaaac       240
     caataaaatt aactgtttcg attattcaaa aaagaacaat taaaagcagg gttaaaaagc       300
     gttcttccag taaaccgctt aaataaatat tcactccgtc atttgctcgt taaatggctt       360
     atttcattgt ctgagcccga ggccagcaat aagaggcaca gtcgcctctc aacctaactt       420
     tcagtcacca caggactgga aaacatataa tt                                     452
//
ID   Gypsy-1B_PPo-LTR repbase;    DNA;    INV; 115 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1B_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-115
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2963-2963 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 115 BP; 28 A; 27 C; 22 G; 35 T; 3 other;
     tgtgacgtag gtacctgtat ttcagcggtc gggttatacc aawtattgta catkcttaag        60
     kcagtcggat tatacatctc gaacctaacg cccgtgtttt attccgtaca ccaca            115
//
ID   Gypsy-1C_PPo-LTR repbase;    DNA;    INV; 113 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1C_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-113
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2964-2964 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 113 BP; 26 A; 26 C; 23 G; 38 T; 0 other;
     tgtgatgtag gtacctgcat tctggtcggg ttatacgacg caattgtatg cattgacttt        60
     agtcggatta tacatctcga acctaacgcc cgtcttttat ttcgtacacc aca              113
//
ID   Gypsy-1_AA-I repbase;    DNA;    INV; 5335 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AA_;
KW   Gypsy-1_AA-LTR; Gypsy-1_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5335
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 971-971 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4338-4820] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           384..5177
FT                 /product="Gypsy-1_AA-I_1p"
FT                 /translation="MEGVNNDYSWLSFPTSQPMMPRIHRVQFASTPRSTVG
FT                 ENDGNYHVGQPRQQANNNLPDGDDRAPQQAEPSVASIPEAAEISEARGQGI
FT                 SGGSENNTAELLERNIESQNVLVDMIRTLNRRIEALERNVVDSRPGPSEQP
FT                 ALGPRNERPSSAAMHSEGRCDPTILHAAPTFVNNPPEPENFMRFTAPNFTA
FT                 TVPPRLPQAYSTAFGDPTYAIYHPIGAPASRFAGLATGFSTSGHALNAGWP
FT                 GGSVPTGDNGLQPSFFQPMQGPHGIGSKHNTGTGGMAPTSLNEGQTSRIGL
FT                 FPRPTFRGENDDRHPIEFLTEFDRFCYHQGLVELEKLPVVLSCLTGEAKVW
FT                 ARGFEYLFRDYTTFVHHFKENFWGQTAQRQVSEKITRGNYVQRNGSRMAEY
FT                 FLGIVAKARYLTPPPTERELIQHLSRHFPRNVQHLLGSCMDIGSGYNILQS
FT                 EDRFINGSLRYNNGLARENFNQPNWRNREAPSVRSSRGAPNLNVGGIAGTN
FT                 NVRMAMVEEEESVEGIDPAVLTVFVGREELLESESDTKVKENRKFKRSSYI
FT                 TVDLEGMQFNALVDSGCELSCISIDLYDQLKKANITMPELPMKTISLRGAF
FT                 GKKSKNVNLQVLLEISIGQRTFDVPFVVVRELINSMILGEDFQDNYAVWIH
FT                 QDEKKIRLLHNNVELWVDFSVGGKRSRCIEHVVLCETMINFDGEEDRQLEQ
FT                 DAAQISSLVLTEEERQVWKELQKEFEDIFSDQKPGLTSEYCHEILVEDDTP
FT                 FNQKQYPIPFSRVSKVDEKLHLMEQWGVISRSATAYVNPLVTTVKKNGDVR
FT                 VCLDARRLNKVLVKDHEKPPNIQEILQKFHGSKYFSTIDLTASYWQIPIKH
FT                 EHRKYTGFMHNSKTYVFNVLPFGLNTAVASFSRAMDLILGPEILEFVEKYI
FT                 DDLMVHSATFSEHITHLRRLFLRLRDAGLKVSISKSTFFQEQVDFLGHIIG
FT                 QNGISIDPAKTAAIRNFPTPTSVQDLRSFMGLASYVARFVPNFAMKARPLY
FT                 DLLQNHRTWSWGTSQARAFLELKDLFLEHTMLNHPNFNQQFVVQTDSSIRG
FT                 IGAVLLQKDEFDNNRIISYASRALKPAEANYTVTELEALAIIWALDKWRQY
FT                 LLGRPIKIMTDHKALIFLKQCKLLNGRLTRWILFLQQYDFEIEHVKGSTNT
FT                 IADVLSRYPPGTRSQEVKDDESLFTIARLSASERELRASMKDLEELQDQDL
FT                 QIKKIKQSFSNTDVVTKGKNRYKMGDKILFMRTIKDGDWRIWLPKALIPNL
FT                 LKVYHEEKGHFGVYKTTNSIKRSVYWRGMRKDIKNFIKQCLVCQLAKNQNF
FT                 KLVGKCRSILPREKNQIISVDLYGPLPIGTAGVRHIFVILDVFTKFVTLCS
FT                 IRKPTAPVLWRRIEKYIKDHGKPEALLCDQGTQFTSKVWAANCELQGIRLI
FT                 HTCVRHPQANPVERVMREISRLCRTYCQENHKTWANKIGNFAELLNAVCHE
FT                 STNCSPYELQFGVKPTDTLRNLIKYPSGDAACVNLEAVRATMRRKANARNS
FT                 KAPPRTKVFRVGELVLLRANPMSSESEGEIKKFFMIYEGPYKVEKICQDDV
FT                 YILTHPHHGKERGRFHVSSLKPYFGPNGPPQ"
XX
SQ   Sequence 5335 BP; 1629 A; 1107 C; 1271 G; 1328 T; 0 other;
     tctgggggct caaccgggat cagaagccat cccgaaatat atctttctcg gttaagacgc        60
     gacgacgacg ccagcaatcc attgttcgcg gtggctaata taaacgatat ccatgtgaga       120
     taagggagaa cgtggatggg tccaagtgaa tagcaaggag tggtcacatc taaaacagtt       180
     cggcgaggtg gtgagaaagt gagattgttc gggtggagat attcagaagc gatgagtgaa       240
     acagcagcat gtgctggagt gcttttcaaa tgtcggtgtt agtggcctat gagatgagtt       300
     gaaaatagtt atcgtttgga agagagtatt aggaaattta agttagtgat agtgttgcat       360
     cagaatatcg tagagataca cagatggaag gggtaaataa cgattattcg tggttgagct       420
     ttccaacaag tcaacccatg atgccgcgga ttcatagagt gcaatttgct tcaacgcctc       480
     gatccacagt gggcgagaat gatggaaatt accatgttgg acaaccccga cagcaagcaa       540
     ataataattt gcctgatggg gacgatcgag ctccacagca ggcggaaccg agtgttgcgt       600
     caattcccga agcggctgaa atatcagagg cacgtgggca aggaatatct ggaggatcag       660
     aaaataatac tgcggagctt ttggagagaa acatagagag ccaaaatgtg ttggttgata       720
     tgattagaac attaaaccgt cgtattgagg ctctggaaag aaatgtagtt gacagtagac       780
     ctggacctag tgagcaacca gcgttaggac cacgcaacga aagaccatcg tcagcggcaa       840
     tgcattcaga aggaagatgc gatccaacaa tacttcacgc agcaccaacg tttgtcaaca       900
     acccgccgga accagaaaat tttatgagat ttacggcacc aaactttacc gctactgtac       960
     caccaagact acctcaggct tacagtacag cttttggaga tccaacgtat gctatatatc      1020
     atccgatcgg agctcccgct agtagatttg cagggcttgc gactggattt tcaactagcg      1080
     gacatgctct aaatgcagga tggccaggtg gtagcgtacc aacaggagat aatggattgc      1140
     aaccaagttt ttttcaacca atgcagggcc ctcacggaat cgggtcaaaa cacaacaccg      1200
     ggaccggcgg tatggccccc acctctctca atgaaggaca aacctcccgg attggacttt      1260
     ttccgagacc tacctttcga ggtgaaaatg acgaccgcca tccaatagaa tttctcacag      1320
     aattcgatcg cttctgttac caccaaggat tagttgaact agaaaagctt cctgtagtgt      1380
     tatcttgtct aaccggagaa gctaaggttt gggcacgagg atttgagtac ttgttccgag      1440
     attacaccac gttcgtacac catttcaaag aaaatttttg gggacaaacg gcgcagcgtc      1500
     aggtttccga gaaaattacc cgaggaaatt atgtacaaag gaatggatcg cgaatggcag      1560
     aatacttttt gggaattgtg gctaaggctc gatatttaac accgccacct acagaaaggg      1620
     aacttatcca acatttatca cgacactttc cgcgaaatgt tcagcatttg ttgggatcat      1680
     gtatggatat tgggtctggc tacaacattc tgcaatcaga ggatcgattc atcaatggat      1740
     cgttacgata caacaatggg cttgcgagag aaaattttaa tcaaccaaac tggcgaaatc      1800
     gagaagctcc ctccgtaaga agctcgagag gagcgcctaa tctgaatgta ggtgggatcg      1860
     ctggtaccaa caacgtaaga atggctatgg tggaagagga ggagtctgtc gaaggaatag      1920
     accctgcagt attaacagtg tttgtcggtc gtgaagaact tctagaatca gaaagtgaca      1980
     caaaagtcaa agaaaacagg aagttcaaac gatcctccta cattactgta gacctggagg      2040
     gtatgcaatt taatgcactc gttgacagcg gatgcgagtt atcttgcatc tcgatcgatc      2100
     tatacgatca attgaagaag gctaatatta ctatgccaga gttgccaatg aaaactatct      2160
     ctttacgcgg agcatttggg aagaaaagca aaaacgtcaa tttgcaagtc ttgttggaaa      2220
     taagtattgg ccaacgtacg tttgacgttc cttttgtcgt cgttcgagag ttgatcaact      2280
     ccatgatcct aggagaggat tttcaagata actatgctgt ttggatacac caagatgaaa      2340
     agaagattcg gttattacat aataacgtcg agctgtgggt ggacttcagt gtaggtggta      2400
     agagatcgcg ctgtattgaa catgttgtat tatgtgaaac catgataaac tttgatggtg      2460
     aggaggatag acaattggag caagatgccg ctcagatcag ctccttggta ctcactgaag      2520
     aagaaaggca ggtctggaaa gagctacaga aggagtttga ggatatattt tcagatcaga      2580
     aacctggtct gaccagcgag tactgccacg aaattttggt ggaagatgac acgcctttca      2640
     accagaaaca gtatcctatt cctttctccc gggtcagcaa ggtcgatgag aaattgcatc      2700
     taatggagca gtggggtgtg atttcccgta gcgcaacggc ctatgtgaat cctcttgtta      2760
     ccaccgttaa gaaaaacgga gatgtcagag tgtgcctaga tgcgcgcaga cttaacaagg      2820
     tgctagtcaa agaccatgaa aagccaccca atatacagga gattttgcaa aaattccatg      2880
     gctctaagta cttttccaca atcgatttga ccgcctctta ctggcaaatt cctataaaac      2940
     atgagcatcg gaaatatact ggattcatgc ataattcaaa aacatacgtt ttcaacgtct      3000
     taccatttgg gttgaacacg gcagtcgcca gcttttctag agcgatggac ctcatccttg      3060
     gtcctgagat attggagttc gtagaaaagt acatagatga tttgatggta cattcggcta      3120
     ctttttcgga gcacataact catctacgcc gtctcttttt gcgacttaga gatgctggcc      3180
     tcaaagttag catatctaaa tccacttttt tccaagagca agtggatttt ttggggcata      3240
     taataggaca gaatggtatt tctattgatc ccgctaaaac agcagcgata cgaaatttcc      3300
     caactccaac atctgtacaa gatcttcgca gcttcatggg actagccagt tacgttgcac      3360
     gttttgttcc caatttcgct atgaaagcca gaccccttta cgacctgctc caaaatcatc      3420
     gaacatggag ttggggtaca agccaagccc gagcattcct ggagttgaaa gatttgttcc      3480
     tcgaacatac catgttgaac catccgaact tcaatcaaca gtttgttgta caaacagaca      3540
     gttctattag aggcatagga gctgttttgt tgcagaagga tgagtttgat aataatcgaa      3600
     ttatttctta tgccagtcgg gccctcaaac ccgctgaagc aaattacacc gttacggaat      3660
     tggaagcgct ggctattatt tgggcgctag ataaatggcg acaatatctt ttagggcggc      3720
     caattaaaat aatgactgat cataaggcgc ttatttttct aaaacaatgt aagttgctca      3780
     acggacggtt gactcgctgg atactatttt tgcaacaata cgactttgag atcgagcatg      3840
     tcaagggttc aaccaacacc atcgcagacg tgctttcacg gtatcctccg ggtacgcgaa      3900
     gccaggaagt aaaagatgac gaatcattat tcacgatagc ccgattgtca gcatccgaac      3960
     gagagttgcg tgcctccatg aaagatctgg aagaacttca agatcaggat ctacagatta      4020
     agaaaatcaa gcaaagcttt tccaataccg acgtggtaac gaaaggaaag aaccggtaca      4080
     aaatggggga taaaatacta ttcatgcgca ccattaaaga tggagattgg cgaatctggt      4140
     taccaaaagc attgattccg aacttgctca aagtctacca tgaggagaag ggtcatttcg      4200
     gcgtctataa aaccacaaat tccatcaaac gatcagttta ttggagagga atgcgtaagg      4260
     atattaaaaa cttcatcaag caatgtttgg tttgccagct tgccaaaaac cagaatttca      4320
     aactggtagg caaatgtcgg agtatccttc cacgagaaaa gaaccaaatc atttcagtgg      4380
     atctatatgg tccacttccc atcggcaccg caggcgtgag acacatcttt gttattttgg      4440
     atgttttcac caagtttgta acgctttgta gcatcagaaa acccacagcc cctgtactgt      4500
     ggcggcgtat tgagaaatat atcaaagacc atgggaaacc agaagcgcta ctttgtgatc      4560
     agggcaccca gtttacgtcg aaagtttggg cagcaaactg tgaacttcaa ggaataagac      4620
     tgattcacac ttgcgtacgt cacccacaag ccaacccggt cgaaagagtt atgcgagaga      4680
     tttcacgctt gtgccgcact tactgccagg aaaaccacaa aacatgggcc aacaagatag      4740
     gaaattttgc cgaattgctg aacgcggtat gccacgaatc aacaaattgt tcgccgtatg      4800
     agctgcagtt tggagtgaag cctacagata ctcttcgaaa cctgattaaa tacccatccg      4860
     gggatgctgc gtgcgtaaat ttggaagccg taagagcaac tatgagaaga aaagccaatg      4920
     ctcgaaatag taaggcccca ccccgaacaa aggtgtttcg cgttggtgaa ctggtacttc      4980
     ttcgagccaa tccgatgtct tctgaatcgg aaggagagat taaaaagttt ttcatgatct      5040
     acgagggacc atataaagtt gaaaagattt gccaggacga cgtatatatc ttaacccatc      5100
     cacaccatgg aaaggaaaga ggacggtttc atgttagctc actgaagccg tacttcggcc      5160
     caaatgggcc acctcagtaa agaaaaattt atcagactag gagtggctga aaccgcgaaa      5220
     ctgcagaatg tgccattcct agtgatcgct ggaggggggt gttgtaacgg accaccctaa      5280
     cagatggagc tgagtttgat cagcatagtg gaaagagagg cagtttactc cttat           5335
//
ID   Gypsy-1_AA-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AA_;
KW   Gypsy-1_AA-I; Gypsy-1_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-137
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 972-972 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 137 BP; 36 A; 19 C; 37 G; 45 T; 0 other;
     tgggtaagtg atcggaagct ttgcttacgg cgggttataa ttcgatagtt agttatcagt        60
     agttctctta attaatcggt cgagttctag tggtgggagt gctaaaaccg aagcggttat       120
     aaagtataat cgcttca                                                      137
//
ID   Gypsy-1_ACe-I repbase;    DNA;    INV; 5498 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-5498
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 726-726 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(663..995,929..1777,1719..2426)
FT                 /product="Gypsy-1_ACe-I_1p"
FT                 /translation="MATHQPSTSRENGEIANNPPVANAEIEAEIGRLRDTI
FT                 GERAREASIQSRQEEILDRMMEAITGLQDRMSRMEIANYDRENFRLTYPDD
FT                 RALNVTYGRRMTCGKQEIDPWDISVKRHIRTQDDVREARNRPVGYLRLKDA
FT                 RSLIPEIDGHSRQKMQEFISASIYAMEKINFAEKSALLEEILNTKLKGKLL
FT                 LDFQTRSVADFEQLRREIEANYLGKRGTSHLQLEFNALKQKPGESAHTYGR
FT                 RVDTLAMELYESLIEKRENTSEQKRAILETIQDQALLNFELGLREDIKLVV
FT                 RSQKYSSLQEAINAASAEERVKGPTPRANNNDRNKYDQSQNSKNSSVQCSK
FT                 CGKVGHYGRDCRSSRYANRFSLPRADKPASINAIEKFCTYCKKAGHKRNEC
FT                 MPSRNFAHIAKKQDIKETSAERTARQGAEAIHAKRDTDRKTKRVNTAEIRR
FT                 NKRQSESEESSYASSEEEKEKRRMRKTRAASEHQITQVTGRYANTGLRLVI
FT                 LPIKEMKKGRINLLLDTGATLTLIKVGNLKGETLIREKPMALTGVTGHQVK
FT                 TIGKIRATVRLGDKEIRHTMHVVRDDFPVDYEGILGMDFLQKHKIRSDQKN
FT                 YLQIDGITLKLHPYRKITLTPPQRNDSASGHR"
XX
SQ   Sequence 5498 BP; 2003 A; 1111 C; 1249 G; 1131 T; 4 other;
     atttgatggc agcggtggga tccacacacc tgactcagga cccgggagcg gcgacgatag        60
     cagcaacagc ctgtaaataa agtggatcag ttaaaacaag gaaggcggaa agcagaagct       120
     agatccccat tcaaggcgag cacccggtat agcagccgac gaccaggacg cagatagcag       180
     cgtaacccga gaggcgcgac ctaccacacg gtgactcagc atacgtcagg caacgaacag       240
     cggacaagta acatgcgatt aaccgcttta atgtaagtcc gaaaaacctt attgcaatca       300
     ttgtaaacgg ataaatgtcc ggaagcgaaa acaatcgcga caggcgtagc gctccgatac       360
     cttcgcgaat atacagcgag cctgtaccag ggcgtcctag ccaaatcctg tgcggattgt       420
     cgaagaagcc gtgcgagaca tacgcgacaa cgtgcgccgt gtgttggaac cgcgatattc       480
     aagcgatagc gcatccgatt cggaacctca tccgaatatt gttatcgagc gtgtaattcc       540
     cattcgtgga tttagatcac agtttactag ctgataatag gatagaacaa cgagaaccct       600
     cgttaatttc atacgagagt aatttatttg taaacgcacg cactaattcg ataccaggag       660
     atatggcgac gcatcaaccg tcaacctcgc gcgagaatgg tgagatcgcg aacaatccgc       720
     cggtagcgaa cgcggaaata gaagcagaga taggtcgtct cagagatact ataggagaac       780
     gcgcgcgcga agcatcaatt caaagtaggc aagaggaaat attagataga atgatggaag       840
     caattacggg attgcaagat agaatgagca ggatggaaat tgcaaattac gatcgcgaaa       900
     acttccgact aacgtacccc gacgatagag cgttaaacgt cacatacgga cgcaggatga       960
     cgtgcgggaa gcaagaaatc gacccgtggg atatttaaga ttaaaagatg cacggagttt      1020
     gataccggaa atagacggac attcgcgtca gaagatgcag gaattcataa gcgctagtat      1080
     ctatgcgatg gagaagatca acttcgcgga aaaatcagcc ttattagaag aaatattaaa      1140
     cacgaaattg aaaggaaaac ttctattaga tttccaaact agaagcgtgg cagacttcga      1200
     acaattacgg cgagagatag aagccaatta cttaggaaaa cgcggaacat cacacctaca      1260
     attagaattt aacgctttaa aacaaaagcc aggcgaaagc gctcacacct atggacgacg      1320
     cgtggatact ttagctatgg agctatacga atcgttgatc gagaaacgag aaaatacaag      1380
     cgagcagaag cgagccattt tggaaacaat tcaggatcaa gctttattaa atttcgaact      1440
     gggactgcgc gaagatatta aactagtagt acgatcacaa aaatattcaa gcctgcaaga      1500
     agctatcaat gcagcaagcg cagaagaacg cgtaaaaggg cctaccccac gagcgaataa      1560
     taatgatcgc aataaatatg atcaaagcca aaactcaaaa aattcgagtg tacagtgcag      1620
     caaatgcgga aaagtaggcc attatgggcg agactgtcgg tcaagccgtt acgctaacag      1680
     attttcattg ccccgagccg ataaaccagc aagtataaat gccatcgaga aattttgcac      1740
     atattgcaaa aaagcaggac ataaaagaaa cgagtgctga acggacggcc cgacaaggag      1800
     ccgaagcaat acacgcgaag cgagacaccg atcgtaagac gaagcgtgta aacactgcag      1860
     agataagacg aaataagcga caaagcgaga gcgaagaatc ctcgtacgct agcagcgaag      1920
     aagaaaagga gaaaaggagg atgcgaaaaa cgcgagccgc tagtgagcat caaattacgc      1980
     aagtgaccgg gagatatgcg aataccggtc ttagacttgt aatactaccg atcaaagaaa      2040
     tgaagaaggg tcggataaat ctactattag atacaggagc tacacttact ttaattaaag      2100
     taggaaacct aaaaggcgag acacttatac gagaaaagcc aatggccctc accggcgtga      2160
     caggccatca agtaaagaca atcggaaaaa taagagcaac ggtgcgttta ggcgacaagg      2220
     aaatacgaca taccatgcat gtcgtgagag atgatttccc tgtcgattat gaaggaatcc      2280
     tcggaatgga ttttctacaa aagcacaaaa ttagaagcga tcagaaaaac tatttgcaaa      2340
     ttgacgggat aactttgaaa ctccacccgt acaggaaaat aacgctgacc cctccgcagc      2400
     gaaacgatag tgcgagcggt cacagataaa aatcatgtgg gaatagtcaa atcagaggaa      2460
     actagaccag gaatatttat cgggaattgc ctagtagcac ccgacgaata tacgtgccca      2520
     atcagcatgt taaatactac gggagaaaac gtcgaaataa ttacgccact cgtaacaata      2580
     gaagagttac gggcgagtga ccgagagaac gtaacataca cacactgcaa aagacaggta      2640
     acgaaagcgg cacactaaca ctaccgcggc acgagcgtgt acgaaagcag ataagaaccg      2700
     agcatctaaa caaggaagaa aagaaaacca tcgagcaaat atgcgagaac tttaatgaca      2760
     ttttccactt agaaggagat atattaacgc acacaacagc ggtagcgcat gaaattaata      2820
     cgcgcaccga tagtgcaccc gtaaatgtgc gaccttatcg gttgccggaa aaacataagg      2880
     aagaagtgaa ccaacaaata aagaaaatgc tacaagacga tattattagt cctagcgcga      2940
     gtcagtggaa cgcgccacta ctggtcgttc caaaaaagag cgacgcttag agtagtggta      3000
     gatttcagga aacttaacga attaacaata ggctcatttc ctctaccaaa cataaccgac      3060
     attttagatc agttaggaaa cgccaaatat ttctctacac tggatttagc atcgggatat      3120
     caccaaattc ctatgagtaa ggaacacaaa aataaaactg ccttctctac ctcgcacgga      3180
     cattatgaat ttaaccgaat gccgttcggg ttaagaaatg cacccgcgac gtttcaaaga      3240
     ctaatgaacg caatattagc gggaatacaa ggtttgagat gcctcgtgta cctagatgat      3300
     atagttattt acggaccgag cctagaggaa cataataagc gtcttgtcga ggtaatgcaa      3360
     cgactacgta aatataattt gaaactacaa ccagacaagt gcgagttcct acgaaaggaa      3420
     ataatatatc tcggacatat aataaccgaa gaaggaatac gtccagatcc gagtaaatta      3480
     agcgctgtaa aggattttcc tgtgccgaag aaaattaaag atatacaatc gtttatcgga      3540
     ttagccggat actacaggaa attcatcgaa aatttttcaa aaattgcgaa tctctaacaa      3600
     gcttgactaa aaagggagtt gcattcgact ggaaaatgga acaacagaac gcattcgaat      3660
     tattaaaagt gaagctcaca acagcactta tactaagtta cccggatttc actcgagaat      3720
     tcctggtaac cactgacgcg tcggaccttg caattggagc cgtattatca caaggccccg      3780
     taggtcaaga ccgtccgatt gcttacgcga gccgaatatt aaataaagcc gaaattataa      3840
     cactacggag aaagaattgt tagcgatagt ctgggctgtc aaatattttc gcccatatct      3900
     atacggtacg acttttacta tcgtaaccga tcacagacca ttagtctggc tttttaatgt      3960
     aaatgatcca ggctcgagat taatgcgctg gagattgaaa ttagaagagt atgactataa      4020
     gatcatacat aaggctggta agggtaatac caacgcagat gctctgagtc gaaatccgat      4080
     ccggaacgac gaacgcgtgc acaacgttca gtcaaaagag agggaagacg acaacaaaga      4140
     agacaaggag ggcaccacaa aggaatatac ggaagaagag aaacaacaaa tactatatga      4200
     atatcatgat gcatccgcag gggggcatca aggagtatca cgaacgataa aaagaataag      4260
     attgctaact ggcgtggcat cacgaaggat gtcgaaaact atattagtaa atgcgaattc      4320
     tgtcagaaaa ataaattgag tcagaagacg aaaatgcctc tcgtattaac ggatacaccc      4380
     gaaaaaccct tcgaaaagtg cgcccttgat atagtagggc cactgccgat tacgaacgaa      4440
     ggaaataaat atatcttgac ttttcaagat agcctgacga aattcagcaa agcgataccg      4500
     gtcgagaatc aagaggcgtc aacgattgcc aaagcatttg tcacaaaaat aatggagcat      4560
     ggagcatacc cgaaaaaatc cttacggatc aaggcactaa tttcacgagt gaattattta      4620
     agaatgttgt aaacttttga agattgagaa gataacagac aacggcgtat catcccgaga      4680
     gtaatggggc gttagagcgt tcataccgaa ctctcgcgga atatttacga cattatataa      4740
     acgacgaaca gacgaactgg gacgaatggt taccctacgc tatgttcacc tataatacta      4800
     cccckcacac cgccacagga tatattccat tcgaacttat atacggtcat caagcaacaa      4860
     taccaaccgc cctattacaa cctccgaaac cgacttatca tacgatgatt acgtgcaaga      4920
     attgagagaa agacttcgcg caacgagtca ggtggcgaga gagaacgtaa aacaagccaa      4980
     aattcaggcc aagaaacaat acgacagtgg agaaaaacct ttcaaggggc gatatggttc      5040
     tactctatga cgaaacgata agaagaggag atcaagaagc tagaatcgaa atagataggt      5100
     cctatacaat aatagaaaaa cataacgatg tgaattacat aataaaaatg ggacgaagac      5160
     taatacgcgt acacgcgaac cgaatgaaat catttattga gcattaagcg gatagttaga      5220
     gtagaaaatc gacaaattaa tagcagtatg ataatataag ttggtttaga aacaatgaga      5280
     tactgctact ttaattataa ttaatatcgt atgtatcact acatgtagtt aataagtgga      5340
     gactaaggcg ggaagacgca gaaatacaaa ggcgcakcga cgackccata ttatattaaa      5400
     cgattgtaag aaaaattgta ttgggaaaaa ttctgtaaga tagtggagcg agttaaggaa      5460
     actcgtatcc ccgtttcctt tctccawgga gggaggga                              5498
//
ID   Gypsy-1_ACe-LTR repbase;    DNA;    INV; 505 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-505
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 727-727 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 505 BP; 176 A; 102 C; 107 G; 120 T; 0 other;
     tgtcacgagt gctaattgca caagtgacaa ttgcgccacg aacgtgcaag aaatataaac        60
     gattaaataa atgattgccg aaaccgattt attaaatata ctcaaagtta cttttaaata       120
     attaatataa aagaagaccc tgagcgaata taaattgtaa acttaagaaa tgcggatgcg       180
     cggaagctgt cctcgcccga tacgcggaac gctgacgggc caacacggaa cgctcaagga       240
     tgacccgaaa aatcctgaat ataagcgcga ccgcggacgc ggtcgtcggt cagaaattta       300
     aagaaacttg tcgcgttact ctgtcgttta aacgaatttg taacagtatc taccgcgacg       360
     tggaaagtgc taagggaagt gtaatgaaat aaccactgtt atgtgtgaag ttaaatatat       420
     tatattttaa aaactacaag gctattcaat aatccccgaa gtcctctgtg gatcccgaac       480
     cgtgccgtga aataccggca caaca                                             505
//
ID   Gypsy-1_AEc-I repbase;    DNA;    INV; 4127 BP.
XX
AC   .
XX
DT   23-APR-2011 (Rel. 19.03, Created)
DT   11-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AEc_;
KW   Gypsy-1_AEc-LTR; Gypsy-1_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-4127
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 659-659 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3070-3582] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           73..885
FT                 /product="Gypsy-1_AEc-I_1p"
FT                 /translation="MASGSGDPPSGNQDSGASSRIVEVPALTRVGIRSMPF
FT                 WKSKPDLWFVQMEAQFLTAGITVDETKYNYVIQCLDDDSLTEVSDIVLNPP
FT                 AMDRYAALKDRLVKSFADSAEKKLRRLLNEVDLGDRRPSQLLRRMRDLAQN
FT                 GVSEEVLKSLWLQRLPQQVQAILTASKHELEELSQLADRITDVLSTGVNAV
FT                 AAVTPTKANSADSQISALLDRMERLETRLSRDRSRASRNSRRRSRSRSQSE
FT                 SKPCWYHRRFGGKATKCTQPCSWKPAKQEN"
FT   CDS           647..3994
FT                 /product="Gypsy-1_AEc-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="RCRSSYTDKSQFGRFANIRASRSNGEIGNSFIARQVT
FT                 GLAEFSSQKPFKVTIGEQAVLVSSTFWRKSYQVYATLQLEASETGKLEAEL
FT                 SPAADSLAVATRRLIVRDRVTGIKFLVDTGADVSTIPVSRRDRTHISKQVL
FT                 YAANGTIIPTYGQKLLQLDLGFRRVFQWPFIIAEVDTFIIGSDFLARFNLL
FT                 PDIRHKRLIDGNTFLKVSAQLVSKTIPRLTAFADDCPYKEILSKFPEITRT
FT                 SITHKQTAHGVEHVIETTGPPVSNKARRLCPEKLKAAKQEFEYMMQQGLCR
FT                 PSKSPWASPLHLVQKKNSDWRPCGDYRKLNEVTVPDRYSIPFLQDSTHFLH
FT                 GKTVFSTIDLVRAYQQIPVRESDIPKTAIITPFGLFEFPYMTFGLRNAAQT
FT                 FQRFMDRVTVGLDFCFTYIDDILIASQDETQHKEHLKILFDRLQQHGIAIN
FT                 PNKCVFGQKSVSFLGHTISAEGIKPLPEKVQAIVEFQEPATVKGLRRFLGM
FT                 LNFYNRFLKDLASMQAPLLNAISGRKRNNNAKIEWTSELKQSFQRVKEHLA
FT                 QATSLAFPDSKATLSLQTDASDKAIGAVLQQYSNGFLQPLSFFSRKLTPTQ
FT                 TKYSAYDRELLAIYAAIKHFRYMLEGRNFHVITDHKPLVYAFKRKSDQMSP
FT                 RQTRQLLFISEFTTDVRHVSGAENIVADALSRVDTIVMPTSLDMQEIAEAQ
FT                 ASDDELQQLKQSTSTSLKLKKFTLSETASNIYCDTSEEEIRPYIPGPLRRR
FT                 VFDMVHQMSHPSGRATHRQIAQKFVWPSMAKDIKEWARTCLACQQSKIHRH
FT                 NHTSPTKIPVPDTRFEHVHIDIVGPLPPSKSFRYLLTMIDRFTRWPEAIPL
FT                 QDCTANTVAKMFFTHWVARFGAPRLITTDQGSQFEAQLFDTLTKLVGSKRC
FT                 RTTAYHPESNGIIERWHRSLKTALMCHGETQWTDTLPVVLLGLRTCLKEDL
FT                 GTSVAELVYGTTLKVPGEFFSSEEMPSDPRIFVEDFRVIMQKLRPRPTSHH
FT                 IRPKLFFHKDLYNCSHVFFKVEGNRRPLDQPYTGPHKVLERISDKVFAIEV
FT                 DGKCINATVDRLKPAYVIIQDSETTPSTASPSSTNIPVQGEPKTYPSPATK
FT                 RKTVRFKN"
XX
SQ   Sequence 4127 BP; 1210 A; 1035 C; 880 G; 1002 T; 0 other;
     aactggtgac cccgacgtga ttgcgtagcg ttctcattta acctaacgcg cgcgtcttaa        60
     caagccgcag acatggctag tggctcaggc gatcctccct cgggcaatca ggacagcggt       120
     gcatcgtcgc gtatagttga agtgcctgca cttacgcgag tcggaatcag atccatgccg       180
     ttctggaaat cgaagccaga cctatggttc gtacaaatgg aagctcaatt cctcaccgcg       240
     ggtataactg tagatgagac gaaatacaat tatgtgatac agtgccttga cgacgattct       300
     ttgaccgaag ttagcgatat cgtacttaat ccgcccgcga tggatagata cgccgcgctc       360
     aaagataggt tagttaaaag cttcgcggat agcgccgaaa agaaactgcg taggttatta       420
     aacgaggttg atctaggtga ccgccgcccg tcgcaattgc tccgtcggat gagagatctc       480
     gcgcaaaatg gcgtgtcaga agaagtgctt aaatctttat ggctgcagcg cctaccacaa       540
     caagtgcagg ctatattaac agctagcaag cacgaactcg aagagctatc gcaactagca       600
     gaccgaataa cagacgtgct atccactggc gttaacgctg tcgcagcagt tacaccgaca       660
     aaagccaatt cggcagattc gcaaatatcc gcgcttctag atcgaatgga gagattggaa       720
     actcgtttat cgcgcgacag gtcacgggcc tcgcggaatt ctcgtcgcag aagccgttca       780
     aggtcacaat cggagagcaa gccgtgctgg tatcatcgac gttttggcgg aaaagctacc       840
     aagtgtacgc aaccctgcag ctggaagcca gcgaaacagg aaaactagaa gctgaactat       900
     ccccggcggc agatagtttg gccgtggcaa ctcgccgtct catagtcaga gaccgtgtca       960
     ccggcatcaa atttttggtg gacactggag cggatgtctc gaccattcct gtctcaagac      1020
     gcgatcgtac tcacattagc aaacaggtac tctacgctgc aaacggaacg atcatcccta      1080
     cgtatggaca aaaattactc cagcttgatt tgggattccg tcgtgttttt caatggcctt      1140
     tcataatcgc cgaagtggac accttcatta tcggctcaga ttttctagca cgtttcaact      1200
     tgctgcctga catacggcac aagcgtttga tcgacggtaa cacgtttctt aaagtctctg      1260
     ctcagcttgt cagcaaaact attcctcggt taacagcgtt tgccgacgac tgcccataca      1320
     aagagattct aagcaagttt cctgaaataa ctagaacgtc gatcacgcac aaacaaaccg      1380
     cacacggagt ggaacatgta atcgaaacaa cgggtcctcc tgtgtcaaac aaagccagac      1440
     gactctgtcc agaaaaactc aaagcagcta aacaagagtt tgagtacatg atgcaacaag      1500
     gcttatgcag accttccaag agcccttggg ccagtcctct acatcttgtg cagaagaaga      1560
     atagcgattg gcgtccgtgt ggagattacc gcaaactcaa tgaggtaacc gtgccagatc      1620
     gttactcaat tccgttcttg caagacagca cacatttcct gcatggcaaa accgtgttct      1680
     ccacgataga tctagtgcgt gcataccaac agattccagt ccgcgaatcg gatattccga      1740
     aaaccgcaat cattacaccg ttcggacttt tcgaatttcc ttacatgaca ttcggacttc      1800
     gtaacgcagc acaaactttt caaagattca tggaccgggt aactgtagga cttgacttct      1860
     gttttactta tatcgatgac attttaatcg cttcgcagga cgaaacgcag cataaggagc      1920
     atctaaaaat actgttcgac agacttcaac agcatggcat agcaatcaat ccgaataaat      1980
     gcgtgttcgg gcagaagagc gtcagcttcc tgggacatac gatcagcgct gaaggcatca      2040
     aacctttacc cgaaaaagtc caagctatcg tcgaatttca ggaaccagct acagtcaaag      2100
     gacttcgacg tttcttagga atgctcaatt tctacaaccg gtttctcaaa gatctcgcaa      2160
     gcatgcaagc accattgcta aatgcaatct cgggacgtaa acgcaacaac aatgcgaaaa      2220
     tagaatggac ttctgagctc aaacaatcct ttcaacgagt taaggaacat ctcgctcaag      2280
     ccacctcgct cgcatttcca gacagcaagg caacactctc gttgcaaaca gacgcctcag      2340
     acaaagcaat cggcgcggta ttgcaacagt acagcaacgg atttttacaa ccactcagct      2400
     tcttttcaag gaagctcacg cctacgcaaa caaagtatag cgcatatgat agagaattat      2460
     tagctatcta tgcggctatc aaacattttc gatatatgct agagggacga aattttcacg      2520
     ttatcacgga tcataaaccc ctcgtgtacg cattcaagag gaaatcagat caaatgtcgc      2580
     caagacaaac ccgtcaacta ctcttcattt cggagttcac aaccgatgta cgtcacgttt      2640
     caggcgccga aaacattgta gcagatgcat tatctcgcgt cgacactatc gtgatgccaa      2700
     ctagtctcga tatgcaagag attgcagaag ctcaagcctc ggatgacgaa ttgcaacaac      2760
     tgaagcaatc tacatcaacg tctttgaagc tcaaaaagtt taccttatcg gaaacagcat      2820
     ccaacattta ctgtgacact tcagaagaag agatcagacc ttacattcct ggaccattac      2880
     gaagacgagt ttttgacatg gtgcatcaaa tgtctcatcc aagcggcaga gcaactcacc      2940
     ggcaaattgc gcaaaaattt gtgtggccct ccatggctaa ggacattaaa gagtgggccc      3000
     gcacttgtct agcatgccag caatctaaaa ttcatcggca taaccatacc tcgcctacca      3060
     aaataccagt accagatact cgtttcgagc acgtacatat cgatatcgtc ggtcctctac      3120
     ctccatccaa aagtttcagg tatttattaa caatgattga ccgatttact cgttggccgg      3180
     aggctattcc attacaggat tgtacagcaa acacggtggc gaagatgttt ttcactcact      3240
     gggtagccag attcggagct ccacgcctga tcacgactga tcagggctcg caattcgaag      3300
     cgcagctgtt cgacacatta accaaactcg tcggttctaa acgttgtcgg acaactgcat      3360
     accatccaga atctaatggc atcatcgaac gatggcatcg ctctttaaaa actgcattaa      3420
     tgtgccacgg tgaaactcaa tggactgata cactgccagt agtattactc ggactgagaa      3480
     cttgtctcaa agaggatcta ggcacttctg tagcggaatt agtttacggc actacgctca      3540
     aagtaccggg tgagtttttc tcctctgaag aaatgccgag cgacccacga attttcgtcg      3600
     aggatttccg cgtaattatg caaaagttgc ggcctagacc aacctctcat cacattagac      3660
     ctaagctatt tttccataaa gatttgtata actgctctca cgtcttcttc aaagtagaag      3720
     gcaacagacg tcctctggac caaccataca ccggaccgca taaagtatta gagcgcattt      3780
     cggacaaagt ctttgctata gaagtcgacg gcaaatgcat caacgccact gtcgatagac      3840
     ttaagcccgc ttatgtaata attcaagact cagaaactac tccgtccact gcgtctccgt      3900
     cttcaactaa cattccagtg caaggtgaac caaagacata tcctagtcca gcaaccaagc      3960
     gaaagactgt tagatttaag aattaattcg cgcaatgtta cgttaagcaa cgaccaacaa      4020
     gtataagttt ctgtttgttt catttaattt tattttctgt tattttcgtt ctagcgataa      4080
     tttaaccagt atttctttcc ttaacgttta cactgggagg ggagtac                    4127
//
ID   Gypsy-1_AEc-LTR repbase;    DNA;    INV; 543 BP.
XX
AC   .
XX
DT   23-APR-2011 (Rel. 19.03, Created)
DT   11-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AEc_;
KW   Gypsy-1_AEc-LTR; Gypsy-1_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-543
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 660-660 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 543 BP; 117 A; 146 C; 122 G; 158 T; 0 other;
     tgcggcgctg cgagcgccag ttgcggcgct gcgagcgtca gtcgcggcgc tgaagttggt        60
     ccttctttcc ggctctcctt tctttccctc tctctggtgt catggcgttc tgcgtgcgga       120
     cctcgtgtaa gcctctgcga tagatagtaa gttaaggctc ggtaagatta agaatcacct       180
     tgtgttcact gcgagatcga catcgattac tgctcatgtc attcggtaat tgttagcgtc       240
     gtcagataaa tactcagtgt atattttctt agtttcccgt attctaacct agcaacgcga       300
     taccgatatc cgagccgtct tacgcacgca atcacgtctc tatttttgta atctatactt       360
     tctaaataat cattcaagtt tgtattaaac cgccttatgg cataatgagt cagaatcaat       420
     gagtagcatt cattcgcgaa cctaacgatt tcccgccaat tgtccttcgc cgttagttgg       480
     tcatcgccgg cgcccagaca cgctcggcgc cacattgggc acagcagccg caacgtagcc       540
     aca                                                                     543
//
ID   Gypsy-1_AnFu-I repbase;    DNA;    INV; 6353 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.06, Created)
DT   25-NOV-2020 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6353
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2887-2887 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1461..2678
FT                 /product="Gypsy-1_AnFu-I_1p"
FT                 /translation="MQKVFEKVERLERIYDHVKQLNKCFRLCALTTLRENA
FT                 KELYDEIQEYLVKYETSIKEEILTVLAKKSRNLYFEINKYIKIHSERHPDY
FT                 LNTTLSENQSLNITVESPKVNTMATTIELMTVIANFVPVYNGNSDKLEHIL
FT                 SALTTCKAVTNNENLPIAIQAILSRLTGRARNAILGTPQTIDEIITALKNS
FT                 CEKTIGPDSIVTKLNATRQKGDFSSFAEEISDLTSRLEKAYISDNIGAEGA
FT                 KKLAMRAGIKALIAGTKHIDTKNTIKHRNCTSLAKAIELGTNNEAELQIAN
FT                 PKVEINYIQNRRGYESGNRRYFGRNDYSQQNQQYWRNNGQYHGRGNYSNNN
FT                 FRNNNRNQPPNRQYNTNRNQNVQSNQRNNNNWRNTRAPIHNTITAEEQNHF
FT                 LGQSRQSEESQY"
FT   CDS           2627..6304
FT                 /product="Gypsy-1_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RAEPFFRPISTIRRIPILTLNIDTDNFVKVKIEITKE
FT                 TCNTLIIDTGATVSVLKASKLKPDCKIDTSRRLILVSSSDHESETLGTAIT
FT                 TISFGDYSIKHEFHIIDDVQSIYTDGLLGKDFLKHRCIVDYVNWMIYFSTD
FT                 YGMISHPIEDNVNGNYILPKRSEVVRKIAIPNIAEDSIILSQEIQPGVFCG
FT                 NTIVSKRNQYIKFINTTDKDVSFNRGSFKPNFEPLSDYEQLKSKSSSSKDR
FT                 IEKIHNKIHIENIPQIARNELENLITKFADIFCLEDEPVSTNNFYTQEISL
FT                 KDNIPSYIPNYKQIHSQIGEIQTQVEKMLDNNIIEHSVSSYNSPILLVPKK
FT                 STGGTKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMS
FT                 GFHQIKLDENSRRYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGL
FT                 TPELAFVYIDDIIVTGCSARHHISNLGKVFDRLRKYNLKLNAEKCCFFKTE
FT                 VTYLGHKITDKGIYPDDAKFDTIRDFPIPTNADEARRFVAFCNYYRKFVQN
FT                 FAKIAKPINNLIKKDVKFEWTRECQEAFDKLKQCLLSPTILQYPDFNKQFI
FT                 ITTDASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHW
FT                 AINYFKPYVYGQKFVVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIE
FT                 YLAGKANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMTKRKDVQTEK
FT                 DKDKPIAETGNDQPAMWKTDRPSEVKKVMKIGTQKYKNNIEFIIFNHSYGK
FT                 ALGKVPMRKDVNGSQALEFALLEICKIAKQYGRNKLAWSEEDPIFKEYSQQ
FT                 TIKEIANRAITKFEIILFTPPRWITAEKDRLRIITDYHMTPSGGHIGQYRL
FT                 YQKIREKYKWKNMKEDIKKYVRNCKACIVNKTVRHTKEETVVTTTPTKPFS
FT                 IISIDTVGPLTKTNKNNRYAITIQCDLTKYVVVIPIHNKEANTIARALVEH
FT                 FILTFGTFMELKSDQGLEYNNEILSKISEILKIKQTFSTAYHPQTIGSLER
FT                 NHRCLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHTDTNYTPYELVFGRK
FT                 ASLPQDIFKTKIEPIYNIDQYYYEMKYKLQKSNEIARENLLKSKEKRQQNL
FT                 NQDTAPLNIKTGNQVYLVNENRRKLDPVYIGPFTIIEDHGPNCIIQNNITK
FT                 KTSTVHKNRLIKYTGE"
XX
SQ   Sequence 6353 BP; 2667 A; 1062 C; 1084 G; 1539 T; 1 other;
     tggcgaccgt gaccataagc tgcaatcgtc ggtaagaaaa aaaaatggca tcgcgtgatc        60
     gtggtaaaaa gcaaacacag catgtgaaca atagaaaaag tgatatggaa cataaaaaca       120
     gtgcgcaagc tacgaggtgc ggtagtaaaa cgttaaggtg aatgaaaagt gcaacgcagc       180
     gaagttctaa actgaaacag tgaggtgcga aaaagtgtaa ccatttctta ataaataatc       240
     aagtgcaaaa tgggtggttc cgtgcgtaaa ccagaagcga aagtaaatgg agatcatgat       300
     ataacgatca tccaaaatca agaaacacat acggaacaac acctaacgca ggaatttaaa       360
     ttgaatgtat tgtgcataat ggtgaccttt tggtagtgtt aaaattgttg aagcactgta       420
     caagttacta ttgaaacaag cgaggaaaca cgcgacggtg tcattccttc cacagtgaga       480
     aaaaaaaagt gattaactcg caattaacaa aatacgcaaa aaaaaaaaaa gagtgaactc       540
     atagcagaca atcagaacag aaaawgtgaa aaatcaatat ctagtggggc aagcaaaaat       600
     aagttttttt agtgaaaact gacaatataa aaatggcagt caaaactcca accttcatca       660
     atcaacccct aaacatcgat ggagcttatc aaaaaccaag acgagaagga tagttgggaa       720
     agcgatgcag agcaggacga ggaacgctgg caactgtacg taagagagcg gttcggccct       780
     agctacgccg aagtggacga gttaataacc agcataacag aagagatcct gaaaattgaa       840
     aaggagagat tccagccact ttgggacaac ttcgcggaga ctataacgag gtacaagttc       900
     taccaactta caaaaaggga aacgatgggt caattaattg aactgtatat ttccctgtgg       960
     gagtaaaata gtaataaaaa aaaaaacaac cccaaaaaca aaaataattt tcttacttaa      1020
     aatccgaaat ccgccttgac aaaattccac cttgaagaaa aaaaaaaata gttggatgac      1080
     aaaggaaaga aatttttttt gcatattact tatatataca aacaggaaag aaattttttt      1140
     tgcatatata tacaaacgaa agtaataaag aaattactta caaaaaaaaa aaaaaaaaga      1200
     agttggaact tttttttgat aaaaatgata ggatccgaaa aaccctatca aataagaaag      1260
     aaaaaaattg atatttttat tgaaaaatga tagggtgaac agaaaagaca cagacaggag      1320
     accacattac atacgacttt aatgacgaac taaatactat attgaatcga atttatattg      1380
     aatcgaacta tgttgaattg atcagtacta acaatgctaa ctgaattact ctactaaaac      1440
     aagaattcta ataagatata atgcaaaagg tatttgagaa agtagaaagg cttgaaagaa      1500
     tttacgacca cgtaaagcaa ttaaataaat gcttcagact atgcgctctt acgacattaa      1560
     gagaaaacgc taaagagcta tatgatgaaa tccaagaata tttagtaaaa tacgagactt      1620
     cgattaaaga agaaatatta acggtcttag caaagaaaag tagaaatttg tactttgaaa      1680
     taaataagta cattaaaatt cattctgaaa ggcatccaga ttatttaaat acgactcttt      1740
     cagaaaatca gtcattaaat atcacagtag aatctccaaa agtaaacaca atggctacta      1800
     caattgaatt aatgacggta attgccaatt ttgtaccagt atacaatggc aatagtgaca      1860
     agttagaaca tattttatca gccctaacaa catgcaaagc agtaacaaat aatgaaaatc      1920
     tgcccattgc aatccaggca atcctatcca gattaacagg acgagcaaga aatgcaattc      1980
     taggaacacc gcaaactatc gatgaaatca ttaccgcatt aaaaaatagt tgcgagaaaa      2040
     cgataggacc agactcaata gtgacaaaat taaacgctac aagacaaaaa ggtgatttct      2100
     caagcttcgc tgaggaaatt agcgacctta cgtcacgtct cgaaaaagct tacatctcag      2160
     ataacatagg agctgaagga gccaaaaaac tagccatgag agctggcata aaagcgttaa      2220
     tagcaggaac aaaacacatt gacacgaaaa acactatcaa acacagaaac tgcacttctc      2280
     tagcaaaggc tattgagcta ggtacaaaca atgaggctga attacaaata gcaaacccaa      2340
     aagtagaaat aaactacatc caaaacagac gaggctacga atcaggcaat cgaagatact      2400
     tcggtagaaa tgactattca caacaaaatc aacagtattg gagaaataat ggacaatatc      2460
     atggcagagg taactacagt aataataact tcagaaacaa taataggaac caaccaccaa      2520
     atagacaata taacacaaat agaaatcaga acgtacagtc caaccagcgg aataacaaca      2580
     attggcgaaa cacgagagcg ccaattcata atacaataac agctgaagag cagaaccatt      2640
     ttttaggcca atctcgacaa tcagaagaat cccaatacta actttgaaca tagacacaga      2700
     taatttcgta aaagtcaaaa tagaaatcac aaaagaaaca tgcaatacac taatcataga      2760
     tacaggagct acagtatcag tactgaaagc tagcaaacta aaaccagatt gcaaaatcga      2820
     tacatccagg agattgattt tagtcagttc tagtgatcat gaatcagaaa ctttaggaac      2880
     agcaattaca accattagct ttggtgatta ctcgatcaaa catgaatttc acattataga      2940
     tgacgtacaa tccatttata ctgacggatt attaggaaaa gattttttaa aacacaggtg      3000
     tatcgttgat tacgtaaatt ggatgatata tttttcaaca gattatggaa tgatttcaca      3060
     ccctatagaa gacaatgtaa atggaaatta cattttacca aaaagaagtg aagtagtacg      3120
     aaaaattgca ataccgaaca tagcagaaga ttcaatcatc ttatcacagg aaattcaacc      3180
     aggagtattt tgcggaaaca caatagtttc gaaaagaaat caatacatta aatttattaa      3240
     cacaacagac aaagacgttt cttttaacag aggatctttc aaaccaaact ttgaaccact      3300
     tagcgattat gagcagctaa aatcaaaatc aagttcatca aaagatagaa tagagaaaat      3360
     tcataataaa attcacatag aaaatattcc acaaatagca agaaacgaat tagaaaatct      3420
     tataacgaag ttcgcggata tattttgctt agaagatgaa ccggtttcga ctaacaattt      3480
     ttatacccag gaaatttcgt tgaaagataa cattccttct tatataccca actacaagca      3540
     aattcattca cagataggag aaatacaaac ccaagtagag aaaatgttag acaacaatat      3600
     catcgaacat tctgtttcgt catacaactc accaatatta ttagtcccaa agaaatcaac      3660
     aggaggaacg aagaaatggc gtttagtagt agatttccga caactaaaca agaaaatatt      3720
     accagataaa tttccattac cccgcataga tacaatatta gatcagttgg gaagagctaa      3780
     atatttcagc acattggatt tgatgtcagg tttccatcaa atcaagcttg atgaaaattc      3840
     tcgtagatac acagcttttt caacaccaac aggccactac cagtttacac gaatgccatt      3900
     tggactcaat attagcccaa acagctttca gagaatgatg gctatagcta tggctggttt      3960
     aacaccagag ctagcatttg tatatataga tgatataatc gttactggat gcagtgcacg      4020
     gcatcatatc agtaacttag gtaaagtttt tgatagactt agaaagtata atcttaaatt      4080
     aaatgctgaa aaatgttgtt tctttaaaac agaagtaacg tacttaggac ataaaattac      4140
     agataaagga atttatcctg atgacgcaaa atttgatacc atcagagatt tcccaattcc      4200
     tacaaatgca gacgaagcaa gacgtttcgt cgctttttgc aattattatc gtaaatttgt      4260
     acagaatttt gctaagatag ctaaacctat taataatttg attaagaaag atgttaaatt      4320
     tgaatggacc cgtgaatgtc aggaagcttt cgataaacta aaacaatgct tactttctcc      4380
     aacaattttg caatatccag attttaataa acaatttata attaccacag acgcatcgga      4440
     tatggcatgt ggtgcagtgt tatcgcaaat aacagacgga aacgatttac cagtcgcatt      4500
     tgcgagtaaa agtttcacac caggagaaaa aaataagcca atcatcgaaa aggagcttac      4560
     agctatacat tgggccatta attatttcaa accttatgta tatggacaga aatttgtagt      4620
     aagaacagat catagaccat tagcatactt atttggtatg aaaaatccta catctaaatt      4680
     gactaggatg agattagatt tagaagaatt tgactttgaa atagaatatt tagcaggtaa      4740
     agcaaatgtt gcggcagacg cactctcaag aataattctc aactcagatg acctcaaggc      4800
     atcaatacct aaatcgaaaa cgattttaat ggttaatacg agagcaatga caaaaagaaa      4860
     agacgtacaa acagaaaaag acaaggataa accaatcgca gaaacaggga atgatcaacc      4920
     cgcgatgtgg aaaacggata gaccttctga agtgaagaaa gttatgaaaa taggtacgca      4980
     gaagtacaag aataatattg aattcattat attcaaccat tcatatggta aagcgctagg      5040
     aaaagttccc atgagaaaag atgtaaatgg aagtcaagca ctagagtttg ctcttctaga      5100
     aatctgtaaa atcgcgaagc aatatggaag aaacaagcta gcatggtcag aagaagaccc      5160
     aatatttaaa gaatattccc aacaaactat aaaggaaatc gccaatagag ccattaccaa      5220
     gtttgaaata atattgttca ctccacctag atggataaca gcagagaaag ataggctgag      5280
     aataattaca gattatcata tgaccccttc gggaggacat ataggccagt acagactata      5340
     tcagaaaata agggaaaaat ataaatggaa aaatatgaaa gaagatatca agaaatacgt      5400
     acgaaactgt aaagcatgca tagttaataa gacagttaga catactaagg aagaaacggt      5460
     tgtaactacc acaccgacca aaccatttag cattatatca atagatacgg taggaccact      5520
     aacaaagact aacaaaaaca atcgatacgc aataaccatt caatgtgact taacaaaata      5580
     cgttgtagta attcccatcc acaacaaaga agcaaacact atagcaagag cactagtaga      5640
     acattttata ctaacttttg gaacatttat ggaattaaaa tcagatcaag gtttagaata      5700
     taacaacgaa atattgagca aaatttcaga aattttaaaa ataaaacaga catttagcac      5760
     agcttaccat ccacagacaa taggatcatt agaacgaaat catagatgtt tgaacgaata      5820
     cttaagaagt tatacgaatg aacaccatga cgactgggac gattggacga aattttacga      5880
     atttgtttac aacacgacag aacatacaga tacaaattac acaccatacg aactggtatt      5940
     tggaagaaaa gcgagtttac cccaagatat attcaagacg aagattgaac caatttataa      6000
     tattgatcaa tactattacg aaatgaaata taaacttcaa aaatcaaatg aaatagccag      6060
     agaaaattta ttaaaatcaa aagagaaaag gcaacaaaat ttaaatcaag atacagctcc      6120
     actgaacata aaaacaggaa atcaagtata cttagtaaat gaaaatagga gaaaattaga      6180
     tccagtttac attggacctt tcacaataat tgaggatcat ggacctaatt gcataataca      6240
     aaacaatatt actaagaaaa cttccacagt acacaaaaac agattaatta aatacacagg      6300
     agaataactt caatcatttg cattcattac gttattctat taaagggggg agg             6353
//
ID   Gypsy-1_AnFu-LTR repbase;    DNA;    INV; 865 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.06, Created)
DT   25-NOV-2020 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-865
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2953-2953 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
SQ   Sequence 865 BP; 320 A; 168 C; 152 G; 225 T; 0 other;
     tgtagcatat ttgctaaaca tcttattata atttaaatgt tatacagtat aaagttagaa        60
     ggtttatcac gtgacagaat tcaacacatt ttgccactca aaaagtcact taacctaaat       120
     caaaaggagg tcagatttaa aaaaacacag taacccacat tattaaatcg gcaactgcaa       180
     aaaaccgatg accaacgcat aaacgtaaat ttacacactt agggttacca acgagaatca       240
     atttcatagc cacccggtaa agatagctta ataagcggtt ttttgcatga acagcaaaga       300
     acggaacatc ggaaccacaa ttaataacaa atagcaccat cgttatttgt caccgatttc       360
     gttatagcct gaagataaat gtttgcgaca gaaaccaaaa taatggctat ttattatatt       420
     aagttataac tcaatatatg aactacttat taatattttt ataacaccca tagataaata       480
     agcaaactaa aagcttggaa aagggatata aataaagcca gtttaacctg acgaagagaa       540
     gtaggagatg aaccgccaaa gtgcgtgtta atcgtcaggt tggaatttat aaccaaccaa       600
     aaccatcttg tgttcttatt tcaagagctt cgagagtccc cctacccaag gtaaggcctc       660
     gatgtctcca tcaatccagt aagggaaatc tcttccagat ttctatgatc gcctggacga       720
     tcaagtccgc ccaaatgaag aagtatgtcg tccgaacgta aagtcgttgt taccgtgata       780
     tgattaacct tgcgtaaatc gataaatgtg acgcgggtac gaacggaaac gcgaagtaag       840
     caaatgtacg cgcgagcaca ttaca                                             865
//
ID   Gypsy-1_AnMe-I repbase;    DNA;    INV; 4060 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_AnMe-LTR; Gypsy-1_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4060
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6813-6813 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100.0% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..930
FT                 /product="Gypsy-1_AnMe-I_1p"
FT                 /translation="MENENATVPCAQHVYAGESVASSSSSSAAVAAIATPR
FT                 LNPPVMADTNIDAYFMSLEFWFAASGITAQHDSQRYNIVMAQVPPQKLGEL
FT                 RTIVENTPTSGKYPYIKSKLTEHFADSQQRRLHRVLSEMPLGDLKPSHLFN
FT                 EMKRVAGDSLGDTLLLDLWAARLPAHAQAAVIASRGDAADKTTIADAIVES
FT                 MSLRNISSIGQETTTTALNVTSSDQQIQDLKLAIDALSKRFDKIHPNNPQG
FT                 RSRSRARSTDADRARDTSNGPCWYHRTYGSNARVCRAPCSVGNWPSSSQQ"
FT   CDS           934..4041
FT                 /product="Gypsy-1_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RHSADAVEENGELSSAATICRLKIADCSTNMQFLIDT
FT                 GADVSVVPKGLKSARVKPSSIQLFAANGTAIEVYGEVLLKVNLGLRREFVW
FT                 SFLIADVSTGIIGADFLRKFDLLIDLKRGRLIDNTTNLESRGFLTRDIDIS
FT                 VKTFSAASPFVDLLTEFPQITHLAPMGTTTKSSVMHRIETTGQPVYARPRR
FT                 LSPEKFEAARNEFELLMKLGICRPSSSNWASPLHMVKKADGTWRPCGDYRA
FT                 LNAQTVPDRYPLPYLQDFTSMLQGKCIFSKIDLQKAFHQVPIHPDDIPKTA
FT                 ITTPFGMYEFLFMTFGLRNAAQTFQRLIHEVVRGLEFVFPYVDDLFVASNS
FT                 LDEHKQHLRQLFERLNDHNLTINVAKCEFGRDKLNFLGHAVSAEGIRPLPD
FT                 RVLAIQNFNLPSTVKELKRFLAIINFYRRFIPHAIEAQIPLLNMIPGNKRN
FT                 DCSPLSWTDNTLAAFDQCKQQLAQATLLSHPAKSAELSLWVDASDIAAGAV
FT                 LHQIVEGNVQPLGFFSKKFDKAQLRYSTYDRELSAIYLAVRHFKYMLEGRS
FT                 CHIYTDHKPIIYAFRQKLDKASDRQARQLDFIGQITTDIRHINGTENIVAD
FT                 LLSRISAIHTLPSMDFVALANDQKNDEELRKILQGTTESSLQLKLIEIPGS
FT                 NTQLYCDCSTNRIRPYVTPSFRNIALRAVHNLSHPGTRSTAKLMTERFVWP
FT                 NIRKDSIAFARSCIQCQRSKISRHTQSPLSQYPSPDDRFSHINIDIVGPFP
FT                 ISRGNRYCLTIIDRFTRWPEALPIPDMTASTIADALVSGWIARFGVPKYIT
FT                 SDQGRQFESSLFLELNRLLGSTHLRTTAYHPQSNGIIERFHRTFKAALLCH
FT                 DNEHWCENLAVILLGLRTTYKEDIKASPAEMVYGTTLRIPSEFFNDIGETT
FT                 NEAEFVANLRNAMRSLRPRQTSWHGSRNIFIPTELKSCKFVFIRNDSIRPT
FT                 LSPPYEGPYEVMDRTEKIFKVNVKGRTVSISIDRLKPAHILQESSASVPAP
FT                 PTSSSELPPTRTTRSGRRVVFPTHLQQYVS"
XX
SQ   Sequence 4060 BP; 1166 A; 955 C; 806 G; 1133 T; 0 other;
     gtggtgaccc cgacgtgatc cgtcaatatt tttcacaatt acgaacgaat tcaaacaatg        60
     gagaacgaga acgcaactgt accgtgtgct cagcatgttt atgctggtga aagtgtagca       120
     tcatcatcat catcatccgc ggctgttgca gcaattgcta ccccgcgtct taacccacca       180
     gttatggccg acaccaacat tgacgcatat tttatgtccc tcgagttttg gtttgctgca       240
     tctggaatca ccgcccaaca tgactctcaa cggtacaata tcgtcatggc ccaggttccc       300
     ccgcagaaac ttggtgaact tcgcacaatt gtcgagaata ctccaactag tggaaaatac       360
     ccatatatca aatcaaagtt gacggaacat ttcgctgaca gccagcagcg gcgtttgcat       420
     cgtgtgttgt ctgaaatgcc ccttggagat ttaaagccta gccatctttt taacgagatg       480
     aagcgagttg ccggcgattc tctaggggac accttgctgc tagacttatg ggcagctcga       540
     cttcctgctc atgcccaagc agcagtaatt gcttcgcgtg gtgatgccgc tgacaagacg       600
     actatagctg atgctattgt cgaatctatg agcttacgaa atattagctc tatcggtcag       660
     gaaacaacta caactgctct caatgtaaca tcgagtgatc aacagattca ggatcttaaa       720
     ttggcaatcg acgcattatc gaaacgattt gacaagatcc atcctaataa cccccaaggt       780
     cgatcccgtt ctcgcgcacg tagtacggat gctgatcgcg ctagagacac atcaaatggg       840
     ccatgctggt atcatcgtac ttacggaagt aatgctagag tatgtcgcgc accttgctct       900
     gtaggtaatt ggccttcttc cagccagcaa tgacgccact ctgctgatgc tgtggaggaa       960
     aatggcgaac tttcctcggc agccacaatc tgtcgactga aaattgcaga ttgttctact      1020
     aatatgcaat ttcttatcga tactggagcg gatgtttccg tcgttccaaa aggattaaaa      1080
     tcagccagag taaagccttc gtctatccaa ttgttcgccg ctaatggaac tgctattgaa      1140
     gtatacggtg aagtgttact gaaagtaaac ctcggcctcc gtcgtgaatt tgtgtggtcg      1200
     tttctcattg ctgatgtctc aacgggtatc atcggagcag attttttacg gaagtttgat      1260
     cttcttattg acttaaaacg tggccgcctc atagacaaca ctaccaattt agagtcacgt      1320
     ggttttctta ccagagatat tgacatttcg gtgaaaactt tttccgcggc gtcgccattt      1380
     gtagatttac taactgaatt tccacaaata acacacctcg cccctatggg tacaacaact      1440
     aagtcttctg ttatgcatag aattgaaacg actggccagc ctgtatatgc tagacctcga      1500
     agactttcac cagaaaaatt cgaagcagcc cgtaacgaat tcgaactttt gatgaaattg      1560
     ggaatatgtc gtccatcaag cagcaattgg gctagccctc tccacatggt caagaaagca      1620
     gatggaacat ggcgaccatg tggagactat cgtgctctta atgctcaaac tgttccggac      1680
     cgatatccgt tgccgtatct ccaggatttt acatcaatgt tacaaggtaa atgcatattt      1740
     tctaaaattg atctacaaaa agcatttcat caagttccta tacatccgga tgatattccg      1800
     aaaacagcta ttacgacgcc gttcggaatg tacgaatttt tattcatgac gttcggtttg      1860
     cgcaacgcgg ctcaaacctt tcagcgattg atacatgaag ttgtgcgtgg cttagagttt      1920
     gtgttccctt atgtcgacga cctttttgta gcgtccaatt ctctcgatga acataaacaa      1980
     catctgagac agttgtttga gagactaaat gatcacaatc tgaccattaa tgtagctaaa      2040
     tgtgaatttg gtcgcgataa gctcaatttt ttgggtcacg ctgtatctgc tgaaggaatt      2100
     cgcccattac ctgatcgtgt actagccatc caaaacttta accttccgtc gacagtaaag      2160
     gaacttaaac gattcctggc aataatcaat ttttatcgaa ggttcattcc tcatgccatt      2220
     gaagctcaaa ttccattatt gaacatgatc ccgggaaata aacgaaacga ctgctctcct      2280
     ttgtcctgga ctgacaacac tcttgcagct ttcgatcaat gtaaacaaca actcgcacaa      2340
     gccaccttat tatctcatcc tgctaaatct gctgagcttt ctctttgggt tgatgcctca      2400
     gacattgccg ctggtgctgt attacatcaa attgtggagg gaaacgttca acccctggga      2460
     ttcttttcca aaaaatttga taaagcgcag ctgcggtata gtacttacga tcgagaatta      2520
     tcagcaatat atttggcagt gcgtcacttt aagtatatgc tggaagggcg cagctgtcat      2580
     atttacactg atcataaacc cattatatat gcatttcgcc aaaaactcga caaagcttct      2640
     gatcggcaag cccgtcaact agatttcata ggccaaataa ctactgacat acgccacata      2700
     aatggtacag aaaatatcgt cgccgatctg ctgtctcgca tatcagctat acacacattg      2760
     ccttcgatgg attttgttgc gctggcaaat gatcaaaaaa atgacgagga actccgcaag      2820
     atattgcaag gtacaactga atcgtcgctg caattaaaat taattgagat tccaggcagt      2880
     aacacacaat tatattgtga ttgctctact aatcgtattc ggccgtatgt cacaccatca      2940
     tttcgaaata ttgcgctgcg agcggtacat aatttatcgc atcctgggac acgaagcaca      3000
     gccaaattga tgaccgaaag attcgtttgg ccaaatattc gaaaagatag cattgccttt      3060
     gcgagaagtt gtatacaatg ccaacgttca aaaatatcaa ggcatactca atcaccatta      3120
     tcccaatacc cttctccaga cgatcgattt tcccatatta acatcgacat agttggtcct      3180
     tttccaatca gcagaggaaa taggtactgc ttgactataa tcgatagatt tactcgatgg      3240
     ccagaggctt tacctattcc ggacatgact gcttctacaa tagctgatgc tctagtttcg      3300
     ggatggattg cgcgttttgg tgtaccgaaa tatattactt ctgatcaagg tagacaattt      3360
     gagtcatcac tcttcttgga attaaaccgc ctgttaggtt caactcacct gcgtacaact      3420
     gcataccatc ctcaaagcaa tggaatcatc gaaagattcc atagaacatt taaagcagct      3480
     cttctctgcc acgataatga acactggtgt gaaaatctcg cagtgatact acttggctta      3540
     agaacaacat acaaagaaga tattaaagca tcaccagctg agatggttta tggtaccaca      3600
     cttcgtattc cctccgaatt tttcaacgat attggcgaaa caacaaatga agctgagttt      3660
     gtagctaatt tacgaaatgc catgcgatca ttacgcccca gacaaacctc atggcatggt      3720
     tctcggaata tttttattcc caccgaacta aaatcatgta aattcgtctt tattcgcaat      3780
     gattccatac gaccaacact ttcaccaccg tacgaagggc cttatgaggt tatggatcga      3840
     acagaaaaaa tcttcaaggt caacgtgaaa ggtcgtacag tatctatatc aatagaccgc      3900
     ctcaaaccag cccacatcct acaagaatct tctgcaagtg ttcctgctcc acctaccagt      3960
     tcttctgagt taccaccgac tagaaccact cgttcaggcc gaagagtggt gtttcctacc      4020
     catcttcaac agtacgtatc ctagtctgga aggggagtac                            4060
//
ID   Gypsy-1_AnMe-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-165
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6804-6804 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100.0% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 165 BP; 51 A; 35 C; 42 G; 37 T; 0 other;
     tgtagcagcc cactgtgcag ttcgcgtggc tcgtacgcag agtacgagct gtcatcaaga        60
     gctgtcagaa ttccgtggcg tgaacgacca ttctgtttgg cgcccatttt gagagcagac       120
     cgatttggaa aagtaaaaat aaagaaaatt gaacaaaacg ctaaa                       165
//
ID   Gypsy-1_AnSt-I repbase;    DNA;    INV; 4563 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4563
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 786-786 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..3297
FT                 /product="Gypsy-1_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MEEEQRRLSQQFETPGTALLQPGYGQPLPPNAPAVEQ
FT                 QGSQASSVHFSPSLSSAPTSLHPPSLAPAASMQHPPSLPGVSQNGEPTMYQ
FT                 IMQLLRQLMTKIEQQPPASLPTNASQQQLPVVHPPSASQQQPLVSEIASQP
FT                 QQQHRSAPANPEQILDSLARNITEFRFEAEAGLTFEAWYSRYEDLFVSDAA
FT                 RIDDAAKVRMLMRKLGSMEHERYVNYILPRNPRDLTFEATVEKLKAIFGKA
FT                 ESLLTKRYKCMQIVKTKAEDFLAYACRVNRACVDFELNRMGEEQLKCLIFV
FT                 CGLKEDTDRDFRVKLLSRIEEHAEITLEQLSAECSRLVALKKQNAMIIGEK
FT                 EERVLAIQNGARRSHHGFRGKGLRSRPIHRDDRSGKPSNPCWFCGALHWVK
FT                 DCPHTNHKCRECGEVGHLEERCRKQKHRAGRKFYRPTRFAKTVTVCSVRAS
FT                 RKFVEVSINGVGIRLQLDTGSDISVIGRSAWEKVGKPSLVQPTVCAKTASN
FT                 ERLELLGEFRAEVAICNATKPAIIRVAQVDLLLLGADLIDLFALSSVPMDV
FT                 FCAKVSTTAQIPKELQSRFPEVFRGTGLCTKAQIKLQLKDNCRPVFRPKRP
FT                 VAYAMQATVEEELDRLVQMNVITPVDYSEWATPIVVVRKSSGAIRICGDYS
FT                 TGLNDALRPHEYPLPLPDDIFARLAHCKFFSKVDLSDAFLQVEIEERYRPL
FT                 LTINTHRGLYLYNRLPPGLKVAPAAFQQIMDAMLAGLCYTSGYLDDVVVGG
FT                 RTEEEHDENLNKVLQRIKEFGFTIKAEKCAFKTHQIEYLGHIIDRTGLRPN
FT                 PKKIXAIVNLPAPSNVNEVRSFLGAINYYGKFVPNMRNLRYPLDNLLKDGN
FT                 QFVWTKQCGEAFRKFKEILKSDLLLTHYDPTAEIIVAADASSVGLGATISH
FT                 KFPDGSIKVVQHASRALTKAEEGYSQIDREGLAIIFAVTRFHKMLYGRHFR
FT                 LQTDHKPLLRIFGSKKGIPVYTANRLQRFALALQLYDFEIEYIPTDKFGNA
FT                 DLLSRLISKHAKPEQEYMIAKKLQQLRKRTLYCAKCTATSNRVGQARSVMV
FT                 RNWPNSTTEGKH"
FT   CDS           3096..4550
FT                 /product="Gypsy-1_AnSt-I_2p"
FT                 /note="integrase."
FT                 /translation="IRQCRPAVAAHQQARETGAGVHDREEVAAATKKDPLL
FT                 REVYRYVQSGWPGKVSYGAELAQFHNRREALTTVGDCILFGERIVIPAALQ
FT                 QRCLRQLHQGHPGIQRMKAIARSFVYWPSLDSDIADRVASCEACQAAAKSP
FT                 PSQIPSCWPKPPGPWHRVHIDYAGPVEGAYFLIAVDAYSKWPEIIKTASIT
FT                 SFATISILRGIFARFGPPVTLVSDNGTQFSSEAFKEFCECNGIDHVRTPPF
FT                 HPQSNGQAERFVDTFKRSLKKIRARNVSLEEALDLFLLTYRSTPNPALDQR
FT                 TPAEVMFGRTTRTIHHLLRPPAASESTAKDDFREYQPGDLVYAKVYRANSW
FT                 NWIAGRIARRIGNVMYEVVSHDQRRLRRHVNQLRRRVASSSERNEMDQHQF
FT                 PLSLLLDEMSLTSRQQSPSASLPTEPASSSAAPALTGVQRAPASSPASSVQ
FT                 PEVQRAASSSGSSNTQQTQLPRRSSRTRRLPRRFSAYRLN"
XX
SQ   Sequence 4563 BP; 1178 A; 1140 C; 1202 G; 1042 T; 1 other;
     gtggcgacga ggaaatttgg taaaaaaaag tgatacacac gcagagcaac aattccttcc        60
     tcacgcaaac gccgtcgtac ggactcatcg atggaggaag agcagcgccg tctctcgcag       120
     cagttcgaaa ccccgggtac tgcgttacta caacccggat acggccaacc gctcccgcca       180
     aacgctccag cggtcgagca gcagggatct caagcgtcct cggtacattt ttcgccatcg       240
     ctatcatcag cgcccacaag ccttcatccg ccatcgctcg ctccagccgc ttcgatgcag       300
     cacccgccat cgctaccagg cgtgtcacaa aacggtgagc caacaatgta tcaaataatg       360
     cagcttctac gccaattaat gacaaaaatt gagcaacagc cgccagcatc actgcccaca       420
     aacgcatcgc agcagcagct accagtagtg catccgccaa gtgcatcaca gcagcaacca       480
     ctagtatcgg aaatcgcgtc gcaaccgcag cagcagcatc ggtcagctcc agccaatccg       540
     gagcaaatcc tggactcgct ggcgagaaac atcaccgaat tccgcttcga ggctgaagcc       600
     ggtctaacgt tcgaggcgtg gtactcgcgc tacgaggatc tgttcgtcag tgatgcagcc       660
     aggattgacg atgcggccaa ggtacgaatg cttatgcgga agctaggatc aatggagcat       720
     gagaggtacg tgaattacat tttaccccgt aatccccgcg atttaacatt tgaggctacc       780
     gtggaaaaat tgaaggccat tttcggcaag gcagaatccc ttttaactaa acgctacaaa       840
     tgcatgcaaa tcgtcaaaac gaaagctgag gattttttgg cctacgcatg tcgagtcaat       900
     cgggcatgtg ttgattttga gctgaaccgc atgggtgaag aacagctcaa gtgtctgatt       960
     tttgtatgtg ggctgaaaga agacacggat agagattttc gggtaaagct gctctcgcgt      1020
     atcgaggaac atgctgaaat caccctcgag caattatcgg cggagtgtag tcgtctggtg      1080
     gcattaaaga agcaaaatgc gatgatcatt ggagaaaaag aggagcgagt gttggcaatt      1140
     caaaatggcg cgcgccgtag ccatcatggg tttcgcggca aaggattgcg ctcgcgtccc      1200
     atacatcgtg atgaccggtc gggaaaacca agtaaccctt gttggttctg tggagctttg      1260
     cattgggtga aggattgtcc gcatactaac cataagtgtc gtgaatgcgg tgaagttggt      1320
     catctggagg aacgctgccg caagcagaag catcgggctg gccgaaagtt ttatcgccca      1380
     acgcgatttg ctaaaaccgt cacggtgtgc agcgtacggg ctagtcgcaa gtttgtggaa      1440
     gtttccatca atggagttgg catccggttg cagctagata cgggttcaga tatatcggtc      1500
     ataggtcgtt cagcgtggga gaaagtaggg aagccgtcat tggtgcagcc taccgtttgc      1560
     gcaaagactg cctctaatga gaggctggag ctacttggcg agtttagagc agaggttgcc      1620
     atttgtaatg ctaccaagcc ggcgatcatc cgtgtggctc aagtcgattt attgttactg      1680
     ggagcagact tgattgacct ttttgctctt agctccgttc caatggatgt gttttgcgcc      1740
     aaagtttcga cgaccgcaca gattcccaag gaattgcaga gccgttttcc ggaagttttt      1800
     cgtggcacag ggctttgcac gaaagcgcag atcaagctgc agcttaagga taattgccgt      1860
     ccggtgttcc gcccgaagcg accggttgca tacgcaatgc aggctacagt agaggaagag      1920
     ctcgatcgcc tggtccagat gaatgtgatc acacctgttg attactcgga atgggcgaca      1980
     ccaatagtcg tcgtacgcaa aagcagtgga gctattcgaa tctgcggcga ttattcgacg      2040
     gggttgaacg atgcgttgcg tccgcatgaa tatccgttac cgctccccga tgatattttt      2100
     gcaagattgg cccattgcaa attttttagc aaagtggatt tgtcagacgc atttttgcaa      2160
     gttgagattg aagagcgtta caggcccctt ttaacgatca acacgcatcg aggtctttac      2220
     ctttacaatc gtctgcctcc tggattaaag gttgcgccag ccgcgttcca gcagataatg      2280
     gatgcgatgc tcgccggatt gtgttacact tctggctatc tggacgacgt tgttgtcggg      2340
     ggaagaactg aagaagagca cgatgaaaat ctcaacaagg tgcttcagcg tattaaagaa      2400
     tttgggttta ctatcaaagc tgagaagtgt gcttttaaga cgcatcagat agagtacctc      2460
     gggcacataa ttgatcgtac tggccttaga ccgaatccaa agaaaattka tgctattgta      2520
     aacctaccag ctccatcaaa tgtgaatgaa gtccgctcgt ttttgggtgc cattaattac      2580
     tacggaaaat ttgtgcctaa catgcggaat ttgagatacc ccctggataa cttgttgaaa      2640
     gatggcaatc agtttgtatg gacgaagcag tgcggagagg ccttcagaaa gttcaaggaa      2700
     atattaaagt ctgatctgct tctgacacat tatgacccta cggctgaaat catagtagcc      2760
     gcagacgcct catcggttgg gctcggagcc accattagcc acaagtttcc ggatggatca      2820
     ataaaggtgg tgcagcacgc gtcacgggct ctaacgaaag cagaagaggg gtacagccag      2880
     attgaccgcg aaggactggc tatcatcttt gcagtaaccc gattccacaa gatgctttat      2940
     ggcaggcatt tccgcctcca aaccgaccac aagccattgc tgcgcatctt tggatcaaaa      3000
     aagggaattc ctgtgtatac tgccaaccgg ctgcagcggt tcgctctagc gctgcagcta      3060
     tacgacttcg aaatcgagta catacccacg gataaattcg gcaatgcaga cctgctgtcg      3120
     cggctcatca gcaagcacgc gaaaccggag caggagtaca tgatcgcgaa gaagttgcag      3180
     cagctacgaa aaaggaccct ctactgcgcg aagtgtaccg ctacgtccaa tcgggttggc      3240
     caggcaaggt cagttatggt gcggaattgg cccaattcca caacagaagg gaagcactga      3300
     cgaccgttgg cgactgtatc ctcttcggag agaggattgt gattcccgca gctttgcagc      3360
     agagatgcct tagacagctt catcaagggc atccgggcat ccagcgaatg aaggcgattg      3420
     cacgcagttt cgtgtattgg ccatcattgg acagcgacat cgccgatcga gttgcttcat      3480
     gcgaagcatg ccaggctgcg gcgaaatcac caccatccca gataccatca tgttggccga      3540
     agccacctgg gccttggcac cgcgtacaca tcgattacgc tggacctgtg gagggagcct      3600
     atttcctgat tgcggtagat gcctactcca agtggccgga aatcattaaa actgcaagta      3660
     ttacctcatt cgctacaata tctattttgc gaggaatatt tgccagattt ggaccgccag      3720
     ttacattggt cagcgacaac ggtacccagt tctccagcga ggccttcaag gagttctgtg      3780
     agtgtaacgg catcgaccat gttcgcacac cgccttttca tccacagtcc aacggccagg      3840
     cagagcgatt tgtggatacc ttcaagcgat cactgaagaa aatacgggcg aggaacgtgt      3900
     cccttgaaga ggccctggac ttgtttcttc tcacgtatcg ctcaacacca aatcctgctt      3960
     tggaccagcg cacaccagcc gaagtgatgt ttggaagaac gaccaggaca attcatcatc      4020
     tattgcgccc tcctgcagca tcggagtcta cagcgaagga tgactttcgt gaataccagc      4080
     ctggtgattt agtgtatgcc aaggtgtatc gggcaaactc ttggaattgg atagcaggga      4140
     ggattgctcg cagaattggc aacgtcatgt acgaggttgt gtcgcacgac cagagaagac      4200
     ttcggcgtca tgtgaatcag ctccgccgcc gtgtcgctag ctcatcagaa cggaacgaga      4260
     tggatcagca ccaatttccc cttagtttac ttttagatga gatgagtttg acgtctcgtc      4320
     agcagtcgcc gtccgcttcg ctgccaacgg agccagcctc atcttcagca gcaccggcgc      4380
     tgacaggggt tcagcgagca ccggcatcat cgccagcatc atccgtgcaa ccggaggtac      4440
     aacgagcggc ttcgtctagt ggcagcagca acacccagca gacacagcta ccacgacgat      4500
     cttctaggac tagaagactg cctcgtaggt tcagcgcgta tcggctgaat taaaaggggg      4560
     agg                                                                    4563
//
ID   Gypsy-1_AnSt-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-316
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 775-775 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 316 BP; 72 A; 76 C; 84 G; 84 T; 0 other;
     tgttgagtgt atactcgacc aagcagcgga ggcccggacc gtaacgccgt tactcggtcc        60
     tgtcaacgga tgacagcgat cgacgtgcca tgcggttcat ccttcgtgtt cgggcttcgg       120
     gaccgatcgg cctctttctt gatccagccg ctgccgagac aggacgcgtt agacgagcga       180
     agttttagcg tgtgtgtgtg tgtgcgtgtg taataagtgt aataagtgta atgtaataaa       240
     taagttttaa tttgttgtaa accgcaatcg tccgcgtacc ggcatcattg tctcccccga       300
     tatcaccaac ataaaa                                                       316
//
ID   Gypsy-1_BM-I repbase;    DNA;    INV; 1933 BP.
XX
AC   nscaf1299;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_BM_;
KW   Gypsy-1_BM-LTR; Gypsy-1_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1933
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 977-977 (2010).
XX
DR   Genome; nscaf1299; Positions  206879  204947.
XX
CC   Positions [987-1628] - Reverse transcriptase
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           249..1931
FT                 /product="Gypsy-1_BM-I_1p"
FT                 /translation="MISPDVIAGTSLEHCIEREPFTVKTAHATTRHEHVAI
FT                 LPLPYLFNTDIHHKFLLFDFDPKYKGLIGMDLFKKLGCNIDFKNKVLRTFN
FT                 TEIPIYFDYPVKQVKIEPNCERFITVKTNYTDGYYICDDFTWSKGLKSPAA
FT                 IVTVKNGTFRTSIINYNDTQQIVSNNRMLALSPLPSHLIENSQKYEINKIE
FT                 TETDIDKELCENLKKIRTSHMNEEEKREITKICYQYRDIFYSENIPLSFTH
FT                 TVKHELRLTDDTPIFVRSYRQAPQQRTEIQKQVDSLLKQGIIRESISPWSC
FT                 PVHIVPKKPDASGKVKWRLVIDYRRLNDRIIEDKYPLPNINDILDRLGRAQ
FT                 YFTTIDLASGYHQLEMHPKDVEKTAFTTERGHYEFLRMPFGLKNAPSTFQR
FT                 LMDHILRGIDNVFMYLDDVIIAATSLQNHNEKLKLVFQRFKMHNLKVQLDK
FT                 SEFLQKHVNFLGHELTDQGLNPNKDKIKAVLNFPIPQTQKDIKAFLGLVGY
FT                 YRKFIKDFAKLTKPLTACLKKNAKVEHTNEFLDAVDKCKQILTNAPILQYP
FT                 DFDKPFILTTDASD"
XX
SQ   Sequence 1933 BP; 707 A; 401 C; 340 G; 475 T; 10 other;
     gagatagaaa ctaatgnnnn nnnnnnacta taaccataac atgcaataca gcgaccaaaa        60
     ctacgagtat atgccagata tgtcgggaga agaatcaaat caacaggatt tcttcaggac       120
     gaggaccaat cgaacctcag ctgataaaga ctgttaacct caaccaccac ggcaaagacc       180
     acctccctta catcgaatta ccggagtttc aaggtaaatt tttattagat actggtgcct       240
     cacgttgtat gatatcaccg gatgtaatag ccggtactag tctcgaacat tgcatcgaac       300
     gtgagccatt tacggtaaaa accgcgcatg ctactactcg tcacgagcac gtcgcaattt       360
     tacctttacc ttacctgttc aacaccgata tacaccacaa atttttattg tttgattttg       420
     acccaaaata taagggcctt attgggatgg acttgtttaa aaaattaggc tgtaatatag       480
     atttcaaaaa caaagtgttg cgaacattta ataccgaaat accaatctat ttcgactatc       540
     cggtaaagca agttaaaata gaaccgaact gcgagaggtt tataacggtt aaaacaaatt       600
     acaccgacgg ttattatatt tgtgacgatt tcacttggtc taaaggatta aagtcaccag       660
     ccgcgatagt gacagtaaaa aacgggactt tcaggacatc tataatcaat tataatgata       720
     cacagcaaat agtgagtaac aatcgtatgt tagccctaag cccactaccg tcacatttga       780
     tagaaaacag tcagaagtac gaaattaaca aaattgagac ggaaactgac atagataaag       840
     aactttgtga aaatttaaag aaaattcgta ccagccacat gaacgaggaa gaaaaacggg       900
     aaattactaa aatctgctat cagtaccgtg acatattcta ctcggaaaac attcctttat       960
     cgtttaccca tacagtaaaa cacgaattaa gactaaccga cgacaccccc atctttgtac      1020
     gaagttatag acaggctccc caacaacgaa cagagataca gaaacaggta gatagtctgt      1080
     taaaacaagg aatcattagg gaaagtatct ccccttggtc gtgcccggta cacattgttc      1140
     cgaaaaaacc ggatgcatca ggaaaagtta aatggagact tgttattgac tatagaagac      1200
     ttaatgacag aattatagaa gacaagtacc ccttaccaaa cattaacgac atccttgaca      1260
     gattagggcg cgcacaatat ttcacgacca tagatttagc aagcggctac catcaattag      1320
     aaatgcaccc taaagacgta gagaaaacag cgtttactac tgaaagaggc cactatgagt      1380
     tcctaagaat gcctttcgga ctaaaaaatg ccccgagcac tttccagcgt cttatggacc      1440
     atatactccg aggtatagac aacgtattta tgtacttaga tgacgtcata atagccgcga      1500
     cgtccctaca aaaccacaat gaaaaactga aattagtatt tcagcgattc aaaatgcata      1560
     atttgaaagt tcagttagac aaatcagaat ttctacagaa gcacgttaac tttctaggac      1620
     atgaattgac tgaccaagga ctaaatccta acaaggacaa aattaaagca gtattaaatt      1680
     tccctatacc acaaacgcaa aaagacataa aagctttctt aggcctagtc gggtactata      1740
     ggaagtttat taaggacttt gcgaagttga cgaaaccttt aacagcatgt ctaaaaaaga      1800
     acgcaaaggt tgaacataca aacgaatttt tagacgcagt tgataaatgc aaacaaattc      1860
     taacaaacgc cccaatcctg caataccctg acttcgacaa accgtttatt ttaacgacag      1920
     acgcatctga ctt                                                         1933
//
ID   Gypsy-1_BM-LTR repbase;    DNA;    INV; 433 BP.
XX
AC   nscaf1299;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_BM_;
KW   Gypsy-1_BM-I; Gypsy-1_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-433
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 978-978 (2010).
XX
DR   Genome; nscaf1299; Positions  204946  204514.
XX
SQ   Sequence 433 BP; 157 A; 79 C; 82 G; 115 T; 0 other;
     tgctttagga gcagtacttt cccaaggcaa tgtgggctca gataaaccag tagcctatgc        60
     ctcaaggaca ttatcagata ctgagatccg ttactctacc atagagaaag aactgttagg       120
     gatagtatgg gcaattaagt attttagacc ttacttatat ggccgtaaat ttacaattta       180
     tacggaccat agacccctta catggttaat gagtctaaag gaccctaact ctaaattaac       240
     acgatggaaa ctaaagttgg cagagtatga ttacaaagtt gtttataaaa agggcaaaca       300
     aaacactaac gcagatgcac tatcccgagc aaaaattttt cataatagta tagattctct       360
     agctgttaat gttgatgaca atagtgacga caacataata aatagaatat tcgaaaacgc       420
     ccgtagacag gca                                                          433
//
ID   Gypsy-1_BrCo-I repbase;    DNA;    INV; 5207 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_BrCo-LTR; Gypsy-1_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-5207
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1401-1401 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1078..1998
FT                 /product="Gypsy-1_BrCo-I_1p"
FT                 /translation="MVDEKELQGENGPEPQPDQGLKTPTDINALIVKLPTF
FT                 WASNPRTWFIQAEAQFSLGKITSDVSKYNYVVATLPQDIAESVSDILENPP
FT                 ASDLYKNLKDELIGRHSLSLESRIRKLTSDEEIGDKKPSEFFRTLKRLAGN
FT                 CGTVGDELLKKLWMGRLPQAISVALIPQKDDEIGNLMKLADQVWEAIKTAN
FT                 ISAVSNHPAGPSSIYDELKSEINSLKMMIEKISFDRSRNRNRSRSRNCSNE
FT                 SSNNHTRSNSNYRRNRSRSSRFNPNGRFCFDHFKFGKRATKCTKPCAFVDK
FT                 SQDTSVSRDRASNPN"
FT   CDS           1992..5078
FT                 /product="Gypsy-1_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="PKLKSPAVDAATSGMLFKSCRLFVRDNKNKLLFLIDT
FT                 GADVSVIPKSFVKFFKLNKDFQLTAANGSVINTYGSKVVEVELGLRRNYPH
FT                 EFILADVNKPIIGADFLAKHGLLPDLRNKKLVDPATSLVINAMRADNCYEP
FT                 TPRLYSIATEFGEILKKYPSLVAPPNFNLPVKHNVVHHIHTKGPLPYSKAR
FT                 RLSPDKFKVAQVEFNYMNEVGICRPSSSQAASALTMPPKPRSPDFRPCGDY
FT                 RRLNAITIPDRYPLPHIQDFNAKVAGSKIFSKIDLVRSFHNIPVAPEDVHK
FT                 TAIITPFGLFEFPRMPFGLRNAAQTFQRFMNEVCKGLDFVFVYIDDILIFS
FT                 KSPEEHKAHLDTLFERLAEYGLCIKPSKCVLGVKALEFLGHYVDENGILPS
FT                 AERVEAITSFPAPDSLKKAQRFVGMINYYFRFVPKLAEILIPLHSHIAEME
FT                 GMKKKNRNRKLEFHWPDSCNDAFNQAKEALANATMLVHPKKKGLIISLFTD
FT                 ASGKAVGSVLQQYHKGIWQPLGFFSKKLSSAEVKYSTLDRELLAIYLSVKH
FT                 FRYFLEGREFIVYTDHKPLTTAMTSTAERSPRQCRHLEFISQFTTNIQHVK
FT                 GKNNVVADFLSRIDEPEVASLKTSLELKALIELQKGDDEIQELLEKQDDKS
FT                 KYCLKEVDLPLSLGKLWCDVSTGQNRPFVPEPLRRAIFDQFHSLSHPGIRG
FT                 TRKLVTSRYFWPCVNKDVNHWTRSCIPCQRAKVVRHVKSPLGKFKAPSSRF
FT                 EHIHIDLVGPLPCSNGFTSVLTVVDRFTRWPEAYPIHDQTAETTARCLVSQ
FT                 YISRFGVPLEITTDRGKQFESQLFAELCKLLGSDRIRTTSYHPQANGMVER
FT                 FHRNFKDSIIARCNTVHWTDELPLVLLGIRATVKEGLGCSPAELVYGQTLK
FT                 IPGEFFVDTPLTDPLDHSNFVDRLRKHMRAVKPVEPAVSRQAQESVPKALS
FT                 TCSHVFVRIDRVKPSLHPRYDGPFKVIKRLRKGYVLHVNGKNDTVSIDRLK
FT                 PAFGILSVASDNKVLKKKSVSFR"
XX
SQ   Sequence 5207 BP; 1506 A; 992 C; 1189 G; 1520 T; 0 other;
     ttggtgaccc cgacgaacac agaaagttaa attaaattca ttgagtgaaa ttgatattga        60
     aaaagtgaaa caaaagtaat tttttgctga cgccgaccgg agacattttc atttgcaatt       120
     tggccgttaa cttcaataaa acgtgaactt tggctgatcg aacgctgcgt tcatcatttg       180
     gccgttagtt ttggcagaaa ggattatcca ttctgattta aagctaacgt gagctaaatc       240
     ctggttgatc gcgaaataaa atcatcgttt ggagctatca cgagagaaaa caacgtggtc       300
     gaggtcattc agagcaaagt ggatgtgaca agacatagta tttggctggc cgtcgatttt       360
     aagcattgtg gcgtgtgcta gcggaacatt atcacgtccg taaaactggt ctgcaagaag       420
     gacgaaattc attggtacaa aaaacttcta cggtcaaggt cgttggtagc agaccattgg       480
     aaataccagg ctttgttggt tggaaatctc cacaggtaca aatcctgtgg ggataaaagg       540
     tacgtgactt agtcataaat tcattgccac accgaaatta tatcgtttgc gttgaattgt       600
     cgatcgaaaa atctggatct tggcgcgtaa tctacattgt tcgagaaaat acataattcc       660
     cgttggtttt ggcgcgtcga ttcctttgtt cggtatccac actggtattc aacaatcaac       720
     agttactcaa cgtacccaag acaatcaact gataaaatca tttcatcaga ttgttctcat       780
     ttcatttgca ttatataacg aaacccatca atttctaaac tagctcaagg ttaggcagcg       840
     tttcggaatt tagcttttgt ttgatcatca tttaacgtag aacattttgc tttcattttc       900
     gagatcattt aattgatttt tcttggaatt ttaatttgag aatattccga aacgactgaa       960
     agtttccagt cgagtttttc atgtttgagt tgatcattag tcttgttgaa cggactgggt      1020
     gagtgcgatt tattttttcg attaattttt cgacacttcg cggtgtaatt attaaatatg      1080
     gttgacgaaa aggagttaca aggtgaaaat ggtccagaac cacagcctga tcaagggtta      1140
     aaaactccaa ccgacattaa cgctcttata gtgaaattgc caacgttttg ggcaagtaat      1200
     ccgcgtactt ggtttataca ggcagaagca caattctcgt taggtaaaat cacatctgat      1260
     gttagtaagt acaattacgt cgtagctacg ttgcctcaag acatagccga atcggtatcg      1320
     gatattttag agaatccccc agcgagcgat ttgtataaga atttgaaaga cgagcttatt      1380
     ggtcgtcatt cattgagttt ggaaagccgg ataaggaagt taacatccga tgaagagatc      1440
     ggcgataaaa agccgtctga gttttttagg acccttaagc gtttagcagg caactgcggt      1500
     acggttggtg atgagttgtt gaaaaagctg tggatgggta gacttcctca ggcgatcagt      1560
     gtagctctta ttcctcaaaa ggacgatgag attggtaact tgatgaaatt ggctgaccaa      1620
     gtgtgggaag caataaaaac agctaacatc tctgctgtga gtaatcatcc ggccggtcca      1680
     tcttcaatct atgatgagct aaaaagcgaa attaattctc taaaaatgat gatcgaaaag      1740
     atttcgtttg ataggtctcg caataggaac agaagtcgtt ctcgaaattg ctctaatgaa      1800
     agctcgaaca atcacactcg ttcaaacagc aattatcgca gaaatcgttc acgaagttca      1860
     cggttcaacc caaatggtag attctgcttt gatcatttta agttcggaaa gagagcaacg      1920
     aagtgtacta agccttgcgc attcgtggat aaatcccaag acacgagtgt ttcaagagac      1980
     cgagcgagta acccaaacta aagagtcctg ctgtagacgc ggctaccagt gggatgttgt      2040
     ttaaatcttg ccgccttttt gttagggata ataagaataa attgctgttt ttaattgata      2100
     ccggagctga cgtaagtgtc attccgaaaa gttttgttaa gtttttcaaa ttaaacaaag      2160
     attttcagct aacggctgcg aacggttcgg tgattaatac gtacggaagc aaagtagttg      2220
     aagttgagtt aggtttaagg aggaattatc ctcacgagtt tatcctagct gatgtgaaca      2280
     aaccgataat aggagcagat tttctagcta agcacggtct tctaccggac ttgaggaaca      2340
     agaaattggt cgatccagca acctctttgg taataaacgc gatgagggct gataattgct      2400
     atgagccaac tcctaggttg tattcaattg ccacagaatt cggcgaaatt ctcaagaagt      2460
     atccgtcatt agttgctccg cctaatttca atctgccagt caagcacaat gttgtccacc      2520
     atatacacac gaaaggtccg ttgccgtatt ccaaggcacg caggctaagc cccgataagt      2580
     ttaaagtggc tcaagtcgaa ttcaactata tgaatgaagt tggaatttgt cgaccttcgt      2640
     cgtcacaagc agcttcggca ttaactatgc cgcctaaacc tcgaagtccg gacttccgtc      2700
     catgtggtga ctatcgaagg ttaaatgcta taacgattcc ggacaggtat cctctgccac      2760
     acattcaaga tttcaatgct aaagtggcag ggagtaagat tttttccaaa attgatttag      2820
     tgagatcttt tcacaatatt ccagtggcac cagaggatgt gcataagact gccataatca      2880
     ctcctttcgg attgtttgaa ttccctagga tgccatttgg actgcgtaac gcagcccaga      2940
     ctttccagag atttatgaat gaagtttgca aaggactaga ctttgtgttc gtttatattg      3000
     acgacatttt gattttcagt aaatcgcccg aagagcataa agctcatttg gacacacttt      3060
     tcgaacgttt ggccgaatac ggcttgtgta ttaagccttc caaatgtgta cttggtgtga      3120
     aagcactcga atttcttggt cattatgttg acgaaaatgg cattttgcct tcggcagaaa      3180
     gagtggaagc gattactagt ttcccggcgc ccgattctct taagaaagcc caacgtttcg      3240
     ttggaatgat taattattac ttcagatttg tgccaaaatt ggctgaaatt ttgattccac      3300
     tgcattctca tatagcagaa atggaaggaa tgaagaaaaa gaatcggaat cggaaattag      3360
     agttccattg gcctgatagt tgtaatgacg cgtttaatca agccaaagaa gctttagcca      3420
     atgcgacgat gctagtgcac ccgaagaaga aagggttaat tatcagtttg ttcacagacg      3480
     cttcgggtaa agctgtaggg tcagtcttgc agcagtatca caaaggtatc tggcaaccgt      3540
     taggtttttt ctcaaaaaag cttagttcgg cggaagtgaa atatagtact ctagaccgtg      3600
     agcttttggc gatatattta tcggttaagc acttccgcta ttttttagaa gggagagagt      3660
     ttatcgttta caccgatcat aagccactga ccacggctat gacatcgacg gctgaacgca      3720
     gtccgcgaca gtgtcgccat ttagaattca tttctcagtt cacaacgaat attcaacacg      3780
     tcaaaggaaa gaacaatgtt gtcgctgatt ttttgtcacg gatcgatgaa ccggaagtag      3840
     cttcgttgaa aaccagttta gaattgaaag cactaatcga gcttcagaaa ggcgacgacg      3900
     agatccaaga gttattagaa aagcaagacg ataagtctaa atattgctta aaagaagttg      3960
     atttgccact ttccctaggc aagttatggt gcgacgttag cacgggccaa aatcgtccgt      4020
     ttgtaccaga accgcttagg agagctatct ttgatcagtt tcattcacta tcgcaccctg      4080
     gaattcgggg aacgcgaaaa ttagttacat cacggtattt ttggccatgt gtcaacaagg      4140
     acgtaaacca ctggaccagg tcgtgtattc cttgccagcg ggctaaagtc gtgagacatg      4200
     tgaaatcgcc gctaggaaaa ttcaaggctc cttctagtag gtttgagcac attcatattg      4260
     accttgttgg tccgctaccc tgttctaacg gtttcacgag cgttctgact gtcgtagaca      4320
     ggtttactcg ctggccagaa gcttatccta tacatgatca gactgccgaa acgacagcta      4380
     ggtgcctagt tagccagtat atttcgcggt ttggcgtgcc attagaaatc acgactgaca      4440
     gaggaaagca gttcgagtcg cagttgtttg ccgaattgtg taagttgtta ggctcagaca      4500
     ggatccgtac aacatcgtat catccgcaag ccaatggcat ggtagagcgt tttcatagaa      4560
     attttaaaga ttcgataatc gctagatgta atactgttca ttggaccgac gagttgcctc      4620
     tagtcttgct gggaataaga gctacagtga aagaaggctt aggatgctca ccagctgagt      4680
     tagtatatgg gcaaactttg aagattccgg gagaattttt cgtcgataca ccgctgaccg      4740
     atccgctcga tcattctaat tttgttgata ggttgcgaaa acatatgcgt gctgtaaagc      4800
     cagttgagcc tgcggtttcc cgacaagctc aagagagcgt tcccaaggcg ttaagtacgt      4860
     gcagtcacgt tttcgttaga attgacaggg taaagcctag tctgcatccc cgttacgacg      4920
     gaccatttaa agttattaaa cgtttgagga agggttacgt tttgcacgtt aacgggaaga      4980
     acgatacggt gtcgatagat cgtttaaagc cagcgtttgg gattctgtcg gtggcatcgg      5040
     ataataaagt ccttaagaag aagtcggtta gttttcgata gttttggtcg ttgtgggctt      5100
     gtgctgatag ctataaacta agtacacgtt cagacgggat gtcctttcgt agtttgtaat      5160
     tttttttttg tttttcttgt tttttttttt gttgaaaagg ggaataa                    5207
//
ID   Gypsy-1_BrCo-LTR repbase;    DNA;    INV; 265 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-265
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1389-1389 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 265 BP; 81 A; 57 C; 49 G; 78 T; 0 other;
     tgtagtggtc gtgaactgag tcactacccc tacgtaacaa gtgtcgaaat gtcaaataac        60
     atcgcattct cttagtacga actctctcgt tatattcggt taaccgaccg taatataact       120
     agagcgtatg agttacgacg aagatcttta ttcactcgac caccatagcg tcagcatcat       180
     ttaaacgagc tcaataaatt gtaattagta agtcgaacag tggcctttca ttttacgtat       240
     tagataggag tccgagactt ctaca                                             265
//
ID   Gypsy-1_BT-I repbase;    DNA;    INV; 4520 BP.
XX
AC   AELG01002157;
XX
DT   15-JAN-2011 (Rel. 16.02, Created)
DT   15-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the buff-tailed bumblebee: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_BT_;
KW   Gypsy-1_BT-LTR; Gypsy-1_BT-I.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-4520
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the buff-tailed bumblebee.";
RL   Direct Submission to RU (15-JAN-2011).
XX
DR   Genome; AELG01002157; Positions    1050    5569.
XX
CC   Positions [3141-3416] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..2754
FT                 /product="Gypsy-1_BT-I_1p"
FT                 /translation="MQQHMTITHDVVQTLVRKPSVESENLSLPLFNPEIAG
FT                 ADPFAWCTTASVLMDNEPQSRELYFAISRALKGTAAQWLTRVPVRGLTWEK
FT                 FTEDFLSHYGGKETATSALMRMINEPPQKDEPTATFGNRLRSFLSARWEGL
FT                 SIAEAINAAVLLRQTSYDQRVERIALAHDIRARDQFHQEMRALPHARKRSV
FT                 SLSNDPSAKPEAELNKTSNSRTRCYHCGAVGHKATECRKRMRIEKQKKTQR
FT                 PEESRPATSSKVFCFKCRAEGHIVPDCPLRQERKGGHIKERRVDCRVVEAP
FT                 TGKLSHQGESFPFCFDSGTECSLIKESAASKFSGKRTTDIVVMRGIGNTCV
FT                 KSTSQILSTVCINGFTLEIAFHVLPDSYLKYDIMIGREILSQVFDVHITRI
FT                 GLDICKRKIVNACNKAAENEIDLNEVDTEVLGDDKGRLISILEKFKNSFIT
FT                 GFPRTRVNTGQLEIRLIDPNVTVQRSPYRLSEEERRTVRDRISELIRAKII
FT                 RPSSSPFASPMLLVKKKDGSDRLCVDFRALNKNTVADRYPLPLITDEIARL
FT                 QKARYFISLDMASRFHQIPIHPNSTEYTAFVTPDGQYEYVTMPFGLKNALS
FT                 VFQRAIFNALSDLEYSYVVVYLDEVLIIADSIDQALERLNTVLDALVKAGF
FT                 SFNFAKCSFLKTSVLYLGYVIHNGEVRPNPGKIHALSSLPAPTTVTQLRQF
FT                 IGLASYFRKFVPKYSQMMKPLYALTSGNRNMTWTDRHEKIRQQVVSILTDA
FT                 PVLMIFDPNYPIELHTDASSEGYGAILMHKVEDKNRVIEYYSKRTTPAESR
FT                 YHSYELETLAVVNAVKHFRHYLHGREFLVVTDCNSLKALSNKLHLNDRAQR
FT                 WWVYLQTFTFDIMYREGKRMAHVDFFSRNFVDLDHRKIDKIAEKEINLAEI
FT                 SED"
XX
SQ   Sequence 4520 BP; 1368 A; 1002 C; 1061 G; 1089 T; 0 other;
     tcagaagtgg gattcgagtc tttgttaaca acgatgcaac agcatatgac catcacgcat        60
     gacgtagttc agacgctagt gcgaaaaccg agtgtggaat ccgaaaattt gtcgctaccg       120
     ctttttaacc ccgaaatagc gggcgccgac ccatttgcgt ggtgcacgac agctagtgtg       180
     cttatggaca acgagcccca aagccgcgag ttatatttcg ccataagtcg tgctctgaag       240
     ggtaccgcag cacagtggct tacacgagtc ccggttcgtg gccttacttg ggaaaaattt       300
     acggaagatt ttctctcgca ttatggtggc aaggagacgg caacctcagc gctgatgagg       360
     atgatcaatg aaccacccca gaaggacgaa cccacggcaa ctttcggcaa tcgtcttcgc       420
     tccttcctgt cggcgagatg ggaaggtcta tccatcgccg aagcaattaa cgctgccgtc       480
     cttcttcgac agacttcata tgaccagcgt gttgaacgga tagcactcgc gcatgacatc       540
     cgggcacggg atcaatttca tcaggaaatg agagctcttc ctcacgcgag gaagaggtcg       600
     gtatccttgt caaatgaccc atcggcgaaa cctgaagctg aactgaacaa gacatcaaac       660
     tcccggacaa ggtgttacca ctgtggagcc gtcgggcata aggcgacgga gtgccgcaag       720
     aggatgcgga tcgaaaagca gaagaagaca caacgcccgg aagagagccg accagccaca       780
     tcgtccaagg tgttttgctt caagtgccgt gcggagggcc atatcgtacc tgattgtccg       840
     ttacggcagg agagaaaagg cggtcacatc aaggaacgtc gagtcgactg ccgcgtggtg       900
     gaggccccaa ccggtaaatt aagtcaccag ggtgagtcgt tcccattttg cttcgattct       960
     ggaaccgaat gctcattaat taaggaatcc gcagcctcga aattttccgg caaaagaacg      1020
     accgatatag tagtaatgcg agggatagga aatacatgtg ttaagagtac gtctcagatt      1080
     ttgtccactg tatgtatcaa cggttttacg ttggagatag cttttcacgt cctccctgat      1140
     agttatttaa aatacgatat catgattggt cgcgaaattc taagccaagt cttcgacgta      1200
     catatcacgc gcattggcct cgatatttgc aaacggaaga tagtcaatgc ctgtaataag      1260
     gccgccgaaa atgagatcga tcttaatgaa gtagacaccg aggtacttgg cgacgataaa      1320
     ggtcgattga tttctattct cgaaaagttc aaaaattcat ttattacggg cttcccacgt      1380
     acccgcgtaa acacaggcca gttagaaata cggctaatcg accctaacgt caccgttcaa      1440
     agaagccctt atagacttag cgaggaagag cggagaaccg tgcgagatag aatcagcgaa      1500
     ctaattagag caaaaatcat aaggcctagt agttcaccat tcgcgagccc tatgttgctc      1560
     gtgaagaaaa aggacggctc cgatagactg tgcgtagatt ttcgagcgct aaataaaaat      1620
     acggtcgcgg atcggtatcc tctacccctt atcacggatg aaatcgcgag attgcagaag      1680
     gcgagatact ttattagcct ggatatggcc agcaggttcc atcaaattcc catacatccc      1740
     aattcgacag agtatacagc gttcgttaca cccgacggac aatatgagta tgtaacgatg      1800
     ccgttcggat tgaaaaacgc actgtccgtt ttccagaggg ccatttttaa cgccttaagc      1860
     gacctcgagt attcatacgt cgttgtttat ttagatgaag tcctaattat tgccgattcg      1920
     atagatcaag ctttagaaag attgaacacc gtgttagatg cccttgtgaa agccggattt      1980
     tccttcaatt tcgcgaaatg ttcttttctg aagacatcgg tactctattt ggggtatgta      2040
     atccataacg gagaagttcg tcccaacccg ggtaaaatac acgccttaag ttccttacct      2100
     gcgccaacaa ccgtcacaca gctcaggcag ttcatcgggt tagcttcgta cttccgtaag      2160
     ttcgtcccta aatactcaca gatgatgaaa cccctgtatg cgctcacctc aggtaacaga      2220
     aatatgacgt ggacagacag gcacgagaaa ataagacaac aggtagtttc tatcctgacc      2280
     gacgcgccgg tgctaatgat attcgatccc aattacccga tagaactaca cactgacgct      2340
     agctcggagg gttacggggc gattttgatg cataaagtcg aagataaaaa tagagtaata      2400
     gagtactaca gtaaaagaac tacccccgcg gaatctagat atcactccta cgaactagag      2460
     acgttggcag tcgtaaacgc cgtcaagcat ttccgtcatt acttacatgg acgggaattt      2520
     cttgtcgtta cggattgcaa ctcgttgaaa gcgttgagta ataaattaca tttaaatgac      2580
     agggcccaaa ggtggtgggt ttacttacag actttcacct ttgacattat gtatcgagaa      2640
     ggtaagagga tggcccacgt agatttcttc tcgcgaaact tcgtagactt agatcaccgt      2700
     aaaattgata aaatcgcgga gaaagaaatc aatctggccg aaatatcgga agactaacta      2760
     ctagccgaac aacgtcgcga cccacaaatt atagaaacca ccaaacgaca acgaaccgca      2820
     aactacgaaa cgacgagttc gcggaagata tcgcgaatac ctatgagttg cgttcaggta      2880
     ccctttaccg caaagtgcag cggaggggca gaaccctctg cttgcccgtt gtcccgagag      2940
     gctttagatg gtccgttatt aaccatgtgc atcagtcaat tatgcacttg ggttgggata      3000
     agacgctcgg gaaactgtac gagtattact ggttcgaaga aatggcgaag tacgttcgca      3060
     aattcgtaga gaactgtcat gcttgtcgag tttcgaaggc aagttcggat aagatacaag      3120
     ccgaactaca tcctatatcc aagaccagca taccgtggca tacagtgcac gtggacataa      3180
     cgggcaagct aagcgacaaa aatgactcca aagaatacgt cattgttttg gtagatgcct      3240
     ttacgaaatt cgtatacctg cgtcataccc gtaagataga ttcccttaac accatcgaag      3300
     cacttaagcc cgctatattg ttaatcggca gtccctgccg gataatagcg gatcaaggaa      3360
     gatgttttgc aggtaaagaa ttccaagagt tctgtgaaag caaacagatt gttcactgaa      3420
     agcaaaaaaa agttcacttg atagcgactc ggtgctagta gagccaatgg acaggtagag      3480
     cgtgttatgg acacattaaa aaatatgttc acaatagtag agacgaccgg gcggccatgg      3540
     caagacgcga tcggggaaat acagttggct ttgaattgca ctaccaaccg cgtgacaaat      3600
     tcgagctcat tagaactact aataggtaga acagcaagac cttatgacct gttgctaccc      3660
     agtaacatcg aagaaaaaga aatcgatatc tccaatgtaa gacgacaggc gataaaagaa      3720
     atagaaacga atgcggtaca cgataaaaat agattcgaca aagctaaagc taaagtgatt      3780
     aggtttaatc tcggcgattt tgtattacgc aaaaatgagg aaagaaacca aaccaaatta      3840
     gatccaaaat ttagaggtcc atttgtaata gcagaagttt tggaaggaga caaggtatat      3900
     cttaaagaca ttagacggta agcgatcgta caagtacagt caggacagat cgaggaaaat      3960
     gccagatggt cgcattcctg ctgagttgga tgtctgtagt gatgacaata atagtgaccg      4020
     cgacgatatg agtactccga tctcggaaga ttagcagcac tatgccaata acacccggca      4080
     gagtgagttc gcttgtgtct cggaacggta atgtgatata gctcagtgag actctgtgag      4140
     gcatttcact tgcgtctcag agcggtaatg tgatttagct cagtgagacg gtggaacgaa      4200
     gctctatgtg ctcatacgat ctagaaaacc gagattcatt tgggtacgaa atcgagaatg      4260
     gtccatcatg ccgttacgat ccgactgata acccacagga tgcaattatc accttgaata      4320
     ctaatcataa cgctaccaat tttcattccc ttttatttct ttgctgtcaa acctccgaac      4380
     agaattttgt tgttacactg gacccttagc ttattcgaac atttagtcaa attgtaaata      4440
     atgttaatcg tatcgagcat attgttagaa aactcaatat tttagtcaca cccgaggacg      4500
     tgtgatagtc agaatggccg                                                  4520
//
ID   Gypsy-1_BT-LTR repbase;    DNA;    INV; 1000 BP.
XX
AC   AELG01002157;
XX
DT   15-JAN-2011 (Rel. 16.02, Created)
DT   15-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the buff-tailed bumblebee: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_BT_;
KW   Gypsy-1_BT-I; Gypsy-1_BT-LTR.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-1000
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the buff-tailed bumblebee.";
RL   Direct Submission to RU (15-JAN-2011).
XX
DR   Genome; AELG01002157; Positions      50    1049.
XX
SQ   Sequence 1000 BP; 295 A; 243 C; 191 G; 271 T; 0 other;
     tgtcggagat gaaagaacac cggaaccttc tctttggaac tttgggaaga tccctcaata        60
     ctgtaatcca gattccacca tagaagtatt gagaaatagt tgtcattcga tctgactgaa       120
     tttatttgag atttatgata gtgagctcgg gctccaggcg acaaccagtc gccaaacgta       180
     gccgcggtca agggataaac gttttgtcta agaaaggcag gaagtaactc tatagctctc       240
     cttaaaagaa atagttggga cggtgcatga cagtaaacat ttcaatggtt tctaccccgc       300
     ggttcgctac acgcagactt tgtccttcgg gtaagatgat tgccagatgt caacgcatct       360
     tcacagtata tgtttagctg gccgaggacc cgttataaat cttaagtttg ggttatataa       420
     agtccttcaa acagacaaat agtctttgtc ccaactacgg gaagataaaa gaaatctatc       480
     cttccatgaa cgacgcttcc cactagcaac tttccccaag gacggctaac atccttctct       540
     aaccaccaac atgaaaattg accaattaac agtaacgtca atttccctca cccttcgaac       600
     gaagactttc ctctgcgaat ccgatgatct catgccctta gacacaccca gcatagattt       660
     cctcgacagc gtcaccgtga cggagagcca ctctcttgta caatctcatc aacgattgaa       720
     ctgtcatttt tatacgtagt gattgctcct tgcattaaca ttgagtataa cttagacgct       780
     aaaaaagggt aaagttcggc atcccgttga ccgcggattc gttatcgaac gtgagaccac       840
     tgtcattagt gccgcgagta tctaaatact gtgataacta ccgacgctat atatctctac       900
     ttgtgttaat aaattgtacc tttgttgcac cgcaccgatg gctaattcca atgaagattc       960
     attgaacacc cctaatccta atcataacgc caacccgaca                            1000
//
ID   Gypsy-1_BTa-I repbase;    DNA;    INV; 5398 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5398
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 615-615 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           693..4742
FT                 /product="Gypsy-1_BTa-I_1p"
FT                 /translation="MAIRKLAEDCGFEKLRDSLIRDRIIIGIHNVQLRERL
FT                 LGEELPLEKVVSLCLSVEAGKKRSNEVNQPKASSVDLVNSGRFQGNPSNQG
FT                 NNFAGRARNNNSGQGRNNNFGQGYNHQSRYNSPNQQQPSRIIDCRSCGLQH
FT                 PVRQCPAYRQQCKKCLGRNHFEKMCRINEVICPENSAPSVHLDEVEASDYV
FT                 YVSEISCIPHNFPKSFSNPPITDYNLSKCGKSSESEASAGRNQKASYQTHH
FT                 ANQSNHVNVNVVSSAETNEFWMQQSLVNNSFIDFKIDTGAEINILPWHLYQ
FT                 KVKTLSDYLVPNTTRVLGYGGAPIETFGNVTLKCQLPNTSVPYTIKFTVTK
FT                 TGSTPLLSLQTSVQLGLIFKKQIDYVSAFTDEAAVLAKFPKQFSGVGEFPD
FT                 VVDLFVSPNAIPSNDPPRRLPHKIRTPLRDKLNALQSLNIISNDVKNVIWF
FT                 SNLVVVEKDDGSIRVCLDPNRLNKHIKRELFLIPSFEEIKLKLTNKKLFTV
FT                 LDIKDGFWHCKLSPESTKYVGFHTPFGSFKFLRLPFGIICAPEIFQKVLTK
FT                 YFGDIPNVIIYFDDILICGETEEEHDRAFAEVMRRAEELNIKFNKSKFQFK
FT                 KTSINYMGHVLNQEGISPNPEYLEAILQLKNPNNRKELQSFLGSVNYVREY
FT                 IPHLADLIQPFRGLLKKNSVFTWQQIHTENFNKIKEAVCAISSLANFNPAK
FT                 KITLQCDASQFGLGACLLQEKRPIAFASRNLSDAECRYAQIEKELLSIVFG
FT                 TKRFHNIVYGYKIYVENDHKPLEPSFQKNISQIMSNRLQRLLLKLLPYDLE
FT                 VKYIPGKNMYLADLLSRNFLNGKPEDFIPLNEVVHCIETNFELSTPKFLEL
FT                 QKATCSDPMLERVKQMHLQDWNSCNDEALKPFYKIRHEIAMNNDIIYFKNR
FT                 LIIPTELKTVYLKLLHGDSHLGISKTIEKAKLIVYWPTYIKDIENYIKACP
FT                 TCSKFLPKNVKEPLISHTIPNLPFHKVGSDIAEFAGKSFLILTDYYSKWLE
FT                 VRPMRNKTSLEVIRLFKEIFKIHGIPALVIADNQPFGSFELSQFAKQFNFK
FT                 IQTSSPKYPQSNGMAENGVKRAKMLLRKVTESKGDLDLAILEYNNSPIPAL
FT                 GASPAQLLMNRVLRTNVPVSQKVLVPQIINVSEKMREHQRKTESHYNQSSK
FT                 PKQEFLENEKIFIREQDDRWYPGRIIKKLEAPRSYLVSKEDGGTIVRNSKF
FT                 LRKNYCNSRTENDVNPYLFYLPQGNTDNEHNINAANQVAPIQTFNLAPPIK
FT                 NPTENSLNSVSSDDSSEITVIEPNVPKEKVTNEETESTDEEDFLGFETEPS
FT                 TSTPKEVININKNSPFNQKLRHGGRGIPKKLGNDFVRK"
XX
SQ   Sequence 5398 BP; 1890 A; 1041 C; 959 G; 1508 T; 0 other;
     tggcgacgag gataacatga cggaaatcag cgaattcacc tgatcagcta agaactgggg        60
     actggccatg cacctgttag gccaccatgc tcactgccgc agatcatcag aagaaaatgg       120
     gtaaatagat tgttttaact catcccccga catgacgctc aagcagaatc cacagctaca       180
     gtgatttcag tgaattttat cctatcgatt tagttcgaat tgtttttaat ttttataatg       240
     tcttagtctc catgcgcttc aaggttatga ctgataacag taccagatga ggcacctatc       300
     attattatag gctaagcaat tattgcattc aagaatctct catactctca attaaaacag       360
     tggaattgcg aactcccgat cccctttctc tcagtggaaa cgtccatgaa aacctgaaac       420
     gtttcaaaaa acagaggtcc aattacagta taggctacga attagacaag aaagatgaga       480
     aagtccaagt cgctatcttt ctcaatatat taggtactga cgcagaagaa attcttaaca       540
     ccctcatcat tactgacgct caaaagaaaa cagtagatgg tcttctaaaa gttctaactg       600
     aatttgccaa gcctaaacta aacatagctt actgtagata cttgttcaat acgagagatc       660
     aacaagaagg ggaatcattc gatcaatttt atatggcaat tagaaaatta gccgaagatt       720
     gtggattcga aaagctgaga gattcactta tcagagaccg aatcatcata ggcatccata       780
     atgttcaact gagagaacgt ctcctcggcg aggaactgcc gctagagaaa gtagtttcct       840
     tgtgcctctc cgtcgaagca ggaaagaaaa ggtcgaatga agtcaatcaa cccaaagcat       900
     caagtgttga tctagtcaat agtggaagat ttcaaggcaa cccctcaaat caaggcaaca       960
     acttcgctgg acgagctcga aacaacaact ctggacaagg acgaaacaac aacttcggac      1020
     aaggatacaa ccatcaaagt aggtacaact cgcccaatca acagcagccg tcaagaatca      1080
     ttgattgtcg ttcctgcggt ctacaacatc ctgtgcgaca gtgtcctgct tatcggcagc      1140
     agtgtaaaaa atgcttgggt cgaaatcatt ttgaaaaaat gtgccgtatt aacgaagtga      1200
     tttgtcctga aaattcagca ccttcagtgc accttgatga agtcgaagct tcagattatg      1260
     tttatgtctc agaaattagt tgcattccac ataattttcc aaagtccttt tcaaatcccc      1320
     ctattactga ttataatctg agcaagtgcg gtaaaagctc tgaaagtgaa gcgagtgcgg      1380
     gtcgcaatca aaaagcaagc tatcaaacgc atcatgctaa tcaatcaaat catgtaaatg      1440
     taaatgtagt ttcttccgct gagacaaatg agttctggat gcaacaatcg ctggttaata      1500
     attctttcat tgatttcaaa atcgacaccg gtgccgaaat aaatatttta ccgtggcatc      1560
     tttatcaaaa agttaagact ttaagtgatt atttagttcc caatacaaca agggttctgg      1620
     gatatggggg agctcctatc gaaacttttg gtaacgtaac cttaaaatgt caattaccca      1680
     atactagtgt tccttataca attaagttca ctgtaaccaa aacaggctct acccctctgt      1740
     taagcctaca aacatcagta caacttggcc taatttttaa aaaacaaata gattatgtgt      1800
     ctgccttcac tgatgaggct gcagttcttg caaaatttcc caaacagttt tccggcgttg      1860
     gagaatttcc agacgtagtt gacttatttg tttcacctaa tgcaatccca tcaaatgatc      1920
     caccgagaag attgccgcat aaaattagaa ctcccctgcg agataaatta aatgcattac      1980
     aatctttgaa cataatctca aatgatgtca agaatgtaat atggttcagt aacctagtcg      2040
     ttgtggaaaa agatgatgga tccatcaggg tgtgcttaga tcctaatcga ttgaataaac      2100
     atattaaaag agaacttttt ctcataccat cctttgaaga aattaaactt aaactcacaa      2160
     acaaaaagtt gttcactgtt ctagatatta aggatggatt ttggcattgt aaattgtctc      2220
     cagaatcaac aaagtacgtt gggtttcaca caccgtttgg aagtttcaaa tttttgagac      2280
     taccgtttgg aataatttgt gccccagaaa tttttcaaaa agtattgacc aaatacttcg      2340
     gtgatattcc gaatgtaatc atctattttg acgatatact aatttgtggt gaaactgaag      2400
     aagagcatga cagagctttt gcagaggtaa tgcgaagagc agaagaactg aatattaagt      2460
     ttaataaatc taaatttcaa tttaaaaaga catctattaa ttacatgggg cacgttctca      2520
     atcaggaagg aattagccca aatccagaat acttggaggc cattttgcaa ttaaaaaatc      2580
     caaataatcg taaggaatta caaagttttt tggggagtgt gaattatgtc cgtgaatata      2640
     ttcctcatct tgcggacctg attcagcctt ttcgaggatt gcttaaaaag aattcagtgt      2700
     tcacatggca acagatacat actgagaact tcaataaaat aaaagaggca gtttgtgcaa      2760
     taagcagtct agctaatttt aacccagcga aaaagataac tctgcaatgt gacgcgtctc      2820
     aatttggtct gggagcttgt ctcttgcaag aaaaaagacc tatagctttt gcgtctcgta      2880
     acttatctga tgcggaatgt cgctacgcac agatcgaaaa agaacttctc agtattgtat      2940
     ttggaaccaa acgctttcat aacattgtat atggttataa aatttatgtt gaaaatgatc      3000
     ataaaccctt agagcctagt tttcagaaaa atatttctca aattatgtca aatcgcctac      3060
     agagactact actcaaactg ctaccgtatg acctagaagt aaaatatatt ccaggaaaaa      3120
     atatgtatct agccgatctg ctctcaagaa actttttaaa tggtaagcca gaggatttta      3180
     tcccattaaa tgaggtggtt cattgtattg agaccaactt tgaattatca accccaaaat      3240
     tcctagaact gcaaaaagct acatgtagtg acccaatgtt agaacgtgtg aagcaaatgc      3300
     atttacaaga ctggaacagt tgtaacgatg aggcccttaa acctttctat aagatcaggc      3360
     atgaaattgc aatgaataac gatattatat attttaaaaa ccgattaatc attccaactg      3420
     aattaaaaac agtttaccta aaattactgc atggagactc gcatttaggg atcagcaaaa      3480
     caatagaaaa ggctaaatta attgtctact ggcctactta tatcaaagac atagaaaatt      3540
     atataaaagc gtgtcccacg tgtagtaaat ttctaccaaa aaatgtaaag gagcctttga      3600
     tttctcacac cattcctaac ttgccgtttc acaaggtagg atctgatata gcagagtttg      3660
     caggaaaatc tttcttaatt ctaactgatt actactcgaa atggcttgag gtgagaccca      3720
     tgagaaataa aacgtcttta gaagtaatca gactttttaa agagattttc aaaattcacg      3780
     gtattccagc gcttgtcatt gcagataacc agccatttgg ttcttttgag ttaagtcaat      3840
     tcgctaaaca gttcaatttc aaaatccaaa catcgagtcc taaataccca caatccaatg      3900
     gcatggcaga aaacggggtg aaaagagcca aaatgctgct aagaaaagtc acagaaagca      3960
     aaggcgactt ggatcttgct attttggaat ataacaattc tcctatccca gctcttggag      4020
     cgtctcctgc tcaactgcta atgaatcgag tcctccgaac aaatgtacca gtgtctcaaa      4080
     aagttttggt ccctcagatc atcaatgtct cagaaaaaat gagggaacat cagagaaaaa      4140
     cagagagtca ctataaccaa agtagtaaac ctaaacaaga gtttctagag aatgaaaaga      4200
     tcttcattag agaacaagat gaccgctggt atccagggag aataattaaa aagttggaag      4260
     ctccaagatc atatctagta tctaaggaag acgggggaac cattgtacga aactcaaaat      4320
     ttctaaggaa aaattattgt aattctagga cagaaaacga tgttaacccc tacttgtttt      4380
     atttaccaca agggaacact gataatgaac ataacataaa tgctgctaat caggttgctc      4440
     caattcaaac tttcaatctg gctcctccga ttaaaaatcc aactgaaaat tcccttaact      4500
     ctgtctcatc agatgactct agtgaaatca ctgtaattga acctaatgtg ccaaaagaaa      4560
     aagtcacaaa tgaggagaca gaaagtacag atgaagaaga ttttttggga tttgagacag      4620
     aaccaagcac ttcaacacct aaggaggtca taaatattaa taagaatagc ccattcaatc      4680
     aaaaattaag acatggtgga cgaggtattc ccaaaaaact cggaaatgac tttgtaagga      4740
     agtgaattaa ttagagtgct acctgatgta ctaatatgaa aaaactgtgt atcaaagcaa      4800
     gtgactactc atttcttcct gtgtatttgc ctcgtgaaca atgttcaatc tatttaattg      4860
     tgatattgat tttaattaat gtataaaatg aaactagtca aatgaaatac caatttaaaa      4920
     gtacctatga ctggggttcc cacccctaac ctttgaattg taattatctc aagtaaatta      4980
     gtggtaacat aagttactca atacgcccaa tagcgacatt aagtgtatct aagccaatgg      5040
     ctacattaat aattcattac gcccaatggc gacattatta gtttctcagc ccaatggcta      5100
     cattaataat tcattacgcc caatggcgac attattagtt tctcagccca atggctacat      5160
     aaataattca ttacgcccaa tggcgacatt atcagtttct aagcccaatg gctacataaa      5220
     taattcatta cgcccaatgg cgacattatt attttctcag cccaatggct acattactaa      5280
     gctccataca gctttatttt gctcagaaag caacatgaat gtggaaatat cccacacata      5340
     atcacgcacc aagtgctttc tttaaaaaaa aaaaaaaaaa aaaaaaaaaa tcgggagg        5398
//
ID   Gypsy-1_BTa-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-190
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 606-606 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 190 BP; 47 A; 55 C; 43 G; 45 T; 0 other;
     tgcagtaagg ctatgtggca tcatagcctt actcaatagg gtgtgtgccc gacctggcaa        60
     cggggcaccc acagacagac aggccactag ccagagccag gcccttcctg ttcaagtcgt       120
     gatctcgcta taataaacat ctttgagtga tcatcagcgt ctcatttatt tcggctaccg       180
     acccacatca                                                              190
//
ID   Gypsy-1_Cfl-I repbase;    DNA;    INV; 4203 BP.
XX
AC   AEAB01004336;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_Cfl_;
KW   Gypsy-1_Cfl-LTR; Gypsy-1_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-4203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01004336; Positions    4533     331.
XX
CC   Positions [3077-3607] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           834..2543
FT                 /product="Gypsy-1_Cfl-I_3p"
FT                 /translation="MLVSSEVPEQRNEVPTPVSVEGGKRGESFVNAALDDD
FT                 SRSRRIFVTDRKTKISFLVDTGADVCVYPRNRLRNTKKCEYELFAANGTPI
FT                 ATYGTTAVDSDFSLRRSFKWRFVIADVSTSIIGVDFLSHYGLLVDPRNKRL
FT                 IDSITSLSTIGHAASAQVVTVKTVFGKSAYHQLLSEYPELTRPPVFRGETI
FT                 KHNVKHYIKTTPGPPVYNKPRRLAPDRFKEVKAEFDLMIEQGIIRPSKSPW
FT                 ASPLHVVPKKDGSLRPCGDYRALNARTIPDRYSPPHIEDFAQRLHGKRIFS
FT                 KVDLVRAYHQIPVAPEDVEKTAITTPFGLFEALNTMFGLRNAAQTCQRFVD
FT                 EITRGLDFVYAFIDDFLIASEDETQHCEHLKVLFKRLSEYGVIINPAKCVF
FT                 GVNEITFLGYTVNEHGIKPLAERVEAIEKFSEPATLKQLRRYLGMINFYRR
FT                 FIPGAARILQPLNELTKGLKKGNAPITWTDRTQNAFVESKRALANATMLAH
FT                 PVPGASISIAVDASDYAMGAALQQLVAHEWQPLGFFTKSLSPSQQKYSAYD
FT                 RELLAMYSAVKLACSTKRALSTL"
FT   CDS           3011..4051
FT                 /product="Gypsy-1_Cfl-I_2p"
FT                 /translation="MNKDCRNWTRQCIPCQRCKVTRHVSAPVNDFGSLAGR
FT                 FEHVHIDLISMPYSQGYKYCLTCIDRFSRWPEVIPIIDMEAATVASAFIST
FT                 WIARFGVPLRITSDQGRQFESDLFRELCRMLGTKHIRTTAYHPEANGMVER
FT                 LHRQLKAAIKCHETENWTEILPIVLLGIRTAIKDDLKATAAEMIYGTGIHL
FT                 PAEFFVPSDQEANSDFVARLRQRVNDIKPSPVTQHGTKRTFVFKELSSSPY
FT                 VFLRHDAARGPLQPPYDGPYEVIERGDQNFVVKIKGKNVRVTIDRLKPAFV
FT                 VSEHIDQRGHEDNIREEIIAAEPQPQPTQNENGRRFTSRAGRSIRFPERFQ
FT                 AGFR"
XX
SQ   Sequence 4203 BP; 1208 A; 1051 C; 997 G; 947 T; 0 other;
     attggacccc gacgtgatcg cttgggtaaa gaggtgaacg tgggaattag tgaaattttc        60
     gcgaagacgg aagtgcgtgt gcacgtgaaa atgtcgctcc cggaaaggaa cgtaaccctt       120
     gacgccagtg ccgaaaacga aacgatcaac attataagcc aaaataattt gcgcatcccg       180
     caattctggc cgcaaaaagt cgctttgtgg tttcgactgt tagaagcgca gttcgcatcc       240
     gcgcgtatca cgaaggacga cacgaagttc aatgtggtca tcgcgaacct cggcgagaaa       300
     tatatcgagc aagtagaaga tgtagtgatg gacccgccgg cagtcgaaaa atacgaacac       360
     cttaagaagg aagtcatcaa gcggttgacc gaatcagaca gttcgcgcgt gcggaagtta       420
     ttggagagcg aagaaatcgg cgatcggaca ccttcgcaat ttttccgcga cctcaggaaa       480
     ctcacgaccc cgtcaatacc tgatgatttc gtcataacac tgtggaagac tcgtttgccg       540
     gcaagcaccc agcgggtatt ggcagcttcc gcggatactg acgttaccgc catcgtcgaa       600
     atggctgacc ggatccacga aatcaaaccg gaacaagaac ggattacagc ggtagcgaag       660
     gacgcgattt cgaccgagat gcaagtcgcg tttgcgcagc taacattgaa gatcgacgcg       720
     atcgagaaag cgcagcggcg ttttctttcg cggacgcggg gacgcgaccg atcccgcggt       780
     aaatcccgcg accggagggc cctgacgcaa gggggaagtg aattagaggg aatatgctgg       840
     tatcatcaga agttccagaa caacgcaacg aagtgccgac ccccgtgtca gtggaaggcg       900
     gaaaacgagg agagtcgttc gtgaacgcgg cactcgacga cgattctaga tcccgccgca       960
     ttttcgtgac cgatagaaag actaagattt ctttcctcgt tgacacgggc gctgatgtgt      1020
     gcgtgtatcc tcgcaatagg ttgcgaaata cgaagaaatg cgaatacgaa cttttcgcag      1080
     ctaacggtac gccaatagcg acatacggaa caaccgcggt ggattcggat ttctcccttc      1140
     gccgaagttt caaatggcga ttcgtgatcg cggacgtgag tacatctatt atcggcgtag      1200
     acttcctgag ccattatgga ttgctcgttg acccgcgaaa caaacgttta atcgattcga      1260
     tcacgagtct gtcgacgatc gggcacgcgg ctagcgctca agttgtcacg gtgaagacgg      1320
     ttttcgggaa gtcggcgtat catcagcttt tgagtgaata ccctgaactc actcgaccgc      1380
     ctgtgttccg aggggagacg ataaaacata acgtgaaaca ttacattaaa acaacgccag      1440
     gaccgccagt ttataataaa cctcgccggc tcgcccccga tcgattcaag gaagtcaagg      1500
     ccgaattcga cctcatgatc gaacaaggaa tcattcgacc ttcgaagagt ccgtgggcat      1560
     ccccattgca cgtcgtaccg aagaaagacg gcagcttacg accttgtgga gactatcgtg      1620
     cactcaatgc ccgcaccatt cccgaccggt attccccgcc gcacattgaa gatttcgcgc      1680
     agcgcctgca tggaaaaagg attttctcca aggttgattt ggtgagagca tatcatcaga      1740
     tcccggtagc gcccgaggat gttgaaaaaa cggcaatcac gaccccgttc ggtcttttcg      1800
     aggcactaaa taccatgttc ggattgcgta acgctgctca aacgtgtcaa agattcgtcg      1860
     acgagatcac acgcggttta gattttgtat acgcttttat cgacgatttc cttatcgcgt      1920
     cggaagacga gacgcaacat tgtgaacact taaaagtcct atttaagcgt cttagcgaat      1980
     acggcgtcat tataaatccc gcgaaatgcg ttttcggcgt taacgaaata actttcctcg      2040
     ggtatactgt caacgaacac ggaattaaac cgctggccga gcgcgtcgaa gcaatcgaaa      2100
     agttttccga acccgcgaca ttaaaacaac tccgaaggta tctaggaatg attaatttct      2160
     accgacgttt cattcctgga gccgctcgaa tcttacaacc gctaaacgaa ctcacgaaag      2220
     gtctgaaaaa gggcaacgcg cctataacat ggaccgatcg cacgcaaaac gctttcgtcg      2280
     aatcgaaacg cgctctcgca aacgccacaa tgttggctca ccctgtaccg ggcgcgtcga      2340
     ttagcatcgc tgtggatgca tctgactacg caatgggagc agctttgcaa caactcgtgg      2400
     cccatgaatg gcaaccttta ggattcttta ccaaatcttt atctccttca cagcaaaaat      2460
     atagcgcata cgatcgcgaa ctactcgcta tgtatagcgc agtcaaacta gcgtgctcaa      2520
     ctaagcgtgc tttaagcacg ctttagaagg taggaatttt gctattttca cggatcataa      2580
     accgcttatt ttcgcgttta atcagaattt agacaaatgc tcgccacgcc aatttcgata      2640
     tttggattat atcggacaat tcacaacaga cgtccggtat attaaaggtt tagacaataa      2700
     cgtagccgat gcattgtctc gcgtcgaaac aatctcgaaa acggttgatc acaaaactct      2760
     ggaagccgcg caaaaagacg acctcgagtt aggtagaatt ttaaaatccg aaaatagtgc      2820
     gttaaaactt aagaaaatac attttcccga ctgcgacagt ggcatttatt gcgacatagc      2880
     gagcgacacg gcaagaccat atgtccctca acccctgcgg cgcgtcatat ttaactcgtt      2940
     gcatggactt tcacatccag gtattcgagc tacgcaaaaa cttataacca aacgctttat      3000
     ttggccatta atgaacaaag actgcagaaa ctggacacgg caatgtatcc cttgccagcg      3060
     atgcaaagta accagacatg tgtctgcacc cgtcaatgat tttggaagtt tggccggacg      3120
     attcgaacac gtgcacattg accttatttc aatgccttat tcgcaaggat ataaatattg      3180
     cctcacgtgc atcgaccgtt tctcccgctg gccggaagtc atcccgatca tcgatatgga      3240
     agcagcaact gtagcatcag cttttatctc cacatggatt gctcgttttg gcgtaccttt      3300
     gagaatcaca tccgatcaag gacgccaatt cgaatctgat ctattcagag aattatgtag      3360
     aatgctgggc actaaacata ttagaacgac agcctaccac cctgaagcaa acggcatggt      3420
     agagaggctg catcgacaat tgaaagcagc tataaaatgt cacgagacag agaactggac      3480
     ggagatttta cccatcgtcc ttttgggtat acgaacggcg atcaaagacg acctgaaagc      3540
     gacggcagcc gaaatgatct acggcacagg aatccatcta ccggcggaat tcttcgtacc      3600
     tagcgaccaa gaggcaaact cagatttcgt cgcgcgtctc agacagcgcg taaacgatat      3660
     taagccaagc ccagttacac aacatggcac caagcggacc tttgttttca aagaactttc      3720
     atcatcaccc tatgtattcc ttcgtcacga tgctgcaaga ggaccattgc aaccacctta      3780
     cgacggacca tatgaggtaa tcgaacgagg cgaccagaat ttcgtagtca agatcaaagg      3840
     aaaaaacgta agagtcacga tcgaccgact aaagcctgct ttcgtcgtat ctgaacatat      3900
     agatcagaga ggccacgaag acaacatccg tgaagagatc attgcagctg aaccccaacc      3960
     tcaaccgaca cagaacgaaa acggacgtcg attcacgtca cgagccggaa gatcgatccg      4020
     ttttcccgag cgttttcagg ccggattcag ataagtccct ggatatatgc ccgattttgc      4080
     ttaacatata agcaatggga ataatgccac cttcaccacg tacaaaatcg acgcgaaaat      4140
     ttttttccga acaacagtac atcgtttgcg ttcacgagcg ttatcactgg taagggggta      4200
     ctg                                                                    4203
//
ID   Gypsy-1_Cfl-LTR repbase;    DNA;    INV; 329 BP.
XX
AC   AEAB01004336;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_Cfl_;
KW   Gypsy-1_Cfl-I; Gypsy-1_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-329
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01004336; Positions     330       2.
XX
SQ   Sequence 329 BP; 96 A; 91 C; 67 G; 75 T; 0 other;
     tggcggacac tcacgtgtgc ccgaaaaaga aaagtcataa aagtaaaagt tacagcacgt        60
     aaatctcgag tttacaaggg cgaacccgaa cgtgttgaaa acaataagat tttcacacat       120
     atgccgggca ttcctagcct ttccgtagac gacagattct caccctttcc gcctaagcat       180
     tcggctgcct acatgcgacg cgaccggacg ggcggcaccc gcgatgagta atcccccgcg       240
     attaggaata agcactcgtt tgtatgtaaa ataaactgta catatcctct gtagtgattc       300
     ttactccatt tccacgcacc accacctca                                         329
//
ID   Gypsy-1_CiLe-I repbase;    DNA;    INV; 5376 BP.
XX
AC   .
XX
DT   15-NOV-2019 (Rel. 25.01, Created)
DT   15-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bed bug genome - internal portion
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_CiLe-I.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-5376
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bed bug genome.";
RL   Repbase Reports 20(1), 79-79 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. ORFs are broken.
XX
SQ   Sequence 5376 BP; 2211 A; 930 C; 677 G; 1551 T; 7 other;
     aaaatcggta gcagagcgtc tgacmattca attagtcaga gtgttacgat ttactactga        60
     ttakaaagta attaagtaac aatgggaaaa aataaaaaaa gttccacaca aagatcaccg       120
     ataaatactc ggtcgcaaac aaaaattata caagaagaaa aagaaaaatg gacgcaaaaa       180
     attatagata atttgataga agttatatta aataaattgc aaakaacaca ggataatgat       240
     ataatgaaag aattgatttc ggatatcaaa caagaattta gtatgaaagg taataaagaa       300
     gtaggtgaaa ccgacaaaga cacagacgca aatattgata ccaaagagaa tgttccacca       360
     aagactgaga acatttctga ttcacatata atagggtcca catttctaac awatacacag       420
     aatacatgtc ctgactttag cttattagat catgaagaat caggttcaca acaggtttcc       480
     acagattcaa sttcgsataa tgaatccata gattttaaaa ataagtcgaa atgccataaa       540
     aaatcaaagt tcatctcata cacactagaa cataaattac aacaccttcc ttattttcat       600
     ttgtacaacc cacaatcaat aataaatttt ttattaaaac tcgaacctat tgcaagaaga       660
     aataaaacgc aatttaaatc aatattatcc atactattag agagagaaaa taacaaatta       720
     ttggctaatt tcatgtacaa tgccctaata tttccaaaaa taacttttca catatttgcc       780
     tcttcactat tacaaaatgg attgtctgag aaacaatata tgcaggttaa aacaagcatg       840
     ttattccgac ctcaaccaga aaatattaat ttacgagaaa acattgaaaa tcaaatgact       900
     ttaataaaat tattcaatct aaaaaatgag caagaaaatg tacgatatat attaaatgct       960
     gtacatccca aatatttagt tttattagga actaatgtgt caataaataa ctacacagat      1020
     ttatttaaaa aaataaaaaa catagaaata attttgaacg aaacatacgg ttatggtgag      1080
     aataacatcc ccaattttaa ttataaaccc acatatgcag atgtaattaa aacgaaatta      1140
     ttacctacag aagtcaacta caattacgat tataatgagc taccagcaag atttcacagg      1200
     caaacattca ataatagaaa ctttaacata caaaatttta atagaacctt tcaatcgagg      1260
     cccagagttc acaacaatta ccctaacaat agatttaacg gtcaaaattt taatcgccaa      1320
     aacaataacc gaaataacta ttacagaacg gtgaattatc gtaacaggca acaaaacaat      1380
     cgttttataa gcgctaatta taacacaaat ccgaattaca gtaattatac acctaaaaat      1440
     acttcttatg gaaaccgttc aaaaaactat tcaacaaaaa aaaacataga ttacctagca      1500
     aaaaaaagtt aaatttcaag acaattatga caacaaagcc ttttcaattt tgactaagca      1560
     tattaataat tttaaaaaat ttaaagaaat agtagatcaa gcccatgcag tttctgaaca      1620
     aaaatataca taaaaaaact aattggaatg acacttctcc caaaatgcac aaaattacaa      1680
     aatataacct tgccaaaaat aaaactcaat attaataatt ctataatcaa tgcattaata      1740
     gacgcaggaa gtacaattaa tgctatatct gataacttat tccaaaaatt aaaaaagaac      1800
     acttttaaaa aattgcaatt taacaatact aatgtaacat cagttaatgg agatagtgtc      1860
     caattaaaaa ctaaaattct attaaaaatt aaatttcaaa accttacatg gccaattgaa      1920
     tgttacgtaa taaacaatat gccaatggaa gtattattag gttatccttt ttttaaaaaa      1980
     aacaggtatt atattagatg cccataataa taaattatct tttgcaagta accctttaaa      2040
     atcatatgac ttaatatata acaatcaaaa taacaaccat gaactagaaa ttacgtctgc      2100
     cgaaagtgag aacaaagatt tcaaaatagt aaacaacgtt aataccgaag ccctcagatc      2160
     atatctagtt aagaaattcc ctaacgtgtt aacaacaaaa attggatgtg ccagaaattt      2220
     tagtttaaaa atatttgtta aaccgggccc acctataaat caacccccat atccgttgaa      2280
     tcctattgaa ctaaaaaaaa tgaaagaaat tacggacgag ttgttagatc aaaaaataat      2340
     ccaagaaagt tattcacctt gggcctcacc ttgttttcta attccaaaaa aatccaatcc      2400
     ggaaaataaa agattagttg taaattataa aaaaattaac gaaagaatta aatttacagc      2460
     atggccatta cccagcatag aacacatatt ctgccatatt agagacgcta gatactttac      2520
     gattatagat ttatcaaacg ctttccacca aataccatta gtaaagcaat ctagatgtta      2580
     cacagcattt aaaactccgt atggacatta tgaatataac agaataccat ttggtataag      2640
     tttaggagca caaaccctta cacaatcatt tagaaaattt ttcccatata aaatataaat      2700
     ttgtatggaa ttttcttgat gatatcatta tatattcaaa agatcaacaa cagcataaac      2760
     aacatataga acaagccatg caaatattgc aaaataatgg attaactgta aaccctgaaa      2820
     agatgaaaat aatgcaaaca tcagtatcgt tcttgggcca tcaattatca tacaattcta      2880
     taaaaataga tccagagaga atatctgctg tacaaaagtt agaaacaccg acgacattaa      2940
     aacaagtttt agcgttttta gggttatgtg gattttttgc gcggtatatt ccaaaatttt      3000
     cagaaatagc ggcaccggca ccactacata atttaaaaaa aataaataat gcggagttag      3060
     tttggactta cgaatgccaa caggcatttg atactttaaa aaaatgttta acctctccac      3120
     ccttattaac agttcccgat ttttctaaag aatttttact ttatactgac gcgtccaatg      3180
     cagctatagg tagtttatta gcacaaaaag ataacgataa tggggtacag ccgattgcat      3240
     tttattcaaa aaaattaaca aattgtgaaa aaaattatac aacatacaag aaagaattgt      3300
     acgcagtatt attaagcttt aggcatttta aacattattt aaaaaacaaa ccttttaaat      3360
     tatacactga ttgtaatgga ttagcgatgt tcctaaaggg agatagatca aagatcacat      3420
     ccaacccagc aattagatgg atttctgagt tggattctta ttcttttgaa gcaaggcatg      3480
     ttaaaggaaa aaataattcg gtggcagatt atttgtcgag atttcaagaa gcagatcaac      3540
     atttcgttga cgataatgaa aataacaaca aaaacaacat tcttgaagac cttaccttat      3600
     ttacctctcc attacaatcc ctacccaaat tattcgaaag cttcccgcaa ttacaaaaag      3660
     aagacaaaaa catagccgat agattacaaa gtaaagatcc atcattaaaa attataaaca      3720
     atttagtata ttacattcct cacaacaaaa ataacaaaaa aaaattaata gtaccacaat      3780
     ctttgcaagc ggctttgttt gaatattatc ataatagtac atatggggca catttgggct      3840
     ttaaaaaaac cttgtcaaaa ataaaaaagt tgtttaccta caagaatatg aataatgata      3900
     tcaaacagag agttagacta tgccaaacat gtaaaaaaat taaacctaat aacctacctt      3960
     ttccaaaata tttacataac actccagcaa ctagaatatt tgaaagaata tatatcgatt      4020
     tcattggtcc attacctaca tcatcctatg gtaacaaata tatattttta atagtagatg      4080
     catttagtaa attcgtactg gcgataccct gcagaaatac taatacagaa acggttttgc      4140
     gaattttaaa atatcatgtt ttcatgcatt atggtttacc aacatatatt gtttcagaca      4200
     gacaatcatg ttttcgagca caaacgtaca aaaatgcttt gtttacacta ggaataacat      4260
     atattctcaa tatatcttat tacccgcaag cgaatctagc cgagagatat atatcaggga      4320
     taaagaaggc aatcagagtg tttcattctg aagatcaaaa acattgggaa aaaaatttat      4380
     ttctgtttat tatggcttta aattcggcac ccagtgaaac aactaaaact tcacctgcgt      4440
     taatattttt aggaagggaa atacaacacc caataacatt gaaatttaac attgaacaag      4500
     aaatgaaaca attaacacca tctgaacttg agtccttgtg gaaaactaca ttgcaaaatt      4560
     taaaagctgt atacaaaaaa atatttccaa aatgcaacaa atgaaaacat taccatcttt      4620
     acaaattggc gatctagtat attataaaac atatatacta tcaaacaagc aaaaagaaaa      4680
     ttcaaacatc actttgtaat cagttttcag gcccttataa gataataaat tttttaaata      4740
     aagtttcata cttaattcaa ttgatatctg atccgaaaat tataatccat gctcatttga      4800
     cacaattaaa atattcttcc ttaaataaaa aataaataga taaataaaat aaatatataa      4860
     ttttttgcta atcgatacaa tctaatggaa cttctacaac gtctgatgtt ccttaactac      4920
     cgaagcaaca agtgtttcat cgcctgaacc atcatcatcc catatactgg ccatggtact      4980
     tctgaatctc ctcaattacc gacatcaact aaagataacc catcttgaca accttcagca      5040
     tccagtgagg cttcttcacc aatctacaac gtcggaggtt agaatgtcat caactaccga      5100
     aactacaagt gtctcatcgc ctgaactatt gtcatcccat atcctagtta tggtactttg      5160
     gaagctcctc aattaccaac gtcgactaaa gatagctcat catcacaacc ttcaacatcc      5220
     agcgaggctt cttsaccaac tctgcctact cctgaatcac caacatcaag ggaaaatcat      5280
     actcaacaac tatccggctt ggacatcacc actcctacat gtcaaggaat ttcttttttt      5340
     tcttcatttt ttttctttgt atgcgggggg aatatt                                5376
//
ID   Gypsy-1_CiLe-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   15-NOV-2019 (Rel. 25.01, Created)
DT   15-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bed bug genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_CiLe-LTR.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-490
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bed bug genome.";
RL   Repbase Reports 20(1), 78-78 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.  4-bp TSDs.
XX
SQ   Sequence 490 BP; 162 A; 50 C; 93 G; 184 T; 1 other;
     tatggcggcg aactttcaaa ttgtcgccaa acccctactg ctagaatatc ccatcgttca        60
     atgcgagaca attggaaaag gaagaggctc tatgaggaat ggtgggggag tcgggtttcg       120
     agcgagaaac ggaaaggacg aaagaagtgg cctgtgagag tctgcgcaaa ccagaaaaca       180
     agaagtgtgt aatttatttt tttatatcgt atgtacgawt tataattttt caaaaaatta       240
     tatgagctca tagttttggc cataggagaa ttagtttata tttttattat tttattttgt       300
     atataaacaa ggttgaattt tttttaaata attaaatata ttggacttta taagtaggaa       360
     agtatttgtt tattttttta attataggaa agtatttgtt tatttttttt attttttaat       420
     tatagaaaga attgtttaat aaataggttt atagtggaat ttattttatt taatttaccc       480
     taacactaca                                                              490
//
ID   Gypsy-1_CoFl-I repbase;    DNA;    INV; 4608 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_CoFl-LTR; Gypsy-1_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-4608
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2291-2291 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           213..989
FT                 /product="Gypsy-1_CoFl-I_1p"
FT                 /note="gag."
FT                 /translation="MPATDTTGLEELLAKLLQRAQEQLPELPTYGACNHED
FT                 PEVFLAQCELYFKAHRTLDTQQTLVATKGLRGDAEKWWQVYKYLSFTFKQF
FT                 GELLRARFDSPAIQGKLHSELYSKHQTEKEPVAAFLQEKYLLFKRISPAAE
FT                 EEVIITTVVELIRPSIRQFLRSHTFKTYADLLTMAVQLEKDEEDLTKTRGK
FT                 KSGTDAKQAPVTTSTGANPNPWPPKCHFCPDYHLHKDCPIRIARASTIPGN
FT                 ETGVSGEPATGAPEGRRQ"
FT   CDS           608..4396
FT                 /product="Gypsy-1_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KNQPCSRGRSNNHHGRRAHSSIYSSVSPKPHIQDLRG
FT                 SSHYGSPVGKRRRRPHEDTGQEVWYRRQASPSDYLYRSQPKPLATQVPLLS
FT                 RLPPPQGLSHSNCSSLNYPGKRNWSVRGAGNRRSGGTPAINVTSMPRQPLQ
FT                 KIMVGLGQREVAALVDQASTDNFVHPSLLSGQEKITPYTQQCDLACGSATL
FT                 TTSGSVCLDLRIQEKSFKFSFLVAPDLRHQMVLGLTTLYTEKSILDLTRGV
FT                 LYFGSSQRITIPFVSRPSRENQQTALNLDQVQHGFTGEERTGLFKLLQGHA
FT                 EVFGPLTGKLRQTRTIQHEIRVRPHQPFRLAPYPCSDKRRELIEEQVQEML
FT                 AGGIIEPSFSSYSSPVVLTPKKDGTMRFCVDYSRLNSITEDTSQRVPHIHH
FT                 AVKDIGGAIWFSKLDLKSGYWQIAMAPESMQYTAFSTHTGGCYQFRVMPFG
FT                 LKGAPGTFQRLMSQEVLTGYLGKFCLVYLDDIIVYSNTQEEHLRHIALVLE
FT                 RLQIHGLTVAIGKCVFGVSELTYLGHQVTAEGNKALPEHVEKLCSLPVPKT
FT                 RKQLQSFLGTSGWLREYVPRYSEITAPLSDLISKKRPYKWTPEAQEAMERL
FT                 KKELSKPLHLARPHEGWPYVLQTDASARGMGAVLYQIRPDGQRSIISYASA
FT                 KFNPCEAKYHSNEQECLAMVWAIKKYRPFLEDRPFTLRTDNKGLTWLRTAK
FT                 ETRDKLKRWSILLQEYNPIIEHCPGRENQLADFLSRNPVEEEPDNLDDVDR
FT                 ILPPTNSRETPTVPVCCVVETPSLLNEIKDAQLQDPYCLELGHKIIQAAES
FT                 PTLSPSDTQFLSCHGLVDDLIWQRPTKDSSWKVYVPQSMVPRVLYEFHDTH
FT                 HAGHPGMEETARSIKGYHYWPGMNAEIKKYVRDCRLCAYYKRAITAPGTMR
FT                 PHQPKHPWEIIAIDLMGPYPKSSRGRRFILVVTDLFSRWVEAFPLGSSEAP
FT                 RLTQLLEDEVFGRWGYPRVILTDNGRQFIGQYWQDACMRWEIQHWTTPIYH
FT                 PRANPTERRNQEIKKGLRLHLHGQSHNKWDVHLPRVLYQLRNRRNAATGAS
FT                 PAQLLLGHDTSRPGEWRTRQLAEQLPQKGYIDAIEHQEQYQKQHYPTGQPS
FT                 PIYPPGTLVYIRNHPLSRAPEQFCAGFAQKWEGPYPITAHMAGDIYLISTG
FT                 RATTKLHVSQLKLAHTEAIDRRRRPNAHFDLPASTTPQHTTGPQPSSRSDQ
FT                 EIATTNASEISRADKSTRPFRSNSEELGDVSVPPPGGPDGPSQRYNLRPRN
FT                 HK"
XX
SQ   Sequence 4608 BP; 1304 A; 1248 C; 1079 G; 977 T; 0 other;
     atttggcgct cgacgtgggg ccatctccca agaactctca gctgctgctg gggggtaccc        60
     gcgagcagtg tgcccacgag tcaccgagtc caacagcgcc gccgactgat aaacgcctaa       120
     ctcgccatca agcaaaactc cttctaggtg ggaagaaaca cctagtggcg ctcgaaaata       180
     aaaaaacaaa gaagaaaaaa acacactata caatgcctgc cacagacact accggcctcg       240
     aggagctact agctaaactt ctgcaaaggg ctcaggagca gttacccgag ctacctacat       300
     atggagcttg caaccatgaa gacccggagg tctttctcgc ccaatgtgaa ctctatttta       360
     aggctcatcg caccctggat acccaacaga ctttggtagc aacaaagggg cttcgaggcg       420
     acgccgaaaa atggtggcag gtttataaat atctgtcttt taccttcaaa caatttgggg       480
     agcttcttcg ggcacgcttc gacagtccgg cgatccaggg aaaactacat tccgagctat       540
     attccaaaca tcaaaccgag aaggaaccag tagcagcatt tctgcaggag aagtaccttc       600
     tgtttaaaag aatcagccct gcagccgagg aagaagtaat aatcaccacg gtcgtcgagc       660
     tcattcgtcc atctattcgt cagtttctcc gaagccacac attcaagacc tacgcggatc       720
     ttctcactat ggcagtccag ttggaaaaag acgaagaaga cctcacgaag acacggggca       780
     agaagtctgg tacagacgcc aagcaagccc cagtgactac ctctacagga gccaacccaa       840
     acccttggcc acccaagtgc cacttctgtc ccgattacca cctccacaag gactgtccca       900
     ttcgaattgc tcgagcctca actatcccgg gaaacgaaac tggagtgtca ggggagccgg       960
     caacaggcgc tccggaggga cgccggcaat aaatgtcacc agcatgcccc gccaaccact      1020
     acaaaaaatt atggttggac tgggtcagcg agaagtagct gctctggtcg accaagcgtc      1080
     taccgacaat tttgtacatc cctcactact ttcgggacag gagaagatca caccctatac      1140
     tcaacagtgt gacttggcct gtggtagcgc aactctcacg acctccggca gtgtttgtct      1200
     tgacctacgg attcaggaaa agtcattcaa attcagcttc ctcgtagcac cagacctacg      1260
     acatcaaatg gtcctgggtc taacaacact gtacacggag aaatctatct tggatttgac      1320
     gaggggagtg ctatacttcg gaagtagcca acgaataact atcccattcg tgtcacgccc      1380
     atctcgggag aatcagcaaa cagctctaaa cttagatcag gttcaacatg gattcactgg      1440
     agaagaacgt actggcctct tcaaactgtt gcagggacac gcagaagtct ttggaccttt      1500
     gacgggaaag ttacgtcaaa ctcgcaccat acaacacgag atccgggtca gaccacacca      1560
     acctttccgg ttagcaccat atccttgctc agacaagcgc agggaactca tcgaggagca      1620
     agttcaagag atgctagctg gtggcatcat cgagccatcc ttctcatcat atagctcccc      1680
     tgtcgtcttg acacccaaaa aagatggcac catgcgattc tgtgtggatt atagtcggct      1740
     gaattcgatt accgaagaca cttctcaacg ggtaccccac atacatcacg ccgtaaagga      1800
     tataggtgga gctatctggt tctcgaagtt ggatctcaaa agcggctact ggcaaatagc      1860
     gatggcaccc gagtctatgc aatacacagc tttctctaca cacaccggtg gttgctacca      1920
     attccgagtt atgccattcg ggctgaaagg agcacctgga accttccaaa ggctaatgag      1980
     tcaggaagtc cttaccggat acctggggaa gttctgtctt gtctacctgg acgatatcat      2040
     cgtctattcc aacacacagg aagaacacct cagacatatc gctcttgtct tggagaggtt      2100
     gcaaatccat ggactcacag tagccatcgg aaaatgtgtc ttcggggtgt cggagttaac      2160
     atacctagga catcaagtca ccgccgaggg gaacaaagcc ttacccgagc atgtcgagaa      2220
     gctatgcagt ttaccagtac caaaaactcg aaaacagctg cagtccttcc ttggcacaag      2280
     tggatggctc cgggaatacg tgcctcgtta ttccgaaata acagcgcctc tctcggacct      2340
     cattagcaaa aaacggccat acaaatggac accagaagct caagaagcca tggagcggct      2400
     caaaaaagaa ctctcgaaac ctctacattt ggctcgacca catgagggtt ggccatatgt      2460
     cttgcagacg gacgctagcg ctcgtggaat gggagccgtc ttatatcaga tcagacccga      2520
     tggacagcgt agtatcatca gttatgctag cgccaagttc aatccatgtg aagcaaaata      2580
     tcatagcaat gagcaagagt gcttagcgat ggtttgggct attaagaaat atcgaccctt      2640
     tctggaggat cggccattca ccttgcgaac ggataacaag ggcctcactt ggctacgcac      2700
     ggctaaggaa actcgagata aattgaagcg atggtctatc ctactccagg agtacaatcc      2760
     catcatcgaa cactgtccgg gtcgagaaaa ccagctggcg gacttcctct cacggaatcc      2820
     ggtggaagag gagccggata acctagacga tgtggaccgg atactgcctc caacaaattc      2880
     tcgggaaaca ccaactgtac ctgtctgttg cgtggtcgaa acaccttcgt tactgaatga      2940
     aattaaagat gcacagctcc aggacccgta ttgtctcgaa cttggtcaca agatcatcca      3000
     ggcagcagag agcccgactc tctcaccatc agatacccag tttttgtctt gtcatggact      3060
     cgtcgacgac ttgatatggc agcgaccaac gaaggactca agttggaagg tctatgtgcc      3120
     ccaaagcatg gtaccccgag tgctctatga gttccacgac actcaccacg cgggacatcc      3180
     aggaatggag gaaacggctc gcagtatcaa aggttaccac tattggcctg ggatgaacgc      3240
     cgaaatcaag aaatatgtcc gggactgtag gctgtgcgca tactataaaa gagcaatcac      3300
     tgctccaggt accatgcgac cacatcagcc caaacaccca tgggagatca tagccattga      3360
     tctaatgggt ccatatccaa agagctctag gggacgacgt ttcatactgg ttgtcacgga      3420
     tctcttcagt cgatgggtcg aggcctttcc tctgggttca tcggaggcac cccggctcac      3480
     ccagctcctg gaggatgaag ttttcggtcg gtggggatat cctcgagtca tcctaacgga      3540
     caatggtcga caattcatcg gtcaatactg gcaagacgct tgtatgcgtt gggaaattca      3600
     acattggact actcccattt atcatcctcg agccaaccct acggagcgcc gaaaccagga      3660
     gattaagaag ggccttcgtc tacatttgca cgggcaatcc cacaacaaat gggacgtaca      3720
     cttaccgaga gtattatacc aattaagaaa tcgccgcaac gccgccaccg gggcatctcc      3780
     ggctcaactg ctgttgggtc atgatacctc tcgaccaggg gaatggagaa cccgtcaatt      3840
     ggcagaacaa ctcccacaaa aggggtatat tgatgccata gagcatcaag agcagtacca      3900
     gaagcaacac tacccgactg gtcaacccag tcctatctac ccaccaggta ccttggtcta      3960
     catacgtaac cacccactct cgagggctcc agaacagttt tgcgccggct tcgcgcaaaa      4020
     atgggaaggt ccctatccta tcacggctca tatggcaggg gatatctacc taatctctac      4080
     gggtcgagct accacgaaac ttcacgtttc tcaactcaaa ctcgcccaca cggaggccat      4140
     cgatcgccgc cgacgtccga atgcacactt cgacctgccg gcatcgacaa ctcctcagca      4200
     caccaccggc ccacagccct cttcaaggtc cgatcaggag atcgcgacaa ccaatgccag      4260
     cgaaataagc agagcggata agtccactag gccgttccga agcaattcag aagaattagg      4320
     tgacgtctca gtaccaccac ccggaggtcc tgatgggcca agccaacgtt acaacttgcg      4380
     tccacgaaat cataagtgaa gtgaagtgaa aatatgtgta catagtgaaa agacactgaa      4440
     caaagcagta agagtgtgag tgtgtatgaa accgcggacc tttgtcaatc gagaatggat      4500
     gactgaatga ccgcgaaaac ttatatcgag agtgataact tctccgactc ctgtagctct      4560
     accactgctt tctcaaattt attataaact ctttaaaacg ggggggtt                   4608
//
ID   Gypsy-1_CoFl-LTR repbase;    DNA;    INV; 1175 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-1175
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2296-2296 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 1175 BP; 348 A; 316 C; 233 G; 274 T; 4 other;
     tgttaccatc cggggcatta ttttattaat tattgtatat taaaataatc atttttctta        60
     aattagatcg tttctacata aatttgaatt ttgaaatttc gcgcgcagct ccgacttcca       120
     actagtactt aatagtacca cctatcgctc gccaggtggc gaccactagt ctttagcgaa       180
     aatcgcaagt aagaaagcga cgtaaagtat ataagacgga ctgtgtgacg actgattggk       240
     atcgatccga gatatgcaaa tacgtgtaat gcatacctct taagccactc aattgactta       300
     aagcagtgta gataagtaca tattcaataa atatcactgt accaatataa gacacttgtc       360
     tacactttct tttccctcga aagcctcttc ctaagtccta tcttcggtct gggtgctcat       420
     gamctccccc cctgtaactc aggagtggag acagttgacc ccaggccaac aaatagacga       480
     ttgtatcacc cagggatatg cagttgtcac ctccatagag ttccaaccca ggaaggcaac       540
     tcgggacgtg gcgatccagt tcccggagga ttttttcgaa ggtataacca ctccttccac       600
     cggtcagcat agaagtgatc ccactcagag gattcggacc accccgttaa agccgagtac       660
     ctttgccccc cgacgaccac ctccacccag tacaccctcg cctgctacga gcccagaggt       720
     gktggaggat tccaagccac tcatccggag tgtagtccag gtattacccc cactccaaaa       780
     ccccgagacc tctcgaccta gagaagatca ccgaggcgag tccaagagac ctcggcgagg       840
     gtaggagaga tggtgacatg twatatgtta aatttgtaat atcaaaaaaa aaaaaataaa       900
     aggcgttaaa aaaaaaaaaa aaaacagaca cccactggtc aacctggcga ccaactcgtc       960
     gaggcctcta cgaattaccg ctcaatcgcc gcacctctcc gatgagttgg attccgatga      1020
     atcaaacgga gccacaacgc caacaacatc ggaagcagtg ccaccatcgt tgttcgactt      1080
     aaagggacgg ctcgagtcac tcgagagtga ctctgatctc ttccaaccgc acttccccac      1140
     tcaaagtcgt ccaaccccaa cggccacttt taaca                                 1175
//
ID   Gypsy-1_CQ-I repbase;    DNA;    INV; 4450 BP.
XX
AC   AAWU01023480;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_CQ_;
KW   Gypsy-1_CQ-LTR; Gypsy-1_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4450
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 381-381 (2011).
XX
DR   Genome; AAWU01023480; Positions    7294   11743.
XX
CC   Positions [3404-3862] - Integrase core
CC   'ATGCA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..1448
FT                 /product="Gypsy-1_CQ-I_2p"
FT                 /translation="MPPKVTPKKDGPQQQPDLTAILAQLTAYLENQSKTQE
FT                 ALLEQLSKPKDSEFLMEALSNTIPEFVYDPQGGLVFDKWYSRHEEAFNKGG
FT                 EKLEEADKVRLLVRKLSSVDHDRYVNYILPENPPDRSFQDTVDTLKEMFGH
FT                 QTSVFFRRYQCLQTTKRNAEDFVTYASTVNRACEDFNIRTITSDQFKCLVF
FT                 VAGLQSERYKDIRTRLLAKMEGETAEHPMTLKKLLLECQHLDNLKHDTAVI
FT                 EGPKPAVKAVQQDRSGFRESGKPERKFDNRNPAKATPRRPCWQCGQMHFVA
FT                 DCSYTKHTCKTCGKVGHKEGYCACCSKPSGSGEGASHTAPGGGKKKHKKKR
FT                 ADGGGHSNGVYAVNKEGVVRRRKFVEVLINNEPIELQLDCGSDYTIISTDS
FT                 LPLLGNPETIPTELRVATASGKPLPLELEFECDVTFRGTTKRSVCYVTPVR
FT                 GSRFLGAT"
FT   CDS           1451..4438
FT                 /product="Gypsy-1_CQ-I_1p"
FT                 /translation="MEAFGLYDIPINDFCKQLTTAEDSLACGAALKAKFPA
FT                 VFQEGLRRCTKTKIQLFLIDGAKPVFKPKRPVPFHSQRLVEKELNRLQDMG
FT                 VLEPVDYSDWAAPIVAVRKAQRDADGDPVVCICADYSTGLNAVLEANKYPL
FT                 PTPDDIFAKLAGSKFFSVIDLSDAYLQMEVEEESQKLLTMNTHKGLFKVKR
FT                 LPPGVKPAPGAFQKVVDNMLAGQEGAASFLDDVLVFGRTRAEHDRNLEQTL
FT                 QRIQDFGFRLKIEKCKFYMTEVKYLGHIINQNGIRTDPGKVSAISQMPPPK
FT                 NLTELRSFLGAVNYYAKFIKEMHQLRRPLDLLLKKDAKWAWSDDCQRSFER
FT                 FKELLKSDLMLTHYNPTLDIIVAADASQTGIGATIRHRFPDGSEKIIQHAS
FT                 RSLTPAEQAYGQIDKEALALVYAVTKFHRMLLGRRFVLETDHQPLLRIFGS
FT                 HKGIPTHTSNRLQRLGLVLLCYNFGIDYVSTANFGYADVLSRLIDSAAKPE
FT                 EEYVIAALYLEDDMSAVLEDSVGNTPVTSKMIAAATARDKVLKKVVQYLEG
FT                 EWPASASEIDNLDVKAFYHRKESLALTQGCILFGQRVVVPETYRKRILQRL
FT                 HHGHPGMVRMKSLARSFVYWPHIDKQVEDTVKQCADCAAAAKSPPHSPPEA
FT                 WPTPAGPWQRIHIDYAGPIDGLYFLIIVDAFSRWPEIYPTTTTTARATIQF
FT                 LRRTFARLGLPMVLVSDNAAQFTCDEFESYCKANGITHILTAPYHPQSNGQ
FT                 AERFVDTVKRGMKKINKGEPLQETLDVFLATYRSTPSGTTEQKSPSELLFG
FT                 RQMRTTLDLLRPPPTPVAEMKTTAENDQRREFAPGDLVYAKVHKRNDWYWE
FT                 AGKVIERLGLVNYNVWLDGQRSGLIRSHINQLRPRHESADSPARGRAVNLP
FT                 LDILLGEFGFAQTTTEDVTQAAVVEPKGANQPEITEQPGNNDGPEPAVIQR
FT                 PIRRASTGSIPLSCVPVPKTTNTRSGREVRLPPRFDHYVMS"
XX
SQ   Sequence 4450 BP; 1044 A; 1276 C; 1319 G; 811 T; 0 other;
     ttgtttggcg acgaggagta gtttcggttc gaagtagttt cgcgtcggtt ttcgggtttt        60
     cgcgttcgag cggggttcct aacctcaaaa tgcccccgaa ggtgacgccg aaaaaggacg       120
     ggccgcagca gcagccggat ctcacggcga ttctggcgca gctcaccgcc tacttggaga       180
     accagtccaa gacacaggag gctctccttg agcagctctc caagccgaag gacagcgagt       240
     tcctgatgga agcactttcc aacaccatcc cggaatttgt gtacgacccc caaggcggac       300
     tggttttcga caagtggtac tcccggcacg aggaggcctt caacaagggc ggggagaagc       360
     tggaggaagc ggacaaagtg cggctgctcg tgcgaaagct gtcctcggtg gatcacgacc       420
     gctacgtgaa ctacatccta ccggagaacc caccggacag atcgttccag gacacggtgg       480
     acacgcttaa ggagatgttc gggcaccaaa cgtccgtgtt cttccggcgc taccagtgtc       540
     tacagacgac caagcggaat gcggaggatt tcgtcacgta cgccagtacc gtcaaccgag       600
     cgtgcgagga tttcaacatc cggacgatta cctccgacca gttcaagtgc ctggtgtttg       660
     tcgctggtct gcagtcggag cggtacaagg acatccggac ccggttgctg gcgaaaatgg       720
     aaggcgagac ggcggagcac ccgatgactc tcaagaagct gttattggag tgccagcatt       780
     tggacaacct caaacacgac actgctgtta ttgagggtcc gaagccggcc gtcaaagcgg       840
     tccagcagga tcgcagcggc tttcgcgagt cgggcaaacc ggaacgaaag ttcgacaaca       900
     ggaatccggc caaggcaacc ccacgacgtc cgtgctggca gtgcgggcag atgcactttg       960
     ttgcagactg ctcgtacacg aaacacacct gcaagacgtg cggcaaagtg ggacacaagg      1020
     aaggatactg tgcttgctgc tccaaaccct ccggttccgg agaaggtgca tcacacacag      1080
     cacccggagg cggcaagaag aagcacaaaa agaagcgggc cgacggcggg ggacactcaa      1140
     acggagtgta cgctgtcaac aaggaaggtg tcgtcagacg gcgcaagttc gtggaagttc      1200
     tgatcaacaa cgaaccgatc gaactccagc tcgactgcgg atcggactac accatcatct      1260
     cgacggattc acttcccctg ctcggcaacc cagaaaccat tccgacggaa ctgcgggtgg      1320
     ccacagcctc aggcaaaccc cttccgctgg aattggagtt cgagtgtgac gtcacgttcc      1380
     gcgggaccac caagcgttcc gtgtgctacg tcactcctgt gcgcggttca aggttcttgg      1440
     gagcgacctg atggaagctt tcgggctgta cgacattccg atcaacgact tctgcaagca      1500
     actcacaact gcggaggact cgttggcgtg tggtgccgcg ctgaaggcga aatttccggc      1560
     ggtgttccag gaaggactca gacggtgcac gaaaacgaag atacagctgt tcctgatcga      1620
     cggggcgaag ccggtcttca agcctaagcg gccagtgccg ttccactcgc agcggctggt      1680
     cgagaaggag ctcaaccgat tgcaggacat gggagtgctg gagccggtcg actactcgga      1740
     ctgggcggca cccatcgtgg cagttcggaa ggcgcagcgc gacgcagacg gagatccggt      1800
     ggtctgcatt tgcgcggatt actcgaccgg gttgaacgct gtgctggagg cgaacaagta      1860
     ccctctccct acccccgacg acatcttcgc aaagctggct ggcagcaagt tcttcagcgt      1920
     gattgacctg tcggacgctt atctgcagat ggaggtagag gaggagtcgc agaagctgtt      1980
     gactatgaac acacacaagg ggctgttcaa ggtcaagcgt ctgccgccgg gagtgaaacc      2040
     cgctcctgga gccttccaga aggtcgttga caacatgctc gccggccagg aaggagcggc      2100
     gtcgttcctc gacgacgtgc tggtgttcgg tcgaacgcgc gctgagcacg accggaactt      2160
     ggagcaaaca ctgcagcgga tccaagattt cggtttccgg ctcaagatcg agaagtgcaa      2220
     gttctacatg acggaggtga agtacctggg ccacatcatc aaccaaaacg gcatccgcac      2280
     cgacccgggg aaagtgtctg ccatctcgca gatgccaccg ccgaagaacc tcaccgagct      2340
     gcgttcgttc ttgggcgcgg tcaactacta cgcgaagttc atcaaggaga tgcaccagct      2400
     gcgtaggcca ctcgatctgc tgctgaagaa ggacgcaaag tgggcctggt cggacgactg      2460
     ccaacgatcg ttcgagcgct tcaaggagct gctcaagtct gacctgatgc tgacccacta      2520
     caacccgacg ctggacatta tcgtggccgc tgacgcttcg caaaccggaa tcggcgccac      2580
     aatccgacat cgtttccctg acggttcgga gaagataatc cagcacgcct caagatcgtt      2640
     gacaccggcg gagcaagcgt acgggcagat cgacaaggaa gctctggcgc tcgtctacgc      2700
     tgtcacgaag tttcaccgga tgctgctggg acgacggttc gttctggaga cagaccacca      2760
     gcctctgctc cgcatctttg ggtcgcacaa gggaatcccg acacacacgt ccaaccgact      2820
     gcaacgactg ggactcgttc tgctgtgcta caactttggc atcgactacg tctccacggc      2880
     gaacttcggg tacgcggatg tactctccag actcatcgat tcggcggcca agccggagga      2940
     ggagtacgtt atcgccgctc tgtatctgga ggacgacatg tcggcggtct tggaagactc      3000
     cgttggcaac acacctgtca cttccaagat gatcgccgct gctaccgccc gggacaaggt      3060
     gctcaagaaa gtggtccagt acttggaagg tgagtggccg gccagcgcaa gcgaaatcga      3120
     caacctggac gtgaaggcgt tctaccaccg gaaggagagc ctagcgctga ctcagggctg      3180
     cattcttttc ggccaacgag tggtggtgcc ggaaacctac cgaaagcgga tcctgcaacg      3240
     cctgcaccac ggtcacccgg gcatggtccg gatgaagagt ctggctcgga gtttcgtcta      3300
     ctggccgcac atcgacaagc aggtggagga cacggtgaag cagtgcgcgg actgtgctgc      3360
     agctgcaaaa tctcccccac actctccacc agaagcttgg ccaacaccag cgggaccatg      3420
     gcaacgcatt cacattgatt acgcgggccc catcgatggt ctctactttc tcatcatcgt      3480
     ggacgctttc tcgcgatggc ctgagatcta tccgacgacg accacgaccg ctagagccac      3540
     gatccagttt cttcgaagaa cgttcgcacg ccttggccta ccgatggtgc tcgtgtcgga      3600
     caacgcggct cagttcactt gcgacgagtt tgagtcctac tgcaaggcga acggaatcac      3660
     ccacatcctc accgcgccct accatccgca atcgaacggg caagcggaac gctttgtgga      3720
     caccgtcaag cgaggaatga agaaaatcaa caagggagag ccactgcagg agacactcga      3780
     cgtgtttctg gcaacgtaca ggtcgacgcc gagcggaaca accgagcaga agtcaccaag      3840
     tgaactgctg tttggacgtc aaatgcgcac cacactcgac ctactgcgac caccaccaac      3900
     accggttgct gagatgaaga cgactgctga gaacgaccag agacgagaat ttgcacctgg      3960
     cgacttggtg tatgcgaagg tgcacaagcg gaacgactgg tactgggagg caggaaaggt      4020
     catcgaaagg ctcggcttgg tgaactacaa cgtgtggttg gacggccaac gttcggggct      4080
     gatccggtcg catatcaacc agcttcgtcc acggcacgag tcagcggatt cgccggcgcg      4140
     cggtcgcgct gttaaccttc cgcttgacat tctcctgggc gagtttgggt tcgctcaaac      4200
     aacaaccgag gacgtcacgc aagcagctgt ggtggaacct aaaggcgcga accaaccaga      4260
     aatcaccgag caacctggca acaacgatgg accggaacca gctgtgatcc aacggccgat      4320
     ccggcgggct tcgacgggaa gtattccgct gagttgcgtt cccgtgccga agacgacgaa      4380
     caccagaagt ggacgcgagg ttcggctgcc gccgaggttc gatcactacg tgatgtctta      4440
     aagagggaga                                                             4450
//
ID   Gypsy-1_CQ-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   AAWU01023480;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_CQ_;
KW   Gypsy-1_CQ-I; Gypsy-1_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 382-382 (2011).
XX
DR   Genome; AAWU01023480; Positions    7080    7293.
XX
SQ   Sequence 214 BP; 65 A; 47 C; 43 G; 59 T; 0 other;
     tgctatggca acactgtcca tagcgagacg ccgcaccaac acacttaacg ttgtgcggtt        60
     ggcacacctt gcgaggtgac agctttgtct taagcgagca acgaaaacag caagccacgt       120
     tttgtaatcg ctcatcttaa aattagtttt agacttaaat aaagtttcta atgttagtcg       180
     taattcgcgt acattatttg cgaaagacat aaca                                   214
//
ID   Gypsy-1_DAn-I repbase;    DNA;    INV; 4530 BP.
XX
AC   AAPP01018967;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DAn_;
KW   Gypsy-1_DAn-LTR; Gypsy-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4530
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018967; Positions   18196   22725.
XX
CC   Positions [1517-1942] - Reverse transcriptase
CC   'TATATA' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1175..3034
FT                 /product="Gypsy-1_DAn-I_1p"
FT                 /translation="MIGQEIFQLGFGVIFETDKLNIYKTKIINAIHEETSN
FT                 FENVLDTNIELSEIDKCKLKNILKHYSDNFINGIPTKRVTTGALEIRLIDE
FT                 NKTVQRRPYRLSVDEKILVREKIDQMIKSNVIRPSNSPFASPMLLVKKKDG
FT                 SDRLCIDFRELNSNTISDKYPLPLISDQIDRLRGGKYFSTLDMASGFYQIP
FT                 IHPDSIERTALVTPEGQYEFLVMPFGLKNASSIFQRAIVRALGDLAYSYVV
FT                 VYIDDVLIVAETKEEAYERLSIVLRVLSEAGFTFNVKKCAFLRTGIEYLGF
FT                 YIKDGEIKPNPSKIEALTVLSPPSTVTQLRQFIGLASYFRQFVPRFSEQMK
FT                 PLYELTSKLKTFDWKEKHEQIRQKIIKILTSDPVLSIFDPKLQIELHTDAS
FT                 ADGYGAMLIHKIDGKRRVIEYFSKCTTLSEAKYHSYESETLAVYNAIKHFR
FT                 HYLHGRKFIVYTDCNSLRATQKKAELTSRVHRWWGYLQAFDFSIEYRKGCQ
FT                 MAHVDFLSRNPIPKVSTVIRRVAEIRVDLATITNNWQIAEQQRDDSIIKIV
FT                 NQLNGEDVETDVMKTYEIRTGLLYRKIQRNGKTRCLPVIPKAFRWSVINHV
FT                 HEGMMHLGWQKTLDTVYEQFWF"
XX
SQ   Sequence 4530 BP; 1542 A; 771 C; 1022 G; 1195 T; 0 other;
     tcagaagtgg gatttcctcc gccacaaggg caaagttcca ctcactatac gtcagcgctg        60
     gaggagcaaa acaaaaacct catggaaatc ataaaggcca tgcaggcgcc aagagcttcg       120
     gcgtcagacg ggaaaaccac gcatgtgaca ctgcccaaat ttaatctcga tggtgcggga       180
     acagatgcaa cagcatggtg tactacggtc gacttaatct tcgcagacaa cgtacttgaa       240
     ggcagcgccc tagtaatagc actaagcaaa gcgctggaag gcagtgcttc acaatggctg       300
     tcacaggtat gctttgctgg catcacctgg acccaattca aggaactgtt catccagcga       360
     ttcgtgggaa ttgagacaac ggctgccgta ctgattaatg ttttaaatgg acatcccaga       420
     tctggagaaa gctttgctga atatggaagt cgcatagtta cgctattatt atccaagtgg       480
     aaatctacgg agctggaaga gattgcggtg tcaatagcgt tagcacacat gacacaaatt       540
     gacaataatt tgctgcgttg ggtttttaca accagcgtaa cgacacgtaa tgaactacag       600
     cggcagctgc aggcttgcgc cttcaagaag cgtaaaaacg aaattgatga atcttcgtca       660
     agtttggaca agaaaaaagt catagttgtg gaaaaattgg ccacaaatac gctcaatgcc       720
     gcgctcgtat ggagagctca ttctcaacaa aaggaaagaa ctatagtgga agcagcgttt       780
     ctggagggaa ggagcgatca aacataagat gctacaagtg tggtgaggct ggacatattg       840
     ctactgtatg ccccaaaggt agcaccagtg gaaacggcga gtacaaggag aagcgcatgg       900
     acatatgtta agttcttcag cctaagggct tattctatca aaggggtgag acctttccat       960
     tttttttgac tcgggtgccg agtgttcttt gataaaagaa aaattaagta acaaaattga      1020
     tggaaaaaga tttaataatt taattgtact tcgaggaatt gtcgacaata ttgttaaaag      1080
     ccatttgcag attttgtcta cgattcaaat atcacagttt aatttagaaa ttttgttcca      1140
     tgtagtatta gacaactatt tgaaacatga catcatgatt ggacaagaaa tattccagct      1200
     tggttttggt gtgattttcg aaacagacaa acttaatata tacaaaacta agattattaa      1260
     tgctatacat gaagagacat ccaattttga aaatgtactt gacaccaaca tagaattaag      1320
     tgaaattgat aaatgtaaac taaaaaacat actgaaacat tactccgaca attttataaa      1380
     tggaatccca actaaacgtg taaccacagg agcattagaa attcgtttga tagatgagaa      1440
     taaaactgtt caaaggcgcc cttatcggct cagtgtagat gaaaagatat tagttaggga      1500
     aaaaatagac caaatgatta aatctaatgt gatccgtcca agcaattcgc catttgcaag      1560
     tccaatgcta ttggtcaaaa agaaagatgg cagcgacaga ctgtgtattg attttcgtga      1620
     gctaaattca aacacaatct cagataagta cccgttgccg ttgatttctg atcagataga      1680
     tcgcttgcga ggcggaaaat atttttctac tttagatatg gccagcggat tttatcaaat      1740
     accaatccat cccgattcca tagaaagaac agcactcgtt accccagagg gtcagtatga      1800
     atttctagtg atgccatttg ggctaaaaaa cgcctcttct atttttcaac gtgctatagt      1860
     gcgagccctg ggtgacttag cctattccta cgtagtggtc tacatagacg acgtgctgat      1920
     tgtagcagaa acaaaggagg aagcatatga aaggttaagc attgtgctga gagttttgtc      1980
     tgaggcaggt tttacattca acgtaaaaaa gtgcgctttt cttcgcacag gaatagagta      2040
     cctgggattt tatattaaag atggtgaaat taaaccaaat ccaagtaaga tagaagcact      2100
     gacagttctg tcgccaccat ccactgtaac tcaattaagg caattcatag gtttggcatc      2160
     atattttaga caatttgtcc cgcggttctc agagcagatg aagccgctct atgagttgac      2220
     ctctaaactt aaaacgtttg attggaaaga gaagcatgaa cagatccgac aaaagattat      2280
     caaaatactg acgtctgacc ccgtactgtc aatctttgac cctaagcttc aaattgaatt      2340
     gcatacagat gccagtgccg atgggtatgg tgcaatgcta atacacaaga tagatgggaa      2400
     aagaagggta atagaatatt ttagcaaatg cacgacattg tctgaagcta aatatcactc      2460
     atacgaatca gaaactttag ctgtttacaa tgcaataaaa cactttagac attatttaca      2520
     tggcagaaaa tttattgtgt acaccgattg caattcacta agagcgactc agaagaaagc      2580
     tgagttgacc tcaagagtac accgttggtg ggggtattta caggcttttg attttagcat      2640
     cgagtatcgg aagggttgcc aaatggcaca cgtggatttc ttatcacgca atccaatccc      2700
     taaagtgtca actgtcattc gtagagtagc agagattcgt gtagatctag caacaataac      2760
     aaataattgg cagatagccg aacagcaacg agatgatagc ataataaaaa tcgtgaacca      2820
     actaaatggt gaagatgtag agaccgatgt aatgaaaaca tatgaaatta ggactgggct      2880
     attgtaccgc aagatacaac gtaatggcaa gactcgttgt ttgccagtga ttcccaaggc      2940
     gtttaggtgg tctgtcataa accatgtaca tgagggtatg atgcatttag ggtggcagaa      3000
     aactttagac acggtttatg aacaattctg gttttagcat atgtctaaat atgtcaagaa      3060
     attcgttgaa agttgcataa catgcaaatt ggctaagccc ccttctggaa aggcacaaat      3120
     ggaattgcac cctattccta agattgatat accttggcat actatccacg tggatataag      3180
     tggcaaactc agtgggcaaa acgacctaaa ggagtacatt attgtatagg tagatgcatt      3240
     tacaaagttt gttcacttat atcacactct taatctagac tcagaaaatt gcattaaagc      3300
     tgtgaagtcg ggcatatctt tctttggagt acccagtcga attatagcag atcagggcag      3360
     gagctttgcg agtaaaaaat tccgagaatt ttgctcatca aataaaattg aattgcattt      3420
     aatagccacg ggagtaagcc gtgccaatgg acaggtggaa cgtgtaatga gcacgttaaa      3480
     agctatgcta actgcggtag aaactagcga acgttcttgg caggatgcat tgcaagatat      3540
     ccagttagcc ttaaattgtt ctacaaatag agttaccaaa tctagtgctt tagagttgtt      3600
     gatagggaaa gaggctaggc cttttgaaaa tgaatgaaga agagaatata gtaagtagag      3660
     aaagagttag aataaaagat aaagaaaata tggagaataa tgcactatac gataaagaaa      3720
     gatttgacaa aaataaagcg aaaattattg cgtataacgt agatgatcac gttttattga      3780
     aaactgaaga gcgtcatcaa acaaaacttg atccaaagtt caagggtcca tttcaagtcg      3840
     taaaagtatt agatggagat cgatatgaat taaaatcatt agttaataag cgaacgtata      3900
     aatattcaca tgagtttcta agagcgctac caaatagaca gttaatcagc gaattaacag      3960
     gagaattgca gaataatgat gaaccccaag agggggtaga gcctgcggtt ggcacaagtg      4020
     aatgtgcgtt tgtgtcccaa gaggggatag agcatgaaga cggcacaagt gaaggtgcgt      4080
     ctgtgtccca agaggggaaa gagtatgagg atgacacaag tgaatgtgca tctgtgtccc      4140
     aaggaggaaa atgttgatca cagtatggca gctgtctcgc agggtcgagc agtgctatgg      4200
     cggaggtctt ggtgacctgg tgcatgtatt tgcgtggcaa agttgaaaga agttaaatga      4260
     tgaatttaag ttatgtaaga tgaattgatt agaattaaga atggtttaag aaaagaagga      4320
     agaatgaaaa gtttatgtta aatgttagaa ttgtctatgg aaagcgactc ttgtagtttg      4380
     tagttgtaag agaatggtga tgaaaagaat caattaataa attaaatgta aggcttcaaa      4440
     tataaaaatc aacataaccg aggttttctt gacttgtttg gcaatttaaa aactcaacac      4500
     acagggatgt gtgataggtc aggaaggccg                                       4530
//
ID   Gypsy-1_DAn-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   AAPP01018967;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DAn_;
KW   Gypsy-1_DAn-LTR; Gypsy-1_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-349
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018967; Positions   17847   18195.
XX
SQ   Sequence 349 BP; 119 A; 53 C; 104 G; 73 T; 0 other;
     tgtcgggaaa cagtagaatt caaggacaga gacaagaaca gagttgtcgc gaagttctaa        60
     attcggggaa tatagaattc atgcgaaagg catagcagca gagacgatgg tagtctctgc       120
     tggtgagtaa ggtccgctca cgagttacca gaagtttaaa gggatgaaaa gagatgacga       180
     cagaggctaa gcttgagaga aggctaagag agagaaggtt gagagaaatg aatgagtcga       240
     gtgatggtaa cgaacgtgag cggaacttgc tgtgctgccg catcgatttt attaagtgac       300
     aatggaggaa actactggac atacaacagg aattacggct cttacttca                   349
//
ID   Gypsy-1_DAzt-I repbase;    DNA;    INV; 8763 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-8763
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 790-790 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..1464
FT                 /product="Gypsy-1_DAzt-I_1p"
FT                 /note="gag."
FT                 /translation="MRSRQWIHSLRKEELMQCANACGLRLEGSVDEMRKAF
FT                 KIWVEKHGTEPEFADVLERWETQTGRISPAARAEDKEGAYRTERPTLWKTP
FT                 SKFQEELIASLAVPLKVQTPSQLRATSGERPXGSEAXGQNARQSEYERTEE
FT                 DRRRPQEEAARQPRVNSAVVAKQVREWSFRFDGTEKPLEFLXQVEWSADMY
FT                 GLDVDQIPRAMPELLKGRALMWFLANNRQWQTWRSFVQSFQDYFLPRDYFE
FT                 KLRQEVRNRKQKWGESFKDYMVDMQTLMRPLKRTPEQQAEAIRENSVPDLR
FT                 IFIRPHRCHDLEEMMKLADEFEALERDRAEFQKESPSSRARAANPFTRTTT
FT                 TEVCRRCRDDPAPGFNQRPPITPSEHQVDTNVVGGYVLNPENACRRCGSNR
FT                 HWAQACTGRPLTFCWRCGKVGVPTWQCCKPAGNAPRPKPRRAVPGSRLEAP
FT                 SSEDTRERPTSA"
FT   CDS           1194..4829
FT                 /product="Gypsy-1_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="RAPSGHQCGGGICAEPRECLPPVWKQQALGPGLHRPA
FT                 VDVLLEMRQGGGADLAMLQARGKRAATQAAEGRARVAIGGPQLRRHSREAH
FT                 VGLIGGLTDEEVQLSAVVGIAGREWKATVDTGATSSFVSCELADRLRGGGV
FT                 ESRTRKRVRLADGHSQEVNSQLEVEVAFGNKAIAMTLLILPGVIDELVLGW
FT                 DFITAVGAEVTCAGHRVVIPARGRRNRRLEEKLSVAVLATDEAPEPASESI
FT                 PAACETRGTEDGSHSEKCKESTDDEFLGKVLEEFRKMKGVSQVAVHSITMK
FT                 DAEPVKQRYYPKNPKMQAEINQQVDELLKTGRIEPSRSPYSSPIVMVKKKT
FT                 GKWRLCVDFRQINAKSIKDAYPMPRIDYILDQLREARFISSLDLKDGYWQI
FT                 PLEESSRQYTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMMPH
FT                 AFAYQDDIIVIGRXREEHRRNLEEVFRRLKKANLRLNVDKCQFFRTELRYL
FT                 GHLVTGEGICTDPEKVAAIAELQPPTNVKELRQYLGVASWYRRFVDGFATL
FT                 VQPLSALLRKKAKWEWTPERQRAFEAVKSRLVADPVLACPDFSRRFVLQTD
FT                 ASDYGLGAILTQETEEGERVISYASRSLNAAEKNYSATEKECLAIVWAIRK
FT                 LKPYLEGYHFKVVTDHMALKWLNSIESPTGRIARWALELQQYDFEIAYRKG
FT                 QLNIVADALSRQPVTERCRRMNEEKAGSKPSTECSWMKKIKENMEKEPFKY
FT                 PDYVKEAGRIYRHIPHRAGDEEVASWKLCVPRDLRERVINENHSIPEAGHA
FT                 GCRKTATRIAARYYWPGMHRDVRRFVSRCDACMRFKPCQRQAAGKMLTQIP
FT                 EEPWATVCADFVGPLPRSKHGNAMLLVLVDRFSKWTELVPLRKATAEALTK
FT                 AFRERIVARFGVPKVVITDNGVQFTSRAFKKFLEXSGVRHQFTAPYTPQEN
FT                 PTERTNRTVKTMIAQFTEGNQRCWDEKWPELMLAVNSAVSEATGYSPAFIV
FT                 QGREPRLPNALYDEDTLGTGQETHTPDENATKLRELFQLVRRNLERAAQDR
FT                 ARHYNLRRRSWKPNIGEXVWAKKHHLSNAVEGFAAKLAPRYDGPYRVVDFP
FT                 SPVICRLKKEGDKQTRTAHIADLKPQAGEEVTEERRLRMATNERNRLHGVA
FT                 RRTRDEAGSNSKRTEADGGIDKDSEPAQEVSRRTREGADTTRRHASGSKLI
FT                 LH"
XX
SQ   Sequence 8763 BP; 2269 A; 2188 C; 3080 G; 1201 T; 25 other;
     actggcgccc aacgtggggc ctcaagacaa gcaagaaaag gagagtgcat tgggaaagac        60
     ggtgctgagc ggtgtatcaa gaagggtatc gagatgagga gccgtcagtg gattcactcg       120
     ctgaggaagg aggagctgat gcagtgcgcc aacgcatgcg ggcttcggct ggaaggctca       180
     gtggatgaga tgcgaaaggc attcaaaatc tgggtcgaga agcatgggac ggaaccagag       240
     tttgccgacg tgttagagag gtgggaaacc caaacgggca ggatctcgcc agcggcgcgg       300
     gctgaggaca aggaaggcgc gtaccgcaca gagcggccga cgctatggaa gacgccgtca       360
     aagttccaag aagaactgat agcgagcctg gcggtcccac taaaggtcca aacacccagt       420
     caactgmggg ccactagtgg ggagagaccg gmcgggtcgg aagcccsggg acaaaacgcg       480
     cgtcaatcgg agtatgagag gacggaggag gatcgacgaa ggccccagga agaggccgcg       540
     aggcagccac gcgttaattc ggccgtcgtg gccaagcaag taagagagtg gtcatttcgg       600
     ttcgacggga cggaaaagcc gctcgagttc ctggmgcagg tggaatggtc agccgacatg       660
     tacgggctgg atgtggacca gataccgagg gcgatgccag aactgctaaa ggggcgwgcg       720
     ctgatgtggt tcctcgckaa caacaggcag tggcagacgt ggaggtcgtt cgtccaaagc       780
     ttccaggact acttcttacc aagggactac ttcgaaaagt tgcgccaaga ggtgaggaat       840
     cgcaagcaga aatggggaga gtccttcaag gactacatgg tggacatgca gaccctcatg       900
     cgtcccctca agcgcactcc ggagcagcaa gccgaggcga tccgggagaa tagcgtgccg       960
     gatttgcgga tttttattcg gccacaccga tgtcacgatc tggaggagat gatgaaacta      1020
     gcggacgaat tcgaagccct ggaaagggat cgggcggaat ttcaaaagga aagcccgtcg      1080
     agccgggcca gggcagccaa tcccttcacg cgaacgacta cgacggaagt gtgccgtcgg      1140
     tgtagagacg acccggcacc cggtttcaac cagaggccgc cgataacgcc tagcgagcac      1200
     caagtggaca ccaatgtggt ggggggatat gtgctgaacc ccgagaatgc ttgccgccgg      1260
     tgtggaagca acaggcactg ggcccaggcc tgcacaggcc ggccgttgac gttctgctgg      1320
     agatgcggca aggtgggggt gccgacctgg caatgctgca agcccgcggg aaacgcgccg      1380
     cgacccaagc cgcggagggc cgtgccaggg tcgcgattgg aggcccccag ctccgaagac      1440
     actcgagaga ggcccacgtc ggcctaatcg gtggcctgac cgatgaggaa gtgcagctgt      1500
     ccgccgtggt aggcatcgca gggcgagagt ggaaggccac ggtggacaca ggagcgacga      1560
     gtagttttgt cagctgcgaa ttggcagaca ggctacgggg aggtggagta gagtcacgga      1620
     ctcgcaagag ggtgcgactg gcggacggtc atagccagga ggtgaactcg caactcgagg      1680
     tagaggtggc gttcggtaac aaggcgatcg caatgactct cctcatattg cccggagtga      1740
     ttgacgagct ggttctgggg tgggatttta taaccgcagt cggagcagag gtgacctgtg      1800
     cggggcacag ggtggtgatc cctgcgagag gtcgacggaa taggcggtta gaggagaagt      1860
     tgtcagtggc ggtactagcc acggatgaag ccccagagcc ggcaagcgag tcaatcccag      1920
     cggcctgcga aacgagaggc acggaggacg gcagccacag cgagaagtgc aaggagtcga      1980
     cggacgacga gtttttgggc aaggtactgg aggaatttcg aaaaatgaag ggagtgtccc      2040
     aggtagcggt tcattccatc accatgaagg acgctgagcc ggtcaaacag cggtactatc      2100
     ccaaaaaccc caagatgcaa gccgaaatca accaacaggt ggacgagctg ttgaaaacgg      2160
     gccgcattga accgtcgagg agcccgtaca gctcgcccat cgtgatggtt aaaaagaaga      2220
     cgggaaaatg gaggttgtgc gtagatttcc gccaaataaa cgcaaaatcg attaaggacg      2280
     cgtatccgat gccaagaata gactacattc tggaccagct cagagaggcg cggttcatca      2340
     gcagtctgga cctaaaggac ggatattggc agattccact ggaagaaagt agccggcagt      2400
     ataccgcctt cacggtgcca ggcaaagggc tgttccagtg gaaggtgatg ccgttcgggc      2460
     tgcactcggc gtcggcaacg ttccagaggg cgttggacca agtgatcggg ccagaaatga      2520
     tgcctcacgc gttcgcctac caagacgata tcatagtcat cgggcgawcg agggaggaac      2580
     atcggcggaa tctggaggag gtgttccgga gactcaaaaa ggccaacctg cgcctgaatg      2640
     tggacaaatg ccaattcttc cgtacggagc tacggtatct gggccacctg gtgacaggag      2700
     agggcatatg caccgatccc gagaaagtgg cggccattgc ggagcttcag ccgccgacta      2760
     atgttaagga gttgcggcag tatttaggcg tagcctcatg gtatcgccga ttcgtggacg      2820
     ggtttgccac tctagtacag cctctcagcg cgttacttag aaagaaggct aagtgggagt      2880
     ggacgcccga aaggcagcgg gcatttgagg ccgtgaagag ccggctggtg gcggacccmg      2940
     tkttggcctg cccagatttc tccaggagat tcgtactcca gacggacgcc agcgattacg      3000
     gattgggggc tatcctgacg caggagaccg aggaaggaga gagagtcatc tcatatgcca      3060
     gccggtctct gaatgccgcg gaaaagaact attcagcgac ggagaaagag tgcctggcga      3120
     tcgtatgggc tatccgaaaa ctgaagccgt atttggaagg atatcacttc aaggtggtca      3180
     ccgaccacat ggcattaaag tggttgaaca gcatagagag ccccaccgga aggatcgcga      3240
     gatgggcgct ggaactccag cagtacgatt tcgagatcgc ctacagaaag gggcagctga      3300
     acatcgtggc ggacgcacta tcccggcagc cggtgacgga gcgctgccgg agaatgaacg      3360
     aggaaaaggc cggctcgaag ccgagtaccg agtgctcgtg gatgaagaag ataaaggaga      3420
     acatggaaaa ggagccgttc aagtatcccg actacgtcaa ggaggcaggc cggatatacc      3480
     gacacatacc ccaccgagcg ggagacgaag aggtggcatc gtggaagctt tgcgtcccaa      3540
     gggacctccg ggagcgggtc atcaacgaaa accacagcat tccagaggct gggcacgcgg      3600
     gatgccggaa gactgccacg agaatagcgg ccagatatta ctggcccggg atgcaccgcg      3660
     acgtaaggag attcgtgtcg aggtgcgacg cttgcatgcg tttcaaaccg tgtcagcgcc      3720
     aggcggccgg caaaatgctg acgcagattc ccgaagagcc gtgggcaacg gtttgtgcag      3780
     atttcgtggg accattacca aggtcaaagc atggaaacgc catgctcttg gtactggtcg      3840
     atcggttttc gaaatggacc gagttggtgc cgttgagaaa ggccacggca gaagcattaa      3900
     cgaaggcttt ccgggagagg attgtggccc ggttcggggt gccgaaggtg gtgatcaccg      3960
     acaatggggt tcagtttacc agcagggcat tcaaaaaatt cctggaacam agcggggtgc      4020
     ggcaccagtt cacggcaccg tacaccccgc aggagaaccc aacggagaga accaaccgga      4080
     cggtgaagac catgatagcc caattcaccg aagggaacca gaggtgctgg gatgagaagt      4140
     ggccggagtt aatgttggcg gtaaactcgg cggtgtcgga agcaactgga tactcgccag      4200
     cgttcatcgt gcaaggaaga gagccgaggc tgccgaacgc gttgtacgac gaggatacgc      4260
     tcggcactgg gcaggaaacc cacacaccag acgaaaacgc gaccaagttg cgggagcttt      4320
     tccaattggt gcgacgcaac ttggagcggg cggcccagga tcgagcaagg cattataact      4380
     tgcgaagaag atcatggaaa cctaacatag gagagwtggt gtgggccaaa aagcaccatt      4440
     tgtccaacgc agtggagggt ttcgcggcga agctggcgcc aaggtacgat gggccatatc      4500
     gagtggtgga ttttccctcg ccggtgatat gcaggttgaa aaaggagggc gataagcaga      4560
     cacggacagc ccacatcgcc gacttgaagc cgcaggcggg ggaagaggtc acagaggagc      4620
     gaaggctgag aatggccacc aacgagagga accggcttca cggtgtggca cgcaggacac      4680
     gggatgaagc tgggagcaac tcgaaaagga cagaggcgga tggaggaatc gataaggata      4740
     gtgaaccggc ccaggaggtg tcacgcagga cacgggaggg cgccgacacc accaggagac      4800
     atgcaagcgg aagtaaatta atactacatt aagactaaaa gtaatactac gaggagacag      4860
     gtccgggttg gaacacgcta agggccaacg gcggtgaggt gcctgaagaa aaaaaaggaa      4920
     aacacgagtt aatgaagttc caacggaaga taatacgtac cgggccgaaa gtgcaccagg      4980
     cgggcccggg cgggaagatg tcccggcgam cgggtggggt ggwgaagacg agtcggagga      5040
     acaagagtga ggtcccggtt cgtggtccag ggtccgctgg tcwgataacc gtcgggttcg      5100
     gccgggcaga aggctcgccc atgcgctgtt tgtcggccga ggggtcggat gaccctcggg      5160
     tccggggcgg ctggatgggg cggaagtcac gccagaagcc gaaccggagg ccgggagaag      5220
     aaggcgaccc agggtcgtac cgccggttgc atccgggcgg aaggtcggtt gatctcgtag      5280
     ccaggggcaa tttcggtggg cgacatccag gaccggggac gcgggacggg ctggaagatg      5340
     ggccgaaatt attaggaaga ctcagatckg gatactcacc tgggatgccg tggggggtcg      5400
     gctcgcccgg gaccggcgct gcgtatggaa gacactggga ataaaaaaaa aaaagattaa      5460
     atataaaaaa aaaaaaagaa aaaaaaaaaa atatgtatat aaaaaaataa ataaaaaagg      5520
     taatatatat taaataaata aataaactaa gtaataataa ataaaaaaaa aaaaaaaaaa      5580
     aaaaaaaaaa aaaggtaggg matacgatgt gcgacatgag caggcacaat cggcgaacga      5640
     aagagaggaa agcaacggga tcacgagaga gaaaccagag ggaagtaccg tacggtggaa      5700
     cgatgggaac cgcggaagaa aaaaaaggag ggctgttggt ggaagatcag tggaacctac      5760
     gatcactttg tcgccacagc agcaaaggaa cagacgtgga aaaaaaattt gtgcaaggtg      5820
     aamatgcagc agttgttaaa aaaatatttg gaggagcagg ccagggaggt ggaggcccga      5880
     gctcaccgcc agcgacgggc ggagctctcg cggggagagc ggtgggttcg gagcgagacg      5940
     ccggagctgg agataatggc atcgccactc gkgaggtcac cccggtcccc gcgggccacg      6000
     cggacgccgg agatctcgcc cggagggacg gagtccgagg acagcgacga ggtcgtgktg      6060
     gtggctgtca ccccggcgcc ctcgagcgca gagctcagac ggctggcggc aatgccgagg      6120
     ccgtcgtcgt cgaagctggt ggaggcggcg ccgaagccag cggacacggc ggcccggcca      6180
     gcggcgaagc cagcgacggc atcccggtcg gcggaggccg agtggacgcc acaggagcgg      6240
     gaggaggaga aaaggtacct ccggagcgcg ctggagatcc tcgtmcggga gcggagggaa      6300
     cagcggcgga aggaagcgag gcgtcgggag gagcagcaca gggaagagga gacgcggcga      6360
     gcagaggagg cgcgtcggga ggaagaggag aagagacggc aacgacggaa ggaggacgag      6420
     cggcggcggg aggaagaccg cgagcgcaga agggctcgga aggccagcga ggagaaggcc      6480
     cggcaccagg ctcgcgagca tcgccgaggt cgggaggagg agcagctccg agaaggcaag      6540
     gcgcgagccg ggagcgaggg cgtgaggctg cagcmgccaa aggctccgcg ggggaaggcg      6600
     ccaaaggtgc taggcggagg cgagcagccg cggcagcagc cgccgtcaac acagccgcag      6660
     cagcagccgc cgtcaacaca gccgcagcag cagccgccgt cgacgcagcc gcagccaccg      6720
     ctgccgccga cgacacagcc accgtcgacg cagccgcagc cgcagccacc gccgccgccg      6780
     acgacacmgc caccgtcgac gcagccgcag ccaccgctgc cgccgacgac acagccaccg      6840
     tcgacgcagc cgcagccacc gctgccgccg acgacacagc caccgtcgac accgccgcag      6900
     ccaccgccgt cgtcggcgta tcagccggag gagccgactg gcgaggagga ggccccacca      6960
     ccaccgaggt ggcgggtgag ggcgtcagag gaactgctca gtggcgagag gcagcagccg      7020
     catgccccgt cgcaaacgca ggcgcagcct cagccgccgc cacagcctca gtcgcagccg      7080
     cagcctcagc cgccgccaca gcctcagtcg cagccgcagc cgcagcggga agaggctcag      7140
     ccgccgccac agtcagcgcc ggagcagcca cgggacacgg agccgcagcc ccagtggcag      7200
     gggcccgaga gtgcggtctg cggaccgttt gtgtcacaaa gtgtgcacac ggcggtccgc      7260
     gacgggatgg tgtggcacca ccagaccatc cacattacgt gggcgtccgg acccgcgccg      7320
     cgcgaggccg aggagccccg attgtgggaa gaggagccgc caagaggcag caacgagcgc      7380
     gatccgagga agcggggagg aggascagca gcagcaccgg aggaaccagt gccccggcag      7440
     gacgggccag ggacagcccc ggaagcgaca ccagaggggg tgagttcggc cgaggagcca      7500
     gtagcggtgc cggcgatgcc ctcggaggag gaggaggtgg agcgcggccc atgggtgtgg      7560
     cctacgcctg aaatggcgca ggaacggacg acgccagaag ggaagagctc ggccgaggag      7620
     ccggtcgmgg tgccagcaac ggagacgccc atggaggagg aggagctgga gcgcggccca      7680
     tgggtgtggc ctgcaccgga cagggcgcag gaacgaccgg gcctggcaag gcaggcctcc      7740
     tgtccggaag caaggagtgg ggkcggacgg ccacggctcc agcggcagca ttcgatgccc      7800
     gaagggcggc cggcagagcc acagcgctgg cggcgggtgg cgctgcggaa tggcctgaag      7860
     ctgtggtgcg ggccgtggag gacacccgtc caatagggcg acgggtgaag cggctcgtgc      7920
     gcgtgcgggg ggtgcgctac cgtgtgtcgg tggcggaagg caacgcggag gtcttcgtgg      7980
     aggggcgagg gtgtgaagat ggcccagtaa taaagagtga gaaacgagaa agtaaataca      8040
     aaaagaatac ttacctgggg gggggggcgg tcacattggg gcgatgaggc agaccgccgg      8100
     taaaatataa aacgcggacc tcgactgggg tcttcgagat aaaggccggc tggaagaaaa      8160
     cacacgcgag cggcaacgcc gaggtgatca gagaggcgtg aatgggacta aggaaaaagg      8220
     aagaagaaga aacatgaatg aaaacgtgaa gtatgaagaa aacgtggtaa cttacctggg      8280
     taggtggtgg gccgccttgc gtggggtgaa ggcagtccgc cgtgagagtg gaaagcgcgg      8340
     tccacacctg gattggaggg gcaagtgccg gtggcaaacg aaaaaaaaga cacaaaaaca      8400
     aaaacacacg cgggcggcag aaatttacgc gagataccgg cggaaaccaa tcgtgagtcg      8460
     tgagcgcacc tatcgtgcgc gcacctatcg tacgcgcacc tatcgtgcgc gcacctgttg      8520
     tgcgcggcac gatcggaact ggttccagag ccctttcgac acaaagtatc gataggccag      8580
     taacgccatc cgcgggaatt cgcgagcgat ggaaccagcc gaaaacacca acagagggag      8640
     ccacgagagg ggccgttaaa atgagaggca ggccgaaggt gaaagaacag ggccgacggg      8700
     ctcccggagg gggattctct ggccggtggt atccggggtg tgaagagtga aggaaggggg      8760
     aag                                                                    8763
//
ID   Gypsy-1_DAzt-LTR repbase;    DNA;    INV; 1101 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1101
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 805-805 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1101 BP; 303 A; 276 C; 350 G; 168 T; 4 other;
     tgtgaggaat caatattcct cacaagaccc tagtagggga tggggcgaat tggccgcgaa        60
     gagcgcaagg caatcccgct acmtgagmag atggagcggg ccacgcccca gaggccggga       120
     acggcggaat ggggccagca gcgggccgaa ggtccgagtc cctagagtca ggccatgtag       180
     atccccatgt aggccatgta ggccatgtac tcccatgtag gccatgtaca tcccagtagg       240
     ccatgtagat cccatgtagg ccatgtagat cctcatgtag gccakgkaga tgccatgtag       300
     gcagatcccg gtgcggaagg cttggggaag acgaagccgt tgatggaaaa gtacccgggg       360
     aaaggaaccg ttgcagatgg gcagcgacgc ggcgaaccat gtagatccca tgtaggccga       420
     tcccggtgcg gaaggcttgg gggaagacga agccgttgat ggaaaagtac caagggaaag       480
     gaaccgttgc aaatgggcag cgacgcggac gctgggccaa aaggagccta taagaggagg       540
     tccgcggcag tcagagggac agtcaggcgc gggagctaag aacgcagcaa ggaaagtagt       600
     gacaagtgtg aaccagtacc cgagaaacca ggaggagcaa cgaccaacag agtcgaaaga       660
     cggaatccga cggagaggtg cacgacgggc agcgacaaca gactcgccgc gtaaaggtga       720
     gaccagtggc caggtgaacc cattgtgtgc ggagctgtgt gcgaggcgga cgaggcggtt       780
     gccgagtcag aacccccata gccatagccc aacggtgcta cacctgaggt caacctcagc       840
     aacggtcgag tcgtgaaccg cgcccggtgg cacccggaga cctctacacg gcggtgagag       900
     gttgccgaat cgttaagtgt ctagaagtac catagccata aggtagccgt aagatacaca       960
     ataaagaaca attactcagc caatacgtat cccagtgcat ttacttgctt gtcgccgagg      1020
     caacaaataa attcgttgca tcgatccacc gaccgctgag ccagctctgc tgaatcagac      1080
     ggacaaaaac ggttcgttac a                                                1101
//
ID   Gypsy-1_DBi-I repbase;    DNA;    INV; 5451 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DBi_;
KW   Gypsy-1_DBi-LTR; Gypsy-1_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5451
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 821-821 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4673-5161] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2317..3429
FT                 /product="Gypsy-1_DBi-I_1p"
FT                 /translation="MNVATGKELVFLLDTGAEISILKENSDNFQNIQDNHI
FT                 INIQGISHEVTKSKGLTSIEIQTSKYIIPHDFHIVNMQFAIPCDGILGIDF
FT                 IKRYNCQLDFKQSEDWLIIRPNNLKYPIYVPIAYSSGNNSLILPARSQVVR
FT                 KIEINSEEDSVLIPNQEIQHGIYIANTIATVQNAYIRLLNTTNTDQVVYIK
FT                 NIHHEPLSNYEVVKTDLETRQKIVLSQLAKNFPPQFNEQLTALCTQYSDVF
FT                 GLETESITTNNFYKQKLRLTDDEPVYIKNYRNPHSQQDEIQKQVQKLINDK
FT                 IVEPSVSPYNSPLLLVPKKSLPNSENKKFTGYNILFNKQWFVSLHAITIRF
FT                 KNSAKLFSENDDYSFLWIRTFASISLYG"
FT   CDS           3374..5197
FT                 /product="Gypsy-1_DBi-I_3p"
FT                 /translation="MMTIAFSGLEPSQAFLYMDDLIVIGCSEKHMLKNLTD
FT                 VFEKCRQHNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPV
FT                 PHDADSARRFIAFCNYYRRFIKNFAEYSRHITRLCKKDVKFEWTTECQNAF
FT                 EHLKSALINPTLLQYPDFSKEFCIITDASKYACGAVLTQNKNGLQLPVAYA
FT                 SRSFTKGESNKSTTEQELAAIHWAITHFRPYIYGRHFTVKTDHRALTYAGK
FT                 EQIELHKQPIEKASKPNVYEVINNDEVRKVVTLHVNNKMCLFKHGKKITAR
FT                 YDVSDLYTNGTIDLGQFFQRLEKQAGIHKVSQLKVAPWENIFEHVSIDNFK
FT                 IMGNNILKSLRVALLNPVTVIKNNKEKEAILSTFHDDPIQGGHTGITKTLA
FT                 KVQRHYYWKNMSKDIKEYIKKCPKCQKSKTTKHTKTPLTITETPQRAFDIV
FT                 IVDTIGPLPKSNNGNEYAVTLICDLTKYLVAIPIPNKSANTVAKAIFEDFI
FT                 LKYGPMKTFITDMGTEYKNSIIEDLCKYLHIKNITSTAHHHQTVGTVERSH
FT                 RTLNEFIRSYISVDKTDWDVWLRYFVYCFNTTPSMAHDYCPYELVFGKISN
FT                 LPKHFNSKIK"
XX
SQ   Sequence 5451 BP; 2170 A; 1071 C; 894 G; 1316 T; 0 other;
     tggcgaccgt gacaggactc aggatgtaaa cttgaaaaac atcgaggaca tcgaaggacc        60
     gcaagagaaa aaaccagaag aaggacggaa acacaaaaat tatagcagca gacaacgaaa       120
     aataaaaatc gcagtgagta gagtgtgatg tgtgctaaac gcagtggtgt ggtaaaaaga       180
     ttaaaagcca gaagggctga attactgaag ctactaaata gcggaagtaa attagattgg       240
     aacaattcgg taaaactaca tgccgaactt gaacatataa aaaatttatt aagtgaaaga       300
     aaaaatcaaa ccacagccac acacacatcc acctaccctg caattaaaag tctcgctaaa       360
     gctaatatca aattacctcc gccacagaag aaggaaatac ccaagttaat gaagaagtgc       420
     ccaaacgact gcgagggacc actgtgctcg ccccattgcg agtacacctg tgcagccagc       480
     accggtgccc cagcatagaa gagcatcgag gaagtccagc ctgtgcagcc agcaccggcc       540
     acgtcttgcc aatcaagcga gaccaaggag aagtgagccg acagcgcttc atacattttt       600
     tatttaacca tgcgttgcat atttttttca ttgcactgcg atgcatattt ttttttatat       660
     atataaaaac taatgtaaaa ttgagcggcc aatagcgtgt ggcctgaaaa ccatacaaaa       720
     actaggcagg tttttccatt tttttctcac aatacctacg gcccaataag gcaaattttt       780
     aattacatga gccaaactaa atggcaaata aattataaat taaattacac tttcaacata       840
     aaaaatccta aatcagctca tagaaaaaca cgaaaaatgg gttatgtaga cgtaaaagaa       900
     gtggactcca cagcaaacgt tataaataaa atcgagtcca aaacaataaa taccagcaca       960
     gcaaaacact gtaaacaagc atgccgaaat attagtaaac cgcttcaata cagcgcggat      1020
     actaatacac gatcagagag acaggctaaa caaagcccat tggtctcagg tatcaaaata      1080
     tttaaacaaa ttacgggata acctaatagc tataaagcaa aggtacgact taacaatttc      1140
     agtaccaact atcctaaaca caccgttgaa gatagaaact agagaagagt cagaatcatc      1200
     agatccacca gtacaagctg aggctgacga ccctatctct gcagatcccg atatagagga      1260
     aaaagatata aacaacctca ctattccggc agtccttatt caatctgaat tatcagacca      1320
     ggacttgacc gactcggatt ctaacaacag cattgtagaa ataaaaccaa ccacaatggc      1380
     tgaggagata attgcccaaa gggcatacat taaagaaata tcgaatgcca tccccgagtt      1440
     taacgggcaa aggatacacc ttcaaagatt cataacagct ttgaagttgg ttaaccttac      1500
     gaaaggtaca ttcgaggttt tggctgtaga agtcatcaaa tccaaaataa ttggatcgac      1560
     attatacaga gtccaaaacg aaacgacaat agaagccata attaaaaaac tgcaagatac      1620
     tatagtcgga gaaacatccg acgtagttaa agccaaaatg gcaaaaacaa gccaaaaagg      1680
     taaaactgca gaaaaattca ccacagaaat tgacaaccta cgaaagctcc tagaagcttc      1740
     gtatattgat gaaggcctat cggccgaaca cgctgacaaa ttcagcacca aggaagccat      1800
     caccacaatg gtcaaaaatt gtgagcatgg ccgcctcaaa acaatattgg aagcaggcaa      1860
     ttttgcaacc atgaatgaag ccgtcgccaa gtacatacaa agtagtactg aaatgacagg      1920
     caatgccaat tccatattgt acacccaacg tggaaataat tatcgcggca ataattataa      1980
     aaacaattat cgcggtagag gtaataatcg aggtaattat aacaatacca gatattatca      2040
     gaataacgga tataatcaaa acaatggtta taacagaaat aacaataacc aaaataacaa      2100
     ttattacaga aacaacaacc gtggtggaaa caaccgcggc ggaaacagcc gtggggaaca      2160
     caacaacggt aatggtagta acaacaacaa ccacaataac aacgttaggg tagcccaaac      2220
     aaattcggga aactcccaaa cacctttaga tacacgacag taaacaacat caaaattcac      2280
     actttaaatc tcagtcaaaa tacattcgtc actttcatga acgtagcaac aggaaaagaa      2340
     ttagtttttc tactagatac aggtgcggaa atatccatat tgaaggaaaa ttccgataat      2400
     tttcaaaaca ttcaagataa tcacatcata aacatacagg gtataagtca tgaagttacc      2460
     aaatcaaaag gcttaacttc tattgaaatt caaacttcta agtacataat tccacatgat      2520
     ttccatatcg taaatatgca attcgctatt ccatgtgatg gaatactagg aatcgatttt      2580
     atcaaaagat acaactgtca attagacttc aagcagtctg aagactggct tataataaga      2640
     ccaaataacc tcaaatatcc gatttatgtt ccaatagcat acagttctgg caacaactcc      2700
     ctaattctgc cagcaagatc ccaagtcgtc cgaaaaatcg aaataaattc agaagaagac      2760
     agtgtattaa ttccgaatca agaaattcag catggtatct atatcgcaaa taccatagca      2820
     acagtccaaa atgcatatat aagattacta aataccacaa acacagatca agtagtttat      2880
     atcaaaaata ttcatcatga accactttca aactacgaag tagtaaaaac ggacttagaa      2940
     accagacaaa aaattgtatt atcccaactt gcaaaaaact tcccgcctca attcaatgaa      3000
     caacttacag cattatgcac ccagtatagt gatgtattcg gactagaaac cgaatcaatc      3060
     actaccaata atttttataa acaaaagctg agattaactg atgatgaacc cgtatatata      3120
     aaaaattata gaaatcctca tagtcaacaa gacgaaattc aaaaacaagt ccaaaaactc      3180
     atcaatgata aaatagtgga accctctgta tcaccttata atagcccact tttgttagta      3240
     ccaaaaaagt cacttccaaa ttcggaaaat aaaaaattca cgggatataa catccttttc      3300
     aacaaacaat ggttcgtatc gcttcacgcg attaccattc ggtttaaaaa tagcgccaaa      3360
     ctcttttcag agaatgatga ctatagcttt ctctggatta gaaccttcgc aagcatttct      3420
     ttatatggat gacttaatag tcattggttg ttccgaaaaa catatgctca agaacttaac      3480
     tgatgttttc gagaaatgta ggcaacacaa cctaaagtta caccctgaaa aatgttcatt      3540
     tttcatgcat gaagtcactt tcttaggaca taaatgcaca gataaaggaa tcttgcccga      3600
     cgacaaaaaa tacgacgtca ttcaaaatta tccagtccca catgatgcgg acagcgctag      3660
     aagattcatt gcattttgca attattacag acgctttata aagaattttg ctgaatactc      3720
     ccgtcacata acaagattat gtaagaaaga tgtaaaattc gaatggacaa cagaatgtca      3780
     aaacgccttc gaacatctta aatcagcatt aataaaccct actctgttgc aatacccaga      3840
     ttttagcaaa gaattttgca taataacaga tgctagcaaa tacgcttgtg gagcagtcct      3900
     aactcaaaac aaaaatggac tacagcttcc agttgcatac gcatcaagat cctttacgaa      3960
     aggtgaaagc aacaagagca ctacagaaca agaattagca gctattcatt gggcaataac      4020
     acacttcaga ccatatattt atggtagaca cttcactgtc aaaacagacc acagagcact      4080
     tacatacgca ggaaaagaac aaatagaatt gcataagcaa cctatagaaa aagcttcaaa      4140
     gcccaacgta tatgaagtca ttaataatga tgaagtacgt aaagtagtga ccttgcatgt      4200
     aaataataaa atgtgtttat ttaagcacgg aaagaaaatt acagcaagat atgatgttag      4260
     cgatttgtat actaatggaa ccattgactt aggtcaattc tttcaaaggc ttgaaaagca      4320
     ggccggtatt cacaaagtca gccaactcaa agtggcaccg tgggaaaata tctttgaaca      4380
     tgtttcaatt gataatttta aaattatggg caataatata ttgaaatcat tgagagtagc      4440
     gctactcaac ccggtgaccg taataaaaaa taataaagaa aaagaagcta tattgtctac      4500
     attccatgat gatccaatac aaggtggtca tacaggcatt acaaaaacct tggccaaggt      4560
     ccagagacac tattactgga aaaatatgtc caaagacata aaagagtaca taaagaaatg      4620
     tcctaaatgc caaaagtcga aaacgactaa acatactaag accccactaa ctataaccga      4680
     aactccacaa agagctttcg atatagtaat tgtagatact attggtccac ttccaaaatc      4740
     taataatgga aacgaatacg cagtaacact catctgcgat ttaactaaat acctagtagc      4800
     tatacctata ccaaataaaa gtgcaaatac agtagcaaaa gctatatttg aagattttat      4860
     tctaaagtac ggtccaatga agacgttcat tacggacatg ggaacagaat ataaaaattc      4920
     aattattgaa gatctatgta aatatttaca tattaaaaac ataacttcaa ctgcacacca      4980
     ccaccagaca gtaggtaccg tggagcgaag ccacagaaca ctcaatgagt tcattcgttc      5040
     atacatctca gttgacaaaa cagattggga tgtatggctg cgatacttcg tatattgttt      5100
     taatacaacc ccatctatgg cacatgacta ttgtccatat gagctagttt ttggtaaaat      5160
     ttcaaatcta ccaaaacatt ttaatagcaa gattaaataa aaccccttta taatatagaa      5220
     gactatgcta aggaatccaa atttagatta gaacaggcat ttaagagagt agactaatgc      5280
     tagaattcat aagctaaaac agaaaattag ttacgaaaaa ttagtaaaca aaaagaaaaa      5340
     tcaacaaaaa aaaattatta ttgctataag taatatcatt ttttgtaaaa tgaatactag      5400
     aaaataactc cattatatta cgttattttt caaaaggagg gagatgtagc a               5451
//
ID   Gypsy-1_DBi-LTR repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DBi_;
KW   Gypsy-1_DBi-I; Gypsy-1_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-503
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 822-822 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 503 BP; 156 A; 126 C; 106 G; 115 T; 0 other;
     tgcacacata taaaatatat gtatcgacca cccactgtac caagagtact aaaaggggca        60
     cgcactgtaa cactttgtcg cagtgtttat acaattcagg gtctcggtca tcaacctaag       120
     tgcccgaaat acgaaccgct cgctgtgcct tggcccgcag gctgaaagtg caagtgtcag       180
     cataattgca acacgagcgg acctcatgta tgtgcatata cctccgcgct ccagactaag       240
     tgagcatagc tatatactta agaatacata ggccgtctct ccgctgccgc tgttggcagc       300
     gccgctacga gacttagacc tctttagctc ctaagcaaat tggggatcga gaagaacctc       360
     cttcgagctc ggagcggcaa caacggctgc tccgaaacca tcaatacatt tgtaaaacca       420
     atgaacaaaa attaaataaa gaatgagaac aattaaaacg atgaacctat cttcttcatt       480
     ggcggagcgg gataattatt aca                                               503
//
ID   Gypsy-1_DBp-I repbase;    DNA;    INV; 4611 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DBp_;
KW   Gypsy-1_DBp-LTR; Gypsy-1_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4611
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 653-653 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3657-4118] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           663..4610
FT                 /product="Gypsy-1_DBp-I_1p"
FT                 /translation="MAENYLKPFLCEAIEKSVLRNEWEKRFRAFTISMEAE
FT                 QIVSPKMKRTKLLHVGGVQLQAVAFSLPGALVEDDKDGEIDVFTVLVEKLN
FT                 AYFSPKQNSTFERRLFRSISPHESENFSKFILRLRQQMYKCSFGQSKVEIE
FT                 EICLKDKIIDSWAPLELKKKLLGKEYSLDEVIEACQVEEQISKQSEAMLTK
FT                 PITSDSINKITARKIRPNLECSRCGRMGHANSDFSCPARAAKCNKCSKIGH
FT                 FARQCRTTQYAQPKHENRKRRRNDIRRVEDESADPKRKKECANCFKIYSDE
FT                 EEELINCQIGGHNIALIIDSGSKFNLISQSDWARINKEPTAIFNIRSHSQK
FT                 QFRGYASEQLLEVIYVFEAPISAVPNVEVIATFFVIKNGRQSLLGRETAIK
FT                 LNVLRLGLDVNRVEMTTPFPKWKGVKIKLWIDPQVIPVQQPVRRIPVALEE
FT                 KVAAKLEESLSRDIIESVTGPSSWISPIVLAFKENGDIRLCIDMRRANKAI
FT                 RRENYPLPTFESFMPKLKDAKYFSRLDLKDAYHQLELDEASREITTFITPK
FT                 GLFRYKRLMFGINSAPEIFQRHLEQLLAPFTNVMNYIDDVIIFGASEEEHD
FT                 KTVREVCNTFKESGVLLNDQKCIWKTNKLKFLGHIISDEGIEVDPDKINVI
FT                 RMFREPLNKEETRSFLGLVTYVGKFIPDLADYTDPLRKLLRKDSKFSWGET
FT                 ERDAFRNLKDRLEKVPNLAYFNPLNRTRLIADASPVALGAVLLQFSVNADP
FT                 LIISFASKALSDVERRYSQTEKESLALVWAVEKFYFYLAGLHFELVTDHKP
FT                 LEAIFKPTSRPPARIERWLLRLQSFDFKVVYKAGKENISDALSRLCPLSAS
FT                 DSGEKEMDCSILQVIENSIPQSMTISEIAKHSVKDEEIIDAKACLECDSWK
FT                 PGSLKLLYPFRFELSAIGPLLLRGNRIVIPQSLRNQVLELAHEGHPGESAM
FT                 KRRLRSKVWWPLIDRDAENYVKHCRDCLLVSQCPRPAPMDRNPFPTGPWIW
FT                 VASDILGPLPNNEFVVVFIDYYSRYMEFKFLRSISTKSLIEVMKEIFCRLG
FT                 YPKYLKTDNGRQYISQEFEEYCKTCGIEQVKTPPYWPQANGEVENMNRSLV
FT                 KRLKIAHSNSKNYKEEIQKFVLMHNVTPHGTTGVAPTQLMFNRVIRDKVPC
FT                 IGDIDEEVSDSAERDRDCMLKEKGKEEADKKRGAREAVINVGDKVLLKNVV
FT                 FPSKLTPNFKDTEFEVVEKDRNIVKIRAGGRTLTRNVSHLKKIPINASHPD
FT                 TSGDSSLSSPQPKMTSTQDHQDVEEGIGHRLRQSPEDLAPLAAPSLKLKLV
FT                 NKGG"
XX
SQ   Sequence 4611 BP; 1529 A; 903 C; 1056 G; 1123 T; 0 other;
     ttggcgacga ggtaaaactg tttttcaaaa atatatacaa gaaatagcaa taattaatct        60
     catttaaacg tacatacgta tgtatgtatg taaaacgaaa aactgcgtat ggcagtgcca       120
     tcccaaaaaa aaaaggggaa cggaaagaag aaccataatg tataacataa atgagattgg       180
     taattgttat acttgtaaag ttcagcgcaa aaccaaatta cgaaacataa gtaaaaagaa       240
     aaaaaaaaca ataaagagag gctgagtttt aaacaagcca gataacttaa gagaaattta       300
     ctctgaaaaa aaagggctga gtgaaagatt tacatttttg caagccgcat gtgtatgcat       360
     gtgtaactat gtatgtacgc aggtgaaaac gtgcatagga aaggctgtgc ggaagagttt       420
     tgttttccgt aagctgtata ataaatcgac tgcgtgtaaa tacaagtcga aagaggctgc       480
     gtgtaaacaa gcccaaaaga acaattttta gtaaaggctg tgcggaagag tttggtcttg       540
     cgtaagctag ataactataa aaaaaagaga ggctgcgtaa aaacaagccc agaatttcaa       600
     gtctaaaatg aaattttgtt tcgttgtcta aaatctagca aacacaaacg cacgacctca       660
     ggatggcgga aaattattta aaaccattcc tatgtgaagc aattgagaaa tcggtccttc       720
     gaaatgaatg ggagaaacgg tttagagcgt tcactatctc gatggaggct gaacagatcg       780
     tgtcacccaa aatgaagaga actaaactcc ttcacgtagg tggggtacaa ttgcaagctg       840
     tcgcgttctc gttaccgggt gcactggtag aggatgacaa ggacggggag atcgacgtct       900
     tcactgtttt ggtcgagaaa ttaaatgcct acttttcgcc gaaacaaaat tcaacgtttg       960
     aaaggcgtct atttcgaagt atatcaccac atgagtcaga gaatttctca aagtttattt      1020
     tacgactaag acaacaaatg tataaatgtt ctttcggcca atctaaagtg gagattgagg      1080
     aaatctgcct aaaagacaaa ataattgatt cgtgggcgcc gcttgagcta aagaagaaac      1140
     tcttgggtaa ggaatactcc ttggacgaag ttattgaagc gtgccaggtc gaggaacaaa      1200
     taagcaaaca atctgaagcc atgctgacga aacctatcac tagcgattca atcaataaaa      1260
     ttactgctcg gaaaataagg ccaaatctgg agtgttcgag atgtggtcga atggggcatg      1320
     caaatagcga tttctcctgt ccggcccgag cagctaaatg taacaaatgt tccaagatag      1380
     gtcattttgc acgacaatgc agaacaacac aatatgctca gccgaaacac gaaaatagga      1440
     agcgccgccg aaatgatatt cgtcgtgtgg aagatgagag cgctgatccc aaacggaaga      1500
     aggaatgtgc gaattgtttt aagatctaca gcgacgaaga agaagaactc ataaactgcc      1560
     aaataggggg tcacaacatt gctctcatta ttgactctgg atcgaaattt aaccttatta      1620
     gtcaatcaga ttgggcaagg attaacaagg aacctacagc aatcttcaac attagatcgc      1680
     attctcagaa acaatttcga ggatatgctt ctgaacaatt acttgaagta atttacgttt      1740
     ttgaagcgcc gatatcagct gtgccgaatg tcgaggtgat tgcaacattt ttcgtaatta      1800
     aaaatggacg gcagtcgcta ctgggccgag agaccgccat taagctgaac gttcttcggc      1860
     taggtctaga tgtcaatcga gtggaaatga ccacgccatt ccctaaatgg aaaggggtta      1920
     aaataaagct atggattgac ccccaagtca ttccagttca gcagccagtt cgaagaatcc      1980
     cggtggcact cgaggaaaaa gttgccgcta agctggaaga gagtttaagt cgggacatca      2040
     tcgaatcagt tacaggtccg agctcgtgga tatcccccat tgtcctggct tttaaggaaa      2100
     acggcgatat tcggctgtgc attgacatgc gtcgtgcgaa taaggccatt cgacgagaaa      2160
     attatccact accgaccttt gagtctttta tgcccaagct aaaggacgca aaatactttt      2220
     cgcgcttaga cctaaaagac gcttatcacc agctggaact ggacgaagcc agcagggaaa      2280
     ttacgacgtt cataacacca aaaggactct ttcggtacaa gcggctgatg ttcggaatta      2340
     actctgctcc agaaattttc caacgtcacc tcgagcagct attggcaccc tttactaatg      2400
     tcatgaatta tattgacgat gtaataatct ttggagctag cgaagaagaa catgacaaga      2460
     ctgtaagaga ggtttgtaac acatttaaag aaagcggcgt tttactaaac gatcagaagt      2520
     gcatctggaa aacaaacaaa ctcaagttcc ttggtcatat tatttctgac gagggaatcg      2580
     aagtggaccc ggataaaatt aatgtgatta gaatgtttcg agaaccactt aacaaggaag      2640
     agactcggag tttcctaggt ttggtgacat acgtgggaaa atttatccca gacctggcag      2700
     attacacgga tccgctgaga aaattactga ggaaggactc gaaattcagc tggggcgaaa      2760
     cagaaagaga tgcttttcgg aacttaaagg atcgactgga aaaagtacca aaccttgcat      2820
     acttcaaccc gctaaatcga actcgcctaa tagcagatgc cagtcctgta gcactgggag      2880
     cggtgctgtt gcagttctct gtaaatgcgg accccttaat tatttcattc gctagtaaag      2940
     ctttgtcgga cgttgagaga cgttattctc aaacggagaa agaaagtctg gctctagtct      3000
     gggctgttga gaaattttac ttttacttag caggacttca tttcgagcta gtgacagatc      3060
     acaaaccgtt ggaggccatt tttaaaccga catcgagacc tcctgcgcgc atagaaagat      3120
     ggttgctacg gctacagtcc tttgatttta aagtagtcta caaagcggga aaagagaaca      3180
     tctccgacgc tctatcccga ctttgtccgt tatcagcatc cgactctggt gaaaaagaaa      3240
     tggattgtag catattacaa gtgatcgaga acagcattcc ccaatcaatg actatctcgg      3300
     aaattgcaaa gcattcggta aaggacgaag aaattatcga tgcaaaggcc tgtctggagt      3360
     gcgactcatg gaaaccagga tccctaaaac tgctgtaccc atttcgattt gagttatcag      3420
     caataggacc ccttcttttg cgaggtaacc gaattgttat tcctcaatca cttcggaacc      3480
     aagtgcttga gctggctcac gaaggacacc cgggagagtc agctatgaaa aggcgtctgc      3540
     gatccaaggt atggtggcct ctaattgatc gtgatgcaga gaactatgtc aaacactgca      3600
     gagattgtct tctggtctcc caatgcccta ggccagcacc aatggatagg aacccatttc      3660
     caacaggccc atggatttgg gtagcatcag acatattggg gcccctacca aacaacgagt      3720
     ttgttgtagt gtttattgac tactattccc gctatatgga gttcaaattt ttacgctcaa      3780
     tttccacaaa aagcttaatt gaagtaatga aggaaatatt ctgtagatta ggctacccaa      3840
     aatacttaaa aactgacaat ggacggcagt atataagtca agaattcgag gaatactgca      3900
     aaacttgcgg tatagaacag gtgaagactc caccctattg gccccaggct aatggggaag      3960
     tggaaaacat gaatcggtct ttggtcaaac ggttaaagat agcacactct aattcaaaga      4020
     attacaagga agaaatccag aaatttgtac tcatgcacaa cgttactcca catggcacaa      4080
     caggagtagc ccccacccaa ctgatgttta atagggttat ccgcgacaag gttccatgta      4140
     taggtgatat tgatgaagag gtttcagact cggccgaaag ggacagggat tgtatgttaa      4200
     aagaaaaagg aaaggaagag gcagataaga agaggggagc acgggaagcc gtgataaacg      4260
     taggggataa agtactcttg aaaaatgtag tgtttcctag taagttgact ccgaatttta      4320
     aggataccga attcgaggtt gttgaaaaag acagaaacat agttaaaatt agggcagggg      4380
     gtaggactct cacgagaaat gtatcgcacc tcaagaaaat accaatcaac gcaagccacc      4440
     cggatacatc tggagactca tcgttaagca gccctcaacc gaagatgaca tctactcagg      4500
     atcaccaaga cgtcgaagaa ggaataggtc atcggcttag acagtcccca gaagatttgg      4560
     ctcctttggc tgccccatcc ttgaagctaa aacttgtcaa taaaggaggg a               4611
//
ID   Gypsy-1_DBp-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DBp_;
KW   Gypsy-1_DBp-I; Gypsy-1_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 654-654 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 217 BP; 63 A; 36 C; 72 G; 46 T; 0 other;
     tgtgggagcc ggcaatgagc ggcgatgtca tgcaggagag cggcgagaat ggcaaggaga        60
     gcgcgagcgg agtgacagag cagggggaga gttagttgta attgaccgag cgtgcggagc       120
     agacgcgacg cgattattac ttaaataaat caattgttct ataatctaaa ttggaaataa       180
     cctgtcctta ttgaggggga acttacgggt tactaca                                217
//
ID   Gypsy-1_DEl-I repbase;    DNA;    INV; 4371 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DEl_;
KW   Gypsy-1_DEl-LTR; Gypsy-1_DEl-I.
XX
NM   Gypsy-1_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4371
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 510-510 (2012).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           166..4353
FT                 /product="Gypsy-1_DEl-I_1p"
FT                 /translation="MPADQNIIQTMLAQQQEFTAALIEQQRTWMQAILEKN
FT                 ASPVASDSSHAGELSMCPPFHKFDKDNQNWESYLEQLSQHFNAYSVSAEQK
FT                 QKAYFLSWCGVNIFELLKNLFGSNNLNTYTYKQLTDKLTEHFTTKRHIVAA
FT                 RYEFFKREMKHSQTHREWVADLRGIARECQFVCNANGCLSNYVDEMIRDQI
FT                 IVHTPYDAVRASALQKSQPTLEDVLIVAETYETTTKTVATLKENVYKQDPI
FT                 NAIHTYTKKPASSGNDARSFKGDLKSCSGCGQTHQREKCKFRTAVCHKCGR
FT                 KGHIAVVCMSKYVKSNVKWPGQVNNREVKSNKNEANEVEVIEAVYSVTGQV
FT                 KCQQNRKVIDLEILKQVISFQMDSGATASVINSNTYALLQKPKLHKCSRVL
FT                 HAFGHTPIPILGELHTFAKCGEKEKQVVIIVANIESSTNLFGMDLFNVFGF
FT                 DIMQVSNIFEVHNDKVSDLCNKYSEVFEPAMGVIKDFKASVFLKSSATPKF
FT                 YKCRQIPFAQMDKFKAEADRLTQAGIWKPVKFSNWASPIVLAPKPGGDIRI
FT                 CGDFKQAVNAQIDVEQYPLPTKEALFHIIRHGKQFSKIDLKDAYLQMELDE
FT                 ASKEIMVVNTPLGLFQYQRLPYGIASAPAIFQRYLEQLLKGIEGCGNYLDD
FT                 IIISAPTSEEHLNRIDRVLSTLQENGIRCKRQKCFFFKDEIEYLGRRISAN
FT                 GILPDSSGLEAVKLLCPPSNLQQLEAFMGKVNYYCNFIPNYSQLAAPLNQL
FT                 RRKDVAFFFGPQQQQAFTALKSHIINATQLAHFDEKLPLVLATDASSFGIG
FT                 VVLSHLQPDGGERPIVFASKTLDKHQVKYSQIEKEGLSIIFGVKRFHQYLY
FT                 GRKFILITDHKPLVTIFNPGKHLPLMTSNRLQRWAIILMAYNFDIQYRSTS
FT                 AHGNADALSRLPVGTDPDFDKEEEACHNVVEVSPPINSEQIRNHMDKDKVL
FT                 KQVLQYVSIGWPEKLQPGNEALLPYFNRKFALTINKQLLCLHTDANRIIIP
FT                 ASLRAHILKLLHEGHWGIIRMKQLARQHVWWPTIDDDIKSLAQSCSICKCN
FT                 NPAPPREYQSWPAATTAWERIHIDFAGPIFDAMWLICVDAYSQFPFVIQMS
FT                 STTTANTIAALSSIFAIEGYPKTMVSDNGPQLTADAFEEFCKLHGIKHITT
FT                 APFHPASNGLAERFVQTFKFAVKKNLKDGIPLREAVTKYLSSYRFTPNAQG
FT                 KTPAELIHGRPVRTVLSQLFEQPVENKRTITKYISNQMVYARNYSRGEKWI
FT                 EGIIDRPVGKMLFIVRTSNGYIKRHFNQLKPKLSANNSIKRPPEFWWIPEL
FT                 PKPSCNQEIQQQDRPLTPPVVQQSDPVPVSRPPERAAEPTQQPRQNQSTRR
FT                 LSGIPVRQSSRVRQEVDRFKPKDFRKTKHINSS"
XX
SQ   Sequence 4371 BP; 1407 A; 1019 C; 879 G; 1064 T; 2 other;
     ttattggcga cgaggataaa aagcagaatc tcagccacaa gaattatcgt ttttgtgtaa        60
     aatcgtaaag gaattacaac attcttgtgt aaaccgtgtt atcagccgca aaaacacatc       120
     gtttttgtgt aatacagtgt cgcgtagtcg ttgattttca tcaagatgcc ggcagatcag       180
     aacataatcc agacaatgct tgctcaacag caagaattta cagcagctct tattgaacaa       240
     caacgaacat ggatgcaagc aatcctagaa aaaaacgctt ctccagttgc tagtgattca       300
     agccacgcgg gtgaattatc tatgtgtcct ccattccaca aattcgacaa agacaatcaa       360
     aattgggagt catatctgga acaattatcg cagcacttca acgcatattc ggttagtgca       420
     gaacaaaaac aaaaggctta tttcctttca tggtgtggtg ttaacatatt cgaactatta       480
     aaaaatctat tcgggagtaa caatttgaac acgtatacat acaagcagct cacagacaag       540
     ctaacggagc atttcaccac aaaacgccat attgtagcag ctcgctacga gtttttcaaa       600
     cgagagatga agcattcaca aacacataga gagtgggtag ccgacttgcg cgggatcgct       660
     cgtgaatgcc aatttgtgtg caacgcaaac ggttgtttat caaattatgt agatgagatg       720
     atacgagatc agatcatagt acatactccg tatgatgcag tccgggcatc tgctcttcaa       780
     aagtcacagc caactcttga agatgttctc atagttgcag aaacctatga gacaacaaca       840
     aaaaccgttg caacgctaaa agagaacgta tacaaacagg atccaatcaa tgcgatccac       900
     acatacacaa aaaagccagc aagcagtgga aacgatgcca gatcgtttaa aggtgatctt       960
     aaatcttgct ctggttgtgg tcaaactcac cagagagaaa aatgtaagtt cagaaccgcc      1020
     gtatgtcaca agtgcggtag gaaaggtcat atagcagtcg tctgtatgtc aaagtatgtc      1080
     aagtcaaatg tcaaatggcc gggtcaagta aataaccggg aagtaaagtc caataagaac      1140
     gaagcaaacg aagtcgaagt gatcgaagca gtttacagtg tcacaggtca agtaaaatgt      1200
     caacaaaaca gaaaagttat tgacctcgaa atattaaaac aagttatctc atttcaaatg      1260
     gattccggag caacagcatc cgtgataaac tccaatacat acgccttgct gcagaagccg      1320
     aaattgcata agtgttcccg agttttacat gcgtttggac atactccaat accaatacta      1380
     ggggagctgc acactttcgc aaagtgcgga gagaaagaga aacaagtggt cataatcgtg      1440
     gcaaatatag aaagttctac taatctcttc ggcatggatt tatttaacgt tttcggattt      1500
     gatatcatgc aagtatcaaa catttttgag gtacataatg acaaagtaag tgacctctgc      1560
     aacaagtaca gcgaagtgtt tgaaccagcc atgggtgtca ttaaagactt caaagccagc      1620
     gtatttttaa aatcttcagc gacaccaaag ttttataaat gccgccaaat tccgttcgct      1680
     caaatggaca aatttaaagc cgaagcagac agactcacac aagccggaat ttggaaacca      1740
     gtaaaattca gcaattgggc atccccaatc gtgctcgctc ctaagccagg tggcgatatt      1800
     cgtatttgtg gcgattttaa acaggcagtc aacgcacaaa tcgacgtcga acagtatccg      1860
     ttaccaacaa aagaagctct atttcacatc attcgtcatg gtaagcagtt cagcaagata      1920
     gacctcaagg atgcctatct ccagatggaa ttagatgagg cttcgaagga aatcatggtg      1980
     gtaaacactc cactgggcct ttttcaatat cagcgtcttc cttacgggat tgcaagcgca      2040
     ccagctatct tccaaagata cctcgagcaa cttctaaaag gaatagaagg ttgtggcaac      2100
     tatttagatg acatcatcat ctcagcacct acaagcgagg aacatctgaa ccgaatcgac      2160
     cgagttctca gcactcttca agagaacggc atcagatgca aacggcaaaa atgcttcttt      2220
     ttcaaggacg aaatagaata cttagggcga agaatcagcg caaacggcat tctcccagac      2280
     agctcaggct tggaggctgt aaaactgttg tgtccgcctt ctaacttaca acaattggaa      2340
     gcattcatgg gtaaagttaa ttattattgt aattttattc cgaactattc gcagttggct      2400
     gctccattga atcaacttcg cagaaaagac gtagccttct tttttggtcc acaacagcag      2460
     caggctttta cagcgcttaa gtcccacatc attaacgcaa cgcagctagc tcactttgat      2520
     gaaaaattac cgctagtgct cgctacagat gcctcatcct ttggcatcgg ggtagtcctt      2580
     tcgcatcttc agccagatgg cggagagaga cccattgttt tcgcatctaa aacgctcgac      2640
     aagcaccagg ttaaatacag ccaaatcgaa aaggaaggac tttccataat atttggagta      2700
     aagcgttttc atcaatacct ttatggcaga aagtttatcc taatcacaga ccacaagccg      2760
     cttgttacca tttttaatcc aggcaagcat ctcccgttga tgacgtcaaa caggctacaa      2820
     cgttgggcta ttattctcat ggcctacaac ttcgatatcc agtatcgatc cacatctgct      2880
     catggtaatg cagatgctct ttcacgcctt ccagtgggta cagatccaga cttcgacaaa      2940
     gaagaggaag cttgccacaa tgtagtcgaa gtatcaccac cgataaattc cgagcaaatt      3000
     cgcaaccaca tggacaaaga caaagttctc aaacaggtcc tgcagtacgt atctatagga      3060
     tggccagaaa aactccagcc aggcaacgaa gccctattgc cttactttaa ccggaagttt      3120
     gctcttacaa ttaacaaaca attgctttgc ctacacacag acgcaaatcg tattataatt      3180
     ccagccagtc tacgtgccca tatcctwaaa ctcttacatg aaggccattg gggcattatt      3240
     cgaatgaagc agttggcaag acaacatgtt tggtggccta ccatagacga tgacatcaaa      3300
     agccttgctc agtcttgtag catctgcaag tgcaacaatc ctgcaccacc aagagagtac      3360
     caaagttggc cagcagcaac aacagcatgg gagcgaattc atatcgactt cgcmggtcca      3420
     atctttgacg ctatgtggct catatgcgtg gacgcgtact cacagttccc atttgtcatc      3480
     caaatgtcgt ctacaacaac cgccaacacg atcgctgcac tttcttcgat tttcgccatc      3540
     gaaggatacc cgaaaaccat ggttagcgac aacggtcctc agcttacagc tgacgccttc      3600
     gaagaattct gcaaactgca cggtataaag catattacca cagcaccgtt tcatccagca      3660
     tccaacggat tagcagagcg atttgtacag acatttaaat tcgcagtcaa gaagaacctc      3720
     aaagacggta taccacttag ggaagctgta acaaaatatc tttcttctta caggttcact      3780
     ccaaacgccc aaggtaaaac tcctgccgag ttaatccacg gtcgaccagt ccgcaccgtg      3840
     cttagtcaac ttttcgagca gcctgtcgag aataaacgga caatcaccaa gtacatctct      3900
     aatcaaatgg tatacgctcg aaactattca aggggagaaa agtggattga aggcattatc      3960
     gaccgtccag ttggaaaaat gctgttcatt gttcgcacgt caaatggtta catcaagcgc      4020
     catttcaacc agctaaaacc gaagttgtca gcaaacaact caatcaagag acctccagag      4080
     ttttggtgga ttcctgaact gccaaagcca tcctgcaatc aagaaataca gcaacaagat      4140
     cgaccgctaa ctccgccagt tgttcagcaa tctgatcctg ttcctgtttc tcgtcctcct      4200
     gaacgcgcag cagagcctac ccagcagccg aggcagaacc aatctacacg acgtctttca      4260
     ggcataccag tacgccaaag cagccgtgtt cgccaggaag tcgatcgttt taagccaaag      4320
     gacttcagaa aaactaagca tataaatagt tcttaattaa aggaggagat g               4371
//
ID   Gypsy-1_DEl-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DEl_;
KW   Gypsy-1_DEl-LTR; Gypsy-1_DEl-I.
XX
NM   Gypsy-1_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-185
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 511-511 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 185 BP; 59 A; 50 C; 22 G; 54 T; 0 other;
     tgttatgtat aagcaaaatg tattctcgct acatcgcaca tccaaaacta atctgtattc        60
     cttcgttcta taagcacaca catgtataca cacacacgtt acttttgttc attctctcgc       120
     tgatctctga ataaagtcag tctgtaccaa gcactcaccg agaacgcttc taaccaaaca       180
     caaca                                                                   185
//
ID   Gypsy-1_Deu-I repbase;    DNA;    INV; 6168 BP.
XX
AC   AFPQ01003934;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_Deu_;
KW   Gypsy-1_Deu-LTR; Gypsy-1_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6168
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01003934; Positions    7160     993.
XX
CC   Positions [3309-3800] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1629..4169
FT                 /product="Gypsy-1_Deu-I_1p"
FT                 /translation="MAKPIKQRHFPVSPAVEKAMYTEIDRMLQLGVIEESE
FT                 SAWSSPIVMVTKPGKVRICLDCRKVNSFTEKDAYPLPQINGILSRLPKAEF
FT                 ITSLDLKDAYWQVPLDVQSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSR
FT                 LMDKVVPAHMRNEVFIYLDDLLIVSASFEDHLEVLRELALHIRRAGLTINI
FT                 GKSHFCMPRVRYLGHIIGDGGIRTDPEKVSAITNFPLPKSLKNLRSFMGMC
FT                 GWYRKFVPNFASLSAPLTDLMTTKRKFILTEEAIRAFERLKQCLSEAPVLC
FT                 GPDFAKPFAIHCDASKTGVGAVLVQVSDEGDERPIAFVSKKLNKAQKNYTV
FT                 TEQECLAAIVALKNFRAYMEGLKFKIITDHASLKWLMSNHDLSSRLARWSL
FT                 VLQRYVFEIEHRKGSLNVVPDVLSRVNEEAVVAIDLTEGFIIDLNSEAFKS
FT                 EEYSNLIKREEENKLNFPDLKVENGYLYRKAEHLTGEQIHDEYAWKLWLPK
FT                 ELVHKVLSLAHDSSLASHGGVHKTIERIRRYYFWPGLVSDVRAYISACEVC
FT                 KCTKAPNCVLRPPLGRAPETQRFFQRLFVDFLGPYPRSRSGNVGIFIVLDH
FT                 FSKFVFLKPVRKIDSSAIVKYLDSELFMTFGVPETMVSDNGSQFRSKAFRG
FT                 LMQEYSINHTLTAVYSPQANASERVNRSVISAIRAYIRPDQKDWDEVLSRI
FT                 SCALRSSIHSSLGTSPYYMAFGQHMVTSGSTYSLLRRLNLLNDRSLQFDRQ
FT                 DSFEIVRKQACEQMYRKHEENKKRYDLRTRNVTYTEGQEVYRRNFKQSCFQ
FT                 TGYNAKFGPMFVKSRIRRKIGNLYYELEDLQGKVVGTYHAKDIRQ"
XX
SQ   Sequence 6168 BP; 2028 A; 1091 C; 1257 G; 1792 T; 0 other;
     gataattatt tattattaat taagaaaagt ggcgcccaac gtgcagggcc ttagtgaata        60
     aattcaagtt cattaagact cgcgaaggac ataatttcag aaactctttc atttcttcgt       120
     actttaaaat ttcacctttc taaattttcg attgtgttcg aattcctgga attcatgccg       180
     aaagaatatc agtattcaaa gctgcccgga attagaccat aaagcggaaa tttcctacct       240
     caagcagaag tgactggagt tttcaggcgc aggaaaacag atttaaaaat caaaacttcg       300
     gttgattttc tgtccgcgat cggaaaaaac caatcactga gctactcaaa ctgttctata       360
     aaggaagtta tcgatgaaca aagaggaaaa tactggcaca acttgcgaga agtgtcgtat       420
     cctatcttcg taacttctga atctaaattc ttactactgg aaggaaaact tgtttacact       480
     ggaatacgag tgtaagagta caccgtccaa aactcaggta gaaagaaagg attatctttc       540
     gaataagttt aagtcaattt gaacgaattt tcttccaaac tccatacacc ttttgagaaa       600
     tgtaagaaaa gagaatgtac atatccttgg ggacgagaac aacaagctaa gggttcagtt       660
     tatataaatt ttattgagtt atatttttct ttattatatt aagatatttt tttttgtgtg       720
     tcacattttt aagaattatt tgagtatgat ggggttagat cgatcgccga ataggagagt       780
     cggaagtgcc tcaaattctt tgtgttctat atgtcaagtt gacattagtt caagcaaggc       840
     atatcgaagt cgcaatacag acagaagact tcatatgcca gtcgaaatca gtccacaatg       900
     accgaccaat agaggacact cttcaaagtg tatctctctc ttccccagac gaacaaatag       960
     tcccagaaag ctctctgctt cacagcaaaa tttcaaagtt aagggacgtc gcaatccatg      1020
     aagtacaaaa gatagctaac gtagctaaac gaaattcacg aaggttaaag gctttttgga      1080
     aaaatgtgaa aagatgcaaa gacagtttga aacacattaa ttccataccc gcaggaacta      1140
     gagatcctcg accgtttcta ccggttcgat tgctcgatcg agttgtatac ggtttgttag      1200
     attcgggagc ttcgattagt tgtatagggg gagaattagc taaggaagtg ataaagaata      1260
     aggaataccg agccataaaa ggcagcgctg cgacagcaga cgggaaatcc caaaatatag      1320
     taggagtcct aaacattgac gtagaatacg gcagtgatag gaagccttta aaactgtatg      1380
     tcgtaccttc actcaaacaa gatttatatc ttggcataga cttttggaag ttatacgatc      1440
     ttcttccaac acatttaaag gtatcggaaa tagaatcggc taaggcagtc cgcccagacg      1500
     aggtggatca acacgatttg tcggaagacg aaaaagctaa attggcaaat accataaatt      1560
     gttttccttc ttttaatcag gaaggattag gcaggacaaa tttgataacc cacactattg      1620
     atgtaggaat ggcgaagccc atcaaacagc ggcatttccc tgtatctcct gcagtcgaaa      1680
     aggcaatgta tactgaaatc gacagaatgt tgcaattggg tgtgatagag gaatcggaga      1740
     gtgcatggtc ctccccgata gtaatggtta ctaaaccagg gaaagttaga atatgtttag      1800
     attgccggaa agtcaatagt ttcacggaaa aggacgcgta tcctcttcct caaataaatg      1860
     ggattttgag ccgattaccg aaagcagaat ttataactag cttagactta aaggatgctt      1920
     attggcaagt gcctttagac gttcagtcgc gcgataagac tgcgttcacg gtaccaggaa      1980
     gaccgttata ccaatttaaa gtaatgccgt ttggcttatg caatgctacg agcaccatgt      2040
     ctcgtttaat ggacaaggta gtgccagctc acatgaggaa cgaagttttt atatatttag      2100
     atgatcttct aatagtatct gcaagttttg aagatcacct cgaagttctc agggagttag      2160
     cattgcacat taggcgtgca ggtttgacaa tcaacattgg caaaagtcac ttctgcatgc      2220
     cgcgagtgcg ttatctaggt catataatag gtgacggcgg aatccgtaca gacccagaaa      2280
     aggtgtctgc gattaccaac tttcctttac caaaaagctt aaagaacttg agaagcttta      2340
     tggggatgtg tggatggtat cggaaattcg tgccaaattt tgcgtctctg tctgctcctt      2400
     tgacagactt gatgacgaca aaacgaaagt tcatcttgac cgaagaggct ataagagcgt      2460
     ttgaaaggct aaagcagtgt cttagtgaag cacctgtttt atgtggtcca gacttcgcga      2520
     agccgtttgc tatacactgt gatgccagca aaacaggcgt aggagctgta ttagtgcaag      2580
     tttcagacga aggcgacgag agaccgattg cttttgtttc aaagaaattg aataaagctc      2640
     agaaaaacta cacagtcact gaacaagaat gtttagctgc catcgtcgct ttaaagaatt      2700
     ttagagcgta tatggagggg ttgaaattca agataattac cgatcatgct tctttaaagt      2760
     ggttgatgtc gaaccacgat ttaagttccc gattagctcg gtggtcgtta gtgttacaaa      2820
     gatacgtttt cgagatcgag catcgcaagg gttcactaaa cgttgttccc gacgttttgt      2880
     ctcgcgtgaa cgaagaggca gttgttgcca tagatttgac ggaaggattt attattgatc      2940
     taaattccga agcttttaaa tcggaggagt atagtaatct gataaagaga gaggaagaaa      3000
     ataaactaaa tttccctgat cttaaggtgg aaaacggtta tttgtatcgt aaagcggaac      3060
     acttaaccgg ggaacagata catgacgaat acgcatggaa gctttggtta ccaaaggaat      3120
     tagtgcacaa agttctttct ctagctcatg atagctcctt ggcctcacat ggaggcgtac      3180
     acaaaactat cgagaggatt aggcgatact atttctggcc tggtctcgtt tcagacgtaa      3240
     gagcctacat aagtgcttgt gaggtttgca aatgcacgaa agcaccaaat tgtgttctca      3300
     gacctccttt gggaagagca ccggagactc agcggttctt tcaaaggctt ttcgttgatt      3360
     ttctcgggcc ttatcccaga tcgcgaagtg gaaacgtggg catttttatc gtcctcgatc      3420
     acttctcaaa gtttgttttc cttaaacctg ttaggaagat tgattctagc gcaattgtga      3480
     agtatctaga cagtgaactg tttatgactt ttggagtccc tgaaacaatg gtgtcagata      3540
     acgggtccca atttcggtcg aaagcgtttc gaggattgat gcaggaatat agcattaatc      3600
     atactctgac tgctgtttat tcacctcagg ctaacgcctc ggagcgtgta aatagatcgg      3660
     tcatatccgc cattagagcg tatatacgcc cggatcagaa ggattgggat gaagttctga      3720
     gccggatatc ttgcgcgctg aggtcttcca tacactccag ccttggaaca agtccgtact      3780
     acatggcttt tggacagcat atggttacct ccggttcgac ctattctctg ctccgacgtt      3840
     taaatctttt aaacgatcgt tcgctacaat ttgacaggca ggattctttc gaaatagttc      3900
     gcaaacaagc ttgcgagcaa atgtatagaa agcacgagga aaacaagaag cgctatgatc      3960
     tccgcactcg taatgttacg tatactgaag gtcaagaggt atatcgacgt aactttaagc      4020
     aaagctgctt tcaaactgga tataacgcca aattcgggcc aatgtttgta aaatctcgga      4080
     ttcgaagaaa aatcggtaac ctctattatg aactggaaga cctccaagga aaagttgtag      4140
     gtacatatca cgctaaagac attcggcaat agcttcagtc ggaatcagtc tagtgtattc      4200
     tctcaattat accctagtct gattttagcg ggggagtttt gtactggcga ctgaagccaa      4260
     agaaaaattc aaatgttttt atatttggcg ccaaagaccg taagcgtaga ttaccgacta      4320
     ggtaaactaa gagttgccat ccgagatgca gcttcttatc agctgtatgc aggtatgcac      4380
     tggaaagctc tatttaccta tgatggcgta aggttggatc gacatagatt tccgctctga      4440
     aatcttagat tctattcgat ccaacctcca gagcagaaag acctgtgcac gtaagttcct      4500
     agcctgggca tgtgggtgtt tgctcacaca gaggttaaat tcttttgggt tatttattca      4560
     gatttaccca aatcaacctg ccgactgtat tccgccagcc cagccaagaa ggaaggacgg      4620
     aaataggaag ccttaggagt taccggcctt acctagaaga acccacctac atgtggatca      4680
     tctataggcc cggcatccag gtgtagcaaa ccctaagccg gcccagcgat tctcaagtgt      4740
     cccgcggagc gcattttttt tatcccaacg agggatcggc aactccgtgg gccagcagtt      4800
     ttggaggtaa cagcgggcgg aaaaagccta gtgggagtga aaaacgtgaa attaacctaa      4860
     agccccttaa aaaaaccacg tgtacacaga gaaaaatata agacaaaaaa ctataataaa      4920
     aaaattatta aataacaaag atcaatgctt gcgagctata aaaaaacgtg aaaatgtaaa      4980
     taaaatgtgc agaaacaaaa attaaaattt atttttttgg ttataccaaa atttttttaa      5040
     gtgaaataca ctataaacaa tgaagtgaga attcaaataa ataatcctta aaaattataa      5100
     tgaagctaaa acagtattag gaaaatatta taaaagaact aaatgcgaag gtgaaaacga      5160
     aaacctaaaa aaaaataaat tatgtaaata aagctaaaaa tgttaaaacg tgcaaaaaaa      5220
     attagaaagg cgcttcgaaa tattgattgt tttttttttt attttttctt ttattttgtt      5280
     ttggttggtg agtttggttt gacagagcaa gaagcactga aagaaaagct ctgatgtgtt      5340
     aacaaaaaaa aaaaaaatta attaattacg tctcagaatt tcccaaaaat tatgggaaaa      5400
     gccccccaaa attccgtttc agcacgccag cgccgggaga tcgatctttc gtcatggaaa      5460
     atgcacgtga gtttgttttc ttaatttgta ttcacttttt tacaacacaa aaattaacag      5520
     catgcaatta ttatttattt tgttgtaatt tgaattcctc actaaaacga attttgcgga      5580
     atagaaagat gggaaaaaag aagaatcaaa gaacggttat atttacagcg agcttatctt      5640
     ttagtcagcg agctttgact acactgagag aaattttgaa tgaattttat ttaatttaat      5700
     attattgaaa taaaaataat tagagattat cagatgcgta tgaaaacata aaatatttta      5760
     gataaaagaa aattttgaaa tacactggaa aaaaatatat ttgaaaattt ttataaaggc      5820
     ttaaaaaaat atataaaaat aaaatttttt tttataaata ttaaatgaat aacgccaatt      5880
     aataatatag tttaaattta ttttcgaata ttgcccgcca agtttattgc cacgtttggg      5940
     ataggaattt aaattttttt gtttactttt cttttttaaa taaattatgc cgttacttta      6000
     atatttttaa caccttaata tttttaacat taatactttt ttttttaaat attcctttat      6060
     atttagtttt aatttattat tataattact atatttctac ccccaaattt tgaatatttg      6120
     agtacaatct ttggttataa ttttctatcg cacaaaacaa aaaaaaaa                   6168
//
ID   Gypsy-1_Deu-LTR repbase;    DNA;    INV; 492 BP.
XX
AC   AFPQ01003934;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_Deu_;
KW   Gypsy-1_Deu-I; Gypsy-1_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-492
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01003934; Positions     992     501.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 492 BP; 126 A; 110 C; 99 G; 157 T; 0 other;
     tgtatccttt aattattacc ttttataacg tttgaagaaa taataagata atgaataact        60
     aaacacataa ctgaaccatg ctgttgtttc tcagacccta ggatgtgaag ggatcctcag       120
     agccatgctc gagcggagag ggtcgtaggt tgggtagggc ataaagcgta caccattcca       180
     gctgtgtatc gcaacctttc tttttatttc tcacctcttt ctctttccct ttcttcgggt       240
     ttctctgaaa ttgtccgtct gttcttccgg ttatctagct ctctagatat tttcacaggt       300
     ttcctgtttg agtatttttt tgtcgcagca cgctaaattc gatttctaat taataataat       360
     gtgtagttgg tgtgggattc tgtacggagc aaaaccacca ccccccaagc cgacgagtca       420
     gagccggaaa agtaaagcgt gccccgcaag tacagaatcc cggattgatc gctaataccg       480
     ttacacgtta ca                                                           492
//
ID   Gypsy-1_DFi-I repbase;    DNA;    INV; 8634 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DFi_;
KW   Gypsy-1_DFi-LTR; Gypsy-1_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-8634
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 889-889 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [6328-6837] - Integrase core
CC   LTRs are 94% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2184..3581
FT                 /product="Gypsy-1_DFi-I_2p"
FT                 /translation="MPLARSPEVAQEERRAGHCFICLSSIEYTAQLLTTNC
FT                 NHTFHRACFNNTNRKVCPVCRAPVESPETLDDSQAEQPSGSQSLNREREAE
FT                 AEMDSQEKAPNLGELMRAITDAMRAASHTQAEAITDMSDRQIQLISRAIES
FT                 GFQRLSVQGRPSETRDRRQASAVNSPNHQGNINSQASFHSDASELRPDRIS
FT                 QIMTNWKLRYTGKGSLSVDDFIYRAEALTRQTLEGNFTLLARYSSNLFEGG
FT                 AAEWFWRYHKTVPFLTWSDLCVALRTQFKDARTDRDIQATIDQRKQKHNES
FT                 FDEYYQVIAAMADHLSQPMSESYMLGVLRSNLLTEIQHELLHVPIHSVADL
FT                 RQAVRRHEIFKQNVSKPHITFSRQAPKRQVNEIDTQIQDQQDSEDPEVEEI
FT                 AAIELKCWNCDMTGHRYHDCTSERRVFCYGCGKPDTYRPTCRKCQSSKNWV
FT                 ARAPTNSARKMYPSSEQKMDQ"
FT   CDS           4726..7173
FT                 /product="Gypsy-1_DFi-I_1p"
FT                 /translation="MMYEELDRMLSLGVIEESNSAWSSPVVLVRKPGKVRL
FT                 CLDSRKVNAVTVKDAYPMPFIDGILSRLPKAEFISSLDLKDAFWQIPLEPK
FT                 SRDKTAFTVPGRPLYQYTVMPFGLCNAPQTMSKLMDKIVPAELKREVFVYL
FT                 DDLLIVSDSFGKHIQTLQQLAAQISKAGLTINVQKSKFCLKEIQYLGHVVG
FT                 QGTIATDPDKLSAIVDFPEPRSVKQLRRFLGMTGWYHKFIRNYATIASPLT
FT                 DALRQKRKFEWSTEAQNAFEALKKHMCEAPVLHSPNFEEPFFIHCDASHTG
FT                 IGGVLVQLSAEGDEVPIAFMSRKLNQCQRNYSVTEKECLAAIMSIKKFRAY
FT                 VEGHKFTVVTDHASLKWLMSQTDLSSRLARWALKLQGFSFEIKHRKGSQNI
FT                 VPDALSRTFTEDLSSLEVDQFIDLQSDHFKCKEYEELKCKVQQNQSQLPDV
FT                 KVLGEVLYRRMEHATDDRIADDMAWKIWIPKGLIHTVLQISHDHPLASHCG
FT                 INKTLERVRRYFFWPNLVADVKAHVNGCEICKCSKHPNYSLRPTLSKTGET
FT                 HRFFQKLYVDFLGPYPRSRSGHIGVFVVLDHFSKFPFLKPVKKFTTEAILK
FT                 YVEEDLLHCFGIPEVIVSDNGVQFKSLAFNRLLDKYNIRHAYTAIYAPQGN
FT                 ASERVNRSVIAAIKSYIHPNQTNWDEQLSKICCSLRSSFHTAVNTTPYRLT
FT                 FGQHMVTNGSTYKLLRNLEMLEDRTVCFQRDDSFDLEREKAIVTMRKQHQR
FT                 NENAYNLRSREVSFTTGQEVYRRNFSQSNFAKGYNAKLAPTFLKARIKGKL
FT                 GNSYYDVEDLRGHY"
XX
SQ   Sequence 8634 BP; 2724 A; 1694 C; 1782 G; 2421 T; 13 other;
     aggaaaaaaa agtgacttaa aaattatcaa ataaataaat taaaataaaa ggggaaacct        60
     aaagtggcag gccccaacgg caatgataac tcaagtgaaa atttaataat aaatatggga       120
     aatcttagac ccactgatct ggcagctaaa aagaaaagtg cagtgtacca aaagtgaatg       180
     aaataagata aggcaatgca agtgaaacca aaagaaatca aaaggtttga gaagcattgg       240
     aaaataaaaa ctgaaagtga tctaaaatcc aaaaaaaaaa ttcctctccc ctcaattcgc       300
     cgaaagcgct ttcgtccgac tggaaatgga gcggtaagtc tttttaaagc tattatcact       360
     gtttcagaaa ccttttttaa ttaaagtctt gctgccgaaa tacaaaatat taaatgaaac       420
     gaaaagaaaa caaattttaa cgtaaagaaa aaaaaggaaa gtcaaagaaa ataatttttg       480
     tttgtttttt ttggaaaata tgttaattaa taataaataa atttgaaaat gaagaaaaat       540
     caaagaatga aaatccagtt gtaaataaat aaaaaaaaaa acacgcacca cttttcttgt       600
     gtacggtcca gaaatgatga tggaattaaa taaacccttt atttattata tgccttatat       660
     acacatatat gccgactttt aatctgtcgc agtgccaaat atttttgcta aatttaatat       720
     ttttatatat atatatacct atgccatatt atttttccca cagcaccatt ctcacgattt       780
     ctcacgaata ataacaacaa aaagaacatt ttaagatttt tttttgcgaa aattaaaata       840
     aaataccaag cctaattaaa ctaaatattt tataggaatt aattttaaac gctaccacca       900
     ccgtgatgga agctattaat gaataaattg tgtaaagtga aaatgaacaa ctgctaagcg       960
     tttaccgtgg gggtcatgcc gaacagcaat atggtagggt attaaagaag cgacttgaac      1020
     atagggacca tttaatgaaa gacataattt tggagccgga gtaaatggtc taggttgggt      1080
     gggctaatgc aagttgctga acaacaacta cagcaacaac attcaagtca aattgtttta      1140
     gaattgtatc tttctctttt tctattgtcg atcatttctt tctttcttct ttatcctgtc      1200
     agttttgagt gagttaattc cccctacccc aaagcacgcg aaatcaaata atattactgc      1260
     ataaaacgcc agcatttcga gtagtactct catagaacca cccccccatt gacccgattc      1320
     tgagcagcgc cggtagcaac gcgtgctgta ctacctcgta cgtccatcag ctggtcacta      1380
     cagaataccc tgctattttg tatacccgtg atatgctaca ataaatatta tttgtggcgc      1440
     ccaaagtgtc ggccaaccgg caagccgagt tatccatgat tatagccatg ttcgtttcca      1500
     tctaggaact tggggaaaat ttcaaaagtt ttcgccattt cattctccca cacactcgat      1560
     tctaaaatct ttcctatttc ttgttgtgat taagaatatg ctattggata atgggacagg      1620
     ttgaggaaaa attctgtaat cgaattttta agccctggtt ctacaaaagt gtacttaatc      1680
     aagcctagta tctgagggtc ttgactagcg aaggattttc aagtaaacgc gcttcggcca      1740
     cttgaaagat attaaggtac agaaatttaa attgagataa atgataaagt cgacataggg      1800
     tgtcttgact cagcaaaagc cccttccttt gttaatttta ctcgatctaa atgccattct      1860
     tctatttagc tgttgagtac gatcagtttc aaaataacta tcggagccag ttaaaacttt      1920
     tttttgtgtt aatacctttc ttttccttga tgtgaaatgg gtgtttaata catgaaactc      1980
     tgtcgtggtg taagactacc attgagatct atattaacaa caaacaaact acatccatta      2040
     cttatctgtg tgctaaacta aaacaatttt tcttaccctt ccagaagcaa gtgatcgcat      2100
     gaccctagta aattttataa tattatattt ataaactctt tgataaaatt tctcttataa      2160
     aagttaatta tttaccttaa accatgcctt tagcacgtag ccctgaggtc gcgcaagaag      2220
     aaaggagagc aggacattgt tttatttgtt taagctcaat tgagtataca gcacagctgc      2280
     taacgactaa ttgcaatcat acctttcatc gagcgtgttt taataacaca aatcgtaaag      2340
     tttgtcccgt ttgcagagct ccagtggagt caccagaaac gttagacgac agtcaggcag      2400
     aacaaccatc aggttcccaa agtttaaatc gagaacggga agcagaagcc gaaatggact      2460
     cgcaagaaaa agcaccaaat ttaggtgaat taatgcgggc aataaccgat gccatgagag      2520
     ccgcttcaca tacgcaggca gaggcaataa ccgatatgtc ggacaggcaa atacaactca      2580
     tttcaagagc tatagagtca ggtttccaaa gattgtcagt tcagggtcga cctagcgaaa      2640
     caagagatag aaggcaagct tcagcagtaa attcgccaaa tcatcaggga aatataaact      2700
     cacaagccag tttccattcc gatgcatccg aactaaggcc agatcgtatt agccaaatca      2760
     tgactaattg gaaactaaga tacacgggca agggttctct atctgttgat gattttattt      2820
     atcgagctga ggccttgact aggcaaacct tagaagggaa ttttactttg ttggcccgat      2880
     attcgagcaa tttgtttgaa ggcggtgccg ctgagtggtt ctggagatac cataaaaccg      2940
     taccattctt aacgtggtcc gatttgtgcg tagcgctaag gacgcagttt aaagatgcgc      3000
     gtaccgatag ggatatccaa gccacaattg atcaacgtaa gcaaaaacac aatgagtcat      3060
     ttgatgaata ctaccaggta atagcagcaa tggctgacca cttgtcgcag ccaatgtccg      3120
     agtcctatat gttgggggtc ttaaggtcaa accttctgac tgagatacaa catgagttgc      3180
     ttcatgtgcc gatccacagc gtggctgacc tacgtcaagc cgtacgtagg catgagattt      3240
     tcaagcagaa tgtgtccaaa cctcatatta ctttcagtcg acaggcacca aagagacagg      3300
     tgaacgagat agatacccaa attcaggatc aacaagacag cgaagatcct gaggttgaag      3360
     aaatcgcagc gatcgagttg aaatgttgga attgtgacat gacaggtcat agatatcacg      3420
     actgtaccag tgaacgccgc gttttctgct atggatgcgg aaagcctgac acttatcggc      3480
     caacctgcag aaaatgtcag tcatcaaaaa actgggttgc tcgagcacca acgaacagtg      3540
     ctcgcaaaat gtatccgtcg tccgaacaga aaatggatca ataggttctg aggaagtttc      3600
     agctatccca gaagttaata aaccaccaga ttgtaataat ttaccggatg taacaatacg      3660
     taatcgattt agtcagcttg gtgcaaggca cagtagtctt ccggaacggg agaccgaacc      3720
     aagacagcgc aaatcagagc gtcgtcgact ktattttaag gtgcgcaagc aagaacgttc      3780
     caaggtactt tccgctatca ttggaaatcc attagatgtc agaccatacg cagaagtatc      3840
     gattctaggg aaaaggatta gtggcttgct agacacggga gcatctmtta gttgtattgg      3900
     cggatctctg gcgaaggaac ttataaatgg cggaagtagt tttaagcctt ataaatgttc      3960
     agtaaaaaca gcagatggta ggcctcagga aattataggc aagctaaaag cgaaggttat      4020
     tttwaggaat tcgcaaaaaa atttacattc tgttactcca cccgggagct tagagcctct      4080
     acaatttctt gtagaggatt cattatcatt gattttcgat cgtaccggtg ataagccagt      4140
     agcgacttat cctagcggtg gggttgccac ctggcgccat ctaggagtga cgaaaattct      4200
     attgatgggt ccatagtaac gtggacgagg gggtgtgcgg gtccggggag ccgaaatttg      4260
     ttactaatgt taagtgagcg atagagcata gaagtgattt ggaaaaagag accgtttctt      4320
     tttctcgggg agcctggggc tcgacttgaa cccgggcctt ccggaccgga tgccagcgct      4380
     ctacctgctg gaccaccggc cgaactgtga attcgcaaaa agaactggtg ttttatatcg      4440
     tgccttcgct ctcccaaaat ctttacctag gtattgattt ctgggtcagt tttgagttgc      4500
     taccttcttc cctttccaac cttgctgttt cagcactaga agatccattg ctgcgaccac      4560
     tawctgcggg gcagcgaaaa caattggaga gcaccattgc attatttcct tcmttttctg      4620
     aaaatggttt gggtcgaact tcggtacttg cacataccat tgatgttgca gatgcaaaac      4680
     caataaagca gagacactat cccgtgtctc ctgcttatag aaaaaatgat gtacgaagag      4740
     ctagaccgta tgctgtcttt gggagttatc gaggagtcca acagtgcgtg gtcttctcct      4800
     gttgttcttg tacgtaagcc aggaaaagtt cgcctgtgct tggacagtag gaaggtaaac      4860
     gckgtaacmg tcaaggatgc ctatcctatg ccgttcatcg acggaatttt aagtcgactg      4920
     ccaaaagcag aatttatttc aagtctagac ttaaaggatg ctttttggca aattccgctt      4980
     gaaccaaaat caagagataa gacagctttt accgtccctg gtcggcccct ctatcaatat      5040
     acggtaatgc cgtttgggct ctgcaatgca ccccagacca tgtccaaatt gatggacaaa      5100
     attgttccgg cagagttaaa gagagaagtt tttgtttatc tggacgattt attaatcgta      5160
     tccgactcct ttggaaaaca tattcagacg ttacaacaac tggcagctca gatttcgaag      5220
     gctggactta caatcaacgt ccagaaaagc aagttttgtc taaaagaaat tcaatattta      5280
     ggccacgttg taggacaggg aactatcgcc accgatccag ataaactttc agccattgta      5340
     gattttccag aaccacgttc agtcaaacag cttcgcagat ttttgggtat gactgggtgg      5400
     taccacaaat ttataagaaa ctatgccacc atcgcttcac ctttaacaga tgccctcaga      5460
     caaaagagaa aatttgaatg gtccactgag gcgcaaaatg cgtttgaagc tctcaagaag      5520
     catatgtgtg aggcaccggt tttacatagc ccaaatttcg aggaaccttt cttcatacat      5580
     tgtgacgcca gtcacactgg aatcggggga gttttggtcc agctaagcgc tgaaggtgac      5640
     gaagtaccaa ttgccttcat gtctcgtaag ctgaatcaat gccaaagaaa ctattccgta      5700
     acggagaagg aatgtctggc cgcgattatg tctataaaga aattccgagc gtacgttgaa      5760
     ggccataagt ttaccgtagt cacagaccat gcgtcgttga agtggctcat gtctcagact      5820
     gacttgagta gcagattggc aagatgggct ctcaagctcc aagggtttag ttttgagatc      5880
     aaacatagga agggcagcca gaatattgtc ccggatgcgc tctcgcgaac atttacagaa      5940
     gacttgtcat ccttagaggt agatcagttt atagatctcc agtcagacca tttcaaatgc      6000
     aaagaatacg aggaattaaa atgcaaggtc cagcagaatc agtctcagct tcccgacgtg      6060
     aaagttttag gcgaggtttt gtatcgcagg atggagcatg cgactgacga taggatagcg      6120
     gatgatatgg cctggaaaat ttggattcca aaaggattaa ttcatactgt gctgcaaata      6180
     tcgcatgacc accccttagc atctcactgt ggtataaata agaccctgga acgagtacgc      6240
     agatacttct tctggcccaa tctggtagca gacgtcaagg ctcatgtgaa tggctgcgaa      6300
     atatgcaaat gttcgaaaca tcccaattat agtcttagac cgactcttag caaaaccggc      6360
     gaaacgcata gatttttcca aaaactctac gtagattttc taggaccata tccgcgatct      6420
     cgatctggcc atataggagt tttcgtggtg ttggatcatt tttcaaaatt tccgtttttg      6480
     aagcccgtca agaagtttac gaccgaggca attttgaaat atgttgagga ggatttattg      6540
     cactgtttcg gtattcctga ggtgattgta tccgacaatg gcgttcagtt taagtctctc      6600
     gcttttaatc ggctgttaga caaatataat atacgtcacg catacacagc aatttacgca      6660
     cctcagggaa acgcctccga gagagttaac aggtcagtaa tcgctgcgat taagtcttac      6720
     atacacccaa atcagactaa ctgggatgag cagttgagta aaatttgctg ctcgctgcgt      6780
     tctagcttcc atacggccgt taataccacg ccctataggt tgacatttgg ccaacacatg      6840
     gttaccaatg gttccacata taagctctta cggaacctgg aaatgctaga agaccgcaca      6900
     gtttgtttcc agcgagatga cagtttcgat ttggaacggg aaaaggcaat agtcaccatg      6960
     agaaaacagc accagagaaa cgaaaacgct tacaatctta gaagtcgtga agtttccttc      7020
     acaaccggtc aggaagtcta tagacgaaat ttttctcaga gcaactttgc caagggctac      7080
     aatgccaaac ttgctccaac gtttctcaaa gctcgaatca agggaaaact cggtaatagc      7140
     tattacgatg ttgaggatct acgaggtcat tatawaggca agtttcatgc gaaagatctc      7200
     aaacaataam ctcagaaaac tctcagctcc gagcgtggac cccgcttttt asggttttcc      7260
     ttcccctcct aagcgtgatc ttgctggggg ggttttgtag atgcgctcgt cgctggctgt      7320
     cagttgcgtc ccacaaacat gcacagattw ttataaakgc ctagaagccg gcaatgctct      7380
     ctcgctgcct gtggctcaga gcttcgatta aggggggctt ctcatgtaac atgccaaaaa      7440
     gtagtggttt tttgggaatt ttttcacttg gaaaatgaaa acttacacga ataatttttt      7500
     gcacatattt aaagacatgt ttaaagtatg agaaaaacat ttttgaaaat tctaaaaaac      7560
     aaaatggcgg acttattcaa ggtcgcgtgt ggctcgacgc ggctgaggga cttattgcgg      7620
     tatagtgtgg agcaaaaagt tttcatctga aaaaaacaaa aaaaattttt tcttatgcag      7680
     caaggttcaa ccgagtgcgt gaatgtcagc cacttcgaaa aattcgattt taaaatattg      7740
     aaatcacgtc ttgaaaaaaa agtgccattt tttcgtcttt ttttttgtct gaattgggct      7800
     gaaaagtgta taaaataact tttttttcac aatttcagat attcacgcac tcgttcaatg      7860
     tataatctgc aaaacacttt ttagaaatca aaaatcggtt cagtagtttt ttcgtaatcg      7920
     tgtaccgcgt tttttaaaac atagttttga gaaaaaacga tttaaagttt tgagttagtg      7980
     tgggtcttga acttgagcgc gctcgttcaa tcactgatat tttccataat attgagagtt      8040
     gagtcataaa acttcgggaa tatactctca agacgttatt ctatcgattt atgaaaaaaa      8100
     aatttcgatt cttttaaaat tttacatgag aagcccccat taagttgccc tacgtaattg      8160
     gggtccgtcc caatacgtta gtattttggt tattttatag gttttagtat aaattgtaat      8220
     taatacaaaa taatctaatt aaaaatgaag gaaaagggca atgaaagaaa tgaatttttt      8280
     tgtaattaac tagttggaaa ttgtggattt atatttgcat aaaatgaata ctagaattta      8340
     tagcagataa tatgcaagat ttttctccca ctcccgggat ggtatccttt cctaaatgtc      8400
     atcwagactt cctaaaagtg tcatggcgtt cgggaatcgg gcctataaaa agtggcctta      8460
     accctaagct cgtcctattt gccgctacac cctggagaag accacatcgt cagaaaacac      8520
     gtcaaaaagt aattttttta ttagtatcca taccggttgc aagcctagac aggcaaatta      8580
     acttcgtttt aaataatacc cttacttggg aaaaaggtaa ataataatcg gcat            8634
//
ID   Gypsy-1_DFi-LTR repbase;    DNA;    INV; 614 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DFi_;
KW   Gypsy-1_DFi-I; Gypsy-1_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-614
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 890-890 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 614 BP; 195 A; 120 C; 131 G; 162 T; 6 other;
     tgaacacaac aaaaattcca agttcagggg atttaagggg aaattgcttt tccaggccat        60
     catcgaaatc ttccgatttc cattcgtcgc aaaatttctc tccgcaagtc caaaaagctt       120
     gcggggcgaa gagaaagagg aagaagggag caggcgccaa gccaagataa gttcttcggc       180
     agcttaaaat agtattcgcc gacctataaa tcgagamagc cgcatgatcg ttatataaac       240
     gccgggatcc gttttcgctc gcatcaccaa aaaatgkgta aaaatgtggt aaaatgcgta       300
     caaagttagt cccgatcgtm aggmagcccc aaatgtagtc gggaaattcg cgggaaatcg       360
     gttcgaaaca agtgcagcaa cataacccck acgctgacca taggttatgt aatcgccgcg       420
     agacacccca aaccacgatg cccagagctg gcaaaaatcc gtatttttct ttccgaattt       480
     tccttactta gtttgtttta taatttcttc tttttttttg ctattttttt ttgwtgtttg       540
     agaatttgaa aatgaaaaaa aaaggtgaaa tcaataaatg tgagagaatg gtgtggtaag       600
     taaaataatg tgca                                                         614
//
ID   Gypsy-1_DG-I repbase;    DNA;    INV; 8196 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DG_;
KW   Gypsy-1_DG-LTR; Gypsy-1_DG-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8196
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1275-1275 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2630-3139] - Reverse transcriptase
CC   Positions [4232-4744] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           684..2027
FT                 /product="Gypsy-1_DG-I_3p"
FT                 /translation="MVRAWVYNLKKDEVLKYGAEFEVELSGTLDAMRRQFG
FT                 DWVSTHENRLPYSTRLEELAAIHGRQSPAREPENGADARESTNINFAQLSI
FT                 PATSAAARTRDANNTLWGVASTPQPQRRVSINEQSAPTMSQEYPRVAKQVR
FT                 EWNFRFDGTTKPLEFLEQVEWSADTYGLNLNLIPRAMPELLQGMALKWYVA
FT                 NNQHWTRWVAFVQSFQEYFLPRDYFENLKDEVTRRRQAMHEPFKVYMVEMQ
FT                 TLMRPLQYTAEKQLNKIYNNSLPDLRAYARPYQFNNLAELMHLAEAFEELE
FT                 ADREKLRRQSRMEQPRPMEPPRRRMEPPQMRQEAPQYSHRESAQRYNRPRF
FT                 MAMTDNQNTHNQAYQERTEFDTRPRPAPRTRRDNIQTHISNPARACRFCGQ
FT                 EGHFAMECTNPMLEYCWLCGRIGVRTSVCCPSGNEHRRPPPRGEREPNRSA
FT                 PRR"
FT   CDS           1847..5122
FT                 /product="Gypsy-1_DG-I_2p"
FT                 /translation="MQILRPGGTLRNGVYESYAGILLAMWTYRSSYVSMLS
FT                 VGKRAPASATEGRAGAEQISPKTLIGSLQDEGAQLTAVVEIGNCRYKATID
FT                 TGATSSFVSEKLAHGLINVGRRSATARRVRLADGRNSGVREQVEVNIRLGL
FT                 RNMDIALLILPGVIDDLVLGWDFLSGMGTVLECAGLLVSIPKCETNHQEEM
FT                 LSVAKTVETPIHPDAEIDQFLRGELAAFGEIKGTSPITEHRIVMSDDRPIK
FT                 QRYFPKNPKMQAEINKQVDDLLTKGCIEPSRSPHSAPIVMVKKKTGKWRLC
FT                 VDFRQLNGKSIKDAYPLPRVHHILDQLREAKFITSLDLKDGYWQIPMEKES
FT                 RALTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDRVIGPEMMPHAFAYLD
FT                 DIIVIGKTREEHMDNLREVFRRLRAANLRINVDKCDFFKKELKYLGHQVTE
FT                 EGIRTDPEKVAAIAELKPPGNVKELRQYLGVASWYRRFVPDFATTVHPLHT
FT                 LLKKGTKWEWTGEHQEAFEKVKAKLTQSPVLACPDFSKPFCLQTDASNYGL
FT                 GAILTQDSEEGERVISYASRSLNGAERNYSATEKECLAIIWGIRKLRPYLE
FT                 GYHFTVITDHMALKWLNSIESPSGRIARWALELQQFDFDVKYRKGNLNVVA
FT                 DALSRQPLKDTCLRVSTMDDAMDQANKCCNWIQKMRSDIAKNPRKFPDYSE
FT                 ESGNLYRHIPHRAGTEDVVAWKLCVPTGKRRQVLIENHNTATAGHTGSRKT
FT                 IARIAARYYWPGLYRDVRAYVQQCEICQQYKPSQMAAAGQMLTKIPEEPWT
FT                 TVCADFVGPLPRSTHGNTMLLVFIDRFSKWTEMVPLRSATTATLQKAFRER
FT                 ILARFGVPKVLITDNGTQFTSRALKNFLEEMGIKHQFTAPYTPQENPTERA
FT                 NRTVKTMIAQFTKDNQRRWDEALPELTLAVNTSVSSSTGYSAAFVTQGREP
FT                 RLPKALFDEVTVGTGQVAQTPSDNAKKLKEVFEIVRRSLEKAAQDQARHYN
FT                 LRRRPWKPNIGDRVWVKLHHLSNAAEGFAAKLAPRYGGPYQIVDFTSPVIC
FT                 KIKGITDRRIRTAHVSDLKPHNDRKDTGEPENSKH"
XX
SQ   Sequence 8196 BP; 2576 A; 1996 C; 2192 G; 1430 T; 2 other;
     gtgaaagtgc aaggacacgg agtgtcaaac tcaacaagga tcacaggaca tcgaggtcct        60
     ggaattaggt gcgagccgta tatccttgcc acgcttgaat tgtggcaaca ggcgatatcc       120
     gcaaggaacc aagtgaagca agcgaggctt ggtctgtgat tagccagaga gtgagacacg       180
     cggatcctga ctcacaaaag gactcggcgc aatccttggg aagcaaggaa gccgttaatc       240
     ctggtgaacg tcagaagtgc tgtacggaat ctctggcggg cagactgaga tcctgggctt       300
     gcatagctgg tggcggaggg cctggggcag attctggcgc acaggagctc gagtcacacc       360
     tgatcaagga taccgatgcg tggcgagacg ctacggagct agcaataagt agcgataaga       420
     taaagaataa taagaagacc aactgtgaat ggtaatatca agcaataaaa gtgaaataaa       480
     taaagcgagt ttaatatatt gatgctgtgt tgttaattgt tgcaaacgca atataaattt       540
     gttgctcgaa cccacagctc gactgagttt tagcctagct aaaacaccac ctagcaaata       600
     ggttcgttac aactggcgcc caactttggt ggttgcaata aattaaaaac acacattaga       660
     tattaaaata aaataaaata aaaatggttc gcgcgtgggt gtacaattta aaaaaagacg       720
     aagtgctgaa atatggagct gaattcgaag tggagttatc cggaactttg gatgctatgc       780
     gcagacaatt tggagactgg gtgagtactc acgaaaacag attgccatat agcacaagat       840
     tggaggaact ggcggcgatt catggcagac aatcgccggc cagagaacca gaaaatggtg       900
     cagatgcaag agagtcgacg aatataaatt tcgcccagct gagcatccca gcaacaagcg       960
     cagcagcgcg gactcgagac gccaataata ctctttgggg ggtagcgtcc acaccacagc      1020
     cacaaagaag agtgtccata aacgaacaat ctgcaccgac tatgtcccag gaatacccca      1080
     gagtagcgaa acaagtccgc gaatggaatt ttcgtttcga cggcaccacc aagcctctgg      1140
     aattcctgga acaagtcgaa tggtcagcag atacatatgg actgaacctg aatttaattc      1200
     ccagggcgat gcccgaatta cttcagggaa tggctcttaa gtggtatgta gccaacaacc      1260
     agcactggac gagatgggta gcattcgtcc aaagttttca ggagtatttc cttccaagag      1320
     actacttcga aaacttaaag gacgaagtta ccagaagacg acaggcgatg cacgaaccgt      1380
     ttaaagtgta catggtagaa atgcagacgc tcatgcggcc actgcagtac acggcggaaa      1440
     aacaacttaa taaaatatac aacaacagcc tcccggatct acgagcttac gccaggccat      1500
     atcaattcaa taatttggca gaattgatgc atttggccga agcgttcgag gaactcgaag      1560
     cggacaggga aaagctgaga cgacagagcc gcatggagca accgagaccc atggaaccac      1620
     cacgacgccg catggagccg ccacaaatgc gtcaggaagc tcctcaatac agccacaggg      1680
     aatccgcgca gagatataat cgaccacgat ttatggcaat gacggacaac caaaacacac      1740
     acaaccaggc gtatcaggag cggacagaat tcgacacgag acccagacct gccccgagga      1800
     cgagacgaga caacatacaa acacatataa gcaacccagc gagggcatgc agattttgcg      1860
     gccaggaggg acacttcgca atggagtgta cgaatcctat gctggaatat tgctggctat      1920
     gtggacgtat cggagttcgt acgtcagtat gttgtccgtc gggaaacgag caccggcgtc      1980
     cgccaccgag gggcgagcgg gagccgaaca gatcagcccc aagacgctaa tcggaagcct      2040
     gcaggacgag ggagcgcagc tgacagcggt cgtagagatc ggcaactgtc ggtataaggc      2100
     tacgattgac acaggggcca cgagtagctt cgttagcgag aagctagctc atggactgat      2160
     caacgtaggc cgacgaagcg caaccgcacg tcgagtccgg ttggcagatg gccgaaacag      2220
     cggagtccga gaacaagtcg aggtgaacat cagactaggg ctgaggaata tggatattgc      2280
     cctactgata ctcccaggag tcatcgacga cttagtcctc ggatgggact ttttgtctgg      2340
     catgggaaca gttttggagt gcgcagggtt actagtaagc attccaaaat gcgagacaaa      2400
     ccaccaagaa gagatgttgt cggttgccaa aacggtcgaa acaccaatac atccggacgc      2460
     agagattgat caatttttgc gaggagaatt ggcggcattt ggggaaataa aaggaacatc      2520
     gcctataact gagcaccgca ttgtcatgag cgacgatcgg ccaattaaac agcggtactt      2580
     ccctaaaaac cccaaaatgc aagccgagat caacaaacag gtggatgact tgttgaccaa      2640
     agggtgcatc gagccctcca gaagcccaca cagcgcacca atcgtgatgg tgaaaaagaa      2700
     aacgggaaaa tggcgtctct gtgtggactt tcggcaacta aacggcaaat ctataaaaga      2760
     tgcatatccg ttgccgcgag tccaccacat tctggaccag ctgagagagg caaaattcat      2820
     aacgagcttg gacctgaaag atggatactg gcagatcccg atggagaagg agagtcgagc      2880
     gttgacggca ttcacagttc cagggaaagg actgttccaa tggaaagtaa tgccattcgg      2940
     actccattcg gcgccagcca cgttccagag ggccctcgat cgcgtgattg gacccgaaat      3000
     gatgccgcat gcgtttgcat atttggacga cattatcgta atcgggaaaa cacgcgagga      3060
     acacatggac aacttaagag aagtgttccg acggttgaga gcagcgaatc tgaggatcaa      3120
     cgtggacaag tgcgacttct tcaaaaagga acttaaatac cttggccatc aggtgaccga      3180
     agaagggata cgcacggatc cggagaaagt agctgctatc gccgagttga aaccccctgg      3240
     aaacgtaaag gaactacgac agtacctagg agtggcatca tggtacagga ggttcgtacc      3300
     agattttgcc acaacagtac acccactaca cacactattg aagaaaggta caaaatggga      3360
     atggaccgga gagcatcaag aagctttcga aaaggtcaaa gctaagctaa cacaatcccc      3420
     tgtgctagca tgcccagatt tctcaaagcc attttgcttg cagacggatg ctagtaatta      3480
     tggcttggga gcgatactga cccaagactc agaggagggc gaacgggtca tatcgtatgc      3540
     aagcagatct ttaaatggtg cggagcgtaa ctactctgcg accgaaaaag agtgccttgc      3600
     aataatctgg ggcataagga agctaagacc gtacctggaa ggataccact tcactgtcat      3660
     cacggatcat atggcactga agtggctgaa ctccatcgaa agcccatcag gtaggattgc      3720
     gagatgggca ctggaactgc aacagtttga ctttgacgtc aaatacagaa agggaaacct      3780
     taatgttgtt gcagatgccc tatcccgaca acccctgaag gatacgtgcc tcagagtctc      3840
     gactatggac gacgcgatgg accaggcaaa caaatgctgt aactggatcc aaaagatgcg      3900
     gtccgacata gcgaaaaatc cgaggaagtt cccagactat agtgaagaat ccggcaatct      3960
     ctatagacac atcccgcata gagctggaac cgaggatgtg gtagcctgga aactatgtgt      4020
     gcccaccgga aagagaaggc aagtgctaat tgaaaaccac aacaccgcca ccgcwggtca      4080
     tacgggcagc aggaaaacaa tagcccgaat agcagcacgc tactattggc caggcttata      4140
     cagagacgta cgtgcatatg tccaacaatg cgaaatatgt cagcagtata agccaagtca      4200
     aatggccgcg gcaggacaaa tgctgaccaa gataccggag gaaccctgga ccacagtttg      4260
     tgctgacttc gtgggaccac taccgagatc gacccacgga aacacaatgc tgttggtctt      4320
     tatagaccgc ttctcgaaat ggacggaaat ggtaccactc cgaagcgcca ctacagcaac      4380
     gctacaaaag gccttcaggg aaaggattct cgcgcggttt ggagtaccta aagttttaat      4440
     aaccgacaat ggaacacaat ttacaagtcg ggcattaaaa aattttcttg aagagatggg      4500
     aatcaaacat caattcacag cgccctacac tccacaagaa aaccccacgg aacgcgcgaa      4560
     tcgcacggtg aagacaatga tcgcacaatt caccaaggac aaccaaagac gttgggatga      4620
     agctctaccc gagctgacac tggcagttaa caccagcgtc tcaagctcca ccgggtacag      4680
     cgcggcgttc gtaacacaag gccgagagcc taggctgcca aaggcgttgt tcgacgaggt      4740
     gacagtcgga acaggccaag tagctcaaac accgtccgac aatgcaaaga aactaaagga      4800
     agtattcgaa attgtccggc ggagtttaga aaaggcagca caggaccaag caaggcacta      4860
     caacctgcgt cgtagaccgt ggaaaccaaa catcggagac agagtgtggg tgaagttaca      4920
     ccacctgtcg aatgcggcag aaggattcgc ggcgaagcta gcaccgagat acgggggccc      4980
     gtaccagatt gtggatttta cctcacccgt aatatgcaag ataaagggca taacggacag      5040
     gcggataagg acagcacacg tgagcgacct gaagccgcac aacgaccgga aggatacggg      5100
     tgagcctgaa aattcaaaac actaaatttt gccaaaaatt ccaatcaata taacagcgcc      5160
     gtaggtcaca tttttttctt tccctacata aaaagagggg gaaaataaat gtggtcttat      5220
     acatatatga cacatttata aatatatata aaaataatta aatataagcc caaaggaaag      5280
     ggtataaaaa taattcaata taaacccaaa ggaaagggta taaaaataat tcaatataaa      5340
     cccagaggaa agggtataaa aataattcaa tataaaccca aaggaaaggg tataaaaata      5400
     attcaataaa aacccagagg aaagggtata aaaataattc aatataaaaa aaaaaaaaaa      5460
     atgtgtaact acatatatac gagtatgtgt ataaataatg ttggaattga tgtaaataca      5520
     taacagcgcc ccaaggcggg cccaaaaatc caaaaaaaac aaaggcggcc ctgagcaagg      5580
     cgaataaaca aaacaattac gctgatcagc cttacatcgg gagagcgaaa agggaaacat      5640
     gcaaagagag cgcatggcca tgacctacgc atcgaccgca gacgtacgag ataaagatca      5700
     acggccgcca aaaacttttg ctcagcaacg cgcttgcaaa tcaaaaatgc aacaacaatg      5760
     cgggagcgag cgcatatgta cgcgcaaggg aaatggaaca tgcaaagaga gcgcatgacc      5820
     atgacctaca aacgaccgca aacgtacatg ctagagagca acggccccta aaacgttcgc      5880
     tcagcagcac gcttgcacac aaagtgcaac gataatattt gagcgagcgg acakgcacac      5940
     acagcgaaaa aggtcaacgc acccgaaaat taatcagctg cgcgtttgcg cacaaaaggg      6000
     caacaataat ttagcacatg caccgttggt tactcaccca cactagacat atgcgtgtac      6060
     acgatgcacc gttggttact cactaatatt agcacagacg cgtgagatgc acacccgaag      6120
     ggcaaagggg gggaattttt ttgggtaacc atgacctaca ctcgaccgca aacgtacgag      6180
     ctaaagccca acggccacca aaacttttgc ttagcaacac gcttgcacgt aaaaaaaaaa      6240
     aaaaaaaaaa tgcaataaca atgtgggagc gattgcaaat gtacgcgcag cgaagagtga      6300
     atcgcaccga aaactaatca gcagcgcgct tgcgcacgaa aagggcaccg ttggttagtc      6360
     accaatatta gcgcagacgc gtgagaggcg tacccgaagg caaaagagag gatttttttt      6420
     gcgcaggcgt gcgcccgaag ttcaagataa gctcagctct tatactagtg cttaggcgcg      6480
     tgcattagaa tagtgagaat atgcattaga gctttgcgaa agagaattcg ggcatcgcga      6540
     tcaacacacc cacacgcaca cgccccaaaa gggtatataa ggcagaagca gccacgcact      6600
     cagcttcttt ggaaaaaaaa aaaaagggaa gaaaattata aaaacacaag cagcatcaca      6660
     atggaggctc aacaaaattc catgctggac agcagcgtgt cggcagcagg tcaccgccgc      6720
     gcctcggacc caaatccctt tggccggccc agcgaagctg gcgtcccgtg cgacgaggga      6780
     gccggtccgg gtgcgcgcgc ggctagcgat cgccggccgc gacgcccagt gggacgcgga      6840
     gtacgcctgg tgcgcgaagt gcgcgtggtg cgcgtggtgc gcgtcgagag acgccgagtc      6900
     ctgcgtcgca tcgcgcagga gatgcggaac cggcggagcg acgagctcga gctgctggcg      6960
     tcgccgctac acctccccag cgacgaggaa ggaggggcat cgccgccaaa cgcccccagc      7020
     atgggagaag atccggtgga ggacgcagtc ccggaagcca acgaggaggc ccagccacga      7080
     cgccgacgct atcctagcga aatggacgag gtcaatccgg aatggctccg ttggcagtac      7140
     ccggaactgc ccccgacacc ggaggccgac accaccgacg aagaggagcg catgctcaca      7200
     tcgtcggagg acgacgagga gtggcgggca tcgacgtctc cggcgatctc ggacgacgag      7260
     gaggcgatgc cgtggccaca agagacgccg gagccggagg tgatcacgat ctcagacgag      7320
     gaggaggaca ctggcgagga gcggtggtca tcaccgtctc cggtggtctc ggacgacgag      7380
     gagacgatgc cgtggccacc gggtgacgcc ggagccggag gtgatcgtga tctcggacga      7440
     agaggaggag gaagagcagc ccgacgatgg aggagaggcg caggggcagg gtgaacgccc      7500
     gcaaatcccg ccacccaccg tgaccgccac ctacgcgagg gccttcgcgg acggccgctg      7560
     gaggcaccaa gtaaccctgg tgtgcgtctg ggaggaggag gcgggggtgc cacccacctg      7620
     gcagctggag gaagaacacc cccccgcagg ccctaacccc ccgcagcgac aacggagccc      7680
     aacaccgccc gccgcgagat cgccaccacc cccgccgccg gagtggagac cgccattcct      7740
     gcgccaggcg tcgtgccccg aggcgggacc ccgacccacc cgaccgacgc tccagcgaca      7800
     aagctcggct ccggaaggag aggctggatg gcaggagctg ccaccgccgg cttggccacc      7860
     tggcatcacg gcgatggccg atgcccagcc gggaccaagc cggcgggcgt ccaggatcgt      7920
     gtggcaggag gggcaccgct atcgagtgaa gacctcgatg cggggcacgc gcgtcttccg      7980
     caaggtcgag cggcatgaga aagaaaaaaa aaatatatat aaaacaaaat aaaaaaaaaa      8040
     aaaaaaaata taaaaaaatt agaattatta gttgcacaca caataaaaca aacataaccc      8100
     cttcaaacag tatatattct ctatttacat ttttaggccg ttgtctctcc ttaggttgga      8160
     gagcggaagc tttccgctgc cgaagaaaga ggggag                                8196
//
ID   Gypsy-1_DG-LTR repbase;    DNA;    INV; 610 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DG_;
KW   Gypsy-1_DG-I; Gypsy-1_DG-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-610
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1276-1276 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 610 BP; 185 A; 148 C; 153 G; 124 T; 0 other;
     tgtgaggagc catagaagca tgcacttgtg agcatgcata tatgtgtatg tttgtgatta        60
     taaacatata tatatatgta tgttcacgaa tgggcataca aaatgcccgt aagcatgtta       120
     tatgcgccct cacaacaact gtccattcag accgaaaacc ggccctgatg cagttgcggc       180
     gaattcgctc tctttcgccc tctccctttc taacgcgggc gttcagccgt ttgaacgtgt       240
     ctgacacaca tgtccatcag gacatgtgcc gttagtgtgg gaagagtatt gcgagaacaa       300
     tactgttgtc catactcaca ctgacggcag acaatggctg gcgccagcaa aagggcagtg       360
     gaaaagtacc agaaaatcac gccaccaaaa gatcacgcca ccaaagatca cgccaccgag       420
     gtacagtccc ggcaaaaggt ggccagccac ggcctataaa aggagcgccg ccgcataagg       480
     cggggctgtt cgattaaata cgcgagaaag tgaacacgct gtgaagtaaa caagctgtgc       540
     aaataaagca agagaggctg cgcgcatata cacggagcga atatatgtgc gagtgaaagc       600
     cagaacacca                                                              610
//
ID   Gypsy-1_DGri-I repbase;    DNA;    INV; 5609 BP.
XX
AC   scaffold_15203;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DGri_;
KW   Gypsy-1_DGri-LTR; Gypsy-1_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-5609
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_15203; Positions 1877810 1883418.
XX
CC   Positions [4698-5174] - Integrase core
CC   'AGCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           711..2042
FT                 /product="Gypsy-1_DGri-I_2p"
FT                 /translation="MAVRRSAEDLRSATPIEPGLCTICNDTRSDSEFVETP
FT                 CKHKFHRWCLLEWFLSSESCPVCRQYCSKIMIQIRESTTTDTNTPSGKDQT
FT                 SITKASSGAIPKTGVNTRSTSRNKPNTNVRPNPNLNTKRDLPRPKVTSESN
FT                 IISEERIQQLIANSLDTFKASMTAAMTEQLSAAVRSLSLSTQPRETRDEGH
FT                 LDWENDIVPPRPRLSNSSNSRNNSNQRPGNCYASANVGDGVVEHPERISNV
FT                 ISNWRIKFSGLANDIPIEDFIYRVNCLTSQCLNGNFHLLVQFAHLLFTGPA
FT                 LSFYWRVHRSAVHLNWFELCNRLQERYKDQRTDRDIKDAIRRRKQGNNESF
FT                 DDFLDAILSIADSLREPMLDTDLTIEVRHNLKTELKHELLHVETRDLASLR
FT                 KECHRHEDFFRSLNSRQQPRVNVNRRLLFSTNKFQELNRKRKLMQLMKSV"
FT   CDS           2440..3723
FT                 /product="Gypsy-1_DGri-I_1p"
FT                 /translation="MRKFWQSKRALNRCLINSIVNKSNDIRPFINIDIFGQ
FT                 DYLALLDSGANKSVIGGYLAKRVLSENFNVDKSKGVVRTADGQTHPVAGTI
FT                 TIPLTYNSTQADLEFLIVSSIRTDVICGMDFWKKFGISISSFGDINVSAIE
FT                 TEKLEDDSTKLDLSSFQKSKLKAVIDFFPSFENNGLGITTLIEHTIDTAEA
FT                 KPIKQRFYPLSPAKEELLCKEIDRMIQMDVIEEAPSSPWSSPITLHIKPGK
FT                 VRFCLDARKLNAVTIKDAYPIPIMAGLLSRLPPVYCISKIDLKDAFWQICL
FT                 DKESRAKTAFTVPNRPLYQFKRMPFGLTNAPQTMSRLMDLVIPYQLKSNVL
FT                 VYLDDLLVLSDSFESHLLHLSEVATQLRKAGLTINVQKSQFCLRKVEYLGY
FT                 IVGEGTLQVNPEKVRPLKSFRFRKLGSSSDDSWE"
FT   CDS           3723..5528
FT                 /product="Gypsy-1_DGri-I_3p"
FT                 /translation="MTGWYQRFISRYSSIIFPLTELLGKNLFTWNDQAQTA
FT                 FEEIKMALCSAPCLVHPQYDKPFIVQCDASSYAVGAVLAQCDESGHERPIA
FT                 YMSKKLNKAQRNNTVTELECLAVVLGIRKFRMYIDGHRFTVVTDHASLRWL
FT                 MDQPDLSGRLARWAISLQGYGFSIEHRKGSQNVVADALSRSFESVVEVASL
FT                 NAEVLPEVDLQSEAFQSAEYCALRDKFKVSKMPDYQVIDGYIYHRKDFSDD
FT                 SSYQGNDSWKLLVPESLRNSVICSAHDQPSSAHCGTAKCLERIRRHLYWPR
FT                 MVVDVRNYISDCDTCKITKYPNRSLKPPMGARITSERPFQRLYFDFVGPFP
FT                 RTRKGHIGIFIILDHFSKFTFLKPVKKFTSNVIIDYLSENIFPCFGVPEIV
FT                 VSDNGTQFKSRVFDDFLLTFGIQHIFTGAYSPQSNAAERVNRSINAALRAY
FT                 IRVDQREWDTFLSRINSSLRNSIHQSIGYSPYFMVFGQHMISHGKDYKLLR
FT                 NLELLKDSTARLPRADEFQKFRADVDKHLKKAYDRNQRSYNLRSQTRAFEI
FT                 GQEVIKRNFSLSKAAANFCSIGTKARIKGKLGRSIYLLEDMNGKELGNFHA
FT                 KDIW"
XX
SQ   Sequence 5609 BP; 1663 A; 1170 C; 1129 G; 1647 T; 0 other;
     caataattgg cgcccaacgt ggggcccgac cgattggtcg tttccgaaca aatcccgacc        60
     gattggtttt ttttcactgt atgtatcact gctaggataa tctttattat cctaagttaa       120
     ggtgaacacc ccgcgcttcc caaattacct ttctacattc cttttctcga aacaatattc       180
     cacccatatt atattttgca attaaatccg tacggtactt tctgtttact tcggaaatgc       240
     tggaattctg attattgtcg gagccagacc agtagacaga gtagttccag aaagttgatt       300
     tcattttaga gtctctttct aacgaaagaa aatttctaga catttaatca attcttttgt       360
     ttaatctcga attgcgttgg aattttagtt ctgatttcag tcggtcctaa accaggcaat       420
     cgatatttaa ataataattt atattccgga cctaaattga gatttgctca gactggagtc       480
     tttcggcctg ttcctcttta gattgggtaa tatacactct tatatatttt atagtaaatt       540
     ctgtgtacga gtctgatatg tttatacgcc gtcaattata cctgcggtgt cagacctttg       600
     gataagtcct tattaattat tcagcgttta tttcgatata gtaaatttcg tcactttata       660
     tatctcactt ttccgaccac aaaaccagtt taccgacatt ttattttgct atggctgtca       720
     gacgtagcgc agaagattta agatccgcaa cccctattga acctggctta tgtacgattt       780
     gtaatgatac caggtcagat agtgaatttg tagaaacacc ctgtaaacac aagtttcaca       840
     gatggtgtct attggagtgg tttttgagca gtgaatcatg ccccgtgtgt aggcaatact       900
     gttccaaaat catgattcaa ataagagaaa gcactacgac tgataccaat accccgtctg       960
     gtaaggacca gactagtatc acgaaagcga gttctggagc gattcctaaa actggtgtaa      1020
     acaccagatc gacttcacgc aataaaccga atacgaacgt ccgaccaaat ccaaatttaa      1080
     acacaaaacg tgatttgccc cgacctaagg ttacatccga gtctaatatt atttcggaag      1140
     agcgtatcca acaattgatt gcgaattctt tagatacctt taaagcgagt atgactgcag      1200
     ccatgacgga gcagttaagt gcagccgttc gaagtttgtc attgtctacc caacctcggg      1260
     aaactcgtga tgagggtcat ctcgattggg agaatgacat agttccaccc cgtccacgtt      1320
     taagtaattc cagcaatagt cgaaataaca gtaatcagag acctggaaat tgttacgcta      1380
     gcgcaaacgt aggggatgga gtagttgaac atcccgaaag aatttcgaat gttatttcca      1440
     attggcgaat caagtttagc ggattagcta atgacattcc aattgaagat tttatatatc      1500
     gagtaaactg tttaacctct caatgtttga atgggaattt ccatctactg gttcagtttg      1560
     ctcatctcct tttcactgga ccagccttat ctttctactg gcgcgttcat agaagtgcag      1620
     ttcacttgaa ttggtttgaa ctgtgtaacc gcttgcaaga gagatataag gatcagcgaa      1680
     ctgatcgcga catcaaagat gcaattcgtc gtcgcaaaca aggcaacaac gaaagctttg      1740
     atgatttttt agatgcaatt ctgtcgattg ccgattcctt gcgtgagcct atgttggaca      1800
     cagacctaac gatcgaagtc agacataatc tcaaaactga actaaagcac gaattgttac      1860
     atgtcgaaac tcgtgattta gcaagtctgc gaaaggaatg tcatagacat gaggatttct      1920
     ttcgtagtct taattcaagg cagcagcctc gagtaaatgt gaaccgacga ttactgttct      1980
     ccacgaacaa attccaggag ttgaatcgga agaggaaatt aatgcaactg atgaaatctg      2040
     tgtagttcga tcccccgaaa aatgtatatg ctggaattgc gaggaacagg gtcacagata      2100
     ccaagattgc ctgaagcatc gtcggatttt ttgttacggt tgtggcacac ctgagacata      2160
     caagcccaac tgtcaaaaat gtaatcccaa atcggaaaac tcgacgaagg atgtccgccg      2220
     tgttccgaaa ggggatgtcc gatattagcc tcggatccac aaaatgttca aacagctatt      2280
     tctaaacaac taccagacca atcaccttta accccggaat tacctagtct cttgcgattt      2340
     aagccatacc atgtgcgagt tcatgagtac gagaagcgta cgtccgaaat atttaacgcg      2400
     gatgaattac tttcatgtaa atctcgttct tctttacgta tgcgaaaatt ttggcaaagc      2460
     aagcgagcac taaacagatg tttaattaac tctattgtta ataaaagcaa tgatattcga      2520
     ccttttatca acattgacat ttttggtcag gattacctag ccttattaga tagcggggcc      2580
     aacaaaagtg tcattggcgg atatcttgcc aagagagttt tgtcagaaaa ctttaatgtt      2640
     gacaaaagca aaggcgttgt tcgcacggcc gatggccaaa cacatcctgt tgctggtaca      2700
     attaccatac ccctgactta taattcaacc caagctgacc ttgagtttct tatagtttct      2760
     tccattagaa cagatgttat ttgtggtatg gatttctgga agaaatttgg tatatcgatt      2820
     tcatcttttg gcgatattaa tgtttcggcg atagaaactg aaaagctcga agatgactct      2880
     actaaattgg atttatcgtc attccagaaa tccaaactaa aagctgtgat tgatttcttt      2940
     ccatcttttg aaaataatgg acttggcata acaacgttaa tcgaacatac aatcgatact      3000
     gccgaggcga aacccatcaa acagagattt tatcctcttt ctccagcaaa agaagaactc      3060
     ttatgcaagg agattgacag gatgattcaa atggacgtta tagaagaggc cccaagttct      3120
     ccttggtcat ctcccatcac cttacacata aaaccaggca aagtgcgctt ctgtctcgac      3180
     gcacgaaaac ttaatgcagt cacaattaag gatgcgtatc ctattccaat aatggctgga      3240
     ctgctgagtc gtcttccgcc tgtatactgc atttcaaaaa tcgacctcaa ggatgccttt      3300
     tggcaaatct gtttagataa agaatcccgt gctaaaacag cgtttacagt cccaaataga      3360
     cctctttatc aattcaagag aatgcctttt ggattgacca atgctccgca aacaatgagt      3420
     cgtctaatgg acttagtaat tccatatcag ctaaaatcaa acgtattagt gtaccttgac      3480
     gatttgctgg tattgtccga tagttttgag tcacatcttt tgcatctttc agaagttgct      3540
     actcaattgc gaaaggctgg ccttaccata aatgttcaaa aaagccagtt ttgtcttagg      3600
     aaggtagagt atctaggcta tatagtaggc gaaggaacac ttcaggttaa tcccgaaaag      3660
     gtccggccgt taaagagttt ccgattccga aaactcggaa gcagctcaga cgattcttgg      3720
     gaatgactgg atggtaccag cgttttattt ccagatactc ttcgatcatt tttcccctta      3780
     ccgaacttct aggtaaaaat ttgttcacct ggaacgatca agctcaaact gcattcgagg      3840
     agatcaaaat ggcattgtgc tcagctccat gtttggtcca tccacaatat gacaagccgt      3900
     tcatagtgca gtgtgatgct tcttcgtatg cagtaggtgc tgttcttgca cagtgcgacg      3960
     agtccggtca tgaacgccca atagcgtaca tgtcgaaaaa attgaacaaa gcacaacgta      4020
     acaataccgt tacggaattg gagtgcttgg ctgtcgttct gggtattaga aaatttcgca      4080
     tgtacatcga cggtcatcgt ttcacggtag tcaccgatca cgcaagtctt cgatggttga      4140
     tggaccaacc tgaccttagt ggtagattag ctcgatgggc gataagtctc caaggttacg      4200
     gcttcagtat tgaacaccgc aaaggaagcc aaaatgtggt agctgacgcc ctatcccgtt      4260
     cgtttgagtc agtagtcgag gttgcgagcc taaatgctga agttctaccc gaagtggatc      4320
     tgcaatccga agcatttcag tcagcagaat actgtgcttt gcgagataaa tttaaggtat      4380
     cgaagatgcc agactatcaa gtaattgatg gttacattta tcatcgcaaa gatttctctg      4440
     acgatagctc ctatcaaggc aatgattcat ggaaactgtt agtgcccgag tctttgcgaa      4500
     acagcgtcat atgttcagct catgatcaac catcttccgc acactgtggt accgcgaaat      4560
     gtcttgaacg aatacgacgt catttgtatt ggcctaggat ggtggttgat gtgcgtaatt      4620
     acattagtga ttgtgatacg tgtaagataa ccaaatatcc caatcgatca cttaaacctc      4680
     ctatgggtgc tcgaattacc agcgaaagac catttcagcg gttgtatttt gacttcgttg      4740
     gtccgtttcc tcgcacaaga aagggtcaca ttggaatttt cataatttta gatcactttt      4800
     caaaattcac ctttctaaag cccgttaaaa aattcacctc caacgtgatt atcgattacc      4860
     tgagtgaaaa tatatttcca tgttttggag taccagagat agtcgtgagt gacaacggta      4920
     ctcaatttaa aagccgtgtc tttgacgatt tcctcctaac cttcggtatt caacatatat      4980
     ttacaggagc ctattcacca caatcgaacg ccgccgaaag agtgaatcgt tcgattaatg      5040
     cagctttaag agcctatatt cgtgttgacc agcgcgaatg ggataccttc ttaagtcgca      5100
     ttaacagctc ccttcgcaat tctatacatc aatcgattgg ttactctccc tattttatgg      5160
     tctttggaca acacatgatt tctcatggca aagattataa attattgaga aatttagaat      5220
     tgctaaaaga cagcaccgct aggctaccca gagctgacga atttcagaaa ttcagggctg      5280
     atgtagataa acacctcaaa aaggcttatg acagaaacca gcgatcgtat aatttacggt      5340
     cacagacacg agcatttgaa ataggtcaag aagtgatcaa aagaaatttt tctttaagca      5400
     aagctgcagc taatttttgc tctatcggca ctaaggctcg aatcaaggga aaactgggcc      5460
     gatcgattta cctcctagag gatatgaatg gaaaggagct aggaaatttt catgcaaaag      5520
     acatttggta gccagcactt cctattcgca tccgtttgaa tttttttcag ctcttatctt      5580
     tctctaatag aagtagatca gacctgtgg                                        5609
//
ID   Gypsy-1_DGri-LTR repbase;    DNA;    INV; 1503 BP.
XX
AC   scaffold_15203;
XX
DT   08-MAR-2011 (Rel. 16.03, Created)
DT   08-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DGri_;
KW   Gypsy-1_DGri-I; Gypsy-1_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-1503
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
DR   Genome; scaffold_15203; Positions 1876307 1877809.
XX
SQ   Sequence 1503 BP; 458 A; 326 C; 293 G; 426 T; 0 other;
     tgtgacggcg cgaatattca gcttgcaatt ttcaaaacac tgcacaaaac atgcacatta        60
     gacttaagca gctggtctag atcagctggt gcagcttatg gtgcgttaga gagctttcga       120
     acgcgaactt tcgctcttaa tctttctaac gcgaactttt gctcttgaac tgtcaagttg       180
     gctgcgcctg cgtttctgaa tgcatttcat tcttccgcat gctatcgatg caagaagcaa       240
     cagcagatcg gtgccaagaa aagttttctg tttgttttac gtgacaattt gcacgtggtc       300
     aaataaatac aatcggcaaa catccgaagc tgggataata tttaaagtgc gatattacgg       360
     ataccagaac gctgaagacc ggttataccc gacagcagtc gaatttaata aaatttcgac       420
     tcattaccgg gattttggca gttcacgtgt ttcgagtgtt gggtggacct gcaagcacac       480
     cacatccaat cattgcacca caccacaata caccattgac cacggaactg gccacccaag       540
     ccccttcgtc tattcttata cctcattatt ttgttgaaaa ataaaatcaa gccgacttca       600
     gcagagaagc gttgccagcg cctattcagg gctgctcaac gcctctcaat acaacaacaa       660
     taagaagaac aactacaaca acacaggaac aacaaccccg gtgtcttgaa gtcaccgcat       720
     agcaggcata gagtataaaa aaaaaaggaa aaaaatgaat tttagttcta agtaatatta       780
     tactccatac ttataaattt gtaaaatatt ttctagtgag cgctttgtat ccattttgca       840
     cctttgactc taattatcac cgcctacaga tcgtctacgt cgacaggcct gctgacatcg       900
     atggatcgct aaggatgata tggtagtaag tacggcgtag ccggacgtga tggcatcaga       960
     gatgcaatat tggtaactaa agcgcccata gaattttgtt ggtattgtat tgatattcct      1020
     aatagtataa aattaataag agtataatag tatcagagcc acaatttata atgaagttac      1080
     aatgtcctta ttgaattcca ctatcatgaa tagtccttgt atttaactta attcaattat      1140
     agaaatataa acatgggata atttgttatt attaaaggca ccttaggtct gtagcaccgc      1200
     aagcttcata gggtaggatc caaaattgca atagattcct acaaggttgg gtgggtaaag      1260
     aaggagaact ctaacaactt atctccttct ttagataggc tgtataagca acatcagtcc      1320
     gttccatttg tatggctcgc attccttatc ccgttcttcc cgttcttccc tgtctacgaa      1380
     attattactg tagcaccgtt tgtttaggcg gcacaatacc cacgcccaat ttccctgagc      1440
     aaggccgccc caaatagtag acagggtgtg caagccgaga cgacattgtt agtgttcgtt      1500
     aca                                                                    1503
//
ID   Gypsy-1_DHyd-I repbase;    DNA;    INV; 6386 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6386
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2397-2397 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..1711
FT                 /product="Gypsy-1_DHyd-I_1p"
FT                 /translation="MPRFSQYRSPREQSSDSDSDCDTRIRVPSTRLIPAVP
FT                 PPSDRMDPDQLREVVRTAISNALAEQAAANQQREQALTQRINELAKQIAAT
FT                 SFATPQVVAYSAIEIRNDIHCDEPLDAVKCLPEFAGAQESYVSWRQAALAA
FT                 YEIFRPHNGSSRHYQAVIIIRSKIRGPADAVLASFGTVLNFDAIINRLDFT
FT                 YSDKRPIHVIEQELGTLRQGGLSLLQYYDEVEKKLALLTNKVNMSYEPALA
FT                 KGLCEKFRDDALRVFISGLKRSLTDVLFAAKPRDLPSALALAQEVESNHER
FT                 YAFAANFAKSLEDKERKPHAKAQGHQQERHSQQAETQASGTKNPHFSKQSR
FT                 APVQSDQRSSRQHNNNGAPVPMEVDPSFSRVLQPTQAPAYANRKHPASDRT
FT                 SGQRNQQRLNHVTQDVGQGAEAYADAASSAAAQINDDSYDSEALNFLGANP
FT                 CYPSSDEE"
FT   CDS           1726..4764
FT                 /product="Gypsy-1_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MRFLIDTGAAKNFIRPHEGLKGVRSVESPFKIHSIHG
FT                 ETQITHKCFVSMFGLKATFFILPDLSTFDGIVGLDLLKQAAASLCLASGQL
FT                 KWGTEVEQITFHTCKNVNFTNVDCAEASPLARSSFLKMLKARQKAFADPDE
FT                 ALPYNTSVVATIRTTDEQPIYAKLYPYPMGAADFVNKEIKDLLKNDIIQKS
FT                 VSPYNNPIWVVDKKGTDEAGNRKMRLVMDFRKLNERTVPDKYPIPNISMIL
FT                 GNLGRAKFFSTLDLKSGYHQIILAERDREKTAFSVNGGKYEFKRLPFGLKN
FT                 AASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDEESHIKHVDWVLKSLFE
FT                 ANMRVSVEKSRFFKKSVNFLGFIVTSTGATTDPEKVRAIQEYPEPKTLFEV
FT                 RSFLGLASYYRCFIRDFAAIARPISNILKGENGTVSKHRSRNIKVQFSEVQ
FT                 QRAFQKLRDILSSENVMLRYPDFKKPFDLTTDASAHGIGAVLSQEGRPITM
FT                 ISRTLKDSEVNYATNERELLAIVWSLAKLRHYLYGVKDINVFTDHQPLTFA
FT                 VSESNPNAKIKRWKARIDESNARIFYKPGKDNLVADALSRQQLNAVNEQEI
FT                 ESCAATIHSEVSLTNTIETTDKPLNCFQNQIVIEEARFPLKRSFILFGNKK
FT                 RHLVNYTCVESLLDELEDVVSPKCVNALHCNLHTLAMIQDTLVRRYPATKF
FT                 WHCKNRVVDVLAVGERREILTAEHNRAHRAAQENIKQVLSEYYFPKMAKIA
FT                 NEIVLNCKTCARAKYDRHPKKQEIGETPIPSHVGEMLHIDIFSTDRKYFLT
FT                 CIDKFSKFAIVQPVPSRTIVDLKPALMQLMNFYPKARSIYCDNEPSLNSET
FT                 IVTMLANNYGVSISNAPPLHSISNGQVERFHSTLLELARCLKIDKGISDTV
FT                 EVILLATTEYNKSIHSVIDQRPVDVVQAQPDEPQEKIQEKIRNAQMTLRAR
FT                 ENANRQNRVFDVGDKVLVKSNRRLGNKLTPLCDEKAVDADLGTEVLIRGRV
FT                 VHKDNLR"
FT   CDS           5128..6384
FT                 /product="Gypsy-1_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="MFPLSHMKKLLSVDTVHLQDLLEALGTHHRVARSLDF
FT                 LGSILKVVAGTPDARDLEQTRFTERQLVNANNRQIEINTRVQDQLNQLTFT
FT                 VNKILKIAKNSQVDTSHLFETLLSRNRMLVMELQNLMLAITLAKANIVSPN
FT                 ILDHSDLKSIWLEEPTNTPIGDLMSVASVKVLQSINTIHFIIKFPKIKQAC
FT                 RKITIYPVIHKNFILRLPDNVIAECDGKTHTLQSCTASPGATFCRLALESS
FT                 CAKELHAGGTAHCEIQPSNLEIITHVDDGIIILNDGSARIQVDNGTEIQVH
FT                 GTHLITFGDRVAINGTLFYNHNNVRNRVPGIANSPLLNITASQDVLSLPYL
FT                 HRLNERNLEEIQQFKKDAGTDQAYRVAFIIGGICCALICIGLTLWRFIDAR
FT                 KSAKQLREVVAGIGSAEGGLTLEGG"
XX
SQ   Sequence 6386 BP; 1996 A; 1430 C; 1405 G; 1555 T; 0 other;
     ggcgcccaac gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa        60
     aaattttttt ttttttttgg aatttaaatc atgtaagtgg atactccagc caacattttt       120
     tttcaaacac aaaatttctt aaatttactt tataaaaaat ttgttagtac tagtgagtat       180
     ttcgtattgc aacagattag attataataa tcagaaccaa gtttctgaaa tacgtgagag       240
     tggctgctct gagaatttag gctgataaaa atacttagtg ttactttcta tgtgtctaat       300
     tcgacccatc ttttgacggc ccgtttaatt tttcgcggcc actggcctgc gcatgccacg       360
     gttcagccaa tatagaagcc ctcgcgagca atctagcgac tcagattccg actgtgacac       420
     tcgtatcaga gttccgtcta caagacttat accggcagtt cctccaccat cagatagaat       480
     ggatccagat cagcttaggg aagtagtaag aacggccatc agcaatgcct tagccgaaca       540
     ggccgctgca aaccagcaga gggagcaagc attgactcaa agaattaatg agttagctaa       600
     acaaatagca gcaacaagct ttgccacccc acaagtagta gcatattctg ctatagaaat       660
     tagaaacgat attcactgtg acgagccgct agatgccgtc aagtgcttac ctgagttcgc       720
     aggagcacag gaatcttatg tatcttggag gcaggcagca ttagccgctt acgagatctt       780
     cagaccacat aatggcagtt ctcgtcatta tcaggctgtc atcattataa gaagcaagat       840
     taggggcccc gcagacgcgg tgctggcctc atttggtact gtactgaatt ttgatgcgat       900
     aataaatcgc ctagatttca catacagtga caagagacca attcatgtca ttgaacagga       960
     attaggtacc ttgaggcaag gtggcctgtc cctgcttcaa tattacgatg aggtggagaa      1020
     gaaactcgct cttctcacta acaaagttaa catgtcatat gagccggctt tagcaaaggg      1080
     cctatgtgaa aaattccgcg acgatgcgtt gcgtgtgttc atatcgggtc tcaagcgcag      1140
     tcttacagac gtgctctttg cagcaaagcc cagagatttg ccttcagcac tagctctcgc      1200
     acaagaagtc gagtcaaacc atgaaaggta cgcattcgcg gctaacttcg caaaaagtct      1260
     agaagacaaa gagcgcaagc cgcatgcaaa agcacagggt caccaacagg agaggcattc      1320
     gcaacaagcc gaaacacaag ctagcggtac aaagaatccg cactttagca agcaaagcag      1380
     ggccccagtg cagtctgacc aacgaagcag caggcagcac aataataatg gcgcaccggt      1440
     gcccatggag gtcgatcctt ccttctcaag ggtcttgcag cccactcagg cccctgctta      1500
     cgcgaatagg aagcaccccg catctgaccg cacaagcggt cagaggaatc agcagaggct      1560
     gaatcacgtc acacaagacg tgggacaggg ggcagaggcg tatgctgatg ccgcctctag      1620
     cgcagcggca caaatcaatg acgatagtta tgactctgaa gccctcaatt ttttaggagc      1680
     aaatccctgc tacccgtcat cagacgaaga gtagcaggga ctgacatgcg attcctcata      1740
     gacacgggcg cggccaagaa tttcattcgg ccacacgagg ggttgaaagg cgtccgctcg      1800
     gtagagtccc cctttaaaat tcattccatt cacggcgaga cacaaatcac acacaaatgc      1860
     tttgtttcaa tgtttgggtt aaaggcaacc ttttttattc tgccggactt atcaactttt      1920
     gatgggattg taggccttga cctgctaaag caggcagctg cttcgctttg tctagcttca      1980
     ggacaactta agtggggtac ggaggtcgaa caaatcacct tccacacgtg caaaaatgta      2040
     aatttcacga atgtagactg tgcagaggca tcccctttag ctagaagttc ttttttgaaa      2100
     atgctaaaag ctagacaaaa ggcctttgcg gacccagacg aggcgttgcc gtataacaca      2160
     tcagtcgtgg ctaccattag gaccacagat gagcaaccga tctatgccaa gctttaccca      2220
     tatccaatgg gagcagctga tttcgttaac aaagaaatca aagatctgct aaaaaatgat      2280
     ataattcaaa agtccgtctc tccctacaat aacccaatat gggtagtaga caagaagggt      2340
     actgatgaag caggcaatag gaaaatgagg ttggtaatgg actttcgtaa acttaacgaa      2400
     agaaccgtgc ctgacaaata ccctatacca aatatatcaa tgatattggg gaatttggga      2460
     agagccaaat tcttttcaac attagacctc aagtctggat atcaccagat catactcgct      2520
     gaacgcgacc gtgaaaaaac cgctttctct gtgaacgggg ggaaatacga gttcaaaaga      2580
     ctcccctttg gattaaagaa tgcagcaagc atcttccaaa gaaccatcga cgacatactg      2640
     cgagagcaga ttggcaaatt ctgctatgtt tatgtcgatg acgtaatcat cttttcagaa      2700
     gatgaggaat cccacattaa acacgtggat tgggtcctaa aaagcttatt tgaagcaaac      2760
     atgagggtct ccgtcgaaaa atcacgtttt tttaagaaaa gcgtgaactt tcttggtttc      2820
     atagtcacca gcactggcgc cacgacggat cccgaaaagg ttagggcaat acaagagtat      2880
     ccagaaccta aaacactgtt cgaggtcaga tcatttctag gcctcgcaag ttattacaga      2940
     tgtttcatta gggacttcgc cgctatagca agacccatct cgaatatctt gaagggtgaa      3000
     aatggaacag tcagtaaaca taggtccaga aatataaaag ttcaattctc tgaagtgcag      3060
     caaagggcgt ttcagaaatt gcgcgatatt ttgtcatccg agaatgtaat gcttaggtac      3120
     cccgatttta agaagccatt cgatctaacg accgatgctt cggctcacgg cataggtgca      3180
     gttttgtcac aagagggtcg tcctataaca atgatttcaa gaacattgaa ggacagcgag      3240
     gttaactatg caacaaatga gagagagtta ttggccatcg tatggtcact tgccaagtta      3300
     aggcactatt tgtatggggt gaaagacatt aatgtcttca ctgaccatca acccttgacc      3360
     ttcgcagttt cggaatccaa tccaaatgcg aagatcaaaa ggtggaaagc gcgcattgac      3420
     gagtctaatg cacgtatctt ctataaacct ggcaaggaca atctggttgc ggatgccttg      3480
     tcaagacaac agctcaacgc tgtaaatgaa caagagattg agtcctgcgc agcaacgatc      3540
     cacagtgagg tatcacttac caacaccatc gagacaacag ataagccctt gaactgtttt      3600
     caaaaccaaa tagttataga agaggcgcgt ttccccttaa aacgaagttt tattcttttt      3660
     ggaaataaga aacgccactt ggtcaactat acttgcgtcg aatcgctgct agacgagctc      3720
     gaagatgtag tttcacccaa atgcgtgaat gctctccact gtaatttaca cacgcttgca      3780
     atgatacaag atacattggt tcgaagatac ccggccacaa agttctggca ctgcaaaaat      3840
     cgcgtagtgg acgtattggc agttggagaa agaagggaaa ttctcacggc cgaacataat      3900
     agggcccata gggctgcaca agagaatatt aagcaggtac tctcggagta ctactttcca      3960
     aagatggcaa aaatagccaa tgagatagta ctaaattgca aaacatgtgc tagggctaaa      4020
     tacgatagac accccaaaaa acaagagatt ggggaaactc cgataccctc acatgtagga      4080
     gagatgttac acatagacat tttctccact gacaggaaat actttctcac ttgcatcgac      4140
     aagttctcta agtttgctat tgtccaaccg gtcccttcaa gaaccatcgt ggatctgaag      4200
     ccagcgttaa tgcagctgat gaatttttat ccaaaagcca gatccatcta ctgtgacaat      4260
     gaaccgtcat tgaactcaga gaccatcgtg actatgctcg caaacaacta tggggtcagc      4320
     atttcaaatg caccaccatt gcatagcatc tcgaatggac aggttgagcg ctttcacagc      4380
     actctcttgg agctagccag atgcctaaag atcgataagg gcataagtga cacggtagaa      4440
     gtcattttac tggctacaac tgagtacaat aagtcgatcc attcggtcat cgaccagaga      4500
     ccagttgatg tggttcaggc tcaaccagat gagccacaag agaaaataca agaaaagatc      4560
     agaaacgctc agatgacgct tagagctagg gagaacgcaa atcggcagaa tagggtcttt      4620
     gacgttggtg acaaagtttt ggtcaagtcc aaccgacgac tcggaaacaa actcacacct      4680
     ttatgtgatg agaaggccgt ggatgcagac ctggggaccg aggtcctcat tagagggagg      4740
     gtggtccaca aggacaacct aagatgactc ttgttttttt ttatttttaa gccactaggc      4800
     aaacttgtat aagttagata tagtttttca atttactttt agccacttgg catagttttt      4860
     attaaacatt tttggtggtg ggcaaacctt ttaaaaaaaa aaaggttgct aaaaagaaag      4920
     gaaacaacct tatttcacag gttgggatcc atagtactcc ttttcttatc agtggcttcg      4980
     gcacatgtca ccgactactc gcgtgccaag tacattccca tcatcgacgg cgaaatcttg      5040
     atatgggaag aatacgccta cgttaggcac tcggcaaacc tctcagaata cgtgcgaatt      5100
     gtggaagaaa cggtcaaatt aattgacatg ttcccgctat cccacatgaa aaaacttctg      5160
     agtgtggaca cggtacatct acaagaccta ttggaggcgt taggcacgca tcatagagtc      5220
     gccagaagtt tagatttcct agggtccata ctgaaggttg tggcgggtac acctgatgcc      5280
     agggatttag agcagactag atttactgaa aggcagctag taaatgccaa caatagacag      5340
     atagaaataa acactagagt tcaagaccag cttaaccagt tgacattcac tgtcaataag      5400
     attctcaaga tagccaaaaa ctcacaagtt gacactagcc atttattcga gacactattg      5460
     tctagaaata gaatgctggt aatggagttg caaaatttaa tgcttgctat tactcttgca      5520
     aaggctaaca ttgttagccc aaacattttg gaccactcag atttgaaatc aatttggcta      5580
     gaggaaccca ccaacactcc cataggagat cttatgtccg ttgcgtccgt aaaagtcctt      5640
     caatccatta acactataca ttttataatt aaattcccaa agattaaaca agcttgcaga      5700
     aaaattacga tttatcctgt cattcacaag aatttcatat tgcgattgcc tgacaacgtc      5760
     atagccgaat gcgatggaaa aacccacaca ctgcagagtt gcaccgcttc acctggagcc      5820
     accttttgtc gtctggcatt agagagttca tgtgccaaag agctccatgc aggtggcacg      5880
     gcacactgtg aaatccagcc gagcaacctg gaaataatca cccacgtaga tgatggaatc      5940
     atcattctta acgacgggtc cgcaaggatc caggtggata acggcactga aatccaagta      6000
     cacggcacgc atctcattac gttcggggac cgagtcgcga tcaacgggac tctgttttac      6060
     aaccacaaca acgtacgcaa tagagtcccg ggcattgcca actctccctt gctgaacatc      6120
     actgccagcc aagatgtcct cagcctccct tatcttcatc gtttaaatga acgtaatttg      6180
     gaggagatac agcaattcaa gaaagacgcc ggaactgatc aagcttatcg tgtggcattc      6240
     atcattggag gtatatgctg tgctttaatc tgcattggcc tcaccctttg gcggttcatc      6300
     gacgcaagga agtctgcgaa gcaattacga gaagtcgtcg ccggaattgg gtcggccgag      6360
     ggcggcctta cacttgaagg gggagt                                           6386
//
ID   Gypsy-1_DHyd-LTR repbase;    DNA;    INV; 585 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-585
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2415-2415 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites.
XX
SQ   Sequence 585 BP; 173 A; 135 C; 115 G; 162 T; 0 other;
     agttaacaca taacatttaa tatagggtat ttcataagtt tataatcaac cctcgctatc        60
     gcgtgtttcg taagttaaga aacagccctc gcaattgcga cactgcatac tttgtatcag       120
     cgcgctataa ctgcaatggt cagcggcggt aaccagatac ttttgtttac tgcaagagtt       180
     tccgttattg cctaagattg ctgagtcggc ttgccgacca tgacattgtg gtgtgatgcg       240
     agttttggct tagcttaagt gaaatattct atgtagctaa aaatcagttt tgcattgaag       300
     tttgaagaat aaacccgcac tactccggca caccgccgta atcaaattgt tatatttctg       360
     atcattgctg agccacaagg ccagttaata gaaaaggggg tgaagtcaaa ccctccaaca       420
     taatcatcat aagaagatta taattacccg atcaacgctg gacctgccac cgacgcctag       480
     ctcatcgctg gaccagcaac ttattgatta agactataaa tacccgatca acgctggacc       540
     tgccaccgac gcctagttca tcgctggacc agcaacatat taatt                       585
//
ID   Gypsy-1_DKi-I repbase;    DNA;    INV; 5175 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.07, Created)
DT   23-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DKi_;
KW   Gypsy-1_DKi-LTR; Gypsy-1_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5175
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1305-1305 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2722-3264] - Reverse transcriptase
CC   Positions [4289-4774] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2644..4329
FT                 /product="Gypsy-1_DKi-I_1p"
FT                 /translation="MFQFINARDALHTRTRCFIEKQVQEWLSEGIILPSCS
FT                 EYASPVVLVSKKDGSKRFCCDYRKLNQKIKKDNFPMSLIDDVLDRLQGSKI
FT                 FTTLDMMNGFFHVPIDKDSRKYTAFVTHNGQYEFTHVPFGISNSPAVFCRY
FT                 VSAVLRELIQNQTIVVYMDDIIVPSKDETDGIKALEIVLNAASKAGLRIKW
FT                 EKAQILKGRINFLGYTIENGTISPTDEKIEAVVNFPVPQSRQALQRYLGLT
FT                 SYMRRFIKDYALVAKPLSDMLRKESNQKNDRTIVMTEQGVVSFNHLKRLLV
FT                 SAPVLKLFDPLAVTEVHTDASKYGFGGVLMQKDPDDQQFHPIEFMSRKTNA
FT                 CEEKYSSYELEVLAIVNAMKKWRVYLLGKPFTVVTDCDAFAMTIKKDDLPP
FT                 RVARWAMSLQEFEFKVEHRAGTKMRHVDALSRLSCFLITDSTKSRLIEAQN
FT                 RDDWIKAVKVILVSDKEHEDFYLQNNILYKDPVNELLVVPESMEDEIISMA
FT                 HKEGHFGVKKTRDVLEKSYYIPGIQSKVERVVRGCVECLIADSKRGKKEGL
FT                 LSPIDKAQEPLGTTT"
XX
SQ   Sequence 5175 BP; 1795 A; 895 C; 1259 G; 1222 T; 4 other;
     aattattggg ggctcgtccg ggataagtcc aagaataatt aaagaaaagt gcgttaacac        60
     aaacagcaaa taaaaactag ctaaaacgac ggaaaattga tcaagacgga gtcaccaaaa       120
     tttcgaagca ttgaagaaac gttgaagaag caaaaccact aaaaagtgta ctcgaagaag       180
     cattttttaa ctgaaaaggt gtattcctgc atgtattggt agacagcgaa gtcacgtacg       240
     cacaaacgct cacaacacag acgaaaacct cattgtagtg tgcgtgtgaa ttctcgagag       300
     cgacgaaama gaagaactgg agtacagcag aaaccgaatt cgacgaaaca aaactggacg       360
     aaatgctgca cctcattgta gtgtgtgtgt gaattctcga gagcgacgaa acagaagaac       420
     tggggaactg ctgcaaatat ttttggacga agtgatggca gatgacaaat agaccctgtg       480
     aatagaaacc tattgcaacg acggcgtact tgtgaaaatt tttggacact ttgaagacgt       540
     gtctgaacag gaattttccg tgttggaaaa cgaatggatg agcagatgaa gagctggtga       600
     aatagacgac gaatttcaca gcaacaacaa atcgaggaga gcaacgacga ataaagaaga       660
     gcagcgacga gtacgagcta gagagcagcg acgagtacga gctagagaga agcagcgacg       720
     aggtgcagaa aagtatacta tataaaagca gaaaagtata ctatataaaa gcagaagaga       780
     caacggctac gtgagcagca gatcgacgac gttagacaag cagtagcgac aactacagga       840
     agcagacgac gtaaagcagt agcgacaact acagaaagca gacaacgtaa aggcgagaga       900
     ggagcaattg acgacgtgat ccataacgta aagctaattg aggttgcgga aaagacgaat       960
     ttcgcaacga aagagagctt tactacgaca acattgaaga gacgagaaga gcggcggaag      1020
     agagtcgtaa gcactggctc tgggtgagct ggaaacggag tgttcaacaa atttgttttc      1080
     ttgaaattgt ttaacgtaat tgcattgctt gtttacaatt attgaattct ataatttaac      1140
     atttaaaagt atttgtaatc ggcttacgta ctaacatgga tgctagaaca atcctcgatt      1200
     tgacagtgcc tctattaaga gcaaaattat cggaattggg tttggataca agtggaagaa      1260
     agagtgcttt gcaggataga ttgtttgatc actttggctt agatgtaggc ggagaggcgg      1320
     atgaagatgc agtgagtgtt tcaggttcat caaattatca agaggctagt ttgaacgtaa      1380
     gctcgagatt tactctacgc gatgtccaag acagtatttc atctttctct ggctccgagc      1440
     aggaagacgt caatcattgg ttgtccgagt tcgaggatgt tgcagtaact gtagggtggg      1500
     accatttgca aagatttatt tacgccaaac aacttttgat tggagccgcc aagctttata      1560
     tcaaaagtac gaacggaatt aggggttggg aagagttgaa gaaagctttg aaggaagagt      1620
     tcggtaaaaa actatgctca gctgagattc ataagattct tcggcagaag caaaaacaac      1680
     caaaagagac atgtattgaa tatttgtaca gcatgatgga gatcggcaaa tcgattaatc      1740
     ttgatgagga aagtttggtt tcgtatgttg ttgagggcgt accagacggc aagataaata      1800
     aagctggatt gtatcgcgct aaaactgtcg gagagctgaa ggacgaaatt tctatttacg      1860
     aaaagattaa aggaaaggga aatagtaagg aaatttttaa gaaagaggta acagttaamc      1920
     aagcacacgg taacactcag agaaaatgtt ttaagtgcga caatgaaggt cacattgcca      1980
     gagagtgtaa aggagagata gtttgttatc attgcaacca gaaagggcac atctcaaaga      2040
     actgcacgca gaagaaaaac gatattgtcg taaagagmga acaggcgaat gttgttggag      2100
     ttaataccga aaaagggtca atttacaaaa caatagtagc ggaaggcttg acatttgtag      2160
     ctatgataga ttcggggtgc gacttatgct tgatgaggga ggatattttc agaagttttg      2220
     aagattttaa actcgagcct gtagttaaac atcttagagg tatcggaaaa ggcgagctta      2280
     aaacaattgg acgcttcgac cttagccttc aggcggatgg cgtatgcttc accgcaactt      2340
     ttcatgtagt caaacagaat gagttggagt acgcagccat cgtaggaaat gacgtgctac      2400
     aatctattga tgtaatgttc agctcgaagg gagtcgtatt taaggcaaaa gaaaaagagt      2460
     tcgcttcggc attcgaagga atgcgtgtca cggagataat cgatgaaacc tcagtcctcg      2520
     acgaaattga tttatctcac ctgggaaata gtcagaagct aaaagtagaa agtctcgtta      2580
     aaaattacaa gccagcaaag tctttagtgt ctccggttaa tatgaagatc gtattggaag      2640
     acgatgttcc agtttatcaa cgcccgcgac gcacttcata cgagaacaag atgtttcata      2700
     gaaaagcagg tgcaggaatg gctttcggag ggaataattt taccaagttg ctcagagtac      2760
     gcatcacctg tagtactggt ctcaaaaaag gatggatcga agagattttg ttgcgactat      2820
     cgaaaactca accaaaaaat caagaaagac aactttccaa tgagcctgat tgacgatgtc      2880
     ctggatagac tgcaagggtc gaaaatcttt accaccctcg acatgatgaa cggttttttc      2940
     catgtcccaa ttgacaaaga ttcgagaaaa tatacagctt tcgtgactca taacggacag      3000
     tatgaattta cgcatgttcc atttggtatc tcaaactctc cggctgtgtt ttgtcgttat      3060
     gtttcagcag tcttgcgaga acttattcaa aatcagacga tcgtagtata catggacgat      3120
     ataatcgtgc ccagcaagga cgaaacagat ggaataaagg ctttggagat cgtattaaac      3180
     gcagcatcga aggcaggttt acgaattaag tgggaaaaag cacagatttt gaaaggcagg      3240
     atcaactttt tgggttatac gattgaaaat ggaaccatat ccccaactga cgagaaaatc      3300
     gaagcggtcg ttaactttcc agttcctcaa agtaggcaag ctttgcagag atacttgggt      3360
     ttaacgtcat atatgcggcg ctttatcaaa gactatgcct tggtagcaaa gcctttgagc      3420
     gacatgcttc ggaaggaatc aaatcagaaa aacgatagga ccatcgtgat gactgagcag      3480
     ggtgtcgttt ccttcaacca cttaaaacga ctattggtat cagcaccagt actcaaactg      3540
     ttcgatcctt tggctgtaac ggaagtacat acagatgcga gtaaatacgg ctttggcggc      3600
     gttttgatgc aaaaggaccc agatgatcag caatttcacc cgatcgaatt tatgagccgc      3660
     aaaacaaatg cttgtgagga gaagtacagt tcgtatgagc ttgaggtttt agccattgtg      3720
     aacgcaatga aaaagtggag agtgtacttg ttagggaaac cctttacagt agtaacagat      3780
     tgcgacgctt ttgcaatgac catcaaaaaa gacgatctgc cccctagagt tgcaaggtgg      3840
     gccatgtctt tgcaggaatt cgagttcaaa gtagaacacc gagccggaac gaagatgagg      3900
     catgttgatg cgctcagccg tttgtcttgc tttcttatta cggattccac aaaatcacgt      3960
     ttaattgaag cacagaacag agacgattgg ataaaagccg ttaaagtcat attggtcagc      4020
     gacaaggagc acgaagattt ttatttacaa aataatatcc tttacaagga cccagtaaat      4080
     gaactgcttg tcgttcccga atcgatggaa gatgaaatta tttccatggc acacaaggag      4140
     ggtcacttcg gagttaaaaa aaccagagac gtactagaga agtcctacta cattccagga      4200
     attcagagta aagtagagag agttgttaga ggatgtgtag agtgcttgat tgcagactct      4260
     aagcgcggaa aaaaagaggg attactatcg ccgatcgata aagctcagga accactcgga      4320
     actaccacat gaccacgtcg gtccacttac cgacacgaag aagaagtata accacatatt      4380
     ggcggttgtg gatggatttt cgaagtttgt ctggctttac ccgacaaaat caacaggaac      4440
     agaagaagtt atagaaaaac ttcagaagca agcagcagtt tttgggaatc ckcgcaggat      4500
     agtcacagac aggggaacag cattcacttc aggatctttt acagagtact gcgatcgcga      4560
     aggcattcag ctacttcaca tcacaacagg tttacccaga ggcaatggac aagtcgaacg      4620
     aattcataag atcgtaattc cgatgttagg gaaaatgtgt caggaaaacc ctgtaaactg      4680
     gtatcgccac gtagaaagag tccaacagat aataaacaat actcctcctc gaacaactaa      4740
     gtatagtccg tttacaattt tgacaggatt gaagatgaga attaaaatag atgatataaa      4800
     ggagctgcta gaagaattag aaatagaaga actaaaagat gagagggaag aaattcgaaa      4860
     gaaagcacag gaaaacatag aaaaagtgca gcaggagaac aggagaaact ttaatgagaa      4920
     aagaaaggtc gaaactgagt atgaagtagg agacttggtt gctataaaga gaactcagta      4980
     tggaacaggt atgaaacttc gaccaaaatt tttcggcccg tataaaataa caaaaaaact      5040
     aaaccacggt cgttatgaag ttgagaaaga agggaaccag gaaggaccta aagttaccac      5100
     aactgcagca gaatatgtta aaaaatggag ttcattcagg ggcgaatgaa tattcaggat      5160
     ggccgattgt gggat                                                       5175
//
ID   Gypsy-1_DKi-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.07, Created)
DT   23-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DKi_;
KW   Gypsy-1_DKi-I; Gypsy-1_DKi-LTR.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-328
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1306-1306 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 328 BP; 110 A; 69 C; 52 G; 97 T; 0 other;
     tggagtaagt aggagtatta gggacagcct taataaacat ggagtgtaca cactaattcc        60
     tatttcacca taaccgccac tatttcatca gcagaggagt acagtattgt tgtcccactc       120
     caaactctga tctgccatca ctctttcttt cataatgtcc ataaccctaa attcgtagag       180
     tcgaaatcag tcgctgtaga aaactgaacg aggcaagtcg agtgcgtcca tagtgcgaaa       240
     gaagaatttt ccctaaataa tttaaacatt tataatcttg tgaactttac cctaaaataa       300
     aataaactta atttgtatta tccctaca                                          328
//
ID   Gypsy-1_DMo-I repbase;    DNA;    INV; 4329 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4329
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           261..1133
FT                 /product="Gypsy-1_DMo-I_1p"
FT                 /translation="MADEENSTDAELPTENTSNMNAILSKLPFPQLNSTTS
FT                 IEMFFTKLEGWFELQGIGTRKEHEKYTAVITYADPKYLEQVHDLVVNEPTS
FT                 NPYTTLKQSILAKFAESEMVRLDKLATGIQLGDGRPSHLLSQLQQTNATND
FT                 ESVVRRYWIKRLPPSARAVIVGILQSAPNTPLSQLATTADAVIDSLNYSGD
FT                 NIQAVTSINSEDTSLATRMSRLEKRIDDQDKCLQEISKKLSQSLNNNNNRR
FT                 SRSRSSSNQRNTSQQSNANQYCWYHNKYGSSAQHCQAPCNFKSNNNGTKN"
FT   CDS           1097..4309
FT                 /product="Gypsy-1_DMo-I_2p"
FT                 /translation="MQLQVKQQRDKKLITPIEVSKGSVDGQPQHAFQNSPK
FT                 LKVEVHSISTSNRLFIPDAKSGRKFLIDTGADISVIPTSTINRRLNICKEN
FT                 PLFAANGSTINTYGTTRLTLDLGLRRPFTWNFIIADTTIPILGSDFLQHFN
FT                 LLVDIKQGKLIDAQTLLARSGICSLQSPSSVKTFDTSCQFAKLLEEFKDIT
FT                 QLNFAAPKPTTSDVTHCIDTRGPPTFAKPRRLTPDKFKAAKAEFEYLLKIG
FT                 VCRPSKSSYASPLHMVRKPSGDWRPCGDYRALNAQTIPDRYPLPHIQDCTH
FT                 IFYGKKIFSKIDLNRAFHQIPIEPGDIPKTAITTPFGLFEFTYMTFGLCNA
FT                 AQTFQRYMDTAFRDMDFVFVYIDDIAVASASKEQHKLHLKQVFERLRRYHL
FT                 TINPGKCSFGQTSIKFLGHNVDSNGIAPLPDKVKTIIDFPLPKVAKELRRF
FT                 LAMINFYRRFLPKAIIHQAPLVQLIPGNKKNDSSPISWTEDTIKHFEECKQ
FT                 SLATATLLVHPSPDASLSLSTDASDTAVGAVLHQIINEERQPLGFFSIKLT
FT                 DAQRKYSTYDRELLAIYLSIKHFRYMLEGRIFDVRTDHKPLVFAFTQKPEK
FT                 ASPRQLRQLDFISQFTTSIQHIAGTENTTADTLSRISTVDSNIIDYNKIAQ
FT                 AQINCSELKTILKDKTTTLQLKSISLPHSSTPIICDFSTDTVRPFIPQPLR
FT                 STIISKMHNIAHGGVKSTLHIIKQRFVWPSMHTDVKNFVKHCIPCQKSKVT
FT                 RHVHSPLQQYALTSQRFEHINLDLIGPLPQSGQYRYCLTIIDRYTKWPEAV
FT                 PIEDIQAETVAAALINTWISRFGVPARITTDQGRQFESKLFNELSQLLGIN
FT                 HLRTTAYHPQANGIIERWHRTLKASIMCQNRSGWPNKLPIILLGLRSAYKP
FT                 DIQTTASQLVYGTTLRLPGEFFHINRQFQPQTEFAQELTRIMSDLRPIPTA
FT                 NHDTTKPFVFKDLAESTHVFLRNDMVRESLQPPYDGPFEVKSKHPKFFNII
FT                 IKGRDTKVSIDRLKPAYIESERQLTPTIAITPSSSPPPQPVPQHMPNQPTG
FT                 RPRRTIRLPVRFTT"
XX
SQ   Sequence 4329 BP; 1405 A; 1185 C; 725 G; 1014 T; 0 other;
     aatggtgacc ccgagttcaa atacgcgccg ttggtttttc actaaatgag cttcttgatc        60
     agcaacacac gctgacgatc acttcggtag caaacatttt agctacttat ttttacatta       120
     ccagtgatct caaaaagttt tatcaacaaa gaagtgcaac aatttcacag ttcgtcgcag       180
     ccgtctcgac atacacacac atagccaaca cgcgctattt cacaacgaag cgacgcgcaa       240
     aaaactaact gcgcaacaag atggccgacg aagaaaattc aaccgatgcg gaattaccta       300
     cagagaatac ttccaacatg aatgccattt taagcaaatt accattccct caactaaatt       360
     caacaacatc tatcgaaatg tttttcacca aactcgaagg ctggtttgag ctgcagggca       420
     tcggtacgcg taaagagcac gagaagtaca ctgccgttat aacctacgca gatccaaaat       480
     atctggagca agtgcatgat ctagtagtga acgagccaac ttcaaatcca tacaccacgc       540
     tgaaacaatc aattctcgcc aaattcgcag agtctgaaat ggttcgtctt gataagctcg       600
     caactggtat tcaactcggc gatggacgcc ctagccacct gttaagtcaa ctacagcaaa       660
     ctaatgccac taatgacgaa tctgttgttc gacgttattg gatcaaacga ttaccacctt       720
     cagctcgagc tgtcatcgtt ggaattcttc aaagtgcacc aaacacccca ctcagccaac       780
     ttgctaccac agctgatgct gtcatagatt cgctcaatta ctcaggtgac aacatccaag       840
     cagtgacgtc tatcaactct gaggacacgt cactggcgac tcgcatgagt cgtttagaga       900
     aacgaatcga cgaccaagat aagtgtctcc aggagataag caaaaagctt tcacaaagcc       960
     ttaacaacaa caacaatcgt cgatctcgca gccgctcatc aagcaatcaa cgcaatactt      1020
     cacaacagag caacgcgaat caatattgct ggtaccacaa caagtacggt agcagcgctc      1080
     aacattgtca agctccatgc aacttcaagt caaacaacaa cgggacaaaa aactaatcac      1140
     tcccatcgag gtttcaaaag gcagcgtcga tgggcaaccc caacacgcct ttcaaaatag      1200
     cccaaaactt aaggttgaag tacatagcat ttccacttct aatcgtttgt ttattccaga      1260
     tgctaagtct ggtcgaaaat tcctcatcga cacaggagca gacatatctg taatacccac      1320
     ctcaacaata aaccgacgat taaatatctg caaggagaat ccactatttg cagccaacgg      1380
     atccacaatc aacacatacg gcacaactcg ccttacactc gaccttggcc tgcgtcgtcc      1440
     gttcacatgg aacttcatca tagcagacac cactatacca atcctaggat cagatttctt      1500
     gcagcacttc aacttactcg tcgacattaa gcaaggaaag ttaatcgacg cgcaaacact      1560
     acttgcacgc agcggcatct gcagtctaca atcgccgtcc tctgtcaaaa cgtttgacac      1620
     atcatgtcaa ttcgccaagc ttttggaaga attcaaggac atcactcaac tcaactttgc      1680
     agcacccaag cccacaacat cggatgtcac acactgcatc gacacccgag ggcctcccac      1740
     ttttgcaaag ccacgtcgac taactccaga caaatttaaa gcagcaaaag ctgaattcga      1800
     atatctgctc aaaatcggcg tttgccgacc atcaaaaagt tcatatgcat ctcccttaca      1860
     tatggtacgc aaaccctcag gcgattggcg accatgtggc gactacagag ctttaaacgc      1920
     acagacaatt cctgatcggt atccgttacc tcatatacaa gactgcaccc atattttcta      1980
     tggcaagaaa atattctcaa aaatagatct caaccgtgcc tttcatcaaa ttccaataga      2040
     acctggcgac atccctaaaa cagctatcac aacacctttc ggtttattcg aatttacata      2100
     tatgacgttt ggattatgca acgctgccca aacattccaa cgttacatgg acaccgcatt      2160
     cagagacatg gattttgttt tcgtctacat tgatgacatt gctgtagcat ccgccagcaa      2220
     agaacaacac aaacttcatc tcaaacaagt tttcgaacga cttcgacgct atcaccttac      2280
     aatcaatcct ggtaaatgta gttttggtca aacctcaatc aaatttctgg gacacaacgt      2340
     tgactccaat ggcatagcac ctctgcctga taaagtcaag accatcatcg atttcccgtt      2400
     gcccaaagta gcaaaggaac ttcgacgctt tctggcaatg atcaactttt acagaagatt      2460
     cttgcccaag gccatcatac atcaagcacc gctggtacag ctcatcccgg gaaataagaa      2520
     gaacgattct tcgcctatat cctggaccga agataccatc aaacattttg aggagtgcaa      2580
     acagtcatta gccactgcaa ctttactggt acatccatca ccagacgcta gtctctcact      2640
     cagcacggac gcaagtgaca cagcagttgg cgctgtcctt catcaaatca tcaacgaaga      2700
     acgccagcca ttgggattct tcagcattaa acttactgat gcacaacgca aatacagcac      2760
     gtacgaccgt gaattgctag ccatctatct cagcattaaa cactttcgct acatgttaga      2820
     aggacgaata ttcgatgtgc gcacagatca caagccacta gttttcgctt ttacgcaaaa      2880
     gcccgaaaaa gcttcacctc gtcaacttcg tcagttggac ttcataagtc aattcacaac      2940
     atcaattcaa cacatagctg gaactgagaa cactacagca gatacattat ctcgcatatc      3000
     aacagtagat tcaaatataa tcgactacaa caaaatcgct caagcgcaaa tcaactgttc      3060
     tgaactgaag acgattctca aagataagac tacaactcta caactcaagt caataagctt      3120
     acctcactct tcaactccaa tcatatgtga tttctccact gacactgtac gcccattcat      3180
     ccctcagcca ttgagaagta caatcatcag caaaatgcac aacattgctc atggaggcgt      3240
     taaatcaaca cttcacatta tcaaacaacg ttttgtttgg ccctccatgc acaccgatgt      3300
     caaaaacttt gttaaacatt gcataccatg tcaaaaatca aaagttacac gtcatgtcca      3360
     ctcaccactt caacaatacg cactcacatc tcaacgattc gaacatatca acttggatct      3420
     gattggacca ctaccccaat caggacaata cagatactgc ctcactatca tcgatcgcta      3480
     caccaagtgg ccagaagccg tacctatcga agatatacaa gcagagacag ttgcagcagc      3540
     attaatcaac acttggatct ctcgttttgg agttccagcc cgtataacta cagatcaagg      3600
     tagacagttc gaatctaaac ttttcaacga actatcgcaa ctccttggca ttaaccacct      3660
     acgcacaaca gcctaccatc cacaagcaaa cggaatcatc gaacgttggc atcgtactct      3720
     caaagcttca attatgtgcc aaaataggag cgggtggccc aacaagttgc caatcatatt      3780
     gctcggacta cgatcagcat acaagcctga tattcaaacc acagcctcac aacttgtcta      3840
     tggcacaacg ctacgcctgc caggagaatt tttccacata aatagacagt ttcaaccaca      3900
     aacagagttc gcacaagagc taacaaggat catgagtgat ctacgaccaa ttccaacagc      3960
     caaccatgac actactaagc cattcgtttt caaggattta gcagagtcga cacacgtttt      4020
     tctacgcaat gatatggtac gcgagtcatt gcaaccacca tacgatggtc catttgaagt      4080
     taaaagcaag cacccaaaat tcttcaacat catcatcaag ggacgagaca ctaaagtttc      4140
     tatcgaccgt ctcaagcctg cctacattga atcagaaaga caactcacac ctaccatcgc      4200
     aatcacgcca tcatcatcac ctccaccaca gccagttcct caacatatgc caaatcaacc      4260
     aactggaaga cctcgccgca caattagact tcccgttcgc ttcacaactt gaagtctagg      4320
     agggagtac                                                              4329
//
ID   Gypsy-1_DMo-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-292
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   .
XX
DR   [1] (Consensus)
XX
SQ   Sequence 292 BP; 113 A; 67 C; 29 G; 83 T; 0 other;
     tgtggcgatc tggcatcaca ataattctcg atcgatacta tcgataaaac atgatctctc        60
     aattaccatc attagtaata agaatacata tagacacttc ttaagcttca gcgcgacaca       120
     tcacatgtgc atattacatc aaccttaatc aatacaattt tagcaaatca tagctgtgtt       180
     ctaatttaat acaaataaat agtgacgcat acattctcca caaaaaccaa caaacaatat       240
     tttcataaat gggaatcccc acattcacat acattcatca acaataccca ta               292
//
ID   Gypsy-1_DPer-I repbase;    DNA;    INV; 7519 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DPer_;
KW   Gypsy-1_DPer-LTR; Gypsy-1_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7519
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1494-1494 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5012-5488] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           924..2570
FT                 /product="Gypsy-1_DPer-I_2p"
FT                 /translation="MPLRHSPQQNNPLSSENFCGICCSEMSNTQPCFCTPC
FT                 NHVFHKACLEEWFPHHDECPNCSRVCTLSQAKLVVGNCSPNKPQPEPTELP
FT                 GPSGITTRSLAKALEVAQTPANGHFQPETGKVSEGNGKNTQLSQIPTVGSV
FT                 PVERTTRPTRSKRTRAPAKKQVPKFPPGRSSGPEVVCLSGLDASHSSNQTE
FT                 APSANVATHSSPWEAPNARTAPPSQGLDLDVLQQIIERTVARAISTLQIQP
FT                 PASPQEGYARPNIPTPVSCINSMTSLRTAKTANIMQKWNVPFDGSTEGLGV
FT                 EEFIYRVKTLTDETLDSDFLGLCKHLHILLVGKARDWYWRYHKQVDRIVWT
FT                 EFCAALRQQYKDYRSEFMSKELIRARKQHVGEPFVAFHDAVAGLIDKFGIK
FT                 MAEEELIEILKANLLPETRHKILYQSISSVGQLRRLVQMHENLVQELQKSD
FT                 KSRPPVGRRSIHSLEESRPESDQEEYEDISVEAIQSSTAKRSCWNCEELGH
FT                 VWENCMADRRIFCYGCGAPNVYKPQCQTCIRRASENRQKGASNNSRMPPKN
FT                 HH"
FT   CDS           2840..5857
FT                 /product="Gypsy-1_DPer-I_1p"
FT                 /translation="MRSYAEVSFLGRTEQGLLDTGASISCIGAEVAQTDFS
FT                 SFSEYKLIKATAKTADGQSQQILGVLNVIMRYRTIEKPMKLYIIPSLTQNL
FT                 ILGHDFWRSFSLAPDIIAAVEISSKDDEAAEPDPLRYPLTRQQNQQLEVVK
FT                 QLFPNATEGLGRTALLKHHIDVGQAAPVKQRFYPVSPAVEKLLYAEVDRML
FT                 QLGVIEPSSSAWSSPMRLVLKPNKVRLCLDARRLNEVTRKDAYPLPSIDGI
FT                 FARLPKANIITKLDLKDAYWQIELSEDSKSLTAFTVPGRPLYQFKVMPFGL
FT                 CNAPSTMCRLMDEIIPPDLRYCVFGYLDDLCIVSADFSSHLAVLVRLAEQF
FT                 RKANLTLNIKKSQFCVTSVNYLGYVISNGGICTDPSKVACIVNWPPPRNLK
FT                 QVRGFLGVCGWYRRFIQNFSELSCPITELLSNKKKFIWTPEAQVAMDSLKT
FT                 VLTSAPVLENPDFEQKFFLHCDASDFGIGAVLVQLVDLQEKPIAFMSKKLS
FT                 RAQRNYSVTERECLAVILAIEKFRCYLELQEFEVVTDHSSLLWLMRQQNVS
FT                 GRLARWIFRLQQFKFSISHRKGKDHIVPDALSRLHEPEVSAVVMSPVIDLE
FT                 SDAFQDESYQQLKEQYQKNSSQLPDLKINDQFLYIRTEHADGKAGQDSRTW
FT                 KLWVPERLKTDVLKQAHDNPTSAHAGMQKTIEKVRRSLFWPGLAKDVREYI
FT                 RSCEVCKACKAPNYTLRPPMGNHIPTCRPFQRLYIDLLGPYPRSKNGHVGL
FT                 LIVLDHFSKYHWLHPLKKFTSVVIQEFLLKHIFHAYGVPETIVSDNGKQFK
FT                 ATEFNAFLTQLGIKHMYTALYSPQSNAAERVNRSLLAAVRAYLQQDQTYWD
FT                 QHLSSISCSLRSSLHQSLGCSPYRALFGLDMLTHGTDYKLLKDLDLLEEPV
FT                 VPVARSDNLALIRKDIQGNIKKAYERNVAQYNLRAKPVSFREGQEVFHRNF
FT                 SLSKFTQNFNAKLAPKFLKCRVRKKLGNCFYLLENLQGREIGTFHAKDIRS
FT                 "
XX
SQ   Sequence 7519 BP; 2130 A; 1747 C; 1692 G; 1948 T; 2 other;
     taaatttttg gcgcccaacg tggggcacta gcaaaagtta tagtgacagt agaaagtatt        60
     ggtcacttta gcaacaaaat cagctattgg ctcgtcccac ctattgctcg tttgtattca       120
     tatgcttaat gctgacttta gttttctcta aacgatctgg tcattgctcc gatacaattt       180
     cagaatattg cggattctgc ttggatccta atactggttg ttcctctgag ttttattggg       240
     aagtcgtcga gtctacgacg aagggaagct taagtgataa tccggaattg agaaagtagt       300
     tcccatgctg acgcatcctg tcgggctagt caaacttgtt gtctggaatg tgtatatatg       360
     ctgcttgcgt attcataccg aacaagcgag attggtttag gtcgcgtcct ccaagctaca       420
     gttaattcag cggatattag tttcaataga ttgaattgtg aggttgattc ggatttggta       480
     ttgttactct ttgcgcatag catacggttg catacaattg cagaatattg catatttggt       540
     ttaggccgga tatcagtact gattgtccct gtacgggtga tggaagcaca gagattgcgg       600
     tcccagattt ggtcttcact cataccctta ccattggcgg gtattattcc agcggcagcg       660
     gtggctgcat atggttgtct ggaactagcg cgtatgctgc ttgcgtatcc ttgccgaatc       720
     atatgtggac acttaaacca gtgcactgat actaagacaa tgcaaattag aaaccatagc       780
     ccaaacaaaa tcmattcttt tgtcgctgtt ccaaagattc gcaactccta tccctatctt       840
     attatgtcac cmattaaatg tcaccctagg aaaaatttgg tagaatatag aaaacaaata       900
     ataataaaaa aatcttataa aaaatgccgc tgcgacatag tcctcagcaa aacaatccgc       960
     tgagttcgga aaacttttgc ggcatttgtt gctccgaaat gtccaatact cagccgtgtt      1020
     tttgtactcc gtgcaatcac gttttccata aagcatgtct ggaagaatgg ttccctcatc      1080
     acgatgagtg tccgaactgt agccgagtat gtacgttatc tcaagcaaaa ctagttgttg      1140
     gcaattgttc tccaaacaag ccgcagccgg aaccaacaga attacccggt ccctcgggaa      1200
     ttactactcg aagtcttgcc aaagctttgg aggtcgcaca gaccccggca aatggacatt      1260
     ttcagccaga gacgggaaag gtatccgagg gaaatggcaa gaatacccaa ttgagccaaa      1320
     ttccaactgt aggttcagtc ccggtagaac gaaccactag gccaactcgt tccaaaagaa      1380
     ctcgagcacc agccaaaaag caggtcccga agttcccgcc aggtcgatct tccggtccgg      1440
     aagtagtgtg tttgtcggga ttggatgcta gccatagctc caaccagact gaagctccgt      1500
     cagctaatgt cgccactcac tctagccctt gggaagcacc caatgcacgg acagcccctc      1560
     caagccaggg gttggacttg gatgtcctcc aacagataat tgagcgcact gtggccagag      1620
     ccatatccac tttgcagatt cagccgccag cgagtccgca ggaagggtat gcgaggccaa      1680
     atatcccaac accagtttca tgtataaaca gcatgactag cctgcgaacg gccaagacgg      1740
     ccaacattat gcaaaagtgg aatgttcctt ttgatggttc taccgaaggt ttaggggtag      1800
     aagaattcat ttaccgagtc aaaacattaa ccgatgaaac cttggatagc gattttctcg      1860
     gcctttgcaa acatttgcac atcttgctgg ttggcaaagc gcgcgattgg tattggagat      1920
     accacaagca ggtagatcgc atcgtttgga cagaattttg tgcagctctt agacaacaat      1980
     ataaagacta tcgttctgag tttatgagca aggaattgat tcgagctcga aagcaacacg      2040
     tcggagaacc cttcgtcgct tttcacgacg ccgtggctgg tcttatagat aaatttggca      2100
     ttaaaatggc ggaagaggaa ttaatagaaa tattaaaagc aaatttgctt cccgaaaccc      2160
     gtcacaaaat cttatatcag tccattagct cagttggtca attgagaaga ttagtacaga      2220
     tgcatgaaaa tctagtgcag gagttacaga aatctgacaa gtctcggcca ccggtcggcc      2280
     gccgttcgat acatagtctg gaggaatcgc gccctgaaag cgatcaagaa gagtatgagg      2340
     atatcagcgt agaggccatt caaagttcga cggctaagcg ttcttgttgg aattgtgagg      2400
     agcttggaca tgtgtgggaa aattgtatgg cagataggcg gatattttgt tacggctgtg      2460
     gagctccgaa tgtctataag ccgcagtgcc aaacatgcat tcgtagagct tcggaaaacc      2520
     gtcagaaggg tgcatccaac aacagccgga tgcccccaaa aaaccaccat taatcttgcc      2580
     cgttgactta gagcgagaca agaagagttt ggcttcttgt tgtgagaaaa gaaaggaaac      2640
     gaatacgatc gtaaagagaa gttgtcggtt tttaccctat cccgaacgga ttcataaata      2700
     tttagaggtt cgaaacagaa tttttaatga aaaaccacat gaagccccaa aacgaatcca      2760
     gcgtttaaga aaatattatg ataatgtcaa aaataaccgt agactgttag tttccgctat      2820
     tattaatagt cccaaggata tgcgcagtta tgccgaagta tcctttctgg gtcgaacaga      2880
     acaggggctg ttagacaccg gcgcaagtat cagctgtata ggtgctgaag tagctcagac      2940
     tgatttttca tccttttctg aatataaact aataaaagcc actgcaaaaa ctgcagatgg      3000
     ccaaagtcaa cagatactgg gggtattaaa tgtcatcatg cgttatcgaa ctatcgagaa      3060
     acccatgaag ttatatataa ttccatccct gacacaaaat ctaatcctag gtcacgattt      3120
     ttggagatcc ttttcgctgg ccccagacat cattgcagct gtcgagataa gctcgaaaga      3180
     cgatgaggca gccgaaccag atcccttacg gtatccttta actaggcagc aaaaccaaca      3240
     actcgaggta gttaaacagt tatttcccaa cgcgacggag ggactagggc gtacggcctt      3300
     gcttaagcat catatcgatg taggtcaggc cgcccccgta aaacaacgct tttacccggt      3360
     tagcccagcg gtggaaaagt tgctttatgc tgaggtagat cgcatgctcc aactaggcgt      3420
     tatcgaaccg tcatccagtg cttggagttc gccaatgcga ctggttctca agcccaacaa      3480
     agtccgtctg tgtctcgatg ctcgaagact gaatgaagtc acccgtaagg atgcctaccc      3540
     attaccaagt atcgatggta tttttgcccg gttgcccaag gcaaatatca taaccaagct      3600
     ggacctaaaa gatgcatatt ggcagatcga actctctgag gattccaagt cactaactgc      3660
     ttttacggtc ccgggaaggc ctttatatca gtttaaggtt atgccttttg gcctgtgtaa      3720
     cgctccatcc actatgtgtc gtttgatgga tgagatcatt cccccggatt tgcgttactg      3780
     cgtctttgga tacttggacg atctctgcat cgtatcagca gatttctctt cccatctagc      3840
     cgtgctggta cgactcgctg aacagttcag aaaagccaac ctgactctga atattaagaa      3900
     gagtcagttc tgtgtcacca gcgtaaatta tcttggatac gtcatcagca atggaggtat      3960
     ttgcactgat ccctccaaag tagcttgtat agtgaactgg ccaccgccaa ggaatctaaa      4020
     acaggttcgc ggctttcttg gggtctgtgg ctggtaccgt agattcatcc agaatttctc      4080
     tgagctatcc tgtcctatca ccgagcttct ttccaacaaa aagaaattta tttggacccc      4140
     ggaagcacaa gtcgcaatgg actctttaaa aaccgtgttg acttctgctc cagtgctcga      4200
     aaacccagac ttcgaacaga aatttttcct ccactgtgat gctagtgatt ttggtatagg      4260
     agccgtgctc gtgcaattgg tggatctgca ggaaaagcca atagcgttta tgtcgaaaaa      4320
     actaagtcgt gcgcaacgta actatagcgt tacggagcgc gagtgcttgg ccgtaattct      4380
     ggccatcgaa aagttccgtt gctatctgga actgcaggaa ttcgaagtgg ttactgatca      4440
     ttccagtttg ttgtggctaa tgcgccagca aaacgtgtcg gggaggttag ctcgatggat      4500
     ttttagattg cagcaattta aattctcgat atcgcaccga aaaggaaaag atcacattgt      4560
     ccccgatgct ctttcccgat tacatgaacc tgaagtatcc gcagtagtga tgagtcctgt      4620
     gatagatctc gaatccgatg cctttcagga tgagagctac caacagttaa aagaacagta      4680
     tcagaaaaat tcctctcaac tgcccgatct gaagattaac gaccaatttc tgtacattcg      4740
     aaccgaacac gcagatggaa aggcagggca agacagtcga acttggaagt tatgggttcc      4800
     cgagcgattg aagaccgacg ttcttaaaca agctcatgac aatcctactt ccgcgcacgc      4860
     cggcatgcaa aagaccatag aaaaagttcg aagaagtctg ttttggcccg gcttagctaa      4920
     agatgttcga gagtatattc gtagttgtga ggtgtgcaaa gcatgcaaag ctcctaatta      4980
     tactctgcgg ccacccatgg gaaaccacat accaacttgt cgaccctttc aacgattata      5040
     catagatctg cttggacctt atccacgcag caaaaatgga catgttggtt tgctaattgt      5100
     tttagatcac ttcagtaaat accattggct acaccccctg aagaaattta cttccgtagt      5160
     aatccaagaa tttctgctaa agcatatctt tcatgcatat ggggtgcctg aaactattgt      5220
     tagcgacaat ggaaaacaat tcaaagctac agaattcaac gcattcttga cacagctggg      5280
     aattaaacat atgtacacgg cactatactc tccccaaagt aatgcggcgg aacgagtaaa      5340
     tcgttcattg ttagctgccg tgcgagcata tcttcagcag gatcagacat actgggatca      5400
     gcatctctca agtatatctt gttcgctgcg atcgtcacta catcagtcct taggttgttc      5460
     accatatcga gccctgtttg gcttagatat gctcactcat gggacggatt ataagcttct      5520
     gaaggattta gacttgctgg aagaacccgt tgtcccggta gctaggtcag acaatttagc      5580
     tctaattcga aaagatatac agggcaatat taagaaagcg tatgagcgca acgttgctca      5640
     atacaattta cgagccaagc ctgtgtcgtt ccgagaaggt caggaagtat ttcaccgaaa      5700
     tttttccttg agcaaattca cgcaaaattt taatgccaaa ttggctccta aatttctgaa      5760
     atgtcgcgtg cggaaaaaac tgggtaattg tttctacctc ctggaaaatc tgcagggccg      5820
     agaaatagga acctttcatg cgaaagacat tcgatcctga ttcccgctaa tattccgtct      5880
     aacggtggca tattatcggg tggtgtaacg gttgcggttg gacaataccg attcaaaata      5940
     ggttatcgct atggtgctcg gatatcgcat gcaataacct tgggccaatt atcgctgcag      6000
     ggcatagtat agttggggtg ggtgcaagca agctcgaggt agggaacagc tgagctgagc      6060
     tgccgtaagt gctgtgcagc gcatcgcaac ggagctttcg aagccgagct ttaagatcgg      6120
     taagctcgta tttaagcagt gcaaaagcac cagaacgttc tctttcgaaa atttgaatct      6180
     gtgcagccgg tggctatctc cgcttcggta aaaaaatata taactaaatc gaccacgtgt      6240
     aatcccaaaa gaaaagaaaa gtaagaaaat aaaacccaaa taagtgccac aaagacaaac      6300
     cgaaaagaaa taaaacggaa cggggaaagt cccacacggt gggcgcgccg caaaaatcgg      6360
     gcgacaatta ataaccgtgc gccgagaaaa ctggcaagaa actaccctgg cgaaaagtgc      6420
     atatttgcct cgcctcgcca gcaagtgttg ttcttggtgc aaacccgtgc gtcccacagc      6480
     tcggccagga gaacccaaca ctcgtgtctc cgtggaaaag cccggaaaaa ccggtatgta      6540
     aaagtgccct gtagggaaaa tttagatttt ttttcttagc cctcgtggtt ttggttctgt      6600
     ttcgcccata gggccctggc cccgagcggt agccacccgg ctctcccaaa gttctgcccc      6660
     cacccacacc aaactcccac ccttgacggg agtactcttc ggagtcgacc ttggtgtggg      6720
     gccgagattt tttttccccc ttttggagtc gttgaagcat ccacctgccc ggcgacataa      6780
     cctccaccgg ccctaaccct tgcgccatat ctaacgtacg cgcatagagg gcatcgaggg      6840
     catagagatt accccccctc cctatgcgcc gctaactcgc tgtctgcgac ggcctagaag      6900
     acgccgccac ggatccggac cgagatttcg tagcatagtg tagttttaat tgtaattttt      6960
     cttgttcttt ctaagcactt atattcttta actctgaggc acagtcctac ctcgctaggc      7020
     gtgaatgtgc cagttcccaa aacggaattt atttttgcgg gttggagacc gaacgattta      7080
     atcataaaat aacagactac aaaaaaaaac ctttttcata ccccccctat ttaccaatcc      7140
     ccctccgatc tgggcacaca ctaacagggt ctccacagct ccacaacgaa aggcgccttt      7200
     cagcgaggga ccactgtatg caagccgtaa gtgacccaat ttccattttc tcctttgcgc      7260
     ctgtcttcgt aaatctaaaa cgcatgcgca gcggccagcc gctgctgata agagagcgca      7320
     acgcttgcgt tccacacgct cgaagctttt cggtctcttc ggtgccaatg ctgctaagct      7380
     tgcattgctc gcattccctg cattctttta atgcatggaa acgtagccaa gcaatgcact      7440
     aaccaacata gaaaaaaaat ctcctcaacc cagaaaaaaa aaattaaata aatttataat      7500
     gttaaattaa atttcgttt                                                   7519
//
ID   Gypsy-1_DPer-LTR repbase;    DNA;    INV; 817 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DPer_;
KW   Gypsy-1_DPer-I; Gypsy-1_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-817
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1495-1495 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 817 BP; 217 A; 165 C; 157 G; 273 T; 5 other;
     tggctcacca ttgctgatcg ctggtatgac ccctgctgct tttgaatatt ttttttattt        60
     ttattttttt cctttataca tacctaattt acttatttct aatatcttat attatattcc       120
     tatcttatct aattatactc caccatttat atatacctat akctataaaa attttttttt       180
     ctttagkgat taagcctcct attttttttt cattccatta atttttttct tgagttgcct       240
     gctgattgta gtgcaagact agtgttatgt taagaagtga aacttggttt gttagttttg       300
     attgaagcaa matgtctatg atgaagtaca acgaaatata ttgaatttta ttagcaatga       360
     acatggagta gacttataat ttcctaggga cagggtgacc taatggggta gggtaagaat       420
     attagggatt tccagaacct tcgcacccct ggaaatcatg gaagggtggg tatagaatcg       480
     tgtgggtcga cttccatcgc aagacctcac gcccgcgaga gtttggaaca cgccgacgaa       540
     agcccctggt actttcgggt acgccctatg attgtgccat ktaatgtccg ttatgctcgg       600
     aakaggcata gtgttgtttt cggagttcgc tccctgtaga gtcacgggat tctaaaattt       660
     taaagtttat gtagtaggag tcgagacgcg gtcaaacgaa ccccccccaa gttaccgaat       720
     gagcacggaa ccaaagaatc cccaccggcc gtgacctcga catcccctcc aatccatccc       780
     ctactcacgt atagaaatat atcgtggaaa tgttaca                                817
//
ID   Gypsy-1_DRh-I repbase;    DNA;    INV; 2617 BP.
XX
AC   AFPP01024841;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DRh_;
KW   Gypsy-1_DRh-LTR; Gypsy-1_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2617
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01024841; Positions   13871   16487.
XX
CC   'CAAA' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1041..2615
FT                 /product="Gypsy-1_DRh-I_1p"
FT                 /translation="MCFDCAVEPASTFLFISKQLLSGAAKSFIRSQVNIRN
FT                 WDSLKAALRGEFAVKISSAEVHRKLGQRAQRKGETLQEYLYALMEIAKPAK
FT                 LDEESLIEYFVKGVPDAKANKIMLYQAKTIRDLKEQIEVYKKVRGSYKMPY
FT                 RNEARVVEADGFKSFDSKPEFVRKCFKCRDPSHLKKDCKKKDNTNCYRCGQ
FT                 PGHRAAQCKIEVEVKQERNANAVHVENAATKPKSEFTASGLELKIIKSSNA
FT                 QFKGLVDTGADLCLMRRNIFLKLGNEPLTGKEKCLTGIGESQVLTFGSIVI
FT                 PVEVDNMHMKVEFHVVPDEDMGFDAILGRTILDIVDMKVAKEGTDFIRRKN
FT                 HKIVVPMLAKLSYEKPLAWYKYVGRVQQIINSTEPRTTKITPFKLLTGVDM
FT                 RLSGCNELKDLMQEFAIKSLNEEREKFRQTARENIKKVQEENKKAFDLKRK
FT                 QERVYHLNDLVAIKRTQYGVGLKLKGKFLGPYKIVAVKDHGRYEVERVGDT
FT                 EGPFKTSTVSEYMKPWSGPFEANEQSGGP"
XX
SQ   Sequence 2617 BP; 840 A; 473 C; 677 G; 627 T; 0 other;
     atttggggct cgtccgggat ttgacccaaa cattagagtg cagaagtgcg ttttacaaac        60
     aatgattgtc taatttcaag tctggtgaaa ttgcaatttg agacaactgc gcagttaatt       120
     tggcagtgtg tagaacaaaa aaaaaaaaaa aagcgaacta acgaaaacca gcttttaggc       180
     agatgtgtgt gtagaaaagg cgcacgaaaa acgcttggag caaatagcga atgcagtcca       240
     ggaggtagtg catcatagtt ccccagagcg tcggtctgag atccggccag tcacggtgaa       300
     ctggtaactt gcagaggctg atctgtggaa ggcgttggga gcagcgatag acagaggcga       360
     gcggagcaag tcaggagcgt gaagcgggct ttggagcaaa gacgggttga cggaatctgg       420
     agggcaggat tttcaggcag agcagcagag tctggagtag cagatcttgg aggaaggcaa       480
     cgacgtcagc ggacaagcaa gggctaggat tttttcaagt tgaatagtcc agaagaaaat       540
     ccaattggca ggcaagcagt ttcgagaagc agtgcatcaa aaggggtgct aatcagaaaa       600
     ctgacccaat gaaattgaaa gtcgctcaca agtagactgt atgtataaaa ccaaaatttg       660
     tcatttctga agctattcat tattcattgt tattgttaac taatatcttt gtaagcaaat       720
     ttcatctcaa aatgcaactc gaggagataa tgttaatgcg atgcgaggat ttgcgcgcaa       780
     agctactaca ctaaatttac ccacagccgg tagaaagcgc gatttacagg acagactcct       840
     ggctcacttc ggtattcagg acgacgatga taacaacgac tcggatgaag ttgaatctgt       900
     agctaccgct ctcgattgtc cagtgcaggc agtgcctata agccgttctt tgtttacact       960
     taagatgtag aaggcagtgt ttctaatttt gcaggtacag gtagtccaga tatagatcag      1020
     tggattcagg agttggagga atgtgctttg actgtgcagt ggagccagct tcaacttttc      1080
     tttttatttc taagcagttg ctcagtgggg ctgcaaaatc gttcattcgc agccaggtta      1140
     acattcgcaa ctgggattct ctaaaggcag cattgcgtgg cgaatttgct gttaaaattt      1200
     catctgctga ggtccatcgc aagctaggtc aacgtgcgca gagaaaagga gagacgcttc      1260
     aggaatattt gtatgctttg atggaaatag ccaagccagc taaactagac gaagaaagtt      1320
     tgattgagta ttttgtaaag ggagttccag atgccaaggc taacaaaata atgttgtatc      1380
     aggcgaaaac cataagggat ttgaaggagc agatcgaagt gtacaagaaa gtccgaggtt      1440
     catacaagat gccttacagg aatgaagcgc gtgtagttga ggcagatgga ttcaaaagct      1500
     tcgattcgaa accagagttt gtacgtaaat gctttaagtg cagggatccg tcccatttaa      1560
     agaaagattg caagaagaag gataacacta attgttatcg gtgcggacag ccaggtcatc      1620
     gtgctgcgca gtgcaaaatc gaggttgagg tgaaacagga gagaaatgct aacgccgttc      1680
     acgtggagaa cgcagctact aagccaaaaa gcgagtttac ggcctctggc ctcgaactaa      1740
     aaattatcaa gtcttccaac gctcaattca aaggactcgt agacacaggc gctgatctat      1800
     gccttatgcg caggaacatt ttcctcaaac taggcaacga acctctcacc ggaaaagaaa      1860
     agtgtttgac gggaataggc gagagtcaag ttctaacttt tggaagcatt gtcatacctg      1920
     ttgaagtgga caacatgcac atgaaggtgg aatttcacgt agttccagat gaagacatgg      1980
     gctttgacgc aattttgggc agaactatcc tggatattgt ggacatgaaa gttgcaaaag      2040
     aaggcactga ttttattcgt cgaaagaatc acaagatcgt cgtaccaatg ctagcaaagt      2100
     tgagctatga aaaaccatta gcttggtata aatacgtggg acgagttcag caaattatta      2160
     atagcaccga gccaagaacc accaagatta cgccattcaa gcttttaact ggagttgata      2220
     tgcggttatc cggctgcaat gaactaaagg acttgatgca ggagttcgcg ataaaatctc      2280
     taaatgaaga aagagagaag tttcgccaaa cagccagaga gaacatcaaa aaggtacaag      2340
     aagaaaataa gaaagcattt gatttgaagc ggaaacaaga aagagtctat catcttaatg      2400
     atttggtagc aattaagaga actcagtatg gtgtcggatt aaagcttaag gggaagtttt      2460
     tagggccgta caagattgta gcagtcaaag atcatgggcg gtacgaagta gaacgtgtag      2520
     gcgatacaga gggtccattt aaaacatcta cggtttccga gtacatgaaa ccttggtcag      2580
     gtccattcga ggcgaatgaa cagtcaggag ggccgaa                               2617
//
ID   Gypsy-1_DRh-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   AFPP01024841;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DRh_;
KW   Gypsy-1_DRh-I; Gypsy-1_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-284
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01024841; Positions   13587   13870.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 284 BP; 98 A; 55 C; 54 G; 77 T; 0 other;
     tgtgggattt gaatcaggcg ggcttaatgc acggcacact cgaagcgggt taagttatat        60
     ggcaactctt aatcagttca ccatctgaac ttctcgataa aagtactcga ttcttctaag       120
     gctgtcgata cctgaacgaa tgagcgaaga gtcgtcgaat agcgttcgtg aagagaacag       180
     acaatttaag taaaaaccca gaaagaactt tgtaaactaa tctaagcacc tctaatgttt       240
     aaatttaatc ccaataaaac actgtgaata ttataattcc taca                        284
//
ID   Gypsy-1_DSe-I repbase;    DNA;    INV; 6433 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   21-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DSe_;
KW   Gypsy-1_DSe-LTR; Gypsy-1_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6433
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
RN   [3]
RP   1-6433
RA   Bao W.;
RT   "Sequence corrected.";
RL   Direct Submission to Repbase Update (21-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: elements are 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           572..1849
FT                 /product="Gypsy-1_DSe-I_1p"
FT                 /translation="MYRDTGNISSDEEVLELLHRKVPEINRIEISSNSRAT
FT                 EMQAEQIANMEAAIACALQRQEELFEAKLTAIMGELSLLKNKKPKIQTFQE
FT                 IELNPNIECSEPLDMVKSVPEFDGKQENYVSWRQAATAAYKIFAPYEGSSR
FT                 HYQAVGILKNKVRGPASAVLASFNTVFNFHAIIARLDFTYADKTPAHVIKQ
FT                 ELSLSRQGELPLLKYYDEIERKLTLLTNKTIMTHDAAAAAVLNEQHRDDAL
FT                 HAFISGLKKSLKIAVFPAQPRDLPSALALAQEAESSNDRSIFAATFARHNE
FT                 ERAYRPNNQKQTGWKSSQSYGEPNKNSGAIKKNPHFVRTLKGTNHQSGSFK
FT                 QGPHNSAGNGQSQPAPEPMEVDPSFRSKQTTTWQRGRSARSQQKINFMPEE
FT                 NTDEEDYDSVAQASAIEIQDELDAEDSCNFLG"
FT   CDS           1777..4926
FT                 /product="Gypsy-1_DSe-I_2p"
FT                 /translation="LRCSGKRHRNTGRAGCRGLLQFFRVKSLLPYITRTVA
FT                 GGEIKLLLDTGTSKNYITPLPGLKGVVAAEKPFTVKSIHGFTKIDKKCMVS
FT                 VFNVKTPFFILNNLKDFDGIIGLDLLKQVNAKLDFTGNVLNTSNGTEKIQF
FT                 ARAENVNFIKIDDGDVPLAIKNSFDKMIVKNHKAFADPDEALPFNINTIAT
FT                 IKTDGEPVYSKSYPHPMGVTEFVNAEVKQLLADGVIRPSESPYNNPTWVVD
FT                 KKGTDQNGVKKKRLVIDFRKLNQRTVDDKYPIPTISTILSNMGESKFFTTL
FT                 DLKSGFHQIELAEKDREKTAFSINNGKYEFCRLPFGLKNAPSIFQRAIDDV
FT                 LRDGISKICYVYVDDVIIFSKTKEDHVKDVDWVLRKLLEAGMRVSQEKSKF
FT                 FKKSVEYLGFIVSQGGLRTSPEKVKAIKEFPLPKTLFELRSFLGLASYYRC
FT                 FIKDFATIARPLTNILKGENGKASKYQSRKIDIDMTKEQKETFNRLREILA
FT                 SEDVLLSYPDFKRPFDLTTDASGFGLGAVLSQDGRPITMISRALRDSEKNY
FT                 ATNERELLAIVWALKNLRNYLYGVKGLRIFTDHQPLTFAISDKNHNAKLKR
FT                 WKGIIDDHGAKLVYKPGKENLVADALSRQKINVLNDEQSDVATIHSEQSLT
FT                 YTIDITDNPVNCFRNQIIIEEGNSFSVDTFILFKSKVRHIIRISKRENLLN
FT                 ALQDVVNAEVVNAIHCSLPILAFIQHRLVELFPSTTFKHAKSFVQDITDAT
FT                 EQREIVITEHNRAHRAAQENVKQILRDYFFPKMLRLATETTLNCKTCSMAK
FT                 YNRHPSKQAVAETPIPSYVGEILHIDIFTTDGTLFLTCIDKFSKFATVQTV
FT                 ASRAIVDVKSPLLHIINFFPKIRTIYCDNERSLNSETIKTMLLNHFNITIS
FT                 NAPPLHSTSNGQVERFHSTLAEIARCLKLETGLNDTTELILLATNKYNNSI
FT                 HSVTNEKPIEIIHSKSAVFEGKISRKIKQAQEKTLDQVNKNRTYKDYQVGE
FT                 KVFLKTNKRLGNKLSPLCSEETIEADLGTTVLIKGRVVHKDNLR"
FT   CDS           4845..6431
FT                 /product="Gypsy-1_DSe-I_3p"
FT                 /translation="MFRRNHRGRPWNHGPNKGEGGPQGQSTINIFARVLTP
FT                 FPIFLYLFRLRYPTLILILIAVKTDATVRLNDYTNADYIPIEDNEIVIWES
FT                 YGYLQHSTNITTYEDYADQTETMTRTFTDDHRTPVIMTDLTHIRKLVATLR
FT                 FHHRTARSLNLIGTALKVIAGTPDFNDWEEIKFNQEQLIRTEESQTELNIK
FT                 FQTRLNELATTMNQISKTETNKETHLLEIILAKNRIVITDLENILMGLTLA
FT                 KLNIVSPSILDETDIGEFRDKQPIDISLIELLEVSSISVFQNTEILHFLIK
FT                 FPNPKIKCKKITIFPVQHNNKILNFDDGNLVAECRSRNINIGNCKTTVGAT
FT                 FCKELQNGTCAQQIISGAFAHCSTLPGHLDPVTIVDHGTLIVNDANVTITD
FT                 NQGKDQKVSGTYLVTYTEKVALNGTWYINQLGNSDKKPAVSVIAVVNVTAH
FT                 QNRLSLPLLHELSLRNLHHIGTLREKLTLGSLLSNSLAILAGFLLCSTIWL
FT                 SYHHLKTRGHTKPGDNSDVEQVGHRDGDLLKGG"
XX
SQ   Sequence 6433 BP; 2281 A; 1411 C; 1287 G; 1454 T; 0 other;
     gtcgcccaac gaagaaatcg gactcacgcg agacggaatt cgcgagaaaa aaaaaaaaac        60
     aatcacccga agtgaaaaga taaaaagtga aaaaactaaa atcacaaaaa attaaataaa       120
     ttggacagat cgaatcaaaa aaaaaaaaaa ccacccgaga ggaaaaggtc ccaactttca       180
     ccaagcggaa aattcttaac caaatagaga ggcagaagcg gcatcggcag cgacgacagc       240
     agcagcaact ggtggcgaag gaaagccgtc ggcaaaacac ctcgacaata aaattaattt       300
     attaacatgt gagtaggctt tttgtccaaa agttcgctaa taaatacggt ctcatgtgtt       360
     agaaaattta aataaagaat agtaaataaa aatacaccaa ccaactaaat gatatccagc       420
     aagttgtgga gttgaaattt tagcgaacca caaattaatt tgatattcaa ctcttgctaa       480
     gaaatacaac aaatacgtat aattaatatt ctacaaactc ttgatttagt tctataacac       540
     gcgcaaaatt ttttacataa agaactgtct catgtatagg gatactggga acatttcctc       600
     agacgaagaa gtcctagaac ttttacatag aaaagtgcca gaaataaata gaattgaaat       660
     ttcgtcaaac agtagggcaa cagaaatgca ggcggaacaa attgcgaata tggaggctgc       720
     catagcctgc gcacttcaaa ggcaggaaga actattcgaa gcaaaactga ccgcaattat       780
     gggggagtta agtttactta aaaataaaaa accgaaaatc cagacattcc aagaaatcga       840
     attgaatcca aacattgagt gtagtgagcc ccttgatatg gtcaagtctg ttccagaatt       900
     tgacggcaag caggaaaatt atgtttcctg gagacaggcc gccactgcag cctacaaaat       960
     atttgcgcct tacgaaggta gcagccgaca ttatcaggcc gtcggaatcc taaaaaataa      1020
     agtaagaggc ccagcgtctg ctgtattagc ctcatttaac acggtattta attttcacgc      1080
     cataatagcg cgcttagact tcacgtatgc ggacaaaact ccggcacacg taataaaaca      1140
     agaattaagt ttgtcaaggc agggagagtt acccctactc aaatactatg atgagataga      1200
     acggaagcta acgcttctta caaacaaaac aataatgaca cacgacgcag ccgcagcggc      1260
     cgtccttaat gagcagcaca gggatgacgc tttacacgcg ttcatatctg gcttaaagaa      1320
     atcattaaaa attgccgttt ttccggcaca accgcgggac ttgccatcag cattggcgtt      1380
     agctcaagaa gctgagtcaa gtaacgacag aagtattttc gcggccacgt tcgcccgaca      1440
     taacgaggaa agagcctata ggccaaacaa ccagaaacaa acaggttgga aaagttctca      1500
     gtcatacgga gaacccaaca aaaattcggg ggcgattaaa aagaaccctc attttgttag      1560
     aactctaaag ggaacaaacc atcaaagcgg ttcctttaag caaggcccac acaacagtgc      1620
     aggtaatggc caaagccaac cggcgccaga gccaatggaa gttgaccctt ccttccggtc      1680
     caaacaaacc acaacatggc aaagagggcg gtcggcacgg tctcagcaaa aaatcaactt      1740
     catgccggaa gaaaacaccg acgaagaaga ttatgactcc gttgctcagg caagcgccat      1800
     agaaatacag gacgagctgg atgcagagga ctcctgcaat tttttagggt aaagtccctg      1860
     ctcccttaca ttacacgtac ggtggcagga ggagaaataa aactattact agatacaggc      1920
     acctcaaaaa attatattac tccactcccg gggctgaaag gcgtcgtggc agcggaaaaa      1980
     ccctttactg taaagtcaat tcatggcttt accaaaatcg ataaaaaatg tatggtttcg      2040
     gtgtttaacg taaagacacc cttctttatt ctgaacaatc ttaaagactt tgacggtatt      2100
     attggtctcg acttacttaa acaagtaaat gcgaaacttg attttactgg aaatgtttta      2160
     aatactagta acggaactga aaagatccag tttgctaggg cggaaaacgt taacttcatt      2220
     aaaatcgacg atggagacgt tcctcttgct attaaaaact cgttcgataa aatgatagtt      2280
     aaaaatcaca aagccttcgc tgacccagac gaggcattac cattcaatat aaatactatc      2340
     gccacaatta aaacagatgg ggagccggta tactcaaaat catacccgca tcccatgggt      2400
     gtgaccgaat tcgtcaatgc ggaggttaaa caacttctag cggacggcgt aataaggcca      2460
     tccgaatctc cctacaacaa cccgacctgg gttgtagata aaaagggaac agaccaaaat      2520
     ggggtaaaaa agaagcgact agttatcgat tttaggaaac taaaccagag aacggttgac      2580
     gataaatacc ctatcccaac aatttcgaca atactgtcaa atatgggaga gtcaaaattt      2640
     tttacgacac ttgatcttaa gtcaggcttt caccagatag agctggcaga aaaagacaga      2700
     gaaaagacgg cattttcaat aaacaacggc aagtacgaat tttgtagatt accatttggg      2760
     cttaaaaatg ccccaagcat tttccaaagg gccattgacg acgtcctaag agatggaatt      2820
     tcaaaaatat gctacgtgta cgtcgatgac gtcataatat tctccaaaac aaaggaagac      2880
     cacgttaagg acgtggattg ggttttaaga aaactcttgg aggcaggcat gagagtatcc      2940
     caagagaaat caaagttctt taaaaagagc gttgaatact tggggttcat agtgtcgcaa      3000
     gggggtctac gaacctcacc tgaaaaggtc aaagccataa aagaattccc tttacctaaa      3060
     acgcttttcg aactcagatc atttctgggg ctagcaagct actataggtg ctttataaaa      3120
     gactttgcga caatcgcaag gcctttaacg aatatcctaa agggagaaaa tggaaaagca      3180
     agcaaatatc agtcaaggaa aatcgacatc gatatgacca aagaacagaa ggaaacgttc      3240
     aacaggttga gagaaatctt ggcatcggaa gacgtgctgc tttcataccc agactttaag      3300
     agaccatttg atttgacaac ggatgcgtca ggttttggtc taggagcggt actatctcaa      3360
     gacggccgcc cgatcacaat gatatcacgc gcccttagag atagtgaaaa aaattatgca      3420
     accaacgagc gagagctcct cgccatagtt tgggcactga aaaacctccg aaactactta      3480
     tacggtgtaa aagggttgcg gatcttcacc gatcaccaac cacttacctt tgccatctcg      3540
     gataaaaacc ataacgcgaa actaaaacgc tggaagggaa ttatcgatga tcacggcgcc      3600
     aaattggtct acaaaccagg caaagaaaat cttgttgcag acgcgctgtc tcgccaaaag      3660
     ataaacgttc taaatgacga acagtcggat gtagcaacga tacacagcga acagtcgcta      3720
     acttacacta ttgacataac ggacaacccg gtaaactgtt tcagaaatca aataataatc      3780
     gaagaaggaa acagtttttc ggtagacaca ttcatcttgt ttaaaagcaa ggtgagacac      3840
     ataataagga tttctaaacg agaaaatctt cttaatgcat tacaagacgt ggtaaatgct      3900
     gaagtagtta acgcaataca ttgctcccta ccgatcttgg catttatcca gcaccgatta      3960
     gttgaattgt tcccaagcac cactttcaag catgcgaaaa gctttgtgca ggacataacg      4020
     gatgcaactg agcagagaga aattgttata acagagcaca acagagctca ccgagcagca      4080
     caagaaaacg taaaacaaat cttgagggac tatttttttc ctaagatgct acggttagca      4140
     acagaaacca ctttgaactg caagacctgc tcaatggcta aatacaatcg tcatccatcc      4200
     aaacaagcgg tagcagaaac acctatacct tcctatgtgg gggaaatcct ccacatcgac      4260
     atctttacaa cagatggaac cctttttctt acgtgcattg ataaattttc gaaatttgcc      4320
     acagtgcaaa ccgtcgcatc gagggctatt gtggacgtaa aatctcccct attacacata      4380
     ataaatttct ttccaaaaat aagaaccatt tactgcgata acgaaagatc cttaaattcc      4440
     gagaccatta agacaatgtt gctaaatcat tttaatatca ccatttccaa cgcccctcct      4500
     ctgcacagca cctcaaacgg tcaggtagaa aggtttcaca gtaccctggc agaaatagcc      4560
     agatgcttaa agctggaaac tggcctaaat gacacaaccg aattgattct gttggcaacc      4620
     aacaagtaca acaattcaat tcactcagta actaatgaaa aaccgataga aattatccac      4680
     tcgaagtctg cggtattcga aggaaaaatc agcagaaaaa ttaaacaagc acaggaaaag      4740
     acccttgatc aagtaaataa aaatagaacc tacaaggact atcaggttgg cgaaaaggtg      4800
     ttcttaaaaa ccaacaaacg attagggaac aagctttccc cactatgttc agaagaaacc      4860
     atagaggcag accttggaac cacggtccta ataaagggga gggtggtcca caaggacaat      4920
     ctacgataaa catcttcgca agagtcctta ccccgtttcc aatcttttta tatcttttta      4980
     ggttacggta tcccactcta attcttatac taatagctgt taagacagac gcgacggtac      5040
     gacttaacga ctatacgaac gcagactaca tcccaataga ggacaatgaa atcgtcatct      5100
     gggaatcgta cggatacttg caacactcga caaacataac aacgtacgag gactacgccg      5160
     atcagacaga gacaatgaca aggacattta cagacgacca ccggacacca gtaattatga      5220
     cggacttgac acacattcgc aaattagtag ccactctaag attccaccat aggactgcta      5280
     ggagtttaaa tttgatcgga acggcactga aggtcattgc cggtaccccc gactttaacg      5340
     attgggaaga aataaaattc aatcaagagc agttaataag aacagaggaa agccaaacag      5400
     aattaaatat caaattccaa acacgattga atgaacttgc aacaacaatg aatcaaattt      5460
     ctaaaactga aacaaataaa gaaacacact tactggagat cattttagct aaaaatagaa      5520
     ttgttattac agatttagaa aatattctta tgggcttaac cctagcaaaa ctgaacattg      5580
     taagtccatc aattttagac gaaaccgata ttggcgaatt cagagacaaa cagcctattg      5640
     acattagtct aatagagcta ctagaagtat ctagcataag cgtattccaa aacacagaaa      5700
     ttttacactt tttaattaaa ttccctaacc ctaagattaa atgtaagaaa attacaatct      5760
     tcccggtcca gcacaacaac aagatcttga acttcgacga cggaaatctg gtggctgaat      5820
     gcagatcccg gaacatcaac atcgggaact gcaagacgac ggtcggcgcc actttctgca      5880
     aagaactgca gaatggcact tgcgctcagc agataatctc cggggccttt gcacactgtt      5940
     ctacacttcc cggccacctg gatccggtga ccattgtaga tcacggcact ctcattgtga      6000
     atgatgccaa cgtgaccata accgacaacc aagggaaaga ccagaaagtg tcgggtacct      6060
     acctggtaac atacaccgaa aaggtagccc tcaatgggac ttggtacatt aatcagctag      6120
     ggaattcaga taaaaaacct gctgtgtcgg tcatcgccgt tgtaaacgtc acggctcatc      6180
     agaataggtt aagccttcca ctcctccacg aactaagtct gaggaacctt caccacatcg      6240
     ggactcttag agagaaactc accttggggt ccctcctcag caattccctc gccatacttg      6300
     ctggcttcct attgtgctcc accatttggt tgagctacca ccacctaaag accaggggcc      6360
     acacaaagcc aggagacaac agtgatgtgg agcaagtggg tcaccgggac ggcgacctct      6420
     taaaaggcgg aga                                                         6433
//
ID   Gypsy-1_DSe-LTR repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   21-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DSe_;
KW   Gypsy-1_DSe-LTR; Gypsy-1_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-360
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (24-OCT-2011).
XX
RN   [3]
RP   1-360
RA   Bao W.;
RT   "Sequence corrected.";
RL   Direct Submission to Repbase Update (21-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: 99% identical to the consensus.
XX
SQ   Sequence 360 BP; 101 A; 91 C; 87 G; 81 T; 0 other;
     agttaacaca agcagttctc acggagtgaa actgctgaat tgcaggccat atccggtggt        60
     ctgcacgcgc actaaacaaa ctgctgatcg cgtactccag gtgcaattgc cccgagcccg       120
     cacggagcac tcgcggagcg agtgatcggg ctgacgcaga agtgctgacc tggccttctg       180
     ccagcagttc tgctgcggac cagaggcctg gagttgaacc gggactgaat tcttaagtta       240
     gttttaaatc atactccgag gcttacgcct tgtaattata aatacccaaa tattgtgacc       300
     ctcgccctaa cgggagagtg gtaaataaat ataaccaaac taaacaaacg acttataatt       360
//
ID   Gypsy-1_DSer-I repbase;    DNA;    INV; 4872 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4872
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2018-2018 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           830..4870
FT                 /product="Gypsy-1_DSer-I_1p"
FT                 /note="SAP motif, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MQLEEIMLMRCSDLRTKLGELHLVTTGRKRDLQDRLL
FT                 AHFGIQDDEDNDSDEVESVVTALDRSVQERRSLFTLKDVEGSVSIFAGTGS
FT                 PDVDQWIVELEECALTVEWNQLQIFIYAKQLLSGAAKSFIRSQVNIRNWDS
FT                 LKAALREEFAIKISSAEVHRKLGQRVQKKGETLQEYLYALMEIAKPVKLDE
FT                 ESLIEYFVKGVPDAKANKIMLYQAKTIKDLKEQMEVYKKVRGTYKVSYKNE
FT                 ERATETEGSKSLDSKPSFVRKCFKCGDSSHLKKDCKKRDNYNCFRCGQPGH
FT                 RAAQCTVEVKQESNTNAVHFESEASKPKSEFTVSGLELKVVKHSVVQFKGL
FT                 VDTGADLCLLRRNIFLKLGSKLLTGKEKCLTGIGESQVLTFGSITLPVEID
FT                 NIQMNVEFHVVPEEDMGFEAILGRTILEQVDMKVTKEGTEFLRRIESRNID
FT                 EEQSNMDIEFLQEFRGMCAEQVAVSDQVDLSHLNQFQKVEVKRVIEEYVPE
FT                 RNVNAPVHMKIILKDEIPVFQHPRRLPVCDQKTVDDQVKEWLAEKIIQPST
FT                 SEYASPVVLVSKKNGKKRLCCDYRKLNEKIIRDNFPMAHMETVLDKLQGFK
FT                 IFTTLDLTNGFFHVPIEPGSRKYTSFVTQSGQFEFLYVPFGISNSPAVFTR
FT                 FIMAVLRDLIVTKMVVVYMDDVIIPSQDIEEGLVKLKEVLEVAARNGLRIN
FT                 WSKCQLLHSRVQFLGYIIQGGNITPGPEKIQAVKDFPDPRDKKSIQRFLGL
FT                 TSYFRKFIEGYATIARPLSDLLKGDAKFEFGEKQRLAFEKLKTALISEPVL
FT                 KLYNPTLQTEIHTDASKYGFGAVLLQKDPEDSLFHPVQYMSRKTSPFEEKY
FT                 DSYELEVLAIIGALVKWRVYVLGINFTIVTDCNAFKMTMNKREVPLRVARW
FT                 ALYLQDFNYKIEHRSGTKMKHADALSRVSCFFLSDSITHRLKEAQTKDEWT
FT                 QAVRSLVERDTYQDFYMENDVLXKDPNRELVVVPSSMENEIIQKAHNQGHF
FT                 SARKTQELIEKSYYIPKLKEKTERNVESCIRCIIVNAKAGKKEGFLTSIDK
FT                 GDRPFITYHIDHVGPMETTTKRYNHILVVVDGFSKYVWLYPTRSTGVDEVV
FT                 SSLEKQAVHFGNPCRIVTDRGTAFTSQAFKEYCESNNIQHLLIATGVPRGN
FT                 GQVERIHKIVVPMLAKLSYESPFAWYKHVGRVQQIINSTEPRSTRITPFKL
FT                 LTGVEMRLTDCSELKDLMQEFAVKELDEEREKYRQTARESIKQLQEENKKA
FT                 FDLKRKQERVYKVNDLVAIKRTQYGVGLKLKGKFLGPYKIVAVKDHGRYEV
FT                 ERIGDTEGPFKTSTVSEFMKPWPGPFGANEQSGGP"
XX
SQ   Sequence 4872 BP; 1551 A; 891 C; 1260 G; 1167 T; 3 other;
     atttgggggc tcaaccggga ttgacccaaa cattaagtgc aagacaatta gagattggcg        60
     aagtgcgttt tcacacacaa atacatatga acaaagattg cgaattgtgg tgaaatacca       120
     aaagctggag gaaacggcat gagtacagtt gcagattcct aagaaaacga cggcgaagag       180
     cagcatttct tggcatgtgt gagtgcatgt gagacgagct ggaaaacgtg cagacagacg       240
     cttgtagaag tagcgactgc agtccaggag gcagtgcgtc aaagatcgtc agagcggcag       300
     tcggagatcc ggccggtcac ggtgaactaa tttgcaaagg ctgatctgtg gaaggcgttg       360
     ggagcagcgt taggcagagg cgagcggagc aagtcaggag cgtgaggcgg agactggaag       420
     agctgaggcg aggtgacgaa atctggagca ggctggagca gacggagcaa gcaggctgga       480
     gcaggcggaa caagcgggca agcagcgacg gttacaatct ggagggcacg aagcctccat       540
     cagtgggcaa gcaaatcctt gtggcgaggc agttggccag gagatctggg taagcaagca       600
     gtttggagca ggcggatctt cctagaagaa ctgaggcgag gtgacgaaat ctggagagca       660
     gatctacata tgtatatagt aaccgatata cgataagcag tgcgatataa gcagtgcatc       720
     gaaataggtg caaaccggaa ctgaaaacca attggaattg tctggcaagc agtccaagca       780
     gattttacca ttaagataat atcaaccatt gtaaacaaaa tttctcaaaa tgcagctcga       840
     ggaaataatg ttaatgagat gtagcgattt gcgcacaaag ctaggagaat tgcatttagt       900
     aacaaccggt aggaagcgcg atttacaaga taggcttctt gctcattttg gcattcagga       960
     tgacgaagat aacgattctg atgaggtcga atctgtagtt accgctctcg atcgtagcgt      1020
     gcaggaaaga cgttctttgt ttacactcaa ggacgtagaa ggcagcgtat caatttttgc      1080
     aggaacaggt agcccagatg tagaccaatg gatagtggag ttagaggaat gcgctttgac      1140
     agttgagtgg aaccagcttc aaatattcat ttacgccaag cagttgctca gtggagccgc      1200
     aaagtcattc attcgtagtc aggttaatat tcgcaactgg gattctctta aggcagcatt      1260
     gcgtgaggaa tttgccatca aaatatcgtc tgctgaggtg catcgtaagc taggtcaacg      1320
     ggtgcaaaag aaaggagaaa cattacaaga atatttgtat gctttaatgg aaattgcgaa      1380
     gccagtcaaa ttagatgaag agagtttgat tgagtacttt gtgaagggag tgccggatgc      1440
     aaaggcaaat aagataatgt tgtaccaggc taaaacgata aaagatctaa aggagcagat      1500
     ggaagtctac aagaaagttc gaggcacgta caaggtatcg tacaagaatg aagagcgtgc      1560
     aacggagaca gaaggatcaa aaagtttgga ttcgaaaccg agttttgtac gtaaatgctt      1620
     taagtgcggg gattcgtccc acttaaagaa agattgcaag aaaagggaca actacaattg      1680
     ttttcgttgc ggacagccag gtcatcgtgc tgcacagtgc acggtcgagg tgaaacagga      1740
     gagtaacacc aatgccgttc acttcgagag tgaagcctcg aaaccaaaga gcgagtttac      1800
     tgtttccggc cttgaactaa aagttgtcaa gcattccgtc gtccaattca aaggacttgt      1860
     cgacacaggt gcagatttat gtttactgcg caggaatatc ttccttaagc tgggcagcaa      1920
     acttcttact gggaaagaga aatgcttgac aggaataggc gagagtcagg tgttgacgtt      1980
     tggaagcata actctgccag tcgaaataga caacatacaa atgaatgtag aattccacgt      2040
     agtaccggag gaagacatgg gcttcgaagc tatattgggc agaactattt tggagcaagt      2100
     ggacatgaaa gttaccaaag aaggcactga gtttctgcgt cggatcgaat cgagaaatat      2160
     tgacgaggag cagagcaaca tggatataga gtttctgcag gagtttaggg gcatgtgcgc      2220
     agaacaggtg gcagtttcag atcaggttga tttgtcccat ttaaatcaat ttcagaaggt      2280
     cgaagtcaag agagttattg aagaatatgt acccgaacga aacgtaaatg caccggtaca      2340
     tatgaaaata attctaaagg acgaaatacc agtttttcag catccacgtc gtttgccagt      2400
     ctgtgatcag aaaacagttg atgaccaagt taaggagtgg cttgctgaga aaattatcca      2460
     accgagtact tctgaatatg catcgccagt agttttggta tcgaagaaga acggaaagaa      2520
     acgtctgtgt tgtgactatc gaaagttgaa tgaaaagatt attcgagaca attttccgat      2580
     ggctcacatg gagaccgttt tagacaagct acaagggttc aaaatattca cgactttgga      2640
     tttaactaac gggtttttcc acgttccaat tgaaccaggt tctcggaagt atacgtcatt      2700
     tgtgacacag tcaggacagt ttgaattttt atatgttcca tttggcatat ctaattcacc      2760
     ggcagttttc accagattta tcatggcagt tctaagggac ctcatcgtca ccaaaatggt      2820
     tgttgtgtat atggacgacg taattatacc cagccaggac attgaagaag gacttgttaa      2880
     gttaaaggag gtactagaag ttgctgctag aaacggtttg cggatcaact ggagtaagtg      2940
     ccaactatta catagcagag tacagttttt aggatacatc atccaaggtg gaaatatcac      3000
     tccaggtccc gagaagatac aagccgtaaa agattttccc gatccacgcg acaagaaaag      3060
     tattcaacga ttcctaggtc tgacttcata tttcagaaaa ttcattgagg gatatgctac      3120
     tattgccagg cctttgtcgg atttgttgaa aggtgatgcc aagtttgaat tcggggaaaa      3180
     acaacgattg gcgtttgaaa agttgaagac tgctctcatc agtgaaccag tcctcaagct      3240
     atacaatcca actttacaaa ctgagatcca tacagatgcg tccaagtacg gttttggagc      3300
     agtcttgctg cagaaggatc ccgaagacag tttatttcat ccggttcaat atatgagccg      3360
     aaagacttca ccatttgagg agaaatatga ctcgtacgag ctggaggtgt tagctatcat      3420
     tggagctcta gtgaagtggc gtgtttatgt gttgggcata aatttcacaa ttgttacgga      3480
     ctgtaacgcg ttcaagatga ccatgaacaa gagggaagtt cctcttcgcg tagctcgttg      3540
     ggctttatac ttgcaggatt ttaactacaa gattgagcat cgttccggta cgaaaatgaa      3600
     acatgcggat gctctgagtc gagtctcgtg tttcttttta tcagactcta taacccaccg      3660
     tttgaaagaa gcccaaacta aggatgaatg gacacaagca gttagaagtc ttgtmgaaag      3720
     ggatacatac caagatttct acatggagaa tgacgttctt ttmaaagacc cgaatcgcga      3780
     actagttgtt gtaccttcgt cgatggaaaa tgaaataatt caaaaagcgc acaatcaagg      3840
     acatttctca gccaggaaga cacaagaact tatcgaaaag tcgtattata tccccaagtt      3900
     aaaagaaaag acagagcgaa acgtcgagag ttgcatcaga tgtataattg taaacgccaa      3960
     agcgggtaaa aaggaagggt ttcttacttc aattgacaaa ggtgaccgac ccttcataac      4020
     ataccacatt gatcacgtcg gaccaatgga gacaacgacc aagcgctaca atcatatcct      4080
     ggtcgtagta gatggntttt cgaagtacgt ttggctctac ccaactcgta gcacgggtgt      4140
     ggatgaagtc gtaagcagtc tggagaagca agctgtacat tttggaaatc cttgccgcat      4200
     agtgaccgac agaggcactg cttttacatc tcaagcattc aaggagtatt gcgagtcgaa      4260
     caatatacag catttgctca tagcgacagg tgtaccgcgc ggaaatggcc aagtcgaaag      4320
     gattcacaag atcgtcgtac caatgcttgc aaagttgagt tatgaaagtc cttttgcatg      4380
     gtataagcac gttggaagag ttcagcagat tataaacagc accgagccaa gaagtaccag      4440
     gatcacgcct tttaagcttt tgacaggagt tgaaatgcga ttgaccgact gcagcgagct      4500
     gaaagatttg atgcaggagt ttgcagtaaa agagttggat gaagaaagag agaaatatcg      4560
     ccaaacagcc agagaaagta tcaaacagtt gcaggaagag aataagaaag cgtttgattt      4620
     gaaacggaaa caggaaagag tttataaagt caatgaccta gtagcgatta agaggaccca      4680
     gtacggagta gggttaaagc ttaagggaaa gttcttaggg ccatacaaaa tagttgctgt      4740
     caaagatcat gggcgatatg aagttgagcg tataggggac acagagggtc cgttcaaaac      4800
     atcaaccgtt tctgaattca tgaagccatg gccaggtcca ttcggggcga atgaacagtc      4860
     aggagggccg aa                                                          4872
//
ID   Gypsy-1_DSer-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-297
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1989-1989 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 297 BP; 106 A; 42 C; 63 G; 86 T; 0 other;
     tgtgggattc gaaataggcg ggtttccttc gcggcgtact agaagcgggt taagctatct        60
     ggcaacccat aattagtttc gatatttaga taataaccga tagttttaag acctaataat       120
     aaaagctaga agtaagagag tcgtcgtttg agagagctag tgagaagttg tgaaaagaag       180
     acgctgtgtg tgaaaacaaa agaaaatgaa cttgtgaacc taatctaagc acttatgttt       240
     aaaccaatct tgtaaataaa ttattgtatg tgaattatta aactaaattc ccctaca          297
//
ID   Gypsy-1_DSim-I repbase;    DNA;    INV; 7021 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DSim_;
KW   Gypsy-1_DSim-LTR; Gypsy-1_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7021
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1496-1496 (2012).
XX
RN   [3]
RP   1-7021
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   Positions [4463-4933] - Integrase core
CC   LTRs are 98% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           801..2144
FT                 /product="Gypsy-1_DSim-I_1p"
FT                 /translation="MATGGSVSTLSAGGISSASNLTMELINRLINVQLSEV
FT                 TRKLEGLEEQLAANKNEVEDYKIQTIDRTIKCETTLEVIKSLPKFTGEITQ
FT                 YVGWREAAETAMSLYKIESEQYFIALTILRNKIMGAAHDALTNHGTVLNFQ
FT                 AILSRLDFIYNDKRPIHILESELSILRQGRMTITEFYNEVNKKMTLLINKT
FT                 IMTYGKDSLITKETNKTIRSNALRIFISGLNGSISETLFSLNPPDLPNALA
FT                 KCQELESNNFRAQFANRYNGFRSENRNQGNNLRFAPRQINNTPNRVNNNWP
FT                 QNGNFGGNNNWNFNNNSKVQQPPHHNFGANNNWNFNNNSKVQPPPEPMEVD
FT                 DSIRVQNRPYKNYNHPRNNNNQWSYNNNRHNFNNNFQRNNYNQYPAQKHNT
FT                 SAGLVNQSETHPPIKRESTGTVNQPAHKTMRVNNINENHFLDQHLTEGCLI
FT                 SQG"
FT   CDS           2126..5551
FT                 /product="Gypsy-1_DSim-I_2p"
FT                 /translation="MPHITRVDRKTKRQFKILIDTGATACYIKKGIYENKR
FT                 ELSIHKRVSTVHGYSIIKYYHLINIFGEQHLFYEIEGLESDLLIGFNLLRK
FT                 IGAKLDIEKGIMEYKGNKEKLQYFDEDKNDLCLIEEKNILPLKEYIIKKYL
FT                 DEQKIYKTETVIAEGSLYSLGSMNPEHASVDLSANKKYISLGLKNPEHASV
FT                 DLSANKQYISLGLKNPEQADDVNSVSLKSNSLESTNTEHAVVEFSDKEKIH
FT                 NLNIISNQIKEFENKVMNKIEKEHSKINTQIPFRTDIRGEINTVNDRAIYS
FT                 KQYPYAMSVSDFVNNEIDRMLKEQIIRPSRSPYNSPVLVVPKKGQNEDGSP
FT                 KHRLVIDYKKLNESTIPDRYPMQDPSVILSNLGKSKYFSTIDLESGFHQIL
FT                 MKNSDIEKTAFSINNGKFEFLRMPFGLTNAPRIFQRAMDDILREQVGKTCH
FT                 VYMDDIIIFSNTIEQHYTDLIQIINILQQANMKISLEKSKFFKLETAFLGY
FT                 IVSHNVIKTDPEKISTIMKYPIPQNIRELRSFLGLTGYYRKFVRNYAKIAK
FT                 PLTKYLGGDNGKISRRMSTKITIQLDDPAVKAFKELKDNLIAQVELVQPDY
FT                 NKKFTLTTDASDVAIGAVLSQDNKPITFISKTLNKTEQLYATNKKELLAIV
FT                 WALKNLRNYLYGVIGIEIQTGHQSLSFTISDKNPNVEMKRWYSFIESFTPK
FT                 IIYKPGTTNVVADALSRIKINNITNSDLEQSNSDQNTQHSAESSFENVIQE
FT                 TRKPLNQFQQQLLLTKGRYTIHESLNVFDKTRHIIEYDTPENLIEILREYL
FT                 KPNITVGIHCTLEDLYHIQLPLKNNFTNKFLYTKIFLQDVENNEDKAIIIE
FT                 ETHSRAHRGLDENYKQINRLFYWPNLYIKLKEYIKNCTICNENKYNRHPIK
FT                 IPIGEAPIPTKEGENLHIDIFYAQSLIFLTCIDAYSKFLVVKEIQNKLNIE
FT                 NKVMELLQHFPHAKVIMTDNEPSFTSAQFKSFAQRCGLTLHFADPRHSTSN
FT                 GQVERAHSTLTELARCIKEEFNLTDYSEIIIRAAKEFNQSIHSTTNQKPFD
FT                 ILYNKIDHENISRILKNTQEKMLVTHNEGRKEKEYHVGQVVYEKKHGERNK
FT                 LKTRYKKQVVKENLPNKVIINNRNRTIHKDNIKF"
FT   CDS           5590..7020
FT                 /product="Gypsy-1_DSim-I_3p"
FT                 /translation="MHFVLLLITFVMITTSEIIDYSNHEFFLFKDKKDVLT
FT                 YESYADLYHVTNLSFYKEIINLESGYVRKDKNTRTQWEITYEIQIIELILS
FT                 QLIPTRSKRGINELGTVWKWLAGTPDHDDFIKIQNKINDLIENNNQQFIIN
FT                 SKLFKEIKSLSDHFKNIFIDQELPLRKHRLRLLTFDLQNIIDTITLAKIDL
FT                 FNTKILNNEDIKEILDHEQQPVLIADLMDIAIFKIVLHKELLIIYIKYPVI
FT                 TNRCEIYYARSISHNDGKLLISNQVAKCENTFYEISNFKNELLNNYCIISK
FT                 DKTCFTRLLNGEKSICTKILEKNKNIDIIQEGAILINGNNIVNDSHLNGSY
FT                 LITFNSTTTINNISYTNSENKILEYITTNHFKNLEISEYIKSNNSELSLDN
FT                 INILNPFIEIYNWKISISFILLILIILYFITILIIKFRYYIFVTKQKRPEP
FT                 EKPNNDVEFLTELNERLNEINNEAGRVILEGG"
XX
SQ   Sequence 7021 BP; 2977 A; 1156 C; 1014 G; 1871 T; 3 other;
     ggcgcccaac gtggggcggc gtattcaaaa gttctaaata aatattaacg ataataagtt        60
     aaaaataaaa cggaactcgc gccgccaaca atccatattt ttagtggaaa aattaaaaca       120
     tccacaacaa tacaacgaca cctaactaca gtgaaagtga tcgtgaaact taattggaaa       180
     tcaataaatg taataatcca attaagaatt taacataaaa aggtggactg aatacttmat       240
     acaaattacg agaccataat aataataaac ataacataaa cataacataa taataaaaat       300
     tcagaactca actacgaacc caaagaaatt caaacaaatt caatttcaaa attcaaattc       360
     aaaaataaaa aggctatata aaaaatttga aggaagaccc caataaataa ttatcaagac       420
     gacccaattg aaggaagact caaaaaagaa ttattaagaa caaccaattg aaggaagact       480
     caaaaaagaa ttattaagaa caaccaattg aaggaagact caaaaaagga tattaagaac       540
     aaccaattga aggaagactc caaaaaagga atcattaagg acaaccaatt gaaggaagac       600
     ccctatcccc caccaactac actgaaggaa gaactcccac ggaaagtatc gtgagcagat       660
     aaaaacaaca ctaagtctct aaataaaaat taagattaag atacagagaa tactacttta       720
     aaattaaata ttacaatatc aatttaattt gaaacaatct ggaagatttg ataaatagtt       780
     ttgataattt aaatttaaca atggcaaccg gaggttcagt atcaaccctt tctgcgggcg       840
     ggatatccag cgccagtaat ctgacaatgg aattaataaa cagattaata aatgtacagt       900
     tgagtgaagt aaccagaaaa cttgaagggt tagaagagca gttagccgct aacaaaaatg       960
     aggtagaaga ctataagatt caaacaatag accgaaccat aaaatgcgaa actacattag      1020
     aagtaattaa atccttacca aagttcacag gagaaataac acaatatgta ggctggagag      1080
     aagcggcgga aaccgcaatg agtctatata aaattgaaag tgaacaatat tttatcgcct      1140
     taacaatttt acgtaataaa atcatgggag cagcacacga tgctctaacc aaccatggta      1200
     ccgttttaaa ttttcaagca attctttcaa gattggattt tatctataac gataaaagac      1260
     caatccatat acttgaatcc gaattaagca tcttaagaca gggacgcatg accataaccg      1320
     aattctacaa cgaagtaaat aagaaaatga cgttacttat aaataaaact ataatgactt      1380
     atggaaagga cagccttata accaaggaaa caaataaaac aattaggagc aacgcgctaa      1440
     gaatttttat ttctggatta aacggttcaa tctcagaaac actcttctct ctcaacccac      1500
     cagatttgcc aaatgctttg gcaaagtgtc aggaattaga gtctaacaac tttagagctc      1560
     aatttgcaaa taggtataat ggatttagga gtgaaaacag aaatcaagga aacaacctta      1620
     gatttgctcc tagacagatt aataatacac caaatagggt aaataataat tggccgcaaa      1680
     acgggaactt cggagggaat aacaattgga attttaataa taattccaaa gttcaacaac      1740
     caccacacca caacttcgga gcgaataaca attggaattt taataataat tccaaagttc      1800
     aaccaccacc agaacctatg gaagtagacg actccataag agttcaaaat cgtccgtata      1860
     aaaattataa tcatcctagg aataataaca accagtggag ttataataat aaccgacaca      1920
     attttaataa taatttccaa agaaataatt ataatcaata cccagcgcaa aaacacaaca      1980
     caagcgcagg tcttgtaaat cagtccgaaa cacacccccc gataaaacgg gaatcaacgg      2040
     gaacagtcaa ccagccagct cataaaacaa tgagagtaaa taatatcaac gagaaccatt      2100
     ttttagatca gcaccttaca gagggatgcc tcatatcaca agggtagaca gaaaaactaa      2160
     aagacaattc aaaatattaa tagacacagg agccaccgcg tgctatataa aaaagggtat      2220
     ttatgagaat aaaagggaat tatcaataca caaaagagta tctacagttc atggatattc      2280
     aatcataaaa tattatcatt tgataaatat atttggggaa caacatttat tctatgaaat      2340
     tgagggttta gaatctgatc tattaattgg attcaatttg ttaagaaaga ttggagctaa      2400
     attagatatc gagaaaggaa tcatggagta taagggaaat aaagagaaac tccaatattt      2460
     tgacgaggat aaaaacgatt tgtgtttaat tgaggaaaaa aatattcttc cattaaaaga      2520
     atatataatt aaaaaatatt tagatgagca aaagatatat aaaaccgaaa cggtaattgc      2580
     tgaaggcagt ttatatagct tgggatcaat gaatcctgag cacgccagcg tagatttatc      2640
     cgctaataaa aaatatatca gtttgggatt aaaaaatcct gagcacgcca gcgtagattt      2700
     atccgctaat aaacaatata tcagtttggg attaaaaaat cctgaacaag ccgacgatgt      2760
     taattccgtc agtcttaaat caaatagctt ggaatccaca aataccgagc acgcagtcgt      2820
     tgagttttcc gacaaagaaa aaattcataa cctaaatata atttcaaatc aaataaaaga      2880
     atttgaaaat aaagttatga acaaaattga aaaggagcat tctaaaataa atacgcaaat      2940
     tccttttcgt accgatattc gaggagaaat aaatacagtc aatgacagag caatttatag      3000
     caagcaatat ccttatgcta tgtcagtctc agatttcgtt aataatgaaa tcgatagaat      3060
     gctaaaagag caaattataa gaccaagtag aagcccctac aattcaccag tcttagtagt      3120
     gcccaaaaaa ggtcaaaacg aagatggatc tccaaaacat cgattagtta ttgactataa      3180
     aaaattaaat gaaagcacaa tacctgacag atatccgatg caagatccgt ctgtaatatt      3240
     atctaactta gggaagtcaa aatatttctc aaccattgat ctggaatcag gattccacca      3300
     aattttaatg aaaaattcag atattgaaaa aacagcattc tctataaata acggaaaatt      3360
     tgaattctta cgtatgccat ttgggttaac aaacgcccct agaatatttc aaagagcaat      3420
     ggatgacata ttgagagaac aagtcggaaa aacttgtcat gtttatatgg atgatataat      3480
     aatcttttct aatacaattg aacaacatta cacagattta attcaaataa taaatatttt      3540
     acaacaagca aatatgaaaa tttctctaga aaaatctaaa ttctttaaat tagaaacagc      3600
     atttctaggt tatatagtat ctcacaatgt aattaaaaca gatcctgaga aaatctccac      3660
     aattatgaag tatccgattc cacaaaacat tagagaactt cgaagttttc taggcctcac      3720
     cggctactac cgtaaatttg tccgaaatta tgcaaaaatt gcmaaacctt taaccaaata      3780
     cctaggagga gataatggaa aaatttctag gagaatgtcc acaaaaatta caatacagtt      3840
     agacgaccca gctgttaaag cttttaaaga acttaaagat aatttaatag cacaagtgga      3900
     attagttcaa ccagattata acaaaaaatt cactttaacg acagacgcat cagatgtagc      3960
     tatcggagca gttttatcac aggataataa accaattact ttcatatcca aaactttaaa      4020
     taaaaccgaa caactttatg ccacaaataa aaaagaattg ttggcaatag tttgggctct      4080
     taaaaatctc aggaattact tatatggtgt aattggtata gaaatacaaa caggacatca      4140
     atctttatct ttcacaatct cagacaaaaa cccgaacgta gaaatgaaaa ggtggtactc      4200
     ctttatagaa agtttcaccc cgaaaataat atataaaccc ggaacaacta atgtcgtagc      4260
     cgacgcatta tctcgaataa aaataaataa tattactaac agcgacttag aacaatcaaa      4320
     ctcagatcaa aatacacagc attctgccga aagtagtttt gaaaatgtaa tacaagagac      4380
     ccgaaaaccg ttaaatcagt ttcaacaaca actgttatta acaaagggga ggtatacaat      4440
     acatgagtca ttgaatgttt ttgataagac aagacatata attgaatatg atacgccaga      4500
     aaacttaata gaaatattaa gggagtatct aaaaccaaac ataacggtag gaattcattg      4560
     cactttagaa gatctttatc atattcaatt accattaaaa aataacttta ccaacaaatt      4620
     tctttatact aaaatatttc tacaagacgt ggaaaataat gaagataagg ctatcataat      4680
     agaagaaaca catagtcgtg ctcacagagg attagacgaa aattataaac aaatcaatag      4740
     attattttat tggccaaatt tatatatcaa actaaaggaa tatataaaaa attgcacaat      4800
     ttgcaacgaa aataaataca accggcatcc tattaaaatc cctattgggg aagctcctat      4860
     tccaactaaa gaaggagaga atttacacat cgacattttt tacgcgcaaa gtcttatttt      4920
     cttaacctgt attgacgcat attcaaaatt cctcgttgta aaagaaattc aaaataaact      4980
     aaacatcgag aataaagtaa tggaattact ccaacatttt ccccacgcca aagtaattat      5040
     gactgataat gaaccgagct tcacctctgc tcaatttaaa tcctttgcac aaagatgtgg      5100
     tttaactcta catttcgccg accccagaca cagtacctcg aacggacaag tagaaagggc      5160
     acattcaaca ttaacagaat tagctcgttg tataaaagaa gaattcaatc tcactgacta      5220
     ttccgaaata attattagag ccgcaaaaga attcaatcaa agcattcatt ctacaacaaa      5280
     ccaaaaaccc tttgatattc tatataataa aattgatcac gaaaacattt caagaattct      5340
     aaagaacaca caagaaaaaa tgttagtaac ccacaatgaa ggtcgcaaag aaaaagaata      5400
     tcacgtaggt caagttgttt atgagaagaa acacggagaa agaaataagc taaaaaccag      5460
     atacaaaaaa caggttgtta aggaaaactt acctaacaaa gttataataa ataatagaaa      5520
     caggactatt cacaaagaca acattaagtt ttaacaaata ccgtattttt ttttattaaa      5580
     ttacagaaaa tgcatttcgt attactttta ataacattcg taatgataac cacttcagaa      5640
     ataattgatt actccaatca cgaattcttc ctgttcaaag acaaaaagga tgtccttacc      5700
     tatgaatcat atgctgactt ataccacgta actaacttaa gtttttataa agaaataatc      5760
     aatctagaat caggatatgt aagaaaagat aaaaatacac ggacacaatg ggaaatwact      5820
     tacgaaatac agataataga attaattttg tcacaactga taccaactag atcaaaaagg      5880
     ggaataaatg agttaggcac tgtttggaaa tggttagctg gaactccgga tcacgatgat      5940
     ttcattaaaa tacagaataa aataaatgat ttaattgaaa acaataacca acaatttatt      6000
     attaattcca aattgtttaa agagataaaa tcactttccg atcattttaa aaacattttt      6060
     atcgatcaag aattgccatt aagaaaacat cgtttacgtt tattaacatt tgacttacaa      6120
     aacattattg atactatcac actggccaaa attgatttat tcaacacaaa aattttaaat      6180
     aatgaagaca ttaaagaaat attagatcac gagcaacagc ctgtacttat tgcagactta      6240
     atggacatcg ccatattcaa aattgtattg cataaagaac tcttaataat ttatataaaa      6300
     taccccgtta taacaaacag atgcgaaatt tactatgcca gatccatttc acataatgat      6360
     ggaaaattac ttataagtaa tcaggtcgca aaatgcgaaa atacctttta tgaaatatct      6420
     aattttaaga acgaactttt aaacaactat tgtattataa gtaaagataa gacttgtttt      6480
     acccgcttac taaatggaga aaaatcaatt tgcactaaaa ttctagaaaa aaataagaat      6540
     atagatatca ttcaagaagg tgccattcta ataaatggaa ataatattgt gaacgattct      6600
     catttaaacg ggtcatattt aataacattt aacagcacaa ctacaataaa taatatttca      6660
     tacaccaatt cagaaaacaa aatacttgaa tacataacta ccaaccactt taaaaactta      6720
     gaaatatcag aatatataaa atccaacaat tcagaacttt ctcttgacaa cattaatatt      6780
     ttaaacccat ttattgaaat ttacaattgg aaaatttcaa tttcatttat attattaatt      6840
     ttaatcattt tgtatttcat tactatatta ataataaaat tcaggtatta tatatttgta      6900
     accaaacaaa aacggccaga accagaaaaa ccaaataatg atgtagaatt tttaacagaa      6960
     ttaaatgaac gtttgaacga aattaataat gaagcgggac gcgtcatttt agagggggga      7020
     g                                                                      7021
//
ID   Gypsy-1_DSim-LTR repbase;    DNA;    INV; 533 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DSim_;
KW   Gypsy-1_DSim-LTR; Gypsy-1_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-533
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1497-1497 (2012).
XX
RN   [3]
RP   1-533
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: Sequence updated.
XX
SQ   Sequence 533 BP; 184 A; 105 C; 90 G; 154 T; 0 other;
     agttatccaa cccacgaaca tagctccctt ccacaattta taaacaaatt ccaattctca        60
     atctcgtcgg catttccttt gtctttgttt ttgtcattgc ctttgccagc acccagctac       120
     ccgctaacat aagcaaccca aacataacgt aaacacagct tccgcttgga gaccaagcca       180
     cggccgactt attgcgtatc aatcaaaaat tgcatcgatc agcataattg aatttcacaa       240
     tgcagtggaa aatttccagc ataaagcttt tatcgaaagt tcggtaattt tccgaaagaa       300
     aagcttctgg ccgaggttga ttggattagg acttagaatt ttaagatcag tctgaatcgg       360
     gagtctgaaa gagtcgggag tctgaatcgg gacgagatcg tctacagctc gaagctaaag       420
     ttaactaagt gtctcgtaat agtataagtg aaaaagttta tcaccaaata aatgttaaat       480
     aataaaaaat aaaatttatt tttttaaata aataaagagt aacaaattta att              533
//
ID   Gypsy-1_DTa-I repbase;    DNA;    INV; 4775 BP.
XX
AC   .
XX
DT   26-JUL-2011 (Rel. 17.08, Created)
DT   26-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DTa_;
KW   Gypsy-1_DTa-LTR; Gypsy-1_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4775
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1610-1610 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2217-2723] - Reverse transcriptase
CC   'TTTTTT' target site duplication
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..1851
FT                 /product="Gypsy-1_DTa-I_1p"
FT                 /translation="MDLNKVSIKQLKIWLSVLKCSTTGSKQELILRLNKLP
FT                 SEKRNKFNEMKENRDGERSKGEDGGKEKFQERDGDRSNCKDGGIENFEEED
FT                 GGKSNNEDGGKEDYEVEEGDEINSEDGEGKNKVGEKNDKGEDGEKVREYIR
FT                 EDGENESEAGEETRGERSYERDGEQNKGGGRNRNCAEVNMQNQAGEKEKME
FT                 NNFNQSIDISLRMATQVLCEFAGESCARKWITRIYNIASIYGITGNYIKML
FT                 MISKIKGKANVWLHANAGRVLLPLEELTAELIAMFGEKSSKLEIRRKFEHR
FT                 KWSAGETFGSYVDDKIMLAQGINIDGDEMLSCIIEGITNQGLRNLAHIQSF
FT                 VDVGHIKRAFADVRLPKSVGKPMTSLDFKDKKETRCFNCNAKGHWANECRK
FT                 SKREKGSCYACGEMGHFVATCLKSKNKNTGNNNYVRYVEINFMNDINTKLT
FT                 TECLIDTGSPISFIKISKVPENVCKLPVLNLYHGLNKSYLETYGKILCYVM
FT                 KNLNKIHFHLVIVANKSMSHDVVLGRDFMEACNINLNLDTLKMVTVESIEN
FT                 PPNVSDIVEMLEKKSRLLVILLEMLEKKIRLLVILLVMKTR"
FT   CDS           1893..3869
FT                 /product="Gypsy-1_DTa-I_2p"
FT                 /translation="MIRNVSKVTDKEIVRNSNEIDLVARELFNINITDESP
FT                 DYKIGNEVNYNVRRHFIKMVESCYVNKQRPKEPEVRCEIKLRLEDSKPFSC
FT                 SPRRLAYTEKEKLQVILDEYLNEGIIRPSRSEYASPIVLVKKKTGDLRLCV
FT                 DYRKLNKTTVKDNYPLPLIDDLLDTLVNKTIFSKLDLKHGYFHVFVDKDSI
FT                 KYTSFMTPLGQFEFMRMPMGLKNAPAVFQRFINTIFADMIRDGKVVIYMDD
FT                 IMIASKEIQEHLNVLREVFDRLARNKLELRMDKCEFLQASVQYLGFLVTSK
FT                 GIQANDKGIEAVRDFPVPDKVHGVRSFLGLCSYFRRFIKNFSMIAKPLYDL
FT                 LKKDKEFAFEERELQCFEMLKKMLVEAPVLGLYYYKDEIELHTDASAQGFG
FT                 AVLLQRKEDKKLHPIFYFSKATTKDEAKYHSFELETLAIIYALRRFRIYVQ
FT                 GRRFRIVTDCNSLTLTLNRIELNPRIARWALELLEYDFELVHKSGKLMQHV
FT                 DALSRNTNILVVETNSFEDNLIICQAKDDKLKDVRKKLEKEEDKMFEMRNG
FT                 VIYRKSNDGKLLFCVPGEMEDKILYKYHNELGHLGRDKVMDAIVRTYWFPN
FT                 MKEKVVRHIDNCLRCVAYSPKSGKREGCCTAYQKEMCHSKLYISIITDRLI
FT                 MEDQRNICLW"
XX
SQ   Sequence 4775 BP; 1819 A; 584 C; 1113 G; 1258 T; 1 other;
     aaatcagaag tgggccgatc acgtgccaaa caaattaaaa actacaagtt taaaaactaa        60
     gaaagtgaaa caatttaata aaacaaaatg gatttgaaca aagtatcgat aaaacaatta       120
     aaaatatggt taagtgtatt aaaatgttca acgactggtt caaaacagga gttgatttta       180
     cgtttaaaca aattaccgag cgaaaaacgc aataagttta acgaaatgaa ggagaaccga       240
     gacggcgaaa gaagtaaagg agaagacgga ggcaaagaga aattccaaga acgagacggc       300
     gatagaagta actgcaaaga cggcggcatc gagaatttcg aggaagaaga cggcggcaaa       360
     agtaacaacg aagacggcgg taaagaggat tacgaagtag aagaaggcga cgaaattaat       420
     agcgaagatg gagaaggcaa gaacaaagtt ggcgaaaaga acgacaaagg cgaagacggt       480
     gaaaaagttc gggaatatat acgcgaagat ggagaaaacg aaagcgaagc tggcgaggaa       540
     acaagaggtg aaagaagcta cgaaagagac ggcgaacaga acaaaggtgg aggcagaaat       600
     cgaaactgtg cagaagtgaa catgcagaac caagctggag agaaagaaaa gatggagaac       660
     aattttaatc aaagtataga catttctttg agaatggcta cgcaagtgtt gtgtgagttt       720
     gcgggcgaat catgtgcgcg caaatggatc actcggatat ataatatcgc aagcatctac       780
     ggtataaccg gaaattatat aaaaatgttg atgattagca aaattaaagg caaagctaat       840
     gtttggttgc acgcaaatgc tgggcgtgtt ttgttaccat tggaggaatt gacggctgag       900
     ctgatcgcaa tgtttggcga aaaatcatca aagctggaga taaggcgcaa atttgagcat       960
     cgcaaatgga gtgcaggcga gacgttcggg agttatgttg acgacaagat aatgcttgct      1020
     cagggcatta atattgatgg agatgaaatg ttgagctgca tcatcgaagg tattacaaat      1080
     caagggctgc gcaatctggc gcacattcaa agctttgtgg atgttgggca cataaagcga      1140
     gcatttgcgg atgttagact gccgaaatct gttggaaaac cgatgacatc attggacttc      1200
     aaggacaaga aggagacacg atgtttcaat tgcaatgcca aagggcattg ggcgaacgag      1260
     tgcaggaagt caaaacggga gaaaggatcg tgctatgcgt gcggcgagat gggacatttt      1320
     gtggcgacgt gtttgaagag caaaaataag aacacaggca ataataatta tgtaagatac      1380
     gttgaaatca attttatgaa tgatattaat accaagttaa ctacagaatg tctcatagat      1440
     acagggagcc cgatttcatt tattaaaata tcaaaagtac cagaaaatgt ttgcaaatta      1500
     ccagttttaa atttatatca tggattaaat aagagttact tagaaaccta tggaaaaata      1560
     ttatgttacg ttatgaagaa cttaaataaa attcattttc atttagttat tgtggcaaac      1620
     aaatctatga gtcatgatgt agtccttgga agagatttta tggaagcatg taatattaat      1680
     ttaaacctcg acactttgaa aatggttacg gttgagagca ttgaaaaccc tccaaatgtt      1740
     agtgatattg tagaaatgtt agagaagaaa agcagattgt tagtgatatt gttagaaatg      1800
     ttagagaaga aaatcagatt gttagtgata ttgttagtca tgaaaaccag atagttagca      1860
     atgttagtga taaaattagc gacaataggc agatgattag aaatgttagt aaagttacag      1920
     ataaagaaat agttaggaat agcaatgaaa tagatctagt ggcaagggaa ttgtttaata      1980
     ttaatattac agatgaaagt ccagattaca aaattggcaa tgaagtgaat tataatgtta      2040
     ggcgtcattt tattaaaatg gtagaaagct gttatgtaaa taaacaaaga ccaaaggaac      2100
     ccgaagttag atgtgaaata aaattaagat tagaggattc taaacctttt agttgttcgc      2160
     ccagacgttt agcttataca gaaaaagaaa agttacaggt tatattagat gaatacttaa      2220
     acgagggaat tataagacca agtcgatcgg agtacgcatc tccaatagtg ttagtaaaaa      2280
     agaaaacagg cgacttacga ctatgtgtgg attatcgaaa acttaataag acgacggtta      2340
     aagataacta tcctttacct ttaattgacg atttgttaga cactttagta aataaaacaa      2400
     tattttcgaa attagattta aaacatggct actttcatgt atttgtggat aaggactcaa      2460
     taaaatatac ttcatttatg acgccattag gacaatttga atttatgcgg atgccaatgg      2520
     ggcttaaaaa cgctcctgcg gtgtttcaga gatttattaa tacaattttt gcagacatga      2580
     ttagggatgg taaggtagta atatatatgg acgatattat gatcgccagt aaagagatac      2640
     aggaacattt aaatgttctt agggaagttt ttgatcgttt agcaagaaac aaactagaat      2700
     tgagaatgga caaatgtgag tttttacaag caagtgtaca atatttagga tttttagtaa      2760
     ccagcaaagg aatacaagct aatgacaaag gaatagaagc tgttagagat ttccctgttc      2820
     cagataaagt acatggtgtt agaagctttt taggtttatg ttcgtatttt aggagattca      2880
     ttaagaattt ttcgatgatc gcaaagccat tatatgacct gttaaagaaa gataaagagt      2940
     ttgcgtttga agaaagggaa ctacaatgtt ttgagatgct taagaaaatg ttagttgaag      3000
     cgccagtgtt aggattatat tattacaaag acgagataga attgcataca gatgcaagcg      3060
     cacaaggttt tggagcggtc ttactacaaa ggaaagagga taaaaagttg caccctattt      3120
     tttatttttc aaaggccaca acaaaagacg aggcaaaata tcacagtttt gaacttgaaa      3180
     cgttagcgat aatttatgct ctacgaagat ttagaattta tgtgcagggt agacgattta      3240
     gaatagttac tgattgtaac tcactgacgt tgacattaaa taggattgag ttaaaccctc      3300
     gaattgcacg atgggcatta gaattgcttg agtatgactt tgagttagtt cataaatcgg      3360
     gaaagcttat gcaacacgta gacgcgttaa gtaggaatac gaatatactg gtagtagaaa      3420
     cgaatagttt tgaagacaat ttaattattt gtcaagcgaa agatgataag ttaaaagatg      3480
     ttagaaagaa gttagaaaaa gaggaagata aaatgtttga gatgaggaat ggagttattt      3540
     atagaaaatc aaatgatggg aaattgctat tctgtgtgcc aggagaaatg gaggacaaga      3600
     tattatacaa atatcacaat gaattaggtc atttaggacg agacaaggtt atggatgcta      3660
     ttgttaggac gtattggttt ccgaatatga aagaaaaagt tgttagacat attgataatt      3720
     gtttgagatg cgtggcatat tcgccaaagt caggaaaaag ggaaggatgt tgcacagcat      3780
     accaaaagga aatgtgccat tcgaaattat acatatcgat cattacggac cggttgataa      3840
     tggaagatca aagaaacatt tgtttgtggt gatagacggt tttactaaat atgttaggct      3900
     gtatgcaaca aagacgacga acacaaaaga agttatatag catgaaagat tattttggtc      3960
     gtacagcagg ccaacatgta tcgtttcgga cagaggaagc tgttttacat cggaagagtt      4020
     tggaaaattt gtgaagaata taatattaag cacgtaaaaa ttgcgactgg gtcacctcag      4080
     gccaatgggc aggtggaaag aattaatmga atatagggcc aatgatagct aaattagcag      4140
     atccgaaaaa ggactgcatt gggatacagt tgttgaggac gttgaatttt cattgaacaa      4200
     tacaaagcaa agaagcatcg cacaaatgcc gagtaaaatg ttgtttggaa tcgaacagaa      4260
     aggaaaagtt attgatgaat tgaggcaaaa gttagaagaa ttagataatg ttagtgatgt      4320
     tagagatgtt agagatttag acaaaattag gaaaaatgga gtggaatcgc aaatcaaatt      4380
     acaaaatgac aacgaaagaa gatataatga gaaaaggaaa gatagtttag agtacaaagt      4440
     tggagattat attatggtga aaaattttga taatgcagta ggagtcgcaa ggaagctaat      4500
     acccaaacac aagggtcctt atgtgataga taaagttttg agaaatgata ggtatgtaat      4560
     aaaagatgtg gaaggttttc aattgtcgcg ttgcccttat caaggagtct ggagtagtca      4620
     aaatattaag cattggattg gtaaacgaaa atagctgtaa atatatccaa agaattgtaa      4680
     atgtaaagac tgatagtatg taagataatt ttagatgaaa tcaattgtaa attaaaccaa      4740
     gatcagggga tcttgaaatg tcaggacggc cgaat                                 4775
//
ID   Gypsy-1_DTa-LTR repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   26-JUL-2011 (Rel. 17.08, Created)
DT   26-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DTa_;
KW   Gypsy-1_DTa-I; Gypsy-1_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-324
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1611-1611 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 324 BP; 94 A; 55 C; 66 G; 108 T; 1 other;
     tgtagcagga tggctacgta gtagtatgta tgtatgtata agttattgta ttccttctag        60
     aacattcctg aatattctta gagtacgttg ttgttgttgt agagcttact ctctctcttg       120
     cgatctcacc acactcactc tctcagagag tcgggggttg gtkcgagtcg tgagctgaga       180
     gcgaagttag ttgaatgcca gcagtgatcc tgaccagata aaacttgtga aataaaataa       240
     taataaaact ataaactatt ttgtgtaaac atatattcta ctgtgtggta tttcattaat       300
     agggacatat atcatacccc taca                                              324
//
ID   Gypsy-1_DVir-I repbase;    DNA;    INV; 6627 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DVir_;
KW   Gypsy-1_DVir-LTR; Gypsy-1_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6627
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1809-1809 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5720-6208] - Integrase core
CC   'CTGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1785..2945
FT                 /product="Gypsy-1_DVir-I_2p"
FT                 /translation="MDWSQIVEKIKRHRENFDKSYKCLNKSAPVLRPTIIK
FT                 HTEILVYEYNEIRSLVTECQNKLTSLHRVQTSDVLQRLRDNLVNLNKKYDL
FT                 QLYLPSVLNTPVTFDKSLLTNDQIEDTKLVNMAQTVVEFIKLATSLIPEFD
FT                 GKPENLQSFLDSLNLLETLKGTHELTAVSLIKTKLKGHARNLISNEQTIAA
FT                 IITQLSNAVKGESVEVVSAKLLNLQQKNKTANQYTQEVEKLTKALEGAYIS
FT                 EGLSQSLANKYSTTTAVKAMTQNCSIDKVKLIMQAGTFTNMNDAVSKFVNS
FT                 CTEITGQSNTVLYYRRGANNNNRGGRGYNRGRNYNHNNYNRGGNNNNNNYN
FT                 NRGGRRGQNRGRGRGNSNQGYNSNNVRMAQNTPENSQNPLGNNQ"
FT   CDS           4082..6376
FT                 /product="Gypsy-1_DVir-I_1p"
FT                 /translation="MSGFHQIELEENSRNITSFSTSNGSYRFTRLPFGLKI
FT                 APNSFQRMMTIAFSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTDVFNVCRK
FT                 YNLKLHPEKCSFFMHEVTFLGHKCTDKGVLPDDKKFDVIKNYPVPHDADSA
FT                 RRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWSSECQNAFQYLKEKL
FT                 MHPTLLQYPDFRKEFCIITDASKQACGAVLTQNRDGIQLPIAYASRSFTKG
FT                 ESNKSTTEQELAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSK
FT                 LTRMRLELEEYDFTVEYLKGKDNFVADALSRINIKELKDMQHKVLKVTTRR
FT                 QSRQNKNCTVENYELLPRQSHKNVSKPNVHEVITNDEVRKVVTLRITESKC
FT                 LFKHGNKIIARIEVSDLYTNGILDLGQFFQRLEKEAGILKISQLKVAPSEK
FT                 IFESVSIDSFKNMGNEILKSLRVALLQPVTQIKDEKEIQQILSTYHDDPIQ
FT                 GGHSGITRTLAKIKRHYYWKNMTRHIKEYVRRCQKCQMSKTKTHTKTPLTL
FT                 TETPVNAFDIVIVDTVGPLPKSENGNEYIVTLICDLTKYLVAIPIKSKSAN
FT                 NVAKAIFENFILKFGPMKTFISDMGTEYKNQILTDLCKYLKIKNLTSTAYH
FT                 HQTLGTIERSHRTFNEYIRSYISADKSDWDVWVQYFTYCFNTTPSATHEYC
FT                 PYELVFGRLPKQFIDLNKTNYIDPIYNLDDYSKEIKFRLEIAYKRARIMLE
FT                 KAKAYRKLAYDALN"
XX
SQ   Sequence 6627 BP; 2559 A; 1273 C; 1149 G; 1644 T; 2 other;
     tggcgaccgt gacaagtgtc acgaacatgt taaaaagtaa cttcatgatc aacgagaggc        60
     acgagcgtca tggtcacaac gcggtggctt aaaaaacaag gttaatacaa gaatagcgcg       120
     cctaaggtgg ctgctgtaca caaaacggcc aacacccgca tggtcgacag ctcagaagta       180
     aaaatgagct tgatatgtgc aaaatgaaat taggcagaga aaaccaaacc cactactgac       240
     tcaaatataa aagctctaat gaaccaaaca actaatgaag ttacacccat tgacgmaaac       300
     ggcctaccga aagaaaaacg aatgtgccca caggattgcg agggcccact cgacagcccc       360
     tctgcgaaca tacgtgcaga cactgcacac cagcgcctcc aaacattaga ttacaaccaa       420
     caagtggaca cctgtcgaag accggcgccg gcgccgccgc gcgaaagctg tgccatcgga       480
     ataagtgcga gaggcaaccg ccacttacgc atacgaggga acaccagcgt gccacatccg       540
     gcgacgccca gctgatgcaa cgatgaacaa cagtcgccgc tatatcccta acgagggaaa       600
     actaagcaac aaagaagagt ttgcaaaatt gagaggcaac ccgccgcccg attagctgcc       660
     tagcccgaga gtgcggaata ctaagcaact aagacgagtt gcatgagagg ctgaaaccgc       720
     cccttatgcc cgcgtgcaag aagaagaaga agaccctata acaatcagta ccggatccca       780
     gcgctaccaa catattaaat taaatagtaa taaataaaac ttaaaaattg taatgcccga       840
     cgacaattga gtcgaccggc aagacgtttg gcccgtacag ccattcgaaa caataggtag       900
     gaaaaataca gattgttttt aagatgcgtt ttaagcagaa aacaaacaag caaaacaaaa       960
     cccgacttgt aaacaataaa agcatcaaat tcaataaata tatgtaataa aacctcaaat      1020
     gaacgataca aacaacaact tgtcttgtaa aagtaaacga aaactgtatg atccaaacat      1080
     actatatatg aatattaata tcaaaaagag gaaattaaaa agttataatt cgttcagttg      1140
     gaatataaag aaataagtgc tccgcttgtc tcattaggta attcaaaatt atgatcaaga      1200
     attagcatga tcgaggacaa gattaacaaa gtatataacg actatacaga ctttcgtatg      1260
     cgagccatac aaattttgca aaggcataga gaattcatat cagtatatga gttcgaatcc      1320
     gaatatatag aaacattcgg cacagtgaca agtccactct attcatgttc taaaatagag      1380
     tgcggaataa tcttgtctac actaccctac gtcaaaataa aaacaattat tgacgagcat      1440
     ccgattctag ggcagacaac aattgtttta gtacgtctgc ataggtagta gtcaaatcaa      1500
     aaagcaagaa tatttatata ggaatatggg gggaaaacaa tcaaaggcag atgataacac      1560
     tgccaatgta gttaacgtag tagaagtcgt agacaccact ccccatgtgc agttaacaaa      1620
     catactgcta ataatactca ttgtaatagc ttcagtaaac atccttctga agatttatct      1680
     tcttcataaa aaatcactga ggaagcgtta catgagtcga gccaacgact tagacaaggt      1740
     ctaagccact gcttaaataa aatatttaag tagcggaagc ttacatggac tggtcccaaa      1800
     tagtagaaaa gataaagcgg catagggaaa atttcgataa atcatacaag tgccttaata      1860
     aaagcgcacc agttttaaga cccaccataa ttaaacatac tgagatcctt gtatatgagt      1920
     acaatgaaat caggagtcta gttaccgagt gtcaaaataa actgacaagt ttacacagag      1980
     tccaaacttc agacgtttta cagcgtctaa gggataatct ggtaaactta aataaaaagt      2040
     atgatctcca gctttatctw ccatcggtgt taaatacacc ggtaacattt gataagtcac      2100
     tactgacaaa cgaccaaata gaagatacaa aattagtaaa catggcacaa acagttgtag      2160
     aatttatcaa gctagccaca tctctgatac cagagtttga cggtaagccg gaaaatctac      2220
     aaagttttct agattctttg aatctattag aaaccttaaa aggcacacat gagctaacgg      2280
     ccgtaagcct tataaaaaca aagctaaaag gccatgcgag aaatttgata agtaatgagc      2340
     agacaattgc tgcaatcatt acgcaactat caaacgcagt aaaaggagaa tcggtagaag      2400
     ttgtatctgc taagcttctt aatttgcaac agaaaaataa aacggctaac caatacaccc      2460
     aagaggtgga aaaactgaca aaggcccttg aaggcgccta tatcagtgaa ggtctaagcc      2520
     aatcacttgc aaacaaatac agcactacaa cagctgtaaa agctatgacc caaaattgtt      2580
     cgattgataa ggtaaaactt atcatgcagg caggcacatt cacaaatatg aatgatgccg      2640
     tctccaaatt tgtcaatagc tgcacggaga taacaggtca aagtaacact gtcctgtatt      2700
     atcgacgagg tgcaaacaat aataatagag gaggccgagg ttataatcgt ggcagaaatt      2760
     acaaccacaa caattataac cgaggcggta acaacaataa caataattac aataaccgtg      2820
     gaggaagacg aggccaaaat agaggaagag gccgaggtaa ctccaaccaa ggttataata      2880
     gtaacaatgt gagaatggcg caaaatacgc cggaaaactc tcagaaccct ttaggaaaca      2940
     accagtaaat gtaaaggttc attccatcaa ttacagtctt aatatatttg tcacttttta      3000
     taatcattca actgaaaata aactcacatt cctaatagat actggtgcag atatctcact      3060
     tttaaaaata aattcagaca atttcaaaat tcaagaagaa aaaattataa acatccaagg      3120
     cataggccaa ggtgtaataa aatctcaagg aacaacttca atagaacttc aatccacaaa      3180
     atatattatt ccacacgaat ttcatttagt agattccgat ttttcaatac cgtgtgatgg      3240
     aataataggc attgatttta ttaaaaaatt caattgtcaa ttagatttca aaccaagtga      3300
     agactggttt ataattagac ctcaaaattt aaattatcca attcatgttc cgataacata      3360
     tagtgctggc aacaacgcag ttctcttgcc agccagatcc caagtaattc gaaaaataga      3420
     cattaataca gtaaatgatt atatatttgt tcctaatcaa gaaatacata atggaattta      3480
     tgttgcaaat acaatagcag catccaaaca tgtatacatt cgccttctaa acacaactaa      3540
     tttcgaccaa ttggtcaaag taaacaaaat ccaatatgaa aatttaacag attacgacat      3600
     tcatagcact aatccagaaa atagaagcga acaagtactt tcaaaattaa agaaaaattt      3660
     tccagaacaa ttcaaaagtc aactaacaga attatgcacc aagtatagtg atgtgttcgg      3720
     actggaaacc gaaccaatag cgacaaataa tttctataaa caaacattaa gacttaaaga      3780
     tgatgaaccc atttatatta aaaactacag aagcccgcat agccacgtta aagaaattca      3840
     aaaacaagta gggaaattaa taaacgacaa aatcgtagaa ccgtctgtat ccgagtataa      3900
     cagcccactc ttgttagttc cgaaaaaatc attaccaaat tcggaagaaa agaaatggcg      3960
     attagtaatt gactatcgcc aaatcaacaa aaaactactt tctgataaat tcccgctccc      4020
     cagaattgat gatattctag accaactggg cagagctaaa tacttttcat gccttgactt      4080
     aatgtcaggt ttccaccaaa ttgaacttga agaaaattca agaaatataa catctttttc      4140
     aacgagcaat ggctcatatc gcttcacgcg attaccattt ggtcttaaaa tagcaccaaa      4200
     ttcatttcag agaatgatga ctatagcatt ctcgggttta gaaccctccc aggcattcct      4260
     ttatatggat gacttaatgg tgataggatg ttccgaaaaa cacatgatta aaaacttaac      4320
     tgatgttttt aatgtatgta ggaaatataa cctaaagttg catccagaaa aatgttcatt      4380
     tttcatgcat gaagtgacat ttttaggtca caaatgcact gacaaaggag tattgccaga      4440
     tgacaagaag tttgacgtca tcaaaaatta tcctgtccct catgatgcgg acagcgcgag      4500
     acgatttgta gcattctgca attattatcg tcgatttata aaaaacttcg ccgattattc      4560
     acggcacata actagattat gtaaaaagaa tgttcctttt gaatggtcaa gtgaatgcca      4620
     aaacgcattc caatacctta aagaaaagct tatgcacccc acattattac aatatcctga      4680
     ttttcgcaaa gaattttgca ttataacaga tgccagtaaa caagcttgcg gagcagttct      4740
     aactcagaac cgtgacggaa ttcagctccc aatagcttat gcatctcgtt catttacaaa      4800
     aggggaaagc aataagagca caacagaaca agagttagcg gcaattcatt gggcaattac      4860
     ccattttaga ccatatattt atggcaaaca ttttactatt aaaacggatc acagaccatt      4920
     gacatatctt ttttctatga ctaatcccag ttctaaatta actcgcatgc ggctagagct      4980
     tgaagaatac gacttcacag tagaatacct aaaggggaaa gataatttcg tagcagacgc      5040
     actttcgcgt attaatataa aagaactcaa agatatgcaa cataaagtcc tgaaagtcac      5100
     taccaggcga caaagtagac aaaataaaaa ctgtacagta gaaaattatg aacttctgcc      5160
     aaggcaaagt cataaaaatg tatccaagcc caacgtacat gaagtcatta caaatgatga      5220
     agtacgaaaa gtagtgacct tgcgcataac agaatctaaa tgtttattta aacatggaaa      5280
     taaaattatc gcaagaattg aagttagcga tttatatacc aatggaattc tcgacctagg      5340
     tcagttcttc caaaggctcg aaaaagaggc cggtatatta aaaatcagcc aactcaaagt      5400
     ggcaccgagc gaaaagatct ttgaatcagt ttcaatagat tcttttaaaa atatgggcaa      5460
     tgaaatatta aaatctttaa gagtagcgct actccagccg gtgacccaaa taaaagatga      5520
     aaaagagata caacaaatat tgtctacata ccatgacgac ccaattcaag gaggtcatag      5580
     cggcataaca agaacgttag cgaaaataaa aagacactac tactggaaaa atatgacacg      5640
     tcatataaaa gagtacgtac gtagatgtca aaaatgccaa atgtctaaaa caaagacgca      5700
     cacaaaaact cctctgactc tcacagaaac acctgtgaat gctttcgata tagtgatagt      5760
     ggatacagtt ggtccgctac ccaaatcgga aaatggtaat gaatacatag tcacattaat      5820
     atgcgacctt acaaaatatt tagtagccat tccaataaaa agcaaaagcg caaataatgt      5880
     cgcaaaagct atattcgaaa atttcatact caagtttggt ccaatgaaga cgttcatctc      5940
     ggacatggga acagagtata aaaaccagat tttaactgat ttatgcaagt atttgaagat      6000
     caagaatctc acctctactg catatcatca tcaaacatta gggacaatag aacgaagtca      6060
     tcgaactttt aatgaataca ttcgttcata catctctgca gacaaatctg attgggatgt      6120
     ctgggttcaa tatttcactt attgcttcaa cacgacacca tcagcaacgc atgagtattg      6180
     tccatacgaa ctagtatttg gcagactacc gaaacagttc atagatttaa acaaaactaa      6240
     ttacatagat cctatttata atttagatga ctattctaag gaaataaagt ttagattaga      6300
     aatagcatac aaaagagcta gaattatgtt agaaaaagcc aaggcttata ggaaattagc      6360
     atatgacgct ttgaattaaa agtaggagat aaagtactta taagaaacga aacagggcac      6420
     aaattagacc cagtatattt aggaccatat atagtagaga aaatagaaga taatgacaac      6480
     atttttatta aagatagtat gacggcctga tcaaccgaat gtatttttat actccaacat      6540
     ttaaaatttc ttattatatc ctcaataatt aagttcattt aataactaca cattcataat      6600
     gttacgttat ttctctaaaa agggagg                                          6627
//
ID   Gypsy-1_DVir-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DVir_;
KW   Gypsy-1_DVir-I; Gypsy-1_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-424
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1810-1810 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 424 BP; 128 A; 97 C; 72 G; 125 T; 2 other;
     tgtagtgcgt atatgccctt acagaatacc ccgtacttaa atataaagta tgcagcactt        60
     tgttgcatac aataacaata atatggtaaa cgagcccaga gccacattat gtattggctc       120
     ggtctcatat tacgcagcgc ggttcactag cctcactagc tgaccgttta tgcttatgct       180
     gcatatccca cgctccgtct gagcgcattc cgtgagcaat atatatgctc actaatacag       240
     gcatatgcga gctactcact ctccctctct ttgtagctgt taacgaataa cagcataagt       300
     atatatgtat atccataggc taagcgaaca ttataamaas tgaataaatt cattctgaac       360
     aaagatacta aacagcactg acgtgctggc ctatttttca ttgacaataa gtgctctttt       420
     taca                                                                    424
//
ID   Gypsy-1_DWil-I repbase;    DNA;    INV; 6784 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   19-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DWil_;
KW   Gypsy-1_DWil-LTR; Gypsy-1_DWil-I.
XX
NM   Gypsy-1_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6784
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
RN   [2]
RP   1-6784
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1364
FT                 /product="Gypsy-1_DWil-I_1p"
FT                 /translation="MGKGWIYHMKKEDLLQTGQRIGIEMTGTVEEMRKQLG
FT                 EWVERNETDPDWKEEINRLETKYSKNLKMKTIASTSKTCENGVDKEADEFQ
FT                 KINIATLAIPPYLPPRWGSEGALDSAETKRDIRRQTIDPKKTATHTTNRTT
FT                 EYAKVAKQVREWTFRFDGNSRPLEFIEQIEWSADMYGIELDMIPRAMPELL
FT                 KDRALKWYVANNKQWRTWKEFVEGFKKYFLPRGFFNKLADQVKNRKQNRNE
FT                 YFKDYMIDMQTMMRPLKIPEYEQLEVILENCTPDLKIFVRPHRVRNLDELM
FT                 QLAEEHEMLEQERSDFHRPNNAQRTHNNQSSNRGENNYGPPVTQCRRCQDN
FT                 SMENNSRPSHENKNIQDGKVLNPNQACRRCGAAGHWARECNNQRLIFCWQC
FT                 GRIGKRTKECCWSSGNERRFQPIRGEQGPSQQAPHH"
FT   CDS           5059..6372
FT                 /product="Gypsy-1_DWil-I_3p"
FT                 /translation="MRGFLHAEILSKSHSKFNTQRVKPTKKKNPIRMNAFN
FT                 VNFGQDEGVVRRGAAPRANMERGDWHGSDEESDDDEPDMIDPAIAASSDEE
FT                 NDEDVDDSGYGSEESEAESAINQGHQEEENDEEIWRELDEAIRMMDDEEAR
FT                 DASSGRSSPEEYAPWEQNEIYEPPARLWEPARPPTPFRMVDSMSEASETAE
FT                 MAVADEGAADGVASPPPLEPEGTDWEAEGSTSENQQWMEWWSEQMRQQEEA
FT                 ERELLRWERAQQEEEQLKRARERLAMAMLHXQQQQRQLQHQQQQQMQLQQQ
FT                 QQQQMQLQQQQQQQLQQQQQQQQQQRQLQQQQQPQWRQQQQLQLEYRECPW
FT                 VWPRPALSRQMSAPTGHNDSARPILARQNSCPVPYGHERYEAVEERDWPEM
FT                 VADIVGQMVRQEGPRRVRIVWAGQNRYRIRIAQGVVRVYRERRT"
FT   CDS           1181..4453
FT                 /product="Gypsy-1_DWil-I_2p"
FT                 /translation="MPQMRSSRTLGKGVQQSETHFLLAVWKDWEENKRMLL
FT                 EFGKRKAVPAYQGRAGTQPTSSSPLIGQLIEEEDQLSAIIEVAGVQMKATI
FT                 DSGATSSFISKQMLETVRNKGKWENTHKQVYMADGKVRDIEEQWTGYVRFG
FT                 DKEIHMPFLVMPEGIDALILGWNFLRIMNTEISCGGHKVLIPTVKRIQGRL
FT                 VERISIMVTQNSDQQEIQNFLNQELKELGKVEGLSKVGIHRITMKDDIPIK
FT                 QRYYPKNPKIQGEINTKVDELLTMGCIEPSQSPYSSPIVMVRKKQTGKWRL
FT                 CVDFRQINAKSIKDAYPMPRIDYILNQLREAKFISSLDLKDGYWQIPLEEN
FT                 SRPMTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMIPNAFAYQ
FT                 DDIVVVSKTISEHMVHLQEVFSRLKEANLRINAEKCQFFRKELKFLGHLVT
FT                 ENGIATDPDKVAAIAQLKPPTCTKELRQYLGVASWYRRFVPNFAMITHPLN
FT                 ALLKKKTKWHWSEEHQAAFESVKGKLTSDPVLACPDFTKTFVLQTDASNTG
FT                 LGAILVQNTEEGERVVSYLSRELNQAEKNYSATEKECLAIVWAVRKLRPYL
FT                 EGYRFKVVTDHMALKWLNSIESPTGRIARWALELQQYDFEIAYRKGKLNIV
FT                 ADALSRQPMEGCRRIVDNGARLRQANKECEWIQEVINKVQQQPQKYPDYIV
FT                 ENSQVYRNIPHRAGQEEVISWKLCVPKTLRNQVMEENHTSITAGHTGSRRT
FT                 ISRTAARYYWPGMQRDIRKFVGKCTTCQQYKPNQQQAAGKMLTQIPDEPWA
FT                 TVCADFVGPLPRSKHGNSMLLVIIDRFSKWTELIPMRKATAENLIKAFRER
FT                 ILSRFGVPKVVITDNGVQFTSRTFKKMLEEWGCQHQFTAPYTPQENPTERA
FT                 NRTVKTMIAQFTGENQRNWDESWPEITLAVNTSQSESTGFTPAYVIQGREP
FT                 RMPGAIYDSVTTGTGKQSVPPEAKAKQVQELFELIRRNLETAAQDQARHYN
FT                 LRRREWRPTIGTTVWAKEHHLSNAAEGFAAKLAPRFGGPYEVTGFLSPVIC
FT                 KLRHKETGKTRQAHISQMKEQISEQTDVNKIDEQ"
XX
SQ   Sequence 6784 BP; 2576 A; 1361 C; 1714 G; 1131 T; 2 other;
     actggcgccc aacgtgctat actggtgaaa ttttaacaaa acaaaagttt gaaaattgta        60
     aagaaaacat caaaatgggg aaaggatgga tttaccacat gaagaaggag gatctgttac       120
     agacaggcca aaggattggg atcgagatga ccggcacagt ggaggaaatg aggaaacagc       180
     taggcgagtg ggtagaaagg aatgaaacgg acccagactg gaaggaggaa ataaatagat       240
     tggagacaaa atactcgaaa aatctgaaaa tgaaaacaat agcaagcaca tcaaaaacat       300
     gcgaaaatgg cgtagacaag gaggccgatg aattccagaa aataaacatc gccacactag       360
     caattcctcc atatttacca ccaagatggg gaagcgaagg agccctagac agcgcagaaa       420
     caaagaggga cataaggaga caaacaatag accccaagaa aacggcaaca catacaacaa       480
     acaggaccac cgaatacgcc aaagtggcaa aacaagtgag agagtggaca ttcagattcg       540
     atggcaattc cagaccgcta gagtttatag aacagatcga gtggtcagca gacatgtatg       600
     gcatcgagct ggacatgatc ccgagagcaa tgccagaact cttgaaagac agagcactca       660
     aatggtacgt cgcaaacaat aagcagtggc gaacatggaa ggaattcgtg gagggcttca       720
     agaaatactt cctgccaaga ggattcttca acaaattggc ggatcaagtg aaaaatcgca       780
     aacaaaacag aaacgagtat tttaaggact atatgatcga catgcaaaca atgatgagac       840
     ccctcaaaat accagagtac gaacaattgg aggttatatt agaaaattgc actccagatt       900
     tgaagatatt cgttcggccg cacagagtca gaaacctaga tgagctgatg caattggcgg       960
     aagaacatga gatgcttgaa caagaacgat cagatttcca tcgcccaaac aatgctcaaa      1020
     gaacacacaa caaccaatca agcaacagag gagaaaataa ttacgggcca ccagtcacac      1080
     agtgccgaag atgccaagac aacagcatgg agaacaattc aagaccaagc catgaaaata      1140
     aaaacatcca agatggaaaa gtattgaacc caaaccaggc atgccgcaga tgcggagcag      1200
     ccggacactg ggcaagggag tgcaacaatc agagactcat tttctgttgg cagtgtggaa      1260
     ggattgggaa gagaacaaaa gaatgttgtt ggagttcggg aaacgaaagg cggttccagc      1320
     ctatcagggg cgagcaggga cccagccaac aagctcctca ccactaatag gccaactaat      1380
     agaggaagag gatcaattgt cggcaatcat cgaagtagca ggagtccaga tgaaagcgac      1440
     aattgactcc ggagccacga gtagtttcat cagcaagcag atgttggaaa cagtgaggaa      1500
     taagggaaaa tgggagaaca cacacaaaca ggtatacatg gcagacggaa aggtgcgaga      1560
     cattgaagag caatggacag gatacgtgag atttggggac aaggaaatcc acatgccatt      1620
     cctggtcatg ccagaaggaa tagatgcgct gatactaggg tggaatttcc tccggattat      1680
     gaacacagag atatcgtgtg gaggccacaa agtgctaata ccgacagtca agcgaataca      1740
     gggcaggctg gtagaaagaa tatccatcat ggtcactcag aatagtgatc aacaagaaat      1800
     acaaaatttc ctaaatcagg agttgaagga attagggaaa gttgagggac tgtcaaaggt      1860
     ggggatacat cgcataacaa tgaaggatga tatcccaata aaacaaaggt actacccgaa      1920
     aaatccaaaa atacagggag aaatcaacac aaaggtcgat gaactgttga caatgggatg      1980
     catcgaacca tcacaaagcc cgtatagctc tcccatagtg atggtgagaa agaaacagac      2040
     gggcaaatgg agattatgcg tagattttag acagattaac gcaaaatcta taaaagatgc      2100
     atatccaatg ccacgcatcg attacatctt aaaccaacta cgtgaagcga aatttataag      2160
     cagcctagac ctgaaggacg gctattggca aattccactc gaagaaaaca gcaggccaat      2220
     gacagcattc acagtcccag ggaaaggttt attccaatgg aaagtgatgc cattcgggtt      2280
     acactctgca tcagcaacgt tccaacgggc actggaccaa gtcatcggcc cagaaatgat      2340
     accaaacgcg ttcgcctatc aagacgacat agtggtagta agcaaaacaa tctcagaaca      2400
     catggtccac ttgcaagaag tgttcagtag attgaaagaa gcaaacctca gaataaatgc      2460
     cgaaaaatgc caatttttca gaaaagagct aaagtttcta ggacacttgg taacagaaaa      2520
     cggtattgca acggacccag acaaggtggc agcaatagct caactgaagc cgcccacgtg      2580
     cacaaaagaa ttacggcaat atctaggggt ggcctcgtgg tacagacgat tcgtaccaaa      2640
     ttttgctatg ataacacatc cgttaaacgc gctgctcaag aaaaaaacca aatggcattg      2700
     gagcgaagag catcaagcag cattcgaatc agtaaaagga aaactcacga gtgacccagt      2760
     attggcatgc ccagacttca caaaaacgtt cgtactccag acagatgcaa gcaacacagg      2820
     attaggggcc atactagtac aaaacaccga ggagggggaa agagtggttt catatctgtc      2880
     aagagaatta aatcaagcag agaagaacta ttcggcaaca gaaaaggaat gcctagcaat      2940
     agtgtgggca gtacgcaagc tgaggccata tctcgaggga taccgattta aggtggtgac      3000
     agaccacatg gcgttgaagt ggttaaatag catagagagt cccacgggcc gcatagctcg      3060
     atgggcgctg gaattacaac aatatgattt cgaaatagca tatcgaaagg gcaaactaaa      3120
     cattgtcgcg gatgcactat caagacaacc gatggaaggg tgcagaagaa tagtagacaa      3180
     tggcgcccga ttacgacaag caaacaaaga atgtgagtgg attcaagaag taataaataa      3240
     agtacaacaa caaccacaga aatatccaga ttacatagta gaaaacagcc aggtgtacag      3300
     gaatattcca catagagcag gtcaagaaga agtaatatca tggaaattgt gtgtgcccaa      3360
     gacgctacga aaccaagtga tggaagaaaa ccacacttcc ataacggcag ggcatacagg      3420
     aagcaggcga acgatttcca gaactgcggc aagatattat tggccaggaa tgcaacgaga      3480
     tatcaggaaa ttcgtgggaa aatgcacaac gtgtcagcaa tacaaaccca accaacagca      3540
     agcagcaggg aaaatgctga cgcaaatacc tgatgaacca tgggccactg tttgtgctga      3600
     tttcgtcgga ccactaccac ggtcgaaaca tggaaactca atgttactgg taatcattga      3660
     ccgattttca aaatggacag aactaatacc catgcgaaag gcaaccgcgg agaatctaat      3720
     caaggccttt agggaaagaa ttctgtcgag atttggagtt cctaaagtgg taataactga      3780
     caatggggta caatttacta gcagaacatt taagaaaatg ctagaggaat ggggatgcca      3840
     acaccaattt acagcaccat acacaccaca agaaaaccca accgaaaggg caaacagaac      3900
     agtgaaaacg atgattgctc agtttaccgg tgaaaatcaa cggaattggg atgagagctg      3960
     gccggaaata acactggccg taaataccag tcaatcagag tcaactggat ttacgccagc      4020
     atatgtgata caaggacgcg aacctagaat gccaggcgca atatacgata gtgtcacgac      4080
     aggcacagga aaacaaagcg taccaccaga ggcaaaggca aaacaagtgc aagagctttt      4140
     cgagctgata agacgtaatc tggagacggc ggcacaggat caggcacgtc actataacct      4200
     aaggaggaga gagtggagac caacaattgg aaccacagta tgggcaaaag aacaccatct      4260
     ttcgaatgcg gccgaaggat ttgcagcaaa attggcacca agatttggag gcccttatga      4320
     agtgacagga tttttgtctc cagttatatg taaattacgg cacaaagaaa caggaaaaac      4380
     caggcaagca catatcagcc agatgaaaga gcaaataagt gaacagacag atgtcaataa      4440
     aatagatgaa caatgagtat ggacgaatct gatgacatgg cagcgagaaa tctgcacaga      4500
     ccggccggct gggcagaaat ctcaaaaaca tgacacagag ccaaaaatct caaagtgcat      4560
     caaaatcgta caaaatcacg taacaaaaaa aaaaacgtaa aacaaaagaa tcacaaagtg      4620
     cgtaaataag aacaagcaga acagcaaagt cacaaaccgc ataccggaac aagataaata      4680
     tatgcggaca tcatatacat acagccaggc aaatatgcat gagcaaatag aaaatagcaa      4740
     aaaaaaaaaa acaaggataa acaaaaaaaa aaaacgatca cacaatcaaa gagagccaaa      4800
     acctacacat gcgcacgata gtacacatgt aatagtatga gtgcacaaag agaaaacaaa      4860
     aggaaagaga ggggaacaca catacacatg cgcataagag tgagcatgta atcgtgcatc      4920
     gcgacataca cacacatgcg cgcgttaata cattagtatt agtggagcat tgcaggggca      4980
     ttagaatatt cggcatcgat agttaaaata gagaatccaa agttttgaat aacggtaaaa      5040
     atttgacaaa tatcaaagat gcgaggtttc ctgcatgcag aaatcctaag caagagtcac      5100
     tcaaagttta acactcagcg agtaaagcca acaaaaaaaa aaaacccaat tagaatgaat      5160
     gcgtttaacg taaattttgg ccaggatgaa ggcgtagttc gacgaggtgc ggcaccgcgg      5220
     gccaatatgg aacgcggtga ctggcacggg tccgatgagg agtccgacga cgatgagccg      5280
     gatatgatag atccggcaat cgccgcctca tcggacgagg agaacgatga ggacgtagat      5340
     gacagcggct acggatctga ggagagcgaa gccgagtcgg cgataaacca gggccaccag      5400
     gaggaggaga atgatgagga aatatggagg gagctagacg aggcgatacg catgatggac      5460
     gacgaagagg cgagagatgc gagcagcggc cggagtagcc cagaagagta tgcgccgtgg      5520
     gagcaaaatg agatctatga gcctccggca agattgtggg agccagcgcg gccaccaacg      5580
     ccgtttcgta tggtggactc aatgtcagag gccagcgaaa cggcggagat ggccgtggct      5640
     gatgaaggtg cggctgatgg agtagccagc ccacctccac tcgagccaga ggggacggat      5700
     tgggaggcag aaggatcgac gtcggagaac cagcagtgga tggaatggtg gtcggagcag      5760
     atgaggcagc aggaagaggc ggagcgagag ctgctgaggt gggaaagggc ccaacaggag      5820
     gaggagcagc tgaaacgggc aagagaacgg ctggcgatgg caatgttgca cawacaacag      5880
     caacaaaggc aactgcaaca tcagcagcag caacaaatgc aactgcaaca gcaacagcag      5940
     caacaaatgc aactgcaaca acaacagcag caacaattgc agcaacagca acagcaacag      6000
     cagcaacaaa ggcaactgca acaacaacag cagccacaat ggcgccagca acagcagctg      6060
     cagctcgaat accgagagtg cccgtgggtg tggccaagac cggcattgag tagacaaatg      6120
     tctgcaccca cggggcacaa tgacagtgct cggcccatat tggccaggca aaactcatgc      6180
     ccagtgccat acgggcatga gagatatgag gcggtggagg agagagattg gccggagatg      6240
     gtggcggata tcgtgggcca aatggtgcga caggaagggc cgaggagagt tagaatagta      6300
     tgggcgggac aaaataggta taggattagg atagctcagg gggtagttcg agtatataga      6360
     gaaaggagaa cataataagt agaataagta ggcgtaatga gaatataata agtaggatat      6420
     ttaaatgtaa gttaggtata agaaaagatg cggaacgggc caaaaatgaa aaaaaaaaca      6480
     acaatgaaaa gatgccctaa tccgccagca tttaacgaaa agatactcag taatcgccaa      6540
     cattagaaga tgccaaatgg ccaataaaag atgcgagctg agtccaaaag aaaaaaaamc      6600
     cccaaaaaca agcaaaacac atgcaaaata aaaaaaaaaa aaactacaaa ggcaaaacat      6660
     aaaaatgcac aagtacgaaa atgaaaaata cacacgcaga aaacaaacac aacaaacaca      6720
     tgcagaaaac aaacaaggta caagggacag gggagggcaa atccctcccg aagaaggggg      6780
     ggag                                                                   6784
//
ID   Gypsy-1_DWil-LTR repbase;    DNA;    INV; 2207 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_DWil_;
KW   Gypsy-1_DWil-LTR; Gypsy-1_DWil-I.
XX
NM   Gypsy-1_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
RN   [2]
RP   1-2207
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 98% identical to the consensus.
XX
SQ   Sequence 2207 BP; 781 A; 443 C; 576 G; 407 T; 0 other;
     tgtgaggaac attatataca caagaataat gtcccacaca acaaacaagc tacaacaaac        60
     aagatacaaa gccacaatac ataagataca acaaacagcc agatacaaac gcagccaaga       120
     cacaaactaa agtataagag tgaaatcgga tgtaaatgat caaataaaca aggccagccg       180
     aacattgccg atcgaacccc acgcaaccgc tggcgatttt cgtacaagcg ggaagatgcg       240
     tgggagacat aatgcgataa gttcggtcgt ataagagcca atgcaagagg ccggtcgaac       300
     atggccgatc ggaccccacg caaccgctgg cgatttcgta caagcgggaa gatgcgtggg       360
     aaacataata cgataagttc ggtcgtataa gagccaatga aagaggccgg tcgaacatgg       420
     ccgatcgaac cccacgcaac cgctggcgat ttcgtacaag cgggaagatg cgtgggaaac       480
     ataatgagta ttagtggctg tataagagta aatgaaaccg ggcttgaggg cataattgca       540
     tgcaaaaata gggcattggc ctcattagat aaattaagag catggagagg caaatgtaaa       600
     tgcatgcatt agcgtacata cacgcacgtc acacgtacac tatgcgtgag tgacggcatg       660
     ggagaatacc ggtggccaat gggccgcgcg atgcctacgt cacgctcatg agagcgaaag       720
     cagttagaat gcgagcgcca aaagaatttc gggagcgaga gaaaacaaaa gtgagggcca       780
     agcaagcccg aaagacgggt gcggggggcg cttggtaccg aaacgaaacc aagtgagggc       840
     tatgcttgtg aatcggggag taggggggaa agcaaagatg cgagaagcaa tgatggttta       900
     tggaggtgtg aggggaatat gcaagccgaa gggggaggga tgaggccatg gggaagccct       960
     ctatctgatg gatgcgagat gcatatgaaa gtgtatttgc atggggattt aaataataca      1020
     atatattaaa ttaatcaggc tatttatgtt caaatgataa ttttagttaa tacaattagt      1080
     atatatgtat gtaaatatca atattgagca aatatgggtg aaattgggta tgacgagtga      1140
     atcaaaggga gcgacgggcg acggcagcgc tggcagagaa agcagagaga gtcaacggga      1200
     tatgaagggc ggccaataga aaggcgacgc caatgcgtga aagtgatgga agcacgtaga      1260
     tacaagggag ctagacaagg acaaggaaat aaatgggcgc tcagccacaa agaaagtgga      1320
     catatgcgca aaggatttac gggactttca ccacgcatag caacaagtgg atgcgtgggt      1380
     gaaagcagag ggccgatgga aatgtaccag ctgtatagcg gtactacacc aagatattcc      1440
     tgaggccgtg ggaattgcct atataaaggc aacgcccatc aagcagcatc atcaagtcat      1500
     caagacgtga tcaagcaaca agtaattaag gccttacgag taaccttaag aaacttagca      1560
     aggaaacaca aggagcagca gaaaactaag aactatacag gccttacgag taacctgtac      1620
     agttccactt gatagcaaca agtccttaaa taaggataat aaacaccgta cccaagctag      1680
     agtaaatttg agagaagcca agcaatctcc aggagtaccc aaggtcagtg gaaggcacga      1740
     ggatatatcc tactgccgaa attccaggat ctatatatcc tgacgagtac caatttctga      1800
     ggaacatcct gcttcgtgat aacagctacg ggattcatcc cagagcctta aagcaaaagc      1860
     attctcaacg aactcagcga aaagggtgca gaggtgtgta gcgcaaatca agcacactat      1920
     acggatcgag acagtaacca gcaacggcta taggagcaag aggaagacga gaagggtcga      1980
     cgagggattc gaagtgactc accaacgctg cccaagccca gaactaccat cgagaaaccg      2040
     tcatatccaa ccgagcccac caacgatttg aataaacata caattaagca ttaacaactg      2100
     aaatcaaacg tgttttaatt tcaccggggc acaaaataaa tttgttgtgc cgaacctagc      2160
     ccaagagata tcgtaaatat cccgaaggac aaaaaaggat cgttaca                    2207
//
ID   Gypsy-1_FoCa-I repbase;    DNA;    INV; 7204 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_FoCa-LTR; Gypsy-1_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-7204
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2566-2566 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           202..2271
FT                 /product="Gypsy-1_FoCa-I_1p"
FT                 /note="gag."
FT                 /translation="MGMLTQLFGFVDMTGLTNLKGNVTSEATAPLVSSSWW
FT                 YGGFLFMMEVFGIAAVLLLLGVLVNSLVTKYILPHLPCWMIPRFESVNADR
FT                 RRKKVGNQLNVLNRDIEIIFAAQNKNHDQFVRIRRIFDSLTSEIAQIFILT
FT                 SNHQNSQLGEQTDALWRRVNSLEVRVKQLLLEFDIRCENRHEAVGQLVSQQ
FT                 AALHNSPSPDPILTGLIGYDYPYPQQSNIPFQEYVDEKIRHLGEQIGRYRN
FT                 HLASCIKSNYAIVEKEMGNFQNHMKSSFEDEVTWIHEQLTRMQTTIDKQDQ
FT                 TIQAQSSIINEFIHANSRVQAPSKEMIPTLPNQDDPSSCVELLGVPPPPQF
FT                 LSCPPPPQFLSHSPPQVNNPPNENKEDAIPAWCISRPRIMERKEEEIPINP
FT                 TDAIMQTRSSSSGPVLFHSVGNIPPPKFNPNIDSAENFIMELENHMERKRF
FT                 LRKDWILSLPAVFNQDPNQSLWWQRTKLFARTWDDFKKHFITMYASDSDLH
FT                 AALEKLLLRRQNDNEPFQKFAFEMDLQYRKVNRMTTNNKEAEIVTFIAERA
FT                 LPYLKANLLASRAATVVDLINYASKIERPVQEKSHNGNKYKSWQKGEKKVE
FT                 SHQTNSANSGKKSPPPSNRQQQQQPQQQQQQVAPFRQQGRPKVCTFCPHLS
FT                 NHTTQNCRRRQQPQVNCGQGSDQHSQRQQSSQDATGNGRRE"
FT   CDS           2214..5819
FT                 /product="Gypsy-1_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="STLSASTIVTRCDGKREEGVTIHGFVVTHPLIQDPNR
FT                 LIPILPITFPSCKLNALADTGSTISIVTLKSLRKVLGKGFSVNKWVEGPVI
FT                 MLDGTESLPTGMVTLKFNLNDREYTHTFAVMNSSNEMLLGMDFLHNCGLVL
FT                 DIGSLEWGFSDSFPSQKSPLTVSKVHVSNCNLQLVSEFESDQLKELIKKFP
FT                 DVVDAPLGRIKGVKHTIKMMEEHPKRQRPYPTAPHKHAEINRQVDEMLKLG
FT                 VIRPSDSPYASPVLLKEKTDGTWRFCVDLRHINRYTENDSFPIPRVHDLLR
FT                 KLANAKYISTMDAEKGYWQIPMDRKSRKYTSFCTQRGLFEFNMMCFGLKNA
FT                 AASYQRMMNELLAGLDEFVLIYQDDVLVFSENFSDHKRHLETVLERFRKAG
FT                 LTLKKSKCHFGKNRATFLGHIVSSKGIEMDPEKVRAIQNFEFPSTRKLLKT
FT                 FLGMIQWYHGFIDHMAILAEPLYKLTSNKSAYHETPAAKRAFHALKAAFLK
FT                 EVVLAHPITGKPFILRTDASNIGVGAYISQLDEYGEEKVISFASKTFSPAE
FT                 RNYSTAEQECYGILFGLEKFREYLDGHEFILQTDNQALTYLESMKNTNARL
FT                 MRWSWKLQEWSPYIQHIKGRDNCVADFLSRNPGTDSTEVDKDEEYMYPPIQ
FT                 ACSLXLACKLTREVIQRHQKRCPEEMTAHYSSPDFETINGVVYYTKTPTIV
FT                 PVIPSSLVPEVLATFHDAVYSGHLGVDKTMDRVKKSAFFRNMRQQIVDYIA
FT                 TCDICQRVKFDNRKPPGLMQSSPVEKPWATLYMDLMGPYIKSSPGGFTHLL
FT                 VIIDGFSKWVELFPLRSTSAAVIGKILEEQVFCRFGMPETIVSDNGTNFTS
FT                 TILKFLCNQWKVTQKFTSIYHPQSNLTERANRTVKTMIRAYLDDQAHNKWS
FT                 KQIPFLQLAINTSTQESTGFTPASILLNNDPKLPFDINVGLTDSELKVLKK
FT                 SIPKSFQEIIFDRHNQYLKILSLVTQNLTRAKEKQKKYYDQRHRDDHFQVG
FT                 DHVVIRDTTLSDKDKGITAGLCPLFRPGVGVISKIVGELTYEVTFPDGVVK
FT                 SPLHIQFLRRYHPRQPQTSPQLTQPSQITSTPTQQSNVDASSSCPDKDTLD
FT                 TINNNDDAVYGDDVPINNANLPKNSRSNRRHSIPKLSPIRTNESHQPDNQE
FT                 VISREMPILSPISNFQNVVNPRNSSQSPPPPPRRSRRLLKRST"
XX
SQ   Sequence 7204 BP; 2259 A; 1502 C; 1429 G; 2000 T; 14 other;
     aattggtgct tcgaaaccct tagtgataaa aagtgcaata gtaaacttgg aaatccttcg        60
     cgataaaaag tgcgaagggc ataaacagtg agtttggaga agttggtgaa cagttttgag       120
     tcgttggcag tggaaagtgt gttttacgta ttaaattaca tattccttca cttcctgcat       180
     ggtgcaacsa catccgacat catgggaatg ctgactcaac tcttcggctt cgtcgacatg       240
     accggactca ccaacctcaa gggaaacgtg acctcagagg caacagcgcc cctcgtatcg       300
     tcatcatggt ggtatggggg atttctcttc atgatggaag tgtttggaat cgctgcggtc       360
     ctcctcttgc tcggtgtcct ggtgaacagt ctggtaacaa agtatatttt gcctcactta       420
     ccttgttgga tgattccacg ttttgaatct gtgaatgcgg atcgtcgtcg taaaaaagta       480
     ggtaaccagt taaacgttct gaatagggat atcgagatca tttttgccgc ccagaacaaa       540
     aatcatgatc aatttgtaag aattagacgc atttttgatt cgttaacctc tgaaattgct       600
     caaattttca ttctaacgag taatcatcaa aattcccaac ttggtgagca aaccgatgca       660
     ttgtggcgtc gggtgaatag cctagaagtt agggtcaagc aacttttgtt ggaatttgat       720
     attcgttgtg agaataggca cgaagcagta ggacaattgg tatcgcaaca ggcagctttg       780
     cataattctc cctctcctga tcctatcctt accggcctta ttggttatga ctacccgtac       840
     cctcaacagt caaatatacc cttccaggaa tatgtagatg agaagattag gcacctcggt       900
     gaacaaatag gamggtacag gaaccattta gcatcttgca taaaaagcaa ttatgctatt       960
     gtggaaaagg aaatgggaaa cttccagaac cacatgaagt catcatttga agacgaggtc      1020
     acttggattc atgaacaatt gacgaggatg caaactacca tagataagca agaccaaact      1080
     attcaagctc agtccagcat catcaatgag ttcatccatg caaattcaag ggttcaagct      1140
     ccttccaagg agatgatacc cacgctacca aatcaagatg acccctcatc ctgcgtggaa      1200
     cttcttggcg tccctccacc accacaattc ttgtcatgtc ctccaccacc gcaattcttg      1260
     tcgcattctc ctccacaagt caataaccct ccaaatgaga acaaagaaga tgccattcca      1320
     gcgtggtgca tttctcgccc cagaatcatg gagcggaaag aggaagaaat ccctataaat      1380
     cctaccgatg caatcatgca aactcgttct tcatcgtcag gacctgtact atttcattcg      1440
     gtaggcaata ttcctccacc aaaatttaac ccgaacattg attcagctga aaatttcatc      1500
     atggaattgg agaatcatat ggaacggaag cgctttcttc ggaaagattg gatcctatca      1560
     ctgcctgcag tcttcaatca agaccccaat caatcattat ggtggcaacg aacaaagctt      1620
     ttcgctcgta catgggacga ttttaaaaaa catttcatca ccatgtatgc atcggattct      1680
     gatcttcatg ctgcactaga gaagttactt ttacgtcggc agaatgacaa cgaaccgttc      1740
     cagaagttcg ccttcgagat ggacctccag taccggaaag tgaaccggat gacaacgaac      1800
     aacaaagaag cagaaattgt caccttcatt gcagaaagag ctctcccgta cttgaaagca      1860
     aatctcctcg cgagtcgtgc tgcaacagtt gtggacctca tcaactatgc gtcaaaaatt      1920
     gagcgtcctg tgcaagagaa gtcccacaac ggtaacaagt acaaatcctg gcaaaaaggt      1980
     gagaagaaag tggaatctca tcaaacaaat tctgcaaatt ctggaaagaa gtctccacca      2040
     ccctcaaata gacaacaaca acaacaacca caacagcaac aacaacaagt ggcacctttc      2100
     cggcaacaag gtcgaccgaa agtgtgtaca ttttgtcccc atttaagcaa ccataccacc      2160
     cagaattgtc gtcgtcgtca acaacctcaa gtgaattgtg gtcaagggag tgatcaacac      2220
     tctcagcgtc aacaatcgtc acaagatgcg acgggaaacg ggaggaggga gtaaccatcc      2280
     acggatttgt ggttactcat cctctaattc aagatccmaa tcgactaatt cctatccttc      2340
     ctattacttt cccctcctgt aaattaaatg ccttagcgga tactggttct acgatttcaa      2400
     ttgtaacttt aaaatcgctt aggaaagtat tagggaaagg attttctgta aataaatggg      2460
     tagaaggacc agttatcatg ctagatggta ctgagtctct tcctactggt atggttacct      2520
     taaaatttaa tttaaatgat cgtgaataca ctcacacatt cgctgtcatg aatagttcga      2580
     atgaaatgct cttgggtatg gactttcttc ataattgtgg gttagtgttg gacatagggt      2640
     cactggaatg gggtttttca gactcctttc caagtcaaaa gtccccactc acagttagta      2700
     aagttcacgt mtccaattgc aatttacaat tagtgagcga attcgaatcc gaccaactga      2760
     aggagcttat caaaaagttt cccgacgtag tcgatgcccc attagggaga ataaaaggtg      2820
     tcaaacacac aataaaaatg atggaggagc atccaaagag acagcgtccg tatccaacgg      2880
     caccccacaa acacgcagag atcaaccggc aagttgacga aatgctaaag ttgggggtga      2940
     tccgtccatc agattcccca tacgcaagtc ctgttctttt gaaagagaaa acggatggga      3000
     cttggmgatt ttgtgttgat ttgagacaca tcaatagata taccgagaat gacagttttc      3060
     ccattccwcg cgttcatgac cttctccgta agttggccaa cgcaaagtat atcagtacaa      3120
     tggatgcaga gaaagggtac tggcagatcc ctatggatcg taagagccgc aagtacacct      3180
     cattctgtac ccaaaggggc ctttttgagt ttaacatgat gtgcttcgga ctcaagaatg      3240
     ctgcggcgtc ctatcagagg atgatgaacg agcttcttgc gggtctcgat gaatttgtgt      3300
     taatttatca agatgatgtc ctcgtattta gtgaaaactt tagtgatcac aaaaggcatc      3360
     tcgagaccgt cctagaacgg tttcgaaaag ctggcctgac acttaaaaaa tcaaaatgcc      3420
     attttgggaa gaatcgcgca accttcctag gtcacattgt gtcctccaaa ggcatagaaa      3480
     tggacccaga aaaagtaagg gccattcaaa attttgaatt tccatcaacm agaaagcttt      3540
     taaagacttt tcttgggatg atccaatggt atcatggatt tattgaccat atggccattt      3600
     tagcggaacc actttataag ttgacctcaa ataaaagtgc ttatcatgaa acacccgccg      3660
     caaaacgggc ttttcatgca cttaaagccg cattcctaaa agaagtagta ttagcccacc      3720
     cgatcactgg aaagcctttc attttgagaa cagacgccag taatatcgga gtaggagcgt      3780
     acatctctca attagacgaa tatggggagg agaaagtgat tagttttgcc agtaaaactt      3840
     tctccccagc ggaacgtaat tactcaacag cagagcaaga gtgttacggt attctcttcg      3900
     gtctggagaa atttcgtgag taccttgatg gtcacgaatt tattctccag acggacaacc      3960
     aagccctcac atacctcgaa agtatgaaaa atactaacgc caggttgatg agatggtctt      4020
     ggaagttgca agaatggtcc ccatatattc aacatataaa aggtcgtgat aactgtgtcg      4080
     cagatttttt atcacgtaat ccaggtacag attccacaga agttgacaaa gatgaggagt      4140
     acatgtaccc accaattcag gcatgttccc tcmagctggc gtgcaaactg acccgtgaag      4200
     tcatccagcg ccaccaaaaa cgatgtccag aggagatgac tgcacattac tcatcccctg      4260
     actttgagac gatcaatggg gtggtctatt ataccaaaac tcccaccatc gttccggtca      4320
     ttccatcttc tctggtacct gaggtcctcg ccactttcca tgacgctgtc tacagtggtc      4380
     acttgggcgt tgacaaaaca atggacagag tcaagaagag cgcatttttc cgcaacatgc      4440
     gtcaacagat tgtggactac atcgccacct gtgacatctg tcagcgcgtg aaattcgaca      4500
     atcggaaacc tcctggtttg atgcaatcgt cgccagtcga aaaaccgtgg gcgaccctgt      4560
     atatggatct catgggcccc tacatcaagt cttctcctgg aggatttacc catcttttag      4620
     tcatcattga tgggttcagt aagtgggtgg aattgtttcc tctgcgaagc acttccgccg      4680
     cggtaattgg taaaatattg gaagaacagg tattttgtag atttggtatg ccagagacga      4740
     ttgtgagtga caatggtacc aattttacgt ctacaatttt aaaatttttg tgtaatcaat      4800
     ggaaggttac ccaaaaattt accagtattt atcacccaca atccaatctg acagaaagag      4860
     ccaatcgaac agttaaaact atgattagag cttatcttga tgaccaggct cataataaat      4920
     ggtcaaaaca gattcctttt ctacaattag ccattaacac gtcaactcaa gagtctacag      4980
     gttttactcc tgcctcaatt cttttgaata atgacccaaa attacctttc gatattaatg      5040
     tcggcctcac tgactctgaa ctaaaagttt taaagaaatc aattccaaaa tcatttcaag      5100
     aaattatatt tgacaggcat aatcagtatc ttaaaattct ctctcttgtc actcagaacc      5160
     tgacccgagc caaagagaaa caaaagaagt actatgacca acgccataga gatgaccatt      5220
     tccaagtggg agaccatgta gtcatccgag acaccactct ctctgacaag gacaaaggga      5280
     taacggctgg cctwtgccct ctctttcgtc caggagtggg agtcatctct aaaattgtcg      5340
     gcgagctgac gtatgaagtc acatttcctg atggcgtcgt taaatctcca ctccatatcc      5400
     agttcttacg acgataccat ccgcgtcagc ctcagacatc gccacaattg acacaaccat      5460
     cacaaattac gtcgacccca actcaacaat ccaatgtcga cgcatcatct tcttgtccag      5520
     ataaggatac tcttgataca attaataata atgatgatgc tgtatatggt gatgatgtac      5580
     caattaataa tgctaattta cctaaaaata gtcgtagtaa tcgtagacat agtattccta      5640
     aattaagtcc aattagaacc aatgagtcac atcaacctga taatcaagaa gtaatttctc      5700
     gagaaatgcc aattcttagt ccaatttcaa attttcaaaa tgtagtaaac cctagaaata      5760
     gttcacaatc tcctccacca cctccaagac gtagtcgtag gctacttaaa agatcgacat      5820
     aataatatag ccggtggtca caagcgtcct cggtaatgag tgkwattctt aggatgtttg      5880
     atggtgaatt tctctcatct tcgaaagaat gaagttcggt ggcgtcttga ggggtgatga      5940
     gcccttcaag gtcaaagcta acgtagttct aattgtggta ttaactagtg gccacgcaat      6000
     agggtgcgtc ttggcgacgt gacgaactag ccaaggtcaa atccagagaa attgcacaaa      6060
     aaatgagtag atttcacatc gtgcagtcct ctgagtccct caacaatctt cgtaagtcgc      6120
     aaaaatcttg gttggttgga tttgttgaac atgtttacag tgatttttcc atttaatata      6180
     agctttgagt aagagtaact tgattaacat ggtgtgatgg tgactcgtag atttcaaaaa      6240
     attgtttctc aataattgtt cgggaaaaat tsttcaaatt tacacaagta atagataata      6300
     agttagtacm ctaggaataa aaataaattt ggaaaaggcc ccattagatt tttcgaaatt      6360
     ttgaaagttc ccattttcca atgtaaaact caggaatttt gggggaaaat ttttcggaaa      6420
     tataagttac gaaaattata tatgatagat gtttagttgt atgataatat ttaaccataa      6480
     aaatacaaaa ggctccaata gttttagaga taaaaattcc taaaattttg attttgtatc      6540
     caatacatta catatatata catatgtata catggtacag ctttgtaaaa ggttataaaa      6600
     tggtggttat cgatcttggg ttaagccaat aagtatgaat tctagctata attaatcata      6660
     ggataatata gtagtcttac aatttcgtat ggcaaggttc aattgtaggg aaattttgaa      6720
     atttccattt ttccaatgtt aaaattcagg aattttggaa caaaaatttt cattggaact      6780
     ttctgaaaaa tttatttagg ataagtctac agtcgtacat taatatttag cagaaaaaaa      6840
     caatcggtca aggttagttc tctagataaa aattcatgaa attttggttt ttgtactact      6900
     tcaatacata tatatgtaac acacagtagt catcatgacg tcacactgtt agtatacata      6960
     gtacatgtta caagtaggat aaatagtact ttagtgatat cagattccag gatataaaat      7020
     ttggtgtcat agtttttaca cataatatta agaagtacaa aattaagtag gttatcaaaa      7080
     ataattttta ttaatatatc tagmtataag attagttagt ttaactttgg ccctgcgccc      7140
     aactctcttt acgttacttc atggtggaca ggttccattg ttacgtaacg ttcggggagg      7200
     ggag                                                                   7204
//
ID   Gypsy-1_FoCa-LTR repbase;    DNA;    INV; 652 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-652
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2576-2576 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 652 BP; 223 A; 94 C; 146 G; 187 T; 2 other;
     tgcaaccttt ggaacgctga tgcaaatgtg acatcagcat ttcaaaggtc aagggattca        60
     aaatacatag atgtagtttt catatgtatc tcgcctctca tgtgtgtcca aaccatattg       120
     tgtgcaggag gagatcatga aggggaagag aggataggaa tgaggagcac agaatgatgc       180
     ctacgtcatc atgatcatca tgatcatgag ggcgtagttt gtgcatatgt agcgtaagta       240
     aaggtagtga tcaagtaggc gtggcttatg tgatcacgta tatatagagt aagcagagag       300
     aagagaagga aagtgtagtt ttagattcag gatcagcagg tttagtttta gtgatcatca       360
     agatcaagtt caaggtttaa akcttcggaa acttaataat aagttcctgt ctagataatt       420
     agttaaaatt taaataatag cattagctct cccacgtatt tataatacga gcatttctgt       480
     aaagtcaata tttttcagtc ggtattgatg taaataaatt tawtcataat tcttataaaa       540
     aagtgagttt ctactacaaa tttattgcac aacgtcacaa agaaaagggg catccgcgaa       600
     agtggatgtg aatcaggaca cgcaatccca taatagaata gggagcgtta ca               652
//
ID   Gypsy-1_HAS-I repbase;    DNA;    INV; 11420 BP.
XX
AC   AEAC01014456;
XX
DT   20-JAN-2011 (Rel. 16.02, Created)
DT   20-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Harpegnathos saltator genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HS_;
KW   Gypsy-1_HAS-LTR; Gypsy-1_HAS-I.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RP   1-11420
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Harpegnathos saltator genome.";
RL   Direct Submission to Repbase Update (02-FEB-2011).
XX
DR   Genome; AEAC01014456; Positions   11611     192.
XX
CC   Positions [6430-6975] - Reverse transcriptase
CC   Positions [8146-8634] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           9483..11042
FT                 /product="Gypsy-1_HAS-I_3p"
FT                 /translation="MTTSYKDLQRQYNELRRKQEETRQRRKELEKYKQQRL
FT                 QEKIDLIRQSIAKDEEAIQQLEASSSSEETEKTQTIEPPCGETPTKIQKYK
FT                 SHIQPRQIAPRISRSASTEKEISPEAQVWNIGDSDNSVDTVQNQPTSSKPS
FT                 RSKQDKELRTNARDSSEKENSSPRTEEPSIQLRKQPVVKLRRLGERSRDRN
FT                 ILAKRKEDDNSNKLSSKQQTRSYYRERTPNPRKSSKADKLERRREQKRLAN
FT                 QRYRRKVKETLEAAKRQLAHARSDTTDSSDAEPTRVTPVNSPSGGSVQRPI
FT                 PAVQRGRKAERKAATRDETESRDAKLIRRPVIVEDRRQSPKIRVKKQSHHQ
FT                 QGTVVGGRAGERNLTTPTRRPGPSQDHPNRARSIQDHPDLERSIQDRPRQE
FT                 RSNQHHPDRERTVSDHPDLERTIRDHQDLEMQDRDHQDLEVSDRDQRDLEV
FT                 QEPDLETRERDHPDLEGRDPKDPDPEGSDHEYPDPEDPEIMKQICEGEDPE
FT                 HRPGGNDNEDDDRRVLLQWLTGPE"
FT   CDS           join(3547..7956,7960..9408)
FT                 /product="Gypsy-1_HAS-I_1p"
FT                 /translation="MSIAEGKGNPKGDVAFIESEIGPATRSGRIYGPSQPI
FT                 IKPPTFVPEGSQGLSRTTSEISLASRTDAPNVVTASGNADTDRAMLGNSVL
FT                 DPSLTGWGFEKSSILNSTGRSAIAKSRPPIDPRIRQMSEQFDEMKAMVKGM
FT                 AVQLEFLTKINTNKPDSDEPKMTTEQWNSYRVQKRYGSNESIETKDDARSQ
FT                 ISAVSANRDHIGNRNENNRMHERRDDRDEDLYDPEHDREYISERHRSKIPR
FT                 CVEIEAKQRYATRDPPRGNPFGELGFSGRGDSQHPIRFFDDFIDIADYEEL
FT                 RDRDRLYFFKHCMTGRAREWFDLQEFREFGEVVIKFRNKFWGRVEQNKLRD
FT                 RVRNGMYNANTGRTMAEYVEKFARDVKYISPQIPEFELVQDLSQHFTVEIY
FT                 NDLLRLRVDTIPELCHQLNIIQDYEHNRIHMAIKEKMSRELEAAQRSARYK
FT                 PYGESIYGKRDEPEYPRQSPDRKYQREPRSDSRDSRRGYYSAKRAEFRDYR
FT                 DPPTKWIPRKETSREYVDRRESSAGRKGGSARNNERFEEQRTDPRSRSANR
FT                 DNRERSRQVKNERVEERISTPRDPSGTRNNRENSRQRDVSRQREPARERET
FT                 SRIRETSRPRESSRSREQQQGVSSLRTEEILTELREFERREQNFKEDNKNV
FT                 PIINVAIIAEKGEQELDRLSVRTLLDTGATVSAIDPSVIRNFEQRIREDRK
FT                 TEDKELFPRVRINKTHMRGAFNQKGVHTNALVQLTIEMKDMQNRPKRYTHE
FT                 FYAIETLFIPMILGADFLGKYRIAVTCPKPTALIATNRTVESNEALDLRMP
FT                 STPEPVHETTVKWEIIDLCEPEPGIIKLEEFEAKEPKNENLNASRESLHTR
FT                 SEEGSEDACAPETEGLEDTLAPAIEDPEDPLAPRVEDPENSLVSTDENFTH
FT                 RLENLLEHYSLLLDGSLGKIRGYEHEIRMTTDKPFKGKSYPIPQKHLEEVR
FT                 RQLREMENLGVVSRAATQYISPLVAVTKPNGKIRICLDARNINDRMENDHA
FT                 QPPTIEEVLANIGHKSIFSKLDITQAYWQIPLTANSRQYTGFSFDHQTYIF
FT                 ERLPFGIKTAGASFTRAIEAALKGKPELRKHVIVYLDDVLIASENETDHLS
FT                 HLASVFEALQEAGFRLNRDKCEFARDRIVFLGHDITRVHVTITEETKRNIV
FT                 DFPRPRNKKEIQAFLGLVNWDRRFVPKLSRHTVHLEKLLKKDTRFQWDQRM
FT                 ERAFSDIKESVRNAPSLYLINPDRKYGIETDASTVGIGARLFQYDDAGREY
FT                 TIAYASRSLKGAERRYTVTEVEGLALVWCLKKWRVLLMGRPVRVKTDHRAL
FT                 KFISACAVASQRMARWLAFLQEFDLDINHIPGTANTTADALSRKPVKRNHR
FT                 LPTERTTRWKRYRGATDFDSSSASEESDPSHEWDHEGRKMYVPRICLMADI
FT                 HEGENTRDWVNLIREAQINDPAIIQRTAENPERYRTRNGFVRKTMDDGSDR
FT                 VVIPDIAWELVLRIHRYLTHFGTDKVLEFARRYFEIANIERLTRDVVASCQ
FT                 LCIATKVYARPTRGPEYYELPNDIGEVVSVDLYGPLPRSYDGCAYVLVVMD
FT                 QFSKFTKMYPMRNQKLRTIEQILEEYYFRDVNRVPKTILTDCGGQFLAGRW
FT                 KEFARRLGIKTRKTSPYNPQSNPVERVMRELGRSLRAYACDDHRRWDEIVP
FT                 RVEQVINATEHSSTGAPPAVLENRQVDLVIGPPEILRSRGAPPIDRDRLLE
FT                 AASERLRIMARKRRRQSEKRGTAIQYQQGDLVWIKSHRRSDQRHSKIHKLF
FT                 PLYEGPFRVRDEIHPNVYTIERMTSKLIGPFNTRQLRPHRTSAWRPVEVNR
FT                 EQPSQERSTTTGTMESAEIDTPYESGHSDPPSTPQRKRPRRRVRLAAVARR
FT                 LSSDSEDSCERWIQPRRTSKVENQIDSPPDTDDTWEIVKRPKRVRKQSKIR
FT                 NGGSKTKLSPTQTNNPPLTNPREHPEDIA"
XX
SQ   Sequence 11420 BP; 3714 A; 2639 C; 2791 G; 2276 T; 0 other;
     aagtttattt tataatttta taagccgagt ttatttctat aacgtcgaag tcggtaatac        60
     cgaccgggga gaacgccctc taggcgaacc cacggaggag cgtgactatg tgttcggttc       120
     gggaaataag gttccgcatc tccacacact cgacggactg tgtgaagatg cggaaggcgc       180
     gaaggcgcca agttagtagc tctcgaaccc cagagcagac cgaacgcgta tgtgaaagca       240
     ctccgtcgcg tgcgacgtta aataaaaaac ccccgcggac gcgacgcgaa taggcgagta       300
     agtaacggcg gatagtgacc ctttgtgtaa aaggttgaga ataaagactt ttgtgaaata       360
     cacggtgtta gaactttgtt ccgggatccc cgtccgtctt cggaaatctg cgccgtggct       420
     taaccaagtg gacgggtggc gaccatctta tcgaacctct agaacctgca ttcttcaccc       480
     tctggacccg aggaaggact cgcagtccgg ttacactgtc aaaagaggaa ggcgaacgac       540
     cggccgaccc gtgttctaca aggaggacgt caaccgcggc tcattaccga gctgactgac       600
     accgacgagt tccgggttag ccgccggaca ccacaaaacc tacgtggcga ccgtgagtgt       660
     aagagtgatt aagtgaatgt cgtaaaacaa cgttccgaag tgaaccaaag tgtagtgccg       720
     ccgaaaaaat tgtgaaattc cgccccgaag cagcgtcgcc gatattgaga ttgaccatat       780
     attactacgc gcgcacggaa gtagtgcccg ccatattaaa aaagaacgcg ccgagccgcc       840
     atagcgagcg gacgtgcgga gagtcgcgcg cgcgtataca gtgacattat tacatcgccc       900
     acgtcgcgaa accgtcgaga gtgtccggtg cgagtgcgcg acaaagggac taaaaggatt       960
     atcagtgaaa aagtgcccgc cgcagctgtg aggacgaagg aatccatccc gggacagatc      1020
     tggttgactg gacgaacatc cgaaagtgat ttcggcaacg agggacaaag actgcgtacg      1080
     tgaacgaccc gacgcaaaga aaacaccaac ggtgagtcga gaaactcaaa ttactacaca      1140
     ttacacacga cagaccaaag attagtgccg gtagtgcgcg cgagaggtta gaataacctc      1200
     aacatagagt cagtgcttag agttagcatt tcgagacagt gaacgcaatt ctcgcgttaa      1260
     aattcaagta gagattgaaa atctaaagct aacgacatcc ggaccgtcaa gatcgaacaa      1320
     cgcgttccgg agatattgat tttaaagatt ttattcattt ttatgacact tgacaaagga      1380
     acaccctcat acgtgaggcg aatcgaaacc gcgagtgaaa aactagcgag agaataaaaa      1440
     gacgaatctg tagagtccag aaacgtcgag atcgataaac ggagttagga aatataaaga      1500
     tttatagatt tgctgtcagc ggataacaaa gatagtttgc taattgcata gcgcatgccg      1560
     aaccaagcat gagagcgaat tcctgtttag attcgacaca agtagacgta aaaacgaact      1620
     cagcgagcca agaaacatta aattcggttc agaaataact gagatattca aagttacaat      1680
     tggaacagtc gctgcgactg cgactaaaaa tatagagtca cttttcccgg atagattttt      1740
     ctctggacga attacggcaa agccgcttaa attttcaaaa agaagatcaa attctgagtc      1800
     tgctcgatca agaaccattc aatttgcata attagaacgc gaaatattaa ttattttcac      1860
     tctaaattga ctcgtttccg actaaatttg gcactaacag gtctgaaagc gaacctttcc      1920
     cacgaacctc tgagcaaaat tcggcttaga tgccatagta gagtagctaa aaagaaacta      1980
     gcaaacaaaa aatcaaaggg attaattaac aattaccaga gttaccgcta aacaaagatt      2040
     cagtgtcaga aaaagtcatt ttacaccact attttgagat aaaatttaaa caaggcacct      2100
     gacatcattg caactaaaat tttcaaaaag gaaataaaaa acccgacttg ttgacacccc      2160
     aacggtgtaa ttagtgcaaa tagaaccgga gatattaatt attttgtgga aaaaaaggcc      2220
     catttccgaa gaaaatctgt atgtcaaggt atatgagcaa acttttcaac tgtaagactc      2280
     agccaaattt cgctcagatg cttcatttgg tagcgtaata agctacttgc atgcgaaaaa      2340
     ttattaagat taagcaacaa ttgactgaga tagaacattg acagttttcc taacctagct      2400
     cgtggtaaag tgaaagtgat cgtcacgaaa aagcatttcc gagcattgga cgtatttcaa      2460
     gcaataatat tcaaaaagta aagcaaaaac tgaaaccagt gacacctcag cgatcaagat      2520
     taagtcatta atagctgaga tattaaataa actagttttg aggtcgctgc gacttgcgac      2580
     aaagaaataa catcaatatt ttggaataac ttttttgttt gaagtcagat tttgatgcaa      2640
     cttgaatttt tagttaagga ataaaaaact gaacttgcag acaccctgag tggataatta      2700
     taacaaatag tttattttaa attaattatt ttgtaccaaa aatgaccact ttccgatgag      2760
     attttacacc ataaggtcac agagtgaact tttaaacgga aagacttaac tgaattccac      2820
     ttagaggctt tactagctaa cattgaaaca tacttggaca cacaacattg ccaaaattta      2880
     ttaacaattt accgagctat ggttaataca actttcagtc ttctcagata ttagataaca      2940
     aatattctgt gttcctatcc cacttcccga ttaatttcga ctacaagcga aggaaacaaa      3000
     taacatacgc gttatattaa gcgcaagatc taattatctg tacaagtaga cattaaataa      3060
     accagatagt tcgaggtcaa agggacccaa aatcattcgt gatactctaa gacataatat      3120
     tgcgagcgtc gtcccctcgc aatgtacatc catacgttac tcaacagtgt acaataaagt      3180
     tcacaatatt caaccgtagt tataaataat atttaagctt agtatataag tgaacaactt      3240
     acccggtgta ttgtatttgc atttttttta tataaaatag tttttaagtc ttatatttac      3300
     atacgcgccg aatattatag aatatttatt agcaaataag gattatctcg ggatcatcaa      3360
     aaagcgcaaa cgtaggtaaa cttttaacga tataaatacg cttacgccgt aaacgcctag      3420
     aatctcgaag tcgttattaa caaatcgata aactagaacg cgatcacttt cggttagcga      3480
     gaaatacgat agatccgtga gactttggta agacgcgtag agaatccgcg tagaaagaga      3540
     gtaaaaatgt cgatcgcaga gggcaagggc aaccccaagg gggatgtagc gttcatagaa      3600
     tccgaaatcg gacccgcgac gcgatcagga cgaatatacg gaccttcgca accgatcatc      3660
     aaaccgccaa cgttcgtacc cgaaggaagt caaggcctaa gtaggaccac atcggagatc      3720
     agcctagcgt ctcggacgga cgcgccgaat gtcgtgacag ccagcggcaa cgcagacacc      3780
     gacagagcga tgttgggaaa ctccgttcta gatccaagct tgaccggctg gggttttgaa      3840
     aaatcgtcga tattgaacag taccggtaga tccgcgatcg cgaaaagcag accaccgata      3900
     gatccgcgaa ttagacaaat gagcgagcaa ttcgacgaaa tgaaagcgat ggtaaaaggt      3960
     atggcggtcc aattagaatt tctaacaaag ataaatacga acaaacccga cagtgacgaa      4020
     cccaaaatga caactgaaca atggaacagt tatcgcgtgc aaaagcggta cggaagtaac      4080
     gaatcgatag aaaccaaaga cgacgcgaga tcacagatat ccgcggtttc cgcgaaccgt      4140
     gaccacatcg gaaaccgaaa cgaaaacaat cgaatgcatg aacgccgcga cgatcgagac      4200
     gaggatctct atgatccaga gcatgatcgc gagtatatat cggaaagaca cagatcgaaa      4260
     ataccgcgtt gcgtagagat agaagcgaaa caacgctacg cgactcgcga tcccccgaga      4320
     ggaaacccct tcggggaact tggattttca ggtcgcggcg attcgcaaca tccgatacga      4380
     tttttcgatg attttataga cattgcggat tatgaggaac taagagaccg cgatcgtctg      4440
     tacttcttca aacattgcat gacagggcga gctagagagt ggttcgatct ccaagagttt      4500
     agagagttcg gtgaagtagt aattaaattt agaaacaaat tctggggaag agtcgaacaa      4560
     aataaactta gagatagagt tcgcaacggc atgtacaacg ctaacacagg ccgcacaatg      4620
     gcagagtacg tagagaaatt tgcccgcgat gtaaaatata tctctcccca gataccagaa      4680
     tttgagctgg tgcaggatct cagccaacac tttaccgtag aaatatacaa cgatctcttg      4740
     agactccgag tcgataccat tccggaactg tgccatcaac ttaacattat ccaagactat      4800
     gaacataatc gcattcacat ggcgattaaa gagaaaatgt cgcgtgaact agaagccgcg      4860
     cagcgatccg cgagatacaa accgtatggt gagagcatat acggtaagcg cgacgaaccg      4920
     gaatatccgc gacaatcgcc ggaccgaaag tatcaacgcg aaccgcgatc cgacagccgc      4980
     gactcgagaa ggggatatta ttcggcaaag cgagcggaat tccgcgatta ccgcgatccg      5040
     ccaacgaaat ggattcccag gaaggaaaca tcgcgcgaat atgtggacag gcgggagtcc      5100
     tctgcgggac gtaagggggg ctcagcgcga aacaacgaaa gattcgagga acaaagaacg      5160
     gatcctcgaa gtcgatcggc taatagagac aatcgcgaac gttcgagaca ggtcaaaaac      5220
     gaacgggtcg aggagcgaat atcgactcct cgagatccat ccggtactag aaacaaccgc      5280
     gaaaactcga gacaacgcga cgtatcgcga cagcgagaac ccgcgagaga gagagaaacg      5340
     tcgcgcatac gcgaaacctc tcgccctcgc gagtcctcga ggtcacgcga acagcaacag      5400
     ggagtatcat cccttagaac ggaggagatc ttaacggaac tgcgcgaatt tgaacgccgc      5460
     gaacagaatt ttaaagaaga caataaaaac gtgcccatca tcaacgtggc aattatcgca      5520
     gagaagggtg aacaggaact cgatcgctta agtgtcagaa cccttctgga cacaggagcg      5580
     acggtatccg cgatagaccc gagtgtcatc cgtaatttcg aacaacgtat tcgggaggat      5640
     agaaagaccg aagataagga attgttccct cgcgtacgca taaacaagac tcacatgcgc      5700
     ggggcgttca atcaaaaggg agtgcacacg aatgcactcg tgcagcttac aatcgaaatg      5760
     aaggacatgc aaaatcgtcc aaagagatac actcacgaat tctacgcgat agagaccctg      5820
     ttcattccaa tgatactagg cgccgacttc ttagggaaat atagaatagc tgtaacgtgc      5880
     ccgaagccga ccgcgctcat agcaacgaat cgaaccgtag aatcgaacga agcgctagat      5940
     ttaagaatgc catcgactcc cgaacccgtt cacgagacca cggtaaaatg ggaaataata      6000
     gatctgtgcg aaccggaacc cggcataata aagctcgaag aattcgaagc gaaagagcca      6060
     aagaatgaaa acctaaacgc gagccgcgag agcttacaca cgagaagcga agagggttcc      6120
     gaggacgcat gcgcgcccga aacagaggga ctcgaagata cgcttgcgcc cgctatcgaa      6180
     gatcccgagg acccactcgc gcctcgcgtc gaggatcctg aaaacagtct cgtgtccacc      6240
     gacgagaact ttacgcacag actagagaat ttgttggaac attatagttt gttgttagac      6300
     ggatccctcg gaaaaatccg aggatacgaa cacgagatcc gcatgactac cgataagcca      6360
     tttaaaggta agtcgtaccc tattcctcag aaacacctgg aggaagttcg tagacaatta      6420
     cgcgagatgg agaatctcgg agttgtctcg agggcagcga cgcaatatat aagccctttg      6480
     gtggccgtga ctaagcccaa tggaaaaata cgaatctgcc tagacgcgcg taatataaat      6540
     gaccgaatgg agaatgatca cgctcagcct ccaaccatcg aagaggtatt ggcgaacatc      6600
     ggccataaga gtattttctc gaaattagat ataacgcaag cttactggca gataccgtta      6660
     acggcgaact cgagacaata cacaggattc tcctttgacc atcagacgta catctttgag      6720
     aggctgccgt tcggcatcaa gaccgccggc gcgtcgttca cgcgagcgat cgaggcagca      6780
     ctcaaaggga aacccgaact gcgtaaacac gtcatagtat atctcgacga cgtgttaata      6840
     gcgagcgaaa acgaaacgga ccacttgtcg caccttgcga gcgtgttcga agcgttgcaa      6900
     gaggctggtt ttcgtttgaa cagggataaa tgtgaattcg cgagagatcg tattgtcttt      6960
     ttgggacacg atatcacgcg agtccacgtg accatcaccg aagagacaaa gcgaaatata      7020
     gtagactttc cgaggccgcg aaacaaaaaa gagatacaag cttttctcgg tcttgttaac      7080
     tgggaccgtc gtttcgttcc gaaattatcg cgacacacgg tacacctcga gaagctgcta      7140
     aagaaagaca ccaggttcca atgggaccag agaatggagc gagcgttctc agatattaaa      7200
     gaaagcgtac gcaacgcgcc tagcttgtat ttgataaatc ccgacagaaa gtacggtata      7260
     gagacggatg cgtcgaccgt cgggatagga gcaagactgt tccagtatga cgatgcaggt      7320
     cgcgaataca ccatagcgta cgcgagccgc agcctcaaag gcgccgaacg ccgttacacc      7380
     gttacggaag tcgagggatt agccctcgta tggtgtctta aaaagtggag agttcttttg      7440
     atgggacgac cggtgcgcgt taagacggac catcgagcgt tgaaatttat cagcgcgtgc      7500
     gccgtggcga gtcagcgcat ggctagatgg ttagccttcc ttcaggaatt cgacctggac      7560
     atcaatcata taccaggaac agccaacacc acggcggacg cgttgtcgcg caaacccgtc      7620
     aagagaaatc accgacttcc cactgagcgt actacccggt ggaagagata tcgaggagcg      7680
     accgatttcg actcttcctc cgcgagcgaa gaaagcgacc ctagtcacga gtgggaccac      7740
     gaggggcgta aaatgtacgt gccccgcata tgccttatgg cagatattca cgaaggcgag      7800
     aacactcgcg actgggtaaa cttgatccgt gaagcgcaaa tcaatgatcc cgcgattata      7860
     cagcgaacag cagagaatcc agaacgatat cgaacgcgca acggatttgt aagaaagacg      7920
     atggacgacg gaagcgaccg agtcgttata ccggactgaa tagcctggga actcgtactc      7980
     aggatacatc ggtacttgac ccatttcggg accgataaag tactcgagtt cgcgaggcga      8040
     tattttgaaa tcgccaatat agagagacta actcgagacg tagtggcctc atgccaattg      8100
     tgcattgcga ccaaggtcta cgcgaggcct acacgaggtc cagaatatta cgaacttcca      8160
     aacgacatcg gcgaagtcgt ttccgtcgac ctatacggtc cattgccgcg atcctacgat      8220
     ggatgcgcct atgtactcgt ggtcatggac caattctcaa aatttacaaa aatgtacccg      8280
     atgagaaacc aaaagctcag aaccatcgag caaatcctgg aagagtatta cttccgtgac      8340
     gtaaatagag taccaaaaac gattttgaca gattgcggtg gccagttcct tgcagggcgc      8400
     tggaaggaat tcgccagacg tttaggaatt aaaacacgca aaacgtcacc ctacaacccg      8460
     cagagtaatc cggttgagag ggtgatgcgg gagttgggac gttccttacg agcgtacgcg      8520
     tgcgatgacc accgacggtg ggacgaaatc gttccgcggg tcgaacaggt catcaacgcg      8580
     accgagcact cgagcaccgg agcgcctccc gcggtattag aaaaccgcca agtagatctc      8640
     gttataggac ctcccgagat actgcgatct cggggagcac ctcccataga ccgtgacagg      8700
     ctgttggaag ctgcgagcga gagactccga attatggcgc gaaagcgaag gcgtcagagc      8760
     gagaaacgcg gtaccgctat tcagtatcaa cagggggatc tcgtctggat aaaatcgcac      8820
     aggcgtagcg accaacgcca ttctaagatt cataaattgt tccccctata tgagggacct      8880
     tttcgcgtgc gagacgagat ccacccgaac gtatacacga tcgagcgtat gacatcaaag      8940
     ctgatcggac cgtttaacac gcgccagttg cggcctcatc gcacttcggc ctggagaccg      9000
     gtagaagtaa acagggagca gccgagccag gagcgatcga caactacggg aaccatggag      9060
     agcgcggaaa tcgacacacc gtacgagtcg ggacactcgg atccaccgag taccccgcaa      9120
     cgaaagcgac caaggaggag agtccgacta gccgcagtag cgaggagact gtcatccgac      9180
     tccgaggatt cgtgcgaacg ctggatccag ccccgcagaa cgagtaaagt cgagaaccaa      9240
     atcgattcgc cacctgatac agacgacaca tgggagatag tgaaacgacc aaaacgagtc      9300
     cggaaacaat caaaaatccg gaatggcggg agtaagacga aattgtcacc cacccagact      9360
     aataacccac ccttaacgaa tcctcgcgag catcccgagg atatcgcata aatggttcag      9420
     tagatctcga ggaaaatagt gagaaaactc taaaaaacga gtgtttctct tactaattac      9480
     agatgacgac gagctacaag gatctccaac gacaatacaa tgagctgcgc agaaaacaag      9540
     aggaaactcg acaaaggaga aaagagctgg agaagtataa acaacaaagg ctacaagaga      9600
     agatcgatct catcaggcaa tcaatagcaa aagacgaaga ggctatccaa caactagagg      9660
     cttcatcatc gtcggaggag accgaaaaga ctcagaccat cgaacctcca tgcggagaaa      9720
     cgccgacaaa gatacaaaaa tacaaaagcc acatccagcc cagacaaata gcgccaagaa      9780
     tatccagaag tgcatcgaca gaaaaagaaa tatcgccgga agcgcaagta tggaacatag      9840
     gagactccga caattcggta gacacagtac agaatcaacc aacgtcatct aagccatcga      9900
     gatctaagca agataaagaa cttcgcacaa acgcgagaga cagcagtgag aaggagaaca      9960
     gctcacccag aaccgaagaa ccgtccatac aacttcgtaa gcaaccggtg gtaaagttaa     10020
     ggcgtctcgg agaaagatcg cgagaccgaa atatactcgc aaagagaaag gaagatgaca     10080
     atagcaacaa gttatccagc aaacaacaga ctaggagcta ctaccgagag agaacgccaa     10140
     acccacgaaa atcatcgaaa gcagacaagt tggaacggag aagagagcaa aaacgtttgg     10200
     cgaatcaacg ataccgtcga aaggtaaaag agacactgga agctgccaag cgacaacttg     10260
     cccacgccag gagcgacacg accgattcga gtgacgccga acccacacgc gtaacgcccg     10320
     tgaattcacc gtcaggcggg agtgtgcagc ggccaatacc tgcagtgcag agaggacgaa     10380
     aggccgaacg taaagcagca accagagacg agaccgaatc gagggacgcc aagctgataa     10440
     gaagaccagt gattgtggaa gaccggaggc agagcccgaa gatccgagtc aagaagcagt     10500
     cccatcacca acaggggacg gtggtcgggg gcagggctgg tgagagaaat ctaacaacac     10560
     caaccagacg cccaggacca agccaggacc atccgaaccg tgcaaggagc atccaggacc     10620
     atccggacct ggagaggagc atccaggatc gaccgcgcca ggagaggagc aaccagcacc     10680
     atccggaccg ggagaggacc gtaagtgacc atcctgacct cgagaggacc atacgggatc     10740
     accaggatct cgagatgcag gatcgggatc atcaggatct cgaggtgagt gaccgggatc     10800
     aacgggatct cgaggtgcaa gaaccggatc tcgagacacg agagagggat catcctgacc     10860
     tcgagggacg tgacccgaag gatcctgacc ccgagggaag tgaccacgag tatccggacc     10920
     ccgaggaccc cgagatcatg aagcagatat gcgagggtga ggacccggag catcgacccg     10980
     gagggaacga caacgaagac gacgacaggc gagttcttct gcagtggctg actggtcccg     11040
     agtagacctc gagacagaga tcaggtaatc gcgagatcaa aggatctcga ggtcagtcat     11100
     aaatgactgc acgaaaccga tcaaaagtta tgttatattt ttgtttatta tgcgactagg     11160
     cttattatta tataatttta gttaggacct cgagggctta gagaaggtaa gaatgtgatc     11220
     tcgagtcccg gtaaaaccta gtctttgcaa tacacgtacc tgctataatc ggaaaagatt     11280
     catattagtt ttgtttagtt cattatttta tacttacctg atttgtagaa gcatcccacg     11340
     aagtcctgtg atgactcgac ctgcgaacat aaaagaaata ttattatata atcatatata     11400
     gccatatata tatatatttt                                                 11420
//
ID   Gypsy-1_HAS-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   AEAC01014456;
XX
DT   20-JAN-2011 (Rel. 16.02, Created)
DT   20-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Harpegnathos saltator genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HS_;
KW   Gypsy-1_HAS-I; Gypsy-1_HAS-LTR.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Harpegnathos saltator genome.";
RL   Direct Submission to Repbase Update (02-FEB-2011).
XX
DR   Genome; AEAC01014456; Positions     191       2.
XX
SQ   Sequence 190 BP; 57 A; 32 C; 46 G; 55 T; 0 other;
     tgtattgtta gtattaagat agtcataaga ggattttacg attttgttat taatcattat        60
     atgaagaata tctattattt gttataaacg ccgtcagcgc ctgtgcgcgc agcgacagcc       120
     gaagcgtcat catgaacacg gtatagagtg cgagtggccg gcgtctgcga taagtctaaa       180
     aaagcgagca                                                              190
//
ID   Gypsy-1_HeAr-I repbase;    DNA;    INV; 4565 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_HeAr-LTR; Gypsy-1_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4565
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5551-5551 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..792
FT                 /product="Gypsy-1_HeAr-I_1p"
FT                 /translation="MESKSTTITTAAAPVAFGLTEGLIEKFSGDDKSYSSS
FT                 KWAQDIEDNAEIFQWTPQQTLIVARRSLTGTAELWLKSEKAFKTYGDLKAA
FT                 LVKEFPDTANVKEMHELMAARKKLKGETYYQYMLHMKELARRAKFPDYIAI
FT                 QYIVDGIDDYESNKVILYGVTTFPALKEKLAFYEKMKSKTREREKRTERLK
FT                 GHARSAEASSAASGSARRCYSCGDMGHEAGVCKTD"
FT   CDS           786..3773
FT                 /product="Gypsy-1_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NGLKCFGCNQFGHIRNQCPVNPMRSTATASASGHSGA
FT                 KMAGAGGSGAHGGRGGGASGSGEAGKLGPKRPAAMFGTVNEVSGNETVRAV
FT                 IDNETSLTLTDVNTVNVTATSYEDRNVNITHVNKCVRKPVKDIKINNTVLN
FT                 ALVDSGSDVNLLSLLYLPMLNAEVASETLTMSGLGRSEIQSRGSVSVGLEI
FT                 DNQCFNGVVFHLVPPEVMPYDVIIGQEFLGRVTVVMNEGGIRFFPIGCCEW
FT                 VGQIDCFPGCVAVNVDHIQDPAVRSEVMQCVEEYKPLYKEEAPIQLQIVLK
FT                 DDIPVRQRPRRLSLMEQQVVEDQIEEWLDKGIVRVSFSDYSSPLVLVKKKD
FT                 GSTRVCVDYRQVNKKIVKDEFPLPVIHDLIDKLQEAKVFSVLDLKSGFFHL
FT                 KVSEESIKYTSFVTHHGQFEFLRAPFGLSTCPKTFMRFVSIIFRNLISQGV
FT                 LIIFIDDIIIPALDEVQAVSRLKQVLEVAAHYGLEINWKKANLLQREVEYL
FT                 GHRVKDGEVRPSTDKVDAVIRYPEPRTLKHLHSFVGLTSYFRKYIENYASV
FT                 AKPLTDLLKKNTEFIFEDKERKAFETLKNKLASGPVLKIFNPKLKTELHTD
FT                 ASGVALAAILMQHHPGSGLHPVHYMSKKTTDIQSRYSSYELEALAIIEGIR
FT                 KFRHYLYGIPFKIVTDCKAFELTLKKKDLSAKVARWVLMLSEYDFEVEHRA
FT                 GSRMQHADALSRIPTVAVVTTLQESLRQAQDQDDGIKAIKEILRGGSPYDD
FT                 YWLENGVLYKTEQKLFVVPRSLEKEIINRVHSKGHFGKSKMKELLNKEYYI
FT                 RDVDKKMQDFLLSCIPCLLATRKEGKQEGFLNPIEKEGVPFDTLHLDHIGP
FT                 LTETRKQYNYILTVIDGFTKFVWLFPTKTTSSSETLRKIQIHQQIFGNPRR
FT                 FITDRGTAFTSNEFKSYCEEEKISHVKITTGVPRGNGQVERVHRILIPVLT
FT                 KLCLENPAVWYKHVSKVQRALNSTFQRSINTTPFELLMGVK"
XX
SQ   Sequence 4565 BP; 1408 A; 812 C; 1183 G; 1162 T; 0 other;
     gattttgggg gctcgtccgg gatcgatcaa cgacgaattt ccacgaagtt ttctacgacg        60
     caccggccgg cgcgacgcgg cggccattaa atttgaatta cgaagttacg gagcacgatg       120
     gaatcgaaat caacgacgat tacgactgca gcggcgccgg tggcgttcgg gctcacagag       180
     gggctcatcg agaagttcag cggagacgac aaatcttact cgtcgagtaa gtgggctcaa       240
     gacatcgagg ataacgctga gatatttcag tggacgccgc aacaaacttt gatcgtagct       300
     cgccggtcac tcaccgggac ggctgagcta tggttaaaat ccgagaaggc attcaaaacc       360
     tacggcgatc tcaaggctgc gcttgtgaag gaatttccag acaccgcgaa cgtcaaggaa       420
     atgcacgagc taatggcggc acgcaagaaa ttaaaaggcg agacgtatta tcagtacatg       480
     ttgcatatga aagagctagc gcggcgtgcg aaatttcccg actacatcgc gatacagtac       540
     atcgtggatg gcatcgacga ttacgagagc aataaggtga ttctgtacgg cgtgaccacg       600
     tttccagcat tgaaggaaaa gctggctttc tatgagaaaa tgaagtccaa aaccagggag       660
     cgagaaaaga gaaccgagag gttaaaaggt catgcgaggt cggcggaggc gtcctcggca       720
     gcatcgggat cggcgaggcg gtgctatagc tgtggtgaca tgggacatga agcgggtgtg       780
     tgtaaaacgg attgaagtgt tttgggtgta atcagttcgg tcacattcgt aaccagtgtc       840
     ccgtaaatcc gatgagatct acggctacag catcggcatc gggtcattca ggcgccaaga       900
     tggcgggcgc aggcggcagc ggcgctcacg gcggccgagg aggcggggct tccggttccg       960
     gggaggccgg aaagttggga cccaagcgac ccgcggctat gttcggaacg gtgaacgaag      1020
     taagcggaaa cgagactgtc cgcgcggtca tagacaatga aacgtcactg acattgacag      1080
     atgtcaacac tgtaaatgtg acagctacga gttacgaaga tcgaaacgtt aacatcacgc      1140
     atgtaaacaa atgtgttcgg aagccggtaa aagacattaa aattaataat acagttttaa      1200
     atgctctcgt agattcaggt agtgatgtga acctattatc tttgttgtat ttacctatgt      1260
     tgaacgccga agtggcgagt gaaacgttaa cgatgtctgg attaggccgt agtgaaatac      1320
     aatcaagggg cagcgtctct gttggacttg agattgataa tcagtgtttt aatggtgtag      1380
     tttttcattt agttccacca gaggtgatgc cctacgacgt aataataggt caagagttcc      1440
     tgggtcgtgt tactgtggta atgaatgaag ggggtattag gttttttccc attggttgtt      1500
     gtgaatgggt tggtcaaatt gattgttttc caggatgtgt agcagtcaat gttgatcaca      1560
     ttcaagatcc agcagtaagg agtgaggtta tgcaatgtgt tgaggagtat aagccattgt      1620
     ataaggaaga ggccccgatc caacttcaaa ttgtattgaa ggatgacatc ccagtgcgac      1680
     agcgacccag acgactgtca cttatggagc aacaggtagt ggaagatcaa atcgaggaat      1740
     ggcttgataa aggcatcgtg agggtgagtt tctcagatta ctccagtcct ttagtgctag      1800
     taaagaagaa agatggttcg actagggtct gtgtggacta taggcaggtc aacaagaaaa      1860
     tagttaagga tgaatttcca cttcccgtaa tccatgatct gattgacaaa ttgcaggaag      1920
     ctaaggtatt cagtgtactt gatttgaaaa gtgggttctt tcatttgaag gtcagcgagg      1980
     agtctattaa gtacacatca tttgtcactc accacgggca gtttgaattt ctccgtgccc      2040
     cgtttggttt gtccacctgt cccaagactt ttatgagatt tgtgagtata atctttagaa      2100
     atttgatttc ccaaggagtg ttaatcatat ttatcgatga cattataatt ccagccttgg      2160
     atgaagttca ggctgtatcg aggttgaagc aagtgctaga agtcgcagca cattatggct      2220
     tggagattaa ttggaaaaag gcgaacctac tgcagcgtga agttgagtac ttgggccaca      2280
     gggtgaagga tggagaagta cggccgagta cagataaggt ggatgcagtc ataaggtacc      2340
     ctgagccaag aaccctcaag cacttgcaca gttttgttgg attgacaagc tatttcagga      2400
     agtacattga aaattatgct tctgtggcga agccattgac tgatttatta aagaagaata      2460
     cagagttcat atttgaggat aaggaaagaa aagcttttga gacactgaag aataaattag      2520
     ctagcggacc tgttctgaag attttcaatc cgaagttgaa gactgaattg cacaccgatg      2580
     cctcaggtgt agcattggct gcaatactca tgcaacacca tccagggtca ggcttacacc      2640
     cagtacatta catgagtaag aagacaactg acattcagag ccggtactca agctacgaat      2700
     tggaagcact agccatcata gaaggtatca ggaagttcag gcactacctt tatggtattc      2760
     catttaaaat agtcacagac tgtaaggctt ttgaattaac acttaagaag aaagacttgt      2820
     cagccaaggt agccaggtgg gtcctcatgc tcagtgaata tgatttcgaa gtggagcaca      2880
     gagcgggctc caggatgcag catgcagatg ctttgagccg cataccaaca gtggcagtgg      2940
     ttactactct gcaggagagt ttacgccaag cacaagatca agatgatggc ataaaagcca      3000
     taaaggaaat tttgagagga ggaagtccat acgacgatta ttggttagaa aatggtgtgt      3060
     tgtataagac tgagcagaag ctgtttgtag tgccaagaag tttggagaaa gaaattatta      3120
     acagagtaca cagcaaaggt cactttggaa agtctaagat gaaagagtta ctgaataagg      3180
     aatattacat tagagatgtg gacaagaaga tgcaggattt tttattgagt tgcattcctt      3240
     gcctactagc aacaaggaag gaaggaaaac aggaaggatt cttgaatccg atagagaaag      3300
     aaggtgttcc atttgatacc ctgcatttag accatattgg tccacttaca gagacaagaa      3360
     agcaatacaa ctacatactc acggtgatag atgggtttac gaagttcgta tggctgtttc      3420
     ccacgaaaac tacttcatca tcagagacat taaggaaaat tcagattcat cagcaaatat      3480
     ttgggaaccc ccggcggttc ataacagacc ggggaacggc atttacaagt aatgagttta      3540
     agagttattg tgaagaagaa aagatatctc atgtaaagat tactactggt gtgccacgtg      3600
     gtaatggcca agtggagaga gtacatcgaa tacttattcc agttttaaca aaactatgtt      3660
     tggagaatcc tgcagtatgg tacaagcatg taagcaaagt gcagagggca ctcaactcta      3720
     ctttccagag aagcataaac acaacaccat ttgaactact gatgggagta aaatgaaggg      3780
     taaggaagat ttggaaattc tacaactatt acaggaagaa aatacactac aatatgatga      3840
     aaatagagag aagataaggc agcaagccaa agaacagatt ctaaagatac aagaggaaaa      3900
     taaaaacaat atgatagaaa gaggaaggaa agttcaaagt ataaggaagg tgatttagtg      3960
     gcgattaaaa gaacacagtt cggtccaggg ttgaagctga aacctaaata cctaggccct      4020
     tatagagtgg tgaaatgcaa gcgtaaggat cgctatgacg tagagaaact tgatagttct      4080
     gtagagggtc cccagcgttc atccagttca gctgaccaaa tgaagagatg gcctcaacac      4140
     ggtgacgccg agatgctgga ggagtagcag tcaccttact ccgcaggtta ttattgcagt      4200
     tcttatttca ggaggggtta actttcgttc attatcacag tgccatggcg tagggctatc      4260
     tgtaccagag tatttactat gttatttttc tatgtaaaac taaacatttt gttttctaaa      4320
     cctataaatt gtattaagtt cgaagtaaca tttaaatgtt tttgccaatg tagagttgta      4380
     tgttttaaat tcagaaacaa gattgtcttg taggaagtag ttatgtgtat taggttgttg      4440
     tagagtatgg ttccagttta ttttatttaa ctcaattatg tagtggttat tatgatgttt      4500
     tagtctagtt agtacataag atttggtgta tgtctgagga cagacatgag tgcaggacgg      4560
     ccgaa                                                                  4565
//
ID   Gypsy-1_HeAr-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-225
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5539-5539 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 225 BP; 76 A; 30 C; 74 G; 45 T; 0 other;
     tgtgggaatg aatgtcgagt ggaatggaac gtgacagaat atgagggagg cgtgagcgag        60
     tgagcgaagg agtgagagag agggactgaa tgaacggggt tagaggcaac cacgcggtac       120
     tgagtgtaac gaacgagcca aagttgttga aataaaagtt gtaataagtg tttaaaacgg       180
     gattttattt caaagtcatc gatccccagc acgaagagag ctaca                       225
//
ID   Gypsy-1_HMM-I repbase;    DNA;    INV; 4595 BP.
XX
AC   CAEZ01010720;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HMM_;
KW   Gypsy-1_HMM-LTR; Gypsy-1_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4595
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01010720; Positions   10762    6168.
XX
CC   Positions [2020-2550] - Reverse transcriptase
CC   Positions [3628-4107] - Integrase core
CC   'AATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           13..4542
FT                 /product="Gypsy-1_HMM-I_1p"
FT                 /translation="MKRNRSDNIGRGVRRAEGTPTNQEEYEADYDRDVSPP
FT                 PARKMLKHLLVNEVDRAIRDLDQECETFDRAKNHRAASLIPEFDPEGEDCT
FT                 VSTWLKKIEQLGDIHNWSDDIKSFYLQDKLRGQARKWYNRLDEYNYTWGEW
FT                 KQMLLRAFPKHRDYSALLDEMMQRKKLPSETMTKYYQDKVAMCFRCKLSDS
FT                 ASVSCIIRGLPFSLQPNARAFQCVRPDELYEAFLCALDDYRGSTSEVRVPR
FT                 NEIKQLLPLEKKINPDIDPCPRCKKVGHLLRNCTLPDQRICFKCGAQGHIA
FT                 TRCQSSQTNREPLKSNNNVKDIKLLQNYDNTYKKVVKVNGVFVKAYVDTGS
FT                 QVNVMRNQIAKLLSLEVIPSRTILKGFSGGLLTSHGEVKFDLDIDNIRITC
FT                 SAYLTDVEMGDINLLIGQPVINSDNMSLIVSNGTATLHRQDSDFTTGINVD
FT                 EDPQRFKVLTSCQETLPPGISIIKILVPGNDENVNICTAARHHDLQGVCYS
FT                 LPATLLRGSQGYMKVMNNGDKDIVWEAGQVLTRAERCEEPTTASQVSCKAM
FT                 PLFSSLPILSHMPSLCKVSSLSDRDKSINILNTFDSRDSNTCIGGVLLNDI
FT                 KIGNLNDNQRHNLLNILFQYRDSFASSTKDLGCTKLIQMKIRLNHNQPIYR
FT                 QPYRHSLSEREIVKSKVKELLGAGIIKESESNYASPVVLVKKKNGDSRLCI
FT                 DYRALNAATIKDKYPLPNIEDHISKLAGKKYYTCLDMAQGYHQLMLAPEDT
FT                 YKTAFICQEGQFEYLRVPFGLANSPSVFMRLINKIVNSIQNMLSHSDSSAN
FT                 EILAFLDDILLPSVDIKSGLKMLKIVLSKFQLENLKLNMKKCAFLQDKVTY
FT                 LGHEISEDGVRPSESKLTAVSQFPVPKTVHEIRQFIGLCSYFRKFIYKFAQ
FT                 IARPLTDLTKKNMPWVWNTEQSSSFEKLKMCLCSKPVLALYDPSLHTEIHT
FT                 DACKVGIAGILLQKQLDNSLRPVMYFSRVTSPEESIYHSYELETLAVVESL
FT                 RKFRVYVVGRHIKVITDCTAVRATLTKRDMIPRIARWWLLIQEYDISVEYR
FT                 PGERMKHVDALSRNPIDAININRLEVSDWFYTVQSQDDKLKNIIEQLKSGT
FT                 ANINLTNDFVIVNARLYRKTLNGSRLVVPGPARWKIVQMHHDEIGHVGLKR
FT                 TMDLIKKDFWFPKMTKFIRKYVTACLHCAYGKGEHGKKEGMLHPIPKPNEP
FT                 FRVIHVDHLGPFCRTKKGYQYMLVITDAFTKFVIAEPTRTVNSVETVKALK
FT                 KMFALFGYPDRVVTDHGKAFTSRNFKKFVTDKQFKHTLTAIACPRANGQVE
FT                 RTNRTILNALRASDPSEAANNWPNCLPDIIWGINNTLNDTTGFKPYDLMFS
FT                 RSGKSRCDVSVSDREQEPIQARRTKARQRIVNASARMKRNFDKRRKNCHVY
FT                 RKGDLVLWKQAPTSSAARVNSKLDDIYSGPYIVTRVVGNDRYRIRSIKGLR
FT                 GYKNFVGLVSADSIRPYRSVAPISDSASSSDDQLDTEDLIDLLES"
XX
SQ   Sequence 4595 BP; 1499 A; 835 C; 975 G; 1286 T; 0 other;
     ctcagaagtg ggatgaagcg caatcgctcg gataatatcg gcagaggcgt ccgccgtgca        60
     gaagggacgc ctacgaatca agaagaatac gaagcggatt acgatcgtga cgtgtcaccg       120
     ccacccgcca gaaaaatgtt aaaacatctg ctagtgaacg aggtcgacag ggcgatacgt       180
     gatcttgatc aagagtgtga gacgttcgat cgagcaaaga atcatcgtgc agcgtcgctc       240
     attcctgaat ttgatcccga aggtgaagat tgcacagtgt caacgtggct aaagaagatt       300
     gaacagcttg gggatataca caattggagt gacgacatta aatcatttta tctgcaagat       360
     aaacttcgcg gtcaggctcg taaatggtac aatagactcg acgaatacaa ttatacgtgg       420
     ggtgaatgga aacaaatgtt attgcgagca tttcccaaac atcgtgatta tagtgcttta       480
     ttggacgaga tgatgcaacg aaagaaatta cccagtgaga caatgaccaa atattaccag       540
     gacaaagtgg ctatgtgttt tcggtgtaaa ctatcggata gtgctagtgt ttcgtgtatt       600
     attcgcggtc tacccttctc gttgcaacct aacgcacgtg cattccaatg tgtacgacca       660
     gatgaacttt atgaagcttt tctttgtgct ctcgacgact atcgtggatc gacgtctgaa       720
     gttcgagttc cccgcaatga gatcaaacaa ttactaccat tggagaagaa aatcaaccca       780
     gacattgacc cgtgtcctcg ttgcaaaaag gtaggtcacc tattacgtaa ttgtacacta       840
     ccagaccaac gtatttgttt taagtgtggg gctcaaggtc atattgctac tcgttgtcag       900
     agctctcaaa ctaatcgcga gcctctgaaa agtaataaca atgttaaaga cattaaattg       960
     ctacaaaatt atgataatac ttacaagaag gtagtaaagg ttaacggggt atttgtaaaa      1020
     gcctacgtag acaccgggag ccaagtgaac gttatgcgta accaaatagc taagttgctt      1080
     tctcttgaag ttataccttc acgaacaatt ttaaaaggat tttctggagg tttgcttaca      1140
     agccacggtg aagtgaaatt cgaccttgat atcgataaca ttcgtataac atgtagcgca      1200
     tacttaacgg atgttgagat gggagacatc aacctattga tcggacagcc agtgattaac      1260
     tctgataata tgtcgcttat tgtaagcaac ggtacagcta cactacacag acaagattct      1320
     gacttcacaa ctggaattaa tgtcgatgaa gatcctcaga ggttcaaagt attgacatca      1380
     tgccaagaga cattgccacc cggaatttca attataaaaa ttcttgtccc tggaaatgac      1440
     gagaatgtaa atatctgcac ggccgcacgt catcatgatt tacaaggtgt gtgctattca      1500
     ttacccgcca ctttactccg aggaagccag ggttacatga aagtcatgaa caacggtgac      1560
     aaggacatcg tgtgggaagc tggacaagtt ctgacccgag cagaacggtg tgaggagcct      1620
     actacagcca gccaggttag ttgcaaagcc atgccattat tttctagttt gcctatttta      1680
     tctcacatgc ctagtttgtg taaagtgtcc agtttgtcag atagggataa atcaataaat      1740
     attttaaata cttttgatag tagggatagc aatacttgta taggcggcgt attattaaat      1800
     gatataaaaa tagggaattt aaatgataac caacgtcata atttattaaa tattttattc      1860
     caatatcgag atagttttgc aagtagtact aaagatctcg ggtgtactaa attaatacaa      1920
     atgaagataa gacttaatca caatcagcct atatatcgtc aaccgtatag gcattccctg      1980
     agtgaacgcg aaatagtaaa atctaaagta aaagagttat taggcgcagg tattattaaa      2040
     gaatccgaat ctaattatgc ttccccggta gtgttagtga agaaaaagaa tggagatagt      2100
     aggttatgta tagattatcg tgcgctcaat gctgcaacaa taaaagataa atatccgtta      2160
     cctaatatcg aagatcacat atctaagcta gccggtaaaa aatattatac atgtttagac      2220
     atggcacagg gataccatca attaatgtta gccccggaag acacttataa aacagctttt      2280
     atttgccaag agggacaatt cgagtattta agagttcctt ttggtttagc caattcacca      2340
     tccgtattca tgcgtttaat taataaaata gttaactcaa ttcagaatat gttatctcac      2400
     agtgacagtt ccgcaaatga gattttagca tttttagatg atattttact accctcggtt      2460
     gacattaaat ctggattaaa aatgttgaag attgttttat ctaagtttca attggaaaat      2520
     cttaaattaa atatgaaaaa atgtgcattt ttacaagaca aagtgacgta tttaggacat      2580
     gaaatttctg aggatggagt cagaccatca gagtcgaaat taaccgcagt ttctcagttt      2640
     ccggtgccta aaaccgttca cgaaatacgg caatttatag gtctttgcag ttattttagg      2700
     aaatttattt ataaatttgc acaaatagcc cgcccgttaa ccgatcttac aaaaaaaaat      2760
     atgccctggg tatggaatac agagcaatct agtagttttg aaaaattaaa aatgtgtttg      2820
     tgttctaagc ctgtattagc actttatgat ccctcacttc atacagaaat acatacagac      2880
     gcgtgtaaag ttggaatagc aggcatatta ttacaaaaac aattggataa ctcgttacgt      2940
     cccgttatgt attttagccg tgtaacctct cccgaggaaa gtatatatca tagttatgag      3000
     ctggaaacac tagcggtggt cgagtcacta cgtaaatttc gcgtgtatgt agtaggtcgg      3060
     catattaaag taataaccga ttgtacggct gtgcgtgcca ccctcacaaa acgtgatatg      3120
     ataccacgta tcgcaagatg gtggttatta atccaagagt acgatattag tgtcgaatat      3180
     aggcccggtg agcgtatgaa acacgtggat gcacttagta gaaatccaat tgatgctatt      3240
     aatataaatc gtttagaagt gtcagactgg ttttataccg ttcagtcgca agatgataaa      3300
     ctaaaaaata tcattgaaca attgaaaagt ggtaccgcga acattaattt aacaaatgat      3360
     tttgtaatag taaatgctag actgtatcgt aaaacgctga acggaagtcg tcttgtcgtt      3420
     ccaggaccgg ctaggtggaa aatagttcaa atgcatcacg atgaaatagg tcacgtcggt      3480
     ttgaagcgta caatggattt aattaaaaaa gatttttggt tccctaaaat gacaaaattt      3540
     attcgaaaat atgtaacagc ttgcttacat tgtgcgtacg gtaagggtga acacggaaag      3600
     aaagaaggca tgttgcatcc tattcctaaa ccaaatgaac cttttagagt aatccacgtt      3660
     gatcatttag gcccgttttg taggacaaaa aaaggttacc aatatatgtt agttataacg      3720
     gatgcattta cgaaatttgt cattgcggag ccaactcgaa ctgtaaattc ggtcgaaacg      3780
     gtcaaagcac ttaaaaaaat gttcgcttta tttggttatc cggatagagt cgtaactgat      3840
     cacggtaaag ctttcacgag tagaaatttt aaaaagtttg ttactgacaa acaatttaag      3900
     catacgttaa ccgcgattgc ctgtccgcga gcaaacgggc aagtcgagcg caccaataga      3960
     acaatcctta atgctttgcg cgcgtcagat cctagtgaag ccgctaataa ctggccaaat      4020
     tgcctcccag atatcatctg gggcataaac aatactttaa atgataccac gggtttcaag      4080
     ccttatgatt taatgttttc acgcagtggt aagtccaggt gcgacgtatc ggtctcagat      4140
     agggaacaag agccgataca ggctaggcga actaaagcaa gacaacgtat agtaaacgct      4200
     agtgcgagaa tgaaacgtaa ctttgataaa cgtcgtaaaa attgtcatgt gtaccgaaag      4260
     ggtgacttag ttctctggaa gcaagctcct accagtagcg ctgctagggt taattcaaag      4320
     ttagacgaca tctattcagg gccctatatc gtgactagag ttgttggcaa tgacagatat      4380
     aggattagaa gtatcaaggg gttaagaggg tataaaaatt tcgtagggtt agtgtccgcc      4440
     gattctataa ggccataccg cagtgtagct cctatatctg acagtgccag cagttctgat      4500
     gaccaattag acacagaaga tctaatcgat ttacttgaaa gttaaccata ttattgtgtt      4560
     cccattgcgg gagcaattat tacaggatgg ccgat                                 4595
//
ID   Gypsy-1_HMM-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   CAEZ01010720;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HMM_;
KW   Gypsy-1_HMM-I; Gypsy-1_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01010720; Positions    6167    5905.
XX
SQ   Sequence 263 BP; 65 A; 58 C; 58 G; 82 T; 0 other;
     tgtaacgtta agccgcttat gtcagccata gccatgccag ccagccagtc atgcctgcca        60
     tagagccgag ccagcctatg ccgacattga cagttgacgt tttcattgtc cggagagtgg       120
     ggacaagtgt ttaaattagc cgtgcaacgc atttgaagat tattctagta ttgtgtacgc       180
     ttgtaagccg aacctctgtt aaagcttata acgaaatata tagtgttgat tcatcgctgt       240
     gtatttattt cccttctgtt tca                                               263
//
ID   Gypsy-1_LH-I repbase;    DNA;    INV; 4690 BP.
XX
AC   ADOQ01001207;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_LH_;
KW   Gypsy-1_LH-LTR; Gypsy-1_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4690
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001207; Positions   10714   15403.
XX
CC   Positions [3421-3732] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1187..2974
FT                 /product="Gypsy-1_LH-I_1p"
FT                 /translation="MGSLSNSYERVISVNGHRIKGLIDTGSGCTLLRASIA
FT                 EKYSMAVSSGSSVVLRGFVGQTTTSNRSTICDIQIMEALARVNAILVPDEY
FT                 LIYDIIVGRDFIEQEHVVIIKRGSELLFKQLPAIGDDFKSIIDINFLNATS
FT                 ECTIHIGAIPDDARQQCIKLIREYGDCVSSSMNNLGRTSTSSMSIRCTTDI
FT                 PVIYRPYRLAESEKRVLRNMVNELLDCNIIRKSKSPYSSPVVLVKKGSGEY
FT                 RMCVDFHKLNAITIKDKHSLPLIDDQIDRLGGNSYFTGLDLASGYYQVPMA
FT                 ADSIEKTAFVTPECHYKFLCMPFGLTNAPVVFQRLMDQVLGDLRNSVAFLY
FT                 LDDVIIPSKTVEEGMSRLRQVLDVFRTHHLTLKLGKCSFFSQTLEYLGREI
FT                 SEQGVRPGQRKIEAITHMEAPRSVKQVRQFLGLASYFRRFIANFATIAEPI
FT                 TRLTKKNEPWSWGEDQSQAFFTIKDKLTSRPVLTIFDPNKPTEVHTDASAV
FT                 GVGAVLLQVVDGKRQAVAYFSKQMTADQRCYHSYELETMAVVLALRYFRVY
FT                 VLGIHFKVVTDCNALRATFAKRDLLPRIGRWWLEVQEYTFDVEYRAGPK"
XX
SQ   Sequence 4690 BP; 1397 A; 927 C; 1209 G; 1157 T; 0 other;
     ggcgagacgg agaggagagg actgttgata aagaagtcgg tagacagttt ttagaaacgg        60
     tcacgttgtc acgtagttag tggacgttaa gctgtgttct tttaaggaaa taaatacttt       120
     ttgttatacg gaaagcaccc tttttcttac aaatcagaag tgggatagac gcgggccgta       180
     cagcactcgg aaatcttgtg cacgaaatta caggcaccaa caatgggacg ccatacgtcg       240
     cgtcgcgact cgaggaaaaa gtcgtcgaaa tcaaaaaggc gtcattcgtc ttcttcgtca       300
     caaacggata acgagaggcg aaaggagacg cgcttcgaaa gactagagca tggtggagag       360
     tttggatcga cgatcacaag ggcaaggttc atgtatccat cgaggagatg aattaatgat       420
     tcccccgttt gatccagcaa aggacgacat ggtgatcgaa aagtggatcc gacacgtgga       480
     tgaactatcc atacaatacg gttgggatga tcgagcgatc atgagattga ttccaggcag       540
     atttaagggc cacgtccgcc aatggtatga tacgcagcct cagttagcta taacctggga       600
     ggatacaaaa aaagaactaa cgcaactgtt tcgtaagtcg gtccctttca gtaaattatt       660
     caaggaagct gcattatatg agagcagtcc cgggcaatca ttaggtgatt actgttttca       720
     aaaattaaac aaattgcgga agctagatat tgttataccg gataagtatc tcgtggatgc       780
     tgtgattggt ggaataacgg atacgaatgt cgcgcgaacg gtacggtcgg cacaattaga       840
     taatgcaaac gctttgtacg catatatgac gactctcggt gacgtgccgt cgaaaggcga       900
     acgaagtagg gtcgcatcta catcgaatca cgggcgcgat tggaaaggta aacggcctaa       960
     acgtgatagt cagtcgccgg tcgtaagaat cgagaactct acatcaaccg gttagttagg      1020
     ggacgataat aaaaatcagg ggtcaatcaa atgctttaat tgcgggaagg cggggcattt      1080
     tgctaaaaaa tgttgcaagc cgcgcgctaa atgcggacag tgccaacgga aagggcatac      1140
     tactgtcacg tgcccgcaag gcaagaacgt aaatgttatt aagtacatgg gatctctgtc      1200
     aaattcatac gagcgtgtga tatcggttaa tggtcataga attaaaggat tgatcgatac      1260
     cggaagcgga tgtacgctac tacgcgcttc aatcgctgaa aagtacagca tggctgtctc      1320
     atcgggatca agcgtagtat tacgagggtt tgtcggacag actacgacta gcaatcggtc      1380
     gaccatttgt gatatccaaa taatggaggc actagcgcgt gttaatgcaa ttcttgtacc      1440
     ggatgaatat cttatatacg atattatcgt tggtcgcgat tttattgaac aggaacacgt      1500
     agtgataatt aaacgtggta gcgagctgtt gtttaaacaa ttacccgcaa tcggcgatga      1560
     ttttaaaagc ataatcgata tcaatttttt gaacgcgaca tcagaatgca caatacatat      1620
     cggcgcgata cctgacgatg ctcgacagca atgtattaag ctcattcggg aatatggcga      1680
     ttgtgtttca tcgtcaatga ataacttagg taggacaagc acttcatcga tgagtatacg      1740
     ttgtacaacg gatataccgg taatctatcg tccctatcga ttagccgaat ctgagaagcg      1800
     ggtactcaga aacatggtaa acgagttgct tgattgtaac attattagaa agtcgaagtc      1860
     gccatactcg agtcctgtgg tacttgtgaa aaaaggtagc ggcgaatacc gcatgtgcgt      1920
     tgactttcat aaacttaacg cgatcacaat caaggataaa cattccctgc cgttaatcga      1980
     cgatcagata gatcggcttg gtggtaatag ttattttaca ggattagatt tggcgtcggg      2040
     atactaccaa gtaccgatgg cggccgactc tatcgaaaaa actgcatttg tgacgccgga      2100
     gtgtcactat aaatttttat gtatgccatt cgggttgaca aatgcaccgg tcgtttttca      2160
     aaggttaatg gaccaggtgc taggcgactt aaggaactca gtagcttttc tatatctgga      2220
     tgacgtcatt ataccttcca agacggtaga agagggtatg agtcgattac gtcaggtact      2280
     ggacgtgttc cgtacgcacc atttaactct caagctgggg aagtgctctt tcttttcaca      2340
     gactctggaa tatttaggta gagagataag cgaacaaggg gttcgaccgg gacaacgtaa      2400
     gattgaggct atcacgcaca tggaggctcc caggtctgtt aagcaagtgc gacagttttt      2460
     aggactcgcc agctattttc gacgttttat tgcaaatttc gcaacaatag ccgagcccat      2520
     tacaaggctt actaagaaaa atgaaccttg gtcgtgggga gaagaccaaa gtcaggcgtt      2580
     ctttacaatt aaagataaac tcacgagtcg accggtgtta actatttttg atccaaacaa      2640
     accaaccgaa gttcatacgg acgccagcgc ggttggcgta ggtgctgttt tgctacaggt      2700
     agtcgatgga aaacgacaag cggttgctta ttttagtaag caaatgacag cagatcaaag      2760
     atgttatcat tcctacgagt tggagacgat ggcggtcgtg ctagccttaa gatattttag      2820
     agtgtatgtg ctaggaatac acttcaaggt cgtaacggac tgcaatgcgt tacgtgcaac      2880
     ctttgcaaaa cgagatctgt tgccgagaat tggccgatgg tggttagaag tgcaggaata      2940
     tacatttgat gtcgaatacc gggctgggcc aaaatgaaac acgcagatgc actcagtcgc      3000
     aatcccattc tggtagtatt agaagtcaca cagatagaca taacggaagg cgactggata      3060
     ctcgccgcac agttgcagga tgagcaattg gtccgaatcc gcacgattct gttgggtgga      3120
     aaaccaacac atgaaaccaa gcaccacttt gatgagtacc tagtacaaaa agggaaagta      3180
     tatcgacggt tgaataacaa taataaggct tgggtagtcc cgcgtgatgc gcgcctacaa      3240
     atatgtaggc tatgtcatga tgacgctggc catttaggag cggagaagac gttggagcgt      3300
     gtgcagagaa attactggtt cgctggaatg aggcgcttta taatgaaata tattcaggcc      3360
     tgtctacatt gcgcacatta taaaaacccc gctgggaaaa aacagtgtaa actgaatgtt      3420
     atcgagaagg tgccaatacc gtttcatacg gtacatattg accatgtagg cccctttgaa      3480
     actagccgaa aacggaacaa attccttttc gttattgttg atgcctttac caagtttacc      3540
     ataatcgagg cggtaaagag tcagaaggcg aactatgtag tagggatctt aactgaactg      3600
     atatacttgt ttggagtacc gaccaggatt attagcgata gaggaacggc gttcacgttc      3660
     ccagacgttc cgggcatttt gcaatactta tggcatcaag catgtgttga atgccgttgc      3720
     caccccacga gctaacgggc agtgtgagcg ctataacaaa actattgtgc aagcgctagc      3780
     aaccactgcc gcaggacgag actcaaatga ctgggactcg gccgtaaaac aaattcagag      3840
     tgctcttaac acgatgcata ataagagcat aaacaccacg ccgatgaagg cacttatcgg      3900
     atgtgagatg tcaggcgcaa ccaacgcccg acttctgtcg gaaatccagg atgttgttca      3960
     tcgactggat ttgcaagaat tgcgagccgg catcaagacg catatcgatc gaaagcaacg      4020
     agagcagaag gagcgatatg atcgattacg ccgtgatgcg gtgaaatata cgaaaggtga      4080
     actggtacta atgagaatca cgagcgatcc ggcaacaggc agtagcaaga agctacaccc      4140
     gaaattcaaa ggtccttttc gggtccggaa agtgctagtt aatgatcgtt atgaagttga      4200
     ggatctgaga gagggttata gacgaaggcg tacggttgca gccgcggata atataaaacc      4260
     ttgggttacg gttcagagcc cagaagtgaa tcaagatttc acagtagagg ctgacgacaa      4320
     tgattgggaa aacctttggt tgttgccaga gatgatggaa tatcttcggt tgtcgccgga      4380
     gatattcaga aacttcttgg ttgttgccag aagtactagg aaactcggtt gttgccgaat      4440
     atattagaaa actcccggtt gtcgccggag agaactgaaa aactcgcggt tgttgccgga      4500
     gattcgaagg agctcgtgtt gttactgtag acatccttga gaaagctggt tgtgattgcc      4560
     gaggaggaac caagaaaggt cgtcgcctct acagtaatag ccgctctatc tgtgattata      4620
     cgctgtggcg taactataag actttcgact catgaaggcc tgaggacagg ctgcgttcag      4680
     gaaggccgaa                                                             4690
//
ID   Gypsy-1_LH-LTR repbase;    DNA;    INV; 131 BP.
XX
AC   ADOQ01001207;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_LH_;
KW   Gypsy-1_LH-I; Gypsy-1_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-131
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01001207; Positions   10583   10713.
XX
SQ   Sequence 131 BP; 39 A; 34 C; 35 G; 23 T; 0 other;
     tgtaagcaaa tgtaaaaata agacgccaaa aattcgaagc ggccgccggc tgctgccagg        60
     agcacctata ccgtccaatc atgacgcaca cgagggcacc aatagggaac gtgtttgtcg       120
     ctggtgtcgc a                                                            131
//
ID   Gypsy-1_LMi-I repbase;    DNA;    INV; 4292 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_LMi-I;
KW   Gypsy-1_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4292
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3361-3361 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3276-3752] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..4292
FT                 /product="Gypsy-1_LMi-I_1p"
FT                 /translation="MPATVEELLQAFLQQQKVLTDHVLQLPELFANTIKAI
FT                 FNAPQFDRRQQLSIPSFQPYDDAAEDWADYEKRLRQHFAAFGVVDTNLCKS
FT                 LFLSWLSPRLYQLLSQLAPLQEPASLSFDEMCTLLNSFYKKQTHVVASRVA
FT                 FYQCKKLSNQSYRAWATQLQGLSRKCNFVTKIHQESYADQMVRDAILRSAP
FT                 DKEVRQKALQLNDPTLAEVLSIAESFEITRAAGAQLDSWGDVGEVALDRAV
FT                 AAAAHSEASDDVAAIYRPSQQKQNKSKMVFQRKPSPNALPSCPKCFTQHSR
FT                 DDCPQRWAQCHKCKKRGHISSVCRSKQVQAINDMESDAGSVMFVNSTYSSN
FT                 NKLFVSVTVLGKDIQMQVDTGSAATIITSHTYVKLGAPPLSPVSRNLRTYT
FT                 HQQLALKGQFEVPVTYKHVTRTLTLFVVDKAATTDLFGYDAFCAFGFSVDD
FT                 TINMVSDIVPFDRIEALSAEFSDLFSTGLGRAVAFTARISLKDGSRPRFFR
FT                 ARPLPVAFRDSVKQELDRLTTAGVLLPITSSEWASPLVVVLKPNGSLRICG
FT                 DFKNAVNSQSIVDTYPMPRPEELFAKLAGGQYFSKIDLSEAYHQLPLDERS
FT                 RQFLVLNTPFGLYQYQRLPFGVSSAPAIFQRFLEQLLAPVPGCINYQDDIV
FT                 VTGASTDEHLRNLRQVFTVLQQAGLKCNFHKSKFFQPSIAYLGFRLSREGI
FT                 SPLKDHIAAIESLPRPTSVKDLQAFLGKIAYYHKFIPSVAEISHPLNCLLK
FT                 KNVPFVWSDACEKAFQTLKSHLQKSPCLATFSPGLPLILAADASQHGIGAV
FT                 LSHKFPDGTERPIAYVSKTLNASQAKYSQIEKEALSIVYALKKFSVFLYGT
FT                 RFHLITDHKPLVSLFHPSVSLPDKAAHRLQRWALFLSRFNYEIHFRPTTQH
FT                 ANADALSRLPMGPDPVFDADELLCFHVDEAAQAAVDGFPIDGHRIAEATAA
FT                 DPVLRQVVHHIEHGWPERPSGKASDPLRNYYHLRLRLSTLRGVVLLATDDV
FT                 TPRVVVPLALRTDVLNLLHQGHWGTSRTKNLARRHVYWPGIDADIARMVAA
FT                 CSPCATNAPAPKSSLSPWPTPEQPWERIHIDFAGPFLHSYWLLVIDAYSNF
FT                 PFVFKCSAPTTASTLSALDKIFALEGLPKTIVSDNGTQFTSSDFAQFCRRR
FT                 GISHVTAPPFHPQSNGEVERLVRTFKTQMKKHLASSSTEESLLSFLASYRF
FT                 TPTGKQSPAEMLHGRQPRTLLHLLLPSKEQSTNTNQGRYRKGASVWARGYG
FT                 RHPKWIKGRITAQRGNRMYEVSTAGGDVARHVDQLRPRMTTIPSDNDDEKM
FT                 EIDYEVNLPESVKKDDTQCNTDLTLPFLSEVCNKNSDSGPMSPIITKKNVI
FT                 PIPKTPDSPIMTRKYKPGHYKPYGRAPTRTFQREDDMMDIGHVKMFTKKGD
FT                 V"
XX
SQ   Sequence 4292 BP; 1142 A; 1128 C; 907 G; 1115 T; 0 other;
     taaaattggc gacgagaagg ggatatatca aaacaacgtg ttcaatcatg cctgccaccg        60
     tcgaagaact tctacaagca tttctgcaac agcaaaaagt actcaccgat catgtcctgc       120
     aacttccaga gctcttcgca aacaccatca aggcgatctt caacgcacca cagttcgata       180
     ggaggcaaca gctttcaatt ccgagtttcc agccatatga cgatgccgca gaagactggg       240
     ccgactacga gaaacgacta cgtcaacact tcgcagcatt cggcgttgtt gacaccaacc       300
     tatgtaagtc tctttttctc tcttggcttt cgccccgtct ttatcagttg ctttcacaac       360
     tggccccact tcaggaaccg gcatcgttgt cattcgacga aatgtgtaca cttctaaatt       420
     ctttttataa gaaacaaacg cacgtcgttg cctctagggt agccttctac cagtgcaaaa       480
     aactttcaaa tcagtcatac cgagcttggg ccacacagct gcaagggctc agcagaaagt       540
     gtaattttgt gacgaaaatc catcaggaat cgtacgccga tcaaatggta cgtgacgcta       600
     ttctccgctc ggcccctgac aaagaggttc gacaaaaagc acttcaatta aatgacccta       660
     ccctggcaga ggtgttgtca atcgcagaat catttgaaat tactcgcgcc gcgggcgctc       720
     agctggattc gtggggtgac gtaggagagg ttgcgttaga tagggccgtt gctgccgccg       780
     ctcacagcga agcaagtgac gacgttgctg ctatataccg cccctctcag cagaaacaaa       840
     acaaaagcaa gatggttttt cagagaaaac cgtcaccaaa tgctctgccc tcttgtccga       900
     aatgtttcac gcagcactcg cgtgacgact gccctcaaag atgggcacaa tgccacaagt       960
     gcaaaaaacg tggtcacatc tcatccgtat gtcgttcaaa acaagttcaa gcaatcaatg      1020
     atatggaatc tgacgctggt tcagtcatgt ttgtcaactc cacttattcc tcaaacaata      1080
     aactttttgt ctctgttact gtcctaggaa aggatattca aatgcaagtt gacaccggct      1140
     ccgccgcgac tattattact tctcacactt acgttaagct aggggcgccc cccttatcac      1200
     ctgtttcgcg caacttgcgc acttataccc atcaacaact ggctctcaaa ggccaatttg      1260
     aagtaccggt cacatataaa catgtgacac gcacgctcac tcttttcgtt gtagacaaag      1320
     cagctacgac agacttgttt ggctacgacg cattttgcgc ttttggattt tctgtagatg      1380
     acactataaa tatggtctcg gacattgttc cgtttgacag aatagaggct ttatctgccg      1440
     aattctctga tcttttctcc acaggcttag gtcgtgctgt tgccttcaca gcccgcatat      1500
     cgcttaaaga tggttctcgc ccgcgatttt ttcgcgcgcg ccctcttcca gttgcatttc      1560
     gcgattctgt taaacaagaa ctcgatcgcc ttacaactgc gggtgttctt cttcctatca      1620
     cttcgagtga atgggcttct cctttggtag tggttctcaa gcctaacgga tcccttcgca      1680
     tttgcggcga ctttaaaaac gccgtaaatt cacaaagtat cgttgacacg tatcccatgc      1740
     cgcggccaga ggaactcttt gccaaattag caggcggaca atatttttca aaaattgatt      1800
     tgtctgaagc ataccatcaa ttgcctcttg atgagcgatc tcgtcaattt cttgtactca      1860
     acacgccctt tggtctttat caataccaaa ggttgccgtt tggcgtttcc agcgcgccag      1920
     ctatttttca aagatttttg gaacaacttc ttgcgccggt accgggatgc attaactatc      1980
     aggatgatat tgtggtcaca ggggcatcca cagatgaaca tctcaggaac cttcgacaag      2040
     tgtttactgt tttgcaacaa gcggggttaa aatgtaactt tcacaagtcc aaattttttc      2100
     aaccctccat tgcatacttg ggctttcgtc tctcacgtga gggtatcagt cctttaaagg      2160
     atcacattgc tgcaattgag tctcttcctc gacctacgtc cgtgaaggac ttacaagcct      2220
     tcctaggtaa aatagcctat tatcacaagt tcataccgtc tgtagcggaa atatcacatc      2280
     ctttaaattg tcttttgaag aagaatgtgc cttttgtttg gtctgacgca tgcgaaaagg      2340
     cttttcaaac actcaaatct catttgcaaa aatcaccttg cttagcaacg ttcagtccag      2400
     ggctgccttt aatacttgcg gctgatgcgt cacaacatgg cattggggct gtactctctc      2460
     ataaatttcc ggacggcaca gagcgaccaa ttgcttacgt atccaagact ctcaatgctt      2520
     cacaagcaaa gtactcccag attgaaaagg aagctttatc catcgtttat gctttaaaaa      2580
     agtttagcgt ctttctatat ggcactaggt tccaccttat cacagaccac aagccattgg      2640
     tctcactttt tcatccgtcg gtatctcttc ctgacaaagc agcacacaga ttgcaacgtt      2700
     gggctttatt cctgtctaga ttcaattacg agattcattt tcggcccacg acacagcatg      2760
     cgaatgcgga tgctctctcc cgtcttccta tgggtcctga tcccgttttt gatgccgatg      2820
     aattgctctg tttccacgtg gatgaagctg ctcaggcggc ggtggacgga tttccgatcg      2880
     acggacatcg catcgcggaa gccacagctg ctgatcccgt cctccgccag gttgtccacc      2940
     acatcgagca tggatggcca gaaagaccgt caggaaaagc atcggatccg ctccgaaact      3000
     actatcatct tcgtctgcgt ctgtccacac ttcgtggggt ggtcctgctg gccaccgatg      3060
     acgtcacacc aagagtcgtt gttcctttgg ctcttcgcac tgatgtcctg aatctgctac      3120
     atcaaggcca ctggggtact tccagaacaa aaaatctggc ccgccgtcat gtgtactggc      3180
     cgggaataga tgctgacatt gcgcgcatgg tggctgcctg cagcccgtgc gccacaaatg      3240
     ctccggcacc caaatcttcg ctctcgccgt ggcccacacc tgaacaacca tgggaaagaa      3300
     ttcatataga ttttgctggc cctttccttc attcctattg gctcctggtc atagacgcgt      3360
     actcaaattt tccatttgtc tttaaatgtt cggcgcctac tacggcctcc accctttcgg      3420
     ccctcgacaa aatctttgcg cttgaaggcc tcccaaaaac catcgtgtcc gataacggta      3480
     cacagtttac ctcttctgat tttgcacaat tctgcagacg cagaggcatc tcccatgtca      3540
     ctgcaccgcc ttttcacccc caatcaaacg gggaggtgga aaggctggtg cgaacattta      3600
     aaacgcaaat gaaaaaacat ctagcatcat cctccacgga ggaatcactc ctcagctttt      3660
     tagcatcata cagattcaca ccaacgggta aacagagccc tgcggaaatg ctgcatggca      3720
     gacaaccccg gacattactg catctcctat taccctcaaa ggaacagtcc accaacacaa      3780
     atcagggacg atatagaaag ggcgcctctg tttgggcacg aggctatgga cgtcatccaa      3840
     agtggataaa aggacgtatc actgctcaaa gagggaaccg tatgtacgag gttagcacag      3900
     ccggaggtga cgtcgcaaga catgtggacc agctccgtcc taggatgact acgataccct      3960
     cggataacga cgacgaaaaa atggagattg actatgaagt gaacttaccc gaaagtgtca      4020
     aaaaagatga tacacagtgt aatacggacc taactttacc gttcttgagt gaagtgtgca      4080
     ataaaaatag tgacagtgga cctatgtctc ctataataac aaaaaagaat gtgataccta      4140
     taccgaaaac accggactcg cccataatga caagaaagta caaacctgga cattacaaac      4200
     cttatggacg tgcacctacc cgaacatttc aacgcgaaga cgacatgatg gacattgggc      4260
     atgtgaaaat gtttaccaaa aaaggggacg ta                                    4292
//
ID   Gypsy-1_LMi-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_LMi-I;
KW   Gypsy-1_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-281
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3362-3362 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 61 C; 71 G; 88 T; 0 other;
     tgtagtaaat aataaattcg tattgtccgc tacgacagtt ggcgctgtcg gagatcaggt        60
     gatctcgcca gcgccacctg ccgtggtgct gcggcagtgc gcggcagcac gccggctgct       120
     cagagtttgt ttgcttttca taaggtgcgc ctcggcgctt caattgcatt atacgaacag       180
     tgtcttttgt tatcggtgac ttatgtcacg tgtgtgtact taccgtgtaa atgttcaatt       240
     atgaaataca agattcttta agcatattct acgagtgttc a                           281
//
ID   Gypsy-1_MeUr-I repbase;    DNA;    INV; 4883 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4883
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3037-3037 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..4869
FT                 /product="Gypsy-1_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPVVPQSEDGVRTRRQTAVDATRMESPGRDRAGREVT
FT                 VGPAATPTETSTSTPTLAASMPATSSGFDMASLLTAMEAMMKSQREEIMKS
FT                 QREEIMKSQREAMESQREAMESQREAIESIQVGLGAIDAKMDGFQGALNIV
FT                 KEDVEWVKMRTTEHDSTLKAHDASINALDASIKAHDASINAHEKKFEDLEN
FT                 KLQKVKALGTVTPLTVGAPKFKVPSFDGTTSWTAFRHQFEVVAKGNVWEDE
FT                 QSLAALTLALRGEALLVLENIPADRRTLESLFKALEARYGDKHLEHVYRAQ
FT                 LKDRVQKSSESLQQWATEIERLVRRAYASSPTPVDDKVLEAFVSGIRDPEV
FT                 RATVRLGHHTTTEAALAHALEVEAVRGDYKNYKVREVVATIQPRTGPICYG
FT                 CGERGHIRINCRTQKRTRTVSTATQADTQESLKDSRAVGRAPAGFRRAPTL
FT                 QVSQACDGNSLVTVGQINGKSCRFTIDTGASKCIVRPELLKRTIMWENTRP
FT                 FYNLQTATGQPVTVLGVTEVTLKLGDNIYMQPVLVANITDDCIIGLDFLRT
FT                 HQCLVDVARGVLSFPDQEVFLEGASAMAVHCLRSVKLAPRSETLVSVKFPE
FT                 KMTPNRCVIVEDYGDHTSWITARTLLMTKPDAKVKIINLSSTPIHLSRNTI
FT                 IGRCEPVDSIRKIQEGTGKTESTDHITSLLEAMKQNLTTEEYTEATRLLKN
FT                 YKDIFTAGDSNLGRTNLVTHPIDTGATVPIKQRPRRVPLAKEKEVSEMIQD
FT                 MVRSKVIEPSTSPWCSPVVLVKKKDGSTRFCVDYRMLNDVTKKDSYPLPRI
FT                 DDTLDMLGGMKWFSTIDLKSGYWQVELRPEDKEKTAFTTGNGHGLWQFCVM
FT                 PFGLCNAPATFERLMERVLVGLLGDACLVYLDDVIVMGRNFKEHQRNLEKV
FT                 FKRFREANLKLNPKKCEFFKKEVAFLGHVISDEGVRTDPDKIKAVQEWPTP
FT                 KNKTDVRAFLGLCAYYRRFVKNFSEIARPLHRLTEDKRSFSWDSDCELAFV
FT                 RLKELLCSAPILGYPRREGRFIVDTDASNTGIGGVLSQDQDGKQVVIAYFS
FT                 KSLSKPERNYCVTRRELLAVVKSLQHFNKYLLGREFTIRTDHAALRWLLQF
FT                 KNPEGQVARWIELLQEFNFVIEHRNGRVHSNADALSRRPCSEDCRHCLKHE
FT                 SKEVKDEVKVIRTQELDESWSKEQISQAQKEDKDLNLIMQWKIRGQRPLWS
FT                 DISAASAITKAYWAQWDSLILEGEVLYRRWESPNGKXQTLQMVIPRSKVAT
FT                 LLRLVHDGTSGGHLGVKKTLVKLRERFYWVRCREDVEDWCRRCAACASVKG
FT                 PRTRSKGKLQLYNVGAPWERIAIDVAGPFPRTEDGNRFIVVVQDYFSKWPE
FT                 VFATPNQEAKTVAKKLVDEVVCRFGVPLELHSDQGRNFESTLFQEMCTLLG
FT                 INKTRTTPAHPQSDGMVERFNQTLENHLAKVVEDHQRDWDRYIPLFLMSYR
FT                 SAVHESTGFTPAKVNFGREMRLPLDLLTGTPPDAPKLTVEYVADIQKKLDE
FT                 THELVREHSLKTSERVKTRYDRDARAHGFKEGDFVWLHNPLRRKGKSPKLQ
FT                 ARWEGPYTVVTRINDVTYRIKQGDRRKPKIVHIDRLAPCHGANNVRDEHN"
XX
SQ   Sequence 4883 BP; 1450 A; 1108 C; 1317 G; 1006 T; 2 other;
     attggtgaca gaagcggaat gcctgttgta ccgcagagtg aagacggggt acgtacgcga        60
     cggcagacag cagtggatgc tacgcgtatg gagtcgcctg gacgtgaccg cgccggaaga       120
     gaggtcaccg ttggacctgc ggctacgccc actgaaacca gcacatcaac accgacgctc       180
     gctgcatcaa tgccggctac ttcgagtgga ttcgatatgg cctccttatt aacagccatg       240
     gaagccatga tgaagagcca gcgcgaagaa ataatgaaga gccagcgcga agaaataatg       300
     aagagccagc gcgaagcgat ggagagccag cgsgaagcga tggagagcca gcgggaagcg       360
     atagaatcta tacaggtggg cctgggagcg atcgatgcga agatggatgg ctttcaggga       420
     gccctaaata tcgtaaaaga agacgtggaa tgggtgaaga tgcgaacgac cgaacatgat       480
     tcaactctca aagcccacga cgcgtcgata aacgcccttg acgcgtcaat aaaagcccac       540
     gacgcatcga taaacgccca cgaaaagaaa tttgaggact tggaaaacaa gcttcaaaaa       600
     gtcaaggctt tgggcacagt cactccctta actgttggag caccgaagtt taaggtccca       660
     agtttcgacg gcactacctc atggacggcg ttcaggcacc agtttgaggt agtagctaaa       720
     ggaaatgttt gggaggacga gcagtcgctc gcggcgctga ctctagctct ccgaggggaa       780
     gccctactag tcctggagaa tataccagcc gatcgacgca cgttggagtc actgtttaag       840
     gctctggaag ctcgctatgg agacaaacat cttgagcacg tatatcgtgc gcagctcaaa       900
     gaccgcgtcc agaagtcgag cgaaagccta cagcaatggg ctacggaaat tgaacgccta       960
     gtacgccgag cctacgcgtc aagtcctaca ccagtagacg acaaagtgct agaggcattt      1020
     gttagcggca taagggaccc tgaagtgaga gcaacggtgc gcctgggcca tcatacaact      1080
     acagaggccg ctttagcaca tgccctggag gtggaggcgg tccgtggcga ctacaaaaat      1140
     tataaagtgc gcgaagtggt ggcaacgatc caacctcgta ctggacctat ctgctacgga      1200
     tgtggtgaac ggggccatat tagaatcaac tgccgaacac aaaaacgaac gagaacggtg      1260
     tcgacggcta ctcaggccga cacccaggaa tcgttaaagg actcaagggc tgtggggcga      1320
     gcaccagctg gatttcgtcg agcccccacc ttacaagtat cacaggcttg cgatgggaac      1380
     agtcttgtta ctgttggaca gataaatggt aaatcctgcc gctttaccat cgatacagga      1440
     gcatcgaaat gcatcgtgcg accagaactg ttgaagcgaa ccatcatgtg ggaaaataca      1500
     cgtccgttct acaacctaca gacagcgaca ggccagccag tgaccgtcct aggagttaca      1560
     gaagtgacac tgaaactagg agataacatc tacatgcagc ccgttttggt agccaatata      1620
     accgacgact gcatcatcgg actggatttt ctacggacac atcaatgctt ggttgatgtt      1680
     gcgcgaggag ttttgagctt cccggatcaa gaagtctttc tggagggtgc gtctgcaatg      1740
     gcagtgcact gcttaagatc agtgaagcta gcacccagat cagaaacgct agtcagcgtt      1800
     aagtttccag agaagatgac accaaatcga tgtgttatag tggaagacta tggagatcac      1860
     accagttgga tcacggcaag gacattgcta atgaccaaac cagatgccaa ggtgaagatc      1920
     atcaacctca gtagcacacc gatacatctc tcaagaaaca cgattatcgg acgttgtgaa      1980
     cctgttgaca gcattcggaa gatacaagag ggcactggta aaaccgaatc aacggaccat      2040
     atcacctcgt tgctggaagc aatgaagcaa aacttgacta ctgaggaata cacagaagca      2100
     acaagactgt tgaaaaatta taaggacatc ttcaccgcag gagatagcaa cctaggaaga      2160
     acgaatcttg tcactcaccc aattgatact ggtgctaccg taccgatcaa gcagagacca      2220
     agacgtgtac cattggcaaa ggaaaaggaa gtatctgaga tgatccagga tatggtgcgc      2280
     agtaaggtta tagaaccatc gactagtcca tggtgttcac ctgtggtact cgtgaaaaag      2340
     aaagacggca gcaccagatt ctgtgtggac tacaggatgc tgaacgatgt gaccaaaaag      2400
     gatagctacc ctttgccccg gattgacgac acactggaca tgcttggagg catgaaatgg      2460
     ttttcgacga tagacctgaa gagtggttac tggcaggtgg aacttcggcc agaagacaag      2520
     gagaagaccg cttttaccac tggcaatgga catggtctat ggcagttctg cgttatgcct      2580
     ttcggactgt gcaacgctcc tgccactttt gagcgcctca tggagcgagt attggtagga      2640
     cttctaggag atgcatgtct agtgtatctc gatgacgtga tagttatggg acgcaacttc      2700
     aaggaacacc aacgaaatct ggagaaggta ttcaaaagat tccgtgaggc gaacctgaaa      2760
     cttaatccga agaaatgtga gtttttcaag aaagaagtag cattcttggg acacgtcata      2820
     tcggatgaag gtgttcgaac tgatccggat aagataaaag ctgttcaaga atggccgaca      2880
     ccgaagaaca aaacagacgt gagagcgttc ttaggcctgt gtgcctatta ccggcgattt      2940
     gtgaagaact tctccgagat agccaggcca ttgcatcgac tcacggagga taagaggagc      3000
     ttcagttggg attcagattg cgaacttgcg tttgttcgcc ttaaggaact tttatgctcg      3060
     gccccgattc tgggttaccc cagaagagaa ggacgcttta tagtggacac ggatgctagc      3120
     aataccggaa ttggaggggt attgtcgcag gatcaagacg gtaaacaagt ggttatcgca      3180
     tacttcagca agtccttatc gaagcctgaa aggaattatt gtgtcactcg acgtgaactt      3240
     ctagctgtag tgaagagtct tcagcacttc aacaagtact tgctgggtcg cgagttcacg      3300
     atccgcaccg accatgccgc tttgagatgg ctgcttcaat tcaagaaccc tgaaggccag      3360
     gttgcgagat ggattgaact gcttcaagag ttcaactttg taatagaaca tcgcaacgga      3420
     agagttcact caaatgcaga cgctctatca cgacggccat gctccgaaga ttgtcgacat      3480
     tgcttgaagc atgaatcgaa agaagtgaaa gacgaggtta aggtcataag gacacaagag      3540
     ctggatgagt cttggagtaa ggaacaaata agtcaagctc agaaggaaga caaagacctc      3600
     aacctcatca tgcagtggaa aattagggga caaagaccac tttggagtga catctcagca      3660
     gcaagtgcaa tcaccaaagc ttactgggct caatgggaca gtctcatctt agagggtgaa      3720
     gtgttataca gaagatggga gtcaccgaac gggaaggasc aaactctaca gatggttatc      3780
     cccaggagta aggtggccac gttactgcga ctggtgcacg acggtacatc cggtggacac      3840
     ctcggcgtca agaaaaccct tgtgaaatta cgggagcgtt tctattgggt gcgatgccgg      3900
     gaagacgtcg aagattggtg ccggagatgt gcggcttgtg cgtccgtaaa aggacctcgg      3960
     actagatcca agggaaagct gcagttatac aacgttggag ctccctggga aaggatcgcc      4020
     atagacgtcg ctgggccatt ccccagaact gaagatggaa atcgattcat cgtagtagtt      4080
     caagactact ttagtaaatg gccagaagta tttgcaaccc caaatcaaga ggcgaagaca      4140
     gtggccaaaa agctcgtcga cgaggttgtt tgccgattcg gggtaccgtt ggagttgcac      4200
     agcgatcaag gcaggaactt cgagtccaca ttattccagg agatgtgtac cctcctagga      4260
     attaacaaga cccgtaccac acctgcacat cctcaatcag acggaatggt cgagagattc      4320
     aaccaaacat tggagaatca cttggccaaa gtcgttgagg atcatcagcg agattgggat      4380
     cggtacatac cactattcct catgtcatat cgctctgcag tccatgaatc cactgggttt      4440
     actccggcta aagttaactt cggaagagaa atgcgtctac ctttggatct actgactggt      4500
     actccgcctg atgcccctaa actaactgtt gaatacgtcg cggatataca aaagaaattg      4560
     gacgagacac atgaactcgt acgggaacac agcttgaaaa ccagcgagag agtgaaaacc      4620
     cgttacgatc gcgacgcacg ggcacatggt ttcaaggaag gagacttcgt atggttacac      4680
     aacccactta ggagaaaggg gaagtctccg aaactacaag cacggtggga agggccgtat      4740
     acagtagtca caaggattaa cgacgtgacc taccggatca agcagggaga taggagaaaa      4800
     cccaagatcg tccacataga caggctggca ccgtgtcatg gagcaaacaa tgttcgggac      4860
     gaacataatt aagagggggg cag                                              4883
//
ID   Gypsy-1_MeUr-LTR repbase;    DNA;    INV; 506 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-506
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3054-3054 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 506 BP; 144 A; 104 C; 142 G; 115 T; 1 other;
     tgttacgaag cttctcgaag tcggcaggct tacgaagttt ckagaagggt ggccgaccgt        60
     tacggtgagg caaacaatag aggcaaacaa tagaggcaat aaaagagaaa cccaggtagt       120
     aataaaaact acctgggtca ctccaggcca atctggcccg tatgcctcga gcaaaagggg       180
     cgagattagc atagatgagg gccgaaatgg ggttgtttac ctgacccgct attgttatgt       240
     cgatttccgg gaattcctgt tgttgttgct tacttcaacg aagggcgtgg aaggatctgg       300
     aagcccggaa atcgatataa atagcgggca gggtcggcca caaggcattc ggtctccgga       360
     tacgaagcga agagttctct ccctacgaag cgaatacctg cgatctacga gtgtaactgt       420
     gattgtgaag tgtgtgtgaa gaaaaataaa gtctctgcgg aactattgtg gcatttttac       480
     gagcctacgg atcctgacac gtaaca                                            506
//
ID   Gypsy-1_MoPha-I repbase;    DNA;    INV; 4631 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4631
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1087-1087 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..4594
FT                 /product="Gypsy-1_MoPha-I_1p"
FT                 /note="SAP domain, gag, zinc finger, retropepsin,
FT                 reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MSDPNAFTVTELKEKLKKRGLAVTGAKSDLVARLMEA
FT                 DPAGSWMTERSGCDVDSDGEDVEYENASQRREIDLYRREKELAERELELAR
FT                 REIAMLRAMQRGDPARRVETGPVVGGDVGVSDVSRTPMRMNITTIADLLSE
FT                 FDGIGNNFDTWEKQLRFLRTTYRLEDDHVKVLIGMRLKKKALEWFHSRPEY
FT                 LSLPLEEIIGKLRAMFQHRESRVVLRRKFENRVWKKDESFHEYVHEKIIMG
FT                 NRVPIDQDDLIEHIVDGIPDAALRDQARIQQFTTTDALLSAFERVTLRDRG
FT                 APNHGRREERNGAARGERPRRADGDVRGEDGEKNTRDRRCFNCGARDHLSA
FT                 SCPMKERGTKCFECRDYGHIASKCPKKIVKPKETAVASVSCMPRKKYTKEV
FT                 IVNGQIFVALMDTGSDISIMRASEYALIGSPKLEASRIEFCGVGNYSATTL
FT                 GRFKTEISIDGHSFPIFIYVVSDGVLQHGLLIGTDFFDSVEVNVKRGVISI
FT                 KPICEPVIDNEGRSEILAIDAVQSASEIDVSYIRNVNHKRAVTELIVNYKP
FT                 NKLREVDIKMAIVLKNDEPIYQKARRLSQTEKDIVNAQIEEWERQGIVRPS
FT                 TSDFASPVVLVKKKDSSYRLCVDYRLLNKNIVKDRYPLPLIEDQLDRLQDA
FT                 EVFSTLDLKNGFFHVRMDEASIKYTSFVVPDGQFEFLRVPFGLCNSPSVFQ
FT                 RFINAVFRDLAKRKIVLTYLDDLIVLSNNEDDGLNNLKTVLNVASQAGLAI
FT                 NWKKCSFLQRKVEFLGHVVENGTIRPSELKTRAVMCFPEPQCVRQVQAFLG
FT                 LSGYFRKFIPGYSIVARPLSNLLRAGERFQFGVAEREAFERLKAMLSRRPV
FT                 LSLYRANAETELHTDASKYGYGAILLQRNSEDRLLHPVYYASGKTTPAEEK
FT                 YTSYELEVLAIVRALRRFRVYLLGIPFKIVTDCQSFALTMAKRDLCVRVAR
FT                 WALLLEEFQYVVEHRPGKSMTHVDALSRNPLPSCLIVSECRDGLATRLRKA
FT                 QREDACLAKIFEATERGEISDHIIRGGILYKEIGDDIRMIIPKVMQTQIIR
FT                 KVHEQGHFGVNKTETLVRADYWIPNLRSKVESVVANCVACILAEKKQGKQE
FT                 GFLNPIEKGTVPLDTFHIDHLGPLPSTKKSYXHIFVIVDAFSKFTWLYATK
FT                 STGAAEVVSRLKRQSSIFGNPRRIISDRGSAFTSREFEEYCRTENVQHILT
FT                 TTGIPRSNGQVERVNRTLIPLLTKLSAPKHNEWYKYIDAAQLCLNTTPHRS
FT                 IKTTPFRVLFGVDPRIRDDPNIRELLENEFVVSFDDDREELRRQARENIIK
FT                 IQKENRINFDKRRKASFRYREGDLVAIKRTQQMPGLKLASKYLGPYEIVRV
FT                 LRNDRYNVRKVGEHEGPLQTSSAADHMKSWISGEDDNEVSEIDDSGEDD"
XX
SQ   Sequence 4631 BP; 1363 A; 861 C; 1271 G; 1135 T; 1 other;
     aattgggggc tcagccggga tcggtggaaa ttggcgaaga taaagtgaga aatctgcgaa        60
     ggagaccagc gaggagttgg agcgatcaga gtttcggagc gaagtggtca cgcggcgaga       120
     gagacgtgcg gctgagggcc ttgcgaggca taagaagacg acggctgatt cacggggtgc       180
     acggtgagtt gcaagacggg caacgcatac gtgcggacga cggtgacccc ggtgagttaa       240
     gcgacgacga ggagagcggt tgcgagcggc gcgactgtgc acgcggcgtg tgcgtgacga       300
     ccaagcgaga gacatacggc gcggtaatcg gttgagacga acgataatat aatttgaaat       360
     gtctgatcct aacgctttta cggtgaccga gctaaaggag aaattaaaaa aacgcggatt       420
     ggccgtgacg ggagccaaaa gtgatctcgt tgctcgcttg atggaggctg atcctgcggg       480
     ttcgtggatg accgaacgga gcggttgcga cgtggattcc gatggcgagg atgtcgaata       540
     tgagaacgcg tcgcaacgtc gagagataga tctttataga agagagaagg agctcgctga       600
     acgagagctt gagttggctc gccgagagat cgcgatgtta cgcgcaatgc aacggggaga       660
     tcctgcgcgt cgtgttgaga cgggaccggt ggtcggtggt gacgtcgggg tgtcggacgt       720
     gtcgcgtacg cctatgcgaa tgaacattac aacgatagcg gatttgttga gcgagtttga       780
     cggtattggc aacaatttcg atacgtggga aaagcagcta agatttttgc gtactactta       840
     tcgtttagaa gacgatcacg ttaaagtatt aattggaatg cgactcaaaa agaaagcatt       900
     ggaatggttt cattcgagac cagaatattt aagcttgccg cttgaagaaa tcataggcaa       960
     attacgagcg atgtttcaac accgcgaaag tagagtcgtg ttgcgccgaa aattcgagaa      1020
     ccgcgtatgg aaaaaagacg aaagtttcca cgaatatgtt cacgaaaaaa taattatggg      1080
     caatcgcgtt ccgatcgacc aagatgactt gatcgagcac atcgtggacg gtattccgga      1140
     cgcggcatta cgtgaccagg cgcggataca acaatttaca acgaccgatg cactgctaag      1200
     cgcgttcgag agagtgactc tgagggatcg cggcgcgccg aatcacggcc gacgggagga      1260
     gcggaatgga gcagcgagag gcgaacggcc gcgacgagcc gacggagatg tgagaggcga      1320
     agacggcgag aagaacaccc gtgatcgacg atgttttaat tgtggtgcgc gagatcattt      1380
     gagtgcgagt tgtcccatga aggagagggg cactaaatgc tttgagtgcc gtgactatgg      1440
     gcatatcgcg tcaaaatgcc cgaaaaaaat cgttaagccg aaggagactg cggtcgcgtc      1500
     tgtttcgtgc atgcctcgta aaaaatatac gaaagaagtg atagtgaacg gccaaatttt      1560
     tgtagcatta atggacaccg gtagcgacat ttcgattatg cgtgcgagcg aatacgcgtt      1620
     aattggatcg cctaaattag aagcatcgag aatagaattt tgcggcgtcg gaaattacag      1680
     cgcgacaacg ttaggacggt ttaagacaga aatttcgata gacggacatt ctttccctat      1740
     atttatttat gttgtttcgg acggggtttt acagcacggt ttgttaattg gcaccgattt      1800
     ttttgactcc gtagaagtta atgtaaagcg cggcgtaatt tcaataaaac cgatatgcga      1860
     accggtaatt gacaacgagg gacgatcgga gattcttgcg attgacgcgg tgcagagtgc      1920
     gagtgagata gatgtctcat atatacgaaa cgtaaatcat aagcgagcgg tgacagagtt      1980
     aattgtaaat tataaaccaa ataaattgcg tgaggttgat attaagatgg cgatagtttt      2040
     aaaaaatgac gagccgatat accaaaaggc gagacgttta tcgcaaacgg aaaaagatat      2100
     tgtaaatgcg caaatcgaag aatgggagag acagggcatt gttcgacctt ctacgtccga      2160
     ttttgccagt cccgttgtgt tggtaaaaaa gaaagatagc tcctacagac tctgcgtaga      2220
     ttatagattg ttaaataaaa acatagttaa agatagatat cctctccctc tgatcgaaga      2280
     tcagttggat cggttgcagg acgctgaggt gtttagtaca ctcgatttga agaacggttt      2340
     ttttcacgtt cgaatggacg aagcaagtat aaaatataca tctttcgttg tacctgatgg      2400
     ccagttcgaa tttttaagag taccattcgg tttatgcaac tcgccttccg tctttcaaag      2460
     gtttattaac gcggtcttcc gagatctagc aaaaagaaaa attgtgttga cgtatttaga      2520
     cgatttaatt gtactttcga ataatgaaga tgacgggctg aataatctta aaaccgtttt      2580
     gaatgttgcg agtcaagccg gattagcgat aaattggaaa aaatgtagct tcttacaaag      2640
     aaaagtcgag tttttaggcc atgttgtcga gaatggtaca atccgtccat ctgagctgaa      2700
     gaccagggcc gtcatgtgct tccctgagcc gcaatgtgtg cgtcaggtgc aggcttttct      2760
     cggattgagc ggatattttc gcaaattcat tccgggttat agcattgtgg ctcgtccatt      2820
     gtcgaacttg ttgagagcgg gtgaacggtt tcaatttggt gtagccgaaa gagaagcgtt      2880
     tgagcggtta aaggctatgt tgagtaggcg accggtgtta agtttatatc gagctaatgc      2940
     ggaaaccgaa ttacatactg acgcgtcgaa gtatggttac ggagcgatat tattacaaag      3000
     aaatagcgaa gatcgattat tacaccctgt atattacgcg agcggtaaaa ctactccggc      3060
     ggaagaaaag tatacgagtt atgagctaga agtccttgcg atagtgcgag cgcttagacg      3120
     ttttcgagta tatttgttag gcataccgtt caaaattgta actgattgtc agtcgtttgc      3180
     gttgacaatg gcaaagaggg acttatgcgt gcgagtggcc cgatgggcac tactgttgga      3240
     agaatttcaa tatgtcgtgg agcatcgacc tggcaagagc atgacgcatg tcgacgccct      3300
     gagtcgaaat ccactaccat cttgtttaat agtaagcgaa tgcagagatg gattggcgac      3360
     gcgtttaagg aaggcgcagc gagaggatgc ttgcttggcg aaaattttcg aggcgactga      3420
     acgaggagaa ataagcgacc atataattcg cggaggaatc ttgtacaagg aaataggaga      3480
     cgacatacgg atgatcattc ctaaggtcat gcaaacacaa ataataagga aggtacacga      3540
     acaaggccat tttggcgtca acaagacgga gacgttggtt agagctgatt actggatccc      3600
     gaatttacgt tctaaagtcg aaagcgttgt ggcaaattgt gttgcctgta ttctggcgga      3660
     gaaaaaacaa ggaaaacaag aaggcttctt aaatcctatt gagaagggaa ctgtgccact      3720
     agatacattt catatcgatc atctgggacc cttgccatct accaagaaga gttataanca      3780
     catttttgta atcgttgacg cattttctaa atttacatgg ttatatgcga ccaaatcgac      3840
     aggcgcggct gaggtagtta gtcgtttgaa aaggcaatcg tctatttttg gcaatcccag      3900
     acggataatt tcggatagag gttcagcttt tacgtcgcga gaatttgaag aatattgccg      3960
     gacggagaac gtgcagcata tcttaacaac tacgggaata ccacgatcta acggtcaagt      4020
     tgagcgcgtt aaccgtacct tgataccatt gcttactaaa ctatcagctc caaagcataa      4080
     tgaatggtat aaatatattg acgctgcgca attatgttta aacacaacgc cgcaccgaag      4140
     cattaaaacg acgccttttc gcgtattatt tggagtcgat ccgcgtattc gtgacgatcc      4200
     taatatcagg gaattattag aaaatgaatt tgttgtttca tttgacgatg accgagagga      4260
     acttcgacga caagctcgag aaaatattat taaaattcag aaagaaaata gaattaattt      4320
     tgataaaaga agaaaagcgt cttttcgtta tcgagaggga gaccttgtgg ctatcaaacg      4380
     cacgcaacag atgcctggtc tcaagttagc gtctaagtat cttgggccgt acgaaattgt      4440
     gagagttctg cgcaatgatc gctataatgt gcgcaaggtc ggtgaacatg agggacctct      4500
     ccagacatca tcggcagcag accatatgaa gtcgtggatc agcggtgaag acgacaatga      4560
     agtttcggaa atcgatgaca gcggcgaaga tgactagtat tcgggtcgaa tactcgatca      4620
     ggacggccga g                                                           4631
//
ID   Gypsy-1_MoPha-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-249
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1165-1165 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 249 BP; 71 A; 46 C; 61 G; 71 T; 0 other;
     tgtggggacc aaattttgtg acggcactgg tagtcggatg gtgggaaaat tcggctgtat        60
     gtaagaccgg gagagatgag aaacggagga gagaacagat cgcgccgtcg aagtaataat       120
     acgttttgtt ttgcgtcctt cgctcgtgct aacatctttt ttgaatctcg caacggttcc       180
     gccgagacca aactttttat gtactctgtt atcattaaat aaaattgatt aatatcgcaa       240
     aacactaca                                                               249
//
ID   Gypsy-1_MSe-I repbase;    DNA;    INV; 4289 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_MSe-LTR;
KW   Gypsy-1_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4289
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 879-879 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4289 BP; 1722 A; 456 C; 802 G; 1309 T; 0 other;
     tggtagcaga gcgtggttgc ctgcaaatac aaagaagaaa agaagatatt ttcgcaaata        60
     aagtggaaac gtgctatata tgcaataagc aaaaatggcg tttactaaat gcaatgacgc       120
     agttattcca atattcgacg gatcggatta tagtagctgg aaaatacgta tacttaagtt       180
     tttggagttt aagaaatgta aagaaagctg ccatacgaat caaaaatgat tcggatgatg       240
     ttgcaaagtg ggaagagatg gatatccagg caacgaacta catttatagt gcaataagca       300
     acaagcaact cgaatatata tgcgacttag attccgcatg caaaatattg gcaaaatttg       360
     atgaaatgta cctgcagaaa tcatcggcac tacagattat atgtcgcaac aatgtagaag       420
     caataaaatt atcgaactat tcgcaagtaa gtgtattttt tgacgacttt gagaaatcaa       480
     taaatcagtt aaaacaagcc ggcgcgacgg taagtgaaca agaaaaatta aattatatgt       540
     taaaggcctt acctcgtaat tacagtcata ttggagatct aatagacgtt ttaccagaaa       600
     aagacagaac tgtagattat ttgaaaagta aaattatgtt aaaatcattg gataaagaac       660
     ctgaaaaatg taatgaacca tcacgcgaca actcaaatgt ttttaaagct cacactagta       720
     gttctgcatc acctaataaa aactttaaat gttttacctg tggaaaacct ggccacatgc       780
     aaagagattg tcgacacaga aatgttaaca gtggtagagg aaatggattt attagattta       840
     ataataatcg tggacatcaa cgtggatcat attataattc aagaaatatt agaggaagaa       900
     cttataataa taaatccagt aatgagagtg gtggtaataa tttccttgca actattgaga       960
     ataataatgt ttcaacttca agtaaaatat ataatattga gcagtctggc cacttaactt      1020
     ggttattaga tagtggttgt acagatcata taattaatac tgatgagtac tatcattcat      1080
     gtgaaatatt acaacaacct attaaagtaa aagttggtga tggaagaata ttagaagcta      1140
     caaaggtcgg aaaaatacaa acttatttta tggtctatgg aaaaagtctg aagttgtttt      1200
     gaacaatgtt ttctatgtca aagagatgaa agcaaattta ttgagctatt caaagattac      1260
     agacaatcat aaaattgttt ccaggggacg acaatcaaaa atatataacg tctatggaac      1320
     tattatagct atagcagtga aagaagatag actgtataaa ttaaaaggtt atataaatgc      1380
     aagtacatta catgctaatt tagtgaagaa atcaagtatg acagtgaagg agaaattaca      1440
     taggatgctt ggtcatataa actttaacaa tttgaatact atgtgtacaa gtgaattatt      1500
     gaaaggatta ccaaaggaga ttgaatgtaa gtacatgaaa tgtgctatat gtattgaaaa      1560
     taaaatgcat aacttgccat ttaaaaataa tagaaaacga gcacaggata tattagaaat      1620
     tgtacacaca gatttaaatg ggccacacag aactacaggt tttaatggtg aaaaatattt      1680
     cttaagtttt atagatgact atagtaagtt ggcaaaagtt tattgtattc cgtcaaaaga      1740
     taaagtatat aattgtttaa tgcagtatgt taatgagata caaaatttaa ctgggaaaaa      1800
     tattaaagaa ttgagatgtg ataatggaaa ggaatacatt aataaaagag tgtttgactt      1860
     tgcaagatca aagggaatta tgattaaatc ttgtccgcca tatgtgcatg aattaaatgg      1920
     cacagcagag aggttcaata gatcaataat ggatatgtca agatgtctat tggcagaggc      1980
     aaaagtgcat aaaagatttt ggcctgaagt ggttatggcc gcagcttatt taaagaatag      2040
     aacattaaca aatggcacta tagaaaggaa gacgccttat gagatatttt tcaaacaaag      2100
     gccaagcatt gaaaatttaa ggatatatgg aagtaaagta tttgttagaa caccagagga      2160
     aaagagaaaa tgtaaatggg acaggaaagc cgagcttggc atactaatgg gctatacaga      2220
     tgttggatat agagtattaa taaacaatag aatagttgta gcaagacatt gtgatataat      2280
     tgaagatgat gtaatgtgta ttggtctccg atgataatag agaagagaaa aatgataaaa      2340
     gtaatagcca gccgaataaa ttggaagaga aaattataga agagaagaaa gagactaatg      2400
     cagaagaaaa taatgagaaa attaatgaag atttgaatgc tgaaacaaat gaaagttatg      2460
     atgataataa agtaattgaa acaagaaatc ggcgtaaaat caagccacca actcggtttg      2520
     atgaagaatt tggttattat tgtataactg ttaactattg tgatgctatg attccagata      2580
     attttcagga ggcaataact agcgatgaag caaaagaatg gactgaggct atgaatcgtg      2640
     agatgaacag tttggcaaaa atgagacctg gagacttgta agtaaaccag cagacaaaca      2700
     gcctttagat gtgaaatgga tatacagaaa gaaagccgaa aataaattta aagctaggtt      2760
     agtagtaaga ggttttcaac aaaaagattt tattgatgat atatattcac ccgttgctaa      2820
     aatgcaaact ttaaaattgt tattgtctta ttgttgtcaa aataatctta atatacatca      2880
     gatggatgtt gaaactgctt ttttaaatgg taaaatttta tctgaagttt atgtaaacca      2940
     gccaattggt tatgatgatg gcactgatag agtttataaa ttaaataaaa cattatatgg      3000
     tttaaaagaa agccctcggg cttggtatga atgtgtcaat aagtttttaa ctagtcttgg      3060
     atttcagaga agtaaatatg acttttgttt atattttaaa ttggatacta atgtgagtgt      3120
     atacattttg ttatatgttg atgatttgtt aatatgttgt aaagatgaaa aggtaatgag      3180
     taatattaaa aacaaactgt taagtaaatt tactatgaag gatatgggta aagttaaaga      3240
     atacattgga atacatattg attatgatta taaaaagaat aagaccatga cactgagtca      3300
     ggaatcatat atagaatcat tagctaagcg ttataatata ataaatacaa agttatatac      3360
     tacaccaatg gaagtaaatc ttaaactaga aaactgtaat ataaatgaga atgtaaaata      3420
     tagaaattta attggagcac ttttatatat tagttcaggt acaagaccag atatatcgtt      3480
     cagtgttaat tatttgagta gattccaaaa ttgctataat gagacacatt ttaaatatgc      3540
     tttgcgagta cttaaatatc tttacttaac aaaacatata aaattaattt ataacatgaa      3600
     tataaattct gatatgttag attgttatgt agatgcagat tttgcaggag atattgtcag      3660
     taggaaatca acaacaggat ttgtaattag actgtttggg aatgtaatat tttggaaatc      3720
     aaagaaacaa aattgtgtaa caaagtcatc tacatttgct gaatacattg cgctgtcaga      3780
     agctgttact gaaattaaat ttatagtttg tttaattaat gagatttgtc agaaagattg      3840
     taaacctgta aaaatatatg aagataatat tggagctcaa attattgcta aatacggaaa      3900
     tttcacaaaa attcaaaaca tattgaagtt cattatcatt ttgttcatga aagtgttaaa      3960
     attggtttaa ttgatgttat aaaaattgca tctgatcaaa atatagctga cattttaaca      4020
     aaaccattgg gaagtaataa atttaataaa tttagagata tgttaaagtt gttgtaaaag      4080
     taatttatct ttcagatgga tattatgttg agataaatat tggtttaaat tgtttaatta      4140
     aaagatgata attgtaatat aaaaaaaaaa aagttacaat taatatgtta tactgaaggt      4200
     aatgtttata gagctattgt tttaatttaa aatacttgat atgagtagtg tatgatatga      4260
     tttagttaaa atataaatgt aaggaggca                                        4289
//
ID   Gypsy-1_MSe-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-199
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 870-870 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 199 BP; 52 A; 32 C; 37 G; 78 T; 0 other;
     tgttgaatgg gtacatttat atttgtttag ggtaacattt gtttatatgt aatttaattt        60
     gtttttgtgg caacacgcct ccacttcctt cttcctgtca cgggctgccg gcgagcagcc       120
     acaataatgt agttctttaa gtttatgttt aagatatcaa attaaataac agtgatccgt       180
     catagtggtt ttattaaca                                                    199
//
ID   Gypsy-1_NG-I repbase;    DNA;    INV; 11818 BP.
XX
AC   ADAO01190636;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from parasitoid wasps: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_NG_;
KW   Gypsy-1_NG-LTR; Gypsy-1_NG-I.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-11818
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from parasitoid wasps.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; ADAO01190636; Positions     290   12107.
XX
CC   Positions [7897-8373] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3768..7505
FT                 /product="Gypsy-1_NG-I_4p"
FT                 /translation="MLKRRGKFYADSGADISVIKIEELAPGYPIDTDKIVK
FT                 IQGVTEGTAFTLGQAEIQINGLPCSVQVVKNDFPIENAGIIGWDVIDKHNG
FT                 CVDALSKSLKLGATHLPFEADEKITIPPRVKMAISAPLKNHDVKVGWVPLY
FT                 DLHPDLLFGNFVSENRNGRVHGECINVSDSEITISAPMVELLECEEIANPL
FT                 YQADEDGSAENVATFTASLRRLFGTENPSEKYREVSNHNRELQSNAEKRRA
FT                 RVDKIMSLADLEGCSEAEKNIIREIVDEFAGVFGLEGEPLPATHLLQHKIM
FT                 LKSNRPIRNHRFRFPPAIKEHMIRELAKLREQNIVVPSNSNYSSSLWIVPK
FT                 KPDASGNKRFRLVTDFRGLNEETEGSCHPLPFTSDILEHLATANFITVMDL
FT                 KQGYHQIEMHPDSAHLTAFYAPDGNHGNQLLQFNRMAMGLKEATITFTRAM
FT                 SLAMKGLQGDEVEIYLDDLMVFGGTFDEHNKRLRRVLKRLLEANMTVEPKK
FT                 CQFLKKEAQVLGHIVGGGLIKTDPAKTHAMANYPTPTDAKKLKQALGLFSY
FT                 YRRFIPDFSKIAYPLFKLLQKDIKFQWGKAEKTAFENLRKLMAEEPVLKAP
FT                 VLSEPFIVTTDASDYALGAILSQGKIGVDHPCAYASRCLKGSELRYPTYDK
FT                 ELLAVVFAKEQFKPYLYGRRWTLVTDHEPLKHYHTSKKPDLRFNRLKAALN
FT                 GYDFDVVYRPGIKNSNADALSRNPVLAEGEVNPDLPRYELYELADQQVKEN
FT                 PDEEAGAPPGRVFRARAVKKQNQKAGKKERVSESSSSDASNRGLSKKPRQD
FT                 NALIYERNECVAVRNEFNGYYICRALHDVHQGDEKIAVQWFTETKNLKHVY
FT                 APDYRDAVWFDSILTSASLKRLDRNHYLLGAAERTRIDAILREAIEFIADA
FT                 PAPKPPEISAVAAEFSDSDQSMKSVASALSSSSGFSLLPPELRPVAKYVWP
FT                 SERKTRGSEKTKMTVSRKSRELGNSSSEESIRISPSGKIANVIDEPQIFSF
FT                 PQRVFSRSPSPPQSPQTRVTPEPPVMTKSPLRPTAAEFQMPASTQASQPRD
FT                 SSNAPRAESALAEPPGPKSGSTWPWSGNKTKKKLRVNIEGKDFDGKGGVRI
FT                 ECWELNSSVAPQDKIIPARVENSQQRTRARELSARKDNAMAISKSPVSSEK
FT                 ETAAGNASAPSGKNSSKNGRNESGKKAPETGSLTPAVVSPPKSAACMTHPA
FT                 MIPSPPSSVGPNEDFAGILSKITSKIGRFAPTCENV"
FT   CDS           9468..10799
FT                 /product="Gypsy-1_NG-I_5p"
FT                 /translation="MRKLESFAVVLENNSAKNLANINSLDVEMNIKTTLLQ
FT                 FKADTELINTAILFAVKGLIHPKILAPETIAQAAKSVEDSLSHAKFPLSPG
FT                 DFSVIPIMEISRVAILFSNGYLIYHIAIPLVDVEEFNLFKASPIPTVQSIL
FT                 NSAHTAAYIWPVHTYFAISTSNLTYLPIPAEEVRKLRKLQDTLIVVNPEPV
FT                 REISDSVSCEIKVAAGRKIESPEVCDIRLKRLRESFWLRLHRANTWVYSAR
FT                 ERENIYIQCPKKELVTAQISGAGVLELREGCAAHTASARLVASHIITKQLE
FT                 TLSLGALQFNMSKIWAHVNESSAAAADLKQAIAIGTEHRADNAHGSDLDNL
FT                 KAGESLREITARARDIAYRKKTEFELKDLSGHTGILSWVSWSSLSIVLICV
FT                 VAVWCFMRYRAQQPMRDLARQQRDLMQLEAARSFAQLSASRRAAEAANAQ"
FT   CDS           join(902..2461,2465..3703)
FT                 /product="Gypsy-1_NG-I_2p"
FT                 /translation="MLTRRKTFKTKSRPASRESLDRENIKAVKRINKIIDL
FT                 HTNNPRVARKALARTLSRDALSSDEANAPAREQPANLLTGAYRQQQGNDFP
FT                 SRTEDESGEFERQVAPSPVDSVDGARAVPTTQRKPTSGLDWIGLNQKLAAW
FT                 NLKTDMRPMSAPNAGTPLPTAPNDGFKRKSQKVLLPMPSNPAGGKFERSKQ
FT                 GAFARFSRAGANQHNLASTLNPLPPFMFPVASVPNTMGQLNKNTNAFANEL
FT                 QRGAPERQARSTGAYGPALVVKETRRLSNASERPVSRTASVASTVIGSACT
FT                 ARSSQGGTDFAALSEHMESIEAKLSAKIDSLAEKIDSRAGPSHAKNLNVHE
FT                 AIREEVGKQVDILREIRESSLASTMPIQTPPSRKLTSQEPRRQEPVHLNSS
FT                 GKTPARKESAGLDRRPTKNRDPKTAQLIELAESSSSDSAADTESDIEAVTE
FT                 TRRNGGTRAEKLVHKKTAQQIRAKAEAAARTAVREVSSGTTGQNKNKRHAY
FT                 AGGFYPSDDDPESDPSDKDGKGKKDKPGNRKQDAARNPARRQPRRGDNRPP
FT                 SDDPDDDPSDGSDESESDEDDGDKGPETPRIKKNKNEIRSGTSKGEKNLLP
FT                 PKVSFNQAIGSLPDFDGDPDNLSLFSRAVRNVLKSHPAHEDYILMYVAKKL
FT                 TGEKTKGYRTRIGSYTSVEALLLDLTLHFANVSVADKIMAEIRAVKQGSAE
FT                 PAGDYGLRVERLINRYSTIIESAPDLSKAERRLRERLAQEDALEQFLLGLK
FT                 APLDHLVRGKNPTSLKAATTTAIGFEAKQSGRGALSTSRGPENGQAQVRRA
FT                 KAEQARPNNGARGAADSSPKPQPVSGDGPEKYCPYCNKYNHSLSECKTIAR
FT                 HVELQLIKNPNYSNDDNQGGGDNNRNNGASNRGSNNNRKYNKKDSQNNNKK
FT                 GKRDRSSDSNGRNQESGEQADKNNKNNLN"
XX
SQ   Sequence 11818 BP; 3567 A; 3154 C; 2880 G; 2214 T; 3 other;
     cccgccgtcc gtaacattct ggcatccctc gcgggtctcc gacacagtaa acgtaaagtg        60
     cggagaatat taaaactatt cgttgagttt accaacgaat agatcgtttt tacaaaaatt       120
     tcggtcgccg aggctcggaa taataattag tccgggctaa aatcatcaag gccaacagcc       180
     agccgcagga ctccgtccac gagatagacg ggggcaaata aagtctagtg cactggtgag       240
     acgccctcag ctccagcagt tcgagcaaga agttgcccag gaaatcgaaa aactccttca       300
     gagcaaccgg gcaaccacat cttcaccagc gcacaggtca ctgatcgttc tagcaccagg       360
     aaggccagag aacgcagcga gccattgcct ccgctacgtg atcgaactcc ggtgcggcgg       420
     tgaaccagcc gtagcagcag cctaaaaata cgcgccgctc tacaaaaaca aacagaaaac       480
     acgaaaatca acgcacgtcg tgcgcctcaa agtcgacctt cggccaacaa agcccgcctg       540
     ggccaacgat agccgtcagc gcggaccaga cgctgacgtg cgaagcagcc gcaggaagca       600
     gacagcgcgc gcaaccagac tccggcgcga gcagcagccc agctccacaa gccagctctg       660
     ccagcccagg tcttcgccca gcagcaacac ttcacgatga atccgagcgt tcttctaatg       720
     taagtttttc ttgccaatta ttcttgagca gcttggctac acgggagtac gcgtcgcgat       780
     ttattcgaga aaataaaaaa aaaaagtgtt tcgtttctct cgcgagcgcc gcaatacatt       840
     tcgcgtcgag taaaatcttc agaataagaa tttttctttt tgtctttctc tctcgtgaac       900
     gatgttaacc agaagaaaaa cattcaagac gaaatctcgc ccagcgagcc gcgaaagcct       960
     agaccgcgaa aacattaaag ctgtaaagcg aataaataaa attattgatt tacatactaa      1020
     taatccgcgg gtcgcacgca aagctctcgc gcgcacactc agccgcgacg ctctctcttc      1080
     cgacgaggcg aacgcgcccg cccgggagca accagcgaac ttgctgaccg gggcgtaccg      1140
     gcagcagcaa gggaacgatt ttcccagtcg cacggaggac gaaagcggcg aattcgagcg      1200
     acaagtcgcg cctagccccg tagactcggt ggacggagca cgtgcggtcc cgacgacaca      1260
     aagaaaacca accagcggcc tcgattggat cgggttaaat caaaaactgg cggcatggaa      1320
     tctaaagacc gacatgcgcc ccatgagcgc ccctaacgcg ggcacgccgc tccccaccgc      1380
     gccgaacgac ggatttaagc gaaagtcgca aaaggttttg ctgcctatgc cgagcaatcc      1440
     agccggcgga aaatttgagc gcagtaagca aggagctttt gcgcgattct cgcgagctgg      1500
     cgctaaccag cataacctcg ccagcacact aaacccgctt cccccgttca tgtttccggt      1560
     cgcatcggtc ccaaatacga tgggacagtt aaataaaaac acaaacgcgt tcgcgaacga      1620
     attgcaaagg ggcgcgcccg agcgacaagc aaggagcact ggtgcgtacg gtccagctct      1680
     tgttgtgaaa gagacacggc ggctttccaa cgcatccgag cgcccagtat cgcgtaccgc      1740
     cagcgtagcg agcacagtaa tcgggagcgc gtgcaccgcc agaagcagcc agggtggcac      1800
     ggatttcgca gccctgtccg agcacatgga gtctatcgag gcaaagctgt cagcaaagat      1860
     cgacagcttg gcggaaaaga tcgatagtag agccgggccc agccacgcga aaaatcttaa      1920
     cgtgcacgaa gcgataaggg aagaagtcgg aaagcaagtc gacatccttc gcgaaattcg      1980
     cgaatcaagc ttagcaagca ccatgccgat tcaaacgccg ccaagtcgaa agctgacgag      2040
     tcaggagccg cggcgccaag agcccgtaca cctgaattcc tcgggcaaaa caccggcgcg      2100
     caaagaatcg gcaggtctcg acaggcggcc gacgaaaaat cgagacccca aaaccgcgca      2160
     gctcattgaa ctcgcagaat cctcgagcag cgacagcgcg gcagacaccg agtctgacat      2220
     cgaagcggtc acggaaacgc ggcgaaacgg cgggactcgc gccgaaaagc tcgtgcataa      2280
     aaagacggcg cagcaaatac gggccaaggc cgaagcagca gcccgaaccg cagtgcgcga      2340
     ggtgtcaagc ggtacgacgg gccagaataa aaataaacgt cacgcatacg ctggcggctt      2400
     ctacccgtcg gacgacgatc cggaatcaga tccgtctgat aaagacggca agggaaaaaa      2460
     gncggacaag ccgggtaatc ggaagcagga cgctgccaga aacccggcac gtcggcagcc      2520
     gcgccgcggc gataatcggc caccgtcaga tgaccctgac gatgatccgt cggatggcag      2580
     cgacgagagc gagagcgacg aggacgacgg cgacaagggt cccgaaaccc cgcgcataaa      2640
     gaaaaacaaa aatgaaatta ggagcggcac gagtaagggc gagaaaaatc tgctcccccc      2700
     gaaagtgtca tttaaccagg cgatcgggag tctgcccgat tttgacggag acccagacaa      2760
     tctcagcctg ttcagccgag cagtgcgcaa cgtgttaaaa tcacacccgg cgcacgaaga      2820
     ctacatccta atgtatgtcg caaaaaagct cacaggagaa aaaaccaagg gctaccgcac      2880
     gcgcatcgga agttacactt ccgtggaagc cctactgctc gacttgaccc tacacttcgc      2940
     aaatgtgagc gtagcggaca agataatggc agagattcgc gctgtcaagc aaggcagtgc      3000
     ggagccagca ggagattacg gtctgcgcgt cgagagacta atcaatcgtt actcgacgat      3060
     tatcgaatcg gcgccagacc tatccaaagc ggaaaggcga ctgcgcgagc gcctagctca      3120
     agaagatgca ctagagcaat ttttgctcgg cctcaaggca ccgctagacc acctggtgcg      3180
     aggtaaaaac ccgaccagcc tgaaagccgc gacaaccacg gcaatcggtt tcgaggctaa      3240
     acagagcggt cgaggagccc tgagcacctc gcggggcccc gaaaatgggc aggcgcaggt      3300
     gcgtcgtgcg aaggctgagc aagctcggcc aaacaacggc gcgcgaggcg ctgcagatag      3360
     ctcgccaaag ccacaaccgg tctcgggcga tggccccgag aagtattgtc cgtactgcaa      3420
     taagtataac cattcgctta gcgaatgtaa gacaatagcc cgacatgtcg agttgcaatt      3480
     gatcaaaaat ccaaattact ccaacgatga taatcaaggt ggcggcgaca ataatcgcaa      3540
     caacggcgct agcaatcgcg gcagtaataa taaccgcaag tataacaaga aagactccca      3600
     aaacaacaac aaaaaaggca agcgtgaccg ctctagcgac agcaatggtc gtaaccaaga      3660
     gagcggagag caagccgaca aaaataacaa aaataattta aactaaaagc ataaaattca      3720
     tcgtcacggg tacgcaaccg ccgatcgtag ctgtagattg cccgcaaatg ttaaaacgca      3780
     gaggcaaatt ctacgccgat tcgggagcgg atatctcagt aataaaaatc gaggaattgg      3840
     caccgggcta tcctatcgac actgataaga tagtgaaaat tcagggagtg accgaaggca      3900
     cagccttcac acttggccaa gcagaaatcc aaataaatgg attaccctgc agtgtacaag      3960
     tggtaaaaaa tgatttcccg atagaaaatg caggaatcat cggctgggac gtaatcgaca      4020
     agcacaatgg ctgtgtcgat gcgctcagca aaagcctcaa gctaggtgcg acccacctac      4080
     ctttcgaggc tgacgaaaaa atcacaatcc ctccgcgtgt caaaatggcc atcagcgcac      4140
     ctctaaaaaa ccacgacgta aaagtcgggt gggtcccact gtacgacctt caccccgacc      4200
     tattattcgg caatttcgtt tccgaaaatc ggaacggccg tgtgcacggt gagtgcataa      4260
     acgtcagtga ctctgaaata acgatatctg ccccgatggt cgagttactc gaatgcgaag      4320
     aaatcgctaa cccgctatac caggccgatg aggacggctc agccgaaaat gtcgccacat      4380
     tcactgccag cttaagacgc ttattcggca cagaaaaccc aagtgaaaaa tatcgcgagg      4440
     tatctaacca caaccgcgag ctgcagtcga acgccgaaaa aaggcgcgcc agagtcgaca      4500
     aaattatgag tttagcagac ctcgagggat gcagcgaagc ggagaaaaac ataatccgcg      4560
     aaatcgttga cgaattcgcc ggtgtgttcg ggctcgaagg ggaacctctt cccgcgaccc      4620
     acctgttaca gcacaaaata atgctgaaat caaacaggcc tataaggaac caccgctttc      4680
     gcttcccgcc tgctataaag gagcacatga ttcgcgagct agcaaagcta cgcgagcaaa      4740
     acatcgtggt gccttctaac tctaattact cgtcgtcgct gtggatagtc ccgaaaaaac      4800
     cagatgccag cggaaacaaa cgattccggc tagtaactga ttttcgagga ctcaacgagg      4860
     aaacagaggg aagttgccac cctctcccgt tcacaagcga cattttggag catctcgcga      4920
     cggctaattt tataaccgtc atggacctca aacaagggta ccaccagatc gagatgcatc      4980
     ccgactcggc gcaccttaca gcgttttacg ctcccgacgg caaccatggc aaccagctgt      5040
     tgcaattcaa caggatggcg atgggcctga aggaagcaac tataacgttt actcgcgcca      5100
     tgtcattagc catgaagggc ttacagggcg acgaagtcga aatctacctt gatgacctca      5160
     tggtattcgg cgggacattc gacgagcaca ataagcgtct gcgacgagtg ctcaagcggc      5220
     tactcgaagc aaatatgact gtcgagccaa agaaatgcca atttctgaag aaagaggccc      5280
     aagtgctcgg gcatatagtc gggggcggtc tgatcaaaac agacccggcg aaaactcacg      5340
     ccatggccaa ttacccgacg cccaccgacg ccaaaaagct aaaacaagct ctcggcttgt      5400
     ttagctacta caggcgattc atacccgatt tttcaaaaat cgcatatccc ctattcaaac      5460
     tcctacaaaa agatataaaa ttccaatggg ggaaagcaga aaaaactgca ttcgaaaatc      5520
     tccgaaaatt aatggcggag gagccggttt tgaaagcacc agtcttatca gaacctttta      5580
     tcgtgacaac ggatgcgagc gactacgccc ttggcgcaat tttaagccaa ggaaaaatag      5640
     gcgtggacca cccgtgcgca tacgcatcgc gctgcttaaa gggcagcgag ctacgttatc      5700
     cgacgtacga taaagagctt cttgccgttg tttttgctaa agagcagttt aagccttatt      5760
     tatacggcag aagatggacc ttggtaacgg accacgaacc attgaagcat tatcatacgt      5820
     ccaaaaagcc agacctacgc tttaataggc tcaaggctgc gctaaacggc tatgacttcg      5880
     acgtcgtgta tcggccgggc attaaaaact cgaacgccga cgcgctctct cgcaatccgg      5940
     tactagcaga aggcgaagta aacccggatt tgccgcgcta cgagctctac gagctcgctg      6000
     accagcaggt aaaggaaaac cctgacgaag aagcaggtgc ccctccggga agagtcttcc      6060
     gtgcacgcgc cgtaaaaaag caaaaccaaa aggcgggaaa gaaagaacgc gtgtctgaat      6120
     caagctctag cgacgcatca aatcgcggtt taagcaaaaa acctcggcaa gataacgcac      6180
     taatttacga gcgcaacgag tgcgtggcgg ttagaaacga gttcaacgga tattacatct      6240
     gtcgcgcgtt acacgatgtt caccaaggcg acgaaaaaat cgctgttcaa tggtttacgg      6300
     aaaccaaaaa tctaaaacac gtgtacgcgc cggattaccg cgacgcggtt tggtttgatt      6360
     ccatattaac cagcgcatcc ttgaaacggc tcgacagaaa tcattatctg ctgggcgccg      6420
     cggaacgtac gcgcatagac gcaatcttac gcgaagccat tgaatttatc gccgacgcac      6480
     cagctccgaa gcctccggaa atttcggcag ttgcagccga attttcggat tccgaccaat      6540
     caatgaagtc ggtagcatca gcgctttcta gctcttcggg attttcgtta ctccctccgg      6600
     agttgcgccc ggttgcaaaa tacgtgtggc cctccgagcg aaaaactcgc gggtcggaaa      6660
     aaacaaaaat gacagtatcg cgaaaatcgc gcgaattggg caattcaagc agcgaggaaa      6720
     gcatacggat ctcgccgtcg ggaaaaatcg caaacgtgat cgacgagccg cagatcttct      6780
     ctttccctca aagggttttt tcgcgaagcc cgagccctcc gcagagccca cagacgcgcg      6840
     tcacgcctga accacccgta atgactaaaa gccctttgcg tcctacggct gccgaatttc      6900
     aaatgccggc gtccactcaa gccagccaac cgcgcgatag cagcaacgcg ccgcgtgctg      6960
     agagtgcgct agctgagccg ccgggaccca agtcaggctc aacgtggcca tggtcaggta      7020
     ataaaaccaa gaaaaaacta agggtaaata tcgaagggaa agacttcgat ggaaaaggcg      7080
     gcgtccgcat cgaatgttgg gaattaaact caagcgtcgc gccacaggat aaaataatac      7140
     ctgcacgagt ggaaaactcc cagcagcgta cacgcgcgcg cgagctgtcc gcaaggaaag      7200
     acaacgccat ggcgataagc aaaagcccag tcagctcgga aaaagagact gctgcgggta      7260
     acgcgagtgc gcctagcgga aaaaacagct ccaagaacgg tcgcaacgag agtggcaaaa      7320
     aagcacccga gacgggcagc cttacgccag ccgtcgtatc accgccaaaa tcagccgcgt      7380
     gcatgacaca cccggcaatg attccgtccc ccccctcgtc agtgggtcca aacgaggatt      7440
     ttgcgggaat actatcaaaa atcacttcga agatcggccg cttcgcgccg acttgcgaaa      7500
     atgtctaaaa accttaaaaa acgttatatt aaaggaaaat atccgcagca tagctctgat      7560
     tagagatctg gcgatgctca cggtatccga gtggacaaac ttcgtcgagt tattcgacaa      7620
     tatttttgcc ggagttgcat taattgcaat tctgtacaaa aataatttgc cagccccccc      7680
     cccccagtct ctgagcgctt taatctcatt aaagagtatc acgaggcaac aatgggaggg      7740
     catcggggca aaaataaaac atacagcaaa atcgccaatg atttttattg gcgaaatatg      7800
     cgccccgatg taaagcaatt tgtcgctcgc tgcccaacgt gccagagcaa taagctggtc      7860
     cgaataaaaa ctaggctacc catgcttatc agcaacacgc catcgatgcc atttgctcat      7920
     atcgccatag atttctatgg gccgttggaa cgttccaaac acgggaacag atatattttg      7980
     tcggcgcagg atatgctcac aaaatatata gtcctaacgc cagcaaggca tgcgaatgcg      8040
     gacgaggtcg cgcgaattct cacggagaaa attatttgtg tttttggacc acctgccgca      8100
     ttggtctcgg accaaggtag ccattttcaa aataaaattc tggaggaatt cgctaggatc      8160
     ttcaaaataa acaaattttg cactacggca tatcatccgc aggcaaacgg ctcgatcgag      8220
     cgtatgcacc atacgctgac cgagtacctg cggaagtatg taagacgtgc cgatacttgg      8280
     gatgaatgga cggccgtatg ccagcatgca tacaactgta ccgagcacga gagcactcgg      8340
     tactcgccgc acgagctgct cttcggcttc aagccaagaa cgccatccag cttcccccga      8400
     gtcagcgacg atatgtccta taacaattat ttgaccgaga tgacaaacaa tctcacggcc      8460
     ctgcaaacga cggcggccat gaacttggtg caatccaagt atcggtcaaa acactactac      8520
     gatcgtaaat taaactcgaa gcattttcgg gaaggcgaaa tcgtctttct gataaatgag      8580
     cccaagaaaa acaaatacct taaagaatac cgcgggccct tcgagataat tgcgatcaac      8640
     cgcaagacta ataacgtgac gttgcaaaac gacgagataa caaaagtcgt gcacgtcaac      8700
     aaaatcgaac ggccgagcga gctagcaaga aacgcagact tatcggattc cgaccgtgca      8760
     agttaggacg tttttttttc ctgttttttt gcgcgccccc gggcgtagcg caaaaaaaaa      8820
     aacaacgtcc taacctcaag atttaaaaat gaataaatga aagacactcc cagcgcgtca      8880
     aaagccagct gctcatttca gcaacataga tataaggtgc ttttaccatt aattgcaggc      8940
     tatgcgcagc ctgcgtgcta gggatcgagg aaactcccca ggtccacagc ccagggcgtt      9000
     tcgtgcagga gttaaaacag aacttggggt tgatcaccga gaagattgca cccctctcaa      9060
     catccagtac taactggaag ttaatagaaa aaatcgacct gaacgaattc ttccaagcga      9120
     gtaaagtttt ggtcgatcgc gtgtcaaccg ccgctcgagc atgccatccg cgttgcgatg      9180
     ccgccgggtt gatcaaagaa gccgaatccg tcaccgcgca ggctgaacgc gttataaaat      9240
     tgatacaaac ggatagcagc ggacaccaag ccccacggga gcgccgcgcc atactaccct      9300
     ttattggctc actccacaaa tggctatacg gtacactaac ggaagccgat gaagctgaga      9360
     ttcaagcggc agtgcaaagg atcgcagaag atactcgtct gacagccgcg ttattggcga      9420
     atcagaccga aatagttgaa cacgagttat cacacttgaa aaagaggatg cgcaaacttg      9480
     aatcatttgc agtagtgttg gaaaataatt cggccaaaaa cctcgccaac attaatagcc      9540
     tggatgtcga aatgaacatt aagacaactc tattgcagtt caaagccgac accgagctga      9600
     ttaatacagc aatactattt gcagtcaagg gtctgattca cccaaaaatc ctagcgccgg      9660
     agacgatcgc ccaagcggcg aaatcggtag aggattcact ttctcacgcg aaatttccat      9720
     tatctccggg cgatttttcc gtcattccga taatggaaat atcgagagtg gcaatcctat      9780
     tctccaacgg atacttaatt tatcacattg caataccgct ggtagatgtc gaggaattta      9840
     atctctttaa ggcatctccg atacccacag tgcaaagcat ccttaatagt gctcacacgg      9900
     ccgcttacat atggccagtg cacacctatt ttgcgataag cacgtcaaat ctcacctacc      9960
     ttccgatccc tgcagaagaa gtgcgcaaat tgcgcaaatt gcaggacaca ctgattgtgg     10020
     tcaacccgga accagtgcgc gagatcagtg acagcgtatc gtgcgagatc aaagtcgccg     10080
     cgggccgtaa gatagaaagc ccggaggtat gcgacatccg cttaaaaaga ttacgcgaat     10140
     cattctggct gcgcctacac cgagctaaca cctgggtgta ttcagccaga gaacgggaaa     10200
     atatttacat acagtgccca aaaaaggagc ttgtcaccgc acagataagc ggcgcaggag     10260
     tcctcgaact ccgcgagggg tgcgcagcgc acacggcaag tgcgcgcctg gtcgcctctc     10320
     atataataac aaagcagcta gagacgctat ctctcggcgc cttgcaattc aacatgtcca     10380
     aaatatgggc acatgtaaac gagtcttctg ccgcagcggc agatctcaag caagccatcg     10440
     ctatcggcac cgagcatcgc gccgataacg cgcacggctc ggacctcgac aacttgaaag     10500
     caggcgagag cttgcgcgag attacggcaa gagcacgtga cattgcctac aggaagaaaa     10560
     cagagttcga actcaaggac ctaagcggac acaccggcat tttgagctgg gtatcctggt     10620
     cctcgttgag catcgtactc atctgcgtcg tcgcagtatg gtgcttcatg cgctatcgtg     10680
     ctcagcaacc catgcgcgac cttgcgcgcc agcagcgcga cctcatgcaa ctggaggccg     10740
     cacgcagctt tgcgcagctg tcagccagta gaagggccgc cgaagccgcg aacgcgcaat     10800
     agcttccctt ctcccccctt cagggccctc gtgtaaaaac aaaaaaaaaa gaacgcgcga     10860
     aacggccagg gacaaagaaa cgcgcgccac ttttccgaaa acaataaatt aaaattttaa     10920
     tacaaaatat aatacccaaa taccggtaac gccgcgtcgc gcgaagcaag cacgaacgga     10980
     gctacggagc tctggagttt tatcgcgcgg gccgataacg cgtgcctcta tttctataag     11040
     aataatctaa tcgccaaaat agccaagctg ccgctatggc aagaaaaata tccaagcgat     11100
     atgatgcgct gcataacgcg caattttgtt atatatacat atatgcatgt aggttataat     11160
     aagaaaaata acaaaatata cacatttata tgccatatcc tacaaattag aatgttatag     11220
     cttataagga aataccgtaa gttgcgaatg caagtacgcc atgaggctta taattatatt     11280
     aataaatgta aacacactat gttatagctt ataaggcaat accgtaagtg gcgaatgcaa     11340
     gtacgccatg aggcttataa ctatattaag aaatgtaaac atactaatat taaaaaaaaa     11400
     aaaaaaaaaa aaaaanatat gtatcgagct ccgcctctaa aaaaaaaanc tctgtgagac     11460
     agcagcggct gtcgaaagac aacatccgcg ccgactcaca cacacacaca cacacacata     11520
     cgcacacata tcaacgctta acagattttt tttaagagaa aaacaaagag aactgacatt     11580
     acggagtcag caggatttag aaacccaatg cgcttctaat gcgctgtgct caagcactgg     11640
     catcccagaa aatagaaaaa aaaagaagta aaaacatgta cacatacata taccctcagg     11700
     cgaggagcgc gcgacagcgc gccccgtcgc cttacacact caagcaacgc acgcacggct     11760
     ccgccggcga ccctgttttt tgagggcgcc gaggacgtca cccgcgcgcc caagggcg       11818
//
ID   Gypsy-1_NG-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   ADAO01190636;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from parasitoid wasps: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_NG_;
KW   Gypsy-1_NG-I; Gypsy-1_NG-LTR.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-273
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from parasitoid wasps.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; ADAO01190636; Positions      17     289.
XX
SQ   Sequence 273 BP; 59 A; 81 C; 77 G; 56 T; 0 other;
     tgtaacggag gagcactagg cttctccgat gacgaaagcc gacgatggtc ctgcatcgtc        60
     agcggggaac gccgtcgcct gcgtttctca cgctcagaag tgcagtggat gcacttctgc       120
     acgtgggatc gctagccgtt gcctagtcgc gacaacggcg tagcgagtag tctaccggcg       180
     accacgacta agagaggagc tcaagcgtcg aataaagctc gaacagcatc tctttcttct       240
     tccttctccg tgtccggaga gcaccctcga cca                                    273
//
ID   Gypsy-1_OrIn-I repbase;    DNA;    INV; 4361 BP.
XX
AC   .
XX
DT   24-NOV-2020 (Rel. 26.03, Created)
DT   24-NOV-2020 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4361
RA   Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1542-1542 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..1070
FT                 /product="Gypsy-1_OrIn-I_1p"
FT                 /translation="MTSSIYFRLTKVSDSDFNIQALSLDKINWYLIPNEKQ
FT                 NLKIHKVLLSKSSIINSTKAINRINGYRTVSLKLDENLEKEYFDEDGNICF
FT                 EKYPLEELIVESSQPSLPRSLEIFPIQTPDQIQLHHVEKKFIIEKFNKSCD
FT                 AKEWFCSFEKECGRFQITSDSFKIEALRFFVDGSTKNWYDANIKKIGLKSW
FT                 TDWKDSFLNVFVDKGWSIVKKAFGFKYVGGSLVDYVLAKEKLCLEAEPSGT
FT                 EISRINLIVYGLPNDVQEKIDREKVTTMNLLFDEVRKLEFSFKKTSTDLIK
FT                 ISEQKKKREPCSQCTKLGYPNRFHSEAECRNKNKTNSLN"
FT   CDS           1055..4348
FT                 /product="Gypsy-1_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="DKFFKLNIRAKSDPLIQINAIVNSKLKVNAIYDTGSN
FT                 VTLINQRIVDLLSLEQIKERGALQTISGTNFSSARVTINLQIGNIQNSVSC
FT                 NVIMNENFSYDLLLGIDGIKKFKLIQDENLNIFQKSTNLRSEKDQIDNILR
FT                 SDKDQIDILRSDKDQIDILRSEKEQIDILRSEKDQIDNILRSEKDQIDILR
FT                 SEKDQSDIFCSNMDQVLTQNESETDDTEVNFNEDLKIDCLEANVTHIDSDE
FT                 RKKEIWRIIKLYSQLFAKDKFDIGKVKSKEAEIKLVRDEYVTSRAYKTSIP
FT                 DDEEIRHQIKALLQHKIIKESESPFASPVTLAYKKGENKKSRLCIDFRKLN
FT                 KLVVPESFPFPTIQDVIDKVVNCEYFTVLDINSAFWCVPLKAEDQEKTSFV
FT                 TKYGKFMFKVLPFGLKNAPAIFQRILSNIIRRNNLDEYCINYIDDILIFSR
FT                 TWEDHLQHIKKFLSVIQEEGFKLKLVKCLFGAKSVKYLGHTISKNRVSPSQ
FT                 DNLASIRKLRSPSDKSGVRSILGSINFFLKYIEHSASKLEPLHRLLRKGVP
FT                 FVWSNECEKALNLIKEFLCSSPILAIYDVNRPIYIETDASYEGIGATLKQP
FT                 QDDGILHPVAYYSRKLSEKEKRFDVIHLECKAIKDAIKYWQYYLIGRHFTV
FT                 CSDHKPLENLKTKARTDEILGDLIFYLSQFDFNIIYKPGKDNILADLLSRN
FT                 PVLEYFENEEAIEVVNLINYSDILKDQTDHLSEMKLAKRTQYKQGLILKTL
FT                 KGKSRIFVSPEFGNKIIEIVHHHFGHIGKSQMLATIRPHYYFKGLDKAVHQ
FT                 FCKQCKICMENKVRRIRAIGLLSQFGPATRPFQIMSLDSVGGFAGNRSPKR
FT                 YMHILVDHFTRYAWIATSKGQNAQDFIALLNPIVKKHSISILLADQYTGIN
FT                 SNNFKNFLAQNGIQIVFTCIDHPESNGLNERLNQTLVNRLRCKVNENKNRA
FT                 WSVLAEDCTKEYNQTIHSSTKFTPEYLMYGTTSSISPLPQENSSSLEEDRR
FT                 LAFENSRRSFHANKSRVDKNRAIYSFNVGDLVYIEDGSRLNRGKLDPVRVG
FT                 PFPIKKRLSNSFYEVASGKRRKISNFFHSSKLIPFFPQKLS"
XX
SQ   Sequence 4361 BP; 1578 A; 719 C; 765 G; 1299 T; 0 other;
     aatttaaatt tagatctgta acgcggatac gataaattat cacaagaaag aagaaagaaa        60
     aaattcaaga aataagtatg acttcttcaa tttattttag attgacgaaa gttagcgatt       120
     cggatttcaa cattcaggct ttgtcgttgg acaaaattaa ctggtattta ataccaaatg       180
     aaaaacaaaa tttgaaaatt cataaagttt tactatcaaa atcttccata ataaattcaa       240
     caaaagcgat taatagaatc aatggatatc ggaccgtttc gctaaaatta gatgagaatt       300
     tagaaaagga atatttcgac gaagacggaa atatttgttt tgaaaaatat ccgttagagg       360
     agttgattgt tgagtcatct caaccatctt tacctagatc tctcgaaatt tttccgatcc       420
     aaacacctga tcaaattcaa cttcatcacg ttgaaaaaaa atttatcatc gaaaaattta       480
     ataaatcatg cgatgctaaa gagtggtttt gctcttttga aaaagaatgt ggaagattcc       540
     aaattacatc tgatagtttt aaaatcgaag ctctaaggtt ttttgtagat ggatcgacaa       600
     aaaactggta tgatgctaat ataaaaaaaa ttggattaaa atcgtggact gactggaaag       660
     attccttctt aaacgttttt gtcgacaagg gatggtctat agttaagaaa gcgttcggat       720
     ttaaatacgt agggggttcg ttagtcgact acgtgttggc aaaagaaaaa ctttgtcttg       780
     aagcagagcc ttcaggaacc gaaatttccc gaataaatct gatagtttat ggtctaccca       840
     atgatgttca agaaaaaatc gatcgagaaa aagtaacgac catgaatttg ttatttgacg       900
     aagtaaggaa acttgaattt agttttaaaa aaacatccac cgatttgatc aaaatttccg       960
     aacagaaaaa aaagcgtgaa ccatgctcac aatgtactaa attaggctac ccaaataggt      1020
     ttcactcaga agctgaatgc cgaaataaaa ataagacaaa ttctttaaac taaatatccg      1080
     ggcgaaatca gatccactga ttcaaataaa tgcaatcgtt aacagcaaac tgaaagtaaa      1140
     tgcaatttat gacacaggtt ccaatgtaac tttaatcaat caacgcattg tagacttgtt      1200
     gtcattagaa cagattaaag aaagaggtgc gttgcaaact atcagtggaa ctaatttctc      1260
     ttcggcccgg gtaactataa atttacaaat tggaaatata caaaattcag tctcatgtaa      1320
     cgtcattatg aatgaaaatt tttcgtatga tttgctactt ggaattgacg gcattaaaaa      1380
     gtttaaatta atacaagatg aaaatttaaa catttttcaa aaatctacta atttgcgttc      1440
     cgaaaaggat cagattgata atattttgcg ttccgataag gatcagattg atattttacg      1500
     ttccgataag gatcagattg acattttgcg ttccgaaaag gaacagattg atattttgcg      1560
     ttccgaaaag gatcagattg ataacatttt gcgttccgaa aaggatcaga ttgatatttt      1620
     gcgttccgaa aaggatcaga gtgatatttt ttgttccaat atggatcagg ttttaactca      1680
     aaacgagtca gaaacggatg atactgaagt taatttcaat gaagatttaa aaattgattg      1740
     cctcgaagct aatgtaacac atattgattc agatgaaaga aaaaaagaga tttggagaat      1800
     aatcaagcta tatagtcaac tattcgccaa agataaattc gacatcggaa aagtcaagtc      1860
     taaagaagca gaaattaagc ttgtaagaga cgaatacgta acttcacgtg cttacaaaac      1920
     ctcgatcccc gatgatgaag aaataaggca tcagatcaaa gctttattac aacataaaat      1980
     tattaaagaa tccgaatctc catttgcatc tcccgtaacc ttggcttata aaaaaggcga      2040
     aaataagaag tctcggcttt gcattgattt tcgaaaattg aacaaattag tggttcctga      2100
     aagttttccg tttccgacta ttcaggatgt gattgataaa gtcgttaatt gcgaatactt      2160
     tactgttttg gacattaatt ccgcgttttg gtgtgtccct ttaaaagctg aagatcaaga      2220
     aaaaacgtcg tttgttacta aatatggaaa attcatgttt aaagttctcc ctttcggtct      2280
     caaaaacgct cctgctattt ttcaaagaat actgtcaaac ataataagac gaaacaatct      2340
     ggacgaatat tgtatcaact acatcgatga tattcttatt ttctctcgaa cttgggagga      2400
     tcatcttcaa catatcaaaa aattcttaag tgtgattcaa gaagaaggat tcaaattaaa      2460
     actcgttaag tgtttgttcg gtgcaaaatc tgtcaagtat ttaggacata caatttcaaa      2520
     aaatcgagtt tcaccatctc aagacaattt agcttcgatt cgaaaactaa gaagtccatc      2580
     agataagtca ggcgtaagaa gtatcctagg ttcgattaat ttctttctga aatatattga      2640
     acatagcgct tcaaaactcg aacctcttca tcgactatta aggaaaggag tacccttcgt      2700
     ttggtctaat gaatgtgaaa aggcgctaaa tttaataaag gaattcttat gttcatcacc      2760
     gattcttgcc atttacgacg tcaataggcc catctacatt gaaactgatg caagctacga      2820
     aggtattggt gcaactttga aacagccgca agacgacgga attctgcatc cagtggccta      2880
     ttattctcga aagctttcag aaaaagaaaa acgttttgat gtcatccact tagaatgcaa      2940
     ggcgattaaa gacgctataa aatattggca atattattta atcggtcgtc atttcactgt      3000
     ttgtagcgat cataaaccgt tggaaaatct aaaaactaaa gcaagaactg atgaaatttt      3060
     aggagactta atattttatc tatctcaatt tgactttaac ataatttata aaccaggaaa      3120
     agacaacatc ctagcagatc tattgtcaag gaatcctgtt cttgagtatt ttgaaaatga      3180
     agaagcaatt gaagtagtga acttgattaa ttattcagat attctaaaag accagaccga      3240
     tcatctttcc gaaatgaaat tagcaaagcg aactcaatac aagcaaggac tcattcttaa      3300
     aacactaaaa ggaaaatcaa gaatttttgt ttctcctgaa ttcggaaaca aaatcatcga      3360
     aatcgttcat catcattttg gacacattgg aaaatctcaa atgcttgcca cgattagacc      3420
     acactattac tttaagggtt tagataaagc ggtacatcaa ttctgcaaac aatgtaaaat      3480
     ctgcatggaa aataaagttc gtcgtatacg tgcaataggg ttgctttctc aatttggtcc      3540
     tgccaccaga ccttttcaaa ttatgtcgct cgatagtgtt ggaggttttg caggaaatcg      3600
     ttcaccaaaa cgatacatgc acattttggt tgatcatttt acacgatacg catggattgc      3660
     aacatcaaaa ggacaaaacg ctcaagattt tattgctctt cttaatccga ttgttaaaaa      3720
     gcattcaatt tcaattctct tggcagatca atacactgga atcaactcaa acaacttcaa      3780
     aaattttctg gcccagaacg gaattcaaat agtttttact tgtatagatc atcctgaatc      3840
     caatggcttg aatgaaagat taaaccaaac tttagtaaac cggcttcgat gcaaagtgaa      3900
     cgaaaataag aatcgggcat ggtcggtgtt agccgaagat tgtactaaag aatataacca      3960
     aacaatacat agttcgacta aatttactcc tgaatacctt atgtatggaa cgacatcctc      4020
     aatttcccct ttaccacaag aaaattcatc atcactggaa gaagatcgaa gactagcttt      4080
     tgaaaactca aggagaagtt ttcacgctaa caaaagtcgt gtagacaaga accgggcaat      4140
     ttattcgttt aacgttggtg atttggtgta catcgaagat ggcagccgtc taaacagagg      4200
     aaaattagat ccagttcgtg ttggaccgtt tcctattaag aaaagacttt caaattcgtt      4260
     ttatgaagtt gcgagtggaa aaagaagaaa aatatcaaat ttttttcaca gttctaaatt      4320
     aataccgttc tttccgcaga aactttcttg agggggggag a                          4361
//
ID   Gypsy-1_OrIn-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   24-NOV-2020 (Rel. 26.03, Created)
DT   24-NOV-2020 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-141
RA   Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1517-1517 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 141 BP; 46 A; 17 C; 20 G; 58 T; 0 other;
     tgtaaaaaca tatgttttaa ttatttatgg ttttcattgt caagtcatct gactctcagt        60
     tttaaaagtg tctcgcgtcg aagaacgtaa atttaaattt gcttgttatt ttgtaaataa       120
     attcgttcaa aagatcttaa a                                                 141
//
ID   Gypsy-1_OsLi-I repbase;    DNA;    INV; 7665 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-7665
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2020-2020 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           191..1360
FT                 /product="Gypsy-1_OsLi-I_1p"
FT                 /translation="MANEQANISSADLMNLTVSIANSMTLLTQRSCIQNVA
FT                 LTIPTFDGENPPLSRFAQLVEDGLTLIPEGTEREYLTIILTKLTGPARRST
FT                 LEHQFTSVSALIKHLKRRFGPGKSLSQFQTEIARLQIREYESLRNYIDRTS
FT                 HLVYCTRGAIKEKYPRHSEENIKQMEMDILENFLDGLPDRISFKVSAQNRD
FT                 IKNLEEAFDAVLEVDRKLRSRRDLARNTSPGGWNNRDHHSNERRNEISYPQ
FT                 SPTRHDRYRDRQRRPSNSEDEREGRPRTSAWTVRSRNQSNSPSYRSNSPRT
FT                 DQDEKRFTVLKRSEKDDTSQLYCWRCDTQGHDEKRCRRNSQNFRQRSYSRN
FT                 SSVESNKSLNSENAQRKGEAVSDLQRPRQKIVRFTGESSSRKPQHQE"
FT   CDS           1177..5640
FT                 /product="Gypsy-1_OsLi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EEFAKFQTAIILSKFFSRIKQVFKLRKRSTERRGGER
FT                 SAKTSPKDSQIHGRILIKETPAPRIKIKVPELELETAEFLIDGGAAVNLIV
FT                 RDVLGDQAKRITKEVIEITGLTKSPIYSIGTTILHIHGKPALFYVVENLAI
FT                 EADGIIGSPFLLQEEAEISYYHGTLVLKDKPIRPLRFSNYRDLAQQKNPKS
FT                 TKHRIEARTTKQIAIHIANPNIKEGYLPRLKTSENIYIGEAAVYNRDGICY
FT                 ALATNTGEDDVDIEIEPQYIHPYDIYDSSDDDPISSYMTENTPENRATRIR
FT                 NLLRTDHLNAEERKHVFNIVDEFSDRFYLPGDKLGEVPNFYHSIHTTDDVP
FT                 INTRQYRYPPVHQDEIQRQVKALLLQGVIQPSSSPYNSPLWIVPKKPDAKG
FT                 NKRWRMVIDFRALNEKTLSDKFPLPNITEILDKLGGAKYFTIFDIANGFHQ
FT                 VQMDPKDCPKTAFTTPDGHFEFVRMPFGLKNAPPTFQRLMNQVISGLENAH
FT                 VFIDDMVVFSSSLREHEIKVKKLLNRLREFGLTLQIDKCEFLRKEVTYLGH
FT                 ILTENGVKPDPRKLQAVKEFPIPKTQKNVQQFLGLTGYYRRFIKDYSIKSK
FT                 PLVQLLGKGIRFKWTEDQQKSFENLRDELCTQPILQYPDFNRPFIVTTDAS
FT                 DYAIGAVLSQGEIGNDLPIAYASRTLNKAERNYSATEKECLAMVYAVQYFR
FT                 PYLYGTKFTLVTDHRPLVWLHSVKDPTSRLMKWRLRLLEYEYQVIHKAGKT
FT                 NKNADALSRNPVPSCLPLIPRDPQDPDYKHIGQKPEIDTDSIGFRVRQLQR
FT                 DRERRPKYQEENTSSDEEPARGKVQHSPIADRPRVLPNLSHEISMPDEHME
FT                 TINFHPQANSTKITSTEEDVNLISFEEPSENTITENTIIANPQQDLLNHTP
FT                 LSLVTNEGILQPQPVNETIGTAIQQPQENFDRTVDPYPFTLLDTDTLSTEG
FT                 DDLRRKVQPSQTLEVIISPNTLTTEEGHYAHFIPADCKLVTPIGKLLLDTE
FT                 AIDLQQLMSKKPQKGDVIESANGSYKVYSIIISDNFYDTIKSEDILNGLQT
FT                 LKQHLDQNPIKSFRISAVGDFHKLPTNELTKLIKDVFNGTTQKIIICNCST
FT                 ITPSEEDRLQIIREAHDSLIGGHKGVTKTYKRIRAKYQWPEMHNEIRNYIR
FT                 KCPSCQEEKLVRAKTRQPMLITDTPIEPFDKVALDTVGPLPLTPSGNKYIL
FT                 TMQDCLTKYCIAVAIPNIRAATIADAFARHFIAIYGTPRAILTDKGTSFIG
FT                 SLMKNLSEIFKIKQITTSGYRPQTNGSLERSHIVLTEYLKHYMDNYEDWDL
FT                 LIPFAMFSYNTSVHEATNFSPYELIFGKPAREPSSFPTGERLKSYGDYLTE
FT                 LITHTIKIRNIAADNLIASKHRSKKYYDKHSRPVEFNVGDYAYALLEPRIS
FT                 KFDPHYVGPYEIINVTDMNNIVLRTPDKTITKHQDKLKHAYFPSTAEKTEI
FT                 TGNHDSGTTTSDTSGSGYESDSD"
FT   CDS           6441..7022
FT                 /product="Gypsy-1_OsLi-I_3p"
FT                 /note="Tudor domain."
FT                 /translation="MNTIKNIVLSSSVRIGIVHVDNPVEFWAQVDDGREEA
FT                 RRLYRDLYRYMSDRGHLHFPNQGRLTTGRLVAYRSKEGTWVRGEVQHLVDG
FT                 QFEVALRDHGKVVRAPVDQLRTLPPRFQNLPWQAFKVRVRGIRPVCRTWKI
FT                 EQAKRVLEGRRGLLTNIRGEGEVVADVALDRLPGQPPFNVAEAWLGMRYAV
FT                 PGRV"
XX
SQ   Sequence 7665 BP; 2706 A; 1641 C; 1483 G; 1835 T; 0 other;
     gaactggtga cagcggtggg atatagtcac atagatcatt ttcactggca taattacttt        60
     cgtggaattt gacacacggc tattactttg ttgaacaacg attgtatact agttttccta       120
     gtcaatcggg taacaagagg tatatactag ttttcctagt tacattcttt aaccaacaaa       180
     ttcattcaac atggcgaatg aacaagccaa tatttcttca gccgatctta tgaacttaac       240
     agtttcgatc gcaaattcta tgacactttt gacacaaaga tcctgcatac aaaatgttgc       300
     gttaacaata ccaacatttg atggtgagaa tccaccttta tcacgttttg cacaactggt       360
     agaagatgga ttgaccttga ttcctgaggg aacagaaagg gaatacctta caattatttt       420
     aactaaactc accggtccgg cgcgaagaag tactttagaa catcaattca cttcggtatc       480
     cgcgttgatc aagcatttga agagaagatt tggaccagga aagagcttat cgcaatttca       540
     aacagaaatt gccaggcttc aaattaggga atacgaaagt ttgagaaact acatcgatag       600
     aacaagccat cttgtttatt gtacaagagg agcgattaaa gagaaatatc ctagacattc       660
     agaggaaaat attaaacaaa tggaaatgga tattttagaa aatttcctag atggattacc       720
     agaccgcatc tcttttaagg tatcagcaca aaatagagac attaaaaact tagaggaagc       780
     ttttgacgct gtgctagagg tagacaggaa attaagaagt cgtcgtgatt tggcacgaaa       840
     cacatcacca ggaggctgga acaacaggga tcaccacagc aacgaacgtc gaaatgaaat       900
     ttcataccct caatctccaa cacgacacga tcgatataga gatcgacaga ggagaccatc       960
     taactctgaa gacgagagag aaggacgacc acgtacatca gcatggactg tgcgatccag      1020
     gaatcaatcg aattcacctt cttatcgttc aaattcacca cgcacagatc aagatgaaaa      1080
     acggtttaca gttttaaaac gcagtgaaaa ggatgatact tcgcagctat attgttggcg      1140
     atgtgatacc caaggacacg atgaaaaacg ttgtaggagg aattcgcaaa atttcagaca      1200
     gcgatcatac tctcgaaatt cttcagtcga atcaaacaag tctttaaact cagaaaacgc      1260
     tcaacggaaa ggcgaggcgg tgagcgatct gcaaagacct cgccaaaaga tagtcagatt      1320
     cacgggagaa tcctcatcaa ggaaacccca gcaccaagaa taaaaatcaa agttccggaa      1380
     ttagaattag aaacagctga atttttaatt gacggtggcg cggcagttaa cttaatagtg      1440
     cgcgatgttc tcggagatca agccaaacgt atcactaaag aagttattga aatcacagga      1500
     cttacaaaat cacctattta tagcatagga accacaattc ttcacattca cggtaagcct      1560
     gcattatttt acgtagtaga gaaccttgca atagaagccg atggaattat aggcagccca      1620
     tttttattac aagaagaagc agaaatttca tattatcatg gaacactagt attgaaagat      1680
     aaacctattc gaccacttcg tttttcaaat taccgagatt tagctcagca gaaaaatccg      1740
     aaatcgacta aacaccgtat cgaagctcga acaacaaaac aaattgcaat tcacatagct      1800
     aatccaaata ttaaagaggg atacttaccg cgactcaaaa catcagaaaa tatatacatt      1860
     ggcgaagcag cagtatataa tcgtgacggc atttgttacg cgttagcaac gaataccgga      1920
     gaagacgatg tagacatcga aattgaacct caatacattc atccttacga tatttacgac      1980
     tcgtcggacg acgacccaat ttcttcatat atgaccgaaa acacaccaga aaatagagca      2040
     acacgaatta gaaatctttt aagaaccgat catctcaatg cagaagaacg taaacatgta      2100
     ttcaacatcg tcgacgaatt ttcagacaga ttttacttgc ctggagacaa actaggagaa      2160
     gtaccgaatt tttaccattc aattcataca acagatgacg taccgattaa tacaagacaa      2220
     taccgatatc caccagtaca ccaagacgaa atacaacgtc aagtaaaggc tctgttatta      2280
     caaggagtca tacagccatc tagttcacca tataattctc cgttatggat tgtaccaaag      2340
     aaaccagacg ctaagggcaa taagcgttgg cgtatggtaa tcgatttccg agccttaaac      2400
     gaaaagactt tgagtgataa atttcctttg ccgaatatca ccgaaattct agataaattg      2460
     ggaggagcaa aatatttcac aatttttgat atagcaaatg gatttcatca agttcaaatg      2520
     gatcctaagg attgtccgaa aacagcattc acaacaccgg atgggcattt tgaatttgta      2580
     cgcatgccat ttggtttaaa aaatgcacca ccgacatttc aacgcttaat gaatcaagtt      2640
     atatctggtc tagagaacgc tcatgtattc atagacgata tggttgtttt ctcttcatca      2700
     ctacgagaac atgaaataaa agtaaaaaaa ttactcaatc ggctcagaga atttggactt      2760
     acactgcaga ttgataaatg cgaattctta cgtaaggagg ttacttattt aggacacatt      2820
     ttaacagaaa atggtgttaa gccagatcct cgtaaattac aagctgtaaa agaatttccc      2880
     attcctaaaa cacagaaaaa tgtccagcag ttcttgggac tgacaggata ttatcgccgt      2940
     ttcataaaag attattctat taaatcaaaa ccattagttc agttattagg taaaggaatt      3000
     cgttttaagt ggaccgaaga ccagcaaaaa agttttgaaa atttacgcga cgaactctgt      3060
     acacaaccaa ttttacaata tccggatttt aatcgaccgt tcattgttac cactgacgca      3120
     tcagattacg caattggagc tgtacttagt caaggagaaa taggaaacga tctaccaatt      3180
     gcctacgcat ctcgtacctt aaataaagcc gaaaggaatt attctgctac agaaaaggaa      3240
     tgtcttgcaa tggtttacgc agtacaatat ttcagaccgt atctttatgg aacaaaattc      3300
     acactcgtca cagatcaccg accgttagtc tggttacact ctgtcaagga tccgacatca      3360
     cgacttatga agtggagact cagactctta gagtacgaat atcaggttat ccataaagca      3420
     ggaaagacga acaagaacgc agacgcatta tcacgtaacc cagtaccatc ttgcttacca      3480
     cttatacccc gagatcctca agaccccgat tacaagcaca taggacagaa accagaaatc      3540
     gacacggatt ccataggatt tcgtgtgcgg caactacaaa gggacaggga aaggagaccg      3600
     aaatatcaag aggaaaacac tagctctgat gaagaaccag cccgtgggaa ggttcaacat      3660
     tctccaatag cagatagacc gagagtctta cctaacttat cgcacgagat aagtatgcca      3720
     gatgaacaca tggaaacaat aaactttcat ccgcaagcaa attctactaa aatcacatcg      3780
     acagaagaag acgtaaactt gatttcattc gaagaaccat cagaaaatac cattacggaa      3840
     aacacgataa tcgcaaaccc gcaacaggat ttacttaacc atacaccatt atcacttgta      3900
     acaaatgagg gaattttaca accacaacct gttaacgaaa caataggaac ggcaatccag      3960
     caaccacagg aaaactttga ccgtaccgtt gacccttatc cgttcacact tcttgacaca      4020
     gacactcttt ccacggaggg agatgacctg cgaagaaaag tgcaaccttc acagacactt      4080
     gaggttatta tctctccaaa caccctgacc accgaggaag gtcattacgc acatttcata      4140
     cctgcggact gtaaattggt aacccccatt ggaaaactgt tactggacac agaagcaata      4200
     gatttacaac agctcatgtc aaagaaaccg cagaaaggag acgtaataga atcagcaaat      4260
     ggctcataca aagtttacag tataataata tcagataatt tttacgacac cattaaaagt      4320
     gaagatatac taaacggact acaaacactg aaacagcatt tagatcaaaa tccaattaaa      4380
     tcatttagaa tatcagcagt cggagatttt cataaattac caaccaatga attaactaaa      4440
     ttaataaagg acgttttcaa cggtacaaca cagaaaatca tcatatgcaa ttgttcaacg      4500
     attacaccat cagaagaaga tcgattacaa ataattcgcg aagctcacga cagtttgata      4560
     ggaggacata aaggagtcac aaaaacatat aaacgcatca gagcgaaata tcaatggcca      4620
     gaaatgcaca acgaaatacg aaattatatc aggaaatgtc caagctgtca agaagagaaa      4680
     ttagttagag caaaaactcg tcaaccaatg ttaattaccg ataccccgat agaaccattt      4740
     gataaagttg ctttagacac cgtaggacct ttacctttaa cgcctagcgg aaataaatac      4800
     attctcacaa tgcaagattg tttaacgaaa tattgtatag cagtagcaat accaaacatt      4860
     agagcagcca caatagcaga cgctttcgcg agacatttta ttgccatata tggaacacca      4920
     cgagcaatat taacagacaa gggaactagt tttatcggaa gcttaatgaa aaatctttca      4980
     gaaatattca aaatcaaaca aatcacaact tctggataca gaccacaaac taatggatca      5040
     ctagaacgaa gtcatatagt actaacagaa tatcttaaac attacatgga taattatgaa      5100
     gattgggacc tattaatacc atttgccatg ttttcttata atacttccgt acatgaagca      5160
     acaaatttct ctccatatga attaatattt ggaaaaccag cccgtgaacc aagttcgttt      5220
     ccaactggcg aaaggttaaa atcatatggc gactatttaa cagaattaat aactcatact      5280
     ataaaaatcc gcaacatagc agccgataat ttgattgcct ccaagcaccg ttcgaagaag      5340
     tactatgata aacattcccg accggtagaa ttcaatgtag gcgattatgc ttatgcattg      5400
     ctagaaccac gaattagtaa atttgatcca cattatgtag ggccatatga gatcattaat      5460
     gtaacagata tgaacaacat tgtattgcga acacctgaca aaacgataac aaaacaccaa      5520
     gataaattaa aacacgctta ttttccatcc acagcggaaa aaacggaaat aacgggaaat      5580
     catgattccg gcacaactac ttctgatacc tctggctctg gttatgagtc agacagcgat      5640
     taaaggcggt tcaaaggtgt taccactggc gcaatcaacg ggtttgtttt acgataaatt      5700
     gtcagacata cggacatatc aatcgcaatg gcgattggtc acgtcattgg atgttgataa      5760
     ataccttgca catgcaccac cagtagaaca gataattctg gccatgaacc aactttgcaa      5820
     aaaacacggt ttagaaactt gcctcagcat ggaagtagca tggaaaatat tatacattac      5880
     ccatcgcgtc atacaattta tcagtaatca ttccgaaaat aacagaacat cacctatcag      5940
     ttttagaaac caattacact aatacagatc aagtaatcac aaattggaag aaccttccga      6000
     cagcaccaaa ctagaggaat tggagcatcg ggcgaaagaa ttggaacttc aagaaatttc      6060
     cacaaatcgt ataaaaatat caacattttc ctcgtttgga gtagtatctt tgatcctact      6120
     attaataatt gggacaataa taaaaagtaa tatacacaaa atcattaata aactaaaacc      6180
     tttggacaaa ccgaacgaaa ttgaattgca actggaagaa atacctaaaa actcagaaga      6240
     atcaaattca aataatataa atttaccaag ggaaaaatct tcagcaccta gaccaagtgc      6300
     cacaatattc taaggggccg tagccactcc tacacatccc tcctctaaga gtcgaaataa      6360
     gagtggggta agataagggt tttcagacta tataagcagt tctcggcacc atagtctcat      6420
     cagtagacat cctcaagaaa atgaacacca tcaaaaatat agttttgagc agttctgttc      6480
     ggatcggaat tgtccacgtg gacaatccgg tagaattctg ggcgcaggtg gacgacggtc      6540
     gggaagaagc taggcgactg taccgggacc tgtatcggta catgagcgac cgcggccacc      6600
     tccactttcc aaaccaggga agactgacca ctggacgtct ggtggcgtac agaagtaaag      6660
     aaggtacctg ggtccgagga gaagttcaac acctggtgga cggccagttc gaggtggctc      6720
     ttcgtgacca cggcaaggtg gtaagggcac cggtcgacca acttcggacc ttgccgccac      6780
     gctttcaaaa tctaccgtgg caggccttca aggtacgggt acggggtatc cgccctgtat      6840
     gcaggacctg gaagatagag caggccaaga gggtgttgga aggaaggagg ggtctgctaa      6900
     ccaacatcag aggcgagggt gaggtcgtgg cagatgtagc cctcgatcgt ctaccaggac      6960
     aaccaccatt caacgtggcg gaggcgtggt tgggcatgag atacgcggtt ccaggccggg      7020
     tataaaagca gaccacaaca ccattcttcc aaaacactta tctgagcgga ccgaaatgtg      7080
     ctacatcagg gaacaaccaa ctgagaggga caccagtcgc atcgagctgc tgatgaactt      7140
     gacggcccgc ctgtgcatgc gcagcacttg ctacagatta gacgttggca ttgtctgtat      7200
     gcagtgtgct ctcgaagcag cccttggagc agcaaggatc tatgacatgg tggaggtaca      7260
     ctatccacta ccaacggcat atccgcctgg ggcctgcgat atttgcagcg cgcccctgat      7320
     ggagttgcag gccgcctacc actgcgagga gtgtattgcc gccatcatca tggaaatgga      7380
     ataccaaaga gcaaaccaac ccataccacc gcctgcaata gtaccaacct ggtacaccga      7440
     gagacaaatc cgatcgaggc agcctggacc cagacgtacg cttcgacttc ataccgcagt      7500
     tagcagcatc accaaccatc acacgtagcg ataagtacac acacatcaca cataacaccc      7560
     gacatattgc attacaacac caaaacttca acacattcta gtgagtgttt tcctttccaa      7620
     ttgaaagcat cacgattacc gcgatgtttc atctaagggg ggagg                      7665
//
ID   Gypsy-1_OsLi-LTR repbase;    DNA;    INV; 741 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-741
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2021-2021 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 741 BP; 228 A; 192 C; 146 G; 175 T; 0 other;
     tgtcacgtag acagaccgtt tttatcaaac gtgtctcctt tcaaataagc ttaaacatct        60
     ggaaaggaaa actctcgggc aaaccgacca tttactctcg taataaacag aaggcccacc       120
     gatagcagaa ccaaacactt gggaaagcaa tgggtccgcc gtaatcaaat agcagatgca       180
     accactctaa actgtcgcag aggcaggtgg acccagcctg atcactcgaa tagtaaccag       240
     accacccttc ttaattagta tataaacccg ttcgtaccaa cgatcggggg cagtaccaga       300
     gttcatctcg tgtcgagcac gtcgtgtacg gtagtgagtt ggttactatt agtgagatcg       360
     ggttgaagtc cccttcgagc aacattcacc ttatagaatc cgcgagtcgt gtttctattt       420
     ggcattacaa tcaaccacac acaacacccc cgcattgcca gtgcgtgaac accgagcata       480
     gtggaaatag gtaatatatc acattataca cctatattcg cgacaacaac atctgtaata       540
     gaccaagatt gtagaatata tacattgctg tgtcaaaccc acattagcat tctcctttaa       600
     acccagtgaa accttgtgac agttcctacc acaatacaat cttaccgctc gggttgtatt       660
     gataataaaa taagttacgc ggccgccaat cagaaagcct ctgatagcca cgcgcgctgc       720
     caagccgtcg gccacgtaac a                                                 741
//
ID   Gypsy-1_PBa-I repbase;    DNA;    INV; 4716 BP.
XX
AC   ADIH01020178;
XX
DT   16-SEP-2011 (Rel. 19.03, Created)
DT   16-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PBa_;
KW   Gypsy-1_PBa-LTR; Gypsy-1_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4716
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to RU (16-SEP-2011).
XX
DR   Genome; ADIH01020178; Positions   10390    5675.
XX
CC   Positions [3567-4049] - Integrase core
CC   'GTAT' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2856..4421
FT                 /product="Gypsy-1_PBa-I_1p"
FT                 /translation="MPLGLGAILLQKQQNNNWAAIAFFSQTTNRVERNYHS
FT                 YELEMLVMVRAVERFHLYLYGLRFTIVTDYSNAIVYAVNKANLNPRIARWT
FT                 LALQNYYFKVIHRPGNKMQHVDALNRVGYVDERPIERELEFRQLADPKIQE
FT                 IANKLENEDNDKFKLIDGLVYRKENEDIKFVVPKLMISGVIRAHHDEMAHA
FT                 GFEKTLQGVKEYFWFPGMRKRINSYIENCIICVMANDSMNRFKGETSLYPS
FT                 PTAVMEIIHIDHFGPLQETCDKYKHILVIVDAFSRFTWLNAVKATSTREVL
FT                 GILRDIFATFGNPNEVVTDRGTAFTSNEFREFVESNQIKHRKVAVAAPWVN
FT                 GIVERVNRFIKSSLTKLINNSSEWKDRVKDIQYIINNTYHAVTKTSPTKLV
FT                 LGYSQRSHTDYPLAKFTHKLTSIDVDIEAERKKNCDMALTATDKIRQYNKE
FT                 YCDERSRKPSKFESGEYVLVRDTQMKPGVNAKLKAKYKDPYMIRILGNHRY
FT                 VVQDIPGFNLTTRPFNTILSSDRLKR"
XX
SQ   Sequence 4716 BP; 1565 A; 864 C; 1091 G; 1196 T; 0 other;
     gtcaaaattt cagaagtggg atctgaattc gcgtcatcat taaaaaaaaa aagagaaaaa        60
     taaacgctgt gtcgatcacg ggtacggaac aaggtgggca cgtgcacgtg atgccgagga       120
     caaggatgat ggaaagagcg acacttgaag cagcaccact ggagcaactc caaaaggaag       180
     cgaaacgctt tcgtctccca ttgtcggagg atcgaaaaac tcttattgag acaattatgt       240
     ctcatttaga gaaaataggg ccgacggagc cagcaaggga agaaagaggg gaaacagcct       300
     cattggaaca tccagtaaca gcgaccgcat tataccacgc gctcgcgagg atcacggaaa       360
     ttatcctgca acaacagaga gacatgcaaa aagctcaaaa ccagtttatg acgcaggtac       420
     tccaagaagt tagatccaat tgtacgggaa cggagagaca aggggtcgcg caatgaaatg       480
     ggcgaaagcg gggaatcgag attatcaagg gctggctcag gagctatgga ctgctcacca       540
     gctcaacagg agatacggcc gactccctac gcatcagacg tatcaacagg gaatatagtg       600
     aattggttgg cttcacagat tcccgaattc ggtggaactg aaacagaaaa tattagtgca       660
     tgggtgcaac gcgtagacaa ggtagcacaa gtacacggtg cgtcagatgg agcttactcg       720
     cggcgtcgag caggttaata aaattcgcac gcacgtggta cgatatccag aacggagttg       780
     caattgaatc gtggttcgga cttaaaccgg agttagtaaa agtataggga agaaagtgcc       840
     cttctataag cagatgcagc gaatagaagc ccgtaaatgg agcccgaaca aagaaacgtt       900
     cgatcagtac gtcattgcta aaagagcatt gatgcaaatg ttagacttac ctactagaaa       960
     cgtgattcat attcttatag gcgggatacc gcagagtgcg ttaagggcga cagcactctc      1020
     tgtagcagat acctccttag acgtattcct ggagaaaatg agaaatatta cggaaggtat      1080
     gttagatagt gagagaaaat cgtgtgtttc accgaacaag actaaagaca tagcgtgtcg      1140
     caattgcgga aaacgtggac atacacacaa ggaatgcagg ggcgatccta cctgcttttt      1200
     ctgcaaggaa aaaaggcatc gtcaattcga ctgtcaggcc ctgcggaatc ggcaaggggc      1260
     gcaaggatta cgtcggcaac aaacggtgca agcagcagca gcagtgttcg aggaggcaga      1320
     gggagattcg gtggccctgg tatcggagga cgaaaacagc aggttggaac tatccagacc      1380
     actccatcca ggtgaactcg atttgtaata acgcatgtga gttagtggcg ttaatggaca      1440
     ccggaagtcc tgtttctttt gttagtttag atatatataa agtgtggatc gagccataca      1500
     ccaaggttct cttaccagtc gatcgctgtc tagtcaacct aaatcgcgcg ccactaaatc      1560
     tcgtcgggat cgttccagta gagttaacca ttagcgccct gcgcggtcgt aagtttaaaa      1620
     taaacctata tataataaac gaaaaagcgt ttaacggcga cctaatttta gagattttat      1680
     agcaaaagag aaactcactc tagtgtataa gttgcatcag acggaggttg gcgatccggt      1740
     ggctgatgtg accctctttg acaacctccc tctctatgtt gcggatttgc ttagcaacct      1800
     gcaacaagta atacaagata gcgaaataga ttatgattta aagacaaaga aacgattgat      1860
     ggaggaaatt ttagcaatag agaatttgaa agtaataccg gttgaagacg gttattccgt      1920
     tcgcgttcat ttgaaggacg actctgtgta tgcttttgcg ccgcgacgat ttgctcatgt      1980
     tgaacggcta caaataaggg aagtcgtgga tgacctgttg aaccgaggga tcatccagcc      2040
     gagtatctcg ccatattgcg cacggatcgt acctattaaa aagaaaaacg gcgcgatcag      2100
     attatgtgtc aatttgagat cgttaaatag tcgagtaata aaacagaagt accttttccg      2160
     gtgatcgagg attgtttgtc gagactttat ggaaagtcag tgtttacgtt gttagatttg      2220
     aaggacgggt ttcatcatat caaagtacat gaggaatgta taaagtattt tgctttcgct      2280
     acgcctgatg ggcaatacga atataaatat ttaccattcg ggtattcaga agctcccgcg      2340
     gaattccaga agcgtcttgc aaatactgga ttcgctcata cggcaagaca aggttatcgt      2400
     ttatatagac gatattctta ttccgtcgga aaccgtagac caaaatctag ctgtcttgaa      2460
     cgagacgttg acgtgcctaa aaaaatataa gttcgaacta aagtatacag tgtcaatttt      2520
     tacgtcgaaa aatagaattc ctaggctata taatttctga aaacggggtc acccttagcc      2580
     cgcggcatac cgaagctgta cggaatttta aacaaccgaa agacgtacac gaagtacgca      2640
     gatttttagg cctagccggt tattttagaa aattttagaa aatttatcag agactttgcg      2700
     gtgaaagccg ggccgatgca aaatattctt aaaaaaggtg ttatttgatt tcgatgaacc      2760
     atgtattaaa gcattcgaaa atttaaagaa agaacttacc acatttcctg tgttgtgctt      2820
     gtataaccca gcagctgaga ctgagctgca tacagatgcc tttgggcctt ggagctatac      2880
     tgctacagaa gcagcagaat aataattggg cggcaatagc tttcttcagc cagactacga      2940
     accgagttga aagaaattat catagttacg agttagagat gttagtcatg gttagggcag      3000
     tggagagatt tcatttatat ctttatgggt tgcgttttac tatagttact gactatagta      3060
     acgcgatagt ttatgccgtg aataaagcaa atttgaatcc gcgaatcgcg cggtggacgc      3120
     ttgctttgca aaattattat ttcaaagtta ttcaccgtcc gggtaataag atgcaacacg      3180
     tcgacgctct caatcgcgtg ggctacgtag acgaacgccc catagaaaga gagcttgaat      3240
     ttcggcaact ggcagatcct aaaattcaag agatagcaaa taaattagag aatgaagaca      3300
     atgataaatt taaattgata gacggtctgg tttatagaaa agaaaatgaa gatataaaat      3360
     tcgtagttcc gaaactaatg atatctggcg tcatacgcgc tcatcacgat gaaatggcgc      3420
     atgcagggtt cgagaaaaca ttacaagggg taaaagaata tttttggttt cccggtatgc      3480
     gtaaacgcat aaatagttat atagaaaatt gtattatctg tgtaatggct aatgactcca      3540
     tgaatcgttt caaaggggag acatcactgt atccgtcccc aacggctgta atggaaataa      3600
     ttcacattga tcatttcggt ccgttacaag aaacttgtga taaatataaa catatactag      3660
     tcatagtcga tgcattctct cgctttactt ggttaaatgc agtcaaagct acatcaactc      3720
     gagaagtact cggtatatta agagatatct ttgcaacgtt tggaaatccg aatgaagttg      3780
     taactgatcg tggaacggca ttcacttcaa atgaatttcg cgaatttgtc gaatcaaatc      3840
     aaattaaaca taggaaagtt gcagtagccg ccccctgggt taatggaata gtcgagagag      3900
     tgaatcgatt tatcaagagt tccttgacta agttaataaa taattcgtcg gaatggaaag      3960
     atagggttaa agacatacag tatattataa ataacactta ccatgctgta acaaaaacgt      4020
     ctccgacaaa actggtgttg gggtacagtc agcgttccca tacagactat ccgcttgcaa      4080
     aatttactca taaattgacg tcaatcgatg tcgatataga agctgaaaga aagaaaaatt      4140
     gtgatatggc attgacagca acggacaaaa tacgtcaata caataaggag tactgcgacg      4200
     aacgatctcg aaaaccgtcc aagttcgaat caggtgaata cgtactagta cgagacacac      4260
     aaatgaaacc gggcgtaaat gcgaaattaa aggctaaata caaggatccg tatatgataa      4320
     gaatactagg caatcatcgt tacgtagtgc aagacatacc tggttttaac ttgacaacgc      4380
     gtccatttaa cacaattctt tcgtctgatc gtctcaaacg ttgacaatga tagcgataga      4440
     aattagatat attttaagta cgacatacat agtattaata aggattagta taagtgtatt      4500
     gtagatagat tacggtaaaa taagatttaa attaaaaatt gtttaaacat aaggttaaga      4560
     aaataagaga cattgcgttg tttacaagcg atattagcat aaataactga tacgtctatg      4620
     tacctgtgac aataaaaatg cgatagataa acattactat atttgagtga taaatatgta      4680
     tcttcgggga cgaacataaa tgcaggatgg ccgagc                                4716
//
ID   Gypsy-1_PBa-LTR repbase;    DNA;    INV; 533 BP.
XX
AC   ADIH01020178;
XX
DT   16-SEP-2011 (Rel. 19.03, Created)
DT   16-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PBa_;
KW   Gypsy-1_PBa-I; Gypsy-1_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-533
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to RU (16-SEP-2011).
XX
DR   Genome; ADIH01020178; Positions    5674    5142.
XX
SQ   Sequence 533 BP; 165 A; 111 C; 120 G; 137 T; 0 other;
     tgtaagaagt tcctaagaag ttcctatgac aaccggtgga tggcgccaag agtgctgttc        60
     agcgaccaac aagagcgcct ctcgatcgaa cacgacacga gtgtgtgata cttggagagg       120
     accaatcgga taagggctga tgcaatccgt gttagcttta agatcatcga acgtgctccg       180
     atgcgcggag cagcgagcga agaggactct ctcctcagtc ggcgaatgag acagagtcaa       240
     tccgcgagta tcatccgcga gagttcaagt cgaataatcg gaaccaaata gttaacatag       300
     tcgagatatc gtgggaagcg atatcagcat aatcgttgta tttcgggcag actcagtgaa       360
     aatatatata ttctttatta tattaaagtt gcctaaaagt tattgtgcct gctccattat       420
     ccatcacctc tctcagtgcg tgtattaaac cacagacagt aattgtaata acggatacta       480
     attcctgaca aacggttact ttattcaaat tcaaaagtta taagaatctt aca              533
//
ID   Gypsy-1_PPo-I repbase;    DNA;    INV; 3928 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PPo-LTR;
KW   Gypsy-1_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3928
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2965-2965 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..3787
FT                 /product="Gypsy-1_PPo-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MVXGXTXAXDARSGAVGXHGGAATAHGGAAGAGSXRG
FT                 XXAGAGVXRSGAAAAIWRGGAXARGXGATRLPVRSRHVAXQPXRGTGAAEL
FT                 XATGEAVGRMLSGNGTLVWAMELGGFASRYVFLRAACVGRGDICGXRVPSA
FT                 AAGXAAXATAXDTADGGGAEVDSGATSRKVSLNHLRLHEYKPVSVPIVIDN
FT                 ITINMEVDTGSAVSCISSETYRRYFRHHRVEDSGLILNFYDGTKVKPVGFI
FT                 KPLVRWGDHTKRLELFIITGGHTSLLGRQWLSELNIRVPIFSNCHYLDNEK
FT                 LKWSTEIDKLFSRHKEIFSGGLGRFTGGKATLRVREGAMPVFHRARPLPYA
FT                 LRERVDAELDRMLRDGVIEPVDCSDWASPLVPVNKADGSLRVCADYKATLN
FT                 PVLQIDRYPLPRIEDLMVKLSGARYFSKIDLSQAYNQIELDETRKYTVVNT
FT                 HRGLYRYNRLVYGLASSPGIFQRIMCNLFRGIPNVEIFLDDVIIGGKTLRE
FT                 HLDALREVFSRLHGAGLKLKASKCVFLVDEVRYLGYIISREGIKTDPSKIE
FT                 AIVKIPRPSNITELRSFLGILNFYGKFVRNMSDRLVPLYELLKKSKEWYWS
FT                 AECEKSFIEIKKILCSVDTLAHYEPKKPLILTCDASGRGVGGVLTQIDAGG
FT                 GGERPVAYASRTLTDAEKNYSQIHREALAIIFCINKFHQYLYGRHFTLRTD
FT                 HKPLVSIFGPNAGIPTMVASRMQRWAIILSAYSFDIEYVRTDENGADGLSR
FT                 LPVRGGKQAEPTPPEQTYLHSIQDSLGLDYNEIKRETARDPILARLLLYIR
FT                 DGWPVQCELANMKPYWNRRNELYEELGCIMWGHRLVVPEQCKNKILTIIHE
FT                 PHMGIVKSKALARSYVWWPGIDEAVERACRECMACAAQADAPPRQTPRMWP
FT                 WPARPWSRLHLDFLGPIAGKTYLVVVDAMSKWVEVFHMTGISANYLIDRLN
FT                 ELFSRFGIPRQIVTDNGTQFTSKEFEYFNRHNGIEHIFTSPYHPSSNGLAE
FT                 NAVKTLKRVIKKALQEKQDINRALWSFLLYYRNVEHCTTGESPALLLLGRQ
FT                 IRTRLDAIRPDREGHVRRAQQRQQDAAGGASRTLDRADDVWYRQYLKGEKW
FT                 LPGQVVEVLGSSNYKVRNKEGEVVHRHIDQLRRRPSEGRRSLASTTPGLGR
FT                 QAGDRADSQGSDPGVSEAEEVGSEGPAGRGAAAAGQPASGPQPAPASPGGE
FT                 RSPSPARVRPVRQCRLKRPN"
XX
SQ   Sequence 3928 BP; 934 A; 843 C; 1219 G; 885 T; 47 other;
     ttggcgacga ggataaagtt acgkggcggt kmtattgtgc ggaktgcgca atacgstgtt        60
     twgtskgwat cgwcggwgtt ttgwcattgt aawtacaatg gtkktcggaw atacggktgc       120
     gkgcgacgcg cggagcggcg cggtcggmca wcatggcggg gcggcaacag cgcacggcgg       180
     agcggccggt gcgggaagct kscgcggtmg sstkgccggk gcwggagtgt kgcgcagcgg       240
     agctgctgca gcsatctggc gcggcggagc gwttgcgcgg ggagmtggcg cgacgaggct       300
     gccagtkcgg tcacggcacg tggcggwwca gccgktgcgg ggaactggcg cwgcggagct       360
     gmtggcgact ggcgaagcag tggggcggat gctgtccggc aacggtaccc tggtgtgggc       420
     gatggagtta ggcggtttcg cgagccggta tgtttttttg cgtgcagcct gtgtaggcag       480
     aggggacatc tgcggcgmgc gtgtcccgag cgcggcggcm ggsgwsgcag cggkggccac       540
     ggcgcsggac acagcggacg gcggcggagc ggaagtagac tccggggcga caagccggaa       600
     ggtgagcctt aatcacctta ggctgcacga gtacaagccg gttagtgtac ctatagttat       660
     cgacaatatt accatcaata tggaggtgga tacgggctca gccgtctcat gtatcagcag       720
     tgaaacatat aggaggtact tcaggcacca ccgtgtcgaa gatagtggct tgattttaaa       780
     tttttacgac ggcacgaaag ttaagccggt agggtttata aaaccgttgg tccgctgggg       840
     tgaccacacg aaaaggctgg agttatttat tataacgggt ggccatacat ctttgctcgg       900
     gagacagtgg ttatctgaat taaatataag agttccgatt tttagtaatt gccactattt       960
     ggataatgag aaattgaaat ggtcgactga aatcgataaa ttgttttcta ggcataagga      1020
     gatattcagc ggcggtctcg gtcgctttac gggcggcaag gcgacgctgc gcgtgcggga      1080
     gggggcaatg ccggtgtttc accgagcgcg gccactgccg tacgcgctgc gggagcgcgt      1140
     cgacgccgaa ctggaccgca tgctgcgcga cggcgtcatc gagcccgtcg attgctccga      1200
     ctgggcctcg ccgctggtgc cggtcaacaa ggcggacggc tccttgagag tttgcgcgga      1260
     ttataaggcg acgttaaatc cagtgttgca gatagatagg tatcctttgc cgcggataga      1320
     ggatttaatg gtcaagttaa gtggggcgcg ttatttttct aaaattgatt tatcgcaggc      1380
     gtataatcag atcgagttag acgagacgcg aaaatacacc gtcgtcaaca cgcatagggg      1440
     gctttataga tacaacagac tcgtttacgg attggcttcg agtccgggaa tttttcagcg      1500
     cattatgtgc aatctattcc gcggtatccc taacgtcgaa atatttttag atgacgtcat      1560
     cattgggggt aaaacattgc gtgagcattt agatgcctta cgggaggttt ttagtaggct      1620
     acacggtgcg gggcttaaat taaaagctag taagtgtgtt ttcttagtcg acgaagtacg      1680
     ttacttagga tacattataa gtagggaggg catcaaaacg gatccctcca aaatagaagc      1740
     aatagttaaa atacccaggc cgagtaatat aacagaactt agatcatttt taggtatttt      1800
     aaatttctac ggaaaatttg taaggaacat gagtgaccgt ctagtaccat tgtatgagtt      1860
     acttaagaaa agtaaagaat ggtattggtc cgcggaatgt gagaaatcat tcatagaaat      1920
     taaaaaaata ttgtgtagcg tggacacctt agctcattac gagccaaaga aaccgctcat      1980
     attgacgtgc gacgcgagtg ggcggggcgt cggcggcgtg ctgacgcaga tcgacgccgg      2040
     cggcggtggc gagcggccgg ttgcgtatgc gtcgcgcacg ctcaccgatg ccgagaaaaa      2100
     ttattcgcag atacaccggg aggcgttagc gatcattttt tgtattaaca agttccacca      2160
     atatttatat gggcgccatt tcaccttacg tacagaccac aagcccttag tatcaatttt      2220
     tgggcccaac gcggggatac cgacaatggt ggctagtcga atgcaacgct gggcgataat      2280
     actctcggct tactcgttcg acattgaata cgtgcgtaca gacgagaacg gcgcggatgg      2340
     tctgtcgcgg ttgccagtcc gcggcggtaa acaagctgag ccaacgccgc ccgagcaaac      2400
     gtacttgcat tctattcaag actcattagg tttagattac aatgaaatca aacgcgagac      2460
     ggcacgggac cctatcttgg ctagattatt actttacatt cgggacggtt ggcccgttca      2520
     gtgtgaatta gcaaatatga agccgtactg gaataggcga aatgaattat acgaggagtt      2580
     aggctgtata atgtggggcc accggttggt ggtgcctgaa caatgtaaaa ataagatttt      2640
     gacgattata catgaaccac acatggggat agtaaagtcg aaggcgctcg cccggagtta      2700
     tgtgtggtgg ccggggatcg acgaagcggt ggagcgtgcg tgccgggaat gtatggcgtg      2760
     cgcggcgcag gcggatgcgc cgccgcggca gacgccgcgc atgtggccct ggcccgcgcg      2820
     accttggtcc cgtctccatc tagatttcct aggtcccatt gcgggaaaaa catatttggt      2880
     agtcgtagac gccatgtcta agtgggtgga agttttccac atgacgggta tctctgcgaa      2940
     ctacctaatc gaccggctta acgaattgtt tagtagattc ggtataccgc ggcagatcgt      3000
     cacggacaac ggaactcaat tcacctccaa ggaattcgaa tatttcaacc ggcacaacgg      3060
     tatcgaacat atttttacgt caccgtatca tccctcgtcg aacgggttgg ccgagaacgc      3120
     cgtgaagacg ctaaagcggg taataaagaa agcattgcaa gaaaaacaag acataaatag      3180
     ggctctttgg tcgtttctgt tgtactatag gaacgtcgag cattgcacga caggtgagag      3240
     tccagcgtta ctgcttcttg gtaggcagat tcggacgcga cttgatgcga ttagaccgga      3300
     ccgggaaggg cacgtgcggc gcgcgcagca gcgccagcag gacgcggccg gcggagccag      3360
     tcggactctg gatagggcgg acgatgtgtg gtacagacag tacctaaagg gggaaaagtg      3420
     gctgccgggc caagtagtag aagttttagg cagtagtaat tataaggtta gaaataagga      3480
     gggggaagta gtgcacaggc acattgatca gttgcggagg cgacctagcg aaggtaggcg      3540
     atcgctagct tcgactacgc ctgggttggg cagacaggcg ggcgacagag cggactctca      3600
     agggtcagac cccggggtct cggaggcgga ggaggtcggg tcggaggggc cggcggggcg      3660
     gggcgccgcc gcagccggcc agccggcgtc ggggccgcag cccgctccgg cttcaccggg      3720
     cggggagcgc tcgccttccc cggccagagt tcgccccgtt aggcaatgtc ggctaaaaag      3780
     gcctaactag ttataagaaa attggaatta aatggtttat ttattagatt tgtgtgtgta      3840
     tgtcttagct tggattgtgt tgtataatat tgttkgtaat tcttgtatng ttttgaaatt      3900
     gttcttaatt aagtgcagag gaatgtga                                         3928
//
ID   Gypsy-1_PPo-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-110
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2966-2966 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 110 BP; 22 A; 27 C; 24 G; 30 T; 7 other;
     tgtaggtacc tgcatttcas cggtcgggtt ataccaatka wtgtacgtgc ttwagkcagt        60
     cggwtwatac atctcggacc tgacgcccgc gttttatttc ggacaccaca                  110
//
ID   Gypsy-1_PXu-I repbase;    DNA;    INV; 3988 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio xuthus: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PXu-I.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3988
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2953-2953 (2015).
XX
DR   [1] (Consensus)
XX
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..3662
FT                 /product="Gypsy-1_PXu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MGMXXGXEKEKIXAEDLSGLTLARAVEXAENIRCARA
FT                 GAAXAAAAXXVVXAPXXVLCKIGHSNKCGLRVSERRSEKVQCSECGYFNHR
FT                 TPECRFFNHTCKKCKQTGHLRRVCKKVNSVTSAVTSEMGENDDGGELYHIR
FT                 SFMGEPMVECVILNGVKLQFEIDSGSAVTVISEVTFKRHFHVSLSPSNKKL
FT                 MGYTGQRIHCLGVMRASQLSFSGVTRAIDVYVVRGGGPALLGRDFISKFNL
FT                 ELAPVKYCGSSVSIEEFQARFSKTFSDNLGCFNKYKIKLFLKENSKPTFFK
FT                 ARPIAFALREKVTDELNRLVDLGVLKPVDHSEYASPIVPVLKRNGSVRICA
FT                 DYSVSINKQLIVEQFPLPTVNELFSKLHGGEQFTKLDLSSAYNQLCLDEES
FT                 QKLTCINTHRGLYQYTRLVFGLSSAPAIFQRAMETVLSGLDGVLCLLDDIL
FT                 ITGRNREEHLTRLSAVLQRLEEAGLTLQKDKCEFFKDEINYLGYVINKNGL
FT                 KKSPEKVKAIINAPRPSNVSQLQSFLGLANYYRNFVPGASMMLSPLYELLK
FT                 KNSKWKWTKIHSDAFSSIKKCLASDSVLAHFDQRAKLILTVDASPTGLGAI
FT                 LSQVGADGAERPVSYASRTLTPAENRYSQIQKEATAIIFGVRRFHQYLYGR
FT                 SDPFVLRTDHKPLITIFGPHKGIPEVSANRLQRYAMFLSAYNYVIEYVRSA
FT                 DNSADYLSRASLAGAGERGAGTTEAGRASCADAAAALCDRAAYVCFVVDGT
FT                 LPTTVSELRHETSKDIILSRVVNHVLNGWPNKVADLKLKPYFLCRNQLSVE
FT                 NGCLMRGHKVIIPSSLRKKVMDELHTSHLGIVKTKAEARSRFWFPGVDDAI
FT                 EHLIGSCEVCTRLRPSPPRTKLAPWKFPPQPFYRVHIDFLGPLNGRSYLVV
FT                 VDSHTKWVEVYDMNANTTSNAVVERLYEYIARYGLPNTIVSDNGPSFASQE
FT                 FSRFCVGNGISHLTTPAYHPASNGQAESFVKVVKKGIKSSVMSSRTAKECK
FT                 LRLLQFLFDYRNSIHSTTGFSPAELVYGRKLRSRLDLINPRAPPSSCGALA
FT                 DVVNDRQQSQIVAHGGKNTSFFSPGEHVLYKKFSSNNKFTWHKGTVLRRLG
FT                 KVLYVIQDNATLSTFKKHKNQLWLCKADYTKTNLNMSDV"
XX
SQ   Sequence 3988 BP; 1022 A; 885 C; 1076 G; 958 T; 47 other;
     cgctgccsaa ggagctmcag gaggtgccct acsaggatat cctwggwcts ctggacgccc        60
     acttcacwcc gaagcgcgtm ggsttcggcg agcgkcacaa cttctacgcg gcagtkcagc       120
     agsctwcsga gtcgtttacg caatgggcgg ckcggctgcg kgggctcwcg gcwmactgcg       180
     gsttcagcag cctmgaggaa gctctccksg accgsttcat catgggcatg cwgcmmggam       240
     tcgagaagga gaagatctwc gccgaggatc tgagcggcct gaccctggca agggckgtgg       300
     agcwggcsga gaacatcaga tgtgcgcggg cgggagccgc cwgcgcagcc gccgcgascg       360
     smgtcgtckc cgcscctmca gamgtgctgt gcaagatcgg acattcgaat aaatgtggac       420
     taagagtgag cgagagaagg tcggaaaaag tgcagtgttc cgagtgtggc tattttaacc       480
     acaggacgcc agagtgtcgt ttctttaacc atacgtgcaa aaaatgtaaa caaacgggtc       540
     acctccgacg cgtgtgtaag aaggtgaact cggtgacgtc agcggtgacg agcgagatgg       600
     gcgagaacga cgatggcggt gagttgtatc atatccgatc ttttatgggg gaacctatgg       660
     tggagtgtgt catattaaat ggggtcaaat tacaatttga aattgacagc gggtccgcgg       720
     taacggttat ttccgaggtt acgtttaaac gacattttca tgtgtcgttg tcgccgtcga       780
     ataaaaagtt aatgggttac acgggccaaa ggatacattg tttaggtgtt atgcgtgcgt       840
     ctcaactgtc gttcagtggg gtcacccgcg ctatagacgt atacgtggta cgtggcgggg       900
     gcccggcact tctcggcagg gattttatct cgaagttcaa cttagaacta gcgccggtaa       960
     aatattgtgg gtcgtcggtc tcgatagaag agtttcaagc tcgtttttcc aaaacatttt      1020
     ccgataattt aggttgtttt aataaatata aaataaaatt atttctaaaa gaaaattcga      1080
     agccgacgtt ctttaaagcg cgacccattg cattcgcact tagggaaaag gttacagacg      1140
     aattaaatag gttagtcgac ctcggtgtcc tgaaacctgt tgaccactca gagtatgcgt      1200
     cacccatcgt gccggtgcta aaaaggaacg gctccgtaag aatatgcgcc gactactcgg      1260
     ttagtataaa caaacagctg atcgtcgagc agtttcccct gccgactgtc aatgaactgt      1320
     tctcgaagct tcacggtggc gaacagttta cgaagctgga cttgtcgagc gcgtacaatc      1380
     agctgtgtct cgacgaagag tcgcagaagc tgacatgcat taacacgcac cgggggttgt      1440
     accagtacac gcggctcgtg tttggtctgt cctcggcccc ggccatcttc cagcgcgcca      1500
     tggagaccgt gttatcgggc ttagacgggg tgttgtgtct cctcgatgat atattgatta      1560
     caggccgtaa tagggaggag cacttgactc gacttagtgc cgtattgcag aggctcgagg      1620
     aagcggggct aacactacaa aaggacaagt gcgaattttt taaagacgaa attaattatt      1680
     taggttatgt gataaacaaa aatggtctta aaaaatcgcc tgaaaaagta aaggccataa      1740
     taaacgcacc taggccgagt aatgtgagtc agttgcaatc gtttttaggg ctagcaaact      1800
     attataggaa ttttgtaccc ggtgcatcaa tgatgttaag tccattgtat gaattactaa      1860
     aaaagaatag taaatggaaa tggacaaaga tccactcgga cgctttctct tctattaaaa      1920
     agtgtctagc gtcggattcg gttttggccc attttgatca aagggccaaa cttattctaa      1980
     cggtcgacgc gtcccccacc ggtctcgggg cgatattgtc gcaagtgggg gcggacggcg      2040
     cggagcggcc ggtctcatac gcgtcgcgca cactcacgcc cgccgagaac aggtactcgc      2100
     aaatacaaaa agaagcgact gcgatcatat tcggggtgcg tcggtttcac caatacttgt      2160
     acggtcgatc ggaccctttt gtcttacgaa ccgaccacaa gccattgatc acgatcttcg      2220
     gtccgcataa ggggattccg gaagtgtcag caaataggct gcaacgatac gcgatgttct      2280
     taagtgcgta taattacgtt atagaatatg ttcgcagcgc agataacagc gcggattatc      2340
     tgtcccgcgc gagcttggcg ggggcggggg agcgcggcgc ggggaccacg gaggcggggc      2400
     gcgcgtcgtg cgcagacgcc gccgcggcgc tgtgcgacag ggccgcgtat gtttgtttcg      2460
     tggtggacgg aacgttgcct acgaccgtta gcgaattacg tcacgaaaca tccaaggata      2520
     ttatattgtc ccgcgtcgta aatcatgtac taaacggctg gccaaataaa gtagccgatt      2580
     taaagttgaa gccgtacttt ttgtgtcgaa atcagctgtc ggtagaaaac ggctgcttaa      2640
     tgaggggcca taaagttata ataccaagtt cattgcgtaa aaaggttatg gacgaattgc      2700
     atacctccca tttaggaata gttaaaacga aagcggaagc gaggtcgcga ttttggttcc      2760
     cgggcgtcga cgacgcaatt gaacatttaa ttgggtcgtg cgaggtgtgc acccggctga      2820
     ggccgtcacc gccgcggacg aagctggcgc cgtggaagtt tcctcctcag ccgttttacc      2880
     gggtgcacat cgacttctta ggcccgctaa atggtcggtc gtatttggtc gtcgttgact      2940
     cgcacaccaa atgggtcgaa gtgtacgaca tgaacgcgaa cacaacttca aatgcagtag      3000
     tcgagcggtt atacgagtac attgcgcgtt atgggttgcc gaacacgata gtgagtgata      3060
     atggaccctc ctttgcctcg caagaatttt ctaggttttg cgtaggaaac gggattagcc      3120
     atttgacgac tccggcgtac cacccggcca gcaatggcca ggcggaaagt ttcgtaaagg      3180
     ttgtgaaaaa aggcattaaa agtagcgtca tgtctagtcg tacagcgaag gaatgtaagt      3240
     tacgtcttct ccagttcctc tttgactatc gcaactccat tcactccacc acagggttct      3300
     ccccagccga gctggtgtac gggcgtaaac tcaggtcgcg attggattta attaatccca      3360
     gagcaccgcc atcctcgtgc ggcgcccttg ccgatgtggt aaatgatagg cagcagtcgc      3420
     aaattgtagc ccatggtggg aaaaatacat ctttcttctc tccaggtgaa catgttctat      3480
     ataagaagtt tagtagtaat aataagttca catggcacaa aggtactgta ttacggcgac      3540
     tgggcaaagt attgtatgtt atacaagata acgcaacttt aagtactttt aaaaaacaca      3600
     aaaatcaact gtggttatgc aaagccgact ataccaaaac aaatttaaac atgtcggatg      3660
     tatgatgtcg atgatgagat attagatggt atcccaacat cgccaacatc ctccgaacag      3720
     ccagggtgcc gtacaagata gcagtgatag ggacctatct gcgggggaag ggaggaggca      3780
     tgctcgcctc cggtcacacc gcctatcaac catcccaatg taacggtagc tcggggggtt      3840
     aggcgcccta ggcagtctga ttgattagag tgttwwwgtc sttatcttta attgtgttag      3900
     tcataagctt ctgtatgtaa taattgtgta tkgtgtkcaa ttctttagat tttaagtaaa      3960
     atgtatgtcg catctaawgg gggagaga                                         3988
//
ID   Gypsy-1_PXu-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio xuthus: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PXu-I;
KW   Gypsy-1_PXu-LTR.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-128
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2954-2954 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 128 BP; 33 A; 33 C; 26 G; 36 T; 0 other;
     tgttgtatat gcgcttgcac agcgcttgtt tccgaacgag cggcgaattc cgccgttagt        60
     gtgacagcta cttaaataaa cagtctgcgc taagctagct atcgtttcac tactcccaat       120
     acataaca                                                                128
//
ID   Gypsy-1_RP-I repbase;    DNA;    INV; 6135 BP.
XX
AC   ACPB02032162;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_RP_;
KW   Gypsy-1_RP-LTR; Gypsy-1_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6135
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02032162; Positions    1241    7375.
XX
CC   Positions [3764-4243] - Integrase core
CC   'GATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..1163
FT                 /product="Gypsy-1_RP-I_2p"
FT                 /translation="MPLTDPTMEALRREVEELRRANRELQTLDEERLRMEG
FT                 ELTTLRTMVGTDGPSLASERESTGHSRRREMGLQALIKPWSGETGAPPAKD
FT                 FLNEIEMVAESGAWTDHDKRLICKLKTTGAAAVFVSSHPIFSAAVSSFEDY
FT                 KRAILERFQDHRTPEQNLLALNSVSQRRGEGVREFADRCRQLGEFATSHTG
FT                 SGEQKQWERNFMERVVLAAFIQGLAGEPGRQLRFNPPTGLAEAVKRAHLVE
FT                 EAESGPGIARSTLERGIYAIARNADSSYGRRGRCFNCAQEGHFARECPRPY
FT                 QSPPREWKSSGTRGRVREPRARGVKCYTCGELGHICRMCPKRATPGSVRPD
FT                 YVVRKSNYLEAAPKSLLPQSAPPAGGMPPRGQDTGL"
FT   CDS           1370..5059
FT                 /product="Gypsy-1_RP-I_1p"
FT                 /translation="MWRGQTIAQEFLIAEIDVEGDGILGIDGMAALKMRLD
FT                 MRTLEFEGDEGKGALDGRENVLLVGKAEPQSRFERNEFPEVEAERDESGDI
FT                 YLVAAEKITIPPRCEVLVRGRASGWRSGATVLVEPYPTETNRDWCVGRGIS
FT                 QVVHGAVWVRIVNVSQTEVMVGKSERLGWVTEIETQGSEWVGVCQESGGVP
FT                 RARKGLGKLLGDKLGHLRGEERDLLATVLSQYEDVFQDPDTSSLGCTSQIK
FT                 HTINTGNATPIAKRPYRVPYHQRETMKELVDDMLTKGVIEPSDSPWSAPVV
FT                 LVRKKTSDGSVKYRFCTDFRALNAVTKVPVYPLPNINETLESLGRSRYFST
FT                 LDLASGYHQIEIATEDQAKTGFSTPEGHYQYRRMAFGLAGAPATFQLLMDR
FT                 LLADLKGVTCFVYLDDVIIHSATIEEHAERLSGVLSKLREAHLVVNLAKCQ
FT                 FATERVCYLGHVVSRRGVQVDPEKVTAVKDFPPPGNVRELRSFLGLVGYYR
FT                 RYISGFAEKARPLTYLTRLDQRFQWGEAEEQAFKGLKDELCSDSVLAYPDF
FT                 SLPFILATDASGVALGAVLSQLQDGAERPIAYASRQLNKAEQNYSTTEREM
FT                 LAVVWATKHFRCYLYGRPFNLITDHAALRWLLTVKDPSSRLTRWQLRLAEF
FT                 QYEVFHKPGRKNSNADALSRRVATINGEADSGRGTIRALQLADADCVHFKN
FT                 TNTAQCVMDLDGLLYRFAGGNEPYQLMVPEPMRETILQECHDSPFAGHPGL
FT                 ERTLALLRQGYYWPTMSQDAKRHIEKCRSCLERKTPQQLRVPLQVPYAAGR
FT                 PFEQVSMDIVGPLPRTREGNMYLLTMIDHLTRYAEAVPLKSQTAQETAQKF
FT                 VNHLVVRHGAPSRLLTDQGRNFTSALVRDACDTLGIKKLFTTAYHPQSNGR
FT                 VERFHRTLVDALSHFVRRDGEDWDRWVPYVLMAYNSTPHSATGFTPNYLLY
FT                 GRELPRPSALDPRPRQEVDQETSYAEALRGRLREAHRIAAETTERAFEAQA
FT                 AQYNKKARVRSLVEGQWVYLHNPAGRRGEAQKFRSRGRGFRVQRSITDVTF
FT                 EIAMGDGSTRMVHINRLKPVVVEGIPQETTEEDVPTSLSQNLGAEDTHDLF
FT                 YEGLSLEGAPGIVGEVAGDGARNAESGQTAESIEEEQTEINTSGGDDLYAG
FT                 VNLRPRGYQRADDRTETTELATELNVGELSPSAYSPPDDTIRDPTYTPVGT
FT                 PRLPCTRSSYVLRSQRSRED"
XX
SQ   Sequence 6135 BP; 1535 A; 1483 C; 1885 G; 1232 T; 0 other;
     attctggtgt cagaagtggg atctctatgc cactaacgga ccctaccatg gaggctctga        60
     ggagggaggt ggaggaatta cgccgagcca atcgtgagtt acagacccta gatgaggaac       120
     gtttacgcat ggagggggag ttaaccacgt tgaggacaat ggtaggcacg gatggccctt       180
     ccttagcgag cgagcgtgaa tcgactggtc attccaggcg gagggagatg ggcttacaag       240
     ccttgatcaa gccatggtcg ggggaaaccg gggcgccccc agcgaaggac ttcctgaacg       300
     agatagagat ggtggcggag agtggtgcct ggacagacca cgataagagg ctgatctgta       360
     agctaaagac gacaggcgca gctgctgtgt ttgtgtcgag ccaccctata ttttccgctg       420
     cggtgtcctc ctttgaggac tacaagagag ccatcctgga aagattccag gaccaccgta       480
     cccctgagca aaacttactc gcgctcaact cagtgtccca gcgtcgtggg gagggagtcc       540
     gagagtttgc ggatcgctgt aggcaattgg gggagtttgc tacttctcac acggggagcg       600
     gggagcagaa gcagtgggag cgcaatttca tggagcgagt ggtcctcgct gcgttcatcc       660
     agggcctcgc gggtgagccg ggacgccagt tacgctttaa tccccccaca ggcttggcgg       720
     aagctgtgaa gcgagcgcat ctggttgaag aggcggaaag cgggcccggc attgctagat       780
     ccaccctgga gagggggata tatgccatag caagaaacgc ggatagtagc tatgggcgcc       840
     gggggagatg tttcaactgt gcacaagagg ggcattttgc gcgggagtgc ccccgcccct       900
     accagtcgcc ccctcgtgag tggaaaagct cgggtactag gggtagggtg agagaaccac       960
     gggcgagggg tgtgaaatgt tatacctgcg gggaattggg gcacatctgt aggatgtgcc      1020
     cgaagagagc tacacctgga tccgtgagac cagactatgt tgttaggaaa tccaactatt      1080
     tggaggctgc cccaaaatcc ctcctcccgc agtcagcccc acctgcggga gggatgccac      1140
     cacggggcca agatacagga ttataaacgt tgccactccc agctccagat tcatcaggat      1200
     cccggtgaag ctctcaggag agaccaggac cttgctcgtg gatacggggg cgggtgtttc      1260
     catcttgcgg caaccagtac cgggggttcc gttgttagag agtggggtgg tagcgcgggg      1320
     tgtgacgggt agccccgttg gaatcaaggg agtacagcgg ttagacttga tgtggcgggg      1380
     tcaaaccatc gcccaggagt ttttaatagc ggagattgat gttgagggag atggcattct      1440
     agggatcgat ggtatggctg ctttgaagat gagattggat atgcggacgc ttgaattcga      1500
     aggagatgag gggaaagggg ccttggatgg ccgggagaat gtgttacttg tagggaaggc      1560
     tgaacctcaa tccagatttg agagaaacga gttcccagag gtcgaggcag agagagatga      1620
     gtcgggagac atatacctag ttgcggcgga gaagataact atcccgcccc gttgcgaagt      1680
     gttggtgcgt ggtagggcct ctggctggcg ctcaggcgcc accgtgctgg tagaacccta      1740
     cccaacagag accaatcggg attggtgcgt aggcagaggg ataagccaag tagttcatgg      1800
     cgccgtgtgg gtgcggatag taaatgtatc gcaaacggaa gtgatggtag ggaaatctga      1860
     gaggctaggg tgggtgacgg aaatagaaac tcagggaagc gagtgggtcg gcgtttgcca      1920
     agagagtggc ggggttccca gagcccgtaa aggattggga aagctccttg gggacaagct      1980
     aggccattta cggggggagg aacgagacct cttggctact gttctatccc agtacgagga      2040
     tgtttttcag gacccggaca catcctcgct agggtgtact tcccaaatca aacacaccat      2100
     taatacggga aatgcgaccc ctattgcgaa gcgcccttac cgggtgccat accaccaacg      2160
     tgaaactatg aaggagctgg ttgacgacat gctgacgaaa ggcgtaattg aaccgtctga      2220
     cagtccatgg tcggcaccag tggtgttggt acggaaaaag acctccgatg gatcggtgaa      2280
     gtaccggttt tgtaccgatt tccgggcgtt gaacgctgta acgaaggttc cggtttatcc      2340
     gctaccaaat atcaatgaaa cgctagaaag tctgggaagg agccgctatt tcagcacctt      2400
     ggatctggcc tcgggctatc accagattga aatagctacg gaggaccagg caaaaaccgg      2460
     attttccaca cccgaggggc attatcagta ccgtcggatg gctttcggcc tggcgggggc      2520
     tcctgctacg ttccagttac tgatggaccg gctattagcg gaccttaaag gagtaacatg      2580
     ctttgtatat ctggatgatg tgatcatcca tagcgcgacg atcgaagaac atgccgagag      2640
     actaagtggg gtgttgagca aactgagaga agcgcaccta gtggttaacc tcgccaagtg      2700
     ccaattcgct acggaaaggg tttgctactt agggcacgtt gtgagtcgga ggggagttca      2760
     agtggatcct gagaaagtaa ccgctgtgaa ggactttccc cctcctggca atgttagaga      2820
     gctacgctcg tttctagggc tagtaggtta ctaccggagg tatatctcag ggtttgcgga      2880
     aaaagcccga cccctaactt atctgacacg cctagaccag cggttccagt ggggagaggc      2940
     agaggaacaa gcctttaagg gcctaaagga tgagctatgc agcgattcgg tgttagcata      3000
     tccagatttc tcactaccct tcattttagc tactgacgct tcaggagttg ccctcggggc      3060
     ggtactgtct cagctacaag acggggcgga acggcccatt gcttatgcaa gtcgccaact      3120
     gaataaggca gaacaaaatt atagtacgac cgaacgggaa atgctagcgg tcgtctgggc      3180
     cacgaaacac tttaggtgtt atttatacgg ccggcccttc aacctgatca cggaccatgc      3240
     agcgctgcgg tggcttctca cagtgaaaga cccatcatcg cgtctaactc gatggcagct      3300
     ccgcctagcg gaatttcagt atgaagtgtt tcataagcct gggcgtaaaa actccaacgc      3360
     cgatgcgctg agtcgacggg tggccacgat aaatggggaa gcggattcgg ggagagggac      3420
     gatccgggcg ctgcaattag cggacgcgga ctgtgtgcac tttaagaaca ccaacacagc      3480
     tcaatgcgtc atggatctgg acggactatt atatagattt gcggggggaa acgagccgta      3540
     ccaactgatg gtaccagagc caatgcggga gaccatttta caggagtgcc atgactcccc      3600
     tttcgcggga caccccggac tagagaggac cctggctctg ttgaggcaag gctattattg      3660
     gccgactatg tctcaagatg ctaagaggca tatagagaag tgccggagtt gcctggaacg      3720
     gaagacgccc cagcagttac gagtacccct gcaggtacca tacgcggccg ggcgcccctt      3780
     tgagcaggtg tccatggaca tagtgggacc cctaccacga acaagggagg gtaacatgta      3840
     cctccttacg atgatcgacc atttaacgcg ctacgccgaa gcagtaccgc taaaaagcca      3900
     aacagcccaa gagacggccc aaaaatttgt gaaccacttg gtagtccgac atggagctcc      3960
     tagtcggcta ctaactgatc agggaagaaa tttcacctcg gccttggtaa gggacgcctg      4020
     cgatacgctt ggaataaaga agttgttcac gaccgcttac catccccaga gtaacggaag      4080
     agtggagagg ttccaccgca cgttggtaga tgcgttatcg cattttgtgc gccgcgatgg      4140
     ggaagactgg gacagatggg tgccctacgt attgatggca tataatagta cgccacattc      4200
     tgcgacggga ttcaccccga attatctcct ttacggccga gagctgccgc gccctagcgc      4260
     actcgaccct aggcctcgtc aagaggtaga tcaagaaacg agttatgcag aggcattacg      4320
     tgggaggtta agggaagcac accggatagc cgctgagacg accgagcggg ccttcgaggc      4380
     acaagcggct cagtataata aaaaggcgcg ggtacggagc ttggtggaag ggcaatgggt      4440
     ttacctacac aaccccgctg gacgccgagg agaagcgcag aagttccgca gccgtgggag      4500
     gggctttcgc gtacagcgga gtatcacaga tgtgacattt gagattgcga tgggcgacgg      4560
     aagcactcgg atggtgcata taaatcgctt gaaaccggtg gtggtggagg gaatccccca      4620
     agaaaccacg gaggaagatg tccccacctc cttaagccag aacctaggag cggaggacac      4680
     gcacgacttg ttttacgaag ggttgtcact cgaaggggcg ccggggatcg tgggagaagt      4740
     tgcaggggac ggcgcaagga acgccgagtc tggacaaact gcagaatcca tcgaagagga      4800
     gcagactgaa attaacacct caggaggtga cgatctttat gcaggggtca acttgaggcc      4860
     gcggggttac cagcgggctg atgacagaac ggagacgaca gaactagcca ctgagctgaa      4920
     cgtgggagag ctctccccgt cggcgtactc acccccagat gacacgatac gagaccctac      4980
     atacacccca gtcggtacac ctaggcttcc ctgcactcgc tcgtcctacg tgttgcgttc      5040
     ccaaaggagc cgggaggact gatgaagtaa tccggtttag gaaactattg ggcggtggtc      5100
     ggatgaattt ggttgagcag cggaactgag tccccgaacg agggacgagt gctgctgacc      5160
     cgggaccaat gacaaaatta gccaactagc cttgacaacc acgatgggag gcacccgcac      5220
     agccattagg gaattaaggg taaccacctc taacctcatg cacctcctct tcctcacgtc      5280
     ctccggaatc ttgagatcaa taccttggag gcaaaggtgg aattgcggtc gctcgagggt      5340
     gccctcagca ccctagccag gagaaagtta gcaggctatt ggccccaagt gactgagtag      5400
     gatagtgtat aaacagtcag atattatccg agagactatg gttcgtgtcg ggaaccgctg      5460
     ccggcggata tgtaccatta ctacgacatc gctgagatag acgctgcctc cacacatgac      5520
     gacattcaca tcttggtgga cataccctcg gtgaccaaag gaagatatat tttgacaact      5580
     accgggtgga ccaatacccg tgaaggatcc gataactgga ctatacctgc tgctacaacc      5640
     taaggccgac ttcacactgg tgggagtaga ctgagagagc ttcgtgtttc tgaaaacgga      5700
     ggacctcagg cactgttggg gaaggagtcc actaatctgc ccagcacgat ttccggtctt      5760
     ctccctccat agaccgtctc gccatacact actgttcaag aaactataag agaaggcgaa      5820
     ccccttgtga gcgtggcgga tgctggtaac gagattcaag cttacgtaga gctggaggga      5880
     ggagtcgaac gagtggttat acagtttgct cgagccagtc aagctgaatt gcacctccgt      5940
     ggcatgaggg cacccaccga cacagagaga tcctggagac aaccaaccag cgaatgcagg      6000
     ggcaccattt gttccctatc gtccgccgag cgtgaagacg cgaagctccg gagagcccgg      6060
     tggagagttg ggaagtgaca agcgagtggt gggtcctccg caaggcggta gaacccactt      6120
     taacgggggg gtaag                                                       6135
//
ID   Gypsy-1_RP-LTR repbase;    DNA;    INV; 695 BP.
XX
AC   ACPB02032162;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_RP_;
KW   Gypsy-1_RP-I; Gypsy-1_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-695
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02032162; Positions     546    1240.
XX
SQ   Sequence 695 BP; 206 A; 95 C; 161 G; 233 T; 0 other;
     tgtaaaggga gagcatttaa tttgtaaata ataattgaat aattagtagg aaaaaatgca        60
     attgttaagt taaactgctg acggcacggc tggtagcggc cgagagcaat gtaccgcgtg       120
     agagagagag agagaatagc gagcgcgtgg tgtatagtgt atagacaccg gcagagttag       180
     ttagagtgtg tgagaggaaa caagtgttat gcgtttgatg ggattgtttt gctgtgagta       240
     ttgaacataa atttttacgc attgcttccg gccgaggcta actgttgccg tagtgaggga       300
     ggagtacatt tgctagagtg tagattaaca aaagataacc gatagtatta ataataataa       360
     taataataat aataataata gtaataataa tggaatgttt gagaataagg gcccaacttt       420
     gttgatttaa tttataattt gcctatttaa tcttaatttt atgttatctt atagtttctt       480
     cagtttcgtt tatatttcta ttgttaatta tgtttttgga agtattagtt tggttttgta       540
     ttaatgagct cgactctttg tatgcgatta tctaattggt gtattgggac caacattaat       600
     cagtgtattc atagccctga cgagttattt gtacccccct gctgagcgag cgaaattccc       660
     cttgccctga tcgcccttaa cggcgctcgg tcaca                                  695
//
ID   Gypsy-1_SI-I repbase;    DNA;    INV; 4904 BP.
XX
AC   AEAQ01029017;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_SI_;
KW   Gypsy-1_SI-LTR; Gypsy-1_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4904
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01029017; Positions    5428     525.
XX
CC   Positions [2246-2668] - Reverse transcriptase
CC   Positions [3722-4195] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           287..4594
FT                 /product="Gypsy-1_SI-I_1p"
FT                 /translation="MDRQQLEDLSHAELQTEVRRYGLEPQATREALIDQIM
FT                 SHLERNGPLNDLRQDATTALQAAGSFGSTSTSGVQSGSSREALPQICAMFA
FT                 EQMKQQQAFMQQLIAAVTAGQSRSQPAPSLPTPPTVVQATLPPRNTILSAV
FT                 SPGQAIKLLASQVPEFSGAEDDDVNSWIQKVEQVSRIHGASDDITLLAATG
FT                 KLTKIARRWFDSKTGVVNQTWPIFKQAVISRFQRETLVQVTLHKVEARRWN
FT                 YPRETFQEYAMDKIDMLHSLNLPDRDVINYLVSGINNMAIKSAAAALPVDN
FT                 VDDFLKRMHNITASFSEPFKKAFVPPQKIEKDKAKPINGTSVRNSPAEKPV
FT                 KDLFCVYCKRTGHVRDDCFRLKRKEQGQRTATPSTPATVAAAKEDDPSASP
FT                 PQVVGAVSNLDRTLEISDTHLKVVAINGRPCNLIALLDTGSPCSFVHTTVF
FT                 ERIFDRSSSSLVKANRSLVAINGLPIKTMGTVASSIQFESLPDFTGEIEFL
FT                 VLQNNVFTVDLVIGRDFLRTHQITVLYSPKADTEENKLELLQHVASADVVD
FT                 ETENSILSYMASVEIDFDGETKKSLLSIIDEVENTEVAPVKDDYAVRVSLK
FT                 DDSTYAFAPRRFAWAERQQIREITDDLLKRGIIKHSVSPYCARVVPVRKRN
FT                 GALRLCVDLRPLNSRVNKQKYPFPIIEDCIARLGNNTIFTSLDIQDGFHNI
FT                 PVHPEHTKYFSFATPDGQFEFTRLPFGYCEAPAEFQKRLVHILQPLIREDR
FT                 VLVYIDDILIPSASVTDNLATLKEVLLLLKRHAFQVNYKKCHFLKTTIEYL
FT                 GYVISPNGITLSPRHVEAVLNFPLPKNINDLQRFLGLTGYFRKFIQDYASI
FT                 AKPLRNLLRKAIDFNFDSSCLEAFNALKNKLISYPVLRVYNPKVETELHTD
FT                 ASAHAVAGILMQKQESGKWAPIAYYSQATNQAEAKYHSFELEMLAIVKSVE
FT                 RFHLYLYGLDFTIVTDCNALVYAVNKAHLNPRIARWALRLQNYKFKVVHRA
FT                 GHRMTHVDALSRISAYVGAMPIERELEYKQLLDDRLKILAEELEFAENEKF
FT                 ELIDGLVFRKCADKPRFVIPDSMINNIIRIYHDEMAHCGVEKTVQGIGSNY
FT                 WFPSLRKKVRSYVDNCLTCLTANSSVHTREGEMQEVDSPKRPFQIVHCDHF
FT                 GPLTDTSQGFKYILVLVDAYTRFTWLFPAKTTSSKETIKHLLGVFNVFGFP
FT                 NTLVSDRGTAFTSQEFLDFTNSKKIYHRLVAVAAPWSNGLVERVNKFLKSS
FT                 LKKLTEEPKTWNIHLDKIQYVMNNTHHASLNASPSKLLLGYDQKRHADADI
FT                 VESLNQIARVELCCNEERENMRTIAEEVSNKIRNYNKIYYDKKHAKPTKYQ
FT                 IGDYVLIRDTASKPGEDKKLKANYKGPYVVAKILNKNRYVIKDIPGFNITS
FT                 RPYDSILSPDRLKPWIKPVNSE"
XX
SQ   Sequence 4904 BP; 1472 A; 1048 C; 1081 G; 1303 T; 0 other;
     acatatcaga agtgggattc acctcgtggt gctgtgcgga aattcgtgcc ggtcgcgttc        60
     gcttttgtct cgtggtctcg tgccgttgtg ctgctcacag agcagagagg atcgaccgcg       120
     tggtagctac gcgccgccag ttttttttaa aaagaaaccg attatctcgt ctcgtggtgt       180
     cgtgccgttg tgctgctcat agagcagaga ggtccgaccg cgtggtacac cacgcgccgc       240
     cattttaagt ttcattcaaa gcgtctccca cgtgtcacgc catacaatgg atcgacaaca       300
     gttggaagat ctttcgcatg cggagttgca aacagaggtt agacgctacg ggttagagcc       360
     acaagccacc cgtgaagctc ttatcgatca aattatgagc catttggaaa gaaatggccc       420
     gcttaacgat ttgcgccagg atgccaccac ggctctgcaa gctgccgggt cgttcggttc       480
     gacttccact agcggtgttc agtcaggctc atcgagagaa gccttgccgc agatttgcgc       540
     aatgttcgcg gaacaaatga agcaacaaca agctttcatg caacaattaa tagctgcggt       600
     gaccgcgggg cagagccgtt cacagcctgc tccctcgtta ccgacgccac cgaccgtcgt       660
     acaagctaca cttccgccga ggaatacgat cctttcagcg gtgtccccgg gacaggcgat       720
     taaactacta gcgtcacaag tgcccgaatt cagtggagct gaagatgacg acgtgaacag       780
     ttggatccag aaagtcgagc aagtgtctcg tatacacgga gcctcagacg acatcacatt       840
     gttagccgcc acgggtaaat taaccaaaat tgcccgtcga tggtttgatt ccaaaacagg       900
     tgtcgtaaat cagacctggc ctatttttaa gcaagcggtg ataagtcgtt ttcagaggga       960
     aactcttgta caagttacct tgcataaagt tgaggctcgt agatggaact atccaagaga      1020
     gacgttccag gaatatgcta tggataaaat agatatgcta catagcttaa atcttccaga      1080
     tcgagatgtt ataaattatc tcgttagtgg cattaacaat atggccatta agagcgcagc      1140
     agcggcgcta ccagtggaca acgtagacga cttcttgaaa aggatgcata acatcacggc      1200
     ttccttctcc gagccgttta agaaagcttt cgtgccgcct caaaaaatag agaaggacaa      1260
     agcgaagcca atcaacggaa ccagtgtgag gaacagcccc gcagagaaac cagtcaagga      1320
     tctcttctgt gtgtattgca aacgcacagg gcacgttcga gacgactgtt tcaggctgaa      1380
     gcgcaaggag caaggacaga gaacagcgac tccttcaacg ccagccacgg tggcggcagc      1440
     caaggaagat gacccctccg cctctccacc gcaggtcgtc ggcgcggttt cgaacttgga      1500
     cagaactctt gagataagtg acacacatct gaaagtcgtc gccattaacg gtagaccttg      1560
     taatttaatt gcgctattag atacaggcag tccctgttct ttcgtacaca caaccgtttt      1620
     tgagagaatc tttgatcgat cgtcgtcctc ccttgttaag gctaatcgtt ctcttgtagc      1680
     tattaatggc ttaccgatta aaacaatggg tacagttgcg tcgtcaatcc aattcgagtc      1740
     gttacctgat ttcacagggg aaatcgaatt tctggtttta caaaataacg tatttactgt      1800
     agatcttgtt atcggtcgcg attttttgcg tacacatcaa atcaccgttc tgtattctcc      1860
     aaaagcagac acggaagaaa ataaattaga gttgctacag catgttgcgt ccgcggacgt      1920
     ggtggacgaa acggagaact caatactttc ttatatggca agcgtggaaa ttgattttga      1980
     cggggaaaca aaaaagagtc ttttgtccat aatagacgag gtcgaaaata cggaggttgc      2040
     tcccgtaaag gacgattatg ccgtcagggt ttctcttaaa gacgactcaa catatgcgtt      2100
     cgcccccaga cgatttgcat gggcggaacg acaacaaata agagagatta ccgatgatct      2160
     ccttaaacga ggaattatta aacatagcgt atccccatac tgtgctcgag tcgtacctgt      2220
     tcgcaaacgg aacggtgctt tacgtttgtg cgtagatttg cgtcctctaa actcgcgggt      2280
     aaataaacaa aaatatcctt tcccgattat cgaggattgt atagcacgtc tgggcaacaa      2340
     cacgatattc acttctttag acatacaaga cggttttcat aatattccag tgcatccaga      2400
     acatactaaa tatttttcat ttgcaacgcc cgatgggcaa tttgaattca cacgtcttcc      2460
     tttcggttat tgtgaggcac cagccgaatt tcagaaacga ctggttcaca ttttacagcc      2520
     tctgataaga gaagatcgcg ttttagtata tatcgatgat attttgatac cgtcagcatc      2580
     ggttacagat aaccttgcaa cattaaaaga ggtattgttg ttgctgaaac gtcacgcatt      2640
     tcaggtaaat tataagaagt gccattttct gaagacaacc attgaatatc tcggttatgt      2700
     tatttcgcca aacggtatca cgttgagtcc gcgacatgtc gaggcagtac taaattttcc      2760
     tcttccaaaa aatattaatg acttgcagcg atttctcggg ttaacgggct atttccgtaa      2820
     atttatacaa gattatgcat ctatagctaa gcccctcagg aatcttttgc gaaaggcaat      2880
     tgattttaat tttgatagta gttgtcttga agcattcaac gcgcttaaaa ataaattaat      2940
     ttcatatcca gtacttagag tatataatcc aaaagtagag actgaattac atacggacgc      3000
     cagcgctcac gcggtagccg gaattctcat gcaaaaacaa gaatcaggta aatgggcgcc      3060
     tatcgcttat tatagtcaag ctaccaacca ggcggaggct aaatatcata gcttcgagct      3120
     ggagatgctt gccattgtta aatcagttga gcgatttcat ctctatttgt acggtctgga      3180
     tttcacgatt gtgaccgact gtaatgccct agtgtacgcg gtaaataaag ctcacttgaa      3240
     tccgcgaatc gcgcgctggg cactaagatt gcaaaattac aaattcaagg ttgttcatcg      3300
     cgcggggcat cgtatgaccc atgttgacgc gcttagtcgg attagtgcct atgttggtgc      3360
     tatgccaatt gaaagagagt tggaatataa acaattacta gatgatcgac ttaaaattct      3420
     agcggaggag cttgagtttg ctgaaaacga gaagttcgag ctaattgacg gccttgtctt      3480
     cagaaagtgc gccgataaac ctcgtttcgt gatccctgat tcgatgataa ataatattat      3540
     tagaatttat cacgacgaaa tggcacactg cggtgtcgag aaaactgtac aagggatagg      3600
     ctctaattat tggtttcctt cgttaagaaa aaaagttcga tcttacgtag acaattgcct      3660
     gacttgcctc acggccaatt cgtcagttca cactcgagag ggggaaatgc aggaggtaga      3720
     cagcccgaag cgacccttcc aaatagtcca ttgtgaccat ttcggtccgc ttacagacac      3780
     ttcacaaggg tttaagtata tattagtttt agttgatgcc tatactaggt ttacgtggct      3840
     atttccagcc aagacaacaa gctcaaaaga gaccattaag catttattag gagtgttcaa      3900
     cgtctttggt tttccaaata ccctcgtttc ggatcgaggt acagctttca cttcacaaga      3960
     atttttagat ttcacaaatt cgaagaaaat ctatcaccga ttggtagctg ttgcggcgcc      4020
     atggagtaat ggattggtag aaagagtcaa taaattttta aaatcttctt tgaaaaaact      4080
     tacagaagaa cctaagacgt ggaacattca tttagataag atacaatacg taatgaataa      4140
     tacacatcat gcgtcgttaa acgcgtcccc gtccaaatta ttgttggggt acgaccagaa      4200
     gcgtcatgct gacgccgata ttgttgaaag tttaaatcaa attgcgagag tcgaactctg      4260
     ctgcaatgag gagcgtgaaa atatgcgcac gattgcagaa gaggtatcga ataaaattag      4320
     aaactataat aagatttatt atgacaaaaa gcacgcgaag cctactaaat atcaaatagg      4380
     agattatgta ttaattcgag acacggcgtc aaagccaggc gaggataaaa aactcaaagc      4440
     gaattataaa ggcccttacg tagtggcaaa aatcctaaat aaaaatcgct atgtcataaa      4500
     ggatattcca ggctttaaca taacgtctcg cccgtacgat tcaatacttt ccccagatcg      4560
     cctaaaaccg tggattaagc cagttaacag cgaatagtta aaaaaaaaaa aaaaatgcgt      4620
     gcggcataga ttaagatttt gttaccaatt atccaaagat tgtaatactt ccaaaggtta      4680
     taatactacc aaagattata atactttgat taatttcagt aagtaacagt aaatgtattc      4740
     aaacaataat gataagtaaa acctcaggcg gtattcagac tgtaaatacg tccatacaag      4800
     aatttccaaa ctgtattcat attgttatat catattgtgt tatatcgagt caataattgt      4860
     caatcatact attcgagacg aatatccgtc agtccggccg aagc                       4904
//
ID   Gypsy-1_SI-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   AEAQ01029017;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_SI_;
KW   Gypsy-1_SI-I; Gypsy-1_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-378
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01029017; Positions     524     147.
XX
SQ   Sequence 378 BP; 71 A; 104 C; 88 G; 115 T; 0 other;
     tgtaagatat ctttaagcta gcgtcgaaac gactcaggct ggctgcagcg ttgcgcgcgt        60
     tgcggctgct tccttaggca ttggccaaag ggatcgcgcc acacttttgc cgttgtgcgg       120
     cgctgtgggc gtgatgcagc acgatggatc tcgggctttt cggttgggtg gtgagatcgc       180
     ggccgtggtg atcgcacgtc tcacttaacc ttttgctgtg tatccgccaa gagaataaac       240
     gagattacgg ttagcatcgt cttcttcctt gcacaggccc tcccttctca ttcgcctcct       300
     tatttaccgt tccttaaacc tatttcctga cactaactaa tattctccct aactataatt       360
     tttattcccc cctttaca                                                     378
//
ID   Gypsy-1_SiCu-I repbase;    DNA;    INV; 4360 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4360
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5030-5030 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..4280
FT                 /product="Gypsy-1_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDPDTSKQQLHTSDIESTDDQQPPKSSKAPEPNPKP
FT                 KKKKPKAQPSTSESSSTSTTTTQLTPHHPISTSSTIIKKIMGTVGVLAPFD
FT                 ASKDDFEMWNGTFENFLVANEISDNARKVGIFLSSVGISTYSLLSNLLAPD
FT                 APSSKKLKELQAALQNHFKPAPKALAERFKFSRRTQKPGETVNQYLASLRT
FT                 LAVSCKFTDLEDRIRDQFIFGLNSEATQRQLFTKDDTISLQDVIAAAVAQE
FT                 AAAVSTSLVRGQQQPEAPTSTEQVHKTSRVKSPNKQHKFQKGNKGNQDNRN
FT                 SQQTDHHQKSKNSGNNKHYSNDNTNRCSGCGSTQHSRSKCPHSNSQCYKCG
FT                 KKGHIAPVCRSSGASSNNHLTVDPFNVNNVTSNGKQLLLIKVKINGVPHNM
FT                 EFDPGCDATMLSEDFWKRELGSPPLQKSTIVYRTYTGETFTPLGQFTASIE
FT                 HNGQLVTHNLPVCKGTSLFGKDFLFKMKIDWESIASQCNHISASANSELQT
FT                 LLQEYDDIFQSPTSTDRIRNFKAQIILKDNATPRFLKARPVPYSQRVKVDK
FT                 ELDEMEATGVITKVETSDWASPLVVVPKADGRIRITGDFKLTVNHQLCITQ
FT                 YPLAVPDDLFATVSGGHTFSKLDGSNAYHQIEIDEASKKFLVVNTHRGLYQ
FT                 YNVLPQGIASSPAIFQQFMDMLLNGIPHTGSFIDDAITTGVTDVDHLSHLK
FT                 EIFARVRKYNYKLSKQKCKFLQQSLEYLGHIISKNGISTCKSKVQTISNIP
FT                 RPTTPKEVLSFMGLVNFYGKFLKDLSTISEPLYRLTRDNVKFVWCDNCERA
FT                 FKSIKQILITSPTLAHYDPSKRLGIAADAAPNGIGCILFQVEQDGTERPIA
FT                 YASRLLSDTERRYSQVEKEGLSLIFSVKKFYKFVCGRPFLLVTDHRPLLSI
FT                 FGPKTQLPSFVATRLHHWALYLSQFQYEVVYRKSADHGNADALSRLIPLPQ
FT                 RPSIAVTDEEATVNFLATQQLETLPITAARIRQATARDPVLAKVQQLILYG
FT                 WPPKLRDEDKPLQSFFTRRQELTIVQGVIMWGIRVVIPSSLQTAILQQLHE
FT                 CHFGIVKMKSLAREHIYWPGIDHDIENIAKSCVSCQQNAPNPPSAPLHPWQ
FT                 FPDKPWQRLHVDLAGPFLNNMWLIVVDAHSKWPEVFNMRQNTTSSAVKQKL
FT                 LECFARFGLPEQVVTDNGRQFTSSEFTSFCKNNSIRNVFSSAYHPRSNGEA
FT                 ERFVRTFKEGMRTTDIPVDLRLQRFLFSYRTTTHCTTGYSPAAVLLNKRPR
FT                 TLLDLLKPDISTAARSSQLNQEIGYNKNVRQREFQPQDVVWVQTNLKGEEK
FT                 WTMGKIKSKTGPVSYIVEVADRDMKRHVDQIRAAISSMPTTSSSSSSHAPA
FT                 DVPPQMTTAIDPESSS"
XX
SQ   Sequence 4360 BP; 1253 A; 1173 C; 864 G; 1070 T; 0 other;
     tggcgacgag gtgttttatt ctacagtctc actttcccca aagtcagttt tggtgaaaaa        60
     attctaagtc ctatcacggg cttatataga ccaaattgcc ccatccacgc tgcacgaact       120
     aaaagttcac attttctctc cacatgagtg atcccgatac ctccaagcaa caactgcata       180
     catcagatat tgaatctaca gacgaccagc aacctccaaa atcttccaaa gcgccagaac       240
     ctaacccaaa accgaagaaa aagaaaccga aagcgcaacc ttccacctca gagtcatcgt       300
     caacttcaac tacaacaaca caactcacgc ctcatcaccc catttcaaca tcttcaacaa       360
     taatcaaaaa gataatggga acagttggag tgctggcacc ctttgacgcg tcaaaggacg       420
     actttgaaat gtggaatggc acgtttgaaa atttcttggt ggccaatgaa ataagtgaca       480
     acgctcgaaa agtgggcatc ttcctctcat ccgttggaat ttccacgtac tctctcctct       540
     ccaacctttt ggctcctgat gctccctcct caaaaaagct gaaggaacta caagctgctt       600
     tgcagaacca ttttaaacca gcgcccaagg ctttagccga gcggtttaaa ttcagccgga       660
     gaacgcagaa gccgggggag acggtcaacc aatacctggc gtcacttcgt acacttgcag       720
     tgagctgcaa atttactgat ttggaagatc ggattcgtga ccagtttatc tttggcctca       780
     acagtgaagc cacccaaaga caactgttca caaaagacga taccatttcc ttgcaagatg       840
     ttatagctgc cgccgtcgct caggaagccg ccgcggtttc cacctctctt gtccggggtc       900
     aacagcaacc tgaagctccc acctcaaccg aacaagtaca caaaacctcc agagtcaagt       960
     ctcctaataa gcagcacaag ttccagaaag gaaacaaggg caatcaagac aatcgcaatt      1020
     cccaacagac cgatcaccac cagaagagca agaattcggg taacaataaa cattactcta      1080
     atgacaatac taatcgatgt tctggttgtg gttctactca gcactcccgg agtaaatgcc      1140
     cacactccaa ttctcagtgc tacaaatgtg gcaagaaagg ccacattgca cccgtgtgca      1200
     ggtcctccgg cgccagcagc aacaaccacc tcaccgtgga cccgttcaac gttaacaacg      1260
     tcacctccaa tgggaaacag cttctcctga tcaaagtgaa aatcaatgga gtcccgcaca      1320
     acatggagtt cgacccaggc tgcgacgcca ccatgctgag tgaagacttc tggaagcgcg      1380
     agttaggatc accgcctctc cagaaatcta ctatagtcta ccgtacgtac actggggaaa      1440
     cctttacccc tcttggccag ttcactgctt ctattgaaca caatgggcaa ctagttacac      1500
     acaacctccc tgtgtgtaaa ggtacgtctc tttttggaaa agatttttta ttcaaaatga      1560
     aaatagactg ggaatcgata gctagtcagt gtaatcatat cagtgctagt gccaatagtg      1620
     aattacagac tttgcttcaa gaatacgatg acatttttca atctccaaca tccaccgacc      1680
     ggattaggaa ttttaaggct cagatcatct taaaagacaa tgcaacgccc cgctttctca      1740
     aagctcgccc tgtgccgtat tcacagcgag tgaaagtgga taaggagctg gacgagatgg      1800
     aggccaccgg agtcatcact aaagtagaaa cgagtgactg ggcatctcct cttgtcgtgg      1860
     tccccaaagc tgatggccgc attcgcatca cgggcgattt caaattgacg gtcaatcatc      1920
     agctctgcat aacacagtac cccctggcag tcccggacga cttatttgct accgtatcag      1980
     gcggtcatac cttttcaaag cttgatggta gcaacgccta ccaccaaatc gaaattgatg      2040
     aggcatcaaa gaaattttta gtggtgaaca cccaccgggg tctctatcag tacaatgtac      2100
     tgccccaggg catcgcttca tcccctgcaa tattccaaca atttatggac atgctgctaa      2160
     acgggatacc tcataccgga tctttcattg atgatgcaat cacaaccggt gtaactgacg      2220
     ttgaccacct gagccatctc aaagaaatct ttgctcgagt tcgtaagtac aattacaaac      2280
     tatcaaaaca gaagtgtaaa ttcctacaac agtcgttgga atatttgggc cacataattt      2340
     ccaagaacgg aatctctact tgcaagagta aggtccaaac tattagcaat attcctagac      2400
     caactacacc aaaagaagtc ctctcattca tgggccttgt taatttttat ggtaaattct      2460
     tgaaagactt atcaaccatt tctgagcctc tttacagact tactcgtgat aatgtgaagt      2520
     tcgtgtggtg tgataactgt gaacgtgcct tcaaaagcat caaacagatt ctcatcacca      2580
     gtcccacctt ggctcactac gacccatcaa agcgtctggg aatagcagct gacgctgcac      2640
     caaatggaat tggctgtatt ttgttccagg tggaacaaga tggaacggag cgccccattg      2700
     cctatgcatc acgcctcctt tccgacactg aacgcagata cagccaagtg gaaaaagaag      2760
     gcttaagttt gattttttct gttaaaaaat tctataaatt tgtctgtggt cgaccttttc      2820
     ttttagtcac tgaccaccga ccactactca gcatttttgg tccgaaaacg cagctcccat      2880
     cttttgtggc tacacgactc catcactggg ctctatatct cagtcaattc cagtatgaag      2940
     tcgtctaccg gaagtctgcc gaccatggaa atgctgatgc tctctcccgc ctcattccac      3000
     taccccaacg accatccatt gctgtcaccg atgaagaagc tacagtgaac ttcctagcaa      3060
     ctcaacaact ggaaactctc cccatcacag ctgcgcgaat tcgccaagct accgctcgag      3120
     atccggtttt agctaaagtt cagcaactca tcctatatgg ctggccaccc aaactgcgag      3180
     atgaagacaa gccgctgcaa tcatttttta ctcgccgaca agaactaacc atagttcagg      3240
     gagttataat gtggggaatc cgtgttgtca tcccctcatc tctccaaaca gcaatcttgc      3300
     agcagcttca cgaatgtcat tttggcattg tgaaaatgaa atcccttgct cgtgaacata      3360
     tttattggcc aggtatagat catgacattg aaaatattgc caaatcgtgt gtttcgtgcc      3420
     aacagaatgc cccaaatcct ccgagtgctc cactccaccc atggcaattt ccagataagc      3480
     cttggcagag acttcatgtg gatttggctg gcccttttct caacaacatg tggctgattg      3540
     ttgtggacgc ccactccaaa tggcccgaag ttttcaacat gcggcagaac accacctcct      3600
     ctgcagtgaa gcagaaactt ttggaatgtt tcgctcgttt tggcctacca gaacaagtgg      3660
     tgactgacaa tggccgtcag ttcacctcca gtgagtttac atctttttgt aagaataatt      3720
     caattcgaaa tgtgttttct tctgcctacc accccagatc caatggcgag gccgagcgtt      3780
     ttgtgcgcac ctttaaagaa ggaatgcgta ctaccgacat ccccgtcgac ctccgtcttc      3840
     agcggtttct attcagctat agaaccacca cacattgcac tactggttac agtcctgctg      3900
     cggtcctgct caacaaaaga ccacggactt tgcttgactt gttgaaacca gacatctcca      3960
     ccgctgcacg atccagtcag ctcaatcagg aaatcggcta caacaagaac gtgcgtcaac      4020
     gcgagttcca gcctcaggac gtcgtttggg tacaaaccaa cctaaagggg gaagaaaaat      4080
     ggaccatggg caaaatcaag tccaaaactg gacctgtatc atacattgtg gaagtagcgg      4140
     atagggacat gaaacgtcat gtcgaccaaa tcagagctgc tatctcatcg atgcccacca      4200
     cctcttcctc gtcatcaagc cacgctcctg ccgacgtccc acctcagatg actacagcca      4260
     tcgacccaga gtcctcttct tgaacctcaa ggacaactca attaacagat ttattttagc      4320
     ttttctcaac tgtatgttcg tccggttagg aaggaggaaa                            4360
//
ID   Gypsy-1_SiCu-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-298
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5079-5079 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 298 BP; 80 A; 72 C; 38 G; 108 T; 0 other;
     tgtaatgtat ttgaataatt ggttaaattc ctaatatgcc taatatgatt tgtcatgaag        60
     aaccatgtct ccatctccct gtagtcaatc gtctgcactt ttcattaagc taatcagata       120
     gctctcctgt cctgttatct ccttacctta tcctgagaac ttctctccta gttcctcaga       180
     cttgatccta ctcttgactt gataacttct attaaagact gtacataatc caggcaaaga       240
     atctacgtgt tcttggtcac actcatttat gcaccaagca tactcttcat attctaca         298
//
ID   Gypsy-1_SiOr-I repbase;    DNA;    INV; 5506 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SiOr-LTR; Gypsy-1_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5506
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 338-338 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           782..1264
FT                 /product="Gypsy-1_SiOr-I_1p"
FT                 /translation="MRYGQAHLEHVYHSQLKNRIQKSNESLQEFEADVARL
FT                 VRLAYPATPENVMERLAVQAFSDGLRDNETRQALLLAHPTHLVDALARALE
FT                 FEAAKQSSRSLGRVRAIDECSDESVEGIVRKVMDQYMGKKGPIRCWNCGQV
FT                 GHVRSRCKEKNEEPASSRSENY"
FT   CDS           1222..5505
FT                 /product="Gypsy-1_SiOr-I_2p"
FT                 /translation="GEERRTGFVEVGKLLRVEMKGHTSTCTQHAPTKTAQV
FT                 ASLQHKFNSIFVDGFVDGEFRTMLLDTGATKTIIRPDILKTSKKVKTTQWR
FT                 LRTATGSSALIHGEVDLNFVIGSTCFNHRVLVADIEDELILGMDIMTTRGF
FT                 ELNLKQGILKINEEEVVLHRKCEETLRVVVAEDVSIPERCEIFLDGCLEGK
FT                 MNNGSIILLEPRNHDSEIGRGIAVGKALLRAKKTVPVRVMNTNYYSVSLKK
FT                 GTLLGYCCSVSSVVRSVEASKVSTSKIPDKMVKELVNVKGLSPENRRKLRN
FT                 LIIKYQDVFDKGEAGQRGRTNLVQHKIDTGDARPIKQNPRRLPLAKREEAD
FT                 KILREMKEEGVIEPSNSPWTSPVVLVKKKDGTTRFCVDYRQLNNVTKKDSY
FT                 PLPRIDDTLDTLAGSTIFSTLDLKSGYWQVDMAPKDREKTAFSVGSGLWQF
FT                 TVMPFGLCNAPATFERLMESVLKGLSWTTCLVYLDDIIVVGKSFDDHLKNL
FT                 EEVFKRLGSSGLKLSPKKCHLCQEKVHYLGHVVSSQGVAVDPQKTKTVEEW
FT                 PIPKDKHELRSFLGLCTYYRRYVQGFATIAKPLTRLTEGERRFSWDSDSDE
FT                 AFRKLKKALTSAPILSYPLGNGNFILDTDASNVALGAVLSQIQDGQEKVIG
FT                 YFSKTLSKPERNYCVTRRELLAVVKAVEHFYKYLYGRKFLLRTDHAALKWL
FT                 LQFKNPEGQVARWIERLQEFDFDTEHRAGAIHRNADALSRRPCAKDCKHCS
FT                 RAEEKEVKLLRTTVVNDSWQPEDLANDQTSDPELGLVINWKNTGQRPTWEE
FT                 VCRYSPNVKSYWAQWNSLVIDNGLLRRVIERPEGQEERRQIVIPKKRVPEV
FT                 LEEVHNGTSGGHLGVTKTLGKLRERFYWVNCKEDVRAWCKKCDICAAINGP
FT                 QKRGKAPMRQYNVGSPFERIAIDVAGPFPETNDGNKYIVVVMDYFSKWVEA
FT                 YALPNQEASTIADALVKEWICRFGVPMELHSDQGRNFESNLFQGVCEVLNI
FT                 RKTRTTALHPQSDGMVERMNRTINRYLAKVVSDHQRDWDKFLHLFLLAYRS
FT                 SVQESTGQTPASIVMGREVRLPCDLKFGCRPGEEVAGEDYVHTLRQRMDDI
FT                 HQRVRLNIQSASDRMKEHYDIQAEHGGYQPGKLVWLYNPQRRRGLSPKLQS
FT                 SWEGPYEVMDRINDVVYRIRKLPKGKPRVVHFNRLSPYQGEIEDRAGTVRT
FT                 CSFDPPDSEMSFDDFMARYNSSEKARYGVTKEDQRDLFSVPPDYSLAHCVA
FT                 RDLRMSRGIAATFNEKFGRVGELRRQDPEVGSVLRLTDNAHGQARHIFYLV
FT                 TKEWSPSKPTYLNLWKTLIELREALLNNNIARLAIPKLACGLDGLSWRTIR
FT                 NMIEVLFRFTGIEILVCCYNPKLRSGEKTVDCYFYQTSQCTRGQLCKYLHS
FT                 PYTSRDEHVPKKGA"
XX
SQ   Sequence 5506 BP; 1706 A; 1146 C; 1389 G; 1265 T; 0 other;
     attggtgtca agtgtggcgt gtgtgataga ctagaaaaat aaaaagactg acaatggctc        60
     cgaagaaatt gttgaaagac ttgaaagtgt ccgaattaaa atgcatactg gaagagaggg       120
     aatgcgagac agatggaaag aaaagcattt tgcaagccag actgagagac gttttgattg       180
     aggaaggtga ggatcctgac acattttgct ttgagttgga aggtgacctt gactcgtcct       240
     tacaaaaatt agaagacaat ttgaataata aaatacagtg ataaaattat agaaaattcc       300
     caggatttaa ttaatacttt agaagataag atcgcagaaa attctaaaga catacaggcc       360
     agctttaata ataaaatact taatttagaa gaaaagataa cagaaatcta tagagaattc       420
     tacggaacta caagacaaaa taacacagat tgaggacgat gtaaatagaa aaatcgaaat       480
     tttaaaacaa gaaatagcaa aggccaattc accaaaatgt caagaaacat cggaggcacc       540
     gaaactagtc gaaaataagt atatctcaaa gtcagttatt aagcctccac agtttgacgg       600
     aaaaaccgct tgggccaatt atttttgcca gtttgaggcc gctgcgagag cgaacggatg       660
     gacaatcgct gaaaaggcta ccgctttgac tgtcgcactg cgaggagatg cgactgatat       720
     cctgcagaca ctgtcaccat cggaacaggg agattatcag caattggtac gacatttaga       780
     aatgaggtac ggccaagctc atttggaaca tgtctatcat tcccagctaa aaaatcgcat       840
     tcaaaagtca aatgagtctc tgcaggagtt tgaagccgac gtagcccgcc tcgttcgcct       900
     tgcgtaccct gctacgcccg agaatgttat ggagcggttg gcagtacagg cattctccga       960
     cggcttacgt gacaacgaga caagacaagc acttctccta gcccacccaa cgcacttggt      1020
     ggatgcttta gcacgtgccc tagaatttga ggccgcgaaa caaagttctc ggtctttagg      1080
     aagagtacgg gccatcgacg aatgttccga cgaatccgtg gaagggattg ttcggaaagt      1140
     aatggaccag tacatgggca agaagggacc gattcgttgc tggaactgcg gacaggtagg      1200
     acacgtgcga agccgttgta aggagaagaa cgaagaaccg gcttcgtcga ggtcggaaaa      1260
     ctactaaggg tcgaaatgaa ggggcacacg tcgacctgta cccaacatgc cccaacgaaa      1320
     actgctcaag tcgcctcgct acaacacaaa ttcaacagca tttttgtgga tggttttgtt      1380
     gatggagagt tccggaccat gctgttggat acaggtgcga cgaaaactat catcagaccg      1440
     gacattctta aaacatcgaa gaaggttaaa acaacacaat ggcgactacg tacagctaca      1500
     ggaagctccg ctctcatcca tggagaggta gatcttaatt ttgttatcgg aagcacctgt      1560
     tttaatcatc gagtgttagt agcagacatc gaagatgaac ttattctcgg aatggacatc      1620
     atgaccacta gaggttttga gctaaacctc aaacaaggaa ttttgaaaat aaatgaagaa      1680
     gaagtggttc tgcatcgaaa atgtgaggag acgcttcgcg tggtggtagc agaagatgtt      1740
     tcgatccctg agcgctgtga gatatttttg gatggttgcc tagaaggtaa aatgaataat      1800
     gggagtatta ttctgttgga gccaaggaac catgacagcg aaataggacg agggatcgct      1860
     gttggaaaag ccctgctacg agcgaagaaa actgtaccgg tgagagtaat gaacacgaat      1920
     tattattctg tatccttgaa gaagggaacc ctcttagggt actgttgttc ggtctcctca      1980
     gtcgttcgaa gcgtggaagc ctccaaagtt tcgacttcaa aaattccgga caaaatggtg      2040
     aaggagttag taaacgttaa aggattatct cccgaaaata gaagaaaatt gagaaacctg      2100
     ataatcaagt atcaagatgt gtttgataaa ggagaagcag gacagagagg tcgtaccaat      2160
     ttagtacaac acaaaattga taccggagat gcacgaccaa tcaaacaaaa tccgagaaga      2220
     cttccgctcg ccaaacgtga agaagctgat aaaatccttc gagaaatgaa agaagagggt      2280
     gtcatcgaac catctaacag cccgtggaca tcgccggtag tactagtaaa gaagaaagac      2340
     ggtaccacca ggttctgtgt tgattatcgg cagctcaata atgttaccaa gaaggatagt      2400
     tatcccctgc cgaggataga cgatactcta gacacgctgg cggggtcaac gatattctct      2460
     acgttagatc tgaagagtgg atattggcaa gtcgacatgg cgccgaaaga cagagagaag      2520
     acagcgttct cggtgggctc cggactgtgg caatttaccg tcatgccttt tggattgtgc      2580
     aacgcgccag ctacctttga gagactaatg gagtctgtgt taaagggact atcctggact      2640
     acctgtttag tgtacctgga tgacatcata gtggttggga aatcctttga cgatcatctg      2700
     aagaatttgg aagaagtttt caagcgacta gggagctctg gtttgaaact tagccccaag      2760
     aaatgtcatc tgtgtcaaga aaaggtacac tacttgggcc atgtagtctc ctcccaagga      2820
     gttgcggtag atccacagaa gaccaagaca gtggaagagt ggccgatacc taaagataaa      2880
     catgaactac gaagcttttt gggactatgc acatactatc gccgctatgt acagggtttc      2940
     gccaccatcg caaaaccatt gaccagactt accgaaggcg agaggcgttt ctcttgggac      3000
     tcagattctg acgaggcatt ccgaaaattg aagaaggccc tgactagtgc gcccatactt      3060
     agctaccctc ttggcaacgg aaactttata ttggataccg acgctagcaa tgttgcgtta      3120
     ggcgctgttc tgtctcagat ccaggatggt caagaaaaag tcattggtta ttttagtaag      3180
     accttgtcaa aaccggaaag gaactactgt gtaaccagac gagaattact agcagtagtt      3240
     aaagcagtgg aacacttcta caagtatctc tatggaagaa agttcttgtt aagaacagac      3300
     catgctgctt tgaaatggct gttgcagttt aagaatcctg aagggcaggt agctagatgg      3360
     attgaacgat tacaagaatt tgacttcgac acagaacatc gagctggggc aatccatcga      3420
     aatgccgacg cactttccag aagaccttgc gctaaggact gtaagcattg ttcccgagca      3480
     gaagagaaag aagtgaaact cctaagaaca actgtggtta atgatagttg gcaacccgaa      3540
     gatcttgcaa atgaccaaac cagtgaccca gaattaggtt tagtaattaa ctggaaaaac      3600
     acaggccaaa gaccaacgtg ggaagaagtt tgcagatatt cgccgaacgt aaagtcgtac      3660
     tgggcccagt ggaattcctt ggtaatagat aacggactac ttcgccgtgt gatcgagaga      3720
     ccggagggac aagaagagag aaggcagatc gtcattccaa agaagagggt cccagaagtc      3780
     ttggaggaag ttcacaatgg aaccagcggt ggacatcttg gtgttaccaa gacacttggc      3840
     aagctgcgtg aacggttcta ctgggtgaac tgcaaagaag atgtgagggc ctggtgtaag      3900
     aaatgtgaca tttgcgcagc cattaatggg ccacaaaagc gtggtaaagc ccctatgcgc      3960
     cagtacaatg ttggtagtcc cttcgaacga atagcgatcg acgtggctgg tcctttcccg      4020
     gagacgaacg atggcaacaa atacattgtg gtagtaatgg attacttcag caaatgggtc      4080
     gaggcctacg cgttgccaaa tcaagaagcg tccacgattg ctgatgccct tgttaaagaa      4140
     tggatctgca ggtttggtgt tcccatggag cttcattcag atcagggaag aaactttgag      4200
     tccaatctgt tccaaggcgt ctgtgaagtc ctgaacatcc gcaagaccag gacgactgct      4260
     ctacatccac aatccgatgg gatggttgaa cgcatgaaca gaactatcaa ccgttatctg      4320
     gccaaagtag tctctgacca ccaaagagac tgggacaaat ttcttcacct gttcctgttg      4380
     gcctaccgtt catccgtcca agaatctaca gggcaaactc cagccagcat cgttatggga      4440
     cgggaagtgc gcctaccctg tgatctgaaa tttggttgcc gaccgggaga agaagtcgcc      4500
     ggagaagatt atgtccacac actacgtcaa aggatggacg acattcatca gagagtccgc      4560
     ctaaatattc aaagtgctag tgaccgaatg aaggaacact acgacattca agctgagcat      4620
     ggaggatacc aaccagggaa gttggtgtgg ctatataacc cgcagagacg tcgtgggtta      4680
     tctccgaagc tacaatcctc gtgggaaggg ccatacgaag tcatggatag aattaatgac      4740
     gtcgtatacc gtatcagaaa attgccaaaa ggaaaaccga gggtagtcca tttcaaccgt      4800
     ttgagcccct accaaggcga aatagaagat cgtgctggga ccgtgagaac ctgcagcttt      4860
     gatccccctg attcggagat gtcctttgac gatttcatgg cccgatacaa cagcagtgag      4920
     aaggctcgct atggtgtaac caaagaagat caacgagacc tcttttccgt gcctcctgat      4980
     tattcgctcg ctcattgtgt ggctcgagat ttgcggatgt ccagaggaat cgctgcgacg      5040
     ttcaatgaga agtttgggcg tgtcggagaa ctacgccgac aggatccaga ggttggaagc      5100
     gtcttgaggc taaccgacaa tgcacatggt caagcaaggc acatcttcta cctggtcacc      5160
     aaggaatggt ccccgagtaa gccgacttat ctcaatctat ggaagaccct gattgaactg      5220
     agagaagccc tgctaaacaa caacattgca cgattagcca ttccgaagct ggcgtgtgga      5280
     ctcgatggtt tgagttggcg tacaatccgg aacatgattg aagtcttgtt cagatttacg      5340
     ggaatcgaga tcctcgtttg ctgctacaac ccaaagctga gatcgggaga gaaaactgta      5400
     gactgctatt tctaccagac ttcgcaatgt accaggggcc agctttgcaa ataccttcat      5460
     tcaccgtata catctcggga cgagcatgta cctaagaagg gggcag                     5506
//
ID   Gypsy-1_SiOr-LTR repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-422
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 326-326 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~% identical to consensus. -bp TSDs.
XX
SQ   Sequence 422 BP; 131 A; 84 C; 82 G; 124 T; 1 other;
     tgttgcgggc cggtgtggac tcgacctaac ctcacaatat ggcccgccct cggatgacct        60
     taacatcgca ttaaagaata gacaccgcaa tgattcattc gttcgagaag aatcgagtcc       120
     cactggaatg gactagtaca tacgagaaca ttcgaaaacc ttctctacgc acctaacgat       180
     ctatggacta ttctagagtt ctttacctgt cggtataaaa gccggcggct gtggcctasa       240
     gggggcagtt ataaatatac agttgacgcg ctaaaattca aaataaattc ttagttataa       300
     atcgtttgta aatagttcta taagtctttt atcgttattg tttttgttaa ttagtgttaa       360
     ataaatagtg tttaaataaa ttgtgacttt ctatccacac ggaaccgacg aaaaacgtaa       420
     ca                                                                      422
//
ID   Gypsy-1_SpEx-I repbase;    DNA;    INV; 4920 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SpEx-LTR; Gypsy-1_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4920
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4062-4062 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..1331
FT                 /product="Gypsy-1_SpEx-I_1p"
FT                 /translation="MPLVPQDVRGVSTRAMSEAQRVREEGAAAQTSDAEAK
FT                 PVQMDLLLQLRQMMAEQLRELKEDQARRQEEQARCQAEQLRELKEDQARRQ
FT                 EEQARRQEEQARRQEEQARRQEEQARCQSEQLRELKEDQARRQEEQARRLE
FT                 DMHKDFTKGLQKAVERVQEVEEGLGKLEHRVMAIEERVEEEISKIKQEVTS
FT                 PSPLKSRSRLAAVFDAPNAASSATKGLKIPHYDGTTSWTAFKLQFETLMEA
FT                 YGWTQKEAQSALTLALRDQALSVLEAIGASGDLSFSTLLDALEARFGDSHL
FT                 EHVYRAQLKERTQRANESLQQWSVEIEKLVRRAFRSTPSMIEGTLLQAFID
FT                 GVRDPEVRAAVHLGHHKNMKEALAHALEVEAVRGNSRTLRLREMTTTEQVP
FT                 PRRRNFMCYGCGERGHMRSDCPKKVNRQDAAVSTSDQQGN"
FT   CDS           1319..4906
FT                 /product="Gypsy-1_SpEx-I_2p"
FT                 /translation="PAGKLNPARAAGWALAGSGITPTIYIKQTNDGNTLVI
FT                 DGQVNGKNSQLTLDTGASRTVINVRLLGQNIRKHVKPIVGLRMKSATGQCI
FT                 PISGKLHVTIKIGERVYRHEVIVAKILDDCILGLDFLQGHQCNIDLKSGVL
FT                 LCGTEEIPMKGGTLGKVCCLRRTVLEPKSQTLVPIALPRRREGSLPLRCAV
FT                 IDKSEHVNSWLPARTVVGSSDVNRIPVFNFSDSKITIEEGEPVGVLEEVAW
FT                 IRKCSENLVKKDSTGIDFVTKILDENKSLTKVETMKARNLLLRFSDVFSRS
FT                 DGDIGRTGLVKHKINTGDTMPIRQRPRRIPFAREKEVEEMIDDMRKNDVIE
FT                 PSSSPWCSPVVLVKKKDGSTRFCVDYRRLNDVTKKDSYPLPRIDDTLDTLS
FT                 GMKWFSTLDLKSGYWQVDLDPKDKEKTAFSTGKGLWQFKVMPFGLCNAPAT
FT                 FERLMEQVLAGLLGETCLVYLDDIIIVGRDFDDHLRKLEKVLDKLRGANLK
FT                 LSPKKCSFFKREVNYLGHVISERGIETDPAKTAAVKEWPTPKDKTQVRAFL
FT                 GLCSYYRRFVKGFSDIAKPLHRLTEEKRAFIWDEDCEQAFRELKERLCNTP
FT                 ILGYPSAKGIFVVDTDASNIGIGGVLSQRDGEQEKVIAYFSKSLSKPEKNY
FT                 CVTRRELLAVVKTLHHFKKYLLGRKFLIRTDHAALKWLLQFKDPEGQVARW
FT                 LEQLQEFDFEIEHRGGRIHGNADALSRRPCVEDCKHCAKKETAFLKVIRTD
FT                 TVDEAWGDDAMKLEQERDADIKPILEWLRSGNKPSWSDVAQYSAVTKGLWA
FT                 QWKSLTLHNGLLCRKWESTNGKDEHLQLVVPRSKIRDVLKAFHDGSSGGHL
FT                 GIRRTLVKIKERFYWLHCKYDVEDWCRKCTSCAAVKGPQTRSRGAMKIYNV
FT                 GMPWERIALDIAGPFPITDSGNRYVLVVMDYFTKWPEVFAIPNQEAVTVAT
FT                 KLVNEVFTRFGVPLEMHSDQGRNFESQVFQETCKLLGIHKTRTTPYHPQSD
FT                 GMVERFNQTLERHLAKVVDSHQRDWDTYIPLFLLAYRTAVHESTAKTPAFA
FT                 NFGRELRLPADLVSGCPPGDSRTEFSDYISELRAKMLDIYEQIREAGLQAS
FT                 DRAKTRYDRRANSVGFEEGSLVWLHNPVRRKGKSPKLQPSWEGPYEIVTKI
FT                 NDITYRIRKSSRSPLKVVHIDRLARYYGSNDARDERI"
XX
SQ   Sequence 4920 BP; 1454 A; 1014 C; 1364 G; 1088 T; 0 other;
     tttggtgtca gaagtgggat tggagaaaaa tgccgctagt gccgcaggac gtaagaggag        60
     tgagtacccg tgctatgtca gaagcgcagc gtgtgaggga agagggtgct gcagctcaga       120
     ccagcgatgc agaagccaag cctgtgcaga tggatcttct gctacagctg cggcaaatga       180
     tggcagaaca gctgcgtgag ctgaaagaag atcaagcgcg ccgccaagaa gagcaagcac       240
     gctgtcaggc agaacagctg cgggagctga aagaagatca agcgcgccgc caagaagagc       300
     aagcgcgccg ccaagaagag caagcgcgcc gccaagaaga gcaagcgcgc cgccaagaag       360
     agcaagcacg ctgtcagtca gaacagctgc gggagctgaa agaagatcaa gctcgtcgcc       420
     aagaggagca agcgcgtcgc ttggaggaca tgcataaaga tttcacgaag ggactgcaaa       480
     aggctgtcga acgggtacaa gaagtggagg aaggtttagg caagttggaa catcgcgtca       540
     tggcgataga ggagagagtg gaagaagaga tctccaaaat caagcaggaa gtgacaagcc       600
     caagcccttt gaagagccga agccgtcttg cagccgtttt tgacgcccca aatgcggcct       660
     caagcgcaac gaaagggctg aagattcccc attacgacgg aacaacatcc tggaccgcgt       720
     tcaagctaca gtttgagaca cttatggagg cttatggttg gactcagaag gaagcacagt       780
     cagccctcac cctggccctc cgtgatcaag cgctctcagt gctggaagct atcggcgcaa       840
     gtggggatct cagctttagt accctcctcg acgcacttga ggcacgtttt ggagacagcc       900
     acctcgagca cgtgtacaga gcgcaattaa aagagcgtac tcagcgtgct aatgagagtc       960
     tacagcaatg gtccgtggaa atcgagaaac ttgtgcgtcg agcttttcgg tcgactccat      1020
     caatgattga aggcacgctt ctccaagcat tcattgacgg tgttcgggac cccgaagtac      1080
     gagctgctgt tcatctgggc catcacaaga acatgaaaga agctctggcc catgcattgg      1140
     aagtggaagc cgtgcgtggt aactcccgta ccttacgtct gcgggaaatg acgacaacgg      1200
     agcaggtacc tccacgccgt cggaacttca tgtgctatgg atgcggagag cgtgggcaca      1260
     tgcggagcga ctgcccgaag aaggtgaacc gccaggacgc ggcggtctca acttctgacc      1320
     agcagggaaa ctaaatccag ccagggctgc ggggtgggcg ctggccggta gtggaataac      1380
     cccaacaatc tacatcaagc aaactaacga tggaaatact ctggtgatag acggtcaagt      1440
     aaatgggaaa aacagtcagc taacattaga tactggagct tcaaggacgg tgataaatgt      1500
     tcggctgctc gggcaaaaca tcaggaaaca cgttaaacca attgttggcc tacgaatgaa      1560
     atcagctacc ggccagtgca taccgataag tggaaaactg catgtaacaa tcaaaattgg      1620
     ggaacgtgtt tatcgacatg aggttattgt ggccaaaatt ctggatgact gcatcctggg      1680
     acttgacttc ctgcaagggc accagtgtaa catcgactta aaatctggag tattactatg      1740
     tggaactgag gaaattccga tgaagggtgg aaccctggga aaagtttgct gtttaagaag      1800
     aactgttctt gaaccaaaat cacagactct cgtaccaatc gcattaccta ggaggaggga      1860
     aggaagttta cctctaaggt gcgctgtgat tgataaatcg gaacacgtaa actcatggct      1920
     accggcgaga actgtcgtgg ggtcatctga tgtcaaccgc attccggtat tcaacttcag      1980
     tgattcaaaa attacgattg aagaaggaga gcctgtgggc gtattggaag aagtggcctg      2040
     gataagaaaa tgctcggaga atcttgtgaa gaaggacagt acgggaatag actttgtaac      2100
     gaaaatctta gacgaaaaca aaagtctgac aaaagtggag actatgaaag ctagaaattt      2160
     acttcttcga ttctctgatg tgttttcaag aagcgatggt gatattggcc gaactggttt      2220
     ggtgaagcat aaaataaaca caggtgatac aatgccaatt cgtcaaaggc ccagacgcat      2280
     accattcgct cgtgagaaag aggttgaaga aatgattgac gatatgagga aaaatgacgt      2340
     gatagagccc tcttctagcc cttggtgttc acctgtcgtg cttgtcaaga agaaagatgg      2400
     ttcaacgagg ttttgcgtag actatcgacg attgaatgat gtaaccaaga aggatagcta      2460
     cccgttacca agaatcgatg acacacttga cacactgagt ggcatgaaat ggttttcaac      2520
     gctcgatctg aaaagcggct attggcaggt ggatttggat cccaaggaca aggaaaagac      2580
     cgcattctca actgggaagg gactctggca atttaaggtg atgccatttg gattatgcaa      2640
     tgcaccggca acctttgagc gtttgatgga acaggtgctg gcgggactgc tgggcgaaac      2700
     ctgcctagtt tacctcgatg acatcatcat tgttggacgg gattttgacg atcatctaag      2760
     gaaattggaa aaggtactcg ataagctgcg tggagcaaat ttaaagttga gtccaaagaa      2820
     atgctctttc ttcaagcgcg aagtgaatta tctaggacat gttatttctg agagaggaat      2880
     tgagactgat ccagccaaga ctgccgctgt taaggaatgg ccaacaccta aagacaaaac      2940
     gcaagttcgg gcatttcttg gattgtgctc gtattatcgg cggtttgtga aaggattctc      3000
     ggacattgcc aagcctttgc atcgattgac agaggagaaa cgtgccttta tctgggacga      3060
     ggattgtgag caagcctttc gagaactaaa agaacggctt tgtaacacac caattctcgg      3120
     ataccccagc gcgaaaggaa tattcgtagt tgatacggat gccagcaata ttggaatagg      3180
     aggtgtcctt tcacaacgcg atggtgagca ggagaaggtt attgcttact tcagcaagtc      3240
     actatccaag ccggagaaga attattgcgt gaccaggagg gaattgctgg ccgtagtcaa      3300
     aactctgcac catttcaaga agtatttact gggacggaaa tttttgatca gaactgatca      3360
     cgctgctttg aaatggctgc ttcagtttaa ggatcccgaa ggccaagtag ccagatggtt      3420
     ggaacaactt caggaatttg actttgaaat cgaacatcgc ggcggaagaa ttcatggcaa      3480
     cgcagatgca ttatcgagac gcccatgcgt ggaagattgc aagcattgtg ccaagaagga      3540
     aactgctttt cttaaggtga taaggactga tactgttgac gaggcatggg gagatgatgc      3600
     gatgaaatta gaacaggaaa gagatgcaga tatcaaacca atactggagt ggctacgaag      3660
     tggtaacaag ccaagttgga gtgacgtcgc ccaatatagc gcggtaacga aaggtttatg      3720
     ggcacagtgg aaaagcctta cgctgcataa cggacttctg tgcaggaaat gggaatcaac      3780
     aaacggcaag gacgagcatt tgcaattggt ggtgcctcgt tcaaaaataa gggatgtatt      3840
     aaaagcgttc catgatggat cttctggagg acatttggga attaggagga ctttggtgaa      3900
     gatcaaggag aggttttatt ggttgcattg caaatatgac gtcgaagatt ggtgccggaa      3960
     atgcactagt tgtgcagctg tcaagggtcc acaaacaaga agcagagggg cgatgaaaat      4020
     ctacaatgtt ggtatgcctt gggagagaat agccttagac atcgctggac catttccaat      4080
     cactgattcg ggcaatcgct acgttttagt ggttatggat tattttacaa aatggccgga      4140
     ggtctttgcc ataccgaatc aagaggcagt aactgtagcc acgaagttgg taaacgaggt      4200
     attcacccga ttcggagtgc ccttggagat gcacagtgat caaggacgga actttgaatc      4260
     ccaagttttc caggaaactt gtaaactttt gggaatccat aagactcgaa cgacccctta      4320
     tcatccacag tcagatggaa tggtcgaacg cttcaaccaa acattggagc gacacttagc      4380
     aaaggtggtt gacagccatc agagagattg ggacacttac atacctctct tcttgcttgc      4440
     ctatcggact gctgtacatg aaagtaccgc aaagacgcct gcatttgcaa attttggaag      4500
     ggaattgaga ttaccggcag atcttgtatc gggctgtcca cctggtgact ctcgcaccga      4560
     gtttagcgat tacataagcg agttaagggc aaaaatgttg gacatttatg agcagatcag      4620
     ggaggccggt cttcaagcta gtgatcgcgc aaagacgcgc tatgatcgac gagccaattc      4680
     tgttgggttt gaagaggggt cattggtctg gcttcataat ccagtcagaa ggaagggaaa      4740
     atctccaaag ctgcaaccga gttgggaagg tccttacgag atagtcacga agatcaatga      4800
     cattacttac agaattcgga agtcttcaag gagccctttg aaagttgtcc atatagacag      4860
     gttggcgagg tattacggca gcaacgatgc tcgggacgag cgaatctaag aggggggcag      4920
//
ID   Gypsy-1_SpEx-LTR repbase;    DNA;    INV; 680 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-680
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4072-4072 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 680 BP; 227 A; 110 C; 180 G; 163 T; 0 other;
     tgtgacagaa aactctttga catcatgacg tcaatggatg gttgtcaaac gttgcctaga        60
     gattgtaaat ttcgtcgtga attgtcaaca cgagttggtg taatcggtaa ggcgtgtgga       120
     ttacaccaca gagaccccga gttcgagtcc cgccgtaaac atgaagtttt ttagttgatg       180
     gaagttttgt cgaactttct ggaatatttg agtgaaagta atgaaaaatt aaggagcgag       240
     aaggagaata aataaaaatg aataacgaaa ttattggaag gttctggagg catgacgatc       300
     aaaaaagaat aacgaaattg aatgttctag aacctgaccg ggggtatata agcggaactg       360
     cggctcaccg ctggcagttg agttctaagt ctaaagcgat tcggaagaaa aggaagaagt       420
     gaaaaagaag aaaagtgagt gaaatagtga agtgcagtga aatagtgaag tgcagtcagt       480
     taagtgagtt aagttagcgt gaacggcaaa gttgtgtcag tcggccggac tctgctggag       540
     aggaacgccg ataacttaac tccgtggacg ctgtaactta agcgcaatag aaagtctgaa       600
     aaccggtatt agtgtttcat ttcatccaat cccgtaaccc aagcccgcat agtcaggaac       660
     gtgacgtcag gcacgtaaca                                                   680
//
ID   Gypsy-1_SpFr-I repbase;    DNA;    INV; 4608 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SpFr-LTR; Gypsy-1_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4608
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1845-1845 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..4595
FT                 /product="Gypsy-1_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKTRGQTAIENRSSDSDEEFTDTRVAGTAADDNMAA
FT                 ASPTTTDRRDTNMITMTEDQLSRILASVMRGSTQPPAAGVHAVHTAQSNFT
FT                 RCTARFDGAACNADVVEAFIESVLVYKECAGVSDDHALRGLPMLLTGDAAV
FT                 WWRGVRPTVESWDDALRRLRFMYGAARPAHRVLRDIFATEQQSESADVYIS
FT                 RVRANISRLPYPLPEQMQLDIVYGLLHRRIRKRVPRDSVSSVDCLLERARY
FT                 VEEMLGEANQSSTSSHNNNTANTNLRDKDNPSTSTGKNINPQTAAVKNVNP
FT                 QTTTSDSSSNIDSSSATSKRVRPRCARCKRFGHTMDECKSKGNELACYGCG
FT                 REGVIRSKCPTCKGKCKEDAPAAAADGKVSFQSAYTHDSSTSQPTINIEVA
FT                 SLLGVAVLDTGATESLASPGLYAILLKNGTSFTSARRTIGLADGTQHTRDV
FT                 LLCDTNVVVRGRIVPTTFIVIPGAENRTLLGQDFITKSGILLDLQRGCWYF
FT                 SDSTKVKVPFVRSYSLMSTSDAELMQVNTTGLALRENEGSKLSPAQRTQLN
FT                 QLIISKAARFATEGPATSYATHHIRVGERQEPTASPPYRMSAGKKQLLDGE
FT                 LEKLLRADVIEECESPWAANVVLVKKKDGGVRLCVDYRKLNAVTEPDRYPL
FT                 PRIEDVLHAAKTTAYMSTLDLHSGYFQVSVAEEDRDKTAFVTPSGTYRFKR
FT                 MPMGLRNSGATFQRLIDRFRSNLVVPARTLETSDGAVTSSDPRGGGRSVSI
FT                 LGYLDDLIVLSPTFEQHLEDLEAVFDRLDKFNLRVNRKKSCFACDSVRFLG
FT                 HIIVPGGLQVDPEKTSAIADMPAPKNERQLKGFLATSSWFRRFVPNYAAVA
FT                 KPLTDLLKKNSSWRWHEEQQAAFEHIKRLLVTAPILRQADESKPFSLNTDS
FT                 SGYCLGAVLMQGEGPDERPVEYASRLLLPAERNYTTTEREALAVVWAVTKF
FT                 RGYIEGSEVIVKSDHQPLRWLMSLKSPSGRLARWALTLQAYNLQIQYTPGK
FT                 VNVIADALSRPACCEKDPGGCEVCLVTVDIPHRAPADVRDNQLKDPELKTI
FT                 VEDLEDSDPSRGRGWSERGYLMSDGVLYRCAPEADDADSACLVVPSHEREG
FT                 ILADFHDAPTAGHFGVERTLQRIRARYFWVGMRTFVADYVRRCAACQRYKA
FT                 DNKKPAGLLQTPAATRRFEVVSVDLFGPLPKTAKGNRWIFIIEDVSTHWVE
FT                 LFALETATSVECAEILISEVFLRFGVPRRMVSDNGVQFVAEVMQQACHVMG
FT                 IKQSLTPLYHPESNPVERKNRDLKPQLAILVGKDHASWDRHLAAIRFAMNS
FT                 AVTASTGFSPAFLTFGRELRAPSDVVADMKAIVDNDNFVPSITPYLRRLST
FT                 ALLDARDVHEQAQSIRKKYADEGRRTPPDYKVGDLVLLKTQSMNDAGRGQT
FT                 AKFIPRRDGPYRIREVVSPTTYVIEGLTRAEHIGRYHVSHLTPFVGDIVSP
FT                 VREKRKRGRPRKFDASPNARALCPN"
XX
SQ   Sequence 4608 BP; 1098 A; 1159 C; 1326 G; 1025 T; 0 other;
     aaaattgcgc ccaactcgtg gctcgtgctc gaaagtacct acgcgagtgc gaacgtattc        60
     cacgctctgt tgaagtctgt tgtgtaccta ctgtaccgag gctgtaaccg tcgtgtctcg       120
     agaagatgcc gaaaacacgc ggacagacgg ccatcgagaa ccgcagtagt gatagtgacg       180
     aagagttcac ggatacgcga gtggcgggaa ccgccgcgga cgacaacatg gcggcggcgt       240
     cacctaccac aacggaccga cgcgatacga atatgatcac aatgacggaa gaccagctat       300
     ctaggatcct ggccagcgtg atgagggggt cgactcaacc tcctgctgca ggagtgcacg       360
     cggtgcacac tgcgcagagc aattttaccc ggtgcacggc tcggttcgat ggagccgcct       420
     gcaacgccga cgtcgtggaa gcgttcatcg agagcgtgct cgtctacaag gagtgcgcag       480
     gcgtctcaga cgaccacgcg ttacgaggac tgccgatgct gctgaccgga gacgccgccg       540
     tgtggtggcg aggagtgcga cctacggtgg agagctggga cgacgcgtta cgccggctgc       600
     gcttcatgta cggcgcggcg cgcccagccc acagggtctt acgcgacata ttcgcgacag       660
     aacaacaaag tgaaagtgcc gacgtatata tttcgcgtgt gcgtgctaac atttcgcggt       720
     taccatatcc tttaccagaa caaatgcaac tcgatatagt gtatggcctg ttacaccgta       780
     gaatccgcaa acgtgttccg cgtgatagcg taagtagtgt cgactgtcta cttgagagag       840
     ctaggtacgt agaggagatg ctgggcgaag cgaaccaatc tagtacatcg tctcacaaca       900
     ataataccgc gaacacgaat ttacgtgata aagataaccc ttcaacctcg accggtaaaa       960
     atattaaccc gcaaacggct gcggtgaaaa atgttaaccc tcaaacgact acgtccgact      1020
     ctagttcgaa catagatagt agtagcgcga cttctaaacg tgttagacca cgctgtgcac      1080
     gctgcaaacg tttcggacac acgatggacg agtgtaagtc gaaaggtaat gagttagctt      1140
     gttatggttg cggtcgtgaa ggcgttattc ggtcgaaatg tcccacttgt aaaggcaagt      1200
     gcaaggaaga tgcaccagcc gcggccgccg acgggaaggt aagtttccaa agtgcttata      1260
     cacacgattc ctccacgtcg cagccgacga taaatattga agtggcttcg ttattaggtg      1320
     tcgctgtgct tgataccggc gctaccgaaa gcttagctag ccccggtttg tatgctattt      1380
     tgttaaagaa cgggactagt tttacatcgg cccgccgcac gatagggttg gccgacggga      1440
     cccaacatac acgtgacgtg ttgttgtgcg atacgaatgt tgtagtacgg ggacgtattg      1500
     tacctacaac atttattgtt ataccagggg cggagaatag gacgcttctc ggacaagatt      1560
     ttattacgaa atctggtatt ttgcttgacc ttcaacgtgg ttgttggtac ttttcagatt      1620
     ccacaaaggt gaaggtaccc tttgtgcgct cttacagtct tatgtccacc agtgacgcag      1680
     agctgatgca ggttaacacc accggcctgg cactgagaga aaacgaggga tctaagctgt      1740
     cacctgctca gaggacgcag ctcaaccagc ttataatatc taaggctgcg cgcttcgcca      1800
     ccgagggacc agctacatct tacgctactc accacattcg agtaggcgag aggcaggagc      1860
     ctaccgcctc accaccctac cggatgtcgg caggtaagaa gcagctgctg gacggtgagc      1920
     tcgagaagct gctgcgagca gacgttatag aggagtgtga gtcgccgtgg gccgcgaacg      1980
     tagtgttggt gaagaagaaa gacggtggcg tccggttatg tgtggattac cgcaagctca      2040
     atgctgtgac ggagcctgac cggtacccac tgccgcgcat agaagacgtt cttcatgccg      2100
     cgaagaccac cgcctacatg tcaacgctcg accttcattc tggctatttc caggtaagtg      2160
     tcgcggaaga ggaccgtgac aagaccgcgt ttgttacgcc ctctggtacc tacaggttta      2220
     agagaatgcc catgggattg cgcaactccg gtgccacgtt ccagagactg atcgaccggt      2280
     tccggtcgaa cctggttgta ccagcgcgga cactcgagac cagtgacggc gctgtgacgt      2340
     cctcagaccc ccgaggtggt ggtagatcgg taagtatcct aggctaccta gatgacctga      2400
     ttgttctgtc acccaccttc gaacaacacc tcgaggatct ggaggcagtc ttcgataggc      2460
     tggataaatt taatctgcgt gttaaccgca agaaaagttg ttttgcctgt gattcggtgc      2520
     ggttcctggg gcacattatt gtacccggtg gtttgcaggt agacccggag aagacctcag      2580
     ccatagctga catgcctgcc ccgaagaacg agaggcagct taaaggtttc ttagctacgt      2640
     caagctggtt ccggcgattt gtgccgaatt acgccgctgt cgcgaagcct ttaactgacc      2700
     ttctcaagaa gaatagctcg tggaggtggc atgaggagca gcaggctgcg ttcgagcata      2760
     tcaagagact cctggtcacc gcgcccatac tccgtcaagc cgacgaaagt aagcccttct      2820
     cacttaatac cgacagtagt ggttactgtc tcggagcagt tctgatgcag ggggagggcc      2880
     ctgacgagag gcctgtggag tacgccagtc ggttgctgtt accagctgag cgcaactata      2940
     ccaccacgga aagggaggca ctagctgtgg tctgggcggt gactaaattc aggggctaca      3000
     tcgaagggtc agaggtcatc gttaagtccg atcatcaacc cttgcgttgg ttgatgagtt      3060
     tgaagtcccc cagtggccgt ttggcaaggt gggcattgac ccttcaggct tataacttac      3120
     agatccagta cacccccggt aaggtgaacg tgattgcaga cgcgctaagc cgccccgcct      3180
     gctgtgaaaa ggacccaggt ggatgcgagg tatgcttagt aactgtagat ataccgcaca      3240
     gggcacctgc cgacgtgcgt gataaccagc tcaaagaccc cgagctgaag acgatcgtag      3300
     aggatctgga ggactccgat ccgtctaggg ggaggggctg gtcagaacga ggttatctga      3360
     tgtctgatgg agtattgtat cggtgtgcac ccgaggctga cgacgctgac tccgcctgtc      3420
     tcgtggtacc gagtcatgaa agagagggca tccttgctga cttccatgac gctcccaccg      3480
     caggtcattt cggtgttgag agaaccctgc agcgcatcag agctcgctac ttttgggtag      3540
     gtatgagaac cttcgttgct gactatgtta gacgttgtgc tgcttgtcag cgttataaag      3600
     cagacaacaa gaagcctgca ggactactgc agacgcctgc tgcgactcgc cggttcgagg      3660
     tcgtgtcagt ggatttgttt ggccctttgc cgaagacggc taaaggtaac cgttggattt      3720
     ttattataga ggacgtgagt actcactggg ttgagctgtt cgcgttggag accgccacca      3780
     gcgtagagtg cgctgagatt ttaatcagcg aagtcttctt gaggtttgga gtcccgcgta      3840
     ggatggtcag cgacaacgga gttcagttcg tagctgaggt gatgcaacag gcatgtcacg      3900
     tgatgggtat caaacagtct ttgacgccgt tgtaccaccc ggaaagcaac cccgttgaac      3960
     gcaagaaccg ggacctcaaa ccccagttgg caattctggt ggggaaggac cacgcctctt      4020
     gggatcgcca tctcgcagct ataaggtttg cgatgaattc agccgtgaca gcgagtacgg      4080
     ggttttcacc ggcttttctt accttcggaa gggagctgcg cgcaccatct gacgtcgtgg      4140
     ctgatatgaa agccatcgtg gataacgata atttcgtacc gagtattacg ccttaccttc      4200
     gtaggttgtc gacagcgctt ctagatgcca gggatgtcca tgagcaggcc cagtccatca      4260
     ggaagaagta tgctgatgaa ggtagacgta cgcctccgga ttataaggta ggtgaccttg      4320
     tcctcctaaa gacgcagagt atgaacgacg caggccgtgg acaaaccgcg aagttcatcc      4380
     ctaggagaga cggcccgtat cgtattcggg aagtggtaag tcccaccact tatgttatcg      4440
     agggacttac gcgagctgaa cacattggac ggtaccatgt gtcacactta acgccattcg      4500
     tcggcgacat cgtgtctccg gttcgtgaga agcgcaagcg tggtcgaccc cgtaaattcg      4560
     atgctagtcc gaacgcgagg gcgctatgtc cgaactagag ggggagtg                   4608
//
ID   Gypsy-1_SpFr-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1859-1859 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 304 BP; 66 A; 83 C; 68 G; 87 T; 0 other;
     tgtagcgaga atatcatccg tcgcgtcgtt tacgtgctgt gttataacga gaatatcatc        60
     cgacgcgtcg gttacgcgct tcgcgcgcta acgcaagccg cggcgttccc accgctcctc       120
     acgtcgccag tcggccctac acgcccgtag tgaaagcaca tacgcgcgcg actgcgtcgc       180
     gcggcgtcct gccttgtacc tagattattg tttgaactat attactgctg tctgtgtgtt       240
     acctaattgt gattgtcact aactgtgtaa ttataatata ataaactttt gtacatccat       300
     taca                                                                    304
//
ID   Gypsy-1_TCa-I repbase;    DNA;    INV; 5239 BP.
XX
AC   chrUn_220;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_TCa_;
KW   Gypsy-1_TCa-LTR; Gypsy-1_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5239
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_220; Positions     539    5777.
XX
CC   Positions [2749-3216] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..1357
FT                 /product="Gypsy-1_TCa-I_2p"
FT                 /translation="MPENQQLFKFEYLQILPEFTGNQALLSEFIATSEQLI
FT                 NKFYNVQDANDFQNTLLIKSIKNKIKGEAAAHIASYQIKNWNDLKTALLAT
FT                 YADKRDLQTLTIELCNLRQGNLKPLEFFTRIQENLNLQISYISTQVVVTAR
FT                 DALIQNSNHLALRVFLKHLNNPLGDYLSTRQPASLGDALRILTNDFNINDK
FT                 TKFTKPQTNHNRPNPMVYKPLPQPHQNFNRQQNFNQNRNQSNVFKPRQTQL
FT                 DKPVPMSISTRNTVPNKPNYNFRQPQQNWYAEELHNNENEVNDQSEIQECP
FT                 DDNNETNNGASTSFFEPNFEQYSEPFLEEAASDMLNY"
FT   CDS           2011..3597
FT                 /product="Gypsy-1_TCa-I_1p"
FT                 /translation="MATTPDNSEPETDYSDKPIFEYIKKFNQELINKEDDI
FT                 SSTRVEPDKDLDQNIDENDDNITIHTNEENPVCLIPISENPLNFGKNQIQF
FT                 ISVTNNPSDPVVIKLFETSKQRITVQISRNDSKNNILNFIKNYVIPQVSYA
FT                 CHFASDELYEITGNILREHFNESILFKRHLKILEDVESPEEQIAIIQNYHY
FT                 GKSNHRGINETLQKISSRYYWPNMQKAIQNFINKCEICKAVKYDRKPLKLK
FT                 FNLTPTPTKPFEIVHIDVLKYQSHKFLTIIDAFSKYAQVYLLENMQAIEIM
FT                 KKLLIFFSHHSVPSLIVTDNGSEFDNGVITEFFRLHKIDVHFCSPHHPASN
FT                 GLIERFHSTFLEHLNLLNNRPEFSKDPISTKILYATIAYNNSIHSTTKLTP
FT                 FNVLNLNNEQEIGDINLEYVILNNHLQSHKEKLQIIFKEINKRLTENKKKL
FT                 ITKLNENRENIPTKLPDTVFVKSNFRSKVRNRYKKEEILETNRDRKTIKPK
FT                 INKSKTGRKFNKLHMDNVKRPTKQENSIAGTSS"
FT   CDS           3609..4868
FT                 /product="Gypsy-1_TCa-I_3p"
FT                 /translation="MVTVSSDRNITNNPGILPINLGKARLQSSSHHMIHYF
FT                 DISGLLTEYNKLQTYLEIVKNSTANETETQKEIQNYLKIIHYNINLVDEKL
FT                 YPFFQNKRAKRGLVNILGSIIKTITGNMDSEDNERITSVINTIKQNQNNIA
FT                 HQLTNQYSINQEIINKFEKTIKDIEHNERALYSLTSKFQNVTRNQINTLFI
FT                 KDTLNQLSHLFNVILNIAQDIENSLAFCKLQTVHPSIITNEELFKELLKIE
FT                 SIYKNHLPFPVKSENIQNYKRILSTKCVIKEFEIIYFLSFPLYETRELELF
FT                 YLIPLPDQKFQTIIPSAKYVLKGESYLWPLTDICDKIQKEYFCKNELRTYV
FT                 NISCQMEILFKNTFEKCLPIQLNRLQTLEFVPEINQYLGIFPVPVSIKNFL
FT                 LQCFGTTPNPRCLSLRKSTKLPKIRQ"
XX
SQ   Sequence 5239 BP; 2068 A; 1030 C; 688 G; 1453 T; 0 other;
     taattggcgc agtcagtagg ataggcgaaa cgtcttgtgc ccaaaaaagt gaacctccaa        60
     aaatctaagt tgtggacttt caccgaaaaa ttgtgaaccc aacaagtgcg cgaggacttt       120
     cacctagtgg ccgctggacc tggacaactc cacggacttc caatcaaaag acggtgcgtt       180
     tcaacgcttt gacgcctatc gaaaaaacct gaagacaacg ttggcagatg gagtacagtt       240
     ggtgagtcgt agatgtcatt ttgcaacaaa ttcggactcg aaaaattgca tcaatcttat       300
     caaattcggg cgaaaaccga aaaattaatt gtttgaaatt tttgagtatt aagaaaaata       360
     aaaattaaaa atgccagaaa atcaacaatt atttaaattt gaatatttac agattttacc       420
     ggaatttacc ggaaatcaag ctttattaag cgagttcatt gctacaagtg aacagttaat       480
     taataagttt tacaatgtac aagatgcaaa tgattttcaa aataccttat taataaaatc       540
     gataaaaaat aaaataaaag gtgaagctgc tgctcacata gcttcgtatc aaattaaaaa       600
     ctggaacgac ctcaaaactg cgttattagc aacatacgcg gacaaacgtg acttacagac       660
     gttaaccatc gaattgtgta atttgcgaca aggcaacctg aaaccactag aatttttcac       720
     aagaattcaa gaaaacttga atctgcaaat cagctatatc tcgacccaag tagtcgttac       780
     tgccagagat gcattaattc aaaattcgaa tcatttggcc ctaagagttt ttctaaaaca       840
     tttaaacaac cccttaggag attatttatc cactagacaa ccggcaagtt tgggcgacgc       900
     tttacgaatt ttgaccaatg atttcaacat aaatgacaag accaaattta caaaacccca       960
     aactaatcac aacagaccaa acccaatggt gtacaaaccc ttacctcaac cacaccaaaa      1020
     ttttaaccgt cagcaaaatt tcaaccaaaa ccgaaatcaa tctaacgtat ttaaaccacg      1080
     acaaacccaa ttagacaaac cagttccaat gagtataagt accagaaaca cagttccaaa      1140
     taaaccaaat tataattttc gacaacctca gcaaaattgg tacgcggaag aattgcacaa      1200
     caacgaaaat gaagtaaatg accaatctga aattcaagaa tgtcctgatg ataataatga      1260
     aacaaataac ggtgcatcaa cctcattttt tgaaccaaat tttgaacaat attcagaacc      1320
     ttttttagaa gaagcagcct cggacatgtt gaattattaa atattgacga caacccttca      1380
     caattgcctt atatcgttat accctttcca aactgtaaat taaaatgctt aatcgacact      1440
     ggttccacga aatcgtttat aaatccagaa aaagcaaaac ttcactttgc tagattaata      1500
     aaaaatgacc cgtttattat ttctacagcg cacggttgta caaaagaaca atttagcgtt      1560
     tccataccct gtcccaaaat ttttaaaagt aaaactaaaa tcgttaagtt ccatatattc      1620
     aaatttcaca aatatttcga ttgtttactt ggcattgata atttaaaaca actccaagca      1680
     aacattgacc ttaacttagg caaactcttt cttcccaata cccaaatcga tataaacttt      1740
     aaaaaattat gtgattacaa taatcatatc gaagtcctgc caaattccga acaagtaata      1800
     aaaattaaga ttgcaaacgt taaaaatgga actgcccttt taccaaaaca tacattttca      1860
     gacctagaaa ttcacgaaag tctcattaaa gtcgaaaata atttcgcttt aacgtcgtta      1920
     ataaacccta ctaacaaaca tacaaaagtc gatatctctc atccatttga agtgattcca      1980
     caggaccaat ttgatatacc aaatttaaac atggctacaa ccccagacaa ttctgaacca      2040
     gaaacagatt attcggataa accaatattc gaatatataa aaaaatttaa tcaagaactc      2100
     attaataaag aagatgacat aagttctacc cgcgtagaac ccgataaaga tttagaccaa      2160
     aatatcgatg aaaacgacga taacattaca attcatacta acgaagaaaa ccccgtctgt      2220
     ttaataccta tttctgaaaa cccgttaaat tttggcaaaa atcaaattca attcatttcc      2280
     gttacaaaca atccttcaga tccagtagta atcaaattat ttgaaacttc aaaacaaaga      2340
     ataacagtcc aaatttcacg caatgattcg aaaaataata tcctaaactt tataaaaaat      2400
     tatgttatac cccaagtatc atatgcatgt cacttcgcat cggacgaact ttatgaaata      2460
     accggaaaca ttttaagaga acatttcaat gaatcaatat tatttaaaag gcaccttaaa      2520
     attttagaag acgtcgaatc ccccgaagaa caaattgcta taattcaaaa ctaccattac      2580
     ggtaaatcta atcatcgtgg cattaatgaa accctacaga aaatttcatc acgttactat      2640
     tggcctaaca tgcaaaaagc tattcaaaat tttatcaaca aatgtgaaat atgtaaagct      2700
     gtaaaatacg accgcaaacc attgaagcta aaattcaatt tgactccgac accaaccaaa      2760
     ccattcgaga ttgttcatat agacgtatta aaataccaat cccacaaatt tttaacaatc      2820
     attgatgctt tcagtaaata tgctcaagta tatctactcg aaaacatgca agcaatagaa      2880
     ataatgaaaa aattactgat tttctttagt catcattctg tccccagttt gattgtaact      2940
     gataatggat cagaattcga taacggtgtt ataacagaat ttttccgact tcacaaaatt      3000
     gatgtccatt tctgtagccc tcatcaccca gcaagtaatg gacttataga gcgtttccat      3060
     tcaacatttt tagaacatct aaatttactc aacaatcgtc ctgaattttc taaagaccca      3120
     atctcaacaa aaattttata tgccacaatt gcctataata attccatcca cagtaccaca      3180
     aaactaaccc ctttcaatgt tttgaatttg aacaatgaac aagaaattgg agatattaat      3240
     ttagaatatg taattttaaa caaccattta cagtctcata aagaaaaact gcaaatcatt      3300
     tttaaagaaa ttaacaaacg actaacagaa aacaaaaaaa aattaataac caaattaaat      3360
     gaaaataggg aaaacatacc aactaaatta cctgacacag tcttcgtaaa aagtaatttt      3420
     agatcaaaag ttcgaaaccg atataagaaa gaagaaattt tagagacaaa tcgtgaccgt      3480
     aaaacgataa aacctaaaat caataaatca aaaaccggca gaaaatttaa taaactccat      3540
     atggataatg ttaaacgacc aactaaacaa gaaaattcca ttgcaggtac atcttcgtaa      3600
     cctggctaat ggttaccgtt tcgtcagacc gaaacattac aaataaccct ggcatccttc      3660
     ccataaattt aggtaaagca aggcttcaat cttcttccca tcacatgatc cactattttg      3720
     atatttccgg tcttttaaca gaatataata aattgcaaac ctacttagaa atcgtgaaaa      3780
     actcaacggc taatgaaact gaaactcaaa aagaaattca aaattattta aaaattattc      3840
     attataacat taatcttgta gacgaaaaac tttacccatt tttccaaaat aaacgagcaa      3900
     aaagaggatt agttaacata ttaggatcaa tcataaaaac tattacagga aatatggact      3960
     ccgaagataa tgaaagaata actagtgtca ttaacacaat aaaacaaaat caaaataaca      4020
     tcgcacatca actgactaat caatattcaa ttaatcaaga aataattaat aaattcgaaa      4080
     aaactataaa ggatatcgaa cataacgaga gagcattgta ctcgttaaca tcaaaattcc      4140
     aaaacgtcac aagaaatcaa ataaacactt tatttatcaa agacacctta aaccagctta      4200
     gtcatttatt caatgtaatt ttgaatattg ctcaagatat tgaaaattca ttggcatttt      4260
     gtaaattaca aactgttcac ccaagcataa taacaaatga agaacttttc aaagaacttt      4320
     tgaaaatcga atctatttat aaaaatcatt taccatttcc tgtaaaatct gaaaacattc      4380
     aaaattataa aagaattttg tcaaccaaat gtgtcattaa agaattcgaa ataatttatt      4440
     ttctttcttt tcctttgtac gaaacacgtg aattagaatt attttactta atacctcttc      4500
     cagaccagaa atttcaaaca atcataccat ctgcaaaata tgttttaaaa ggcgagtcct      4560
     atttgtggcc gttaacagac atctgtgaca aaatccaaaa ggaatacttc tgtaaaaatg      4620
     aattaaggac ctatgttaat atttcttgtc aaatggaaat cctatttaaa aacacgttcg      4680
     aaaaatgtct tccaatccag ctcaacaggc tccaaactct cgaattcgtt cccgaaatta      4740
     atcagtatct aggcattttt ccggtaccag tttccatcaa aaacttcttg ctccaatgtt      4800
     ttggcacaac accaaatcca aggtgtcttt ctcttcgaaa atcaactaaa ctgccaaaaa      4860
     tacgtcaatg atcaacttct gatttttaat gacacaactg aaggaaaacc cataatccta      4920
     gaagacttca gacttcccgc aagaaataat gtgaagattc ccaagctaac cttgaggacc      4980
     cttcaagtta caagtttaac taacaacctg cctcgacttc agatgtaccc ctacgaagat      5040
     agcaaaaata tttggcacct aaccggaact gctatattgt attttgtatt tctagcctta      5100
     gccatctggt ttatgatgca gaagatagca tttcggcgaa gaaaccaaac ggaagaagcc      5160
     cctgagccag tagaactacc ccgcgatgcc aaattttagt tcctctccgg agtttcgggc      5220
     taagagggga ggaattata                                                   5239
//
ID   Gypsy-1_TCa-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   chrUn_220;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_TCa_;
KW   Gypsy-1_TCa-I; Gypsy-1_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-155
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_220; Positions     384     538.
XX
SQ   Sequence 155 BP; 55 A; 27 C; 21 G; 52 T; 0 other;
     tgtgcaaaat atccccttag cgcttaatgc ttagtaaaca ttttttatat tataaatata        60
     tgctaaattg tagaggggag acactctatg tctcaccgcg cttgtaatta cttcaaataa       120
     aatttttaaa aaagccaact gcttattcag aaaca                                  155
//
ID   Gypsy-1_TrNi-I repbase;    DNA;    INV; 4088 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4088
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 207-207 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..946
FT                 /product="Gypsy-1_TrNi-I_1p"
FT                 /translation="MSDSSDSVKTAGSRNDGHVTRRKKAVRVSNDGREICR
FT                 AKIKVPPFSPEDPELWFALIEGQFDSHDVTDDGTKFTHVTNNLDIQYAKAV
FT                 KDIIVNPPAQNRYGKIKTELIKRLSASHEKKVKQLLTHEELGDRKPSQFLR
FT                 HLQDLAGPSVPEDFVRSIWCNRLPNNIQTVLASQPTHSLEQLADLADRIQE
FT                 LTSPCSVAATSSHSATASHPSDEIAELKRMVQQLTLKLEEHTRASCCATSS
FT                 RSRPRERLRSSSRQRSRSSSSYKKYTICWFHAKFGERANKCNKPCDYRKAG
FT                 NATGGR"
FT   CDS           901..4062
FT                 /product="Gypsy-1_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QALRLQKSGKCHGRSLMATDDCPSSSGRLFVTDRSTN
FT                 TQFLVDTGSDLCVYPRSALRERRAKTEFQLSAANGSVIDTYGFIELNLNLG
FT                 LRRNFAWRFVVANVTRPIIGVDFLSFYNLIVDCRNQRLIDNTTTLSASASL
FT                 VNANVFSVKVSTGDTRFHNILSKFPEITRPSGTPTVPKHNTLHYIRTTPGP
FT                 PISCTPRRLAPDKLKIARREFELMLSNGTARPSESPWSSPLHLAPKKDNGW
FT                 RPCGDYRMLNARTIPDRYPIRHIHDFAHSIAGCTVFSTIDLMKAYNQIPVF
FT                 EADIQKTAITTPFGLYEFPKMTFGLRNAGQTFQRFVDEMLRGLEFCYAYLD
FT                 DFLVFSKDEAEHEDHLHQLFSRMKKYDVLVNTSKCVFGAREVTFLGYRISA
FT                 SGTKPLESKVQAINDFPVPKTVKQLRRFLGMLNFYRRFLPHSALIQAPLNA
FT                 LLTGRVKASQPVDVSGDALLAFNKCKDSLAHAALLAHPDCHAELALVTDAS
FT                 DLAMGAVLQQLKDDAWQPLAFFSRKLSPSQQKYSPYDRELLAIYESIKYFR
FT                 HMLEARHFVVFTDHKPLSYAFSERKAICSPRQYRHLDYISQFTTDIRHISG
FT                 KDNVVADPLSRIEELQMPIDFDVLAASQATDPELTHLLRGDSSLRLEKLGI
FT                 PNSHAELYCDVSTTSPRPFVPKVLRKQIFDSLHSLSHPGANATAKLVAARF
FT                 VWPGVRKDCRDWSRQCQSCQRAKVHRHVSSPLGSFELPRARFSFIHVDIIG
FT                 PLPISQGYRYCFTAVDRFTRWPEVIPMSDMTAETVGKALISWISRFGCPTD
FT                 IVTDRGRQFESSLFQYLAKMIGFKHRRTTAYHPACNGLVERFHRQLKAAIM
FT                 CHADCNWVDTLPLVLLGIRSAVKDDLKASSAELVYGEPLRLPGEFFQATPI
FT                 DSSDISDFTTRLRQFASKLQPSPASRHNKSKIFMYKDLMTSSHVFLRDDAL
FT                 RGSLQPPYTGPYEVLERSDKTFKIMYKGKTVTVSIDRLKPAYSLIDPTSNP
FT                 IPTHTPSSNPNPGSFPDPAPINQDKPVQDNVRRTRSGRTVRFPDFYRP"
XX
SQ   Sequence 4088 BP; 1047 A; 1134 C; 913 G; 994 T; 0 other;
     actggtgacc cctaaggaca cgaagactga aggttggtac actcgataca aaatgagcga        60
     cagcagtgat tctgtaaaaa cagccggttc gagaaatgac ggccatgtga cgcggcgaaa       120
     gaaggcagtg cgcgtgtcca atgacggacg tgaaatttgt cgcgcgaaaa ttaaagtgcc       180
     gccattctcg cctgaggatc cggaactgtg gttcgccctg attgaaggcc aatttgacag       240
     ccatgacgtc accgacgacg gcacaaaatt cacgcatgtc accaacaacc tggacatcca       300
     gtacgccaaa gctgtgaagg acatcattgt aaaccctcca gcccagaaca ggtatggcaa       360
     aattaaaaca gaactcatca agcgactctc tgcttcgcat gagaaaaagg tcaagcagtt       420
     gctgacgcac gaggagcttg gagacagaaa gccatctcag tttctacggc acctccaaga       480
     cttggccggc ccatctgttc ctgaggactt cgtcaggtct atttggtgca accgtctgcc       540
     aaataacatc cagacagtgc tagcgtcgca gccgacacac tccctggagc agcttgcgga       600
     tttggctgac cgcattcaag agttgacgtc cccatgcagc gtcgccgcga cgtcatcaca       660
     cagtgcaacc gcttcacacc catcggatga gatcgcggag ctgaagagga tggtccagca       720
     actaaccctc aagttggaag agcacactcg tgcttcctgc tgcgcgacct ccagccgctc       780
     gagaccgcgt gaacgactgc gttcatcttc acgtcagaga agccgatcca gctccagcta       840
     taaaaagtac acgatatgct ggttccatgc gaagttcggg gaaagggcta ataagtgtaa       900
     caagccctgc gactacagaa aagcgggaaa tgccacgggc ggtcgctaat ggcgacagac       960
     gattgcccat cttcttcagg tcgccttttc gtcaccgacc gcagcacgaa cacccagttc      1020
     ctggtagaca ccggcagcga cctctgcgtc tacccccgtt ctgcgcttcg agagcgtcgt      1080
     gccaaaacag aatttcagct cagcgcggcc aacggaagcg tcatcgacac ttacggcttt      1140
     attgagctta acttaaatct aggcttaagg cgtaattttg cttggcgttt tgttgtagca      1200
     aatgtaacta gacctattat aggcgttgat ttccttagct tttataactt aattgtagat      1260
     tgccgcaatc aacgcctaat tgataacact accacattat cagccagtgc ttctttagta      1320
     aatgctaatg ttttttcggt taaggtttcg acaggcgaca cgcgctttca caacatcctg      1380
     agcaagtttc cggaaattac acgcccttca ggcacaccaa ccgtcccgaa acacaacacc      1440
     ttgcattata tcaggactac accaggtcct cctatctcat gtacccctcg tagactggca      1500
     cctgataaac tcaaaatagc taggcgtgaa ttcgagctca tgcttagcaa cggcacagcg      1560
     cgtccttctg aaagtccctg gtcttcaccc ttgcaccttg cgcctaagaa ggacaacggc      1620
     tggcgccctt gtggtgatta tcgtatgctt aatgcgcgga ccataccaga ccgttatcct      1680
     attaggcata tccatgactt tgcccactcc attgctggtt gtacagtatt ttccactatt      1740
     gacttgatga aagcttacaa tcagattccg gttttcgagg cagatattca aaagactgcc      1800
     atcaccacac cctttggctt gtacgaattt cccaaaatga ccttcggact gagaaatgca      1860
     ggtcaaacat ttcagaggtt tgttgacgaa atgttgagag gcctcgagtt ttgttatgcc      1920
     tacttagatg actttttagt cttctccaag gacgaggccg agcacgaaga ccatcttcat      1980
     cagctcttca gtcgcatgaa gaaatatgac gtcctcgtca acacctccaa atgtgtcttc      2040
     ggcgcacgcg aggtaacatt tttaggctac cggatctcgg catctggcac caaacccctg      2100
     gaatccaagg tacaggcaat caatgacttc cctgtcccta agacagtcaa acaattgagg      2160
     cgatttttag gcatgctcaa tttttacagg cggttcttac cacactctgc tttaattcaa      2220
     gcccctttaa atgccttgct tacaggccgt gtaaaggcat cacaacctgt cgacgtgtct      2280
     ggcgatgcgc ttttagcttt caacaagtgc aaagacagtc tcgcccatgc agcattactc      2340
     gcacacccag attgtcacgc cgaactcgcc ctggtaacag acgcatctga cctggcaatg      2400
     ggtgcagttc tgcagcagct taaagacgac gcctggcagc ctctggcatt cttctcgcgg      2460
     aaattgagtc cctcgcaaca aaagtactca ccctacgacc gcgagctctt agccatatac      2520
     gaaagtatta aatactttcg tcatatgcta gaggcaagac acttcgtggt attcactgac      2580
     cacaaaccgc tcagttacgc tttcagcgaa cgtaaagcta tctgttcgcc ccggcagtac      2640
     cgccacctcg attacatctc gcagttcaca accgatatcc gacacatttc gggaaaggac      2700
     aatgttgtcg ctgacccact gtcgcgcatc gaggaactgc agatgccaat cgattttgac      2760
     gtactggctg cctcccaagc gactgatccg gagttgactc atcttctacg gggagattct      2820
     tcactccggc tggagaagtt gggtatccct aactcccatg ctgaacttta ttgtgacgtc      2880
     agtaccacct cacccaggcc gtttgtcccc aaagtgttga gaaaacaaat cttcgacagc      2940
     ctccacagtc ttagccaccc tggcgccaac gctacggcta aactggtggc tgcccggttt      3000
     gtttggcctg gggtacgcaa agattgtcga gactggtccc gacaatgcca gtcttgccaa      3060
     cgcgctaagg ttcatcgcca tgtatcttct ccacttggct cgttcgaact tccgcgcgct      3120
     cgattttcct ttatccacgt ggacattatt ggccctctcc ctatctcgca gggataccgc      3180
     tactgtttca ccgctgtaga tcgtttcaca cgctggccag aggtcatacc gatgtcggat      3240
     atgacagctg aaacagtcgg gaaggcattg atatcgtgga tatccaggtt tggatgtcca      3300
     acagatattg tcactgatcg cggccgacag tttgaatctt cactttttca atatctcgca      3360
     aaaatgattg gattcaaaca tcgtagaaca accgcgtatc acccagcttg taacgggctc      3420
     gtggaaagat tccaccgaca gttaaaggca gccataatgt gccacgcaga ttgcaattgg      3480
     gtagacacgt tgcccttggt gctattaggc attaggagcg cagttaaaga tgacctcaaa      3540
     gcgtcatcag ccgagctggt ttacggcgag ccgttacgtt tgcctggaga atttttccaa      3600
     gcgaccccta tcgattcctc cgatatatcg gacttcacca ctcggctgcg ccaatttgca      3660
     tcaaaactgc aaccgtcacc ggcctcacgt cacaataagt ccaaaatatt tatgtacaaa      3720
     gatttaatga catcaagtca cgtatttttg agggacgacg cattacgtgg gtctttacaa      3780
     cccccttaca ccggccccta tgaagtatta gaacgaagtg acaaaacttt caaaattatg      3840
     tataagggta aaaccgtcac agtgtctata gaccgcctta agccggccta ctcactgatt      3900
     gacccaactt ccaaccctat ccccactcac actccttctt ctaaccccaa ccccggttcc      3960
     ttccctgatc ctgctcctat taaccaagac aagccagttc aggataacgt cagaaggacg      4020
     cgttcaggcc gcacagttcg ttttcctgat ttttatcgcc cgtagtgacg gtctctgggg      4080
     gggagtga                                                               4088
//
ID   Gypsy-1_TrNi-LTR repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-595
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 246-246 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 595 BP; 171 A; 151 C; 91 G; 182 T; 0 other;
     tgtagcctac tcagtcacac atttacaaac aatacatata taatttacta tatttatatc        60
     tacacgtaac aaattcattt ttaattcata tttatttaaa atatattata cataaaaagc       120
     cttattacct atatacatat atttacaata ataacaaaat atcagtacac ataaaactac       180
     taattatcta atactacggc atacacattg cggcgaggcg cattggaaac gcgttgcatc       240
     tccggttgga accggatcgg tcttacgtcc ggcgcgcgcg ccgctactca ccgcgccgcg       300
     ccagtcggcc acttatctcg ctcgcgaagc ctgtgtcgcc cgctaaccga atgctgtacg       360
     gctaccgcac gcaccagcgt gttattgtta atattttcgt catcactatc gcttgcctat       420
     ccacctttct ccttcaagca ctccttctat tctatagctc tgcttgtgct ataagactgt       480
     gtgtatgtga actatgtgtg attgaacaat ataaatatta cgtgtagtga agttgttgga       540
     acttttattt atccgaaccc tcttgacgaa caccacatca cccatccaca ccaca            595
//
ID   Gypsy-1_TrVa-I repbase;    DNA;    INV; 5640 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_TrVa-LTR; Gypsy-1_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5640
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 247-247 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           862..5301
FT                 /product="Gypsy-1_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPNDQDENTTNPTPNNSRKSNFDLSMCIPMSFKGDLA
FT                 VNWKDFKSSFTIFLLAAGLDEENDARKNALLISCMGQQCTPVFKSFDVDVL
FT                 TIKHKDLIDKFEKHFSPKVNVTVERLTLFSRRQKTNETFEEFLTALRNLSK
FT                 HCQLDTLRESIIKDLFIGGMNSSNEKIKIELLSSSETDLTKIFNLAQTLQL
FT                 SKENSEKLSQSSVNSIASSSKSGPNHMSQRRSFSRSPSPRIRHSSPYRQGS
FT                 PHPRRSYQHRQSSPHRRSSRHQRSSPYRSPSPHHRSSPYRHSSPRHSRSPN
FT                 RQQCPNCGQHHRYRCPARDVECRACRKYGHYSRMCPNKAVNSIRVSDLNDS
FT                 DILFVGEINKAPKAKKKWFIPIFINNQQIEARVDTGAETNLISEKLFNNLN
FT                 LQKECALQPTRVQINTFTHQPIDILGEINLNICYKNRNINDIFHVTKLVCT
FT                 PIIGLTLAEELGLVSIVNQVNKDSETNYQSILKEYKAVFNTKDSIGCISDR
FT                 EVHLEIDPTVKPVNDPPRKIPLKSRIALKKHLKELVKLNIIEPVKGYTPWT
FT                 NSLVIVHRKDNSIRLCLDPRNLNKAIKRPIHCLPDTDFIRSELRNAKYFTK
FT                 LDIKNGFWNLKLNKESSELCTFNSPYGRFKFLRLPFGISSANDIFQAEMVE
FT                 QFKDIPGLIIYVDDFLIYAKNREEHDRILKQVLQRAAELGIKFNRPKCKFF
FT                 QLEIEFLGEVYSLNKIKIDPERVIAIQKMNPPKNVTELQRFLGIVNFLRSF
FT                 IHNLSAKTHNLRQLLKKQNLWEWTPTHNEEFENLKTEITNAPVLTNFDINL
FT                 PILLSVDASKDALGATIMQESKPIAFASTTLTNAQQTWGQIEKELLGIFFG
FT                 CTKFHQYMFGQIVHVETDHKPLETLFKKQYKDVPIRLQRVMLKLERYNIQV
FT                 KWVPGKKLAIADALSRAPLKDNVERSDELQCELDCQIAALDQTIALSFSEN
FT                 KLNEFKAETFKDETLNILKDYYFNGWPGTKSKCHNLAKPFFNVRHEIFVKD
FT                 NLLFKINAIIVPRSLQSNVLKIIHEGHMGFESSSRRAKGVVYWPFLKSDLK
FT                 NLTDSCSVCIKHSNANPKQPITPHEIPLIPWQKIGADFIEVKNQKSLIVVD
FT                 YYSKYPEVISMGQATSDKYVIPALKSVFARFGIPKNLVSDNGPPFNADSFK
FT                 KFCESWDIQHDFSSPHYPQSNGMVERTIQSVKKLMIKCLENNEDFHLALLH
FT                 FRNTPKSDAPSPSELLMSRKLRSTLPCTEEQLYPKNIDRTEYEQTLAKRSE
FT                 KMIQRTSHLKPLGSLGVNDRIYFKKTPKDVWSPGFISRVCNEPNSYEITAP
FT                 NGKIYRRTRYHIKSHPKSVSFSFDEKQDKENSTVEKGTFKFQPSSDDFNQN
FT                 NKESTIRLKIDLKPSKSKVDDKISINPPSAVSSPELIDLSDSEYSTPLTNK
FT                 SSSNCANSIPPPQSSHSIKTKGREVGKTTPLCSASSSSVRGRGRRITETLK
FT                 SPSKRRVKAPNRYSP"
XX
SQ   Sequence 5640 BP; 1829 A; 1177 C; 902 G; 1732 T; 0 other;
     tggtgtcagg tgtgcggtaa atcgtcaaat ctttttcttt tgcgagtata cgtgcggtga        60
     actcgcccgc ctcgttttag ctttcgttct tttcttttag ttctttcatt atgtcctgat       120
     tatgtctatt ttaaatcctt aacttttaaa tccttaacct caatttcgtc gccgaaccac       180
     gtgtggccta aaatgtcgat attttatttc ttgttaaatc tagtcagtga tcggtctcgc       240
     ccatacatcc tcatttaaaa atcgtttttt cctaaatgcc gtcaaaagtc gtctcaaagt       300
     cacggtattc gtcggagtca cgtgaaactt agctcgttca gtcagcagcc tatacctcat       360
     ccatgaccca gtccgcaatc gtcgtagtct tcaagtcaaa gatatctatc tagtctgtct       420
     catcatgtcc aagtctgtgg ttctaagccg tcaagttcat gtctgtccat gagttctcgc       480
     caatttaacg tctgtctgtc tagtcataga gtcatcttat ctcgtcctgt caactcaagt       540
     gagtcgctaa tgatgaatca gtcatcccca gtgcaagtca tccagtctcg tcaaatgtaa       600
     gtcttccagt cacgttaagt ccaagtcttt caatcacgtc aagtccaagc ctttcagtca       660
     cgtcaagtct aatccatcct gtcacgtctc acgagtcaca gtcatattgt ctcgtcacgt       720
     caaccgagtt tacttactac ctttaaccaa caaatcagtt catctctaag tctgtctgtc       780
     tcgtttaaat tgtcaagctt ctctatctag ctgtttcgta ccttcttgcc atctatcgaa       840
     gcagtatcat tgcaaatcaa aatgcccaat gaccaagatg aaaatacaac caaccctact       900
     cctaacaact ctcgtaagtc aaattttgac ttatcaatgt gcattccaat gtcgttcaaa       960
     ggagaccttg ctgttaattg gaaagatttc aaatctagtt tcacaatctt tctgttagcc      1020
     gcaggactcg atgaagaaaa tgatgcacgt aaaaatgcat tactaattag ctgcatgggt      1080
     caacaatgca ctcccgtctt caaatctttc gatgtggatg tcttaactat aaaacacaaa      1140
     gacctaattg ataaatttga aaaacatttt tcaccgaaag tgaatgtcac cgtggaacga      1200
     ctgactctat tcagccgcag acagaaaact aatgagactt ttgaagagtt cttgacagca      1260
     ttaagaaacc taagcaaaca ctgtcaacta gacactctgc gagaaagcat catcaaagac      1320
     cttttcatcg gaggcatgaa ttcctctaat gaaaaaatca aaatagagct tctcagttcc      1380
     tctgaaacag atttaactaa aatttttaac cttgcacaaa ctttgcaact gtccaaagaa      1440
     aactcggaaa aactaagcca atccagtgtc aactcaattg cttcatcttc taaatcaggt      1500
     ccaaatcaca tgtctcaacg ccgtagtttc agccgatctc catcacctag aattcgccat      1560
     tcatcaccct atcgtcaagg atcacctcat cctcgccgat cttatcaaca tcgtcaatca      1620
     tcgccccata gaagatcgtc acgtcaccaa agatcgtctc cttaccgaag tccatcgcca      1680
     catcaccgtt cttcaccata cagacactct tcacctcgtc actcaagaag tccgaatcga      1740
     caacagtgcc ccaactgcgg tcaacatcat cgatacagat gtcccgccag agatgttgag      1800
     tgccgtgcgt gtagaaaata tggtcattat tctagaatgt gtcctaataa agcagtgaat      1860
     agtattcgcg taagtgatct taatgattcc gatattctct tcgtcggtga aattaataaa      1920
     gctcctaaag ctaagaaaaa atggttcatc cccatcttta ttaataacca gcaaatcgaa      1980
     gcgagagtcg atacgggtgc tgaaacaaat ctaatctcag aaaagttgtt caataattta      2040
     aatttacaaa aagaatgtgc gctgcaacca actcgcgttc aaatcaacac cttcacgcat      2100
     caacccatcg atattcttgg tgagataaat ttaaatattt gttataaaaa tagaaatatc      2160
     aacgatattt ttcatgttac caaactagta tgtactccta taattggtct tacccttgct      2220
     gaagaattag gactagttag cattgttaat caagtcaata aagactcgga aacaaattac      2280
     caatccattc tgaaagaata taaagctgtt tttaacacta aggacagcat tggctgtatt      2340
     agtgatagag aggttcacct tgagatagat cctactgtta aacctgttaa tgatcctccc      2400
     aggaagattc ccctaaaatc tagaattgct ctaaaaaagc atcttaagga acttgtcaaa      2460
     cttaacatca tagagcccgt aaaaggttac actccgtgga ctaattctct tgttatcgtt      2520
     catcgtaaag acaactctat ccgtttatgt cttgatccaa gaaatctaaa caaggccatt      2580
     aaacgtccta tacattgtct tccagatact gacttcatca gatctgagtt gcgaaatgct      2640
     aaatatttta ccaaacttga tataaaaaat ggtttttgga atttgaaact taacaaagaa      2700
     agttctgagc tgtgtacctt caactctcca tatggtaggt ttaaattctt gaggttaccc      2760
     tttggtattt cttcagccaa tgatattttt caggctgaaa tggtggaaca atttaaagat      2820
     attcctggtc tcattatcta cgttgatgat tttttgatct acgctaaaaa cagagaagaa      2880
     catgatagga ttctgaaaca ggttctgcaa agagccgcag aacttggtat taaatttaat      2940
     cgtccaaaat gtaaattttt tcaactagaa attgagttct taggtgaggt atactctctt      3000
     aataaaatca aaattgaccc cgaaagagtt attgctattc aaaaaatgaa tccgcccaaa      3060
     aatgtaacgg aattacaaag atttttaggt attgttaact ttcttcgttc tttcattcac      3120
     aatttgtctg ctaaaacaca taacctacgt cagcttttga aaaaacaaaa tctgtgggaa      3180
     tggacgccca ctcataacga agagtttgaa aatcttaaaa ctgaaattac caatgccccc      3240
     gtattaacga actttgatat caacttacct atcctattgt cagttgatgc ctctaaggat      3300
     gcattaggtg ctactatcat gcaagaatct aaacccattg cttttgcctc tacaactctt      3360
     accaatgccc aacaaacttg gggacaaata gaaaaagagc tccttggaat ttttttcggt      3420
     tgtactaaat ttcatcaata tatgtttgga caaattgtac atgtagaaac agaccacaaa      3480
     ccattagaaa cattatttaa aaaacaatat aaagatgttc ctatccggtt acaaagagta      3540
     atgctaaaac ttgaacgcta taacattcaa gtcaagtggg ttccagggaa aaaacttgct      3600
     atagcagatg ctcttagtcg agcacccctt aaagataatg ttgaacgttc agacgaatta      3660
     cagtgtgagt tagattgcca gattgctgct ctagatcaaa ccatcgctct gtctttcagt      3720
     gaaaataaac tgaatgagtt taaagctgaa acgttcaaag acgaaacttt aaatatctta      3780
     aaagattatt attttaatgg atggcctggc acaaaatcta agtgtcataa tcttgccaaa      3840
     ccatttttca atgtaagaca tgaaattttt gtcaaagaca atttgctttt taaaattaat      3900
     gctatcattg tacctagatc actacaatca aatgttttaa aaataattca tgaaggtcac      3960
     atgggtttcg aatcatctag ccgccgagcc aaaggagttg tctactggcc ctttctaaag      4020
     tccgatctta aaaatttaac tgacagctgt tcagtctgta ttaaacattc taacgcaaat      4080
     ccgaaacaac ccataacacc tcatgaaatt ccactcattc catggcaaaa aattggcgct      4140
     gatttcatag aagttaagaa tcaaaaatct ttgattgtag tggactatta ttctaagtat      4200
     cctgaggtca tttcaatggg tcaagcgact agtgataaat atgtaattcc agctctcaaa      4260
     tcggttttcg cgagatttgg tattccaaag aatctcgtta gtgataacgg tcctccgttt      4320
     aatgcagatt ctttcaaaaa attctgtgaa tcttgggata tccaacatga tttttcatca      4380
     cctcactatc cgcagtcaaa tggtatggtg gaacgtacaa tacaatctgt caaaaaactt      4440
     atgattaaat gccttgaaaa taatgaagat ttccatcttg ctcttctaca tttccggaac      4500
     actcctaaaa gtgatgctcc ttcacctagt gaattattaa tgtctcgtaa actgcgatcc      4560
     accttaccat gcactgaaga acagttgtat cctaagaata ttgaccgtac tgaatatgag      4620
     caaaccctag caaaacgctc agaaaaaatg atccaaagaa catcccacct aaaaccccta      4680
     ggttcacttg gagtaaatga taggatttat tttaaaaaga cacctaagga tgtgtggtca      4740
     ccaggtttta tatcacgagt ttgcaacgaa cctaattcat atgaaataac tgcaccaaat      4800
     ggaaaaatct acagacgtac tagataccac ataaagtctc atcctaaaag tgtctcattt      4860
     agcttcgacg aaaagcaaga taaagaaaat agtacagttg aaaaaggaac atttaaattc      4920
     caaccatcat ctgatgattt caatcagaat aataaggaga gcacaattag gcttaaaatt      4980
     gacctgaagc catcaaaatc taaagtggat gataaaatat caattaatcc tccctcagca      5040
     gtttcaagtc ctgaactcat tgacttgtct gattctgaat attccacccc tctcacaaat      5100
     aaatctagtt ccaactgtgc taattctata ccaccccctc aatctagtca ttcgattaaa      5160
     accaaaggtc gagaagtagg taaaactacg ccattatgta gtgcctctag ttcctccgtc      5220
     agaggaagag gtaggaggat aaccgaaaca ttaaagtcac cttccaaacg aagagtgaaa      5280
     gcacccaaca ggtattcgcc ttaattgtat cttttagtga aataattaaa ttgctcattg      5340
     tgatatgctt aaatacttaa taattctcag gtatctgatt ttcttttatt taatgtaatt      5400
     tgttgaaaca attcttaatg ttttatcttg ccccctgtgg tagattctct caaatgtttt      5460
     gtcgtgtctt attttaaatg atcttacaag attgtgataa atctttagct ttgtaattgt      5520
     gataaatctt tagctttgta attgtgataa atctttagct ttgtaattgt gataaatctt      5580
     tagctttgta aataggcgca aatatttttt tttactgttt tttctataaa aaaggaagga      5640
//
ID   Gypsy-1_TrVa-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-1_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-155
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 230-230 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 155 BP; 36 A; 39 C; 35 G; 45 T; 0 other;
     tgttggtagt atagcttagt gctcctgcca cttgaggcag cactgtcgac ctagccgtcc        60
     ggggttgtcg ggcaaggcga tcctataata aatatcatat attcttcacg gtcccaatgg       120
     cgtagtcatg actttcaata tcctctcgat caaca                                  155
//
ID   Gypsy-20-I_NVi repbase;    DNA;    INV; 10691 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-20-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10691
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 777-777 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           9093..10262
FT                 /product="Gypsy-20-I_NVi_2p"
FT                 /translation="MLNKRPIVNFDLFTYVNSKFVYVEKHFRGQFKNLYLN
FT                 MLKEECELERKVIQNSLSLASVSPDEFAYNIMQKPGYIARLAGEAIHIIKC
FT                 TPVEVKIQHTDYCYTQLTVSSGNKTMFLTPKTHILLKKGTQINCNSIVPQY
FT                 FKIGDNWINLMPAPRKSNNIIKTLKPSTKIAWQPEKLNSLATSGIYSQEDL
FT                 QKLQQHIMFPMERASLLNTIARGMQGEETVQGGLISNLLTENTLMNIAEST
FT                 WNRFMDKLVRFGSISSAIIMIFIIIHISKLAIDIIIRGYTLHAMYGWTLHL
FT                 LGAIFSSITHLLIVMRRNDIIVNDDNKQTPTTNPQDIQLQEIVVQNPISPK
FT                 KEISPPIPIHPPNSKTYINQPIESKVESKVESKPESKISLFSLKPF*"
FT   CDS           join(1385..3673,3637..4359,4363..5811,5780..7693)
FT                 /product="Gypsy-20-I_NVi_1p"
FT                 /translation="MSDNQKNLLGQKLTRSVVRNNPTLQNQIIIPNNQTPF
FT                 ARSKKIIRSPPANNTTAQGRDEEAVTNTEKLNDTIAKNIEKIDQEINLEQT
FT                 NKENSTGAIKKEISRLNKAHLTINIPTTPNKQESTEISKKEQKVAAVTPIT
FT                 PLTAIRKAEDWKFDNSLKQDISLIDIEGFNEQPSLIGNLNNSQSKFNFNFN
FT                 LDSILDNTMVVGGLGNKQQQQQQAPQQLRLSLKYVANLIPEFDGKCMSVNE
FT                 YVEKLKHAKNMLSETDQANLIPILKMKLKGDVYRAMLNAQINNIQDFIKAV
FT                 RQIYPSTDKMATLYGKIAESLQNPDETVLSFANRLQELVLQVKDSKEVEAY
FT                 TAEEKQXFETKIDAETLLAFVEGLRQEIRLELGATRNLGDAIQKAIEVETR
FT                 LNRRDLIFGKANKVFCSLSNQVAISGDTSVAIYSCQICQDYGHEALFCHKV
FT                 ACVYCKNKDHLSDSCRIVKKKIQLICKFCNNHGHSIDACKMNRIKGNHCQY
FT                 CQVMGHTVTQCPFIIEYELCWKCKESGHDPNNCKNQGKQSETCEFCNGTTH
FT                 TIKDCPDVTCKRCNQRGHVLKYCPILMDRKFLMCAICNKNDHEAEQCKEAK
FT                 ILVAQNRAKACQQDIQCQIGNEIGHLGKYYPKFMAQQQATNNANASYKNRN
FT                 YNNYNNNYRKSNNFNNQNKNTSKPNWKQISCEYCKIRGHPIQECRKLKNLE
FT                 NMAQERKNCSYCKEDGHTVENCQEIKALESRANKFCSYCKNTNHMTEECFK
FT                 LQNQQMNRVGNDIAESANESCGKRLKPSRGEWTRSNKANALETNTDTANLI
FT                 KTRDTYEKNVLNTEKSEKCENEANITDIEKLEVYHIKLDDRLEYIEITNPY
FT                 TIKSCSLLVDSGAQINIIKLGQISPEAQLQDKKILLTGITSKQIKTLGIVK
FT                 LPINNKYFDFHVAPEEFDIPYDGILGIKLLRESKLRLDEGYLEINDIKLKL
FT                 QSGPIKKIYTYMEQVQNKDQNARVGINNDQKKFLNRILKEIIDENDIYIKN
FT                 IIKIYIXMYIXIYIYEGVNENKWSESKAENECKENITHQSNKQISVNESME
FT                 QEAENFDNTKDFEKNEIAIENTFYDDVKTVLNTITKEYEVSNDTQAEIINE
FT                 NNKEKNKPENFREFLETDNKNIENFIYNINVGLQEEQNSQEISAKAKECDF
FT                 KDILTTMKETGEKLSKAEEKLMFDGKEYQYISFDIDYIPEGAQLVDELGIE
FT                 ESLILNIEAIDAFEKTKQGKLKKPNRQEVLRKKLQMKNGGKRNQERIERIT
FT                 NKYPDVFWIEGDELGTCNVEQHEINLTTDKPIYVKQFPLEHKKKGIAISET
FT                 KKLVINKAIRNTKSPFNAPALVVPKKELVTGEKRYRLVIDYRALNEVTIAD
FT                 PYLLPNINEILDLIGNKKYFDVLDLKSGFHQVKMRPSDIEKTAFSVQPLGR
FT                 FEFLVLPFGLKNSARTFQRVINTVLAEYINKICYNYIDDIIIFGDSTEELD
FT                 ERFNLIAEALIAGRIKIRTRKMQAGLKLEPEKCEFGKTEVCFLGHIISEAG
FT                 IRPDEKKIEAVKXFPIPKNVKGVRQFLGFANYYRRFIKNLADITKPLTILL
FT                 QKDRPFIWKEEQQKAFDKLVKMLCSAPVLQYPQFDKPFIITSDASQYALGC
FT                 VISQGEIGKDRPIAYASRVLQPAEMKYATYEKEALAIMYAIKTFKSYIYGN
FT                 KFVIVTDHKPLVWLKSADNNERVQRWRLKLLDYEYEIIYKAGKQNTNADAL
FT                 SRNPVAEAGICVITRAQKKREENKIRQELTNEDKIKIVNEQKTKINKKKLK
FT                 IKNRKRRKIKGPKNRIACDVEKQESKQKNVVYSKNAIQFRKDNVIHLINNN
FT                 GESLDENTANLLKNIYWDKSLDSNEIEIINKGNNKIFVLCLNTAESAITVK
FT                 TNLINLFKLLRTICLQKNYAIFSISKDIKITNISWDEIEEILKDIFNETNI
FT                 KVIICLNNIIYIDIDKRDKIFEMLHATKIGGHSGVNRTYNRIKDKYYWENL
FT                 KVDIQKRIQRCEECQRNKLKRIKTKQPMIITDTPLKTFDKISMDIVGPVNV
FT                 TKNNNKYILSIQDQLTKFIVIVSLPDQTAESVADALIKKFICIFGSPKLVL
FT                 TDRGANFTSKLIKQIARRFKFKKVETTAFSPQSNGSLERAHLRYTNI*"
XX
SQ   Sequence 10691 BP; 4515 A; 1523 C; 1854 G; 2787 T; 12 other;
     ktggttccgg tacgaatcga acgctagacg tttgtaaaaa aaaagtaaaa atcttgcaaa        60
     cagataaaat atatcagtgt gttatactaa aaaaaagtga taataacaat ggttctaatt       120
     agaacwtaaa acatatataa atgcaataaa aacaactaca aaagcaatct aaaaataaga       180
     cakaaattct aaaagtgaca gtgttttaaa accgtataaa tcaagttttt tgcctagtgc       240
     gagtgtaacc ctttcctcaa gtttgcttag tagcaacttt cccctagatc tgctaaaata       300
     gcggtcagtc ttcttgatcc taaagctcgc tgaaaagcga catatcctgt gatctgctta       360
     aatagcgatt actcatttcc taaaaagcac ataaaggcac gaaaaccctc tagccataaa       420
     aatacggttt atgaacggat ttataaactt atatctaaat aaacggaaat aaataaaata       480
     taaagagtac aaaagcaatc agaacaatag aaatataaaa tctaaagatt acaaaaacaa       540
     tcagaacaat agaaatataa aatcgcgagt tcacaaaaaa atttaggtga gtgacctgct       600
     tgcgctcatc ggcgatcgcg ctcaccttac gctgcagtgt cagcaaggtg atagaacgca       660
     gcgcttcgga tctatacagc gcttgtgtca gtttaaaaac caggtcaatt caaaatattc       720
     gaaacatatg taaagcaatt aatttcgtgc attttccaat ctgccgtgta attagtgaat       780
     tcatttatcg atataaaagc acgttatttc attcaatgaa ggataatact agtgtagtaa       840
     atacggtaaa aaagaataat cacaaaagag gcggtaaaaa gatattttta cggaaactat       900
     taaatgaaaa atctaaatta atagaagaat taagacaatt aaacaagaaa atagattcat       960
     ttttccgatc gcaagaagtt aagcagccaa aaatagtaaa caaccaagta gaacgatcgg      1020
     agtttcaaat agaaatcggc aacaaatttg aagagttatt taattttgct atgactgaat      1080
     tgaataaaaa taaataaatt ttagattgta gaatcacgaa aaatcagttt aaagcctaaa      1140
     accgttcaaa gaacacttat atagcagagt cgagtcaaat tactgtatca cgcgtatagc      1200
     cgcggtaaat gaactgacca aaacttgtgt agtttgcaaa aacgcgaaaa gtaggtcgcg      1260
     tattgtaaaa taagtagaac agcaaaatta cattcgaatt atttgtaygc gatttaaaaa      1320
     tcaaaaattc aggctgaata aaattttata ataaataaaa agataactaa aatgagagca      1380
     ccaaatgagt gacaatcaga aaaatctact agggcaaaaa ttaacaagga gcgttgttcg      1440
     taataatcct acattacaga atcaaataat aatccctaac aatcaaacgc catttgcgag      1500
     aagtaagaaa ataattcgat caccgccagc aaataataca actgcacaag gaagagacga      1560
     agaagcagta accaatactg aaaaattaaa tgatacaata gctaaaaata tagaaaaaat      1620
     agaccaagaa ataaatttag aacagacaaa caaagagaat tccacggggg caataaaaaa      1680
     ggagatttca aggcttaaca aagcccattt aaccattaat ataccaacta cacctaataa      1740
     acaggaatca accgaaatat ctaaaaaaga acaaaaagta gcagcagtaa caccaataac      1800
     accgttgaca gcgattagaa aagcagaaga ttggaaattc gataatagtt tgaaacagga      1860
     catatcgttg atagacatcg aaggttttaa cgagcaacca agcctaatcg gcaacctaaa      1920
     taattcacag agtaaattca actttaattt taatttagac agtatattag ataacaccat      1980
     ggtggttggt gggctaggta ataaacaaca acaacaacaa caagcgccac agcagttgcg      2040
     tttatcgcta aaatatgtag ctaatctaat accagaattt gacggaaaat gtatgtcggt      2100
     taatgaatac gtagaaaaat taaaacatgc aaaaaacatg ttatcagaga ccgatcaagc      2160
     aaatttaatt ccaatactaa aaatgaaact aaaaggcgac gtatataggg ctatgttaaa      2220
     tgcacaaatt aataatattc aagattttat caaagctgtg cgacagattt atccatcaac      2280
     tgataaaatg gcaactcttt atggaaaaat agcagaaagt ttgcaaaatc cagacgaaac      2340
     ggtactcagt tttgctaata gattgcaaga attagtattg caagtaaagg acagcaagga      2400
     agtagaagca tatacagcag aagaaaaaca aarttttgaa actaaaatag atgctgaaac      2460
     tctattagca tttgtagaag gattacggca ggaaatacgt ctagaattag gagcaacaag      2520
     gaatttaggt gatgctatac aaaaagcaat agaagtagag acgagattaa acagaagaga      2580
     tttgatattt ggtaaagcaa ataaagtatt ttgcagttta agcaatcaag tggctatatc      2640
     aggagataca agcgttgcca tatactcgtg tcaaatttgt caagattatg gacatgaggc      2700
     attgttttgt cataaagtag cgtgtgttta ctgcaaaaat aaagaycatt tgtcagatag      2760
     ctgcagaata gtaaaaaaga agattcaatt aatttgtaaa ttctgcaata atcacgggca      2820
     ttcaattgat gcctgcaaaa tgaatagaat taaaggcaat cattgccaat attgccaagt      2880
     watgggtcat actgtaactc aatgcccatt tataatagaa tacgaactgt gttggaaatg      2940
     caaagaaagc ggacatgatc ctaataattg taaaaatcaa ggaaaacaaa gtgaaacgtg      3000
     tgaattctgc aatggcacaa ctcatacaat aaaagattgc ccagatgtaa catgcaaaag      3060
     atgtaatcaa cggggacatg tattgaaata ctgtccaata ttaatggata gaaaatttct      3120
     aatgtgtgca atttgtaata aaaatgatca tgaagctgaa caatgtaaag aagctaaaat      3180
     attagtagca cagaatagag cgaaagcatg tcaacaggat atccaatgcc agattggcaa      3240
     cgaaataggt catttgggaa aatactaccc caaattcatg gctcagcaac aagctacgaa      3300
     taatgccaac gcctcgtata aaaatcgaaa ttataacaac tataataata actatagaaa      3360
     aagcaacaat ttcaataatc agaacaaaaa tacaagtaag cctaattgga aacaaataag      3420
     ctgcgagtat tgtaaaataa gaggacatcc aatacaagag tgcagaaaat taaagaatct      3480
     agagaatatg gctcaagagc ggaaaaattg cagttattgt aaagaagatg gacacacagt      3540
     ggaaaattgt caggaaatca aggcattgga atcaagggca aataaatttt gtagctattg      3600
     caaaaatacg aaccatatga cagaggaatg ctttaaattg cagaatcagc aaatgaatcg      3660
     tgtgggaaac gactaaagcc ttctcggggc gagtggacga ggagtaataa ggctaatgca      3720
     ctcgaaacaa atactgacac agcaaattta ataaaaacaa gagatacata tgaaaaaaat      3780
     gttctaaaca cagagaagtc ggagaaatgc gagaacgaag cgaatattac ggatatcgag      3840
     aaactagaag tatatcacat aaagttagat gatcgattag aatatattga gattacaaat      3900
     ccatacacaa taaaatcatg tagcctactc gttgatagtg gtgcacaaat aaatataatt      3960
     aaattaggtc aaatttctcc ggaggcgcaa ttacaagata aaaaaatatt gttgacagga      4020
     ataacaagca agcagataaa aactctagga atagttaaac taccaataaa taataaatat      4080
     tttgattttc atgtagcacc agaggaattt gacattccgt acgatggcat tttaggaatt      4140
     aaattactca gagaaagtaa attacgctta gatgaaggat atttagagat aaatgacata      4200
     aaattaaaac tacaaagtgg accaattaag aagatataca cgtatatgga gcaagtacaa      4260
     aacaaggatc agaatgcaag agtgggaata aataacgatc aaaagaaatt tctcaataga      4320
     attttaaaag aaatcattga tgaaaatgat atatatatat agaaaaatat aataaaaata      4380
     tacatatawa tgtatatatw gatatatata tatgaaggcg taaatgaaaa taagtggagc      4440
     gagagtaaag ctgaaaatga atgtaaagaa aatataactc atcagagtaa taaacaaatc      4500
     agtgtaaatg agagcatgga gcaagaggca gaaaatttcg acaatacaaa agatttcgaa      4560
     aaaaatgaaa tagcgataga aaatactttt tatgatgatg tgaaaacagt cctgaataca      4620
     ataactaaag aatatgaagt cagtaatgat actcaggcgg aaataataaa cgaaaataac      4680
     aaagagaaaa acaagccaga aaattttaga gaatttttgg aaaccgataa taagaatatt      4740
     gaaaatttta tatataacat taacgtagga ttgcaagagg agcaaaactc gcaagaaatc      4800
     agtgcaaaag caaaagaatg tgatttcaag gacatattaa caacaatgaa agaaactgga      4860
     gaaaaattgt caaaagccga agaaaaattg atgtttgatg gaaaagaata tcaatatata      4920
     tcattcgata ttgactatat tcctgaagga gctcaattag tggacgaact gggcatagag      4980
     gagagtttaa ttttaaatat agaagcaatc gatgcatttg agaaaactaa acaaggcaaa      5040
     ctcaagaagc ctaataggca ggaagtatta cgaaagaaat tacagatgaa aaatggtggt      5100
     aaaaggaatc aagaaagaat tgaacgaatc acaaataaat atccagatgt gttctggatc      5160
     gaaggagatg aattaggaac gtgtaacgta gaacaacatg aaataaattt aacaacagat      5220
     aaacctattt atgtaaagca gtttccatta gagcacaaaa agaaagggat tgccatcagt      5280
     gaaacaaaga aattagtcat aaataaagca atccgaaata caaaaagccc attcaatgca      5340
     ccggcattag tcgtgccaaa gaaagaactt gtaacgggag agaagagata caggttagtg      5400
     attgactaca gggcactaaa tgaggtcact atagcggacc cttatttact tccaaatatt      5460
     aacgaaattt tagatctcat aggaaacaag aaatatttcg atgttttaga cttaaaatca      5520
     ggatttcatc aagtaaaaat gagaccttca gatatagaaa aaactgcgtt tagtgtacag      5580
     ccattgggaa gatttgaatt tcttgtttta ccgttcggtc tcaagaactc tgctaggaca      5640
     tttcagcgag tgataaatac agtcctagcc gaatacatta ataaaatatg ctacaattat      5700
     attgacgaca ttattatttt tggagattca acggaagaat tggatgaaag atttaattta      5760
     atagcagaag cattaatagc aggcaggatt aaaattagaa ccagaaaaat gtgaatttgg      5820
     taaaacagaa gtttgttttt tagggcatat aattagcgaa gctgggataa ggccggatga      5880
     gaagaaaata gaggccgtca aaaaktttcc tatacctaaa aatgtaaaag gagtgagaca      5940
     atttttagga tttgctaatt attatagaag atttataaaa aatcttgctg atattacaaa      6000
     accattaaca atattattac aaaaagatag accatttatt tggaaagaag aacaacaaaa      6060
     agcttttgat aaactggtaa agatgttatg ttctgcacca gtcttacaat acccgcaatt      6120
     tgacaaacca tttataataa caagcgacgc aagtcaatat gctctaggat gtgtcatttc      6180
     tcaaggcgaa ataggcaaag acagacctat agcttatgca tctagagtat tgcaaccagc      6240
     tgaaatgaaa tatgcgacgt atgagaaaga ggctttggcg attatgtatg ccataaaaac      6300
     tttcaaaagt tatatctatg gtaataaatt tgtgattgta acggatcaca agccattggt      6360
     atggttaaaa tcagcagata ataatgaaag agtacaaaga tggagattaa aattactaga      6420
     ctatgaatat gaaatcatat ataaggctgg aaagcaaaat acgaatgcag atgccttgtc      6480
     acgaaatcca gtggcagaag ctggaatatg tgttataact agagcgcaga aaaagcgaga      6540
     agagaataaa attcgccaag aattgaccaa cgaagataaa attaaaatcg taaatgaaca      6600
     aaagacgaaa atcaataaga aaaagttgaa gataaaaaat cgtaaacgaa gaaaaattaa      6660
     aggcccaaag aatagaattg cgtgtgacgt cgagaagcaa gagagcaaac agaaaaatgt      6720
     agtatactcc aaaaacgcaa ttcaattccg aaaagataat gtaatacatt taattaataa      6780
     taatggtgaa tcactagatg aaaatacagc gaatttatta aaaaatattt attgggataa      6840
     aagtctagat agtaatgaaa ttgagataat aaacaaggga aataacaaaa tttttgtatt      6900
     atgtttaaat acagcggaat cagcaataac ggttaaaaca aatctgatta atttatttaa      6960
     attattaaga actatatgtt tgcaaaagaa ttatgcaata tttagtatat cgaaagatat      7020
     aaaaataaca aatataagtt gggatgaaat cgaagaaatc ttaaaagata ttttcaacga      7080
     gacaaatatt aaggttataa tttgtttaaa taatataatt tatatagaca tagataaaag      7140
     agataaaata tttgaaatgt tacacgcgac taaaataggg ggacactctg gcgttaatag      7200
     aacgtataat agaattaagg ataaatatta ttgggaaaat ttaaaagtag acattcagaa      7260
     aaggatacaa agatgcgagg aatgtcaaag aaataagctg aaaagaataa aaactaaaca      7320
     acctatgatt atcactgata cgccattaaa aacattcgat aaaatttcta tggacatagt      7380
     tggaccggta aatgtaacta aaaataacaa taaatatatt ttatctatac aagatcaatt      7440
     aacaaaattt atagtaattg tatctttgcc tgatcaaacg gcggaatcag tagcagatgc      7500
     tctaataaaa aaattcatat gcattttcgg atcacctaaa cttgtactca cggatagagg      7560
     agcaaatttt acaagcaaat taataaaaca aatagctcga agatttaaat ttaagaaagt      7620
     agaaaccacg gcattttcac ctcagtctaa cggctcgtta gaaagagcac atctccgcta      7680
     tacgaatatc taaagaactt ttcttcaaag aaaatggagt gggacgaatt acttgaattc      7740
     gctcaattta attataatac tagtgtccat actagtcata aatttacacc gcatgaacta      7800
     gtttttggtt atccagctaa acttccatct agtgaaccat taaagaaaaa cgaacaattg      7860
     cttactttta atggttattt agaaaattta gtagcgaaat tagaagaaat tacagtgatt      7920
     gctagagaaa atttgatcaa tatcaaaaat gaaatcaaaa gaatattatg atcggtacgt      7980
     aaatccaata gaactaaaaa ttggcgaaaa agtatggcta atcaaagaac caaaaccagg      8040
     taaattcgaa aagaatcata acctggggcc atatgaaata ataaaagtaa atgaaaatag      8100
     taacgtaact ataaattaca atgggaaacc aaaaacagtt catgtaaata aattaagccg      8160
     ttgccataca tgattctaaa atatttttct ttctaggaaa cttggacaca atgattcctg      8220
     aaattatttt aatttttgca attcttaaaa caagtcaagc tatagtagga ttcgattgcg      8280
     gggcatctga tccaatcatc accacgtact ctctacttga ttcggggagt gcgatttcca      8340
     tcaagaagat gtaaacgcga ccaacgccac catacaacta ctacaactgg cagaatttag      8400
     aaaagtaaga gtaatcaatg taaaatagaa attaagcgta cggtatatca ttgcggaatg      8460
     tttagtcata taggtgcggt agaacaaggc gtacaagaat atatttatga tataagctat      8520
     gaaaattgca aatcaatcca tgaaacagga atattcaaat atgacaattt tcacactata      8580
     gctaatttga aagtaaactc aaccaaatca acaggaattg aattggcggg aagtattaaa      8640
     gaaaagaaat gcacaggtgc agcatattcg gatagttttg gttcatggag tgatgtttta      8700
     gtacagggac ttataaaaat aacactttta gaagaatagt gctgcagata ggtaagttta      8760
     gataatgata aaataagatt aagttcaggg acagtatgta aattctcgga gcagcattgt      8820
     attgatatac aagctagcca tacattttgg tcagtaataa atactgatag ttgttttaaa      8880
     aataagtatg atatattata tggargagta tcgacaaaaa ataatctcac aaaatcacga      8940
     gacagtttat acaataagta ctaatgaaat atcgttcgcg ttaactatta gagaaaagat      9000
     aaatatttgc ggtagagatt ttatataaaa cagaacatcc gaaattrttc atttgcgaag      9060
     aaattgataa tcaattatta tttcaagaag atatgcttaa caaaaggccg atagttaatt      9120
     ttgatctttt tacatatgta aactcaaaat ttgtatacgt agaaaaacat tttaggggtc      9180
     agtttaaaaa tttatactta aatatgctaa aagaagaatg tgaattagaa agaaaagtga      9240
     ttcagaattc cctatctctc gcatccgttt cacccgatga atttgcctac aatataatgc      9300
     aaaaacctgg gtatattgcc agactagcag gtgaggctat acacataatt aagtgtacgc      9360
     cagtagaagt aaaaattcag catactgact attgctatac acaactgaca gtctcatcag      9420
     gaaacaaaac aatgtttctc acgccaaaaa cccatatact gttaaagaaa ggtacacaga      9480
     taaactgcaa ctctatcgta cctcaatatt ttaaaattgg cgataactgg ataaatctca      9540
     tgcctgcgcc aagaaaaagt aataacatca tcaagacttt gaaaccgtca accaaaattg      9600
     catggcagcc ggaaaaattg aattcactgg caaccagcgg aatatattca caagaagatc      9660
     ttcagaaact acagcaacac ataatgtttc cgatggaaag agcatcctta ctcaacacga      9720
     tagccagagg aatgcaaggt gaagaaacag ttcaaggagg cctaatatcc aacctattaa      9780
     ccgaaaatac attgatgaac atcgctgaaa gcacatggaa tcgatttatg gacaaactgg      9840
     tcagatttgg atcaatcagc tcagcaataa taatgatatt cattattatc catatctcca      9900
     aattggcaat cgatattata atacgaggat atacattaca tgcaatgtac ggatggacgc      9960
     ttcatctact tggagctata ttcagctcta ttacacattt actaatcgta atgagaagaa     10020
     acgatataat agtaaacgac gataataaac agacaccaac gacaaatcct caagatatcc     10080
     agctacaaga aatagtggtg caaaatccaa ttagtccgaa gaaagaaata tccccaccta     10140
     ttcctataca tccacctaat tcaaagacct atataaatca accaatagaa tcaaaagttg     10200
     aatcaaaagt agaatctaaa ccagaatcga aaatatcatt attctcgttg aagccatttt     10260
     agaatgtgta gctgtaaata ttcaaaccct ttactgttat tctacgtaaa caatatgata     10320
     ttaatgtttg atatatttat attgctaggg tcgtaggtaa taaattagtg tataatataa     10380
     acttcattta taatttgaaa caaactaaaa ttaattttaa tttaggttag atgtaaccac     10440
     taagagtagt agatttaata ataagaatgt aaataaaatt ctagagtatt catataagtt     10500
     tacaataaat cagacaataa taataataat aatacaagta aaaacaacta cttcaaaatt     10560
     tagttagaat attctagaat tttatgaaga ttaaagaatg ttgctgagaa cttaataatt     10620
     caaattgttt gttgatctgt tatctaatta agttgctatt gtaccaatag gcaaccagct     10680
     tgttgggggg a                                                          10691
//
ID   Gypsy-20-LTR_NVi repbase;    DNA;    INV; 403 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-403
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 778-778 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 403 BP; 138 A; 82 C; 71 G; 109 T; 3 other;
     tgttacgtcc tgcgacgtat tgcagttaag caatattgcg aagccgaaag cwcaaaattg        60
     atgagtcaga ataataagta gatcagcgaa gttaatgagt ataccctgta tacgccgcgc       120
     gatcagttgt aattatacac tcaatctgga ctctttgtac gacgctccta tccgtcgcta       180
     ccamagagct accagtactt aagtcgcgat atcgatctaa cattataaag aactttatct       240
     traataaatc gtgaaaatca gtcaattaca agtgtttttt attcgaatac acccatcctg       300
     tataagcctg actacagcac agcagcagcg attcagccca agcagttaaa cgcaagtaag       360
     taaaaataaa taattaataa tagatcggat ttgtgactta aca                         403
//
ID   Gypsy-200_AA-I repbase;    DNA;    INV; 4955 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   12-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-200_AA_;
KW   Gypsy-200_AA-LTR; Gypsy-200_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4955
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-4955
RA   Bao W.;
RT   "Sequence updated to consensus.";
RL   Direct Submission to Repbase Update (12-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   [3]: sequence updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           728..4798
FT                 /product="Gypsy-200_AA-I_1p"
FT                 /translation="MPSFGTLDHYVKGTSFTNYMERLEHLSSFNNWTEENK
FT                 KSVLIALTGPVVYDELKLIFPTVELATLNYADMVKKLKERFDKVDPDMMQR
FT                 FYFYNRFQKADESAESFILSVKLQAELCNFQQFKETAIRDRLIMGLHDREL
FT                 QKSLLMSETLTLDAIEKKLLSSEVANRQTKAMCSDTRRDEVHSVKSRLGQK
FT                 VGESSRDYGRDRLDRSYRGRNVNRYDRRVSFRGRSPSEARNRGAYANAICN
FT                 YCKKRGHLRRDCYSLKNRNSVHHVEKGEKDTSYDFKRSGGHDNSDEETDGM
FT                 ECLMISAVNKLNEPCMIEAKVQNCWLKMEIDSGSAVSVISEADCRKFFKAI
FT                 PMRNTNRQLIVVDGARLRILGEISVQVELNGLIAQLKLVVLKCNNSFVPLI
FT                 GRSWLDCFFPGWRSGFTNTTLVNNLNEQKGIDDIVDSMKQKYKKIFDKDFS
FT                 EPIVGYEGELILKNEQPIFKKAYTVPYKLKDKLAEHLEMLEQQKVITPIKA
FT                 SEWASPVIVVVKKDQDIRLVIDCKASINKAIVPNTYPLPLAQDIFASLAGC
FT                 RVFCCLDLAGAYTQVPLSKRSKKFTVINTMKGLFTYNRLPQGASSSAAIFQ
FT                 QIMDQVLHGLEGVSVYLDDVLIAAETFEKCVEILDSVLERLSXANIKVNFK
FT                 KCKFFVSQLPYLGHLITDKGLSPSPEKVSTISQAKAPTNVTELRAFLGLIN
FT                 FYNKFVPNLSSKLRSLYALLANDAIFEWTNDCEEAFQFSKEALLKADLLEF
FT                 YDPKKPLIVVSDASSYGLGGVLAHEINGLEKPICFTSFSLNSAQKRYPILH
FT                 LEALALVCTVKKFHKFLFGQKFKVYTDHKPLVGIFGKSGNNSLYVTRLQRY
FT                 TMELSIYDFEIAYRASTNMGNADFCSRFPLEQYIPKSLDIGNINSLNFSDV
FT                 FPLDYNLIARETEKDSCLAEVLQFVESEWPDNVQRSLKDLYSIRTDLEVVQ
FT                 KCLLYQDRVIIPAVLQADVLKLLHANHIGIVKMKQLARQKVFWSGINLDIE
FT                 NFVKRCEACIKMGTVPAKPPHSNWIPTSRPFSRLHADFFYFERKTFLLIVD
FT                 SHSKWVEVEVMLHGTEAKRVINSLITVFARYGLPDVMVTDGGPPFNSKEFV
FT                 AFLEKHGVRVMKSPPYNPSSNGQAERLVRVVKDVFKKYLLDPQLRDLDLTS
FT                 KINXFLINYRNQIASKEGVPPSHKVLSYKPKILLDLINPKKGYKQFLKEPV
FT                 PVDIPVITPPKPDPFDKLVEGDIIYYKNYKKTDPQRWIEARFVKQLSKNTF
FT                 QISLHRTTIMAHKNQLKLTHTPVRGSKLLLPEMNRKRGRAESDEYQGCAGS
FT                 DAEEEPFLGFPDVLSEPIPKRARRQKTSGSLMMTRSRAREMKDKV"
XX
SQ   Sequence 4955 BP; 1532 A; 883 C; 1136 G; 1396 T; 8 other;
     gctggcgacg aggaaaaaca gtgatattgt gcctcatacg gaataactcc tgtagcaagg        60
     aaattccaga gtgagccgtg taagtagaag gcagagtttt tgcagagggt ggtaagctct       120
     agaaaacttg tgcgaagaca gtgtgcttgt gtcagttttg aagaggtcaa aacgccttgt       180
     tcaagtcaga gccattgttg aggaacaaaa catttagcgc ttcgttcggc gtgtaaattc       240
     atgtgtctca agcatttgta atagcgtatt tatattgtga aaccaaaaat ttcattttgt       300
     gcaacttttc accattttat ttctccatta ttcacagtac tccaccccgc tcccaccgat       360
     ttggtcattt ttgttctacc gcggaaccat tgtttgcctc agcatcagca awmagaaagt       420
     cggcgtgcca cccattctac cgacccactc actaacgacg agcaagagtg gtgagcgtgt       480
     gagcgatcgt gtggtagagc actttgcgag agagagggag tactgtcgcw ttgggagaac       540
     ttgtcactgt gctgactggt gagagttctc tggttgtgag cggttgtgag tagtgagaag       600
     actcaactga ctgtgtctca tacagacgta aacaacagtg tkatcaacag ttgcaccagt       660
     ggtgagaaaa agtgcatcaa gtaagtggat ttttttttct atttctgctg attgttgcta       720
     ttgcaccatg ccttcgtttg gaacgttaga ccattatgtg aagggtacgt ccttcacaaa       780
     ttatatggaa cgtttggagc atcttagttc tttcaataat tggacggaag aaaacaagaa       840
     atcggtgctg attgctctaa ccggcccggt tgtgtatgat gagctgaaac ttatatttcc       900
     cactgttgaa ttagcaacat tgaattacgc tgatatggtg aaaaagttga aggaaaggtt       960
     cgacaaggta gatcccgaca tgatgcaacg gttctatttt tataatcgtt ttcaaaaagc      1020
     agatgaatca gctgaaagtt tcattttgtc ggtgaagctt caggcagaat tgtgcaattt      1080
     tcagcagttt aaggaaactg caatcaggga tcgtttgata atgggacttc atgatcggga      1140
     gctgcaaaag tctttgctaa tgtcggagac actgacactg gacgcaatag aaaagaaatt      1200
     gcttagcagt gaggtagcca acagacaaac taaagcgatg tgtagcgata caagaagaga      1260
     tgaagtgcat tcagtgaaga gtagattagg tcaaaaggtt ggtgaaagta gtcgagacta      1320
     tggacgtgac agattagaca ggtcatacag aggcaggaac gtgaatcggt acgataggcg      1380
     tgttagcttt cgtggtagat caccgtctga agctagaaat cgtggtgcat atgctaatgc      1440
     gatatgtaat tactgcaaaa aacgaggtca tttgagaaga gactgttata gcttgaaaaa      1500
     tcgaaactca gtgcatcatg ttgagaaggg tgaaaaagac acgagctacg atttcaagcg      1560
     gtcaggtgga catgataatt cagacgaaga aacagatgga atggagtgtt taatgatttc      1620
     tgcggttaac aaactgaatg aaccatgcat gattgaagca aaggtgcaaa actgttggct      1680
     gaaaatggaa attgattcag ggtcagctgt ttctgtgatc agtgaggccg attgtaggaa      1740
     atttttcaag gcaattccga tgcgtaacac caatagacag cttattgttg ttgatggtgc      1800
     gcggctgagg attttaggcg aaatttctgt gcaagtagag ttgaatggct tgatwgcaca      1860
     actaaagtta gtagtgctta aatgcaacaa cagttttgtt cctttgattg gaagatcatg      1920
     gcttgactgt ttcttccctg gatggcgatc tggatttacg aatactactt tggtgaataa      1980
     tctgaatgag cagaaaggta ttgacgacat tgttgacagt atgaaacaaa agtacaagaa      2040
     aatttttgat aaagattttt cagaacctat cgtaggctat gagggggaac tgatcctgaa      2100
     aaacgagcag cccattttca agaaggcgta tacggtaccc tacaagctaa aggataaact      2160
     agcggaacat ttggaaatgc tggagcagca gaaggtaatc acacccataa aggctagtga      2220
     gtgggcatcg cctgtgatag tggtagttaa aaaagatcaa gatatacgat tggtaataga      2280
     ttgcaaagca tcaatcaata aagcaatagt tccaaatact tatccactac cactagcaca      2340
     ggacattttt gcatcactag caggctgtag ggtattctgt tgtcttgatt tagcgggggc      2400
     gtacacgcag gttcctctgt ctaagcggtc caaaaagttc actgtaatca acaccatgaa      2460
     aggattattc acctacaacc gacttccgca aggagcttca agttctgcgg caatttttca      2520
     acaaattatg gaccaggtcc tacatgggct agagggtgtt agtgtatact tagatgatgt      2580
     ccttattgca gctgaaacat ttgaaaaatg tgttgaaata ttggattcgg ttcttgaacg      2640
     actttcaaak gctaatatta aagtaaactt caagaagtgc aagttttttg tttcacaatt      2700
     gccttattta ggacatctca twactgacaa gggactatcg ccatctcctg aaaaagtttc      2760
     gacgataagt caagctaaag cgccgacaaa cgtaacagaa cttagagcat ttcttggttt      2820
     gattaatttt tacaataagt tcgttcccaa tctgtcttcc aaactaagga gtttgtacgc      2880
     tctgctagca aacgatgcaa tttttgaatg gacaaatgat tgtgaagaag ctttccagtt      2940
     cagcaaggaa gctctgttga aggctgattt gctggaattc tacgatccta agaaacctct      3000
     aatagttgtc tcggatgcta gttcatacgg attgggtggt gttctagccc atgaaatcaa      3060
     tggattagaa aaacccatat gttttacatc gttttcgctg aattctgcac aaaaacgata      3120
     cccaatcctt catttagaag cattggcgtt agtttgtacc gtgaagaaat tccacaaatt      3180
     tctttttggc cagaagttta aggtttatac tgaccacaaa cctttggtag gaattttcgg      3240
     caaatccggt aacaattcgt tatatgtaac tagactccag agatatacaa tggaattatc      3300
     catttatgat ttcgaaattg catacagagc atcaacaaac atgggaaacg ctgatttttg      3360
     ctcgcgtttt ccactggagc agtatattcc caagagtctt gatataggta atatcaatag      3420
     cttgaacttt tcggatgtgt ttccgttgga ttacaatttg attgctagag aaactgaaaa      3480
     agactcttgc ttggcagagg tgttgcaatt tgtagaaagt gagtggcctg ataatgttca      3540
     acgttcgctt aaggacttgt attcaattag aacggatctt gaggtggtcc agaagtgcct      3600
     tctctatcaa gacagagtta ttatacctgc agtcctacag gcagatgtcc ttaaactatt      3660
     acatgcgaac catatcggca tcgtaaagat gaagcagtta gcacgtcaaa aagttttttg      3720
     gtcaggtatt aatttggaca tcgaaaattt tgtaaaaaga tgtgaagcct gtatcaaaat      3780
     gggcacggta cctgccaaac ctcctcatag taattggata ccaacatcgc ggccttttag      3840
     taggttacat gcagacttct tctattttga acgtaaaaca tttctgctca tcgttgatag      3900
     tcactcaaag tgggtggagg tagaggtcat gttacatgga acagaagcaa aacgtgtgat      3960
     aaactctctc atcacagttt ttgccaggta tgggcttcct gatgtgatgg taacggatgg      4020
     aggtccgcct ttcaattcaa aggagtttgt agcgttctta gaaaaacatg gagtgagagt      4080
     aatgaaaagc cctccatata atccaagcag caacggccaa gctgaacgtt tagtcagggt      4140
     agtaaaagat gtgttcaaaa agtacctgtt ggatcctcag ttacgagatt tagatttaac      4200
     ttctaaaatc aattwttttc tcattaacta tcgcaatcaa attgctagca aagaaggagt      4260
     cccaccgtca cacaaagttt tatcgtacaa accaaaaata ctacttgatt tgataaatcc      4320
     aaaaaagggt tacaaacaat ttttaaaaga acctgttccc gtggacattc ctgtaataac      4380
     tcctcctaaa ccggatcctt ttgataaatt agtggaagga gatataattt actataaaaa      4440
     ttacaagaaa actgatcctc aacggtggat agaggcgaga tttgtgaaac aactttctaa      4500
     aaacaccttt caaatctccc tccacaggac gacgatcatg gctcacaaga atcaattgaa      4560
     gctgactcat actccggttc gaggatccaa gttgctactt ccggaaatga atcggaagcg      4620
     cgggcgcgcg gagtcagacg agtaccaagg ttgtgccgga tccgatgccg aggaagaacc      4680
     attcctaggg tttccggacg tattgagtga accgattcct aagagagcaa gacgtcagaa      4740
     aacgagcggt agcctgatga tgaccaggag tcgcgctcga gaaatgaaag ataaagtttg      4800
     accggtctgg ttttgaggaa aaatttgcgc gtagtgcatt cgatttaaat taatgaattt      4860
     tattgaaata cgatctgaat tgtactattt aaacctaagt tcaaattata ttttaagaag      4920
     aattagatat agcaaggttc ttgagaagga aggac                                 4955
//
ID   Gypsy-200_AA-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   12-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-200_AA_;
KW   Gypsy-200_AA-LTR; Gypsy-200_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-234
RA   Bao W.;
RT   "Sequence updated to consensus.";
RL   Direct Submission to Repbase Update (12-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
SQ   Sequence 234 BP; 80 A; 50 C; 45 G; 59 T; 0 other;
     tgtagcgtac cgcgtacaaa tctaatctag cgcgttcggt aaaatgatcc aacccctgtc        60
     gttatacggc cgaaaagccg atcgattttt gagtaggcta agaacgaatc gaaaatatat       120
     ccagcagcag aagattctgt gatctggtag aaaccacacg tagtttcgtt ttccctttat       180
     atcccgaaag tttaaactaa gagtgaatct acaaacacca agtgaaacat aaaa             234
//
ID   Gypsy-201_AA-I repbase;    DNA;    INV; 4577 BP.
XX
AC   supercont1.64;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-201_AA_;
KW   Gypsy-201_AA-LTR; Gypsy-201_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4577
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.64; Positions 1545624 1541048.
XX
CC   'GAGGA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           151..4437
FT                 /product="Gypsy-201_AA-I_1p"
FT                 /translation="MASMELRLPNPLDCTNLADEWPKWKQTFLIYMIANKR
FT                 DGDSEQSKIATFLWLIGQRGVEIFNTLFPNDGSFDGMFGVGGAQAIGGVGA
FT                 VAGEAGAVADGVGVAAGGGRTLGDVIKAFDDYCLSRRNVAMEAFKFNMITQ
FT                 KEKQSFGNFETELRTQLQYCEFECTNCHTSYADRLLRDRIIVGVQDKKLQL
FT                 KLLDGKDDPLAKVVEVCKVFEAAAANKQLLDRKCLNAEIKSVVEQTQETGG
FT                 CTKEFPEVAVVKRSCYNCGQAFNGQHFRHCPAVNIRCNKCGKIGHFQKFCK
FT                 TGGTDFSKGRSSKPDDKKKSAMKMVKSIDWRDSGKSLTCVEQGDSAELTVE
FT                 PNICHYRGSLNDHVIGRVRWGKTFLIQNYPISFKLDTGSDINCLPLNIIQK
FT                 LKIELSKFKQYRVLDYSSNEIKIHGQVRLKCVDKDGGTNHVISFMVVDNNF
FT                 EPLLGLESCVTLGLLKRTYSVSATSVLPSDANAFLSMFRTLFEGLGKCPGT
FT                 CSIVLKEGSVPSLYYKKRIPLSLQDRLKTQLNEMVAQGIISPVEYPTDWVN
FT                 NIQIVEKPNGSLRICLDPKPLNACIKREHFLIPKIEDIMSTLSNKKVFTVL
FT                 DLRNGFWQMELDSRSSDLTTFMTPFGRYKWNRVPFGINSAPEMFQKKMVQI
FT                 FGDIPGVEVYFDDLTVSGKDYEEHDRTLRLVLERAMKYNIRFNESKIQYRC
FT                 SEIKLMGHIISNGTIRPDDKYIRAITEMQTPTSKLEVMRLLGLFKYLAKFI
FT                 PNLSQRTTLMREVTRKDVVWQWTDAHNAELKGLLQVISTSPVLTIYDPAKP
FT                 VVVQTDSSKDGIGSVLLQDGKPVAYASRCLTKSETKWAQIEKELLAIVFAC
FT                 ERFHYFLYGRDFEVQSDHKPLATLINRDIDSVTVRLQRMFMFLLKYPGLSI
FT                 VYTPGKDMLVADCLSRAPLGDPVEDDLNLSGLIHSVTKRVCMSEENYRICV
FT                 EALRNDERYSRICKYVQEGWPSYHKLDDFSQRFHKVKNELHFEQDLLFKDH
FT                 RLVIPTELQRTMCNWLHAPHMGIEKTLARARVHVYWPGMTQDIIETVKDCP
FT                 TCEVLKRNNQKEPLVQDRKAEYPFQKVSVDIFEYGGNSYIALIDSYSGLLC
FT                 AELLKDKSASQVVKALDKIFCRYGYPTEIRCDNVPFNSEECDKYADECNFR
FT                 FVFSSPRYPQSNGLAEKGVAIAKNLLKRCLEVGELPMFQYRLLEYNNTPIA
FT                 SMKMSPADIFFGRLLKTKLPVDAKLLHAGQINKPLVDDQIDKKRYNQKKYY
FT                 DHHAKPLPVLNEGERVMFKKNGKEWHYGKVVRKVNERSYIVVDNFDNHFRR
FT                 NRRFISKTNNNVVNTSDMLFEESLSKNNHNNSNVKSAITRETLQATDNNEQ
FT                 TLVSAESQEFVTNSSYYDTASEGGNTDEENERTNENAGQDLQQSSETRTRS
FT                 GRIVKPPKMYGEWTC"
XX
SQ   Sequence 4577 BP; 1404 A; 807 C; 1077 G; 1289 T; 0 other;
     tggtgtcgga agtgggattt tcttcccagt cgtcggaatt cgaaagtatc gtttccggtt        60
     aagtttgtcg tcgtggaaga ttgttaatat cgatgttatc gacggaaata taaattggag       120
     aaaaaaggga attcaacgga gcaaatcaac atggcgtcga tggagctgcg tttgcctaac       180
     ccgttagact gtactaattt ggctgatgag tggccgaaat ggaagcaaac ctttctgatc       240
     tacatgatcg ctaacaaaag agacggtgat tcggagcaaa gtaaaatcgc cacattcctg       300
     tggttgattg ggcaacgtgg agttgaaata ttcaatacgc tgttcccaaa cgatggaagc       360
     tttgatggaa tgtttggcgt aggaggtgca caagctatcg gtggagtcgg tgctgttgcg       420
     ggtgaagctg gtgctgttgc ggatggagtt ggtgttgctg ctggtggagg gcgaacattg       480
     ggtgatgtca tcaaagcctt tgatgattac tgcttgtcta ggagaaatgt cgcaatggaa       540
     gctttcaagt ttaacatgat cacccagaag gagaaacagt cgtttggaaa tttcgaaact       600
     gaactacgaa cccagttgca gtattgtgaa ttcgagtgca cgaactgtca tacgtcttac       660
     gcggatcggt tgttacgaga ccgaatcata gtgggcgtgc aggataagaa actgcaactt       720
     aagttactcg acggaaaaga cgatcctctg gcaaaggttg tcgaagtatg caaggtattc       780
     gaagctgctg ctgccaataa acagttgttg gatcgaaagt gtttgaatgc ggagataaag       840
     tcagtcgttg agcaaacaca ggaaacagga ggatgtacaa aagaatttcc ggaggtagca       900
     gtagtgaaac gtagttgcta taactgcggg caagcattca atggtcaaca ttttcgtcac       960
     tgcccagcag tgaacatcag atgcaataag tgcggcaaga ttggacactt ccagaaattc      1020
     tgcaaaacag gaggaactga tttttccaaa gggagatcat cgaagccgga tgacaagaag      1080
     aagtccgcaa tgaagatggt aaaatcaatt gattggcgtg actcaggtaa atcattaact      1140
     tgtgtagaac agggagacag cgctgaactt actgttgaac caaatatttg tcattacaga      1200
     ggaagtttga acgatcatgt gattgggcgc gtgaggtggg ggaaaacgtt tctcattcag      1260
     aattacccaa taagcttcaa gcttgacact ggatctgaca tcaactgttt gccgttaaac      1320
     attattcaaa aattaaaaat tgaattgtcc aaatttaagc agtatcgtgt attggattac      1380
     agctcaaacg aaatcaagat tcatggtcag gttcgtctaa aatgcgttga taaggatggt      1440
     ggtacaaatc atgtgatctc gttcatggtc gtcgataaca attttgagcc gttgttaggg      1500
     ttggagtctt gtgttactct tggcctttta aagcgaactt actcagtgag tgcaacgagt      1560
     gttttgccgt ctgatgcgaa tgcatttctt tctatgttta gaactctttt cgaaggtctt      1620
     ggcaagtgcc ccggtacatg ttctattgtt ttgaaggaag gttcggtccc gtcattatat      1680
     tacaagaaaa ggattcctct gagtttacag gatcggttga aaacacagtt gaatgaaatg      1740
     gttgctcaag gaattatttc tcccgttgaa tatcctacag actgggtcaa caatatccag      1800
     atcgttgaaa agccaaatgg ctcattgaga atttgtttgg accctaagcc gctaaatgcg      1860
     tgcatcaaaa gggaacattt cttgattcca aaaattgagg acattatgag tacgttgtca      1920
     aataagaaag tgtttactgt acttgatctg cgaaacggtt tttggcaaat ggagctggac      1980
     agtcggagct cagatttaac aacatttatg actcctttcg gtcgatataa atggaacaga      2040
     gtaccattcg gcattaatag cgcaccagaa atgttccaga aaaaaatggt gcagatattt      2100
     ggagacatac caggggtaga agtttatttt gatgatctta cggtttctgg aaaggattat      2160
     gaggagcatg atagaaccct tcgactggtc ttagaaagag caatgaagta taatattcgt      2220
     ttcaacgaga gtaaaattca atatcgatgc tcagagatta agttgatggg acacataatt      2280
     tccaatggta ctattcgtcc agatgacaaa tacattcgtg ctattaccga aatgcaaact      2340
     cctaccagca aactagaagt catgaggttg ttgggactgt tcaagtattt ggcaaagttt      2400
     attccaaatc tttcgcaaag aaccactttg atgcgcgaag tcacaagaaa ggatgtggtt      2460
     tggcagtgga cggacgccca caatgcggaa ctcaaaggat tgttgcaagt aatttcaacg      2520
     tctcctgtac tgacaatcta cgatccggcg aagcctgtag tggttcaaac ggacagctcc      2580
     aaagatggga ttggaagcgt cttgttgcaa gatggaaaac cagtcgctta cgcgtctcgt      2640
     tgtctaacaa aaagtgaaac caagtgggcg cagattgaaa aagaactgct agcaattgtt      2700
     tttgcttgtg aacgatttca ctactttctc tatggacgtg attttgaagt ccaatcggat      2760
     cataaaccgc ttgccactct gattaaccgt gacatagaca gtgttacagt tcgtctgcag      2820
     cgtatgttca tgtttttgct gaagtatcct ggtttgtcaa ttgtttatac tcctggtaaa      2880
     gatatgttgg ttgctgattg cctctctaga gctcctctag gtgatcccgt cgaagatgat      2940
     ttgaatttgt ccgggttgat tcattccgtc acaaaacgtg tatgtatgtc agaagagaat      3000
     tacaggatat gtgttgaggc acttcggaat gacgagcggt atagtcggat ttgtaaatac      3060
     gttcaagaag gttggccgtc atatcataaa cttgatgatt tttctcagcg tttccacaaa      3120
     gtaaagaatg aacttcactt tgaacaagac ctacttttta aagatcatcg tctagtgatt      3180
     ccgacagaac tccaacgtac aatgtgtaat tggttacatg ctcctcacat gggaatagag      3240
     aaaacactcg cacgtgcgcg agttcatgtt tattggcctg gtatgacaca ggatataatt      3300
     gaaacggtga aagattgccc aacgtgtgaa gttttgaagc gcaacaatca gaaagagccc      3360
     ctagttcagg atagaaaagc tgaatatcct ttccagaagg tgtcggtgga tatttttgaa      3420
     tatggtggta atagttatat tgccttgatc gattcttatt ccggtctgct atgcgctgaa      3480
     ttgttgaagg ataagtctgc aagccaggtg gttaaggctc ttgacaagat tttctgtcgc      3540
     tacggttatc ctactgaaat cagatgtgat aatgtcccgt tcaattctga agagtgcgat      3600
     aaatatgcag atgaatgtaa tttccgtttt gtattttcga gtccgaggta cccccaaagt      3660
     aatggtttgg ctgaaaaagg tgtggctatt gcgaaaaacc ttttgaaacg ttgtcttgaa      3720
     gtaggagagt tgcccatgtt tcagtacaga ctattggagt acaacaatac tcctatcgct      3780
     agtatgaaaa tgtctccagc agatattttt tttggtcgtt tgctgaaaac taaactgccc      3840
     gtggatgcaa aacttttgca tgctggtcaa atcaataaac ctttggtgga tgatcaaatt      3900
     gataaaaagc gttataacca aaagaagtat tatgaccatc atgcaaagcc tttgccagtt      3960
     ctgaatgagg gtgaaagagt gatgtttaag aaaaacggaa aagaatggca ctatggcaag      4020
     gttgttagaa aagtgaatga gaggtcgtac attgtggtag ataacttcga caatcatttc      4080
     cgaagaaatc gtcgttttat atcgaaaact aacaataatg tcgtcaatac aagtgacatg      4140
     ttgtttgaag aaagcctttc gaaaaacaat cataacaatt ctaatgttaa atcggctatt      4200
     acacgcgaaa ccttgcaagc tacagataat aatgaacaaa cactagtatc agcggaatcg      4260
     caagaatttg tcacgaactc atcatattat gatacggctt cagaaggagg taatacagat      4320
     gaagaaaatg aacgaactaa tgaaaatgcc ggtcaagact tacaacaatc atcggaaact      4380
     cgtacgcgaa gtggtcgtat tgtaaaacct ccaaaaatgt atggtgaatg gacgtgttaa      4440
     ctaacttgtt ttttccaaaa aaaccgacta actaaattaa acccaaatcc ttatcccttt      4500
     tatctgtttt aacctcgagt cagtcgcgag tgtacgactt cccaaccact aacaataagt      4560
     aaaaaaaaaa agaggcg                                                     4577
//
ID   Gypsy-201_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   supercont1.64;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-201_AA_;
KW   Gypsy-201_AA-I; Gypsy-201_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.64; Positions 1541047 1540858.
XX
SQ   Sequence 190 BP; 56 A; 33 C; 33 G; 68 T; 0 other;
     tgtaataata ttgatcatat ttaatcagaa ctgtcataac cacagggcat attccatagc        60
     tagctatagt taggttgagt ccgccagtct attatgatat tattgtctat catgaaataa       120
     agtcagttat catggctacc gtgcattaaa caccgcgttt tattctgctg gtttttcgag       180
     aattgttaca                                                              190
//
ID   Gypsy-202_AA-I repbase;    DNA;    INV; 4498 BP.
XX
AC   AAGE02024456;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-202_AA_;
KW   Gypsy-202_AA-LTR; Gypsy-202_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4498
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024456; Positions    8716    4219.
XX
CC   Positions [3449-3826] - Integrase core
CC   'GACAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1040..3445,3449..4393)
FT                 /product="Gypsy-202_AA-I_1p"
FT                 /translation="MSVSTTIEPYLPNSIPFAQYIEQLEYVFLNNNVPEER
FT                 YKTSFLAVCGVTVFSEIKKLFPGQDVKTLSYQQITEQLKKRFDKCDSEVIN
FT                 SYKFWSRRQGRNEKSEDFVIAVKVLAEQCGFGTFKDRAIRDLLVIGVYNRD
FT                 IQKRLCDEDDLSAARAEKLILNHEISNFRTSVLKDDDDKNTSIVARLGRKE
FT                 VRSRSKQRYRGRSKSGNRSVSFSPRHKQIRYGDRRYDSEKPTYSCSFCKKT
FT                 GHTRKFCYKLHGRGQRSADVKFLGSPKKSTSATTSGSGNFKRPVYTDDEDD
FT                 EDLPCMMISSINRINEACYVEVSVEKSVLTMEIDCGSAETVISEELFLRNF
FT                 KHIKLSPCNKKLAVIDGKRLKVLGKISVPVHLKGRRQQLCMIVLRCENDFM
FT                 PLMGRTWLDCFYEGWRNIFSNSGIQNENIHKIDEEHVVDELKSKFSSVFDG
FT                 DFSTPIVEYEGDLVLKDDKGLFRKAYGVPLRLRDKVIEHLDSLERDGVITP
FT                 IETSEWASPVVIVMKKDQSIRLVIDCKVSINKVIIPNTYPLPVAQDLFASL
FT                 SVVCAVKKFHKFLFGMKFVIYTDHKPLIGIFGKEGKNQISVTRLQRYVIEL
FT                 SIYDYEIIYRPSSKMANADFCSRFPLPQPVPKVLDREFVKSLNFTDQFPLD
FT                 CKEISKETTRDDFLVAIMTYLRQGWPDRLDRRFRDVYSHHQELEEVEGCVL
FT                 FQDRVIIPDVLKPQVLKMLHRNHNGISKMKQLARRTVYWFGMNKDVEEYVK
FT                 CCRACNQMTPVSKPAAYSSWIPTKQRFSRVHADFFHLDHKTFLVIVDSCTK
FT                 IELEYMKSSTDSNNVIKVFLNVFARYGLPDVLVTDGGPPFNSMNFVDFFEN
FT                 QGVKVMKSPPYHPESNGQAERMVRLVKDVFKKFLIDPEMKKLETDLQVSYF
FT                 LLNYRNTCQDDDGRFPSVRLLSYKPKTLLDLINPKSNFKHNLIIRHDDYSP
FT                 TVSTSTDNFNDQFVNLKCGDLIYYKNANKSDIRRWLPATYLKRISSNVFQI
FT                 SLGGRMITAHRRQIKISDVPKSTTGSRFVIRRENVQSNSRKRRREVDVEDD
FT                 ERISDQEPDFYGFSAESFIFREETPIGDQIDRQEINLASNQTRKSSRNAKK
FT                 KRKGDFVYY"
XX
SQ   Sequence 4498 BP; 1380 A; 748 C; 1002 G; 1368 T; 0 other;
     gctggcgacg aggagtaagt acggtaaaaa aaaagtgatt tttgtgacag tgaatcgttt        60
     tagtgataaa agtgtttcgc cctacattcc cagagtcaag taagtttttt tccctgggaa       120
     gagctaggag attttcggcg gacaaagcgt cattttgaag tgcatttttt atattgtttg       180
     tagtcctttt gttctttgct ttttgtttga ctttcaaaga ggtgcgaaat tacaaccgat       240
     aaaacaaaag tgatagtgaa agagttttta attgtgtcaa aaagcattgt tttgtgtttt       300
     caacgactat caatcattta aacaaacgaa ttgtggatat tttttaagag aaattgaatt       360
     ttccagcagc agtttttgct tgttttatct tatttttaat tttcaccatt ttgttttttt       420
     tttatctgtg tagctattcc gtctgacggg tcgttgcgag agtgagttcg tcgatttcac       480
     tgatcattta cgacggacga agttcactca ctaatccgtt gctacatgtg tgagtggtag       540
     gaaaacaaat cgagcagttg agttaccagt cgtaccgaac aaaccaccat acacactact       600
     acatagtagc aggcaacgac tcgggtagcg aggcagacag cgcggtgcag cattttgtac       660
     gtgaacgaga aaacggtgca tcctcaggtg cattgtttca tttgttttcg ggcaacacaa       720
     agaaaaggat cagctgtttc aaaaacatcg ttttgtgcga cgtctgtgat taagttccgt       780
     tggtgcctgc tagctgctgc tgttggaggc tgtttaatac ttggtgtaat accacaagcc       840
     ggtgtttgcg gcggtttttt tctcctgcat gctgtttgta tccgccacaa tattctccca       900
     aggtgaagta cttcggtgtc aaggtacgtg actttgtttt tgttcaatat tttggaagtt       960
     tttatattga tattttattg cgaacgcgca tgattgtagt ttgatatgtg cttttgtttt      1020
     gttttatttt caataaagaa tgtcggtgtc aacaaccatt gagccatatt tgccaaattc      1080
     aattccgttt gcgcaataca ttgagcagct tgaatatgta tttcttaata acaatgtgcc      1140
     tgaagaacga tacaagacat cctttttagc cgtgtgtggt gtaacggttt tttctgaaat      1200
     caaaaaactt tttcccggtc aagacgttaa aaccctatct tatcagcaga ttactgagca      1260
     actaaaaaag aggttcgaca aatgtgattc ggaggtgata aatagttaca agttttggag      1320
     tagaagacag ggaagaaatg agaagtctga ggattttgtg atcgcggtaa aggttctagc      1380
     cgaacaatgt gggtttggta cctttaaaga tagggcaatc cgagatcttc tagtgatagg      1440
     agtatacaac cgagatattc agaagcgctt gtgtgatgag gatgatttgt ctgctgcaag      1500
     agcggagaag ctcatactga atcatgagat ttccaatttt agaacaagtg ttttgaaaga      1560
     tgacgatgat aaaaatactt ccatagttgc tcgtttagga agaaaggagg tacgttctcg      1620
     ctcgaaacaa agatatcgtg gtaggagtaa gagcggtaat cgcagtgttt cattttcgcc      1680
     aaggcataag caaataagat atggggaccg gagatatgat tcagaaaaac cgacatattc      1740
     ctgctctttt tgcaaaaaga cgggccacac acggaagttt tgttataagc tgcatggtag      1800
     agggcagcgt tcagcagatg tcaagttcct aggatcgccg aagaaatcca ctagtgctac      1860
     cacaagtgga agtggaaatt ttaaaaggcc cgtttacact gatgacgaag acgatgagga      1920
     tttgccttgc atgatgattt cctcgatcaa tcgcataaat gaagcttgtt atgtggaggt      1980
     ttcggttgag aaaagtgttt tgacgatgga aattgactgc ggctcagcag agaccgttat      2040
     ttccgaagaa ctgtttctaa ggaactttaa acacatcaaa ctctcaccat gcaacaagaa      2100
     actggcagta attgatggca aaagattgaa agttttgggc aaaataagcg taccagttca      2160
     tctgaaaggt cgtaggcagc aactgtgcat gatagtgctt aggtgtgaaa acgatttcat      2220
     gccattgatg ggtcgcacct ggttggattg cttttatgaa ggatggcgaa acattttttc      2280
     gaactcagga attcagaacg aaaacattca caagattgat gaggaacatg tggttgatga      2340
     gttgaaaagt aagttttcat cagtttttga tggggatttt tcaactccaa tagttgagta      2400
     tgaaggagat cttgttttga aagacgataa aggccttttt agaaaagcat atggagtacc      2460
     gcttagattg cgggacaaag tcattgagca tttagattct ttggagagag atggggttat      2520
     tacaccgata gaaaccagtg aatgggcttc accggtagta atagtgatga aaaaggatca      2580
     aagcatccgt ttagtgatcg attgcaaagt ttcaataaat aaagtgataa ttcctaacac      2640
     ttacccatta cctgttgcac aggacctttt tgcctctcta tcggttgttt gtgcagttaa      2700
     gaaatttcat aaatttctgt ttggaatgaa gtttgtaatt tacactgatc acaaaccttt      2760
     aattggaata tttggtaagg aagggaagaa tcaaatttcg gtaacaaggc tgcaaagata      2820
     tgtcattgaa ctttctattt acgattatga aatcatatac cggccttctt ccaaaatggc      2880
     aaatgcggat ttttgctctc gttttcccct ccctcagcct gttcctaaag ttctagatcg      2940
     tgagtttgtg aagagtttaa attttaccga ccaatttcct ctggattgta aagaaatatc      3000
     aaaagaaaca actcgagatg attttttggt ggcaatcatg acttatctca gacaagggtg      3060
     gccggatcga cttgacagaa gattcagaga tgtttattca caccaccagg aacttgaaga      3120
     agtagaagga tgtgtgttgt ttcaggatcg agtgattatt ccagacgttc taaaaccaca      3180
     ggttttgaag atgctgcata gaaaccataa cggtataagc aaaatgaaac aattggctcg      3240
     aagaacggtg tactggttcg gtatgaacaa ggatgtggaa gaatacgtca aatgctgtag      3300
     agcatgcaat cagatgacac ccgtttcaaa accagcagcc tattcttcat ggattccaac      3360
     taaacagcgg ttcagcagag tacacgcaga cttctttcac ttggatcaca aaacattcct      3420
     ggttatagtg gacagttgca cgaagtagat cgagctggaa tacatgaaat ctagcacgga      3480
     cagtaataat gttatcaagg tttttctcaa tgtatttgcc agatatggtt taccggatgt      3540
     tctggtaacg gacggagggc caccgttcaa ctcaatgaat ttcgttgatt tttttgaaaa      3600
     tcagggggtg aaagtaatga aaagcccgcc ttatcacccc gaaagcaacg ggcaggccga      3660
     acgtatggtt cgattagtaa aggatgtttt taaaaaattt ctcattgatc cagaaatgaa      3720
     aaaacttgaa acggatttac aggtttccta cttcctttta aattatagaa atacctgtca      3780
     agatgatgat ggacgatttc catctgtaag actcctttca tataaaccca agacgctatt      3840
     ggatttgatt aatcccaaat ctaattttaa acacaattta ataataaggc atgatgacta      3900
     ttcacctact gtctctacaa gtaccgacaa tttcaacgac cagttcgtta atcttaagtg      3960
     cggtgacctg atatattaca aaaatgctaa caaaagtgac attaggcgat ggttacctgc      4020
     aacgtatctt aaacgaattt cttcgaatgt ttttcagata tcacttggag gcaggatgat      4080
     tacggcacac agacgacaga ttaaaatttc cgacgttcct aaaagtacaa ctggctcacg      4140
     ttttgtgatt cgcagagaga atgtgcagag taattctaga aagagaagga gagaggttga      4200
     cgtcgaagat gacgaaagaa tttcagatca ggagccggat ttttatggct tctcagcgga      4260
     atcgtttatt tttagagaag aaactccgat cggagatcaa atagataggc aagagattaa      4320
     tttagcgtcg aaccaaacaa gaaaatctag tagaaatgct aagaaaaaac gtaaaggaga      4380
     ttttgtatac tattgatttt tattctgaat tttaaatcgt tcaatattat agtcaaagtt      4440
     ttgatttcga attctattag attttgaatt agttttcatt cttaatggaa ggaggagt        4498
//
ID   Gypsy-202_AA-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   AAGE02024456;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-202_AA_;
KW   Gypsy-202_AA-I; Gypsy-202_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-240
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024456; Positions    4218    3979.
XX
SQ   Sequence 240 BP; 79 A; 43 C; 43 G; 75 T; 0 other;
     tgttgtgtta gtgcatatac gaaagagagc ttatcgttta agagagaaaa aggaatataa        60
     atgctgtgct atgaaacaga acagaaatac aagatcagaa gttatctgta cgcaagctga       120
     accagacgtg tttcctgaaa ccttttaatt acagtatcac cgaaactcta tttaagtctt       180
     cctcttaaaa cgtatacttt ttggttccac ctcgattcag tccgctttgt agttattaca       240
//
ID   Gypsy-203_AA-I repbase;    DNA;    INV; 4143 BP.
XX
AC   supercont1.83;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-203_AA_;
KW   Gypsy-203_AA-LTR; Gypsy-203_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4143
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.83; Positions 1403700 1399558.
XX
CC   Positions [1633-2082] - Reverse transcriptase
CC   Positions [3166-3675] - Integrase core
CC   'CGCTC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..4122
FT                 /product="Gypsy-203_AA-I_1p"
FT                 /translation="MPDEENKVMSAASASIKPPKPLIIEENMAAKWKQWWR
FT                 QFKWYSVATELETKPPPIQAATFLSCIGDECIRVLDTFGLTDAQEADIKVL
FT                 KDKFEAYFVPKSCITYERYVFGKIVQNAGEQCDSFFTRVREQAKRCAFSVL
FT                 HDSMVKDKIIAGTIYTNLIPQLLNDDNDLQKTIDIVRNYEQSVKQTKVMLE
FT                 KSVLEVDAVRQKKYESNVQSDAPFPCNRCGLEHRRRMCPAFNKKCLKCGKK
FT                 GHFADRCFGGGASGGSSVSSGSMASGGSIKTGNNRYVKTVEVEEEEELSVE
FT                 ELYIAAVDDDDENSDEVWYETVSINGKSVTLKLDSGAACNVLPWNIFRKLG
FT                 KELQQSKTKRLISYSNHKVNVKGEAELPVVVRGRKETATFKVIEGDMMPIL
FT                 GRKTSVRFKLIARIDEVNMEKSLFNGLGCIKGFVYDIDLVENPMFRNESPR
FT                 RIPHALRSAVKAELDSMLQMGVIEPITEPTPVLNAMVIVRQKGKLRICIDP
FT                 SEVNKNLLRRVHPLSTVEEISARICGSKHFSILDMKKGFWQIPVSERTKKY
FT                 LAFGTPWGRYTCRRLPFGLASAPEIFQNLMSSLLEGIDGVESSMDDILIHA
FT                 PTEEKLNKITKLVLKRIEDAGLKLNKDKCIFNKPTVKFLGHLVTDVGLKAD
FT                 PEKLEVIQKLKRPTNKLQLQRILGTITYLGKFVENLSAITEPLRRLLVKDV
FT                 EWIWDHDQEEAFLKIKQIMMTPPVLAYYDVNSDVTLSVDASSKAFGAVLLQ
FT                 NDKPVAYASKSLTKAQENYPQIEKEAAAIRFACNRFHDYIYGKKIKIETDH
FT                 KPLESIFKKSIDRAPPRLKRIMLDVVQYAPEIMYKRGSDIPLPDILSRDMD
FT                 NLESRDPSDELEVHIILPMSKPARQEIVEECLRDPEIVKLTQVIMNGWPNE
FT                 KRLVPDVLRKYWSFRDEMAVYEGLVFRSHQILIPKSLRNKMLKEIHKGHTG
FT                 IQGCMRRAKQSLFWVGMTTEIAGMIEQCAVCEKHQRSNVKHELINNEIPTL
FT                 PFEIVSSDLFHFCGKEYLLIADSYSGFFDFAQLREPTARVVIEQLKRWFAT
FT                 HGIPRVLYTDNGPQYSANEFATFSRLWSFDHVTSSPHFPRSNGLAEKFVQT
FT                 AKNLLKRCAEDGSDVQLALLLIRNTPRDEKLQSPSQRLMNRTLRSTIPAAD
FT                 VVLKPRVINQVTENLTQKRLQQKKYADRSSVKPQEYHVGQAVMLRDEKSSF
FT                 WKGGRITEKLEQPRSYMVQIGDGKVVRRNVRDIRDMKARDSCFEVTGNEIQ
FT                 SAVNYHQDQREANPEDDEELGGTQQGRQSIVPLRPSTDSPIRTRCGRIIRS
FT                 NRNSEFEYY"
XX
SQ   Sequence 4143 BP; 1336 A; 764 C; 1037 G; 1006 T; 0 other;
     tggtgtcaga aaaagtgagt tatcgaaaat agttattgat tttcgtgacg aacaagtgaa        60
     aaaatgcaat tgcagtgtac agtaaagttg aatcgaatta attttcaaac tagctcaccg       120
     gaataagcct gaaaatagtg agcagtttcc acaacaagga tgccggatga ggaaaataag       180
     gttatgtcgg ccgcttcagc gtcgattaaa ccaccgaaac cactaatcat agaggagaac       240
     atggctgcca aatggaagca gtggtggcgg cagtttaagt ggtattcagt cgcaacagaa       300
     ctggaaacca aaccaccacc aatacaagcg gcgacgtttt tgagctgtat tggtgacgag       360
     tgtattcgtg ttttggacac tttcggactg acagatgccc aagaagcaga cattaaagtg       420
     ctaaaagaca aattcgaagc gtattttgtt ccgaaatcgt gcataacgta tgagcggtac       480
     gtcttcggta aaatagtgca gaatgcagga gaacaatgtg attcattttt tactcgagtt       540
     cgcgaacaag ccaagagatg tgcttttagt gttttacacg actccatggt caaggataaa       600
     atcatcgctg gcacgattta cacgaatctt attccgcaac tactcaatga tgacaacgac       660
     cttcagaaaa cgattgacat agtgcgaaat tatgaacaat cggtgaaaca aaccaaagtg       720
     atgctcgaga aatcggtttt ggaagtggac gccgtgcgtc agaagaagta cgagagcaat       780
     gtacaaagtg atgcaccttt tccatgcaac cgttgcggct tggagcatcg gcgaagaatg       840
     tgcccggcct tcaacaaaaa gtgcttgaag tgtgggaaga aggggcattt cgcggatcgg       900
     tgttttggtg gtggtgcttc gggaggcagt agtgtttcga gtggcagtat ggcgtccggt       960
     ggttcgatca aaacgggaaa taacagatac gtgaaaacag ttgaggttga agaagaagaa      1020
     gagctgtcgg tggaggagct gtatatagca gctgttgatg acgacgacga aaacagtgat      1080
     gaagtgtggt atgaaacggt atcaatcaac gggaagagtg taacactgaa actggacagt      1140
     ggagctgcgt gtaatgtgct accgtggaat atttttcgaa aactgggtaa agaattacaa      1200
     caatcgaaaa cgaaaaggct gatatcgtac tcaaatcata aagtgaatgt gaagggtgaa      1260
     gcagaacttc cagtagtagt gagagggcgc aaggaaactg cgacctttaa agtgatcgaa      1320
     ggtgatatga tgccaattct gggaagaaaa acaagtgtcc gtttcaaact aattgcgcgt      1380
     atcgatgaag tcaacatgga gaagtctctg ttcaatggac tggggtgcat caaaggattc      1440
     gtctacgaca tcgatcttgt ggaaaaccca atgttcagaa atgaatcacc cagacgaatt      1500
     ccacatgcac ttcgatcggc ggtgaaagca gaattggatt cgatgttgca gatgggagtt      1560
     atcgaaccaa ttacagagcc tacaccggtg ttaaacgcca tggtcatagt acggcagaaa      1620
     ggtaagctac gaatttgtat tgatccatcg gaagtaaata agaacctcct tcgccgagtg      1680
     catccgcttt caaccgtgga agaaatttca gcacgaattt gtggctccaa acatttttcg      1740
     atcttggata tgaagaaggg tttttggcaa atacccgtat cggagcgcac gaaaaaatat      1800
     ttggcttttg gcacaccgtg ggggagatac acttgtagaa gattaccatt cggtttagca      1860
     tcagcgccgg agatattcca aaacttgatg agttcactac tagaaggaat tgatggggtt      1920
     gaaagctcaa tggacgacat tctcatccat gcgccaacag aggaaaagtt gaacaagatt      1980
     accaaattgg tcttgaaacg aattgaagac gcagggctaa agctgaacaa agacaaatgt      2040
     atttttaaca aacctacagt aaaatttttg ggacatttag tcacggatgt agggttaaaa      2100
     gctgatcctg aaaagctgga agtcatccaa aaattgaagc ggccgacaaa taaattgcag      2160
     cttcaaagaa ttttgggtac aataacctac ctggggaaat ttgtcgaaaa cttgtcagct      2220
     ataaccgagc ccctaaggag attgttagta aaagatgtag aatggatttg ggatcatgac      2280
     caagaagaag cttttttgaa gattaaacaa atcatgatga caccaccggt tctagcgtat      2340
     tatgacgtca attctgatgt cacgctatcg gtagatgcca gctctaaggc attcggtgca      2400
     gtactgttgc aaaatgacaa gccagttgct tatgcgtcaa aatcgttgac aaaagcacaa      2460
     gaaaattatc cgcaaataga aaaggaggca gccgctattc gatttgcgtg taatagattt      2520
     cacgactata tctatggtaa aaagataaaa atcgagaccg accacaagcc attggaatcg      2580
     atattcaaaa aatcgattga tagagctcct cctaggctaa aacgtattat gctggatgta      2640
     gttcaatatg cacccgaaat aatgtacaaa aggggatctg atattcctct tccagatatc      2700
     cttagtagag atatggacaa tttggaatca agggatcctt cagatgagtt agaagtccac      2760
     atcatattgc caatgtcgaa gccagcgcga caagaaatag ttgaagaatg tttgagggac      2820
     ccagaaattg tcaaattgac acaagtcatc atgaatggct ggccgaatga aaagaggttg      2880
     gtcccagatg ttcttcggaa gtactggtct ttcagagatg aaatggcggt atatgaagga      2940
     ctagtatttc ggtcacatca aattttgatt ccaaagagtt tgaggaacaa gatgttgaag      3000
     gagattcata agggccacac cggaatccaa ggctgcatgc gtcgtgcgaa gcaatctttg      3060
     ttctgggttg gaatgaccac tgagatagca ggtatgatag agcaatgcgc cgtctgtgag      3120
     aagcatcaga gatccaacgt caaacatgaa ctgatcaata acgaaattcc gacgctgccg      3180
     tttgagatcg tgtcgtctga tttgtttcat ttttgtggca aagagtactt gctcatagct      3240
     gacagctatt caggattttt tgatttcgct cagctaaggg aaccaacagc gagagtagtc      3300
     atcgagcagc tgaaacgttg gtttgcaaca catggcattc caagagtgtt gtataccgat      3360
     aatgggccgc aatattcagc caatgagttt gccacgttta gccgactgtg gtcgttcgat      3420
     catgttactt ccagccccca tttccctagg agtaacggtc ttgcagaaaa atttgtgcaa      3480
     actgcaaaaa atttgcttaa gcgatgcgcg gaggatggtt cagacgtcca gttggctcta      3540
     cttttgatta gaaatactcc aagagatgaa aagttgcagt cgccgagtca aaggttgatg      3600
     aatcgtacat tgcgttctac cattccagca gcagatgtcg ttctcaagcc tcgagtaatc      3660
     aaccaagtta cggaaaatct gacgcagaaa aggctgcaac agaagaaata tgccgacaga      3720
     agttcagtca agcctcagga gtatcacgta ggacaagccg tcatgctgag agatgagaag      3780
     tcaagttttt ggaagggagg aagaataacg gagaaactag agcagccaag atcatacatg      3840
     gtacaaatcg gagatgggaa agtggttcga agaaacgtac gagacatcag agatatgaag      3900
     gcccgagata gttgcttcga ggtaaccgga aacgagatcc agtctgcggt gaactaccat      3960
     caagatcaac gtgaagcaaa tccagaggac gatgaagaac ttggcggaac acagcaaggt      4020
     cggcaatcga ttgtgccgtt acgcccatca acggacagtc ctattaggac aagatgtgga      4080
     agaatcattc gttccaatcg gaatagtgaa tttgaatact attgatttgc ttaaatgggg      4140
     aga                                                                    4143
//
ID   Gypsy-203_AA-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   supercont1.83;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-203_AA_;
KW   Gypsy-203_AA-I; Gypsy-203_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.83; Positions 1399557 1399366.
XX
SQ   Sequence 192 BP; 65 A; 50 C; 24 G; 53 T; 0 other;
     tgtgacgaag atgacttgta tttgttaaaa gtgtattcca taacacctgc atattggtaa        60
     accttgcttt tatacgttca tcattcacac acacacacac acacactcac acacactgat       120
     acacgacata gagagaaccc aataaatcat tctgtactga gactccgtcg actccattac       180
     tctaatatca ca                                                           192
//
ID   Gypsy-204_AA-I repbase;    DNA;    INV; 3615 BP.
XX
AC   AAGE02024741;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-204_AA_;
KW   Gypsy-204_AA-LTR; Gypsy-204_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3615
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024741; Positions    4929    8543.
XX
CC   Positions [2294-2803] - Integrase core
CC   'GAAC' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..3178
FT                 /product="Gypsy-204_AA-I_1p"
FT                 /translation="MTESGIIEEARSEWNSPVLLVPKKSCDDKKKWRMVID
FT                 YRKVNNTLQDDRFELGNIEDIIDSLAGAKYFTHLDLSQGYYQCEIDPKSRP
FT                 ITAFSTASGQFQMTRLPMGLKISPSTFSRLMTVAMSGLCMEKCLVYLDDII
FT                 VFGKTLEEHNKNLISIFERLRGVNLKLNPSKCNFLKQELLYLGHFISEEGV
FT                 RPDPSKIESIKNWPVPKTADEVKRFVAFANYYRKHIKDFSKICIPLNHLTR
FT                 KDVTFEWTPECQQTFEMLKNEFMNPPVLDYPDFENSFKLQTDASGYALGAV
FT                 LLNRKNGRPVGYASRALNKAELNYGTIEKELLAVVWAIKHFRPYLYGRKFD
FT                 LETDHRPLVYLFSMKEPSSRLTKFRLALEEYDFNITYIPGKDNVLADALSR
FT                 MSINDLREINKKVDQDVLITTRSKTVKENSDKNQDNEVTGQHSLSGLSIEI
FT                 IFNESNTIPEVKFNAPKHQIIIRPAKTLIQLRRIVVMLREICKSKNINELV
FT                 IKNTDPGKQFYNMVYTYNLNNGMPPFRIVDSKVKCIENKTEQQLIINDFHL
FT                 LPTAGHAGITKTLKNIQRRYFWSTMKKDITNFIKSCEACQKNKHIKPKNIP
FT                 QIVTTTASSAFSKIYLDLVGPLLPSNEGHAYILTTQCELTKYITATPIINK
FT                 TTEVVAKAFVENVILNYGVPDEIATDRGSEFMSELFTKICELLKISKLNST
FT                 AYHHQSIGALENSHKSLGNFLRIYASGTPGNWSSWIKFYQFAYNTTVHLET
FT                 DKSPFELVFGKICKLPSSLNNSETPNPIYNLDDYSKILKFKIQNTQKEVQK
FT                 RLVESKLERVKKLNCNARFMNYSPGQLLLVRNETGNKLSQIYEGPYPVVMD
FT                 KGTNVEVRIRDKIDIVHKNRVKPFITRNAASNTEN"
XX
SQ   Sequence 3615 BP; 1356 A; 560 C; 673 G; 1026 T; 0 other;
     tggcgatcct gccaggtatt tgtgtacccg ctaggacaga aataacatca tatatattgc        60
     gaacattaag gaatctcatg tgcttttgag cgaggaagta aaaccacacg tttttatagc       120
     caatgcgatt gtgcaaccta cgaatggtaa aattccgatt aaaattttga atgtctccag       180
     aaaaacagtc tttttaaatg ggctgaaacc aaaattggaa aaacttgaaa aatatgaaat       240
     actacaacta aatgatgtca aaggtgaacc gaatagggtg gaaaaattat tgaaagaatt       300
     aaagattgat catttgcctt ctaaagagag agcaactatt cgggaaattt gtataaaata       360
     taacgacata ttttgtttgg cagatgataa attaacggtt actaaaattt taacaccgac       420
     aattaccgtc aaagaaaaca cgcaaccggt gtatacgaaa ccatataggt tgccacaatc       480
     tcaaaaagac gagatagcga aacaaattaa aaacatgact gagagtggaa taatagagga       540
     agcccggtct gaatggaata gtccggtgct ccttgtgcct aagaagtcat gtgatgacaa       600
     aaagaagtgg agaatggtta ttgattaccg caaagtaaac aataccttac aagatgacag       660
     gtttgaatta ggaaatatcg aagacataat agactcttta gcaggggcca agtactttac       720
     gcacttggat ctctcgcaag ggtactatca atgtgagata gatcctaaga gcagaccaat       780
     cacagcattt tcgacagcct caggtcaatt ccaaatgact aggctaccga tgggattgaa       840
     aataagccca tcaacgtttt caagattaat gacagtcgcg atgtcgggac tgtgtatgga       900
     aaaatgtcta gtttatctag acgatataat agtgtttggc aaaaccttag aggaacacaa       960
     caaaaattta atttcgatct ttgagagact tagaggagtt aatcttaaat tgaatccctc      1020
     taaatgcaat tttttaaagc aagagttact ttatttagga cattttatat cggaagaagg      1080
     ggttcgacct gatccttcga agatagaaag tattaaaaat tggcctgttc ctaaaacggc      1140
     cgatgaagtt aaacgttttg ttgctttcgc aaattattat cgaaagcaca taaaagactt      1200
     ttcaaaaata tgtattccct tgaaccattt gacgaggaaa gatgtaacat ttgaatggac      1260
     acctgaatgc caacaaacct tcgaaatgtt gaaaaatgaa tttatgaatc caccagtttt      1320
     ggattatccg gattttgaaa attcatttaa attacaaact gacgcatcag gatatgcttt      1380
     aggagcggtg ctgttgaata ggaaaaacgg aagaccagta ggatatgcgt ctagagcatt      1440
     gaataaggca gaactgaatt atggaactat cgaaaaagaa ctattggctg tagtttgggc      1500
     gatcaaacat ttcagaccat atctgtatgg cagaaagttt gatttagaaa ctgaccacag      1560
     accattagta tacttatttt cgatgaagga accctcgagt agattaacca aattcaggtt      1620
     agctctcgaa gaatatgatt ttaacataac atacattccg ggaaaagata atgttttggc      1680
     agacgcctta tcgcgaatgt caatcaatga cttaagggaa attaacaaaa aagttgacca      1740
     ggatgttctt attaccacac gaagtaaaac agtgaaagaa aattctgata agaatcaaga      1800
     taatgaagtg actggccagc actcattgtc aggattgtct atcgaaataa tctttaatga      1860
     aagcaatacg atacctgaag tgaaatttaa cgctccaaaa catcaaatta taattcgtcc      1920
     agctaagact ctaatccagc tacggcggat agtagtaatg ctgagagaaa tatgtaaaag      1980
     taaaaatata aacgagctcg ttattaaaaa tacggatcca gggaaacaat tttacaatat      2040
     ggtatatacc tataatttaa ataatggcat gccaccattc agaatagtgg attcgaaagt      2100
     taaatgtatt gaaaataaaa cggagcaaca actcataata aatgattttc atctactgcc      2160
     tacagcagga catgcaggta tcacgaaaac tttaaaaaac atccaaagaa gatatttttg      2220
     gtcgacaatg aagaaagaca ttaccaattt tattaagtct tgtgaagctt gtcagaaaaa      2280
     taagcatata aaaccaaaaa acataccgca gattgtcact actacggcaa gtagtgcgtt      2340
     tagcaaaatc tatctagatt tagttggacc attattgcct agtaatgaag gtcatgccta      2400
     tattttaacg acgcagtgtg aattgactaa atacataact gctacaccta taatcaacaa      2460
     aacaaccgaa gttgttgcca aagcgtttgt ggaaaatgtt attttgaatt atggagtgcc      2520
     agatgaaatt gctactgatc gaggatcaga atttatgtcc gaacttttta cgaaaatttg      2580
     tgaactttta aaaatttcta aattaaactc aacagcttat catcatcagt cgataggcgc      2640
     attggaaaat tcacacaaaa gtttgggaaa ttttttgaga atttatgctt caggaacacc      2700
     aggaaactgg tcttcatgga taaaatttta tcaatttgcg tataatacca ctgttcattt      2760
     ggaaacagac aaatctccat ttgaactagt gtttggaaaa atttgcaagt taccatcaag      2820
     tttaaacaat tccgagaccc caaatccaat ttataattta gatgattatt caaagatact      2880
     caagttcaaa atacaaaaca ctcaaaagga agtacagaaa cggttagtag aatcaaaact      2940
     agaaagagtt aaaaagttaa attgcaacgc gagatttatg aattactctc cagggcagct      3000
     tttgttggtt aggaatgaaa cgggaaataa gttgagtcag atttatgaag gaccttaccc      3060
     agtagttatg gataaaggaa ccaatgtaga agttagaatt agagataaaa tagatattgt      3120
     acataaaaat agagtaaaac cttttattac taggaatgcg gcaagtaata cagagaatta      3180
     gcttttagga cgtgtgacgg atgcaatccg tagacgtgtc aatcaattgt caattttctt      3240
     tacttattat caataatcaa ttatcaattt ttagtaatca atagtcagtt atcgatgtat      3300
     taatttctaa aaacttacaa tattcaataa tccgtaatat gtaaccatat atgatatcca      3360
     aattaaatga gtatttctaa tgttgatttt tgtaagcctt gagaaggcag taccaaagat      3420
     atgagatatc taaggtatca tcaacgtcac attagttaaa cgcatttaaa gtaattattt      3480
     ttaaataaaa gaaattgaat gttttaaatt tttaactaaa gataaaaatt taaaaataaa      3540
     taaatagggc gtgttgcgga tgcacccctg actacgctag tggtgtaatg gttgaagtag      3600
     aactcggacg atggc                                                       3615
//
ID   Gypsy-204_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   AAGE02024741;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-204_AA_;
KW   Gypsy-204_AA-I; Gypsy-204_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02024741; Positions    4724    4928.
XX
SQ   Sequence 205 BP; 63 A; 50 C; 43 G; 49 T; 0 other;
     tgtggcggat gcacccctga ccgccgttgg agtgcgataa actaccaaat gcatacacag        60
     cagaaagtgt gtatcgcgcc atacgataga gttaagaaaa acaccgattg aatacaatct       120
     taagttggcc accaaacgag tcggtcttgt ttaattatat cacatcccac caatgctgtc       180
     ttgagaccaa tgtgcgacca tttca                                             205
//
ID   Gypsy-205_AA-I repbase;    DNA;    INV; 2496 BP.
XX
AC   supercont1.58;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-205_AA_;
KW   Gypsy-205_AA-LTR; Gypsy-205_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2496
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.58; Positions 2886800 2884305.
XX
CC   'AAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..2081
FT                 /product="Gypsy-205_AA-I_1p"
FT                 /translation="MADRMNKSELMAWLKQRNVEFPPSATVRHLRTLYESQ
FT                 PREGKIPDNSIDEDSTTSDDEEELDAEIRVLEKRKRIAELRRELAATDAAM
FT                 SKQPNFQDIKHSVPKFANSDSYDASKWITDFERACDAVNGDDLFKLKCIRR
FT                 MMEPGTEAEWYLRIDKLETYKQFRDHFLENFGHVYSVAEVIDKLRKTTFVA
FT                 GKTSVMGYILQMQEIASRANIDEAQTVQIIIDGFRDRSANIAVLYTANNIA
FT                 QLKQLARRYSHLREMNSVPSPSATSARAKNIKTTTTPAKSSDSVQRCYNCS
FT                 GTGHLSAECLKPRREIGSCFRCGSMQHKFKDCPKPAPRNQDRVALVDLVRR
FT                 QPKESIAEDDVAAALSEINMVSVAFLCNENVQPFDTLLSIFDTGSPINLIQ
FT                 RSSVPENLIPTKEVFSGYRSVGGFPLCSYGIVSVLIMYRNRSHILKTYVVP
FT                 DHFISLPLLLGREFLKKFGIILFDTHVSDSPMVTKPTIEITDKNKIKISGE
FT                 ELHCLFRSYQAEYVDCTSSCVQCCHNELSQFVENGPEFVELADQSVPEVYA
FT                 IECESPESYDINPCLGTETQNAIRAIINEDYLNLSNIPAKQHNYEMKLKLT
FT                 SDTPISFAPRRLSYSDKKEVDRIVEQLLSENIIRPSCSPYSFPIVLRTKKS
FT                 GEKRMCVDYRSLNKITVRRRICCYKER"
XX
SQ   Sequence 2496 BP; 754 A; 507 C; 552 G; 683 T; 0 other;
     gcatcagaag tgggatagcg accgcgattt tcataaaagt gtgtaagcgg aaaatggctg        60
     atcgaatgaa taaatccgag ttgatggcgt ggctgaaaca acgcaatgtt gagtttcctc       120
     catctgcaac agtgcgccat ttgcgaactc tgtacgaaag tcaaccacgt gaaggaaaga       180
     ttccagataa ttctattgat gaggattcca ctacgagcga cgatgaagaa gaattggacg       240
     ccgaaatccg tgtactggaa aagcgaaaga gaattgcaga acttcgtcga gagctggctg       300
     caaccgatgc agcgatgagc aagcaaccca atttccagga catcaaacat tccgtgccca       360
     agttcgctaa cagtgattcc tacgatgcaa gcaagtggat tacagatttc gagcgagctt       420
     gcgacgcagt caatggagac gacttattca agctgaagtg tattcgtcga atgatggaac       480
     cggggaccga ggccgagtgg tacttgcgga tcgataaatt ggagacgtat aagcagtttc       540
     gtgatcactt tttggagaat ttcggccacg tatattcggt tgccgaagtt attgataagt       600
     tgaggaagac aacgtttgta gccgggaaaa cttcagtcat gggctacata ctgcaaatgc       660
     aggagatcgc ttccagagca aatatcgatg aagcgcagac agtgcagata atcatcgatg       720
     gattccgtga ccgttccgct aacattgctg tgctgtatac agccaacaac atcgctcaac       780
     tcaagcaact ggctcgacgc tactcacatc ttcgtgaaat gaattccgtt ccgtctccat       840
     cagcaacaag tgccagagcg aagaacatca agactacaac aaccccggca aaatcatccg       900
     attccgttca acgatgctac aattgttccg gaacagggca tctttccgct gaatgcctca       960
     aaccacgtcg tgaaattggt tcgtgcttcc gatgcggctc catgcagcac aaatttaagg      1020
     attgtccgaa gccagcaccc cgtaaccagg atcgagtagc gctggttgat ctcgtacgcc      1080
     gtcagccaaa agaatccatt gccgaagatg atgtggctgc cgctctttcg gaaattaaca      1140
     tggtaagtgt tgcattctta tgtaacgaaa atgtgcagcc ctttgatact cttctttcta      1200
     ttttcgatac gggcagtccg attaatttga ttcaaagatc gtcggttccc gaaaatttga      1260
     ttccgacgaa agaagttttt tctggataca ggagtgtggg cggctttccg ttatgttctt      1320
     atggcattgt ttcagtgcta ataatgtacc gtaatagatc acacatattg aaaacatatg      1380
     ttgttcctga tcattttatt tctcttcctt tgttgcttgg acgcgaattt ttgaagaagt      1440
     ttggaataat tttgtttgac actcatgttt ccgattcacc tatggttaca aaaccaacaa      1500
     ttgaaatcac cgataaaaat aaaattaaaa tttcaggaga agaactgcat tgtttgtttc      1560
     gttcatacca agccgaatat gttgattgta catcctcctg tgttcaatgc tgccataatg      1620
     agttgagtca gtttgttgag aatggccctg aatttgtcga acttgctgac caatccgtac      1680
     ctgaagttta tgctattgaa tgtgaatctc ctgaatccta cgacataaac ccttgtttgg      1740
     gaacagaaac ccaaaacgcc atccgtgcta taatcaatga ggattattta aacctttcaa      1800
     atatccctgc taaacagcat aattacgaaa tgaagctaaa attgacatca gacacaccta      1860
     ttagttttgc tccgcgtagg ctttcatatt ctgataaaaa ggaagttgat cgtattgtcg      1920
     agcaactgtt atcagagaat ataataaggc caagttgttc accgtactcg tttcccattg      1980
     tcctaagaac taaaaaatct ggagaaaaac gtatgtgcgt ggactatcga tcgttaaata      2040
     agataaccgt ccgaaggaga atttgttgtt ataaagaacg ttgataacac gattggtact      2100
     aataaaaagc ttgttcccaa atttaaaggg ccatatcgaa tccataaagt ccttccccat      2160
     gaccgatatg taattagaga cattgagaac ggtcaaatat ctcaactacc ttacgatggc      2220
     atagtcgagg ctgcccgaat aaaacgctgg gcggactggc gtgattcaga tgataagaaa      2280
     ttggaagata tagagctgca catcaacaca tagatgataa gtaatgcacc acttttgggt      2340
     ttgggtgtac aatttagttt actaatctcg agaagttaat agagcacaat ggttactaac      2400
     agtacttata tgtaagtgaa aataagctgc attataattt gtgcttgtat gtatggttgt      2460
     atgatcggga cgatcagtag tcaggaatgg ccgagt                                2496
//
ID   Gypsy-205_AA-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   supercont1.58;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-205_AA_;
KW   Gypsy-205_AA-I; Gypsy-205_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.58; Positions 2884304 2884021.
XX
SQ   Sequence 284 BP; 81 A; 58 C; 64 G; 81 T; 0 other;
     tgtagtatcc gtaccagaat ttccagaaga acggccacac tgttcgaacg caaagtctat        60
     tctcgaaatc aaatctgctt ccgttgcgtt gatgtggttc ctgttccttt tccgctattg       120
     aatcgatgct acatgtgtgt gtgtgtgagg gtgtatgaga acgaatgaac ggatatattg       180
     cacgaaaatg tgccactcga cgcagtttaa cgttaaccgg cgcagcaaac agtcgattta       240
     gaaaataaaa gccgaaaatc agtccattgt gaagtttttc taca                        284
//
ID   Gypsy-206_AA-I repbase;    DNA;    INV; 5639 BP.
XX
AC   supercont1.44;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-206_AA_;
KW   Gypsy-206_AA-LTR; Gypsy-206_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5639
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.44; Positions 1395213 1400851.
XX
CC   Positions [4305-4772] - Integrase core
CC   'CTCTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1188..5477
FT                 /product="Gypsy-206_AA-I_1p"
FT                 /translation="MTLTSIADPYVPYSMPFSQYQEQLEWIFKYNELPEDR
FT                 YKTSFLAVCGKEVFTELKRLFPGRDFNELTYKQMTDELKKRYDKNDSAVVH
FT                 SYKFWTKRQGRNESLEDFVITVKNLAERCDFGEFKERAIRDMLVIGVNDTQ
FT                 LQKRLCDEEDLSAAKAERLILNSEISASRTKQLNHDDDRRVSVVARLGQRS
FT                 DVSRSRNRFRNRSRSFDRNRSFSARSRSNSRYPSKRGGVSGKPLYLCSFCK
FT                 KTGHTRKFCYRLHGKSPRKNQASVKFVDSPKPSSSSKDATLFKRLKKDLDS
FT                 DSDYSDGMPCLMISSVNKISDPCYVEVLINRKRLTMEIDCGSAESVISEEL
FT                 YLRNFANCEMQYCNKKLVVIDGNKLKVVGKILVEVQLAGNRKQLSMVVLRC
FT                 NNDFIPLVGRSWLDEFYTGWRNTFTNPILTVGNIDVADEQKVVEEVKSKFP
FT                 TIFTKDFSSPIVGYKGDLILKEDIPIFKKAYEVPLRLRQQVVDYLADLEQQ
FT                 GVITPVEASEWASPVIAIVKKDQSIRLVIDCKVSINKVLLPNTYPLPVAQD
FT                 LFATLSGSTIFCSLDLEGAYTQLLLTDRSKRFMVINTIKGLYTYNRLPQGA
FT                 SSSAAIFQKVMDQVLCGLENVSVYLDDVLIAGKDFSDCKKKLLLVLERLAK
FT                 ANIKVNWKKCKFFVSQLPYLGHVLTDKGLLPCPDKVKTIREAKAPRNVSEL
FT                 KAFLGLVTYYSKFIPNLSTRISCLYNLLKKNVTYCWTDKCEKAFNDCKGFL
FT                 LNPNLLEYFDPYKPIVVVTDACSYGLGGVIAHLVEDEEKPICFTSFSLNSA
FT                 QKNYPILHLEALAVVSTVKKFHKFLYGMHFTIYTDHKPLIGIFGKEGKNSI
FT                 SVTRLQRYVMELSIYDFDIVYRPSSRMGNADFCSRFPLSDEVPKELAREYI
FT                 KNLNFSDEFPINYKEVARETLNDEFLQSILKYLKQGWPQRLERRFVDVYSH
FT                 YQELEEVEGCVLFQDRVVIPERMKNKILKMLHMNHSGISKIKQLARRTVYW
FT                 FGLNKDVEDYVKTCVICHQMTAINKKAPYSQWIPTKKPFSRIHADFFHFDR
FT                 KVFFVVVDSFTKWIELEYMRYGTDCNKVLKVLLGIFARYGLPDVVVTDGGP
FT                 PFNSDKFVKFLENQGILVMKSPPYHPESNGQAERTVRLVKDVLKKFFLDPD
FT                 MRRLDIDEQIAYFLSNYRNICLDKGQFPSERLLSYKPKTMLDLINPKNNFK
FT                 HHLTNSHDDPDFVDEKGDKKPDAFTKLKNGDLIFYKNFNTTDIRRWLPATF
FT                 LRQISDATFQISLGGRIVLAHKRQLKLSSDTQRKGTLVFPFESVNTPVKDT
FT                 ALLLPPNPEAATVSSSLTNQEASILSSVPLSESLLSSSPVRNNFRTTGKRR
FT                 REDEEHDSEDSSSPEFEFYGYPADSFIFANDEPDFENQESDPLPVVSNRRS
FT                 KRRRNKKRRKSDFVYY"
XX
SQ   Sequence 5639 BP; 1728 A; 944 C; 1229 G; 1738 T; 0 other;
     gtgacgtacg aggatagatt tttttttttt ttgaaaaagt gatagttttt cattacttaa        60
     tttttttcgc gtgtgaattt tgtgaaaatt tttagtggat cgaggcaatt tccacaagtt       120
     ttatccaagg agctcggcgt aagtaaattt tccctccttg tgaaaagaat tttttccacc       180
     atatttttat gcttggttgg ccattgttct gtgttttatt gaaatcaatc ttttgtgcca       240
     gaacaataac ctcgctttgt tctattgttg gtgatgaaaa gctgaaaagt gacaattttc       300
     ttaaattata tttggtgtag acaaaagcca ttataaaaac gccattttgt caaaacgtgg       360
     taaaattttg tcgacgataa atttttctac acacactttt tcgcattaca tatttacagc       420
     atatttttta cgagaatcac aaacaccagc agaaattttc tcagtgtgcg aatcagcgta       480
     ccagaatatc ccagtgactg ggtacgcaaa agggaaaatc gacgaaaatt ttgacagttc       540
     cgaagaagta gtgtgcgtga gttgagcgga ttgcgaagga ctgaattcac cactaccgac       600
     aactcgagcg acagagtttg gtttacgtct gaagtcaaca gagaaaagtg catccaaagt       660
     gcatcagaga tcaacgaact agtggcctgc tgtgaaaacc cgctagccgg cgaagaattg       720
     gttgtttttt gaggactgcc gtttggaaag tgcgttgatt ttctgcagtg gaagccattc       780
     atctggttgg atttgccatc aaggacatgg tgtacgtgct gctgggattc gccatcgttg       840
     ctactgttgc tgttgtggac tgtggatgca gaagtgcatc tgaaggatcg ttcgtttggt       900
     gctacaggga ttttgcatgc agaagtgcat ctagaggaga ttttggtgcg gatttggttg       960
     ctgctacagt ttttgagcgg attttgcttg cggaacgcaa cgttttatcg agagtgcttt      1020
     ttgtcatcat aaatcaggta cgtggttgtt ttttttgttt acttttttga tcttttttgt      1080
     gcaagagcaa gattattttt tgattttatt ttattttgac tattgattga gttcgatttt      1140
     aatttgtttt tttttgtgta aaattcttgt gcatttcttt ggaaaggatg accttgacat      1200
     caattgcgga tccttacgtg ccgtattcaa tgccattcag ccaatatcaa gagcagctgg      1260
     aatggatttt taaatacaat gaattgccag aggatcgtta caaaacgtct ttccttgcag      1320
     tttgtggaaa agaagttttc acagaactaa aaaggctttt tcctggaaga gatttcaatg      1380
     aactaacata caagcaaatg acagatgaat taaagaaacg ttatgacaag aatgattctg      1440
     cagtagttca tagctacaaa ttttggacga aaagacaagg caggaatgaa tctttggaag      1500
     attttgtgat aacagtaaaa aatttagcag aaaggtgtga ttttggagaa tttaaggaaa      1560
     gggctatacg cgatatgctc gtgataggag tgaatgatac tcagttgcag aagagacttt      1620
     gcgatgaaga agatttatct gctgcaaagg cagaacggtt gattctcaac tctgagattt      1680
     cagctagtag aacgaagcaa cttaatcatg atgacgacag gcgagtaagc gtagtagcaa      1740
     gattgggtca gcgatcggat gtttccaggt ctagaaatag atttagaaac agaagtcgta      1800
     gttttgacag aaatcgatca ttttcagcca gaagtagaag taacagtaga tatccaagca      1860
     aaagaggtgg agtttcaggt aaaccacttt acctttgttc cttttgcaag aaaactggac      1920
     acactagaaa attttgctac cgtttacatg ggaaaagccc tcgcaaaaat caagctagcg      1980
     ttaaatttgt agattctcca aagccatctt ctagctctaa agatgcaaca cttttcaaga      2040
     ggttgaagaa agatttggat tcagattcag attattctga tggaatgcct tgcctcatga      2100
     tttcttccgt caataagatc agcgatccct gctatgtgga ggtgttgatt aataggaaac      2160
     gtttgaccat ggaaatcgat tgcggttcag cggagagtgt gatttcagaa gagttgtacc      2220
     tgcgaaactt tgcgaattgc gagatgcaat attgcaataa aaaactagtt gtgattgacg      2280
     gtaacaaact caaagttgtt ggaaaaattt tagtggaggt acagctcgcc ggaaatcgga      2340
     aacaactcag catggttgtt ttacgctgca acaatgattt tatcccgctg gtaggccgct      2400
     catggttgga tgaattctat accggatgga gaaacacttt tacgaatcct attttgactg      2460
     ttggaaacat tgacgtagca gacgagcaga aagttgttga agaagtaaaa agtaagtttc      2520
     cgacaatttt taccaaagat ttttctagtc caatagttgg ttataaggga gatttaatct      2580
     tgaaggaaga catacccatt tttaagaagg cctacgaagt tccattacgt ttgagacagc      2640
     aagttgttga ttatttggca gatttagaac agcaaggagt aataacgcca gttgaagcca      2700
     gcgaatgggc ttcgccggta attgctattg tgaagaagga tcaaagtatt cggttggtga      2760
     tagactgtaa agtctccatc aataaagttt tgcttccaaa tacgtatcct ttgcctgtag      2820
     cgcaggatct gtttgctaca ctttcgggtt caacaatttt ttgttctttg gacctagagg      2880
     gtgcttatac tcagctgctt ttaacggatc gttcgaagag gtttatggtt ataaacacca      2940
     taaagggtct ctacacctac aatagactcc ctcaaggagc ctcatcaagt gcagctatat      3000
     ttcaaaaggt catggaccaa gtcctttgtg gtttggagaa tgtttcagtt tatttggacg      3060
     atgtactgat tgcgggtaag gacttcagcg attgcaagaa gaaacttttg ttggttttgg      3120
     agagacttgc caaggccaat ataaaagtaa attggaaaaa atgcaaattt tttgtttcgc      3180
     agttgcctta cttgggacat gttttaacag acaagggttt acttccctgt cccgataaag      3240
     taaaaactat ccgtgaagcg aaagctccac gaaatgtttc agaattgaag gcatttttgg      3300
     gacttgtaac ttactattct aagttcattc ctaatttgtc cactcgcatc agttgccttt      3360
     acaatctttt aaagaaaaac gtgacatatt gttggacaga caaatgcgaa aaagcattca      3420
     acgattgtaa aggatttctt ttaaacccaa accttttaga gtattttgac ccgtataagc      3480
     ccattgtcgt agtaacagat gcttgcagct atggtttagg aggtgtaatc gctcatttgg      3540
     ttgaagacga agaaaagcca atatgtttca cctcattttc tttgaacagc gcacagaaaa      3600
     actaccccat tttgcatctt gaggctttag cagttgttag cacagtgaag aaatttcata      3660
     aatttcttta cgggatgcat tttaccattt acaccgatca caagccttta atcggtattt      3720
     ttggcaaaga gggtaagaat tccatttcag tgacgcgttt acagagatac gttatggagc      3780
     tttctattta cgattttgat attgtgtatc gaccttcttc aaggatgggt aatgccgatt      3840
     tttgtagtcg ttttccttta tccgacgaag ttccaaaaga gttagcaagg gagtacatca      3900
     aaaaccttaa cttttccgac gaatttccaa taaactataa agaagttgcc agagaaacct      3960
     tgaacgacga atttttacag tcaattttga aatacctgaa gcaaggttgg cctcagagat      4020
     tggaaaggcg cttcgtggat gtgtactctc attaccagga gcttgaggaa gttgaaggat      4080
     gcgttttgtt ccaggatcgc gtggttattc ctgagagaat gaagaacaaa attcttaaaa      4140
     tgcttcatat gaatcactca ggtattagca aaataaagca actagcacgg aggacagttt      4200
     actggtttgg actgaataag gacgtggagg actatgtaaa aacctgcgtg atatgccatc      4260
     agatgacagc gataaacaaa aaagctccgt attcccagtg gatcccaacg aaaaaaccct      4320
     tcagcagaat ccatgcggat tttttccact ttgataggaa agttttcttt gtagtcgtgg      4380
     acagctttac caagtggatc gagctagagt acatgcgata tggaacggat tgcaacaagg      4440
     ttttgaaggt tcttttggga attttcgcca ggtatggttt gccggacgtt gtggtcacag      4500
     atggaggacc acccttcaac tccgacaaat ttgtaaagtt tttggaaaat caggggattt      4560
     tggtgatgaa aagtccaccg tatcacccgg agagtaatgg acaagcagag agaactgtta      4620
     ggctggtcaa ggacgtcttg aaaaagtttt tccttgatcc agatatgaga agattggata      4680
     ttgatgaaca aatagcatat tttttgtcta attatcgtaa catttgttta gacaaaggcc      4740
     agtttccttc tgaaagatta ctctcttata aaccaaaaac tatgttggac ttaattaatc      4800
     ctaagaataa ttttaaacac cacttgacta actcgcatga tgatcctgat tttgtcgatg      4860
     aaaaaggtga taagaaacct gatgcattta ctaaactcaa gaatggagat ctgatttttt      4920
     ataaaaattt taacactaca gacatcagaa gatggttgcc agccactttt ttaagacaaa      4980
     tttctgatgc tactttccag atttctcttg ggggaaggat agtgttggcg cataagcgtc      5040
     agcttaagct atcgtcggac actcagcgca agggaacttt agttttccca tttgagagtg      5100
     tgaatacccc agtaaaagat acagcactcc ttttaccgcc aaatccggaa gcagcaacag      5160
     tttcgtcatc tctaaccaat caagaagcat caattttgtc atcggtacca ttatcagaat      5220
     ctcttttgtc atcgtctccg gtaaggaaca attttcgtac tactggtaag agaagaagag      5280
     aagatgaaga acatgattcc gaagatagtt ctagtccaga attcgaattt tatggctacc      5340
     cagccgattc attcattttt gcaaacgatg agcctgattt tgaaaatcag gagtcagatc      5400
     cacttccagt ggtttcaaat aggagatcaa aacgaagaag aaataagaag cgtagaaaaa      5460
     gcgattttgt ctactattaa tagaatcgaa taagcaagaa atctataaat aaattgtaaa      5520
     tataatttag tgtatacatt taagcataat gtgcgttcga aggtttttaa attgaattag      5580
     ttggatttta aataaattta gaataaatga attattctcg aactaaagga tggaggagt       5639
//
ID   Gypsy-206_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   supercont1.44;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-206_AA_;
KW   Gypsy-206_AA-I; Gypsy-206_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.44; Positions 1394999 1395212.
XX
SQ   Sequence 214 BP; 86 A; 30 C; 42 G; 56 T; 0 other;
     tgtagtagtg acaaacgctt gagaactcgc tcagagaaaa caagagatag catgaagaga        60
     gaaaagggaa tttagaggaa gttcagctat gtaaggaata ggtgaaatat acatgattaa       120
     aagttttgtg actaccatcg aaacaagacg tgtttttact acaatttaat atagaacaga       180
     aatctttaaa cctctcactt tacaagtcat taca                                   214
//
ID   Gypsy-207_AA-I repbase;    DNA;    INV; 5821 BP.
XX
AC   supercont1.1553;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-207_AA_;
KW   Gypsy-207_AA-LTR; Gypsy-207_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5821
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1553; Positions   33694   27874.
XX
CC   Positions [2817-3242] - Reverse transcriptase
CC   Positions [4305-4781] - Integrase core
CC   'GGTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           778..2001
FT                 /product="Gypsy-207_AA-I_1p"
FT                 /translation="MMPPWMFGNPQMQMWAAQQMWGAKSVEQFSKHKNTHN
FT                 DQEHVDRSKSKSRQSSRRVRPKITSTSSESKDSSDSESGWPSDDPPKPVRQ
FT                 KKRGFKSGKRPVSDWRLKYDGADNGQNLMKFLKEVEFYAKSEDMSPKDLFR
FT                 SAIHLFNGAAKTWFMTGFENEDFMSWEELKEELKREFLSPDHDHTSEIRAI
FT                 ARKQGPRETFQDYFIELQKIFNSLTKPMTERRKFEIVFRNMRADYKGHVVS
FT                 SEIDNLADLKKFGRRLDATYWYKYHTSNNDSNTRGKPAQVNEINTGTKPKS
FT                 KAKSEDKQKSRTFHNSALDRRGSDEEGESRPRKSKSPLRFNEQKEGLQILV
FT                 EKYKPLKDGHCFNCRLQGHHARDCDRPKHKYCQKCGFMNVDTSSCPWCAKN
FT                 ASKTVPEGRQFDRQ"
FT   CDS           1908..5162
FT                 /product="Gypsy-207_AA-I_2p"
FT                 /translation="MRFHECGHLFVSVVRKKRVENCPRGQTVRSTVKSLNN
FT                 IYDIKDALQTSGFDKVSNIEYVHSHNFQINEAIISLENDNRPFVKVSVFET
FT                 PLVGLLDSGAHLSILGIGALKLIRKCSLKVFPSDTTLRTANGEALEVTGLV
FT                 YLPLTFNGATKMIDTLVVPSLKRRILLGMNFWRAFEIRPTVGQTQVEEVVV
FT                 DADDPDSHSTLTGSDTDLSEEQIARLDQIKVQFKIATEGVLDTTDWISHRI
FT                 ELTEEAKKLAPARINPFPVSPKKQELINAELNKMLECKIIEKSYSDWALRL
FT                 VPVDKSDGTVRLCLDARKLNERTVRDSYPLPHSDRILSRLGKANFITTLDL
FT                 SKAFLQVPLHPRSRKYTAFSVLGRGLFQFTRMPFGLVNSPATLSRLMDRVL
FT                 GSGELEPNVFVYLDDIIVVSETFEEHLTILQEVASRLKAANLSINLDKSHF
FT                 CVQEVTYLGYILGRTGLRPNPDRVAAIVNYERPTSLRALRRFLGMCNYYRR
FT                 FLANYSAYTQPLTDLLKNKPKSVSWNDKAEASFNKIKELLISAPILTNPDF
FT                 TRPFTIHCDASDAAIAGVLTQTHDGIEKPIAYYSQKLSTTQQRYFATEKEG
FT                 LAVLNSIEKFRCYIEGSKFTVYTDASALTYIMRSSWRTSSRLCRWSIELQR
FT                 YDMTVLHRRGADNIVADALSRSVEELTVSKQDQGWFTDMVRKVQADPEKFK
FT                 DFRYENGILKKLVSSQEDSLDYRFAWKTCVPENLRDKVLVEEHDDKMHLGA
FT                 DKTLALVKKKYFWPKMLNDVKTYIRKCSLCRQNKPANQSQIPEPGRQRLTN
FT                 KPFQIIALDYIQSLPRSKNGNAHLLVIMDLFSKWCLLTPVRKISASSVVKI
FT                 LEESWFRRYSVPEFLITDNASTFLSSEFKTLLTKHKIQHWKNARHHSQANP
FT                 TERLNRTINACIRSYVKENQKLWDTRVSEIEYCLNSTPHTATGFSPYKVLF
FT                 GHEIVGSGEEHKIDRETDEVSDEERLERKRKIDERIYSIVERNLKKSHDKN
FT                 IRTYNLRSKSSAPVYTIGQRVFRRNFRQSSAADSYNAKLDALYVPCTVLAR
FT                 VGTSSYELADESGKPIGVFSACDLKPEA"
XX
SQ   Sequence 5821 BP; 1792 A; 1307 C; 1316 G; 1406 T; 0 other;
     attggcgccc aacgaaaatt taaatttgat atccttctcg tcccccggaa ggggtgataa        60
     aaacagctcg ctgttttaga gtatatcttc gtcctccaaa cgaaggaaaa ttgggtttga       120
     gaactgtaaa tctaaattca cttccaagat ggatgttgaa ttcgaaacgt tgtatgcagg       180
     tttggcgatt catcacctcg atcgcgagga gattgaatat gaattgaaaa ttcgcggact       240
     accgtttacc gaaaccgaaa cgcgcgcggc tttgatgcga cggttgaaag accaactgaa       300
     acaggataaa ggaagggtca atcaggacct ggacttcgac cggttggata ctaccgtaga       360
     caatgaaatt aaaattatcg atgctaaagt gaatcaaatt aaagattttc ttacgaaccg       420
     ttcaaaattc gagggaattc gcgaaagtct caaaacgagg cttacacatt atttcgcacg       480
     ggcgaaacga ttaccggaga acaccgaaag agacgaagat ctcgcggaca tagatgcgtt       540
     gattgcatgt attcgaggag catttaatac ccatttttca ttatttgcgg gacagcgaga       600
     tgttatcgaa caactcaatc aatcgttttc acagttgtta gcgaacaagc ggctgaagaa       660
     aagcaagatg aagaggtaga aacccttgat tcttctaatc gatcgaataa gagaaaccta       720
     cagtcagtcg acaaccccgt cgcgaatccg aatttagcag caaatttcgt accgtttatg       780
     atgccaccct ggatgtttgg gaacccacag atgcaaatgt gggctgctca gcaaatgtgg       840
     ggagcaaaat ctgtagaaca attttcaaag cataagaata ctcataacga tcaagaacac       900
     gtggataggt ctaaaagcaa gtcgcgtcag tcgtctcgtc gcgtgagacc gaaaattacg       960
     agtacaagtt ctgaatccaa agattcgtct gattcagaat cgggttggcc atcggatgac      1020
     cccccgaaac cggttcgtca aaagaagcgc ggttttaaat cgggtaagcg tccagtgtcg      1080
     gactggcgac tgaagtacga cggtgcagat aacggtcaga acttgatgaa gtttctgaaa      1140
     gaggtagagt tttacgcgaa atcagaggac atgtcgccga aagacttgtt cagatcggcc      1200
     atccacttat tcaatggagc cgccaaaaca tggtttatga ccggttttga aaatgaagat      1260
     tttatgtcat gggaggagct caaggaggag cttaaacgcg aattcttaag tcccgaccac      1320
     gaccacacgt ccgaaatacg cgcgatcgcg aggaaacaag gtccacggga aacctttcaa      1380
     gattatttca tcgagttgca aaagattttc aactcattaa ctaaaccgat gaccgagcga      1440
     agaaaattcg aaatcgtgtt tcgtaacatg cgagcggatt acaaaggcca cgtggtgtcg      1500
     tccgaaatcg acaatctggc cgatttaaag aaatttggca gacggttaga tgcgacgtac      1560
     tggtacaagt accatacgtc caataatgat tcgaatacac gcggtaaacc ggcgcaagta      1620
     aacgaaatta acacggggac taagccgaaa tcgaaggcca agtccgagga caagcagaaa      1680
     tcgcgtacgt ttcataattc cgctctagat cgtcgcggtt ccgacgaaga aggtgaatcg      1740
     cgtcctagaa agtcaaaaag tcctctccga ttcaatgagc aaaaagaagg tttgcaaatt      1800
     cttgttgaaa agtataagcc acttaaagat ggtcattgct tcaattgtcg tcttcaaggt      1860
     caccatgctc gcgactgcga tcgaccgaaa cacaaatatt gccagaaatg cggtttcatg      1920
     aatgtggaca cctcttcgtg tccgtggtgc gcaaaaaacg cgtcgaaaac tgtccccgag      1980
     ggcagacagt tcgatcgaca gtaaagtccc ttaacaatat ttacgacatt aaagatgctt      2040
     tgcaaacctc tggatttgac aaagtgtcca acattgaata cgtccattct cataacttcc      2100
     agataaatga ggcaataatc agtctagaaa atgacaatag accgtttgtc aaggtttccg      2160
     tgtttgaaac gcccttggtt ggtctattgg atagcggagc tcacctgagt atcctcggaa      2220
     taggagctct gaaattgatt cgaaaatgca gcctaaaagt ttttccctcc gatacaacac      2280
     tgcggaccgc caacggcgaa gcgttggaag tcactggctt agtatactta cctctaacat      2340
     ttaatggagc tactaaaatg atcgacactt tagtggtgcc ctcgctcaaa agaaggattc      2400
     tgttgggaat gaacttctgg cgagctttcg aaatacgccc cactgtcggc cagactcagg      2460
     tcgaagaagt ggtggtggat gctgatgatc cggatagcca ttccacctta acaggttcgg      2520
     acacagattt gtccgaagag caaattgcta gactagatca aattaaagtg cagttcaaga      2580
     tcgccacaga gggcgtgtta gacacgacag actggattag ccaccgtata gagcttacgg      2640
     aggaagctaa gaagcttgcc ccagctcgaa taaatccatt tcccgtttca ccgaaaaaac      2700
     aggagttaat taacgccgaa ctcaataaaa tgctcgagtg taaaatcatt gaaaaatcct      2760
     acagcgactg ggctctgcgt ttagtccctg tggacaagtc tgatggaaca gtgcgccttt      2820
     gcctggatgc acgcaagctg aacgaacgta cggtcaggga ttcctatccc ctcccacact      2880
     ccgaccgaat tttaagccga ctaggaaaag ctaacttcat taccaccttg gatctttcca      2940
     aggcctttct ccaagtaccc ttgcacccta gatcgcgcaa atacacggcc ttttcagtgt      3000
     tgggaagggg attgttccag ttcacccgta tgcctttcgg tctggtgaat agcccagcaa      3060
     cgctatctcg cttgatggac cgggtcttgg gcagtggtga actggaacca aacgttttcg      3120
     tatatcttga tgatataata gtcgtcagcg aaacgtttga ggaacacctg accatacttc      3180
     aggaggttgc atccagacta aaagctgcca atctatccat caatttggac aaatcacact      3240
     tctgtgtgca agaagttacc tatcttggat acatcttagg ccgtactggt ctgagaccaa      3300
     atccagatag agtagctgcc atagtcaact atgagcgacc aacttcctta agagcgttga      3360
     gaaggttctt ggggatgtgt aactactata ggaggttttt ggccaactac agtgcttaca      3420
     cacaaccctt aacggacctt ctcaaaaaca aaccaaaatc agtcagttgg aacgataaag      3480
     ctgaagcttc cttcaataaa attaaggaac ttctaattag cgccccaata cttacaaacc      3540
     ccgattttac tcgaccattc acaattcact gcgatgcgag cgacgccgca attgcgggcg      3600
     tactcacgca aacgcacgat gggattgaaa agccaatcgc gtactattcc caaaaacttt      3660
     ccactacgca gcaacgatat ttcgcaacag aaaaagaggg cctcgctgtc ctcaattcta      3720
     ttgagaaatt tcgttgctac atagagggaa gcaagtttac ggtctacaca gacgcctctg      3780
     cgttgaccta tattatgaga agtagctggc gtacttcatc tcgtctatgc cgttggagca      3840
     tagagcttca aaggtacgac atgactgtct tgcaccgtcg aggcgcagac aacatcgtag      3900
     cggacgctct atcccggtcg gttgaagaac tgacggtctc taaacaggac cagggttggt      3960
     tcaccgacat ggtaagaaaa gtccaggctg accctgaaaa gttcaaagac ttccggtatg      4020
     aaaacggaat tcttaaaaag ctggtctctt cgcaagagga ttccttagat taccgctttg      4080
     cctggaagac atgtgtgcct gaaaacttgc gcgacaaagt tcttgttgaa gagcacgatg      4140
     acaaaatgca ccttggtgcc gataagacgc tagcattagt gaagaaaaaa tatttctggc      4200
     ctaaaatgct caatgacgtc aaaacttaca tcagaaaatg ttcactatgt cgacagaaca      4260
     aaccggccaa ccaatctcag attccagagc cgggtcgaca aaggttaacg aataagccat      4320
     ttcaaattat tgcgctagat tacatacagt ccctcccacg cagcaagaat gggaatgccc      4380
     atttgctcgt gattatggat cttttttcga agtggtgtct actcacaccg gtgaggaaaa      4440
     tttcagcatc atcagtcgtc aaaatcttag aagaatcctg gttccggaga tactcggtcc      4500
     cagaattctt gataacggac aatgcatcca catttttgtc gtcggagttc aaaactcttt      4560
     tgacgaaaca taaaatccaa cattggaaaa atgcacggca tcacagccaa gcaaatccaa      4620
     cagaacgcct taatcgtacg ataaatgcat gcattagatc gtacgtgaaa gaaaatcaga      4680
     aattgtggga cacccgtgtg tccgagatcg aatattgcct aaacagtacc ccccatacag      4740
     ccacaggatt ctccccctac aaggttcttt tcggacatga aatagtggga tcgggagagg      4800
     aacacaagat agacagggag acggacgaag tgtccgacga ggagaggttg gaaaggaagc      4860
     ggaaaatcga cgaaagaatt tattccattg tggaaagaaa cttaaaaaaa tcacacgaca      4920
     aaaacattcg cacctacaat ctacggtcga aatcttccgc tccagtctac acgattggac      4980
     agcgagtctt ccgacggaac ttccgtcaat cttcagcagc ggactcgtac aacgccaagc      5040
     tggatgcctt gtacgtgccc tgtactgtcc tcgcacgggt tggcaccagc tcgtatgagt      5100
     tggctgatga atcgggaaaa ccaatcggtg tgttttccgc ctgcgatttg aagcccgaag      5160
     cctgaaagaa acgattcaat tcgatcttca aaactttcgt tatatttgat tgataactca      5220
     ccattgagta gaaatcgtcc ggacgtccat tcataaaatt gatcgcagca ggatcgtcga      5280
     gtcctgaaaa taagatagag aagcaaagcc aaggtcagag tcgaccaatg taaacattag      5340
     aaaagtaaac ttacctggca aaacataatt ccctcctcca aaagaatcat ctctccatca      5400
     gctgatccca gaaacatcga gtggcatcac aaccggtata ggctcctctt ccatcgctga      5460
     tattgcgcgc ccgagatttt tctttcgccg gacgaaattc tagtgaaaca gccggaaaaa      5520
     ctcgtgaaaa cttcgtaata acccgcggaa taaatcgacg actcgcatgc accgtaggta      5580
     aattcgcgtc gggatgtaaa caaacaggtt gacggtttga cagttctcaa cacccagtgg      5640
     tgttggttga gttactttga gttccttttt ctttttcgtg agagcgaaaa aggagaaagc      5700
     gtttagaaaa gggcctattt tggtcaattt gttttaatca aagaaaattt gattatgaat      5760
     cagattagaa tcatacatcc gaatgaaaat tcttttcatt cgaagaagga tgatggggta      5820
     a                                                                      5821
//
ID   Gypsy-207_AA-LTR repbase;    DNA;    INV; 1751 BP.
XX
AC   supercont1.1553;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-207_AA_;
KW   Gypsy-207_AA-I; Gypsy-207_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1751
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1553; Positions   27873   26123.
XX
SQ   Sequence 1751 BP; 477 A; 399 C; 386 G; 489 T; 0 other;
     tgtaaccagt tgttacaatt tttacttgct ggctccaccg caagtggata ttcccttttt        60
     cccgaaataa cattacgccc tttccaaaag taagtctccc actaacacta gtgtatggga       120
     caggggcggc actcagtggc ttgatgagtg ttcgagctct gcaccactca caacattaca       180
     tagtgtgggt agcggctttt gagcattgta aaacggctct ccgcggtgta acataagttc       240
     gcccggatat gtgctattcg ctcatagggg gagcacaaat cgctattggg gtaaaccgcc       300
     atgttatgag cataactgtc aaaaatcgtt cgtgactttt aagcacgaac gattttagat       360
     agttcggctc cactgataaa ttttaagttc ttataaatag tttgaaactg ctaagaaaga       420
     tctcttttgc ctggaaaatc tgaaagtgat aagaagtgcg cgttgttagt tgaaagtttt       480
     ttacaaaggt tagaagtaaa gtaataagaa aagtggaagt gttaataatt agtgcttttg       540
     tttctttgta gataggtggt gattgttagt tggacaatag acaattgtta gtattgttag       600
     tctattagtc aatagtcaaa gctgcttaaa tagtgtatta gcagtattag tatggttagt       660
     aacaaaaagt gatcattgtt tcctaaagct aatgtgaata aaaccaatta tagagaacac       720
     gctaaaaaca tacgaaacag tgtgaaacaa cagttatatt aagacaaaca caagaaaaag       780
     gtaatttaat gttttgtgaa tagttgctag tttgttagag gctaaaatat gcgacgtcac       840
     agggtactaa ttttgtgtgc aggtccacga agcgggcctt tttcttctcc ttttgagttt       900
     ttcttcggca gacgagttcc tggaaagtgc tagtgacacg gagtgaacgg aagtggccag       960
     aatcgaagcg caaccaggcc gagacagccc agacgccatc gctgtccgag aattcgggtc      1020
     gttaccgtca acgaacgacc gttccgttac accaccgcca tcttccaagc cccagtgcct      1080
     ccgtagtcca ccgccattgc ctccgtcgcc attccatcaa gcgaccagtt ccccgtcggg      1140
     actcttgttc ttcgccgcca tcaacgtaca ccgccggtgg cccgctattg ccatcgggtc      1200
     tcgtccggat tgtgtcaccg ccaatcgacc gccttcgtcc accattgaat ccatggaagg      1260
     tccagtcaac cgccgatgaa atccgttaaa gccacctcca agaaccgcat gccaccgaac      1320
     ccgccaccaa cgccaccagg accgtgatcc gtttatgcag caagcacgca agtacccctg      1380
     tgacatgacg tcagcaataa attgtaatcg ttattttgaa actttgcctc agacgctatt      1440
     agttcaaaga gcatagccct ggttaattaa tatttccact tcttttcgta tttccgcttt      1500
     gtcgggttca aaaggaaccg aatttgcttc cactttcgga tttccctagc agtttcacta      1560
     tttcgaattt aaaaaccctt tggtgtcgaa cattgcagtt tagttcaaac gacacgtgtg      1620
     aagccggtgg gctgtagtcc atttcgagac gttccagctc ttagtgagtg cctctcaact      1680
     gtgtgggtgt tgagggaaca agccgataag cgaccctgag gattccttta acccttagct      1740
     agcaggtaac a                                                           1751
//
ID   Gypsy-208_AA-I repbase;    DNA;    INV; 5231 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   26-APR-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-208_AA_;
KW   Gypsy-208_AA-LTR; Gypsy-208_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5231
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-5231
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (26-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 100% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           852..4937
FT                 /product="Gypsy-208_AA-I_1p"
FT                 /translation="MAQSINSILEPYRKGSSFGDWVERLGFLFNMNKIADN
FT                 EKRDHFITLSGPIIFKELKLLYPNSNLAEVPYEEMVTKLKARLDKTESDLV
FT                 QRLKFNVRVQQPDESVEDFVLSVKLQAEFCNYNCNAETFKKMAIRDRIVAG
FT                 IRDKALQQRLLNEENLTLETAEKFIATWEIAKNNAKSMECGSSVDQIAALK
FT                 PLGFTGARLSNLTAIAARENYGTRGESNRGSVKSRLGYYPYQKDQRQQKQW
FT                 RNRGQDKERNRQYSRPDYSQMVCDFCGVKGHIKRKCFKLKNMHRDAVNMIN
FT                 PNTSGTNPDEFLSEMVNRLRADSDSESDADGETNVLQCMHVSSINRISEPC
FT                 LLKVEIDGILFDMEADCGSSVTVMSRKQYFDNFSKPLTKTRRNLIVVNGAS
FT                 LVIEGEVDVLVNFKGICSNLKLLILNCENNFTPLLGRPWLDAFFPNWRHFF
FT                 VNSISSNEQSNQILVDDIRTKFKDIFVKDFSSPIHGFEADLVLKSEVPVFK
FT                 KAYDVPYRLRDKVVEYLAKLECEKVITPIKTSEWASPVIVVMKKNNEIRLV
FT                 IDCKVSINKFIIPNTYPLPIAQDVFAGLAGCKIFCSLDLEGAYTQLSLSER
FT                 SKDFMVINTIKGLYRYNRLPQGASSSASIFQQVMDQVLNGIENVSVYLDDV
FT                 LIAGKNLNDCKKKLFLVLDRLKNANIKVNWDKCKFFVTELVHLGHVISGKG
FT                 LMPCQDKISTIENARVPKNETELKSFLGLINYYHKFIPYLSLKLFPLYNLL
FT                 KTEVKFNWDCKCDKAFEESKKALIEAQILEFYDPNKQIVIVSDASGYGLGG
FT                 VMAHLIDGVEKPIYFTSFSLNAAQQKYPMLHLEALALVCTVKKFHKFIYGK
FT                 KFLVYTDHKPLVGIFGKEGRNSIYATRLQRFVLELSIYDFEIQYRPSKYLG
FT                 NADFCSRFPLDHAIPVELDTELVNSINFGRELPVDFKVIADRTKNDSFLQN
FT                 IISFMTNGWPAKINKQYIDVYANQQDLEFVDECLLYQNRVVIPATMKNAIL
FT                 KLLHANHAGIVKMKRLARQCVYWFGINSDIERYVTTCDTCNSMMIVPKTKI
FT                 NSKWIPTTRPFSRIHIDFFYFEHRSYLLVVDSYSKWVEIELMRNGTDCDKV
FT                 LKKLVALFARFGLPDVLVSDGGPPFNAHAFVNFLKRQGINVLKSPPYNPSS
FT                 NGQAERLVRTVKDVLKKFLLDPEFSHLDMEDQINLFLINYRNNCLSIEGEY
FT                 PSKMIFSYKPKTILDLLNPKLRYKKFLMEQAVHEDLIKSKNSTPIDEDFNS
FT                 KAYGGSRTDSPDPFDSLTAGDELWYKNHNPHCTAKWLKANFTKRLSRNTFQ
FT                 VRIGSVLTMAHRSQLRVRKSGNFHEKPNIRLVRPLPELEAVSQEEFRGFT"
XX
SQ   Sequence 5231 BP; 1684 A; 828 C; 1096 G; 1623 T; 0 other;
     actggcgacg tagaaaaaaa acgtggaagt gcttagtgca gcgtgcggac gacatcggct        60
     gaacaattta ttgtgtgacg aagccatcaa acccggcgct ggtgatacgg aaaagccaac       120
     gccatcacgt agtgcgtaga caatcattgc aaatcgttgg cgggtgcgat tttcggtcga       180
     cgactaactg caactggtgg agttcgttaa ggtgaaggtt cgttaaacga gattcaattt       240
     ggtttggtaa gtttttcgtt ggcgaaatcg agttaccatt tttggtgatt ttggtgagct       300
     gcgggttgta gtggcttgat tatacgccat tttgaaaatt gctttgtgtc tttgttaatt       360
     acacagaaca aataataatt agagaattga aaagaaacaa ttgaaaacaa aagcatcata       420
     gaattatttt attaagagag tttttttctt ttattccatt agacagtggc cgcggaaaca       480
     attggttgac aatttctgcc atcgccaatc tagctgattt ttatcggtga attgactaca       540
     tcatctgact ggtttgctaa accgttgttt gctgaaattc tccgctatcg gcacaggttc       600
     aagctggttt caatccccaa gacgttaact gacggctcgc acggttgcct aggggcaaag       660
     atcgtgagaa gtgaacctct tcttttatcc ctggtcggca aaggctgaag gacttatctg       720
     gtgagtgatt ttatttcttt taccttgaag gagtcagcaa atgcttctat tttaagagga       780
     cattattttt tttagaaata attgtttcat ctgattagtg gtaaccaatt tcagtagttt       840
     caacacctaa catggcccaa tctattaata gcatcttaga accttatcga aagggcagtt       900
     cttttggaga ttgggttgag cggttaggct ttttattcaa tatgaataag attgctgata       960
     acgaaaaacg cgaccacttt attaccctga gtggccctat tatttttaaa gaactcaaat      1020
     tgctataccc caatagcaat ttagccgagg ttccttatga agaaatggtt accaaattga      1080
     aagcacgttt ggataaaact gaatccgatt tggtgcaacg cctaaaattt aatgtacgag      1140
     tgcagcaacc ggatgaatca gtagaggatt tcgtgttgtc tgtaaaattg caagcagaat      1200
     tttgtaacta taattgtaat gctgagacgt ttaaaaaaat ggctattcgt gatcgcattg      1260
     ttgccggtat tcgagataaa gctcttcaac aaaggttgtt aaacgaagag aatttaacct      1320
     tagaaactgc tgaaaagttc attgctactt gggaaattgc caagaacaat gctaaaagta      1380
     tggaatgcgg cagcagtgtg gatcaaatag cggctttgaa acctttgggg ttcactggag      1440
     ctagactgag taatttaact gcaattgcag caagggaaaa ttatggtact cggggagaat      1500
     ctaatcgagg atcagttaaa agtcgattag gttattatcc ttatcagaaa gaccagaggc      1560
     agcaaaagca atggagaaat cgaggacaag acaaggagag gaatcgtcag tatagtcgtc      1620
     ctgattattc tcaaatggtg tgcgatttct gtggtgtcaa agggcacatt aagagaaagt      1680
     gtttcaaatt gaaaaacatg cacagggatg ccgttaacat gattaatccg aacacttctg      1740
     gcaccaaccc ggacgaattc ctgagtgaga tggtcaacag attgcgtgca gattcagaca      1800
     gtgagagtga tgcggatggt gagacaaacg ttcttcaatg tatgcatgtg tcgtctatta      1860
     atagaattag tgagccttgt cttttgaaag ttgaaattga tggtatttta tttgatatgg      1920
     aagcggattg tggttcgtct gtaacagtta tgagtaggaa acaatatttc gataattttt      1980
     ccaaaccatt gacaaaaacc cgaaggaatt tgattgttgt aaatggcgcg agtctggtca      2040
     ttgaaggaga agtggacgtt ttagtcaatt ttaagggtat ttgctcaaat ttgaagcttt      2100
     tgatactgaa ttgtgaaaat aactttaccc ctttgctagg aaggccatgg ttggatgcat      2160
     tttttccaaa ttggagacat ttttttgtaa attctatttc ctccaatgaa caatcaaatc      2220
     agatacttgt tgatgacatc agaacgaagt tcaaagatat ttttgttaaa gatttttcat      2280
     caccaatcca tggtttcgag gctgatttgg ttttgaaatc cgaagttcca gtttttaaga      2340
     aagcgtatga tgtaccttat cgtttacgtg ataaagttgt agaatattta gcaaaactgg      2400
     aatgtgaaaa agttatcaca ccgattaaga cgagtgaatg ggcttctcct gttatagtag      2460
     taatgaaaaa aaataatgaa atacgattag tgatagattg taaagtgtcg atcaacaagt      2520
     ttattattcc aaatacctac cctttaccca tagctcaaga cgtttttgct ggtttagctg      2580
     gatgcaaaat tttttgttca ttggaccttg agggtgctta tacccaatta tcactttcgg      2640
     aaagatccaa agatttcatg gttataaaca cgattaaagg actctataga tacaatcgtt      2700
     taccacaggg ggcctcgtct agtgcttcga ttttccaaca ggttatggat caggttctaa      2760
     atggaattga aaatgtttcg gtatatttag acgatgtttt gatcgctggg aagaatttga      2820
     atgattgtaa gaaaaaattg tttttagtac ttgacagact taaaaatgct aacataaaag      2880
     taaattggga taaatgtaag tttttcgtta ccgaattggt acatttaggt catgtaatta      2940
     gtggtaaagg tttgatgcca tgtcaagaca aaatttctac aattgaaaac gctagagtac      3000
     ctaaaaatga gacagagctt aagtctttcc ttggattgat caattactat cataaattca      3060
     taccttattt gtctttaaaa cttttccctt tatacaattt attgaaaact gaagttaaat      3120
     ttaactggga ttgcaaatgc gataaagcct ttgaagagag caaaaaagca ttaattgaag      3180
     cacaaatttt agagttttat gaccccaata aacaaatagt catagtttca gatgcttctg      3240
     gttatggttt gggtggagta atggctcatt tgatagacgg agttgaaaaa ccaatctatt      3300
     ttacatcctt ttcgctgaat gcagcccaac aaaagtatcc aatgcttcat ttagaagcct      3360
     tggctttggt ttgcacagtt aaaaaatttc acaaatttat atacggcaag aaatttttag      3420
     tttatacgga tcataagcca ttggttggaa tttttggaaa ggaaggaagg aattcaattt      3480
     atgctactag actacagaga tttgttttgg agctatcaat ttatgatttc gaaattcaat      3540
     ataggccatc aaaatattta ggaaatgctg atttttgttc acgtttccct ctcgaccatg      3600
     ctattcctgt ggaattagat acagaattag ttaacagcat caattttggt agggaactcc      3660
     ctgtagattt taaagtaata gctgacagaa ctaaaaacga ttcattttta caaaatatta      3720
     tttcattcat gacaaatggt tggccagcta aaataaacaa gcaatacatt gatgtatacg      3780
     ctaatcaaca ggacttggag tttgtagacg aatgtctact gtatcaaaac agagttgtca      3840
     taccagcaac aatgaaaaat gcaattttga aacttttaca cgccaatcat gcaggaatag      3900
     tcaaaatgaa gcgattagct aggcaatgtg tctattggtt tggaattaat tccgatattg      3960
     aacgatatgt gactacttgt gatacttgca acagcatgat gatagttcca aaaaccaaaa      4020
     tcaattcaaa atggatccca acgacgagac cattcagtag aatacacata gatttttttt      4080
     attttgagca ccgttcctac ttgttagtag ttgacagtta ttctaaatgg gttgaaatag      4140
     agttgatgag aaatggcaca gattgtgata aagttttgaa gaaattagta gctttgtttg      4200
     ctagatttgg tttaccagat gtattagtat cagacggggg tcctccattt aatgcgcatg      4260
     cttttgtaaa tttcttaaaa cggcagggaa taaatgttct aaaaagtccg ccttataacc      4320
     cttctagtaa tggtcaggct gaaaggttgg tgagaaccgt aaaagatgtt ttaaaaaagt      4380
     ttttacttga tccagaattt tcccatttgg acatggagga ccagattaat ttgtttttaa      4440
     ttaactatag aaacaactgt ctttctattg aaggggaata tccttcaaaa atgattttct      4500
     catacaagcc gaaaacaata ttggacttac taaatcctaa acttcgctac aaaaagtttt      4560
     tgatggagca agctgtgcat gaagatttaa ttaagagtaa aaactcaact ccaattgatg      4620
     aggattttaa ttcaaaagct tatggtggtt ctcgaacaga ttcacctgat ccttttgaca      4680
     gtctgacagc tggggacgaa ttgtggtaca agaatcataa tcctcattgc acagctaaat      4740
     ggcttaaagc aaactttact aaaaggctct ctcgcaacac attccaggtg cgaattggaa      4800
     gcgtgctaac catggcgcat cgaagtcaac tacgcgtacg taagagtggc aacttccatg      4860
     aaaagcctaa tattcggctg gtccggccat taccggagct agaagccgta agccaggagg      4920
     agtttcgagg atttacctaa gaagagatca gacgtggaca gaagagaagg atggtcgaaa      4980
     gtgttgatag cccatatctt gaatcagaaa aatcgccgga tggtccaagg cgttcaaaac      5040
     gaaaacgaag agtaaaccat gataatgatt ttgtttataa gtaaaaaggt tgtgaactcg      5100
     aattgatgtt caaaaaaatt ctatactcgt tgaatgttat tattattctt tattgaatgc      5160
     tctgaattat gaattgaata taattgtcaa aactagatat ttgtattctg aacttccaaa      5220
     gagggaagga c                                                           5231
//
ID   Gypsy-208_AA-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   AAGE02029057;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-208_AA_;
KW   Gypsy-208_AA-I; Gypsy-208_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-307
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029057; Positions   69038   69344.
XX
SQ   Sequence 307 BP; 103 A; 54 C; 52 G; 98 T; 0 other;
     tgagatgttt gttataagcg tgtttgctat aacgattctg attattacct tattatacgt        60
     aagctagatt tagagtgtaa aatacaatta catttgtaca taaaatatat accaatacaa       120
     agaagcatcg gaggcagacg aaggtctgat gagaacaaaa ataaatcata agagtcattc       180
     gattctgaca cctagctgga aacagtcgac tttattttcc ctttgttaaa gaaacccaac       240
     agtgtactct ccccagttca accgatttta ttagttcaat ttcaagtccc ttttggagga       300
     cttgtca                                                                 307
//
ID   Gypsy-209_AA-I repbase;    DNA;    INV; 4244 BP.
XX
AC   AAGE02026967;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-209_AA_;
KW   Gypsy-209_AA-LTR; Gypsy-209_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4244
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026967; Positions    2075    6318.
XX
CC   Positions [3225-3683] - Integrase core
CC   'CAGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..2904
FT                 /product="Gypsy-209_AA-I_1p"
FT                 /translation="MVDNARAAGGDQPPIAAAGGGGGGGNLPLNAAAVGGG
FT                 NLPPSFHIDAYDRKKTRWSRWVERLETAFTIYGVVDDNLRRNLLLHLMGPE
FT                 TYETLCDKIAPDNPRTRTFQVIVDTLEQYFNPRPLEISENFRFKCRRQGDK
FT                 DALSPDESVEEYLVALRRIAVTCNFGGYLDTALRNQLVFGLKRNDIRGRLL
FT                 ERRNLTLQDALDVAVSMELSQKGGAEIAGSLSKSEVNAVQHRRGKVYDKKV
FT                 GGKSPSAGKSTGEKYCFRCGDKSHLAKACKHQNTVCSYCNIKGHLERVCMR
FT                 KSSANKGHSGKSEAKYSTVKAIDQRSSSTDDIDVGEVMYGEICALSSSSAA
FT                 KLWLTLVLNGVAVRFEIDTGSPVSIISAQFFQRYFKECHLRKCSLNLVSYC
FT                 DTNIRVLGVLDVIVDCCGVRANLPLYVVDSSKHPLLGREWLKVLNVNWNTI
FT                 LKKPAVVNVIDRAIGSCDTAEHLEQIFAKYAKVFDDSMGKISTVQAKLSLK
FT                 PNTQAVFLKARKVPFNLRAAVDKELDKLESEGVLTKVSHSSCATPIVPVKK
FT                 ADNRVRICGDYKQTVNPHLKVDQHPLPTIDELFASLAGGQKFTKIDLVQAY
FT                 LQMEVAEEDRDMLTLNTHRGLYRPTRLMYGVSSAPAIWQRQIETILQGIEG
FT                 VSVFLDDIKITGPTDAIHLHRLEEVMRRLNYYGIRVNRKKCEFFTDQIEYC
FT                 GYQIDREGIHKVQQKVDAIVSMPRPRNKEEVRSLVGLVNYYGRFYENLSTV
FT                 LYPLNNILKNEVPFVWTKECEKSFRTVKERMQKDNCLVHYSPDLPLILATD
FT                 ASPYGVGAVLSHVFPDGTERPIQFASQTLNRTQQRYMQVDKEAYAVVFGVR
FT                 KFFQYLYGRKFVLITDNQAISKIFSENKGLPVMSALRMQHYATYLQSFDYE
FT                 IRFRKSADHANADALSRLPMQATDPENVIEECDVVEISQIDTLPLTAAELS
FT                 EAQLRISL"
FT   CDS           2910..4193
FT                 /product="Gypsy-209_AA-I_2p"
FT                 /translation="MLIQGLKHGQNVDGKHRFGIDQSEFSFQKGCLLRGIR
FT                 VYIPAVFRKRVLAELHSTHFGTSRTKSLARGYCWWNGMDKEIEELIANCAD
FT                 CQSVRPMPAKVQPHHWEPATKPFQRVHADFAGPYMDCYFFILIDAYTKWPE
FT                 IKVCRSITAENTEAMCREIFSTFGIPSVFVSDHEVQFTATSFQSFLKQNGI
FT                 VHKMGAPYHPSTNGQAERYVQTFKQKLKALKCPRSQLNLELSRLLLTYRKT
FT                 IHPATGQSPSIMMFGRQIRSRLDLMLPRGNEEAPPTTTVRELENGVRVRVR
FT                 DFLTNNKWQFGKVVSKLGSLRYAVKLDDGRIWERHIDHIVKVGVGLLSSGS
FT                 NDSPAREPLRDEPNCSTSTVPSTISPSSQEQETAVADPVAIVPPPDDPVSR
FT                 VPEMSHSSVSPKSETKPPLRRSTRTIKAPQKLNL"
XX
SQ   Sequence 4244 BP; 1140 A; 958 C; 1107 G; 1039 T; 0 other;
     gtttggcgaa cgaggatggt cgacaatgcg cgtgctgctg gtggtgatca gccaccaatt        60
     gctgctgctg gtggtggtgg tggtggcgga aacctgccgc taaatgctgc tgctgtggga       120
     ggaggaaatc tgccaccgag cttccacatc gatgcgtatg accggaagaa aacacgctgg       180
     tcacgatggg tggaaagact tgagactgct ttcacaattt acggcgtggt agacgacaat       240
     ctgcgacgaa acctgcttct gcatttgatg ggaccggaaa catatgaaac gttgtgcgac       300
     aaaattgctc ctgataatcc tcgcacgaga accttccaag tgattgtgga tacactcgag       360
     caatatttca acccgagacc tttggaaatt agcgaaaatt tccgtttcaa gtgtcgtcgt       420
     cagggggaca aagacgccct ttccccggac gaatccgttg aagaatacct tgttgccctt       480
     cgacgcattg ctgttacctg caactttggt ggctatctgg acacagcgct aaggaaccag       540
     ctagtgttcg gcttgaagcg gaatgatatt cgaggacgcc ttctggaacg caggaacctc       600
     actctgcagg atgcgttgga cgtagcggtc agcatggagc tgtcacagaa aggaggcgcc       660
     gagattgctg gttcactttc gaagtcggag gtaaatgctg ttcaacaccg acgaggtaag       720
     gtttacgata agaaagtggg aggaaaatct ccgtcagctg gcaaatccac gggagagaag       780
     tactgctttc ggtgcgggga caaatcgcac cttgctaaag catgcaaaca ccagaatact       840
     gtgtgctcct actgcaacat taaggggcac ctcgagcggg tgtgtatgcg aaagtcttca       900
     gcgaacaaag gtcattctgg aaaatctgaa gcaaaatata gcacggtaaa agccatcgat       960
     cagcgaagta gctctacgga tgatattgat gtgggtgagg ttatgtacgg cgagatttgt      1020
     gcgttgagta gttcgagtgc ggcaaagctg tggttgacgc tggtactaaa cggtgttgca      1080
     gttcggtttg agatcgacac tggcagtccc gtaagcatca tcagcgcaca gtttttccaa      1140
     cgatacttca aggaatgcca cctccggaag tgttcactga atctcgtcag ctactgtgat      1200
     accaacattc gtgttttggg agttcttgac gtgatcgtcg actgctgtgg agtacgagcc      1260
     aacttgccgt tgtacgtggt ggattcgtcg aagcatccgc tgctcggaag agagtggctc      1320
     aaagtgctga acgtcaactg gaacacaatt ttaaagaagc cggctgtggt taacgttatc      1380
     gatcgggcga tcggttcttg cgatactgct gagcacttgg agcagatttt cgcaaaatat      1440
     gcgaaggttt tcgatgattc tatggggaaa atatcaactg tgcaagcgaa gctgagctta      1500
     aagccgaata cgcaggccgt attcctgaaa gccagaaaag ttccgttcaa cttacgtgcc      1560
     gctgtggaca aggaactgga taagctggaa tccgaaggag tactaacgaa agtgagtcac      1620
     agtagctgtg cgaccccgat tgtgccagtg aaaaaagctg ataaccgtgt acgaatttgt      1680
     ggggattata agcagacagt gaatcctcac ctgaaagttg atcagcatcc cttaccaacg      1740
     atagacgagt tgttcgcatc acttgcgggc ggtcagaagt tcaccaaaat tgacctcgtg      1800
     caggcgtatc tccagatgga agttgctgaa gaggatcgcg acatgctcac gctaaacacg      1860
     catcgtgggc tgtaccggcc tacccgtttg atgtatggtg tgtcatctgc tccggcaatt      1920
     tggcaacgcc aaatcgaaac gattttgcaa ggtattgaag gtgtgagtgt tttcctcgat      1980
     gacatcaaaa taacggggcc tacagacgca atccacttgc acagactgga agaagttatg      2040
     cgcaggttga attactacgg catacgtgta aaccggaaga aatgcgagtt cttcaccgac      2100
     cagattgagt actgcggata tcaaatagat cgtgaaggaa tacacaaggt ccaacagaaa      2160
     gttgatgcga ttgtcagcat gccacgtccg agaaacaagg aggaagttcg ttcgttggtt      2220
     ggactcgtca actactacgg ccgtttctac gaaaacctta gtactgtgct gtatccgttg      2280
     aataacattc tgaagaatga ggtgccattc gtctggacca aagaatgcga gaagtcgttt      2340
     agaaccgtga aggagcgaat gcagaaggac aactgtctag tacactattc cccagatctg      2400
     ccacttattt tggccaccga tgcgtctccc tacggtgtgg gtgctgtgtt gagccacgtt      2460
     ttcccagatg gaactgagcg tcccatacag tttgcttcac agacattgaa ccgcacccag      2520
     caacggtata tgcaggttga taaggaggct tacgctgttg tgttcggtgt gaggaagttc      2580
     ttccaatatc tctatggtcg gaaattcgtg ctgataaccg ataaccaggc gatttcgaag      2640
     attttcagcg agaataaggg cctgccagtg atgtctgcac ttcgtatgca gcattatgct      2700
     acatatctac aatccttcga ctacgaaata cgttttcgta agtcggcgga ccatgctaat      2760
     gctgatgccc tttctcgatt gccgatgcaa gctacggatc cggaaaacgt gattgaggag      2820
     tgcgacgtcg tagaaatcag ccaaattgat actttgccat tgaccgctgc tgaactttcg      2880
     gaagcgcagc tgcggataag tctgtgagca tgttgattca agggctcaaa catggacaga      2940
     acgttgacgg gaagcataga tttggaatcg accaatctga gttctcgttt caaaaaggat      3000
     gtctacttcg tggtattcgt gtctacattc cggcagtatt tcgcaagcgg gtgctagcgg      3060
     agctgcattc cacacatttt ggaacatccc gaaccaaatc actcgcaagg ggctactgtt      3120
     ggtggaacgg tatggataag gagatagaag agttgatcgc aaactgtgcg gattgccagt      3180
     cggttcggcc aatgccagct aaagtccaac cacatcattg ggaacctgct accaagccat      3240
     ttcaacgcgt ccatgcagac tttgctggac cgtatatgga ctgctacttc ttcatcctaa      3300
     tcgacgccta tactaaatgg ccggaaatca aggtttgtcg ttctattaca gcagaaaata      3360
     cggaagctat gtgtcgtgaa atattcagca cattcggtat tccgtcagtg ttcgttagtg      3420
     accatgaagt gcagtttacg gcaacatcgt tccagtcatt tctgaaacaa aatggcatcg      3480
     tacacaagat gggagctccg taccatccct ccacaaatgg acaagcggag cgttatgttc      3540
     aaacattcaa gcaaaagctg aaagccttaa aatgtccgcg gtcgcagttg aaccttgaat      3600
     tgtcgagact ccttttgacg tacaggaaga ccatacatcc agcgacaggc cagtctccat      3660
     ccatcatgat gtttggtcga caaatacgtt cacgtctgga cctgatgtta cccagaggga      3720
     acgaggaagc acctcctact acgacggttc gagagttgga aaacggtgtc cgtgttcgcg      3780
     taagagattt cctcaccaat aataaatggc aattcggaaa ggtagtttct aaacttggaa      3840
     gccttcgcta cgcggtgaag ctcgacgatg gaaggatctg ggaaagacac atcgatcaca      3900
     tcgtgaaggt cggcgtagga ttgttgtcgt caggaagcaa tgattctcca gcacgcgagc      3960
     ctcttcggga tgaacctaat tgttcaacat caacggtgcc gtccaccatt tctccatctt      4020
     cgcaagaaca ggagacagca gttgctgatc cggtggccat tgtcccgcca cccgatgatc      4080
     cagtgagtag agttccagag atgtcacaca gcagtgtatc accaaaaagt gaaacgaagc      4140
     cgcctttgcg gcgttctaca agaacgatta aagctcccca aaaacttaat ctttaatatt      4200
     ttttgcactg tatccatttt tgcatttttc acaaagggga gaga                       4244
//
ID   Gypsy-209_AA-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   AAGE02026967;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-209_AA_;
KW   Gypsy-209_AA-I; Gypsy-209_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026967; Positions    1858    2074.
XX
SQ   Sequence 217 BP; 61 A; 51 C; 36 G; 69 T; 0 other;
     tgttatacct tcattagcaa acctttaatt acattcacct tgaaatccaa atatgtgctt        60
     acctttataa ttacaatact ttggattgaa ctgtcataag taaatagacg agcggagagt       120
     acaaacgtgt tttaactcgt ccgaaataga aattccgcgt tccacgttct tgctgttcac       180
     cgtcgtctcg gccttgggat tccgccccgt tacaaca                                217
//
ID   Gypsy-20_AA-I repbase;    DNA;    INV; 4477 BP.
XX
AC   supercont1.196;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_AA_;
KW   Gypsy-20_AA-LTR; Gypsy-20_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4477
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.196; Positions  276258  271782.
XX
CC   Positions [1865-2293] - Reverse transcriptase
CC   Positions [3691-3948] - Integrase core
CC   'GTAGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           471..1622
FT                 /product="Gypsy-20_AA-I_2p"
FT                 /translation="MEKWEIQPFKFKALPRNIVRNEWIKYKRNFEYIIAAS
FT                 GETDKTRIKNLFLARAGPDLQEVFASIPGADVAEDKEEGVDPYAVAMQKLD
FT                 AYFSPKQHETFERNVFWTLKPNPEETLEKFMLRCQDQANKCNFGSTAMESK
FT                 AISVLILFAPSDLKEQLLHRDSLEIDEVAKIVGSYESVKHQARLMNFGQSG
FT                 LVEPVDMATAGNNINKIRNIPIKECMRCGKRDHFANDQNCPARGKECIKCR
FT                 RIGHFAARCRTPATKRRYTEEPKPASSKGFKRQRIHEIETDDERKDRRFIF
FT                 NINDGGEWLKLGGVTLQLLIDSGCKKNIINEKAWECMKNNGAKIWNQDKNC
FT                 TEVFLPYGKDAEPLCVLGKFDALISVEDDGRTIEQLVFINA"
FT   CDS           1655..3748
FT                 /product="Gypsy-20_AA-I_1p"
FT                 /translation="MSLGVLVIGLPSTHGVNMIGSAQKRPFPKIKGVQVEI
FT                 PVDNSVVPVCQHPRRPPFALLSKIEDKLTSLLISDIIEPVEEGYQWVSPLV
FT                 TVIKDNGDLRLCVDMRRANVAILRERHIMPTIEDFLPRFTSAKYFSRVDIK
FT                 EAFHQVELKGESRYITTFITHMGLFRYIRLMYGIVIAPEIFQRIMEQISSR
FT                 CEHTVNFIDDILVFGDTEEEHDAELKLVLSILNERGILLNQDKCLFKVTSL
FT                 DFLGHTVSSDGIKPSDSKIESLQRFRRPATTEEVRSFLGLVTYVGRFLPNL
FT                 ATVTAPLRELTRSGHKFSWGKDQESSFVKLKDMIGNVQQLYFFDNKLRTRL
FT                 VADASPVALGAVLIQFDGSTDVHPRPIAYASKSLTATERRYCQTEKEVLAL
FT                 VRSVERFAMYLYGRTFELETDHKPLEAIFQPTSRPCARVERWVLRLQSFSF
FT                 MVKYRSGSSNIADPLSRLVENRSSETFDAESKFMVLAVMESAAIDVQELED
FT                 ATNTDPVLEKVKKSMRSGNWDKEEVKPFLPFKNELGFVGDLLVRGDKLVVP
FT                 NKLKSRILDIAHEGHPGESLMKRRLCDRVWWPRMDSEAMMRVKSCEGCRLV
FT                 GLPSRPEPMNRRPLPSGPWIDTAMDFLGPLPCGSYLLVIIDYFSRYKEVEI
FT                 MSKITAKDTISKLDRIFTRLGYLRTITLDNAKQFVSTDLELYIKLHGIT"
XX
SQ   Sequence 4477 BP; 1360 A; 917 C; 1063 G; 1137 T; 0 other;
     ttggcgacga ggtaactgga caggtaagaa tgatgttttt taatacgaac gaatgaatac        60
     attgaattac atatttgagc tgtgctcttg caagctgcca gatttgaggt tatggctaca       120
     atgttttttt ttgttgaagg tggcgttgat ttgtttattt ccaacaactg tcgaagacaa       180
     aaaaaaaaaa aaattgtcgc tggaagcgat aggctactgg gtagctactg ctagaatagc       240
     agtggattgc atttcgtcgc tggaagcgat aagctacata gtagcggctg tgacagcgga       300
     ttaatcgtca ctaaatgtga taggctacaa tttagtagcg gctgtacagc ggatcataaa       360
     tcggatcaca acaaaactgt ctgttaagat aaaggaaaat atgacgaggt aaataaaaat       420
     taatgttatc gtcgatatcg ttttaggata caatcagaca aggttggatc atggaaaagt       480
     gggaaatcca accctttaaa ttcaaggctt taccacggaa tattgtccgt aatgagtgga       540
     ttaaatataa acggaacttt gagtacatta ttgcggcttc aggagaaacc gataaaactc       600
     gcatcaaaaa ccttttcctc gccagagctg ggccggacct tcaagaagtg ttcgcatcca       660
     ttccaggagc ggatgtggct gaagacaaag aagaaggtgt agatccgtat gcggtcgcta       720
     tgcaaaaact agacgcctat ttctctccaa aacagcatga gacatttgaa cgcaacgttt       780
     tctggacact caagccgaat cctgaagaga cacttgagaa atttatgttg cgttgtcagg       840
     atcaagcgaa taaatgcaat tttggaagca cggcaatgga aagcaaggca ataagtgtcc       900
     tcatcttatt cgccccgagt gatttgaagg aacaactgtt acatagagat tctctagaaa       960
     tcgacgaggt cgctaagatt gttggatcgt atgaatccgt gaaacaccaa gctcggttga      1020
     tgaattttgg gcagtctggg ctagtagaac ctgtcgacat ggccaccgcc ggaaataaca      1080
     ttaacaaaat ccgaaatatc ccgatcaaag aatgcatgag gtgcggaaaa cgagatcact      1140
     tcgccaacga ccaaaattgc cctgcacgag gcaaagagtg cattaaatgc aggcgaattg      1200
     gtcatttcgc agcacgttgt cgtacacctg ctacaaaaag aagatacact gaggaaccca      1260
     aaccagcctc tagcaaagga ttcaaacgtc agcgaataca tgaaatcgaa actgacgatg      1320
     aaagaaagga tcgccgcttc atatttaata ttaacgatgg aggagagtgg ctcaagcttg      1380
     gcggagtgac gctacaattg ctgatcgact ctggctgcaa gaaaaatatc attaatgaga      1440
     aagcgtggga gtgtatgaag aataatggag caaagatttg gaatcaagat aagaactgca      1500
     ccgaagtttt tcttccatac ggtaaagacg ctgaaccgtt gtgcgttctt ggaaagttcg      1560
     acgcccttat atctgtagaa gatgatggaa gaaccatcga acagctagta tttatcaatg      1620
     cttaatttac tcgagtttac ttaaaataac tgccatgagt ttgggtgtac tggtgatagg      1680
     attaccgagt acacatggag taaacatgat tgggtcagcc cagaaaagac catttcccaa      1740
     gattaaaggc gtccaagttg aaatcccggt ggataacagt gtcgttcccg tatgccaaca      1800
     tcctcgccgg ccaccgtttg cccttttatc taaaatagaa gacaaattaa catcactgct      1860
     tatcagtgat ataatcgaac ctgttgaaga aggatatcaa tgggtttcac cattggtgac      1920
     tgtgataaaa gataatggcg atctcaggct gtgtgttgac atgcgtcgag cgaacgttgc      1980
     aattttacgg gagcgccata ttatgcccac cattgaggat ttcctgccgc ggtttacatc      2040
     cgcaaagtac ttcagtcgcg tggatattaa agaggcattc caccaagtgg aattgaaggg      2100
     agagagtcgt tacattacga cgtttataac ccacatgggt ctctttcgat atataaggct      2160
     gatgtatggc attgttatcg cgcctgaaat attccaacgt atcatggagc agatttcgag      2220
     ccgctgtgag cataccgtca attttatcga cgacattctt gttttcggcg acacagagga      2280
     agagcacgat gcggagctca aactagtatt gtctattttg aatgaacgcg gaattctctt      2340
     gaaccaagac aaatgtttgt ttaaggtgac cagtctggac tttcttgggc atacggtttc      2400
     gtcagatggc ataaaacctt cggatagtaa aattgaatcg cttcagcgat tccgtaggcc      2460
     agcaaccact gaagaggtcc gaagtttcct cgggctggtt acgtatgtcg gtcggttcct      2520
     cccaaacctg gcgacagtta cggctcccct tcgcgagttg actcgttcgg gccataagtt      2580
     ttcgtggggc aaggatcaag agtcatcttt tgtgaaactt aaagacatga ttggcaacgt      2640
     tcaacaactg tactttttcg acaacaagct tcgaacaagg ctagttgcag acgcatcacc      2700
     agttgcgctt ggtgctgtct tgatccaatt cgacggttca actgatgttc atccgcgccc      2760
     gattgcctac gccagtaaaa gtttgacagc aaccgaacgt agatattgcc agaccgagaa      2820
     ggaagtgttg gccttggtaa ggtcagttga gaggtttgcg atgtacctgt atggcagaac      2880
     gttcgaattg gaaacggacc ataaaccatt agaagcgatt tttcaaccaa cttctcgtcc      2940
     ttgcgctaga gtggaaaggt gggtgctacg cctccaatcc ttttccttta tggtaaagta      3000
     ccgaagtgga tcatcaaaca tagccgaccc attgtctcgt ctggtcgaaa atcggtcttc      3060
     tgaaacattt gacgctgaaa gcaagttcat ggtgttggcg gttatggagt ctgcagcgat      3120
     tgatgtccaa gagcttgaag atgcaactaa caccgatccg gtcttggaaa aagttaaaaa      3180
     gagcatgcgt tccgggaact gggataaaga ggaagttaaa ccgtttttgc ctttcaaaaa      3240
     tgaactggga tttgttggcg atttgttagt acgtggagac aaacttgtcg tcccgaacaa      3300
     actgaagagt agaattcttg atattgctca tgaaggtcac ccgggtgagt ctctaatgaa      3360
     aagacggctt tgtgatcgtg tttggtggcc aaggatggat agtgaggcta tgatgcgcgt      3420
     aaaatcatgt gaaggttgtc gtttggttgg actgccgagt agacccgaac cgatgaatcg      3480
     ccgtccacta cccagcggac cgtggattga caccgccatg gatttcctag gtccgttgcc      3540
     ttgcggttcg tatctgttgg tgatcatcga ctattttagt cgttataaag aagtggaaat      3600
     tatgtctaaa atcactgcta aggatacaat aagtaagctc gacaggattt tcactcgctt      3660
     gggttacctt cgaactataa ccttggataa cgccaagcaa tttgtcagca cggatttgga      3720
     actctacatc aagctccatg ggatcacttg aatcactcga caccgtattg gccccaagaa      3780
     aatggtcttg ttgaaagaca aaaccgatct ctcgtaaaac gactacagat cagcgctgct      3840
     ctcggtagag actggaaaca agacttgcat gattatctaa tcatgtatta cactacgcca      3900
     cactcgacca ccggtaaaac accaactgaa cttatgtatg ggcacacaat tcgatcgaag      3960
     ctaccagcga tcgaagacat cgaaacaatt ccacaaaatg ctgattttcg tgatagagac      4020
     caagaattga aagaaaaagg gaagaaggca gaagatatcc gacgtcgagc taagcgatca      4080
     tcaattgatt caggagacac tgtactcatg cagaatttat taccaggaaa caagctatct      4140
     acaacctata atccaaagca atatatcgtt gtttcacggt ctggaccacg tgtgacggtg      4200
     gaagaccctc aaaacggaaa gtcgtacgac aggaatgtcg cacatctcaa aaaggttgtt      4260
     gagccagaac aagaactaaa cgaaacatct gacggctttc gttgtcagaa ccaggtgcag      4320
     ctagactcat cctctgaaga agactttcgt ggatttgagc ccgaggaaat cacgccatca      4380
     gaaacaatcg tagctagccg acagcgtaga tcaacgaaga agccgacgcg attcaacgat      4440
     tacctgatgt aacatccatc atttaaacaa agggaga                               4477
//
ID   Gypsy-20_AA-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   supercont1.196;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_AA_;
KW   Gypsy-20_AA-I; Gypsy-20_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-174
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.196; Positions  271781  271608.
XX
SQ   Sequence 174 BP; 60 A; 27 C; 38 G; 49 T; 0 other;
     tgtggtgccg agtacggccc tggtgaataa taaatacagt atactgttgt tgacaaagga        60
     gcgaagaacg gcaggtgccg tgaaagcaaa gtgaagaaat aataaacgtt ttctaaatca       120
     ttaaataagg ttttacgtat ttatattgtc caacacaaat cctcggtttt taca             174
//
ID   Gypsy-20_AnFu-I repbase;    DNA;    INV; 4808 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4808
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2905-2905 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..4663
FT                 /product="Gypsy-20_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEPDVGQLMEQVKLLTLNQQVLMNSITTLNTNYNDPL
FT                 LKLSIPDPVKHIAVFDGNKSLANAWLVDTEETLNLYESFVGQPIYAQIIRT
FT                 VKSKIKGEAKEVLVAAGNPNTWPEIKEAITTTYGNKRDLATHMYSLFYARQ
FT                 GKKSISEFYKNVKSIQTSMRTSAAMMDEYKDSLPAIGNLLDLLTLTRFIDG
FT                 LDCNLSMYVRSFKPKTLEDALEITEQYSNAAYRTKLETAKSSNGNNTNSSS
FT                 NFGKYKNYDQASGRYKSSKHAAERWKNTDNTHTASTKSKPSSDRDVSMKTQ
FT                 LSRMQINAHNGTHERYYKNQHAERCHQRDSSDDEQDCENADAVHEVNLSTI
FT                 SRNKLKRAVNSNNFIPYVSIHTTDGELKFLIDTGANKNYIAPENVCLDECK
FT                 DEEGLRVNNVNGEHNLNKSTSIDIFQIKKPLTFYVFKFHKFFNGIIGYESL
FT                 RDLRARLNIKENTLAVGRKTIKLKKYFSENYKLNLSEQKYQYIEIPRNSTG
FT                 SFLIEDEIACKNYTILPGLYSAVAGKAIVAIERTSNPFSADINFNEVEIGS
FT                 DYQTLSKLPEVECCDQYSLPTDHLNEEEKQAIHEVIRLNKEVLYFENNPLT
FT                 FTHKIKHKIRTTDNIPIHTKSYKYPQVYELEVQRQVKKMLEDEIIRESISP
FT                 YTSPVWIVPKKDDSLGNKQFRLVVDYRKLNEKTINDRYPIPEISEILDKLG
FT                 RTCYFSTIDLVSGFHQIQLAEEDIEKTAFSVTSGKYEFTRMPFGLKNAPAT
FT                 FQRVMDCILREEIGNCCFVYMDDIIIFSSSLQDHKRDLMKIFKKLSDANLK
FT                 IQLSKCNFFRKEVDFLGHTVTEDGVKPNSSKIDVIKNWPTPKTEKELRQFL
FT                 GTIGYYRKFIKDFAKLVKPLTALLRKDVEFEITPEITACFDKCKRLLTMEP
FT                 ILIYPDFSKDFILTTDASDFAIGAVLSQGTLQSDRPVAYASRTLNKTEEKY
FT                 STTEKELLAMVWAVKHFRPYLYGRHFKLVTDHQPLTYSLTNSNQRIVRGKL
FT                 VLEEYDYDLVYKPGRNNVIADALSRIRPNEANFNNQAPSSNSNSTSSVLVQ
FT                 IPNSYTTSDCETVHSADTSDDFFIPCTEKPINSFKTQIIIKIDDSVSFTSE
FT                 QMFPKYYRFTYCKPHYEEQDIINIFKNQLNPKVINCIKLPVSIIQLVQETY
FT                 KKLDIDKSFKIVISNTLLEDIQDEAEQDRIIRATHEEAHRGVNENKLQIYQ
FT                 HYFFPRLETKLKTFIQSCNKCKLSKYDRNPPKLIRKSFFGAAPFDRIHIDI
FT                 FFLKKTKWLTIVDSFSKFANTIPIQTRTIVDLKTAVTEHIRQFGRPSTIVC
FT                 DQEPSFTSIDFVGFLNDLGIEIHYASCSSSNGTVERFHSTLIELYRTLKDK
FT                 YRTFTLEQQINIITDIYNNTFHSVTKCKPRSIIFNTRNITNTEEIEENFEK
FT                 LRSVVQHRLNKNKEKYEHKYQHLEKPKKLIQNESVFIKSSQRLTKDRDPFK
FT                 LSRVKKDNELTFKDNYNIKIHKKRIKS"
XX
SQ   Sequence 4808 BP; 1813 A; 904 C; 888 G; 1203 T; 0 other;
     ggcgcagtcg acggttctca caagtgtaat ccgagcccac gcacgaggca tctgttgtcc        60
     cgagttttcg gtcgctgagc gtatatcagc cgatttgcgg caatagcagg atcgagtgag       120
     aaaaagaacc ttactaacgt tcaaagtgtc ggataaacgt gctaaagaat tcgacaggag       180
     gagaaatatg gagcccgacg taggacaatt aatggagcaa gtgaagttgc ttacattaaa       240
     ccagcaagtg ttgatgaaca gcataacgac attaaatact aattacaacg atccattgct       300
     gaagttgtct atccctgatc cggttaaaca cattgctgtt ttcgatggga ataaatcatt       360
     ggcaaacgca tggctcgtag atacagaaga gacacttaac ctctacgaaa gcttcgtcgg       420
     tcagcccatc tacgcacaaa tcatccgaac ggtgaagagt aaaataaaag gcgaagcaaa       480
     agaagtgctc gtagcagcgg gcaacccgaa cacatggccc gaaatcaaag aggcaatcac       540
     gaccacatat ggaaacaagc gcgatctagc gacgcacatg tattccttat tctatgctag       600
     acaaggaaaa aagtctatat cagagttcta taagaacgta aaatctattc aaacatccat       660
     gaggacatcg gccgctatga tggacgaata caaagattcg ttgccagcca taggtaactt       720
     gcttgacctg ctgacattaa cgaggtttat cgatgggttg gactgtaatt tatccatgta       780
     tgtgcgaagc ttcaaaccca aaacgctgga ggatgcgttg gagataaccg agcaatactc       840
     taatgctgct tatcgaacaa agctagaaac agctaaaagc agtaacggaa ataatacaaa       900
     cagcagttca aatttcggta aatataaaaa ttatgatcaa gcttctggac gctataaatc       960
     atcaaagcac gccgccgaaa gatggaaaaa tacagataac acgcatacag cctcaacaaa      1020
     atcaaagcca tcatccgata gggatgtttc gatgaagacg caactttcta ggatgcagat      1080
     aaacgcacac aacggaacgc atgaaaggta ctacaagaac caacacgctg aaaggtgcca      1140
     tcagcgtgac agcagcgacg atgaacaaga ctgcgaaaat gcggatgctg tgcatgaggt      1200
     aaacttatct actatttcaa gaaacaagtt aaagcgggca gtgaatagca ataatttcat      1260
     accatacgta tcaattcaca ctacggacgg cgaactaaaa ttcttaattg acaccggagc      1320
     aaataagaat tacattgcac ccgaaaacgt ttgtttagat gagtgtaaag acgaagaggg      1380
     attacgcgtg aacaacgtta atggcgaaca taatctaaac aaatccactt caattgatat      1440
     atttcaaatt aagaaacctt taacttttta cgtatttaaa ttccataaat ttttcaatgg      1500
     cattatcggt tacgaaagcc taagagattt gagagctcga ctaaacatta aagaaaacac      1560
     cttggcggta ggtagaaaaa caattaaatt gaaaaagtat ttttcagaga attacaaatt      1620
     aaatttaagc gaacaaaaat atcaatatat tgagataccc aggaattcta ccggttcgtt      1680
     tttgatcgaa gacgaaatag catgtaaaaa ttacacaata ttacctggcc tatattcagc      1740
     cgtagctgga aaagcgatcg tagctatcga aagaacgagt aatccgtttt cagctgatat      1800
     aaatttcaat gaagtagaaa taggatcgga ttatcaaact ttaagtaaac tacccgaagt      1860
     ggagtgttgc gaccaatatt ccctaccaac agatcatttg aatgaagaag aaaagcaagc      1920
     catacacgag gtgatcaggt taaacaagga agttttatat tttgaaaaca acccgcttac      1980
     gtttacacac aaaattaagc acaaaataag aactacagat aatataccca ttcatacgaa      2040
     atcgtataaa tatccacaag tttacgagct tgaagtacag cgacaggtta aaaagatgtt      2100
     agaagatgaa ataatcagag aatctatatc gccgtacact tcccccgtgt ggatagttcc      2160
     gaaaaaggac gattcattag gaaacaaaca atttcggttg gtagtagatt accgaaaatt      2220
     gaacgaaaaa accattaatg atagatatcc aattcccgaa atatctgaaa tactagataa      2280
     actaggaaga acttgttact tttcgaccat cgatttagtt tcgggatttc accagatcca      2340
     gttagcggag gaagatatcg agaaaactgc gttttcagta acatcaggga aatatgaatt      2400
     cacacgcatg ccgttcggtt taaaaaacgc gccagcaact ttccaacgcg taatggactg      2460
     tattcttagg gaggaaatag gaaattgctg ttttgtctac atggatgaca ttattatatt      2520
     ttcaagttca ttgcaagatc acaaaaggga tttaatgaaa atatttaaaa aactcagcga      2580
     tgcgaacttg aaaatccaat taagtaaatg caacttcttt cgcaaggaag tagatttttt      2640
     gggtcataca gttacagaag acggtgttaa acctaatagt agtaaaattg atgttataaa      2700
     aaactggcca acccctaaaa cagaaaaaga attacgtcag ttcctcggta ctataggata      2760
     ttacaggaaa ttcattaagg actttgcaaa attagttaag ccgttaacag cattattacg      2820
     aaaagacgtt gaattcgaaa taacaccaga gataactgca tgtttcgaca aatgtaaacg      2880
     attgttaaca atggaaccaa tacttattta tcccgatttt tctaaggatt tcatacttac      2940
     aaccgacgca agcgatttcg caataggagc tgtcctatcg caaggtactt tgcaaagtga      3000
     taggcccgtc gcatacgcat ctcgcacact aaataagaca gaggagaaat attctaccac      3060
     cgagaaagaa ttgcttgcga tggtttgggc tgtaaagcat tttcggccgt acctttatgg      3120
     aaggcatttc aaacttgtga ccgatcacca accattaacc tactcactta cgaattcaaa      3180
     ccagagaata gttaggggaa agttagtatt agaggaatac gattacgatt tggtatataa      3240
     accaggaaga aacaacgtca tcgcagacgc attatcgaga ataaggccga atgaagcgaa      3300
     tttcaacaat caagcaccaa gttcaaatag taatagtaca agctcagttt tagtgcaaat      3360
     cccgaactct tatacgacaa gcgattgtga aactgtacat tccgcagata ctagtgatga      3420
     ctttttcatt ccttgtacag aaaaaccaat caattcattt aaaacgcaaa taattattaa      3480
     aatagatgat tcagtcagct tcacctccga gcaaatgttt cctaagtatt acaggttcac      3540
     ttattgcaaa ccacattatg aagaacagga tataattaac atatttaaga accaactaaa      3600
     tcctaaagtg atcaattgta tcaaattacc tgtctctata atacaattag ttcaggaaac      3660
     atataaaaag ttagacattg ataaatcatt caaaatagtt atttctaaca cattattgga      3720
     agatattcaa gacgaggcag agcaagatag aatcatacgc gcgacacacg aggaagcaca      3780
     taggggagtt aacgaaaaca aattacaaat ttatcaacat tattttttcc ctcgcctaga      3840
     aaccaagctc aagaccttta tccaatcctg caacaaatgc aaactaagca aatacgaccg      3900
     aaatccacct aaactcattc ggaaaagttt ttttggcgcg gcaccatttg ataggattca      3960
     catagatatt ttctttctga agaaaacaaa atggctaacg attgtcgact cattttcgaa      4020
     atttgcaaat acaatcccaa tacagacaag aacaatagta gatttaaaaa cagctgttac      4080
     agagcatatt cgccaattcg gacgtccatc gacaatcgta tgcgatcaag agccgtcatt      4140
     tacatcaatt gattttgtcg gatttctaaa tgacttaggc atagaaattc actacgcgag      4200
     ctgttcaagt tctaacggaa cagtggaaag gttccactca acattaatcg aactataccg      4260
     tactttaaaa gataaataca ggacttttac tctagaacaa caaatcaata taataacaga      4320
     tatttacaac aatactttcc attcggtaac aaaatgtaaa cctcgttcaa taatatttaa      4380
     tacgcgtaat ataacgaata ccgaggagat tgaagaaaat tttgaaaaat tacgaagcgt      4440
     ggtacaacat aggctaaata agaacaaaga gaaatacgag cataaatacc agcatttaga      4500
     aaaacccaag aaactcattc aaaatgaatc cgtattcata aaatcatcgc aaagactcac      4560
     aaaggatcgt gatccgttta aactatctag agtaaaaaag gataatgaat taacatttaa      4620
     agataattac aatataaaaa tacacaagaa aagaattaag agctgaataa caaagaaaat      4680
     aacttaaaat taacggaaac gagaaccgaa aagatgctaa gcgtgatacg aattgcatca      4740
     aagaccgata aattgcattg gattcataaa ttacaggccg aggacgtcct ttttctaccc      4800
     cggggagg                                                               4808
//
ID   Gypsy-20_AnFu-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-221
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2833-2833 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 221 BP; 78 A; 31 C; 45 G; 67 T; 0 other;
     agttaggtag gaatacgaaa cgatcgatgt aagttaagtt agtatacgta agattagatt        60
     taatagaaat tattataata ttcgtgagat acaacgtatc tcacgaaact attaaatgta       120
     taggtagtag taagtaaaac tgccacgcgt cccgtctggc tacagcacta gacgcgtagg       180
     ttagtctcgt tttgtaagct ggaataaaca ctattataat t                           221
//
ID   Gypsy-20_AnMe-I repbase;    DNA;    INV; 4458 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4458
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6832-6832 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..4377
FT                 /product="Gypsy-20_AnMe-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MPSKEDMLCALENAKVPVPPTATIAQIRMLYEELFPR
FT                 SRVVAEQKLAPVVTHESVDTGNLAIKQTNDEQEIVKTANTGGLETELETLQ
FT                 KELQVLELRQKIAMLKSSNIASTSLPSSSSPPPLPLPTAQPVPPSLTSSPP
FT                 LPLPLPTALPVYVPNFEDFIGKFSGERGGVGVEHWFREFEQVCSLYTLNDQ
FT                 LKFFCMRRLLSDTAAIFAKTSGACTYETLKADLISTFTSKTSLEEVFQKLR
FT                 ARHLSQHESITRYVLEMQQIAGTVIPEEDLVNIIIDGIDDPINTSSIRFAA
FT                 KSLEHLKILLKKYDTFRQTRGVTPTPAPLRTKTPAPPRSTGPSRQWAQNNN
FT                 NEPARCFNCSQFGHYQSACPMPRRPKGSCFKCHQMGHTHRECRNFQPVTTA
FT                 AVHHLGSHGFDEETADQILLSEIETVCVSFNIQHKWSEQTFLRSLFDTGSP
FT                 VSLIADNVVPSNFLHQPTPSGYRGLGNTMLTSLGRVECRIIIRNISVKHSL
FT                 IILPARSMPWPFIIGRDLLGKFRIFLTHYPSMIPLHYAPKPESNSNFEKIP
FT                 KPIKSLDVGDPFSHICVSEIFDSPLELDIGKQLSPKESAAILSAFDHCYTN
FT                 YPIESIEYPQYSMKINLVHDTPIYAKPRRLSYGERNQVRQIVNQLLNDKVI
FT                 QPSNSPYASPLVLVRKKSGEVRMCVDYRPLNKITVRDNFPLPLIETCLEHL
FT                 SGKSVFSLLDLKSGFHQVKMDESSIKYTSFVTPDGQYEYLKMPFGLKNAPA
FT                 EFQRFINSILREFIDSEKLVVYLDDIIIASNDFHTHLETLSSVLEKLKQNG
FT                 LELRIDKCKFAHTNLEYLGYEACASGIRPSGKHLTSIYNFPMPTNVKQLRR
FT                 CLGLFSYFRRFVPSFSHIAKPLTNLLQKDMPFDFDNSCIQAFQTLRQKLVQ
FT                 SPVLAIFNPRHETELHCDASSFGFGAVLFQKQNDGKLHPIAYFSKTTSKEE
FT                 SKLHSYELETLSVIYALKRFHSYVHGLPLKIITDCNSLVQTLKNRNASAKI
FT                 ARWSLFLENYDYTIQHRSGSSMAHVDALSRTEAIGAISELDIDFQLQLAQS
FT                 RDPTIESIKSQLELENLPGYVLQDGFVYHESSSKELQFYVPREMVDNIIRH
FT                 THEKIGHLSVDKTISKISCHYWFPSMRNRVESFIKNCLKCIIYSAPTRTNN
FT                 QNIHSIPKAPQPFDTLHIDHLGPLPLTKSKKKYILVVIDAFTKFTKLYATR
FT                 STGSQEVCNALKQYISYYSRPKRIISDRGTCFTSNQFENFLKSNEVQHVLN
FT                 ATGSPQANGQVERVNRVLRPILSKLSDSYDHDDWNLHLLDAEYALNNSEHA
FT                 STKFSPSVLLFGIEQRGHLIDELTEFLDERRGSTRNNLSDIRAEASANIIK
FT                 SQLTNEAYFRKNHKPAAKYEVGDYVVMRNIDSSTQQNKKLIPKYKGPYIVH
FT                 KVLPNDRYVIRDIEGCPITQMPYDGVLESNKLKKWSEP"
XX
SQ   Sequence 4458 BP; 1379 A; 991 C; 864 G; 1224 T; 0 other;
     tctcagaagt gggattgtgc catgccgtct aaagaagata tgttgtgtgc gctggaaaac        60
     gcgaaagtgc cggtgcctcc aaccgctacg attgctcaaa tccgcatgtt gtacgaggag       120
     ctatttccta gaagtcgcgt ggtagccgaa caaaagcttg cgcccgtagt aacgcatgaa       180
     agtgttgata ccgggaattt ggcgataaag caaacgaatg acgagcaaga aattgtcaag       240
     acagctaata ctggcgggtt agagacggaa ttagaaacac tgcagaagga gttgcaagtg       300
     cttgaacttc gtcagaaaat cgctatgctg aagtcatcta acatcgcttc gacttcgcta       360
     ccatcatcat catcaccacc accactgcct ttacctacag cgcagccagt accgccatct       420
     ttaacatcgt caccaccgct ccctttgccg ttacctacag cgctgccagt gtatgtaccc       480
     aactttgaag acttcatagg aaaattcagt ggtgaaagag gaggagtagg ggtggagcac       540
     tggtttcgag aatttgaaca agtatgtagc ttgtacacac taaacgacca gctgaaattt       600
     ttctgtatgc gccgcctgct ctccgacacc gcagccattt ttgctaaaac ctcaggcgca       660
     tgcacctatg agacactgaa agctgacctt attagtactt tcacatcaaa aacatcatta       720
     gaagaagtgt ttcaaaaact aagggcacga catctctcgc aacatgaaag cataacaagg       780
     tatgtgttgg aaatgcagca aatagcaggc accgtaattc cagaggaaga cttggtcaat       840
     attataattg acggaatcga tgatcctatt aatacgtcat ccatacgttt cgctgcaaaa       900
     tcactcgagc acctcaaaat cctgctgaaa aaatacgaca cttttcgcca aactcgtggc       960
     gtgactccta caccagcacc gttacgcact aaaaccccag ccccaccccg cagcactggc      1020
     ccctcgcgtc aatgggcgca gaacaacaat aatgaaccgg ccagatgctt taactgttct      1080
     caattcggcc attatcaaag tgcttgccca atgccacgcc gccccaaggg atcctgtttt      1140
     aaatgccacc aaatgggaca tacacatcga gagtgccgaa acttccagcc cgttacgact      1200
     gctgcggtgc accatctggg ttcccatgga tttgatgaag aaactgctga ccaaatactg      1260
     cttagcgaaa ttgaaacggt atgtgttagt tttaatatcc aacataaatg gagcgaacaa      1320
     acgtttttac gatcactttt tgatacaggc agccctgtaa gcctaatagc tgacaatgta      1380
     gtaccaagta actttctgca tcaacctacc ccttctgggt accgaggatt aggaaatact      1440
     atgctcacgt ctttaggtcg agtggagtgc aggatcataa ttcgtaatat tagtgtgaaa      1500
     cactcgctta tcattttacc agctagaagt atgccttggc cattcataat aggtcgtgac      1560
     cttttaggaa aatttagaat atttcttaca cattatccaa gtatgattcc cttacattat      1620
     gctcccaaac cggaaagtaa ttcaaatttc gaaaagatac caaaacctat taagtccctt      1680
     gatgtaggtg atccgtttag ccacatttgt gtgtcggaga tatttgacag cccccttgaa      1740
     ttagatatcg ggaagcaact ttcgcctaaa gagtctgcag ccattttgtc cgcatttgat      1800
     cattgctaca ctaactatcc tattgagagt atagaatatc ctcagtattc catgaaaatt      1860
     aatctcgttc atgatacccc catttatgca aagccacgta gactttccta tggggagagg      1920
     aatcaagtgc gacagattgt aaatcaatta ttaaatgata aagtcattca accaagcaat      1980
     tctccatacg cttctcccct tgtgctagtt agaaaaaaaa gtggtgaagt gcgtatgtgc      2040
     gttgattaca gacccctgaa taaaataaca gtaagggata attttccatt gccgttaatt      2100
     gagacatgcc ttgaacacct gagtggcaaa agtgtattta gtttgcttga tttaaaaagc      2160
     ggtttccatc aggtaaagat ggatgaaagc tcaattaagt acacctcctt cgtaacacct      2220
     gatgggcaat atgaatattt aaagatgcct tttgggctta aaaatgcccc cgcggaattt      2280
     cagagattca taaattcaat attacgcgaa tttatagatt ccgagaaatt agttgtctac      2340
     ttggacgaca tcataatagc atctaatgac tttcatactc atcttgagac gttgagttct      2400
     gttctcgaga aacttaaaca aaatggactt gaactgcgca ttgataaatg caaattcgcc      2460
     cacactaatt tggaatatct tggatacgaa gcctgtgcct ctggtatacg acctagtgga      2520
     aaacacctca catcaatata taactttcct atgcccacta atgtcaaaca gctaagaaga      2580
     tgtttagggc tcttttctta cttccgtagg ttcgttccat cattttctca tatagctaaa      2640
     cctcttacaa atcttcttca gaaagatatg ccatttgatt ttgataattc ttgcatccaa      2700
     gcatttcaaa cccttcgtca aaaacttgtt cagtctcctg tcttggctat atttaatccc      2760
     agacatgaga cggagctgca ttgcgacgcg agctcattcg gttttggtgc agtcttattc      2820
     caaaaacaga atgatgggaa acttcaccca attgcatatt tttctaaaac tacctcaaaa      2880
     gaagaatcaa aacttcatag ctacgaattg gaaactctat ccgtaatata tgcgttgaaa      2940
     aggttccact cgtacgtcca tggattaccc ttaaagataa tcacggattg caattctctt      3000
     gtacaaacgc tgaaaaatcg taacgcctct gcgaagattg cccggtggtc cttgttcctc      3060
     gagaattatg attatactat tcagcatcgc tcaggttcct ctatggccca cgtggatgct      3120
     ctgagccgga ctgaagcaat tggtgctata agtgaacttg atattgactt ccaactacag      3180
     ctagcccaat ctcgtgatcc tactattgaa agcattaagt cccaactaga actggaaaat      3240
     ttacctggat atgttttgca agatggtttc gtatatcatg agtcatcctc aaaagagctt      3300
     cagttttatg tcccccgcga gatggtagat aatatcatcc gccacacaca tgagaaaata      3360
     ggtcacttat ccgttgacaa aacaatttca aaaattagct gtcactattg gtttccttct      3420
     atgcgcaata gagttgagtc tttcatcaag aattgtttga aatgtataat atattcagct      3480
     cccactagaa ctaataatca gaacatccac agtataccga aagctcccca accttttgac      3540
     acacttcaca ttgatcacct tggaccacta cctcttacga aatccaaaaa gaagtatata      3600
     ttagttgtga tagacgcatt tacgaaattt actaagctat acgcgactcg ttccactgga      3660
     agccaggaag tatgcaatgc tctcaaacaa tacatttcct attacagccg acccaaacgg      3720
     ataattagtg accgaggtac ctgcttcacg tccaaccagt tcgaaaattt ccttaaatca      3780
     aatgaggtac agcatgtact caacgctact ggttcaccac aagcaaacgg acaagtcgaa      3840
     agggttaacc gcgtacttcg acccatcctc agcaaacttt cggactctta tgatcatgat      3900
     gattggaatt tgcatttact ggatgctgaa tatgcgttga ataattcaga gcacgccagt      3960
     acgaagtttt caccctcagt tctcctgttt ggtattgaac aacggggtca tttaattgat      4020
     gaactaacgg agtttttaga cgagcgtcgt ggaagtacac gaaataattt aagcgacatt      4080
     cgggctgaag catcggcaaa tataattaaa tctcagctta ccaatgaggc atattttcgt      4140
     aaaaatcata aaccagcagc taaatatgaa gttggagatt atgtagtaat gcggaacatt      4200
     gatagcagca ctcagcagaa taagaagttg attcctaaat ataaaggtcc gtacatagtc      4260
     cataaagtat tgcctaacga tcgctatgtc attagggaca ttgagggctg tccaataact      4320
     cagatgccat atgatggcgt attagaatcc aacaagttga agaaatggag tgagccgtaa      4380
     gaaaccgttg aggaaatttg aattactaat atatttacac ataaattgag gtcaatttaa      4440
     gtgtcaggat agccgagc                                                    4458
//
ID   Gypsy-20_AnMe-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-266
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6857-6857 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 266 BP; 78 A; 54 C; 50 G; 84 T; 0 other;
     tgtagacatc tggtagataa taaatacctt ttatctgtaa gcaccttgca ttatgcaaga        60
     accatatttg taagcacctt gtatgtgcaa acaccttcta ttttgtaagc accttgaagt       120
     tgtatgtgaa ttataagaat cgtggtaata aaatccgtgc cggaacggcc ttctgaagcc       180
     atccgccgaa cgaactggac gtttcggact tctgccttag gtcttccgtc ttccgaaata       240
     aataactata tttgtaagcg tttaaa                                            266
//
ID   Gypsy-20_AnSt-I repbase;    DNA;    INV; 5300 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 803-803 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           461..1630
FT                 /product="Gypsy-20_AnSt-I_1p"
FT                 /translation="MWRNPKEIASDSEQESESTASSDLTHIPIRCEVPLQD
FT                 LHIHTMEPSISNQGNGENSMRDAVLENLQTQILHLSSTLQHLVETQQQDNS
FT                 ASVMQNRFDQAQTLEAFYRIPDPIKIIPHFDGNKKQLFSWIQTAENALNLF
FT                 KNRIDPLLYEVYVDAVKTKIIGKARDILSSEGNPTNFEEIKNVLTKALGDR
FT                 KDLSFYMSRLWLNKMGSRSITEYYTHTKELIQKVKVIAKQNEKYKLSWEAI
FT                 DAFINETSLAAFVTGLNEQYYGYVQAAQLLDLESTYAFLCKFESFPPVNKY
FT                 NHRQHNEYNNNGNTNRMQNSYKKQGKGPYNSENPHSSKTFPNSQTPSAMDA
FT                 ETTKTRLTVNRNEFNNNEAFHYQQHDEDENQTFLVNFWEATTTHPPN"
FT   CDS           1570..5037
FT                 /product="Gypsy-20_AnSt-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="GRESNIFGKFLGGNYNTSSKLDYLPYIVCVNSMSKKE
FT                 LKLLIDTGSNKNLIKKGIIPSVELCEATTIKNIGGDYCINTKGTINLLGHG
FT                 LPSQMYYEINFHNFFDGILGSEYLAKNCAVIDYGTETLTINAVSLPFRKYF
FT                 PTQKMFHHTITINTLTNGDWFVPSYQTLCKNAIIQPGLYHAKDYQSTVLII
FT                 SPCSTLSLNEKVFGVTVNNFETITPIPLKNSEKLDEQMILKLIQTEHLSQL
FT                 EKDHLVKAIIDNQQVLLKENEKLSSTAIIKHKIITKDNEPTYTKSYRFPNH
FT                 YKKDVETQIKEMLEDGIIKHSKSPYSSPIWVVPKKIDSSGKRKVRVVIDYR
FT                 KLNEKTVNDRYPIPQIEEILDNLGNSVYFSTLDLKSGFHQIQMDPEYQEKT
FT                 AFSTAQGHFEFTRMPFGLKNAPATFQRVMNHILSGLIGTVCFVYLDDIIVI
FT                 GNNLTSHINNLTTVLERLSSFNLKIQLEKCKFLKRETEFLGHIITAEGVKP
FT                 NPDLIKKIVDWKIPKSQKELKQFLGLTGYYRKFIRDYAAISKPLTKCLKKD
FT                 AKVDNENESYIKAFKDLKTIISSDQVLAYPNFELPFILTTDASNHALGAVL
FT                 SQMQENNERPIAFGSRTLNKTEVNYSTTEKEALAIIWAVRKYKPYLYGNKF
FT                 TLITDHKPLTFIKTSFKNSKILNWRLELEDFEYDVKYKEGKGNVVADALSR
FT                 IPEVNVNETKKASHSRPDTRKNLIDSCSTVHSADDSGDYFVHITQRPINYY
FT                 RNQLILKISDRDDIQKETPFPHFNRTTVLKKKFVIDDVVRHIDKIHNGKQT
FT                 AIFAPTELQQVVQNAIKDNFSIRGHFVMTTKAVEDVPDTDRQNFIVLTEHN
FT                 RAHRGIAEVENKLRRNYFFPGMQKIIKNFINSCEICMTEKYERRPYKLQIS
FT                 PRPVTFKPMERVHMDIYIINNCSFLSIVDSFSKHLQMLFIRHKNMAQVQQK
FT                 LTKYFALYGVPKEIITDHETTFRSVQLRNYLASLGVALKYASCSETNGQVE
FT                 KTHSTITEIYNSNKHKYTGYDTKSMVRISVALYNDSIHSATKFTPNELTFN
FT                 QCDKRNEIDILRNANELFREAKQNLEKATKRQTAKNDSKMPPPNLEENQDV
FT                 FIIPNIRTKTQARACKAKACKIENRTFENVRGIKRHKGKIKRIKMNYK"
XX
SQ   Sequence 5300 BP; 1995 A; 973 C; 930 G; 1402 T; 0 other;
     ggcgcagccg gtagtagtta gaatagttag aaaaaaaaac agtgctagtg agttatcaat        60
     aaagcttgca tagtgtgtcc ggacttgtac ccactactag atagaggtac attttcatct       120
     ccgtgtgaca tttacaacac gggtgatttg tgacaacgcc gtttcgaact ttccagctac       180
     taagaaccag cttcattcct cgcttacaac agcagagatt tgaggttagg attctcgcgt       240
     acatacacgc tgcacaggta agcaaacttt cggtttttgt tctcttggtg ttacgcacac       300
     atatccgtgt atagtagcag aggaaaaaaa catttgcttc gtgcctcgtg gtagatactg       360
     tcaaacagat ctatccgagt tcataattag gttgctctag aggcgcttaa ttttggaaag       420
     agaaacgtac tattagatag acgttactct aaatagtttt atgtggagga atccgaaaga       480
     aatagcatct gattcggaac aagaatctga atccacagca tctagcgatc ttacgcatat       540
     tcccatacgc tgtgaagtcc cgttacaaga tttgcacatt cacacaatgg aacctagtat       600
     tagtaaccag ggcaatggtg aaaatagtat gcgtgacgca gtccttgaaa atttgcaaac       660
     gcaaatttta catctatcat caacactaca acatctagtt gagacacaac agcaagacaa       720
     ttcggctagt gtgatgcaaa accggtttga ccaagcgcaa accctagagg cattttatcg       780
     tattcctgat ccgataaaaa taattcctca ttttgacgga aacaaaaaac aattattttc       840
     atggatacag acagcagaaa atgctctgaa cttatttaaa aatagaattg atccgctctt       900
     gtatgaagtt tacgtggatg cagtaaaaac taaaataata ggaaaggcaa gagatattct       960
     tagctcggag ggcaatccca caaattttga ggaaataaaa aatgttctaa ccaaagcgct      1020
     aggtgatcgt aaagatcttt ctttttatat gagtagactt tggctgaata agatgggtag      1080
     tagaagcatc actgagtact acactcatac taaagaactt atacagaagg ttaaagtaat      1140
     tgccaaacaa aacgaaaagt ataaactcag ttgggaagcc atcgatgcgt ttattaacga      1200
     aaccagccta gcagcgttcg tcactggttt aaacgaacaa tattacgggt acgtccaggc      1260
     agcccagctt cttgatttgg agagcactta tgcttttctt tgtaaatttg aatctttccc      1320
     tcccgtaaac aagtataacc atcgccaaca taacgaatat aataacaacg gaaatacaaa      1380
     cagaatgcag aacagttata aaaaacaagg gaaaggacca tacaattccg aaaatccgca      1440
     ttcatccaaa acatttccta attctcaaac accaagtgca atggatgcgg aaacaactaa      1500
     aacgagatta acagtgaaca ggaatgagtt taataacaat gaagcatttc attaccaaca      1560
     acacgatgag gacgagaatc aaacattttt ggtaaatttt tgggaggcaa ctacaacaca      1620
     tcctccaaat tagattatct tccttacatt gtgtgtgtga atagcatgtc caaaaaagag      1680
     ttgaaattgt tgatcgatac aggttcaaac aaaaatctga taaaaaaagg aatcattcca      1740
     tccgttgaat tgtgcgaagc aacaacaata aaaaatattg ggggtgatta ttgtatcaac      1800
     acaaaaggga caattaattt gctaggacat gggttaccaa gccaaatgta ctacgaaata      1860
     aattttcaca atttttttga tggtatctta ggttcagagt atttggcaaa gaattgtgca      1920
     gttatagatt atggtacgga aacactcaca attaatgcag tttcactccc ttttaggaaa      1980
     tactttccaa cacaaaaaat gtttcatcat acaattacta taaacacgtt aacaaatggc      2040
     gattggtttg taccaagcta ccaaacactt tgtaaaaacg ctataattca accaggactg      2100
     taccatgcaa aagactacca atcaactgta cttatcatta gcccttgtag tacattgtca      2160
     ctgaacgaga aggtattcgg tgtaactgta aacaatttcg aaacgataac cccgattcca      2220
     ttaaaaaaca gtgaaaaact tgatgagcaa atgattctta aactcattca aacagaacat      2280
     ctttcacaat tagaaaaaga ccatcttgta aaagcaataa tcgacaatca acaagtcctc      2340
     ttaaaagaaa acgaaaagtt atcttccacc gctattataa aacacaaaat aattacaaag      2400
     gataatgagc ccacctatac aaagtcctat aggtttccga accactataa aaaagatgtt      2460
     gagacccaaa ttaaagaaat gcttgaagat ggcattatta aacactccaa aagcccatac      2520
     tcctccccaa tttgggtagt acccaaaaaa atagattctt cgggcaaaag gaaggtgagg      2580
     gtggtgatcg attatcgtaa gctcaatgag aaaacggtaa acgatagata tcctatacct      2640
     caaatagagg agatcctgga taacttagga aattcggtct atttctctac tctggacctc      2700
     aagtctggat ttcaccagat acaaatggat ccagagtatc aagagaaaac ggcgttttct      2760
     actgctcaag gtcattttga gtttaccaga atgcctttcg gcttgaaaaa cgctccagcc      2820
     acctttcaac gcgtcatgaa tcatattcta tccggtttaa ttggtactgt ttgtttcgta      2880
     tatttggatg acataattgt cattggaaac aatttaacat cacacataaa caatcttact      2940
     accgttctgg aacgtttatc aagcttcaat cttaaaattc agctggaaaa atgtaaattt      3000
     cttaaaagag aaactgaatt tttagggcac ataataaccg cagaaggtgt aaagcctaat      3060
     ccagacttaa tcaaaaaaat agttgattgg aaaattccaa aaagtcaaaa agaactaaaa      3120
     caattcctag gattgactgg gtactatcga aagtttatac gagattacgc cgcaatatca      3180
     aaacctttaa cgaaatgcct aaagaaagac gctaaggtag ataatgaaaa tgaaagttac      3240
     ataaaagcat ttaaagattt gaaaacaatt atttcatcag atcaggtact agcttatcct      3300
     aatttcgaac tgcccttcat tctcacaacc gatgcaagta accatgcgtt aggtgccgtc      3360
     ttatcacaaa tgcaggaaaa taacgaaaga ccaattgcat ttggcagtag aaccttaaat      3420
     aaaacggaag tcaattattc gacaacggag aaagaagctt tagccattat atgggccgtg      3480
     aggaaataca aaccatattt gtatgggaat aaattcaccc taataaccga ccacaagccc      3540
     ttaacgttta ttaaaacttc attcaaaaat tcaaagattt taaactggag actggagcta      3600
     gaagactttg aatatgatgt aaaatacaaa gaaggcaaag gaaatgtagt agctgacgct      3660
     ttaagtcgaa tacctgaagt aaatgtaaat gaaacaaaaa aggcttcaca tagtcgacct      3720
     gacacacgaa aaaacttaat cgatagctgc tctactgtgc attctgcaga cgattctggc      3780
     gactatttcg ttcatataac gcagaggcct ataaactatt acagaaatca gttaatactt      3840
     aaaatatctg acagggatga tatccaaaag gaaactccat ttcctcattt taacagaacg      3900
     acagttctga aaaaaaagtt tgtaatcgat gatgttgttc ggcatataga taaaattcat      3960
     aatggaaagc agacagcgat ttttgcacca acagagttgc aacaagtggt tcaaaacgca      4020
     attaaagaca atttttcgat cagaggacac ttcgtaatga caacgaaagc agtagaagat      4080
     gtacccgata cagacagaca aaatttcata gtgttaacag aacacaacag agctcatcga      4140
     ggaatagcag aagttgagaa caaattaaga cgcaactatt tttttccggg catgcaaaaa      4200
     attataaaaa atttcattaa cagttgtgaa atttgtatga cagagaaata cgaacgaaga      4260
     ccatacaaac tacagatatc gccacgacca gtcactttca aaccgatgga gcgagtacat      4320
     atggatatct acatcattaa caactgtagt ttcctatcta ttgtagattc gttttccaaa      4380
     catctccaga tgcttttcat aagacacaaa aatatggcac aagttcaaca aaaacttacg      4440
     aaatactttg cgctttatgg agttcctaaa gaaataataa ccgaccatga aactactttt      4500
     aggtcagtac agctacggaa ttatttagca tcattaggag ttgcattaaa atatgcgtcg      4560
     tgttcagaaa caaatgggca ggtggagaaa actcacagta ccataacaga aatttataat      4620
     tctaacaaac ataagtacac aggatacgac acaaaatcta tggtcagaat atcagtagca      4680
     ctatacaatg actcaattca ttcggcaaca aaatttactc caaacgaatt aacgtttaac      4740
     cagtgtgaca agagaaatga aatagacata cttcgaaatg caaatgaact atttagagaa      4800
     gcaaaacaaa atttagaaaa agctacaaaa agacaaacgg caaagaacga ttcaaaaatg      4860
     cctcctccaa atctagaaga aaatcaggac gttttcataa ttcctaatat acgtactaag      4920
     acacaggcga gagcatgtaa agcaaaagca tgcaaaatag aaaatagaac tttcgaaaat      4980
     gtcaggggaa ttaaacgaca taaaggaaaa attaaaagaa ttaaaatgaa ttataaatga      5040
     aatacttagc atgttagttt aggattttct ttcaaatttt aggcccctaa aattttgaaa      5100
     cgaatacttt agggtttgcc ttagtaacgg acacctttcc ttaataattt ttaatggtaa      5160
     ttaatggttc aggtatttgc ttaggtagga aatagataga tataagatta attattataa      5220
     cgttttcgaa aaaataagta ttcctcataa aaccaatacg tataacgagc cgaggacgcc      5280
     tcatctctac cccgcggagg                                                  5300
//
ID   Gypsy-20_AnSt-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-127
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 816-816 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. This family is often inserted in
CC   (TA)n microsatellites.
XX
SQ   Sequence 127 BP; 33 A; 34 C; 24 G; 36 T; 0 other;
     aattacgtgt gtgtaaccct gcactgctac aacgcacacc acatggattg ctgttgtcct        60
     tcgtctcatt cgagccttag cattggaata aagaggatct aaatcgcact ccgcttgact       120
     cacaatt                                                                 127
//
ID   Gypsy-20_CQ-I repbase;    DNA;    INV; 4326 BP.
XX
AC   AAWU01028573;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_CQ_;
KW   Gypsy-20_CQ-LTR; Gypsy-20_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4326
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 419-419 (2011).
XX
DR   Genome; AAWU01028573; Positions    3847    8172.
XX
CC   Positions [3232-3711] - Integrase core
CC   'TCCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..4260
FT                 /product="Gypsy-20_CQ-I_1p"
FT                 /translation="MSNIPVPSPLQLGEEQEESFRTFKAHWGYYAIATDIA
FT                 KKAAETQVAILMSVLGPKAILLLHDLGLTEEEKKSTAAILQKLELKLTPQR
FT                 EKRTERTEFRNMKQLPEESYDDFLKRLRNKVKHCAFGAAEQKEELKEQFVK
FT                 GIRNSELRKQLLRDEALSLEQMVDKANAEKKIDELVEAYDQLHCDPGEGGS
FT                 KSALKVTTTKRLTKNCFFCGSLHGRKKEECPAWGKKCRKCGRMNHFESVCK
FT                 SGPKFKKAPKLKKRQRRGTVRKVEEETTSSESDDSDIEESNFVDIFSVEKK
FT                 SKSQMKIVVSLEVGPGYATTLKCQADTGAMVNIISLRDLHKCVKKPSMAPT
FT                 KVKLRCFGGQVIVPVGKVELPVRLKQKREVLSFVVVKSKQKPLLSASACIT
FT                 LGVIKVEHVGSVEVMLNSCEAIVKEFDDVFDGDGCFDGEFKIEVDESVRPV
FT                 QQKARRIPVAYMGELKKTISDLEVRGIIEPVNKHAEWISNLVLVKRGSKLR
FT                 LCLDPSELNSAIKRTRHQIPTVEEMLPDLQNAKVFSVLDAKNGFWHLKLDD
FT                 SSSELTTFWTPFGTYRWMRMPFGISAAPEMFQKEQQQIICGLKGTRCIADD
FT                 ILIYGVGDTMTEALEDHNRNLKAALVRFRERGLKINRSKMKLAMTEVPFFG
FT                 HILTNTGVKPDPQKVRAVAEIESPKTKKELHTFLGLATYLGKFLPSLSEIC
FT                 APLRNLVKQDVDFVWNEQAESSFEQLKQLAVTAPVLRYFDRREKLTIQCDA
FT                 SKAGVGCVLLQNGQPVVYGSRTLTKAESNYACIERECLAIVFACKRFEQYV
FT                 VGMPGVVVETDHKPLVEIFKKPIHTAPIRLQRMMLALKRYVVTVTYRKGSE
FT                 MHVADLLSRTAKRASTEGVDNEFEIYAIKSTESLLEYFAEINLAECLNLSD
FT                 RRFQEIAAETRKDPVLQKLMKVLTEGWPERKEDIDDELLVYRTMKDELTVQ
FT                 QGVVLKADRVLIPKTLRQTFVKRLHRAHQGVEYTLRAARESMFWPGMSDQV
FT                 TNAVQSCEACMEFSSSQCAPPMSTHEIPKYPFQRVHLDLCEMSMEGCKTTM
FT                 LVTADSYSDFVEVDILKSTSTATIVECCKRNFARHGVPEVVVSDNGPQFDN
FT                 ASFRKFAQDWEFVHSTSSPYHQSGNGKAESAVKQVKRLFKKTTRAGEDFWQ
FT                 ALLQQRNTPNKIGSSPTQRLLGRSTRNSIPVVTSKLKHIFQPTEADKIVEH
FT                 RKKVKKCYDRSTKPLPELQVGKEVVFQRRPDTDKRWEKAVVLEKHPDKSVQ
FT                 LRAADGAVLRRSAVHVKPFGRAVSGECRLEHRRETSPEQPNITERDIESGG
FT                 VLERRSLGQQKQREGNSQPVGTELDRGSPTGQESMASTSQRVADTQRPKRE
FT                 IKRPKRLEDYVV"
XX
SQ   Sequence 4326 BP; 1263 A; 922 C; 1279 G; 862 T; 0 other;
     tggtgtcaga agtgacttaa atttcgcgaa aaaaaacgaa tttcttcgtc gcgaaaacgc        60
     gtcgcgcgat aaaacaacaa gaaatcgaat cgaatcccag tgaaagttgg tgcgaaacgg       120
     ccgaggttca gcaagatgag caacattccg gtcccgtcgc cgctgcagct cggagaggag       180
     caggaggagt ccttcaggac gtttaaagcg cattggggat attatgcgat tgccactgat       240
     attgccaaga aggccgcgga gacacaggtt gccatcctga tgtccgttct gggcccaaaa       300
     gcgattttgc tgctccatga cctgggcctg acagaggagg aaaagaagtc gacggccgcc       360
     atcttgcaaa agttggagct gaagttgaca ccgcagcgag agaagcgaac ggagcgcacc       420
     gagtttcgta acatgaagca gctgcccgaa gaaagttacg acgatttctt gaaacggttg       480
     agaaacaaag tgaagcactg cgcgttcgga gcagcagagc agaaagaaga gttgaaggaa       540
     caattcgtga agggaatccg taacagtgag ctccggaagc agctgctgag agatgaagct       600
     ctctctctgg aacaaatggt ggacaaggcc aacgcagaga agaagatcga cgagttagtg       660
     gaggcctacg accagctcca ctgcgacccg ggagagggag gctcgaagtc tgcgctgaaa       720
     gtgacgacaa caaaacggtt gacgaagaac tgcttcttct gtggaagtct gcacggcagg       780
     aagaaggaag aatgtccagc ctggggcaag aagtgcagaa agtgtggaag aatgaaccat       840
     tttgagagtg tgtgtaaatc tggcccgaag ttcaagaagg cacccaagct gaagaaacgg       900
     caaagaagag gcactgtccg aaaggtggaa gaagaaacaa cttccagtga gagcgacgat       960
     tcggacattg aagaatcgaa ttttgtggac atcttcagtg tggagaagaa atcgaaaagt      1020
     cagatgaaga tcgtcgtctc gctggaagtt gggccgggtt acgcaacgac gctcaagtgt      1080
     caggcggaca cgggggctat ggtgaacatc attagcttga gagacctcca caagtgcgtg      1140
     aaaaagccgt cgatggcacc gacgaaagtg aagctgcgct gtttcggggg gcaagtgatc      1200
     gtgcctgttg gcaaagtgga acttccagtg cggttgaagc aaaaacgaga agtgcttagc      1260
     tttgtggtgg tgaaatcgaa gcagaagcct ctgctgtcgg cgtcggcctg cataaccttg      1320
     ggagtgatca aagtggagca tgttggctca gttgaagtga tgctgaactc gtgcgaggcg      1380
     atcgtcaagg agtttgatga cgtgtttgac ggagatggct gcttcgacgg tgagtttaaa      1440
     atagaagtgg atgaaagcgt tcgcccagtg cagcaaaagg cgaggcgcat tccggtggcg      1500
     tacatgggag agctgaaaaa gactataagt gacctagaag tgcgcggcat tattgaaccg      1560
     gtgaacaaac atgcggagtg gatcagcaac ctagtgttag tgaagcgcgg cagtaagctg      1620
     cgattatgtc tggatccttc ggaactgaac tcggcgatca agcgtaccag acaccaaatc      1680
     ccaacggtcg aagaaatgtt gccagatctg cagaacgcaa aagttttctc tgtcctggat      1740
     gcgaaaaacg ggttttggca tttgaagtta gatgacagca gctcggaact gaccacgttc      1800
     tggacacctt ttggaaccta cagatggatg cggatgccat tcggcatttc agcagccccc      1860
     gaaatgttcc aaaaggaaca acagcagatc atttgtggct tgaaagggac gcgctgcatc      1920
     gctgacgata tactgatata cggcgtaggc gacaccatga cagaggcatt agaggatcac      1980
     aacaggaatc tgaaagctgc attggttcgg ttccgagaaa gaggattgaa gatcaacaga      2040
     tccaagatga agctagcgat gaccgaagtg ccgttttttg gacacattct gacgaacaca      2100
     ggtgtgaaac cggatccgca gaaagtcaga gcagttgcgg aaatagagtc accgaaaacc      2160
     aagaaggagc tccacacgtt cttgggattg gccacgtatc tgggaaagtt tctaccgtcg      2220
     ctgtcagaaa tttgtgctcc actgagaaac ttggtcaagc aggatgtaga ttttgtgtgg      2280
     aacgagcagg cggagagctc attcgaacag ctgaaacagt tggcagttac ggcacctgtt      2340
     ctgcgctact tcgaccggag ggaaaagctg accatccagt gtgatgcgag caaggcaggg      2400
     gtcggttgtg ttctactaca aaacggacag ccagtagttt acggatcaag gacgctgaca      2460
     aaggccgaaa gcaattatgc gtgtattgag cgagaatgtc tggcgatagt gtttgcatgc      2520
     aaacggttcg agcaatacgt ggtgggaatg ccaggtgtgg tcgtggagac ggatcacaag      2580
     ccgctcgtcg agatattcaa gaagcccata cacacagccc ccatcagact gcagcgaatg      2640
     atgttggcgt tgaaacggta tgttgtaact gttacgtacc ggaaaggttc cgaaatgcac      2700
     gtggcagatc tgttgtccag aacggcgaaa cgagcatcaa ctgaaggagt agacaacgag      2760
     tttgagatct atgccatcaa aagcacggag agcctgcttg aatacttcgc ggagatcaac      2820
     ctcgcggagt gcctcaacct gtcagatcgt cgttttcaag aaattgctgc ggagacaaga      2880
     aaggatccgg ttctacagaa gctgatgaag gtgctgacgg aaggttggcc cgaacggaaa      2940
     gaggacatcg acgacgagct gcttgtgtat cgcacaatga aggatgaact gacggtccag      3000
     caaggtgtgg tactaaaggc tgatcgggta ctcatcccaa agactttacg ccagacgttc      3060
     gtgaaacgtc tacatagagc tcatcaagga gtagaataca cgctcagagc cgcccgagag      3120
     tcaatgtttt ggccaggaat gagtgatcaa gtgacgaatg ctgttcaaag ttgcgaagcc      3180
     tgcatggagt tcagttcaag ccaatgtgca cccccaatga gcacacatga gataccaaag      3240
     tacccattcc agcgtgtgca tttggacctg tgcgaaatga gcatggaagg ttgcaaaact      3300
     acaatgctgg tgacggctga cagttattct gacttcgtgg aggtcgacat actgaagagc      3360
     acgagcacag caaccatagt agagtgctgt aagcggaact tcgcgagaca tggcgtcccg      3420
     gaagttgttg tcagcgataa cgggccgcag tttgacaacg ccagtttcag gaaatttgca      3480
     caggattggg agtttgtaca cagcacttct tcaccgtatc accagagcgg aaacgggaaa      3540
     gcagaatctg ctgtgaagca ggtcaagcgg ttgttcaaga agactacgcg ggcaggagaa      3600
     gacttctggc aagcgttgtt acagcaaagg aatacaccaa acaaaattgg aagcagccct      3660
     acgcagcgcc ttcttggaag gagcactcgg aacagcattc cggtggtgac aagtaagcta      3720
     aaacacattt tccaaccaac agaagcggac aaaattgtgg aacatcgcaa gaaagtgaag      3780
     aagtgctatg acagatcaac gaagccgctc ccggaacttc aagttggaaa ggaagtagtg      3840
     tttcaacgac ggcccgatac agacaagcgg tgggagaaag cggtggtgtt ggagaagcat      3900
     ccggacaagt cggtgcaact gagagctgca gatggagctg tgctacggag aagcgctgtt      3960
     cacgtgaagc ctttcgggag agctgtgagc ggtgaatgta gattggagca ccggcgggaa      4020
     acaagtcccg agcaacccaa catcacggaa cgtgacatag agtctggtgg agtattggag      4080
     aggcgctcac tcggacagca gaagcaacgt gagggcaaca gccagcctgt tggcaccgag      4140
     ctcgatcggg gatcgccaac cggacaggaa agtatggctt cgacgtcaca aagagtagcg      4200
     gatacccaac gtccgaagag ggagatcaag agacccaaga ggctcgagga ttacgtagtt      4260
     taagtttttt tttgtttgcg acacacccct ctagtttgaa ttcaacattt tttatgaaag      4320
     gggaga                                                                 4326
//
ID   Gypsy-20_CQ-LTR repbase;    DNA;    INV; 102 BP.
XX
AC   AAWU01028573;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_CQ_;
KW   Gypsy-20_CQ-I; Gypsy-20_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-102
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 420-420 (2011).
XX
DR   Genome; AAWU01028573; Positions    3745    3846.
XX
SQ   Sequence 102 BP; 36 A; 28 C; 11 G; 27 T; 0 other;
     tgttatacac tgttatacac atacacacac ataaatgtca tccgtcacaa taaacagtca        60
     gtccagtacc aactatcatg gcgtcatgtt cacttaccaa ca                          102
//
ID   Gypsy-20_DAn-I repbase;    DNA;    INV; 6013 BP.
XX
AC   AAPP01019440;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DAn_;
KW   Gypsy-20_DAn-LTR; Gypsy-20_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6013
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019440; Positions   23835   29847.
XX
CC   Positions [5096-5572] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1479..2633
FT                 /product="Gypsy-20_DAn-I_2p"
FT                 /translation="MTLRSNRQNHETERLEQSLGTESVVDTSRSENIVEIG
FT                 KVVQAAMQTQQQLLKQDLTQFIQSQFAMMQMGNQPHSPNRHRSENHTQVGS
FT                 ENPAIVSGENSHLYGHQVGRSFSAVQPEKVPSIIQSWHIKFDGTKEGLQAE
FT                 EFLYRVEALAKQNLSGDRQLLCDHLHLFFIGKAGEWYWNFHRSFQRFDWRE
FT                 FCREFRNKFRDNESDMDIWELINNRRQAEKEPFEEYQFQVEKLVARLNTPI
FT                 TEDSLVKLLIRHSKPSIRYELMHLHVPTLTHLRAEIRTHEQFCRQMRFQTG
FT                 KSSYHQRPVVSQLEPDFEHVDCSEVAAVQRKQLKCWNCDKLGHRFDDCLDV
FT                 RSIFCYGCGAKDTYKPRCQKCNPSENQRGDATNHVKASHPRQ"
FT   CDS           3026..5659
FT                 /product="Gypsy-20_DAn-I_1p"
FT                 /translation="MLKCSGRIRTANDAQCNVTGRIKTEIAYRDLKKTIEF
FT                 FIIPDLNQDVYLGIDFWREFGLLDKIMEQKQTVSELTENREETAYEVAKTH
FT                 ALSTSQKQRLDLVMAKLPSYERNGLGRTHVLEHSIDVGDAKPVKQRHWPIS
FT                 PAKEDLMFKEVENMLALGIIEESKSPWSSNCVLVRKGPKVRLCLDSREVNK
FT                 LTIKDAYPLPHVDGILSRLPPARYITGLDMKHAFWQIPLEEKSRQYTAFTI
FT                 PNRPLYQYKVMPFGLCNAAQTLCRLMDIVIPPTLRTRVFVYLDDLLVLSED
FT                 FESHMTLLEEIASHLRKANLTINIAKSKFCMTEVKYLGYIIGHGQLKVDPE
FT                 KVSAVENFPVPNSTKQLRRFLGVSGWYRRFVDNYATIATPLTDLLKKNKTL
FT                 EWSNKADEAFKTLKQKLTSSPILRTPDFQKQFILLCDASLYGLGCVLAQKN
FT                 EDDIELPIAYMSEKLSKAQRNYSVTELECLAVIKGIEKFRAYIEGQDFLVI
FT                 TDHAALQWLLKQKDLRGRLERWAMKLRGLKLKIEHRKGSQNVVADALSRRE
FT                 EGSLDEILDSGPIIDLESNEFNSAQYRELREHIKANQDRLPDFKIVDQFVY
FT                 KKTEASSGDIAQEQQAWKLYVPVSLVDKVISRGHNPPDSAHIGMTKMVEKL
FT                 KRYLYWPGMVTQIRSYVSECPICKTSKSANTILRPPLGKPIVSERPFQKLY
FT                 MDLLGPYPRSKKGNIGLLIILDHNTKFHFLQPLRKFTSERICDYLESQVFY
FT                 TFGVPESILTDNGSQFKSGHFKAFLTRFGVRHICTAIYSPQANASERVNRS
FT                 VLAAIRAYIDADHTNWDSSIDQISASLRASVHRSTGFSPYFLCFGQNMIVN
FT                 GRDYELLRRLKALTDDKNTGFISVS"
XX
SQ   Sequence 6013 BP; 1915 A; 1216 C; 1422 G; 1460 T; 0 other;
     gccaccccga tcaagcgaaa gttttcctga tcctcaatac aacccgtgtc cgtccgtttc        60
     caacaggtct taattcaaat atttgcccga tcattaacga acagtaaagt gcacttaaat       120
     aattattaga gtagagtggt gttatgtagg aagctaggaa gaacccacac cgttccgacg       180
     agcttagaac cgagcaacgc aagaagtgca cgcccccgaa acctcctacg caccgtgggt       240
     aaagacgatc cgtcgatccc agggtgaata ccgacagtaa gccccttcgg tcccagtttt       300
     tctttaacga tgtggtaaag caaaagggaa cagcagcgta cgaatacttg ctcttactaa       360
     ctggatacta catataaaaa tttggcgccc aacgtgcggg gcccgaggac attttgtata       420
     gaatgcatga ctacgattac tcgatttgac gcccagagcg gacgttgaag cgaggattct       480
     agttacgagt aggccctgaa agtgagttgt gagactcact gtgttgctct attgtttcag       540
     agtttttttt taagtaatta gtttcagttt agcgttcagg aacaagctaa tagtctgtca       600
     ggaggtatct gaatgtctgc gcataggaat tgcggccgcg attcgagtat ttacggatcg       660
     ggacgaccac gcgacaacag tggctgaagc gactttttta gcttggaaat gagatttagc       720
     tgaagatttt attgtggaat agatgaggtg atttaggatt ctgtatctag gaatagcgcc       780
     ttatttcgag acaatcggaa tggtcgacca gatcaagccg acacttcata ccggataatt       840
     tcttgcagtc tagcggtgga agcatggaat atttgttcgt ggagttacat ccttcggaga       900
     tacttcgatt gagtggtacc ggatcaaaga agccataatt aagccgctaa atcaacatta       960
     actttgatga ttttattaaa agaggtagga ttcagggaat caacagtagg agttatactg      1020
     taaacatcag cccaaagcac agaccctaag aaaaagaaca ctttttgtag tttttacaag      1080
     caaaatgtca gttagacaca gtaattcgaa tctggcagca gccaccaacg aggacatgac      1140
     ggcgtgtacc atatgtacga tgcctatagt agcaaggaag cttaaagcaa ctacgcgttg      1200
     cggtcacacg ttccataatc aatgtatacg agaatgcttg atgcaagcga gccagtgccc      1260
     cgtgtgttac accgagtgca cggctcaaca actttcctta tcgcgcaaca atttgttggc      1320
     ggagttatca gttatcatgc gtagccgata cggcaccatc cggcagtaat aacaatttgg      1380
     tagatgtaga ttcaaatcca agcagtaatc ctgctaggac aagatcacgt agaggtagac      1440
     cagtagtacc aagaagagga gctatacagc gcacaggaat gactctcagg tcgaatagac      1500
     agaatcacga gacagagcgt ctggaacaaa gccttggcac ggagtcagta gtagatacgt      1560
     cgagatcaga aaatattgta gagataggca aggtagttca agcagctatg caaacacagc      1620
     agcagctatt gaagcaagac ctcacgcaat ttattcagtc gcaatttgca atgatgcaaa      1680
     tggggaacca accccacagt cctaacagac acaggtcgga gaaccacaca caggtcggta      1740
     gtgagaatcc agctatagta tctggggaga acagccacct atacggtcat caagtaggca      1800
     gatccttttc ggcagttcag cccgagaaag taccaagtat cattcagagt tggcacatta      1860
     agttcgatgg tacgaaggag ggattgcaag ccgaagaatt tctttataga gtagaagcct      1920
     tagctaagca gaatctcagc ggtgatagac agcttttgtg tgatcactta cacctattct      1980
     ttatagggaa agcaggtgaa tggtactgga atttccatcg ttcattccaa cgtttcgatt      2040
     ggagagaatt ttgtagggaa ttcaggaata agttcaggga caatgagtcg gatatggata      2100
     tctgggagtt aatcaataac agacggcaag cagaaaaaga acccttcgag gaataccaat      2160
     tccaagtaga gaaactcgta gcccgattga ataccccgat tacagaagat tcattggtga      2220
     agcttctcat cagacactca aagccatcaa tccgatatga attaatgcac ttgcacgtgc      2280
     ccaccttaac acatttaagg gcggaaattc gcacccacga gcagttttgc aggcagatgc      2340
     gatttcaaac agggaaaagc agctatcatc agcgccctgt agtctcgcaa ctagaaccag      2400
     actttgaaca tgtcgattgc agcgaagttg cagcagtgca acgaaagcaa ttgaagtgtt      2460
     ggaactgcga caagctcgga catcgcttcg acgactgtct cgacgttcgc agtatctttt      2520
     gctatggatg cggggccaaa gatacttaca agccccgatg tcaaaagtgt aacccatcgg      2580
     aaaaccagag aggggatgcg acgaaccacg tcaaagcgtc gcatccaaga caataaaatc      2640
     cgataatagt actcagacag aatttacgtt aagtccgctt ccacgggagt acgaacttaa      2700
     caaaacctta ccggatagat caatactgtt caagccctat catattcgcg aggcaaatta      2760
     taaggcagca agagagcgta tcctcggaga cgtcaactct tgtgcgaaga aggcgagacg      2820
     atcgaaaacg agaatacaaa gattttggag ggaagttcag acttgtcgac agaagttagt      2880
     ttcagcgata tttttgaact cagataacag gctatacaca gagattgtaa tagagaagaa      2940
     tcgatacgta gcgttattgg actcaggcgc gtccattagt tgcataggcg gtagagcaga      3000
     caaggaatta gcaactcaat cgaaaatgct gaagtgttcg ggaaggatta gaacagctaa      3060
     cgatgcacag tgcaacgtca cgggaagaat caaaacggag atagcgtacc gggatctcaa      3120
     gaaaacaatc gaatttttca taataccaga tcttaatcaa gacgtctatt taggcataga      3180
     tttttggcga gagtttggat tacttgataa aataatggaa caaaagcaga cagtatccga      3240
     actaactgaa aatagggaag aaacagcgta tgaagtagct aaaactcatg cactgtcaac      3300
     cagtcagaaa cagaggctag atttagtcat ggcgaagtta ccttcctatg aaagaaatgg      3360
     tttagggaga acacatgtcc tggagcatag cattgatgtt ggagatgcaa agcccgtgaa      3420
     gcagcgacac tggccgatct caccagcaaa ggaggattta atgttcaaag aagtagagaa      3480
     catgttggca ttgggaatta tagaggaatc caagagtcca tggagcagca attgcgttct      3540
     tgttagaaag ggacccaagg ttcgtctatg cttagattcc agagaagtga ataagctcac      3600
     gatcaaggat gcttatccac tacctcatgt ggacggtatt cttagtcgct tgccaccagc      3660
     ccgatacatt actggattag atatgaaaca cgcgttttgg cagataccgt tagaagagaa      3720
     atcacggcaa tacacagcct tcacgattcc taacaggcca ttgtaccagt acaaggtaat      3780
     gcctttcggt ctctgcaacg cggctcaaac tctgtgcaga ttgatggata ttgtgatacc      3840
     accaacgttg cgcacaagag tcttcgtata tttggacgat ttgctagttt tgtccgaaga      3900
     tttcgagtca cacatgacat tgctcgaaga aatcgcaagc cacctgcgta aggcaaacct      3960
     aacaataaat atagctaaat cgaagttttg catgacagag gttaaatatc taggatatat      4020
     cattgggcac ggccaattaa aagttgaccc agagaaagtt agtgcagtgg aaaactttcc      4080
     agttcccaac tccacaaaac agctgagacg atttctcgga gtatccggat ggtacaggcg      4140
     atttgtggac aactatgcca ctatcgcaac cccactgaca gatcttctta agaagaacaa      4200
     aacacttgaa tggagtaata aggccgacga agcgttcaag acgctcaagc agaagttgac      4260
     gtcgtcaccc attctgcgga cacctgattt tcagaaacag ttcattttat tatgtgacgc      4320
     cagcctgtat ggactaggat gtgtgttagc gcaaaagaac gaagatgaca tcgaattgcc      4380
     tatagcgtat atgtcagaaa aattgtcgaa agcgcaacgc aactattccg tgacagagct      4440
     agagtgttta gcagttataa aaggaataga gaagtttaga gcctatattg aggggcaaga      4500
     ttttctagtc attactgacc acgcagcgct tcagtggctg ttaaagcaga aagacttgag      4560
     aggtcgcttg gaaaggtggg ccatgaaatt acgtggactc aaactaaaga tagagcaccg      4620
     gaagggctca caaaacgttg tagcggatgc actgtcgcgt cgcgaagaag gttcactaga      4680
     cgaaatatta gatagcggac ctattatcga cttagagtct aacgaattca attcagcaca      4740
     gtacagagag ctacgagaac atatcaaagc taatcaagac aggttaccag attttaaaat      4800
     tgtcgatcag tttgtttata agaaaacaga agcatcaagt ggagatatag cgcaagaaca      4860
     acaggcatgg aaattgtacg ttcccgtcag tttagttgac aaggttatat cgcgcggtca      4920
     caatcctccc gattctgctc atattggcat gacaaagatg gttgagaagc tcaagcgata      4980
     tctatattgg ccaggaatgg ttactcagat tcgtagttac gtctcggagt gtccaatttg      5040
     taaaacaagt aagagtgcga acactatact gaggccacca ttggggaaac ccatagtatc      5100
     agaaaggccg ttccagaaac tttacatgga tctgctaggt ccttacccga gatccaagaa      5160
     gggaaacata ggattattga tcatattgga tcataatacg aagttccatt tcttgcagcc      5220
     tttgcgaaag ttcacctctg aaaggatttg cgattatcta gagtcacaag tgttttatac      5280
     atttggtgtt ccggagtcaa tcctaacgga taacggatcc caattcaagt caggacattt      5340
     taaagcattt ttgacgcggt ttggtgtcag acatatatgt accgcgatct actcaccaca      5400
     agcgaacgcc agtgaacgtg taaatcgatc tgtgttagca gcaattaggg catatataga      5460
     cgctgatcat acaaactggg attcaagcat tgatcagatt agtgcgtctt taagagcaag      5520
     tgtacatcgg agtacgggct tttcgccgta tttcctttgt tttggtcaga acatgattgt      5580
     aaacggacga gactatgagt tgcttagaag gctaaaagct ttgacagacg ataaaaacac      5640
     cggatttatt agcgttagct aggaagacgg ctaaggaaag gatcagtcag tgtcatgaag      5700
     caaacgctaa agtttataac ttgcgtagtc gtgcggtcaa gctgaaagaa ggagacaccg      5760
     tttatgcccg tagtttcgcg caaagcaatg cggcaaagaa gttcagcagt aagcttgcac      5820
     cagtatttgt caaagcaaag attaagaaga agataagtcc gatttactat gaattagtta      5880
     gcgacacgga gaaacaacta ggagtgtacc atttgaagga catcaaaaca taacgaatag      5940
     aaagtgaaat gtatcagccg acccttttca gttaatgcat cctcgatcga gcttcggctt      6000
     tattaactgt ggt                                                         6013
//
ID   Gypsy-20_DAn-LTR repbase;    DNA;    INV; 1559 BP.
XX
AC   AAPP01019440;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DAn_;
KW   Gypsy-20_DAn-LTR; Gypsy-20_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1559
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019440; Positions   22276   23834.
XX
SQ   Sequence 1559 BP; 486 A; 297 C; 367 G; 409 T; 0 other;
     tgtgggggtc gaaacagtag acagaaccaa gaaattattt tgtatcagac tttaccaata        60
     gtcggaaatg ccgaatccga agtgtagtgt gtagagcata gagacgaaaa cggcaatata       120
     atcgtcccgc tctggcacac ggtacgatcc ctttctgaca tagttatgcg aaagcgctga       180
     gagacatatg gaaacggaga tcaggaattg tcccgttatt ggaagttttg gagattttct       240
     cggttgcgtg gcaacgaagt tagcttatta gcagttcgtt catttgaatt tgcgatagag       300
     agagaaccag acgtgaaaac tgacctgcgt aaatttgaaa gaaggcagca accacgtgct       360
     tacacagctt tggaatttat aaaatttcca acctcttgac aataaatatt ggaaacatct       420
     cttgcaaagt taagaatact aagattgctg aaaggtaaat atagtggata gatagtgaac       480
     agatcagtga gagaatttgt attacagtgg gaaagcaacc tatattgcga tctccaccgg       540
     ccggttggcc tcgcgcacgt cgcgtagcgc gttcgcgctt ttcatcaatg tggcagttgc       600
     cactgacaaa aacaaaggca accggtcgga aaggaagcaa gtgaaggaag aaaggagtgg       660
     aaaaagatcg agtgtaagag gtcgagtaca cgtggcagcc taaccttaaa ctgatggcgt       720
     aacagagcca tgagcagagt agactgaagc agcggtttcc acagcagcca aagttgggac       780
     tcactcatcc ttgtgccagt gtggcatgaa ctcataacca cgtgatctcg cagatccacc       840
     ggtcctaccc tccgcactcc gcaccccccc cgcagcgacc caaattcagc aagagacccc       900
     gagaaaagca atcacgaact aggatgtgag aagtatcaaa gcgttggatc agttaaaatt       960
     agatttaaga ttttgctaga catagttatt tagggtaatt tctattttca tgtagtttaa      1020
     atgtaactgc acatgcacca cacaaccgcc accagccttc acttgcaacg atagaagcac      1080
     catttttaca gaaatccgca tcttcgatgg gcccaacgaa cctgcatcgc cggaaacgag      1140
     cgtaagtccg taaaaaagtg aatatatatc tatctatata tataaatgta gcctatgtta      1200
     gtgaatgcgg tgacaattgg tacatatgac agatagggta aattgaaata agatgaattt      1260
     gtagtattat ttcttttgtt ctttagtttt gatttcctca atttcctttt gagttttctt      1320
     tattttgata tggcgcaaag gcgtatgaag tgtattttga tttgatttag taaagataat      1380
     gtatattaca atggaataga agaatattat ctgggtctgg ggcttatggt gatgcagttt      1440
     tcaggaaact ccgaagtcgt ttgagtctgt agagtacatt actctaggga taccaagcgg      1500
     attcacatcg aggtatcaag gtagggaggg taaagaccag gggagcgtac aacatctca       1559
//
ID   Gypsy-20_DAzt-I repbase;    DNA;    INV; 5574 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5574
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 764-764 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           632..2191
FT                 /product="Gypsy-20_DAzt-I_1p"
FT                 /note="RING zinc finger and gag."
FT                 /translation="MAVRRSTDDIVTALQDAEPFCGICNEVLGASELVANT
FT                 PCKHKFHKLCILEQIRTNPKCPTCSLDCSALALTFSNNTLFAELNAEGARP
FT                 SSANESFITINETSSRPKRGQKFVRRGMSTRSTNRSKQDRSLTEPINNSTE
FT                 LPINTQVQIANCVQSAVSSQQAQLIEQLTSYLSKTIESSIQNQLASLQLTQ
FT                 PGNADVSPGXSRNSNANQTNNFGIGQARESNAEALLDFSRASANRSYSSSH
FT                 VEPTKVSSIMQNWHIKFDGSKTCMRMEEFIYRVRSLTQQNLGNNYQLLCNH
FT                 LYLLFAGKASDWYWKFHRAYPNFSWDTFSIEFRRRFEDVETDYDIWEKIRK
FT                 RRQGENESFDDFQYAIEDLVDRLQNSVTEEDIVNLLIRNSKPSLHHELLHL
FT                 KIVNRSQLRREVRKHEQFYNDIKLVKQKTLRSYVSELSSPDSGEQLSDDHV
FT                 EPNEVCQIQRRAAQTVPTCWNCDNKGHKFDDCVGPRKIFCYGCGTKDTYKP
FT                 VCPKCNPSGNRQKDVSNNNKQTHP"
FT   CDS           2137..5508
FT                 /product="Gypsy-20_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="PFGKQTEGCVKQQQTDTSLENIFQESPTDFSNEPKIS
FT                 SQPVEKPLRKALHFSFTPLPEREANYKITRKEIFDRIESFKFIKKPKRSTK
FT                 RLRKFWKIVRMNKNKFVSAIFLSSDDRLYTNVTIEGRDYIALLDSGATISC
FT                 IGGSAAREIVAHSKVKKCSGAIRTANDAECKVIGKLTTQINYRGCTEVLEM
FT                 FLIPELKQEVYLGIDFWKKFGLLDSITHTAEISELDVGGTDDSEEQPNLHE
FT                 LTTDERSRLNKVISIFPSFATEGLGRTSLVTHSIDVGAAIPIKQRHWPVSP
FT                 AVEKLMFAEVDNMLALDVIEESTSPWSSNCVLVKKGEKHRLCLDSREVNKV
FT                 TRRDAYPLPHIDGILSRLPPARYITSLDMKHAFWQIPLDEQSRQYTAFTVP
FT                 NRPLYQYKMMPFGLCNAAQTLCRLMDRVIPAHLRTRVFVYLDDLLVLSEDF
FT                 ESHLLLLQEIALCMRKANLTINISKSNFCIKETTYLGFIIGNGQIRTNPDK
FT                 IKAISKFPVPTTVKQLRRFLGLSGWYRRFVENYATVSFPLTELLKKKKDLQ
FT                 WNEDAQQSFETLKSCLTASPILITPDFSKPFILLCDASTYGIGCVLAQDRD
FT                 GVELPIAYMSEKLSKAQRNYSVTELECLAVIKGIKKFRSYIEGQDFVVITD
FT                 HAALQWLMRQKDLSGRLARWSMKLRSFTFNILHRKGSLNVVADTLSRQDEP
FT                 AIEELTQINPMVDLDSDQFKSADYLSLIENILQNQSRFPDLKVMDGQVYKR
FT                 TVFASGDESQKSASWKLWVPSGLIANVLYQAHDAPSSAHCGMSKTIEKLKR
FT                 YLFWPRMVSQTRKYISDCTVCRTTKSPNMILRPPMGKPFTSDRPFQKLYID
FT                 LLGPYPRTKKGNIGLLIVVDHSTKFHFLCPLKKFTAPKICEYLEGSLFYTF
FT                 GVPEVILSDNGSQFKSSYFQAFLNTFGITQKCTAIYSPQANASERLNRSVI
FT                 AAIRAYIGNEHTNWDNNLNAISGSLRSTLHRSTGYSPYFLAFGQNMMLNGK
FT                 DYALLRKLDLLNDDTRIENPELLQLVRQQAKKNINKAHEENSRRYNLRCRD
FT                 TQLKVGDLVYARNFTQSSAIKRFSSKLAPTFISAQVHKKRSPYYYELVNEN
FT                 KKNLGVYHLKDIQIKK"
XX
SQ   Sequence 5574 BP; 1794 A; 1088 C; 1125 G; 1565 T; 2 other;
     cattttggcg cccaacgtgt ggggcccaca ggcaacttcc ttgttccttg gtcctttatg        60
     ctcaaacctg agttcatcta aataacaaca ttacattttt ttttttgcaa aatattgcat       120
     aaatattaaa gatttcaaaa tttttttgta gactcggttt tcggattcag caaccacaat       180
     tcatttgatt aggatgggtt gaccaaaaca gacctatagt atctaattgc gagtatcaga       240
     ggtatttatg caacaccata cagtgatctg tgtaaaacag aattggtttt aggatttagc       300
     gattgcaatt cattctattt ggattgatcg accaaaacaa acctgtgtta tcacaatatg       360
     caccttgaag tatttggatt tacaactttt attgcgcacc tgcgatagtt gtccaatatt       420
     tcaatgcgca aggtcatgta attataaata gtccatatta ataacaatag acaagcctac       480
     tgaaaccttg atataattgt aagcattctg gcatgtgaga aagacagaca ttatcattat       540
     tgcaatcacc tattattgca aatcattctt tttatttacc tttttttttt gaatttttat       600
     taattttttt ttatttaata ttgtctgcgc aatggctgtg aggcgaagta cggacgatat       660
     tgtaactgct ttgcaggatg cagaaccatt ttgtggtatt tgcaacgaag ttttaggagc       720
     tagtgagctt gtagcaaata caccgtgtaa acataaattt cacaaactat gtattttgga       780
     acagattagg acaaacccaa aatgtcccac ctgttcatta gattgttctg ctctagcact       840
     aacattctct aacaacacgt tgttcgcaga gcttaacgca gaaggagcgc gtccatctag       900
     cgctaacgaa tcctttatca cgataaacga aacgtcaagt cgacctaaaa gggggcaaaa       960
     gttcgttaga aggggtatga gtacaagatc aaccaaccga tctaagcaag accgctcact      1020
     aacagaaccc ataaataaca gcacagaact tccaataaac actcaagttc aaatcgctaa      1080
     ttgtgtccag tcagctgtta gcagtcaaca ggctcaactt atagaacagc taacttcata      1140
     tttaagcaaa acaattgaat cttcaattca aaatcagtta gcgtcactac agttgacaca      1200
     gcccggaaat gctgatgttt cacctggtgk ttcacgtaac agtaacgcca accagacaaa      1260
     taacttcggt atcggtcaag cacgagagag taacgcggaa gctcttttag atttttcaag      1320
     agccagcgca aatagaagtt attcgagctc acacgtagaa ccaacaaaag tttccagtat      1380
     tatgcaaaac tggcacatca aattcgatgg ttccaaaact tgcatgagga tggaggaatt      1440
     tatctatcga gtacgttcct taacccaaca aaatctaggt aacaattatc aattgctttg      1500
     taatcactta tatcttcttt tcgcggggaa agccagtgat tggtattgga aattccaccg      1560
     cgcataccca aacttttctt gggatacttt tagtatagaa tttaggagaa gattcgagga      1620
     tgtagagacc gactatgaca tttgggagaa gatccggaag cgccggcagg gcgaaaacga      1680
     atcattcgat gactttcaat acgcaattga agatcttgtt gacagacttc aaaattctgt      1740
     aacagaagag gacattgtca atttgctaat tagaaattcc aagccttctc ttcatcatga      1800
     gcttcttcac ttaaagattg tcaatagatc gcagcttcga cgagaggtac gtaagcatga      1860
     gcagttttat aatgacatta aattggtcaa gcaaaagact ctacgctcat acgtatcgga      1920
     attgtcaagt ccagacagtg gcgagcagct atccgatgat catgttgaac ctaatgaggt      1980
     gtgtcaaata caacgccgtg ctgcgcagac agttccaacc tgttggaact gcgacaacaa      2040
     gggccataag tttgacgatt gtgtaggtcc acgtaagatc ttttgctacg gttgcggaac      2100
     aaaggatact tacaaaccag tatgtcctaa gtgtaaccct tcgggaaaca gacagaagga      2160
     tgtgtcaaac aacaacaaac agacacatcc ttagaaaaca tttttcaaga atcacctact      2220
     gatttttcaa acgagccaaa aataagctca caaccagtag agaaaccact gcgtaaggca      2280
     cttcattttt cttttactcc actaccggaa agggaggcaa attataagat aactcgtaag      2340
     gaaatttttg ataggataga aagttttaaa tttataaaga agcctaaacg ttcaacgaaa      2400
     cgcttaagaa aattttggaa aattgttcgc atgaacaaga acaagttcgt ttcagctata      2460
     tttcttagtt cagatgacag gctgtatact aatgtcacca tagagggcag ggattatata      2520
     gcgttgttag attcgggggc cacaatcagt tgtattggag gttcagctgc cagagaaata      2580
     gtggcgcata gcaaggttaa aaagtgttca ggagcaataa gaacagctaa cgatgctgaa      2640
     tgtaaggtaa taggcaagct gacaacacaa atcaactacc gcggatgcac agaggttcta      2700
     gaaatgtttc ttattccgga actcaagcaa gaagtttatt tagggataga tttctggaaa      2760
     aaatttggac tgttagatag catcacacat acggcagaaa tatctgaatt agatgtcgga      2820
     ggcacggatg atagcgaaga acaaccaaac ctacatgaat taacaacgga cgagagaagt      2880
     cgtttaaata aagtaataag tatttttcca tctttcgcta ctgaaggatt gggccgtact      2940
     agtttagtaa cacactctat agatgttgga gcagctattc ccataaagca acgacattgg      3000
     ccggtatcac cagccgtaga aaaattgatg tttgccgagg tggacaatat gctagcactt      3060
     gatgttatag aagagtcgac aagtccatgg agcagtaatt gcgttttggt aaagaagggc      3120
     gaaaagcata gactgtgtct cgattcaaga gaagtaaaca aggtcactag acgggatgca      3180
     tatccgttgc cacatatcga tggtattctg agtcggttgc cacccgctcg atatatcact      3240
     agcttagaca tgaaacacgc attttggcaa attccgttag atgagcagtc acggcaatat      3300
     actgccttta cagtgcctaa ccggccatta tatcaatata aaatgatgcc atttggtctt      3360
     tgcaatgccg cccaaactct ctgtagatta atggatagag tcattccagc ccatcttcgt      3420
     actcgcgtgt ttgtatactt agatgatcta cttgttttgt cagaggattt cgagtcacat      3480
     ttactgttgt tacaagagat agcgttgtgt atgcgcaaag caaatcttac cattaacatt      3540
     agtaaatcga acttttgtat aaaagaaacc acgtatttgg gttttattat tgggaatggt      3600
     caaataagga ctaatcctga taagatcaaa gccatctcaa agttccctgt accaactaca      3660
     gtcaagcaac tgcgtcgatt tttgggtcta tccggttggt atcgacgatt tgtcgaaaat      3720
     tatgctaccg ttagttttcc cctaacagag ttgcttaaaa agaagaaaga tttacagtgg      3780
     aatgaggatg cccaacagtc gtttgaaact ttaaagtcct gtctaaccgc ttcaccaatt      3840
     ctaataactc ctgacttttc aaaaccattt atattacttt gtgacgctag cacttacgga      3900
     atcgggtgtg tcttagctca ggatcgcgac ggcgtcgaat tgccaattgc atacatgtcg      3960
     gaaaaattat cgaaggcaca acgtaactat tcggttaccg agctagagtg cttagccgtc      4020
     ataaaaggta ttaaaaaatt ccgctcttat attgagggac aagatttcgt agtcataact      4080
     gaccatgcag cactacaatg gttaatgcgg cagaaagatt tatcaggaag attggcgaga      4140
     tggtcaatga aattgcgtag tttcaccttt aatattctac atagaaaagg gtcactaaat      4200
     gttgttgctg acactctatc gcgacaggat gaaccggcta tagaagagct cacacaaatt      4260
     aacccaatgg ttgatctaga ttcagatcaa ttcaaatcag ctgactatct gagtttgata      4320
     gaaaacattc ttcaaaacca gagtaggttc ccagacttga aagtaatgga cggtcaagtc      4380
     tataaaagaa cagtattcgc ttcgggagat gagtctcaaa aaagcgcctc atggaagctt      4440
     tgggtgccgt cagggcttat tgcgaacgtg ttgtatcaag ctcatgacgc tcctagctcc      4500
     gctcattgtg gaatgagtaa aaccatcgaa aagttaaaaa gatatttatt ctggcctcgt      4560
     atggttagtc agacgcgcaa gtacatatcg gattgcaccg tttgtcgtac gaccaagagt      4620
     ccgaatatga ttctcagacc tcctatgggt aagccattta cttctgatag gccgtttcag      4680
     aaactatata tagatctctt agggccatac ccmcgcacaa aaaagggaaa cataggattg      4740
     ctcatagttg tcgatcacag cacgaagttt catttcctgt gcccacttaa gaaattcaca      4800
     gcccctaaga tctgtgagta tctggaagga tctctctttt atacatttgg agtgccagaa      4860
     gttatcttgt cagacaatgg atctcaattt aagtctagct acttccaggc attcttaaac      4920
     acctttggga tcacacaaaa gtgtactgct atttattcgc cgcaagctaa tgccagtgag      4980
     cgattgaata gatccgtgat agctgcgata cgagcgtata tcggtaacga acataccaat      5040
     tgggataata acctaaatgc catcagtggt tcgttacgat ctactttaca tagaagtaca      5100
     ggttattctc catactttct agcatttggt cagaacatga tgttgaatgg caaggattac      5160
     gcgctcttgc gtaagctaga ccttttaaat gacgatacta gaatagagaa cccagagtta      5220
     ttgcaactag tccgtcaaca ggctaaaaag aatatcaaca aggcacacga agaaaattcg      5280
     cgtagataca atttacgctg ccgggataca cagttaaagg ttggagattt agtatatgct      5340
     aggaatttca cacagagtag tgcgattaaa aggtttagtt ctaaactagc gcctacattc      5400
     ataagcgctc aagtgcataa aaagcgaagt ccatactact acgaattagt caatgaaaac      5460
     aagaaaaatc tcggcgtgta tcatttaaaa gacatccaaa taaagaaata atcttttctg      5520
     ttctcagtct tcagataacg atccgtcgaa caagtcttgt atcattatct gtgg            5574
//
ID   Gypsy-20_DAzt-LTR repbase;    DNA;    INV; 2180 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2180
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 824-824 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2180 BP; 659 A; 453 C; 411 G; 655 T; 2 other;
     tgtagtagtt agcaaataaa agggaatttt tttttwttac gtcgtgagac accctacgtt        60
     tttgtataag ggccaagctt tagttaagtt ctctgctctt acgttctctt caaagcttta       120
     gccgctctta agtggaacac ccacgcatgc aagcgacgaa cggtgggaag catagacggc       180
     aatcgtatga ttacacagtt aatctatgct gtgcattggg cgatcgtcta acgctgctgc       240
     gaagttcgag atcatacgat taaacagtta aacgagaacc aaaagctctg ctgcaccagc       300
     gacttagcca tcgtctgtta tagctttgga cattcgaggg aaattgatca agcaataaag       360
     acgtcgttag tgaaaggcga acaagttgaa tattcaaatc cagactgtac ttataattcc       420
     gtctatatat tctgactcaa atacatatat ttaaatcgta tactcggaag tgctattgcc       480
     acagaataca tagtgattgc tataaatata aaaatagtgt tagtggatat ttggaaaagg       540
     tatgttttca catcagtgcc gtgcacgtgc taacataacc tatgttgcag ggaaattgca       600
     cctaagctgc cccatcgcgg tacagtcttt agaagacttc cctgggagca gacttaggcg       660
     tgcggttgtc gagttttctc caactacaac gatattattt cctggaccct aaatcgacac       720
     cgtgttcggc ctgtgcatag atccaatgag gttcagatct gctccactca accccgaatc       780
     tggccactac acaagttcgg aagtatggag taacctcctg ccaggcaatt ctgccgtacg       840
     gccatatccg tatgcatcac taaaggcgat ctccagctca acttcaggca gacaagggcc       900
     accgacacag cgccccggat ccagagtttg attaaattac atttatttca tcatcaaatc       960
     cctacgcata gacatcagaa gttaacgtaa ctgaaaatta aattgaaact ttagtgacac      1020
     ccctctctaa gctacgcgca tacatacaca tgcacagacg tgcaccttaa acttattttg      1080
     gttgtctacc ttttgatatt ctcttttctc ttcttttctt gcctaaaaaa attaattgcg      1140
     atatgtaaca tgtaaaacaa aaacaactag ctgatagcta tgcagcgggg ctttgtacca      1200
     tggttatatt gtgtgcatta tatgtaatca ttattttaat attttaaaca gcggcgttca      1260
     acaatctgcg acatcattgg gcccaacgat cagcgtaaga aagtgaaatg ccggagtaag      1320
     taattattac caagcgaggt atactgatta atttccgagc cgtgctcgac atatgagtgc      1380
     acataaaatg atgtaaaccc kgctgctcag cgtacttatg tataaagaac actccagtct      1440
     gctcttgtct ttgttatcca tttttctcat tattagccta cctaatatat atatatatat      1500
     attcaattcg atatctaatg tttaacgtga attaaaaatg aatttattac tatatttacg      1560
     tcccaattat aattaagcaa atagtacccc ccccatataa gtttaaagtt taacgttagt      1620
     gcctctattc aacatcaaac atgtttattc aatttggagt tttgccatct attaaaatat      1680
     gaattgtttt gaaaaagata tgaatcttta atctaattgt aatgatctgt cgagtatccg      1740
     tgccaggatc ttataatatg tggtgaatct tatctgaagt tcatcaaggg acaatgcagc      1800
     aaatctaacg cattgtcatg gtagggtggg tatagaagag agggacaacc aacacctagg      1860
     ttccctccca ttagtagcgg gttcagtagg gctttcattt ggcgtagtcg gcgctatcaa      1920
     gacatctttg tgtttgtatt tattctataa atacccattt ataatttctg taaaagtgca      1980
     ctattaaatg tagtagagta caatagtaca gtttggtgag gaagaacccc gaccaatccg      2040
     gcgagctaga cccgagccta gcgagagtgc acactaccaa gcctatctgt acgccgtcct      2100
     taagttcagt caatatcatc tgctgataac aagggcccat atatatgata catatatatt      2160
     ctcaactctg gtatactaca                                                  2180
//
ID   Gypsy-20_DBp-I repbase;    DNA;    INV; 7132 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-7132
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 687-687 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1992..2900
FT                 /product="Gypsy-20_DBp-I_1p"
FT                 /translation="MDSGNASGLLSPILGNSSTPSNTSLNLQQLLALVHQL
FT                 PTYEGPPDNLDRFISRVDQLLLLAGSVDQATCGQYLLGTIRDKIKGRADEA
FT                 LSVCDVLISWDDIKANLKRLYSSKKTEEMLVRELHNLPDGLSMGKLYYTAT
FT                 KIRSELMSLAREADPSEHSLTVKREQYDRFCLNTFLVGLKDPLRSAIRNQR
FT                 PETIEKAYEYRQVELNFSRNLNKHQENRRRDSSTYTNHPYAKGQSTYNNSN
FT                 RRYILGQQNYNNGNNGRHVPRHDNTNNDNNSRFTQRQQILTTMIIDASQVN
FT                 IIPITIEWSTR"
FT   CDS           3359..6094
FT                 /product="Gypsy-20_DBp-I_2p"
FT                 /translation="MDFLSGLNAKINFADSILETPETAIPILTRANPVDTL
FT                 HTLPQNTKMRLPLPVNLMQGDFIYETTNLDNQIVITGGLYTAIAGSAYFEV
FT                 CNNSDQTQTLYLEEPLQAEEFSPRTHQYLNCMSAATNTELPDDQQLDIQTE
FT                 HLNSEEKQHILKLCKSFKRLFHNENNQLTFSNAVKHSIPTTDNIPIHTKSY
FT                 RYPFVHKDEVRKQISKMLEQNIIKSSHSPWSAPVWVVPKKEDITGEKKWRL
FT                 VIDFRKLNEKTISDRYPIPNIADILDSIGKTMYFTTIDLASGFHQIQMNPR
FT                 DASKTAFTVENGHYEFTRMPFGLKNAPATFQRVMDNVLGDLVGNVCLVYLD
FT                 DIIVFSPSLQKHIADIKSVFIKLQNANLKIQPSKCHFLRKEIDFLGHIVTQ
FT                 EGVKPNPLKIQTIKDFPCPKTIREIKSFLGLLGYYRKFIKDFAKITKPMTR
FT                 QLKGRKSITIDEEFKQAFETSKDLLCNDPILIYPDFNKSFTLTTDASNYAI
FT                 GSVLSQGSDTNDRPISFASRTLSDTEIRYSTIEKEMLAIIWSVGHFRPYLF
FT                 GRRFKIVTDHKPLTWLENLKGQNPKLLRWKTILSAYDYEVVYKKGSQNVVA
FT                 DALSRIEPNLNINEDPQIIPIASQPLNHFNSQIVFRTGSTTARQIETPFAH
FT                 KIRHIITEPVHTFDSVTNALQTILKPNKTFAIFAPDDIFKIIEESYNNYFF
FT                 ENDLYKISRCKIRLTEITNPHDQENKIRAYHLNTNHRGIDETYNHLKRDIY
FT                 FPHLKDIITKIIKNCDTCLILKYDRHPHKPLLQTPTAPEGPLAVVHIDIYF
FT                 INNACNLTIIDKFTKLAQAYPLSNXNSMKVADALLQFISHYGXPKEIIFDX
FT                 GAEFSGSLXNDLLTQFQITAHXTSGGGVGNXXVESAFHLNRTIQNNHXQXK
FT                 GSXPRMRA"
XX
SQ   Sequence 7132 BP; 2674 A; 1573 C; 1180 G; 1689 T; 16 other;
     ggcgcagccg gactacgaac aagggattaa ccatgcccac tacgcttatc gttcaaattt        60
     gcttgtagga ggtgagtgaa caggtgacag cagtggttgt gacacattag tagtgaaata       120
     attacaaata atacatacat acttaaaaga gagaacaatt gcaaaaggaa ataaaacata       180
     acgtgcaagt gcaaatggga tttcaggagg gagcgacacc aaaaatgtgc aaataaaata       240
     aacgaaacaa acgaaatcaa attctaaatg ccatgcaagc gaccgtatat gtgtacatca       300
     aacgctgata aggcaccggg ttcgctagta cgggacaatt tactactact ataccaacaa       360
     gctgctgtgt gcgatgaccg tataagtgta catcaatcgc tgataaggca ccggtatcat       420
     caatacacag cagcagctca acaaaaaaaa aaaaaacaaa aaatataaat aaataaaaaa       480
     aaaaaaaaaa aaaaattaag ataaataata aaaaaaaaaa ttcgacatct taaactgctg       540
     tgtgtggcga tcgtgtgtgt gtcggagagc actttgtgtg cacatgtgag agagccacgt       600
     atgcatcttg ggtatttcat caaaatagta atttcatcac tatgctacta ttgcatcagc       660
     ctatagctga attgcgattg gttgttgtgg ttttgcgtct ccaagaacaa tcgttacgac       720
     gcgacgacag cctggcgccg ctgtcgccga gtatggttca ctgaagaagc aaattaagga       780
     aatagatcag tcgaacatta gacttcgttg tgaccagagc tcgatatcaa cgcgtatatc       840
     aatcgccgac aacggaagag gacaacctgc acacagtggt ttacaaagat aaatgtaagt       900
     tgtgtgatta acgaccgtat atgtgtacaa caatcgctgt taagacaccg ggatcgtttc       960
     catttgtcaa tttacatgaa tgcaaatgta ttattatgaa aaacaaaaca agaatactaa      1020
     aacaaaagaa aaaaacaaaa atggtagaat aaattaaacc tgcacaaata ttatactgtt      1080
     cccttcggca aatatcaggc aaacatgtat gtatttgtgt tacgccgctt gtgaaactct      1140
     tgttgcgtcg ttgtgcagtg gctgccgcca tgagccgatt acgcgccgga gtggcggagt      1200
     gacacttgat gccgtgttgg cttgtacatt gttgaattcc ctttttgcac tacacactaa      1260
     agaataataa aattaattga aagaaaatgc tatacattct atttctatat tatatgtcaa      1320
     aaaaaaaaaa aaaaataaaa aataaaaaaa taataataat aataataaga aaaagaagag      1380
     aaaacaacaa gcattccatg aacagcataa cttttattgt tgtcacgtgt tcactaacct      1440
     ctaataaaaa aaataaaaag aaaaataata tatatttatt tgtatattta ctaaatcgca      1500
     tacaacaaca aggtggaagg aaacacagca gcactacacg aatggcatac aacttacact      1560
     aaacacaggg aagcagsaaa actacaggtt ttccttttgc tttgtaaaga atacatacat      1620
     atatgtacat agtatcacat attatagtac actatttaac cacattaata cacaaacgaa      1680
     gccgtgtggc aaatttatcc taatttatac tatacttcaa aaatacatac acatataatt      1740
     aatttacata tatatagtta ctactttaca tattattact attctatata cattacatac      1800
     gtagcattac catacttcaa tatagccagt ttttttttct caatacatgt aaaacagtca      1860
     ccactagtaa cacagttagg ggcagattag atctaaagag cgaggccagt ctatctgaga      1920
     aaaggaaagc gatagaaaca aaagagaaag accagctagt tcaatcccaa aacaatattc      1980
     ctaccaacgc tatggattcc ggtaacgcat cagggctact aagtcccatc cttggcaatt      2040
     catcaactcc ctcaaacaca agcctgaatc tacaacaact acttgccctt gttcaccaac      2100
     tacccaccta cgaaggccca cctgacaatc ttgatagatt cataagtaga gtagatcaac      2160
     tacttttgtt agccggatca gtagaccaag caacttgcgg acagtactta ctgggaacta      2220
     tccgtgacaa gattaaaggc agggcggacg aggccctgag tgtctgcgat gtactcatca      2280
     gttgggatga tatcaaagca aatctcaagc gactatactc tagcaaaaaa acagaagaaa      2340
     tgcttgttag agagctacat aatcttccgg acggactcag tatgggaaaa ctatattaca      2400
     cagccaccaa aataagaagc gaattaatgt ccctggccag agaagcagac cctagtgaac      2460
     actcactcac agtcaaacgg gaacagtatg acagattctg cctaaatact ttcttagttg      2520
     gattaaagga cccacttagg tcagccatta ggaatcaaag accagagaca atcgagaaag      2580
     cgtacgagta cagacaggtc gaattaaact tctctagaaa cctgaataaa caccaagaaa      2640
     atcgacgacg cgacagctcg acgtacacga atcacccata cgcgaaagga caatcaacct      2700
     ataataactc caatagacgc tacatattag gacaacagaa ttataataat gggaacaacg      2760
     gccgccatgt accacgacat gataacacca acaacgacaa taatagtcgc tttacacagc      2820
     gacagcaaat tttaacaaca atgataatag acgcttcaca agtcaatata attccaataa      2880
     cgatagaatg gtcgacacga tagacaaact ttgggtagga accccttcca caataacatc      2940
     aaaccagagc agaccctaaa ccaccaaggc aagaacaacc ataatccaag cgctccccta      3000
     tgtaacatca acgatgatga aaattttcta ctagaagcct cgggaaacca gtcggttaca      3060
     taagcaagaa gagtcacgga tcttccttgc catttgtttt cctatcatca aacttcatgg      3120
     tgtcaaaacc tctcaaattt ctaatagata ctggatctac ctactcattc ataaacccag      3180
     cacttattaa cgaagaccgc atcaaaaaac ttacctccga tataaatatc cacactgtac      3240
     tcagtacatt caaaattcgg gaatatacag atggaataaa tttcaaacag ttcaaaaaat      3300
     acccaatttt aagttcttac tatttaattt ccaccctcac ttcaatggtc ttctaggcat      3360
     ggatttccta tccggcctaa atgcaaaaat aaactttgcc gactccatat tagaaacacc      3420
     agaaaccgcc atcccaatcc tcacaagagc aaaccctgta gatacattac ataccctacc      3480
     acaaaatacc aaaatgcgac taccgctccc agtaaactta atgcagggag actttatata      3540
     tgaaaccacg aatttggata atcaaatagt cataacaggt ggcttataca ccgcaatcgc      3600
     aggatccgcc tatttcgaag tctgtaataa ctcagaccag acccaaacac tttatctaga      3660
     agaaccgtta caggcagaag agttctctcc acgaacccac caatacttaa actgcatgtc      3720
     cgcggcaact aatacagaat taccggacga tcaacaatta gacattcaga cggaacacct      3780
     caacagcgag gaaaaacaac atattctcaa actatgcaaa tcattcaaaa gactttttca      3840
     caacgaaaac aatcaactaa cgttctctaa tgccgttaaa cactctatac ccacgacaga      3900
     taatataccg attcacacaa aatcttaccg ttacccattt gtacataaag acgaagttcg      3960
     aaagcaaatt tcaaaaatgc tcgaacagaa catcataaaa agcagccatt ccccttggag      4020
     tgcacccgtc tgggtcgtac ctaagaaaga ggacatcaca ggcgaaaaaa agtggcgttt      4080
     ggtaatcgat tttcgaaaat taaatgaaaa aacgatctct gatagatacc ctattccgaa      4140
     cattgcagat atactagaca gcataggaaa gaccatgtat ttcacaacaa tagacttagc      4200
     aagtggcttt caccaaattc aaatgaaccc acgcgacgca agcaagacgg cattcaccgt      4260
     cgaaaatggg cattatgagt tcacaaggat gcccttcggt ctcaaaaacg cccctgccac      4320
     gttccaacgc gttatggaca acgtcttagg tgatctagtc ggtaacgtct gtctcgtcta      4380
     tctcgacgac ataatagtat tctcaccctc actccaaaaa catatagcag atattaaatc      4440
     cgtattcata aaactccaaa acgcaaatct aaaaatccaa ccgagcaagt gtcacttttt      4500
     aagaaaggaa atcgacttcc tgggacacat cgtcacccag gaaggagtca aaccaaatcc      4560
     acttaagatt caaaccatca aggacttccc ctgcccaaag acaattaggg aaattaagtc      4620
     atttttggga ctattagggt attacaggaa atttattaag gacttcgcaa aaataactaa      4680
     acccatgacg agacagttaa aaggaaggaa atctataaca atagatgagg agtttaaaca      4740
     agcattcgaa acgtcgaaag atcttctttg taatgatccc atactcatat accctgattt      4800
     taataaatca tttacgttga ccacagacgc aagtaactat gcgataggct ctgtgttgtc      4860
     acaaggctca gacactaatg acagacccat atctttcgct agcaggacac tatcggatac      4920
     ggaaatccgc tattctacga tagagaaaga aatgctagct atcatttggt ctgtaggtca      4980
     tttcagacca tacctcttcg ggcgtagatt caaaatagtc acggatcata agccattaac      5040
     ctggttagaa aatctgaaag gccagaatcc aaaactactt cgatggaaaa ctatcctgtc      5100
     cgcttacgac tacgaagttg tatacaaaaa agggtcgcaa aacgtagtcg ctgacgcact      5160
     cagcagaatc gagccaaact tgaacataaa cgaagaccca caaattatac caatcgcttc      5220
     acaaccacta aatcacttca atagtcaaat agtattccgc accggatcaa caacggcaag      5280
     acaaatagaa acaccatttg cccataaaat aagacacata atcacagaac ccgtgcacac      5340
     tttcgattcc gttacaaacg cccttcaaac aatcctgaaa ccgaataaaa cattcgcaat      5400
     atttgcacca gacgatattt tcaaaataat agaagaatcc tataataact atttctttga      5460
     aaacgactta tacaaaattt cccgctgcaa aatacggcta accgaaatca ctaatcccca      5520
     tgaccaggaa aacaaaattc gtgcgtatca ccttaacacc aatcataggg ggatagacga      5580
     aacttataac catttaaaaa gggacattta ttttccgcat ttaaaagaca ttatcacaaa      5640
     aattataaaa aattgcgata cttgcctaat cctcaagtac gatagacatc ctcataaacc      5700
     actgctgcaa accccaaccg caccagaggg accattggcg gtcgtgcata tagacatata      5760
     cttcattaac aatgcttgta acctcacmat tatmgacaaa ttcaccaagc tagcgcaagc      5820
     ctaccccctt agcaatakga attcaatgaa agtcgccgat gccctattac aatttataag      5880
     ccactacggc scaccaaagg aaataatwtt cgaccasggc gcggaatttt cgggcagtct      5940
     attsaacgac ctcttaaccc aattccaaat aacagctcat amaacttcgg ggggaggagt      6000
     gggcaackct wmsgtcgaaa gtgcattcca ccttaaccga actatacaga ataatcatsa      6060
     acaaamgaaa ggaagcwcgc ctagaatgcg ggcatgacca gatactcgca gaagctgttg      6120
     caacatataa caatgcaata cactccagca cttcttatac ccctttcgag ctctttcacg      6180
     gaagaactca catattcaac aaaacaataa cattcaacaa tcaccacgac tatcttaaga      6240
     aattaaacga atttaggaaa gaaatatacc caaaagtaca ggaacattta aactcgacca      6300
     cagaaaaaag attggctaaa ttaaacgagg acagagagac accagtccaa gttgaaccta      6360
     atgatacggt atttagaaaa gaaaaccgta gaaacaagat aactccgaga ttttcattac      6420
     acaaagtagg tagggacaaa ggcgtcacct tcctaacaac taaaggtcaa aagttacaca      6480
     aacaaaaaat tagaaaaata gttaagaaat ttataaaacc cggagcacca gcttaagcaa      6540
     caatactaac accgacacaa ttctcaacgt acttcgaccc gtagtccaga atccttttaa      6600
     taaccaccca gctcttaaag tatcattaga agtcctacga aacaaatcaa acaggtagaa      6660
     accgaaatag atacattctt tccgcacact agaagtaaaa gcggtcttat tatgggctgg      6720
     ggaccatact caaatctacc ccgggaaacc tagatgatac atttatccat ttcaatatat      6780
     agtaatagga taaactataa tatagacaca ctgaactgat agtcccttaa tcagtaaact      6840
     aaaccttatc gctaaatttt tatttaataa ggaacaaata caacataaga aatataataa      6900
     gtaaacaaaa tgtaacgtta gcataagatg aacatattat aaattaagtt ataccctaaa      6960
     cacaacacac atgtttaata ttaagataac catttttgat ataaattgtt aaattcaaat      7020
     atcgtcggag ttcgtggcgc acaccaacaa cacgtcgcct ggctacctga ctccgatccg      7080
     gccattcccc ctctgtggcc ttctcttcgg actggggggg ggggggagga gt              7132
//
ID   Gypsy-20_DBp-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   22-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-305
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 688-688 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 305 BP; 104 A; 84 C; 45 G; 72 T; 0 other;
     taacatgccc tagttaacat ctccctctcc acagccacag ggagagaaca cagaaacggc        60
     aactgtaaaa ctaacgccga tggacaacaa caaaaagatc gccaaaaaag aactctgacg       120
     gacacgcaca attctcgtgc actcatacat attcccctac atacttcttc ataataaaaa       180
     gatcattctt attctgtact ccaagcaaaa cggtcgttta tttgcaagcc ttctttccag       240
     catttgaaaa aagcgatagc catatacgag atctcctcta ctccctcggt tacgagactg       300
     taact                                                                   305
//
ID   Gypsy-20_DEl-I repbase;    DNA;    INV; 6473 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Putative LTR retrotransposon from the Drosophila elegans genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DEl-I.
XX
NM   Gypsy-20_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6473
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 457-457 (2012).
XX
RN   [2]
RP   1-6473
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           446..1798
FT                 /product="Gypsy-20_DEl-I_1p"
FT                 /translation="MSDPLLQYRNRKQYSSDSESESIGQVHAPTPRRKPPV
FT                 PPTDVMDPEQLRSVIQAAVNNALTEQAVQNHIREQGLRQQIEELAGRVAAI
FT                 NTSPATAAEIKTYTAIQIDDNIQCSEPLDAVKCLPEFAGAQETYVSWRQAA
FT                 TAAYHIFRRYDGSSRHYQAVIIIRSKIRGPADAVLSSFGTVLNFDAIISRL
FT                 DFTFSDKRPMHVIEQELGTLRQGGMTLLQYYDEVEKKLTLLTNKVNMSYDA
FT                 SMATILCAKFRDDALRVFISGLKRNLTDVLFSAKPKDMPSALALAQEVESN
FT                 HERYIFATTFARSQEDKDRRQNPKPQDRQQDKPFPQPNQQFGAGKNPHFSK
FT                 PHKAQVHSAPQNNTPEPMVVDSSVSRIVQPTQAQAYQNGRPATSGRSGPIK
FT                 RQRVNHVAQSGEQADKNYSSAASSAAAKVDDDAVEDYDSDAINFLGENPCY
FT                 PSSDEE"
FT   CDS           1741..4851
FT                 /product="Gypsy-20_DEl-I_2p"
FT                 /translation="FGCHQFFRGKSLLPVLRRRVAGASMKFLIDTGASKNF
FT                 IRPYKGLKGVRPVEAPFNIHSIHGATQITQKCLVSIFNIKATFFILSDLST
FT                 FDGIIGLDLLTQAGASLCLKSGSLKWGTEVEEISFHTCADVNFTNVDCSDA
FT                 PPVIKDAFIKMLKSRKRAFADPNEALPYNTSVVATIRTMDEEPIYAKLYPY
FT                 PMGAADFVNKEIQNLLGNGIIQKSVSPYNNPIWVVDKKGTDEMGNKNMRLV
FT                 IDFRKLNERTVPDKYPMPNISMILGNLGKAKYFTTLDLKSGYHQIMLAERD
FT                 REKTSFSVNGGKYEFRRLPFGLKNAASIFQRTIDDILREQIGKFCHVYVDD
FT                 VIIFSENEESHVTHVDWVLKNLYEANMRVSVEKSRFFKKSVSFLGFIVTSN
FT                 GATTDPEKVKAIKDFPEPKSVFEVRSFLGLASYYRCFIKDFAAIARPISEI
FT                 LKGENGTVSRHRSRNIPVQFSEAQQQAFQKLRNILASEDVMLRYPDFKKAF
FT                 DLTTDASAYGIGAVLSQEGRPITMISRTLKDRERNYATNERELLAIIWALA
FT                 KLRHYLYAVKDINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARIFYK
FT                 PGKENLVADALSRQQLNAMDEQEAESCIATIHSELSLTHTIDSTDKPLNCF
FT                 QNQLVLEEARSPLKRSFILFGNKRRHLVSFSCKESLLREIADIIVPNGVNA
FT                 IHCDLHTLAMVQDQLVRQFPATKFWHCKNRVTDIFAVDERREIITAEHNRA
FT                 HRSAQENVKQVLSEYYFPKMAKLASEIVSNCKTCARAKYDRHPKKQELGET
FT                 PIPSHIGEILHIDIYSTDRKYFLTCIDKFSKFAVVQHVHSRTIEDLKPALL
FT                 QLMNYFPKARVIYCDNEPSLKSQTISTLLNNHFGVSIANAPPLHSVSNGQV
FT                 ERFHSTLSELSRCLKIDTGITDTVEIILLATTRYNKSIHTVIDKRPADVVQ
FT                 ANSDGLQTEVREKIKNAQDALRNRENATRQNRVFEVGEKVFVKSNKRLGNK
FT                 LTPLCEERAVEADLGTTVLIKGRVVHKDNLK"
FT   CDS           4966..6471
FT                 /product="Gypsy-20_DEl-I_3p"
FT                 /translation="AYFIGGGIPLDEQKIAKVQFRRFGLIPYFFLSLASAH
FT                 ITDYSQAKYIPIVDGQILVWEEFAFVTHTANLSEYARVVEETDNMIDMFPL
FT                 SHMKKLLSVDTAHLQDLLESLGVHHRVARSLDFLGSALKVVAGTPDAGDLE
FT                 KIRFTEMKLVESSNRQIQINTKIQNQINQLTSTVNQILRSAKNSQVDTGHL
FT                 YETLLARNRMLMMELQNLMLAITLAKINIVSPNILDHEDLKSVWLEEPTNT
FT                 PIGDLLSVSSVKVLQSVNVLHFIIKFPKVKLACKKITIFPVAHSETMLQIT
FT                 ENIIAECGGEIYAIKNCSVSPGATFCRLAESSCAKELHAGGMAYCRTQQSD
FT                 LHPITYVDEGIVIINDRSANVRVDNGTEVWIHGTHLITFDKQAIINETLFI
FT                 NHANAQKRTPGAASSPLLNITANQDVLSLPYLHRLSERNLEFIKEFRDEID
FT                 DNQMYLAAIIVGTICCALICIGLTYQRLSRAKRSAIQIKEVIADLGSTEGG
FT                 HNLKGG"
XX
SQ   Sequence 6473 BP; 2049 A; 1507 C; 1410 G; 1506 T; 1 other;
     ggcgctcaac tagtggtaac agattacccc accgaataaa gctaaagctt ggaaactaaa        60
     agtgacggcg gcgcgggaaa aaacgtagct gcaaaacaac acaaaattca caaaatatgt       120
     aagtgggccc ttcggccaaa acttttatgt cttcagtcaa agttatctat ataattcgga       180
     ccactgtctc aagaaaaaca agcatttaat tctgcccatt taattcttgt aacaacaaaa       240
     aaagaggaaa atcaaataaa taaataaacg agtgcgaagt gaatttttgg agaatctcag       300
     tatttagaat tttataattt acaatttgac agcagcagat aagctaaaag gaaatacgac       360
     ccccaaagtc tttcgacttt gtctttgttt atgcagcgct tttgcttacg tgcacgggtt       420
     tctgtgcagt tgaattcgac tgcccatgag tgatccgctt ctccaatata ggaacagaaa       480
     acaatactca agcgactcag agtccgagag tatagggcaa gtccacgccc caaccccaag       540
     acgcaagccc cccgtccctc ctacagacgt catggatccc gagcaactta ggtccgttat       600
     acaggcagck gttaataatg ccctaacaga acaggccgtt cagaaccaca taagagagca       660
     ggggttaaga caacaaatcg aggagttggc tggcagggtg gcagcaataa atacttcacc       720
     agcaacggcc gcagaaataa aaacatacac ggctattcaa atagatgata atatacaatg       780
     tagcgaacct ttagatgctg taaaatgctt gcccgaattt gcgggtgcac aggaaacata       840
     cgtctcctgg cgacaggcgg ccacggccgc ttaccatatt ttcagacggt atgatggtag       900
     ctcgcgccac taccaggcgg ttatcatcat tagaagtaag attaggggcc ctgccgacgc       960
     cgtgctgtcc tcattcggca cggtactaaa tttcgacgcg ataataagtc gtcttgactt      1020
     cacgttcagt gacaagcgac caatgcatgt cattgaacaa gagctgggaa ccctaagaca      1080
     gggtggcatg acccttctac agtactacga tgaggttgag aaaaaactca ccttattgac      1140
     aaataaagtc aacatgtcgt acgacgcgtc aatggcaaca attttgtgcg ccaaattccg      1200
     cgacgacgct ttacgcgtgt tcatttcagg cctcaagcga aacctcacgg atgtgctctt      1260
     ctcggcaaag ccgaaagaca tgccatcggc cttggccctg gcacaagaag tggaatcgaa      1320
     ccacgaaagg tatattttcg caactacgtt tgcaagaagc caggaggaca aagatcgtcg      1380
     gcaaaatcca aagccacaag atcgtcaaca ggacaagccc ttcccgcagc ctaatcagca      1440
     gtttggtgcc ggtaaaaacc cgcactttag caagccacat aaggcccaag tgcattctgc      1500
     accgcaaaat aatactccgg agccaatggt tgttgactca tccgtttcta gaattgtaca      1560
     accgacccaa gcacaggctt accaaaacgg gagaccggct acgtccggcc gttcaggccc      1620
     tattaaaaga caaagagtta atcatgtcgc tcaaagcggc gagcaggccg acaaaaatta      1680
     ttctagcgca gcctccagtg cagcggcaaa agttgatgac gatgccgttg aagattatga      1740
     ttcggatgcc atcaattttt taggggaaaa tccctgctac ccgtcctcag acgaagagta      1800
     gcgggggctt ccatgaaatt cctcatagac acgggcgcgt ctaaaaactt tattagacct      1860
     tacaaggggc taaaaggcgt ccgcccggta gaagcccctt tcaatattca ttcaatccat      1920
     ggcgcaacac aaataacaca gaaatgcctt gtctcaattt tcaatataaa agcaacattc      1980
     tttattctat cggacctatc aacgttcgat gggataatcg gcctcgacct gttaacacag      2040
     gctggggcat cgctttgctt aaaatctggg agtcttaaat ggggtacgga agtcgaagaa      2100
     atttccttcc atacctgtgc tgatgtcaat tttactaacg tagattgctc tgatgcaccc      2160
     cctgtgatca aagatgcctt tataaaaatg cttaaaagca gaaaaagggc atttgcagac      2220
     cccaatgagg cactaccata taacacttcg gtagtagcca caataagaac aatggatgaa      2280
     gaacctattt atgcaaaact gtatccgtac cccatggggg cggccgattt tgttaacaag      2340
     gaaatccaaa atctattggg caacggcata atccaaaaat cagtgtctcc gtacaacaac      2400
     ccaatatggg tagtggacaa gaagggcact gatgaaatgg gcaacaaaaa catgcgacta      2460
     gtaattgact ttcgcaagct aaatgaaaga acggtacctg acaagtaccc catgccaaac      2520
     atctccatga tattgggaaa cctaggcaag gccaaatatt ttacaacttt ggaccttaag      2580
     tcaggatacc accagatcat gctcgcagag cgtgatcgcg aaaaaacttc cttttcggta      2640
     aacggaggga aatatgaatt tcgcagactc ccttttggtc tgaaaaatgc tgccagcatt      2700
     tttcaaagga caatcgacga cattttgcga gagcaaatcg gcaaattttg tcacgtatac      2760
     gtggatgatg tgattatttt ttctgaaaat gaagaatcac atgtcacaca cgtagattgg      2820
     gttctaaaga acctctacga agcaaacatg agggtgtctg tagaaaaatc acgcttcttt      2880
     aaaaagagcg taagcttctt gggattcata gtcaccagca atggtgcaac aactgaccca      2940
     gagaaggtca aagccattaa ggacttcccg gaaccaaaat ccgtgtttga agtcagatca      3000
     ttccttggcc tggcgagcta ctacagatgt ttcataaagg actttgcagc aatagcaaga      3060
     cccatttcgg aaatcttgaa aggggaaaac ggaacggtta gtagacatag gtcacggaac      3120
     attccggtcc agttctctga ggcgcagcaa caagcgtttc agaagctgcg aaatatcttg      3180
     gcatccgaag acgtcatgct aagatacccc gattttaaaa aagcatttga tctaacgaca      3240
     gatgcatcgg cctatggcat tggcgcggta ttgtcccaag agggtcgtcc tatcacaatg      3300
     atctcaagga cattgaagga cagggaaaga aattatgcta caaatgaaag ggaattgtta      3360
     gctattattt gggcattagc caaattacgg cactatctgt acgcagtaaa agacataaat      3420
     atctttactg atcatcagcc cttgaccttt gcggtctcgg agtcaaatcc gaacgctaaa      3480
     atcaagaggt ggaaggcgcg catcgatgag tcaggtgcgc gtatttttta taagcctggc      3540
     aaagagaact tggtcgcgga cgcgctgtcc agacaacaac tcaatgccat ggatgagcag      3600
     gaagctgaat catgcatagc cacgatacac agcgaactct ccctgaccca caccattgat      3660
     tctacggaca aaccactgaa ttgcttccag aaccaattgg ttctcgaaga ggcgcgctcc      3720
     ccattgaaac gcagcttcat actgtttggg aacaaaaggc gtcacttagt tagcttctct      3780
     tgcaaagaat cattgctcag agaaatcgca gatattatcg ttcctaatgg cgtaaacgcc      3840
     atccattgtg acctacacac gttggccatg gtacaggacc agctggttcg acaatttcca      3900
     gcaacaaaat tctggcactg caaaaaccga gtaacagaca tttttgcagt tgatgagagg      3960
     cgagaaatta tcacagctga gcacaatagg gcccatagat cggcccagga aaatgtgaag      4020
     caagtgctct ccgagtacta cttcccgaag atggcaaaat tggccagcga aatcgtctca      4080
     aactgtaaga catgcgcgag agccaaatac gacagacatc caaaaaaaca ggagctgggt      4140
     gagacaccaa tcccctctca tataggagaa atattgcaca tagacatata ctccaccgac      4200
     aggaaatatt ttctcacttg catcgacaaa ttttcgaaat ttgctgtcgt gcaacacgtc      4260
     cactcaagga ccattgagga tcttaaacca gctttacttc agctgatgaa ttattttcca      4320
     aaagctagag taatctattg cgacaacgaa ccgtcgttga agtcgcagac aatctcaacc      4380
     ttgctcaata atcattttgg cgttagcatt gcaaatgcac cgcctctaca tagtgtttca      4440
     aacgggcagg tagagcggtt ccatagtacc ctatcggaac tcagtcgatg tttaaaaatc      4500
     gacaccggaa taaccgacac cgtggaaata attctattag ccactaccag gtacaacaaa      4560
     tcaatccaca cggtcattga caaaagacca gctgatgttg tgcaggcgaa ctcggacggc      4620
     ttacaaacag aagtccggga aaagataaaa aacgcacagg acgcgctaag aaacagggag      4680
     aacgcgactc ggcagaatag ggtcttcgaa gttggagaaa aagttttcgt aaagtccaac      4740
     aaaaggctag ggaataaact cacacccttg tgtgaggaaa gagctgtaga agcggacctg      4800
     gggaccacgg tcctcattaa ggggagggtg gtccacaagg acaatcttaa atagcacaat      4860
     cagataatgt ccttctttaa ccatttttat tacactttta agccacttgg cgcaaattcg      4920
     tactagccat aagtttcatt gccaccggca tgccttttag tttaagctta ttttattggt      4980
     ggtgggatac ctctcgatga acaaaaaata gctaaagttc aattccgcag gttcggactc      5040
     ataccttatt ttttcctatc cttggcgtcg gctcacataa ctgattattc ccaggccaag      5100
     tatatcccca tcgttgacgg ccaaatacta gtgtgggaag agttcgcgtt cgtcacccac      5160
     acagcgaacc tctcggagta tgcgcgcgtg gtggaagaaa cagacaacat gatagacatg      5220
     tttccactat cccacatgaa aaagcttcta agcgtagata ccgcccacct ccaggacttg      5280
     ttggagtcgt tgggcgttca tcatcgagta gctaggagtc tagatttctt agggtcagcg      5340
     ctaaaggtcg tagcagggac accagacgca ggtgatttag agaaaatcag attcaccgaa      5400
     atgaagctag ttgagtcaag caataggcaa attcaaataa acactaaaat ccaaaatcaa      5460
     attaatcagc taacatcgac cgttaatcaa attctgagat ccgccaaaaa ttcacaagta      5520
     gacactggac acctatatga gacactactt gctagaaaca gaatgttgat gatggaatta      5580
     cagaatttaa tgcttgcaat aacccttgcc aaaattaata ttgttagtcc gaacatttta      5640
     gaccacgaag acttaaaatc agtttggctt gaggaaccca ccaacactcc cataggggac      5700
     cttttgtccg tttcgtccgt gaaggttctg cagtccgtta acgttttaca ttttatcata      5760
     aaatttccca aagtaaaatt agcatgcaag aagataacta tctttccagt cgctcatagt      5820
     gagacaatgc tgcagataac agaaaacatt atagcggaat gcggcggaga aatttacgcc      5880
     attaaaaact gctccgtgtc accgggagcc acattctgcc gtttggcaga gagttcatgc      5940
     gccaaagaac tgcatgctgg tgggatggcg tattgccgaa cacaacagag cgacctgcac      6000
     ccaatcacat acgtggacga agggatcgta atcatcaacg acaggtctgc caatgttcga      6060
     gtggacaatg ggacagaagt ctggatacat ggcactcacc ttatcacctt cgataaacag      6120
     gccataataa atgaaaccct cttcatcaat cacgctaacg cccagaagag aactccaggg      6180
     gcagccagct cccccctgtt gaacatcact gccaaccaag atgttctcag cctcccgtac      6240
     cttcaccgct tgagtgaacg aaacctggag tttatcaagg agttccgaga cgaaattgac      6300
     gacaaccaaa tgtatctcgc agcaattatt gtaggaacaa tatgctgtgc actcatctgc      6360
     attggtctta cttaccagcg acttagtagg gcaaaaagat ctgccatcca aataaaagaa      6420
     gtgattgcag atttaggatc gaccgagggc ggccataact taaaaggggg agt             6473
//
ID   Gypsy-20_DEl-LTR repbase;    DNA;    INV; 449 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.06, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DEl-I;
KW   Gypsy-20_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-449
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3104-3104 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. AG-CT termini.
XX
SQ   Sequence 449 BP; 129 A; 123 C; 97 G; 100 T; 0 other;
     agttaactgt ggccagcaaa accaaagttg ttgaccacag tttacgtaaa catcgcgccg        60
     gccaaactgc tgacacagcg tctggccgga tgctcgtgca tagccggcaa gcactgccca       120
     ttggagtggc cgctatgaag ttcaattatg ttagctttaa gtttcagttc tgattcgact       180
     ttcgaataat aaagagccat cgctcgtaaa cctaactccg accaacagtc gttaactgcg       240
     tataatttat tcactgtctg agtccataga tcagcaggta agaggggcag tcacccctcc       300
     aacgtaatca tcctaattca gcattgggac accttcggcc agccggccag caatcaacag       360
     cggacatacc gttcgcctga gaggaagaaa aggaacttcc tgataccgac ggcgactcat       420
     cacccaccgg atcaacaact aaactaact                                         449
//
ID   Gypsy-20_DMel-I repbase;    DNA;    INV; 5631 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5631
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (15-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   Age is uncertain due to a possible duplication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1884..2417,2421..2795,2799..3071,3151..3423,
FT                 3386..4216,4077..4565,4559..4786,4790..4939,
FT                 4923..5093,5033..5542)
FT                 /product="Gypsy-20_DMel-I_1p"
FT                 /translation="HRFSKRFSSDPNGRKLDSENSFFQKNGHYEYTRMPFG
FT                 LKNAPATFQRCINNLLEDLIYKDCLVYMDDIIVFSTSLEEHLLSLRKVFAK
FT                 LQEASLKLQLDKCEFMKKETEFLGHIVTTEGIKPNPNKIKAIQKFPLPKTN
FT                 KEIKSFLGLCGFYRKFIPNFAKNCQTHNTKIKKRFRYKFRYRIYISPRKIK
FT                 IFLIMSEPILIYPNFEKTFSLTTDASNVALGAVLSQDHKPVCYASRTLNEH
FT                 ELNYSAIEKELLALSGPXNTSGPIFYGRXFQILSDHKPLVWLDNIKEPNMK
FT                 LQMMENKTKRILPDKICTRKRKPCRRRTFTCKNRKLLRRISHFSATIHSSH
FT                 EDNQNHIALTERPINYYNRQIEFIKENSDDIKVIKYFHKTIINIKLNIIKK
FT                 RDFTVFQNAYLEIVSPNNLTKVMRSTKKLINIMTYAQFKEIILKGHKELLH
FT                 PAIEKTISIFKKKFYYPDHQKLIQNIINECEILQNCKNRTTNAKYCKIAKT
FT                 EHRNTKLAFEITPETFNPREKYVMDFYMVDNKQFLSCIDVYSKFASLIEIN
FT                 SRDWFAAKRAILLVFTNMGKPVQIKADKDSAFMCAALQLWLQSEGVKIDIT
FT                 TSKNGISDVERFHKTINEKLRIIHTENNPETKLTKFETILYIYNHKTKHNT
FT                 TARTHADIFTYAGTPAYDTQKNKIDNILKLNESRNEFEVDTRYRQAPLVKT
FT                 KTTNPFRKTGEITQIDDKHYKEKNRGRKITHYKSKYKKKKKINETKYDNNS
FT                 SATPNDQDNPTTINTIKKRTEEEKLLTINQNIKRKRKLMKLNMIIIPAQPQ
FT                 TIKTIQHKHTFLMILYYLLLCSTRXAXGQSLEVNPIQAKNGYLIFNTGSTS
FT                 XPTNYXYHYLSVNXTKTXXTYNNLIKQSEEHEILPQVQYLVETLKREMNGI
FT                 RIAKRSKRGLANFMGTMYKYHVPLDQADKEELELKIYKLSENSGQANELNE
FT                 VIKTVNKGIELINSLSAKNKGDQRLNILLFNLQQFTEYIEDIELGYKLTRL
FT                 GIFNPKLLKHDYLTTINYEKLLLIKTLTWLKTDTNEILIISKGIKFPKELS
FT                 KTPIFSIIPYPDSGQNILIENVQNKFYVQNNQTYLAPLWAYLINSIQDVDM
FT                 SNLLSTPLGLLNQFNTGCRYVKTHKKFEISYVEPNIILTWNLPKNMLNQNC
FT                 INRDIIIEGDNIIKAFNCSIQIDDISISNIMLDYTQTVYVNNNLTKLEALS
FT                 YIQAKDIFETHNKTNNTFRIITITIIIILVVIIMFHYIYKYKNIPKKIIIK
FT                 FKKXSXHSYRTTKYCKQ"
XX
SQ   Sequence 5631 BP; 2338 A; 1015 C; 784 G; 1473 T; 21 other;
     ggcgcagtcg gtggtcctaa acttatagtg accaacaaaa gtaccttcgt gtgtgcttta        60
     acttcaactt tgtggctaat cagtgctaca agaagtaact aatccgccag tcagacagac       120
     agtgctttat aattaaaatc gtttcaacca catcaacttg gtagcccacc atagaggtgt       180
     gaccgctgct agaagtgata aaaattacat tagtgctgca agaacaagac cattaaaggg       240
     taactgaaac cccaggtttt gtgtattaaa taaagacagt gggtagtccg ctttacaaaa       300
     agtgtgaccg ctacgagaag tgaacagaaa caaaccaact acagcgacaa aaaaaattaa       360
     taataaaaaa taaaaaaaca acaatggaac aaccacatca acaagtgcaa ctaatctccg       420
     agaatcatct gaaccaggct cttggtcaga ttcgacaaat accaacattt accggtacaa       480
     cactagaact gagctcgttc ataagaagaa tagagttcat actaaaactc tacccaacaa       540
     ctgacatccg tcagtcacac gttctcttca gtgcgattga agcgcaaatc gaaggtgacg       600
     cccaaagagt accccagctc agcgcagcta acacatggcc ggaattgaag gaagccctaa       660
     tcgcggagtt caagacctaa acatcgttcg aagaactttt aagacgacta tataacacat       720
     aattcaatgg atcagttcgt aagttcatac aagaactaga agcaaaatgt tttattataa       780
     caaataagct agccctagaa aataatgaac taaataatca tatttatata aacgcaatga       840
     acaatacagt aaaagatgta attactaaaa atctcccaga cagactctac atgcaattag       900
     ctaggtttga cataacaaca gttagtaaac taataataaa atgaaaagac aaagagctag       960
     caccagtttc aattcaaaaa tggatacgtc tgaaaatttt catctacatg cctcggacga      1020
     agaaaaagac acaattaatt cataaatatt gttttaaaca atatacaata tatacaatat      1080
     atacaatata taaacatcat aagagcaaac atttttaatt ctccagttaa tttacaagtt      1140
     cacaccatca acggtgcaat aattttaaaa gaagttataa ttttcaaacc cagtaagctt      1200
     tgccccacca aacaagcttt ttatattcat aatttttcag aaaaatatga atgatattag      1260
     gtacagaact cttacaagac gcaaaagccc aaataaattt tggtgaagca agagtaaagt      1320
     taagcaataa caacttccta ataaaataca cagcagaacg agaaggtagc ctagaagaca      1380
     atattgactg cctgagwtgt ctagagccgt catcattcwc gwatgatgat gccacaamtt      1440
     acgcaatagg aaacgaacta aacgaatcaa atgaattcag gcttgaccat ctaaataagg      1500
     aagagtcaaa tgcccttact aaaattcttc acgagtttag ggacatacag tacasagaag      1560
     gcgaaaattt gacmttccaa gtactgtata ccttctcaag matgtcatca aaactaaaca      1620
     tgaagaccca atctatagaa aaccttataa atacccacaa gcctacgaca atgaagtcga      1680
     attacaaatc aaagaaatga ttcaacaagg catcgttcgg aaatcggact caccttattg      1740
     tttacccatc tgcatagtac cgaaaaaagc gatgattccg gtaaaactaa gtttagtaac      1800
     gaaattacta ttgatgacaa atacccaatt ccagttatgg atgaaatact agataagctc      1860
     ggtaggtctc aatatttcac taacatagat ttagcaaaag gttttcatca gatccaaatg      1920
     gacgaaagct cgattcagaa aacagctttt tccaaaaaaa tggtcattac gaatacactc      1980
     gaatgccatt cggattgaag aatgcacctg caacatttca acgttgcatc aacaatctat      2040
     tagaagacct aatttacaaa gattgtttag tttacatgga cgatataata gttttttcca      2100
     cttcattgga agaacacttg ttatctctac gtaaagtatt tgctaaatta caagaagcta      2160
     gtctaaagtt acaactcgac aaatgtgagt ttatgaaaaa agaaacagaa ttcttaggtc      2220
     atattgtaac taccgaaggc ataaagccca acccaaataa aataaaagca atacaaaaat      2280
     tcccattacc taaaactaat aaagaaataa aatcattttt aggactttgc ggcttctatc      2340
     gcaaatttat ccctaatttc gccaaaaatt gccaaaccca taacacaaaa attaaaaaaa      2400
     ggttccgtta taaattctaa agataccgaa tatatatcag ccctcgaaaa attaaaattt      2460
     ttttaatcat gtccgaacca atattaattt atccaaattt cgaaaaaaca ttctctttaa      2520
     ccacagacgc cagcaatgtt gctctaggtg ctgtattatc acaggatcat aaacctgttt      2580
     gctacgctag ccgtactctc aatgaacatg aacttaacta ttcggcaata gaaaaagaac      2640
     ttttagcttt gtctgggcca ckaaatactt caggtcctat cttttatggt cgaamatttc      2700
     agatccttag tgatcataaa cctttagttt ggctcgataa tatcaaagaa ccaaatatga      2760
     aactccaaat gatggaaaat aagactaaac gaatttgatt accagataaa atatgtacca      2820
     ggaaaagaaa accatgtcgc cgacgcactt tcacgtgtaa aaatagaaaa cttctacggc      2880
     gaatctccca cttcagcgct accatacata gtagccatga agataaccaa aatcacattg      2940
     cattaacgga aagaccaatt aattattaca accgacaaat tgaatttatt aaagaaaatt      3000
     ctgatgacat taaagtaata aaatattttc ataaaacaat aataaatatt aagttaaata      3060
     ttataaagaa atgacacccg ataacgcaaa acaatggata aaagagtata tatgcacaaa      3120
     agaaactgta gtatatttta gtgatgataa cgagacttca cagtattcca aaatgcttac      3180
     ttagaaatag tcagtccgaa taatttaaca aaagttatga gatctacaaa aaaattaata      3240
     aatattatga catatgcaca attcaaggaa atcatactta aaggtcataa agagctcttg      3300
     cacccagcaa tagaaaaaac cattagcatt ttcaaaaaaa aattttacta ccctgatcat      3360
     caaaaattaa ttcaaaatat tataaacgaa tgcgaaatat tgcaaaattg caaaaacaga      3420
     acatagaaac accaaattag catttgaaat aactccagaa acatttaacc caagagaaaa      3480
     atacgtaatg gacttttaca tggtagacaa taagcaattc ttatcctgca ttgacgttta      3540
     ttccaaattc gcctctttaa tagaaattaa tagcagagat tggttcgcag ctaagcgagc      3600
     tatactttta gtgtttacca atatgggtaa accagttcaa atcaaggcag ataaagattc      3660
     agcatttatg tgcgcagctt tacagctttg gttacaatca gaaggcgtaa aaattgacat      3720
     aacaaccagc aaaaatggaa tttctgacgt tgagaggttt cataaaacaa taaatgaaaa      3780
     actaaggata attcatacag aaaataaccc agaaactaag ttaaccaaat tcgaaaccat      3840
     actttatata tacaatcata aaacaaagca taacacaact gcaagaactc atgccgatat      3900
     ttttacgtat gcaggaacac ctgcatacga tacccagaag aataaaatag ataacatact      3960
     taagttaaat gaatcacgaa acgaattcga agtagatact agatatagac aagcaccatt      4020
     agtaaaaact aagacaacaa acccatttag aaaaacagga gaaattacac aaatagacga      4080
     taaacactat aaagaaaaga accgaggaag aaaaattact cactataaat caaaatataa      4140
     aaagaaaaag aaaattaatg aaactaaata tgataataat tccagcgcaa ccccaaacga      4200
     tcaagacaat ccaacataaa cacacattct tgatgatcct ttactatttg ttactatgtt      4260
     ctacccggtw tgcccamgga caaagccttg aagtaaaccc aattcaagcc aaaaatggct      4320
     acctaatatt taatactgga tcaacaagct waccaactaa ttacgaktat cattacttat      4380
     ckgtcaataw aacwaaaaca magsaaactt ataataactt aataaaacaa tcagaagaac      4440
     atgaaattct accccaagtt caatatttag tagaaacatt aaaaagagaa atgaatggca      4500
     taagaatagc aaagcgcagc aaacgcggct tagctaattt tatgggcaca atgtataagt      4560
     accattagat caagcagata aagaagaatt agaattaaaa atttacaagt tgtccgaaaa      4620
     tagcggccaa gctaatgaac tcaacgaagt cataaaaaca gtaaataaag gcatagaatt      4680
     aatcaattca ttaagcgcga aaaataaagg tgatcaaaga ttaaatattt tattattcaa      4740
     tttgcaacag tttaccgaat atatagaaga tattgaactt ggatattgaa agttaacaag      4800
     acttggcatt tttaatccta aattactaaa acatgattac ttaacgacta taaattacga      4860
     aaaactttta cttattaaaa ctttaacttg gttaaaaaca gatacaaatg aaatccttat      4920
     aatttccaaa ggaattaagt aaaaccccaa tcttttcaat aattccatat ccagacagtg      4980
     gtcaaaacat tttaatagaa aatgtacaaa ataaatttta tgttcaaaat aatcaaactt      5040
     acttagcacc cctctgggct tacttaatca attcaataca ggatgtagat atgtaaaaac      5100
     tcacaagaaa tttgaaatca gttatgtcga acctaatata atattaacct ggaacttacc      5160
     aaaaaacatg ctcaaccaaa attgcataaa tagagatata ataatagagg gagataacat      5220
     aataaaagct tttaattgtt ctattcaaat cgacgacatc tcaatatcaa acataatgtt      5280
     agactacact caaaccgttt atgtcaataa caatctaact aaattagaag ctctttctta      5340
     tatacaagct aaagatattt ttgaaaccca taataaaaca aataacacat ttcgaataat      5400
     tacaatcact attataataa tcttagttgt cataataatg tttcattata tttataaata      5460
     taagaatata cctaagaaaa ttataatcaa gttcaaaaaa amaagcwcmc actcctatag      5520
     aaccaccaaa tattgtaaac aatgatgtaa tagaaattca aaataatccg agccctattt      5580
     tgtaccctaa attatccgcc taaagacggg ctaatttttt aaggatgggg a               5631
//
ID   Gypsy-20_DMel-LTR repbase;    DNA;    INV; 653 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 24.06, Created)
DT   15-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-653
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (15-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   Age is uncertain due to a possible duplication.
XX
SQ   Sequence 653 BP; 223 A; 168 C; 97 G; 162 T; 3 other;
     agtagcatat gtgccacagt ataacacctg actacatata tttacacaca cacacacaca        60
     cacatacatt accacataag caacagccat acacaaaatc atagaatgcc ttaggatata       120
     agtcmtaaat tcaagtataa cataagaacc ccaattctgg tgacaataac aaatccagcc       180
     tgccctaatg taaacattaa matccgctgc cgaatccgtt attcccacca aagggtcaaa       240
     accgcctacg cagctcaagt tctcggccga tcagtaccca tgagcgatcc actcaagagg       300
     gcacccaatc caacagacat aaacatccgc agccgcattc gcgactccca ccagagggtc       360
     aaaaccgctt acgcagctca aatcctttgg cttatccagt atccatgcgc gatccactca       420
     agagagcgct caatttatag aaatacataa gagagccttt tttagctcaa cacataaaga       480
     agtaaataag tctcagccaa aggtttgcta agcgttcgct tcgcaaccta agattaaatt       540
     taattcattc gctctacgaa taagacgtga attgtctccg cttccacact tgtaatttta       600
     tttgaataaa gattatatat ktttatctaa taaattaccg tggattcgtt att              653
//
ID   Gypsy-20_DMo-I repbase;    DNA;    INV; 6030 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6030
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2948-2948 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 6030 BP; 2638 A; 1026 C; 986 G; 1326 T; 54 other;
     ggcgcagccg gtaggatcct ttttcgtcaa aaaggattca gtgataagma wtcgaaccga        60
     aaaataaata aaggtaaacg gcagaaacaa agctaataaa tataataaca taaatawata       120
     catawatata tacatwwata wawacatttt wcaatsmgwg caskkmaagc ccaactacaa       180
     ataagtgggc aagtgwcack gtgaacaact ccagakcagt gcmgacccaa ctacaaataa       240
     gtgggcwagt gctacgtgaa ctamaaatca gtgcmgatac acaaaatcca amtacaaata       300
     agttggcagt gccattataa acaatttcca acctggcatt gaggaaacta cagagggctc       360
     agagatacga cgaggcaaga atggcaacga acaacgccca aacccctcag gcagagttat       420
     tggaacaact ggccatcagg gagcgccagc tggagcagtt acaacaggca tatgtacagc       480
     tccaggctaa caatggaaac acagcgcaga aagaaaggct gttcaaaaac atcaaccatc       540
     tggcgacgtt taccggcact ggggacataa ctattaactc cttcttcagc agtgtggaac       600
     acttgctagg gagtatagtt gaccctgaac tcaaaaaaga agcgaccaga tcgatatatt       660
     acaagacaat tcaaggacaa gcgaaggatg tcgtcatcaa cataccagcc ccggacgatt       720
     gggaaatgat aaaatcaacg ctaaagctac gctacagacc agacacggag ccgcaccaga       780
     tctaccaacg gatctgtcat ttgaaagtga atacggtgag cgagctggcc atcgagctac       840
     aaaatattaa atataagaca gatgaattaa ttgtatatca taagcatgat aattttatag       900
     atttgagcaa tgtagaaagt cttttagtaa ataccgcaaa ggagatgaca cagggtacct       960
     tattagacaa aatctatgaa gaaagagaat tagggaacat tatgagaatt atgacaagca      1020
     ggaggtttga aaatagctgt atcaggtatc aatataggaa aaaccgagtg aatcagactc      1080
     caatcgaaaa caatcaatca ggtagacgca atcagaacca agcaaataat aactatamct      1140
     acaataggaa taatgttccg ccacaaaata ataattacgg tcaacagaac cagtttaatc      1200
     aaaacaatag gcctcagaga tatcaagaga caccaaggca gcaaaatcct ttcaagggaa      1260
     atcaatcagg acaaagtaga cagactaaca attactatca aggcaataat aatcaacaaa      1320
     cgcagaacca gagatcaggt tccggacaga gtaggaattt cagatcaaat gaggwagtgc      1380
     caatggaaat agacaacgta gaagcacata caacagatac gaagacaatc agtacggacg      1440
     aactgcttct aactacgaac aaaaccaata ctcgaacgat gactacgaac aaaacatgaa      1500
     ccatgcagtt ttttttatga agcagcctcg gaacacttac caatagtaaa aataacaata      1560
     gacaataggg cttacttagc tttggtagat acaggagcaa ctttaagtct agcaaacgaa      1620
     caccttgatt ctttcaaacg wataaaactt aacgacccca taccatatag caccataaca      1680
     ggcagagaag taattaacta tgagatacat accacagccc caagagagtt taatttacct      1740
     agwaatgcta gaatcagatg gaagatagca ccattgaaag gcagaaagta taacttcata      1800
     ataggkatag atctattaaa ctatttgaac acwtttatma atttagaacg aaagataata      1860
     acacttaacc aaaaagaaag ctwttttatc aataatccgt acgtatatga agaaataggt      1920
     acattagaac agacagacac gacgttcgaa aatttacaac tgggacatct aaatacggaa      1980
     gaaagaaaag aaatacaaaa agtaatagaa aaattcgcaa aattattttt tagagagggt      2040
     gacaacctga ctagcacgac agaaatagaa catgagatac gaacaactac ckatgaacag      2100
     ttaaattcca aattatatag ataccctcca aaacatgagg aagaagttag gaaccaaatc      2160
     aaagaaatgg agaggcaagg aataattagg aaaagtaatt ctcgttattc aagccccctc      2220
     atagtaatcc caaagaaaat agataattcg ggaaagagaa aatacagaat tgtaatagat      2280
     tacagaaaac taaacgaaat aacaatagat gacaagtttc cgattccaaa catcgattca      2340
     attttggaca aactcgggag agctcaatac tttacgacgc tagacttagc caaaggctac      2400
     catcaaattt tggttaagga agaagatagg aagaaaacag catttgtaac gccacakggc      2460
     ttgtatgagt ttataagaat gccattcggg ttgaaaaatg ccccggccac ctttcaaaga      2520
     cttatgaacg aaattttaag sgatcacata wacaaaaaat gcgttgtata tctagacgat      2580
     atactaatat ttagcacttc tttgcaagaa cacattcaag caattaccga aattttccaa      2640
     atcttagaag aaaaaaattt aaaaatccag atagataaat gcaattttat gaaaagagaa      2700
     acagaatttt taggacacat tctgacaaag gaaggtatta aaccaaatcc aaataaaata      2760
     gctattatag aaaaattagc attacctcga acagaaaagc agataaaaag ttttctaggt      2820
     ataacgggct attacagaaa attcattaag gactatgcta aagtagcaca accaataaca      2880
     aaatacttaa agaaagatgc gaaaattaat acaaaagacc ccacttatgt agaagcattt      2940
     gaaaaactga aacacctgat cagttcacat cccatactta gattccccaa ctttgataaa      3000
     acttttacac taacaactga cgcatcgaat tatgcaatag gggcagtgtt atcccaagag      3060
     ggtcatccag tttgttttgc atccagaacc cttaataatc atgaaaagaa ttattcggca      3120
     accgataaag agtttttagc aattctatgg agcgttaatt actttagacc ctacttgtat      3180
     ggaagaaagt ttaagatact gaccgaccat caacctataa aatttttaca ctcaaagcat      3240
     aagggaaaag acatttcacc taacatcaaa gatggttatt aaaactagga gagtaccaat      3300
     ttgagattga ttatctaaaa ggaaaagaaa acaaagtagc agattttttg agtagactcc      3360
     aagacaacga ctattcagat aaaggaaaag ataacataca aaacgaaaac aacgacaata      3420
     tatcagatat aaatataata gcaaacatag aagatgaaga agataacacg tcattggcaa      3480
     cagtacattc ggcggaggaa aatgtacaca atcatttttt tataaaggaa gaaatagtca      3540
     ataaatacaa aacacagata ataattacaa attgtaaaac agaggaaacg aaaataatac      3600
     atggcaaaag aatcattttc atagctaaat atgacttccc aacaatgggt gaaattttca      3660
     agaaatatat aggcaaagga aaaattggca tttactcaga actaccgtac catgactaca      3720
     acatagtaca agaaaaatta atagaaatgt tttcaaacga cgagcaaata gaattcataa      3780
     gatgcacact tagggctcag gacattgaat acgagacaga agcagttaaa caaatatcac      3840
     tctaccacgt aagagaaagc atgcattcag gtattcagga gacttacaat caattaaaaa      3900
     acagaattta ctatccaaaa ctattagaat tagtgcaaat ggtggttaac caatgtgact      3960
     tatgcaaaga agttaaatat gataggaaac ccataaaaaa taaattcatg aaaacagaaa      4020
     ccccatctga taagaatcaa gttgtccaca ttgacacata tgtaataaaa aatacacatt      4080
     ttttaacaac agtagacaaa ttttccaagt tcgcagcagc atactcatta agtgacagaa      4140
     atcatttgac attagtagaa caactggaag aacatttcac aaaaatagga aagcctaaca      4200
     aaatcatagc ggataatgag tttaattcat tcagaatcaa agaattatta attcaagaag      4260
     gaatagaatt acatctaact aaaccaaaca gtcacacagg aaattcagac atagaaagac      4320
     tacataactc actagctgaa aaatttaggg tagcttttaa aacagaaaga tcaagtagga      4380
     caataaatca aataatgcag caagctatta gaaactataa tgacagatac cactcaacaa      4440
     ttaaatgcac ccctagcgaa gcccaaaaca gtaaggtaga cccgaagaaa atcaaagaaa      4500
     atatagaaaa cgccaagaaa aaaatgttag agaaaaacaa cagcaacaga gaaaactmtg      4560
     aagaaaaacg agaagaagga tttataaaga actatagggc agtcaggcac aaagaagcmc      4620
     caaagtttaa gaaagctaaa ctaaaaaacg tcgatccaaa aaatattaaa agagcataca      4680
     aatttacaga ggatgttact aatgacaata ctaatactga cgacgatgac aamggttaca      4740
     ggaacactga caacgcaaca aatacttgac cactcataga tacaagaaca gaaaaaatag      4800
     tgacaacggc agatatagta gcacacataa taaacctaaa agacatcgaa gacatamtaa      4860
     atgacttaga gagcaacata aaattactaa acaacaacaa caagcacata ttacagacac      4920
     agctagcaga gacaaaacat aaactataca cactttacac aaaccataga cgtgacaaaa      4980
     gaggactcat taacgtagta ggtagcggtg ccaaatggtt gttcggcaca atggacgaag      5040
     aagacagaaa agcaatagag gaccatttag aaaaatttaa agacgacatg agaaacacgg      5100
     acgaattatt aagtaaacag atttacataa acasgtattt taataacaca atcaattata      5160
     taaaacatct aatcagagaa gataggaaag taatagaaaa ccaagtaaat acaatgaatc      5220
     aagataaaaa tcaagagagc tggwactatg accaacaaat caaaattcaa ctcataaaaa      5280
     ataaaataga gcatttgcaa gacaatattg catccgccag gtataacata atacacccta      5340
     gcattttgac aagcaatgaa actatttawt awwcacaatt gaaattccta cgaatttcat      5400
     ttcagttaag atcaggcaaa taattcccat tcccaataca gaaaagttcg aaatagatca      5460
     gaaaactgag gtagtattta agtacgaaaa tattasttat aagtacgaaa tgaacaaaaa      5520
     actaaaagaa atgaaaaaaa gcaagcattg catattcaaa aakaattgta aactaataaa      5580
     aaaagaagaa wtagaaatat tagaaataga cgaagaaact ataattgtta aaaacacaaa      5640
     taatkaaaaa ttgtatcaaa actgtaataa taagacaatw cacattacaa ataatacttt      5700
     aatacacttt tcgaattgtg caatmggcat tgataataat tatttcacta atacttatga      5760
     gacaaataac gaaaaaatat tatacgaaaa aakacaaata caaaacttta caaagcaaat      5820
     aaccttcgaa agtatattag aaaccaacaa aataaactgg atgagcataa aaaacttaaa      5880
     gacacataaa gatataatct atgtatccaa tgcagtwata awtatactaa tacttttatt      5940
     aataaccttg attacgctaa aacacaaaaa aattaaaatc caactcaata ataatagaat      6000
     tcaggagaat tcttgtccaa aggggggaga                                       6030
//
ID   Gypsy-20_DMo-LTR repbase;    DNA;    INV; 495 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-495
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2947-2947 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 495 BP; 171 A; 89 C; 72 G; 163 T; 0 other;
     agttacgtac aaacccactc cacttccaga acagaatgca aactcaatca ttcaactaaa        60
     ttcaataagt cagcaggtac aagagttatt gaactctata aatgttaagt aaattatgtt       120
     gcgacagagt ttatcaacct ctttattttg caagttacac attcagctaa attcattaag       180
     tcagcagata caagagttat tgaactctat aaatgttaaa gtaaactatg ttgcgacaga       240
     gtttattaat ctctttattt tgcacactaa gtatccggtg tcgcaaccaa aaatgcaatg       300
     ccccaaattc atgtaatgcc gacacaacat atattgtaag acacatttat gtagactaag       360
     cactttatgt aacatttata ttgagtacat ttcgaataaa cgagtgagtt gattctgacc       420
     actgaagaat acacgtcgtg ccgtgaagtt attatttttt tttttttagc aaactacttt       480
     gcagtttact taatt                                                        495
//
ID   Gypsy-20_DTa-I repbase;    DNA;    INV; 5033 BP.
XX
AC   .
XX
DT   26-MAY-2012 (Rel. 17.08, Created)
DT   26-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5033
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1633-1633 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1262
FT                 /product="Gypsy-20_DTa-I_1p"
FT                 /note="Gag protein."
FT                 /translation="MSTPKGSDGEYEEADFIKNPGVGVRWIYARRKDELNS
FT                 LAVEFGFKADGTVEEARKAFANLVSSGSFPQRVWDRLTQLQEQYSSRAPSP
FT                 SPTGKNDEMGKFTESLRVPTGSGVTPIEAPARPRGVHPGMTQAGQMPPVDV
FT                 RSTTSLQEVRSDATPTQRLLPEKMCKWNLRFDGSSDPLTLIAALEEKVMTY
FT                 RINPEEIPRAMSEILEGPAARWFRTSHLQSSSWGTFRKEFLDFFLPPRYFE
FT                 RLEDEIRTRVQRKGEPFKTYLIELRTKMQQAGYREEEELYRAYENMAPEYR
FT                 LYIKRNEFATMKQLTHMATEYESVKQLESTRSGTPGGTSGYDEGSRTRRSP
FT                 NPFRTSDLLHRQDTRLTG"
FT   CDS           join(1321..2940,2919..3893,3734..4813)
FT                 /product="Gypsy-20_DTa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="DRTLPSRLPQPTPRLLLGLWPGRSANHRVLPPECFGK
FT                 RRTSPPELGCGGDGRSNGPTPTRPPLRIHGGLITAAVEVGGKWVDATVDTG
FT                 ASRSFASESFTNMVARAGEVQDVVTRIALADRSCLDVTKLWRTPVTLAGTT
FT                 VLLPMLVMPTMLDRVILGMDFLRAAGTHVRCGQATLDLRPEPREVGDPLLL
FT                 PVLLPRGDERQEALHPVASEVQSGTAGRRGKAVRFVESGVQLGTARQGEAE
FT                 VPDPTPERAVTTPNDARTPTRTDVEGHDEERRLAPLSPRQQGFVDRELALF
FT                 ESLHGVSHVAEHRIVMRDDKPLKQRYYPRNPAMQHVIDTQVEELLRAGAIE
FT                 PSRSPHSAPIVLVKKKAGDWRMCVDYRQLNAHSVPDAYPVPRINHILEKLR
FT                 HARYISTLDLKNGYWQIPMARDSRQYTAFTVPGRGLYQWKVMPFGLHSASA
FT                 TFQRALDSVIGAEMEPVAFAYLDDIIVISATEEQHFANLAEVFRRLRAANL
FT                 RINPKKCTFFKQKLVYLGHVISGEGVQTDPEKVSAINGLKTPTNWVEDTHQ
FT                 LKELRQWIGMASWYRRFVPNFATIVQPVTALLKKGRKWTWGPEQQTALEEI
FT                 RRCLTTAPVLGCPDFDQKFVLQTDASDVGLGAVLSQDIEGQEKVIAYASRR
FT                 LTPAEHNYTTTEKECLAIIWAIRKMRCYLEGYRFEVVTDHLALKWLNSIES
FT                 PSGRIARWALELQQFQFDVRYRRGKLNVVADALSRQPRDVLQGAVEIEGQC
FT                 EWTRKMKEKVRDEPEKFADYTLENGQLYRNMGHRADDEDYFPWKLCVPSSQ
FT                 RARVLYECHDSPTAGHLGVRKTITRLSQRYFWPGMYREPNTTCGAASLARN
FT                 LRPFRPRPPEECFPNRRTLGGPKDDHPTVPEIFLARHVPRAKHHVRRCESC
FT                 QKFKTIQTKAAGRMLTRVVSEPFDILCADFVGPLPRSKQGNSMLLVFHDVF
FT                 SKWVELIPTRKATAAVVQKAFRERILGRVGIPRKFVCDNGTQFTSRALKDY
FT                 FTKLGVEIQYTAPYCPQENPTERTNRTVKTLISQLSEDDQSSWDNMLPEIS
FT                 LAINSSVSDSTGFTPAFLTQGRELRLPAMLYDELTPGSAAVHADPEDKASH
FT                 LQGIFDIVRSNLQRASLEQARHYNLRRREWRPTLGSQVWLRQHPLSKAAEG
FT                 FAAKLAPKYDGPYTVVKFTSPNLVRLQRSGDRRRRIANISQLKPYYAADTA
FT                 DPIEDSTTGPNSPAR"
XX
SQ   Sequence 5033 BP; 1238 A; 1379 C; 1470 G; 946 T; 0 other;
     ttccttacaa gtggcgcccg agcagggaca ccgagactag ctagggattc acctaagtgg        60
     cctaaagacc cactggaaaa gaagagtcac ccggaaagcc gagacgcgac gactgctcta       120
     cccgacgacg ggaagaaatc gaagcaatta aaagaaaatc tgccctggaa gataaaacga       180
     tgagtactcc taagggatcg gatggtgagt acgaagaagc cgattttatt aaaaaccctg       240
     gtgtaggagt ccgctggatt tatgctcgcc ggaaagacga actcaactcc ctcgccgttg       300
     agttcggctt taaagctgat ggtaccgtcg aagaggccag gaaggctttc gccaacctgg       360
     tcagctcagg atccttccca caacgggtgt gggaccgact aacccagctg caggagcagt       420
     atagcagccg ggccccgagc ccatccccaa cggggaaaaa cgacgagatg gggaaattta       480
     cggagtccct ccgtgtcccc accggttccg gcgtcacgcc gatcgaggcc ccagcccgtc       540
     ctcgtggggt acatccaggg atgacacaag ctggccagat gccgccagta gacgttcgct       600
     cgaccacgag cctacaggag gtacggagcg atgcgacccc cactcagcgc ttgctcccgg       660
     agaagatgtg caagtggaac ctgcgattcg atggtagttc ggatccattg acgcttatcg       720
     ccgctctcga ggaaaaggtg atgacgtata ggataaaccc ggaagagatc ccccgggcta       780
     tgtccgaaat cttggagggc ccagcggcgc ggtggttccg cactagccac ctacagtctt       840
     cttcgtgggg aactttccgg aaggaattcc tggatttctt ccttcctccc cgatacttcg       900
     aaagattaga ggacgagatt cggactcgcg tacagaggaa aggagagcct ttcaagacat       960
     acttgatcga gcttaggaca aagatgcagc aggccggata ccgagaggaa gaagagttat      1020
     acagagcata cgaaaacatg gccccagagt accggctgta cattaagcgc aacgagttcg      1080
     cgacgatgaa gcagctgacc cacatggcga ccgagtatga gagcgtcaag caactcgagt      1140
     cgacccgaag tggaacccca ggagggacga gcgggtacga cgagggatcg cgaactcgac      1200
     ggtcaccaaa cccctttcga acctcggacc tattgcaccg acaggacacg cgactcaccg      1260
     gatgatcggg caaggaacct cgcgagtaga cttgcagagg gcctgcggcc gctgcggtga      1320
     gatcggacac ttccgtcgag actgccccaa cccacgccgc gacttctgtt gggattgtgg      1380
     ccgggtagga gtgctaacca tagagtgctg ccgccggaat gcttcgggaa acggaggacg      1440
     tctccgccgg aactcgggtg cggcggagac gggcgaagca acggcccgac cccaaccaga      1500
     cccccgttaa ggatacacgg tgggctcatc acggcagcgg tggaagtcgg aggaaaatgg      1560
     gtggacgcca ccgttgatac cggggcgtcg aggagtttcg ccagcgaaag cttcacaaac      1620
     atggtcgccc gcgcaggcga ggttcaggat gtcgtcacta gaatagcatt ggccgaccgg      1680
     tcatgtctgg atgtgacgaa gttgtggcga actccggtca cattggccgg aaccacggtg      1740
     ctcttaccca tgttggtgat gcctaccatg ttggatcggg tgatacttgg gatggacttc      1800
     ctcagagcgg caggaacgca cgtacgatgc gggcaagcca ccctcgattt gcgccccgaa      1860
     ccccgagaag taggagatcc gttgttactc ccggtactct tgccacgggg ggacgaacga      1920
     caagaagcgc tacaccctgt tgcgtctgaa gtccaatcgg ggactgccgg acgaagagga      1980
     aaagcggtgc gctttgtcga gtctggagtc caattgggga ctgctagaca aggggaagcg      2040
     gaggttcccg accctacgcc ggaacgggcc gtgaccacac caaacgacgc caggacaccc      2100
     actagaacgg atgtggaggg gcacgacgaa gagcgacggt tagcgccttt aagtccgagg      2160
     caacaaggct tcgtcgaccg agaattagct ttgttcgaga gtctccatgg ggtatcccac      2220
     gtcgctgaac accgtatcgt catgcgcgac gacaaacccc tgaagcaaag gtattaccca      2280
     cggaacccgg cgatgcaaca cgtcatcgat acccaagtcg aggagctgct ccgcgcggga      2340
     gccatcgagc cgtccaggag cccgcacagc gcaccaatcg tattggtgaa gaagaaggct      2400
     ggcgactggc gcatgtgcgt cgactatcgg cagttgaacg cacactcggt gcccgacgcc      2460
     tacccggtcc cgagaatcaa tcatatcctg gagaagttgc gtcacgcccg gtacatctcc      2520
     acgttggatt tgaaaaacgg ctattggcaa attcccatgg ctcgggatag tcgtcagtac      2580
     acggccttca ctgtcccggg ccggggattg taccaatgga aggtaatgcc cttcgggtta      2640
     cactccgcca gtgccacgtt ccaacgcgct ctggatagcg ttatcggggc ggagatggag      2700
     ccggtcgctt tcgcgtactt agacgacatt atcgtcatta gcgctacgga ggagcaacac      2760
     ttcgcaaatc tcgccgaagt ctttcgcaga ctccgggcag ccaatttgag gattaatccg      2820
     aaaaagtgca cctttttcaa gcagaaattg gtttacctcg gacacgtgat tagcggcgaa      2880
     ggggttcaga cggatcctga gaaggtgtct gcgattaatg ggttgaagac acccaccaac      2940
     tgaaggaact tcgtcaatgg atcgggatgg catcctggta ccgaaggttc gttcctaact      3000
     tcgcgaccat cgtacaacca gttaccgcgc tactgaagaa aggtcggaag tggacatggg      3060
     gaccggaaca gcaaaccgcc ttggaagaaa ttagaagatg cctgaccacc gcccccgtgt      3120
     tgggttgtcc ggatttcgac caaaagttcg tcttgcaaac agacgcgagt gacgtcggct      3180
     tgggagcggt gttgtctcag gacatcgagg gccaagagaa ggtaatcgcg tacgccagcc      3240
     gtcgactaac tcccgcggaa cataactaca cgacgaccga gaaagagtgt ctggccatca      3300
     tctgggctat caggaagatg cgctgttacc tggagggcta ccgattcgag gtcgttactg      3360
     accatttggc cctcaaatgg ttaaactcta ttgagagccc ttccggccga atagcgcgct      3420
     gggccttgga attgcaacag tttcaattcg acgtgcgcta ccgacgaggg aagttgaatg      3480
     tcgtggccga tgctctctcg cgacagccca gggacgtact tcagggtgcg gtggagatcg      3540
     agggccagtg cgaatggact aggaagatga aagagaaagt acgcgacgag cccgagaagt      3600
     tcgccgatta tacactcgag aacggccaac tctataggaa tatgggtcac agagccgacg      3660
     acgaggacta cttcccgtgg aaactctgtg tgccctcttc ccagagagcc cgtgtcttat      3720
     acgagtgtca tgattcccca accgcaggac acttgggggt ccgaaagacg atcacccgac      3780
     tgtcccagag atatttctgg cccggcatgt accgcgagcc aaacaccacg tgcggcgctg      3840
     cgagtcttgc cagaaattta agaccattca gaccaaggcc gccggaagaa tgttaactcg      3900
     ggtcgtgagc gaacccttcg acattctctg cgctgacttt gtaggcccac ttccccgatc      3960
     aaaacaaggg aactctatgc tcttggtttt ccacgacgtg ttctccaaat gggtagagtt      4020
     gatcccgacc cggaaggcca ccgctgcggt ggtgcagaaa gcgtttcgag aacgcatact      4080
     cggacgggtg ggcatccccc ggaagttcgt gtgcgacaat gggacacagt ttacaagtcg      4140
     ggccctaaaa gactatttca ccaagctcgg cgtggagatc cagtacacgg ccccgtattg      4200
     tccccaggag aatcctaccg aaagaactaa tcgtactgtg aagacgctga tatctcagct      4260
     gtcggaggac gaccaaagct cttgggataa tatgctgccg gagatttccc tcgcaatcaa      4320
     cagtagtgtg tcggactcga cggggtttac tccagcattc ctcactcagg gacgggagct      4380
     acgcctgcct gcgatgctgt acgacgaact cactcctgga tcggcggccg tgcatgcgga      4440
     ccccgaagac aaggcgtcgc atcttcaagg aatcttcgac atcgtacggt cgaaccttca      4500
     acgtgcgtct ctagagcagg caaggcacta taaccttcgg aggcgcgaat ggagacctac      4560
     gctcgggagt caggtatggt tgcgacaaca ccccttatcg aaagcggctg agggattcgc      4620
     cgccaaactt gctcctaagt atgacggccc ctacaccgtc gtgaagttca cctctccgaa      4680
     tctggtacga ctgcagcgct cgggagatcg acggcgacgg atcgccaata tatcgcagct      4740
     taaaccctac tacgcggcgg acaccgccga cccgatcgag gacagcacca ccgggccaaa      4800
     tagcccggca cggtaagcat ctggaaccac ggaataactt taagatccat gcttgtaata      4860
     ggttaagatt aatgagtcct ttgttagcta caccgttagg taggaaggtc ggaaggtggg      4920
     gttatatcaa tacgtcgagt gcgaatagcc gccggaacgg gcgcctatag gtgcaccgtc      4980
     actatcaaga gcgacggacg cctctacatc gcgccgcggt aagaaggggg ggg             5033
//
ID   Gypsy-20_DTa-LTR repbase;    DNA;    INV; 1730 BP.
XX
AC   .
XX
DT   26-MAY-2012 (Rel. 17.08, Created)
DT   26-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1730
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1634-1634 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1730 BP; 373 A; 506 C; 416 G; 435 T; 0 other;
     tgtgacggac ccacctagag ggtgtccgcc acaattaccc atatcatagt atttaagaga        60
     gataccatga agtcaatttg ttattagttt ttaagagaaa ttccatgaat tacgttaaat       120
     aaatagtaat aagttataac taggttcccg ggtggcaacg ccaaccgata tttagccaag       180
     acaaattcag gttccagggt ggcaacgcca accgatattt agccaagaca cctcacatac       240
     tagaaatccc aacctaggat actaaagtag aaaaatacta gaaatcccga aagcgggaaa       300
     aagggaaaag agagaggggc acacaggaaa aggctctctt ctctcgggat cgcggaacgg       360
     gcaagacgtg tgctccgggc tttttccctt cgcaggcaga ggatcgcggg ataggccagc       420
     tcagacgcct aacgcgaacg ttcccggatt tctaatcgcg tgtgttccga cagttcgagg       480
     tagcgaggct ctactcagtg tttcgcgggt gatcgcaagg aggattgtat aagagaagga       540
     cctgtcgagg ttagtacgac taggatcaca tgtggtcaaa gcggtgtagc ggactcaagt       600
     gagggtaatt tgaataaacg gtaaagaata tatgatcgca catctcgacc acgtgttttt       660
     cctttcctaa cctcatttta attgccgttt tgagcccgaa cgcggacacc cctcccgttc       720
     ggcacagtag tcttattcct gttcggggta aaacattatc gtagcaccac tggacctgaa       780
     tgtggacttc tcccattcgg ttcggtagtt ttcctcacct ttcccgtagt tttgggattt       840
     gcgcgcggac ccccgtcccg ccatatccgt tttcctagtc ctctcgcctt tcggtagttt       900
     tcctcacctt tccgtagttt tgggatttgc gcgtggaccc ccgtcccgcc ctttccgtag       960
     ttttttgcgc gtggactccc gtccgccttt ccgtatcata gctcccgctt ttccgtagtt      1020
     tgggatttgc gcgtggaccc cccgtcccgc cttttccgta gttttgggat ttgcgcgtgg      1080
     actcccgtcc cgccttatcc gtagttttgg gatttgcgcg tggactcccg tcccgcctta      1140
     tccacaaccc tagcttccct atccccgccg tagggttgca aggctcgcac gcggacaccc      1200
     gtcccggccg gtcgattgag cctaaccttc tcgtcctctt actacccaac gtactacccc      1260
     agtatccttc ccggctcggc ctcgcccgaa ggtccagccc ggcggatttc ctgcccggcc      1320
     acaagacccc gcgaaatatc tctcccggct cggcctcgcc cgaaggtcca gcccggtgga      1380
     tttcttgtcc cgactcaaga cgcggtactc tacgcccgcg aagtattcct cccggctcgg      1440
     cctcgcccga aggtccagct cggcggattt ttcaccgccg acgcccacaa gatacgctcc      1500
     cggctcggca tcgctcgaag gtccctcagg gaatagggct ctacgcaacc aacgtcgtct      1560
     gcgttttctt cgacgtggat aaagatcttc ggcgaagact ccttcaaaac tacccgttca      1620
     cctgtggaac ggaaccccct agtccggtgt ttcggtgatt tacaaatttc ttgtaaagga      1680
     ctcttggata cgactgagat ttgtaccccg gccgagaaaa catccttaca                 1730
//
ID   Gypsy-20_DWil-I repbase;    DNA;    INV; 6747 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DWil_;
KW   Gypsy-20_DWil-LTR; Gypsy-20_DWil-I.
XX
NM   Gypsy-20_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6747
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           746..2161
FT                 /product="Gypsy-20_DWil-I_1p"
FT                 /translation="MWRDNQKNSDSSDEELLKVIEGNSEQVKDTYTNNQKN
FT                 SDSSDEELLKVIEGKSELVKETHKMPTTEEVMKIVQVAVQTALDHQAAQMQ
FT                 STFTQQLNLEMESLRTQIESLKPVAPEVEVYRNAEIIPGIECKEPLDIVRS
FT                 LPDFDGNQNEYISWRSAASFAYELFRPYRGSSAHYQAVGIIRNKVKGAASS
FT                 TLASYNTVKNVDAIIARLDFTYADKTPIRVIQQKLGTLRQGEQSLSQYYDE
FT                 VEKTLTLLTNKTIMTHEAASANVLNEQFRSDALHSFVSGLKKSLRAVVLPA
FT                 KPKDLPTALALAHEAEVSHDYAAFAASFARATEEKAQGPFEQKNQNFRNNA
FT                 NQNKSSENSQGAYKKTPHYTRVQEKPNNKGKPPQNPGAQAFSTPEPMEVDS
FT                 SSKYKQPTRYSENKSTKSGFRSKKNQQVHFTSQDSPEEEAYQTKAEASALA
FT                 ASDDLSDSEESCNFLGNTPFYRSSREQ"
FT   CDS           2119..5211
FT                 /product="Gypsy-20_DWil-I_2p"
FT                 /translation="FFREHSLLPFITRTVGGKTIKLLIDTGASKNYIRPMA
FT                 VLKFITPAEKPFNVRSIHGTSKVTEKCPIHIFGLKAHFFLINIPEDFDGII
FT                 GFDLLKKVGATINLLNNQIVTKNGSEAINFTRCPQVNFIYIDDTDVPAAVL
FT                 KSFNKMMDERVGAFADPDEALPYNINTVATIRTNGEPVYSRLYPLPMGVTD
FT                 FVNAEVKQLLAHGIIRPSKSPYNNPTWVVDKKGTDENGFHKKRLVIDFRKL
FT                 NQNTTDDKYPIPMISTILSNMGKAQYFTTLDLKSGFHQITLAEKDREKTAF
FT                 SVNNGKYEFCRLPFGLKNAPSIFQRAIDDVLREKISRTCYVYIDDVIIFSE
FT                 TKEDHVRDIEWVLKSLQDAGMRVSQEKSKFFKKSVEYLGFIVSRDGITTSP
FT                 EKVQAIKNFPMPSTLFDLRSFLGLASYYRCFIKDFAKIAGPLTDILKGDNG
FT                 KVSKNMSRKIKIEFSLEQSQTFSKLKDILASEEVFLAYPDYRQPFDLTTDA
FT                 SGDGLGGVLSQKGRPITMISRKLRNNERNFATNERELLAIVWSLKSLRNYL
FT                 YGVRDLNIFTDHQPLTFAVSDKNSNAKLIRWKAYIDGHGAKIIYKPGKENF
FT                 VADALSRQNINALEAPDSESDRATCHSEESLSYTIDVSDKPLNCFRNQIVI
FT                 EQAEFPSVRTFVLFQSKSRHIIRTSNPGSLLQTLQDVINAEVVNAIHCELP
FT                 TLALIQHKLVELYPATKFWYCKHIVTDVPDKSEQKEIVVTEHNRAHRAAQE
FT                 NMKQILQDYFFPNMGKLTTEIAANCKICSVAKYDRHPKKHKLGTTPVPAYA
FT                 GEFLHIDVFSTDKRFFLTCIDKFSKFAIVQPIASRAIVDVKPAILQLVNYF
FT                 ANVKTIYCDNERSINSETIRSLLLNEFGIQIVNAPPLHSTSNGQVERFHST
FT                 LLEIARCDKITTQASDTIDVILLATVKYNRSIHSVLNKKPIEAVHETTVEE
FT                 GLQIAKKIKDAQSKQMEQENRTRIDKKYQRGDKVLVKSNKRLGNKLTPLYK
FT                 EGIVEADIGTKVLIKGREVHKDNLK"
FT   CDS           5351..6745
FT                 /product="Gypsy-20_DWil-I_3p"
FT                 /translation="MTMKITDYTKADFIQILDGDVTVWKEYSYLGHTTNIT
FT                 SYRTYADETRKTIEFFKEDHIKRIILTDIRKIDTLLETMTVHHRGARSLNI
FT                 LGTALKVVAGTPDFDDWEQIKFKQEQLIESENKQVKINNKLQEKLNAITNS
FT                 INQISKTENVNHEHFYETILAKNRMVISDLENLILTTTLAKANLLNPIILD
FT                 DLDVNEMTNKNLTNISVSDLLDVGSIKVFQNFNILYFLIKYPHPESVCKKI
FT                 SLYPVERDNIILDFNNRNVVADCGMELFSVEGCQLAVTTTFCKRSPTNGCT
FT                 QQLVAGTQAHCSSRPGHLEPLIVVDEGMVIINDATMDIIDEVGNEKRVNGX
FT                 YLVTFTGKITINQTTFVNKYDVLRKKPMVSAESQINITRYREHLSLPFLHE
FT                 LSINNLRHITGLRSKIISGPVLSSSVTIGIVVIWFAIYLAIRRLQRRNLVT
FT                 TLQKSLDLQKSGDGLHLSEG"
XX
SQ   Sequence 6747 BP; 2482 A; 1383 C; 1305 G; 1575 T; 2 other;
     ggcgcccaac taaaattaaa aagtgcccaa aacttaaaaa acaattctaa gtaaaataga        60
     attgaaataa aaaaacaaaa aacacaaaaa gtctaaacat tgtagtgaac aaattatcac       120
     tacaaaaata aaggaaacta aaagtgccca aaacttaaaa aacaattcta agtaaaatag       180
     aattgaaata aaaaaaacaa aaaacacaaa aagtctaaac attgtagtga acaaattatc       240
     actacaaaaa taaaggaaac taaaagtgcc caaaacttaa aaaacaattc taagtaaaaa       300
     tagaattgaa ataaaaaaca aaaaacacaa aaaagtttaa acattgtagt gaacaaatta       360
     tcactgcaaa aacaaagaaa aaataaaaaa gaggaaaaaa aaacaacaac atagtcacgt       420
     cactgggctg gtgacggcag cggcgaagaa aaaagaaatt gaagacgaga agcagcaaca       480
     acaaacgaag aaaaaactcc accagaatac cgtcgaccac aatccagcaa taagagggca       540
     tagaaattta tcaacagaaa aatgaaaatg taagtgagat ttttgttgtc taaataaata       600
     aatctgggat tgtgaaaata ttcaataaat cgcttggcat tagaggtggt tgttaaacaa       660
     aaaatttgtg aagttgacat tctctgtttt aattgaatca aaaacatttt acactattaa       720
     acgaaatatt tgttcccgtc tgttcatgtg gagagataac caaaaaaata gcgatagtag       780
     tgacgaagaa ttactaaagg ttatagaagg caacagtgag caagtgaaag atacgtacac       840
     caataatcag aaaaatagtg atagtagtga cgaggagttg ttaaaggtta tagaaggcaa       900
     aagcgagcta gtgaaagaaa cacacaaaat gccaacaacg gaggaagtga tgaaaatagt       960
     gcaagtggca gtgcagactg cgcttgatca ccaagctgca cagatgcagt ctactttcac      1020
     acaacagtta aacctcgaaa tggagtcttt aaggactcag atagaaagtt taaaaccagt      1080
     cgcaccggag gttgaggttt ataggaatgc cgaaatcatc ccaggaatag agtgtaagga      1140
     accattagat attgttagat ccttgccaga tttcgatggc aatcaaaacg aatacatttc      1200
     atggcgctcc gcagcttcct tcgcatacga actatttcga ccttataggg gcagttccgc      1260
     ccactaccag gcagtaggca taatcaggaa taaggttaaa ggtgccgcta gttccactct      1320
     agcatcgtac aacactgtaa aaaatgtcga tgcgatcata gctcgactag acttcaccta      1380
     tgctgacaaa acgcccattc gcgttattca gcaaaagttg ggaaccttac gacaggggga      1440
     acaatcgctg tctcagtact atgacgaggt ggaaaaaaca ttgaccctcc tcactaataa      1500
     aacgataatg acacatgagg cagcgtcagc gaacgtgctt aatgagcagt ttaggtccga      1560
     tgcgctacac tcctttgtgt cggggcttaa gaaatccctc agggcggtag tactaccagc      1620
     aaaacccaaa gatttaccca ctgcgctagc attagcgcac gaagctgaag taagccacga      1680
     ctacgcagcc ttcgctgcaa gctttgcgcg ggctactgag gaaaaagctc agggcccctt      1740
     tgaacaaaag aaccaaaatt ttcgaaacaa tgctaaccag aataagagct cagaaaatag      1800
     ccaaggggca tacaagaaga ctcctcatta tactagagtt caggaaaaac caaataacaa      1860
     agggaagcca ccacaaaatc ctggggctca ggcgttctca acaccagaac ccatggaggt      1920
     tgactcctct tcaaagtata agcaaccaac cagatattcg gaaaataagt ccacaaaatc      1980
     tggattccgc tcgaaaaaga atcagcaggt tcatttcacg tctcaggatt cccctgagga      2040
     agaagcctat cagacaaaag cagaggcgag cgctctggca gctagtgatg acctttcaga      2100
     tagtgaagaa tcttgtaatt ttttagggaa cactcccttc taccgttcat cacgagaaca      2160
     gtaggaggaa aaacaattaa attacttatc gatacggggg cctcaaaaaa ttatattcgt      2220
     ccaatggcgg tactaaaatt catcaccccc gcagaaaaac catttaatgt cagatccata      2280
     catgggacct caaaggtaac ggaaaaatgc ccaatacata tttttggcct taaagcacat      2340
     ttcttcttga taaatatccc ggaagatttc gacggcataa ttggtttcga ccttttaaaa      2400
     aaagtcggag caactatcaa tctgttaaac aaccaaatag ttacaaaaaa tggatctgaa      2460
     gccattaatt ttacccgttg cccacaagta aatttcattt atatcgacga tacagacgtc      2520
     ccggctgctg tacttaagtc tttcaacaag atgatggacg aaagagtagg agcgtttgca      2580
     gaccctgacg aggctctgcc atataacata aatactgtag caactattcg aacaaatggg      2640
     gaaccggtat actccagatt atacccgctc ccaatgggcg ttacggactt tgtcaatgca      2700
     gaagttaaac aacttctagc ccacggcata attcgaccct caaaatctcc ctacaataat      2760
     ccgacctggg tggtcgacaa aaaaggaaca gatgaaaacg gcttccataa aaagaggcta      2820
     gtaattgact ttaggaaact aaaccaaaat actaccgatg acaagtaccc tattccaatg      2880
     atttcaacaa tcttgtcgaa catgggaaag gcccaatatt ttacaacatt ggaccttaaa      2940
     tcgggatttc atcaaataac actagcggaa aaagacaggg agaaaactgc tttttctgtc      3000
     aataatggga agtacgaatt ctgcagactt cccttcggtc tcaagaatgc acccagtatt      3060
     ttccagaggg ccatcgatga cgtccttagg gaaaagataa gtagaacatg ctacgtctat      3120
     atagacgatg ttattatttt ttctgaaaca aaggaagacc atgttaggga cattgaatgg      3180
     gtccttaaaa gccttcagga cgcggggatg cgagtatcac aggaaaaatc caaatttttt      3240
     aaaaaaagtg tggagtatct gggatttatc gtatctaggg atggtatcac aacttcaccc      3300
     gaaaaagttc aggcaatcaa aaattttcca atgccaagta ccctttttga tctcagatca      3360
     tttctcgggc ttgccagcta ttatcgctgc ttcataaaag acttcgcgaa aatcgcaggt      3420
     ccccttacag atattctaaa gggcgataat ggaaaagtta gcaagaacat gtctcggaaa      3480
     ataaaaatcg agtttagttt agaacaatcg cagacattct ccaagctaaa agatatttta      3540
     gcatcagagg aagttttttt agcctaccca gattatcgac aaccattcga tcttaccaca      3600
     gatgcatctg gtgatgggct aggcggtgtc ctttcacaaa aaggcagacc aatcaccatg      3660
     atatcccgta aattacgtaa taacgaaaga aattttgcga ctaacgaaag agagcttctt      3720
     gccatagtgt ggtcactaaa aagcttgaga aactaccttt acggggtaag agacctaaat      3780
     atatttaccg accatcagcc attaaccttc gccgtatcag acaaaaattc gaatgcgaaa      3840
     ctaatacgct ggaaggcata tattgatgga catggcgcaa aaataattta taagccagga      3900
     aaggaaaact tcgtagcaga cgccctttcg cgtcagaaca ttaacgctct cgaagcacca      3960
     gattcggaat ccgatagggc aacctgccat agtgaggagt ctctgtccta cactattgat      4020
     gtatccgata agcccttaaa ttgttttcga aaccagattg tgattgaaca agcagagttt      4080
     ccttcggtaa ggacattcgt tctcttccag agtaagtcca ggcacataat acgcacatca      4140
     aaccccggtt cacttttaca gacactgcaa gatgtaataa atgctgaagt ggtaaacgca      4200
     atacattgcg aactgccaac tcttgccctc attcagcata aattggtcga actgtatccg      4260
     gcaacaaaat tctggtactg caaacacatc gttacagatg taccagacaa atcggaacaa      4320
     aaagaaattg tagtgaccga acataacagg gcgcaccgtg cagcccagga aaacatgaaa      4380
     caaattctgc aagactattt tttcccgaac atgggaaaat tgaccacaga aattgcagcc      4440
     aattgcaaga tctgctctgt cgcaaaatat gacaggcatc caaaaaaaca taagttgggt      4500
     accacaccag taccagctta cgcaggagaa ttcttacaca tcgacgtttt ttccacagat      4560
     aaaagattct tcctgacctg catagataag ttttctaaat ttgcgatagt ccaacctata      4620
     gcatcgagag ccatagttga cgtaaagccg gccattctac agttagtcaa ttactttgct      4680
     aatgttaaga caatatattg cgataatgaa aggtcaataa actctgaaac aataaggtcc      4740
     ctccttttaa atgagtttgg aatacaaatc gtcaacgccc cacccttaca cagtacatct      4800
     aatggccaag tagaaagatt ccacagcacg ttacttgaga tcgcacgatg cgacaaaata      4860
     acaacccaag ctagcgacac tatcgatgtt atattactag caacagtaaa gtataacagg      4920
     tcaatccatt cagtcttgaa caaaaaacca attgaagcag ttcatgaaac tacggtagaa      4980
     gagggattgc aaattgccaa aaagataaaa gacgctcaga gcaaacagat ggaacaggaa      5040
     aacagaacca gaatagataa aaagtaccaa cggggtgaca aagtcttggt aaagtcaaac      5100
     aaacggcttg gtaacaaact tactcctttg tacaaggaag gaattgtaga ggctgacata      5160
     ggaactaaag tccttataaa ggggagggag gtccataagg acaatttaaa atagaacctc      5220
     taaaattgtt tttctaaaat taggtttaca cacttctata actactagag taataagact      5280
     attttataat atcagaaatt acagaacgga ctttatactg atactgacaa tactgaggac      5340
     acacgcgaca atgaccatga aaatcacgga ctataccaaa gcagacttta tacagatact      5400
     ggacggagac gtgacagttt ggaaagagta cagctacctc ggacatacga caaacattac      5460
     ctcgtacagg acatacgcgg acgagaccag gaaaactatt gaattcttta aggaagatca      5520
     tattaaaaga attattttga cagatattag gaaaatcgac acactactag aaacaatgac      5580
     ggttcatcat agaggcgcta gaagcctaaa tattttaggc actgcattga aagtagtggc      5640
     cggaactcct gattttgacg actgggaaca gatcaaattt aaacaagagc aattaataga      5700
     gtcagaaaat aaacaagtca agatcaacaa caaattacag gaaaaactga atgcaataac      5760
     gaactccata aaccaaataa gtaaaacaga aaatgtcaat cacgaacact tttatgaaac      5820
     catcctagca aaaaacagaa tggtcatttc agaccttgaa aatttaattc taacaaccac      5880
     tttggcaaaa gcgaatttgt tgaacccaat aatcctcgat gacttggatg tcaatgaaat      5940
     gactaacaaa aatctcacaa atattagtgt gtcagattta ttagatgtag gtagtattaa      6000
     ggtttttcaa aattttaaca ttttgtactt tttaatcaaa tatcctcacc cagaatctgt      6060
     ctgtaagaaa atcagccttt acccggtaga gcgggataac atcattttag attttaataa      6120
     cagaaacgta gttgctgatt gtggtatgga gctattctca gtcgagggtt gccaattggc      6180
     ggtaaccaca acattctgca aaagatcgcc cacgaatggc tgcacgcaac aattagtagc      6240
     cggaactcaa gcccattgta gctccagacc aggtcacctg gaacccttaa tagttgtgga      6300
     cgagggaatg gttatcatca acgacgccac catggacatc atagacgaag tcggcaacga      6360
     aaaaagggtg aacggcamct acctggtgac attcaccggc aaaattacca tcaaccaaac      6420
     aacgtttgtc aacaagtatg atgtgctcag aaagaagcca atggtgtcag ccgagtcaca      6480
     aatcaacatt acgaggtacc gggaacactt aagcctgcct ttcctccacg aactgagcat      6540
     aaacaatctc cggcatataa ccggactacg ctcaaaaata atatcgggcc ctgtattgag      6600
     cagcagtgtc actattggga tagtcgtaat ttggttcgca atttatctgg ccattcgcag      6660
     actccagaga cgcaacctag taacaactct tcaaaagtct cttgacctac agaagtccgg      6720
     kgacggcctc cacttaagcg agggagg                                          6747
//
ID   Gypsy-20_DWil-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_DWil_;
KW   Gypsy-20_DWil-LTR; Gypsy-20_DWil-I.
XX
NM   Gypsy-20_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 284 BP; 87 A; 55 C; 65 G; 77 T; 0 other;
     agttaacatg gacaaatgaa tatagctaat actgcatttg gcagtggcca cgatcgctgg        60
     gtcagcgatc ccacggtctg ggtaatatga gccggcccgc aagacgttga ccgctgctag       120
     cggcacgagg cgcagtgtca gcattccgat ggccaatgct tagggttctt gggtagttta       180
     tttaataatg tttagttagt tataattcgg actccaagcg cacaaaactg tggcttgtaa       240
     taaatcaaat ataaataaac atataaataa acatttatat aact                        284
//
ID   Gypsy-20_HeAr-I repbase;    DNA;    INV; 5187 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5568-5568 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4224
FT                 /product="Gypsy-20_HeAr-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MESLLSRLVSIPPPQAAVSSNVTPKLIPYDPDDKAAD
FT                 IEDWCALTEVIVENKNLDGVDLLMALTRALKGRAATCLTKLNLKNISWCSI
FT                 KQLLLARFAKPKLIQDHFDEILRFQIEAKETASESALRLWSMIEQIPKAEL
FT                 SEEVITGFVISVLCQKDNLIRRELTSHVVTTRAQLFRILNGISLKRRTDNT
FT                 DGCQDPDVKRPRTTDTRFLGKCHRCGVRGHKQFECKSRKEDQVSKPSDYST
FT                 STNKQDKTITCFSCGKTGHTSPTCPDKKRPGGLANKEVNLCGHDPSRSSLE
FT                 TSSGERFPFLFDSGSSCSLITESLSKRFPGTVRNDLVYLTGLGGNDVKCSS
FT                 QMLSTVTIGDVPVDITFHIVPDSDISVPIIIGRDILDKGFYATIDNNKVVL
FT                 NMKQEANFCINKFNAYFVSEVDTDLVNEDKEALLRILNKYSDYFVDGVPTR
FT                 RVKTGQLEIKLIDPHKVVHRSPYRLAPVEKQVVREKIQDLLDAGIIRESSS
FT                 PFSSPILLVKKKDNTDRMCVDYRELNSNTHPEHYPLPRIEEQIDQLTCANF
FT                 FSSLDMASGFHQIPIHPDSIEMTAFVTPEGQYEYLTMPFGLRNAPSVYQRC
FT                 INKALQNLNDKPLIYMDDVLCYSPDISQGLQRLDDTLYALTDAGFSLNPKK
FT                 CKFMKVKINYLGYSIQAGEIRPNSLKIQALADAPPPKTGTHVRQFIGLASY
FT                 FRKFIPSFTNVIGPLYPLTKLKGPIKWTDKHEDIRSKIVEILTSEPVLTIF
FT                 DPELPVELHTDASADGYGAILIQRKNRLPHVIEYYSKRTSEVESRYHSYEL
FT                 ETLAVVRAVEHFRHYLYGRRFTVYTDCNSLKASKSKVDLTPRVHRWWAILQ
FT                 AYDFDIVYREGRGMEHADYLSRNLQPEEGASSNISPIRKEVKFVELHQGWL
FT                 CVEQKRDSEIQDLINKHNNNDMPDSVARTYDVRDGILYRKVERNKATVWLP
FT                 VVPRSLIWTLINHVHNEIQHLGSDKTLDKLYEQYWFPQMSKSVRQFVDSCI
FT                 VCKASKGPSGAQSVRLHSIPKVPVPWHTIHIDFTGKLSGKSDRKEYCSVII
FT                 DAFSKYVLLEHTASLDATSAVRALEKAVHLFGAPKRVIADQARCYISAEFK
FT                 KFCTEHKISLHFIATGSSRANGQVERVMRTLKSLLTIVENEQNKTWRDELG
FT                 NIQLALNSTKSTVTKYSPTELMFGIRAQSLGMSKISIAQSDEEIKRLDLES
FT                 VRENASNNIEKAALADTRRFNRGRANIKPFTKGDFVFLKTGERNQTKLDKK
FT                 FKGPFIITSVLENDRYELKNINGSNRVYKYAHENLRPVPKGHTGLLEITDS
FT                 LLNEEETVSASDELTQNSNDFGDMLRADSVTASDDSETLTAWSDTLSLYDS
FT                 DTLDVQYEVEVHTEQDRP"
XX
SQ   Sequence 5187 BP; 1470 A; 1082 C; 1207 G; 1428 T; 0 other;
     tcagaagtgg gatcgaagag aggtcatgcc gtggatacgc agccatcaaa aagcgaccct        60
     gcaacgcaac tattgtcaag catggagtcg ctcttatccc ggttggtctc aatcccaccg       120
     ccccaggcag cagtaagttc taatgtgaca ccaaaactca tcccatacga tcctgacgat       180
     aaggccgcag atattgaaga ttggtgtgca ctaaccgaag tcatagtaga gaacaaaaat       240
     ctcgatggtg tcgacttact aatggcactc actagagcac tcaaaggtcg tgccgctacc       300
     tgtttaacca aattaaactt gaagaacata tcctggtgta gtattaaaca attgttattg       360
     gctagatttg ccaaaccgaa actgattcaa gatcattttg atgagatatt gcgatttcaa       420
     atcgaggcta aagaaactgc atctgagtct gcgttgcgct tatggagcat gatcgagcaa       480
     attccaaaag cagaattatc cgaagaggtt attactgggt ttgtcatatc tgttttatgc       540
     cagaaggata acttgatacg tagagagcta acatcccatg tcgttactac tcgcgctcag       600
     ctatttcgaa ttcttaatgg catctcgctg aaacgccgga cggataatac ggacgggtgt       660
     caagaccctg atgtgaagcg accgcggacg acagatacga ggtttcttgg caaatgtcat       720
     cgttgtggcg taaggggtca caaacagttt gaatgcaaat cgcgtaagga agatcaagta       780
     tcgaagcctt cagattattc aacttccacc aacaagcaag acaaaaccat tacctgcttt       840
     tcgtgcggaa agactggaca cacatcacca acttgtccag acaagaagag gcccggtggg       900
     ttagcgaaca aagaagtcaa cctctgcggc catgacccct ccagatcctc gctggagaca       960
     tcttccggtg agcggtttcc ttttctattc gatagtggat catcttgttc actcataact      1020
     gaaagtctct ctaagcggtt tccgggtact gtacgcaacg atttagttta ccttactggt      1080
     cttggcggta acgacgtcaa atgctctagt caaatgttaa gcacagttac gattggtgat      1140
     gttccggttg acattacatt tcacatcgtg cctgattccg atatttctgt gccgattatt      1200
     ataggtagag atattttgga caagggtttt tatgcaacaa ttgataataa caaagttgtg      1260
     cttaatatga aacaggaggc taacttttgc ataaacaaat ttaatgcgta ctttgtttct      1320
     gaggttgaca cggacttagt aaatgaagat aaagaagcac ttttaagaat actgaacaaa      1380
     tattctgatt attttgttga tggtgtacca acaaggcgcg ttaaaacagg gcagttagag      1440
     attaagttga tagaccccca taaagtagtt cataggtcac cttatcgttt agcaccggta      1500
     gaaaaacagg tagttcgtga aaaaatacaa gatcttcttg atgcaggaat tattcgtgag      1560
     agctcctccc ccttttcaag tcctatactt cttgtaaaaa agaaagacaa tacggataga      1620
     atgtgcgtcg actacaggga gcttaactca aacactcatc cagaacatta tccattgcct      1680
     cgcatagagg aacagataga tcaactgact tgcgctaact ttttctcatc acttgatatg      1740
     gctagcggct tccaccagat ccctattcat ccggattcaa ttgaaatgac agcctttgta      1800
     actcctgaag ggcaatatga atacctcact atgccctttg gtttacgtaa cgctccatcc      1860
     gtttatcaaa gatgcatcaa taaagccttg caaaatctca acgacaagcc tctaatttat      1920
     atggatgacg ttctctgcta ttcccctgat atttctcaag gcctgcaacg cctagatgat      1980
     accttgtatg ccttgacaga tgctggtttt tccctaaacc ccaaaaaatg taaattcatg      2040
     aaagttaaaa tcaattatct gggttattca atacaagctg gcgaaattag accaaactca      2100
     cttaagattc aagctttggc agatgcacct cctccaaaaa caggcacaca cgttcgtcag      2160
     tttattggac tcgcgtctta cttcagaaaa tttattccca gttttacaaa tgtcattgga      2220
     cctctttatc ctttaactaa attgaaggga ccgattaaat ggactgacaa acatgaagat      2280
     atccgtagca agatagttga gattctgact tccgaaccag ttttaacaat tttcgaccca      2340
     gaactgcctg ttgaattaca tacagacgcc agcgctgatg gctacggagc aattctcatt      2400
     caaaggaaaa accgcttgcc tcacgtaata gaatattata gcaaacgtac atctgaagta      2460
     gaatctcgct atcactcgta tgaattagag actttagccg tcgtacgagc ggtagaacat      2520
     tttaggcatt acttgtatgg caggcgattc actgtttata cagattgtaa ttcgctaaag      2580
     gcatcaaagt caaaagttga cctcactcca cgtgtacatc gctggtgggc aattttgcaa      2640
     gcgtatgatt ttgacattgt ctatcgcgaa ggtcgcggaa tggaacatgc tgattatctc      2700
     tcccgtaatc tacaacccga agaaggtgcc tcttctaaca tatctcctat taggaaagaa      2760
     gttaaatttg tagaactaca tcaaggttgg ctttgcgtgg aacagaaacg agatagcgaa      2820
     atccaagacc taataaacaa gcacaacaac aatgatatgc ctgattcggt agctcgcacg      2880
     tatgacgtta gagatggtat tttatatagg aaagtcgaac gaaataaagc tactgtgtgg      2940
     ttacctgttg ttccccgatc ccttatttgg acactaatta accatgttca taacgaaata      3000
     caacatctcg gtagtgacaa aacgttagac aaactttatg aacaatattg gtttccccaa      3060
     atgtctaaaa gtgtgcgaca atttgttgat tcgtgcatag tttgtaaagc gtctaaaggg      3120
     ccttcgggag ctcaatcagt tcgcttgcac tctatcccta aagtaccagt gccatggcat      3180
     acgatccata tagatttcac tgggaaattg agtggtaaaa gcgatcgcaa agaatattgc      3240
     tcggttatca tagatgcgtt tagtaaatac gttcttctcg agcatacggc gtcactcgac      3300
     gccactagtg cggtgcgtgc tctagaaaaa gctgtccatc tctttggggc ccctaaacgt      3360
     gttattgcag atcaggctcg atgctatatt agtgccgaat tcaagaaatt ttgtactgag      3420
     cataaaatca gtcttcattt cattgcaaca ggttctagta gagcgaatgg tcaagtagag      3480
     agagtcatga gaacgttgaa aagcttgctt acgatagtag aaaatgaaca gaacaaaaca      3540
     tggcgtgacg agctaggcaa tattcagtta gcgctaaata gtacgaaatc cacagtgact      3600
     aaatactcac caacagaatt aatgttcggg attcgcgcac aatcattggg tatgtctaaa      3660
     atttctatcg cacaatcgga cgaggagatt aaaaggttag atttagaatc cgttagagag      3720
     aatgcgtcaa ataatatcga aaaggctgca ttagcagaca ctcgtcggtt taatcgtggt      3780
     cgcgctaata tcaaaccatt caccaagggt gactttgttt ttctcaaaac cggtgaacga      3840
     aaccaaacta aattagacaa gaagtttaaa gggccattca ttataacatc ggtattagaa      3900
     aatgatcgct acgaactgaa aaatattaac ggttcaaatc gcgtttacaa atatgctcat      3960
     gagaacttgc gtccagtacc taagggacat accggtttac ttgaaatcac tgacagccta      4020
     ttgaatgaag aggagaccgt gtcggcgtcg gatgaattga cacaaaacag taatgatttc      4080
     ggggatatgt tgcgtgcaga ctcggtcact gcttcagatg attctgaaac gctcactgcg      4140
     tggtcagata cgcttagcct ctatgactct gacaccttag atgtacaata tgaagtcgaa      4200
     gttcatactg agcaggatcg tccataacag aaaggttagt tactgtgtta tgtattatga      4260
     atgagtatgt gtgatagatc aaggttgaga gacagtgcag tccggtctat gtttgggatg      4320
     ttgtgttaca caagctggtc gaagggacag tgtcgtccgg tccatgtcgc tttggcggct      4380
     ggtcgaagga cgcactcgtc cggtccatgc ttgtgacaaa ctggtcgaag gggcagtgtc      4440
     gtccggtcca tgtcgctttg gcggctggtc gaagggacgc actcgtccgg tccatgtttg      4500
     tggttgtgtt atacaggctg gtcgaagggg cagtgtcgtc cggtccatgt cgctttggcg      4560
     gctggtcgaa gggacgcact cgtccggtcc atgcttgtga caaactggtc gaaggggcag      4620
     tgtcgtccgg tccatgtcgc tttggcggct ggtcgaaggg acgcactcgt ccggtccatg      4680
     tttgtggttg tgttatacag gctggtcgaa ggggcagtgt cgtccggtcc atgtcgcttt      4740
     ggcggctggt cgaagggacg cactcgtccg gtccatgctt gtgacaaact ggtcgaaggg      4800
     gcagtgtcgt ccggtccatg tcgctttggc ggctggtcga aggacgcact cgtccggtcc      4860
     atgtttgtgg ttttgtgtta tacaactggt cgaagggaca gtgttgtccg gtccatgtcg      4920
     ctatggtggc tggtcgaagg gacgcactcg tccggtccac gttgtggtgt gtaatgttat      4980
     ggtgtatgaa gttatggtgt gtaaagttgt agtatgtaaa gtcgccgtgt gtaaagttgt      5040
     tgtgtgggca aaatgttgct tctgtattat ggtaggcatt atgttcgtca gggtggacga      5100
     gcggatcatt agccttgtac tgttttgatc tttccaggac gccattaaac tactacgtcc      5160
     gaggacggac gattgtcagt ctggccg                                          5187
//
ID   Gypsy-20_HeAr-LTR repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-316
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5598-5598 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 316 BP; 87 A; 62 C; 81 G; 86 T; 0 other;
     tgtcggcgcc gccgtagaga atatgcgaat acgtcggatt agagtgacag ctgaggaagt        60
     gtcactctga cggagcgtca agttgggagc agcgcgggaa ctttgacata aagaaaaagg       120
     cccgcgcgcc ctcaccaggc gaatcgtctc aattcgacgt cgtaatttag tttattgttt       180
     gtttttcacc ataattgtta tttcttacta taaagtgtac tcaagacagt gctggcatta       240
     ttattcatta taaactaagc gtctgcggct agagtaaacg atggagattt ctgatgttgg       300
     taacgaagag ccgaca                                                       316
//
ID   Gypsy-20_LH-I repbase;    DNA;    INV; 5356 BP.
XX
AC   ADOQ01012188;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_LH_;
KW   Gypsy-20_LH-LTR; Gypsy-20_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5356
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012188; Positions   24643   19288.
XX
CC   Positions [2413-2835] - Reverse transcriptase
CC   Positions [3889-4362] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           373..4779
FT                 /product="Gypsy-20_LH-I_1p"
FT                 /translation="MPKTRSMMDREDLEKASLEQLQREAKRYQLPVSNDRD
FT                 LLVDQILTYLERTSHTERTLEMPRETGVMHDPAESSSSRATDADPPNAGAF
FT                 CQAITEMSVMMQQQQQILLQVLQRLAPQKASVPIAQDEGTADPSGLVTLQR
FT                 SSSGNVRSNHSHYSNNGQSRLMSNASALPAGNAVSWLASQIPEFGGSDDEN
FT                 VEVWSNRVDKVAEIHGASDGITLLAASSKLVKFARQWYEFQTGETIESWQA
FT                 LRTDLLKIFKKQVPFYKIMQKLEARKWIPGKKSFDQYAIAKLALMKNLNLP
FT                 TSDAIHILIGGISQGSLRAIALSISDTSIDGFLAKMRTIAEGNTESDRKST
FT                 AVASAVKSVNVSECRNCGKKGHSHKDCRGELTCFFCKSKGHRQFDCPKVKE
FT                 KNGGHPPTAQRSSRATVAAAVTVDDEEEEVVACVSVAACGNLENTEPFAEI
FT                 SSICKKECKIRALVDTGSPVSFVDKGICLEKIRPFIKNFKLPNRKFINLSR
FT                 VRLNVQEVVQTEITLRELGGKKYEIDLYILDEPFDGDIILGREFLDKQKLT
FT                 LIRRSRESADCTSTARLFEQLPLYVNKENAVNLKKDFEIDISNLDVETKNE
FT                 LLSLLNRIEEKKIVPVDDDYEVRVHLKDDFIYAYAPRRFAFAERIQIRKIT
FT                 DDLLERGIIKNSVSPYCARVIPVRKKNGEIRLCVDLRPLNCRVVKQKYPFP
FT                 LIEDCLSRLSGMSIFTLLDLKDGFHQIKVHADSTRYFAFATPDGQFEYVRL
FT                 PFGYSEAPAEFQKRIIQILNPLIRADKVIVYIDDVLIPSRSVRENLDVLAE
FT                 VLMTLKSYRFELNFRKCLFLKKEIEFLGYIISENGMTLSPRHTESVRNYKT
FT                 PSNVHGVQRFLELASYFRKFIKDFALKAKPLYNLLKKDIKFLFDENCIRAF
FT                 EILKKELTSSPVLALYNPALETELHTDASSLGLGAILLQKQKSGTWCPIAF
FT                 FSQATNSAEKNYHSFELEMLAIVRSIERFHLYLYGIPFNVVTDCNALVHAV
FT                 SKANLNPRIARWTLTLQNYSFRVSHRPGTRMAHVDALSRCAAYVHELPLER
FT                 ELEFHQLSDAKIKKICDELEIADNDKFELNDGLRYYKINGNLYFVVPEAME
FT                 ISVIRAHHDDMAHCGLEKTIKGVSQNFWFPSMRRKINSYIENCLTCVMAND
FT                 SVTRFEGETSLYPSASAPFEILHLDHFGPLQESADKFKHILVIVDAFTRFC
FT                 WLVPTRSTSSREVIVNLESLFATFGRPKEIVSDRGTAFTSKEFADVIEKFK
FT                 IKHRKVSVAAPWANGTVERVNRFIKSSLTKMINSPEEWKNSLNTLQYVINN
FT                 TYHAVTKSSPSKLLFGFEQRSHADHELARFTKALVGQDTDLEKDRDASRQA
FT                 ARNAIDSIRAYNKKYRDTRLKKATVYDVGDYVMIRKTKATPGESAKLRPKF
FT                 VGPYAIKKILGNNRYVVQDIPGFNVTAKPLNTILSCDRLKPWIRCSPPDEP
FT                 PSEN"
XX
SQ   Sequence 5356 BP; 1666 A; 1075 C; 1329 G; 1286 T; 0 other;
     gctcagaagt gggattacgg gctcaaaaaa cccatatcga aaatttaaag tcgaacattg        60
     ccgtgtcgtg tcggaaggga ttacaggccc ttagagtcgg agtcgagtcg aataaagtta       120
     gacaaacttt gtcgtaatgg aacatttatt agaacatttt tcggactgaa taagtccgcg       180
     ccgagtcgaa aaagtgacaa aaactcttgt cgtgtcgagt agaagcagtg tacgggcgga       240
     agtaatccgc gtcgagtcga aaaagggcaa aatttgccgt tggaacgtgt cgggtcgatc       300
     aacggatttt tcaaatccgc gttgagctta agaggccgaa gattcctgat tggagtcgtg       360
     ccgggtcata gaatgccgaa aaccagatcc atgatggaca gggaagacct agaaaaggct       420
     tcattagaac agctccagag agaagcgaaa agataccaat taccggtctc aaacgaccgc       480
     gatttattgg tagatcagat tttgacgtac ctggaaagga cgagccatac cgagaggacg       540
     ttggagatgc cgagagagac gggtgtgatg cacgatccag cagagtcgtc ctcgagtcga       600
     gccaccgatg cagatccacc aaacgcagga gctttctgcc aggctatcac agagatgtcg       660
     gtgatgatgc agcagcagca gcagatcttg ctccaggtgt tgcagaggct ggcgccacag       720
     aaagcgagcg taccgatagc ccaggacgag gggacagcag atccgagcgg gctagtaact       780
     ctgcagagat catcatccgg taatgtaaga tcgaaccata gtcattattc aaataacgga       840
     cagagtagat taatgtcgaa tgcgagcgcc ttaccggccg gaaatgcggt aagctggttg       900
     gcctcacaaa taccggaatt tggcgggagt gacgacgaaa atgtcgaagt gtggtcgaat       960
     cgcgtggaca aggtggcgga aatccacggc gcgtccgacg ggataacgtt gctggccgcg      1020
     tccagtaagc tggtaaagtt tgcccgccaa tggtatgaat tccagacggg cgaaacgatt      1080
     gagtcgtggc aggcgttgag aacagactta ctgaaaatat tcaaaaaaca agtgccattt      1140
     tataagataa tgcagaaatt agaggcgcgg aaatggattc cgggaaaaaa atccttcgat      1200
     cagtacgcga tcgcgaagct cgcgcttatg aagaatttga atttgccaac gagtgacgcg      1260
     attcacatac tgataggcgg aatatcgcag ggctcgctaa gggctatagc cctctcgata      1320
     agtgatacct cgatagacgg atttctagcg aagatgcgaa caattgcgga aggaaacact      1380
     gagtcagaca gaaaatccac ggcagtcgcg agtgcggtaa aatccgtgaa tgtttccgag      1440
     tgtagaaact gcggaaaaaa aggacattcg cataaggatt gtcgcggtga actcacgtgt      1500
     ttcttctgca agtccaaagg gcaccgtcag tttgactgcc ctaaggtcaa ggagaaaaac      1560
     ggcgggcatc cgccgacggc tcagcggtct tcaagggcca cggtagcagc cgccgttact      1620
     gttgatgacg aggaagaaga ggtggtggct tgcgtttccg tagccgcgtg tggaaacttg      1680
     gaaaataccg aaccattcgc tgaaatctcg agcatctgca agaaagaatg taaaattcgt      1740
     gcgttagtcg ataccggaag tccagtctca tttgtcgata aagggatttg cttagaaaaa      1800
     atcagaccgt ttattaaaaa ttttaaattg ccgaatagaa aattcattaa tctcagtcgg      1860
     gtacggttaa acgtacaaga agtcgtgcaa acagagataa cattgcgcga acttggcgga      1920
     aaaaaatacg agattgattt gtatatatta gacgaaccgt tcgacggaga cataatcttg      1980
     ggaagagagt ttcttgacaa acaaaaactc accttgatta gacgaagccg tgagtcagca      2040
     gattgcacga gcactgctag gttgtttgaa caactgccgt tatacgtaaa taaggagaat      2100
     gccgttaatc tgaaaaaaga ttttgaaata gatattagta acttagatgt agaaacaaaa      2160
     aacgaattgc tcagcttatt aaatagaata gaagaaaaga aaatcgtacc tgtcgatgac      2220
     gattacgagg tgagagttca tttgaaggat gacttcatct acgcgtatgc gccgcgacgt      2280
     ttcgcatttg cggaacgcat acaaatacga aaaattacgg atgacctcct tgagcgtggc      2340
     atcataaaaa atagcgtatc gccgtattgc gccagggtaa tacctgtgcg aaagaaaaac      2400
     ggagaaatta ggctttgcgt tgatttgagg ccgttaaatt gtcgagtcgt taagcaaaaa      2460
     tatccttttc cgttgatcga ggattgtttg tcgcgcctaa gtggaatgtc gatattcacg      2520
     ctacttgatc ttaaggacgg gttccaccag atcaaggtgc atgccgattc gacgcgttac      2580
     tttgcattcg ctacacccga cggacaattc gagtatgttc gcttaccttt tggctattcg      2640
     gaagcgccag ccgaattcca aaagcgaatc atacagatct tgaatccgct catacgcgct      2700
     gataaggtga tcgtctatat cgatgacgtg ttgattccgt cgaggtcagt gcgagaaaat      2760
     ttggacgtct tggccgaggt gttgatgacc ttaaaaagtt acagatttga attaaatttt      2820
     agaaaatgtt tgttcctcaa aaaggagata gaatttttgg ggtatataat ttcggaaaac      2880
     gggatgacgt tgagtccgag acataccgag tcggtaagaa attataaaac accatcgaac      2940
     gtacatggtg tacagagatt tttagagtta gcatcctatt ttagaaaatt cataaaagat      3000
     tttgcgttga aagctaagcc gttatataat ttgttgaaaa aagatataaa atttttattc      3060
     gacgaaaatt gcattagagc gttcgagata ctgaaaaaag aacttacctc gtcaccggtt      3120
     ctcgcgttgt acaatccagc cctggagacc gaactgcata cggatgcgag cagtctcggc      3180
     ctaggcgcta tattgctgca gaagcagaag agcgggactt ggtgtccaat agcgtttttc      3240
     agccaggcga cgaatagcgc tgaaaaaaat taccatagtt ttgagctcga gatgttggcg      3300
     atagtaaggt cgattgagag atttcatctc tacttatatg gaataccgtt taatgtcgtt      3360
     accgattgca acgccctagt acacgctgta tcaaaagcga atttaaaccc gagaatagca      3420
     cggtggactc ttaccttaca gaactatagt ttccgagtgt cacaccggcc gggtacacga      3480
     atggcgcatg tagatgcact cagccgatgc gcagcgtacg tgcatgaact gccgctagaa      3540
     agggagctcg aatttcatca gctctcagac gctaaaatta aaaaaatatg tgacgaatta      3600
     gaaatcgccg ataacgataa gttcgaacta aatgacggtt tgcgatatta taagataaat      3660
     ggaaatttat attttgtcgt acctgaggcg atggaaatca gtgtgataag agcacatcac      3720
     gacgatatgg cccactgtgg gctagaaaaa acgatcaagg gagtcagtca gaatttctgg      3780
     tttccctcta tgcgtagaaa aattaatagt tatatagaaa attgcctcac ctgcgtaatg      3840
     gcaaacgatt ccgtcacgcg tttcgaggga gagacaagtc tttatccctc agcgtcagcg      3900
     ccgttcgaga tattgcatct cgaccatttc ggaccattac aggaatctgc cgacaaattt      3960
     aaacatattc ttgtaatagt ggatgcgttt actagatttt gctggttggt tccgacgcgg      4020
     tccacgtcgt ctagagaagt catagttaat ttggaaagtt tgttcgcgac gttcggaagg      4080
     ccgaaagaaa tagtttccga tagaggtacg gcctttacct caaaagaatt tgccgatgta      4140
     atagaaaagt ttaaaataaa gcacagaaag gtctcagtag cggccccatg ggccaatggg      4200
     acggtcgaac gcgttaacag gtttattaaa tcatcgctca ccaaaatgat taactcgccg      4260
     gaagaatgga aaaacagttt aaacacacta caatacgtga ttaacaatac atatcacgca      4320
     gtcacgaagt cgagcccgtc gaagctgcta tttggtttcg agcagcgcag ccatgccgat      4380
     cacgagttgg ctcgtttcac caaggccctg gtgggacagg atacagacct ggagaaagat      4440
     agagacgcgt cacgacaggc ggcgcgaaac gcgatagatt cgatccgagc atataataaa      4500
     aaatatcgag atacaagact aaagaaagct actgtttatg acgtaggtga ctacgtcatg      4560
     atccgaaaaa caaaggctac tccgggcgaa agcgcaaaat tgcgcccaaa attcgtaggg      4620
     ccgtacgcaa taaaaaagat tttagggaat aatcgttatg tggttcagga cataccgggc      4680
     tttaacgtaa cagcgaagcc gctcaatacg atattgtctt gcgatcgtct aaagccctgg      4740
     atccgatgta gtcctcccga tgaaccacca agcgaaaatt gatctacaaa ataatttggt      4800
     tattaggtta gtcgttaatt ataagaatta gtaataatga atgttttaag tctagaaaaa      4860
     ttgtagctat taaggtataa aacttaccac agatttatag aagttaaatg tcgaatcgac      4920
     tacaacgaac tgttttactt ctgttcacaa ttacgcacac gaaatgaatt gcgcaacaat      4980
     tgcacatatg agaacttcgg gacgaagtcc agcgccagga cggccgagct gtaagatgca      5040
     agcaatagca tccgatagac ggcgccagcg gacggcagcc ggttgatcga gagcagcgcc      5100
     tcgataaaat agatcctgcg cgcacgcatt cccgctcctc ataatttgtt catattaaat      5160
     tgtaactgat ctaaggatcg agaatattcg aggaagttga cttgcgggag aacggagatc      5220
     gagttctcac tctctatcgc cgaaccagtc gaaacagtcg cacaaatcga aattaataga      5280
     gagacagtcg ggccgaattt attaaatcga aactcagtcg ttttcgcaca gttgtatttt      5340
     ctacataaag actatt                                                      5356
//
ID   Gypsy-20_LH-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   ADOQ01012188;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_LH_;
KW   Gypsy-20_LH-I; Gypsy-20_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-211
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012188; Positions   19287   19077.
XX
SQ   Sequence 211 BP; 77 A; 40 C; 33 G; 61 T; 0 other;
     tgttaaatat cacataaatt cagtgtcgaa tcatttgagt accatcctgc cgttttacca        60
     tttccatcaa agtacaatcg ctaataaatt aaacaaaata accggggtcg cgtctaggac       120
     gtaaccgtcg caatcgtttg aataatcttg gaaataagaa tattcctagt aaaaagtcga       180
     taatcgaaaa atattcgaaa gagtcctttc a                                      211
//
ID   Gypsy-20_LMi-I repbase;    DNA;    INV; 4668 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4668
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..4112
FT                 /product="Gypsy-20_LMi-I_1p"
FT                 /translation="MTSFIEGQKQAAAAAAQQQSTAAQSPATQPAILPSFR
FT                 QYDXKTEDWAEYLAQFRSHVAAHQIQGTVLLPYFLSQVGVNIYRLCVKLFP
FT                 TTRPEQVPFEELVQAITNHYEQTLNVAAARFQFYNCHRQAGQSYRQWVTEL
FT                 QGLTRKCKFRCDCGKYYSDLMIRDVITRNVSDSRIREQILKYSDPSLEQVL
FT                 QIIEYQDTCDFAASSFQDAHTCAVAQDKESVPSRPNTPVVDQHSRQARPRR
FT                 TSCKQPQRQPRGKQANVKSCPKCISKHRRNQCPSRNAICFSCGKQGHVQSV
FT                 CMSLTTAPRQKHLQNSRTRRADSVFAIHSKPAATKTDSSVPVTKDSDDTSL
FT                 QRHANKLFVHLXIAGKTVKFLLDTGATVSLINRATYEMLGTPQLRTVHTLL
FT                 TAYTGQDIPVLGTCSFPAVYGDIHKTVSLLVLESYDSANIFGLDLFDLFGL
FT                 SITGNVLSVTSFDPSERITNLCAEFPELFSDGLGQATNFSAHVTLKDNAQP
FT                 RFCRACPVPFALCDQVAQALTKWQNQGVIAPISASQWASPLVIVKQPSGKL
FT                 RICVDFKRTVNPQTVIDTFPLPHPHELMDRLGAGKYFSKIDLRDAYLQLPL
FT                 DEQSQKFLVINTHMGLFKFLRLPFGCASAPAIFQRYLEQLTKAVPCCSNYL
FT                 DDIVVSGRTAEEHFNNLRALFKVLSEAGLKCNKDKCVFFQTEIEYLGHVIN
FT                 SQGVHPLQSHLQAIRELKAPTNITELQSFLGKISYYIKFIPNAAQLAAPLH
FT                 RLRRKNVKFVWSKECDIAFQKLKDALLSDRCLVHFDPDKPVVLATDASAYG
FT                 IGAVLSHCIGSSDRPIAFASKLLNKAQVNYSQIEKEALAIIYGVTKFHQYL
FT                 YGRKFYLVTDHKPLQSLFHPAKPIRSRTAQKLQRWALVLSSYNYEIIYRPT
FT                 SKHANADTLSRLPVGPDVDFDASEASCCHIDASDSEVLDQFPLDHRKVAQA
FT                 TAADPDLQIMLRYVRTGWPRAVTQIVSPVVRRYFSRQHDLSVLQGVILLRT
FT                 EQDQSRVVIPQSLQCQVLQLLHQGHWGVVRTKQLARRHCTWIGMDTQIERM
FT                 TAHCQACAENQPAPPQRFSEWPTPTAPWERVHLDFAGPFWNTRWLIIVDAY
FT                 SKFPFVVPMNSTTTRSTLQALQSVFCIEGLPELIVTDNGPQFVSREFEQFC
FT                 QANGIRHLTSAPFHPQSNGEAERFVRTFKSQMAKLKYHHTREQALLHFLAS
FT                 YRSQPRNGPSPAELLHGRWYRTLLHLMHPPQTQPLRRIRHSIAQTXLSFSG
FT                 PMAAQALGAWHHHSAAWR"
XX
SQ   Sequence 4668 BP; 1131 A; 1224 C; 1067 G; 1235 T; 11 other;
     actggcgatg aggattacaa tttttccctt tcaggcccaa ttttgcgaga attttgctat        60
     tagtggacat tttgttacgg gtggtgcact acattagctt atacattttt gtgcattgts       120
     ttmcttttgc tcgcattatg gctgtgccac accctgttct tgccacccag ctgctgcagc       180
     taatccattg cttgcgcctc agccacctcc ttgccaaatg atctaacaca aattattcag       240
     tttcagatgc agtcaattca acaactgaca aactaatgac gtctttcatc gaaggccaaa       300
     aacaagctgc agcagccgcc gcacaacagc aatcaaccgc ggcgcaatcg cctgccacac       360
     agcctgcaat attaccatca tttcggcagt atgatgasaa aacagaggac tgggcagaat       420
     acttagcgca attccggagc cacgtagcgg cacatcaaat acaaggtact gtgttgcttc       480
     cttatttctt gtctcaagtg ggagtgaaca tttatcggct ctgtgtcaaa ctcttcccca       540
     caactcgccc ggaacaagtg ccgtttgagg aattagtgca ggcgattact aaccattatg       600
     aacaaacatt gaatgtagca gcagctagat ttcagttcta taattgtcat aggcaggcag       660
     gacaatctta tagacagtgg gtaactgaac tacaaggttt aactaggaag tgtaaatttc       720
     gttgtgactg tggcaagtac tattcagatt taatgatacg ggatgtgatt actaggaatg       780
     tgtcagactc acgcatccgc gaacaaatct taaagtattc tgatccttca cttgaacaag       840
     tgcttcagat tattgagtat caggacacgt gtgactttgc agcaagtagt tttcaagatg       900
     cccatacatg tgctgtagcg caagacaagg aaagtgtgcc gtctcggccc aatacacctg       960
     ttgttgacca gcactcacgc caagcccggc cgcgccgtac ttcctgtaaa cagccacagc      1020
     gccagcctcg cggcaagcaa gctaatgtta agtcctgtcc gaagtgtatt tctaagcata      1080
     gacgaaatca gtgcccttca cgtaatgcaa tttgtttttc ttgtggcaaa caaggacatg      1140
     ttcaaagtgt gtgtatgtca cttacgactg ctccgcggca gaagcacttg caaaattcac      1200
     gcacacgacg tgcagactct gtttttgcta ttcattcaaa gcctgctgcc actaagacag      1260
     actctagtgt tccggtaact aaagattcag acgacacttc tttgcaacgc cacgcaaata      1320
     aactgtttgt acatttgmaa attgctggca aaacagtgaa atttttgctt gatacgggtg      1380
     ccacagtgtc gttaatcaat cgtgccacat atgaaatgct aggcacacct caattgcgaa      1440
     cagtgcacac tttgcttacg gcatatacag gacaagacat accagtgcta ggtacttgta      1500
     gctttcctgc agtgtatgga gatatacaca agacagtttc tcttttggtt cttgaatcct      1560
     atgacagtgc aaatattttt ggtttggatc tgtttgattt gtttggtctt agcatcaccg      1620
     ggaacgttct gtcagtgacg tcattcgacc cgagtgaacg tataactaac ctgtgtgccg      1680
     aatttcctga actcttttcc gacggacttg gacaggcaac taatttttcc gcgcatgtga      1740
     cattaaaaga taatgcgcag ccacgttttt gtagggcatg ccctgttcct tttgcattat      1800
     gcgatcaagt cgcacaggca ctcacaaagt ggcaaaatca aggtgttatt gcgcccattt      1860
     cagcaagcca gtgggcttct cctttagtga ttgtcaaaca accatctggc aaactcagaa      1920
     tttgtgtgga ctttaagcgc actgtgaatc ctcagacagt gattgacact tttccgttgc      1980
     ctcaccctca cgagcttatg gacagattag gagctggcaa atatttttcc aaaattgatc      2040
     ttcgggatgc atatctgcaa cttccgctcg acgagcaatc acagaaattt cttgttatca      2100
     atacacacat gggcctcttc aagtttctca ggttaccgtt cggttgtgcc tctgctccag      2160
     caatctttca aagatacctg gaacaactaa caaaagcagt gccttgttgc tcaaattatc      2220
     tagacgatat tgttgtttct ggccgcacag ctgaagagca tttcaacaat ttacgtgcac      2280
     ttttcaaagt cctatcggaa gctggtctca aatgtaacaa ggacaaatgt gttttctttc      2340
     agactgaaat tgaatattta ggacatgtca tcaattcgca gggtgttcat ccattgcagt      2400
     cacatttgca agctattcgc gagctcaagg ctcccacaaa cattacagaa ttgcaatctt      2460
     tcctgggcaa aatctcatat tatataaaat ttattcctaa cgcagcgcaa ctagcggcac      2520
     cgctgcatcg cctacggcgg aagaatgtta agtttgtttg gtcaaaggag tgtgacattg      2580
     ctttccaaaa gttaaaggac gctttactga gtgatcgttg tcttgtacat tttgatcctg      2640
     acaaacctgt tgtgttagcc actgacgcgt cagcctacgg catcggagct gtcctctcgc      2700
     attgcattgg ctcttcagac agacctatcg cttttgcttc gaaattgttg aacaaagccc      2760
     aggtcaatta ttcgcaaatt gagaaagagg cattagcaat catctatggt gttaccaagt      2820
     tccaccaata tctgtatggt cgcaagtttt acctggtaac tgaccacaag ccgcttcagt      2880
     ccttgttcca ccctgccaag cccatacgta gtcgcacagc acagaagctg caacgttggg      2940
     cgctcgtatt gtcttcctac aattatgaaa ttatctaccg gccgacgtca aaacatgcta      3000
     atgccgatac actgtcacgt cttcctgttg gcccggatgt tgattttgat gcctcagaag      3060
     cttcctgttg ccacatagat gctagtgatt ctgaggtcct tgatcagttt cctctcgatc      3120
     accggaaggt tgcccaagca acagcggcgg acccagatct tcaaatcatg ttgcgctacg      3180
     tccgcacagg gtggcctcgc gcagtgacgc agattgttag cccggtggtt cgacgctact      3240
     tttcgcgcca acatgactta tcagtgttac agggtgtaat tttgcttcgt acggaacagg      3300
     accagtcgcg tgtggtgatc cctcagtcat tgcaatgtca ggtgcttcag ttactgcacc      3360
     aaggtcattg gggtgtggtc cgcaccaaac aactggcgcg cagacattgc acatggatcg      3420
     gtatggacac gcagatagag aggatgacgg ctcattgcca agcttgtgcg gaaaaccaac      3480
     ccgcccctcc tcaacggttc tcagaatggc ccaccccgac cgcgccatgg gagcgcgtgc      3540
     atttagactt tgcgggtcca ttctggaata caagatggct catcattgtg gatgcctaca      3600
     gtaaatttcc tttcgtggtc cccatgaact ctacgactac tcgcagcacc ctccaagccc      3660
     ttcagtctgt tttttgtatc gagggtctac cagaactgat agtgacggac aatggtccac      3720
     agtttgtgtc gagggaattt gaacagtttt gccaagccaa cggtattcgc catctgacca      3780
     gtgctccgtt ccaccctcaa tcaaatggtg aagctgaacg ttttgtgaga acattcaagt      3840
     cacagatggc caagctcaag taccaccaca cgcgtgaaca agctcttctg catttcctcg      3900
     cctcctaccg ctcccagcca cgcaacggac cgtcacctgc ggagttgttg cacggacggt      3960
     ggtaccgcac tctgctgcat ctcatgcacc caccacagac gcagccgctc cgcagaatca      4020
     ggcacagtat tgcgcaaaca cmtctgtctt tttcaggtcc tatggckgcg caggcgttgg      4080
     gagcgtggca ccatcattcg gcagcttggc gctaacatgt ttttattgca gggtgcagat      4140
     ggcgtgcagc gtcgacacag aaaccaaatt cgcccttgtc gacagattcg ctgtcccctc      4200
     ggatggtggc gcccacgcct catctgacgt cgcgggttcg gtcgacttcc cttctcggcc      4260
     ccgagcccat ggagctcgac gcttcgcctc cagcatcacc gcatctgacg acccatcctc      4320
     cattggacgt cgtgggtcaa ccgacgtccg ccatcgcggg ctcatcgtcg cgcgtcgagg      4380
     gtccttccga cgcagcggtc caccaggggc cacctccgca ccggtcgtcg gkatcctgca      4440
     cctgcatctg ttccttctgc gcctgtgtcg gtgggagcac gacctttggt gcgtttccca      4500
     cccggckttt catgccaagc gcaggccgga tggcgggtcg cgaccggtgg ttcagmgctg      4560
     ggcagagatw cgaaccccgg tccctcgwct gctcccgctg ccacaccttc cccccgccgt      4620
     cgttttgccc actacacaac gacggtgaga aggtttgggg gggggggg                   4668
//
ID   Gypsy-20_LMi-LTR repbase;    DNA;    INV; 434 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-434
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 434 BP; 119 A; 114 C; 84 G; 116 T; 1 other;
     tgttgtggca tcactattcg ccacaatgcc agcggtctac acaagttgcc gcaccactag        60
     aaggcgtgat aagtcactct atagtacttt ggccaccggg ggcgcctgca gtctctgtac       120
     ctctttgcct gctcctctag atatgccggt gcaccacagc aatacagaca gtactacagt       180
     tccgatccag ggctcaagag gagtcctaga gagcagcagt ctcttagcac aagctggaac       240
     agtttactat tgcattgcag aactgtataa taattaggaa gaattttgta caccacaagc       300
     acattaaagt taagtattca tttcatctgt caataaatta tgtggactaa tcattctttt       360
     agttacagac catgtccaca tccttgctag tcatggtcca cctcctcmtc ccactgcatc       420
     ccgaagacat aaca                                                         434
//
ID   Gypsy-20_MoPha-I repbase;    DNA;    INV; 5189 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5189
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1162-1162 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1145
FT                 /product="Gypsy-20_MoPha-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MVSRTPTRPSPRDISVEEGTEMPTTRKRAREQTSEST
FT                 MSETAVLQAVLQEMRAIREEQARRESEFAMLLRQREEELSRLRNFQLSPSN
FT                 NRASGDNVLGAASAGDTCGNRARTELGFKLKPDTFDGTVPLREFLSQFLLI
FT                 ARANLWDDASKSVALAASLRGEARTVLESLEDVEVFSFEELKSKLELRFGE
FT                 GILTQNSYSLFTNRKQKSGESLAAFGAELERLSRLAYPECPFSVRDKIACS
FT                 QFISAVSNNFLRRTLQLEGISSLKAAVERAKAIEIIQGANFERKEKFGRNF
FT                 DRFGRNFEREERKDARSVGGEKSEEGGPRKNWRGLKSAAKDKECWACGKTG
FT                 HFRFECPDAKGNAA"
FT   CDS           1118..4468
FT                 /product="Gypsy-20_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSRRKGKRGLVELFGASSTPKGNAPIIFRSNYNLNKD
FT                 YCVYRSLSFNNDNDSYFCYEGMLNEKRCSFKIDTGSDISIVNRKLVKDYGE
FT                 KLETVNCFLRYPTGEKILCKNKILVDILIGKYSLKIPMFVAEIHDDCLLGV
FT                 DFLKKVSLENVFESAFGNFKSKKEKNFNCSRVVSVPSVLRELIEKNSENLV
FT                 DSQKEVFAGLLNEFQDIFSEEIIAGNCDIICHSINVEDSPPIKQVPRRIPY
FT                 HMRDEVYGIIEEMKKHGVIEESQSPWVSPAVLVRKKNGALRFCVDFRKLNA
FT                 VTIKDSFPLPRIDDIFDQLSGNVWFTTLDLKSGYWQVKIRPEDREKTAFSV
FT                 GKGLWQFTVMPFGLCNAPATFQRLMEKILKDMLTKICLVYLDDVIIFGKSF
FT                 EEMLENLSKVFRRIREANLRINPEKCVFFRKNVKYLGHIISAEGVVTDPEK
FT                 ISAVKDWPVPHTKKQLRSFLGFCSYYRKFVKGFSFISKPLYALTEDKVKFS
FT                 WGEECQNAFDELKRVLSFSPMLSFPREEEKFILDTDASNIGIGAVLSQKQD
FT                 GKERVIAYFSRVLNKAERNYCVTRRELLAIVEAIKAFRHYLLGQKFLIRTD
FT                 HVSLRWLLSFRDLEGQLARWLERLQQFEFEIVFRKGQFHGNADGLSRRHCE
FT                 SQGCRYCAKIEENCARESRKTITLARITLAEENLEEWQREQKEDPSLSVIF
FT                 RGKETGVRPLRTEVSDVSTRIYLLYWDVINLKNGVLYKSWYAPNLKSSFLQ
FT                 LLVPRKRVKEILEKAHDSLSGGHFGVNKTLEKIRKRFYWASCKQDVEDWCK
FT                 SCEVCVARKGPLGKGKSPLQIFNVGTPFERVQMDILGPFPITSSGNKYLLV
FT                 VVDCFTKWVEAFPLRNIRAKTVAEVFVNQIVSRHGTPFEVHTDQGRNFESK
FT                 LFTELMELLGIRKTRTTALHPQSDGQVERQHQTITNYLAKYISSNQKDWDR
FT                 WIPMFLLAYRTSKHEATGVTPAELYFARDLRLPLDLLRGKPPESCKEDPHT
FT                 AEGFVKDFQRKMEGFHASVKERLDIRSSRVKSRYDRRARHILFQEGQKVWF
FT                 FNPRRVKGKAPKLQSDWEGPYFIVRKLSEVVYCIQKTPKHRRKIVHSDRLA
FT                 PFYERKLVR"
XX
SQ   Sequence 5189 BP; 1473 A; 848 C; 1322 G; 1546 T; 0 other;
     ttttgggggc tcgtccggga tcggacgagc ggatatcgga acgagcttta aggagagaga        60
     gggagagagt ccggatggtt tcgaggaccc cgacacgtcc gagcccgcga gatatttccg       120
     ttgaggaggg aaccgaaatg cccactacaa ggaaaagggc tcgagagcag acttctgaat       180
     ctacgatgtc ggagacggcg gtactgcaag ccgttctcca ggagatgcgt gcgatacgtg       240
     aggagcaagc acgaagggaa tcggaatttg caatgttgtt gcggcagaga gaagaagagc       300
     tttctcgttt acgaaatttc cagctaagtc cttctaataa tagagcctcg ggcgataatg       360
     tattgggggc cgcgtccgcg ggggacacgt gcgggaatcg tgcgcgaacg gaattgggtt       420
     tcaaattgaa gcctgacact tttgacggga cggttccgct gcgggagttc ctctctcaat       480
     ttctcctaat cgcgcgcgcg aacctttggg acgacgcgtc gaaatctgta gctttggccg       540
     cgagtttaag gggggaagcg cgaacagttt tagaatcgtt agaggacgta gaggttttta       600
     gttttgaaga attaaaatca aagctcgagt tgcgttttgg ggagggaatt cttactcaaa       660
     attcttattc tctttttacc aatagaaaac aaaaatctgg ggaaagcctg gctgcttttg       720
     gagctgagtt ggaaaggctt tcgcgtttag catatccgga gtgtcctttt tcggtgcggg       780
     acaagatcgc atgttcgcaa tttatttccg ccgtttccaa taattttctt agaagaactc       840
     tccagctgga agggatttct tctttgaaag cggccgtgga gagagccaaa gctatcgaaa       900
     tcattcaggg ggcgaatttt gaaagaaaag aaaaattcgg gagaaatttt gatcgttttg       960
     ggaggaattt tgagagggag gagaggaagg acgcgcggag tgttgggggt gagaaatcgg      1020
     aggaaggggg gccccgaaaa aattggcgtg gtctcaaatc tgcagccaaa gataaagaat      1080
     gttgggcgtg tggaaaaaca ggacatttcc gttttgaatg tcccgacgca aagggaaacg      1140
     cggcttagtt gagctttttg gggcgagttc aactccgaag ggtaatgccc cgattatttt      1200
     tcgttctaat tataatttga ataaagatta ttgtgtttat cgttctctta gttttaataa      1260
     tgataatgat tcttattttt gttatgaagg aatgcttaat gaaaaacgtt gctcctttaa      1320
     gattgatacg ggctctgaca tctctattgt aaatagaaaa ttagtgaaag attatggaga      1380
     aaagttggaa acggtaaatt gttttttgag atatcctacc ggagaaaaga ttctttgcaa      1440
     aaataaaatt ttagttgata ttcttattgg taaatattct ttgaagattc ctatgttcgt      1500
     ggcggaaatt catgacgatt gtttactagg ggttgacttt cttaaaaagg ttagtttaga      1560
     aaatgttttt gaatccgcct tcggaaattt taaatcaaaa aaagaaaaga attttaattg      1620
     ttctcgtgtt gtttctgtcc cttctgtctt aagggagctc attgaaaaaa attctgaaaa      1680
     tcttgttgat tctcagaagg aagtttttgc tggtttattg aatgaatttc aggatatatt      1740
     ttctgaagag ataattgcag gaaattgtga tattatttgt cattctataa atgttgaaga      1800
     ttctcccccc ataaaacagg ttccccgacg tattccttat catatgagag acgaagttta      1860
     tggaataata gaggagatga aaaaacatgg cgtaatagag gaatctcaaa gtccttgggt      1920
     ttcccctgcg gtgttagtta ggaaaaaaaa tggagcattg agattttgtg tggacttccg      1980
     aaaattgaat gcggttacga ttaaagactc ctttcctctt cctcggatcg atgacatttt      2040
     tgatcaactc tcaggtaatg tttggtttac tacgcttgat ttgaaaagtg gttactggca      2100
     ggttaaaatt cgtccggagg atagggaaaa aactgctttc tctgttggta aagggctttg      2160
     gcaatttact gtaatgccct ttggattatg taatgccccc gcaacttttc agcgcctaat      2220
     ggaaaaaatt ttaaaagaca tgttaacgaa aatttgttta gtttatcttg atgacgtgat      2280
     tatttttgga aaaagttttg aagaaatgtt agagaatctt agtaaagtct ttcggcgaat      2340
     tcgggaagca aatttaagaa ttaatccgga gaaatgtgtt tttttcagaa aaaatgttaa      2400
     atatctgggc catataattt ctgccgaggg ggtagttaca gatccggaaa agatttccgc      2460
     agtaaaagac tggccagttc cgcatactaa gaagcaattg cgtagcttct taggtttttg      2520
     ttcgtattat cgcaaattcg ttaaaggttt ttcttttatt tcaaaacctc tttatgcatt      2580
     aacggaagat aaagttaaat tttcttgggg agaagaatgt caaaatgctt ttgacgaatt      2640
     gaaacgcgtg ttatcttttt ctcctatgct ttcttttccg cgggaggagg agaaattcat      2700
     tttagatacc gatgcttcta atatcggtat tggtgcagtt ctttcccaga aacaggatgg      2760
     aaaggaacga gttatagcct attttagtcg cgttttgaat aaagccgaga ggaattattg      2820
     cgttacgcgt cgagaacttt tggcgatagt tgaagcaatc aaagctttcc gtcattacct      2880
     cttgggacaa aaatttttga ttcgtacaga tcacgtttcc cttagatggc ttttgtcttt      2940
     cagagatctt gaaggacagc tcgcgcgttg gttggagaga ctccaacaat ttgaatttga      3000
     aattgttttt cggaaaggac agtttcacgg aaatgccgat ggactgtcta gacgtcactg      3060
     tgaatctcaa ggttgtagat attgtgctaa gatcgaagaa aattgtgctc gagagtcgag      3120
     gaaaactatt accttggctc gtattacctt ggctgaagaa aatttagaag aatggcaaag      3180
     ggaacagaaa gaggatccta gtttgtcggt aatttttcgc ggtaaggaaa caggagtacg      3240
     tcctttacgc acggaagttt cggatgtttc tacccgtatt tacttgttgt attgggacgt      3300
     tataaatctt aagaacggtg tcctttataa gagttggtat gctccaaatt tgaaatctag      3360
     cttccttcaa ttattagttc cacgtaaacg agtcaaggaa attttagaga aagcccatga      3420
     ttctttgtcg ggaggacatt tcggggtgaa taagaccttg gagaaaatta ggaagcggtt      3480
     ttactgggct tcatgtaaac aagatgtaga ggactggtgt aaatcctgtg aagtgtgtgt      3540
     ggcaagaaag ggccccttgg gaaagggaaa gtctcctttg caaatcttca atgttggaac      3600
     tccgttcgaa agagttcaaa tggatattct tggtcctttt cccattactt cttctggaaa      3660
     taagtatttg cttgttgtag tcgactgttt taccaaatgg gtagaagctt ttcccttgag      3720
     aaatattaga gcaaaaacag tggcggaggt ttttgttaat caaattgttt ccaggcatgg      3780
     gacacctttc gaagttcata cggatcaggg aaggaatttc gagtccaagc tttttactga      3840
     actcatggaa cttctcggaa ttagaaagac aagaactact gccttgcatc ctcaatcgga      3900
     tggtcaggtt gaaagacagc atcaaaccat tactaattat ttggcgaagt atatttcttc      3960
     aaatcagaag gattgggatc gttggattcc tatgtttctt ttggcctata gaacctcaaa      4020
     gcatgaggct actggagtga ctccggcaga gttgtatttt gcgcgagatc ttagattgcc      4080
     tttggatttg ttacgaggga aaccgcctga atcttgtaag gaagaccctc atactgcgga      4140
     aggtttcgtt aaggattttc aacgaaaaat ggagggattt catgcgagtg ttaaggaaag      4200
     attagatatt cgatcttcac gtgttaagtc tcgctatgat cgcagagcta gacatatttt      4260
     atttcaggag gggcagaagg tctggttctt caatccccga agagttaagg ggaaggctcc      4320
     taaattacaa agtgattggg agggacctta ttttattgtt aggaaattga gcgaagtagt      4380
     ttattgtatt cagaaaactc cgaaacatag aagaaagata gttcattcag ataggttagc      4440
     tcctttttat gagaggaaat tggtgcgata ggtgagtcgg agcccggaat agaaaataaa      4500
     aaaaggaaac gagacgttga caaaaaagga attgtttttt tttttttttt tttttggaaa      4560
     ttggagaagt ttgttgcttg ttgttttatt ttcttttcag gaaaagaaaa aaaaattacg      4620
     aaacgagaga tgctttacaa gctttcctgg aaagtgagcg aaatcctttc gacgggggat      4680
     caatttcttt tctttgtgat taaatgaaga ctgcctcacc cacggttttt gagccgtggt      4740
     tttcccgtgg ggcgaagggc aaatgccgag gcagggacta gaggagtcct ttcaggacga      4800
     cgggtccacg gtggctaccc ccctcttgtc cgaagaggaa cggcgacgtc ggttaaagcg      4860
     tggagggcag cgtttggatc aaatccagta gacgagaacc tagaggagtg gagttcactc      4920
     aggagtcggc ccagggagag ggagatcgtc tcttcctcag agaatgccga atagtggttc      4980
     taaaaggact tttggaaagg atggaggtcc tggatttccc tgaagacaat taggacttat      5040
     ttaggagcgg cgctcggtaa cctgggacaa agctcaggga gagcaggagg ccgtcctgga      5100
     acttttgtgt cctaatcggg gaaacggaag actgccttgg tactaccctt tcggattgtc      5160
     gggacgacaa tcttgaagag agagggtag                                        5189
//
ID   Gypsy-20_MoPha-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-228
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1184-1184 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 228 BP; 48 A; 47 C; 57 G; 76 T; 0 other;
     tgttacgccc gcgctgctgt acgattactg agaaggccgc gtggcgttcc ttgacgacgg        60
     gctgctattt acaaacaagt gcctttgcga ctagattccg agctgtcaaa ctgttcggac       120
     gtatttcttg caattctatc actgtgttct tgtatttgtg ttacattaaa gagccgtgtg       180
     agttttcagt ggtgttacaa tttatttcaa tcgggagtgc gtgtaaca                    228
//
ID   Gypsy-20_MSe-I repbase;    DNA;    INV; 4796 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4796
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 897-897 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..4794
FT                 /product="Gypsy-20_MSe-I_1p"
FT                 /note="gag, reverse transcriptase, ribonuclease H,
FT                 and integrase."
FT                 /translation="MPRTRSQTDSIESSAESDSNNMATANESPSASRAPFV
FT                 DGNAPSSSSQPVMMTEQQLLRLVQLLQLQPPTTSCTSPSPALSRGNFAKCT
FT                 ARFDGAKDSDVVAFIDAIKVYKECVSMEDSIALRGLPMLLTGLAATWWQGI
FT                 KASVENWSNAIDLLKQTYGPRLPPHRIYREIFSKEQGEETTDIFICRVRAL
FT                 IAQLPPGSLKEDVQLDMVYGLLNTRIREKIPRSGFKSYSELLTQARRLEDL
FT                 YDEGRPKQRKSDTSHVGVLSPTAAPSSTPNIRAKATKPRPLCNYCKKFGHV
FT                 KAECSRLRDQTKKPTSGESLTSPPTXTPIVCFGCGAPGVIRANCATCRGRS
FT                 SSDTPVFQSVAAVSSACPPRSRPVMCVDIYGETGKLLLDTGAKQSIASVSL
FT                 RAFLEKCNHKFVKVHYNFKFANGVTSSNIVETALVDVTVQGVVVPTQFVVL
FT                 PGATESLLGIDFIRDAGMVFDFARDRWSIRDRSGTFVLEYEDQATRLVCSA
FT                 VDLLREDEGTLLKPHERIELSTLLEDNKDIFERGGAATTFAIHRIDTGNHL
FT                 PISVPPYRVTPSKKEIMRKEIDKMLEEGVIEESDSEWTSPVVLVPKKNGTV
FT                 RFCVDYRSLNRITRADKYPLPRIDELLLSTKRDSVMSSIDLRSGYWQIEVA
FT                 PEDRDKTAFVSPFGTFRFRRMPFGLRNSPSTFQRLIDRFRSGLRDITVICY
FT                 LDDILIISENFETHMKDLQQVFDRLRLFGLRANREKCVFGRSRLTYLGHVI
FT                 SPSGIEPDPEKVRAVMEMKTPSSLKELRTFLQTCSWFRKFIPDFSGIARPL
FT                 TELTKKNRKWTWETDQMQSFELLKEKLSSAPILRQPNFEEPFVLRTDASAY
FT                 ALGAVLMQGSEAKEERPIEYASRLLTSAERNYNTTEREALAVVWALEKFRS
FT                 YIEGAEVRVATDHQPLKWLMSLKNPSGRLARWAMKIQGHNLDIQYCPGKAN
FT                 VVADTLSRPAGVALTDEQECSIFPIVLDLPRKGPEEVRAAQLADPECKKII
FT                 DDFEADNDECASRWADRGYYMSQGVLYRCDPDGEAEEPLLVLPESWQEDVL
FT                 KQLHDAPTAGHLGVERTLRKLMERYYFRGMRSYVTNYVKKCEACSKFKPSN
FT                 LKPAGLLQTPVPHQRFEVLAMDLFGPLPEGDKGERWIFLVEDTATRWVELF
FT                 ALVEATAENCAKILIEEVFMRYGVPRRVVSDNGSQFVSAVMQKAMYAMGVK
FT                 QSLVPAYHPEANPAERKNRDLKQRLSLLLGPEHRKWPEMLSQTRFALNTAY
FT                 NSGTGETAAYLMFARNLRSPIDVDHDMRTIVSQENYVPQITPYLRSFGHVL
FT                 QRVKYRVEEQQDIRKEAADKHRRPAPDINIGDLVLVDTHVLSNASRGFTAK
FT                 FAPRRSGPYVVSEVASPSSYVIKDSRGQVIGKYHASALTPYQGTRSVVQRV
FT                 RRGRPARSHPGRDCDLEGE"
XX
SQ   Sequence 4796 BP; 1241 A; 1035 C; 1274 G; 1242 T; 4 other;
     agtggctgcc caacgttcgg cttacgaact tgccgttatt gttattatta tattattatt        60
     ttacaatcgg gttacctatt tagttggaca aagtggacaa aagtgtttgt gtgtgtgtga       120
     ttgtgtgagc tagaagttac ctgtgaataa cttgttcgtg tttatgtgcc tacgagtggc       180
     ctacgtgacc gcgagctscg aagcgatcgc gcgcgagccg cgacatcaaa gggtgccgcc       240
     gctgsgatat acckcgccga cgacgacttc gggtgggatt tgtgcctact acaactaagg       300
     gacgataagt ataccatgtt atactcgttt ctagacagtt atttcgcggt tgtgaatatt       360
     gaacgcgttt gtgtttatgg acaatgcaaa taagacattt cgtctgtgtt caagtatttc       420
     aaaattagct cagactgtta cactactatt tgtcgaactt tgaactgttt ttaaataata       480
     ttgttggggt gtgtgatgcc gcgaacgcgt agtcaaacgg acagtataga atcgagcgcg       540
     gaatcggaca gtaataatat ggcgaccgcg aacgaatcgc cgtcggcaag ccgcgcgccg       600
     tttgtagacg gtaacgcgcc ttcctcgtca agtcaaccgg ttatgatgac ggagcagcaa       660
     ctgctgcggc tcgttcagtt gcttcagtta caaccaccta cgacttcttg tacttcacct       720
     tcgcctgcgc tttcccgggg caactttgcc aagtgcacgg cgcgtttcga cggcgctaag       780
     gacagcgacg ttgtagcgtt tatcgacgct attaaggtct acaaggagtg cgtcagcatg       840
     gaggacagca ttgctctgcg tggattaccc atgcttctca ctgggttggc cgcgacctgg       900
     tggcaaggta ttaaagcttc cgtcgagaat tggtccaatg ctattgacct gctaaagcag       960
     acgtatggac cgcgtcttcc gccgcacaga atttatcgag aaatcttctc taaggaacaa      1020
     ggggaagaga ccactgacat ctttatttgc agggtgaggg ccctgattgc tcagctgcca      1080
     cccggtagcc tgaaggaaga tgtgcagctg gatatggtat atgggctgct aaatactaga      1140
     atcagggaga aaattccccg aagcggattt aaatcgtatt ctgaattgtt gacccaggca      1200
     agacgtctgg aagacttata cgatgaaggc cgtcctaagc agcgcaagtc tgacacgtcg      1260
     catgttggtg tattatcgcc aaccgccgcg cccagttcta cgcctaatat acgtgctaag      1320
     gctacaaaac cacgaccgct ttgtaattat tgcaaaaagt ttgggcatgt aaaggctgag      1380
     tgttctcgac tacgtgacca gacgaagaag ccgacgtcag gggagagttt aacatcgccg      1440
     ccgacgwcga cgccgatcgt gtgctttggg tgtggtgctc cgggcgtgat tcgcgctaac      1500
     tgcgcgactt gcagaggaag aagctcgtcc gacactccgg ttttccaatc tgtggctgca      1560
     gtatcatcgg cgtgtccgcc gcgcagtaga cccgtcatgt gtgttgacat ttacggagag      1620
     acgggaaagt tattgttgga tactggtgca aagcaatcta tcgcgagtgt tagcttaaga      1680
     gcgtttttag aaaagtgtaa tcataaattt gttaaagtgc attataactt taaatttgct      1740
     aacggtgtga cgagtagtaa tattgttgaa actgcgttag ttgatgtaac ggtacaggga      1800
     gtagtggtgc cgacgcagtt cgtggtgttg cccggtgcaa cagagtcgtt gttaggtatt      1860
     gattttataa gggacgctgg tatggtattt gactttgcta gagatcgttg gtcaatacgc      1920
     gataggtctg gtacttttgt actggagtac gaggatcagg cgacccgcct cgtttgttcg      1980
     gccgtggact tgttgcgtga ggatgaggga acgctattga aacctcatga gcgtatagag      2040
     ctctcgactc ttctagaaga taacaaggat atctttgagc gagggggagc cgctaccact      2100
     tttgcaatcc acaggattga tactggcaat cacctaccga tttccgtccc gccataccgt      2160
     gtaacacctt ccaagaaaga aatcatgagg aaagagatag acaagatgtt agaagaagga      2220
     gtgatagaag aatcagactc tgagtggacg tcaccagttg tgttggtgcc taagaaaaat      2280
     ggtactgtac ggttctgtgt ggactatagg agtcttaatc gaatcacacg tgccgacaaa      2340
     taccctttgc ctcgaattga cgagcttttg ttgtccacaa agagagacag tgtgatgtca      2400
     agtattgact tgagatctgg atattggcag attgaggtag cacctgagga ccgcgacaag      2460
     acagctttcg tgtccccgtt tgggacattt cgttttcgac gcatgccatt cgggcttcgg      2520
     aattccccgt cgacgtttca aagactgatc gatcgttttc gctctggcct cagagatatt      2580
     actgtgatat gttacctcga tgacatttta attatttctg aaaattttga gactcacatg      2640
     aaagatttac aacaggtatt tgatcgtctg aggttattcg gccttagggc caatcgcgaa      2700
     aaatgcgtat tcggaagaag tcgcctgaca tacttaggcc atgtcatttc gccatcagga      2760
     attgaaccag atcctgagaa agttcgagcg gtgatggaga tgaagacgcc atcatcattg      2820
     aaggaactcc ggacttttct ccagacatgt tcttggttta ggaaatttat tcctgatttt      2880
     tcgggcatag cccgcccttt aacagaactc accaagaaga accgtaaatg gacttgggag      2940
     acggatcaaa tgcagtcgtt cgaactactc aaagaaaagc tttcgtctgc tcctatcctt      3000
     aggcaaccta attttgaaga gccgtttgtg ctacgtactg atgcaagcgc atatgctttg      3060
     ggtgctgttt tgatgcaagg atcggaggca aaagaagaga gacccattga gtacgcgagt      3120
     aggctactaa cgtcagctga acgcaattac aacaccaccg agcgtgaagc tctagctgta      3180
     gtgtgggcgt tggaaaaatt ccgtagctat atcgaaggcg ccgaggtacg cgtcgctacg      3240
     gatcatcagc cactgaagtg gttgatgtcg ctgaagaatc ctagtggacg actggctcga      3300
     tgggccatga agattcaagg tcacaattta gatattcagt attgtcctgg aaaagctaat      3360
     gtagtagctg acacgctgag tagacctgct ggagtcgcgt taacagatga acaggaatgc      3420
     tcaatttttc ctatagtatt agacttacct cgtaaaggac ctgaggaggt ccgcgctgct      3480
     cagcttgctg atcccgaatg taagaagatt atagatgact tcgaagctga taatgatgaa      3540
     tgcgcgtcgc gatgggctga tcgaggttac tatatgtcgc aaggtgtgct gtatcggtgt      3600
     gatcctgatg gagaagctga agagccgtta ttggtcttac ctgaatcctg gcaagaagat      3660
     gtgttgaagc aactgcatga tgctccaact gctggacact taggtgtaga gcgtacctta      3720
     cgcaagttga tggagcgata ttatttccgt ggtatgcgct cgtatgtgac caactacgtt      3780
     aagaagtgtg aagcttgctc taaatttaaa ccatccaatc tgaagccggc aggactctta      3840
     caaacacccg taccgcacca aagatttgaa gtccttgcga tggatttatt tggacccctt      3900
     cccgagggtg ataaaggaga acggtggatt tttctcgtcg aagacaccgc cactagatgg      3960
     gtggagttat ttgcattagt tgaggctacc gcagaaaatt gcgcgaaaat tctcatcgaa      4020
     gaggttttta tgagatatgg agtgccacgg cgagttgtgt ccgataacgg atcgcaattt      4080
     gtgtccgctg tgatgcaaaa ggccatgtac gccatgggcg tcaaacaaag cctagtacca      4140
     gcatatcacc cggaggcgaa tccagccgaa aggaaaaacc gcgacctgaa gcagaggctg      4200
     tcactgttgt tgggaccaga gcatcgcaag tggccagaaa tgctctcaca aacccgtttc      4260
     gctctcaaca ctgcctataa tagtggtaca ggagagacag cagcatattt aatgtttgct      4320
     cgcaatttac gatcgcctat cgacgtggac catgatatga ggaccattgt gtcccaagaa      4380
     aattatgtac cgcaaattac gccgtactta cgtagtttcg gtcacgtact tcaacgtgtg      4440
     aagtatcgag tggaggaaca acaggatatc cgcaaggaag cagctgacaa acatcgacga      4500
     cctgctcctg atattaacat aggagaccta gtcctggtgg atacccacgt cctcagcaac      4560
     gctagtaggg gctttaccgc gaaattcgca cctcgacgga gtggtccgta tgtcgtgtca      4620
     gaggtggcga gtccttcgtc ttacgtgatt aaagatagtc gcggacaagt aatcggcaaa      4680
     taccatgcca gcgctcttac tccgtatcaa ggtacgagat ctgtcgtaca aagggtgcgt      4740
     aggggaagac cggccaggtc acacccgggg cgggattgtg acctggaggg ggaggt          4796
//
ID   Gypsy-20_MSe-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-279
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 946-946 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 279 BP; 55 A; 84 C; 63 G; 69 T; 8 other;
     tatagcgcgc cctataactt cgcccattgt ttcggcaccg agctcgtcgg ccccgcgaac        60
     ccctttaccg caccgcgcct acgggctgcg tccgcgacgg cgtcctgcgc tcccacagtg       120
     ccgagccggc tgtatctaag ggaggacgcg tgcgcgagcg tgacccgtgg gctcgttccg       180
     kgtgcwtttg ccgactttat tacatattaa ttattgtmat tgttaccckt acaccccmca       240
     taattwttat aagtkaawta aataaatata tactcgata                              279
//
ID   Gypsy-20_OrIn-I repbase;    DNA;    INV; 4418 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4418
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1561-1561 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           15..1181
FT                 /product="Gypsy-20_OrIn-I_1p"
FT                 /translation="MPKKKVMYVHLVKVGDQQFEIAALSEDKEVWLQLNPE
FT                 DVNLELHPVLAEKPSIRAAKIAIKPLHGFRKVGVTIDNDLKRIYFDDSDNL
FT                 SFNSLPLEEVSKVTEPNEENGEMFFLLKKIQELEEKIKTQRITLKEVEKKF
FT                 LIDKYDRKKGMKAREWLARFTVECDRNHIESDAQKIEALRFFLDGTSKDWF
FT                 ESNMKKFGLEDWQRWEDSFLDIFEERGWMSVRKAYSYKYLSGSLIDYALTK
FT                 ERMLLEIDPNGLEFSRVQAMVVGLPIEVQEEIDREGVRTVKNLFAELGKFE
FT                 ESFQKKKRDSPPNTVTNQHNKKISVSEKQQNQMAPINQQIQVSKTPCYICD
FT                 AMGWKNRYHPIGVCRNKAIYDAKMRTNLTEVSAEEEKTLLNIISEN"
FT   CDS           1133..4417
FT                 /product="Gypsy-20_OrIn-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="SKCRRGENTFKHNFGKLKCPGKLNPLLRLNVVMNDTI
FT                 QIKAIYDSGANISILNQRIADTFNTSLIKSAHKIRTLGGFSYLDSRATVKL
FT                 KIGDITDTLDVFIVSSKNFSYDLLIGLDAIKKFRLIQDENLNISQSLDEMN
FT                 ETKRPDSWPKMQEKKKDEKIIEDENMSVSNILDKKIEDEWLDLLPKKKSEE
FT                 KKRKIEDSRSRIIFGLENPQLRAEIHLNEEVGLLEDFKKSISHIEEQDKRE
FT                 SICRLMMKYRHQFAKNKFDVGQVRSKEAEIRLIRDEYVNSRPYKCSLIDEE
FT                 EIKSQIKKLLEAGLIQESESPYAAPVTLAYKKEDGKRTRLCIDFRKLNKLL
FT                 VPDCQPFPTIQEIIDQVVHCKFFTTLDVNSAFWCVKLRKEDQEKTGFVTRS
FT                 GKFEFKVLPFGLRSSPSIFQRILSNIIRRNNLDSFCVNYIDDILVFSKSWA
FT                 EHLQHIDKILRTISEEGFKLKLSKCVFGTKSVRYLGHIITENYVSPAHENL
FT                 IAIKKLKRPTDKSGVRSILGSINFYSKYIQNSAIKFEPLHRLLRKDIKFVW
FT                 TEECENCFQTVKDYLCSAPILAIYDPLKPVIIETDASYQGIGASLKQPHED
FT                 GLLHPVAYFSRKLSPTEKKMEVIHLECRAIKDAIKYWQFYLIGREFVVYSD
FT                 HKPLENLRTKARTDEHLGDLINYLSQFHFKIVYKPGKDNILADLLSRNPVL
FT                 EYFEDTDVIKTVNLLEYSEILEDQKKNVTELRSNHDLQSRQGLYYQKWKNS
FT                 PRICISQDLGKRLIEKVHIDFGHIGPVQMLATIRPHYYIRKLDKMVREFYN
FT                 ACKICVENKVRRGRAIGLLSRLGPATRPFEIMSIDTVGGFSGNRSPKRYLH
FT                 ILIDHFTRYVWISTSTTQTSRDFVKLVDSLVQKDEIQILLADRYTGIDSDE
FT                 FRTYLESKGIQIVFTSVNCASSNGLNERVNQTLVNRIRCQINSGDNRAWST
FT                 IAQNCVAQYNKTVHSSTRFSPEYLLSGKRQQLSPIQEDDDTLEEDRKKAFM
FT                 NSSQSFESNKARIDLKRREYTFRPGELVYVENAHPLNRNKLDRIRIGPFKI
FT                 VRQISSTFFEVSTGRRRNISNFFHSSKLTPYAKVSGVE"
XX
SQ   Sequence 4418 BP; 1547 A; 703 C; 914 G; 1254 T; 0 other;
     aataaattaa tacgatgccg aaaaagaagg ttatgtacgt acatctggta aaagtcggag        60
     accagcaatt tgaaatcgct gcattatcgg aggacaagga agtttggctt caattaaacc       120
     cagaagatgt gaatttggaa ctacatccag ttttagcaga aaaaccctcc atcagagcgg       180
     ctaaaattgc tattaaaccc ttacacgggt tccgcaaggt aggagttaca attgacaatg       240
     acctgaagag aatctatttc gacgattcgg acaatttgag ttttaattct ctgcctcttg       300
     aagaagtatc gaaggttaca gaaccgaatg aagaaaatgg tgagatgttc tttttattga       360
     aaaagatcca agaactcgaa gagaaaatta aaactcaacg cataacgttg aaggaggtag       420
     aaaaaaaatt tttgatagat aagtacgata ggaaaaaggg aatgaaagcc agagaatggc       480
     tagctcggtt cactgtggaa tgtgatcgaa accatataga aagtgatgcc cagaagatag       540
     aagctttaag gttcttttta gacgggacat ctaaagactg gtttgaatca aacatgaaga       600
     agtttggtct cgaggattgg cagagatggg aggactcatt tctcgatata tttgaagaaa       660
     gaggatggat gtcggtccgc aaggcttata gttataaata tctttcaggc tctctgatcg       720
     attatgccct gacaaaagaa agaatgttgc tggaaataga tccaaacggt ttggagtttt       780
     caagggtaca agctatggtg gtaggtttgc ccatagaggt tcaagaagag attgacagag       840
     aaggggtcag gactgtgaaa aatctatttg ctgaattagg caaatttgaa gaatcgtttc       900
     agaaaaagaa gagagacagt ccacctaata ctgtcacgaa ccaacacaat aagaaaattt       960
     cagtttcaga aaaacagcaa aatcaaatgg ctcctattaa ccaacaaatt caagtatcta      1020
     aaacaccatg ttatatttgc gatgcgatgg gttggaaaaa tagataccat ccaattggag      1080
     tgtgcagaaa taaagcaatc tatgatgcaa aaatgagaac taatcttact gaagtaagtg      1140
     cagaagagga gaaaacactt ttaaacataa tttcggaaaa ctgaaatgcc cgggtaaact      1200
     aaatccactt ctacgcctta atgttgtcat gaatgataca atacagatca aagctattta      1260
     tgacagcgga gcgaatatca gtatccttaa tcaaaggatt gctgacactt ttaatacaag      1320
     tttgattaaa agtgcgcata aaataaggac attaggtgga tttagttatt tggattcccg      1380
     ggcaaccgta aaattaaaga ttggagacat tacagacaca ttagatgtat ttatagtttc      1440
     gagtaaaaat ttttcttatg accttctgat aggtcttgat gcaataaaaa aattccgcct      1500
     tattcaagat gaaaatttga atatatcaca aagtttagat gaaatgaatg agactaagag      1560
     gcctgattca tggccaaaga tgcaagaaaa aaagaaagat gagaaaatta ttgaagatga      1620
     aaatatgagt gtttcaaaca ttttagataa aaagattgaa gatgaatggc ttgatctatt      1680
     gccaaagaag aaaagtgaag aaaagaagag aaaaattgaa gatagcagaa gtcggattat      1740
     ttttggtctt gaaaacccac aacttagagc tgaaattcat ttgaatgaag aggttggact      1800
     attagaggac ttcaagaaat caatttcaca tattgaggaa caagataaga gggaatcaat      1860
     ttgtaggttg atgatgaagt atagacatca atttgctaaa aataagtttg atgtgggaca      1920
     ggtacgttcc aaggaagcag aaattcgatt aatccgtgat gaatatgtca attctcgccc      1980
     atataagtgt tcacttatag atgaagaaga aatcaagtca cagattaaga agctgttaga      2040
     ggctggtttg attcaggagt cggaatcacc atatgctgca cctgttacgc tggcctataa      2100
     aaaagaagat ggaaaacgaa ctagactttg cattgacttt cgaaaactga ataaattgct      2160
     agtgccagac tgtcaaccgt tccctacaat tcaagaaata atagaccagg tagttcattg      2220
     taagtttttc actactctag atgttaattc tgcattttgg tgtgtgaaat taagaaagga      2280
     agatcaggaa aaaacaggtt ttgttaccag atctggaaaa tttgaattca aggtcttacc      2340
     atttggtctt agatcttctc cttcgatctt tcaacggata ttatccaata ttatccgccg      2400
     caacaacctt gattcctttt gcgttaatta tatagatgat atattagtat tctctaaatc      2460
     ttgggcagaa catctacaac atattgacaa aattttacgc acaatttctg aagaaggttt      2520
     taaactaaaa ttgtctaaat gcgtttttgg aactaaatcg gtgaggtatt taggacatat      2580
     aattacagag aactatgttt caccggctca tgaaaatctt attgccataa agaaattgaa      2640
     gcgaccgact gacaaatctg gggtccgtag tatcttaggc tcgatcaact tttattcaaa      2700
     atatattcaa aatagtgcta taaaatttga gccattacac cggttgctga gaaaggatat      2760
     taaattcgtt tggacagaag aatgcgaaaa ctgtttccaa acagtgaaag attatttgtg      2820
     ttccgcaccg atcctggcta tttatgatcc tttgaagcca gtgatcattg aaactgatgc      2880
     cagctatcag gggattggag cttctttaaa gcagccccac gaggatggac ttttacatcc      2940
     tgttgcttat ttttctcgta agttgtcacc tacggaaaaa aaaatggaag tgattcatct      3000
     ggagtgtcgt gccatcaaag atgccattaa atactggcaa ttttatctca ttggaaggga      3060
     gtttgtggta tacagcgatc ataagcctct ggagaatctg cgtacgaaag ctcgtacaga      3120
     tgaacatctt ggtgatctca taaattactt atctcaattt catttcaaaa ttgtctacaa      3180
     gccaggtaaa gataatatct tagctgatct tttgtctcgg aatcctgtgt tagaatattt      3240
     tgaggataca gatgtgatca agactgtaaa cctattagaa tattcagaaa tcttagaaga      3300
     tcaaaagaag aatgtaactg agcttcgatc gaatcatgat ctccagtctc gacaaggact      3360
     ttattatcaa aaatggaaaa actcgcctag aatttgcata tctcaagatc ttgggaaacg      3420
     gctcatagag aaggttcata tagattttgg acatattgga ccagtccaaa tgttggcaac      3480
     tattcggcct cactactata taagaaaatt ggacaaaatg gtgagagaat tttataatgc      3540
     atgtaaaatt tgtgtagaaa acaaagtacg aagaggacga gcaattggtc tactgtctag      3600
     attaggtcct gctactcgtc catttgaaat aatgtcgatt gatacggttg gaggtttcag      3660
     tggaaatcga tctcccaaac gatatttaca cattttaatc gaccatttta cacggtatgt      3720
     ctggatttct acatctacga cacaaacgtc tcgagatttt gttaaattgg ttgattcctt      3780
     ggtccagaaa gatgagatac aaatactttt ggccgatcga tacacaggga ttgactcaga      3840
     tgaattccgg acatatttag aatcgaaggg tatacaaatc gtttttactt ccgttaattg      3900
     tgccagttct aatggactta atgagagagt caaccaaacg ttggtgaacc gaattagatg      3960
     tcagataaat tcaggagata acagagcttg gtctacaatt gctcaaaact gcgtagccca      4020
     gtacaataag acagttcaca gttcgactcg gttttcaccg gaatacttac tcagtggaaa      4080
     aagacaacaa ctttcaccga ttcaggaaga tgatgatact ttagaagaag atcgaaaaaa      4140
     ggcattcatg aattctagtc aaagttttga atccaataag gcaagaatcg atctgaagag      4200
     gagagaatac acgtttcgac cgggagaact agtttacgtt gaaaatgctc atcctttaaa      4260
     cagaaacaaa ttagatcgca tccggattgg accatttaag attgttcggc aaatttcgtc      4320
     gacatttttt gaagtttcaa cgggtagacg aaggaacatt agtaattttt ttcattcttc      4380
     aaaacttact ccttatgcta aggtctccgg ggtggagg                              4418
//
ID   Gypsy-20_OrIn-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-264
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1540-1540 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 264 BP; 74 A; 30 C; 47 G; 113 T; 0 other;
     tgtaagtgag tgacttcacc actagaatag ttggtgaggg ttccgctaga cttcggtagc        60
     tcgtctaggg aatcttggtc tagtgaagtg aacgtttgtt ttattttatc agtttatcag       120
     ttttgaatac ttattaagaa ttttaagagt aatttacgta ttaatttatt tcctttttaa       180
     ggtaattgta ttttgtttat ttatatatgt atattaatca atatgttcct ttttaaggct       240
     aataaattac gttaaccagt taca                                              264
//
ID   Gypsy-20_PBa-I repbase;    DNA;    INV; 7700 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7700
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 711-711 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           581..1858
FT                 /product="Gypsy-20_PBa-I_1p"
FT                 /translation="MSYRNSKAHYNTDSSESSSINNSFESDYISLKEKPTI
FT                 TNDRASSLVHIMDEPSHTRDQQSRRSSTSTSNSYFSVRHSLSLLPVFNGTN
FT                 APVHQFTSDFKGVLELTEPEERLFFFRAVLQTKLTGDAALIRSIYTITNPD
FT                 ELCSALEKEFGNFKSFDNWELEINNLRQHRNESLEEYINKVRKLNSEMIVA
FT                 ISNYPDPTARTGLKVFATNKLIDHFIGGLHRHIGQHLLVQKFNTLEDAIES
FT                 TVRFVRKSQYHTDRLKFNNHNQSNYVTCNYCKKIGHSENECRKKYFNMQNR
FT                 NTNSNFPHNNYRYNNREFNTVQNFDNNSRPRFNNNNSNTQTNSYQENSRRN
FT                 YNNRNNPINSPNNYHYNGNQSNNSHLNYQGQAKSAQRLGQSTSRANPIHII
FT                 ETTQEHTQSEQPPEILSLSPSTSSQIHQINSC"
FT   CDS           1678..5463
FT                 /product="Gypsy-20_PBa-I_2p"
FT                 /translation="FAFKLPRPSEERATLRPINESRESNPHNRNNARTYTI
FT                 RTTSRNLITIPFDELTNPSDQFLLDTGADINIIKASSLLRDTLVYQDNKVE
FT                 IQGITEEKQQTLGTVYLNSENGVHEFHVVPSKFPLKEQGIIGSTFLRQENA
FT                 KIDFEKRTVTIRNNKIYPLEFSNIVTLPARSMCLCTIKTKQNNIENGLINQ
FT                 QEILRDVFLINNIVKVTNNETRTYVINTTEEEINIEIPAINVEPVLIDTSP
FT                 RDSPTYSIDSVISNNLTDRLKILKENLRLEHLNKEEKLSILPVIENYNDIF
FT                 YLPGDKLKGTNRITHSIPTTDDTPIVVKQYRYPPVHKEEIKQQVNKLLDQD
FT                 IIQPSLSPFNSPLWVVPKKPDADGNKRWRLVIDFRKLNKKTVGDAYPLPNI
FT                 TDILDQLGKARYFSCFDLASGFHQIPMNPQDSIKTAFSTPNGHYEYKKMPF
FT                 GLKNAPATFQRLMDNVLTGLQGNICFVYLDDIVIYAESLKEHTEKLIQLFK
FT                 RLREAGLSLQPDKCEFFKKELLYLGHIISENGVKPNPEKIKAVKEYPVPKN
FT                 HKELRQFLGLVGYYRRFIKNFSAITQPFTSLFRKNIPFKWEMQQQINFEKI
FT                 KELLLNEPILQYPDFNKEFILTTDASDEGIGAVLSQGKVGYDLPIAYASRT
FT                 LNKAERNYDTTEKELLAIVWATKHFRPYLYGKKFKIITDHKPLIWLFNVKD
FT                 PSSRLMRWRLKLEEYDYEILYKEGKQNTNADALSRIPQISALQSKASSSNH
FT                 VNPSYSLFLQHALNDSLWKTNNIIPQTSGNIKGLLVKEAIPSPKIKITLSK
FT                 IDGNKAKNITLTLGDINVIKKKRSTEIHLITRENKQALVNLETIFECLIKL
FT                 KEYAISNNQTIISIAPIGDITNKARITQMIKYIFKDTPIKVFLLESVPKEI
FT                 TDPNTKQDILKELHNSKIGGHKGVTKTLKRIQQYYSWDGMKQDVKKYIKAC
FT                 HDCQKRKLVREKTKAPMLITDTPSEAFQKVAIDIVGPLPETETGNKYILTT
FT                 QDQLTKFCTAYPLSDTNSTTIANIIINKFIYTFGSPAELLSDQGSNISGEI
FT                 MKEVSRIFKIKQIKTSVYHPQSNGSLERSHHVLAEYLKPYINEHQNNWDSF
FT                 LDAAMFSYNTSYHESIKISPYELIFGRKPRLPSTLVEPRQGITHREFLVDL
FT                 VERLTYLKKHAAENLQKAKESAKQYYDKRVKPLILDPGDYVYVLHETVRTG
FT                 SKKLTDQYDGPFEVLHRINDVNYEIKRGRRNQILHVNKLKRAYFSLQDNKD
FT                 G"
FT   CDS           join(5459..7060,7021..7458)
FT                 /product="Gypsy-20_PBa-I_3p"
FT                 /translation="MVNSETNLFVNQPLEKLAGIYFENLGELHIFRDHWKF
FT                 VNYVNLAPLEEKEEILKFYTNKIDLLCYITYNFGRGTTCSGAQELQRLKRK
FT                 IASLKINRETINDLIGRADDVNEFKRRSKRGVFDFVGQIAKILFGTLDSSD
FT                 ADYYNEQIDLVYNNSRQLTNLYKKQISIIQSAIGNFSNAFTASKQKFKEVD
FT                 FNLNTLNKEILKNTKTLSDVQINTKINSYLMECSEMMLEYELELGVLTDAI
FT                 LLARRGLIHPKILTPKELFNNLKATRYALDDKRLPVALEPNEFTNLIDVSD
FT                 VNVFYKNHRLIYVIEMPLIEQKDFTLYHTIPLPIKQGERSIYAFINPIYTY
FT                 LGIRSDKQLYTHLTEHDVSKCKKINNVMICKQTDLLYQISAIHNCESELLR
FT                 SARLESILKECDIRVMRIHNTVWYQLKTTNSWLYTAPRNETLHILCEDNKP
FT                 RQTQLFSTGLIKLSANCDAISDNALLRSRKTGIINTIEKDFIPNVKLNTSK
FT                 LCEDLKKHNVNISDLPLLNIGKTPNLDVHLLKRQRALLFRRPFIKKTASTA
FT                 LDEIYREAEELGKHHRTETFYRKVTSWFYYILYTIVGLVILYIIGKCSLIS
FT                 KIIHIIKVCCVPKEGCTQYFYKCFNNNVNTRHPQDNNRQVVTFTAIPTEYN
FT                 EPSQDNLILEPKRNTETRRSRSRNDRLSNLI"
XX
SQ   Sequence 7700 BP; 2968 A; 1368 C; 1255 G; 2109 T; 0 other;
     actggtggca gcggtaccga accatttaag aaggttgaag cgtctaccaa cacctctgtt        60
     ttgccaacaa gactgagtca acgaaacaaa gcacgaagga agagaacaca gtcaatcaag       120
     attaaaatcg agaaaacttc gcaatctagt agaagattaa ggtctggttg acgattattg       180
     ttcccacttg acgaaggcga caataggcac gattattcct cataattgta cgatttggct       240
     acctatagtc cgatgaaacc ctggtgaatt gtggcataaa agcaaaaaaa aaatcacttg       300
     aggtaaaagg cattaaggag ccgatacgtc gcagacggaa accccgcagt gggcacggaa       360
     aaggaccacg agacatcccg gaacgaaagc aaatatcctt tcgagacaac gccgacggca       420
     acgacgagac tccgtagaca accgacacgt aaaaaggact tcattgaacg acggcatcct       480
     gaacaacctc atcgaacgac gagattctgc attagcgatg aatatttccc ggacaaccac       540
     gtgttacgtt ctgctgttac tgtaagtctt acgaagtcat atgagttata gaaattccaa       600
     agcgcactat aatacagata gttccgaaag tagctctata aataatagtt tcgagtccga       660
     ttatatatct ttgaaagaaa aaccgacaat tacgaacgat cgagcgtcat cactagtaca       720
     cattatggat gaaccaagcc atacccgtga ccaacaaagt cgaagatctt ctacttcgac       780
     aagcaatagt tatttttctg ttcgtcatag cttatcactc ttgccggtct ttaatggtac       840
     gaatgctccg gtacatcaat tcacatctga ctttaaagga gtcctcgaat taactgaacc       900
     agaagaaaga ttatttttct ttagagctgt tttacaaact aaattaacag gagacgctgc       960
     gttaattagg tcaatatata ccataacgaa tcccgacgaa ttatgtagcg cgttagaaaa      1020
     agaattcggt aatttcaaat cttttgataa ttgggaattg gaaataaata atctcagaca      1080
     gcataggaat gaatccttgg aggaatacat taataaagta agaaaattaa attctgaaat      1140
     gattgtcgcg atttctaact accctgatcc gacggcaaga acaggactaa aagtatttgc      1200
     tactaataaa ctaatagatc attttatagg tggattgcat agacatatag ggcaacatct      1260
     tttagtgcaa aaatttaata ctttagaaga cgcgatagaa agtactgtta gatttgttag      1320
     aaaatctcaa tatcatacag acagacttaa atttaataat cacaatcaat caaattatgt      1380
     aacttgcaat tattgtaaaa agatcggtca ttccgaaaac gaatgcagga aaaaatattt      1440
     taatatgcaa aaccgaaata caaactcaaa ttttccacac aataactatc gctataataa      1500
     tcgcgaattt aatactgtgc aaaactttga caataattca agacccagat ttaataataa      1560
     taatagtaat acacaaacta atagttatca agaaaatagt agacgaaatt ataataatcg      1620
     aaataaccct atcaactcac caaataatta tcactataac ggcaatcaat ctaataattc      1680
     gcatttaaac taccaaggcc aagcgaagag cgcgcaacgc ttaggccaat caacgagtcg      1740
     cgcgaatcca atccacataa tagaaacaac gcaagaacat acacaatccg aacaacctcc      1800
     cgaaatctta tcactatccc cttcgacgag ctcacaaatc catcagatca attcttgtta      1860
     gatacgggcg ctgatattaa tattattaaa gcaagctctt tacttcgcga cacgttagta      1920
     tatcaggata acaaagttga aattcaaggc ataacagaag aaaagcaaca aactcttggg      1980
     acagtatact taaactcgga aaacggagtt catgaatttc acgtagtacc tagcaaattt      2040
     ccattaaaag aacagggaat tatagggtca acctttttac ggcaggaaaa tgcaaaaata      2100
     gattttgaaa agcgaaccgt tacaatcaga aataataaaa tatatccatt agaatttagt      2160
     aatatagtaa ccctaccagc tagaagcatg tgtttatgca caattaaaac aaaacaaaat      2220
     aatatcgaaa acggattaat aaatcaacaa gaaattttgc gtgatgtttt ccttataaat      2280
     aatattgtaa aagtaactaa taatgaaact cgtacgtatg taattaatac aacggaagaa      2340
     gaaattaaca tcgagatacc cgcaattaat gtagagccag tgttaatcga cacgagcccg      2400
     agggacagcc ctacatactc tatagattcg gttatctcaa ataatttaac ggatagattg      2460
     aaaatattga aagaaaattt acgactagaa cacttaaata aagaagaaaa gctctctata      2520
     ctaccagtta tcgaaaatta taatgatata ttttatttac cgggagataa actaaaaggt      2580
     acaaatagaa ttacacattc cattcccacc acagatgaca ctccgatagt tgtaaaacaa      2640
     tacagatacc ctcctgttca taaagaggaa ataaaacaac aagtaaataa actgcttgat      2700
     caagatatta ttcagccttc actttctccg tttaattctc cgttatgggt agtaccgaaa      2760
     aaacccgacg ctgatggtaa caaaagatgg agattggtaa tagatttccg taaactaaac      2820
     aaaaaaacag tcggggacgc ataccctttg ccaaacataa cggacattct tgaccagcta      2880
     ggtaaagcca gatacttctc atgtttcgac ttagcttcgg gttttcacca aattcctatg      2940
     aatccacaag actcaattaa aaccgccttc agtacaccta atggtcatta tgaatataaa      3000
     aaaatgccct tcggtttaaa gaatgctccc gcgacattcc aaagactaat ggacaacgtt      3060
     ttaacgggtt tacaaggaaa catttgtttt gtttatttag acgatatcgt catttatgcg      3120
     gaatcattga aagagcatac tgaaaaactt attcaactct ttaaacgatt aagagaagcc      3180
     ggtcttagtc tacaaccgga caagtgcgaa ttcttcaaaa aggaattgct ttatctaggt      3240
     catataattt ctgaaaacgg cgtgaaacct aacccagaaa aaataaaagc ggtaaaagaa      3300
     tatcccgtcc cgaaaaacca taaagaactc agacagtttt taggccttgt aggatattat      3360
     cgacgtttta taaaaaattt tagtgcaatt acccaacctt ttacatcact ttttaggaaa      3420
     aatataccat tcaaatggga aatgcaacaa caaataaatt tcgaaaaaat caaagaatta      3480
     ctattgaacg aacctatatt acaatatccg gattttaata aggaattcat attaactaca      3540
     gacgcgagcg acgaaggaat tggcgcggtt ctatcacagg gtaaagttgg atacgatctt      3600
     cctattgctt acgcttcccg gacacttaac aaagcagaac gtaattacga taccacagaa      3660
     aaagaacttt tagccatcgt gtgggctaca aaacactttc gaccatattt gtacggcaaa      3720
     aagtttaaaa taataaccga tcataaacca ttgatttggc tttttaacgt taaagatcca      3780
     tcgtcgcgtt taatgcggtg gagattaaaa ttagaagaat atgactacga aattttatac      3840
     aaagaaggaa aacaaaacac taatgcagac gctctttctc gaataccgca aatatcagcc      3900
     ttacaaagta aagcttcgag tagcaatcac gtaaatccta gttacagttt atttctacaa      3960
     catgcattaa atgattcatt atggaagaca aataatataa ttcctcagac ttcaggcaac      4020
     ataaaaggat tattagtaaa agaagcgatc ccttccccaa aaattaaaat tacactatca      4080
     aaaattgacg gaaacaaagc gaaaaatata acactaacac taggagatat taacgtaata      4140
     aaaaagaaac gctcaaccga gatacatctt attacacgag aaaataaaca ggcacttgta      4200
     aatctagaaa ctatattcga gtgtttaatt aaattaaaag aatatgctat ctcgaataat      4260
     caaacgataa tatcaatagc tccgatagga gatattacaa ataaagcaag aatcactcaa      4320
     atgattaaat atatatttaa agacacacca attaaagtat ttttattaga atccgtacct      4380
     aaagaaatta ctgatccgaa tacaaaacaa gatatactca aagaattaca caattcaaaa      4440
     atcggtggtc ataaaggcgt cacgaaaaca ttaaaacgaa ttcaacaata ttactcatgg      4500
     gatggtatga aacaagacgt gaaaaaatat ataaaagctt gtcacgattg ccaaaaacga      4560
     aaattagtcc gcgaaaagac gaaagctcct atgttaatta cagacacgcc aagcgaggca      4620
     tttcaaaaag ttgcgataga tattgtagga cctctaccgg aaacagaaac tgggaataaa      4680
     tatatattga cgacgcagga tcagttgaca aagttttgca cagcctatcc attatcagat      4740
     actaacagta caacgatagc taatataata attaataaat ttatttatac ttttggttca      4800
     cctgcagaat tgttgtccga tcaaggtagt aacatatccg gagaaataat gaaagaagtt      4860
     agcagaattt ttaaaataaa acaaatcaaa actagcgttt atcatccaca atcaaatgga      4920
     tcattggaac gttctcatca tgtattagcc gaatacttaa aaccttatat taatgagcat      4980
     cagaataatt gggattcgtt tctagacgcc gcaatgttct catataatac ctcgtatcat      5040
     gaaagtataa agatatctcc ttatgaatta atatttggtc gcaaaccacg gttaccttcg      5100
     actcttgttg agccacgaca aggaataaca catagagaat ttctcgtaga tttagttgag      5160
     agactaactt atttgaaaaa acacgcagcg gaaaatctcc aaaaagctaa agaatcggct      5220
     aaacaatatt atgacaaacg cgtaaaacct ttaatactag atcctggaga ctatgtttac      5280
     gtactccacg agacagttag aacaggcagt aaaaaattaa cggatcagta cgatggtcca      5340
     ttcgaagttt tgcatcgaat aaacgatgtt aattatgaaa ttaaaagagg tagacgtaat      5400
     caaatcttac atgtcaataa attgaaacgc gcatatttct ctttgcagga taataaggat      5460
     ggttaattcg gaaacaaacc tcttcgttaa tcaaccgcta gagaaattag cagggattta      5520
     tttcgaaaat ttaggagaac tacatatttt tagagaccat tggaaatttg taaattatgt      5580
     aaaccttgcg ccgttagaag aaaaagaaga aatattaaaa ttttatacta ataagataga      5640
     tcttttgtgt tacattacat ataacttcgg gcgtggtaca acatgctcgg gagcgcaaga      5700
     attacagcgc ttaaaacgta agatagcaag tttaaaaatt aatagagaaa ccattaacga      5760
     tttaatagga cgagccgatg acgtaaacga attcaagcgc agatccaaac gaggagtttt      5820
     tgattttgtt ggtcaaatag cgaaaattct ttttggtaca ctagattcat ccgatgcaga      5880
     ttattataat gaacaaatag atctcgtata taataactca cgacaactaa caaatctata      5940
     taaaaaacaa ataagtatta ttcagtctgc tattggtaat ttttcaaatg cttttacggc      6000
     aagcaaacaa aaatttaaag aagtagattt taacttaaat actcttaata aagaaatttt      6060
     aaagaacacg aaaacgttat ctgatgtaca gataaatacc aaaattaatt catatcttat      6120
     ggagtgttcg gaaatgatgc ttgaatacga attagaatta ggagtattaa cagacgccat      6180
     attactagca cgtcgaggct tgattcatcc aaaaatactc acaccaaaag aattgttcaa      6240
     taatttaaaa gcgacccgat atgcgttaga tgataagcga ttgcctgtag ccttggaacc      6300
     taacgaattt actaatctaa tagatgttag cgacgtaaac gtattttata aaaatcatcg      6360
     attaatttat gtaatagaaa tgccgttaat cgaacaaaaa gatttcacct tatatcacac      6420
     aatcccacta ccaatcaagc agggcgaaag gagtatttat gcgttcataa atccaattta      6480
     tacttaccta ggtattagat ccgataaaca actgtatact catctaacgg agcatgatgt      6540
     atctaaatgt aagaaaatta ataacgtgat gatttgcaaa caaacggatt tattatatca      6600
     aatttcggcg attcataact gtgaatctga attattaaga tcagctagat tagaaagcat      6660
     actaaaagaa tgcgatatcc gagtaatgag aattcacaac acagtttggt atcaattaaa      6720
     aactacaaac tcatggctat acactgctcc tcgtaatgaa actcttcata ttttgtgcga      6780
     agataacaaa ccacgacaaa cccaattatt ctctaccgga cttattaaat tatcggcgaa      6840
     ttgcgatgcc atttcagata atgctctgtt acggagtcga aaaacgggaa ttattaatac      6900
     cattgaaaaa gacttcatac ctaatgttaa acttaatacg agcaaattat gcgaagacct      6960
     taagaaacat aatgtaaaca tttcagatct ccctttatta aatattggta aaactcctaa      7020
     tttagacgtc catttattaa aaagacagcg agcactgctt tagacgaaat ttatagagaa      7080
     gcggaggaat taggtaaaca tcatcgaaca gaaacgtttt atcgaaaggt aactagttgg      7140
     ttttattata tattatatac cattgtcggt ctagttattt tgtatataat agggaaatgt      7200
     tcattaataa gcaaaatcat tcacattatt aaagtctgtt gcgtaccaaa agaaggttgt      7260
     actcaatatt tctacaaatg tttcaataat aatgttaaca cccgccatcc gcaagataat      7320
     aatcgacagg tagttacatt tactgcgatt cctactgaat ataatgaacc ctcccaagat      7380
     aatttaattt tagaacccaa aagaaataca gagacacgcc gatctcgttc tcgaaatgat      7440
     cgactttcaa atctaattta acgctaattg taagtcacgt atatatatat atataagtaa      7500
     tatctgcgta tgattatact aaactattaa gtaattaact tagtgtgtgt gtcgatatgt      7560
     tataattgta attttaagcc accatactgt cacgttcaga ttattattat taagctacgc      7620
     aaattgatta taattatatc tacgaaaccc gaatgtattt tgcgatatat caagaaggat      7680
     cttcaattta aggggggagg                                                  7700
//
ID   Gypsy-20_PBa-LTR repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-468
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 712-712 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 468 BP; 132 A; 119 C; 67 G; 150 T; 0 other;
     tgttacgtgc cgaaactcgg gatttgaaaa ctattatttt tttgttcccc tttgtcgaac        60
     gaattttaag tatcgcgtta tttaagtaat tcaggacatc ccttcctttt tttctcttcc       120
     gacacacttt cactttagtc ctgtccaaac aactcataac acatcatcac gttttccaaa       180
     attctcacgt agttttcccc ttttagaaaa ccgtcccaac cgttatattc ttgcatcaaa       240
     acgcgtcgcg ttattggtta ttacgtcagc aaaataccgc ctacctcgtc ttggacgaag       300
     atccttcctg aacacgaagt gtagttctcg tcaaaaactc gaaggaaaaa catcgcaatc       360
     tcgtcaagtg tatcgtgtgc gagaaataaa attcaacctt acaacaatcc tatgaattct       420
     ctgaattctt aattcctcta cacattacgt cgcgactcgc acgtaaca                    468
//
ID   Gypsy-20_RP-I repbase;    DNA;    INV; 2975 BP.
XX
AC   ACPB02043182;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_RP_;
KW   Gypsy-20_RP-LTR; Gypsy-20_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2975
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02043182; Positions    4821    1847.
XX
CC   Positions [2055-2537] - Integrase core
CC   'CATCC' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1053..2951
FT                 /product="Gypsy-20_RP-I_1p"
FT                 /translation="MGMVNYIMKFVPRLAELTAPLRTLLQKGVAWTWGPTQ
FT                 YQGWGNIKKAISSVPVLAGYETGLPIRVAADASTKGLGAVLEQQHIEGWKP
FT                 VMFASRTLSETEGRYAQIEKEALAITWACEKFQDYLLGTVFELLTDHKPLV
FT                 ELMARKPIAELSARLQRFRMRLLCFDFKVTYIPGKHFYTPDILSRDPMEQV
FT                 GLYEDVLEEKSFVLSIIQALPCSDMKLQQIKEAQEKDMECKEIANCLKKQQ
FT                 WQPNSCFWKYRDEFNVQNGLLLKGSRMFIPQEMRKEMLMKLHQGHLGIVKC
FT                 RSRAKESVWWPGISEQIKSVVANCPTCREHRNNRSEPLMLSKLPDAPWEAF
FT                 SADLLKFQGKWYLVIQDYYSRFLELVHVNKLTSEAIINRLKNIFARHGIPV
FT                 SLRTDGGTQFTADMFKRFQEEYGFRHVISSPHFAQSNGSAEKAVDIAKRIL
FT                 KKNKDPNLALLEYRTTPLEQGLSPAELLYGRKLRSTLPSIKNFARVSRNQM
FT                 IKFKEKDAQLKERNKQNFDRRNGVKVLPQLQNNSSVWIPDMKKYGQVARPS
FT                 AEPRSYIVKTPSGELRRNRKHIIVVAEDEPDENAEAKEKQAKGERVEEEET
FT                 KQTQEEGKRKGVEEQLNHRRDTQTRISRTRHNPPT"
XX
SQ   Sequence 2975 BP; 1027 A; 504 C; 723 G; 721 T; 0 other;
     tggtgtcagg tgtgtaatat atatataggt atatgttttc ttttgtgtcc gaacaagttt        60
     aattgatcta tgaccaggga tagtgggatc gaagtgacgc ctaggaaaga cgcagatagg       120
     aacgagaaca aagaaaggac aactatagaa gatttgtatg tagtaaaaga tcagccgatt       180
     ccgttattaa gcaggcaagc attagtacaa ttagatttgg ttaaaattaa catagataat       240
     gtacaacagt taccagcaat agcagctgaa tttccagaag tattttcgaa gagtggaaaa       300
     atgaaagtag acggatataa aataaattta aaagaagggg cgctcccata tgcagtactg       360
     actccgcgcc gtattgcctt tccttataga gaaaaagtta aagaggaact cgactggatg       420
     caggcagaag gtataataga accaatagtg gagcccacag attggtgcgc acctatagta       480
     gtagtacctc ggaaagagat gggtagagtc agactgtgtg tagactacac ggaactaaac       540
     agaaacataa acagagagag atggcagctt ccagcagtag atgagtcctt agctcagctg       600
     gagggcggtc agtatttttc cttgttggat gcctccaatg gtttttggca aattccatta       660
     catgaagaaa gttggaaatt gactaccttc attactccgt ttgggaggtt tgtgttcaaa       720
     aggattccgt ttggtatttg ctcagggcca gaagtctatc aaaaaagggt ttcccagatc       780
     atcagtggac tggagggagt ggtgaataag gcagatgatt ttttggtagt cggtaaacta       840
     gagcacaaca tgatcaaaga ttaagaaaat tattacaaag attacgtgag tataggattt       900
     cgttaaactt aaataagtgt aaatttgcag tacaggaagt gactttccta gggcatttaa       960
     ttaaaaaggg agagatttgc ccagacccgg aaaaaataaa ggcaatcacg caattaaatc      1020
     caccaaaaga cgttaaagag cttagacatt tcatgggaat ggtgaattat atcatgaagt      1080
     tcgttccaag gctagctgag ttgacagctc ccttgagaac cttgctacaa aaaggagtgg      1140
     cctggacatg gggtccaacg caataccagg gctggggtaa tattaaaaag gcgatctctt      1200
     cagtaccagt actggcaggt tatgagacag gacttccgat tagagtagca gcagatgcat      1260
     ctacgaaagg tctcggagca gtgctggagc aacagcacat cgagggttgg aagccagtaa      1320
     tgtttgcgtc tagaacgtta tcagaaacag aaggacgata tgcccaaatt gaaaaagaag      1380
     cgctggcgat cacctgggcc tgcgaaaaat ttcaagacta tcttttagga accgtgttcg      1440
     aattactaac cgatcataag ccattagtgg aattgatggc cagaaaaccc attgctgagc      1500
     tgtctgccag attacagcgg ttcaggatga gactactctg ttttgacttt aaggttacat      1560
     acatcccagg taaacatttt tatacacctg atattctatc tagagatccg atggaacaag      1620
     ttgggttata tgaagatgtg ttagaagaaa aatcttttgt acttagcatt attcaggcgc      1680
     taccttgctc agatatgaag ttacaacaga taaaggaggc tcaggagaag gatatggagt      1740
     gcaaagagat agcgaactgc ttgaagaaac agcagtggca gcctaattct tgtttttgga      1800
     agtatagaga tgagtttaat gtacagaatg gactcctgct taaaggaagc agaatgttta      1860
     taccgcagga aatgagaaag gaaatgttaa tgaaactaca ccaagggcac ttgggcattg      1920
     tcaagtgtag aagtagagcc aaggagtcag tttggtggcc gggtatctca gaacaaataa      1980
     agtctgtagt ggcaaattgt ccaacatgta gagaacatag aaataatagg tcggaaccct      2040
     taatgttgtc caaattacct gatgctccgt gggaagcgtt cagtgcggac ctgttgaaat      2100
     ttcaaggaaa atggtacctc gttatacaag attattactc aagatttctg gaattagtcc      2160
     atgtaaataa actaacttcg gaggctatca tcaatagact aaaaaacatt ttcgcgcgcc      2220
     atggaatccc cgtatcatta aggacagacg gtggaacaca attcacagct gacatgttca      2280
     agaggtttca ggaggaatac ggatttcgtc acgtaatttc gagtccccat tttgcacaat      2340
     ctaatggttc tgcggagaag gcagtggata tagccaagcg catattaaaa aaaaataaag      2400
     atcctaacct ggcattgcta gaatatcgga ccacacctct agaacagggc ctaagtccgg      2460
     cggaattatt gtacggaaga aagctaagat cgacgctacc ttcaattaaa aactttgcgc      2520
     gggttagtcg taaccagatg ataaagttta aagaaaagga tgctcagctg aaagaaagaa      2580
     ataagcaaaa ctttgacaga aggaatggag taaaagttct ccctcagttg cagaacaaca      2640
     gttcagtttg gattcctgat atgaaaaagt atggccaggt cgcaagacca tctgcggaac      2700
     caaggtctta cattgtaaaa accccatcag gagaattgag aagaaacaga aagcatatta      2760
     tcgttgtagc agaagatgaa ccggatgaaa atgcagaagc aaaagaaaag caagcgaagg      2820
     gagaaagagt tgaagaagaa gaaactaaac agactcagga agaagggaaa aggaaaggag      2880
     tggaagaaca attaaaccac cgaagagata ctcagactcg gatttctagg actaggcaca      2940
     atccgccaac atagggttta ttaaaacggg gagga                                 2975
//
ID   Gypsy-20_RP-LTR repbase;    DNA;    INV; 147 BP.
XX
AC   ACPB02043182;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_RP_;
KW   Gypsy-20_RP-I; Gypsy-20_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-147
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02043182; Positions    1846    1700.
XX
SQ   Sequence 147 BP; 45 A; 14 C; 43 G; 45 T; 0 other;
     tgtagtgttg ggattagata gttggcagct cagcttggag gtaacagtga ggaggttggg        60
     atagagagct aggagatata catgttgcgc aataaggtta aataaagtaa ttgtacttac       120
     aagtgttttt atttgcatga cagtaca                                           147
//
ID   Gypsy-20_SI-I repbase;    DNA;    INV; 4333 BP.
XX
AC   AEAQ01023379;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_SI_;
KW   Gypsy-20_SI-LTR; Gypsy-20_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4333
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023379; Positions    4962     630.
XX
CC   Positions [2267-2809] - Reverse transcriptase
CC   Positions [3823-4299] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           284..3808
FT                 /product="Gypsy-20_SI-I_1p"
FT                 /translation="MAELEPPVSSQDKRAAGSADKHMKSTKKGGRKLTDDR
FT                 QKVRKYNDQDIDEMRIVELKDALRRLNVSTTGNKSELQMRLRQESARERRK
FT                 EKAGTSDKDAMTDDDEISDNEETMSESEKKVAGKEKRRRSASKNRQVKREH
FT                 CRRGETSDTDTSDTDISDTDASDTDTSVERTSNGRNQRRSLNDRRRYRRNA
FT                 FTIKDVEGSLTYFTGDDKLPIEKWITEFEDTSDLLQWDELQQLIYGKRMLK
FT                 GSAKRFISFEKGITSWKILKQKLKREFKTELNSALIHSQLFKRRRQPGESS
FT                 RQYIYAMQEIADQGYVEEEALIQYIVDGLPDEDNSKTFLYEACTIRELKKK
FT                 LEVYDRLKEKTQRKKTPLKKDKDNLKSSMKETKKELSKSGSRQTDKKHCFN
FT                 CGSAEHDVKSCTNADKGPKCFKCNCFGHIASKCDVKQTPPSETTPATVSCV
FT                 NSIDSKFILVDIAGAKYQALLDTGSDVSLIRDDLYQRIGKPKLKKTMRVFT
FT                 GLGNTTTKPSGAFNLKLSVEGEDYEIEIFVVPTSSMTSEIILGRNFLQDVE
FT                 VVIKRGHIGVKRPTAGELFAEEMREAVHHEKEDAEEKGFKELTVLPCTVAD
FT                 EIEVPEPYRSRIETMIAEYRPRKDVETSIETKIVLKDEIPVNHQPRRLAPK
FT                 EKKVLDKQISEWLQSGIIKPSQSEYASPVVIVSKKDGSSRICVDYRSLNKK
FT                 IIRDRYPMPLIDDKIDALAPFRVFSIIDLQNGFLHVPVNKNSQKYTAFVTP
FT                 IGQYEFTRTPFGLCNSPTNFLRFVNEIFRDLIQRSIVFTYMDDLIIPGVDE
FT                 TEALSKLTETLTVAANNGLNINWRICKFLQRRVEFLGHIIENGCVKPSPAK
FT                 IKAVQGFPRPTTFKQLQSFLGLTGYFRKFIKDYAKLAHPLYELKEGQHFHF
FT                 GQSQQLAFSRLKDALSRDPVLRIYNPKAITELHTDASKQGYGATLLQRKPD
FT                 EKHFHPVYYLSYKTTEAEKKWCSYELEILAIIKAVKKLRVYLLGIQFIIVT
FT                 DCQAFQRTLTKENLPPKVARWALMLEEFEYKIEHRASERMKHVDALSRFPV
FT                 MLLEDTVLLLIKGEQDKEERLRVIKQLLTKEPYEDYILENGLLMKKMDAKN
FT                 IVVLPSSMHHDVIRRTHENGHFGVKKMIESIREEYYIPKLKEKLEQYVECC
FT                 VPCILAEKREEKKKAC"
XX
SQ   Sequence 4333 BP; 1545 A; 787 C; 971 G; 1030 T; 0 other;
     aatttggggg ctcagccggg attcacgaca aggacgagaa tcagacggtt ttacatcaag        60
     agccagaacg acgtctatgc gaaagacgat cggcagtgcg cataagagaa tcgtcgtaca       120
     gaaagagatc agctttgaac cgtaagtcag tcgctaagtt gaatcagttg taagcttcgg       180
     tttagtaagc cgagctggta agtaagccgg cgatacggcg cgcgctaccg aacctaacct       240
     cagttgtaaa gttgtaaagt tgagagacta agaaacagtc gcaatggctg aactcgagcc       300
     accagtcagt agtcaagata agcgggcggc ggggagcgcc gacaagcata tgaagtcgac       360
     gaaaaaaggc ggacgaaagt tgacagatga taggcaaaag gttaggaagt acaacgacca       420
     ggacatcgac gaaatgagaa tagtcgagct caaggatgct ttaaggcggt taaacgtttc       480
     taccacaggt aataagtctg agttacagat gagattgcgg caagaatcag cgcgggaacg       540
     ccgtaaggaa aaggcgggaa cgtctgacaa ggacgccatg acagacgacg atgagatatc       600
     ggacaatgaa gagacgatga gcgagagtga gaaaaaggta gcgggtaaag aaaagagaag       660
     aagaagcgca tcaaagaatc gacaagtaaa gagagagcat tgcaggaggg gcgaaacgtc       720
     cgacaccgac acttccgata cagatatttc tgacacggat gcttccgaca cagacacttc       780
     agtcgaacga acgagtaatg gacgaaatca gcgtagatcg cttaatgata gaagaaggta       840
     cagacgtaat gcatttacta ttaaagatgt ggaaggcagc ctaacctatt tcacgggcga       900
     cgataaatta cctattgaaa aatggattac agaatttgaa gacacaagcg atttgcttca       960
     atgggatgag ttgcaacaat taatatacgg caaacgtatg ttgaaaggat cagcgaaacg      1020
     ttttatatca tttgaaaaag gcatcacgtc atggaaaatt cttaaacaaa aattaaaaag      1080
     ggaatttaaa accgaactaa atagcgcatt gatacacagc caattattca agcgtcgacg      1140
     ccagcccggt gagagtagtc gacaatacat ctacgccatg caggaaatag ctgatcaggg      1200
     atacgttgaa gaagaggcat taatacagta tatagttgat ggactacccg acgaagacaa      1260
     cagtaagacg ttcctatacg aagcatgtac tatacgagag ttgaaaaaga agctagaagt      1320
     ttatgatcgt cttaaagaaa aaactcagcg gaagaagacg cccttgaaaa aggacaagga      1380
     caatctcaag agcagcatga aggaaactaa aaaagaacta tctaaatcag gcagcagaca      1440
     aacagataag aagcattgct ttaattgtgg atcggccgaa catgatgtca agagctgtac      1500
     gaatgcagac aagggaccga aatgctttaa atgcaattgc ttcggacaca tagcttcaaa      1560
     gtgtgacgtc aagcagactc caccatccga aacaacacca gctaccgtaa gttgtgtaaa      1620
     tagcatagac agtaaattta ttctagttga cattgcaggt gcaaaatatc aggcattgct      1680
     agatacaggg agcgatgtca gcttaatacg agacgacctt tatcaacgca ttggcaaacc      1740
     taagctgaag aaaacaatgc gagtgtttac tggactggga aacacaacta ctaaaccaag      1800
     tggcgccttt aacttgaaat tgtctgtaga aggggaagac tacgaaatcg agatatttgt      1860
     agttcccacg agttctatga cgtccgaaat aatattagga cgtaactttc tgcaagatgt      1920
     tgaggtggta ataaagagag gtcacatcgg agttaaacgt ccaacagctg gagaactttt      1980
     tgccgaggag atgagagaag cagtacatca cgagaaagaa gatgctgagg agaaaggatt      2040
     caaggaattg accgtgttac cctgcacagt tgccgatgaa attgaagtgc ctgaaccgta      2100
     tcgaagccga attgagacaa tgatagcaga gtaccgaccg aggaaggacg tcgaaacatc      2160
     aatcgaaacc aagattgtat taaaagacga gatacccgtc aaccatcagc ctcgtaggct      2220
     tgcgccaaaa gagaaaaagg tactagataa gcaaataagc gaatggctac agtcaggtat      2280
     tattaaacct agtcaaagcg aatatgccag tccagttgtt atcgttagta aaaaagatgg      2340
     ctcaagtcga atatgcgtag attaccgttc tcttaataaa aaaataattc gcgatagata      2400
     tcctatgcct ttaattgacg ataaaataga tgcacttgca ccttttcgag tcttttcaat      2460
     aatagactta cagaacggat ttcttcacgt accagttaat aaaaatagtc agaaatatac      2520
     ggcttttgtg acaccaattg gccagtatga gttcactaga acaccatttg gactttgtaa      2580
     tagccctacc aatttcttaa gatttgtaaa cgaaatattc cgagatttaa ttcaaagatc      2640
     gattgtattt acgtatatgg atgacttgat cataccaggt gtcgatgaaa cagaagctct      2700
     ttccaaacta acagagactt taacagtagc agctaataat ggtcttaata ttaattggcg      2760
     gatatgcaaa tttttgcaac ggcgagttga gttcttaggc catataatcg agaatggatg      2820
     cgtgaaacca tccccagcaa aaattaaagc agttcaaggt ttcccacggc ctacaacgtt      2880
     caagcagtta cagagtttct tagggctcac agggtatttt agaaaattta ttaaagatta      2940
     tgcaaaacta gcccatcctt tatatgaatt aaaagaagga caacatttcc atttcggaca      3000
     gtcgcaacag ttagcctttt cgcggttaaa agatgcttta tcaagagatc cggtacttcg      3060
     aatttacaat ccgaaagcta ttacagaatt acatacagat gccagcaaac agggatacgg      3120
     ggcaacgctc cttcagagaa agcccgacga gaagcatttc catcccgttt attacctaag      3180
     ttataaaacg actgaagccg aaaagaaatg gtgttcttat gaattagaaa tactagctat      3240
     aattaaagct gttaaaaaac tgagagtata cctgctaggc attcaattta tcattgtaac      3300
     cgattgtcaa gcttttcagc gtactttaac taaagagaac ttacctccca aagttgcccg      3360
     ttgggcatta atgttagagg aattcgaata taaaatcgaa catcgtgcaa gcgaacgaat      3420
     gaagcatgta gacgcgttga gcagatttcc ggtaatgttg ctagaggata cagttctact      3480
     actaatcaaa ggcgaacaag acaaagaaga acgtttacgc gtaatcaagc aattgttaac      3540
     taaagaaccg tatgaggatt acattctaga aaatggattg cttatgaaaa agatggatgc      3600
     caaaaatatt gtagtattgc cgtcgagcat gcatcacgat gttatacgaa gaacgcacga      3660
     gaatggacat tttggtgtaa agaaaatgat agagtcgata cgcgaagagt actacattcc      3720
     aaaattaaaa gaaaaattag aacaatacgt agaatgttgt gtgccttgca ttttagcaga      3780
     aaaaagagag gaaaaaaaga aggcatgtta aagccaattc caaaaggtga cgcacctttt      3840
     agcacttatc atatggacca tttaggaccc atgacaagta cggctaaatt atacaaacat      3900
     ttgcttgtaa taatcgatgg cttttcaaaa ttcgtgtgga tttatccgac taagactact      3960
     aatactaaag aagtcctaga taagttgaca acaatgcagc aaatttttgg caatcctcaa      4020
     cgtattgtta ccgatagagg cactgcgttt acgtcgtctc aattccgcga ttattgttct      4080
     acagagaata tagagcatgt aacgataact accggagtac ctcgcggtaa tggacaggta      4140
     gaacgcataa acagaattat tattccagtt cttaccaaat tagcattaga ccatcctgat      4200
     cgttggtatc gtcaagtacc gaaattgcaa atgtgtatta atagttctta tcaaagaagc      4260
     gtaggaatga gtccttttga agttttattt ggaatcaaaa tgaaacaaca ggaagatatt      4320
     cgtttattag ata                                                         4333
//
ID   Gypsy-20_SI-LTR repbase;    DNA;    INV; 610 BP.
XX
AC   AEAQ01023379;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_SI_;
KW   Gypsy-20_SI-I; Gypsy-20_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-610
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01023379; Positions     629      20.
XX
SQ   Sequence 610 BP; 197 A; 126 C; 148 G; 139 T; 0 other;
     tgctagaaca agaatatgcg caattattta atcaagagcg tgattattta agaaatatag        60
     ctaagcaaaa tattttaaaa attcagaaag aaaatcagcg ttcgtataat aaacatcgca       120
     agaaagcatc tatctataaa gaaggtgact tagttgccat ccgcagaact cagtttgcgc       180
     caggtctcaa aattaggaca ccgtacttag gtccatataa gatttctcaa gtcaagggaa       240
     atgatagata cgaagttgta aaaatcggta ccggagaagg gcccatgatt actacttccg       300
     cagccgatta catgaaaatt tataagtttc cttcaggggc cgaaggaaaa gcagggatgg       360
     ccgaatgtgg gaatggcgat cctaacgtac gcgcgcctgg ggattaccca gcggcgacac       420
     tagcagaaga aagagcgagc gccgagcggt ggcgtgcgag tcgcgtgcgt agaagtagtg       480
     gagatataac cgccgtagcg ggcagtgagt gagcacgtgt gtaaaacagc gagcgaacca       540
     ctaatgtcat ttcctgttaa tatattgtac taactcgcac gcactgtgtt ttccctcacc       600
     cacccctaca                                                              610
//
ID   Gypsy-20_SiCu-I repbase;    DNA;    INV; 6323 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-6323
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4973-4973 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1761
FT                 /product="Gypsy-20_SiCu-I_1p"
FT                 /note="gag."
FT                 /translation="MSDQEDCQVPEKERKSSEESSSSRQGRSLRETTENQR
FT                 TFRKPARWWKTAKKTPTQSVSSDSEVFEDARAYSTSSDDAKVSKNSTKKKH
FT                 KSASSPPRSPPRRVFIQPTPVNSSKSSSTRPTPTSSTMSATIPADVLAALT
FT                 PTKQAALKAAFAAATPTFNIPTVKVKQLNTNIKIPKYHSLKKTAATYLEEL
FT                 ESYFRSQGLEPADFLDAVPATVDDEVRSWYRHKKTAAYTWNNFKADFKARY
FT                 DGDSYKLRRETYLSTRRQKEDEPVEPFVWEMMDLAKQVNPGESVAASVERC
FT                 RQALVPRLKAALAGWTTPTPENLIERCTNVITDLRCLDREEGQRRKLPPIH
FT                 PYSNDGQRGRSYQHYGRFQNRGNYRGRNYNPNYARQQEDQAKATTSQQQSS
FT                 SQQPSTSSRGARGGHQSRWQFRQQTRGNFRRFPYHNPEDHSDRMCYQCHKT
FT                 GHIAANCPTTAFYMHDGDADEEDSSVAVPPEKPLNSEGSK"
FT   CDS           1704..4940
FT                 /product="Gypsy-20_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GRFISSSTTREAFKLGGEQVAEGPAFAFPAXSKVSSC
FT                 VPKISIFSEALSIPAFIDNGSGFSSIRKSLALRLAKTFQPVGKISMMCMNG
FT                 MTIEPIGKLNLNIQIGHKKLNHDFFVYEKLPFPLFIGKDLIVESDMVIHEK
FT                 ANCFWFSDKSDAKYSMTCMRGRWVFLLQPSKLSNLNSSVQEKVDALLRKFS
FT                 KVARTDGSIGRTNIVKHKIELISDKAINCNPIYYPPKYSKQIAEQISDLLE
FT                 KGLIREVFCSKYNANIVLAPKPNGKVRMTVGYKKLNAITKDNYYPMHKGSH
FT                 ILKRLPIGGYYSKIDCNSGFWQVAMDENSVEYTTFNFEGKLFQFLVMPFGL
FT                 KNSPATFVALMNEVLNGLIGKFCYVYVDDIIVFSKTKEEHFAHLEQIFKRL
FT                 EKAGLTISXEKSQFCLREISFLGHVITQEGIKMQPEKVRAIVDLPPPKDKD
FT                 ELHSFVGMCGWYQTFIPKFSMIASPLYKVLSKNSVWKWESTHQSAFERLKK
FT                 ELISDRILSSIDYDFPIVIKTDACNLGLGAVLVQYVDGVEKVIHYASKLLS
FT                 DSERNLHTCEKELLGILWAIEKFKEYVYGEEFYIVTDNRALKYLEKFKDNN
FT                 TKLGRWALRLAPYVDKIRHIKGTENTVADALSRYSVPAKKGEPDYSGDDPD
FT                 VMFTPVFSFVEASPTFNEIREEQQKDPEIKKIYDDLASQSVRKSDSGYRLR
FT                 EGMVFKVIKKCMMKRNRKKPESSQLMSNGTGVINPQSEVHEDAASSTDAME
FT                 SGAGALWDNGKIEKLQVPVIPKSLQGKCLRLFHDSPTAGHFGVKKTRLRMS
FT                 TRLYWDGMSKDIREYVRSCDICQKVKYSNLKPAGLMGNAEIASKMFEKIYI
FT                 DFLGPFVPSVNGRNQYILVVQDELSKWVELFPLRVATTEKVILCLREVFLR
FT                 FGFPKILISDNATQFTSKKMKDFCLDRGIDHKFLSPYHPQQNQSERVNRTV
FT                 IPMICAFVNDNHSDWDRYIPEFAFALRTAVHDATGVTPALLNLGREIMLPF
FT                 DRNFNVESVDFNVEAFKRVPENMKIAIEYVRRCMRKLRMKNKQYYDEKHRE
FT                 VEYDVGQKVLVRSHILSDKQKG"
XX
SQ   Sequence 6323 BP; 2181 A; 1019 C; 1333 G; 1780 T; 10 other;
     gttggcgccc aaccaacaat taagtcaagt gtgaaaggat aatctactga aaagtgtttg        60
     taagtaactg aaaaaaatag ttttctgaag taagttgact aattcaattt taaktcattt       120
     ctgtgtggtt aataatggtt aaattgatta gttaagtaca gactgtgtgt ctaatgatag       180
     aaaaggtaca taataagtaa ttgtgagtaa attgtgtgtg agtctgaccg tttgatcgtg       240
     tcagtctcaa agtgaaatta atattatttt tagtgtttaa aagtgtagta gtgtcagaca       300
     tgttccatgt ctgaccaaga agattgtcaa gttcctgaaa aagaaagaaa atcatcagaa       360
     gaaagttcat catcacgaca aggacggtcc ttgcgtgaaa ctacagaaaa tcaacgtaca       420
     ttcagaaaac ctgcacgttg gtggaaaaca gcaaagaaaa cacccaccca gtcggtcagc       480
     tcggattcag aagtgtttga agacgcccga gcatattcca caagtagtga cgacgctaaa       540
     gtaagtaaaa attcaacaaa aaagaagcat aaatcagcaa gtagccctcc caggtcacca       600
     cctagaagag tatttattca acccaccccg gtaaatagta gtaagagttc atcaacacgt       660
     cccaccccaa caagttctac aatgtcagca acaattcctg cagatgtktt agcagcgtta       720
     acccccacca agcaagcagc cctgaaagca gcgtttgcag ccgccacacc caccttcaac       780
     atacctactg ttaaggtgaa gcaactcaac acaaacatca aaattccaaa atatcattcg       840
     ctgaagaaaa cagcagcaac atacctagaa gagttggagt catacttcag aagtcagggg       900
     ttagagccag cagattttct tgacgcagta ccagcaacag tggatgacga agtgaggtca       960
     tggtaccgtc acaaaaagac agcagcatat acatggaaca actttaaagc agattttaaa      1020
     gcaagatatg atggggacag ctataagtta cgcagagaga cttacctttc aacaagaaga      1080
     cagaaagaag atgaaccggt ggaacctttc gtgtgggaga tgatggattt ggcgaagcaa      1140
     gtcaatccag gcgagtcagt agcagcgtcg gtggaaaggt gtaggcaagc gttagtgcca      1200
     cgcctgaaag cagcattagc gggatggaca acgcccaccc cagaaaattt gatcgagcgg      1260
     tgtaccaacg tcatcacaga tttgaggtgt cttgaccgtg aagaaggtca acgtcgcaag      1320
     ttacccccaa tacatcccta ctcaaatgat ggacaacgtg gmagaagtta tcagcattat      1380
     ggaagattcc agaatagagg caactacaga ggtagaaatt acaacccaaa ttatgcaagg      1440
     cagcaagagg atcaagcaaa ggcaacgacc agtcaacagc aaagttcaag tcagcaacct      1500
     tcaactagtt cacgtggagc tagaggtgga catcagagta ggtggcagtt tcggcagcag      1560
     acaagaggta attttagaag atttccatat cataatccag aggatcatag tgacaggatg      1620
     tgttaccaat gccataagac tggacacatc gcagcaaact gcccaaccac cgcattctac      1680
     atgcatgatg gagatgcaga tgaggaagat tcatcagtag cagtaccacc cgagaagcct      1740
     ttaaactcgg aggggagcaa gtagctgagg gaccagcttt tgcattccca gcawcaagta      1800
     aagtcagttc wtgtgttcct aaaatttcaa tattttctga agctttatct atacctgctt      1860
     ttatagacaa tggttctggt tttagttcta taagaaaatc tttagcttta aggttagcaa      1920
     agacatttca accagtagga aaaatttcaa tgatgtgcat gaatggtatg acaatagaac      1980
     ccataggaaa attgaatctc aatattcaaa taggtcataa aaaactaaat catgatttct      2040
     ttgtgtatga aaaattacct tttcctcttt tcattggtaa agacttaata gtagaatcag      2100
     atatggtaat tcatgaaaaa gctaattgtt tttggttttc cgacaagtca gatgcaaaat      2160
     attccatgac ttgtatgcga ggtcgatggg ttttcctttt acaaccttca aagcttagta      2220
     atttaaatag ttcagtgcaa gaaaaagtcg atgcactctt aagaaaattt tccaaagtag      2280
     caagaaccga tggttcgatt ggtagaacga acattgtgaa gcataaaatt gaactcattt      2340
     ctgacaaagc aataaattgt aatccaatat attatcctcc aaaatattca aagcagatag      2400
     cagagcagat cagtgactta cttgaaaaag gtcttattag agaagttttt tgttcaaaat      2460
     ataatgcaaa cattgtactc gcacccaagc caaatgggaa agtgcgtatg actgtcgggt      2520
     acaaaaagct taatgctatt acaaaagata attattatcc tatgcataag ggatcacaca      2580
     ttttaaaaag gttaccaata ggcggttatt atagtaaaat cgattgtaat tctggttttt      2640
     ggcaagtggc catggatgaa aactccgttg agtatacaac ttttaatttc gaaggaaaat      2700
     tatttcagtt tttggtaatg ccttttggtt taaagaatag tcctgctaca tttgtagcat      2760
     taatgaatga agtgttaaat ggtttaattg gcaagttttg ctacgtgtat gtcgatgata      2820
     taattgtgtt ttcaaaaaca aaagaagagc acttcgctca cttggagcaa attttcaaaa      2880
     gattagagaa agctggttta acaatcagta sagaaaaaag tcaattttgt ttgagagaga      2940
     tttcattcct tggtcatgta ataacacagg aaggcataaa gatgcaacct gaaaaagtaa      3000
     gagcaatagt agatttgcca ccaccaaagg ataaggatga gcttcactca ttcgttggca      3060
     tgtgtggatg gtatcaaact tttattccaa aattttcaat gattgctagt cctttgtata      3120
     aagtgttgtc aaagaattct gtgtggaaat gggaaagtac ccatcaaagt gcatttgaga      3180
     ggttgaagaa agaattgatt agtgatagaa ttttatcaag tatagattat gattttccaa      3240
     ttgtgattaa aacagacgct tgtaatttag gcttaggagc cgtgttggtg caatatgttg      3300
     atggcgtaga aaaagtcatc cattatgctt ccaaattact aagtgattct gagcgaaact      3360
     tacatacgtg tgaaaaagaa ttgttaggaa tattgtgggc aatagaaaaa tttaaagagt      3420
     atgtttatgg agaagaattt tacattgtta cggataatmg agctttgaaa taccttgaaa      3480
     aatttaaaga taataatacc aagttgggta gatgggcttt gagattagca ccttatgtag      3540
     ataagattcg gcatatcaaa gggacggaga acacggtagc ggacgcgctg tcgcgttatt      3600
     cagttccagc caagaaggga gaacctgatt attctggtga cgacccggat gtcatgttca      3660
     ccccagtgtt cagctttgtg gaagccagcc ctacattcaa cgagattcgt gaagaacaac      3720
     agaaagatcc agaaatcaag aagatttatg atgaccttgc tagtcagtct gtgcgcaagt      3780
     ctgacagcgg gtacaggtta cgtgaaggta tggtattcaa agtcattaaa aagtgtatga      3840
     tgaaaagaaa taggaaaaag cccgagtcca gtcaactgat gagcaacggt acgggagtga      3900
     tcaacccaca gtccgaagtt catgaggatg ctgctagtag tacggatgct atggaaagtg      3960
     gcgctggagc tctttgggat aatggtaaaa tagaaaagtt acaagttccg gtaattccta      4020
     aaagtttgca aggtaaatgt ttacgtcttt ttcatgatag tcctacggca ggacattttg      4080
     gagttaagaa aactcgattg cgaatgtcaa ccagattgta ttgggatggt atgtccaaag      4140
     atattcgtga gtatgtaagg tcgtgtgata tttgtcaaaa agtaaagtat agtaatttga      4200
     aacccgcagg attaatgggt aatgctgaaa tagctagtaa aatgtttgag aaaatttata      4260
     ttgatttttt gggtcctttt gtccctagtg twaacggtag aaaccaatat attcttgttg      4320
     ttcaggatga gttaagtaaa tgggtagagt tattcccatt acgagttgcc acaactgaaa      4380
     aagttatttt gtgtcttaga gaagttttct tgagatttgg ttttccaaag atattaattt      4440
     cggataatgc tacgcaattt acttcaaaga aaatgaaaga tttttgcctt gaccgaggca      4500
     tagatcataa gtttttgagc ccctaccatc ctcagcaaaa tcagtcagaa agagttaatc      4560
     gtacagtaat tcctatgatt tgtgcatttg taaatgataa tcattctgat tgggataggt      4620
     acattccaga gtttgctttt gcgcttcgta cagctgtgca tgacgccacg ggtgtcacgc      4680
     cagctttgct gaatcttggt agagaaatta tgttaccttt tgatcgtaat tttaatgtag      4740
     aaagtgtaga ttttaatgtc gaagcattta aaagagttcc tgaaaacatg aaaattgcga      4800
     tagagtatgt tagaagatgc atgagaaaat tgagaatgaa aaataaacaa tattatgatg      4860
     aaaagcatcg tgaagtagaa tatgatgttg gacaaaaagt tttagtcaga tctcatattt      4920
     tatccgataa acaaaaaggg tgatgaaaaa attgtcatat aaatggatag gacctttgaa      4980
     ggtcgccaga cgtgtaaata gttgtacata tattatttct gatcttaatg atgatatttt      5040
     aggtaagaag catgttacag atatgaaatt gtatgttact agagaaaagt ttaattttaa      5100
     tgctccaaat cctgtgcaaa acgttcaatt agmtaatagt cagcgtccta gacgctcagg      5160
     gagaacttcc catgtwccag gaaggtataa ggtataaaaa atttttaatt ggtcataatt      5220
     aaggtaatta tggcgatcgg tctccgaaat ttggtaagat gataattaac aattagctaa      5280
     acacgtgtat aaaattttat caaaatctaa acagtcgcac atgttaaaat tgggattaaa      5340
     attaaatata cctattaaat tttaattagt cataattaag gtaattatgg cgatcggtgt      5400
     ttgaaaattg gcaagaacat tgttaacagt tagctaaaca tgtatacaaa attttatcaa      5460
     aatctaaaca gtcgcacatg ttgaaaatta ggatcaaaat ttaattcacc tagtaatttt      5520
     taattggtca taattaaggt aattatggcg atcggtgttt gaaaattggc aagaacatta      5580
     ttaacatata gctaaacatg tacacaaaat tttatcaaaa ttggtacagt cgcacatgtc      5640
     gaaaattagg gtcaaagtta agtacaccat ttgagtaata gtatgagaca taatagcagc      5700
     atgacgtcat tgcttaggta tggcagtgct ttgtgtactc tacgtaacgt cagccgtgtg      5760
     gatagactaa gtagcgttac aataatttta aagtatagat ttcaagtttt aattttagac      5820
     gtaattttaa gtgatagttc aataaattta atcaagtaat catttcaata acgcgtacaa      5880
     gtaaaataat taggtatgct taatcatgtt tcgtgttgtc tttaagtttt ctttcagact      5940
     gtcagacgaa tcaagcaaac gtctgacgtg aacaggatcg aaaggatcat cacagaagtc      6000
     tgaacgaaaa gtggctttca aacatcaacg gagaaatggc tgttcgagaa tacaactctc      6060
     aatccttcaa cgacatccca ttatggtcat ctcacttcat tgtggatcaa gatcgtgaac      6120
     agtggcaaag aagatactgt atcatcacaa aacaacagca gctagtgtct tttctcctta      6180
     tcccatacca aaatggatga gcgaagtgaa agacacgttc caggaagcag tgaggaaaaa      6240
     gaaagcgggg agccaagcag aaaggatgat catgacgcca tgaagcagtt ttcatcccca      6300
     ggaggtcttt tgcgggtgga gaa                                              6323
//
ID   Gypsy-20_SiCu-LTR repbase;    DNA;    INV; 695 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-695
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5097-5097 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 695 BP; 237 A; 159 C; 129 G; 169 T; 1 other;
     tgtagcgttc cacctttcaa gtaagcttgc ttacttgcta ccaacaccac cacctttact        60
     tactatatgt aagccaacaa caagtaaagc aaaccacctt ctcagcatca agctgattgg       120
     ccmaaaagag acgctctcgt ctcgctcagc agcgccgcac aagtagcgca tagcacagca       180
     ggccatgcag caggcatgaa ccaaccacgt acacttcgtg ctggaaatcc actcacgccc       240
     aaaccagcag agatcgagag gaagcccaaa gccaagccac caagagaaca actaggaagg       300
     aagacgacgg agctggactc accagtctgg ctaggagaac ggaacgagca acatcgtata       360
     gtagtagtag tagtaaaaga agataacata ttttactttt ccgtttccaa tttccattaa       420
     agtttctgag tagtaaaaat taaataaaaa cgtttccatt attattatta tattaaatac       480
     tgtgtgtaaa acaagagcat tcatttattc agtcatcagt agattatcag tagaaccgcg       540
     acctgagata aagcatctta aataaatcag tatcatcatc attaaagtaa ttgagcattt       600
     agttagttgt gtttgtcagc gctgtggtcc tataatagtt agccgactca tcaaatcatc       660
     agcatcataa taaaaaggtc accacgagcg ttgca                                  695
//
ID   Gypsy-20_SiOr-I repbase;    DNA;    INV; 4885 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4885
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 356-356 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..3281
FT                 /product="Gypsy-20_SiOr-I_1p"
FT                 /translation="MPPKRKVKKNSKYFEDNVSEEENSQSDFSEMFLKFGS
FT                 DIGKLQETVANLSLKLENKNEPKSDVQPHMQSHTDNVNNFNFYILNWRELG
FT                 GSNLSFHPNGKVHPMVFLRKLKKTFIDAGVPPEKQTSLAINCLKGSAADWA
FT                 SLREHTFKNFNDFENAFGDRFWGVDKQRELYLELNYGKFESGKRADYFLHM
FT                 VNQASFLSTPIPENNLIEKLSKHFSPEIERGIITLGFKTIDEIQNYLYRLD
FT                 EADARQSDFSYTSLAARRDQRVNVNGQVRRGGAGGGVDRSGDFSRNNGRWR
FT                 DNSDRRPNNSREEGRQDRTDDNICMLSNFIQKSEDLLTDSDGEISSEEDND
FT                 FKSPIIQGDICNEKVEILLDSGSEVSAISQDFYERIKSKQNIPILPVTNRS
FT                 IMIAIGVKPYRIKNQVLLTIILDKIKFDVPCLIIPKLNRDILFGSDWMKVF
FT                 SAKLDFKNKMLKFTVDKENYNVKFVKPQDYTEVESLVINKIELTRNNSTID
FT                 DKGKIKQRHVYDSTDLELVVNKSNLEKDRDKSKLLAILTEYKDVFSESPGL
FT                 VNNYVHHINMKDTECFNPQLYPIPLCYKAEVRKYIHEMTEMGIIKPEYTEY
FT                 VSPLVIVKKKDKTIRVCLDARFLNSKMNKDFVNPPNPHEILFNFKQGQVLS
FT                 TIDLTSSYWQIPIKKEDQKYVGFIFEGLSYTFNRVPFGLSTSMASLIRCLT
FT                 KILGVTDYLLVYVDDLVIFSDSIDQHLQHLNIVLRKLKLAGMTIKLRKCQF
FT                 FRNEVHYLGHIISSQGVMIDKIRVKSINEFPRPINIKALRAFLGLVNYDKR
FT                 FCNNYSELTLPLLNLLKKNQTWKWNEVHEKAFQDIKMLYLKVTMVYHCDLN
FT                 KEFYIECDSSNYAIGGCLYQLNDNDKQVIAYHSQTLKPHQHNYTVTEKELW
FT                 ALICCLKQWRFVLLGHRLIIRSDHKSLEYMLTCRLKGARLTRWILFLQEFN
FT                 FEIQYIRGTNNITADVLSRYPVKNNIKSEFF"
FT   CDS           3208..4593
FT                 /product="Gypsy-20_SiOr-I_2p"
FT                 /note="integrase."
FT                 /translation="EVQIILLRMSYRAIRLKIILNLNFFNVQNTSLKSISL
FT                 MQLPGYYSELKKNLKKLRLDQLAEPWIKRNIKLLEETNHEKILNSREKRVI
FT                 KCFILHEGLLFKNHDLGYKGYRLCVPQSQVFELVKQQHEYIGHFGKTKTFW
FT                 YMQKYFYWPKMSKMVRQIVAACELCQKSKTSPTNFGPTQAVVPKKPGELVC
FT                 VDFMGPLPQGRGGVTQLFVIVDAFSKYVKLYPLRRATASATLKRLFEDYIP
FT                 NVQKPKCILSDNGTQFSSLQWNERLTNANIKVKKISVYFPQGNITERYNKE
FT                 IGRLLRAYCHEQHTKWPNQLSWVELCLNHIINESTGYTPAFLQFGRTRQNV
FT                 VERFISYPKVENAPVDLNKYWILAYENLKSKAERRIAKQNLKINPVIFKPG
FT                 DLVLVKKHAQSSAENKIIKKFILLYEGPYIITRIAGPNSYIISTKEGEELL
FT                 GKRNVRDLKQYKEYKND"
XX
SQ   Sequence 4885 BP; 1759 A; 654 C; 948 G; 1524 T; 0 other;
     taaattggcg ctcaactaga ggcttgaggt agaagtttgg aagaagaaat ccggaaggag        60
     ttgcagtaaa aacaagtagg atcgtttttt tatttactta tagtgggagt gtacatcatt       120
     gggtacctat actaaagaaa aatattctct aaagtggaca tatagagata taaaaggaaa       180
     aactatatta ttattttatt tgtgttttta taaaagaagt tattggtttg tcagtatata       240
     ggacagtata tatcatagta tatatcatat taatacaata ttgttaattt catatatgca       300
     aatcttatat aaaaagaaat ataatgcctc caaaaagaaa agtgaaaaag aacagtaaat       360
     attttgagga taatgtttca gaggaggaaa acagccagtc cgatttttcg gaaatgtttt       420
     tgaaatttgg ttcagatatt ggaaaattac aagaaaccgt tgctaacttg tctttgaaat       480
     tagaaaataa aaatgaacca aaaagtgatg tacaacctca tatgcagtcg catacagaca       540
     atgtaaataa ttttaatttt tatatattaa actggagaga attagggggg tcgaatttga       600
     gtttccaccc taatgggaaa gttcacccta tggtgttctt aagaaaactc aagaaaactt       660
     ttattgatgc tggggtacct ccagaaaaac aaactagctt agctataaat tgtttgaaag       720
     gctctgcagc tgattgggca agtcttagag aacatacatt taaaaatttt aatgattttg       780
     aaaatgcttt tggcgatagg ttctgggggg tcgataaaca aagagagctt tacctcgaac       840
     tgaattacgg taagttcgaa agcggcaaac gcgcggacta ttttctacac atggtaaatc       900
     aggctagttt tttatcaacg cctataccgg aaaacaattt aattgaaaaa ttatcaaagc       960
     atttttcacc ggaaatagag aggggcatca tcactctggg ttttaaaact attgatgaaa      1020
     ttcaaaatta tttatataga ttagacgaag ccgacgctcg gcaaagcgat ttttcctaca      1080
     cgtctctagc ggcgcggcga gatcaaagag tgaacgtgaa cggccaagtt agacgcggcg      1140
     gcgcaggggg cggcgtagat cggagcggag acttttcgag aaataacggt cgttggcgcg      1200
     acaacagtga taggaggccg aataattcgc gcgaagaagg aaggcaggac cgtaccgatg      1260
     ataatatttg tatgttgtcg aattttattc aaaagtctga ggatttattg acagattccg      1320
     acggtgaaat tagtagtgag gaagataacg attttaaatc acctattata cagggcgata      1380
     tctgtaacga aaaagttgaa attttattag acagtggtag cgaggtgtcg gcaatttcgc      1440
     aagattttta tgaaagaata aaaagtaaac aaaatattcc tatattaccg gttacaaata      1500
     ggtcgataat gattgcgatt ggtgtgaagc catatcgaat taaaaatcag gtcttgttaa      1560
     caattatttt agacaaaatt aagtttgatg ttccgtgttt aataattcca aaattaaata      1620
     gagatattct attcggatct gattggatga aagtattctc cgcgaaactt gattttaaaa      1680
     ataagatgct taagtttaca gtagacaaag aaaattataa tgtgaaattt gtaaaaccgc      1740
     aagattatac cgaggtagaa tctttagtta taaataaaat tgaactaact aggaataata      1800
     gtactattga cgataaagga aaaataaaac aaaggcatgt ttacgatagt acagaccttg      1860
     agttagtagt aaataaatca aatttagaaa aagataggga taaatctaaa cttttagcaa      1920
     tattaaccga atataaagac gtattttctg aaagtccagg gctagttaat aattatgtac      1980
     atcatattaa catgaaagat acggaatgct ttaatccaca gttatatccg attcctttat      2040
     gttacaaagc ggaagtaaga aaatatatac acgagatgac agaaatgggt ataattaaac      2100
     cagagtatac agagtacgtg tcacctttag taatagttaa aaagaaagat aaaactattc      2160
     gagtttgttt agatgcacgt tttttgaatt ctaagatgaa taaagatttt gtaaatccgc      2220
     ctaatccaca cgagatttta tttaatttta aacaaggtca agttttaagt accattgatt      2280
     taacgtcatc gtattggcag atcccgatta aaaaagaaga tcagaaatat gtagggttta      2340
     tttttgaagg attatcgtat acttttaata gagtaccttt tggattatca acatctatgg      2400
     cgagtttaat acgctgcctg accaaaatat taggggtgac ggattattta ctagtatatg      2460
     tagatgattt agttatattt tccgatagca ttgaccaaca tttacagcat ttaaatattg      2520
     ttttaaggaa gttaaaatta gcgggcatga caattaaact acgaaaatgt caattctttc      2580
     gaaatgaggt gcattatctc ggacatatta tttcttctca aggggttatg atagataaaa      2640
     tcagggtaaa atctattaat gaatttccaa gaccgattaa tattaaagca ttgagagcgt      2700
     ttttaggttt agttaactat gataaaagat tttgtaataa ctattcggaa ttaacattac      2760
     cgttattaaa tttactaaaa aaaaatcaaa catggaagtg gaacgaagta catgaaaaag      2820
     cgtttcagga tatcaaaatg ttatatttaa aggttactat ggtatatcac tgtgacttaa      2880
     ataaggagtt ttatatcgaa tgtgacagtt cgaattacgc aatcgggggt tgtttatatc      2940
     aacttaatga taatgataaa caagttatcg cttatcacag tcaaacgtta aaacctcacc      3000
     agcataacta tactgtaacg gaaaaagaat tgtgggcttt gatctgttgt ttgaagcagt      3060
     ggagatttgt attgttaggt cacaggttga tcatcaggag cgatcacaaa tctttagaat      3120
     atatgttaac ttgtcgattg aaaggggcac gtttgacacg atggatttta tttctgcaag      3180
     aatttaattt tgaaatccaa tatataagag gtacaaataa tattactgcg gatgtcctat      3240
     cgcgctatcc ggttaaaaat aatattaaat ctgaattttt ttaatgttca aaatacatcg      3300
     ctaaaaagta tttcgttgat gcaattaccg ggctattatt cggaattgaa gaaaaatctg      3360
     aaaaagttac ggctagatca attagcagaa ccatggatca aacgtaatat taaattactg      3420
     gaggaaacta atcatgaaaa aatattaaat tcaagggaga aacgtgttat aaagtgtttt      3480
     attttacatg aagggctctt gtttaagaat catgatttgg gatataaggg atatcgtctt      3540
     tgcgttccac agtctcaagt ttttgagtta gttaagcaac agcatgaata tatcggacat      3600
     ttcgggaaaa ctaaaacctt ttggtacatg caaaaatatt tttattggcc gaaaatgagt      3660
     aaaatggttc gacagatagt agcggcatgt gaattatgtc agaaatcaaa gacttctcct      3720
     actaattttg gtccgactca agcggtggtt ccgaagaaac caggggaatt agtgtgcgta      3780
     gattttatgg ggccgttgcc acaaggaagg ggtggtgtga cccagctatt tgttatcgta      3840
     gatgctttca gtaaatatgt aaaattatat cctttgcgga gagctaccgc atctgctaca      3900
     ctaaaacgac tttttgaaga ttatattcct aacgttcaga aacccaaatg tattctaagc      3960
     gataatggta ctcagttctc ttctttgcaa tggaatgaaa gattaacaaa tgcaaatatt      4020
     aaagttaaaa agatttcagt atattttccg cagggtaata ttacagaaag atacaataag      4080
     gaaataggtc gattattaag ggcgtattgt catgaacagc acactaaatg gcctaaccaa      4140
     ttatcttggg ttgagctatg tcttaatcat attattaatg aaagtacagg ttatacacca      4200
     gcatttctcc aatttggacg cacacgtcag aatgtagttg aaagatttat aagctatcct      4260
     aaagttgaaa atgcaccggt agatttaaac aaatattgga tactagccta tgaaaatcta      4320
     aagtcaaaag cagaacggcg aatcgcgaaa caaaatttaa aaataaatcc ggttattttc      4380
     aaaccaggcg atttagtttt ggttaagaag catgcccaat catctgcaga aaacaaaata      4440
     attaagaaat ttatcttact ctatgaggga ccttacatta ttactcgaat agcggggccc      4500
     aattcttata taatttctac taaagagggt gaggaacttc taggaaaaag aaatgttaga      4560
     gatttaaaac agtataaaga atataaaaat gattaaaaaa gactgcatag gagggcaatc      4620
     ttaatattat gttaaaaaaa aaatgttaat tctttcagaa aacaaaaaaa aacttgttag      4680
     ttagctatta gtgttagttt tggagcaatt tggtttgcat ttacacttat ttgttcttgt      4740
     tatgtaagca gttttctttg cgattatttt atttgtgaat tttataccat attattatgt      4800
     tctagtggta atgagctgta atttctatgt ttgtcagcta cttaaatgtt tatactccgt      4860
     atttagattt aagtaggggg ggtga                                            4885
//
ID   Gypsy-20_SiOr-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 389-389 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 304 BP; 78 A; 67 C; 87 G; 72 T; 0 other;
     tgtgacggtt ctgtttagtg cgggcagtgt atagttacga aggatccaga caaaggagcc        60
     gacggcggta gcggtcgcca gcccggtgaa gaggggggcg agcggacgaa aggagtcgag       120
     gcggcagtcg ggtgtcgacc atgattaggg acacttagac tacgtaattt tttttagtat       180
     taagtaaaac tttgttatct gagtcaaatt aataaatcga ccacttgtgc acacgattcg       240
     tcttctcttc ctcaacccga acacccagac cctgggagca gtatccgtct aagagactgc       300
     tgca                                                                    304
//
ID   Gypsy-20_SpEx-I repbase;    DNA;    INV; 3974 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3974
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4089-4089 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..898
FT                 /product="Gypsy-20_SpEx-I_1p"
FT                 /translation="MDKDFQDAHGPTMPLSTQRSNTSDVGESIKNIDIFKV
FT                 GTRLPPFWPEEPEVWFGQVEGQFAISGITSDSTKFHYVISQLDTQYAREVK
FT                 DLIISPPTSNKYDKLKVELIKRLTASKEKKLKQLLMHEELGDRKPSQFLRH
FT                 LKSLAGVNVPDDFLKTIWISRLSHGIQTVLAGQPPTATIEDLADLADRIQE
FT                 LAAPSPSVASTSAASPNSALDVLVREVAELRRQVQQLSAGRKSRSHTRSTR
FT                 SPHHRSASRSTRSESNYRKFPLCWYHGKFGEKASKCVTPCDYKSGNARGGR
FT                 "
FT   CDS           829..3951
FT                 /product="Gypsy-20_SpEx-I_2p"
FT                 /translation="IRRKGQQMRNPLRLQIGKRQGRSIMATADCPATPTGR
FT                 LFITDRTSKMQFLVDTGSDLCVFPRSHLRDRRAKTDYNLCAANGSTISTYG
FT                 YVYFNLDFGLRRVFSWRFVVADVTKPIIGVDFLNYYCLIVDCRNKRLLDSS
FT                 TSVSSAAKVVRCSDIASVKVLTGETQYHKILSEFPEITRPAGKPHCTSHNT
FT                 VHHIRTTPGPPVYSPPRRLAPDKLKIAQKEFQSMLTLGTARPSESPWASPL
FT                 HLAPKKNNGWRPCGDYRKLNARTVPDRYPIKHIHDFTHSITGCKVFSTLDL
FT                 EKAYNQIPVSPDDIPKTAITTPFGLFEFPFMTFGLRNAGQTFQRFVDEMTR
FT                 GLDFVYCYLDDFLVFSKSPEEHEDHLRQVFNRLKDYGMLVNTSKCVFGMEE
FT                 VTFLGYRITEYGTRPLDSKVQAIKDFPPPTNVRQLRGFLGMLNFYRRFLPN
FT                 AAEIQGPLHALLTGSVKGSQPISLTGDTLAAFEACKESLTNAALLAHPDCT
FT                 AKLAVVTDASDKAIGAVLQQYKNEAWQPLGFFSRKLSPSQVKYSPYDRELL
FT                 AIYEAIKYFRHMLEARHFIVYTDHKPISFAFHERKNSCSPRQYRHLDFISQ
FT                 FTTDIRHISGKDNVVADTLSRIEELADPVDLEKLAQAQTSDSELCKLLSEG
FT                 SSLQLKKFTVPGSGIPVYCDVSTSASRPYVPKSFRKQIFNSLHSLSHPGAN
FT                 ASAKLIAERFVWPGVRKDCRNWARACIPCQRTKVNRHVTAPLGTYNLPRAR
FT                 FKQIHIDLVGPLPVSQGYRYCLTAVDRFTRWPEAVPIQDITAETVAKALLS
FT                 IWISRFGCPTDIVTDRGRQFESSLFQCLSKIAGFEHKRTTAYHPACNGLVE
FT                 RFHRQLKAAIVCHANDRWTESLPWVLLGVRSAFKEDLQASSAELLYGEPLR
FT                 LPGEFFEPTVDGTVDTAEFTTRLRNFAKKLRPVPASRHCNPKVFIYKELET
FT                 CDYVFLREDALRGALQPAYSGPYKVVTRRDKVFKILVKNKEVTVSIDRLKP
FT                 AFILSDTVEEPPPTVPPSYTTRSGRRVKFTDFYRP"
XX
SQ   Sequence 3974 BP; 1068 A; 1010 C; 911 G; 985 T; 0 other;
     ctggtgaccc ctattttgaa ccatggacaa ggactttcaa gatgcacatg gtcccactat        60
     gcccttgagc actcagaggt caaacactag tgatgtaggc gagtcgataa aaaatatcga       120
     tattttcaaa gtcggcacgc gcctgccacc attttggccg gaagagccag aagtttggtt       180
     cggacaagtg gaaggtcaat tcgcgatatc aggaatcacc agcgactcaa ccaaattcca       240
     ctacgtgatc agtcagctgg atacccagta cgcgagggaa gtaaaagacc ttattatcag       300
     tccgcctaca tcaaataagt acgacaaact taaagtcgaa ttaattaagc gactgacggc       360
     gtctaaggag aagaagctta agcagctctt aatgcacgag gagctcggag acagaaagcc       420
     ctctcaattt ctccgtcacc tcaaaagtct cgctggcgtg aacgttcctg acgatttttt       480
     aaagacgatc tggataagtc gcctctctca cgggatccag acggtgctag caggccagcc       540
     accaacagcc accatagagg acttggcaga cttggctgac cgcatacagg agttggccgc       600
     accttcacca tctgtagctt ctacgagcgc agccagtccc aactctgccc tggatgttct       660
     cgtcagagaa gtcgccgagc ttcggaggca ggtccaacaa ctcagtgcag gcaggaagag       720
     cagatcccat acgcgatcta cgaggtcgcc gcaccataga tcagcatcca ggtcgacacg       780
     ctcagagtcg aattacagga agtttccact gtgctggtac cacggtaaat tcggagaaaa       840
     ggccagcaaa tgcgtaaccc cctgcgacta caaatcggga aacgccaggg gcggtcgata       900
     atggcgacag ctgactgccc tgcaactcct actggtcgcc tgttcatcac agaccggact       960
     tcgaagatgc agttcctcgt cgatacagga agcgacctct gtgtcttccc ccggtcccac      1020
     cttcgtgatc gacgtgccaa gacggactat aatttgtgtg ctgcaaatgg ttctaccatc      1080
     tcgacttacg gttatgttta ctttaattta gattttggct tgcgtagagt gtttagttgg      1140
     cgtttcgtag tagcagacgt tactaagcct atcataggcg ttgatttttt aaattactac      1200
     tgtcttattg tagattgccg taataaacgc ctgttagata gtagtacttc tgtttcctcc      1260
     gcagccaaag tagttagatg tagtgacata gcatccgtca aagtcttgac tggcgagacc      1320
     caataccaca agattctcag cgagtttccg gaaattactc gaccagccgg taagccacat      1380
     tgcacatcac acaatactgt ccaccacata cgcacgacac caggcccccc agtttactct      1440
     ccacctcgtc gtttggcgcc ggataagctc aagatcgccc aaaaagagtt ccagtctatg      1500
     ctgacccttg gtacagctag accttctgag agtccatggg cgtcaccgct acacctggcg      1560
     cccaagaaga ataatggctg gcgtccatgc ggcgattacc gtaagttgaa tgcccgtacc      1620
     gttcctgaca gatatccgat taaacacata cacgacttta cccacagtat aactggatgt      1680
     aaagtcttca gtacactcga tttagagaaa gcatataatc agatacctgt cagtcccgat      1740
     gatataccta agaccgccat tacaacccca tttggtctat ttgaatttcc atttatgacg      1800
     ttcggtctta ggaatgcggg ccaaaccttt caacggttcg tagatgaaat gacgagggga      1860
     ttagatttcg tgtattgcta cctggacgat tttctcgtgt tttctaaaag cccagaggaa      1920
     cacgaggacc atttacgaca ggtattcaac aggctgaagg attatggtat gttggtgaac      1980
     acctcgaaat gcgttttcgg tatggaggag gtcacatttt taggctaccg tattaccgaa      2040
     tacggtacta ggccacttga ctccaaagtc caggccatca aagacttccc cccgccaacc      2100
     aacgtccgtc aacttagagg tttcttaggc atgctcaatt tttataggag attccttcct      2160
     aatgcagccg aaattcaagg cccacttcac gccttattaa caggctccgt caaaggctca      2220
     caaccaattt ctttgacagg tgacacactc gctgctttcg aagcctgtaa agaaagcctg      2280
     accaacgctg ctcttctagc tcatccggac tgcacagcta aacttgcagt tgtcacagat      2340
     gcttcagaca aggctatcgg tgcggtcctg cagcaatata aaaatgaagc gtggcagccc      2400
     ctaggtttct tttcacggaa attgagtcca tcacaggtga aatactcacc atatgatagg      2460
     gagcttctag caatttatga ggccattaaa tattttagac acatgctaga agctcgccat      2520
     tttatagtct atactgacca taagcctatt agctttgcct tccatgaacg gaagaatagc      2580
     tgttcgccca ggcagtatag acatttagat tttatttcgc aattcacgac ggatatccgc      2640
     cacatttctg gcaaggataa tgtggttgca gataccttgt cgcgaattga agagctagca      2700
     gaccctgtag acctcgaaaa gctagctcaa gctcagactt ctgactcaga actctgtaag      2760
     cttttgagcg aaggttcttc tctgcagctc aagaaattca ctgtccctgg aagcggaatt      2820
     cccgtttact gcgacgtcag tacgtcagct tccagaccat acgtacctaa atcattccgc      2880
     aaacaaatat ttaatagttt gcactcctta agccacccag gtgccaacgc gtcggccaag      2940
     ttaatagctg agagatttgt atggccaggc gtgcgaaaag actgtaggaa ctgggcacgc      3000
     gcttgtatac catgccagag gacgaaagtc aaccgtcacg tgactgctcc tctaggcact      3060
     tataacttac cgcgcgcacg gtttaaacag atccatattg atctggtagg ccctcttcca      3120
     gtttcccaag gttatcggta ctgtttaacg gccgtggata gatttacacg gtggccagag      3180
     gcagtaccga tacaagatat tacagcggaa acggtggcca aagctttgct gtccatatgg      3240
     atatctcgtt ttggttgccc gacagatatt gtaactgatc gcggtcgcca gttcgaatcg      3300
     tccttgttcc aatgcctgtc gaagatagca ggattcgaac ataagcggac gacagcctac      3360
     catccagcat gcaacggttt ggttgaacgg ttccaccgcc agctgaaggc cgcgatcgtc      3420
     tgccatgcaa acgacagatg gacagaatcc ttaccatggg tgttattggg cgtaagatct      3480
     gcctttaaag aagacctcca agcctcttcg gcggaactct tatacgggga gccgctaagg      3540
     ttgcctggag agttttttga gccaactgtc gacggtacag ttgacacggc tgaatttacc      3600
     acaaggctca gaaatttcgc taagaaactg cgacctgtcc cagcttcccg gcactgcaat      3660
     cccaaggtat ttatttataa ggagctagaa acttgcgatt acgttttcct ccgtgaagat      3720
     gcattgcgag gtgctcttca acctgcttat tctgggccat ataaggttgt cacgcgaaga      3780
     gacaaagtat tcaagatact agtaaaaaac aaagaagtga cagtatccat cgaccgacta      3840
     aagcctgcct ttattttatc tgacacggtg gaagaacccc caccaacagt gccgccaagt      3900
     tacacgacac gttctgggag gcgagttaaa tttactgact tctatcgccc ttgacggtct      3960
     ctggaggggg gtgg                                                        3974
//
ID   Gypsy-20_SpEx-LTR repbase;    DNA;    INV; 608 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-608
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4149-4149 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 608 BP; 188 A; 139 C; 77 G; 204 T; 0 other;
     tgtaggtaac tgtacaaatt atttaattta tttacatctt aaaactaaac ttacaaacta        60
     acaaaattac agttaataat atatactata tacatatacc tacacacatt tatatacata       120
     tttacatttt gttcacaata cttatgtata atacctaata cataatactt ccttaccagt       180
     tggtcgataa aatttccttc gatagtcgat aatacaaaaa ctatcgactg gaccctcacc       240
     actaatcacc aatatagtta taactatccc taactattga tgatcgcttg ccgatgcgcc       300
     cgcacacacc tgtggaacca gtcttgccga gacattgcta agacgcgcat ttattgtaat       360
     tcttccgcta tcctaacgct gtgataatta cgctatttct gttttctact tctttcttat       420
     tattagtatt gactatttct acaactatct ctgtgctgtg cttgtgtatg tgcttgaact       480
     gtcctactgt gccttctgta actcgtgtgt gccggatcgg ccaaataaac ctggtgatac       540
     gtgagtcgaa cttttattta caccacagaa tacccgacac cgtcaacaca cacaacaatc       600
     catctaaa                                                                608
//
ID   Gypsy-20_SpFr-I repbase;    DNA;    INV; 6541 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6541
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1882-1882 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~89% identical to
CC   that of Gypsy-15_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           737..5656
FT                 /product="Gypsy-20_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MERGSSGEKQCRSRRLRTPLLPGSPILPTMGVERDAG
FT                 NSGGMRRSRSRVRHEHGSKDRSRSRSRSRHRTHSIQRSHHSNRELSYQNQN
FT                 TNRNLLKNRPSRRREIYGGNQQRSRSRSRPRSSRHSRSHSRREANRRSRSG
FT                 TRKRNDENDELRERLCLLEQELKRQRSRNVISHDVAGSHRQQFSPSRIIRS
FT                 PLESDNENPGSQRPRVEPAKFFEEFVNIFKGRDRESFPVLKNVLPDFDPLS
FT                 REQTIEMWISKVDECAEIYNWNDRQTVHYALPKLVGHAKTWYQGLPTIRHS
FT                 WEEWKALLRESFPSTENYAELLTEMLNRKARLGDSLELYYFSKINLLNRCK
FT                 IFGKQAVDCIIFGIEDKSIRLSAQAGKFNKPEETLEFFKTVKSHPREYSES
FT                 IRREGTNRDKRFQSSTSIATSSEPSKIVDKTFRNRPKGNAVCFNCKEAGHM
FT                 SFQCRKPITKCSECNFLGHDSNTCPKKTSSNSNVSSKNDSKPKSVLEVSIN
FT                 DDSNDKYRVGIKINSVVIACQVDLGSQVTLIRKTDAHKIGLQWDTVQGPLL
FT                 RGLGSIPYLPVGKAFVTIEIQDVREEHVEVLIVDDSLINIPVLLGHSFTER
FT                 PNLRIVKTATDLRIEKVDVSGEAKLLLITVDDFELDIGELRAVSVGAKTNY
FT                 SGNIYVGGSIRGRPDREYYLLPGEYQMTDGVCRVLIQSLSSHKIRFNKNTL
FT                 VSRARTTFSQNRLLDVLQINTDSVNGTHGNSVKMGEGLTISEKDKCQALLS
FT                 KYKACFSTGLHDLGYTSVAEMEIHLTDTTPVVYRPYRLSHSERAYVQGLVE
FT                 EMVEHGIIRESSSPYASPIVLVQKKSGEKRLCVDYRALNRRTKRDHYPLPR
FT                 IEDLLDQLSGQSLFTTLDLASGYHQIAIAEASKEKTAFVTPEGQYEYNRMP
FT                 FGLANAPAVFQRVIHKILNKTKVPFVIIYMDDILIPSKTFDEGLQRLEQVL
FT                 SLLLDAGLTLKMEKCNFFQEKIVFLGFEIGKFGIRPGEQKTQAVSKFPVPR
FT                 NQSDVRRFLGLAGFFRRFVKDFALLARPLTNLLRKDTAWHWAESQQNAFDT
FT                 LKRLLVERPILALYDHRAETQLHTDASKFGLGGILMQKNGNNSWQPVSYYS
FT                 RQTSADEQKLHSFELETLAVINALNKFRTYLLGIKFTIVSDCNALRSTFTK
FT                 RDLIPRISRWWIQFLEYDCXIEYRPGEKMTHVDALSRGAIVDQQETIHVLD
FT                 ILNVSADDWISTVQSADEEVRRIKEIVQDPETAKIAAVHKEYQVKNGRVYR
FT                 VIEGGGLRWLVPRGVRWQVLKTNHDDVGHFGFEKTLQRIKSTFWFPKMRKF
FT                 IRKYVSACLECAHHKVPSGAKEGMLHPIPKVDVPLHTVHADHLGPFPRSKH
FT                 GNMYILVIVDSFTKYVYLSAVRSTKSKASIKVFKTYFSLFGCPSRLITDRG
FT                 TSFTSKRFKTFVQSVGVKHILNSVATPRANGQVERYNRTILASLGSMTHGK
FT                 SSDIWDTFLPDVQLGINTSIHDVTKRSPTELLFGRKLGNPSQGILNNVSED
FT                 ILISETNESIEQIRSDASDRIKENQNKNKDRFDKHRKSPNKYKEGDLVRVV
FT                 RSIVSGSGKSKKLESKCQGPYRIKKILPNDRFIIVDTPLTRKGKAYENVVA
FT                 IDKIYPWMSFDAPSCSSSDESI"
XX
SQ   Sequence 6541 BP; 2070 A; 1209 C; 1432 G; 1824 T; 6 other;
     gctcagaagt gggataacag caaaatatat tgttttgcta cgcccacaag tcaacatcta        60
     aggtacgtga tttttttttt ccttgataag taggtaccta tgtagattgt gatgccgttt       120
     ttgtttattg aaagggctgt attcaactga tgtgaataca atttcaaatg aatcggttgc       180
     agcattggtt gtaataggat aaataacgcg tcgttagaca cgatgcgacg taaagaaaaa       240
     tagcgcatcc ttttctacga agatagaaaa ttcaatcagc agaaggcggg ctgtcaaagt       300
     tacattttgt tttttttttt tttataaatt gacacaatgg cttttgagcc atccccagaa       360
     ttattatttt ttttttttat atacaacgga aawaaatcat aatacggtta ctaaatagtg       420
     ctacgattaa ttatttttca ttttgattac aatggaactg aaaataaagg ttaagatctg       480
     tgatgcgatt ggattgaact agtaactccg tattttgcaa tgagtcttga aaaatatacc       540
     cataattggt agtggagcgg gtagtcaagt acgttaccta tgcacaacaa tagggaactc       600
     aagacccggg cgtgatgaac atcgattaaa gaggatttaa ccttagaaat tcttttgctt       660
     cttttttttt ttttcttttt twwaaaaatt aacctcaaga caaggtatac aagaaatttg       720
     tttcgagttt cagataatgg aacgaggtag ctctggtgag aaacagtgtc gaagtcgtag       780
     acttcgaaca cctttgctcc ctgggagccc aatactacca acaatgggag tcgaacgtga       840
     tgcagggaac agcggtggta tgcgacgaag ccggagccgc gtgaggcacg aacatggaag       900
     taaagatcga agccgaagcc gaagccgaag ccgtcaccgc acccacagta tccaacgtag       960
     ccaccacagt aaccgtgagt tatcatatca gaaccagaat acaaaccgta acttacttaa      1020
     gaatagaccc agtcgcagac gggaaatata tggtggaaat cagcaacgca gtcgcagtcg      1080
     cagtagacct agaagcagcc gtcatagccg tagtcattct cgcagagaag ccaatcgacg      1140
     aagtcgcagt ggtactcgta aacggaacga tgagaatgat gagttgcgtg agaggctatg      1200
     cctgttagaa caagagttga agagacaacg tagccgcaac gtgatatcac atgatgtcgc      1260
     tggcagccac cgacagcagt tttccccgtc cagaattatt cgtagccccc tcgaaagtga      1320
     caatgagaac ccaggttccc agcggccaag ggtcgagcct gctaagttct ttgaagaatt      1380
     tgttaatatt tttaagggca gggatcgtga atcgtttccc gtgctaaaga atgttcttcc      1440
     tgattttgat ccgctttctc gagaacagac catagagatg tggataagta aagtagacga      1500
     atgcgcggag atctataatt ggaatgaccg tcaaacggtt cactatgccc tgcccaaact      1560
     tgtaggacat gctaagacct ggtaccaggg cttgcctact attaggcatt cgtgggaaga      1620
     gtggaaggct ttattgagag aatctttccc gtctaccgag aactatgctg aacttctgac      1680
     cgaaatgctt aatagaaagg cgcgccttgg tgactcctta gaactatact atttttccaa      1740
     gataaactta ttaaatagat gtaaaatatt tggtaagcag gccgtagatt gcataatatt      1800
     cgggattgaa gacaaaagca ttcggttaag cgctcaagca ggaaaattta acaaacccga      1860
     ggaaacttta gagtttttta agacagttaa gtctcaccct agggagtata gtgagagtat      1920
     tcggagagaa ggaaccaata gagataagcg ttttcaaagt tctacttcaa tcgcgaccag      1980
     ctctgaacca tctaaaattg ttgataaaac ttttagaaat cgaccgaaag gaaatgcggt      2040
     ttgcttcaat tgtaaggaag ctggtcatat gagctttcaa tgtcgtaaac caataaccaa      2100
     atgctctgaa tgtaactttt taggacacga ctcaaacacc tgccctaaaa agacctccag      2160
     taactctaac gtctctagta aaaatgatag taaacctaaa agtgttcttg aagtatccat      2220
     aaatgatgat agcaatgaca agtatagagt aggcataaaa ataaacagcg tagttattgc      2280
     ttgtcaagtt gatttaggta gccaagttac tcttatacgt aagaccgacg ctcataaaat      2340
     tggtcttcag tgggacaccg tgcagggtcc attgttgaga ggattaggca gtattcccta      2400
     tctacccgta ggtaaagctt ttgttacaat tgagatccag gatgtaagag aagaacatgt      2460
     tgaggtcctg atagttgatg attcactcat aaacattcca gtactccttg ggcacagttt      2520
     tacggaacga cctaatttaa gaatagtaaa gacagccact gatttacgaa tcgaaaaggt      2580
     tgatgtaagt ggtgaagcta aacttctgct tattacagtt gatgattttg aattagatat      2640
     aggagaactt agagcagttt cagttggagc taaaacgaat tatagtggta atatttatgt      2700
     tggaggctcg ataaggggta gacccgacag ggaatactat ttgttacctg gtgaatatca      2760
     aatgaccgat ggagtgtgcc gcgttctaat acagagctta agttctcata aaattcgttt      2820
     taacaagaat acattggttt ctcgagctag gacgaccttt tctcagaatc gacttttaga      2880
     tgtgttacag ataaataccg attcggttaa tggaactcat ggtaattccg tgaaaatggg      2940
     agagggactt actattagtg aaaaggataa atgtcaggct ttattatcga agtataaggc      3000
     ttgcttttca actggtttgc atgatttagg ctacacatct gtggctgaaa tggaaattca      3060
     tttaactgat acaacaccag tcgtatacag gccttatcga ctttcgcatt cggaacgtgc      3120
     ctatgttcaa ggtttggtgg aggaaatggt agaacatggt ataattcgtg aatctagctc      3180
     gccttatgcg agtccgattg tccttgttca aaagaaatcg ggtgagaagc ggttgtgcgt      3240
     ggattaccgt gcccttaatc gacgcacgaa aagagaccac tacccgcttc cgcgcataga      3300
     ggatttgctt gaccagcttt cagggcagtc acttttcacg acgcttgacc ttgcatccgg      3360
     ttaccatcag atcgccattg ctgaagcttc caaagagaaa acggcatttg tcacacccga      3420
     agggcaatac gaatacaatc gtatgccctt tggattggca aatgcacctg ctgtttttca      3480
     gcgggtaatc cataaaattc tcaataaaac taaggtgcca ttcgtcatca tatatatgga      3540
     tgacatttta attccatcga aaacattcga tgagggctta caacgcctcg aacaagtcct      3600
     tagcttattg ctggatgctg ggctgacact aaaaatggaa aaatgcaatt ttttccaaga      3660
     gaaaattgta tttttaggtt tcgagatcgg caaattcggt atcagacctg gagaacagaa      3720
     gacccaagct gtgtccaagt tccctgtgcc gcgcaaccaa agtgacgtta ggagatttct      3780
     tggcctggcc ggatttttcc gcaggtttgt caaggacttt gccctactgg cgagaccttt      3840
     gacaaacctg ctaagaaagg atactgcttg gcattgggcg gagtcacagc aaaacgcatt      3900
     tgatacctta aagaggttgc tagttgagag accaatctta gcactatatg accatagggc      3960
     cgaaacccaa ttacacacag atgcgagcaa gttcggcttg ggaggcattc tgatgcaaaa      4020
     gaacgggaat aattcgtggc aacccgtgtc ttattatagc cgtcaaacta gcgctgatga      4080
     acaaaaactc cactccttcg aactagagac gctcgcagtc ataaacgcgt taaataagtt      4140
     ccgcacctac ttattgggta taaaatttac catcgtgtct gactgtaatg cattacggtc      4200
     gacatttacc aaacgagatc tgatccctcg gatatcgcgg tggtggatcc aatttcttga      4260
     atacgactgc ascattgaat atcgtccagg tgagaaaatg actcatgttg atgctttaag      4320
     cagaggcgca atcgtagacc aacaagaaac aatacacgtg ctcgatattt taaatgttag      4380
     tgcagatgat tggatttcaa cagttcaatc cgccgatgaa gaagtaaggc gcatcaaaga      4440
     aatcgtacag gatcctgaaa ccgccaaaat tgctgctgtt cataaagagt atcaggtcaa      4500
     aaatggtcgc gtatataggg taatcgaagg cggaggatta agatggcttg tcccgagggg      4560
     tgtgcgctgg caggtgctca aaaccaacca tgatgacgta ggtcattttg gttttgagaa      4620
     gaccttgcaa aggatcaagt cgacattctg gttcccaaag atgcggaaat ttattcgaaa      4680
     gtatgtatca gcgtgcttgg agtgtgcaca ccataaggtc ccatctggcg ctaaagaggg      4740
     tatgttacat ccgattccaa aagtggatgt cccactacat accgtacacg cagatcatct      4800
     cggaccattt ccacgcagca agcacggtaa tatgtatatt ttagtgattg tggattcttt      4860
     cacaaaatat gtctatttat ctgcagtccg tagcacaaaa tcaaaggcaa gcattaaagt      4920
     ttttaaaaca tattttagtt tatttgggtg tccatcgcgg ctgattaccg ataggggtac      4980
     cagctttacc agcaagagat ttaaaacgtt tgttcagtct gttggggtga aacatatact      5040
     caattcagtc gcaactccac gtgctaacgg acaagtcgaa cgatataatc gcacgatttt      5100
     ggcttccttg ggaagtatga ctcacggaaa aagtagtgac atttgggaca cctttcttcc      5160
     cgatgtccaa ttaggcataa atacctcgat acatgacgtc acaaaaagat caccaactga      5220
     attgctgttt gggcgaaaat taggcaaccc atcgcaaggt attttgaata atgtctctga      5280
     agatatttta ataagtgaga ccaacgaatc catagagcaa attaggtcag acgctagtga      5340
     tcgcattaaa gaaaaccaaa acaaaaataa agatcgtttt gataagcatc gaaaatcacc      5400
     aaataaatat aaagagggtg acctagtcag ggtagtaaga tctattgttt caggctcagg      5460
     aaaatcgaag aaactagaat ccaaatgcca aggaccgtat cgaatcaaaa agatcttacc      5520
     taatgacagg tttattatag tagacacgcc gcttacacgg aagggaaaag catacgagaa      5580
     tgtggtagcg atagataaaa tttacccctg gatgagcttc gatgcaccgt catgttcttc      5640
     tagtgacgaa agtatctagt tataagtaat agatcattat tttwaaaata tcaatttgtg      5700
     aatacagatg gtttaattat agactttgtc atattatacc taaccttata actaagctat      5760
     actcaacaat gtttccacag acaagtatag ttttaaatca taatatttaa tttgttaacg      5820
     catagaatta caatattaat ttcattgttt ttatgttata cctcgcaaat atgtaacttt      5880
     agccgatgat ctacttgtat gacattattt tataagtcat taaataggta tktcaatgaa      5940
     actgattatc ttagtaagag aatttacgcg ttttgaaaag gataacttac cttaaatgag      6000
     agctttggca gattcgagcc tagcatgaga attattttat ctgttcagtg aaggtgtttc      6060
     atagcacaga gcttgattgg atgcgagctg gacatgagtg atatggccca gagggtctta      6120
     gcacagagtt caagcggaat cgagcctagc atgagaatta ttttatctat tcagtgaggg      6180
     tgtttcatat cacagagctt ggttaggtgc gagctggaca tgagtgatat ggcctagagg      6240
     gtcatggcac agagttcaag cagaatctaa ccacgtacaa gtgatatgat ataacacgca      6300
     gtcacagcaa attgatggtg aaagatgtga agtaacctca ttttgtttgg ctatatctaa      6360
     ttatataaaa gtagaattaa gtagatttgt tgctttcagt acaaaagtaa atttaaaaaa      6420
     aattgttcga aattgataaa taacattaaa aattacttaa atgatcagtt aaaattaatg      6480
     tttgttttaa aataaatgtg accttaaacg aagggacccg tttatgtgac ggatggccga      6540
     c                                                                      6541
//
ID   Gypsy-20_SpFr-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-331
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1843-1843 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 331 BP; 96 A; 63 C; 44 G; 126 T; 2 other;
     tgtaacagtc attaatttta tcacctatca tatttatatt cattactaat tcatcttatt        60
     atttttagtt taaacactaa tctatcaata gcaatatcct taaaacccga tgatagtatt       120
     tattataatt ttaaatcgac tcataaatcg attcagtttc cgaacgttgc aacactgtct       180
     cggcccgcca ttcgccattt tggtgggatt ttcgaattgt cttgwtgttg agagwctcgc       240
     cgatattttt gtgcagtaga ataaaataaa ctacctactt tgtgaaaatt tgtgtttaac       300
     tcaagaaccc catccttctg agcgtttttc a                                      331
//
ID   Gypsy-20_TrNi-I repbase;    DNA;    INV; 5902 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5902
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 223-223 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..5346
FT                 /product="Gypsy-20_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDLSKGRKDDHRRLTTPHREQSGVRRSRSRSRRSSGN
FT                 RSLREREQDLERQRQRLHRMEHVLQGERDAELRMSRTKQQLRMSHRSPRAN
FT                 SDHREQRGDSERRGWRREDSVRRELRRDDYERRQHDADYEPRQSDRRPSRH
FT                 QQRDQQGRDASVGRRSRSCSPSFSTRDIYKIIQSFKNDKSSQSFEQKAHLN
FT                 NKLDYKNILPEFDPSTKNQRMDVWLKKVNECASVYGWDERTTIHFSMQKLQ
FT                 GLAKTWYQSLTTILYSWTEWQDKLLKAFPCEQNYGQSLEDMLRRRSRFSEP
FT                 IENYFYEKLALLNQCEISGKRAVDCIIHGLTDRTAKSSALALRCSEPDQLL
FT                 QFLLSNKDNFNQNTARNKTSDHSSSADTNQQNRTNSTAGGNSSLFCYNCKE
FT                 KGHPYLKCPKPILKCNTCHKIGHKTESCQSKPENSTTKLNNVPKTMCISNS
FT                 NPSAKYIKRVLVNGVFLEAFVDLGSEVSLIRETSFGKLGVEHDGIPSMMKG
FT                 FGNGIVQSLGSVSLKLSIDDVDAVVVCKIVDDCLLEKPMLIGQTFSEQPHI
FT                 VVFKDATKLQFFNLATEIPSHCSIDDEVRLEQVSFVGHSTLYGITSVRAAM
FT                 ETKFRGNILLDTKIVGKPSEQYVVLGGVYQARDGILNAMIMPCSIPCSLRK
FT                 ASVFARAAKVNVVDFNGAVSSSDTPVAAEFHCVRKIEQCQIKCGDLASQQD
FT                 RTKLLELLQRYEHCFAFDLKDLGCTDVTEMQIELNSDRPVVYRPYRLSHHE
FT                 REQVRGMIDEMLDAGIIRESVSNYASPIILVRKRDGKTRMCVDYRMLNSVT
FT                 VKERYPLPIIEDEISRLSGQAWFITLDLMSGYYQVPIAEQHRHLTAFVTPD
FT                 GQYEFNRVPFGLANAPAVFQRMMNRVLGPARFDKATVYIDDLLIYGSNSDE
FT                 VLLRLEEVLQLLTDANLKLNLSKCSFLQNQIDYLGYEISSSGMRPGEAKIR
FT                 SVSNFPRPQNVHAVRQFIGLVSYFRKFIRGFAELAFPLTKLLKKDAKWEWE
FT                 VNQEEAFEALKDMLVNRPVLAIYDRHAETELHTDASRIGIGAILLQRSASA
FT                 EALRPVAYYSRQTTPEEKNFHSYELETLAVVCALRKFRVFLIGKEFKIVTD
FT                 CSALRSTFLKRDLVPRIARWWLSLQEFDCIVEYRAGVKMAHADALSRNPVD
FT                 DAVLQSTGQCPSILAITDEDWLLTLQLGDTELARIRDIVNSDLDAKGLEYV
FT                 KDNYIIRDNKLYKYLNGDKTNIRWVVPKGARWQICKMNHDDIGHVGYEKTL
FT                 DRMKSRYWFSKMSRFVKKYVGSCIECAYAKKTATTREGLLHPIIKVAIPFH
FT                 TVHIDHIGPFVKSKRGNTHILVVVDSFTKFVFIKAVRNTKTLSVIKVLEDI
FT                 FDTFRSPDRLVSDRGSCFTAHSFKRFCLDRGIKHILNAVASPRANGQVERY
FT                 NRTILDSLTAQNLKDGEKDWDNKLGKIQWGLNNTLQKTIGRSPAEVMFGLK
FT                 MNSENNPSLNEIIDLSQEHYDISDIREEVKNRIDQEQEKQKQYYDKGRKSA
FT                 RTYNKGDLVKITKTNFQNNGKSSKLLPTYEGPFRVVKILGHDRYKVAPIPG
FT                 FEGMRSKRKTTVASDRMQPWIHIVSLELDDDDNEMEIMDDKSDDETQNSS"
XX
SQ   Sequence 5902 BP; 1829 A; 1105 C; 1343 G; 1625 T; 0 other;
     tctcagaagt ggtatcaccg gcgtaaaact gcgtaagtat ccatagtcaa aaactgtaaa        60
     tagcaaataa atagtgtgat atatataaaa aaaatagatt tgttggaatt tgtttttata       120
     ttatcgagga tctacactaa tattataaag ctgaaaagtt ttttgttgtt tggttgatct       180
     aattaatttt aaacatagaa catgattgtc acctaattat atatatatga gtggtagaag       240
     gtcacaatga aataaattaa aattttccaa tgtattcata cctcacgggg cggtttatcc       300
     ggtataatta gcagtaaatt tatcaccttc tttcataata gtaaccaccc tagtcctaat       360
     attaaggatg gtatgtgtaa attgaaattt ctcaaacacc tttagcattt attagcacaa       420
     attataaata caacatggtg tggtaaatat aatgtacgaa aataaaaccg taaattgttg       480
     tgagttgcag aaaggatgga tctttccaag ggccgtaaag atgatcatcg gcgtctaaca       540
     acgcctcatc gtgagcagag cggtgtgagg cgctcacgca gccgtagccg tcgtagtagc       600
     ggaaatcgat cgctgaggga gcgagaacaa gatttggagc gacagcgaca gcgacttcat       660
     cgcatggaac acgtgcttca aggggagcgt gacgcagaac tacggatgag tcgtaccaag       720
     cagcagctgc ggatgtctca tcgcagtccg cgtgccaact ccgaccatcg tgaacagcgt       780
     ggtgactccg agcgacgcgg atggcggcgc gaagactccg tgcgtcgcga attgcgccgc       840
     gacgattacg agcgtcgtca gcacgatgcc gactacgagc cgcggcagag cgacaggagg       900
     ccttcgcgac accagcagcg ggatcaacaa ggccgcgacg ctagcgtggg gcgacgttca       960
     aggtcatgta gcccttcctt cagtactaga gatatttaca aaataattca gtcatttaaa      1020
     aatgataaat cgtcacagtc gtttgaacag aaagcacatt taaacaataa acttgactat      1080
     aaaaatattt taccggaatt tgatccttcc acaaaaaatc aaagaatgga cgtatggtta      1140
     aaaaaggtga atgaatgtgc ttctgtttac ggctgggacg aaagaactac aatccatttc      1200
     tccatgcaga aactgcaagg actggccaaa acttggtacc aaagtctaac tacaattctt      1260
     tattcatgga cagagtggca agataaacta ttgaaagctt tcccgtgcga acaaaattat      1320
     ggccagtcct tggaggacat gttgagacgg aggagtaggt ttagtgaacc aattgaaaat      1380
     tatttttatg agaaacttgc cctactcaat cagtgtgaaa tcagtggtaa acgtgccgtc      1440
     gactgtatca tccatggtct cacagatagg acggccaaat ctagtgcctt agctttgcga      1500
     tgctcagaac ctgaccaact tctacagttt ttactaagca ataaggacaa cttcaatcaa      1560
     aatactgcta gaaacaaaac ctctgaccac tctagttcag ctgacactaa tcaacaaaat      1620
     agaactaaca gtacggcagg cggtaatagt tcgttgtttt gttacaattg taaggagaaa      1680
     gggcaccctt acctgaagtg ccccaagcca atactcaaat gtaatacctg tcacaaaata      1740
     ggacacaaaa ctgaaagttg tcaatcaaaa cccgaaaatt caactacaaa actaaataat      1800
     gtaccgaaaa caatgtgcat atcaaattcg aatcctagtg ccaagtacat aaaacgcgta      1860
     ctagtcaatg gcgtttttct ggaagcgttc gtagatttag gcagtgaggt ttctttaatc      1920
     agagaaacta gttttggcaa attaggagtc gaacatgacg gaataccatc aatgatgaaa      1980
     ggtttcggaa atggaattgt tcagtcctta ggttcagtgt cacttaagtt atcgatcgat      2040
     gacgtagatg ctgttgtggt gtgtaagatt gtggacgact gcttactcga aaaaccgatg      2100
     ctcattggcc aaacgttttc ggagcagcct catattgtgg tatttaagga tgcgactaag      2160
     ttgcagttct ttaaccttgc caccgaaata ccatctcatt gttccattga tgatgaagtt      2220
     cgtctagaac aggttagttt tgtagggcat agtacattgt atggtatcac aagtgtacgg      2280
     gctgcaatgg agactaaatt tcgtggcaac atattattgg atacgaaaat tgtagggaaa      2340
     ccaagcgaac agtatgtcgt actaggtggt gtctatcagg ctagagacgg tattttgaac      2400
     gctatgatta tgccctgttc tatcccttgt tcgctgcgga aagcttctgt atttgctcga      2460
     gctgctaagg taaatgttgt agattttaat ggggcagtgt cttcatcaga tactcccgtc      2520
     gccgcggaat ttcattgcgt tagaaaaatt gaacaatgtc aaataaaatg tggggattta      2580
     gcgtctcagc aagatcgaac caaactttta gagttacttc agcgatatga acattgtttt      2640
     gctttcgacc ttaaggactt agggtgtact gatgtcacag aaatgcagat cgaacttaat      2700
     agcgatcgtc ccgtggtata caggccttac cggctctcac atcacgaacg tgagcaggtc      2760
     cgcggtatga tagacgagat gttagatgcg ggaatcatta gagaatctgt atcgaattat      2820
     gccagcccca ttatccttgt tcgcaagaga gacggcaaga ctcgtatgtg tgttgactat      2880
     aggatgctca actcggtgac tgtcaaggaa cggtatccat taccaatcat tgaagatgag      2940
     atttctcgtt tatctggtca agcgtggttc attacgttag atttaatgtc aggctattac      3000
     caagttccca ttgccgaaca gcacagacac ctcacagcgt ttgtcacgcc agacggacaa      3060
     tacgagttta atcgtgtacc gtttggtttg gccaacgcgc cggccgtctt ccagagaatg      3120
     atgaaccgcg tattgggtcc agcgagattt gacaaagcta ccgtttatat tgatgattta      3180
     ctaatttatg ggagcaattc tgatgaagtt ctattaagac ttgaagaagt gttacagctc      3240
     ttaactgatg ccaatctcaa gttgaatttg tccaagtgta gttttctgca aaatcaaata      3300
     gactacttag gttacgaaat tagctcctca ggaatgcgac cgggtgaggc caaaattcga      3360
     tctgtatcca actttcccag gcctcaaaac gttcatgcag tacgtcagtt cataggtctg      3420
     gttagctatt ttagaaaatt cattcgagga tttgctgagt tggcttttcc ccttaccaag      3480
     ctactgaaaa aggacgctaa gtgggagtgg gaggtcaatc aagaagaggc tttcgaggca      3540
     cttaaggata tgttagttaa cagaccggtc cttgctattt acgatcgtca tgcggagact      3600
     gagctgcaca cggacgccag taggattgga atcggggcaa tcttattaca gcgttcagct      3660
     agtgcagaag cgttgagacc agttgcttac tacagtcgac agacaactcc ggaggaaaag      3720
     aacttccact cgtatgagct tgaaacgctt gccgtagttt gtgctctgag gaagtttcga      3780
     gtcttcttga taggtaaaga gttcaagatt gtcactgact gtagtgctct acgttccaca      3840
     tttctcaaac gtgaccttgt accccggata gctcgatggt ggctatctct acaagaattc      3900
     gattgtatcg tagagtatcg agctggtgta aaaatggcac atgcggatgc gttgtcaaga      3960
     aacccagtag atgatgctgt tttacaaagt actggtcagt gtccttccat attagcaatc      4020
     actgatgagg actggcttct tactttacag ctaggtgaca cagagttggc taggatacgt      4080
     gacattgtta atagtgacct agatgcgaag ggactcgagt atgttaagga caattatatc      4140
     atccgggaca ataagctcta caaatacttg aacggggata aaacgaatat taggtgggta      4200
     gtaccaaagg gtgcgaggtg gcagatttgc aagatgaacc acgatgacat agggcatgtt      4260
     ggttatgaaa agaccttaga ccgtatgaaa agtcgatatt ggttctctaa aatgtcgcgg      4320
     ttcgtaaaaa aatacgtagg atcttgtatt gaatgtgcgt atgcgaagaa aaccgcaacc      4380
     actcgcgagg ggttattaca ccccatcatc aaagttgcaa tcccttttca taccgtgcat      4440
     attgatcata tcggaccatt cgtaaagtcc aaaaggggca acactcatat attagtggtc      4500
     gttgactctt ttactaaatt tgtattcata aaagcagtcc gaaataccaa aaccttgagt      4560
     gtgatcaaag ttcttgaaga catattcgat accttcaggt cccctgatag gttagtaagt      4620
     gatcgtggaa gttgttttac cgcgcactct ttcaaaagat tctgtttaga caggggtatc      4680
     aaacatattt taaacgcggt ggcgagccct agagctaacg gacaggttga aaggtacaat      4740
     cgcactatat tagactccct aaccgcacaa aatctgaaag acggtgagaa agactgggac      4800
     aataagttag gaaagataca atggggctta aacaatacat tacaaaaaac aataggtagg      4860
     tctccagctg aggtgatgtt cgggttgaaa atgaacagtg agaataatcc ttcactcaac      4920
     gaaataatag atttaagtca ggaacattac gatatatccg acattcgaga ggaagtcaaa      4980
     aatagaatcg accaagaaca agagaaacaa aagcaatatt atgacaaagg ccgaaaatcg      5040
     gcacgtacct ataataaagg tgatttagta aaaataacca aaaccaattt tcaaaataat      5100
     ggcaagagtt cgaagctttt acctacatat gagggcccat tcagagttgt gaaaattcta      5160
     ggacacgatc gctataaagt tgcccctatt cctggatttg aggggatgag aagtaaacgt      5220
     aagactacgg tagcctcaga taggatgcag ccatggatac acattgtttc gttagagctt      5280
     gatgatgacg acaacgagat ggagattatg gatgacaaaa gtgatgatga aacgcagaac      5340
     tcttcttaga tttatcacag atagacttca attgtttaag attttgctat tgattttgct      5400
     acaaaatgat aatgaattgt ttcaggtcaa gtgcgagaat ggatgggttc gcaacttgat      5460
     tccgatacga tgttgaattg attcatgggt gatcagaagc gagaatggat gggttcgcta      5520
     cctgatgcct gtggtcaatt tatgattttg attggttcat taaaggtact aagatttaat      5580
     taagatatta taccctcgag aatggatggg ttcgaggtta ttttacaatg catggatcta      5640
     ttttaaatat tgattgctta gatatgtact cgtttgttat tttattgttt agctgccaag      5700
     taatacctga ttctatacta agtgcaacgt atgttatgtt tagagtgtaa ttcacaaaaa      5760
     aaaagctaaa tcctctatat taggttagta ttgataggaa aatactgtct ttaaattttc      5820
     catacgaatg agacaaccgg ccgtgtgtaa ggttttcaac ggtggcgtgc atggggccat      5880
     acacgtcatc aggatggtcg ag                                               5902
//
ID   Gypsy-20_TrNi-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-399
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 177-177 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 399 BP; 129 A; 31 C; 77 G; 162 T; 0 other;
     tgtaaggttt tatttatttt taatacgaat tataaagatt gaaagttgtt aatttgacta        60
     ctgtaaggtt ttatttattt ttaatacgaa ttataaagat tgaaagatgt taatttgact       120
     actgtaaggt tttatttatt tttaatacga attataaaga ttgaaagatg ttaatttgac       180
     tactttccga tgacggaacg tttttttgtt ggctgttggc gggtcaacta atttttgggc       240
     gggattgata ttatttttga atagtgcgga gagttattaa aaagtactgt tgattaatat       300
     cacctaggtg ttataacttg tgtaaaacaa tatcgattgg aaaaataaac agtgtaattt       360
     aagtacagtg tggagtttga ttcgatataa cctgttata                              399
//
ID   Gypsy-20_TrVa-I repbase;    DNA;    INV; 6519 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6519
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 265-265 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           619..1635
FT                 /product="Gypsy-20_TrVa-I_1p"
FT                 /translation="MVDTRKKNADNNSVTSNSSNTEISATSQEMETVSFNL
FT                 LFKFIKSFDGNREQLSPFITNCNRAFSIALDSQKPILLDYVQSQLTGKAEA
FT                 ACVNRTFDTWESLSNYLKLMYADKKHQSHLLIDLINCKQQPSEIITDYVQR
FT                 IETCLKRILASIQSNCQKSSELEGRLAAMHDLALQIFVLYVTPSISTILRA
FT                 RSVETLNDAINIALEEERVQSLIKSQPRSLPNKYCKVCNTKTHNTSDCFKL
FT                 KKNSNSNSNVHSFQNSNHNNQSNKSNDQSVNNNQFNAKFCKYCKNKGHLID
FT                 ECFKRQKRNAQAQYSNSETSKNVKQVSQQLATTQETSQSTIVAKQIM"
FT   CDS           1521..5480
FT                 /product="Gypsy-20_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="CTSSIFKFRDFKKREASLPAVGHNSGDFSKHNSGKTN
FT                 HVDTYVFSINDNARLTKFTCFETSNRDISLLIDTGANISLIKMQSLKSNIP
FT                 LYTDELFNLNGIGNQNKVTTIGYRDLTLTLENNVKIKHRFHVVDGNQTNIR
FT                 SNGILGNDFLISHKATLDYENNSLNFKGNRLPLLSYIDEPILVIKPRTETI
FT                 IEVNINNPEIGEGILPEMEICKGLYLAKAIVKVNENNKAITTFLNSTENSY
FT                 ELKQVNLTLQPLPKNARILQASCDNNDNFSPARKKKILDLVPDEHLNSEEK
FT                 ESIQNLISEYLDIFHLDGENLTCTDAIEHEINLKNDHPIAAKTYRYPEVHK
FT                 NEVHNQINKMLKQGIIRPSKSPWSAPLWVVPKKLDKSGKIKWRVVVDYRKL
FT                 NSVTIGDAYALPNISEILDRVGNAQYFSVLDLSSGYHQVKVREQDKSKTAF
FT                 TAPYGGDSIDDSAVGISMQHFEFNRLAFGLRNGCPTFQRLMNVVLTGLQGL
FT                 HCYCYLDDIVVFGSSLQEHNERLKKVFDRLRLNNLKLQPEKCAFLRREVDY
FT                 LGHLLTQDGVKPNPEKIEIIKDFPIPKCPKDIKSFLGLVNYYNKFIKNLSA
FT                 KAKPLTILLKKNALFNWTEEQQIAFDQLRAELISEPILQYPDWNKEFIITT
FT                 DASNYALGSIISQGPIGQDLPICYASRTLQKSEVNFSATEKEALAVVWAVK
FT                 RFRPYVYGRHFKILSDCRALQWLFNVKDPGSRLVRWRLKLEEYDYEIIHRS
FT                 GNQIKHVDALSRIHASSDHSQSSSSSTPCSSSSTLTSSSSMPNEARDVNVG
FT                 QINKNLESYSDFLDNRLRCSNLQVYDFNEVDSYLLDSQDAIAYFTASDLNE
FT                 ENKFSEEILSKSVNIDNFKNENFEIRSVKKTVAKNNQIFYHCFVKHFYYER
FT                 ASYPDAFHTLQNLKLMLEKDKIKAISFPNFYNDFDQFNYKKIKEIIMYIFR
FT                 NSKIRITIHHSKILVPKSEEIPIILKECHDNPISGHGGYHRTLNRVKSKYK
FT                 WKNMHDDIKKYLKNCQSCQLNKTSRINFKAPMEITTTSSKAFEKLALDIVG
FT                 PLPLTESGNKYILTMQDDLTKFSYAIPIPDHTSEVIAEQLSKFITMFGIPE
FT                 HILTDQGKEFNSELLKELTKLFKIKHVTSTAYHPQTNGALERSHSTLKDYL
FT                 KHYINSDQSDWDSYIPLAMFSYNTAVHSTTKFSPYELVFGHKPTIPSSITQ
FT                 EPQFKYTYNNYVDNLKVKLNKSFEIARNNIIESKNKSKTNYDKNVNKPEYK
FT                 IDDYVYLKNESTKPFLSKKLSQKFKGPYKIIQIHDNQNVTIKVGNKQVRVH
FT                 INRLKPAN"
XX
SQ   Sequence 6519 BP; 2257 A; 1240 C; 949 G; 2073 T; 0 other;
     aaaactggtg tcagaagtcg gatctgtgta aacatcgttc caaaaaaaaa atcttttagt        60
     gccgcgatca attgaactct cgcagtttca agtgtcaact ttaccgcgat tttcgggttc       120
     aaccgctacg cacgattttt tcgatggtgt ctcgcgttgt aagctcctca tagcacgtga       180
     actttattac acggacgaac gaaaattaaa atctgttata cctacgtgtt ggtgaaagtg       240
     tcaagtgata attccgatcc aaatgggatt atatgttgaa atccaatcca agtgataaaa       300
     ctacaaggta gacgtgacaa caatccgtta tccttctttt cctattttct ctttccattt       360
     taccttattg aatgacatga atttttcaga atttctattt ttgagtaata cttttacaga       420
     aaagtcaaat gtttaatttt gatttgagat ttttttattt ttttcatttt atcgagttta       480
     cgagactgta atcgcgagga gtcactcgat aaatctgttc tgttataatt attatttttt       540
     tttttttttt cattttgttt cttccattct ttgtttcttt ttctttattc accttcctgc       600
     caaattaata aataaatcat ggtggatact cgtaagaaaa acgccgacaa caatagcgtc       660
     acatcaaatt catcaaatac agaaatcagt gcaactagtc aggaaatgga aactgtttct       720
     tttaatctgt tgttcaaatt cattaaatct ttcgatggca atcgagagca attgagcccg       780
     tttattacaa attgtaatcg agcgttctca atcgctctag atagtcaaaa accgattctt       840
     ttagattacg ttcaatcaca gcttactgga aaagcagaag ctgcatgcgt aaatcgaact       900
     ttcgatacat gggaaagttt atccaattat ttaaaattaa tgtatgccga caaaaaacat       960
     caatcgcatt tactcatcga tctaataaat tgcaaacagc aaccatccga aataatcaca      1020
     gattatgttc agagaataga aacatgttta aaaagaattc ttgcttcaat tcaatcaaac      1080
     tgtcaaaaat catctgaatt agagggaaga ctggccgcaa tgcatgacct agcattacaa      1140
     attttcgtgt tgtatgttac gccgtccatt tcgaccattc ttcgcgctcg ctcagtagaa      1200
     actttaaatg atgcaattaa tatagcttta gaggaagaac gcgtgcaatc acttatcaaa      1260
     tctcagccgc gatctttacc taataagtat tgtaaagttt gcaacacaaa aacacacaat      1320
     acttccgatt gtttcaaact caagaaaaat tcaaattcca attctaatgt ccattctttt      1380
     caaaattcca atcataataa ccaatccaat aaaagtaatg atcaaagtgt aaataataat      1440
     caatttaatg ctaaattttg taagtactgt aaaaataaag gtcatttaat tgatgaatgt      1500
     tttaaacgac aaaaacgtaa tgcacaagct caatattcaa attcagagac ttcaaaaaac      1560
     gtgaagcaag tctcccagca gttggccaca actcaggaga cttctcaaag cacaatagtg      1620
     gcaaaacaaa tcatgtagat acgtatgttt tctcaattaa tgataatgcc cgtctcacca      1680
     aatttacctg ctttgaaaca tcaaaccgag acatttcttt attaatcgat acaggcgcaa      1740
     atatcagttt aattaaaatg caatctttaa aatcaaatat tcctctttat actgacgaac      1800
     ttttcaattt aaatggtatt ggtaatcaaa ataaagtcac aactataggt tatcgagatt      1860
     taactctcac tttagaaaat aatgttaaaa taaaacatag atttcatgtt gtcgatggca      1920
     accaaactaa tattcgatca aacggtattc ttggtaatga tttcctcatt agtcataaag      1980
     ctacgcttga ctacgaaaat aactctctca attttaaagg taatcgttta cctcttcttt      2040
     catatatcga tgaaccaatt ttagtcataa aacctaggac cgaaaccatt atagaagtaa      2100
     atattaataa tcctgagata ggagaaggta ttcttcctga aatggaaata tgtaaaggac      2160
     tttatctcgc aaaagcaatc gtcaaagtta atgaaaataa taaagcaatc acaacatttt      2220
     taaattcaac tgaaaattca tacgaactca agcaagtcaa tttaaccttg caaccacttc      2280
     caaaaaatgc tcgtattctt caagcttctt gtgataataa tgacaatttc agtccagcca      2340
     gaaaaaagaa aattttggat ctcgttccag acgaacattt aaattccgaa gaaaaagaat      2400
     ccattcaaaa tttgatctcc gaatacttag atatttttca tttagatggt gaaaatctca      2460
     cctgtactga tgcaattgag catgaaatta accttaaaaa tgatcatccg atagctgcta      2520
     aaacgtatag atatccggaa gttcataaaa atgaggttca caatcaaata aataaaatgt      2580
     taaagcaagg cattattagg ccctcaaaat ctccctggtc cgctccattg tgggtggtcc      2640
     caaaaaaatt agataaatca ggtaaaatta aatggagagt agtcgttgac taccgtaagc      2700
     taaattcagt tactattgga gacgcttacg cgttgccaaa tatctctgaa attttggaca      2760
     gagttggaaa tgcccaatat ttcagtgtcc ttgacctcag ttctggttat catcaggtca      2820
     aagttcggga acaagacaaa tctaaaactg cattcacggc tccttatgga ggtgacagta      2880
     ttgatgatag cgctgtggga atttctatgc aacattttga attcaatcga ctcgctttcg      2940
     gtttacgaaa cggttgcccc acttttcagc gtctaatgaa tgtcgtgtta accggcctgc      3000
     aaggacttca ttgttactgt tatttagacg acatcgttgt gtttggatcc tctttacagg      3060
     aacacaacga aagattaaaa aaggtatttg ataggctccg actaaataat ttaaagcttc      3120
     aaccagaaaa gtgcgctttc cttcggcgag aagtagatta tttaggtcat ttactcacac      3180
     aagatggtgt caagcctaac cctgaaaaaa ttgaaataat taaggatttt cctattccaa      3240
     aatgtcctaa agatattaaa tctttcttag gtctcgttaa ttattacaat aaattcataa      3300
     aaaatctgtc agctaaagct aaaccgctga caatcctttt gaagaaaaat gctttattta      3360
     attggaccga agagcaacaa atcgctttcg accaattacg cgctgaactc atatcggaac      3420
     caattcttca gtatcctgat tggaacaaag aattcatcat tacgaccgac gcatctaatt      3480
     atgcattagg tagtatcata agtcaaggcc ccattggtca agacctcccg atctgctacg      3540
     caagtaggac acttcaaaaa agtgaagtca atttcagtgc cacagagaaa gaagcgctag      3600
     ctgtagtttg ggcagtcaaa cgttttaggc cctatgtcta cggtcgtcac ttcaaaattt      3660
     tatctgactg tcgcgccctc cagtggcttt tcaacgtgaa agaccctggg tcacgcttag      3720
     ttagatggcg gttaaaatta gaggagtacg actatgagat aattcacagg tctggaaacc      3780
     aaataaagca tgtcgatgca ttgtcccgaa tacacgcttc ctctgatcat tctcaatctt      3840
     cttcttcttc aaccccttgt tcttcatcgt caacccttac ttcttcttct tccatgccaa      3900
     acgaggctcg tgatgtgaat gtaggtcaaa taaacaagaa tctcgaatct tactcagatt      3960
     ttctagataa tcgtctccgt tgtagtaatc tacaagtata tgattttaat gaagtcgatt      4020
     cttatctatt agattctcaa gatgcaatag catattttac tgcatccgat ttaaacgaag      4080
     agaataaatt ctctgaggaa attctctcga aatctgtaaa tattgataat tttaaaaacg      4140
     aaaattttga aatcaggtct gttaaaaaga ccgtcgctaa aaataatcaa atattttatc      4200
     attgttttgt taaacatttt tattatgaaa gagcaagcta cccagatgca tttcataccc      4260
     ttcaaaattt gaaactaatg ttagaaaagg ataaaataaa agccatttct ttccccaatt      4320
     tttataacga tttcgatcaa tttaattata agaaaatcaa ggaaataata atgtatatat      4380
     ttaggaattc taagattaga attacgattc atcatagtaa aattttagtt cctaagtcgg      4440
     aagaaattcc aatcatctta aaagaatgtc atgataatcc aatcagtggt cacggtggat      4500
     atcacagaac tcttaatcga gtaaaatcca agtataaatg gaaaaatatg cacgatgata      4560
     ttaaaaagta tctaaaaaat tgtcaatcat gccaactcaa caaaacatct cgaattaatt      4620
     ttaaagctcc aatggagatc acaactactt cgtcaaaagc tttcgaaaaa ttagctctag      4680
     acatcgtagg tcctctgcct ctcactgaat caggcaataa gtatatttta actatgcaag      4740
     atgatttaac caaattttct tacgcaattc ctatacctga tcatacgtca gaagtaattg      4800
     cggaacagtt atcaaaattt atcacaatgt tcggaatacc agagcatatt ttaactgacc      4860
     aaggcaaaga atttaattca gaacttttga aagagttaac caaattgttt aaaattaagc      4920
     atgtaacttc aacagcatat catccacaaa ctaatggtgc cctagaaagg agccattcaa      4980
     ctctcaaaga ttatttaaag cattatatca attccgatca atccgattgg gactcatata      5040
     ttcctcttgc tatgttttct tataatactg cagttcattc aacaacgaaa ttttctccgt      5100
     atgaacttgt tttcggtcat aaaccgacca ttcctagctc aataacgcag gaacctcaat      5160
     ttaaatacac ttataataac tatgtagata atttgaaagt aaaattaaat aaatcttttg      5220
     aaatagctcg taataatatt atagaatcaa aaaataaatc gaaaacgaac tatgataaaa      5280
     atgtaaataa acctgaatat aaaatcgacg actacgtcta tctgaaaaat gaaagtacaa      5340
     aaccattttt gtccaaaaag ctctctcaaa aattcaaagg tccatacaag atcattcaaa      5400
     ttcatgacaa tcaaaatgtc acgatcaaag taggaaacaa acaagtcaga gttcacatta      5460
     atcgattaaa accagctaat taatccattg ctaattttaa ttaatctatt cagtaattat      5520
     cgtcaatttc gattgaaatt aaagctccaa ttctacaagt tgcttctctc tgagcatatc      5580
     tccgaaatta tttgtaaata tttcattgat attctttact tagatcgaaa ctttttagtg      5640
     aattttatcg acgattaatc gaaaacgttt ctgtaaatat tatgttttca ttctctattt      5700
     agcgtgtgta atctttgaaa attattcaaa atttcaaaat caaaattgac tgactatttt      5760
     gtcaactttt cctctgaatt tctcaaaatg gtaatctttg ctaaatttca taatcattca      5820
     attcctttgt ctcttccttt ttcctccttg ttgtcaacgt ttttcaaaat tcacgaatct      5880
     caccaaaaaa cgattcgaaa catcgctgaa catcgcaact cagttcagaa aatccatgcg      5940
     ttagaagtca atctctgttt ccggtcaact cacgaagcta tcttctaaat tatgtcgtga      6000
     agacctctac attgttcaaa atccaccctc atctcaaata cgcaacgaac aaacacactt      6060
     ggtggccgat tttatgatgc acccaaactc cgcatccgat atttaaaaga aacatctctc      6120
     acggtcaacg caatcctctg aacacgtgcg gcaacaaccc gcaacaccct tgcaacgcaa      6180
     aggttctcta ctcaaggaca gttcatcctc taaacaaaag agacattatt attctgcttc      6240
     ttcgttcacc caattcatcg cattctacca tttcattcct attcttttta tatttttttt      6300
     tccttcacaa aaaaggaact ctctcttttc aacagtttaa acgcaatagc gtctttttaa      6360
     attaaatcat tttatttttg ttttcagtaa tcaatcaaga atcaagttta aatttctttt      6420
     acaaatattt atttcataga gctgatcaaa cttttcaatt gctatttgtt ttaacctcaa      6480
     tattgctcaa aatcaatatt tcgatcttaa ggggggagg                             6519
//
ID   Gypsy-20_TrVa-LTR repbase;    DNA;    INV; 368 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-20_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-368
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 324-324 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 368 BP; 97 A; 86 C; 48 G; 137 T; 0 other;
     tgttatgcat cgatccctgg tctctcttgt ccactgcagg atgcagctgg atattcagtt        60
     aacatgtgtt aaaacttaaa acaaaagaga tgctccaaag aagggactct ccctcttcgt       120
     ctttttcgga caaatcactc catcgccagc tctcgctctt aaagcattta aaatcaaatc       180
     cctcgtactc atttatttcc atcccgtatt ttgttttctg ttattctgat cgttattctg       240
     ttttttatct gttattaatt ctttcaatat atatatccat ctaaactcga tattcgatct       300
     tcatcattta tttctattac actttcatac atatagtgta acagcgtacc caaacgggtt       360
     ccgtaaca                                                                368
//
ID   Gypsy-21-I_NVi repbase;    DNA;    INV; 7799 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-21-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7799
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 779-779 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1023..2654
FT                 /product="Gypsy-21-I_NVi_1p"
FT                 /translation="MLNGMEDDVGNWVLNLTRGELRQTLSSLRLRQDGNAE
FT                 DQWVRLHKWLMGEYDPSDFEPTGELGAAAVKQERAESRRSFLETTCTEEKR
FT                 IGINPHPLEELISDPGTQGRLQRTLDNAVEENVIVPENVHEEAGADKDEFK
FT                 DCIAGVDGQEYTMPPGMVDYLEKMQRTVRSLQEEVSQLKQKRTEARASSTR
FT                 TDGESRQPPPRVTFSDATNFETSTPATGARGATPRNRWREWREAAERHSPA
FT                 PNRGTTRTFVRDIVTIVRKWDLRFSGSMTDRIDRFLDRLESNMRLAQMTEA
FT                 EKMESLPHVFTGVAAEWYENNKDNWRCWEEFRTAATRWYGTNRRFQQRLAS
FT                 DAEKRYQGAHEPVRDYVTCLGGMMKEMRPRPCLEKQLDLLHKNLKPELQRL
FT                 TPRMDCYDWDSFREKAEEAETVLASSQEYRAPPPPEQTMLASLAYVSPTKR
FT                 KPATAPPKVAAVEVAQANDGNTQLAEMFSKMLDERLAKFEKKIRSESERSN
FT                 KYEQKRHSTHHNKHQGNKPKSEALCYNCNKPGHFKRDCPEGKEEASA*"
FT   CDS           6680..7648
FT                 /product="Gypsy-21-I_NVi_3p"
FT                 /translation="MEPAEKSFEEEARRETGAARMLRLAAATGIRWPAVHS
FT                 EVVLQAFSELVTLSEVASRAREEAEQVADEWAEKEAEGRAAERAADXAEDD
FT                 LDETAATVIEKSGRPTEDSPADNKPASEGAGAWGVTPEPSTPGASSLGDEE
FT                 RADSWVELRKELCILRDTIQESEDWEVXLFTRFDAYLQAAGSQADPEAQVW
FT                 ARRIEDRREEQVLLDGARRRRQDRRRALEAEERLDRLREKRERLEEKARLE
FT                 KQAARVRAMRKKWPARRSSSARSTSGRRGQRNRAVTCAAIRECGDPTSARS
FT                 GSATRRYWRRHHETTRRSRGDVEDGWSWRE*"
FT   CDS           join(2615..5176,4981..6528)
FT                 /product="Gypsy-21-I_NVi_2p"
FT                 /translation="ARLSGGKRGSERVRTVDTRSRNSKKTENKAVSRSASP
FT                 RVTRAEKRSVSAAQASRAEKRSARLGEACAGEPRTASESSPEKQERHGAII
FT                 TPSPKNKNKARKAGESMQEPAALSSLSAETADEGDEAGQCTQEHREPGRSE
FT                 RDADDVIDSILESQAGEEXNLPGDEDNPQEKRWWMEARVGSFRFRALYDNG
FT                 ASRVCMGPIGLQLASALGRQLMPSHGRGAKLADGSYTKIVGYVWLPFRVGN
FT                 VEKEVRVAIIPDLPTDCIVGVNFMLTFKAVLDPTTSKLHFKESKEYVNVEL
FT                 AAMEGGALTLASMGLADVEEQQREALRALLDKIIGPETGEIGCTTWIEHHI
FT                 EVQTTRPIKQKYFPVSRKIEEEMHEQVKAMLAAGIIEPSNSAFASPVVMVR
FT                 KANGKYRFCVDFRKVNAITRNDAYPLPQMNAILRKLQQARYISTIDLSSAY
FT                 HQIPLSEESKQYTAFTVPGMGLFQFKRLPFGLSEAGATFQRLMDKIITPEL
FT                 QPHAFSYLDDVIVATETFEDHVKVLERVLKRIKEAGLTVNREKSVFCKEEV
FT                 KYLGVLVNRDGFRPDPEKIAPIVNFPQPKNLKQLRRFHGMASWYRQFLEGY
FT                 AALAEPLTRLTRKDQPFVWGEDQQSAFEAIKALVASAPVLHCPDFDQQFVI
FT                 QTDASDTGLGVVLTQNINGQERVLEFASRVLTPAERNYTVSERECLAVLFA
FT                 VRKFRQYIEGYEFKVITDHSSLRWLCNLRNPTGRLARWALELQGHKYTIEH
FT                 RKGADHHVPDALSRMYEETEPEIATVSQDPQPQDCWYNGRFKLWGGGGGCT
FT                 STGRILTSRAPWETTTMPGSSSSQRKNDCKCCKNVMISRRLDISAAKKHTR
FT                 EWPVQIVGGGGRMYKYRPDPDITGAMGDDDDAWKLVVPAEKRLQVLQECHD
FT                 QPTAGHFGREKTYKRVTEKYFWPRVYRDVARYVQRCRLCQLGKVEQRAPQG
FT                 LMGKRVVRKPWQWVAGDIMGPLPKSAKGHEYALVFQDLFTRWIECIPLRKA
FT                 NGKSILTALKERVILRFGAPEIFHSDNGTEFRNKTINEYLAAQGIHHSYSP
FT                 PYHPQANPVERVNRTIKREIAAFAEENHRAWDEHLSEIAFSFNTAVHEATG
FT                 ASPAMLNFGRQPAMPASLRVKEDQEAARQGAVGDWQARLAKLPALHERAKA
FT                 LSGEAQDRHASYFDARRRAATFKVGDIVAKRRHVLSSAAGGIAAKLALPYV
FT                 GPYTITAQVGSNTFELTGKDGKIEKLVPAEEMKIFYDTAEDEAGDEVDDEA
FT                 DDNPTRPPRDDSEAEATRDPPAACGDEPELEPSDVGTGVEDKREKRTRKRV
FT                 TAPAGACGGRAXKDSVGAAGEPPRRPRGRPRKIVTASEPPEEQRIVKRKPG
FT                 PTEGLD*"
XX
SQ   Sequence 7799 BP; 2171 A; 1939 C; 2390 G; 1293 T; 6 other;
     aactggcgcc tcaacgtgta gaggtcagag gggcgcgaag cacgcataag cgtacgtaaa        60
     gacgaggaaa gtcaggtacg cggataaaca ttcggataga tattcggtcg agccgaattc       120
     gtcgcggcgc gtagcaacag cgtacacgac gcgcagcgag cagcggcgag aggacggcga       180
     gcgagcgagc ggcgccgacg taaatagcgt ttgtttacat cgcgcgcggg ctagcgcagt       240
     arcggcgcga gccataatct gtgctgtgtg agcgcgatcg cataggactc ggaggggggg       300
     cttctctcgg tgtttcgcga caagttgagg tgggcctagt ggcaggccta cgcgacgaga       360
     cgtcgcaatt aattctttta tttttcacga attttccggg ttgaataacc ggaccgaaag       420
     caccgagggg ctcgatactc gagtcgagct tgccgcgccg gcataaacag ggcttcagag       480
     aggcgcgcaa cggttcgaag ttgcgcgcac caaaagtaaa tacgcctgct ataaacaggc       540
     gacggctcgc cgtgcgggac ggcgagcagg ttagaaattt aaattttggc cgccgagcgc       600
     ggggggcgat cgtactcaca cacaaagcgg ggagtcgaga gcgtgtgtta gttaggcatt       660
     ttcgcgttta cagcatagga aaaattgtaa gaattcctgt aaaatagcaa caggagtggc       720
     agtgtcaccg gtcggattat cgagtggctc gacacggggt cgacgaccac atcaattaat       780
     tttttttctt tggttatgaa tttagcgagc gacaaggtaa gcgggatttg tgtcatcttt       840
     ttgttttctt tttttctcac cgcctgctac ttgtcgcacc gactggggac acacaacggc       900
     gtaagcgagc gtaacgcaca gttaggaatt gcgaaacaca tgcacacgcg cgctcgactc       960
     tagcgagcaa tacttgttgc taaagcgtgc gcagagtaaa aaaatcagaa gaaacccaga      1020
     taatgttgaa cggcatggaa gacgacgttg gaaactgggt actgaacctc accaggggtg      1080
     agctgcggca aacattgtcg agcctacgac taaggcagga cggcaatgca gaagaccagt      1140
     gggtgcgact gcacaagtgg ctgatgggcg aatatgaccc gtcggacttc gagccgacgg      1200
     gcgaactagg agccgcggca gtgaaacaag agcgagcgga gagccgcaga tcattcttgg      1260
     agaccacttg tacagaagag aaaagaatcg gcattaatcc gcacccactg gaagagctga      1320
     tttcggaccc aggaacccaa ggacgactac agagaacgtt agacaacgcc gtcgaagaga      1380
     acgtcatcgt accagaaaat gtacacgaag aagccggagc ggataaggac gagtttaaag      1440
     actgcatcgc gggggtggac ggacaagagt acacgatgcc accaggcatg gtagattacc      1500
     tggaaaaaat gcagcgaaca gttagaagtc tgcaagagga ggtgagccag ctcaagcaaa      1560
     agcgcacgga agcgcgtgct tccagcacca ggacggacgg cgagtcgaga caaccgccgc      1620
     caagagtcac gttcagcgac gcgacaaatt ttgagacgtc aaccccggca acaggcgcga      1680
     gaggcgcaac tcccagaaac aggtggagag aatggcgcga agcggcagaa agacactcgc      1740
     ccgcaccaaa ccgaggcacg acgagaacgt tcgtgagaga tatcgtgact atagtccgca      1800
     agtgggactt gcgattttct ggragcatga cagatagaat cgacaggttt ctggatcgcc      1860
     tagagtcgaa catgaggcta gcacagatga cagaggccga gaaaatggaa tcactgccac      1920
     acgtgttcac gggtgttgcg gcggagtggt atgaaaataa taaagataac tggaggtgct      1980
     gggaagaatt tcgaacggca gctacaaggt ggtacgggac gaacaggcgc ttccaacagc      2040
     gcctggcctc cgacgccgaa aaacggtacc aaggcgcgca cgagcccgtg cgcgactacg      2100
     tgacgtgcct cggcggaatg atgaaagaga tgaggcctcg tccgtgcttg gagaaacagt      2160
     tagacctgct gcataaaaac ttaaaaccag aattgcaaag attgacacca cgtatggatt      2220
     gctacgattg ggatagcttc cgagagaaag cagaagaggc cgaaactgta ctggcgagca      2280
     gtcaagagta ccgcgcgcca ccgccacccg agcagactat gctagcatca ctagcgtacg      2340
     tctcaccgac gaaacgcaaa ccagccacag caccgccgaa agtcgcagca gtcgaagttg      2400
     cacaggcaaa cgacgggaac acgcaactgg cagaaatgtt tagcaaaatg ttggacgaaa      2460
     ggctggcaaa attcgagaag aaaatacgat cagaaagcga gcgcagcaac aagtatgagc      2520
     agaagagaca cagcacgcat cataacaaac accagggcaa taagccgaag agcgaagcgc      2580
     tgtgttataa ctgcaacaaa cccggacact ttaagcgaga ttgtccggag ggaaaagagg      2640
     aagcgagcgc gtgaggacgg tcgacacacg ctcgcgaaac tccaagaaga ccgaaaacaa      2700
     ggcggtgagt aggagcgcga gccctagagt caccagggca gagaagagat cagtctctgc      2760
     agcacaagct tcaagagcag aaaagaggag tgcacgcctc ggagaagcgt gcgcgggaga      2820
     accgcgcacg gcgagcgaaa gctcgcctga gaagcaggaa cgacacggcg cgataataac      2880
     gccgagtccg aaaaataaga ataaagcgcg gaaggcgggc gagagcatgc aggagcccgc      2940
     cgcgctctca tcactgtcag cagaaacagc tgacgaggga gatgaggcag gccaatgtac      3000
     gcaagagcac agagagcctg gcagaagcga gcgagatgcg gacgacgtaa tcgactcgat      3060
     tctggagagt caagcgggag aggaarataa cctcccaggc gacgaagaca atccccagga      3120
     gaaacgctgg tggatggagg caagggtcgg aagttttcga ttccgcgcct tatacgacaa      3180
     cggcgcatct cgtgtatgca tgggtccgat cggactgcag ctagcgagtg cgctgggacg      3240
     gcaactcatg ccgagtcacg gccgcggcgc caaactagca gacggtagct acacgaagat      3300
     cgtaggctac gtctggctgc ccttcagagt cggcaatgtc gagaaggaag tccgtgtggc      3360
     aataataccg gaccttccga cggactgcat tgtcggcgtc aactttatgc taacattcaa      3420
     ggcagtgtta gatcctacga catcaaagct gcatttcaag gagagtaaag agtatgtcaa      3480
     cgtcgagttg gcggcgatgg aaggaggcgc gctaactcta gcctccatgg ggctagcaga      3540
     cgtagaagag cagcagagag aagcgctgcg agcgctcctc gacaaaatta ttggcccaga      3600
     gacaggagaa ataggatgca cgacgtggat agaacaccac atcgaggtgc aaactacaag      3660
     gccaataaag caaaaatatt ttccggtctc caggaaaata gaggaggaaa tgcacgagca      3720
     ggtgaaagcc atgctcgcgg caggtataat cgaaccatcg aacagtgctt ttgcgagccc      3780
     agtggtgatg gtgagaaaag cgaatggaaa atatcgcttt tgcgtcgact ttaggaaagt      3840
     caacgcgatc acacggaacg acgcttatcc actgccacag atgaatgcga tactgaggaa      3900
     attgcagcaa gcgcgctaca tttctacgat cgatttaagt agcgcgtacc accagatacc      3960
     gctgagcgaa gagagcaagc agtatacagc tttcacggtg cctgggatgg ggcttttcca      4020
     gttcaagcgc ctacctttcg gtttatcaga agcgggagcc acgtttcaaa ggctgatgga      4080
     caaaataatt acgccagagc tgcagccaca cgccttttct tatttagatg acgtaattgt      4140
     cgcaacagaa acgttcgagg atcatgttaa agtcctcgag cgcgtgttaa aaagaatcaa      4200
     ggaagcaggg ttgactgtca acagagagaa gagcgtgttc tgcaaagaag aggtgaaata      4260
     cctcggcgtc cttgtaaaca gagacggctt caggccagat ccggagaaga tcgctccgat      4320
     agtgaatttt ccacagccga agaatctaaa acaactgagg cgtttccacg gcatggcatc      4380
     gtggtatagg caatttctag agggctacgc agcgttggcc gagccactga ctcggctaac      4440
     aagaaaagat cagccgttcg tatggggaga agaccagcag tcagcgttcg aggcgataaa      4500
     agctctcgtc gcctcggcac cagtactgca ctgtccagat ttcgaccagc aattcgtcat      4560
     acaaaccgat gcgagtgata cgggtctcgg tgttgtattg acgcaaaata taaatggaca      4620
     ggagcgagtt cttgaattcg ccagccgagt gctcacgccc gctgaaagaa actatacagt      4680
     cagcgagcgg gagtgcctag ccgtgctgtt tgcggtgcgc aagttccgcc agtacataga      4740
     aggctacgaa tttaaagtaa taacagacca cagcagtttg agatggttgt gcaatctgcg      4800
     caatccaaca ggcagattgg ctcgctgggc actcgagctg caagggcaca aatacacaat      4860
     cgaacatcgg aaaggcgccg accaccatgt gccagatgct ctgtctcgga tgtatgagga      4920
     gacagagcca gagatagcaa cagtgagtca ggatccgcaa ccccaagact gctggtataa      4980
     tggccggttc aaattgtggg gggggggggg cggatgtaca agtacaggcc ggatcctgac      5040
     atcacgggcg ccatgggaga cgacgacgat gcctggaagc tcgtcgtccc agcggaaaaa      5100
     cgactgcaag tgctgcaaga atgtcatgat cagccgacgg ctggacattt cggccgcgaa      5160
     aaaacataca agagagtgac ggaaaagtat ttctggccaa gagtgtatcg agacgtagca      5220
     agatacgtac agcgctgtcg actctgccag ctgggaaaag tggaacagcg cgcaccgcag      5280
     gggttgatgg gcaagcgcgt ggtgcgaaaa ccctggcagt gggtggcagg ggatatcatg      5340
     ggccccttgc caaagtcagc caaaggtcat gaatatgcac tggtcttcca ggatctattc      5400
     actcggtgga tagagtgcat acctctccga aaagcaaacg gcaaatcgat actcacagca      5460
     ctgaaagaaa gagtcattct gagattcgga gcgcccgaga tctttcattc cgataacggc      5520
     accgaattca gaaataaaac gataaacgag tacctggcgg ctcaaggcat ccaccattcg      5580
     tactcgccgc cgtaccatcc gcaagctaac ccggttgaac gggtaaaccg aacgatcaag      5640
     agagagatcg ccgcgttcgc ggaagaaaat catagagcgt gggatgagca tctcagcgag      5700
     atcgcattct cgtttaatac cgcggtacac gaggctacag gtgcctcgcc tgcaatgctg      5760
     aatttcggca gacaaccagc aatgccagcg tcgctcagag taaaagaaga ccaagaagcg      5820
     gcgcggcagg gagccgtggg cgattggcaa gcccgcctcg ccaagctacc agctttacac      5880
     gagcgagcaa aagccctgtc tggcgaagcg caagatcgcc acgcttcata tttcgatgct      5940
     cgtcgccgag cggcgacctt caaggtcggc gatattgtcg ccaagagaag gcacgtactg      6000
     tcgtcagctg ccggcggaat agcggcgaaa ctagctttac cgtatgtagg cccgtacacc      6060
     atcaccgcac aggtcggctc aaacacattc gagctaactg gcaaagacgg aaaaatcgag      6120
     aagctggtgc cggcagagga gatgaaaatc ttctacgata cggcagaaga cgaggcaggc      6180
     gacgaagtag acgacgaagc ggacgacaac ccaacccgac caccgaggga tgatagcgaa      6240
     gcagaggcga cgcgcgaccc gcctgcagcg tgcggagacg agccggagct cgagccgtca      6300
     gatgtaggga cgggggtcga ggataagcgc gagaaaagaa caagaaagcg tgtaaccgcg      6360
     ccagcgggcg cgtgcggcgg cagagcarcg aaagactcag taggagcggc gggggaacct      6420
     cctcgccgtc cgcgcggaag accgcgaaag attgtaacgg caagcgagcc gccggaagaa      6480
     cagcgaattg ttaagcgcaa gcccggcccg accgaagggc tcgactaaag cgaaagttag      6540
     tgataaggcg gaaacatcac cccgaaagac gcgtgcgatg aaccgcgccg cgcgagcatg      6600
     aacgcatgat tgtttatatt tttgatagct agctttcatt accataatca tcacccttct      6660
     cttacccgaa cagccgaaga tggaaccagc agagaagagc ttcgaagaag aggcccgtcg      6720
     cgaaaccggg gcggcgcgta tgctgcgtct cgcggccgcg acgggcattc gatggcccgc      6780
     agtccactcg gaggtggtgc tacaggcctt ctcggagctg gtgaccctct ccgaggtggc      6840
     gagccgtgcc cgcgaagagg ccgaacaagt ggctgatgaa tgggccgaga aggaggccga      6900
     gggccgggcc gccgagaggg ccgctgacra ggccgaagac gacctcgacg agacggcggc      6960
     cacggtgatt gagaagagtg gccgtccgac tgaagactcg ccggcggaca acaagccggc      7020
     gagcgaaggg gcaggagctt ggggtgtaac ccctgagcca tcaaccccag gggcgagctc      7080
     cctcggcgac gaagagcgcg ccgacagttg ggtggaactg cgcaaggagt tgtgcatcct      7140
     aagggacacc atccaggagt cagaggactg ggaggtgkac ctttttacgc gcttcgacgc      7200
     ctacctccag gctgccggat cgcaggccga cccagaggcg caggtgtggg cccgccgtat      7260
     agaagatcgg cgggaggagc aagtcctcct tgatggggct cggcgacgga ggcaagaccg      7320
     tcgccgcgcg ctcgaggcag aggagcgcct tgaccggctc cgcgagaagc gcgaacgcct      7380
     ggaggagaag gcgcgtctcg agaagcaggc cgcacgcgtg cgcgccatga ggaagaagtg      7440
     gcccgccaga aggagcagca gcgcgcggag tacctcagga agaagagggc agaggaaccg      7500
     cgctgttacg tgtgcggcta tccgggagtg cggcgatccc accagtgccc ggagtggaag      7560
     cgccacaagg agatactggc gtcgacacca cgagaccaca agaagaagta gaggagatgt      7620
     agaagacgga tggagttgga gggaatagag taccttggtt ttctacaatc accgtgtttt      7680
     tctttcgcta cgacgatcct tcctaccttg tcattacccc atttacagct tcaccaagtc      7740
     aggcgcgcga cgatgttgca gagctgcttc gcagggctgc gcagcgtctg gaagggggg       7799
//
ID   Gypsy-21-LTR_NVi repbase;    DNA;    INV; 931 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-931
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 780-780 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 931 BP; 209 A; 287 C; 268 G; 167 T; 0 other;
     tgtgacgagc gaacgcgaat tcgtatttcg cgcgctcgcc gcgtcgcgcg accatttcat        60
     gcgtgagggc gacgttgcca gttcggcggt actcgggaag cgcgcgcgga atcagcgcgc       120
     gagacagata ggcaaaagcg ctagtacagt caagacgtgt gagactttta ccggtacatc       180
     acccgcgatt atccgtgagt acgagacgag agagagcagc gacgacccga gaccatccgc       240
     tggaggagca cacccgagcc accatcacct cgagcacccg gggtacccca gcacgtcact       300
     gcttcagcca ggagggacgc ctcccggcca tccaggactt ttccccgtcg gcagccgacg       360
     gatacgcggc gaccgagcaa ccaacgcgcg cgtcgaaact gtaagttcgt aacattagct       420
     attgcgcgat ttatagatca ccgaatcggc tgcagacgcc gaggccgagg ctcgctgcca       480
     ccgagtcgtc ggctcgtctc cagtacgagc cgcgagtgcg aactcgtcct ctcgcgacac       540
     gcgttacatt gtatcaacat cttgagtgaa tatagacatc ttacaattgg tacacgaatg       600
     catgactatt tcttccgtat acctgttgcg tccttccgac gaacccggta gagtaaagcc       660
     ggttacatcg cggcgcggct acagagcgcg cgcctggccg gagactctat acgcgaagaa       720
     agcgcggcga gcttcgcacg ccgcgcagtt gtacaccgag gcaacccggc tgcatagtac       780
     ggagtcggca ttgcaccgac ggctaacgtc cgtcgccgac ttcagcatca tcgagggata       840
     gccgtgcgga gataaaagag tgagtaatcc ccctcgttga cgcgacagca tcttcgcggc       900
     tgtcgcgcta aagcccagtt gccccgtgac a                                      931
//
ID   Gypsy-210_AA-I repbase;    DNA;    INV; 4431 BP.
XX
AC   supercont1.2264;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-210_AA_;
KW   Gypsy-210_AA-LTR; Gypsy-210_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4431
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2264; Positions    7810    3380.
XX
CC   Positions [3537-4004] - Integrase core
CC   'CTAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..2002
FT                 /product="Gypsy-210_AA-I_1p"
FT                 /translation="MTPRSPPFRCESIEKNKLSREWETWKWSLECYFAAYD
FT                 ISDQKIMRAKLLHLGGVELQRIFRSLPEHDKSPLVALEPKVYDLAIELLDT
FT                 YFQTGRQDVIERRKLRKIKQEANEKFSHYVIRLRQQSLNCGFEKHPAKVAE
FT                 ILKEIYLIDVIVENCRSDELRKAILKRDRSIREIEEIASTIEDTDQQMKEL
FT                 KENNTSREVAVYEVNRSGQARATWRRRTTVERKPLQGYPSGRFKRQLDTKP
FT                 IPFKTSKYSCFACGQQGHLANSRDCPARGRMCRRCRELGHFETVCKKQKQG
FT                 SSAVKTQRNIHNIEESQEAQEDVEQNNDCDSEDPKKVFYAFYGGNETNVLE
FT                 GVIGGVAVMMLIDSGADANLIRYETWKMMKEKEIRVVTSTKGSTRVLKGYG
FT                 SDKPLDVVGTFKAEVTIGRSTTMAEFFVVKGGQKDILGDATAKKLGVLKVG
FT                 IDVNQINAETKPFSKINGVKAHIRMMEDARPVFQPLRRIPIPMEDAVNRKL
FT                 ENLLIRDIIEVKQGPSTWVSPLVIVGKASGEPRICLDLRRVNEAVVREHFP
FT                 MPM"
FT   CDS           3396..4406
FT                 /product="Gypsy-210_AA-I_2p"
FT                 /translation="MRMMKSHLRTNVWWSRMDQDVEKFVKQCKGCTLVSAP
FT                 NPPEPMIRRELPDQPWRDIAADFLGPLPEGQYLLVVVDYYSRFIEVCEMSV
FT                 ITAAEIIKELVTIFSRFGLPSTLRVDNGPQFSSKCEEFSDFCESNGISLVN
FT                 TIPFWPAMNGEVERQNRSLLKRLRIAQELGKDWRSEMRKYLLTYHATNHST
FT                 TGKSPAELMFGRKIRSKLPQVELTNFNDEEVRDRDAVSKEKGKVYGDAKRR
FT                 AKESEIGTGDLVVCKRMKKSNKLDADFSAEEFEVVRKVGGDVTVKSLESGK
FT                 EYRRNVAHLKRIGGKNKSKTVSENEATREKRTRVEPAKFKDFILH"
XX
SQ   Sequence 4431 BP; 1472 A; 752 C; 1069 G; 1138 T; 0 other;
     actggcgacg aggataacgg taagagcatt gctcattgta tttatttatc gaatgggaaa        60
     ccgcaatagt gcaattgaat tatggtgttg cgccacgtga tacattatta gctgagaaga       120
     aaaatgttct aaaaggtgtg ttaatggatc tatcggatga tgtactgcaa aggtatggtt       180
     aattttaagg aaaatatttg aattatatta ctctgaatcg tggatttcaa tagagtaagg       240
     gtggcgtttc aatatcatta ttcgtgaaat ttcggctcaa atgaccaacc aaaccaccta       300
     tcgatgaaaa aaaatagttg tcatagcaac atgataaaag cctaggcatg ctatgacacc       360
     acgttctccc ccattccgct gcgaatcaat tgagaagaac aagctttctc gtgaatggga       420
     aacatggaag tggtctttgg agtgctattt tgcagcttat gacatcagcg atcagaaaat       480
     aatgcgagct aaattgctgc atttgggcgg agtagagttg caaaggattt ttcgaagttt       540
     gcccgaacat gataaatcac cactagtagc tttggaacca aaggtttatg atttagccat       600
     tgaacttctg gacacttatt tccaaaccgg cagacaagat gtaattgagc gccgcaagct       660
     tcgaaagata aagcaggagg caaatgaaaa gttctcccat tatgtcatac gcttaagaca       720
     acaatcactg aattgtggct tcgagaaaca tccagcaaaa gtcgctgaaa ttctgaagga       780
     aatttatttg attgacgtca tagtggagaa ctgtcgctct gatgagcttc gcaaagctat       840
     tctcaagcga gatcgatcga tcagagaaat tgaagaaata gcgtcgacaa ttgaagatac       900
     ggatcagcaa atgaaagaat tgaaagaaaa caatacgtct cgggaagtag cagtttatga       960
     agtcaacaga tcaggacaag ctagagctac ttggcgaagg cgcactacag tggaacgtaa      1020
     accattacag ggatatccgt ctggaagatt caagcgtcaa ttggatacga agccaatccc      1080
     gtttaagacg tcgaaatatt cctgttttgc ttgtggacaa caaggtcatt tagcaaattc      1140
     acgtgattgt ccggctcgtg gccgtatgtg tcgtcgttgc cgtgagctag gtcactttga      1200
     gacagtctgc aagaaacaaa agcaaggatc aagcgcagtg aagacacaga ggaacatcca      1260
     taacatcgag gaatcacaag aagcacaaga agacgttgaa cagaataatg attgcgattc      1320
     tgaggatcca aagaaagtct tttatgcgtt ttatggtgga aatgaaacga atgtattgga      1380
     aggtgttatt ggaggggttg cggtaatgat gttgatagac tcaggagccg atgcgaactt      1440
     gattagatac gaaacatgga aaatgatgaa ggaaaaggaa atcagagtag taacatcgac      1500
     gaaaggatcg actcgtgttt taaaaggata tggaagcgat aaaccattag acgttgtcgg      1560
     tacatttaaa gctgaagtta ctattgggag aagcactacg atggctgagt ttttcgttgt      1620
     aaaaggtggc cagaaagaca ttttgggaga cgcaactgcg aaaaagcttg gggtgttaaa      1680
     agtcggcatt gatgtgaacc agatcaacgc agaaacaaag ccgttcagta aaattaatgg      1740
     agtcaaagca cacatacgta tgatggaaga cgctcgccct gtgttccagc cactacgtcg      1800
     gattccaatc ccaatggaag atgcagtaaa cagaaagctg gagaatttgt tgatacgtga      1860
     cattatcgaa gtgaaacaag gaccgtctac atgggtttct cctctggtaa tcgtaggaaa      1920
     agcgtctggg gaacctagaa tttgtttgga tttgagaaga gtgaacgaag cagtagttcg      1980
     agaacatttc ccgatgccga tgtagacgag tacttggcca gattgggtgg aggtaaaatg      2040
     tggagtaagc tggatatccg tgaagcattc catcaagttg agctggccga agattctcga      2100
     gacgtgacaa ctttcatcac taacaaaagg attgttcagg ttcaagagac taccgttcgg      2160
     acttgtaaca gctcccgaag ttttccaaag aataatggaa gaaattctag ccggttgcga      2220
     aggtacatac tggtacctag acgatgtgat ggtagaagga gaaacaaagg aaattcatga      2280
     taagaacttg aagaaggtac tgtagaaaga gatagatatt aaacaataaa tgatgtgtat      2340
     aactagtcat gtaatttttg taggtacttg atagattcaa tgaacgcggc gttgaactta      2400
     actgggagaa atgcgagttt ggggtaacaa agttagaatt tcttgggtat catatttctg      2460
     ataaaggaat cagtccatct agaacaaagg tgaacgctgt tctgtcattc cgccctcctt      2520
     cctgtgaatc ggaaattcgc agttttctag gattggcaaa ctatttgaat aagttcatcc      2580
     ctaatctcgc tactgtagct gaaccattga gagagctaac gaagaaatca gtgaaattta      2640
     tctggagcga taaacatgat cgtgcttttc agttaatcaa aaataagcta gcagcagcaa      2700
     ctaaactcgg gtttttcgat gttttggata gaaccacagt gtttgcagat gctagtccta      2760
     cgggacttgg tgctgttctg attcaaactg atagctctaa cgaatcacga gtgatatgct      2820
     acgcatcaaa atctttaact gataccgaac gccgttattg tcaaaccgaa aaggaagctt      2880
     tggcattagt gtggagtgtt gaaagattcc acattctatg gaagaccttt tgagctgttg      2940
     acagactgca aagctttgga atatttattt acacctagat ccaaaccttg tgctcggatt      3000
     gaacgatggg cgttacgtct tcaatcgttt gaataccagg ttgtacatat tccagggaat      3060
     tacaatattg cagatagtct ttcacgactt gcaacgttga aatcgcatgc cttcgatgca      3120
     gatgaggaat taattatacg ggaaatagct gtttcggcta gctcatccgt tgcactaaaa      3180
     tggaatgaaa tcagagctgc aagcgaaatg gatgatgaaa tattagagat cacacaaatg      3240
     ctcaagaatg aaaatgtgga aaacatgcca atagcataca aaattatttc gaacgatgtg      3300
     tcattgataa tgttctatta cgcgtggatc gtatcattat acccactagt ttgagaacaa      3360
     gagtagtgca aatagcacat gaagggcacc cggggatgcg aatgatgaaa agtcatctga      3420
     gaacaaacgt atggtggtct cggatggatc aggacgtaga gaaattcgta aagcagtgca      3480
     aaggatgcac cttagtatcg gcccctaacc ctccagaacc tatgattcgt cgagaactgc      3540
     cagatcagcc atggagagat atagccgctg atttccttgg tcccttaccc gagggacagt      3600
     acttgttagt cgtggttgat tactacagta gattcataga ggtttgcgag atgagtgtaa      3660
     tcacagctgc tgagatcata aaagaacttg tcaccatttt cagccggttt ggacttcctt      3720
     caactttgcg agttgacaat ggcccacagt tcagttcaaa atgtgaagag tttagcgatt      3780
     tctgtgaaag caatggaata tctctagtga ataccattcc attttggcct gccatgaatg      3840
     gagaagtaga acgccaaaat agatcgttgc tgaaaagatt acgaatcgct caggaattgg      3900
     gtaaagactg gagatcagaa atgcgaaagt atttactcac gtatcatgca acaaatcaca      3960
     gtaccacagg aaagtcacca gccgaattga tgtttggcag aaaaattaga agcaaactgc      4020
     ctcaagtaga actcactaac ttcaatgacg aagaagtacg agatagagat gcagtatcaa      4080
     aggaaaaagg aaaagtatat ggggatgcaa aaagaagggc gaaggaaagt gagattggca      4140
     caggagatct tgtcgtatgt aaaagaatga agaaaagtaa caaattagat gcagattttt      4200
     cagcagagga attcgaagtt gttagaaaag taggagggga tgtgacagtt aagtctttgg      4260
     aatcagggaa ggagtataga cgtaacgtag ctcatttgaa aagaattggg ggtaagaata      4320
     agtctaaaac tgtatcagaa aatgaagcca ctcgtgaaaa acgtacgaga gtggaacctg      4380
     caaaattcaa agattttata ctacattaat tgtgtaaaag ctaagggggg t               4431
//
ID   Gypsy-210_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   supercont1.2264;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-210_AA_;
KW   Gypsy-210_AA-I; Gypsy-210_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.2264; Positions    3379    3171.
XX
SQ   Sequence 209 BP; 83 A; 26 C; 52 G; 48 T; 0 other;
     tgtaggatct tacaccctat aaaaaccaag agcgatgaat caaagtaggc actggaaaaa        60
     agggagagtt gagtaaggaa ccgatcggtg tggatgcgga aagaaagagc ttgtgaaaaa       120
     gtagtgaaaa tataggaaaa gtgttaagag aagaattgaa gttattattt caaatagtgt       180
     cctgaaactt gctatccgaa tatcctaca                                         209
//
ID   Gypsy-211_AA-I repbase;    DNA;    INV; 4023 BP.
XX
AC   AAGE02027032;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-211_AA_;
KW   Gypsy-211_AA-LTR; Gypsy-211_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4023
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027032; Positions    1104    5126.
XX
CC   Positions [1518-1967] - Reverse transcriptase
CC   Positions [3051-3530] - Integrase core
CC   'GACAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4001
FT                 /product="Gypsy-211_AA-I_1p"
FT                 /translation="MMMDQKAMLVQGASIKPPKPLVIEENMAAKWKLWWRQ
FT                 FHWYSVATELSLKPTQTQAATFLSCIGEDCVRVLDTFGLSDAQESDIDVLK
FT                 AKFDAYFVPKSCLTYERYVYGKIVQHEGEQFDAFLTRVRKQAKKCSFSVLH
FT                 DSLVKDRLISGMVHAKLVPQLLDDTFDLQKTIDVIRNYELSLKQSQEMRKP
FT                 SVVEVDSVFKQSGSKANRIMKSEMIQCNRCGREHKRGACPAYGKKCFKCNQ
FT                 MGHFAERCFGAAASGGTKNKAIKSVSCEEESELSVEELFIGSVCDDDDSVE
FT                 EAWYEEVKIKNKKLLLKLDSGAACNVIPLKIFRGLNEELLPSKTKRLVSYS
FT                 NHKVSVAGEAKLPVVVRGKTFEAVFKVVDGEVAPILGRKTSVRLNLIARVD
FT                 QLSMDQSLFHGLGCVKGFVYDIDLVENPTFATYPPRRIPHSLRDAVKEELD
FT                 SMEKMGVIQPISEPTPVTNALVIVRQKGKLRICIDPSQVNRNLLRRTHPLS
FT                 TIEEISARICKSKFFTILDMKKGFWQIPVSERSMKYLAFSTPWGRYTCKRL
FT                 PFGLASAPEVFQKLMNTLLAGLEGVESSMDDILIHAETEEKLRELTNIVLK
FT                 RIESAGLKLNKEKCLLNQTSVKFLGHIVTQQGLQADPEKLKAIQQLKRPTN
FT                 RLELQRVLGTVNYLGKFIEHLSALTEPLRKLLVKDVEWFWDREQEDAFSKI
FT                 KCLMTSPPVLSFYDVNEAVTLSVDASSKAFGAVLMQKGKPVAYASKSLTPA
FT                 QENYPQIEKKAAAIRFACNKFHEYVYGKDLTIETDHKPLESIYKKSLDRAP
FT                 PRLKRILLDVVQYGPKVQNKKGKDIPLADILSRDVANNDDPEKADELEVHI
FT                 VLQMSKPAKLELENECARDPEIQLLMGTVMSGWPDDRRKLPLELRPYWNYR
FT                 DELSCYEGLVFKSHQVVVPKTLRQKMLSIIHSGHTGIQGCINRAKQQLFWI
FT                 GMATEIKIMVESCAICQKHQKSNQKHTIINNEVPTLPFEIVGSDLFHFHGQ
FT                 DYILIADSYSGFFDFEPLKDTSSRSVVAILKRWFACHGIPRILYTDNGPQY
FT                 ASREFANFSKQWSFDHVTSSPHFPRSNGLSERFVQTAKTILKKCSEDDSDI
FT                 QLALLLSRNTPRDNELASSSHRLMGRRLRTPLPITQKSLKPELVGNTTDAL
FT                 AAKRIKQKEYADKGGREATEFTEMQQVMVQNPKSKTWEEGEINKKLEPPRS
FT                 YLVKLADGQIVRRNARDLKNNRWSSCSNQASNDDTIIYMDTVPVQRSSEDV
FT                 RDIPTSIDQHERFNGSHVGGDFETCTRSGRVIRTRRDDDFEYY"
XX
SQ   Sequence 4023 BP; 1255 A; 789 C; 975 G; 1004 T; 0 other;
     tggtgtcaga ataagtggaa acaaacgcgg aaatcgcaaa cggtgtcgtg atagtttacg        60
     ggaatatttg agaaagtgat tcgatcgtta tgatgatgga tcaaaaagct atgttggtgc       120
     aaggagcatc aattaagccc ccaaagccgc tcgtgattga agaaaatatg gcggcaaagt       180
     ggaagctttg gtggcgtcag ttccactggt attcggtggc aacggagctt tcgctgaaac       240
     caacacaaac acaagcagct acctttctaa gctgcatcgg tgaagactgt gtgcgagtgt       300
     tggatacatt cgggctgtcc gatgcccagg agagtgatat agatgtgtta aaagccaaat       360
     ttgatgccta cttcgttccc aagtcgtgcc ttacgtatga acgatacgtg tacggaaaaa       420
     ttgtgcaaca cgaaggagaa caattcgatg cctttttgac gcgagtgcga aagcaagcaa       480
     aaaaatgctc gttcagtgtt cttcatgatt cgttggttaa agaccgcttg atttctggaa       540
     tggtacacgc gaaattagtt ccgcagttgc tcgacgacac attcgatttg caaaaaacca       600
     ttgatgtgat acggaattat gaactctcgc tgaagcagtc tcaagaaatg agaaaaccat       660
     ccgtcgtaga agtggattca gtgtttaagc agagtggttc aaaagctaat cgcattatga       720
     aaagtgagat gattcagtgc aaccggtgtg gcagagagca caaaagaggt gcctgcccag       780
     catacggcaa aaagtgcttc aagtgcaatc aaatggggca tttcgccgaa cgctgtttcg       840
     gagcagccgc cagtggtggc acgaagaata aggcgatcaa atcagtgagc tgtgaggaag       900
     agagtgaact atcggtcgag gagctgttca ttggaagtgt ttgtgatgac gatgacagtg       960
     tcgaagaagc atggtacgaa gaagtgaaaa taaaaaacaa aaagcttttg ttgaaacttg      1020
     atagtggggc ggcttgcaac gtgataccac tcaagatttt ccgtggactg aacgaagagt      1080
     tactgccatc gaaaaccaag cggctggtct cctacagtaa ccacaaagtg agcgtggcgg      1140
     gcgaagccaa attaccagtt gtcgtgagag ggaaaacatt cgaagcagtt ttcaaagtag      1200
     tggatgggga agtcgcacct attctcggtc gaaagaccag tgttcgtctg aatctcattg      1260
     ctagagtcga tcagttaagt atggatcagt cattattcca tggtcttggc tgtgtgaaag      1320
     ggttcgtgta tgatattgat ctggttgaaa atccaacgtt tgctacatat ccaccacgac      1380
     gaatccctca ttcactacga gatgctgtta aggaagagct cgattcgatg gaaaaaatgg      1440
     gtgtcattca accgattagc gagccaacgc cggtcacaaa tgcattggtc atcgtaagac      1500
     aaaaaggtaa gctgcgtata tgtatcgatc cgtctcaagt gaaccgaaac ctcctccgtc      1560
     gtactcatcc cctgtcaaca atagaagaaa tatctgcacg gatttgtaaa tcaaaatttt      1620
     ttacaatact tgacatgaaa aaaggtttct ggcaaattcc ggtatcggag cgatcaatga      1680
     aatatcttgc cttttccact ccttggggcc gatatacttg caaaagactt ccttttggac      1740
     ttgcctcggc tccggaagtt ttccaaaagt taatgaacac gttattggcg ggactagaag      1800
     gtgtggaaag ctcgatggac gatatactaa tacatgctga aacggaggaa aaattaaggg      1860
     aattgacaaa catcgttttg aaaagaatcg aatccgctgg tctcaagctt aataaggaga      1920
     aatgtctctt gaatcaaact tcggtcaaat ttttggggca catagtgaca cagcagggct      1980
     tacaggcaga cccagaaaaa ctgaaggcaa ttcagcaatt aaagcggccg accaatagac      2040
     tagaattgca gcgtgtactt ggaacagtaa actacttggg gaaattcatt gaacatttgt      2100
     cagctttaac agaaccgttg agaaaactgt tagtcaagga tgtcgaatgg ttttgggacc      2160
     gggaacagga ggatgctttt tcgaaaataa agtgcttgat gacttcgccc cctgttttga      2220
     gcttctacga tgtcaacgaa gcggtaactc tctcagtgga tgctagttcg aaagcttttg      2280
     gtgcagttct gatgcaaaag ggaaaaccag tagcgtatgc atctaaatct ttaacgccgg      2340
     ctcaagagaa ttatccccaa atcgagaaga aagccgctgc aatccgcttc gcgtgtaata      2400
     agttccacga gtatgtctat ggcaaggacc tcacaataga aacggatcat aaaccgcttg      2460
     agtcgattta caaaaagtcg ttagataggg ctcctcctcg tcttaaacga attttgctag      2520
     atgttgttca atatggcccg aaagtccaga acaagaaagg gaaggatatt ccgttggccg      2580
     atattctcag tcgggatgtt gccaacaatg atgatccaga gaaagcagac gaattagagg      2640
     ttcatatcgt gctccaaatg tcgaaacctg ctaaactgga attggagaac gaatgtgcta      2700
     gggatccaga aattcaattg ctaatgggaa cagttatgtc tggttggcca gatgatagac      2760
     gtaagctacc acttgagtta cgtccttatt ggaactaccg agatgaacta tcatgttatg      2820
     aaggtttggt tttcaaatct catcaggttg ttgtcccgaa gacgctgaga caaaagatgc      2880
     tgagtatcat tcattcggga catactggaa ttcaaggctg tatcaataga gcaaagcaac      2940
     aattattttg gatagggatg gcgacagaaa taaagataat ggtggaatca tgcgctattt      3000
     gccaaaagca tcagaaatcg aaccaaaagc atacaatcat caataatgaa gtacccacct      3060
     tgcccttcga gatagttgga tctgatttgt tccatttcca tggacaggac tacatattga      3120
     ttgcagacag ctattcagga ttcttcgatt tcgaacccct taaggacaca tctagcaggt      3180
     cggtagtggc gattctaaaa cgatggtttg cttgtcatgg aattccccga atactgtata      3240
     cagataacgg tccccaatat gcatcaagag agtttgctaa ttttagtaaa cagtggtcgt      3300
     ttgatcacgt aacttctagt ccccactttc caagaagtaa tggactttcg gaacgattcg      3360
     tccaaactgc gaaaacgata ttgaaaaagt gttcagaaga tgactccgat atacaattgg      3420
     cgctgttgtt atctagaaac acacctagag acaatgagct agcatcatca agtcatcgtc      3480
     taatgggtcg ccgattgcga acacctttgc cgattactca gaaatctttg aagccagaac      3540
     ttgtcggtaa tactacagat gcattagcag ccaagcgaat aaaacagaaa gagtacgctg      3600
     ataaaggagg tagagaggct acggagttca ctgagatgca gcaagttatg gtgcagaatc      3660
     cgaagtcgaa gacttgggaa gaaggcgaaa tcaacaagaa gctggaacca ccaagatctt      3720
     atctcgtaaa acttgcagat ggtcagattg tacgcaggaa tgcccgtgat ctgaagaaca      3780
     atcgctggtc atcatgttcc aaccaagcat cgaacgacga tacaattatc tacatggata      3840
     ctgttcctgt acaacgttca tcagaagacg ttcgagatat cccaacatca attgatcaac      3900
     acgaaaggtt caacgggagc cacgtcggag gtgacttcga aacatgcaca cgaagtggtc      3960
     gtgtgattcg cacaagaaga gatgatgact tcgaatacta ttgatgttct tcgaaagggg      4020
     aga                                                                    4023
//
ID   Gypsy-211_AA-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   AAGE02027032;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-211_AA_;
KW   Gypsy-211_AA-I; Gypsy-211_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-161
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027032; Positions     943    1103.
XX
SQ   Sequence 161 BP; 48 A; 37 C; 25 G; 51 T; 0 other;
     tgtaacatag tttgtaattg actgttgtat aacccctcgt tatggtaact tccttatgga        60
     gcacacacac atatacactt ccttgttatg taccttgaga gaaaccgtca aataaatcag       120
     tatgttcaag acacgcgtcc gagttacacc tcattcttac a                           161
//
ID   Gypsy-212_AA-I repbase;    DNA;    INV; 4749 BP.
XX
AC   supercont1.5;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-212_AA_;
KW   Gypsy-212_AA-LTR; Gypsy-212_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4749
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.5; Positions  732451  737199.
XX
CC   Positions [2160-2702] - Reverse transcriptase
CC   Positions [3774-4256] - Integrase core
CC   'CAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..4676
FT                 /product="Gypsy-212_AA-I_1p"
FT                 /translation="MSESESDLSFEEALGRLSVGGGSDQRVSGTVKIEKDN
FT                 DLPPNVVDRSKKNKHSYKLKMEEQYKAEIEALRTELAQVKLAARSASQAVA
FT                 STSATMNTRMPDFRELKEYVSTFDPKVPSCLSADIWVKSIDDTGDVYEWTN
FT                 AVRLHCARLNLGGCAKLWLESCPNAMRDWATFKAEIVKGFPSKKNPIYYHN
FT                 LLSSRKWKPGEIVEEYVYEMLALGRKGGFDEETTVTYITSGLRQYVKRSGM
FT                 TIGKVCTVETLLEELRWIDSVDAVAASKVADPSPAVQSAQRKSESFSDVCF
FT                 QCHQAGHIARRCPRVMCHLCKKEGHMKKECPSVAFKREAPRNQTPKPMRVI
FT                 DQKSAFVKNVLVGGVSMRALVDTGGKVSTIQEKFAKNVGEIKPSQKVLRGF
FT                 GKKEIAVTSKVCAELQVDGVSLPVELQIVPTWVQDTAVILGEDIIDSEGLV
FT                 MMKRKGDVRFEWDGAQQQRQSPREPRPRDSSVESSIANMYTIDVESKGQAI
FT                 TENQINSDGSVEYNTHLCRLIANYRDCFALNMREMGRATSAEMKISLTSDE
FT                 PVYVKPRKLEYARESVLAEIVHDLLEAGIIAETESPYNSQVVLVPKKNNEF
FT                 RMAIDYRLLNSRTIKDKFPMPDIESCLQKLAGADLFITIDLYSGYYQIPLE
FT                 PESQNFTAFSTVDGHYRFLRMPFGLVNGCAVFQRAMNKIVEKLRKQKIIIV
FT                 AYIDDLILPGKTEEELLHKLERLLVALREEGFTINLKKSYFFMRQVDFLGF
FT                 EVGKEGVRPGERKTTAVAEFPVPETVHTVQQFLGLSGFFRRFVQNYSLIAE
FT                 PLFRLLRKEAEFVWEAEQQQAFDKLKELLVERPVLVLYDPNAEVELHTDAS
FT                 SVGVAGILLQKVNDVWKPVSYFSKKNSKTEVNYHSYELEMLAVVASVDRFR
FT                 QYLVGRFFVIRTDCSAIRDAYAKKEMNKRVARYFLKLLEYDFRIEHREGSR
FT                 MQHVDALSRSPTEEPRELETVADCIMVLELSNSDFLVSMQRQDPRLLAVID
FT                 KLANDPRCDEDRQIQQNYVVENNRLYRKIGDRKCWVVPNSVRWRIVKSYHD
FT                 DKGHFGEQKVLSMLQDLFWFPKMRKYVRAYIAACPKCAFFKSKPGRPEGFL
FT                 NPIPKTPVPFHTVHMDHLGPFPRSAKGNEHILVVICGFTKFLLMKAVKTTN
FT                 AQPVVTMLEEISCVFGLPSRIITDRGTAFTSNVLQKFCDDYGIDHVLVAVG
FT                 TPRGNGQVERSNRTILTAIRTMVDSGDRKWDEKVRAVQSAINTAPNATTGL
FT                 SPTSLVLSYRPKDMVQNEIVSVIAVESENPQVTTDELRERVQHATQVSQTR
FT                 QKKYYDDHRREAQKYEVNYIVLVAKDQYIPGGSRKLEARFKGPFIVSEVLT
FT                 NDRYRVTTVPGFETARWFSTVYSADRMKRWCSIADLEDTVHSSDEEEY"
XX
SQ   Sequence 4749 BP; 1345 A; 883 C; 1324 G; 1197 T; 0 other;
     tcctgtagac aggatagaga tctcgggtaa aaccgtacta gtgagttagt cggtggtgat        60
     cgcgtagata tattccgtgt ggggatatcg cggtgtgata cacttcgtgt tagtgcgtga       120
     cacgggatcg agacttgcgg aagaagcaat atactttcag tgccatgagc cctcatgaaa       180
     accgcgtggt tggaccatta caatagctta gtgtccgggg acagtgcgat tcaatagcta       240
     ttatctacgg agtataatag gtcaaaagct ccatcgtgcc gcgtccgtgt agttgagtgt       300
     tcttttgtcg ggaacgactc tgttgctgtc tcaggtgagg gtagctgagt gagatcgctg       360
     gaaatcggct atcgtgtgag atctttggag agctggactt tagatgccac gcagtggtga       420
     aactttagtg aagagtgagg gttatgagtg agagtgaaag cgacctctca tttgaagaag       480
     ctttaggccg cctgagtgtc gggggtggta gtgaccagag agtttctggg acagtgaaga       540
     ttgagaaaga taacgatcta ccaccgaacg ttgtagaccg cagcaagaaa aacaaacatt       600
     cgtataagtt gaaaatggaa gagcagtata aagccgaaat cgaagctctc agaactgagc       660
     tcgctcaggt caaactggct gcccgaagtg cttcacaagc agtagccagt acgagtgcta       720
     ctatgaacac acgaatgcct gattttaggg aactaaagga gtatgtgtca acgttcgatc       780
     ccaaggtacc ctcgtgttta tctgctgata tatgggtaaa gtccatagac gacactggag       840
     atgtatatga gtggacgaat gcagtccgcc ttcattgtgc aagattgaat ctcggtggat       900
     gcgccaaatt atggctggaa agttgtccaa atgcgatgag agattgggca acctttaaag       960
     ccgagatagt gaagggtttc ccctccaaga agaacccaat atattatcac aacttgcttt      1020
     cttctcgtaa gtggaagcct ggagagatcg tggaagaata tgtctacgaa atgttggcat      1080
     tgggacgaaa aggtggattt gatgaagaaa ccacggtgac gtacattacg agcggtctac      1140
     gtcaatatgt aaagcgatct gggatgacta tcggcaaagt gtgtacagtg gaaacattac      1200
     ttgaagagtt gagatggatt gacagcgtcg atgcggtggc tgcctccaag gtggcggatc      1260
     ctagtccagc agtgcaaagt gctcaaagga agagtgagtc gttttcagac gtctgtttcc      1320
     agtgtcacca agctggacat attgctcgtc gttgtcctag agtgatgtgc catctttgca      1380
     aaaaggaagg acatatgaag aaagaatgtc cctctgttgc gttcaaacgc gaagccccca      1440
     gaaatcaaac cccaaaaccg atgcgcgtga tagatcagaa aagtgccttc gtgaaaaatg      1500
     tgcttgtggg tggtgtttcg atgagagcgc tagtggatac gggcggaaaa gtttccacta      1560
     ttcaagaaaa gtttgcgaag aacgtcggtg agattaaacc gagccagaaa gtgcttcgcg      1620
     gtttcgggaa gaaggagatt gctgttactt cgaaagtgtg cgccgagttg caggtggatg      1680
     gtgtgtccct gccagtggag ttgcaaatcg taccaacctg ggtacaagac acagcggtga      1740
     ttttgggcga agatattatt gatagtgagg ggttagtgat gatgaaacgc aagggcgatg      1800
     tgcggtttga gtgggatgga gcacaacaac aacgacaatc gccacgtgaa cctcgccctc      1860
     gtgatagcag tgtagaatcg tcgattgcga atatgtatac gattgatgtg gaatcaaagg      1920
     ggcaagctat aaccgaaaat cagatcaaca gtgatggatc ggtagagtac aatacgcatt      1980
     tgtgccggtt gatagctaac tacagagact gctttgcgtt gaacatgaga gagatgggtc      2040
     gtgctacgtc tgccgaaatg aagatcagtt taacgagtga tgaacctgta tatgttaaac      2100
     cacgaaaact tgagtacgcc cgagagagtg ttttggctga aatagtgcac gatctgttgg      2160
     aagctggtat aatagctgaa actgagtccc cttacaatag ccaagttgtg ttggtaccaa      2220
     agaagaacaa tgagtttcga atggctattg actatcgtct tctcaactcc cgaacaatca      2280
     aagataaatt tccgatgccc gatattgagt cgtgtttgca aaaattagcg ggggcggatt      2340
     tgtttatcac cattgattta tatagtggtt attaccaaat tccactagaa ccagaaagcc      2400
     aaaactttac tgcgttttca acggtagatg ggcactaccg ttttcttcgt atgccctttg      2460
     gactggtaaa tgggtgcgcg gtgtttcaaa gagcgatgaa taaaatagtg gagaagttga      2520
     gaaagcaaaa aattattatt gtggcgtaca ttgatgattt gattctgccg gggaagacgg      2580
     aggaagagtt gttacacaag cttgagcgac tgttagtggc attgcgcgaa gagggtttca      2640
     ctataaattt aaagaagagc tactttttca tgcgtcaagt tgatttcttg ggatttgaag      2700
     ttggtaaaga aggtgtgcgg ccaggtgaac gaaaaacaac ggctgtcgca gagtttcctg      2760
     tgcccgagac agtacacaca gttcaacagt tcctgggatt gtcgggattc ttcagaagat      2820
     ttgtgcagaa ttacagcctt atcgcggaac ctctattccg cttgctacga aaagaggccg      2880
     agtttgtgtg ggaggcagaa caacagcaag cgtttgataa acttaaggag ctgttagtgg      2940
     aaaggcccgt gcttgtgcta tatgatccaa atgcggaagt ggaattacat accgatgcgt      3000
     caagcgtcgg cgtagcagga attttgctgc agaaagtgaa cgatgtgtgg aagccagtga      3060
     gttatttcag caagaagaat tcgaagaccg aagtgaacta tcatagctac gagctggaaa      3120
     tgttagctgt ggtggcgagt gttgatcggt tccggcaata cttggtagga cgtttctttg      3180
     tgattcgcac agattgctcg gcaattcgtg atgcttatgc gaaaaaggaa atgaataaga      3240
     gagtggcgcg atattttttg aagcttctag aatatgattt ccgtatcgaa catcgtgagg      3300
     gctctaggat gcaacatgtc gatgcactga gcaggtcgcc tacagaagaa ccgcgcgagc      3360
     ttgaaactgt ggcggattgc attatggtgt tagagttatc gaattcggat ttcttggtca      3420
     gtatgcaacg acaggaccct cgtttgctag cagtgattga taaactggcc aatgatccga      3480
     ggtgtgatga agatcgacag atacagcaga actacgttgt ggagaataat cggttgtatc      3540
     gaaagattgg tgatcgaaag tgctgggtcg tcccaaacag cgtgcgctgg cgtatagtga      3600
     aaagctacca cgacgataaa ggacattttg gcgagcaaaa agtgttatcc atgctgcagg      3660
     atttattttg gttccctaaa atgagaaagt acgtccgtgc gtacattgcg gcttgtccaa      3720
     agtgcgcgtt ttttaaatca aaaccaggtc gaccagaagg gtttctcaac ccgataccga      3780
     agacccccgt gccctttcat acagtgcaca tggaccattt aggtccattc cctaggtcgg      3840
     cgaaaggcaa cgaacacatt ttagtggtga tttgtggatt cacgaagttc ttgctgatga      3900
     aagcggtgaa aactactaac gctcagccag tagtgacaat gctggaagaa atttcctgtg      3960
     tttttgggtt gccgtctcgt ataattactg accggggtac cgctttcact tcaaacgtgc      4020
     tacagaagtt ttgtgacgat tatggaatag accacgtatt ggttgctgtt ggaacgccga      4080
     gaggaaatgg tcaagtggag cggagcaacc gaaccattct taccgccatt cgaaccatgg      4140
     tggattcagg cgaccggaaa tgggatgaga aggtgagagc agtgcagagt gccatcaata      4200
     ctgcaccgaa tgcgacgaca ggcctctcgc caacgtcatt ggtgttgtcg tacaggccga      4260
     aagatatggt gcaaaatgaa attgtgtcag tgattgcggt tgaaagcgaa aatcctcaag      4320
     ttactacaga tgagctacgg gaacgagttc aacatgctac gcaagtgagt caaacacggc      4380
     agaagaagta ctacgatgat catcgacgtg aggcccagaa gtacgaggta aattatatag      4440
     ttttggtggc aaaggatcag tacattccgg ggggaagtcg caagttggag gctcgattca      4500
     agggcccatt cattgtatcg gaggtgctga ccaacgatcg ttatcgcgtc acaacggtgc      4560
     ctggctttga aacggcaaga tggttcagta ccgtttactc agcggaccgg atgaagcgat      4620
     ggtgttcaat tgcggatttg gaggacactg tacatagcag tgatgaagaa gagtactgaa      4680
     aactttgaat ttgttaatga aagtgaatag aatgacgatg aggacatcta tgaagtctgg      4740
     gtgtccgaa                                                              4749
//
ID   Gypsy-212_AA-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   supercont1.5;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-212_AA_;
KW   Gypsy-212_AA-I; Gypsy-212_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-196
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.5; Positions  732255  732450.
XX
SQ   Sequence 196 BP; 68 A; 45 C; 28 G; 55 T; 0 other;
     tgtaaagtat atatcaaatg ggaagaaccc acagtgaatt tattatacca cttacacaat        60
     caaacaatat ccaaaggtac ccttttataa tttgaaacct acaatacacg aggcagtctc       120
     aaaaacgtat cccgtgcaga cagttctgtt ggctatccga aaagcctgtg acccctatct       180
     ctatcgtttt attaca                                                       196
//
ID   Gypsy-213_AA-I repbase;    DNA;    INV; 5648 BP.
XX
AC   AAGE02029464;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-213_AA_;
KW   Gypsy-213_AA-LTR; Gypsy-213_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5648
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029464; Positions  137856  132209.
XX
CC   Positions [4608-5075] - Integrase core
CC   'AAAGT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           669..2177
FT                 /product="Gypsy-213_AA-I_2p"
FT                 /translation="MYFSLFLKDFGTRVRIGNYQSVWPLLFVIRKTKRTSD
FT                 EVSLFFFRSESPDTIYITRPKVTKTELRNKLKSEKARTAALLEEIKQLREE
FT                 NEQLRKSSAEVLAVATNSNDVETNMVPSGTQQTESSVKNEESKLLSSVHQL
FT                 SISSLNVPECKPDVEGEGIQRHSFEMWRDLLIDSMKLLGVNDEPTMFTIFR
FT                 VKAGQQLLEIFKNTKSDSLAPDENEFPFSNALHRLKSYFGSGSDVLLQRRK
FT                 LAVMDQKSNESDLSYISRVGAVARLCDYEEGKEFEQIVSTIAEHATSKEVR
FT                 AIALKMLSRNASFTDLVDKIRELEAIRLNEEFFMKKRMKSEPAAALAPVRA
FT                 DFPGQPRYEHRSPQNYFPARSYNRSSTGSGRYSRSRANSTGGRREFSRYYR
FT                 SPRDRNLVPPRDRSIGASREREGRCWRCNSVYHLPVDCDAADKICRNCGVM
FT                 GHIARACTRRFPTSSSSRKRYSEADITGDGPSAKRMAAIEAPKVENVDKEE
FT                 VSGFDEA"
FT   CDS           2363..4081
FT                 /product="Gypsy-213_AA-I_1p"
FT                 /translation="MISVTLAGMPCEFLIDSGAQVNTISEKNFIKLNSDEK
FT                 YREQIFNFRRQTDRSLKPYASSEYIKVLGTFEAPLYISDDRPVLLEKFYIV
FT                 NERYSLLGRSTAIRYCVLLLGFKVPAHSISINAEANDQIKSIRSLNTGVAF
FT                 PKFNIPPVVIHYDKSAPPCRNIFTNIPISLKPIVHQRLLELVRADIIEPVK
FT                 PNMDTSFCSSMLVVPKGKDNIRLVIDLRGPNRYIMRTPFAMPTLETILAEL
FT                 SGARWFSTIDLSNAFFHIELAEESRHLTNFFTEFGTFRCVRLPFGLCNAPD
FT                 LFQEALERKVLAGCPGVKNYLDDVLVFGRTEAEHDENLRQVMARFNDHNVK
FT                 LNEAKCHFKKQSVTFVGFKLTADGWEVEEEKINAIQNFRKPTSCQEVKSFL
FT                 GLVTYIDRFLISRAEKTEYLRRLANSETFYWTTDEDNEFESLRNISTYTIK
FT                 RLGYYSPEDRTELFVDASPIGLGAILVQFNSQSIPRVIACASKSLTATEQR
FT                 YPQTHKEALAVVWGVERFATYLLSKSFIVRTDSEANQFIYNGKYRLGRRAV
FT                 SRAESWALRLQQYDFRIERVPGEFLW"
FT   CDS           4236..5627
FT                 /product="Gypsy-213_AA-I_3p"
FT                 /translation="MELTWHRIELSSENDHELQSVKEAIESGYWGSDLTKF
FT                 EPHKKELRFLGNLLFKDNKVILPLSLRNEAMKSAHEGHVGEMAMKRIMREF
FT                 FWWPGMSAGVEKFVRNCETCIRLSKKNPPVPLSSRELPDGPWEVIQIDFLS
FT                 LPGCGSGEFLIVVDIYSRYLSVVEMRCMDAESTNAALCSIFQLWGLPKIMQ
FT                 SDNGPPFQGTNFVSTWEDRGVRVRKSIPLSPQSNGSVERQNQGIIKAVAAS
FT                 KIDKLSWRNAIQKYVHHHNTVVPHSRLNATPFELLVGWKFRGTFPSLWSAK
FT                 RLDRTDIRERDAESKLKSKRYADKTRHATASDIVMGDWVLLAQHKRSKTDP
FT                 TFPADRYRVIAIDGPKITVMSKNGIQYSRNIQEVKRVPFFEEQTIIQPPEF
FT                 DTDNNSSYADKDDQEGFSSLPSPAHDNEGFDDSRDDAAPNNPAKNRNLRPR
FT                 AVLRKPSRFDDKFVYTVIN"
XX
SQ   Sequence 5648 BP; 1734 A; 1110 C; 1317 G; 1487 T; 0 other;
     atggcgcagt ggaggaaagc agttctcggc ggaggtaagt atttttttta tttttatatt        60
     taattgaagt gaagtgaaaa gaaatgacgg catcaaaaat caattaagac agtgcagtat       120
     tctaggtcaa gcgataggac ttgacaagag aatgcaagaa gtatttccgg cgaaagtaaa       180
     gtgaaatgag aaattgattt taaatcatga gaatttgaat ttatttattg atttttttca       240
     agtagaagga gcgagaggcc tcctcgaaaa gaaacatcgg agtgtgtggg tttcatccgg       300
     aatcaaagtt ttatttcgac agtaaagtat gctcggtcaa gcgataggac ttgacaagag       360
     aatttaagaa gaatctatcg cggaagtgaa gtccgtgcga tgtttttttt tttaatcaag       420
     aatttgagcg tattttgttg attttttttt ttcacaattt gaaggagcga gcggcctcct       480
     gggaaaaaaa aacggagagt gtcaatttga ttccagcatc aaaattccat tcagacattg       540
     aagtatttta ggacaagtga tagggcttgg taagagattg caagaaaaat ctctgatgga       600
     agtgatgaca gtagaaatta tatttcggga gaagtgagtg gactctccga gatgaaaaat       660
     cgaaatgtat gtatttttcg ctatttttaa aagactttgg aacgcgtgtt agaattggaa       720
     actatcagag cgtttggcct cttttattcg tgataagaaa aacgaaacga acatctgatg       780
     aagtgtcttt gttttttttt cgcagcgaat cgccggacac gatttacatc acgcgaccaa       840
     aagttacaaa aactgaactc agaaataaac taaaatccga aaaagctcgt actgctgcgc       900
     tgcttgaaga gatcaaacaa ttgcgggagg aaaatgaaca gttgcgcaaa tcgagcgcag       960
     aagttcttgc ggttgctacg aatagtaatg atgtggaaac caatatggtt ccaagtggca      1020
     ctcaacaaac cgagtcatcg gtcaaaaatg aggagtcgaa gctgttgtct agtgttcatc      1080
     agctttccat ttcttcttta aatgttccgg aatgcaaacc ggatgtagaa ggcgaaggca      1140
     tacagcgcca ttcattcgaa atgtggcgag acttactgat tgattcgatg aagttgctgg      1200
     gagtaaatga tgaaccgacc atgttcacca tttttagagt gaaagctgga caacaactcc      1260
     ttgaaatctt taaaaatacg aagtcagact ctcttgcgcc ggatgaaaat gagtttccct      1320
     tctcgaatgc tctacaccgg cttaagtcgt acttcgggtc tggttcagac gttctgttgc      1380
     aaagacgaaa gttggccgtg atggatcaaa aatcgaatga atccgatctc tcctacatca      1440
     gtcgtgtggg agcagtggct cggctttgcg actatgaaga aggcaaagag tttgagcaga      1500
     tcgtaagtac catcgccgaa cacgctacaa gtaaggaagt tcgtgccatt gctctcaaaa      1560
     tgttgagtag aaacgcatca tttacggacc tcgtggataa aatccgagag ctggaggcga      1620
     ttcggctaaa cgaagagttt tttatgaaga agcgaatgaa gtctgagcct gcagcagcgc      1680
     tagcaccagt acgagcggat tttccaggtc agccaagata cgagcataga agcccacaaa      1740
     actatttccc cgctagaagc tacaatcgtt cgagcaccgg gtcggggagg tactcgagaa      1800
     gtcgtgcgaa ttccactggc ggtcgccgtg agttcagcag gtactacaga tcacctcggg      1860
     acaggaatct agtaccacct cgtgatagga gcatcggtgc atctcgtgaa cgtgaaggca      1920
     gatgttggcg gtgtaacagc gtctaccact taccggtgga ttgcgatgcg gcagacaaaa      1980
     tatgtcgaaa ttgcggtgtg atgggacata ttgcgagagc ttgtacccga cgattcccca      2040
     caagttcgtc atcacgtaag agatattcgg aagcagacat cactggagat ggtccaagtg      2100
     cgaagcggat ggcagctatc gaagctccaa aagtagagaa cgttgacaaa gaagaagtaa      2160
     gtggatttga cgaagcctga agtttcaagt cgctaaattt gaattctgaa atattgtttt      2220
     ttcttttttg aatgaaatga tgtatctttt tttgacttat tgataaatat aataaactga      2280
     agcattttga ttattttttg tccaggtaat atcatctgat atattcgaat tggtatctgc      2340
     acttaacatt ggagatgaag ggatgatctc agtaacgtta gctggcatgc cctgcgagtt      2400
     cctgatcgac tccggggctc aagttaacac aatttctgag aaaaatttca taaaattgaa      2460
     cagtgacgag aaataccgag aacaaatttt caatttccgt aggcagacgg atcgttcttt      2520
     gaaaccatat gcatcttctg agtacattaa agtgctcggc acgttcgaag ctcctctgta      2580
     catatcggat gacagaccag tactcctcga aaagttttac atagtaaatg aacgttactc      2640
     tttactcgga aggtcgaccg caatccgcta ctgtgtgtta ttactgggct tcaaagttcc      2700
     agcacactca atttccatca acgcggaggc aaatgaccaa ataaaaagca tacgatcgtt      2760
     aaacacaggt gtagcatttc ctaagttcaa cattccgcct gttgttatac actatgataa      2820
     gtcagcgcca ccatgcagga atattttcac taatattccg atttcattga aaccaatcgt      2880
     gcatcaaagg ctgttggaat tggtcagagc ggatatcatt gaaccagtga aaccaaatat      2940
     ggacacatca ttttgttctt cgatgctggt ggttccgaaa ggcaaggaca acattcgatt      3000
     ggtaatcgac ttgagaggtc caaatcgtta tataatgaga acacctttcg ccatgccaac      3060
     tcttgaaact atcctcgcag aacttagcgg agcccgttgg ttttcgacca tcgatctttc      3120
     aaacgcgttt tttcatatcg agctagcaga agagtcccga catctcacga acttttttac      3180
     tgagtttgga acgttcagat gtgtcagatt accgtttgga ttatgcaatg ccccggattt      3240
     gtttcaggag gctttggaac ggaaagtatt ggcaggatgt cccggagtaa aaaactacct      3300
     cgatgacgta ttggtgttcg gccgtacaga agcagagcac gatgaaaatc tgcggcaagt      3360
     catggcccga tttaatgatc ataatgtaaa acttaacgag gctaaatgcc acttcaagaa      3420
     gcagtcagtc acgtttgtag gcttcaaatt aacggcagat ggatgggaag ttgaggaaga      3480
     aaagattaac gcaatacaaa acttcagaaa gccaacatcg tgccaagaag tgaaaagctt      3540
     ccttggactg gttacgtaca ttgaccgatt cttgatcagt cgagccgaga aaacggaata      3600
     cttgcgccgg ttggcaaata gcgaaacctt ctattggacc accgatgaag ataacgaatt      3660
     tgaatcactt cgcaacatat caacatatac tatcaagaga ttggggtact atagtcccga      3720
     agacagaacg gaactttttg ttgacgcctc cccaataggt ttgggagcca ttcttgtcca      3780
     gttcaacagc cagtccatac ctagagtgat cgcgtgtgct tccaagtcac tgacagctac      3840
     agagcaacgt tatccccaaa cgcataagga ggcactagcc gtggtatggg gagtggagcg      3900
     atttgcgacc taccttttga gcaagtcctt catcgtgcga acggactcag aagctaatca      3960
     gttcatctac aatggcaagt acagattggg aagacgcgca gtctccaggg ctgagtcatg      4020
     ggctttacgt ttacagcaat acgattttcg catcgaaaga gttccaggtg agttcctgtg      4080
     gtaacagacc ttaaacatgt tctcaccgat tttttataat aggtaactgc aatgtggcag      4140
     acgcgctctc tagattggta catgatgcaa aggaagcagt tccatttgaa agtgataatg      4200
     aaaaccattt cttgtattca ctcgatttcg caagtatgga acttacatgg catcgcattg      4260
     aattgtcttc cgaaaatgac catgagttgc aatcggtgaa agaggccatc gagagtggtt      4320
     attggggatc cgatttgacc aaattcgagc ctcataagaa agagctgcgg tttctaggta      4380
     atctgctgtt caaagacaat aaagtgattc ttcctttgtc tctaagaaat gaagcgatga      4440
     aatcagcaca cgaaggacat gttggagaaa tggcgatgaa aaggattatg cgagaattct      4500
     tttggtggcc aggtatgtca gcaggtgtgg aaaagtttgt cagaaactgt gaaacatgta      4560
     taaggttatc taagaagaat ccaccagttc cattatcatc ccgcgaactt cctgatggac      4620
     cttgggaagt aatacaaatc gatttcttgt cccttcctgg ttgtggctct ggagaatttc      4680
     ttattgtcgt tgacatatat tcacgttacc tgtccgtggt cgaaatgcga tgcatggatg      4740
     cggaaagtac gaatgcagca ttatgcagta ttttccagct ctggggtctc ccgaagatta      4800
     tgcaaagtga caatggcccg ccatttcaag gaactaattt tgtttctacg tgggaagata      4860
     gaggagtaag agttcgtaag tcgattccac tgagccctca gtctaacggc tcagttgaac      4920
     gccaaaatca gggcattata aaagcggtag cagcttcaaa aattgacaaa ctcagttgga      4980
     ggaatgccat tcagaagtat gtacaccatc acaacacagt agtaccgcat tctcgtttga      5040
     acgccacccc cttcgagtta ttagtaggat ggaagttcag aggaacgttt ccttcgttat      5100
     ggtcagctaa gagattggat cgaacagaca ttcgagaaag agacgccgaa tccaaactga      5160
     aaagcaaacg atatgcggac aaaacgcgac acgctacggc ctccgatata gtgatgggag      5220
     attgggttct attggcgcaa cataaaagaa gcaaaactga tcctactttt cctgcagaca      5280
     gataccgcgt tattgctatc gatggaccaa aaatcactgt gatgagtaaa aatggtattc      5340
     aatactccag aaacatccag gaagtaaaac gtgtaccatt tttcgaagag caaacaataa      5400
     tacaaccgcc agaattcgac acggacaaca actcaagtta tgcagacaaa gatgatcaag      5460
     aaggcttctc atcactacca tccccggctc atgacaacga aggttttgac gattcccgag      5520
     acgatgccgc acctaacaac ccggctaaaa atagaaattt gcgtccccga gccgttctac      5580
     gtaaaccatc gaggtttgac gacaaatttg tgtatacagt tataaattag agtagacata      5640
     gtaagaaa                                                               5648
//
ID   Gypsy-213_AA-LTR repbase;    DNA;    INV; 607 BP.
XX
AC   AAGE02029464;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-213_AA_;
KW   Gypsy-213_AA-I; Gypsy-213_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-607
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02029464; Positions  132208  131602.
XX
SQ   Sequence 607 BP; 160 A; 137 C; 151 G; 159 T; 0 other;
     tgtaggatat tatactgatt gaaaataata tacatctaaa tttacaaata tgagctgaaa        60
     aatgcgtatc gaaaatattc atatcacaaa cttcccatta gcaaagctta atgttgtgaa       120
     tgacggcttt tccttatatt tcaatacccc actctcacat tcagcaacag aatcgttccg       180
     tatccatgtg gggcgtgcct aacgggtcgc attattcatc ggttcattgc atcatttagg       240
     tgtataaaag cagcacgcta cggagggagc gctcattcta ttggcgaaat tcggcgagtg       300
     cagatcggtc ggaaaggaac cgcagcagca aacgaaaggt cttgcagtgg aagagcgtgt       360
     ggtctcgtaa ccatcgtaac agcggcatcg aaacgagcgt gtggtctcgt aaccatcact       420
     gtgcgtcagt cttcgtgccg agtgggtggt catcgatcca gcgaagcgag tcgtgcgtta       480
     ggctcgtgat cttgccgacg ggtttttcgg agcggaacat cgatccgagc ggtaggcctc       540
     gttactagct cactcatcgg attcctcgtt tgaaccgttc gacgtcgagt cacgatgaat       600
     tacgaca                                                                 607
//
ID   Gypsy-214_AA-I repbase;    DNA;    INV; 6234 BP.
XX
AC   supercont1.9;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-214_AA_;
KW   Gypsy-214_AA-LTR; Gypsy-214_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.9; Positions 1367470 1361237.
XX
CC   Positions [3512-4048] - Reverse transcriptase
CC   Positions [5150-5617] - Integrase core
CC   'GTGGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3044..5746
FT                 /product="Gypsy-214_AA-I_1p"
FT                 /translation="MFSTLMADETYRREVFNVKQGTDRSLKGYASSSTIHV
FT                 AATFEAYMFITNDRPMLLEKFYVVNERQALLGRFTAARYSILMLGVKVPLT
FT                 TALKVDSSSTRGEVATIDIYEKFPKFNVPPVRIEYDKSKPPCRNVFMNIPQ
FT                 AVKPLVEDRLRKLEMTDIIERVTDDMDASFCSSMLVVPKGKDDIRLVIDLR
FT                 GPNRYVYRSPFAAPTLEGILAELHGAKWFSTIDLSNAFFHIELDRESRHLT
FT                 NFCTEFGMFRFVRLPFGLCNAPDVFQETLQRKILGNCKGVKNYQDDVLVFG
FT                 KTKEEHDENLEAVLDRLRNHNVKLNESKCVFASQTVTFLGFTITPDGWKIE
FT                 EGKLDAIENCRRPETCSEVKSFLGLITFVDCFIPNRADLTQYLRALANADK
FT                 FYWSDNEEQEFQFLRTRALKTIKTLGYYSQTDPIELYVDASPVGLGAVLVQ
FT                 HDKDKTARIIACASKSLTATEKRYPQTHKEALAVVWGVERFSTYLLSRYFV
FT                 IRTDAEANQFIFNGTHRLGKRALSRADAWALRLQSFDFSISRIPSNMNIAD
FT                 ALSRLIEQTQDPIPVDVDDENHFLYALDVGYMNITWDEIERHSEEDPELKN
FT                 VQSALRCNFWPPDLRKYEAQRKNLRFLGFLLFKDDRAVLPESLRQMALQSA
FT                 HGGHVGIVAMKKILRQFFWWPGMSTAVERFVKGCEVCMQLAKKNPPIPLSS
FT                 RVLPEGPWEILQIDFLKVPGFGTGEFLVVVDTYSRYLNVVEMKQTDADTTN
FT                 AALHGVFKHWGFPLTIQSDNGPPFQSANFTKHWENKGVKVRKAIPLCPQTN
FT                 GAVERQNPGIIKALAASKLEGSNWRHALETYVHHRNTLVPHSRLGITPFEL
FT                 MVGWRYRGTFTSLWNPSSTDLDRTDVRELDDDAKLKSKKDADQYRNAR"
XX
SQ   Sequence 6234 BP; 1955 A; 1246 C; 1478 G; 1555 T; 0 other;
     ttggcgcaga caacgctccg agagggtaag tattcgtatt gcagcggatt ttggaaatta        60
     ctcccaaaat actacgtgaa aacatgaatt tgtttcaaga catttcaaca tggccgccca       120
     ggattgatgt gatagtaaaa ttccaagaga agggaaaacg tttcagtagg ctattcaata       180
     aggttggaga gtaggctgaa accaaaataa aaaccatact ttatcagtag gctcaaccaa       240
     atagggtact gagtaggctg aaaagttaat tggcaaaatg gctgcctgta aatttgagca       300
     catggcggtg gttcaagaga agaaaaattg gttcagtagg ctattcaata aaattggata       360
     gtaggctgaa accatggaaa gtaacacagc aaaataccgt ctgcgagctt gagcacatgg       420
     cgatcatgtg ataatccaat tccaggaaaa ggagtaatgg ttcagtaggc tattcaattt       480
     aattgaaaag taggctgaga ccataacaaa acactatcag taggctcggc catataaggt       540
     tctgagtagg ctgaaaagtt aatttacaaa atggctttga tgcgataata taatttcaag       600
     agaaggaaaa ctggttcagt aggctattca atgaaattga atagtaggct gaaaccatga       660
     aaaaaaacct caaccaaacg gagcactgga gcatcaaacg gctgaaaagt aacaaagtgg       720
     ctaatttgca gtaggctcac tgtctgtaaa actactgttt attgaacaca attcaatatt       780
     cgaagatatt taaatcgact tactaatcta gtaagtatgc taaccatact aagaaaccat       840
     tcgtgcgcaa tatagtaggc tcatttatcg gtaagataga taaagttgaa tgtggattgg       900
     ctatccgaat tatgagcatg atcggtaata atgccaagga ataaagaaaa taagtagaat       960
     gaacaaattc aataaaaaat gcagatcagt tgtggttatt ataaacttac gagaaggtgt      1020
     caattctatg ataaagaatt tagtaaattg tgttgcacct ttgaagaatg atcagtacga      1080
     gtaattgaac tatcattttt tgattttcag ggttgcgtca acaaaccaga gaaagaaaaa      1140
     gatggaattc aacgatcgga gttcagtagc tgtaaaacgc aagaaagcat tactagttcg      1200
     caatcgttcg acaaaaagtg ttcaatccaa aaagcaaact ttgcgtaccg gattcatgga      1260
     acggcaacgc attgcaaaat tggagaagga actggaagaa gaaaaacttc gcaactctct      1320
     gttggtcgac gaaatgaaca aaattcgcca gaaccaggag gtgaataacg gatcttgtat      1380
     tgagacacaa tcggcagata ctggtagaga agtcgtcgaa cagagttcaa ttgattttga      1440
     aggaatagga ccgtcaagta cccgacgctc aaaagacatg tcgagtttgg aggaatccaa      1500
     attcatggct tctatcaatc agctgtcggt ctcatcgata agcgtgcccg aatgccggcc      1560
     agcagttgaa aacgaagaca tcagccgaca cactttcgaa cagtggcgcg atctgctgat      1620
     tgacacaatg tcactagctg gcattacaga tgaagctaca aaattcacaa tattcaaagt      1680
     caaggcagga tttcggctgc tcgatatcta tcgtaatgct aaagcagatg aaaacgcgcc      1740
     ggacgcaact ttgtttccat tcacgcatgc tttgtatcga ctcaaagctt atttcggatc      1800
     aggtaacatg atacttcatg aatattgcga acaaaaatgt gattattggt ttatttcgat      1860
     taggctcaga tattatgttg cagcggcgtc ggctagccct aatggaacag aaggtcggtg      1920
     aatcggattt ggcattcgtg acacgcgtcg gttcggctgc cagactttgc gattacggca      1980
     aggacaagga acttgaggaa actgttggta caattgctga gcatgcccat agcaaggaag      2040
     tccgcacgat ggctttgaaa cttttgagca ggaatggtac ctttaccgac ttggtggaca      2100
     aggttaggga aattgaggcc atccgattga acgaacagtt ttttgcccag aaacattcct      2160
     tgaaggatga agttgtggta gccccggtaa gagccgactt tcctttgaga agtaatgctc      2220
     agcagaggta tcaaggcaga acggtcactc aacgaggcta tcgtggacat ccagccgcag      2280
     caaggcgacc ggcaaatcaa ggcttccaga gatcaggaat gagaccaggc tccaatccac      2340
     cacgaagatt tgtcgcgcca cagtacaata aatgttggag gtgtaccagc gtgtaccatg      2400
     tccctgctaa gtgccatgcc atcaacaaag actgcagaaa ctgtggacgg cttggccaca      2460
     ttcaggtggc atgtccctca atcaaaacgt tcaatccgaa cagctcgaca gttccggagc      2520
     cagaggcgga gcctgctcgg caaattattg cagttgtcga aaaacgcgaa gaggccacgc      2580
     cgcaggaagt aagtgagaat cttgattttt ctaccgaacg ccaggattga gtttgattag      2640
     ttgaacgttt cgagaccagt ctgatcatta ttttatgtat tgtattcctt taattcggat      2700
     atccatacag gaatctgaaa acaaacaaaa cagttaaatt tatcattaaa taccttgtca      2760
     agcaaatact actctaagat tgtcataagc ttaaggatac tctctttcga actaacgaat      2820
     gaatttgaat ttgaatgatt cttgaatcaa agtgcaaata aacgataata acgactattc      2880
     aatctcatta cattgacaga tgacactgcc aacgcaaaac atttctacga ttgctatgat      2940
     tgcgtccgat aatgacgatg gtttcattgt ggcaacagta gcagggatgc catgtcgttt      3000
     ctgaattgac tcaggagcgc aagtcaatac cttcacggtg gacatgttta gtactttgat      3060
     ggcagatgag acttaccgta gggaagtttt caacgtcaaa caagggacgg atcgttctct      3120
     gaagggatat gcatcgagca gcacaattca tgtggcggct actttcgaag cctatatgtt      3180
     cataactaat gataggccta tgcttctgga gaaattttac gtagtaaacg aacgtcaagc      3240
     actgttgggt agatttacag cggcaaggta cagcattctg atgctcggcg ttaaagttcc      3300
     tttgactaca gctttaaagg ttgattcgtc atcgacgcgt ggagaagtgg ctaccatcga      3360
     catatacgaa aagtttccca aattcaatgt gccaccggtt cgaatcgagt atgacaaatc      3420
     gaagcctcca tgccgtaacg tttttatgaa catacctcag gcagttaaac cactcgtgga      3480
     ggatcgactg cgcaagttgg aaatgactga cataatcgaa cgtgtgactg acgatatgga      3540
     cgcatccttc tgttcctcga tgctggtggt accaaaaggg aaggacgata ttagactggt      3600
     gatagatctc agaggaccga atcgttacgt gtacaggtca ccatttgcag cacccaccct      3660
     agaaggaatc ttagccgaac tgcacggtgc gaagtggttc tcaactatcg atttgagtaa      3720
     cgcattcttc cacattgagc tggatcgcga gtcacgccac ttgacaaatt tttgtactga      3780
     atttggtatg ttcagatttg tccgccttcc gttcggtttg tgtaacgcac cggacgtgtt      3840
     tcaggaaaca ttgcagcgga aaatactcgg taattgcaag ggcgtaaaga attatcaaga      3900
     tgacgtactg gttttcggaa aaacgaagga agagcacgat gagaacttag aagcagtatt      3960
     ggacaggcta agaaatcata acgtgaagct gaatgaatcg aaatgcgtgt ttgctagtca      4020
     aacagtaaca tttctcggat ttaccataac tccagacgga tggaaaatcg aagagggaaa      4080
     gttagacgct attgaaaact gccgacgacc agaaacttgt tcagaagtca aaagctttct      4140
     cggtctcata acgttcgtgg attgctttat cccaaatcga gcagatttga cccagtatct      4200
     gagagctttg gcgaatgctg acaagttcta ctggtccgat aacgaagagc aggaattcca      4260
     attcctgaga acaagggcac tgaaaaccat taaaacgcta ggctattaca gccagacaga      4320
     tcccattgaa ctttacgtcg acgcttctcc ggttggactg ggagccgtct tagttcaaca      4380
     tgataaggac aagacagcac gaattattgc gtgcgcctcc aagtctctga ctgcaactga      4440
     gaagaggtat cctcagactc acaaagaagc actcgcggtg gtctggggcg tagagcgctt      4500
     ctctacgtat cttctgagca gatattttgt tatcagaacg gacgctgaag caaatcaatt      4560
     cattttcaac ggcacgcatc gtttgggaaa gcgagcacta tcaagggcgg atgcatgggc      4620
     cctccgtcta caatcattcg acttctccat ttcgaggata ccaagtaata tgaacatcgc      4680
     ggatgccttg tcaagactca tcgaacagac acaggaccca attccagttg acgttgacga      4740
     cgagaaccat ttcttgtatg cgctcgatgt gggatacatg aatataacat gggatgaaat      4800
     tgaacgacat tcagaagaag atccggaact gaagaatgta cagagtgctc tgcggtgcaa      4860
     cttctggcct cctgatttgc ggaagtacga agcccaacgc aaaaacctaa ggtttttagg      4920
     atttctcctg ttcaaggacg accgggctgt tttaccagaa tcgcttcgac agatggccct      4980
     tcaatcggct cacggtgggc atgttggaat cgtcgctatg aaaaagattt tgagacaatt      5040
     tttctggtgg ccaggaatgt caactgccgt tgagcggttc gtcaaaggat gtgaagtgtg      5100
     tatgcagcta gctaagaaaa atcctcctat tcccctatcg agcagggtcc taccggaagg      5160
     gccctgggag atacttcaaa ttgatttttt gaaagtacca ggattcggaa caggagagtt      5220
     tcttgtagtc gtagatacgt actcaagata cttaaatgtg gttgagatga agcaaacaga      5280
     cgctgataca acaaatgccg cgctacatgg agttttcaag cactggggat ttccattaac      5340
     aatccaaagt gacaacggac ctccgtttca aagcgcaaat tttacgaaac attgggaaaa      5400
     caaaggtgtc aaggtgcgta aggcgatacc gttgtgccct caaactaacg gtgccgtgga      5460
     aagacaaaat ccgggcatca taaaagcgtt ggcagcttca aagctagagg gatctaactg      5520
     gcgtcacgct ttggaaacat acgttcatca tcgaaacacc ctagttcctc attccaggtt      5580
     ggggatcact ccctttgagt tgatggtcgg gtggagatac aggggaacct tcactagctt      5640
     gtggaatcca tccagcacag atctagaccg aacagatgtt cgcgagctag atgatgatgc      5700
     aaaattgaaa agcaagaagg acgcggatca atatcgtaat gctagatagt ccgatatcaa      5760
     agtcggagat atggtacttc tagcacaaca caaacggagc aaagccgatc caaatttttc      5820
     cgaggagcgt ttccaggtta ttgctagaga tggggcaaag gtggtgttgg tgagcccaaa      5880
     tggaatccaa tattctcgca gcgtgaatga catgaaaaaa gcagcgatgt cttgttcggc      5940
     atcgacattg cacaaatcct caagtaacca gcaggttcag atacaaaatg cagacggact      6000
     actggagctc cctgtgatgg acaatttcaa tgatgcatcg agcgtatatg attctaattc      6060
     caggcgtaaa gaggatacag gtggcagatt tttgcgtcgt cgaaatgatt tgcagcgacc      6120
     agtccgattc gatgaaaact tcgtctacca cattttcggt tagattgcgt gataattcga      6180
     tactgcgtta acaggaacaa gtaagaacgc ctaaagagta gagaagaaga atga            6234
//
ID   Gypsy-214_AA-LTR repbase;    DNA;    INV; 532 BP.
XX
AC   supercont1.9;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-214_AA_;
KW   Gypsy-214_AA-I; Gypsy-214_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-532
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.9; Positions 1361236 1360705.
XX
SQ   Sequence 532 BP; 191 A; 81 C; 120 G; 140 T; 0 other;
     tgtagaatat agaactgtta aataaataca taaaaacgta cttacagctg aatttgatgc        60
     tcgtgataaa atcactttga aaaggtttac cctagcaacc agtttgtcca ctcaattcgt       120
     gatgggatca aaacaaactt aacatcgtaa aaaaaaagta aataagatta tagatgacgt       180
     ttctcacccc aatgaaaata atatgcatga ggttatagtg ctaccgggcc tgaacatttt       240
     ggctaccaat tctgaatgac ttttaaaaag ggcttaatac atggaagtga acagaaaatg       300
     gaccatatat gagtgtggat ttccggctaa ctaaatttac agaggagaaa gagaaggata       360
     gcgattgaag aaagcggaaa agggatagaa acaacgactt ggggtttgga tttgcgggaa       420
     cgggatgagg attcattctg gtgactaatt tcatagcgaa cggttcgttg tgatattttc       480
     gcgaattttt cgaagtgcgg aatgtcggaa aaagcagacc tcggacacta ca               532
//
ID   Gypsy-215_AA-I repbase;    DNA;    INV; 6343 BP.
XX
AC   AAGE02027318;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-215_AA_;
KW   Gypsy-215_AA-LTR; Gypsy-215_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6343
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027318; Positions   28978   22636.
XX
CC   Positions [3605-4114] - Reverse transcriptase
CC   Positions [5307-5780] - Integrase core
CC   'CGGAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2039..3889
FT                 /product="Gypsy-215_AA-I_1p"
FT                 /translation="MDLVRPVKPFDAKVDQSQLASEWRRWKRSLEYCLEAQ
FT                 GVITQREKRNQLLHLGGPDLQDIFDSLPEVNSVPHVSPDPPFYDVAIEQLD
FT                 AHFQPSRRRTYERHIFRQISQQQGERFNDFVMKLRVQANRCDFDQEGTSVL
FT                 ESMIIDQIAEKCTSSALRKKILEKDRPLSEVVAIGKTIEEVEMQCKELAQP
FT                 SEREHPTISVNKVQQYRPRQQNSYSMQPDWSFYPSKERGHQFPRTQQYAFR
FT                 RDQRFNAKGNWSGPPNGRFRQQHFSAHQNDNDNRLCFACGRRGHVKDSPKC
FT                 VAKNAECLQCKRIGHFAKWCTKRPYQEANFGSNGGLSTPPAKRIKMVHESD
FT                 KTNKPEENMDEICYVMGQNVFRFKVGGVEIPMAIDSGAAANLIDLATWTQL
FT                 EQSNARVSFQPNVDRTFKAYGTEKALQLTGMFTAKIEAGGNSTEATFYIAK
FT                 DGRQCLLGDDTAKKLKVLKIGYNIGAVREHVKAFPKIKGVVVEIPINSNIP
FT                 PVQQPYRRVPFTLEDKIAQKLGNLLDLDIIERVQQPSAWVSPVVPILKDSG
FT                 EIRLCVDMRRANQAVLRETHPFPIVEELFAGMKGAQRFSKLDIKEAYHQVE
FT                 ISERSREITTFITKQGLFR"
FT   CDS           3993..6101
FT                 /product="Gypsy-215_AA-I_2p"
FT                 /translation="MFGISCAPELFQKVMESIVTGLPGVVVYLDDLLVTGN
FT                 SQEEHDERLKRLLDRLASFGILLNNDKCIYNATRLEFLGYELSPEGVRPKE
FT                 SRIAAIQSFREPKNTSELRSFLGLVTYVGRFIPNLAEKTDTIRSLLRSGER
FT                 FVWNEYHQRCFEEIKQAVCNSSCLGYYNPKDLCIVIADASPTGLGAVLLQQ
FT                 DEYKRIRVIAFASKTLTDLERKYCQTEREALGLVWAVDKFQLYLLGTRFKL
FT                 VTDCKPLLYLFKERAKPCARIERWVLRLQCYRYEVEYKPGSENLADDISRL
FT                 AKSTPTEFDVASEACIYQIAMTDIPDAVTVQEVETESSKDDEIQSVFRSLD
FT                 TGIWEGSSRQFKPFNTELCKVGHLLLRGDRLVIPNNLRARTLKVAHESHPG
FT                 IEIMKRRLRLKVWWPHLDKDVEKYVRQCKACTLVSALDPPMPIHCTKMPDR
FT                 AWVDLAADFLGPLPSGHSLLVIIDYFSRFTEIIVMKQTTATLTVRALHETF
FT                 CRFGFPESLKTDNGPQFISSEFQRFCSQFGIDHRKTTPYWPQANGEVERMN
FT                 RTIVKRLKISQETDGSDWQWDLRMFALMQNSTPHSTTGVAPSILMFGRVLK
FT                 DKIPGMIIKGDKIVEEIRDRDTEKKHKGAEYADAKRSAGYRSLEVGDSVVA
FT                 KRIQKDNKLSTNFHPEELIVIGKTGSDVTLKSQDSGRVFHRNISHLKKLHT
FT                 GEV"
XX
SQ   Sequence 6343 BP; 2139 A; 1101 C; 1469 G; 1634 T; 0 other;
     ttggcgtcga gttgaaacaa agttttattt cgattacgag cgaacccttg taacaagaag        60
     taagttagaa aaaaattaaa acggaaaagt atttgcgacg gtcgtttctg cggtgatagt       120
     tttgcttttt ccaaaagaag aactgtgagt gattgttgag aagcggaacg catagcaaag       180
     tgtctttacg ttgataagaa ggattaattt aaaagcaaac cattaaaaag tgttcaaata       240
     tatttttcat gtattaaaaa aaaaagtgtt ggtcgtgcaa gtgccagaaa acaaaaatat       300
     aaacgaaaaa aatcacaaga tttaatatat ttccaatatg gcgtcgtttt ctggatgtga       360
     agcgaaaaaa aagagtgaga gggaagataa ccatatcggc gttactaaca accaacgcca       420
     cgggttcaaa gtgtgtatgt aaaagtggag cgatatcata gcgatagttg tgtcaagctt       480
     ttgtgatgtg tatgcgtgaa cgggtggtaa tggagagaaa aaaaatgttg agaaagagat       540
     gtttaccttg aaaaaaaaaa aaaatccatg caaagcataa acaaatatca tcggatactg       600
     aaggttggcg ttgatgtgta ttgaacggaa aataaaagtt atttgtatag ttctggtaaa       660
     agggttggtt agtgttaaaa gtattgcggc gtgtgaagaa tataggtatt caagtggaca       720
     gtacatgcga tatggaagga gcggagctgt gaagtagtgt tgatgatcgc gaattgaaag       780
     aagaccagat agtgttatgt tgccgaatgc tgaaggtcaa agtatgtgtc agatgaatat       840
     ataggtggat aagctgtatg agtgagaaaa ccgtgaatct agtgaatgat aagttggtag       900
     tgtgtgcgta tgtcaatgag ttgattgaag aacgatcttc accagacagt ggaagtggat       960
     tgatgtcttc atcttggtaa gtcaggaatg cgcaacattt gaaaagtttt ccacagccgg      1020
     gaagcaagct gagcaatgag catgatgcgt cgaagtaccg taagtacaca aaatcatgga      1080
     caaaaaaaaa aaatgaagag aataaataaa tgtgccatat atcttttttt tatttacgat      1140
     aagagataaa ttttttgaac tcattcgcat ccatttattg ggaacagtta atgtgaaaag      1200
     acagtactgt tcgacttaat ttattaatta tctcatgatt tgttttgatg atatacaagt      1260
     ttatacatgg aagactatag catttttttt atattcttag aaaaggggtg ttgtcttttc      1320
     agcagagcac agccttttga ttcgttgatt tacgtttagt gagttataaa tggaggatga      1380
     agtcataatc catgaaaaga ataaaatggt tcaataaaaa gaaaagacga tttttgacat      1440
     cggtattttg tgttaatcaa gaatgaaacg ggctgagagc cggattcgaa tttaaagtta      1500
     tacaaacgtg agaaattgag gtgttaaaca gaacaaagta tgtaaagatt gaaatgagct      1560
     gtaagctgga ttctttcaag agagctggtt atatatgtaa aatgagctgt gagccagatt      1620
     tgtattgttt atgaaggatt atctgattga aaagggtgaa tgccagatgc gtcgtgtaaa      1680
     taccgttaaa aaaatgatga atgaaagtga aacggatgtt tggacatggt actaactgag      1740
     ttcaatttgc aaggcataga ataacattag cgaaaaaaaa taaatgtgaa agtgtgaaac      1800
     gagctgtaag ctggatgttg taacattatt gtttgaacag gatgcattaa gaagttgatc      1860
     taggtgaaat gagctgtaag ctggattcac agtattttaa aaagagtaat ttgggttcca      1920
     gaagattaat tgaatagaat gctagaataa tttaaccaat gcacaaaaac aaaacaccac      1980
     agaaattgac aagaaaaaaa aataaattaa cttaattcat gataattgat tcataggaat      2040
     ggatttagtg cgaccggtta aaccgttcga tgcaaaagtg gaccagtctc agctcgcttc      2100
     agaatggaga aggtggaagc gtagcttgga gtactgtttg gaagctcagg gagtgatcac      2160
     tcagcgagaa aagcgaaatc agctccttca tttgggagga ccggatcttc aggatatttt      2220
     tgacagcctt ccggaggtga atagcgtgcc ccatgtctca cctgaccctc cgttctatga      2280
     cgtagccatt gagcaactgg atgcgcattt ccaaccgtct cgtaggcgta cgtatgaacg      2340
     ccatatcttt cgccaaattt cacaacagca aggtgaaaga ttcaacgatt ttgtcatgaa      2400
     actgcgggta caggccaatc gatgtgattt cgaccaggaa ggaacctcgg tgttggagag      2460
     tatgatcatt gatcaaatag cggagaaatg tacttcctcg gctttgcgga aaaaaatctt      2520
     agaaaaagat cgcccactca gcgaggttgt ggctattggt aaaaccattg aagaagtcga      2580
     aatgcaatgt aaggaactgg cacaacccag cgaacgtgaa catcccacaa tttctgtgaa      2640
     taaggtgcaa caatacagac ctcgccagca aaattcatat tcgatgcaac ctgattggtc      2700
     cttctaccca tctaaggagc gtgggcacca gtttcctcga actcagcagt atgctttccg      2760
     acgtgaccag cgattcaatg ctaagggtaa ctggtctgga ccaccaaacg gccgtttccg      2820
     ccaacaacat ttttcagctc atcaaaacga taacgacaac agactttgct tcgcctgtgg      2880
     ccgtcgagga cacgtaaaag atagtccaaa gtgtgtggcc aaaaatgctg agtgtctgca      2940
     atgcaaacgc attggtcatt ttgccaaatg gtgcactaaa agaccatacc aagaagcgaa      3000
     ttttggatcg aatggtggct tgtctacgcc accagcaaaa agaataaaga tggtacatga      3060
     aagcgataag accaataagc cagaagaaaa catggacgaa atttgttacg tcatgggaca      3120
     gaacgtcttt cggttcaaag tcggtggtgt tgaaattcct atggccatag attccggagc      3180
     agcagcgaat ctcatcgatc tggctacctg gacacaattg gaacaatcaa acgcaagagt      3240
     tagcttccaa ccgaatgtag atcggacatt caaggcttat ggaacagaaa aagcactcca      3300
     attgacagga atgtttacag ccaaaatcga agcgggggga aatagtaccg aagcaacgtt      3360
     ttacatcgca aaggacggtc gacaatgtct acttggagac gacacagcga agaagctaaa      3420
     ggtattgaaa attggataca acatcggtgc agtcagagaa cacgtgaagg cctttcccaa      3480
     aataaaagga gtagtggttg aaattccaat aaacagcaac ataccaccag ttcagcaacc      3540
     ttaccggcgt gttccattca ctttggagga caagatcgca caaaagcttg gaaatctact      3600
     cgatctagac attatcgaac gggtacaaca gccgtctgct tgggtttctc cggtagtacc      3660
     aatcttgaag gattcgggag agattagact ctgcgttgat atgagacgag cgaaccaagc      3720
     agtacttcgg gagacacacc cattcccaat cgtagaggag cttttcgcag gaatgaaagg      3780
     ggcacagcga ttttctaagc tagatattaa agaggcctac catcaagtgg agatatcgga      3840
     gcgatccagg gaaattacta cgtttattac gaagcaggga ttattccggt aaagattctt      3900
     tataagatat tttcgatgaa aaaatgaata acgaataaag aaaaacaaaa acaaaaaaaa      3960
     atctattttc tctcaccaga tacaaaagat taatgttcgg aatatcatgt gctcctgaac      4020
     ttttccaaaa agttatggag tctattgtaa caggtttgcc aggagttgtt gtatatttgg      4080
     atgatttgtt agtcacagga aacagtcaag aagaacacga tgagagactg aaacgcttgc      4140
     tcgatcgtct agcttctttc gggattttgc taaataacga caagtgcatc tacaacgcaa      4200
     ctcgcttaga attcttagga tatgaattat cacccgaagg cgtacgtcca aaagaaagtc      4260
     ggattgcagc catacaatct tttcgagaac ctaaaaatac atcagagctc cgcagctttt      4320
     tgggactagt gacctatgtg ggtcggttta taccaaatct cgccgaaaaa actgacacga      4380
     tcagaagttt actgcgttcg ggagagcgtt tcgtctggaa tgaataccat caacgatgtt      4440
     ttgaagaaat caaacaggca gtttgtaatt cgagttgtct aggctattac aatcctaaag      4500
     atctctgtat tgtaatcgca gatgcaagtc caactggtct tggagcagtg cttttgcagc      4560
     aagatgagta caaacgcata cgggtcattg cgttcgctag taagacattg acggatttgg      4620
     agagaaagta ttgccaaaca gaacgagaag ctttaggact cgtttgggct gtggataagt      4680
     tccagttata tcttttagga actcggttca aactagtaac cgactgtaag cctctgttat      4740
     atttgttcaa agaacgagct aagccatgtg caagaattga gaggtgggtg ttgcgactac      4800
     aatgctatcg ttatgaagta gaatataaac ccggatcaga aaacttagct gacgatatct      4860
     ctaggctggc caagtcaact cccacggaat ttgacgtagc aagtgaagcg tgcatatacc      4920
     aaatagctat gacagatata ccggatgcag ttactgtgca agaagtagaa actgaatctt      4980
     caaaggacga cgaaattcaa agtgtttttc ggagtttgga tacagggatt tgggaaggca      5040
     gctcacgaca attcaaacca ttcaatacgg aactatgtaa agttggacac ctactactac      5100
     gtggcgatag attggttata cctaataatc tcagggcaag aactttgaaa gttgcccacg      5160
     agtcacaccc cggaatcgag attatgaaaa ggcggttaag attaaaggtc tggtggccac      5220
     atttagataa ggatgtagaa aaatacgtga gacagtgcaa agcctgcaca ttagtttcag      5280
     cgctcgatcc acctatgcct attcattgca ctaagatgcc agatcgagct tgggtagact      5340
     tagcagcgga ttttctaggc cctctaccat ccggtcacag ccttctggta atcattgatt      5400
     atttcagccg attcaccgag attattgtca tgaagcagac aaccgcaact ctaaccgttc      5460
     gagcattgca cgaaacattt tgccgtttcg ggtttccaga atcactgaaa acagataatg      5520
     gaccgcaatt catcagctca gagttccagc ggttttgtag tcaatttgga atcgatcaca      5580
     gaaagaccac tccgtattgg cctcaagcaa acggggaagt tgaacgtatg aaccgcacaa      5640
     ttgtgaagcg tttgaaaatc agccaggaga cggatgggtc tgattggcaa tgggatttga      5700
     gaatgttcgc gctcatgcaa aattcgaccc cacattcaac caccggagtg gcaccctcga      5760
     ttcttatgtt cggacgagtc ctaaaagata aaattccggg aatgataatt aaaggagaca      5820
     aaattgtgga agaaatccga gatcgcgaca ccgagaagaa acacaaagga gcagaatatg      5880
     cagatgcaaa acgatcagca ggttaccgca gcctagaagt tggagattct gtagtggcca      5940
     aacgcatcca gaaggataat aaactgtcaa caaatttcca tccagaggaa ttgatagtga      6000
     ttggtaagac aggatcagat gtgactttaa aatcacagga ctccggacgt gtttttcata      6060
     gaaacatttc ccacttaaaa aagttacata caggtgaagt ataagtaaat agaggatact      6120
     tagaaatata aaaatttgaa ataataatta ttttcaggta atggatacac gaccaatata      6180
     gaaccaaatc cgatggatgg cgatgttagc caaggttgtc ctaaggtttc agatgatacg      6240
     agcgagagca ttaacctacg gccacgacga gaagtgaaac gaccggcaca tttaaatgac      6300
     tataagatta acgaattttc tttgttttaa agtaagagag gga                        6343
//
ID   Gypsy-215_AA-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   AAGE02027318;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-215_AA_;
KW   Gypsy-215_AA-I; Gypsy-215_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-181
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027318; Positions   22635   22455.
XX
SQ   Sequence 181 BP; 55 A; 39 C; 32 G; 55 T; 0 other;
     tgtagtattg tagaacacct tcatatataa ataccttgaa atggcattga gtattctagc        60
     aacactgtca aagactacct tctatgcgac cgttacgtta tgggattaaa ggagttttct       120
     tcataccagc acctgagaca gacgcgttct ctgttctagt ccgaaagact caaattctac       180
     a                                                                       181
//
ID   Gypsy-216_AA-I repbase;    DNA;    INV; 4306 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   22-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-216_AA_;
KW   Gypsy-216_AA-LTR; Gypsy-216_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4306
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1035-1035 (2011).
XX
RN   [2]
RP   1-4306
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4267
FT                 /product="Gypsy-216_AA-I_1p"
FT                 /translation="MTMPITRSMAARQTESAVNDEKFYDVKSEDKADKKKP
FT                 DGGSIQRNNTEVQQNPTFAPHPQDLGRLIPEFSEGDGVIKWLRRIDHFRII
FT                 YGWTEQMCLLYATTRLSGAASSWYRRQEENIFTWIQFKEQLVAAFPETYDE
FT                 ADIHRQLEAAKILKGESYESFVYRVDALAQKGDFSTSATLKYIIKGLRDDK
FT                 VYGSLLSRQYSSTLELIRHIKWVAANLDMVPVITGAPRMPKAGGGSPPSFP
FT                 GKDLLCFNCREQGHKSIDCPKPPRRERCARCQKVGHSSDKCLVANTTQAGT
FT                 RASKSSSTNALFNNGDSEGIIVDASSQVDVDIDVAQDRFRTLALIDSGSYA
FT                 NLIKRKHVQGKIAFKDVNEDVIGINNVKVEVLGEIYTYVYLGGNKFRARFL
FT                 VVSDNTMKVGVILGRHFLCENRIRCIKFSTNDNFACSNRGSDWAVFEGMDD
FT                 SCMLSASSAIELDVGDDETTRRYKGTLESLLKRSYFDRPKASVPPVPYKAE
FT                 IRLKEDKVFTASSQRLSVFEKRELDKIVEDLLEQRIIRESESPYTSRVVLT
FT                 KKKNNSYRMCINXKPLNKISERIHFPMPIIEDQIMLLQGKRFFTSLDLKNG
FT                 FYHVELEEESKKYTSFVTDSGQYEFNRLPFGYSNSPAIFVKYITKVLSPFI
FT                 RDGRIIVFIDDILIASNNIEDHLQTIKEVLETLADNGLELQLTKCQFVKTC
FT                 IEFLGYDVKFNSIQPSDRHIQSVRDFPIPTDKKSLQRFLGLVNYFRKFIDG
FT                 FNVQAAPLYELLKEGNDFSMTKQHVNAVESLKRALISKPVLRIYSPTAETE
FT                 LHTDASSAGFGGVLLQRQADDGLLHPVMYHSRKTTPAESRLHSFELETLAI
FT                 VYCLQRFRTYLFGLSFKVVTDCSSLKHTLQKKDVNPKIARWALYLEQFDFE
FT                 VIHRPGLRMQHADALSRVNVCLIEEDQCSSTLFENALYVSQLRDPEVAKLK
FT                 RAVELGTLKDYEIRDAILYKVVGVKSLLYVPADMIPSVINKFHNDMGHFGV
FT                 DKVCNLIKRTYWFPKMRDQVQNHAKACITCIAYNPRNKRYDGHLSTVEKPT
FT                 VPFEILHVDHLGPLEKGKGKNEYILAVVDAFSKFIKLYATKTTKTSEVMKS
FT                 LKNYFHVYSTPRVMISDRGSAFTSDAFGKFVEDHGFKHIKVATACPKANGQ
FT                 VERYNKTMLPLISKLVEESGNSWDSVLSDAEFLLNNTVNRATGCTPSTLLF
FT                 GVDQRRRIVHDLTDYLQNMENPDERDLIKVRETAGEQMKKQSNYNKRTHDR
FT                 HCRRNTNYEMGDLVMLRRVNVVGDRNKLKPKFRGPYEVKKVLNRNRYVVGD
FT                 IEGYQVSGKRFEGIFDPLNMRLYQKVNCPKEEKVEDEESDVEYQDIEYLNE
FT                 EEVNLGSDVEYEDVEYLDEAIEV"
XX
SQ   Sequence 4306 BP; 1319 A; 791 C; 1028 G; 1167 T; 1 other;
     gttttcagaa gtgggatcct cttggtcctg tcggaaacta cttcggacct tggaacgtgc        60
     tggtgacgat acatccgacg ttggtggaga cgattttccg gtttgttcca tgacgatgcc       120
     gataacgaga agtatggctg cccggcagac ggaaagcgct gtgaacgacg agaagtttta       180
     cgatgtgaaa agcgaagaca aagctgataa gaagaagcca gatggtggat ccatccaacg       240
     aaataacacc gaagttcaac agaacccaac ttttgctcca catccgcaag atttgggaag       300
     attgataccg gaattttccg aaggagatgg agttattaaa tggctgcgcc ggattgacca       360
     ctttaggata atctacggct ggacagagca aatgtgtttg ttgtatgcta cgacgcgtct       420
     gtctggagcc gcatcaagct ggtatcgcag acaggaggag aatatcttca cgtggattca       480
     gttcaaagag caacttgtcg ctgcatttcc tgagacatat gatgaagcag atatacaccg       540
     tcaattggaa gcagccaaga tattgaaagg agagtcctac gaatcatttg tttacagagt       600
     cgacgctctc gctcaaaaag gagatttcag cacttctgct actttgaaat acattatcaa       660
     agggttgcgc gatgataagg tgtacggcag ccttctatct cgacagtatt cgtcaacatt       720
     ggagctaata cgacacatca aatgggtggc agcgaacttg gacatggttc cggttatcac       780
     cggtgctcca cggatgccaa aggccggtgg cggatcgcca ccaagcttcc cgggaaagga       840
     tcttctgtgt ttcaactgtc gtgagcaggg acataagtca attgattgtc ctaagccgcc       900
     tcgtcgagag cgatgtgcca gatgccagaa agtaggacac tcgtctgaca agtgcttagt       960
     ggcgaacaca acgcaggcag gaacaagagc atcgaagtcg agttcaacga atgccctctt      1020
     caacaacggt gacagtgagg gtatcattgt cgatgcatca tcacaggtgg acgtggacat      1080
     cgacgtagct caggaccgtt tccgcacctt ggcgctgatt gattcaggta gttatgcaaa      1140
     tttgatcaag cgtaagcatg tacagggcaa gatagcattt aaagatgtaa atgaggacgt      1200
     tattggtata aataatgtta aggtagaggt attgggtgaa atttacacgt atgtttattt      1260
     gggtggcaat aaatttaggg caagattttt agttgtatca gataatacaa tgaaagtggg      1320
     agttatttta ggcaggcact ttctgtgtga gaatcgtata cgatgcatca aattttctac      1380
     gaacgataat tttgcgtgtt ctaaccgagg ttctgactgg gcggtgttcg agggtatgga      1440
     tgattcatgt atgttgagtg cgagctctgc tattgagttg gatgtaggag acgatgagac      1500
     aactcgtcgg tataagggta ctttggagtc tttgttgaag cgtagctatt ttgatagacc      1560
     gaaagcgagt gttcctccag tgccgtacaa agcagaaata cgtttaaaag aagacaaagt      1620
     tttcacagcc tcatcccagc gacttagtgt ttttgagaag agagaattgg acaaaattgt      1680
     tgaagactta cttgaacaga gaatcattag ggaaagtgaa tcaccgtaca cttctcgtgt      1740
     ggtgctgaca aagaagaaaa ataacagtta ccgaatgtgt atcaactwta agccactcaa      1800
     taagatttct gaacgaatcc acttcccgat gccgattatt gaagatcaaa tcatgctgtt      1860
     gcaaggtaaa cgcttcttca catctttgga tttgaaaaac ggattttatc atgtggagct      1920
     tgaagaggaa agtaagaagt atacttcgtt cgtgaccgat agcggacagt atgagtttaa      1980
     ccgattgccc ttcggatact caaattctcc agctattttc gtcaaataca taacaaaagt      2040
     tctatcgcct ttcattcgcg atggacgaat aattgtcttc atagatgaca tattaatagc      2100
     atcaaataat atcgaggacc atctacaaac gattaaggaa gttctggaga ctctcgctga      2160
     caacggtctt gaattgcagt taacaaaatg ccagtttgtt aaaacttgta tcgagttctt      2220
     gggttatgat gttaagttca attccattca gcctagtgat cggcatattc aatctgtacg      2280
     agatttccct ataccgacag ataagaaaag ccttcaaagg tttctgggac ttgtcaatta      2340
     ttttaggaaa tttattgacg ggttcaatgt gcaagctgca ccattgtacg agttgctgaa      2400
     ggaaggtaac gacttttcta tgacaaagca acatgttaac gcagtggaat cattgaagag      2460
     agcattaata tctaaacctg ttttgaggat atactctccg accgcggaaa ctgaattaca      2520
     tactgatgct tcatcggccg gttttggagg tgttttactt caacgacaag ctgatgatgg      2580
     attgctccat ccagtaatgt atcatagtcg taaaactaca cctgccgagt ccagattgca      2640
     tagtttcgaa ttagaaactt tggcaatcgt atactgctta cagcgttttc ggacttatct      2700
     attcggactc agttttaagg tagtgaccga ttgctcttca ttgaaacata ccctgcagaa      2760
     gaaagacgtc aatcccaaaa tagcgaggtg ggcgttatat ttggaacaat tcgattttga      2820
     agttattcat cgacctggtt tgaggatgca gcatgcggac gcgctatcaa gggtaaacgt      2880
     atgtctaatt gaggaggatc aatgttcttc aacccttttt gaaaatgcgc tgtatgtatc      2940
     acagttgaga gatcctgaag tggctaaact caaacgagcg gtcgaattag gtactttgaa      3000
     ggattacgaa attcgtgatg caattctcta caaagtagtt ggtgttaagt cgttactcta      3060
     cgttcctgca gacatgattc cctcagttat taacaaattt cataacgata tgggccactt      3120
     tggagttgac aaggtgtgta atttgattaa acgcacttat tggtttccga agatgcgaga      3180
     tcaagttcaa aaccatgcta aagcttgtat cacatgcata gcatacaatc ctcgaaataa      3240
     aagatacgat ggacatcttt ccacagttga aaaacctacg gttcctttcg aaatattgca      3300
     cgtggatcac ctgggaccac ttgagaaagg caagggaaaa aacgagtata ttttagctgt      3360
     cgtggatgcc ttttcaaaat ttatcaagtt atatgcaact aagactacga aaacatcaga      3420
     agtgatgaag tctttgaaaa attactttca tgtgtattca acacccagag ttatgatctc      3480
     cgacagaggg tctgccttca cttctgatgc gtttggaaaa tttgttgaag atcatggatt      3540
     caagcatatc aaagtggcta cagcgtgccc aaaggctaac ggacaagttg aacgatacaa      3600
     taaaaccatg ttgccactga tcagcaagct tgtcgaagaa tctggaaatt cctgggattc      3660
     agtgctaagt gatgccgaat ttctgttgaa taacacggtg aaccgagcaa cgggatgtac      3720
     cccgtctact ttactgtttg gtgtagatca acggaggcgc atcgtacacg atctgacaga      3780
     ctacttgcaa aacatggaaa atccagatga acgagatctc atcaaagtga gagaaacagc      3840
     tggtgaacaa atgaagaaac aatcgaacta taataaacgt actcatgatc gtcactgcag      3900
     aagaaacact aactatgaaa tgggtgactt agtaatgttg cgaagggtta atgttgttgg      3960
     ggacagaaat aaactcaaac caaaatttcg tggaccgtat gaagttaaga aagtgctcaa      4020
     tcggaatcgg tatgtggtgg gagatataga gggatatcaa gtgtcgggta aacgtttcga      4080
     aggtatattt gatccgttga atatgaggct ctaccagaaa gtgaactgcc caaaagagga      4140
     aaaagttgag gatgaggaat ctgacgtaga ataccaagat atagaatact tgaatgagga      4200
     agaagtaaat ctagggtcag atgtcgagta tgaagacgta gaatatttag atgaggccat      4260
     tgaagtataa gttttatttc agataattag tgcaggatgg ccgagc                     4306
//
ID   Gypsy-216_AA-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-216_AA_;
KW   Gypsy-216_AA-I; Gypsy-216_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-189
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1036-1036 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 189 BP; 54 A; 39 C; 38 G; 58 T; 0 other;
     tgtaagcata agacgagaaa ttgtaccacc ctattgctga tgagtcatgg atcaccctat        60
     tttgtgttag tttctccctc catgattgca tacgtgtcag ttgaattaga acgtaaagag       120
     aaaaaggtcg tacggaataa accatcgttg ttcagtaacc tgtgtttttc ctccggatca       180
     ttgaccaca                                                               189
//
ID   Gypsy-217_AA-I repbase;    DNA;    INV; 6503 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-217_AA_;
KW   Gypsy-217_AA-LTR; Gypsy-217_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6503
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1037-1037 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3158-3619] - Reverse transcriptase
CC   Positions [4640-5116] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           388..2112
FT                 /product="Gypsy-217_AA-I_1p"
FT                 /translation="MPPRVSVSGPDFSTLYRGMRVDYLSPEELNYELFLRN
FT                 IIIGDDQSCCKRRRRLKQIMKNEREGHEFIIHYDQDPEDDLKTCRYLFREH
FT                 EQTLSKSPSEQVKNTCKARLLHLGHRLAIVKNHAIGECKTQAIEAFRSVLD
FT                 LFSEHFWSDDAFYAETGGDSNEDDLLDEAVGGSDDPPQTFQAQYVTTEQFN
FT                 QAMTDVGSLIKALASQISGMREEIQKISQPAQPSNNNDTNPFRQPLERPGQ
FT                 LPPSSRGSWANPNADRPAVPPKVSFKKSTGFPESTTIGGDNLNNSFLRRLD
FT                 ELSFTSSVQDNPQRASNNAPTRVQYAPPALQAAPQRKVVPVSQWKIRKYSG
FT                 TDQGLGLNDFLSHIHQLAISEHASADDLFDSAIHLFDGAALSWYTARRNQN
FT                 TLFGWDHLLRELKYEFRHPDLDSVLRSKIYQTRQQKGESFQQFYLQIEKLF
FT                 QAMDYPITEQEKVEILKANLRYDCRKALIGRNIRTLEELIKIGKDLDATDF
FT                 SAFSKVFGTNKREACAITAGSSGSAGSRTFYSRNKPQEPKNVSDQFSKNFK
FT                 AGASGQKGSSNKSNNSQFDSKNMEKSPC"
FT   CDS           2771..5500
FT                 /product="Gypsy-217_AA-I_2p"
FT                 /translation="MDFWKIFGIYPAVASIATSSSEMPPSSESSKVDLTDN
FT                 QHQILNRTKKLFKVATAENLDTTYLYEHTITIKEEYKGSKPVRLYPYPIAP
FT                 KIQEGLFIELERMLDRGIIEESNSDWSLNIVPVRKPSGAIRLCLDARKLNE
FT                 RTVRDAYPLPHPGRILGRLPKARYLSTIDLSEAFLQIPLAQESRRYCAFSV
FT                 QGKGMFQFTRLPFGLINSPATLARLMNRVLGQGVLEPNVFVYLDDIVIVTE
FT                 TFEEHVRLLEEVARRLREANLSIKLEKSHFCLDEIPFLGYILSSQGLTVNP
FT                 EKIRPIVEYERPNTITKLRRFLGMSNYYRRFIADYSNTTSALSELLKTKSK
FT                 NLKWTPEAEEAFQDIKAKLITAPILTSPNFNNEFIVHTDASDYAIAGVLTQ
FT                 KVDGQERVIEYYSKKLATPERSYHATEKEGLAALLSIEHFRGYLEGSHFVL
FT                 VTDSSALTFIMRSKWKSSSRLSRWSLSLQMYDMTIVHRRGKDNVVPDALSR
FT                 SVMAVSVKSDCDWFNSLKQQVEDKPGEYPDFRLHNGQLLKYVFNDELADHR
FT                 FDWKIIPSPEARLDIIKASHDGQMHIGVDKTLGKIRQQFYWPNMFREVREY
FT                 VRKCSECRQIKPPNVSTTPLMGDMRQAFRPWQIIALDYIGPLPRTTCGKQY
FT                 ILVTMDLFSKWVQLRAFPQISAKSLCTELVDHWFFRNSVPAIVLTDNATTF
FT                 TSREFRNLLDRFEIQQWLTSRYHSQANPVERVNRGINTAIRSYARDNQRSW
FT                 DSRLSEIEVVINSTIHSSTGYSPFRVARGEEVILKGSEHSRVASEGETTLE
FT                 ERVARIKEQNPQLFALVQKNLVKAHATSTNTYNLRNRKPAKPFEVGNTVYK
FT                 RNTKLSNSNEYYNSKLGAQYVPCTVVARHGSSSYELVDAHGRNIGVWPAQL
FT                 LKAAGQ"
XX
SQ   Sequence 6503 BP; 1804 A; 1487 C; 1496 G; 1709 T; 7 other;
     atggcgccca acgtaaaagt aggaacaggt tcctaggaga gaaaaaatat tctcgaatat        60
     tttttcttca ctagtagtgg gggagtttca aatagcttaa tttgaaagtc actctggtca       120
     ggctagagac ggaaaaataa cgttttcttg ttgttcgcgt tttcaaagcc gcttggcgaa       180
     gtagaaaaac gttgtggaaa gcaacgcgag tgtgcatttt gcgtcacttc ggctatctga       240
     tactttctaa actaatcacc aatttctata ggcctctggg tgtttgaagt cgaagattag       300
     agttgtgagt tggggtttta acaaccaacg acagtagttt aaaagctccc attttgcatt       360
     tagtatcccg ttgcagattc cgttaaaatg ccacctcgcg tatccgtgtc cggtccggac       420
     tttagcaccc tttatagggg aatgagggta gactatttgt ctcccgaaga gctcaattac       480
     gagcttttct tacgaaacat tatcataggg gatgaccaat cgtgttgcaa acgtcgccgg       540
     cggttaaaac agataatgaa aaatgaacga gaaggtcatg agttcataat acattatgat       600
     caggatcctg aagacgatct taagacctgt cggtatctgt ttcgggaaca cgaacagact       660
     ctctctaaat ccccaagtga gcaggtgaaa aacacttgta aagctcgctt gttgcatttg       720
     ggacatcgac tcgcgattgt gaaaaatcac gcgatcggtg aatgtaagac acaagctatc       780
     gaagcatttc gcagtgtgct tgatcttttt tcggagcact tctggtccga tgatgcgttt       840
     tacgcggaga ccggtggcga ttccaatgag gacgacttgt tggacgaagc tgtcgggggt       900
     agcgatgacc caccacaaac ctttcaagcg caatacgtaa ctactgagca gttcaaccaa       960
     gcgatgactg atgttggaag tctaattaaa gctttggctt cccagatcag tggcatgagg      1020
     gaagagattc aaaagatttc tcaacccgcc cagccttcaa acaacaatga caccaatcct      1080
     ttccggcaac cgctcgagag accaggacaa cttccccctt cttccagggg aagttgggca      1140
     aatcctaatg cagacagacc tgcggttcct cctaaggtct cttttaaaaa gagtactggt      1200
     tttccggagt ctaccacaat tgggggagac aacttgaaca attctttcct acgtagattg      1260
     gatgaacttt ctttcacgtc ctctgttcaa gataacccgc aaagggcwag caataatgct      1320
     cccacaaggg tgcaatatgc tccgcccgct ctccaagcag ctccacagcg caaggtagta      1380
     ccggtgtctc aatggaagat tcgaaaatac tcaggaacag accaaggtct gggattgaat      1440
     gattttctgt ctcacattca tcagttggcc atatccgaac acgcctccgc cgatgattta      1500
     ttcgattcgg ccatccattt gttcgatggc gcagccctaa gctggtacac agctcggcgc      1560
     aaccaaaaca ctctttttgg ttgggatcat ttgcttcggg agctcaaata cgaattccga      1620
     catcccgatt tggactcagt actccgcagt aaaatttacc aaacgaggca acagaaaggc      1680
     gaatcgttcc agcaatttta tttgcagatc gagaagcttt tccaggcaat ggattatccg      1740
     atcacagagc aagaaaaggt ggagattctc aaagccaatc tacgctacga ttgtcgcaaa      1800
     gcgttgattg ggagaaatat tcgaactctt gaagagttaa tcaaaatcgg gaaggatttg      1860
     gatgccactg atttctccgc tttttcgaaa gtattcggta ccaacaaacg ggaagcttgt      1920
     gcgataaccg caggatccag tggttctgcg ggatctagaa cwttctactc gcggaataaa      1980
     cctcaagaac cgaagaacgt atctgatcag ttttcgaaaa acttcaaagc tggcgctagt      2040
     ggacaaaagg ggtcgtcgaa taagtcgaac aattcgcagt tcgattccaa gaacatggaa      2100
     aaaagtccat gtaamacctc aactccgaaa gaaacgtgtg ctggtccgag taagtcgagt      2160
     gcattactga aaatggtatc gaattaccgt cctccatcaa atgacgaatg tttcaattgt      2220
     ggagaagaac acgatttgtc agactgtccc atccctcgca gagtattttg cgatgcgtgt      2280
     ggctttaagg gctacacgag gagtaattgt ccgtactgtt taaaaaacca gatgcggaag      2340
     tcctaaagac gctggaactt ccgcaagcgc aaaacgaagc agatttcatc agctggctct      2400
     cggaactggg tcagttttat gagccacgtt cggatgaatc ggaggatgaa tctgtttctc      2460
     aacaaattca taaaattact cttgataaca gttacgatga tcgcccacat attaatatta      2520
     acgttttcga tactacagta acggcgcttc tcgactgcgg aagcatctta cttttattaa      2580
     ccgagctttg tacaacaaat ttcgacgagc taagatcagg gaaccttcaa cacmggtcga      2640
     actcagaacg gccgatggct cccgtctaga gattatcgga gaagtgctcc ttccctatac      2700
     attcaatggt aagacccgcg tgctaccaac tttggtggcg ccagcactga ccaagkaatg      2760
     tatctgtgga atggattttt ggaagatatt tgggatctat cccgcagtcg cttccattgc      2820
     tacttcctcg tcagagatgc ctccttcgtc ggaatcttct aaggttgacc ttaccgacaa      2880
     tcaacaccaa atcctaaatc gcaccaaaaa gcttttcaaa gtggccactg cggaaaactt      2940
     agacaccacc tacctttatg agcacaccat tactataaag gaggagtaca aaggctcaaa      3000
     acccgtgaga ttgtatccgt acccgattgc tccaaaaatc caggaaggac tcttcataga      3060
     actggaaagg atgcttgacc ggggtataat tgaagagtcg aactcagact ggtcattgaa      3120
     cattgttccg gttcgaaaac cttcaggggc tatacgtctt tgtcttgatg ctcgtaagct      3180
     caacgagcgg accgtacgtg acgcttatcc cctcccgcac cctggacgca tacttggccg      3240
     cttaccgaaa gcccgctacc tgtcgacaat cgacctttcg gaagcattcc tgcagattcc      3300
     attagcgcag gaatctcgtc ggtattgtgc gttcagtgtg caaggaaagg ggatgttcca      3360
     gttcacccgc cttcccttcg gcttgatcaa cagtcccgct acactggcac ggttgatgaa      3420
     ccgagtatta ggtcagggtg tgctggaacc gaatgtcttc gtctacttag acgatatcgt      3480
     tatagtaacg gagacattcg aagaacacgt acggttgctc gaagaggttg cgagacgtct      3540
     tcgggaggca aatttgtcaa ttaagctcga gaaatcacat ttttgcttag atgagatacc      3600
     gttcctcggc tacatcctgt cttctcaagg attaacggtt aatccagaaa agataaggcc      3660
     gatagtcgag tacgagcgtc cgaataccat tacgaagctt cgacgattct tggggatgtc      3720
     gaactattat cggcgattca tcgccgatta tagcaacaca acctcggccc tttctgaact      3780
     tctgaaaacg aagtccaaaa atttgaaatg gacccctgaa gccgaagagg cgttccaaga      3840
     catcaaagct aaattgatca ccgcccccat tttgaccagc ccaaacttca ataacgaatt      3900
     catagtccac acggacgcga gtgactacgc cattgctggc gttctcactc aaaaagtgga      3960
     cggacaggaa cgagtgattg aatattattc aaaaaagctc gcgacaccag aacggtcata      4020
     tcatgcgacc gaaaaggaag ggcttgcagc cttgctctcg attgagcact tccgagggta      4080
     tctcgagggg agccactttg tcctggtgac agactcttct gctttgacgt ttattatgcg      4140
     gtcaaagtgg aagagttcat ctcgtctcag tcgatggagt ttgtccttgc aaatgtacga      4200
     catgaccatc gtgcatcgcc gtgggaagga caacgttgtc cctgatgcac tgtcgagaag      4260
     tgtcatggca gtatcagtga aatctgactg tgattggttc aactccctta aacaacaagt      4320
     tgaggataag ccaggcgagt atccagactt tcgcctgcat aacggtcaat tgttaaaata      4380
     tgtatttaac gatgaattgg ccgatcatcg tttcgattgg aagattatac ccagcccgga      4440
     agctcgcttg gatataatca aagccagtca cgatggtcag atgcatatag gagtcgataa      4500
     aactctggga aagattcgcc agcagttcta ttggccgaac atgttccggg aggtgagaga      4560
     atatgttcgg aaatgttccg aatgcagaca aattaaaccc ccaaatgtgt caaccacgcc      4620
     gctaatggga gacatgcgtc aagcctttcg tccctggcaa attattgccc tcgactatat      4680
     tggtcccctt ccacgcacta cgtgcgggaa gcagtacatt ttagtgacaa tggacctttt      4740
     tagtaagtgg gtgcaattac gtgcgttccc ccagatttcg gcgaaatctc tttgcaccga      4800
     gttagtggat cactggtttt tccgtaattc kgtaccagct attgtgctaa ctgataacgc      4860
     tactaccttc acgtcccgag aattccgcaa tctgctggac cgcttcgaga tccaacagtg      4920
     gttaacttca cgttaccact ctcaagcgaa tccggtggaa cgcgtgaatc gcggcattaa      4980
     cacggcaatc cgctcttatg cgcgtgataa tcagagatcc tgggattctc gcttatcaga      5040
     aattgaggta gttattaact ctacaataca ttcctctact ggctacagcc cattccgggt      5100
     agcccgagga gaagaggtaa ttttgaaagg aagtgagcac tctcgtgttg cgagcgaagg      5160
     tgaaaccacg ctggaagaaa gagtagcccg aattaaagag caaaaccctc agttgtttgc      5220
     cctagttcaa aaaaacttag taaaggcaca cgcaacatcc accaatacat ataatttacg      5280
     caaccgtaaa cctgctaagc cttttgaggt aggcaatacg gtgtataaaa gaaacacgaa      5340
     gctttcaaat tctaacgaat attacaattc gaaattagga gcacaatatg taccttgtac      5400
     ggttgttgcc agacacggtt catcgtccta cgaattagtt gatgcgcatg gccgcaatat      5460
     tggcgtatgg cctgctcagt tgctgaaagc cgcaggacaa tgacctttga cgctattgtt      5520
     gtagcctgtc tgatgatcgt gagaggatcc gttcccggtc actgagtccg gcttgtagcg      5580
     aacctagaat aataaattat gaaaaatgac cttctctagt aattttcaaa ttgataagcc      5640
     taccctctgt ccttggcgca tttttcgtgg gcgttcgctt accgcggagc gactcctgac      5700
     gaagttcacg cttgttagga atctgttagg aacaatttta attacgttaa ttgtctgccg      5760
     gaggagacgt cctcaaacgg tggcataaaa gattagacgc gcgcggactc cgttccacag      5820
     tggacgagag tcaaccgaat actgaaatcc ggatttgaat cgatcgactc acgagaagtc      5880
     ggtctaagca gttcgcgcaa ccgagcaact gttatacgat cgttcgtacg tacgacatac      5940
     cgcaatacgc gagagtttgt ctcacgccat acgcataact ctcacgcagc ttgcgcacgt      6000
     gtaagttatc acgaatacgt cttgtgatag tatttccggc cacagtagac ttcgttagsa      6060
     aataggcaaa ttgtctctga tcacataatt agaaaattag tttcgtcgtg tcctccgtcc      6120
     gagtcggtcc tgtcccgcga gacagtcggt ggcgtattat aatgtttagt ccaggatgtg      6180
     taactgggat cacggacgta aagtggaggt ttgttctcat atagttttgt gtcgacaccg      6240
     ccctcgaaag cctagggagg ttgtgagagg tgaagattgt attgtgatgc tgctagtttt      6300
     gactttctgg taattagctt tctcgcgatg aattccctgc aatgtgcgtt tcgttcaatt      6360
     tcgttttctt cttcaagtta ctattatttt tccgtattta gtgctattgt taaataagat      6420
     ttgtacagtt taaatattag tttcctagaa caaaaaaaga acaattgtaa attatccttt      6480
     tttttcactg accagagggg gac                                              6503
//
ID   Gypsy-217_AA-LTR repbase;    DNA;    INV; 1038 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-217_AA_;
KW   Gypsy-217_AA-I; Gypsy-217_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1038
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1038-1038 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1038 BP; 254 A; 292 C; 274 G; 218 T; 0 other;
     tgttaccgta cggtaacctt ttgattaaaa tagatgtggg actgtaggtt aatcaaagat        60
     gtaaagcaac ttaacgtgca aattgaacgg tgcgggcggc ttgctatcta acgctccaaa       120
     cgctgcttga agaatgggtg gttgcgtaac agtggctgca ccacaaaacg gatgggggaa       180
     aacgcagcat cgacccgggg agaatgaatg tgttggggct gatatgatgc gatgaggctg       240
     agaagcggca gtatagaaga gactcccacc ctgaaaagag gtccgattta gagaatttga       300
     ccgaatcttg tctcgtggcg tcaattacca gcgacatcag cccttagtct ccaagccagt       360
     ggtgtatagt ggaacttcgg ccgaccgcct accgggttcg ccaacctata agctgaaccg       420
     aagtcagttt tggtagtacc tcccgctcag taaccgaaga gattctctgg tgacgtccgg       480
     ggagcacgtg gctctaaccc cagcagcgaa gttccaagcc cggtccttga ggcccatcag       540
     tccagacact gtcatcgtca ggcccgccgg ccagcccctt gacaccggct attgtagaca       600
     cccgcatata gatcggtgac cagagactgc ttcgaacgcc ttccacgaac accctaaact       660
     gcccgccagc ggagacgatc ctgctagtta ccgcatgaag caaccgtgtt gaagataccc       720
     tatcgcatcc gcttccctcg ggaagtccgc aacatagagc cctccagcgt cgagtaatcg       780
     tggtgaaccc ccgccgccgt agacgtcgcc ctgcaccgaa ggttagcaat aaattgaagt       840
     aagtgagaat tcattccatt tctgtaggac tcccacatcc gaaactctcc cctactgaac       900
     acgccctggg acccgggaga cagaagacgg cctttggtgc ccaccccgga agcggccgtt       960
     ggctcaagac cagctgcttg gggcttaggc cagtcctctt ctgggactga gcatttctcc      1020
     cggggtcaac tcgtttca                                                    1038
//
ID   Gypsy-218_AA-I repbase;    DNA;    INV; 5596 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-218_AA_;
KW   Gypsy-218_AA-LTR; Gypsy-218_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5596
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1039-1039 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4597-5061] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1320..3113
FT                 /product="Gypsy-218_AA-I_2p"
FT                 /translation="MQQLNTLVRNVRFYVTFKCFEYRMNIPSRIKPFDVHI
FT                 ETSRLPSEWEVWKLDLESFFIAQRIETQSERRAQLAYLGGPGLQELLRHLP
FT                 GVNQVPHVTLDPPFYDVAIRCLDEYFEPFRRKTFERHVFHQIRQTPGERFA
FT                 DFVMRLRKQISRCGYDANVVDELIADRIAQGCASEDLRIKLLQKDRSLEEI
FT                 VALGTSMVESAEHSKKFYQLSTLKPESHDINKVSERRWNWKPQNTKREGMF
FT                 QQPRFEKRTSERQTDRFICYSCGRRGRMQGSDECPAKRTKCANCGRIGHWA
FT                 KRCYSRGDSHKRRQQSPGRGPPQKRIRAITEEVEKQQSSDYIFFAMGRNVF
FT                 MFKVGGVDIPMTIDSGADANVITSDIWEQMKESGVKVCEMTNEVDRTLIAY
FT                 ASNEPMKMKGMFHADIEAGNRRTFSPFYVVENGQQCLLGDKTAKELQVLKI
FT                 GLNVNSINSEPKKPFPKIRGFTVEIPIDKDVQPVQQPYRRPPIAMEEEIGK
FT                 KLRALLERDIIERVAEPSPWVSPMVPVAKDSGEIRLCIDMRQANKAVLRET
FT                 HPLPIVEELLGSVNGAVRFSKIDIKDAYHQVEISERSRPITTFITKYGLFR
FT                 "
FT   CDS           3274..5562
FT                 /product="Gypsy-218_AA-I_1p"
FT                 /translation="MFGVSCAPELFQKVMESVLAGLEGVVIYLDDVMVYGT
FT                 NQDEHDKRLAAALQRLSEYGIMLNDQKCVYNAESLEFLGHELSAIGIRPKE
FT                 SRLSAIQQFREPQNVSELRSFLGLVCYVGRFIPHLAAKTDCLRQLLRAKVP
FT                 FKWTEKEKIAFNSIKTDICKIEHLGFFNPKHRTKLITDASPTGLGAVLLQE
FT                 DMNGQTKIIAFASKALTDLERKYFQTEREALSLVWGVEKFKLYLQGRKFVL
FT                 MTDCKALKFLFSTRSKPCARIERWVLRLQAYTYDVEHIPGNANIADAISRL
FT                 SLSSPEHFDEPVDAFIRTVAEQSAVAAIEFGDIVKATQEDEVIQKVMIALQ
FT                 TKSFDDVPREFKPFTNELCGIEGVLLRGTRLVIPRYLQHRVLEAAHEAHPG
FT                 IAAMKRRLCQKVWWPGIDKNAEDFVKNCKQCILVGSIGVPEPIRRSRMPDN
FT                 PWTDIAVDFMGPLPSGHSIFVMVDYYSRFTEAVVMKQTTAKRTVDALHETF
FT                 CRFGMPETIRSDNGPQFISEELKSFCAQYGIKLLKTTPYWPQANGEVERAN
FT                 RAILKRLKISQLSENTDWIWDLRSFLLMYNSTPHATTGVSPSKLMFGRILR
FT                 DKIPVFGEMGRRADDEEIRDRDWTNKIKGAEYADARRGAKQSVFKEGETVV
FT                 TKRMTKDNKLSSSFEPEECIIVSLDGPEATLRSTKTDRLFKRNVAHLKLFP
FT                 RDAHAETMMTSEEDITVRAGTGEDHCTVGEEKSERANQTNPSTKLERPTRT
FT                 HRKPTYLDEYRT"
XX
SQ   Sequence 5596 BP; 1780 A; 1011 C; 1317 G; 1484 T; 4 other;
     tctggcgacg aggattgaaa ttcaaaaggt ttcgctgtta aaatttttca aaaaaagtga        60
     ggaaatacca gttgtgagac tggagcaaag gctgaaggca gtgagtgaaa gaaaaagggg       120
     cacagcatct gccctcgact tccagcagaa ggtaagcgac gaggttatgt acaacatgat       180
     ggtagttgtt gaagagcttc gaaaacagtg ttagaatcgt cggggttttt tttttcaatg       240
     gtgctaacgg tgtttttatg aacggtggta tgaccgacga agaatgagaa tgaaaagsma       300
     ammaaaagaa atagtggtga aattttgtta tgtttgcgtt ttgtatggaa ctttgttttc       360
     aattacgacg tcatgggagg gttgtgtacc cagatggata ttctactgct gcaaaataag       420
     acacgtgaag gttgagaatg ataattgttt ttgggttgtt gatcttgtga tgagagtgta       480
     cctaaattga gcatttggac gcgtttgtga gacggcagta ttgaataaat tgagaagaca       540
     acggttgggt accaaaatac aagagctctg gttgtgtacc atacagtgga gttaaaggtt       600
     atgtacctgt gtgcggatcc tttccgaatg tagtgaaggt tgtgtaccaa tggaggaaaa       660
     cttttttttt tgctgtgtgc gttgaataaa atgagaatga aaatggttga gtaccataat       720
     acaagagtcc tggttgtgta ccatataatg gaaaaggctg tatacctgtg tgcggattat       780
     ttctgaatgt agcgaaggtt gtgtaccact gggggaaaga gttttggctg tgtgccatgt       840
     gaaacagttc ttgttttagc tgtacaagaa aaaaatatgg cgaacaatac aagaaataat       900
     agcgaatgaa gtgatttaca tatgaacata ttgctaattg aggaaaagcg actattaaaa       960
     ggaataacgt aagtggttgg ggcgcggggg ggggcccgcc gccatgcgag ggtgacagaa      1020
     tcatgcattt tagattaacg tttcgagctc ccaaggtaag tggaaatttg actttgtcgt      1080
     ataacagata ttattacaga ttacagatac tatgattttc accgatatat gtagcaccat      1140
     ttgaaaagaa aaaaaaaaca gttcaatgat tttttttaat tttaatgtaa ctaattctac      1200
     gcatgttaca tgctcatgaa ttttattgtt attttttata tgaattaaat tgtacggagt      1260
     tccgtaacgg atcatgatat gattctttgg aaacaaataa caacattatt gacggttcaa      1320
     tgcaacaact aaatacactt gtaagaaatg taagatttta tgttacattt aaatgttttg      1380
     aatacaggat gaacatacct agccgcatta agccattcga tgtgcatatc gaaacaagca      1440
     ggttaccatc ggagtgggag gtatggaaac tggatcttga atcgtttttc attgcacaac      1500
     gtattgaaac acaatccgaa agacgagcac aactggcata cttgggtgga ccgggacttc      1560
     aagaattact gcgtcacctt ccgggagtaa accaggttcc acatgtgaca ttagaccctc      1620
     ctttctacga tgttgctatc agatgtctcg atgaatattt tgaaccattt cgtcgcaaga      1680
     catttgaacg tcacgtattc catcaaatta gacaaactcc tggtgagcgg tttgcggact      1740
     ttgttatgcg actccgtaaa caaatctcaa gatgtggtta tgacgcaaat gtagtagacg      1800
     aactcattgc ggacagaatt gcccaaggtt gtgcatcgga agatttgcgt atcaaactcc      1860
     tccaaaaaga tagaagcctt gaagaaattg ttgctttggg aaccagcatg gtcgaatcgg      1920
     ccgagcactc caagaaattc tatcaattgt ccacattgaa accagaatct cacgatatca      1980
     acaaagtttc ggaacgtcgc tggaattgga aacctcagaa taccaagcgg gaaggcatgt      2040
     ttcaacaacc tcgttttgag aaacgaacaa gtgaacgtca aaccgaccgt tttatttgct      2100
     acagttgcgg tcgaagaggt cgcatgcaag gcagcgatga atgcccagca aagcgcacaa      2160
     aatgtgcaaa ttgtggtaga attgggcatt gggccaaacg atgttattct cgtggggatt      2220
     ctcataagcg acgtcaacaa tcccctggca gaggaccacc tcaaaaacga attcgtgcga      2280
     tcactgagga agtcgaaaag cagcaatcat cggattacat ttttttcgct atgggtcgaa      2340
     acgtgttcat gttcaaagtg ggaggagttg acatcccgat gactatagac tcaggagcgg      2400
     atgcgaacgt gataacaagc gacatttggg aacagatgaa agaatcagga gttaaggttt      2460
     gcgagatgac caatgaagta gatcgaactc tcattgcgta cgcatcgaac gaaccaatga      2520
     agatgaaagg tatgttccac gcagacatcg aagcaggaaa tcgacgaaca ttttcaccat      2580
     tctacgtcgt ggaaaatggg caacaatgct tgttgggtga taaaacagcc aaagaactac      2640
     aagtattgaa aatcggctta aatgtgaatt cgataaattc tgaaccaaag aaaccttttc      2700
     caaaaatccg aggattcacg gttgagattc caatcgataa ggacgtccag ccagtccaac      2760
     agccctatag gcgccctccg attgctatgg aggaagaaat tgggaagaag cttcgtgcgc      2820
     ttttggagcg agacataatt gaacgcgttg cggaaccatc accctgggtt tcgccaatgg      2880
     taccggtagc gaaagattcg ggggaaatac gcctatgcat cgacatgcgt caggcgaata      2940
     aagcagtgct gcgcgaaact catcctttgc ctattgttga agaactactg gggtcagtaa      3000
     atggtgctgt gcggttttcg aagatagaca taaaggatgc ctatcatcag gtggaaattt      3060
     ctgagaggtc tcggccgatt actacattta tcaccaaata cgggctattc aggtaaagcg      3120
     agaacgttat atccaagttt tttcttttat tcagatgaat ttgaagttgt tttgtataat      3180
     gttaaataga tgaactccca ttgaaattat ttgttttatt cttccaattg ttttttttga      3240
     ccaccattgc tttcaaccag atacaagagg ctaatgttcg gtgtgagctg cgcaccagag      3300
     ctattccaga aagttatgga atcagttctt gccggacttg aaggagtagt tatatacctc      3360
     gacgatgtta tggtgtatgg tacaaatcaa gatgagcacg ataaaaggtt ggccgctgca      3420
     ctacaacgac tatctgaata tggtattatg ctaaatgatc aaaaatgcgt ctataacgcc      3480
     gaatcactag aatttcttgg acatgagctc tctgctattg gcattcgtcc aaaggaaagc      3540
     agattgagtg ctattcaaca atttcgggag cctcaaaacg tatcagaact acgaagtttt      3600
     ttgggtctag tttgctacgt gggtagattt ataccacatc tagctgcaaa aactgattgt      3660
     ttgagacagt tgcttcgcgc aaaggtacca tttaaatgga cggaaaaaga gaaaattgcg      3720
     ttcaattcga taaaaacgga tatatgtaaa attgagcact tgggattttt caatcccaag      3780
     caccgtacaa agctaataac cgatgcaagt ccaacggggt taggagctgt ccttctacaa      3840
     gaagatatga atggacaaac aaaaataatc gcttttgcca gtaaggctct aacggatcta      3900
     gagagaaaat actttcaaac cgaaagagaa gctctatccc ttgtgtgggg agtagaaaaa      3960
     tttaagttat acttgcaagg cagaaagttt gtactaatga ctgattgtaa ggctctcaaa      4020
     ttcctattta gcaccagatc gaaaccctgt gccagaatcg aacgatgggt ccttcgatta      4080
     caagcctata cgtacgacgt agaacatatt ccgggaaatg caaatatagc tgatgctatt      4140
     tcgagactat cgttatcctc acctgaacat tttgatgaac ctgtagatgc gtttattcgt      4200
     acagtagctg agcaatcagc ggtagcagca atagaatttg gtgacattgt aaaagcaacc      4260
     caggaggatg aagtaattca aaaagttatg atagcattac aaacaaagtc gtttgacgat      4320
     gttccaagag aattcaaacc gtttactaat gagctttgtg gaattgaagg tgttctgctc      4380
     agagggacta gattggtaat tcctcgatat cttcaacatc gtgttctcga agcagcacat      4440
     gaagcacatc ctggaattgc tgctatgaaa cgcagattgt gccaaaaagt gtggtggcca      4500
     ggtatcgaca aaaatgcaga agacttcgtg aagaactgta aacagtgtat attagttggt      4560
     tccattggag tgccagagcc gatacgtcgc tctagaatgc cagataatcc atggactgac      4620
     attgcggtag actttatggg gccacttcct tccggtcatt cgatatttgt tatggtcgat      4680
     tactatagca gattcacaga ggcagtagtc atgaaacaaa caactgctaa gcgaacagtt      4740
     gatgcgttac atgaaacatt ttgcaggttt ggaatgccag agactatccg atctgacaat      4800
     ggtccacagt tcataagcga agaactaaaa tcattttgcg cccaatacgg aataaaacta      4860
     ttgaaaacga cgccatattg gcctcaggcc aatggcgaag tagaaagggc gaaccgagcc      4920
     atacttaaac gtctaaaaat cagtcaactt tcggaaaaca cagattggat atgggacttg      4980
     cggtcattcc ttctcatgta caattctact ccacatgcga ctacaggagt ttcaccatct      5040
     aaactgatgt tcggtcgtat tttgcgggac aaaattccag ttttcgggga aatgggtaga      5100
     cgtgccgatg acgaagaaat acgagatcga gattggacaa ataaaatcaa aggagcagag      5160
     tatgcggatg cacgacgtgg agcaaagcaa tctgttttca aagaaggcga gacagtggtc      5220
     acaaagcgca tgacgaagga caataagctt tctagcagtt tcgaaccaga agaatgtata      5280
     atagtaagtt tggacggccc agaagctact ttgcgttcaa cgaaaactga tcgacttttt      5340
     aagcggaacg tcgctcactt gaaactattt cctcgagatg cacatgcaga aacaatgatg      5400
     acaagcgaag aagacataac ggtaagagca ggaactggcg aagatcactg taccgttggg      5460
     gaagaaaaat ctgaacgagc gaatcaaacc aaccctagca caaagctgga gcgtcctacg      5520
     cgcacacatc gaaagccgac ttatcttgat gaatatcgaa cataattgat tgtaggtcag      5580
     taaagttaag ggggga                                                      5596
//
ID   Gypsy-218_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-218_AA_;
KW   Gypsy-218_AA-I; Gypsy-218_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1040-1040 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 228 BP; 68 A; 37 C; 56 G; 67 T; 0 other;
     tgtagagttt gatattataa tccattttca tacgttagac tacatttcaa tgtaagcttc        60
     taggttggca acgttagcga cggtcgggag agttccgtgg agagttgacg tgaaagcaag       120
     tgagtgagac cgtgaggaac gcgggttgta aaacgatcgg acgaataaat gtaatttaag       180
     tgcttttaac tacctgtctg aattactatt ccgaaaccag actttaca                    228
//
ID   Gypsy-219_AA-I repbase;    DNA;    INV; 5401 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-219_AA_;
KW   Gypsy-219_AA-LTR; Gypsy-219_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5401
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1041-1041 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4267-4737] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1644..3656
FT                 /product="Gypsy-219_AA-I_2p"
FT                 /translation="MKQTFELAKRYQNDDFHGEAGTSRGPVKSRLGIRPYD
FT                 YGQQARGYRPTGSKRVSFKPQGGAVPRARPDYSQMVCNFCGMKGHIKKKCF
FT                 KLKNLHRDAVNLVDSYRPGPSADRHIAELMERMQTNESEDEQSDSGDCLEC
FT                 MLVSSINKISDPCLVFVEIDGKTVEMEVDCGSSVSVISKSRYFSKFSNPLR
FT                 KYSKKLIVVNGSKLKIEGEAKVMVKFNNKQEMMQLLVLDCDNEFYPLLGRT
FT                 WLDVFYPNWRHYFTNSLVINSLETESSKIAVDEIKKKYSQVFEKNFSKPIK
FT                 GFKAQLVMRDESPIFKKAYDVPYRLREKVADYLDKLEKEKVITSIKTSEWA
FT                 SPIVIVMKKNNDIRLVIDCKVSINKSIIPNTYPLPTAQDIFANLAGCKIFC
FT                 ALDLEGAYTQLELMERSKQFVVINTMKGLYTYNRLPQGASSSASIFQQVMD
FT                 KVLEGIAYVSCYLDDVLIAGRNLEECRKNLFLVLERLAKANIKVNFEKCKF
FT                 FVTELTHLGHIISEKGLMPCSDKIATIEKAKAPRNETELKSFLGLLNYYHK
FT                 FIPHLSSKLYHLYNLLKNNVKFVWDDNCQKAFEESKSLLLKTNFLEFYDPK
FT                 KPIVVISDASSYGLGGLIAHVIEEEEKPISFTSFSLNEAQKKIPYFTFRSV
FT                 SIGLHDKKISQISVWSTLYSLH"
FT   CDS           3547..5283
FT                 /product="Gypsy-219_AA-I_1p"
FT                 /translation="MKHKKKYPILHLEALALVCTIKKFHKYLYGQHFTVYT
FT                 DHKPLVGIFGKTGKNSIFVTRLQRFILDLSIYDFDIIYRPSHKLGNADFCS
FT                 RFPLRQDVPENLDPEIIKSINFSKHIPLDYQMIAEGTRNDEFLQEIKGFLH
FT                 KGWPERVSKRFSQVFANQQELELVDDCLLYKDRVIIPKIYQYQVLKLLHNN
FT                 HAGVVKMKHLARTMVYWYGINADIDNFVTQCDACNSMMIPHKSENSSKWMP
FT                 TAKPFSRIHIDFFYFEHRTYLLIVDSFSKWIEIELMKKGTDCNKVLKKLIA
FT                 FFARFGLPDVLVSDNGPPFNSHDFKFFLERQGIKVMKSPPYNPSSNGQAER
FT                 LVRTVKEVLKRFLLEPEIMEIDLEDQISLFLFNYRNNNMTSDGHFPAERIF
FT                 SYTPKTILDLINPKRQYKHHLEVPQPVDEIIKKSSAGKIPMYPKDTIDDLM
FT                 VGDALWYKNHNPNHHSRWIKASFIKQYSPNTFQIRIGSAETMAHRDQIRIR
FT                 KDDSTWRRPNVFITRCDPNKTLNDAVVNPSEGQEVRKGVDDGLLVESTRSR
FT                 KRKRVVPEADLQEPRRSKRSKKVNRSDDYHYD"
XX
SQ   Sequence 5401 BP; 1802 A; 872 C; 1130 G; 1596 T; 1 other;
     cccttcggtt taaatattta aaagtggcga acgagaaaaa aaaattgtgc gtgaaaatat        60
     ataccccgga aaaagtggac agcttgtaaa gagccaactt tccagtttct gcacggcaca       120
     tcggcggacg ccattgtatc tggggcattg aaggacggct gatcatttgt ggcattactg       180
     cggcggtaga aaatcagcgg cttcatccga caggtgcttg aaatccagct gtgagtcgaa       240
     atcaccgaat tgattggtaa ctcatcctcc gtcgtaagta gaaactctcc gtgggtaagc       300
     ggagtgattt ctggttattt ttttatttct aacgttgcgt aaccattttg tgcaaagcgt       360
     ctgaagagac aaagaaaagg ccttttcgtc tattgaaaca cacaacataa tagggtgacc       420
     caatctttta tatgtttaac aattaatgat aatagacttg caaaaagatt tcttttgtgg       480
     ttctatttaa taagagattt tattcttttt tttaacagat aacagctagc gtatgaagcc       540
     attgtgtagt gatttttatc acatgattca ttagctgggg attgtttcta agcaaaaaga       600
     aaagtttcaa cggaacggtt ttggataagt cactagcgcc tttggacatt gctggaaggt       660
     tgagacacgg tccggaggtg agcctaatcc aaattcttca catcagcgac agttattaag       720
     gatcgaccgt ttggaaaccc accaactgcg tccggcagga ttaacgacaa cggtcgtctc       780
     gttggcaaag gtcaaaagga cattttcggt aagtcagttt tttatttttc tcttaattga       840
     atcacaaagc cagtgatatt tttctaattg ctaattgagt ttgtacattt gttttgtttt       900
     actattgtta ttttttgtgg atttgtgcaa ttatttctgg ccgttactcc tatattcttt       960
     atcattgacg aactgcgtac atattttcgc atatattttg cataatcata taattgtata      1020
     gaaaacatag aaagtttaac gatgagttcg aacattgcct gtaccattga gccataccgc      1080
     agaggtgcta gttttaacga ttggtactcc aggctgaaat tcttttttaa agttaacaaa      1140
     atcgtcgacg aagacaaaat ggcgtatttc gtcacactca gcgggccagt gatttttgaa      1200
     gaaattaaac tactgtaccc tgctggcaat tttgaagagg cggctttcga cgatttaatc      1260
     gcgaaattaa aaaaccgttt agacaaaata gaacccgatt tagtccagcg atataaattt      1320
     agtaccagaa tccaaaatca cgacgaaact actgaagatt tcattttgtc gttaaaatta      1380
     caagccgaat tttgtggttt tgggaatttt aaagatatag ctatcttaga tcgcattatt      1440
     gcgggaatta aggacaaaaa cttgagacat cgattactag gagaagaaaa gctgactttg      1500
     gtaaatgcag aaaaaatcat agcgacttgg gaggtggcaa aggcgaatgc tgatacagca      1560
     gaggagagac aaacgtcgaa cccagtacag attgcagcaa tccagagcgg atcaaaggaa      1620
     attatggaaa agcttatggg aaaatgaagc agacgtttga actagcgaaa agataccaaa      1680
     atgatgactt ccatggagag gcaggaacca gcaggggtcc agttaaaagt cgtcttggga      1740
     tcagaccata cgattatgga caacaagcga gaggatatcg accaaccgga tccaaaaggg      1800
     ttagttttaa accacaagga ggagctgtac ctcgggctag accggattat tcgcaaatgg      1860
     tttgcaattt ttgcggtatg aaaggccaca taaagaaaaa gtgttttaag ttgaagaatc      1920
     tccacaggga tgcggtcaat ctagttgaca gttacagacc aggacctagt gcagatcgac      1980
     acatagcaga actgatggag aggatgcaaa ctaacgagtc ggaagacgag cagagtgatt      2040
     caggtgattg tttggaatgt atgttggttt cgtccattaa caaaataagt gatccgtgtt      2100
     tggtttttgt tgaaattgat ggtaaaactg ttgagatgga agttgattgt ggttcgtcag      2160
     tttctgttat tagtaaaagc agatattttt cgaaattttc aaaccctttg cgaaaatata      2220
     gcaagaaact aatcgtggtc aatggatcaa aacttaaaat tgaaggtgag gcaaaggtca      2280
     tggtcaaatt taacaataaa caagagatga tgcaattgct tgtgcttgat tgcgataacg      2340
     aattttatcc tttattgggg cgtacttggc tagatgtgtt ttatccaaat tggagacatt      2400
     attttactaa ttcattagtt attaatagtc ttgaaacaga gtccagcaaa attgctgttg      2460
     acgaaataaa aaagaagtac agtcaggtgt ttgagaagaa tttttcaaaa cccattaaag      2520
     gattcaaagc tcaacttgta atgagagatg agtcacctat ttttaaaaaa gcctacgacg      2580
     ttccttatag acttagggaa aaagttgctg attatttgga caaattagag aaagaaaaag      2640
     tcattacttc tatcaagaca agcgaatggg catcacctat tgttattgtt atgaagaaaa      2700
     acaacgacat acgtttagtt attgattgca aagtatctat caacaaatca attataccaa      2760
     atacttatcc attacctaca gcacaagata tttttgcaaa tttggcaggt tgtaagattt      2820
     tttgtgccct tgatttagaa ggagcataca ctcaacttga gttgatggag aggtccaaac      2880
     aatttgtggt tatcaatact atgaaaggat tatatacata taatagactt ccacaaggag      2940
     cttcttcaag tgcttctatt tttcagcagg taatggataa ggttttagag ggtatagcgt      3000
     atgtgtcatg ttacttagat gatgtgttaa ttgctgggag aaatctggaa gagtgtagga      3060
     aaaatctttt tttggtctta gagagactag caaaagctaa tataaaggta aattttgaga      3120
     aatgtaaatt tttcgttact gagctcactc atctagggca tataattagt gagaaagggc      3180
     taatgccatg ctctgacaaa attgctacaa ttgagaaagc caaggctccc agaaacgaga      3240
     ccgaattgaa atcatttctg ggtttgttga attactacca taaatttatt ccacatttgt      3300
     cttcgaaatt atatcatttg tataatctat tgaaaaataa tgtaaaattc gtttgggatg      3360
     acaactgtca aaaagctttt gaagaaagca aaagtctgtt attgaaaacc aattttttgg      3420
     aattttatga ccctaaaaaa ccgatagtag ttatttctga tgcatcaagt tatggtctcg      3480
     gcggtttgat agcacatgta atagaggaag aagagaagcc aattagtttc acatcatttt      3540
     cattaaatga agcacaaaaa aaaataccct attttacatt tagaagcgtt agcattggtc      3600
     tgcacgataa aaaaatttca caaatatctg tatggtcaac actttacagt ttacactgat      3660
     cataagccgc tagtaggaat ttttggaaag acgggtaaaa actcgatatt tgtgaccaga      3720
     cttcagagat ttatcttgga cttgtccata tatgattttg atataatcta tagaccatca      3780
     cataaacttg ggaatgcgga tttttgttcg agattccctt tgaggcagga tgttcctgaa      3840
     aaccttgatc cagaaattat taaaagtatt aatttcagca aacatattcc gttagattat      3900
     caaatgatag cggagggtac gaggaatgat gaatttttac aagagatcaa aggattttta      3960
     cacaaaggtt ggcctgaaag agtgagcaaa cggtttagtc aagtttttgc gaatcagcaa      4020
     gaattagaat tagtcgacga ttgtttgctc tacaaggaca gagtgattat accaaaaata      4080
     taccaatacc aagttttaaa actattgcat aataatcatg caggtgtggt caaaatgaaa      4140
     catttggctc gaaccatggt ttactggtac ggaatcaatg cggatataga caattttgtt      4200
     acacaatgtg atgcttgcaa tagcatgatg attccgcata aatcagagaa ttcgtccaaa      4260
     tggatgccca cggctaaacc ttttagtaga atacatatag atttttttta ttttgaacat      4320
     cgtacctatc tattgattgt tgacagtttc tccaaatgga tagaaataga actaatgaaa      4380
     aaaggcactg attgcaacaa ggttttaaag aagttaatag cattttttgc tcgttttggc      4440
     ttaccagatg tgttggtatc ggacaatggt cccccgttta attcccatga ttttaaattt      4500
     tttcttgaga ggcaaggtat caaagtgatg aaaagccctc cttacaaccc ttcaagtaat      4560
     ggacaagccg aaagattggt aagaacagtg aaagaggtgt tgaagagatt cttgttggaa      4620
     ccagaaatca tggagataga tctggaagac cagataagtc tattcttatt taattataga      4680
     aacaacaaca tgacaagtga tggacacttt ccagctgaga ggatattctc ttacacacca      4740
     aagaccatct tagatttgat taaccccaaa agacagtata aacaccattt agaggtacca      4800
     caaccagttg atgaaatcat caagaaatcc tcagcgggga aaatcccgat gtatccaaaa      4860
     gataccattg atgatctgat ggtgggagat gctttatggt acaaaaatca taatcctaac      4920
     caccattcta gatggataaa agcatctttc attaagcaat actctcccaa tacattccag      4980
     atacgtattg gaagcgcaga gaccatggca catcgggacc aaatcaggat tcgtaaagat      5040
     gactcaacgt ggcgaaggcc taacgttttc atcacgcgat gtgacccgaa caaaacattg      5100
     aacgatgcag ttgtgaatcc aagcgaagga caagaggttc gcaaaggcgt agacgatggt      5160
     ctgttggtcg aaagtacacg aagcagaaaa aggaaacgtg tggtccccga agctgattta      5220
     caggagccta gacggtcgaa gcgaagtaaa aaagtgaacc gaagtgatga ttatcattat      5280
     gattaagttt tgaattatct attaacgagc tcatgtttag attttaaatt tttgaattcg      5340
     atttcttgat aaatgtcaag ttctgattat atawtatact ttcttggtaa agggggagaa      5400
     t                                                                      5401
//
ID   Gypsy-219_AA-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-219_AA_;
KW   Gypsy-219_AA-I; Gypsy-219_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1042-1042 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 208 BP; 62 A; 48 C; 40 G; 58 T; 0 other;
     tgtcatatac ctgcgcattc taagcgccgt cgaactgtca ttcgatgcga agttcgaata        60
     acgaacaagc gaaccgaagg gttcgatctc gaactataat aaatagacga ttagtctgat       120
     ctgaaacttc aagcttatcg gtctacaaca tcacacgtcc aatcgctgtc ataaagttca       180
     gagtatcttt taaggtcggt cttttcca                                          208
//
ID   Gypsy-21B_OrIn-I repbase;    DNA;    INV; 3979 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21B_OrIn-I; Gypsy-21_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-3979
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1541-1541 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. The consensus is ~92% identical to
CC   that of Gypsy-21_OrIn-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           772..3918
FT                 /product="Gypsy-21B_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RSRKMLVSQTLRRSGYKMYSTLLRNSNKKLTSAAAQR
FT                 AESAAAALDSISARLFVTDRKSHRTFLIDTGAAVSVLPPLSNSRPLQDNAL
FT                 YAANGTLISTYGYKSLNVDLGLRRPLNWRFVIADVKKPIIGADFLNRHGLI
FT                 VDIQGRRIIDRETKLSTSGRTGLASLESLSTIPTGKYADLIGKYKDITQPA
FT                 FAKDVIKHNVQHYIETTGRPVAEKARRLTAQRYKAAKEEFYRMVEEGICKP
FT                 SKSQWASPLHIVDKPDGTIRPCGDFRRLNSKTTPDKYSIPHISDLNIGLTG
FT                 KTIFSTLDLERAYFQIPIAEEDIPKTAVITPFGLFEFTRMCFGLRNAAQTF
FT                 QRFIDSIFRDLPFVFAYIDDILVSSSSEEEHKEHLEEVFKRLSTHGLTLKI
FT                 PKCVFGKNTVNFLGYNIDANGITPIETKVDAINSYPKPETIKDLRRFLAMV
FT                 NFYRKCLPHAAERQRPLNEYLKGSKKNDKRKIDWNPESTAAFDQTKEDLRN
FT                 ATRLGHPNPDAIISLDCDASDKGIGAALQQLDGDTWTPLGFFSKALSPAQQ
FT                 KYSTYDRELLAMYQAVKHFQPLLEGRKFMIRTDHRPLTFAFDKPSTSSSPI
FT                 RTRYLSFIAQFTSDIRHINGAENPVADALSRVDEVDLLPDNWEALEKAQLL
FT                 EEQNGTLPTGSFKLEKISIPGSLVSILCETTLDKPRPYLPFHFRRAAFHNI
FT                 HTPSHPGVRTSRKMVSQRYFWPGMNVDTGKWAKSCIGCQKSKITRHTISPL
FT                 GSFPTAGRFEHLHIDLIGPLPTSEGMTYCLTMIDRFSRWPEAIPLPNTLAE
FT                 TVARALIEHWIARFGTPLRLTTDQGRQFESQLFRQLVLLLGIDRIRTTAYH
FT                 PQANGQIERLHRTLKAALTARDAQTTWTKHLPIVLLGLRNALNTGNHSPAQ
FT                 LVFGTTLRLPGDFFIPSKESVDCDAFVQQLQNTITSLRPMPPRNQSTKVFV
FT                 PKSLQTCTHVFLRIEGLKRSLTPPYEGPFRVLSRTDKTFSIQLDNRETTVS
FT                 IDRVKPAIFDDAPSNEGEPADLRIQHQLSRLLRRRSPPDPDGL"
XX
SQ   Sequence 3979 BP; 1164 A; 1123 C; 837 G; 855 T; 0 other;
     actggtgacc tatcgacgtt taacagaact aagactgact tgataactct tcgccggcaa        60
     catggtcaac gaggatcaag agactactca tcaagagggt cagcccactc cgcaaggaac       120
     ggagtccatc ggccctgcac cacgcctgcc tacattttgg aaagccgaac cagctctctg       180
     gtttatacaa attgaagcgg ttttcagcac ttcacgggta aattcgagcg ccaaaaaata       240
     tcaactcgtc gtggccaact tggaactgga acagttacga caggtagctg atatacttcg       300
     ggaaccggga gctactccgt acgaagcgtt aaaagcccga ttattgtcga cattcgaaga       360
     aagtcaaagt tccaaaataa aacgtttact ggaacagaca acgctcggag atgaaaagcc       420
     gtcacatttc ctccgctcca tgcgacaaaa agccgggacg ctactctctg acgacatgtt       480
     aaaaagcctc tggctgcgcg ccctaccgtc cagaactcaa gaaattttaa ctacggtaga       540
     cactgacgac ttaaataaat tggccctaac tgcagacaag atcgcagagg tcgacaaacc       600
     atcagtcttc tcagtttctc cgtccgacgc cggagcgaaa aacgaccaaa tagccgaatt       660
     atcgagacaa gtctcggaac tcgctaaaca agtccagaaa ctgcagatcc agaaaaggtc       720
     tagaagcaga acccgttcga aatctccagc gaagcgagac aattcgacta acgaagtagg       780
     aaaatgctgg tttcacagac gcttcggaga tcaggctaca aaatgtactc aaccctgctc       840
     cgaaactcta acaaaaaact aacctcggcg gcagctcaac gggctgagtc tgccgcagca       900
     gctctcgact cgatctccgc ccgccttttt gtaacagacc gaaaatcaca taggactttt       960
     ttaatagaca cgggtgccgc ggtgtcggtc ctaccgcctc tttcaaatag tcgacctcta      1020
     caagataatg ctctctacgc cgcaaatggt acgttgattt ccacatacgg gtacaaatca      1080
     ttgaatgtgg acctcggact acgtaggcca ttaaactgga gattcgtaat agccgatgtc      1140
     aagaaaccga tcattggggc tgatttttta aatcgccatg gtctcatcgt agacattcaa      1200
     ggccgacgaa tcatcgatcg agaaaccaag cttagcacct ctggacgcac cggtctcgct      1260
     tcactcgaat ctctctcgac tataccgacc ggaaaatacg ccgacctcat agggaaatac      1320
     aaggacataa cacaaccggc tttcgcaaag gacgttatca aacataacgt gcaacattac      1380
     atcgagacaa ccgggcgccc tgtcgcagaa aaagcacgcc gtctaacggc gcagaggtat      1440
     aaagccgcaa aagaggaatt ctaccgaatg gtggaagaag gcatctgtaa gccttccaaa      1500
     agccaatggg ctagtccatt acacatcgtt gataaacccg atggcaccat tcgaccctgc      1560
     ggggactttc gccgtctcaa ctcgaagact accccagaca aatacagtat tcctcacatc      1620
     agcgatctga atattggtct tacaggcaag acaatatttt ctactctcga tttggaacgc      1680
     gcctactttc aaatcccgat agctgaagaa gacataccca agacagccgt tataactcca      1740
     tttggactct tcgaatttac aaggatgtgt ttcggactga ggaacgccgc gcagactttc      1800
     caaaggttta tagactctat ttttcgcgac ctccctttcg tgttcgcata tatcgacgac      1860
     attctcgtct cctcgtcttc cgaggaagaa cacaaggaac acctcgaaga agtatttaaa      1920
     cgtctttcaa cacatggatt aactctcaaa attccaaaat gtgtcttcgg aaaaaacacc      1980
     gtcaatttcc tcggttacaa catcgatgca aacggaatca caccgatcga aactaaagtc      2040
     gacgccatca actcttaccc gaagcccgag accatcaagg acttaaggcg attcttggct      2100
     atggtcaatt tttaccgaaa atgtcttcct cacgcggctg aaaggcaacg tccactcaac      2160
     gaatatttaa aaggcagtaa gaaaaatgac aaacgcaaaa tcgactggaa cccggaatct      2220
     acggcggctt ttgatcaaac taaagaagac ttaaggaatg ccacgcgatt gggacaccca      2280
     aaccctgatg ctatcatctc actcgactgc gacgcatcag acaagggcat cggagcagca      2340
     cttcaacaac tggatggaga cacctggaca cccctcggat ttttttcaaa agcactgtct      2400
     ccagcccagc aaaaatactc cacatacgac cgcgaacttc tcgctatgta ccaggcagtc      2460
     aaacacttcc aaccacttct cgaaggacgg aagttcatga ttcgcacaga ccatcgccct      2520
     ctcacgttcg cattcgacaa accatcaact tcaagctcac ctattcgaac tcgttacctc      2580
     agcttcatag cgcaattcac atcggacatc cgacatataa atggcgctga aaatccggta      2640
     gcggacgctc tctcccgagt ggacgaggta gatctattgc ctgacaattg ggaagcgctc      2700
     gaaaaagctc aactacttga agaacaaaac ggcactcttc cgacgggttc atttaagctc      2760
     gagaaaatta gcattccagg ttcactcgtt tcaatccttt gcgagactac actggacaaa      2820
     cctcgaccgt acctcccatt tcatttccga agagccgcct ttcacaacat ccatacgcca      2880
     agtcaccctg gagttcgaac ttctcgaaaa atggtctcgc agcgatactt ttggccgggc      2940
     atgaacgtgg acaccggaaa atgggccaag tcatgcatcg gctgccaaaa atcaaaaatc      3000
     acgcgacata cgatctctcc acttggatct ttcccgaccg caggaaggtt cgaacacctc      3060
     cacattgact taatcggtcc actaccgact tccgaaggaa tgacgtactg tttgacaatg      3120
     atcgaccgtt tttcgagatg gccagaagcg atccctcttc cgaacacgct cgccgagaca      3180
     gtcgcccggg ctctaatcga acattggatc gctcgcttcg ggacgccact ccgacttaca      3240
     acggatcaag ggagacaatt tgaatcccaa ctctttcgtc aactcgtcct gcttcttgga      3300
     atcgaccgta taaggaccac agcctatcac ccacaagcca acggccaaat tgagagattg      3360
     caccgaacgc tcaaggcggc tcttacggct cgggatgcac aaacaacctg gacaaaacac      3420
     cttcccatcg tgctccttgg acttagaaac gccttaaaca cggggaatca cagtccagct      3480
     caacttgtct tcggcaccac gcttcggctg cctggagatt tcttcatacc atcaaaagag      3540
     tcggtggact gcgacgcttt tgtccaacag ctacagaaca caataacttc gttgcgaccg      3600
     atgcccccca ggaaccagtc gacaaaagtc tttgttccga aatcgctaca aacgtgcacc      3660
     cacgtcttcc taagaataga ggggctcaag cgttctctaa cacctccgta tgaaggacct      3720
     ttccgagttc tttcccgtac cgacaagact tttagcatac agctcgacaa ccgggaaacc      3780
     acggtatcca tcgacagggt gaagcccgcg atcttcgacg acgcgccatc gaacgaaggc      3840
     gaacctgcgg acctgcggat acagcaccaa ctcagccgac tccttcgacg cagatcacca      3900
     cccgatccgg acggactgtg aagaagaagg tacacttcga catatgactc cctcctggca      3960
     acgcttttgg ggggggcta                                                   3979
//
ID   Gypsy-21B_OrIn-LTR repbase;    DNA;    INV; 810 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21B_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-810
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1539-1539 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 810 BP; 249 A; 212 C; 139 G; 209 T; 1 other;
     tgtggcggta caaccgtaca gcctacgcac cctaacggaa gtaaccaaaa gctactgcct        60
     aactccttca ccacaagaga gcttctagcg atctcacgaa gtctcttcaa actcctttct       120
     tttcttttat ttaattgtat tctttcattt acgttattaa aaaattgtta attattmaaa       180
     agcaaaaact cactttgtaa aaaaccaatg tacatacaga aataaactaa catgtaaaag       240
     aaataaaata aatactcgga cgcttctcgc agaaccttgc aaaagcggat cttatataga       300
     ccgcccgtga acgtccattt aacaagtctt tttcaagatt aataatcaat cactactcgt       360
     catccagcca agcaccatcc agccctgcag aaggaaaaag caccgtctcc gtccgaacgt       420
     ggaagcccgg atacagcctg ccttgggaca tccctggatt gctcagagaa aggacttcac       480
     cactccgaaa gacgccaatc caaatccttg gatattcaac ggttcttttc aggaccggct       540
     gctctccgag ctctataacg ccccttaggc gtatcactat ttaaatagtc tctctcgaga       600
     caccaattca ggaagcgtga gactgactca caaaacttga cgctccgctc tcctttttca       660
     ttgggaataa gaataatccc acgccagaac gacatctgga gttccttgac gggaaacgac       720
     ggtgtcgaga aggcacatac ttttcctatt ggatcttcta actttcttcc ggcccttttc       780
     aggaccaaga aagttagcga gcatccaata                                        810
//
ID   Gypsy-21_AA-I repbase;    DNA;    INV; 4284 BP.
XX
AC   supercont1.124;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_AA_;
KW   Gypsy-21_AA-LTR; Gypsy-21_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.124; Positions 1276959 1281242.
XX
CC   Positions [3251-3538] - Integrase core
CC   'ACCAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..3538
FT                 /product="Gypsy-21_AA-I_1p"
FT                 /translation="MESTNMPANQEPGIQDVILQMAQLLQQMAVQQQLPQH
FT                 QSQEQILESLSSNITELSFDEENGVTFGRWFDRYQDLFENDARQLDDAAKV
FT                 RLLLRKLDTASHSRYLNYILPKLPKEVKFEDTVKILKKIFGNQISTFRKRF
FT                 KCLQLVKSDCEDIISYGGHVNRACEDFQFQNLTLDHFKCLMFVSGLKASKY
FT                 ADVRARLLSILENEKPEAPATLQSLIDEYQRLVNLKEDTTIIEQQGSSKSM
FT                 VHAVRDRKSATHQKVSVKYESKKPKSPCWQCGQMHFVKECGYSTHICKECN
FT                 HVGHKEGYCSSSMKSAKPSNSAQTDNSKKRKKGKSSAETKGVFIVNHIEHR
FT                 EKERKFVTMMINDVPISLQLDSASDISIVSEAVWEELGKPKMKPSSSQASN
FT                 ASGEPLLLLGEFDCNVTLKGTTKRGRCFVTSVRNLNLMGIEWIDLFNLWSI
FT                 PFDTICNQVVVPSRQEIDREIQQLKMNHKDVFSESLGFCNRTKVQLHLKPG
FT                 SKPVFCPKRPVPFHSVPMIDQLNRLQSLGIITPVDFSEWAAPIDAVKKPDG
FT                 RVRICADYSTGLNNALEANNYPLPTPEEIFAQLAGSQYYSVIDLSDAYLQC
FT                 KVTEDSTQLLTINTHRGLFRFNRLAPGVKSAPGAFQRLIESLVADIPGVRL
FT                 FIDDIIIAGKDWKSHAESLNLVLQRLKDWGFHLKMQKCKFFQTEVRYLGHI
FT                 TDRSGIRPDPEKVKTISRIPPPQNISELRSFLGAVNYYGKFVPNIHDLRHP
FT                 LDQLLRKDVKWNWSADCQRSFEKFKHVLKSNLLLTHYNPNLPIVVAADASK
FT                 TGIGAVIFHKFPNGSLKAIQHASRSLTTAEQAYGQPEKEALALVYGVTKFH
FT                 KFLLGRRFTLQTDHKPLLSVFGSKKGIPVHTANRLQRWALIMLNYDFDIEY
FT                 VSTNEFGCADMLSRLIDRSMRPEEDYVIASVSLEEDMVSILNTTVEAVPVS
FT                 ALQDATKKCKILQQVKRYILDGWPAVSKQVAQEVQPYYNRRESLSIISECV
FT                 LFKERVIVPETFRRRLLNQFHRGHPGVVRMKSIVRNYVYWPGIDGEIEDFV
FT                 QRCVHCASAAKAPVKTKPEPWPAPEKPWSRIHIDYAGPVDGNYFLVVVDPF
FT                 TRWPEVVLTKSITAKTTIKLLKQMFSTFGIPETVVSDNGTQFTGSEFKNFC
FT                 KSFGIRHIRTAPYHPQ"
XX
SQ   Sequence 4284 BP; 1255 A; 1062 C; 968 G; 999 T; 0 other;
     tttggcgacg aggatggaat ccacgaacat gccagctaat caagaacctg gaattcaaga        60
     cgttatcctt caaatggccc agcttcttca gcaaatggcg gtccagcagc aacttccgca       120
     gcatcaaagt caagagcaga ttttggaatc cctgtcatca aacattaccg aattatcttt       180
     cgatgaagaa aacggagtca cgtttggccg ttggtttgat cgttatcaag acctcttcga       240
     gaatgatgcc cgccagctgg acgatgccgc aaaagttcgt cttcttctcc ggaagctaga       300
     caccgcttcg cacagccgct atctcaatta cattttgccg aagttgccaa aagaggtcaa       360
     gtttgaagat accgtgaaaa tcctcaagaa aatttttggt aatcaaatat ccacattccg       420
     gaagcgattc aaatgtctcc agttggtgaa gagcgattgt gaagacatta tcagctatgg       480
     aggacacgtg aaccgagcct gtgaagattt tcaattccag aatctcactc tcgatcattt       540
     caagtgcctg atgtttgtca gcggattgaa ggcctcgaag tacgccgatg tcagagcaag       600
     attactttca attctggaaa acgaaaagcc tgaagctcca gccactctcc agtcgttaat       660
     tgacgagtat caacgccttg tcaacctgaa ggaagacacc acgatcatcg aacagcaggg       720
     cagttcgaaa tcaatggttc acgccgtcag ggacaggaag agcgcaacgc atcagaaagt       780
     ttccgtgaag tatgaaagta agaagccgaa gtctccttgt tggcaatgtg gccaaatgca       840
     cttcgtgaag gaatgcggct acagcaccca catctgcaag gaatgtaatc acgtcggtca       900
     taaggaagga tattgttcct cctccatgaa gtctgcaaag ccatccaatt cagctcaaac       960
     agacaacagc aagaagcgga agaagggaaa atccagcgct gaaactaaag gggtattcat      1020
     cgtcaaccac attgagcatc gtgaaaagga acggaagttc gtcactatga tgatcaacga      1080
     cgttccgatc tctcttcaat tggattcagc cagcgatatt tccatcgttt cggaagcagt      1140
     ttgggaagaa ctcggcaagc cgaagatgaa accatcatca agtcaagcct ccaacgcttc      1200
     gggcgaacca cttctgctgc tcggtgagtt tgactgcaat gtaacgctaa agggcacaac      1260
     caagcgaggc cgatgtttcg tgacatccgt acgaaatctc aatctgatgg gcatcgaatg      1320
     gattgaccta ttcaacctct ggtcgattcc gtttgataca atctgcaatc aagtcgttgt      1380
     accttcaagg caagaaatcg accgagaaat tcaacaactg aagatgaacc ataaggacgt      1440
     tttcagtgaa tcgcttgggt tttgcaaccg cacgaaggtc cagctgcatc tgaagccggg      1500
     aagcaagcca gttttctgcc caaaacgacc tgttccattt cattccgttc cgatgatcga      1560
     tcaactcaat cgacttcaaa gcctaggaat cattacacct gttgattttt cggaatgggc      1620
     agcaccgatc gatgctgtca agaaaccgga tggcagagtt cggatttgcg cggattactc      1680
     gaccggactt aacaacgcac tggaagccaa caactatccg ctgcccacac ctgaagaaat      1740
     ttttgcacag ctggcaggaa gtcaatacta cagtgtgatc gacctatccg atgcatatct      1800
     gcagtgcaag gtgactgaag actccacgca acttctaaca atcaacacgc atagaggttt      1860
     gtttcgcttc aaccgcctag ctccaggtgt caagtcagcg ccgggagcgt tccaacggct      1920
     gattgaaagt cttgttgcgg acattcctgg agtccgtcta ttcatcgatg acatcatcat      1980
     tgctggtaaa gattggaaat cacacgctga atcgttgaac ctagtgctac aaaggctaaa      2040
     ggactgggga tttcacctga agatgcaaaa atgcaagttt tttcaaactg aagtccgcta      2100
     cctaggtcac attaccgacc gcagtggtat ccgtccagac ccggagaaag tgaagaccat      2160
     ttctagaatt cctccaccgc agaacatctc tgaattgcga tcgtttcttg gagccgtgaa      2220
     ctactatggt aagtttgttc caaacattca cgacctgcgt caccctttgg atcaactact      2280
     gcggaaggac gtcaagtgga attggagtgc cgattgtcag cgatctttcg aaaaattcaa      2340
     gcatgtgctg aaatccaacc ttctcttgac ccactacaat ccaaatttac caattgttgt      2400
     tgctgcagac gcatcgaaga caggaattgg agccgtaatc ttccacaagt tcccgaacgg      2460
     aagcttgaaa gccattcaac acgcttcacg ctctctcaca actgcagagc aagcatatgg      2520
     acaaccggaa aaagaagctt tagcccttgt gtatggtgta accaagtttc acaagtttct      2580
     actgggaaga agattcacgc tccagacgga tcacaagcca cttttgtcgg ttttcggatc      2640
     gaagaaaggc ataccagtgc acactgccaa ccggttgcag cgctgggctc tcatcatgct      2700
     gaattatgat ttcgacattg aatatgtttc gaccaacgaa tttggatgtg ctgacatgct      2760
     ttcccgcctc atcgaccgaa gcatgcgtcc agaagaagac tacgtcatcg cttcagtttc      2820
     gctagaagaa gatatggtaa gcattctgaa cacgacggta gaagcagttc ccgtttcagc      2880
     actccaagat gccacaaaaa agtgcaagat tctccagcaa gtaaaacggt acattctgga      2940
     cggatggcca gctgtttcca agcaagtagc ccaagaagtt caaccgtact acaaccgacg      3000
     tgaatctctc agcataatca gtgaatgcgt actgttcaag gaaagagtga tcgttccgga      3060
     gacttttcga cgacgcctgc tcaatcaatt ccaccgtggt catcctggcg tggtaagaat      3120
     gaaatcaatc gttcgcaact acgtgtactg gcccggaata gatggtgaaa ttgaagattt      3180
     tgtccaacgt tgcgttcatt gtgcttctgc tgccaaggct cctgtcaaga cgaagccaga      3240
     gccatggcct gctcctgaaa aaccgtggtc ccgcatccat atagactacg ctggaccggt      3300
     agatggcaac tactttctgg tggtcgttga tcctttcact agatggcctg aagtagtgct      3360
     gaccaaatca ataacggcaa aaacgacgat taagctcctc aagcagatgt tctcaacgtt      3420
     tggaattccc gagaccgtgg taagtgacaa cggaacacaa ttcaccggtt cggagttcaa      3480
     gaatttttgc aaatcttttg gaattcgtca catccgtacg gctccgtacc acccccagtg      3540
     aaacgggttg gcggaacgtt ttgtggacac cgtgaagaga agcgtgaaga aaattcgttc      3600
     gggaggagag tccctagaag attcactgca cacttttctc accgtatacc gctccacttc      3660
     agcacaagat ctcggaggac agtcaccagc gaagaagaag ctaggacggc caatgcggac      3720
     ggtggcagct ctattgaaac ctccagatag tcatatacgt cagaaccccg aagaaacaga      3780
     acgccagaat aatgctaccg aacgagtcca taggaacttc gaccgaggtg atacggtgta      3840
     tgcccaagtc caccaagcca attcatggtc ctggatgccc gctgtaatca tcgaacggat      3900
     tggaaaggtc aactacaacg tattactgaa ccaaggcaag cgattaatcc gttctcacat      3960
     caatcaactg aaaaaccgag ttgaagcaga aataccccgc tgtcaagaat caccactttc      4020
     cattttcttt gacgaattcg acctgccaca ggaacctgct gaattacccc caatcaacat      4080
     tcaagaacta aatgctgttc atgatcaagt tccactcgaa gaagtaccag ctttactaat      4140
     acctgcagca gaagaacctg aacaagaaca acacgaagaa cctgagccaa ctccaacaga      4200
     cgagccggaa gttcccgatc gacctagacg attacttagg cttccgtcaa aacttcaagg      4260
     atattggcta ttctaagggg gaga                                             4284
//
ID   Gypsy-21_AA-LTR repbase;    DNA;    INV; 134 BP.
XX
AC   supercont1.124;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_AA_;
KW   Gypsy-21_AA-I; Gypsy-21_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-134
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.124; Positions 1276825 1276958.
XX
SQ   Sequence 134 BP; 47 A; 27 C; 18 G; 42 T; 0 other;
     tgttacatca aggcaactca tgaaatgttg gccttgacag aacaaatcat ttttcaattc        60
     attatatgtc caaccaccaa atagaataga cgttaaacta gaaactacct ttgttttatt       120
     ctacggacgt atca                                                         134
//
ID   Gypsy-21_AnFu-I repbase;    DNA;    INV; 4411 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4411
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2906-2906 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..4398
FT                 /product="Gypsy-21_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSPEETPIIEEQRRLSQNGVLNAGVIHLQPAQHAPS
FT                 DPSPLQQTLQLLQQQLAQQQQLLSQLLQQQQQQPQPPILEQQLPPKPSNPE
FT                 LILEALAGNISEFQYDPEAGLTFEAWYARYTDLFREDASRLDDAAKVRLLG
FT                 RKLGTAEHARFSNFILPRAPRDFSFSEMVEKLTVLFGKMESVLSKRFKCFN
FT                 ISKLSTEDLLTFTCRVNKACVDAEFSSMTEEDFKCLILVCGLKDESVRDIR
FT                 MKLLAAIEDKKYSTLEQLAAECQRLVRVKADSAMIATDASERVHAMHARNN
FT                 RQWHRNVNNNERHPKLKPRSEASKPHTPCWLCGAQHWTRDCSYKTNKCRDC
FT                 GRMGHREGFCNSSQRRRGRPRFDHRRAVASRVVRVNVCSIQQKRKFVNILI
FT                 EGKPARLQLDTGSDITVISQRLWKQLGKPHLNSPKVRAKAASGEVFGLEGE
FT                 FEANVSICNITKQTTIRVSKADMSLFGADCIHLFGLGTVPMDTYCNRIGAA
FT                 ESCSWEEKFPTVFSGTGLCTKAQIHLQLRQGSRPVFRPKRPVAYAMEDAVN
FT                 EELDRLEKLGIITPCDYSDWAAPVVVVRKASGKIRLCGDYSTGLNAALHPH
FT                 EYPLPLPQDIFSKLARCVTFTQIDLSDAFLQVEIEEKSRPLLTINTHRGLY
FT                 YYNRLPPGIKVAPGSFQQIMDKMLAGVNGVSAYMDDVIVGGKTQEEHDAAL
FT                 EETLKRIMDYGFTIRREKCSFNKPEIRYLGHIIDSRGLRPDPAKIDAIKKL
FT                 PPPKDVTGVRSFIGAINFYAKFIPNMRNLRYPLDKLLLAGSVFQWTPECQK
FT                 VFEQFKALLSTELLLTHYDPKRDIVVSADASSVGLGATICHKYPDGSLKVI
FT                 QHASRALSKAEIGYSQIDREGLAIVFAVTKFHRMIYGRHFTLQTDHRPLVR
FT                 IFGSKKGIPIYTANRLQRFALNLQLYDMDIEYVPTGSFGNADVLSRLIQHH
FT                 AKPEAEYVIASLELEKDLRSVAVNALNLFPVTFGEVERATRADPLLRKVHK
FT                 YVKEGWPRDDTFGADLARYHNRKESLSTVEDCIIFGERVVIPEKLRSRCLL
FT                 QLHKGHPGMQRMKAIARSYLYWPRIDEDIVSYVASCGSCSAAAKAPPRATP
FT                 AAWPTPTGVWRRVHIDYAGPYEGFYFLVVVDAFSKWPEICKTSSTTASTTI
FT                 SMLRNIFARFGMPETLVSDNGPQFTSGLFEEFCNSNGIEHITTAPFHPQSN
FT                 GQAERFVDTLKRALRKIRSDKTSLDEALELFLMAYRSTPNAQLSQQKTPAD
FT                 EMFGRPIRTALELLRPPSSNSLSSAPSISVRKFQPGEVVSTKHFYGNSWKW
FT                 IPGRIVRSRGRVMYDVIANDGRTLRRHLNQLRRRAVDPACETHQLPLDMLL
FT                 DDWTTVSPAKQSLPIPEPITSEPAAHPPTLPDGLPPAEIPVMTSSRPSDLI
FT                 DGHDGRATRNLMDLPRRSSRVRRLPRRLGAYQLN"
XX
SQ   Sequence 4411 BP; 1179 A; 1174 C; 1119 G; 939 T; 0 other;
     gtggcgacga gttttagtgg aaacgtgcaa cgaaaagcag tgaaacgccg cagaatgtcc        60
     agcccagaag agacgccaat catcgaggaa caacgccgtc tctcacaaaa tggggtcctt       120
     aacgccgggg tcatccacct ccagccagcg cagcacgcgc catcggatcc atcgccgttg       180
     caacaaacgc tgcagctttt acaacagcag ctggcacagc aacagcagct attatcgcag       240
     ctcctgcagc agcaacaaca gcagccacag ccaccgatcc tcgagcagca gctacctccg       300
     aagcctagta atccggagct gatactggaa gcccttgcgg gcaatattag cgaattccag       360
     tatgatccag aagcaggtct gaccttcgaa gcgtggtacg cacggtacac cgacctgttc       420
     agggaggatg catctcgttt ggatgacgcc gccaaggttc ggctcctggg acgcaagctg       480
     ggaaccgccg aacacgcccg ttttagcaac ttcattttgc cgcgtgcacc gcgtgatttc       540
     agttttagcg aaatggtgga aaagctaact gtcctttttg gcaaaatgga gtcggtgcta       600
     agcaagcgtt ttaaatgttt taacatttct aaattgagca ccgaggatct gctaacattt       660
     acctgccgtg tcaataaagc gtgcgtcgat gcggaatttt cttcgatgac ggaggaagat       720
     ttcaaatgcc tcatccttgt atgtggtttg aaggatgaaa gtgtacggga catacggatg       780
     aaattgttag ccgccatcga agacaagaaa tactccaccc tggagcagct agcagcggaa       840
     tgccaacgtt tggtgcgtgt gaaagcggat agtgccatga tcgctactga tgccagcgag       900
     cgagtgcatg caatgcacgc cagaaacaac cgtcagtggc accgaaacgt taacaacaac       960
     gagcgccacc ccaagttaaa gccgcgaagt gaagcctcca aaccccacac tccgtgctgg      1020
     ctttgtggtg cccagcattg gacccgtgat tgcagttaca aaaccaacaa gtgtcgagat      1080
     tgcggacgta tgggtcatcg agaaggtttc tgcaactctt ctcagcgccg cagagggcga      1140
     ccgcggttcg atcatcgtcg cgcggtagca tcccgagtag tacgagtcaa cgtgtgcagc      1200
     atacaacaga agcggaaatt tgtcaacata ctcattgaag gaaagccggc tcgactacaa      1260
     ttagacacag ggtccgacat aaccgttatc agccagcgtc tatggaaaca gttgggtaag      1320
     cctcatctca actcaccgaa ggtaagagca aaagcagcgt ccggtgaagt tttcggcctt      1380
     gaaggtgagt tcgaagccaa tgtgagtata tgcaatatca caaagcaaac gacaattcgc      1440
     gtgtcaaagg cggatatgtc attattcggg gcggactgca ttcatctttt cggtttgggg      1500
     acggtcccaa tggacaccta ttgcaaccgc ataggagcag cggaatcatg ttcctgggaa      1560
     gaaaaatttc caacagtttt tagcggaacg ggcctgtgca ccaaggcaca aatacatcta      1620
     cagctgcggc agggaagcag accagttttt cgaccgaaac gtccggtcgc atacgcgatg      1680
     gaagatgctg tcaacgagga gttagaccga cttgaaaagc tgggaatcat tactccttgc      1740
     gactattcgg attgggcagc accagtcgta gttgttcgga aagcgagcgg caaaatacgg      1800
     ctatgcggag actatagcac cggactaaac gcagcactac acccgcatga gtatcctctc      1860
     ccgttaccac aggatatttt ctcaaaacta gcccgatgcg tcacatttac acaaattgat      1920
     ctgtccgatg catttttgca ggtggaaata gaagaaaaga gccgacccct gcttaccatc      1980
     aacacgcatc gaggactgta ttactacaac aggctccctc caggcatcaa agtagcccct      2040
     ggttcttttc aacagatcat ggataaaatg ctcgccggtg taaatggagt ttccgcctat      2100
     atggatgacg taattgtggg aggaaagacg caagaagaac acgatgccgc cctagaagaa      2160
     accctgaagc gcataatgga ctatgggttt accatccgga gagaaaagtg ctcgttcaac      2220
     aagccagaaa ttcgctacct ggggcatatc atcgacagcc gaggcctacg acccgaccca      2280
     gccaagatcg acgccatcaa gaagctccct cctccaaaag atgtcacagg cgttcgatcc      2340
     ttcatcggtg cgataaactt ttatgccaag ttcatcccca acatgcgtaa cttgcgctac      2400
     ccacttgata agttactgct agccggaagt gtgttccagt ggactccaga atgccaaaaa      2460
     gtcttcgagc aatttaaagc ccttttatcc acggaactct tgctcacaca ctacgaccca      2520
     aagcgcgaca tagtggtgtc cgccgatgcg tcttcggttg gcttaggagc aacaatatgc      2580
     cacaaatacc cagacggatc cctgaaagtg attcaacacg catcccgagc gctcagcaaa      2640
     gcagagattg gttacagtca aatcgacaga gaaggactag caatagtttt tgctgtgacc      2700
     aaatttcacc gcatgatata cggtcgtcat ttcacgctgc agaccgacca ccgaccactg      2760
     gtccgcatat ttggcagtaa aaaggggatc ccaatatata cggcaaaccg actgcaaagg      2820
     tttgcgctaa atcttcagct gtacgacatg gatatcgagt acgtgccaac tggctcattc      2880
     ggaaacgccg atgtgttatc tcggctcata caacaccacg cgaaacctga agccgaatac      2940
     gtgatcgcca gcctggagct agagaaggat ttaaggtcag ttgccgttaa cgcgcttaac      3000
     ttgtttccag ttacgttcgg agaagttgag agagctacgc gagctgaccc gttgctccgg      3060
     aaggtccata agtacgtgaa ggaaggatgg ccccgtgatg ataccttcgg agcagatttg      3120
     gctcggtacc acaataggaa agaatcgctc tctaccgttg aggattgcat catttttgga      3180
     gagagagtgg tcatcccgga gaagctgcgt tcccgttgct tgctccagct gcacaaggga      3240
     catccgggaa tgcagaggat gaaggcgatc gcgcgcagct acttatactg gccaagaata      3300
     gacgaagaca tcgtaagcta cgtggcctct tgcggatcct gttcggcggc cgcaaaagca      3360
     ccccctcgtg cgacaccagc agcatggcca acaccgacgg gcgtctggcg tagagtgcat      3420
     atagactacg ctgggccata tgaaggtttt tacttcctag ttgtggttga cgctttctcc      3480
     aagtggcctg aaatctgcaa aacatcaagt acaaccgctt ctaccaccat ctccatgctg      3540
     aggaacatct tcgctcgctt cggtatgccg gaaacgctgg ttagcgacaa cggtccccaa      3600
     tttacaagcg gcctgtttga ggagttctgc aacagcaacg ggatcgagca catcaccaca      3660
     gcaccattcc acccacaatc gaatggccag gcggagcgtt tcgtcgatac gctgaaacgg      3720
     gcactgcgga agatccggag tgacaaaaca tcgcttgatg aggcgctgga gcttttcctc      3780
     atggcgtacc ggtcgacccc aaacgcgcag ttgagccagc agaaaactcc agccgatgaa      3840
     atgttcggtc gccccatcag gacagcattg gagctgttgc ggcccccttc atcaaactca      3900
     ctatcttctg ctccatctat ttcagtgaga aagtttcagc caggcgaggt cgtttccaca      3960
     aagcatttct atggaaattc gtggaaatgg atacccggac ggatcgttcg cagccgcgga      4020
     cgagttatgt acgacgtgat tgcaaacgat gggcgtacac tcaggcgcca cttaaaccag      4080
     cttcggcgac gtgcggttga tcctgcgtgc gaaacacatc agctgcctct cgatatgctg      4140
     ctagacgatt ggactacggt ttcccctgca aaacagtcgc taccgattcc ggaacccatc      4200
     actagcgaac cagcggcaca tccaccaacg ttgcccgatg gtttgccacc agcagaaatt      4260
     ccggtgatga catcctcacg tccctccgac cttatcgacg gccacgacgg tagggccacc      4320
     cggaacctga tggatttgcc acgcaggtct tctcgtgtaa gaagacttcc gcgtcggctt      4380
     ggagcctatc agctcaatta gccgggggag a                                     4411
//
ID   Gypsy-21_AnFu-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-309
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2834-2834 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 309 BP; 67 A; 70 C; 72 G; 99 T; 1 other;
     tgttgcagcc tgatgttgca gacggatgtt gcggccgagc taagtagaga ccttatccgc        60
     acgctcgatg ttgtctggga actgacagca tccgatgcct agcgatatag tcgtctctgt       120
     ctctccctct cgctcggcac gcacttacat cccgcgatgt aatgggaats ggccttgtgt       180
     gtgtcctagt cgtcaagccg aacagacgtg gttcgctgta tcgttgttgt tttaagatta       240
     cgtttttata tgtgttttat ttattcgcat tgtccaataa agtttaagtt ttacccttaa       300
     aacacaaaa                                                               309
//
ID   Gypsy-21_AnMe-I repbase;    DNA;    INV; 5304 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5304
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6833-6833 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           457..1641
FT                 /product="Gypsy-21_AnMe-I_1p"
FT                 /translation="MWRNPNNIASDSEQESESVESGDLAHISIPIAIPLEN
FT                 LCISTMEPSVSDPNNPQGNSMGDTAIESLQKQILQLSTALNNVVASQQQSD
FT                 AARVMQNRLEQAQTLEAFYRIPDPIKIIPSFDGNKKQLFSWIQTVENALNL
FT                 FKDRIDPLLYEVYVDAVKNKIIGKARDIISAEGNPQNFEEVKNILIKSLGD
FT                 RKDLSFYMSKLWLNKMGSRRISEYYTHTKELIQKVKVIAKQNEKYKYSWDA
FT                 INEFIDETSLAAFVAGLNDSFYGYVQAAQLLDLESTYAFLCKFESFPMEHK
FT                 RTYRQQSSGNNGNTNRVQESYNKNGTRSYDYNSTDPSQPQTSKSFFQVRSP
FT                 NGMDTSTTKTRLTINRNEFNNNETFDCKQNDEGESDKILVNFWEASTKHPP
FT                 K"
FT   CDS           1596..5048
FT                 /product="Gypsy-21_AnMe-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="NFGKFLGGKYKTSSKVDYLPYILCENSVSKKEVKLLI
FT                 DSGSNKNLIKKGIIPSVEFCEETMIKNITGDYCIKTKGTINLLGHRLPDQT
FT                 YYEMNFHNFFDGILGSEYLAMTGGVLNYKNETLTIEETSLPFFKYIPAQKL
FT                 YNHIVTINTLSDGDWFVPSYQVLCKNAVIQPGLYHAKNKQTTVFIISPCSS
FT                 LPLNEKVFGINVNNFETISPIPLQDNEKLDELVIEKLIATEHLSLLEKKYL
FT                 LKTILDNQQVLLKENERLSSTSIIKHKIITKDNEPTYTKSYRFPNSFKTDV
FT                 ENQIKEMLEDGIITHSNSPFSSPIWVVPKKIDSSGKRRVRVVIDYRKLNEK
FT                 TINDRYPIPQIEEILDNLGNSTYFSTLDLKSGFHQIQMDPDYQEKTAFSTS
FT                 QGHFEFTRMPFGLKNAPATFQRAMNHILIGLIGTICFVYMDDIIVIGNNLT
FT                 SHIDNLNTVLKRLSDFNLKIQLKKCNFLKRETEFLGHIITSEGVKPNPDLI
FT                 KKIVDWKVPSTQKELKQFLGLTGYYRKFIRDYAAISKPLTKCLKKEAIVDH
FT                 TNDSYLKSFNDLKAIISSDQVLAYPNFELPFILTTDASNHALGAVLSQVQE
FT                 NHERPIAFGSRTLNKTESNYSTTEKEALAIIWAVRKYKAYLYGKKFTLITD
FT                 HKPLTFIKTSFKNSKILNWRLELEDFDYDVKYKEGKGNVVADALSRFPEVN
FT                 MNETDTSSNNENNISRNLIDSCSTVHSADDSGDYFVHVTHRPINYYKNQII
FT                 FKISDREETINEIPFPYFHRTTIIKKEFKSDDIVSLINKIHNGKQTAIYAP
FT                 TELLQLIQNTVKEKFSIKGHFIITTKTVEDVPDTDRQNFLISTEHNRAHRG
FT                 IAEVENKLRRNYFFPGMQKFIKKFVNSCEICMTEKYERKPYHIQISPRPVT
FT                 CKPLDRVHMDIYITNNCSFLSIVDSFSKHLQMFYLRNKNMAQVQQKLTKYF
FT                 ALYGIPKEIITDHETTFRSVQLRNYLSSLGVVLNYASCSESNGQVEKTHST
FT                 ITEIYNSNKHKYTGCDTKSMVRISVALYNDSIHSSTKFTPNELTFNQSNER
FT                 SEVQILENAKKLFKEAKHNLDKATKRQTSRNETKINPPNIVENQDVFVIPN
FT                 IRTKTQARAIKTKACQIKERTFENVRGIKRHKGKIKRIKTNYE"
XX
SQ   Sequence 5304 BP; 2041 A; 962 C; 877 G; 1424 T; 0 other;
     tggcgcagcc ggtaggatga attgttagaa aacaaacagt gctagtaggt gattaataaa        60
     gcttacacag tgtgtccgga tttgtgcccc ctattagata gaggtacatt ttcatctccg       120
     tgtaacgttt acaacacgga tgacttgtga caacgccgtt tccaacattt ctacaaaata       180
     gaaccagctt cttttctcta ttagaatagc tgagaattga ggttaggatt caagcgtgtc       240
     cgcacgcatc gcaggtaagc aaaatttcgg ttttaatctc ttcgtgctac gcacacatat       300
     gcgtgtatcg taatagagaa aaaaaacttt tgctgcgtgc ctcgtggtag atactatcaa       360
     ataggtctat ccgatttcat aaacgagttg ctctagaggc gcttattatt gaaaatagag       420
     acgcactatt aaatagacgt agctctaatt agttttatgt ggagaaatcc gaataatatc       480
     gcttccgatt cggaacaaga atctgaatcc gtagaatctg gcgatctcgc acacatttct       540
     ataccaatcg cgatcccttt agagaatttg tgcataagta caatggagcc tagtgttagt       600
     gacccgaata acccgcaggg aaatagtatg ggtgatacgg ctatagaatc tttgcaaaag       660
     caaattttgc agctgtcgac ggcactaaat aatgtcgttg cttcacagca gcaaagtgat       720
     gcagctagag tgatgcaaaa ccggttagag caagcacaaa cccttgaagc gttttatcgc       780
     ataccggatc cgatcaaaat tattcctagt tttgatggaa ataaaaaaca attgttttct       840
     tggatacaaa cggttgaaaa tgcactgaat ttgtttaaag atcgtattga tcctcttcta       900
     tacgaagttt atgtcgatgc agtaaaaaat aaaataatag gaaaggcaag agacattatt       960
     agcgctgagg gaaatccaca aaacttcgaa gaagtaaaga acattctgat aaaatctcta      1020
     ggtgatcgga aagatttgtc tttctatatg agtaaactat ggcttaataa aatgggaagt      1080
     agacgcattt cggaatacta cacccatact aaggaactta tacaaaaagt caaagttatt      1140
     gctaaacaaa atgagaagta caaatacagt tgggacgcta ttaacgaatt tatcgacgaa      1200
     acaagcctgg ctgcatttgt cgcgggacta aacgattcat tttatggtta tgttcaagca      1260
     gctcaactac tcgatctgga aagcacgtat gcttttcttt gcaaatttga atcttttccc      1320
     atggaacata agcgcactta tcgccaacag agttcaggca ataatgggaa tacaaacaga      1380
     gtgcaggaaa gttataataa aaatggcaca agatcatatg attataatag caccgacccc      1440
     tcacaacctc aaacatctaa atcatttttt caagttcgtt caccaaacgg catggataca      1500
     tcgactacta aaaccaggtt aacgataaac agaaatgaat tcaataacaa tgaaacattt      1560
     gactgcaaac aaaacgacga gggcgaaagc gataaaattt tggtaaattt ttgggaggca      1620
     agtacaaaac atcctccaaa gtagactatc ttccttatat cctgtgtgag aatagtgttt      1680
     caaaaaagga agtaaaattg ttaatagact caggatcgaa caaaaatctc atcaagaaag      1740
     gaatcatccc ctccgttgaa ttttgtgaag aaacaatgat taaaaatata acgggtgact      1800
     attgtatcaa aacaaaaggt acaattaatc tacttggtca tcgattacct gatcaaactt      1860
     attacgaaat gaactttcat aactttttcg atggtattct agggtcagaa tatttagcaa      1920
     tgaccggtgg tgttttgaac tataaaaacg aaacacttac aatagaagaa acttccttac      1980
     ctttttttaa atatattccc gctcaaaagc tatataatca tatagtaaca ataaacacgt      2040
     tatcagacgg tgattggttt gtaccaagct accaagtcct ttgcaaaaat gctgtaattc      2100
     aacccggatt ataccacgct aaaaacaagc aaacaactgt gtttatcatt agcccatgca      2160
     gttcattgcc acttaatgaa aaggtatttg gaataaatgt taacaatttt gaaacgattt      2220
     cccctatacc gctccaagat aacgaaaaac tagacgaact agtaattgaa aaacttattg      2280
     caacagaaca tctttcattg ctagaaaaaa aatatctatt gaaaacaatt ctagacaatc      2340
     aacaagttct gttgaaagaa aatgaaagac tatcttcaac ctctattata aagcataaaa      2400
     taatcacaaa agataatgag cctacataca caaaatcata taggtttcca aacagtttca      2460
     aaacagacgt tgaaaatcaa attaaagaaa tgcttgaaga tggtatcata acacattcta      2520
     acagtccctt ttcctcacca atctgggttg tccccaaaaa aatagattca tctggaaaaa      2580
     gaagggttag agtagtcatt gactaccgca aactaaatga gaagactata aacgatagat      2640
     accctatccc tcaaatagaa gagatccttg ataacttagg aaactcaacg tatttctcaa      2700
     ctctcgacct taaatcagga ttccaccaaa ttcagatgga tccagattat caggaaaaaa      2760
     ctgcgttttc tacaagtcaa gggcatttcg agttcaccag aatgcctttt ggcctgaaaa      2820
     acgctccagc aacatttcaa agggctatga atcatatctt gatcggttta attggaacaa      2880
     tttgctttgt atacatggat gatataattg ttattggaaa taacttaaca tctcatattg      2940
     ataaccttaa tacagtgctt aaacgtttat cagatttcaa tctgaaaatc caactaaaaa      3000
     aatgtaattt tctaaagaga gaaactgaat ttttgggaca tataattacc tccgaaggcg      3060
     ttaaaccgaa cccagatttg ataaagaaaa tcgttgattg gaaagttccg tcaacacaaa      3120
     aagagttgaa acaattcctt ggattaactg ggtattaccg aaagtttatt cgagactacg      3180
     cggcaatatc caaaccatta acgaaatgtc taaagaaaga agcaatagtc gatcatacaa      3240
     atgattcata cttaaaatca ttcaatgatt tgaaagcaat tatctcatca gatcaagttt      3300
     tagcttatcc aaattttgaa ttacctttta ttcttacaac cgacgcaagt aatcatgcgt      3360
     taggtgccgt tctatcgcaa gtgcaagaaa atcatgaaag gccaatcgca tttggaagta      3420
     gaacactgaa caaaactgaa agcaattatt caaccaccga aaaagaggct ttagcgataa      3480
     tttgggcggt aagaaaatac aaagcatatt tgtatggtaa aaaatttact ctcattaccg      3540
     atcacaaacc cttaacgttc ataaagacct catttaaaaa ttcaaaaata ttaaactgga      3600
     gactcgagct agaagatttc gattatgacg taaaatataa ggaaggcaaa ggaaacgtag      3660
     tagctgatgc tttaagccgt tttcccgaag taaatatgaa tgaaacagat acttcttcaa      3720
     acaacgaaaa taacatatct agaaatttaa tagatagctg ctctactgta cactccgctg      3780
     atgattctgg cgattacttc gttcatgtga cacatcgccc aataaactat tacaaaaatc      3840
     aaatcatatt caaaatatca gatagggaag aaaccataaa tgaaatccct tttccgtatt      3900
     ttcatagaac aacaataata aaaaaagaat tcaaatctga tgatattgtt agccttatca      3960
     acaaaattca caacggaaaa caaacagcaa tatacgcacc aaccgaacta ttgcaactga      4020
     tccaaaatac tgtaaaagaa aaattttcga ttaaaggaca cttcataatt acaacaaaaa      4080
     cagtagaaga cgttccagat acagataggc aaaattttct aatatcaact gaacacaata      4140
     gagcccatcg aggaattgca gaagtagaga ataagctacg acgtaattat ttttttccgg      4200
     gaatgcagaa attcataaaa aaatttgtaa acagttgtga gatctgtatg acagaaaaat      4260
     acgaacgaaa gccttaccat atacaaatat caccacggcc agtcacatgc aaaccattag      4320
     atcgagtaca tatggacatc tatataacta ataattgcag tttcttgtct attgtagatt      4380
     cattttcaaa acacctccag atgttctact taagaaacaa aaatatggct caagttcaac      4440
     aaaaactcac caagtatttt gcgctttatg gaattcccaa agaaataata acggatcatg      4500
     aaactacttt tagatctgta caactgagaa attatctatc ttccttaggc gtcgtactga      4560
     attatgcgtc gtgctctgag tcaaacggac aagtagaaaa aactcacagc accataacag      4620
     aaatttacaa ttccaacaaa cataaataca ctggatgtga tacaaaatcc atggtcagga      4680
     tatcagtagc attatacaat gactcgatac actcatctac aaaattcact ccaaacgagc      4740
     tgacatttaa ccaatctaat gagcgaagtg aagttcaaat actagaaaat gcaaaaaaat      4800
     tgtttaaaga agcaaaacat aatttagata aagctacgaa aagacaaaca tctagaaacg      4860
     aaactaagat aaaccctcca aatatcgttg aaaatcaaga cgtttttgta atacccaaca      4920
     tacgaacaaa aacccaggca agagcaatca aaacaaaagc atgtcaaata aaagaacgaa      4980
     cttttgaaaa tgtaagaggc atcaaaagac ataagggaaa aattaaacga attaaaacaa      5040
     actacgaatg aaataacgaa tagtattagg tgatcctcta atatttttgt caacaaaaat      5100
     ttatgaaaaa gataaatcag taaaaatctt tcattactaa gtaaaattag taccaactgt      5160
     taaggtcttt gctaagatag gaaataagta gaaataagat cgaactatta taacgtattt      5220
     gaaaaaaaaa agagaaagag aaaaacttct aattgtgaat gcatgcaacg agccgaggac      5280
     gtctcttctc taccccccag agta                                             5304
//
ID   Gypsy-21_AnMe-LTR repbase;    DNA;    INV; 149 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-149
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6858-6858 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 149 BP; 40 A; 41 C; 27 G; 41 T; 0 other;
     attacgtatg cgtaaccctg cattccgcgt aaccctgtaa ccgcattcta catcaccatc        60
     accaacgaca tcggatttgg ggatcgacat tcggttttga tcggtataat aaagaggtta       120
     tctcaaactc actccgctcg acttgcaat                                         149
//
ID   Gypsy-21_AnSt-I repbase;    DNA;    INV; 4898 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4898
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 804-804 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..4856
FT                 /product="Gypsy-21_AnSt-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MPREIEREREHFDQHVSWRSPSVRSDSDTETDSNSSI
FT                 KSVTMENQIVEQLKQLTLGLSQINERLNIQEQSIKCTQEQICAQAHQVNHV
FT                 EPTTTCKVEDFYRIPDPIKSLPTYDGNRKQLTAWLDTAESTLNLFKDRVNS
FT                 EVYGVYVTAVCNKIEGKAKDTICVAGNPKDFDEIKIILIDAIGDRRELSTF
FT                 KCQLWRHTMTEGMTIHKYYQQAKEIIQNIKSIAKQERDYRDNWTVINKFID
FT                 EDGLAAFVAGLKKPYFGYAQAARPKDIEDAYNFLCKFKSQEVNSNRMNSQP
FT                 PPSSPYKQVQQSRPNFGNYSRAQSGYLKKPDNQYPQPMDVDNSMRTKHTSY
FT                 NRTVNNTETTNNSENNSKFSTGHFDRKSDLKESLNFLPYITVYDSSLDRTI
FT                 RLLIDSGANENILKPGIISNCEDNCSATISNVFGNHATSKKATCQLLGKQI
FT                 KPQTYFIYNFHNYFDGLIGSKFMAETNTVINYHTNTITIQGIKTKFKKYYA
FT                 DKYFHHTITVTTDRSGDWFVPTFQRIDQDTIIEPGMYSSLNNKSTINVLST
FT                 KKIPPEITTLKITVNNFETISPIPFDSNTIPNKSMIEQLIRTDHLSNFEKE
FT                 QVINTILKHHRVLLKNNEKLTSTTIIKHKINTKDDIPVYTKTYRYPHVYKQ
FT                 DVEAQIKEMLETGIIKPSKSPYASPIWVVPKRKDASGIQKVRVVIDFRKLN
FT                 EKTISDKFPMPEIEDILDSLGKSQYFTILDLKSGFHQIEMHPDHQEKTAFS
FT                 TSYGHFEFTRMPFGLKNAPASFQRTMNNILAELIGKICYVYLDDIVIVGNS
FT                 LETHLENVSTVLERLAQFNLKIQLDKCEFLKRETEFLGHTISPDGIKPNPD
FT                 KVKKILNWPLPSNEKQIRQFLGLSGYYRRFIRDYSKITKPLTKYLKKGQLI
FT                 DIKDPEYIDSFIKLKEIIASDQILAYPDFNLPFILTTDASNFALGAVLSQV
FT                 QNKIERPIAFASRTLNKAETNYSTIEKEALAIIWAIRKYKPYLYGNEFKLF
FT                 TDHKPLTFIKTSLKNNRILNWRLELENYQYNVEYKQGRTNVVADALSRKIE
FT                 APNEINANSTTTLDTNHSADTSDHFYIKSSERPLNYYRNQIIFEKGNQHQD
FT                 LIETPFAHYRRIIIKRREYDENTITNILQKYHNGKQTAILAPKCIISLIQS
FT                 SFKNHFSCCGYMIMTHSQVKDVTSVEEQNQLIAKEHERAHRGINEVESQMK
FT                 RSFFFPKMHEQIKSAVNTCTVCNKNKYERRPYNIKISPRPTTEKPMERVHM
FT                 DIFSINSNSFLSLVDAFSKFAQMIPIETKNLIDVKSALAKYFSNFGIPRQI
FT                 VTDHETTFRSIQLKQFLSSLGVTLTYASSSESNGQVEKTHSTIIEIYNTNK
FT                 HKFLNMNTPDIIAISISLYNATVHTATDYTPNEILFNQLNHTNPIVIKELA
FT                 EKLFSQVKTKIELSRQKQMKGNNNKEEPPLIQEGQHVYVKPNIRKKLDERA
FT                 KITTAQNVKDRTFENSKHVKRHKNKIKRTKAA"
XX
SQ   Sequence 4898 BP; 1868 A; 911 C; 843 G; 1276 T; 0 other;
     ggcgctgtag acagttcagg aagtgcttaa aaacagtgga atagaattgg attaataatc        60
     ctttctaaag tggttcccgc aatttgcacc ggcagctaaa ggattgaatc cgttgtttgg       120
     ttcgaggacc ccccggcata acctgcacca cacgtaagta aaactttttt attagtttta       180
     ctaacgcata ctcgatacta caagataggt cgataattgc aaaaagtgtt tataattgta       240
     gttattttcg ttataaacac gtggtgcgag acaattcatc gagtcttctc cacacacaca       300
     tccaaccagt actactagat aggctgagcg gacattggca ttagtattat cactcgtgat       360
     aatagatgcc gagagagatc gaaagagaaa gagaacattt tgaccaacac gttagctggc       420
     gttcacctag tgttaggtca gattcggaca cagaaacaga ttctaacagt tccataaaat       480
     ccgtaacgat ggaaaatcaa attgttgaac aacttaagca gttaacttta ggtctatctc       540
     aaattaatga gagacttaat attcaggaac aatctattaa atgcactcag gaacaaattt       600
     gtgctcaggc tcatcaagtg aaccacgtgg aacctaccac tacatgcaag gttgaagatt       660
     tttataggat ccccgatccg atcaaatctc ttcctactta tgacggtaac agaaagcaac       720
     tgaccgcatg gcttgatact gctgagagca cattgaacct tttcaaagac agagtgaata       780
     gtgaagtgta tggtgtgtac gtaacagctg tttgcaacaa aatcgaagga aaggcaaaag       840
     acacaatttg tgttgctggt aacccgaagg atttcgatga aattaaaata attttaatcg       900
     atgccattgg agataggcgt gaactttcga cttttaagtg tcaattgtgg cgacacacaa       960
     tgacagaagg aatgacaata cataagtatt accaacaggc taaagaaatt attcagaata      1020
     ttaaatcaat tgcaaagcaa gaaagagatt atagggacaa ctggacagtg atcaataagt      1080
     tcatcgatga ggatggtttg gcagcttttg tggcagggtt gaaaaaacca tacttcggtt      1140
     atgctcaagc agctcgccca aaggacatag aagatgcgta caattttcta tgcaaattta      1200
     aatcgcagga agtaaattcc aatagaatga acagtcaacc acctcccagt tcaccatata      1260
     agcaggttca gcaaagcaga ccaaattttg gtaattattc acgagcacaa tcgggttatt      1320
     tgaaaaagcc tgataatcaa tatccgcaac caatggatgt tgacaattcc atgagaacaa      1380
     aacacactag ctacaataga acggtcaata acactgaaac tacgaataac agtgaaaata      1440
     attcaaaatt ttcaacgggc cacttcgata gaaaatctga cttgaaagaa tcattgaatt      1500
     ttttgccata cataactgtt tacgacagct ctttggacag aactatacgg ttacttattg      1560
     atagtggagc aaatgaaaat attcttaaac caggaattat ttccaattgt gaggataatt      1620
     gctctgctac aatatcgaat gtttttggaa atcatgctac gagcaagaaa gcgacatgcc      1680
     aattgttagg aaaacaaata aaaccacaaa cgtatttcat ttacaatttc cataattatt      1740
     ttgatggact tataggctca aagttcatgg ccgaaactaa tactgtaata aattaccata      1800
     ctaatactat cactatacaa ggtataaaaa ccaaattcaa aaaatattat gctgacaaat      1860
     attttcatca cactataaca gtaacaactg atcgcagtgg agattggttt gtgccaactt      1920
     ttcaacgaat tgatcaagat acaataatag aacctgggat gtattcttca ctaaacaata      1980
     aatccaccat taatgtgtta tcaacaaaaa agatccctcc agaaattaca acgcttaaaa      2040
     taactgtaaa taattttgaa acgatttcgc ccattccgtt tgattctaat accattccaa      2100
     acaaaagtat gattgaacaa ttaattagaa ctgatcattt atcgaatttt gaaaaagagc      2160
     aagttatcaa caccattttg aaacatcatc gagtactttt aaaaaataat gaaaaactca      2220
     cgagtaccac cataataaaa cacaaaataa atacaaaaga tgatatcccg gtgtacacta      2280
     aaacttacag atatccacac gtatacaaac aagacgtaga agctcaaatt aaagaaatgc      2340
     tagaaacggg cataattaaa ccttcaaaga gtccttacgc atctcctatt tgggttgttc      2400
     caaaaagaaa agatgcatca ggaatacaaa aagttagagt tgtaatcgat tttcggaaac      2460
     taaatgagaa gacgattagc gataaattcc ctatgcctga aattgaagat atcctggata      2520
     gcttgggtaa atcacaatat tttacgatat tggatcttaa atctggtttc caccagatcg      2580
     aaatgcatcc cgatcatcaa gaaaaaactg cattttccac aagttacggt catttcgaat      2640
     ttactagaat gccttttggg ctaaaaaatg caccagcttc atttcagcgc acaatgaaca      2700
     acattttagc agagcttatc ggtaaaattt gttatgttta cttagacgat atcgtaattg      2760
     ttggaaacag tttggaaacc catctggaaa acgtttcaac agtattagaa cgattggcac      2820
     aatttaattt aaaaattcag ctggacaaat gcgagttctt aaaaagagaa acagagtttc      2880
     ttggacatac aatctctcct gacgggataa aaccaaaccc tgataaagta aagaaaattt      2940
     tgaactggcc attgccctca aacgaaaaac aaatccgaca atttctgggt ttatctggat      3000
     attatcgtcg atttattaga gactattcaa agattacaaa accattaact aaatatctta      3060
     aaaaagggca gttaattgat atcaaagacc cagaatacat tgattccttt atcaaattaa      3120
     aagaaataat agcgtcagat caaatacttg catatcccga tttcaatcta cctttcatac      3180
     taactacgga tgccagtaac tttgctttag gagcagtact ttcacaagta caaaacaaaa      3240
     tcgagaggcc aattgcgttt gctagcagaa cattgaataa ggcagaaacg aattattcta      3300
     ctatagaaaa agaggcactc gcgattattt gggcaatccg taaatataaa ccatatcttt      3360
     atgggaatga gttcaaactt tttaccgatc ataaacctct cacgtttatt aaaacatctt      3420
     taaaaaacaa tagaatacta aattggaggc ttgagctaga aaattaccaa tacaatgtcg      3480
     aatacaagca gggaagaaca aacgtggtag cagacgctct tagtagaaaa atagaggctc      3540
     caaatgaaat taatgccaac agcacaacta cccttgatac aaatcattca gcagatacgt      3600
     cagaccattt ttatataaaa tcaagcgaaa ggcctttaaa ctattaccgc aaccaaataa      3660
     tatttgaaaa gggcaatcaa catcaagatt taatagaaac accgttcgca cattatagaa      3720
     gaattattat aaaaagaaga gaatacgatg aaaatacgat cactaatatt ctgcagaagt      3780
     accataacgg aaaacaaacg gccatattag ctccaaaatg tatcatatca ttaatacaaa      3840
     gttctttcaa gaatcatttt agttgctgtg gttacatgat catgacacac tcacaagtca      3900
     aagatgtgac gtcggttgaa gaacagaacc agcttatagc aaaggaacac gaaagggctc      3960
     accgtggcat aaatgaagtt gaaagccaaa tgaagcgatc gttcttcttc cccaagatgc      4020
     atgagcaaat caaatccgca gtcaacacgt gtactgtatg caataaaaac aaatacgaac      4080
     ggaggccata taacatcaaa atatcgccga gaccgacaac agaaaagcca atggaacgtg      4140
     tccacatgga tattttttcc atcaactcga atagtttcct ttcgttagta gatgcgtttt      4200
     cgaaattcgc tcaaatgatt cctatagaaa cgaaaaactt gatagacgtt aaaagtgcac      4260
     tggcaaaata tttcagtaat tttggaatcc caagacaaat agttactgat catgaaacga      4320
     cgttcagatc catacagcta aaacagttct tgagcagttt aggcgttact cttacatacg      4380
     catcatcctc agaaagtaac ggacaggtag aaaaaacgca ctcaacaata atagaaatct      4440
     acaacacgaa caaacacaag tttttgaaca tgaatacgcc agatattatc gccatatcga      4500
     tttcgttgta caacgcaaca gttcatactg caacagacta cactccaaat gaaatattgt      4560
     ttaatcaatt gaatcataca aatcctattg taataaaaga actagcagag aaactattta      4620
     gccaggtgaa aacgaaaatt gaactatcaa ggcaaaaaca aatgaaagga aacaataaca      4680
     aagaagaacc acctttgata caggaaggcc agcacgttta tgttaaaccg aatatcagga      4740
     aaaaattaga tgaaagagct aaaataacta cagcacaaaa tgtaaaagat aggactttcg      4800
     agaactcaaa acatgttaag aggcataaaa ataagatcaa aagaactaaa gccgcttagg      4860
     aatacgtccg aggacgtccg tctttcgccc cggggacg                              4898
//
ID   Gypsy-21_AnSt-LTR repbase;    DNA;    INV; 260 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-260
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 817-817 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. ATAT TSDs.
XX
SQ   Sequence 260 BP; 78 A; 37 C; 61 G; 84 T; 0 other;
     aattatgtgg tataatcacg cgcacttaac gtatagcgtt gctgctggta taactggtat        60
     aagaccagca gagttagagt gatagagttg aaggtacgcg ttcgaagcga gtaaagctgc       120
     acgttcttct ctctcggaac gccaaacagt gaacatctag attgcgatac ttagagctat       180
     tataaaatta gggtttttta acgttaggtt tagttagttt agatgtagtt gtaggttagg       240
     cttatcaata aattataatt                                                   260
//
ID   Gypsy-21_CQ-I repbase;    DNA;    INV; 4318 BP.
XX
AC   AAWU01010825;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_CQ_;
KW   Gypsy-21_CQ-LTR; Gypsy-21_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4318
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 421-421 (2011).
XX
DR   GenBank; AAWU01010825; Positions   48709   53026.
XX
CC   Positions [3456-3929] - Integrase core
CC   'TGTA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           261..4318
FT                 /product="Gypsy-21_CQ-I_1p"
FT                 /translation="MYDREKLQKLTVKELRELCAKKKVSVSGRKAALVNRL
FT                 LETVRESDSESDDSLFSALDVMSSTKKEKKNATAAKKEDAPRASQFTFNDI
FT                 GDSLEKFSGESADSDVCEWLEEFEKACETFGWNDVQKFVYGRRLLSGTAKL
FT                 FVQSSTGLNDWGTLKNALEEEFEVKVSSAEIHELLRGRKKKSDESFLQYIY
FT                 HMQSIAKRGHIDEETVCEYVVRGIVDDPVNKVGLYGARTLAELKERVKQYE
FT                 KMKSQMRDVSRSAKVFVKSERAKKSETPRTARSEKSESAHTASDGVRCYNC
FT                 GSRGHYANDCEAKSRGPKYFVCSEYGHRARECPKKEVRERKEDSELHTVAE
FT                 TKMPVVEIAVGNSLLRTLFDTGSRYNVLCVSAHKKIGEPPMNTTPMIFRGF
FT                 GAAETRACGTVTIDVCVDGETYPSMMFYVVPTGSMSYDAILGMQALHHLDV
FT                 CVKPDGVVFKKKCEAQEEVESDEVNDLMALTSGKSGVTLDVAPRYAAEVGK
FT                 LVADYKPKSEVRSRVETRIILSDETPIHIAPRRFAPKEKKILEKTIDEWLK
FT                 AGIVKESVSEFASPVTLAPKKDGSMRVCVDYRQLNKRIVKDCFPMRNIEDQ
FT                 VDKLKSAKVFTTLDLKNSFFHVPVEVSCQKYTNFVTHAGQYEFEKTPFGLS
FT                 NSPASFSRFVADVFREQIRKGHMMIYVDDVIIPSATEEENIVVLKEVLAVG
FT                 AENGVQFNWEKSQFLKSEVEYLGYVISGGGYKVSPAKIKAVKNYREPKSAK
FT                 EVQRFVGLTSYFRKFIPGYALIARPLTSLLKKEAQFVFGETQRRSFEKLKE
FT                 CLVSDPVLKIYDPDAETELHTDASKEGYGAVLLQKSDDGRFHPIYYMSKQT
FT                 TSAEKNYSAYLLEVLAVVRAVERFRVYLLGVPFKIVTDCVAFKHTVKAKKL
FT                 NPTVAKWVIALDEHKYHVEHRAGSRMKHVDALSRAPVMLTVSDPLVEMIKS
FT                 AQQRDERLRAITELLKTQEFEDYFVNGDVLMKVVNGREVVVVPAELQGEVI
FT                 KQAHENGHFGVRKLEEVIKSDYYIHQLTTKINRQIECCVKCILAEKKRGKT
FT                 DGLLNPIAKGEVPFDTYHVDHLGPMDVTEKQYKYLFVVVDAFSKYVWIYPT
FT                 KTTNAQEAIQRLRQQSELFGNPRRIVSDKGAFTSHDFKEYCAEQNIVHVEV
FT                 TTGVPRGNGQVERVNQVILAMLTKLSVHDKTKWYKHVANIQRWINASFHQT
FT                 TGVSPFEAMFGVQMRHEGDLRLSELLEEIKVAQFDDQRNEIRAKARESIEK
FT                 AQEEQRRSYNLRAKQAPNYREGDVVAIKRTQFGPGKKYAAEFLGPYKVTKV
FT                 KPNNRYDVEKICGEGPRKTSTAASHMKLYRVRSPEPLQDDR"
XX
SQ   Sequence 4318 BP; 1149 A; 971 C; 1407 G; 791 T; 0 other;
     tgggggctca accacgattt cccgcgagtt gttgagctga gtgagagtgt ttccgcgtgc        60
     caaatcgcga aaagttggca tttggctgat ggcgtcacca gagtccgcca ttttgcctga       120
     gtgaagaagg aacgtgtgtg cgtgtgtgtg acgaacgaga gagttcacac ataccacagt       180
     gagaaacgag actccgcgag tagtgagaga agagagagca tctccgcact cgtagtgcaa       240
     gtgtgttagt gaggcgaacg atgtacgacc gggaaaagct tcaaaagcta acggtgaaag       300
     agctgcgcga gctgtgcgcg aagaagaaag tgtcagtgag tggcagaaaa gcagcgctgg       360
     tgaatcggtt gctggaaacg gttcgcgaaa gtgattccga gagcgacgac tcgttgtttt       420
     cggcgctcga cgtgatgtcg tcaacgaaga aggaaaagaa gaacgcgacg gcggcgaaga       480
     aagaggacgc gccgcgggca tcgcagttca ccttcaacga catcggagac tccctcgaga       540
     agttctctgg ggaaagtgcc gacagtgatg tgtgcgagtg gctggaagaa tttgagaaag       600
     cttgcgaaac gtttgggtgg aatgatgtgc agaagtttgt gtacggcaga cggctgctga       660
     gtggcaccgc gaagcttttc gtgcagagtt cgaccggatt gaatgactgg ggcacgctga       720
     agaatgccct ggaggaagag tttgaagtca aagtgtcaag tgccgagatc cacgagctgc       780
     tgcgtggccg aaagaagaag agcgacgaaa gctttctgca gtacatctac cacatgcaaa       840
     gcatcgcaaa gcgcggccac atcgacgaag aaaccgtgtg tgagtatgtg gttcggggca       900
     tcgtcgatga tcccgtcaac aaagtaggcc tgtacggtgc acgcacactg gcagagctga       960
     aagagcgtgt gaagcagtac gagaagatga agagccaaat gcgcgacgtg agccggagcg      1020
     caaaagtgtt tgtgaagagc gagagagcga agaaaagtga gacgccgcga acggcgagaa      1080
     gtgagaagag tgagagtgca cacacggcga gcgacggcgt tcgttgctac aactgtggaa      1140
     gccgaggcca ctacgcaaac gactgcgagg cgaagtcgcg tgggccgaag tatttcgtgt      1200
     gtagtgagta cgggcatcga gcgagagagt gtccgaagaa ggaggtgcga gagagaaagg      1260
     aagactccga gctgcacacc gttgccgaaa cgaagatgcc agtggtggag attgcggtgg      1320
     gcaattctct gctgcgtacg ctgttcgaca cgggtagccg ttacaacgtg ctgtgtgtga      1380
     gtgcgcacaa gaaaatcggt gaaccgccga tgaatacgac gccgatgatc ttccgtggtt      1440
     ttggtgctgc cgagacgcga gcgtgtggca cggtgacgat cgatgtgtgt gtcgacggcg      1500
     agacgtaccc gagcatgatg ttttacgtcg tgccgactgg atcgatgtcg tacgatgcga      1560
     tcctgggtat gcaggcgttg caccacctgg atgtgtgcgt gaaaccggac ggagtcgtgt      1620
     tcaagaagaa gtgtgaggcg caggaggagg tggagagtga tgaggtcaat gacctgatgg      1680
     cgttgacgag cggaaaaagt ggcgttactc tcgacgtggc gccgcggtat gctgctgaag      1740
     tgggaaagct ggtcgcggat tacaagccga aaagtgaagt gagaagccga gtggagacgc      1800
     gaatcattct gagcgatgag acgcccattc acatcgcgcc gcgacgattt gcgccgaagg      1860
     agaaaaagat tctggagaag accatcgacg agtggttgaa ggctggaatc gtcaaggaaa      1920
     gtgtgagtga gttcgcgagt ccagtgacgc tggccccgaa gaaagatggt tcgatgagag      1980
     tgtgtgtgga ctaccgccag ctgaacaagc gcatcgtgaa ggactgcttt ccgatgagaa      2040
     acatcgagga ccaagtggac aagctgaaaa gtgccaaagt gttcaccacc ctcgatttga      2100
     agaactcctt cttccatgtg ccagtagaag tgtcatgcca gaagtacacg aatttcgtga      2160
     cacacgccgg gcagtacgag ttcgagaaaa ccccgttcgg gctgagcaac agtccagcga      2220
     gcttcagccg ttttgttgcg gatgtgttcc gtgagcagat ccggaagggg cacatgatga      2280
     tctacgtgga cgacgtgatt atcccgtccg cgacggagga ggagaacatc gtcgtgctga      2340
     aagaggtgct ggctgtgggt gcagagaacg gagtgcagtt caactgggag aagtcgcagt      2400
     tcctgaaaag tgaggtcgag tatctgggtt acgtgatcag tggcggaggc tacaaagtgt      2460
     cgcccgcgaa gatcaaagca gtgaagaact accgtgagcc gaaaagtgcg aaggaagtgc      2520
     aacgttttgt gggactaacc agctacttcc gtaagttcat ccccggatac gcactgatag      2580
     caagaccctt gacgtctttg ctgaagaagg aagctcagtt tgtgttcggc gagacccaga      2640
     gaagaagctt cgagaagctg aaagagtgcc ttgtgagtga cccagtgctg aagatctacg      2700
     atcccgacgc cgagaccgag ctgcacacag acgcctcgaa ggaaggttac ggagctgtcc      2760
     tgctgcagaa gagtgacgac ggtaggtttc acccgatcta ctacatgagc aagcagacga      2820
     cgagtgccga gaagaactac agcgcgtacc tcctcgaagt gctagctgtc gtacgtgccg      2880
     tggagagatt ccgcgtttac ctgctgggag tgccgttcaa gattgtgacg gactgtgtgg      2940
     cgttcaaaca taccgtcaag gcgaagaagc tcaacccgac tgtggcgaag tgggtgattg      3000
     cgttggacga gcacaagtac cacgtggaac accgcgctgg gagcaggatg aagcacgtgg      3060
     acgccctgag tcgagcacca gtgatgctga cggtaagtga cccgctagta gagatgatca      3120
     agagtgcaca gcaaagagac gagaggttgc gagcgataac cgagctgctg aagacgcaag      3180
     agttcgagga ctactttgtc aacggagacg tcctgatgaa agtggtcaac ggtcgcgaag      3240
     tcgtcgtagt tcctgccgag ctacaaggag aggtgatcaa gcaagcgcac gagaacgggc      3300
     actttggtgt gcgcaagctc gaggaagtga tcaagagcga ctactacatt catcaactca      3360
     ccacgaagat caatcgccag atcgagtgtt gtgtgaagtg catcctagcg gagaagaagc      3420
     gcggcaaaac cgatggtttg ctgaacccga ttgcgaaggg cgaggtcccg ttcgatactt      3480
     accacgtcga ccaccttggc ccaatggatg tgaccgagaa gcagtacaag tacctgttcg      3540
     tggttgtgga tgcgttctcg aaatacgtgt ggatctaccc gacgaagacg acgaacgcac      3600
     aagaagccat ccagagattg cgccaacaga gcgagctgtt cggaaacccg agaagaatcg      3660
     tcagtgacaa aggagcgttc acttcgcacg acttcaagga gtactgtgcg gaacagaaca      3720
     tcgtacacgt ggaggtgaca acaggcgtgc cgagagggaa tggtcaagtc gagagagtca      3780
     accaggtgat cttggcgatg ctgacgaagc tgagcgtgca cgacaagacg aagtggtaca      3840
     agcacgtggc gaacatacag cggtggatca acgcgagttt ccaccagacc accggagttt      3900
     ccccgtttga ggccatgttc ggagtgcaga tgcgtcacga aggcgacctg cgcttaagtg      3960
     agctgctgga ggagatcaaa gtggcgcagt tcgacgatca gcgaaacgag atccgagcga      4020
     aggcacgaga gtccatcgag aaggcccaag aagaacagcg acgatcgtac aacctgcggg      4080
     cgaagcaagc cccaaactac cgagaaggcg atgttgtggc gatcaagcga acgcagtttg      4140
     gccctggcaa gaagtatgcg gccgagttcc tcggtccgta caaggtgacg aaggtgaagc      4200
     cgaacaaccg ttacgacgtc gagaagatct gtggggaagg cccacggaag acgagcacag      4260
     cggcttccca catgaagctg tatcgggtcc ggagcccgga acctcttcag gatgaccg        4318
//
ID   Gypsy-21_CQ-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   AAWU01010825;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_CQ_;
KW   Gypsy-21_CQ-I; Gypsy-21_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 422-422 (2011).
XX
DR   GenBank; AAWU01010825; Positions   48502   48708.
XX
SQ   Sequence 207 BP; 55 A; 51 C; 58 G; 43 T; 0 other;
     tgtcggtggc gagagcgaga ccgatgccga cgaggattag agcgagactg cagacccgag        60
     gtcggccgat cgcttgacga cgagcagcga gcagagttcc ttcgaccgcc gcgagaatcg       120
     gacgtcaaag tgttgtcgcg tgtactcagc cggaaatctt aatattaaac tatcttaaac       180
     taaacaaacg tgttttgctt taccaca                                           207
//
ID   Gypsy-21_DAn-I repbase;    DNA;    INV; 5494 BP.
XX
AC   AAPP01019356;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DAn_;
KW   Gypsy-21_DAn-LTR; Gypsy-21_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5494
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019356; Positions  159892  165385.
XX
CC   Positions [4564-5055] - Integrase core
CC   'GAAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           746..2164
FT                 /product="Gypsy-21_DAn-I_2p"
FT                 /translation="MMGLDRSPNRRVGSASNSLCSICQVDISSANAYTTTC
FT                 QHEFHRECIEAHWKNSEKCPVCESACRATASKTAEKVARETRSRSKATQPV
FT                 NNPLDEGPSTSIRSSSNNNTNSSIITANAVTLLAMERRMLATLSEKMSELI
FT                 QNAFSESVNRVTLTPSPAQPQLQDQVPRVFDRVETPRSPASQRTVASELLT
FT                 RPDKVVHILNGWKIKFSGEGMSVDNFIYRVEALTRQMLDGNFTVLCRNCSV
FT                 LFEGKANEFYWRYHKAYGEISWEDFCAALRLQFRHSRDDNDIEELIRMTKQ
FT                 KPNESFDSFYDNISGLIDQLEQPWVSSKLVRVLKSNLRPEIRHEILNLEIK
FT                 TVSELREICRRREAFLADVKRCSGYTKVVPFRREVAEFGDEMVDLQESEPE
FT                 GEAGVEAFSLKCWNCQSEGHRYQDCLSERRVFCYGCGAANTYKPSCSKCSK
FT                 NFKQGISKSQYKQKTSYASRNQSTMTDQ"
FT   CDS           2071..5424
FT                 /product="Gypsy-21_DAn-I_1p"
FT                 /translation="MFKKLQARHIEVAIQTEDFICQSKSVHNDRPIEDTLQ
FT                 RVSLSSPDEQIVPDSSLLHSKISKLRDVAIHEVQKIANVAKRNSRRLKAFW
FT                 KNVKRCKDSLKHINSIPAGTRDPRPFLPVRLLDRVVYGLLDSGASISCIGG
FT                 ELAKEVIKNKEYRAIKGSAATADGKSQNIVGVLNIDVEYGNDKKPLKLYVV
FT                 PSLKQDLYLGIDFWKLYDLLPTHLKISEIESAKAVRPDEVDQHDLSEDEKA
FT                 KLANTINCFPSFTQEGLGRTNLITHTIDVGMAKPIKQRHFPVSPAVEKAMY
FT                 TEIDRMLQLGVIEESESAWSSPIVMVTKPGKVRICLDCRKVNSFTEKDAYP
FT                 LPQINGILSRLPKAEFITSLDLKDAYWQVPLDVQSRDKTAFTVPGRPLYQF
FT                 KVMPFGLCNATSTMSRLMDKVVPAHMRNEVFIYLDDLLIVSASFEDHLEVL
FT                 RELALHIRRAGLTINIGKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITNF
FT                 PLPKSLKNLRSFMGMCGWYRKFVPNFASLSAPLTDLMTTKRKFILTEEAIR
FT                 AFERLKQCLSEAPVLCSPDFAKPFAIHCDASKTGVGAVLVQVSDEGDERPI
FT                 AFVSKKLNKAQKNYTVTEQECLAAIVALKNFRAYVEGLKFKIITDHASLKW
FT                 LMSNHDLSSRLARWSLALQRYVFEIEHRKGSLNVVPDVLSRVNEEAVAAID
FT                 LTEGLIIDLNSESFKSEEYINLIKRVEENKLNFPDLKVEDGYLYRKAEHLT
FT                 GEQVHDEYAWKLWLPKELVPKVLSLAHDSSLASHGGVHKTIERIRRYYFWP
FT                 GLVSDVRAYISACEVCKCTKAPNCVLRPPLGRAPETQRFFQRLFVDFLGPY
FT                 PRSRSGNVGIFIVLDHFSKFVFLKPVRKIDSSVIVKYLDSELFMTFGVPET
FT                 IVSDNGSQFRSKAFRGLMQEYSINHTLPAVYSPQANASERVNRSVISAIRA
FT                 YIRPDQKDWDEVLNRISCALRSSLHSSLGTSPYYMAFGQHMVTSGSTYSLL
FT                 RRLNLLNDRSLRFDRQDSFEIVRKQACEQMYRKHEENKRRYDLPTRNVTYT
FT                 EGQEVYRRNFKQSCFQAGYNAKFGPMFVKSRIRRKIGNLYYELEDLQGKVV
FT                 GTYHAKDIRQ"
XX
SQ   Sequence 5494 BP; 1693 A; 1053 C; 1240 G; 1508 T; 0 other;
     gataattatt tattattaat taagaaaaag tggcgcccaa cgtggggcct tagtgaataa        60
     attcaagttc attaagactc gcgaaggaca taatttcaga aactctttca tttcttcgtt       120
     acttcaaaat ttcacctttc taaattttcg attgtgttcg aattcctgga attcatgccg       180
     aaagaatatc agtattcaaa gctgaccgga attagaccat aaagcggaaa tttcctacct       240
     caagcagaag tgactggagt tttcagtcgc aggaaaacag attaaaaaaa tcaaaacttc       300
     ggttgatttt ctgtccgcga tcggcaaaaa ccaatcactg agctactcga actattctat       360
     gaaggaagtt atcgatgaac aaagaggaaa atactggcac aacttgcgag aagtgtcgta       420
     tcccatcttc gtaacttctg aatctaaatt ctaactactg gaaggaaaac ttgtttacac       480
     tggaatacga gtgtaggagt acaccgtcca aaatttacgt agaaagaaag gattatcttt       540
     cgaataagtt taagtcaatt tgaacgaatt ttcttccaaa ctccatacac cttttgagaa       600
     atgtaagaaa agagaatgac aatatcgttg gggacgagaa caacaagcta agggttcagt       660
     ttatataaat tttattgagt tataattttt ctttattata ttgagatatt tttcgtgtgt       720
     cacatttttt gagaattatt tgagtatgat ggggttagat cgatcgccga ataggagagt       780
     cggaagtgcc tcaaattctt tgtgttctat atgtcaagtt gacattagtt cagcaaacgc       840
     atatacaaca acatgccagc acgaattcca cagagaatgt attgaagctc attggaagaa       900
     cagtgagaag tgtccagttt gcgaatcggc atgtagagcc acagcctcta aaaccgccga       960
     aaaagtagct cgagaaactc gaagtagatc taaagctact cagccggtta ataatccatt      1020
     agatgaggga ccttctactt caatacgaag ttctagcaat aataatacga attcaagtat      1080
     tattacagcc aacgcagtca ctttgttagc catggagcgg aggatgttag ccactctctc      1140
     tgagaagatg tctgaattaa tacagaatgc tttctcggaa agtgtgaatc gagtgacgct      1200
     cacaccaagc ccagctcagc cccagctcca agatcaggtg ccaagagttt ttgatagagt      1260
     cgaaactcca cgctctcctg cttcccaacg cacggttgca tctgaattac taacgcggcc      1320
     agataaagtg gttcacattc tcaatggttg gaaaattaaa ttttctggag aaggtatgtc      1380
     tgttgacaat tttatttata gggtcgaagc cctcacgagg caaatgctgg acggaaactt      1440
     taccgttttg tgtaggaact gcagtgttct attcgaaggg aaagccaacg agttttattg      1500
     gcggtaccat aaggcgtacg gtgaaatctc ttgggaggat ttttgtgcag ccttacgact      1560
     tcaattcaga cacagtagag atgataatga catagaggaa ttaattcgaa tgactaaaca      1620
     gaaaccaaac gaatccttcg atagcttcta cgacaacata tcaggactaa ttgatcagtt      1680
     agaacagccc tgggtgtcga gtaaacttgt ccgagtactt aaaagtaatc ttcgtcctga      1740
     aattcgccat gaaatcctga atctggaaat aaaaacggtg tccgaattaa gggagatttg      1800
     taggcgtcgc gaagcatttc tcgctgatgt caagagatgt agtggataca ctaaggttgt      1860
     tccttttagg cgtgaagtag ctgaatttgg agatgaaatg gtagatctcc aagaatcaga      1920
     acctgagggt gaggcaggag tcgaagcctt ttccttaaaa tgctggaact gccaaagcga      1980
     aggacatagg tatcaagatt gtctctcaga aagacgtgtt ttttgttacg gatgcggtgc      2040
     ggctaacacg tacaagccaa gttgcagtaa atgttcaaaa aacttcaagc aaggcatatc      2100
     gaagtcgcaa tacaaacaga agacttcata tgccagtcga aatcagtcca caatgaccga      2160
     ccaatagagg acactcttca aagggtatct ctctcttccc cagacgaaca aatagtccca      2220
     gatagctctc tgcttcacag caaaatttca aagttaaggg acgtcgcaat ccatgaagta      2280
     caaaagatag ctaacgtagc taaacgaaat tcacgaaggt taaaggcttt ttggaaaaat      2340
     gtgaaaagat gcaaagacag tttgaaacac attaattcca tacccgcagg aactagagat      2400
     cctcgaccgt ttctaccggt tcgattgctc gatcgagttg tatacggttt gttagattcg      2460
     ggagcttcga ttagttgcat agggggagaa ttagctaagg aagtgataaa gaataaggaa      2520
     taccgagcca taaaaggcag cgctgcgaca gcagacggga aatcccaaaa tatagtagga      2580
     gttctaaaca ttgacgtaga atacggcaat gataagaagc ctttaaaact gtatgtcgta      2640
     ccttcactca aacaagattt atatcttggc atagactttt ggaagttata cgatcttctt      2700
     ccaacacatt taaagatatc ggaaatagaa tcggctaagg cagtccgccc agacgaggtg      2760
     gatcaacacg atttgtcgga agacgaaaaa gctaaattgg caaataccat aaattgtttt      2820
     ccttctttta ctcaggaagg attaggcagg acaaatttga taacccacac tattgatgta      2880
     ggaatggcga agcccatcaa acagcggcat ttccctgtat ctcctgcagt cgaaaaggca      2940
     atgtatactg aaatcgacag aatgttgcaa ttgggtgtga tagaggaatc ggagagtgca      3000
     tggtcctccc cgatagtaat ggttactaaa ccagggaaag ttagaatatg tttagattgc      3060
     cggaaagtca atagcttcac ggaaaaggac gcgtatcctc ttccccaaat aaatgggatt      3120
     ttgagccgat taccgaaagc agagtttata actagcttag acttaaagga tgcttattgg      3180
     caagtgcctt tagatgttca gtcgcgcgat aagactgcgt tcacggtacc aggtagaccg      3240
     ttataccaat ttaaggtaat gccgtttggc ttatgcaatg ctacgagcac catgtctcgt      3300
     ttaatggaca aggtagtgcc agctcacatg aggaacgaag tttttatata tttagatgat      3360
     cttctaatag tatctgcaag ttttgaagat catctcgaag ttctcaggga gttagcattg      3420
     cacattaggc gtgcaggttt gacaatcaac attggcaaaa gtcacttctg catgcggcga      3480
     gtgcgttatc taggtcatat aataggtgac ggcggaatcc gtacagaccc agaaaaggtg      3540
     tctgcgatta ccaactttcc tttaccaaaa agcctaaaga acttgagaag ctttatgggg      3600
     atgtgtggat ggtatcggaa attcgtgcca aattttgcgt ctctgtctgc tcctttgaca      3660
     gacttgatga cgacaaaacg aaagttcatc ttgaccgaag aggctataag agcgtttgag      3720
     aggctaaagc agtgtcttag tgaagcacct gttttatgta gtccagactt cgcgaagccg      3780
     ttcgctatac actgtgatgc cagcaaaaca ggcgtaggag cagtattagt gcaggtttca      3840
     gacgaaggcg acgagagacc gattgctttt gtttcaaaga aattgaataa agctcagaaa      3900
     aactacacag tcactgaaca agaatgttta gctgctatcg tcgctttaaa gaattttaga      3960
     gcgtatgtgg agggtttgaa attcaagata attacagatc atgcttcttt aaagtggttg      4020
     atgtcgaacc acgatttaag ttcccgatta gctcggtggt cgttagcgtt acaaagatac      4080
     gttttcgaga tcgagcatcg caagggttca ctaaacgttg ttcccgacgt tttgtctcgc      4140
     gtgaacgaag aggcagttgc tgccatagat ttgacggaag gacttattat tgatctaaat      4200
     tccgaatcat ttaaatcaga ggagtatatt aatctgataa agagagtgga agaaaataaa      4260
     ctaaatttcc ctgatcttaa agtggaagac ggttatttgt atcgtaaagc ggaacactta      4320
     accggggaac aggtacatga cgaatacgca tggaagcttt ggttaccaaa ggaattagtg      4380
     cccaaagttc tttctctagc tcatgatagc tctttggcct cgcatggagg cgtacacaaa      4440
     actatcgaga ggattaggcg atactatttc tggcctggtc tcgtttcaga cgtaagagcc      4500
     tatataagtg cttgtgaggt ttgcaaatgc acgaaagcac cgaattgtgt tctcagacct      4560
     cctttgggaa gagcaccgga gactcagcgg ttctttcaaa ggcttttcgt tgattttctc      4620
     gggccttatc ctagatcgcg aagtggaaac gtgggcattt ttatcgtcct cgatcacttc      4680
     tcaaagtttg ttttccttaa acctgttagg aagattgatt ctagcgtcat tgtgaagtat      4740
     ctagacagtg aactgtttat gacttttgga gtccctgaaa cgatagtgtc agataatggg      4800
     tcccaattta ggtcgaaagc gtttcgagga ttaatgcagg aatatagcat taatcatact      4860
     ctgcctgctg tttattcacc tcaggctaac gcctcggagc gtgtaaatag atcggtcata      4920
     tccgccatta gagcgtatat acgcccggat cagaaggatt gggatgaagt tctgaacagg      4980
     atatcctgtg cgctgaggtc ttctctacac tccagccttg gaacaagtcc gtactacatg      5040
     gcttttggac agcatatggt tacctctggt tcgacctatt ctctgctccg acgtttaaat      5100
     cttttgaacg atcgttcgct acgatttgac aggcaggatt ctttcgaaat agttcgcaaa      5160
     caagcttgcg agcaaatgta tagaaagcac gaggaaaaca agaggcgcta tgatctcccc      5220
     actcgtaatg ttacgtatac tgaaggtcaa gaggtatatc gacgtaactt taagcaaagc      5280
     tgctttcaag ctggctataa cgccaaattc gggccaatgt ttgtaaaatc tcggattcga      5340
     agaaagatcg gtaacctcta ttatgaactg gaagaccttc aaggaaaagt tgtaggtact      5400
     taccacgcta aagacattcg acaatagctt cagtcggaat cagtctagtg tattctctcg      5460
     atcataccct agtctgattt tagcgggggg gttt                                  5494
//
ID   Gypsy-21_DAn-LTR repbase;    DNA;    INV; 2492 BP.
XX
AC   AAPP01019356;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DAn_;
KW   Gypsy-21_DAn-LTR; Gypsy-21_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2492
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019356; Positions  157400  159891.
XX
SQ   Sequence 2492 BP; 856 A; 402 C; 428 G; 806 T; 0 other;
     tgtactggcg actgaagcca aagaaaaatt caaatggttt tatatttggc gccaaagatc        60
     gtaagcgtag attaccgatt aggtaaacta agagttgcca tccgagatgc agcttcttat       120
     cagctgtatg caggtatgca ctgaaaagct ctatttacct atgatggcgt aaggttggat       180
     cgacatagat ttccgctcta ggagcttaga ttcttttcga ttcaacctcc atagcagaaa       240
     gacctgtgca cgtaagtttt cttgccttgg catgtgggtg tttactcaca gagaggttaa       300
     aatttttttt ttgggttatt tcttcagatt acccagataa acctgcctaa tctgccaacc       360
     cacccaagga aggaagaaaa ataggaaccc tcaggagtta ctggccttac tcaggaaaat       420
     ccccctccac gtgcctcatc catcggcccg gcatccaggt gaagcaagcc ctgagccggc       480
     ccagcgatca tcaagtgtcc cgcggagcgc cttattcatc ccatcgaggg atcggcaact       540
     ccgtgggcca gcagttttag ttgtgacagt gggcgaaaaa gcctagtggg agtgaaaacg       600
     tgaatttaac ctaaaatccc caaaacctcg tgcacactga ggaaaatata agacaaaaaa       660
     aactataatg aaaaaatatt aaataataaa gattaatgct tgcgagctac aaaaaaacaa       720
     aaacgtgaac gaaaaatgtg cagaaacgaa aattaaaatt tatttttttt tggttatacc       780
     aaaattttct aagtgaaata cactacaaac aatgaagtga gaattctaat gaacaaacct       840
     taaaatatga ttaagctaaa acagtgctaa aaaaataaat attataaaag aactaaatgc       900
     gaaggtgaaa acgaaaacct aaaagaaaat gttaaaagga aagataaata gttaaaaatg       960
     ttataaataa ataataagtt aaaaaaatgg gaaaatttat ataaataaag ttaaaatgtg      1020
     aaagcgtgcg gcaaagagaa attagaaagg ctcctcgaaa tttaaattgt taatttctat      1080
     ttttattttt attttttttg atttttttct tttttatttt tgttttggtt gctgagtttg      1140
     gtttgaaaag agcaagaagc actgaaagaa aagctctgat gtgttacaaa aaaaaaaaaa      1200
     aaatttaaat tatttgcgtc tccgaatttc ccgaaaatta tgggaaaagc cccccccaaa      1260
     attccgtttt ttcagcacgc cagcgcggga gatcgatctt tcgtcatgga aatgcaagtg      1320
     agtttgtttt cttaatttat atttactttt tacaacacaa aaaattaact gcatgaaatt      1380
     atcgtttttt ttttgttgtt ggtgtaagtt acattctcac taaaacgaat tttgcgaaat      1440
     agaaagatgg aaaaaaaaag aagaatcaaa gaacggttat atttacagcg agcttatctt      1500
     ttagtcagcg agctttggct acactgagag aaattttgga tgaattttat ttaatttaat      1560
     attattgaaa taaaaatgat tagagattac agatgagaat gaaaacctga aaataattta      1620
     gataaaacaa aatttttaaa tacactgaaa aaaaatatgt ttgaaaattt tataaaggct      1680
     taaaaaaaaa aattattttt tcctttaaat attaaatgaa taacgtcaaa taacaataga      1740
     aattaaattt atttttccga atattgccgc caagttattg ccacgtttgg gataggaatt      1800
     taaatttttt gtttattttt ttttttatta attaagccgt tactttaaca ttttttatat      1860
     cttctaacat taatacattt ttctaaatat tcctttatat ttagttttaa tttattgtta      1920
     tgattactat ttttctacat tttacaatat ttgatattaa tctttgggta taatttccta      1980
     tcgcacaaaa caaaacatgt atcttttaat tattaccttt tataacgttt gaagaaataa      2040
     taatataatg aataactaaa cttataactg aaccatgctg ttgtttctca gatcctagga      2100
     tatgaaggga tcctcagagc catgctcgag cggagaggat cgtaggtcgg gtagggcatg      2160
     aagcgtacac atttcagcag tgtatcgcaa tttttttttt attttctctc ctctttctct      2220
     ttccctttct tctggtttct ctgaaattgt ccttctgttc ttccggttat cgtttagctc      2280
     tagatatttt cacaggtttc ctgtttgagt attttttttt tgtcgcagca cgctaaattc      2340
     gatttctaat taataataat gtgtagtagg cgtgggattc tgtacggagc aagaccacca      2400
     ccccccaagc cgacgagtca gagccggaaa agtaaagcgt gccccgcaag tgcagaatcc      2460
     cggattgatc actactaccg ttacacgtta ca                                    2492
//
ID   Gypsy-21_DAzt-I repbase;    DNA;    INV; 5735 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5735
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 801-801 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           847..2469
FT                 /product="Gypsy-21_DAzt-I_1p"
FT                 /note="RING zinc finger."
FT                 /translation="MVVSRSTENLAVSNDTGLHCQICSGVIVYQAQLLSAK
FT                 CGHNFHRVCFVSKVSNKKECPVCQHGLSVGSASSENLSPSGPSTSSSRKPS
FT                 VSQSLQTRSQKKKSEALIHSEMPNTEDANMSQVSGDTQQSQPSMAETMQQS
FT                 IVDAIRVAMVEQTRILATSMADQTNQLVRAISDGLQSASSLPPANVATARM
FT                 QPVTEIEQQTMEQLFRLSTSEQLPVPGFSQAVNNSSPVIPGLSNLGQIRNV
FT                 GSEISGVSAVSPLRADRVSQIMSNWKLRFTGKASMSIEDFIYRIEALTKQT
FT                 LDGNFDITARHASNLFDGSASEWFWRYHKSVSEVRWKDLCVALRGQFKDDR
FT                 TDRNIRTEIELRKQRPNESFDDFYGTIAALADKLSEPMSEAALVETLRANL
FT                 VADIQHEILYESAATVKSLRHLVRTREIFMQSIAKSKPPLAAPRAFPRRQV
FT                 NAILDESINKNVEELSEEEDLDVSAIELVCWNCGGKGHRYQECMAERRIFC
FT                 YGCGRADTYKPSCRKCNPSTTKNSMSRAPPKSARKHLVNQATNTE"
FT   CDS           2379..5660
FT                 /product="Gypsy-21_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MQSQHYKKLDVACTTEKCTQTSGQSSDQYRVSKCAVS
FT                 TEPIIPDLTNSVFADPLDRPLNRSQRRRTVFKKKIRRERSLLLASVVGRPH
FT                 DLRPHAQIMLFDKPVVGLMDTGASVSCIGGNCASEVLQSGIKYKPLSLKVK
FT                 TADGKSQSIIGKVSTKVTYRGESKELCFYIVPSLTGDLYLGIDFWTAFDLL
FT                 PLHLLTKNLVVETLEDATVRNLLPSQQVLLQEVVNSFPSYAKHGLGKTSVV
FT                 THTIDVGDAKPVKQRHYAVSPATERLMYEELDRMINLGVVQESNSSWSSPV
FT                 VLVRKPGKVRLCIDCRKVNSFTVKDAYPMPLIDGILSRLPKAEFVTSIDLK
FT                 DAFWQIPLDQNSRDKTAFTVPGRPLYEFVVMPFGLTNASCTMSRLMDKIIP
FT                 ANLRNEVFIYLDDLLVISDTFDRHLKVLSLVASQLTSANLTINVEKSKFCR
FT                 KEVKYLGHVIGGGNIRTDPEKIAAVKDFPVPQSIKQVRRFLGMTGWYHKFI
FT                 RNYAAISSPISDTLKSKRKFIWTEEAQLAFESLKSQMCSAPVLHSPDFSKP
FT                 FSLHCDASHTGVGAVLMQKNSDNADVPIAFMSKKLNKCQRQYTVTEKECYA
FT                 AVLAVKKFRAYVEGQQFTVITDHASLKWLMSQADLSSRLARWSLKLQGFEF
FT                 EILHRKGTDNIVPDALSRIHTEDLSSLSMNSMMVDLDSPEFKAPEYLTMKN
FT                 KIRLSGVSLPDIKVENDLIFRRAEHSDDSKISDDSCWKLWVPPSLVETALK
FT                 AAHEDPLCAHSGINKTLERLRRYYYWPNLAADVKKFVNNCHICKATKHPNQ
FT                 PLKPPMGSTGLPSRCFQKLFVDFLGPYPRSRSGNIGIFVVLDHLTKFPFLK
FT                 PVRKFTAESVKRYLEEDIFHCFGIPETIVSDNGVQFKSQSFNSLLDKYNIT
FT                 HTYTAIYSPQANASERVNRSVLAAIKSYVDPDQQNWDEKLSSICCALRSSH
FT                 HLAINTTPYRLAFGQHMVTDASSYKLMRTLNMLEDRAVQFSREDSFDIIRS
FT                 RAKDSMQAQHTRNARAYNLRTRNIFYRDGQEVYRRNFQQSNFAKGFSAKLA
FT                 PNFIRSRVRRKLGNCYYELEDLQGRLVGKFHAKDIKP"
XX
SQ   Sequence 5735 BP; 1608 A; 1259 C; 1305 G; 1563 T; 0 other;
     tattttattt tggcgcccaa cgtggggccc gatccggcct gccccgatta taaacaaata        60
     ctccagtcgt accacctgac tgttaccttt gctaagtcgt tttttttgtg ttacttttcc       120
     tgctccagtt accctgggga taccgtggat ccgtgtaatc gagacatgga ttacatggcc       180
     tagtatcgta tagggcgtaa tgtagtgtag gagttccgac actctggaag tgttgtaact       240
     ttaattggtt ataactccaa ggtcagcgct tagcctagcc tctcatacct cagtgagtct       300
     taggaactaa gtaagaaccc tacacgtagc tcgagcaatt ctgaggaagt tttactgaga       360
     ttgtcctacc tggccgtgat gttgatgttc cagccaccct gtgaaaattg ctgaatagcg       420
     aggttcagta agcctaggtg atttttgggc tccgcaaacg acataatagg tagttgacac       480
     ggtccagcag ctcaccagtg ttatatgcgt ttaatctgtc ctcttagttt cctccggatg       540
     agggatcgtt gactgtatat gtcaagtcct gccgagaact aagcttagga ttcacataga       600
     tgtagataac aaaatacccc attcctgtct tttcccttcc cgtaaacagt gcaatccttt       660
     attgttctat tcttacccaa aggcgtttgc atggctcctg aattattttt gactatatct       720
     acttatatct attgagtttg ttttcttgtt ttggtgtatt atatactata tacattatat       780
     cttttttttg ttgagttaca agcagttagc agtgatttaa taatatcttt tggttcccaa       840
     accgaaatgg ttgtatctcg tagcacggag aatttagcgg tctcgaatga cactgggtta       900
     cattgtcaaa tttgctcagg agtgattgtt tatcaggctc agctgctgtc ggccaagtgc       960
     gggcataact ttcacagagt gtgtttcgtc tctaaagtta gtaataagaa ggagtgtccc      1020
     gtttgtcagc acggcctaag cgttggatcg gcatcgtctg agaatcttag tcctagtggt      1080
     ccctctactt caagttcacg aaagccatca gtttctcagt ctcttcagac tagaagtcaa      1140
     aaaaagaaat ctgaagcgtt aatccattcg gagatgccga acacggagga tgccaacatg      1200
     tcacaagtct ctggcgatac tcaacagagc cagccatcca tggcagaaac tatgcagcag      1260
     tcgatagttg atgcaattag agtagctatg gtagagcaga cccgaatttt ggcaaccagc      1320
     atggctgatc agactaacca actagttcga gccatctctg atggtcttca aagtgcatcg      1380
     tcattacccc ctgcaaatgt agctacagct cgtatgcagc cggtgactga aatagagcaa      1440
     cagacaatgg agcaactttt ccgtctatca actagtgaac agttaccagt gccagggttt      1500
     agtcaagcgg taaataattc ttcaccggtt atacccggat tatcgaactt agggcagatt      1560
     cgaaatgttg gatccgaaat ttccggagtt tcagcagttt cacctcttcg tgctgatcgt      1620
     gtaagtcaga taatgtctaa ttggaaacta aggtttacag gaaaggctag tatgtctatt      1680
     gaagacttca tttaccgtat tgaagcatta acaaagcaaa ctttagacgg taactttgat      1740
     ataacggccc gacacgctag taatcttttc gatggaagcg ccagcgaatg gttttggcgt      1800
     taccacaaaa gcgtctctga agttcgttgg aaggatttgt gcgtagcctt gagagggcaa      1860
     tttaaagacg ataggacaga taggaatatc cgaaccgaga tagagttgag aaagcagcgg      1920
     ccaaacgagt catttgatga cttttacggt actattgcag ccttggcaga caaactgtct      1980
     gaacccatgt ccgaggcagc cttggttgag actttgcgag caaatcttgt ggctgatatt      2040
     caacatgaga ttttgtatga gtctgctgcg acggtgaaat ccttgcgtca ccttgtccga      2100
     acgcgagaaa tttttatgca gtccatagca aaatcaaagc ctccccttgc tgcaccacgc      2160
     gcttttccac gccgccaagt gaatgctatt ctagacgaat ccataaacaa aaatgtggaa      2220
     gagttgtctg aagaggagga tcttgatgtt tcggcaatag agttggtgtg ttggaattgt      2280
     ggtggcaaag gccatcggta ccaagaatgt atggcagaac gcaggatatt ttgttatggc      2340
     tgtggcaggg cagatacata taagcccagt tgtagaaaat gcaatcccag cactacaaaa      2400
     aactcgatgt cgcgtgcacc accgaaaagt gcacgcaaac atctggtcaa tcaagcgacc      2460
     aataccgagt aagtaagtgt gccgtttcca cggaacccat tataccagat ttaacaaaca      2520
     gcgttttcgc tgatcccctt gatagacccc taaaccgatc ccagcgtcgc agaacagtat      2580
     ttaagaagaa aattagacgt gaaaggagtc tgcttttggc ttcggtagta ggaagacctc      2640
     atgacttacg accccatgct cagattatgc ttttcgataa accagtagta ggtctaatgg      2700
     atactggagc ttcagttagc tgcataggag gcaattgcgc ttccgaggtt cttcagagtg      2760
     ggatcaagta taagccactc tcactgaagg taaaaactgc agacggaaaa agccaaagta      2820
     taatcggcaa agtatccaca aaagtcacgt acagagggga atccaaggaa ctctgtttct      2880
     acattgtacc ttctctgacg ggtgatctat atctaggaat tgatttttgg acagctttcg      2940
     acctgttacc tttgcatcta ttgacaaaga acttagttgt agaaacttta gaagacgcta      3000
     cagtgaggaa tcttctcccc tctcagcaag tgctactcca ggaggtagta aattcatttc      3060
     catcatacgc taaacatggt ttaggcaaga cctcggttgt tacgcacact atagatgtgg      3120
     gcgatgcgaa accggtcaaa caacgccact acgcggtgtc gcctgcaact gaaaggctaa      3180
     tgtatgaaga gttagatcgt atgatcaacc tgggagtagt acaagagtca aatagctcgt      3240
     ggtcttcgcc cgtcgtgttg gtcagaaagc ctggcaaggt taggctgtgt atcgactgca      3300
     gaaaagtaaa ctcatttaca gtgaaggatg cttatccaat gccgcttata gacggaattc      3360
     tgagtagact accgaaagct gagttcgtca ctagcattga tctaaaggat gcgttttggc      3420
     aaatacccct tgatcaaaac tctcgtgaca agacagcgtt caccgtccct ggccgtcctt      3480
     tatatgagtt tgtcgtcatg ccatttggtc ttaccaacgc atcttgtacc atgtcgcgtc      3540
     tgatggacaa gattattcca gctaatctgc gaaatgaagt ctttatctat ttagacgacc      3600
     tgttggtaat ctcagatacc ttcgatcgcc atttaaaggt gttatcctta gtcgcttccc      3660
     aactcacttc tgctaaccta accataaatg tggagaaaag caaattttgc agaaaagagg      3720
     tcaagtactt ggggcacgtg attggtggcg gaaatattcg cactgatccc gaaaaaatag      3780
     ctgccgtaaa ggactttccg gtgccccagt cgatcaaaca agttcgtcga tttttaggaa      3840
     tgacgggctg gtaccataag ttcatccgca attacgcagc tatcagttca ccgatatctg      3900
     acactctgaa gtctaagcgc aagttcatct ggacagagga agctcagctg gcgttcgagt      3960
     ctttgaaatc tcaaatgtgc tctgcgccgg ttctacatag cccagacttc tctaaaccat      4020
     tctccttaca ttgtgacgcc agtcatacgg gcgtaggtgc agttcttatg caaaaaaaca      4080
     gcgataatgc cgacgtaccg attgctttta tgtcgaaaaa gcttaacaag tgccagcggc      4140
     aatacacagt aacggaaaaa gaatgttatg ctgctgtatt agccgtaaaa aagttcaggg      4200
     catatgttga aggccaacag ttcaccgtca tcacagatca tgcgtccctg aagtggctga      4260
     tgtcgcaagc tgacctcagc tcccgtttgg ctcgttggtc attaaaactg cagggatttg      4320
     agttcgaaat cttacacaga aagggaactg ataatatagt ccccgatgcc ctatcccgta      4380
     tacacactga agacttatct tccttgtcca tgaatagcat gatggttgac cttgattccc      4440
     cagaatttaa ggcccccgag tatctgacga tgaagaataa gattcgtttg agtggtgtca      4500
     gtttacccga tataaaagtc gaaaatgatc ttatctttcg tcgtgcagaa cattcagatg      4560
     actcgaagat ctcagacgat tcttgctgga agctttgggt cccaccatct ttggtagaaa      4620
     ccgctctgaa agccgcccat gaggatccct tgtgtgcaca cagtggaata aacaaaaccc      4680
     tcgaaagact caggcgatat tattattggc cgaacttggc tgcagatgta aaaaagttcg      4740
     taaataattg ccatatctgt aaagccacaa agcatccaaa tcaacccttg aaacctccaa      4800
     tgggaagtac gggattgcct tctcggtgct ttcagaagct atttgtagac ttcttaggac      4860
     cgtatccgag aagcagatct ggcaatattg gaatatttgt tgtcttagac cacctgacga      4920
     agttcccatt tttgaagccg gtgcgcaagt tcacagccga atcagtaaaa cgatatttgg      4980
     aagaagacat attccactgt ttcggcattc cggaaactat cgtatcggat aatggagtcc      5040
     aatttaaatc ccagtcgttc aactcgctgc ttgacaagta caatattacg cacacatata      5100
     ctgccatcta ttctcctcaa gccaacgctt cggagagagt aaatagatct gtgcttgcgg      5160
     ctattaaaag ttatgtggat ccagatcaac agaattggga tgagaaacta agtagcattt      5220
     gctgtgcgct tcggtcgagt catcatttgg ccataaacac tactccttat cggcttgcct      5280
     tcggtcagca tatggtgacc gacgccagca gctataagtt gatgcgtacc ctgaacatgc      5340
     ttgaagatcg agcagtccaa ttttctcgag aggattcctt cgacataatt cgaagcagag      5400
     cgaaagattc catgcaggct cagcacaccc gaaatgcgag ggcttataat ttgcgaacaa      5460
     ggaacatatt ttatagggac ggacaagagg tgtataggcg caactttcag caaagtaatt      5520
     tcgctaaagg cttcagtgcg aagctggcac caaactttat caggtcccga gtgcgaagaa      5580
     agctagggaa ctgctactat gagcttgaag atctacaagg tcgccttgtg ggcaaatttc      5640
     atgcaaagga tataaagcct tgactagact cagaacaagc gcggatccca cttcggtgtg      5700
     tttcacccca agcgtgatct aagtgggggg gaatt                                 5735
//
ID   Gypsy-21_DAzt-LTR repbase;    DNA;    INV; 2652 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2652
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 825-825 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2652 BP; 831 A; 635 C; 566 G; 620 T; 0 other;
     tgtagtgcgc ttgtttcaag cagaaaagtc gaagtgaaaa ataactaaag ttccgcctaa        60
     aagaacactg taaaaagagt tagggggcgg aataaagaag agcttttcgc acgccatctg       120
     gcgcatgcaa tttgtcgccg tgagcagagc ttaatcttgt cgcgtaatct tttagggctg       180
     acgttcgtct ctacgttttt tcctttgatt gacatttggg aggacgaaga agaaagcagt       240
     aatggagggg tcgatcccta aatttccggc taagatcgat ctctcttctc gtggccttca       300
     agtaagatag acgtgccctc gtgcccttat taccacatag tcacataacc aagtcaaacc       360
     ggcacgtgag aaaaaaatat aaaaaagaca gaaccgccag catatcgcca acggctcctg       420
     caccgcaagc gcctccgacg attgccaacg gctcctgcaa cgcatgcgcc gccgacaaat       480
     cgccaacaaa tcgccagtgg ttcctgcaac gcatgcgccg ccgacaaatc gccaacatat       540
     cgccaacggc ccctgcatcg caagcgccgc cgacaaatcg ccaacgaatc gccaacggcc       600
     cctgcaacgc aagcgccgcc gaaggatcgc caacggctcc tgcatcgcaa gcgcctccga       660
     catatcgcca acggcccctg catcgcaagc gccgccaaca aatcgccaac aaagcgccag       720
     tggctcctgc aacgcaagcg ccgccgaagg atcgccaacg gctcctgcat cgcaagcgcc       780
     tccgacatat cgccaacggc ccctgcatcg caagcgccgc cgacaaatcg ccaacaaagc       840
     gccagtggct cctgcaacgc aagcgccgcc gaaggatcgc caacggcccc tgcatcgcaa       900
     gcgccgccga aggatcgcca acggctcctg catcgcaagc gcctccgaca tatcgccaac       960
     ggcccctgca tcgcaagcgc cgccgacaaa tcgccaacaa atcgccaacg gcccctgcaa      1020
     cgcaagcgca cgtgcggccc cagtagcgca agcgcaagtg aaaatttttt tttgtgcaca      1080
     atcaaataga attggcggcg aaaataaaag cccatgtgta cctgatgcat gtaaaacagc      1140
     tgggcgctgg acaaggcatt gacctctggc tcgtaaattt tttgttgctt tgctgatggt      1200
     cgcagaactc tgcgctgagc tttttctttt tatgctagac ttaatatgat cggacataca      1260
     tagattgaat aaaaacgtgt gaagtgatat caaaaattga gacaaagaaa gaaattagat      1320
     ataaaaatta gtgaaagggt aaagtgaaaa tgaacaaaga aagaaagaac gtgaattaaa      1380
     ggcgagacga gtgcataact cacataacca aaagcatcaa cggcgagaat tctcggctgt      1440
     gactgtgtac atacatatat gtgtaactac ttttcagtga tttcttaaag cttacaggtt      1500
     cgcaccatcg ccgaaagatc ttttggacat ggatgcagca acaattgggt gagcgattat      1560
     attgtttatt aaacgaaaaa gaaaaaaaaa tagacatttt gggacacatg tgtgtatgtt      1620
     tgccatggca agtttatttt gttgttgtaa tttggtggtt gttgccgaag aagcttaagc      1680
     ccgatcaggt gctctagagc tttcgaagct tcctcaaagc tcgaaacttc atcttgagct      1740
     ttacacctat gtgcctcaat tgagcgccaa gtaattttcg aatcgccttt aagtcgagta      1800
     aaaggaaaat aaaataaaaa agaaaaaaaa agtaaaagaa ggaaaaatga taatgataat      1860
     aatagatgaa atttgctttc acttatgttc acgtatactc atataaaaaa aaaaaaaaaa      1920
     atgaataaaa taattttttt tgattagcat tagccatatt cttacttaca cgtaaattac      1980
     cttattcact tatataaaaa aaaaaaaaaa gaaataagaa tttttcgatt attaactgta      2040
     cgctactcat actcatatat acatacatct tttacagcta tattcccttt tattgtttat      2100
     atgcccttgg cttactttat tacttcatta aatacttata acgaacatta agaaaaaatg      2160
     aatttgtaaa ataatttatt taggagccat gcaggcaaca atgggggaaa gacgtagtgg      2220
     agatggttga cgtggcaaca agggatcatc cgtaacatat acctgtatcg gcggatggat      2280
     gatcatggtt gggtgggcaa ggctgttgca gcaacaccag cacagcagat tgccatgtca      2340
     agcgaaggtt gcatgtgttt agttaccctg tacaggtgaa tcctgtcttc tcctttctcc      2400
     ctacccgtac cttttcccct cctgatcctc gtgttaattt aaaacgtatt tagcaaagag      2460
     aagcacgcga agataatagt aaatagaatt gagtaacgaa gcgagcacgt agcgatagca      2520
     agatgttaga acccactcct actaccgatc atacagccgg agccagcgcg tgcatttttc      2580
     agcgtcgact acacccccca ccagctcgag tggcaccgcc acagcaaccc aagttgtagg      2640
     tgaaatgtta ca                                                          2652
//
ID   Gypsy-21_DBp-I repbase;    DNA;    INV; 5920 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5920
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 689-689 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..298,298..699,656..1471,1381..3168,
FT                 3146..4246)
FT                 /product="Gypsy-21_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="IESKSNGDWDRHRIFIIEPNTILYHVSLVSFSFAKTR
FT                 VRLLLFGPYRNSPPLFLVYFCIALSLKYISTALKLTNQCHVRTEGKPLKFI
FT                 IDHIIYVLNLDLRLLSSISVIIASVKMSVRRSTENIAATPLESQVLCTICN
FT                 DTNPSDSIMETPCKHKFHKACLLEWLEKNDTCPNCRQSFPRALMIDRQCTT
FT                 SERRMPSYLQTDQDSNPNHSGAIPRSRMNTRSQLSISQLTAFKILDHSSRY
FT                 HSSQLSNNQRTRAGSSNPKRETVQDRISREQNSMQEESIQQIISSSMESYR
FT                 ASITASIEDQITTAIRNLNIFSRDPREEPQLEWXNELAPPLPRVSNXSNAR
FT                 NNSQRVRPPNSXSSDISLEQPDRISXVISNWRIKFSGTTNDLPIEDFIYRX
FT                 NCLTSQCLNGNFPLLSQFAHLLFAGPALSFYWRXHRTSEHIYWFIRSPEKI
FT                 KCWNCEELGHRYHDCLKPRRIFCYGCGLLDTYKPSCQKCNANSENSARDVR
FT                 RNPRGDIRQYVQAELPEMQREFGKLRQGCPPQSERGYPPIASDPIDTHSSV
FT                 NSPQISSTVSRPIKPYHIRLKEYQQRRKEIFSNPYSSAGRARSSQRIRDFW
FT                 NQKKSLRSFTISAVLGKEGRFLALLDSGANKSVIGGSLAQQVLSRNPFPSN
FT                 SKGVVRTADGQSQSVAGLIKLPLTYNSTSADFTFLVVPSIKQDVICGIDFW
FT                 KRFGISILHSSNLNEISVQDSLQPPLSLKQQAQLKTVIHSFPSFEKEGLGY
FT                 TSLIEHNIEVADAKPIKQRFYPISPAREKLLXDEIDRMLEMDVIEEAPSSP
FT                 WSSPVMLHVKPGKVRLCLDARKLNSVTVRDAYSYAYPIPIMEGLLSRLPPV
FT                 HCISKIDLKDAFWQICLDKDSRAKTAFTIPNRPLYQFKRMPFGLTNAPQTM
FT                 CRLMDLVIPYNLKQNVLVYLDDLLILSDSFESHLLHLSEVATQLRKAGLTI
FT                 NINKSQFCLKQVDYLGYIVGEGSLRVNPDKISAVKGFPIPQNQRQLRRFLG
FT                 MTGWYQRFIPNYSTIIFPLTELLRGKLLQWNPXAQAAFEEIKKQLCSAPFL
FT                 SHPDYXKPFIVQCXASSYGVGAVLAQKDDLGCERPMSIYVKETKAYMSRKL
FT                 NKAQRNYTVTELECLAVVLAIQKFRMYIEGHVFEVVTDHASLKWLMNQSDL
FT                 NGRLARWAIKLQGYGFTIVHRKGSENVVADALSRTYESSAADTISALEYET
FT                 LPQIDLDSEAFKSSEYTSLIEKFKNADLPDYQVIDGYIYHRTEFSENGHAD
FT                 DRWKLLVPNSLRVGVIYAAHDQPASAHCGIAKCLDQIRRRFXWPNMVADVR
FT                 NYIKNCQVCQTTKVPNRPLKPXMGAKVTSERPXQRLYLDFIGPFPRTKKGN
FT                 IGILIILDHFSKFTFLKAVKKFTSRVVIDILKEDIFTCFGVPETIVSDNGT
FT                 QFKSRELADFLSKYGVQQIFTGVYAPQSNAAERVNRSINAALRAYIKADQR
FT                 EWV"
XX
SQ   Sequence 5920 BP; 1815 A; 1257 C; 1178 G; 1607 T; 63 other;
     aatcgaatcc aaatcaaatg gtgactggga caggcatagg atttttatta ttgagcctaa        60
     tacgatttta taccatgtca gtctagtttc tttttcattt gcgaaaacaa gagtgagatt       120
     gttgttattt ggtccatatc gaaatagtcc tcctctattt cttgtatatt tttgtattgc       180
     acttagtcta aaatatatct ctactgccct aaaacttact aatcaatgcc atgtgagaac       240
     cgaaggtaag cctctaaaat ttattatcga tcatattatt tacgtcttga atcttgatta       300
     agattattat cgtcaatttc cgttattata gcttctgtga agatgtctgt taggagaagt       360
     accgaaaaca tagcagccac tccgttggag agccaggttc tgtgtaccat ttgtaatgac       420
     acgaacccta gtgatagtat tatggaaacc ccatgcaagc ataagtttca caaagcatgt       480
     ctgttagaat ggcttgaaaa aaacgatacc tgtccaaatt gcaggcaaag ctttccgcga       540
     gctttgatga tagatagaca atgtactact tctgagcgta gaatgccaag ttacttacag       600
     actgaccagg attctaaccc aaatcattcc ggagccattc caagatctcg tatgaatact       660
     agatcacagc tctcgatatc acagctcaca gctttcaaat aatcagcgaa caagagcagg       720
     tagctcgaac cccaaacgcg agaccgtaca ggataggatt tctagggaac aaaactctat       780
     gcaagaggaa agtattcagc aaattatatc cagctcaatg gaaagctata gagcaagtat       840
     tacagcctcc attgaagacc aaataactac agcgattagg aatttgaata tattctctcg       900
     agacccgcga gaggaacccc aacttgaatg gkataacgaa ttagcacctc cattaccacg       960
     agtcagtaat kctagcaatg cgcgcaacaa cagccaaaga gttcgaccac caaatagcmg      1020
     ktcaagtgat atttcactag agcaaccaga taggatttct aamgtcattt ccaattggcg      1080
     tatcaagttc agtggtacga ccaacgacct tccaatcgaa gattttattt accgaktcaa      1140
     ctgtttaact tctcagtgcc ttaatggtaa ttttcckctg ctaagtcagt ttgctcatct      1200
     tctatttgct ggaccagcac tctcattcta ttggcgtawc catagaacgt ccgaacacat      1260
     ttattggttt attagatcac ctgagaaaat aaaatgctgg aattgcgagg aattaggtca      1320
     tcggtatcat gattgcctta agccacggcg aattttctgc tatggttgcg gtttgcttga      1380
     tacgtacaag ccgagctgcc agaaatgcaa cgcgaattcg gaaaactccg ccagggatgt      1440
     ccgccgcaat ccgagagggg atatccgcca atagcctcgg acccaataga tactcattcc      1500
     agtgtcaata gtccacaaat cagttctaca gtttcaagac caattaagcc ttaccatatc      1560
     cgcctcaaag aataccaaca acgtagaaaa gaaatattta gtaatccata ttcttctgca      1620
     ggaagagcaa gatcatctca acgtatacgc gatttttgga accaaaagaa gagtttgcga      1680
     agctttacca tttcagccgt tctcggaaag gagggccgct ttttagccct gctagacagc      1740
     ggagctaaca aaagcgttat aggaggaagc ttagcacaac aagttctatc gcgaaaccct      1800
     tttcctagta attcaaaagg tgtagttcga accgcagatg gacaatcaca gtccgtagca      1860
     ggtctcatta aacttccttt aacgtacaac tccacatcag ccgatttcac atttttagta      1920
     gtwccttcaa ttaagcaaga cgtgatctgc ggaatagatt tttggaaacg ttttggaata      1980
     tccattttac attccagtaa tctaaatgaa atttccgtac aagattcctt gcaaccgcct      2040
     ctaagtctca agcagcaggc acaactaaag acagttatcc attcttttcc gtcgtttgaa      2100
     aaagaaggac taggatatac ctccttgatc gaacacaaca ttgaagtcgc tgacgcaaaa      2160
     ccaatcaaac aacgattcta cccaatttct cccgctagag agaaattgct gtgwgacgaa      2220
     atagatcgca tgcttgaaat ggacgtaatt gaagaagcgc caagttcacc atggtcttca      2280
     ccagttatgc ttcacgtcaa gccaggcaaa gtacgtttgt gcttggacgc tcgaaaactt      2340
     aactcagtaa ccgtgaggga tgcctattct tatgcctatc ctattcctat tatggaagga      2400
     ctcctcagcc gtctcccacc ggttcactgc atctctaaga ttgaccttaa agacgccttt      2460
     tggcaaatat gcctcgacaa agattctcga gcaaaaacag cttttaccat accgaacaga      2520
     ccattgtacc aatttaagcg gatgccattc ggattgacga acgcacctca aacaatgtgt      2580
     aggttaatgg atctggtaat tccgtacaat cttaagcaga acgtattagt ttatttagat      2640
     gatctgttga tcctatcaga tagttttgaa tcccacttgc tgcacttatc cgaagtagcc      2700
     acccaattac gtaaggcagg actcactatc aacataaaca aaagccagtt ttgtcttaaa      2760
     caggtagact acctgggtta tatagttggg gaaggtagct tacgagtmaa cccagacaaa      2820
     atatccgctg ttaaaggatt cccgattcca cagaatcagc gacaactcag gcgattcctt      2880
     ggaatgactg gttggtacca acgtttcatt ccaaactatt ccacaatcat atttcccttg      2940
     accgaacttc taagaggaaa actattgcaa tggaatcccw tggcccaagc agcttttgaa      3000
     gaaatcaaaa agcagctgtg ctctgctcca tttttgagtc atccagacta tgawaagcca      3060
     ttcatagtgc agtgtgamgc atcttcatat ggtgtaggag ctgtcctagc ccaaaaagat      3120
     gacttaggat gcgaacgtcc catgagcata tatgtcaagg aaactaaata aagctcagcg      3180
     caattacacc gtgacagaac tagaatgcct agcagtagtt ttagcaattc agaaattccg      3240
     aatgtatatc gaaggacatg tgtttgaggt agtcacagat catgcaagcc taaagtggct      3300
     catgaaccaa tccgacttga atgggcgatt ggccagatgg gctattaaac tccaagggta      3360
     cggtttcaca attgttcatc gcaaaggaag cgagaatgtt gtggcagacg ctctttcccg      3420
     aacttatgaa agttcagctg cagatacaat ctccgctctg gagtatgaaa ctcttccaca      3480
     aatcgacctg gactcagaag cattcaagtc atccgaatat acttcattga tagagaaatt      3540
     caagaacgcc gatttgccag attatcaggt tattgatggt tatatttatc atcgaacgga      3600
     gttttckgaa aacggccatg ctgatgatcg atggaaactt ttagttccca attcactgcg      3660
     agtcggagta atatatgcag cgcacgatca gccagcttca gctcattgcg gcatcgccaa      3720
     atgcttagac caaatccggc gaagattctw ttggcccaat atggtagcag acgttaggaa      3780
     ttatatcaaa aattgccagg tgtgtcaaac tactaaagtg ccgaatcgac ctttaaaacc      3840
     amcaatggga gctaaagtga catckgaacg accgwtccaa cgtctatact tagattttat      3900
     aggaccattt ccacgaacaa agaaaggtaa cataggaata ctgattatcc tcgaccactt      3960
     ctcaaaattt acatttttga aagcagtcaa gaagttcaca tcaagggtag tcatagacat      4020
     cctaaaagag gacatattta catgttttgg agtacccgaa accatcgtca gcgataacgg      4080
     tactcaattt aagagtcgcg aactagctga cttcctttct aaatatggtg tgcaacaaat      4140
     ctttacaggt gtatacgccc cacaatctaa cgcagcagag cgcgtaaaca ggtcaataaa      4200
     cgcagccctt agagcatata tcaaggcaga ccaacgcgaa tgggtatgag agcccgaatc      4260
     aaaaagaagt taggccaatc ttkttacttg ttggaggaca tgaatggcaa ggaaataggt      4320
     aaatatcatg ccaaggatat ttggtaatgg tgcactctcc tagtgttatc cagttttaat      4380
     gcaagggtgt tttccctcsa ttcaaactgt aggggagggg tgtgtagtgt gcacctcatt      4440
     ccaaaacgaa aacaaatatw taggtaggcc aatwtttcgc tcctcgactg tatccaccca      4500
     acakatggga acagaawtgc atatgcatgt gcmattcccm cccacacttg catgaacgga      4560
     ccaaagtagg tagaaaatca tacgattact ccgttaggca gggaagtttt atggaagcat      4620
     gctsaaactc ttggcagctc ttagcattka ttcttcctga tctttggccg agtaagaagt      4680
     ttccatcagc gtattccaaa agcgatagga aattcggcaa acacgtgtgt gcagmgaagg      4740
     cattcggmst aaaatamaat waaamaacaa tagttattga tcgtgttggg gammaaattt      4800
     acwaggtggc acagtgtgct acgattccga ccaggtgcag cctgataggc ttcgcgtttg      4860
     gawcttggcc ttggatcggg cgtaggacag ggccggasca gcaggamccc cagtaacccc      4920
     cccaacatgg aataatggga cacccttagc ttcgtgatct tcgcatggac cgccgataga      4980
     gtgacgtaac cagcgamsga gaagccccaa gtagcgtgca ttagggagga tcaggatgtg      5040
     aggagaaata agaamattca caacaacgaa taactgttgc cgctgcagtt cggttttgtt      5100
     tatttttgtg cttcagcgtg cagccagcca cttgttaggg tgaaagttcc gtattttgac      5160
     gattttcttt tgtgagcccg aatagammac atgccagtac tgcacagtgc gaaaaacatt      5220
     aaccttgcct gcgagcatkt gtatgtgaac actttckgca atatttaatt gcacaaaata      5280
     ttccaaggcg aacctcgata gctgcgccaa attagtatcg amtcccaccc caattgaaat      5340
     catgtataat tttctttaat ttaattctwt aaatccttaa ttttctatat attccctmaa      5400
     tgtaaactct aaggagtatg maktgtttak cctaggaccw tattttaagt agtttcataa      5460
     gcasaccgaw tcmgaamtat tggtcwggta tttcccaatg tattccttct cctttaatta      5520
     ggtaaacagc aaaaagcacc tcatcctctt gggcccaacg atcgatgsag agtcggaaaa      5580
     gctgagtgag taaacgagta attaccgaat tcgaatacaa tgggaaatcc atgacatttt      5640
     ctttactttt ccatttgaat attagtttaa attgtatttt ccttataaat tgtatttttc      5700
     tgataaattg tatttttcta tggattatat ttcctcaktt ttgattatcc ctaattatat      5760
     atgatgaaca tgagataaat tcttttattt agagcacttc ggatcaaaca tggcagttga      5820
     atatgggtag accccactgt twagtgtaaa gtctacatgg aagggagggt atagacgaag      5880
     gacaacaaca tctagtcttt cattcaatag ggtcagtagt                            5920
//
ID   Gypsy-21_DEl-I repbase;    DNA;    INV; 5711 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DEl-I.
XX
NM   Gypsy-21_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5711
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 458-458 (2012).
XX
RN   [2]
RP   1-5711
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           885..2381
FT                 /product="Gypsy-21_DEl-I_1p"
FT                 /note="RING-finger and gag."
FT                 /translation="MMGIDRSPERVAERGANIVCPICKAEVYLVEVCLTSC
FT                 QHEFHKRCIEAHWKKSALCPVCKASCRPTLPKSGDSRQTRSQSKNRQPVDN
FT                 ADKQVSDDIASSSGYNSNTINSGDTIPSAITTNAITLLAMERRLLATLTES
FT                 MASSIQKSVSEAMSRIMSDQGANRTPSELSQPFNSQQFGSGFNRIDTREDT
FT                 GVNSRQEILAPCSPASLRSADADLLNRPDKVVHILNGWKIKFSGVGVSVDN
FT                 FIYRVEALTKETLGNNFTVLCRNASVLFEGKANEFYWRYHKAYGEVRWDSF
FT                 CSALRLQFRPSRDDGDLEELIRNTKQKPNETFDSFYDNISSLIDQLEQPWM
FT                 PHKLIRVLRNNLRPEIRHEILNIDIQSVSELREICRRREAFLSDVRRCQGY
FT                 FKSSPFKREVSEFSPEPEMPPESESDKEGDIEAFSLLCWNCRKEGHRYQDC
FT                 VAERRVFCYGCGAVNTYKTSCNKCSKNSRAGGSMPPYKQKASSGVRSQATM
FT                 TDQ"
FT   CDS           2474..5650
FT                 /product="Gypsy-21_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="EKLISRNVNNEQELEKRKTRSSVRMKSFWQEVKTCKA
FT                 GLEYINSLPAGPKDPRPFLSIRMFDRTVYGLLDSGASISCVGGNLASDIIN
FT                 SKEFKSIKGSATTADGTSQQIVGHLKVVVEYNDVKRPLKIYVVPSLKQNLY
FT                 LGIDFWKLYDLLPKCINISSLESDPDRKVNADQHNLSEVDKAKLTNVINCF
FT                 PSFTQEGLGKTNLITHSIDVGTAKPIKQRHFPVSPAVEKAMYAEIDRMLQL
FT                 GVIEESESSWSSPIVMVTKPGKVRICLDCRKVNSFTEKDAYPLPQIAGILS
FT                 RLPKAEFISSLDLKDAYWQVPLEVSSRDKTAFTVPGRPLYQFKVMPFGLCN
FT                 ATSTMSRLMDKVVPAHLRNEVFIYLDDLLVVSSSFERHLEVLREIALQIKR
FT                 AGLTINIGKSHFCMLRVRYLGHIIGDGGIRTDPEKVTAITNFPLPKTLRSL
FT                 RSFMGLCGWYRKFVPNFASLSSPLTDLMTTKRRFSLTDEAIKAFEVLKLSL
FT                 SKAPVLCSPDFTKPFAIHCDASKTGIGAVLVQLSEEGDERPVAFFSKKLNK
FT                 AQRNYTVTEQEYLAAVAALKNFRAYVEGHKFKIITDHASLKWLMSNHDLNS
FT                 RLARWALALQRFMYFTIEHRKGSLNIVPDSLSRVNEDVVAAIDLREGFLVD
FT                 MNSEHFQSAEYVSLVEKVKANQENFPDLKSDSGYVYRKAEHLTGEQVHDEY
FT                 AWKLWIPKELVPEILSRAHDSPLSSHGGIHKTIERVRRYYFWPGLVPDVKA
FT                 YINACEVCKTTKAPNCVLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNI
FT                 GIFIVLDHFSKYVFLKPVRKIDTSAVIKYLEGELFMAYGTPETVVSDNGSQ
FT                 FRSYAFQKLVQQYGITHTLTAVHSPQANASERVNRSVISAIRAYLRPDQKD
FT                 WDEYLNRICCALRSSVHASLGTSPYYMVFGQHMITSGGTYSLLRKLNLLDD
FT                 RSLKFNRQDSFEIVRDKACKLMQEKHDINEKRYNLRSRVVSFEEGQEIYRR
FT                 NFKQSCFQTGYNAKFGPSFVKARVRRKLGNSYYELEDLQGRIIGTYHAKDI
FT                 RQ"
XX
SQ   Sequence 5711 BP; 1712 A; 1132 C; 1206 G; 1656 T; 5 other;
     gttataattt attattatta ataagaaaag tggcgcccaa acgtgtaggc cttaatgaat        60
     acagtttaat tcattgagac tcacagatgc ataaatttaa aaaatcttta acatttttct       120
     ttactctttt taaaattttt tcctaaattt ttaattattc ctggaaaaca gttcgagtga       180
     ctattagtat ttctgactgt ccgaaaatta taaattaacg agagaatttt tttttcttat       240
     aaatagcaga aaggacaagg tgtcttgatc tgaggaaaac agaggcataa gccagaacta       300
     ggtagatttt ctgtcccgga atcaaatgcc gagtcattga gcttatcacc tttatgaaat       360
     taaattagta catatacttc tctatacgga aaatactggc attactcacg agctgtgcca       420
     tatccagaaa gatgttatga acaaattttt tttcccttct tgggactaga ggatttatat       480
     tcttttaatc tggagttgga atacaagcga gtatgttcta gaacaatccg ctgaccaagt       540
     ccatataaag tataaaactt ctttcctttc ttcgtctttt attttctaat ttctgagaaa       600
     ttttataaaa atatagatac tcttcgacgt agagcatcaa gcaaagagtt cagttaatat       660
     ttccttatta cgttatttcg atttttttcc gtttgtttca aagatttaaa attttgctta       720
     cctattatcg tatctcttat atcttataac tcaaactact atcgtaccgc tgatatttta       780
     tcactgaaac tactctcgta ccgctgatat ttttgaggaa aatattatct taccgtttat       840
     atacagttga tttgctaaaa ctattttttt tatcgtccgt gtacatgatg gggatagacc       900
     gatctccgga aagggttgcc gaaagaggcg caaacatcgt ctgtccgata tgcaaggccg       960
     aagtatacct agtagaggtt tgccttacat catgtcaaca tgaatttcac aagcgatgca      1020
     tagaagcgca ttggaagaaa agtgcactgt gtccggtgtg caaagcttcc tgtaggccaa      1080
     ctctcccaaa gagtggggat agccgacaaa ctcgtagcca atcgaagaac cgtcagcccg      1140
     ttgataacgc ggacaaacaa gtatcagatg atatagcttc ttcatcagga tacaattcca      1200
     ataccattaa cagcggtgat actattccaa gtgctattac tacaaatgcc atcactttac      1260
     tagccatgga gcgamgatta ctagctacac ttaccgaaag tatggccagt tcaattcaaa      1320
     agtccgtttc tgaagctatg tcaaggataa tgtccgatca aggtgctaat agaaccccaa      1380
     gcgagctgag tcaaccgttc aattctcaac agttcggaag tggtttcaat aggatcgata      1440
     caagagaaga taccggggtg aattctaggc aagagatttt agctccgtgt tctcctgcgt      1500
     cgctacgaag tgccgatgca gacttattaa atcgaccaga taaagtagtt catattttga      1560
     acggctggaa aataaaattt tccggtgtag gagtgtcagt ggacaatttt atttaccgcg      1620
     ttgaagcatt aactaaggag acgttaggca ataatttcac tgtactttgt aggaatgcta      1680
     gcgttctttt cgaagggaaa gctaatgaat tctattggcg atatcacaaa gcttatggtg      1740
     aagtccgatg ggatagcttt tgttcagcct tgcgtctaca gtttcgaccg agtagggatg      1800
     atggtgatct tgaggagttg attagaaaca ccaaacagaa gccaaacgaa acttttgata      1860
     gtttctatga caacatttca agtctaatcg atcaattaga acagccttgg atgcctcaca      1920
     agctcattcg ggttctccga aacaatcttc gtcccgaaat tagacatgaa atcttgaata      1980
     tcgacattca atcagtttca gaactgaggg agatttgtcg caggcgtgaa gcgtttttgt      2040
     ctgatgttag acgttgtcag ggttatttca aatcttcccc tttcaaacgt gaagtttcgg      2100
     aatttagtcc agaaccggag atgcctccag aatcggaatc cgataaagaa ggcgatatcg      2160
     aagccttttc cttgttgtgc tggaattgcc gcaaggaagg tcacaggtat caggactgtg      2220
     tagccgaaag aagagttttt tgttacggat gcggagcagt caacacatac aaaacaagtt      2280
     gtaacaagtg ttcaaaaaac tccagagcgg gcgggtcgat gccgccatac aaacagaagg      2340
     cctccagtgg cgttcggagc caagcaacga tgaccgatca atagagcatg cagctacagt      2400
     tgcaccaaca tttttmcctg acgtacaaat atccccagac tgtcctttgc tcatagcaaa      2460
     attccaatat taggaaaaat taatatcccg gaatgtaaat aatgaacaag aattagaaaa      2520
     gcgaaaaacg cgaagttccg tccgaatgaa atcattttgg caagaggtca aaacgtgtaa      2580
     agccggactg gaatatatta actctctacc kgcmggacca aaagatcctc gacccttttt      2640
     atcaattcgc atgttcgatc gtaccgttta cggactgtta gactctggcg cgtcgataag      2700
     ttgtgtcggt ggaaacctag ccagtgacat aattaacagt aaagaattta agtcgataaa      2760
     aggcagcgct acaactgctg atggaacatc tcagcagata gttggtcatt taaaagttgt      2820
     tgtagaatac aacgacgtta aaagaccctt aaaaatctac gtggtacctt cgctgaagca      2880
     aaatttgtat ttaggcatag atttctggaa actttacgat ttgcttccga aatgcattaa      2940
     tatatcatca ctagaatccg atcccgaccg taaggttaat gctgatcagc ataacttgtc      3000
     cgaggttgac aaagccaaat taacgaacgt cattaattgt tttccgtctt tcactcaaga      3060
     aggtctcggc aagaccaact tgataacgca ctcaatcgat gtcggtacgg ctaaaccgat      3120
     aaaacaacga cactttcctg tctcacccgc agtagaaaag gccatgtatg ccgagattga      3180
     cagaatgtta caattgggtg tgatagagga gtccgaaagt tcgtggtctt ctcctattgt      3240
     aatggtgacg aaacccggaa aagttaggat ttgtctagat tgccgaaagg taaacagttt      3300
     cacggaaaag gatgcmtacc ctcttcccca gatagcggga attttaagtc gtttgcctaa      3360
     ggcggaattc atatccagcc ttgaccttaa ggatgcctat tggcaggttc ctttagaggt      3420
     ttcatcacga gacaaaacgg ctttcactgt ccctggtaga ccgctttacc agtttaaggt      3480
     tatgcctttt gggctgtgca atgccactag tacaatgtcc cgtttaatgg acaaggttgt      3540
     gccagctcat ctcagaaacg aggtgttcat ttaccttgac gatttattgg tagtttcttc      3600
     cagctttgag agacatcttg aagttctcag agagatcgcg ctgcagataa agcgtgcagg      3660
     tttgacgatc aatattggca aaagtcactt ctgtatgctt cgtgtgcgat atctaggtca      3720
     tataatcggc gatggtggaa tacgcaccga cccagaaaag gtgaccgcaa ttactaattt      3780
     tccgttaccg aagacgttac gcagtctacg aagttttatg ggtttgtgtg ggtggtatcg      3840
     taagtttgtt cctaatttcg cttcactctc atctccttta acagacttga tgactacaaa      3900
     acgaaggttt agtttaaccg acgaagccat taaagctttc gaagtcttaa aactttcgct      3960
     cagcaaggct ccagtcttat gcagccccga ctttacaaag cctttcgcga tacattgcga      4020
     cgctagtaaa acagggatag gcgcagtact agtacagctg tcggaagaag gagacgaacg      4080
     gcctgttgct ttcttttcaa agaagctgaa caaagctcag cgtaattata ctgtcaccga      4140
     gcaagaatat ctagcggcgg tagcagctct taagaatttt agggcgtatg tggagggaca      4200
     taaatttaaa atcataacag atcatgcctc attgaagtgg ctaatgtcaa atcacgacct      4260
     aaattcacga cttgctcgat gggctttagc tttacaaaga ttcatgtatt tcacaattga      4320
     acatcgaaag ggttctctaa atattgttcc cgactcactt tcccgtgtta acgaagacgt      4380
     ggtagccgct atagacttac gcgaaggatt tttagtggac atgaactcag agcatttcca      4440
     atcagctgag tatgtttctc ttgtagaaaa ggtaaaagcc aatcaagaaa attttcctga      4500
     tcttaagtct gacagtggtt atgtttatcg gaaagccgaa catttaacgg gagagcaagt      4560
     tcatgatgag tatgcttgga agctctggat acctaaagaa ctggttccag aaatcctctc      4620
     gcgagctcac gatagtcctt tatcttctca cggtggcata cacaagacga ttgagagagt      4680
     aaggcgatac tatttttggc ctggccttgt tccagatgta aaggcttata taaatgcctg      4740
     cgaagtgtgc aaaaccacta aagctccgaa ttgtgtattg cgaccgccat taggaaaagc      4800
     gccggaaagt cagcgatttt tccaacggtt gttcatagat ttccttggac cttatcccag      4860
     atccagaagt ggaaatatcg gtatatttat cgtgctcgac catttttcaa aatatgtctt      4920
     tctcaaaccc gtaaggaaaa tagatacaag tgcagttata aaatatctag aaggggagtt      4980
     gtttatggca tatgggactc ctgaaacagt ggtgtccgac aacggctcac aatttcgctc      5040
     ttacgctttt cagaaattag tgcagcaata cggcattacg catacgctga cggctgtcca      5100
     ttcgcctcag gctaatgcgt ccgagcgcgt taaccgctct gtaatttctg caattagggc      5160
     ttatcttcga cctgaccaaa aggactggga cgagtatctc aacagaatat gttgcgcgtt      5220
     gagatcgtcc gttcatgcta gtttgggaac ctctccctac tacatggtct tcggacaaca      5280
     tatgattaca tccggtggta catattcttt gttaagaaag ttaaatttac tagatgatcg      5340
     ttctttgaaa ttcaatcgtc aggattcatt tgaaatagtt cgagataaag cttgcaagtt      5400
     aatgcaggaa aagcacgata taaacgagaa gcgatataat cttcgctcta gagttgtgtc      5460
     ttttgaagaa gggcaagaga tttaccgtcg aaattttaaa caaagctgtt ttcaaactgg      5520
     ctacaacgca aaattcggtc cttcctttgt gaaagcgagg gttcgaagaa agttaggaaa      5580
     ctcttattac gaattagaag atttacaggg tcgaattata ggtacctatc atgcaaaaga      5640
     tattcgacaa taacgtgtct tcagtcggta tctgtctagt gtaaccctag ccagattttc      5700
     cgggggggct t                                                           5711
//
ID   Gypsy-21_DEl-LTR repbase;    DNA;    INV; 2468 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DEl-LTR.
XX
NM   Gypsy-21_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2468
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 459-459 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Similar to Gypsy12A_LTR from
CC   Drosophila melanogaster.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2468 BP; 814 A; 460 C; 431 G; 763 T; 0 other;
     tgtagcggcg cctgaagaac gtttgtttgt tttggcttga aaactggcga ttattttttt        60
     tgtatttagc gacctttgga gagtagccag atgtctagcc aaatttagtg tcggaaatta       120
     gtgtttagca aaaaaaatac taattagtat ttttgcgggt gatgccagat agttccacga       180
     tcagctgttg ctgagaagct tgtcctaagc cgaaatggcg gatttttcag ctgtcagaaa       240
     tttctagaaa aggccgcaac cgacgccgct tgatttttga acttccttct taattaaacc       300
     ggcgtggcag tcagacgtgt gcaattttat ccgttcccaa tcggcaaagt gggaaaaaat       360
     atatacacgc ggtatttcga agttcttgca aagtgatttt ttttaacgcg aataattcga       420
     gcaaaagaag tgagttgtgt gggttttctc gctaaatatt ttcaagtgct gaattttcga       480
     tttcttttaa aaggctgaaa ttttgcgttt cggggagcac ccgcctcggc cggcaattag       540
     atctgccctg tggagcaccc acgctgccca gcgttttgga tcagcccgga ggagcaccca       600
     ccttggccgc atccagatct gtcccgcgga gcacccacgc tgccccgcga ttcggatccg       660
     cccggaggag caccccattg ccggcgatct gcagtcgccc tgaggagcac ccgccttcgc       720
     caagccgcag tgccttaggg agcacccccc ccaaattttg ttcagtgatc agcaggagca       780
     gggagcaccc ccaaattttg ttcagtgatc agcagttgaa gcagcactct ctcatttaac       840
     ttaacgagga atttcctcgg ccaaataagc atataggcta gaaaaaaaaa agaaaaaaga       900
     aaaaatgtcc aattagatcg gccctaaccc aaattcaaat ttagaaaaaa aaaatgtaaa       960
     aactacgctt gggctcgatc ttaacctcat ttgtaaccta aaaaaaaaat ccagcttgcg      1020
     aaaaatgttc acgtgcatat cagccaacca ggctacactg gaagaaattc ctaaacttgt      1080
     gttaacgtaa atcaaaaaaa aaaaaatgta ttaaaagaat gcgattgaat attgaagtga      1140
     ctataattat gttatgaaaa aaatttaatt taattaaata attataagat ttaaattaag      1200
     ttatgattca tctagtgcgc ggttaattta cggttcctat ctcctggcaa aagttttctt      1260
     aaattcgttt tgattcgaaa aaaaaattaa ttagaaaatg gttttgagtg cacatataat      1320
     ataatatata ttatattata ttattttatt atataaaata ataaccatgt caaagcagaa      1380
     atgccttgat ttcttttcca gcctacctgc gtcggaagat cgatcgtccg ccgaggaacc      1440
     agctgtgtga gttgttttac ctttatttca aattattaaa aaattaaaat attagtgcca      1500
     attaaattct cataaacaaa aaaaaaatat atatatatat atcaatgccg aaaatttaag      1560
     aaagccatta cttctaaaat taactatgaa aaaaaaaatt tacaaaaaaa tgaatttaca      1620
     ctgagaattt tttttctttg aaaaaaaaaa aattaatttt aaataaaatt aaaagtaatt      1680
     aactagcgaa ccactgatga atattgaatt aagaatgaat attagtaatc ataaagaaag      1740
     aacaaatctt tgaatttcct ttgaacatat aactatttat ttatttttaa agatcatttt      1800
     gtttaatata ccctatactt atttttaact atttttacta tacatatgta ctttacatta      1860
     ataattatat acacctgtga agcccagtat ttacccatga ggtttaacgc gtattatatt      1920
     tttatctttt ctcgccgaaa ttgttttctc gtttgtaaat tatctaagaa agattaaaaa      1980
     tgttcttatt gaaatcaatt gaaataatca ttaaaatgaa agcttaaaga aaactaaata      2040
     actgaactca gctgatgtct ctgcggtcgt agggtgtaaa agggatcacc agagttatgc      2100
     tctagcggca ggtggtcata ggtagggtgg gcaatatgcg agccaaatta catctacggc      2160
     gtcgcaaaca acaaatttct ctctctcttt cttttacact gtcccctttc aataatttct      2220
     caaaactttt cttttctaat ttatgcatct tttcttccgg ttaagtatct agcttttgat      2280
     tttgtcgcat gcacgctcaa ttctgatttt attaatagta atacgtagac agtgtcaaga      2340
     tctgtacgag caagacctcc accccccaag ccgacgagct agagccggaa tatttagcgt      2400
     gcgcagccaa tacagatcct tgaaaacatt aaagtacttt gcactttagt cgaacgttac      2460
     acgctaca                                                               2468
//
ID   Gypsy-21_DMel-I repbase;    DNA;    INV; 6877 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6877
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (15-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   Conceptually extracted from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(866..1066,1070..1207,1182..1406,1397..1690,
FT                 1665..1946,1950..2213)
FT                 /product="Gypsy-21_DMel-I_1p"
FT                 /translation="IKFLLIYKKLLHSKKIHISRKKHILNYPILQKRTPQT
FT                 LTNIYTIKKKKMIIIHITLLKTIQNIAHKLRTSILSFIYFIIYKYSKNTIF
FT                 GRKECIRIRRGSSLCLDVKENCRKNMSKKIVEKTKQGLGSSNSAGPTTRAS
FT                 SQIVEQVAINMDSGNVSHSISPTVSGVSTISTTLSPNDILPFERDEMRVDE
FT                 SLTLAGTSLVWDDIKKGLKRLYGSKKSEAILLREIQSLPDNLSLGHLFSTI
FT                 TKIKGQLISSVQGGNHAATVMEAKKQLYNEVALNSLMVGRSNRTPWSVALI
FT                 EPLRTIIRLKNPTTIEQAYEFCQVEQTFYYQGKRDRTYVERGNQGNRTNPN
FT                 NNQNQKHYNNSGKNFEQRNNPFRSSNVPSASLNNIARETKQRQMFRQEPPQ
FT                 TNRVHKWSNTCGGFTFHTIINKTLKFLLDTGSTHSFVDPLLVQPKNIQALG
FT                 SPITIKTALDNHTITERTAWKMQ"
FT   CDS           join(4669..5034,5025..5549,5498..5758,5832..6212,
FT                 6275..6562,6566..6874)
FT                 /product="Gypsy-21_DMel-I_3p"
FT                 /translation="KFCGIPKKLVYDQGPEFAGKVFKKFCCQYNIQLHVIS
FT                 FQQSSSNSPVERLHSTLTEIYRIITDSRKEEQLPCEHEEVLSQTMITYNNA
FT                 INSSIKLTPYEVFHGKTHTFNNSVKFNGEHDYFSLFQLNIFRENIYPKVKR
FT                 KLEETVYKRTMKLYENRTDEIEIEEGDKIFRKKKKTEEIRLQLVSQSIKCQ
FT                 GYMDLHLKQAEVKRYTSLKSKRLQRKKNITNGLGLLSFFFFRFVLVSAQFI
FT                 SIQDINESTNPIAKIELGECLIFQTYKSIKHIIDLQEYECSKMKRSLTQLI
FT                 SLRVRMQQDETLIDAAYILESKIAQLREKIEILTPSGKQKRGLVNGLESIV
FT                 KSITGNMDAIDGQEIEEKIDLLKEKRKKLNKCVTGLRSIQQKYLKIKFFKE
FT                 LSKEQDHINKLQYINRIIYNIDRLVYHLNDLSESIIMAKTKIIPKLILDPK
FT                 KITKIKEIIRKHNITIESKQEIYKLIKLNTYSTQNKITFEIMISIFEKQNY
FT                 KIARIIPLPLNKYFLQQTANKSICDIESIKTLPTNELCMQNLLKNNHSNCD
FT                 TQNTGMVTDILEQEKGYIFIFIINAKETKVKTPEGNETCINGNAIIEVNGW
FT                 DYDNTKESIEHPPTREISRNNTVETLKRQRLHLEAIETHEKVIIASNTTTQ
FT                 HTSILYRIVEVLSIARIIVWKARPVTIFTPNTEHHVPMVALDIPYFGTYMT
FT                 IASIWGGWGV"
FT   CDS           join(2246..2566,2505..2741,2745..3074,3078..3329,
FT                 3333..3581,3514..3885,3831..4058)
FT                 /product="Gypsy-21_DMel-I_2p"
FT                 /translation="CRYKRDREEKDLIISDGIYRAENGISNLEVSNYTDTD
FT                 RLVYVEQAIESIPYKKEEAIELHTITSDKYTLQNTPEESQKFIFEHLNLEE
FT                 KKAISKLCREFSDIFYKKKKKRKRYQNYAENFRTYFIKKNEPLTFTSLVKH
FT                 NIPLTDKKPYRFAFALRQEIKKQVKELLKKDVNRSSHSRWSAPVWVVKKAD
FT                 ATGQRKRRLVTDFRKLNETTVSDKNPIPNINDILNQLGKTKYFSNLDLASG
FT                 YHQVEMSPEDIPKTAFTVEGGHFKYVRMPFGLKNAPAAFQRVMDSILKTWL
FT                 VKYVCIFDIIIFSPSLQEHISNLKTVFQREANFKVHLNKSGFLRKEVEFLG
FT                 HVVKQEGVKHNPNKIKIIKDFSCPHNRKTIKSFLGVLYYRKFIRDFARITK
FT                 PMTKQLKGKKPVQINEEFLEAFEVRKTLLTNDQILKYPEFDKPLILTTDAS
FT                 NFAIGAVLSQCTAVLFKQQPTLVILLSEQYYPSALQCSLNNDKPTCYANRT
FT                 LSDAEVNYSTIEKKMFAIIWAVKYFRPYLYGNKFTIVTDHKPLTWLMNFKE
FT                 PSSKILRWRIQLMEYDFDIIYKKGSQMRLVELIMRYTQTKKRLTDALSRID
FT                 HEVHTNEVVATDIATNTITNIQIPITEKPVNDLNLQIVLQGGQTTEQKIII
FT                 PFKNKLRKYYIYYI"
XX
SQ   Sequence 6877 BP; 2838 A; 1155 C; 1145 G; 1739 T; 0 other;
     acctgggcca ttgacagaac caagaggact cccggtctga tggtgactgg cgcagccgga        60
     aaacggaatg aacttacaca aaattatatt taagattatg cagtgagtag agtacagtgg       120
     aaaatacatt aaaagaaaca tgtatcaaat atatacagtt taaaacttta aaccagtgat       180
     cgggtatata taatataacg aaaacataca aacaaaagca catatcacaa aagtagagaa       240
     gcgtatcaca agtacacaca cacaaaacac ataagcaaaa ttaaactatc cacatataaa       300
     tgaccaaaag tatatgccga aaatataaac agtaacgtgg tggcgaagtc aaacgctgac       360
     gacgaaacta cattgtttgt atttagtggc aacaaaaaaa gggctgacaa agaagaattc       420
     agttgctata gtcgaatgga gtataacaaa gatcaatcgc tgatattgct atacttatac       480
     attcgcttca acaagacatc aaacgatgat gtcactgttg tcgtaaaata gctgcacaaa       540
     agaatgccac acaattttaa acacattagt gccgtagtga aagagtgaag tgtagtaatg       600
     atcaaacgct gatacttact tacaaactca cttcaacagg gtatcaaacg ctgagactac       660
     tgttgttgtc acatagcacg ccaagaataa atatataaat gtgtataaat gtgttatgta       720
     tttaaaagta gcaatatcta tcgctgatat tagactacaa agaatgctga tacgatcgca       780
     atagaagtat acctacatgc atgcatttta aattaatgtg gcacgatcac tgacttacac       840
     agctatacac attaattcaa aatgaataaa gtttctttta atttacaaaa aactgctgca       900
     cagtaaaaag atacatatat ctagaaaaaa acatatacta aattatccta tattacagaa       960
     aagaacacca caaacactca ctaacatata cactataaag aaaaaaaaaa tgattattat      1020
     acatataaca ttgttaaaaa caatacaaaa tattgcacac aaattgtaac gcacatctat      1080
     tttatctttt atctatttta tcatctataa atattctaag aacacaatat ttggaagaaa      1140
     agagtgtatt aggattcgac gtggaagtag cttgtgtcta gatgtcaaag aaaattgtag      1200
     aaaaaactaa acagggacta ggctcaagta actccgcagg cccaactact cgagcgagta      1260
     gtcagattgt tgaacaggta gcaattaata tggattctgg caacgtttct cattcgatct      1320
     caccaacggt gagtggagta agcactatat caacgacatt gagccctaat gatatattac      1380
     catttgagag agatgagatg agagtttgac cctagccggt acctcgctag tgtgggatga      1440
     tattaagaag ggactcaaaa gattgtatgg cagcaagaaa tcagaagcga ttctccttag      1500
     ggaaattcaa tcactcccag ataatctgtc actaggtcac ctattttcaa caattaccaa      1560
     aattaaaggg cagctcatat catcggtaca aggaggaaat cacgcggcca ctgtaatgga      1620
     agcgaagaaa caactttata acgaggttgc tctgaactca ttaatggtcg gtcgctctaa      1680
     tagaacccct tagaacgatt ataagactaa aaaaccctac aactatagaa caggcctacg      1740
     aattttgtca ggtagaacaa actttctatt accaaggaaa gagagataga acttatgtag      1800
     agcgaggcaa tcaaggtaat cgtacgaatc cgaacaataa tcaaaatcag aaacactata      1860
     ataatagtgg caaaaacttt gaacagagga ataacccctt taggagcagc aacgttccct      1920
     cagctagttt gaataatata gcgaggtagg aaaccaaaca acgacaaatg ttcaggcaag      1980
     agcctcccca aaccaaccgg gttcataaat ggtcaaacac atgtggcggg tttacctttc      2040
     atactattat aaacaaaaca ttaaaatttt tgttggatac aggttccact cattcttttg      2100
     ttgatccctt acttgttcag cctaaaaaca tacaggctct aggttcacca attactataa      2160
     aaacggcctt agacaatcat acaataacag aaagaacggc atggaagatg caataatacc      2220
     ataataccat aataccatac cataatgccg gtacaaacga gacagggagg aaaaagattt      2280
     aattatatca gacgggatat atagggccga aaacggcatc agtaatttgg aggtgtcgaa      2340
     ttacacagat actgatcgac tagtatatgt tgaacaagca atagaatcaa taccctataa      2400
     aaaagaagaa gctatcgaat tacatacaat tacttctgat aaatatacac tgcagaatac      2460
     tcccgaggaa tcacaaaagt ttatattcga acatttaaat ctagaagaaa agaaagcgat      2520
     atcaaaatta tgcagagaat tttcggacat attttataaa aaaaaatgaa ccattaacat      2580
     ttactagttt agtaaaacat aatattccgt taacagacaa aaaaccatat agatttgcat      2640
     ttgcattaag gcaggaaatt aagaaacaag taaaggaact actgaaaaaa gatgtaaata      2700
     gatcaagtca ctcccggtgg agtgctccag tatgggtagt ataaaagaaa gcagacgcta      2760
     caggacagag gaaacggaga ctagttacag actttaggaa acttaacgag acgacagttt      2820
     cagataaaaa cccaatacca aatattaatg atatattaaa ccagctagga aaaaccaagt      2880
     atttttctaa ccttgatttg gctagtggat atcatcaggt agaaatgagt cctgaagaca      2940
     taccaaaaac agctttcaca gtagaaggcg gtcattttaa gtatgttaga atgccgttcg      3000
     gtctgaaaaa cgcaccagcg gcttttcaaa gagtaatgga cagcatacta aagacctggt      3060
     tggtaaaata tgtttagtgt atctttgata tcattatatt ttcaccatcc ctgcaagagc      3120
     atatatcaaa tttaaaaaca gtgttccaaa gagaagcaaa ttttaaagta cacctgaata      3180
     agtcagggtt tttaaggaaa gaagtggagt ttttaggaca cgtagtcaaa caggagggag      3240
     taaaacataa cccgaataaa attaagatta taaaagattt ttcatgccca cataacagaa      3300
     agacgataaa atcattttta ggagtactat gatattacag aaagtttatt cgagacttcg      3360
     cccgaataac gaagccaatg actaaacaat tgaaagggaa aaaaccagta caaatcaatg      3420
     aagaatttct ggaagcattt gaagtacgta aaacattact gactaacgac caaattttga      3480
     aatatccgga attcgacaag cctcttattt taacaaccga cgctagtaat tttgctatcg      3540
     gagcagtatt atcccagtgc actgcagtgc tctttaaaca atgacaaacc tacttgctac      3600
     gcgaatagaa cactctcgga cgcagaagta aattattcaa caatagaaaa aaaaatgttt      3660
     gccatcatat gggcggttaa atattttcga ccgtatcttt atgggaacaa attcacaatt      3720
     gtcacagatc ataagccgtt aacgtggtta atgaatttta aggagccaag ttcaaaaata      3780
     ttaagatgga gaatacaatt aatggaatac gatttcgaca taatatataa aaaaggctca      3840
     cagatgcgct tagtagaatt gatcatgagg tacacacaaa cgaagtagta gcaacggaca      3900
     tcgcaacgaa tacaataact aacatacaga tacctataac agaaaaaccg gtaaatgact      3960
     taaatttaca aatagtactg cagggaggac agacaacgga acagaaaata ataatacctt      4020
     tcaaaaataa actaagaaaa tactatatat actatatata gtattatata tttatattat      4080
     aattatatta ttatattata tatttatata tttagtatac tatactaaat acttacaaaa      4140
     gagaatgtag aacgcatatt aaaagcaaca cttaaaacaa aaaagattta tgcaattttt      4200
     acaacagatg atacttttaa aatagtacaa gaagtttatg cacaaaattt cccacaagat      4260
     aaaactttca cacttgttag atcacttgag ctgcttccag aagaaaagga taaagctaag      4320
     caggaagaaa taagtaataa agaccaccag aatagaaatc ataggggtat agatgaatcg      4380
     tatttacatt taaaaagata aatatatttt cctaatatga aaagcacaat aggcaacgtt      4440
     attaagaact gcgaaatatg ccttaggcta aaatacgata gacagccgcc aaaaataccc      4500
     tatcaaactc cggaaactcc aagtgctcca cttgaaatag tacatgtgaa tatacatata      4560
     tacaatcagt gggaagtata acttaacgct aatagataca ttttcaaaat ttgcttgggc      4620
     ttatttagta actaatagaa attcgatatg cattataaaa gcttttaaaa attttgtgga      4680
     attcctaaaa aactggtata tgaccaaggt ccggaatttg cggggaaagt attcaaaaag      4740
     ttttgttgcc aatacaatat tcaattacat gtcatctcgt ttcaacagtc ttctagtaac      4800
     tcacctgtag agagattaca ttcaactctc acagaaatct atagaataat cactgatagc      4860
     agaaaagaag aacaactacc atgtgaacat gaagaagtac tatcacaaac catgataaca      4920
     tataataacg ctataaactc aagtatcaag ttgacaccct atgaagtttt ccatggtaaa      4980
     acccacactt ttaataactc tgtgaaattt aatggagagc atgattattt cagttaaata      5040
     tatttcgaga aaatatatac ccaaaagtaa aacgtaagtt agaagagaca gtatacaaga      5100
     gaactatgaa attatatgag aatagaacgg atgaaataga aatagaggaa ggagacaaaa      5160
     tctttagaaa aaaaaaaaaa acagaagaaa taagattgca actcgtttca caatccataa      5220
     agtgtcaagg gtacatggac ctacatttaa aacaagcaga ggtcaaaaga tacacaagtc      5280
     taaaatcaaa aagactgcaa agaaaaaaga acataactaa cggtctcggc cttctctctt      5340
     tctttttttt tagattcgtg ctagtttcgg cacaattcat atcgatccaa gatattaatg      5400
     agtccactaa tcccatcgcc aaaatagaat taggagaatg tttaatattc caaacttata      5460
     aaagtattaa acatataata gacctacagg aatatgaatg cagcaagatg aaacgctcat      5520
     tgacgcagct tatatccttg agagtaagat agcccaattg cgggaaaaga tagaaatact      5580
     aacaccctcg ggaaaacaaa aacggggctt agttaacgga ttagaaagta tcgtaaaatc      5640
     aataaccggt aatatggacg ccattgatgg ccaagagata gaagaaaaaa tagacttatt      5700
     aaaagaaaaa agaaagaaac ttaacaaatg cgttactgga ttaagaagca ttcaacaatg      5760
     agatacaaat aagactccaa gatatagcaa aagtattaac caagagaaag atatgataag      5820
     tcgattttta gaaatatctc aaaataaaat tttttaaaga actatcgaaa gaacaggacc      5880
     atattaataa attacaatac attaatagaa taatatataa tatagatcgg cttgtatatc      5940
     atttaaatga tctatcagag agtataataa tggctaaaac aaaaataata cctaagctaa      6000
     tactagatcc aaaaaagatc acaaaaatta aagagatcat aagaaaacac aatattacta      6060
     tcgaatcaaa acaagagata tacaaattaa ttaaactaaa tacatatagt acacaaaata      6120
     aaataacatt tgaaattatg atatctatat tcgaaaaaca aaattataaa attgctagaa      6180
     ttataccatt accactcaac aaatattttt tataatagcg cctaagttta tagcatacaa      6240
     cgactataaa attgtacacc tttcgaacaa atgacaacaa actgccaaca aatccatttg      6300
     cgacatagaa agcattaaaa cactaccaac aaacgaatta tgtatgcaga atctactaaa      6360
     gaataatcac agtaattgtg acacgcagaa tacaggcatg gtcacagata tattagaaca      6420
     agaaaaggga tacatcttca tcttcatcat caatgcgaag gaaactaaag taaaaacacc      6480
     agaaggcaat gagacctgca taaacggaaa tgctataata gaagtaaatg gatgggacta      6540
     tgataacact aaagaaagta tataagaaca tccacctaca agagaaattt caagaaacaa      6600
     cacggtggaa acactgaaac ggcaaagact acatttagaa gcaatagaga cacatgagaa      6660
     ggtaatcatc gcaagtaaca caacaacaca gcacacatcc atcctttata ggatagtgga      6720
     agtactatcc atagcaagaa tcattgtctg gaaagcaagg cctgtcacaa tttttacgcc      6780
     aaatacagaa catcatgtac ccatggtcgc gctggacata ccatactttg gtacatacat      6840
     gacaatcgct tcaatctggg gagggtgggg ggtgagg                               6877
//
ID   Gypsy-21_DMel-LTR repbase;    DNA;    INV; 436 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-436
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 721-721 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 436 BP; 158 A; 93 C; 75 G; 110 T; 0 other;
     agttaccgac ccatcggtaa cacgcctaca ctccccaccg aaaccccctc gatcgtttca        60
     cgttcactaa gaattttatt gaaccgggaa acattgtagc caataagcga atgtcgcaac       120
     tgcagacaca tccgcttaga agctacaaca acaagaatat gactatgtca aagcattgga       180
     cagttggccg gctgcaaaat tacaacgtaa acaaattgtg ctagctaaga tatatatata       240
     taagacaaag acacttttca gcattcaact cactttttat tcattgctaa cgaccggacg       300
     tgtattgtcc agacatatat tgtaaacttc aaataaaaat atcacaaacg gaataaagtg       360
     gtgtataatt gaagaaaaca attggaaatt tgactagagg agtgaaacat aactgggtat       420
     tgcaactatc tacgtc                                                       436
//
ID   Gypsy-21_DMo-I repbase;    DNA;    INV; 5657 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-5657
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2959-2959 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           827..2329
FT                 /product="Gypsy-21_DMo-I_1p"
FT                 /translation="MPISRSPQDMRTVEKTVSLCSLCSQGMSNTQQCYCTP
FT                 CKHNFHKLCLEQWLENKQECPECQSTLDPRSIKLVIGNCSPDPKPASTSAI
FT                 PGSSRMVTRNLAKALGEVPPESLEHPQERSLEGSEVIISGLDASHNSDRNV
FT                 VPPPRGISTRRRGRPNRAGHTRQESAGVDYNIIQQMIEQSVTRVMSALRID
FT                 SRPSSSEQLPSIPTPMAYSPGGSSVQSRRTADIMQKWNLHFDGSSEGLGVE
FT                 EFIYRVRVLTDETLDSDFMGLCKHLHILFSGKARDWFWRHHKQVDRIVWND
FT                 FCAALRQQYKDYRSEFMSKELVRARKQKVGESFVAFHDSVAALIDKFGLKI
FT                 GEEELLEILQNNLLPEMRHKLLYQSISSVGHLRRLVQMSENLTNDLISQSD
FT                 NFSRPKTVAFRRQINEIENTGLGIEVEEETDSAELEIAAMQKAHSNLTCWN
FT                 CEEKGHVWENCLRDRRVFCYGCGTPQVYKPQCKICIRRLAENQQKGTSPKN
FT                 RMPPN"
FT   CDS           2275..5598
FT                 /product="Gypsy-21_DMo-I_2p"
FT                 /translation="VSGKPAEGDIPQKSDAPELIDPISNNLASSLQSSNEI
FT                 DARVLDLRFLPYKDKLSKYLEIRRRIFNEPNSVMSKRSARLRKYYREIKSR
FT                 RKLVISNIFSNQKDMRSYAKVSFLNFQESGLLDTGANISCIGATLAENDFS
FT                 KSPCFKSLKSFVKTAGGENQAVIGVLSVVMQYKAISKPMKLYVIPNIKQNL
FT                 ILGHDFWKTFALAPDIISAVEADLDVVDEDVEGKYPLTSLQLQQLNAVKQL
FT                 FPNAAEKLGRTSLIKHHIDVGEAMPVKQRFYPVSPAVEQLLYKEIDRMISL
FT                 GVIEPSTSAWSSPMRLVVKPNKVRLCLDARKLNAVTKKDAYPLPSIDGIFS
FT                 RLPKANIISKLDLKDAYWQIELTDDSKPLTAFTVPGRPLYQFKVMPFGLCN
FT                 APSTMCRLIDEIIPPDLRNCVFGYLDDLCIVSEDFNSHISVLVRIAEQFRK
FT                 ANVTLNIEKSHFAVTKVNYLGYVIDKTGICTDPDKISCIQNWPPPKNLKQV
FT                 RGFLGVCGWYRRFIKNFSDLACPITEVLSSKKKFNWTPEAQTAMEKLKAVL
FT                 TTSPVLQNPKFDQKFFLHCDASDFGIGAVLVQLSEDNEEKPVAFMSKKLSR
FT                 SQRNYSVTERECLAVILAIEKFRCYLELQEFEVITDHSSLLWLMRQQNVSG
FT                 RLARWIFRLQQYKFTMSHRKGKDHIVPDALSRLHDCNEIASLDMSPIINLE
FT                 SDAFQSDDYNQLKSNLEQNSSRFPDIKIVDHKIYIRTEHSTGDEVQDKFLW
FT                 KLWVPEPLKGEVLKQAHDSVTSAHSGIQKTIEKLRRNLFWPGLAKDVRDYI
FT                 KNCSVCKQSKAPNYTLRPPMGAQSPTYRPFQRLYIDLLGPYPRSKSGHVGL
FT                 LIVLDHFSKFHWLWPLKKLTSSVIQEFLLKHIFHSFGVPETIVSDNGKQFK
FT                 SNEFNAFLTELGIRHIYTALYSPQSNAAERVNRSLLAAIRSYLESDQTYWD
FT                 QHISSISCALRSALHQSIGCSPYRALFGLDMITHGSDYKLIKQLTLLEEPL
FT                 VPLSRSDNLSLIRKDIQANIKQAYERNVKQYNLRSKPVTFREGQEVYRRNF
FT                 SLSKFAHNYNAKLAPQFLKCRVKKKLGNCFYLLENLQGQEIGTFHAKDIKQ
FT                 "
XX
SQ   Sequence 5657 BP; 1782 A; 1105 C; 1155 G; 1614 T; 1 other;
     taaatttttg gcgcccaacg tggggcctgg aagtatgcag ctttataggc atcacgcttt        60
     cagagtccca attttttatt gttcaaatag tcaatactgt ctgttctcta ttcgcagaga       120
     aagagttggc tgtttgaaac acccattttg gtgatggttg aaaaactcag tgtccagagt       180
     gctgaaatag attggacttg cttggtcggc ctatcgcaac tgtgacagat gagtcaaatm       240
     aattcttaat agggactacg aagctgaaag attcgagctg aatctcagac cgagaaaccc       300
     gaataagata aattcaactt ataataacac ctgtatcacc atgtttgctc gtttgtcttc       360
     gtatagttgt tatttcatct agatattatt ttaattgtgt tttgtaaaat tatcagatac       420
     gattccagaa tattgtatat tgggcccagc tcggatatca atactgattg ttctctggta       480
     gttgttgcag ggccaaatga gatgaatctg ggtgcaatat aaactcatac ccgtctggcc       540
     agtagatgtt gttatgacag aagttgctaa atgttgagag tgttgtctgg aacttgtgta       600
     tatgctgcat tggcgtatcc ttgccgaaca ctcacacttt agttagcttt tgcatagcaa       660
     tactctataa ccagctttag tagcaatagc ccaaaatcca ttgtttcccc taattgtata       720
     atatagcaag aacagcacac aacagcacaa aacctagcta ccttccccat tatatcaacc       780
     caaacttgtt acattcatta gcaaatcaaa aatatttaga tacaaaatgc ctatttcaag       840
     aagtcctcaa gatatgcgca cagtagagaa aactgttagt ttgtgtagtc tttgtagcca       900
     agggatgagc aatacccagc aatgttattg taccccttgt aagcacaatt ttcacaagtt       960
     atgtctagaa cagtggctgg aaaataagca agaatgtccg gaatgtcagt ccacattgga      1020
     cccaaggtca attaagctgg ttattggtaa ctgttcacct gacccgaaac cagcttcaac      1080
     atcagcaatt ccaggtagtt cgcgtatggt aacgcgtaat ttagccaaag cattaggtga      1140
     agttccgcct gagtctctag agcatcccca agagcgatcg ctcgaaggca gtgaggtaat      1200
     tatatccggt ttagatgcaa gccataattc tgaccgaaac gtagttcctc ctccaagagg      1260
     cattagtacc cgccgacgag gccgacccaa tcgagccggc catactcgtc aagaatcagc      1320
     aggcgttgat tataatataa ttcagcaaat gatcgagcag tcagtcactc gtgtgatgtc      1380
     ggcgctccgt attgattcac ggcccagctc aagcgagcag ctgccgtcta ttccgactcc      1440
     tatggcatac tcgccaggag gctcgtctgt ccaaagcaga agaacagctg acattatgca      1500
     gaaatggaat ctccattttg atgggtcatc tgaaggacta ggagtggaag aatttattta      1560
     tcgtgtgaga gtccttactg acgaaactct cgatagtgat tttatggggc tttgcaaaca      1620
     tttgcacatt cttttctctg ggaaagctag agattggttc tggaggcacc ataaacaggt      1680
     agatagaatt gtatggaatg atttttgtgc agcacttcga cagcaatata aagattatcg      1740
     ctcagaattt atgagtaaag agttagtgag agctagaaag caaaaggtcg gtgaatcttt      1800
     tgtcgctttt cacgattcgg tggctgcatt aattgataaa tttggcctca aaataggcga      1860
     agaagaatta ttagaaattc tgcaaaataa cctgttgcct gagatgcggc acaagttact      1920
     gtaccaatct atcagttccg ttggccattt gcgtaggtta gtgcaaatga gcgaaaattt      1980
     aacaaatgac cttataagtc aatcagacaa tttctctcga ccaaaaactg ttgcgtttcg      2040
     tcgtcaaatt aatgaaatcg agaatactgg tctcggaatt gaggttgaag aagagacaga      2100
     ttcagcagag ttagaaattg cagcgatgca aaaagcccat tccaacttga catgctggaa      2160
     ctgtgaagaa aagggacatg tctgggaaaa ttgcctgagg gatcgtagag tcttttgtta      2220
     tggttgtggc acaccacagg tatacaagcc acaatgtaaa atttgtatcc gtaggttagc      2280
     ggaaaaccag cagaagggga catcccccaa aaatcggatg cccccgaatt aatagaccca      2340
     atcagcaaca atctcgcgtc atcattacaa tcttcaaatg aaattgatgc acgggtgctt      2400
     gatctccgtt ttctcccata caaggacaag ctatctaaat atcttgaaat acgaagaaga      2460
     atttttaatg aaccaaattc ggttatgagt aagcgtagtg ccaggttgag aaaatactat      2520
     agagaaataa aaagtagacg taaattagta atctcaaaca tatttagcaa tcaaaaagat      2580
     atgcgcagtt atgcgaaagt atcttttttg aattttcaag aatcaggctt actagatact      2640
     ggcgcaaata tcagttgcat tggcgctact ctagcggaaa atgacttttc aaaaagtcct      2700
     tgtttcaagt cgctcaaatc ttttgtaaaa actgcaggtg gtgaaaatca agcagtcata      2760
     ggagttttga gtgttgtcat gcaatataaa gcaatatcaa agcccatgaa actgtatgtt      2820
     atcccaaaca ttaaacagaa tttaattctc ggccatgact tttggaaaac atttgccctt      2880
     gctccagata ttatcagtgc tgtagaagca gacctcgatg ttgttgacga agatgttgaa      2940
     ggtaaatatc cactaacaag ccttcagtta caacagctca atgcagttaa gcagttgttt      3000
     cccaatgctg cagaaaagtt aggtcgcaca tcacttatca aacatcacat tgacgtggga      3060
     gaagcaatgc cagtaaagca acgcttttat cctgttagtc ctgcagtcga gcagttgcta      3120
     tataaagaaa tcgatcggat gattagccta ggtgtgatag agccctcaac cagtgcatgg      3180
     agttccccta tgagattagt tgtaaaacca aacaaagttc gtctttgctt agatgcccga      3240
     aagcttaacg cggtgaccaa aaaggacgca tatccattgc ctagtataga tggaatcttt      3300
     tcgagattgc caaaagctaa cattatctcc aaacttgatt taaaagacgc ctattggcaa      3360
     atagaactga cggacgactc aaagccactg acagctttca cagtaccagg tagaccacta      3420
     tatcaattca aggttatgcc gtttggtctg tgcaatgcgc catcaacgat gtgtaggcta      3480
     atagatgaaa tcattccccc tgatttacgg aattgtgtct ttggatattt agatgattta      3540
     tgcattgtat ctgaagattt caattctcac atctccgtgc tagtacgaat tgcagagcaa      3600
     ttccggaaag ccaatgtcac cttaaatatt gagaaaagcc attttgcagt cacaaaagtt      3660
     aactatcttg ggtacgtaat tgacaagaca ggcatatgca cagaccctga caaaatctct      3720
     tgcatacaaa actggccacc tccgaaaaac ttaaagcaag tgagaggctt tttaggtgta      3780
     tgtgggtggt atcgccgttt tataaaaaac ttttcagacc tagcctgtcc cataactgaa      3840
     gtcttatctt ctaaaaagaa gtttaactgg actccagaag cccaaactgc tatggaaaaa      3900
     ctaaaagctg tgttaactac gtctccagtt ttgcaaaatc caaagtttga tcagaaattc      3960
     tttttgcatt gtgacgctag tgattttgga attggggcag tgttagtaca actttctgaa      4020
     gataatgaag aaaaacccgt agcattcatg tctaaaaaac tcagtcgatc tcagcgtaac      4080
     tatagtgtta cagagcgtga atgtcttgca gttattctag ctatagaaaa gtttcgttgc      4140
     tatttagagc ttcaagaatt cgaagtcatt actgaccact ccagcctctt gtggctgatg      4200
     agacaacaga acgtttctgg acgattagct agatggattt ttcgcttgca acagtataag      4260
     ttcactatgt cgcaccgtaa gggcaaagat cacattgtgc ccgacgcttt atcgcgattg      4320
     cacgattgca atgaaatagc ttcgttagac atgagtccca tcataaattt agaatcagac      4380
     gcatttcagt ctgacgatta caatcaattg aaatctaatc tagagcaaaa tagttcacgt      4440
     tttccagata tcaaaattgt ggatcataaa atctatatcc gaactgaaca ctcgaccgga      4500
     gatgaagttc aagataagtt tttgtggaaa ctatgggtgc cagagccact taaaggcgag      4560
     gtattaaagc aagcacatga tagtgtaacg tcagcacatt caggtataca aaaaacaatc      4620
     gagaaattgc gaagaaatct tttttggcct gggttagcaa aggatgttcg cgattatatt      4680
     aaaaattgtt cggtatgcaa acaatccaaa gccccgaatt atactctccg tcctccaatg      4740
     ggagctcaaa gtccgactta tcgacctttt cagaggttgt atatagattt attagggcca      4800
     tatcccagga gcaaaagtgg acatgtagga ctattaatag tattggacca tttcagtaaa      4860
     tttcattggc tttggccttt aaaaaaattg acgtcatctg ttattcaaga gtttctatta      4920
     aagcatatat tccacagttt cggcgttcca gagaccatag taagcgataa tggaaaacag      4980
     ttcaaatcta atgagtttaa tgcttttcta acggaactgg gaatacgtca tatatataca      5040
     gctttatact cccctcagag caatgctgct gagcgagtta atcgctcttt attagctgct      5100
     attcggtcgt atctcgaaag tgaccagact tattgggatc aacatatttc tagtatctca      5160
     tgcgccttac gatcagcttt gcatcaatcc ataggatgct ccccttatag agctttattt      5220
     gggttagata tgataactca tggttcagac tacaagttga taaagcaatt aacattgctt      5280
     gaagaaccat tagtaccact atctcgatca gataacttat ccctaattcg caaagatata      5340
     caggccaaca taaagcaagc ttatgaacga aatgttaaac agtataattt gcgttctaag      5400
     cctgttacat ttagggaagg gcaggaagtg tatcgccgaa atttttcact tagcaaattc      5460
     gctcacaatt ataatgcgaa attagcaccc caatttttga aatgtagagt gaaaaagaaa      5520
     ctaggaaatt gcttttatct tttagagaat ttgcaaggtc aagagatagg tacctttcat      5580
     gccaaagaca ttaagcaata gacatccgaa catattcccg ctaatattcc gtctaacggt      5640
     ggtatattat cgggtgg                                                     5657
//
ID   Gypsy-21_DMo-LTR repbase;    DNA;    INV; 2702 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-2702
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2966-2966 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. 4-bp TSDs.
XX
SQ   Sequence 2702 BP; 1188 A; 388 C; 407 G; 709 T; 10 other;
     tgtaatggtc gcaagccaaa caaaaaaata agggtaaata aaaataacga aagaaatagt        60
     tcaaaaagta cgcgcgcttg caaaagcttt gaaaaggtac agcgaacctt tttcagtgct       120
     tgcagcgctg cattgagagc tttcggtggg tgccgaaaag ttgtcgcgca cgcgcaacag       180
     ctgatcttgt cgcgctgtgc gaattctgca gcgacaaata ttagtgcagc caactttagg       240
     ggcaataaaa cctgtaagct tttatctacc caaagctata taagccgaaa aagtgcaaaa       300
     ttgagccctt tttctagaac tccacgttgc gactttacac taaatccata tatatatatg       360
     tatataatat atatacatat atggtgagga actcgtgcgc tgcaataatt aataaaggta       420
     cgaagattgg catattgtgg catattagct aaataaagca acttttttct ctagcgcagc       480
     aacaaatttt tcttgacgcc cgtgtcaaat ttgggcacgg caatatagaa aagcctgccc       540
     tagacacggg ctctgtttta atttttttgs cccatcaaga tcgatcgcag caactttatc       600
     gaaaggctgg aggaacttca acagcaggcg ggggaaacac aaacgtgaat agtggcccat       660
     aaattgcata gtgacatagt gatatataaa acatataaaa cttttaaccc caaaaactct       720
     aagccgcgaa aatctaaaag tggaaaaaaa aaaactacac acagccaaga acaaaaactc       780
     taaattctag ttctaccata atcaactaaa cgaaaaaaaa aaaaagaaca aaaaccacac       840
     ttcaattaca tatgtgacgt acactgtaaa aattttgtta ctagcaacta aaatagttca       900
     ccaaattaaa aaaagaaaaa tgtaaaatta aaacccacga cttaaaacta gcatgaaaat       960
     agaaaaaata atacgatgac gtaaaaaaaa aaaaaaaaga aaaaaaaaac atcaataaca      1020
     taataatgaa ataataaamt ttatcatata tatgcatata tatatatata tatagataca      1080
     tatatgcaca tataaamgta gaacaatatc gaaaagsaaa aaatataaaa ctcwtgawgt      1140
     aaaagaaata ataaaagaaa ttwtatataa atgtgtaacc aaaaaaaaaa atataaataa      1200
     aagaaaaaaa tattttkgtt taaaaaaaaa aaataaaaaa taaaaaatcg aaaaagtaag      1260
     aaagaaaaaa ataataataa tttgaataga tataaatatm aaaagaagta taaaaatgta      1320
     aaggtaaaag aaaaaaaaaw gaaacaacaa aaaccgtgtg tttgtccgcc cctatattct      1380
     ttttgtaacc tcaacgccac gctacagcta ccacgaggaa aggcctttca tcgctggagt      1440
     gaaaaaatct aaagatcatg taagtgctgg aagataccct gtactcccac tccccccaac      1500
     cccaaaccat tatatttttt ttacatgaat taatatatac aaaaaaaaaa aaaaaaaaac      1560
     aagtaataat ataatgtttg gaaataattg catgcaagaa tgaagcaaag catatttttt      1620
     tttttaaatt aaaataattt gttttgcaac cacattttta aataaaatta ttaagaccat      1680
     ttttctttat atttatatct atttgtttgc caagtgaatt aaactaaatg atttcaccta      1740
     aattatgaaa aaaaaagagg taaaataaac agagaaataa ataaataaat aaataaagta      1800
     gataaataaa ccaaatttaa taagttaaat ctatataaat atatatctat atataaatat      1860
     atataaaaaa aaaaataata ataataataa taatcatatt aaataaaatg aacaattaaa      1920
     taaattaatg aaataaataa aacaaactta gcatgaaatg aggaaaaaaa aaatgagaat      1980
     ataaatatga aataaataaa taacaaataa ataggattga atagcaagaa agatttacga      2040
     tagaaaatag aacaatttaa agaatagcat aaaaaaaaaa aaaaagagaa aaaaaaaaaa      2100
     aaaaaaacaa aaaactaata ataatgtaaa ataataatgt agaataataa caacattgtt      2160
     tgtataagaa aaataatcga ttgtaatctt agtatcccaa tgtctagata ttatttaaat      2220
     gaatggaaat gaatattatg aataatagga atgaaaccaa gaacaatatg agtcattaat      2280
     ctggaagaag ggttgaaata atggggtagg ctagttagtg ttggagcttc tttggggttt      2340
     ttctggtaaa attgtttgtg aaaaaccatg gttgggtggg taaagagcgc gtgtgccgaa      2400
     tgccatctat ggccacgctt agttgtgtcg gtgttcttga tgtaaatttg tgcccgttct      2460
     tcccctaatt cctcagtata atttgttttt tttttcgtgg agtatagctc cacctcgagt      2520
     ttaagggatc ttacaaatta aaatttatga actctgatcg caaggcagaa aagaaccccc      2580
     ccacactccc gacgagcgac ggcacaagaa ggtcccgctt atctgccttg cgaccgaaaa      2640
     acaaagccaa gtcagtgctt tgtagagaga gtctctctgc tgaatgaaca cttttgttta      2700
     ca                                                                     2702
//
ID   Gypsy-21_DWil-I repbase;    DNA;    INV; 4264 BP.
XX
AC   scaffold_181130;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DWil_;
KW   Gypsy-21_DWil-LTR; Gypsy-21_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4264
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181130; Positions   44904   40641.
XX
CC   Positions [1819-2361] - Reverse transcriptase
CC   Positions [3379-3855] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           259..4263
FT                 /product="Gypsy-21_DWil-I_1p"
FT                 /translation="MSPPLRTPAKSKNEKNEKKIVEKKTLNETFGLVEDEE
FT                 SIKNNMEVKDVSDVEKSDPRDLDIKMQQLIHMFSPKIEADERKYAEVKINP
FT                 EHFEKVVCVFDGYNVPVEKWFENFEQNAEAYELTDKQMYVQARNKMSGAAQ
FT                 LYLESETVSDFQSLRQMLCCEFESNLSSADLHQQLRDRKMHSGESFHEYML
FT                 NMRKIASAGKIEDAAVIRYIVDGLNIKSEFKFSMYNCKSLKERIKERMQYG
FT                 VFEHVKKFDNIEKNNRKITSIAKVENIKKKEYCFNCGSSEHKRKDCNSADR
FT                 KCFSCNESGHISTNCPRKLSAVRKINIQKRVKSVSLNGVNVDGLIDTGSDV
FT                 TIVKNSFLKYLGKIDLKESCLMLCVLGKSQTKAKSFFETEVIVDNLKTQQK
FT                 FLVVESNTMDCDVILGYDFVEKFRVSIDERGYTFMSLVEDTKSQEEYADNW
FT                 YNVFDISCSYSAPPQYQKQVEALIQDSFQLNDAEKVNCPIELKIVPDGAII
FT                 PFRQSPSRLSSPEAGAVKNQVDEWEENGIVRKSTSNVASRVVVVKKKDNTL
FT                 RVCVDYRKLNSIVLEDCFPVPLMDEVLEKLQAASFYTIMDLENGFFHVPIE
FT                 ESSKSYTAFITREGLYEFNRAPFGFRNSPALFIRFVNHIFQDLINKNIMQL
FT                 YMDDIIVYAKSANECLNKTKLVLETAAKYDLKIKWGKCSFLQKRITFLGHE
FT                 IEDGKIWPGKDKTMAISRFGIPTNVKSIQAFLGLTGFFRKFIPQYAQIARP
FT                 LTKLLKKDVKFIMGPSELQALQQLKTVIISEPVLHLYSREAPTELHTDASK
FT                 DGFRAVLLQLFDNNLHPIYFWSKKASEADSKRHSYILEVKAAYMALKKFRH
FT                 YLLGIPVKLVTDCIAFKQTTSKLDIPREVAQWILYLQDFNLNVEHRSAVKM
FT                 QHVDCLSRFPQSCLVVKDEITAHLKKAQQTDDHIIAIIEVLKQQPYKSFNV
FT                 KSGLLFKEVEGNELLVVPKLMEREIIQRSHEVGHFSTRKTMHAIHQQYWIP
FT                 HLESKVSRLIANCIKCIVHNKQLGKKEGYLHCITKGVTPLHTLHLDHLGPM
FT                 DNTSKQYKFILAMVDGFSKFVWLFPTKSTGQEEVIKRLNEWTDIFGFPERI
FT                 ISDRAVAFTSNAFKEFLRSNDVEHVLSTTGVARGNGQIERVNRCILSIIGK
FT                 ISADEPTKWYKGVSQVQKAINTTMHSSTKMSPFEVLFGTRMRNHIDDRLLD
FT                 ILQEEQVDQFNDERQKLRQEAKINIEKAQATYKRNYDKNRKGEAIYQVGDM
FT                 VAKKRTQFVAGRKLASQFLGPYEVIKAKRNGRYDVKKATNGEGPMVDYMRL
FT                 WRYVAENDELLSSESEDDYQEGR"
XX
SQ   Sequence 4264 BP; 1473 A; 695 C; 992 G; 1104 T; 0 other;
     tttgggggct cgccggtttt gtttgtgtta gtgcaggtgt aatgtggaga aagtgattag        60
     aaaatgaaaa tgtggttgtg ctggaattta aaaaaacaat aaagttgtaa agttgcggtt       120
     gattttgtaa aagttggtac aaaacatcca aataaaagtt gtacagttgt gaaaattcca       180
     gtagtgcgcg gtagcttttc taagaaatcg ttctcgaaca gtcgatcagt cggcgccacg       240
     aagtcgcgaa aaaccgaaat gtcgccacca ttgcgcacac cagcgaagtc gaaaaacgaa       300
     aagaacgaaa agaagattgt tgaaaagaag accttgaacg aaacgtttgg tttagtggaa       360
     gatgaagaat cgataaaaaa caatatggaa gtgaaagacg ttagtgacgt agaaaaaagt       420
     gatcccagag atctagatat aaagatgcaa cagttaatac acatgttttc tcctaaaatc       480
     gaagcagatg agagaaagta tgcagaagtc aaaataaacc ctgagcattt cgaaaaagtt       540
     gtatgtgtgt ttgacggtta caatgtaccg gtagagaaat ggtttgagaa ctttgaacag       600
     aatgccgaag cttacgagct cacagacaag cagatgtatg tgcaagcgag aaataaaatg       660
     agtggtgcgg cacagttata tctcgagtca gaaacagtga gtgattttca gagtttgaga       720
     caaatgttgt gttgtgagtt cgagtcaaat ttgagtagcg ctgacctaca tcaacagcta       780
     cgcgatcgta aaatgcacag tggtgaatcg tttcacgaat atatgctaaa tatgagaaaa       840
     attgccagtg ctggaaaaat cgaagacgcg gcggttatac ggtacatagt tgatgggctt       900
     aatattaaaa gcgagttcaa gttctcaatg tacaattgta aatcgctaaa agaaagaata       960
     aaagaaagaa tgcaatatgg tgtattcgaa catgtaaaaa aatttgataa tattgagaaa      1020
     aacaatcgaa aaatcacgtc tattgcaaaa gtggaaaaca ttaaaaagaa agaatattgt      1080
     tttaattgcg gttccagtga gcataagcgt aaagactgta acagtgcgga tagaaaatgt      1140
     tttagttgta atgaaagtgg acatatttca actaattgcc ccagaaagtt atcagctgtt      1200
     cgtaaaataa atatacaaaa acgggtcaag tcggtgtcgt tgaatggcgt aaatgttgac      1260
     ggtttgatcg atacgggctc agatgtcact attgtaaaga actcttttct aaaatacttg      1320
     ggtaagattg atttaaaaga aagttgctta atgctctgcg tcctaggcaa aagccaaaca      1380
     aaagcaaaaa gctttttcga gacagaagtc atcgtggata acctaaagac gcagcaaaaa      1440
     ttcttggtag tggagagcaa cactatggac tgtgacgtta ttttgggata cgactttgtg      1500
     gagaagttta gagtatcgat cgatgagcgt ggatatacat ttatgagcct ggttgaagac      1560
     accaaatcgc aagaagaata tgctgacaat tggtacaatg tttttgacat ctcatgtagt      1620
     tattcggccc caccgcaata tcaaaagcaa gtcgaagcgt tgatacagga tagctttcag      1680
     ctgaatgatg cagagaaggt aaattgtcct attgaattaa aaattgtacc agatggcgca      1740
     ataatcccat ttaggcagtc acccagtcgt ttgtcgtcac cagaagcggg agctgttaaa      1800
     aatcaagttg atgagtggga agaaaacgga atagtgcgca aatccacttc gaatgttgct      1860
     agcagagttg tagttgtaaa gaagaaagat aatactttgc gggtttgtgt agactacagg      1920
     aagctaaata gcatagtctt ggaagactgc tttccagttc ctttaatgga tgaagtgcta      1980
     gagaaattgc aggcagcaag cttttatacg attatggatt tggaaaacgg attcttccat      2040
     gtgcccatag aggaatctag caaatcatat acagcgttta ttactagaga aggattatac      2100
     gagtttaata gagcgccatt tggatttcgt aattctcctg ctttattcat tcgtttcgtt      2160
     aaccacatat ttcaggatct gattaacaag aatataatgc aattatatat ggatgacatt      2220
     atagtatatg ctaagtcagc aaatgagtgt ctaaacaaaa ccaaattggt attagaaact      2280
     gcagcaaagt atgatttgaa aataaaatgg ggaaaatgta gttttttgca aaaacgcata      2340
     acctttctag gtcacgaaat tgaagatgga aagatttggc ccggtaaaga taagacgatg      2400
     gcgatcagtc gtttcggaat tcccacaaac gtcaaatcga ttcaggcatt tcttggttta      2460
     accggattct ttagaaagtt tattcctcag tatgcgcaga tagcacgacc ccttaccaag      2520
     ttgctgaaaa aagatgtcaa gtttattatg ggtccaagcg agcttcaggc gttgcagcaa      2580
     ttgaagacgg tgataataag tgaaccagtg ttacacctct attctcgaga ggcaccaacc      2640
     gagttgcaca cggatgcttc aaaagacgga tttagagcag tactacttca gctatttgac      2700
     aacaatttac atccgattta tttttggagt aagaaagcat ctgaagcaga ttcgaagagg      2760
     catagctaca ttcttgaagt caaggcagca tacatggcgt taaaaaaatt tcgacattat      2820
     ttgctaggga tcccggtgaa attggtgaca gactgcattg catttaagca aactacgtca      2880
     aagctggaca tcccaaggga ggttgcgcaa tggatattgt atctacaaga tttcaatttg      2940
     aacgtggagc accgatcagc agttaagatg cagcacgtgg actgtttaag ccgtttcccg      3000
     cagtcgtgct tagtagtaaa agatgaaata acagcgcatt taaagaaggc acagcagaca      3060
     gatgatcata ttatcgcgat tatagaggta ctaaagcagc aaccatataa aagcttcaac      3120
     gtgaaaagtg gtttgctatt caaagaagtt gaaggtaatg agttattggt tgtaccaaag      3180
     ctaatggaac gcgagataat acaacgatcg cacgaggttg gacatttttc gacgcgcaag      3240
     acaatgcacg ctatccacca acagtactgg ataccgcatt tggaaagtaa agtatcaaga      3300
     ttgattgcaa actgcataaa atgtatagtt cataataaac agctgggtaa aaaagaagga      3360
     tatttgcatt gtataaccaa aggagtcaca ccgctacata ctttacattt ggatcactta      3420
     ggacccatgg acaacacctc caaacagtac aaattcattt tggcaatggt agatggtttt      3480
     tcgaaatttg tatggttgtt tccaacgaag tccacaggtc aggaagaagt aattaaaaga      3540
     ctcaacgaat ggacagacat ttttggattt cccgagagga tcataagtga cagagcggtg      3600
     gccttcacat caaacgcttt taaagaattc cttcgatcaa acgatgtaga gcatgtactg      3660
     tcaactacag gagtagcaag gggcaatggc caaatcgaac gagttaaccg ttgtatcctg      3720
     tctattatcg gaaaaatatc agcagatgaa cctacgaaat ggtataaagg ggtttctcaa      3780
     gtacagaagg ctattaatac aacgatgcat tcatcaacga aaatgtcacc ttttgaagtc      3840
     ctgtttggaa cgagaatgcg taaccatata gatgaccgtt tgctggatat attacaggag      3900
     gaacaagtag atcagttcaa cgacgagcgt caaaagctac gacaagaggc taagattaat      3960
     atagagaagg cgcaagcgac ttacaagagg aactatgata agaacaggaa aggcgaagct      4020
     atctaccaag ttggcgatat ggtagctaaa aagagaacac agtttgtagc gggccgtaaa      4080
     ttggcaagtc agtttttggg accctatgaa gtgatcaaag ctaagcgcaa cggccggtac      4140
     gatgtaaaga aagcgaccaa tggtgaaggg ccaatggtgg actatatgag actttggcga      4200
     tatgtggctg agaacgacga gttgctgtct tctgagtcag aagacgatta tcaggagggc      4260
     cgag                                                                   4264
//
ID   Gypsy-21_DWil-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   scaffold_181130;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DWil_;
KW   Gypsy-21_DWil-I; Gypsy-21_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-269
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181130; Positions   40640   40372.
XX
SQ   Sequence 269 BP; 96 A; 44 C; 59 G; 70 T; 0 other;
     tgtaaagacg agatgggcac actgatctga gattgcccct attttgatga ggcgtgtagc        60
     agcggagagt gagaagcatc taagagagag agtcgaaggg cagtcgtcgt cgagaacggg       120
     caagatataa acgggttacg agagcgttcg gcagttatga aatcaattat tattctcaaa       180
     gaaatataca tatgtactac acctcaattt aaacatttca gttaatatta tatacaataa       240
     actattacaa atataatgtt aacctcaca                                         269
//
ID   Gypsy-21_DY-I repbase;    DNA;    INV; 9271 BP.
XX
AC   chrU;
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DY;
KW   Gypsy-21_DY-LTR; Gypsy-21_DY-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-9271
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1830-1830 (2012).
XX
DR   Genome; chrU; Positions 3030210 3020940.
XX
CC   Positions [6843-7319] - Integrase core
CC   LTRs are 88% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..1016
FT                 /product="Gypsy-21_DY-I_4p"
FT                 /translation="MSSWVYMATKPELAEYASEFGLDPLGKSEELRRTLAA
FT                 FSKRTDHTEATKKKLTLLAEKYKKEKSPTRHPEIVITETNTRMDDGKETKM
FT                 EGKMETGTIDRVRNWGIRYQGTTNPLEFLEKMEQWATGYGLRHDQLVQTMP
FT                 FILEGSAIDWWNTTPTKIDSWVQLRTELLEYFLPPRHEEQLQTQIAQLRQR
FT                 ENEPVREYAMNLRKLMRFTKLSEAEKLDWVYKNCRTKLKLYTRRNGFTTLT
FT                 EFLKLAEEVEEIEQTGAQTEQTGPQALRPEVCMRCGGTGHTARTCGNPPRL
FT                 FCWACGRNGVRTTECCRAKAGNGGGLGQ"
FT   CDS           3929..5563
FT                 /product="Gypsy-21_DY-I_3p"
FT                 /translation="MASWYRRFIPKFTEQAGPLQELIRKGKKFEWNKRHQE
FT                 SFDSLKESLTKAPVLVFPDFSRQFKLQTDASDVGIGAVLTQETEDGEHVIS
FT                 FASRKLSKAEQNYSATEKECLAIHWGIGKFKMYLEGYHFIVVTDHMALRWL
FT                 NSIKSPAGRIARWALGLQPYQFEVQYRKGKLNVVADTLSRAPPAELKAIRN
FT                 TESWIDRKNRELQEDPGNTEYRREGKRLYKLSKDRWDQHPWKLCVPEEEIQ
FT                 QILAENHCQAEAGHMGMFKTARRIRNKYFWPQLTKDVRKFVRSCESCQQYK
FT                 VEQQKAAGKMLTRVAEAPWETVCVDFVGPLPRSKHGNTTLLVMVDKFSKWV
FT                 ELAAIRQATADSFLRVFRERIVTRYGAPKILISDNGVQFTGRKTKKEMERW
FT                 GIRQQFTAPYTPQENPTERTNRTIKTMIAQITGEDQTNWDNKIPELMLAFN
FT                 SSTSESTKYSPAQIVLGKELRIPNTVFDKETEGSGLKEESMEERWKRLGNV
FT                 RKEAAGHMEKAAEQQRRHYDLRKREWKPSRGELVWCRTHHLSNAYSTQS"
FT   CDS           1064..2503
FT                 /product="Gypsy-21_DY-I_2p"
FT                 /translation="MRCDGYQIVAQFGIGCRSAKGIIDTGATRSTISRNMF
FT                 QDLRGEGQWIRINAEISLADGSRRKAIGGFGARVEFGGRRFEITFMILPNV
FT                 DGGILLGMDFLAGAGSTLRCGGLELEIRGVEDERRKEGRNKGEATTLREPS
FT                 EEEIDTFLEENKRIFENMEGVSNAAVHRIYLKDEKPIKQRYYPRNPKQQAI
FT                 IDEQVDELLSLGLIERSRSPYSAPVVLVRKKNNEWRMCIDYRLLNDRTEKD
FT                 AYPVPRMNFILDQLREAKFISTIDLKSGYWQIPVEEKSRQYTAFTVPGRGL
FT                 FQWTVMPFGLTTAPATFQRALDNIIGPEMEPFAFAYLDDIIVIGRTKEEHL
FT                 AKLKEVFSRLQRANLRINPDKCKFFQKELKYLGHVVSDQGIRTDPEKVEAI
FT                 RDLPAPKTTKEVHSFLGMASWYRRFIPKFTEQAGPLQELIRKGKKFEWNKR
FT                 HQESFDSLKESLTKAPVLVCPNFRQTPATWGSEPY"
XX
SQ   Sequence 9271 BP; 3205 A; 2046 C; 2589 G; 1411 T; 20 other;
     ggtggcgccc gaacaggcta aagtggtgat ttgaggaaac cgacgccggg agagtgatgt        60
     ctagttgggt gtatatggca acaaaacccg aactagcaga atacgcgagt gaattcggat       120
     tggatccgtt agggaaaagc gaggagttac ggagaacatt ggctgctttt tcgaagagga       180
     cagaccacac agaagcgaca aaaaagaagc tgacactgct ggcggaaaag tataagaagg       240
     agaaaagccc tacccgacat ccagagatcg tgataacaga gacaaacaca aggatggacg       300
     acgggaagga aacaaagatg gaaggaaaaa tggaaacggg aacaatcgat agagtgcgga       360
     attgggggat cagataccag gggacgacaa acccgctgga attcctcgag aaaatggagc       420
     agtgggccac cggatacgga ctacggcacg atcagctggt ccaaacaatg ccgtttatac       480
     tggagggaag cgccatagat tggtggaaca cgacaccaac aaagatcgac tcatgggttc       540
     aattgagaac ggaactgtta gagtacttct taccaccgag gcacgaggag cagttgcaaa       600
     cccaaatagc acagttgaga cagagggaga acgagccagt aagagaatac gcgatgaacc       660
     tgaggaagct catgaggttc acgaaactgt cagaagctga aaagctggat tgggtataca       720
     agaactgcag gaccaagcta aaactgtaca cgaggaggaa cggattcaca acgctaacgg       780
     agttccttaa gctagccgag gaggtggagg aaattgaaca aacgggagca cagaccgaac       840
     aaacaggacc acaggcacta agaccagagg tatgcatgag atgcggagga accggtcata       900
     cggcccgcac atgcggcaac ccaccaaggc tgttctgctg ggcgtgcgga cgaaacggag       960
     tcaggacaac ggagtgttgc cgagctaagg cgggaaacgg aggaggcctg ggccagtaaa      1020
     gctggcagct caggcaagaa gaataggtcc agcaacaggc gagatgagat gcgacggcta      1080
     ccaaatagta gcacaattcg gaatagggtg taggagtgcc aagggcataa tagacaccgg      1140
     agcaacgaga agcacgatca gtaggaacat gtttcaggat ctaagaggag agggacagtg      1200
     gatcaggata aacgcggaaa tatcgctggc ggacggatca cggcggaagg cgatcggagg      1260
     atttggagca agagtggagt tcgggggtcg gagattcgaa ataacattca tgatcctacc      1320
     gaacgtcgat ggcggaatcc tactagggat ggactttctg gcaggagcag gaagtacact      1380
     gagatgtggc ggattagaat tggagatacg aggggtcgaa gacgagagga ggaaggaggg      1440
     gcgaaacaaa ggagaggcga cgacgctacg agagccgtcc gaagaggaaa tcgacacatt      1500
     cctggaggag aacaagcgca tatttgaaaa catggaggga gtcagcaacg cagcagtgca      1560
     caggatatac ctcaaggacg aaaaacctat taaacagagg tattatccaa gaaatccgaa      1620
     acaacaggcc ataattgatg agcaggtaga cgaattactc agcctgggcc taatagaacg      1680
     atcacgaagt ccatacagcg caccggtggt attagtaaga aaaaagaata acgaatggag      1740
     aatgtgcatc gactacaggc tgttgaacga taggacagag aaggatgcat accctgtgcc      1800
     acgtatgaat tttatcctcg accaactgag ggaggccaaa tttataagca ccatcgactt      1860
     gaagtcgggc tattggcaaa tcccagtgga agagaaaagt agacaatata cggcgtttac      1920
     ggtaccaggg cgaggattgt tccaatggac agtaatgcca tttggactaa ccacagcgcc      1980
     agcaacgttc cagagagcac tggataacat catcggacca gagatggagc cattcgcctt      2040
     cgcgtacttg gatgatataa tcgtgatagg acgaaccaag gaagagcatc tagcaaaact      2100
     gaaagaagta ttcagcagat tgcaacgagc gaacctacgg atcaacccag acaagtgcaa      2160
     atttttccaa aaggaattaa aatatctggg acacgtagta agcgaccagg gcatacgaac      2220
     ggaccccgaa aaggtggaag caattaggga tctaccagcc cctaagacca ccaaagaggt      2280
     acacagcttt ctcgggatgg catcatggta taggagattt ataccaaaat ttacggagca      2340
     agcaggaccg ctacaggaat taatccgaaa agggaaaaaa ttcgagtgga acaaacgcca      2400
     ccaggaatcc ttcgacagcc taaaggagag cctgacaaaa gcaccggtat tggtatgccc      2460
     gaacttcaga cagacgccag cgacgtgggg atcggagccg tactgaccca ggaaacagag      2520
     gacggtgaac acgtcatatc atttgccagc cggaaactga gtaaggcaga gcaaaactac      2580
     agcgcaacgg aaaaggaatg cttggcaatc cattggggca tcggaaagtt taagatgtac      2640
     ctggaaggat accacttcat agtagttacg gaccatatgg cgcttagatg gctaaactcg      2700
     atcaagagtc cggcaggaag aatagcacga tgggcactgg gactccagcc ataccagttc      2760
     gaggtgcaat atcggaaagg gaaactaaat gtagtagcag acacactgtc tagagcccca      2820
     ccggcggaac taaaggcgat cagaaacacg gaaagctgga tagaccggaa gaatagggag      2880
     ctacaggagg acccaggaaa cacagaatac cggagagaag gaaaacgtct gtataaactg      2940
     agcaaagata gatgggacca acacccatgg aaactgtgcg tgcctgaaga ggagatacaa      3000
     cagatcctcg cagagaacca ctgccaggcg gaagcagggc acatgggaat gttcaaaacg      3060
     gcaagaagaa taagaaacaa gtacttctgg ccccatttaa caaaagacgt gcggaagttc      3120
     gtgcggatct tctatagttg ccagcagtac aaagtggagc aacaaaaagc agcagggaaa      3180
     atgctgacca gggtcgcaga agccccctgg gaaacagtat gtgtcgactt tgtaggaccg      3240
     ttaccacggt caaaatatgg gaacacgata ctactcgtca tggtggataa gttctcaaat      3300
     tgggtggagc tggcagccat cagacaggct actgcagact gattcctacg ggtctttcga      3360
     gaaagaatag tgacacggta ttgtgttccg aaaattctga tatcagacaa tggtgtccaa      3420
     ttcaccggac gcataacaaa gaatgagatg gagagatggg gaataagaca tcaattctgg      3480
     gctctttata ctccgctgga gaactcacgg aaagaactaa taggactgta aaacaatgat      3540
     cgcctaataa caggcgagga cagacaaatt gggataatat aattaccaga actattgctg      3600
     gcgttcaaca tctagcactt ggaatccaca aatatacagc ccggnnnnnn nnnnggagcc      3660
     cattcgccct tcgcgaactt ggatgatata attgtgatag gacgaaccca aggaagagca      3720
     tctagcaaaa ctgaaagaag tattcagcag attgcaacga gcgaacctac ggatcaaccc      3780
     agacaagtgc aaatttttcc aaaaggaatt aaaatatctg ggacacgtag taagcgacca      3840
     gggcatacga acggaccccg aaaaggtgga agcaattagg gatctaccag cccctaagac      3900
     caccaaagag gtacacagct ttctcgggat ggcatcatgg tataggagat ttataccaaa      3960
     atttacggag caagcaggac cgctacagga attaatccga aaagggaaaa aattcgagtg      4020
     gaacaaacgc caccaggaat ccttcgacag cctaaaggag agcctgacaa aagcaccggt      4080
     attggtattc ccggacttca gcaggcagtt caagttgcag acagacgcca gcgacgtggg      4140
     gatcggagcc gtactgaccc aggaaacaga ggacggtgaa cacgtcatat catttgccag      4200
     ccggaaactg agtaaggcag agcaaaacta cagcgcaacg gaaaaggaat gcttggcaat      4260
     ccattggggc atcggaaagt ttaagatgta cctggaagga taccacttca tagtagttac      4320
     ggaccatatg gcgcttagat ggctaaactc gatcaagagt ccggcaggaa gaatagcacg      4380
     atgggcactg ggactccagc cataccagtt cgaggtgcaa tatcggaaag ggaaactaaa      4440
     tgtagtagca gacacactgt ctagagcccc accggcggaa ctaaaggcga tcagaaacac      4500
     ggaaagctgg atagaccgga agaataggga gctacaggag gacccaggaa acacagaata      4560
     ccggagagaa ggaaaacgtc tgtataaact gagcaaagat agatgggacc aacacccatg      4620
     gaaactgtgc gtgcctgaag aggagataca acagatcctc gcagagaacc actgccaggc      4680
     ggaagcaggg cacatgggaa tgttcaaaac ggcaagaaga ataagaaaca agtacttctg      4740
     gccccagtta acaaaagacg tgcggaagtt cgtgcggagc tgcgagagtt gccagcagta      4800
     caaagtggag caacaaaaag cagcagggaa aatgctgacc agggtcgcag aagccccctg      4860
     ggaaacagta tgtgtcgact ttgtaggacc gttaccacgg tcaaaacatg ggaacacgac      4920
     actactcgtc atggtggata agttctcaaa atgggtggag ctggcagcca tcagacaggc      4980
     gacggcagac tcattcctac gggtctttcg agaaagaata gtgacacggt atggagctcc      5040
     gaaaatactg atatcagaca atggagtcca attcaccgga cgcaaaacaa agaaagagat      5100
     ggagagatgg ggaataagac agcaattcac ggccccttac actccgcagg agaaccccac      5160
     ggaaagaacc aataggacca taaaaacaat gatcgcccaa ataacaggcg aggaccagac      5220
     aaactgggat aataaaatac cagaactaat gctggcgttc aacagcagca cgtcggagtc      5280
     cacaaaatac agcccggcac agatagtgct gggaaaggaa ctacgaatac ccaacacagt      5340
     gttcgacaaa gaaacggaag ggtccgggtt gaaagaggaa agcatggagg aaaggtggaa      5400
     acggttagga aacgtgagga aggaagcggc aggccacatg gaaaaagcag cagaacaaca      5460
     gagacggcac tacgacttaa gaaaaaggga atggaaacca tcgagaggag aacttgtgtg      5520
     gtgcagaaca caccacttat ccaacgcata ttcaacgcaa agctagcccc aaactacgac      5580
     ggaccatgga aagtggtagg gtttgtgtcc ccggtaatac tgtcagtcaa ggacccgaaa      5640
     acacgaaaga caaaacgagt atatatcgga gacaccaaac cacacataag cacggacaac      5700
     catcatagag ggttcgaaca ggagaacgat acatcagatc agcaccaacg ggcacactaa      5760
     aaaagaggga aaaaggagaa gtgaaggcag gcacactaag gcaactccgg tggcctatat      5820
     aagcggagcc aggatcgtac gaaggcacag aaggcgatcg gctgagcaat ggataagttc      5880
     gagaccagcg tcaaaaggta taaggataac ctcaccaagg cagcagcagc aacaagcagg      5940
     accaagttga tcgagccacc tgcctgcggt acagtccgga aaaggacggc gccgccgaaa      6000
     ttggcacctc ctcggcgacc gacgaggcac gacgcggcga ctcccaagca gacggatacc      6060
     gtccagggag gccgaagcgg cgcaagcgat cactcaggac ccaagggacc accagcccgg      6120
     aggggggcga atcatcccgc aaaggcaccg acgcagacgg aaatcgtcca accgggcctg      6180
     agcggggtnn nnnnnnnntt gctagccgga aactgagtaa ggcagagcaa aactacagcg      6240
     caacggaaaa ggaatgcttg gcaatccatt gggggatcgg aaagtttaag atgtacctag      6300
     aaggatacca cttcatagta gttacggacc atatggcgct tagatggcta aactcgatca      6360
     agagtccggc aggaaggata gcacgatggg cactgggact ccagccttgc cagttcgagg      6420
     tacaatatcg gaaagggaaa ctgaatgtaa tagcagacac actatctaga gccccaccgg      6480
     cggaactaaa ggcgattaga aacacggaaa gagaccggaa gaatagggtg ctacaggagg      6540
     atccaggaaa cacagaattc cggagagaag ggaaacgcct gtataaactg agcaaagata      6600
     ggagggacca gcacccatgg aaactatgcg tgcctgaaga ggaggtacaa cagatcctcg      6660
     aagagaacca ctgccaggcg gaagcagggc acatgggaat gttcaaaacg gcgagaagaa      6720
     taagaaacaa gtacttctgg ccacagttaa caaaagacgt gcgaaagttc gtgcggagct      6780
     gcgagagttg ccagcagtaa aaagtggagc aacaaaaggc agcagggaaa atgctgacca      6840
     gggtcgcaga agccccctgg gaaacagtat gtgtcgactt tgtaggaccg ttaccacggt      6900
     cgaaacatgg gaacacgaca ctactcgtca tggtggataa gttctcaaaa tgggtggagc      6960
     tggcagccat cagacaggcg acggcggact cattcctacg ggtgtttcga gaaaggatag      7020
     tgacacggta tggagctcca aaaatactga tatcagacaa tggggtccaa ttcaccggac      7080
     gcaagacaaa gaaagagatg gagagatggg gagtaagaca gcaattcacg gccccttaca      7140
     ctccgcagga aaaccccacg gaaagaacca ataggaccat aaaaacaatg atcgcccaaa      7200
     taacaggcga ggaccagaca aactgggatg ataaaatacc agaactaatg ctggctttca      7260
     atagcagcac gtcggagtcc acaaaataca gcccggcaca gatagtgctg ggaaaggaac      7320
     tacgaatacc caacacagtg ttcgacaagg aaacggaagg gtccgggttg aaagaggaaa      7380
     gcatggagga aaggtggaaa cggataggaa acttgaggaa ggaagcggca ggccacatgg      7440
     aaaaagcagc agaacaacag agacggcact acgacttaag aaaaagggaa tggaaaccat      7500
     cgagaggaga acttgtgtgg tgcagaacac accacttatc caacgcatat tcaacgcaaa      7560
     gctagcccca aactacgacg gaccatggaa agtggtaggg tttgtgtccc cggtaatact      7620
     gtcagtcaag gacccgaaaa cacgaaagac aaaacgagta tatatcggag acaccaaacc      7680
     acacataagc acggacaacc atcatagagg gttcgaacag gagaacgata catcagatca      7740
     ggaaagcggg aaaaaggaac tcaagacggc ccaccaacgg gcacactaaa aaagagggaa      7800
     aaaggagaag tgaaggcagg cacactaagg caactccggt ggcctatata agcggagcca      7860
     ggatcgtacg aaggcacaga aggcgatcgg ctgagcaatg gataagttcg agaccagcgt      7920
     caaaaggtat aaggataacc tcaccaaggc agcagcagca acaagcagga ccaagttgat      7980
     cgaaccacct gcctgcggta cagtccggaa aaggacggcg ccgccgaaat tggcacctcc      8040
     tcggcgaccg acgaggcacg acgcggcgac tcccaagcag acggataccg tccagggagg      8100
     ccgaagcggc gcaggcgatc actcaggacc caagggacca ccagcccgga ggggggcgaa      8160
     tcatcccgca aaggcaccga cgcagaagga gatcgtccaa ccgggcctga gcggggtgac      8220
     caaccaccca acgggaacca ctggcggagc agacccgagg gggatgagcc aggaaggaag      8280
     ggcccaggcg atgacgggaa acgtccgaat gggccggacc agagtggcgc acctcccgag      8340
     ggctggaggg gaacacccga ggagaagccg ggagccaggc gaacggtggg cgctgaatca      8400
     gcaagcacag acccgtacac cgacgacagg tatgagcagg gtagcagcgg gcactccgcc      8460
     aacccggagg gccgaaaaga cgagagccgt ggaatcagcg tcgccggaca gagatatcct      8520
     ggagctccac acagagacca ccaacgagtt ggggtggaca gtgccaaccg gagccgggtt      8580
     atcgaaggaa atactggcga agattagggc gaacctggcg aacaaaccaa aaaggaccca      8640
     acggcgatgg atccaaaaag acggagaaag gtattggcgc atcacatcca accggggaaa      8700
     ttatgtgacg gtgaagcgtc acttcccaaa ggagggggga gtgtgacgcg gccgcgcaca      8760
     ataataaata ataataataa taataaataa caaacaataa ataaaacata ataaatactt      8820
     cataatacat actaaataat tcaatacaat aacataattc ataataaata attcataata      8880
     aacaagtcat aataaataat acataataaa taataaataa taccgaatac atgagacata      8940
     ataaataaaa cataataaat aaggcataat acataataga taaaaccata acataatcat      9000
     aaacaaggcc agattcaaac aaggcgcgca agcgcgccca aataactaga ggggcacacc      9060
     aatcccgaaa cccggccaca ctaagtcggg caattcgaac atacggacat acgggtacac      9120
     taagccacgg gctatataaa gcgggcggct ggcctcagaa tagtcagtca gtggaagtca      9180
     ccagcgagcg ggaaagcagc aggatcagga caggatcgac gagtggtaac tattggagag      9240
     taagatcaac cccctacgta taattctctg t                                     9271
//
ID   Gypsy-21_DY-LTR repbase;    DNA;    INV; 642 BP.
XX
AC   chrU;
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DY;
KW   Gypsy-21_DY-I; Gypsy-21_DY-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-642
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1831-1831 (2012).
XX
DR   Genome; chrU; Positions 3020939 3020298.
XX
SQ   Sequence 642 BP; 172 A; 154 C; 151 G; 165 T; 0 other;
     tgtgctgact taagggtcca aattacgtat ctacgctgac ttaagggtcc gaattacgta        60
     tctacgctga cttaagggtc cgtataattc tctgtgctga cttaagggtc caaattacgt       120
     atctacgctg acttaagggt ccgaattacg tatctacgct gacttaaggg tccgtataat       180
     tctctgtgct gacttaaggg tccgtataat tctctatgct gacttaagga tcctacatat       240
     aattctctac gctgacttaa gggtccgaca tataattctc tacgccgact taaggggtcc       300
     cacaatatag gcttacgttg attcaagggt actcgacgaa attcggagcg gccgcgtagg       360
     aaagaccgcg tccccggacg gagacgcgag gtacgaagag cctcgctgcg gaagccggaa       420
     cctaggccga gggagcccgt acagttttat atataattat tgtaacccag aaattgaatg       480
     aataaactgc gtctagattt aagcctagtt aaggtaaact ctacacatta tcactgggac       540
     tcgggtcggg aattcctctc tagcaccact gtcctgaaag aaagaaattt cctggacgac       600
     cctggccagc cctgactacc cgaggcacgg ctgaacgtca ca                          642
//
ID   Gypsy-21_DYa-I repbase;    DNA;    INV; 5041 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DYa_;
KW   Gypsy-21_DYa-LTR; Gypsy-21_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5041
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 1376980 1382020.
XX
CC   Positions [4059-4535] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           644..1720
FT                 /product="Gypsy-21_DYa-I_1p"
FT                 /translation="MYDLRPTSLIRNLPGGNADNSNISTNTIDYGSSGNVN
FT                 ISNAPTIAIGNGLGGNPDGNQEERPFTRAGSTVSLSHAKEAAIDFEGNICA
FT                 RNWVEHLKNIGLIYNLTDDCLRMLFVTKLKGNAQRWLHVNPTRMLETFERL
FT                 CEQLIVAFGETASKSKLRRRFEQRKWQRNERFTMYFEEKKMMSQTVNMDME
FT                 ELLEHLIEGIPSASLRDQARIQRFANPEQMLLAFANVRLPQQAGSYVPKKS
FT                 TSEAVVNNLRCRNCNSKGHFAKDCRKPARAPGSCFACGEMGHFVGECRLRK
FT                 SNINSNTNNYVRRLKIFFVYFTNLPIIAECLIDSGSAISFIKESKIPVEVA
FT                 LKAVNQVYHGINKSQL"
FT   CDS           2982..4928
FT                 /product="Gypsy-21_DYa-I_2p"
FT                 /translation="MDKCEFMQSSIKYLGFLITKEGIRADDKGIEAITNFP
FT                 IPGKVHNVQSFLGLCSYFRRFIKDFSTLAKPLYDILRKDKEFVFEQRELDC
FT                 FLNLKKKLIEAPVLAIYDHKDEVELHCDTSATGFGAVLMQRKEDGKLHPVF
FT                 YFSKRSSETKAKYHSFELETLAIIYSLRRFRIYLQGRHFKILTDCDSLTLT
FT                 LNRVELNPRIARWALELQNYDYELIHRSGTKMQHVDALSRCNILIVETTSF
FT                 EDNLLICQSKDLKIQKIKEDLEKNQHKLFEMRNGVVYRKTNDDRLLFFVPE
FT                 EMENHVLHKYHNELGHIGRDKMIDAISRTYWFTNIKEKCKDHIENYLKCVA
FT                 FSPNTGKSEGFLHSIPKGDKPFELLHIDHYGPVAAGRANKHIFLVVDGFTK
FT                 FVKLYTTKTTSTKEVLKALSDYFRAYSKLKCIVSDRGSWFTSNEFAQFLTE
FT                 SNIKHLKIATGSPQANGQVERINRTIGPMIAKLTEPENGIHWDNVIEQVEY
FT                 AINNTVHRSIKQVPSKMLFGVEQKGQIIDEFRERLEEINDTVQVENLEEIR
FT                 KRARDNQNRAQAYNETYYDKTKKKPKYYRKGDYVMVKNFDSTAGVARKLIP
FT                 KNKGPYVIDKILRNDRFLLKDVEGFQVSRNPYKGVWSAQNIRPWIGKRTNS
FT                 "
XX
SQ   Sequence 5041 BP; 1851 A; 912 C; 1038 G; 1240 T; 0 other;
     aattcagaag tggtcgaacc tacgaaatga atcaggccga tctcaacaaa ttttccgtca        60
     cccaattaaa aaggtggctt tcggcgttgg gtttaccaac ccaaggtatt aaatcggagt       120
     taatggctcg cctagggcaa gtaccgcttg tacagcgagg aaatatgcca gaagaagatc       180
     ggcccggcac cggaccgcaa agcatcatcg atcctgaaaa tgaaacaaat tcgtcacagg       240
     aaggcgtttc cgagaatgtt ccagaacaaa atgaacttct cggaattatc acacagctac       300
     gaacaacgct tattacgcag gaaaatgcgt tgcatcaagc agagacgcgt agcgcattgc       360
     aaaaacaaca gctagagctt cttagcgccg ccatacatac acaacagcag aacgagacac       420
     gcgccggcac acatacacaa cagcaagaga cgcgcgccgc cacacacata caacagcaag       480
     aggagacgcg cgccgccaca aacacacaac agcaagagga gacgcgcgcc gccacacaca       540
     cacaacagca agagaagcgc gccgccacac acacacacaa cagcaagaag agacgcgtgc       600
     cgccacacac acacagttac aacaagagca gacagtttcc aacatgtacg atttgcgccc       660
     taccagccta attagaaatt taccaggtgg caacgctgac aattcaaaca tctcaacgaa       720
     cacaatagac tatggatcaa gtggcaacgt caacatttcg aatgccccaa caatcgctat       780
     tggaaatgga ttgggtggca accctgatgg caaccaggaa gagaggccat ttaccagggc       840
     tggatcaaca gtttcacttt ctcatgccaa agaagctgcc atcgatttcg aagggaacat       900
     ttgcgcacgc aactgggtgg agcacctcaa aaatatagga ctgatctaca atctaacaga       960
     tgactgccta cgaatgctgt tcgttaccaa acttaagggt aacgcacagc gttggctaca      1020
     cgtcaaccca actcggatgc tagaaacttt cgaaaggctg tgtgagcagc tgatcgtagc      1080
     atttggagaa acagcgtcga aatcaaagct gcgccgaaga tttgaacagc gaaaatggca      1140
     aaggaacgag cgatttacca tgtacttcga ggaaaagaaa atgatgtccc aaaccgtcaa      1200
     catggacatg gaagaactgc tcgagcatct cattgagggg atcccatcgg cgagcttacg      1260
     cgatcaagct cgcatccaaa gattcgccaa tccggagcaa atgctgctag catttgccaa      1320
     tgtacgcctc ccgcaacaag ctgggagcta cgtaccaaag aagtcaacat cggaggcggt      1380
     ggtcaacaac ctgcgttgca ggaactgcaa ctccaagggc catttcgcca aagactgccg      1440
     caaaccagca agggcacctg gatcttgctt cgcttgtgga gaaatgggcc attttgtggg      1500
     agaatgtcgt ctaaggaaaa gcaacatcaa cagcaacact aacaattatg taagaaggtt      1560
     aaaaattttc tttgtttatt tcactaattt acccattatt gcagagtgtc tcatagattc      1620
     agggagcgcg atatcattca ttaaagaatc caaaattcca gttgaagtag ctttgaaagc      1680
     agttaaccaa gtgtatcatg gaataaacaa gagccagctt taaatatttg aaaaaacttt      1740
     atgtttcata ttaaaagaaa aaataaaaat tcaattcgaa atggttgtcg tcgctaatga      1800
     atcaatgaga tacgatgtag tcctgggaag ggattttatg aatcaatatg gtttgagcat      1860
     caatctagac acccttggcg ttaatgaaga tattaataat atgattaaaa tatttgggga      1920
     aaatgatcaa caactggcaa atgccgtagt agccaattgc gatgtcagcg aaactgttag      1980
     ggaaaatgaa actcttgagg aaaaactgtt aggaaatgaa actgttacgg aaaatgagat      2040
     tgttagggaa aaactgttag gaaataaaac tgttacggaa aatgagatcg ttaggatatg      2100
     catcttttaa ggaaaaattt ttaaaaaatg aaacgtttac ggaaaaattt gtagaaagtg      2160
     aaactcttaa gagaaaattg ttagagaatg aaacttttag gaaaaaaatg tcagaggata      2220
     caactgatga gatacaacga agtgaaagaa tagaaatttt aggagacaac tttgaaactg      2280
     aaatgctgaa catcaaattt gttgatgatc agtttttaga ctataactgc gggtgtgatg      2340
     taagttatga aacgacatgc aaatttgtta aaatgttcga agaatcttac gtcaatgcga      2400
     agagaccaga tagtccattt accagatgcg aaatgaaaat tagtttagaa aaatccaaac      2460
     cattcagttg ctcgcctagg cgactttcat ttagtgaaaa ggagcagtta caaaaattat      2520
     tagacgaata tttagacaaa ggcataataa gaaacagtga ttcagaatat gcttccccct      2580
     ttgtgctagt gaagaaaaag actggagact tgcgtttatg tatagactat agaaaattga      2640
     acaaaatttt aataaaagac aattatccgt tacctttgat agatgatctt ctagacaaga      2700
     gatttaaaga atggatattt tcacgtattc gttgacaatg attcaattaa atacacatcg      2760
     ttcgtgactc cgttaggaca atttgaattt ttaaggatgc ctatgggcat caagaacgca      2820
     tcagcagtat tccaacgctt tgtaaacaaa atttttgctg atttgatacg cgaaaacaaa      2880
     gttatcgtat acatggatga cataatgata gccagtgcaa acatggaaga acattaaagg      2940
     atgtgttcat aagactagtc aataacaaat tagaacttcg tatggacaaa tgcgagttta      3000
     tgcaatctag tataaagtac ctaggatttc ttatcactaa agaagggatc agagcagatg      3060
     acaagggtat cgaggcaatt acaaactttc caattcctgg aaaagtacac aacgttcaaa      3120
     gttttctagg attatgttct tattttagaa ggtttataaa agatttctct acgttagcaa      3180
     aaccacttta cgacatttta agaaaagaca aggaatttgt ttttgaacaa agagagctag      3240
     actgtttctt gaaccttaag aaaaaactga tagaagcacc cgttttagct atttatgatc      3300
     ataaagatga ggttgaattg cattgcgata ccagtgctac gggttttgga gcggttttaa      3360
     tgcaaaggaa agaagacgga aaactccatc ccgtattcta tttttcaaag cgaagttcag      3420
     agactaaagc gaagtatcac agctttgagc tggaaacttt ggctattata tactcgttgc      3480
     gtagatttcg aatctattta caagggagac atttcaaaat actaactgat tgcgattcct      3540
     taacgcttac attaaacaga gtcgagctaa atcctagaat cgcccgatgg gcactcgaac      3600
     ttcaaaatta tgattacgaa ctgattcata gatccgggac aaaaatgcaa cacgtagatg      3660
     ctctgagcag atgcaacatt ttaattgtag aaaccactag ttttgaagac aatttattaa      3720
     tctgccaatc aaaagattta aaaatacaga aaataaagga agatttagaa aaaaatcagc      3780
     ataaactgtt tgaaatgaga aatggagtag tgtacagaaa aacaaatgac gatcgtttat      3840
     tattctttgt cccagaggaa atggaaaatc acgttttgca taaatatcat aatgaacttg      3900
     gtcacattgg tagagataaa atgatagatg cgatttcgag gacttattgg ttcacaaaca      3960
     tcaaggaaaa atgtaaagat cacattgaga attacctaaa gtgtgtagca ttttctccaa      4020
     acactgggaa gtcagaaggt ttcctacaca gcattcctaa aggagataaa ccatttgaat      4080
     tattgcacat agaccattac ggaccagtag cggcaggaag agcgaataag cacatatttt      4140
     tagtagtaga cggtttcacg aagttcgtta aattatatac aacaaagaca actagtacca      4200
     aagaagttct aaaagcttta tccgattatt ttagggcata tagcaaacta aaatgtatag      4260
     tttcagatag aggtagttgg ttcacatcaa acgaattcgc acaattttta acagaatcaa      4320
     acattaaaca tctaaaaatt gcaacaggtt ctccgcaagc aaacggacaa gtggaacgca      4380
     taaacaggac aattgggcca atgatagcaa agttaactga gcctgaaaat ggtattcatt      4440
     gggacaatgt aatcgaacaa gtagaatatg cgatcaataa cactgtacac agaagtatta      4500
     aacaggttcc tagtaaaatg ctctttggtg tagagcagaa aggtcaaatt attgatgaat      4560
     ttagggagag attagaagaa attaacgaca cagttcaggt agaaaactta gaggaaatta      4620
     gaaaaagggc tagggataat caaaatcgag cacaggcata taacgaaaca tattatgata      4680
     aaacaaagaa aaagccaaag tattatagaa aaggcgacta cgtaatggtg aaaaattttg      4740
     acagtactgc gggagttgct aggaagttga tcccaaagaa caaaggccct tacgtaattg      4800
     ataaaatact tcgtaacgac aggttcttgc taaaagatgt tgaaggtttt caagtttctc      4860
     gaaatcctta caagggtgta tggagtgctc aaaacataag accttggata ggaaaacgaa      4920
     caaattctta aaggaaatat acactaaaat accgtaattc gttaaatttg ccatataaaa      4980
     taaacaaatt gttataacat aaatgtttag ttctaagaaa ccagttctaa gatggccgaa      5040
     t                                                                      5041
//
ID   Gypsy-21_DYa-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_DYa_;
KW   Gypsy-21_DYa-I; Gypsy-21_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-202
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 1376778 1376979.
XX
SQ   Sequence 202 BP; 68 A; 39 C; 38 G; 57 T; 0 other;
     tgtagtaggc tgaccctctg ggcacactca tatatcgata cttacactac acgatgacct        60
     atgttaaacc gatgttaaac ctatgttaag ataatgttaa gctgatgaac attaagagtc       120
     aatctgtttc tgcgagtcaa ataaagaaga agtatagaaa gaaataaaac tgtcgcgtgt       180
     gtaatctttg ccgccttcca ca                                                202
//
ID   Gypsy-21_HeAr-I repbase;    DNA;    INV; 5807 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5807
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5569-5569 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           708..1934
FT                 /product="Gypsy-21_HeAr-I_1p"
FT                 /translation="MTSLIVELHELHNTLNYLREYLVKLGPERRQQNLGQK
FT                 KIEEAKNLYSSLESILPLLHVEIEREEISTSDITAVHKIISDIHILYNKII
FT                 SLSDPKERVSLSEPVKMSTKREFDLKTAISLLPIMTGQESVTKSLIDCIDL
FT                 YGKMILESSTQELIDFVLKTRLSQSAKLRMKPTYDTVDNLLADMRKYLIQD
FT                 KSQVALQWKLHQCKQGNRSIESFGNELEKLFVDLTIAQTKDSPNSYDVFKK
FT                 TNEKIALKRFADGLSDPRLSTVIAARNFQSLPEAIRTAMDEQSLSSSFEIM
FT                 NIRRHNYANRGNRNFNNSFRGQYNGRSRNNNYYHLSNYNHGNTKPPASGNL
FT                 SPHRGQYTRGRGRTFQRGRSNREFGNKYSRPSVPVQHSIQEPSTSGITNIP
FT                 SQVVTSNSASNDFFR"
FT   CDS           1903..5631
FT                 /product="Gypsy-21_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LPTAHQMIFFVNSNNFIFNFNNSSTVRFLVDNEVINL
FT                 LVDSGASLCVLKYEWLSNYPRLMQQLRHDKITIRGVSGRLESEGYIYLNLV
FT                 FDNEIFSEKFYVFKNMSCTANGILGDNFLKRYGAVINYRDSILQLYKNNRN
FT                 IPIEIHYNARYRHLIPPRCEVIRFIPTSSSSDCVVLSKEVQQGVFVAGLIA
FT                 KPNNGRIPLRILNTTDNEVECDFQDLTIYDINCFAVCNFTENTNSVNRVKT
FT                 LFELLNLSNMNTEEKRSIEHICAKYADVFHLPGDKLSTTNIMTHTISLKDN
FT                 VTPSYIKPYRIPHSLKQEVQKQIEEMLANDIIEETTSEWSSPVLLVPKKSD
FT                 RSNEKKWRLVIDYRQLNNKIKDDKFPLPNITDILDSLAGSIYFSKLDLSQS
FT                 YYQLSLEENSRKYTAFSVDKMYQLELDPESRKYTAFTTDKMYQMKRSPMGL
FT                 KTSPSVFSRLMTIAMSGINYKKAFIYLDDCVVIGKSMENHNKNLITVLERL
FT                 RKVNLKLNPMKCEFLRTEIVYLGHRITSHGILPDDSKIEALRKYPVPVNSD
FT                 DVKRYLAFANYYRRFIPNFSNIAHPLNKLCKNNAEFKWTCECDQSFHKLKS
FT                 ALMSPPILQYPDFSESNIFQLRTDACKTGLGAVLSNSNGHVVAYASRNLSP
FT                 AESRYPIIDLELLAIVWAVRHFRPYLYGRRFKIFTDHKPLVYLFSLKDPSS
FT                 RLTKFRLYLEEYDFEIVHIPGRNNAAADALSRLPKTITCDDLKSIGEQVVS
FT                 VLTRAQTKKLTSQITANNNNLTKESSISSRPDQPDTVEILKKPRDVIELVF
FT                 INERDFKNLFSHYSGIEYCTYVPSRCTIYLNTRSLSTPTELARDLGSLCER
FT                 EYINEILIIKNKENATNIKILASHMKKLQIRVPKILITTDVIRICDHEDKR
FT                 IILNDFHLLPTSGHAGINRMIGNLKKYYFWPGMTNDVVDYVKKCQQCQYNK
FT                 HSNRLVREPMVVTDTANSAFERVALDIMGPLPTDINNNKYILTLQCDLSKF
FT                 VEAYAMQSKDSESVARVFVSNFILRYGVPKEIITDKGTEFLSNIMENVCKI
FT                 LKIKRLNSTPYHHETIGSLENSHKHLGSYLRIQCDRNTVDWSDWLPFWSFS
FT                 YNTTVHSETKYTPFELVFGKCCKLPSDFGISVEPLYNYNDYPKEMKYRLQR
FT                 AQYDAKQNLLQNKLKRKLLYDKKTYSVTYKKGDLILIKNQTGNKLQNIYNG
FT                 PYEVIEEVSPNVKILKDNKEYLIHKNNTKRYFS"
XX
SQ   Sequence 5807 BP; 2065 A; 973 C; 1049 G; 1719 T; 1 other;
     tggcgaccct gctattggaa ccgcttgtag aacatacaca tcaagattga agaacgaaga        60
     ctattaaacc cgattacaag aaagaagatt gcaagactga agaaagaaga tttcaagaca       120
     gaagatttca agaaagaaga tttctagacc tcataagaaa atattttgga gatataccat       180
     gggaaaatct gcgtcaaaag aacaagttgt gatcgcacag aatgctaacg gagcagcttc       240
     ggcaacaact acgcaatacc ataccgaacg tttggaggct atagaattct tgattaccat       300
     agccgtcgtt atattggcaa ttgctataac atactatgtt ctcaagaaat gtaacaaaca       360
     ccatgtgcgc accatgcaac gagaactgaa cagacacaac ttggccacta tctctcgtgc       420
     tgacctgacc accagcgccg tctaagaaga agaagaaaga aggtttggag gtgtccaggg       480
     tatagcccgg cccatcccca caacacaagc aactgcagcc tgagtcatca gcagcgacgc       540
     cgcgcgcaca actccacgtc agcgccaggc cgctcgtcat cagccacgtg ccagcatcgg       600
     tctacgcgca cctcaacgac aagatttgtt taatcggata cgtatgtaat tttcagttat       660
     ttttacttat gttgcataat tagggttatt aaatttagtt aaatattatg acaagcttga       720
     ttgtagagtt acatgaactt cataatacgt taaattatct tagagagtac ttagttaagt       780
     taggacctga aagaaggcag caaaatcttg ggcagaaaaa gatagaagaa gcaaaaaact       840
     tgtattcttc attagaaagt attttgcctc tgttgcacgt agaaattgaa cgcgaggaaa       900
     ttagtacaag cgatatcact gctgtacata aaataataag tgacatacat attttataca       960
     ataaaataat tagtttatct gatcccaaag agcgagtgag tttatctgag ccagtaaaaa      1020
     tgtctacaaa aagggaattt gacttaaaaa ctgctatttc cttattgcca ataatgactg      1080
     gacaggaatc tgttactaag tctctcattg actgtattga cttgtatggc aagatgatct      1140
     tggagtcatc cactcaagag ttaattgatt ttgttcttaa aaccagactt tctcaaagtg      1200
     caaaattacg tatgaaacca acttacgata ccgttgataa cctgttagct gacatgcgca      1260
     agtatcttat tcaagataaa tcccaagtag cattgcaatg gaaattacat cagtgtaaac      1320
     aaggaaatcg ttctatcgag tcatttggca atgaattaga aaaattgttt gttgatttaa      1380
     cgatcgccca aacaaaagat agtcccaatt cctacgatgt ttttaaaaaa acaaatgaaa      1440
     aaattgcctt aaaacgtttt gctgacggtt tgagtgaccc cagattgagt actgttatag      1500
     cagcaagaaa ctttcaatct ttaccggaag ctattaggac tgccatggac gaacaatcct      1560
     tgtcttcatc attcgaaatt atgaacatca ggcgtcataa ttacgcaaat cgtggtaata      1620
     ggaattttaa taacagtttt cgtggacaat ataatggccg atctcgcaat aataattact      1680
     atcatttgtc taattacaat cacggtaata cgaagccacc ggcatcaggt aacctatcgc      1740
     ctcatcgcgg acaatatact cgcggtcgcg gtagaacttt tcagagaggt cgaagtaata      1800
     gagagtttgg caataagtac agtaggccct ctgttccagt tcagcatagt atccaggaac      1860
     catcgactag tggtatcact aatattccga gccaagtcgt gacttccaac agcgcatcaa      1920
     atgatttttt tcgttaattc aaataatttc atttttaatt ttaacaatag tagtacagta      1980
     agatttttag ttgataatga agtaattaac ctcttagttg atagcggagc cagtctttgt      2040
     gtactaaagt acgaatggct tagtaattat cctcggttaa tgcaacaatt gcgtcatgat      2100
     aaaataacta ttagaggtgt aagtggtagg ttagaatcgg aaggctatat ctatttgaat      2160
     ttagtttttg ataatgaaat atttagtgaa aaattttatg tatttaagaa tatgtcttgc      2220
     accgcaaacg gaattttagg agataatttt ttaaagcgtt atggagcagt tattaactat      2280
     agagatagta tattacaact ttataaaaac aatagaaata ttcctattga aatacattat      2340
     aatgctagat atagacattt gataccgcct cggtgcgagg taataaggtt cataccaacg      2400
     tcatcgagta gcgattgtgt agttttatca aaagaagtcc agcaaggagt attcgtagcc      2460
     ggccttattg cgaagccaaa taatggtcgc attcccttaa gaatattaaa tacaacggat      2520
     aacgaagtag aatgtgattt tcaagatctt actatttacg acataaattg ctttgctgtc      2580
     tgtaatttta cggaaaatac aaatagtgta aatcgcgtta aaacattatt tgagttattg      2640
     aatctatcga acatgaacac agaggaaaaa cgtagtatcg aacacatttg tgcaaaatat      2700
     gccgacgttt ttcatcttcc cggtgataag ctatcaacta caaacatcat gacacacact      2760
     atatccttaa aagacaatgt tacacctagt tatattaagc cttataggat tccccactcc      2820
     ctgaaacagg aagtacaaaa acaaattgag gaaatgctag cgaacgatat catagaagaa      2880
     acaacatcag aatggtcgag cccagtctta ttagtaccta aaaagtctga tagatctaac      2940
     gaaaaaaagt ggagattagt cattgattac cgacagttaa ataataaaat taaagatgat      3000
     aaatttccgt taccaaatat aacagatatt ttagattctc tcgcaggtag catttatttt      3060
     tcaaaactag atctttcaca aagctattac caattatcat tagaagaaaa ttcgagaaag      3120
     tatacagcat ttagtgtaga taaaatgtac cagttagagc tagatccaga atcccgtaaa      3180
     tacacggcct tcactactga taagatgtat cagatgaagc gttcgcctat gggtttgaaa      3240
     acatctccca gtgtgttctc aagactaatg actattgcta tgtcaggaat taattataaa      3300
     aaagcattta tttatttaga cgattgtgtt gtaataggaa aatcgatgga aaatcataac      3360
     aaaaacttaa ttacagtctt ggaaagattg cgaaaggtca atttaaaatt aaatccaatg      3420
     aaatgtgagt ttttgcgcac tgaaatagta tatttaggtc atagaataac atcacatggc      3480
     attcttcctg acgacagcaa aatcgaggcg ttgcgtaaat accctgtgcc agtgaactcg      3540
     gatgatgtca agcgatactt agcatttgct aattattata gacgttttat acctaacttt      3600
     tccaatattg cgcatccatt aaataaatta tgtaaaaata atgcagagtt taaatggaca      3660
     tgcgaatgtg accaatcttt tcacaaatta aaatctgctt taatgtcgcc gcctatattg      3720
     cagtatccag atttttcaga atcgaatatt tttcagttac gaacagatgc ttgtaagact      3780
     ggattaggcg cggttttgtc aaatagtaat ggtcacgtag ttgcttatgc gagtcgtaac      3840
     ttatcgcccg cagaaagtag atacccgata atagatctag aactcctagc tatcgtgtgg      3900
     gcagtaaggc attttagacc atatctgtat ggcagaaggt ttaaaatatt taccgatcat      3960
     aagccactag tatatttatt tagtttaaag gatccttcca gtagactaac taagtttagg      4020
     ctatatcttg aagaatacga ctttgaaatt gtgcatattc cgggtcgaaa taatgcagct      4080
     gcagacgcat taagtcgact accgaaaaca ataacctgcg atgatttaaa atctattgga      4140
     gaacaagttg tttctgtgtt gacgagagca caaacaaaaa agctaacgtc tcagattact      4200
     gctaataaca ataatttgac aaaagaatct tctatcagca gcaggcctga tcaacctgac      4260
     actgtagaaa ttcttaaaaa accaagagat gtgatagaat tagtttttat aaatgaaaga      4320
     gattttaaga atttgttttc tcattattcc ggaatagaat actgcacgta tgtaccttca      4380
     cgttgtacta tatacctaaa tactcgatcg ttatctaccc cgacggagtt agcgagagat      4440
     ttaggatcgt tgtgcgaaag agaatatata aatgaaatct taataataaa raataaagaa      4500
     aatgccacaa atataaaaat acttgcaagt catatgaaaa aattgcaaat acgggtaccc      4560
     aaaattttaa taacaacaga cgtaattaga atttgtgatc acgaggataa gagaataata      4620
     ttaaatgact ttcatttgtt acccactagc ggacacgcag ggataaacag aatgataggt      4680
     aatttaaaaa aatattactt ctggccaggt atgacgaatg acgttgttga ctacgttaaa      4740
     aagtgtcaac aatgtcaata taataaacat tctaatcgcc tcgtaagaga gccaatggtt      4800
     gtaactgata ctgcaaattc agcatttgaa cgtgtagcgt tagatatcat gggtccatta      4860
     ccgactgata taaacaataa taaatacatt ttaacattgc agtgtgactt atctaaattc      4920
     gtagaggctt atgctatgca gagtaaggat tccgaatcag tagccagagt atttgtttct      4980
     aatttcatct tgagatatgg agtgcctaaa gaaatcataa cagataaagg tacagagttt      5040
     ttatccaata ttatggaaaa tgtgtgtaag atattaaaaa ttaaacgttt aaattccacc      5100
     ccttaccacc atgaaacgat aggatcgtta gaaaatagtc ataagcattt aggctcatat      5160
     cttcgaattc agtgtgatag aaatactgtt gattggagtg attggttacc tttttggtca      5220
     ttttcttaca atactacagt gcattcagag acaaaataca cgccatttga gttagtgttt      5280
     ggcaaatgtt gtaaactgcc ctcagatttt ggaatttcag ttgaaccttt gtataattac      5340
     aatgattacc caaaagaaat gaaatatcgt ctacagcgag cacaatatga tgccaagcag      5400
     aatttgttac aaaataaatt aaaaagaaag ctgttgtatg acaagaaaac ttactccgta      5460
     acttacaaaa aaggagacct aattcttata aaaaaccaaa ctggaaataa acttcaaaac      5520
     atctacaacg gtccctatga agttatcgag gaagtttcac ctaatgttaa gattttaaaa      5580
     gataataaag aatatcttat acataagaat aacactaaga gatattttag ttaatattaa      5640
     gttttattgt atccttaaat aattttaagt agttttggat cctttttaaa aaaaaaaatg      5700
     tttatttata aatgtcaaag tttataatag ttcatacata gacctatata ttttgttttt      5760
     tttttttctg taaaagggga agggtagcag acctttttcg ggggagt                    5807
//
ID   Gypsy-21_HeAr-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-219
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5599-5599 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 219 BP; 69 A; 37 C; 34 G; 79 T; 0 other;
     tgtaacataa tgtaatctga tattatgtat ttcctttagt aataagttaa aactcacgtg        60
     tacgaatttt gcatcgcttg caacctataa ttaagtgcta cgcaatattg atttattatt       120
     ggttttgtat taatacgttt ttgggggtat tctaataaat gacgccgaac gagtaagacc       180
     tgtttgattt tcaaccacct gaaccaccaa cacattaca                              219
//
ID   Gypsy-21_LH-I repbase;    DNA;    INV; 4638 BP.
XX
AC   ADOQ01012170;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_LH_;
KW   Gypsy-21_LH-LTR; Gypsy-21_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4638
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012170; Positions    7703    3066.
XX
CC   Positions [3692-4105] - Integrase core
CC   'ACAG' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..2373
FT                 /product="Gypsy-21_LH-I_1p"
FT                 /translation="MDAPGEELESNPTRPVDTRALQAELMFLRRERELWER
FT                 ERQLLLREQELARGPRGVPTGGSSGDILSAVGGIRGIKDLLPEFDASDNTF
FT                 WRWRNQLEHLQRTYRLDDDLTRTLIGSRLRGRALTWFYSRAEHVTLNMNDL
FT                 LKEMERMFDLRKGKLSLRRKFEVRVWKRGKSFADYYCKKIILANRVLIAEN
FT                 KILDYLVEGITDLHLRNQARLMRFRSGAELLESFDRVVIEQRKAEDPRPRR
FT                 MEDARMLRRSGAKGTVGVEAGIKCYRCGEAGHTVPQCQQRTCFNCGSLGHM
FT                 ARECPRREPTAVGASVEAAQIALAGMTRAVDLPRSYTVDVSISASDESGNM
FT                 YHYRFNAIIDLGSPISLIKNSRVTSSLCSSADEETNKFFGINGSQLQVCGV
FT                 FCGNVMIKGVCIKIKFYTVPDETMVFDMLLGRDFLACLLIRIALGETVEII
FT                 NVDEMDAINQIMHIDLNDTLRECDELQINPAIGGKYVDEICKAYELSYLRN
FT                 LRAEHRAPEFEMTIVLKHDQPISSRPRRLAFADREALRKILDDLLEREIIR
FT                 PSDSPYANPIVLVRKKDNSYRLCVDFRAINGVTVRDNFPTELIDDNIDQLR
FT                 GKKYFSMLDLRDGFHHVKMHSASIKYTSFVTPLGQYEYLRMPF"
XX
SQ   Sequence 4638 BP; 1225 A; 912 C; 1301 G; 1200 T; 0 other;
     gcaaattcag aagtgggatt cgtgtggact cgcggaacat tgtacatgag ttttcggagc        60
     tgacgcgttt tcgttgcacg cgcggtattg acaagaggcg tatcgcgtga gtgagtgtat       120
     atgcgaggtc tgagtggcga agtttcgatg agacgttgaa ctggtgtgag tacagaggcg       180
     tatcgaccgt taatttaaat agtctgaaaa aaaatttttg ataatggcac cggtacgtga       240
     ttttacggta gcctaagtaa actaagagac attttacgcg aaaacaactt acccatcggt       300
     gggacaaaag ctgaattgat tcaacggata aacgaaaccg aactggatct ctggagcgct       360
     cttgatgaac gtcggggacg ttcacgccct gtcgatctgt taagtcggaa tgacagggag       420
     aacggaggcg agagcgggga cattggcgag atggatgcgc cgggagaaga attagagagc       480
     aatccgacgc ggccggtaga tacgcgtgcc ttgcaggcag agctgatgtt tctccgtcga       540
     gaaagggagt tgtgggagcg agagagacaa ttgctcttgc gagagcagga gctcgcgcgt       600
     ggcccgcgag gcgtgccgac gggtgggtcg agcggcgata tcctttccgc cgtcggcggt       660
     attcgtggaa ttaaggatct gttaccggaa tttgacgcgt ccgataatac cttttggagg       720
     tggaggaatc aacttgagca ccttcaaaga acctatcgtc tcgatgatga tctgacgagg       780
     acattgattg gctcgcgctt gagggggcgt gcactgacat ggttctactc aagagccgag       840
     catgtaacat tgaatatgaa cgatttattg aaagaaatgg aacgaatgtt cgacttacga       900
     aaaggcaaac tgtcgctccg gaggaagttt gaggttcgcg tgtggaagag gggtaaatct       960
     tttgccgact attattgcaa gaagatcatc ctcgcaaatc gagttttgat cgcggaaaat      1020
     aaaattttgg attacttagt cgaaggcata acagacctac atctccgcaa tcaggcgcgt      1080
     cttatgagat tccgatcggg agcggagcta ttagaatcat tcgatcgggt cgttatcgag      1140
     cagcgaaagg ccgaggaccc gagaccgagg agaatggagg acgcgaggat gctgaggagg      1200
     agcggcgcaa aagggacggt cggcgtggag gcgggaataa aatgttaccg atgtggcgag      1260
     gcaggtcata ccgtgccaca atgtcagcag cggacgtgct ttaattgtgg atccttgggg      1320
     cacatggctc gagagtgccc gaggcgcgag ccgacggcgg tgggtgcgtc cgtggaggcg      1380
     gcgcagattg ctttagcggg catgacacgg gccgttgatc ttccccgatc gtacaccgtt      1440
     gatgtgagca tctcggcgag cgatgaaagc ggtaatatgt atcactatag gtttaatgca      1500
     attatagatt tgggatcgcc aattagcttg ataaagaata gtagggtgac gagtagcttg      1560
     tgttcgtctg ccgatgagga gactaataaa ttttttggaa tcaatggttc gcagcttcaa      1620
     gtatgtggtg ttttttgtgg caacgtgatg attaaaggcg tgtgtataaa aataaaattt      1680
     tacacggttc cggacgagac gatggtattt gacatgttgc tcggaagaga tttccttgct      1740
     tgcttgttga tacgtattgc gttgggcgaa actgttgaaa ttattaacgt ggatgagatg      1800
     gatgcgatta atcaaattat gcatattgac ctgaacgata cactccgaga gtgcgacgaa      1860
     ttacagatta acccggcgat cggaggaaaa tacgtagatg agatttgtaa agcgtatgaa      1920
     ttgtcttatc ttagaaactt gcgagcggaa catcgcgcgc cggagtttga aatgacgatt      1980
     gtattgaagc atgaccagcc gatcagttcg cgcccgcgga ggttagcgtt cgcggatagg      2040
     gaggcgttgc ggaaaatttt ggacgatctt ttggaacgag aaattatccg gcccagtgat      2100
     tcgccatacg cgaacccaat tgtgctcgtg agaaagaagg acaatagtta caggttgtgc      2160
     gttgacttcc gtgcgataaa tggagtcact gtacgtgata attttccgac ggaattgatc      2220
     gatgataata tcgatcaatt gcgaggtaag aaatattttt cgatgttgga cctgcgagat      2280
     ggattccatc atgtcaagat gcactcggcg tcgattaaat atacgtcctt tgtaacgccg      2340
     ttaggacagt acgaatacct gcgtatgccg ttttgactaa caaacgcacc gcgtgtgttc      2400
     cagcgtttcg ttcattcgat attcgcgcca ttggttaaag aaaataagat cttgctctac      2460
     ttggataacg ttctgattgc gacggaaaaa atggatgagc atatcgcgct tttacgtcgc      2520
     gtttttgagc tggctggaag atatcgttta caattccggc tggataagtg ttgcttcgcg      2580
     cggacggaga taagatactt gggctattgt gtcagtcggt cgggcattcg cccgagtgat      2640
     aacaatgtcg aatcggtgtt aaattatcca gttccgcgaa gcaccaaaga agttcatcgg      2700
     tttgttggct tggccagtta ttttcgtcga ttcgttcccg cattttcggt attggctaag      2760
     cctttatacg acctcattaa aaggaaggaa ggatctcatt caagttcgga gtttcggaaa      2820
     atgctgcgtt tgaggcgctc aaaaaccatt tatccagtag acccttgttg gcgatttact      2880
     ctccgcacgc ggaaacggag ttgcactgcg acgcgagtgc tagcggcttc ggtggaatct      2940
     taacgcagaa gcaggacgga gcatggcggc cggtatcgta ttggagtcaa acgacgcccg      3000
     cggaatcgaa gtatcacagc ttcgagctcg agtatctcgc ggttgtatat gctatcaaga      3060
     ggtttcatgt ttatcttgcc ggaagaaaat ttagggtcat aactgattgc gatagtttcc      3120
     gccttacttt aaataaaaaa gatgtaaatc ctcgaatatc tcggtgggct ctctttctgc      3180
     aggactatga ctgcgagatc gttcatcggt cgggaaaatg tatggcccac gtcgatgctc      3240
     tcagccgttg tcattgcgta cttgtactcg agggcagtac tcttgagcgt acgttggccg      3300
     tctgtcagga ccgcgacgag gctattattt caattcgtaa cgaacttgag aagggcgacg      3360
     tcaaatatta cgaattgcgc gacggcctca tgtaccgaaa ggatcggaac aaaaaattac      3420
     tgttctatgt accccaatcg atggaaacaa gcgtgatcag aagctgccac aatgatcttg      3480
     gccatgtggg tctcgacaag gtcatagata atattggaag agtttactgg tttccccgca      3540
     tgcgagagaa agtacgagaa tatattgcta attgtttgcg ttgcattgaa ttttcgccct      3600
     cgagcggaaa ggcggagaga tatttacaca gtattccaaa ggaaaaagtg ccctttgcga      3660
     caatccatgt cgaccacttg gggccttttg aggaaaggga taccgacatt tgttcgttgt      3720
     gatcgatgct tttacgaagt acgttcgact ttatccgtgt aagtccaccg gcaccgagga      3780
     atcgatcagc catcttcgca attatttccg tgcatatagt gggccgaagc gtttaatttc      3840
     cgatcgagga acttgttaca catcggatgc attcaaacaa ttcctggagt ctgaggtggt      3900
     cgaacatgtt ttggtagccg tgggtacgcc cagggccaat ggacaggtgg agcggtttaa      3960
     ccggctaata acacctatct tggcaaagat gtgtgatacg ccttccaaat gggaccgtgt      4020
     tttgcgtgaa cttgaatatt cgataaacaa cactgtttgc cgtggaactg gcgagactcc      4080
     cgctcgccta ttgtttggga tcgaacagaa ggggaaagca cgcgatgcat tacgagattt      4140
     gttgcgagat cgacagaata tagacgagaa gcgcgatttt gaccgtctgc ggggaaatgc      4200
     cgctcttgcg attgagaaag ttcaagagca aaatactgtg cgatataatt tgcggcgaaa      4260
     agctgcgcga caatatagaa tcggggaata cgtcaatatt cgaaatgtag aaactacggt      4320
     cggggtgaat aaaaaacttt taccaaaatt taagggccct tacattgtaa agaaagttct      4380
     tgacaatgat cgatatgtta tcacagatgt cgatagtttt caattgacac agcgaccgta      4440
     tactggcgtg gtcgctccgg atcagatgcg ccttatttaa gaatctaaag aaaggagatt      4500
     ctgcactctc ttgcgtaaac gagaccaatc gtgaaatgtg tgtatttatg acgaagtatg      4560
     cgagcggata ttgcctgatg tatgtgtgaa tgtgtgtgtt tatttggcca agacggccag      4620
     cggtcagaat ggccgagc                                                    4638
//
ID   Gypsy-21_LH-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   ADOQ01012170;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_LH_;
KW   Gypsy-21_LH-I; Gypsy-21_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-299
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01012170; Positions    3065    2767.
XX
SQ   Sequence 299 BP; 67 A; 57 C; 93 G; 82 T; 0 other;
     tgtaagcaca ttatgtattt atctatgtta ttggtttacg gccttctcga gtcttggcgt        60
     gttttggtcg gtgcccgttg cggagtccga gcggactcgc tgtatgtgtg agtgtgcgtg       120
     tggactggcg cgaaagatgc gtgtgatcag ctgattgggc cggctggctg accgtgcgga       180
     cgaggaatta cggagggaga ggattctgat gagagatcag aacgatttcg aaacccgacg       240
     aataaagaat acgaaaagaa atctgtctag tttgttcgtg tcctgacaat ccgcctaca        299
//
ID   Gypsy-21_LMi-I repbase;    DNA;    INV; 5086 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5086
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(905..1516,1494..2144,1930..5085)
FT                 /product="Gypsy-21_LMi-I_1p"
FT                 /translation="MQSHSVNSVRRNGRFPSHSSQSSPSDSYNSTGRAEQT
FT                 VNSSQCKSATQRSPRRVRQSNVNNGRQRSFQKNVRKSCPQCVSRHKRAQCP
FT                 SRNAICYQCGKSGHVQTVCMQNKNSKNGAVRNSASQSARTVHAVNVIHAVD
FT                 LDSASLDSQMQESSSAPTAKLCSEPRRKRRRARKTVQRKRVRDKQNDYVQC
FT                 NPVVNLVPSATSPLCLLQLLHCKSAQYCVASDSRLDVATQSNFSAVAGESG
FT                 VASHACAEADPAVVPSRDSVINLLCADSAPLPSVRSPRMRKCSKQTVSDVA
FT                 HIRAPVVRHKQKLFVTLSIENKTVQFQLDTGSAVTLMNKDTYELLGSPKLS
FT                 PSQQVLTAYTGQNIPVLGTCSLPASFQGVTKTCFCSSSGQIYTEHFWTRCI
FT                 RLVWLINSKRCASNFVSSASGQNQCIVQHIQDKIFPCWERVACPPLFKVLP
FT                 KRAFVVLQAKSTQNIFGLDAFDLFGLSIQRDVLQISSVVPQDKINALCEKY
FT                 SDLFSPELGCAKDFVAHVTLKESAVPKFRKARPVPIALRDKVAEELKRWQD
FT                 SGVISPVSASQWASPLVILTKPTGKLRLCADFKSTVNSQTIVDTYPLPRPE
FT                 ELMDKLGQSRFFSKIDLAEAYLQIPLDDESKKFFVINTHMGLFQFQRLPFG
FT                 SSSAPAIFQRFLEQLTVSVPCCSNYLDDIVVSGRTVEEHLSNLECLFKVLT
FT                 AAGLRCNKAKCSFFQTEIEYLGYVINAQGIHPLQSHLRAIKDLPPPKNVHE
FT                 LQAVMGKLNYYFRFIPNASQIAAPLHRLRRKNVPFVWSKDCQVAFDKLKSA
FT                 LLSDACLIPFDPQKPVVLAVDASSYGLGAVLSHRIGSHDRPIAFASKLLTP
FT                 TQQNYSQIEKEALAIIYGVTKFHHYLYGRKFYLLTDHKPLTKPIPPRTAQK
FT                 LQRWSLILSNYQYEILYRPTTKHANADTLSRLPVGQDVSFDSSEMACCQID
FT                 SRDASAVADFPLNSRRVAQETAADADLSVVARFVRSGWPARAKDIERPLVR
FT                 RYFAQRHALSLSQGVLLLHTDNDQTRVIVPRSLQREVLRLLHQGHWGIVRT
FT                 KQLARRHCTWVGMDAQIESMTSQCTVCAEHQAAPPQRFSDWPRPKGPWQRL
FT                 HIDFAGPFWNTRWLIVVDAFSKFPFVIAMNSTTASSTISALTSVFCIEGLP
FT                 ETIVSDNGPQFVSAEFQQFCRVNGIQHITTAPFHPQSNGEAERFVRTFKSH
FT                 MEKMKGQHSRQQALQIFLSTYRCMPRDGPSPAELLHGRRHRTLLHLLQPPT
FT                 HRVGSYGASRFQVSTPVLYRVFAGKKRWLPGTIQRVLGRNMYVVRSSTGSE
FT                 LRRHANQLRLHRPRDPVSGFLIPDPVHRQGAQPHRSPPGPASPDYEIVPMD
FT                 VDAPPPLSPPQMXASPRGTPGPCVPPPPGPRTSEEDDLLPLGGGVRPSPGF
FT                 GGFPGGSQGGYRGADGVSIPASATTPVPPVTPPPRPSSQCRRRGPQPYATT
FT                 ARRFGGGG"
XX
SQ   Sequence 5086 BP; 1247 A; 1320 C; 1216 G; 1301 T; 2 other;
     gtggcgacga ggagcgatag aagaaccttg gaccagcccg cttgcagcag ccagacagca        60
     gcagtcggag cacgcagaaa ttgctcccgc ccacccaccc ttattataag atttttgggg       120
     gaacatattc tgttacgtgt tttgtggact tttttgttgc agagagtcct ctttcacatt       180
     gcatttgtgt tttgttctaa ttttcttgta tgcgcggcgc ctaatcggtc agcatggcca       240
     ctaccccgaa cccaaactta atggaaatta ttcagttaca gacggcgcaa atcacgcaac       300
     tactccaagc ggtgtcccag ttgacggcgc aggcagctca gcaacaacag ccgtcgcatc       360
     agccgcccac atctgccgcc gcaccgcttc ctacgtttcg ccagtacgac gaacgtgagg       420
     aagaatggag cgattacttg gcgcaatttc aagaactcgt cgcggctcat caacttacag       480
     gtcagacagt caagcatctg ttcttatcag tggtgggcac caagaccttc gtgttactgc       540
     agaaactttt cccccacgca tctcctcgcg atctagactt tgatcaactg tagatgcact       600
     gaatgctcat tatgagagaa aagttctcgt agctgcggcg cggtaccgat ttttcagact       660
     gaaaaaaatc accggagcag tcacaccagc aatggatcac ggagttgaag ggcttaaccc       720
     gcaaatgtaa atttacttgc tcttgtggac tttcttatag tgacgtkatg ttgagagatg       780
     cattacgcag aacattcagg accccagaat tagggcagcg attctgaaac agtctgaccc       840
     ttcattagac agtgtactgc agcttattga agcgcatgat acctttgact tagcagatgt       900
     agaaatgcaa agccacagtg ttaactcagt gcgccgcaac ggacgctttc ctagtcacag       960
     ttctcagtct agccctagtg attcttacaa ttctaccggc cgtgctgaac agacagtgaa      1020
     cagtagccag tgtaaaagcg cgacacaaag gtcgccccgt cgtgttagac aaagtaatgt      1080
     gaataacggg cgccaacgct cttttcagaa aaatgttcgt aaatcttgcc cccagtgtgt      1140
     atctcgccac aaacgtgcgc aatgccctag tcgcaacgcc atctgttatc aatgtggcaa      1200
     atcaggacat gtacagacag tgtgtatgca gaataaaaat tctaagaacg gtgccgttag      1260
     gaacagtgct tcgcagagtg cgagaacagt tcatgctgta aatgtcatac acgctgtgga      1320
     cttggacagt gcttctcttg attctcaaat gcaagaaagt tcttctgcgc ctacggcaaa      1380
     actatgtagt gagccacgtc gcaagcgccg tcgagcgcgt aaaactgtgc aacggaaaag      1440
     ggttcgggac aagcaaaatg actatgtaca gtgcaatcct gtagtgaacc tagtgccttc      1500
     tgcaacttct ccattgtaaa agtgcccagt actgtgtagc tagtgacagt agacttgatg      1560
     tagctactca aagtaatttt agtgcagtag ctggtgaatc tggggtagcc tcgcacgctt      1620
     gcgcggaagc cgatccggcg gtagtgccat ctagggacag tgttattaat ctgctgtgtg      1680
     ccgattctgc gccgcttcct tccgtacgca gcccgcgcat gcgcaagtgc agcaaacaaa      1740
     ctgtatcaga cgttgcccac attcgcgcac ctgtcgtgcg ccacaagcaa aaactttttg      1800
     tgactctttc catagaaaat aagactgtgc aatttcagct cgacactggt tccgctgtca      1860
     cattaatgaa taaagacact tatgaacttc tgggttcgcc aaaattgtcg ccgtctcaac      1920
     aagtgctaac agcatataca ggacaaaata ttcccgtgct gggaacgtgt agcctgcccg      1980
     cctcttttca aggtgttacc aaaacgtgct tttgtagttc ttcaggccaa atctacacag      2040
     aacatttttg gactagatgc attcgacttg tttggcttat caattcaaag agatgtgctt      2100
     caaatttcgt cagtagtgcc tcaggacaaa atcaatgcat tgtgtgaaaa atatagtgac      2160
     ttgttttcgc cggaactagg ttgtgcaaaa gacttcgtgg cacatgtaac tttaaaagaa      2220
     tctgcagtac caaaatttcg taaagctaga ccagtgccta tcgcacttcg tgataaagtt      2280
     gctgaagaac ttaaacgttg gcaggatagt ggggtgattt ctcctgtttc tgcgagtcag      2340
     tgggcctcgc ctttagtgat tctaaccaag ccgacaggaa aacttcgtct ctgtgcggac      2400
     ttcaaatcaa cagtgaacag tcaaacaatt gtagacactt accccctgcc ccgacctgag      2460
     gaactgatgg acaaattagg acagtctcgc ttcttttcta agattgattt agcagaggca      2520
     tacttacaga ttccgctcga tgacgagtca aaaaagtttt tcgtcattaa tactcacatg      2580
     ggcctttttc aatttcaacg cctacccttt ggcagttctt ccgcccccgc tatttttcag      2640
     cgttttttgg aacagctgac agtttctgta ccgtgctgct cgaactattt agatgatatt      2700
     gtggtctcag ggcgcacagt tgaagaacat ttatcaaacc tggagtgcct tttcaaagtg      2760
     ttgactgcag caggtctacg ttgcaataaa gcaaagtgtt cgttttttca gactgaaata      2820
     gagtacctag gctatgtgat taatgcccaa ggaatccatc ccttacagtc acatcttcga      2880
     gcaatcaaag acttgcctcc tcctaagaat gtgcacgaat tgcaagcagt aatgggaaag      2940
     cttaactatt atttcagatt tattccgaat gcctctcaga ttgcagctcc actgcatcgc      3000
     ttacgtagga agaatgttcc ttttgtatgg tctaaagatt gccaggttgc ctttgacaaa      3060
     ttaaagtctg cactactcag tgatgcatgt ttgattccct ttgacccaca gaagcctgta      3120
     gtgctagcag tggatgcctc gtcttacggt ctgggcgcag tattgtcaca tcgtattgga      3180
     tctcacgatc gtcctattgc ctttgcatcc aagctactga cgccaacgca acagaattac      3240
     agtcagatag aaaaggaggc cttagcaatc atttacggcg tcacaaagtt tcatcattat      3300
     ctctatggca gaaaattcta tttgttgaca gaccacaagc ctctcacaaa gccaattccg      3360
     ccacgaacgg cacaaaagct tcagagatgg tccttgatac tgtctaatta tcagtatgag      3420
     attttgtacc gacctaccac taaacatgcc aacgcggaca cactttcccg acttccggtt      3480
     ggccaggatg tgtcgtttga ttcttcagaa atggcatgtt gtcagataga ctccagagat      3540
     gcttccgctg tcgcagactt ccctttgaac tctcgtcggg ttgcacagga aacagctgcg      3600
     gatgcggacc taagtgtggt agcacgtttt gttcgctcag ggtggcctgc cagagccaaa      3660
     gacattgagc ggcctctggt tcgacgttat tttgcacaac gtcatgcatt gtctttaagt      3720
     cagggtgttc tgttgttaca taccgacaac gaccaaacaa gagtgattgt tcctcgttcc      3780
     ctgcaacgag aagtgttacg cctcctgcat caaggacatt ggggtattgt taggacaaag      3840
     caactggcca gacgtcattg tacctgggtt ggtatggacg cccagataga gagcatgacg      3900
     tcacagtgta cagtttgtgc ggagcatcag gcggctcctc cgcaacgttt ctcagactgg      3960
     ccacgcccca agggaccatg gcaacgttta cacattgact ttgccggacc tttctggaat      4020
     acgcgctggt taattgttgt agacgctttc agcaagtttc cttttgtgat tgccatgaac      4080
     tcaacgacgg cgtctagtac aatcagtgcc ttaacatcag tgttttgcat cgaaggtttg      4140
     cctgaaacta tcgtcagtga caatggacct cagtttgtta gtgcggaatt tcaacagttt      4200
     tgtcgtgtga atggcattca gcatatcacc accgcacctt ttcaccctca gtccaatggt      4260
     gaagcagaac gtttcgttcg aacattcaag tctcacatgg aaaagatgaa aggtcagcac      4320
     tccaggcagc aagctcttca aattttcctg tctacgtatc ggtgcatgcc acgtgacggc      4380
     ccgtctcctg ccgagctgct acacggccgc cgtcaccgca ctctccttca cctgctgcag      4440
     cctcccacgc accgagtcgg ttcgtatggc gcttcgcgtt ttcaggtttc tacgccggtg      4500
     ctgtacaggg tgtttgctgg aaagaagaga tggttgccgg gcaccattca gcgcgtgctc      4560
     ggtcgcaata tgtatgttgt acgttcttcc acagggtcgg agctgcggcg ccacgcaaac      4620
     caattgcgcc tgcacaggcc gcgcgatcct gtctctggtt tcttgattcc agacccagtt      4680
     caccgccagg gagcacagcc acatcgctcg ccgccgggtc cagcgtcccc ggactacgag      4740
     atcgtcccca tggacgtcga cgcgcctccg ccgctgtcgc cgccgcagat gmcagcgtca      4800
     ccgagaggga ctccgggacc gtgcgtgccc ccgccgcctg ggccacgcac ctcagaagaa      4860
     gatgacctgc tccctctggg cggaggcgtg cgcccttccc ctggttttgg tgggtttccc      4920
     gggggatcgc aaggtggata ccggggcgcg gacggcgtct cgatcccagc ctcagctacg      4980
     acgcccgtcc caccagtaac gcccccgccc aggccctcct cccagtgccg tcgccgtggc      5040
     cctcagccct acgccacgac ggcgcggcgg tttggggggg gagggg                     5086
//
ID   Gypsy-21_LMi-LTR repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-458
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 458 BP; 102 A; 140 C; 106 G; 110 T; 0 other;
     tgtggtgtcg cacaagtctg aagtgcgcgc cacgtacttt cgccgcgcgc cgccatgcaa        60
     gcacggcgcg gcgttcttac gacgtcagcc acgagcgccc tctgctgcaa ccccgctcgt       120
     ggccaccact gaactgcatc ggtcacttgg caataggaca ggcactagaa gactcatcag       180
     taggcaggcc tctacctagt taaactatgt atctgcattc cactagtctg cgctctccaa       240
     gttaagtatt gtactatttc tacgaaatat atatcttgtt ctaatctagc ttagtgtttc       300
     tagtttctgc tgtcccactg gctggtcacc tcagactctg tacccgcaca cgcgtgcatc       360
     ctatttccct gtgtcggtct ctctctactc ggccaccgac acccaggaca accggcggca       420
     acgagacaca aaagtggcga cgaggatggg atacaaaa                               458
//
ID   Gypsy-21_MoPha-I repbase;    DNA;    INV; 5116 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5116
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1100-1100 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..1076
FT                 /product="Gypsy-21_MoPha-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MSSWIHNLSKEQALQLAQQHGIDTAAPLDVLRKKLRQ
FT                 FHAANPGALQIADIPEISIDLADDDMPNRPDHAPVANPARQEGAAHLETPR
FT                 VTPGPVERIKIINQIRKWGHHFDGKDPLTFLERTEELRLSYGLETEHLLLG
FT                 LPELLRGDALLWHRNNTGQWATWNEFCERLRTAFLPPGYQRRIKAEIRDRR
FT                 QRPGETFRVYSTALITLMRRAGGYSEREQVEQLYENMDPECQLYLQLTDQT
FT                 TLLELTTRVSQYEEINQRRKARSAESRPAQGTTATTTAYSREECCWRCKQR
FT                 GHTRLDCKRPPKKFCSRCGKDGVLTRDCHPPGNERRAGDVAAVTEPDNQ"
FT   CDS           953..4168
FT                 /product="Gypsy-21_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TSAKEVLLPVRKGRSLDQGLPPTGKRAEGRRRSGRHR
FT                 ARQPVTYTPRPHLTVRIAGRDLQALLDSGSEMSYISDETAKPLSRYRVRPG
FT                 PGEEHVHLADGTTVPITGVFHLSLRVQGRTYRHRFAVLPRLESPVLIGVDL
FT                 WGKLRLTLTPPPPGPGTRQTTRRLTAGALRQQTKDESAQLRDFLATELPRF
FT                 ETIRGPTSRVEHHIRLKPGAPIKQRYRPRNPAMQSVIDQEVDKMLAEGVIE
FT                 PSRSPWSSPVVLVKKKDGNHRFCIDFRRLNAVSEKDAYPLPHITATLDKLR
FT                 GAKYLSTLDLKSGYWQIPLTPASRPATAFTVPGRGLFQFKVMPFGLHSAPA
FT                 TFQRLLDTVLGPELEPNVLVYLDDIIVASATFEEHLQHLAEVFRRLRGAKL
FT                 RLNPDKCCFCRDRLRYLGHIVDRKGVHTDPEKVSAITGWPAPTTLRKVRQF
FT                 LGMASWYRRFIPEFSTLAAPLTALTKKNARWTWGTAEERAFRLLKEALTSA
FT                 PVLACPDFGRPFLLQTDASVQGLGAVLTQDHGQGEKVIAYASRTLNKAERN
FT                 YSATELECLAVVWGIKRMRDYLEGYRFTVLTDHQALKWLHQLEAPTGRLGR
FT                 WLFDLQQYDFEIQYRRGKQNQVADALSREPQVGAVTTTVDRWYERTRTNVQ
FT                 KHPDRFPDYDIRHGKLYRHLLHDLEFTETPASEQWKECLPRSQRAEVLQRL
FT                 HDEPSAGHLGVAKTIARIARLYYWPGMSREIARHVRRCPTCLAYKVPQRKP
FT                 AGHMHATPAXTPWQQVSVDLVGPLPRSSGGHTWLLTAQDRFSKWVELVPLR
FT                 RATAPALAREVTRRIIYRHGCPQQLVSDNGTQFTSRQFRRLLAEFGIEHRK
FT                 SPVYAPHCNPVERANRTIKTMIAQYVGNRHREWDQHLEALQFAINTAKHAT
FT                 TGYSPAFLVHGRELARPHPEDRRPTEGMAPEERRQILEEAYELARIHLAQA
FT                 FQKQERQYNLRRRGWRPQIGELVWKRDRTLSSKSDAISAKLAPKYDGPMEV
FT                 RRIISPVIVDLKDRLGKWHRRIHVQDLKPDPGDEEEGAEGDTDTEEEETPT
FT                 DESEGHPTQKCYPPC"
FT   CDS           4053..5099
FT                 /product="Gypsy-21_MoPha-I_3p"
FT                 /translation="NRIQGTRRREPRGIRTPRKKKHRPTSRRVTPPKSATR
FT                 PVNSEQTHPVNTEQTRDTRKPTLTLTPTPRRSHPMPTXYIRRDARLTRCLX
FT                 AAWQAEASXAXXXWRXHLQLERRREGRGDGVEEAAEGAYTATTTTQGAEGA
FT                 SSGDLHPAVRRRPAAEGELPRPAPPTTTQGTPDTEEAPRGVRRQGSPRAPF
FT                 HAPRPIAVRTATRAAAKARRGHRAAACATDRAATGATDRAAAGRATGTRAA
FT                 TGATDRAADRAPPXPPTAPPPAPXHHGYRTVRPTPPFPNGTSPAPPVGYTP
FT                 PVRVALPNGRVVAVPFHAAVVRRKYRVTDTGDRWIIRFDRRGQPRAIRPLP
FT                 PAPSPP"
XX
SQ   Sequence 5116 BP; 1166 A; 1730 C; 1453 G; 747 T; 20 other;
     tggcgcccga acagggactc gactagtggg aacccagctt gcgcccatac cgaatgagtt        60
     cgtggattca taacctctcc aaagagcagg ctttacagct cgcccagcaa cacgggatag       120
     acaccgccgc tccgctagac gtcctgcgga agaagctgcg acaattccac gccgccaacc       180
     ccggtgccct ccagatagct gacattccag agatctctat tgatctagcc gacgacgata       240
     tgccgaaccg accagaccac gcaccagtag ccaacccggc aagacaggag ggggcagctc       300
     atctggaaac cccaagggtg acacccgggc cagtagagcg aatcaaaatt attaaccaga       360
     tccggaagtg gggccatcac tttgatggga aggaccccct aacattcctg gaacggaccg       420
     aagaattacg gctcagctat ggactcgaga cggagcacct cctactgggg ctgccagaat       480
     tattgcgagg tgacgccctc ctatggcata gaaacaacac cgggcaatgg gctacgtgga       540
     acgaattctg tgagagactg cgcacggcct ttctgccacc cggataccag cgccgaataa       600
     aggcggagat ccgagaccgc cgtcaacgac cgggcgaaac cttccgcgtc tactccaccg       660
     cattaatcac actgatgcgt cgggccgggg ggtactccga gcgcgagcaa gtggaacaac       720
     tctatgagaa tatggacccc gagtgccaac tatacctcca gctcaccgat caaacgactc       780
     tactcgaact aaccactcgg gtctcccaat acgaggagat caatcagcgt cgaaaagcac       840
     gctccgccga atctagacct gcccagggga ccaccgccac cacaacggcg tacagccggg       900
     aagaatgttg ctggcgctgc aagcaacgcg gccacacgcg gctcgactgt aaacgtccgc       960
     caaagaagtt ctgctcccgg tgcggaaagg acggagtctt gaccagggat tgccacccac      1020
     cgggaaacga gcggagggcc ggcgacgtag cggccgtcac cgagcccgac aaccagtaac      1080
     atacactcct cgaccgcacc tcaccgtacg catcgccggt cgcgacctgc aggcactcct      1140
     ggactcaggc tcggagatgt cgtacataag cgacgaaaca gccaaaccgc tctctcgtta      1200
     ccgggttcgt cccggaccgg gagaagaaca tgtacacttg gccgatggga cgacggtacc      1260
     catcaccgga gttttccacc tgtcactccg cgtccagggg aggacctatc gacaccggtt      1320
     tgccgtctta ccacgcctgg aaagcccggt cttgattggg gtcgacctct ggggcaaact      1380
     acgactgacc cttacaccgc ccccgcccgg ccctgggacg agacaaacga ctaggagatt      1440
     gaccgctgga gctctccgcc agcagaccaa ggacgagtcg gcgcaacttc gcgacttcct      1500
     ggccacggag ctcccccgct tcgaaacgat acgtggacca acctctaggg tagagcacca      1560
     tatccggctc aagcccggag cccccatcaa acaacggtac cggccacgca atccggccat      1620
     gcagagcgtg atcgaccagg aggtagacaa gatgctggcg gaaggggtca ttgagccctc      1680
     acgcagcccc tggagctcgc ccgtggtgct cgtcaaaaag aaggacggaa accaccgatt      1740
     ttgtatcgac ttccgacggc ttaatgccgt atccgaaaaa gacgcctatc cgctccctca      1800
     catcaccgcc accctggata agctccgcgg agccaagtac ctctcgacgc tggatctgaa      1860
     gagcggatat tggcagatcc cgctcacccc ggcaagccgc ccggccactg cgttcacggt      1920
     acccgggagg ggattgttcc agtttaaggt catgccgttc gggctgcatt ccgcgcccgc      1980
     cacctttcag cggctgctag ataccgtgct agggccagag ctggagccta acgtcctggt      2040
     gtatctcgac gacatcatcg tcgccagtgc aacgttcgag gagcacctgc agcacctggc      2100
     cgaggtcttc cgccggcttc ggggggccaa gctgcggcta aaccccgaca agtgctgctt      2160
     ctgccgcgat cgcctacggt acctaggaca cattgtagac cgaaaggggg tgcacacaga      2220
     ccccgagaag gtaagcgcca tcaccggatg gccggcacca accaccctcc gcaaggtgcg      2280
     gcaattcctc gggatggcgt cctggtaccg gaggtttatc ccggagttct ccactttggc      2340
     agccccgctc acggcgctca ccaagaaaaa cgcacgctgg acatggggga cagcggagga      2400
     acgggcgttc aggctgctga aggaagccct gacttccgcc ccggtactag catgcccgga      2460
     tttcggccga cccttcctgc tacagaccga cgcaagcgtc cagggactgg gggccgtgct      2520
     aacccaggat cacggacaag gggagaaagt cattgcctac gccagccgga cgctcaacaa      2580
     ggccgagcgc aattatagtg cgacggaact cgagtgcctg gccgtggtct gggggatcaa      2640
     gcgtatgcgc gactacctgg agggttaccg attcaccgtc ctgaccgatc accaagccct      2700
     caagtggcta caccagctgg aagcacctac ggggcgactg ggccgctggc tctttgacct      2760
     gcagcagtat gactttgaga tccaatatcg ccgggggaag caaaaccagg tggcggacgc      2820
     cctctcccga gaaccgcagg taggagccgt cacaactacc gtcgaccgct ggtacgagcg      2880
     caccaggacc aacgttcaaa aacatccaga caggttcccg gactatgaca tacggcatgg      2940
     caagctatat cgacacctcc tccatgatct ggaattcact gagacgccgg ccagtgaaca      3000
     atggaaggaa tgtctaccgc gaagtcaacg agcggaagtg ctccaacgac tccacgacga      3060
     gccatccgcc ggacacctgg gcgtagcaaa aacgatcgcg cgcatagcac gcctatacta      3120
     ttggccggga atgtccagag agatcgcgcg acacgtacgc cgctgcccta cctgcctggc      3180
     ctataaagtg cctcaacgaa agccagccgg kcacatgcac gccacacccg cgwccacacc      3240
     gtggcaacag gtctccgtag acctggtcgg ccccctccct cgctccagtg ggggtcacac      3300
     ttggctacta accgcgcagg accggttcag caagtgggtt gagttggtgc ccctccgkcg      3360
     agcaacggct ccggccctgg cccgggaagt caccaggcgt atcatttacc gccatgggtg      3420
     cccccagcag ctcgtmtcgg acaacgggac ccagtttact tcgcggcagt tccgacggct      3480
     tttggcggag ttcggcatag agcaccgtaa aagcccmgta tacgcccctc actgcaaccc      3540
     ggtagagcgc gccaaccgta ccatcaaaac gatgatcgcg caatatgtgg ggaaccgcca      3600
     ccgcgaatgg gaccaacacc tggaagccct gcagttcgcg atcaacacgg caaagcatgc      3660
     gacaaccgga tactcccccg ccttcctggt tcatgggaga gaattggcgc ggccacaccc      3720
     ggaggatcgg cgacctacgg aagggatggc cccggaagaa cgcagacaaa tattagagga      3780
     ggcctatgaa cttgcccgaa tccacctggc acaggcattc cagaagcagg agcgtcaata      3840
     caacctacgc cggcgcggat ggcgtcctca aataggagag ctagtatgga aacgcgaccg      3900
     aacattatca agtaaaagcg acgccattag cgcaaaacta gccccgaaat acgacgggcc      3960
     aatggaggta cggcgcatca tctcaccggt aatcgtggac ctgaaagacc gcctggggaa      4020
     atggcaccgc cggattcacg tacaggatct aaaaccggat ccaggggacg aggaggaggg      4080
     agccgagggg gatacggaca ccgaggaaga agaaacaccg accgacgagt cggagggtca      4140
     ccccacccaa aagtgctacc cgccctgtta attccgaaca aacccacccg gttaataccg      4200
     aacaaacccg ggacacacgc aaacccacct taacgctcac ccccacgccg cgtcgctccc      4260
     accccatgcc gaccmmctat ataaggcgcg acgcgcgcct gaccagatgt ctcwttgcag      4320
     catggcaagc cgaagcgagc ktagcktgmg mtstttggag gcsacatctc cagctcgagc      4380
     ggcgacgaga gggacgaggg gacggcgtgg aagaggcggc cgaaggagcc tacaccgcca      4440
     ccaccaccac ccagggagcg gagggtgcct cgtcggggga cctccatcca gcggtccgac      4500
     gccgaccagc ggcggaaggc gagcttcctc gcccagctcc ccccaccacc acccagggga      4560
     cgccggacac ggaggaagcc ccccgagggg tacgccgcca aggctccccc cgcgccccct      4620
     tccacgcgcc ccgccccatt gccgtccgca ccgctacgcg cgccgccgcc aaggcccgtc      4680
     gcggccatcg cgccgcagca tgcgcgaccg accgcgccgc caccggcgcc accgatcgcg      4740
     ccgccgccgg tcgcgccacc ggcacccgcg ccgctaccgg cgccaccgac cgcgccgccg      4800
     atcgcgcgcc tccggmgcca cccaccgcgc cwccaccagc gccgscscac cacggctacc      4860
     gcacsgtccg gcccacgccg cccttcccga acggaaccag cccggcaccg ccggtggggt      4920
     acaccccccc ggtgcgcgtg gccttaccga acgggagggt ggtggcggtg ccgttccacg      4980
     ccgccgtggt gcgccgaaag taccgggtga ctgacaccgg cgatcgatgg ataatccgtt      5040
     tcgatcgccg gggtcagccc cgsgcaatcc ggccgttgcc acccgcgccc tcccccccct      5100
     gaaaaagggg gggtga                                                      5116
//
ID   Gypsy-21_MoPha-LTR repbase;    DNA;    INV; 846 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-846
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1185-1185 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 846 BP; 143 A; 288 C; 233 G; 182 T; 0 other;
     tgtgacgata cgtcactagt cccgggccga tcatccgccc caccacggga cttggcgtct        60
     acggacgccc ctcccgacag tctagtatcc cccgtcggga accgatccca ccacgctgct       120
     gggagcgcgt ggggatcgcc ccgacgggta taaaagccga gctcgatcgg gatcgagcac       180
     cagtcccgtc ctgtcgactg agtaggtctc cggaccactc tgacgcccgg ttctcgccgg       240
     cattcgacta tccttgcatc cgccgacgaa gcaggccacc tggccgtttc gctgcccggt       300
     tctcgccggc attcggctat cctcgtcgtg ccaacagagc aggccacctg gccgttctgc       360
     cgcctggttc tcgccggcat ttggccatcc ttgtatccgc cgacggagca ggccactagg       420
     ccgttctgcc gcccggttct tgccggcatt cggctctcct tgtatccgcc gacggagcag       480
     gccacctggc cgtttcgctg cccggttctt gccggcattc ggccatccct ggcgtccttc       540
     acagggccgg ttacctggcc gccctgcccg cccggttctt gccggcgaat acgcttcgcg       600
     accgcgttcg aaggtgctgc gcactagcgc gctcccgccc gaccgacgac attaggttaa       660
     gttgtatata cccgcatagg ataagtagca tataaggtag cttaaggatc atgtaagata       720
     ggctaagctt tataataaag atctattaat ttaacatcgg tgtgcgcaag ttggtttccc       780
     cccttctctc gaatcctggt acccggcgag cctgtccgag gcgttcggga aaggcgaacc       840
     gtcaca                                                                  846
//
ID   Gypsy-21_MSe-I repbase;    DNA;    INV; 5788 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5788
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 898-898 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5788 BP; 2210 A; 811 C; 1015 G; 1752 T; 0 other;
     tggcgaccct tgccatattt gggacgcgtc gcgccggtac tgtctcagtg taatattacg        60
     tctctacagt aaataaattg aactttgatc caagatgact ccttcaaaac acggcgaagt       120
     gttcacgcaa gttggtaaaa tcaaaggcta aaataaaaaa tacctattta aaatccgaag       180
     atgtgtcaat caaaagtgga caaggaaacg gttttcttaa atcagaatgc tgctggatca       240
     aataatgcca aaattgaaga attgaagctg catatgtcta gtattagtat tttgctcgtg       300
     gttatatgta tcctactggg tctcggagct atctatttaa tgtggaagca atataagaaa       360
     tgtcaccatg cctggatcaa tgaccagatt acgcaaaata attttcgtcg atcatttagc       420
     cgcgctagag ccaatcggga agaagacaac ggcgtgcgtg atccaatgaa atagcagaag       480
     agtcttttgt gtgcgtgaat gtgtttgtga tacctatcaa ataaagtgaa atgtgaaaat       540
     caatagtgca gtaactcaaa tattttatac atattattga cggaaacaaa tgtaatttaa       600
     ggacattaga attatacgta agttataatt tactaaattg aataatgtaa cataagactc       660
     acggccccta ctaaggtaac aaacaatcag aatttggttt gtataatatc atatcaccat       720
     atcattttat gaaaggttat ggaagatgaa ttacttgaga gtttagatga gcttaagtta       780
     ataagaaaat atttaattaa gaaaggaaaa tcaagattta aaggtaatgt tattaagaat       840
     aaattatcag aaacggaaag tttatataaa aagtgtacgg aattaattca attattattg       900
     tcgaagaaag gaataaaaac tgaattttgt aaatcgttag ctttattaga aagtgagata       960
     aaattgaact atcaaaaaat tgttaattta tgtgcggaag gcaaatcaga tagcggtagt      1020
     gatagcgaat tttgtaaaac gagtttatat caagaaacaa ttatggattt tgattttaag      1080
     accgcatgta acttgattcc gatcatgaac ggtaaggaaa ataacaccaa aaatattata      1140
     gacactgtag aattgtatgc agaaacgttg tcagaaccag ggagaaagat gctcataaaa      1200
     tttgttttaa aaagtagact aactgaaaat gcgaaactgc gtatgtccaa tgactattca      1260
     tctacggatg agcttgtcaa agatttacgt aatattctgt taagtaaaaa agtcatttac      1320
     tgcaatacaa tcacgactgc aaaacgcaaa acaaggctgg cgttcaattg accagtatgg      1380
     tacagagtta gaaaaattat tcactaattt gacaatatcg caggctgatg gtaattctca      1440
     aaattatact gttttaaaac cgattaatga aaaattggct attaaacgat ttgcagatgg      1500
     attaaatgat tcccggctta gcacaattat cgcagcacgt aactacaaca gtttgacaga      1560
     tgcaattcag gctgcaaaag acgaggagtt gacggcggca tctacttcaa acggtgaaaa      1620
     tataatgcaa tttcagcgtc gcagtggagg taagtttcaa cctaatattt acccttatca      1680
     tcaaccatca tacaatcaac agtctcgcgg acatcggaaa tatcctcatc acccaacttc      1740
     aaataattac agaagaggta attataataa ttatacaaat aattttggta gaggtagagg      1800
     aaatttcaac agtaatcgtg gtagatcatt ctataattct cgcggtaact ctcggggttc      1860
     atataataaa atagatcgag agcgaactaa ccaaccaaac gagaatcgat cgagatataa      1920
     aactcatggt agtggtaatc agcatcgcat gttttatacc gaacagatag atcagaatga      1980
     acctttgaaa tccgataacg atgaaataaa agttttttcg atcttaaacg taatatttta      2040
     gcattaactg gtaacgcgaa atttttaact ttatatgttg gcaaaaggaa atatttttgg      2100
     ttagtagaca ccggagcatc aataagtgtg ataaagagag atgcattacc tagcaacagt      2160
     atcataaata aagatgagac aaccataaac ggtattgggg gtcaaattca atcgattggg      2220
     tttagtcatc ttagcttgaa tcatcatagt gacaaacact gtgtcgaatt tgataccaag      2280
     ctttatattt tcaataacat accattaaag gcggatggaa tattgggttt agattttctg      2340
     tgtcgttatg cggctagtat caacttaaag aataacattg ttactttgtt taaatacgga      2400
     atagaatata tgttaaaact tcatgacgaa attgattatt ctaatgaaac attacgtatt      2460
     ccagcgcgca gtgaatccat tcactatttg ttttcagata ctgattttaa agatgattgt      2520
     attattaata ataaagtact ggcagaaaat gtttttcttg cggggtgtat agctagaata      2580
     aaaaataata ggattccagt aaaaattttg aataccaatg aacatgatgt tataatacca      2640
     atgtttcaac cggaaataca ttcacttcaa gattatgatt tatgcaattt taaatgtata      2700
     gataataact tagagcgagt aacaaagtta ttagatattt tgaaattaga tcatcttaat      2760
     gtagaggaac gagaatccat tcaacaatta tgtgctaaat atccggatgt tttcttttta      2820
     cccggagaca aattaacaac tacgaatatt tatgaacaat caataactat caaaccaaat      2880
     actggtcctg tttatgttaa gcagtatcga ttgcctcatt ctctaaaaga tgaaataaat      2940
     agacaaatac aagatatgat taataatgac ataatagagg aagcaagaag cgaatggtct      3000
     agtcctatat tgttggttcc caagaaaact gagggaaata aaaaaatggc ggctagtagt      3060
     agactaccga aaacttaatg attgcattat agacgataaa ttccctttac caaatattaa      3120
     tgaaatttta gattcacttt gtggctctat ctatttctca catttagatc ttgatcaagg      3180
     ctattatcaa gtagctttag ataaaaagag tagagaatac actgcgttca ctacgaacac      3240
     tgggcaatac catatgaaga gattacctat gggacttaaa acaagtccaa gcgcttttag      3300
     tagagtcatg tcagtagcta tgtctggatt aacatatgac agatgtttta tatatttaga      3360
     tgatttgatt gtttttggaa gaaatttaga taaccataac aaaaatttaa tggatgtttt      3420
     acaaagactg agaaaagtta atttgaaatt gaatccacaa aaatgtatat ttttgaaaaa      3480
     agaaatcctt tacttaggac atttagtaac agaaaatggt gttttgcccg acccagcaaa      3540
     agttgaaata ttacagaaat atccagtacc gactagtaca gatgaagtta aaagatttgt      3600
     agcgttctgt aattactaca gaaagtttat taaaaatttt gcaagtataa cttatccttt      3660
     aaataaatta actagaaaat atgaaccgtt tatatggact gacaaatgtc aaagtgcatt      3720
     tgaaaccttg aaacatgctt taacaactcc accagtctta gaatttccag acttttcgga      3780
     gaataatgaa tttattattc aaacagatgc atcaggtacg gccattggag cagttctgag      3840
     caataaaaat atgaaaccag tagcatatgc aagtagacca cttaataaat ctgaactgaa      3900
     ctatccaact atccagaaag aattagtggc tattgtatgg gctgtcaaat atttcaggcc      3960
     ttatgtgtat ggcaaatcat tcacaataat gaccgaccac aggcctttaa tatatttatt      4020
     ttcaatgaaa gatccctcta gtagactttt aaaatttaga ttgacattag aagaatataa      4080
     ttttaaaatt gtgtatgtga aaggaaaaga aaatagtgta gcagacgcat tatccagaat      4140
     tgatattact gtagatactt taaaggaaat gaataaagaa ataatgttag ttacgactag      4200
     agcacagaaa aaacaactag ataaaaattt aaatacacgt atttttagta attcggataa      4260
     acagtggcct gatcaaccac gtgtagttga aatactaaaa ataccaaatg attctgtaga      4320
     aatgactttt ataggtaatg aagaattaaa tcaattaaaa atacagaata acgtagatga      4380
     agaaaaggaa tgttttgttt atagtcatca taggaaaata ttatatatta accttaactt      4440
     tagggcacaa ttttcgcgag ccgaatttgt aactaagtta gcaaagtttt gtagacatat      4500
     aaatataaat gaactatgca tagtaaaaac taaaaattgt gagagtttta ttaaagatat      4560
     attaagagaa ataaaagata acaaggattg gaccggtcca cgaatttatg tattaagagg      4620
     agttagaaga ataaatgatg aagcagaaaa gaagtatatt ttacatgatt ttcatctgtt      4680
     acccactgca ggtcatgcag gtgtacgcag gatgactaat aatattaaaa gaaaatttta      4740
     ctggccaggc ttagataaag atgttaaaga ctttgtaagt aaatgcgtta aatgtcaaaa      4800
     atgaagcatt gtagatatgt caaggcgccc atggagataa ctacaacagc ttcttatgct      4860
     tttgaaaaga tctttcttga catcgtaggt cctttagaaa gagatgtaga cgaaaatatt      4920
     tatattttaa cactacaatg tgagcttact aaatttgtag aagcttatcc attaaaaaat      4980
     aaggatacgg taagtgtagc acatgcttta gttcataatt ttattttaag atttgggata      5040
     ccaaacgcga tagcgactga ccgtggtaca gagttcgtct cttcagtaat ggaccaggta      5100
     tgtaaattat taggaataaa caaaattaca tccacagcat atcaccatca atctatcggt      5160
     gcgcttgaaa attcacataa tagtttgaat acatttttgc gcatacagtg tgatggacag      5220
     aaagacacat ggagtcagtg gatacaatac tggtgttata gttttaacaa tactgttcat      5280
     acggaaacaa agtacacacc ctttgaattg gtatttggca gagctagtgt aataccatgt      5340
     agagtaagtc atcatataga accgctatat aatccagata gttatccttt agaccttaag      5400
     tataggttac aagtagcaca tcaagatgct cgtaataatt taattttaag taaacaaatg      5460
     cgtaaacgtt catatgataa atatcttaat gatgtaaaat acaatagtgg tcaattaata      5520
     ttggttaaaa atgaaacagc caataaattt gaaagtcaat ggaaaggccc atttgtcgta      5580
     ttaaaagatt taggtgttaa tgttaaaatt ataaaaaata ataaatgtga tgtaattcat      5640
     aaaaatagaa caaaaccgtt tataacttaa attgtattaa ttatattata acgattaaat      5700
     ttaatatagc atataaatat ataaaaaaaa aaaaaaaaaa aaaaaaaatc atataatatt      5760
     tttttttttt tttcacctgc ccctgagg                                         5788
//
ID   Gypsy-21_MSe-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-128
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 947-947 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 128 BP; 51 A; 17 C; 18 G; 42 T; 0 other;
     tgaggtgtag tagtattaat attattatac atatataaaa tgtatggtat ataaatataa        60
     acacattgta atccaaggag agtaataaat gatatttcaa ccagaacagt tgtcttcatc       120
     tccccaca                                                                128
//
ID   Gypsy-21_OrIn-I repbase;    DNA;    INV; 4015 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4015
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1562-1562 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..858
FT                 /product="Gypsy-21_OrIn-I_1p"
FT                 /translation="MVNEDQETTHQEGQPTPQGTESIGPAPRLPTFWKAEP
FT                 ALWFIQIEAVFSTSRVNSSAKKYQLVVANLELEQLRQVADILREPGATPYE
FT                 ALKARLLSTFEESQSSKIKRLLEQTTLGDEKPSHFLRSMRQKAGTLLSDDM
FT                 LKSLWLRALPSRTQEILTTVDTDDLNKLALTADKIAEVDKPSVFSVSPSDA
FT                 GAKNDQIAELSRQVSELAKQVQKLQIQKRSRSRTRSKSPAKRDNSTNEVGK
FT                 CWFHRRFGDQATKCTQPCSETLTKN"
FT   CDS           771..3977
FT                 /product="Gypsy-21_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RSRKMLVSQTLRRSGYKMYSTLLRNSNKKLTSAAAQR
FT                 AESAAAALDSISARLFVTDRKSHRTFLIDTGAAVSVLPPLSNSRPLQDNAL
FT                 YAANGTLISTYGYKSLNVDLGLRRPLNWRFVIADVKKPIIGADFLNRHGLI
FT                 VDIQGRRIIDRETKLSTSGRTGLASLESLSTIPTGKYADLIGKYKDITQPA
FT                 FAKDVIKHNVQHYIETTGRPVAEKARRLTAQRYKAAKEEFYRMVEEGICKP
FT                 SKSQWASPLHIVDKPDGTIRPCGDFRRLNSKTTPDKYSIPHISDLNIGLTG
FT                 KTIFSTLDLERAYFQIPIAEEDIPKTAVITPFGLFEFTRMCFGLRNAAQTF
FT                 QRFIDSIFRDLPFVFAYIDDILVSSSSEEEHKEHLEEVFKRLSTHGLTLKI
FT                 PKCVFGKNTVNFLGYNIDANGITPIETKVDAINSYPKPETIKDLRRFLAMV
FT                 NFYRKCLPHAAERQRPLNEYLKGSKKNDKRKIDWNPESTAAFDQTKEDLRN
FT                 ATRLGHPNPDAIISLDCDASDKGIGAALQQLDGDTWTPLGFFSKALSPAQQ
FT                 KYSTYDRELLAMYQAVKHFQPLLEGRKFMIRTDHRPLTFAFDKPSTSSSPI
FT                 RTRYLSFIAQFTSDIRHINGAENPVADALSRVDEVDLLPDNWEALEKAQLL
FT                 EEQNGTLPTGSFKLEKISIPGSLVSILCETTLDKPRPYLPFHFRRAAFHNI
FT                 HTPSHPGVRTSRKMVSQRYFWPGMNVDTGKWAKSCIGCQKSKVSRHTISPL
FT                 GVFQPAGRFEHVHIDLVGPLPPSQGRQYCLTMIDRYTRWPEAVPIEDITAE
FT                 TVAQAFVTHWISRFGTPHRLTTDQGRQFESKLFQQLSALLGIEHIRTTPYH
FT                 PQANGKIERFHRTMKAALMARDAHSNWTRHLPIVLLGLRSTLDDEHHCPAQ
FT                 MVYGTTLRLPGDLIIPSTSTPDKEDFVQHLQSSMRSLRPVTPRSADTKTFV
FT                 PKDLRTCSHVFVRVEGLKRSLTPPYEGPFEVVARTEKTIRVKILGKESTIS
FT                 IDRVKPAFLGDDSAPPTNTTPGSSPHMTTPVRLPTPTAAPSNTAPPVITRS
FT                 GRSVKKKVHFDA"
XX
SQ   Sequence 4015 BP; 1169 A; 1145 C; 854 G; 847 T; 0 other;
     ctggtgacct atcgacgttt aacagaacta agactgactt gataactctt cgccggcaac        60
     atggtcaacg aggatcaaga gactactcat caagagggtc agcccactcc gcaaggaacg       120
     gagtccatcg gccctgcacc acgcctgcct acattttgga aagccgaacc agctctctgg       180
     tttatacaaa ttgaagcggt tttcagcact tcacgggtaa attcgagcgc caaaaaatat       240
     caactcgtcg tggccaactt ggaactggaa cagttacgac aggtagctga tatacttcgg       300
     gaaccgggag ctactccgta cgaagcgtta aaagcccgat tattgtcgac attcgaggaa       360
     agtcaaagtt ccaaaataaa acgtttactg gaacagacaa cgctcggaga tgaaaagccg       420
     tcacatttcc tccgctccat gcgacaaaaa gccgggacac tactctctga cgacatgtta       480
     aaaagcctct ggctgcgcgc cctaccgtcc agaactcaag aaattttaac tacggtagac       540
     actgacgact taaataaatt ggccctaact gcagacaaga tcgcagaggt cgacaaacca       600
     tcagtcttct cagtttctcc gtccgacgcc ggagcgaaaa acgaccaaat agccgaatta       660
     tcgagacaag tctcggaact cgctaaacaa gtccagaaac tgcagatcca gaaaaggtct       720
     agaagcagaa cccgttcgaa atctccagcg aagcgagaca attcgactaa cgaagtagga       780
     aaatgctggt ttcacagacg cttcggagat caggctacaa aatgtactca accctgctcc       840
     gaaactctaa caaaaaacta acctcggcgg cagctcaacg ggctgagtct gccgcagcag       900
     ctctcgactc gatctccgcc cgcctttttg taacagaccg aaaatcacat aggacttttt       960
     taatagacac gggtgccgcg gtgtcggtcc taccgcctct ttcaaatagt cgacctctac      1020
     aagataatgc tctctacgcc gcaaatggta cgttgatttc cacatacggg tacaaatcat      1080
     tgaatgtgga cctcggacta cgtaggccat taaactggag attcgtaata gccgatgtca      1140
     agaaaccgat cattggggct gattttttaa atcgccatgg tctcatcgta gacattcaag      1200
     gccgacgaat catcgatcga gaaaccaagc ttagcacctc tggacgcacc ggtctagctt      1260
     cactcgaatc tctctcgact ataccgaccg gaaaatacgc cgacctcata gggaaataca      1320
     aggacataac acaaccggct ttcgcaaagg acgttatcaa acataacgtg caacattaca      1380
     tcgagacaac cgggcgccct gtcgcagaaa aagcacgccg tctaacggcg cagaggtata      1440
     aagccgcaaa agaggaattc taccgaatgg tggaagaagg catctgtaag ccttccaaaa      1500
     gccaatgggc tagtccatta cacatcgttg ataaacccga tggcaccatt cgaccctgcg      1560
     gggactttcg ccgtctcaac tcgaagacta ccccagacaa atacagtatt cctcacatca      1620
     gcgatctgaa tattggtctt acaggcaaga caatattttc tactctcgat ttggaacgcg      1680
     cctactttca aatcccgata gctgaagaag acatacccaa gacagccgtt ataactccat      1740
     ttggactctt cgaatttaca aggatgtgtt tcggactgag gaacgccgcg cagactttcc      1800
     aaaggtttat agactctatt tttcgcgacc tccctttcgt gttcgcatat atcgacgaca      1860
     ttctcgtctc ctcgtcttcc gaggaagaac acaaggaaca cctcgaagaa gtatttaaac      1920
     gtctttcaac acatggatta actctcaaaa ttccaaaatg tgtcttcgga aaaaacaccg      1980
     tcaatttcct cggttacaac atcgatgcaa acggaatcac accgatcgaa actaaagtcg      2040
     acgccatcaa ctcttacccg aagcccgaga ccatcaagga cttaaggcga ttcttggcta      2100
     tggtcaattt ttaccgaaaa tgtcttcctc acgcggctga aaggcaacgt ccactcaacg      2160
     aatatttaaa aggcagtaag aaaaatgaca aacgcaaaat cgattggaac ccggaatcaa      2220
     cggcggcttt tgatcaaact aaagaagact taaggaatgc cacgcgattg ggacacccaa      2280
     accctgatgc tatcatctca ctcgactgcg acgcatcaga caagggcatc ggagcagcac      2340
     ttcaacaact ggatggagac acctggacac ccctcggatt tttttcaaaa gcactgtctc      2400
     cagcccagca aaaatactcc acatacgacc gcgaacttct cgctatgtac caggcagtca      2460
     aacacttcca accacttctc gaaggacgga agttcatgat tcgcacagac catcgccctc      2520
     tcacgttcgc attcgacaaa ccatcaactt caagctcacc tattcgaact cgttacctca      2580
     gcttcatagc gcaattcaca tcggacatcc gacatataaa tggcgctgaa aatccggtag      2640
     cggacgctct ctcccgagtg gacgaggtag atctattgcc tgacaattgg gaagcgctcg      2700
     aaaaagctca actacttgaa gaacaaaacg gcactcttcc gacgggttca tttaagctcg      2760
     agaaaattag cattccaggt tcactcgttt caatcctttg cgagactaca ctggacaaac      2820
     ctcgaccgta cctcccattt catttccgaa gagccgcctt tcacaacatc catacgccaa      2880
     gtcaccctgg agttcgaact tctcgaaaaa tggtctcgca gcgatacttt tggccgggca      2940
     tgaacgtgga caccggaaaa tgggccaagt catgcatcgg ctgccaaaaa tcaaaagttt      3000
     ctcgccacac catctcgcct ctcggagtgt tccaaccagc tggaaggttc gagcacgtac      3060
     acatcgacct cgtcggacct cttccaccct cccaaggacg acagtactgc ctgaccatga      3120
     tcgatcgata cacgcgatgg cctgaagcgg taccaattga ggacataaca gccgaaaccg      3180
     tcgcgcaagc ttttgtcacg cactggatct ctcggttcgg aaccccgcac cgtcttacga      3240
     cggaccaggg tcgacagttc gaatcaaaac tgttccagca gctatccgcg ctcctcggga      3300
     tcgaacacat cagaacaacg ccgtaccatc ctcaagcgaa cggaaagata gaacgtttcc      3360
     atcgtacgat gaaggcagca ctcatggcgc gagacgccca ctctaattgg acaagacacc      3420
     tacctatcgt ccttctcggc ctccgctcaa cgcttgacga cgaacaccac tgcccggccc      3480
     aaatggtcta tgggactacg cttcgccttc caggcgatct catcattcct tcaacctcta      3540
     cccctgacaa ggaagacttt gtgcaacact tgcagtccag catgcgatct ctccgcccgg      3600
     tcactcccag aagtgcggac acaaaaacct tcgtaccaaa ggacctacgg acctgcagcc      3660
     acgtttttgt tagggttgaa gggctgaaac gttcacttac gccgccctat gaaggaccat      3720
     tcgaagttgt agcacgaacg gaaaaaacca ttcgcgtcaa gatcctcggg aaagaatcga      3780
     caatttcaat cgacagagtg aaacccgcct tcctcggaga tgacagcgca cctccgacca      3840
     acacgactcc aggaagttcg ccacacatga cgacaccggt acgtcttccg acccctacgg      3900
     ctgccccaag caacacagcc ccgccggtca tcacacggtc tggaaggagc gttaagaaga      3960
     aggtccactt tgacgcatga tggaagcacc gcggtgactc ttttgggggg agctc           4015
//
ID   Gypsy-21_OrIn-LTR repbase;    DNA;    INV; 727 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-727
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1580-1580 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 727 BP; 241 A; 185 C; 132 G; 169 T; 0 other;
     tgtggcggct acgccatcta ccaccaccct tcaaaacaaa agagtcacac ctcgccacca        60
     acagagcgcg tcactagtca atacaattct gttggccctg aaaagggccg ttgaatataa       120
     aaatgtaata ctttatttat tgtaaaattc ttgtaaattc aatgttttta atattatttt       180
     gtaggcccca aataaggccg cttaaacaaa tgaaaaattg tataaaaata aataaagaaa       240
     tcggccgaaa ttcccctagc aaatcccggc ctcctgattg gctgacgagt ttcaaccaat       300
     gaggggtcga ggaagcccta tataaaccgg gggatcgccg aagtttaatc agtctttatc       360
     cagacttcaa aggaatcact attcacaaga tatcctcagc tccatagagg ccactccagt       420
     cgacccttta aacgccaaca actctggacc cacggaccat ccaaaaagcc gccaggagga       480
     tccaaaaaat cgaacaagtt tttctgtcgt ttcttaataa aaaaacgact cgattccccg       540
     gaccctttct gtaccaccta ccgtcaggta ggtcaataca catactccct gcacaaggag       600
     agtgtagagg tacaacgccc acctccctta gtcataaggg ctgaaacaca tgcccacaaa       660
     aagggagtgt taacggtggg gtcccttcaa aaaatacaaa attaacgtta gggcattaac       720
     ccctaca                                                                 727
//
ID   Gypsy-21_PBa-I repbase;    DNA;    INV; 4388 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4388
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 713-713 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~86% identical to the consensus. 5'-end is not
CC   determined.
XX
SQ   Sequence 4388 BP; 1107 A; 1367 C; 1162 G; 734 T; 18 other;
     atctcctgac tatgcggcgg atcgggggat acacagagca agaaccagtt atacgaaaac        60
     atggacccgg acttgcaacw ttgcattgmt cctaatgatg cctccacggt agaagagccg       120
     agtattcgag cagctcgcat agaggccatc cagagtcgga aacaggackg tcagmtgacg       180
     gcgkcacgat ccgccaagac cgccgtggta kccgccgcct acaatcgaga agactgttgc       240
     tggagatgta aacaacgggg gcatagagga gagamtgtaa gcgmcccccc aagaagtttt       300
     gctcccgtgc gggaagaacg gctccttacw cgggactgtc agggaaacgg accaagggtc       360
     sgagaagccg cggtcatcga ccgacccgat tccgcctaat mtatatccgc acgtccagat       420
     tcgggtccag aamaaaaact gtgggmtctc atcgactcgg gctcggagat ctcttttctg       480
     aatgccaaaa cggctcgact actggatcct gatcgactcc gacaggagcc agctacaagc       540
     cawgtcaatc tagccaatag taccagggtc gcaattaacg aaactctcga aatgtccttc       600
     actctaggcg acaagacgta ccaacatcgc tttctcatac tgccgcaaat gggcagccaa       660
     gcattgtttg gcaccgatct gtcgggtcac ctcaatatct cgttgcgacc accgcctgtg       720
     ctcaaaaatc ttcaaactac cgacgacccg aactcgccgg gatcacctcg tgcacaccgg       780
     gagaggcgac cgtctccaag atttcttcgc cgcagaacta ccaaaatttg actcggtgac       840
     tgggccgacc gaccgcacga cacacacaat cagactcaag tcaggcccct ctatcaagca       900
     gcgataccgg ccatggaatc cagccatgca aacgataatt aacgaagaag tcgacaagat       960
     gatccaggag aggataatcg agccttccaa tagtgcatgg agctcaccaa tagtgatggt      1020
     agtgcgaaag aaggatgggg gacggcgctt ttgcatcata gactttcgca aattaaatgc      1080
     ggccttcaaa aaagatgcat acctcttgcc gcacatcacg ggacgctcga caaactccgt      1140
     ggagcccgat acctctccac attagatcta aagagcggat actggcaggt atcactagca      1200
     cccgaaagtc ggcccgccat ggcttttacc gtatcaggag agggctcttc cagtttcgag      1260
     tgatgccgtt cggcttacac tctgccccag ccacttttca aaggctgctg gatagtgtct      1320
     tgggccggat ctagaatcga acgtcctagt atacctggac gacataatca tcgctagtgg      1380
     atcatttgag gaacatttga agcatttgac cgaggtcttc cgccgacttc gtaaggctag      1440
     gcttcggctg aatcctgaca agtgtcgatt ctgtcgggac agcctgcgat acctgggaca      1500
     catcattgat cggcaaggca ccgacccgga waaggtaaag gccataaccg actggccaac      1560
     acctaccacg atacgcaagg ttcggcaatt cctgggacta gcctcctagt accgaaggtt      1620
     cattgccaac ttctccactc tggccgcccc cctcactcgc ctcatgaaga aaaacacgaa      1680
     gtggacgtgg ggagaacccg aagaccaggc gttccggcaa ttaaaagagg ccctcaccac      1740
     aacgcccgtt ctagcctgtc cagatttctc ccggttgtcc tgcagacgga tgctagttct      1800
     atggcctcgg agcggtgctg acgcaacaat tgaacaacga agagcgagtt atcgcatatg      1860
     ctagtcgcac cctcaaccaa gcggagcgca acagcgccac cgaactgaat gcctcgccgt      1920
     ggtatggggg atactgacgg atgcgcgact atctcgaggg ataccgattt accgtgatta      1980
     ccgaccacca atcgcttaag tggcttcatc aactcgaagc cccgtccgga cggctgggaa      2040
     gatggctctt tgaattccag caatacgact ttgagatccg ataccgcaag gggactctca      2100
     accaggtagc ggatgctctc tcccgcgagc cacaggtctg taccgtaagc cggaaccccc      2160
     gctgtccatg gtaccaaaga atcgccgccg gaataaaggc gcagcccacc gagtggcctg      2220
     actatcaaat ccgcgcaggc cgcctctacc gacacattct ccacgaccta gactttcgcg      2280
     aaacaccagc ggagaaacaa tggaaatagt gtgtgccccg ggaagaccga cccgacgtaa      2340
     tgcgacggat gcatgatgac ccggcctccg gacatttggg gatagcgaaa accatttccc      2400
     gcgtcgctcg gctctattac tggccgggca tgttccgaga ggtcgcgcaa tatgtacgac      2460
     gatgcgccaa ttgcctggca cacaaaccgg tgcagcaacc gcctgcaggc cgcctccaca      2520
     ccgctccgat caaggtaccg tggcagcaag tcgccgtaga cctggtggga ccgctgtcca      2580
     acagtgcgag gacatacctg gctactgacc gcccaagatc acttcagcaa ataggtggaa      2640
     atgatgcccc tccgaaaggc cacggcagca aatctcgcac gggaaatcat caatcgtgtc      2700
     atataccgac acgggtgccc acaggaatta gtatcggaca acggcatgca atttacctcc      2760
     cgccaattcc acgttgcttt agaagcattc gacatccacc accggaccta caccagtata      2820
     cacgccatag tgcaacccag tggaacgggc caacaggacc ataaaaacca tgattagcca      2880
     atatgtggaa agacggcacc agagatggga cgaacatatt gcggcactcc agttcgccgt      2940
     aaacactgct cagcacgagg ctacgggata cacgcccgcc tacctcaatc acggaggcga      3000
     actcgcgcgg ccccatccga acgatcggaa gacatccgtc accgccactc tgcctgaaat      3060
     caaccaaaag catctagaag aggtgttcga actagccgga tacacctggc acgggcattt      3120
     catcgccaaa agcgatatta taatctacga agacgggaat ggcgaccgga tgggagacag      3180
     gtggaagcgg gaacactccc tgtctcgaaa gagtgacgcc ttcaacgcca aattagctcc      3240
     acgatacgcc ggcccgatgg aagtccgccg catcctgtcc ccggttatcg tagacttgcg      3300
     cgatacccgg agaaagtgac acaagcacgt gcacattcag gaccttaaac ctgcatcacc      3360
     agacccggac gacatctctg aaaattcaaa ggagagagac ccggaatcca gtgagacggc      3420
     cctgagcccg ccggggccct cgggcaccct acgcactacg gctctgacac cccgttccag      3480
     acggcgccgc tcggggcgct gccgagcaga aggcgcatcc cgcaggacgg agccacacca      3540
     cccgcctkat ctgcctacmc cgccggccca cgagctaatc tatataagga gctgcgccgg      3600
     tcagcgaccc gtcaatcgac acagcgagcc atagcgagcg ccatgtcgaa cgaggagcga      3660
     tagcgagcaa cgacaggcga gcgaaaacgc gtgataggga gctgttcgga gagctgtccg      3720
     acagctcgga ggagggaccg cgaccggtca cwgcccggct accaccgaca ccgccagtgt      3780
     ctccggtcga accgagcggc cgacggggcg tccacctgcc ctggccaggg atcagcatcc      3840
     aacggtcgga cactgaccgc caacgaaagg cggtctggct ggcgtcgcca ccagcgacgt      3900
     cacgcaaatg gcggcgcacg gttggggaga ttccccccga ccaacgaaga gagccaaggc      3960
     ctcccagccg gccgaaggaa gccgccagag cgctgccacg ggcgccggaa cagaggcgac      4020
     caccatcccg gccccggaga ccgcgcgaga tcgcgtcccg cgattgcagc cgaccggcga      4080
     gcgacgatcc tggcgccagc cgaaggccca tctcggacca cgccgaccag tcccgagacc      4140
     acatcaccga tcccgaccgc cgccgccgcc acgcaaaccg cccgcaccac cagcgccacc      4200
     acctatcgtg gtccgcctcg atgatggcac gatcgtcgaa gtgctattcc tgacggccac      4260
     gataggcagg aaatactggg cgaacagccc gaccggccga tggatcatcc gttcgatctc      4320
     cggggcaggc cacgagccat ccgccgacta ggcgcggcca ctccaccctc cgcgccgtaa      4380
     gggggtga                                                               4388
//
ID   Gypsy-21_PBa-LTR repbase;    DNA;    INV; 939 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-939
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 714-714 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 939 BP; 184 A; 299 C; 216 G; 240 T; 0 other;
     tgtaacggca cgcatgccgt cactagttta gggccgacca ccagcccggc gctctttgag        60
     cgccactacc cgtgtaatcc ccaccgtggg gaactcctcc caccgagaaa atcgtagagg       120
     taggggcagc cggagcggta tataagccgg ctcgccggac gagtcggcac cagttcccgt       180
     ctcgagcgag accactcagg gtgctcccga gcctcgatcg agatttcctt gccttcctga       240
     cttcctgacg agaccacgga gaagggtgct acctctccga agccagggtg ctaccggcgt       300
     tggtcttccc gacttcctga cgctaccgcg gagaagggtg ctacctctcc gaagccaggg       360
     gctcccggcg tcggtagcgt gcttgcgcac gcgcgcgcga ctgccctcgc ttgggcttgt       420
     atatattgta tatagttagc ttgtaagtct cccgcgttct ctctcttgcg ccgtgtaata       480
     gttagcttgt aagtctatcg ctaccgctac tccgcttctg cgatcttatc tctgtaaata       540
     ccgctactcc gcttctgcta gctctgtatc ttcgctattc tgtataccgc tactccgctt       600
     ctgcgagctc tgtatctctc gctatcgcta ctccgcttct gcaatctctg tagataccgc       660
     tactccgctt tgcgagcttt gtatttccgc ctaccattgt aaaatattat cgtgcggaac       720
     attacactgc gcctgaatac acacaccgca cacacacaca cacacacaca cacacacgca       780
     cgcacgcaca cacctatcct ctgtatatat gattagtctc tcaataaatc ttatattttg       840
     gttaattgct gtgttgttcg taagctcgga tctccccctt ctcccgaatc ctggcaccgg       900
     cgagttaatc cgcgacgtcg ggaaaggtgc accgttaca                              939
//
ID   Gypsy-21_RPr-I repbase;    DNA;    INV; 5341 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, internal region: consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5341
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3427-3427 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           692..2062
FT                 /product="Gypsy-21_RPr-I_1p"
FT                 /translation="MDVYRLLKDELSYELFIRGLQGEGTVAELRKRLANAL
FT                 GSNVLPVERIFSALSPKEELSFCGKKLNELKQQAEIVEESDANEIKRLKTR
FT                 LLHVEERLNRIMKVEKDKEKVLESFKNDVKDLWGFIKQIEEKTEIRELPPP
FT                 PSGSKGTKVNVVESNPTGETTLRTFLDMPAALTGQSTQCQNFHEIIRNRDL
FT                 MLYKWGLKFTGDDQDQPLCSFLAQVEDRAMSRRISKDDLFQSVSEILGGTA
FT                 LVWYRSKRNVIKSWEELVAGLRKTFLDPDYDHQLMEEIRRRTQGPQESIAI
FT                 YIARMQALFSRLSEPISEEQKLAIIKRNVKKEYRALLPLTSFHNIEELETV
FT                 LQNLEIGATMASRYEEPPTKGTLEPDLAYRGPRGKTTKACPVSTSPLPSTS
FT                 SEASKGTRPIIKCWHCHQVGHTYRFCPKRNRSPNSSQPSTSSLKPNASCPN
FT                 CQKKENFDGGRA"
FT   CDS           join(2095..3594,3548..5242)
FT                 /product="Gypsy-21_RPr-I_2p"
FT                 /translation="MSTSDPEWLEWISVVTNFMQGERSIPLLQMARKQDGR
FT                 PHLKISLFGMTFTALLDSGASKSLIGGAGWRRIEKLNLPLQTEDSVKVTTA
FT                 NGTRVDVLGSVQIPVELAGKVKIIEFLVVPSLINPIILGIDFWESMSIVPD
FT                 VKNKRCTFSEGDNEEVQVSAALVERSALTTEQEQELSAFLQNWRSLPINSE
FT                 GTDLVQHSIDTGDNKPIKQRYYPVSPAMQTIVNQELDKMIEEGIVERSTSP
FT                 WSSPVVLVKKPNGQYRFCVDFRKLNAVTKKDAYPLPYVSHILDRLRDARYL
FT                 SSLDLKSAYWQVKVKEEDREKTAFTVPGRGLYQFVRMPFGLHNAPATWQRL
FT                 IDTILGPELEPKVFVYLDDIIVATQSFGDHLDTLELVLTKLQDAGLTVNWE
FT                 KAQVCRAELKYLGYVVDQEGLHVDPEKVAAILNFPQPRTVRQIRRFLGLAS
FT                 WYRRFVPHFASVSAPLSELTKKSKKWCWGTEQDKAFRELKNFPCLRTSTDV
FT                 SRFQKISLVSAPVLTCPDFSRPFLLQTDASSTGLGAILSQVFEDGEKPIAY
FT                 ASRSLTRNEKNFSVTEQECLAVLWAIEKFRPYLEGMEFNVITDHHSLVWLL
FT                 NLKDPHGRLARWALKLQQYAFTIKHRPGKQHAAADALSRVNEDMVEAVNVT
FT                 FEEVEDWYAAMIRKIKKEPANYPNWRVEDHKKLLKKVKEAQNKILSEPYSW
FT                 KVVVPKRQRIDVLQEYHDSPLSGHLGGYKTLHRIKETYYWPGMAADIARYV
FT                 ARCSICLENKPLQKAPAGLMGKQKAITEPWQVISADLMGPLPLSTKQNRYL
FT                 FVVADYFSKYSVLMPMRQATAKGVTKLMEENVILKFGAPQTIICDNGTQFA
FT                 SQEFKTKMQEYGSKIWFTASYHPQANPTERVNKVLKTMLSSYARDNHRNWD
FT                 KELPKLGFALQTAVHEVTGVTPAYLNFGRELRRSGLDYPDRENAEVVPEID
FT                 RESRLDQLSKMPLFYEEIQDRLSRAYERSAKIYNLRRRPVKYRTGDIVWRK
FT                 SHIRSDASQYYSGKLAPKYIKCRIKKMLSNIIAELEDFEGKSMGTWHIKEL
FT                 KADPLPNP"
XX
SQ   Sequence 5341 BP; 1621 A; 1120 C; 1215 G; 1384 T; 1 other;
     tttttctggc gcccaacgtg gggcccttga taatcgggca tttccggtaa gcgtcgtgta        60
     cattacactg ttatctgtcg gtaatctgta gtggagctgt aatttcatct cagaattatt       120
     tttgaataag ttatcaattt gtgtattatt ttatttacgt ctagttacac attttctgaa       180
     attgatactg cggaatacat tctgtgcttc atttgtaatt aatagttggt ttccgaattt       240
     gttgatcggg ctaattatag ttaattcaaa ctgccttgaa gttcgtaata aattttagtt       300
     taatagaamg ggaaacaaat aaaaaaaaaa ataaataaaa aataaaaaat aaaaataaat       360
     aaaaataaaa tagtttagta ataataaata aagcattaaa atagacttaa ttttcagatt       420
     tcttttcgtc tttagtaaac atttacaggg tatttaattt atttgtttat attattgtct       480
     tcattatttc ttgcctttca atgattttat ttctttattc tgagatattc ttttacattt       540
     tttgtcctat tatttaggtt gatattttct tcattatttt cattgttcct ttctctaccc       600
     atttccgttt caatattcct ttccctacgt actttttcct gcatcttgag agcattttaa       660
     attttcttca tcgttttcta ttttcttcac catggatgtt tatcgactac ttaaggatga       720
     actgagttac gaattgttta ttaggggtct tcaaggagag ggtacagtcg ctgagttaag       780
     aaaacgatta gcgaatgccc tgggatccaa cgttttgccg gttgaacgca ttttttcggc       840
     tttatcaccc aaagaggaat tgagtttttg tggcaaaaag ctaaacgaac tcaaacagca       900
     agctgagata gtcgaagaaa gtgatgcgaa tgaaatcaaa cgcctgaaaa ctcgacttct       960
     ccatgtagaa gagcggctta accgaatcat gaaggttgag aaggacaaag agaaggtatt      1020
     agagagtttt aaaaatgatg taaaagatct ctggggtttc ataaagcaaa ttgaagagaa      1080
     aacagagatc cgagaacttc caccaccacc atcaggaagt aaaggaacta aagttaatgt      1140
     ggtggagtct aaccctactg gagaaactac tctaaggact tttctagata tgccagcagc      1200
     tttgactggc caatccacac agtgccaaaa ttttcacgag ataatcagga acagagactt      1260
     aatgctctac aaatggggtc tcaaattcac gggtgatgac caagatcaac ccctctgctc      1320
     ttttctggca caggtagaag atagagcaat gtccagaagg atttctaaag acgacctttt      1380
     ccaatcagtg agcgaaattt taggaggcac tgcactggtg tggtatcggt ccaagcggaa      1440
     tgtaataaaa agctgggaag aactcgtggc agggcttcgc aaaacatttt tggatcctga      1500
     ctacgaccac caactgatgg aggaaatacg cagacgcacg caaggtcctc aagagagtat      1560
     tgcgatttac atagcgagaa tgcaggccct gttttctcgt cttagtgagc ccatctcgga      1620
     agagcaaaag ctagccatca ttaagcgtaa cgtcaaaaaa gaataccgag cccttctccc      1680
     tctgacttcc ttccacaata ttgaggagct ggaaacagtt ttgcagaacc tggaaatcgg      1740
     tgctactatg gcctcgcgct atgaagagcc accgacaaaa ggcactttgg agcctgacct      1800
     ggcttacaga ggacctcgag ggaagacaac taaagcttgc ccggtaagca cttctccatt      1860
     accttccaca tcatcagaag catcgaaggg tacccgacct atcattaagt gctggcactg      1920
     ccaccaagta ggccacacct acagattctg tccaaaaaga aataggtcac ctaacagtag      1980
     tcagccttcg accagcagcc tcaaacctaa tgcgagttgt ccaaattgtc agaagaagga      2040
     aaacttcgat ggcggtcgag cttaagtgga cagacctcga gccgcccctc gaaaatgtcc      2100
     acatctgatc cggaatggct ggaatggatt tccgttgtga caaacttcat gcaaggagaa      2160
     cggtctatac ccctacttca aatggcacgc aaacaggatg gaagaccaca tttgaagata      2220
     tctttgtttg gaatgacttt taccgccctt ttagactcag gtgcttccaa gtcgctgata      2280
     ggtggagctg gatggcggag aatagagaaa ctgaaccttc ccttacaaac agaagactca      2340
     gtaaaggtta ccactgccaa tggtacccga gtagatgttc ttggctccgt tcagattcca      2400
     gtggagttag cgggaaaggt taagataata gagttcttgg ttgtgccatc cctaattaat      2460
     cccatcattt taggaataga cttctgggag tctatgagca tcgtccctga tgtaaagaac      2520
     aaaaggtgta cgttcagtga aggggacaat gaagaagttc aggtgtccgc agctttagtg      2580
     gaaagatccg cactcaccac agaacaagaa caagaattga gcgccttcct acaaaattgg      2640
     cggtcacttc ccataaactc ggaaggtact gatcttgtcc aacactccat cgacaccgga      2700
     gataataagc caataaaaca gagatactac cctgtctctc cggcaatgca gaccatcgtt      2760
     aaccaggaat tggacaaaat gatagaagag ggcattgtag aacgttccac tagtccttgg      2820
     tcctcccctg tagttttggt taagaaacca aatggccaat atcggttctg cgtcgatttt      2880
     aggaagttga atgcagtcac gaagaaggat gcctatccgc taccctacgt atcgcatata      2940
     ttggacaggc tacgggatgc gagatattta tcctctctag atctaaaatc ggcgtattgg      3000
     caagtaaagg tcaaagaaga ggatagggag aaaacagctt tcaccgtacc ggggagaggt      3060
     ctctatcaat tcgttaggat gccttttggc ctgcacaacg cacctgcaac ctggcaacgt      3120
     ttaatagata ccatcctagg gccagagctg gaacccaaag tttttgtcta cctcgacgat      3180
     attatcgttg ctacccaaag tttcggagac catttagaca cgctggaatt ggtgctgacg      3240
     aaacttcagg acgcaggatt aacagttaat tgggaaaaag cgcaagtttg ccgagcagag      3300
     cttaagtatc taggctatgt ggtggatcag gaagggttac acgttgatcc agagaaagta      3360
     gcagccatac tgaatttccc acaaccacgg acagttagac aaattagaag attcctaggt      3420
     cttgcatcgt ggtataggcg gttcgtacca cacttcgcat ctgttagcgc gccattatcg      3480
     gaattgacaa agaagagcaa gaagtggtgt tggggtacgg agcaggacaa ggcttttaga      3540
     gagctgaaaa atttcccttg tctccgcacc agtactgacg tgtccagatt tcagtaggcc      3600
     cttcttgctt caaaccgatg cttcatcgac agggctagga gccatccttt cccaggtgtt      3660
     cgaagatgga gaaaagccca tagcatacgc cagtcggagc ttgaccagga atgaaaagaa      3720
     tttctcggta accgagcagg aatgcttagc agttctgtgg gccatcgaga aatttcgacc      3780
     atacctggaa ggaatggaat tcaacgttat aactgatcac cattctctcg tctggctgct      3840
     gaacttaaaa gatccccatg ggaggctagc ccggtgggcc ttaaagcttc agcagtatgc      3900
     gttcaccatc aaacacagac ctggtaagca acatgcggcg gctgacgcac tatcccgagt      3960
     caatgaggac atggtggaag cagtgaacgt gacatttgaa gaggtagaag attggtatgc      4020
     tgcgatgatc cgcaaaataa agaaagagcc ggcgaactat cccaattgga gagtggagga      4080
     ccataagaag cttttaaaga aagtaaaaga ggcgcaaaat aagatcttga gcgagcccta      4140
     ttcatggaaa gttgttgttc cgaaacgcca gagaatagat gtattgcagg aataccatga      4200
     cagtccgttg tcaggccatc ttggaggata taagacgcta caccgcatca aggaaaccta      4260
     ctactggcca ggaatggcag ccgacattgc tagatacgta gccagatgct caatatgctt      4320
     ggagaataag ccgctacaga aagcacctgc gggcttgatg ggcaagcaga aagcaattac      4380
     ggaaccatgg caagtaatat cggcagattt aatgggtcca ttgcctttat ctactaaaca      4440
     aaatagatac ttgtttgtcg tagccgatta tttttcaaaa tatagtgtct tgatgcccat      4500
     gagacaagcc accgcaaaag gggtcaccaa gcttatggaa gaaaacgtta tcttgaagtt      4560
     cggagctccg cagacaatta tctgtgataa cggaacgcag tttgccagtc aagaattcaa      4620
     gacgaaaatg caagaatacg ggagcaaaat ttggtttacg gcgtcctacc atccccaggc      4680
     taaccctacg gaaagagtca acaaggtttt aaagacgatg ttgtcttctt atgccagaga      4740
     taaccaccgg aactgggaca aagaattgcc gaaactcgga tttgcgttgc aaaccgcagt      4800
     gcatgaagtg acaggtgtga caccggccta cttgaacttt ggcagagagt taagaagatc      4860
     tggccttgat tatcctgatc gagagaacgc agaggttgta ccagagattg atagggaatc      4920
     tcgtttggat cagttatcca agatgccttt gttctatgaa gagatccagg atcgtctgtc      4980
     aagggcctat gaacgctcgg ctaaaattta taatttgagg agaagaccag tgaagtatcg      5040
     tactggagat atcgtgtgga ggaaaagtca catccgttcc gacgccagcc agtactactc      5100
     cgggaagttg gcaccgaaat acatcaaatg ccgaatcaag aagatgctct caaatatcat      5160
     tgcggagttg gaggacttcg aaggaaagag tatgggcacc tggcacataa aagaactaaa      5220
     agccgacccg ctgcccaatc cctaaaacat ccgcaaattc ctacccattc ctcttcctaa      5280
     tcctgttccg tttatttcct ttctgaatcc cgacgtttct ctccggaggc agagggggaa      5340
     t                                                                      5341
//
ID   Gypsy-21_RPr-LTR repbase;    DNA;    INV; 1190 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1190
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3428-3428 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1190 BP; 336 A; 202 C; 213 G; 439 T; 0 other;
     tgttacagat ggaaaatctg gtaacaagaa ttcttaatta attttaattt aaataattca        60
     attggggaca aatgtataca taaaaataga atatgaatac aaagaaatac gtctttggta       120
     agataagcaa gagaaattgt acttcggcct gtttatgaag aagcgaacaa aaggggataa       180
     acagagcggc gcgtatgcga ggagccagag ctcgactgtg agcagtaagt gacggatagc       240
     tctgttataa ggtgacttcc ttttcttcgg cttggccgga tacacctaca attttcatac       300
     agaaattgga aagttcgtgt gaggggttga agttactagt gttggtgaac attttttttt       360
     gtaacatttc ccagtgtggg gattaccctc cacgtaattt actacagaaa aggaagtaga       420
     gagtgctgca gtggactacg gaacaagcgc cggaaaagcg aaaatacaat ttcacccacg       480
     caaaaaacca aagtaagacc caggcctggg gtaagtggag tatttctttt gtatatagtt       540
     atgtatatag ttttcacggg ttttttttgt ttctaattat attttatagt attaaggttt       600
     tcaagtgtaa ttttttattt tttttgtaac cctatgagga taattttatt ggtttagtat       660
     aaggaatagt acagtgataa ggaagcttcc gccttggtct ttttttttcc ctaaacaagg       720
     gttttttttt tatttttgtt ccttctgtaa atacagctat cacttgattt aatatatcgt       780
     atacttgtgc taagtaccgt aagtgtaaag aatattgtat cagaagatat acatttgcca       840
     cccaataatc tttttgattt tttttttcaa acttcttttt caatatataa tttttttcct       900
     ccaaattgcc ttcttctttt tctttttttt gaactccctc cctccacctt attttatttt       960
     tagttgcagg ctaaataaaa actattatta tgttcccgta ggtttcgctg tttcctgcgg      1020
     gactaactta aaacagcgtg gcgccctaaa tacattcttc ttttattctt ttttattttc      1080
     tctcctttac ttattgcatt ttattttatt gttttcttct tcatctcgac ccaccccctt      1140
     ctccattgaa gtgacgctgg gcctaaatgg caccgtaaca caggttacca                 1190
//
ID   Gypsy-21_SI-I repbase;    DNA;    INV; 4821 BP.
XX
AC   AEAQ01024002;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_SI_;
KW   Gypsy-21_SI-LTR; Gypsy-21_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4821
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01024002; Positions    3479    8299.
XX
CC   Positions [3189-3767] - Integrase core
CC   'ACCG' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1655..2962
FT                 /product="Gypsy-21_SI-I_1p"
FT                 /translation="MLDDDVIERSRSQWSSPVVIVRKKDGKFRFCIDFRRV
FT                 NDATEPDAYPLPQIPATLDKLRGAKFLSTLDLKSGYWQVPLSPASRLITAF
FT                 TVPGKGMFQFKVMPFGLHSAPATFQRLLDSILGPDFEPRVLVYLDIIVVSV
FT                 TFEEHLQTLREVFHRLREAKLRINPEKCRFCVERLKYLGHIVDRDGIRTDP
FT                 EKVKAVTDWPPPATVKQVRQFLGVAVPSVYPRLRYRGRAADRANKKTRQVE
FT                 MGGRGTGRVSNAKTHPHRCPRADLPRLLQAVRTANRREKHRSRSRVDAILS
FT                 RSRARNSIREPNAESGRTELQRHRARVLGRDLRDPPDARISRRVPLHRRHR
FT                 PPVATVATETRHAHGTAGTVGVQATAIRRRNQISERRAEPRRGRLITATHK
FT                 RRGKSHPTGPLVQARATRCTRKSRRATRLRDPRGEAVPPRPA"
FT   CDS           2640..4169
FT                 /product="Gypsy-21_SI-I_2p"
FT                 /translation="MREYLEGYPFTVVTDHQSLRWLQKLDTPTGRLGRWAF
FT                 KLQQYDVEIKYRKGALNRVADALSRQPTSAAANLIPPDRWYRRALRAAREN
FT                 PAVQPDFAIREGRLYRHVLHSLDFNESPAEEQWKCCLPRDEWPEILRRNHN
FT                 DAAAGHLGVTKTIARIAQTYYWPGMFREIAAYVQKCENCLRHKVEQRRPAG
FT                 NVHATNVTRLWQLVTVDLVGPLPCSRKGHTWLLVMQDRFSKWTELHPLRQA
FT                 TAPAVTRGIAEQVLLRHGCPESIISDNGTQLKSRELRELLHAYRIRHVCTP
FT                 THAPHCNPVERTNRVIKTMIAQYVDRDHCNWDERIPELAYNTARHEATGYT
FT                 PAFLNLGREIFTPARVGEATPPPTPPPDNTRRYLEEAYDLVRVHLARAFQR
FT                 QQKYYNLRRRPWQPKIGEWVWKREHPLSNKASAFNAKLAPKFRGPLEVRYK
FT                 ISPVIFDLRDRHGRWTRHVHIQDLKPAPRETDDRGNTDNKATDPGEKTEDE
FT                 QPNNNNGDDSSGEA"
XX
SQ   Sequence 4821 BP; 1216 A; 1577 C; 1285 G; 743 T; 0 other;
     tggcgcccga acagggacaa gaccggaaga aaggaagggc cgccggccta aaaagctgga        60
     tctacgagct acataaggac gttctcctcg aggagatgga gacgctcggg ctagatacag       120
     agggaaacct cgatacttta cggcaacgca tgagccaata tgtcgaggaa aatccggacc       180
     tgttccgcgc agccgcgctt cccccgccga ccgaaccagc aacgaccaga ccgacggcat       240
     taacggcgac ctccgccgca catcccgcac cgacgctgac gctcctttga ccgccgcgac       300
     tcaccctgca ccgtgcaacc cccaccgaca ccagcggacc tccggatggg tccacccccg       360
     ctaaaatcat gaatcaaatg cggaaatggg gggtacattt cgacgggaaa acccgtgggg       420
     ttttctggag cgggtcgagg aactgcgcgc cggctacgat ttttcggatc atcaggtctt       480
     gctggggcta tcagaattat tgaaagggga tgccctcctg tggtaccgaa actcacggaa       540
     cgcgtgggac aaatggcgcg acttcgtcag tgacttcaag gcgacctacc tgccaccgcg       600
     ctaccggagc tatctactgc gctagatacg cgaccgcgtt caaaagccag gcgaaccgta       660
     tctcaaatac gcaacgacgg tcctcttctt aatgcgaagg gcagagaatt tctccaccga       720
     ggagaaagtc gaccagctgt acgataacat gcgccccgaa ttccaactgc acgtacgacg       780
     agccgacatc cgcacccccg ccgagctact ccaacgcgtc gtcaagatcg aacgttgccg       840
     agcgctcccc tccagtcacg cgcaggaacg caagaacccc accgttgccg cgacgtacga       900
     tcggagcgaa tgttgttggc gatgtaaaca gcgggggcac acgcgtttcg aatgccgctg       960
     attgccgcgc aaattttgct cgcaatgtgg caaagacggc gtgctgaccc gcgactgcca      1020
     tccgccggcg ggaaacggcg ccaggaccgg cgacactccg gccgaccacc ggtcctccga      1080
     ataaaattta cgccccgacc gcacctaacc gtgcgtttgc gcgaccagga cctcacggca      1140
     cttctcgata ccgggtcgga ggtgtcgttc attaacctcg ccaccgcccg ccacgccgag      1200
     gcaagcggct ttaagatcca acgcgagagt aataccgtac agctggccga cggtcagtcg      1260
     atggaactgc ccggccacgt acgcttgacc gtgacaatcg gacaccgaca catctgacac      1320
     aaattccgca taatgccaag catgaaaacc accatgctcc tcggtataga cgcgtgggca      1380
     aaagtaggcg cgcccatacc tatccccccc gccggactac ggggccgcga ggagaatcac      1440
     gccgtgacca acgtatccac gttgctcacg cccaccgaat cagctgagct gaaccgcttc      1500
     ctcacaaccg aactcgcgca gttcgagggc gtagccagcc cgacgacaat aacgcagcac      1560
     atcatccggt tgaaacctgg ccgcgaaccg atcaaacagc ggtaccgacc gcgaaatccc      1620
     gctatgcagg ccaattgacg ccgaaatcac ggcaatgctc gacgacgacg tcatagaacg      1680
     gtcacgaagc caatggagct cccccgtcgt aatagtgcgc aagaaagacg gcaagttccg      1740
     attttgcatc gacttccgtc gcgttaacga tgcgaccgaa ccagacgcgt acccgcttcc      1800
     ccagatcccc gctacgctcg acaaactacg cggcgctaag ttcctatcca cactagactt      1860
     aaaaagcggc tactggcaag tgccactatc ccccgcgagc cggctaatca ccgcgttcac      1920
     agtacccggc aagggaatgt ttcaatttaa agttatgccg ttcggcctgc actctgcgcc      1980
     cgccaccttt cagcggctgc tcgattccat actcggaccc gacttcgaac cgcgcgtgct      2040
     ggtctacctc gacatcatcg tcgtcagcgt cacgttcgag gaacacctgc agacgctacg      2100
     cgaagtcttt caccggctcc gcgaggccaa gctacgaatc aacccggaaa aatgccggtt      2160
     ctgcgtggag cggctcaagt acctcggcca catcgtcgac agggacggta tccgcaccga      2220
     ccccgaaaag gtcaaagccg tgaccgactg gccgccgccc gctaccgtca aacaggtccg      2280
     acagtttctt ggcgtcgcgg taccgtcggt ttatccaaga cttcgctacc gtggccgcgc      2340
     cgctgaccgc gctaacaaaa aaacacgcca ggtggaaatg gggggccgag gaacaggccg      2400
     cgtttcaaac gctaaaacgc accctcaccg ctgcccccgt gctgacctgc cccgacttct      2460
     ccaggcggtt cgtactgcaa accgacgcga gaaacaccgg tctcggagtc gtgttgacgc      2520
     aattctttcc cgaagtcgag cgcgtaatag catacgcgag ccgaacgctg aatcaggccg      2580
     aacggaatta cagcgccacc gagctcgagt gcttggccgt gatctgaggg atccgccgga      2640
     tgcgcgaata tctcgaaggg taccccttca ccgtcgtcac agaccaccag tcgctacggt      2700
     ggctacagaa actcgacacg cccacgggac ggctgggacg gtgggcgttc aagctacagc      2760
     aatacgacgt cgaaatcaaa tatcggaaag gcgcgctgaa ccgcgtcgcg gacgccttat      2820
     cacggcaacc cacaagcgcc gcggcaaatc tcatcccacc ggaccgctgg tacaggcgcg      2880
     cgctacgcgc tgcacgagaa aatcccgccg tgcaacccga cttcgcgatc cgcgagggga      2940
     ggctgtaccg ccacgtcctg catagcctag actttaacga gtcaccggcc gaggagcaat      3000
     ggaagtgttg cttaccgcgc gacgaatggc cggaaatcct ccgccggaat cacaacgacg      3060
     ccgccgcagg ccacctcggc gtgaccaaga cgatcgcgcg aatcgctcag acgtactatt      3120
     ggccgggcat gttccgagaa atcgccgcgt acgttcaaaa atgcgaaaac tgtctgcgac      3180
     acaaagtgga gcagcgcaga ccggccggca acgtgcacgc gacgaatgtc acgcggctct      3240
     ggcagctggt caccgtagac cttgtaggac ccctcccctg ctccaggaaa ggccacacgt      3300
     ggctactggt catgcaggac cgattctcaa aatggacaga gctacacccc ctccgacaag      3360
     cgacagctcc cgccgtaacg cgcggcatcg cggaacaggt cctgctgcgt cacggatgcc      3420
     cagaaagcat catctccgat aacggaacgc agctaaaatc gagagagcta agagaactcc      3480
     tacacgctta ccgcatccga catgtgtgca cgccgactca cgcgccgcat tgtaatccag      3540
     tagaacgaac gaaccgcgtg atcaagacga tgatcgcgca atacgtggac cgcgatcact      3600
     gcaactggga cgaaagaatc cccgaactgg cttacaatac ggcgcgacac gaggcaaccg      3660
     gttacacacc ggcgttcctg aatctcgggc gagagatatt cacccccgcg cgcgtcggcg      3720
     aagcgacgcc ccctcccact ccgccgccag acaacacacg acgctacctc gaggaggcct      3780
     atgacctagt acgcgtacat ctcgcacgcg cgttccaaag gcaacaaaaa tactacaacc      3840
     tccgtcgtcg cccatggcaa ccaaaaatag gcgaatgggt gtggaaaaga gagcaccccc      3900
     tgtccaataa agcctccgcg ttcaatgcca aattggcacc gaagttccga gggcccctcg      3960
     aggtacgcta caaaatctcg cccgtgatct tcgacctacg cgacagacat ggacgatgga      4020
     ctcggcacgt acatatacaa gacttaaaac cggcgcctcg cgagaccgac gacaggggaa      4080
     acaccgataa caaagcaacc gatcccggag agaagaccga ggacgagcag ccaaacaata      4140
     ataacggaga tgactcgagc ggagaggcat aaacaaaggc aaaccgtgac gacagccaaa      4200
     gtcaaaaccc cacagcaacc gtcacttgca agacgaccgc tcgacgagat ggatcgcacc      4260
     gagcaagaaa tcataggcaa aatcaatcaa ctcctggcgg agtacgagga gtacgatccg      4320
     gcgaatccag ggatcgatcc ggcctggaac cagctccggc ttcgtcaacc gaccccgccg      4380
     ccgcagacgg cagcaacaga aatcccgcgc agtatcgcga tcgccggcca aaagggagga      4440
     cgtctcgtct agccctccga tcgacggaac cgggccaaaa tggagtggct aatcaatcca      4500
     cccaccgcac ggccgaaatc ccgccgacag cctgcggcaa catcaccgca gcacccgtcg      4560
     cttgaaccgg cgcgagtcat gggaccactg ccacctccgc cgattgaagt ggaggtcgaa      4620
     ccagggcacc gaatcagcgt gccacacttc gctgcccacc gcgcatgaca gtggaagatc      4680
     cgctcgggag gaaagcggtg gcacgtacgc tacaaccacg acggaagcgt acgccgcgtc      4740
     cgagaaattc cgccgaatta caacaaggga acacatatgt ctcgtgcctc aaattcaggc      4800
     acttcctaga aggggaggtg a                                                4821
//
ID   Gypsy-21_SI-LTR repbase;    DNA;    INV; 1019 BP.
XX
AC   .
XX
DT   14-FEB-2011 (Rel. 16.02, Created)
DT   24-FEB-2014 (Rel. 19.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_SI_;
KW   Gypsy-21_SI-LTR; Gypsy-21_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-1019
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
CC   4bp TSD.
XX
SQ   Sequence 1019 BP; 242 A; 346 C; 260 G; 171 T; 0 other;
     tgtgacgatg caccccgtat agaaaaacat ccccacggca aacatcagcc gaaaagaccg        60
     ccgggccata accggggatg ccgtgggcac ccactcttaa gaatccaagg ccgcgatacc       120
     gcctggtgac aaacatcgcc agaagaaacg cgccgagcca tcgcacgcgc tgagtcggcg       180
     cgcacgcact ctcggaggac acgcggtcct ccctaccccg acgactccgc cgtcaagcgc       240
     cgagaaagat aatggaggcg agcgaagtcg ctcgatataa atagggccac cgcgacgaga       300
     aacgacactc tgccaccgac cagcttcccg atcacggtcc gctgcgtcgg cgatatcctg       360
     ctccttaaag ttggaaaccc ggtcgaagag tgcttggccg cggcgagagg gtactccgcc       420
     tccgacgcaa atccattcga catacaccag cctccgcgaa ccgaggacca cgagtctcgg       480
     tccacgagcc ggtctccggc gacccagagg ctgccctcct ctcctcgcga cacccttcaa       540
     aatcgcgacc gccgtgttcg ggctctcggg tcaaggtact tgacagagtg tcgcgcgtcc       600
     gatctgcctg cgacgattcc gtcgcgaaac cgccatatcg cgcgggaacc cgatccgccc       660
     aagataatcg cgtcacaaca gctagcccgc gaatcgtacc gtaggccacg cctaccgcgt       720
     cgccgaagca cgccacacag gccgcggggc cgcacctaca cggaatcgct ccgaaacgct       780
     cccgtgtagt ctagcgccgg gacgcagcta tacgtaagca cctgtatata tgtaaacagc       840
     tcaaacgtgt acatatcatt tagcaaatat atctatgtaa ctgcattcga actcatatct       900
     cgcatcgagt aattcaaacc gctccgacga ctttcctttc tcccgcgtcg aaccattttc       960
     gcggtctcgc accgggagtc cgacgagctg atccgcgcgt ggaaagtcgg taaattaca       1019
//
ID   Gypsy-21_SiCu-I repbase;    DNA;    INV; 5247 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5247
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5044-5044 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1189
FT                 /product="Gypsy-21_SiCu-I_1p"
FT                 /translation="MGDKDKKGESTTSSADNKGESTTSAATTAKPVTLDDA
FT                 LVALTSLQNQHAKVVQANNQLCVKYNKLQADFQTFQSSCMRYDNSFKIPVY
FT                 DPSSTTAEVFIEQIEEFLTLKCVDSGSWHILISSMFKEGSEHQAWWRAKKE
FT                 SVVTWDSFKDAFKRYEGYDEAKDHLLRTFFLKEQKPXEAFESYAWDVYSLF
FT                 CKLHGKADNKAIVERILNSCITELASELLPLKCKTVEDLVCSARLVIININ
FT                 KVRSKRNIPLLRARRTDPLPTQQSHNKHFQHPRNNSKPQNNNPHGKDGNDA
FT                 RDAXRQMKSCKYCKKVGHVIEECWKKQKADKRRSEGHEKPFNSGTHNFDQD
FT                 PFFGPGN"
FT   CDS           1129..4455
FT                 /product="Gypsy-21_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KAVQLWHPQLRPRPILWSGKLNREAHSTESILLPLDK
FT                 NKKSTPQVFVHINKRRVISLLDTGASHSFVSKSLCIKLNIPISKTNVLPTI
FT                 KIGNNSYIKPLGTCKIPITLANLSLTHDFFVIDDAPFKCILGSDFIIKTRI
FT                 ILDLSSGAYYIKNKPQKLFHFINQDLLCALCGLNSLQEKDLNELLEKYKFM
FT                 LGDAVGLTDLVECELKVDGPPIIQKPYPVSPHKRNVIKEHVDKMLKLGIIS
FT                 PSKSEWASPVHLKKEASGYRFCVDMRKVNQRTKHDPYPIPRIDALLQRLGN
FT                 ANFLSKIDLKKGYWQIKMHDNSKQYTAFICDEGKYEFNRMCFGLKTAPSIF
FT                 QRMMNRILGTARGVWADAYLDDLIIYSHSWQDHLAHIKEILNRLYKAGLTV
FT                 NKDKCEFGKTTIKYLGFIVTPEGVTVDNEKTEAVTHYPRPKNAKQIKKYLG
FT                 LCGWYRHFVENFADIAEPLSSLMKKDAIFIWTDKQEHAFQTLKNHIVNSVT
FT                 LAYPDFTRPFILRTDSSDLGLGSVLAQKSVXGHERPIAFASRALTKTEKSY
FT                 HATEKECLAIVWSLKRFEQYLDGQEFTLITDNRALQWLHSMRDVNSKFMRW
FT                 ALKIQDFSPTIVHCSAKYNVVADALSXAPVGKAEXEEVKSVMDAPSHVMCN
FT                 MHTFASDINLXTIRDAQKSDAECCALLTDLPSDFVVENDIIXKITNANKKL
FT                 PFIPKSIRHDILRHFHDNPHSGHLGYRKTIKRLLSRVFWFKMHEDIYAYVR
FT                 SCNICQSVKVPQTKPHGNMQPVKAFGCFDVLATDLIGPLPTTKNRKSWILV
FT                 VVCHFSKWVELFALHDAKATTIAKVLHNEVFCRYGAPKVLLSDNGTNYRGN
FT                 VFEQLCSSWNITHRFTTTYHPQSNITERINRNIRSILSSYAYSKHKSWDEY
FT                 ISTTALALRTAISDTTGYSPALLNLGRELLLPFDRNLEELADEFESRYAYQ
FT                 SELGKKLHSXYTQAKANIEKAQASQQKYYNARHSNXKLAVGDLVMLKTHFI
FT                 SNKAKGLSKKFAFKFTGPYIITEVCSPVTYSLASKXTNESVGTHNIKNLRV
FT                 YHDRPSFSDSFNSXTNAECATSEEALPHESSSSSSKAKATNQNCKYNLRSR
FT                 X"
XX
SQ   Sequence 5247 BP; 1786 A; 1117 C; 986 G; 1309 T; 49 other;
     tatggcgccc aacgatcgtt ttagttaatt atgagccttg atctcaatcg gtaaagcttc        60
     agatctacta gttagctcgt ttcaaaactt aattattttc tcattccatt cttaaattac       120
     cccgaagaac tagccaaaaa tgggagacaa agacaaaaaa ggtgagagca ccactagcag       180
     tgctgacaac aaaggtgaga gtaccactag cgctgccacc acagcaaaac cagtcacact       240
     agatgatgca ttagttgcac tgacatcact gcaaaaccaa catgcaaaag ttgtacaagc       300
     aaataaccaa ctatgcgtca aatacaataa actacaagcc gatttccaaa ctttccagtc       360
     aagctgcatg cgctatgaca attcatttaa aatwccggtc tatgacccta gctcaacaac       420
     ggcagaagtt ttcattgaac agatagaaga attcctcact cttaagtgcg tcgactcagg       480
     aagctggcac atwttaatca gtagcatgtt caaagaaggc agcgagcacc aagcwtggtg       540
     gagagcaaag aaggaatcag tggtgacktg ggactcattt aaagatgcat ttaaacggta       600
     tgaaggttat gacgaagcaa aagaccactt actacgcaca ttcttcctca aggaacaaaa       660
     accagamgaa gcatttgaaa gctatgcatg ggatgtstat tcwctkttct gcaagttgca       720
     tggtaaggca gataacaagg caatagttga acgcatttta aatagctgca taacagaact       780
     agcttcagaa ttacttccac tgaaatgcaa aacagtcgaa gatctcgtct gctcagcgcg       840
     tctggtcatc ataaatatta acaaagtccg kagcaagaga aacataccac tactacgtgc       900
     acgtagaaca gatccactgc ccacacaaca gagccataac aagcacttcc agcatcctcg       960
     aaacaacagt aagccacaaa acaataaccc acacggcaaa gatggtaatg acgctagaga      1020
     tgcawatagg caaatgaaat cttgcaaata ctgcaagaaa gtaggccatg ttatcgaaga      1080
     gtgctggaaa aagcaaaaag ctgacaaaag acgcagtgaa ggtcatgaaa agccgttcaa      1140
     ctctggcacc cacaacttcg accaagaccc attctttggt ccgggaaact gaatagggag      1200
     gcgcatagca cggagtctat ccttctccca cttgacaaaa ataaaaaatc aactccgcaa      1260
     gtatttgtac atataaataa acgacgagtc atatccttac tcgatacagg tgctagccac      1320
     tcgttcgttt caaaatcact ttgcataaag ctaaatatcc ctattagcaa aacaaacgta      1380
     ctacctacta tcaaaatagg taacaattca tacataaaac ctctaggtac atgcaaaata      1440
     cccatcacac tagcaaactt atcactcact catgattttt tcgttatcga cgatgctcct      1500
     tttaaatgca tcctaggcag tgattttata ataaaaacac gcatcattct mgacttaagt      1560
     agcggtgcct actacataaa aaataaacca caaaaactat tccacttcat taaccaagat      1620
     ttactttgtg cattgtgcgg tttaaactca ctacaagaga aagacctaaa tgagctttta      1680
     gaaaaatata aatttatgct tggcgatgct gttggcttaa cggaccttgt agaatgtgag      1740
     ttgaaagttg atggtccacc tattattcag aaaccatatc cagtatcacc acataaacgc      1800
     aacgtcatca aagagcacgt tgacaaaatg ctcaagttag gcataatatc cccatctaaa      1860
     tcagaatggg cttctcccgt tcacttgaag aaagaagcga gcggttatcg cttttgtgta      1920
     gacatgagaa aagtcaatca acgcaccaag catgatccat atcccattcc acgcattgac      1980
     gcwctwctcc agcgacttgg caatgcaaac tttctctcaa aaattgactt gaagaaggga      2040
     tattggcaaa tcaagatgca tgacaatagt aaacagtaca cggcctttat ttgtgatgaa      2100
     ggaaagtatg agtttaatcg tatgtgcttt ggtctgaaaa ctgctccttc tatttttcaa      2160
     agaatgatga acagaatact tggtacagca cgcggagtat gggcagacgc ctaccttgat      2220
     gatctgataa tttactcaca ttcatggcaa gatcatctcg ctcacattaa agaaatttta      2280
     aatagactgt acaaagccgg actcacagtg aacaaagata aatgtgaatt cggaaagaca      2340
     acgataaagt acctaggctt tatagttaca ccwgaaggag tgacagtaga caacgaaaag      2400
     acggaggctg ttacgcatta cccccgtccc aaaaatgcaa agcaaattaa aaaatacctc      2460
     ggcttgtgtg gatggtatag gcattttgtt gaaaatttcg ctgatatagc tgaaccactc      2520
     tcatcactca tgaaaaaaga tgcaattttc atatggacag ataaacaaga gcatgcattt      2580
     caaacgctga aaaaccatat agtaaactca gtcacattag catatccaga ttttacacgt      2640
     ccattcatct taagaacaga tagtagtgac ctcggattag gttctgtgtt ggcacagaaa      2700
     agcgtcgakg gacatgaaag gccaattgcg tttgcaagcc gtgcactwac aaaaacagaa      2760
     aagtcatatc atgcgacaga aaaagaatgc ttagctatag tgtggagttt aaagcgcttt      2820
     gagcagtact tggatggkca agagttcaca cttatcacwg acaatagagc cttacaatgg      2880
     ttacacagca tgcgcgatgt gaacagtaaa ttcatgagat gggcgcttaa aatacaagac      2940
     ttttcaccca ccatcgttca ttgtagtgca aaatacaatg tcgttgcaga tgcattaagc      3000
     mgwgcaccag tgggaaaagc agaagawgaa gaagtaaaat cwgttatgga tgctccctca      3060
     cacgtaatgt gtaatatgca tacattcgcc tcagatatca atctcgawac wattagagat      3120
     gcacaaaaat cagacgctga atgctgtgcg ttgctcaccg acctgccttc agactttgta      3180
     gtagagaacg acataatatw saaaataacc aatgcgaata aaaaactacc gttcatccca      3240
     aagtccatcc gccacgacat cttacgccat tttcatgaca atcctcattc tggtcattta      3300
     ggttatagaa aaaccatcaa acgactcctc tctcgcgtct tttggtttaa aatgcacgaa      3360
     gacatctacg cgtatgtacg ctcttgtaat atatgccagt cagtcaaggt accacaaacw      3420
     aaaccgcacg gaaacatgca acctgtgaaa gcatttggct gttttgatgt actcgctaca      3480
     gacttgatag gccctctacc tacwacgaaa aataggaaat catggatact wgtagtggtt      3540
     tgtcattttt ccaaatgggt cgagctcttt gctcttcacg atgcgaaagc aacaacgatt      3600
     gcaaaggttt tgcataatga ggtgttctgt aggtacggtg caccaaaagt attgctgagt      3660
     gataacggta caaattatag aggcaacgtc tttgaacaac tctgttcatc atggaatatt      3720
     acgcaccgtt ttactaccac ttatcaccca caatcwaaca taacagagag aataaacagg      3780
     aatattcgct ctatmcttag ctcatatgca tactccaagc ataaatcatg ggacgaatat      3840
     atcagtacaa cggcacttgc tttamgaacg gcgataagcg atacgacagg ctacagtcca      3900
     gcactactga atttgggtag ggaactacta ctgccatttg accgtaacct kgaagaactc      3960
     gcagacgaat ttgaatctcg ctatgcttat cagtcagagc ttggtaaaaa gttacattct      4020
     mtatacacgc aagcaaaagc gaacatwgaa aaagcgcaag cgtcacagca aaaatattat      4080
     aacgcacgtc atagcaataw gaaactagca gttggtgatc tggtaatgct taaaactcac      4140
     tttatttcga ataaagcaaa aggtctmtcs aaaaaatttg catttaagtt cactggccct      4200
     tatattatta cagaagtatg tagtcctgtt acttattcwc twgcaagcaa agawacaaat      4260
     gaaagtgtgg gcacacacaa cataaaaaat ctccgtgtct atcatgaccg tccttcattt      4320
     tccgattcwt ttaatagtsa aacaaacgcc gagtgtgcta caagtgaaga agctttacct      4380
     cacgagtcaa gtagttcaag tagcaaagcc aaagctacaa accaaaattg taaatacaac      4440
     ctcagaagtc gtaaktagtm gtgccaacta caataattat tgtaacttgt taaaaaacaa      4500
     ttattactga atctccagta taataccatc ataaattgta agtaaaatac tactatattm      4560
     tcattgtcgt tgtaamctwt aaaattgtaa atagtgccta aactcaagaa tatttaattg      4620
     aaamtgaaaa cgccattgtg ttgggtaaaa ttgtaaatag ctttaaatat tatttcttct      4680
     aatactcctg ctccagctgc aatgccaacg agaaccacaa cagtgatcta ccaacagttg      4740
     ccagctgagc atgtccagga tttctccctg cgtgtctaca aggggatgaa agaaaacttt      4800
     ggtcaagtct ctgacgccgt ggtgtttgca cgggtgatga tgggccttca tcacagtgtt      4860
     gtcagagtgc tacctgaaaa cctcccaaaa tctctgggag aactgttctg cttttgggaa      4920
     aaaatcgaca ccctaattcc gcctaccgac ttgttctgga ctgaaagacc agggacgcct      4980
     gacgaggtcc cgaacatttc agtaatggtg tctgacgttc tcgatcggat cgtgcctcac      5040
     aaccccaaag cctgctataa atgcggggaa acaggacact tcgccttcca gtgcctcaac      5100
     ccacgaaaca aaatcatcaa accaaagcgt aagaataaaa aacgcggtat taaaaagtgt      5160
     acctgtaatt gtaaatgtaa gactaatgtg aagttagtcc gttaaaaatg attgctccag      5220
     gtatggaggc gtttcgggga ggggata                                          5247
//
ID   Gypsy-21_SiCu-LTR repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-594
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5098-5098 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 594 BP; 182 A; 123 C; 93 G; 194 T; 2 other;
     tatgaggtcc gtattctaag ttgttagaat cggtattgtt caagacatta ttcaaatata        60
     aattagaata ttcagtttgt ttaagatgaa tggagaattg ttccattccg ttgttcatga       120
     tgaatgtaca aaagccaaat actcacaata ctaaatgtag gtcaagtcaa aactataaaa       180
     actctgtcaa accgaaccta cctagctcag tttaccgctg actctcctct tggactgtga       240
     ttgtccattt agctcgtgac ggctaaaact catgaagcga gaagcttcct ttaccttgat       300
     gcattgcgag ttgcatcctt gaccattgtg atttggtcag gtcggacgag acgtccattc       360
     ccaattccta ttcctaccta acccgggtaa ctatattata tatmaattaa gctagcttaa       420
     gaatccctaa atgatgaata tattatgtac ttaatataca atgctttcct ttagaataaa       480
     tatcaatgca awatgaatta actggctcga ttgaaccgac tccctttctc tcttcttatc       540
     atttcttatg tgaaatccat gtcatgttcc tacaactagc atagaaccct caca             594
//
ID   Gypsy-21_SiOr-I repbase;    DNA;    INV; 4894 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4894
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 357-357 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           556..4893
FT                 /product="Gypsy-21_SiOr-I_1p"
FT                 /translation="MTSITMSDEQFQQLLARLSVGNQNPTQVASAQNGNFT
FT                 GCLSRFDGAKISSVQAFIDSVSIYKDCAQVSDENALKGLPMLLDGFAAEWY
FT                 QGVKATISTWKEAIDLLKLTFGPQKPAYRVYRELFANEQDESTPTDIFVCK
FT                 ARSTLAQLPNNTLTEETQLDMVYGLLHRRIREKLSRNKINNFNELLSQARL
FT                 VEETFERTDSRNEKTNVHADKDKRPRCLYCRNFGHVKEDCRKLKKTQSADS
FT                 RNSVPQPTASSNVAVFQKEPKKNDGIACYGCGNPGYIRSNCPKCSPKKNED
FT                 DHSVMSTEFLCNTINHESPSTRPLVPISIHQHNGYAYLDTGAKSSVAGSAL
FT                 AQLLLKDNIPYIIKNDLEMTLADGIRRKVTAHIFDIEIIFHGRSVPIEMLA
FT                 VPEHQNSRTLLGVDFIHKANVILDIPNKTYFFGENPHECYNFTAEESVSLV
FT                 SVNTVTFSQIILRDEEGSSLQPEERKNLNSLLQENHTVFESSNEPTPYAEH
FT                 CIVLTDDNPIAVPPYRMSEPKKIQLKNELDKLLENGTIEECDSPYAAPVVL
FT                 VTKKDDGIRLTVDYRKLNAVTRSCKYPLPRIDDLLHEAKKTNYMTTLDLKS
FT                 GYHQVNVKASDRDKTAFITPFGTYRYIRMPFGLSTAPSTFQKLMDRFKSGI
FT                 PEVLLLAYLDDLIVISSSFEEHLADLQKVFKRLNTFKLKLNRKKCFFCCKS
FT                 VRYLGHIISPEGVQPDDSKVEAIMKMTPPKNVKQLLSFLQTCSWFRRFIHN
FT                 FAEVSKPLSMLTKKNATWNWKLPQQEAFDQLKVLLSSAPILRQADTKLPYI
FT                 LRTDASSYALGACLLQGEGADERPVEYASRLLTTAEQNYTTTEREALAIVW
FT                 AIQKFRGYVEGATILVQSDHQPLRWLMSLKTPTGRLARWALSLQAFDLHID
FT                 YITGKKNVIADTLSRPVLDESPDSINMISVDMPSKPASDVRAEQLEDPELR
FT                 KIITDLESSATSTDFKKWAERGYIMSNGILFRYNPDIDEEEPQQVIPSSQI
FT                 PHILREYHDLETAGHYGIERTYQRIARRYYWMGMRRNITDYVGQCIECKRY
FT                 KPTNLKPAGLLQTPIQAQRFEVISIDLFGPLPETPDGYRWIFIVEDTASRW
FT                 TELFPLKTATAEACARCLTDEIILRYGVPRRIISDNGVQFVGSIMQQLAHC
FT                 LGFKQCLTPVYHPESNPVERKNRDLKTQLAILTSDDHTSWIDKLPAVRFSM
FT                 NTVKCQSTGYTAAFLTFGRELRTPDDVNRDMRVIVQTDNFVPQITPYLLTL
FT                 SNTLHEARENHEKNQDRRTNIKNEHRRPYNYSVGDKVLVTTHVLSKASNQF
FT                 TSKFAPRRDGPYLIQKIVSPTTYILSSTDKPDQPLGKYHTSALTPYQISEE
FT                 RNLSPLQPLRNRGRPPKLSSDSSHTPKDTTIPQNDSDSVEQTPTSAEDPFP
FT                 AIQPKYHPRKKIQKKCICCSTREDASVVQRGR"
XX
SQ   Sequence 4894 BP; 1640 A; 1078 C; 918 G; 1258 T; 0 other;
     aattggcgcc caatcgtgga ccataaaagg tgaaaaatcg tagaattgtt ccaaaaaaaa        60
     accgaagtct tgcagtcata gtggttcgcc ccgaataagc ctttgcagtc gtaaagcaat       120
     accggatctt tggcaatcct ttcctgaaac aagaaactgt aagtccaaaa gcttttatta       180
     atcaattctt tgaaaattat tgctcaagaa gaggttaatc ccgccgaatc gttagttgtg       240
     acgtcacacg cccaaaaaag tcaggagcga taccacgtat ccaaatcatt cttgacgtaa       300
     tcgtttttga agaaaatcct tggattggat agaaatttgt tttgctccca gttcaccacg       360
     aaatttcaat tcgcgaatgg tttaactgat taaggactaa caaaacactc aaataagact       420
     ttcttttaca tcagtgtgct cacggttcaa gaaaatcaac agtatttata aatacccatc       480
     gaattctgtg caaccacgga cacaaacaga tataatttac gttcccgtca gaactaccct       540
     caaaataacg aaaacatgac gtcaataaca atgagtgatg aacagtttca acaactctta       600
     gccagacttt ccgtaggtaa tcaaaatcct actcaagttg cttcagctca aaatggaaat       660
     tttactggtt gtttgtcgag atttgatggt gcaaaaatct ccagtgttca agcatttatt       720
     gactccgtat cgatatataa agactgtgcg caagtatcag atgaaaatgc gttgaaagga       780
     cttccgatgt tactagatgg tttcgctgcc gaatggtatc aaggtgtaaa agctaccata       840
     agtacctgga aagaagcaat tgatcttttg aagcttacgt ttggcccgca aaaacctgcc       900
     tatcgtgtgt atcgtgaatt atttgcaaat gaacaagatg aaagtacacc tactgacatt       960
     ttcgtttgta aagcccgttc tacgctagca caacttccaa ataatacgct aacagaagaa      1020
     actcaattag acatggtata tggactccta catcgaagaa tacgtgaaaa actttctcgc      1080
     aacaaaatca acaacttcaa cgaacttcta tcccaagcta gactagttga agaaacgttt      1140
     gaacgcaccg actcacgaaa tgaaaagaca aacgtccacg cagacaaaga taaacgtcca      1200
     agatgtctgt attgtcgtaa ttttggccat gtaaaagaag actgtcgcaa gctgaagaaa      1260
     actcagtcag cagattcaag aaattctgta ccacaaccaa ctgcttcaag taacgtagct      1320
     gtatttcaaa aagagcccaa gaagaatgat ggtattgcgt gctatggatg cggaaatcca      1380
     ggttacatca gaagcaactg tccaaaatgt tctccgaaga agaatgaaga tgaccattct      1440
     gtgatgagta ccgaattcct ctgtaacaca atcaaccacg aatcaccatc gactaggcca      1500
     ttggttccca taagtataca tcagcataat ggatatgctt acttagatac aggtgcaaaa      1560
     tccagtgttg ccggatctgc attagctcaa ctactattaa aagacaatat accatacatt      1620
     atcaagaacg accttgaaat gacacttgct gatggtatta gaagaaaagt taccgcccat      1680
     atttttgaca ttgaaatcat atttcatggt agaagtgttc ctatagagat gttagctgtc      1740
     ccagaacatc aaaacagtcg tacattacta ggtgtagact tcattcacaa ggctaacgtt      1800
     atccttgata ttccaaacaa gacatacttc tttggtgaaa atccacatga atgttacaac      1860
     tttaccgcag aggagtctgt ttcgctagtc tcagtcaaca ctgtaacctt ttctcagata      1920
     attctacgag acgaagaagg tagttctttg caaccagaag aaagaaagaa cttaaatagt      1980
     ctcttacaag aaaatcatac agtcttcgag agtagtaacg aaccaactcc ttacgcagaa      2040
     cattgcatcg ttttgacaga tgacaatccc atcgcagttc ctccataccg aatgtcagaa      2100
     ccgaagaaga tacaactcaa gaacgaactt gacaaattgc tcgaaaatgg tacgatagaa      2160
     gaatgtgact caccttacgc cgctccagtt gttttagtaa ctaagaaaga tgatggaata      2220
     cgcttaactg tagactacag aaagttaaac gccgtaacga gatcgtgcaa atatccgttg      2280
     ccaagaatcg atgatctgct tcatgaagct aagaaaacaa attacatgac taccctagat      2340
     ctaaaaagcg gttatcacca agttaatgtc aaagcctcag atcgagataa gacagctttt      2400
     attacccctt ttggtacgta cagatatatc agaatgccct ttggactttc cacagcgcct      2460
     tcaacgtttc aaaagttgat ggatcgtttc aaatctggaa tacctgaagt tctcctattg      2520
     gcctacctag atgacttaat cgtcatttcc tcaagttttg aagagcatct agctgatctt      2580
     cagaaggtat ttaaaagact taacaccttt aaactgaaat tgaataggaa gaaatgtttc      2640
     ttttgctgta aatctgttcg ataccttgga catattattt ctcccgaagg tgtacaaccc      2700
     gacgactcaa aagttgaagc gataatgaag atgacgccgc ccaaaaacgt taagcagttg      2760
     ctcagtttcc tgcaaacttg ctcttggttc aggagattta tccacaattt tgctgaagta      2820
     tccaaaccgt tgtcgatgct tacgaaaaag aatgcaactt ggaattggaa actaccacaa      2880
     caagaagcat ttgatcagct aaaagtgttg ctaagttcag ccccaatcct acgtcaagca      2940
     gatacgaagt taccatatat actacgcact gatgccagta gctatgctct gggagcatgt      3000
     ttactccagg gggagggcgc agacgaacga cctgttgaat acgcatcaag attgttaaca      3060
     accgctgaac agaactacac cactacagaa cgagaagctc ttgctattgt ttgggcaatc      3120
     cagaaatttc gcggatatgt agaaggagcc acaattcttg ttcagagcga tcaccaacca      3180
     ctacgatggc ttatgtcttt gaagacccca accggacgac ttgctcgttg ggctttgagc      3240
     ttacaagcgt tcgatttaca tatagattac ataactggaa agaagaatgt aattgccgac      3300
     accctgtcca gacctgttct tgacgagtca cctgattcca tcaacatgat tagtgttgat      3360
     atgcctagta aacccgctag tgacgttaga gctgaacaac tagaagatcc agagcttcgt      3420
     aaaatcatta ctgacctaga atcctccgcc actagtactg acttcaagaa atgggctgaa      3480
     cgtggatata taatgtcaaa cggaattcta tttcgttata atccagatat tgacgaagaa      3540
     gaaccgcaac aagtaatacc ctctagccaa attcctcata tcttacggga ataccatgat      3600
     ttggaaaccg caggacacta tggtattgaa cgtacttacc aacgcattgc acgaagatac      3660
     tattggatgg gaatgagaag aaacataacc gattatgttg gacaatgtat cgaatgcaaa      3720
     aggtataaac caaccaactt aaaacctgct ggtctcttac aaactccgat acaagcacaa      3780
     agatttgaag ttatttccat agaccttttt ggtcctctgc cagaaactcc tgatggatat      3840
     cgttggatct ttattgttga agacaccgca agtagatgga ctgaattgtt cccattaaaa      3900
     actgctacag ctgaggcatg tgcacgctgc ctgaccgatg aaataattct tagatatgga      3960
     gtgcccagga gaattattag cgacaatgga gtacaattcg taggctctat tatgcaacaa      4020
     ttagcccact gtttaggatt taaacaatgt ttaacacctg tctaccaccc agaatccaat      4080
     cctgtcgaaa gaaagaacag agatctaaaa acgcaattag ctatacttac ctcagatgat      4140
     catacatcat ggatagacaa attacctgct gtaagatttt ccatgaatac cgtaaaatgc      4200
     caatccactg gatacacagc agcttttctc acatttggac gtgaattaag gaccccagat      4260
     gacgtaaacc gtgatatgcg agttatagtc caaaccgaca attttgtacc gcaaatcacg      4320
     ccttatctac ttaccttaag taatactctg cacgaagcac gagaaaacca tgagaagaac      4380
     caagatcgac gcactaatat aaagaatgaa catagacgac cttataatta ctcagttgga      4440
     gataaagtat tagtgaccac tcatgttctc agcaaagcaa gcaaccaatt cacatcgaag      4500
     tttgctccac gacgtgatgg cccttacttg attcagaaga tagtgagccc taccacatat      4560
     atccttagtt ccacggataa accggatcaa ccactgggaa agtatcacac ctcagcattg      4620
     accccatacc agatctcgga agaaagaaac cttagccctc ttcaaccttt acgtaatcga      4680
     ggcagaccac cgaagctgag ttccgacagt tcccacaccc cgaaggacac aacgattcct      4740
     caaaatgatt ctgactccgt agaacaaacc ccgacatcag ccgaagatcc ctttccggcc      4800
     atccaaccga aatatcaccc tagaaagaag atccagaaga aatgcatctg ttgctccacc      4860
     cgcgaggacg ccagtgtggt gcaaaggggg agaa                                  4894
//
ID   Gypsy-21_SiOr-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-236
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 390-390 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 236 BP; 81 A; 42 C; 49 G; 63 T; 1 other;
     tgtaacacag aactattata tagcgcccct cttggaccgg accgatcgga cgagtccatt        60
     atcamgagag cgagggacag taggaagaag aataacatat gatgagtatc ttaagtagtg       120
     tgaaagtatt gtcacgtaaa gtttattaat aaaagtgttt gttaaattct tcgagttttg       180
     tcacaaaatt tatggttcga caccccacaa aataaatgta acggaacccc gtcaca           236
//
ID   Gypsy-21_SpEx-I repbase;    DNA;    INV; 5240 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5240
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4090-4090 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1244..5098
FT                 /product="Gypsy-21_SpEx-I_1p"
FT                 /translation="MSNQLPPPEKLILEGDSSSMGLKWEKWKRSLLIYLEA
FT                 SDINNDVKKRATLLVLGGSTLQDIFYNLPGANVNPENEVNVFDVAIRKLDD
FT                 YFLPKQNKTYERHLFRQITQVEGETFEQFLLKLRDQAAKCKFDKPDDQIID
FT                 QITGCCLSSELRKKILTMGDEITLDKVISAANTLEIVNHQLESYEKKDKIK
FT                 TNEINAIKTTYKNNSRWETQNRQSSKCGRCGHAAHTSHGSVCPALRKKCNG
FT                 CGKLGHYQRCCRTKSNQLKRKTEQKQDSDKNNHKRQKQDSTVNSLEEEQVE
FT                 YIFNLNDDATIRCEIGGVSLEMLIDSGCKLNLISDKTWDYLKRNKVHCYKQ
FT                 VREPNKIFFAYGSKTPLQVNGSFEAIIKANSKEDQAKIYVIGDGSRNLLGK
FT                 DTAIRLGVLKLGVSVNQINCSQVKSQPFPKFKNVSIEIPIDPLVKPVMQPF
FT                 RRIPIPIEEKINKKIKELLDSDIIEEVHEPSPWVSPIVPILKDNGDVRVCV
FT                 DMRRANAAILRENHPLPCMEHLLPKISKAKYFSKLDIKDAFHQIELHPNSR
FT                 HLTTFITSNGLYRYKRLMFGVTCAPELFQKILEKLLIKCQGVTNFIDDILV
FT                 WGKDKEEHDLRLAEVLKILKDNDVLLNQAKCIYSVQQIHFLGHVLSPDGVK
FT                 PLPKYIKSISEFRVPDTIEELQSFLGLVNYINKWIPNMATMTEPLKELLRK
FT                 KLGKKASIKEYWKEDQETAFIELKKALSEIKTLGYYDVMDKTQVIADASPV
FT                 GLGAVLVQTDNKGPRIIAFGNRTLNDCERKYSQTEKEALALVWAIEHFNTF
FT                 LFGKVFDLITDHKPLEFIFGPKSRPCARVERWVLRLQAYRYNIKYKPGKTN
FT                 IADPLSRLCESAPKQALVKDYVHQIAELARPQAIPMAEIIDESKTDHEISQ
FT                 VRKGIYNDQWDDSVKCFKIFANELCFYENILLRASRIVIPVNLRPRVLHAA
FT                 HEGHPGIVGMKGRLRSKVWWPRIDKDVELFVKNCKGCTLVSLPNPPVPMKR
FT                 RELPAEAWMDIAMDLLGPLPNGDYLLVVVDYYSRYKEIKITRTTTSLQIIK
FT                 ILKEMFSRLGYPDSITADNGRQFISEEFKNFCRECNIRLYNTVPYWPQMNG
FT                 EVERQNRDILKRLKISSSEKKDLREALYEYLMMYNSTPHSVTGKMPSELFF
FT                 KRKNRDKIPMLKQIRESDDSEVRDKDKLQKEKGKEYSDRKRRAEEPGICQG
FT                 DKVYLKEIEKTNKLSTNFNPESHVVEKLVGGDITVRNEETGQKLRRNIVHL
FT                 KKVEGQWQSVPNDLIPAEDCVVDE"
XX
SQ   Sequence 5240 BP; 1919 A; 771 C; 1026 G; 1524 T; 0 other;
     agtggcgacg aggaaaaaaa ggtcagaaaa aaaaaatttt tttttggcgg gaaaggtggc        60
     ttgtttaatt attttgtcga aataacataa aaaaaaccca aacgatttgt gatttcatac       120
     tattatacta gaaaaaggta attaaaaatt aattaaacgt attttatcaa taataattat       180
     gtcacaaaat tggtaataag agactagaaa tagttttgtt ttgtacttat acatgcgagc       240
     tggagacgat aatttattaa tataaaaatt tcatattttc ccgcgctgcg gcctggcgcc       300
     tgccgcgtaa atgaaagtaa ataaacaggc gattaattaa gttttctact attaattaca       360
     aatctagacg gcttatatgt atataggtgc tattttcaat attttacata ttgcaaacaa       420
     ataatcttaa aataacgttt actcaaagat tttgtctgat tgtacgtagt ctttaaatga       480
     tatttcataa tgtaggtata atagatagtt atttgtttat tttaaaaggt gacgtaggct       540
     acatattttt agttattgtt tgtttctaat tactttacaa aagtttttca ttagttttaa       600
     aattcgttta agttacctgc atacaacgat ttgcataggt aggtaggtac gctaacaata       660
     ggatatgcca tatttttccc cgcctaacta tataacagag taaaactaaa attagttagg       720
     tacctatgat aaaatttcat taaattgaaa tgaaaaactt cggaattcca ttaaattggg       780
     attgaggtta aaactttgga attccatagc ttggaattaa aacaaagaat ttgaaagtca       840
     atagtcgtcg gtattccatt taactggaat taagatatgc cttcggaatt ccatttaatt       900
     ggaattaagg tcaaaacttt ggaattccat ttaattggaa ttaaggttaa aactttggaa       960
     ttccattaga ttggaattaa taaagaattt gaaattcaat agtcatcgga attccattta      1020
     attggaatcg gaataaacct gcggaattcc attaaattgg aatcagaaaa ttatattttt      1080
     ataaggactt cgggattcca tttaattgga attgcgactt ggatggactt cttctaaata      1140
     agaacttata ggttaaagaa gacaaaagac ttgcattatt gtgaaaaagt gttatttcca      1200
     ttcaattgat gtttttccag gtcgtctcaa ataacgatcc atcatgtcga atcagctacc      1260
     gcctccagag aaattaatcc ttgaaggtga tagttcttct atgggattaa aatgggagaa      1320
     atggaagagg tcacttctta tttaccttga agcatctgac attaataatg acgttaaaaa      1380
     gagagcaacg ttattagtat taggtggatc tacacttcaa gacatatttt ataacttgcc      1440
     aggagctaat gttaatcctg aaaatgaagt caatgttttt gatgtagcta ttcgtaagct      1500
     agatgattac tttcttccta aacaaaataa gacttatgaa agacacctat ttcgacaaat      1560
     aacgcaagta gaaggtgaaa cttttgaaca atttttgctt aaacttcgag atcaagcagc      1620
     caaatgtaag tttgacaagc cagatgatca gattattgac caaataactg gatgctgtct      1680
     atcttcagaa ttaagaaaga agattctcac tatgggggat gagattacat tagataaagt      1740
     aatatcagct gcaaatacac tagaaatagt taaccaccaa ttagaaagct atgaaaaaaa      1800
     agataaaata aaaacaaatg agataaacgc gataaaaact acatacaaga ataattccag      1860
     atgggagact caaaacagac aatcaagtaa gtgcggtaga tgtggccatg cagcacatac      1920
     ttctcatgga tcggtctgtc cagctttgag gaagaagtgt aatggttgtg gaaaattagg      1980
     ccactatcaa cgctgctgtc gaactaaatc taatcaatta aaacgcaaaa cggaacaaaa      2040
     acaggactcg gataaaaata accataaaag acaaaaacaa gattcaacgg ttaattcttt      2100
     agaagaagag caggtagagt atatatttaa cttaaacgat gatgcaacaa taagatgtga      2160
     aataggaggt gtaagtttgg aaatgttaat agattcgggt tgcaaattga atttaatatc      2220
     ggataaaact tgggattact tgaaacgaaa caaggtacat tgttataagc aggtccgaga      2280
     accgaataaa atatttttcg catatggcag taagactcca ttacaggtca atgggtcgtt      2340
     tgaagctata ataaaagcta acagtaaaga agatcaggct aaaatttatg tcataggaga      2400
     tggatcaaga aatcttctgg gaaaggacac tgccatacgt cttggagttt taaaattagg      2460
     ggtcagtgtg aaccaaataa attgtagtca agtaaaatct caaccattcc ctaaatttaa      2520
     aaatgtctca atagaaattc ctatagatcc gttagttaaa cctgttatgc aaccatttcg      2580
     aagaatacct atacctatcg aagaaaaaat aaataagaaa ataaaagaat tacttgattc      2640
     agacattatc gaggaagtac acgaaccgtc accctgggtt tctcctattg tacctattct      2700
     aaaggataat ggcgatgtgc gcgtctgtgt tgacatgcgg cgtgcgaatg cagctatatt      2760
     aagagaaaac catcctttac cgtgcatgga acatttgttg ccgaaaataa gcaaagcaaa      2820
     gtatttttca aaattggata tcaaggacgc atttcaccaa atagaattac atccaaattc      2880
     caggcattta actacattta ttacttctaa tgggctctat cgatataaaa gacttatgtt      2940
     tggggtgact tgcgcccctg aactttttca aaaaattcta gagaaattat tgattaaatg      3000
     ccaaggagta acgaatttca ttgatgacat tctggtctgg ggtaaagata aagaagaaca      3060
     tgatttacga ttggccgaag tcttgaaaat attaaaagat aacgatgtcc tgcttaatca      3120
     agctaaatgt atatattcag tacagcaaat acacttctta ggccatgttt taagtccgga      3180
     tggagtaaag ccactaccca aatatataaa gagtatatca gagtttagag ttccagatac      3240
     gattgaagaa ttacagagtt ttctcggact agtaaattac ataaacaaat ggatacctaa      3300
     catggcaact atgaccgaac cacttaaaga gctattgaga aagaaactag gaaagaaggc      3360
     cagtataaaa gaatattgga aggaagatca agaaacagca ttcatagagt taaagaaagc      3420
     attatcagaa attaaaactc taggttatta tgacgttatg gataagacac aagttatagc      3480
     agacgctagc ccggtagggt tgggtgcggt tttggtgcaa accgataata aaggacctag      3540
     aattattgcg ttcggtaatc gtacattaaa tgactgtgag agaaaatata gccaaacgga      3600
     aaaagaagcg cttgcactcg tttgggctat agagcatttt aatacatttc tttttggtaa      3660
     agtgtttgat ttgattactg atcataagcc ccttgaattt atatttggcc ctaaatctag      3720
     accatgcgct agagtcgaga gatgggtgtt gcggcttcag gcttatcgtt ataatataaa      3780
     atataaacca gggaaaacca acattgccga tcctttatca cgattgtgtg agagtgcgcc      3840
     caaacaagcg ttggtaaaag actatgttca tcaaatagcg gaacttgcaa gacctcaagc      3900
     aattcccatg gccgaaataa ttgatgaatc aaagactgat cacgaaatca gtcaggttag      3960
     gaaaggaatt tataacgacc aatgggatga ctctgttaaa tgttttaaga tcttcgcaaa      4020
     tgaattatgc ttctatgaaa atattcttct tagggcgagc agaattgtca ttccagtgaa      4080
     tctaaggcca cgtgtattac atgcggcaca tgaaggccat ccaggaatcg tgggtatgaa      4140
     aggccgacta agaagtaagg tttggtggcc caggatcgat aaagatgttg agttgttcgt      4200
     aaaaaattgc aagggatgta cacttgttag tctcccaaat cctccagtac caatgaagcg      4260
     tcgggaactt ccagccgagg cgtggatgga cattgctatg gacttgttag ggccattacc      4320
     aaatggcgat tatcttttag tggtagttga ctattatagt cggtacaaag agattaagat      4380
     cactaggacc actaccagtt tacaaattat taaaatatta aaagaaatgt ttagcagatt      4440
     aggttatccg gattccatca ccgctgataa cgggcgacaa tttattagcg aagagtttaa      4500
     gaatttttgt agagaatgca acattagact ttataataca gtaccatact ggccacaaat      4560
     gaatggcgaa gtagagcgcc aaaaccgaga tattcttaaa cgacttaaga ttagttcaag      4620
     cgagaaaaaa gatctcagag aagcgctcta tgagtattta atgatgtata attctacccc      4680
     tcattcagtg accggaaaga tgccatcaga actgtttttt aagagaaaga accgcgataa      4740
     aattcctatg ttgaaacaga tacgtgaatc agatgattcg gaagttaggg ataaagacaa      4800
     attgcaaaaa gagaagggaa aggaatatag tgatcggaag agaagagcag aggagccagg      4860
     tatatgtcaa ggggataagg tttatttgaa agaaatagaa aagacaaata agctttcaac      4920
     taattttaat cccgaatctc acgtagttga gaaattggtt ggaggagaca ttacagtaag      4980
     aaatgaagaa acaggacaga aacttagaag aaatattgtg cacttaaaaa aagtagaagg      5040
     tcagtggcaa agtgttccaa atgatctcat cccagcagaa gattgtgtag ttgatgagta      5100
     ggttctccaa agacatagtt ctgagatgta atttgatatt ttttctatta gttattaagt      5160
     aataattaac tgattttaga taagtaataa ttgttttaaa ttttttaatt cgataataaa      5220
     aattgttaaa aaggaaggga                                                  5240
//
ID   Gypsy-21_SpEx-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-197
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4150-4150 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 197 BP; 50 A; 38 C; 46 G; 63 T; 0 other;
     tgtagtgttt gtatctccaa aaaggtcata ctaacattgt ctcatgtaca ctagtagtcg        60
     aagtatagct gtcaatctgt cacttctgtc agtctgtcac tgacactggt taaggttgga       120
     ctagtgctgc ttgcgataca agtgtagtgg tgagccagtg cattaccggt tttactgtaa       180
     agacaagggt ccttaca                                                      197
//
ID   Gypsy-21_SpFr-I repbase;    DNA;    INV; 5160 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5160
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1856-1856 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5160 BP; 1710 A; 865 C; 1024 G; 1561 T; 0 other;
     tattattgtt ttataattgt tctgtaaata taaattgtaa ttcctgaaag ttatgaattt        60
     catttaatcg tcttgcatct tgaaataaca cttcagaagt gggatctttt caaattgtct       120
     ggaccttaca tcggtggatt ggggaaagga caaagaaagt acaagacaga aagttcggaa       180
     gatgaaaaca atggaatttt tttttttcgg aagaccatga accacgcacg aaatgtagca       240
     tctacggtga aaatacaatt tcatgtataa ttcgagatga gggccaatgc aaaggcatag       300
     ttgtgaaact cccgaacaac tgtaccatgg ctacatgtcg tcactggaga acctgatacc       360
     cgtgggttca actagtacac gcagaacttc attgtgccca atggaacttc gactgttcaa       420
     caatagccca agatttacta cgtttgccgg cgtcctggac acgaagcaaa ggattgcaga       480
     caacgacagc gctgcgagaa ctgtcggcgc agcggacaca ccacggctac gtgctggttt       540
     gctccgagtt cttcacacct agcgacaaaa tgttacccag gtaatgctaa cttataactt       600
     atgacatatt tgtgacattt ataagagaat tgtgatcgta aataattgcc agatcattag       660
     cagcgtacgt tgatacaaac tgaataatat gctttaaatt ttgcgagcaa aagatttaca       720
     attagagatt caatctagca ctacagttat gaaaggtttt ggcggcgcct gtgtgaattt       780
     attatgtacg tgttatctgt gtgtttcaat agacaatgtc gaactaaaaa gtgcagtaga       840
     attgactagc tgttttacat ttgatgctga tttaataatt ggtcaaacaa tgattaatag       900
     tgacaatata agcttaataa cttctgctgc ttctattcgt tttgtgcaaa agaatgccgt       960
     acaagaaata attactgaca ttaatttgaa atcatccgac tttaatagaa aatacccaat      1020
     ttatttaaag cactccgtaa atatccctgt tgtaatatta tgttgattgt gatatagaat      1080
     tacgagcaga gttcacattt tttattgaac tgtatgggtg caaatagtga cttaatatac      1140
     ctaacgtatt tcatacctgc agctgtcatc aaatcgcaca atacttattt gaaaattctt      1200
     aacttaggta atgttaatct gtcgtgggtg gggcgttgat aataattagt aaccatgcca      1260
     gagacgagta gtgagcctgt ggtccttaat atagacaagt atcagacagt tagattacaa      1320
     attgatctct cagacacaaa cgtggaccaa attagtgaca ctgagaataa gcaatgacta      1380
     cagctgctct aattcgtttg ctaaaaatat tagagactag ctactttcgc acggtttcac      1440
     ccgctctgct cggcttctat tggtcatagc gtgatgtttt atagcctata gccttcctcg      1500
     ataaatgcac tacccaacac aaaaagaatt attcaattcg aaccagtagt tccggagatt      1560
     agcgcgttca aacaaacaaa caaacaatca aacaaacaaa ctcttcagct ttataatatt      1620
     atagtataga ttagtataga tagatttagg atgcacagac cttataaaaa tgcatattcg      1680
     tagttcgtac tagtaatgac cagccagtac attgtaagcc ttatacacgg tgtaacaaaa      1740
     aggggggtat acatatcaag tgcacggttt ctagacaaca taaaaaaaaa aacatatggg      1800
     aaggtttttt ttaaacttat gttttcctgg aacgtagtta tgaatttttc caatacataa      1860
     aattccaaaa accgaatatc agaattaggt agatacaggt actaggcgat cagatttaca      1920
     gaataaatgt ttcgtaatta gcgagtgacc cctgtgatgt tgtgatacgt tagtatgatg      1980
     attttaaatc aagaaccatg cgacaccaag tatttggtac caattttttt taaatgtatt      2040
     ttaagctgaa actttgtgta gagattataa ttattcaacc agtattcttc agtgcttctt      2100
     gatgtatatg ggtattttgt tacacgctgt agatttcaca aggagaacga aatagtaaat      2160
     aatttaaaaa aaatattaga tgcaggtata ataagggagt caatgttaca ttactctagt      2220
     cccgtagtgt gttagtgtta gtgaagaaaa agggaggtga tcataggctt tgtgtagact      2280
     atagggctct taattccaac actattaaga ccgttatcca ttacctcata tagtagataa      2340
     agtaaataag ctgtcgggaa aatattactt tacgacacta gatttagccc aaagcaactg      2400
     ccaagtaggg atgcataagg attcaacaca taatgcaatc gcattcgtaa ctctgtcgag      2460
     tcaatatgaa tttcttaaga tgccgtttgg attggctaat gcctcggtta tattttcccg      2520
     tttaattcaa atgacacttg gtagagtaga tcaaaatatt gccctatatc ttgatgacgt      2580
     tttggtgcca actgtatctg tacaggaggg attaaagttt ctggaaaaat actgcaacta      2640
     ctaacaaagg ttaatttaaa attgaacctg agcaaatgtt ctttccttaa aagtactgct      2700
     tacatattta ggtcacgcaa tttcggctgg aactattcaa ccaggcgaag ctaaagtcaa      2760
     atgtgtcgca agatatagtc caccacggaa tgtacacgaa attaggcagt ttatagggtc      2820
     aacccggtac tttaggaaat aaaaaaaatt gcttaggttg cacgtcccct tacagaactg      2880
     actaagaaag atgttaattg gcattgggat gttgatcatg aaaaggcttt tcaaactctt      2940
     aagcaacgtt taattttatt gaaagaccgg ttttagccag aagctaatac tgaattacat      3000
     acagacgcca gtataataag cttgggcggt atactaatgc aatatcagtc agatgacagt      3060
     ttgaaaccaa tagcgtattt cagtagagtg acaagtaaag aggaatctaa ctatcatagt      3120
     tttgaacttg aaacactagc cgtcgtagag tcccttaaac gtttccgtgt ctatttaatt      3180
     ggtatactag tcaaggtcat tacggactgt tcagtattga gaactaccat tattaaaaag      3240
     gatttaatcc ctcgtattgc tcgacagtgg ctcccgatcc aagattacaa cttagagatt      3300
     gagtacaggc caggtaatcg catgagacat acagacgcat taaatagaaa tcccatacca      3360
     aatacctacc tacagtgcta atgattaata attcaaattg gttagttact cttcaatttt      3420
     tcttgataat atccaaaatg atactaggca tcgcgataat agtgattgta acttgactgc      3480
     aaattatatc gttaaagatg ggatcttatt taggaaaact gttgctggag aacgttaagc      3540
     ttgccaaata tgggctattg cagaaactac atgatcagat aggtcatcca ggacttgaga      3600
     aatgtgaaca atttatttat taaagggcat ttctggttcg aaggcatggc taagtttatt      3660
     tgaaaatact ttaattcatg tttacaatgt gcttttaata agagaaatta tgggaggtta      3720
     cacgatgagc tccatctatt tgagaaatct acaataccta tgcacacgat ccatgccgac      3780
     cacgtgggtc ctttcattaa acgcagacgc ttttaataaa ttcgtggttg cccgacctgc      3840
     taaaaattgt agctcagtag aaacaattag acttcttctt aaattatcat acagtttggc      3900
     tatccggtta gagttatcac tgacagaggt taagttttta ctagtaggta tttcaaacag      3960
     ttccctgaag aaaaccaatt taaacatgtt ttaaatgtta taggcagccc caaactctgc      4020
     tgatttggtg ttatcagaaa tatttcagct aaaagtccat ccattaaaat ttaaatcacg      4080
     ttattcagtc tttcttcgta aagaaattgt tctgtgtgaa tgagtaggta gtcttttgat      4140
     ctaattcagt caacattgga aaaaataact gggtgctagt cctaagctaa aataatatct      4200
     gctggattaa aaggacagct gtgtgatcaa gtccatgatt aaaaggacag ctgtgtgatc      4260
     aagtccatta ttaaaaggac agctgtgtga tcaagtccat tattaaaagg acagctgtgt      4320
     gatcaagtcc attattaaaa ggacagctgt gtgatcaagt ccgtgattaa aaggacagct      4380
     gtgtgatcaa gtccattatt aaaaggacag ctgtgtgatc aagtccataa ttaaaaggac      4440
     agctgtgtga tcaagtccat tattaaaagg atagctgtgt gatcaagtcc gtgattaaaa      4500
     ggacagctgt gtgatcaagt ccattattaa aaggatagct gtgtgatcaa gtccgtgatt      4560
     aaaaggacag ctgtgtgatc aagtccatta ttaaaaggat agctgtgtga tcaagtccgt      4620
     gattaaaagg acagctgtgt gatcaagtcc attataaaaa ggatagctgt gtgatcaatt      4680
     ccgtgattaa aaggacagct gtgtgatcaa gtccattatt aaaaggacag ctgtgtgatc      4740
     aagtccatga ttaaaaggac agctgtgtga tcaagtccat tattaaaagg atagctgtgt      4800
     gatcaagtcc gtgattaaaa ggacagctgt gtgatcaagt ccattactaa aaggacagct      4860
     gtgtgaccaa gtccgtgatt aaaaggacaa ctgtgtgaac aagtccttga ttaaaagact      4920
     gctgtgtggt caagttcttg attaaaagaa tggctatgtg aacactgtcc gctgcattaa      4980
     agtgatttga tttagatagc tgtattgtat gtaaaatgta atttaccagg ttggcctctt      5040
     aaactattag tacgatatac aatagatact gctggatgtt ttatttgttt cagaaatttg      5100
     catctgcaaa cggaaatcac agcgaagacc gtgggacacg ttctgcacag gatggccgag      5160
//
ID   Gypsy-21_SpFr-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-327
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1874-1874 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 327 BP; 129 A; 35 C; 48 G; 115 T; 0 other;
     tgttaacaac cactagcaac accagacaga tataatgtag gatggaatta taatataaaa        60
     aggatagtat ttaattactg agtactattc ataggaataa atatattaaa cctctttcat       120
     catttcatag acaatataaa ttgtttaaaa ataattgtta gctgaaatgg aacgtcaaat       180
     gatatattta aaaatggcgg gaaataatta attcgaatat tggtcgatga gacggattat       240
     tattgtttta taattgttct gtaaatataa attgtaattc ctgaaagtta tgaatttcat       300
     ttaatcgtct tgcatcttga aataaca                                           327
//
ID   Gypsy-21_TrNi-I repbase;    DNA;    INV; 4358 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4358
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 224-224 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..1018
FT                 /product="Gypsy-21_TrNi-I_1p"
FT                 /translation="MAESAQKEKMKSTGIMGLKPPTGLKNLSMEEYKKFMQ
FT                 RFEIYRLASGAKNETSEVQTALLLHCMGEEAQDIHATFDFEENEAYNYEKV
FT                 IKKFNEYFIPRKNESVNSHLFFTRNQKENETFDSFFTDIKKLSVECEFGNL
FT                 SDRMLRDKIVTGIIDKRLKDRLLRESDLTLSKAIQICKAAELAEEQVKKIA
FT                 NEPGMSNAVQSIKKKNVNQDKNKKRDGQKEKKFDCSRCGFQHSERKCPAYG
FT                 KKCKKCGKMNHFARKCRARDAVKAVQESESSDSESCDIILLILVMLIQKET
FT                 GMSMYTSPS"
FT   CDS           1128..4088
FT                 /product="Gypsy-21_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IDHYSNEKIETLGKIKLAVKINNKIQKIELQVCKGNY
FT                 VPILGLPTLIKFNLIQRTNNETVDSIQAKNLDLLEKYKDVFMGIGEIKNYE
FT                 YDIQLKEGWQGKIERNRHIPFKLKDKLKEELNKLEKLGIISKTEGPTDFVS
FT                 SLVMTTKPDGAMRICLDPQYLNTQIKREQMMIPNVDEIIAKLKGSNYFSTL
FT                 DANKGFWMIKLSNNSKNLTTFNTPFGRFHFNRLPFGLASSPEVFHRVFSEI
FT                 FKDIDGVELYIDDILIHSKTEAEHDRILEQVLKKAQEYNIKFNRKKCNFKK
FT                 KEVKYLGHVLTTEGIKVDQNRIKAIVEMKEPKTQKELLRFLGMINYVARFI
FT                 PNVSEVTAPLRQLIKKDVPFVWSTEQDKAYKNVKKLLIEPPVLSYFDMSKH
FT                 IILSVDASKAGLGSVILQEGKPIAYGSRAMTETEKQYSQIEKECLAILYGV
FT                 TKFHQYLYGSQFKVETDHKPLVAIFSKPLNRCPARLQKMRMALQPYSFELN
FT                 YKPGKELLVADHLSRSHLSETEENSDLKVETHVAMIMESFRISDEKLNELV
FT                 LETAKDEELMAVNKYILEGWPENKSLIDSKAKIFYSYRDELSNIRGLIVKG
FT                 RNIVIPQSKRKEILEKIHYAHLGIEKTKVLARNSVFWPNMNKEIEDLIQNC
FT                 DTCKSFQNVNRKESMIEKEVPRKPWEILSIDIFFLYSKPYILIVDAYSKYV
FT                 EIQPLNNLYATSTIDSIKEILARHGIPYIVYTDAGTQFSSCEFKTFXKEWN
FT                 FKHKIVSPKHHQGNGLAERYIQTVKKLLKKLIYDKKDIYLGLLMYRNTPVT
FT                 TDGKSPSELLFNRNIKTILPKLDLQQDRKDKHKQELLNKQEIQKKYYNKGS
FT                 RDLPELKEGEIVKIQDENGKKPHESGVVIRKGSGPRSYQVRNESGNILTRN
FT                 RKMLIKGGKYHDRSRVVDQGDCEVSERQEVERQKIQGHDIQTNVTPRDRDS
FT                 SGQVISNNDASSSRASRSGRLIKRPGYLKDFV"
XX
SQ   Sequence 4358 BP; 1824 A; 493 C; 844 G; 1194 T; 3 other;
     tggcgctgcg taatcgaaga aatcaggttc gtgacatatt caaatagata cgctgacgtg        60
     ttccgagttc tgcaagttgg ttgtacaaaa caaagacgca aagtgaaaca agaaaatggc       120
     ggagtctgca caaaaagaaa aaatgaaatc cactggaatt atgggactaa aaccccctac       180
     aggcttaaaa aacctatcta tggaggaata caaaaaattt atgcagagat ttgaaatata       240
     tagattagca tcaggagcca agaatgaaac tagcgaagtg caaacagcgt tacttttgca       300
     ttgtatgggt gaggaagccc aggacataca tgcaacattc gattttgagg aaaatgaggc       360
     gtacaactac gaaaaggtaa tcaagaaatt taatgaatat ttcataccaa gaaaaaatga       420
     aagtgtcaat tcacatttat tcttcaccag aaaccagaaa gaaaacgaaa catttgatag       480
     tttttttact gatataaaga agctaagcgt agaatgcgaa tttggaaatc tgtcagatag       540
     aatgctaaga gataagatag tcacaggaat tattgacaag agattaaaag acagactact       600
     tagagaaagc gacttgacac taagcaaagc aatacaaata tgtaaagcag cagaactagc       660
     ggaagaacaa gttaaaaaga ttgctaatga accaggaatg agtaatgcag tacagagtat       720
     taagaagaaa aatgtaaatc aagataagaa taagaaacga gacgggcaga aagaaaagaa       780
     gttcgactgt tcgaggtgcg gctttcaaca tagtgaaaga aaatgcccag cctacgggaa       840
     gaaatgcaag aaatgtggaa agatgaacca tttcgcaaga aaatgcagag caagagatgc       900
     agtaaaagct gttcaagaaa gtgagtccag cgatagtgag tcgtgtgata ttatattatt       960
     aatattagta atgttaattc agaaagaaac tggtatgagt atgtatactt caccgagttg      1020
     aataggaatt taaaattcaa attagattca ggtgcacaat gtaacgttat atctgcgaat      1080
     gattgttaca gatttggtat aagtaagttt gacaaaacca attgtaaatt gaccattata      1140
     gtaatgaaaa gatagaaact ttgggaaaga ttaaactagc agtaaaaata aataataaga      1200
     ttcagaaaat agaattgcaa gtttgtaaag ggaattatgt acctatttta ggtttgccta      1260
     ctttaataaa atttaattta attcagagaa caaataatga gacagttgat agtattcagg      1320
     ctaaaaatct agacttatta gagaaatata aagatgtttt catgggtata ggtgaaataa      1380
     aaaactatga gtatgatatt cagttaaaag aaggttggca aggcaaaatt gagaggaata      1440
     ggcacatacc gtttaaactg aaagataaat taaaggaaga attaaataaa ttagaaaaat      1500
     taggtataat aagtaagaca gaaggtccga cagattttgt aagttcatta gttatgacaa      1560
     ctaaaccaga tggagctatg agaatttgtt tagatccaca atatttaaat actcaaatta      1620
     aaagagaaca aatgatgata cctaatgttg atgaaataat agcaaagtta aagggaagta      1680
     attatttcag taccttagat gcaaataaag gcttttggat gataaaatta tcaaataata      1740
     gtaaaaactt aacaacattt aatacaccat ttggaagatt tcatttcaat aggttgcctt      1800
     ttggtttagc ttcaagtcca gaagtttttc acagagtatt tagtgaaata tttaaagata      1860
     ttgatggagt agaactttat atagatgata ttttgataca ttctaaaaca gaagctgaac      1920
     atgacagaat attagaacaa gtacttaaaa aagcacaaga atataatatt aaatttaata      1980
     ggaagaagtg taattttaaa aagaaagaag ttaagtacct aggacatgta ttaacaacag      2040
     aaggaattaa ggtagatcag aacagaataa aagctatagt agagatgaaa gaaccaaaaa      2100
     ctcagaaaga attattgagg tttttaggta tgattaatta tgttgcgaga tttattccca      2160
     atgtgtctga ggtaacagca ccattgaggc aattgattaa gaaagatgta ccttttgtat      2220
     ggtcaactga acaagataaa gcatataaga atgtgaagaa attattaatt gaaccacctg      2280
     ttttgagtta ttttgatatg agtaagcata ttatactgag tgttgatgct tccaaagcag      2340
     gattaggtag tgtcatatta caagaaggaa aacctatagc ttatggttct agggcaatga      2400
     cagaaactga aaaacaatac agtcagatcg agaaagaatg tttagcaatt ttatatggag      2460
     taactaagtt tcatcagtac ttgtatggaa gtcagttcaa agtagaaact gatcataaac      2520
     cgcttgtagc aattttttct aaaccactaa atagatgtcc agckagattg caaaaaatga      2580
     gaatggcttt acagccttat tcttttgagt taaattataa accaggtaaa gaactattag      2640
     tagcagatca tttgagtaga tcacatttat cagaaacaga agaaaattca gatttaaaag      2700
     tagaaacaca tgtagccatg attatggaaa gttttagaat atcagatgaa aaacttaacg      2760
     aattagtgtt agaaacagct aaagatgaag aattaatggc agtaaataaa tatatcttag      2820
     aaggatggcc agaaaataag tcattaatag atagtaaagc aaaaattttc tatagttacc      2880
     gagatgagtt gagtaatata agaggattaa ttgtaaaagg tagaaacata gtaataccac      2940
     aatcaaaaag aaaggaaata ttagagaaaa tacattatgc acacttaggc atagaaaaaa      3000
     ccaaggtatt agcaagaaat tcagtatttt ggccaaatat gaataaagag atagaagatt      3060
     tgatacaaaa ttgtgacaca tgtaaaagtt ttcagaatgt taataggaaa gaatcaatga      3120
     ttgagaaaga agttccaaga aaaccatggg aaatattgtc aatagatata ttttttctat      3180
     attcaaaacc atacatattg attgttgatg cttatagtaa gtatgtagaa atacaaccat      3240
     taaataattt atatgcaaca agtacaattg acagtattaa agaaatccta gcaagacatg      3300
     gtattccata tatagtttat acagatgcag gaactcaatt tagtagctgt gaatttaaaa      3360
     cttttkctaa agaatggaat tttaaacata agatagtaag tccaaaacat caccaaggga      3420
     atggattagc agaaagatac atacaaactg ttaagaaatt gttaaaaaag ctaatttatg      3480
     ataagaaaga catttactta ggtttgttaa tgtatagaaa cactcctgta acaacagatg      3540
     ggaaatcacc ttcagaattg ttattcaata gaaacattaa gacaattttg ccaaaattag      3600
     atttacaaca ggataggaag gacaaacata aacaagaact tttaaataaa caggaaattc      3660
     agaaaaaata ctataataaa ggaagtagag acttaccaga gttgaaagaa ggagaaattg      3720
     ttaaaataca ggatgagaat ggtaagaaac ctcatgagag tggagtagtg ataaggaaag      3780
     gtagtggacc tagatcgtac caagtaagaa atgagtcggg aaatatttta actaggaata      3840
     ggaaaatgtt gattaaagga ggaaaatatc atgataggag cagggtagta gatcaaggag      3900
     attgtgaagt tagtgagaga caagaagtag agaggcaaaa gattcaagga catgacatac      3960
     aaactaatgt gacacctaga gatagggatt cttcagggca agttatttct aataatgatg      4020
     catcgagtag tagagcatcc agatcaggta gattgattaa aagaccaggt tatcttaaag      4080
     attttgttta attaataagt tgatacatca gtaagatcta catgattaat aagaatttaa      4140
     ttaataatta agaagtttgt attttcatat gattgattgt aactwagaaa aaataagagt      4200
     cttcatcact tgtgaattta atagttaact tcagtaagaa attgttatta attatctagc      4260
     ttggaagtaa cttgatttgt aaacttaaat gttcttatag taaatgtata agtcagtagt      4320
     tcagtataat ctcaagtaaa taatgtaaaa gggaagga                              4358
//
ID   Gypsy-21_TrNi-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-215
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 178-178 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 215 BP; 80 A; 23 C; 38 G; 73 T; 1 other;
     tgttatatgg ttagtcgaat attgagtatc gaktattatg gttcatagtc tatggtagaa        60
     tagtaacctc cctagattaa atagagtggt tagttgatga caatggaata agagagcatt       120
     accttgtacc tgtgtatcta acaatttgaa tattaaaata aacctgttga agacttataa       180
     aagatgttta attattaata aaagacatca taaca                                  215
//
ID   Gypsy-21_TrVa-I repbase;    DNA;    INV; 8016 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8016
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 266-266 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           933..2162
FT                 /product="Gypsy-21_TrVa-I_1p"
FT                 /translation="MNSPVSNHTRNFRERRPVMGERLDLGEGERVPEGNVG
FT                 VPEDNLPQGAVGPVVEGQNVQNIQNILLTPPGVPPAPLVRFQPFQQQNQVR
FT                 NDQLPSDMLPAHSALRPDRPLVDTPSDPNLNVVLSRLMQKIENLELAVHSN
FT                 PQTNQAIKMEQPMLSQISSQAVAVPNNLGPYPQESSKPTYQNTRRFHELPT
FT                 FDGTKYSPHPKDFLNEVEDFFEQFCVSDEVKLKEVGRLLRDDARSWYQVYR
FT                 VSFRSFTDFKSAFLEFYWGPQMQNSARLSLLAPGRSPPGHGQLAPYFLHQL
FT                 RAMNYLDDTPSDSFKIASIIQSFPYDVKLAITQFNATNIDAVLQILKSFDH
FT                 LGPRPSSDLQVVPFQNQQVQNVNNNSRANPRVNFLSIEHAPGADHGEQPQI
FT                 LDSASAAPQPGYQPLN"
FT   CDS           2093..6715
FT                 /product="Gypsy-21_TrVa-I_2p"
FT                 /note="retropepsin, SGNH_hydrolase, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="SRGAATDFGFCICGAPARLPTFKLIWSEPNTGESLAP
FT                 VCITKVVTPDNVNYFDSYYMYHLRMEFSDVGKAEGECILFYPVFYPSLPMT
FT                 LYLNNCTIGATLAYKLHAPTIQKLFQHVSHFKANNYSAVLAIVPFEMLSDL
FT                 VGGTQGWRGLIQNTGAKPIFLCGTPVRPNSPEFQTLEIMHQNFSSQSASNN
FT                 KISILVPEKILTSRDFDEQDVLSLTGLARILQHFATKFRNKLLAKHFENEI
FT                 VCNSFTTFLDNEKHFLLDESNGQPQFNKRLKSPVVSLRIDSHQVSVLIDTG
FT                 SEITLISLELFEELKSVTGLPFPTLPVTNIAIKGITGVRSKSVTFQTYIDL
FT                 KFNETCFPTPILVVPSVNIPFIVGIDFLRKNKAIINCAEETLELCDGMIKL
FT                 PWMNFDSPEKTLPVNTCSVQPINRIFLLTDSHGRDLSDLLKSFLPKNTQIE
FT                 ARVKPGFQFDSVTQPLSSLCVTSDTVVIIAGTNNLAKFKTLPEILDSFNLL
FT                 PLKKFKGKIVMCEIFPRYDWKDSHSQSTPVNLFLKNKLRKYKHVNFLKTLG
FT                 QLQRKHFTRQGLHLNLSGKKELAQLIARKVEALKTLDSTATPEFEGSPRVY
FT                 STEVTRVLSFTNLWLSEVPAFPIHIFSVHNVVPTVSDLTYEEVLAKINPLN
FT                 LNNDQKTQLLSLIENNRDVFSDKPGLCTTFTAKLRLKNKEPFVLRSRPIPF
FT                 YLKERVRAEVQRMLDLGLIERSSSPFSNPIVPVVKEDDSIRLCLDARKLNE
FT                 RLVFDAEAPESIESLLNKFSNPQYMSKLDCTNSFLQLSLEPESREFVSFVF
FT                 EGKNYQFGRLPFGLCVSMQIFLKATETIFGPETADFLAKYVDDFKIVSQTF
FT                 PLHLEHLQIILSDLRAAGMTLKFAKCLFLQESTDFVGYILSRDGIRKDPKT
FT                 TRAISEFPQITNKKTLQSFLGLINFYSKFHNNHAKMTVPLHHLLKKDAPWS
FT                 WGPDEEKTVSEIKRVFIEDVVLSYPDFAKSFYLNTDGSYSAVAGELFQMDK
FT                 EGYRRPICYYSRTLTASEKNYTVTEIELLAIVASLNKFRQFTLGHKVIVLT
FT                 DHSALTFLRSCVLSSGRLVRWSLFLQQYNLEIQHIKGSENTALDILSRYTP
FT                 EFHQLPTNNVDINVSAVKTFAPKLNSKNFAKISEWTLLDPRLGKIHKELTE
FT                 NKDSPSKNLYTILNNNLFFKDPKSGNCILCIPQKLESEIIFATHEYLGHLG
FT                 SNKVYQYLKRIAIFPKMQPKIRQLIRSCLSCQQSKVPNKKATAPMVPVLAN
FT                 SCLELVSVDLYGPLPKSFGNFNHILVALDIFSKYVTFTPVRSAKAVPVTRA
FT                 FITHFVNAVGKPLRTISDHGPCFRSHYWDSKLKELDIEPRHTSVYHPQSNP
FT                 VERYMRILGNFCRIYCHENHKSWVQYLKFFEQCLNSSVSESSGFAPIEVLK
FT                 GCPPDNFLQKFCNFPPYQDKLGQQTRLTMVQENLTKSAIKRQKQKKTPDPP
FT                 DQFQEGMQVLLQTHHLSSALYGEIKKFFRLYEGPYSIKKRVGHNAFELEDP
FT                 ASGGSRGVHNVIYLRKFHPNLNQKM"
XX
SQ   Sequence 8016 BP; 2336 A; 1804 C; 1469 G; 2407 T; 0 other;
     acatggcgcc taacccgtgg ctcggtaact ttataatagt ttacctacct aactaccccg        60
     aattgtgacc ggtttcaagt gctataaagt ttaattctta aagtttagtg cgtatgcgta       120
     gtacggtttc cgccatcttg ccgataggca tcgggccgtg ctccactggt agtttataat       180
     tgagtgtttc tcactattta gtgtttaatt attttctctc tcactcttac cgtctattct       240
     agtctacctg ccatagtcgg ctttccacaa tctcgagtat tttccggttt cccgggaaaa       300
     ctaccatgtg cgttttcagc ggcagatttt taggccttca ttaatccgaa acagcgacct       360
     gttgaggcgc aagtttcgcc ttcaatcttg ggggtagata actattcgtg tcggggtgtg       420
     gtgcgggctc cgtcttccgg attttaccgg cgccgtaatc gcgcgaacca acctaatagt       480
     gtctctaacc tcagcggaca gtttgtttat gttttttagt ttcgtttatc tcattttcgg       540
     ttcatcaaac ctatctctcg gtctccgctt caaaatttct cactcaacac taatctcagg       600
     atggattttc ttaacttcag tattatctct tcaaaattat tctcatgcct ggatctcata       660
     acctcttgta aacaaactgg ctgtttctct gtggatggtg gaacgattcg atgtggggag       720
     ggctaactgc ggcatgttct ggaatggaaa caacattact tcaatctcta atctaatcac       780
     tggatcgtcc tttcttctgt tccagcattc ctacgtaccg ggatcatcct atactaagta       840
     tttataatac ctttttcttt atttttcttt ctcgtaaatt atagttttca gctttgctca       900
     atagtaattt tgggttataa tcagttacta taatgaattc ccctgtatca aaccatacaa       960
     ggaacttccg ggagaggagg ccagtcatgg gtgagcgctt ggatctgggc gagggtgagc      1020
     gcgtaccgga aggaaatgtg ggagtcccgg aagataactt gcctcaggga gctgttggac      1080
     cagttgtcga ggggcagaat gtccagaata tccagaatat cctgctgact ccaccaggtg      1140
     ttccaccagc ccccttagtc aggttccaac cttttcaaca acaaaatcaa gtgcggaatg      1200
     accaacttcc ttccgatatg cttccagctc actctgcgct cagacctgac cgcccacttg      1260
     ttgatacacc ttccgatcct aaccttaatg ttgttttaag taggttaatg caaaaaatcg      1320
     aaaatttaga gttagcagtg cactctaacc ctcaaactaa tcaagctata aaaatggaac      1380
     aacccatgtt atcacaaatt tcctctcaag ctgttgccgt gccgaacaac ctcgggccgt      1440
     acccgcagga gtcttccaag ccaacatatc agaatacccg ccgctttcac gaattgccca      1500
     catttgatgg aaccaagtat agcccccatc cgaaagactt tctaaatgaa gtagaggatt      1560
     ttttcgaaca attttgtgtg agtgacgagg taaagctgaa ggaggttgga aggctgctcc      1620
     gggacgacgc ccggagttgg taccaggttt acagagtatc cttcagatct tttactgatt      1680
     ttaaatctgc atttctggaa ttttactggg ggccacagat gcagaactca gccagactgt      1740
     ctctgcttgc tcccggtaga tcaccgccgg ggcatggtca gttagctccg tattttctcc      1800
     atcaacttag ggcgatgaat tatctagatg acacgccttc ggactcattc aaaatagcgt      1860
     ctatcattca aagtttccca tacgacgtca agctagctat cactcaattt aacgctacta      1920
     acatcgatgc tgtacttcag attttgaaaa gttttgacca ccttggcccg agaccatcat      1980
     cagatctaca agtggtacca tttcagaacc aacaagtgca gaacgtaaat aataactcta      2040
     gagctaaccc acgtgtcaac ttcttgtcta ttgaacatgc tcccggcgct gatcacgggg      2100
     agcagccaca gattttggat tctgcatctg cggcgcccca gccaggctac caacctttaa      2160
     actaatttgg agtgagccaa atacaggcga atccctcgct ccagtctgta taaccaaggt      2220
     agttacgcct gacaatgtca attattttga ttcatattat atgtatcatt taaggatgga      2280
     attttcggat gtaggaaagg ccgaaggaga atgtatttta ttttatcctg tgttttatcc      2340
     ctccttacct atgactcttt acctcaacaa ttgcactata ggtgctactc ttgcctataa      2400
     attacatgcg ccaactattc aaaagctgtt tcaacatgta agccacttta aagccaacaa      2460
     ttatagtgct gtcttagcca ttgtgccttt tgaaatgctc agtgatttag tggggggcac      2520
     gcagggctgg agaggcttaa tacaaaacac cggtgctaaa ccaattttct tatgcggtac      2580
     tccagttagg ccaaattctc ctgaattcca aacattagaa ataatgcacc aaaattttag      2640
     ctcacaatct gcttcaaata ataaaatttc aattctagtg cctgagaaaa ttttaacttc      2700
     acgagacttt gatgagcagg atgttttgag cctcaccggc cttgcacgca ttctacagca      2760
     ctttgcaacc aaattcagaa ataaactgct ggctaagcac tttgaaaatg aaattgtctg      2820
     taacagcttt acaacctttc tagacaacga gaaacacttt ttattagatg aaagcaatgg      2880
     tcaacctcag ttcaataaga gactcaaaag ccccgtagtg tcactcagaa ttgattctca      2940
     ccaggtgtca gttctgatcg acactgggag cgagataact ctaatcagtt tggaactctt      3000
     tgaagaactg aaatcagtta cgggcctacc ttttcccacc cttccggtga caaatattgc      3060
     tatcaaaggc attacagggg tgcgatcaaa aagtgttact ttccaaactt atattgactt      3120
     aaagtttaac gaaacgtgct ttccaacgcc aattcttgtg gtgccgtcag tcaatatacc      3180
     attcattgtc ggtatagact tcctaagaaa aaataaagcc ataattaact gcgctgaaga      3240
     gacccttgaa ttgtgcgatg ggatgattaa attgccttgg atgaattttg actctccgga      3300
     gaaaacttta ccagtcaata cttgctctgt acaacctatt aacagaattt tcttattaac      3360
     agatagtcat ggtagggatc tttccgatct tttgaaatca tttttaccga aaaacaccca      3420
     gatagaagcc agggttaaac caggattcca gtttgactcc gttactcagc ctctgtcctc      3480
     cttgtgtgtg acttcggata cggtggtcat cattgcaggt actaataacc ttgccaaatt      3540
     taaaacgctc cctgaaatct tagattcctt taatctcctc cctttaaaaa agttcaaggg      3600
     aaaaatagta atgtgtgaaa ttttcccccg atatgattgg aaggatagtc acagtcagtc      3660
     cacaccagta aatttatttt tgaaaaataa actccgtaaa tacaaacatg tcaacttcct      3720
     caaaacatta ggccaattac agcgaaaaca ctttacaaga caagggcttc acctgaatct      3780
     aagtggcaaa aaggagctag ctcagctgat agcaagaaaa gtagaagcat tgaaaacatt      3840
     agattccacc gctacacctg aatttgaggg aagtccgaga gtttattcga ctgaagtaac      3900
     tagggtctta tcttttacaa acttatggct cagtgaggta ccagccttcc cgatccatat      3960
     ttttagtgtc cataatgttg tgcccaccgt ctccgatctc acatacgagg aagtattggc      4020
     aaagattaac ccacttaatc taaataacga ccaaaaaacg cagctgttaa gtctcattga      4080
     aaacaatagg gatgttttct cagataaacc agggctttgc acaacattta ctgccaaact      4140
     tagacttaag aataaagaac catttgtgct aaggtccagg cctatcccct tttatttgaa      4200
     ggagagagtc cgggcagaag tccaaagaat gttagattta ggtttaattg aaagatcatc      4260
     aagtcctttc tctaacccta ttgtacccgt agttaaagaa gatgattcta taagactatg      4320
     tcttgatgcc agaaaactga atgagagact tgtatttgat gcggaggcgc ctgaatcgat      4380
     agagtcactc ttaaacaaat ttagcaaccc gcaatatatg agcaagcttg actgtaccaa      4440
     ctcgttctta caactaagtt tagagccaga atcaagggaa tttgttagtt ttgtgtttga      4500
     gggaaaaaac tatcaattcg gtagactccc attcggattg tgtgtctcca tgcaaatatt      4560
     ccttaaggca acagaaacaa tattcggccc cgaaacagct gactttttag ccaagtatgt      4620
     cgatgacttc aaaatagtaa gtcaaacctt ccctctccat ctggaacatc tccaaattat      4680
     actgtcagat ctgcgagcag caggcatgac cctcaaattt gctaaatgtc tcttcctcca      4740
     agagtccact gattttgtcg gatacatcct ctcaagagat ggcatcagaa aggaccccaa      4800
     aaccacaaga gccatatctg aatttcctca aataaccaat aaaaagacat tgcaatcatt      4860
     tttaggctta ataaattttt attccaaatt ccataataac catgccaaga tgacagttcc      4920
     acttcatcac ttgttgaaaa aagatgctcc gtggtcttgg ggccccgatg aagaaaagac      4980
     agtatcagaa attaagagag tttttataga ggacgtggtc ctatcttatc cagattttgc      5040
     caaatctttt tatcttaata ccgacggctc atacagcgct gttgcaggtg agttgttcca      5100
     gatggataaa gaaggctacc gcaggcctat ctgctattac agtagaacac ttactgcaag      5160
     tgaaaagaac tacacagtaa cggaaattga actcctagcc attgtagcgt ctttgaacaa      5220
     atttaggcag ttcactcttg gtcacaaagt tattgtcttg actgaccata gtgcgctcac      5280
     gtttttaagg agttgtgtgc tttcctcggg ccgcctggta agatggtccc tcttcctcca      5340
     acaatacaac ttagaaatcc aacacatcaa gggctcggaa aacacagctc tagatatatt      5400
     gtcccgatat accccagaat ttcaccaact acctactaat aatgtagata ttaatgtaag      5460
     cgctgtgaaa acatttgctc caaaattgaa ttccaaaaac tttgctaaaa tatctgagtg      5520
     gacgttgctc gaccctagac taggtaaaat tcacaaagaa ttaactgaaa acaaggactc      5580
     tccttcaaag aatctctaca ctattttaaa caataactta ttcttcaaag acccaaaatc      5640
     gggaaattgc attctttgta ttccacagaa attagaaagt gagataattt ttgcaacaca      5700
     tgaatacctg ggccatctag ggtcgaacaa ggtctaccag taccttaagc gcatcgccat      5760
     cttcccaaag atgcaaccaa aaattcgcca gctaatccgc tcgtgtttga gctgccaaca      5820
     aagcaaagtg ccgaacaaga aagctacagc accgatggtc cctgttcttg caaactcctg      5880
     cttggaactg gtctcagtgg atctgtatgg accacttcct aaatcttttg gcaatttcaa      5940
     ccacatctta gtagccttag acatattttc aaagtatgtt acatttactc cagtccgttc      6000
     tgccaaagca gttccagtaa ccagagcttt cattacacat tttgttaatg cggtaggtaa      6060
     gcctctaaga acgatcagcg accatggccc ttgttttcgc tcacactact gggacagcaa      6120
     gctaaaggag ctggatattg aaccccgcca tacttcagtg tatcatcctc aatccaatcc      6180
     agtagagcga tatatgcgga tattaggtaa cttttgccgc atatactgcc atgaaaacca      6240
     caaaagctgg gttcaatatc tcaaattctt tgaacaatgc ctcaacagca gtgtgagcga      6300
     aagctcgggc tttgccccaa ttgaagttct aaaaggctgt cctccggaca actttcttca      6360
     aaagttttgt aatttcccgc cctatcagga taagttaggt caacaaactc gactgacaat      6420
     ggttcaagaa aatcttacca aaagcgccat caaacgccag aaacaaaaga aaaccccgga      6480
     ccccccagac cagttccaag aaggaatgca ggttctcctt caaactcatc acctatccag      6540
     tgccttatat ggagagatta aaaaattttt tcgcttgtac gaaggcccat attccatcaa      6600
     aaaacgggta ggtcacaatg cttttgaact ggaagaccca gcgtcagggg gctcgagggg      6660
     agtacataac gttatttacc tccgaaaatt ccatcccaat cttaatcaaa aaatgtaaaa      6720
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaattg      6780
     tcttgtcctt tttttttagt tatatataat atatatatgt atttaatctt tttttttttt      6840
     tttctttttt tttccgtcct cgttggggaa gggggttgaa cccacccttt gctttttatt      6900
     tcccactttt gcggaaaact caacccttcc caacttgaac gcaacttagt tcatgtaagc      6960
     gtcagtgtaa taatgaaatt ttgttaccct tactctctag tatagcacta actggtcaca      7020
     accttcaatt tttcttaatt ttcccttatg gaacaccgac acctaggtct atctttcttt      7080
     tccattccta aacccccttt aggttagtta ggttagtttt cactcgatgc gtccagatag      7140
     gtttttgtcg aaactccgga acattgagta tcttcaacac gaggatagcc ctgacttgtt      7200
     taggctacct caaggagaat actcacggag gccctagcgg taagtcaggg ccctcctcgt      7260
     cttatatttt ttttctcttg ctttgtgtaa tgctgctcag aaaagttttt gtaaaagccc      7320
     cgagcggctt acaaggctgt ttggcctcac agtcttaaaa gcacccctcc cctaactttg      7380
     tatccaaatt cttttatttt tattgtttat ttctctacta ggccaaacca ggaaaagaaa      7440
     agaaagagtt ctaatgatat taaatcttgc taatagtatt aaatttctcc atctacagct      7500
     ttaactcctt caaagttatt tcttctttct ttcatgcaat tttattattg ctcaactact      7560
     ttgtattttt tggcccactg caggcccagt ttttttttat tattgaattt tattattgtt      7620
     tacctacttt atatttttgg cccactgcag gcccagtttt ctttttattc aattttattc      7680
     ttgtttaaca actttgtatt tttggcccac tgcaggccca gtttcctttt attattgttt      7740
     aacgactttg tatttttttt agcacttagt tcaaaaactc tttttgtcta aaactaacaa      7800
     atttttaggt aaattgtcct gttatttttt ttgatgatct caactgtaaa tatgttctct      7860
     ttttaagtat ttgattacca aataaaggtc gcgggcgaaa aaatcatagc ccgagtcggt      7920
     caccacagct ctcacttcat atctccgttt cgttggggat tccggagtcc cttgggcccc      7980
     agtcccctgg gacacaaggg gcttcggggg ggttgt                                8016
//
ID   Gypsy-21_TrVa-LTR repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-21_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-409
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 325-325 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 409 BP; 89 A; 101 C; 90 G; 129 T; 0 other;
     tgtaacgagt ggattccaaa tccgaactta ccgccactcc aaaccgtgga gtagggggat        60
     gacacctccg acgcccgccc tggtggcggt tgccggaggt ctcatcctcc tacacacaca       120
     cactttctat atagtttaac attcgttctc gtaagccgta ggcgttctct ttctcttcta       180
     tctttaatgt gagtatagtt ttgggttcca cccccttctg gggtggaatt attgtctaaa       240
     tgtcttatta ggagttatag ctgtggtggc cggtggccac atattaatac tttacttgtt       300
     tcgttttgtg ttctcaataa tcataatctc tacgggacag ataccggtct tgtctcatta       360
     ggcagggccg gtgtctgtcc agcaaccttt caaatagcaa accgctata                   409
//
ID   Gypsy-22-I_NVi repbase;    DNA;    INV; 6972 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-22-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6972
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 781-781 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           661..1947
FT                 /product="Gypsy-22-I_NVi_1p"
FT                 /translation="MAVAAGKTHNRRSLAILEEIQKLQNEHNPDNAEKELE
FT                 WKNAVVYELATLDKKQSTLEERVEKLETNEDLDSLGEPHIRTSFLNTSKEH
FT                 KQFETIERIDALALTLEKIKKESDNNKIDIDNLQQSHDAMKKRLATVESDY
FT                 DALSDQHTKLQSDFNDIRTLIETKASQTELCLRMQKIIEAQARESTRLEKL
FT                 IKNNNGGSSESTTDITKRVKIATPKFKGLASERPMKFLSELDNYIKLVKPE
FT                 DHELKYVISQALEGDAHNWWYLLQAEVDSFETFSTRFRERYWNNQIQRTNG
FT                 RKVEFGQYSPGPRSRVSYATYMFGLARELELNLEEHELVKKIAEHFDRDIR
FT                 RTVTGHEIKSVNKFLEILADYDNDDTNRNRANAQNNQNAQNKQNNQNHKPT
FT                 XPPAGNNESKNKAVSLTSQQATIPVRKRRGRHTI*"
FT   CDS           join(2186..2650,2634..5480)
FT                 /product="Gypsy-22-I_NVi_2p"
FT                 /translation="MENPRNELLHDINPDGREVEXSHCPEIKIFIENIEVD
FT                 ALVDTGSEVTAISEEFYHQNYETLKLCPTLPICGKVIKGATGSKSARLKIQ
FT                 LRLNTKFEKLSEKIIFLVIPKLVKPCIIGFDTIKLLKMLIDTVHEQILFSV
FT                 KNXDGVITYVDKKNAATKKMPRNEFTSLTIQDAGGYTEKGYHTDLNNLYED
FT                 YENNYENPYELTIEEIDGKINSCENLNEAQRNILKNLIIKRKEVFEKKPGL
FT                 LTTYEHELIITDNTPWFCRPHPIPIADRQDALDEFDRMLKLNIIRRSNSVY
FT                 INPIQIVRKRDGSVRPCLNAQKLNMVLQNNYEGXPXIDEVLQRCADRPITS
FT                 VTDFTASYWQIRLAENSRKYTAFKVDSHVYEFNVVPFGIKTSGSALIRGLA
FT                 EATWDFNEFLVLFVDDLMIKSRTFEEHIEHLDKLYERLIEHNLRLNFKKSK
FT                 FFCEEIEFLGHYISAKGIRPDPEKIRTIRNFKRPKNLKQLQSFIGFINFYS
FT                 KFTKHFAESLIPLLNLMRKNVLFHWTTEHQEAFEKIKTLFDDNIILKYADP
FT                 KKPYILTTDASDFALAAVLSQLNDEGEEEVVCFVSRTLKGSECSYFTTEKE
FT                 MLALVWSLNKLDTYLRGAIEIRVRTDHEALTFLRTCKFNNQRLQRWNLAIQ
FT                 DFNLNPTHIPGKQNAVADYLSRMDESEKSKAESQSEIIISAIVQQKPSREL
FT                 INICKNIEKSQRRDPQTRTLIDELVNNDEKTCKRYELIDHVLYKKAKERSK
FT                 IVIPNSVLRDFINEVHAIYGHIGGGGGRKLNKMLCEHFYASGLRRKIAKIL
FT                 KTCDSCQRTKHLTKKYREMSQPILTQKPGELLSIDFYGPLPTSAGGVKYLL
FT                 TSIDVFSKYVVFYPLRRATAHAVIKKLTEDYIPTYGKPEAIICDHGTQFTS
FT                 DKFVNALKNENIKLVYSSIRHPQSNIVERVHRELGRFFRTFVSDKHKGWSR
FT                 YVKIIQNIINETHHETTNYTPTELHFGRKPMRVWEKYLYIPPEKDEITNEK
FT                 RISLACEQAHRIALKRAAKKNAHAEHFELDIGNKVMIKALNVSDAENGKIA
FT                 KFFDIYQGPYEVQKKVGIDTYLLIDINTKKERGKFHINNLKPYFED*"
FT   CDS           5806..6588
FT                 /product="Gypsy-22-I_NVi_3p"
FT                 /translation="MEATPTTSEPQVPKPRKRESSSQTEPMAICDQLTQVN
FT                 EAMLAEGYAECWTXKYKISCLXTLMARGSNFMPGNKRFAKGWFYQTPPGWG
FT                 KRDQKTGTEATPPDPATATKVLIPRRYIPARPRPTKPSAAPRIVTVVHLPP
FT                 LDDAGRANLMLPALAPPQQQQQLPPTATPAPASPQQPPKKEEKKAPCPPPR
FT                 QQTRPVALKRHLVNHHERYEPQARNEGWREEGRRLLEEKRAPRAAPSTSAA
FT                 TSAPSTSTATSRRHSTEPP*"
XX
SQ   Sequence 6972 BP; 2473 A; 1564 C; 1426 G; 1470 T; 39 other;
     ttggcgcccg aacagggacc cgggtttgtt ataatacggg agattgacta agggagatca        60
     ttgaaacatt ttttmttttt actttggaga cttgaaaact ccaccacgct caatgatccc       120
     ccttcttcag ttatcgctcg ccgagcaaca aatacacaag cgcctcgata atctctgcga       180
     ggcgatctgg garctaacca agcgcagcac gcggaactac gaagccctcc aaaatgttga       240
     caggaacgtc aaaacgtgtc ataagaatgt gttaaatctc gatcgtgatc tacgcgtcct       300
     ggaaaaggga ttcgaagaat tcctmgaaga agaaactgaa acactcaaac tgatcgagaa       360
     aatatcggcg cgaacggaca taaaattccg aatcctgaac tcacgactcg actcgctcga       420
     ccgggaagtc tcgaaaataa ccgacgggat gagtaagtta acgattcacg agccgacgtg       480
     cagcttaatg taaagcgcgg taacgtttcc cccatccccc ccatctatgt ggcaatctca       540
     agcatcaaaa aaaaattttt ttattaatcc ttagataacc aaattttttc tcctttcttt       600
     cgattacagc ctataggccc tttctctagc tttgtctrcr gctaaaaaaa aaaataaaaa       660
     atggctgtag ccgcgggtaa aacccacaac aggcgctctt tagcgatcct agaagaaatc       720
     caaaagttac aaaatgaaca taatccagac aatgcggaga aagagctaga gtggaaaaat       780
     gctgtagtat acgagcttgc cacattagac aaaaaacaaa gcacactcga agaacgagta       840
     gaaaaattag aaactaacga agacttggac tcactcggag agccacatat acgtacgagt       900
     tttttaaaca cgagtaaaga acacaaacag ttcgaaacta tcgagcgcat agacgctctt       960
     gccttaacgc tagaaaaaat caaaaaagag agtgacaata acaagattga catagataac      1020
     ttgcaacaaa gccatgacgc gatgaaaaag aggctagcaa ccgtcgagtc ggactatgat      1080
     gccctctctg accaacatac taaattacaa tcagatttta atgatatacg cacactaatt      1140
     gaaactaaag catcccagac ggagctatgt ctgcgtatgc aaaaaattat cgaggcacag      1200
     gcaagagagt ctacacgact cgaaaaactt ataaaaaata ataacggtgg ctcttccgaa      1260
     tctacgactg atattactaa acgcgtgaaa atagctacgc cgaaattcaa aggtctagca      1320
     agcgaaagac ccatgaagtt cttgtcagaa ctagacaatt acattaaatt ggtcaaaccg      1380
     gaagaccacg agctaaaata cgtmatatct caagccttgg aaggcgacgc gcataattgg      1440
     tggtatttac tccaagcaga ggtggatagt ttcgagacgt tttcgacgcg cttcagggaa      1500
     cgctactgga acaatcaaat tcaaagaacg aatggtcgta aagtagaatt cggacagtac      1560
     agccctggrc ctcgaagccg tgtcagctat gccacntata tgttcggtct agcccgcgag      1620
     ctagaactaa atctagaaga gcacgagctc gtgaaaaaga tcgcggagca cttcgaccga      1680
     gacatacgrc gtacggtaac cgggcacgag ataaaatcag taaacaaatt tctcgagata      1740
     ctygccgact acgataacga tgacacaaat cgaaatcgag ccaacgcgca aaataatcag      1800
     aacgcgcaaa acaaacaaaa taaccagaat cataaaccca ccyacccacc cgcgggtaat      1860
     aacgagtcga aaaacaaagc ggtcagccta acaagccaac aggcaacaat cccggtcaga      1920
     aaaagacgtg gacgccacac aatatraacg ttacgcagac agcagacgac acawccaaca      1980
     agggatcagg gtcgcaaaac aaaggtggga acaaaaaaca gggaaataat aaaccctctc      2040
     agaaagatrc ctacgacatc gacgtcttgg attgttttca agacataact aaacaaaatt      2100
     cgggaaacat gcagtagctg cgtccaaggc ggatgcactt ccttctctag ggaagaacga      2160
     cgcagctgct caaatcgcgt ccatcatgga aaacccgcgc aacgaattat tgcacgayat      2220
     taacccggac ggtcgcgaag tggaartatc ccactgccca gaaataaaaa tatttataga      2280
     aaatatagag gttgacgcac tcgtggatac gggaagcgag gtaacggcca tttctgaaga      2340
     attttatcat caaaattacg aaactcttaa gctttgtcca acattaccta tttgcggtaa      2400
     agtcataaaa ggcgctacgg gtagcaaatc ggctcggctt aaaatacaat tgcgtttaaa      2460
     tacgaaattc gaaaaactgt ctgaaaaaat catattctta gttataccma aactagtcaa      2520
     gccttgtata atcgggttcg acacaatcaa actattaaaa atgttaattg acacggtaca      2580
     cgaacaaatt ctcttttcgg ttaaaaacra cgacggagta ataacgtacg tagacaaaaa      2640
     aaatgccgcg taacgarttc acgtcgctaa caattcaaga cgccggtgga tacaccgaaa      2700
     aagggtacca cacggatctc aataatcttt acgaagatta tgaaaacaat tatgaaaatc      2760
     catacgaact cacaatcgag gagatcgatg gaaaaatwaa ttcttgtgaa aacctcaatg      2820
     aggcacaaag aaatatatta aaaaatctaa ttattaaaag aaaagaagta tttgaaaaga      2880
     aacccggtct tttaacaacc tatgagcatg aattgattat tacagacaac acaccttggt      2940
     tttgccgacc acacccaata cccatcgctg acagacaaga cgcactagat gagtttgaca      3000
     ggatgttaaa attaaacata ataagacgct cgaatagcgt atatataaac ccgatacaga      3060
     tcgtaaggaa acgcgacgga tcggtaaggc cgtgcctaaa cgcacaaaaa ttaaacatgg      3120
     ttctccaaaa taattacgag ggacyaccga statcgacga ggtactacaa cgatgcgctg      3180
     ataggccaat aacaagcgta acagatttca cggctagtta ctggcaaatc agactagcag      3240
     aaaattctcg aaaatacacc gcgttcaaag tcgatagtca cgtctacgaa tttaacgttg      3300
     taccgttcgg tattaaaaca agyggatccg cgttaattcg agggctggcg gaagccacgt      3360
     gggatttcaa tgaatttctg gtactatttg tagatgatct aatgatcaaa tcgcgtacgt      3420
     tcgaagaaca catcgaacat ctcgayaaat tatatgaaag gctaatcgaa cataatttac      3480
     gattgaattt caaaaaatct aaatttttct gtgaagagat agaatttctc gggcattata      3540
     tttccgcaaa aggaatacga ccggatccgg agaaaatacg tacaattcgt aatttcaaaa      3600
     gaccgaaaaa tttaaaacag ctacaaagct ttattggatt cataaatttc tattcaaaat      3660
     ttacaaaaca cttcgctgaa agtctaatac cattattaaa tctaatgaga aaaaatgtac      3720
     tattccattg gacaaccgaa catcaagaag cgttcgaaaa aataaaaacg ctttttgatg      3780
     ataacataat tttaaaatac gcggatccaa aaaagccgta catactgacg acagacgcgt      3840
     cagacttcgc gctcgccgcg gtcctctctc aactaaacga tgagggagag gaagaagtag      3900
     tatgctttgt aagcagaaca ctcaagggta gcgaatgctc atatttcact acagaaaaag      3960
     aaatgctagc cctcgtgtgg tcacttaaca agctcgatac atatttaagg ggggcaatcg      4020
     aaattagagt ccgtacggat cacgaggctc taacattcct aagaacttgc aagttcaaca      4080
     accagagatt acagaggtgg aacctcgcga tccaggactt taatttaaat ccaacgcaca      4140
     ttccagggaa acaaaatgca gtagcagact accttagccg catggacgaa agcgaaaaaa      4200
     gtaaggcaga aagccaatct gaaatcataa tttccgctat cgtccagcaa aaaccaagcc      4260
     gcgaactcat taatatatgt aaaaacatag aaaagagcca gaggcgggat cctcaaacgc      4320
     gtacactaat cgacgagctt gtaaacaacg acgaaaaaac ttgtaaacgg tacgagctaa      4380
     tagatcatgt attgtataaa aaagcgaaag aacgatcaaa aattgtaata ccaaatagcg      4440
     tgttaagaga ttttataaac gaggtacacg caatatacgg ccacataggg gggggggggg      4500
     ggcgaaaatt aaataaaatg ctatgcgagc atttctacgc atcaggctta cgcagaaaga      4560
     tagcaaaaat tttaaaaaca tgtgacagtt gccaacgcac taaacattta actaaaaaat      4620
     acagggaaat gtcacagcct atcttgacgc aaaagcctgg tgaattactg tcaatagact      4680
     tttacggtcc acttcctacc tcggcggggg gagtaaaata cttattaaca agtatagatg      4740
     ttttcagtaa atacgttgtg ttttaccctc tccgtcgagc aacagctcac gcggtaatta      4800
     aaaaactgac agaggattat ataccgacgt acggtaaacc agaagcaata atatgcgacc      4860
     acgggacgca atttacgagc gacaaatttg taaacgcgtt aaaaaacgaa aatattaaac      4920
     ttgtatactc atctatccga cacccwcaaa gcaatattgt agaaagggta catagagagt      4980
     taggacgatt ctttcgtacr tttgtaagcg acaaacataa aggttggtcg cgatacgtga      5040
     aaataataca aaatattata aatgaaacgc accacgaaac aacgaactay acaccgacgg      5100
     aattacattt cggccgaaaa cccatgcgag tatgggaaaa atacttgtat ataccgcccg      5160
     aaaaagatga aataactaac gaaaaacgaa tatcgcttgc atgcgagcaa gcacatagaa      5220
     tagctctcaa acgcgcggcg aaaaagaacg ctcacgcgga gcactttgaa ttagatatag      5280
     gaaayaaagt aatgataaaa gcgttaaacg tatccgacgc ggaaaacggg aaaatagcta      5340
     aattttttga tatttaccaa ggaccatacg aggtccagaa aaaagtcgga atagacacat      5400
     acctacttat agatattaat acgaaaaaag agcgaggaaa gtttcacata aataatctta      5460
     agccgtattt cgaagattga atacacaatt cataaaaaga aagaaaatca acaaaagaaa      5520
     atttattttt taatatacat agaaccgtga attgtgaatt caaacaaatt taytaaaaca      5580
     attcgaaaay ataaaaaact caaaaaattc aagaaacagt aaaatcacga awargagaga      5640
     gagagagaat aacacsgcgt acgcgacaaa acgccataca catctcgcga cctacgcgac      5700
     ctracaaaaa acaaaaacag cggccgcagc cagccgccga attccaaaaa gcctaagcgc      5760
     cgaaaaaaga gctgcaatga gctcagttga cactaatcag tcgaaatgga agctacwcca      5820
     acaaccagcg agccccaggt gccgaagccg aggaagcggg agtcgtcrtc gcagacagag      5880
     ccgatggcga tctgcgacca gctaacgcag gtgaacgagg cgatgctagc tgaaggctac      5940
     gcagagtgct ggacacwaaa gtataagata tcatgtctcy gcactctcat ggcccgcggc      6000
     agcaatttca tgcccggcaa caagcggttt gcgaagggct ggttctacca gacaccaccy      6060
     ggctggggga agcgagatca aaaaaccggg accgaggcaa ctccaccaga cccggccaca      6120
     gcaacgaagg tgctgatccc gcgtcgatat atcccagcca ggccaagacc aaccaagccc      6180
     tctgccgcgc cacgcatcgt caccgtggtg cacctgcccc cgctggacga cgccggcaga      6240
     gcaaacctga tgctcccagc gctcgcacca ccgcagcaac agcagcagct accaccaaca      6300
     gccaccccgg cacccgcatc accacagcag cctccgaaaa aagaggagaa gaaggcgccc      6360
     tgcccccctc cccgccagca gacccggccg gtcgcgctaa aacgccacct ggtcaaccac      6420
     catgagcgat acgagcccca ggctcgtaac gaaggctggc gcgaggaagg caggcgccta      6480
     ctcgaagaga agagggcacc aagggcagcc ccctccacgt cagctgcgac ctcagccccc      6540
     tctacctcga ccgcaacctc tcgccgccac agcaccgagc cgccatgaag ccaccgacga      6600
     tcgcggagat actccgcagg gtgtacgcag cggcggagat cggcgaggcc accgtcgccg      6660
     agtacgagga gttcgccgaa gacggcataa gattttattg ttttttatta cttgtctttt      6720
     catttgacga tggcatcgat gccgattctt tttttgttac ctgttaaaag cactgacgct      6780
     acgtttcagt ttaattataa aaaagagttt tttatgtttt tttaattaac tttaagaaaa      6840
     taaattttgt acttttttat aagcacggac tatgttctct gttgctgctc tcttgtccgc      6900
     cttttccttt aaataaaaaa ttgtttttca acagacgcag tgccgtctca aaaaattttt      6960
     attggggggc at                                                          6972
//
ID   Gypsy-22-LTR_NVi repbase;    DNA;    INV; 768 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-768
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 782-782 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 768 BP; 189 A; 190 C; 190 G; 199 T; 0 other;
     tgagacggca ggccccgccc ggggataaga gagcagcaat agataacttg cctggcgtag        60
     gcaagttacc gactgagtgg cgctagtagc caaatgtaaa tagtctacct acgagctggt       120
     agatggcgtg cgcgcatgta acacaggaga gagggagcga ctcgggtata taaggagccc       180
     cggagccagc agcgagcatt aatgatctgg ctctcaactg agcaacgtgc gaatggtagt       240
     actcgctgct tgctccggtc tccaccatac ccagtagtcc atgagcccca ggctctcgaa       300
     gagtatgtgt gcagtccact ccctctcctt gtaggctgag atccagtatc gcttataaat       360
     aaatattaaa tgattaaatg aataacattt aaaacatata aactatttca acccttgttt       420
     tccacccggt gtaggatggt agtaccctgt tcttaggtgg cgcatctggt tctagactca       480
     tggtgagatg gtagtacctc acacatcagt ctaatagctg cgtggtttac ctaagtgtgc       540
     gggatatgcg tagtggatat accctactca tctccttcaa cacacgagca gctctcctct       600
     ggtggctcgg ccattacaga ggatagggag gtcttttgtc cactcaatag atattaccgg       660
     gtggatcaaa gactgttatc gttcttcgaa tgtgcttctc tcctgcttta ctaacctcgg       720
     gtcacgaatc cttcgcgttc gcgtactaac ccttcgcgga ccgtttca                    768
//
ID   Gypsy-220_AA-I repbase;    DNA;    INV; 7602 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-220_AA_;
KW   Gypsy-220_AA-LTR; Gypsy-220_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7602
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1043-1043 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4689-5165] - Integrase core
CC   'TTTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1153..2319
FT                 /product="Gypsy-220_AA-I_1p"
FT                 /translation="MAKMNNRIVDVRQTNRNLRSQRPNIMTDESDTEYDTR
FT                 QRNNWQFQDHFRNRLQRNGNRRDRERLVERRSTPSGDRFSTRGSHTSDSYR
FT                 PRFTRQSRRIEHWKVSFSGDNRTVSVENFLYKLKKIAAREEVSQQSLLRDI
FT                 HLILEGQASDWFFTYVDEFEDWDDFEEKIRFRFGNPNQDQGIRQRIHERKQ
FT                 QRGETFSAFVSEIERLNKMLSKPLSRRRKFEVVWDNMRPHYRSKTSIVRVR
FT                 DLEHLIQLNHRIDAADGSFQTHLEARNVESRTQRNVHQIDCASSQDEREEC
FT                 EDLDAIDARLNQRGQHPNVRNQPTTIRNTNTQGQQQGGPAMGGVCWNCRKS
FT                 GHNWRDCKEPRAIFCFGCGELGRTIRSCQRCTDSSRRWAGQNQGNQ"
FT   CDS           2262..5552
FT                 /product="Gypsy-220_AA-I_2p"
FT                 /translation="MPTMHRFQPQVGWSESGKPVKECLLGNSNIPSNNVPK
FT                 EAINFDPIDRIHTIKIQTRRCPYLRVNVFETELVALLDSGAGISVINSLEL
FT                 SEKHGLRLQPTRLRVCTADNTEYKCLGYLNIPYTYKNITKVVPTVVVPEIS
FT                 KPILGCNFWRSFGIAPMADLGNGPEQVGQFTDSEEMIAFTLEPIGDLPKVQ
FT                 LSGTDSTLDVPTFDIPEGTQEPTVETLEVEHELTEGERQELVQVMKGFEFT
FT                 STNKLGRTHLIEHEIVLKQDAKPKNQVMYRSAPAIQREIDAEIQRFKDMDV
FT                 IEECYSEWTNPLVPVRKSNGKIRVCLDSRRLNSMTVKDSYPIRNMLEIFQR
FT                 LENAKYFSIIDLKDAYFQIPLKEESRNYTAFRTRQGLFRFKVLPFGLTNAP
FT                 FSMCRLMDKVIGFDLMPSVFVYLDDIVIASKTLKEHFRLLKIVAERLRDAN
FT                 LTISLEKSRFCRKQVKYLGYLLTERGVAIDGSRIAPILDYARPKTMKDARR
FT                 LLGLAGFYQRFIQNYSRITAPITDLLKKSKKKFEWTEAAESAFSELKSVLT
FT                 SAPILANPDFSKSFTIESDASDTAVGAALVQELDGENRVVAYFSKKLSRTQ
FT                 RAYSSVEKECLGVLLAIENFRHYVEGSRFKVVTDARSLLWLFTIGVESGNS
FT                 KLLRWALKIQSYDIQLEYRKGASNITADCLSRSVNLLDLSSQDDEYEELVE
FT                 KVQAEPDKFADYRVTDGNVFRYLKSTNRLEDGRFRWKLFPRNKERAEILRK
FT                 EHDVAHFGFEKTLQNLKRRYFWPGMAKDVRKFCQSCLKCQTSKAGNVNVTP
FT                 PMGAQKEFVEHPWQFVTLDYVGPLPPSGKGRHTCLLVATDVFSKFVLIQAF
FT                 REAKASSLIEFVRNMIFLLFGVPEVILTDNGTQFTSKAFRDLLAEYGVNHW
FT                 LTPSYHPQVNNTERVNRVVTTAIRATIKQHRDWADNLQTIACAIRNAVHES
FT                 TKYTPYFVVFGREMVSDGQEYQKMRQADSGDSMQQPFGSGRREKLYAEIKQ
FT                 HLAKAYERHKRTYNLRSNSECPTYTAGETVLKRSFEQSSKSKNFCAKLAPK
FT                 YELAVVRKILGKHCYELENLQGKRLGVFYGSHLKKMHPPT"
XX
SQ   Sequence 7602 BP; 2327 A; 1503 C; 1715 G; 2055 T; 2 other;
     tttagcgtgc tacattttgg cgcccaacgt ttagaaggca aacacatttt tttcattttt        60
     tggcgcttat tgaataattg cacgttttag aattttcctt catttattga atacaataaa       120
     ataagtacat aactaaattt gaaccgtata atttatagac aaatgcggta ttttccaacc       180
     attttccttc tagtcatcat ttattagatt aaaatacaaa cagaaatata ttatttttca       240
     tttatttatt tatttattta tttatttatt tatttattta tttatttata catatattat       300
     ttcgtgctgt acattgatat tgtgttaaaa ttgtgcgttt tcctgtatat tttgcattaa       360
     agatacgtat tagtgaactt gctagtgttt atataattat taagatctgt ttacactcct       420
     attttgaaca acatgctttt tccccacgct gattatttga cgaatgacga aatcaattat       480
     gagcttatat tgcgaaatca tcaagaagat gttcataaag atgttcaaac taaattgcga       540
     ttgttgcgaa ggttgtttca aaccgatcag aaagagggat gggactacaa gtctcctttc       600
     aaattcgaac aggaagctca tatcataaca aatacggttg aacaaatacg agaagcatgg       660
     caaatgaggg agggagatcc tagactcgta tcacggttgc gacattacta tttacgagtt       720
     agaagagggg aaacgtctga tagggatgtg gaaaatacga gaagagaact tcttaaatca       780
     atctctgaga ttcttcgtag tacgactgag aagactccag aggacgagaa cgagataggt       840
     gaagctgcag ccaaagaaga cggcaagtca ggtcacggca gtcaggaggc taaacggttg       900
     ggggcatatc cgaaaaacag actttcacct tccaaaccag aaaccgttcc aacaaagaag       960
     agtgttgttg aaccgacata cgaggagttg ctcgataaag ttcgggaact gcagacaact      1020
     cttcaacaaa tgcgaattcg tagcgggcgt gaccagcaac ggaggcagga ggaattaaga      1080
     acgtcacagt cgaaagaggc aaggcagtcc gagaacgtag kaacagatgc tgatagcagt      1140
     gaaccggaaa gcatggctaa gatgaacaac cgaatagtag atgttaggca aacgaatagg      1200
     aacttaaggt cacagagacc taacattatg accgacgaat cagatacaga atacgatact      1260
     aggcagcgta acaactggca atttcaggac cattttcgga atagacttca gcgtaatggc      1320
     aacagacgag atcgagaaag gttagttgaa cggcgaagca ctcctagtgg cgatcggttc      1380
     agtacaagag gttcccatac atcagatagc taccgaccma ggtttacgcg ccagtcacga      1440
     aggattgagc actggaaagt ctccttttct ggtgacaata ggacagtgtc agtagagaac      1500
     ttcttgtata agttaaaaaa gattgctgct cgggaggagg tttctcaaca aagtctgctg      1560
     cgggatattc atctgatctt ggagggacag gcctcggact ggttttttac gtatgttgac      1620
     gagttcgagg actgggacga cttcgaggaa aaaatcaggt tcagatttgg aaatccaaat      1680
     caggatcaag ggattcgaca gcgaattcac gagcgaaagc aacagcgggg ggaaactttc      1740
     agcgcctttg tctcagaaat agagcgtctg aacaaaatgc tctctaaacc actctcaagg      1800
     cgacggaagt tcgaggttgt gtgggacaac atgcgcccac actaccgctc aaaaacgtct      1860
     atcgtccggg tacgcgatct agagcatctg atacagctaa accacaggat tgacgcagca      1920
     gacggaagct ttcaaacaca tcttgaagca agaaatgtag aatctcgaac tcaacggaat      1980
     gtacatcaaa tcgattgcgc ttcgtctcaa gacgaaaggg aggaatgtga agatcttgat      2040
     gcgatagatg caaggttgaa ccaaagagga caacatccaa acgtaagaaa ccaaccaact      2100
     acgatcagaa acaccaacac acaaggccaa cagcaaggag gtccagctat gggaggagta      2160
     tgttggaact gcaggaaaag tggtcataac tggagagact gcaaggaacc cagggctatc      2220
     ttctgttttg gctgtggtga gcttggaaga accattcgtt catgccaacg atgcaccgat      2280
     tccagccgca ggtgggctgg tcagaatcag ggaaaccagt gaaggaatgt ttgttgggga      2340
     actcgaacat tccatcgaac aatgttccca aagaggcaat caactttgac ccaatagatc      2400
     gcatccacac catcaagatt caaacgagac gatgcccgta tttacgcgta aacgttttcg      2460
     aaactgaact agttgctcta ctagattcag gggccgggat aagcgtaata aactccttag      2520
     agttgtcaga aaaacatggt ttgcgacttc aaccaacgag actcagagtt tgtacagccg      2580
     acaacacgga gtataaatgt ttaggatacc taaacatacc atatacttac aaaaatatta      2640
     ccaaagtagt gccaactgtg gtggtaccag aaatctcgaa acccattcta ggttgtaatt      2700
     tttggcgtag ttttggtatt gcaccgatgg ctgacttggg gaacggacca gagcaagttg      2760
     gacaatttac cgattcagag gagatgatag cgtttacctt agaacccatt ggagatctcc      2820
     caaaggtcca gttatcggga acagactcaa cgcttgatgt tccaactttc gatatcccgg      2880
     agggaacaca agaaccgact gtggaaactt tggaagttga gcacgaattg acggaaggcg      2940
     aacgacaaga gttagttcag gtaatgaagg gcttcgagtt cactagcact aacaaattgg      3000
     gacgaacgca tcttattgaa catgaaattg tgctcaagca agatgcaaaa ccgaagaatc      3060
     aagtgatgta tagatcggct ccagcaattc aaagggaaat agacgcggaa atccaaaggt      3120
     tcaaggatat ggatgttatc gaggaatgct atagcgaatg gacgaatcca ttagttccag      3180
     tcaggaagtc caacgggaaa atacgagtgt gtctcgattc tcgtcgactg aatagcatga      3240
     ccgtcaaaga cagctatcca ataaggaata tgctggaaat ttttcaacgg ttggagaacg      3300
     caaaatattt ctctatcatt gatttgaagg atgcgtattt ccaaattccc ctaaaggaag      3360
     aaagtaggaa ctacacagcc tttcggacac gacaaggtct atttaggttc aaggtgttac      3420
     cattcggttt aacaaatgca cctttctcga tgtgtagact gatggacaag gtcatcgggt      3480
     tcgacctgat gccctcagtg tttgtttacc ttgatgatat agtcattgcg tctaaaacat      3540
     tgaaggaaca ctttcgtcta ctaaagatcg tggcggagag gttgagagat gcaaatctaa      3600
     cgatctccct cgagaaatca cggttttgtc gaaaacaggt caagtacctc ggttatctgt      3660
     taaccgaaag aggggtagcc attgatggat cgagaatagc accaattctg gactacgcaa      3720
     gacctaaaac tatgaaagat gcacgcaggc tgttaggatt ggcaggtttc taccaaagat      3780
     ttattcaaaa ctacagtaga ataactgcac ccattaccga tctgcttaaa aaatcgaaaa      3840
     aaaagttcga gtggacggaa gcagcggaaa gcgctttttc ggaactcaaa tcggtattga      3900
     catcagcgcc aattctggcc aacccggatt tctcgaagtc atttacaatt gagagtgatg      3960
     catctgacac ggctgtcgga gcagctctcg tacaggagct ggatggagaa aatcgtgtag      4020
     ttgcatactt cagtaagaag ttaagcagaa cgcaaagggc atattcaagt gttgagaagg      4080
     aatgcctggg agttttgcta gcaatcgaga atttccgaca ctatgtggaa gggtcacgtt      4140
     tcaaggttgt tacggatgca cgaagtcttt tgtggctgtt cacgattgga gttgagtctg      4200
     ggaactcaaa gctcctccga tgggcattga aaattcaatc gtatgatatt caactggaat      4260
     accgcaaagg ggcgagtaat attactgccg attgtctctc acggtcggta aatctcctgg      4320
     atttatcctc tcaagatgac gagtatgaag aactggtcga aaaggtccag gctgaaccgg      4380
     acaaatttgc tgattaccgc gtcacggatg ggaacgtttt tagatacttg aagagtacga      4440
     atcgattaga ggacggtcgt ttcagatgga agttgttccc acggaacaag gaacgagctg      4500
     aaatccttag gaaagaacac gacgtagccc actttgggtt cgaaaagaca cttcaaaacc      4560
     ttaaacgtcg ttatttttgg cctggaatgg ccaaagacgt aaggaaattt tgccagagtt      4620
     gtttgaagtg ccagacttcc aaagcaggaa atgtaaatgt tacacctcca atgggagctc      4680
     aaaaggagtt cgtagagcat ccctggcaat tcgtaaccct agattacgtc ggtcctctgc      4740
     ccccatcagg aaagggcaga catacatgcc ttctcgttgc cacagatgtc tttagtaaat      4800
     ttgttctaat ccaagctttc cgggaagcta aagccagttc gttaatagaa ttcgtaagaa      4860
     acatgatctt cctacttttt ggagtaccgg aagtgatctt aaccgataac gggacacagt      4920
     tcacgtccaa agcctttcgt gatcttctag cggaatatgg tgtcaaccat tggctcaccc      4980
     cttcgtatca cccacaagtg aataatacgg agagggttaa ccgtgtagtc acgaccgcaa      5040
     ttcgagcaac catcaagcaa caccgagact gggcagataa tcttcagacg attgcttgtg      5100
     caatacgtaa tgcggtgcat gaatcaacaa agtacacacc atacttcgtt gtattcggca      5160
     gggaaatggt atcagatgga caggagtacc agaaaatgcg gcaagcagat tcaggtgact      5220
     caatgcaaca accgttcggt tctggtagaa gggagaaact gtatgcggag attaaacagc      5280
     accttgcaaa agcctatgaa cgccataaac gcacctataa ccttcgttcg aattcggagt      5340
     gcccgacata taccgcggga gaaacggttc tgaagagatc atttgaacag tctagcaaat      5400
     ccaaaaactt ctgtgcaaag ttagccccga agtatgaact cgccgtagtc aggaagatac      5460
     tcggaaaaca ctgctacgag cttgagaatc tacaagggaa acggctgggt gtcttttacg      5520
     gaagtcacct caaaaagatg cacccgccga cctagacgta tttttcttca gctatgaacc      5580
     tcttcggagt gaccacttag ttagccaaaa cacctacggg ttcattaaaa ctcctgtcac      5640
     taaggtgact tacaacgttt tccagctatg tatagtgaga gacaacttct tacaaacacc      5700
     tacggggaat gtcgtacgtt gtacagtcga cctcacagca gggacataat tgacaatcac      5760
     ctaaaacagt taattgaaga gtgtcacctg ggcgatgaat tctcattgaa gtaacaagaa      5820
     ccatgaatca tagaaagagc tgggtgatga cctgactgag agtagtgaca ccatgaagtc      5880
     tatagtgagc ccagtgatga tttccgattc tctgtaccta gtactgagtt agtagtggtt      5940
     cttgccaagc ctaggaagga gcccatgatg gacctcgaac gtcaaatgac aaatttaggt      6000
     gggttgtgaa tcgctcagct gtgtgatgaa tcgacttaca acacaatctc acatggaaaa      6060
     gttcgaagga cggtttgaac aagctatgcc acttcccctg aagcaactaa ggtagttcca      6120
     aagaaaaact tcccacgaaa acacttttca aaggcaaaaa aatcattcaa ataggtagca      6180
     gagacaacaa attactctcc cttgtaaata ttgtacatag ttagtgatta gtccgcgcct      6240
     aacgcctacg gtaatactag aattatttct taagattact attagttaga taacgtcttc      6300
     aactcacatt tccaataaga tttgccgtgt tttcgttctt caatgtaatc tcgttcctta      6360
     gttgcataat ttcccatcat atttgtccaa gcttgtagtc cttctttatc gatagtgcag      6420
     ttgttttcat tccatccatt gttgttgatt atcattccgt tcatcgtcag gttccttgtg      6480
     gtttattttc gtccgctttg tatgtctagg tgagcgaggt tgtagtttgc tgtccagttc      6540
     gaaatcttcc atagtataat ccaacttgtt tcccgtttgt gcatcgctag acccaagttc      6600
     caattagaat tttccattcg ccatcttctg attgtaccaa gaaatgcttc ccatgacttc      6660
     gacctaaaat tagacaaaaa tagccctccc acaatatccc caacagttct tttagaaaaa      6720
     catcaagcga tacagtttag ttaatacttt ccgcaacaat aaaccgctct ttagtccttc      6780
     tcatcttcac ttttgtcgga ttttgccagc gaaatttaat tttcgtcttg cagtgtttac      6840
     tttttttttc acttgtttga catttggtta gtttcagtcc gttctgttgg cagcgcaatg      6900
     agtgggtgag ttgcaaggga gtgagtgacg attcgttccc ggagtgaccg ttcgaggggt      6960
     gattcattgt tgtttgtgtt attgtacgtt ctcgtaatat ttcgcaagaa gtattagcga      7020
     cgaagcttaa tatttatgtt gtgttgtggg aaacgttttc ggacattaat gtctggagtt      7080
     gtttgtcaca acggatgtca ttgtttgtga agaataaata caatcatata cctgagtaac      7140
     atacttggga agattatatt taggattcac tagttgtcat gtttaatgtg gaaagtgagc      7200
     gcaatcataa attcggaaca ggttctggag tggattgtcg ttcatgatcc acaagttcag      7260
     tgaagtttaa ggattctgtc ttagtattcg gtctcgaaga ctggagttaa agatagatat      7320
     ccaagtatat gtttacttct ctggagttgc ggccgactcc agatgcaagt atatttcatt      7380
     gtttcgtttt aagatgtgta tgtgtgtggg ttttgggagc gtctgccaac atgtttcttt      7440
     tcttaattta actccatagc tcaaacatat ttcatcaata gtcaacagtc attcgattgg      7500
     gaatcagcat tagtttaacc ctacgaaaat ttgattgaaa ttctcaaatt tcaatcaaat      7560
     tttcgtaact ttagtagagg atgatgtaac atggtcattt ta                         7602
//
ID   Gypsy-220_AA-LTR repbase;    DNA;    INV; 1917 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-220_AA_;
KW   Gypsy-220_AA-I; Gypsy-220_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1917
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1044-1044 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1917 BP; 532 A; 384 C; 449 G; 552 T; 0 other;
     tgtaaatatt attttaagat ttattatagt attatagaaa tgtagataca tattgttgcg        60
     tatacagtca tttatttcct tcaatgtaat ttgttgttcc gtgtttaatt tatttttcca       120
     tttcaaacga taattctttg ataatttact aaatccaata agttcactaa atatttgcaa       180
     actcagtatc accacttcta aatgacatgc attattctca aatccgcata acttgcatgc       240
     aagttgcctt caaagttata gcaggataac tatcgttcac acgccgccgt agaatctgaa       300
     ttagctcgag gttcaaagtt caaatccgaa ccattctctc tttttatatg accggcaagc       360
     gaagataaaa caaaacgaga caagaccatc tagaaggtat gcgtatgaaa gggatgtagt       420
     tttgggcaag aacgatggga agattgatga gaatcgattg tttgaaaggt cgtcgaacta       480
     cttcgggagt ttgacgcact tccggccacg aagaccgtaa cattcaaccc tatctgagga       540
     tttcagggac ttctactcgt tcactttgac ttgaaccgtg gaagaggcga gagtgcgcgt       600
     agttagtact taagtgtacc ttgtgtcgcg gtgtgtttaa tgtggtatgt gatttatcaa       660
     acgtgagaag tctttaagat taagttattg ttcaattctt gttcctttcc gtgtagcctt       720
     agtcaacgat aggtcaaaaa gttacgtgcg gtctattttt ttgtgtgcgt atagtgtata       780
     aagaaggtaa attgaatcgt cttttttttg tgtggaaatc attaattaat tattaattaa       840
     ttgcgtcgaa aaagccgatc gacggcttct tgtgtgaaat cgcttctagc gatagaaaac       900
     ctgctcggca caccgcccgt tttcgtcaag cgcattttcg accccacgct tcaacgtcga       960
     aggtcccggg tcgggggaga ttccggaagg gagacgttta tctccgacag agcgaaaggt      1020
     ccaacacgct attttccgcc acgtgtggac cattgaacgg atcgacggtc cccacgtcga      1080
     ttatttgcac caaccgtcac ccgcgtgcaa atcgcagcag aagtcgagaa gccaactggg      1140
     agtgcaacgc gcaatacttc gtccggcgag atgctgcttg gccgacgacg ataatgcaga      1200
     acacggtacc gtgagtagaa caaaaagcat gcttatttcc acacaccaac actgagctcg      1260
     aagacagacg ataaacctta gcaatcgcta gaaccgttag ctaggaaacc gcacacaagt      1320
     taggctagga agcagaaaga gagagagaga gagagagaga gagagagggg gagaggaaag      1380
     gaaccaccat gaataaaccc tagggtacaa atccatgcaa taaatgttta aggtctcgtt      1440
     ttttcctgaa taaatgtgtt tctgttagtt tagttcatgt agcaataatt ttggtccgaa      1500
     ggatttctca tgtttttcgc gtcgttcttg tagttttttg ttgattgttt tactccaggt      1560
     tgggctgcct gggaaatcag cctcagcact cacgtgtcgg aaacggacga gaagatttga      1620
     acagtgagtt cctcccgtga tgagaaatac gtgagtggtg tttttgtggt ttttcggtag      1680
     aacgacggtt agcaccagtt ttcccttcag gaccgtttgg agcatgatct ttttcagccg      1740
     tactcgatag gtggtcagaa tcgttccgat attagctaat aacctaaaaa cccgccctga      1800
     ggttgggttt ctgccgggca acctaaactt gacggacagt cctctttgag gtggcgctta      1860
     agctgtccgt tttttcgagc tagaccacgt gtagagaacg agcggagcgt agccgca         1917
//
ID   Gypsy-221_AA-I repbase;    DNA;    INV; 6948 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-221_AA_;
KW   Gypsy-221_AA-LTR; Gypsy-221_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6948
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1045-1045 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5179-5655] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           427..2709
FT                 /product="Gypsy-221_AA-I_1p"
FT                 /translation="MDLQSAYRHMDVSHLAIDEVEHELLIRNMLFHFDDHD
FT                 SVKRRKLKDRMKEERNMGINSTAFARTWRTAQEEIEIVRSRIQIIRGIFEN
FT                 PKADARQKQKLRTRIIHYRVRISQLARATDARKYLQQISDIEDQIDEIMAT
FT                 HFDAMNSESDKTKAVPLDEKITEVLGEVRTEIATLNDTVATLEGGDEGGEL
FT                 EQASGGAMSVIKQKKHEIELSKKRADEILQKLNEYEPGKEKEFEHLISAFK
FT                 DFVVHTSEQQRLKREQEIVTERQRLEEMASRIKRKQNLEKLLTELNENLSQ
FT                 SKNGSTIMLNTSNASPSDRSSTSENENGMEQVELKASASSSKSGKADSGKG
FT                 NRRSVEFQKNVESSTESSGENYECARTSEKKGKMNKLRKRDSIRSIMKKSR
FT                 KKTVRSSTSSEQTFSTDSSESSESLSSSSSCSMSSTEEERKKKKRAKKHKR
FT                 ARKSIKRIPVAEWRLKYDGKDDGRKLAEFLKEVKMRSRSEDISDRELFRSA
FT                 LHLFTGRAKDWYIDGVDNGDFRNWSELKRELKREFLPPDLDFQLEIQATNR
FT                 RQSRGERFCDYSHDMQKIFQCMTKQLSERRKFDLIWRNMRHDYKNALTGAG
FT                 IRSLSKLKKYGRKIDENFSFLQKQNDTRARPNQVSEITSNREKGNSGNSGN
FT                 NTRVFTNSKNQSKPKLSGEGKEEQPPKVGKESGKGRVEEKTQPMEGSSTGT
FT                 MLAIAEQYRRPPIGTCYNCRTHGHHYVECPEPRYKFCRICGFQDVFTSACP
FT                 VCQKNIKGSA"
FT   CDS           2673..5234
FT                 /product="Gypsy-221_AA-I_3p"
FT                 /translation="MSSLSKKHQGVSLRRQVDLDLENPPTLKQMAQTLTSY
FT                 GLEPISATDYDIAHDLNEIFVHIQGDGRPFAKVNVMGVEILGLLDSGAQRS
FT                 VLGTGAEKLIRTLKLKIYPTPASVRTAEGKDVPVKGLVHLPITFHNQTRII
FT                 PTLVAPELRRRLILGFEDFWRAFHIRPTLLGEEGLVRVDEVESTPGNSIEE
FT                 STHDLTDEQRAQLETVKTLFKVAIDGETLDVTPLITHKIELREEYRSSPPV
FT                 RINPYPTSPEMQRKINQEIDKLLSQKVIEKSNSDWSLSTVPVVKPSGEVRL
FT                 CLDARRLNERTQRDAYPLPHQDRILSRLGASKFMTTIDLTKAFLQIPLDCH
FT                 SRKYTAFSVVGRGLFQFTRLPFGLVNSPASLSRLMDEVLGYGELEPNVFVY
FT                 LDDIVVVSDTFEAHLCTLREVAKRLQAANLSINLQKSKFCVTELPYLGYIL
FT                 TPEGIRPNPDRIDAILNYERPSSIRALRRFLGMANYYRRFIASFSEMSAPL
FT                 TNLLKKKPKCLIWNNEAEQAFIRLKESLISAPILSNPNFSLPFQIQTDASD
FT                 NAIAAVLSQEHDDGEKVIAYFSQKLTPAQQSYAATEKEGLAVLSAIEKFRP
FT                 YIEGMHFTVLTDASALTYIMNGRWKTSSRLSRWSIDLQGYDFDIKHRRGRD
FT                 NIIPDALSRAVEVLEITVTDWYQDLLNKVKANPEENLDYRIESDKLYKFVP
FT                 TKTDVFDYRYEWKLARGAPPARRARPRRGARPRPAAAGRPGGPARPPPGRA
FT                 PGAPAAAARPPPRLHTRGASKGNSRKRARIRISHRVREVVGQAETKIFLAQ
FT                 HGSVGQEICSKLSTVQRIQTGERFTAPRNGKTAPHHKTFSDPLNGLYPVLA
FT                 A"
FT   CDS           4783..6054
FT                 /product="Gypsy-221_AA-I_2p"
FT                 /translation="MFSIIGMSGNSPAGRRRRAARARAAARGRAPPPPGAP
FT                 AGRRARPPAGRPGPPPRRRGRRPACIPEALRKEILEKEHVSAFHIGYEKLL
FT                 DKLRQRYFWPNMAQSAKKYVQSCQQCKEFKPANVSQHPEMGKQRLTTKPFQ
FT                 ILSMDFIQSLPRSKTGNTHLLVLMDMFSKWTMLFPVKKIASEIVIRLVEQH
FT                 WFRRYSVPEILITDNASCFLSKEFKTFLDRYHVQHWANARHHSQANPVERL
FT                 NRNINACIRTYVKSNQRLWDTRISEIEYTINNTRHSSTGFTPYRILFGHEI
FT                 VADGVEHRLDADTEHLSEKERMEQKLKIDHSIFDTVYKNLERAHEKSTRSY
FT                 NLRFRKAAPVYEVGQKVFRRNFAQSSAGEAYNAKLGPMYIPCTVVARRGTS
FT                 SYELMDSTGKNVGIFSAADLRPGNAEERDS"
XX
SQ   Sequence 6948 BP; 2147 A; 1455 C; 1650 G; 1687 T; 9 other;
     attggcgccc agcttaaaga aaagcgatac tgatcagaag ttcaamggga gtgagattgc        60
     ttagggagca gatattttgc gatagctagc gaaaaataac cttcatttgc tcggattggt       120
     gagtaggtag ggtacttgat ctgtgtagtg cgagccacac tttccgcaga gatcactgag       180
     agagctgtgc ttctactagt gcgcgaacgt cgtttagagt aattaatttg ataaaaagcg       240
     tactaaatag ttgcgcgcga atcaatttta ggtatttttt ctaatttttt tttcattaat       300
     gggtcttgac tcaaccaatc acaactaggt aattaacaaa ttttgaccaa cgttatctct       360
     cgattctgtg agaatacaag aacatttttc gattggcaag tgtgactgta gtggaaaagc       420
     cttgcgatgg atttacagtc ggcttaccga cacatggatg tgtcccatct cgctatagac       480
     gaggtggaac acgaactctt gatcagaaat atgttatttc attttgacga tcacgatagc       540
     gtaaaacgac gaaaattaaa ggataggatg aaagaggaga gaaatatggg cataaattct       600
     acggccttcg ctaggacgtg gagaacagcc caggaagaga ttgagattgt gagatcccga       660
     attcagatta ttcgtggaat ttttgagaat cccaaagccg atgccaggca aaaacaaaaa       720
     ttgagaaccc gtatcatcca ttaccgcgtg agaattagtc agcttgcgag agctactgac       780
     gctcgcaagt acctacaaca gattagtgac atcgaagacc aaatagacga gatcatggca       840
     actcattttg atgcaatgaa ctcggagagc gataaaacca aagcagttcc attggacgag       900
     aagataacag aggttttagg agaagtacgc accgagatcg caacgttgaa cgatacggtt       960
     gctactctcg aaggtgggga tgaaggggga gagttagaac aggcaagtgg aggagcaatg      1020
     agcgtcataa aacagaagaa gcatgaaatt gaactttcga agaaaagggc agatgaaatt      1080
     ctacaaaaac tgaatgaata cgaaccagga aaagaaaagg aatttgaaca tttgatctct      1140
     gcatttaagg actttgtcgt tcatacgtct gagcagcaga ggctcaagcg agagcaagaa      1200
     attgtaacag aacggcaaag attggaggaa atggcctctc gtattaaaag aaagcagaat      1260
     ttagaaaaac tcttgactga actgaatgag aacctgagcc aatctaagaa tggttccact      1320
     attatgttga acaccagtaa cgcgtctcca tcagaccgtt catctacatc agaaaatgag      1380
     aatggaatgg aacaggtcga attaaaagcc tcagcktctt ctagtaaatc tggaaaagct      1440
     gattcgggaa aaggaaatag aagaagtgta gagtttcaga aaaacgtaga aagttcaacg      1500
     gaaagctctg gtgaaaatta tgaatgtgct cgaacttctg aaaagaaagg aaaaatgaat      1560
     aagctgagaa aaagagatag catcaggtcg ataatgaaga agagtaggaa gaagacggta      1620
     aggagctcca cttcgtctga gcaaactttc tctactgatt cctcggagag ctcagaatct      1680
     ttgagttcga gttctagttg ctctatgagc tcaaccgagg aagaaaggaa gaaaaagaag      1740
     agggcgaaaa agcataagag ggctagaaaa tcaataaaaa ggatcccagt agccgaatgg      1800
     cgacttaaat atgatggtaa ggatgacggt cggaaattgg ctgaattttt gaaggaagtc      1860
     aagatgcgat ctagatctga ggatatttca gatcgagagc tgtttaggtc cgcgcttcat      1920
     ttattcaccg gtcgtgccaa agattggtat atcgatggtg ttgacaatgg ggatttcaga      1980
     aattggtcag agttgaagag ggagttgaaa agggaatttt taccccccga tcttgacttc      2040
     caactagaaa ttcaggctac caatcgccgc caatcccgag gggaaagatt ctgtgattat      2100
     tcccacgaca tgcagaaaat tttccagtgc atgaccaaac agttatcgga gagacgaaaa      2160
     tttgatttaa tctggcgcaa tatgcgccac gattacaaaa atgctttaac gggagcaggg      2220
     atcagatccc taagcaaact gaaaaagtat ggcaggaaaa ttgatgagaa tttcagcttt      2280
     ctccaaaagc aaaacgacac tcgggctagg ccaaaccagg ttagcgagat cacgtccaac      2340
     agagagaaag gcaatagcgg taactcaggg aataataccc gagtttttac gaatagtaaa      2400
     aaccaatcta aaccgaaact atctggagag gggaaggagg aacaaccacc caaggtagga      2460
     aaagagagtg gtaaggggag agtagaggag aaaacccaac cgatggaagg gtcttctacg      2520
     ggtacgatgc tggctattgc agagcaatac cgtagaccac ccattggcac gtgctacaat      2580
     tgccgaacac acggacacca ctatgtcgaa tgtcccgagc caaggtacaa attttgtcgt      2640
     atttgtggtt ttcaggacgt ctttactagt gcatgtccag tttgtcaaaa aaacatcaag      2700
     gggtcagctt gaggaggcaa gttgatttag acctcgaaaa ccctcccact ctaaagcaaa      2760
     tggcacaaac cttgacctca tacggcttgg agcccatttc agctaccgat tacgacattg      2820
     cacacgattt aaacgaaatt ttcgtccaca tacagggaga tggtagacct tttgccaagg      2880
     tgaatgttat gggagtagaa atactcggcc ttttggacag cggagcccag cgatcagtat      2940
     tggggaccgg tgccgaaaag ctcattagaa cattaaaatt gaaaatttat cctactccgg      3000
     cttcggttag aacggcggag gggaaggacg tccctgtaaa aggtctcgtt catctgccta      3060
     tcacttttca caaccagact cgtatcattc ccactctggt ggcgcccgaa ctccgaagga      3120
     gactcatttt gggtttcgaa gacttctgga gagcatttca tatacgacca actttgctag      3180
     gagaggaagg actggttaga gttgacgaag tagagagtac cccgggaaac agtattgaag      3240
     agtccactca cgatctcaca gatgagcaaa gagctcagct cgagacggtg aaaacactct      3300
     ttaaggtagc aattgacggt gagaccctcg acgtcacacc cttgattacc cataaaattg      3360
     aactgaggga agaatatcgg agctctccac cagttcgaat caatccttac cctacctctc      3420
     cggagatgca gmggaaaata aaccaagaaa ttgataagct cttatctcag aaggtgatcg      3480
     agaagagcaa cagtgactgg tctctcagta ctgtgccagt ggtcaaacct tctggcgagg      3540
     taagattatg cctagatgcc cgtcgtctga atgagcgaac acaaagggat gcctatcctc      3600
     ttccccacca agaccgtata ctgagtcggc taggagcaag taaatttatg accacgatcg      3660
     atttaacgaa agcctttctc cagatcccgc tcgattgcca ctcacgcaag tatacggcct      3720
     tctcagtggt ggggagagga ctgttccagt ttaccagact gcctttcggt ctagtaaata      3780
     gtccagcaag tctgtcacga ctcatggacg aggtattggg ctatggtgaa ctggaaccga      3840
     atgtgttcgt ttacctcgac gatatcgtcg tggtaagcga cacattcgag gcccaccttt      3900
     gcactcttcg cgaagtagcc aagaggctac aggctgcgaa cttatccatc aacctccaaa      3960
     aatcaaaatt ttgcgtgact gagttaccct atttgggtta catactaaca cctgagggaa      4020
     ttcgcccgaa cccagacagg atcgacgcta tactaaatta tgaacgtcca agctcgattc      4080
     gggccttgcg ccgatttttg ggcatggcaa actattacag gcgatttatt gcctctttta      4140
     gtgagatgag cgcccctctc accaatctgc tcaaaaagaa acccaagtgt ctgatatgga      4200
     ataatgaagc cgaacaggcg tttattcgtt tgaaggagag tttgatctca gctccaattt      4260
     tgagcaatcc gaatttcagc ttacctttcc aaatacagac cgatgctagc gataatgcga      4320
     tagctgccgt gctgtcccaa gagcacgatg atggtgagaa agtgattgcg tatttttcgc      4380
     aaaaactgac tcccgctcag caatcatacg cagcgaccga gaaagagggc ctggcggtac      4440
     tctcagccat cgaaaaattt cgaccatata tcgaggggat gcatttcacg gtgttgaccg      4500
     atgcgtcsgc actaacttat attatgaacg ggaggtggaa gacgtcatcc cgtctgagta      4560
     ggtggagcat tgatttgcaa gggtatgact tcgatatcaa acacaggaga ggcmgggaca      4620
     atatcatccc tgatgccctc tctcgagcag tcgaggtgtt agaaatcacg gtaaccgact      4680
     ggtatcaaga tttactcaat aaagttaagg caaatcccga agaaaaccta gattaccgga      4740
     tcgaatctga caaattatac aaatttgtac cgacgaaaac cgatgttttc gattatcggt      4800
     atgagtggaa actcgcccgc ggggcgccgc cggcgcgccg cgcgcgcccg cgccgcggcg      4860
     cgcggccgcg ccccgccgcc gccgggcgcc ccggcgggcc ggcgcgcccg ccccccggcc      4920
     gggcgcccgg ggcccccgcc gcggcggcgc ggccgccgcc ccgcctgcat acccgaggcg      4980
     cttcgaaagg aaattctcga aaaagagcac gtatccgcat ttcacatagg gtacgagaag      5040
     ttgttggaca agctgagaca aagatatttc tggcccaaca tggctcagtc ggccaagaaa      5100
     tatgttcaaa gctgtcaaca gtgcaaagaa ttcaaaccgg cgaacgtttc acagcacccc      5160
     gaaatgggaa aacagcgcct caccacaaaa ccttttcaga tcctctcaat ggactttatc      5220
     cagtccttgc cgcgtagcaa aactggaaac acacatttgc ttgttctgat ggacatgttc      5280
     tcaaaatgga cgatgttgtt cccagtcaaa aagatcgctt cggagatcgt tatccggctg      5340
     gtggaacaac attggttccg tagatattcc gtaccagaga tccttattac ggataatgcc      5400
     agttgcttct taagcaaaga atttaagacc ttcctcgacc ggtatcacgt tcaacactgg      5460
     gctaatgcac gccaccacag ccaggcgaac ccagttgaga gactgaaccg aaatattaat      5520
     gcatgtattc ggacatatgt caagtccaac caacggctct gggatactcg tatctctgag      5580
     atcgagtaca cgatcaacaa tacgaggcac tcttctacag gctttacgcc atatagaata      5640
     ctatttgggc atgagatcgt tgctgatggt gttgagcatc gtctcgatgc agatactgag      5700
     cacctatctg aaaaagaaag aatggagcag aagttgaaga tagatcactc aatttttgac      5760
     acggtttaca aaaacctaga aagagcccac gagaaaagca ctaggagcta caatttgcga      5820
     tttcggaaag cagctcctgt ctacgaagta ggtcagaagg ttttccgaag aaacttcgca      5880
     caatcctccg caggggaggc ttataatgcc aaattaggac cgatgtacat tccgtgcaca      5940
     gttgtggccc gtcgtggaac tagttcctac gagctaatgg acagtaccgg gaaaaatgta      6000
     ggaattttct cagcggctga tctcagacca gggaatgctg aggaaagaga ttcctaaatg      6060
     tagatactag atcataataa attggtaggt agtttgtagg aataatttct ctaatttgtt      6120
     atccctaatt gttcttcaag ttacatgtcg ttctacaatg tttcagagtt ccgtagttac      6180
     gttatttagt twggttttgt tamatttttc gttttkaaaa tgagataagt cctagagtat      6240
     gatgaagttc aaggtctgtc taattggtgt tcgattgtca tgtccagtgt agtagttatg      6300
     ttcacaawta tttgtatcac tgattctcgg atcagtttcg tctgaatttt aataggtttt      6360
     gctatccgac atcatagtac gcttaatcgg aggaaaactg atcaaggaaa attaccactg      6420
     gaaaatggaa aaattcgata agcaccgaaa agttttgaac gttcattttt cctatgatat      6480
     cagattgcga cacttcaacc attttccata caacctcact agatcaacac taataacatc      6540
     atgaaacccg ccatctactc gggttgcttc agtaacagtc acaatgccaa tggagttctt      6600
     gagttccact ttatcatgta cagctctagc caaatatggt aacattcggt cagaattctc      6660
     cctctcaatt gagttgagat taaggaagag gaagaccgat taatgagaga taagggtaga      6720
     gacgctaata aatggtatct tgtccaaaat ttgacaagat gattctattt agttaactta      6780
     gcttcgaatt atttactctt acggattacg aagattgcaa aaggcaagcc caaccctggg      6840
     agtacaactg tacagtgatt tactgaaata aattgaggaa aataagaata ttgcacatga      6900
     taaaataaat tgataaatca atttattttt acggggagtg tgaggtag                   6948
//
ID   Gypsy-221_AA-LTR repbase;    DNA;    INV; 1167 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-221_AA_;
KW   Gypsy-221_AA-I; Gypsy-221_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1167
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1046-1046 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1167 BP; 294 A; 273 C; 286 G; 192 T; 122 other;
     tgttaccgtt ttgggtactt taccctakga cccaactccg agcamatgag agaaaaccat        60
     tctgctatta gtcgtakaka gagggwactc aatctgttcg attgtacaca atattgcgta       120
     aaagtcgtct tgtatgccgg ggccggttta aagctccgat aakaaagawa aktcatggtc       180
     cactcccamm kccaactgtk ggtttaaaga aggawawggc aawtgtaacg ckcataacac       240
     akgwmacacm gmatacacaw amgsatactg gagtgggagg akcgaagtgg gcaatggaat       300
     aacgattgga agaatkgaag ggaggagcaa wkgagatggg gaawggagts tgsgaagggg       360
     gaaggkgggg tawggwwwkg ggtmtgccac gagggaaaac tggatcwggc cagtcttttc       420
     cacttgagac ttsaagcwgt csagacgtac agtaaagaaa cacaagtgtc ccagcgactt       480
     agggaacwta ttagaagcac cagtggtgat atagaccctg gwaskgtwta aawgmagtgg       540
     aagwkktgwg accacgccag ggaacccgtg agagtcaggt aacctaacca gtgaakaaww       600
     aagcggcmtw kswgwaccct aaaasctccc cacccctacg cmattcccwt taggacccat       660
     tawggtwtcg gctagggsck tcwgtggkck ccawacccwc cwkccattcc ggaggwcaca       720
     ccccgtggct atacactggg aagcmcgtgg tttgakmcgc twgtaggacc mgcgwasccc       780
     gwmgccccak cgccggcttg ctmasccacg tgggaacatm ckgcsatcgg kktgccscam       840
     gcccggaata gcagcmccac ggagcccagc aaaccatcca gcccaggmga cmacgascga       900
     tcccatagca ktgtwmgccc cgckggatcc accmkgwmgm ccctccmstg ccggccggcc       960
     ccctttacac atccacaccc acacacwsac acacmgtaag tgmaataaag agaaktgtag      1020
     ttaaaaswga agtcgawagt kkttggactt ctgatcagcg ctgagagccg accctgtaga      1080
     agaagagttt gggaacccct ggtggctagg cctgtaaggt ctcgtcccca gcgagcgtct      1140
     cgggtttaac ccwgtgagaa tataaca                                          1167
//
ID   Gypsy-222_AA-I repbase;    DNA;    INV; 7285 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-222_AA_;
KW   Gypsy-222_AA-LTR; Gypsy-222_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7285
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1047-1047 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4850-5326] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           510..2546
FT                 /product="Gypsy-222_AA-I_2p"
FT                 /translation="MELARLQSLYYALNAAHLADDELDHELQIRDVNMIGE
FT                 SRSKQERSLRSLLKAEKEGKAISFKPYWVTVVDELKWCDEKLLGVKKTLEE
FT                 RKSRKAPDQIFKTKLLHIFFRMERLKSHTKEEEDLNSIAIIAGVCTALLNT
FT                 FFSITSPLLEVREAETAILNETIRQMREEALENRAHSDRVVGASGIDHGNV
FT                 VGIGAGESGVDDHRRETGENENDEHDDNREQSRENEDDDGDDDAENVVGKL
FT                 SDENERLKVAVNQLLQRIQALESANATKQREIERIKQSTPVDDRSRQNVDE
FT                 QEQGQGQQNFYEWMKARCGSLESMVDVNKIISSSRTEKPNVRQRNEVDLPK
FT                 GSRLPVHKWSVRYDGTDNGRRLNEFLKEVEFNARSEGFTEAELFVSAHHLF
FT                 TRKARSWFMEVNGNNELGTWQNLVRELKNEFLPADIDYQYERLANSRRQGP
FT                 REKFQDFYLDMVRIFRSMSRQWDDARKFDVLFRNTRADCRTAMLAANVTSI
FT                 PKMREFGKRFDSINWQVYAKRENRFSRPNSQVEEINQQRQNWRGTESNVRN
FT                 QSDYKGGYQGRNFNPNYNPPNKQFPPGKPGFQGRNSEQKFPQKPKPRPESN
FT                 QQQNRQSDPKPSTSGTSALQRIVNAYIPIKRGVCFNCHDEGHNSKNCEQEK
FT                 HVFCENCGFPGFQTNNCPFCQSKNAKKTAQ"
FT   CDS           3623..5698
FT                 /product="Gypsy-222_AA-I_1p"
FT                 /translation="MDRVLGHGALEPSIFVYLDDIVIASQTFDEHLQKLED
FT                 LARRLREANLSINLSKSKFCCQELPYLGYILSQDGLRPNPDRVKAILGYQV
FT                 PKSVRQLRRFLGMINYYRRFIANYSEITAPLTDLLKNKPKRVPWNSAADTA
FT                 FEVIKEKLIAAPVMANPNFLLPFTVQTDASDNAIAGVLTQVQNGEEKVIAY
FT                 HSEKLKGAELHYHAAEKEGLAALRCIEKFRGYIEGTKFTLVTDSSALTFIM
FT                 RAKWRSSSRLSRWSIELQQYDMEIRHRKGKENIVPDALSRSIEALDEEPED
FT                 GWYKKLYAAVEDDPEKYLDFKIKDGVLYKFVAAKSDMLDYQFEWKQCVPTS
FT                 NRSQILKQEHDENLHIGFSKCVEKIKQRFYWPRMSADIKKYIGSCESCKEN
FT                 KHSTVSTAPEMGKQRVANRPFQIICMDYIQSLPRSKQGNAHLLVVMDLFSK
FT                 YCLLAPVKKISTVSLCKILEEQWFRRLSVPQIVISDNATTFMSRDFQNLLE
FT                 KYEVQHWANARHRSQANPTERLNRTINSMIRSYVKQDQKLWDSKISEIEFV
FT                 LNNTIHSTTKFSPHCVIYGHEIICKGPEHKQDCSDQLSDEQRVERLRGVNK
FT                 KVGELVREHLKKAHEDTKKRYDLRHKRYSPTFDVGQRVYKRSFRQSSAGDQ
FT                 FNAKLGPQYMPCTIVRKVGTSSYEVSDQQGKSLGIFSAADLKA"
XX
SQ   Sequence 7285 BP; 2259 A; 1350 C; 1719 G; 1939 T; 18 other;
     ctttggcgcc caacataaaa ttgacttacc atcagtttgt tgtaggctca gtttggaaat        60
     tcgcacttga gatagctggt ttctaccgaa gtctctggga aaacatccag gccttcacag       120
     gacagttgcc attttgggct tactcctttt atctgacaca gagcgggaaa ttatttcatt       180
     ttgctaccga ggggttctga ttgtccattg atcagtaaca aagaacgatt gtttaaaaag       240
     tgaatcggag tgcttttgaa ttgaaaggag cgaagtgtgg aatcgtgtgg tgtgattcgg       300
     aaggagtaat tgaaaacacg agaaagaatc gtaatttatt tgcggattcg tgaactagga       360
     ttttcaaatt taggcttttc aattttagga tttcaaattt agaattttca attttttttt       420
     cagcgtgcaa aaccgcttct tacaaatcta ggtagttctt tttaaatttt taattttcta       480
     attttgctgg aagtacgcaa acgtgagcga tggagttggc acgattacag tcgctgtatt       540
     acgcgttgaa tgctgcccat ctggcggatg acgaactcga ccatgaactg cagatccgtg       600
     acgtgaacat gattggtgaa agccgaagta agcaggagag atccttacgt agtttgttga       660
     aggctgaaaa agagggaaaa gcgattagtt tcaaaccgta ttgggttaca gtagtagacg       720
     aactgaaatg gtgtgacgaa aagcttttag gagtgaagaa aacgttagag gaaaggaaat       780
     cgcgaaaagc acctgatcaa attttcaaaa ctaagcttct tcatattttc tttagaatgg       840
     aacgactgaa gtcccatacc aaagaagaag aagacttaaa tagcatcgca atcattgcag       900
     gagtttgtac cgcgttgtta aacacgtttt tctcaatcac ttctcccctg ttagaagtga       960
     gagaagcgga aacggcgata ttgaatgaaa ctattcgaca gatgcgtgag gaagcactag      1020
     agaatagagc acactctgat agagttgtag gagctagtgg aatcgatcac ggtaatgtag      1080
     taggaatcgg tgcgggtgag tcaggagtcg atgatcatag gagagaaacg ggtgaaaacg      1140
     aaaatgatga gcatgatgat aaccgagagc agagtagaga aaatgaggat gatgatggtg      1200
     atgatgacgc ggagaatgta gtaggaaagc tttcggatga gaatgaacgt ttgaaggtag      1260
     ccgttaatca gttacttcaa cgaatacagg cactcgaatc tgcgaatgcg acaaagcaga      1320
     gagagattga gcgaattaag cagagtacgc cggtagacga tagatcgcga cagaatgtag      1380
     atgagcaaga gcagggtcaa ggtcaacaaa atttttatga atggatgaaa gctagatgcg      1440
     gttcgttaga gagtatggtg gacgtaaata agattatttc atcgtcgcgt actgaaaaac      1500
     cgaacgttag acagagaaat gaggtcgatt tgccgaaagg tagtcgattg ccggtacaca      1560
     aatggtcggt gaggtacgac ggaactgaca atggtaggag actgaatgaa tttcttaagg      1620
     aagtagagtt caatgcaaga tcggagggtt tcacagaggc tgaattgttc gtgtctgcgc      1680
     accacctctt tacgcgaaaa gcaagatcgt ggtttatgga agtcaatggg aacaatgagt      1740
     taggtacgtg gcaaaatcta gtcagggagt tgaaaaatga attcttacct gcagatattg      1800
     actaccagta tgaacggttg gctaattcgc gaaggcaggg tccaagagag aaatttcaag      1860
     atttctactt ggacatggtg agaattttcc ggagcatgtc caggcaatgg gatgacgcca      1920
     gaaaattcga cgtactgttc cgaaacacca gggcagattg taggacggca atgttggctg      1980
     ctaatgtgac atccattcct aaaatgaggg aatttggtaa acgatttgat tccataaact      2040
     ggcaggtata tgctaagagg gaaaacagat ttagtagacc aaattctcaa gtagaggaaa      2100
     ttaatcagca aagacagaac tggagaggta cggaatccaa cgtcagaaat cagtccgatt      2160
     ataaaggggg ttaccaggga cggaatttta atccgaacta taatccccct aataaacaat      2220
     ttcctccggg aaagcccgga tttcagggaa gaaattcaga acaaaaattc ccacaaaaac      2280
     ctaaaccaag accagagagc aatcaacaac aaaatcgtca gtccgaccca aaaccttcta      2340
     cgtcaggtac aagcgcactt cagaggattg tgaatgccta cattccaatc aaacgtggtg      2400
     tgtgctttaa ttgccatgat gaaggccaca attcaaaaaa ttgtgagcaa gaaaaacacg      2460
     tcttttgtga gaactgtggt tttccaggct ttcaaacaaa taattgccct ttctgccaat      2520
     caaaaaacgc caaaaagact gctcaatgag gcagagcagt cctattgatt ccgtaagtcc      2580
     tcagattcac gtagaggatc cagaagctat tcttcatcag ttggggtatt cgaaagtggt      2640
     tgaacaaccc aaaaagagag acgagatcgc aactttgctc gtcaaactta gtggagatgc      2700
     aaggccattt acgaagatcg aactgatggg gattgagctg attggtcttc tggacagtgg      2760
     agctgcacgg acggttttag gaatcggagc gagaaaaatc attcaaaaac ttaatctgtg      2820
     tgtcaggcca gctgtagtta atttgacaac tgctgctgga gaagatttag aggtccttgg      2880
     atgtgcggac attccgatca cattcaacgg gaacacaaaa attttacccg tgctaatcgc      2940
     tccgaaactt aaccggagat gcgtgctagg gtatgatttc tggctaaaat ttggaattac      3000
     gccagccata cggagtcaac ctatcgagct tttagatgat ggtgttagtg aggagctaga      3060
     aaaggaagaa gagttaacgg atgagcagaa agagaaatta gagaatgtga aaaagctatt      3120
     tttagtcgca gagccaggaa agctaggaat gactgattta atcgtccata aaatcgagat      3180
     gaaagaggag tacaaggatg ccgacccggt taggaagaat ccttatccgt ggagtccgga      3240
     aattcaacgg aaaatacatg gagcggttga caatatgwtt caggaaggkg taattgaaca      3300
     gtctgattcg gactgggctt taccggtagt accagttgca aaacgggata gtcaggaagt      3360
     taggctgtgc ttagacgcca gaaaactgaa tgaaaggacg aagagggatg catatccgtt      3420
     accgcaccaa aaccgaatct tgagtcattt gggacaggta aaatacctaa cgacaattga      3480
     cctatcacag gcgtttctcc agattccatt gagccctgag tcgcgaagat acactgcctt      3540
     ttctatacca ggtagagggc tgttccaatt tacacgactt ccgtttggat tggtgaacag      3600
     tcctgctacg ctgagcaagc taatggaccg tgttttaggc catggcgctt tagaaccgtc      3660
     aattttcgtt tatttagacg atattgttat cgccagccaa acttttgacg agcatcttca      3720
     aaagcttgaa gatcttgcaa ggcgtttgcg tgaagcaaat ttaagcatta atttaagcaa      3780
     atccaagttc tgttgccaag aattgccgta tcttggatat attttatcgc aagatggatt      3840
     acgacctaat ccagatcgtg tcaaagcgat cttagggtat caggttccga aatcggtgag      3900
     acagttaagg cgtttcctcg gtatgataaa ttactaccga aggtttatcg cgaactatag      3960
     tgagattaca gcacctctca ctgacttatt gaaaaataag ccaaagaggg tgccatggaa      4020
     ctcagcagca gacacggcat ttgaggtcat caaggaaaag cttattgcag ctcctgtgat      4080
     ggccaaccca aactttttgc ttccattcac ggtccaaaca gacgcaagcg ataacgcaat      4140
     tgcaggtgta ttgacgcagg tgcaaaatgg ggaagagaaa gttatcgcct accattcgga      4200
     gaaactgaaa ggtgcagaac tacactacca cgcggcagag aaggaaggac ttgctgcgct      4260
     tcgttgcatc gaaaagttca ggggctatat tgagggaaca aagttcacct tggtgactga      4320
     ctcatcagcc ctaactttta taatgcgagc aaagtggcgg tcctcttctc gactcagtcg      4380
     ctggagtata gagctgcaac aatacgatat ggaaattcgg catcgtaagg gcaaggaaaa      4440
     cattgttccc gatgcactct cccgttccat cgaggctctc gatgaagaac ctgaggacgg      4500
     gtggtacaag aagttgtacg cagctgtaga ggatgaccct gagaagtatt tggacttcaa      4560
     aatcaaggac ggtgttcttt ataagttcgt agctgccaaa tcagatatgt tggactatca      4620
     gttcgagtgg aaacagtgtg ttcctacttc gaaccgtagt caaatactga agcaggaaca      4680
     cgacgaaaac ctccacattg gattctccaa atgtgttgag aaaattaaac aacgctttta      4740
     ttggcctcgc atgagcgcag atattaaaaa gtacatcggt tcatgtgagt cctgtaaaga      4800
     gaacaaacac tctaccgtgt caaccgcacc tgaaatggga aagcagagag tcgcaaatcg      4860
     cccattccaa attatttgca tggattatat tcaatctctt cccagaagca agcagggcaa      4920
     cgctcactta ttagtggtca tggacctgtt ctctaagtat tgcctgcttg ctcctgtaaa      4980
     gaagatatcg actgtatccc tatgcaaaat tttggaagag cagtggttca ggcgtctctc      5040
     cgtaccacaa attgtaatct ccgacaatgc gaccactttt atgtcgagag attttcaaaa      5100
     tctgctcgaa aagtacgaag tacaacattg ggcaaatgcg cgccacagaa gccaagccaa      5160
     tccaactgaa cgtctcaatc gaaccattaa ctcaatgatt cgatcgtacg tgaagcagga      5220
     tcagaagctt tgggactcga aaatatckga gattgaattc gtgcttaaca acacgattca      5280
     ttcaacgacc aaattcagcc cacactgcgt gatttatggt cacgagatca tttgcaaagg      5340
     tccagagcac aagcaggact gcagtgatca actgagtgac gaacaacgtg tggagagatt      5400
     gagaggagtt aacaagaagg tcggagagct agtgagagaa catctcaaaa aagctcacga      5460
     agacacgaaa aagcggtacg atcttcgcca taaaaggtac tcacctacgt ttgatgtggg      5520
     tcaacgcgtt tataaacgaa gcttccgtca gtcgtccgct ggggatcagt ttaacgcgaa      5580
     actgggtccg cagtacatgc cttgtaccat cgtcagaaag gtcggcacga gctcttacga      5640
     ggtgtccgac caacagggaa agtcactcgg catattttct gctgctgact taaaagcatg      5700
     aagaacctaa aaacataaat tttcatcaga gctagcataa aaattttaac gtcttattag      5760
     tcggtgttag atagtgagtt aggtagtatt tttgttcaaa gttcgtctca aagtacttat      5820
     cgtctcctac taagtcatac cgatgaattt tcccgggaaa ccattgcgtg ggtgtattga      5880
     atgagttcgt ccagcaaatc tgtagatttt gtatatagat acggccgtat agtcaagaaa      5940
     tttgcatgtt tacctagaat tttaaaagta gttgttgtta tcaattggtc aagttttatt      6000
     ttgtttcttt taattcgtta tttgtatgag taattatgag tcgaagtcga aaaagcataa      6060
     atgcatcgta tgtgttttat gtatgtccma cttgtcttgt acgcaaagtt gcaaacaagt      6120
     ttttaacttc gtcatagtca agtagtgaac aagtcgttga tgtgtaggag taattggatg      6180
     tcgtgtgtag tcattagggt caagttcaag gtcaagatca tctgattgag aatccacamt      6240
     tattcatatc aaaaatttac attaattcat ctcacactat aaagcattcg tttcacccat      6300
     acttacaccc tgagaagaac taagaatcaa cgttaaatga gcttttagaa aggaatcccc      6360
     agatggaaaa atacgaaaat tagcacaaaa attgatcaaa tggccatwta agaatccgcg      6420
     gatttaggaa aaagatattt aaagttttcg ttgagctcac tttccagcaa ttcctttata      6480
     aaaccacatt atcaccgaaa cccacatgtg atcaccaaat ctgcagcatc actttgacag      6540
     acatttgaca gattttccga tcttcaccga agccacacac accgataagg cactgatcaa      6600
     accgttatcg ttacacgaag tagtagaacg ttcgcgactc cgacaaatcg cgtgaaatgt      6660
     ttcatgcacc attcgcatga ccttactatt gtgtatgtat gctccagttt tttttttttt      6720
     attcaatttt attttgtatt tttaattcgt tttgcatgtt ttaaattata tatagtaaat      6780
     ttcttaaatg tctttttaaa caatcgtgtg gaataaaatg cttawtgtwt mgaggttacc      6840
     wggcctagtg aaaccctgwg tatttgatcg ctggagaccg gagtcagwag acgttgatgg      6900
     tcagtacwga cttaatgtca ctaaatagcg aggagttggt twagtccgac gatgaaaacc      6960
     tatgaccccg atactcgatw acmatamtwg ccaatttcac atctttttac tgtcatgtgg      7020
     gtctgtctta atctagtacg ttgcaggtga agcgtttcgc gagctaccgt cagtgagcgt      7080
     gattttgtca ctgcgtggtg tgctaattga aatgtgaagt gcaggttcag agttaagtgt      7140
     gaccggtcgt gtgctagtgt gaattgtaga caaaaaatat ccacgttgtg aatatttttt      7200
     tacccgagct gggggagagt gtaagtgttc ggtttgttga ttgatagtgt tgaggagatt      7260
     ttgtagtttt gttggtccgt aaaaa                                            7285
//
ID   Gypsy-222_AA-LTR repbase;    DNA;    INV; 1006 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-222_AA_;
KW   Gypsy-222_AA-I; Gypsy-222_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1006
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1048-1048 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1006 BP; 287 A; 230 C; 277 G; 190 T; 22 other;
     tgtatgacag gwaatgtttg tattagttgt gcaggtttcc ccagacagac ccactaggca        60
     tacaastagg gcagtagtat gtcwtatgac cttaaccacg caggctacca cccaccgagc       120
     tcccaaaacc caccaccaga tgtcckgkag cataacgttc gggcggccat gaggggtggc       180
     gaaatggggg ccatcgttga taagacccga atgaaagggs aatgaccggc samscaggtc       240
     aagaacctsg amggcmaaaw wtaaaccacw ggtcgttcac ttgcccggak wcwgctgaag       300
     aagcwagtcg twaagcatta ccaaaattta aggaaaagca gtgaaaaagt ttgagaggaa       360
     gaagtgaacg agaagtggaa gtcaggtaac cgccgagaga ccacttaatt tctattactg       420
     tggtttaata tcgcatctaa tcccatacca ggaccccgcc gttttttggt atagaaacca       480
     ccgcatttct attaccgccc tacgacgtcc tagagcccta ttccgggtac tttccggcct       540
     cgatattagc gccgaagacc gatccgtcac caaatcggta gcctaggacg cgtaggaggg       600
     tcccagcagg ctgcagccga agtcccccca agccaacccg aggagagcgt ggccagacgt       660
     ggccgaagca ggagagcgcc gaaggccgat accaggccgw gaggaaggag tggacwggtg       720
     gtagctgcga gaagaagggg cccctaacag gtcagattag cacataagaa agtgggagga       780
     aagtgtagaa aagaagtgga tagagagagg gttgtagccc aaataaaact gtatctagtg       840
     aaggaaaata aagtaggagt tttgaacagt gaagtgctgt gggttttcct aaatttctag       900
     tgcgaagatt ccctgtccgc ggtaaattaa ggtaagcgtg ccgaccctga ggcagttgag       960
     tcggggagtc tccaagacgc tcccgattgg ctgaccgaaa cttaca                     1006
//
ID   Gypsy-223_AA-I repbase;    DNA;    INV; 6965 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-223_AA_;
KW   Gypsy-223_AA-LTR; Gypsy-223_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6965
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1049-1049 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3211-3672] - Reverse transcriptase
CC   Positions [4693-5169] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2824..5391
FT                 /product="Gypsy-223_AA-I_1p"
FT                 /translation="MDFWRIFGIYPAIASITSLSTESIPTLESSRECLTAE
FT                 QREILEQTKKIFKVATGESLDTTHWCEHQIVLMDEFKNSKPVRLYPYPIAP
FT                 KIQEGLFVELERLLDRGIIEESNSDWSLNIVPIRKQSGAIRLCLDARKLNE
FT                 RTVRDAYPLPHPGRILSRLPRARYLSTIDLSEAFLQIPLARESRKYCSFSV
FT                 QGKGMFQFTRLPFGLVNSPATLARLMNRVLGQGALEPYVFVYLDDIVIVTE
FT                 TFEEHVRLLEEVARRLREANLSIKLEKSHFCLEEIPFLGYILSSQGLRVNP
FT                 EKIRPIVEYERPTTITKLRRFLGMSNYYRRFIADYSRTTAALSELLKAKTK
FT                 TLKWTPEAEEAFQSIKEKLITSPILTSPNFDHEFMVHTDASDYAIAGVLTQ
FT                 KVDGQERVVEYFSKKLTTPERSYHATEKEGLAALLSIEHFRGYLEGSHFVL
FT                 VTDSSALTFIMRSKWRTSSRLSRWSLALQNYDMTIVHRRGRDNVVPDALSR
FT                 SVMVISKKSDSEWYNSLRKQVEESPEEYPDFRIHNGLLLKYAFNDDLADHR
FT                 FDWKIFPSPETRKEIIKSNHDHMLHIGVDKTVGKIRQRFFWPNMYRDVREY
FT                 VRKCTECKQIKPPNSSTTPLMGDMRDDSRPWQIIALDFIGPLPRSTSGKQY
FT                 ILVTLDLFSKWVQLHAFSSISAKALSSVLVDHWFYRNSVPAIVLTDNATTF
FT                 TSREFRDLMHRFEVQQWLTSRYHSQANPVERVNRVINTAIRSYARSNQRTW
FT                 DSRLSEIEVVINSTIHSSTGYTPFRVAKGEEIVLKGTDHSRFESEEESTLR
FT                 ERAVRVKEQNPQLYALVHKQLQKAHNISSKTYNLRTRRPAKPFAVGRAGKR
FT                 QCK"
XX
SQ   Sequence 6965 BP; 2003 A; 1561 C; 1547 G; 1848 T; 6 other;
     ctggcgccca acgataaaaa aaagaaacca tcagtggttc ctaggaggaa aaaatattct        60
     gtaaggaata ttttttctca ctagcgttgg gggggttttc aagaattagc atttcattaa       120
     aatccactct ggtcgctcta ggagcggaaa catataggtt aatctcgatg cacattggtg       180
     aagcttgtac gcagaattcg tcttttgtaa aacaacatga gtagtcaaac caattagtca       240
     ctttcactac caaactcttg ttgatcggtc tctcaaacac ttttgcaccg gctagaccct       300
     acaagaaaat cgttccgtct attaaaattt gactttttgc tatccaccac actatcatcc       360
     atctgctgcg tccgccgtca caatgtcgcc gcgcgtttcc gtttctgggc cggacttcag       420
     cgtcctgtat cgcggaatga gagtagatca tttagaatcg ggagaactgg attatgaact       480
     ttttcttcgc aacgtcttta tcgcggatga cgattcgcgg tgtaggcgtc gtaggagatt       540
     gaaacagatt ctcaaggatg aacgagaagg tcatgaattc attatacact atgatcaaga       600
     ccccgagata gatcttgagg cgtgtgacaa cattttcaaa ggaatcgaac gtaaactcaa       660
     tcaaatcact tcctcgcaag caaaaaccgt tttcaaagcm cggttattac atttaggcca       720
     tagactcgcg gtcataaaaa atcattcaat cggtgagctc mgagttcaag ctgcagaagc       780
     ttttcgaagt gttctgaacc tcttttctga acacttctgg tcagaagatg tatttttcgc       840
     agaatccgac caagatactg atgatgaaac tgggctaatg gatgaagcca ttggcggacc       900
     tgccgaatct ccggtctccg ttcaaagaac taatcaaact acaggtacga ttcccaaaca       960
     atcggagcaa gtaaaatacg tgaccgatga acggttcaat caagccatga cagatattgg      1020
     tagcctattt aaggctttat ccgctcaaat cagtggactt agagaagaga ttagtaaaac      1080
     atcttcccct tctcmattcc caaagctcaa tagtacgaat ccgtttattg aacctccgga      1140
     agtaccagag gtagctccgg ctgcgcctcg agtaaattgg gccgatttcg agagtggtac      1200
     gaggccctca tcaagacctg aacaaccaca aaagcggagt gtgggttttc cagagtctac      1260
     cttggtagac ggggaagcta tgaatagctc tttccgtcgg aggattgacg agttatcgtt      1320
     cactacttcg gaagcaggga atgcggcaaa tcaaaccgag caaactcgtt cagccccaat      1380
     cattcaatat gtaccgtacc ctgtagctca gcatcgtaaa gttacgccgg tttcccagtg      1440
     gaaaataaaa agatactccg gaaacgatca agggttggga ctgaacgact ttttatcaca      1500
     tgttcaacag ttggccatct ctgaacatgt ctcagccgat gagttgttcg attcggcgat      1560
     tcatttattc gagggtgcag cgcttagctg gtacacctca tgtcgaaatc gaaattctct      1620
     tcttgggtgg gaacatctgg ttgaagaact caagaatgaa ttcagacacc cagatctgga      1680
     ttccgtacta cgcacgaaaa tttatcaaac ccggcaacaa aaaggagaat cattccagca      1740
     atattttttg caggtcgaga aactctttca ggccatgaat cakactatgc cagaaagtga      1800
     gaaggttgaa gttcttaaaa cgaacatgcg gtatgattgc cgtaaggctc tagtggggaa      1860
     aagtatccga tccttgaagg atcttataaa catcggcaaa gagctggatg ctactgactt      1920
     ctcggcattt tcaaaggttt ttggaccatc caaaagggaa acctgtgcta ttaacacagg      1980
     aaacagtggg actaccggtt ctaaaacgtw ctactcgcgg agtcagtctg ctcmatcggg      2040
     aaaaatgaca aactttcctc cgaaagcttc taaacctaat gctaacagcg caaaaggtct      2100
     gttttccaag cccaccaacc aaaaccaaaa ggttgagccg aaatcaggtg gaaaggaaat      2160
     gaaaacatct gcctattcaa aagaaccgca accaggatca agtcagccca gtgctctttt      2220
     gaaaatggtt tcaaattact ccccgcctga agagggccaa tgtttcaatt gcggtgaaga      2280
     gcacgatctt tcggattgta cgattccacg tagggtgttc tgtgacgcct gtgccttcaa      2340
     aggctttacc cgcaaaaact gtccattctg tctaaaaaac cagatgagga agtcctaaag      2400
     tcgttggaac ttccacaagc gcaagatgaa gccgagttta tcaactggtt atccgagctg      2460
     ggccgttttt acgaaactgg cacggatgaa acagttgaag aaacgactcc atctcaaata      2520
     cacaaaatca ctctcaatta ctttcaagac gatcggcccc acgtcaatat taaaatattt      2580
     gatgtgcaag tcactgctct ccttgattgt ggaagcaatt tgacctttat aaatcagtct      2640
     ttattcgaca agttccgacg aattcaaatc cgagagcctg ctgatccagt cgagctacta      2700
     acagcggatg gatcacaatt gcaagttatc ggagaagtcc ttgttccgta tacattcaat      2760
     ggaaaaacca gggtcttgtc gactttagtt gcacctgagt tgaccaaaga atgtatttgt      2820
     ggcatggatt tttggcgaat cttcggaatc taccccgcca tcgcttccat tacctctctt      2880
     tcgacggagt ccataccgac tctagaatca tccagagaat gcctgaccgc tgagcaacga      2940
     gaaatcttgg aacagaccaa gaagatcttc aaagttgcta caggagaatc attggacact      3000
     actcactggt gtgagcatca aatcgtactc atggacgagt tcaagaactc taagcccgta      3060
     cgattgtacc catatcccat cgccccgaaa atccaagaag gtttgttcgt tgagctagaa      3120
     aggttacttg accgagggat tatagaggaa tcaaattcgg actggtccct taacattgtg      3180
     cctatacgca aacaatccgg ggcaattcgt ctctgtctgg acgctcgcaa actcaacgag      3240
     cgaaccgtac gtgacgctta tccccttccg caccctggac gaatactcag tcgccttcca      3300
     cgagcgcgtt acttatcaac tatcgacctt tcagaggcgt tcctgcagat ccctctggcg      3360
     cgagaatcac gcaaatattg ttcgttcagt gtgcaaggaa aggggatgtt ccagttcacc      3420
     cgcctaccat ttggtttagt caacagcccg gctacgttgg ccaggttgat gaaccgggta      3480
     ttaggtcagg gtgcactgga accgtatgtc tttgtctact tagacgacat cgtcatagtg      3540
     acagagacat tcgaagaaca cgtacggttg ctcgaagagg ttgcaaggcg attgcgcgag      3600
     gccaacttat caattaagtt ggagaagtct cacttttgtc tggaagaaat accgtttctt      3660
     ggctatatct tgtcttccca aggattgcgg gtaaatcccg agaagattag gcctatagtc      3720
     gaatatgaac gaccaacgac cataactaaa ctccgtcggt ttttaggtat gtctaactac      3780
     tatcggagat tcatagccga ttatagccgg actaccgctg ctctttcaga gcttcttaaa      3840
     gcaaagacga agactctgaa atggactcct gaagccgagg aagctttcca gagtataaaa      3900
     gagaaattga ttacctcacc aatcttgact agcccgaatt ttgatcacga gtttatggtg      3960
     cacaccgatg ctagtgatta tgctatagcg ggcgttctaa cgcaaaaggt ggatgggcaa      4020
     gagcgagtgg tagagtattt ctccaaaaag ctcactactc ctgaacgatc gtatcacgcc      4080
     acggagaaag aaggcctagc agctcttctc tccatagagc attttcgagg atatctagag      4140
     ggcagtcatt ttgtcctcgt aacggattcc tcggcactaa cgtttataat gagatcgaaa      4200
     tggagaacct catcgcgtct cagtcggtgg agcttggccc ttcagaacta cgatatgacc      4260
     atcgtccatc gccgaggtag agacaatgtt gtcccggacg ccctgtcgag aagcgtgatg      4320
     gtcatatcca agaaatccga ttctgaatgg tacaactcac ttaggaaaca ggtcgaggaa      4380
     tctccagaag aataccctga ttttcgtatt cacaatgggc tacttttaaa atacgctttc      4440
     aatgatgatc tggctgatca ccgatttgat tggaaaattt ttcctagccc ggagacacgc      4500
     aaggaaatca taaaatcgaa tcatgaccat atgctccata ttggagtgga taagaccgtt      4560
     gggaaaatcc ggcagagatt tttctggcca aatatgtatc gagatgtccg agaatacgtc      4620
     cggaaatgta ccgaatgtaa acaaatcaaa ccacctaact cttccaccac accgcttatg      4680
     ggtgatatgc gggatgacag tcgtccatgg caaataatcg cccttgactt cattggaccc      4740
     ctcccacgct caaccagcgg taagcaatat attcttgtca cattagatct ttttagcaaa      4800
     tgggttcaac ttcatgcttt ctcaagcatt tctgccaagg ctttgagctc agtattggta      4860
     gaccactggt tttaccggaa ttccgtgcca gcaattgtgc tcacggacaa tgcaacgaca      4920
     ttcacatccc gtgaatttcg cgatctaatg catcgattcg aggttcaaca gtggcttact      4980
     tcgcgatacc actcgcaagc taaccccgtt gagcgcgtga atcgtgtaat caacaccgcc      5040
     atccgatcat acgcccgaag caatcaaagg acgtgggact ctcgactgtc tgagatcgag      5100
     gttgtgatta actccacgat ccactcgtcg acaggctata ccccgtttcg cgtagcaaag      5160
     ggggaagaaa tcgtactcaa aggtaccgat cattctaggt ttgagagcga agaagaatcg      5220
     accctgaggg aaagggccgt acgagtaaag gaacaaaatc cccagctgta tgcactggtg      5280
     cataaacaac tccaaaaagc gcataacatt tcttctaaaa cctacaattt acgaacccgt      5340
     aggcccgcta aaccattcgc tgtaggcagg gctggaaagc gtcaatgtaa atagaaagta      5400
     tcgtgcgact tttacataga tgcttctctc gctgtcatcg gatggcgaga caatgacaga      5460
     gatttttttc aaactctctt tcattttccc ttcgctacgg cttgtgacgg aattgtgaac      5520
     ttgataattt ttagttcatt gtaatgtata attgttgttc atatcgctgg aattatagaa      5580
     ggatattcac tcaacttatc aaacacattt acttcccaaa attttccaaa atgagaaagt      5640
     aattttaaaa gcaaaacaac attaaaattg ctctcgtgaa agcccgttat cgcgacgtga      5700
     cgaaatgagc gcatgaaata tagcttcgtc tagtgacagt gaggagactc gtttcgtcag      5760
     tgttgcaagt cggtcatgaa acttaacagc cctggctgta ggtgacacgg ttttcaaaag      5820
     gaatactaag ttgtccaacg ctagtgagtt ttataatgcc aaactcggcg ctcaatattt      5880
     accttgcacg gtgattgcgc ggcacgggtc atcgtcatac gagctgatag atagccaggg      5940
     ccgcaatatc ggcgtatggc cagccaatct tttaaaatcc ggtcattagc acacgtttgc      6000
     gtgtggacga tcagttcgat gaaaagggga gtaaggtttc cagtctctgg aagtaaaatc      6060
     tgaaatattc aatacgatta attcaaaaat tcacgacctt ctctggctca tttggaatcc      6120
     gtaccttccg tcccgttacc tctgattctc ggatataagc tttccgcggg gctaatcacg      6180
     acgatatatc ggcaaaaggg aattattgaa ggataggaga atagatgagt cagcttggta      6240
     gctaggggga gacgtcctcc aataacgaaa aaaaaatcaa actcgcgcgc gctggtcttg      6300
     ttcctaattg aacgagagcc aaattagaac tacggccaga ttttaaactg actgatccta      6360
     tagctgatcg acagcaagtc ggaaactgtt atacgtttga attcgtatcc atattcattg      6420
     ttgcattgtt acatagcatc atctttattg ttacccgtat gtacttcaga gtaaaaaaac      6480
     cttttgtatg tcctcgtact cagtacataa tcagactact attgttcaag tcatacattt      6540
     gatagccagt tttgttgatt gtcgaccgtt cggcagtatt gtttattact tcgttcgaat      6600
     cagaactgtc ccgcgtgaca gtcggttccg gttttgtgat gtagaccacg gcataatcgc      6660
     gatagcacgg aaagatagtg tggaatggta gagctttgtt tagatggcca caactagaag      6720
     tgcaggggtg taggagaggt acaggcagag tggacagttg aaggttttga ccatatagtc      6780
     cctcgacacc agcgttgtgg tcggaaaaga tgtgagtttt gttacggtta gccagtggtt      6840
     tagcctgtta tgtttaaatg ttatgtttct gtttccagag ttttgttcag ttttctttaa      6900
     cattaattct tttgttaagc aaaaaaaatg tatattagtt ttttgctacc ctgaccagag      6960
     gggga                                                                  6965
//
ID   Gypsy-223_AA-LTR repbase;    DNA;    INV; 1141 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-223_AA_;
KW   Gypsy-223_AA-I; Gypsy-223_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1141
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1050-1050 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1141 BP; 273 A; 318 C; 299 G; 250 T; 1 other;
     tgttaccgaa tggtaacttg ataaaaagag tggggatgta gggccaaata ttatatagct        60
     agactaacgt tcaatttaaa tgagggggcg tcggcgagtt gacctaatgc casccgatag       120
     acatcttggg tggtgaagtt gagcaatagt ctgaagtggg tggcgatgtg ggcggaaaca       180
     cggagagtga gcaattttgg gagagaagat cggacgattg gggctaagag tgcgacgtgt       240
     gagaaggttc gggatcagtc tacagaagct cgttccagcc gacagaagtt atagaagaca       300
     acctccaaag tagcgcgtat tacggtggtg caagtagaat cgcacacatc ctgtgcgtta       360
     gtgccgaaag cttcctccag gcccgtaaaa tctcctcgac aaggccagga aaagagtgaa       420
     ccgttcattt tccgttgaaa cgacaccacg tttgttacgg accgaaggtc ggctgtctca       480
     ccttccaact accgccgctg ggccgttcca cgcttccagt ggctccgtca gttgcgatcc       540
     cgcgccaaat tcgtcatcaa tcgctttcaa gccgttcccc gacagcctca acggatattt       600
     cgccggtttt cgttggaatt acttggccac tttccggctt cccggcaagc agcatccaga       660
     cacgtggacg gttgtccgtt gggctccgct ccacgatcac ccctgcaacg ttattgggca       720
     ctccaaccaa tttggtattg ctccacggca accagaacga cctcgaaagt tcttcgcaga       780
     gtattcactc ggccagcgtc cggcaacatc atcggccact ctccagccac actctaggcc       840
     cacttgttat catccgcccg cccaccaccg gtaagctggg cctgtattcg acgtgtcgca       900
     tcactccgct gtgcgacgac ccccagaaga gaaaatataa ggtaattgct gacaaaattt       960
     tgtttcagga cttccccgcc gaaaactccc ccacccaata acgccctggg acccgggagg      1020
     caaaagaggc cttcggtgcc caccctggaa gctgccgttg gctagtacca gcagcttggg      1080
     gcttaggcac gtccccgtct gggacggcgc aatattctcc cggggccaaa aggtagtttc      1140
     a                                                                      1141
//
ID   Gypsy-224_AA-I repbase;    DNA;    INV; 4473 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-224_AA_;
KW   Gypsy-224_AA-LTR; Gypsy-224_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4473
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1051-1051 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3389-3898] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1832..4336
FT                 /product="Gypsy-224_AA-I_1p"
FT                 /translation="MDGSKTVNPHIITHHYPLPVIEELISNKSGAKKFALI
FT                 DLRGAYQQLIVSEATKKLLVINTHKGLFTYKRLPFGVKPAATIFQSVMDRI
FT                 LQGISDVQTYIDDILIWAESDEELLSKIKIVLRRLAQHNVKINAEKCEWFV
FT                 SQVKYLGHILSEAGVLPNPEKVKAITAVPVPKSKTQLKAFLGMITFYTKFV
FT                 PKLCILLSPLYNLLTKDSKWEWNYRCDEAFEKSKNAICSAKILTHYDPSKP
FT                 ITVTCDASDDGISGVLSHKINNNDMPVFFVSRRLTKAEQKYPILHREALAI
FT                 VFAMEKFYKYVLGQKVTIVTDHKPLLGIFNSRKGGPPIIATRLQRYFLRLS
FT                 IFDFTITHMAGKENLVADCLSRLPVNQDLSRADLLENDYSSFNQLNYLVDD
FT                 RKVNLNSILISKESESDPLLSIVIKYVRKGWPSHVKDQKLKNFYSKRHELD
FT                 VESGCLIFGERIVVPNSLKLPSLQLLHSNHRGIQKMKQIARRFLYWDGFST
FT                 DIENFVKSCKKCQILGIDRTPKVYGNWPAASTAFERVHIDFFQKFNRTFLI
FT                 LVDAYSRWIEIHKMSKTNAENVAQVLDNIFAIFGFAAIIVSDNGPPFNSFY
FT                 FKKYCQSRNIEHILSPPYHPASNGLAERAVQTTKAVLNKLIEKDSTSSLQI
FT                 ENEINKFLHHHHQTPTTEDKIIPNDRIFSFSPRTELTSMKYNKCIFSDQNK
FT                 SKTKATFNINDNVIYTYKSNGRAYSSEAVIVKQLSNLTYTIDVDGDKRTAH
FT                 KNQLKSVPQKQFILKNHVNTRSLRNELEHDVVDNDQVSIKRKSSQRTATKP
FT                 KPKLYQTLRRSSRINKSKYRTVNVKSIVKKKKM"
XX
SQ   Sequence 4473 BP; 1599 A; 785 C; 914 G; 1173 T; 2 other;
     gttctggcga cgaagttgaa acggcgcgaa ttgcgtgcag agtgcgtgaa aaatttgtga        60
     aattttagtg ctaggtgcac ggatcgggaa agatctagac cgattaggat ttcaacgtgg       120
     tggaagttgt ttgaaggaca atgcttggtg ggtctgcgac cgaagacaat aagccagcta       180
     caatcatggt ggacaaaaga acgaaaggaa taaggtttcc tttgtattcg ccgggtctta       240
     acgtgaattc gtaccttcaa acggttgaga tttatttcac gttaaacaag acaccaaacg       300
     atgaaaaagc gttggaattt attacaagtg tgggtcaaga gactgccaat aggattatcg       360
     gcagtttcaa gccagacaaa attgttaata aaatctatga agaaatcatt aagcaagttt       420
     aaagtgctac acgaagagaa caaaaatgtg ttcgccgagc gccatcgtct tattacgcgc       480
     cggcaagaag atggtgaatc gttagacgac tttgcgattg atctgcagaa tattgtcaga       540
     acactgcagc gtgagtgtag aaacagaagc tacgtcggtg caatcggtgt ttgtgcgctg       600
     ggttacgaaa cgataaaacg cgtgaatcaa tgmtcgcgtg atgcgccgtg atgagaagct       660
     caatctggct cagttgttag aaaaagcaaa gaccatcgaa attgccagcc ctagaatctc       720
     gaaaaatggc taacacgatg gtaacagctt gaattatgtg ggaaacatgt aattgggagt       780
     acagcaggac agtgcttaaa cccggaaaaa tgaatgagca agcgtatgga aagcaatcga       840
     atagtgatat ctccacccat cgtggtagtg ctaaagtaag cgatgatact gtgtgctaca       900
     attgttatag aaaagggcat ttgtcgtacc atgtgtacgt tgcccaaagc caaaaaacca       960
     cggcagggag tgccgtttgc gaagagaaat gtgagcagga aaagagcata cgaagaaaga      1020
     ataaaccaac cgtatcggct gccatggaag acctgaaaat gagtgttggc caagaagacg      1080
     atgagatctc cgacgatgaa acaactgtag aacaggatag ccgaagagga tgcttctaat      1140
     tgggtaaaca acattatgtt gggtaagtcc amcaacaata tccaacacct gccttttgtg      1200
     gaactgatgc gttaatggaa tcagcaaact gattaatgga atgtgatacg ggtgcttgtg      1260
     caacaatttg ctctctaaac acatacaatg attgttttag catgtgtaga attttacccg      1320
     accagagaaa atttttcgtc ttatcaggag aatcagtggg agttctaggt aaaataaaag      1380
     ttaaagtgag agtgagtggc gaactcttaa atctctggtt gctaatagtc aaatctccca      1440
     aaaattttgc gcctctcttg ggtcgtgact ggcttaatat catatggccc aaatggagaa      1500
     atacatttaa actaaattct ctaaaggaag ttaagaggga gttgtgggtt aaaaatacag      1560
     ttaaagatct taagagagaa ttttcaaaag cattcgatga tgatctgaca gagcctatta      1620
     aagatgtagt ggtagatata aagatagatc cacaggcaaa acccgttgta cataaaccct      1680
     atacagtagc gttcaaacac agggaaacag ttgcaaaaca cctagaagat cttcaagcga      1740
     aaggtaggta cttgaaaaag tcgaatacgc cgagtgggct tctcccatag tcgtggtagt      1800
     gaaaccgaat aaaaaagaca taagaatatg catggatggg tctaaaacag taaatccaca      1860
     cattataact catcattacc ctctcccagt aattgaagaa ttaatatcaa ataagagtgg      1920
     agcgaaaaag ttcgctctta tcgaccttag aggagcatac caacaattga tagtttcaga      1980
     agccacgaaa aagcttttag ttatcaatac acataaaggt ttgtttactt ataaaagatt      2040
     gccattcgga gtaaaaccag cggccactat attccagtct gtaatggata gaattttaca      2100
     aggtatttct gatgttcaga catacataga tgacatcctc atttgggcag agtcagatga      2160
     agaactttta tccaaaatca aaatagtgtt gagaagatta gcgcaacata acgttaagat      2220
     caatgccgag aaatgtgaat ggtttgtatc ccaagtgaaa tatttgggtc acattctgtc      2280
     ggaggcagga gtgttgccaa atccggagaa agtgaaagcg ataacggccg tgccagtgcc      2340
     taaatcaaaa acgcaactta aagcattcct cggcatgata acattttaca ccaaatttgt      2400
     tccaaagctt tgcatacttc tatctcctct ttataattta ttaaccaaag acagtaagtg      2460
     ggagtggaac tatagatgtg acgaagcatt cgaaaaaagc aaaaatgcta tctgtagcgc      2520
     gaagatactt acacactatg atccatccaa acccatcaca gtaacctgcg acgcaagtga      2580
     tgatggcatc tcaggagttt taagccataa aattaacaat aatgatatgc ccgtgttttt      2640
     tgtttctcgt cgtcttacaa aagctgaaca gaaataccct atattacata gagaagcttt      2700
     ggccatagtt ttcgcaatgg aaaaatttta taagtacgtg cttggacaaa aggtgactat      2760
     tgttaccgac cacaaacctt tactgggtat tttcaatagc aggaaaggag ggcctcctat      2820
     aattgctaca aggctgcaac gatatttctt aagattatcc atattcgatt tcactatcac      2880
     tcatatggca ggcaaagaaa acctagtagc tgactgtctt tcaaggctac ctgtaaatca      2940
     ggatctcagt agagcagatt tgttagaaaa tgattatagt tcgttcaatc aattgaatta      3000
     tctagtagat gacaggaagg ttaacttgaa ttcaatatta ataagcaaag agtctgaaag      3060
     cgatcccttg ctgtcaatcg ttataaaata tgttcgtaaa ggctggccaa gtcacgtgaa      3120
     ggatcaaaaa cttaaaaact tttactctaa aagacatgag ttagatgtag aatccggatg      3180
     cctaatattc ggtgaaagaa ttgtcgtccc aaactcgcta aaattacctt ctctccaatt      3240
     acttcattca aaccatcgag gaatacaaaa aatgaagcaa attgctagaa gattcctgta      3300
     ctgggatggt tttagtacag acatagaaaa ctttgtgaag tcatgcaaaa aatgtcaaat      3360
     tttagggatt gatagaacac ccaaagttta tgggaattgg ccagcagctt cgacagcctt      3420
     tgaaagagtt catatagatt tcttccaaaa gtttaatagg acttttttaa tattagtaga      3480
     tgcatattca agatggatag aaatacacaa aatgagtaaa acaaacgctg aaaatgttgc      3540
     acaagtactc gacaatattt ttgctatttt tggcttcgca gccataatcg taagcgacaa      3600
     tggaccacca ttcaatagtt tctattttaa aaaatattgc cagtcacgga acattgagca      3660
     tattctttcc ccaccgtacc atcctgctag taatggccta gcagaaaggg cagttcaaac      3720
     cacaaaagcg gtgttaaata aactaattga gaaagattct acttcgtcat tacagatcga      3780
     gaatgaaata aacaaatttt tgcatcacca tcatcaaact cctaccacag aagacaaaat      3840
     aatcccaaat gatcgaattt tctcattctc tcctcgcaca gaattaacta gcatgaaata      3900
     taacaaatgt atattcagcg atcagaacaa atccaaaact aaagcaacct ttaatattaa      3960
     tgataatgta atctatacgt acaaatcaaa tggtagggca tacagttctg aagcagtaat      4020
     tgttaaacaa ctttctaatc taacatacac aattgacgta gatggtgata aacgaacagc      4080
     tcataaaaat cagttaaaaa gtgttccgca aaaacagttc attctgaaaa atcacgtcaa      4140
     taccaggtct ttgcgtaacg aactagaaca tgacgtcgtt gataatgatc aagtgtcaat      4200
     caaaaggaaa agttcccaaa gaacagcaac aaagcctaaa ccaaaattgt accagacatt      4260
     acgtcgctct agtagaatca acaaatcaaa atatagaact gtaaatgtga aatcaattgt      4320
     taagaaaaag aaaatgtagt tatacattgc atactgtaag gaaaaattgt aggttaagta      4380
     tctgaattga atttaagaat gaagtgaaat actattgatg aaataaaaaa aaatgttaaa      4440
     ttaccttaac atagatttta aaggggggag atg                                   4473
//
ID   Gypsy-224_AA-LTR repbase;    DNA;    INV; 145 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-224_AA_;
KW   Gypsy-224_AA-I; Gypsy-224_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-145
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1052-1052 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 145 BP; 49 A; 30 C; 25 G; 41 T; 0 other;
     tgagagtgag tgcctgcaat caactctcat tacactgttg gacctaataa atattcagta        60
     tgaatttgac tagtacaaag taaagaagtg ttttcccaaa gcttaatccg aaaggttccc       120
     aaattaccaa tcctcggtcg taaca                                             145
//
ID   Gypsy-225_AA-I repbase;    DNA;    INV; 2138 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-225_AA_;
KW   Gypsy-225_AA-LTR; Gypsy-225_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2138
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1053-1053 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TACA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           420..2138
FT                 /product="Gypsy-225_AA-I_1p"
FT                 /translation="MQDGNISSVQPGSGEASLSPNPSQNSSSRNGLSLEEV
FT                 ENIIVRLINQLNFSNATVKNLMQECNAMRSEIVSMRAETSRLNELVEKTRL
FT                 SSLLPQQTRAPNGDSPFRCDRDSQTRTNATKSGTIINDASMCVRVDNKLSD
FT                 DDGRVQVDAWIRNSGHEIVNGEANNYLLGGCPNNNIIRETNIKNLIDGTCE
FT                 KDFVGDDLHSIPRVSESYCGFEAYGGLRGDCHRTTHAHNEIRVVESLLSVS
FT                 EAEGAFSEFCGTEFYPVRKWIAEFEELSDSLGLSEFRKFVIAKRKLSGLAK
FT                 LSLNTTNKVFNWRSLKDFLIAEFEYSENPAIVHGRLRNRKRHMGENVLAYF
FT                 LQMREIGAKANVDISSIITYTINGINDNGPDKILLYGCKSIEEFKEKLRLY
FT                 QGIKDSKYAKNVKLFNSNSEKKMFSRKPKGYDNIVKCFNCGIDGHMSSTCS
FT                 KKLGRDYINLCRSEPNHLTYSKNTKKYLGPCGVKTRINKANNSKLDVIMTE
FT                 VVEKSNGHQPEPIPKRSWRQHQDTMIIRRTDTTASKRDEIDRKQMNECRRS
FT                 KRGESRLRVGQSDGTIRAGWWSGWPI"
XX
SQ   Sequence 2138 BP; 713 A; 342 C; 493 G; 590 T; 0 other;
     aatttggggg ctcgtccggg aacgcgggaa gaaacttatg ggatattcgc cagtgcgcgc        60
     cattgggcga acgaagaatc aacgtgaaac attgaaataa caggaaagaa atttgtagct       120
     tatgtgaact gaattttagc tgttaagtga tttgaatttt taatgttaaa gtagtgttaa       180
     gaccttgaat tcaaattatt agtgtaagca aagtgatttt tttttttaaa ctttttttta       240
     aaccattcaa tcttcgatga cattgtacag tgaaaagaac ataattgcaa tctttttcgc       300
     aaagtgtaca tcactcattt gacctggggt taagggtcat tgtacggtgc ttaaaacaaa       360
     caacaaaaca agaagacagc gagtgttcga attcatcgtg gcaacttgat tacagtgcaa       420
     tgcaggacgg gaacatttcg tcagttcagc ctggtagtgg cgaagcttct ctttctccta       480
     acccatcgca aaattcttct tcaaggaatg ggctttcact ggaagaggtt gaaaatatta       540
     ttgtgcgttt aataaaccag ttaaactttt ctaatgcgac tgttaaaaat ttaatgcaag       600
     agtgtaatgc gatgcgtagt gaaattgttt ccatgcgggc agaaacatcc cgattgaatg       660
     aattggttga aaaaactcgc ttaagttcct tgttgcctca acagacgcgt gctccaaatg       720
     gagatagtcc ttttaggtgc gatagagaca gtcaaacaag aacaaatgca acaaaaagcg       780
     gaacgattat caatgacgca tcgatgtgtg ttagggtgga caataaattg agtgacgacg       840
     atggtcgtgt tcaggttgat gcatggatta gaaactccgg tcacgaaatt gtgaatggtg       900
     aagccaataa ttacttgttg ggtggttgcc cgaataataa tataattaga gaaacaaata       960
     taaaaaatct gattgatggt acatgtgaaa aagattttgt tggtgatgac ctacatagta      1020
     tacctagagt gagtgagagc tattgtggct ttgaggcgta cggcggtttg cgtggtgact      1080
     gccacaggac aacccatgcg cataacgaaa tcagagtagt ggaatcgctg ctatcggtaa      1140
     gtgaagctga gggagctttt tctgaatttt gtggaacaga attttatcct gtgcgaaaat      1200
     ggatagctga gttcgaagaa ctatcagatt ctcttgggtt gtcagaattt cgtaagttcg      1260
     ttattgcaaa gcgcaaattg tctgggttgg ctaaattatc gttgaatact accaacaagg      1320
     tctttaactg gagaagcttg aaagactttt taatagcaga gtttgaatat tcagagaacc      1380
     ctgctattgt tcacggaagg ttgcgaaatc gcaaaagaca tatgggcgaa aacgttttag      1440
     cgtatttttt gcaaatgcga gagattgggg ccaaggccaa tgtagacatt tcatcaatta      1500
     tcacttatac aatcaatgga attaacgaca atggtcctga taaaatttta ttgtatggtt      1560
     gtaaatcgat tgaagagttt aaagaaaaac ttcgtttata ccaaggcata aaagatagca      1620
     aatatgcgaa aaatgtaaag ttattcaatt caaattcgga aaaaaagatg tttagtagga      1680
     agccaaaggg ctacgacaat attgtaaaat gtttcaattg tggaatagat ggtcatatgt      1740
     caagcacatg ctcgaaaaag cttggacgtg attatattaa tctttgccgc tctgaaccca      1800
     atcatttaac atattcgaaa aacacaaaaa aatatctcgg accttgtggt gtcaaaacta      1860
     ggattaacaa ggcaaataac tcgaaattag acgttattat gactgaagtc gtagagaaat      1920
     ctaatggaca tcaaccagaa ccgattccaa aacgaagttg gcgtcagcat caggacacga      1980
     tgatcataag aaggactgac acaacagcat cgaaacgaga cgagatagat cgaaagcaaa      2040
     tgaatgaatg caggagatcc aagcgaggcg aatcaagact acgtgtgggg caatcagatg      2100
     gcaccatccg agccggatgg tggtcaggat ggccgatt                              2138
//
ID   Gypsy-225_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-225_AA_;
KW   Gypsy-225_AA-I; Gypsy-225_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-269
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1054-1054 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 269 BP; 79 A; 52 C; 64 G; 74 T; 0 other;
     tgtggggatt ataccttagg catccctagg tgctccccca gatacacact acaacacaat        60
     caacgccgaa tccagcaggg cgaatgctgg tgacgataga gtgagtctgg aacagtgata       120
     gcaatcgttc ggtcgtgttt gctagaaaat atatgatttg attttaccat agttttttat       180
     gaagttgcga tatccgaagt tgtcgtccag aacgcgtatc tccgtattaa aaagtaggga       240
     agtgtagtga aagcatcaag tttactaca                                         269
//
ID   Gypsy-226_AA-I repbase;    DNA;    INV; 7106 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-226_AA_;
KW   Gypsy-226_AA-LTR; Gypsy-226_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7106
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1055-1055 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5151-5633] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1435..2727
FT                 /product="Gypsy-226_AA-I_1p"
FT                 /translation="MSEYVHFSQIEAYVKRCVEQITQQGTRYSMGQENLVN
FT                 NLADEIAQVRFADQEAEPILRNRVGPPQSSMVREPSPPLQLSGPRPDARST
FT                 PRQNPANQHRTFSLEGDRFVPVQFGNIPNPRATMESPGPRRYQADVDGYRV
FT                 NSFSRRQPHQQCAIIEKWPKFTGDTNSVPVTDFLRQIDILCRSYDISKQEL
FT                 RMHAHLLFKDNAYVWYTTYEEKFNSWETLEVYLKMRYDNPNRDRLIREEMR
FT                 NRKQRPNELFSAFLADMEMLAQRMIRKMSEAEKFEMIVENMKLSYKRRLAL
FT                 EPIQSIDHLAQMCYKFDALESNLYQAYNQPKSVHHIDLDDEDNEECLDPSE
FT                 LEICALRSKMMQNRGRETQKVNLESKSSTEQKNTEMTCWNCNKAGHLWRDC
FT                 DKRKRIFCHICGMMDTTAFKCPNQHNIRSENEEPKNE"
FT   CDS           2772..4388
FT                 /product="Gypsy-226_AA-I_2p"
FT                 /translation="MKIPNSNFSYFQRVFQINTFVSRCPHLKVRILSEELE
FT                 GLADTGASISIISALDLIEKLGFEIYPIPLQVKTADGTGYHCKGYVNIPFS
FT                 IGNVTHVLPTIVVPEITKKLILGMDFLNKFGFHLTASRNEGVSSNTSSVAA
FT                 PEVNQIDLCFMDEYFGENIETICFELQPCKVDETSKIELDESLEMPTVEIP
FT                 ESHISTANGLLTEHHLSDSERQSLFEAVQTLPATKEGQLGRTALLKHKIEL
FT                 VPGAKPKKFPSYRWSPSVESVIDTEVERMKKLGVIEECQQAVDFLNPLLPI
FT                 KKANGKWRICLDSRRLNQFTKRDEFPFPNMMAILQRIPKSKYFTVIDLSES
FT                 YYQVALDDSSKSMTAFRTAKNLYRFTVMPFGLSNAPATMARLMTRVLGHDL
FT                 EPRVYVYLDDIIIVSNSLEEHLELIREVARRLRNAGLTINLQKSKFCQTKI
FT                 RYLGYVLSEDGLSMDISKIQPVLEYPVPKTIKDIRRLLGLAGFYQKFIPNY
FT                 SEVTSPISDLLKKNRKRFTWTEEADAALTKLKTLLVTAPVLAN"
XX
SQ   Sequence 7106 BP; 2133 A; 1435 C; 1598 G; 1935 T; 5 other;
     ttttggcgcc caacgtgggg cccgagtttg aatagaattt gccaataatt tgaaatctgg        60
     gtttgggtcg aaaagattgt atatatttag agttaagacc cttatcatta acaggtttct       120
     cgaattggtt gattgaataa tcagtctgat tagaattgta aattttgaat tgtgtttatt       180
     aaagttggtt agtcagttaa ttttggttag aattaagttt tgaacttgag tattgaattt       240
     gttggtttag gtcggttagt ttgcatattt cttcgattca tatttgtttc taaattatta       300
     ttttgttcta agttacctga attcgacaaa gagttacttc gaattgaatt tcattatctt       360
     ctgctgtcaa ttttgtgtta tcgagcctac gcatttgaat cggacgtgag tcggtggctt       420
     ttcttaaaac tagtgataca gtaaactaag tgcaccatgg attggtaccg tatctatgct       480
     gacgacctcg atgaagaaga gcttgactat gagctggcga ttcgagcgtg tcccctcgtg       540
     ggcggcmcag agactcggcg aagggaactg aggaacctcc ttcgggaccc gaattcgtcg       600
     aatacgttgg tgattgtcga tcacatgatg caggctgacc ttgatattgt gccatacaag       660
     ctacaagaaa tcgagaggat catgattgag gaatctaaca gagggatgct atcgagattg       720
     gtacattacc atcagagaat ccgacgttac gtcccacatg atgccgcgga actggagaat       780
     cgcaggcgtt tgttggagac ggttacggat ttggccagga ggtatttcca tttggacttc       840
     cgtctgatgg atactccagt accacaggac gaagttatgg gcagagccac agtcaactca       900
     ccacggttta cgtcgcaagc aacgagtgcc actcgtcctg gagaagatgt acaggcaatt       960
     gtcgggccga tggtgaatcc agttcggtcg aactccgccg aatcttcaaa tgtagcagga      1020
     gcggttggcg gcgaagtcgg aatagtttca gataatcgtc aattcgcatt gaataatcca      1080
     gaacctgccg ttattaatcc agatccagac cacagtgcat ttcctctttg gcgtccgact      1140
     gccgcccagc agccatatac aggggcgatt cctcgagcgg caaggccatc cattccggag      1200
     tttgttcagt caccgccgca gatgatttcg tcactcaact tcaatctcca gaatcctcaa      1260
     cagggcacga gatgcagtat tccttgttct gctscaatcc aagagactat cggaaatcag      1320
     ccaccttttg tacgtcggca gcagggagat gagcgacgcc cgataggagt gcagcttcct      1380
     cagagggccg acgaagttcg tccgtcgtcg agaacgttag ctgaaaatat caatatgagt      1440
     gagtatgtgc atttctcaca aattgaggct tatgtaaaga ggtgtgtgga acaaataaca      1500
     caacaaggta caagatattc gatgggacag gaaaacctgg tgaataacct ggcggatgaa      1560
     atcgcgcaag tgcgttttgc agatcaagaa gcggaaccaa ttttgcgaaa tagagttggt      1620
     cccccacagt cttcaatggt gcgtgaacct agtccaccgc ttcagctcag cggacctcgt      1680
     ccggatgcta gaagcacacc gagacaaaac ccagcgaacc aacacagaac cttttcattg      1740
     gaaggagatc gatttgttcc agttcaattt ggaaacatcc ctaatcccag ggcaactatg      1800
     gaatcgccgg gtccgcgaag gtatcaagca gacgtcgatg gttatcgcgt gaattcgttt      1860
     tcaagaaggc aacctcatca acagtgtgcg atcattgaga agtggccgaa atttaccgga      1920
     gatacgaatt ccgttccggt gaccgacttt ttgaggcaga tcgacattct ttgtagatct      1980
     tacgacatca gtaaacagga acttcgtatg cacgcccatc ttttgtttaa agataacgcg      2040
     tatgtttggt acactacgta cgaagagaag ttcaattcgt gggaaacatt ggaggtctat      2100
     ttaaaaatgc gatacgacaa tccaaaccga gaccgactga tacgcgaaga aatgcgaaat      2160
     cgtaaacagc gcccgaatga actcttcagt gcatttttag cggatatgga aatgttagct      2220
     caacgtatga taagaaaaat gtcggaagcg gaaaaatttg agatgatagt tgaaaacatg      2280
     aaactctcgt acaagcggcg tctggctttg gaaccaattc aatcaataga ccacctggct      2340
     cagatgtgct ataaattcga cgcgcttgag agcaatttat accaggccta caatcaaccg      2400
     aagtcggtgc atcatatcga tttggatgac gaagacaatg aggaatgttt ggacccttca      2460
     gagctcgaaa tctgtgcact ccgttcgaaa atgatgcaaa atagggggag agagacacag      2520
     aaggtcaatt tggagtcaaa gtcgtccaca gaacagaaaa atacggaaat gacttgctgg      2580
     aactgcaata aggccggcca tctttggcgc gactgcgata aaagaaagcg aatcttctgt      2640
     catatctgcg gaatgatgga tacaacggcg ttcaagtgtc cgaaccaaca taacattcgt      2700
     tcggagaacg aagagccaaa aaacgaatag tagaggacga ttccgggaat cattgtcctc      2760
     ctccaggtga tatgaagatt cccaacagca atttttccta ttttcagcga gttttccaga      2820
     tcaatacgtt cgtttcgcgt tgtccccatt tgaaagtacg aattttatcc gaggaactcg      2880
     aaggattagc ggacactgga gccagtattt cgataattag tgccttggat ttgattgaga      2940
     aacttggatt tgaaatttat ccaattcccc ttcaagtaaa aactgcggat ggtactggct      3000
     accactgtaa gggatacgta aatattcctt tttctattgg aaatgtcact cacgttcttc      3060
     ctactattgt cgttccagaa ataactaaaa agttgatatt ggggatggac tttctgaaca      3120
     aatttggttt ccacttaact gcttcaagaa atgaaggcgt ttcaagcaat acttctagtg      3180
     ttgcagcgcc agaagtgaac cagattgact tgtgcttcat ggatgaatac tttggcgaga      3240
     acatcgaaac aatttgcttt gagttacaac cctgtaaagt agatgagacg tccaagatcg      3300
     aattggacga aagcttagaa atgcctactg tggagattcc agagtcccac ataagcactg      3360
     cgaatggtct actaacagaa caccatctga gtgactcgga gcgtcaatca ctgtttgagg      3420
     cagttcaaac actccctgcc acaaaagaag gtcaactagg aagaacagct ttgttaaaac      3480
     acaaaattga attagtccca ggagctaaac cgaaaaaatt cccatcctac cgttggtctc      3540
     cgtcggtcga aagcgtaatt gacacagaag tcgaaagaat gaagaagtta ggcgttattg      3600
     aggaatgcca acaagccgta gacttcctta atcctttact acccattaaa aaggccaatg      3660
     ggaaatggcg tatttgcctg gactcgagaa ggttgaacca atttactaaa agagacgagt      3720
     tcccttttcc gaatatgatg gccatactcc agaggatacc gaaatccaag tattttacgg      3780
     taatcgatct cagcgaatct tactaccagg ttgctttaga cgattcttcg aagagtatga      3840
     ctgcattccg tacggccaag aatctctacc gatttaccgt tatgccattt ggtttatcta      3900
     atgctccagc aaccatggca cgcctaatga cacgagtatt gggtcacgat ttggaaccaa      3960
     gggtttatgt atatctcgat gacataatta ttgtttcaaa cagcttggaa gaacatttag      4020
     aactgataag agaagtagct cgaaggcttc gtaatgcggg tctcacaata aatttacaaa      4080
     agagtaaatt ttgtcagacg aagatccgat atttgggata cgtactctca gaagacggct      4140
     tatctatgga tatcagcaag attcagcccg ttcttgagta ccccgtaccg aagacgatca      4200
     aggacataag aagacttctt ggattggctg gattttatca aaaattcata cccaattatt      4260
     cggaagtaac tagtcctatc tcagatctac tgaaaaagaa ccggaaaaga ttcacttgga      4320
     ctgaagaagc agatgcagca ttaacaaagc tcaaaaccct tctcgtaaca gcccccgtgc      4380
     ttgcgaaccm cgacttcacg aagactttcg tgatcgagac tgatagttca gaccttgcta      4440
     taggagcggt gctgacacag aatcatgaag gggaaagacg accgattgcg tacttttcaa      4500
     agaagctctc gagtacccag cgtcggtata gtgccacgga aagagagtgt ctcgctgttc      4560
     tattgagtat agagaacttc aaacacttcg ttgaaggatc acagtttgta gtacaaacgg      4620
     atgcgatgag cctcactttt cttcgtaata tgtccattga gagcaaatca ccaagaattg      4680
     ctcgatgggc actgaaactg tcaaagtatg atctcctgct acagtatcga aaaggtagcg      4740
     aaaacattcc ggcagatgcc ctatcgagag ctgtgaatac cgtcgacgtt actctcaaag      4800
     atccgtatat cacgcagctc aagcagatga tcgaaaagtt tccagaaaag taccgcgatt      4860
     tcaacctcca agatggaaaa gtgtataagt tcattaccaa tacgtcggtt gtagaagata      4920
     atagttttag atggaagtat gtggtaccct tccacgaaag accggatatt atgcgcaaaa      4980
     ttcatgaaga agcacatctc ggtccggtta aaacgctggc taaaatacgg gagcggttct      5040
     attggccacg aatggcggcc gaaatcaaaa ggttttgcca gcgatgcgaw atttgtcgtg      5100
     aatcgaaagc tccgaacctg aacgtgactc ctcgttgtgg aaagccaaaa ctttgtacac      5160
     gtccatggga actcatttcc ctggattttc tcgggccgta tccacgcagc cgaaaaggaa      5220
     atgtttggat tttggtagta agcgatttct tttcgaaatt tgtgctagtg caatgtatgc      5280
     gtactgccac tgcacaatca gtatgtgcat ttgttgaaaa tatggtgttc aacctgttcg      5340
     gtgcgccttc tgtgtgtatc actgataatg cacaggtgtt taaaggagaa atgttcacca      5400
     aattgctaca aaagtataag gtaactcact ggaatctctc cgtgtatcat ccggccccta      5460
     acccgaccga acgtgtcaat cgcgtgatcg tcaccgcgat tcgatgttcg ttgaaccata      5520
     aacgggacca cagggattgg gatgagtctg tccaccaaat tgcgaaagca attcgtacga      5580
     acgtacacga cagtacggga tatacaccgt acttcgtcaa ttttggtaga aatatggtga      5640
     gcagtggaga agaatacgag ctcctgcaac gcgtccaggg taaccgaagt tcggaacacc      5700
     tgaaacgaga aacaagtaac ttgtttaata tcgttcgcga aaatctacta aaagcataca      5760
     agagatatag cacgccgtac aatctgcgag ccaatgcaaa acatcacttt gctgtgggag      5820
     aagtagtata caaaaaggaa atgcacttat cggacaagca gaagaacttt gtcggtaaat      5880
     tcgggaataa atttagtaag gttcgagtgc gtgaagtgct cgggaccaat acttatgtgt      5940
     tagaggatct gaagggaaac aggatccctg gcagttatca tggatccttt ctcaaacgcg      6000
     cataaaaaca ccagctatga cggtgcatcc gccgatgcac ataaacgagc cgatatgaac      6060
     aaaatactcg aagaggtgtc aggcaaaaat ccaacgtcga gatgtcactg tgtgtttcct      6120
     ccgttgttga tttattggta ccattagtgc cacttggtta tttaagaaaa taaacataat      6180
     cttgtagaac attgtttgat tcgttggttg tagattaaaa ttgaagtagg ttgaatgagg      6240
     aatcgttgca ttcatcactt tcactttttt tttgtgtaca tacttccccc aggcgaaaag      6300
     actaattatt agcattatct cattatatac gtacctcatt caatagccca gcaactcctt      6360
     tttatccata gtaaagtatg ttctaacgtt agcccaaaaa aatagcagat ttctccataa      6420
     ttttccaatt tttcaatagt ttgatgctga aatatcactt gttttgtttt ggttcccctc      6480
     actttccctt tcaattgaca atagcccggc cacgtatcgc tcgatatgac agatccgttt      6540
     gacagcattt ccacaacatc aagtaactta cagcatagat taacatttca tttggtccaa      6600
     agtatatttg tggcaaagta gtgtagttaa tggaataaga atgttcagag ttgtttctga      6660
     gtcgaagagg agaaaattag tgttattgaa cgaaaagtgc tcagatattt ctgaggttta      6720
     tttgtggtaa cgacgattac tcttctcaga cttttctgag gtaaaagtgt cgttagattt      6780
     cgttaagttg attagatgat taaaatgatc agacatttct gagttaaatt ggtttaggta      6840
     aatgaaaata tatctcagat atttctgagg tttggaataa agtttagtta aggtagtgaa      6900
     taaccagaag accaaagcca caacatacct gcaatagttt tcgaaataga ttacgttcaa      6960
     tacgattcat tcagattctt cattcaatca accttcagtg atgttcgatt cgtagttctt      7020
     aattaatatg taaaatcgcc gtgttttata aaaattttga aattttcgtt tgctcaaaat      7080
     tkttgttttg ttagaatggg cgagaa                                           7106
//
ID   Gypsy-226_AA-LTR repbase;    DNA;    INV; 1709 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-226_AA_;
KW   Gypsy-226_AA-I; Gypsy-226_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1709
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1056-1056 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1709 BP; 463 A; 317 C; 385 G; 542 T; 2 other;
     tgtaaggaca ttgtgaacca actttgaagc gtttgctttt cgtgtttgtt tttttctgta        60
     ttgctgtcag ccgttatgct gtcagtctgg gtaagtccgg tacaatgctg tcacttgtag       120
     aagttgtcca tagacaacaa ccaacaaaac gacacctagt ggttgatcat gtaaacccaa       180
     tggaatattc ctaaatttaa atctagtgga cagcaaatgc ctaattgcgt cgtagagaat       240
     aaatcggggc attatagtcc aaataatagc gagaattgac gatttagata atgcatctct       300
     cttaaatcga acaatagatg ggatttgcgc tgcagcgatt aggatcagcc caatcttact       360
     cgcgtcggtt tcatmattct tgtggagtgt ttaataccga tcagtcgaag tttttgaaaa       420
     gtgaaattga aaaktattgg aagtaattat agtgacttat actaaactcg aagtaagttc       480
     gcgtccgttt tagtctattt aaatagtttt aaatgtttaa tttgaattta tttctgtgtt       540
     tagcaaatca atttgtcgag tgtgaacgaa attggtagaa agttaccatt attgttaaag       600
     tgagtgttga attcaagtcc taaattcagg taagcctatt tgattaacat gcaagtgagc       660
     taataagtga gattatccgc gttgagcagg acaaccgagc ccagtcaacg tgggcggtta       720
     gtgcggagtc actgcaatcc agcgaccacg tgatcgatat actatcccag tctaccaaac       780
     cgacgcctac tagacgccgt ccaatttagt gtgaagcgta agccacatct cgtcgcattg       840
     ctgtcgcaaa agtcgtgcga cgaaacattc agtgtatcac gactcgcaag tcaatcagtc       900
     gcgtggcgca ggtcgtgcca tatctaacgg ccatcactcc acagtgctag gggatatctg       960
     taccccgaga aacgtcacca gcgcgcgagt ctagtcagtg gcgcgagttg ttggatgcaa      1020
     cattttgggt gagtcacact gggtggtcga ttttcgtctc gcaacaaccg ttggtggact      1080
     gcttgttcat tgaatttcga cgtggattgt caccgtggtt ccgaaaggac atccgtcgcg      1140
     ggatcccgaa agaagaaagg tcagatctgt cctttttagt tgctcacaag tcagaagcta      1200
     gaaaaagttg taaatttaaa acgtgacgtc acacacggtt aggaaattag gctttcctta      1260
     atttaataaa atcttttctg aaatcttctc gatcatttct cgataaattg atcgctttgt      1320
     actttcgcgt tcgcaacttg aatcttgaaa taaaacgttt acttctagtt tagaatacac      1380
     tccactttgc ttacgtcacg gatttctttt aaaatagatt taagattgga tttttcttat      1440
     tagttgctaa gcttattctt ctttgtttga tatttgagag ttgtaaatat ttgctttagt      1500
     ttttagtgtg aaattgatgt tggtaagttt gaatcggttt attgcctacg acgttttggg      1560
     tttgttgaag tgcgatttcg gttcgtttct ataattgacc tgccctgagg aaggcagtct      1620
     cgtccgggta atttatcaga gctgtcggtc cttctttaaa gaaggtggcg cgtaagccgg      1680
     cagcttaagg aacggaggag attgttaca                                        1709
//
ID   Gypsy-227_AA-I repbase;    DNA;    INV; 3020 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-227_AA_;
KW   Gypsy-227_AA-LTR; Gypsy-227_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3020
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1057-1057 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TACA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           422..2188
FT                 /product="Gypsy-227_AA-I_1p"
FT                 /translation="MATMQDVNVWPFQPISGDAPSASNPQLQFALSENGIQ
FT                 FNAIDNTFMRLVDQLKFSNTAVADLTQELSVMRSEMNSMRAETSRLSSVIE
FT                 KIRSGSTVPQQASTPNGGRCDEGGHVRVEQMRRGATSENIAMNSKLAVGNN
FT                 AMSDGYGRGHDNVLRRYVRDVNEKANNNLVGDGPNNKFVTRDLQNLFADRK
FT                 CTYENVEFGKDRNSRKTVIKSCCGSEAYGGLRGDYHLEAHAHDIGSRIEQQ
FT                 LSVSDAECAFSEFSGTDFYPVRKWIDDFEELSDSIGLTELRKFVIAKRKLT
FT                 GLAKISLNSTNNVSNWRTLKDILINEFEFSENSAVVHERLRNRKRKLGENV
FT                 LKYFLQMREIGAKANVDISSIITYTINGINDNGPDKTILYGSKSMDEFREK
FT                 LREYKRIKDNKYCRDYKSKSSASERFFSSGRPNGQKNFENRNDILPKTVKN
FT                 YNCGKGGRVPTKYPKNIGSNYVNLCYSDPSSLKRNSLSIFVHTIQCQALFD
FT                 SGSSVSLLREGWTIKMNFKINRNDRKRLMTFKGVIWTLGSVALNIVIENTP
FT                 LNITFDVIRDKDMENNIVLGKNLLIFGVVNITGIAQKTKFYA"
XX
SQ   Sequence 3020 BP; 1004 A; 449 C; 698 G; 845 T; 24 other;
     aatttggggg ctcgtccggg aacgcgtgat gaaactgtcg tgatattcgt tagtgtgcaa        60
     gattgagcgt gaagctgaaa tttgctgtga aatagcattg taaagaaact tttattttga       120
     gtgttctgaa tttcaatagt tttttagata gatatgaaat aaataattta gtgttaagac       180
     attgagtaag cttgattagt gttatttagc gataggaaaa ttgaattcgg attttttttt       240
     agcatactgt aaataaaaca aactgccact gattttttcc cgccgcgaaa aaaaactact       300
     agtgaactgt tgtaaaagtg gattgcattg aatttcagat ttgacctggg gttaagggtc       360
     attgtaccaa aatagataac gcgtgtgatt tggtgcggta aaacggaaca gaaaaaatag       420
     aatggcgaca atgcaagacg tgaacgtttg gccttttcag cccatcagcg gtgatgcgcc       480
     ttctgcttct aatccccaac tacagtttgc cttgtctgaa aatggcatac aatttaatgc       540
     aattgacaat acgttcatgc gtttagtgga tcagctaaaa ttttctaata cggctgtggc       600
     ggacctaacg caagagctta gtgtgatgcg tagtgagatg aactctatgc gggcagaaac       660
     atctcgttta agttcagtta ttgaaaaaat acgttctggc tctacggtac cacagcaagc       720
     aagcactcca aatggaggta gatgtgatga aggtggacat gtaagagtcg aacaaatgag       780
     acgtggtgcg acaagtgaaa atattgcgat gaacagtaag ctggctgttg gaaacaacgc       840
     aatgagtgac ggctatggtc gtggtcatga taatgtgttg agaagatatg ttcgagatgt       900
     gaatgaaaaa gcgaacaata atctggtggg tgatggcccg aataataaat ttgttactag       960
     agatttgcag aatctatttg ctgatcgtaa atgtacgtat gagaatgtcg agtttggaaa      1020
     agaccgaaat agtagaaaaa cagtgattaa gagctgctgt ggctctgagg cgtacggtgg      1080
     cttgcgtggt gattaccact tggaggctca tgcgcatgat attggaagta gaatagaaca      1140
     acaattatcg gtaagtgatg ctgagtgcgc attttctgaa ttttctggaa ctgattttta      1200
     tcctgttcga aaatggatcg atgattttga ggaactgtcg gattccattg gcttgacaga      1260
     gttacgcaaa tttgtaattg caaaacgaaa attaaccgga ttagctaaaa tttcattaaa      1320
     ctccactaat aatgtctcta actggagaac gttaaaggat attttaataa atgagtttga      1380
     gttttcagaa aatagtgctg ttgtgcatga gagattacgg aatcgcaaaa gaaaattggg      1440
     cgagaatgtc ctaaagtatt ttctgcaaat gcgggaaata ggggcaaagg ccaatgttga      1500
     catttcatca attattacgt acacaatcaa cggaataaat gataatggtc cagacaagac      1560
     tatattatat ggatcaaaaa gtatggatga gttcagagaa aagcttcgtg aatataaaag      1620
     aataaaagat aacaaatatt gtagagatta taagtcaaag tcttcagctt cagaaagatt      1680
     ttttagtagc ggaaggccaa atggccagaa gaattttgaa aaccgaaatg acatcctacc      1740
     caagactgtg aaaaattaca attgtggaaa aggaggtcgt gttccaacca aatatccgaa      1800
     aaatattgga agcaattacg taaatctctg ttattctgat ccttcttcgt taaaaagaaa      1860
     tagtttgtca atattcgttc atacaattca atgtcaagca ttatttgatt ccggttccag      1920
     tgtttctttg ctgagagagg ggtggacaat aaaaatgaat tttaagataa atcggaatga      1980
     tcggaaacgt ttaatgacgt tcaagggagt catatggact ttaggtagtg ttgcgttaaa      2040
     tatagtgatt gaaaatacac ctttgaatat tacatttgat gttataagag ataaagatat      2100
     ggagaacaat attgttttag ggaaaaattt gttaattttt ggcgtggtaa atattacagg      2160
     gattgcccag aaaactaaat tttatgccta acgaaataac ctggaggctt catatgtgca      2220
     aaatttcact tataaaatgt cgtgaaaagg ccttctacgt acaaaagtgg aggcgatatg      2280
     cgtccgtaaa tcctgtcatt tataatgacg tgcaatgcga gcgctagatt tctaccgaat      2340
     caacctgcga kcttatgcgg cttaacttgt gataacgaat stcggtttsm cggctkctac      2400
     ggaccgatgc gactcasctt gtacgagtgt acgagacgaa acaaaatgtm caggtkagct      2460
     cagmaamgaa gcgcgattta cgcgakgaac tcgtcaaact gacgmtttta tccgckggtt      2520
     tscsggtttg atgtaattag tatgaataaa cgaattgcaa cgtgaacttt catgcgattt      2580
     ctggtcgkct gkgcgagatc tmggttttat cctaaaaata kccaatttaa gagattsggm      2640
     accstgaatc ctgtmatttg kgcgtgtata attgtacgca gttcagaaat caatcaaaag      2700
     actctggaaa gtatttcgaa atgcttgata acaccaagaa gaagctaaat tcaaaatgtg      2760
     acgtcaatgc gatcaaaatt gggaacaatt taaggaaata tggtaacaga catcaagtag      2820
     cacagaatat aaagatttgg atgcagccaa cgatgaagat atggaggact acatccaaat      2880
     caaggagtaa ggctaagcaa agcgaagaag attgggagca aaacgacgaa agtgagagat      2940
     tgaagctagg caaggaaaga caacatgttg gacgatctga tagcaccatc cgggccggat      3000
     ggtggtcagg atggccgatt                                                  3020
//
ID   Gypsy-227_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-227_AA_;
KW   Gypsy-227_AA-I; Gypsy-227_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-269
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1058-1058 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 269 BP; 71 A; 59 C; 59 G; 80 T; 0 other;
     tgtgggaata acatcctatg cacccctacg tgttctccca gttacgcact gcaacccgag        60
     gatcctccga tcaagcagag gcaaagcata cgaagcagtt agtgttcgaa tgtgagagca       120
     accgttcggt cgcgtttaat ttgcttcaat atacttttaa attgattcgc cgtcttttaa       180
     aaggtctcga tatccgaagt tgtcatctgg aacgcgtatc ctttctttta gtgcgggaaa       240
     agttgagcta gtagttaaga tttactaca                                         269
//
ID   Gypsy-228_AA-I repbase;    DNA;    INV; 4307 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-228_AA_;
KW   Gypsy-228_AA-LTR; Gypsy-228_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4307
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1059-1059 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1783-2289] - Reverse transcriptase
CC   Positions [3863-4345] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..1006
FT                 /product="Gypsy-228_AA-I_2p"
FT                 /translation="MIVENENFARFEVAGSSPAESILGNGKSAKFSEASQF
FT                 GQADFDLGFESLAYDEPASGTSFGRNALRDEVIIYYGEVSEEHESEGENQL
FT                 DCSARSNSSSVRNPENFRNLSVNTNCYRNQQPVASITEAGNKSILESSSRT
FT                 NFSTIFLQANEISTMLPTFSGHVQEDVNHFLKIISNTKEALKLDDQTMKIL
FT                 LIKQLTAKAKYWLHSNTDFMLKSYNEIFEGLQARFAININVFQMRKQLARR
FT                 TWTGHEPFAEYYQSKQIIAQKLNLPEKEFVQYLVEGIENQVLRNQARMQNF
FT                 STVSRVGGNRSYVFHAITRDI"
FT   CDS           3668..4771
FT                 /product="Gypsy-228_AA-I_3p"
FT                 /translation="MIDNVLRLCHDNCGHLGIEKTINEIKKLYWFSCMRKY
FT                 VKKHIKNCLSCIFYNPSGKKEGFLKIIDKGNRPFNTLHLDHYGPISLPSSA
FT                 RFKYILVATDAFTKFTKFFPTKTTNSDEIMQHLKNYISFYSKPLRIVTDCG
FT                 TGFTSNKFKNFLNGHCIDHVKTAIRTPQANGQVERMNKTLTPMLAKLCNET
FT                 NFKWDQLLPKVEYIFNNTYNKSICNYPSILLFGQLQNNIANENCNFESFVL
FT                 NRQPSNEVQNLLEVREKAQQDNLKSQNYNKKLIDKKRIKTNNYREGDFVVL
FT                 KINESHKLSPKFKGPYKISKILPNERYVVVDIEGFQISNVPFNAVCSPQNM
FT                 RKWIDDDDLTDDCFDEDIENIRMAE"
FT   CDS           1087..3147
FT                 /product="Gypsy-228_AA-I_1p"
FT                 /translation="MTINVLKDTDKRQHNEKVKCDGLVKFRLLNSITNLTA
FT                 LFDTGSPISLIRRGLINEKDIQKIPYQKSFRGIGGKRVKVLGLFTNKILIQ
FT                 NILFSIDFHVVPDNVLNLLDAIIGRDIIMQPGILTIIENDIKMYSVDHENL
FT                 KSEDPVNEVFDNSLFNINSNSLQNLKIGDVSKDHLAIFSEIFQSKYLNYEK
FT                 PSILHTDYEMVISLKKGEAFHFKPRRLSFDQKRKVDEKIKELLDAGIIKES
FT                 SSPFASPIVLIPKKNDDIRLCVDYRKLNKDTVRDNFPLPVIEDLFDNLKDK
FT                 SYFSILDLKSGFHQIKISKECTKYTSFVTPSGQYEYLRVPFGLCNAPAVFQ
FT                 RFINKIFANLIKEGKLCVYLDDILIATKSIEEHFEILKQVFEILSQNLLEI
FT                 NLEKCKFLFNEIDYLGYTVNSKGRKPNSSHIETVKNFPPPKNSKDIHRFLG
FT                 LMSYFRKFIRNFAIIARPLYSLLQKDAVFRFEEEHTKAFTLLKQRLISAPI
FT                 LAIFDPLAETELHCDASSFGFGAILLQKQSDNKFHPVSFFSKKTDEFESKL
FT                 HSFELETLAVIHAIKRFHIYLAGKKFKIFTDCNALVQTLKKKEINPKINRW
FT                 ALFLESYNFELEYRNEDKMKHVDALSRMYMSKRVKNSDDKNNDSKDVICLL
FT                 DESEIERNIIIAQEQDIKLKNIKQILETTTFPNFLLLG"
XX
SQ   Sequence 4307 BP; 1626 A; 635 C; 739 G; 1307 T; 0 other;
     acgtcagaag tgggatccac caacggctac agctgaaaat ctatacagga gaatatcgaa        60
     accagagatg attgtggaga atgaaaattt cgcccgtttt gaagtagctg gaagttcacc       120
     tgcggaatct attctaggga atggaaaatc tgccaagttt tcagaagcaa gtcaattcgg       180
     acaagcggac ttcgatctag ggtttgaaag cctcgcctac gatgaaccag cttctggaac       240
     cagctttggg agaaatgctt tgagagatga agttattatc tactatggag aagtctcgga       300
     agaacatgag agtgaaggag aaaatcaact ggattgttcc gcaagatcaa actcatcttc       360
     tgtgagaaat ccggagaatt tcaggaattt atcggtaaac acaaattgtt atagaaatca       420
     acaacccgtt gctagtataa ctgaagctgg aaacaagtca attttggaat catcatcaag       480
     aacaaatttt tcaactattt ttttacaagc aaatgaaatt tcaacgatgc taccgacgtt       540
     ttctgggcac gttcaagaag atgtgaatca ttttttgaaa attatatcaa atacgaaaga       600
     agcactcaaa cttgacgatc aaaccatgaa aattttacta atcaagcaac tgacagcgaa       660
     ggccaaatat tggttacact caaatacaga tttcatgttg aaaagctaca atgaaatatt       720
     tgaaggttta caagctagat ttgccatcaa catcaacgtg tttcaaatga gaaaacagct       780
     tgcaagacgt acttggacag gacatgaacc atttgccgaa tattatcagt cgaaacaaat       840
     aatagctcaa aaactcaact taccggaaaa agaattcgtt caatatcttg tggaaggaat       900
     tgaaaatcaa gtacttcgta atcaagcaag gatgcagaac tttagtacag tcagccgagt       960
     cggaggaaac agaagttatg tttttcatgc aatcacccgg gacatttagc agcaaattgc      1020
     agatcaaacc aaaagccata tgatgctcgt attacaaatg gaaattcaaa acaaaaacat      1080
     aatgacatga caattaacgt gttaaaggac acagacaaaa gacaacataa cgaaaaagtt      1140
     aaatgcgacg gattggtaaa atttagatta ttgaatagta ttacaaattt aactgcttta      1200
     tttgacacgg gtagcccaat ctcactgata cgtcgaggtt taattaatga gaaagatatt      1260
     caaaaaattc cttatcaaaa aagttttcga ggtatcggtg ggaagcgggt gaaagttcta      1320
     ggattattca ccaacaaaat tttaattcaa aatatccttt tcagcattga tttccacgta      1380
     gttcccgata atgtgctaaa cctcctcgat gcaataattg gacgagacat catcatgcaa      1440
     cccggtattt taacgataat tgaaaatgac attaaaatgt attcagttga ccatgaaaat      1500
     ttgaaatctg aagaccctgt aaacgaggta tttgataata gtttgttcaa tatcaattca      1560
     aactcactac aaaatttaaa aattggggat gtttcaaaag atcatttggc aattttttca      1620
     gaaatttttc aatctaagta tcttaattat gaaaaaccgt ctatactaca cactgattat      1680
     gaaatggtaa ttagtttaaa aaaaggagaa gcctttcatt tcaaacctcg aaggttgtct      1740
     tttgatcaaa agcgtaaagt tgatgaaaaa atcaaagaac ttttggatgc aggtatcata      1800
     aaagagagta gttcgccttt tgctagccct atagttttga ttcccaagaa aaatgatgat      1860
     attaggctat gtgttgatta caggaaatta aacaaagata cagtacgaga taattttcca      1920
     cttccggtca ttgaagattt gtttgacaat cttaaagata aatcatattt ttctattctt      1980
     gatctgaaat ctggttttca tcaaataaaa atttccaaag agtgtactaa atacacatct      2040
     tttgtgacac ccagtggtca atacgagtat ttacgtgttc cttttggctt atgtaatgct      2100
     cctgcagtat ttcaacgctt tataaacaaa atttttgcta atctaatcaa agaaggtaaa      2160
     ctatgtgtgt atttagatga catattaata gctacaaaat caattgaaga acatttcgaa      2220
     attttgaaac aagtttttga gatattaagc caaaatttat tggaaatcaa tttagaaaaa      2280
     tgtaaatttt tgttcaatga aattgattat cttgggtata ctgtcaatag taaaggtcgt      2340
     aaaccaaaca gtagtcatat agaaacagtt aaaaattttc ctcctcctaa aaatagtaag      2400
     gatatccata gatttctagg tttgatgagt tacttcagga agtttattcg aaattttgct      2460
     attattgcta gacctttata cagtttgtta caaaaagatg ctgtatttcg tttcgaagaa      2520
     gaacacacga aagcttttac acttttgaaa caaagattga tttcagctcc tattctagca      2580
     atttttgacc ctcttgctga aactgagctt cattgtgatg ccagttcatt cggattcggt      2640
     gcgatattat tacaaaaaca gtcagataat aaatttcatc cagtcagttt ctttagtaaa      2700
     aaaacagatg aattcgaatc aaaacttcac agctttgaat tagaaacttt agctgtaata      2760
     catgcaataa aaagatttca tatttattta gctggcaaaa aatttaaaat attcactgat      2820
     tgtaatgcat tggtgcaaac gttgaagaaa aaggaaatta atccaaaaat aaaccgttgg      2880
     gctttgtttt tggaaagcta taattttgaa ttagaatata gaaatgaaga caaaatgaaa      2940
     catgtagacg ctttaagtag gatgtatatg agtaaaagag tcaaaaatag cgacgacaag      3000
     aataatgatt caaaagatgt tatttgctta ctagatgaat cagaaataga aaggaatatc      3060
     ataatagcac aagaacaaga tattaaattg aaaaacataa aacagattct tgaaacaact      3120
     acatttccaa attttttgtt attatagatg gcattttgtt tcgaaaggaa agtgagcgaa      3180
     atttattagt tgtgccaaaa atatgataga caatgttttg agactgtgtc atgataattg      3240
     tggacattta ggcatagaaa aaactataaa cgaaattaaa aagctatatt ggttctcgtg      3300
     tatgagaaaa tatgttaaaa aacatataaa gaattgtttg tcgtgcattt tctataatcc      3360
     atccggaaag aaagaaggat ttttgaaaat aatagataaa gggaatcgcc ctttcaacac      3420
     attacattta gatcattatg gtcccatttc attaccgtct agtgctagat tcaaatacat      3480
     tttagttgcg acagatgctt tcacaaaatt tacaaaattt tttccaacca aaacaacaaa      3540
     ttctgatgaa ataatgcaac atttgaaaaa ttatatcagt ttttatagca aaccattaag      3600
     aattgtgact gattgtggaa ctgggtttac ttctaacaag tttaaaaatt ttcttaatgg      3660
     gcactgtatc gatcatgtaa aaacagctat tcgtactccg caagcgaatg gacaagtaga      3720
     aagaatgaac aaaacattaa cacctatgtt agcaaaatta tgtaatgaga ctaattttaa      3780
     atgggaccaa ctgttaccta aggtagaata tatatttaac aacacttata ataaatcaat      3840
     ttgtaattat cctagtattt tactttttgg ccagttgcaa aataatatag caaatgaaaa      3900
     ttgtaatttt gaatcttttg ttttaaatag acaaccatcg aatgaagttc aaaacctttt      3960
     agaagtaaga gaaaaggcgc aacaagataa tttgaaatcg caaaattaca ataaaaaact      4020
     aattgataaa aaacgcataa aaacaaataa ttatagagag ggagattttg ttgtattgaa      4080
     aataaatgaa tcacataaat tatctccaaa atttaagggc ccgtataaaa tttctaaaat      4140
     tttgccaaat gaacgatacg ttgtagttga tattgaaggg tttcaaattt caaatgttcc      4200
     ttttaacgcg gtttgttcac ctcaaaatat gagaaaatgg atagatgatg atgatttgac      4260
     tgatgattgt ttcgatgagg acatcgagaa tatcaggatg gccgagt                    4307
//
ID   Gypsy-228_AA-LTR repbase;    DNA;    INV; 116 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-228_AA_;
KW   Gypsy-228_AA-I; Gypsy-228_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-116
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1060-1060 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 116 BP; 39 A; 18 C; 24 G; 35 T; 0 other;
     tgtagtaggc tttggtgcat agttctagag ctaagtaggc attgacttgg acagtgacaa        60
     ataagaccat tctgaaataa aacgttgaaa agataacatc gccttttatt cttaca           116
//
ID   Gypsy-229_AA-I repbase;    DNA;    INV; 5523 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-229_AA_;
KW   Gypsy-229_AA-LTR; Gypsy-229_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5523
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1061-1061 (2011).
XX
DR   [2] (Consensus)
XX
CC   'GTCC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1137..4877
FT                 /product="Gypsy-229_AA-I_1p"
FT                 /translation="MAQSNINSTLEPYRKGNSFGDWIERLGFFFNMNKVPD
FT                 EEKRDHFITLSGPTIFRELKLLFPNTNLAEVPYTEMITKLKARLDKTESDL
FT                 VQRLKFNLRVQQPDESLEDFVLSVKLQAEFCNFENFKQMAIRDRIVAGIRD
FT                 KSLQQRLLNEEKLTLETAEKLIATWEIARNNAKNMEYSNNVDQIASLKGFP
FT                 GARLNKLAATMELAGSANANVGADRGRGSVKNRLGYSPYHKDEWKQKQNRL
FT                 WRNRGQDKERNRQSNRPDYSQLICDFCGVKGHIKRKCFKLKNMHRDAVNMV
FT                 NQNTSGSSPDDFLSDMVNRMRTDSESENETDGENRNNIFQCLHVSCISKLS
FT                 EPCLISVEIENVLIDMEVDCGSSVTVMSKKQYFESFSKDLMKSQRNLVVVN
FT                 GANLGIEGEVDVFVKFKGISRNMRLLVLNCDNNFTPLLGRPWLDTLFPEWR
FT                 NFFVNSINFKHETDQIVDEIKIKYKDVFIKNFSKPIQGFEADLVLKSEVPI
FT                 FKKAYDVPYRLRDKVLEYLSKLEHEKVITPIKTSEWASPVIVVMKKNNEIR
FT                 LVIDCKVSVNKFIIPNTYPLPTAQDVFAGLAGCKLFCSLDLEGAYTQLSLS
FT                 ERSKKFMVINTLKGLYRYNRLPQGASSSAAIFQQVMEQILNGIEHVSVYLD
FT                 DVLIAGKDLDDCKQKLVIVLERLQKANIKVNWDKCKFFVTELVHLGHVISE
FT                 NGLMPCQDKISTIKQAKVPRNETELKSFLGLINYYHKFIPNLSSKLYYLYN
FT                 LLKTEVTFHWDSNCDEAFEGSKKALVEARFLEFYDPDKPIVIVSDASGYGL
FT                 GGVMAHLIEGVEKPIYFTSFSLNSAQQKYPILHLEALALVCTVKKFHKFLY
FT                 GKKFFVYTDHKPLVAIFGREGRNSIYATRLQRFVLELSIYEFEIQYRPSKH
FT                 MGNADFCSRFPLDNVVPADCDVELVNSINFGREIPIDFVKIACKTKEDEFL
FT                 QNIISFMTNGWPAKVNKQFIDVYANQQDLELIDGCLLYQNRVVIPASLKKS
FT                 VLNLLHANHAGIVKMKRLARRNVYWFGINSEIENFVTACDICNSMMIVPKT
FT                 KTESEWIPTTRPFSRIHIDFFYFEHRTXLLAVDSYSKWVEVEXMXNGTDCD
FT                 KVLRKLVAIFARXGLPDVLVSDGGPPFNAYSFVDFLKRQGINVLKSPPYNP
FT                 SSNGQAERLVRTVKDVLKKFLLDXEFSHLNVEDQINLFLINYRNNCLNIEG
FT                 NNPSQKIFCYKPKTFLDLLNPKSHYKNFYERPKCMIT"
XX
SQ   Sequence 5523 BP; 1798 A; 888 C; 1155 G; 1676 T; 6 other;
     gtccatttta tataagttcc ggtttacgga catttcagtt ggcgacgagt gtgaaaggga        60
     atcatattag tgcaaagtgt tggaaagtga agccatcgga ctagcagcag aagtgtttaa       120
     tcaatagcag aacacttgga ccgacgctat ttatacggac gccattctta cgacggattt       180
     tctttgcctc gattggcggt agtcagcagc gcgctagtgc aacagactgc atagtgcacc       240
     aattgctgga aggctttgta gaagagccgt tgtgacgtac ggcattcgtc ggcaattaat       300
     tgaccaaaat caatctggtg aggtaagata gttttggtga tttgtaattc ttagtggctt       360
     ggtttagcgc cattttgaag accgaacaat tgggtagaac cataaaagaa ctccatctct       420
     ttttcatcaa cagaacaata ccttaaggaa ttgaaaagaa atttttctta acaattacat       480
     tgttttattc tttttattaa gagtgatttt cttttattta aatagacagt tggtatagtt       540
     gaatccatat ttatagaccc taaactaaat taactataca tgaactactt tactgttgaa       600
     aggatctcca aatctcagtg tatgaataat gtatgaaact atctaaagaa acaatcaata       660
     aaatgaaatg aaatgaaatg aaatgaaatg aaataaatag acagtttctt ctggagtatt       720
     cagcagttgt tgccatcatt gttgagcgtt attgaaccgg cgtctgtagg aaattgggta       780
     gttttccaac cgcacgacta gactgaactg gttcgatcaa catcggttcc tatcttacca       840
     atcgttctgg ctatcatcga tttcggctcc tatcaatcgt ttcggcgcac ggtaggtcta       900
     aaatacgtca actgacggct tgcgtggttg ggtcgtcgaa gggcgaagtc cgcaagttgc       960
     aaactccaac tcctaccccg atcggcaaag gctgaaggac attttcggtg agttcaattt      1020
     tctttttcaa cctttgggaa ccatatagtg catctttttg taagaaacga ttgttttatt      1080
     ctagaaataa ttcgttcaat tgccgttgat tattagtttt tgtgattttc aataacatgg      1140
     ctcaatccaa cattaatagc acgttggagc cttaccgtaa gggcaattct ttcggggatt      1200
     ggattgaacg tttgggcttc tttttcaaca tgaataaagt ccccgacgaa gaaaaacggg      1260
     accattttat tactctgagt ggtcctacaa tttttaggga gctcaaattg ttatttccaa      1320
     atactaattt agcggaagtt ccttacaccg aaatgataac caagttaaag gcacgccttg      1380
     acaagacgga atctgatctt gtgcaaagat tgaaatttaa cttgagagta cagcaaccgg      1440
     atgaatcatt agaagatttc gtgttgtctg ttaagcttca agcagaattt tgcaactttg      1500
     aaaatttcaa acaaatggct attcgtgacc gcattgttgc tggtatccga gacaaatctc      1560
     tccaacaaag gttgttgaat gaagagaaat taacgcttga aactgcagaa aaactcattg      1620
     caacttggga aattgcgagg aataatgcga aaaacatgga gtacagcaac aatgtggatc      1680
     aaatagcttc cttaaaaggt ttccctgggg caagacttaa caaattggca gctacgatgg      1740
     agttggcagg aagtgcgaat gcaaatgtag gggctgaccg aggccgtggg tcggtcaaaa      1800
     atagattggg ttattctccg tatcataaag atgaatggaa gcagaagcag aatagactat      1860
     ggcggaatcg tggacaggac aaggagagaa atcgtcaatc aaaccgccct gattattctc      1920
     aactgatttg cgacttttgt ggtgtcaaag ggcacattaa acgaaaatgt tttaaattga      1980
     agaatatgca tagggacgcc gtgaacatgg ttaatcagaa cacttctgga tccagcccgg      2040
     acgatttcct aagcgatatg gtgaacagga tgcgaacgga ttcagagagt gagaatgaaa      2100
     cagacggtga gaatagaaac aatatttttc aatgtttgca tgtgtcgtgt attagtaaat      2160
     taagcgagcc ttgtttaata agtgtagaaa ttgagaatgt tttgattgat atggaagtgg      2220
     attgtggatc gtcagtaacc gttatgagta aaaagcagta ttttgaaagt ttttcaaaag      2280
     atttaatgaa aagccaaaga aatttggtag ttgttaatgg agcaaatctc ggtatagagg      2340
     gagaagtgga cgtttttgta aaatttaagg gaatttcgag aaatatgagg cttttagtgt      2400
     taaattgcga caataatttt acccctttat tagggagacc gtggttggac acattatttc      2460
     cggaatggag gaactttttt gtgaattcta taaatttcaa gcatgagacg gaccaaatag      2520
     tagatgaaat caaaataaag tataaagatg tttttattaa aaacttttct aaaccaatcc      2580
     aaggttttga agccgatttg gttttaaaat cggaggtacc gattttcaag aaagcctacg      2640
     atgtaccata ccgattacgt gataaagttc ttgaatacct atccaaatta gaacacgaaa      2700
     aagtaataac accaattaag acaagtgaat gggcttctcc ggtaatagtc gtgatgaaaa      2760
     aaaataatga aataaggctg gtaatagact gtaaagtttc tgtcaacaaa tttattatcc      2820
     caaatactta tccgctgcca acagctcaag acgtttttgc tggtttggct ggctgtaagt      2880
     tattttgttc attggatctt gaaggtgctt atacacagtt gtccttgtca gagagatcaa      2940
     agaagtttat ggtaataaac actctaaaag gactttatag atacaatcgt ttaccacagg      3000
     gtgcttcatc cagcgctgca atttttcagc aagtgatgga gcagattcta aatggaattg      3060
     aacatgtttc ggtttacttg gatgatgtgt tgattgctgg gaaagatttg gatgactgta      3120
     agcaaaagtt agttatagtc cttgagcggc ttcaaaaggc caacattaaa gtgaattggg      3180
     acaaatgcaa gttttttgta acagaattag ttcatttagg tcacgtaatt agtgaaaatg      3240
     gattaatgcc ttgtcaagac aaaatttcca ccatcaaaca agcgaaagta ccaagaaatg      3300
     aaactgaact aaaatctttc ctaggattaa tcaactatta ccataaattc attccaaatt      3360
     tatcttctaa gctttattat ttgtataatt tattaaaaac tgaagttaca tttcactggg      3420
     attccaactg cgacgaagca tttgaaggca gcaaaaaagc attggtagaa gctcgttttc      3480
     tagagtttta cgacccagat aaaccaatag taattgtttc tgatgcttca ggatatggtt      3540
     taggcggagt tatggcgcat ttgattgaag gagttgaaaa accaatatat tttacatctt      3600
     tttcactaaa ttctgctcaa caaaaatatc ctatcctaca tttagaagca cttgctttag      3660
     tctgcactgt aaaaaagttt cataaatttt tatatggtaa aaagtttttc gtttatacgg      3720
     atcataaacc actagttgca atatttggta gagaagggag aaattcaatt tacgctacaa      3780
     gactgcagag atttgtgcta gagttatcga tttacgaatt tgaaatacaa tataggccct      3840
     caaagcatat gggaaatgct gatttttgtt cacgtttccc tttggacaac gtagttcccg      3900
     ctgattgtga cgttgagcta gtaaacagta ttaactttgg tagggaaatc cctattgatt      3960
     ttgtcaagat tgcttgcaaa actaaggagg atgagttttt acagaatatt atttcgttta      4020
     tgacaaatgg atggccggca aaagtaaaca aacaatttat tgacgtatat gcaaatcagc      4080
     aggatttgga gttaatagac ggttgtcttc tatatcaaaa tagagtagta ataccagcgt      4140
     cgctaaaaaa gagcgtttta aatcttttgc atgcaaacca tgcgggaata gtaaaaatga      4200
     aacgacttgc taggcgaaat gtgtattggt ttggtatcaa ctctgaaatt gaaaattttg      4260
     tgacagcttg cgatatttgc aatagcatga tgatagttcc gaaaacaaag acagaatccg      4320
     agtggatacc aacgacgagg ccttttagta ggatacacat tgattttttt tactttgagc      4380
     accgtacttw tttattagcg gttgatagtt attctaaatg ggtcgaggta gaatkgatga      4440
     gmaatggtac agattgtgat aaagttttaa gaaagttagt agcaattttt gctagatwcg      4500
     gattgcctga cgtkctggta tcagacggtg gtcctccatt caatgcttat agttttgttg      4560
     actttttgaa gagacaggga atcaatgttc taaaaagtcc accatacaac ccttccagca      4620
     atgggcaggc tgaaaggttg gtaagaaccg taaaagatgt attgaaaaag tttctacttg      4680
     accsagagtt ctctcattta aatgtggagg accagattaa cttgtttcta attaactaca      4740
     gaaacaattg tcttaatatt gagggaaata atccttcaca aaaaattttt tgttacaagc      4800
     ccaaaacttt cttagatttg ttaaatccaa aatctcatta caaaaatttt tacgagaggc      4860
     caaagtgcat gataacctga caacttttaa aaatgcagtt ccagagcatg atgatattat      4920
     cataaagaaa gatggaaatg tcccgaataa attaactgat ccttttgaaa atctgacgcc      4980
     tggagacgaa atatggtata aaaaccataa ccctcatcat acggctaagt ggcttaagtc      5040
     aattttcatt aaaaggcact ctcgtaatac ttttcaggtg caaattggaa gcgtgctcac      5100
     catggcacac agcaatcaac ttcgcgtacc taagtgtggg gactcctata ataggcctaa      5160
     cgttcgttta attcggcaac agccgatgct tggcactact agccgggagg agttttatgg      5220
     cttcacagca gacgagctta gacgtgacag gaaaaggaga tacccggttg agaattcaac      5280
     gcatgatcca gataaattgc cggagatgag tcttaggcgt tcaaaaagac caagaaaagc      5340
     aaaaactgat gaagatttta tttatttgta ttaattttta gttgaaatat gctgatctct      5400
     tttctgagtg ttaattatta aaagttattg taattttcga tttctttgct ctgatatatg      5460
     aactaaaaac attgtaaata atttgaattt ataacttcca aagggggaag gactgaggtg      5520
     tcc                                                                    5523
//
ID   Gypsy-229_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-229_AA_;
KW   Gypsy-229_AA-I; Gypsy-229_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1062-1062 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 228 BP; 86 A; 38 C; 46 G; 58 T; 0 other;
     tgagtaaaaa tgtatataat atggctaaat aagcccttga gaataaatgt gtaaaaacac        60
     gaatgaattc cgttgaacag ttaacgaatg cataaaaggt tgtctgatga tgaccacgca       120
     gacgaaggtc tgaactgagc cgaaataaag aacgataagc agtcgtattt gatacctcaa       180
     agcaacaagt ttacttttac caatcgtatc acagtcttgc ttagggca                    228
//
ID   Gypsy-22_AA-I repbase;    DNA;    INV; 5063 BP.
XX
AC   AAGE02020536;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_AA_;
KW   Gypsy-22_AA-LTR; Gypsy-22_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5063
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020536; Positions    5789   10851.
XX
CC   Positions [4093-4563] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1242..2834
FT                 /product="Gypsy-22_AA-I_2p"
FT                 /translation="MIWIPRFLLSYSRWKKAGRSRCSDANKSKSGKLAKEW
FT                 QEWKSSLEYYFEACQVHDQKMMRSKMLHLGGPQLQKVFSTLEGTEDFPLVL
FT                 LEKRWYDVAVACLDAYFKPRKQDVLERHRLRSMKQGSNERFSHYVLRLRQQ
FT                 LKDCGLEKFSPEVKSVLEEIMLIDVIVEGCNSHELRRKILEKDQSLRDIET
FT                 LGELIESVRVQEQELKIEKKVIESSYGEVCKVQNTMKSRKERREERIVNRF
FT                 PTAASTWNKDARICFACGRQGHMSKSPLCPAKDQVCRRCKKPGHFENVCRK
FT                 HPSDSRFPIPPKKVQVVEEVCDGASETPQPEPLATLQSQSQPMPYRTAAER
FT                 KMYYTFYAGGETNVFQCTIGGVKSEIFIDSGSDVNLITSDAWENLKAQQVV
FT                 VSKCERGSNKILKAYASCMPLTILGSFHAVIEIGKRSIEAEFMVVQNGQRN
FT                 LLGDTTSKQLGILKIGLETNHVSSTHRGLYCFKRLPFGLVSAPEIFQRKMD
FT                 EMLADCEGTYWYLDDVGVEGSSVEEHDLRLKKVYI"
FT   CDS           3028..5016
FT                 /product="Gypsy-22_AA-I_1p"
FT                 /translation="MPSDSKRDAILSFRQPLNESEVRSFLGLANYMGKFIP
FT                 DLAALDEPLRRLTQKGVKFQWSDREESAFRAVKQSLANAQRLGFYNQNDTT
FT                 SVIADTSPHALGGVLIQTNTSGDSRVISYASKSLTDTERRYCQTEKEALAL
FT                 VWSVEKFQVYLIGREFNLVTDCKALVFLFTPVSRPCARIERWVLRLQSFQY
FT                 KIVHISGHTNIADVLSRLSTFVPTPFDETEELVVHDVASAAAQMVALKWKE
FT                 IEDQSCDDPEILEIADALKSGVFDNLPLPYKVISSELCLVNDVLLRGDKIV
FT                 IPNNLRGRVLQLAHEGHPGIRIMKANLRGNVWWPKMDLDVERFVKACRGCS
FT                 LVSAPNAPEPMIRKELPSSVWEQIAVDFLGPLPDGEHLLVCVDYYSRYIEV
FT                 VEMLEITTPCTIKELLKIFSRYGIPEVLRADNGPQFSSEEFRNFCDEFGIH
FT                 LESTIPYWPQMNGEVERQNRSILKRLRIAQELGQDWRHQLSKYLMMYHSSS
FT                 HTTTGRSPAELMFGRKMRTKLPYVPATTVENEGVRDRDRLEKEKGREYADN
FT                 KRRAKSSSIAVGDCVLAKRMKKDNKLSSEFSPEEFSVVQRKGTEVVIRSTK
FT                 SGKEYRRSVTHLKAIPGACNDKNQDEEVVEESGEKLAGDASSEEVDRASKR
FT                 VRKESKLLKDYITY"
XX
SQ   Sequence 5063 BP; 1567 A; 859 C; 1307 G; 1330 T; 0 other;
     tttggcgacg agcgaaaagg aattaataag gtatttatct ttaaaatatg tgatttaact        60
     gattattatc catttcgttg aaaacgggag gagatcagtt tatcgtcttt ggaattcaaa       120
     gatggcggaa ttaccgcgtg tagtgattgc gttacagctt tgaaccagtt tgactagagc       180
     cggccatttt gaagcatgtt tgaaattatt gaaagtggaa agataaattc aatttggaaa       240
     atgaatggat gggtgtggaa ttgaaacttt tttttactgt taattaaatg gcagtagata       300
     tcgaagtgag tttagagaga gttttaattt tataagaaat ttggttgtat ggccttcatt       360
     gatggaaaaa aactgaccgt ggtaggtgac ccgacaaata ttacgaatac aagaaatgat       420
     gtggttgtgt gcccagtgtg attcgagaaa caatggaatc gagaggaata atcgcggcag       480
     ggggccggat tcgaattgaa tgtgctaaga aaataggagt ttgccgtggt agggtacccg       540
     gtaaatgtaa ctagtgccag ggggcctagg agagaaccct tacggggtgc ctagttagag       600
     cggttaagct tgacagcaaa gctaagggtg agcactgtgg tagggtgccc ggttttgtac       660
     ctagggtcag aggacctcct ttagggaact gtggtagggc ccagttgctg cgggtagcct       720
     ttatgaagtt tatgggaaaa tctatgcagg atgcacgatt gaagtttcta gagctagggg       780
     gcctagaaag gtgacgatta gagctgtaat tggagctttg attgataatg cttatgacaa       840
     aggtataaag acaaaaaaaa aaatgtcaat cggagcaggg tgcacgattg aagtttctag       900
     agctaggggg cctagaaagg tgaagattag agcttcaata gaagatggta atgacaaagg       960
     tataaagata aaatttgcgt atcggagcag gggcacgatt gaagttccta gagctaggga      1020
     gcctagaaag gtgagattca gagccatatt tggagtttcg attgaaaata cttatgacaa      1080
     attgaagagg ggttagaaaa gtgagctatg attagagctt tcatttgaaa atgccaatga      1140
     tgaaagtaga aagatggaat ttgcccagtg cttaattggg agtcattttt aatgaaattt      1200
     gaagttctag tatatgatcc ttgacggtaa ttggtgtgaa aatgatttgg attccgcgtt      1260
     ttcttttatc ttattctaga tggaagaaag ccggccgatc ccgatgttca gatgcgaaca      1320
     aatcgaaaag tggcaaactt gccaaagagt ggcaagagtg gaagagctca ctagagtatt      1380
     attttgaggc atgtcaagtc catgatcaga aaatgatgcg ttcgaagatg ctacatttgg      1440
     gcgggccgca gctacagaag gttttcagta cgcttgaagg caccgaagat tttccgctag      1500
     tgttgctaga gaagcgttgg tacgatgttg ccgtggcttg cttggacgcg tatttcaaac      1560
     cgcgtaaaca agatgttctt gaaaggcacc ggctccgaag catgaaacaa ggatctaacg      1620
     aacgtttttc tcattatgtc ttacgtttgc gtcagcagtt gaaggactgt ggactggaaa      1680
     agttttcacc agaagttaag agcgtattgg aggaaataat gttgattgat gtaatcgttg      1740
     aaggttgtaa ctctcatgaa cttcggcgga aaattcttga gaaagatcaa tcgttacgtg      1800
     atattgaaac acttggagaa ttgattgaga gcgttcgagt ccaagaacag gaactgaaaa      1860
     ttgagaaaaa agtcattgaa tcatcatatg gggaagtttg caaagtgcaa aatacaatga      1920
     aatcacgaaa ggagcgcagg gaagagcgaa ttgttaatcg attcccaaca gcggcgtcga      1980
     cttggaataa agatgcaagg atatgtttcg cctgcggtcg acaaggtcac atgtccaaat      2040
     caccgttgtg tcccgcgaaa gatcaagttt gtcgacggtg caagaagccc ggacattttg      2100
     aaaatgtctg tcgtaaacat ccgtccgatt cacgatttcc aatccctcct aagaaagtgc      2160
     aagtcgttga agaggtatgc gatggagctt cagaaactcc gcagccggaa ccgctggcta      2220
     cgctacagtc acaatctcaa ccgatgcctt accgtactgc agcagaaagg aaaatgtatt      2280
     acaccttcta cgccggagga gagacgaatg tattccagtg tactatcgga ggagtgaaga      2340
     gcgagatatt catcgactct ggatcagatg tcaatttgat cacatcggat gcctgggaga      2400
     atcttaaggc acagcaggtt gttgtatcga aatgtgaaag gggcagcaat aagatattga      2460
     aagcgtacgc atcatgcatg cctctgacca ttctgggaag ttttcatgcc gtaatcgaaa      2520
     tcggaaagcg ctctatcgaa gcagagttta tggtagtcca aaacggacag cggaacttac      2580
     taggcgacac gacttcgaag caactgggaa tcctgaagat tggcttggag acgaaccatg      2640
     tttcgtccac gcatcgtgga ttgtactgtt tcaaacggct accttttggt ctcgtgtcgg      2700
     cgccagaaat atttcagcgg aagatggacg agatgctggc cgactgcgag ggcacttatt      2760
     ggtatctaga cgatgtcggg gtagaaggca gctctgtgga agagcatgat ttgagactca      2820
     aaaaggtata tatctgaaaa gctggtgaaa taaatcatga agtattgaac taatgactgt      2880
     tttttttact gtgtacattt ttttataaca tttctatagg ttcttgaaag atttgaggaa      2940
     aaaggcgttg ttcttaattg ggaaaagtgc aaaatacggg tgacggaatt tgaattcctt      3000
     ggatataaca taaacccaga aggtatcatg ccttccgatt caaaacgtga tgccatcctg      3060
     tcgtttcgtc agccactgaa tgaaagtgag gttagaagtt tccttgggct tgctaattat      3120
     atgggaaaat tcatcccaga tttggcagct ttagatgaac ctcttaggcg acttactcag      3180
     aaaggcgtaa agtttcaatg gagtgataga gaagaatctg cgtttcgtgc ggtgaaacaa      3240
     agtttggcga acgcgcaaag gctaggattt tataatcaaa acgatacaac atctgtcatt      3300
     gccgacacta gtccacatgc tctaggtggc gtactcatcc aaacaaatac aagtggggat      3360
     tcacgtgtta tttcttatgc ttccaaatcg ctgacagaca ctgagaggag atactgtcag      3420
     acagaaaagg aagcactggc ccttgtttgg agtgtagaga aatttcaggt ctatctgatt      3480
     ggcagggaat ttaacttagt aacagattgc aaagccttgg tttttctatt cactcccgta      3540
     tctcgtccgt gtgcacgcat cgaacgatgg gtactgcgcc ttcaaagttt ccaatacaaa      3600
     atcgtacata tttcaggaca tactaacatt gctgatgttc tgtcacgcct atcgactttt      3660
     gtcccaaccc cgttcgatga aacagaggag ttagtagtgc acgatgttgc atcagctgct      3720
     gcacaaatgg ttgctcttaa atggaaggaa atagaagacc aaagctgtga cgaccctgag      3780
     atcttggaga ttgccgatgc attaaaatca ggggtctttg ataatctacc attaccgtat      3840
     aaagtcatat catcggaatt gtgtttggta aacgacgtgt tgttacgagg tgataagatt      3900
     gtaataccca ataacctgcg tggaagagtt ttacaactgg cccacgaagg tcatccgggt      3960
     atcagaatta tgaaagcaaa tctacgagga aacgtctggt ggcctaaaat ggatttagat      4020
     gttgaacgat tcgtcaaagc atgccgagga tgttcattgg tatcagcacc taatgcaccg      4080
     gaaccaatga taaggaagga acttccatcg agtgtatggg aacaaatagc agtggatttt      4140
     cttggcccgc taccagacgg agagcattta ctcgtttgtg tagactatta cagcagatat      4200
     atcgaggtag tagaaatgct ggaaataacc acaccttgta cgatcaaaga actgctgaaa      4260
     atattttcac gttatggtat acctgaagtt ctacgagctg acaacggacc acaattttca      4320
     tctgaagaat tccggaattt ttgtgatgag tttggaatcc acctggagag cactattcct      4380
     tactggccgc agatgaatgg agaggtggaa cgccaaaacc gatccattct gaagcgtttg      4440
     cgcatagctc aagagcttgg gcaggattgg agacaccagc tgagcaaata tctgatgatg      4500
     taccactcat ccagtcatac cacaaccgga agatcccctg cggagctgat gtttggccgc      4560
     aaaatgcgaa caaagttacc ttatgttcca gcgacaacag ttgaaaatga aggagttaga      4620
     gatcgggacc gattggaaaa agagaaggga agggaatatg cggataacaa acgtagagca      4680
     aaatctagtt ctattgcagt gggcgattgt gtgctagcaa aacggatgaa aaaggacaat      4740
     aagcttagtt cggaatttag tccggaagag tttagcgtgg tacagaggaa aggcactgaa      4800
     gtggtgattc gttcgactaa atcgggcaaa gaatatagaa ggagtgttac tcatttgaaa      4860
     gctatacctg gagcatgtaa tgataaaaat caagatgaag aagttgtaga agaatcagga      4920
     gagaaacttg caggagatgc atcgtctgaa gaagtagata gggcttcgaa gagagttagg      4980
     aaagaatcga agttgctaaa agactatatt acatattgat gataacgagc tatttgtgtt      5040
     tttaaaataa agaagaggag agg                                              5063
//
ID   Gypsy-22_AA-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   AAGE02020536;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_AA_;
KW   Gypsy-22_AA-I; Gypsy-22_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-250
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020536; Positions    5539    5788.
XX
SQ   Sequence 250 BP; 69 A; 43 C; 71 G; 67 T; 0 other;
     tgtagagtcc gaagataaat ataaaaacct tgtttctaaa gacaccttga ttaactgcac        60
     gaacaacgat gatgaccgga ttgagaacgg tgttcggttg ccggagaggt ggaggggaga       120
     aagtgtgtgg cgattgatgt gaacggagtg tttcttcgtg gagtgtgttt ccgacgtgtt       180
     gtgaagtgtt tctgccattg agatatcgtg aggttaatta cctcgaaaac cccctggaca       240
     aaaccctaca                                                              250
//
ID   Gypsy-22_AnFu-I repbase;    DNA;    INV; 4400 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4400
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2907-2907 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..4349
FT                 /product="Gypsy-22_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEKLIEEFTRTGLVRKCETAGLPTAGTKEDLAKRLVD
FT                 AGLENMEGDPEKDPMSSTGYLDAETMPAVSTALVQKTDHVHPYSFRDVEDG
FT                 IETFGEDISRDVNEWIADFESVANIAGWSKSQMFIMCRKKLVKTARKFATT
FT                 LRDIKHYDQLRDALIREFGTIVRGKDVHRKLASRAKRKNENMLDYIYEMQR
FT                 IAASIELDQDSLIEYIVDGVTTEVKTRALLYRAKTIAGLKEELVLLERAER
FT                 KTEKPFLRNPRSATEAIPQKECYNCGEMDHFRKDCKKVESVPKKENRKEKK
FT                 TKCYSCGDSGHISTACPKKLKPAVNNITSRYPTISVKIDGHSFDGMIDTGS
FT                 DVTLLREDVVQTIRRKYKNSNRIVRGYGGERQCVRGELFVEAEVGIVKRKI
FT                 NFLVVLCKAIDTQVLIGMDFLNTVEYVISNSVVEIREKNDHCDQDDEQWIH
FT                 HLDCGVQESLDVPSKYEKEVLTIVSDYESGKLCDDSFENDKTVGEMRIKLH
FT                 DDEIVCARPRRLAPLEKQIVKEQVREWIKDGIVRPSFSPYSSAVVVVPKKG
FT                 GKHRVCIDYRELNKKIERDKYPTPNIEDQIDALAEARVYTTLDLKNSYFHV
FT                 KLSAESCKYTSFITTEGQYEFLRAPFGLCTSGSSFCRFINSVFKELIDAGE
FT                 ILSYIDDIIIPSRSEDEGLVKLRRVMELAAKANLQFNWRKCAFLKRRVEYL
FT                 GYSVYEGKIEPSQEKIEKVRHFPKPRTVKALQRFLGLASYFRKFVPDFAKR
FT                 SRSLTMLLKKDAEFVFNADADCAFEDLKAALSQYPVLMIFKPGVETEVHTD
FT                 ASKEGLAGILMQRSVEDGLFHPCYFYSRVTNSAERNYHSYDLEALAVVESL
FT                 KKFRYYLLGQKVTVITDCIAFKQSMSKVNPNARVARWFVVLSEFDYQIQHR
FT                 SAEKMKHVDALSRATIMRISLTVSKRIIQAQQEDAKIAAIRNAISSGECCE
FT                 DFHIVNGVLYKTEHGKEKVVIPTQIELSIIREAHEQGHFSVKKTKERLSDD
FT                 YYIADIESKIRKCVDNCVRCIVSERKRGKAEGELKPIPKGELPLDTFHVDH
FT                 LGPMPSTRKSYNYLFTVVDAFTKYVWLFPTKTTNAEEVVKKLKIVSEIFGD
FT                 PRRIVCDRGAAFTSGLFINYCAEREIELHTIVTGVPRGNGQVERIHRIIIP
FT                 ALTKLSVQNPEEWFKHVSYVQIAINNSWQRAIRMTPFELLTGVKMKTKADI
FT                 VIHNILEEELQNGFVNDRAELRKLAGQGIERIQQENIRSYNLRRKPVRKYQ
FT                 IGDLVGVPVTQFGVGRKVKAKFYGPYRISKVLPNDRIEVKKLDQELEGPQV
FT                 TTTATDCVKPWNNYGD"
XX
SQ   Sequence 4400 BP; 1340 A; 748 C; 1168 G; 1144 T; 0 other;
     tgggggctcg tccgggaaca gaattccgcg aataagtgta ttgtgctttg tgcgctgtgg        60
     taaacacttc gcgtgttgag agtgtactgt gtgtacgctg attacgctgt gtgcgttgtg       120
     tactgtgtgt acgctgatta cgctgtgtgc gttgtgtact gtgtgtacgc tgattacgct       180
     gtgtgcgttg tgtactgtgt gtacgctgat tacgctgtgt gcgttgtgta ctgtgtgtac       240
     gctggttacg ctgtgtgcgt cgggttagtg tgctgtgtgc acgccggttt tgctgtgtgc       300
     gttgcgtgta gtgcgtgttg cgcgcgtcgg tagaaagttc gataacacgt gtccattagc       360
     caaaaatgga aaagttgatc gaagagttta cgcgaacggg actagtgcgc aagtgtgaaa       420
     cggccggatt gccaacagcc ggtaccaagg aagatctggc aaagcggttg gtcgacgctg       480
     gcctagaaaa catggaaggt gatcccgaga aggatcccat gagttccacc ggttatctcg       540
     atgctgaaac gatgccagcc gttagcacag cattggtgca aaaaacggat catgtccatc       600
     catactcctt tcgcgacgta gaagatggca tagagacgtt tggcgaggac atcagtcgag       660
     acgtaaacga gtggatcgcc gattttgaga gcgtggctaa cattgccggg tggtcaaaga       720
     gtcaaatgtt tatcatgtgc cgaaagaagc tcgtgaaaac ggctaggaaa ttcgcgacta       780
     ctttgcgtga tattaaacat tatgatcagc tacgtgacgc gctaattaga gaattcggaa       840
     ccatcgtcag gggaaaggat gttcaccgga aacttgcatc gcgtgcgaaa agaaaaaatg       900
     aaaatatgtt ggattacata tacgagatgc aaaggattgc ggcgagtatc gaactcgacc       960
     aggatagttt gatcgagtac atagttgacg gtgtgaccac ggaggtcaaa actcgagcgt      1020
     tgctgtatcg agctaaaaca attgcgggtt tgaaagaaga gctcgtgttg ctggagcgag      1080
     ccgagagaaa aaccgaaaaa ccatttctta gaaatccacg atcggcaacg gaagctatac      1140
     cacaaaaaga gtgttataat tgtggtgaaa tggatcattt tcgtaaggac tgtaagaagg      1200
     ttgaaagtgt tccgaaaaaa gaaaatagaa aagagaaaaa aacgaagtgc tattcgtgcg      1260
     gtgacagtgg gcacatttcg acagcttgcc cgaaaaagtt gaaaccagca gtgaacaata      1320
     taactagtcg atacccgaca atttctgtga aaattgacgg acactccttc gatggaatga      1380
     tcgacacggg cagcgatgtg acattgttac gcgaagacgt ggtgcaaaca attcggcgaa      1440
     agtataagaa cagtaatcga attgttcgcg ggtatggcgg agagcgtcag tgtgttagag      1500
     gagagctatt cgtagaagcc gaagttggta tcgtaaaaag aaaaattaac tttcttgtgg      1560
     ttctgtgtaa ggcaatcgac acacaggtac tgatcggtat ggatttcctc aacacagtgg      1620
     agtatgttat ctctaatagt gtggtagaga tacgtgagaa aaatgatcat tgtgatcaag      1680
     acgacgaaca atggatacat cacttggatt gtggtgtgca agaatcgttg gacgttccca      1740
     gtaagtacga gaaagaggtg ctgaccatag tatcggacta tgagagtggg aagttgtgtg      1800
     atgattcctt tgaaaacgac aaaaccgtag gtgaaatgag gatcaaatta cacgacgatg      1860
     aaattgtgtg tgcgcgacct cgtcgtttag ctccgttgga aaagcaaatc gtgaaggagc      1920
     aagtgcgtga gtggattaaa gatggaattg ttcgaccatc gtttagtccg tactccagtg      1980
     cggttgttgt tgtgccaaaa aaaggaggaa aacatcgtgt gtgcatcgat tatcgcgagt      2040
     tgaacaaaaa gatagagcgc gacaaatacc cgacaccgaa cattgaagat caaattgatg      2100
     cattggctga ggcgcgtgtg tatacaacgc ttgatttaaa aaattcatat tttcacgtga      2160
     agcttagtgc ggaaagttgt aaatatacgt cgtttattac aacagaagga caatatgaat      2220
     tcctgagagc accattcggg ttgtgtacaa gcggcagttc gttttgcaga tttatcaatt      2280
     cagtgttcaa ggaattgatc gacgcgggtg aaattctgtc gtacatcgat gacattatta      2340
     ttccgtccag gagcgaggac gaagggctcg tcaagctacg acgtgttatg gagctagctg      2400
     caaaggctaa tctgcagttt aattggagaa aatgtgcttt cttgaaaagg cgcgttgaat      2460
     acctcggtta ttctgtgtat gaagggaaaa tcgagccatc gcaagaaaag attgagaagg      2520
     tgcgacattt tccgaagcca agaacggtta aggcattgca acgatttctt ggactggcaa      2580
     gctattttcg gaagtttgtt ccggattttg ccaaacgatc gcgttcgttg accatgctgc      2640
     tgaagaagga tgctgagttc gtctttaatg ctgatgctga ttgtgcattt gaggacctca      2700
     aagccgcgtt gtcgcagtat ccagtgctga tgattttcaa gcccggtgtg gaaactgaag      2760
     ttcacacaga cgctagcaag gaagggttag cgggaatctt gatgcagcgg tcggtagaag      2820
     atggattatt ccacccctgt tatttttaca gtcgcgtaac gaacagtgcg gagcggaatt      2880
     atcattcgta tgatttggaa gcattagcgg tcgtggaatc gttgaaaaaa ttcaggtatt      2940
     accttttagg acaaaaggtt acggtcataa cagattgtat tgcattcaag caatcgatgt      3000
     cgaaagtaaa tccaaatgca agagtcgcta gatggttcgt tgtgttgtca gagttcgatt      3060
     atcagattca acatcgatcg gctgaaaaga tgaaacatgt agatgcgtta tctagggcga      3120
     ctataatgcg aatatctctc acggtgagca aaagaattat tcaggctcaa caggaagatg      3180
     cgaaaatagc agcaattaga aatgcgataa gttctggtga atgttgcgaa gactttcata      3240
     ttgttaacgg tgtgttatac aagacagaac atggtaaaga aaaagttgtc ataccaacac      3300
     aaattgaatt gagcatcatt agggaagctc atgagcaagg tcattttagt gttaaaaaga      3360
     caaaagaacg tttatcggat gattactaca ttgctgatat agagtccaaa ataaggaaat      3420
     gcgttgataa ttgcgttagg tgtattgtga gtgagaggaa acgtggtaag gctgaaggtg      3480
     agcttaaacc tatcccaaaa ggggagttgc ccctcgatac ttttcatgtg gatcatttgg      3540
     gtccgatgcc ttcgacacgt aaatcgtaca attacctttt tactgtagta gacgcattta      3600
     caaagtacgt atggttattc ccaacaaaaa ccacaaatgc ggaagaagtg gttaaaaagt      3660
     tgaagatagt ttcagaaata ttcggagatc cgagacgcat agtttgtgat cgtggagcgg      3720
     catttacgtc cggattattt ataaactatt gtgcggaacg cgaaattgaa ttacatacaa      3780
     ttgtaacggg tgtcccccga ggaaatggac aagtggagag aatccacagg attattatac      3840
     ctgctttgac aaagttatcg gttcagaacc cagaagaatg gtttaagcat gtcagttacg      3900
     ttcagattgc gattaataat agttggcagc gtgccatacg aatgacaccg tttgaacttt      3960
     taacaggagt aaaaatgaaa actaaagcag atattgttat acacaacatt ttggaagagg      4020
     aattacaaaa tggatttgta aatgatcggg ctgagttaag aaagttagct ggccaaggaa      4080
     tcgaaaggat tcagcaagaa aatattcgat cttacaattt gcgtcgtaaa ccggtacgta      4140
     aatatcaaat aggagatttg gtgggtgtac cagtgaccca atttggggta ggacgtaaag      4200
     tgaaggctaa attttatgga ccttatagaa tttcaaaggt acttccgaat gatcgaatag      4260
     aagtaaagaa attagaccag gaattagaag gtccacaagt aacgacaaca gccacggatt      4320
     gcgtgaaacc gtggaacaat tatggtgatt aaaatatggt aaatctttct tccaggtgga      4380
     agaacagtca ggaaaggccg                                                  4400
//
ID   Gypsy-22_AnFu-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-122
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2835-2835 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 122 BP; 41 A; 19 C; 26 G; 36 T; 0 other;
     tgtaggagtg tgagtgtcac tcggtgacca ataattctgt atataagttg ttgaaaataa        60
     aatagcaaaa cagttgctgc ctggacttca aaaaggaaac aagcgttatt tgctttccta       120
     ca                                                                      122
//
ID   Gypsy-22_AnMe-I repbase;    DNA;    INV; 5841 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5841
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6834-6834 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1311..2303
FT                 /product="Gypsy-22_AnMe-I_1p"
FT                 /note="gag."
FT                 /translation="MKRTTRATRTPRRIITAVGNIVRHKMAPKLDIQLALK
FT                 LIKSFDGTPTLLNAYIESIELLQDYAQEVDEKEILKFVRTTLVGIAHGVID
FT                 TAETLKQAFVLLRTRFSVQLTPLAVEKEILSLRQGAKSISEFGLELEKMAA
FT                 KLAAAHVSTGTFETEFAAHNIVNPIVIRAFIQGLNKANTKFFLQARNPSTL
FT                 NKAISDALECEPVKSAGEDREMTLWCSYPQNMRRYSRRPHHSYYPRSFYNQ
FT                 PYRGSNSQRFGNNSSSENQSRFTNNNNRGTYRGRPYSNNHFSQLPSNNNSN
FT                 RRNNTTTRVQLASSNPLESVNGNIPESDIEHEEIINLFR"
FT   CDS           2290..5784
FT                 /product="Gypsy-22_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LIYFAKLHFNSSVKAKFYLFGEYHDLVLDTGATCCVL
FT                 NLNYLPKNAIIDKTIVLKMYGINGPAKSLGCINTIISTDSNSFHIVFHVVD
FT                 TLPSHIVGLIGADFLKKHKAILNFGNMDLICTTNNNAVNLIIPPRTEIVTF
FT                 FETAETNTCVVLNQVLQPNVYVANSIAHPKNGKLPIRIANFQNKTVTLAKI
FT                 LPIIKPATDYKILELNTPRHDSNHANQLLKELKLTHLSEPDRSIIGKICIK
FT                 YNDVFCLQNDQLSTTSIYEASLKVNNNTMPIYSKPYRLPYSQKAEVENQIN
FT                 KMLKNKTIEETQSEWNSPILLVPKKSADDTKKWRLVIDYRKVNTVLQNDKF
FT                 PLPNIDEVIDTLSGCKYFSHLDLSQGYYQCPLRKKDRPITAFTTPTGQYQM
FT                 TKLPMGLKISPSTFSRMMTVAMSGLNTEQCLIYLDDIIVFGKTIEEHNKHL
FT                 MNIFERLRKVNLKLNPEKCHFLKEELIYLGHYISAEGIKPDPSKLECIQNW
FT                 KAPTSADETKRFVAFANYYRKHIKNFAAICMPLNRLTRKGVPFEWTPDCQF
FT                 AFEKLKESFVKPPILDFPDFSSTNTFNLHTDASNSAIGAVLSNQNGKPISF
FT                 ASRALNKAELNYATIEKELLAIVWSIKHYRPYLFGRHFNIFTDHKPLTYLF
FT                 TMNDPSSRLTKFRLALEEYNFTVCYKKGAENVIADALSRLPISELRAMSVR
FT                 DEVLISTRSKTESNDTCEDINESAISKVTHVELQLNPNTKDLIVSNHKIIL
FT                 PQSTTIVRLRGMIVRIKSYIKSLKSKIYLVIRKRDEHTTKFMENLKTLNEK
FT                 GMPKIIILNEDVKVLGEREKAKRLIVMNDYHTLPTAGHAGIQRTINTIKQK
FT                 YTWPGIDKDVRDMIAKCKHCQLYKSNKPFKIPLKITDTANEAMEKIFIDLV
FT                 GPLVNSNGFEYILTTQCDLTKFITATPITNKRTDTVARTFVEKVILKYGVP
FT                 RTICTDRGTEFLSGLFSEICKVLQIQKLQSTAYHHETVGALENSHKQLGNF
FT                 LRIYSEEKALDWFQWVNFYEFAYNNTVHTATGYTPFYLMHGRQANVPTSII
FT                 NESAKKVRYNLDDYANVLQIKLRIAHAEVRERLIKNKQKSKIHYDEKTKTK
FT                 MFQPGNQVLIREENKKKLEPPYTGPYTVIKDEGENVRLEDHNKSEVIHKNR
FT                 LKKWHN"
XX
SQ   Sequence 5841 BP; 2166 A; 1145 C; 999 G; 1531 T; 0 other;
     tggcgatcct gccaggagct gttcgcttgg atggttaata aagtaccgtg tgccggtagc        60
     cgtttacgta taacacaata atcagtgcaa cgtggtgaag tgaaagtgta agtgccgcaa       120
     agtattggac agtgttaaca aaagaggatc gacgcaacag ccaacaaaaa cgaggacgaa       180
     gagagacgaa taaccctcag agcgacgctc atcccgatcg aagtccatgc gcacgcatac       240
     aaccacgcgc acacgccacc taactgcaga acgcgctaca caaacgtacc gtccatcgca       300
     cacatcgtga gccgactcgt acaccgtttc atcgcacgca gcgtgagccg acgcgtgcac       360
     cgttccatcg cacgcatcgt gagccgactc gtgcaccgtt ctaccacacg catcgtgaga       420
     cgacgtgtga ccgttctatc gcacgcatcg tgagacgaca ggccgaaaaa actgaccgag       480
     aggaaagctg cagttacaaa aaaaaaaaaa aaaaaaaaaa aaacgccgca aaaagacacc       540
     gtaagccgtc acgtgaagac aatccaagcc gccatcgcag tgtctatctg aagacatcta       600
     tatcccgcca tcgcgccgag caaaaccacg cggtctgaag acacctatat cccgccatcg       660
     cgctgagcaa aaccacgaga tctgaagaca tctatatccc gccatcgcgc tgctcaaaac       720
     catgcggtct gaagacatca tactaagctg cacacactta acccttcgag agcaaggtac       780
     gtaaccacaa aattgccaca tatttttttt tttaaagaga gctagctaga taatttaaat       840
     tatttttttt ttgttcaatt gcgtcaaatt gcgtttatat ttattatatt tattttaaac       900
     tgcgtaaact caaaccgcta acaaatcgag taaaaagtgt taaaccagtg ctaagtgaaa       960
     aaaaaaagct aaaactatga tccctatatt ttctcataat tagttatcgc gttgttgatt      1020
     ttaaatagtt attcaataca ttcaaatccg tcctatagct caacctgaaa gtgcatttat      1080
     tactaaatcc attctacgta aattatgcta tcaaagtgtt tgattgtgtt gaaagttcga      1140
     cgaatgctat aaagtcctac aagcttgtgg ggtgatcgtt cgtcattggt ttcagtccgg      1200
     tttcttgctt ttgatcgttt tcctttttaa caatattggc atattcctga atttaaaaca      1260
     atttgaataa accttaacca tttaacaaaa ggatctcgtc ctaaaccttc atgaaaagaa      1320
     caactcgcgc tactcgtaca cctcggcgca tcattactgc agttggtaat attgtaaggc      1380
     acaaaatggc tcccaaactt gatattcaat tggctctgaa gttgattaaa tcgtttgatg      1440
     gtacacccac attactaaat gcatacattg aaagtatcga attgttgcaa gattacgcac      1500
     aagaagtaga tgaaaaggaa atcctcaagt ttgtgagaac tactttagtt ggtattgccc      1560
     atggagttat cgatacagca gagacgctaa aacaagcttt cgttcttcta cgaacacgtt      1620
     ttagtgtgca actaacacca ttagccgtgg aaaaagaaat cctgtctcta agacaaggtg      1680
     ctaaatcgat ttctgaattt ggactagaat tggagaaaat ggctgctaaa cttgctgctg      1740
     ctcacgtgtc tactggaacg tttgaaactg aatttgccgc gcataatata gtaaacccta      1800
     tagtgattcg tgcattcata caaggtttaa acaaagccaa tacaaaattc ttccttcaag      1860
     ctcgcaaccc ctctactcta aataaagcca tatctgatgc tttggagtgc gaaccagtta      1920
     aatcagctgg agaggataga gaaatgacac tttggtgttc atatccgcag aacatgcgtc      1980
     gatatagcag acgccctcat cactcgtatt atcctagatc attttataat caaccttacc      2040
     gtggatccaa ttcacaacgt tttggtaaca attcctcaag tgaaaatcaa tcaagattta      2100
     ccaataataa caacagagga acgtatagag gtagacctta ctccaacaat cactttagtc      2160
     agttaccatc taacaataat tccaatagac gaaataatac aacaactcga gtgcaattgg      2220
     catctagtaa tccattagaa tcagttaacg gtaacatccc agaatctgat attgaacatg      2280
     aggaaataat taatttattt cgctaagtta catttcaata gcagtgttaa agcaaaattt      2340
     tatttatttg gtgaatatca tgatcttgtc cttgatacag gagccacctg ttgtgtatta      2400
     aatcttaatt acttgcctaa aaatgcaatt atcgataaaa caattgtgtt aaaaatgtat      2460
     ggaattaacg gtccagcaaa atccctagga tgtattaaca ccatcatttc tacggattca      2520
     aatagttttc atatagtgtt tcatgttgtg gatacattgc cttctcatat cgtaggatta      2580
     ataggagctg attttcttaa aaaacataag gctatcttaa actttggaaa tatggattta      2640
     atttgtacta ccaataataa tgcagtaaac ctaataattc cgcctagaac agagattgtt      2700
     acattttttg aaacagcaga aaccaatact tgtgttgtat taaatcaagt gcttcaacca      2760
     aatgtgtatg tagcaaattc tatagcccat cctaaaaatg gtaaacttcc aattcggata      2820
     gcaaatttcc aaaacaaaac tgtaacttta gcaaagatac ttccaatcat aaaacctgct      2880
     acagattata aaatattaga actcaatact cctcgtcacg atagtaatca cgcaaatcaa      2940
     ctattaaaag aactcaaact aactcattta tcggaacctg atagatctat tattgggaaa      3000
     atttgcatca aatataatga tgtattctgt ctacaaaacg atcaattaag cactacttca      3060
     atttacgaag cttccttgaa agttaacaac aatactatgc caatatattc caaaccttat      3120
     agactaccct actcccaaaa ggcagaagta gaaaatcaaa ttaacaaaat gttgaaaaat      3180
     aaaactatag aagaaacaca atcggagtgg aatagtccaa tcttattggt ccctaaaaag      3240
     agtgctgatg atactaagaa atggagactc gtaatagact accgaaaggt aaatacggta      3300
     ttgcaaaacg acaaatttcc tctacctaac atcgatgaag tcattgatac gttgtctgga      3360
     tgcaaatatt tttcgcattt agacttatcc cagggatact atcaatgtcc attacgaaaa      3420
     aaagacaggc ctattacagc ttttacaacc cctaccggtc aataccaaat gactaagcta      3480
     ccgatgggat taaaaataag cccatctacg ttttcaagga tgatgacggt agctatgtca      3540
     ggattaaata cagaacaatg tctgatatat ctagatgaca ttatagtatt tggaaaaaca      3600
     atagaggaac ataacaaaca tttaatgaat atatttgaaa gattaagaaa ggtaaaccta      3660
     aagctgaatc cggaaaaatg ccacttcctt aaagaagagt taatctacct aggtcactat      3720
     atttccgcgg aaggtataaa accagatccg agcaaattgg aatgcatcca aaattggaaa      3780
     gccccaacat ctgctgatga aactaagaga tttgtagctt ttgcaaacta ttacagaaaa      3840
     catattaaaa actttgctgc aatatgcatg ccactaaatc gtttgacaag aaaaggtgtt      3900
     ccctttgaat ggactcctga ttgtcaattt gcgtttgaaa aattgaaaga atcatttgtt      3960
     aaaccaccga ttttagattt tccagatttt agttcaacaa atactttcaa tttgcacact      4020
     gatgcctcca acagtgccat aggagcagtc cttagtaatc aaaatggaaa accaatatca      4080
     tttgctagta gagcattaaa caaagccgaa ttaaattatg caacaattga aaaagaacta      4140
     ttagcaatag tatggtcaat taaacattac cgtccctact tatttggaag acattttaac      4200
     atcttcacag atcataaacc tttaacgtat ctatttacca tgaacgatcc ttcaagccgc      4260
     ctaactaaat ttcgtttagc gttagaagaa tacaacttca ccgtctgtta caaaaaagga      4320
     gcagaaaatg taatagcgga cgccttatcc cgattgccaa tttctgaatt gagagccatg      4380
     agtgtgcgag atgaagtgct aatatctacg agatccaaaa ctgaaagcaa cgatacttgc      4440
     gaagacatta atgagtcagc aatatctaaa gtaacccatg ttgagcttca gttaaatcct      4500
     aatactaaag atcttattgt ttctaaccac aaaataatat taccacaatc caccactatc      4560
     gttcgcttac gaggaatgat agtaaggata aaatcttaca tcaaatcgtt gaaaagtaag      4620
     atatatttgg taataagaaa acgtgatgaa catacaacca aattcatgga aaacttaaaa      4680
     accctcaatg agaaggggat gccaaaaata atcatactaa acgaagacgt aaaagtactt      4740
     ggagaacgag aaaaagcaaa gagattgatt gttatgaatg attatcatac actaccaacc      4800
     gcagggcacg caggaattca aagaacgatt aatacaatta agcaaaaata cacttggccc      4860
     ggaatcgata aagacgttag agatatgata gcaaaatgta agcactgtca gctttataaa      4920
     tcaaataaac catttaaaat tcctctcaaa ataacagata cggccaatga agcaatggag      4980
     aagattttta tagaccttgt tggtccccta gtaaattcta acggatttga atatatctta      5040
     actacgcaat gcgatctaac taaattcata acagccacgc caatcacaaa taaacgaaca      5100
     gatacagtag cacgaacttt cgtagaaaaa gtcatcctaa agtatggagt gccaagaacc      5160
     atttgtactg acaggggaac tgaattttta tcaggattat ttagcgaaat atgtaaggta      5220
     ttgcaaattc agaaattaca atcaaccgct taccatcacg aaacagttgg agcgctggaa      5280
     aattcacata aacagctagg aaatttctta cggatatata gcgaagagaa agcactagat      5340
     tggttccaat gggtaaactt ttacgagttt gcttataata ataccgtgca taccgctaca      5400
     ggatatacac cattttacct aatgcatgga agacaggcta atgtaccaac cagcataata      5460
     aatgagagcg caaagaaagt gcgatacaat ctagacgact atgcgaatgt attacaaata      5520
     aaattgagaa tagcccatgc agaagtcagg gaaaggttga taaaaaataa gcaaaaaagc      5580
     aaaatccact acgatgaaaa aacaaaaacg aaaatgttcc aaccaggcaa tcaagtacta      5640
     atcagggaag aaaacaaaaa aaaattagaa cctccataca ctggtccgta caccgtaatc      5700
     aaagatgaag gagaaaacgt taggctcgaa gatcataata aaagcgaagt aatacacaag      5760
     aataggctca agaaatggca taactaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5820
     aaaaaaaaaa aaaattgggc g                                                5841
//
ID   Gypsy-22_AnMe-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-244
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6859-6859 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs. The consensus is ~97%
CC   identical to that of RETRO43_AG_LTR.
XX
SQ   Sequence 244 BP; 68 A; 55 C; 57 G; 64 T; 0 other;
     tgttatggga tctgcatgct aaggttagcg tagtgtaacg catgctttag tttatagcaa        60
     acccgaagtt agggagtgcc cgcgagaggc actcagttag gctttataag tagtggcaat       120
     gtggtaacga agctctctct tttgctcgac gccgaagcga tcggttcgac acacacacac       180
     ccatcctgtt atcttaagtg gtgataataa aaagtacttg taacccctgt aaccccacaa       240
     aaca                                                                    244
//
ID   Gypsy-22_CQ-I repbase;    DNA;    INV; 6852 BP.
XX
AC   AAWU01028702;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_CQ_;
KW   Gypsy-22_CQ-LTR; Gypsy-22_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6852
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 423-423 (2011).
XX
DR   Genome; AAWU01028702; Positions   15044    8193.
XX
CC   Positions [2765-3226] - Reverse transcriptase
CC   Positions [4514-4969] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           645..1835
FT                 /product="Gypsy-22_CQ-I_3p"
FT                 /translation="MPKNKREKSALKRAREFFPQNFSDTEESDSSVESNHD
FT                 LAHIPIKDTPEIKNLTIEFNMEQIGQQLAEMAANLNNLLAEQQRQQQLINA
FT                 LGAQQAGQAAQAPVAIPAAPPQHANFFAIPDPIKHGISKFDGNKKQLNAWL
FT                 SSVETTLQQLQPYYTDDQNAMFLRTIINGKIEGRAKDKLCANGNPTTFEEV
FT                 KSILIHHLGDHQDLTFYKCQLWQHVKTPNTTLYSHYNSIKETIQIIKNLSQ
FT                 QDPDYRTAWNVMNKSIEQDALAAFLAGLPKDMFGHAIAAKPVNIEEAYAFV
FT                 CKFKSSENLANNINNRSFKKNTEQNKIITENKPQKFKINPHQQNNSQGQQN
FT                 KNDEPMEIGSTNSRLTLNRRQFNNNENLDENTSESEEESVDLNFCWATGSQ
FT                 TET"
FT   CDS           2915..5251
FT                 /product="Gypsy-22_CQ-I_1p"
FT                 /translation="MDPESRSKTAFSTALGHFEFNRMPFGLKNAPATFQRG
FT                 MNNILAEFIGTICFVYLDDIIIIGKNLKDHMENLSKVLERLEKYNLKIQLD
FT                 KCEFMKRETEFLGHVITQDGIKPDPGKIEKILDWKLPETKKEIKQFLGLSG
FT                 YYRRFIKDYSKITKPMTKYLHKSEKSIDLKDVSYKSAFEELKKIIASDQVL
FT                 AYPDFDKPFILTTDASNFALGAVLSQMQEKVEKPIAFASRTLTKCETRYST
FT                 IEKEALAIMWAVQKFRPYIYGNECTLYTDHKPLQYIKTCNKNQKILTWRDE
FT                 LENYKLNFLYKPGKANVVADALSRKIETKDDEDNFEVNANDILSISEHSSE
FT                 DLDLSTQSDDDTIHSAEESAEDYVHFVSRPVNYYRNQIVFKIAHFTSVIHE
FT                 SPFTHYHRHTIIQPTFSKNDVTDFFKKYHNGKQTAIIAPENIIQIIQDVYK
FT                 ENFNNKGHFVLTQLIVEDVCNHDRQNVIISKEHERAHRGINEVEAQIKRAY
FT                 FFPKMRNLIKMHINSCHICNTHKYERKPYNIKISPRPVTEKPFTRVHMDIF
FT                 IINNNSFLSLVDSFSKHLQMYFIKHKNLVQVQKALAKYFTSFGFPNEIVTD
FT                 HETTFRSIQLKNYLAQLGVELKYASSSESNGQVERTHLSIAEIFNTNKHKF
FT                 AGMQTKSIIKLSVALYNDTIHSATKFTPNEIIFNQNNIVNPGELIEKAQEM
FT                 FLEARVNLEKAKTRQTKNNDQKEDPPQLEDDQEVFVIPNVRSKTAPRAVMT
FT                 KIKEVKRKTFKNLRNVKRNKSKIKRLKK"
FT   CDS           5339..6853
FT                 /product="Gypsy-22_CQ-I_2p"
FT                 /translation="MILFIIVYLFTTSLCQELEIKHLENKPILVIKHKNCK
FT                 IQSGNIKIIHTVNLTDLETTINLLTNIAYTNIDGKNQLTQIVKYKVKQLYA
FT                 NFYQLKPSNHRRQKRWDTVGTTWKWIAGNPDAEDLRIINKTLRQLIEENND
FT                 QYYVNEQLGQRIQHLTNNIAQNLADNRIIKNEIDILTIIVNIDTVNTLLTN
FT                 IQDAILLSKALVTSSKILSPKEIHTIKQLIEQQGVLVEMPDEAFNLVTPKF
FT                 TVSDETLLYILQLPQLEKEESKVIRILPLTIKNAAINNHPEFLVKTRRELY
FT                 TTTNPDDYVQRRSFIKKFNDACIAPLVLGTHSRCNTTSDTETRTKLLTNNL
FT                 MLITNAKNQQLDSNCGPDNRTVEGNLLISFSNCSIIFNERKISSSEMFTQP
FT                 DVLEGALHNLIIESTQIKDHDIESVHNNTIVNRHLLQQVHLAQYSNKMWNW
FT                 GLLSGISTSTITLTAIIIFIIIKSNCILRGAAKKIAHHRNLRKSSNTRVAD
FT                 DTPIPPGGV"
XX
SQ   Sequence 6852 BP; 2595 A; 1489 C; 1134 G; 1634 T; 0 other;
     attaagtgta ataataaaag tgatttttta aaacgtaacc cgcgtcgcgg ttctcgtaat        60
     tggcgcagcc ggtaggatac ggatcgaagg aaaatagtgc gataacagtg gtagcagcag       120
     gactaaaaac tgcagcataa gtggcttcgt cgaaggacat cggcagcaag caggcggagt       180
     tcccaaaaac aacgctgctg tggagttgaa ggcccccccg tgcttttcca gacatccgtg       240
     catcaacgcc cccctgactg taagtaaacc gcattttttt taccctaatt aagtgcgtcc       300
     ccccgtagtg aaagtgcgag ggtaggagtt aacgcaagtc aactcaaaat cgtgattggt       360
     tcttgaggtt ttcgaacagc aaaaaccctt cacgtcctcc tacagcacta ccagataggc       420
     tgtaagggta gagatccgtg gcactaccag ataggccaca gatttaaaaa tcgttttcaa       480
     aagaaaacgt ctgctagtaa cactaccaga taggttacta gtacagaaat tagcacacta       540
     ccagataggt gctagtttac cgccaaacta aataataaat tactcaagtg tgtttctgtt       600
     atctgacacc ataaacgtgt cggagaagtc atttgaaaag ctttatgccc aaaaacaaac       660
     gcgaaaaatc cgccctcaaa agagcgcgtg aattttttcc gcaaaacttt tcggacactg       720
     aagaatcgga ttcttcagtt gagtcgaatc acgatctagc gcacatccca attaaggata       780
     cgccagaaat aaagaatctg accatcgaat ttaacatgga acagataggt caacaacttg       840
     ccgaaatggc tgctaacctg aataaccttt tagcagagca gcaaaggcag caacagctca       900
     ttaatgctct tggagctcaa caagctggcc aagcagctca ggcacccgtc gcaatacctg       960
     cagcgccgcc gcaacacgct aacttttttg ctatccccga tccaattaaa cacggaatca      1020
     gcaaattcga tggcaacaag aaacaattaa acgcatggct ctcgagtgtt gaaacgacac      1080
     ttcaacagct ccaaccatat tataccgatg accaaaacgc aatgtttttg cggacaataa      1140
     taaatgggaa aattgagggt agagccaaag ataaactttg cgccaatgga aacccaacca      1200
     cattcgaaga agttaaatca attttaatac accaccttgg agatcatcag gatcttacgt      1260
     tttacaaatg ccagttgtgg cagcatgtta aaactccaaa cacaacacta tatagtcact      1320
     ataatagcat caaggaaaca atccaaatta ttaaaaactt atcacaacag gaccccgatt      1380
     atagaacggc ctggaacgta atgaataaat cgatagagca agatgcttta gctgcgttcc      1440
     ttgctggact cccgaaggac atgtttgggc atgctattgc agccaagcca gtcaatatcg      1500
     aagaagccta cgcatttgtt tgcaagttca aaagctccga gaatctcgca aacaatataa      1560
     acaatagatc attcaagaaa aatactgaac aaaacaaaat cataacagaa aataaaccac      1620
     aaaaatttaa gataaacccg catcaacaaa acaatagtca aggtcaacaa aataaaaacg      1680
     acgagccaat ggaaatcggg tcgacgaata gcaggctcac tttgaatcga cgacaattta      1740
     acaataatga aaatttagat gaaaacactt ctgaatccga agaagaaagt gttgatctaa      1800
     atttttgttg ggcgacagga agtcaaacag aaacctaaat tttttgcctt acatcaaagg      1860
     taaaaacaat ttaaagttac taatcgacac aggtgctaat aagaacgtta ttagacctgg      1920
     aatcctagaa aaaagacaag aaaccaaaga gacaacaatc aaaaatctct ctggtaacca      1980
     caaaattagg ctcaagggaa aagagaacct tataggcttt gaccttaagc cacaaacgta      2040
     ttttgaactt catttccaca attttttcga tggaatcatt ggatcagaat ttcttgctaa      2100
     aaacaatgcc gaaattgact acggtaaaaa ctccattaaa ttaggaaaaa ctctaatcaa      2160
     ctttggaaaa tacttcccag ctaaacaaat tttcaatcac actatcacag ttaaaacaac      2220
     agaagatggc gactggtttg tcccaaaaca ccaaaaattt ttgaaacata ctgtcattga      2280
     acctggattg tacaaatcca taaataattt tactacggtg cgacttttat ccttaactaa      2340
     taaaccacca atcattaata acagtttaaa actcaaagta aataactttg aaacaataac      2400
     accaatacca attaaatcag atgacgtgat ctgttccaat cagctctcag aactaatcag      2460
     aacaaatcac ctatccaact tagaaaaaga aacacttttt gaaacacttc ttgcacatca      2520
     aggagtttta ttaaaaactg acgaaaaatt aacagctaca cctattataa agcaccagat      2580
     aaaaactacc gatgaacagc ccgtctatac aaaatcttat cgatatccac aagctttcaa      2640
     aaaagatgtt gaagtgcaaa taaaagaatt actagagaat gatattatat gtcactctac      2700
     cagcccttat tcttctccta tatgggttgt accgaagaaa acagacgcat ctggaaaaaa      2760
     gaaggtacgt gtagtcatag actaccgtaa attaaatgaa aaaacaatta atgacaaatt      2820
     tcccattcca caaatagagg aaattcttga cagtttggga aaatccgtct atttcacaac      2880
     tttagatctt aaatcaggat ttcatcaaat tgagatggat ccagaatcta gatcgaaaac      2940
     agcattttca accgcactag gacattttga atttaatcga atgccgttcg gcttgaaaaa      3000
     tgctccagcc acattccaaa gaggaatgaa caatattttg gctgaattta ttggaactat      3060
     ttgttttgtt tatttggacg atataattat tatcggaaaa aatctgaaag atcacatgga      3120
     aaacctgagt aaggttttag aaagattaga aaagtacaac ttaaaaattc agctagacaa      3180
     gtgtgaattc atgaagagag aaactgagtt cctcggccat gtaatcacac aagacggcat      3240
     aaaaccagat ccaggtaaaa ttgaaaaaat tctggactgg aaattacctg aaacaaaaaa      3300
     agaaattaaa caatttttgg gcctttctgg ctattaccga cggtttataa aagattactc      3360
     aaaaatcaca aaaccgatga ctaaatactt acataaatct gaaaaatcga tcgatcttaa      3420
     agacgtaagt tataaatcag cgtttgaaga actgaaaaaa attattgcct cagaccaagt      3480
     cttggcatac ccagattttg ataagccttt catcttaact actgacgcaa gcaacttcgc      3540
     tttgggagca gttctttccc agatgcaaga aaaggtagaa aaaccaattg catttgcaag      3600
     cagaacactt accaaatgtg aaacaagata cagtacaatc gagaaggaag cactggccat      3660
     aatgtgggct gttcaaaaat tcagacccta catctatggt aatgaatgta cattgtacac      3720
     tgaccataaa cctcttcaat acatcaaaac atgtaacaaa aatcaaaaaa ttttaacttg      3780
     gcgagatgaa ttggagaatt acaaattaaa ctttctctat aaaccaggaa aggctaacgt      3840
     cgtcgccgac gcgcttagca gaaaaataga gacaaaggat gatgaagata actttgaagt      3900
     aaacgctaat gacattcttt caatttcaga gcactcgtca gaggatttag atttatcaac      3960
     acaatcagat gatgacacaa tccactccgc ggaggagtct gctgaagact atgttcactt      4020
     cgtgagtcga cctgttaatt attacaggaa ccaaattgtt tttaaaattg cacacttcac      4080
     ttcagtcatc cacgaatctc ccttcacaca ctatcataga cacaccatca ttcaaccaac      4140
     tttttcgaag aatgacgtga cagatttctt taagaagtat cacaatggaa agcaaacagc      4200
     aatcattgcc cctgaaaata taatacaaat aattcaagac gtatacaaag aaaattttaa      4260
     taacaaagga catttcgttc ttacccaact tatcgtggaa gatgtttgta accacgacag      4320
     acaaaatgta atcatttcta aagaacacga aagagcccat cgtggaatta acgaggtaga      4380
     agcccaaatt aaaagagcat acttctttcc gaagatgaga aatttgatta aaatgcacat      4440
     taattcatgc catatttgta acacccataa atatgaaagg aaaccttaca acataaaaat      4500
     ttccccaaga ccagtgacag aaaaaccatt cacaagagtt cacatggaca ttttcattat      4560
     caataacaat agttttcttt cattagtgga tagtttttcg aaacatctac aaatgtattt      4620
     catcaaacac aaaaatttag tacaagtgca aaaggcacta gccaaatatt tcacatcatt      4680
     tggattccca aacgaaattg tcactgatca cgaaactact tttcgatcta tacaactaaa      4740
     aaattatttg gcacagttag gcgtcgaatt gaaatatgca tcttcttcgg aatcgaatgg      4800
     ccaagtagaa aggacccatc tttccatagc agaaatcttc aacaccaaca aacacaaatt      4860
     tgcaggtatg caaactaaat cgattatcaa attatcagta gctctgtata acgatacaat      4920
     tcactctgca acaaaattca cccctaacga aatcattttt aaccaaaaca acattgttaa      4980
     tcctggcgaa cttatcgaaa aagcgcaaga aatgttttta gaagcaagag taaatttgga      5040
     aaaagctaaa actagacaaa ccaagaacaa cgatcaaaaa gaagatccac ctcaattgga      5100
     ggatgatcaa gaagtttttg ttataccaaa cgttagatca aaaactgccc caagagcagt      5160
     catgacaaaa attaaggagg taaaaaggaa aacgttcaaa aacctcagaa atgttaaaag      5220
     aaataaaagc aaaattaaac gcttgaaaaa atagccctct acgcagtccc taaaaatgca      5280
     cttaccccat aaataaatta actaacctgc actaacacta ctaatattac tttttcagat      5340
     gatacttttc ataattgttt accttttcac aacaagtctt tgtcaagaac tagagatcaa      5400
     acatttggaa aacaaaccga ttctggtgat taagcacaaa aattgtaaaa tccaatctgg      5460
     aaacataaaa atcattcata cagtcaattt aacagactta gaaacaacca ttaatttact      5520
     aacaaatatc gcatacacta acatagatgg taaaaatcaa ctaacacaga tagtaaaata      5580
     taaggttaaa caactctacg ccaacttcta tcaactgaag ccatcgaacc atcgaagaca      5640
     aaaacgatgg gacacagttg gtacgacctg gaaatggatt gcgggaaacc ccgacgcaga      5700
     ggacctccgc atcatcaaca agacacttcg tcaactgatc gaagaaaaca acgatcagta      5760
     ctacgtcaac gaacaacttg gccaacgcat ccagcacctg acaaacaaca tcgcgcaaaa      5820
     ccttgctgac aacaggatca tcaagaacga gatcgacatc ctaaccatca tcgttaacat      5880
     cgacacagtg aacaccctat tgacgaacat ccaagacgcc atcttgctgt caaaagccct      5940
     agttaccagc agcaagatac tgtctccaaa ggaaatccac acgatcaagc aactcatcga      6000
     acaacaagga gtgctcgtcg aaatgccaga cgaagcgttt aacctcgtga cgcccaaatt      6060
     caccgtgagc gacgagacgt tactgtacat cttacagctg ccacaactag aaaaggaaga      6120
     atccaaagtc atacggattc tacctttaac catcaaaaat gctgctatca acaatcaccc      6180
     agagttccta gtgaagaccc gacgagaact atataccaca accaacccgg atgattacgt      6240
     tcaacgtcgt tctttcatca aaaagttcaa cgacgcctgc atcgcgccac ttgtacttgg      6300
     cacacacagc cgctgcaaca caacatcaga cacagaaaca cgcacgaagt tgttaaccaa      6360
     caacttgatg ctgatcacca acgcaaaaaa ccaacaactc gactccaact gtggaccgga      6420
     taaccgaacc gtggaaggca atttgctgat ttcattttcg aattgctcaa tcatcttcaa      6480
     cgagcgaaaa atttcatcaa gcgaaatgtt cacccaaccc gacgtcctgg aaggagcact      6540
     acacaacctc atcatagaat caacacagat caaagaccac gacatagaat ctgttcacaa      6600
     caacacaatc gtgaacagac acctgcttca acaagttcat ctggctcagt acagcaacaa      6660
     gatgtggaac tggggccttc tcagcggaat ttctacatca acaattacgc tgacggcaat      6720
     catcattttc atcatcatca aatcgaactg cattttgaga ggagcagcca aaaagatcgc      6780
     ccaccatcgg aacctgagaa aatcatcaaa cacacgtgtc gcggacgaca ctccaatacc      6840
     ccccggagga gt                                                          6852
//
ID   Gypsy-22_CQ-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   AAWU01028702;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_CQ_;
KW   Gypsy-22_CQ-I; Gypsy-22_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 424-424 (2011).
XX
DR   Genome; AAWU01028702; Positions    8192    7996.
XX
SQ   Sequence 197 BP; 41 A; 61 C; 50 G; 45 T; 0 other;
     tgcatcccta cctgtcgtca ccacgctgga tcatcatgca ccgtcagcag gatacggtgc        60
     cacgtagtgc cacgcggcat agcaacgccg ggttatgctg actcggcagg actgttcaac       120
     aaaactgtcc gcgcaggtat gcgcggcctc tttcattccc ggatcgccgt gaagttaacg       180
     tcgtagttca tcattca                                                      197
//
ID   Gypsy-22_DAn-I repbase;    DNA;    INV; 4403 BP.
XX
AC   AAPP01019443;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DAn_;
KW   Gypsy-22_DAn-LTR; Gypsy-22_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4403
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019443; Positions   50782   46380.
XX
CC   'TATT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..3646
FT                 /product="Gypsy-22_DAn-I_1p"
FT                 /translation="MQTPIRCHNCGKLGHKAMECRKRRTEERNETRHGESN
FT                 NRTTIVRERSTITCFKCGGVGHIASVCTRGTATASRSSNERRVDMCALHQP
FT                 NGTAIQFGEKFPFFFDSGSECSLVKETVGAKLAGKRIHNMVVLRGIGDNVV
FT                 KSNMQILSTIQISEFNFELSFHVVDNNMIIGQDIFELGFGVTLERDRFDIY
FT                 KTQTVLSLNNDKNVNEIDHKSNVNLELSNSDKLKLNDILAKYSKFLIDGIP
FT                 NRRVTTGSLEIRLVDVNKTVQRRPYRLSESEKEIVREKIQQMLESNVIRPS
FT                 SSPFASPMLLVKKKDGSDRLCIDYRELNANTVSDRYPLPLISDQIDRLQGG
FT                 KYFSSLDMASDFYQVPIHADSVERTAFVTPEGQYEFLAMPFGLKNASSVFQ
FT                 RAIVRALGDLVNKYAVVYIDDVLIVSSTIEEAFDRLETVLSVLSKSGFSFN
FT                 IKKCKFLQTEIEYLGFLIRDGELKPNPRKIQALTQLPKPESVTQTRQFIGL
FT                 ASYFRKFVPHFSEVMKPLYLLTSKINEFEWSEKHEEIRKKIIKVLTSDPVL
FT                 IIFDPNLPIELHTDASANGYGAMLLHMVDGQRRVVEYYSKCTTISESKYHS
FT                 YELETLAVYNAIRNFRHYLSGRKFTVYTDCNSVSASQKKAALTPRVHRWWS
FT                 FLQSYEFQVEYKKGSQMAHVDCLSRNPVTIVEQESLSKVVEVRVDLATITH
FT                 NWLISEQKRDQDISQIMTELNSDEMQKETANSYEIRNSLLHRKIQRNGKTR
FT                 CLPVVPRAFRWSVVNHVHEAVMHLGWQKTLDKIYEQYWFDGMSKYVRRFVE
FT                 NCVTCKLSKSVSGKIQSELHPIPKVEIPWHTVHIDISGKLSGKKDEKEYVI
FT                 VQIDAFTKFVYLYHTWNLDTVNCIQSVKSAISVFGVPNRIIADQGRCFTSS
FT                 EFRKFCSNNKIDLHVVATGASRANGQVERVMSVLKGMLTAVETSERTWQEA
FT                 LGEVQLAINCTMNRVTNHSPLELMIGKEARPLGMLTVNEEERVDLNKARKL
FT                 RKA"
XX
SQ   Sequence 4403 BP; 1472 A; 802 C; 1033 G; 1096 T; 0 other;
     tcagaagtgg gatcaccgcc cctacaagat aactcggaag atagctggcg cagactatta        60
     gaatcgcaaa atagagtgat aaccgaacta ttaaaagcaa cgccgcaacc tgacacgcgc       120
     gccgcatccg cgatgttacc gatattcaac cccgaagctg cagaagccgt cgcggcagca       180
     tggtgcaaaa cggcggatat gattttaagt gaacatccac aagaaggtgc atccttggtg       240
     atgacgctca gcaaatcgct actcggtagt gcatcgcagt ggctttcgca aatttgtttt       300
     cccggaatga gctggtcgca ccggcagcag tgttgctcaa catgctcaag ggacgtccta       360
     atgcaaatga atgcctctcg gtgtattcaa gccgactaat tacatcgtta ttgaccaagt       420
     ggaaatcaat gacccatgag gagatcgcta tatccctagt cttggcccat gcttcccaaa       480
     tcgacccaga ctgcagcgtg tagcgttcac cacaaacata aaaacacgtg ctgaactgca       540
     acaacaactc aaggcgcaca cgttcagcag aaatttagaa ttttctgcat cagagggacc       600
     cgagaggaag agattcaaaa tgcagacgcc gattagatgc cataattgcg gaaaacttgg       660
     acataaggca atggagtgtc gcaagaggag aacagaagaa cgaaacgaga ctagacacgg       720
     cgaaagcaac aacagaacaa cgatagtacg agagagatca acaattactt gcttcaagtg       780
     cggcggcgtt ggacatatcg cttcagtgtg tacgagagga acagcaacag cgagccgaag       840
     cagcaacgaa aggagagtag acatgtgcgc attacatcag ccaaatggga ctgcaattca       900
     atttggtgag aagtttccat ttttctttga ttctggatca gaatgctctt tggttaaaga       960
     aacagttggc gccaagctgg ctggaaagag aatccataac atggttgttt tgagaggcat      1020
     aggcgacaat gttgtcaaga gcaatatgca gattctgtcc accatacaaa tttctgaatt      1080
     taattttgaa ttgtcatttc atgtagtaga taataatatg ataattggac aagacatttt      1140
     tgagcttggt tttggagtaa ctttagaaag agatagattc gatatctaca aaactcaaac      1200
     cgtattgtct ttaaataatg ataaaaatgt aaacgagata gatcataaaa gtaatgttaa      1260
     tttggagcta agtaatagtg ataagttaaa attaaacgac atactggcca aatattccaa      1320
     atttctcatt gatggcattc caaatagacg cgttacgaca ggttctttag aaatccgttt      1380
     agtggacgta aacaaaacag tacagagacg accatatcgt cttagcgaga gtgagaaaga      1440
     aatagtaaga gaaaagattc agcaaatgct agaatccaat gtaattagac caagtagctc      1500
     ccctttcgct agtccaatgt tacttgtaaa aaagaaggac ggcagtgaca gactgtgcat      1560
     agattatcga gaactcaacg caaatactgt gtcagataga taccccttgc cattaatatc      1620
     agaccaaata gatcgcctgc aaggcggtaa atatttctct agcctagaca tggccagtga      1680
     cttctatcag gtgccaattc acgccgattc ggttgagcga actgcattcg tgacaccaga      1740
     gggtcaatat gaatttttag ctatgccctt tggcctcaaa aacgcttcgt cagtctttca      1800
     acgtgccata gttcgagctt taggggattt ggttaataaa tatgcagtag tctatatcga      1860
     tgacgtatta attgtttcta gtactataga ggaagcattt gacagattgg aaacagttct      1920
     aagcgtatta tcaaagtcag gcttttcctt taacattaaa aaatgcaaat ttctgcaaac      1980
     ggagatagag tacttaggtt ttcttataag agatggcgag ctaaaaccca atcctcgaaa      2040
     aatacaagca ctaacccaac ttcccaaacc agaatcagtc acacaaacta gacagttcat      2100
     aggtttagca tcttacttta ggaaatttgt cccacatttc tcagaagtaa tgaagcctct      2160
     ttatctgcta acatcaaaaa taaacgaatt tgagtggagc gaaaagcatg aggaaattcg      2220
     aaaaaaaatt attaaggtgc taaccagtga tcccgttttg atcatattcg atccaaattt      2280
     accaatagag ctgcatacgg atgctagcgc caatgggtat ggcgctatgc tattgcacat      2340
     ggtagatggt cagcgccgtg tagttgagta ttacagtaaa tgcaccacaa tatccgagtc      2400
     aaaatatcat tcgtatgaac tcgagacatt ggcggtgtac aatgcgatta gaaatttccg      2460
     acattattta agcggcagaa agttcacagt atatacggac tgtaattctg ttagtgcaag      2520
     tcaaaagaaa gcggcattga cgccgcgagt tcatcgttgg tggtcatttc tgcagtcata      2580
     cgaattccag gtggaatata aaaaagggag ccaaatggct cacgttgact gcttgtctag      2640
     gaatcccgtc accatagtag agcaggaaag tttgagtaag gtagtggagg tacgagttga      2700
     cttggcaact ataacccaca actggcttat atccgaacag aagcgtgatc aagacatatc      2760
     gcaaatcatg accgagctaa atagtgatga aatgcagaaa gaaacagcta actcttatga      2820
     aatcaggaat agcttgctgc atcgtaaaat tcaaagaaat gggaagacac gatgcttgcc      2880
     agtcgtaccc agggcattca ggtggtcggt ggttaatcat gttcacgaag ctgtaatgca      2940
     cttggggtgg caaaaaaccc tagataagat ttacgagcaa tattggtttg acggaatgtc      3000
     aaaatacgtg cgaagatttg tagaaaattg tgtgacatgt aaattgtcaa aatcggtgtc      3060
     aggtaaaata caatcagagt tacatcccat tcccaaagta gagataccat ggcatacagt      3120
     gcatattgat attagtggga aattaagcgg aaaaaaggac gagaaggaat acgtaatagt      3180
     tcaaattgat gccttcacca aatttgttta cctgtaccac acgtggaact tggacacggt      3240
     gaactgcata cagtcagtaa agtctgcgat atcagtattt ggtgttccta acagaattat      3300
     agcggaccaa ggtagatgct tcacgagtag cgaatttcga aaattctgtt ccaataacaa      3360
     aattgacctt catgtagtag caacgggtgc cagtagggca aatggccagg tggagcgcgt      3420
     tatgagtgtg ctaaagggca tgctaacggc tgtagagaca agtgagcgaa catggcaaga      3480
     agcattgggc gaagtacaat tggcaataaa ctgtaccatg aaccgggtaa ctaaccatag      3540
     tccattagag ctgatgattg gcaaagaagc gagacccttg ggaatgctca ctgtaaatga      3600
     ggaagagcgt gtagatctga ataaggctag gaagctaagg aaggcataag taagaatgct      3660
     cagtatgata aggcaagagt aaataaaaag catgctcagg tagtaaggca taaaattggc      3720
     gatcatgtat tgctgaaaag cgaagagcgg caccaaacga agttggatcc aaagtttatg      3780
     ggaccattcg aaattgtaca attgctagat ggtgaccgat atttgttaaa atcattgaca      3840
     actagaaggg tgtataaata cccgcatgat agtgtgcgta gtgtgcctaa agatcgagag      3900
     accttggaat ttgaagaaga gcttgacgac ggcaaaaagt agtgcgtgca agcaagagat      3960
     ctgtgaccca agaggggtgc gagggagaaa ttttatgcag aagagagcgt agtactctga      4020
     tttgtatgag agaagcctgc taaaattatg atttgatgat aagtgaattg gtaaccagat      4080
     gattgagctt gagcggaaga gagcgtgtac tctaagatat gtgaaagaaa agaaagttat      4140
     cctgctaagc taatctctga tggatatcca agtggttggg tttgtacgga agaaagcttg      4200
     tactctagag aatttgagaa gtgttatccc gtcaaactaa cgcttgaagg cacaagaagt      4260
     gcaattgatt ttgttttgaa gtataagtaa gctttgtaat catagggata agctaagtaa      4320
     tataaaatat tgacagtgat gtgttctgat aaatcttgta ctatgcaaag caacacgagg      4380
     acgtgttata gtcaggaagg ccg                                              4403
//
ID   Gypsy-22_DAn-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   AAPP01019443;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DAn_;
KW   Gypsy-22_DAn-LTR; Gypsy-22_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-308
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019443; Positions   46379   46072.
XX
SQ   Sequence 308 BP; 125 A; 37 C; 82 G; 64 T; 0 other;
     tgtcggagat aagatagatt taattcaaat aatatttact gattaattat aagataagtg        60
     tatggtccaa aaggaaataa atgagcattg aaaatgaaga gagagaagct tattaggata       120
     agagcgcggt agggaaagag agtaaagccc tgctgagcgt ggcgcaatga tggaaggaag       180
     gaagtggaaa gggaaggtaa ttgaaaacag ccatcggaag tgaacggtca taaggaagaa       240
     tatcattgcg actcgctgcg tgtaaaaaat agaaaatgac tgagaaaaac gaccaacatt       300
     tcccgaca                                                                308
//
ID   Gypsy-22_DAzt-I repbase;    DNA;    INV; 7369 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7369
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 802-802 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           992..2233
FT                 /product="Gypsy-22_DAzt-I_1p"
FT                 /note="RING zinc finger."
FT                 /translation="MGLQWISYRRKDELQHIAAEFGLNETGTVDELRSQIT
FT                 SFIKHGEHSTVVRKRIEELGTLYASAPSPRSQRAISPAPGSSRREQKEGIQ
FT                 VEQPLSIDIPELPRESSAERWIHDGSHQNRLAEGARTSRTGREEIPYAILA
FT                 DKLRHWGLEFDGHSDALAFIERLEERVESYGGSPEQLPRAMSGLLTHKAEG
FT                 WFRAFQMQGKPWAEFRKEFLEFFLPPRYFQRLEDTIRSRYQRPGESFQDYL
FT                 IDLRLMMQRAQYTPERELDRIYENLRPEYQLFTRRHEFKTLRELTQLIVAY
FT                 EVTRDRGQTYPLDNSTNARPRMLPHHLTSAEEVTPSRNAELANRATTQDGD
FT                 RPVDVRRACRNCGEEGHFHSSCRNRRVLFCWECGRRGTRTIDCCRQTAPGN
FT                 GLSLRPVGTRAETYTQGPQE"
FT   CDS           2089..6048
FT                 /product="Gypsy-22_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="ESASAVLLGVRSPRHTNDRLLPSNSAGKRTQSPPSRD
FT                 PSGDLHPGPPGVTHPLRLESGRIAALVTIGALPLTATLDTGATRSFVSHRM
FT                 VKEMETIGSPQNVRTQVRLADGTTKEVTQAVRVKVRLDQRETYVTLLVLPM
FT                 VVDDVILGLDFLCGIQAVIVCGRAYLQLAREVDALSAFSPPLPRTAMAEGH
FT                 GHSSGTTAPSPVHTRASASSAKAPAEAYRITKTFAETTATPLDTPRASTSS
FT                 AKAPAEADRITKTFAETTATPLDTPRASTSSAKAPAEADRITKTFAETTAT
FT                 PLDTPRASTSSAKPLADEHRSARTLAETTATPLAITRAVQATVTTSRSNAT
FT                 GSTSPGIAPASLSNTTRTLPSGFHHVESSVSTRIAPTDYRLAPLADAATAR
FT                 QRNPFRKAERTTTPMVNLAIVASAPSEELSPQTSLEPDPALAPWVAAFLER
FT                 ELAKFEGLSGISHITQHTITMKDDKPLKQRYFPKNPAMQKIINAQVDELLR
FT                 DGRIEASKSPHSAPIVLVGKKTGDMRMCVDYRQLNARSVPDAYPLPRINHI
FT                 LERLRHAHYISTLDLKNGYWQIPLAEGSRECTAFTVPGRGLFHWKVMPFGL
FT                 HSASATFQRALDSVIGPQMEPHAFAYLDDIIVVGAKLEDHVENLREVFRRL
FT                 REANLKLNQSKCRFFQKSIAYLGHVISEQGIHTDPDKIVAVQKLAPPSSAK
FT                 ELRRCLGMASWYRRFVPNFATIVQPISSLLRKDQKWVWGVEQQAAFEELKE
FT                 KLTQAPVLACPDFSEKFTLQTDASDYGLGAVLTQEMAGEERVIAYASRRLL
FT                 KAEENYSATEKECLAIVWAIRKLRCYLEGYQFDVVTDHLALKWLNSINNPT
FT                 GRIARWALELQQYRFDVIYRRGSQNVVADALSRQPIEALRQAREDPPTCPW
FT                 LTRLLKRIRSQPEKCGDFTIENGQIYRRTGSRPAEEESHEWKLCVASEHRR
FT                 RVLQECHDHPTAGHQGIRKTTTRITQRYYWPGLYRDVVRYVQRCESCQKFK
FT                 VSQTKPAGQMCTRQAKGPFDILCADFVGPLPRSRHGNTMLLVFFDLFCKWV
FT                 ELVPLRKATTAHLEKAFRERILCRFGVPRKFVCDNGTQFTSRSFRKFCMLA
FT                 GMELEHTAPYTPQQNPTERANRTVKTMIAQFIDADQRTWDDLLPELSLAVN
FT                 SSPSDTTGFSPAFLVLGREPRLPGALYDEMTPGLAGELEPAQDKATRLQDI
FT                 YKVVRENTQRASQTQKRTYDLRRREWXPELGTLVLLRQHQLSKAADGFAAK
FT                 LAPKYDGPYKVVKFLSPNIVRLQSNHSRQRKTASLADLKAFHGADDDVDEL
FT                 QPTSQTPE"
FT   CDS           6292..7368
FT                 /product="Gypsy-22_DAzt-I_3p"
FT                 /translation="MKRQSNGSWVQANHQGYEGPSTSSRVDLRRTHQLATT
FT                 RHDQLPLEQRLQAVQGWLDRQHLAALTGASPEEVAPGGPNPVAEVPRFWRC
FT                 DTAVDGDNITTDADDEETVPRSTGTLASSLDDETNGPLVDPTDGDAREAGQ
FT                 QEDWAAGLWADWALVSPRPVKDEQRDAADEEANGARPHYSDISEDEQREES
FT                 PSPRPVESETDQWSLRTPSFSPQANPVEMAVDPRPPSRTSPPPAAPTGRYV
FT                 PQPWYDIEALDSLGSEHSLPLNLEEAADLLQLFRLHPGIAVVQDEAGWAVA
FT                 PVEWRTNTFNNQLPLDLIANITVYLRDPSSRLGIRRLEIHDGRCFRIKISR
FT                 RRLVTVTQRTPRSMEG"
XX
SQ   Sequence 7369 BP; 1847 A; 2159 C; 2160 G; 1200 T; 3 other;
     gatggcgccc gagcagggac tccgaggttc cgtaaggttc tgaacggcca agggatttta        60
     gctagaaggc ttttgcgagg gaattgtgtg ggcaaagcgg catcgactcg gaattttcga       120
     gtggccccat ggtgtccaaa ggcaggaaag taaagcagga aggcagcggc gggagcagag       180
     aagcagaacc acgggagagc agaagttaga ggaaggaaga gtagagaggg gcaacggttt       240
     tgtaccagca aacggttatt ggcctcgcac accgcccgga cggtcgccta ttgctctcgt       300
     acagccgagg ctggcttccc taacttcctt aactgtagcg tctgcccgcg gccaccaccc       360
     tcaccgggag gcgctgaaca gagaagcgcc gcccaggagc agagccactc cgcccagcag       420
     cagagggaga ggggccgtgg agtcggagct gacgccggct gatcggcggt ggcgcgacgg       480
     cagcggktcg gcagcggcag agcgagcggc agagcaggcc aggccccata tattgaggac       540
     cccgagccga gaggaggaca gttggtgcgt ggcttcagat cgtgacggtt gaaccggacc       600
     tcgaaaaaaa atcgcgacca agtgaagcag gataatcagg atcaacaacc aggataccta       660
     acgaccagga tcatcaggat tacacaacca ggatacttac caaccgggat catcaggatt       720
     aaacaaccag gatacctacc ggctaggatc atcaggatca acaaccagga taccccctta       780
     ccaggatagt cagagtcatc cccccaggat acacgccagc caggacagcc aggatcacca       840
     gtcagaacgc tcctcaacca aggacgacga caaggaccct ccctaagcaa ggattaacag       900
     caagggccgt ctcaagggcc aaggacacct gaacctaccg atcagcagac cagggaccaa       960
     caacggtgag gttcctcaag cagctatcgg catgggttta cagtggatct cgtatcgccg      1020
     caaggacgaa ctgcagcata tcgctgcaga gttcggcctc aacgagacag ggaccgtgga      1080
     cgagttgcgc agccaaataa cgtcattcat caagcatgga gagcactcga cagttgtcag      1140
     aaagcggatc gaagaattag gcacactcta tgctagtgcg cccagcccca gaagccagag      1200
     ggcgatatcc ccggcaccag gatcgagccg acgagagcag aaggagggca tccaggtgga      1260
     acaaccgctg tcgatagaca tcccagagct cccccgagaa tcctcggctg aacgatggat      1320
     ccacgacggc agtcaccaga accgcttggc cgaaggagcc cgaacttcgc ggaccggtag      1380
     ggaagagatc ccttatgcca tattggccga caaactgcgt cactggggcc tggagttcga      1440
     tgggcattcg gatgccctag cgttcattga acggctggaa gagcgagtgg aatcatatgg      1500
     ggggagccca gaacaacttc ctcgagccat gtcaggtttg ctaacccaca aggcggaagg      1560
     atggtttcga gccttccaga tgcagggaaa gccttgggcc gaattccgaa aggagttctt      1620
     ggagttcttc ctgccccctc gctatttcca gcgcctggag gataccatcc gcagccgata      1680
     tcagcgaccc ggggagtcgt ttcaggatta cctgatcgat ctccggctca tgatgcaacg      1740
     agcccaatat acgccagaac gagaattgga caggatatac gaaaatctca ggcccgagta      1800
     ccaactattc acccggaggc atgagtttaa gacgctgagg gagttaaccc agttgatagt      1860
     ggcatacgag gtgactcgag atcgcggcca gacctaccca ttggacaatt ccacgaacgc      1920
     caggccaagg atgctaccac accacctaac ctcggcagaa gaagtgacac cttcccgaaa      1980
     cgccgagcta gccaaccgtg cgacaaccca ggacggagac cgacccgtag atgtgcgtcg      2040
     tgcctgccgg aactgcggag aggagggtca cttccacagc tcctgtagga atcggcgagt      2100
     gctgttctgt tgggagtgcg gtcgccgcgg cacacgaacg atcgactgct gccgtcaaac      2160
     agcgccggga aacggactca gtctccgccc agtagggacc cgagcggaga cttacaccca      2220
     gggcccccag gagtaacgca tcctctaaga ttggagagtg gcaggatcgc tgcgctagtc      2280
     accatcgggg cattaccgtt gacagcgacc ctggataccg gagcgacccg gtcgtttgtc      2340
     agccatcgaa tggtgaagga gatggaaacc ataggtagcc cgcagaacgt gaggacacag      2400
     gtccgcctgg ccgatggaac cacaaaggag gtgacgcagg cggtgagagt caaggtgcgg      2460
     ctggaccagc gggaaacgta cgtgaccttg ttggtactac ccatggtggt tgacgacgtc      2520
     atactggggc tagattttct atgcgggatt caggcagtaa tcgtgtgcgg gcgtgcatac      2580
     ttgcaactgg cccgagaagt cgacgccctc tccgcattct cgccgcctct gccgcgcaca      2640
     gcgatggccg aaggacacgg ccactcgagt gggacgaccg cacccagccc ggtccacact      2700
     agggccagtg catcgtctgc caaggcgcca gctgaagcat ataggatcac caaaactttc      2760
     gcggagacga ctgcgacacc gctggacaca cccagggcca gtacgtcatc tgccaaggcg      2820
     ccagctgaag cagacaggat caccaaaact ttcgcggaga cgactgcgac accgctggac      2880
     acacccaggg ccagtacgtc atctgccaag gcgccagctg aagcagacag gatcaccaaa      2940
     actttcgcgg agacgactgc gacaccgctg gacacaccca gggccagtac gtcgtccgcc      3000
     aaaccgttag ctgatgagca caggagcgcc aggacgctcg cggagacgac tgcgaccccg      3060
     ctagctatca ccagggcagt ccaggccact gtgacgacgt cccgaagcaa cgccaccggg      3120
     tcaacgagtc caggcatcgc ccccgccagt ctcagcaaca ccactaggac gctgccatca      3180
     ggctttcatc atgtggagtc ctccgtcagt accaggatag cacccaccga ttaccggctg      3240
     gcgccattag ccgacgccgc caccgcacgc caacgcaacc cttttcgaaa ggcggagcgg      3300
     actacgaccc ccatggtaaa cctggccatc gtagcgtcgg ccccgtccga agaactctcg      3360
     ccccagacgt ccttagagcc cgaccccgcg ctcgcgccat gggtagcagc gtttttggaa      3420
     cgagagttgg ccaagttcga agggctgagt gggatctcgc acataaccca acacacaata      3480
     acgatgaaag acgacaagcc actgaagcag aggtatttcc ccaagaaccc ggccatgcag      3540
     aagatcatca acgcacaggt cgacgagctt ttgagggacg gacgtatcga agcctccaag      3600
     agtccacata gcgccccgat cgtactggtg ggcaagaaaa cgggagacat gcgcatgtgc      3660
     gtggactacc ggcaactcaa tgcacggtcg gtgcctgacg catacccgct tccccggatc      3720
     aaccacatcc tcgaaaggct ccgccacgcg cactacatct cgactctgga cctcaagaac      3780
     gggtactggc agattcccct ggcggaagga agcagagagt gcaccgcgtt cacggttccg      3840
     ggcagaggcc tcttccattg gaaggtgatg ccgtttggcc tacattccgc atcagcgacg      3900
     ttccagaggg cactggatag cgtcatcgga ccccaaatgg agccccacgc tttcgcgtat      3960
     ctggacgaca tcatcgtcgt aggagcaaag ctggaggacc acgtcgaaaa cctccgggaa      4020
     gtgttccgaa ggctgaggga ggcaaatttg aagctgaacc agagcaagtg caggttcttc      4080
     cagaagagca tagcttatct gggacatgtt atcagcgagc aaggcatcca tacagacccg      4140
     gataaaatcg tggcggttca gaagctagcg cctccaagct cagccaagga actacgacgg      4200
     tgcctaggga tggcgtcttg gtaccgtagg ttcgtaccca acttcgcaac catcgtccag      4260
     cccatttcga gcctcctcag gaaggaccag aagtgggtct ggggcgtgga acagcaagca      4320
     gcgttcgagg agctaaagga gaagctgacg caagcacccg tcctagcttg cccagacttc      4380
     tctgagaagt tcacattaca aacggatgca agcgattacg ggcttggagc ggttttaacg      4440
     caggagatgg ccggagagga gagggtgata gcgtacgcca gtcgacgact cctcaaagca      4500
     gaggagaatt actcggccac agaaaaggag tgtttagcca tagtgtgggc cataaggaaa      4560
     ctacggtgtt acttggaggg ctaccagttc gacgtcgtca ccgatcatct cgccctgaag      4620
     tggttgaatt caatcaataa ccccacgggg cgcatcgcgc gatgggcttt agagcttcaa      4680
     cagtaccgct tcgacgtcat ttataggaga gggagccaaa acgtcgtagc agatgccctt      4740
     tcccggcagc ccatcgaagc cctacgacaa gcccgggagg atccacccac ctgcccatgg      4800
     ttgacgaggt tgctcaaacg gatccgatcc cagcccgaga agtgcggcga cttcaccatc      4860
     gaaaacggcc agatttacag aaggacaggg agccgacccg ccgaagaaga atcccacgag      4920
     tggaagttgt gcgttgccag tgaacatcga cgccgagtac tccaagagtg ccatgaccac      4980
     ccgaccgccg gtcaccaggg aatacggaag accacgaccc gtataacgca acgatactac      5040
     tggccggggc tctaccggga cgtagtgcgg tacgtgcaga gatgtgagag ctgtcagaag      5100
     ttcaaggtga gccaaactaa accagcaggg caaatgtgca cccgtcaggc caagggccct      5160
     ttcgacatcc tttgcgccga tttcgttggc cccctgccgc gctctaggca tggcaacacg      5220
     atgttgctag tgtttttcga cttattctgc aagtgggtgg agttggtgcc actgcgaaaa      5280
     gccactacag cccatttgga aaaggcgttc cgagagagga ttctctgtag attcggagtc      5340
     ccgcggaaat ttgtgtgcga taacggcacg caattcacga gccggtcctt ccggaagttc      5400
     tgcatgctgg ccggcatgga actggaacac acggccccat atacgcctca gcagaaccca      5460
     acagagcggg ccaatcgaac ggtcaaaacg atgatagcac agttcatcga cgcggaccaa      5520
     cggacctggg atgacctgct cccggaactg agcttggccg tgaacagcag cccctccgat      5580
     accaccggat tcagcccagc gttcctggta ctcggccggg agccaagact cccgggcgcg      5640
     ttgtatgacg agatgacccc ggggctggca ggagaacttg agcccgcgca agacaaggcc      5700
     accmgactgc aggatatcta taaggtggtg cgggaaaaca cccagagggc gtcccagacc      5760
     cagaagagga catacgacct acgcagacgg gaatggmgtc ccgaactagg aacgctggtc      5820
     ctgcttcgac agcatcagct atccaaagca gccgatggct tcgccgcgaa actggcccct      5880
     aaatacgacg ggccttacaa ggtggtcaaa ttcctgagcc ccaacattgt caggttgcag      5940
     agtaaccata gtcggcaaag gaagaccgcg agcttggcgg acctgaaggc cttccacgga      6000
     gctgacgacg acgtggacga gctgcagccg acgtcgcaga cgccggaatg agccaagcac      6060
     tcacaagggc cacttgtagc agcgcgctgc tacaacgtcc ttgccccctg gaaaggaggc      6120
     aaaactccag tagcgtaagc caaccataag gtccccctta ggggaatagt taagcacaaa      6180
     ctgtatgcat ttccacacgc accgctcagg caagatagag ggaagggtag gatttcgtcg      6240
     caaggcaggc aggcactaac caactgtagt ttcctcccta gaatcgacga gatgaagcga      6300
     cagagcaatg gaagctgggt gcaagcaaac caccaaggct acgaaggtcc ctctacgtcg      6360
     agcagagtag atctgcgtcg cacccaccag ctggccacca cccggcacga ccagctccca      6420
     ctggagcaac ggctacaagc tgtccagggg tggctcgatc ggcagcacct ggctgctctc      6480
     acgggagcct caccggagga agtagctcca ggcggaccca acccggtagc tgaagtccca      6540
     cggttctggc gctgtgacac cgcggtggat ggggataaca tcaccacgga cgcggatgac      6600
     gaagagaccg taccgcgcag tacggggacc ctggcatcct cgctggacga cgagacaaac      6660
     ggacccttgg tggatccaac ggatggtgat gctagagaag ccggtcaaca ggaggattgg      6720
     gctgccggtc tctgggccga ctgggccttg gtgagtccac gccctgtcaa ggatgagcaa      6780
     agggacgcgg ccgacgagga agctaatggg gccaggcctc attattccga catatcggag      6840
     gacgagcaga gagaggagag cccgtctccc cggcctgtgg aatccgagac ggaccaatgg      6900
     tcactaagga ccccgagttt ttcccctcaa gcgaatcccg tggagatggc cgttgacccg      6960
     cgcccaccca gccgtacgtc accaccaccg gccgcaccga caggtcgcta tgtcccacaa      7020
     ccctggtacg acatcgaggc tttggattcg ctcggctcgg aacacagcct tccgctgaac      7080
     ctcgaggagg cagccgacct actgcagctc ttccggttgc acccggggat agccgtagtg      7140
     caggatgagg caggctgggc cgtggccccg gtagaatgga ggacaaacac tttcaataac      7200
     caactgccac tggacctgat cgccaacatc actgtgtatc tacgggaccc ctcgtcccgg      7260
     ttgggcatac ggcggctaga gatccacgac ggacgatgct tccgcatcaa aatctcgcga      7320
     cgccggctgg tcaccgtcac tcagcggacc ccccgaagta tggaggggg                  7369
//
ID   Gypsy-22_DAzt-LTR repbase;    DNA;    INV; 1704 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1704
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 826-826 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1704 BP; 378 A; 503 C; 495 G; 328 T; 0 other;
     tgtgaaggag catacgctcc cctcacatac ttattagaca tatggaattg ccatggaggc        60
     aggtttatgg attattttta gttaggccaa ccgacggaat tatgaattta ggttaagcga       120
     cagtgaagtc gttaacgcca agagggccaa gaacactcga aagttgcacc aggaaggtca       180
     aggtcaaggt tgagacaacc acaatcacga gcacgatcag gagagtccat ccctagcgcg       240
     cgcacgtcaa cgaccgggag agcgccaacg accgagagag acaaccgccc acgcacgcca       300
     acgacccgga gagcgccgcc gcccaggaga gcacggccgc ccgcactcgc gtcaacgacc       360
     gggagagcgc ggccgcccgc gctcgggccg acgatcggga gagcgcagcc gcgcacgcgg       420
     accaacgacg aggagagccc agcagcccaa ccacacgacc aacgcccgcc agcggtggcc       480
     aaagagaaaa accgttatcc cgatgagcga gtgtccgaac accggcctgg agagagagga       540
     gtgtcggcgg cagaggagga gcagcgcgag ccctgaccgt cggaccgggc gccaaagaaa       600
     agaggaaaaa gaaagggaga gggagtctgg agcagccgcc aacgaaagcg gtcacgcata       660
     cgcgaacgcg gaattcaacg agaaattcaa agtggaaaaa aaaggaaaga acacggaagc       720
     tgaccaggcc tacagataga aattttacga ggaatcgggg taagcaagcc ccggtggggg       780
     gcaagtaggt ttactgagcg gtgcggtagg cagggccaat tgaggtagcc attggaaaaa       840
     aggagaaaaa aatgaataaa aaccacatac atgaaaccac cccaacgtcg attcatgtct       900
     gtcttggggc ccaaggggcg ggggtatacc tcgccgatct ggtttggttt gttcacctat       960
     ttcttcccag cttgctgtgt tccctagtgt tgcatgcgtc cagaagtgtt ccctcccttc      1020
     ctcttgtccg tctacctttc cctgtagtat ctggtccagc gtgcgcttgc ggtactgtcc      1080
     ggcgaatgcc tcggccccgt tggcggcgct gctggaccta ccagtaccca gaatgcctgc      1140
     tggacgagtg tcccggcttc ttggaggcgc tgactggcgt ctaagtacca ttcccccccc      1200
     cttttcccct tgtgtgtcta gtcgtccccg cagtgtacgg tccagcatgt gtccccggta      1260
     ccgaccggtg attgcctcgg cttgactggt ggcgctgctg gaccctgtag tgtatgtctc      1320
     gtagtgcgcg tccagggtac cgactggtga ttgcctcggc ttccttggcg gcgtgtctat      1380
     ttcttcttcc ctcccttttg cccctcggcg gtctactcgg cgtcgcagag tgtgttcccg      1440
     caagtgtccg aggtaccgtc cggtgatcgc cacggccccc tcggccacct tgtgtggtgt      1500
     caccctcgaa gtcgccagcc gcgcaacttc atcatgtcgc cgcggccacg tccccgagtg      1560
     gcttccgcct ctccatattc gcgtcttgtg aaccacaccc ctttggccgt cccgaacttg      1620
     gagtcccggc aaactataaa tggttctgtg gtttcgactc tggcgggact gagagttata      1680
     ccccggcccg aacgcttcct taca                                             1704
//
ID   Gypsy-22_DBp-I repbase;    DNA;    INV; 4715 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4715
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 690-690 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. The consensus is ~94% identical to
CC   that of Gypsy-24_DAn-I.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4589
FT                 /product="Gypsy-22_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MDVSNASIAQLKRWLSALRLPTTGTKRELILRLDKMS
FT                 KETRNYLESIRNQDEDGDGNNDEDEYEEDLELESQEDDNDNGDEDGGNNND
FT                 KAGVQENEKVRGEGNDKHGGGTKGKDGDKNKSKVGGDRSGKDGDRRNSKDG
FT                 GESSGKDGGENNNSDGGRNNDHDGGENNNSDGGEGEDKDGDHARNDRNEAG
FT                 SSGAKEGATEEVKKGNVAKSELLEFHNPSIDISLGMATQVVSDFSGETCAR
FT                 KWITQMKNIATIYGVSGKYIKMLMISKIKGKANVWLHANPERIMLPLEELT
FT                 AELISMFSDKVSKLEARRQFENRKWSSGESFGSYVDDKVMLGQRIDIDAEE
FT                 MISRIIEGIPNQGLRNQAHIQCFENVAHIKRAFAEVKLPKSYGDKKEAAAN
FT                 KDEKDSKDTRCYNCNAKGHWAKECRKPRREKGSCYACGEMGHFVAKCLKNK
FT                 VKSEVKNNYVRYFEIYFKNNTNTRLITECLIDTGSPISFIKISKVPENVCK
FT                 MPVLSSYHGINESYLETYGRILCYIKKKFNKVHFHLVVVANKSMSHDVVLG
FT                 RDFMEARDLNLNLDTLKMVTVENLENVKDSYDVSDEEQIVSDVDVKQKIRN
FT                 AVRLQEATKFDINVVEKELMNINIEDESVEYKIGEQVEYKVRQQFIKIIEN
FT                 FYVNKQRPREPEVKCEIKLRLDDSKPFSSSPRRLAYTEREKLQSILDEYLK
FT                 EGIIRPSESEYASPIVLVKKKTGDLRLCVDYRKLNKTMIKDNYPLPLIDDL
FT                 LDTLVNKTIFSKLDLKHGYFHVFVENESIKYTSFMTPLGQFEFMRMPMGLK
FT                 NAPAVFQRFINKIFADMIREGKVVIYMDDIMIASKEIEEHLSVLKEVFERL
FT                 ARNKLELRMDKCEFLQASVQYLGFLVSSKGIQANDKGIEAIRDFPVPNKVH
FT                 GVRSFLGLCSYFRRFIKDFSRIAKPLYDLLKKDCEFVFEEKELDCFEMLKK
FT                 KLIEAPVLGLYYYKDEVELHTDASAHGFGAVLLQRKEDKKLHPIFYFSKAT
FT                 TKDEAKYHSFELETLAIIYALRRFRIYVQGRRFRIVTDCNSLTLTLNRIEL
FT                 NPRIARWALELLEYDFELVHKAGKLMQHVDALSRNTNICVVETVSFEDNLV
FT                 ICQAKDEKLKKIRMRLEKEDDKMFEMRNGVIYRKANDGKLLFYVPEEMEDK
FT                 ILYKYHNELGHLGRDKVMDAIVRTYWFANMKEKVVRHIDNCLRCVAFSPKS
FT                 GKGEGLLHSIPKGNVPFEIIHIDHYGPVDKGRSNKHLFVVIDGFTKYVRLY
FT                 ATKTTNTKEVIIALKDYFRSYSRPTCIVSDRGSCFTSEDFQKFLEEYNVKH
FT                 VKIATGSPQANGQVERINRILGPMIAKLADSEKGLHWDTVIEDVEFSLNNT
FT                 KQRSIAQMPSKMLFGIAQKGKIIDELRQKLEELDNTDNVRNLDEIRKKGTE
FT                 CQTKLQKDNERNYNEKRKASSKYKVGDYIVVKNFDCTVGVARKLIPKHKGP
FT                 FVIDKILGNDRYLIKDVEGFQLSRIPYQGVWSSQNIKHWIGKRR"
XX
SQ   Sequence 4715 BP; 1777 A; 617 C; 1128 G; 1193 T; 0 other;
     aaatcagaag tgggccgatc tcgtgccaaa taaacaatta aagacaatta agtaaaacga        60
     aaatggacgt tagcaacgca tcaattgcgc aattaaaacg gtggttaagt gcgttacggc       120
     taccaacaac gggaacgaag cgcgaattaa tattacgttt ggataaaatg tcaaaggaaa       180
     cgcgtaatta tctggaatca attaggaatc aagacgaaga cggcgatgga aacaacgatg       240
     aagacgaata tgaagaggat ctggaattag aaagccaaga agatgacaac gataatggcg       300
     acgaagacgg aggcaacaac aacgacaaag ctggagtcca agaaaacgaa aaagtcagag       360
     gcgaaggaaa cgacaaacac ggaggtggaa ctaaaggaaa agatggcgat aaaaataaga       420
     gtaaagttgg cggcgatcga agcggaaaag acggagacag aaggaacagc aaagatggag       480
     gcgaaagcag cggcaaagac ggcggcgaaa acaacaacag cgacggcggc agaaacaacg       540
     accacgacgg cggcgaaaac aacaacagcg acggcggcga gggagaagac aaagatggag       600
     atcatgcacg caatgacagg aatgaagccg gcagcagcgg cgcaaaagaa ggcgccactg       660
     aagaggtgaa aaaaggcaac gttgcgaagt cggagctttt ggaatttcac aacccaagca       720
     tcgacatttc attgggcatg gcaacacaag ttgtgagtga tttttcgggc gaaacttgcg       780
     cacgaaaatg gattacgcaa atgaaaaata ttgcaaccat ttatggagtt agtggaaaat       840
     acattaaaat gctgatgatt agtaaaataa aaggaaaagc aaacgtgtgg ctacatgcaa       900
     accctgagcg catcatgcta ccgctggagg agttaaccgc ggaactaatt tcaatgtttt       960
     cggataaagt ttcgaagtta gaggcaaggc gtcaattcga gaaccggaaa tggagttccg      1020
     gtgaaagttt tggaagctac gtggacgata aagtgatgct tggccagaga atcgacatag      1080
     atgcagagga gatgataagt cgcatcattg aaggaattcc taatcaaggg ctgcgtaatc      1140
     aggcacatat tcagtgcttt gaaaatgttg cacacatcaa acgtgcattt gcggaggtga      1200
     agttgcctaa atcttatggt gacaagaagg aggcagcagc gaacaaggac gagaaggaca      1260
     gcaaggacac gcgttgctat aattgcaatg ctaaaggaca ttgggcgaag gagtgcagga      1320
     agccaagacg agagaaagga tcgtgctatg catgtggcga gatgggacat tttgtggcga      1380
     agtgcctaaa gaacaaagtt aagagcgagg tcaagaacaa ttatgtaagg tattttgaaa      1440
     tttactttaa gaataacact aataccaggt taattacgga atgcctcata gatacaggga      1500
     gcccaatttc gtttattaaa atttctaaag taccagaaaa tgtttgtaaa atgccagttt      1560
     taagttcata tcatggaata aatgaaagtt atttggaaac ttatggcaga atattatgtt      1620
     atataaagaa aaaatttaat aaagtacatt ttcatttagt tgttgtggca aacaaatcta      1680
     tgagtcatga tgtagttctg ggaagggatt ttatggaagc acgtgattta aatctgaacc      1740
     ttgacacctt gaagatggtt acggtagaaa atttagaaaa tgttaaagac agttatgatg      1800
     ttagtgatga agagcaaata gttagtgatg ttgatgttaa acaaaagatt agaaatgcag      1860
     ttaggttaca agaagcaacg aaattcgaca taaatgtagt ggaaaaagaa ctgatgaata      1920
     ttaatattga agatgaatct gtagaataca aaattggtga acaagttgag tataaggtta      1980
     gacagcaatt tattaaaatt atagaaaatt tttatgttaa taaacaaaga ccaagggaac      2040
     cagaggttaa gtgtgaaata aagctgaggt tggatgactc gaaacctttt agcagttctc      2100
     cgagacggtt agcttataca gagagagaaa agttacagag catattagac gagtatttaa      2160
     aagagggaat tattaggccg agcgaatcag aatatgcatc tccaatagtg ttagtcaaga      2220
     aaaaaacagg tgatttgcga ttatgtgtgg attacaggaa gcttaataag acaatgatta      2280
     aagataatta tccattaccc ttaattgatg atttattgga cacattagta aataagacta      2340
     tattttcgaa attagacctt aaacatggat actttcatgt gtttgttgag aacgaatcaa      2400
     ttaaatatac ttcatttatg acgccgctag ggcagttcga atttatgcgg atgccaatgg      2460
     gcctaaaaaa cgcaccggcg gtgtttcaaa gatttatcaa taagattttt gcagacatga      2520
     taagagaagg aaaagtggtt atatacatgg acgatattat gatcgcaagt aaagaaattg      2580
     aagagcattt gagtgtactt aaagaagttt tcgaaagatt agcaaggaac aaattagaac      2640
     taagaatgga taaatgcgag tttctacaag cgagtgttca gtacttaggg tttttggtgt      2700
     cgagtaaagg aatacaagca aacgataaag gaattgaagc catcagagat tttccagtcc      2760
     ccaataaagt gcatggagtt agaagctttt taggattgtg ttcatatttt agaagattca      2820
     taaaggattt ttcgaggatt gcaaaaccat tatatgattt gttgaaaaaa gattgcgaat      2880
     tcgtgtttga agaaaaagag ttagattgtt ttgaaatgct aaaaaagaag ctcatagaag      2940
     caccggtact aggtttatat tattataagg atgaggtaga actacataca gacgcaagtg      3000
     cacatggttt tggtgcagta ctattacaga ggaaagagga taagaaattg catcctatat      3060
     tttatttttc gaaagctaca acgaaagatg aagcaaaata tcatagcttt gaacttgaaa      3120
     cgttagccat tatttatgct ctacgaaggt tccgaattta tgtgcaaggt aggcggttta      3180
     gaattgttac tgattgtaat tcattgacgt tgacgttaaa cagaatagaa cttaaccctc      3240
     gcattgcgag gtgggcgtta gagttactcg agtatgattt tgagttagtt cataaggcgg      3300
     gaaagcttat gcaacatgta gatgccttaa gtaggaatac taacatatgc gtagtagaaa      3360
     cggtgagttt tgaagacaat ttagttatat gtcaagcgaa agatgaaaag ttaaagaaaa      3420
     ttagaatgag gttagaaaaa gaagatgaca aaatgtttga gatgagaaat ggagtaattt      3480
     ataggaaagc aaatgatgga aaattgttgt tttatgttcc agaagaaatg gaagacaaga      3540
     tactgtataa atatcacaat gagttaggtc acttaggtag agataaggtt atggatgcaa      3600
     ttgttaggac gtattggttt gcaaatatga aagagaaagt tgttaggcat attgataatt      3660
     gtttgaggtg tgtagcgttt tcaccaaagt caggaaaagg agaaggatta ttacacagca      3720
     ttccgaaagg gaatgtacca tttgagatca tacatattga tcactacggg ccagtggata      3780
     agggaaggtc aaataaacat ctttttgtcg tcatagacgg gtttacaaaa tatgttaggt      3840
     tatatgcaac aaaaacaaca aacacaaagg aagttattat agcattgaaa gattatttta      3900
     gatcgtatag tagaccgact tgtatcgtct cggatagggg cagttgtttt acatctgagg      3960
     attttcagaa atttctcgaa gaatataatg ttaagcacgt aaaaatagca acagggtcac      4020
     ctcaagctaa tgggcaggtg gaaagaatta atcgaatatt aggaccgatg atagcgaaat      4080
     tggcagactc agaaaaggga ttgcattggg atacagttat tgaggatgtt gagttttcgt      4140
     tgaacaatac aaagcagaga agcattgcgc aaatgccgag caaaatgtta tttggaatcg      4200
     cacaaaaagg aaaaattata gatgaattaa ggcaaaagtt agaagaatta gataatactg      4260
     ataatgttag gaatttagac gaaattagga aaaaaggaac agagtgtcaa acaaagttgc      4320
     agaaagacaa tgaaagaaat tacaatgaga aaaggaaagc gagttcaaaa tacaaggtag      4380
     gtgattatat cgtggttaag aattttgatt gtactgtagg cgttgcaaga aagttaatac      4440
     ccaaacataa gggtccattt gtaatagaca aaattttagg aaatgacagg tatttaatta      4500
     aagatgttga aggttttcaa ttgtcacgta ttccatatca aggtgtttgg agtagtcaga      4560
     acattaaaca ttggataggt aaacgaagat gaagctcaaa tattatgtaa acttttgtaa      4620
     ataaataatt agtagtatct aagtcaaata gatgtaagaa tcaattgtaa aatatcacaa      4680
     gatcagggga tctttaaatg tcaggacggc cgaat                                 4715
//
ID   Gypsy-22_DBp-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-300
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 691-691 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. The consensus is ~83% identical to
CC   that of Gypsy-24_DAn-LTR.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 300 BP; 76 A; 58 C; 74 G; 92 T; 0 other;
     tgtagcagga ttgctactta gggtatatat atattagcta taagtgtatt gcataactgt        60
     aaactgttag tgtaagtcgg tgtcgttggc tgttgtcggt tctggctctc tctctcttgt       120
     gctctcatcg ctctcattgc tctttcagcg agtaatgagg gttgatgctg atcacgagtt       180
     gagagcggag tcagtcgaac accagcagcg atccgaagcg gatctagtca agactaataa       240
     agaaactaga ataagcaaag tgttggtgtt ttactccagg gacatcgtca tatccctaca       300
//
ID   Gypsy-22_DEl-I repbase;    DNA;    INV; 6717 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Putative LTR retrotransposon from the Drosophila elegans genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DEl-I.
XX
NM   Gypsy-22_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6717
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 460-460 (2012).
XX
RN   [2]
RP   1-6717
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           807..2174
FT                 /product="Gypsy-22_DEl-I_1p"
FT                 /translation="LPMSWEYREVKQEIVSDDSEDSEEVGFRPEVRDTDQP
FT                 EMNAEMIQALVANAVSAALNEQEGRLRSAFAAELEAVRTQVSALTVQAPQV
FT                 EVYKRVVPDPAVRCDVKLDIVKSLPTFSGSHDEYVSWRQAASDAYEVFKKY
FT                 DGSEAHYEAVVIIKNKICGPARSLLTSHNTVLNFDAIIARLDCTYADKTSL
FT                 RVLRQNLEMVRQGDSDLMTYYDEVERRLTLVTNKIVMSHNMDSATILNKEV
FT                 RDDALHAFIAGLKRPLKSLVLPAQPKDLPSALALAREAENSIERSAFAASY
FT                 AKAIEDKAPFYEGNRRNNKGQGRQWRSEDKNPHFVPKQNQSKSHEDNPWPK
FT                 RRDPEPLDQKKVQPMEVDPSTAKFRQETSWGKPQSNNNYKRQNSSQRQSDQ
FT                 RRQRVNNIAQSQQEVTDYTATAEAEVTTIEEDSDSAELNDLLHFLGSVPDC
FT                 RSSSDSWLADQ"
FT   CDS           2087..5209
FT                 /product="Gypsy-22_DEl-I_2p"
FT                 /note="envelope."
FT                 /translation="RLRRAKRPPPFFRERSRLPFVERQLAGRSIKILIDTG
FT                 AAKNYVKPVKELRNVMPVETPFTVSSIHGSSDVKNKCIMRIFGLDVPFFLL
FT                 DTLSTFDAIIGFDSLTRAGVALDLGNSVIKYANVTEKLKFFACQNVNFTKI
FT                 DDIVVPSSVKAEFKKIILKRIKVFSTSNEALTFNTSVIATIRTTSDEPVYS
FT                 KLYPYPMGAADFVNNEIKELLQNGIXRPSRSPYNSPAWVVDKKGTDDNGSK
FT                 KKRLVIXFRKLNERTVADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIY
FT                 LAEKDREKTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREEIGKICY
FT                 VYVDDVIIFSENETDHVRHIDTVLKRLLDANMRVAREKTKFFKESVEFLGF
FT                 IVTRGGTKTDPEKVRAIKEFPEPKNLFSLRSFLGLASYYRSFVKNFASIAR
FT                 PLTAILKGENGTVSKNMSKKVAVRFNETQRNAFDHLRNILASEDVMLTYPD
FT                 FKSPFDLTTDASASGIGAVLSQNKRPITMISRTLKDCELNYATNERELLAI
FT                 VWAIGKLQNYLYGNNEVRIFTDHQPLTYAVSDKNTNAKIKRWKAFIDENNG
FT                 KVFYTPGKQNLVADALSRQPLNNXEAEVQSDAATVHSEISLSYTIETTDKP
FT                 LNCFRNQIILEEANQPLRRDFIVFGNRTRHIINFNNKDLLVESVKEIINAN
FT                 VVNAIHCDFPTLARIQHALRQEFPATKFWHCKTFVSDITNANEQLEITNTE
FT                 HNRAHRAAQENAKQILRDYYFPNMSKLASEVVANCKVCNKAKYDRHPKKQE
FT                 LGTTPIPSYVGEMLHIDIFSTDKKIFLTCIDKFSKFAIVQPLISRAIIDVR
FT                 APILQLVNFYSNTKTIYCDNEASFNSETITSLLKNQYSIDVVNAPPLHSSS
FT                 NGQVERFHSTLAEIARCLKIDKKIEDTVELILRSTIEYNKSLHSVTESKPV
FT                 EVIHASSDEMKLAIKTKIDKAQRSNLDRVNPSRQNRVFEVGERVYLRNNKR
FT                 LGNKLTPLYSEERVEADLGTSVLIKGRVVHKDNIR"
FT   CDS           5477..6700
FT                 /product="Gypsy-22_DEl-I_3p"
FT                 /translation="MRKLLEVDVEHAQNLLEELKIHHRMARSLDFLGSVLK
FT                 VVAGTPDADDLSRINTNQASLIEANNRQVIINTETQKHINLLTDTVNKILR
FT                 EKKDGLVDSGHLYETLLARNRMLISEIQNCMITITLAKNNIINPTIFNHND
FT                 LKAIFDEQLTEVPIVNLMDVSRIKILQNNVLVHVIVQYPRVKRICKKVLLF
FT                 PVAHYHTMLQIEDNIVAECSDGILAVSDCTSTNLATFCKKAPHDSCARQLH
FT                 AGGAATCRTRPSNLEPLTIVDDGVIIVNEKLTRITIDDGPTVTIVGTHLIT
FT                 FERKAVINDSVYLNLNHSVNMSPGIAASPLINITGHDHILSLPLLQRMNEH
FT                 NLRLMQELRDDVSDGGSPRIWFAAGVAVSLTLCGLVLLQQDCRRRREAAQL
FT                 QKSIDELAVAEDGV"
XX
SQ   Sequence 6717 BP; 2101 A; 1577 C; 1452 G; 1583 T; 4 other;
     gacgcccaac ggattaatat tattactaat attcgaatcc cacccctgaa attgtacatt        60
     atgtaagtag ctgagcgccg acaatagcca aagtctacac atacacaaat accaatgcat       120
     acaatttcct atgcccagca ataggaattt tttacatata tataaaagtg actcgatttt       180
     cgatttctga ttcagatttt tatgagtgcg tggcaaaaaa aaaaaaaatt tatataactc       240
     aagttacgta cactcgtact ggcgattttt tgtgtgaatg aattattcaa atattaaatt       300
     aaaagatact tccatgttct gcgtgttgat ttaattttgt tcgatctaga tttatttaaa       360
     tgcgctataa ataaaagaaa ccatacgtct caaataacgt acactgtgcc aaggcaatca       420
     acatttatat gaattaatta tgcaaaggaa tattttattt ccttgttaag gctggccttt       480
     atacgcattc agagagccca gttgtttttc tccttgtgtt tcgctacaat tttacccact       540
     gtgcttgtat tgaattttgt actagagtta tccagtgtgt ctgtgttaat aatacaccca       600
     gtcaaattga cccacacttg ttgtcaccgt tctgcatttt aattttattc ttgggacaaa       660
     ttaatccaac atttttgtgt tttaggtgac gacccatatt tttcactaaa ttttttcggc       720
     tttacatcac caaagtggcc cgtcgaaacc tcttgtcttg agcccaatca atcagtcaaa       780
     ccctcgtatc tccccgcgcc ccttaactgc caatgagttg ggagtataga gaagtaaaac       840
     aggaaattgt tagcgacgat agcgaagata gcgaagaagt aggatttcgc cccgaagtta       900
     gggacacaga tcaaccagaa atgaacgcag aaatgatcca agcgcttgtc gcaaatgcgg       960
     tcagcgccgc tcttaacgaa caggaagggc gtttgagaag cgctttcgcc gcagaattag      1020
     aagcggttag aacacaggtt agcgcgctga cagtgcaagc gccgcaggtg gaggtctata      1080
     aaagggtagt accagaccct gcagtaagat gcgatgtcaa gttagatata gtaaaatctc      1140
     tgccgacgtt cagtggaagc cacgatgagt acgtttcatg gaggcaggct gcatcagatg      1200
     cctatgaagt attcaagaaa tacgacggca gcgaggcaca ctacgaggcc gttgttataa      1260
     ttaaaaacaa aatttgcgga cctgctcggt cactactcac gtcccacaat acggtgctaa      1320
     acttcgatgc aattatagcc agactagatt gcacatatgc ggacaaaacg tccttgagag      1380
     tgctacggca aaatttagaa atggttcggc aaggagattc cgaccttatg acatattatg      1440
     acgaagtgga gaggagactc accctcgtca ccaacaagat agtcatgtct cataatatgg      1500
     actcggcaac gatattgaac aaggaggtta gggacgacgc cctacatgct ttcattgcag      1560
     ggttaaaaag acctctcaaa tcactcgtgc tgccagcaca acccaaggac cttccgtccg      1620
     cactagcttt agcgcgggaa gctgagaaca gcattgaaag aagtgcgttc gcggcgtcct      1680
     acgcgaaggc catagaagac aaggcccctt tttatgaggg caataggcgc aataataagg      1740
     gccagggaag gcagtggaga agtgaggata aaaatcccca cttcgtcccc aaacaaaacc      1800
     aaagtaagtc tcatgaggac aatccctggc caaagcgcag ggatcctgaa cccttagacc      1860
     agaagaaagt tcagcccatg gaggtagacc cttcaacggc taaattcaga caagaaacaa      1920
     gctggggaaa gcctcaaagt aacaacaact acaaaaggca gaactcgtcc cagcgtcaat      1980
     cggaccaaag acgccaacgc gttaacaata tagcccaatc ccaacaggag gtaacagatt      2040
     ataccgccac agccgaggct gaggtcacca ccattgagga agatagcgac tccgccgagc      2100
     taaacgacct cctccatttt ttagggagcg ttcccgactg ccgttcgtcg agcgacagtt      2160
     ggctggcaga tcaataaaaa ttctcatcga caccggggcg gcaaaaaatt acgtgaagcc      2220
     tgtaaaggag ctaagaaacg taatgccggt cgaaaccccc ttcactgtga gctctattca      2280
     cggctccagt gatgtcaaaa acaagtgcat aatgcgcatt tttggactag acgtcccatt      2340
     tttcctcttg gatacattga gcacgttcga tgctataata ggcttcgatt cgctaacgcg      2400
     agcaggagtg gcattggact taggcaacag cgtaataaaa tacgcaaacg tcaccgaaaa      2460
     gctcaaattt tttgcctgcc aaaatgtcaa cttcacaaaa atcgatgaca tagtggtgcc      2520
     aagttcggtt aaagccgaat tcaaaaaaat tattctgaaa agaattaagg tgttctcgac      2580
     ctctaacgag gcgctcacct tcaacacatc ggtcatcgct actattcgaa ctacgagtga      2640
     cgaacctgtc tactccaagt tataccccta ccctatgggg gcagcagact ttgtaaacaa      2700
     tgaaatcaaa gagctgctgc aaaatggcat amtcaggccg tccagatccc catacaacag      2760
     ccctgcctgg gtggttgaca aaaaagggac cgatgataat ggcagtaaga agaagcgatt      2820
     agtaatcgwc ttcaggaagc tgaacgagcg aacagtcgcc gatcgctatc ccatgccgag      2880
     catacccatg attctagcga acttgggaaa agccaaattc tttaccaccc tagacctgaa      2940
     gtcagggtac caccagatat acttggctga aaaggaccga gagaagacct cgttctcagt      3000
     taatggtggg aagtacgaat tctgccgact acccttcggc ctaaaaaacg cagggagtat      3060
     tttccaaaga gccatcgacg atgtgctgcg ggaagaaatc ggcaaaatat gctacgtcta      3120
     cgttgacgat gttatcatct tctccgaaaa tgaaacggat catgtcaggc atattgacac      3180
     ggtgcttaag cgcctactcg atgccaacat gagggtggca cgagaaaaaa ccaagttctt      3240
     taaagagagc gttgagttcc tagggttcat tgtcaccaga ggaggaacaa aaacagaccc      3300
     agaaaaggtt agagcaataa aagagttccc agaaccaaaa aatctattta gcctcaggtc      3360
     cttcctaggc ctggcgagct attacagaag ctttgtaaaa aactttgcat ctattgctag      3420
     acccctaacc gccatcctca aaggggaaaa cgggacggtc agcaagaata tgtcgaaaaa      3480
     agtagctgtc aggtttaatg aaacccagcg aaatgcattc gaccaccttc gtaacatttt      3540
     ggcatccgaa gatgtcatgt tgacataccc tgattttaaa tcaccgtttg acttaaccac      3600
     tgacgcctca gcgagtggaa taggcgcggt actgtcccag aacaaaagac ccattaccat      3660
     gatttcacgc acgctaaagg actgcgagtt gaactacgcc accaacgaaa gagaattatt      3720
     ggcgatagtc tgggcaatag ggaaactcca aaattacctg tacggtaaca acgaggtacg      3780
     gatcttcaca gaccaccagc ctctcacgta tgcggtatcc gacaaaaata ccaacgctaa      3840
     aatcaagcga tggaaagcat tcattgatga gaacaacggg aaagtgtttt acacacccgg      3900
     aaaacaaaac ctagtagctg acgcgctatc gaggcaaccc ctgaataatt tmgaggctga      3960
     agttcagtct gacgcggcca cggtgcatag tgagatttcg ctctcgtaca ccatagagac      4020
     cacagacaaa cctcttaact gctttagaaa ccaaattatt ttggaagaag cgaaccaacc      4080
     gcttcggcga gatttcatag tcttcggaaa tagaactcgc catatcatca attttaataa      4140
     caaggacttg cttgttgaat ccgttaaaga gatcatcaac gccaacgttg tgaacgcgat      4200
     tcactgcgat ttccctaccc tggctcgcat ccaacatgcc ttgaggcagg aatttcctgc      4260
     gacaaagttc tggcattgta aaacctttgt cagtgacata accaacgcta atgaacaact      4320
     ggaaatcact aacaccgagc acaaccgcgc ccatagggct gcccaggaga acgcaaaaca      4380
     aattctccgg gattattact tcccgaacat gtcaaaatta gctagcgaag tggtcgcaaa      4440
     ttgtaaggtc tgcaataaag ccaagtacga ccgccatccc aagaaacagg aattgggaac      4500
     tacgcccatc ccatcatacg ttggsgaaat gttgcatatt gacatttttt cgaccgacaa      4560
     aaaaattttc ttaacttgta ttgataaatt ttctaaattc gctatcgtac agcccttgat      4620
     ttctagggca ataatagatg tacgagcacc tattcttcaa ttagtaaact tttattctaa      4680
     caccaagacc atatactgtg acaatgaggc ctcctttaat tcggagacaa tcacgtcatt      4740
     gctgaaaaac caatacagca tcgacgttgt caacgcgcca ccgctacaca gtagctccaa      4800
     tggccaagtt gagagatttc acagtaccct ggcggaaatt gccagatgcc tcaaaattga      4860
     taaaaaaatt gaggatactg tggaactaat attgaggtct actatagaat acaacaagtc      4920
     gctacattca gtcacagagt ctaagccagt agaggtcatc cacgccagca gcgatgagat      4980
     gaagctggca attaaaacca agattgacaa agcacaacga tccaacctag acagggttaa      5040
     tccttctagg caaaacagag tcttcgaagt cggtgaaaga gtataccttc gcaacaacaa      5100
     aagattaggg aataaattga caccgcttta ttcagaagag cgtgtagaag cagatctggg      5160
     aacatctgtt ctcattaagg ggagggtggt ccataaggac aacattaggt aggcacttca      5220
     ctcgccacat tcgcccctat attaaaaccc aatctttgct aaattccaca ggctcgccat      5280
     tatatccatc atactgctgt ccaccgcgag cgcgagaatc actgatttct cgcacgctaa      5340
     atacattccg gtgctagatg gcaatgtctt aatatgggaa cagtacggcc tggtcaggca      5400
     ctcgacaaat ctgtccgagt ttgccagcat aatcgactcc acagtcggag tgctggaact      5460
     gttcccacag tcccatatga ggaagctgct ggaagtggac gttgagcatg cgcaaaacct      5520
     attggaggaa cttaagatac accatagaat ggccaggagc cttgattttt tgggctcagt      5580
     ccttaaggtc gtggcgggta cacccgacgc ggacgattta agtagaatca acaccaatca      5640
     agcttcgctt atcgaggcta ataatagaca ggttataatt aacacagaga cacagaaaca      5700
     catcaaccta ctcacagata cagtaaacaa gatcctcagg gagaagaagg acgggcttgt      5760
     tgactcaggc catttgtatg aaacactcct cgccaggaat agaatgttaa tatcagaaat      5820
     ccaaaattgt atgatcacta tcactcttgc taaaaataat atcatcaatc ctactatttt      5880
     taatcacaat gacttaaagg ctatttttga cgaacagctc acagaggtcc caatagtcaa      5940
     ccttatggat gtatctagga ttaaaattct tcaaaataat gttcttgtcc acgttatagt      6000
     ccagtatcct agagttaagc gtatttgtaa aaaagtcctg ctcttccctg tcgcgcacta      6060
     ccacacgatg ctacaaatag aagacaacat cgtggcggaa tgtagtgacg gaatcctggc      6120
     agtctccgat tgcacatcca ccaacttggc cacattttgc aaaaaagcgc cccacgactc      6180
     ctgcgccagg caattacatg caggtggggc ggctacatgc cggacgcggc ccagcaattt      6240
     ggaacccctt acaattgtgg acgacggggt aattatcgtt aatgagaaac tgacgaggat      6300
     caccatcgat gacggtccca cagtaaccat cgttgggacc caccttatca cctttgagag      6360
     aaaagcggtg atcaacgact ccgtatattt gaacctcaat cactcagtga atatgagccc      6420
     gggaattgcg gcctccccct taattaacat cacaggacac gatcacatac tgagtctgcc      6480
     attgctacag cggatgaatg agcataacct gcgtctaatg caggagctcc gggatgacgt      6540
     gtcggatgga ggttccccga ggatttggtt cgccgcagga gttgccgtca gcctcacact      6600
     atgcggctta gtcctgctcc aacaagactg caggcgcaga cgagaggcag cccagctaca      6660
     aaaatccatc gacgaattgg ctgtcgccga ggacggcgtc taatttaagg ggggagt         6717
//
ID   Gypsy-22_DEl-LTR repbase;    DNA;    INV; 645 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Putative LTR retrotransposon from the Drosophila elegans genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DEl-I;
KW   Gypsy-22_DEl-LTR.
XX
NM   Gypsy-22_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-645
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 544-544 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 645 BP; 166 A; 170 C; 124 G; 185 T; 0 other;
     agttaacaac caactcccag cttaggctga gcaggccagt tcttattcct ctattaatat        60
     taatcattta tcatgtttat cattctctag tattaatcac cttttattat tattattatt       120
     attacacttc tccctcatgc atgtccaccc taaattgggt ccactttatt ggccttagag       180
     ctgagccagc acattgtgcc actcctagcc gtggctccct ttcagtggat gacagcgatc       240
     gtatgacttc tgcaaaatgt gcaaggtcag cggtctgcca cgggcatccg gctatgcatg       300
     agcttttgtt caatcttaag ttttagtttt aatttggatt tgaaataaag agcactagct       360
     ctgtcataaa actccggcct tagccgttaa attgattctg attattgaat ttggttatcg       420
     tgccttaagg gccgtgacaa cggagataag tatctcccac cataacttcg gaagaagtaa       480
     ggagtcgaag cgaccacccg actccccagt ggctgccaaa ccaggtggtc accaatacct       540
     caaccagcgg cagtatccta ctgccagtcc cccacggtta taacacctac cggctctacc       600
     cctgccacag aggagacgcc agccggcccg gacatttaaa taact                       645
//
ID   Gypsy-22_DMel-I repbase;    DNA;    INV; 7031 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7031
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 737-737 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1051..2133
FT                 /product="Gypsy-22_DMel-I_1p"
FT                 /translation="MANFNNLIRPPVLNLETESEAINRTEPNAPNLIQQHR
FT                 QVARQETHXQNRXIMAQPEQLAEIVRQILAEQLPTLLHQSQSSSFDFANVE
FT                 SQGINPEHQHNLQDLDKVPDIVRSLHDFSGDPAEFGSWKKSVDRILETYAH
FT                 TVGTAKYFGILHTIRNKIKGIADIAPDSYNVPLNWAAISKCLTLHYADKRD
FT                 ISTLEYQMTTIFQKPNQTVEEFHQVVYRHLSLILNKISCMELGRESELVMT
FT                 KLYRDKALDTFIRGLRGDLPRLLGIKEPTDLPSALHLCLKLENQTYRINHA
FT                 SGKIQQNTFRSTPQGPPPRPLPIPNNMGYQTRPILPPRPMPAGVFNANFGH
FT                 PQYRPAPNNFGQQFRQAR"
FT   CDS           join(5489..5713,5717..6163,6118..6867)
FT                 /product="Gypsy-22_DMel-I_3p"
FT                 /translation="MLLPLALANMEITNYTDAQTVSVYKGLGKLQISSTKL
FT                 IHLIDLEQLETELYKIREHTINDLKESYLYHTLTHEIVAFTALSTLTSKYR
FT                 KVRSINWIGSAWKFVAGNPNHDELTMIENNLNSLITNNNDQVIVNKQLQSR
FT                 INNLTTISNMLTNSIKKDNNFNNKIATSLQNQVRLIKEEIVNIKYTIQWAK
FT                 INVINTLLLNEFELNEVNKIFQKTILPLYQSQKCNISKNNITSLSIAEMLE
FT                 FVDVSVLHNKTAIIYIIKIPELDPTTYQDMLIKPVIKNNSIIHLETNEIFI
FT                 AQKEIINVPKNCKISNYFKICKKESTVNLKKTKCIAKLIEGKEALCDLSNA
FT                 EHIQEKEEIDGSLILLNNYTGNLIHNNITYNIKGTYLVYFWNDTVQINSKQ
FT                 FNNKEKSILKPGTPIIQMSPIEVERLKILSLESLEALNIKNTKHLNNITTH
FT                 STINHIAILCLLGTILLLHTSFNNLQNPL"
FT   CDS           join(2063..2380,2453..2875,2865..2975,2972..3157,
FT                 3114..3272,3257..3658,3640..3816,3783..4016,
FT                 3914..4183,4187..4381,4385..4564,4581..5228)
FT                 /product="Gypsy-22_DMel-I_2p"
FT                 /translation="MLTLDTHNTDQHRIILGNNFDKLDSTTPITPTVSTTS
FT                 SDCNKTPTTTRANGRGLHSRQINYMNRPQFDXSGKRPPIPITDPAKRQRNF
FT                 NIQTEIEQHRQWPITNRLPRTRAXLFXSQFFXVTDSSLPYFDCKVRSGEIL
FT                 KILIDTGSNRNYIQPKHVSNPLPNKTIFNAVSVGGDIKITHHKNANLFNDL
FT                 NTIVKFFLLPTLKTFDAILGNDSLKELGAVIDTKNQIMHLKNGTNIPIKEK
FT                 KLNQSMISQCNNTKVGYLTHNQRFELNRLLKNYPTLFAEPDENKLTYLTNV
FT                 KAEIRINTDTPVYSRFYQYPMALKAEVDKQVKDLRVPHIIHLCGSFQKNRM
FT                 LPTFICVDRSKKTGCFQRKMVIDYRKLNNVTIPDKYPIPDINGVIAQVGNN
FT                 KLFSFQAFFVLDLKSGFHQIPLKEEDIEKTAFSVNNGKYEFTRLPFGLKNA
FT                 PSIFQRALDDILREHIGNICYIYIDDIIIFSKDEESHCKNLKTIFETLSAA
FT                 NVKCQLDKCEFFKNKVEFLGFVISDKGIETNPTKVEPPNKGRTIANYPRPK
FT                 TLKELRSFLGLSGYYRRFILGYATMAKPLTDLLRGEDGRECRQRNRGRRTG
FT                 MSSKKLIHLDDKAIKAFEQLRSTLISKDVILQYPDFDKEFTLTTDNPTDQF
FT                 HLYLEHFPKLKNNTKRQRKKCRIHTNDRQSNRPISFISRTLSKTEEQYETA
FT                 KKKMLGIHWAVNFFKGYLYGGSKVKVYTDHEPLTHDCNWKGGIPIRRWKSY
FT                 LDEYNKELLKPGKENVGADALSRAPRQVEINSLTATQHSAQSSSHNLISNV
FT                 ESPINVFKNQIFILKEEPPDYKDIMKSKILTLAKQCQVCKEGKYDRHPTNP
FT                 EILETPIPEFPGHTIHIDIFSTEIFFYGTNGNLAQAKLINSKSIEDIRKPL
FT                 HDILFYFGVPKYVVMDNEKSFNSATITFMMRDQLGIQIFKAPPYKSSVNGQ
FT                 IERFHSTLAEIMRCLKTKQVHRSFDELLYSAVYEYNFTIHSVTKKRPLEIF
FT                 FGRNITTDPGEYDKSRQDNIEKLKSKHATDLKNHNEKRNKIKDYEPGQIVF
FT                 IKQNTRLGSKLSPRYKKETVKENRHTTIITETGRIVHKSNIKQE"
XX
SQ   Sequence 7031 BP; 2739 A; 1393 C; 1084 G; 1808 T; 7 other;
     ggcgcccgaa cagggacctg atgagaagga aatcttgtta agtcagatta gtacattagt        60
     acgactccat cagtcccaaa aacccctgtt gcattctttg gtacgcggat ttactaaagg       120
     caacccatag gcggtctacg tgttctgtaa ggtacgaccg cagaacatcc tctacgcgtg       180
     tgcatcgcag gatcccgagt aacaacgtaa aaaggacaac atccggatca ccaggaggag       240
     tagccgtatc aagttagcaa tgtaagtaga gttaagtgaa tcagattacc taaaacgaaa       300
     taagaagata agaaaactaa agcacaaata attcaaagta aaaatagcga tatgttaaaa       360
     gcaaaaacaa agtgaaagtg tttaaagaaa ttgacgaaag tctgtgaata aaataaataa       420
     gcgtaaagca ataaaataaa atatcactgc actaccaata aaaaaagcag tataacaagc       480
     tcaatcttgc gaatcccaag ggaccctcca aggtagaaga gcaaaaccag acactggttt       540
     tcaacaatta aaataaatta aattcacttt aaacagaaca cagttctttg atcacgttcc       600
     tttgctaaaa ctaaataaag taaaattcga aattaaaagc aattacaatt catacgcaac       660
     taaataagtt taaaaaaagt tttatgattc ataatttaaa gtaaaattca attaaagaaa       720
     atttttaata cgcgattaaa ttttactata aaataattaa attaggagta agtttcaata       780
     ttaacgtgct ataaaatttt gctattaaac actattgatt attaagatct atttaaattt       840
     taaatcaaat ataaattaac taaataattg aacggattta tcaacaaatc ttaagtgaca       900
     caatttaaaa tattttgttc cctcattcat tttatacact taaataattg attctattgc       960
     tataaccata cttagttacg cgtaaccata ctaaacaagt tgactattcg atatcatagt      1020
     aattctttac ctcaatggaa atttctcctt atggcaaatt tcaacaattt aattagacca      1080
     ccagtgctca acttagaaac agaatctgag gcaataaacc gaacagaacc taacgcacct      1140
     aatctaattc aacaacacag acaagtcgca agacaagaaa cacacmaaca aaacagaawc      1200
     ataatggcac agcccgaaca actagccgaa atcgttcgtc agattctggc cgaacaactc      1260
     ccaactctct tgcatcaaag tcaaagttct agctttgatt tcgcaaatgt cgagagccag      1320
     ggtattaacc cagaacatca acataattta caagatttag acaaagtccc cgatattgta      1380
     agatctttgc atgatttttc cggtgaccca gctgaattcg gttcctggaa aaagagtgta      1440
     gatagaatat tagaaactta tgctcacacc gtaggtacag caaagtattt cggtattttg      1500
     cacacaattc gaaataagat aaaaggcatc gcagacattg cccccgattc ttataatgtc      1560
     ccgttgaact gggcagcaat ctcaaagtgc ttaacattac attacgcaga caaacgagat      1620
     atttccacct tggaatatca aatgacaaca atattccaaa agcccaatca gacagttgaa      1680
     gaattccatc aagttgttta cagacatttg tctctaatac tcaataaaat aagttgcatg      1740
     gaattgggca gggaatcaga attggttatg accaagttgt acagggataa agctttagat      1800
     acctttatcc gaggtctccg tggcgacctc ccccggttgc tgggcataaa agaacccact      1860
     gacttgccat ctgctttgca cttgtgccta aagttggaaa accagactta ccgtatcaat      1920
     cacgcttcgg gcaaaattca acagaacact tttagaagca cacctcaagg gccgcctcca      1980
     cgcccactac ctatacccaa taatatgggt taccaaacca gaccaatact accccccaga      2040
     cccatgccag caggagtgtt taatgctaac tttggacacc cacaataccg accagcaccg      2100
     aataattttg ggcaacaatt tcgacaagct cgatagcaca acccccatca caccaaccgt      2160
     atccaccacc tcgtccgatt gcaacaaaac cccaaccacg accagagcca atggacgtgg      2220
     acttcactct aggcaaatta attatatgaa caggcctcaa tttgatgmct ctggtaaacg      2280
     acccccaata cctattacag atccagccaa aagacaaaga aattttaata tccaaactga      2340
     aatcgaacag caccgacaat ggccgattac gaacagactt tagcagaaca agatgaacag      2400
     wcagactatg aacaaacact tgtgaataca cagaagtgat tgacagcaat gaccaagaac      2460
     cagagcatsa ctattcstat ctcaattttt tasggtaact gactcctcac tgccatattt      2520
     tgattgtaag gtgaggagtg gagaaatctt aaaaatatta attgataccg gctctaatcg      2580
     aaattatatt caaccaaaac atgtctcaaa cccgttacca aacaaaacca tattcaatgc      2640
     tgtctctgta ggtggcgata taaaaataac tcatcacaaa aacgccaatt tatttaacga      2700
     tctaaataca atagttaaat ttttcctatt accaactctc aaaacttttg acgcgatatt      2760
     aggcaatgac agcttaaaag aattaggcgc agtcattgac acaaaaaacc aaataatgca      2820
     tttaaaaaat ggcacaaata ttcccattaa agaaaaaaaa ttgaatcagt caatgtaata      2880
     ataccaaggt tggatacctt acacacaatc agcgatttga attaaatcgc ttactcaaaa      2940
     attacccaac cttatttgcc gaaccggatg aaaactgacc tacctcacaa atgtgaaagc      3000
     cgaaatacga ataaatactg acacaccagt ttactctaga ttttatcagt acccaatggc      3060
     tttaaaagct gaggttgaca aacaggttaa agaccttcgc gttccccata taattcatct      3120
     gtgtggatcg ttccaaaaaa acaggatgct tccaacgtaa aatggtcatt gattatagaa      3180
     aactgaataa tgtaacaata cctgacaaat accctatacc tgacataaac ggagtcattg      3240
     cacaggtagg taataacaag cttttttcgt tttagacctt aaaagcggat ttcaccaaat      3300
     tccattaaaa gaggaagata tagaaaaaac agcattttcc gtaaacaatg gaaagtacga      3360
     gtttactagg ctcccctttg gtttaaaaaa tgccccttca atattccaac gcgcccttga      3420
     cgacatcctt agggaacaca taggaaacat ttgctacatt tacattgatg acattattat      3480
     ttttagcaaa gacgaagagt ctcattgcaa aaatctgaaa acaatttttg aaacactaag      3540
     tgcagcaaac gttaaatgcc aactagacaa gtgcgagttc tttaagaaca aagtagaatt      3600
     cttaggattc gttatatcag ataaaggaat agagactaac ccaacaaagg tagaaccata      3660
     gctaactatc cgagaccaaa gaccttaaag gaattaagat cctttcttgg gctatcagga      3720
     tactacagga ggtttatact gggctatgct acaatggcca agccactgac tgatttgctt      3780
     agaggggaag acggacggga atgtcgtcaa agaaattgat tcacttagac gataaagcaa      3840
     taaaagcatt cgaacagttg cgcagtacac tgatatccaa agatgtaata ctccaatacc      3900
     cagactttga taaagaattc acactaacga cagacaatcc aacagaccaa tttcatttat      3960
     atctagaaca ctttccaaaa ctgaagaaca atacgaaacg gcaaagaaaa aaatgttagg      4020
     aatacattgg gctgttaatt tcttcaaggg atatctttac ggtggttcaa aggtaaaagt      4080
     ctataccgat cacgaaccac ttacgcacga ttgcaattgg aaaggtggga tacctattag      4140
     aaggtggaag tcttatttgg atgaatataa taaagaattg ctctaaaagc cagggaaaga      4200
     aaatgtagga gcagacgcac tatcgagggc accaaggcaa gttgaaatta attcattgac      4260
     agcaactcaa catagcgctc aaagttctag ccacaatttg atatcaaatg ttgaatctcc      4320
     gattaatgtt tttaaaaacc aaatttttat acttaaagaa gagccacctg actataaaga      4380
     ttagattatg aaatctaaaa ttttaacatt agcaaaacag tgtcaggtgt gcaaggaagg      4440
     aaaatatgat aggcatccca caaacccaga aatattggaa actccaattc ctgagtttcc      4500
     gggacacaca atccatatag atattttctc tacagaaatt tttttctatg gtactaacgg      4560
     caattgacaa attttcttaa cttgcgcaag caaaattaat aaattcaaaa tcaatagaag      4620
     acataagaaa acccttacat gacatcctat tctattttgg cgtaccaaaa tacgtcgtaa      4680
     tggataatga aaaatctttt aattccgcta caataacttt tatgatgaga gaccagctgg      4740
     gcatacaaat ttttaaagca cccccttata aaagttccgt aaacggacaa atagaacggt      4800
     ttcattctac cctcgctgaa attatgagat gcttaaaaac taaacaggta caccgatctt      4860
     ttgatgaact attatattca gctgtctacg aatacaactt cacaattcac tctgtaacaa      4920
     aaaagcgtcc attagaaata ttttttggca gaaatataac cactgaccca ggagaatatg      4980
     acaaaagcag acaagataac atcgaaaaac tgaaatcaaa acacgcaaca gacttaaaaa      5040
     accataatga aaaacgcaat aagatcaaag actatgagcc agggcaaata gtgtttataa      5100
     agcaaaacac aagactaggt tctaaactgt ccccacggta caagaaagaa acagtaaaag      5160
     aaaatagaca tacaactatt atcacagaaa caggaagaat cgttcacaag agtaacataa      5220
     aacaagagta ataataaaat tttttagtcc gatactgcct agggaaacat gtccgtattc      5280
     gtctgaagta agaaacataa aatgaaataa aattttttta taataaatac cctctaactc      5340
     acaattgttg tccgtttgcg ggtatcgatc cgatcgtgag gtatcggcct atacccttaa      5400
     aaaattaatt cgttcactga ataaatgatt tcatatacat tttttttctt cttccccttt      5460
     tccccattac aggattttct tatttgtaat gcttctgcca ttagcattgg caaatatgga      5520
     aatcactaat tacaccgacg ctcaaaccgt ctcagtgtac aaaggattag ggaaactaca      5580
     aatatcatca actaaattaa tccatctaat agacctagaa cagctagaaa cagaattgta      5640
     caaaatacga gaacacacaa ttaatgactt aaaagaaagc tacctctacc atacactaac      5700
     acacgaaata gtttaggcat ttaccgcatt aagtactctg acctcaaaat atcgcaaagt      5760
     tcgatcaatc aattggattg gttcagcttg gaaatttgtg gcaggaaatc cgaatcatga      5820
     cgaattaact atgatcgaaa ataatttaaa tagccttata actaacaata acgatcaggt      5880
     aatagttaat aaacaactgc aaagtagaat caataattta acaacaatct caaatatgct      5940
     tacgaactca ataaaaaagg ataacaattt taacaataaa atagcaacaa gtctgcaaaa      6000
     tcaggtcaga ttgataaaag aagaaattgt aaacattaaa tataccattc aatgggcaaa      6060
     aattaacgta attaacacac tccttttaaa cgaatttgaa ctaaatgaag taaataaaat      6120
     atttcaaaaa acaatattac ctctttatca atcgcagaaa tgctagaatt tgttgatgtt      6180
     tcagtattac ataataaaac agcgattatc tatatcatca aaataccaga actagacccc      6240
     actacctatc aagatatgtt gataaaaccc gttataaaaa ataactctat tatacactta      6300
     gaaacgaatg aaatattcat agcgcagaaa gaaatcatta atgtacccaa aaactgtaaa      6360
     atatccaatt actttaaaat atgtaaaaaa gaaagcactg taaatctaaa aaaaacaaaa      6420
     tgtattgcta agttaattga gggaaaggaa gcgctgtgtg acttaagtaa tgcagaacat      6480
     attcaggaaa aagaggagat cgatggcagc ttaatattac ttaacaacta caccggcaac      6540
     ttaatacaca acaacataac ttacaatata aaaggaacat acctggttta tttctggaac      6600
     gataccgttc aaataaatag caagcaattc aacaataaag aaaaatctat cctaaaaccc      6660
     ggaacaccaa taattcaaat gtcacccata gaagtggaga ggttaaaaat tttgtcattg      6720
     gaatcattgg aggccctcaa catcaaaaac acaaagcact taaataatat aacaacacac      6780
     tctaccataa accacatcgc gatcttgtgc ttactgggca ccatactact acttcatact      6840
     tctttcaata atctccaaaa tccactttaa gcccagagag aaagtaacca ttcaaattca      6900
     acaagagctt cccacgctta atattaaact taaaacaaat aatttaaagc caaagccgat      6960
     acagcccgaa ttcaacaata ttccctattt ctaacaccca cttgaggaca agtaggatcc      7020
     tgagggggga g                                                           7031
//
ID   Gypsy-22_DMel-LTR repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-411
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 722-722 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 411 BP; 134 A; 111 C; 66 G; 100 T; 0 other;
     agttaacaac agaaactttt gttactcctc tcgacggccg atacaatgaa cccttagtac        60
     tttgcctgca agaattgtgc aacaaagtat tctagggaaa acaagagttc aaaaatccta       120
     aatcaacaat attataaaca tccgccgcga cgaacccacg caacaccgaa attgcagaga       180
     ttgcaattcg atccagctca atcaagttca aaccactcca atgctccgcc tagctgccga       240
     tcacgccatc agcgacgacg ccaacgttct gccgacgcct ctgccagaca cccacagctt       300
     acttagggct tactctaatt ctcaatgttc agttcttaat ttgaatccga aataaaaggt       360
     caacttcgca gattggactc gttttaattt ccacaaagga aaatattaac t                411
//
ID   Gypsy-22_DMo-I repbase;    DNA;    INV; 4353 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-4353
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2960-2960 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..1186
FT                 /product="Gypsy-22_DMo-I_1p"
FT                 /translation="MAKLQFGFELVADEDKKSNIILIKSITDDDGKKYSIP
FT                 QNYQSCKAHPELMKLPEFRNVAKSLQKRGQFRNVWMKLSDEILQLYRDGSG
FT                 NMIINNYLLQDISGMEQSKANTSADQIDTTLIRLLEKLCESESMKDCKSTN
FT                 LNRACDKFVLDRFEGKKMNSNQWLQTYESECNRLGISKDVEKIEALRLFLD
FT                 EAAEEWFNSMLIKHTISSEWVTWKENFLQTFADRGWSSVTYALNYKYISGS
FT                 LLDYALKKERLLLETDKNMNNITLVNLIVHGLPKFIRNKIDRQNVTAPVAL
FT                 FSELRKFEDILETKYVKANENRSKTFKTEMKPKFKQPCKICEGRGNKNRYH
FT                 PVDMCWFNVRENKSTESNKRINSVLEIDTTEDPKN"
FT   CDS           join(1174..2217,2157..4055,4036..4290)
FT                 /product="Gypsy-22_DMo-I_2p"
FT                 /translation="RSKKLNIPPLIEVKVVLNEKIECRGIYDPGSNVTLIN
FT                 SNLVKIKHLSKDNHKSTIKTISGRGKTDGLIALNARILGTEDRINAFVYNN
FT                 IDFNYDMILGLDTIKRFGLTHDSDLNIHLHKELKSDVDNKNKLKYIKITNN
FT                 NNNKSQNKNEIKIENAFAKIQVNFNEGINVNDFNININHLNSDQRSKINSL
FT                 XXYKHIFAKDKYDVGKVRNYEAFIDLQVEKYCYKRPYRCSXEDKVEIEKQV
FT                 AQLLKHNLIEESYSPFAAPVTLAYKKDEGKKSRLCIDFRDLNKLIVPQSQP
FT                 FPLIEDLMVKTVDCKFFTTLDINSAFWSIPLRIQDRPRTGFVTQEGHYQWT
FT                 SSLLDAKDWICDTRRSLSMDILPFGLKTSPATFQRILVNIIRKYNLSNFVV
FT                 NYIDDIMIFSKTFDDHLIHLRQLLDAIVKEGFRLKLTKCNFAASSVRYLGH
FT                 FIAENLVTPLKDNLKSIIDFPLPQNKKNIRQFLGKVNFYGKYIPNVSILLD
FT                 PLHNLLRKDVRFVWSNDCEIAFSKVKQYLCSKPILAIYNPKAQTFIYTDAS
FT                 IKGIGAILKQQQNDGTQKPIAYFSKKLNDSQKKKKAIFLECLAIKECLKFW
FT                 QHWLIGIEFIVYTDHKPLEHLNIKNRTDDELGDMTHYLSQYNFKIIYNPGK
FT                 DNTEADCLSRNPVYEFYENNDDKLQTVNIISINDIKNDQKQNADLKDKKHI
FT                 IIENDIYYKQNGKNKKKIVLSEEYSKILIKKIHNEFCHIGVGQIEAKMKPF
FT                 YTAPHLSDNIKMICKICETCIKNKTRLNKKFGCLSYLGPAERPLQIMSLDT
FT                 IGGFGGQRSTKRYLHLLVDHFTRFAYISCSKNQLACDFVKLIEXIPKENSI
FT                 EILLADQHPAXNSNEFKRYLKEKNIELILTAVDAPFSSGLNERLNQTLVNK
FT                 IRCMLNDNGATKRAWSKIAEECVKKYNRTSHTVTGFSPIYLMNXEVTDLLP
FT                 PELKNMNNYSRNLEQDRNLALLRSNTHCSDQTHEYNKALFDKNRKKHDFQK
FT                 GDMVYITNGNKLNRRKMDEIRIGPFEIEEKISDSICKINTGRGKKSISLYH
FT                 VTKLIPMAD"
XX
SQ   Sequence 4353 BP; 1776 A; 650 C; 736 G; 1185 T; 6 other;
     aatcaacaat tagtacgttt ataggcgaat aatacaaaaa aacacacaca ctatggcaaa        60
     gctacaattt ggatttgaat tggttgctga cgaagataaa aaatcaaaca ttattctaat       120
     aaagtctata acagacgacg atgggaagaa atacagcatt ccacaaaatt accaatcatg       180
     caaagcacac cctgaactta tgaagctacc agaattccgg aacgttgcaa aatcattgca       240
     aaaacgggga caattcagga atgtgtggat gaaactaagt gacgagattt tacagctata       300
     cagagatgga agtggtaata tgataatcaa taactatctg ctacaagaca tttctggcat       360
     ggaacaaagc aaagcaaaca cctctgcaga tcaaatagat acaactttaa taaggcttct       420
     tgaaaaatta tgtgaaagtg aatctatgaa agattgtaaa agcacaaatt tgaacagagc       480
     atgtgacaaa tttgtgcttg atagatttga aggtaaaaaa atgaattcaa accaatggtt       540
     acagacatat gaaagtgagt gtaataggtt aggtattagc aaagatgtag aaaaaattga       600
     agctttaaga ctattcttag atgaagcagc agaggagtgg tttaattcta tgttaattaa       660
     acatacaata agctctgagt gggtaacatg gaaagaaaat tttttacaaa cttttgcaga       720
     tagaggttgg tcttctgtca cctatgcgtt aaattacaaa tatatctctg gctcacttct       780
     ggattatgca ttaaaaaaag aacgtttatt acttgaaacc gataaaaata tgaataatat       840
     aactttagta aacctaattg tccacggact tccaaagttt ataagaaaca aaattgacag       900
     acaaaatgtc acagccccag ttgctttatt tagtgaactg agaaaatttg aggacattct       960
     cgaaacaaaa tatgtcaaag caaatgaaaa tagatctaaa acatttaaga cagaaatgaa      1020
     acccaagttt aaacaacctt gtaagatttg tgaaggcaga gggaataaga atagatatca      1080
     ccctgtagat atgtgttggt tcaacgtcag ggaaaacaaa agcactgaat caaataaaag      1140
     aataaactca gtattggaaa ttgacactac tgaagatcca aaaaactaaa tattccccca      1200
     ctaattgaag ttaaagtagt actaaatgaa aaaattgaat gcaggggtat ttatgatccg      1260
     ggctcaaatg tcacacttat aaattctaat ttagtgaaga ttaaacattt gtcaaaagat      1320
     aaccataaaa gtacaataaa aacaattagt ggcaggggta aaactgatgg cttgatagca      1380
     ttaaatgcaa gaatactcgg tacggaagat agaatcaatg cgtttgtata caacaatatt      1440
     gatttcaatt atgatatgat cctcggatta gacactataa aaagatttgg attgacccac      1500
     gactcagatt taaacatcca tttacataaa gaattaaaat cagatgtaga taataaaaat      1560
     aagttgaaat atatcaaaat aactaataat aataataata agagtcaaaa taaaaatgaa      1620
     attaagattg aaaatgcatt tgctaaaatt caagtaaatt tcaatgaagg cattaatgta      1680
     aatgatttca atattaatat taatcattta aatagtgacc aaagaagtaa aataaattcc      1740
     ttgwtaaawt ataaacatat ttttgccaaa gataagtatg atgtcggcaa agtaaggaac      1800
     tacgaagcct ttatagacct acaggtagaa aaatactgtt acaaaagacc atacagatgt      1860
     tcgttwgaag ataaagttga aatcgaaaag caagtggctc aattattgaa acataaccta      1920
     attgaggaat cctatagtcc atttgcagca ccagttacat tggcttataa aaaggatgaa      1980
     gggaagaaga gtagactatg tattgatttt agagatttaa ataaactaat agtacctcaa      2040
     tcacaaccat tccctttaat tgaagattta atggttaaga cagttgattg taaatttttc      2100
     acaacgctgg acataaactc agccttctgg tctataccat tgagaattca agataggcca      2160
     aggactggat ttgtgacaca agaaggtcat tatcaatgga catcctccct tttggattaa      2220
     aaacatctcc tgcaacattt caaagaattc tggtgaatat aattagaaag tacaacttat      2280
     caaattttgt tgtaaactac atagatgata ttatgatatt ctcaaagacg ttcgatgatc      2340
     atttaattca cttgagacaa ttgttagatg ctatagtaaa ggaaggattc cggttaaagt      2400
     taacaaaatg caattttgcg gcaagttcag tcagatattt gggtcatttt atcgcagaga      2460
     atttggtgac tcctctgaaa gataatttaa aatctataat agactttcct ttaccacaaa      2520
     ataagaaaaa catacgacag ttcttaggta aagtgaattt ttatgggaaa tacattccta      2580
     acgtctcaat tttgctcgat cccctacaca acttgctcag aaaagatgta aggtttgttt      2640
     ggtcaaatga ttgtgaaata gcctttagta aagtaaaaca atacttgtgc tcgaaaccaa      2700
     ttctggccat ctacaatcca aaagctcaaa cttttatata cacagacgca agcataaaag      2760
     gtattggagc gatcttaaaa caacaacaaa acgatggtac gcaaaaacca atagcttatt      2820
     tttcaaaaaa attgaatgat tcgcaaaaaa agaagaaagc aattttttta gaatgcttgg      2880
     ccattaaaga atgcttaaaa ttctggcaac attggctgat tggaatcgaa ttcattgttt      2940
     acacagacca caaaccacta gagcacttaa acataaaaaa cagaacagac gatgaattgg      3000
     gtgatatgac acactacctt tctcaataca atttcaaaat aatatataat cccggaaagg      3060
     ataataccga agctgactgc cttagcagaa atcctgttta cgaattctat gaaaataatg      3120
     atgataaatt acaaacagta aatataataa gtataaatga tataaaaaat gaccaaaaac      3180
     aaaacgcaga tttaaaagac aagaaacata ttattatcga aaatgatata tattacaagc      3240
     agaatggaaa gaataagaaa aaaatagttt tgagtgaaga atatagtaaa atacttataa      3300
     agaaaataca taatgagttc tgccacattg gggtaggtca aatagaagcg aaaatgaaac      3360
     cgttttatac agcaccacat ttatcagaca atataaaaat gatctgcaaa atatgtgaaa      3420
     cttgtataaa aaataaaaca agactaaaca agaagtttgg atgtttgtca tatttaggtc      3480
     ctgcagagag accgttacaa ataatgtcct tagatacaat tggaggtttt ggtggacaac      3540
     gatcgacaaa aagatatttg catttattag tagatcattt tactagattc gcatatatat      3600
     catgttcgaa aaaccaactc gcttgcgact tcgtaaaact aattgaaama ataccgaagg      3660
     agaattcgat tgaaatcttg cttgcagatc agcatccggc cakaaattca aacgaattca      3720
     aaagatacct taaagagaaa aatatagaat taattctaac cgcagtagat gccccttttt      3780
     ctagcggtct gaacgaaaga ttaaaccaga ccttggtaaa taagataaga tgtatgctca      3840
     atgataatgg tgcaacaaaa agggcgtggt cgaaaatcgc agaagaatgc gtaaaaaaat      3900
     ataatagaac atcgcataca gtaacaggat tttctcctat ctatctgatg aackgagagg      3960
     tcactgactt actacctccg gaactaaaaa acatgaacaa ctattcaaga aatttggaac      4020
     aagatcggaa tctagcactg ctcagatcaa acacatgaat ataataaagc actatttgat      4080
     aaaaatagaa aaaaacatga ttttcaaaaa ggcgatatgg tctatataac caacggcaat      4140
     aagctaaaca ggagaaaaat ggatgaaata agaattggtc cctttgaaat agaagaaaaa      4200
     atctctgatt cgatttgtaa aataaacact ggtcgtggaa aaaaatctat atctctttac      4260
     catgtcacaa agctcattcc catggctgat taatccataa gttctaggct taattcatat      4320
     ttcatgggaa attaagcaac tcgggggtgg aga                                   4353
//
ID   Gypsy-22_DMo-LTR repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-422
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2949-2949 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 422 BP; 165 A; 45 C; 62 G; 150 T; 0 other;
     tgtaagcttt gtgtacattt acatttccct aatcatatgt ttgtgtaatc atatggttgt        60
     gagcatatgt gggccacata tcgatgatca caaataacta tcggagagat ataagaagat       120
     gaaaaagaga gattggtgat acaaatacga gtataataaa cttaataata aacttaataa       180
     taaattaatc aatattaaac tacattaaaa ataattaaat taatcttaag ttaatgaaaa       240
     taattataat aattaattat tgaagtttaa tggaatgcat aggagcataa acatttaatt       300
     gttgattctc ttattttagg ttagtaacca tgtgctatta tcttttcgtt gtaataaaaa       360
     aaactcttat tttagatgaa tcaaattgtg tcgttgctcc aagggagttc caacatatta       420
     ta                                                                      422
//
ID   Gypsy-22_DWil-I repbase;    DNA;    INV; 6217 BP.
XX
AC   scaffold_181130;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DWil_;
KW   Gypsy-22_DWil-LTR; Gypsy-22_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181130; Positions  413095  406879.
XX
CC   Positions [5075-5581] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1422..2393
FT                 /product="Gypsy-22_DWil-I_2p"
FT                 /translation="MDSGNASVSLPTTISTPNVTPTISSIANNPTSLSPTD
FT                 ILAFIKELPTFDGIPNKLQDFIVNVEEVIALIRGTDQTPYSSLLLRAIRNK
FT                 IVGRANDALKLSNTALTWDDIKANLIQHYGNKKSEAMLIRDLQNFPDSLSL
FT                 GQLFYSILKIRSQLTDILQNTNQNSTDKPKLYDEICLNTFLINLREPLKTL
FT                 IKSKNPQNIKEAYEHCRVEKTFYSQKPNTSQNFRAQVTPYLRPQNIRNHPN
FT                 NNPYSNNRSQLFRNNSTISQPNINNQANNNYHNRNSTVNPFNSTGPTRNQL
FT                 HNINEQQSSTELCNINDAGNFFETASENQQGT"
FT   CDS           2630..5899
FT                 /product="Gypsy-22_DWil-I_1p"
FT                 /translation="MKIDLLLFDFHPHFKGLLGMDVLRKLKANINLASFCL
FT                 ETPKSCLKISLQDNPVTEVHIIPASSKSLITLPVRMKEGNFYSQQTMYNKH
FT                 LEISEGLYNSVNGYSKMVIVNNSLEDQQLYLEQPLETIPYDQNHYIEIYNI
FT                 NSDNQSLPHVHKYVTKLKTDHLNSEEKIALIQLCSKYTDLFYDDNQKLTFT
FT                 SDIKHYIRTTDDTPIFVKSYRYPYALKKEVKDQIDSMLKQNIIKNSYSPWS
FT                 APVWVVPKKSNSLETQKWRLVLDYRKLNEKTISDRYPIPNINEILDQLGKS
FT                 NYFSTLDLASGFHQIEMNQADRSKTGFTVEGGHFEFIRMPFGLKNAPATFQ
FT                 RVMDHVLGDLVGSICLVYLDDIIIFSPSLQKHLIDIRQVFDRLRSANLKLQ
FT                 IAKSDFLRREVNFLGHIVTQDGVKPNPNKIKSIQEFPIPKNRRQIKSFLGL
FT                 LGYYRKFIKDFARITKPLTQQLKGTKAVTIDEEYCKTFEFCKTLLCNNPIL
FT                 TYPNFKEPFILTTDASNYAIGAVLSQKLSGSDKPISYASRTLSDEETRYSA
FT                 TEKEMLAVHWAVKHFRPYLFGKKFILVSDHKPLTWNTGPFSTNDKVARWKL
FT                 QLLEYEYEFQYKKGSQNVVADALSRIRPEANIIVNNIDVENFSNNKVTSSL
FT                 YNLASSIIIVEKPLNDFNLQIVLAEGSPASYQVSTPFKNKLRRTITEPRLN
FT                 SDTVLDILKKILKINRTLAMYTSDSIFQIVLDVFSKHFSYNKLFKLLRCTT
FT                 LLDDITNTTDQEKIVNDYHNNNNHRGIDETLMHLKRKVYFPHMKSKIAQII
FT                 KGCEICLTLKYDRQPQKPPFEVPETPCKPMDIVHIDIYTINKNYNLTLIDK
FT                 FSKFACAYPIPNRTCINVVTAMKHFFSLFGIPKKIVYDQGAEFSGSIFKDF
FT                 CNQYDIQCHITSFQQSSSNYPVERLHSTLTETYRIITELKKKNKQINKHEE
FT                 TLSETLLTYNNAIHSSTKYTPFELFTGRTPIFEQTIKYDTNHEYLQKLNFF
FT                 QSKLYQEVKEILHKNTKSKLDKLNETRKSAAPLSTNESIFRKENRRNKLTP
FT                 RFSKHKVLRDNGNTFITTRLQKIHKSKIRRTTK"
XX
SQ   Sequence 6217 BP; 2426 A; 1213 C; 896 G; 1682 T; 0 other;
     tctagctccc ggtggtaatt ggcgcagctg ggtcaggaat agacctactt aatgttcaca        60
     ttgagaacta tgtcttaaaa gcattggtaa ttggaacgga atcaattgtt gataatcgtt       120
     tacatggcaa aaccaatcat ccccaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaattc       180
     ataaattaac ttccaatttt tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaagg       240
     aatatgtata tatgtacatg gatgcatata cacatgtgta catgtaaatc ttataattca       300
     atggaaatgt ttatatgctg caaagctaca agatctcttt tacgaaatac acattgtttg       360
     tcgctcattc tgctttcaat ttcataattc ggcggaattg ccaaaacgct acaaaaccac       420
     aatacttagt attgtatttc gggcgaaata gatctgatag cagaaccacg ctgaacaaac       480
     gacgcgtcgt cgcgacgcta aaaagctagc aatttctggc gaaactgatc agctagctga       540
     gctgcgatgg gcagacgaag cggcaaagcg gcacattcta gtgaaatcga tctgctaagc       600
     agagctgcaa ttggcaaacg aagcattcat aagtagtaac gttttattgt aggctcattt       660
     acaaaagtga gctcgagttg caaagacgtt aataaaatta gaagttcagt ttaaagttgt       720
     gacaccaagt ttaagaacaa tatactatta attactatta acaatatact attaatacat       780
     aataaaagta ataaaggttt gttacaaaat atttttaaag aacattaaga acaatacaaa       840
     cgatgcgatg ttagtgccat acagtgaaac aaaaaatata catatatata tatatatatg       900
     tgtaccacct atgtgtgtat atacatgtat atatatatag atgtatatgt gtgcgggtgt       960
     gtgttgtgtg tatgtgtatg tccatagaca attataatta tgttcaaaac attgcagaat      1020
     tttaaaacac tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaacaca aaaaaaaaaa      1080
     aattaaaaaa atattagaaa taaaaaaaaa aaaaataata ataataataa ggataataat      1140
     acagatgtat attagtgtac gtgtgtgcat gtgtatgtgt gtgtgtgtgt atgtgtatat      1200
     atatgtatgt gtgtgtcggt gttacatata tgtacatgta tataaataaa tataataatg      1260
     tttaaaacat tacagaattt agaaacactc acgtcgacaa atcacgtcaa cataaatgcc      1320
     aaaaaaaatc tacattccaa gcagccacaa aaagaacatc taccagacga acggcaagac      1380
     tcatttatga agatccagtt cattcaccca acgacgtagc aatggattct ggaaacgcct      1440
     cagtgtcact tcccacaact atatcgactc caaacgttac gcctacaata agcagcatag      1500
     ccaacaaccc aacatcttta agtccaacgg acatccttgc ctttatcaag gagctaccta      1560
     cttttgacgg catccctaat aaactgcaag acttcattgt caatgtggaa gaagtcatcg      1620
     ctttgatcag aggaactgac cagacaccat acagctccct tctgttaaga gccatcagga      1680
     acaaaatcgt aggtagagct aatgacgcct taaaactatc caatactgca ctcacctggg      1740
     atgacatcaa ggccaatctc atacagcact atggtaacaa gaaaagcgaa gctatgctta      1800
     ttcgcgattt acaaaacttt cccgatagct tgtcattagg tcaactattt tatagtattt      1860
     taaaaataag atcacaattg acagacattt tacaaaacac aaatcaaaac tcaactgaca      1920
     aaccaaaatt atatgacgag atatgcttga ataccttttt aattaatcta cgagaacccc      1980
     ttaaaacttt aataaaatca aaaaacccac aaaatatcaa ggaagcttat gaacattgcc      2040
     gtgtcgaaaa gaccttctat tcgcaaaaac caaatactag ccagaatttt cgagcacagg      2100
     taacaccata cttacgcccc caaaacataa gaaatcatcc aaacaataac ccctattcta      2160
     acaatagaag ccaattattt agaaataatt caaccatttc tcagcctaac attaacaacc      2220
     aggctaataa caactaccat aataggaatt caactgtaaa tccttttaat tcaacaggcc      2280
     caactaggaa ccaattacac aatatcaatg agcaacaatc ttcaactgaa ctttgtaata      2340
     ttaatgacgc aggaaatttt ttcgaaactg cctccgagaa ccaacagggt acttaacaaa      2400
     aaaatcacac ggatcgacac tcccttttat atggataaat tccgttacaa ctcaacccat      2460
     aaaattctta atagatacag gttccacaaa ttcatttgta agcccaacca tagtgagcaa      2520
     tgtcgatcgc aaaactcttg ataatcctat aactgtacag tcagtgttga accaacacgt      2580
     cataaaagaa aaaaccacga ttcaatcact taaagagttt aatgaacaaa tgaagataga      2640
     cttacttctt tttgattttc acccacattt caaaggtttg cttgggatgg atgtccttag      2700
     aaagttaaaa gccaatatta atctggccag tttttgttta gaaactccaa aatcatgttt      2760
     aaaaatttct ttacaagaca acccagtaac cgaagtacat attatcccag cttcttcaaa      2820
     atctttaata acccttccgg tccggatgaa ggaaggtaat ttctactctc aacagacaat      2880
     gtataataag cacttagaga tttcagaagg tctatacaat tcagttaacg gatatagcaa      2940
     gatggtaatc gtaaataatt cacttgaaga tcagcaatta tatttagaac agccattaga      3000
     aaccataccc tatgatcaaa atcactatat tgaaatatac aatataaatt cggacaatca      3060
     aagtctccca catgtccaca aatacgttac caaattaaaa accgatcacc taaactccga      3120
     agaaaaaatt gcattaatac aactctgtag caagtacaca gacctttttt atgacgacaa      3180
     tcaaaaacta acatttacca gcgatattaa acattatata cgcacaactg acgacacgcc      3240
     aatctttgtt aaatcatatc gataccccta cgccttaaag aaagaagtaa aagaccaaat      3300
     agactcaatg ctaaagcaaa acataattaa aaacagttat tcgccttgga gcgcccctgt      3360
     ttgggtagtt ccaaaaaaat cgaactccct tgaaacgcag aaatggagat tagttttaga      3420
     ttatcgtaaa cttaacgaaa aaacaatttc agaccgttat ccaattccaa atataaatga      3480
     gattttagac caacttggta aatctaatta cttctcaact cttgatttag ctagtggatt      3540
     tcaccagatt gaaatgaacc aagcagatag gagtaaaaca ggttttacag tcgaaggtgg      3600
     ccactttgaa ttcatccgta tgccgttcgg gttgaagaat gcacctgcaa cgttccaaag      3660
     agtaatggac catgtccttg gagatctagt aggttccatt tgtttagtat acctagacga      3720
     cattataatt ttttcaccat ctctacaaaa acacctgata gatataaggc aagtatttga      3780
     tagactcaga tccgctaatc ttaagctaca aatcgcaaaa tctgacttcc ttcggagaga      3840
     agttaatttt ctaggtcata ttgtaactca agatggggtc aagcctaacc caaataagat      3900
     aaaatccatt caggagttcc ctatcccaaa aaacaggaga caaattaaat catttctagg      3960
     ccttcttggc tattatagaa aatttattaa agactttgcc cgcataacaa agccactaac      4020
     acaacaatta aaaggtacaa aagcagtaac aattgatgaa gaatactgta aaacttttga      4080
     attctgtaag acattacttt gtaataatcc aatattgacc tacccaaact ttaaagaacc      4140
     ctttatatta actactgatg caagcaatta tgccatcggc gctgttttat cccaaaaatt      4200
     atctggaagc gacaaaccta tttcctacgc cagtcgcaca ttatccgatg aagaaacccg      4260
     ttattcagct acagaaaaag aaatgcttgc agtccattgg gcagtaaaac acttcagacc      4320
     ctacttattc ggaaaaaaat ttattttagt ttcagaccac aaaccattaa catggaacac      4380
     aggaccattt tccaccaacg acaaggtcgc ccgttggaaa ctacaattac tagaatacga      4440
     atacgaattt caatacaaaa aaggctctca gaacgtagtt gcagatgcac tgagtcgtat      4500
     ccgacccgaa gcaaatatta tcgttaacaa tatagatgtc gaaaattttt caaataacaa      4560
     agtaacatct tctctgtata atcttgcatc aagcataata attgtcgaaa aaccacttaa      4620
     cgattttaat ttgcagattg ttttagctga aggttctcct gcttcttacc aggtttctac      4680
     tccctttaaa aacaaattaa ggagaaccat cacagaaccc agacttaact cagatactgt      4740
     actagacatt ctaaaaaaaa ttttaaagat taacaggaca ttagcaatgt acacatcaga      4800
     cagtattttt caaatagtac tagatgtgtt ctctaaacat ttttcttaca ataaattatt      4860
     taaattactt aggtgtacaa ctcttttaga cgatatcact aatacgaccg atcaagaaaa      4920
     aatagtcaat gattatcaca ataataacaa tcaccggggt attgatgaaa cattaatgca      4980
     ccttaaaaga aaagtctact ttccacatat gaaaagcaaa atagcgcaaa taataaaggg      5040
     ttgtgaaatt tgcctcacac ttaaatacga tagacagccg caaaaaccac cttttgaagt      5100
     accagaaact ccttgcaaac caatggacat agtccatata gacatataca cgataaacaa      5160
     aaactataat cttacactaa tagataagtt ttcaaaattt gcgtgtgcct accctatacc      5220
     caacaggacc tgcataaacg ttgttaccgc catgaaacat tttttcagcc tttttggaat      5280
     ccctaaaaaa atagtttatg accaaggtgc ggaattttct ggcagtatat ttaaagattt      5340
     ctgtaatcaa tacgacatcc aatgtcatat aacttccttc cagcagtcat ccagcaacta      5400
     tccagtagaa cgattacatt cgacactgac tgaaacctat agaataatca cagaattaaa      5460
     aaagaaaaat aagcagatta acaaacacga ggaaactctt tcggaaacac ttctcacgta      5520
     caataacgct atacattcat ctacaaaata cacacctttt gaacttttta ctggacgcac      5580
     acctatattt gaacaaacaa ttaaatacga cactaatcat gaatatttac aaaaattaaa      5640
     tttttttcaa tcaaaattat accaagaggt gaaagagatt ttacataaaa atactaaaag      5700
     caaacttgat aaacttaacg aaactcggaa atccgcagcc cccttatcaa ctaatgaaag      5760
     catatttcga aaagaaaacc gtagaaataa gttaacgcca agattttcta aacataaagt      5820
     cttacgagat aatggtaaca catttatcac cacacgcttg caaaaaatcc ataaatctaa      5880
     aataaggcga acaacaaaat aataattagt ataatctttt ttttttacat atgtcattca      5940
     ttgtacccaa acgcattgta aacaatatac agtatttgtt taacatttgg aaaaaaaaaa      6000
     ttttttgtaa cataaaatgc tacaaaaaca actagaaaaa ttaagctttc agcataccat      6060
     taaatccttt tgtgttgcgt tggaatcaca agtggacaac gacggtccga tgaacaagcc      6120
     caagtcacaa ggaaaatcag cggcatccac cccgacagcc ccattctaaa tgcatttgct      6180
     tcattttggg gagggaggag ttaccaaccc aacaccc                               6217
//
ID   Gypsy-22_DWil-LTR repbase;    DNA;    INV; 370 BP.
XX
AC   scaffold_181130;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DWil_;
KW   Gypsy-22_DWil-I; Gypsy-22_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-370
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181130; Positions  406878  406509.
XX
SQ   Sequence 370 BP; 165 A; 78 C; 39 G; 88 T; 0 other;
     tggtcactaa attggagacg tggcatcgac tcttttctgt tcccagaacg attgataatt        60
     tatatatgat gatcatacct acacaaaaca tacatacaca aaacatacat acataaaaca       120
     tacatacata tgatacataa aacatacata cataaaacat acatacataa aacatacata       180
     cataaaacat acatacacac atgcattaat tcgattgtaa cagacacaca aagatagaca       240
     aaaggtagag aatccaaaaa cattatgaat aaaaagacac ttctgtttta acatctgaat       300
     cgaatagacg tttgagttac tcggggaaaa accaaataca cacacatctc acacaccctc       360
     attcaaacca                                                              370
//
ID   Gypsy-22_DY-I repbase;    DNA;    INV; 6410 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DY_;
KW   Gypsy-22_DY-LTR; Gypsy-22_DY-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6410
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1832-1832 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4683-5192] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           928..2325
FT                 /product="Gypsy-22_DY-I_1p"
FT                 /translation="MPLTRSPETVHEEERAAHCFICTNPIEYTAQLLTTNC
FT                 DHTFHLACFNTTNRKVCPVCRAPIELTESGDNSLAEKPSGSQNLNQQLEAN
FT                 TMMDSQVGDPNIGKLVRAITDALSSAAHRQSEEIRDMSDRQTRLISRAIEA
FT                 GFQRMSLPSRTSERNRREQVPTEISPNQSGNINTEASFHSEAFDLRPDRIS
FT                 QIMTNWKLRYTGKGFLSVDDFIYRAEALTRQTLDGNFNLLARYSSNLFEGG
FT                 AAEWFWRYHKTVPIIIWTDLCVALRTQFKDARTDRDIQASIDQRKQKHNES
FT                 FDEYYQAIAAMADHLSQPMSESYMLGVLRSNLLTEIQHELLHIPIHSVADL
FT                 RQAVRRHEIFKQQLSKPHNTFSRPPPKRQVNEIEPQFKDQLDSEDPEVEEI
FT                 AAIDLKCWNCDMTGHRYHDCTRERRVFCYGCGKPDTYRPNCSHCQSSKNWK
FT                 GRAPTNSARKTYLSSEPKVDQ"
FT   CDS           2532..5561
FT                 /product="Gypsy-22_DY-I_2p"
FT                 /translation="MIGNTLDVRPYAEVSILGRTVSGLLDSGASISCIGGT
FT                 FADDLLNDQSQGLKPFKCSVKTADGKSQRVMGKLTTEIFFRNKSEEINLYI
FT                 VPSLSQNLYLGIDFWIRFDLLPSFNSNLAVSAVEDSMLRPLTAKQQKQLKD
FT                 SIALFPSFSETGLGRTSVLSHCIDVENSKPIKQRHYPVSPAIEKMMYAELD
FT                 RMLSLGVIEESNSAWSSPVVLVRKPGKVRLCLDSRKVNAVTVKDAYPMPFI
FT                 DGILSRLPKAEFISSLDLKDAFWQIPLEPKSRDKTAFTVPGRPLYQYTVMP
FT                 FGLCNAPQTMSKLMDKIVPASLKREVFVYLDDLLIVSESFEKHIQTLKELA
FT                 VNISKAGLTINVQKSKFCLKEIQYLGHVIGHGTIATDPEKLSAIVDFPEPR
FT                 SVKQLRRFLGMTGWYHKFIKNYATVASPLTDALRQKRKFEWSAEAQKAFEA
FT                 LKQHMCEAPVLHSPNFDEPFFIHCDASHTGIGGVLVQLSTEGDEVPIAFMS
FT                 RKLNQCQRNYSVTEKECLAAIMSIKKFRAYVEGHKFTVVTDHASLKWLMSQ
FT                 TDLSSRLARWALKLQGFSFEIKHRKGTQNVVPDVLSRAFTQDLSALELDRF
FT                 IDLQSDHFRSKDYEELKLKVQQNQSLLPDVKVMDSLLYRRTEHAAGERIAD
FT                 DMVWKLWIPKELVPMVLQISHDHPLASHCGINKTLERVRRYFFWPNLVADV
FT                 KAHVNGCEICKCSKHPNYSLKPNLSKTGETQRFFQKLYVDFLGPYPRSRSG
FT                 HIGVFVVLDHFTKFPFLKPIKKFTAEAILKYVEEELLHCFGIPEVIVSDNG
FT                 VQFKSHAFNRLLDKYNIRHSYTAIYAPQGNPSERVNRSVIAAIKSYIHPNQ
FT                 TNWDEHLSKICCSLRSSFHTAVNTSPYRLTFGQHMVTNGSTYRLLRNLGVL
FT                 EDRSVRFQRDDSFDLERSKAVATMRKQHQRNENSYNLRSREVSFVPGQEVY
FT                 RRNFCQSNFAKGFNAKLAPAFLKARIKRKLGNSYYDVEDTQGRYVGKFHVK
FT                 DLKQ"
XX
SQ   Sequence 6410 BP; 2003 A; 1300 C; 1358 G; 1746 T; 3 other;
     gaataattaa tggcgcccaa acgtgtcggc caaccggcaa gccgagtaat atatgctaac        60
     tggccatctc cattgaacaa cttttggaaa tcagcagaag cttaggccaa ctaatccctc       120
     acgcacactc ttttctaaaa tctctatctt ttgtcttgtg aaaaataaaa aaataaacaa       180
     acatgctatt gcaaatggac caggtggacg aaagtatctt tcaatagatt tttggccctg       240
     gctctgcaaa gtatacatat ttaaacctag actctaagag tttagactag cgaatgattt       300
     caagtaatcg cgcttcgacc aaagagtcta aggttaattg tattttagtc gagataaatg       360
     ggaaagtcga agtaaaggat ttctggatgc agtgtaagcc ttttcctttc ttaaatttgc       420
     ccgacttcta tacccttcta catatctaat aatttagcta ttgaatacga ttagtttcaa       480
     aataaccaac ggagctagct aaattctctg tgttgattgt ttttcttatt atactttagg       540
     ttctgcgtat attgaattct tttgtcgtat attactacaa atgttatcta tacccaaact       600
     taaaaggaat cttatctgat tcaagatatc taataatttt gctattgaat acgattagtt       660
     tcaaaataac caacgaagct agctaaattt tttgtgttga ttgttttcct tattatattt       720
     tatgttctgt gtatactgaa ctcttttgtg gtatattact acaaatgtgt tctataccaa       780
     acataaaatt aatcctatct tacagaactg aataaaacaa gtttataccc tttctgaagc       840
     aagtaatagc atgaccccgg tatttaattg aataatactt accacacctt ttgagttaaa       900
     ttaaattatt atagttttct taaaaccatg cctttaacac gcagcccaga gacagtacat       960
     gaggaagaaa gagctgcaca ttgcttcata tgtactaacc ccattgagta tacagcacag      1020
     ctgctaacaa caaattgtga tcatacgttc cacctggcgt gttttaatac gacaaaccgc      1080
     aaggtgtgtc ccgtctgtag agctcccatt gaattgacag aatcgggaga caatagcctg      1140
     gcagaaaaac catcaggttc ccaaaatcta aaccaacagt tagaagcaaa tacaatgatg      1200
     gattcgcaag tgggtgatcc aaatataggt aaactagttc gggctataac agacgcgttg      1260
     agttccgctg cacataggca gtcagaagaa ataagggata tgtcagacag gcaaacacga      1320
     cttatttcaa gggcaattga ggcaggcttc caaagaatgt ctctaccgag tcggacaagc      1380
     gaaagaaaca ggagagagca agttccgaca gaaatttccc ctaatcaatc cggaaatata      1440
     aacaccgaag ccagttttca ttcagaagca tttgatctcc ggccagatcg tattagccaa      1500
     attatgacta attggaaatt gagatatacg ggtaagggtt tcctgtcagt tgacgatttc      1560
     atttatcgag cagaagcgtt gactagacaa acactggacg ggaattttaa cttgctggcc      1620
     cgatattcga gcaacttgtt tgaaggtggg gcagcagagt ggttttggag gtatcataag      1680
     acagtaccaa taataatttg gaccgacttg tgcgtggctt taaggacaca gtttaaagat      1740
     gcacgtacgg atagagatat ccaagcctca attgatcagc gtaaacagaa gcacaatgag      1800
     tcgtttgatg aatattatca ggcaatcgcg gcaatggctg accatttatc gcagccaatg      1860
     tcggaatcct atatgctagg ggtcttaagg tcaaaccttt tgacggaaat acagcatgag      1920
     ctgcttcata ttcccatcca cagcgtggct gacctgcgcc aagcggtgcg cagacatgag      1980
     attttcaagc agcaattgtc taagccacat aataccttca gtcgaccgcc gcccaaaaga      2040
     caggtgaacg aaatagaacc gcaatttaag gatcaactag atagtgaaga tccagaagtt      2100
     gaagaaattg cggccataga tttaaaatgt tggaactgtg acatgacagg gcatagatac      2160
     catgattgta cgagggaacg ccgcgttttc tgctatggtt gcggaaaacc tgatacctac      2220
     cgcccaaatt gcagtcattg tcagtcttca aaaaactgga aaggccgagc accaacaaac      2280
     agtgctcgca aaacttatct gtcgtccgaa ccgaaagtag accaataagt cacgaaccag      2340
     ttcttcttat cgctgacatt cctaagccaa caaatcgtac acatttcccg gaagtatcaa      2400
     taggtaacca acattatagt attaaagaaa aggtcccagc cataaatgaa aaatcaaaac      2460
     aatgcaaacc agaccgtggc cgtcattatt tcgagaagcg taagcaagaa cgcgttacgg      2520
     tgctttcagc catgattgga aatacgctag acgtacgacc atatgcagaa gtatctattt      2580
     tgggcagaac tgttagtggg ttgctagact ctggagcatc tattagttgt ataggcggaa      2640
     cctttgcaga cgatctctta aatgaccaaa gccaagggct caaacctttt aaatgttcag      2700
     taaaaactgc agatggaaag tcccagcggg ttatgggcaa gctgaccaca gaaatattct      2760
     ttaggaacaa gtcggaggaa attaatttgt atatcgttcc atcgttgtct caaaatcttt      2820
     acctaggaat tgatttctgg atcaggtttg atttgctacc ttcgttcaac tctaatcttg      2880
     ctgtttcagc agtagaagat tctatgctgc gcccgttaac tgcgaagcag caaaaacaac      2940
     taaaagattc cattgcacta tttccgtcat tttctgaaac tggattgggt cgcacttccg      3000
     ttcttagtca ttgcattgat gtggaaaatt caaaaccaat aaagcagagg cattatccag      3060
     tgtctcccgc tattgaaaaa atgatgtacg cagagcttga ccgcatgttg tcgttaggag      3120
     tgatcgagga atccaacagt gcatggtcct ctcctgtagt ccttgtacgt aagccaggaa      3180
     aagtccgcct ttgtttggat agcaggaagg taaatgcagt aacggttaag gatgcatacc      3240
     ctatgccgtt tattgatggt atactaagcc gtttgccaaa agctgagttc atttctagct      3300
     tagacttaaa ggacgcgttt tggcaaatcc cgcttgaacc aaaatcgagg gataagactg      3360
     cgtttacggt cccaggccgc cctctctatc aatatactgt catgccattt gggctctgca      3420
     atgcacctca gactatgtcc aaactgatgg acaaaattgt tccggccagt ttgaaaagag      3480
     aagtctttgt ttatctagat gatctattaa tagtgtccga atctttcgag aagcatattc      3540
     aaacgttaaa agaacttgca gtgaacatct ccaaggccgg tctcacgatt aatgtccaga      3600
     aaagcaagtt ctgtttaaag gaaattcaat atttaggcca tgttatcgga catggaacca      3660
     tcgcgacgga tccagagaaa ctgtcggcca ttgtagactt tccggaacct cgatcagtta      3720
     aacagcttcg cagatttttg ggcatgactg ggtggtacca taaattcatt aaaaactatg      3780
     ccaccgttgc ttcacccttg actgatgccc tcagacaaaa aaggaaattt gaatggtccg      3840
     cagaggcgca aaaggcgttt gaagctctga aacaacacat gtgcgaggca cctgtcttgc      3900
     atagcccaaa ttttgatgaa cccttcttta tacattgtga cgccagtcac actggaattg      3960
     gtggggtatt ggttcagtta agtactgaag gtgacgaagt accgatcgct tttatgtcgc      4020
     gaaaattaaa tcaatgccaa aggaattact ccgtcacgga aaaagaatgt ctggcagcaa      4080
     ttatgtctat aaagaaattt cgagcgtacg tggaaggcca taaattcacc gtagtcaccg      4140
     accatgcgtc attgaaatgg ctcatgtctc aaacggactt gagcagcaga ttggcgaggt      4200
     gggcactcaa gcttcagggg tttagttttg agatcaaaca cagaaaaggt actcagaacg      4260
     tcgttccaga tgtcctctct cgggcgttca cacaagacct ttccgcgttg gagttagatc      4320
     gatttattga cctgcaatct gaccacttta gaagcaagga ttatgaggaa ctaaaattaa      4380
     aagttcaaca gaatcagtct ttgcttccag acgtaaaagt tatggacagt cttttgtatc      4440
     gcaggacgga acatgcagct ggcgaaagaa tagcagatga tatggtttgg aaactgtgga      4500
     taccaaaaga attggttccc atggtactac aaatatcgca cgatcatccc ttagcttctc      4560
     actgtggtat caataagacc cttgaacgag tacgtaggta cttcttctgg cccaatctgg      4620
     ttgcggacgt taaggctcac gtgaatggtt gtgagatatg caaatgctcg aaacatccca      4680
     attatagtct taaaccaaac cttagcaaaa caggcgaaac gcaaagattt ttccagaaac      4740
     tgtatgtcga cttccttggt ccatacccgc gatctcggtc tggtcatata ggtgtttttg      4800
     tagtgctgga tcactttact aaatttcctt ttttaaagcc tatcaaaaag tttacggcag      4860
     aggcaattct aaagtacgtt gaagaagagt tactacactg ttttggcatt cctgaagtaa      4920
     tagtatctga taacggcgtt cagtttaaat cacatgcttt taaccgtctt ttagataaat      4980
     ataacatacg tcactcttat acggccattt acgcccctca aggtaatccg tcggaaagag      5040
     taaataggtc tgtgatcgct gcaattaagt cgtatataca tcccaatcag acaaactggg      5100
     atgaacactt aagcaagatt tgctgttccc tacggtctag tttccatacg gccgttaaca      5160
     cttcacccta taggttgacc ttcggacagc acatggttac caatggatca acgtataggc      5220
     ttctacgtaa tctcggggtg cttgaagacc gttcagttcg cttccagaga gatgatagtt      5280
     ttgatttgga acgaagcaag gcggtagcga ccatgaggaa gcagcatcaa agaaatgaaa      5340
     actcttataa tttaagaagc cgtgaagttt cattcgtccc cggtcaagag gtctacaggc      5400
     ggaatttctg tcaaagtaat tttgcaaagg ggttcaatgc taaacttgcc cctgcgtttc      5460
     taaaagcgcg tattaaaaga aaactcggca acagttacta cgacgtggag gatacacaag      5520
     gacgttatgt aggaaagttt catgtgaaag atctcaagca ataacatcat gaaattatag      5580
     ctcccagcgt ggatcccgct ttgtaggctt ttctttctct cctaagcgcg atcttgttgg      5640
     gggggttttg tagaagcgct ggtcgatgaa aagatacaca aagataaaaa gatacaaaga      5700
     gsgaaaataa atgtaggcct aaaagtaggc aatggttttg gaggatgtcc caactgtaag      5760
     caaaggcaag cgcaaaggta atcaaggtcc gtccacagat ttaaaataaa aagtcgcata      5820
     ataatgtaca aatactttgc gcgggtgcgg tcatagctag gacattcctc tgaaatgagc      5880
     atagggtgtg aattgtcaaa ggaattcggg atgtggaaat tccaaaaatt tattaccgat      5940
     tagctagttt atagcttaaa gtgggtaggg ctccgccttc atctcaggga tgatattcct      6000
     tgttccagtg ccacattgac actggagact aaaatggctt tggaattcgg gcctataaag      6060
     ctgcccttaa cccccaaatt cggcctattt gccgcttcac ctgccaacca gccacatcga      6120
     agtctctggg aaaatatttc tttttttttc gatcttcaga atagtatgca ttaacataat      6180
     attataatta acctatacgc gctgagatac gattkkaaaa ttcaaggaaa agtgaaaaga      6240
     aggtaaataa aaaaaaaggg ctttcaacta aaggtcagaa cggtgggatt taaggggtaa      6300
     ttgtttttgc aggccacaat tcaacttaga tcatcgcaaa tctccccacc ccgcagtacc      6360
     aaaaagcttg ctgctgagaa caaaaagaga gggagagggg aaggcaaacc                 6410
//
ID   Gypsy-22_DY-LTR repbase;    DNA;    INV; 1831 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DY_;
KW   Gypsy-22_DY-I; Gypsy-22_DY-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1831
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1833-1833 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1831 BP; 663 A; 283 C; 317 G; 568 T; 0 other;
     tggctcgtca gcaggtgctg agtagttgcc gaaaattcgt atggagagca tcgcggcttg        60
     gtcgcggcat cggtagctta cgaaaagagc tctctacgcc cggaaaatcc agagaaaaac       120
     ccataaggaa cgaagaatcg ggaaatgtgg gaaaatacct ttttttttgt gtgccatata       180
     aagtgaaaaa aaaaacataa ccccacaccg tgaacaaccc gcatgcaggc ggttgcataa       240
     cctatatata tatatatata tatatatttt cgtatatata tatatatgca tatatatgcg       300
     tataagttaa aattttgaaa tattgaagag tgaagtttgt ttgccaagga atggccgtat       360
     cgagaatagg ctagttatag ttttttattt tatttaaatt tttttttgtt gtagtatata       420
     taagtttttt ttgtagtggg aaattattga agtttggtga ggagagtatg ttcatgtgag       480
     agaatggtgt tctgtgtaaa tatgtgaagt taatcgaaac aaaaagagaa agagaaaaaa       540
     aaacagaaaa aaatatgata taaaaaaaaa atagaaaaaa atataaattg tgcgttaata       600
     ataaaatagt tgaaatataa gtaaagtaat gaagtgaatc ggtccagtga aacatatata       660
     aaagcgatga tgattgcgtg ctaacaaaag aaaatgaaaa ataattaaaa taaaaatttc       720
     gagaaaaatg aggggaaaat tatgtcgttg ccaggtgaaa tcaagtgatc aataataaag       780
     agaaaaaaag aaaaagtgat ctaaaagccc ctttacccct ccctatagat tcgccgaaag       840
     cgctttcgcc gtctggatat ggagaggtaa gtctgcacaa caattgttct aaaatccaaa       900
     agcaaaacaa agaaaatgta aaagcatgta gaaatcgacg caaagtcaac tcgatgtctc       960
     tcagtaaagt aaatatcatg tcgattctca atcaactaat tatttttcaa tgcttgtaat      1020
     ttaacaccgt ctgagctgcc atatattcac catcgaattc ttttttttat taaaacatgc      1080
     aaggaaaact ttacttttgc cttccccatc tttattatac gcatttattt tatttttaat      1140
     acatattata tactatttta tattttttta ttatacctat tctaaatata tacatatcca      1200
     tacctataca tacatataca tattatctac ccacagcacc attctcatat ctctcacata      1260
     aaaaaaaaaa aaaaaataat aaataagctc atgttagaag ttatgattta ggccaatttt      1320
     aaatggagaa attaaatgaa aaaaatctat gaataaaatg ttttgaagtt gaaatgattt      1380
     gctaattttt ctgccgtggg ggtcatgctg aacctaaaaa tgatagggtg ttaaaacgtg      1440
     aacttgaaac tagggaccat ttgaaattat ttattttttc ttgtacggaa taaaatggtc      1500
     aaggttgggt gggctaatac cagttgctat aaaaacagcc atagcaacaa tttttcaagt      1560
     cgccttgttt cataaattct tttctgtcta tcgccccaat gtttcctttt gttttttttg      1620
     ttcttttcgg atctgagtgc ccttttccta taattcccga agcacgcgaa atttaataat      1680
     tctttttgca tacgacgcca gcactgcgag taatacactt agaaaaaccc acccatcgtc      1740
     ccgaatctga gcaaggccgg aagcaacgcg tgcggtatta cctcgtatgt ccatcagctg      1800
     gtccgaataa taataacagt gatatgctac a                                     1831
//
ID   Gypsy-22_DYa-I repbase;    DNA;    INV; 4420 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DYa_;
KW   Gypsy-22_DYa-LTR; Gypsy-22_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4420
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 3241163 3236744.
XX
CC   Positions [1493-1996] - Reverse transcriptase
CC   Positions [3109-3582] - Integrase core
CC   'TATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..2359
FT                 /product="Gypsy-22_DYa-I_2p"
FT                 /translation="MHATRAPASDEKALHVTLPKFCADSAGADPSAWCTTV
FT                 DLIFADNALVGSALVLALSKALEGSASQWLSQICFAGITWSQFKELRFVGI
FT                 ETTAAILMNVLNGRPKPGESFAQYGSRIVTLLLSKWKAKDLEEIAVSVAVA
FT                 HMAQIDNNLLRWVFTTNVFTRNELQQQLQAYAFKKRNNEDDFAPEKKKSRM
FT                 QSQTKCHFCAKVGHKFAECRARMEGTSNTKGRSHSGSNTSGSRDRSNIRCF
FT                 KCDEMGHVASVCPKGNNKYIEKRVDLCKLSEPSGLFFQSGEPFPFFFDSGA
FT                 ECSLVKEKLSNKLAGKRSNNLVILRGIGDNIVKSHLQILSTVQMSKFNLEI
FT                 LFHVVMDNYLKHDIMIGQDILKLGFGVMIESDKFSIYKSKIINAVQNDAPE
FT                 NTLEMLFDTNTDLSDNDKSKLRNILEKYADSFVIGIPNKRVTTGALEIQRR
FT                 PYRLSADEKLLVREKIEQMLESNVIRPSSSPFASPMLLVKKKDGSDRLCID
FT                 FRELNLNTISDKFPLPLISDQIDRLRGGKYFSILDMASGFYQIPIHPDSIE
FT                 KTAFVTTEGQYEFLAMPFGLKNASSIFQRAIVQALGDLAYSYAVVYIDDVL
FT                 VVANTKEEAYERLNTVLKALSEAGFSFNIKKCNFLCTGIEYLGFHIKDGEI
FT                 KPNPRKIEALSVLSQPTSTTQLRQFIGLASYFRQFVPRFSEKMKPLYQLTS
FT                 KLNAFVWKEEHEKIRQDNIKVLTCDPVYSTLSFQLNCILMPVQMAMGLCSC
FT                 IK"
FT   CDS           3010..4053
FT                 /product="Gypsy-22_DYa-I_1p"
FT                 /translation="MTKYVRKVVENCMTCKLSKPSSGKMQIEMHPIPKIDI
FT                 PWHTVHVDISGKLSGKNDLKEYIIVQIDAFTKFVHLYHTLNLDSENCIKAI
FT                 KSSMSFFGVPSRIIADQGRSFASNKFREFCSTNRIKLHLIATGASRANGQV
FT                 ERVMSTLKTMLTAVETSQRSWQDALAEIQLAMNCTTNRVTKASALELLIGR
FT                 EARPFGLLPVDVEESVVDREQMRAQAKENMQKNAQYDKQRFDKNKAKIVPY
FT                 KEGDHVLLKSEERHQTKLDPKFKGPFQVINVLDGDRYELKSLVNKRTYKYS
FT                 HEWLRALPDRRLTTECNGDTQEGEKLKDVTSERASVSQEGKDLINGTNEMA
FT                 CVQKE"
XX
SQ   Sequence 4420 BP; 1458 A; 763 C; 1037 G; 1162 T; 0 other;
     tcagaagtgg gatcgccttc gccacaagag cccagcgctg atcagtatat ggctgcgttg        60
     gaaacacaaa accgtaacct catggaaata ataaaaaaca atgcacgcca cgagagcacc       120
     ggcgtcagat gaaaaggctt tgcacgtcac actgccaaaa ttctgcgctg atagcgctgg       180
     agcggatcca tctgcatggt gcaccacggt ggacttaatc tttgcagata atgcgcttgt       240
     aggcagtgcg ctcgtattag cgttgagcaa agcgctagaa ggcagtgcgt cgcaatggct       300
     gtcgcagata tgcttcgctg gaatcacatg gtcgcagttc aaggaactgc gattcgttgg       360
     gattgagacg acggctgcca ttctcatgaa cgttttgaat ggacgtccaa aacctggaga       420
     gagctttgcc cagtatggaa gtcgcattgt caccttgttg ctgtctaagt ggaaggccaa       480
     ggatctggag gagattgcgg tatcggtagc ggtggctcac atggcacaaa tcgataataa       540
     tttgttgcgt tgggtgttta cgacaaatgt gtttacgcgc aatgagcttc aacaacagct       600
     gcaagcttac gccttcaaga aacgtaacaa cgaagatgat tttgccccag aaaagaagaa       660
     gtcgaggatg cagtcgcaga ctaagtgcca tttttgtgca aaagttggcc acaaattcgc       720
     cgaatgccgc gctcgaatgg aaggtacatc aaacaccaaa ggaagaagcc acagcggaag       780
     caacacgtct gggtcaagag atcgttcgaa cataagatgt tttaaatgcg acgaaatggg       840
     acacgtggct tctgtatgtc ccaaaggcaa caacaaatac atcgaaaagc gagttgactt       900
     atgcaaatta agcgagccaa gtggattatt ctttcaatcg ggtgagccct ttccattctt       960
     cttcgattcg ggagccgaat gttctttggt aaaagaaaaa ttaagcaaca aattagctgg      1020
     caagagaagt aataatctag ttattttaag aggaattggt gataatatag ttaagagcca      1080
     cttgcaaata ctgtcaacag tccaaatgtc aaaatttaat ttagaaattt tgtttcatgt      1140
     tgtaatggat aactatttaa agcacgacat aatgattggc caagacatat taaagcttgg      1200
     tttcggtgta atgattgaat ctgataaatt tagtatttac aaatccaaaa ttattaatgc      1260
     cgttcaaaat gatgcacctg agaacacctt ggaaatgctt tttgacacca atacagattt      1320
     aagtgataat gataaaagta aattaagaaa tatattggaa aagtatgccg atagttttgt      1380
     aattgggata ccaaataagc gtgtaaccac aggagcattg gaaattcaaa ggcgcccata      1440
     tcgactcagt gcagatgaga aactgttggt cagagaaaag atagaacaaa tgcttgaatc      1500
     taatgtaatt cgtcccagca gttctccatt tgcaagtcca atgttattag ttaagaagaa      1560
     ggacggcagt gataggttgt gtatcgattt tcgtgagcta aacttaaata cgatttctga      1620
     taagtttccg ttgccactga tttcggatca aatagatcgt ttgcggggtg gtaaatattt      1680
     ttccatctta gacatggcca gcggatttta tcaaataccg attcatccag attctataga      1740
     aaaaacagca tttgtgacta cagagggtca gtatgagttt cttgccatgc catttggtct      1800
     aaaaaatgcg tcgtctattt ttcaacgtgc cattgttcaa gctctggggg acttagccta      1860
     ttcttacgca gttgtttaca tagacgatgt gctagtagtt gcgaatacaa aggaggaagc      1920
     atatgagagg ttgaatacag tgttaaaagc attgtcagag gcagggttct cgtttaatat      1980
     aaaaaaatgt aattttcttt gtacaggaat agagtaccta ggattccata tcaaggatgg      2040
     agaaattaaa ccaaatcctc gtaagataga agctctttct gttttatctc agccaacctc      2100
     gacaacacag ttaaggcagt ttataggtct ggcatcgtat ttcagacaat ttgttccacg      2160
     attctcagag aagatgaaac cactgtatca gttaacctct aagctgaatg cttttgtttg      2220
     gaaggaggaa cacgagaaga tacggcagga taatatcaaa gtgcttacat gtgaccctgt      2280
     atattcgacc ctgagcttcc aattgaattg catactgatg ccagtgcaga tggctatggg      2340
     gctatgctca tgcataaaat agaagggaaa cacagagtag tcgaatatta tagcaaatgc      2400
     acgtcaatat cagaagccaa atatcactcg tatgagttag agacgctagc tgtctataat      2460
     gcagtaagac attttagaca ttatttgcac ggtagaaaat ttgttgtgta tactgattgc      2520
     aactcattga aagctagtcg tacaaaggct gagttgacac caagagtaca ccgctggtgg      2580
     gcgtacttac aggcatttga ttttattgta gaatatcgca agggcagcca aatggctcac      2640
     gtggattttt tatcacgaaa tccgattccc acagtttcaa atgccataag caaagtagat      2700
     gaagttcgtg ttgatctggc gacaataaca gataattggc tattagccga acagcaacga      2760
     gatgagggca taaataaaat cttggctcaa ttgaataatg aggacatggc ggcaaatatc      2820
     gataacacat atgaggttcg aactggatta ttatatcgca aaatacagcg taatggcaag      2880
     actcgttgcc taccagtaat ccctaaagcg tttaggtggt ccgtcattaa ccacgtacac      2940
     gaagctgtaa tgcatttggg gtggcagaaa actttagaca aagtctacga gaaatattag      3000
     tttgaacaca tgaccaaata tgtaagaaaa gttgttgaaa attgcatgac atgcaaactg      3060
     tccaagcctt catcaggtaa aatgcaaatt gaaatgcacc caattcccaa gattgacata      3120
     ccttggcata ccgtacacgt agatataagt gggaagctta gtggaaagaa cgatctaaag      3180
     gaatatatta tagttcagat agatgcattc actaagtttg ttcacttgta tcatactcta      3240
     aatcttgact cggaaaattg tattaaagct ataaagtcaa gtatgtcttt ctttggagtt      3300
     cccagtcgta ttatagcgga tcagggcaga agttttgcca gcaacaagtt ccgtgagttt      3360
     tgttcaacaa acaggattaa gttgcactta atagctacag gtgccagtag agcaaatggg      3420
     caggttgaaa gggtgatgag cactcttaag accatgctca ctgcggtgga aacgagtcag      3480
     cgatcatggc aagatgcatt ggcagaaatc caactagcca tgaattgcac cacaaatcga      3540
     gtcactaagg caagtgcctt ggaattgctg ataggaagag aagctaggcc ttttgggttg      3600
     ttgccagtcg atgtagaaga aagtgtagtc gatagagaac agatgagggc acaagccaaa      3660
     gaaaacatgc aaaagaatgc acagtatgat aaacaaaggt ttgataaaaa caaggcaaaa      3720
     atagttccgt ataaggaagg agatcatgtg ttactgaaaa gcgaggagcg gcatcaaacg      3780
     aagcttgacc ccaaatttaa gggcccattt caggtaatta atgtactaga tggtgatcga      3840
     tacgagttga agtcgttagt taataagcga acatacaaat attcgcatga atggctaaga      3900
     gctctaccag acagacgatt gacaacagaa tgtaatggtg acacccaaga gggagaaaag      3960
     ttgaaagatg tcactagtga acgtgcatct gtgtcccaag aggggaaaga tttgataaac      4020
     ggcacgaatg aaatggcgtg cgttcaaaaa gagtaatgac cgcactataa cagctatctc      4080
     gcagggacga gaagtgttat ggcgggggtc aagagattgg gtgtgagaga agacacgcca      4140
     atgttgatat gtgaaagtaa agttatggaa aatatgaata gtttgaagtt ttgatacgta      4200
     aattggagat gtctttataa ttaagtttgt aaaagaaaaa tcaatcatga gatgagttgt      4260
     caatcaatgt ttgtgtaagc ggctctataa gttaataaaa gtaagagaga aatacattga      4320
     agtttgttaa ataaattgga attaagttga tgaaatattg tgagtttgac ttgaatggtg      4380
     gattagacac acgaggacgt gtgataggtc aggaaggccg                            4420
//
ID   Gypsy-22_DYa-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_DYa_;
KW   Gypsy-22_DYa-I; Gypsy-22_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-350
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 3236743 3236394.
XX
SQ   Sequence 350 BP; 110 A; 58 C; 95 G; 87 T; 0 other;
     tgtcggagcg cgtccccagg aattttggga accgttacca tgatttcaca atctgatgaa        60
     attgtagcat tgtggtgaaa ttctgaaaag cactgcagca gaggcgcaga cggcctctgc       120
     agctgagtga ggtccgatct agttgtcata aatagtgtgt tagagaggga tgacaatata       180
     gtgaacgcca gtgttgtgta tagaccgaat agaatatgag gaggattaga aaaaggagaa       240
     aatcaggtca gtgaagttta gctggtggag taaatcggaa cttgctgtgc tgctatacca       300
     aaattgtgaa acttacgaat aaaatggata agactcccct attgccgaca                  350
//
ID   Gypsy-22_HeAr-I repbase;    DNA;    INV; 7445 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-7445
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5570-5570 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 7445 BP; 2602 A; 1712 C; 1070 G; 2061 T; 0 other;
     aatttggcgc agtcggtagg atcgcgtgtg cataaagacg aagttaaacg tgtagactcc        60
     aaacggtcaa aatcgcctag tgacgaagca cggtagctga aggcttttaa acaacttcgc       120
     cggaccttcg agtaatgaag ctcagcatcg cgaccagtat ttcactgtta tggtaagtgg       180
     cctaaaacgc atattgctct gctacctctc tatttcccat tgatcattca atcctaattc       240
     cttaaatctt atattttaca ttcaaaacct catatcacga tgccagacac taaagtctcc       300
     cccaactcag agatggacct agggactctc ttaaaactaa ttcctgactt tgacacctcg       360
     caaaattctc aagtatatag attcattcgg tcgtgtgact ccgcgtttaa ccttgcttca       420
     gtacatcaac agacagttct cttaacgtac gccttaaata agctcactgg accaggttca       480
     tcagacgtcc attctaaaca attttttaaa tggtgcgacc tcaaacagtt tcttatccag       540
     aaattctccc aaacaaaaac gctagctcac ttaaatctag aactacaatc ctacttccaa       600
     aagcctcaag aaagcatcac agaattcttc cttcgtgttg atttatgtag aagcaaaatt       660
     atagaaaaac taacggccga aatcatagat tctacgttag agggtcgtaa agctactacc       720
     gaagagacgg ctctcaatgt atttgtaaac ggtctaagtt cggacatagg gatgatgctt       780
     cgcgttcgtt cttttgaaag cctattggat gcgggaaatt tcgcaattca agaagaaaaa       840
     taagaaacat gaacaaagcc agacaagttt tatataatat ccctagcagt cagattaaaa       900
     accaatcggt acaaccaaaa gccattccac aatttagaaa ctcacctaag caatgtaatt       960
     attgcaaaaa aatgggtcat ctgatttcgg aatgccgaaa aagagaatac aacaatagtt      1020
     tcaaaaatca aataccacaa aatcaacgcg cagcagttcc atccgcgaaa ataaataatt      1080
     taaactcaga agcggccgag gtgttgggca tgccttcggg aaccgcttca gcccactctt      1140
     acaatgtcca gacaacaata ccgagtctcg aaacactaca aattcagtaa ttaccaactc      1200
     cgaaaaacat acttcctctt atccagtcca tcggggacaa tttcgtgacg ctagcactca      1260
     aactacaacc acgaaagaag tatcggttca aacacaatta catcccaaat ctatttcaaa      1320
     ctcaaattct aattctattt ctaaatccaa atctaaatct atttcaaact caaattctaa      1380
     ttctatgtct aaatccaaat ctaaatctaa ttcaaactca aattctaatt ctatgtctaa      1440
     atccaaatct aaatctatgc caaactcaaa tactaattct atgtcaaaat cagattctaa      1500
     agctatgtat actgaaccca ttactatctc tacgctaaac gtacctccag aaaatcttct      1560
     acattgccaa ttccacgttg aaggtaaacc ggtaacatta cttatcgata caggagccgc      1620
     tatatccgtc cttaataagg aacatattgg tagtgcccct ctagaccaat cgtgcgtcgt      1680
     atcgattgta ggtatatctg gtaaccaatc ttctattcaa agcttcggta aagctcaaat      1740
     ctccctagat catttcccga aattcaactt tcatatagca aacctcaaca ttaaagcaga      1800
     tggtatcctg ggcaatgact tcatgagcaa gttcaatgcc aatatctacg tacaatcaaa      1860
     aaccatgcgt atacgagatc gtacttacaa attatttcat attgaagaaa aaccaaccga      1920
     acccgtagat aacaaacagt tcataggtcg acgatctgaa actgttatca catgttgtac      1980
     taatgatatt caaaacggac ccgccttaat cgaaaaacaa accatttgcg acgatgtcac      2040
     tattcctaac gccttagtca cagtaaaaga taacaaattc ctaattactt gtgtaaattc      2100
     cggtaacaat gataaacttg tgttaatacc tagagttcat gcatcagaac tagtcgcaat      2160
     agaatcttca aataatattc caataaattc aacgaataca catacgttta acgacaaacg      2220
     aaacaaagta gacaaactca ttcgcagaga tcacctcaat gaagaagaaa atcaatctct      2280
     aaataaaatt gtcatggatt tttcagacat cttcatcaca gaaaacgaac ctttgacatt      2340
     cacaaaccac accaaacaca caatccccac tacatcagac acgccaatta acacaaagac      2400
     ttatcgattt ccgtatgtgc atcaacaaga agtaaaatca caagtccaaa agatgctaga      2460
     tcaaaatatt attcaaccaa gttcatctcc ttggagtagc ccaatctggg tagtccccaa      2520
     gaaactagac gcgtcaggga aacaaaaatg gcgtatagtc atcgactatc gcaaacttaa      2580
     cgatatcact ataggagaca gttatccttt gcccaacata actgacattc tagacaagct      2640
     gggccattcc atttacttca ctaccttaga tcttgcctcg ggattccacc aaattgaact      2700
     tgaccctaaa gacatcccga aaacagcctt taacacacca tatggacatt acgagttcct      2760
     tagaatgcca ttcggtctta aaaatgcccc tgctacattt caacgtgcta tggatagtgt      2820
     cctccaaggt ttacaaggtg aacgttgttt tgtctaccta gatgacatag taatattcgc      2880
     atccagtctc caggaacacg aacagaaact tactgaagtc ttcaaccgac tcaggaaaaa      2940
     cggtctgaaa gtccaacctg ataaatgcga atttatgcgg aaagaagtag cttatttggg      3000
     acatattatt tctagtgaag gtgtcaagcc aaatccagac aaagtcagag cggtcagaga      3060
     atttccagtt cctaaatctt gcaaagacat aaaatcattt ctaggccttg caggttatta      3120
     caggcgcttt atagcaaact tcagtcggat aacaaaacct ttgaccggac tcctgaagaa      3180
     agacgtacct ttcatttggg gtgaatccca acaacgcgct ttcgatactt gcaaaaatat      3240
     tctcactaca tcccctatat tacaatatcc agattttagt aaagaattcg ttctaacaac      3300
     agatgcctcg attcacgcta taggtgctat tctctcacaa ggtgaagtcg gtaaagactt      3360
     acccatagca tatgcttcac gtacactcaa caaagctgaa tctaattact ctacaataga      3420
     acgcgaactc cttgcaatcg tatgggctgt aaaacacttc cgtccttact tattcggccg      3480
     aaaattcaag atcgttaccg atcataaacc tttaacatgg cttttctcca tcaaagaccc      3540
     aggtagtcgt ctcgtccgct ggagattaaa actagaggag tatgactacg aaattattta      3600
     caaagcagga aaaattaata caaatgcaga tgcattatca cgcccaccaa taatgaactc      3660
     caatatcgta gatctatctt cagacgatcc accgtcttcc gattctactg attatctaca      3720
     aatgaattac gaacatttta catctcaaga tgtttctttc aacagtccga aattaaaaat      3780
     atctcctgat aatctcttag atccacgaaa taaaaatgta tttgtcccca tatcttgtca      3840
     actctcagat aagaataata ttttcaatga agcaattgaa tcttgctctc agacaaaacc      3900
     ttatttagaa aaacctaaat ctctatacga tgtcgatctc cttatttcag ataaaaatca      3960
     aaacttatac ttctgtccta caagacctac acattttgat ccttgggatt ccgaaagtta      4020
     cttcaaatca ctattatcat gtctacaaca taacaaaata gaatctcttt ttgtacctga      4080
     tctacaaaac gatctcacct gtaaaatgaa aggcaacgaa cagttacgca ttacatcata      4140
     tttagccgaa atgtataatt gtgatattac aatctgtaaa aacaatataa aatatccaaa      4200
     acctgaggaa attcctcaaa tactgaagac ctaccatgac gaacctctct caggacatcg      4260
     cggtatctta gaaactaaca gaaaaatacg tgacaacttc ttttggaaag gcatgacaaa      4320
     cgatatcaaa acttacatcg attcatgtgt tacttgccag cgtaataaaa tacaacgaaa      4380
     aaactttcaa gctcctatga taattacatc acaatcaact gaaccattcg aacgagtgtc      4440
     tatggacctt gtctcttatt cagacattag cgataacaat aataaatatg ttttaactct      4500
     tcaagatgac ctgactcgat tcgtacaagc ctatcctatt cccgataaag aagccgtaac      4560
     tgtggctaaa gaattacttt atttttgtca acattacggt gttcctaaaa gatttcattc      4620
     cgatcagggc actgaattca tgaataatgt tttaaaacaa ttaacaaaat ttctcggttc      4680
     caaccatact ttcaatactg cgtatcatcc ccaaacaaat ggcgctctcg aaagattcca      4740
     cgctacctta cgtgatcaca tacgaatgta tcacagtcgt cgacttaaaa ctgggacaaa      4800
     attatacctt ttgccattat gtgtcataat acctcagtta ataattccac taactacaca      4860
     cctcatgaat tattatttgg ttataagcca cgtccatttt ataatattaa aactattccc      4920
     gactatacag cctgtgatta tctaaaagat ttaaacgaac gattgagaat cgctcgagac      4980
     tcagccctta aaaacttgca ggctatgaaa gaaaaagcta aagatcgata tgatagtcag      5040
     attaaaaact ttgcgcaata tcaaataggt aataaagtta tgttaaaagt tcctaatcca      5100
     aacaatttgg accctaaatg ggaaggtcct tatcaagtta tacgtgttgg tttcaatcat      5160
     aactacgtaa ttcagaaagc caatcgtaac caactagtgc atgcaaatag gctcagacca      5220
     taccatttgc atgaaacctt agtttagtat taataagaat aagcagaaaa aaaaatctat      5280
     tttagtataa ttcattaaat ttagattcta gttttatttt actcttacag ggtcagctct      5340
     acagcggctc aatcccctaa ctcctataac tttaacgata ttatacagaa tccttatact      5400
     agtttcatca tttgctcaat tctaaaatta ttgttataca ttcttctcta caagttttac      5460
     atctatatta agaactacat tataagtaaa cgtaaggtta attcgcaatc taacataaat      5520
     caaattccgt cgctttcagg gcaaccacgg gaatcgttgc caatctaact caaccgctgc      5580
     ctacgcatgc cggattattt tataaagaag aaggctctat caccatatct gatgactcat      5640
     ggaaactcat cgtttaccgt gatcttaaac cactatttat tgctcatgaa tccttaaaac      5700
     gtctagcttc tagattcgaa caattttatg taaaatatcc cgcttttcct aatgttctat      5760
     ccactaaatc gtatcttaag actaacctcg ataaaataga taacagactc tccgaactaa      5820
     atatttactt aggtaagaat tctagacaga aaagagaact tttagatggg cttagttcgt      5880
     tgttgaaata cctcatcggc actccagatg ccaaagacgc gaaacattat gacgaatgta      5940
     tcgatatgct tgagaaacgt gaactcgatc tcacctcttt aatgcagaaa caaatccaaa      6000
     taacttctag tactattagg aatttcaacg aaacgatatt taaaatctct tatgatgaac      6060
     aggtcataaa tgaaaacatt gatcgtttaa atcaatacct taacagtact tctaaaacta      6120
     ttttcgattt aaaaattacg gaagatatct catcaatctc aattttaata ctagaatcgg      6180
     ttaccaatct cgaaaacgag attgacgatt gcctctcgag tattttattt gcaaaatcaa      6240
     acataattca tcattcaatc atttctctta ataaattata taaaaatctt ctcttatcca      6300
     accacgctag atctaataaa caattagtta gtcctgttac catcgacaac atcaataaaa      6360
     tcctagattc gtctcaactc tctgcttacg tgtactcaaa cagattagtt tatatattag      6420
     atttcccact cattaaacct gaatctttta aactctacca tatctattca atccctatcc      6480
     aacatcccaa ttcctctctc tataccacca tcctaccaga gcataagtat ttggccacaa      6540
     accctagtgg tgaacactac gtatccacga gctccttgga caactgcaag acatacgctg      6600
     aaagaagaag cgtgtgccga gatatcatcg tctacaactc tgatacacgc cctgtttgtg      6660
     agctacaaat cctactcagt gtctcgaacg acatccccac catctgtaca actacaacct      6720
     tcgctgcaca aatcaacaca ttccaacgct tggaaaacaa cagatggctc tacatcctca      6780
     gtaacgcaac acagtgcatc cttcaatgca acaatcaagt ctcgcatcac aacatctacg      6840
     gatcaggaat tattaccctt gaaacaaact gtaaacttca cacgggatac agtacgctgt      6900
     cagcacacca aagcaaggaa gacaacatca cattcccgat tatagttcct gacatcagaa      6960
     ctgaagattg cttcgaagaa actgaagatc atcattttcc aaaccttcta cctatctcaa      7020
     tcaacgaaac tccactagac tcactcaaca acctcaaaca tcaactagat aaacataacg      7080
     aagaaatcca gcagatgaaa cagaaaccct tcatccaacg acaccagaat agattttctt      7140
     ggttctactt cacaacagga accctcatgc tatcattttt gatgtataaa ttattcagaa      7200
     gatgtctaag agttgcaaat aactttgatc gcaataacga tgacaaccac tgcatccaga      7260
     tcttcaacaa ctgcttcgga agaacatcac gacgacatcg atcaacacgt cacattcaga      7320
     acatcccgat gaccacgttg aaccaaacca caacgtcatg tatctccgaa gacgacagcg      7380
     acgacaattc ctccactcca aaaagattcg gcgctaacgc ccaatcttta ttctaggcgg      7440
     ggagg                                                                  7445
//
ID   Gypsy-22_HeAr-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-399
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5600-5600 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 399 BP; 119 A; 62 C; 36 G; 182 T; 0 other;
     tgttatataa tataacattc cttcctatgt gcttatttac cttttcttct catataccta        60
     cttgtacttt atttttacat tgtcaatatt gtttacttta tttatctttc aatctttgaa       120
     ctctatttta ctaacgattt gtataatgta ttattaatat ctcatgtacc tcatttaggt       180
     tacaactatt tactgttctc aaaggatgtt attaagtaat tagccaatag tgattattta       240
     agttgttatt tacttttcca ttgatttctt catataaata cgtgccctta agttaaagta       300
     agtcagttct attccgacat tctattgtta aacttgtaat caaatcttaa ataaaataat       360
     attttatttt aaagtcgttt ttgccactat cacataaca                              399
//
ID   Gypsy-22_LH-I repbase;    DNA;    INV; 4500 BP.
XX
AC   ADOQ01013083;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_LH_;
KW   Gypsy-22_LH-LTR; Gypsy-22_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4500
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01013083; Positions     561    5060.
XX
CC   Positions [3433-3945] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1219..3390,3394..4347)
FT                 /product="Gypsy-22_LH-I_1p"
FT                 /translation="MLVGRRGDFGKLNTPSRSEAIAQGEPKHNRLHIRDRK
FT                 SGHRFLIDTGAEISVLAASLTQRKTPSELKLYAANNTRIDTFGERRLTLDI
FT                 GLRRAITWNFCLAAVPFSIIGADLLKHYGLDVSLSRRCLFDSTTKLYTTGS
FT                 ISTVPDLCLSTVDHSNNFAKILTEFQEITGVLQQATQKTSDVEHHILTNGP
FT                 PTAERPRRLAPDKLKAAKAEFKRLMELGICRPSSSPWASPIHLVRKKSGEW
FT                 RICGDYRRLNAMTIPDKYPVPHLHDFSANLQGKKIFSSLDLFRAYHQIPVA
FT                 KDDIQKTAVITPFGLFEYVSMTFGLRNAAQTFQRYIHRALKDLDFAFVYID
FT                 DILIASPSVEEHKEHLRTVFRRLKEFGLFINPTKCVFGVREITFLGHLVNS
FT                 QGCKPTIEKVAAIQNFPKPRTVVELRRFLGTLNFYRRSLPHAASAQAPLHV
FT                 YLTDSRKNDKREIAWSPEAEIAFLKAKQDLANAALLIHPSDTAETRIVTDA
FT                 SDTAVGAALEQRLSDIWRPLAFFSRKFTASQRKYSAYDRELTAVYESIKFF
FT                 RHFLEGRPFKVLTDHKPLIYAFKQHSDKASPRQLRQLSFIAQFTTNFEYLP
FT                 GADNVVADSLSRIEALHLPVEVELVELAEQQSLDGELKHLLNSKNCSLKFK
FT                 KFIWGPTPHTELYCEMSGESIRPYIPVPLRKRVFDIFHNPAHPSAKVTDQI
FT                 IRQRYIWPNLHRDVAEWARACTDCQCKITRYVKQIPTHFTAPDARFEHVHM
FT                 DIIGPLPLCNNYKYCLTLIDRFSRWPEAVPLRDISARTVAQAFYDNWIARF
FT                 GAPRILTTDQGAQFESQLFSALLSLVGCKRIRTTAYHPAANGLIERWHRTL
FT                 KAAIMCHNTPDWVSVLSTVMLGLRTHVRLDTGASPAEFIYGTTLRVPGEFF
FT                 IQQNVTPDPQIFLEDFREYMRQIKPIPAAHHNKKRPFCFKDLYSCTHVFLR
FT                 CDAVKKPLERPYTGPFKVLQRDSEQVFTLETNGKPQSVSVERLKPAHFIND
FT                 KTDVPIVTDAPQITNSCNALPKTYSNPKKHVAFKLT"
XX
SQ   Sequence 4500 BP; 1290 A; 1166 C; 916 G; 1128 T; 0 other;
     cattggtgac cccgacgttc gttaagcaca aaagacgaag cgatacgcag agcatcaacg        60
     ctcgtcaagc ataacgacaa agtaatacgc agagcatctc gaacactcaa gccttccgta       120
     agaagcgcta gaagccgagt aaatcccgca catcgtcggg acagtcctca acgagcccaa       180
     ttttggacga gtcgatcttc ccaacgccaa ggagacgacg tacgaagacc acgacaggcc       240
     ggacaactgg acggacacat cctgcaagtc agcgacacgc gccagcgtac agctaagtcc       300
     gtgttagatt aagccgccaa ttcacgataa gtttcgcgcg ctttacgata acgtaacgac       360
     tgcgtggtga cgcgtataat ttttcgtcgc gcgtaatttt tagtcaaccg ccattatgtc       420
     ggttccgggc caggcagaca gcgacgacgc tcaggttagc tcatatcgcg tgcctaaaat       480
     accacctttt tggcgtgatg atcccgaaac atggttctta caagtggaag caacatttcg       540
     aatcgcaaat tgtaagacag accgtaccaa agctgactat cttatcagtg cgttagagag       600
     cgaggtcgtg caacatgtcc gagacctcgt taatgcggat ccccctcccg aggattttta       660
     tcaaactctt aaaaaacgaa ttctgtcagc cttttcaact tcaccagaag cgcgtcttcg       720
     tcagttgttg aagggtcaat cgctaggtga tcaaaagccg tcacacctgt taaatcgtat       780
     gcgccaattg aacggcggtc aatgcagttc agcggtatta aagtctctat tcctcgaaca       840
     gttgccagag tctcaacgag cgatcttagt agcgatgaac gaacccgacc ttcagaaaat       900
     cgcagacatc gcagacaaaa ttgccgacat gagtagtttg gatagtagta tggcgatagc       960
     tcctattcgg tcgcatccgg gtacaaacaa aacacgtttg ctcaaagaca cgaacgaccc      1020
     atctaacaca gaaaaacaac ttgcagagat cattaaacgt ctggattcgc tcgatagcaa      1080
     gtttgaaaaa ttcaaacgag accgttctcg ctcccgccca aactccacac agcgagatca      1140
     acgtacatcc gacgttaaac ccggcttatg ttttatacac caaaagtacg gtaaaaacgc      1200
     gacttcctgt cgaaaaccat gctcgtgggt aggcgaggag acttcggaaa actaaataca      1260
     ccttctcgat ccgaggcaat cgcgcaaggt gaacctaaac acaatcgcct ccacatccgc      1320
     gaccgtaaat ccggtcatcg ttttctaatt gataccggcg cggaaatttc agtgttagcc      1380
     gcctctttaa cgcagagaaa aactccgtca gagctcaaat tatacgccgc aaacaataca      1440
     cgtatcgata cgttcggcga acgccgtctt actttagaca taggattacg tcgagctatc      1500
     acgtggaatt tttgtttagc tgctgtgcca ttttcaatta ttggtgcaga ccttctaaaa      1560
     cattatggtt tagatgttag tctgagtagg cgctgcctct tcgatagcac taccaaatta      1620
     tataccacag gcagtattag caccgttccg gacttatgcc tttctacagt agatcattca      1680
     aataattttg ccaaaatcct cactgaattc caggaaatca ccggcgtgtt gcaacaggcc      1740
     acgcagaaaa ccagcgatgt tgaacatcat attctcacaa atggccctcc tactgcggaa      1800
     cgtcctcgac gtttggcacc ggataaatta aaagccgcaa aggctgaatt caaacgactc      1860
     atggagctag ggatttgtcg gccttcgagc agcccgtggg ccagtccaat tcatctagtt      1920
     cgaaaaaaat caggcgaatg gcgcatatgc ggcgactatc gtcgtcttaa cgccatgaca      1980
     atcccggaca aatatccagt cccacatctc cacgattttt cggcgaacct acagggaaag      2040
     aaaatttttt cttcactcga cctctttaga gcgtaccacc aaatccccgt agcaaaagat      2100
     gacatccaaa aaactgcggt catcacccct ttcggcctat tcgaatacgt ctcaatgacc      2160
     tttggccttc gcaacgccgc acaaaccttt cagcggtata ttcaccgcgc actcaaggac      2220
     cttgatttcg cgtttgtgta cattgatgat atcctcatcg catccccatc agtagaggag      2280
     cataaggaac atcttcgtac agtcttccgt agactcaagg aattcggatt atttatcaac      2340
     ccaactaagt gcgttttcgg tgtaagagaa ataaccttct taggccatct tgttaactcc      2400
     cagggttgca agcccactat agaaaaagtc gcagctatac aaaattttcc taagccgcgc      2460
     acagtcgttg aacttcgacg gtttctaggt acgttaaatt tttacaggcg cagccttccg      2520
     catgctgcga gcgcacaagc tcctcttcac gtttacttga cggattcgcg caagaacgat      2580
     aaacgggaaa tagcatggtc accggaagcc gaaattgcat ttctaaaagc caaacaggac      2640
     ctggcaaacg cagccttatt aattcacccg tccgatacag cggaaacacg catcgttaca      2700
     gacgcgtccg acaccgccgt gggagctgct cttgagcagc gcttatccga tatttggaga      2760
     cccctcgctt tcttttcacg caagtttacc gcatctcagc gaaaatacag cgcatacgat      2820
     cgcgagttaa cggcagttta cgagtcgatc aagtttttca gacattttct ggaaggtcgc      2880
     ccgtttaaag ttttaactga tcacaaacct ttaatttacg ccttcaagca gcattctgac      2940
     aaagcctctc ctaggcaatt gaggcaatta tcctttatcg cccaatttac tacgaatttt      3000
     gaatatctac cgggcgcaga taacgtagta gcagacagct tgtcacgtat agaagcttta      3060
     caccttcccg tggaagtgga actagtcgag ctagcggagc aacaatcact ggatggcgaa      3120
     cttaagcatt tgctaaattc taaaaactgc tcccttaaat ttaagaaatt tatatgggga      3180
     ccaactcctc acaccgaatt atattgtgaa atgtcaggcg aatccatacg tccttatatt      3240
     ccagtacccc ttaggaagcg agttttcgac atatttcaca acccagctca tcctagtgcg      3300
     aaggtcaccg accaaataat tcgtcaaagg tacatttggc ctaatctaca ccgcgacgtc      3360
     gccgaatggg ctagagcatg tactgactgc taacagtgta aaatcacacg gtacgtcaaa      3420
     cagattccca cgcattttac cgctcctgac gcacgttttg aacatgtcca catggacatt      3480
     attggccctc tgcctctttg taataactac aaatattgtt taacgcttat cgatcgtttt      3540
     tcgcgctggc cagaagctgt tcccctccgc gacatatcag cacgaacagt ggcacaagca      3600
     ttttacgata attggatcgc acgattcggc gcgccacgaa ttctgacaac ggatcaaggc      3660
     gctcagttcg agtctcaact cttttctgcc cttttatcgc tcgtaggctg caagcgaatt      3720
     cgcactactg cgtatcaccc agccgcgaac ggcttaatag aaaggtggca tcgcacctta      3780
     aaagcagcca taatgtgcca taacacacca gattgggtta gcgtactatc aacggtcatg      3840
     ctcggattac gcacacacgt gcgcttagac accggcgcgt ccccagcgga attcatatat      3900
     ggaacaacct tacgtgttcc aggcgaattt ttcatacaac aaaatgttac cccggaccca      3960
     caaatcttcc ttgaagattt ccgcgagtat atgcgccaaa taaaacctat accggcggca      4020
     catcacaaca aaaaacgccc attttgtttt aaggatctgt actcttgtac tcacgtattc      4080
     cttcgttgcg atgcggttaa aaaaccactc gaacgaccgt atactggccc cttcaaagtt      4140
     ttacaacgag actccgaaca agtcttcacg cttgaaacca atggtaaacc tcagagtgtg      4200
     tccgtcgaaa gacttaaacc tgcacacttc attaatgata agactgatgt acctattgta      4260
     accgatgctc cgcagattac taattcatgt aatgcgttac caaagacgta ctctaatcct      4320
     aagaaacatg tagcttttaa gttaacttaa gcattttgta ctcaagattt tattttttat      4380
     tctcgttgcg tccacagtag tgtaagctta gctattaaga acattgtaac catttagccg      4440
     tatatgttaa gcaacatttt tttttatata tatataacgt ttacactcag gggggagtac      4500
//
ID   Gypsy-22_LH-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   ADOQ01013083;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_LH_;
KW   Gypsy-22_LH-I; Gypsy-22_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-253
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01013083; Positions     308     560.
XX
SQ   Sequence 253 BP; 73 A; 63 C; 54 G; 63 T; 0 other;
     tgtaggctcc tgccgataac cacaccgtcc tatagtatcg accgtacaga gtcgagaggc        60
     gaagtagtta ctaaaaagaa cgcactcagg ctaggcgtct tcttcgagaa agatttacaa       120
     cggctcggca ttgtacaaac aagactcaaa tacattgtta tcgttaaagt gtattcgtag       180
     tgcttatttc atcccctccg atcatcggat ctagtgggca tcctcatcgg agcggctaat       240
     taaacacagc cca                                                          253
//
ID   Gypsy-22_LMi-I repbase;    DNA;    INV; 4004 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4004
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1463..2044,1909..2934,3032..4003)
FT                 /product="Gypsy-22_LMi-I_1p"
FT                 /translation="MIREGVMRPSSSPWSSALHLFQRRVGMAPLWDYRALN
FT                 ARTVPDRYPVPLLRDYNYALCGATIFSVLDCAKAYTQIPVAEADIQKTAII
FT                 TPFGLFESLFMTFGLRNAAQTWQRFIDSVLQGLTFCFAYLDDILVSLLPEQ
FT                 HRQHLTEVFKRLEQYGVVLTPPNAFSAKTKSIFWATRFHRRDRYPCQRRSR
FT                 PSYKKTGTVWRRSNTAKCVFGQNQVNFLGHKISSSGSLPLPEKVEAILQMN
FT                 RPRTCKELRRFLGVLNFYRRHLPHAAEMQMPLTAALTGPKSKGSTPVSWTE
FT                 EMISAFEAAKRSIAEAALLAHPDPCAPLALVVDASQTAIGGALQQLREGAW
FT                 QPLAFFSRKLSPSQQKWSAYDRELLAIYEAIKYFRSQLEAREFTIYTDHKP
FT                 LTYAFRQNNINCSPRQHNQLVYISQFTTDIKHISGIDNIVADYLSRVGSIT
FT                 CVTDFSELAVAQQSDPELHGLLEDPESSLKLRWWRFQAPTSNCIVMCPVAS
FT                 LVLSCPPHSEKVLSTIFITCATLEFARQHDWFPIVSCGQEYNCSICTCPYR
FT                 RGRPSRSIERSTLFVNNDRSFHPLARSVPLDNISAETLASAFVSTWVSRFG
FT                 CPLHITTDRGRQFESDLFAQLTKFCGIVHHKTTSYHPASNGMIERWHRTMK
FT                 AALMCHDESWTTALPMVLLGLRNTYKPDLDCSAAELVYGETLRLPGEFVDP
FT                 RPLQIPNTTDTNFICQLRERISRIQPPQASRHGTRPTYVHKDLDSCTHVML
FT                 RADGVKPPLQPPYSGPHKVIKRGDRTVDIIVNGKTTTVSLDRVKPAYILQD
FT                 EVSTKTQQTPDPVPATSPPQALPAADEKQPSGRTTRSGRRVHFPARFLDNA
FT                 PLSRRGL"
XX
SQ   Sequence 4004 BP; 1053 A; 1049 C; 949 G; 953 T; 0 other;
     ctggtgaccc cgacgtgatt gtttagccgc attaatcaca agaaggacgt gcactcaaca        60
     tgacagaaac acccgctgaa gttacgtcgt ctgtctcacg actcgccgtg cgtttgccgc       120
     cgttctggcc gcacaatccg gccttatggt ttgcgcaagt ggaagccagc tttctctacg       180
     caggaattac ggcagataca actaaatttg caatcgtggt gagtcaatta gacaaaatac       240
     gcggcggaga ttgaagacgt gatcaccact cctccctcaa cagatgctat agaagcttaa       300
     aactgaacta taagacggtc tcggcttcac aagaagaacg cattaggcaa gttctaacca       360
     ggaggatatc ggggacagaa gaccatctca atacttacgg catctgggag taaagtgata       420
     caggtacagt gcccgatatc gcacctgtgg agtaatcgct taccgcctca agtgaaagcc       480
     attatagctc gcaaaccgac atgcctttag acgcgtgcag aattagcgga taaaatattt       540
     gatgctataa cacctgcacc agtaagttca gtgcggcacc agtgagttca gtgacgtcat       600
     cgtgcagcag cttgacgacg caaatggtaa caagagccga ttatgacatt ctggccgcca       660
     aagtggattt gttgaccaag aaaatggagg aattactgac tcggcgtgac cgcagtggtg       720
     acagaagact taccgtaagc gatcgaggag ccgctcgtct actggttcat cgactcaggg       780
     ccgataggcc caccgtctgt tggtaccaca gaagatttgg tgaccgagcg aacaagtgca       840
     caatgccctg ctcacaccca aatgccggcg gcaatcgggt gtaggcgcgt cgtcagattg       900
     ccgggcgtcg tctcagcgcc tattcgtcag tgaccgtaag tctggacaga aatacctgtc       960
     gatactggct ctgacttgtg tgtgttcccg cgtacaagct gccagcaaac ggccgccact      1020
     cccttctgtt tgactgccgc caataattca gctattcgac gtacggactc tgcgaatcag      1080
     ctggatctcg gactacggcg tgattttact gggatttcac ggtcgcgatg tgacagaacc      1140
     tatatagggc agattttttg gccattataa actgctcccg acgtggcaaa tacgcggctt      1200
     gtagacggcg tcactggtta acggcttcag gttttcgtcg agatgcgaca gtgcacacgg      1260
     ctaaactcgt gcaaaacatc agcaccgaat acgccgactt aattcaagca tttccagcgc      1320
     ttacgagacc gccaggagca ccgaagcaga tactcacgac acggtgcatt acatcaatac      1380
     taccgacggc ccacctgtct cctgccgacc acgacgctta gcaccagatc gcttagctat      1440
     agcaaaagcg gaatttgacg ccatgattcg agaaggtgta atgcgaccgt ccagtagtcc      1500
     ctggtcgtca gcactccatc tgttccaaag aagagtgggc atggcgccct tgtgggatta      1560
     tcgagctcta aacgccagga cagtacctga tcgttaccct gtgccgttat tacgtgacta      1620
     taattatgca ttgtgtggtg caacaatttt tagtgtttta gactgtgcaa aggcatatac      1680
     acagattcca gtggcagaag cagacattca aaaaacagcc atcatcaccc ctttcggtct      1740
     ttttgagagt ctcttcatga cctttgggct aagaaatgct gcgcaaactt ggcaacggtt      1800
     cattgactcg gtgctgcaag ggcttacttt ttgtttcgcc tacctcgacg atattctggt      1860
     ttctctgctc ccagaacaac accggcagca tcttactgaa gtgtttaaaa gactggaaca      1920
     gtatggcgtc gttctaacac cgccaaatgc gttttcggcc aaaaccaagt caattttttg      1980
     ggccacaaga tttcatcgtc gggatcgcta cccttgccag agaaggtcga ggccatccta      2040
     caaatgaatc gtccaaggac ttgcaaagaa ctgcgtcgtt ttcttggtgt actgaatttt      2100
     tatcgacgtc atctgcctca cgcagctgag atgcaaatgc cgttaacagc agcactcacc      2160
     ggcccaaaga gcaaaggaag cacgccagtt tcgtggactg aggaaatgat ctcggctttc      2220
     gaagcagcca agcggagtat agcggaggcg gcattgcttg ctcaccctga tccgtgtgca      2280
     cccttggcgc tggtagttga cgcgagccag accgctattg gcggagcgct acaacaatta      2340
     cgagagggcg catggcagcc gctagctttc ttttctcgca agctttcgcc atctcaacag      2400
     aaatggagtg cctacgatag ggagcttcta gccatctatg aagctattaa gtactttcga      2460
     tctcaactag aggcaaggga gttcaccatc tatacagacc ataagccact aacatatgct      2520
     ttccgacaaa ataacatcaa ttgttcacct cggcagcaca accagttagt gtacatttcc      2580
     cagtttacga cagacattaa gcacatttca gggatagaca acatagtggc cgattatctt      2640
     tctcgcgtcg gcagcattac ttgtgtaact gatttctcgg aactggctgt cgcacaacaa      2700
     tcagacccgg aactacacgg cttacttgaa gatcctgaat cgtcgctcaa actgagatgg      2760
     tggaggttcc aggcaccgac gtcaaactgt attgtgatgt gtccagtagc aagcctcgtc      2820
     ctttcttgcc cgcctcattc agaaaaggtg ctttcgacaa tattcataac ttgtgccacc      2880
     ctggagttcg cgcgacaaca cgactggttt ccaatcgttt cgtgtggcca ggaatgaaga      2940
     aagactgtcg tgaatgggca cggacttgta ttaaatgcca atgtagcaag gtaaatcgac      3000
     atgtgcacgc gccagtgggc gattttccta atacaactgc tcgatttgca catgtccata      3060
     tcgacgtggt aggccctctc gctccatcga acggtcaacg ttatttgtta acaatgatag      3120
     atcgtttcac ccgctggcca gaagcgtgcc actagataac atctctgcag agacattagc      3180
     atctgccttc gtttctactt gggtgtcacg ttttggttgc cctttgcata ttacaacgga      3240
     ccgtgggaga caatttgaat ccgatctgtt tgcacagttg actaaatttt gtggcattgt      3300
     gcaccataag acaacaagct atcatcccgc tagcaacgga atgatagaac gctggcacag      3360
     aacaatgaag gcagccctga tgtgccatga cgaaagttgg accacagctc taccaatggt      3420
     tttgcttggc ctcagaaaca cttataagcc ggatctggat tgttcagctg cagaacttgt      3480
     atatggtgaa acgctacgcc taccgggaga gtttgtggac ccacggccgt tacagatacc      3540
     caacacgaca gataccaatt ttatttgtca gttgagagag cgcatttctc gcatccaacc      3600
     tccgcaagct tccaggcacg gcactcgccc tacttatgta cacaaggacc ttgacagttg      3660
     cacacacgta atgttacgag ctgacggcgt gaaacctcca ttacaaccac cttactcagg      3720
     ccctcacaag gttataaaac gaggagaccg cacggtggac atcattgtaa acggcaaaac      3780
     tactaccgtc tcgctagacc gcgtcaagcc tgcatacatt cttcaagacg aagtatcaac      3840
     gaaaacacaa cagacacccg acccagtccc agctacttcg ccacctcaag ctcttccagc      3900
     cgctgatgag aagcagcctt caggacgcac aacaagatca ggtcgacgag tccatttccc      3960
     tgcaagattt ttagacaacg ctccgctttc ccggcggggg ctga                       4004
//
ID   Gypsy-22_LMi-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-375
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 375 BP; 84 A; 75 C; 81 G; 135 T; 0 other;
     tgtagcagac agcgaagaaa cgtgcagtga gagttgtgtg ttttcgcgca ttattttggt        60
     attactgtca aagtgcttcc gcgcctgccg ctaggggcgc tggtccttcg cgcttactct       120
     ttgaatgttt ttgttttgtt tctttttagt tacggagttt tatgttcttg tttgtgtcga       180
     gattcgtatt actgcttgta aaacctctcg attatgcatt gttctgcaat caactccttt       240
     cacattgctt taataaagaa gttaaagtgt ttctaattaa aggtcgttct cattacaact       300
     gcggcgattt taatacggac acgaagtgtt gtatattcgg acggccactc tcaaacaact       360
     caggcctctc cgaaa                                                        375
//
ID   Gypsy-22_MoPha-I repbase;    DNA;    INV; 4737 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4737
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1101-1101 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           375..4583
FT                 /product="Gypsy-22_MoPha-I_1p"
FT                 /note="SAP domain, zinc finger, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSSKKFSVAQLRAELARRELPTSGKKKDLIARLEESD
FT                 PSGEWMNVVAATVANEANANEDGAETEDSDGEIENLTRRYHDMQLQFERRE
FT                 NELLRRELDLARRENEQLRRDVQPPVENAYRRENINAMLELVGFFDGGVGT
FT                 FRKWEQQIRQLCQTYRLDDDRAKLLVSNKLKGKAKIWFQAENTIAMSLDEV
FT                 MDGFRKMYDHRPARVTLRKKFEAREWKSSESFADYFHDKIVLAKDVPIDEE
FT                 EMVDYLVDGIPSDHLQDLARLKEFSTKEDMLKAFEKVTLRLTTKINAKRDS
FT                 RSAGKNDTKSADLPKDEKQAKSDEEKLKSPRCYNCNKLGHLAADCKLPKRE
FT                 KGSCFKCGEMGHVSKDCPAKATTSKQVAVVDEAENQVCSISGEAEKEATFF
FT                 RDVDYEISRSDASQKIRLNTLMDTGSKVSFVKESLIPAEAIESFGKSSENY
FT                 FGINHSPLHIVGYIRLNITLDRETKNELIILVVPDTTMANPIVLGRDVLKE
FT                 FGLGLRKLEAQAVNEILNVEISDPRNIISDTLQINNKIPCEIQLRLRELFE
FT                 SEYVEPARPNIPKVDMELKLSLTDEKPFHFNPRRLSISEKDELRKILDRLL
FT                 ERKIIQPSQSEYVSPIILVKKKNGECRLCVDYRVLNKVLRRDNYPLPLIED
FT                 QIDILKDKKYFSSFDLKDGFFHIRIADESVKYTAFTTPFGVFEYRQMPFGL
FT                 KVGPSRFQRFVNEALAELIKSGDIVVYMDDILVATSTLQHHFTVLKRLFNC
FT                 LVENLLELRIDKCKFLYTEIDFLGYRISENGIQPNRSGVETIENYPVPQNV
FT                 RSLQCFLGMASYFRKFIEGFSVIAKPLYELLRKNIEFKFGEEQLKAFQMLK
FT                 KKLLEAPVLSIYSPHDETELHTDASSHGFGAALMQKKKDAKFHPVMYFSKR
FT                 TTDTESRYHSFELETLAVIYALRRFRIYLHGLKFKIVTDCASLKMTLEKRD
FT                 VNPRIERWAIELMQYDYVLEHRIGTKMKHVDALSRATSILVVEANPLEWEL
FT                 ALGQNRDPKIRKLREKLEKIQDKQYEMRNGLVYRKKNNDLRFYVSDKMERH
FT                 ILQKYHDELGHFGPEKTYCAIDQTYWFPQMRTKIKDYINNCLKCIAFSPGA
FT                 GKSEGFLHCIPKGNLPFQTFHIDHLGIKDKKHLVKQHILVVIDAFTKYTKL
FT                 YATKTTASKESIECLKQHFANYSRPHTIVSDRGTSFTSDEFEEFLEKNNVR
FT                 HVLIATGSPKANGQVERVNRVLGPLLAKTVDNSVGKFWYKVLTEAEFAINN
FT                 TINKSTGDTPSRLLFGVNQRGESIDRIKESLEEEITPDRDLEMIRDKAEKN
FT                 ILRSQEYNQRYFDRSRKEPRRYKEGDHVGIRNFDNTPGVSRKLIPEFKGPY
FT                 EITKVLRNDRYIVRDVENSQSSRRPYEGTWEANNIRPWQT"
XX
SQ   Sequence 4737 BP; 1554 A; 915 C; 1116 G; 1152 T; 0 other;
     aatcagaagt gggatcggga cacgtgcgca caaggaagaa gttcggcaag attacgtcag        60
     ccgcaacgca gtgacggcgg ccatattccg ttcgttggta cgccggatca cacgaagaag       120
     cgtgccgctg ctttaagaga cagaaacgat tccgtgagac ggaccgagaa acggattcgc       180
     gagtcaaggc gacgtgtgac gttgttcggt gtgcgaacgt gtacatacgt gtaagcatct       240
     acgcacagga gtgtgcgaga cgcgatcggt ttggcgccat taagagacga ttcgcgaaag       300
     tgtccggaag atagcattcc gtcgtgatac gagtgcgtgg tgcaaggaca caaggacggc       360
     acagaacaag caacatgagt tcgaagaaat tttcggtggc tcaacttagg gccgagttag       420
     cgaggcgaga gttaccgacc agcggaaaga agaaggacct gattgctcgg ttagaggaga       480
     gcgatcccag cggtgagtgg atgaacgtag tggcggcgac tgttgcgaac gaagccaacg       540
     cgaatgaaga tggcgcggaa acagaagaca gtgacggaga aatcgagaac ttaacccggc       600
     gataccatga catgcagcta cagttcgaaa ggcgggaaaa tgaactcttg agaagagaac       660
     tcgatttagc cagacgtgag aacgaacaac tgcgacgcga tgttcagcca cccgtagaga       720
     atgcatacag aagagagaac ataaacgcca tgttggaatt agtcggattc ttcgacggag       780
     gtgtcggtac gtttcggaag tgggagcaac aaatccgaca gctatgtcaa acttatcgtc       840
     tggacgacga tcgcgccaaa ttactcgtca gtaataaatt gaagggaaag gcaaaaattt       900
     ggtttcaagc tgagaacact atcgccatga gcctagatga ggttatggac ggcttcagga       960
     aaatgtacga ccatcgtccg gcacgcgtaa cactgaggaa aaaattcgag gcgagagagt      1020
     ggaaatcatc cgagagtttt gcggactact tccacgataa aattgtgctc gcaaaagacg      1080
     ttcccataga cgaggaagaa atggtcgact acttggtcga tggcattccg agcgaccatc      1140
     tccaagattt ggcgagattg aaagaatttt ccacgaagga agatatgtta aaagctttcg      1200
     aaaaggtgac gttgcgatta acgacgaaaa tcaatgcgaa acgcgactca cgatcagccg      1260
     gtaaaaacga cacaaaatca gctgatttac ccaaggacga gaagcaggcg aaaagcgatg      1320
     aggaaaaatt aaagagccct cgctgctaca attgcaacaa attgggtcat ctggctgccg      1380
     attgcaaact gccgaaacgc gagaagggct cgtgctttaa atgtggcgag atgggccacg      1440
     tatcaaaaga ctgtccagcg aaggccacga catccaagca ggttgctgtt gtcgacgagg      1500
     cggagaacca agtctgctcc atttccggcg aggcagagaa ggaagcgaca ttcttcagag      1560
     acgtcgatta tgaaataagc cgttccgacg ctagtcaaaa aatcaggtta aatacgttaa      1620
     tggatacagg tagcaaggtt agctttgtta aggaaagtct cattccggcg gaggctatag      1680
     aatcgtttgg taagtcttca gagaattact tcggtatcaa tcactctccg ttgcatatag      1740
     tcggatacat acgtttgaat attactcttg atcgcgaaac gaaaaatgaa ttgataatat      1800
     tagttgtacc ggatacgact atggcaaacc cgatagtatt aggacgcgat gtgctaaaag      1860
     aattcggtct gggtctaaga aaactagaag cccaagctgt aaatgaaatt ttgaacgtag      1920
     aaatcagtga tccgcgaaat ataatttcag atacgcttca gattaataac aaaataccat      1980
     gcgaaataca gttaaggtta cgtgagctct ttgagtctga gtacgttgaa cctgcaaggc      2040
     cgaatattcc gaaggtcgat atggaattaa aacttagttt gactgatgaa aaaccgttcc      2100
     atttcaatcc gcgtcgattg tctatttctg aaaaggatga attaagaaaa atattagaca      2160
     gactactaga gagaaaaata attcagccta gtcagtcaga gtatgtttct cccattattt      2220
     tagtgaagaa aaaaaacggc gaatgcagac tttgtgtcga ctatcgagta ctaaataaag      2280
     ttttacgtcg agacaattat cctcttccat taatagagga tcagattgat attttaaaag      2340
     acaaaaaata tttcagtagt tttgatttaa aagatggttt cttccatatt cgaatcgctg      2400
     acgaatcggt aaaatatact gcatttacga cccccttcgg agtattcgag tatcggcaaa      2460
     tgcctttcgg gctcaaggta ggaccatcga gatttcaaag gttcgtaaac gaagcattag      2520
     cagagctcat taagtcagga gacatcgtcg tgtatatgga tgacatactg gttgcgacat      2580
     ccactttaca acatcatttt acggtattaa agcgattatt taattgtctg gtcgaaaatc      2640
     tgttggagct ccgaatcgac aaatgtaagt ttttatacac tgaaatcgat tttttgggtt      2700
     atcgcatctc tgaaaacgga attcagccaa ataggtcagg agtcgagacg atagaaaatt      2760
     atccggttcc acaaaacgtg agaagcctac aatgtttcct tggaatggct tcatatttcc      2820
     gaaaatttat tgagggcttt tccgttatcg cgaaaccact ttacgaacta ctccgtaaaa      2880
     acattgaatt taaattcgga gaagaacaac ttaaagcatt ccagatgtta aaaaagaaat      2940
     tgctagaggc acctgtactt agtatataca gtcctcatga cgagacggaa ctccacacag      3000
     acgccagctc acacggtttc ggtgccgcac tcatgcaaaa gaaaaaagac gcgaaatttc      3060
     accctgttat gtatttctca aaaagaacga ccgacaccga aagccgttac cacagcttcg      3120
     agctggagac gcttgcggtc atctatgcct tacgtcgttt tcgtatttat ttacacggtc      3180
     ttaaatttaa gattgtaact gactgcgctt cattaaaaat gaccctggaa aaaagggatg      3240
     taaatccgcg aatcgaacgt tgggctattg aacttatgca atatgattat gttctagaac      3300
     acagaatcgg tactaaaatg aaacatgtag atgccctcag tcgggccacg agcattcttg      3360
     tagttgaagc taatccgctc gagtgggaac tagcgttagg tcagaatcgc gatcccaaaa      3420
     ttcgaaagtt gcgcgaaaaa ctcgagaaaa ttcaggacaa acaatatgag atgcgaaacg      3480
     gattagtcta tagaaagaaa aacaacgatt taagatttta tgtatcggat aaaatggaaa      3540
     gacatatact ccaaaaatat catgacgaat taggccattt tggtccggaa aaaacatatt      3600
     gcgctatcga tcaaacttat tggtttccac agatgcgtac taaaattaaa gattatatta      3660
     acaattgtct taagtgtatt gcgttctctc caggtgcagg caaatcagag ggatttttac      3720
     attgtatacc taagggtaac ttaccgtttc aaacattcca cattgaccat ttaggaatta      3780
     aagataaaaa acatttagtg aaacaacata tcctagtggt tattgatgcc tttacaaaat      3840
     atacaaagtt gtatgcgaca aagactacgg cttccaaaga gtcaattgag tgtttgaaac      3900
     agcactttgc aaattacagc cgacctcaca ctatagtatc cgacagagga actagcttta      3960
     cttcggatga gttcgaagaa tttctcgaga aaaataacgt tcgacacgtg ttaatagcta      4020
     cgggctctcc gaaagcgaac gggcaggtgg agcgcgtcaa ccgagtgtta ggtccccttc      4080
     ttgctaaaac agtcgataat tccgtcggaa aattttggta taaggttttg acagaagcag      4140
     aattcgcaat aaataacacg ataaataagt ccacgggtga taccccaagt cgcttattat      4200
     ttggagtaaa ccaacgcggc gaaagtatcg ataggatcaa agaaagtcta gaggaggaga      4260
     ttactcctga tcgtgatctc gaaatgatac gcgacaaggc cgaaaaaaat attctaagaa      4320
     gtcaagagta caaccagcgt tattttgatc ggagcagaaa ggaaccgcgc cggtacaaag      4380
     aaggtgatca cgtagggata agaaatttcg ataatactcc cggagtgtcg aggaaactca      4440
     tccccgaatt taagggaccc tatgaaataa ccaaggtcct tagaaatgat agatatattg      4500
     ttagggacgt agaaaattct cagtcatcgc gacgtcccta tgaaggaaca tgggaagcta      4560
     acaatatcag accctggcaa acttaaccaa aaggcgataa ttgcgcatat agtagttaga      4620
     atcttgttag attataaggt agtaataagt tcagaaattg taatccttcg ttatatttta      4680
     ttttgttcta tttttaactg tgtccgaggc cggacaggtg atcaggaaag gccgagt         4737
//
ID   Gypsy-22_MoPha-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-269
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1186-1186 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 269 BP; 76 A; 55 C; 69 G; 69 T; 0 other;
     tgtaaggcaa taatattatt ttgaatcatg cgcccttgga aggcgtcgcg tcgtagcgag        60
     cgagcctaga ttcgaggcta gacaaggggc gggcgtaaga gagagacggt agatgaagaa       120
     gcggcgggaa cacagtacgt gtccgatcgt cacccagaga ggtgctgtat ttacgatata       180
     ataaattctc agtttcttgt acaatgtgtg tagtttagag cattccgtat tccctcgaac       240
     cacacattca tattctacaa tatcctaca                                         269
//
ID   Gypsy-22_MSe-I repbase;    DNA;    INV; 4367 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4367
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 899-899 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..3421
FT                 /product="Gypsy-22_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase (partial)."
FT                 /translation="MSIGKIREFDIQSGTWSSYVDRLEMYFKANDIKDELK
FT                 LPTMISAMGDEAYELLVNLASPKKPAELTFDGASDLLRQHLQPTPSVLAER
FT                 YRFRQRRQLPEESIADYVAELKKLARKCEFKEELNGNLRDQFVCGLKGDIM
FT                 RQRLFAEDGNIDFVSAVRLATSLEAAERDAAAVEAGSGSEVLENAKVHKIS
FT                 AQVTARGQSVRGSGGRHTRPGRGGAVWKGAHKVAVVETQLPNRVNNDSCKG
FT                 CGSTSHLYEGCRFRYFVCSRCKNAGHLRRMCPKAARGSVRGEYYSDRKFHY
FT                 GEVDVSDRSSEEVEDASMDLHHLNLRDYKAVSYPISLDGEVINMEIDTGTA
FT                 ISCISKNTYDEHFRHRPIRPYNLCLKFIDGSKIQPLGVIKPLVTHGSITKN
FT                 LELFIISGGTASLLGRQWLAELRISVPELKTNIVKRRNIITSRNDSXSVFH
FT                 NKSVKLNNKIEILLDRYKNLFDGSLGKFTGGKATLRVREGAAPVFHRARPL
FT                 PFALRERVDAEIDAMLRDGIIEPVDCSEWASPLVPVNKSDGALRVCVDYKT
FT                 TVNPVLLVDRYPLPRIDDVLVVLNGSQYFSKIDLSQSYNQIELDDSKKYTV
FT                 INTHRGLFIYNRLVFGLSSSPGIFQRIMTNLLTGIPNVAVFIDDVIIGGQT
FT                 ELEHLEALEMVFKRLFDSGLRLKKSKCVFIAQEVSYLGYIISKDGIKADPA
FT                 KIEAIVKIPRPINVSDLRSFLGLANFFAKFVKNFSLRLVPLYNLLRKNVKW
FT                 EWKQDCEEAFIGIKNILTSSKVLAHYDPNKPLIVTCDASAVGLGGVLSQPS
FT                 GGSRGGPERPVAFVSRTLTKAEQNYSQIHKEALAIIFCMKKFHQYVFGRRF
FT                 VLRTDHKPLVSIFGPHVGIPTMTASRMQRWAIILSAYSYDIEYVKTDENTA
FT                 DGLSRLPVRRDNKPVSAMPEQTYLHFAQDTLLLDYNEIKRCTARDPILGRL
FT                 LGFIRDGWPTXCEISVMQPYFNRKNELYEELGCVMWGHRVVVPEGCRERVL
FT                 KILHEPHMGIVKSKGLGRSYVWWPGIDEAIEVMCRECATCAAHADAPPRQA
FT                 PRPWPWPSKPWARLHLDFLGPIFGQTYLVVIDSMSKWVEIFNVSGTTATST
FT                 ITKLLELWSRWGYRDK"
FT   CDS           3403..4242
FT                 /product="Gypsy-22_MSe-I_2p"
FT                 /note="integrase (partial)."
FT                 /translation="VGIPRQIVTDNGPPFTSSEFQEFLKNYGVDHIFTAPY
FT                 HPASNGAAENAVKTLKRVIKKAYFEKKNIMKALYTFLLYYRNTPHSSTGEC
FT                 PATLMLGRRVRTRLDILKPDLTSRMSQVQKQQVENAGGAERVLVSGEPVWY
FT                 RQFLKGEKWLPGKVERQIGPSNFRVSDEKGNQVHRHIDQVKRRTRNSLVFP
FT                 SPECLSPMTSPPESGPGSDGKDETITSRATPLAVGELERAAQEQPSSAIEG
FT                 HEDGAFEPKPLGLPQQRQDHTNSRPIRQCRLNNPVNYKC"
XX
SQ   Sequence 4367 BP; 1278 A; 799 C; 1147 G; 1141 T; 2 other;
     ttggcgacga ggaaaattct ggatagtgca ggaaatagta tacagaacaa tgtctattgg        60
     taaaattcgc gagtttgaca ttcagtcggg tacgtggtca tcatacgtgg atcgactcga       120
     gatgtatttt aaggcaaacg atatcaaaga tgagttgaag ctgcctacaa tgatatcagc       180
     aatgggagat gaagcgtacg aactcttggt aaacctggca agtccgaaga aaccggcgga       240
     actaacattt gatggagcca gtgacttgct gcgtcaacac ctacagccaa ctccgtcagt       300
     gctcgcggaa aggtacagat tcagacagcg gagacagctt cctgaggaaa gtattgcgga       360
     ttatgtggct gaattaaaaa aattggccag gaagtgcgag tttaaggagg aattaaacgg       420
     gaatttacgg gatcagtttg tttgcggact taagggggac ataatgcgac aacggttgtt       480
     tgcggaggac ggaaatatag attttgtaag tgcagtaaga ctagcgacgt cattagaagc       540
     agcagagcga gatgcagcgg cggtggaggc gggaagcggg tcagaggtgt tggaaaatgc       600
     caaagtgcac aaaatatcgg cgcaggtaac ggcccgggga caaagcgtac gcggaagcgg       660
     cgggcgtcac acgcgaccgg gtcgcggcgg cgcggtctgg aaaggcgcac ataaggttgc       720
     ggtggtggaa acgcagcttc cgaatcgtgt caacaacgat tcctgcaagg gctgtgggtc       780
     gacgagtcat ctatatgagg ggtgtagatt ccgatatttc gtctgcagca ggtgcaaaaa       840
     tgcgggtcat ctgcgccgga tgtgtccgaa agcagctcgt ggatcagtgc gtggtgaata       900
     ctatagtgat aggaagttcc actatgggga ggtcgatgtt agcgatcgat catcggagga       960
     ggtggaggac gccagcatgg atttacatca cttaaatttg cgggattaca aggcggtgag      1020
     ttatcccatt tcactggacg gcgaggtcat taatatggaa atagacactg gaacggctat      1080
     atcgtgcatc agtaaaaata cttatgatga acattttaga catcggccta tacgaccgta      1140
     taatttatgt ttaaaattca tagatggttc aaaaattcaa ccgttaggtg tcataaagcc      1200
     cttagttaca cacggtagta taaccaaaaa tttagagtta tttattatca gtgggggtac      1260
     tgcttccttg ttaggtagac agtggcttgc agagctgaga atctcagtcc ctgaattaaa      1320
     aacgaatatt gttaaaagac gtaatattat aactagtcgg aatgatagtw gcagtgtgtt      1380
     tcataacaag agtgtaaaac taaataataa aattgagata ttgttggaca ggtataagaa      1440
     tttgttcgac ggtagcctgg ggaagttcac ggggggcaag gcaacgctac gggtgcggga      1500
     aggggcggcg ccggtattcc atcgcgcgcg cccattgcca tttgcgctgc gcgagcgcgt      1560
     cgacgccgag attgacgcga tgcttcgcga tggaataatt gaaccagtcg attgttcgga      1620
     gtgggcatca ccactagtcc ccgtaaataa gtcggatggg gcactcaggg tttgtgtaga      1680
     ctataagact actgttaacc cggttttgct ggtcgaccgg tatccgttac ccagaattga      1740
     cgatgtactg gtagtattaa atggcagtca gtattttagt aaaatcgatt tatctcaatc      1800
     gtataatcaa attgagttgg atgactctaa aaagtacacc gttattaaca ctcatcgggg      1860
     cttatttata tataaccgtt tagtttttgg gctatcgtcc agtccaggga tattccagcg      1920
     tattatgaca aatttactta caggtatacc taatgtggcg gtgttcattg atgatgtcat      1980
     aatagggggc caaacggaat tagaacattt agaagctttg gaaatggtat tcaagcgcct      2040
     atttgacagt ggcttaagat taaaaaaatc gaaatgcgtt tttatagctc aggaggtatc      2100
     gtatttagga tatataattt caaaggatgg tataaaggca gaccccgcga aaatcgaagc      2160
     gatcgtaaaa attcctagac caataaatgt ctctgactta cgttcatttt tggggttggc      2220
     aaattttttt gctaagtttg ttaagaattt tagtctcaga ttagtgccat tgtataattt      2280
     acttcggaaa aatgtaaagt gggaatggaa acaagactgt gaagaagcct ttataggaat      2340
     taaaaatatt ttaactagtt caaaggtctt ggcacattat gatccaaata aacctcttat      2400
     tgtgacgtgt gacgcaagtg cggtggggct ggggggcgtg ttgtcgcagc cgagcggcgg      2460
     aagccgaggc ggacccgaac gcccggtcgc gttcgtatcg cggacactta ccaaagcgga      2520
     acaaaattac tcgcaaatcc ataaagaggc attagctata atattttgta tgaaaaagtt      2580
     ccatcaatac gtttttggta gacgttttgt actacgcaca gatcataaac cgctggtatc      2640
     gatttttggc cctcatgtgg gcattcctac catgactgct agtcggatgc aaaggtgggc      2700
     aattatttta tcggcgtata gttatgatat cgaatacgtt aagacggacg agaatacagc      2760
     ggacggcctg tcacgactgc ccgtgcgcag agataacaaa ccggtttctg cgatgccgga      2820
     acaaacttat ttacattttg cgcaggatac attgttatta gattataacg aaattaaaag      2880
     atgtactgct agagacccta tcttaggcag gttgttagga tttatacgag acggatggcc      2940
     tacggawtgc gaaattagtg tcatgcaacc ttattttaat aggaagaatg agttatatga      3000
     agaactcggt tgcgttatgt ggggtcacag ggttgtagta ccggagggat gtcgggaaag      3060
     ggtactaaaa attttacatg aacctcacat gggtattgtt aagtctaaag gtttaggccg      3120
     aagttatgtg tggtggccgg gtattgatga ggctatcgag gttatgtgtc gtgagtgcgc      3180
     gacatgtgca gcacatgccg atgcgccccc gcgccaggcg cctcgtccgt ggccctggcc      3240
     gtccaaaccg tgggctaggc tacatttaga cttcttggga cctatttttg gacagacata      3300
     tttagtagtt attgattcga tgtcaaagtg ggtggaaatt tttaatgtat ctggtacaac      3360
     agcaacaagt accattacta aattgctgga actttggagt aggtggggat accgcgacaa      3420
     atagtgacag ataacggtcc accgtttacg agttcggaat ttcaagaatt ccttaaaaat      3480
     tatggggtag atcacatatt taccgcacca tatcatccag catcaaatgg tgctgccgag      3540
     aatgcggtta aaacgcttaa aagagtcatc aaaaaagcct atttcgagaa aaagaatatt      3600
     atgaaagctt tatatacatt cttactgtat tacagaaata ccccccattc atctacaggc      3660
     gaatgtccag cgacgctaat gttaggtagg cgtgtaagaa cgaggttaga catactaaag      3720
     ccggatttaa catcacgcat gagtcaggtg caaaagcagc aggtagaaaa cgcgggtggg      3780
     gcggagaggg ttttagtatc gggagaacca gtttggtata ggcaatttct taaaggggag      3840
     aagtggctac cggggaaagt agaacgacag attggtccat ctaattttag agtttccgat      3900
     gaaaagggta accaagtaca tcgtcacatc gaccaggtaa agcgtagaac tagaaactca      3960
     ttggtcttcc caagcccgga atgcctctct cctatgacca gtccgcccga atctgggccg      4020
     gggagtgatg gcaaggacga gaccattaca tccagggcga cacctttagc ggttggggaa      4080
     ctcgaacgag cggctcagga gcagccttct agtgcaattg agggtcatga ggacggtgcc      4140
     tttgaaccta aaccccttgg acttcctcaa cagcgccaag atcacacaaa ctctcggccc      4200
     ataagacaat gtaggttaaa taatcctgtt aattacaaat gttaagccta tttactaagt      4260
     tagttaagtt tacgtattga gtgataataa attgtcaaat ttgttaaaaa ttgttgttat      4320
     tagaatagta ctttgattgt aaatttcata aagtaagtgt ggaggag                    4367
//
ID   Gypsy-22_MSe-LTR repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-132
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 948-948 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 132 BP; 41 A; 19 C; 28 G; 43 T; 1 other;
     tgtagtgtat aaaatactcg tatgaattat aacgagcggt ggcgggtagg tttaagaaat        60
     sagttcgaaa tacactttgt acgcggacgt tgtgttttat taattctccc agtaattcct       120
     agaaatacta ca                                                           132
//
ID   Gypsy-22_OrIn-I repbase;    DNA;    INV; 4449 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4449
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1563-1563 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..4231
FT                 /product="Gypsy-22_OrIn-I_1p"
FT                 /note="SAP, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDTESERSFVEVEVDIRNMNVKDIKNELGKRGLSTA
FT                 GNKKALIKRLSEFVNDKRSKPSTSAQTTEFVPESRKFGFAFSFKDVEETLS
FT                 KFDGEPGSDITRWIHEFEDTANLFEWNKLQRLIFAKRLLVGTALSFVRGER
FT                 GLNDFDNLKKSLIDEFGTTMCAAEIHRMLENRKIKEGEDPYTYFIAMKEIA
FT                 SKTDIDDMSLMTYVCKGIYDPNKIMLYGAKNLTDFKERLKALKQLTHDSKS
FT                 SKLFHKPPKKNDERSDKKNEEQAKNGPPVVKCCYNCGQNGHISSQCQRPKI
FT                 AKGSCYECGSSQHQIRNCPKKSTNRSGSTNCIGVSDMPLINFNLKVNDSFI
FT                 NIKEALLDSGSAVSLIKQKFIPMNVLKLPPPNRRFEGINHAKIDIIGSVEA
FT                 VVDFHRNFNMIFYVIPDYVTSFDCIIGRDFIKNSCLKYELSAEGGLKILNV
FT                 QNVDESLLSEFDNMDLPILTINENKVGNIEFDEDLDWESKEQCIFLIDNYL
FT                 NAKRPNDPEVDYEMSISLIHSQPFFVNPRRLSFAEKDAVKDMTEKLLAENI
FT                 IRESKSPYASPIVLVKKKNGDYRMCIPIDYRALNKITVKDHFPLPLIEDNL
FT                 DLLRDKRVFTLLDLKNGFHHVKVAEDSIKYTAFVTPFGHFEYVRMPFGLCN
FT                 APSNFQRFVSKIFDKLIKERKLIAYFDDLLIATSTVKENLDILEEVLSLMI
FT                 RNDLQLKIDKCKFLKGEITYLGYSIDKRGIRPNPVLTKDILDYPVPTNVKQ
FT                 VQRFIGLASYFRKFVENFSLIASPLYRLLKKDAVFKFGEEELKSFSILRDH
FT                 LAARPLLAIYSPKLATELHCDASKEGFGAILLQKQKDDNKFHPVFFFSRKA
FT                 TTSESKLHSFELETLAIKYALERFRIYLHGIKFRIVTDCNAVAMTISKRDV
FT                 SPKIARWVLFFEQFDYSLEHRNSERMQHVDALSRTILAVDELVDNALSVKQ
FT                 GSDPDILKLRDSLERSEHPYFELRNGFVYRKTSDGDLRFYVPSDLRDSVLR
FT                 AYHDNLAHGSAGKTLEMVKRLYWFPKMDTYVKRYVGNCLKCIMYNPMSGRK
FT                 EGFLHPIPKGEVPFETIHVDHYGPLPKTFRGTKFVFVVIDNFTKFTRLFGC
FT                 KTTNSKECIKHLDDYFRSYSRPKKLISDRGSCFTSSEFVDFLSNLNVTHIL
FT                 NATATPRANGMVERVNRSITPILSKFDSDWDLKLNVAEFVFNNTVNSSTNA
FT                 TPSTLLFGINQNGPVQDDLGSLVQLECDRAVNIDEIRKQASQSQSKTDSYN
FT                 ESYFNKKRKEITQYKEGDLIVIFNKDVTPGVSKKLLPKFKGPFVVKKVLPN
FT                 DRFLIGDVDNCQYGRNPYVGVMAPERMRPYLKTL"
XX
SQ   Sequence 4449 BP; 1383 A; 727 C; 940 G; 1399 T; 0 other;
     gcttcagaag cgggattaga tagataaatc gattgaatga aagacgaagt tgacgaaagg        60
     acaatgaaat gaaacgagaa tgatgaacgt gcgccgttga ctgaggttat gttatgaatg       120
     tacgataact ctgttttctc agttctaaag tgctcagttc agtaagtaga gttctttctt       180
     tgaataaata agaatgtccg atacagaaag tgaaagatcg tttgtcgaag tcgaggtcga       240
     catccgaaat atgaatgtta aggatataaa gaatgaactt ggaaagcgtg gcttaagcac       300
     ggctggaaat aagaaagcct taatcaaacg attgtcggaa tttgtgaatg ataaacgaag       360
     taaaccaagt acatcagctc aaactacaga atttgtacca gaaagtcgga agtttggctt       420
     tgcgttctct tttaaagacg ttgaagagac tctcagcaaa ttcgacggcg agcctggaag       480
     tgacatcaca cgttggatac atgaattcga agacacggca aatcttttcg aatggaataa       540
     attacaaaga cttatttttg ccaagaggct cttagttggg accgccttat ccttcgtccg       600
     aggcgaacga ggattaaatg attttgacaa cctgaaaaag tccttgattg atgaatttgg       660
     aaccacaatg tgtgccgcag agatccatcg tatgttggaa aaccgaaaga ttaaagaagg       720
     tgaggatcca tacacttatt tcatcgccat gaaagaaatt gcgtccaaaa ctgacatcga       780
     cgacatgtcc ttaatgacat atgtttgcaa gggcatatat gaccccaaca aaataatgct       840
     atatggggct aagaatttga ccgacttcaa ggaacgattg aaggctttga aacaactcac       900
     gcatgattca aaatcttcaa aactattcca caaaccaccc aagaagaatg atgaaaggag       960
     cgacaagaag aatgaagaac aagcgaagaa tggtccaccg gtcgtcaagt gttgctacaa      1020
     ctgtggacag aacggccata tttcttccca atgccagcga cccaaaatag ccaaagggag      1080
     ttgttacgaa tgtgggtctt cgcaacatca aattagaaac tgcccgaaga agtcgacgaa      1140
     tcgcagcgga tcgacaaatt gcatcggagt aagtgatatg cctttaatta attttaattt      1200
     gaaagttaat gattcattca ttaatattaa agaggctttg cttgattcag gtagcgctgt      1260
     ttctttaatt aaacagaaat ttattccaat gaatgttttg aaattgcctc cgccaaaccg      1320
     aaggtttgaa ggtataaacc atgccaagat tgatattatc ggatcagtcg aagctgttgt      1380
     agatttccat cgtaacttta atatgatttt ttatgtcatt cctgattatg ttacatcatt      1440
     tgattgtata attggccgtg attttatcaa aaattcatgt cttaaatatg aactgtctgc      1500
     agaaggagga ttaaaaattt tgaatgttca gaatgtcgat gaaagcttat tgtcagaatt      1560
     tgataatatg gaccttccca tattaacaat caatgaaaac aaagtaggaa atattgaatt      1620
     tgacgaggat ttagactggg aaagcaaaga acaatgtatc tttttaattg acaattatct      1680
     gaatgccaaa cgacctaatg atcctgaagt cgattatgag atgtcgatta gtttaattca      1740
     ctcgcagccc ttttttgtaa atccaagaag gttgtctttt gcagaaaaag atgctgtcaa      1800
     agatatgacc gaaaagcttt tggctgaaaa tattattcgt gaaagtaaat ccccttatgc      1860
     aagtcccatt gtgttagtca aaaaaaagaa tggagattat aggatgtgta tacctattga      1920
     ctatcgagcg ctgaacaaaa taactgttaa ggatcatttt ccacttccat taattgaaga      1980
     taatcttgat cttctgaggg ataaaagggt ttttactctg ttggacttaa aaaatggttt      2040
     tcaccatgtc aaggttgctg aagattctat caaatatacc gcatttgtca ccccttttgg      2100
     acactttgag tatgtccgta tgccatttgg actttgtaat gccccttcga atttccaacg      2160
     ttttgtttcc aagatttttg acaagttgat taaagaaaga aagttgatag cttattttga      2220
     tgacttattg attgctacat caacagtcaa agaaaattta gacatcctgg aggaagtttt      2280
     gtcattgatg attaggaatg atttgcagtt aaaaattgac aagtgtaagt tcttgaaggg      2340
     tgagattacc tatttgggtt acagtataga taaaagaggg attcgcccta acccggtttt      2400
     gacaaaagat atcctggatt acccagttcc gacaaatgta aagcaagtcc aacggttcat      2460
     aggtttggct tcttatttcc gaaagtttgt tgaaaatttt tctctgattg ctagcccttt      2520
     gtatcgcctt ttgaaaaaag atgctgtttt caaatttggt gaagaagaac tgaaatcttt      2580
     ttcgattctg cgtgatcacc tggctgctcg accattatta gccatatatt ccccgaagct      2640
     tgctacggaa ttgcattgcg atgctagtaa ggaaggtttt ggtgctattc ttctccaaaa      2700
     acagaaggat gacaataaat tccaccctgt atttttcttc agtaggaaag ccacaacgtc      2760
     tgaatctaaa cttcacagtt ttgaactcga aacgttggct ataaagtacg cattggaaag      2820
     atttagaatt tatctgcatg ggattaaatt tcgcatcgtc acagactgta atgcagtggc      2880
     tatgactatt tcgaaaaggg atgttagtcc gaaaatagcc cgttgggttt tgttttttga      2940
     gcagttcgat tattcactgg agcatagaaa ttctgagcga atgcaacatg tggatgcatt      3000
     gagtcgcacc attttggctg tcgatgaatt ggtcgataat gctctatcgg tcaagcaagg      3060
     ttctgacccg gacattttga aattaaggga tagtcttgag cgttctgaac atccttattt      3120
     tgagttaagg aatggctttg tctataggaa gacgagtgat ggtgatttaa ggttttatgt      3180
     accttctgat ttaagggatt cagtccttcg cgcttatcac gacaacttag cccatgggag      3240
     tgcgggtaaa acgcttgaga tggttaagag attgtattgg tttcccaaaa tggatacgta      3300
     tgtgaaaagg tatgttggga attgtttgaa gtgtataatg tacaacccga tgagtggcag      3360
     aaaagaggga tttttgcatc caattcctaa gggcgaagtt ccgtttgaaa ccattcatgt      3420
     tgatcactat ggtcctcttc ccaagacgtt cagaggaacg aagtttgtgt ttgtggtcat      3480
     cgacaatttc acaaaattta ctcgtttgtt tgggtgtaaa accaccaatt cgaaagaatg      3540
     cattaagcat ttagatgatt atttccggag ttatagtcgg ccgaaaaagt tgatctccga      3600
     tcgtggctcc tgtttcactt cttcggaatt cgtggatttc ctgtcaaatc tgaatgtgac      3660
     ccatatactg aatgcgactg caacacctcg tgcaaacgga atggtcgaga gagttaatag      3720
     gtctatcacc cctattcttt caaaatttga ttctgattgg gacttaaaat tgaacgtggc      3780
     tgaatttgtt ttcaacaata ctgtaaatag ttcgacgaat gctactcctt ccacattgct      3840
     atttggcatt aatcagaatg ggccagtgca ggacgatttg ggtagtttgg ttcaattaga      3900
     atgcgaccgt gctgttaata tagacgaaat tagaaaacaa gcttctcagt ctcaatccaa      3960
     gacagattcc tataacgaga gttattttaa taaaaaacga aaggaaataa cgcagtataa      4020
     ggagggtgat ctaattgtaa tttttaacaa agatgtgacc cctggagttt ccaaaaaatt      4080
     actaccgaag tttaagggac cgtttgttgt aaaaaaggtt ttgccgaatg ataggttttt      4140
     gattggtgat gtcgacaact gtcaatatgg tagaaacccg tatgtaggag ttatggctcc      4200
     agaacggatg cgtccgtacc ttaaaacttt atagaatgat gactatttct gtatttgaat      4260
     ttttttttta aagttgtatg tttattgtag atttacattg tatttgtgtt tgaaattttc      4320
     ttctgtattt gaattttttt tttaaaagtt gtatgtttat tgtagattta cattgtattt      4380
     gtgtttgaaa ttttcttctg tatttgaatt ttttttttca ttactttttg cctgtcagaa      4440
     tggccgagc                                                              4449
//
ID   Gypsy-22_OrIn-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-153
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1529-1529 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 153 BP; 45 A; 30 C; 31 G; 47 T; 0 other;
     tgtaagaccg taagatgata gcctggtagt gttataacca gaggaaggta acctcgcttt        60
     tacgataaga atgtaccgct cttgccctaa tgagaattaa agactgtgta attgtatccg       120
     aaagtatctt tcatttttcc tggccatcct aca                                    153
//
ID   Gypsy-22_PBa-I repbase;    DNA;    INV; 4997 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4997
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 715-715 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..1114
FT                 /product="Gypsy-22_PBa-I_1p"
FT                 /translation="MKNMAERQAELKGKETVTEEGQEGASGRRVVSARKRA
FT                 CVRTEEPETTPSLEMVLRMTIEELRLLREERAERRRGAEEQGGSVRQSEEH
FT                 ELSIPGQSNPILSLGLGLKLKPDIYDGSVPLREFLSQFELIARANRWGNSE
FT                 KVVVLASCLRGKARSVLEGGTELENSQYSELVSRLELRFGEKLSAQNYYMQ
FT                 FINRKQKFGEDLAALGSDLERLSRLAYPECSPGVQDKIACSQFIVALADGF
FT                 IKQTLQMEGHTSLRVAVERAIAVKIIKENSFPKFQERDRKGKISFEVGHER
FT                 NFLNKGEIFARDYKQNRGKFSNFNSKQKETSGPKRGANECWQCGAKGHFRT
FT                 ECPSLVNSGKGNSGSPSFAAV"
FT   CDS           1072..4050
FT                 /product="Gypsy-22_PBa-I_2p"
FT                 /translation="FREGKLGLAELCSGVTQGSARKCNTARERNFSFGNLS
FT                 GKSGNFCFQGRLDDQNCVFKIDTGSDVSILNKRLVRPGRQQFWVGNRKLRY
FT                 PTGQEVPIDFKTNVKVELGKFSLEFPMYVAEIEDECILGADFLVKVGQNRI
FT                 FNSLFSNDDSGKEGNLSCSRISLPERKIPEFLLDFFNRNSVGLNDLQKKSF
FT                 SEFLEEFQDIFSENIVAGNCSVIEHSISVGKSSPIKQTPRCIPLQMRDEVE
FT                 KILEEMKQQGVIEESHSPWVSPAVMVKKKDGTLRFCVDYRKLNAITEKDCY
FT                 PLPRIDDLLDRLSGNSWFSTLDLKSGYWQVKLRPEDKEKTAFSIGNGLWQF
FT                 TVMPFGLCNAPATFERLMERVLHQILNKICLVYLDDVVIFSKTFEEMLANL
FT                 REVFLRLRAANLKINPKKCSLFGRKVKYLGHEVSEEGISTDSEKIASVQEW
FT                 PVPRNKKQVRSFLGLCSYYRKFVRGFSQIAKPLFSLTEKQCRFVWDEHCQE
FT                 AFVKLKRCLISSPVLSFPIETGKFILDTDASNHGIGAVLSQIQEGKERVIA
FT                 YFSRVLSKTERNYCVTRRELLAIVDSLKSFHHYLYGREFLIRTDHVSLRWL
FT                 MSFRELEGQLARWLERLQQYNFEISHRAGKSHGNADGLSRRPCAESDCNYC
FT                 ARVERKEEENKGEYLGRIVLEGRESKDWRAAQLEDPSIVEILRSKEIGRRP
FT                 LRHEIISGNASSKIYWSQWDSLVIKDGVLCRRWESPDLKTVILQIVVPHKM
FT                 MQQVLEEAHDSPTGGHFGVNKTLEKIRKRFFWATCKQDVEHWIRTCKVCVA
FT                 KKGPAGKGKSAFQIYNVGAPFERVQMDVLGPLPFSSSGNKYLLVVTDCFSK
FT                 WVEAFPLRNIKASTVAEVFVSQIVSRHGVPLEIHTDQGRNFESRMFQELCR
FT                 ILGIKKTRTTPLHPQSNGQVERQHQTLLNYLSKFVSENQRDWDRWVPLGLL
FT                 AYRSSKHEVTGFTPAELNLGRELRLPLDLLRGCPPETE"
XX
SQ   Sequence 4997 BP; 1481 A; 793 C; 1325 G; 1397 T; 1 other;
     tttttggggg ctcgtccggg atatgaaaaa catggcggag cgtcaagcgg aattgaaagg        60
     aaaggaaaca gtgacggagg agggacagga aggagcgtcg gggagacggg ttgtctcggc       120
     caggaagaga gcttgtgtgc gaacggagga accggaaacg actccgagcc tggagatggt       180
     tctccgaatg accattgagg agcttcgcct tcttagagag gagcgagcgg agcggcgacg       240
     cggagcggaa gagcagggag gatcggtgcg gcagtccgag gagcatgaac tatccatacc       300
     aggccagtca aatccaattt taagtctcgg tctcggttta aaattaaagc ccgacatata       360
     tgacgggagt gttcctttgc gagaattttt atctcaattc gaattgattg ctcgggcaaa       420
     tagatgggga aattcggaga aagtggttgt attggcttcc tgtttgagag ggaaggcgcg       480
     ttcagtttta gaggggggaa cggaattgga aaattcgcaa tatagcgaat tagtctctag       540
     actagagtta cgttttgggg aaaaactttc ggcacaaaat tattacatgc agtttataaa       600
     tcggaagcag aaatttgggg aagatttggc tgcgcttggc tcggacttgg agcgtttgtc       660
     tcgtttagcc tatccggagt gctctcctgg cgtacaggat aaaattgcgt gctcgcaatt       720
     tattgtcgcg ttggcagacg gttttattaa gcagaccctt caaatggaag ggcatacatc       780
     tttgagggtc gctgtggaaa gagccatagc ggtaaaaatt attaaagaaa atagttttcc       840
     caaatttcag gagagagatc gaaaggggaa aattagtttt gaggtcggac acgaacggaa       900
     ctttttgaac aaaggagaaa ttttcgcacg tgattacaag caaaatcgcg ggaaatttag       960
     taattttaac agtaaacaaa aggaaacttc cggtcctaaa agaggagcca acgaatgctg      1020
     gcaatgtgga gctaagggac acttccgaac ggagtgccct tcattagtta attcagggaa      1080
     gggaaactcg ggctcgccga gctttgcagc ggtgtaacgc agggctcggc gcggaaatgt      1140
     aataccgcaa gggaaaggaa tttttctttc gggaatttaa gtgggaaatc aggaaatttt      1200
     tgttttcaag gaaggttaga cgatcaaaat tgtgttttca aaattgacac gggctcagat      1260
     gtttcgattc taaataaaag gttggttagg ccgggaaggc aacagttttg ggtagggaat      1320
     agaaaattga gatatccaac tgggcaagaa gttcccattg attttaaaac aaatgtwaaa      1380
     gtcgagttag ggaagttttc cttagaattt ccgatgtatg tggcggaaat tgaggatgaa      1440
     tgcatcttgg gagcagattt tcttgttaaa gtcgggcaga ataggatctt caattcgctc      1500
     tttagtaatg acgattctgg aaaagagggg aacctatctt gttctcgtat tagtctccca      1560
     gaaaggaaaa ttcctgaatt tttattagat ttcttcaata ggaattcggt agggttaaat      1620
     gatttacaaa agaaaagttt ttctgaattt ctcgaggagt ttcaggatat cttttcggaa      1680
     aatattgtag cgggaaattg ctcggtaata gagcactcaa tttctgtagg aaaatcaagt      1740
     cctattaagc agactcctag atgtattccc ttacagatgc gagatgaggt ggagaaaatt      1800
     cttgaagaga tgaaacagca aggggtgatt gaagaatccc acagtccttg ggtttcacct      1860
     gcggttatgg tgaagaagaa ggacgggacg ttgaggttct gtgtggatta cagaaagctc      1920
     aatgcaatca ctgagaagga ttgttaccca ttgccaagaa ttgatgatct tcttgatcga      1980
     ttgtcaggaa attcttggtt ttccacgttg gatttgaaaa gtgggtactg gcaggtgaag      2040
     cttcgtccag aagataagga aaaaacggca ttctcaatag gtaacggttt gtggcaattt      2100
     actgtgatgc catttggatt atgtaatgcc ccggcgactt ttgagaggtt aatggaaagg      2160
     gttcttcatc agatattaaa taaaatctgt ttggtttatt tagatgatgt tgtgattttc      2220
     agtaaaacct ttgaagagat gttggctaat ttacgggaag tttttcttcg tctcagggca      2280
     gcaaatttaa aaataaatcc aaagaaatgt tccctgtttg gaaggaaagt taaatattta      2340
     ggacatgaag tctcggaaga aggaatctct actgactctg aaaagatagc ttccgtacag      2400
     gaatggcctg ttccgcggaa taagaagcaa gttcgtagtt ttttggggtt atgctcctat      2460
     tataggaaat ttgttagagg attttcgcaa attgcaaaac ccctattttc cttgacggag      2520
     aaacagtgta ggtttgtttg ggatgaacat tgtcaggagg catttgtaaa gcttaagcga      2580
     tgtttgattt cttcccctgt cttatccttt ccaatcgaga caggaaaatt cattttggat      2640
     actgacgcct cgaatcatgg cattggtgct gttttatccc agattcaaga aggaaaggag      2700
     agagtaattg cttattttag tagggtgtta agtaaaaccg aaagaaatta ttgtgtaact      2760
     cgtagagagt tgttagcaat agttgactct ttgaaaagtt ttcatcacta tttatatgga      2820
     cgagaattct taataagaac tgaccatgtt tctctccgtt ggttgatgtc ttttagggaa      2880
     ctggaaggtc agttggcccg ctggttggaa cgtcttcagc aatataattt cgaaatttct      2940
     catcgagcag ggaaatcgca tgggaacgct gatggattat caagacgccc ctgtgcggaa      3000
     agtgactgca attattgcgc cagagtggaa agaaaagagg aggaaaacaa aggggaatat      3060
     ttaggaagga tagttttaga gggaagagaa tcgaaggatt ggcgggcagc gcagttagaa      3120
     gatccttcga ttgttgaaat tcttcggagt aaggaaatag gtagacgccc tcttcgacat      3180
     gagattattt ccgggaatgc ttcttcgaaa atttattggt ctcaatggga ttctttggtt      3240
     attaaggatg gagttctttg taggagatgg gagtctcctg atttgaaaac tgttattctt      3300
     caaattgttg ttcctcataa aatgatgcaa caggttttgg aggaggctca tgattctcct      3360
     acagggggac attttggagt aaataaaact cttgaaaaga ttcggaagcg tttcttttgg      3420
     gcgacatgca aacaagatgt agaacattgg atcaggacct gtaaagtttg tgtagctaaa      3480
     aaaggtcctg ctggaaaggg aaaatctgct tttcagattt ataatgtagg tgctcccttt      3540
     gagagggtgc agatggatgt gttaggcccc ttaccgtttt cttcttccgg gaataaatat      3600
     ttattagtag ttactgattg tttctcaaaa tgggtggaag cttttccact gagaaatatc      3660
     aaagctagta cggtggcaga agtctttgta agtcagatag tatctaggca tggagtgcca      3720
     ttggaaatac atacggatca gggaaggaat ttcgaatcgc gaatgtttca ggagttatgt      3780
     cgaattttag gaataaagaa aactcgcact actcctcttc atccacaatc caacggtcag      3840
     gtggaacgac aacatcagac tttgttaaat tatttatcta aatttgtttc agaaaaccag      3900
     agagattggg atcgttgggt ccctttagga ttattagctt acagatcttc taagcatgag      3960
     gtcacaggtt ttactcctgc agagttgaat ttgggtagag aattaagatt gccgttagat      4020
     cttcttcgtg gttgtcctcc tgaaaccgag taatgttccc caagaaggag gatattcatt      4080
     tagattgagg gagagaatga ttcatatcca taatgttgcg agtcaacgta tgaatttaag      4140
     gtcgcaaagg acaaaaatga attacgatcg gaaggatagg cgactaaatt ttgtgcctgg      4200
     ccagaaagtt tggttttata atcctcaaag aatgcgaggt agggctccca agttgcaaag      4260
     tagttgggaa ggaccttatg aggtggttag gaaaatgaac gatgtagttt attgcattcg      4320
     aaaaacgaaa agacataaaa ataaagtagt acatttagat agattagctc catttgagga      4380
     aaggaaaaga atcgaagctg agcctgtaaa tgtgtaaaaa gagatatgta gatatttcat      4440
     ttttggggag ataattaatt tgaaaaaaag ttctttaagt agatactgtt tatgtttatg      4500
     tttcttgttt gaggtttgtt ggcatcgctt taagaggaag atcttctact atctgcccga      4560
     acatccggct aaggaaatct ttttttaaga agtccgcctc gccctcggtt ttttttgaac      4620
     cgtggttttt ccgagggact tagggcaaat gccgaggcgg ggacttgggg tgtccgtaag      4680
     gacgaaaggg tccacggaag cttccccccc ccttgtccga agattcaaga gagaagtgcg      4740
     caagacacaa gcacaagata aagaagcatc acggaagaag aaagaagagg gaagatgacc      4800
     tcgcagcggc acggaacttc cgggaagggt gaagtttggg actggttcgg cgctcggtaa      4860
     cccgcagcag cagctcgggg tagagcagga agccgacaga ttccctgaga gcttcaccat      4920
     ggaagaagaa gccgactttt ctgcgaggga gttccctgga attgtcggga cgacaatttc      4980
     gaagaggagg gggatag                                                     4997
//
ID   Gypsy-22_PBa-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-288
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 716-716 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 288 BP; 52 A; 73 C; 80 G; 83 T; 0 other;
     tgttacgacc gagcggtgtt ccgctcgacg ctaccctcat acgatttcca acctgaagat        60
     cgttccttgc cgacgcggtc gtcaagcggt tgtcaagcgt tgttttggcg agagagtcga       120
     cggcgcggcg cgcgagtttg agccgtgtcg cggcgaatta ttatttaatt gtgaaagctc       180
     ttgttattgc tcccgtgctt cagtgcataa taaagtgtgt ttctttccta aactgttctt       240
     cctttccttg cgtgaggtga cgcgagtgaa cccgccgcga gtgcgaca                    288
//
ID   Gypsy-22_RPr-I repbase;    DNA;    INV; 4943 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, internal region: consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4943
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3429-3429 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           405..1697
FT                 /product="Gypsy-22_RPr-I_1p"
FT                 /translation="MDPYRLLKDELAYELTIRAISGEGTVPDLRKRLVKAL
FT                 QSKVLPIGRLFSSLPAKQEFALCCRKVEALREQTEVIAEDDPNELKRLNTR
FT                 LLHVKLRLERITELEGDELQEQEAMKEEVGRLLRDIKELHVKSEGQIPQMP
FT                 SVSKVGTLTTSAISTEVDASYHPTQPQITREPSGGRDLKLDRWGLKYTADD
FT                 HELSLCSFLAMVEDRRTAKGISKHELFRSASELLGGTALVWYRSKRDTISS
FT                 WDELIARMRQTFLDPDYDYQLMEEIRKRTQGPQESIAIYIARMQALFARLS
FT                 RPLTEEEKFEIIKRNVKREYRALLPLTSSSNIEELETVLRNLEVGATMASR
FT                 YEEPPLKGSLEPDLAYRRPPGKSVKANPIVTPITSPTPSAEQKNSRTTLRC
FT                 WTCHQIGHVSRLCPQRNRVEASCPHCKKSGNAKADRA"
FT   CDS           1730..4879
FT                 /product="Gypsy-22_RPr-I_2p"
FT                 /translation="MSTTDPEWREWVSVVTNFMQGKTARPLLQMAEKQDGR
FT                 PHLRIFIFGLGFTALLDSGATRSLIGGAGWRKLKNLGLPLKKEGSLKVTTA
FT                 DGNRCEVLGSVEIPVELSGKIKIIEFLIVPALVNSVILGVDFWESMSIVPD
FT                 LKNRKWTFSETVNEDVQVSAALVERANLTLEQEKDLHDFMQGWRTISTKSD
FT                 GTDLVQHTIDTGDNKPIKQRYYPVSPVIQAIINEELDKMLEAGIVERSSSP
FT                 WSSPVVIVKKPNGEHRFCVDFRKLNAVTKKDAYPLPYVSHILDKLREARYL
FT                 SSLDLKSAYWQVKVEKEDREKTAFTVPGRGLFQFIRMPFGLHNAPATWQRL
FT                 IDSVLGPELEPKVFVYLDDIVVATQDFKDHLETLELVLRKLQEAGLAVNWE
FT                 KAQVCRAELKYLGYIVDQHGLHVDPEKVAAILNFPQPRTVKQVRRFLGLAS
FT                 WYRRFVPHFATISSPLTELTKKNKRWNWGEDQTRAFMELKNILVSAPVLTC
FT                 PDFSKPFLLQTDASASGLGAILSQVFEDGEKPIAYASRSLTKNEKNFSVTE
FT                 QECLAVLWAIEKFRPYLEGTEFNVVTDHHSLVWLLNLKDPQGRLARWALKL
FT                 QQYSFTIQHRPGKQHAAADALSRINEELVGSIDLSFDDVDEWYASMLRKVK
FT                 KEPAKYPNWRIEESRKLFKRVAEGQNKMLSDQLSSWKLVVPKRQRLEVLQE
FT                 YHDSPLSGHLGSWKTLQRVKEQYYWPAMAADIARYVARCSICLQNKPLQQQ
FT                 PAGLMGKSRLVAEPWQVISTDLMGPLPLSSKQNRYLLVVVDYFTKYSILLP
FT                 LRQATAKTVTRLIEEQVILRFGAPQRVICDNGTQFASHEFKNLIVDYGGKI
FT                 WFTAAYHPQANPTERANRVIKTMMASYVKDNHRTWDREIAKLSFALQTAVH
FT                 EATGFTPAYLNFGRELKRSGKEYAELDSKEEIPGSSREERLEQLAKMPLLF
FT                 EEVKDRLARAYEKAARNYNLRRRPAKFQAGEIVWKKSHAQSDASRYFANKL
FT                 APKFQQCRIKRMTSNVIAELEDLEGRPLGCWHVDQLKPHPHPTP"
XX
SQ   Sequence 4943 BP; 1438 A; 1045 C; 1209 G; 1251 T; 0 other;
     tattttctgg cgcccaacgt ggggcataat agaaataatt tttttctaaa atctatttta        60
     cgttttaatt atttttaaaa taattttatt ttaagaaata ggtccaaata attgtctcgc       120
     ctaaattctt tttcattttc ccgactgtgg aagttattta tttttattgt caatctaatt       180
     ttgttcgtgt aacctgactt agtttaacaa ataattttga tttttgtttt gaagttttgt       240
     ttatttactt ttgcctgttt ttttttaata acatactcaa tttatttact caagtatacg       300
     gtattaaatt atattttact tatattgata tagtggtgcc attcttaaat attttattta       360
     attcctaatt ttcattggtc cttttctttt ttaaatttat tttcatggat ccttacagat       420
     tattaaagga cgagttggcc tatgagctaa ccattagggc tatttccggt gagggtacag       480
     tccccgattt aagaaaacgt ttagttaagg ctctgcaatc taaggtactg cctatcggaa       540
     gactgttttc tagtctacct gcaaaacagg aatttgcact atgctgtcgg aaagttgagg       600
     ctcttaggga acaaacggaa gttattgcgg aagatgatcc caacgaactt aagcgactca       660
     atactcgact tcttcatgtt aagctccgtt tagaaaggat caccgagctc gagggtgatg       720
     aattacagga acaggaagct atgaaggagg aagtaggccg gcttttgaga gatattaaag       780
     aacttcacgt aaagtctgaa gggcaaatcc cacagatgcc atccgtatca aaggtaggaa       840
     cattaaccac ctctgcaatt tccacggaag tagatgccag ttatcatcca actcaaccac       900
     agatcacgcg tgagcccagc ggcgggagag acttaaagct cgaccgatgg ggccttaaat       960
     acactgccga tgaccacgaa ttgtcactat gctcttttct ggcaatggtc gaagatcgaa      1020
     ggacagccaa gggaatttct aaacatgaac ttttccgttc ggccagcgag ttgttaggag      1080
     gcaccgcact tgtctggtat aggtcaaagc gggacacaat aagtagctgg gatgaactca      1140
     tagctaggat gaggcaaacc ttcttggatc cagactacga ttatcagttg atggaggaaa      1200
     ttcgcaagcg tacccaagga cctcaggaaa gcatagcgat ctacattgcg aggatgcaag      1260
     cgttgttcgc ccgactttcc aggcctctca ctgaggagga aaaattcgaa atcatcaagc      1320
     gcaatgtaaa aagagaatat cgcgcgctgc ttcctttgac atcttcaagt aatattgaag      1380
     aattggagac ggtgttgaga aatctggaag ttggagctac catggcctct cgctatgagg      1440
     agccacctct taagggatcc ttggagcctg accttgccta tcgcagacca ccagggaaaa      1500
     gcgtaaaggc gaatccgata gttacaccca tcacctcccc cacaccatca gcggagcaga      1560
     agaattcaag aactacattg agatgttgga cttgtcatca gatcggccat gtatctaggc      1620
     tgtgtccaca aagaaaccga gtcgaagcaa gctgcccaca ctgcaagaag tcgggaaacg      1680
     ccaaggccga ccgagcataa gtggactgag ctcgagtcgt gcgccaaaga tgtccaccac      1740
     agatccggag tggcgtgaat gggtttcagt ggtgacaaat tttatgcaag gcaaaactgc      1800
     gagaccacta cttcagatgg cagaaaagca agatggaagg ccgcatttgc gaattttcat      1860
     cttcgggtta gggtttacag ccttgttaga ctcaggagcc acacgttcgc ttattggagg      1920
     agcaggttgg agaaagttaa agaatttggg actacctttg aaaaaagaag gttcactaaa      1980
     agtcacgaca gcagacggaa atcgctgcga ggttcttggt tcggtggaaa tccctgtgga      2040
     attatctgga aagataaaga taattgaatt cctcatagtc cctgcgttgg tgaattcagt      2100
     aatcttagga gtggatttct gggaatctat gagtattgtt ccagacttga aaaataggaa      2160
     gtggaccttt agtgaaactg ttaatgagga tgtccaggtt tctgcggcct tggtagaaag      2220
     agcgaatttg acgctagaac aagagaaaga tctccatgat ttcatgcaag gttggcgaac      2280
     aatatcaact aagtcagatg gcactgatct cgtacagcac acaatcgata ctggtgacaa      2340
     caagcccata aaacaaaggt attacccagt atctcctgta atccaggcca taatcaacga      2400
     ggagttggac aagatgttgg aagccgggat agttgaacga tcctctagtc cgtggtcctc      2460
     gccggttgtt attgtgaaga aaccgaatgg cgagcacagg ttttgcgtcg atttccgaaa      2520
     gcttaatgct gtcacaaaga aagacgcgta cccgttgcca tatgtgtctc acatattgga      2580
     taagttgaga gaggcgaggt acctatcatc gttggatttg aagtcagcgt attggcaggt      2640
     gaaggtggaa aaagaagacc gagaaaagac agccttcact gttccgggaa gaggtctttt      2700
     tcaatttata cgcatgcctt ttggtctcca taatgcccca gcgacgtggc aacgtttgat      2760
     tgattccgtc ctaggaccag agttggaacc aaaagtattc gtatatcttg atgacatcgt      2820
     tgtggcaact caggatttta aagaccatct ggagacattg gagttggtgc tgagaaaact      2880
     tcaggaggca gggttagcgg tcaactggga gaaggcccaa gtttgtagag cggaactaaa      2940
     gtatttgggc tacattgtgg accagcacgg cttacacgta gacccggaga aggtggctgc      3000
     catattaaac tttcctcagc ctcgtacggt caagcaagtc aggaggttct taggtctcgc      3060
     tagttggtac aggagattcg ttccgcattt tgccaccata agctcacctt taacagagtt      3120
     gacgaaaaag aacaagcgct ggaattgggg agaggatcaa accagagcgt ttatggaact      3180
     taaaaacatc ttagtttctg cgccggtgct gacttgccct gatttcagta agcccttctt      3240
     actccagacg gatgcctctg cttcgggatt gggagccata ctttcccaag tgtttgaaga      3300
     tggggagaag ccaatcgctt atgccagccg gagtttgacg aaaaacgaga agaacttctc      3360
     tgtaacggaa caggaatgtt tggctgtgct gtgggcaata gagaagtttc gtccatacct      3420
     ggaaggaaca gagtttaacg tggtaaccga tcaccattct ctcgtctggc tccttaactt      3480
     aaaagaccct caggggaggc tagcccgctg ggcactgaag ctgcaacagt attccttcac      3540
     catccagcat cgacctggga aacagcatgc ggcggccgac gcattatcca ggataaatga      3600
     agagctggtg ggaagtattg acctaagttt tgatgacgtg gatgagtggt acgcttcaat      3660
     gctccgcaag gtgaaaaaag aaccagctaa gtacccgaac tggaggatag aagaaagcag      3720
     gaagctattc aagcgagtgg cggaagggca aaacaagatg ttgagcgacc aactgtcatc      3780
     ttggaaactt gtagttccga aaagacaacg tcttgaggta ctgcaagagt accatgatag      3840
     tccactgtcc ggacatctgg gaagttggaa aactctccag cgagtaaaag agcaatacta      3900
     ttggcctgca atggcggcag atatagcgcg ctatgtagcc agatgcagca tctgcctcca      3960
     aaacaagcct ttgcaacaac aacctgcagg actaatgggc aaatctagac ttgtcgccga      4020
     accttggcaa gtcatttcaa cagatctaat gggaccgcta cctctgtcat caaaacagaa      4080
     ccgatatctt ttggtggtag tggattactt caccaaatac agcatccttc tacccttaag      4140
     gcaagctact gcaaagactg tcaccaggct aatcgaagaa caagtcatct tacggtttgg      4200
     agctcctcag cgagtgatat gcgacaatgg aacgcagttt gccagtcatg agtttaaaaa      4260
     tttaattgta gattacggtg ggaagatctg gtttacggcc gcctaccatc cacaggccaa      4320
     tccaaccgaa cgggccaacc gcgtcataaa gacgatgatg gcatcctacg tcaaggacaa      4380
     ccaccggact tgggatcggg aaatagccaa gctcagcttt gctctgcaaa cagcggtgca      4440
     cgaggccacc gggtttacgc cggcctatct caacttcggt cgagaattga agaggtcggg      4500
     taaagaatac gcagaattgg actccaaaga agagattcct gggagtagta gagaggaacg      4560
     attggagcag ctagcaaaga tgccgcttct tttcgaagaa gttaaagacc gtttggcgag      4620
     ggcttacgaa aaggcagcaa gaaattataa tctacgaaga aggcctgcca aatttcaagc      4680
     cggtgaaata gtctggaaga agagccatgc gcagtcggac gcgagtaggt acttcgcaaa      4740
     taaacttgca cctaaattcc agcagtgcag aattaaaagg atgacgtcaa acgtaattgc      4800
     agagttggaa gacttggagg gcaggccctt aggttgctgg cacgtggacc aattgaaacc      4860
     ccatccccat cccactccct aatcccgttc cgttcatttc cttttccatt cccgacgttc      4920
     ctctccggag gcaagggggg aat                                              4943
//
ID   Gypsy-22_RPr-LTR repbase;    DNA;    INV; 1300 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1300
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3430-3430 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1300 BP; 343 A; 193 C; 268 G; 496 T; 0 other;
     tgttaccgaa taaaattcgg aaacaaaaat tggtaaccat tttaatttca aataatgtta        60
     aataattgga tttaatgaca agtgcatgcc aagaatacat ttatgtgtac gtattgatat       120
     gtacaataga gtataataga gtaaagttgg acttaggttt gtcggcgaag atgtaaacac       180
     agcggcgcgt gggggggtgc gcggagctcg cgagagagat agtgtgagtg aagtagcgct       240
     tgagagaagt ggtgcactgg attccctttt tatcggcttg ccggatgtga ttttctaatt       300
     tttttcgtat taggaaaatt gggaaaattc cgtaaagtga gtgcgttact agtggcatag       360
     gacagccctc tggtaaggtt tcccatcgag gggattacgc tctacggaag aaacaacgga       420
     aagggaagaa ggaaaagcac aggaaaatct tcatgtggga tcccgaagaa agaagacggc       480
     gcttcggaac actgtaaata gtcctttact ctattaaaga aaaaaaagtc aggcttgggg       540
     tgagttttct gttattttga acatttaaat aagataattt cccgtgtagg agaagggttc       600
     ttacaggcta tttatagtta cagaatttta tttcttttgt tttattctgt atcatttttc       660
     ctagtttgat ttattgtgtt gttgtatata atttttttta tattaggctt ttcttttaga       720
     aaagtagttt cttttattat ttgtaatttc ttttcatttt aattggttta aaagtttcag       780
     gaagcttccg gttgtgtttt ttttccttaa gaaaggtttt tttttccaat gataaataac       840
     agttttcatg taaatacgtt ttttttgtaa atatgctttt tttttattta gggagtaaga       900
     ttgttgtttc cagatagatt attaaatacc tagttacgta attaacgtaa cgttcgaact       960
     gaaccagtaa acagagctgc atttgtcatt atttttgttt tttttatgct taatagtttt      1020
     ttttgttatt atacgtatta cttactccca cttgcctttt tgtttgtttt tttttacctt      1080
     cgtcccctta ccccgtggat ttcgccgttt gctgcggaag tctattttta aacggcgtgg      1140
     cgcccaagca ccacatatac acctatatat tttctttttt tttgtttttg ttgatcttat      1200
     tttacttttc ttggtttata ttttttttgt gtgtgtctac acctcggccc acccccgtct      1260
     ccacggaagc tacgccgggg caacggagtg tagggtaaca                            1300
//
ID   Gypsy-22_SI-I repbase;    DNA;    INV; 5160 BP.
XX
AC   AEAQ01030800;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_SI_;
KW   Gypsy-22_SI-LTR; Gypsy-22_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-5160
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030800; Positions    5824     665.
XX
CC   Positions [4038-4511] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1115..4108
FT                 /product="Gypsy-22_SI-I_1p"
FT                 /translation="MRLWVQRVTQVARIHGAPEDVTLLAATSRLTKAARKW
FT                 YDHGKGPMLASWEAFKEAILKRFERRTLHYLALRKVEARRWNHQKESFHEY
FT                 ASEKLALMYDLELSERETIHLLIGGIASRLLRGTASALKVEAVDDFLEEMS
FT                 WITAATAEAAERSDGGRKAPMKPKEQCKGCGRRGHASQDCRSREVTCFGCK
FT                 EKGHYQTDCPKRKKERATGAPGTSTSSAVAAVEDVSTVAALVSRSKTLYVS
FT                 GAPIKIVALNQQACSLFALIDTGSPVSFVRRDVFAKYFRSGNAKVESVGQT
FT                 YYAVNDTPVEICGTITAAIEFERLPGQAFHAKLNILKTSRTSAHLIIGRDF
FT                 LNDQSIEVIYKPNVNKVEEGREDFPAELLQIGVMEAAGENSLLDEVETDFD
FT                 AEVTGELKRTLADVEQSPTSIVADEYFVTVKLKDDSTYAYAPRKFAHSERK
FT                 QIQQITDDLLTRRIIQKSISPYCARIVPVRKKNGNLRLCVDLRPLNDRVVK
FT                 QNFPFPLIEDCIARLAGKTVLSFLDIRDGFLQIKIHPEHYKYFSFATPDGQ
FT                 FEFTRLPFGYCEAPAEFQKRLAQILERFIRNDEVIVYMDDILIATTTVEQN
FT                 LKILKEVLLELKSHNFEINYDKCQFLRRKIEYLGYMLADGKITLSDRHTQS
FT                 IRNFTKPRNEFEVQRFLGLTSYFRKFIRNFATKAQPLYNLLKKTSKFEFDA
FT                 QCEETFETLKRELTIYPILRIYNPAVETQLHTDASSVGLGAILLQKQGGDG
FT                 WFPVAYFSQATKAEANYHSFELEMLAIVRAVERFNIYLAGIEFTVVTDCNA
FT                 LVYAVNKANLNPRIARWTLQLQNYRFKLIHRAGKQMTHVDALSRQVGYLEA
FT                 LPLERELEVRQFQDPQLKEIMEQLEFRDNEKFELIDGLLYRKGSDRPRFVV
FT                 PSSMTNNIIRIYHDEIDGPLRGGKNSPRYIQVVLVFLNEKAYSRIHRKLCN
FT                 LPNGRQIPAFEGGGNAGDLRRDRPMRNFTRRSFRSAGSDRGGI"
FT   CDS           3876..4898
FT                 /product="Gypsy-22_SI-I_2p"
FT                 /translation="MAHCGAEKTHHGIYKSYWFSSMRKRIREYIENCVICL
FT                 MADKSPHSREGEMQVTSGATGPCEILHADHFDPLEVTGGGFRHILLIVDTF
FT                 TRFTWLFAVKSTGSKEAIKHLKSIFQTFGKPKEIVTDRGTSFTSNEFAGFL
FT                 EKHKIKQRKVAVASPWANGIVERVNRFLKSSLKKLIDNPADWRTKLSRAQY
FT                 VINNTAHSGIRGTPSKLLLGYEQREHSDAALVSLINKLAEIDRNFLEERET
FT                 ARSNEEEATEKLRQYNKEYYDKRHGKPTMYHTGQFVMIRDRQPKPGENRKL
FT                 KPEYKGPYAIAKVLRNHRYVVEEIPGLNVPPRPHNSVLSPDKIKPWIKM"
XX
SQ   Sequence 5160 BP; 1499 A; 1231 C; 1460 G; 970 T; 0 other;
     gcgagaagct gccagggggt cgagcccgag cgagcgagca ataacgatta tatacccggt        60
     catccgacaa cctgtatcat atatatcgga gaataaaaga ctacttcaac ctaacaccaa       120
     atactctccg tcatcatttt aattatccta cagctcagaa gtgggattcg aacgcgtatc       180
     ctccgcgcga agaatcgaga gcatcgaacc gggcaaagtt cgcgtaacgg gcaggagtga       240
     gtccggaata atctcgcgtt tagagcgatc cgtgtggtaa ccggaatagt gtaccgcgat       300
     tcggggcagc tacggctgag agaggtcggc gatcttgcga ggagatccgc gtggcgagat       360
     aacgtgcggc cgcgatcgcg cgtaacgaaa gagacgccac gaggtacgcg tgtgaccacg       420
     cgtaggacgg tacgtgatcg cgcgctgaag tgtagcggtt cccgcgcgag gaaaaagtga       480
     aagaagatcg agaagatgcc acgagcgacc aacgccagta aaagggcggg acaggggtcg       540
     tcggacgata ttcccgaaga agacgaggtg gacgccaacg gagcgctcga cgtggaaatg       600
     gagcgcttaa gggcggaggc acaagctctc gggctacccg cgacagggag tcgcggagaa       660
     ttgctcgcag caatagcggc gcgcttggcg agacgcgggt cgagggacgg actctcggtg       720
     gccggcagta gccgggccga atccgtagat cagccgttgc cagagttcgg cgcggggcac       780
     atggagcagc caagtgccgc cgcggccgac gggcaaagcc ccaccgcgaa tcagaatgcg       840
     cggccggtcg agctggcgca agtgctcgcc ctcatgcaag gccagatgca acagcaggct       900
     cagatgttgc aacaactgat gctcaccatg gcgggcggga cgaggatccc ggggactccc       960
     ccgatggcag aaatcagtga ggagcggcag gttagccgtc agacgagcgg cagccggatg      1020
     ccctcgcgag cgacagcggt gtcaacggcg aacccggggc aggcagctgc tatcgccgca      1080
     aatcccggag ttcgccggaa cggagcaaga caacatgcgg ctgtgggtgc agcgggtgac      1140
     gcaggtggcg cggatacacg gagcgcccga ggacgtcacg ctgttggccg ccaccagccg      1200
     gcttaccaaa gcggccagga aatggtacga ccatgggaaa ggtcccatgt tagcctcttg      1260
     ggaggcgttc aaggaagcga ttttaaagcg ctttgaacgg agaacgctcc actacctcgc      1320
     gctcaggaag gtcgaggcca ggaggtggaa tcatcagaaa gaatcattcc acgagtacgc      1380
     gtcagagaaa ctggcgctga tgtacgacct ggaattgtca gaaagggaga ccatacatct      1440
     cctgatcggg ggcattgcca gccgattgtt acgaggaact gcatcagccc tgaaggtgga      1500
     ggcagtggat gacttcctcg aggagatgtc gtggatcacc gccgcgaccg cggaggccgc      1560
     ggagagaagc gacggcggca ggaaggcgcc gatgaagccg aaggagcagt gcaaaggttg      1620
     cggcaggaga ggccacgcca gccaggactg cagatccaga gaggtgacct gcttcggctg      1680
     caaagagaag ggtcactacc aaacggactg cccgaagagg aaaaaggagc gggcaacggg      1740
     cgcaccaggg acatccacat catcggcggt agcggccgtg gaagatgtgt caacggtagc      1800
     agcgctcgtg agtcgatcaa aaactttata cgtaagtggc gcaccgatta aaattgtcgc      1860
     gttgaatcag caggcgtgct cattgtttgc gctgatagat accggcagtc cggtctcgtt      1920
     cgttaggcgg gacgtgttcg cgaaatattt ccggagcggg aatgcgaagg tcgaatccgt      1980
     ggggcaaacg tactacgcgg taaacgacac gccggtggaa atatgcggca cgataacagc      2040
     agcgatcgag ttcgaacggt tgcccgggca agcattccac gcgaagttga atattttgaa      2100
     aacaagtcga acaagcgcac acttgataat aggtcgcgat ttcctcaatg accagagcat      2160
     agaggtgatt tataaaccga acgtaaacaa ggtcgaggaa gggcgagaag attttcccgc      2220
     ggaattattg cagatcggag taatggaagc tgcgggcgaa aatagtctcc tagatgaagt      2280
     agagacagac ttcgacgccg aagtcaccgg cgagctaaag agaacgctgg ccgacgtaga      2340
     gcagagtccg acttcgatcg ttgctgacga atatttcgta acagtaaaac taaaagacga      2400
     ttcgacatac gcgtacgcgc ctaggaaatt cgcgcattca gaacgaaaac aaatacagca      2460
     gatcacggac gacctgctga cgcgaagaat tatccaaaag agtatttcac cgtattgcgc      2520
     gcggatcgtg ccggtgcgga agaagaatgg caatctgcgg ctatgcgtgg acctgcggcc      2580
     attgaacgat cgagtggtga agcagaattt tcccttcccg ctgatcgaag attgcatcgc      2640
     cagactggcg ggcaaaacag tattatcttt tctcgatatt cgggacggat ttctacaaat      2700
     aaaaatccac ccggaacatt acaaatattt ttcgttcgcg acaccggacg gtcaattcga      2760
     gtttacaaga ttgccattcg gatactgcga ggcgccggcc gagttccaaa agagattggc      2820
     acaaattctg gaacgcttta taagaaacga cgaggttatc gtctacatgg acgatatcct      2880
     catcgccacc accacagttg agcaaaatct gaaaatctta aaagaagtac tgctagaatt      2940
     gaaaagccat aatttcgaga taaattacga caagtgccaa tttctacgac ggaagattga      3000
     gtacctcggt tacatgcttg ccgacggcaa gataactttg agcgaccgac atactcagtc      3060
     tatccggaat ttcacaaaac cgagaaacga gttcgaggta cagcggttcc tcgggctcac      3120
     cagctacttc agaaagttca ttcggaactt tgcgactaag gcacagccgt tgtacaacct      3180
     gttaaagaaa acgtcgaagt tcgagttcga cgcgcaatgc gaggagacat tcgaaacatt      3240
     gaaaagagag ctgacgatat atccgattct tcggatatat aacccagcgg ttgagacaca      3300
     gctgcatacc gacgcgagct ccgtcgggct aggcgcaatc ctgctgcaaa aacagggcgg      3360
     cgatggttgg tttccagtag cgtattttag tcaggcgact aaagcggaag ccaactatca      3420
     cagcttcgag ctggaaatgt tggccatcgt cagggccgtc gagcggttca acatttacct      3480
     cgcaggcatc gagttcacgg tggttacgga ttgtaacgcg cttgtctacg ccgtgaacaa      3540
     agccaacttg aaccctcgca tcgcgcgctg gacgcttcaa ctacagaact atagatttaa      3600
     actgatacac cgagcgggca agcagatgac gcacgttgac gctctgagcc gtcaggtagg      3660
     gtacctggag gcgctgcccc tcgagagaga gctcgaggtc aggcaattcc aggacccaca      3720
     attaaaggaa ataatggaac agctcgagtt ccgggataac gaaaagttcg agctgatcga      3780
     cgggctgcta taccggaaag gctcggaccg tccacgtttc gtcgtgccca gctcaatgac      3840
     gaacaacata atccgaatat accatgatga gatagatggc ccactgcggg gcggaaaaaa      3900
     ctcaccacgg tatatacaag tcgtactggt tttcctcaat gagaaagcgt attcgagaat      3960
     acatagaaaa ttgtgtaatc tgcctaatgg cagacaaatc cccgcattcg agggaggggg      4020
     aaatgcaggt gacctcaggc gcgaccggcc catgcgaaat tttacacgca gatcatttcg      4080
     atccgctgga agtgacaggg gggggattta gacacatcct gttgatagtt gacactttta      4140
     cacgcttcac gtggctcttt gcagtcaagt cgaccggaag caaagaggca atcaagcact      4200
     tgaaatctat ctttcaaaca ttcggtaaac cgaaagagat cgtaacggac agaggcacct      4260
     cgtttacctc caacgaattt gccgggtttc tagaaaagca taaaatcaag caacgcaaag      4320
     tagccgtagc ttcgccatgg gccaacggca tagtagaaag ggtcaatcga tttcttaagt      4380
     cgtcccttaa gaaactgatc gacaacccgg ccgactggag gacgaaactt agcagggcgc      4440
     aatacgtaat aaataatacc gcgcactcgg ggatccgagg caccccatcg aagttgctac      4500
     tcggatacga gcagcgagaa cactccgatg cggccttagt aagcctaata aataaattag      4560
     cagaaatcga ccgaaatttc ctcgaggagc gagaaaccgc gcgaagtaac gaggaggagg      4620
     caacggaaaa actaaggcaa tataacaaag aatattatga taagagacat ggtaaaccca      4680
     ccatgtatca cacgggtcaa tttgtcatga tacgcgaccg gcagccaaaa ccgggggaaa      4740
     accgcaaact aaaaccggag tacaaagggc catacgccat cgcgaaagtt ttgagaaacc      4800
     ataggtacgt ggttgaggag atacctggtc tcaatgttcc accgagacca cataattcgg      4860
     tactatcacc cgacaaaata aagccatgga tcaaaatgta agcgcgtggc ttagaggtaa      4920
     acacttagac ttaattacat aagttagcat taattagaat aagcgttaca atttaatagt      4980
     ttaaaggtaa atacttagac ttaattacat aagttagcat taaataaaat aaatgttaca      5040
     atcagttagt agtaaagaag aaaaaaaagg ggagagggaa aagaaataat aagatgtata      5100
     tatgtatatg cgtttcggtc acacagactc gagacgagcg taaagtcagg ctggccgagc      5160
//
ID   Gypsy-22_SI-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   AEAQ01030800;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_SI_;
KW   Gypsy-22_SI-I; Gypsy-22_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-133
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01030800; Positions     664     532.
XX
SQ   Sequence 133 BP; 40 A; 20 C; 45 G; 28 T; 0 other;
     tgtaagaaat ggagatgtaa taagatgtca tgcgtggcca gatggcacta gccggcggac        60
     gcgctatagg aatttgccta ttttgtacgt taggaaggag aaggagaagg ggaatcgcga       120
     ggattccaga gca                                                          133
//
ID   Gypsy-22_SiCu-I repbase;    DNA;    INV; 5662 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5662
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5045-5045 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..1622
FT                 /product="Gypsy-22_SiCu-I_1p"
FT                 /note="gag."
FT                 /translation="MSDQGESSAAPNEGRRVFRASTIAKRNSGPPPVKRKR
FT                 TTESSGQSTSASRGTGATSSRGTRRGRGSRAATTRRNPPPSPPPTMSAPAI
FT                 PADVTAALSPTKLSQLQAWVNGLSTALRPTINLPPVKVRQINSHLKPPVYN
FT                 SMKKTAETYIEELEAFFKCQGLEEAEFVEVLPTALEDHLKSWLRNKKTAGY
FT                 TWAQFKADFKGRYDSEATQHQRQHHLMTRRQREDEPVEAFIWEMVDLSKQV
FT                 YPNESTAATVTRCREALVPRLKAAVGMLATLTPEGLIDRCQTAIKDLRHLD
FT                 RAEGKRSKLPPMHPYTGENNRRFNQQQNGRYNEGFKDKPYNNQQANYGEKR
FT                 DRPASQDNQKAASASNQQHHRGSNSGNNGYADKRQFRQQTRGTYGRRPPGS
FT                 TSYYHRDMECYQCRKIGHIAANCPTTAFFCNDKEGQEDNDHTKVQSEEDAD
FT                 HLNKDGRH"
FT   CDS           1541..5050
FT                 /product="Gypsy-22_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QRRTRGQRPHKGSVRRRCRSFKQGWETLASTPACALR
FT                 TSNDGVPSISLFSEGSSIPSYIDNGTEHCLIRKSLALKLVKTFKAVREIGM
FT                 VCMNGQKISPIGSVNLNIHIGHKKINHNFFVFEKLPYPLFIGRDFIRKSDM
FT                 IIHENANHFWFNDKSEEKYTLRNIKGRSCYMLHPSNIHTLTDSVHNRVQEF
FT                 LKKYPSVARKDGSLGRTNVVKHKIEITSEKSINVTPIFYPPKYSKEIATQI
FT                 EDLLKKGLIKEVEKSNYNANIVLAPKPNNKVRMTVGYKKLNSITKDNFYPM
FT                 HKASYILKRLPNGGYYSKIDCNSGFWQIAMDEESVQYTTFNFEGRLFQFLV
FT                 MPFGLKNSGASFVYLMNTVLQGLIGKSCFVYVDDIIVFSKNIDDHFIHLNE
FT                 VFKRLEEAGLSISLEKSQFCLREVTFLGHLVTQNGIKMQPEKVRAIVDLPV
FT                 PTKKDDLHTFLGMCAWYQSYIPKFSTIAEPLYRILSKRASWRWGNEQQEAF
FT                 EKLKLELISDRILCSINYDHPIVIKTDASNVGLGGILVQYINGKEKVIHYA
FT                 SKMLNKSERLLHACEKELLGVLWAVKKFKEYVHGEDFYIVTDNQALKYLQK
FT                 FKDENTKLGRWALQLAEYSDKIRHVSGKDNTVADALSRNPIPSNAEEDDAL
FT                 GDDPDVMFTPVFAVFESGPNLQELREEQEKDPEVKRIKQEISSCQLSAASD
FT                 GGYVVKDDILFKKVQKSLDIRRRKKKSRSTLSNGTETATPQPETRQNAAGS
FT                 KGTTMSSTGQQIGSIDIIEVPVIPVSLRSKILNMIHDCPEAGHFGVKKTRL
FT                 RATSRVFWKGMCKDIKEYVRSCDICQRVKYSNQKPAGLMGNAQLAHKIFEK
FT                 IYVDFLGPFPVSAKRNQFLLVMQDEVSKWVELFPMRVAKAEKVIEVFKDVF
FT                 YRFGFPKMIVSDNGSQFTSKVMKRFCTEKGIDHRFLSTYHPQQNQSERVNR
FT                 TLVPMLSAFANDKQSHWDKYIPEFGLALRTAIHDVTGVSPAMLNLGREIMM
FT                 PFDRAFQNNVDDFDVNMFRKLPEMMKNVIHTVRENMISSRQENKKYYDEKH
FT                 RFVKYDVGQRILVRSHILSCKDKGISKKLCLNWVGPFKIAKQINDVVYLIS
FT                 DEQGKILGKKHVSHLKAYVERSSYINHFIRQHSRMKTILMIFQIFQEGQVE
FT                 QAINLVNTDKC"
XX
SQ   Sequence 5662 BP; 1941 A; 1008 C; 1233 G; 1480 T; 0 other;
     aaattggcgc ccaaccaacg gaatactgca acaagtgaag actgaagatt actaattatc        60
     ctttggtgag actagagtaa atggtggatt ggtaaaagta taattaatat ttttgggaag       120
     tgtgaaatat tatcggggct gttgaaatga gtattaagtg aatagaatgt gtgagttgaa       180
     gactgacaga gcggattctt gtcagttttc ctgtgtgtgt gtattttttg agtttatttt       240
     gcagctgtgt cagatgttga tgaatgtctg accaggggga gtcatcagca gcgcccaacg       300
     aaggaagacg tgtgtttcga gcttccacca ttgccaagag gaatagtggt ccacctccag       360
     tgaaacgaaa acggacaaca gagtcatcag gtcagagtac cagtgcttct agaggaacag       420
     gagcaacaag ttcaagaggg acgagacgag gacgtgggag tagagcagca actacaagaa       480
     ggaatccacc tccctctcct ccacctacca tgtcggcacc agcgatcccg gcagacgtga       540
     cagcggccct gtcacccaca aagttatcac agttacaggc atgggtcaac ggactcagta       600
     cagcgttaag acctacaatc aatctacctc cagttaaagt aagacaaatt aattctcacc       660
     ttaagccacc cgtgtacaat tcaatgaaga aaactgcaga aacatatatt gaggaattgg       720
     aagcattctt taaatgtcaa gggttagaag aagcagaatt tgttgaagtt ttacccacag       780
     ctttagaaga tcatctcaaa tcctggctaa gaaacaagaa gacagcagga tacacatggg       840
     ctcagttcaa agcagatttc aaagggcgtt acgacagtga agcgactcaa caccagcgac       900
     agcatcatct catgacaaga agacagcgtg aggatgaacc tgtggaagca ttcatatggg       960
     aaatggtcga cttatcaaag caagtttacc cgaatgaatc aacagcagca acggttacaa      1020
     gatgcagaga agcgcttgtc ccgaggttga aagccgctgt aggaatgtta gcgactctca      1080
     ccccggaagg attaatcgac cgttgtcaga cagcaattaa ggacctgagg catctcgaca      1140
     gagctgaagg caagagaagt aaactacctc ccatgcatcc atacaccggt gaaaataata      1200
     gaagattcaa tcaacagcaa aacggtcgct acaacgaagg ttttaaggat aagccctaca      1260
     acaatcaaca agcaaattat ggagagaaaa gagatcgtcc agctagtcaa gataatcaga      1320
     aagcagcatc agcatcgaat cagcagcatc atcgtgggtc aaatagtggg aacaatggat      1380
     atgcggacaa aaggcaattt cgacagcaga caaggggaac gtacggaaga aggccaccgg      1440
     gttccacctc atattaccac agggacatgg agtgttatca atgtaggaag attggacaca      1500
     tagcagcaaa ttgcccaacg acagcattct tctgcaatga caaagaagga caagaggaca      1560
     acgaccacac aaaggttcag tcagaagaag atgcagatca tttaaacaag gatgggagac      1620
     actagcctct acaccagcct gtgctctccg taccagcaac gacggtgtcc ccagcatttc      1680
     gcttttctca gaaggttcca gtataccatc gtacatcgat aacggtacag aacattgttt      1740
     gattcgtaaa tctttagcac ttaagttagt taagacattc aaagcagtta gagaaatagg      1800
     tatggtgtgc atgaatggtc agaaaattag tcctattggt tctgtaaatt tgaatattca      1860
     cattggtcat aagaagatta accataattt ctttgttttt gagaagctac cttatccact      1920
     ttttattggt agagatttta taagaaaaag cgatatgatt attcatgaga atgcaaatca      1980
     tttttggttc aatgacaagt cagaggaaaa gtacacactt agaaatataa aaggaagatc      2040
     ttgttatatg ctgcatcctt ctaatataca tacactcaca gattcagttc acaatagagt      2100
     tcaagaattt cttaaaaagt atccaagtgt tgctcgtaaa gatggttctt taggcagaac      2160
     aaatgttgta aagcacaaga ttgaaattac tagtgagaag tcaataaatg ttactccaat      2220
     tttctaccca ccaaaatatt caaaagagat tgcaactcag attgaggatt tgttgaaaaa      2280
     aggtcttatt aaagaagttg aaaagtcaaa ttacaacgcg aacattgtac ttgctccaaa      2340
     accaaataac aaagttagaa tgacagtagg atacaaaaag ctcaattcaa tcacaaaaga      2400
     caatttttat ccaatgcata aagcttcata cattttaaag aggttaccga acggaggtta      2460
     ttattcaaag attgactgca attctggatt ttggcagatt gcaatggatg aagagagcgt      2520
     acaatacaca acattcaatt ttgaaggtcg tttattccaa tttttagtaa tgccattcgg      2580
     tttgaagaat agtggagctt catttgttta tttgatgaat actgtgttgc aagggttaat      2640
     aggaaagtcg tgctttgtat atgtcgatga cataattgtg ttttcgaaaa atattgatga      2700
     tcattttatt catttgaatg aagtttttaa gcggctagaa gaagcaggtc tttccattag      2760
     cttagaaaag agtcaatttt gtctcaggga agtaactttc cttggtcatt tagtcacaca      2820
     gaacggtata aaaatgcaac cagagaaagt cagagcaatt gttgatttac ctgttcctac      2880
     caaaaaagat gatcttcaca catttttagg catgtgcgct tggtatcaga gttatatacc      2940
     aaagttttct acaatagcag aacctctgta tcgtattttg tcaaaacgtg caagttggcg      3000
     ttggggtaat gagcaacaag aagcatttga gaaattgaaa ttagagttaa ttagcgatag      3060
     aattctgtgt agtataaatt atgatcaccc aattgtcata aagacagatg ctagcaacgt      3120
     aggtctcgga ggaatattag ttcagtatat taatggtaaa gaaaaagtta ttcattacgc      3180
     gtcaaaaatg ttaaataagt cagagcggct gttgcacgct tgtgaaaaag aattacttgg      3240
     tgtattatgg gctgtaaaaa agtttaagga atatgtacat ggtgaagatt tttacattgt      3300
     aaccgataat caagctctta agtatctaca gaagtttaag gatgaaaata cgaaactcgg      3360
     aagatgggct ttgcaacttg cggagtattc agataaaatc agacatgtca gtgggaagga      3420
     caataccgtg gcggacgcgc tcagtagaaa tcccatccca tcaaatgcag aggaagatga      3480
     cgctttgggt gacgatccag acgttatgtt cacgcctgtg tttgcagtct ttgaaagcgg      3540
     tccaaatctt caagagcttc gtgaggagca agaaaaggat cccgaggtca agaggatcaa      3600
     gcaggagata tcttcctgtc agttgtctgc agcatctgac ggtggatacg tcgtcaagga      3660
     tgacattctc ttcaaaaagg tacagaaaag tttggatatt cgtagaagaa agaagaagtc      3720
     cagaagtacg ttgagcaacg gtacggagac ggccactcca caacccgaaa ctcggcagaa      3780
     tgcagctggt agcaaaggaa ctacaatgag cagcactgga caacaaattg gtagtattga      3840
     tattattgag gttcccgtga ttcctgtaag tcttagaagt aaaattttaa atatgattca      3900
     tgattgtcct gaagctggtc actttggggt gaaaaagacc cgtttacgtg ccacttcacg      3960
     tgtgttttgg aaaggtatgt gtaaagatat aaaagaatat gttcgttcgt gtgatatttg      4020
     tcaaagggtt aaatatagta atcagaagcc tgcaggttta atgggcaatg cacagctagc      4080
     acataagatc tttgagaaaa tatatgtcga ctttttaggt ccatttcctg tcagtgcaaa      4140
     gagaaatcag tttttgttgg ttatgcaaga tgaagttagt aagtgggttg aacttttccc      4200
     catgagagta gcgaaagcag agaaagttat tgaagttttt aaagatgtat tttaccgttt      4260
     tgggtttcca aaaatgattg ttagtgataa cggaagccaa ttcacttcca aagtaatgaa      4320
     aagattttgt acagaaaaag gcattgatca tagatttttg agtacttatc atcctcagca      4380
     aaaccaatca gaaagagtaa atagaacgtt agtgccaatg ttaagcgctt ttgcaaatga      4440
     taaacagtca cattgggata agtacatacc tgaatttggt ttagctctta gaacagcaat      4500
     tcatgatgtt actggagtta gtcctgcaat gttaaatttg ggaagagaga taatgatgcc      4560
     atttgatcgt gcttttcaaa ataatgtaga tgattttgat gttaatatgt tcagaaagct      4620
     tccagaaatg atgaagaatg taattcacac agttcgtgaa aatatgattt caagtaggca      4680
     agaaaataaa aaatattatg acgagaaaca taggtttgta aagtatgacg ttggacagag      4740
     aattctggtc agatctcata ttttatcgtg taaagacaag ggcatttcca aaaaactttg      4800
     tttaaattgg gtaggtcctt ttaaaattgc caagcaaatt aatgatgttg tatatttaat      4860
     ttccgacgag caaggcaaaa tcttaggtaa gaaacacgtt tcgcacttaa aagcgtacgt      4920
     ggaaagatct tcgtatataa atcatttcat tcggcaacat tctagaatga aaacaattct      4980
     gatgatattt caaatattcc aagaaggtca ggtagaacaa gccatcaacc tggtcaatac      5040
     agacaaatgt taaggtaata aagcgtaaaa aactaatata tgtatatttt attatgttca      5100
     gtttacagac tgacggttga gaaaactgac cgaccgtcgt gacaagtaaa gttccaagtt      5160
     tgggaggcac agaagaaact tccaaaggca aaatgagacc gcaaagtgaa attcccagag      5220
     ttcagagatc aacagcagct acttaacaag tgacaacatt cccgaatcaa cccgtgcaga      5280
     aagaaagcag aaagcgtcag agaactggat attgtctttt cgctcagctc catacctaga      5340
     tggatacgag acgtgaaaga tgatctcatt caacaccaag aaaacgacga cgccacctcc      5400
     aacaccaccc attccaagat gtacggcaga acttgttaag ctaccacctc agctgaaaac      5460
     gtggaaatca aatccacctc acggtcctag aagacatcaa tggtcccttg aagttggcaa      5520
     atcctaaccg tccccgcaga ccactcaaca agtcaagaaa acgaagcagc ttatcaccag      5580
     cctccagaga gtatcaaaat cgccggaagt caacctggca gcgtttttgt tctcccccag      5640
     gagaactgca gcgggaggag ta                                               5662
//
ID   Gypsy-22_SiCu-LTR repbase;    DNA;    INV; 622 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-622
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5099-5099 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 622 BP; 221 A; 123 C; 105 G; 173 T; 0 other;
     tgcagcgtac tgcgttccaa caaagcatgt tgtgtaggcc atctatggtg tacccaagca        60
     ccttaaccac acctttcaat aaggctccta gattcaaacg gcctgcattc acaagcaagc       120
     tcaacaacat caaatgaagc caacgagcag agcagcagca gagattccat cgcgtccaac       180
     atcagtcttc atcttcgtgc cggtcaagtc agtcgagtaa aacgagacag cagcggttta       240
     gccagtatag ctaacccatg gctaacccat atatacattt tacattgctt taatatttcc       300
     tttagtcatt cagaaatatt cagaataaaa tattaacgac tgttgtaatt actaaattaa       360
     tattgaagag agtttgaaag tatttcattt attttgaaag ttgcagtatt gaacccggca       420
     tcagaattaa ttatcttaaa gtcataattt atttgatcag ttattattga agcacaatta       480
     gtgacgagaa gtaacggagt ttcatattta aagttatcct acctcagagc atcaattaag       540
     taaagcatcc agataaatag caaagttaag agaaataaag aagcatcata aaaattgaaa       600
     tcgtgaaacc caatccgtta ca                                                622
//
ID   Gypsy-22_SiOr-I repbase;    DNA;    INV; 4134 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4134
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 358-358 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..848
FT                 /product="Gypsy-22_SiOr-I_1p"
FT                 /translation="MNDMNEANPTNTPAERAQHVDRVAIKPPPFWKADPKL
FT                 WFVQLEAQFALSSITADLTKYNHVLSVVDTSILSQISELLLNPPADNKYNA
FT                 IKDRLISIYSDSQEKKLKTLLSDMNLGDKKPSQLLNEMTRLGGSSVSCELL
FT                 KTLWMQHLPAQMQSVLATSNDNLDNLAKMADKIAEIEQPRNFAVHNNDPSL
FT                 TDTIQKLYKEVQELKLQHPRREQSPHRKRSKTPLRQPQEEDGEVCWYHLHF
FT                 KDRARSCRAPCKKGPIQENETSRR"
FT   CDS           752..3964
FT                 /product="Gypsy-22_SiOr-I_2p"
FT                 /translation="SLLVPSSFQGPCKIMQSALQEGPHPGKRDFTTLRATN
FT                 AVNPTSRLTNPPATVNSTFSNNHRLVIKDPKTGISFLIDSGSDVSILPKMT
FT                 RNYDQHNKTCLYAANNTLIPTFGTKSVTVSLGLKRNFTWHFVIAQTDTAIL
FT                 GADFLHHFRLLIDLHGKKIIDTSTNLSYPGKLKLSSSDSVSTIDKNCKYFK
FT                 LLEEYSAITKLSKTDSYIPHQTTHIIPTDGPPVVSKARRLPADKLTIAKQE
FT                 FQTLLDQGICRPSNSSWASPLHLVKKKSGSWRPVGDYRRLNAITRPDNYPV
FT                 PNLQDFNHILHGKTIFSTLDLVRAYHQIPVDPESIPKTAIITPFGLFEFTR
FT                 MQFGLRNAAQSFQRFIHEVLRNLDFCFSYIDDILIASSSPEQHEVHLRQIF
FT                 QRLQQYGLTINLEKCVFGESCIKFLGYEISSNGTRPLPDRVTTILDYPLPK
FT                 FACDLRRYLGMLNFYRRFTPHAADHQTILHQMHKNCKKSDKTPLSWTSEAL
FT                 SAFEKSKNDLANAALLVHPHSSFPLSLTVDASNSALGAVVEQYENGIWKPL
FT                 SFFSRKFTPSETKYSTYDRELLGIYSAVKYFKYLLEGRNFQIFTDHKPLTY
FT                 AFRQKSDKASPRQTRHLDYISQFSTDIIHISGKNNIVADALSRINSINSPD
FT                 VIDYDEFQRHQKDDPELQQILQNPNSTSLSLKECTFADTSTMLFCDCSQSH
FT                 IRPFVPLSFRQLIFKKFHNLSHPGIRATNKLISSRFVWPSMNKDIKVWTRA
FT                 CITCQQSKIHRHTLTPYQQFQIPEERFQIVNIDIIGPLPSSNGYSYCLTCI
FT                 DRFSCWTEAIPLSNITAETIASAFYSGWICRFGTPLQIVTDQGRQFESSLF
FT                 QSLSILMGCKRVRSSPYNPKCNGKIERWHRTLKAAIMAHSSPQWTEVLPTV
FT                 LLGLRATLRSDVEVSPAELVYGSSIRLPGEFFQTSNTHTDPSTFLTLLKNK
FT                 MEMLRPVPDSNHSSSKPFISPELEKCTHVFLRRDSVRKPLQPPYDGPYRVI
FT                 SRHEKYFNIAINGKNVNISKDRLKPAYLLAPDNISHDHSYCKELSSVTETS
FT                 KCITFEKKQVRFYL"
XX
SQ   Sequence 4134 BP; 1306 A; 961 C; 650 G; 1217 T; 0 other;
     attggtgacc ccggaattac ctcgaacacg caacaatcga tcaatttctc gtcatgaacg        60
     acatgaacga agcgaaccca acaaatacac ccgcagagcg agctcaacac gtggatcgag       120
     tggctatcaa accaccaccg ttctggaagg ccgatccgaa actgtggttt gttcaactgg       180
     aagcacaatt tgctctatca agtattacag cagacctaac aaaatacaac catgtgctta       240
     gtgttgtgga cacgagtatt ttaagtcaaa tatcagaact actcctaaac ccacctgcgg       300
     acaataagta caacgctatc aaagacagat taatctcaat atattcagat tctcaggaga       360
     agaaattaaa aactctcttg tcagacatga atctcggcga caaaaaacct tcgcagctat       420
     taaatgagat gacacgttta ggaggttcat cagtttcatg tgaattactg aaaaccctgt       480
     ggatgcaaca tttacctgca cagatgcaat cagtattagc caccagtaat gacaatctag       540
     acaatttggc gaaaatggca gacaaaatcg cagagattga acaaccccgc aacttcgcag       600
     tgcacaacaa cgatccttca cttactgata ccatccaaaa gctctacaaa gaagttcaag       660
     agttgaaact acagcatcct cgtcgtgagc aatctccaca tcggaaaagg tcgaaaacac       720
     ctcttcgtca gccccaggag gaggatggtg aagtctgttg gtaccatctt catttcaagg       780
     accgtgcaag atcatgcaga gcgccttgca agaagggccc catccaggaa aacgagactt       840
     cacgacgtta agggcgacga acgccgtgaa ccctaccagt cgccttacca accctcctgc       900
     tacagtcaac tctaccttct ctaacaacca tcggttagtt attaaggacc ctaaaacagg       960
     tatatcattt ttaatagatt caggttctga tgtttccatt ttacctaaaa tgacacgtaa      1020
     ttatgatcaa cataataaaa cttgtttata tgccgctaat aacaccctga ttcccacgtt      1080
     tggtacaaag agtgttactg tcagcttggg tttaaaacgg aacttcacct ggcatttcgt      1140
     aatagctcaa actgatactg ccattttagg agcagatttt ctacatcatt ttcgactatt      1200
     aatagacctt catgggaaga aaattattga tactagcact aacttatctt atcctggtaa      1260
     acttaaactt tcctcatctg actctgtatc aacaattgac aaaaattgta aatattttaa      1320
     gctactcgaa gaatattccg ccattacaaa actttcgaaa acagactctt atattcctca      1380
     ccaaactaca cacatcatcc ctacagatgg tccaccagta gtgtccaaag ctcgtcgtct      1440
     ccctgctgat aagcttacca ttgccaaaca agaattccaa actctcttag accagggaat      1500
     ttgccgtcct tcaaacagta gctgggcaag tccactgcat cttgttaaga aaaaatcagg      1560
     ttcctggcga cctgttggcg attaccgtcg cttaaatgcc attacacgac ctgataatta      1620
     ccctgtgcct aacctacaag atttcaatca cattttacat ggtaaaacaa tttttagcac      1680
     cctagacctt gttagagcat atcatcaaat acctgtcgat cccgaatcta ttccgaaaac      1740
     agccataatc acaccctttg gtttgttcga atttactcgt atgcaatttg gtctacgcaa      1800
     cgcagctcaa tcctttcaac gtttcattca cgaagtctta cgcaatctag acttctgttt      1860
     ttcctatatt gacgacatcc ttatagcatc ctctagtcca gagcagcatg aagttcatct      1920
     tcgacaaatt tttcaacgcc tacaacaata tggtctcacg atcaatctcg aaaaatgtgt      1980
     ctttggcgag agttgcataa aatttttagg ttacgaaata tcttcgaatg gtactagacc      2040
     acttccagat cgagtaacaa ccattttaga ctaccctcta cctaaattcg cttgtgattt      2100
     gagacgatat cttggaatgt tgaacttcta ccgccgtttt acccctcatg cagctgatca      2160
     tcaaactatc cttcaccaga tgcacaagaa ttgcaaaaag tctgataaaa cgccattatc      2220
     atggacttct gaagctttat ctgcattcga aaaatctaaa aatgatttag ccaatgcagc      2280
     cttgcttgtt catcctcatt cttctttccc actctctctt acagtggacg catctaacag      2340
     cgctctagga gctgttgttg aacaatacga aaacggaatt tggaaacccc ttagtttttt      2400
     ttcacgtaaa ttcaccccta gcgaaacgaa atacagcaca tacgaccgtg aacttcttgg      2460
     aatttattcg gctgtaaaat atttcaaata tttgttagaa ggccgtaatt tccaaatatt      2520
     caccgaccac aaaccactca catacgcttt tcgacaaaaa tccgacaaag cttcaccacg      2580
     ccaaacacgt catcttgatt atatttcaca gttttccact gatataatcc acatcagtgg      2640
     taaaaataat attgtcgcag atgctctttc acggattaat tctattaatt ctccagatgt      2700
     aatcgattac gatgaatttc agagacatca aaaagatgat cctgaacttc aacaaattct      2760
     tcaaaacccc aactcaactt ccctatcgct taaagagtgt acctttgcag acacttctac      2820
     aatgctcttt tgtgattgta gtcaatcaca cattaggcca tttgtacctt taagcttcag      2880
     acagcttatt ttcaaaaaat tccataacct ttctcatcca ggcatacgag ctactaataa      2940
     attgatatct tcacgcttcg tttggccttc gatgaataaa gacatcaaag tatggacacg      3000
     agcgtgtata acatgccaac agtccaaaat acatagacat acccttacac catatcaaca      3060
     atttcaaata cccgaagaac gatttcagat tgtaaatatc gacattattg gtcccttacc      3120
     ctcttctaat ggttattctt attgccttac ttgtattgac cgattttctt gttggaccga      3180
     agcaatccct ttgagcaata taactgctga aactatcgca tccgcctttt attctggttg      3240
     gatatgccgt tttggaactc cactacaaat tgttactgac caaggtcgtc aattcgaaag      3300
     ttctctattt caaagtctca gcatattaat gggatgtaag cgagttcgat cttcaccata      3360
     caatcccaaa tgtaatggaa agattgaacg atggcatcga actttaaaag ccgctataat      3420
     ggcgcattct tctccacaat ggacagaagt tttacctacg gtactgttag gattacgtgc      3480
     tactcttcgc tcagacgtgg aagtttcccc tgctgaacta gtttacggtt cttccatacg      3540
     tttaccaggc gaattttttc aaacttctaa cactcatacc gatccttcga cattccttac      3600
     gctattaaaa aacaaaatgg aaatgttaag acctgtacct gatagtaacc actctagttc      3660
     aaaacctttt atatcacccg aattggagaa atgtactcat gtatttttac gaagagattc      3720
     tgtgagaaaa cctctacaac ctccttatga tggaccttat cgtgtaatat ctcgacatga      3780
     gaaatatttc aacattgcaa tcaatggtaa aaacgttaac atttctaaag atagactcaa      3840
     acctgcatat ttacttgcac ctgacaatat ttctcatgat cactcttact gtaaagaact      3900
     gtcttcggtt acagaaacta gcaaatgtat aacattcgaa aaaaaacaag ttcgttttta      3960
     tttatagaat aatctttgta ttagtattac actagtttaa gttaaataca tacatttaca      4020
     tttacataca aatgtttagt cataatgaat acccttttat tgtattaatg tattattatg      4080
     ttttgtaata tcctatacta ttttctacca actccgtttt ttagggggga gtat            4134
//
ID   Gypsy-22_SiOr-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-266
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 391-391 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 266 BP; 93 A; 59 C; 37 G; 77 T; 0 other;
     tgtggtgaca atgttgaaag cgacattcct actctatcct tggtgatact cgaatatcga        60
     gacacgtcca tagagtaata acaaaaacac gtctgtcaac ggtcaacgat gtcacacaca       120
     cactctcaca acacactctc aacaactact acgaataagt ttactcagcc ttctttaaac       180
     tgtgtatttg attaaagtat tttaataaag tgtgtactaa taagtttaca tcatattaat       240
     tgataaccca aaccgttagt accaca                                            266
//
ID   Gypsy-22_SpEx-I repbase;    DNA;    INV; 4359 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4359
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4091-4091 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..4057
FT                 /product="Gypsy-22_SpEx-I_1p"
FT                 /translation="MPIGKIEPFNIEDQNWDSYIRRVKQFILLNSIGDNLK
FT                 VATLLTLVGPECYNLICDLCSPTEPETKQFDELVVLVKNHLEPERSEIAER
FT                 HIFRQRTQQQGESIRVYLHGLKHLAKTCNFGSSLEENLRDQFVSGLFSEEM
FT                 RSRLFAEKNINYKRAVELATALEAAERHASTACASGGASAGGAGGTAAAAA
FT                 GELGLHRFGGGGARARPGAAPVPASSVHRRMCARCGKTGHAAGKCRFKNYS
FT                 CDSCGQKGHLKIMCQGKSESKSAKESKGQYFLNDSDSDDDCNFFKLVTSND
FT                 GDGPYYANLIVEKVLCKFEIDTGSKISAISKHFYDNHFKHVPIQTKLLCLR
FT                 SYTGDVIETLGYIVVHVVCGSKTAMLKLFIIENGGPPLMGRTWIKHLKLGI
FT                 FECHNIIDSDSVAKALREEFPDVFAEGLGTFRSPVSLHLKDETPVFVKARP
FT                 LPLALRPRVESELKRLEKEGVIYKVERSEYGTPIVPVIKSNGAIRICGDYK
FT                 ITINPILKDFHYPLPRIEELFATLGGGEQYTKLDLSNAFQQCLLDKKSQPL
FT                 TAITTHVGTFIYKRVPFGIKCIPENFQKIMEETLSGLPSTAVFADDICVTG
FT                 KDRVTHLANLRAVLERLKQNGLRINFKKCQFFKDCVTYLGYKIDKHGLHTD
FT                 SNKIEAIKAAPSPVNVTQLKSFMGLVNFYSKFCVNISDIMRPLYKLLQKNV
FT                 KWQWNDECEHAFCRIKNVLSSAPVLAHYDPTLPLVLSVDSSAYGLGAVLTQ
FT                 RYADGSERPVCCASRTLNAAEQNYSQLDKEALAIVFGVRKHHQYLYGRHFI
FT                 LRSDHRPLSYIFGPNKGIPVTAASRLQRYAVHLSAYNFKIEFIKSTQNCHA
FT                 DALSRLPLNSIKTRIKCEDSDSYLNFVQDTFPLSFKNIKTETAKDSLLSKI
FT                 YGYVMFGWPKTCNIETEKAYFNRKESICVDQGCLIWGYRIIIPKSLQISIL
FT                 KEIHDGHPGIVKMKQIARNYVWWETLDADIERTVQECVACRSQRSAPAPAP
FT                 LHSWPWPEEPWSRLNLDFLGPFNNKYYLVIIDAHTKWIEVENVAGTSAAVV
FT                 IDCLRKLFARFGLPKRIVSDNGPPFASAEFKKYLDFNGIRHTLVAPYHPSS
FT                 NGAAENAVKLIKRTLKKAQVQNENLNTALHKFLFSYRNTEHSTTGREPAML
FT                 MFGRRLRGRLDLLRPDTRDLVRQRQEASERRRDTTLRVAEPQETVLLRDYS
FT                 KNGQKWTEGTVVRRESPVSYTVKSQDGRVHKRHIDQILTNKHPKSRFSLSK
FT                 VQEEACNQPVAEPILAPDTDQDDQGVEEWQLAEESPTSRTLSDRCDEAPST
FT                 PTNRAYRRAALRCMEKLRQM"
XX
SQ   Sequence 4359 BP; 1326 A; 822 C; 1022 G; 1189 T; 0 other;
     ttggcgcagt cggtctagaa agttcggttc ggtattgcag ttaatagact aattaatcat        60
     aatgccaatc ggaaaaatag aaccttttaa tattgaagat caaaactggg acagttatat       120
     tcgtcgtgta aaacaattta tattgttaaa tagtatcggt gacaatttaa aagtagccac       180
     gctgttgaca ttagttggtc ccgaatgcta taaccttatt tgtgatttgt gctcacccac       240
     ggagccggag acaaagcagt tcgatgaatt agttgtactc gtcaaaaatc atttggaacc       300
     ggagagatct gaaattgcgg agcgacatat ttttcggcag cgaacgcagc agcagggaga       360
     aagtattcgt gtttacctac atgggctaaa acatttggct aaaacctgca acttcggtag       420
     ttctttggaa gaaaacctac gcgaccagtt cgtgtccggt ttattcagtg aagaaatgcg       480
     atcaagatta tttgccgaaa agaatataaa ctacaaaagg gcggtggagt tggccacggc       540
     gctcgaggca gctgagcggc atgcgagcac ggcatgcgca tcgggaggcg cgagcgctgg       600
     cggcgccggc ggcacagcgg cggcagcggc cggtgagctc ggcctgcacc ggttcggcgg       660
     cggcggagcg cgcgcgcggc ctggcgcggc tcccgtcccg gcgtcgtcgg tacaccgtcg       720
     tatgtgtgcg cgttgtggta agaccggcca cgcggccggc aagtgtcgtt ttaaaaatta       780
     ttcgtgtgat tcgtgcggcc agaagggcca tttaaaaata atgtgtcaag gtaaaagtga       840
     atccaagagt gcaaaggagt ccaaaggtca gtacttttta aatgattcag actcagatga       900
     tgactgtaat ttttttaaac tggttacaag taatgacggt gacggaccgt actatgcaaa       960
     tttaatagta gaaaaggtgt tgtgtaaatt tgaaattgat acgggcagta aaatatcagc      1020
     aatttcgaag catttttatg ataatcattt taaacatgta cctattcaaa caaaattgtt      1080
     atgtctgaga tcttatacgg gggacgttat cgaaaccctt gggtatattg tggtgcatgt      1140
     tgtttgtggt tccaagactg cgatgcttaa gttatttatt attgaaaacg gcggcccacc      1200
     attaatgggt cgtacgtgga ttaagcactt aaaattagga atttttgagt gtcacaatat      1260
     tattgactcg gactcggtag caaaagcttt gagagaagag ttccctgatg tgtttgcaga      1320
     agggctaggt acattcagat cgcctgtatc actgcatctc aaggacgaaa ccccagtatt      1380
     tgtgaaagcg cggccgctgc cgttagcact gcgcccgcga gtcgaaagtg aactaaagcg      1440
     gttagaaaaa gaaggcgtta tttacaaagt cgaaagatct gagtatggca cgcctattgt      1500
     tccggtcatt aaatcgaatg gcgcgataag aatatgtgga gattataaaa taacaattaa      1560
     tccgatttta aaagatttcc attatccttt accgcgaatt gaagaacttt ttgcgacctt      1620
     gggaggcggt gagcagtaca caaaacttga tttatcaaat gcattccaac aatgtttatt      1680
     agataaaaag tcacagccgc tgacggcaat taccactcat gtcggaacat tcatttacaa      1740
     gagagtacct tttggaataa aatgcattcc tgaaaatttt caaaagataa tggaagaaac      1800
     attgagtggc ttgccttcaa ctgctgtatt tgccgatgac atatgtgtta ctggaaagga      1860
     tagggttacc catttagcaa acttgagagc tgtgttggaa agattaaaac aaaatggatt      1920
     aagaatcaat ttcaaaaaat gtcaattttt caaagattgt gtaacgtact taggatataa      1980
     aattgataaa cacggcttgc acacagattc taacaaaatt gaagccatta aggcagcgcc      2040
     gtcgccagtt aatgtaactc aactgaaaag ttttatgggc cttgttaatt tttactctaa      2100
     attttgtgta aatataagtg acataatgag accgttgtat aaattattgc aaaaaaatgt      2160
     taaatggcaa tggaatgatg agtgtgagca tgctttttgt cgcatcaaaa acgtattgag      2220
     cagcgcaccc gtgttggcac actatgatcc tacattgccg ttagtgttgt cagtggacag      2280
     cagtgcttac ggactgggcg ccgtgctcac gcagcggtac gcggacggca gtgagcggcc      2340
     cgtgtgctgt gcttcgcgga cacttaacgc cgccgagcag aattactcgc aattggacaa      2400
     ggaagcactt gcaattgtgt tcggtgtgcg taagcatcac caatacttat acgggcgaca      2460
     ttttatttta cgtagtgatc atcgtccgtt gagctatatc tttgggccga ataaaggaat      2520
     acccgtaaca gccgcaagta gattacagcg ttatgctgtc cacctgtctg cgtataattt      2580
     taaaattgaa tttattaaat caacacaaaa ttgtcatgct gatgcgctgt ctcgtcttcc      2640
     tttgaattct attaaaacca gaatcaaatg tgaggacagc gacagctatc tcaattttgt      2700
     gcaggatact tttccactca gttttaaaaa tattaaaact gagacggcaa aggattcttt      2760
     attgagtaaa atatacggtt acgtgatgtt tgggtggcca aaaacatgta atattgaaac      2820
     tgaaaaagca tattttaacc gcaaggaaag tatttgtgta gatcaaggtt gcctgatttg      2880
     gggctaccgt ataataattc caaaatcatt acaaatttcc atattaaaag aaattcacga      2940
     tggccatcca ggaatcgtga agatgaagca aatagcgagg aattatgtct ggtgggaaac      3000
     attggatgct gatatcgagc gaacagtaca ggaatgcgtc gcatgccgtt cgcagcgctc      3060
     agcacccgcc ccagctcccc tacattcctg gccatggccg gaagaaccat ggtctaggct      3120
     gaatttagat tttttagggc cattcaataa taagtattat ttagttatta ttgatgccca      3180
     tacaaaatgg atcgaggttg aaaatgtagc gggaacgtcc gctgcagtgg taattgattg      3240
     tttacgtaag ctttttgcgc gtttcggctt acctaaaaga attgttagcg acaatgggcc      3300
     gccatttgct tctgcagaat ttaaaaaata tttagatttt aacggtattc gccacacatt      3360
     agttgcacca taccaccctt caagcaatgg ggcagctgaa aatgccgtaa aattaataaa      3420
     gaggacatta aagaaagccc aggttcaaaa cgaaaatttg aacacagcac tccataaatt      3480
     tcttttctcg tataggaata ctgaacatag taccactggt cgcgagcccg caatgcttat      3540
     gtttgggcga cggttgcgag gtcgactcga tctgctgcga cccgacacgc gtgacttggt      3600
     gcgtcagcga caggaggcta gtgagcggcg acgggacacc actctacgag tggccgagcc      3660
     ccaagagacc gtgctactac gcgattattc taagaatggg caaaagtgga cggaagggac      3720
     ggtggtacgc cgagaaagtc cagtttctta tacggtgaaa tctcaagatg gtcgtgtaca      3780
     caagagacat attgatcaaa tattaacaaa caaacatcca aagtctagat tttcattgtc      3840
     taaagtacaa gaggaagcgt gtaaccaacc agtagcagag cccatattgg cgccagacac      3900
     ggatcaagac gaccaaggcg tagaggaatg gcaactggct gaggagtcgc ctacctccag      3960
     aactttgtct gatagatgtg atgaagcacc gtcaacaccg acaaaccgag cctatagacg      4020
     ggctgcttta cgctgcatgg aaaaattaag acagatgtaa tatttacgta attgtttatt      4080
     tgtttacgtt tccagacatc acactcatca ttgcatagtt aatttaggat taacacaggt      4140
     tgctaggttg aagatttata gatgtataaa tatgtaggtt tatctgcatt aagtattatg      4200
     taggtaagta ggcataatga tgtactacaa aaccgtaaga acgtccatat gtaattgtat      4260
     tgtctcgaat aagtttcact ttgtttttta agatatacat actaaatatt tatatatatt      4320
     gttaagttta gactaccaat ttaaaatata ggaaggaag                             4359
//
ID   Gypsy-22_SpEx-LTR repbase;    DNA;    INV; 105 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-105
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4151-4151 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 105 BP; 27 A; 17 C; 23 G; 38 T; 0 other;
     tgttatgtcg gtgcatgaat atcaattgta tgggggtaga cacgttttta tttataataa        60
     acagtcgtta cccgatctcg gccttttatt gacgtgtacg taaca                       105
//
ID   Gypsy-22_SpFr-I repbase;    DNA;    INV; 4774 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4774
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1883-1883 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. The consensus is ~92% identical to
CC   that of Gypsy-51_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..4262
FT                 /product="Gypsy-22_SpFr-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MIDFRSFKMNVDESAMADAELPHGVSNATPPPPVFQR
FT                 RTTSGCSSPILGQEVPHNSTGHRNASQVNGGTVPGGSTDGRDTRTVEFVPI
FT                 NYMQNMMQEMMTQLIRTTAQAFNPPNVRPTPRMRSLEHIYVPAFDPDDRTD
FT                 TVQVWCRNIEELKTEYELTDREILNLTRKNLRGRAAEWARRNYSSLTSWTE
FT                 LKIGLIETFADEARYYDDLTQFMEYTSEQASSLAEYATRKWELAKKAIGVE
FT                 MTEQRLVEAVISGMSDFRIRSDLLRLTPKSLPQLIQSLNSYKRKRPGKESD
FT                 HTIPSKRFKNVPSSDIASRRCHKCHKLGHLQKDCRSGSTNRGPQKNSASTS
FT                 DSSKPAESKPLKNNTCTFCNRRGHTFENCFQRLNKNAKDEKLSHVNSLVLS
FT                 NKNLHSIKIENRDYSCLIDSGAECSLMRESIGDSIKGRIIYKSLILRGVGD
FT                 NSFRSSRTKLCMVCIDGLNIELEFVLVPDRYIQYDVLLGQNLFDIRGIQVT
FT                 FSKDFVKVCRNSYNINCIQKEFDLDMVDVNPDISPEIKIQLHNLLQSYSEM
FT                 FTSGNAVSQVTTGELTIRLKNPEKIVQRRPYRLAPAERDHVKKLIKDLKDN
FT                 NIIRDSNSPFASPILLVRKKDGSDRMCVDYRELNSNTVRDHFPLPIIDDHI
FT                 SKLSGAKYFSVLDMAAGFHQIPIAKDSIEKTAFVTPDGQYEFLRMPFGLCN
FT                 APSVFQRAINTALKQFVDDFVLIYIDDVVIYSETVDQGIERLKVVLDALQK
FT                 TGFSLNVKKCKFLQNEIEYLGRIVSNGQVKPSPGKVHALLSAPIPTTVKHV
FT                 RQFCGLASYFRKFIPNFSLIMIPLYNLTRSSVKWNWTSEHEAARNKILEYL
FT                 ASEPVLTLFDPTKSVELHTDASSAGLGGILFQKHNDQMKVVEYFSMRTTDT
FT                 ESRYHSYELETLAVVRSIKHFRHYLLGRPFKVVTDCNSLKASRNKKELLPR
FT                 VHRWWAYLQSFDFTIEYRKGERIPHVDYLSRNPTTVNISNVQNYSEWLEVE
FT                 QNNDPETKTIIESIQQGSIDKNVASSYEIQGGLLYRVISIGNKIKKRLFVP
FT                 KSYRWHIIQIYHDSLKHFGWEKTLEKIREQFWFPNMSKCTRKYVDNCLTCK
FT                 INKSQSGSRQITLHPIDKPPTPFHTIHMDTTGKLSGNKPTKQYAVVFIDAF
FT                 TKFVFIKPVTNLTAAATVNCLKELIYTFGTPKRIVCDQAASYTGREFSSFC
FT                 EHWSIELHFIASGVSRANGQVERMMKVLTNCFTIVENTSKRSWKDAVGEVQ
FT                 LAINSTFSKSTGRTPFQLLMGCDQSPPAISALLNDVERLDLDACREESKLR
FT                 MDELAQTQKANYDKTKAKIVPFKVGDTVLIRQNPRAINKLDSKFRGPCVIT
FT                 EIHDNDRYTVRVHKTGNELYVSHDNMRIVSPDMGCELTDSLDTSD"
XX
SQ   Sequence 4774 BP; 1448 A; 935 C; 981 G; 1410 T; 0 other;
     tcagaagtgg gataggaaaa cataaactac gcctacgaat gattgatttc aggtctttca        60
     agatgaacgt tgatgaatct gcaatggccg acgctgagct gccccatggc gtgtcaaatg       120
     ctacgccacc accgccggtg tttcaaaggc ggactacctc cgggtgctca tcaccaattt       180
     tgggccaaga agtaccgcat aattcgactg gccacagaaa tgcgtctcaa gttaacggcg       240
     gtactgttcc tggcggatca acggatggtc gtgacacaag gacagtagaa tttgtaccta       300
     ttaattatat gcaaaatatg atgcaggaaa tgatgacgca attaatccgt accaccgcac       360
     aggccttcaa tccaccaaat gtgcggccta ccccgcggat gcgaagtctt gaacatattt       420
     atgtacctgc atttgatccc gatgatcgga ccgatactgt acaagtttgg tgccgaaaca       480
     ttgaagagct taaaaccgaa tatgagctta ctgaccgaga aatccttaat ctaactcgga       540
     aaaatttgcg cggacgagcc gctgagtggg cacgtcgcaa ttattcatct ttaactagct       600
     ggactgaact taaaataggt ttaattgaaa catttgcaga tgaagcccgt tactacgatg       660
     acctaacgca gttcatggaa tacaccagtg agcaagccag tagcctagct gagtacgcaa       720
     ctcgaaaatg ggagttggca aagaaggcga ttggcgtgga gatgactgag caacgcctcg       780
     tcgaagcagt tatttcgggt atgtctgact tccgtattcg ctctgatttg cttcgactta       840
     caccaaaaag tttgccacag ctaattcaaa gtcttaattc atataagcgt aaacggcctg       900
     ggaaagagtc tgatcacact attccatcta agcgttttaa aaacgttcct agttcagata       960
     tagcatctag gcgttgtcac aaatgtcaca aattaggtca cttacagaaa gattgccgct      1020
     caggctcaac taatcgcggt cctcaaaaga attcagcttc tacttctgac agttccaaac      1080
     ctgctgaatc aaagcccctt aaaaataaca cctgtacatt ttgtaataga agggggcata      1140
     cttttgaaaa ctgttttcaa cgcttgaata agaacgcgaa agatgaaaag ttgtctcacg      1200
     taaatagttt agttttgagt aataaaaact tgcactcaat caaaatcgaa aaccgcgatt      1260
     attcgtgcct gatagacagt ggtgcggaat gctctcttat gcgcgaaagt ataggcgatt      1320
     ctattaaggg taggatcata tataaaagtc ttattttgcg aggcgttgga gacaattctt      1380
     ttcgttcatc acgtacaaaa ttatgtatgg tgtgtattga tggcctcaat attgaattgg      1440
     aatttgttct agttcccgac agatacatac agtatgatgt tttacttggt caaaatcttt      1500
     ttgatatccg gggaattcag gtcacttttt caaaggattt cgttaaagtc tgtcgtaatt      1560
     cttacaatat taactgtatt caaaaggaat ttgatcttga catggttgat gttaaccctg      1620
     atataagtcc cgaaattaaa attcagttac ataatttatt acaatcttat tctgaaatgt      1680
     tcacgtctgg caatgcagtt tcgcaagtaa ctacaggcga actgactatt cgtttaaaga      1740
     acccagaaaa aatagttcag agaaggccct atagattggc tccagctgaa cgtgatcatg      1800
     tcaagaagtt gattaaagat ctaaaagata ataacatcat tcgagatagt aattcgccct      1860
     ttgcgagtcc catattacta gtgcgaaaaa aggatggtag cgacagaatg tgtgttgact      1920
     acagagaatt aaatagcaac accgtccgtg atcactttcc acttcccatt attgacgacc      1980
     atattagtaa attatcggga gctaaatact tttccgtact agatatggcg gcaggtttcc      2040
     accaaattcc aatagctaag gactcaattg aaaaaactgc cttcgtcact cctgacgggc      2100
     aatatgaatt tctacgcatg ccatttgggc tttgtaatgc accttccgtt ttccaaaggg      2160
     ccatcaatac agcacttaaa caatttgttg acgattttgt tttaatttat attgatgacg      2220
     tagttatcta ttcagaaaca gttgatcaag gtatcgagcg tttaaaggta gttctagatg      2280
     ctcttcaaaa aaccggtttt tcccttaatg ttaagaaatg caagtttctg caaaatgaga      2340
     ttgaatattt aggtagaatt gtctctaacg gtcaagttaa gccaagtccg ggtaaagttc      2400
     acgctcttct aagtgctccc atcccaacaa ctgtcaaaca cgttcggcag ttttgtggat      2460
     tagcgagtta tttccggaaa tttataccaa atttttcttt gataatgatt ccgctatata      2520
     acctgactcg tagtagtgtc aagtggaact ggacatctga gcatgaagct gctagaaata      2580
     aaattcttga gtacctagct tccgaacctg tgctgactct atttgatcct accaaatctg      2640
     tagaacttca cacagatgcc agttccgcgg ggctcggagg tatccttttt caaaaacata      2700
     atgatcagat gaaagtcgta gagtatttta gtatgcgcac cactgatact gaaagtcgtt      2760
     accactctta cgagttggaa acgctagctg tagttagatc cattaagcat ttccgtcatt      2820
     atttactcgg caggccattc aaggtcgtta cagattgtaa ctctctgaag gcctcacgta      2880
     acaagaaaga attattaccc cgtgtgcata gatggtgggc ataccttcaa tctttcgatt      2940
     ttacaataga atatcgtaag ggagaacgta ttccccacgt agattatttg agccgcaatc      3000
     cgacaactgt caatataagc aatgttcaaa attatagtga atggttagaa gtagaacaaa      3060
     ataatgaccc tgaaaccaaa actattatcg agtctatcca acaaggcagt attgataaaa      3120
     atgtagcatc cagttatgaa atacaaggtg gtctgctgta tcgtgtcatt tccatcggta      3180
     ataaaattaa aaaacgtcta tttgttccaa aaagctatcg atggcatata atacaaattt      3240
     atcatgattc tcttaagcac ttcggctggg aaaagaccct tgaaaaaatt agagagcagt      3300
     tttggtttcc caatatgtcc aaatgcactc gaaagtatgt tgacaattgt ctgacttgca      3360
     aaattaataa aagtcaatct ggttcccgac aaattactct acacccaata gataaacctc      3420
     cgacgccatt ccataccatt cacatggata cgactggcaa attgagtggt aataagccta      3480
     ccaaacaata cgctgttgtc tttatagacg catttacaaa gttcgttttt ataaaacctg      3540
     ttactaattt gactgcagca gcgaccgtta attgtttgaa agaattgatt tacacttttg      3600
     gtactcctaa acggattgtt tgtgatcagg ctgcttccta caccggaaga gaattttcaa      3660
     gtttctgtga acattggtct atagagttac atttcatagc tagtggtgta agccgcgcaa      3720
     acgggcaagt ggagcgaatg atgaaggttt tgacaaactg ctttacaatt gtagagaata      3780
     catccaagag aagttggaag gatgctgttg gcgaagtaca gttggcaatt aatagcacat      3840
     tcagtaaaag tacaggccgt actcctttcc aacttcttat gggctgtgat cagtctcctc      3900
     ccgctatatc agccttacta aatgatgtcg aacgtttgga cctcgatgca tgccgtgaag      3960
     aatcaaagct caggatggac gagcttgctc aaactcaaaa agctaattat gataaaacta      4020
     aggctaaaat tgttcccttt aaggtcggtg atactgtttt gattcgacaa aatccgcgag      4080
     caattaacaa acttgacagt aagtttcgag gtccatgcgt cattacagag atacatgata      4140
     acgatagata cacagtaaga gttcataaaa ctggtaatga gttgtatgtt tctcatgata      4200
     atatgcgaat tgtcagtccc gacatgggat gtgaattaac tgactcatta gatacctctg      4260
     attaaatttt gtatttacct aatagtttat ttaattatgt agctttacat tctgggaaaa      4320
     ttgttcggca taacagtgat cgtctggcca acgaccatgg ttgtgtctga caatcgtacc      4380
     agtgccatgt gatttggcgt tacggtcatg tgatttgacc agacttattg ccatgtgatt      4440
     tggccggcca tgtgatttgg cgttacggtc atgtgatttg accagactta ttgccatgtg      4500
     atttggccag ccatgtgatt tggcgttacg gtcatgtgat ttgaccagac ttattgccat      4560
     gtgatttggc cagccatgtg atttggcgta acagtcatgt gatttgacta gaactgattg      4620
     ccatgtgaat tggtactacg gtcctgtgat ttgaccataa aaagattttt gaatgtgttt      4680
     ttagtaagat ttctaacact gattgttaac gatcgttcct taaatattat aatggtctta      4740
     ttcgcgagcc ataggctgct cgtcagaatg gccg                                  4774
//
ID   Gypsy-22_SpFr-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-438
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1875-1875 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 438 BP; 118 A; 65 C; 76 G; 177 T; 2 other;
     tgtgagagtg aagacatttt taagatttta aattgtttaa tgtatttttt ttaatcaact        60
     tccgttttat gaaagtattg catttgactt cttgctaccc ccacttacta ccgaatcgta       120
     gtaggaaagt ggggcgcaca cttgtcgacg gatcagaagt tgttcgactg cggacacggc       180
     acaacggtgc tctgaactgt caggtaatac tgttcattta tattgtgaaa atgctgttac       240
     gttgcttatt tatctcgatg tgawgctata atcattttat gctttatgaa tatctgtctg       300
     tattactgta ttttagaata tctgtctaat tattcgtagt gattagtaaa tatgcttatt       360
     ttggtaaatt cacttaataa attgttatga atattkaaat tgtcttttta ctgttgttta       420
     ttactaattt ctcccaca                                                     438
//
ID   Gypsy-22_TrNi-I repbase;    DNA;    INV; 4377 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4377
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 225-225 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..4306
FT                 /product="Gypsy-22_TrNi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MAVGKIGPFDVSKDNWDTYVDRLDQYFIANNVKSELK
FT                 IATLITVVGNSAYELMVNLCTPVKPATKTYDELVAVMKGHLNPKPSMLAER
FT                 FKFRQRIQKPGENVATYFSELKRLSKDCSFTAESLKENMRDQFVCGLVNDD
FT                 IRQKLFTEEDGISIDKAYRLALAMEAAETNAALVEDGTRRGIGGSAAETAS
FT                 VTVHKVGQDGGNGKRGAFRGGGGGYRPAAGRNTRSAHNSRRSGSGGPTIAS
FT                 GADYNLPQAGTQKEACNVCGGKHDADTCKFKKYVCRVCMQEGHLRRMCPKL
FT                 GKNNFVYNWREGGVYKSSDSESDEVIVPIHRLSLQQCTPILMLLNVHGLKL
FT                 KMECDTGSAISCINYQLYKKHFSSLHIKPTNLVLRYYTGELVNPVGVIRPL
FT                 VEYNKIKKILDLYVIDKGNTVLLGRQWMAELNITVSALQYNTVNNNENLDQ
FT                 SFNFAEFSSRYCEVFADGLGRFTGGRVSIHVREGARPVFMRARPLAYALRE
FT                 PVERALEQLVRDDILTPVSHSDWAAPIVPVVKKDGTIRICADFKLSLNKVL
FT                 EVDRYPLPKVEDLLSRLHGGERFSKVDLSQAYAQFELDDTRKYAVINTHKG
FT                 LYMYKRLVYGLSSSPGVFQRRLEQLFADIPRVGVFLDDIIITGKDTRQHLD
FT                 NLHKVFERLKSSGLKVRKEKCSFFVESLEYLGYVISKEGVHTCKDKVEAIV
FT                 KTPIPRNVSELRAFIGMVMYYGKFIKNVSSILTPLYNLLRAGVKYEWSDGC
FT                 EEAFARVKRALSTSEVLVHYSLXLPLVLTADASATGIGAVISHITPEGERP
FT                 IAYASRTLNSAERSYAQIDREALAIIYGVRKFHQYLYGRKFTLRTDHKPLT
FT                 YIFGNKVGIPVMAASRLQRWAIILSGYSYNIEYVASAKNCADALSRLPTPS
FT                 SDKNKIGCEYTYLNFAGSFLPVTNDDVRXATARDRVLSRVMVSVQSGWPSH
FT                 CADEVIKPYFNRRHELYVERGCIMWGYRVVIPPTLRNTILKELHVSHMGIV
FT                 KTKSMARSFVWWPNIDTDIESTCRSCETCAMEATAPPQAAPRSWPYITQPW
FT                 SRLHIDFLGPYRGKTFFVIIDSSTKWIEVFEMNKTNAXAVVKVMRSLFARF
FT                 GLPLEIVSDQGPPFTSAELGEFLRLNGIKQSFSPVYHPASNGAAENAVKLC
FT                 KRTIKKAIRDSVDIDTALQTYLLAYRNSIQSTTGESPAMLLQRRPLRSRLD
FT                 LLRADRARQERVDRVQRQQMLSSGAEPTQQYAAGETIWARNYGSSDKWMKG
FT                 TLVNQQGSRRYVVKGDDGRLLTRHSDQIRLRTRRSSLVYPELISEERVGGG
FT                 VVEQQQQQLSPRISNAKVGEGAGSGEAGSEDLVVSDVPEETASKTSPGRDT
FT                 PPLATDSNVASSVSRPTRVRRKPIRYGFEFD"
XX
SQ   Sequence 4377 BP; 1242 A; 825 C; 1216 G; 1090 T; 4 other;
     gtggcgacga aaaaaaagcg acttcacgcg tatatatata ttttagtctt gaggggaatg        60
     ctacaaaagc gcagtggtca atttgaatct tgccgaactg gtctgtgtgt ggcgtccgtt       120
     ggaaatggcg gtcggtaaaa tcggcccatt tgatgtgtcg aaagacaatt gggacacgta       180
     cgtggatcgt ctggatcagt actttattgc caataatgtg aaaagtgagt taaaaattgc       240
     gacattaatt acggttgtcg gcaatagtgc atatgagtta atggtgaatt tatgcacacc       300
     agtgaaacca gccacaaaaa cctatgacga actggtagcg gtgatgaaag gacacttaaa       360
     tcctaagccg agcatgctcg ctgaaagatt caaatttcgt caacggattc agaaaccagg       420
     tgaaaatgta gcaacttact tctcggaact caagagatta agcaaagatt gttcttttac       480
     ggcggaaagt ttgaaggaaa atatgaggga ccagtttgtg tgtggattag taaacgacga       540
     catccggcaa aagttgttca ccgaagaaga tggcatcagt atcgacaaag cgtacaggtt       600
     ggccttagct atggaggcgg cggagacgaa cgcggcgtta gtggaagacg gtacgagaag       660
     agggatcggc ggcagtgcag cggagacggc atctgtaacc gtgcataaag tcgggcagga       720
     cggcggtaac ggaaagcgcg gagcgtttag aggtggcggt ggcggctatc ggccggccgc       780
     agggcggaac actcgctcgg cgcataactc tcggcgatca ggcagcggcg gtccaactat       840
     tgcaagcgga gctgattaca acttgcctca agcgggcact caaaaggagg catgcaatgt       900
     ttgcggaggc aagcacgacg cggacacatg taaattcaaa aaatatgtgt gtcgagtttg       960
     catgcaggag gggcatttaa ggaggatgtg cccaaagctg ggcaagaata atttcgtgta      1020
     caattggaga gagggcggtg tctacaagtc ttcggatagc gaaagtgacg aggtaatagt      1080
     acccatccat cgtttatcac ttcagcaatg tacacctata ttaatgttgt taaatgtaca      1140
     cggcttaaaa ttgaaaatgg agtgtgatac cggtagtgca atctcgtgca ttaattacca      1200
     actgtataaa aaacattttt ccagtttgca tattaaaccg acaaatttgg tcctaaggta      1260
     ttacacgggc gaactggtta acccagtggg tgttataaga ccattggtag agtataataa      1320
     gattaaaaaa atattggatc tgtatgttat tgacaaggga aatacagttt tgttaggtag      1380
     acagtggatg gcagagctca atataacagt gtcagctttg cagtataata ccgttaataa      1440
     taatgagaat ttagatcaga gttttaattt cgcggaattt agttccagat actgtgaggt      1500
     gtttgcagat ggtttgggac gattcacggg gggtcgagtc agcatccacg ttcgagaggg      1560
     ggcgcggccg gtgtttatgc gcgcacggcc gctggcgtac gcactacgcg agccggttga      1620
     gcgcgcgctg gagcagctgg tgcgcgacga catcctcact cccgtcagcc actcagactg      1680
     ggctgcacca atcgttccgg ttgtgaagaa agatgggacg attagaatct gtgctgattt      1740
     taaactaagc ttaaacaaag ttttggaggt cgaccgttat ccgttaccta aggtagaaga      1800
     tcttttgtct cggttgcacg gaggcgaaag gtttagtaaa gtcgatttgt cacaggcgta      1860
     cgcccaattt gagctggatg atacwaggaa atatgctgtt ataaacacac acaaagggct      1920
     ttacatgtac aaacggctag tgtatgggtt gtcgtcgagc ccaggagtat tccagaggcg      1980
     gttagagcaa ttgtttgctg atataccacg tgtgggagtg tttttagatg atattattat      2040
     aacaggaaaa gacacacggc aacacttaga taatctacat aaagtttttg aacgccttaa      2100
     gtccagtggc ttaaaagtaa gaaaagaaaa atgttcgttc tttgtggagt ctcttgaata      2160
     tttagggtat gttataagta aggaaggtgt tcacacatgc aaagataaag tagaagcaat      2220
     tgttaaaacg ccgataccaa ggaacgtatc tgagttgagg gctttcattg gaatggttat      2280
     gtattacggt aaatttataa aaaatgttag ttcgattctt acgccgttat ataatttgtt      2340
     gcgtgcgggg gtgaagtacg aatggagcga cgggtgcgag gaagcctttg cgcgggttaa      2400
     acgggcgctg agcacgagtg aagtgcttgt gcattactca ctggamctgc cgctggtgtt      2460
     gacggcagac gcgagtgcca caggaatcgg cgccgtcatc tcacacatca cgccggaagg      2520
     cgagcggccc atcgcgtacg cgtcacggac gcttaattcc gcggaaagat cgtatgcgca      2580
     aatagacagg gaggcgttag caattatata cggggttagg aaattccatc agtacttgta      2640
     cggtaggaag tttactttaa gaacagatca taaacccttg acgtacattt ttggtaataa      2700
     agtaggtatt ccggttatgg cagcgtccag attacaaagg tgggcaatta tattatcggg      2760
     ttattcgtat aatatagaat acgtggcgtc cgccaaaaac tgtgccgacg cattgtcgcg      2820
     tctaccgaca ccatcatcag ataagaataa aatcggttgt gaatatacct atttaaattt      2880
     tgcgggaagt tttttgccag tgacgaatga tgatgtgcga gkagcaacag cgcgggatcg      2940
     agtgcttagc agggtgatgg ttagtgtgca gtcggggtgg ccgtcgcatt gcgcggatga      3000
     agtgattaaa ccgtacttta ataggcgaca cgaattatat gttgaacgcg gttgtattat      3060
     gtggggttac agagtggtaa ttccgcccac tcttaggaac acaattctga aggagcttca      3120
     tgttagtcat atgggcatag ttaagaccaa gtcgatggct cgaagttttg tatggtggcc      3180
     caatatagac acagacatcg aatcaacgtg ccgctcatgc gaaacatgtg cgatggaagc      3240
     aactgcgccg ccgcaggctg ctccacgtag ttggccatat ataacccagc cgtggagtag      3300
     attacatata gatttcctag gaccatatcg gggaaaaaca tttttcgtaa tcatcgattc      3360
     cagcacaaag tggattgaag tttttgagat gaataaaaca aacgccamgg cggtcgttaa      3420
     ggttatgagg tcgttatttg ctcgattcgg tttgccgttg gaaatagttt cagaccaagg      3480
     gccgccattt actagtgcag agttagggga gttcttaaga ttgaacggca tcaagcagtc      3540
     attttcgcca gtatatcatc cagcatcgaa tggggcagca gaaaatgctg tgaagctatg      3600
     taagcgaacc ataaaaaaag caatccgaga ttcagtagac atcgacacag ctttacaaac      3660
     ttacctatta gcttatagga atagtattca aagcactaca ggggaaagcc ccgccatgtt      3720
     attgcagcgt agaccgttgc gttctcggtt ggatcttttg cgcgcagacc gtgcacgcca      3780
     ggagcgggtt gatagggtgc agcgccagca gatgttgagt tcaggtgctg aacccacgca      3840
     acagtacgct gctggtgaga ccatatgggc taggaactac ggtagctcag acaaatggat      3900
     gaaaggaacg ttagtcaacc aacagggttc gcggaggtat gtggtaaagg gtgatgatgg      3960
     tcgacttctt acacggcata gtgatcaaat caggctcaga actcgacgtt caagtttagt      4020
     gtacccagaa ttaatatccg aagaacgggt aggtgggggt gtcgttgagc agcagcagca      4080
     acagctatcc ccgaggatat cgaacgcaaa ggttggcgag ggggcgggga gtggtgaagc      4140
     aggaagcgag gacttagtag tgagtgacgt accggaggaa acagctagta agacctcgcc      4200
     gggccgtgat acgccgccgc tggcaactga tagcaatgtt gcgagctccg tgagtcgtcc      4260
     cacccgcgtt cgcaggaaac caatcagata tgggttcgag tttgattaga aggaagcagt      4320
     tttacttttt gttatgttat gttatcaatg tgtatactta tagttttagc gtggagg         4377
//
ID   Gypsy-22_TrNi-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-166
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 179-179 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 166 BP; 38 A; 35 C; 37 G; 56 T; 0 other;
     tgtgatgtaa gtggatagat tataattatc tgtagacaag tcgtccgtgt ttacaggttg        60
     cggagcaacc gcggttgtct tgtctctcaa taaatgtcgt aatatccaca acgtcttttg       120
     ctttattccc gttcccgata gtttcccgag gttcggagac ttcaca                      166
//
ID   Gypsy-22_TrVa-I repbase;    DNA;    INV; 5157 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5157
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 267-267 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..5093
FT                 /product="Gypsy-22_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPETDPAATPSQTSGTSSVIPSNASIEDKLNALTNVV
FT                 SQLVQLQIQSQQVTPQTRFSFSAYQENVETVEEYFNRFKLQLELCKLPDST
FT                 WASHLRVHMGGQLNTVLTNISYPTPVESLSFEQITSTLQSYYSKTRNKFSE
FT                 IINFRKLLQKPDESVVEFATRLKAAARFCQFENFLDFSLTVQFMHGISRDD
FT                 IRNEIVCKQPATFECALKIATDLEASREASNQLKPKSEAAATVAVNKFSDS
FT                 RPRIKKSNLHNSRARSLSRSSSGNKFKRKSSFSSNSDKLSNPASSKDSCLS
FT                 CGGTHNRRTCKYRNYQCGHCKRRGHLAQICMTKNSTIKSYASMEENGSSPY
FT                 AEEISSEFLQPDSETLPFSVNKIATVINHHDINQPPPPCYLSVLINDTPLK
FT                 MELDTGGACSIINISLFEETFPNVGLQRTNRCFYSFTKEKVQCLGYAPVKV
FT                 SFRKRKKVLNLFVVDRHVDSVFGREWIIHFKDLLSLDELFPSPMNQVKSSH
FT                 GNLPPEISSSAADRLKNLLKRYEPIFNDTAGTLEGPPSQLHLKADARPIFA
FT                 RAREIPLALRDRFASEIDSKLKSKLYTKVTHSQWASPTHLVVKNDKLRITG
FT                 DYKYTLNPQLVIEEYPIPKIEDLFNKLKDSKFFCKLDISDAFMSLPCDEAT
FT                 CELMTLNTPTHGLIRPLRAQYGVASIPAIWQRRLEELLQDINGQLNFFDDI
FT                 LLFADSVEKLFLILEQVLDRLLKAGLKLKRSKCAFLLTSVEFLGHRIDGSG
FT                 LHKLDKHISAILNAPQPMNSDELQSFLGKVVYYHSFIPHLSTITFPLREML
FT                 KIKGKLQWTKEGLNAYQKLKELLVSDQVLIPYHPNLPIVLATDASPVGLGA
FT                 VLSHVMPDGSERPIGYASKALNQTEKAYPQIDREALAVVWGIKRFFQYLYG
FT                 RKFTIYVDNKPLSHIFAPNALLPKFTLSRCANYASFLSNFVYDIKHKRSED
FT                 HQNADYLSRLPSMGNQHNASSSVNGSMFKQQQISDDFDSFVQQQTLQLPVT
FT                 AKEIASETITDSKLAPLLQALQEGKKLTELGYKGRESDYSISNGCLMLGHR
FT                 VVIPEKLKKRLLFELHLGHIGITKMKGIARSLIYWPKIDQDIESVAKNCLT
FT                 CLEHAKMPPKENTHLWEYPNEPWFRIHLDYAGPILGKYLLVIVDAFSKWSR
FT                 AIVTSSMTSETTCEHLHHLFSLYGVPDTVVSDNGKQFTSDEFIDFLRMQGV
FT                 RYHKRTAPYHPATNGQAERFVQTIKNAIKTMNPTQKSLQKCIDAFLQRYHR
FT                 APHPSTGQPPSFLFFGRIIKTRIDQVSPIVTVTDSTSEVRSQHHGPKLRTF
FT                 EVGSRVMFRNYSGRCRWLPGTVMAKWGKLHYSIDHNGVCHKRHIDQLLSHP
FT                 KQVRFADEEEGSEEDRNLSNTENYNLRHYAPARTHPEMQSTNRPVSQPDSQ
FT                 RASPPSIVSSPSHSRLLPLSPQIASSSKTLPQTVSNSPLTPAQQTVLSPQT
FT                 SNPSLTPAQQTVLSPQTSNPSLTPAQQTVLSPQTSNSSLAPVRQTVSHLSQ
FT                 PSSSELLKPKSATPKQKIPQSLSKDQQLPHASSTDDSPQIFSTPTASFADI
FT                 PLHHPAAARSKSTQVKPRSSTNLTPTARPNEVRRSTRERKPRRPYSPSEST
FT                 PCKKDPEVEITFF"
XX
SQ   Sequence 5157 BP; 1525 A; 1293 C; 911 G; 1428 T; 0 other;
     atggcgacga gttaaaagaa cccattgtct cggcaatcct ccgattttcg cgaagtgcgg        60
     cagtattcgc taatcgaatc tcgtgattct cgtgtgttcg aatacgctcg gcatccgcgt       120
     taaccccacg gttctcacgc tgcacgctca agtttttccg aaattcactt ttcgaatagt       180
     gatctcgcga aaatatcgtc atgcctgaaa cagatcctgc cgcaactccg agtcaaacca       240
     gtggaacttc ttctgtgata ccgtccaacg cctcaatcga ggacaaactt aatgctttaa       300
     ccaatgtggt ctctcaactt gttcaacttc aaattcagtc ccagcaggta acacctcaaa       360
     ccaggttttc tttcagtgca tatcaagaaa atgtcgaaac tgttgaggaa tatttcaacc       420
     gttttaaact gcaactcgaa ctttgcaagc tgcctgatag cacatgggct tcgcacctcc       480
     gagtgcatat gggaggtcaa ctcaacactg ttctcaccaa catttcctac cctactccag       540
     tggaatctct ttcattcgaa caaatcactt ccactctaca gagttattac tctaaaacca       600
     gaaataaatt cagcgaaatt atcaatttta gaaaactatt gcaaaaacca gatgaatcag       660
     ttgtcgaatt tgcaactcgt ctcaaagccg ctgctcgctt ttgtcaattt gaaaatttcc       720
     tagatttctc tcttacagta caatttatgc atggaatcag ccgtgacgat attcgtaatg       780
     aaattgtctg caagcagcca gcaacctttg aatgtgctct caaaattgca acagacttag       840
     aagcctctag ggaagcgtcc aaccagttga agcctaaatc tgaagcagcc gctacagttg       900
     ctgtaaataa attttcagat agccgtccaa ggatcaaaaa atccaattta cacaactctc       960
     gtgcccgcag tctaagtcgc tcctcctcag gtaacaaatt taaacgcaaa tcctctttca      1020
     gttctaattc tgacaaactc tcaaatcctg ccagctctaa agattcatgc ttatcttgcg      1080
     gtggtaccca caatcgtaga acatgcaagt acagaaatta tcagtgtggc cattgcaaac      1140
     gtcgagggca tcttgcccaa atatgcatga ctaaaaatag cacaatcaag tcctatgcca      1200
     gtatggaaga aaatggttcc tctccttatg ctgaagagat aagttcagaa tttcttcaac      1260
     ctgactctga aactctccct ttttcagtca acaaaattgc tacggtgatc aaccatcatg      1320
     acataaatca accacctccg ccttgttatt taagtgtcct cattaatgac acaccgctaa      1380
     aaatggaatt agatactggt ggcgcctgtt ccattattaa catatccttg ttcgaggaaa      1440
     ctttcccaaa tgttgggctt cagcgtacta atcgttgctt ttacagcttc accaaggaaa      1500
     aggtccagtg tttaggttat gctccagtaa aagtttcttt ccgcaaacgg aaaaaagtat      1560
     taaatctttt tgtggttgac cgtcatgtcg atagtgtttt tggaagagag tggatcattc      1620
     attttaaaga tctcctttct cttgatgagt tatttccttc tccaatgaac caagtaaaaa      1680
     gttcacatgg taatctgcct ccagaaataa gctctagtgc tgccgaccgt cttaaaaatc      1740
     ttttgaaaag gtatgaacca attttcaatg atacagcagg taccctcgaa ggtccgcctt      1800
     ctcaattgca tctaaaagca gatgctaggc cgatttttgc aagagcccga gaaataccgc      1860
     ttgcgctacg agaccggttc gccagtgaaa ttgactctaa attaaagtca aaactttaca      1920
     ctaaagtcac tcactctcaa tgggcttccc caacgcatct tgtcgtaaag aatgacaaac      1980
     ttcgcataac aggggactat aagtacacac taaaccctca attagttatc gaagaatatc      2040
     caatcccaaa gattgaagat ctgttcaata aattaaaaga ctctaaattc ttttgtaagt      2100
     tggacatttc agatgcattc atgagtctcc cgtgcgatga agcaacttgt gaacttatga      2160
     cgttgaacac gcccactcac ggcctcatcc gtcctcttcg tgcccaatat ggtgtagcta      2220
     gtatccctgc aatatggcag cgacgtctcg aagaacttct ccaagacata aatggtcagt      2280
     taaatttctt cgatgatata ttactctttg cagattctgt cgagaaactt tttcttattc      2340
     tggaacaagt cttggatcgt ctcctcaaag ctggattaaa actgaaacgc tctaagtgtg      2400
     cattcctatt aacaagtgta gaattccttg gtcaccgcat tgatggttct ggtctccata      2460
     aattagacaa gcacatcagt gcaatactaa acgctccaca acccatgaac tcagatgagc      2520
     ttcaatcttt cctcggtaaa gtagtttact atcactcatt tatcccacac ctttctacaa      2580
     tcacctttcc actcagggag atgctgaaaa tcaaaggcaa actccagtgg acaaaagaag      2640
     gtctcaatgc ttaccaaaag ctaaaagaat tgctagtatc agaccaagtt ctgattccat      2700
     atcacccaaa tctgcccata gttcttgcaa ccgatgccag cccagttggg cttggcgctg      2760
     ttttatctca tgtgatgcca gatggtagtg aaaggcctat tgggtatgct agtaaagccc      2820
     taaatcaaac agagaaagcg tatccacaaa tagatcgaga agcccttgcg gttgtgtggg      2880
     gtataaaacg gttctttcag tatctttatg gccgaaagtt tactatttac gtagacaaca      2940
     aacccttgtc gcatatcttt gcgcccaatg cattgttgcc taaatttacg ctatctcgtt      3000
     gtgccaatta tgcgtcattc ctatctaatt ttgtctatga tattaagcac aaacgttcag      3060
     aggatcatca gaatgctgac tatttgtccc gcctgccaag catgggcaat cagcataatg      3120
     ccagcagctc agttaacggg tcaatgttca agcagcaaca aatttcggac gatttcgact      3180
     catttgttca gcagcaaact cttcaactac ccgtcactgc caaagagatc gcctctgaaa      3240
     caataaccga ttccaaatta gcaccactgc tacaagccct gcaagaaggt aagaaactaa      3300
     ctgaactagg ttataagggc agagaatctg actactcaat ttcaaacggt tgcctgatgc      3360
     ttggccatcg ggtcgtcatt ccagaaaaac tcaagaagag gcttctcttt gaattgcatc      3420
     ttggccacat cggaataact aagatgaaag gcatcgccag gtcgcttatc tattggccaa      3480
     aaattgatca ggacatagaa agtgtcgcga aaaactgtct aacttgtcta gagcatgcca      3540
     aaatgccgcc caaggaaaat actcaccttt gggaatatcc gaatgaacca tggttccgta      3600
     ttcacttgga ctacgcaggt cctattttag ggaaatattt acttgtcata gttgacgcct      3660
     tctcaaaatg gtcaagagca atcgtgacat cctcaatgac atcagaaaca acatgtgaac      3720
     atcttcatca tctattctct ctttacggag ttccggatac tgtagtttct gacaatggga      3780
     agcaattcac gtcagatgag ttcatagatt tccttagaat gcagggggta aggtaccaca      3840
     aacgtactgc accctaccac cccgcaacca acggtcaagc ggaacgtttt gtgcaaacaa      3900
     ttaaaaacgc catcaaaact atgaacccta ctcagaagtc actccaaaag tgtatcgatg      3960
     cttttttgca gagataccac agggctccgc acccatccac aggacaacct ccatctttcc      4020
     tattcttcgg tcgtataatc aaaactagaa tagaccaagt ctcaccaatt gttacagtta      4080
     ccgacagtac ttcagaagta cgaagccaac accatggtcc caagctccgc acctttgaag      4140
     tgggcagccg tgtcatgttc cgcaactaca gtggtcgatg tcgctggctc ccaggcactg      4200
     tcatggccaa atggggaaaa ctgcactatt ctattgatca caacggtgta tgtcacaaaa      4260
     gacatattga tcagttactg tctcatccaa agcaagttcg ttttgctgat gaggaggaag      4320
     gaagtgaaga agatcgtaac ctcagcaata ctgaaaacta caatttaagg cactacgcgc      4380
     ctgctcggac tcatcccgaa atgcaatcga caaatcgtcc tgtatctcag cctgattctc      4440
     aacgagcttc gcctccgtct attgtatctt ctccttcaca ttccagactt ttgcctttgt      4500
     ctccacaaat tgcttcgtca agcaaaactc ttccgcagac tgtctccaat tctccgttaa      4560
     ctcctgctca acaaactgtt ctctctccac agacttccaa tccttcgtta actcctgctc      4620
     aacaaactgt tctctctcca cagacttcca atccttcatt aactcctgct caacaaactg      4680
     ttctctctcc acagacttcc aattcttcat tagctcctgt tcgacaaaca gtttcccact      4740
     tgtcgcagcc ttcttcgtcc gagctactta aaccgaaatc agcaactcct aagcagaaaa      4800
     ttccgcagtc tctctctaaa gatcagcagc ttccacatgc ttcatcaaca gatgattctc      4860
     ctcaaatatt ctctacacca actgcatcat tcgctgatat tcctctgcat caccctgccg      4920
     ctgctcgttc gaaatcaacg caagttaaac ccaggtcttc aacaaacctc actccaactg      4980
     cgagacctaa tgaagtcaga agatccacaa gagaacgcaa acccagacgc ccatactcac      5040
     caagcgagtc caccccttgt aaaaaagacc cagaagttga aattactttt ttctagtcaa      5100
     tttgtttttt ttatgtactt atcatttgtt aattattttt aaatgtgctg ggagaat         5157
//
ID   Gypsy-22_TrVa-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-22_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 326-326 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 60 A; 40 C; 35 G; 82 T; 0 other;
     tgttatatcc tcgacatgta tatataaatg ttaagttggt agtacgtagt actatatgag        60
     ttggttggca cacttgcctg tcaagctctc tttttgtctc tgacgcgaac agctgttata       120
     taataataaa atgaagtctc gaacggtacg tccgactctc tctcttttct ttattcaaat       180
     catttattaa tcaatcttct cgagtaaaga tttatca                                217
//
ID   Gypsy-23-I_NVi repbase;    DNA;    INV; 9054 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-23-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-9054
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 783-783 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           707..2440
FT                 /product="Gypsy-23-I_NVi_1p"
FT                 /translation="RRREQVSLTRRSGLRWLEVRQGHREVNRVHVSQSSRG
FT                 SSKSGGSRDGRESYESEVRIINKQRRRKRAQESRERAVLRTRRTADRLLYY
FT                 SMDEDEQLTYAFGARGEGELRTDRRAPRVAETIKRSEPSRKGTPTVLEWDN
FT                 YLPRRYSESESESFRSRGSAREVRRPIERVVKPEYREDSRDRRERTNPSRR
FT                 GDDLSNQKLQTVKILRSWGISKFAGEEKSEDPEEFLEQIDECRDGSGISDA
FT                 ALLAAIPCCLTKKASRWYRTARAEIFSWPEFCKKFRNHFMKFYDREDLMDD
FT                 LQRRTQAEGEKITSYLASFKYIISRFRHPPSEREQVELAYRKLHPKYREAI
FT                 GDKIIETLDDIERYGRIYERKKDLDLRYLPPPAAEKMRVPGAAYTGSRKPK
FT                 VAAVQEEEEGVAGVESAAGGKKGGKGKGKNKAGNKGGAQASPPEVSAESES
FT                 APTPSPLSYAAAVQNSAKGGVAHANQANSQQAGNQLPNSNNAPNRDSNAKA
FT                 KAVASGGAVGAGGEAKRQYLLNASGANKPNVAEGFTSARINEFAGACYTCQ
FT                 GVGHRASECPEVVCFACRRKGHVSRQCPNK*"
FT   CDS           join(2525..6040,5877..6551)
FT                 /product="Gypsy-23-I_NVi_2p"
FT                 /translation="MSQVRSFIWKSGKREERGTEINPVSRNSIAFTCERDR
FT                 TSSESSVAVEEPSVVTSESDVDSRESGSVAKIHPRQVCWGVSGKTIKHLDE
FT                 KAVCQTPAERTLPEVQEKSAAELQQSLKQRGLGQLKASEAFGRSVPWVNGL
FT                 PAWSEGEFSRDAIEAVQSRAAKRKEVTFEENSKDSSDGDEAAGYAKLGEIA
FT                 RVIELIEEREVPAEPAQVKQNLAGRSKSVGEIQVEKKTESAKSADGPFSEL
FT                 LEKEQTLAGELEREIDESEVVVAGLTADNRNYVFVSLGGKRILALLDPGAT
FT                 LSMVSPKVAEHYRGRLLPINMRVRTATGKLSKVQGVMRVKVDVDQNVREID
FT                 FKVVPDLDHDAILGMDFCEKYDVDTRHGRKLWRVCEGPWHAFASATRNKET
FT                 LVFAECAGISEVEPDQREEIQRVVDRVLANQPEGAGLTWMAEHHIVVTDSR
FT                 PIRHRWRRRSPKTMQLMVEEVERLFFEGFIERSAGDYTNAPVMVRKADGTF
FT                 RFCIDFRDLNKITRRDAYPMKSMDSILDRLRRARYLSKIDLRQAYYQIPLA
FT                 KESRKYTAFALPGSGLWQFTRMPFGLVNAPMTLQRLLDALFGPEYEPHVFS
FT                 YFDDLVIATETFEEHVEWTERVFSKLKEAGLVVNKKKCQFFCEKIQYLGFV
FT                 LDRDGLRPDPEKVAPVLDYPAPKNVKQLRRFLGMVGWYSRFISRDSELKIP
FT                 LVKLLRKGQAWQWGDEQQESFDAFKKALTEAPVLARPDFNKPFTLQTDASS
FT                 HSIAAVLTQEGEDGEHPILYVSRVLTPAERNYTVTEKEALAVVWAIKKLRP
FT                 YLEGYKFRVITDHSALKWLQNLRDPTGRLARWALELQQWDFEIEYRRGALN
FT                 HLPDALSRAFEPEEEVASFGEIKDPEYLKLLIEVEKFPLKYSNWRVEDGRL
FT                 YRFRKEPMLDPIIDRDEGWRLVVPVEQRERVLTDAHCTPSTGHLGVEKTYD
FT                 RVAREYYWKGVYHDVYNFVNECETCRMYKVSQKGRQGLLGKRIVERPWVVV
FT                 AADLMEFPPSKLRNKYLVVFQDLFTRWVEVKQIRKADGRSVARAFEELVLF
FT                 RWETPEYFLSDNGKEFDNQYLAGVLKEYGVKHVTTPPYHPQANPVERSNRT
FT                 LNTMIASFVKERPPELGCACARVSSCGEHSRTVVSQRLACVSELRQTPATG
FT                 GEFAQRSGAEKGCKKDHQNWDVHVHEFRHAVNTAVQSSLNVSPAFLNYGRH
FT                 PRPVASLRREVEQRKGVEKVNPEDWANRMKRLDALRDLVSQHIDQAQEKQA
FT                 REYNKGRRVVTFQVGSWVDRRTHPLSGAAKKFSAKLVPKWEGPFVIEEVLG
FT                 PTVYKLGPAPGQDASRRIAKADIIAATYTEQSSSEGSEPRLIFFIVFRGTR
FT                 CRGRCRDSVATAAPTKRKREFCWRSHERASRSS*"
FT   CDS           join(6311..8185,8110..8892)
FT                 /product="Gypsy-23-I_NVi_3p"
FT                 /translation="AGTCTRAGCESEDSEGRYHCGDIYRAEQLGRQRTSPD
FT                 FLYSFQGNEMPWKMPRLCGHSSPDEEEERVLLEEPRESEPQQLGQAGAETS
FT                 VIPQRSAEESVIMMQPGAALPAPDTRETGQEASVSELEPPTAVTVLAALNQ
FT                 ESELEYEECGEGEASVSADTVAGAFEPAAAEVVASVAAVTAEETAKGNPSW
FT                 ADEVEGQPSQEEPQAIQEVTECASQAEQAQHGEMRPPIKIPPLPPIVSAVT
FT                 FNPNFMLPDEPERYAWLQPSDASVLFQRSLAERHGAIPKSWGTLRRPRTIL
FT                 PLQKPTGRAAEKETTPERMETEEEPEDRSXVEXESEKAKKELEYLQAGTGS
FT                 STSNGSTPGLRSPVKPMQVVTPTAQRSGAPIPRMIPIDAGQAALVSWDEDW
FT                 DNEGQQPPARIAAQVPARVEEEEPEPPRRKSRKRKKAYNPRRQLTGDDYFP
FT                 LHLESREASPEPGAPVRPGQSREEGAFAGAPLRVVKKTSRPSSPSVGKFRC
FT                 PGEAAWRRYNFPLSRLPPRRGGVLFRDGQPVPVVPAIDPPPYCCFNCWDRN
FT                 HAVRSCPEPERRDYCANCGRHGVRIEECPRCAEEFKRRERQRQPEDRSGSP
FT                 PRKLTSRSRRDELERERKSVRDVSEKSKADFEKSERRIREREEECKRRQRE
FT                 ELEKAAERRHQEMRREEERRERDERWRAEEERRQREEEQNRRYVEQRKAER
FT                 RAEEARQEAEALRLEEQRRVENNRLREEAARLLEQREEQALRAELLRQLNE
FT                 RKQSEMQRVAAVRVEEEARRAFEQRRLREQQEELLRTEELRRQIREAELRT
FT                 AEELRRIETQRQALEARLLQPVRGVVPEREGRVLGPPRVPHLPAEPAQTRD
FT                 PVRDALALLEGLQGVTNETKDAVLRRVYGQPQ*"
XX
SQ   Sequence 9054 BP; 2364 A; 1939 C; 3022 G; 1725 T; 4 other;
     taaatggcgt acaccatggg gctcgacgga aattagtgta aactggaaaa tcgaaaaatt        60
     gtacgcgaag aatttaagcc ggaagcgtgt gtttgaaaga agtatgtgtg tgtgagaaga       120
     gtgtgcgttc gcgtttaggg taagagatga gtgcacgaaa ttcggtcatg gccggtagag       180
     gcaggggaaa cgttgagcac gcaatgatgc gggagctcat gcgagatcaa gtgttgcgtg       240
     ggatcaagct gaaagtagca tggcttaccc cagctgtgtt agtagctgag ttagaggaga       300
     ggaggcttag caccaggggc acggtagagg tcttgcagaa tcgtctgacg tacgctgtga       360
     ttcgtgccaa aagaccagag ctggtggtgc cttgattccc gaacgctcag ccgcaaaaaa       420
     cagggactag atttatcgcg agttaccgtg cgggagatgc tctcgagatt tcgcggttct       480
     gagaccgagt atacttacta cacgccgcag atggtaagag atggcgttct tccgacggct       540
     ccagagttgc gaaacgagca gctcaacgtg agagctgccg caacgccgag aatataggca       600
     ccaagggcac aagcgctcaa attgcaagtg ccgagagaac aggtgctgag atctccggag       660
     agtcagagag gtcgtggcat gcgacaaacg actcctgtag tcttagcggc ggcgggagca       720
     agtaagctta acgagacgtt ctggtttacg ctggctggag gttcgccagg ggcaccggga       780
     agtaaaccgc gttcacgtta gtcagagctc gcggggcagc agcaaatcag gcgggtcgcg       840
     tgacgggaga gagtcgtacg agagtgaggt taggattatc aataagcagc ggaggcgtaa       900
     gcgggcgcaa gagagccgtg agcgcgctgt cttgcgaact cgccgaacag ctgatcgtct       960
     gctgtattat tcgatggacg aggatgagca gctgacttac gcgttcggtg ctaggggcga      1020
     aggagagttg cgaacggatc gccgtgctcc tcgagtggct gagacgatta aaaggagtga      1080
     gccgtcgcga aaagggacgc cgactgtgct cgagtgggat aattatttgc cacgccgtta      1140
     ttcggaaagt gagagcgagt ctttccgtag ccgcggaagt gcgcgtgagg tgaggcgacc      1200
     gattgagcga gtagttaagc cggaatatcg agaggatagc cgagataggc gggagagaac      1260
     gaacccgtcg cggcgcggag atgacctgtc gaatcaaaaa ttgcaaaccg tcaaaatttt      1320
     gagaagctgg ggaatttcca agttcgcggg cgaggaaaaa tcggaggatc cggaggagtt      1380
     tctcgagcaa attgatgagt gccgagacgg atcaggaatc tccgacgcgg cgttgttggc      1440
     cgcgattcca tgttgcctga cgaagaaggc gtcgaggtgg tataggacag cgcgtgcgga      1500
     aattttctcg tggccggaat tttgtaagaa atttaggaat cacttcatga aattctatga      1560
     ccgcgaggat ctaatggacg atttgcagcg ccggacgcaa gcggaggggg agaaaatcac      1620
     gagttattta gctagtttca agtatataat ttcgcgattt cgtcatccgc cgtcagagcg      1680
     tgagcaggta gagctggcgt accgtaaact ccatccgaag taccgtgaag cgattgggga      1740
     taaaataatc gagacgctcg acgatatcga gaggtatggc cggatttacg agagaaagaa      1800
     ggatttggac ttgcgttacc ttccgccgcc agcggctgag aagatgcgag tgcctggcgc      1860
     ggcgtacacg ggctcgagaa agcctaaggt agccgcagtc caggaggaag aagagggagt      1920
     tgctggggtt gagagtgcgg ccggaggaaa gaagggtggc aagggaaagg ggaaaaataa      1980
     ggctggaaat aagggaggcg cgcaggcgtc gccaccggag gtatcagctg agtctgaaag      2040
     cgcgccgacg ccgtcgcctc tctcatatgc cgctgcagtt cagaactcgg cgaaaggcgg      2100
     agtggcccac gctaatcagg cgaactcaca gcaagccgga aatcagctgc cgaatagcaa      2160
     caacgcgccg aacagggact cgaacgctaa ggcgaaagct gtagctagtg gaggtgcggt      2220
     tggcgcgggc ggagaggcca aaaggcagta tctcctgaac gcaagcggcg cgaacaaacc      2280
     gaacgtggcg gaaggattta cgagtgcgcg tattaacgaa tttgcggggg cgtgttacac      2340
     ctgccaggga gtaggtcatc gcgcgtcaga gtgcccagaa gttgtctgct ttgcgtgccg      2400
     gaggaaggga cacgtgagcc gacagtgtcc gaataagtag acgcagggga ctttcgtaga      2460
     gaataacttc tggcccgcga gaacaatgcc aagggtgtaa caggcccggg gttacggtta      2520
     ggacatgtcc caagtgcgct cctttatttg gaaatctggg aaacgcgaag agcggggcac      2580
     agagataaat cctgtgtccc gcaattcgat cgcgtttaca tgcgagcgag atcggacgag      2640
     tagtgagagt agtgtagccg ttgaagagcc tagtgtagtc acgagtgaga gtgatgtaga      2700
     ttcgagagag tcgggctctg tcgcgaaaat acacccgcga caagtctgct ggggagtgtc      2760
     ggggaagacg ataaagcacc ttgacgagaa agctgtatgt cagactcctg cagaaagaac      2820
     gttgccggaa gtgcaggaga agtctgcggc tgagcttcaa cagagcttga agcagcgcgg      2880
     gttgggacag ttgaaagcga gtgaagcttt cggccgctcg gtgccgtggg ttaacggctt      2940
     gcctgcgtgg agcgaaggtg agttctcgcg cgatgcaatc gaggcagttc aatctcgcgc      3000
     cgcgaaacga aaagaggtga cttttgagga gaattcaaaa gattcctctg acggtgacga      3060
     ggcggccggt tacgcgaagc tgggagaaat cgcgcgagta atcgagttga tcgaggagag      3120
     agaggttcct gctgagcctg cgcaggtgaa gcagaaccta gccggaagga gtaagagtgt      3180
     aggggaaatt caagttgaga agaaaacgga gtcagccaaa tcagctgatg ggccgttttc      3240
     tgaactcctt gagaaggagc agacgcttgc cggagaatta gagagagaga tagatgagag      3300
     cgaggtagtg gtagcggggc tgacagctga caatcgaaat tatgtgtttg tcagtcttgg      3360
     cggcaagaga attttagcat tgttagatcc aggagcgacg ctctcgatgg tctctccgaa      3420
     agtagcggag cactatcgag gtcgtctgct gccgattaac atgcgggttc gaactgcgac      3480
     cgggaaattg agcaaggtgc aaggggtcat gcgtgtgaag gtagatgtag atcagaacgt      3540
     gagggaaatt gatttcaagg tagtgccgga tttagatcac gacgcgattt tagggatgga      3600
     tttctgcgaa aaatacgacg tggacacgag gcacggccgg aagctgtgga gagtctgcga      3660
     agggccgtgg cacgcgttcg cgtcagcgac tagaaataaa gagacgctag ttttcgcaga      3720
     gtgtgcgggt atttcggaag tcgaaccaga tcagcgcgag gagattcaga gagtcgttga      3780
     tagggttttg gcgaatcagc cggagggcgc gggtctgacg tggatggcgg agcatcatat      3840
     cgtcgtcacg gattcgcggc cgattcggca tcgctggaga cggcgctcgc cgaaaaccat      3900
     gcaattgatg gtcgaggaag tagagcgttt gtttttcgag gggtttatcg agagatctgc      3960
     gggagattac actaacgcgc cggtcatggt tcggaaggcc gacggtacgt tccggttttg      4020
     catagatttt cgcgatctaa ataagattac gcgaagagat gcgtatccga tgaagagcat      4080
     ggattcgata ttagaccgtc taagaagggc gcgctattta tcgaaaattg atttacgtca      4140
     ggcgtattat caaattccgc tcgctaagga aagccggaag tatacggcgt tcgcgttgcc      4200
     aggctcgggg ctgtggcaat tcacgcgaat gccgttcggt cttgtcaacg cgccgatgac      4260
     gctgcagcga ttgctcgacg cgttgttcgg tccagaatac gagccgcacg tgttcagtta      4320
     tttcgatgac ttagtgatcg ctaccgagac gtttgaggag cacgtagagt ggactgagag      4380
     ggtattcagt aagctgaagg aggcggggtt agtcgttaac aagaagaagt gtcagttttt      4440
     ctgtgagaaa atccagtacc tagggttcgt gctcgatcga gatggactaa ggccggatcc      4500
     ggagaaggta gcgccggtgc tggattatcc tgcgccgaaa aacgtgaaac agttgcgtag      4560
     attcttgggg atggtagggt ggtattcgcg ctttatcagc cgggattcag agttaaaaat      4620
     tccgctggtg aagctgttga gaaaagggca agcgtggcag tggggtgatg agcagcagga      4680
     gtcttttgac gcatttaaaa aggcattgac ggaagctccg gtgctcgcga ggccggactt      4740
     taataagcct tttactctgc agaccgacgc gagctcgcac tcgatagccg ccgttctcac      4800
     gcaggaaggt gaggacggag agcacccgat tctctacgtg agtcgagtgc tcacgccggc      4860
     ggagagaaat tacactgtaa ccgagaaaga agcgttggcc gtagtttggg cgattaaaaa      4920
     gcttcgtccg tatttggagg gctataaatt tcgcgtgatt acggatcact ccgctctaaa      4980
     atggcttcag aatttacgcg atccgacggg taggttagcg cgttgggctt tagaattgca      5040
     gcaatgggat tttgaaatcg aataccgtag gggcgcgttg aaccacttgc cggatgcgtt      5100
     gtcgagagcg tttgagccgg aggaagaggt ggcgagtttt ggggaaatta aagatccgga      5160
     gtatcttaag ctgcttatag aggtagaaaa atttccgctt aaatactcga attggcgtgt      5220
     cgaggacgga aggctttata ggtttcgaaa agagcccatg ctcgatccga taattgatcg      5280
     ggatgagggt tggcgattag tagtgccagt agagcagcgt gagcgcgtcc ttacggatgc      5340
     tcactgcaca ccgtcgacgg gtcatttggg cgtggagaag acgtacgatc gggtagcgcg      5400
     cgaatattat tggaagggag tgtaccacga tgtgtataat tttgtgaacg agtgtgagac      5460
     gtgccggatg tacaaggtgt ctcagaaggg aagacagggc ctgctcggca agagaatagt      5520
     cgagaggcct tgggtggtgg tagcagcgga cttaatggaa tttccaccga gcaaattgcg      5580
     aaataaatac ttggtcgtat tccaagattt attcacaagg tgggtggaag ttaagcagat      5640
     ccgtaaagcg gacggaaggt cagtggctcg tgcgttcgag gaacttgtgt tgtttagatg      5700
     ggagacgcca gagtatttct tgtcggataa tgggaaagag ttcgacaacc agtatttagc      5760
     cggagtgttg aaggagtatg gtgtgaagca cgtcacgacg ccaccgtatc atcctcaagc      5820
     gaaccccgtt gaacggagca atcgcacttt gaatacgatg atagcgagtt tcgtgaaaga      5880
     aagaccacca gaattgggat gtgcatgtgc acgagtttcg tcatgcggtg aacacagccg      5940
     tacagtcgtc tctcaacgtc tcgcctgcgt ttctgaatta cggcagacac ccgcgaccgg      6000
     tggcgagttt gcgcagagaa gtggagcaga gaaagggtgt tgagaaagta aatccggagg      6060
     attgggcgaa tcgaatgaaa cgtcttgatg cgctgcgcga cttggtttca cagcacatcg      6120
     atcaagcgca agaaaaacaa gcgagagagt acaacaaagg ccggagggta gtgacctttc      6180
     aggtgggaag ttgggtggat cggcgcactc atccactttc gggcgcagcg aaaaagttct      6240
     ctgcaaagct agtgccgaag tgggaagggc cgttcgtgat agaggaagtg cttggcccga      6300
     cggtgtataa gctgggacct gcaccagggc aggatgcgag tcggaggata gcgaaggccg      6360
     atatcattgc ggcgacatat accgagcaga gcagctcgga aggcagcgaa cctcgcctga      6420
     ttttctttat agttttcagg ggaacgagat gccgtggaag atgccgcgac tctgtggcca      6480
     cagcagcccc gacgaagagg aagagagagt tctgctggag gagccacgag agagcgagcc      6540
     gcagcagcta ggacaagccg gagcggagac ctcagtaatt ccgcagagat cagccgagga      6600
     gagcgttatt atgatgcaac ccggagctgc tcttcctgca ccggacactc gtgaaactgg      6660
     ccaggaggcc agtgtaagcg agctggagcc accgacggca gtaaccgtcc tggcagctct      6720
     aaaccaggag agcgagttgg agtatgaaga gtgtggtgag ggggaggcct ctgtatcggc      6780
     tgatacagtg gcaggagcct ttgagccagc agctgcggag gttgtggcgt cagttgctgc      6840
     cgtgactgcg gaggagacgg caaaagggaa tccttcctgg gccgatgagg tggagggcca      6900
     gcccagtcag gaagagcccc aagccattca ggaggtcact gagtgcgcga gccaggcgga      6960
     gcaggcgcag cacggggaga tgagaccacc gattaagatt ccgcccctgc ctccaatcgt      7020
     ttcggctgtg acgttcaacc cgaacttcat gctgccggac gagccggagc ggtatgcgtg      7080
     gttacaaccc tctgatgcgt ctgttttatt tcagaggagc ctggccgagc gacatggagc      7140
     tatcccgaaa agctggggca cccttcgccg cccccgaacg attctgccgc tgcagaagcc      7200
     aacggggaga gctgcagaga aagagacgac gccggagcgt atggagactg aggaagagcc      7260
     ggaagatcga agcraggtrg agwtagagag cgaraaggcg aagaaagaat tagagtacct      7320
     ccaggcggga actggcagct cgacgagcaa cgggtcgaca ccggggctgc gctctccagt      7380
     caaacctatg caggtcgtga cgcccacggc gcagagaagc ggtgcgccca ttccccggat      7440
     gatcccgata gacgctgggc aggcggctct agtcagctgg gatgaagact gggataacga      7500
     gggccagcag ccaccggcaa gaatagccgc tcaagtgcca gcgagagtag aggaagagga      7560
     gccagagccg cctcgtagga agagtcgcaa gaggaagaag gcttacaatc cacgtcgcca      7620
     gttgactggg gacgactact tcccgttaca cttggagtca cgggaagctt cgccggagcc      7680
     cggagcccca gtgagaccgg gtcagagccg agaagaaggc gcattcgcag gcgcaccact      7740
     gagagtagtg aagaagacga gtaggccctc ttcaccgtct gttggaaaat tccgatgccc      7800
     aggagaagca gcgtggcgga gatataactt ccccttgagc cgtctaccac cgcgaagagg      7860
     aggagtcttg ttcagggatg gccagccggt gccagtagtg ccagccatcg accctccgcc      7920
     ttactgctgc tttaactgct gggatcgaaa ccacgcagtt cggagctgcc cagagccgga      7980
     gagacgcgac tactgtgcca actgcggtcg gcatggagtt aggattgagg agtgccctcg      8040
     ttgtgcggag gagtttaaga gaagagagcg tcagagacag ccggaagata ggagtggttc      8100
     tcctcctaga aagctgactt cgagaagtcg gagagacgaa ttagagagag agaggaagag      8160
     tgtaagagac gtcagcgaga agagttagag aaggcagcag agagaagaca tcaagagatg      8220
     agaagagaag aagaaagacg ggagagagat gaaagatgga gagctgaaga ggaacgtcgc      8280
     cagagagaag aagagcagaa ccgcagatat gtggagcagc ggaaggcaga gcgacgcgca      8340
     gaagaagctc gacaggaagc tgaagctttg agattggagg agcagcggag agtagagaac      8400
     aaccgtctgc gagaggaagc cgctcgtctc ctggaacagc gagaagaaca ggccctgaga      8460
     gctgagcttc tgcgccagct aaatgagaga aagcagtcag agatgcagcg agtagcagca      8520
     gtgcgagtgg aggaagaagc gagaagggcg tttgagcaac gacggctgag ggaacagcag      8580
     gaagagcttc tgagaaccga agagttacgg cgacagattc gggaggcaga actccgaaca      8640
     gcggaagagc tgagaaggat tgaaacccag cgtcaagcac tagaggctcg actcctgcag      8700
     ccagtccggg gagtcgtgcc ggagagagaa ggaagagtgt tgggaccacc aagagtgccc      8760
     cacctgccag cagaaccagc ccaaacaaga gatccagtga gagatgccct ggcgctgctg      8820
     gaggggcttc aaggggtcac caatgagact aaggacgcgg tgcttcgccg ggtctacggt      8880
     caaccccagt agacgcagga gaagagggat gagaccagcc ggaggggacc agccggaagc      8940
     acagagagca gagcaaaggc ccgcaagggc cggtaagtac ctttcttgca tttatagccg      9000
     aaggacgatg gtagacggag taatcaggga ttactccggt ctagtgaggg ggat            9054
//
ID   Gypsy-23-LTR_NVi repbase;    DNA;    INV; 1595 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1595
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 784-784 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1595 BP; 375 A; 339 C; 607 G; 264 T; 10 other;
     tgcgacgagg cgactcgtcg tgcgccgtgt ccttcggcgg gctctgtgtc gtgtgcgcga        60
     tttgagctaa cgtgtgtgtt ttcttgtttt tctcgtgcga gtgttggtgc gaggaatcta       120
     ggaagccggt ggacaaggag cgacgacaag gcttcaggga agcagcggat tttgagaaga       180
     agaagagtgt gagagagttc gcggaacact tgtaactccg gctgcgtccg gagaattcgc       240
     ggaaatctgt agcgagagtg tgcgggtacg tgtgccgagc aacgtagggg agagcgtaag       300
     cggggaatcg agccgtttga ggaaggggcc gtatcgacgg ccactagccc gattccaggc       360
     tagtcggggc gcgagttcag cgcggtcgtg gggactggcc gagtcgcgcg cgctgattgg       420
     ccgggccgga gcggagagag cgcgcatcgc cgaagcggtc ggcgcggcgc ggcacttctt       480
     gtttgactgt tgcccaagac gcacgtattg agcgacagtc gcacgagctt ttcgttggta       540
     ttgcgaattc gagggtgtcg agatcgtgag tgtcgggata gcgcgttcgt gtgtgcaagg       600
     agtcaaaaga gagccagtgt gagagagttg ggggagagtc aagcgaggcg aggcgagaag       660
     aagacgttgc ttccaatcca gaccagccaa ggtgacgagg atcgtgagga gacgaccagc       720
     gacgcagggc cagtccagga cagggaggtg cggaggaaga agacgaggcg aggaagaaga       780
     cgagggcgag gaagaagacg ggagatcagc attcagacgg agccggaaga cagccggagg       840
     acagcgtctt gtgagcgacc tgtaagtcrc agcttactca ggctgaggcc tgacctttgt       900
     actgcgtgcc gcgacggtga ttcaagcgtg agtgagagag agagagagag agagagagaa       960
     agagatctgc gttgagagag agagaamagc attgtcgaga aggcctaaat cgtgagcgtc      1020
     acgacagcgc ggccggattg ccgtccagac aaagagccgc gtgggtgcgg ttcgaggaat      1080
     cgcgcgcgag cattgggtcg agagaaggga gagtcgcagc gcggtcggag gggcgccgcg      1140
     gaagcagcgg gggcctgcct tatcggcggg cagacgaaca ggccgtgagg gcgaagtgtg      1200
     cgagggagag aaagagagag agagagagag agagtgtgtg agtgagcgct agarcgtgcg      1260
     cgacgcgagc gcaagcgagc ggcgacgacg gtgaggtgta cggaggcaac aagcctcgtg      1320
     agagtgcgag agcgcgcatg agtgtgtgtg tgmgagcgtg caagacgagt cggccgcgaa      1380
     gccgacggcc gtagagtgtc agccgaatcc gagttaataa agaggtcgta aagagaattt      1440
     agagagttgt gatttctskm cccttacaca ccgctgtaac ccgaacagcg gaatyctcgc      1500
     ggaactycyt ccgagatcta cagaagaaat aatagtgtcg aggcttcggg acggggttga      1560
     ggcgcgagtt ctcaccccag attggccacg tcaca                                 1595
//
ID   Gypsy-230_AA-I repbase;    DNA;    INV; 2691 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-230_AA_;
KW   Gypsy-230_AA-LTR; Gypsy-230_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2691
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1063-1063 (2011).
XX
DR   [2] (Consensus)
XX
CC   'TGTATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..2689
FT                 /product="Gypsy-230_AA-I_1p"
FT                 /translation="MQNENISPLRASSGGEPLAFKPQLQCSSSTSGIQLNM
FT                 IENTFARLIDQLNFSKTSVTNLTQELSAMRSEINSMRADASRLNLVVKELR
FT                 TSSLVPQQISNPNGGGYFGCDESKHAKNQEVNRGAIIKKVAISSRLTAKEY
FT                 VLSDDDGRSHGSVFRKSIDRDVVNQSNNNVLGNGPNYYSTDRPNVQNLIDG
FT                 RDRACEELNVKIGEGRHATDRVSGSCFGSEAYGGLCGDYHNLAHAHENGIG
FT                 QEPVLSVSEAETAFSKFSGSDCYPVRKWINDFEELSDCIGLTELRKFVIAK
FT                 RQLTGLAKMSLNTTSNVSNWRTLKDFLITEFDFYENCAVVHERLRNRKRNL
FT                 GENVLEYFLQMREIGAKANVDISSIITHTINGINDNGPDKTILYGSKTLDE
FT                 FREKLRVYQGIKDNKYGRDREYHSPTSKRFFSKGRPNGQNNFEDQFNSPLK
FT                 FVKCYNCRKDGHISSECTREIQNNYVYLCYSNPKSSKTSKLSLLINKIPFQ
FT                 ACFDSGSNVSLLREAWATKLNLRIDRNDRKRLMALKGAIWTLGSVSLTIEI
FT                 EKTPLRITFDILRNKDMPHNIVLGENLLMFGDVNITANETKFCPKENLIIR
FT                 KEPSNSGIYHSSHFKNQPKNAKNYFEMCGITKKKPSLKYDVYMTETVKIPY
FT                 KHQHTHISRSQKQATIMMRRPRTESKSEIMRSGRDWKRSDESRSSGMSKAR
FT                 HQTGRSDDTIRAGWWSGWPI"
XX
SQ   Sequence 2691 BP; 905 A; 420 C; 613 G; 753 T; 0 other;
     aatttggggg ctcgtccggg aacgcgggaa gaaactttcg ggatattcgt tggagcgcgc        60
     cggtgggaag atgttttaaa agaacagcag ttgttaaacc gccagttgcc ttgtaattga       120
     attgcaaaga aaattatttt aaagtgaact gaagggaaat taaaatgaat tgttttaatc       180
     taatatttta tacaataagt tacttttaag acattgaatt tgattgatta gtgataagtg       240
     gatttgaatt gaaaaccaac gatcgtggca gtgtaaatta attagcaagc tctgcatgat       300
     agaggtgttc tctaaattca gttgaaaaaa agctaagtgt gaactcatat aaaggagcag       360
     agtgccacgt cataatttac gggtttgacc tggggttaag ggtcattgta cggtgcgtgc       420
     gaatgaacaa acatcaaact atactcgtgc gatacagtgg cggtaaatag tagagaagcg       480
     agtgttctgt ttgcttgttt ttttctcctt tttgaaagta acggagacaa tgcagaacga       540
     aaacatttcg cctttgcgag caagcagtgg tggggaaccc cttgctttca aaccccaact       600
     gcaatgttcg tcttccacaa gtggaattca attaaacatg atcgaaaata cttttgctcg       660
     tttaatagat caattgaact tttccaaaac gtctgttaca aacttgactc aagagcttag       720
     tgcgatgcgc agtgagataa actctatgcg ggcagacgca tcccgtttaa atttagtagt       780
     taaagaatta cgcactagct ccttggtacc ccagcaaata agtaatccta atggaggcgg       840
     ctattttggt tgtgatgaaa gtaaacatgc aaaaaaccaa gaagtgaacc gtggtgcaat       900
     aataaagaag gttgcgataa gctctagact gactgctaaa gaatatgtgt tgagtgacga       960
     cgatggtcgt agtcatggca gtgtatttag gaaaagtatt gatcgagatg ttgtgaatca      1020
     atcgaacaac aatgtgttgg gtaacggccc aaattattat tcaactgata gaccgaatgt      1080
     gcaaaatctg atagatggtc gtgatcgtgc gtgcgaagag ttgaacgtca agatcggcga      1140
     aggccgacat gctacagaca gagtgagcgg gagctgtttt ggctctgagg cgtacggtgg      1200
     cttgtgtggt gattaccata atttggccca tgcgcatgaa aatggtatag gacaagaacc      1260
     agtattatcg gtaagtgaag ctgagacagc attttctaaa ttttctggaa gtgattgtta      1320
     tcctgttcga aaatggatca atgattttga ggaactgtca gattgtattg gcttgacaga      1380
     attacgtaaa tttgtgattg cgaaacggca attgactgga ttagctaaaa tgtctttgaa      1440
     caccactagc aatgtctcta attggagaac gttgaaagat tttttgataa ctgaatttga      1500
     cttctacgag aattgtgctg ttgtacatga aagattgcga aatcgcaaaa gaaatttggg      1560
     cgagaatgtc ttagagtatt ttctgcaaat gcgagaaatt ggggcaaagg ccaatgtgga      1620
     tatttcatca attataacac acacaattaa cggcataaac gacaatggtc cagacaagac      1680
     tattttatat ggatcaaaga ctttagatga gtttagagaa aagcttcgtg tttatcaagg      1740
     gataaaggat aataagtatg gaagagatag ggaatatcat tctccaactt cgaaaagatt      1800
     tttttctaag ggacgaccaa atggtcagaa caattttgaa gatcaattta acagccccct      1860
     taagtttgta aaatgttaca attgtagaaa ggatggtcat atttcaagtg aatgcacaag      1920
     ggagatacaa aacaattacg tttatctttg ttattccaat cctaaatcgt caaaaacaag      1980
     taagttgtcg ttattgatca ataaaattcc atttcaagca tgctttgact ccggctctaa      2040
     tgtttcttta ctacgagaag cgtgggcaac taaattaaat ttgaggatag atcgaaatga      2100
     tcggaaacgt ttgatggcgc tgaagggagc aatttggact ttgggtagtg tttcgttaac      2160
     catagaaata gaaaaaacac ctttgagaat tacatttgat attttaagaa ataaagatat      2220
     gccacacaat attgtgttag gggaaaattt gttgatgttt ggtgatgtaa atattacagc      2280
     aaatgaaact aaattttgtc caaaagaaaa tttaattata agaaaagaac cttccaattc      2340
     aggcatttac cattcttctc attttaaaaa tcagccaaaa aatgctaaaa attattttga      2400
     aatgtgtggt attactaaga agaaacctag tttgaaatat gacgtttata tgactgaaac      2460
     cgtgaaaatc ccctacaaac accaacatac acacatttca aggagtcaga aacaggcaac      2520
     gataatgatg aggagaccta gaaccgaatc caaaagcgag atcatgcgaa gcggtagaga      2580
     ctggaaacga agcgacgaaa gcaggagttc cggaatgagc aaggcaagac atcagactgg      2640
     acggtcagac gacaccatcc gggccggatg gtggtcagga tggccgattt g               2691
//
ID   Gypsy-230_AA-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-230_AA_;
KW   Gypsy-230_AA-I; Gypsy-230_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1064-1064 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 263 BP; 69 A; 54 C; 61 G; 79 T; 0 other;
     tgggaataac atcataagca tccctacgtg ttcgccctgt tacgcattgg cttccgatga        60
     tcaacggatc aagcagggga acgcttacga agtatggagt attcataagt gagagctatc       120
     ggtcggtcac gttttctgtt gaatataagt ttcaaacatt atcgccgtgc ttagaaggtt       180
     tcgatatccg aagttgtcct ccaaaacgcg tatctttcca gcttatgtgg gaaaagtgtg       240
     gctgttaact agtatttcct aca                                               263
//
ID   Gypsy-231_AA-I repbase;    DNA;    INV; 5205 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-231_AA_;
KW   Gypsy-231_AA-LTR; Gypsy-231_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5205
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1065-1065 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [2385-2885] - Reverse transcriptase
CC   Positions [4020-4490] - Integrase core
CC   'CTAAC' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(792..3941,3945..4904)
FT                 /product="Gypsy-231_AA-I_1p"
FT                 /translation="MAQSALATNIEPYRKGAGFTEWAERLEYLFLINSVQE
FT                 EHKKAYLATLGGPVVYSELKLLYPNTDLNNIAYNDMISKLKARFDKVAPDI
FT                 IQRLNFNNRIQQKDESVEDFVLAVKLQAEFCTFGDYKSIAIRDRIIAGIRD
FT                 KALQQRLLNEENLTLSLAEKIIATWEVAGANSRGLADRVTDNTGVERVDAI
FT                 ASTSKFNGNPRTTLEKLLATLDLARTANSDHNEGHDKGPVKSRLGYRPNSI
FT                 GRQTNNGERMGPYYPRMRGDWKSNRERQRGQYADFVCDFCGIKGHIKRKCF
FT                 KLKNMKRDAVNFVDQGSGHDKDDSLERLFNRLKADDSGSEDDWDAGDFDTC
FT                 MNVTSTKNNPCLLELLVEGKNLQMEVDCGASVSVIGKKEYWKMFKKPVKQC
FT                 NRKLIVVNGDRLKIEGEASLLVEFKGKVENLKILVLNSDYNFIPLMGRTWL
FT                 DVFFPDWRNFFTNSDSINKLLVGNSDTIVNEIKQKFSKVFEKDFSLPIVGY
FT                 EAELVLKSDVPIFKKAYNVPYRLKDKVIEYLDKLERQNVITPIKISEWASP
FT                 VVIVMKKNNDIRLVIDCKVSINKVIIPNTYPLPTAQDLFAGLAGCKFFCAL
FT                 DLEGAYTQLMLTERSRKFMVINTIKGLYVYNRLPQGASSSASIFQQIMDQV
FT                 LQGIDFVYCYLDDVLIAGKNFEECKERLLIVLERLSQANIKVNWDKCRFFV
FT                 TELEYLGHIISDRGLLPCPDKTLTIQKAKAPKNETELKSYLGLINYYNKFI
FT                 PRLSIKLYHLYNLLKNKVKFIWDVQCEEAFKESKNSLVNAKFLEFYDPKKP
FT                 LVVVSDASSYGLGGVISHIIDGAEKPISFTSFSLNSAQRKYPILHLEALAL
FT                 VSTVKKFHKYLYGQKFQVFTDHKPLVGIFGKEGRNSIYVTRLQRFVLELSI
FT                 YEFDIQYRPSSRMGNADFCSRFPLDQLVPENSDTEGVNNLNFGKELPIDYK
FT                 TIAKWSKQDEFLQQIVSYLQNGWPERLERRYVDIFANHHDLEIIEDCLLYQ
FT                 DRVVIPQIMQNKVLDLLHANHAGIVKMKQLARRYVYWFGINSDIKFVPSCD
FT                 ICSSMTILPKPKLLSKWIPTTKPFSRIHIDFFYFEHHVFLLIVDSYSKWLE
FT                 IEWMKNGTDARKVINKLVVFFARFGLPDMLVSDGGPPFNSNAFISFLERQG
FT                 IKVLKSPPYHPSSNGQAERFVRTVKEVMKKFLMDRTVMDLELENQISLFLI
FT                 TYRNNCLTKEGNCPSEQIFSYAPKTLIDLVHPKKHFKQNLQEILPHEDTNI
FT                 SKRNGDVHTGLNDPLCNLTAGEELWYKNHNPHVKARWIKASFIKWHSQNTL
FT                 QVQIGSVPIMAHRSQVRRCNESDNNMPNAVVLLRRCDGRCAKGSVYHWSRG
FT                 EGRGTSS"
XX
SQ   Sequence 5205 BP; 1687 A; 864 C; 1135 G; 1507 T; 12 other;
     actgacggcg aggctggtgc ggaaaccact gtagttccag gagatcatcg agaagacgat        60
     tagggaatcc agcggattca gcggtaaacc aaccggcaaa acgtacagtc gtttgatcct       120
     gcaagaaagt ctggtcatct ggattcggcc attgtgaggt agaagtttct tctatagtaa       180
     gtagcgtgcg tctatctatt atctgaagga gaaatttagc aggacgctcc aaaattgtgt       240
     tcttaacgaa aaactatgct atcggcacta acctttaaca aagattttgt gtaaaagaaa       300
     cagatagtga cgctttatag tttgcattat tcatgcgtgc aatagacttc ggccgtgttg       360
     ttctcgaata atacgaggtt tttttgtatt cgatcattta ggtctgaaat tcattttggt       420
     attgtgatat tgtgaacatt acgcagcgtt acgtttgagg tgatttggct csgtgcagcg       480
     gakcaaagca aggacatccg gagtgtgtat tccgtgggcg gcacaagaca cgtatacgca       540
     acacgtcgac aaaggtcaat aaaccacaaa gcmmcmcagg gagcttcatk ggkgastcca       600
     atctgttttt ttttcctata accgctttgc gacaaatttt gtttttcctt ttatgatttt       660
     ctggctgatt tttggctaaa ttttaccctt ttcaatcatt tacaatagcc tttattgaaa       720
     attctttgca cacaatagaa tacctaattc aattgtgttt caaacaatag cccttacaat       780
     cctgataaat tatggcgcaa tctgcccttg caaccaacat tgagccttac agaaaaggtg       840
     cgggtttcac agaatgggct gaaaggctag aatatctgtt tttgataaac tccgttcagg       900
     aggaacacaa aaaggcgtac ttggctactt taggtggccc tgtagtctat tcggaattga       960
     aacttttata ccccaatact gacttgaaca acattgcgta caatgacatg atttcaaaat      1020
     tgaaagctcg attcgataag gttgcaccgg atattattca gcgcctcaat ttcaataacc      1080
     gtattcaaca aaaagacgaa tcggtggaag attttgtcct ggctgtcaaa ttacaggctg      1140
     agttttgtac ttttggcgat tataagtcta ttgccattag ggatcgcatt attgctggaa      1200
     tacgggataa agctctccag cagcgactcc ttaatgagga aaatttgacg ctttcgttag      1260
     cagaaaaaat tattgccacc tgggaagttg ctggagctaa tagtaggggt ttagcagacc      1320
     gagtaactga caatactggg gtggaaaggg tagatgcaat tgcatcgact agcaaattca      1380
     atggaaatcc acgcactaca ttggagaagc tattagctac actggatttg gcgaggactg      1440
     caaacagcga tcacaatgag ggacacgata aaggaccggt gaaatcaagg ttgggatata      1500
     gacccaactc tataggcaga cagacgaaca atggtgaacg aatgggacca tactatccca      1560
     ggatgcgagg cgactggaag agcaacaggg aaaggcagag agggcaatat gcagattttg      1620
     tgtgtgattt ctgcggaatc aaaggccaca tcaagcgcaa gtgtttcaag ctgaaaaata      1680
     tgaaaaggga cgccgttaat tttgtggacc aaggatcagg acatgacaag gacgatagtt      1740
     tggaacggct gttcaacaga ctgaaggcag acgattccgg aagtgaggat gattgggatg      1800
     caggtgattt tgacacatgc atgaatgtga cgtctactaa aaacaatccc tgtttattag      1860
     agttattggt ggaaggcaaa aatttgcaaa tggaggtaga ttgcggtgcc tcggtgtcgg      1920
     taattggcaa aaaagaatat tggaaaatgt ttaaaaaacc agtaaagcaa tgcaacagaa      1980
     agctgatagt tgtgaacgga gatagactca aaattgaggg agaagcaagt cttttggtcg      2040
     aatttaaagg gaaagtggag aatctaaaaa tattggtact aaatagtgac tataatttca      2100
     tcccattgat ggggagaact tggttggatg tgtttttccc agattggagg aattttttca      2160
     cgaactcgga tagcattaac aagttgttag taggaaacag tgatacaata gtaaatgaaa      2220
     tcaaacaaaa attttctaaa gtgttcgaga aagatttttc tctgccgatt gttggttatg      2280
     aagcagaatt agtgttaaaa agtgacgtgc ctatttttaa aaaggcttac aatgtccctt      2340
     atcgtttaaa agataaggta atagaatatt tagataaact tgaaaggcaa aacgtaatta      2400
     cacctattaa aataagcgaa tgggcttcac ctgtggtaat cgttatgaag aagaataatg      2460
     acatacgtct ggttattgat tgcaaggtat caattaacaa agtgattata ccaaatacat      2520
     atcctttacc cacagcacaa gatttgtttg cgggtttagc tggatgcaaa tttttttgtg      2580
     ctttggattt agaaggggca tatacgcagt taatgttgac tgaacgatca agaaagttca      2640
     tggttattaa cactattaag ggactctatg tatataaccg attaccacag ggagcttcat      2700
     caagtgcttc aatctttcaa caaattatgg accaggtact tcaaggcatc gatttcgttt      2760
     actgttattt agatgatgtg ctcatagctg gaaaaaattt tgaagaatgc aaggaaagat      2820
     tgctaattgt tttggagaga ctttctcaag ctaacataaa agtaaattgg gacaaatgcc      2880
     gttttttcgt tacagaactt gaatatttgg gacacattat cagtgacagg ggtttattgc      2940
     catgtcccga taaaactttg actatacaga aggcaaaagc tcccaaaaat gaaaccgaat      3000
     tgaaatctta cctgggtctc ataaattact ataataaatt tatccctcgt ttatcaataa      3060
     agctgtatca tttgtacaat ttattaaaga acaaggtgaa atttatctgg gatgttcagt      3120
     gtgaggaggc ttttaaagaa agtaaaaatt cacttgtcaa tgcaaaattt ctggaatttt      3180
     atgatcccaa gaaaccttta gtagtagtkt cagacgcttc aagctacggc ttgggaggag      3240
     taatttctca tattattgac ggagccgaaa agccaataag ttttacatcg ttttcattaa      3300
     actcagcgca gcgcaaatac cctatattgc accttgaagc tttagcttta gtgagtaccg      3360
     taaagaaatt ccacaagtat ttgtatggac agaaatttca agtttttaca gaccataaac      3420
     cattagtagg aatatttgga aaggaaggaa gaaattccat ttatgtgaca cgcttgcaac      3480
     gattcgtact agagttatcc atttatgagt ttgacattca atatagaccc tcatcccgaa      3540
     tgggaaacgc agatttctgc tctagattcc cgttggatca attagtccca gaaaattcgg      3600
     atacggaggg tgttaacaat ttaaattttg gaaaagaatt gcctattgat tataaaacga      3660
     ttgctaaatg gtccaaacaa gatgagtttt tgcaacaaat tgtttcttat ctacagaatg      3720
     gctggcctga aagattagag aggcgttatg tcgacatttt tgcaaatcat catgatttgg      3780
     aaattattga agactgtttg ttatatcagg acagggtggt gattccacaa attatgcaaa      3840
     ataaagtgtt ggatctgctg catgccaatc acgctggtat tgtaaaaatg aaacagcttg      3900
     caaggcgtta tgtctattgg tttggtataa atagtgatat agamaagttt gtaccttctt      3960
     gtgatatttg tagcagtatg acaattctac caaagccaaa actgttatcc aaatggatcc      4020
     ctaccactaa gccatttagc agaattcata ttgatttttt ctattttgag catcatgttt      4080
     ttttactaat agttgacagt tactctaaat ggttagaaat tgaatggatg aagaatggta      4140
     ctgatgcaag aaaggtaatt aataagttag tcgtattttt tgcgagattt ggtttaccag      4200
     atatgttggt atctgatggg ggtccaccgt ttaattctaa tgctttcatt tcctttttgg      4260
     agagacaggg cattaaagtt ttgaaaagtc caccttacca tccatctagc aatggccagg      4320
     ccgaaagatt cgtgagaacg gtcaaggaag taatgaaaaa gtttttgatg gatagaactg      4380
     tgatggattt ggagttggag aatcaaataa gcttattttt aataacgtat agaaataatt      4440
     gcctaacaaa agaaggaaat tgcccatcag aacaaatatt ttcgtacgca ccaaaaacgt      4500
     tgattgacct agtccaccca aagaaacatt ttaaacaaaa tttgcaagaa atattgccgc      4560
     atgaagatac taacatctct aaacggaatg gagatgtcca tacgggatta aatgatccac      4620
     tgtgcaatct gacggctgga gaagagttgt ggtacaaaaa ccacaaccct catgtcaagg      4680
     caagatggat taaggccagt ttcattaaat ggcattctca aaatacattg caggtgcaaa      4740
     ttggaagcgt accaataatg gcccaccgca gccaagtgcg tagatgtaac gagagtgaca      4800
     acaatatgcc gaacgctgtg gtcttactgc ggcgttgtga tggaagatgt gcaaagggat      4860
     cagtctacca ctggagcaga ggcgagggtc gaggaacctc cagttgacac ctgcaatcca      4920
     accaagcgta aaagaaagca cgatgaattg gaccacagtg tttctctaag aaggtcaatg      4980
     aggcctaaaa aggcgaagaa agatggtatt tatgtttaca attgattata twggtgaatt      5040
     cgatatttcc attgtattat tgwacttcaa ccttgaactc aaaatctttt cgaatatctc      5100
     gattaattaa tatttttcat aacaacgaat tcggaatttt gtattatact ttagattaag      5160
     ctgtcggtaa aaaccgaaac tcgatcatcc gaaggggtga ggagt                      5205
//
ID   Gypsy-231_AA-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-231_AA_;
KW   Gypsy-231_AA-I; Gypsy-231_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-231
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1066-1066 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 231 BP; 76 A; 52 C; 36 G; 67 T; 0 other;
     tgtagcatac ttaattttat aaataagttt tccgtgtgtc atcaaatgac agctctgaaa        60
     atgtagttca tataacttgt atatgcgtac tcacacacat gagcatagac aaccataaat       120
     aggtgatctg aaaatagaga gcccagttca gtctggtttc aacttacaac gagtaaagtt       180
     cgtttcgact tcaccctcac tccgaaagtg ccccattcct caaactcaac a                231
//
ID   Gypsy-232_AA-I repbase;    DNA;    INV; 4806 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-232_AA_;
KW   Gypsy-232_AA-LTR; Gypsy-232_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4806
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1067-1067 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3678-4166] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2598..3401,3405..4511)
FT                 /product="Gypsy-232_AA-I_1p"
FT                 /translation="MSPRLLQYPDFTQKFILTTDASDIGCGAVLSQISEAG
FT                 ERPIAFASKTFIPAERNKPTILKELIAIHWAINYFEAYLYGRRFTVRTDHR
FT                 PLVYLFGIKNPTSKLTRIRIDLEGYDYDVVYIKGKENVAADALSRIATTSD
FT                 ELKISNVMIVNTRSMTRKAQKLVKNNLKDISIENEKKETDHLSTYETERPT
FT                 ETRKMMKLCTAVVGNTLKFMILKKNCKTIVAQVHQDVRNGSHAFECALPEI
FT                 EKITKRLGAKNLALPANDFIFTIVPLNLKTIANKILKTLKIIIYKEPIFIN
FT                 NPEEIQTLLSNHHNTPVGGHVGQFRLYLRLREKYRWRDMKRSIAQFVQACE
FT                 LCKRNKIIKHTKEPMVITTTPSKAFEVISIDTVGPLPKSNKNNRYCITIQC
FT                 DLTKYISIIPIPNKEANTIARALVENFILTFGNFLELRSDQGTEYNNEVLE
FT                 QISKLLQIKQTFSTPYHPQSIGSLERNHRCLNEYLRSFTNEHQSDWDDWIK
FT                 YYEFSYNTTPHTDHNFTPFELIFGRKASLPQDVLENSNEPIYNFESFSNEL
FT                 KFKLEKSHEIVKQKLLEHKYRRKKEFDNNINPIKVAINDMIFLKNENRRKL
FT                 DSFYLGPYKIIKISEPNCEIEHIISGKSVNVHKNRIIKA"
XX
SQ   Sequence 4806 BP; 1816 A; 898 C; 838 G; 1251 T; 3 other;
     cggacgggct atgaaatggc gaccgcgagt taatccgaac cagtaatcgt cggaaaaagt        60
     caagtgagaa taattgtgaa taatccagac ccgtgcaagt tagtgaaaca ccacgaagaa       120
     tgggctccga ggaatcaaaa gcccgagtga atcataacgg tgatagtcac atcgaaattg       180
     tgaacaacca gttagagcac acgacaacac tgaactccat aacaacctgg tagtggttca       240
     tatcggctgg tgtaacaatt caacttgttt taagtttgtg gggagaaatc caaaggcgaa       300
     tgagcaagtc aaaaagggca actaagcaag ctcagcgagc tcacgatgag ggagcaacag       360
     cccaacaaca cagcaacagc atcagcagca acagaacaac gagagcggtg agaagaggaa       420
     aatgcctaag tcacaaactg gggacatccc tcgtcaagct tacgatgggc tccggactca       480
     actcttcctc gatgcgttgc gttattctcg tcgatggaat ttgcagcggc agaagacagc       540
     ggcgacgaaa cagcactggc aaaaatgatt gctgtaaaaa taaggggcac tgtatacttc       600
     tgacaaaatc accaaccaag atttcaaaat tccgaggcaa ttatagccaa ggacacagtt       660
     atggccaagg acaaaatttt agaggtcaaa acttcagagg acaaaatttc agaggccaat       720
     ggaatagagg aagaggacga tacgaaacac gctctaccta tttcatgcag cctataccgc       780
     aggcaataca acccgttttc aacaattgcc gccgtagcta ccaacaaaca accagttacc       840
     agcagccgca accaacagca acaacagccg gcacaaaaca acactttttt aggcacacag       900
     tttggtcgac atttacagga atgcatcgac ctccaattac gttattttaa aaatagattt       960
     atcggaaacc cagtgtactt ttattgttga cacaggtctg atatatctat cattaaaagt      1020
     cgtaaagtaa aatcgtctca aatttactac cctgaagaaa aatgcgtcat atcaggtaca      1080
     ggagatgaag gaattcactc tttaggaagt actttcgcta acatattagt tgagggtata      1140
     cctattcagc agaaattcca aatagtttca aatgatttcc ctattccaac ggacggaatc      1200
     attggaaaag atttcttggc aagatataag tgtaaaattg actacgaacc gtggatgttg      1260
     tcatttactg tagacaatca gcttattttg atacctattg aagataattt ccaaaacaat      1320
     ttctttttac ctccacgatg cgaagttacc cgttacatac caaatcaaaa tttacaagag      1380
     gatatggtgg tacactcaca ggaaattcaa ccaggaattt tttgtggaaa tacgatcata      1440
     tcagctaaag aaccaatatt aaaattcatt aatacaccga taaagcagtt tatattactt      1500
     acacagattt taaccctata tggaaccact tagaactttc gagtagtacc acacaaaaaa      1560
     cactcaacaa ataaaaccag acgaaataaa attttgaaaa aattgatact cagcacctta      1620
     ctccacagct aagcgagaac tgaaaaattg atcattcgat atgaagatat ttttaacctg      1680
     gaagatgaga aactgtcaac caataatttt tatacgcaga acatcagtct taacgataat      1740
     gttcctgtgt atatacccaa ctataaaact attcatgccc aaggtgaaga aatcgaaagg      1800
     caagttcaga aaatgttaaa agacgaaatt atagaaccct cagtttcgtc atataattcc      1860
     ccgattttgc tggtcccgaa aaagtcggat aattcagaaa acaaatggcg tctagttgtt      1920
     gattttaggc aactaaacaa gaaaattatg ccagacaaat ttccgctacc aagaattgaa      1980
     agtatactag accaacttgg tagagcaaaa tattttagca cactggatct gatgtcaggt      2040
     tttcatcaga tccccttgga cagtaattcc aggaagtata ccgcattttc taccaactct      2100
     gggcactatc agttcaaacg attacctttt ggattaaata ttagtccaaa tagttttcaa      2160
     aggatgatgg ctattgctat ggcaggttta accctgaacg tgcatttatc tatatagatg      2220
     atattgttat tatcggatgt tcgttgaaac atcatttgtc aaatttagaa tcagtatttg      2280
     aacgaatgag gaaatataat ttaaaattaa attatccaaa tgtaaatttt taaaaaccga      2340
     agtgactatc ttggtcataa aataaccgat cagggaatat tgcccgacga ctccaaattt      2400
     aaagccatta gggactatcc aattcccaaa aatgtagacg atgtgcgaag attcgttgct      2460
     ttttgcaatt attatcgaga tttgtcgaaa actttgctga catagcttac ccattaaacc      2520
     aattactgaa gaaaaacgtt acttttacat ggactgataa atgtcaaaat gcattcgatc      2580
     tgttgagaca acagctgatg tctccaagat tattacaata ccccgatttt acccaaaaat      2640
     ttatactaac gacagacgcg tcagacatag gatgcggagc tgtcttatct caaatttctg      2700
     aagcaggaga acgacctatt gcgttcgcaa gtaagacgtt tattccagca gaaagaaata      2760
     aaccgaccat actaaaagaa ctaatcgcca tacattgggc cataaattat ttcgaagcct      2820
     atttgtatgg aagacgattc acagtacgaa cagatcacag acctcttgtg tatctattcg      2880
     gaatcaagaa tccaacctcg aaattgacta gaattcgtat cgatcttgaa ggatacgact      2940
     acgatgttgt atatattaaa ggtaaggaaa atgtagcagc ggacgcatta tcgcgaatag      3000
     ctactacatc tgacgaatta aaaatttcta atgttatgat agttaatact aggtctatga      3060
     cccgtaaggc acaaaaatta gttaaaaata atttaaaaga tattagcatt gaaaatgaaa      3120
     aaaaggagac tgatcacctc tctacatatg aaactgaacg ccctacggaa acaagaaaaa      3180
     tgatgaagct gtgcacagcc gtagtgggca atacattgaa atttatgata ttgaagaaaa      3240
     attgcaaaac gattgttgca caagtgcatc aagacgttag aaatggaagt cacgcattcg      3300
     agtgtgctct tccagaaatc gaaaaaatta caaaaagact aggcgcgaaa aatttagcat      3360
     tgccggcaaa cgattttatt tttaccatag taccattaaa tktattaaaa actatagcta      3420
     ataaaatatt aaaaacttta aaaattataa tttataaaga accaatcttt ataaataacc      3480
     cggaagaaat tcaaacatta ctaagcaatc atcataatac accagttgga ggacatgtag      3540
     gtcaattcag actgtaccta agactccgag aaaaatatag atggcgcgat atgaaaaggt      3600
     ctattgcmca attcgtccag gcctgcgaat tgtgcaaaag aaataagatt atcaagcata      3660
     cgaaagaacc aatggtcata accacaacac catcaaaagc tttcgaagta atatcaatag      3720
     acacagttgg tcctttaccc aaatctaata aaaataaccg gtactgcatt acgattcaat      3780
     gtgaccttac aaaatatata tccataattc cgatccctaa taaagaagca aacaccatag      3840
     ctagagcatt agtcgaaaat tttattctga cttttggcaa ttttctcgaa ctacgatctg      3900
     atcaaggtac tgaatataac aatgaagtac ttgaacagat tagtaagtta ctccaaatta      3960
     agcaaacctt ttcaacacca tatcaccctc aatctattgg ttcattggag agaaatcaca      4020
     gatgccttaa tgagtatctg cgatcgttca ccaatgagca tcagtctgat tgggatgatt      4080
     ggatcaaata ttatgaattc tcatacaaca caaccccgca cacagatcat aattttaccc      4140
     catttgagtt gatatttggc agaaaggctt ctctcccgca agacgtatta gaaaatagta      4200
     atgaacccat ttataacttt gaatcattca gtaatgaatt aaagtttaaa cttgaaaagt      4260
     cacatgaaat agtaaaacaa aaattattgg agcataaata ccgaagaaaa aaagagtttg      4320
     ataataacat aaatcccatt aaagttgcaa ttaacgacat gattttctta aaaaatgaaa      4380
     atagaagaaa actagattcc ttttatcttg gaccttataa aataataaaa atcagtgaac      4440
     caaattgcga aatagaacac ataatttcag gaaaatcagt aaatgtacac aaaaatagaa      4500
     taattaaggc gtaaataact ttaactagag tcccaccgag cctaacctct cacaaaaaaa      4560
     aaaaaaaawa tatgaaactt aaaaaaataa aataacgggg taggtgaaag tttccagcat      4620
     atatgctgag aagtgccaaa actctattag gtagaaataa agttatttag ttaagacaaa      4680
     gtgttagaaa cttaaggaaa accaacatat tgtaaagctc aaacaaagac atctgggaag      4740
     gcaaaacgca agaatgattt cattacactt tctatttcat tacatcattc tttaaaaggg      4800
     gggagg                                                                 4806
//
ID   Gypsy-232_AA-LTR repbase;    DNA;    INV; 504 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-232_AA_;
KW   Gypsy-232_AA-I; Gypsy-232_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-504
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1068-1068 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 504 BP; 149 A; 112 C; 96 G; 147 T; 0 other;
     tgtgctatac acgcatcgac ccaaaaacat ccttccagca tctatcagcc aagcaataaa        60
     tacaacacag aatgttttgt cacaaattga ctaggtcagg tcagcatgcg taagcaattt       120
     gcatcaaggc actcgagtgc gctacatgtt atgctgactg catgtttact cgttggtggt       180
     cgtccgtttg gacgatgcgc taggctcata tttcaaccca aattgttatt gccaaatatt       240
     gtcaccgccg acccaggcat ctttgccatt agcataagat tgtatgattg tattatttgt       300
     gttaatgtat tacagcaagc cactaaataa aaggagctga tgttccaatg atagaacagt       360
     cttgttctga ctctgaatct atgcgtttca atgcacctct ggtgtatacc gaaacatccc       420
     tctagcaacc tggtaatcag gtactgctaa ctatttagga atagactaag atcagtaaca       480
     tatcgatgtg caatacatag tcca                                              504
//
ID   Gypsy-233_AA-I repbase;    DNA;    INV; 7189 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-233_AA_;
KW   Gypsy-233_AA-LTR; Gypsy-233_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7189
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1069-1069 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5188-5670] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           375..1352
FT                 /product="Gypsy-233_AA-I_3p"
FT                 /translation="MDGYRINANELLEEELDYELSIRGHSTDDLLTAKRRT
FT                 ARKLLRVLEDPNRVWTSSYDLQQELVETPIKLQEIENLLREGRHDGCLSRL
FT                 VHYHKRIRRYVPQSTKQKDDQIRLMFVIGSVAEKYFDVDFCEATFKVSTSK
FT                 VVPAQAQRPRELTPTTSQLAEYPTPPDRSSQVAPGIDPLMNPTELDGAVGG
FT                 VLRPLSSTAVNSPHRDERAAASRSSEALRREAVEELDNRRRSAPGSLGNPF
FT                 LEGFEDPPRSSGLGNFKQAPDPTLLSNAADCSVRAPVFQTDFLVRRSLGQI
FT                 RSSQQSQHSVEYPPLARQSSGQSDPPMPQARPPQ"
FT   CDS           1452..2756
FT                 /product="Gypsy-233_AA-I_4p"
FT                 /translation="MDEYVHTSEIETYVKAYLERIIRRPLDQQTDVSQLAD
FT                 QIANVGLHDTEISMISRGVTGPRRTRFAEPQPPLQLSSQDQPYRSSPNPEI
FT                 DRRTRYEGFSQIPRPPIDPRPPSRPEFNPQPQGYFRNPYDSRPFSDPVVFP
FT                 NNSRRLPHQQCNIIEKWPKFSGDNNLIPVTDFLRQINILCRSYAITKEELR
FT                 MHAHLLFKDSAYIWFTTYEEKFLSWEALEFNLKMRFDNPNRDRLIKEELRN
FT                 RKQRPNELFSAFLTDIESLAQRMIHKMSEREKFDLIVENMKMSYKRRLALE
FT                 PINSIEHLAQMCYRFDALEPNLYHIGGTSKPQVHQMVAESESEDDREADED
FT                 EQVFAINRKADNFSYKSKGRNTDKSGTRTEMPTKSQSQTLCWNCNQLGHMW
FT                 RECDKKKVIFCHICGHADTTAFRCPNRHNLGERNSDDEKNE"
FT   CDS           join(3601..4896,4900..6033)
FT                 /product="Gypsy-233_AA-I_1p"
FT                 /translation="MQRLGVIEECPGPVDFLNPLLPIKKSNGKWRICLDSR
FT                 RLNQSTKKDDYPFPNMMGILQRIQRSKYFSVIDLSESYYQVPLAKDAKDKT
FT                 AFRTNKGLFRFTVMPFGLTNAPATMARLMARVIGHDLEPWVYVYLDDIIIV
FT                 SNSFEEHLRLIRIVAERLTQAGLTINLTKSKFCQTKIKYLGYVLSEQGLSM
FT                 DASKIQPVLDYPTPKCVKDIRRLLGLAGFYQKFIAKYSEIVTPISNLLKKD
FT                 RRKFSWTQEADIALEKLKSALVSGPVLANPDFGLPFIIETDSSDLAIGAVL
FT                 VQMHGEERKTIAYFSKKLSSTQRRYSATERECLAVLLSIEHFKHFVEGKPF
FT                 VVSTDAMSLTFLQSMSIESKSPRIARWALKLAKYDILLQYKKGSENIPADA
FT                 LSRAINSIDVTLEDPYISQLKDMIIKYPSLSGYPDFDIRITNGKIFKFVTN
FT                 TTVPEDHGFRWKYLVPSAERKDIIRSTHEEAHLGFLKTLAKVREQYYWPRM
FT                 ASDIKRFCHSCAVCKESKTPNTNVTPICGKPKLCSRPWEMISMDFLGPYPR
FT                 SKKGNMWLLVVCDFFSKFVVVQCMHAATSSSVCTFVENLVFNLFGAPAVCI
FT                 TDNAKVFTSDLFEQLLRRYQVTHWNLAVYHPSPNPTERVNRVIVTAIRCSL
FT                 NQQKDHREWDKSVHQIAKAIRTSVHDSTGFSPFFINFGRNMVSSGSEYELL
FT                 RESDHNPIQLSEDMKDLFAIVRKNLMKAYQRYSQPYNLRANKTHTFQKGEE
FT                 VYKKNVHLSDKGHNFVGKLANKFSRVRITEVLGTNSYTLETLDGKRIPGTY
FT                 HGSFLKRV"
XX
SQ   Sequence 7189 BP; 2196 A; 1503 C; 1493 G; 1992 T; 5 other;
     ttttggcgcc caacgtgggg ccgtgaaata gattgcagta gttaaatttt tctagtattt        60
     tttttctttg aattcgttaa attaaagtaa ccaatcgttg ccgtacacat tcgtagaatt       120
     tagattgatt gaattaaatt tgagatatct tggtcaaata ggattagttc ttaagatttt       180
     cgtagttgta agatctgaat tggtattgaa ttggttatat gaattgaagt ttcctagtgg       240
     attggtaatt tctttataat ataataggtg tagattatta aattgaatta ttcgttgaag       300
     ttcaaagtaa atcacgttta cgaatagaat tttaggacat ttttttcaaa ttttcaatta       360
     aatttaatag cacaatggat ggctacagaa ttaatgctaa tgaactctta gaagaggagt       420
     tagattatga gttgagtatc agaggtcatt cgactgatga tcttctcaca gcgaaacgtc       480
     gaacagcacg aaaacttctt cgggtccttg aagatcctaa tcgtgtctgg acgtcttctt       540
     atgatttgca gcaagagttg gtggaaacgc cgatcaagtt gcaggaaatt gaaaacctgt       600
     tgcgtgaagg acgccatgac ggatgtttgt cccgtcttgt gcattatcac aagcggattc       660
     ggcgatatgt gccgcagtcc acgaagcaaa aagacgatca gataaggttg atgtttgtca       720
     ttggaagtgt tgcggagaaa tatttcgacg tagacttttg cgaggctacg ttcaaggtgt       780
     cgacaagtaa agtggttcct gctcaggcgc aacgaccgag ggaattgaca ccaacgacga       840
     gtcagttggc tgaatatccg acgccaccgg atcggtcgag ccaggtagct cccggaattg       900
     atccgctaat gaacccaacg gaattagatg gagctgttgg aggagtcttg cgtccattat       960
     cgtcaacagc ggttaactcg ccgcatcgag atgaaagagc tgctgcatcc cgcagttcmg      1020
     aagcacttag acgtgaagca gttgaagagt tggataatcg acggcgttct gcacctggat      1080
     cactgggaaa cccmttccta gaaggtttcg aagatccgcc acgatccagc ggcttgggaa      1140
     atttcaagca agcacccgat ccgacactgt tgagtaatgc tgcagattgt tctgttcgtg      1200
     ctccagtgtt ccaaacggat ttcttggtac gaagatcact tggccagatt cgttcaagtc      1260
     aacagtccca gcattcggtc gagtatccgc cattagctcg acagagctca ggtcaatccg      1320
     atcctccaat gccacaggca cgtccaccgc agcmtaattc gttcttgaat cctaatkttg      1380
     gtccagaacc acgtccttct cgtccagctt cctcgtcgac cccgcgaaac cctgataata      1440
     gtggtagaaa tatggatgag tatgtgcata cgtcggagat agaaacatat gtcaaagcat      1500
     acctggagag aataatccgt cgccctttag atcaacaaac ggatgtgagt cagcttgcag      1560
     atcaaattgc aaatgttggt ttgcatgata ctgaaatttc gatgatttca cgtggtgtta      1620
     ctggcccgcg tcgaactcga tttgcagaac ctcagcctcc gttacaattg tcatctcaag      1680
     accaaccgta tcgtagctct ccaaaccctg aaatagatag acgaactcgt tatgaaggct      1740
     tttcacaaat tccacgtcca ccgattgatc cgagacctcc atctaggcca gaattcaacc      1800
     ctcaacccca aggttatttc cgtaatccgt atgattccag accattctca gaccccgttg      1860
     tcttccccaa taattcgagg cgattgccac accagcaatg caacataatt gaaaaatggc      1920
     ctaaattcag tggagataat aatctcatcc ctgtaacgga tttcttgcgc cagattaaca      1980
     tattatgcag atcctatgct attaccaaag aagagcttag gatgcatgct catttgctat      2040
     ttaaagacag tgcatatatt tggttcacga cctacgagga aaaattcctg tcttgggaag      2100
     cgttagagtt caacttgaag atgcgattcg ataatccgaa ccgtgatcgc ctaatcaagg      2160
     aagaactaag aaaccgtaag caaaggccga atgaattgtt cagcgctttc ctaacggata      2220
     ttgaaagttt ggctcagcga atgattcata aaatgtccga aagagaaaag tttgacctca      2280
     tcgtcgagaa catgaaaatg agttataaac gacgcttggc tttagagccg attaactcaa      2340
     ttgaacatct tgcacagatg tgttacagat tcgacgcctt agagccaaac ttgtatcata      2400
     ttggcgggac gtccaaaccc caagtccacc aaatggtcgc agaaagcgaa tccgaagacg      2460
     atagagaagc cgatgaagac gaacaggtgt tcgctattaa tcgaaaggct gacaatttct      2520
     cttataagtc taaaggaaga aacacagaca aatctggaac cagaactgaa atgccgacca      2580
     aatctcaatc ccaaacttta tgttggaatt gtaatcaact gggacacatg tggcgtgaat      2640
     gcgataagaa gaaagtgatc ttctgtcaca tttgtggcca cgcagacacg actgctttcc      2700
     ggtgcccaaa caggcataat ttgggtgaaa ggaatagcga cgatgaaaaa aacgagtaaa      2760
     tgaggagctt tcagggaatc aagctacctc taatactagc tcatctccga ttcccaaacc      2820
     caattttgac cacttcgacc ggatttgcac gatcaatact tccctacgaa aatgtcccca      2880
     tttgaaggtt cgaatcctag aggaacaaat agaagcacta gctgataccg gtgctagttt      2940
     gtctattatt agttcgcttg ctctaattga taaactaggt ttgaaaattc aaccctcgaa      3000
     ccttaaagtg tctacagctg atggtactcc ctatagatgc atcggatatg taaatctgcc      3060
     aatatcagtt gaatctgtaa ctcatgtcct gcccaccata gtagtccctg agttgaagaa      3120
     ggatctgata ctaggcatgg atttcatgga aaaatttggt tatcgcttga ttggacctac      3180
     taaggccgta cctcgaatca gtgaatcggt aaattcagtt gatcttctat ggatagaaga      3240
     ccactttacc gatgacgacg aagttgtgtg ttttcaatta actcctgact catctgttgt      3300
     tgaaacgmct cctgaacaac caatcgatga aagcttggaa attcccacaa tcgaaatgtc      3360
     tgaatacagt ctccaaaatc cggctgattt agagcaccga acgattctct cgcagctacg      3420
     gaacatcaag ccctattttc ggcagttcaa aaactacctg ccacgaaaga tggaacccta      3480
     ggacgtacat cccttattga acacacgatt gaacttttgc ctgggtcgaa acccaaaagg      3540
     tttccgtcat accgatggtc accttccgtt gaagaagtca tcgatgcaga agttcagcga      3600
     atgcaacgat taggcgtgat cgaagaatgt ccagggccag tagatttctt aaatcctctt      3660
     ctgccaatca agaaatcaaa tggaaaatgg cgtatatgtt tagactctcg tcgtctgaac      3720
     cagagtacta aaaaggatga ttatccattc ccaaacatga tgggcatcct ccaaagaatc      3780
     cagcgatcga agtactttag cgttatcgat ttatccgaat cgtattacca agtacctctc      3840
     gcgaaagacg ccaaggataa aaccgcattc agaacaaata aaggactgtt tcgattcacg      3900
     gttatgccat ttgggttaac gaatgcccca gcgaccatgg ccaggttaat ggcacgtgta      3960
     atagggcatg atttagaacc ttgggtatac gtctacttgg acgatattat tatcgtatcc      4020
     aactccttcg aggaacatct gcgactgata agaatcgtag cagaacggtt gacacaggct      4080
     ggtctaacca tcaatctaac aaaaagcaag ttttgtcaaa caaaaatcaa gtatcttgga      4140
     tacgtcttat cagagcaagg actgtctatg gacgcgagta aaattcagcc agtgttggat      4200
     tatcctaccc cgaagtgcgt taaggacatt cgtagactcc tcgggttggc aggattttac      4260
     caaaagttta tcgccaagta ctcggaaatc gtcaccccga ttagtaacct tcttaagaag      4320
     gaccgtcgca agttttcttg gacacaagaa gcagacatcg cgttggaaaa gcttaaatcc      4380
     gcattagttt ctggacctgt gttggctaat ccagattttg gtctaccttt tattattgaa      4440
     acagacagct cagaccttgc cataggtgct gttctagttc aaatgcatgg cgaagagaga      4500
     aaaactatag catacttctc caagaagctc tccagcactc agaggcgcta cagtgcgacc      4560
     gaacgagagt gtttagctgt cttgcttagt atcgagcatt tcaaacattt tgtagagggc      4620
     aaacctttcg ttgtctctac agacgcgatg agtctcacct tcttacaaag catgtcaata      4680
     gaatcgaagt ctccacgcat cgcaagatgg gcgttgaaac tggctaagta cgatattctc      4740
     ctacagtaca agaaaggatc ggagaacatc ccagccgacg ccttatctcg cgctataaac      4800
     tctattgatg ttacgctcga agatccctac attagtcagc taaaggatat gatcattaaa      4860
     tatccaagcc tgtcgggata cccagacttt gatatttaac gaataactaa cggcaaaata      4920
     ttcaagttcg ttacgaacac tactgtccct gaagatcatg gatttcgttg gaaatatttg      4980
     gttccctcgg cggaacgaaa ggatatcatt cgttcaacgc atgaagaggc ccatttaggt      5040
     ttcttaaaaa cgctagcaaa agtacgtgag caatattatt ggcctcgtat ggcctcagat      5100
     atcaaacggt tctgtcatag ctgtgccgtt tgcaaagagt ctaagacacc caatactaat      5160
     gtcactccta tctgtggtaa acctaaacta tgctcccgac cctgggagat gatatcaatg      5220
     gactttcttg gtccttaccc taggtccaag aagggaaata tgtggctatt agtagtctgt      5280
     gatttctttt caaagttcgt tgtagtacaa tgtatgcacg ctgcaacgtc tagctccgtg      5340
     tgtactttcg ttgaaaacct cgtcttcaat ctctttggtg cccctgctgt gtgcattacc      5400
     gacaatgcga aggtatttac ctcggatttg tttgaacagc ttctccgaag atatcaagtc      5460
     acgcattgga acttagcagt ctatcaccct agtccaaacc ccacagagag ggtaaataga      5520
     gtcattgtta ctgcgatacg atgctctctc aatcaacaaa aggaccatcg tgaatgggac      5580
     aaatctgtgc accaaatagc caaagccata cgcacctcag ttcatgacag tactggcttc      5640
     tcgccctttt tcatcaattt tggaaggaac atggtcagct caggttctga gtatgaactt      5700
     ctacgagagt ctgatcataa tcccatccag ctaagcgaag acatgaaaga cctgtttgct      5760
     atcgtcagga agaatttgat gaaagcttat cagcgatatt cacaaccgta taatcttcga      5820
     gcaaataaaa cacacacatt ccagaaagga gaagaagtat acaagaaaaa cgtacatctg      5880
     tcggacaaag gacacaactt tgtagggaaa ttggcaaaca aatttagcag agtacgaatc      5940
     acagaagttt tagggaccaa ctcatacaca ttagagacac tggacggaaa aagaatccca      6000
     ggaacgtacc atggatcgtt tctaaaacgt gtataaaaga tcaagctatg acggtgttac      6060
     tatagagcac acaaaaacaa ctagacaaat ctaatcaaaa tactctttag aggtttattc      6120
     cggcgttcga gatgtcatca atatgtttcc tcacgtcgag agtcgtaaat cgttcatgca      6180
     caggctatgt tgatgttcga gcccagctcc atcaaaccac ggcaattcgc ttccaaaata      6240
     ctcctccgag gcattattcc atcgattgag atgtcaccta cgtgtttcct catcgaacta      6300
     tccaccatcc aatccatttt acgaacctag aacaggtaaa taaacaaaaa ttagcatagg      6360
     tttagagtaa aagtaaatcg tcagtaaact taccagtatc aatttcagta tgttgtaaat      6420
     tacaccgctc ggttcacaat aatgccatac accactttag atgtagtttc aatagcccgg      6480
     atccaattaa aacagcagaa ttaaagttaa ctttccactt ttgcacatta acgtttcact      6540
     tttgccgacc actttgacag ttatttgttt tgctacatct ttactttctc tcactctctc      6600
     agtttgatgt tttctctcgg tattctgaaa aggaaagctt tggacgcaaa gtgagtctag      6660
     ggcgcgtttg ttatgagaat gagtgtttag caagtagggt ggttctaaaa ttaaagattt      6720
     ccaattttta ttggagtaat tcggtttatt attgtaggcg atttcagatc ggaatctgag      6780
     gtatagtttt ccaattatga ttggagttat tcggataaca ataaatttgg tttttcagat      6840
     aaatctgaag taaattggtt agtttaagta aaacataatc agatatttct gatgttggtg      6900
     tgaattaggt tttgtgtacg aagatggttc agtagaggaa tggaaatcaa aatggttcag      6960
     aatatccaag aggaaacttc agtccgttaa taaatgaatt cgagtatatg taattgagat      7020
     ttgggtttaa gaagtaattg tattaaaaaa tgacagtagt tgaattaaac atattttaac      7080
     taaaatataa gtatgaccaa gaagtaaatt aacgaatatt agcaatcttt tccctataaa      7140
     aatttttaaa ttttcaattt aaaaattttt ataattaagc atcggcgaa                  7189
//
ID   Gypsy-233_AA-LTR repbase;    DNA;    INV; 1691 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-233_AA_;
KW   Gypsy-233_AA-I; Gypsy-233_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1691
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1070-1070 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1691 BP; 459 A; 345 C; 393 G; 491 T; 3 other;
     tgtaacaaaa tgaatatgca ccatagtttt gggtgtaata actgatcaaa agctacaaga        60
     gcgaactctt gcgagaaaaa aatgagacta ttgaagcttt cgcaaaattc aaattgtgag       120
     tgcctccact caggaactca ttctgggtag attccctgat gcgcaaaaac gcaataactg       180
     cgaattcaag gcttcctatt accttccgta tgcaaattaa acgcatgaag taaaacaata       240
     ccgtgtgggc gtgagaagga tgcacgatcg gaattgttac aaaagagaat tgtgttcagt       300
     tcaaaataga tagccgttct attgggtaaa tgcaattatt gttcaccttt gtcgaacaag       360
     ttcagtgcga ctcgttgact agagcagacg taatagtcga agtctaaaaa gtcagttgtt       420
     agccacgttg catttacaag tgcattagcc aagttctgtg attgtaagtt cctttaaaat       480
     tgaatggcct tttatttaga agaactagtg ttatcctttt gcagttttcg tcagttggaa       540
     agcgaattwa attaaaatct acaaagtagg ttctgtgttc gaagcacgtg attgagactg       600
     tccggtagtg tagattcgga caaaagacgg taaggccaac agtagggtta aataatttaa       660
     gcgtgtgcta attcgttgga acccattgat cagaatactc gctgatcgat gcgggtattt       720
     tcctaggttt tggaaattga gagaagaacc ctagcgctcg acctgtgagc ggagctctca       780
     ccgcaagcga gaccgtcacc tcccaacccg ccacccaccg ccttttgtcg cactgtacgc       840
     cgactctccg tggtgcaaca acaacaatca ccggcgtgac atcgctacca ctgtctgcgc       900
     caaagttatc gctcaggagt cggtcggata caccgctggt attacaccgt tgcgcggtga       960
     cacgaacccc atcgtgtgtc tgggatttcg aatttgaaat agtgcggtag tgagggagtg      1020
     ctttccgtct acgtctcaag cataaccgag catagaagca atcacgatat tgggcgatat      1080
     tgcatgcgaa cacgccagcg cggtgagaat acgttttcga attgcccgcc gacggatagg      1140
     agcgtctcca ccgagccctt cgcttcgagg gattttgctg cmtggtttgt tcccgttgca      1200
     tttaccgaaa ggtcagatct agattgtaag gctaatttta agggaaaact agatattaag      1260
     gaatcattag agctaggttt tgagtgacgt caccttctaa aagcttgctg acaggcctct      1320
     gtaaatattg agattttaaa tacacgaaat ttaaagcaag ctgtgattac gtctaggaag      1380
     gcagacgaat caaacggttc ttgttcgaat ttaattattt cakatttaat tggctatcgt      1440
     ttcgatcttg ttttcttctt tgattagtaa gtttgttgtt gggtttcata gtagattttg      1500
     tccttgaatt cttggttttc aaatttttgg ttgcattttg ggttagttgg aatgtattcg      1560
     agtgtttgag cagtctatta actcgcccta tttgaagagc ctctgccggg cccccaaaca      1620
     gcctcagcag tctctcccct cggagagtgg cgcttaagct gctaaggtca ggaactcgtt      1680
     cattcgttac a                                                           1691
//
ID   Gypsy-234_AA-I repbase;    DNA;    INV; 6883 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-234_AA_;
KW   Gypsy-234_AA-LTR; Gypsy-234_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6883
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [1] (Consensus)
XX
CC   Positions [4096-4695] - Reverse transcriptase
CC   Positions [5818-6282] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2557..4380
FT                 /product="Gypsy-234_AA-I_1p"
FT                 /translation="MDSLRPVRPFDSKVDQSQLASEWRRWKRSLEYYLEAS
FT                 GIVGQRQKRNQLLFLGGPDLQDIFDNLPGVNDVPHVAIDPPFYDIAVEKLD
FT                 AHFQPTRRRTYERHVFRQISQKVGERFNDFVMRLRTQANRCEFDQDGGSVL
FT                 DSMIIDQIAEKCLSPSLRKKILEKDRSLNEVVAIGKTIEDVEMQCKELVCG
FT                 APTEVVNNVRMNQNLMFKKIPAFNRPQNWSMLPSKERQFQYSRAQQRSFMP
FT                 ELRTNSSIPSNARPYQPPMGQRSSFIETRICFSCGRRGHLKGSVECPAREQ
FT                 QCAKCKSKGHFAKWCTKRVYEGPKKEPTPKRIKAVFEEENTRGEFQAREDK
FT                 EAEICYVMGQNVFRFLIGGIGVKMAIDSGAAANLIDLATWNELRESGATLT
FT                 FQKQPDRSFKAYGTEEPLKLIGMFGATIEAHENKTEAVFYVAENGKQNLLG
FT                 DETAKILKVLKIGYNVGAVQESSCFPKMKGILVEIPIDPTVKPVQLPYRRV
FT                 PFAIEEKLAKKLEYLIDQDIIERVEEPSPWVSPIVPILKDSGEIRLCVDMR
FT                 RANNAVLRETHPLPIVEELFAGINGAVRFSKIDVKEAYHQVEISERSRPIT
FT                 TFITKQGLFR"
FT   CDS           4495..6780
FT                 /product="Gypsy-234_AA-I_2p"
FT                 /translation="MFGISCAPELFQKVMESVVAGLEGVVVYLDDVLVSGR
FT                 TQAEHDKRLHLLLNRMKEYGILLNEDKCVINVSQIEFLGHELTKNGIRPTE
FT                 SRISAIKSFREPRNVSELRSFLGLITYVGRFIPHLADKTEPLRKLLRDGEK
FT                 FIWMDLHKQAFDSIKSAVCEADFLGYFDTKDQCILVADASPTGLGAMLLQK
FT                 DEQGNSRIISFASKALTPIEQRYFQTEREALALVWAVDKFKLYLLGKRFKL
FT                 ITDCKPLHFLFKERAKPCARIERWVMRLQSYNFEVVYEPGSCNLADALSRL
FT                 SVSEATDFDVTGEACIYQLVLQDTPKAMSLEEVERESSRDSTFIAVLESLS
FT                 NGVWDDKSKGYKPFASELCVSGKFLLRGDRLVIPEQLRQRVMEIAHESHPG
FT                 MVVMKRRLRQKVWWPMLDKQVEHFVKKCKACAMVSALDPPEPMNRTEMPDR
FT                 PWKHLAADFVGPLPSGHNLLVIIDYFSRFTEVIIMKQITATLTVKALHETF
FT                 CRFGMPTSLKTDNGPQFISNELEAFCEEFGIKHIRTTPYWPQANGEVERIN
FT                 RSIGKRLKISQETYGSDWKWDIRMFVLMHNSTPHSTTGVAPSTLMFGRVLK
FT                 DKLPGLMTKGCKILEEVHDRDADRKMREADYANQRRMARTSEIKVGDTVIV
FT                 KRVHKENKLSTTFSPEEHVVVDRKGSDVTVKSKESGKELHRNTKHLKKLVT
FT                 ENKDEIPEQNGCPDEEGNSTPKPGNVSIENSESREEISSRPRRETKQPAYL
FT                 EDYQIHNLNSF"
XX
SQ   Sequence 6883 BP; 2327 A; 1124 C; 1551 G; 1870 T; 11 other;
     tttggcgata cgaggaaaat ttcggccgac gcgacggagt gtatttttgt gaaaagcaaa        60
     tttcaagttt ttttcagtgg taagattgaa aggaattggt agtgagatat tttagcacat       120
     gtcgtttttt cgattaattg aaatggggaa aattgtgaga agtaagaatt tgataagaaa       180
     tcatagaaac gaggagaatt ttatgtggtg tcgaatgaat tgtcctgtgt gcaacaaaaa       240
     gaaattagtt ctatggaggt ttcgtataat tattgccacg aagtctcaaa atcaagatgg       300
     aattgtgatt gagtagcttt cgaaccgtga atttaaaaaa aaaaaaaaaa tcatgtgamc       360
     atcggccaat gcgataaaat aaaatttaaa aaaaaaagtg tggaacggtg atgcaaatgc       420
     aagaaaaata caaaatggcc gacttgaatc agaaagcggt ttggctatat gtgtaaagga       480
     ttgtgatacg gggacggata tgaaagtcat acaatgaaga agcatcatag tggttgtgtg       540
     tgtgtggaga catatcgcgt gagcaaatct agcaaaccgg acaatacata catggaaaat       600
     aagtgcctac tgtacatgtg gttgtgcaat cagaaaaaaa aactgtggtt tatctttgga       660
     caggagcatg tgacgattga tgatagattt gaaccaagct tggttcattt ggtagtggtg       720
     ccgaatgaag cagtggagga tcaaaataaa atgtgtttct gttcctatga ccgttcacct       780
     gtgatggtga tttcttaatt atgaaggatc cgtagctgat ktgagccgtc atagtttgag       840
     acggaaaacc atttttattc gtgaacgtag tctactgtaa gtacgaatta ttagttttta       900
     ctatatcwga aaaaatcgca tacgatgagc agctggggtt cgaccaatac atcgaaaggc       960
     taatgcaaac attaaatatt caatgctgta ctgcccatat acgcataatt gtcccatgtg      1020
     aataggaaac ccagcaaaca tgggactgac atgcatttat gggtagtgta ttgctcaact      1080
     ttttttttgt aaggacgatt tatatttcaa aagtgaataa tagttgaaaa ttcttcgttt      1140
     taaattgatg aatatgaatt acatcgattc cttgtttctc atttcattca atatatagaa      1200
     ttacattgaa gagaacaaac agaatttcct taatcatgac ccatgctgtc catcctattt      1260
     ttttttaaat ttttgatgtt atgtgaaatg agttgagtac tggattcaca taggaaaaaa      1320
     caacaaaata aacactatgc atatctaatg tgaaatgagt cgagtactgg attcacataa      1380
     aaaaaaaaag aagaaagaat tttagattgc ggttaggtaa tgtgaaatga gttgagcact      1440
     gaattcacat tatgtwaaac gaaataaata tcgtacgtgt tatgtgaaat gagtcgagta      1500
     ctggattcac ataaaaaaaa agaagtttat tttaacaacg tgaaatgagt cgagcactgg      1560
     attcacaatg aaaaaaataa ccactstata tgtatatgta aaaaaaaaag tattgataam      1620
     attattgtga ccttttattt tttctatatt ggtgcatgtt gttcattggt aattttaaag      1680
     ttttaaaatg tgaaatgagt cgagtactgg attcacatta caaaaaaaag aagaaagaat      1740
     tttakattgc ggttaggtaa tgtgaaatga gttgagcact gaattcacat tatgtaaaac      1800
     gaaataaaca ttgaacgtgt tatgtgaaat gagtcgagta ctggattcac ataaaaaaaa      1860
     atgaagaaga ttcttttaac aacgtgaaat gagtcgagca ctggattcac aacttacaaa      1920
     aataaatacg agcattatat gatttggtac aaattggaac tagaagtacg ttggaaatta      1980
     aacggaaatc gtagaacata cattacgaat gtgaaatgaa tcgagaactt gatttacgtt      2040
     ttgggatcag agattaaata gtgcttattt agaatattca attggctcga acaattgtaa      2100
     attaaagcaa gaatcgtgta catgtttcga ctaacaaata actatcggaa aaaaaaatgc      2160
     gaaggatttt tgatcggttg aagtgaaatg agtcgagtta ctggattcac aataagtaaa      2220
     taaatcatgc aaaaataaaa aaataaaaaa ataaaaagac taaatagttt taaactgtga      2280
     aagaagacta gccattatta ttagatattc atccaaggtg aaactgaagt taaaatgaag      2340
     taagtagaga attaaaaaaa aaaaawaata ataataataa ttaaatacag tggtatggaa      2400
     actaacaata ataatttttt tatcaatttt tatattatca tagctcttgt tagcaatttt      2460
     gttaataaat acaagaaaat cgaaaaaacg acatggaaaa caaaacatgt tttggtttgg      2520
     agttgggaat gmattttaat tttattttct taggaaatgg attcattgag accagtcaga      2580
     ccttttgatt caaaggtgga tcagtcccag ttggcgtcag agtggagacg ttggaagcgt      2640
     agtctagaat actatttgga agcgagcggt attgtgggtc aacgacaaaa gcgaaatcag      2700
     ttgctattct tgggcgggcc tgatttgcag gatatctttg ataacctccc aggagttaat      2760
     gatgttcctc acgtagctat tgatccgcct ttttatgaca ttgctgtcga gaaattggat      2820
     gcccattttc aacccactcg tcgacgcacg tatgaacgcc acgtttttcg tcaaatttct      2880
     caaaaagttg gtgagcgatt caatgatttc gtaatgagac tacgcactca ggccaacagg      2940
     tgtgaatttg atcaagatgg aggttccgtg ctggatagta tgattatcga ccagattgca      3000
     gagaaatgcc tttcgccgtc tttgaggaag aagattctgg aaaaagacag gtcgttgaat      3060
     gaagtggtcg caattggaaa aacaatcgaa gatgtagaaa tgcagtgtaa ggagttagtt      3120
     tgcggagctc ctactgaagt tgtgaacaac gtgcgtatga atcagaatct aatgttcaaa      3180
     aagattcccg cgtttaatcg cccccaaaat tggtcaatgt tgccttcgaa ggaacgacaa      3240
     tttcagtact caagggcaca acagagatct ttcatgccag aactacggac caattcatca      3300
     attccatcaa atgcaaggcc gtatcaacca ccgatgggtc aacgttcctc attcatcgaa      3360
     accaggatct gcttcagctg cggacgacgt gggcatttga agggaagtgt ggagtgcccg      3420
     gcacgtgaac agcaatgtgc gaagtgtaaa tctaaaggac atttcgcaaa gtggtgcacc      3480
     aaaagggttt acgagggtcc taaaaaggaa ccgactccca agcgaatcaa ggcagttttc      3540
     gaggaagaaa atactcgagg agagtttcaa gcaagggaag ataaggaagc cgaaatctgt      3600
     tacgttatgg gtcagaatgt tttccgattc ctcatcgggg gcattggagt caaaatggct      3660
     atagattccg gagctgcggc aaacctcatt gaccttgcca catggaacga attacgmgag      3720
     tcaggagcaa ccttaacgtt tcagaagcaa cctgatcgtt ctttcaaagc ttacggaaca      3780
     gaggagccac ttaaactgat cggtatgttt ggcgcaacca ttgaggcaca tgagaataaa      3840
     acggaagcag ttttctatgt agctgagaac gggaaacaaa acttgctcgg tgacgaaaca      3900
     gcaaagatac ttaaggttct gaagattggt tacaacgtgg gggctgtgca agagagttct      3960
     tgttttccga aaatgaaagg aattttggta gaaattccaa tcgaccccac cgtcaaaccg      4020
     gtacaactac catatagacg agtccctttt gcaattgagg aaaaactcgc aaagaagctg      4080
     gaatatctaa tcgatcagga cattattgag cgtgttgaag aaccatctcc ttgggtatcc      4140
     cctatcgtac caattctcaa agattcagga gaaattcgct tgtgcgtgga tatgcgacgt      4200
     gccaataatg ctgtcttgcg agaaactcac ccacttccga tagtggagga gctattcgcc      4260
     ggtataaatg gagcggtaag attctcaaag atagatgtga aagaagcata tcaccaagtc      4320
     gaaatatcag agaggtcaag gccaattaca acgtttatca cgaagcaagg actgttcagg      4380
     taatggttga agatgatttt gatttttgtt gttgttgggt aaatgaaata aatgaaatgt      4440
     tgaattccgg gaacaatttc tttttcttaa tcttgacaga tacaaacggg ctagatgttt      4500
     gggataagct gcgctcctga actcttccag aaagttatgg agtctgttgt agctggatta      4560
     gaaggggttg tagtttatct ggacgacgta ctagtatcgg gcagaaccca agcagaacat      4620
     gataaaaggt tgcatttgct tcttaaccga atgaaagaat atggaattct tttgaacgaa      4680
     gacaaatgtg tcataaacgt gagccaaatt gagtttcttg gccatgaatt gacaaaaaac      4740
     ggaataagac ccactgagag cagaatttcg gcgatcaaga gtttccgtga accccgaaat      4800
     gtatcggaat tgcgcagttt cttgggcctc attacatatg ttggacgttt tattccgcat      4860
     cttgctgaca aaacagaacc actacgaaag ctacttcgag atggtgagaa atttatttgg      4920
     atggatttgc acaaacaagc attcgattct atcaaatcag ctgtatgtga agcggatttt      4980
     ttgggttatt ttgacacaaa agatcaatgc atactagtag cagatgcaag tccgactggt      5040
     ttgggggcaa tgctattgca gaaggacgaa caagggaaca gcagaattat atcattcgct      5100
     agcaaagcat tgacaccaat agagcagcgt tatttccaaa cagaacgcga agccttggct      5160
     ttagtctggg cggtagataa gtttaagttg taccttttgg gaaaacgctt caaacttatt      5220
     acagactgta agccattgca tttccttttc aaggaacgtg ccaagccttg cgcccgaatc      5280
     gaaagatggg ttatgcgcct acaatcttac aatttcgaag tagtctatga accaggatct      5340
     tgcaatttgg cagatgcgtt atcaagactt tcggtttccg aagctacaga ttttgatgtg      5400
     acgggagagg cctgcatata tcagcttgtc cttcaggata caccgaaagc aatgtcctta      5460
     gaggaagttg aaagggaatc ttccagagat tcgactttta ttgctgttct tgagagtttg      5520
     agtaatggcg tatgggacga taaatcaaaa ggatacaaac cttttgcatc agagctgtgt      5580
     gtatcgggaa aatttttgct tcgaggtgac cgattggtca ttccggaaca acttcgacaa      5640
     agagtaatgg agatagcgca cgagtcacat ccaggaatgg ttgttatgaa acgcagactt      5700
     cgccaaaaag tttggtggcc aatgttggac aagcaagttg aacatttcgt aaaaaaatgc      5760
     aaagcctgtg caatggtatc cgcacttgat ccaccggaac ctatgaatag aacagaaatg      5820
     ccagaccgcc catggaaaca cttggctgcc gattttgttg gaccgttgcc atctggacat      5880
     aacttgcttg tcataataga ctacttcagt cgattcacgg aggtgatcat tatgaagcag      5940
     ataactgcga cacttaccgt caaagcatta catgaaacgt tctgtcgttt tggtatgcca      6000
     acatcgctta agacagataa tggaccgcaa tttatmagta acgaactgga agctttctgt      6060
     gaggaatttg gaatcaaaca cataagaacc acaccatatt ggccgcaagc taatggcgag      6120
     gtcgaaagaa tcaatcgttc aattggaaag cgtctaaaaa taagccaaga aacatatggg      6180
     tctgattgga aatgggatat ccgtatgttc gttctaatgc acaactcgac tccacattcg      6240
     actacgggag tagcaccgtc gaccttaatg tttggtcgtg ttttgaagga caagttaccg      6300
     ggattgatga ctaaagggtg caaaatactg gaggaagtac atgatcgcga tgctgatagg      6360
     aaaatgcggg aggcagatta tgcaaatcaa cggcgaatgg cgagaactag tgagataaag      6420
     gtcggtgata ccgttattgt gaaacgagtt cataaagaga ataagctgtc aacaaccttc      6480
     agcccagagg aacacgtagt tgttgataga aagggatcag atgtgacagt caaatcgaaa      6540
     gagtctggca aggaattaca ccgcaacaca aaacatctca agaaactggt aacagagaat      6600
     aaggatgaaa ttccagagca aaatggatgt ccagatgaag agggcaacag cactccaaag      6660
     cctggaaacg tatccatcga gaattcggag agtcgtgaag aaatcagttc cagaccacgt      6720
     cgcgagacga aacaaccggc gtacttggag gattatcaaa ttcataatct caacagtttt      6780
     taaagaagaa gaggaatgta gtgtcgcact aatccatgaa ataactcgaa tgtatataaa      6840
     ccgtgaaacg attatacctt gcattgtcaa atacctttga ttg                        6883
//
ID   Gypsy-234_AA-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-234_AA_;
KW   Gypsy-234_AA-I; Gypsy-234_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-127
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 127 BP; 35 A; 26 C; 29 G; 36 T; 1 other;
     tgtagaaacg ttgcatcttg cgacccmcga gagttgaagt gtagaattgg agaataaaga        60
     tcacttgtat ttcgacgcgc atccgtgaca cttgtattct gtgtcttatc cgagatccga       120
     tacaaca                                                                 127
//
ID   Gypsy-235_AA-I repbase;    DNA;    INV; 4486 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-235_AA_;
KW   Gypsy-235_AA-LTR; Gypsy-235_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4486
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1071-1071 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [1846-2352] - Reverse transcriptase
CC   Positions [3546-3911] - Integrase core
CC   'GTTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..3588
FT                 /product="Gypsy-235_AA-I_1p"
FT                 /translation="MPKIKRRRNATDEREEEEEEEEAVIKQEHQGQQNVLP
FT                 VCSSKMSLNPIPEATEVRMSRPLHPEEVRALISEYDGSYDAAIWIRKVEHY
FT                 QKLYGWTDNATLLYATTRLIGPAKLWYSSVEERIFGFQGFKVMLLTTFPSY
FT                 HDEADIHRELMTVMKAPQETYDNYVFRVQNVASKGHVSETSVVKYIISGLS
FT                 RDKLYHQIAANEYTTVFGLLKRIKWCESNFLMKKADAVGSRQPVRQSGSVV
FT                 KGGASGPPLGASGFICFNCNETGHKSVNCPRPQRRPRCSSCLKVGHSADQC
FT                 FKVANDGGTGTTGTSKTTVALITAGEGENTTQDAVPNEVIDTDEDGMTTCD
FT                 AIIGRRLKQLKLLVDSGSAVSLIKRSELSNLIRFNSKIGNRTVDITGINQS
FT                 KVKIEGCLKTKVIVKGKLVLDVSFWVVGNDTMGVSAILGRDFLKQNNITVI
FT                 RFEKPEISAFSTKFDLNLINDAFGDSLLVATDCGNLDLMVGDNDETRQYAD
FT                 QINADFETFYRQKQPDAEKTVKYMATIRLKEDKYFNVSPQRMGKFEKDAVD
FT                 QIVEDWLHDGTIRESESPYSSRVVLVKKNNGRYRLCINFKTLNKLVERDRF
FT                 PLPIIEDQIAKLEGMKYFSTMDMKNGFFHVELSEDSKKYTSFVTENGQYEF
FT                 NKLPFGYTNAPSVFCRYVAKVLNEFVKSGELVVFMDDFMLFTKTIDEHLDL
FT                 LRRVFSALKDNGIELNLEKCRFLVTQVEFVGYDIRSNQISPCERHVKAVRD
FT                 LPIPQNIKCLQRFMGLLSYFRKFIKGFSSIASPLYDLLKKDSVYKFGPEHL
FT                 EAFETLKSLLVSRPVLSIYSPVAETQLHTDASAQGFGGILMQRQSYDGKFH
FT                 PVMFFSRKTNPAESRLHSFELETLAVVYSLQRFRHYLIGIPFEIVTDCKAL
FT                 KHTLEKRDTNSKIARWADFIAEFDKQIVHRSGDRMQHVDALSRMYVHAVEV
FT                 DEYGSRSLFEDSLYVAQIKDERLCRLKSSVEEGKISGYEIRDNLLYKAENG
FT                 RLLLYIPEEMEESVIYRFHDSLGHFGKDKVLHLIKRSFWFPKMAEKVLAHT
FT                 KKCISCIMFNPKSRKADGELQSIDKGNRPFWMVHADHLGPLETTKGKNKYV
FT                 LAVVDGFSKFIKLYPTKTYRRTRMKL"
XX
SQ   Sequence 4486 BP; 1356 A; 833 C; 1095 G; 1201 T; 1 other;
     atttttcaga agtgggatgg cggagaatat ttccgcaaaa acgtaattcg agcgtaaata        60
     agtgtaccgc gacggtagtg caaatgttat tacaaagcta gctacggaca taacgaaatt       120
     tcaacgtaaa acgaaatcat cggaacgttg ttttgccggt gaaaacgaaa cgccattttg       180
     gaacgaatgc cgaaaatcaa acgtcggcga aacgcgacgg acgaacgaga agaagaagaa       240
     gaagaggagg aagcggtaat taagcaggag caccaaggac aacagaacgt cttgccggtg       300
     tgcagcagta aaatgtcgct gaacccaata cctgaagcca cggaagtccg aatgtcacga       360
     ccactgcatc cggaagaagt gagagcttta atcagtgagt atgatggatc gtacgatgca       420
     gccatttgga tacggaaagt ggaacattat cagaaactgt acggatggac ggataatgcc       480
     actcttctat acgcaacgac gaggttgatt ggtccagcga agttgtggta cagctcagta       540
     gaagagagaa tctttgggtt ccaaggattc aaagtgatgt tattgacaac ctttccgagt       600
     taccacgacg aagcggatat acatcgggag ctaatgacgg twatgaaagc tccacaggaa       660
     acgtacgaca actacgtatt tcgagttcaa aacgtcgcca gcaaaggaca tgtttcggaa       720
     acctcggtgg tcaaatatat catcagcggc ctttcacgtg acaagctgta tcatcaaatc       780
     gctgcaaacg agtacaccac ggttttcggt ttgttgaaaa ggatcaagtg gtgcgaatcc       840
     aattttttga tgaaaaaagc agacgcagta ggatcccgtc aaccagtacg tcaatccgga       900
     tcggttgtta aaggcggagc aagtggacct cccttaggag cgtccggctt catatgtttc       960
     aactgcaacg aaactgggca caagtctgtc aattgcccaa gaccccaacg acgtccgcgc      1020
     tgcagttcgt gtttgaaggt gggacacagc gcagaccaat gcttcaaggt ggcgaacgac      1080
     ggtggaacgg gtacgacagg tacgtccaag acaacggttg ctttgattac agcgggtgaa      1140
     ggagagaata ccacgcagga tgcagtaccc aatgaggtga tcgacactga cgaggatggg      1200
     atgacaacat gcgatgcaat tatcggcaga cgattgaaac agctcaagtt gctggtggac      1260
     tctggcagcg cggtgagtct aataaaacga tctgaacttt ccaatttgat taggtttaat      1320
     agtaagatag ggaaccgtac cgtagatata actggtatca atcagtctaa agtgaaaatt      1380
     gaaggttgct tgaaaacaaa agtgatcgtt aagggtaaac tggtactaga tgtctcgttt      1440
     tgggttgtgg gtaacgatac tatgggagtg agcgctattt tgggtcgtga tttcctcaaa      1500
     cagaacaaca taacggtgat tcgtttcgag aaacctgaaa tatctgcatt tagtactaag      1560
     ttcgatctta acctgataaa cgatgctttc ggtgatagtt tgctcgtagc aacagactgt      1620
     ggtaatcttg atttgatggt gggtgataac gatgaaacaa ggcaatacgc agatcaaata      1680
     aatgctgatt ttgaaacgtt ttatcgccaa aagcagccgg acgccgagaa gactgttaag      1740
     tatatggcaa cgatacgttt gaaagaggat aagtatttca atgtttcccc tcaacgaatg      1800
     ggaaaatttg agaaagatgc tgttgatcaa atagtcgagg attggttgca tgatggtacg      1860
     atacgcgaga gtgaatcgcc gtactcgagt agggtggtcc ttgttaagaa aaataatgga      1920
     cggtatcgat tgtgcataaa tttcaagaca ctgaacaaat tggttgaacg agatcgattt      1980
     ccactcccga taattgaaga ccaaattgcc aaactagaag gtatgaagta tttctcaaca      2040
     atggacatga agaacggatt ttttcacgtt gaattatctg aagattctaa gaaatacaca      2100
     tcatttgtta cagaaaatgg gcaatatgag tttaacaaac tcccatttgg atatactaat      2160
     gcgccttccg ttttttgtcg ctatgtagca aaagttttga atgagttcgt caagtccggt      2220
     gagttagttg tgttcatgga tgatttcatg ctattcacga aaaccataga tgagcatctc      2280
     gatctcttac gtcgtgtttt ctctgccttg aaagataacg gaatcgaatt aaatctggag      2340
     aaatgtcgat ttttagttac acaagttgaa tttgtggggt atgatatccg atcaaatcag      2400
     atcagtccat gtgaacgcca tgtaaaagct gtccgagatt taccgattcc gcaaaatatc      2460
     aaatgtctgc aaagattcat gggactgtta agctattttc ggaagtttat taaggggttt      2520
     tccagtattg cgagtcctct gtacgatctc cttaaaaagg attcggttta taagttcggt      2580
     cctgaacatc tagaagcgtt tgaaactttg aaatccttgc tagtgtcgcg tcccgtacta      2640
     agcatttatt cgccagtagc tgaaacgcag ttgcacactg acgcatcggc gcaaggattt      2700
     ggtggcattc ttatgcaacg gcaatcgtat gacggcaagt ttcatcctgt gatgttcttc      2760
     agtcgcaaaa caaatccggc cgagagtcga ctgcactcgt ttgagctgga aaccttggct      2820
     gtcgtgtatt cgcttcaacg tttcagacat tatctcatag gaataccgtt cgaaattgta      2880
     acggattgta aagcactcaa gcatacgcta gagaaacggg acaccaacag caaaattgct      2940
     agatgggcgg attttatcgc tgagttcgat aaacagattg ttcaccgttc gggagatcga      3000
     atgcagcatg ttgatgcgct ctcaaggatg tatgttcatg cggtggaggt agatgaatat      3060
     ggaagtcgaa gtttgtttga ggattcattg tacgttgcac agattaaaga tgaaaggctt      3120
     tgtcgtctta aatcgtctgt cgaggaagga aaaatttctg gttatgagat tcgtgataac      3180
     ttgttgtaca aagcagaaaa cggtcgcctt cttctgtata tccctgaaga aatggaggag      3240
     tcggttatat ataggttcca tgattctctc ggtcactttg gtaaagataa ggttctacat      3300
     ttgataaaac gttctttctg gtttcctaaa atggccgaaa aggttcttgc acacacgaaa      3360
     aagtgtattt cctgtatcat gttcaatccg aagtctagga aagcagatgg agaacttcag      3420
     agtatcgata aaggtaatcg ccccttttgg atggttcatg cagatcattt agggccgtta      3480
     gaaactacga aggggaaaaa caaatacgtt ttggcggtgg tggacggttt ttccaaattt      3540
     attaagcttt atcccaccaa gacttatcga cgaacacgca tgaagttatg aagcatttga      3600
     agtcttattt catcaactac agtactccta ggatacttgt cacagatcgt ggagcatgct      3660
     ttacttctca ggcgtttaaa agttttgttg agacgcatgg agttgttcat aatctcgcag      3720
     caacggcttg tccacaagcc aatgggcaag tggaaagata taatcgcaca ttagtaccct      3780
     tattggcaaa actagttgag tcctccggtt cttcttggga tagtgccttg attgacgccg      3840
     aatatctttt gaataataca accaaccgtg gatctggagc aataccgtcg aaactgttgt      3900
     ttggtgttct gcagctacgc aaaatatcca atgatgccgt ccagtatttt caggatttgc      3960
     tagaatctcc agattgtgtt gacttgaagt cttctcggaa tgaagcggct attcatatgc      4020
     gtaaaatcca agattataac aagcgaaacc atgatagtaa atgcttgaaa accgtttatt      4080
     tggaggggga cctagtcgtg atccgtagcg ttccggttgt tggtggggat aaaaagctga      4140
     ggcctcgatt caaaggcccc tatcaagtca agaaagtgtt ggatagaaac cgttatgttg      4200
     ttaccgatat tgagggctat caggtatcag ggaaacgttt cgagggaata ttcgacccac      4260
     aaaatatgcg gttgtacaag cgtgatccca cgagaccttc agataacgga tctgaaagtg      4320
     aattgagtga taatgagcag taatagaatt ttcgatttat tacaggaagg taacagaacc      4380
     gattaatgaa ctattgtcaa ttgccgttca gatcgcaacg atacataaaa catgtaatag      4440
     atataggaaa ttagggctgg cgagaactct tgtaggatgg ccgagc                     4486
//
ID   Gypsy-235_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-235_AA_;
KW   Gypsy-235_AA-I; Gypsy-235_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1072-1072 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 201 BP; 57 A; 48 C; 37 G; 59 T; 0 other;
     tgaaggagac gaattttgaa atggtctaca ccctcaattt cggctgaact cttacccctc        60
     gatttcaaca aaccgatctt atcccttcag tttaggttca gtgatttggg agagttttgt       120
     agagtatata cgttcacgtt cccgccagca cacttcctgt tcagctagcg taggaaaaac       180
     atcccgaaat ataatactac a                                                 201
//
ID   Gypsy-236_AA-I repbase;    DNA;    INV; 6281 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-236_AA_;
KW   Gypsy-236_AA-LTR; Gypsy-236_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6281
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1073-1073 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3525-4163] - Reverse transcriptase
CC   Positions [5241-5714] - Integrase core
CC   'ATTGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1961..3502
FT                 /product="Gypsy-236_AA-I_1p"
FT                 /translation="METFRPVKQFDAKVDQSQLATEWRKWKRSLEYYLAAS
FT                 GIAGQREKRNQLLHLGGPDLQDIFDNLPGVHDVPHVTPDPPFYDVAVQQLD
FT                 SHFQPCRRRTYERHVFRQISQLTGERFGDFVMRLRVQASRCDFDQEGNSVM
FT                 ESMIIDQIAEKCISSALRKKILEKDRPLDEVVAIGKTIEDVEQQCKEMVQR
FT                 EHDDKPLTVVNKVNQRGLPPAKTNFQPANNRSFQYQPRSQQGFRRPNFRDQ
FT                 SRFRFEAKRNWTSSGNPPTSGAEGGHQSINDNRICFGCGRRGHLKGSASCI
FT                 ARDAQCLKCRTVGHFAKWCTKRTNEDSLPNPSSAKRIKAVVDSDDNSKMYG
FT                 NSDLPEKEQDICFIMGGNVFRFKIGGVETIMTIDSGAAANIIDLKTWETLK
FT                 KQGAKVNFKPHVDRSFKAYGSSTPISMAGMFIAEIETGNNKVEATFYVAKN
FT                 GLQSLLGDETAKKLKVLKIGYNVGSIQDVSKVFPKIRGVIVEIPVNPDVKP
FT                 VQQPYRRAPFALEKQNCR"
FT   CDS           3927..6260
FT                 /product="Gypsy-236_AA-I_2p"
FT                 /translation="MFGISCAPELFQKVMESVVAGLDGVVVYLDDIMVWGR
FT                 NSEEHDQRLKALLGRLQDYGILLNKEKCVFGVCELEFLGHEMSSSGIRPTE
FT                 SRVAAIKSFRLPRNVAELRSFLGLITYVGRFIPSLADKTEPLRRLLRIGEK
FT                 FDWKEEHSQAFEEIKRAVNETNCLGYYDPNDLCIVVADASPSGLGAVLLQQ
FT                 NANGNRRIISFASKSLTEIERKYFQTEREALSLVWAVDRFQLYLLGKKFKL
FT                 ITDCKPLKFLFKERSKPSARIERWVLRLQTYNFDVVYEPGANNLADALSRL
FT                 SVTNPVAYRSSDEECILQLALEGFPSAISVEEVEEETLKDDVLQSVQRGLE
FT                 TGIWNDMSKNFKPFSSELCLARNLLLRGDRLVIPEKLRSRMLEIAHESHPG
FT                 IVVMKRRLRQKVWWPEIDKQVELFVKKCKNCTLVSTLNPPEPLNRTKLPEE
FT                 AWADLAIDFMGPLPSGHNLLVMVDYFSRFTEVIIMKQITANLTVKALHETF
FT                 CRFGMPESIKTDNGPQFISIELQDFCKHFGIEHRRTTPYWPQANGEVERIN
FT                 RSIGKRLKISQETTGADWQWDLRTFVLMHNSTPHSTTGVAPSILMFGRQLK
FT                 DKLPGLLLKGSNILEEIHERDFLRKMKGAEYADLRRGAKPSDICQGDTVVT
FT                 KRIHKENKLSTTFDPEEYLVIDRNGSDITIKSKESGKVIHRNVVHLKKLFA
FT                 DTEHPQSLAGKSEAEMDAGELLVPGQKHTTTEGGETAKVRGNQKSLLDTGT
FT                 EGNATIRPRREVKQPSYLKDYTIDKID"
XX
SQ   Sequence 6281 BP; 1969 A; 1082 C; 1514 G; 1712 T; 4 other;
     gtggcgtacg aggagaataa tttcgggaac ggtgattgat tgtgaaatta ttccggatag        60
     atccattgaa tttcggacgg tttgatttga tagctcaact tgagtgattt ttattttgat       120
     cagtatctgg tgtttgagta agtatggtgc aaaaaaaata tctttggaag tgcattcggt       180
     ttgttgaaga agcgaaaagg tcaaataggt tatggtatga atgtgaagga atatgatagt       240
     gcaaatgcaa gaaatggcag ttgkttgcag cggaaaagaa aaacatggga aacatagcat       300
     gcgaaaagwg tttggagtac tcaaaatggc cgtcgacagt gagcattgta taggatgctg       360
     ggaaaawtca tgcatccaaa ttgggaaatg ttgttggaaa caagatggcc aattgtgtaa       420
     agctataaag tagtgtatgt tggtaaaggt gtggcgctgg aaaaaaaaat taatcgtctc       480
     aattgaaaaa tgtgtttgga acaagatggc caacttcgtg aagctgtaaa gtagtttggt       540
     aatggtgtag cagtgagaaa atcatacagg gatgttcggg gctgtgtgtt tgaaagttta       600
     ctactacgaa gaagttacag tttactgcta cgaagagaag aaaaattttt gtgattgtat       660
     gacaagaaac ataaaatgta gtgatcacca atacatgtga atacttacgt tgttttattt       720
     cttattgaaa atggaagtaa gagtgagaac agaaagtgtc gacgagccaa cactgctgca       780
     cagatacatt tttgcacacc gttttgctca acttgtgaat gtgtgagtaa atatataaac       840
     aaaattacta tatgcacaca ggcgcacact gctcgtttga tgaccagcgt agaattgtaa       900
     gtaagatgaa acgagaaaga aatgagaatg caacggctcg gtaagtcaga aacaaatttt       960
     ttttatcctt tttggaagac attttaatgg atcgtagcag ttgaaagcag tacaaattac      1020
     aattatggaa gacttaattg gttgaggggt tatgcaattg tcaaatcctg agtcaagggc      1080
     cgagagccgg attctcagtt gattgatttt cggtgaaatg ggccgtgctc cggattcacc      1140
     tatttaaaag ctgttgcatt tccatatgca tgtgttgctt gggtggaata ctagaagtat      1200
     acattctaca gcaatctaat aaattgttag atgtagtact gaaattgaca gacagaaaag      1260
     tgatcggtaa ttctgaacag ctgtggggaa ttgacaaaaa aaaaaaaaca aaaatcctga      1320
     gtcatgggcc gcgagccgga ttctcagtcs acaaattcac ggtgaaatgg gtcgcgtacc      1380
     ggattcactg aaagatggtg aaatgaaaaa agaaatgggg acatcctgag tcatgggctg      1440
     agtgccggat tctcattggt ttatgttttt ttggttatat tgaatgcgtt tccagtttgt      1500
     tgaaaataat gctgatgata gtctatgcag tagtttggaa gcattagtta ttcctacgta      1560
     gaagcgctat ttggttccaa tgaaactggg aatgtcgtat ttaaaaatgt tggaccgaaa      1620
     ttcgaaatca tggtcgttta ttatttcatg aaatgtacga tgtatgtact agaagagaga      1680
     tgacttaaaa tgatcgtcct gtaaaggcaa atacaaatgt gattgttata tatacattat      1740
     tgttttttaa ttctgcataa acgattatcc gggtgtatag gaatggttgt ggtgaacgta      1800
     tagttcgtgt tttgaatgga tgaagtgctc gtgtgatata gattatccga atgtaaaatt      1860
     atttttttat tcttctggta cagtcgatgc actttctaag atattgttgg atgtgatatt      1920
     ttttttattt gattgacaat gtaattaatt ttctcagacg atggagactt tcaggccagt      1980
     aaagcaattt gatgcgaaag tagaccagtc tcaattagct acggagtgga gaaaatggaa      2040
     gcgtagtttg gaatactact tggctgccag tggcatagca gggcaacgcg agaaaagaaa      2100
     tcagctgctt catcttggcg gaccagatct gcaggacatt tttgataatt taccaggagt      2160
     tcacgatgtt ccacacgtta ctccagatcc accattctat gacgttgctg tgcaacaact      2220
     tgattcccat ttccaaccat gcaggcgtcg aacgtacgaa agacacgtat ttcgccaaat      2280
     ttctcagctt actggagaac ggtttggcga tttcgttatg agattgcgtg tccaagctag      2340
     tcggtgcgat tttgatcaag agggtaattc agtaatggag agtatgataa ttgatcagat      2400
     cgcggaaaaa tgtatttcgt cagctcttcg caagaaaata ctagagaagg atcgaccact      2460
     agatgaagta gtagccattg gaaaaactat tgaggacgtc gagcagcaat gcaaggaaat      2520
     ggtacaaagg gagcatgatg ataaaccgtt gaccgtcgtg aataaagtaa accaacgggg      2580
     tttaccaccg gcaaaaacta atttccagcc ggcaaacaac cgatcgttcc agtaccaacc      2640
     tcggtctcaa cagggttttc gtcgaccgaa tttccgagac caatcgcgat tccggttcga      2700
     agccaaaagg aattggacga gttctggaaa tcctcctact tctggagcgg aaggaggaca      2760
     tcaatcgatt aatgacaaca gaatttgttt tggatgtgga cgtcgtggac atctcaaagg      2820
     cagtgcatca tgtattgctc gagacgcaca gtgtctcaaa tgtagaactg ttggtcactt      2880
     tgctaaatgg tgcacaaaac gaacgaatga agactctctt ccaaatcctt cctcagctaa      2940
     gcgcataaag gctgtagttg actccgatga caactcgaaa atgtacggta actcagatct      3000
     tccagaaaaa gagcaagaca tttgcttcat aatgggtgga aatgttttcc gtttcaaaat      3060
     cggaggtgtt gaaaccatta tgaccattga ctcaggcgcc gcagccaata tcatcgacct      3120
     taagacatgg gaaacactca agaaacaggg agctaaagtt aatttcaagc cacacgtaga      3180
     tcggtcattc aaggcttatg gttcgtcgac ccctataagc atggcgggaa tgttcattgc      3240
     tgaaattgag acgggtaaca acaaagttga agctactttc tatgtagcta aaaatggctt      3300
     gcaaagtttg ttgggagacg aaacggcaaa aaagcttaaa gtcttgaaaa ttgggtacaa      3360
     tgttggatcg attcaagatg tttcaaaggt atttcctaaa ataagaggtg ttattgtgga      3420
     gattccagtt aaccctgatg ttaagcctgt gcaacagcca taccgtcgcg ctccatttgc      3480
     gttggaaaaa caaaattgcc gataaacttc agtatctact tgaccgggat attattgaac      3540
     gagtgcagca accgtcggct tgggtttctc caattgtacc cgtcgtgaag gataatggtg      3600
     agattcgtct ttgtatcgac atgcgcagag caaatcaagc ggttgttagg gaaacacacc      3660
     cattacctat tattgaggaa cttttcggag gaatcaacgg tgcagttcgg ttctccaagc      3720
     tggacatcag agaagcttat caccaggtcg aaatttctga acgatcaagg gaaatcacaa      3780
     ctttcattgc taagcaagga ctgttcaggt aaatggaact gtgtgctgga tggatcaatt      3840
     gaaattaaat aaataaaatg aaaatatttg gttcttaagc gtttttattg agttcttatt      3900
     tatatttata cagatttaaa aggctgatgt tcggaataag ctgcgctcct gaactatttc      3960
     agaaggtgat ggagtcagtg gtagctggtt tagatggagt agtcgtatat ttggacgaca      4020
     taatggtttg ggggcgaaat tcagaagagc atgaccaaag actgaaagca ctactcggtc      4080
     gcctgcagga ttacggaatt ttacttaata aagagaaatg tgttttcggt gtttgtgagc      4140
     tagaattcct tggccatgaa atgtctagct ccggtattcg accaacagaa agcagggtcg      4200
     ctgctatcaa gtcatttcga cttccgcgta acgttgcaga gcttcgcagt ttccttgggc      4260
     tcataacata tgtaggcaga tttattccgt ctctggcgga taaaactgag ccactacgaa      4320
     gactgttgcg cattggagaa aaatttgatt ggaaggaaga acactctcaa gcgtttgaag      4380
     agattaagcg tgctgtgaac gaaaccaact gtcttggtta ttatgacccc aatgacctct      4440
     gtatcgtagt agctgacgca agtcccagcg gattaggtgc tgtattgcta caacagaatg      4500
     caaatggaaa caggagaatc atttcttttg ccagcaaatc attgacagaa atcgaaagaa      4560
     aatattttca aactgagagg gaggccctat ctctggtttg ggctgttgat aggtttcagc      4620
     tttatttgct cgggaaaaag tttaagctaa taactgactg caaacccctg aagtttctat      4680
     ttaaagaacg atcaaaacct tctgcgagaa ttgagcgatg ggtattacgc ctacaaacgt      4740
     acaattttga tgttgtgtat gagccgggag cgaacaattt ggccgatgcg ctttctaggt      4800
     tatcggtgac caatccagtg gcatatcgat cttccgatga agaatgcata ttacaactag      4860
     ctttagaggg atttcctagc gctatatcgg tcgaggaagt cgaagaagag acattgaaag      4920
     atgatgttct tcaaagcgtt caacgagggt tggaaactgg aatttggaac gatatgtcta      4980
     aaaatttcaa accgttcagt tcagaattgt gtttggcgcg aaaccttctc ttaagaggtg      5040
     ataggttagt gataccagaa aaactaagat ctcgaatgtt ggaaatcgcc cacgaatctc      5100
     acccaggaat agtggttatg aagcgaaggc ttcgccaaaa agtatggtgg ccggaaattg      5160
     ataagcaagt tgagttattt gttaaaaagt gtaagaactg tactctggtt tcaaccctaa      5220
     atcctcctga accactgaac cgcaccaagt tacctgagga agcatgggca gatcttgcaa      5280
     ttgatttcat gggtccgcta ccgtctggtc ataatttgct cgtgatggtg gattatttta      5340
     gccgattcac agaggtgatt atcatgaagc aaatcacagc aaacttaaca gtgaaagccc      5400
     ttcatgaaac gttttgtcgt ttcggtatgc cagaatcgat aaaaaccgat aacggtcccc      5460
     agtttattag cattgaactc caagatttct gcaaacattt tggcatcgag cacaggagaa      5520
     caacaccata ttggcctcaa gcgaatgggg aggtggaaag gatcaaccgt tctatcggaa      5580
     aaaggctaaa aattagtcaa gaaacgaccg gtgcagattg gcagtgggac ctaagaacat      5640
     ttgtcctcat gcataactca acgccgcatt ctactacagg tgtggcaccg tcaatcctga      5700
     tgttcgggag acagcttaaa gacaagctac ctggtctgtt gttgaaaggt tccaacatct      5760
     tggaggagat tcatgaacga gattttttgc ggaaaatgaa gggagccgaa tacgctgatc      5820
     ttcggcgcgg ggcgaagccg agcgatatat gtcaagggga taccgttgtt acgaagcgta      5880
     tacacaagga aaacaaactg tcaacaacat tcgatcctga agagtatttg gtgattgatc      5940
     gaaatggttc cgacataaca ataaaatcga aggaaagcgg gaaggtcatc catcgtaatg      6000
     tggttcacct aaaaaagcta tttgcagata ccgagcatcc acaatcacta gcaggtaaat      6060
     cggaagcgga gatggacgcc ggagaattgt tggttccggg tcaaaaacat acaacaaccg      6120
     agggaggaga aacagcaaaa gttaggggaa accagaagag ccttctggac actggtacag      6180
     agggaaacgc aacgattcgc cctagaagag aggttaaaca accatcatat ttgaaagatt      6240
     acactattga caaaatcgac tagttttgag aaagagaggg a                          6281
//
ID   Gypsy-236_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-236_AA_;
KW   Gypsy-236_AA-I; Gypsy-236_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1074-1074 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 214 BP; 69 A; 46 C; 33 G; 66 T; 0 other;
     tgtagtatcg gtcctatcta catatatata attaccttgc tttatataaa tcttgagata        60
     atatcgacaa tcctaagaac attgatactt gtacacccct acctgagtga gcgatcagac       120
     caagcttccg gaataaagaa cattgttatt ttgtctatca accatacaag acgtgcgtgt       180
     ctttatacgg tatccgaaac aacgcgattc taca                                   214
//
ID   Gypsy-237_AA-I repbase;    DNA;    INV; 4794 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-237_AA_;
KW   Gypsy-237_AA-LTR; Gypsy-237_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4794
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1075-1075 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [2125-2505] - Reverse transcriptase
CC   Positions [3761-4228] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           676..2397
FT                 /product="Gypsy-237_AA-I_1p"
FT                 /translation="MPLIGAIEAYIPGSTSFAQYVEQIEWIFKINKIPEEE
FT                 KLAYFLGLCGRETYSELKLLHPGVDLATLTYDAMIDSLKRRFDKAETDMFQ
FT                 RYKFYNMIQSESEAAEDFILRVKLQAESCEFGAFKETAIRDKLVMGVQDKQ
FT                 IQQRLIEEEDLTLAKAEKLIVNRESAGVRTRMMNGNNLTVVAKIDDNKRKV
FT                 YSSSRSRSKERRSRNNRNFSNSHSRSRSRSSPTPRKSFYCNYCNKKGHTKK
FT                 YCYELKKQKKLHVKFVDAPPVQIPSTSDYFKRLREDPKDDDSESEENCMKI
FT                 TSVNRRNEPCFVRPIVEQVEMRMEVDCGSAVSVIDERDFLDYFGNLSLERY
FT                 DNRLVVVDGASLEVLGCVRVTVQLNGIREHQLELVVLKCAKRLRRIVPLLG
FT                 RKWLDVFFPEWRLPFSNERVNKISENLIENTVEDVKRKFDHIFKKTFLDPI
FT                 VGFEGDLILKEDRPIFKKAYEVPLRLRQKVIDHIDALEKDGVITPIEASEW
FT                 ASPVVVVVKKNQDIRLVIDCKVSINKLIVANTYPLPNAQDLFASLAGAKVF
FT                 CSLDLAGAYTQLKLSKKIPKVHGDQHP"
FT   CDS           2381..4795
FT                 /product="Gypsy-237_AA-I_2p"
FT                 /translation="MVINTLKGLYQYNRLPQGASSSASIFQKIMDQILSGL
FT                 PLVVCYQDDVLIAGVDFEDCKKNLYLVLDRLSKANIKVNLSKCKFFVDSLP
FT                 YLGHVVSDKGLMPCPEKVDTIRAAKAPQNVSELKAFLGLLNFYGKFIPHLS
FT                 SRLNCLHKLLKKDARFVWSHECQKTFDECKTYLLCSNLLELFDPKKPVVVV
FT                 SDASSYGLGGVIAHEIDGVEKPISFTSFSLNDAQRKYPIIHLEALAVVSTI
FT                 KKFHKFLYGQKFTVYTDHKPLIGIFGKEGRNSMYVTRLQRYVLELSIYDFD
FT                 IVYRPSSKMGNADFCSRFPLPIEVPKSLQREYIKNLNFSSDFPADYQQIAS
FT                 ETLKDNFLQQVQSFINFGWPNKPKPEFKDVHTHYQDLEIVDGCILFQDRIL
FT                 IPRTMQQTILKMLHKNHTGTQKMKQLARRSVYWFGLNKDIESHVKACRTCN
FT                 EMYIAQKPKTSNEWIPTTRPFSRLHADFFYFQQKVFLIIVDSNSKWLELEL
FT                 MPHGTDSKKVIRKFTALFARFGFPDVVVTDGGPPFNSTPFIKFLENQGIKV
FT                 LKSPPYNPQSNGQAERMVRLIKEVFKKYLLDPQLQSLDTEERIYNFLFNYR
FT                 NTCLDNGDFPSERVFCFKPKTDLDLINPKLHYKKQLTIPKHDKTNSQKRTV
FT                 IPAHDPLIKLTAGDPVYYKNHNPTDIRRWVRVKFIKKLSTNIFQISFGGRL
FT                 LSAHRQQLRLVENCSDRNFVPVLFDRDAPDRKHDPDPASTTNAEQTESEEE
FT                 DFYGFAAESCIYRAPVQSSTLPLSLNDASLSRKRKNVDTPVWRSKRLKHSK
FT                 KNS"
XX
SQ   Sequence 4794 BP; 1473 A; 868 C; 1035 G; 1418 T; 0 other;
     agttaaagtg gcgtacgagg ataaatcttt ggaaaattat tgtgatttcg agtgattagt        60
     gcctagtaat tggcagtttg cggttcgcta gtgtttgcgc ggcgttgaga aacagaaagt       120
     tcgtcgtgtg ctggtgagta acagtgtaac agccagctgc taattttgtt tgcggtgtta       180
     ggctttttgt tacctgttgt gttgctatcg tggtttggcc atcgcgtatt ttgtgaatgg       240
     ttggcagtgt tttgtcaaca agacggagtg atttttcgat tgttttgttt gcccggcagg       300
     ttcggtgtag ttatttaccg gccaactctt ttgcaaaggc agcaaacgaa tcgatcgtgg       360
     agtttggaag aaacggcggt tgtttatacc aagctgtgtg gagcatattt gggctgcggc       420
     tgaataagtg acggattttc gggctgtttt tggtgctgcc tgctggtgtg ctgttgctgt       480
     tactgttgct gttgtggaga agttgtgctg ctgattggac tgagccagta ttttttggtc       540
     ggttgtacag cgttgaaaat aaggtatgtg ttttgtttta ttttattgat tttcttgctg       600
     gaaatttgct ccaatttttg agattttttc tctgttgttt ttttttctaa ttattttcaa       660
     tcagaagtgc taaatatgcc gctgattggt gcaatcgaag cttacatccc tggttctact       720
     agctttgcgc agtatgtgga gcaaattgaa tggatcttca agatcaataa aattccagag       780
     gaggaaaagc tagcttattt tcttgggcta tgtggtcgag agacttatag tgaacttaaa       840
     ctgttgcatc ctggcgtcga ccttgcgacg ttgacctatg acgcaatgat tgactcttta       900
     aaaagacgtt ttgataaagc agaaactgac atgtttcagc gctataaatt ttacaatatg       960
     attcaaagtg aatcagaggc tgctgaagat tttatattaa gggtcaagct ccaggcggaa      1020
     agctgcgaat ttggcgcttt caaggaaaca gctatcagag ataagctagt aatgggggtc      1080
     caggataagc aaattcaaca gagattaata gaagaggagg atttaacgtt ggccaaagca      1140
     gaaaagctca tcgtaaaccg agaatccgcg ggcgttcgaa ccaggatgat gaacggtaat      1200
     aacttaacag ttgttgctaa gattgatgac aacaagcgga aggtttacag ttccagtcga      1260
     tccaggagca aggaaagaag aagtaggaac aatagaaatt ttagcaatag tcatagcaga      1320
     agccgcagta gatcatcacc aactccaagg aagtcatttt attgtaacta ttgcaacaaa      1380
     aagggccaca ctaaaaagta ttgctatgaa ctaaagaaac agaaaaagtt gcatgttaaa      1440
     ttcgttgatg ctcctccagt tcaaattccc agcacttcgg attacttcaa acgcctgaga      1500
     gaagatccaa aagatgacga ttccgaatct gaggaaaact gcatgaaaat tacatcggtc      1560
     aatcgtagga atgagccatg ttttgtaaga ccaatagttg aacaagtgga aatgcgtatg      1620
     gaagtcgact gcggttctgc agtcagcgtc attgatgagc gagattttct tgattacttt      1680
     ggaaatttat ctctggaacg gtatgataac aggcttgtag tagtagatgg agcgagtttg      1740
     gaagttttag gatgcgttcg agttacagtc cagttaaatg gcattcgaga gcatcaactg      1800
     gagctagttg tgttgaaatg cgccaagcgg ttgcgtagaa ttgtccctct tcttggaaga      1860
     aaatggctgg atgttttctt tccagaatgg cgtctgcctt tttctaatga aagagtcaac      1920
     aaaatttcgg aaaatctaat cgaaaatact gttgaagatg tgaagcgtaa gtttgatcat      1980
     atttttaaga aaactttcct agatccaatt gttggttttg aaggagattt gattctgaag      2040
     gaagatagac ccattttcaa aaaggcctat gaagtgcctt tgagactgag acaaaaggtt      2100
     attgatcaca ttgatgcttt ggagaaagat ggagtaatta cacccataga ggcgagcgag      2160
     tgggcttctc cagtcgtggt agtagttaaa aagaaccagg atatccgctt agtaatcgac      2220
     tgcaaagtgt caataaataa gctcattgtt gcaaatacct accctttgcc aaatgctcaa      2280
     gatctttttg catctttggc aggagctaag gtattttgtt ctttagacct tgctggagct      2340
     tacactcaat tgaaattgtc aaaaaaaatc ccaaaagttc atggtgatca acacccttaa      2400
     aggtctttat caatacaata ggctgcctca gggtgcatct tccagtgcgt caatatttca      2460
     aaagatcatg gaccaaattt tgagcggttt acctttggta gtttgttatc aagatgacgt      2520
     tctaattgca ggagttgatt ttgaagattg caaaaagaat ctttacttag ttctagacag      2580
     gctttctaaa gcaaatatta aggtgaatct tagcaaatgc aaattttttg tagattcttt      2640
     accttatctt gggcatgtag tttccgataa aggtcttatg ccgtgtccag aaaaagtaga      2700
     cactatccgt gcagcgaaag ctccccagaa tgtgtctgaa ctgaaagctt tcctaggact      2760
     tttgaacttt tacggaaagt tcattccaca tttgtcatct cgtttaaact gtctccataa      2820
     attactaaaa aaagatgctc gttttgtttg gtcccatgaa tgtcagaaaa cttttgacga      2880
     atgtaaaaca taccttttgt gttcaaacct tttggaactt ttcgatccta agaaaccagt      2940
     ggtagtagtt tctgacgctt caagttacgg acttggagga gtgattgccc atgaaattga      3000
     tggtgttgaa aaaccaattt catttacgtc attttcattg aatgacgctc aacgaaagta      3060
     tccgataata catttggaag ctttggcggt agtaagtaca ataaaaaagt tccataaatt      3120
     tttgtatgga caaaaattta cggtatacac cgaccataaa ccactcattg gtattttcgg      3180
     aaaagaaggg cgtaactcta tgtacgtaac acgacttcaa cgctatgtat tggaactttc      3240
     gatatacgat tttgatattg tgtatcgacc ctcttctaaa atgggaaacg cggatttttg      3300
     ttcccgattc cctctaccta ttgaggttcc aaaatcgttg caaagggaat acataaaaaa      3360
     cttgaatttt tcgtcagatt tcccagccga ttatcaacaa atagccagtg aaacattgaa      3420
     agataatttt cttcagcaag ttcaatcctt cataaatttt ggctggccga acaaacctaa      3480
     accagaattt aaagacgttc atacacacta tcaagatctt gaaatagttg atgggtgcat      3540
     tttattccaa gacagaatac tcataccgcg cacaatgcaa caaacaattc ttaaaatgtt      3600
     gcacaagaat cacacaggaa cacagaaaat gaaacaacta gcgcgaagga gtgtatattg      3660
     gtttggttta aacaaggata ttgagagtca cgttaaagcg tgtcgaactt gcaacgaaat      3720
     gtacattgca caaaaaccaa aaacctccaa cgaatggatc ccgactaccc gaccattcag      3780
     tcgtctgcat gctgattttt tctattttca acaaaaagta tttttaatta tagttgatag      3840
     taattctaaa tggttagaat tagagctgat gccacatggg acagacagca aaaaggtgat      3900
     aagaaaattc actgcattat ttgctagatt tggattccca gatgtcgtgg ttactgacgg      3960
     aggtcctcct ttcaattcaa ctccattcat caaatttctg gaaaaccaag gtatcaaagt      4020
     gcttaagagc ccgccttata atccacagag caacggacaa gcagaaagga tggtaagact      4080
     gataaaggaa gtgtttaaaa agtacttact tgacccgcaa ttacaatctt tggacacaga      4140
     ggaaaggatc tacaatttct tgtttaatta cagaaacact tgcctagaca acggtgattt      4200
     tccttcagaa cgagtcttct gtttcaagcc aaaaacagat ttggatctaa ttaacccaaa      4260
     attacattat aaaaaacagc taactattcc aaagcatgac aaaactaaca gtcagaaaag      4320
     aacagttata cctgcacatg accctttaat caaactgact gcaggtgatc ctgtttacta      4380
     caaaaaccac aaccctacag acatacgtcg ctgggtaaga gtaaagttta ttaagaagtt      4440
     atctaccaac attttccaga tatcttttgg tggtcgtctg ctatccgcac accggcaaca      4500
     acttcgattg gtggagaact gttctgatcg gaattttgtc ccggtgttgt tcgatcggga      4560
     cgcgccggat cgtaaacatg acccagaccc agccagcaca accaatgcag aacaaaccga      4620
     gtcagaagaa gaagattttt acggttttgc tgcggaatca tgcatttacc gtgcacccgt      4680
     ccaatcttct accttacctt tgagtctgaa cgatgcaagc ttatcgagaa agcgcaagaa      4740
     cgtggacaca cctgtttggc gatcgaaaag actcaagcat tccaagaaaa actc            4794
//
ID   Gypsy-237_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-237_AA_;
KW   Gypsy-237_AA-I; Gypsy-237_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-242
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1076-1076 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 242 BP; 78 A; 44 C; 48 G; 70 T; 2 other;
     tgactatgta tattattgaa attaaatgaa attgcttata actagagggg gaagaattgt        60
     aggmttttmg gtcttatgga ccaaaccccc ccgttaatga gttaccacaa tgaactttaa       120
     tactcgtgtg agtgtcgctc tgcgactata aaagagcact gaataaacca gctgatcaat       180
     gtttatactt ggatcgtaac tagtaaacaa gtgttgtcac tccgtgaaag aagccaccct       240
     ca                                                                      242
//
ID   Gypsy-238_AA-I repbase;    DNA;    INV; 5626 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-238_AA_;
KW   Gypsy-238_AA-LTR; Gypsy-238_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5626
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1077-1077 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4568-5041] - Integrase core
CC   'GTACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1715..3094
FT                 /product="Gypsy-238_AA-I_1p"
FT                 /translation="MLRLRAQVKRCEYDKPNEMILDQIVEKCASSKLKQKM
FT                 LKRDMSLEEVEALGTSLEESEKKLKEFGGSTVRGDIQKVNSWGSFKKQPGR
FT                 VQLGNRWGQTSSNKPDGRERMSQGPDYDSQRYTNRSIPVCFACGRRGHVKG
FT                 AESCAAKGAACMKCGNIGHFARQCLKRPNTRQPSGLPPKRVRMVQGHSEED
FT                 KSDGYIFYAMGSNTFRFTVGGVEIPMTIDSGAAANIVSKEIWEEMKEAGVQ
FT                 VWNMTQEVDRNFTCYASETPMKIVGSFMSTIEGGGRQTAAQFYVAEKGQQC
FT                 LLGDDTAKVLKVLKVGFDIGNIANEPAKEFPKFKGVVVEIPIDQAIQPVQQ
FT                 AYRRAPYALEDKVEEKLRVLLAQGIIEKVRGPSPWVSPMVPVLKESGDVRL
FT                 CIDMRRANQAVLRETHPLPLVDELLGSVNGAVRFSKIDIRDAYHQVEISEK
FT                 SRPITTFVTKNGLYR"
FT   CDS           3254..5107
FT                 /product="Gypsy-238_AA-I_2p"
FT                 /translation="MFGICCAPEIFQKTMENVLAGLDGIIVYLDDVVLFGA
FT                 SEKEHNERLQALRNRLDEYGILLNHAKCVYNVEEVVFLGHVLNKNGIRPTE
FT                 HRMIAIKSFREPKNVSELRSFLGLITYVSRFIPHLASKTESLRQLLRGGVA
FT                 FRWGDMHRRAFDEIKEAISDIGYLGFYNKLDITKLIADASPDGLGAVLLQE
FT                 NSEGETRIIAFASKALTELEKKYFQTEREALALVWGVEKFSLYLLGRRFQL
FT                 ITDCKALKFLFNSRSRPCPRIERWVLRLQSYDYEVIHEPGASNLADALSRL
FT                 SIRTPKAFDSSGEAYIHQLLEYSVPDAVTLVDVKEASLEDETLQELRKALE
FT                 TDQWEDKVKGYKQFKTELLVMGDVLMRGDRLIIPEKLQQNVLLCAHEGHPG
FT                 MSAMKRRLRQKVWWPKIDEQVEKCVKDCNACTIVSTTGPPEPMMRSRMPTR
FT                 AWSDVAIDFLGPLPSGHNLLVMIDYFSRFAEVVVMKQITAERTIEALFETF
FT                 SRFGIPEVLRSDNGPQFISGILGTFCREYGITQQKTTPYWPQANGEVERMN
FT                 NTILKRLRISQELESPDWKWDLRNFLLMYNSTPHSITGVAPSALHVWTCTA
FT                 GQTTERTGNYRKINRKHQGS"
XX
SQ   Sequence 5626 BP; 1696 A; 1026 C; 1450 G; 1454 T; 0 other;
     ttggcgacga gtataaaaat gtaagtagca aagcaactcc gaaagaagtt gattatttaa        60
     aaaattccga ttttaaccaa tatggctgac ataatttgca ttcggctgat ggtcggaaag       120
     atggcggggt cctggtgctg tgccccgacc gacatccgga tgataaagtg tgcaatcatt       180
     cacataaccc atccgcaaca ttgttgatgt gtgcgtaaag caaatttttg tttattgtcg       240
     tgaacggtat tttggccgac agtattggac cacgagaagt gattaccggg aagaacagtg       300
     ggggctatcg tatgtgccgg tgagtgtttg ctcctagttt ttttttctgc cacggtggtt       360
     gtgctgtcac gtttggattt gaaatttctt ataccgttat tgcgtcatat gcgttgtggt       420
     gggtgggtgt gaatgtgaaa tgtggaagga gaagaggaga gaagaatgga ataattgaaa       480
     ccgacgttga atgctgtgat cctaatgcaa gtaaaacgtc atatgtatag gtgatggcga       540
     tgttcacagt gttccgcaac aggtacgcat caggtgagta aacatgaaca aaagtgggcg       600
     atttcatgca ctgaaataaa tagctgcgga tatgtttgtg gatttgtttt attttatcgc       660
     tgagattata ttgaatttct ggcattgact gggggaaatc aaatgttgaa caaatttgtt       720
     tctctatatg atgcacagga ttattgattt ttcaatgttt gggaatgtag attgatgaaa       780
     taattgtgaa aagaaagtga tttaatcgga gaataatgga cagaaaatca gtagagggcg       840
     ggttcgccaa gttaaggaga gtcattatgg actagcgggt tcgctataca acgatggcgg       900
     gttcgctatg aaagacagcg ggttcgctac atgacaaggc taaagagtta gcggaatcgc       960
     ttggagttgg cggattcgct atggttaagc gggttcgcta taagttagtg ggttcactat      1020
     atgattaagc gggttcgctt gtaatcagaa agttggctat gaaattgcag gtcagtccaa      1080
     atttgtgtct gattggttac aaaataaacc ggtggtgtca ttatcaagtt taagcgggtt      1140
     cgctgatatt tattagttgg gacttaaggt caacaaggaa tgagatcaag aaatcatttt      1200
     aattttagtt tttttttttt gtaaactgag atcaaattta tttttcttca tactggatag      1260
     ttatgtgaat gatgcaacaa tttatccaat atactacagt agtatcattc tcagcatatc      1320
     tatcatatct agtttttggt ttgttcattt ttggaacagg gctaacagcg atagccggat      1380
     caaaccgttc cagtcctcga ttgaatcctc gcaacttccg ttggcctggt cgaaatggaa      1440
     aagagatttg gagtcgtatt ttgaatcgga aaagattgaa tctcagtacg ataaaagatc      1500
     aaaattattg taccttggtg gttccgattt gagggacata tacgacaatt tgccagagac      1560
     ggcgaatgtt ccccatgtgt tgaaagatcc tccgtattat gacgtagcta tagccaagct      1620
     cgacgctcat ttcgagccat tccgccgacg aacatatgaa cggcatcagt tccgacaaat      1680
     tttccagaat tcgtcggaac gcttttcgga tttcatgttg agactaaggg cacaggtcaa      1740
     acgctgcgaa tacgataaac caaatgaaat gattctggac cagatcgtgg agaaatgtgc      1800
     ttccagcaag ttgaaacaaa aaatgctgaa gcgtgatatg agtttggagg aagttgaagc      1860
     cttgggcaca agtttggagg aaagcgagaa gaaactcaag gagttcggtg gttcaacggt      1920
     gagaggagac attcaaaagg tcaatagttg gggatctttt aagaaacaac caggaagagt      1980
     gcagctcgga aatcgttggg gtcaaacctc gtcgaacaaa cctgatggtc gtgaaagaat      2040
     gagtcaagga ccagattatg attctcagcg gtatactaac cgttcgatac ctgtttgttt      2100
     tgcttgcgga agacgaggtc atgtaaaagg agcggaatct tgtgcagcta agggagccgc      2160
     ctgcatgaaa tgtgggaata tcgggcattt tgccagacag tgtttgaaac gaccgaatac      2220
     caggcaacca tcgggacttc cgccaaaacg tgtaagaatg gttcaaggac acagcgaaga      2280
     ggacaaaagt gacggatata ttttttatgc gatgggaagt aataccttcc gattcactgt      2340
     tgggggcgtc gaaatcccga tgacaattga ttcaggggcg gccgctaaca ttgttagcaa      2400
     ggaaatttgg gaagagatga aagaagcagg agtacaggtg tggaatatga ctcaagaagt      2460
     tgaccgaaat ttcacgtgtt atgcatcgga aacaccgatg aaaatcgtcg gcagtttcat      2520
     gtccaccatc gaaggcggtg gcagacaaac ggcagcccaa ttctacgttg ctgaaaaggg      2580
     tcaacagtgt ttgcttggag atgacacggc gaaagttctc aaagtgctca aagttggttt      2640
     cgacattggg aacattgcca acgaaccagc caaagagttc ccaaagttta agggcgtagt      2700
     ggtagagatt cccattgatc aagcgatcca accagtgcaa caggcctatc gtcgcgcgcc      2760
     gtatgctttg gaggataaag tagaggagaa gctaagagtt ttgttggcac aagggatcat      2820
     agaaaaggtg agaggaccgt ccccatgggt ttcaccaatg gtgccggtgt tgaaggagtc      2880
     tggagatgta cgcttgtgca tcgacatgag acgagccaac caggcagtgt tgcgcgaaac      2940
     acatcctcta ccattggtag atgagctgtt gggatcagtc aacggagcgg tgcggttctc      3000
     caaaatagat ataagagatg cgtaccatca agttgaaatt tcggagaaat cgcgaccgat      3060
     aaccacgttt gtgacgaaga atgggctata caggtaaatg gagatttata gaacttcaaa      3120
     aatcgagatc tgtttttttt tcgctatatt ttttgaaaag cagtcaagtc aaaattggta      3180
     ttggaatgaa ataaacgaaa gtaatcgatt gtttatattt ttgcattctt aactaaacag      3240
     atataagagg ctcatgtttg gtatctgctg tgcaccggaa atattccaga aaactatgga      3300
     aaatgttttg gcaggtttgg atggcatcat cgtgtatctg gatgacgtgg ttttatttgg      3360
     agcatcagaa aaagaacata atgagaggct tcaagcacta cgtaaccgat tggatgagta      3420
     cggtatactt cttaaccacg ccaaatgtgt gtacaacgta gaagaagtag tttttctcgg      3480
     tcatgttttg aacaaaaacg gtataaggcc tacggaacat cgcatgatag ctatcaaaag      3540
     cttccgagaa cccaaaaatg tttctgaact gagaagcttt ttgggactga taacttatgt      3600
     tagccggttt ataccacact tggcatcaaa aactgaatca ctaaggcaac ttctgcgagg      3660
     tggtgtagct tttcgttggg gtgatatgca ccgtagagca ttcgatgaaa ttaaggaagc      3720
     catttctgat attggatact tgggttttta taacaagctc gacataacga agttgattgc      3780
     agatgccagt cctgatggtt taggtgcagt attgttacag gaaaattctg agggggagac      3840
     gagaatcatt gcttttgcaa gcaaggcact gacagaactt gaaaagaaat attttcaaac      3900
     tgaacgcgag gcgcttgcac ttgtctgggg cgtggagaaa tttagtctct atcttctcgg      3960
     aagacgtttt caactgataa cagactgcaa agcgttgaag tttctgttca actcgcggtc      4020
     taggccgtgt cctcgtatcg aacgatgggt tctccgcctc cagtcttacg attacgaagt      4080
     cattcacgaa ccaggagcta gtaatctggc ggatgctctg tctagattat cgataaggac      4140
     accaaaggca tttgattcat caggcgaagc gtatatccac caacttctgg aatactcggt      4200
     tccggatgca gtaacacttg tagatgtcaa ggaggcatca cttgaagatg aaaccttaca      4260
     agaactgcgt aaagctttgg aaacggatca atgggaagac aaagtgaaag gatacaaaca      4320
     gttcaaaact gagttactcg tgatgggaga tgtcctcatg cgaggagatc ggctaataat      4380
     tccagagaag ctacaacaaa atgtcctact ctgcgcacac gaaggacatc cgggtatgag      4440
     cgctatgaaa agaaggctcc ggcaaaaggt atggtggcct aaaatcgacg agcaagttga      4500
     aaagtgcgtt aaagactgca acgcctgcac gatagtatca acaacaggac ctccagagcc      4560
     tatgatgcgg tcgagaatgc caacaagagc gtggtcggat gtggcaatag attttcttgg      4620
     gcctctgcca agtggtcata atttattggt gatgatcgat tatttcagtc gatttgctga      4680
     ggtagtagtg atgaagcaaa tcacagccga acgcactatt gaagcattat ttgaaacatt      4740
     tagtcgcttt ggtattccgg aagtactgcg gtcagataac ggccctcagt ttattagtgg      4800
     aatcctcgga acgttttgta gagaatatgg tattacacag cagaaaacta ccccgtactg      4860
     gccgcaagcc aacggagaag ttgaaaggat gaacaacaca atcttgaaac gccttcgtat      4920
     aagccaggaa ctcgaatcgc ctgattggaa gtgggacttg aggaacttct tgctcatgta      4980
     taattcgacg ccccattcaa tcactggcgt tgctccttcg gcgttgcatg tttggacgtg      5040
     tactgcggga caaactaccg agcgcacagg aaactacaga aaaattaaca gaaagcatca      5100
     gggatcgtga ctggactaaa aaagttacag cagcagaatc ggagaacaag aaacgtcgag      5160
     caaaaccgaa tgaactgaag gaaggagaca ctgtggttgc taaaaagatt ctaaaagaaa      5220
     acaaactttc cggaaatttt ggccacgaac gattccagat actcaagaga tcaggtacgg      5280
     aggttgaact gaagtcaatg gaaacaggcc ggacgtatca caggaatgta gcacatttaa      5340
     aacgaatcag cgaagataca gagccttacg gagaaagcac gacaggtgga gaaacatcaa      5400
     ctggaaactt gtcatcgtct aatcgggtga taaactctag agaacgcaga gagcacaggg      5460
     ttcccagcta tttgcaagac ccgcgcgcgg cggcgccggg cgggccggcg gcgcccgccg      5520
     cggcggggcg ccccgcgccg cgcgccgcct gaagttacgt gacggtaacc ttatttctaa      5580
     cagtgtatgt taaaacagta gaatctaata ataagtaaag ggggaa                     5626
//
ID   Gypsy-238_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-238_AA_;
KW   Gypsy-238_AA-I; Gypsy-238_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-205
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1078-1078 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 205 BP; 66 A; 30 C; 45 G; 63 T; 1 other;
     tgtggcatct gagtttcatg attatatttg tatcagtgta atcataaggg acgagttgga        60
     aaacggtatc gataggasag aagtgttgaa gtacgctgcc ggagtaaacg tgcttttaag       120
     taactcgacc gacaaataat aaaaagttaa agtatatttc atatcgtgtt attaagtgca       180
     ccattcgaag atctccgttt tcaca                                             205
//
ID   Gypsy-239_AA-I repbase;    DNA;    INV; 4100 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-239_AA_;
KW   Gypsy-239_AA-LTR; Gypsy-239_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4100
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1079-1079 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3190-3669] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1237..4092
FT                 /product="Gypsy-239_AA-I_1p"
FT                 /translation="MKTIIEKSKINILKCPIMNGETNGAENKVKNINLVCD
FT                 FKTIKNVGDIGKDHLSTLNNVLEMYYFNFNRPICPEINYEMKIMLKSGAPF
FT                 HFKPRRLSQNDKIKVDDKVNELLKLGIIKESDSPFASPIVVIPKKDNDIRL
FT                 CVDYRKLNKDTYRDNYPLPLIEDIYDKLKGKSVYTILDLKSGFHQIKISSE
FT                 CTKYTSFVTPTGQYEYLRVPFGLCNAPAVFQRFVNKIFKSLIDEGKVVVYI
FT                 DDILIASETLKEHFETLKQVLTILSRNLLELNLDKCKFCFNEIDYLGYSIN
FT                 EYGRKPSKSHIEAISNFPLPKNSKDVQRFLGLTSYFRKFIKNFASIANPLY
FT                 NLLKKDVEFVFGDKEIHAFELLRNKLITAPVLAIYDPKAETQLHCDASSFG
FT                 FGAILLQKQNNGNYHPVSFFSKRTDEYEKKLHSFELETLAVVHAVKRFHVY
FT                 LSGLKFKIFTDCNALAQTLAKKEINPKISRWAMFLENYNYTLEYRDGVKMQ
FT                 HVDALSRFSMGEIEKKSDNRTLNENKEQNICLLDIEDIERNVILAQEQDEK
FT                 IRNIKTHLESNTFPNFELRNGVLFRKDSEKFLLVVPKTMIDNIIRICHDKL
FT                 GHIGIEKTIIEIKKFYWFSSMKKIVKKYINNCLSCIFYSPSDTKKEGFLKN
FT                 IDKGQNPFQTIHMDHYGPIQLQSSKNFKYILVIVDAFTKYVKFYPTKTTNT
FT                 KEVIDNLIIYMNHYSKPSRIITDRGSCFTSEQFKNFCMNQCIHHIKTASYT
FT                 PEANGQAERINRTLTPMLAKLLDDTNLKWDNLLPNLEFIYNNTYNRSIKNF
FT                 PSILLFGTFQNNLNNETNNIEIFVKNNQLSSRNYNLSEIRAKAKDNILKLQ
FT                 EYNKEMVDRKRKPVQNYKEGDFVVLKTNVDNKLCKKFKGPYIIKKMLPNDR
FT                 YLVTDIDGFQVSSLPFSSICSPNNMKKWLSDSSVLSNYDVDEDVDESG"
XX
SQ   Sequence 4100 BP; 1517 A; 613 C; 724 G; 1245 T; 1 other;
     cgtattttac taaaatatca gaagtgggat atgaacacgt tcctgcggag tcattcacgg        60
     tcggaagttg aagttatgga gaatctcgga agttttcttc cttcccaaga cgtcaataac       120
     cagtccgata cgctgaacgc tgaagtagca aacactaata ccggaggaag tggagatgcc       180
     cttactgtgg atcaaagatg ttgtactaca aaacgatcga taaagctaga cgaactgtcc       240
     gcctttttgc cgttcttctc gggagcacca gacgaagacg ttgaattgtt catcaataca       300
     gtggagaaga ctcgaaaaac gttcaatgta gaagaagatg taatgaaact gatgattttc       360
     aagcaccttc gaagtaatgc gaaaatatgg ctatcgtcac aaccggatgt atttgaaatg       420
     aattatcaag gtgtaatcaa tctaatcaag acaacgttca ttgtgtcctt cagcctgttt       480
     gaaacaagaa agcaattaga atttcgaaag tggagtcctg aagaaacgtt tttggaatac       540
     tttgttgcaa aaagaaacct tgctgtgccg ctgaaattac ctgaaggaga attgatcgaa       600
     tatgccattg aaggaatccc cgatcgtcat ttgaaaaatc aagcaaaata gggattttcg       660
     actgttgcaa gccttctcaa agcctttcaa gcgattcatc taccaaagca aaaattttca       720
     tacgcaagcc cccctgtttg ttacaactgt tatttacctg gacatattgc cacacattgt       780
     cggaaaccga gcagccatca atcaagaact tgtggtcgag atgctttccg taggaatcca       840
     gttgagagaa aacgttttgg aaatgagaaa ataccaagga tcgcagctgt tcaaaatgat       900
     ccagactttg ataacaagac ggttgacctc gaacatgacg gactggtaga tattcatttg       960
     acagatttta aaattaattt gaaagcgtta tttgatacag gaagtccagt ttgtctgata      1020
     cgccttagtt tagcaaaaag aagaaaaatt tatccttata atagcaaaaa cacattcaag      1080
     ggtatcggag gatctggact aaagattgtg ggtagattag taactaatgt aaaaattcaa      1140
     aatttaactt tcagtattga gtttttggtg gttcctgatt cggatatact ttcatatgac      1200
     gttataattg ggcgagatgt tattcttaat cctggaatga aaactatcat agaaaagagc      1260
     aaaattaata tacttaaatg tccaatmatg aatggcgaaa caaatggagc tgaaaataag      1320
     gtaaaaaaca taaacttggt ctgtgatttt aaaactatca aaaatgtagg tgatattggt      1380
     aaagatcatt tgtcaacgtt gaataatgtt ttggaaatgt actattttaa cttcaatcgt      1440
     cctatctgtc ctgaaattaa ttacgagatg aaaatcatgc tgaaatctgg tgcaccattt      1500
     cattttaaac caaggcgact ttctcaaaat gataaaatta aagtagatga taaagttaac      1560
     gaattgctca aattgggaat aataaaagaa agcgattctc cttttgcaag tcccattgta      1620
     gttattccga aaaaagacaa tgatataaga ttatgcgtag attaccgaaa attaaataaa      1680
     gatacatatc gtgataatta tcctctacca ttaatagaag acatttatga taagcttaaa      1740
     ggaaagtcag tgtatacaat tttagatttg aaatctggtt ttcatcaaat caaaatttct      1800
     tctgaatgta ccaaatatac ttcttttgtt acgccaacag gtcaatatga atatttacgg      1860
     gttccttttg gcctttgtaa tgcaccagct gtgtttcaaa gatttgttaa caaaattttt      1920
     aaatcgctta ttgatgaagg aaaggtagtt gtttacattg acgatatttt aattgcttca      1980
     gaaacattaa aagaacattt tgaaacatta aaacaagttt taacaatttt gagtagaaat      2040
     ttgctggaat taaatttaga taaatgtaag ttttgtttca atgaaattga ttatttaggt      2100
     tattcgatta atgaatatgg tagaaaacca agcaagtctc atattgaagc tatatctaat      2160
     tttccactcc cgaaaaattc aaaagacgtt caaagatttt taggtttaac tagttacttt      2220
     agaaaattta ttaaaaattt tgcatcaatt gctaaccctt tgtataactt attaaagaag      2280
     gatgttgaat ttgtttttgg tgataaggaa attcatgctt ttgaactttt gagaaataaa      2340
     ttgataacag ctccagtttt ggcaatctat gatcccaaag ctgaaacaca attacattgt      2400
     gatgcaagct ctttcggttt tggtgcaatt ttattacaaa aacaaaataa tgggaattat      2460
     catcccgtta gtttctttag taagagaact gatgagtatg aaaaaaagtt acatagcttt      2520
     gagctagaaa cacttgctgt tgtgcatgct gtgaaacgat ttcatgtata tttgtccgga      2580
     ttaaaattca aaatttttac tgattgtaat gctttggcac aaacattggc taaaaaagaa      2640
     atcaatccta aaattagccg atgggcaatg ttcttggaaa attacaatta taccttagaa      2700
     tacagagatg gagttaaaat gcagcatgta gacgctttaa gtagattttc gatgggtgag      2760
     attgaaaaga aatcggataa ccgtacgtta aatgaaaata aagagcaaaa catttgtctg      2820
     ttagatattg aggatattga aagaaatgtg attctggcac aagaacagga tgaaaagatt      2880
     agaaacataa aaacacattt agaatcaaat acctttccga actttgaact gagaaatgga      2940
     gtgttgttca gaaaagatag cgaaaagttt ttacttgtag taccaaagac aatgatagat      3000
     aacataatac gaatttgcca tgataaattg ggccacatag gtattgagaa aacaataatt      3060
     gaaatcaaaa aattttactg gttttcaagt atgaaaaaga tagtaaagaa atacataaat      3120
     aattgtttga gttgtatatt ttacagtcca tctgacacta aaaaggaagg gttcttaaaa      3180
     aatattgata agggtcaaaa tccgtttcaa acaatacata tggatcatta tggtccaatc      3240
     cagctccagt catcaaaaaa tttcaaatat attcttgtaa ttgtagatgc ttttactaaa      3300
     tatgttaagt tttatccaac caaaacaaca aacaccaaag aagtaataga taacttgata      3360
     atatacatga accactacag taaaccatca agaattatta cagatagagg aagttgcttt      3420
     acatcagaac aatttaaaaa cttttgcatg aatcaatgta ttcatcatat caaaacagcc      3480
     tcatacacgc ccgaagctaa tggtcaggct gaaagaataa acagaaccct tactccaatg      3540
     ttagcaaaat tattagatga tacaaatctt aaatgggata atttacttcc gaatttagaa      3600
     tttatttata acaatacata caatagatca atcaaaaatt tccctagcat attattattt      3660
     ggtacattcc agaacaattt gaataatgaa accaacaata tagaaatatt tgtaaagaac      3720
     aatcagcttt cgtcgcgaaa ttacaatttg tcagaaattc gagcaaaagc aaaagataac      3780
     atattaaaac ttcaggaata taataaggaa atggtggaca gaaaacgaaa gcccgttcaa      3840
     aattataaag aaggtgattt tgttgtctta aaaactaatg ttgataataa actttgtaaa      3900
     aagtttaaag gtccctatat tatcaaaaag atgttgccga atgatcgata ccttgttaca      3960
     gatattgatg gttttcaagt atcaagtttg ccattcagct caatttgttc accgaataac      4020
     atgaaaaaat ggctctcaga ttccagtgta ctctctaatt atgatgtcga tgaggacgtc      4080
     gacgagtcag gatgaccgaa                                                  4100
//
ID   Gypsy-239_AA-LTR repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-239_AA_;
KW   Gypsy-239_AA-I; Gypsy-239_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-131
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1080-1080 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 131 BP; 52 A; 25 C; 18 G; 36 T; 0 other;
     tgtagtattc agatattaag taattacatt acactaagct actcccaatc ttaagtaggc        60
     catgacttag acaagacctg acattagact gattaaggac cataactcaa taaacgttaa       120
     aactgataac a                                                            131
//
ID   Gypsy-23_AA-I repbase;    DNA;    INV; 4344 BP.
XX
AC   supercont1.118;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_AA_;
KW   Gypsy-23_AA-LTR; Gypsy-23_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4344
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.118; Positions   63330   67673.
XX
CC   Positions [1949-2410] - Reverse transcriptase
CC   Positions [3459-3761] - Integrase core
CC   'TATCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           341..2035
FT                 /product="Gypsy-23_AA-I_1p"
FT                 /translation="MEGWNISPFKFNHLPETQTRIEWMRWKRNFEVIVAAS
FT                 DEKNSTKIKNILLAKGGLELQDLFYSIEGADVVEDIEKGVDPYHVAIAKLD
FT                 GHFTPKQHDSFDRNEFCKLSLSITNEGKRETLGKFLMRCADQARRCNFGKT
FT                 ETESRELRIIDKVIYHAPAELREKLLQKEKLNLAQLTRIVNSFESIKLQWK
FT                 AIENTRFGDSSTLTVQDPIARINKLNTTFKHPGRTCFRCGQQSHHGNDREC
FT                 PARGRKCEKCHKIGHYAKVCRSGTSFKRSYEEPIMSHPEKRRKFGNVRAIV
FT                 ADENLEQDEPESFIFNIGDGDEYLWTKIGGVLIQVLIGSGRSKNIIDDKTW
FT                 QYMKQHGVRSCPSNVSNMDLRGYGPEAKPLEIGHAFEANIEVENTNSKHGM
FT                 NALFYVIKGGQQSLLGKETAKRLGVLKIGLPNQINSLTVLEKRSFPKMKNV
FT                 QVKIPINQNVTPVAQQVRRPPIALLSKIEDKLDHLLAMDIIEPVSGPAEWV
FT                 SPLVTIVKDNGDLRLCVDMRRANQAIQRERHMMHTFEDFLPRFKLARFFSR
FT                 LDIKDAFHQVISGRNNPT"
XX
SQ   Sequence 4344 BP; 1536 A; 738 C; 926 G; 1144 T; 0 other;
     tctggcgggc gagaataaat tgtcaagact ttcaagtcta ttcccatgaa tcacgaataa        60
     gaaatcaacc aaaactaaga ataaacgaat aaaacggtaa agcaattacg aagggtccga       120
     atccaaatcg cgtggaaaaa ccaaaactaa aagaaataac gattgaaaca agtaaggatt       180
     tgccattact aattggctag gtaacataag taagactgtt acgacaggac acactgctcc       240
     gacaggacac ttcgctgttg ttgcgaaaaa aaaacaacct atatgtggta ccatgacaac       300
     catctatagt gtaattttga aattttcagc ttgagaaaga atggaaggat ggaatattag       360
     cccgttcaag tttaatcatt tacccgagac gcaaacccgg atagaatgga tgcgttggaa       420
     acggaatttt gaagtcattg tggcggccag cgatgagaag aattcgacta aaatcaagaa       480
     cattctactt gcgaaaggag gtttggagct tcaagactta ttttattcaa ttgagggagc       540
     tgatgtcgtc gaagatattg aaaaaggagt tgatccgtac catgtggcta tagcaaagct       600
     tgatggccac ttcacaccaa aacagcatga ttcttttgat cgaaacgaat tttgcaaact       660
     ttcactatcg ataaccaatg aagggaaacg cgagacgtta gggaagtttt tgatgcgttg       720
     tgcagatcag gcgagaagat gcaactttgg aaagaccgaa accgaaagtc gtgaattgcg       780
     catcatagac aaggtgattt accatgctcc tgccgaatta cgagagaagt tattgcaaaa       840
     agagaaactg aatttggcac agttaacacg tattgtgaat tccttcgagt caatcaaact       900
     tcagtggaaa gctatagaaa acactagatt tggagatagc tcaacgttaa cagttcaaga       960
     tcccattgcg cgtattaaca agctaaatac tactttcaaa catcccggta ggacgtgttt      1020
     ccgttgtggt cagcaaagtc atcatggcaa cgatcgtgaa tgccctgcac gaggaagaaa      1080
     atgtgaaaag tgccacaaaa tcggacatta tgctaaagta tgtcgatcag gaacatcatt      1140
     caagcggagt tatgaagaac caattatgag tcatccagaa aaacgaagga aatttggaaa      1200
     cgtccgtgca attgtggcag acgagaatct tgaacaagac gaaccagaaa gctttatttt      1260
     taatatcgga gatggagacg aatatctgtg gacaaaaatt ggaggagtat taatacaagt      1320
     cctaattggt tcaggacgtt ccaagaatat tatcgatgat aaaacgtggc aatatatgaa      1380
     gcagcatggt gttaggagtt gtccatctaa cgtctccaat atggatttga gaggatatgg      1440
     tcctgaagca aaaccattag agattggtca cgcatttgag gcaaacatag aagtggagaa      1500
     tacgaacagc aagcatggaa tgaacgcatt gttctatgtc atcaaaggtg gacaacaatc      1560
     gctactcgga aaagaaactg ctaagcgcct tggagtattg aaaattggat tgccgaatca      1620
     aatcaactcg ctgacagtct tggagaaacg ctcattccca aaaatgaaaa atgttcaagt      1680
     aaaaatccct attaatcaaa atgtgacacc agttgctcaa caagttcgtc gacctccaat      1740
     agcattactt agcaaaattg aagacaaact ggatcatctt ttggctatgg acatcatcga      1800
     gccagtatcc ggtccagcag aatgggtatc accacttgtt acgattgtga aggataacgg      1860
     tgatttacgt ctctgtgtgg acatgcgacg tgcaaatcaa gcgattcaga gagaacgtca      1920
     tatgatgcac acttttgaag attttttgcc tcgtttcaag ttagcacgtt tcttcagccg      1980
     tttagacatt aaggatgctt ttcatcaggt tatttctgga agaaataatc ctacgtaata      2040
     tttttttcaa ggatactaat attgttgatt gttattttac ttcgatttga ttacattaga      2100
     ttgaattaga agaatcgtct agatacataa caacatttat atgtcataag ggcttattca      2160
     gatataaaag attaatgttt ggtatttcat gcgccccgga aatgttccaa aaagttatgg      2220
     agcatatttt agcggaatgc gaaaatgttg tgaatttcat agacgatatt atggtttttg      2280
     gtgaaacaga agaagagcat aacgaagcgt taaacaaagt ccttaaagta cttaaaattc      2340
     gcaatatttt actgaaccaa gaaaaatgta ttttcaaagt tagccaagtt gaatttcttg      2400
     ggcatgcaat gtcacctgaa ggaatccgcc caacagttag caaagtggaa gcgatacaaa      2460
     aatttcgaga accaagaaca tctgaagagg ttataagttt tcttggcctt gttacatgtg      2520
     taggaaaatt cattcctgat ttagctacaa tcacggaacc acttcgacag ttaatatgta      2580
     aggacaacaa gttttgttgg ttacagaaac acaaagaaag ctttgaacat ttgaaaacac      2640
     tcatagccaa tgtaaagacc ttgtcgtttt tttataattc attaagcact agagtaattg      2700
     cggatgcttc tcctgtagct ttaggtgcag tacttgtaca atttgatgga gaatcaaact      2760
     ctgatcctcg tatcatcagt tatgcgagta aaagcttgac agtaacagag aaaaggtatt      2820
     gccaaacaga aaaagaggct ttagcgctag tatggtccgt ggaaaaattt tcaacttact      2880
     taattggtcg agagtttgag ttggaaaccg accacaagcc attagaagtt atatttgctc      2940
     ccacatctaa accctgtgcc agaattgaac ggtgggtact ccgacttcag tcattcaagt      3000
     tcacggtaaa atatcgaaag gatcaggtaa tatagcggat tcgttgtcac gcctcgtatt      3060
     tgaagataat tcagctgaat ttgaatccga taatcatttc tttgtacttg ctgttcaaga      3120
     atctgttgcg attgatgtga gcgaaattga aaaagtgtcc aaagtggacc cagagctgaa      3180
     ggcggtaagg gactgtttgg aatcaggaaa ttggaataat tcaacagcaa aattattcga      3240
     accattcaaa aatgagctgg gcatgataga ggacactata gtacgaggaa ataaactagt      3300
     tgttccacaa ggattacggt caagaatgct tcagcttgca catgaaggtc atccaggaga      3360
     aagaatttgt tggtaatagt tgattatttt agtagatata aggaggtgga agttatgtca      3420
     aagatcggtt cacgtgagac agtcaataga cttgataaaa tatttacgcg attaggatat      3480
     ccaagaacga ttaccctgat aatgcgaaac aatttattgg aaaggatttt gaggaatatt      3540
     gtaatataca tggcattcat tttaatcact cagcgcctta ctggccacaa gaaaatggat      3600
     tagtagaaag acagaaccgg tcacttctga aaaggttgca gattaataat gcattgaaga      3660
     gagactggaa gaaagatttg aacgattacc tcctaatgta ttatacgact ccacattcaa      3720
     ctaccggaaa aactcctaaa gaattgtgct atggacgcac aataagatca aagctgccct      3780
     ccattgacga catcgagact attccggaat cgtcggatta tcgcgatcaa gataaactac      3840
     ataaacaaaa ggagaaagaa agagaggata ggagaaggca tgtccaagaa tcggacatct      3900
     gtagcggaga tatggtgttg atgcaaaacc ttctaccagc aaacaaactg gcaactacat      3960
     ttggtaaaac gaagtataag gtgttggaac gtagaggtca tcgagctata gtagaaaacc      4020
     aagacacggg tgtaaaatac gaacgaaaca ttgcacactt gaagaaaatt aacattccac      4080
     aaacgtcgac ttctccgatg cctagtcata caacaagaac ggaaactagc caaaagataa      4140
     ttgaagcacc agcaattgaa gatgcagtag caacaaggtt tcaagaagat gagccaccct      4200
     ttcgaggatt tgaataagta gaagaagaat ttattggaat tggaaaaaaa taacttataa      4260
     caatataata aatttatgcc aaataatact tgagaattta gagaacttat gagatttgaa      4320
     ctttaaatta tatgaaaaag gaga                                             4344
//
ID   Gypsy-23_AA-LTR repbase;    DNA;    INV; 107 BP.
XX
AC   supercont1.118;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_AA_;
KW   Gypsy-23_AA-I; Gypsy-23_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.118; Positions   63223   63329.
XX
SQ   Sequence 107 BP; 38 A; 12 C; 22 G; 35 T; 0 other;
     tgtgctgtta tattatgtca gtaggctatg gaaatgtgtt aggaataata aatcagatta        60
     ttgtatgcat tcaaagaaca cggaagtatt tactacaagg tatcaca                     107
//
ID   Gypsy-23_AnFu-I repbase;    DNA;    INV; 4586 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4586
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2908-2908 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..4573
FT                 /product="Gypsy-23_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, integrase, and Mucin-like domain."
FT                 /translation="MQEEEADRRASQSWQDALAPSTSQPPAHTERHDAQAQ
FT                 PPQQPQFAQQNGALPPFSTLPQMNIPTGQSDANSQMLQILQQQMIAQQQQM
FT                 AQQQQILMQLLRQRNDLTTGDTGQEKILDSLCGHIKEFRYDVETGATFAAW
FT                 YKRYEDLFQKDAARLDDEAKVRLLLRKLGTSEHDRYTNYILPKHPREYILS
FT                 ETVSKLTALFGTKESLLHKRFRCLKLTKLRSEDFVMFACRVNRGAVDFELG
FT                 KLTEEQFKCLVFVCGIKEEEDADFRTRLLRRIEEQQDVTLDQLSAECQRMT
FT                 NLRHDSDMIKSDKAEKVLAIKENTHRQDRPPNKNQFNEASKPSRPCWLCGS
FT                 PHWTRECTFRTHKCTQCGVIGHREGYCNQQNKPPQRTKPFVKYANMRSVTI
FT                 NVHNIRDRRKYVNIKLNGSQVRLQLDTGSDISVISRNLWKKIGSPQLTPPS
FT                 VIAKSASGDKLGILGEFEANVEVSQKKRQAVIYVVESELALLGTDLAEIFS
FT                 LWSSPIDEFCNNISSATIAPEAILRKFPLLFQPCMGICTKAAITLHLKPDG
FT                 RPVFSPKRPVAFAMREAVEAELDRLQKLNVITPVEYSEWAAPIVVVRKSNG
FT                 KLRICGDYSTGLNAALHPHDYPLPLPEDIFAKLGKSTIFSQIDLSDAFLQV
FT                 PIAEQSRQMLTINTHKGLYLYNRLPPGIKVAPGAFQQLMDQMLAGMEGVSC
FT                 YMDDIIVGGRTQNEHDELLSETLKRIQEYGFTIRSDKCSFNKNQVRYLGHI
FT                 IDKHGIQPDPAKVAVIKDLPPPHDIAGVRSFLGAINYYGRFIPNMRSLRYP
FT                 LDNLLKNDTTFNWSPECQKVFEQFKSLLATDLLLTHYDPGREIIVSADASS
FT                 VGLGATISHKFPDGSYKVVQHASRALTKAETNYSQIDREGLAIIFAVTKFH
FT                 KYIFGRHFCLQTDHKPLLRIFGSKKGIPIYTANRLQRFALTLQLYDFDIQY
FT                 VSTHNFGNADILSRLIKRHDKLNEDYIIASISLEDDIRSVAVNSLTPFVLS
FT                 FREVENATKTDPVLQKVARYIKEGWPRNSIFNGDLARFYARKDALSIVDNG
FT                 ILFGERVIIPTALRQRCLRQLHHGHPGVQRMKSLARSYVYWPYLDKEITEL
FT                 VANCGACAAAAKSPPHSIPAPWNEATAPWQRVHIDYAGPIDGYSFLIAVDS
FT                 FSKWPEIIRTASTTSTATVRILRSLFSRYGNPITLVSDNGRQFISAEFEDF
FT                 CTTNGIDHLTTAPFHPQSNGQAERFVDTFKRAIKKISSDGTTIEDALEIFL
FT                 GTYRSTPNPQVPEQKAPATIMFGRQIRTCLELIRPVPRSEVKDNIEPHRSF
FT                 VRDDLVYAKLYARNGWKWIPGRVISKCGNVMYSVMTNDQKIIRSHINQLRR
FT                 RTADNTNSMEQRLLPMDILLDAWNLPSSSVAASTAQSSSGDPISQPSGSCL
FT                 NTPNSSTPPATPIPSSSVPMDSAVPSSSQPVEPHSPSSPSNRSGHQQGSCE
FT                 TEQQLPPRHSSRDRRAPRWLDPYLLS"
XX
SQ   Sequence 4586 BP; 1366 A; 1138 C; 1012 G; 1070 T; 0 other;
     gtggcgacga ggattttaag atcttatttt cattacactt ttagttggaa aggacagtga        60
     acccagtgca aagattccgc tcacaaggaa gcgtcgcagg atgcaagaag aagaagccga       120
     tcgtcgagcg tcgcaaagtt ggcaagacgc attagcccca tcgacctcac aaccaccagc       180
     tcacacagag cgccatgacg cccaagcgca gcctccgcag cagccgcaat ttgctcaaca       240
     aaatggtgcc ttaccaccat tttcgacgct accgcaaatg aacattccca ccggacagtc       300
     ggacgctaat tcgcaaatgt tacaaatttt gcagcaacag atgatagctc agcagcaaca       360
     gatggctcag cagcaacaaa tattaatgca actattgcgg caacggaacg atcttacaac       420
     tggcgatacc ggacaggaga aaattttaga ttccttatgt ggtcatatta aggaattcag       480
     gtatgatgtt gaaactggtg ctacatttgc ggcatggtat aaaagatatg aggacctttt       540
     tcaaaaagac gctgcacgtt tggacgatga ggcgaaggtg cgattgttat tgaggaagtt       600
     aggaacctct gaacacgata gatacaccaa ttacattctg cctaaacacc cacgagaata       660
     catactcagt gaaacggtct ccaagttaac ggctcttttc ggcaccaaag aatccctatt       720
     gcacaagcgt tttaggtgtt taaagctgac gaaacttcgg tcggaggatt tcgttatgtt       780
     cgcgtgccga gttaatcgtg gagccgtaga tttcgaactg gggaaactga cggaagaaca       840
     gtttaaatgt ttagtgttcg tatgtggtat aaaggaagaa gaagacgctg acttccgaac       900
     acgcctctta cgtcgcatcg aggaacaaca ggatgtaacg cttgatcagc tctccgcaga       960
     atgccagcgc atgacaaatc ttcgacacga cagtgatatg attaaaagtg acaaagccga      1020
     aaaagtactg gccattaaag aaaatacgca tcgacaagac cgtccaccga acaaaaacca      1080
     attcaatgag gcatccaaac cgagccggcc ctgttggtta tgtggatctc cacattggac      1140
     tcgagagtgc acgtttagga cgcataagtg cacacaatgt ggagttatag gtcaccgtga      1200
     aggttattgc aaccaacaaa acaaaccacc ccagcgcaca aagcctttcg taaaatacgc      1260
     taacatgcgc agcgttacaa taaacgtgca taacattcga gatcgacgaa aatacgtgaa      1320
     catcaagctc aacggcagcc aggtgcgtct gcaactcgat acgggatccg acatttccgt      1380
     aataagtcgt aacctatgga aaaagattgg tagcccacaa cttacaccac catctgtaat      1440
     tgcgaaatcg gcttcgggtg ataaacttgg aattctagga gaattcgaag caaacgtgga      1500
     ggtttctcaa aagaagcgtc aagccgtcat ttacgtcgta gaatctgagc tggcgctact      1560
     aggcactgat ctcgctgaaa ttttctcgct atggtcgtct cccatcgatg agttttgcaa      1620
     taacatctca agcgcaacga ttgcaccaga agcgatttta agaaaatttc cattgctttt      1680
     tcaaccttgc atggggatat gcacaaaagc tgccatcacg ctgcatctga aacccgatgg      1740
     ccgtcctgtg ttttcaccta agcgccccgt ggccttcgcg atgcgtgaag cagtagaagc      1800
     cgagctagac agattgcaga aattgaacgt gataactccc gtggagtact ctgagtgggc      1860
     agccccgatc gtcgtcgtgc ggaaatcgaa cggcaaattg agaatttgtg gagattactc      1920
     aaccggcctg aacgcagccc tccatccaca cgactaccca ttgccactcc cggaggacat      1980
     cttcgcaaaa ctgggtaaat caaccatttt tagccaaatt gatttatccg atgcttttct      2040
     gcaggtccca atcgctgagc aaagccgaca gatgctcaca ataaacacac ataaagggtt      2100
     atatctatac aatcgcctgc cgccagggat taaagtagcg ccaggtgcct tccaacaact      2160
     catggaccaa atgctcgctg gaatggaagg agtttcatgt tatatggacg acataatcgt      2220
     cggaggacgg actcagaacg agcacgacga actcctcagt gaaaccctca agcgcattca      2280
     agaatacggt ttcacaatac gctcagacaa atgctctttt aacaaaaacc aagtgcggta      2340
     ccttggtcac atcatcgata agcatggcat ccaacccgat ccagcaaaag tagcggtcat      2400
     aaaagatctt cctcctccac acgacatcgc cggcgttaga tcatttctag gcgccataaa      2460
     ctattatgga agattcattc caaacatgcg aagcctgcgc tacccattgg ataatctttt      2520
     aaaaaacgac actaccttca attggtcccc agaatgtcaa aaggtgtttg agcagttcaa      2580
     gtcgctacta gctacagatc tcctgctaac gcattatgat ccaggacgag agatcatagt      2640
     atctgctgat gcgtcatccg ttggtttagg tgcaaccatc agtcacaagt tccccgacgg      2700
     aagctacaaa gtggtccaac atgcatctcg cgctttaacg aaggcagaaa caaactacag      2760
     ccaaattgac cgtgaaggcc tggctataat attcgctgtg acgaagtttc acaaatacat      2820
     ctttggacgt catttctgcc ttcaaacgga ccataagcca ctactaagaa tctttggaag      2880
     taagaagggc attccaatat acaccgcaaa tcgtttacag agatttgctc taacccttca      2940
     gttgtacgat tttgacatac agtatgtatc cacgcataat tttggtaatg cagacatctt      3000
     atcacggctc ataaaacgac atgacaagct caacgaagac tatatcatcg ctagcatcag      3060
     tttagaggac gacattcgat cagttgcagt taattcgtta accccatttg ttctgagttt      3120
     ccgagaagta gagaatgcaa caaaaacgga cccggttcta caaaaggttg ctcgttatat      3180
     aaaggaagga tggccacgaa acagcatttt caatggtgat ctggcacgtt tctacgccag      3240
     aaaagacgca ctatctatag tggacaacgg tattttattc ggggagagag tgatcatccc      3300
     tacagctctc cgtcaaagat gccttcgcca attacaccat ggccacccag gtgtacaacg      3360
     catgaaatcg ttggcgagaa gttacgtcta ttggccgtat ttggacaaag aaattacaga      3420
     acttgttgca aattgcggag cctgtgcagc tgcagccaaa tcgccgccgc actccattcc      3480
     tgcgccatgg aatgaagcaa ctgccccatg gcaacgagtg cacatcgatt atgcaggccc      3540
     tatcgacggt tattctttct tgatagcagt cgactctttc tctaaatggc ctgagataat      3600
     acggacagcc agcacaacgt ctacagcgac tgtacgcatt ttacggagcc tgttttctcg      3660
     ctatggcaac ccaatcactt tggtcagcga caatggccgt cagtttatta gtgctgagtt      3720
     tgaggacttt tgtaccacaa atggaataga tcatcttact accgccccgt tccacccgca      3780
     gtccaatggc caagcggaaa ggtttgtgga cacctttaaa cgggcgataa agaagatttc      3840
     gagtgacgga actaccatcg aggatgcact tgaaatattt ttgggaacct accgttctac      3900
     gccgaaccct caagttccag aacaaaaagc accagcaacg attatgtttg ggagacaaat      3960
     ccgtacgtgt ttagagttga tacgtccagt tcctagatct gaagtcaaag ataatatcga      4020
     gccacatcgc agtttcgttc gagatgatct tgtttatgct aaactttacg cacgaaatgg      4080
     ctggaaatgg atcccaggca gggtgataag caaatgcgga aacgtaatgt atagtgtaat      4140
     gacaaatgac cagaagataa tacgcagtca tattaaccaa cttcggcgac gaaccgcaga      4200
     taatactaac tcgatggagc aacgtctttt acctatggac atcttgctgg acgcatggaa      4260
     cctgccatca tcatcggtcg cagcatccac agcgcaatca tcttcgggtg acccgatatc      4320
     gcaaccatcc ggttcgtgtt taaacacgcc aaattcatca accccgccgg ctacacccat      4380
     accttcatca tcggttccca tggactcagc ggtaccatct tcgtcccaac ctgtcgaacc      4440
     acacagcccc tcatccccgt ccaacaggag cggccaccag caaggatcgt gtgagacgga      4500
     acagcagtta ccgccacgcc actcctctag agatagaaga gctccgcgtt ggctcgaccc      4560
     gtacctgtta tcttaaaagg gggaga                                           4586
//
ID   Gypsy-23_AnFu-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-229
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2836-2836 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 229 BP; 52 A; 65 C; 52 G; 60 T; 0 other;
     tgttgtgttg agcacccctg cagcatccga ggcgatcccc gaggcactca ccgataatct        60
     agcgttatcg tgtagatgag tggccaccgt tcggatcgta gtcgcacgga ccgaagcgac       120
     actcgaccat tcccccacgc tcacgacgga cgtacattct tgctagtgtt tcgtttcctt       180
     gctgatctct tgttaataaa agtggttcta ccaaattacg tacataaca                   229
//
ID   Gypsy-23_AnMe-I repbase;    DNA;    INV; 5872 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5872
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6835-6835 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1195..2244
FT                 /product="Gypsy-23_AnMe-I_1p"
FT                 /translation="MSASMSFATLQIAVCQPKDGKEEVDKTTFDRWRELFE
FT                 AAMEFAGITSETLKMNAFKMKAGPSLLGILESTSTNDSAKDAKLFPYTNTM
FT                 DRLDHYFNSHYYVFRQRQKLRTMNQIKGESDYQFVKRVIESGKLCNYKEEQ
FT                 LIETIVDVIQVHAINPKVRMAGWKILKKRGTITDLLEKVRTCEIEKFNENA
FT                 FARDHRQNETTLEVSAVSHNTNAKMSRTREFQRDYPSYKQKHWGMQENRGF
FT                 SKGEFSKFSTNRSFGIRRILCWRCSSNTHQPENCYAIDKRCRRCNVIGHIE
FT                 RACHPDLLNNSKRYPTDVVEPAVPNKIRKIAAITESGIPGKLDHEQTAVSE
FT                 AFPTESE"
FT   CDS           2626..5856
FT                 /product="Gypsy-23_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="DVSQQVLQNNSIEINNFVRENKSLHSICQEKIDLVFI
FT                 TGYVAGLAIKFMIDSGADVNTIGKDSFDCLSKEDPKLSHIFNLKKGSDHHL
FT                 KAYGMEEDIPVIASFVAELFISNDRPRTMEKFYVVPNEKALLSRNTALRYS
FT                 VLQLGLNVPVKSYSGYNTIRLLPGEIFVLTDLIEFPKFNVAPVMLSYDKEM
FT                 PPSRNVFTSIPPAFKNETLKRLDDLLTTGIIERVTDKMENSFCSSLLVVPK
FT                 GKNDIRLVVDLRGPNKRIIRTPFRMPTLEAILSELNGASWFSTIDLSSAFF
FT                 HVELHQDCRHLTNFFAGNGTFRFKRLPFGLCNAPDIFQEILQTKILAGCPG
FT                 VVNYLDDILVFGSSKEEHDSNLKITLQRLREHNVRLNSTKCVFGSQSVKFL
FT                 GFNLSGDGWRVEDDKRKAVENFRRPESLSEVKSFLGLVNFTERFIHKRAEK
FT                 TTNLRALAKSDTFYWTTQEEQEFEYLKTRALNSIVRLGYFDHKDRTELYVD
FT                 ASPTGLGAVLVQYNEEGSPRVISCASKSLTQSEQKYPQTQKEALAIVWSVE
FT                 RFSYYLINKYFKVRTDSEANEFIFGGSHRTGRRAMTRAEAWALRLLPYHFG
FT                 IERVPGNMNVADVLSRLICKSQVDDAFDEDNEKHILHSLDAGDMSISWTEI
FT                 QTASETDEELEAVRLGVQTGKWSNALKRYESESKHLRTLGHIVYKDDLIIL
FT                 PTSLRSRAIKAAHRGHVGCEATKRILREFFWWPNMAKQAALFVSNCEICLV
FT                 ISKRNPPIPLSSRQLPDGPWEILQIDFLSLHGYGSGEFLLTVDTYSRYLHV
FT                 SEMKQTDARSTNAALCRVFSVWGLPLIIQSDNGPPFQGSEFIEYWESKGVK
FT                 VRKSIPLSAQSNGAIERQNQGVIKALAAAKQEGRPWRMALDEYIHAHNTRK
FT                 HHSRLGVTPFELLVGWRYRGTFPCLWNWKNKLDRNTVRENDAFSKLVSKQF
FT                 ADSRRGAKESNIMVGDIVLTTVLQRSKTDPTFSKERFTVLAREGAKIVLIN
FT                 GKGEKLTRNIQDVKRVPNGATEQSIEEELVDPIETTEIDYSESDHLKRPKR
FT                 IIQVPKKYKDSIMYHICYQE"
XX
SQ   Sequence 5872 BP; 2018 A; 1088 C; 1244 G; 1522 T; 0 other;
     atggcgcatg tcggtaagtt tggtggtttg attagttcga gatatcctat tgcatatata        60
     aaaaggcaaa ataaggtact cggtgtttgt ttcgcgtgtt ttgcgtgcgt ggtgtgcgtg       120
     aacaatgtaa ggacggaatt gacgctttag cactaccatt gttctcttaa caaaagaccg       180
     tgcataaaaa aagtgtggac aaaattggcg ctcatacacc agccttgttc ttttgacgtg       240
     atgatgtgtg tgtgaataat gtgtggtcgg aataaaaaaa aaggggagag cctcgagcgg       300
     ttcggtttgt atcatgatac gaatagccaa ttttgataca aaaaaagcga gaacctcgag       360
     cggattgcgc atgtgtatga taaaatgaga gcctcgagcg gttcagttta tattgtaata       420
     caaaaaaaaa aaaaccaatt gcgtgtatat taaaaaaaag cgagaacctc gagcggttcg       480
     cacgtatata tacatattat aaaaaaaaaa aagagaacga gaacctcgag cggtttgaac       540
     gtgtgtatga aataaaaatg agagcctcga gcggctcagt ttatattgaa atacaaataa       600
     ccaattgcga gtataaatat atatatatat atataataaa aaaagcgaga acctcgagcg       660
     gttcgcacgt gtatatatat attaaaaaaa ggggaacctt gagcggtcca aacgaattta       720
     acatagtaac ataacaaaaa aaactagctg gtatgcaaaa aaaaaaaaaa aaaaaaaaaa       780
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa acggtgattc gagtaagggg gggggcgact       840
     caacacgtat tcgaagaaac cttaccgcac gcgtgcgatc gtgatacaca cacattgaac       900
     gctattaaaa caaaaagggg tacaggaaac tgacatgaac tattctattg ttgtcttttc       960
     gttagcgaca gtgaaataac aaaagcgaac gttgacgctt tgattcgggc tttggagaaa      1020
     gaaaagcaga agaactcctt tttagaatca ctgttaaagg atggttgcgc gagttcaacg      1080
     aaacgacgaa atgactggat cgaggaacct tccgacaacc aattgttcga agctactcct      1140
     cgtggatgtt ctacatttct tgattctgga acacaatcca ccaacgaggc ttccatgtcg      1200
     gcgtccatgt ctttcgccac attgcaaata gccgtttgcc aaccgaaaga cggaaaagaa      1260
     gaagtggaca agacgacatt cgatagatgg agagagttat ttgaagcggc aatggagttt      1320
     gcgggaatta ccagtgaaac tctaaaaatg aatgccttta aaatgaaggc aggcccttca      1380
     ctgttgggca ttctagaaag tacgtcgaca aatgattcag ccaaggatgc gaaactattt      1440
     ccatacacta acacaatgga tcgattagat cactatttta attcccatta ttacgtgttt      1500
     cgtcagcgtc aaaaattacg cacgatgaac caaatcaaag gtgaatcgga ctaccaattc      1560
     gtaaaacgag tgatcgaatc tgggaaatta tgtaattaca aggaggaaca attaatcgaa      1620
     acaattgtcg acgtgataca ggtgcatgct attaacccca aagtacgtat ggcaggatgg      1680
     aaaattctca aaaaacgcgg aacaataaca gatctactgg aaaaagttcg aacatgcgaa      1740
     atagagaaat ttaacgaaaa cgctttcgct agagaccaca gacaaaatga aactacatta      1800
     gaggtttccg ctgtgtcgca taacaccaac gcaaaaatgt cacgcactag ggagtttcaa      1860
     cgtgattatc cctcatacaa acaaaaacat tggggtatgc aggagaatag aggctttagc      1920
     aaaggcgaat tttcaaaatt ctccacaaat cgttcattcg gtattcgtcg catcctgtgt      1980
     tggagatgta gcagcaatac acaccagcca gaaaattgct acgcaataga taaaagatgc      2040
     cgccgctgca atgtcatagg acatatagaa cgtgcgtgcc atcctgatct cttaaacaat      2100
     agcaagcgct atccgacaga tgttgtcgaa ccggctgtac ctaataaaat tcggaaaatt      2160
     gctgctatta cggaaagcgg tattcctgga aagttggatc acgagcaaac agccgtaagt      2220
     gaggcttttc caaccgaatc tgagtagaaa tctacttatt tttgtttact cttttactcc      2280
     atttattttt tttatgtaat acatcaatat acactttcct aaattggcga tgaaatttag      2340
     aatgaatttc aataaaccta cttgctttaa tgaatagatg aacaaattcc ttgaattcaa      2400
     atataatatg caagttgtgg cgttaaaaaa aaaaaaaaat taaaataaaa caaaaaaaaa      2460
     atttaaaatg catgtatcta ttgggatatg atcgggtata caaacataaa gtaaaacgta      2520
     tgcaggaata aatattctta gacatagata gcttcgattc gatcataatt taccatcatt      2580
     tgtttaacga attctatata ataaattttt atatttacgt tttaggatgt atcgcaacaa      2640
     gtgcttcaaa ataattccat cgagatcaat aatttcgtga gggaaaacaa atccttgcat      2700
     agcatttgcc aagaaaaaat cgatctcgtg ttcattacag gttacgtagc gggcctcgct      2760
     attaaattta tgattgattc gggtgcggat gttaacacta tagggaaaga tagtttcgat      2820
     tgtctatcaa aggaagaccc taagttgtct catattttca atttaaagaa agggtctgat      2880
     caccatttaa aagcatacgg aatggaagaa gacattccgg taatagcttc cttcgtagct      2940
     gaattattta tatctaacga ccgccctcga acgatggaaa aattctacgt cgtgcctaac      3000
     gaaaaagcat tattaagtag aaacacagca ttgcgataca gcgtcttaca gctgggcttg      3060
     aacgttccag ttaaatcata ttcgggatat aacacaatcc gattattacc cggagagatt      3120
     ttcgtattga cagatttgat cgaattccct aaatttaatg ttgctcctgt aatgttatca      3180
     tacgataaag aaatgccacc atcccgaaac gtgttcacca gtattccacc agcgtttaaa      3240
     aacgaaacgt tgaaaagatt ggacgacctt ctaactacgg gcatcataga acgcgttacg      3300
     gacaaaatgg aaaattcatt ctgctcatct ttgttggtgg ttccaaaagg taaaaacgac      3360
     atccgtttgg tcgtagacct aagaggtcct aataaaagaa tcatcagaac accatttcga      3420
     atgccaacat tggaggcgat tttatcagaa ttaaatggtg cctcatggtt ttccacgatc      3480
     gacctgtcga gtgctttttt ccacgtggaa ttacaccaag actgtagaca cctgacaaat      3540
     tttttcgctg gaaatggtac attcagattc aagagactgc cattcggtct gtgcaacgcc      3600
     cccgacattt ttcaagaaat tctacaaacg aaaatattag caggatgtcc aggtgtcgtg      3660
     aattatttag acgatatttt agtttttggt agctcgaagg aagagcacga tagtaattta      3720
     aaaattaccc tccaaagact gcgagaacat aacgtccggt taaactccac caaatgcgtg      3780
     ttcggatcgc aatcggtaaa atttttaggg ttcaatttat ctggagacgg atggcgagtt      3840
     gaagacgata aaaggaaagc agtggaaaat tttcgaagac cggagtcgtt gtccgaggta      3900
     aaaagttttt tgggcttggt taacttcacc gagcgcttta tccacaaacg tgccgaaaag      3960
     actacaaacc ttagagcact cgcaaagtca gacaccttct actggacaac gcaggaggaa      4020
     caagaattcg aatacttaaa gacaagagca ttaaactcta ttgtcaggct cggatatttt      4080
     gaccataaag atcgtacgga actatacgtc gatgcgtctc cgaccgggtt aggtgcagtt      4140
     ctcgtacaat acaacgaaga aggaagtccg cgtgtaatat cgtgtgcgtc taagtccctt      4200
     acccaatcgg aacaaaagta tcctcaaaca caaaaagaag cactggcgat cgtttggagt      4260
     gttgagcgat tttcatatta cctgataaac aaatatttca aagtaaggac tgattcagaa      4320
     gccaacgaat ttatttttgg cgggtctcat cgcactggta gacgagctat gacaagggca      4380
     gaagcatggg ccttacgttt actaccgtat catttcggca tcgaaagagt tcctggtaat      4440
     atgaatgtcg ccgatgtttt atcccgacta atttgcaagt cacaggttga cgatgctttc      4500
     gacgaggaca acgaaaagca catattgcat tccttggatg cgggagacat gtctatttcg      4560
     tggacggaaa tacagacagc ctcggagaca gacgaagaac tggaagcagt aaggttagga      4620
     gttcaaaccg gaaaatggtc caatgctctt aaacgttatg aatccgaatc aaaacatcta      4680
     agaacgcttg gtcacattgt ttataaagac gatctaataa ttctacctac atctcttcgt      4740
     tccagagcaa ttaaagcagc tcatcggggt cacgttggtt gcgaagctac caaacgaatt      4800
     ttacgggagt ttttctggtg gccgaatatg gcaaaacaag cagctctatt cgtatctaat      4860
     tgcgaaatat gcctggttat atctaaaagg aatcctccta tacctctttc cagtagacaa      4920
     cttccagatg gaccatggga aattttacaa attgactttt tgtccttaca tggctacgga      4980
     tccggtgaat ttctcttaac cgtagacacc tactcccgtt atttacatgt ttctgaaatg      5040
     aaacaaactg atgccagaag tactaatgct gccctttgta gagtattttc agtttggggg      5100
     ctacctctca tcatacagag cgacaacgga cctcctttcc agggatcaga attcatcgaa      5160
     tattgggaaa gtaaaggagt gaaagtccgg aaatcgatcc ctttaagcgc gcaatccaac      5220
     ggagccatcg aaaggcaaaa ccaaggagtt attaaagcct tggcagcggc aaaacaagaa      5280
     ggtaggccct ggagaatggc gttagacgag tacatccacg ctcacaacac acggaagcac      5340
     cattcacggt taggagtgac gccgtttgag ctgttagtcg gttggcgata tagaggaaca      5400
     tttccgtgtt tatggaactg gaaaaacaaa ttagacagaa atacggtccg agaaaatgat      5460
     gcgttttcaa aactggttag caagcagttt gctgatagtc gtcgaggagc gaaggaaagt      5520
     aacataatgg taggcgatat cgtattgact actgttttac aaagatctaa gacagatcct      5580
     actttttcga aggagaggtt cacagtttta gcaagggagg gagcaaaaat cgttttaatt      5640
     aatgggaaag gtgagaagtt aactagaaac atacaagatg taaaaagggt ccccaatggg      5700
     gcaacagaac aatcaattga ggaggaatta gtagatccaa ttgaaactac agaaatcgat      5760
     tatagcgaga gtgatcattt aaaaagaccc aaaagaatca tacaagtccc taagaaatac      5820
     aaagactcaa ttatgtatca tatttgctac caagagtagg ggtgatggaa ga              5872
//
ID   Gypsy-23_AnMe-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-408
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6860-6860 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 408 BP; 163 A; 46 C; 134 G; 65 T; 0 other;
     tgtagggatc aagagtgaga gagagaagtt tagcgaaatc agagagagcg aaaatattga        60
     aacatgcaaa aatgaggatg agagaggaga gattggacga aagcagagat agagatggag       120
     aaggcgcgtg gaaaaggaga cggacgtcta ccggtagtta gcggtagctg ggatcaagag       180
     agagtgaact ccgagagtga atcgagagag agagagtgtg agagagggat agatcgtgag       240
     atcagggaga gaagacaagt caggcgacag ggagaaataa aggagcctcg ggtcagtctt       300
     gtggttgatc gcaaagagat cggttgagcg tgaaacaaca acaacaaaaa aaaagaaatt       360
     gaataaaaaa agcctgataa ataattaaaa tgtgtgacga ttacgaca                    408
//
ID   Gypsy-23_CQ-I repbase;    DNA;    INV; 4313 BP.
XX
AC   AAWU01011157;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_CQ_;
KW   Gypsy-23_CQ-LTR; Gypsy-23_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4313
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 425-425 (2011).
XX
DR   GenBank; AAWU01011157; Positions   21236   16924.
XX
CC   Positions [3414-3893] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1476..4301
FT                 /product="Gypsy-23_CQ-I_1p"
FT                 /translation="MKPGIKTIIEENKIKIFRTPIFKTEKPGNEDSKIKKP
FT                 LDPLILENIGNVRDDQLAKFQNVYQLNYSEFKRPLTQEIKYEMKITLKTGT
FT                 PFHYKPRRLSHSEKEKVNTKIDELLKSGIIKESNSPFASPIVLIPKKDGDI
FT                 RMCVDYRKLNKDTLRDNYPLPLIEDLLELLRNKKLFSILDLKSGFHQIKIE
FT                 PESTKYTSFVTPNGQYEYKCVPFGLCNAPAVFQRYVNKIFKPLIDAGKLCV
FT                 YIDDILIFSETYEDHLTTLEKVFQILSKNLLELNISKCKFFQNEIDYLGYT
FT                 INSKGRRPNKSHIEAVSNFPEPKNIKDVQRFLGLTSYFRKFIQGFATIARP
FT                 LYDLLKKNSQFKFDDVEKEAFEKLKNKLITAPILAIYNPKAETQLHCDASS
FT                 YGFGAILLQKQNDNNFHPISFFSKKTDEFEKKLHSFELETLAVVYAVKRFH
FT                 VYLSGIEFKILTDCNALAQTLEKKEINPKIGRWALFLDKYHKTIDYRSGHR
FT                 MQHVDALSRQNMSEGEDQNKINQMICVLNIQDIEQNIILAQEQDEKIKNIK
FT                 RHLEINTFPGFELQNGILFRKHEQIRLLVIPKAMIDNILRICHDQNGHIGV
FT                 EKTMIEIKKHYWFSNMKKIVKKYILNCLSCIFYSPLDGKKEGFLKSIDKGN
FT                 EPFNTIHMDHYGPIKLGSSSNYKYILVIIDGFTKFVKFYATKTTNTDEVIK
FT                 CLQLYMNYYSKPMRIITDRGTCFTSRKFENFLECHCVEHIKTASYTPEANG
FT                 QAERVNRTLTPMLAKLIHDSNSKWDTLLTKIEYIYNNTFNRSIKNFPSMLL
FT                 FGKKQANMSLNQNNIETFINNYQEIFSKENLETIREKANRNIENLQNYSKS
FT                 SVDKKRKNITMYKEGDFIVLKKIATHKLAEKFQGPYVIKKVLPNDRFLITD
FT                 IEGFQVSSLPFESVCSPNNMKKWLSSDYCVDEDIAVSG"
XX
SQ   Sequence 4313 BP; 1613 A; 613 C; 815 G; 1272 T; 0 other;
     gacgtcttta aaagttcaga agtgggatag aagtcatgtt cctgcgaagc tataagccat        60
     cccaagaaga acagtcagag gatatcggag aagaatttcc tcctctgact aatcaagatt       120
     gcggagatca agctgaagtt ggttctggcc ggtcaagaag ttgtgaagaa gtttttgttg       180
     gacaagctac tggttcgtct cgaagtcgga ccgagcaagt tttgtcaaga agcaaagaaa       240
     cggttacgtc tggccaaggt gcaagcgcgc aaggtcaagg catgtctgga agtcaagtta       300
     cgctttcttc tggtcaaggt gcagctagaa gccctggaat ttctgtctct ggcgctgtaa       360
     ttcctgtccc tggcgctcat tttcctgttc cagacgcgag aaactgtaca gtgaagctgg       420
     atgaaatttc aagcattctc ccgtgtttct ccgggaaccc tggggaaaat gtggaccact       480
     tcatcaacag catcaagtac gctaaacgga tatttgcagt taacgaagag gtcatgaagt       540
     tggtgatttt gaagcagctt aaagacagtg cgcaaaagtg gttcatgacg caagagttgc       600
     tgttaaagcc atttgaagaa gttttgaaaa ttttgaaaat cacttttaca tcggtcgaaa       660
     gcaagttcgt ggtgaggaag aaaatggaaa atcgaagatg gatgcccaat gaaaaatttc       720
     tggactaagc caatgacaaa tgcctgcttg ctgcatcgct caaccttgaa gaaatcgagc       780
     tcgttgagta tattattgaa ggaattcaag atgaatcact tcaaaatcaa gcaaggatca       840
     accgttttca aactgttgct ggattggtga gagcgtttgg tttggtgcag ttgaagccgg       900
     tgttcaagcc caagatttgc tacaactgta atcaaccagg acacgttgca gtcaattgtg       960
     gatttttcgc tggtaatcaa aggggacaac aaaaaggggg ggactttgga ccgaagcaat      1020
     ttggaggatc gtcaaatcgc gtgcctagag gacaacctgg aggagcgttt ggaggatcgt      1080
     cagcggtaac aacgtctgga ggaccgtcaa cccgaggacc agcctggatt gcagcagtgg      1140
     aggatgagaa tgatagggct gacttggtag gacagacgga aggatctgat ggactggtag      1200
     atataaaatt caaaaattca ttaaaaactt taaaagcttt gtttgataca ggaagtccgg      1260
     ttagtttagt acgacattca aaagttttag attttgaaat tttgaggttt gaacaaaaca      1320
     aaatttttaa aggattagga ggaaacaaac taaatatttt aggcaaaatt atttcagatg      1380
     tatcttttca acatttttgt ttcagaactg aatttttggt tgttgctgac acggatttgt      1440
     cttcattcga tgcaataatt ggaagagata taattatgaa gcctggaata aaaacgatta      1500
     ttgaagaaaa taagatcaaa atttttagaa cacccatttt caaaactgag aaacctggaa      1560
     acgaagattc aaaaatcaaa aaacctttgg atccattaat tttggaaaat ataggtaatg      1620
     taagggatga tcaattggca aaatttcaaa atgtgtatca attaaattat tcagaattta      1680
     aaagaccatt aactcaggaa attaaatacg aaatgaaaat aacactaaaa actggaacac      1740
     catttcatta caaaccgaga agactttcac actcggaaaa agaaaaagtc aacacaaaaa      1800
     tagatgaact tttgaaatca ggcataatta aagaaagtaa ttctcctttt gcgagtccaa      1860
     tagttctaat tccaaaaaaa gatggtgata taagaatgtg tgtagattac agaaaattaa      1920
     acaaagacac tttgagagat aattatcctt taccattgat tgaagatttg ctggaattgt      1980
     tgaggaacaa gaaattattt tcaattttgg atttgaaatc tggatttcat caaattaaaa      2040
     ttgaacctga aagtacaaaa tatacatcat ttgtaactcc aaatgggcag tatgaatata      2100
     aatgtgttcc atttggatta tgtaatgctc cagcagtttt tcaaagatat gttaacaaaa      2160
     ttttcaaacc tcttatagat gcaggaaaat tatgtgttta tattgatgat attttaatat      2220
     tttcagaaac atatgaagat catttaacaa cattagaaaa agttttccaa attttaagca      2280
     aaaatttatt agaattaaat atatccaaat gtaaattttt ccaaaacgaa attgattatt      2340
     taggatatac aataaactca aaaggtagaa ggccaaataa atcgcacatt gaagccgttt      2400
     ccaattttcc agaaccaaaa aatataaaag atgttcaaag gtttttagga ttaacaagct      2460
     attttagaaa atttattcaa ggatttgcaa cgattgcaag accactttac gatttattaa      2520
     agaaaaattc acaatttaaa tttgatgatg tcgaaaaaga agcatttgaa aaattgaaaa      2580
     ataaactgat aactgcacca attttagcta tttacaaccc aaaagcagaa acacagcttc      2640
     attgtgatgc aagttcttat ggttttgggg caattttatt gcaaaagcaa aatgataata      2700
     atttccatcc tataagtttt ttcagcaaaa aaactgatga atttgagaaa aaattgcaca      2760
     gttttgaatt agaaacatta gctgtagttt atgctgtcaa gagatttcat gtttatttat      2820
     ctggcattga atttaaaatt ttaactgatt gtaatgcttt ggctcaaaca ttagagaaaa      2880
     aagaaattaa tccgaaaatt ggaaggtggg cattattttt agacaaatat cataaaacaa      2940
     ttgattatag aagtggacat agaatgcagc atgtagatgc tttgagcagg caaaatatga      3000
     gtgaaggtga agatcaaaat aaaatcaatc agatgatttg tgtgttaaat attcaagata      3060
     tagaacaaaa tattattttg gcacaagaac aagatgaaaa aattaaaaat atcaagagac      3120
     atttggaaat caatacattt ccaggttttg agttacaaaa tggaatttta tttagaaaac      3180
     atgaacaaat tcgtttgctt gttataccaa aagctatgat tgataatatt ttaagaattt      3240
     gtcatgatca aaatgggcat atcggtgtag aaaaaacaat gattgaaatt aagaaacatt      3300
     attggtttag taatatgaag aaaattgtga aaaagtatat attgaattgt ttatcttgta      3360
     ttttttacag ccctcttgat gggaaaaaag aaggatttct taaaagtatt gacaaaggta      3420
     atgaaccttt caatacaatt cacatggacc attatggacc aataaaatta ggctcgtcta      3480
     gtaattataa atatatttta gtaatcattg atggttttac aaaatttgtt aagttttatg      3540
     caactaaaac gactaatact gatgaagtta ttaaatgttt acagttatac atgaattact      3600
     atagcaaacc aatgagaatt ataactgata gaggaacctg ttttacctcg agaaagtttg      3660
     aaaatttttt agagtgtcat tgtgttgaac atattaaaac tgcatcatac actccagaag      3720
     caaacggaca agcagagcga gtaaatagaa ctttaactcc aatgcttgca aaactcatac      3780
     atgattctaa ttcaaaatgg gatactttgc ttactaaaat tgaatacatt tataacaaca      3840
     cattcaatag aagtatcaaa aattttccaa gtatgcttct ctttgggaaa aaacaagcga      3900
     acatgagttt aaatcaaaat aatattgaaa cgtttataaa taattatcaa gaaatctttt      3960
     ccaaagaaaa tttagaaacc attcgagaaa aggcaaatag aaatatagaa aatcttcaaa      4020
     attacagcaa atcttcagta gacaaaaagc gaaaaaacat aacgatgtac aaagaaggag      4080
     atttcattgt tttgaagaaa attgcaacac ataaattagc agaaaaattt cagggtccat      4140
     atgttataaa aaaagttttg ccaaatgatc gtttccttat aacagatatt gaagggttcc      4200
     aagtttccag tcttccattt gaaagtgtgt gttctccaaa taatatgaaa aaatggcttt      4260
     cttcagatta ttgcgtcgat gaggacatcg ccgtgtcagg atgaccgaaa tgt             4313
//
ID   Gypsy-23_CQ-LTR repbase;    DNA;    INV; 121 BP.
XX
AC   AAWU01011157;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_CQ_;
KW   Gypsy-23_CQ-I; Gypsy-23_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-121
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 426-426 (2011).
XX
DR   GenBank; AAWU01011157; Positions   16923   16803.
XX
SQ   Sequence 121 BP; 41 A; 24 C; 19 G; 37 T; 0 other;
     tgtaatatac tagcttagct aagatttaag tagtccatga cttagcaagc tatgactaag        60
     ctattgaggt cccaacattg taactttagg atcattctca ataaagcctt caacctgaac       120
     a                                                                       121
//
ID   Gypsy-23_DAn-I repbase;    DNA;    INV; 5071 BP.
XX
AC   AAPP01019339;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DAn_;
KW   Gypsy-23_DAn-LTR; Gypsy-23_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5071
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019339; Positions  119701  114631.
XX
CC   Positions [1930-2436] - Reverse transcriptase
CC   Positions [3511-3987] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..1276
FT                 /product="Gypsy-23_DAn-I_2p"
FT                 /translation="MGRKNWIYALRKEELCEVCRELGLAADGTVEIMRALV
FT                 ARWVDETKEDEVMVVARGFEEKFAQRTTPRQRAVSESEKLIQSLAVPEMKT
FT                 MRSMEPQVRKPVPVQVDYAKITRQVREWSFRFDGTGDPLEFVDRVAWSAKT
FT                 YGMDINTIPRAMPELLQGRAQKWFLMNDEEWLTWKEFRRSFEAFFLPKGYF
FT                 EKLADQVKQRKQQRGEPLGALGELMKPLGKTTKEVIDRLVENCMPRMKMFM
FT                 RPYACASLEEVMGLAEEFEELALEEEVFNRQSPAIDRRWPKEELQHKPPEQ
FT                 QSHPGQGWGQRWQPEEHRQMPQQQQPSQQWAGPRQQPPNQQWAANPIQRQP
FT                 NIQRAATPGHVENPAQACNRCGGMGHWASGCRNPRMLFCRMCGAVGVRSTE
FT                 CCQRAGNVQRSQP"
FT   CDS           952..4380
FT                 /product="Gypsy-23_DAn-I_1p"
FT                 /translation="MGAEMAARGASPNATATAAEPAMGRPKATTAEPTMGS
FT                 KPNPKAAEHTAGSDAWTRRKPSTGVQQMRRHGPLGQRVQEPQNVVLQDVRR
FT                 SGGKKHGMLPKSGKRAAIPAIERKAEIARCCLSEIVGGLTGDDQQLAAVIK
FT                 VGGAEVRAMVDTGATASFISEKLAEDPGIAGERKATRRLVKLANGSHIETQ
FT                 MVLLTTVSFGNKKKDLNMIVLPGMGDSAVLGWDFLAEFGTTINCAGHQVTI
FT                 PKRERWSGCLEDRLSIAIAGPSEEWERERDKRFIEEELAAFRNQKGCSNIT
FT                 QHKITMKDDIPIKQRYYPKNPKIQGEINEKVEELLEKGCIEPSNSAYSSPI
FT                 VMVKKKTGQWRMCVDFRQINAKSVKDAYPMPRINFILEQLREAKFFSSLDL
FT                 KDGYWQIPLEEESRKYTAFTVPGKGLYQWKVMPFGLHSASATFQRALDQVI
FT                 GPDMAPHAFAYQDDIIVIGRTREEHMENLREVFRRLKVANLRINTDKCHFF
FT                 REELLYLGHRITSQGIGMDPGKVAAITELEPPTNVKGVRQFIGMASWYRRF
FT                 VPDFAGVAKPLNDLLRKGTKWEWTSKQQEAFEKLKSRLAEDPVLACPDFTK
FT                 KFVLQTDASDYGVGAVLTQDTDEGERVVAYASRTLIGAEKNYSATEKECLA
FT                 IIWAIRQMRPYLEGYQFDVITDHMALKWLNNIESPLGRIARWVFELQQYDY
FT                 VISYRKGKLNVVADALSRQPIVEKLRSATATEDAECVWIGSLKKKLKENPQ
FT                 KYPEYVEEAGLIYRHVPHRAGSEEVASWKLCVPMYMRQQVLKENHDAPTAG
FT                 HLGGRKTIAKVAARYFWPGMQRDVRKYVRKCETCLRYKPSQMQAAGKMLTQ
FT                 VPEEPWATVCADFVGPLPRSKHGNTMLLVMIDRFSKWTEMVPMRKATTETL
FT                 QKAIRERIIARYGVPKVMVTDNGVQFTSRSFKKFLEELGVRHQFTAPYTPQ
FT                 ENPTERANRTVKTMIAQFAGKDQRTWDERWPELMLAVNSSVSDSTGYSPCF
FT                 ITQGREPRMPKAIFDQGAVGTGEAQATPSENAEKLKEVFELVRRNMERAAQ
FT                 EQARHYNLRRREWSPKIGDTVWAKEHHLSKAAEGFAAKLAPKYDGPYTVVN
FT                 FVSPVIAVLRHAGTRKEKRAHLSELKAQAQESAQA"
XX
SQ   Sequence 5071 BP; 1654 A; 1077 C; 1530 G; 810 T; 0 other;
     cctggcgccc aaactacgtg attgcttaag agtctaggag taacacagct tcaggatggg        60
     gaggaaaaat tggatatacg cgcttcgcaa agaggagttg tgcgaagtgt gcagagagct       120
     cggtctcgca gcggatggaa ccgtggagat catgagggca ctggtggcaa gatgggtcga       180
     tgaaacgaag gaggatgaag taatggtggt cgcgcgggga ttcgaggaga agttcgcgca       240
     gaggaccacg ccgaggcaga gagcggtgag cgaatcggag aagctcattc aaagtctggc       300
     agtgccagaa atgaagacca tgaggagcat ggagccacaa gtacggaagc cagtcccggt       360
     gcaggtggat tatgcgaaga taacgaggca agtccgagag tggtcgttcc gatttgacgg       420
     aacaggggat cctctcgaat tcgtggaccg agtagcatgg tctgccaaaa cgtacgggat       480
     ggatataaac actatcccgc gagcgatgcc cgaactactc cagggcagag ctcaaaaatg       540
     gttcctgatg aacgacgagg agtggctcac atggaaggag ttcagaagga gcttcgaggc       600
     ctttttcctg ccaaaaggat atttcgaaaa actggcagac caggtaaagc agcggaagca       660
     acagcgagga gagcctttag gagccttagg agagctaatg aagccgttgg gaaagacgac       720
     aaaggaggtc atcgacaggc tcgtggagaa ctgcatgcca cgcatgaaaa tgttcatgcg       780
     accctacgct tgtgcatcac tcgaggaggt catgggtcta gccgaagagt tcgaggagct       840
     ggctttggaa gaggaggtct tcaatagaca gtccccagcg atagacagaa gatggccgaa       900
     ggaggagttg cagcataaac caccggagca acagagccat ccaggacagg gatgggggca       960
     gagatggcag cccgaggagc atcgccaaat gccacagcaa cagcagccga gccagcaatg      1020
     ggcaggccca aggcaacaac cgccgaacca acaatgggca gcaaacccaa tccaaaggca      1080
     gccgaacata cagcgggcag cgacgcctgg acacgtagaa aacccagcac aggcgtgcaa      1140
     cagatgcgga ggcatgggcc attgggccag cgggtgcagg aaccccagaa tgttgttctg      1200
     caggatgtgc ggcgcagtgg gggtaagaag cacggaatgc tgccaaagag cgggaaacgt      1260
     gcagcgatcc cagccataga gaggaaggcg gagatcgcga ggtgctgcct ctcagagata      1320
     gttggaggat taaccggaga cgatcagcaa ttggcggcgg tcatcaaggt cggaggagca      1380
     gaagtgaggg ccatggtgga caccggggca acggctagtt tcatttcaga gaagctagca      1440
     gaggacccgg gaatcgccgg agaacggaaa gcgacaagaa gattagtgaa gttggccaac      1500
     gggagccaca tagaaactca aatggtactc ctaacaacgg taagctttgg caacaaaaag      1560
     aaggacttga acatgatagt gttgccaggc atgggagaca gcgcggtgct tggatgggat      1620
     ttcctcgcag aattcggcac aacaatcaac tgcgcaggcc accaagtcac gatcccgaaa      1680
     agagagagat ggagcggatg tctggaggat aggctgtcca tagccatagc gggaccctcg      1740
     gaggaatggg agcgcgagcg ggacaaaagg ttcatcgaag aagagctggc ggcgttcagg      1800
     aatcagaagg gttgttcaaa cataacccag cataaaatca cgatgaagga cgacatccca      1860
     attaaacaaa gatactaccc aaagaacccc aaaatacagg gggaaatcaa tgaaaaggtg      1920
     gaagaactgc tggagaaggg atgcatcgaa ccttcaaaca gcgcctacag ctcacccatt      1980
     gtcatggtga agaaaaagac gggtcagtgg aggatgtgcg tagactttcg gcagataaac      2040
     gcaaagtcag tgaaggatgc gtacccgatg ccaaggataa atttcatttt ggagcaattg      2100
     agggaggcaa aatttttcag cagcctcgac ctgaaggacg gctattggca aatcccactt      2160
     gaggaagaga gccggaaata cacggccttc actgtaccag ggaaaggtct gtaccagtgg      2220
     aaggtgatgc cgttcggact acactcggct tcggcaactt ttcaaagggc tttagaccag      2280
     gtcataggcc cggacatggc tccccacgca ttcgcgtacc aggacgatat aatagtgatt      2340
     gggcgcacga gggaggagca catggaaaat ttaagggaag ttttccgaag actgaaggtg      2400
     gcaaacttaa ggataaacac agataagtgc catttcttca gggaagagct gttgtacctg      2460
     ggccaccgga taacgagtca aggaattggt atggatccgg ggaaagttgc agcgatcacg      2520
     gaattggaac caccgacaaa cgtgaaagga gtacggcagt tcatagggat ggcgtcgtgg      2580
     tatcgacggt tcgttcccga tttcgctggg gtcgcgaaac ctttgaacga tctcctgcga      2640
     aagggaacaa agtgggaatg gacttcgaaa caacaagaag cgttcgagaa gctaaagtca      2700
     cgtttagcag aggacccggt gctggcatgc ccagacttca cgaagaagtt tgtactgcaa      2760
     acggacgcca gcgattacgg cgtaggcgca gtgctgacgc aggacacgga tgagggcgag      2820
     cgagtggtcg cttacgccag ccgaacgcta ataggcgcgg agaaaaatta ctcggcaaca      2880
     gagaaagagt gtctcgcgat aatatgggca attcggcaga tgaggccata tctggagggg      2940
     taccagttcg acgtgataac ggatcacatg gcgctgaagt ggttaaacaa catagagagc      3000
     ccacttggaa ggatcgcgag atgggtcttc gagctgcagc aatacgatta cgtaatcagc      3060
     tacaggaaag gcaagctgaa cgtagtcgcg gatgcacttt cccgccagcc gatcgtggag      3120
     aagctgagga gtgccacagc aaccgaagac gcggaatgcg tttggatagg ctcgctgaag      3180
     aagaaactaa aggaaaaccc acagaagtat ccggaatacg tcgaggaggc aggcctgatt      3240
     taccgacatg ttccacacag agccggaagc gaggaagtgg catcgtggaa attatgtgtg      3300
     ccaatgtaca tgaggcaaca ggtgctgaag gagaaccacg acgcaccaac agcaggacat      3360
     ttaggcggaa gaaaaacaat tgcgaaggta gcagcaaggt acttctggcc agggatgcag      3420
     agggacgtga ggaaatacgt caggaaatgc gagacatgcc tgcgctataa accgagccag      3480
     atgcaggccg cggggaagat gttaacacag gtcccagagg agccatgggc gacggtgtgt      3540
     gcagacttcg tgggaccgtt gccgaggtcc aagcacggga acaccatgct actagtgatg      3600
     atcgaccggt tctcaaaatg gacagaaatg gtcccaatgc gaaaagccac cacagagacg      3660
     ctgcagaagg caattcgcga aaggatcatc gctagatacg gggtgccgaa agtgatggtg      3720
     acggacaatg gtgttcaatt caccagtagg agcttcaaga aattcctcga ggaactcgga      3780
     gttcgtcatc agttcaccgc accatacact ccgcaggaaa acccgacgga aagggcaaac      3840
     aggacggtga agacgatgat cgcacagttt gcaggaaaag accaaaggac gtgggacgag      3900
     cgctggccag aactgatgct ggcggtgaac tcgagcgtgt cggactccac ggggtactct      3960
     ccgtgcttca tcacccaagg cagagagcca agaatgccga aagcaatttt cgaccaaggg      4020
     gcagtgggga caggagaagc ccaagccact ccctcagaaa atgcggaaaa attaaaagaa      4080
     gtgttcgagc tggtgcggag aaacatggag cgcgcggcgc aggagcaagc tcggcactac      4140
     aatctgagga ggcgggagtg gagcccgaag atcggcgaca cagtgtgggc aaaagaacat      4200
     catctatcca aggcggccga aggattcgcg gcaaagttag cgccgaaata cgacgggccg      4260
     tacacggtgg tgaactttgt gtcgccagtg attgctgtgc tacggcacgc tggcacaagg      4320
     aaggaaaaga gggcccacct gagtgagctg aaagcccagg cgcaggagtc ggcgcaggca      4380
     taaactacag aagcccaaaa aaaaaaaaac acacaaaaaa aaaaaaacaa aacaaaataa      4440
     tatatttaaa ataagaaaaa aaatatttga aaaaatgaaa aaaaatacaa aaaaaaaaaa      4500
     aacaaacaaa aaaaaatata tttaaaatat ttaaaatacg aaaaaatatt ataaaaaaaa      4560
     aagaaaaaga agaagaaaaa aaatgaaaag aaaaatacaa gaaaaaaaaa aagaaaagaa      4620
     gtattattat gaaaaaatat acaaaaacca tatatatata caacaacata gaatgactct      4680
     gacgtcatcc gaagaagggg ggaggtggat aagggtatcc acacaaaaaa atatccacac      4740
     gcaaaggaaa aaaaaaatca aaaacaaaaa aaattatatt gcaaaaacaa acatgaagct      4800
     ggaaccacga agcttctgtc gttcccgaag aaggggggaa gtgtgaggag attagatctc      4860
     ccacacgcca ggacaggtag caagaggggc agcagcgggg gggggaacaa gaaagtcagc      4920
     cctgcagcgg cggatgggcc agcgctgctg tgtttagaaa tacggaagaa gagaaaggta      4980
     tcaaggacag acggcatgcg gggggcagca gcggggccaa gaggaattcg cacggcgtcg      5040
     cgcacgaaag taggaggagg aggaatcacc g                                     5071
//
ID   Gypsy-23_DAn-LTR repbase;    DNA;    INV; 1767 BP.
XX
AC   AAPP01019339;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DAn_;
KW   Gypsy-23_DAn-LTR; Gypsy-23_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1767
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019339; Positions  114630  112864.
XX
SQ   Sequence 1767 BP; 461 A; 430 C; 601 G; 275 T; 0 other;
     tggaaagtaa cggtcccggc cgggcctccg cggtcgcgcc cgaaggtcat aggaagcagc        60
     ggggacggcg gggaaagaag cggccggcga ttgcgcagct gtgtttagaa aatgcacaaa       120
     acacagaaat gcatttggga tgtccagggg gggatcgcgg ggcatcggga cgaagtccga       180
     tgaccggcac aaaaatattg cggatcggtg gcccgagcgg ggccatcggg ggagggtcaa       240
     caaagaaagc ccgccgatag aaagacggcg ggattggaga aagctaacgg agaaagtgaa       300
     ggagcggagg attaacggca ggaagtagat tcgcaaggat taacgggcgc ctctggcact       360
     atataaggag ggcccttgga gcgaatcggg gccgagtctt ctagggaagc tgggagagtg       420
     aatgaaagac cccccgtggg taagtctgga attcaagttg gaaagcttcc ttgaagagtt       480
     aggagtacag gctgaaggac cccccgtggg taagtccgac agtccttagt gcgggctatt       540
     aaagcgagtg agcgaggata ttcgagaata gcttaaggac cccctgtggg taagtccggc       600
     ggcggtacgc gcatcgaatc gagcaaggag tcaggggaaa aggatcaagg atccgcggca       660
     aagctgaggc ccagggtaaa agagtcgggt ggagttattc ccggacacga caggtatcct       720
     ggtgtagtgg cggcaacaac ggatcagcct ggcgtacgcc ttgtctgctc ctgaccgttc       780
     gatccaggtg tgatcctgta acgcgaggga tagccaaccc gggaactcaa gcccatttgt       840
     gaaaccagac agggacaccc cgggaagtca agagaatcct gatccaggcg ctggagcgta       900
     tgcacagcaa accacctgga gtcaaaggag acgcgacgcc caaacctctg gcctaccata       960
     gatcctgcgg ggcgtatgca cgcaggtgtt tggaggcgag tggcgaacgc gaccgggggc      1020
     gtgtcctgta gggtaggaag gcccttcgtg ccctgatccg gccgctaagc agcgaggagc      1080
     atatcctgcc cggcgtatgc ctgggaggtg agccactcgg tctgttaaca cggattaggt      1140
     gccggccacg gcgaaagggc gagtccaggc aagccaaggg ttccgagatc cacggcatcc      1200
     ccaaacggag gaacagcagc agaagagcag cgacgacgag ggagcagcgg cagcggcata      1260
     gcagcgacga cgagggagca gcggtagcag catagcagca acgacgaggg agcagcggca      1320
     accgtagcgc agcgacgacg agggagcagc agcgacggac aggcagcggc agcagaagac      1380
     atcaacaaca caggccccgc aaccagagtc cgtgagtccg aacgaaagga accgagagcc      1440
     gtttcggcgc caggcaccaa gaccgcacga cctgccgggc gcaagctttg ggagggcgtg      1500
     cgtattggca ccaacccgga gcggggatcg gggatcgacg ggaggacgag cggtcggtcg      1560
     gctgagccag acagccggtg agattccttt tattgctttg taaactattt acaataaagg      1620
     ggatttattt ataaagaagc tttaacgtgt tatttctggg ctcgggcaat cacgtcgaac      1680
     tataaattcg gtggaacgta ccctcaaact ctgtgagcta gccgcggcat ttgttgcgag      1740
     caaaacatag aaaaacagtt cgttaca                                          1767
//
ID   Gypsy-23_DAzt-I repbase;    DNA;    INV; 4268 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4268
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 803-803 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..4249
FT                 /product="Gypsy-23_DAzt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MDTTNIKELLAQQQQFAEELIKKQQTWMEAFLAENSA
FT                 VNRPAESTVCPPFPSFNKDQQNWETYLQQLAQHFAAYSVIAVDKKKAYFLS
FT                 WVGTHVFELVKNLFGSENLDQQSYVQITDKLTEHFKQKRHIVAARYEFFKR
FT                 QMRDSQSHKEWVADLRGIARECQFSCNANGCTYNYVDEMIRDQIIVHTPFE
FT                 AIRTAALQKLQPSLADVLSIAETYEATSKTVAVIKESEKRTLDMNAVHTHK
FT                 KHQQKRSGMEAKGGKNSLKSCSGCGNTHARENCKFRDAICHKCGRKGHIAI
FT                 VCMSKQCKDMKERDNHKYQHKEKHAESIQTLHTVSSLVKFEGNKNVINLEI
FT                 FNEIIPFQMDSGATVSIINSKTYKELKSPKLQKCDRILQAFGQQQIPVLGE
FT                 LHTVAKCGNKSANVVIIVANVENSNNLFGMDLFKTFNFEIQQISNVSEAQG
FT                 SKLTDLCNKYKGVFEPAIGTIRNFKASIYLKQNFVPKFYKSRQIPFAQMEQ
FT                 FKEEVKRLTDAGILKAVKFSNWASPIVLAPKPGGALRICGDFKQGVNSQLD
FT                 IEQYPLPTRESLLHTIRHGTHFSKIDLKDAYLQMELDDAAKEIMVVNTPLG
FT                 LFQYQRLPYGIASAPAIFQRHLEQLLSGIEGCGNYLDDIIISAPTVEQHLA
FT                 RLEQVLCILKENGIKCKREKCFFLRNEIEYLGRRVSMKGILPDTTGLEAVK
FT                 QLKPPTNLQQLDAFMGKVNYYCNFIPNFSQLASPLNQLRRKNVVFKFGPEQ
FT                 QQAFTALKTHILNATELAHFNEHLPLVLATDASSYGIGVVLSHIQADGKER
FT                 PIAFASKTLDVHQVRYSQIEKEALSIIFGVKKFHQYLYGRKFILITDHKPL
FT                 VTIFNPNKHLPTMTSNRLQRWAIILMAYNFEIKYRSTTAHGNADALSRLPI
FT                 SSDEKFDTEEACYNVVEMSCPINADIIRHKLNSDRILHKVYQFVSTGWPEQ
FT                 QHDLEILPYFNRRFALTINNNLLCLHSNVNRIIIPGALRNNILNLLHEGHW
FT                 GIVRMKQLARQHVWWPGIDEEIATIAKNCSVCKIANPAPLKQFESWPKATS
FT                 AWERIHIDFAGPIFDSMWLICVDAHSQFPFVVQMTSTTTGNTIAALSAIFA
FT                 IEGYPKTLVSDNGPQLTSDSFNQFCQQHGINHITTAPFHPASNGLAERFVQ
FT                 TFKTSVSKNIKDGYQVNTAVTKYLSSYRFTPNSEGKTPAELLHGRPVRTIL
FT                 SQLFEKRTESKQKQPAKYSPNQTVFAKNYARGEKWIKAIIDRPIGRMLFIL
FT                 RTSTGFIKRHINQIKPRSEPDDCTSSSNDDNNQIWWTPEFSSPPTNPTTPA
FT                 QEEEPSSNPIQNSQSISGFNEDPGSSQQEVLQPPQQRRSGIPIRSSTRERR
FT                 ATSRYSPQDHRKKKITNKP"
XX
SQ   Sequence 4268 BP; 1415 A; 977 C; 859 G; 1017 T; 0 other;
     tattggcgac gagtgaaaaa agtgcctcag aatcatcatt ttgagtattt cgtgtcggta        60
     gtctaaccaa atagagatcg aacgattaaa aaacaaagaa aatatggata caacaaacat       120
     caaagaattg ttggctcaac agcaacaatt cgcagaggaa ttgataaaaa aacaacaaac       180
     atggatggag gcctttctcg cagaaaacag tgcagttaac agacctgcag agtcaacagt       240
     ttgtccgccg ttcccaagtt ttaataagga tcaacaaaat tgggagacgt atttacaaca       300
     attggcgcag catttcgcag cgtactccgt tatcgctgtc gacaagaaaa aagcatattt       360
     tctgtcgtgg gtaggcacac atgttttcga acttgtcaag aatctcttcg gtagcgaaaa       420
     tttggaccag cagtcgtacg tgcaaatcac agacaaatta acagagcact tcaaacagaa       480
     gcgtcacatt gttgctgctc gctatgaatt ttttaaacgt cagatgcggg actcacaatc       540
     tcataaggaa tgggtagccg atctacgtgg tattgctcgt gagtgtcagt tttcttgcaa       600
     cgcaaatggg tgtacataca attatgttga cgaaatgata cgcgatcaaa taattgtaca       660
     cacgccattc gaagcaatac gcacagccgc attgcaaaag cttcaaccgt ccctcgcaga       720
     cgtgctctca attgccgaaa catacgaagc aacatcaaaa acagtagcag tcataaagga       780
     gagcgagaag agaacactgg acatgaacgc tgtacacaca cataagaaac atcaacagaa       840
     acgcagtggt atggaagcaa agggaggcaa gaactctctt aaatcttgct ccggttgtgg       900
     aaatacacat gctcgtgaaa actgtaaatt tcgcgatgct atttgccata aatgtggtcg       960
     aaagggacac atagctatcg tttgcatgtc aaagcagtgc aaagatatga aagagagaga      1020
     taatcacaaa taccagcata aagagaaaca cgcagaatca attcaaacac ttcacaccgt      1080
     ctcaagccta gtgaagttcg agggaaataa aaatgtaatc aacctggaaa tcttcaacga      1140
     aattattcct tttcaaatgg attctggcgc aacggtatca attatcaata gtaaaacata      1200
     caaagaactc aaaagtccaa agctgcagaa gtgtgaccgt atattgcaag cgtttggcca      1260
     acaacaaatc cccgtgctgg gtgaactgca cactgtggca aagtgtggca ataaatcggc      1320
     aaatgttgtc ataatcgtgg caaatgtaga aaactcaaac aatctgttcg gaatggattt      1380
     gttcaagaca ttcaatttcg aaattcaaca aatttcaaat gtgagtgagg cgcagggttc      1440
     taaattgact gatctttgta acaagtacaa gggagtattc gaaccggcta ttggtacaat      1500
     aagaaacttt aaggcaagca tctacttaaa gcaaaatttt gtgccaaaat tctacaaaag      1560
     cagacaaatt ccatttgctc aaatggaaca gtttaaggag gaagtaaagc gtctcacaga      1620
     tgccggtatt ttgaaggcag tcaagttcag caactgggca tcgcccatag tactagcacc      1680
     caagccaggt ggagcactac ggatctgtgg cgactttaaa caaggtgtca attcccaatt      1740
     ggacatcgaa caatatccgc tgccaacacg tgagtcttta ttacatacaa tccgtcacgg      1800
     cactcatttc tccaaaatcg atctgaaaga cgcatatcta caaatggagt tagatgatgc      1860
     agcaaaagaa attatggtcg tcaacacgcc gttgggcctt ttccagtacc aacgtctacc      1920
     atatggaata gcgagcgccc cagctatatt ccaacgtcat ttggaacaac ttctcagtgg      1980
     catagaaggt tgtggaaatt atttagacga catcatcatt tcagctccaa cagttgaaca      2040
     gcaccttgct cgcctcgaac aagttttatg cattctaaaa gagaatggca tcaaatgcaa      2100
     gagggagaag tgtttctttt tgagaaacga aattgaatat ctcggcagaa gagtaagcat      2160
     gaagggcatc ctcccggata ccacgggtct agaggctgta aaacaattaa agcctcccac      2220
     taatctacag cagctggatg ctttcatggg aaaagtcaac tactactgca atttcatccc      2280
     caacttttct cagctagcgt ctccgctcaa tcagcttcgg aggaaaaacg tagtcttcaa      2340
     attcggaccc gaacagcagc aggctttcac agcattaaaa acgcacattc tcaatgctac      2400
     agagctagca catttcaacg agcatctacc gcttgttcta gccaccgatg catcttcata      2460
     tggcattggt gtagtcttgt cacacattca agcagatggc aaggaaaggc caatagcatt      2520
     tgcatcaaaa acattagatg tccatcaagt tcgatacagc caaatagaaa aggaagcact      2580
     ttcgattata tttggggtaa agaaatttca tcagtacctt tacggcagga agttcattct      2640
     cattactgat cataagccat tggtcaccat attcaatcca aacaagcatc ttccaacaat      2700
     gacttctaac agacttcagc gttgggctat aattttgatg gcctacaact ttgaaattaa      2760
     atatcgcagc accacagctc atggaaatgc agacgcactc tcacgtcttc ctatcagctc      2820
     agatgaaaag tttgacacgg aagaggcatg ctacaatgtc gttgagatgt catgtcccat      2880
     aaatgccgac ataatcaggc acaagctaaa cagcgaccgt attctgcaca aggtctatca      2940
     atttgtatct actggttggc cagaacaaca gcatgatctc gagatattgc catattttaa      3000
     tcgtagattt gccctgacga ttaacaacaa cctactatgt ctccattcta atgtgaatag      3060
     aatcattatt ccgggagcac tacggaataa tattctcaat ctcctccacg agggtcattg      3120
     gggaatagta cgaatgaaac aactggctcg acaacatgtg tggtggccag gtatcgatga      3180
     ggagatcgct acaattgcaa agaattgtag cgtgtgcaag atagcaaatc cagccccact      3240
     aaagcaattc gagagctggc caaaagcgac atccgcctgg gaaaggatac acatcgactt      3300
     cgccggtcct atatttgact ccatgtggtt aatctgtgtc gatgcacatt ctcagttccc      3360
     gttcgtagta caaatgacat cgacaacaac tggaaacact atagccgcac tttcagccat      3420
     atttgctatt gagggttatc cgaagacttt agtcagcgat aatgggcctc aactcacttc      3480
     agactctttc aaccaatttt gtcagcaaca tggaataaac cacatcacaa cagcaccatt      3540
     ccatccagca tcaaacggac ttgctgagcg tttcgtccaa acattcaaaa cgtccgtcag      3600
     caaaaatata aaggatggat atcaagtcaa cacagccgta acgaaatacc tcagttcgta      3660
     tcgcttcaca cctaattcag aaggcaaaac accagcagaa cttcttcatg gtcgtccggt      3720
     tcgcacgatc ttaagtcaac ttttcgagaa gcgaactgaa agcaagcaga aacagcccgc      3780
     gaaatattct ccgaaccaaa cggtttttgc aaaaaactat gcaaggggag aaaaatggat      3840
     aaaagctatc attgatcggc ccatcggtcg tatgttattt atccttcgta catccacagg      3900
     tttcatcaag cgccacataa accagataaa gccaagatct gagcctgatg actgcacttc      3960
     cagctccaac gacgacaaca atcagatttg gtggacacct gaattctcaa gtccgcctac      4020
     aaatccaaca acaccagccc aagaagaaga accgtcatcg aatccgatcc aaaattctca      4080
     atccatttct gggttcaacg aagacccggg atcatctcag caagaggttc ttcagccacc      4140
     ccagcaacgc cgttcgggta tccccatccg tagcagcact cgcgaacgcc gagcaaccag      4200
     ccgctactct cctcaggatc acaggaagaa gaaaattact aacaaaccgt aatttaaggg      4260
     gagagatg                                                               4268
//
ID   Gypsy-23_DAzt-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-181
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 827-827 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 181 BP; 66 A; 44 C; 21 G; 50 T; 0 other;
     tgttatgtat taaagaaata agaactaagc aatagcaaaa tcagccattt gtactgtata        60
     cacacacaca cactaacact attacacccg aatgtatgta tgccttctct cttcaaataa       120
     agtcagttct aagctagttc tcatcatgaa cacaacgttt cctccgtact cagacacaac       180
     a                                                                       181
//
ID   Gypsy-23_DBp-I repbase;    DNA;    INV; 5476 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5476
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 692-692 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2214..4700
FT                 /product="Gypsy-23_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="YSGGPFFRGRARVRLPYLIRFDKKENKNFKVLIDTGA
FT                 TACYIKKGIYLNKNELPIYKRVSTVNGYSIIKYYHMITIFNIKHIFYEIEG
FT                 LETDLLVGYNLLKKIGAIIDTKKGVIQYHGKEEKLLFHNKVCKENLCHTEE
FT                 KCNHPLNEFLINKYFNQLKQVKSNSVCVETSDYDYSSESERSKDFSSIKSF
FT                 QSKNEGLRSITSQSTSGNKKNKKHCLNNIKLKSENDMEELRNIIINHIKDE
FT                 HSKINMQIPFRTDIRGEINLEHDRPIYGKQYPYAQSVAEFVNKEIKRMLSE
FT                 KIIQPSRSPYNSPVLVVPKKGYNEDGSPKLRLVIDFKKLNENTIPDRYPMQ
FT                 DPSVILANLGKAKFFSTIDLESGFHQILMRESDIQKTSFSINNGKYEFLRM
FT                 PFGLTNAPRIFQRAMDDILRDQVGKTCHVYMDDIIIFSNSVEEHFNDLTRI
FT                 INILLEANMKISLEKSKFFSQETNFLGYVVSYNAIKTDPVKIAAIQNYPIP
FT                 KNIRELRSFLGLTGYYRKFVRNYAYIAKPLTSYLGGHNGKISKNMSKKMSV
FT                 QLDEPAVKAFNELKQNLTNQLELVQPDYSKKFILTTDASNIALGAVLSQEG
FT                 KPITFISKTLNKTEQAYATNKKELLAIVWALKNLRNYLYGVVGMEIHTDHQ
FT                 PLAYSISDKNPNIDMKSWYSFIQSFTPKIQYKPGTTNVVADALSRVQINNL
FT                 SDADISEDSSDENTIHSAESSFENVIEETNKPLNQFKIQLLITTGRLTVHE
FT                 SINVFDNVRHIIEEYDTPENLVTLLKEYISPNITIGLHCTLETYFSKPTRP
FT                 LLIAKTTKRKFRKQIPIYKNFCTRRRK"
XX
SQ   Sequence 5476 BP; 2231 A; 978 C; 829 G; 1430 T; 8 other;
     atgcatgtta tccaactcat aaattgcctc accaaaaagg caatgtaaac attatttgca        60
     aaacgcagta gcccctgctg aatgcgtcat gccatttctt atcttgtctc ctaatttccc       120
     ctcactcgtt tctgatgatc cccaaaagat tatccagact aaacatcaag ctccacttgt       180
     aaacattccc acgaaatttt ccatggccca agccagacat aaacattaga gccgactcgc       240
     cgtcaccagt ccgaattggw tcgatcttcc gatcttatca ctcttcacga atgactcaac       300
     tactgcatca gcaaattgtc cctttctctt agaatctctt agggcaattg tttattctct       360
     ccaagtaccc ttttgggtta tttctcttaa gccgaggttt gttggttatc tggcaattaa       420
     aaattggcag tcttattccg ggagcaagcc tttcacatac aatcggtcta gcctaagcgt       480
     ttaaataaag tttgtgaacc aaataagaaa taataaataa agtttttaaa aataaaaatt       540
     aaaaattaaa aattattttt ttaaaaagtg aacttcggga ttaatttaat tggcgcccaa       600
     cgtggggcca tgcaaataaa ggtgattcta aaaaataatt aattaaaata aaaacaaatt       660
     aattagaagg aaagcaccag cgtggctcaa aaaaactcat ataaatccca atttaatcgc       720
     gttgaacagg caaaccgaag actagtgatt ggcaaagact ccaataaaaa aataaacaaa       780
     atatatacaa atcattaaaa aaccattaaa ataaaaaact cagtgttcaa aaaattaaaa       840
     accgtgttac tgaaaaacaa agcaaaaaat tcaattaaat acaaaagctg attaactgat       900
     ccaacggaag aaggaaggaa gaaacccaac cggacatctg actaaggaga acaggataca       960
     gatagcagga aggaagaaac ccaacaggac atctaactaa ggaggacagg atacaacatc      1020
     accgtgagaa attaaagaaa agcttatcct tagttacaca ttaaatttac tttacattta      1080
     aaaataaaat actaacaaaa attttatttt attaaattaa gtcaaatctc ttgaaaaatt      1140
     aaggaaaaaa cggtagaaga ttataaaatt cagacaattg atccaaatat aagttgtgat      1200
     acaacattag aagtgattaa agctctgcca aaatttaatg gggagcaaac tcagtatgta      1260
     ggctggaggg aggctgcaga gacagcaatg agtttatata aaataaacag tgagcaatat      1320
     tttatagcgt taaccatact tcgtaacaaa atcatgggag cggcacatga tgccctgacc      1380
     aaccatggaa cagttcttaa tttcaatgca attttgtcta gattggattt tatctataat      1440
     gatagaagac caatccacgt tctagaagct gaactaagta ttcttagaca aggtaaattg      1500
     tctattacgg agttctataa cgaggtaaat aaaaagaatg accctactga tcaataagac      1560
     cataatgaca tacggtaaag aaagcgaaat tacaaaagaa actaataaag taattaggag      1620
     caatgctcta agaatcttta tttctggtct aaacggatca atatcagaga cgcttttctc      1680
     gctaaatcca cccgaccttc caaacgcctt agcaaaagtg caagaactag aatcaaataa      1740
     ttttagagcc caattcgcca atagatatta tggctttcaa aatgaaaacc gaaggcaaaa      1800
     taattaccta aggtttaact cggtccaacc aaaacaaaat tttaataaac caaatgggga      1860
     aacggccaaa accaaagttg gccccaacag actaatttcg accagaacaa cgttcaggga      1920
     caacaaaccc cagaaccaat ggaagtcgat ccttccatac agttcgtaaa ccgaccaaaa      1980
     gggcaatcta ataattatcg tcagggatat acccaaaatt ttggcacaaa ccaaaaccaa      2040
     gatcgtccgt attcaggtcg accaaactat tatcaacata attatagccg tccttctaat      2100
     aataatccac aaaactttgc aaatcaagca gctggcccaa gtcattttcc agtaaagcga      2160
     gagcttgaga gtacagtaaa tcaaccacaa aataaaacca tgaaaattaa taatattcag      2220
     gaggaccatt ttttagggga agggcaagag taagattacc ttacttaata cgatttgaca      2280
     aaaaagaaaa taaaaatttt aaagtactaa ttgatacagg cgcaaccgct tgttacatta      2340
     aaaagggaat atatttaaat aaaaatgaac tccctattta taaaagggtt tcaacagtaa      2400
     acggatattc gataataaaa tattatcaca tgataacaat tttcaatatt aaacatatct      2460
     tttatgaaat cgagggttta gaaactgact tgttagtcgg ttataatcta cttaaaaaaa      2520
     ttggggctat aatcgacacc aaaaagggag ttatacaata tcatgggaaa gaggaaaaat      2580
     tactttttca caataaagtg tgtaaagaaa atctatgcca caccgaggaa aaatgtaatc      2640
     accctctgaa cgaattctta ataaacaaat attttaacca gttaaaacaa gttaaatcaa      2700
     attcagtctg cgtcgaaaca agcgactatg actacagctc cgaatcagag cgttcaaagg      2760
     attttagttc aataaaatcc ttccaatcca aaaatgaggg tctaaggtca ataacctcac      2820
     aatctacttc aggcaacaaa aaaaataaaa aacattgcct aaacaacata aaattgaaat      2880
     cagaaaatga tatggaagaa ttaagaaata taataataaa ccatatcaaa gatgagcact      2940
     ctaaaataaa tatgcaaatt cctttccgca ctgatattag aggggaaata aacttagaac      3000
     atgatagacc catatatgga aaacaatacc catatgccca atccgtagca gaatttgtta      3060
     ataaagaaat taaaagaatg ttgtccgaaa aaatcataca acctagcagg agtccgtata      3120
     attctccagt tcttgtagtt ccgaaaaaag gatacaatga agatggcagt ccaaaactaa      3180
     gacttgtcat tgattttaaa aaattaaatg aaaacacaat tcccgataga taccctatgc      3240
     aggatccatc tgttatatta gctaatctgg gaaaagcaaa atttttttcc acaattgacc      3300
     tggaatcagg ttttcatcaa atattaatga gagaatccga cattcaaaaa acgtcttttt      3360
     ctataaataa cggtaaatac gaatttttaa gaatgccttt tggcttaact aacgctccaa      3420
     gaatcttcca acgagcaatg gatgacattt taagagatca ggttggaaaa acttgccacg      3480
     tctatatgga cgatataata attttctcaa attcagtaga ggaacatttt aatgatttaa      3540
     ctagaataat aaatatcctt ttagaagcaa atatgaaaat ttctttagaa aaatccaaat      3600
     ttttttcgca agaaaccaac tttcttggat acgtagtctc ttataatgca atcaaaacag      3660
     acccagttaa aatcgcagca atacaaaatt acccaattcc aaaaaatatc agagagctta      3720
     ggagctttct tggcctaaca ggttattata gaaagtttgt ccgtaattat gcttacatag      3780
     caaaaccact cacctcatat ttaggaggcc ataatggtaa aatatctaaa aatatgtcga      3840
     aaaaaatgtc ggtacagttg gacgaaccag ctgtaaaagc attcaatgaa cttaagcaaa      3900
     accttactaa tcaacttgaa ttagtacaac cagattatag taaaaaattc attcttacaa      3960
     cagacgcttc aaatatagca ttaggagcgg ttctgtcaca agagggtaaa cctataacct      4020
     ttatatcaaa aaccctcaat aaaacagaac aagcatacgc cacaaacaaa aaagaattat      4080
     tagcaattgt ttgggcatta aaaaacctaa gaaactactt atatggcgtg gttggaatgg      4140
     aaattcacac cgatcatcag ccattagcgt attcaatatc tgacaaaaac ccaaatattg      4200
     acatgaaaag ttggtattca ttcatacaaa gttttacacc aaaaattcaa tacaaaccag      4260
     gtacaactaa tgttgtagcg gatgctttat ccagagtcca aataaacaat ttgtcagacg      4320
     cagatatatc agaggatagt tcagatgaaa atacaattca ttctgcagaa agcagctttg      4380
     aaaatgtaat cgaagaaact aataaaccac ttaaccaatt caaaattcaa ctcttaatca      4440
     ctactggcag attaacagtc cacgaatcaa taaatgtctt cgataatgtt agacatatta      4500
     ttgaggaata tgatactcca gagaatttag taacgttact aaaagaatat atttcaccaa      4560
     atataaccat aggcctgcac tgtaccctag agacttactt ttcaaagcct acaagacctt      4620
     tacttattgc aaaaaccact aaaagaaaat ttcggaaaca aattcctatt tacaagaatt      4680
     tttgtacaag acgtagaaaa tgaggaagat aaggcaatta ttattgaaga gactcattgt      4740
     cgcgcccata gagggttaga cgaaaattac aaacaaatat ctagacttta ttattggcca      4800
     aaattattta taaaattaaa agaatatata aaaaattgcg tsatttgtaa ccaaaataaa      4860
     tatgcagaca cccagtagaa attccgattg gtgaagcacc aattccaact agtgaaggtg      4920
     aaaatcttca cattgacata twttacgcgs ataaataaat tttttstatg acgcttactc      4980
     ttaacagtaa agaaatmsaa aataagttaa atattgaaaa aaagtactag aaattctaca      5040
     acattwtcca ttagcaaaaa caattatgac agacaacgaa ccaagtttca gatctgcgca      5100
     atttcgttca tttataagca aaagtggact cacaatacac tttgcagatc caagacatag      5160
     cacttccaat ggtcgaattg aaagggcaca ttctcctgaa ataatcataa gagcacttaa      5220
     acatatgaat cagagcattc actcttacaa cgaaaaacca tttgaatgct atacaataaa      5280
     ataaaccatc aagaaaacac caaacactct tcaaggaagc tcaagcagat atgctggcaa      5340
     cacataacga agacagaaaa caaaaagaat ataatgtagg acaagcagtt tatgaaaaag      5400
     aaacatgggg aaagaaataa acttaaaacc aagatataaa aaacagatag ttaaggaaaa      5460
     ttcgggtaat aaagta                                                      5476
//
ID   Gypsy-23_DEl-I repbase;    DNA;    INV; 6322 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Putative LTR retrotransposon from the Drosophila elegans genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DEl-I.
XX
NM   Gypsy-23_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6322
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 461-461 (2012).
XX
RN   [2]
RP   1-6322
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1616..2791
FT                 /product="Gypsy-23_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MPDERRRPDSRINAGIPGQAPQGAVPKSTQVAGRDGS
FT                 RLPPPRVPPKPTRRPLDFQELESSSPGYPPDHFRSRRDDGPARSWCIEDRR
FT                 ASEFREEPRLYANVGPAAANQQWRIERWGVSFDGEDERNSVEDFLFRLEFL
FT                 QRQCQCPWQEVLRNFHLLLTGRAREWYWVHVRHCRVDRWSQLRASLMDRFR
FT                 CHQTEHDRMHQLLQREQQPGEGVGDYIHAMQQLAARLKRPLSERQLVKIIK
FT                 KGLRESIARFVYAMDVLTVDELREECCEVERSFGRRGRTTYTQPMRYPLAE
FT                 KAKVSEAIGPDPGEDPPWQEVDEVRAKPKNPFRAGCWNCGAVDHGFRDCAA
FT                 TERRLFCYRCGKPDTVSPKCPDCAENGRLGDPRAERMRPDRSSAEKKSW"
FT   CDS           2671..6114
FT                 /product="Gypsy-23_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MWEARHRVSQMSGLCGKRSAGRSEGGEDASRQEFRRE
FT                 EELVGLDKCLPSKNSNKFALRYLPYAERMRRYLETRNRIFSEHQLGGMRVV
FT                 SRKVQKARERFRKRRNCRREAVAAVRRSLSRDPRPFAAVRVLTKQLTGLLD
FT                 TGASVSLLGKGGRELVEALDVPVQKYLSAVRTASGEDRSIIGRVKLPVEYR
FT                 GRTEHILFYLCPYLEQPAYFGVDFWQAFGLAPAIIGHINSEGVKKAEELHA
FT                 REMEHYAEVEDDDEEKPDPESWTLSKAEEQELEEIKQQFLTFERDGLGTTS
FT                 LEKHTIELMDGAKVFKDRPYPMSPAKQKVVEDEVDKMLALGVIEESKSPWS
FT                 NRTTVVSRSGKHRFCLDARKLNDVTIKDAYPLPSIDGILSRIEQTYYISSV
FT                 DLKFAFWQIELDTSSKEYTAFTVPGRPLYQFRVMPFGLCNASQRLVRLMDR
FT                 VIPAEIRSNVFVYLDDLLILAPDIRTHLKYLRRVAECLKEAGLTIGLSKSK
FT                 FCFKSLTYLGFIVGGGRLRMDPGRVAAIRRMPEPRTMKEVRAFLGTAGWYR
FT                 RFIKNFATLAAPLTESLKKTGNKKFSLSPEAQLAVESLKMALTTAPVLVHA
FT                 DFKRHFFIQCDASQIGVGAVLFQRDEDGQEQPIAFFSAKMNRHQVHYTVTE
FT                 KECLAALLAIRKFRPYVEGMPFTCITDHASLKWLMSMKDLSGRLARWSLQL
FT                 QGYDFNIEHRKGSENVVADTLSRCVEELTVDPSELLGFETTEFAGEEYTEL
FT                 LQEVEKNLANLPDLRIVDGLIFKRVFSANLDDEVEGFEWKLWIPQSLTHSI
FT                 IERAHSDPTAAHGGMGKTLENLRRQFYWPGMALQVREFIRRCEVCKETKSP
FT                 NFRMQVGIGERVQTEQPFQKLYIDFLGKYPRSKKGQAYIFIVVDHFSKYTF
FT                 LKAMQEASASNVVEFLIHEVFYKFGVPEIVHSDNGRQFTSKIFEEAMESFG
FT                 ITHIKTPVHSPQSNAAERVNQSVLAAIRSYLEEDHREWDAYLPEIEVALRN
FT                 AVHSATGEAPFFTVFGRHMFLNGASYKLARKLKSLCDHEMSGMRTADKLQV
FT                 IHDKVQKNLEDAYDRSRLRYDKRARTFLAKPGQEVYRRNFVPSDFKKAFNA
FT                 KFARKFLKARVVRTVGNNAYELEDLQGRPIGVYHAKDIRL"
XX
SQ   Sequence 6322 BP; 1593 A; 1434 C; 1851 G; 1443 T; 1 other;
     atatggcgcc caatttaaca aataaaatat gtgatagccg agtcgacggc gtctcgcata        60
     tttattatct ccagccagcc cacgaacggt ggcttgcatg acacacatgc aattgcaccg       120
     ggatgcggac tggtggagaa aagttgttta aattttgtag gaagaaaggg aggcgtgtcc       180
     actagaagta ggacaattgc tcccgaggca cagttcacag ggattagctg tgatttggcg       240
     gtgacatcct cttcgaagaa aatcgaagga ttcgcatccc aggtcgtccg tgcaataagc       300
     acgaaaggtt aaaccaaaaa cggtgataaa actgtgatat aggtattagg gacatatttt       360
     tttttgttaa cgtaatttta atgaatgtct tgttttgggg ttacagtgta gttgtttttt       420
     ttgtgcagat ccttgggttt tctgggtatt tgcgttttca gatcatatcg gtttaaaact       480
     taaatgtgtg gtcgtgaccc gtgacktcgt cacgcgctgc tcggccaccg cgacttgaat       540
     gaaaaacgca aagtccaaaa ggaaatccta tgcgatcctg caaacagccg aagtccttaa       600
     ctggcgactt tcagcacagc tgaaagttag tccagttgac gagcggtttg tttagtgaga       660
     attcggacga aattgtagac gcaagacgac tggcgcggag tctaccggct ggggatcggc       720
     tccatctccc cttattgagg ctggaaaaaa aaaaaaaaat aaaaatagag aaagaaattt       780
     agtcgaggga cttgtttttt tgataagagc taatatttgg tgtgaatttg tttagcctta       840
     ggtatttgtg ggtctttaat atattttctt atttatttct tatctattca tggtttattg       900
     tttctattta tttattatta ttatttattg gcctggtaat ataagtattc gtattattta       960
     ggtgcatatt atttagtggt gtttatttat tgtttattat tatttactag cattcagtat      1020
     aatttattta tttatacata atttgggctt ttggtggcca cgttgaattc ggggtttcag      1080
     aagtcgtgtt aggggttatc aaaattcaag atgtcaaagc gacaaggcag caagcatgat      1140
     cacctgcttc ggtcgaaagg ttttccaggc gaggacgacg aaaagatgtg gtccacggat      1200
     gtggagggcg ctaccgaggc tggcttgccg cgcatatcgg aagggttgcc caggactccg      1260
     cttgcccgtt tgcgccaggg actgcaacaa gagcaaaaag gaccacagga cacagagctg      1320
     cagcaggacc taaggcagca gcagatcctg gagggaattg gttccgcagc ggatgagtta      1380
     ttgcagctgg acgataagga cgcaagactc cacgatccct ttgtggattc cgcggcaagg      1440
     tcggccgtta atgtggcttt ggcacaggcg gcggagaccc atcggaaggc ccaagaaggc      1500
     gggatcaatc aggcactgag ggacgagatc cgaagtggct tcctggagat gatgaagctg      1560
     atgaacgagg tgttaaggcc tgctgctcag cggcctcagc ttccccctgg agagcatgcc      1620
     ggatgagcga aggcgtccgg attcaaggat caacgcggga atccctggtc aagccccgca      1680
     aggtgcggtg ccgaagagca cacaggtcgc cggcagggac ggttccaggc tacctccgcc      1740
     gagggtgcca cccaaaccga cgaggaggcc gctggatttc caggagttgg aaagtagcag      1800
     tcccgggtat cctccggatc atttcaggtc gcgccgagac gatggcccgg cccgcagctg      1860
     gtgcattgag gaccgcaggg cctcagagtt ccgggaggag ccgcgtctgt atgccaatgt      1920
     ggggccggca gccgccaacc agcaatggcg aattgagcgg tggggcgtat ccttcgacgg      1980
     ggaggatgag cgaaactcgg tggaagattt tctcttccgg ttggagttcc tgcagcggca      2040
     gtgccaatgt ccgtggcaag aggtgctccg aaacttccac ctgctgctca ctgggcgggc      2100
     tcgggagtgg tactgggtgc acgtgcgtca ctgcagggtg gacaggtggt cccagcttcg      2160
     agcctcgctg atggataggt tccgatgcca tcagacggag cacgatcgga tgcaccaact      2220
     tctgcagagg gagcagcagc ccggagaagg agttggcgat tatatccatg cgatgcagca      2280
     gttggcggct cgactgaaaa ggccactgtc agagcggcag ctggtgaaga ttattaaaaa      2340
     gggattgagg gagagcatcg caaggtttgt ctacgcgatg gatgtgctca cggtggatga      2400
     actgcgggaa gagtgctgcg aggtggagcg cagttttgga cgacgtggac ggaccacgta      2460
     cacgcagccg atgcggtatc ctctggcgga aaaggccaag gttagcgagg cgattggccc      2520
     agatcctggt gaggatcctc cgtggcaaga ggtggacgaa gtgcgggcga agcctaaaaa      2580
     tccgttccga gccggctgct ggaattgcgg agccgtggat cacgggttcc gtgactgcgc      2640
     agcaacagaa cgcagactgt tctgctaccg atgtgggaag cccgacaccg tgtctcccaa      2700
     atgtccggat tgtgcggaaa acggtcggct gggcgatccg agggcggaga ggatgcgtcc      2760
     agacaggagt tccgcagaga agaagagctg gtagggttag ataaatgttt accttctaaa      2820
     aatagtaata agtttgcatt acgatactta ccttatgcgg agaggatgcg gcggtatcta      2880
     gagaccagga acaggatctt ctcagagcac cagttaggcg ggatgcgtgt ggtgtctcgc      2940
     aaggtgcaaa aggccaggga gcgatttcgc aaacgtcgga actgccgacg cgaagcagtg      3000
     gccgccgtga ggcgcagttt atcgcgagat cccagaccgt tcgccgcagt ccgagttctg      3060
     accaagcaac tgacggggtt gttggacact ggagcgagtg tgagtctgct tggaaaaggt      3120
     ggcagagagc tggtcgaggc cttggatgtg cccgtccaga agtacttatc cgcagtccgt      3180
     acggcctctg gagaggatcg gtcaattata ggacgggtca agttaccggt ggaataccga      3240
     ggacggacag agcacattct cttctacttg tgtccttacc tggagcagcc agcttatttt      3300
     ggagttgatt tttggcaagc attcggactg gccccagcga ttataggcca catcaattcg      3360
     gaaggcgtga agaaggccga agaattacac gccagggaga tggaacacta cgcggaagtc      3420
     gaggatgacg atgaggagaa acccgatccc gagtcctgga cgctttccaa ggccgaggaa      3480
     caagagctgg aggagatcaa gcagcagttc ttgactttcg agagggatgg cttaggtacc      3540
     accagtctgg agaaacacac tattgagctg atggacggag ccaaagtgtt caaggatcga      3600
     ccctatccga tgtctcccgc gaagcagaag gtggtcgagg acgaggtcga caagatgcta      3660
     gcgctcggag tcatcgagga gagcaaaagc ccctggagta accgcaccac cgtagtgtca      3720
     agatctggaa aacaccggtt ctgcttagac gcacgtaagc ttaatgatgt gaccatcaaa      3780
     gatgcttacc cgttgcccag catagacggc atcctgtcca gaattgagca aacatactac      3840
     atttccagcg tggatttgaa gttcgctttt tggcagattg agttggacac gagcagcaag      3900
     gaatacacag cctttacggt tcctggtcgg cctctttacc agttccgtgt gatgcctttc      3960
     ggactctgca acgcatcaca gaggctggtg agactcatgg accgagtaat tcccgctgaa      4020
     atccgctcga atgtgttcgt ctacttggat gatctgctaa tactagcgcc tgacataaga      4080
     acgcacttga agtatcttcg ccgagtcgct gaatgcctga aggaagcagg gttaaccatt      4140
     gggctgagca agtcgaagtt ttgcttcaag tctttgacct acctcggctt catagtgggt      4200
     ggaggacgtc tgcggatgga tccagggcgt gtagcagcta ttaggcggat gcctgagcca      4260
     aggaccatga aggaagtgag agcctttctt gggaccgctg gttggtaccg tcggttcata      4320
     aagaacttcg caactttggc tgccccgctc acggaatcct tgaagaagac gggaaataag      4380
     aagttttcct tgagtccaga agcacagctg gcagtagagt ccctgaagat ggccctaact      4440
     actgcgccag tgctggtaca tgcggacttc aagcggcact ttttcatcca gtgcgatgca      4500
     tcccagatcg gagtcggtgc agtgttgttc cagcgggatg aagacggcca ggaacaacca      4560
     atagcgttct tctcggccaa gatgaatcgt caccaagtcc attacaccgt cactgaaaag      4620
     gaatgcctcg cagccctgct ggccattcga aagttccggc cgtatgtgga aggaatgccg      4680
     ttcacgtgca tcaccgatca tgccagcttg aagtggctca tgtccatgaa agatctttcg      4740
     ggtcggctgg ctcggtggtc attgcaactc cagggatatg acttcaacat cgaacacagg      4800
     aaaggaagcg agaacgttgt ggcagatacc ctttcgcgtt gtgttgaaga gctaacggtg      4860
     gacccgtcag agttgctcgg cttcgagacc actgagtttg ctggagaaga gtacacggag      4920
     ttgttacaag aggtggaaaa aaacttggcc aacctaccag acttgaggat agtggatggt      4980
     ctcatcttca agagagtctt ttcggcaaat ctggatgacg aggtggaagg cttcgaatgg      5040
     aagttgtgga ttccccagag tctgacccac agcataattg agcgtgcaca ttcggatcca      5100
     acggcagctc atggcggaat gggaaaaact ctggaaaacc tacggcggca gttttactgg      5160
     cctggcatgg cactgcaagt ccgggagttc atacgcaggt gtgaagtgtg caaggagacg      5220
     aaatccccga atttccggat gcaagttggt atcggtgaga gagtccagac tgagcagcca      5280
     ttccagaagc tgtacatcga tttcctgggg aagtatccga ggtcgaagaa gggacaggcc      5340
     tacatcttca ttgtggtgga tcacttctcc aaatacacat ttctgaaagc catgcaagag      5400
     gcatcggcct ccaatgtagt ggagttcctc attcacgagg tgttctacaa gtttggggtt      5460
     ccagaaattg tgcattcgga caacggccgc cagtttacgt ccaagatctt cgaggaggcg      5520
     atggagagct ttggcatcac gcacatcaaa acgccagtcc actctccgca aagcaacgca      5580
     gcggaaaggg tgaaccaaag cgtgttggcg gcgatccgaa gttacttaga agaagaccat      5640
     cgagaatggg acgcgtatct tccggagatt gaggtggccc tccgcaacgc ggtccattca      5700
     gcaactggag aagctccgtt cttcaccgta ttcggacgac acatgttcct gaacggagcc      5760
     agctacaagt tggcaaggaa gttgaagtcg ctgtgtgatc acgaaatgtc tgggatgaga      5820
     acagctgata aactccaagt gatccatgac aaggtgcaga agaacctcga agatgcatac      5880
     gatcggagtc gcctgcggta cgacaaaagg gctcgtactt tccttgcgaa gccaggtcag      5940
     gaagtgtatc gccgcaactt tgtccccagc gatttcaaaa aggccttcaa tgcaaagttt      6000
     gctcggaagt tcctaaaagc tcgggtggtc aggacagtcg gcaataatgc gtacgagctt      6060
     gaagatcttc aaggacgacc gatcggagtg taccatgcca aggacattag gttgtgatct      6120
     ggaaagagga ataacaaagt acacgagctc agaatcggca tgtgtctact tcccgtaaag      6180
     cgtgggcccc gcgttggaca ccgttggaac tgcatcttgg catcgaggcc ggctgaatcc      6240
     gaatagtcca aatccaaatg ctcccaagta ttcctgcgct agtctaaaac tctgtgttag      6300
     cgtctctcgg aatccagggt gg                                               6322
//
ID   Gypsy-23_DEl-LTR repbase;    DNA;    INV; 1702 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DEl-LTR.
XX
NM   Gypsy-23_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1702
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 462-462 (2012).
XX
RN   [2]
RP   1-1702
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 1702 BP; 416 A; 405 C; 440 G; 440 T; 1 other;
     tgttgcattt tcagttgaag ccgtckggaa aatactgaaa cgaaccgata cgtcagcagg        60
     tcccgctatc gataagattt ggtggtgaca ccgactattg atagcgggag aggatctagc       120
     tatttaaatt tagcccggtt cgctcgttaa ctgggttaga tggccttgaa tacgttcgct       180
     gacccatctt gagagagcgg gagggaaaat ggcgagcgac tttggtgtag gtcagggttt       240
     tgctttagtt gctgcaagaa gtagtaggag aacggtcaga aaaaaaccca aaatttaagt       300
     tcgtgattag tgtttgaata actcaaagtg agtgtttatt tattagtccg gaacttgtaa       360
     attacagtgt ttttttttat attgaagccg ccggggaccc taactaaagg gccccggaaa       420
     ttttaaagat ttgggaagtg aaaacttacc aggcggacct aacctggtcg tcgtccacca       480
     gccgccgcag cattggcctc agcagcattg gccgcagcag catcagcagc agcatggccg       540
     cagcagcata agccgcagca gcatcagcag cagcagcatc agccgcagca gcattggcca       600
     gcagcagcag cgatcagtag cagcagcagc agcctcaagc gccagcagct acagcgactg       660
     ccgccaagac ggccagatac ggagattccc tcggtgagtc cgttccggga acgaatgccc       720
     gcgctggcca cgtggtcatc tccaagtcca ccgacgcact gcctccggcc acgctgcgct       780
     atcctccgga ccaactggct ccgtgcggac tcgcgctggt tttcgccgtc agcgtttttc       840
     cattcgtgct gcagtttcaa cacatccgac gttgaactct gcaataaatt agttttagtt       900
     attgttttgt gatatcatgc agtcaagatt gtaaagtact tactgtgaaa tctaatctaa       960
     atttagaggc tcaagcccga accctagccg cgcgtccaac tacatctaaa ttgggtcgcg      1020
     aaatttaata acttgtggga tttgtttagc gtacttacct tatcagcacg tcccttcttt      1080
     tcccttggag ctcctcagga ttaggcgacc cggttggcaa acgcctccaa atttagtgcc      1140
     gtgcggcgac tttgcctgac acttggaact ttaagcgtct aaaaatttcc ctttcggttg      1200
     tttccgcttt gaccgcttct catctgggcg acggtctgag atcggcctta agagtttcta      1260
     acgaaaagaa tagattatca gtaggaatca ataatgaatg tatttactta ttaatctcac      1320
     caagaattaa atgtaaacaa gctaccgaga tggttgtgtg agttaccttg ggcggggaga      1380
     tgagccgatc ctaatccacc aggaatagac tccggtctgc cggagatggg gtgtgcctcc      1440
     cacatctttc ttggggcacc caaggttggg tgggtgcgtc gtggcaagga catcgaagcc      1500
     accaatttcg tcgaattgtc ttagttgctt gatgtaaata taattttgtt ttgttttgat      1560
     ttgtgctaga gatggtaaat cgacgtgaga cgtccgatga gtcggaatcg attgttcgga      1620
     ctgcagggca tagggggtac tccgccctgg gactccgtgg ctagccggcg ctgccctccg      1680
     ggaaagatgc agttccgtaa ca                                               1702
//
ID   Gypsy-23_DMel-I repbase;    DNA;    INV; 5543 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5543
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (15-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   Conceptually extracted from a single locus. Mutiple insertions
CC   are masked out. 5'-end is approximate.
XX
SQ   Sequence 5543 BP; 2229 A; 1089 C; 799 G; 1426 T; 0 other;
     ccaactgact acaaaatact gtagtataac aattttcaac tttgcgattc ccacgaggac        60
     cctccaaagt agaaaaaaaa aacagctact ggtttttaca cataattttt ttttttacga       120
     aaatatttcg gaattttgtt gaatcacttt cacgaagaaa aaaagtatat ttaaaaacaa       180
     attttgtgaa gaaacattta cgatttctat ttgtgctatc ctgaattaac acaatacata       240
     caattaatac attttaaatt ttccaaattt ccgtgaccgt taatggcaaa tactaataac       300
     ttaattagac cacccactcc ttcagtaagc cagacagaac aaaacagagt caatatgaac       360
     caacaagagc ttaacgcaca cattagtaga atagtttcag aagctattgc ttctcaggtt       420
     cttagacgta ccaaaccaaa ttattcagcc tcaacattgg ggaaatctta acgacttaaa       480
     caaaataccg gatgtagtta aaagcatacg agagttctca ggcgactgcg gagagtttag       540
     ttcatggaaa aagggagtat atatgatcat agagaactac gcggcactac aagacactgc       600
     taaatatttc gatataatac ataccataag aaacaaaatt tttggcaatg cagacacagc       660
     cttagaaccc tataacgtgc cactagattg gaatgcaatt tcaaagtgct taacaatgca       720
     ctaggcagat aagcgcgatt tgagtacatt ggtacattga gtgaactata tgaacagacc       780
     accgaacatg gaaatgggta aacgaccagg aaaccccatt cctccttttc cacacggtga       840
     caaacgacaa cgtactttca atatagaaag taacgtacag aatgatgaca ccactacaca       900
     ctacaactag tagcaatgac cagaacgcag gtaatgaaca aaaagaatat gaacaattag       960
     cgtacagcca aacagactca aacgaatacg gacaaacgtt agacgaatac caagaacaat      1020
     acgagtactg ttacggggcc gatttaggac aagaacaata cgcctacctt cattttttag      1080
     agtaaatagc tcctccttac cttattttga ggtgaaagta agagcaaacg ttttgagaac      1140
     acttattgat acaggatcta atagaaacta tattaaacct agtttagtta gcaaccccgc      1200
     tccaaccgag aaaccatttc aagccgttac agttggaggt aacgttaaaa ttacatacta      1260
     taaaatggca cacctattta atattcgaga tgtgcgtatt aaattatttc ttttgccgac      1320
     cttaaaatct ttcgatgcca ttctcggaaa gacactttta aagaacttaa agcagtagca      1380
     gacaacgtaa aagtaattat taaagaaaaa aagtgtgact caataatatt agcccccgta      1440
     cagaccattt gttcgatcaa caaaaaaata agttagaaaa tctacttgaa aattatccca      1500
     aattattctc aaaaccaggc gaaaaattga cgtacgtgat accagaaata cgcacgaaca      1560
     atgaaacacc cgtatattct aagttctacc aatatcccat gtctcttaaa cacgaggact      1620
     taagaatttt agcaaatggt ataatacgac catcttgttc tgcgtacctg tctcacctgt      1680
     gtggattgtt cccaagaagc tcgacgtttc aaacgaaagg aaataccgaa tggtaaaaga      1740
     ttataggaaa ctaaacaaag taacaatagc tgataaatat cctatccccg agataaatga      1800
     agtgcttgcc caattgggta acaacaaact tttttccgtt ctcgacttaa aaagcggatt      1860
     taatcaaata aatatagaga aaaccgcatt ttctataaat aatgccaaat atgagttcac      1920
     acgccttcct ttcggtttta aaaatgctcc atccattttc caaccagcat tagtgaacat      1980
     atagggaaaa tttgttatat ctatatcgat gatataattg tttttagcca agatgagaaa      2040
     tctcatcttg aaaatttgaa taccatataa gataccctat atagagccaa tattaaacgc      2100
     caactcgata aatgcgagtt tctcaagagt aaagttgaat ttctaggttt cgtaatatcc      2160
     gataaaggca ttgaaaccaa tcctgacaaa gtctcggcaa tagctaattt tcctacgcca      2220
     aggacaataa gagaactcag atcattttta ggcctatcag gatactatag tagatttata      2280
     agggattacg caaaacttgc taagccactc accatactgt taagaggtga aaatggacac      2340
     gtaagcaaaa aagcagcatt aactaaggca ataatcctta accaagaagc catagatgca      2400
     tttaggaaac taacaaattc cttaatatca caagacgtaa tacttaaata ccccgatttc      2460
     aaaaaggaat tccacctgac caccgatgca tcaaaccatg ccattggtgc agttctctca      2520
     cagaacaatc aacctatcgc attcatctca cgaactctct ccaaagctga agaaaattat      2580
     gcagctaacg agaaagagat gttggccatt atatgggccc ttaaagcgtt acgcaactat      2640
     ctgtacggta aagccaaagt gaaaatattc actgatcacc aaccgcttac acactcattg      2700
     agtagttggt atggcaacgc taaaattaaa agatggaaat ctcacctaga agaatacgcc      2760
     tacgagttac tttacaaacc aggaaaagac aacgtagtag tagatgcatt ttcgcatttc      2820
     aaatttaggt cagataaact cagcatccac ttaacatagc gacgatagtt caagccataa      2880
     cctcatccct agttaggaat gcttttaaaa atcaaatttt catccataag gcaaatactg      2940
     acgtttcata gatatgacat atatttaaaa acttacgaac ctgactaaca cttcggaaat      3000
     accttaaccc atccgttatc aacgaaatac aaacttctga aaatatcatg ggaaaaatac      3060
     aatcgatata cccagataac tttagtaaag ttaaaattcg cttttctcaa agcaaagtta      3120
     ccgacctcag taacgaatca gagcaagaag aggagatact taaagtcgac aattgtccga      3180
     aaaattttac ttcccccaaa tgaagaaaaa aaaaaaaatt tagtaaaaca atgaaaaatg      3240
     tgcaaggaag aaaaaatacg aaagacatcc gtctaaccct gttttaaagc aaactcctat      3300
     tccggaatac cccggacaaa ttatccacat cgatatctat tccacagaaa aggaattagt      3360
     tctaactgcc atagacaagt cctctaaatt agctcaagcc aaagtaataa aatccaaagc      3420
     tatagaagac ataagaaacc ctctaagata aattattttc tacccaaata tgttgtcatg      3480
     gacaacgaaa aatccttaaa ttcacattcc ataactttta ttctcaaaga ccaactcaat      3540
     atagacattt ttcaagcacc accacacaaa aacactttaa acggtcaggt cgaaagattc      3600
     cattcgacac tctctgaaat aataagatgt atcaaaaaag atggaaccca tagaaacttt      3660
     tttgaattac tagaaagagc agtgtacgaa tataactaca ctattcattc cgtatcaaaa      3720
     agaacaccac ttgaagtgtt ctttggtaaa acagcatcaa ctaaccccga acttaggaac      3780
     aaactagact tgacaacata gacagactaa tagaccaaca gaaaaaagac ctcgaatacc      3840
     ataaccagaa acgtaacaca ttaaaaaact ataactataa cgacttggtt ctaaattatc      3900
     agcaagatca gcaaaagaaa tagttaaaaa aaaacaagaa tactacagtt acagaatcag      3960
     gaaagaaaat acacaaaagt tacatccaaa ataataaaat ttattttatt tttttagggc      4020
     attcattata tgcaccataa caatagcaca tggacttcta gacattacca actataccga      4080
     cgtactgcag taataaataa aggattagga aaaattcaaa catccaccac aagaataatt      4140
     catgttatag atataaacca cattacaaac actttaaata cattagctcc atacgtaaat      4200
     aacgaactaa aaaattcaaa caaataccac actttaaaac acgaattggt tcaaacattc      4260
     tctattcttc aaacattatc ccctgcacta cataatagaa acactagagc aatcaatata      4320
     atagaaactg catggaagta cattgccggt actccagacc acgacgattt agttttactc      4380
     caagataata tgaacaatag caacaatata gcaacaatag caacaaacaa gttttaatta      4440
     acaatcaatt tcaagaaaga ctaaatcaaa taattaaatt tattaattct ctatcaaact      4500
     ctatcagaaa agacagctat attaacacag aaataccttt taacttgcaa aatcaaatca      4560
     ggattgccaa agaagaaatc ataaatgtta agtacgctat tcaatgggct aagttaaatg      4620
     taattaaaaa cattcctatt aaacgaaaaa taaataattg aaaatgataa aatattcaaa      4680
     gaaagcaata tgccattata atccatagaa taaatgttag aattttccga tataactata      4740
     ttaaataaca aaacaacaat tttatatata attaaagtcc caaatttaga aaaaactata      4800
     tacgaaaata cacttatcaa gctcattata aaaaagaaca caattgtaaa tataaaattt      4860
     caacaaatat tttttaataa cggaaatatg tttggcacaa aaaataaatg ttaatgttat      4920
     cataagatta aaatttgtaa caagaataat attgtaaaca ttagcaatag tacttgtcta      4980
     cctatgcttc tgattggaaa gaaagggtta tgtgaattca gcaatgcaga ccacatcgaa      5040
     acagtagagg aaataagcag cggtcttata atagtcaaca actacaatgg cacactagag      5100
     tggaacaaca aaatacagaa actgtaggaa acatacgtca tcaacttctt taacaagaca      5160
     ctcaccatta atggaaaaga gttcaacaac gttgagacga aacccataca atcatcaagg      5220
     ccccttatcc aaataaccac tgaagagaaa gaacgaatca aaatactatc tcttaacgct      5280
     ctggaaagtt aacatataaa caccaaacgt ttggcagagt tagaaacaga taacaactac      5340
     aacaaaagct acgtcatctt tctcttcgct acctatacaa tcgtcgcaat ctttttatac      5400
     tggtgcgaac gaaagcaaga gaagattatt ctaagtggca cctcccgaac cactgaaaac      5460
     cacctccaga gttaacacca accataccat accattcttc taatgaacgt cgcttgtgga      5520
     ccagctcgaa atagaggggg agg                                              5543
//
ID   Gypsy-23_DMel-LTR repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-479
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 726-726 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 479 BP; 182 A; 104 C; 66 G; 127 T; 0 other;
     agttaacaac acgctttacc aaaagctcat aaagaaaagc ttaggtcagc gtctgcatta        60
     tttcctgcac gcgccaacat aatataaacc aaaatataac aaaataaaca atatcagagc       120
     attgaactgc agttgcaaaa cagttcacac gcgcacctgc aattcttacg aaatattggc       180
     aacaacagga aatggccaaa tttattaaga agtcatcagc agaaatgcaa ttaaccaatc       240
     acagccgact gcacaattga caaactgtta tcaaactttg attcgcgcgc cccgcgctgc       300
     accatcgctg ccaccgttgc cgccactgct acaacaaatt ctgattcaca aaagaccaga       360
     ttagggaatt agagtagaac tttaatttag tcttaacttt gaacacaatc aataaagtac       420
     ccaaaataaa tttgtaaaat ttattttttt atttatttta ataaattaat aatttaact        479
//
ID   Gypsy-23_DMo-I repbase;    DNA;    INV; 4343 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-4343
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2961-2961 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           649..1383
FT                 /product="Gypsy-23_DMo-I_1p"
FT                 /translation="MYKYCHENVVKSHLQILATVQVSQFNLEILFHVVADD
FT                 CLKHNVMIGREILQLGFGVLIEADKFDIYKIKQINETYKESNTKFLENLIG
FT                 NNVELNESDRRKLKEILAEHSNDFIDGIPNRRVSTGALEIRLLDKNKTVQR
FT                 RPYRLSADEKELVRGKIQQMIKQNVIRASSSPFASPMLLVKKKDGSDRLCI
FT                 DYRELNANTVSDKYPLPLISDQIARLRGGKYFSSLDMASGFYQIPIHEDSI
FT                 ERTL"
FT   CDS           1374..3620
FT                 /product="Gypsy-23_DMo-I_2p"
FT                 /translation="ANFVTLEGQYEFLAMPFGLKNASSVFQRAIVKALGEL
FT                 AYSYAVVYIDDVLIVAESKEQAFERLAVVLKALANAGFSFNIKKCAFLRTG
FT                 IEYLGFYIKNGEIKPNPRKIEALSALPKPNSVTQLRQFIGLASYFRQFVPR
FT                 FSEQMKPLYHLTAKNSGFVWKEEHEQIRQKIISMLTSDPVLIIFDPQLPIE
FT                 LHTDASSYGYGAMLMHKQEGKCRVVEYYSKCTSASESKYHSYELETLAVYN
FT                 AVKHFRHYLHGTKFSVYTDCNSLKASRTKAELTPRVHRCWAYLQSFDFNVE
FT                 YRKGSQMAHVDFLSRNPLPKEVKIVKKVEVRVDLAEITVNWLLAEQQRDSE
FT                 IMDIVKQLNAGETQNDVLRTYEIRAGLLYRIIQRNGKTRCLPVIPNAFKWS
FT                 VINHVHEAIMHLGWQKTLDKVFEQYWFKNMTKYVRKFVENCITCKLSKPSS
FT                 GRIQMEMHPIPKIEIPWHTIHIDISGKLSGKNDVKEYVIVQVDAFTKFVHL
FT                 HHTLNLDTNNCIEAVKSTIALFGAPNRIIADQGRSFASSGFKDFCSNNKID
FT                 LHLIATSASRANGQVERVMSTIKSMLTAVETSSRTWQEALKEVQLAINCTT
FT                 NRVTNFSPLELLIGGAARPLGMLPIGEETKIDRNEARIKAKENMVRNAEYD
FT                 KNRVDKNKAKIRQYKVGDYVLLKSEERHQTKLDPKFKGPFVVTELLEGDRY
FT                 ILKSLTNKRKYKYSHEFLRALPDKQVEREMFDDIDHGETDAGQKVTSAT"
XX
SQ   Sequence 4343 BP; 1434 A; 676 C; 1011 G; 1221 T; 1 other;
     tcagaagtgg gatcggcacc acctcctacg ttctcggagg agcagtggcg tacgattttg        60
     ggcctacaaa accgaatttg tcaagactat caatacgtga agtgagcaac agaaacgtga       120
     cgtcattcta cgaaaattta acgctgacgt ggccgacgtt gatgctgaaa attgatgtgc       180
     gactttagct gaaatatgtg tggtagatga atcgaagata agtataccga tccgaggtga       240
     gagctttcca attatctttg attctggtgt attattcctt ggctaaagat agctttgcac       300
     aaaaggctat atgaaataag tgagagtact cggtcgaggc tgctcgactg ggagatgccc       360
     ttgactcctt gggctgttgt tctggttatt ctgcgcattt ttgtgtacgc atgcggtggc       420
     gcatgcacgc gtgtgctggc tgcgtggtgg gcggcggctg cgctgcggtg aggccggtgt       480
     tgtgagagtt tgtatgttgg atggtttatc ttgtggtggg actgtctctg tgggactttc       540
     ggagcgtgat cgtggtgctc agatgtgtgt gttccgaggc gcggatctct agtgcatttt       600
     tggtggtaga atttctgatt tttgataaag tcgcttaaag ataatcgaat gtataagtat       660
     tgccatgaaa atgttgtgaa aagccatttg caaattttgg ctacagtgca agtgtctcaa       720
     tttaatctag aaatattatt tcacgtagta gcagatgatt gcttgaagca taatgtaatg       780
     attggtcgag aaatcttgca gctcggtttt ggtgtcttaa ttgaagctga caaatttgac       840
     atttataaaa taaaacaaat taatgaaacc tacaaagaaa gtaatactaa atttctagaa       900
     aatctaattg gtaataatgt tgaactgaat gaaagtgata ggcgaaaact aaaagaaata       960
     cttgctgagc attcaaatga ttttatagat ggaataccaa atagacgtgt atcgactggt      1020
     gctttagaaa ttaggttgtt agataaaaat aaaacagttc aaagacgccc atataggctg      1080
     agcgcagacg agaaggaact tgttagagga aaaatccagc aaatgattaa acaaaatgtc      1140
     atacgagcaa gcagctcacc atttgctagt ccaatgttat tggttaagaa gaaggatggt      1200
     agtgatagat tgtgtataga ctaccgagaa ttaaatgcga atacagtgtc tgataaatat      1260
     ccccttccat taatatcaga tcagatagcc agattacgag gtggaaaata tttttccagt      1320
     ctggacatgg caagtgggtt ttatcaaata cccatacacg aagattctat tgagcgaact      1380
     ttgtgactct agagggtcaa tacgaatttt tagctatgcc gtttggcctt aagaatgcct      1440
     cgtcagtgtt tcagcgtgcg attgtaaaag ctttgggtga attggcatat tcatatgcag      1500
     ttgtttacat tgatgatgtt ttgattgtgg cagaatcaaa agaacaagca tttgaaaggt      1560
     tggcagtcgt tttaaaggca ttggcaaatg caggattttc gtttaatata aaaaaatgtg      1620
     cgtttttgag aacaggaatt gagtacctcg gattttatat aaaaaacggt gaaataaaac      1680
     caaatccgag aaaaatagag gcgttgtccg ctttaccaaa gccaaatagt gtcacacaat      1740
     taaggcaatt tataggcctg gcctcatatt tcaggcagtt tgttcctaga ttttctgaac      1800
     aaatgaaacc gttgtatcac ttgactgcga aaaatagcgg atttgtttgg aaggaggagc      1860
     atgaacaaat acgtcaaaaa atcatttcca tgttgacaag tgacccagtg cttatcattt      1920
     ttgatccgca actcccaata gaacttcaca cagatgcaag ctcgtacggt tatggtgcta      1980
     tgctcatgca taaacaagaa ggcaaatgta gagtagtcga gtactacagc aaatgtactt      2040
     cagcgtcaga atccaaatat cattcatatg agttggaaac tctggcagtg tacaatgctg      2100
     tgaagcactt tcgacattat ttacatggca caaaattttc cgtatatact gattgcaatt      2160
     cattaaaagc aagccgtaca aaagctgaat tgacgccaag agtgcatcga tgctgggcgt      2220
     acttacaatc atttgatttc aatgttgaat atcggaaagg cagccaaatg gctcatgtag      2280
     attttctgtc tcgaaatcca ttacccaaag aggtcaaaat tgtaaagaaa gtagaagttc      2340
     gtgtggactt agcagaaatc acagttaatt ggctattggc agagcagcaa cgcgattcag      2400
     aaataatgga tatagtcaag caattaaatg ctggggaaac ccaaaatgat gttttaagaa      2460
     catacgaaat tagagccggg ttgctgtatc gcattattca gcgaaatggc aaaacacgtt      2520
     gtctgcctgt gattccgaat gcatttaagt ggtccgtaat taatcatgtg catgaagcaa      2580
     taatgcattt gggttggcag aaaactctgg acaaggtctt tgagcaatat tggtttaaaa      2640
     acatgacgaa atatgtaagg aaatttgtag agaattgcat aacgtgtaag ttgtctaagc      2700
     cttcgtccgg aagaatacaa atggaaatgc atcccattcc caaaattgaa ataccttggc      2760
     acactataca tatagatatt agcggcaagt tgagtggcaa aaatgatgtt aaagaatatg      2820
     tcattgttca ggtagatgca tttactaagt ttgtccattt acatcacacg ttaaaccttg      2880
     acacaaataa ttgcattgaa gccgtaaagt caactatagc actttttgga gcacctaacc      2940
     gtattattgc agatcagggc agaagctttg caagtagcgg ttttaaagat ttttgttcaa      3000
     ataacaaaat agatttgcat ttaatagcaa caagcgctag tagagctaat gggcaagtgg      3060
     agcgcgtgat gagcactatc aaaagtatgt tgacagcagt ggaaacaagt tcacgaacat      3120
     ggcaagaagc tttaaaagaa gtacagttag ccataaattg cacgaccaat agagtaacta      3180
     actttagtcc actagagtta ttgatcggtg gggcagcaag gcccttgggc atgctaccta      3240
     tcggtgaaga aacgaaaatt gatcgtaatg aagcgagaat taaagctaaa gagaatatgg      3300
     tcaggaatgc cgagtatgac aaaaatagag tagataaaaa caaggcaaaa ataaggcaat      3360
     acaaagttgg tgattatgtt ttgttaaaaa gtgaagagcg gcatcagaca aaattggatc      3420
     caaaatttaa gggaccattt gtagtgactg aattgctaga aggtgaccgt tacattttga      3480
     aatcattaac gaataaaaga aaatataagt attcgcatga atttttacga gcattacccg      3540
     ataagcaagt cgaaagagaa atgtttgacg acattgacca cggtgaaaca gacgctggtc      3600
     aaaaggttac ctctgccacc tagaaggtgt ggaggacatc atacacaggg gctaggttca      3660
     agtgtcaatg ttcacgctgg tgaaggctga aattgttcat ggcggacagt tgatctagtg      3720
     agagatcaag gtacatgtgg tacatatcgt cgcagagtgg cggcaagagc ctgtttaact      3780
     gtggtatgat aaaatggaaa gccaaatggt cgggtttgcg cagaagagta caagctactg      3840
     aatttgagtg atatcctgcc aaactgtcat ttgatggaaa gccaaatggt cgggtttgcg      3900
     cagaagagta cgagctacta aatttgagtg atatcctgcc aaactgtcat ttgatggaaa      3960
     gccaaatggg cgagttgtta cggaagggta cgatgtactt tgaaaatgta aatgagattt      4020
     tccgtaacgc tgacatttga agatctaaat atgtagatgt gagacaaaca tgaaatccaa      4080
     atggttgakt ttatttgtat taactaacat ttgaagacat ttgaaaaatg tgtaataaga      4140
     ttgagtaatt attatgcggg taatgaacag aaagatttaa ttgtaaatta atgtaaatgt      4200
     ttaaatgaag cgaatatgtt gtgttgaatg atgaaaccat gtaaaagaat tggcttattt      4260
     tgattaaaaa aaaaaaaaaa gatatgattc taatcagagt gtttaatttc atacacgagg      4320
     acgtgtaatc gtcaggaagg ccg                                              4343
//
ID   Gypsy-23_DMo-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-485
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2950-2950 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 485 BP; 156 A; 80 C; 130 G; 119 T; 0 other;
     tgtcagagat ttatgtaatt aacatgagaa tttgacataa caggagcatg ttatgttaat        60
     aacatgaatg taaaatgttg atgacgtagc aatgtaatgc tgcgttgcca cgtcagtgag       120
     tctgacacgg tattgcgatg ttgtaaaact tcatagcaac gagctgtgtt gctactatgt       180
     acaatgcaat aagcaaagta aatgatgact gaggaatgtc ggttagcggt aaattctatg       240
     ccgagaacga ggcccgagag cgagagagat gcctcggccg agtgtggcgc gattgtagtt       300
     gttatgtaaa gaggaagaga agcacgagcg ttgaggctgt gcgtacgtgg cttttagtct       360
     gaggacagca gaggtaacaa cgagacaatt gcgactcgct gcgttcaaaa agcaaaagaa       420
     caaatatcgc ctactgaaat taagaagtta ttatggagca cgagaattca gagccatctc       480
     cgaca                                                                   485
//
ID   Gypsy-23_DWil-I repbase;    DNA;    INV; 5940 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DWil_;
KW   Gypsy-23_DWil-LTR; Gypsy-23_DWil-I.
XX
NM   Gypsy-23_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5940
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5940
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1078..2295
FT                 /product="Gypsy-23_DWil-I_1p"
FT                 /translation="MDQNIEILKEKFQKAYKCLNKTIYIHPQTINKHLETI
FT                 FDSYNRIKSSSTDICNESSSKSFTELIYSLNKQLISIATKHNIKFTIPVDS
FT                 NLEATFEPLIAKDTEEPAVKDNPGDIQDTSGVKDNPENIQDNTKPKMVQTK
FT                 IEFLNTASKLIQEYDGGVETIQSFIDSLELINEIKAEHEETAIKVIKTKLK
FT                 GDVRLLVTNENTINGIIQTLKKEIKGETVQVAEARLMNLKQNGKNANSFMS
FT                 EIENLTKSLKRAFITDNVNPETAKKYATQTAVKSIIKNCDNEKVRTIIEAG
FT                 NFTEMNDVIAKFVNTSTNIEQDHSVFYTKRNNYTNKNSYNNNRNYNNNYQN
FT                 RNPNDNTNYNNTRNYNNYSNNYNRRNYNNRYTKTNYPPKTQQNNNVRFTNI
FT                 EENSENSESPLV"
FT   CDS           2247..5891
FT                 /product="Gypsy-23_DWil-I_2p"
FT                 /translation="IYKYRRKFGKLRKSSGVKNRTNKIYNLNCNLNSYITL
FT                 NFDDVGTIKLLLDTGADVSLIKQEILRKDNTVNIQKRTKLSGIGKDVLFTI
FT                 GETKLKVSNLSTVHTFQVIENDFPIPCDGILGLDFIKKFNCTLNYSTNKLI
FT                 IDPYKSRYKIIINIGISQNTHVFHIPSRTEKIVRITISSNDNNIFIPNQEL
FT                 HPGVFVANTIASKTNPYVRILNTNNTDVQIANINLLNEKLSDYEILKIDKQ
FT                 HDSKHKSTIMNKLAPHFPDFVKEPLHKLCSEFNDVFAIESEQISSNNFYKQ
FT                 KLRLKDTTPVYTKNYRIAHSQKTEINKQVDKLINDDIIEPSMSEFNSPILL
FT                 VPKKALPGSKEKRWRLVVDYRKINKQLVADTFPLPRMDDILDQLGRAKYFS
FT                 CLDLMSGFHQVELEEKSRDITSFSTDKGSFRFKRLPYGLKIAPNSFQRMMS
FT                 LAFTGLSPSQTFLYMDDLIVIGCSESHMIRNLRDVFETCRKYNLKLHPDKC
FT                 SFFRHEVTFLGHKCTNKGILPDESKFKTIQDYPTPKNGDEAKRFVAFCNYY
FT                 RRFIPNFAYHAQFINRLSRKNVEFIWDANCQAAFEYLKNKLLSPQILQYPD
FT                 FNKKFCITTDASKIACGAVLSQEFDGLQLPISYASKAFTKGESNKSTIEQE
FT                 LTAIHWAIQYFKPYIYGKKFLIRTDHQPLTYLFSLKNPSSKLTRIRLDLEE
FT                 FDFTIEYIRGQENFAADALSRIEFENIKNIETNKILKVATRSETKKLVHKE
FT                 NKINNSRIETPRIYEIINPSEAKKYAQIKFKKCKCFITKNKEKLLSFNIGD
FT                 LIISGRIDLDRFLPRLEKEAGAQKIYKLKIDMSEKLLRSLTPNELKQKGKD
FT                 TLKHLEIAVLPQVKVITNKEEIRNTLNKYHNDPIEGGHCGVNRTLGKIKRD
FT                 FFWKNMSRDVATYIKNCEKCKLAKVTRHNHSPLVITPTPATTFDTIIIDTI
FT                 GPLPKTMNGNEYAVTIICDLSKYLISIPIPNKSAKAVAKAIFEKFILIYGS
FT                 VKTILTDMGTEYMNSILIELCKNFNITKINSTAHHHQTLGTVERSHRTFNE
FT                 YIRSYISIKKDDWDEYLAYFTYCFNTTPSTVHGYAPFELVFAKHPKTVPFS
FT                 SETVEPIYNIDDFNKEIKFKLQIAQNRAKLLIEKFKALQKETYDKNTKKVS
FT                 LTEGQEILLKNDTGHKLDNKYTGKYTIQSIGPNNNIVIADDKNKKQTVHLD
FT                 RIKIT"
XX
SQ   Sequence 5940 BP; 2640 A; 1071 C; 825 G; 1404 T; 0 other;
     tggcgatcct gcctaacatt ggcaacaaac aaaaaggcaa taaaaaaaaa aaaaaaaatc        60
     cttgccatac ataggcaaag tgataaaagg actcacatac cgatgaccag gaccattacc       120
     caaataaagc ggcgaggtgg ccttctcgtc agacttagaa ggcagcgagc ggccctgctg       180
     gcccaagtaa acagcgaccc accaccacca tgggcagagg catgccaaat ttggattagg       240
     atatgccgac ttgaggaaca gcagcaacaa caaaaagagg caaagcagca caaccaacag       300
     cagcagaacc gaccagcaac aacagcagaa aaataaatca aaaaaatcaa tttaataaaa       360
     aagtgtgcta atatatctag gcacctttgt ggcaagaggc gatctttgcg ctgccatcat       420
     aaatcaattt aaatatacat atgtgtaaat attaacgaaa aaaaaaaata catatatatc       480
     taaataaatt taatatattg tctatacaat ttttttttca ataagtctat cattgccaaa       540
     aaaaaaaaaa aaaaaaaaaa aataccctag aaaagagaaa acaaaaacaa aaaatcacat       600
     attttcaaat atacactaaa atgaaaacta cacaaaaacg aaaaaaaaca aatatataca       660
     tatacaatta aataataaat tccaatcagc cgtatatacc ccaacatacc ctaacaaaga       720
     gcacatgtca accatgtgca ctcaaaattg cacaaacaac ataagcacag ttgtaaagct       780
     cgccacgatc aaagcgagct tctaaaaaaa aaaaaaaaag ctcaagaaaa tttcacaaag       840
     cttgcaagca cacataaagc tttctgatcg cagcaagctc cacaatatca aaactgccca       900
     ataacgaagt ctaaataccc tataagaaaa attacaaaaa ttttttttgg aaataattaa       960
     atattagaaa atagaattat aaacaatttg aaaaaaaaaa aacaataaca aaaaaaaata      1020
     taggagaatc agaaaatgaa ataattaaaa gaacaaaatt attttaacgt aatttcaatg      1080
     gaccagaaca tagaaatatt gaaagaaaaa tttcagaaag catacaagtg cctaaataaa      1140
     acaatttata tacaccctca aaccataaac aagcaccttg aaactatctt cgacagttat      1200
     aatagaataa agagtagcag tacagacata tgcaatgaat ctagcagtaa aagctttact      1260
     gagctaatat atagtttaaa taaacaacta ataagtatag caacaaaaca taatataaaa      1320
     ttcacaatac cggtagattc gaatctagaa gcaacttttg aacctctaat agcaaaagac      1380
     acagaagaac cagctgtaaa agataaccca ggagacattc aagatacatc aggtgtaaaa      1440
     gataacccag aaaacattca agataataca aaaccaaaga tggtgcaaac aaagattgaa      1500
     tttcttaata cagcctctaa gctgattcaa gagtatgatg gtggagtaga aacaattcaa      1560
     agtttcatag attcactgga attaatcaac gaaataaaag cagaacatga agaaacagct      1620
     attaaagtca taaaaacaaa actaaaaggg gacgttagat tactagttac taatgaaaac      1680
     actataaatg gtataatcca aacattaaag aaagaaatta agggtgaaac agttcaggta      1740
     gcagaggcaa gattaatgaa tttaaaacaa aatggcaaga acgcaaattc atttatgtca      1800
     gaaatagaaa atcttactaa atcattgaaa cgcgcattca taacagacaa cgtaaaccct      1860
     gaaacagcaa agaaatatgc cactcaaaca gcagtgaaat caatcataaa gaactgcgat      1920
     aacgaaaagg tcagaacaat aatagaagca ggcaatttta ctgaaatgaa tgatgttata      1980
     gctaaatttg taaatacatc tacaaatata gaacaagatc acagcgtgtt ttatactaaa      2040
     agaaacaatt acacaaataa gaactcgtac aataataata gaaattataa taataattac      2100
     caaaatagaa acccaaatga taatactaac tataacaata ctaggaatta caataactat      2160
     agtaataatt ataatcgaag aaattataac aatagatata ccaaaactaa ttatcctcct      2220
     aaaacacaac aaaataataa tgttagattt acaaatatag aagaaaattc ggaaaactcc      2280
     gaaagtcctc tggtgtaaaa aatcgaacaa ataaaatata taatttaaat tgcaacctta      2340
     atagctacat aactttaaac tttgacgatg tagggacaat aaaattacta ttagacacag      2400
     gagctgatgt atcactaata aaacaagaaa tattaagaaa agacaataca gttaacatac      2460
     aaaaacggac aaaacttagt ggaataggca aagacgtcct atttacaata ggcgaaacca      2520
     aactaaaggt cagcaacctc tcaacggtac acaccttcca agtaatagaa aatgatttcc      2580
     ccatcccatg tgacggaatc ttggggcttg actttataaa aaaattcaat tgcacactca      2640
     attattccac caacaaattg ataatagatc catataaatc aagatataaa attataatca      2700
     atatagggat cagtcaaaac acacatgtat tccatatccc atctagaaca gaaaaaattg      2760
     tacgcattac aatatcctca aacgacaata acatctttat ccctaatcaa gaattacacc      2820
     cgggggtatt cgtcgcaaac actattgctt ccaagactaa cccatatgtc cgcatattaa      2880
     atactaacaa cacagacgtg caaattgcaa atataaacct attaaatgaa aaactgtccg      2940
     attatgaaat cttaaaaata gacaaacaac atgattcaaa acataaatcc acaataatga      3000
     acaaactagc accccatttt cccgatttcg taaaagaacc tctacataaa ttatgctcag      3060
     aatttaatga tgtattcgca atagaatctg aacaaatatc gtccaacaat ttctataaac      3120
     aaaaattaag actcaaagac acaacaccag tctacaccaa aaactacagg atagcacaca      3180
     gtcaaaaaac cgaaatcaat aaacaagtgg acaaattgat caatgatgat attattgaac      3240
     catcaatgtc tgagttcaat agtccgattt tattggttcc taaaaaagcg ctacctggca      3300
     gtaaagaaaa acggtggaga ttggtagttg actatagaaa aattaacaaa caactagtag      3360
     cggatacatt cccactaccc agaatggacg atatccttga ccagctagga cgcgctaaat      3420
     acttctcttg tttagactta atgtcaggat ttcatcaagt agaattagaa gaaaaatctc      3480
     gggacataac atcattttcc acagataagg gctcattcag attcaagcga ttaccatacg      3540
     gattaaaaat tgcaccaaac tcgtttcaaa gaatgatgtc ccttgcattc acgggtctat      3600
     caccatccca aacattcctt tatatggatg atctaattgt aattggttgc tctgaaagtc      3660
     acatgatcag aaacttaagg gatgtttttg aaacttgccg aaaatataac ctaaaattgc      3720
     acccagacaa atgctccttc ttcagacatg aagttacttt tctaggacac aaatgcacaa      3780
     ataaaggaat tttaccagac gaaagcaagt tcaaaacgat tcaagattac ccgactccca      3840
     aaaatggcga cgaagccaaa agatttgtag cattctgtaa ttactaccgt agattcattc      3900
     caaactttgc ataccatgca caatttatca atagattatc taggaaaaat gtagaattta      3960
     tctgggatgc aaactgtcaa gcagcttttg aatacttaaa aaacaaatta ttaagcccac      4020
     aaatacttca atatccagat tttaataaaa aattctgtat cacaactgat gcaagcaaga      4080
     tcgcatgtgg agccgtcctc agccaagaat ttgatggact ccaattaccc atatcatatg      4140
     catctaaagc atttacaaaa ggcgaaagca ataagtcaac aatagagcaa gaattaacag      4200
     caatacattg ggcaattcaa tatttcaaac catacatata cgggaaaaaa ttcctaatca      4260
     gaactgacca tcagccatta acatacctat tttctctaaa aaacccatcg tcaaagctta      4320
     ctagaataag gctagattta gaagagttcg attttactat agaatacatc aggggacaag      4380
     aaaatttcgc agcggatgct ctctccagaa ttgaatttga aaatataaaa aacatagaaa      4440
     ctaataaaat acttaaagta gcaacaagat cagaaacaaa aaaattagta cataaggaaa      4500
     acaaaattaa caatagcaga atagaaacac caagaatata tgaaataata aatcctagcg      4560
     aagccaaaaa atacgcgcaa attaaattca aaaagtgcaa atgttttatt accaaaaata      4620
     aagaaaaatt actctccttc aacataggcg atttgatcat tagtggaaga atagatctag      4680
     atcgattcct tccaaggctt gaaaaagaag ccggtgctca aaaaatctat aaactgaaga      4740
     tagacatgtc agaaaaacta ttaaggtcac ttacacctaa tgaactaaaa caaaaaggaa      4800
     aagacacatt aaaacattta gaaatagcag ttctacccca agtaaaagtt ataacaaata      4860
     aagaagaaat aagaaataca ttaaataaat atcataatga cccaatagag ggaggtcact      4920
     gcggggtaaa cagaacacta ggaaaaataa aaagagattt cttttggaaa aatatgtctc      4980
     gggatgttgc aacatacatc aaaaattgcg aaaagtgcaa actagccaaa gtaaccagac      5040
     acaaccactc cccattggtc ataacaccaa cccctgcaac cacttttgac acaataataa      5100
     tagatacaat tggaccatta ccaaaaacaa tgaacggtaa tgaatacgca gttactatta      5160
     tctgcgatct gtccaaatat ctcatatcaa taccaatacc aaacaaaagt gcaaaagcgg      5220
     ttgcaaaggc aatattcgaa aaattcattt taatttacgg ttcagtgaaa acaattctaa      5280
     cagacatggg aacagaatat atgaattcaa tactaataga actttgcaaa aattttaaca      5340
     taactaaaat taattccacg gcgcaccatc atcaaactct tggaacagta gaaagaagcc      5400
     atagaacttt caatgaatac atcaggtcat atatatccat aaaaaaagac gattgggatg      5460
     aatatctagc atacttcaca tattgcttta acaccactcc atccaccgta catggttatg      5520
     caccttttga actagtcttt gcaaaacatc ctaaaactgt cccattctcg tctgaaacgg      5580
     tagaacccat ttacaacatt gatgatttca ataaagaaat aaaatttaaa ttacaaatag      5640
     cacaaaatag agcgaaactg cttatcgaaa aatttaaagc attacaaaaa gaaacatatg      5700
     ataaaaacac aaaaaaagta tcgctaactg aaggacaaga aatactttta aaaaatgata      5760
     caggacataa attagataac aaatacacag gcaaatatac aatacagagc ataggtccta      5820
     acaataatat agtaatagcg gatgataaaa acaaaaagca aacagtacat ttagatagaa      5880
     taaaaataac ataaaaagga tgttagaaaa atataaattt ttctttttaa aaaaaggagg      5940
//
ID   Gypsy-23_DWil-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   scaffold_181117;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DWil_;
KW   Gypsy-23_DWil-I; Gypsy-23_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-200
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181117; Positions   35872   36071.
XX
SQ   Sequence 200 BP; 63 A; 40 C; 37 G; 60 T; 0 other;
     tgtagtatac ttttagggat aagattaggg cacatacttt tagggataga ttgtaagtaa        60
     ttagaactta agcataatgt ctagctttaa gtaccgttaa ggacactagc cataagacca       120
     atgtaaacgt tctcctataa ataccgggct tgcggcccca ataaatcact tcaagtcaaa       180
     ccttgccttc gcctgtttca                                                   200
//
ID   Gypsy-23_DY-I repbase;    DNA;    INV; 6666 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DY_;
KW   Gypsy-23_DY-LTR; Gypsy-23_DY-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6666
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1834-1834 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3712-4215] - Reverse transcriptase
CC   Positions [5311-5802] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1573..2958,2962..6171)
FT                 /product="Gypsy-23_DY-I_1p"
FT                 /translation="MPLSEEEGSAGSSPKCILCEKSLASASIVKIKCGHKF
FT                 HKNCFEVYSKTSNTCPICKEPQHHTRLQKRQNTPSRSAPANNEDSGQAEIP
FT                 QQLIGNMVAEQVKAMQNELLTQLSEKMSQLIQANIAVHFPQPPITTANIDT
FT                 RRYSESVNFQVGGPTSMVHGSGRATPRTEVTDLVQRPDKVGQILNSWKLRF
FT                 SGSPEGLGVDNFIYRVEALTQQTLEGNFVALCSNSSLLFDGKARDFYWRFH
FT                 KSVREVRWDSLCYALRKQFRDTRTDVDIREAIRDRKQREKEDFDTFHDAIM
FT                 QLMDSLETPMSERDVVDTLSRNLRPEIRHELLNVNVGTVDRLREICRRRER
FT                 FLDDVRRSHSYQKSIPFRKNVSELIEEIHLDDAVEFSDDGDEGEIGAMALI
FT                 CWNCRKEGHRYQDCEGKRKIFCFGCGRPNTYKPSCVKCQKKLQDEHTASSA
FT                 VVCSAPEIDEPRCEPVEENLSPTINFPNLSDSIVSPFTPWPQLIKSNQLSI
FT                 NPMSVSPKKRSRNANRMRAFWRAAKAVNAIRYKKADKRPYAEVRLLDKVVL
FT                 GLLDTGAAMSVVGGKLAEQIVVSKIPFKRAASVASTADGKKQEVIGRLRTP
FT                 VQYKQVIKDLELHIIPSLSQDLYLGIDFWKEFDLLPVSMSVDEISPESHQL
FT                 SVSQQDILKSVVQRFPSFAVSGLGKTNKISHTIDIGDAKPVKQRHFPVSPA
FT                 VERLLYQEVDRMLSLGVIEESDSPWSSPVVLVQKPGKIRLCLDSRKVNAVT
FT                 KKDAYPLPQIDGILGRLPKAMFISSLDLKDAYWQIPLDPASRDKTAFTIPG
FT                 KPLYQYKVMPFGLTNASQTMTRLMDKVIPANLRNEVFVYLDDLLIVSDSFE
FT                 AHMRVLGLVASYVKTAGLTLNVEKSKFCMRTVKYLGHIVGEGVIRTDPDKI
FT                 SAMTNFPLPQSLKALRRFLGMVGWYRKFINNFASVSAPLTDLLKPRQKFVM
FT                 TAEGEKAFAKLKEMLCSAPVLHSPDFSRPFFIHCDASKSGVGGVLVQKSDE
FT                 GDEYPLAFVSKKLNKAQKNYSVTEQECLAAIICIKRFRAYVEGHAFTVITD
FT                 HASLKWLMTQTDLHSRLARWALKLQSFDFKIEHRSGRLNVVPDALSRVNEE
FT                 ELAAIDASHGLLVELDLPEFKSDEYVELIEKVKANGEKLPDLKVVDNLVYR
FT                 RTDHATGEALHDNFNWKLWIPTKLVPEVLKKAHDDPLASHGGIHKTLERVR
FT                 RYYFWPGLIKDVKDYIQACATCKMSKAPNRIQRPPMGTSPESHRFFQRLYV
FT                 DFLGPYPRSRSGHIGIFIVLDHYTKFVFLKAVKKLTADVVIQYLQQDLFHT
FT                 FGVPETIVSDNGSQFKSDAFQKFLREYKVSHTLTAFYSPQANASERVNRSV
FT                 IAAIRAYIRTDQKDWDEQLSSICCALRSSVHSSIGTSPYYMVFGQHYVSSG
FT                 STFKLLRALRLLEDRSAVFTREDSLDLIRSKAGEVMRKQNARNERQYNLRS
FT                 REVSYAEGQEVWRRNFRQSNFVAGYNAKLAPAYVKARVKKKIGLANYDLED
FT                 LQGKYIGRYHAKDMKQ"
XX
SQ   Sequence 6666 BP; 1918 A; 1289 C; 1561 G; 1896 T; 2 other;
     tttatgaata attaagataa ttatgattat taattctttg gcgcccaaac gtgttggcca        60
     catctttaga tgtgctcaca gactcatata tacatacaca atctttttct attactattt       120
     agctatgagc tatgagaatc atttgtgggc gaaccacatt tgagcataag ccacagctac       180
     tcgcttttat tacccaaaac aaatacgttt tagttccgct gtagttcctg tcttgcgaat       240
     gggattgacg agagatttta tcatcagtaa taaatcaatc ggcctcgcaa gtcagtaatt       300
     acaaaagatt tacatctgtc ctatcaccta catttttatt tctgagccac acagagcagc       360
     ttatcagtac gcataggaca agcaggcgaa caatctttta ataagaggta gtctgaccac       420
     ggctgattgg ctgtaatgaa gggtcatgtt ttcttatacg gaagctggat cgttagtcgt       480
     ttatctgcat aggatttacg taggcattct ttttataaag aagtttacag accacagacg       540
     acggcaaaag agatacgctc cgttcttctt gaagaagggt gcaggcggta gtcgcgtgga       600
     ccgcagtcag ggattatctc ttaagcttag ccactgacca cggatgacca ccggcacagc       660
     agtgtagttg ttgttgcaat tgcgcgacaa aacttcttcg ttttccttat gttcttttgt       720
     tatagtcaaa cggtagactc ggtttgaaac caattacaca tttgcagggg aacaagctat       780
     gcttgtcggc gaaatataat atatgttttt tgtttgttta gcaatcaaat ctttctcaag       840
     ttttggaaga gttccggttg catgatttgc gttatttttc tatctattta caattacaag       900
     atttaacttt aaaaccaaag tcattagctg ttatattaat gtgttgctgc tgaaaaaagg       960
     gaagcgcaac gaacaagcag ctgataagca aagggaggtc attgaacctc gaataggcaa      1020
     gtgcaagaat agcaaaagaa caaacgcaat cgttgatatt tacattattt gggcatttga      1080
     atttttgtga tttaacgatt tgaattgatt tttgtttgat ttgccatttc atttgttcgt      1140
     ttgattgcaa taaatatttt tattagttct gatttgatat attagttact tcgtttgttt      1200
     aatttgatca ttaattttaa ctaattttta aatttatttt atgtttttgg cgattactcc      1260
     attcgtttaa ttaaattaca ctccgtctta ttaatttttt tttgatttat tgttctattt      1320
     attttcaatt tcgatgttac aattttaaat tatttttttt ctgaatttta tttatgtggt      1380
     tagattagat tatttctgta attaattatt ctgattggat ttcgatttaa tttatttatt      1440
     gtcctattta ttatcattta tttatgtgat ttgatatttt atatttctaa tatttttatt      1500
     tgtttacttt tatacattat taaataatag ttattagttg cttactawat tcattggtct      1560
     aaattggcaa aaatgccgct gtccgaggaa gagggatccg caggatcctc tcccaaatgc      1620
     atcttgtgtg aaaaatcgtt ggcatctgca tctatagtga agatcaagtg tgggcataag      1680
     tttcacaaaa attgtttcga ggtctactcc aaaaccagca acacctgtcc gatttgcaaa      1740
     gaacctcaac atcatactag gttgcagaaa cggcagaaca cgccttcaag atctgctcca      1800
     gccaacaatg aagattcggg gcaagcagaa attcctcagc agttaatagg gaacatggta      1860
     gcagaacaag tcaaggccat gcaaaatgaa ctacttacgc agctgtcgga aaaaatgtcg      1920
     cagcttatac aagccaatat agctgtgcat tttccgcaac cgcctattac cactgccaat      1980
     atagacacaa ggcgatattc agagtcggta aattttcagg ttggagggcc aacaagtatg      2040
     gtacatggct ctggaagggc aactccaaga acagaggtta ccgatcttgt gcaacgaccc      2100
     gataaagttg gccaaatact taacagttgg aagctaagat tcagtggcag tccagagggc      2160
     ctgggagttg ataatttcat atatcgggta gaggcactta cacagcagac gctagaaggg      2220
     aattttgtgg ctttatgcag caattctagt ttgctgtttg atggcaaagc gcgtgatttc      2280
     tattggcgtt ttcacaagtc cgttagggag gtacgatggg actcgctttg ctatgcgcta      2340
     cgaaagcaat ttcgggacac ccgcactgat gtggatatta gagaagctat ccgagataga      2400
     aaacaaaggg agaaagagga tttcgacaca tttcacgatg caattatgca gcttatggat      2460
     agcttagaaa cgccaatgtc tgagcgagat gtggtggaca ctctgagtag gaatttacga      2520
     ccggaaattc ggcatgaact cctgaatgtt aatgtcggca ccgtcgatcg gctgcgcgag      2580
     atttgtcggc gaagagaaag gtttttagac gacgtaaggc gaagccatag ctaccaaaag      2640
     agtatccctt ttcgcaagaa tgtctccgag ttaatcgagg aaatccattt ggatgacgca      2700
     gttgaatttt cggatgacgg agatgaagga gaaataggtg ctatggcgtt aatttgttgg      2760
     aactgtcgca aagagggtca taggtatcag gactgcgagg gaaaacgcaa aattttctgc      2820
     tttggttgtg gacgcccgaa tacttacaag ccatcttgcg taaaatgcca aaaaaaactc      2880
     caagatgagc acacagcctc gtcagcagtc gtgtgttcag cgccagaaat cgacgaaccc      2940
     agatgcgagc cagtagaaaa wgaaaactta tcacctacaa taaatttccc gaatttgtcc      3000
     gatagcattg tcagtccgtt tactccttgg ccacagttaa taaaatctaa tcagttatcc      3060
     ataaatccaa tgtcagtcag tccgaagaaa agatcgcgaa atgcaaacag gatgagagcc      3120
     ttttggcgag cagcaaaagc tgttaacgct atccgttata agaaggccga taaacgccct      3180
     tacgcagagg tgcgtttgct ggataaagta gtgttaggat tgctcgatac cggagccgca      3240
     atgagtgtgg ttgggggcaa attagctgag caaattgttg tcagtaaaat tccttttaaa      3300
     cgcgctgcat cggttgcaag cacggcggat ggcaaaaagc aagaagtaat tggccggctt      3360
     agaactcctg tgcagtacaa gcaagtaatc aaggatttag agctgcatat tattccgtcc      3420
     cttagtcagg atctttacct gggaatagat ttctggaaag aattcgatct tctgccggtt      3480
     agtatgagtg tggatgaaat atcccctgaa tcacatcaac tttcggttag ccaacaggac      3540
     atactcaagt cggtagttca acgattccca tctttcgcag tttctgggtt aggcaagacg      3600
     aacaaaatct cacatactat tgacattgga gacgcaaagc cggtgaagca aaggcatttt      3660
     cccgtctctc cggcagtgga aaggttgctg tatcaagagg tcgatcgaat gctcagctta      3720
     ggagttattg aggaatcaga tagtccctgg tcatcaccgg ttgttctggt gcagaaaccg      3780
     ggaaaaattc gtctatgctt ggatagccga aaggtcaacg cggttactaa aaaggatgcg      3840
     tatccgttgc ctcagataga tggtatctta gggcggcttc ccaaggctat gtttatatca      3900
     agtctcgatc tcaaggatgc ctactggcaa atccctctgg accctgcatc gcgtgacaaa      3960
     acggcattta ccatacccgg aaagccccta tatcaataca aagttatgcc tttcggtctc      4020
     accaacgctt ctcaaactat gactagattg atggacaagg ttattcccgc aaatctgaga      4080
     aatgaggttt tcgtgtatct ggatgacctg ctcatagtat cagatagctt tgaggctcac      4140
     atgagggtgt taggcttagt ggcgagctat gtaaaaacag cagggttaac tctcaatgtc      4200
     gagaaaagca agttctgcat gcgtactgtc aagtatctgg gccatattgt cggggagggc      4260
     gttatacgca cagatccaga taaaatatca gcgatgacaa attttccgtt accgcagtcg      4320
     ctcaaggctc tgcgccggtt cttaggcatg gttgggtggt acaggaagtt tataaataat      4380
     tttgcatctg tctccgctcc gcttactgac ctgttaaagc caagacaaaa atttgtgatg      4440
     actgctgagg gagagaaggc ttttgcgaag cttaaagaaa tgttgtgctc tgccccagtt      4500
     cttcacagtc cggattttag cagaccattt tttatacact gtgatgcgag taagtctggt      4560
     gttggtggag ttcttgtgca aaagtcggat gaaggggacg aatacccatt agctttcgtt      4620
     tcgaaaaaat tgaacaaagc acagaaaaat tattcggtga cagagcaaga gtgcctggcg      4680
     gccattattt gtataaaaag attccgagcg tatgtagaag gacacgcatt caccgtaatt      4740
     accgatcatg cgtcgctaaa gtggcttatg acccaaacgg acctccattc acgtttagct      4800
     cggtgggcct tgaaactgca gagtttcgat tttaaaatcg aacatcgtag cggaaggttg      4860
     aatgtagttc ccgatgcatt gtcgagggtg aatgaggagg aattggcggc catagacgca      4920
     agtcacgggt tgctagtaga attagatttg ccggaattca aaagcgatga atatgtggag      4980
     ctgattgaaa aggtaaaagc gaatggagaa aagcttccag atttgaaggt ggtcgacaat      5040
     ttggtgtatc gcagaaccga tcacgctacc ggcgaggcct tacacgacaa cttcaactgg      5100
     aaactttgga ttccaacgaa attagttccc gaggttctga aaaaagctca cgatgatcca      5160
     ctagcatccc acggaggcat ccacaagacc ttagaaagag ttcgaaggta ttacttttgg      5220
     ccagggttga tcaaggacgt gaaggactat atacaagctt gtgccacttg caaaatgtcg      5280
     aaagcgccga acaggattca acgtccacca atgggtacct ctccagagtc ccatagattc      5340
     ttccagagac tctacgttga ttttctagga ccatatccgc ggtctaggag tgggcacata      5400
     gggatcttca tagttttaga tcattatacg aagttcgtgt tcctaaaagc ggtaaagaaa      5460
     ctcacagcag acgtagtaat tcaatatcta cagcaggatc tattccatac gtttggagtg      5520
     ccggaaacta ttgtttctga caacggttcg caattcaaat cagatgcatt ccagaaattt      5580
     ttgcgggagt ataaagtatc gcatactctg acagcatttt attcaccgca ggctaatgct      5640
     tcggaacgcg taaatcgatc tgtgatagct gcaatccgcg catacattcg tacggaccaa      5700
     aaggactggg atgagcagct cagtagtatt tgctgcgcat tgcgatcctc tgttcattct      5760
     agcattggta cttctcccta ttatatggtg ttcgggcagc actatgtatc ttcaggctcc      5820
     acttttaagc tcttaagagc tctgcgattg ctcgaggaca ggtcagcggt gtttacacga      5880
     gaagattcgc tagatttaat tcgcagtaaa gcaggcgagg ttatgaggaa gcaaaatgcg      5940
     aggaacgaac gacaatataa tttgcggtcg agggaggtgt cgtatgcaga gggtcaggaa      6000
     gtatggcgac ggaatttcag acaaagcaat ttcgtagccg gttataacgc caagctagcc      6060
     ccagcttacg tgaaggctag ggttaagaag aaaattggcc tggctaacta tgacctggaa      6120
     gatctgcaag ggaagtatat tggacgctat catgcgaaag atatgaaaca atagttgagc      6180
     tgccttctgt gctggttgta tctgtcttgg gaatttgact cccaagtcag atctttggcg      6240
     gggggtattt gtggcacttg cggcagagct aaaactgcaa cgccatctag gtgtcatatt      6300
     gcgaggcgtg cgccacctgc ataacgcgtg aaggggttag cggcagggtc acgggtctta      6360
     cagggccaat tgtcagtttt cccagagaga gtaaaatttc tacaaatcgg gcagatgcta      6420
     ggttgccgcc ttattctggc gtcatcagca gccattctcc agttaaagat cggcggagaa      6480
     agttcgcttt gtgattgtgg gcaatttaag ccaaataagt acaagtgcta caggcgaacc      6540
     agattggcga atagcttgga ccggcggaga gctggggtaa gtggagggaa aagggctaag      6600
     agacccagat ttttatcgcc taaattttgt gcagggtttt aaaagaacca agtttaacca      6660
     gcttac                                                                 6666
//
ID   Gypsy-23_DY-LTR repbase;    DNA;    INV; 1499 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DY_;
KW   Gypsy-23_DY-I; Gypsy-23_DY-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1499
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1835-1835 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1499 BP; 506 A; 273 C; 298 G; 421 T; 1 other;
     tgatccggaa ggaagaagcg ctacagccag gcagcgccag agattgcagt ttttttttgt        60
     caggccacca aaagggaatt aaaaggcaaa gcagacaaca aatcttcggc tgcagcttct       120
     gcgaccaagg aaggcctacg gaccgcggaa gaagtagccg ccgattagtg gatttttgtc       180
     ggttggctcg cgcgcttcgc tcagcagcat gaatttataa aaattgaaaa tcgaaagaaa       240
     agtccgatcc gctcgcgaat gcgctgaacg cgatttaaaa ctaatagcta ttataagacc       300
     cgcatttagg gcaaatttaa mgaaagaaaa aatccaagga aaaagggaga aaaaccctaa       360
     ctacgggaaa agaaaagata attatgtttt agtaaattag gttaagaatt ttttttatta       420
     ttgtgaaaaa aaataatgtg caaattaatg tgaggagaag tgtccgattt ctttgttttg       480
     tgttttatgt ttgtgttcaa tttgtaagcc acacggaaaa aaaaaatgtc ccgactttaa       540
     aaggagagaa aaaaaaaata acagggataa gaatgtgtgc gagataatca ataattttta       600
     tattttaaat ccaaaaagaa aactttactc ccaatgaaat agctgccgtc gccgaaagcg       660
     ctttctccga tggaagttac caaagaaaag ggtgagtcac caaagaaaac catgttaatt       720
     atgtatgttg gccaaattaa aacgagttca gcactaaaag cattaacgta gatgtcccta       780
     ttgttttttt cccttgaaat gttcaaataa atgataacgt aaagatcata aaaggaaatg       840
     caaaagaact aaacataatc acactgagag aaatccgaga caatcgctat ttaaattcac       900
     gtatattaat gtcttgtaat ttttttttgt caatttttta tatattttta atcctcactt       960
     ttcgtgaatt ccaaaaacaa taatttattt atatgcaaaa atttatcttt ttacactttc      1020
     attcctattt atcttatatg cctagtttta agaatgttta tatgcactag taataaaatc      1080
     caatttataa tgtggtaatt ccctaagttt tcgccgcagc tagcatgagg cccttgcgaa      1140
     tagattaggt ttccgaaggg gccatcaggg aaaattatga tgataagatg gccattggta      1200
     gggcgggtca acgaaggcct ccaacaacac cggaggctgg ccgagatcgg tttggcgtaa      1260
     accattagaa catgttttcc ccttctagat gtctgtaatg tgagttctcc tacttccgga      1320
     tcaggttagc ttgtctagca cgcgaaaata agttttataa tcagaaatag gcaaatatgg      1380
     gatcgcagca agaccaccac ccccttttac cgacaagcag cagccggacc atcgctcgcg      1440
     tgcgctcgat acccatcgaa caccctgcct gacgttattc ttggatgtga tacgttaca       1499
//
ID   Gypsy-23_DYa-I repbase;    DNA;    INV; 4674 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DYa_;
KW   Gypsy-23_DYa-LTR; Gypsy-23_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4674
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 3035812 3040485.
XX
CC   'TACT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           842..3487
FT                 /product="Gypsy-23_DYa-I_1p"
FT                 /translation="MPYHNMTGGGAGLRNEKRAELCVVDEPQTSMLLRGED
FT                 FPIFFDSGAECSLVKESFAEKLSGRKVNNVVSLKGIGNANVCSTMQIDNNI
FT                 LINGNSLNVTFHVVPDVCMSNNIVLGREVLPEGYAAVVSCKGVEIIKDETK
FT                 IVKTCSKFIDNSFDIIESNVNGENKNEIITLLKSYSDSFIQGASQTRVNSG
FT                 EMQIRLIDQTKTVQRRPYRLSPSERNIVRQKVQELLDCKVIRPSSSPFASP
FT                 VLLVKKKNGSARLCVDYRELNSNTVADKFPLPLISDQIDRLRGAKFFTCLD
FT                 MASGYYQVPMHPNSVEYTALVTPDGQYKFLSMPFGLKNAPSVFQRAVIKAL
FT                 GDLAYSYVIVYMDDIMIVAPTKELALERLKIVLNILSKAGFSFNVEKCFFL
FT                 RTSVQYLGFEVRAGEIGPNNRKVESLNALPPPRSVTTLRQFIGLASCFRQF
FT                 VPGFSQLMKPLYFLTSEKNKFEWNTEHEAIRRKIIHILTNKPVLIIFDPQY
FT                 PIELHTDASAIRYGAILLHRIENKPYVVEYYSKTTSVCESKYTSYELETPA
FT                 VVNAVKHFRHYLHGRKFVIFTDCNSLKSSRNKIELLPRVYRWWAYLQSFDF
FT                 DIQYREGKRMAHADFFSRNPLPPENSPEYAKIVEKRIELTEVSEDWIRAEQ
FT                 QKDQDIVEIITKLNDDELPFELSKTYDLRGGVLYRVIQRNGKTLCLPVVPR
FT                 GFRWSVINQVHESIMHLGWEKTLDKVYDYYWFEGMAKYVRRFVENCITCRV
FT                 SKSSSGKVQMELHPIPKINVPWHTIHIDITGKLSGKSDRKEYVIVQIDAFT
FT                 KYVYLYHTFTLSAESCVMALKSSISLFGNPIRIVADQGRSFTGAKFVEFCS
FT                 SQNIKLHLIAIGASRGNGQVERVMSTLKN"
XX
SQ   Sequence 4674 BP; 1556 A; 756 C; 1080 G; 1282 T; 0 other;
     tcagaagtgg gattgtactt tcgtctacta atcatggaat accaactgcg catcttgatg        60
     gagcaccaaa gccaaagttt cctggaattg gcaaaaactt tgcaagcgtc ggtacgagaa       120
     caggcacaaa cttgagtcgt cacattgttg aaatttaacg ccgacattcc tggcgccgac       180
     gctactcaat ggtgtgctac ggttgacatt attttggttg aaaaaccgct ggaaggcagt       240
     gctctaatat tggccttaac aaaatcgttg gaaggaagct ttctgaagtg tgctacgcag       300
     gcgtgacttg gccggaattt aaacagttat ttcaacaacg ctatgcaaat actgaaacgc       360
     cagccgccat gtttttgaag ttattaaact gtcgccccgg caacagtgaa tgccttgcga       420
     tatacgctag tcgcatggtg acttcgcttg tcaacaagtg gaagggcttg gatgctgaga       480
     ggattgcggt gtccgtggtt ttgggacatt tggccaactt tgaccgccga gtgcaaagaa       540
     ttgcatacac tgccgagatc aaaaatagac gtgacctaca ggctgagttg caggtcttcg       600
     cttttgacaa gcgcacacat cattctggaa atgaggaatc tggagcaaag cgagctaagt       660
     tggcgtcact gaagtgccat ctttgcggaa agatggggca caaaatgatt gattgccgaa       720
     acaagaagca gagcgccggc atgtccagac aggatcaacg aggaagccaa ccatttcagc       780
     agcattttaa agacaatata acttgctatc gttgccgaga gcaaggtcat atagcctcac       840
     aatgccctat cataatatga caggcggtgg agctggattg cggaacgaaa agagagctga       900
     gctgtgcgtg gtggatgaac cgcagacaag tatgctgtta cgaggtgagg actttccaat       960
     ctttttcgat tctggagcag agtgctcttt ggttaaagag agttttgcag agaagctaag      1020
     cggtagaaaa gtaaataacg tagttagctt aaaaggtatc ggaaatgcaa atgtttgtag      1080
     tacaatgcag attgataaca atattcttat taatggaaat agtttaaatg taacatttca      1140
     tgttgtaccc gatgtttgta tgtcaaataa tattgtactg ggacgagaag tgttgcctga      1200
     gggatatgct gcagtagtat cttgtaaagg ggttgaaata attaaggatg aaacaaaaat      1260
     tgtaaaaacg tgctctaaat tcatagacaa ctcatttgat ataatagaaa gcaatgtaaa      1320
     tggagaaaac aaaaacgaaa taataacatt gttaaaatcc tactcagatt cttttataca      1380
     gggtgcgtct cagactcgcg tcaattctgg tgaaatgcaa attcgattga ttgatcagac      1440
     caaaacggta cagagaagac catatagatt gagtcccagc gagagaaata tagttcgaca      1500
     aaaagttcaa gaattgttag attgcaaggt tatcagaccg agtagctccc cttttgcgag      1560
     ccctgttcta ttggtgaaga agaagaatgg atcagccaga ctttgcgtgg attatagaga      1620
     attgaattcc aatacagttg ccgacaagtt tcccttgcct ttaatatctg atcagataga      1680
     caggctgcgc ggtgcaaagt ttttcacctg cttagacatg gcaagtggat attaccaagt      1740
     tcctatgcat ccgaactctg tcgaatatac ggcattagtc acccctgatg gacagtacaa      1800
     gttcctgtcg atgccattcg gactcaagaa tgcaccgtca gtttttcaaa gagcagtcat      1860
     aaaggccttg ggtgatctcg cctattcgta tgtcattgtg tatatggacg acataatgat      1920
     tgtagctcca accaaggaat tggcacttga aagactaaaa attgttttga atattttatc      1980
     aaaggctgga ttctcattta atgttgaaaa atgtttcttt ttacggactt ctgtccaata      2040
     tttaggattt gaagtacgag caggggagat tggcccaaat aatcgcaagg tagaatctct      2100
     gaatgctttg ccccctccga ggtctgtaac aacattgaga cagtttattg ggctagcatc      2160
     gtgctttcga cagtttgttc ccggattttc tcagctaatg aagcctttat attttctcac      2220
     ctcagagaaa aataagtttg agtggaatac agaacacgag gcaattcgaa gaaaaattat      2280
     tcacattctt acaaataaac ctgtcttaat tatctttgac ccgcagtatc caatcgaatt      2340
     gcataccgat gccagtgcaa tccgatatgg tgctatactc ttacacagaa ttgaaaataa      2400
     accgtatgta gtggaatatt atagcaagac aacaagtgta tgtgaatcca aatatacctc      2460
     atatgagttg gaaacacctg ccgtggttaa tgctgttaag cattttcggc actacttaca      2520
     tggcagaaag tttgtaatat tcactgactg taattcgtta aaatcatcac gaaataagat      2580
     tgagttgttg cctagagtct atcgctggtg ggcttatttg cagtccttcg attttgatat      2640
     acagtatagg gaaggcaagc gtatggccca tgctgatttc ttttccagaa atccacttcc      2700
     tccggaaaat tcccctgaat atgcaaagat cgttgagaag cgaatcgaat taactgaagt      2760
     atctgaggat tggattcgtg cagagcaaca gaaagatcaa gatattgtag aaatcattac      2820
     caagttgaac gatgatgaat taccattcga gctgtctaag acatatgatt tgagaggtgg      2880
     agttttgtat agagtgatac aaagaaatgg caagacgctg tgtttgccag tagtgcctcg      2940
     cggatttaga tggtcggtta ttaaccaagt acatgaatcc ataatgcatc tgggctggga      3000
     gaaaacactc gacaaggtat acgattacta ttggtttgag ggcatggcca aatacgttcg      3060
     aagatttgtt gaaaattgca taacgtgcag agtttccaaa tcatcctctg ggaaagtaca      3120
     aatggaatta catcctattc ccaaaataaa cgttccatgg catactatcc acatagacat      3180
     aacaggcaag cttagtggta aaagcgatcg taaggaatat gtaattgtac agatcgatgc      3240
     atttaccaag tacgtttatc tttaccacac tttcacatta agtgcagaaa gttgtgtaat      3300
     ggcgttgaaa tcatcaattt ctttgtttgg aaaccctatt cgtattgtgg cggatcaggg      3360
     aagaagtttc acaggtgcca agtttgttga attttgctct tcccaaaaca taaaactaca      3420
     tttgatagca ataggagcaa gccgaggtaa tggccaggtt gagagggtta tgagtacctt      3480
     aaaaaattaa ttgacagctg ttgaaacaag ttctagatct tggcaagagg cattgggcga      3540
     cgtgcagtta gctatttatt gtactgctaa taagataacc aaagcgagcc cgttagaatt      3600
     attaatggga aaggttgctc gtcctttagg tcttgttcca attcatgatc cagaaacaga      3660
     aatagatctg accaagataa gaactcaagc tttagaaaat atagaaagat cggcaaagtg      3720
     tgagaaggaa aggtttgata aaggcagagc taaggtagta aaatttagtt ttggagattt      3780
     tgtgttgctt aataatagtg agagaaacca gactaaatta gatgctaaat atagaggtcc      3840
     atttgagatt acagaagtat tggataatga cagatatacc ttaaagagta tgaagggtaa      3900
     tagacgttat aagtatgcgc atgaaagatt gagaagattg ccaaatgggc aggtgccaag      3960
     cgagctggag atcgatgata gcccgtcagt ggaagctgtt gaaagagaca gtagtgaagc      4020
     cgttgaaaga gacggtatgg aagttgatga aagagaaagt gaatggagat gttgaaatag      4080
     agagtagaat ggcggaaggt gtatggaagt acacagttgt cgatggctac gtggcggtac      4140
     ctgaccctag agtggtatta taatgatgtt attgtttgga aagaaaataa aaaataaaat      4200
     aaaaaaataa aagagaatga ttaaaagttg agataaaaga agagagaaat taagtaagaa      4260
     atgatacgaa tgaattgaat tgaattcaaa ttagttgaac tatggagaga aacatttaaa      4320
     gaattattaa aagaatgatt tgagttgtat tatgaaaagt taaggaatac tttgatttga      4380
     aatatgaaaa attaaaaaaa aaaaaaaaag atctttaacg aaggatttaa ggagaaagat      4440
     gtaaaacgaa atagtttaga acttgaagta ttagaacaaa tgatgaagta taacgttggt      4500
     taatgtaaac taaagattat gttaaaggaa aacaacgatg ttaatgacta agactaagac      4560
     taagttgatt gtcacattaa aattagaact gaagtcagaa tgcagtgtgt gaatctctga      4620
     tttatggcag gacgtagctc atacacgagg gcgtgtaatt tatcagaaag gccg            4674
//
ID   Gypsy-23_DYa-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_DYa_;
KW   Gypsy-23_DYa-I; Gypsy-23_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-263
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 3035549 3035811.
XX
SQ   Sequence 263 BP; 85 A; 40 C; 65 G; 73 T; 0 other;
     tgtcggagaa ggaaatgtta ttttgaaatg agcgccttat agatggttaa cttgcttacg        60
     atactaatcg ataggacggt tttggttggt atttggttgt gagatcttga catacaaaaa       120
     gatcgagtgt ggccctggtt tagcgtggtg gttcttctct aagaaaaaag ttaagaagaa       180
     acacacaagc agcggaagaa caattggaaa agctatcaag ggactcgcta cacaatcata       240
     gaacaacttt tagcgtttcg aca                                               263
//
ID   Gypsy-23_HeAr-I repbase;    DNA;    INV; 5803 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5803
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5571-5571 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..1916
FT                 /product="Gypsy-23_HeAr-I_1p"
FT                 /translation="MNISLEQLYEKLKQVRAYLIKIGPSRREGRILETKLK
FT                 EANNILREYSKWLLDFENKVTEGTIKSDDFPLYENYRKNFDLLYQEIKILC
FT                 QPVVKPQTSSNMDSFNLKTALSLLPVISDDETSVKQLIDNIRYYDSLLTKP
FT                 ECKNNLIKFILKSRLSQSAKLRLKDDYSSVEALIKDMQTELLPKKAANAIQ
FT                 NKLQKTRQNDMPISDYGKLITELFVDLTISQADGNTECYNILKPINEKQAI
FT                 KQFSDGLRNRRISTIISARNYSSLKDAIQAAQDEETSSSAAGEVMGMSNNY
FT                 SRHYHNNFRYPRGNGRNRRAFAQRGHYYGNSQRSSSWRQSNSRGQGYRGRY
FT                 NRGTFRNNYYRGNRGINRNTVNVVNEDSKPISDEPRLDKFFRE"
FT   CDS           1858..5556
FT                 /product="Gypsy-23_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LMKIRNQFQMNPDLTSFFENNQSHSILANSSSNCFIH
FT                 LLIASCNKTYSFLVDSGASLSAVTYKHAIEFNIPIHNENVIINGLGGEVQT
FT                 IGYVYVPLTINGHVFDHKFFVFNSLPVSSNGILGRDFLNRFGACLDFKHNV
FT                 LSLNLGLNETIYLPLTNNNNINVLEIPPRCESIHYIQTEFQSDCIICSQEL
FT                 QDGVYLASSVATPKNGKIPIKILNVTEQSVTLSGVQPTIYDLNDYNICSFE
FT                 KNEKNADRVKRLFSLLKLNDLNDLEFQSIQNICAKYADIFYLEGDRLTATD
FT                 IYTHNIFLKPNVSPVFSKPYRLPVSQKEEINRQISKLLKDGIIEPSKSDWS
FT                 SPILLVPKKSDGSGNKKWRLVVDYRKLNNCIEDDKYPLPDITEILESLSGS
FT                 VYFTHLDLYQGYYNVNLDKNCRKFTAFNSGQYQMTRMPMGLKTSPSSFSRM
FT                 MNLAMSGLNNEKCLIYLDDLIIFGRTLEHHNKNLQDVFERLRSVNLKLNPS
FT                 KCTFLKKQILYLGHYISNEGILPDPDKVNAVKNYPCPKNADEVKRFVAFLN
FT                 YYRKFIPKFAEIAQPLNQLCRKNTDFVWDETCQKSFETLKTCIMSPPVLDY
FT                 PDFSKENYFILQTDASNKAIGAVLSNKNGRPVAFTSRTLNKAESNYPVIEK
FT                 ELLAIVWAVKHFRAYLYGQYFKIRTDHKPLVYLFGMKDPSSRLMKFRLLLE
FT                 EYNFDVEYVKGSDNAAADALSRICLSSKELKELNENIVNVMTRAQSRKINK
FT                 PDSSSLDMVHTDLRSDQPKVVSNHVKPAESVELRMINKEELNKLRKLKVIS
FT                 KENKTFCYVDKKKIIYIKYLTSDSRMTRREFVRELDDFCKIINVNEISIIK
FT                 KEDNKQFIKKLVEEIKSMKDRTGPPIHIINNVKTIYNEDDRKVILNDFHLL
FT                 PSSGHAGMRRMVNNIKRYYYWPGLDNDVKNFVRRCDKCQRQKYSLPVKEPL
FT                 TITTTANTSFEKIYLDLVGPFEVDNDNYSYALTVQCELTKYIEAYPLISKK
FT                 ANEVAKSFVTNFILRYGVPKVITTDRGKEFIASTFQEVCKLLKINQLNSTA
FT                 YHHQSLGALEVSHKNLNAFLRIQIDSHPETWSSWLPFWSFAYNTTVHTETK
FT                 FTPYELVFGKKCSLPSNLTLDLEPLYNYDHYPCELKYRLQLSHKEARNNLI
FT                 KSKEKRKIACDKYTKPINYNKDDLVLLKNETGNKLSDLYSGPYKVVKDMPP
FT                 NVEIIKNGNNELVHKNRTKLYVQ"
XX
SQ   Sequence 5803 BP; 2052 A; 905 C; 1061 G; 1784 T; 1 other;
     tggcgaccct gcccgagaga tccacgcggc gaatatgaca ctctccgtat atggagtgga        60
     atatttcttc taagtacaat taatgaactg aattaagcta tggcgttcta tcttgtgctg       120
     cgctactgtg cattcgtgtt cgtaatttcc gaaaagttga ttaaaagtaa catctgtgaa       180
     gatgggtggt tctcaaacta aagaggagac catgatcgtg cagacagcac tgggaagtaa       240
     caaggcagca gctgaacaag tgcattatca gctcagcacc agtaacattt tgctgtgcat       300
     catcgtgcta gtactcctgc tgggttccct gtactgcgtg taccggacgt acaggcgctg       360
     tcatataaag tggattacca cggagataaa tagaaatacc ttgcgaaggt cattctttcg       420
     gcaaccacaa cttccggcag ctggtaatga ggaagaggcg actcaaccca gggcgtatta       480
     taaagtgtaa ccggttaatc agtgcctaaa agtggtgttt acgtgcgtat attacctatg       540
     tccaaaagtg cggtgttaaa agtgcgttaa aagtgtctat taatcggatg gttatgactt       600
     tcgtctacgt ctttatattt taagtcatgt attcagttta gtatgcttaa tcgtcattta       660
     atctagtaat aattattaat ataatacatg tcagttaaaa tgtatcttgt gctatgtaag       720
     tgattataat cgttatgtac tacgtttggt ggtaagttat gaatatttct ttagaacagt       780
     tatatgagaa attgaaacaa gttcgagcat atttaattaa aatcggacca agtagacgtg       840
     aaggtagaat tttagaaact aagctgaaag aggcaaataa tatattacgt gaatattcta       900
     aatggttatt agactttgaa aataaagtta cggaaggtac gattaaatct gatgattttc       960
     cattgtatga aaactatcgt aagaattttg atttgttata tcaggaaatt aaaatattgt      1020
     gtcaacctgt ggtaaaacct caaacgtcga gcaatatgga tagtttcaat ttaaaaaccg      1080
     ctctgagttt actacctgtt atctcagatg atgagacaag cgtaaaacaa ttgatagaca      1140
     atatccggta ttatgattct ttgttaacca aaccggaatg caaaaataat ttaattaaat      1200
     tcattttaaa gagtagattg tctcaatctg ctaaattacg ccttaaagat gattattcga      1260
     gtgttgaggc attgattaaa gacatgcaaa cagagttatt gccaaaaaag gccgctaatg      1320
     caattcaaaa taaattgcaa aaaacacgtc aaaatgatat gcccatttct gactatggga      1380
     agttaataac agagttgttt gttgatctca cgatatcgca agccgacgga aacactgaat      1440
     gctataacat cttaaaacct ataaatgaaa aacaagcgat aaaacagttt tccgacgggt      1500
     tacgaaatcg ccgaatcagt acgataattt ccgctcgaaa ttacagttcc ctgaaagatg      1560
     ccatacaagc tgctcaagat gaggagactt catcttcagc cgcaggagag gtgatgggta      1620
     tgtccaataa ttactctagg cattatcata ataactttag gtatccacga ggcaatggac      1680
     gtaatcggcg agcgtttgct caacgagggc actactatgg aaactcacag cgatcgagtt      1740
     catggaggca gtcgaactcg cgtggccaag gataccgagg acgttataat cgaggtacgt      1800
     ttcgtaataa ttattatcgt ggaaatcgag ggataaacag aaacacggtt aatgtagtta      1860
     atgaagattc gaaaccaatt tcagatgaac cccgacttga caagtttttt cgagaataac      1920
     caaagtcatt caattttagc caatagtagt agtaattgtt ttattcattt attgattgcg      1980
     tcatgcaata aaacttattc attcttagtt gattcgggcg cttcattatc agccgtaact      2040
     tataaacatg cgatcgaatt caacattcca atacataacg agaatgtaat tataaacgga      2100
     ttaggtggcg aagtgcaaac cattggatat gtttatgttc cattaaccat taatggacat      2160
     gtttttgacc acaagttttt tgttttcaat tcgttaccag tttcgtcgaa tggaattcta      2220
     ggtagagact tcttgaacag atttggagcg tgtttagatt tcaagcataa tgttttatct      2280
     ttaaacttag ggttgaacga aacaatttat ttgcctttga ctaacaacaa taacattaat      2340
     gttttagaaa ttccgccgcg ttgcgaatcc atacattaca ttcaaactga atttcaatcc      2400
     gattgcataa tctgctcaca agaattacaa gatggtgttt atttagccag ctcggtagcg      2460
     actcctaaaa atggaaagat acctataaag attttgaatg tgactgaaca atctgtaaca      2520
     ttgtcaggag tgcaacctac tatttacgat cttaacgatt ataatatttg cagttttgag      2580
     aaaaatgaga aaaatgctga ccgagtaaaa agattatttt ccttattgaa attaaatgat      2640
     ttaaatgact tagaatttca gagtattcag aacatttgtg caaaatatgc agatattttt      2700
     tatttagaag gcgatagatt gacagccact gatatttaca cccacaatat ttttttgaaa      2760
     ccaaatgtta gcccagtatt ttctaaacct tataggttac cagttagtca gaaagaagag      2820
     ataaatcggc aaattagtaa attattgaag gatggtatta tagaacctag taaaagtgac      2880
     tggtctagcc caatactatt ggtgcctaaa aagtctgatg gatcgggaaa taaaaaatgg      2940
     cgacttgttg tcgattatcg gaaactgaac aactgtattg aggatgacaa gtatcctcta      3000
     cccgatataa ccgaaatttt agaatcattg tctggaagtg tatatttcac gcatttagat      3060
     ttatatcaag gatattataa cgttaatttg gataaaaatt gtcgaaaatt cactgctttc      3120
     aattctggtc agtatcagat gacgagaatg cccatgggat tgaaaaccag tcccagttca      3180
     ttctcgcgaa tgatgaattt ggcgatgtca ggacttaata atgaaaagtg tctaatttat      3240
     cttgatgatt taattatttt tgggaggaca ttagaacatc ataataaaaa cttacaggat      3300
     gtttttgaaa gactcagatc cgttaattta aaattaaatc cttcaaaatg tacttttctt      3360
     aaaaaacaga tattatattt gggacattac atatctaacg aagggatatt accagatccc      3420
     gataaagtaa atgcagtaaa aaattatcct tgtccgaaaa atgccgatga agttaaaagg      3480
     ttcgtggcat tcttaaatta ctacagaaaa tttataccta agtttgctga aattgcacaa      3540
     ccattgaatc aactttgtag aaaaaacact gattttgttt gggatgaaac atgccaaaaa      3600
     tcttttgaaa cactaaaaac ctgtatcatg tcacctccag ttttagatta tccagatttt      3660
     tcaaaagaaa attattttat tttgcaaacc gatgcatcta ataaagctat tggagcagtt      3720
     ttatccaata aaaatggcag acctgtagct tttactagca gaaccctgaa taaggccgaa      3780
     tcaaactatc cggttataga aaaagagttg ttagcgatag tttgggctgt caaacatttt      3840
     agagcttact tatacggtca atactttaag atcagaactg atcataagcc gctagtctac      3900
     ttatttggca tgaaagatcc atcgagcagg cttatgaagt ttcgtttgct attagaggaa      3960
     tacaattttg acgtagaata tgtaaaaggt tcagataacg cagctgcaga tgcattgtct      4020
     agaatctgtt tgagttcgaa agaattaaaa gaattgaatg agaacattgt aaatgtcatg      4080
     acacgggctc aatcgcgaaa aataaataaa cctgattctt cctcgttgga catggtacat      4140
     actgatttaa ggtctgatca gcctaaggtc gtaagtaatc atgtmaaacc ggcagaatca      4200
     gtagaattac gtatgattaa taaagaagaa ttaaataaat tgaggaaatt aaaagtcatt      4260
     agtaaagaaa ataaaacttt ctgttatgtc gacaagaaaa agattattta tattaaatac      4320
     ctaacctctg actcacgaat gacgcgacgc gagtttgtga gagagttaga tgatttttgt      4380
     aaaataataa atgtcaatga aataagtata attaaaaagg aagataataa gcaatttatt      4440
     aaaaaactag tcgaagaaat aaaatctatg aaagatagga ccggtccacc tatacatata      4500
     ataaataatg taaagacaat ttataatgaa gatgacagaa aagttatatt aaacgacttc      4560
     catctcctac ctagcagtgg ccatgcaggt atgagaagga tggtcaataa cattaaaagg      4620
     tactattatt ggccagggtt agataacgat gttaagaact ttgttaggcg ttgtgacaaa      4680
     tgccagcgtc aaaaatattc gttacccgta aaagagccat taacaataac aacgacagct      4740
     aacacatctt ttgaaaagat atatttagat ctagtgggtc catttgaagt tgataacgat      4800
     aattattctt atgctttaac tgtacaatgc gaactaacta aatatataga agcgtatccc      4860
     ttaatttcta aaaaagctaa tgaggtagct aaaagttttg tgactaactt tattcttagg      4920
     tatggagtac cgaaagtaat aactacagac agagggaaag agttcatcgc atctacattc      4980
     caagaggtat gtaaattact taaaatcaat cagttaaact cgactgcgta ccaccaccag      5040
     tcattaggag cgttagaagt gtcacataaa aatttaaatg cttttcttcg cattcaaatt      5100
     gatagtcacc ctgagacttg gagcagttgg ttaccttttt ggtcgtttgc atataacacg      5160
     acagtgcata cagagacaaa atttactccg tatgaacttg tttttggtaa aaaatgctca      5220
     ctaccaagta atttgactct tgatttagaa ccactgtaca actacgatca ctatccatgt      5280
     gagctcaaat acaggttgca actatcacat aaagaggcga ggaataattt aataaagtct      5340
     aaagaaaaga gaaaaattgc atgtgataaa tatactaagc caataaacta taataaagat      5400
     gatttagtac tcttgaaaaa tgagacagga aataaattaa gtgatttgta ctctggtcca      5460
     tataaagtag tcaaagatat gccaccaaat gtagaaataa tcaaaaatgg taataatgaa      5520
     ttagtgcata aaaatcgcac aaaattatat gtccaataac atataattca aatgtaatac      5580
     ctacttactg ttttgtctaa gtacagttta ctgttaatgt tttattttat gttctatctt      5640
     attcatgtta atcaatcttt ataagaaatg taatcttatg taaacataac attttgtatt      5700
     ttatataaaa aaaaaactta ttatacttat attgtactgt ttaaatgtca aaaaaaaaat      5760
     attcctatat tgtcatattt ttttttttct ttcggatgga agg                        5803
//
ID   Gypsy-23_HeAr-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-141
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5601-5601 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 141 BP; 47 A; 26 C; 20 G; 48 T; 0 other;
     tgtagtagta tctaagttgt agtagtaata agtatacata cacgtgtaat cctatcaata        60
     taacccaaat tattattata ataaaggcag tcttaaatca tcattcggtc gtttaactca       120
     tctcctggca tgcgccttac a                                                 141
//
ID   Gypsy-23_LH-I repbase;    DNA;    INV; 5112 BP.
XX
AC   ADOQ01018090;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_LH_;
KW   Gypsy-23_LH-LTR; Gypsy-23_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5112
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01018090; Positions    7106    1995.
XX
CC   Positions [2367-2789] - Reverse transcriptase
CC   Positions [3837-4286] - Integrase core
CC   'GTAG' target site duplication
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2283..4286
FT                 /product="Gypsy-23_LH-I_1p"
FT                 /translation="MRRGIIKTSISPYCARVVPVRKKNGTMRLCIDLRPLN
FT                 ERVVKQKYPFPLIEDCLARLGNKKVFSLLDLKDGFHQIKVHPQHTKYFAFA
FT                 TPDGQFEFTRLPFGFCEAPAEFQKRLIQIFQPLIRDDKVIVYIDDILIPSV
FT                 SIEDNLTTLKQVLLLLKQYNFQLNFKKCLFLKKQIEYLGYILSLDGITISP
FT                 RHTKAVYDFPQPRKMVEVQRFLGLTNYFRKFIKDTIKARLLQNLVRKSVDF
FT                 VFDEDCLCAFQTLKEELISSPILRLYNPYAVTELHTDASAVALAAILFQRQ
FT                 NSGQWSPIAYYSQATNSAEAKYHSFELEMLAVLKAIERFHIYLYGLEFTLV
FT                 TDCHALAYAINKTHLNPRIARWTLRLQNYRFKVVHRAGHKMAHVDALSRVA
FT                 YMNALSLERELELKQLLDPRLREIAKQLEFSDNEKFELIEGLVYRKGPDKP
FT                 RFAVPEPMIDNVIRVYHNDIIHCGIEKTVHGVSTHYWFPSLRKRVHEFIDN
FT                 CLDCLMSNTSVNSREGELQITETPSQPFQILHTDHFGPLKETPDGQKHILL
FT                 VIDAFTRFTWFFAVKTTASREVIKHFALLFRIFGNPKVIVSDRGTAFTSQE
FT                 FSEFLRSRKIVQRLVAVAVPWANRLAERSNRFLKSSLKKLVDEGQDWSSCL
FT                 DTIQYVVNNTLHSFLKSEG"
XX
SQ   Sequence 5112 BP; 1482 A; 1030 C; 1103 G; 1497 T; 0 other;
     gctcagaagt gggataaagg aatcatagta aagtgacggg atggacaatt gtattttcgc        60
     cttagctagt gcgtgcgaca cgtggtaagt gcatcgccat ttttgaccgc gtcgttcatt       120
     gtgttaatca cgcgatcgtg gctcgcaccg ccatattgtg tattcgtgcg cgggaaggac       180
     tcccattggc tgcacgcaca tcattgctaa ctaacattgt ttgtagtttc cgtaagtgtt       240
     ggtgactcgt ccggcattgc gtcgcgagta ttggacatat agtaacgcca tattttggtt       300
     cggcgtttgg acgcgagtgt agtaacgttg cgtgaagaga ctcacaacac acgtcacgcc       360
     atttttcttc cagtcatgga tcgacgtcgt ttggaagggc tctccacaaa gaaactaaga       420
     cgtgaagtct tgaggtatag gttaaccccc gaagctaccc atgaagcttt agtcaagcag       480
     cttgtgacac atctcgaaag caatggaccg ctaagagacg agtgttttga cgcgtctgct       540
     ggactcgctt cttcatcaat gaacagagcg gactcattat cttctgaatc ggtgcatgaa       600
     ggatttacta ctgcttcagt ccatccacaa gtggattcag agcaggtctc acctcagtgg       660
     ttcaagatgt tcgcagatct caagcgtcaa caggaagaga tgatggtgca gttcactcaa       720
     ctggtcgcta ccgtcaatcg gagaggaaat gatacaagtg catctcctcc atcggcatcg       780
     tctagttcta cagacagttc tggtgcgcgt tccagtgttc caggccgtga tggcggtaca       840
     gtgatggcca ccatgcccac agctcaagcc gttacgctat tggcatcgca gattccatgt       900
     tttagtggat ccgaggatga taatgtgaat ttgtggttgc agaaggtcga gcgagttgct       960
     cgaatacacg gagtcgctga cgaagtaatt cttctggcgg tctccagcaa gctcaccaaa      1020
     ttggctcgag attggttcga cttaaatact ggtacaatca acgaaacttg gtccagcttt      1080
     aaacaagcga ttcataaaag gtttaagagg acagtgccgt atcaggtggc aatgcataag      1140
     gccgaaaatc gcaagtagtt gtccggtaag gaatcgtttc acgaatatgc agcacataaa      1200
     ttgaagctgt tacaaaacct caatctcccg gaaaaagaag ccatcaactt tttgattagc      1260
     ggaatcacca atcagccact gcgtggcatg gctacactta tgggcgctga gtctacagat      1320
     aaatttctgg aacaaatgca tggactcacg atgtcctatg gtgatacgaa tagacgttcg      1380
     ccgccacctt acaagaagtt tgacgacaat aaagcaaaag gaccagttgc atcaaaagaa      1440
     aagtctactg actcgtcgaa ggacattttt tgtgtttact gccgtacaaa agggcacctc      1500
     agagcggact gtttccggct caagaagaag gaacaagcca agcagacttc gtcgctttct      1560
     tctggcgctg cggttgcggt cgaggactcc ccgtcttcta gttcaacggt tgcgctggtg      1620
     aataatcata ggttagaggt ttccgatcca gttcttaagg tagtaaaatt taatgatatt      1680
     acttgtgata taaagtctct tttggattcc ggtagtccgg tgtcgttcat tcatccgcgt      1740
     ttaattaacg aatttaaata tcaaccaatt aaggtaattg aaaattcggt ttcccattta      1800
     aagccattaa tggcacagcc attccggttc ttgggtctat tgcggtgaac atccaattaa      1860
     aagagcttcc tgatgtcact cttgtttcag agctttatgt aattaaagat aaacagtttt      1920
     ctgccgactt atctttgggt agagatttta ttttgaaaaa taacctcacc gttgtgtata      1980
     gaccggtaga gggtgtcaac gatacagtta aattattttc agaggtcgct tccgctgaaa      2040
     ccgtttatga tccttctgat cgattagaat caattataac agatatcaat attgatttcg      2100
     atgaggatat aaagcgaaaa ctgatcacgg tgataaaaga aagcgaagaa tcgccggttg      2160
     agcatgtcga cgacggtcac gcagttacgg tagcgcttaa ggataattct acctacgcgt      2220
     atacgcctag acgttttgct tggtccgaga ggattcaaat tcgcgatatc actgatgact      2280
     taatgcgacg cggcattatt aaaacaagta tttctcccta ttgcgcgaga gttgtgccag      2340
     ttcgtaagaa gaacggtact atgcgtttgt gtatagactt acgtccgtta aatgagcggg      2400
     tcgtcaagca gaagtatccg tttccactca ttgaggattg cttagcgcgt ttgggtaata      2460
     aaaaggtctt ttctctacta gacctcaaag atggtttcca tcaaattaag gtgcatccac      2520
     agcacactaa gtattttgct tttgcgacgc ccgatggtca atttgaattc acccgacttc      2580
     cttttgggtt ctgtgaggct cccgccgagt tccagaagcg gcttattcaa attttccaac      2640
     cattaattcg ggatgacaag gttatcgtct atatcgacga cattttaatt ccttcggtct      2700
     ccatagaaga caatttgact acactaaaac aagttttatt attgctcaag caatataact      2760
     ttcagttaaa ttttaaaaaa tgccttttcc ttaaaaaaca aatagagtat ttagggtaca      2820
     ttttgtcgct tgatggaatt actataagtc cacggcacac taaggcagtt tatgattttc      2880
     ctcaaccacg taagatggtg gaagtacagc gtttccttgg tcttacaaac tacttcagga      2940
     aatttatcaa ggatacgatt aaagctagac ttttacaaaa tctggtgcgc aaatcagttg      3000
     atttcgtttt cgacgaagat tgtctttgcg cgtttcaaac gcttaaggaa gaattgattt      3060
     cctcgccaat tttacgacta tataacccgt atgcggtcac tgagttgcat acagacgcaa      3120
     gtgctgtagc gctcgccgcc atattgttcc aacgacagaa ttctggccag tggtcaccca      3180
     tagcctacta tagtcaggca accaacagtg ccgaagccaa atatcatagc ttcgagctgg      3240
     aaatgttggc agttttgaag gccattgagc ggtttcatat ctacctttat ggcttggagt      3300
     ttactctcgt tacggactgt catgccttag cgtacgcgat aaataaaaca caccttaacc      3360
     cgcgaattgc aaggtggaca cttcgattac aaaattatcg attcaaggtc gtacatcgag      3420
     ccggccataa aatggcgcat gtagatgcct taagtagagt agcttatatg aacgctttgt      3480
     ctctcgaaag agagcttgaa ctcaagcaat tgttggatcc tcggcttaga gaaattgcca      3540
     aacaattaga attttcagat aacgaaaagt ttgaattaat tgaaggtttg gtgtatagaa      3600
     agggtccgga taagcctcgg tttgcggtcc ccgaaccaat gatcgacaac gtcattcgcg      3660
     tttatcacaa tgatataatt cactgcggga ttgagaaaac tgtccatggt gtttcgacac      3720
     attattggtt tccgtcattg cgcaaacgag ttcatgaatt tattgataat tgtttggatt      3780
     gtttaatgtc aaatacttcg gtaaattcca gagagggtga gttacagatc actgagaccc      3840
     cctcacaacc ttttcagatt ctccacaccg accatttcgg tccacttaaa gagacacccg      3900
     acggacaaaa acatatctta ttagtaatcg atgcatttac tcgattcaca tggtttttcg      3960
     ccgttaaaac tactgcctcc agggaggtta tcaagcattt tgccttgctt ttccgtattt      4020
     ttggcaaccc caaggtaatt gtttcagaca gaggcactgc ctttacttcc caggaatttt      4080
     ctgaattcct ccgttctaga aaaatcgtac aacgactcgt tgccgttgca gttccatggg      4140
     cgaacagatt ggccgaacga tcaaatcgat ttttgaaatc atcattaaag aaactcgttg      4200
     atgaagggca ggattggagt tcctgtttgg atactatcca gtatgttgta aacaacaccc      4260
     ttcactcttt tcttaagagt gaagggtgaa ctctccttcc aagctgttac tgggttttga      4320
     tcagagaaat cacgctgaca gtattctaat tcaacgtctc tatgagatcg cagaagtcga      4380
     atttgatttt gatcaggaga gagaattaag tcgtaaatta gcactagatg tagctgaaaa      4440
     aatcaaaagc tataataagt caatatgata agaaacataa gaaacctacg gcttacaagc      4500
     caggagatct tgttttgatt agagatacat caataaagcc aggcaaagat aaaaaattaa      4560
     agcctagcta caaaggacct tataaagtta caaaggttct ggataaaaat cggtttgtga      4620
     ttcaagatat ccccggatca agcctaacgt ctagatcgta taattcgatt ctgtcaccag      4680
     atcgtttaaa actctggatt aaaccgccgg ttgaatcgcc gatcgaatca aattagtatt      4740
     aagaaataaa tcttgcgtta acattaagtt tctgaaattt tatatgtata ccgaagataa      4800
     gactgcgata tatatattat gtattagttt tacaatactc tgtattaaga aaatagcgta      4860
     cctgttagaa taagtttacg ttgcgagaat ataaactata aatttaaatt agtgtataag      4920
     aaaatttctt tgtgattaat ttttttatat agggttaaaa ataccaaagt ttataagcgt      4980
     tttctgcgtt tatggttacc cttgaccaaa aattatggtt gtttataatt aaatatttta      5040
     tttgtttatc ttttcataag cagtattgta agtggtcgtt cgggacgaac gatactttca      5100
     ggatgaccga ac                                                          5112
//
ID   Gypsy-23_LH-LTR repbase;    DNA;    INV; 488 BP.
XX
AC   ADOQ01018090;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_LH_;
KW   Gypsy-23_LH-I; Gypsy-23_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-488
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01018090; Positions    1994    1507.
XX
SQ   Sequence 488 BP; 115 A; 104 C; 103 G; 166 T; 0 other;
     tgtaagagag aacttgtcca cccatatgtt atctttctta cacacattta ctttttcttt        60
     ctcacacatt atgtattgcg cgcgttgcgg ttgtcgagcg cctgattggt tgagtggcgc       120
     tgcgctacaa gaagcgccag cgtgctcgtc gatgattggt ccaaggatga tgcaaccagc       180
     cgggacatac gagtctcggt gatcgcgtct cggggcattg tgcattagta cgtgtaacaa       240
     gacacacgtg tttatatctt tataataaag atttatcagt gatggtgata tacttgtttt       300
     tagtgcctgt catcccttcg ttcctcattt cggctaaaag attatcctga cgtaatacac       360
     gttttattcg tccgagtatt tttaatcgtt cacgtgcatt cgcgtcgcgc ctcaagagtt       420
     ttactttagc ggacattgtg tatttaaaga acaatctcaa gctttattat tacagctata       480
     ttcttaca                                                                488
//
ID   Gypsy-23_LMi-I repbase;    DNA;    INV; 4057 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4057
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(848..2116,2002..2460,2348..2947,2946..3272,
FT                 3203..3685)
FT                 /product="Gypsy-23_LMi-I_1p"
FT                 /translation="MSEPMLVSTTSRSKFQQAVKLKRSTLAAASDRSNFSR
FT                 RLFLTDRSSGRRYLVDTGADISVIPPSDSDRRRKTDRKLYAANGTCINIYG
FT                 ERLLVLNLGLRRNFTWNFVIGDVQSPIIGADFIHYDLLVDLKNRRLIDPLT
FT                 SAATPGTLIKVSGIETVHVMPPDQKHADILKKFPSLLHENIHFDIPDTTVF
FT                 HTIVTEGHPVAAKARRLPPHKLKAAKAEFQQMINMKICQPSKSAWSSPLHL
FT                 VPKKDGSWRPCGDYRALNDITKPDRYPIPNLQDFNSQLHGKQIFSKIDLVR
FT                 AYHHIPVHPDDVPKTAVITPFGLFEFLRLPFGLRNAAQTFQRYIDNILRDL
FT                 DFVYCYIDDILVASQDEEEHKKHLQLLFERLSKFNIRINLNKCIFGSTEVP
FT                 FLGYMVAAEGIRPLPERVQTLLTIRYLQQMHFRFNRSTFSGIYGSCRRNQT
FT                 TTRASTNIVDYPLPTTIKELRRFLGLINFYRRALPNSAGKQADLLNLLHGT
FT                 KKNDKRKINWTENLRQAFNDLKNSLVDSALLAHPSSSLPLILMVDASDYAI
FT                 GASLQQIKSATISILLQETIKSRKELLNLWLTPQIMLLVHLYNKLNLQPLA
FT                 FFSKKLSKAERNYSTYDRELLAAYSAVKHFQYMLEGRDFPIYTDHKPLTFV
FT                 FKQRPDKASPRQIRHISFIGQFTTDIRYTTGKENIAADACSRIASITIPPT
FT                 VTLEQIAESQQCDEELPHIKNTTSLALQTIMLPNGRELVCDMSEDMIRPYV
FT                 PQQLRQAIFNSLHDLAHPGVQATLIFSEKTLHLAITKKGREDLDFNMYSLP
FT                 RSKVWRHTNSAVGHYPPTTARFSHINIDIVGPLPPSQGYRYLLTVIDRFSR
FT                 WPEAVPLADITAETVSFAMSQHGYLVLVCLKSHHSRNSFICHVSTWISRFG
FT                 VPQIITTDRGRQFECQLFKCLTSTLGIVHIKTTAYHPAANGKIERWHRQLK
FT                 SALKAQMSDDWVSKLPLVLLGLRSYIIPQVNTSPAEMTYGSAIRLPGAFLN
FT                 EQKLVTDIPTFVFKLKEQMRSLRPVPAEHHAHKKIFIHPN"
XX
SQ   Sequence 4057 BP; 1299 A; 963 C; 769 G; 1026 T; 0 other;
     ttggtgacgc cgacgtgatt aatacggagc ggaacgcatt tttaatttgt gaagtgcaaa        60
     aatgaccgac aacggcaacg acgcaaattc acgcctacat cagcatggga cgaagcgggt       120
     attgctcgtg tttcagtgaa gattccgccc atctggaaga aaaacataaa ggtatggttt       180
     cttcaaattg aagctcagtt taccacgttg ggtatcacta acgaaaccac gaaatttaat       240
     catgttgtgg catcattaga gcggatgttg tggaattaat ttccgacttt ttaactcgac       300
     cattatctac cactccattc acagagctta aaacaagatt aattcaggaa tttgaagagt       360
     cagaaaatag aaaaacaaaa ttattaacag aactggaatt aggtgataag aagccaactc       420
     agctgttacg tgagatgcga actttagctg gtatacaagt caaggacgat tttttgaaaa       480
     ccatatttat gcagcggctt cctgttaccg cacgttctat actagctaca agtagagaga       540
     tcttgatacc atagccgcat ggctgacaag attgttgaat tttcacaccc aggatcaaat       600
     atttgtgctc aaacattgca ggcatcatcc agtattgcag cagtaaaata aatgatgcaa       660
     ataacgacag tatctcaaga ctagaaaagc agatcgccga attaacgctg actgtcaatg       720
     aattgaaaac acagtcacgt tcaagaagca gctcacgttc atctcgttcc tcacgaagta       780
     gatcacgaga caggtcctaa tgggcactat gttggtatca ctttaaatat cgccacaggg       840
     caaagaaatg tcagagccca tgctcgtatc aaccacctcc cgctcaaaat tccaacaagc       900
     agtcaaactc aaacgctcca cattagcggc ggcaagtgat cggagcaatt tttcacgccg       960
     cctatttctc acagacagaa gtagcggaag acgttaccta gtcgacaccg gagctgacat      1020
     ttctgtgatt ccgccttcgg atagtgaccg ccgaagaaaa acagatcgta aactttatgc      1080
     agcaaacggc acttgtatta atatttacgg agagcgtcta ttagtactca atttgggttt      1140
     acggcgcaat ttcacgtgga atttcgtaat tggagatgtg caatcgccga ttatcggagc      1200
     cgacttcatt cattacgatc ttttagtaga tctcaagaac aggcgactaa tcgacccatt      1260
     aacgtcagca gcaacacctg gcacactgat taaagtctcg ggcatagaaa cagttcatgt      1320
     aatgcctcca gatcaaaaac atgctgacat tctaaagaaa tttcccagct tgcttcatga      1380
     aaacatccat tttgacattc cagataccac tgtttttcat acgattgtca cagaaggaca      1440
     tcctgtagca gcaaaggcac gacgactacc accacataaa ctcaaggcag ctaaagcaga      1500
     gttccaacaa atgattaata tgaaaatctg ccagccgtca aagagcgcct ggtcaagtcc      1560
     cctccattta gttcccaaga aagacggatc ctggaggcct tgcggagatt accgtgctct      1620
     caacgacatc accaagcctg acagatatcc tattcctaac cttcaagatt ttaacagtca      1680
     actgcatgga aaacaaatat tttcaaagat agatctggtc agagcttatc atcacatccc      1740
     tgtacatcca gacgatgtac ctaagacagc agtgataact ccatttggtt tgtttgaatt      1800
     tttgcgactt ccatttggac tccgaaacgc ggctcaaact tttcaaagat atatcgacaa      1860
     tatactgaga gacctcgatt ttgtgtactg ttatatagat gacattctag tggcatcaca      1920
     agatgaagaa gagcacaaga agcatcttca attgcttttc gaacgcctca gtaagttcaa      1980
     catcagaatc aatctgaata aatgcatttt cggttcaaca gaagtacctt ttctgggata      2040
     tatggtagct gcagaaggaa tcagaccact accagagcga gtacaaacat tgttgactat      2100
     ccgctaccta caacaataaa agaactgcgc cgatttcttg gcctcattaa tttttaccga      2160
     agagcactac caaattcagc cggtaaacaa gcagatcttt tgaacctcct ccatgggacg      2220
     aagaaaaatg ataagaggaa aattaattgg acagaaaatc ttcgacaagc ctttaatgac      2280
     ctgaaaaata gcttggttga ttcagcactt ctggctcatc catcttcaag tttaccttta      2340
     attttaatgg ttgacgcctc agattatgct attggtgcat ctttacaaca aattaaatct      2400
     gcaaccatta gcattcttct ccaagaaact atcaaaagca gaaaggaatt actcaaccta      2460
     tgacagagaa ctcctcgctg cctactcagc cgtgaagcac tttcagtaca tgcttgaagg      2520
     acgagatttt ccgatttaca ccgaccacaa gccactcacc ttcgtgttca agcaacgtcc      2580
     agacaaagct tctccacgtc agatccgaca cattagtttc atcggacagt tcaccacaga      2640
     catacgttac actacgggga aggagaacat cgcagctgac gcctgttcac gaattgcttc      2700
     aatcactata cctccaactg ttaccttgga acaaattgca gaaagccaac aatgtgacga      2760
     agagcttcca cacattaaga atacgacatc ccttgcactt caaacaataa tgttgccaaa      2820
     tggtagagaa cttgtttgtg acatgtctga agatatgatt cgcccatacg taccccaaca      2880
     actacgacag gcaattttca actcactaca cgatctagct catcctggtg ttcaagcaac      2940
     attaatttag tgagaaaaca cttcatttgg ccatcactaa aaaaggacgt gaagacctgg      3000
     acttcaacat gtattccttg ccaagaagta aagtctggcg acacaccaat agtgcagtgg      3060
     gacattatcc accaacgaca gcaagattca gtcacattaa catagatatt gttggacccc      3120
     tacctccatc acagggatat cgctatttac taacagtcat tgatcgtttc tctcgatggc      3180
     cagaagcagt tccattagct gacatcacag cagaaacagt ttcatttgcc atgtctcaac      3240
     atggatatct cgttttggtg tgcctcaaat cataactact gatcgcggaa ggcagtttga      3300
     gtgtcaactt ttcaaatgtc tcacaagcac actgggcatt gtccacatta aaactacagc      3360
     atatcatcct gcagcaaatg gaaaaattga acgctggcac cgtcagttaa aatctgcttt      3420
     aaaagcacaa atgtctgatg attgggtttc gaagcttcct ctggtcttgt taggacttcg      3480
     ctcctacata attccgcaag tcaatacctc accagcggaa atgacttatg gttcagcaat      3540
     taggttacca ggagcatttc tcaatgaaca gaaattagta actgacatcc caaccttcgt      3600
     cttcaaattg aaggaacaga tgagaagcct aagaccagtt ccagcagaac atcacgccca      3660
     caaaaagatc tttattcacc ccaactgatg acaagcaagt ttgtttttgt gcgacatgat      3720
     gctgtccgaa caccgcttca gccaacatat gacgggccat atccagtctt gtctcgcagt      3780
     gacaagcact ttgaggtgga gatgccaaca ggaaaacaaa ctattagcat tgacagattg      3840
     aaacctgcct ttcttctgac agactattca tcggacaaca tggaagacac atcaagagaa      3900
     accactccga cattccgtca cattccatcc caaagactat caaccttcag aagacaacag      3960
     acagcaatca acccagtgca ccttcaccac gggtcaccag atcaggtcga caggtcactt      4020
     ccctcgaaaa tacatggacg ctgtcactgc ggaggga                               4057
//
ID   Gypsy-23_LMi-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-189
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 189 BP; 50 A; 36 C; 23 G; 80 T; 0 other;
     tgttgtggcg gacccgagtg ttaagctatg taaattatat ctctgaactt cattcacttt        60
     tattacttca aatgttttta attcgttttc tgttcttgtt tcttttctgc aatgttttga       120
     gtgacaatta aaagttataa acacatcctt tctctccttt atgaaccttt tacacaaacc       180
     ataaccata                                                               189
//
ID   Gypsy-23_MoPha-I repbase;    DNA;    INV; 3937 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-3937
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1102-1102 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..821
FT                 /product="Gypsy-23_MoPha-I_1p"
FT                 /translation="MEPAELTSAECAPINRVTIKIPPFWADEPELWFAQLE
FT                 GQFTLGRITSDETKYAYVLAQVDTKQAKEIKDLITQPPEKNKYESIKRALI
FT                 QRLSISQEQQIRQLLEHEEMGDRRPSQFLRHLQSLASSAISEQLLRTLWMG
FT                 RLPSQLQAILATRTADNLEVVAEQADRIYEITCRTAVVASTQATTTEQTME
FT                 QQIKILAQQVASLNSRLTQSLQKDRRRSRSRTRSVNHKEEKNSDGVCFYHK
FT                 RFKDKAKKCVKPCSFKKEEN"
FT   CDS           761..3916
FT                 /product="Gypsy-23_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EIQGQGKEMCKAMLVQKRGKLEGQSLAAANGPCPGIS
FT                 RLFVTDRSTKIRYLIDTGSDVSVYPRSMIRRQRLFSTQELYAANGSRIMTY
FT                 GYITIQPNLGLRRAFLWRFIIADVTTPIIGSDFLAHFHLLPDVKKGQLIDA
FT                 KTGLTAKGSANRTNANSVKAMTGNTPFHQLLARFPRITQSTRTQAQKHPHT
FT                 TVHHIKTNSGPPEACKPRRLAPDKLKIAKAEFNLLLEEGIIRPSKSPWAAP
FT                 LHMAPKKENAWRPCGDYRRLNTRTVPDRYPIPHIEDFAQSLEGKKIFSTLD
FT                 LVRAYNQIPVHPEDIPKTAITTPFGLFEFCYMPFGLRNAAQTFQRFINEVT
FT                 HGLEFCYTYIDDILVASETEEEHMKHLEQLFRRLEEYGIQLNPNKCVFGKK
FT                 QIKFLGYSVSEEGTQPLPEKVQAIREFKKPETVKQMRQFLGTINFYRRFIP
FT                 KAAQDQAKLQDVLKGPKTKGRTPIEWTPQLEHAFQKCKDSLTRATLLAHPK
FT                 SEATITLTTDASDTAIGAVVHQVINGEQQPLAFMSKKLNQAQTKYSPYDRE
FT                 LLAVYGAVKYFRHLLEGRTFTIYTDHKPLIYAFQQDVLRSSPRQARHLDFI
FT                 SQFSTDIRHVAGKDNVVADALSRVEAIQTAPDFETLAKSQNEDTELKKILD
FT                 GTTQHSLKLEKVQIPGSTTTIVCDTTMPIKRPYVTKPFRQQVFRALHGLSH
FT                 PGVKATARLIKDRYVWPNIQQDCRTWARSCIPCQKAKVFKHTVSPTGSFSN
FT                 PTRRFEHIHMDIVGPMPTSMGYKYCLTIIDRFTRWPEAIPIPDISAETIAR
FT                 QLMTNWIARYGTPARITTDQGRQFESDLFKQLTKLTGSNHIRTTAYHPAAN
FT                 GMIERFHRQMKASIKCHQTEEWADILPVVLMGIRASWKEDLQATPAEMVYG
FT                 EPIRLPGQFLGEANTTKSTEGFAAKLGKTMRSLQPKLRKHGEKATFVHKDL
FT                 STAQQVFLRHDALRGTLQPTYDGPYHVLNRGEKTYKLRINGRVVNVSIDRL
FT                 KPAYILAQEEATTEESKSTPMPLPSSTPTHTRSGRLSRQPVRFEGV"
XX
SQ   Sequence 3937 BP; 1379 A; 938 C; 826 G; 794 T; 0 other;
     aattggtgac cccgacgtga tcagaatatt tcaccgcaat ggagccggca gaactaacaa        60
     gtgccgaatg cgccccgatc aacagagtga ccataaaaat acctcctttt tgggctgatg       120
     aacccgagtt atggtttgcc caactcgaag gacaattcac acttggtaga attacgagtg       180
     atgagactaa atacgcatac gtactggcac aagtcgacac gaaacaagcc aaagaaataa       240
     aagatctcat cactcaaccg ccagagaaga acaaatacga gagcattaaa agggcattaa       300
     tacaacgatt gtcgatatct caggagcaac agatccgaca gctcttagaa cacgaagaga       360
     tgggagatag aagaccatca cagtttttaa gacacttaca atcgttagca agttcggcta       420
     tttcagagca attattacgc acattatgga tgggcagact accatcccaa ctacaagcca       480
     ttctcgctac tcgtacagcg gacaatttag aggtagtggc tgaacaagcc gatagaatat       540
     acgagataac ctgcagaacg gcagtggtag caagcactca ggcgaccacg accgagcaaa       600
     caatggagca acaaataaaa attctggcgc aacaagtagc cagcctcaac agtcgattga       660
     cacagtcact acagaaagat agaagaagaa gccgttctag aactcgttcc gttaaccaca       720
     aggaagagaa gaattccgac ggagtatgct tttaccataa gagattcaag gacaaggcaa       780
     agaaatgtgt aaagccatgc tcgttcaaaa aagaggaaaa ctagaggggc agtcgttagc       840
     agcggcgaac ggcccctgcc caggaataag ccgcttattt gtcactgatc gtagcactaa       900
     aatacgatac ttaatagaca ccggctctga tgtcagcgtt tatcctcgtt caatgatacg       960
     aaggcaacga ttgttcagca cacaagagct ctatgcggcg aacggatccc gcatcatgac      1020
     atatggctat atcactattc aaccaaactt ggggttacgc cgcgccttct tatggcgctt      1080
     tataatcgca gatgtcacaa cgcctataat aggatccgat ttcttggcac attttcacct      1140
     attaccggat gtaaaaaagg gacagttaat agacgcaaaa acagggctga cagcaaaagg      1200
     ctcagctaat agaaccaacg ccaattcggt gaaagccatg acaggcaaca cccccttcca      1260
     tcaactatta gcaagatttc cgcggatcac tcagtcaaca agaacgcagg cacagaagca      1320
     cccgcacacg actgtgcacc atataaagac taattcaggc ccaccagaag cgtgtaagcc      1380
     tcgtagactg gcaccggata aattaaaaat agccaaagct gaatttaatc tcctgcttga      1440
     agaagggatc attcgtccat ctaaaagccc atgggccgca ccacttcaca tggcacctaa      1500
     gaaagaaaat gcctggagac catgcggcga ctatcggaga ctgaatacaa gaacagtgcc      1560
     tgaccgctat ccgattccac atatcgaaga ttttgcacaa tccttagaag gaaagaaaat      1620
     tttctccacg ctggacttag tcagagctta caaccaaatt ccggtacatc cagaagacat      1680
     tccgaaaacg gctatcacca caccctttgg attatttgaa ttctgctaca tgccattcgg      1740
     attaagaaac gctgcacaaa cctttcaaag gtttataaat gaggtcacac acgggctgga      1800
     attttgttat acatacatag acgacatatt agtcgcttca gaaacagaag aagaacacat      1860
     gaaacatttg gaacaactgt ttcgccgttt agaagaatac ggcatacagc tgaatcccaa      1920
     caaatgcgtg ttcggcaaga aacaaataaa attcctagga tattcggtat ctgaagaagg      1980
     aactcaacct ttaccagaaa aggtccaggc aatccgggaa ttcaaaaaac cggaaacggt      2040
     gaaacaaatg agacagttcc taggaacaat aaatttctat agaagattca ttccgaaagc      2100
     agctcaggac caagccaaat tgcaagacgt cttgaaagga cccaaaacaa aaggaagaac      2160
     gcctatagaa tggacaccgc aactagagca cgcctttcaa aagtgcaaag atagcttgac      2220
     gagagctacg ttactggcac acccaaagtc agaagcaaca ataacgctaa ctacagacgc      2280
     ttctgatact gcaataggcg ccgtagtaca tcaggtgatt aatggagaac aacaacctct      2340
     ggcattcatg agcaagaagc tcaatcaagc acaaacgaag tacagtccgt acgataggga      2400
     actactcgca gtatacggag cagtaaagta tttccgacac ctgctggaag gaagaacatt      2460
     caccatctac acagatcata aaccgttaat ctacgctttc caacaagacg tactacggag      2520
     ctcacctaga caagctcggc atctagactt cattagtcaa ttctcaacgg acatacggca      2580
     cgtagcaggc aaagacaatg tagtggcaga tgccttatct cgagttgaag ctattcaaac      2640
     agcgccagac ttcgaaacat tagcaaaatc gcaaaacgaa gacactgaac tgaagaaaat      2700
     tttagacggc accactcaac attcgctgaa gctggaaaaa gtacaaatcc caggctccac      2760
     aacgacgata gtatgcgaca ccacaatgcc gataaaacgt ccatatgtta caaaaccatt      2820
     cagacagcag gtattcagag ccctgcatgg tctgtcacat cctggcgtta aggcaactgc      2880
     aagactaatt aaagatagat acgtatggcc aaacatacaa caagattgcc gcacttgggc      2940
     acgctcttgc attccatgcc agaaggcaaa ggtatttaag catacagtct cacctacggg      3000
     aagcttttct aatcccacta gaagatttga acacatccac atggatatcg tcggaccaat      3060
     gccaacatca atgggatata aatactgctt gacgatcatc gatagattta caagatggcc      3120
     tgaagccata cctataccag atatctcagc agaaacaata gcgagacagc tgatgacaaa      3180
     ctggatagca cgttatggaa ctccagcacg aataacaacc gaccaaggtc ggcaatttga      3240
     atcagatctg ttcaagcaat taaccaaatt aactgggtca aatcacatac gaacaacagc      3300
     gtatcaccca gcagcaaatg gcatgatcga gagatttcat cgccaaatga aagcatcgat      3360
     taaatgtcac caaacggaag agtgggcaga catacttcca gtcgttttaa tgggcataag      3420
     agcttcatgg aaagaagatc tacaagctac cccagcagaa atggtttatg gcgaaccaat      3480
     acgtcttcca gggcagtttc tgggagaagc caacacaaca aaaagcacag aaggtttcgc      3540
     agcgaaactc ggaaaaacaa tgaggagcct acaaccgaag ctaagaaaac atggagaaaa      3600
     ggctaccttc gtacataaag acttgagtac agcacaacaa gttttcttga gacatgacgc      3660
     gttgagagga accttacagc caacttatga cggtccatac cacgtcctta acagaggaga      3720
     gaaaacatac aagctccgca ttaatggacg cgtggtcaac gtctcaattg acaggctgaa      3780
     accggcttac atcctagcac aagaggaagc tacaacagag gagtcaaagt caacaccgat      3840
     gcccctacca agctcaactc caactcacac aagaagtgga cgactatctc gacagccagt      3900
     tcgctttgag ggggtttaga gtcaaccaag ggggtca                               3937
//
ID   Gypsy-23_MoPha-LTR repbase;    DNA;    INV; 973 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-973
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1187-1187 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 973 BP; 211 A; 308 C; 279 G; 175 T; 0 other;
     tgtggcggtc acgccactct agcagcgcgc ctgagctaat gcgctcacgg cgtacaccgg        60
     tgcgtcaacc gacgcgcgct caccgcccac gccgtgaggc gccagcggag cagtgcgcgg       120
     cgcagccgat agagcggccg cggcactcgg gagtaagatg cagcggcccg gctatataaa       180
     gaccacccgc agcgctgaaa tctaatctaa tcttagattc gcagagagga tattttccaa       240
     agatattctc tgtactcttg ttttgtgtag tgacgggcct ccctctcgga gtgtgctcgt       300
     ccgagataac attgggcctc cttcgtggag tgtgctcacc cgggcctcct tcgtggagtg       360
     tgctcacccg ggcctccttc gtggagtgtg ctcacccggg cctccttcgt ggagtgtgct       420
     cctgtcaggg cctccttcgt ggagtgagct caacggcagc atcctgccgc ggagacggaa       480
     gagcaaccgg ccgacccggc cggaggggcg accagcacct tggaccaagg acctgcagac       540
     atcgagactc gaccctgggc aagcgaagtt gccttggagg ctaattcctt tggatcttcc       600
     accgattcag cgagcccgga ttccacgtta tctgcagcac accacaggga cgcagaccac       660
     accgacccga ccgaaggtcg acgctagcgt gcaggctaag gcctctggcg gttccaacga       720
     ctcctggcct agtacgcctt cagggaagcc caggactcca cgggccccca agaagaggac       780
     gcaaagccat agcgccaaga tccaactgaa gccacaggac ctctacgcgg agttcgtagc       840
     atcgatcaac gcgggacaac cgtccttata aggacgcctg ataaaccgcc cttttcaggg       900
     cgaccaaaaa gctccacgcg gtggaacatc tcaagtgggg agtaaagtac attagctacc       960
     gaacttaccc aca                                                          973
//
ID   Gypsy-23_MSe-I repbase;    DNA;    INV; 5136 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5136
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 900-900 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..4366
FT                 /product="Gypsy-23_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGPFIDGIGVKKRRYVESLSSNDNENQDFFSSSDDE
FT                 DSARKQYKRKRRRVTQIDAEVIPTFRPDEKTSNVKGWLHKIDQLGDVYNWD
FT                 NTDRQFIMQIRLRGSAREWYDDLEDYNLTWSEWKNALETAFPRSTDYVDLL
FT                 EVMLARKKSDSETMTKYFHDKISLLKKCNIIGEAAISCVIRGLPVEIRANA
FT                 KAFQCDTPQQLYYGYLSSLENYKQIEAPSSLKRQSTSWKRGSDVASSSREN
FT                 DCLPKKCYACRRQGHEAKDCRVPRCEICHRPGHTSSTCWYATSSSRQQQKV
FT                 GNIFFTTYNIYMNLYKKMVIVMGQNLVAFIDTGSNLNILSAKRANNLMLKI
FT                 APSVVKMKGFGGAYSNSMGTSWIDVYVDNIKISGSVELTNNDLADIDLIIG
FT                 QTMINQRDLSLVITETSVNFVKKVEQDCHLCKIQLGMIDFVTKFPVYVKDY
FT                 TIISQQCTALVKVFIDVPTYNDCIFLTNSVYYELGSIAYIIVSGLIRSRDC
FT                 YLKIMNIGNDIIKWERNRLIARAELVKNLNCSDRKVMTIIQPFHNKLQLSD
FT                 LNVGELDTDECSKLLDLLNKFRYLFAKDTKDLGCTDMLEMRIHTTTEQPVY
FT                 CKPYRLSHKENEIVNEKVQDLIDAGIIRDSMSDYASPVVLVKKKGGDYRLC
FT                 IDYRALNSRTVKDRYPLPHIEDQVTRLSGKSFFTTLDLAQGYYQVKISDDS
FT                 IHKTAFVTPSGQYEFLKMPFGLANAPAVFSRLIKIVLGELGNDVATYLDDV
FT                 MLPTVSVDDGLRLLEKVLQLLSKANLKLNLNKCSFLKQSANYLGHEITAGT
FT                 IRPGQAKISCVANYMKPRNIHEIRQFIGLTSYFRKFIRGFAEIARPLTKLT
FT                 KKDVEWTWGPDQEKSFQTLKERLSERPVLGIYDRNARTEIHTDASKLGLGG
FT                 ILLQYQTDGTLKPIAYFSRVTSREEQFYHSYELETLAVVESLKRFRMYVIG
FT                 IPITVVTDCAALRTTLIKKDLIPRIARWWLSIQDYDLQIEYRSGDRMKHVD
FT                 ALSRNPAPSILMVKESDWLLTLQIQDENIQSILNQLQNGTDNRDITNNYSI
FT                 KDDLLYRKTLNGDRFVIPKLAKWSLLQKLHDQIGHPGFDKTEKTIKAQFWF
FT                 KGMTRFIRKYIKSCLRCAYGKGEHGKLQGELHPIEKVAVPMHTLHVDHLGP
FT                 FVKTRKRNCYILVVIDSFTKYVFSRAVKNCGSVETIKHLKEIINQFGNPNR
FT                 IITDRGKAFTSRYFKQFAEEMQFKHILNAIASPRSNGQVERVNRTLINGLN
FT                 TMSSSECTWDDHLSDIVWGINNTPHAVTGFPPFKLLFGHSNSRLPAYPSGD
FT                 PTDFEGQSRALQGRRGEAKLRIDKNMTLMKDRFDRSHRKCVKYSIGQLVLW
FT                 KGGITRESVNVTRKLNGLYTGPYKVCKADYSLDRYTISSIKGMKGYRNFTA
FT                 IVRGDALRPYNSAISDESSGSDHEVDRDDLIDLLES"
XX
SQ   Sequence 5136 BP; 1777 A; 838 C; 1027 G; 1494 T; 0 other;
     tatcagaagt gggattatgt ccggcccatt tattgatggc atcggcgtaa agaaaaggag        60
     gtatgttgaa tctttgtctt ctaacgataa cgaaaaccaa gatttttttt cttcatctga       120
     tgacgaagat tctgctcgca aacaatacaa acggaaaagg cgacgggtga ctcaaataga       180
     cgctgaagtt atcccgactt tccgaccgga tgaaaaaact agtaacgtga aagggtggtt       240
     gcataaaatc gaccagttgg gggatgtgta taactgggac aatacggatc gtcagtttat       300
     tatgcagata cgccttcggg gttccgcaag ggaatggtac gacgacttgg aggattataa       360
     tcttacatgg agtgagtgga aaaatgcttt agaaactgca tttccgcgtt ctacggacta       420
     tgtagatctt ttagaagtta tgcttgcaag aaagaaatcc gacagtgaaa ctatgacgaa       480
     atactttcac gataaaatat ccttactgaa gaaatgtaat atcataggcg aggcggcgat       540
     ttcatgtgtc atcaggggat taccggttga aataagagcc aacgcaaaag ctttccaatg       600
     cgacacaccg cagcagcttt attacggata tttatcgtca ctcgaaaact ataagcaaat       660
     agaagctcct agcagtctta aacgccaaag tacgtcgtgg aagagaggta gtgatgtcgc       720
     atcgagctca cgggaaaatg actgtttgcc caagaagtgc tacgcttgta gaagacaagg       780
     acacgaagcc aaggactgca gagttccacg gtgtgaaatc tgtcatcgtc caggccacac       840
     gtcttccacc tgttggtatg ctaccagttc atctcgacaa cagcagaagg tcggtaacat       900
     cttttttaca acatacaaca tttatatgaa tttgtataaa aaaatggtca tagttatggg       960
     ccaaaacctt gtagcattca tagatacagg tagtaatttg aacattttaa gcgcgaaacg      1020
     agctaataat ttaatgttaa aaatcgcgcc gtcagtggta aaaatgaaag gttttggtgg      1080
     tgcatattcc aattcaatgg gaacctcttg gatagatgtc tatgtagaca atattaaaat      1140
     aagtggttct gttgagttaa ctaataatga tttagctgat atagatttaa taattggtca      1200
     aactatgatt aatcaaaggg atttaagttt ggttattacc gaaacctcgg tcaattttgt      1260
     taaaaaagta gagcaagatt gtcatctatg taagatacag ttaggtatga tagatttcgt      1320
     tacaaaattc ccggtctatg tgaaagatta cactataatc tcgcaacaat gtacggcatt      1380
     agtaaaagtt tttattgatg tacccactta taatgattgt atatttttaa cgaactctgt      1440
     gtattatgag ctaggaagta ttgcttatat tattgtaagc ggtcttataa ggtccaggga      1500
     ttgctattta aaaataatga acataggaaa cgatatcatt aagtgggaac gaaacaggct      1560
     tatagcacgc gccgaacttg ttaaaaactt aaactgtagt gacaggaaag taatgacaat      1620
     tattcaacct ttccataata agttacaatt atctgattta aacgtaggcg aattagatac      1680
     cgatgaatgc agcaaattac tagacttact taataaattt agatatttgt ttgcaaagga      1740
     tacgaaagat ttaggttgta cagatatgtt ggaaatgcgt attcatacta cgaccgaaca      1800
     gccagtttac tgcaagcctt atcgactttc ccataaagaa aatgaaatag ttaatgagaa      1860
     agttcaagat cttattgatg cgggcattat tagagattct atgtctgatt atgccagccc      1920
     ggtagtcctc gtaaagaaaa aagggggcga ttacagatta tgcatagact acagggcatt      1980
     aaactcgcgt acagttaaag atagataccc cctgcctcat atagaggacc aggttactcg      2040
     cttatcagga aaatcattct ttacaacatt agatctcgca caagggtatt atcaagtcaa      2100
     aatatcagat gattctattc acaagaccgc gtttgttacg ccctcaggtc agtacgaatt      2160
     tttaaagatg ccttttggtc tggccaatgc acctgcagtt ttctcacgtt taatcaaaat      2220
     tgttttgggt gaactaggta atgatgtagc aacatatctt gatgatgtca tgttgcctac      2280
     agtatctgtt gatgatgggc tcaggctatt agaaaaggtc ttgcaattat tgtccaaagc      2340
     aaacttaaaa ttaaatttaa ataagtgttc gttcctaaaa caaagcgcca actatttagg      2400
     tcatgagatt actgctggta caatacgacc aggacaggcc aaaattagtt gtgtagctaa      2460
     ttatatgaaa ccgcgaaaca tacacgaaat tcgacaattt atcggtctaa catcttactt      2520
     tagaaaattc attcgtggtt ttgcagaaat agctagaccc ctcacaaaac ttactaaaaa      2580
     ggacgttgaa tggacttggg gtccagacca agagaaatcc tttcaaaccc taaaagaacg      2640
     gctttcagaa aggccggttt taggaattta tgatagaaat gcacgcacag aaattcatac      2700
     cgatgcaagt aaactagggt taggtggtat tcttttgcaa taccaaaccg atggaacgct      2760
     taaaccaatt gcatatttta gtagagttac gtccagagaa gaacaatttt atcatagcta      2820
     tgagctagag accctagctg ttgtagaatc acttaaaaga tttcgaatgt atgtaatagg      2880
     aatccccata actgttgtga ccgactgtgc agctttacga actactttaa ttaaaaaaga      2940
     cttaattccc cgcatagccc ggtggtggct gtcaatacag gactatgacc tacagattga      3000
     gtaccgatct ggtgatcgaa tgaagcatgt agacgctttg agtagaaacc cggcacctag      3060
     tattttaatg gtaaaagagt ctgattggtt attaactttg caaatacaag acgaaaatat      3120
     tcagtcaatt ttgaatcaat tgcaaaacgg tactgataat agggatatta ctaataatta      3180
     ttcaataaag gatgatcttc tctatagaaa aacgcttaat ggtgatcgtt tcgttatacc      3240
     taaattggcg aaatggagct tactacagaa actccatgat caaataggcc atccaggttt      3300
     tgataaaacc gaaaagacca ttaaagccca attttggttc aagggcatga ctagatttat      3360
     tcgaaaatat ataaaatcat gtcttcgttg cgcttatgga aaaggggaac acggtaaatt      3420
     gcagggagaa ttgcacccca tagagaaggt ggcagtcccg atgcatacat tacatgttga      3480
     tcatttggga ccatttgtta aaactcggaa acgaaattgt tacatacttg ttgttataga      3540
     ctcatttaca aaatatgtat tttcaagagc tgttaaaaac tgtggttctg tagagactat      3600
     aaaacactta aaagaaataa taaaccaatt tggaaatcct aacagaatca tcacagatag      3660
     aggtaaagca tttactagca gatatttcaa acaattcgct gaggaaatgc aatttaaaca      3720
     tattttaaat gctatcgcaa gtcctagatc gaatggacaa gtggagcgtg tcaatcggac      3780
     tttgattaat ggtttaaata ctatgtcaag tagtgaatgt acctgggacg accacctttc      3840
     ggatatagtt tggggcatta ataacactcc tcacgcagta acaggttttc cgcctttcaa      3900
     gttattattt ggtcactcta attcgcggtt accagcctat cctagtggag atcctacaga      3960
     ctttgaaggt cagtctcggg cgttacaagg gagacggggt gaagctaagt tacgcattga      4020
     taaaaatatg actctcatga aggaccgttt cgaccgaagt cataggaaat gcgttaaata      4080
     ttcgataggt caattagtat tgtggaaagg aggaataact agagaaagcg ttaacgttac      4140
     tagaaaacta aacggattat atactgggcc atataaagtg tgcaaagctg attattcatt      4200
     agatcgttac acaataagca gcataaaggg tatgaaggga tacagaaact ttacagcaat      4260
     agtacgcggt gatgcccttc gaccttataa ttcagctatt tccgatgaaa gtagtggaag      4320
     tgatcatgaa gttgacaggg atgacctaat agacctatta gaaagttaaa tcaaaatcta      4380
     atatattata tgttattttg taattaaata ctggcaattg aattaaaaca ttcaatatta      4440
     tttatcccat tttaattcca gttcataaga gctgtgtgat catatataat taaaagctgt      4500
     gtgatcatat ataaataaaa gctgtgtgat catatataaa taaaagctgt gtgatcatat      4560
     ataaataaaa gctgtgtgat catatataaa taaaagctgt gtgatcatat ataaataaaa      4620
     gctgtgtgat catatataaa taaaagctgt gtgatcatat ataaataaaa gctgtgtgat      4680
     catatataaa taaaagctgt gtgatcatat ataaataaaa gctgtgtgat catatataaa      4740
     taaaagctgt gtgatcatat ataaataaaa gctgtgtgat cataactata taaaagctgt      4800
     gtgatcataa ctatataaaa gctgtgtgat cataactata taaacgctgt gtgatcaata      4860
     tatatataaa tgctgtgtga tcatattata tagataaaag ctgtgtgata atattatgca      4920
     tagatgccag tattaatgaa acgaaaaatg cactgcttca tacgcaaata gaattatctg      4980
     ttaacatatt atatttatat caaagtgtga ttacatttta tattgaaaag tatactgctt      5040
     gtattgtaca atttcagatg cagcaactcc acgaaaaacc agcatcaagt aacatggccg      5100
     atcgccgtgg gacacggcaa actcaggatg gccgaa                                5136
//
ID   Gypsy-23_MSe-LTR repbase;    DNA;    INV; 472 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-472
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 949-949 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 472 BP; 155 A; 75 C; 72 G; 170 T; 0 other;
     tgttatcgac ttccggtcct agcttcagca gtacataaca taatatttaa tagattaata        60
     atttttccta tttagctgat tattataata attgtattat gaacatagag taaaatctaa       120
     ataataacta acgccgtccg gttgttacct tccggcggac ttaattataa attacctttt       180
     aaacaattac ttattcttag tgattacttg ttaaaataca agttaaatgc catatgaatt       240
     aatattatat aatttgatac ataattgtaa tatttagagt gtcttgattt tattgtcggt       300
     tactttttga attcatccga acgtataaaa gatcgttgta gcacgtatgc agggcagttg       360
     atttgtaacc tctggtctga acataagtaa agcggaactt agaaatatag tgtgcctaat       420
     ataaaagtgt cgttttgctg ccggcatcca ccctgactat accacatcaa ca               472
//
ID   Gypsy-23_OrIn-I repbase;    DNA;    INV; 4613 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4613
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1564-1564 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..4299
FT                 /product="Gypsy-23_OrIn-I_1p"
FT                 /note="SAP at the N-terminus, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MMETEFQRLKAKELRDEARARGLPTKGTRRELIQSLT
FT                 DFEIDKNKDEEDESDQEDEISDQEDEITKNPARNERSVRTKEVKTIVSRSQ
FT                 VDFRDIEGAVPFFSGEKTENVIRWVEEFENIAEICDLSERQKVLFARRLIK
FT                 GSAKSFIQFEKCGYEWNNFKKTLIDEFKPLIDSKAIHEQLRNRKPTPKETL
FT                 LEYFYAMLQLSTNGDVELSVVLKYIVENIPDKPENKTILMGATTCSEFRQK
FT                 LQLYEEMRKMSQRSREDVTQIKANLKKKTSQQQDNAMKCFNCGLPGHKIAD
FT                 CRKPRREKGSCFECGSADHKILHCPKRKGMKGEHEHVNLIELIPTYNVKLE
FT                 SECLKWAALAVIDSGSPVSLISFGILNEFVEYKAYLGPGLAGINGSRLNIL
FT                 GKTRQIIKIDGHVSLDVDFLIVPDGTIKYDCLLGRNFISDSRIRVTLSSDV
FT                 LIEKRENEFSNELLSITVDCDNFEVALKINENLDFDDLLEVKNIMSSHYFG
FT                 AFGPKQPITDMKMNIVVKPDHVPFFYRPRRLSVEEKLAVNSIIKDLLQREI
FT                 IRPSTSPYASPIVLLRKKSNQFRMAVDYRSLNKLMVKDHFPIPIIQDYLDT
FT                 LKDKKYYTRLDLKDAFYHIKLNEESCKFTSFITFMGQFEYVRLPFGLSNGP
FT                 SMFMRFIYHAFQSLLEQGKVLIYFDDILIATKSIKEHLVILKEVLQTVVNN
FT                 CLELNIEKCDFLQTEIEFLGYKINVNGIQPSPNNVLTVMNYPVPRNFKQLS
FT                 SFLGLISYFRKFIPNFATLAKPLYELQKVGKDFIFSDAELACFDHLKSLLM
FT                 SKPILSVYSPHAETELHCDASADGYGAILMQRQADAKFHPIFYFSKRTTDE
FT                 ESRYHSFELEAAAVVYALQRFRVYLQGIKFKIITDCNSLKCTLEKKDVNAR
FT                 ILRWSLFLRDFDFIMEHRPGARMRHVDALSRLHYVLNIDENSFERNLCLLQ
FT                 DKDPDIVEIKEMLSSTESNRFEMRNGLIYRKISGKSLFYVPKSMETQVIKS
FT                 CHDDLGHCGVSRTQEYLGRVYWFPNSKNKIVEYIKNCLKCIVYSSLANKVE
FT                 GELHSIPKGTEPFQLIHIDHYGPLEKTSRGFRYVLSVIDGFTRFVKFYPTK
FT                 TTNAEEVIKGLNNYFTNYSTPRKLVSDRGSAFTSNCFKEFMDEKGVNHIKV
FT                 ATATPQANGQVERVHRVLTPMLAKLSPGKNQWDKVLDQVAFAMNNSVNRSI
FT                 KETPAKLLFGVNQRGAVITDIVRCVLETNDSQFSPEQVTLIRARANDANEI
FT                 AARNNKIYYDKRHKPPQKYNVGDYVMIKNIDVTPGRNKKLIPKYKGPYVVQ
FT                 EVYENDRYKIKDIEGFQITQIPYEGICSPSNMRLMLKFKHAPLCLKKKKKK
FT                 KKKIKLLIAQLLDIPNFIMYFLVFYVCIIMYFLDLCMLSWRNSLCIFLIKT
FT                 FCIFLIMTYVFSD"
FT   CDS           1536..4298
FT                 /product="Gypsy-23_OrIn-I_2p"
FT                 /translation="HEMNIVVKPDHVPFFYRPRRLSVEEKLAVNSIIKDLL
FT                 QREIIRPSTSPYASPIVLLRKKSNQFRMAVDYRSLNKLMVKDHFPIPIIQD
FT                 YLDTLKDKKYYTRLDLKDAFYHIKLNEESCKFTSFITFMGQFEYVRLPFGL
FT                 SNGPSMFMRFIYHAFQSLLEQGKVLIYFDDILIATKSIKEHLVILKEVLQT
FT                 VVNNCLELNIEKCDFLQTEIEFLGYKINVNGIQPSPNNVLTVMNYPVPRNF
FT                 KQLSSFLGLISYFRKFIPNFATLAKPLYELQKVGKDFIFSDAELACFDHLK
FT                 SLLMSKPILSVYSPHAETELHCDASADGYGAILMQRQADAKFHPIFYFSKR
FT                 TTDEESRYHSFELEAAAVVYALQRFRVYLQGIKFKIITDCNSLKCTLEKKD
FT                 VNARILRWSLFLRDFDFIMEHRPGARMRHVDALSRLHYVLNIDENSFERNL
FT                 CLLQDKDPDIVEIKEMLSSTESNRFEMRNGLIYRKISGKSLFYVPKSMETQ
FT                 VIKSCHDDLGHCGVSRTQEYLGRVYWFPNSKNKIVEYIKNCLKCIVYSSLA
FT                 NKVEGELHSIPKGTEPFQLIHIDHYGPLEKTSRGFRYVLSVIDGFTRFVKF
FT                 YPTKTTNAEEVIKGLNNYFTNYSTPRKLVSDRGSAFTSNCFKEFMDEKGVN
FT                 HIKVATATPQANGQVERVHRVLTPMLAKLSPGKNQWDKVLDQVAFAMNNSV
FT                 NRSIKETPAKLLFGVNQRGAVITDIVRCVLETNDSQFSPEQVTLIRARAND
FT                 ANEIAARNNKIYYDKRHKPPQKYNVGDYVMIKNIDVTPGRNKKLIPKYKGP
FT                 YVVQEVYENDRYKIKDIEGFQITQIPYEGICSPSNMRLMLKFKHAPLCLKK
FT                 KKKKKKKIKLLIAQLLDIPNFIMYFLVFYVCIIMYFLDLCMLSWRNSLCIF
FT                 LIKTFCIFLIMTYVFSD"
XX
SQ   Sequence 4613 BP; 1494 A; 719 C; 937 G; 1461 T; 2 other;
     attcagaagt gggatcgaat gatggaaacg gaatttcaac gattgaaagc gaaggaactt        60
     cgagacgaag cccgagcacg aggtttgcca acgaaaggaa cgcgccggga actaattcaa       120
     tcgctcacag attttgagat cgacaaaaac aaggatgaag aagacgaaag cgatcaagaa       180
     gacgaaatta gcgatcaaga agacgaaatt acgaaaaatc cggcacggaa tgaaagatcg       240
     gtgagaacca aggaggttaa gacgatcgta tctcggtctc aggtcgactt ccgagacatc       300
     gaaggagcgg ttccgttctt ctcaggagag aaaacagaaa atgttataag gtgggtggaa       360
     gagtttgaaa atattgccga aatttgcgat ctttcagaac ggcagaaagt acttttcgct       420
     cgccgtctga tcaaaggatc agctaaatcg ttcatacaat ttgagaaatg tggttatgag       480
     tggaacaatt ttaagaaaac attaattgat gaatttaagc cgcttatcga cagcaaagcg       540
     atacacgaac aattgcgtaa ccgcaaaccg actccgaaag aracactgtt ggaatatttt       600
     tatgcgatgc tacaattatc cacaaatgga gacgttgaat tatcggtcgt attgaaatac       660
     atagttgaaa acatcccgga caagccggag aacaagacta tcttaatggg agcgacgact       720
     tgctcagaat ttagacaaaa gttacaactt tatgaagaga tgcggaaaat gtctcaacgt       780
     tcacgagaag atgtcaccca gattaaggcg aacctgaaga agaagacttc ccaacaacag       840
     gacaatgcga tgaaatgctt caactgtgga ctgccggggc acaagattgc tgactgtcgg       900
     aagccacgga gagaaaaggg aagctgcttt gaatgtggct ccgctgatca taaaattcta       960
     cattgcccta agagaaaggg aatgaagggt gagcatgagc atgttaatct aattgagtta      1020
     atcccaactt ataatgtcaa attagagtct gaatgtctga aatgggctgc attagcagtt      1080
     atcgattctg gaagtccagt atctttaatt agttttggaa ttttaaatga atttgtcgaa      1140
     tataaagcct atttgggtcc tgggctggcg ggcatcaatg gatctagatt gaatatcctt      1200
     ggaaagacca gacaaataat taaaattgat ggtcatgtta gtcttgatgt tgattttctt      1260
     attgtgcctg atggtaccat taaatatgat tgtcttctgg ggcgaaattt tatttctgat      1320
     agccgtatta gagtcacttt gagttctgat gttttaattg aaaaaaggga aaatgaattt      1380
     tccaatgaac tattgtcgat tacagtcgat tgcgacaatt ttgaagtagc tcttaaaatt      1440
     aatgaaaatt tagattttga tgacttatta gaagttaaga atataatgtc atcgcattat      1500
     tttggagctt ttggtccaaa gcaacctatt actgacatga aaatgaatat tgtcgttaag      1560
     cctgatcatg ttccattttt ctaccggcct cgaagattat cggttgagga aaaattggct      1620
     gtaaattcta ttattaaaga tctattacaa agggaaatta ttaggcctag cacttcacct      1680
     tatgcgagtc ccatcgtact tcttaggaag aagtcaaatc agtttcgaat ggcagttgat      1740
     tatcgcagtc ttaacaaatt gatggttaaa gatcatttcc caatacccat aattcaggat      1800
     tatttggata cattgaaaga taaaaagtat tacaccagat tagatttaaa ggatgcattt      1860
     taccacatca aactgaatga ggaatcatgt aaatttacct ctttcataac ttttatgggt      1920
     cagttcgaat atgttcgatt accgttcgga ttatcaaatg gtccttcaat gttcatgagg      1980
     ttcatttatc atgcttttca gtctttgttg gaacagggta aggttttaat ctactttgat      2040
     gatattttga ttgcgaccaa gtctataaaa gaacatttag ttattttaaa agaagttctc      2100
     caaactgttg tcaacaattg tcttgagttg aatattgaaa agtgcgattt tcttcagact      2160
     gagatagagt ttttgggata caaaataaat gtaaatggta ttcagccgtc tcccaataat      2220
     gttttaactg ttatgaacta tccagttcct agaaatttta aacagttatc tagcttttta      2280
     ggacttattt cttatttccg aaaatttatc ccaaattttg ctactttagc taagccactg      2340
     tatgagttac agaaagttgg caaggatttc atatttagtg atgcggaact agcttgtttt      2400
     gatcatctaa agtctctttt aatgtccaaa cctattttga gcgtttattc gccgcatgca      2460
     gagactgagc tgcattgcga tgccagcgct gatggttatg gtgcaatttt aatgcaacga      2520
     caagcggatg caaaatttca tcccatattt tactttagta aaagaaccac tgatgaggag      2580
     tctagatatc acagtttcga attagaagct gctgctgtgg tttatgcact tcagcgtttt      2640
     cgagtttatc ttcaagggat taaattcaaa ataataactg attgtaacag tttaaagtgt      2700
     accttggaaa agaaagatgt taatgctaga attttaagat ggtcactttt tcttagagat      2760
     tttgatttca ttatggagca cagacctggt gccagaatga ggcatgtgga tgctctaagc      2820
     cgtctacatt atgttttgaa tatcgatgag aatagttttg aaagaaattt atgtttgctt      2880
     caggataaag accctgatat tgttgaaatt aaggaaatgt taagttcaac tgagagtaat      2940
     cgttttgaaa tgagaaacgg attgatttat cggaaaattt cgggaaaatc tctattttac      3000
     gtccctaaat cgatggaaac ccaagttatt aaatcatgtc atgatgattt gggacactgt      3060
     ggtgtttcga ggacacaaga gtatcttgga agagtttatt ggttcccgaa ttcaaaaaat      3120
     aagattgttg agtacataaa aaattgtctt aaatgcattg tttattcttc actcgcaaac      3180
     aaagtggaag gtgarttgca tagtatacct aagggtactg agccctttca gttaatccat      3240
     atcgaccatt atgggccact ggaaaaaaca agtcgagggt ttaggtatgt ccttagtgtt      3300
     attgatggat ttactcgttt tgtcaaattt tatccgacaa aaaccactaa tgcggaagag      3360
     gttataaaag gtttaaataa ttattttacg aattacagta cacctaggaa gcttgtttcc      3420
     gatagaggct ctgccttcac atcaaattgc tttaaagaat ttatggatga gaaaggtgtt      3480
     aatcatatca aagtggcaac agcaactccc caggcaaatg ggcaggtaga gcgggtgcat      3540
     agagttttaa ctcccatgct agcgaaactt tcccctggaa aaaatcaatg ggataaggtc      3600
     ttagatcagg tagcatttgc aatgaacaat tctgttaata ggtcgattaa ggaaactcct      3660
     gcgaaattgt tattcggggt gaatcagcga ggtgctgtta tcactgatat agttaggtgt      3720
     gtattagaga ccaatgatag tcaattttca ccagaacaag tgactttaat aagagctagg      3780
     gctaatgatg caaatgaaat cgctgccaga aacaataaaa tttactatga caaacggcat      3840
     aaacctcccc aaaaatataa cgttggtgac tacgtaatga ttaaaaatat tgatgtcact      3900
     ccgggacgaa acaagaaatt gattccaaag tataaaggcc cttatgttgt ccaggaagtt      3960
     tatgaaaatg atagatataa aattaaggat atagagggct tccagatcac ccagattcct      4020
     tatgagggga tttgctcacc ctcgaacatg cgccttatgc ttaaattcaa acatgcgccc      4080
     ttatgcttaa aaaaaaaaaa aaaaaaaaaa aaaaaaatta agttgctcat tgctcagtta      4140
     ctcgatattc ctaattttat tatgtatttt cttgtatttt atgtatgtat aatcatgtat      4200
     tttcttgact tatgtatgtt atcttggcgt aatagcttat gtattttcct aattaagact      4260
     ttctgtatct tcttgataat gacttatgta ttttctgatt aagacttttc tgtatcttct      4320
     tgattatgac ttatgtattt tctgattaag acttttctgt atctacctga taatgaatta      4380
     tgaaaattta tgattatgac ttagaattta tgtgctatga atggtgttct cttttatggt      4440
     ttttgccact tatgttttgc ccattaggtt actgttgata gtgtatgtat tacttatcaa      4500
     caaatataag gccactttat gctcttgaca attatgtatt atgtattatg tattatgtat      4560
     aattatgtat tatgagtaat gatagggtca tcattattgt caggatggtc gaa             4613
//
ID   Gypsy-23_OrIn-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-158
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1530-1530 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 158 BP; 51 A; 23 C; 30 G; 54 T; 0 other;
     tgtagtggta gtactggagg aaaggtaata ggaaggctat cctttaagag agacccgttg        60
     tttacgttta agttataaag tgtcttatgg ttatgttaaa taaatccgtc attatctact       120
     acatcttcta ttagttattt aacaacgaca ccacaata                               158
//
ID   Gypsy-23_PBa-I repbase;    DNA;    INV; 8283 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-8283
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 717-717 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           295..5277
FT                 /product="Gypsy-23_PBa-I_1p"
FT                 /translation="MSNEDINRTSVERNASWLHSDTGRRAFIVSPSPPSPA
FT                 QAENTRDPRDNVRRNLNDYYSDDSLESQTELHPNIVIERVFSLSDIDNSLL
FT                 PSNERRDDDLLRPTDARSDVSNDTNASNRGEFSLTSYDSSVFDPTEFHTAS
FT                 RDASQIEMANQPSGTPLRPIAEERRVTDIELVDEAKQMRATLNQPHWKTDP
FT                 ETSRDSRDMMLTEILEGMRALQNRMSQLEMTNYNRDTDAGINEPRETVYGR
FT                 TMNDVRNSRDPVNAYMRLKEARDMIPEFDGASHKLPEFLSAATYAMKNTNP
FT                 REESTLLEAILCTKLKGRAMTDFQTRDIRDFAQLKRELEVCYLSKKSTTHL
FT                 QLEFNTLKQKPGESARAFGLRTDKLAMELYESMIEGRQDKTESKRAILETI
FT                 QQQALYNFQLGLQDDIKLLVRAQHYTTLQDAIAGASAEEKFKGPTGNFARP
FT                 KANIPHPPARENRLPQCHKCGKTGHYGRDCRTNKYTSRFPLPQPDRQPRIN
FT                 TMSKYCTHCKKAGHNRAECWILHGKTEKGTRQFKNSNANNNANKTRINTMI
FT                 KTKRDKPRRESADSASSSSSGEESDRPKARVTRTAGKYQVAQVTRGEARNG
FT                 LELVTLPIKEVKKGKATFLLDTGATLTLMKIGNFKSETPVREKRIALTGVT
FT                 GHKIHTLGKVKLTIKLGKEEIRHSVYVVRDDFPMDYEGILGIDFLAKQKAR
FT                 CDHGKKILSIGKTNLKLQPYQKVLLKPRSETIIEAFTNRNQVGIIRQEQPR
FT                 PGVFIGCCLVDPKEFTCPISIINTTEEPVEISTPMVNLEEIETQSAEMLNT
FT                 VKKDTETIGERRKRVREQLRTDHLNIEEKETLEQICNDYGDIFHLEGDSLS
FT                 HTTAVQHEITTRTDSAPVNVRPYRLPEKHKAEVNKQITKMLEEKIIRPSTS
FT                 QWNAPILVVPKKADASGIPKLRIVVDFRKLNNLTIGDSFPLPNITDILDQL
FT                 GNAKYFSTLDLASGYHQIAMHDKDKNKTAFSTPYGHYEFNRMPFGLKNAPA
FT                 TFQRLMNSVLAGIQGIRCLVYLDDIVVYGPNLKEHNKRLIEVFQKLRNYNL
FT                 KLQPSKCEFLRKEVTYLGHIISENGIIPDPSKITAVTNFPVPKKVRDVQSF
FT                 IGLAGYYRRFIENFSKIAKPLTKLTRKDEKFNWTAEQQNAFETLKERLTTA
FT                 PVLSYPDFTKQFILTTDASGYAIGAVLSQGPVGQDRPIAYASRILNKAEQN
FT                 YNTTEKELLAIVWAVKHFRPYLYGTKFQIVTDHKPLIWLFGITDPGSRLIR
FT                 WRLKLEEYDYEVVHKAGKGNTNADALSRNPIARDTQINSVERDKEEREYSK
FT                 EEKEQIIYEYHNAPLGGHQGATRTINRIKLIHNWHGLTRDVEDYIAKCEYC
FT                 QKNKLSRKTKMPLVLTETAEKPFEKCALDIVGPLTVTTQGNKYLLTFQDDL
FT                 TKFSKAIPIPDQEANTIAKEFTTKIICEFGIPEKILTDQGTNFVSEMFKDV
FT                 CTLLKITKIQTTAYHPESNGALERSHRTLAEYLRHYIDEDQTNWDEWIPYA
FT                 MFTYNTTPHTATGYTPFELLYGHRASLPTALTAPPKPYYTYDNYAQELKER
FT                 LRATQKLAKEHIREAKQKAKNYADKNANSKTFKVGDKVLLHDEAVRRGRSK
FT                 KLEAPWIGPYQVIEKISDVNYRIKLKRKVVTVHANRLKLFIEN"
FT   CDS           6379..8106
FT                 /product="Gypsy-23_PBa-I_2p"
FT                 /translation="MALMQRRGDAAPPYVLKKFQNTPGIYFEETGSMNQVQ
FT                 TTWKLIIKLDINALEKRAQQMENYLDQTSERCKSIIGPVQFTCKNIMQIIQ
FT                 KDNAKLTQLLTRLRTIYYTRDSKRGLINAIGAISKTLFGTMDAEDEEHLNE
FT                 QIQMLQEGQQTLQHATKTQIKIINATIGHMDALEKTVSHNENILRNVTARM
FT                 ELQLAKYTQREDMDENLLILRTIMTDLTKDVENTIDYLSLTKNGIVHARLL
FT                 PLETIITELREAATQLTEGLHFPFTIRVENWRTIQKYITISAYYNKPDIYT
FT                 IIRFPVIAFPTFKLIRTVSLPVRNHDTFTFIKIHHPVVAIDKENHHYILPD
FT                 ENELQTCIQDGQLYTCERDFPVYHINTNAPCEVQVYVNAPGQLNNCEQRCV
FT                 ASNTPLWITLTEPQAWLYSMIANQKISIQCDKSPEQQLELSGTGKIKINGK
FT                 CKLTTPEVTLVTKRQLSTRYIQTQLPDFNLTLTPRDSGINQPIKNIKLQPI
FT                 IKNPLELARLSILEDEVNKQVDENMYTFRNSHFVYPISFSGLIVIVIATVI
FT                 IIVIVRKKRNCNKEPPVVTPKVCDEAMMY"
XX
SQ   Sequence 8283 BP; 3003 A; 1857 C; 1857 G; 1566 T; 0 other;
     gattggtggc agcggtggga tcctgagtgc cggaacacga ggaagcagcc atcaccaccc        60
     tctcgagacg tcctggaatc tggaaggaaa agaggacaca aaattgagag ccagtcgcgc       120
     catccagcag ggacacccgg tagagcagcc agcgagcata tcagcgacac cggagaaggc       180
     gccgacctac cgcaacaggc gagcaaacgc tacagcatgc aaattgcgac cgtaatgtaa       240
     gtcatagaaa attaaaagcg agcgcaatag atattaagca aagcggtaaa atagatgtcg       300
     aacgaagaca tcaatcgaac atccgtcgag agaaacgcgt cgtggttaca tagcgataca       360
     ggccgccgtg cgtttattgt tagtccgagc cctccgagcc ccgcacaggc ggaaaatacg       420
     agagatccac gcgataacgt gcgtcgtaac ttaaacgact attattccga cgatagctta       480
     gagagccaaa cggagttaca tccgaatatt gtaattgaac gcgtgttctc gctcagcgac       540
     attgataaca gtttactgcc gagtaacgag agacgcgacg acgatttact acgcccgaca       600
     gacgcaagat ccgacgtaag taacgatacg aacgcaagca accgcggaga attttcgctg       660
     acatcctacg acagcagcgt attcgatccg accgaattcc ataccgcttc gcgagacgca       720
     agccagatag aaatggcaaa tcagccgtca ggcacgccgt tacgaccgat cgcagaagag       780
     cgacgtgtaa ccgatataga gttagtggac gaagcaaagc aaatgagagc cactttaaat       840
     cagccacact ggaaaaccga tccagaaacc tcgcgcgact cgcgagacat gatgctaaca       900
     gaaatactgg aaggaatgcg agcgttacag aaccgtatga gccagctaga aatgacaaat       960
     tacaatcggg atacagacgc gggaattaat gaaccgagag aaactgtata cgggcgtacg      1020
     atgaacgacg tccggaactc gcgagatccc gtgaacgcgt acatgcgatt aaaagaagct      1080
     cgcgacatga ttccggaatt cgacggagct tcgcacaaac tgccagaatt tttaagcgcg      1140
     gcaacgtatg ccatgaaaaa cacaaatccg agagaggaaa gcacgctatt agaagcaata      1200
     ttatgcacaa aattgaaagg aagagccatg accgatttcc aaacgcgaga tatacgtgac      1260
     tttgcacaat taaagcgaga gctggaagtg tgctatctca gcaaaaagag caccacacat      1320
     ttgcagctag aattcaatac attgaaacaa aagccgggag aatcggcaag agcgttcgga      1380
     ttacgcacag ataaattagc catggaatta tatgaatcca tgatcgaagg gcgacaagac      1440
     aaaacagaat cgaagagagc gatcttagaa actatacaac aacaagcttt atataacttt      1500
     cagctaggat tgcaagacga tataaaattg ttagtgcgtg cgcaacacta cacgacattg      1560
     caagacgcca tagccggcgc gagcgcggag gaaaaattta agggaccaac ggggaatttc      1620
     gcacgtccga aagcgaatat accccaccca cccgcccgcg agaatagact gccgcaatgt      1680
     cacaaatgcg gaaaaacggg gcactatggc cgagattgcc gaacgaataa atacacgagt      1740
     cgattccctc taccacaacc agacagacag ccgcgtataa acacaatgag taaatactgc      1800
     acgcactgca agaaagcagg acataatcgt gcagaatgct ggatacttca cggtaaaacc      1860
     gaaaaaggca ctcgccaatt caaaaatagt aatgcaaata ataatgcgaa taaaacgcga      1920
     ataaatacta tgataaagac gaagcgagat aaaccgcgaa gagagagcgc tgactcagcg      1980
     tcaagcagca gtagcggtga agaaagcgac agaccgaagg ccagggttac gcgcacggcc      2040
     gggaagtatc aagttgcaca agtaacgcga ggagaagcgc gcaacgggct agaattggta      2100
     acactaccaa taaaagaagt aaaaaagggt aaggcaactt ttctgctaga caccggtgct      2160
     accctcacct taatgaaaat cggaaatttc aaaagcgaaa ctccggtgcg tgagaaacgc      2220
     attgcgttaa ccggcgtgac gggacataag atccacacgc taggaaaggt gaaattaaca      2280
     ataaaattag gaaaagaaga aattcgccac tcagtatacg tggtgagaga tgatttccct      2340
     atggattacg aaggaatact cggaattgat ttcctagcca aacaaaaggc aagatgcgat      2400
     cacggaaaaa agatactaag tatcggcaaa acaaatctaa aattgcaacc ataccaaaag      2460
     gtactgctga aaccacgtag cgaaacaata atcgaagcat ttaccaatag aaatcaagta      2520
     gggataataa ggcaagagca accgaggcca ggagtattta tcggatgctg tctggtggac      2580
     cccaaggaat tcacctgtcc gataagtata ataaatacga cagaagaacc cgttgaaata      2640
     agcacaccaa tggtaaactt agaagagata gagacacaga gcgctgaaat gctcaatacg      2700
     gtgaaaaaag acaccgagac tataggcgaa agaagaaaac gagtgcgaga acaattacgc      2760
     acagatcacc tcaacattga agagaaagaa acgttggagc aaatatgtaa tgattatggt      2820
     gatatatttc atttggaagg tgactcactc tcgcacacga ccgcggtgca acatgagatc      2880
     accacgcgca cggatagcgc accggtcaat gtccgaccgt accgcctgcc cgagaagcat      2940
     aaggcggagg tgaataagca gataacgaaa atgctcgagg aaaaaattat ccgaccaagc      3000
     acaagtcagt ggaacgcacc aatattggtc gtcccgaaga aggccgatgc gtccggaata      3060
     cctaaactac gcattgtcgt agattttcgg aaactaaata atttaacgat aggagactcg      3120
     tttccgttac cgaatatcac ggacatcctc gaccagctcg ggaatgcgaa atacttctcg      3180
     acgctagacc tcgcgtcggg ttaccatcaa atagcaatgc acgacaaaga taaaaacaaa      3240
     acggctttct ccacgccgta cgggcattac gaatttaatc gaatgccttt cgggttaaaa      3300
     aatgcgcccg ccacgtttca gcgattaatg aattcggtgt tagcgggaat acagggcata      3360
     agatgccttg tatatttaga cgacatcgtc gtttacggac caaacttaaa ggagcataat      3420
     aagcgactaa tcgaagtgtt ccaaaaattg agaaactata atctcaaact acagccgagc      3480
     aaatgcgaat ttctaagaaa agaggtgaca tatttaggtc acattatttc ggaaaacggt      3540
     ataatcccgg atccatcaaa aataacggct gtaacaaact ttccagtacc caagaaagta      3600
     agggacgtgc agtccttcat aggattagct gggtattaca ggagattcat cgaaaatttt      3660
     tcgaagatcg caaaaccact gacgaaatta actagaaaag acgaaaaatt caattggacg      3720
     gcagaacaac aaaacgcatt tgaaacatta aaagagaggc tgacgaccgc gccagttctg      3780
     agttaccccg actttacaaa acaatttata ttaacaacag acgcatccgg ttatgccatc      3840
     ggagcggtat tatcgcaagg gccagtgggc caagaccgac caattgctta cgcgagcaga      3900
     attctaaata aagcggaaca gaattacaat acgacggaaa aagaattgct agccatagta      3960
     tgggcagtca aacattttcg accgtatcta tacggaacaa aattccaaat agttacggat      4020
     cacaagccat tgatctggtt atttggcata acagatccgg gctcgcgatt aattagatgg      4080
     agactcaaat tggaggaata cgactacgaa gtagtgcata aggccggcaa aggcaataca      4140
     aacgctgacg cgcttagcag aaatccgatc gcgcgcgaca cacagataaa tagcgtcgag      4200
     cgtgacaagg aagagcgcga atacagcaag gaggaaaaag agcagataat atacgaatat      4260
     cataatgccc ccctcggggg acatcaaggt gctacacgca caataaacag aataaaatta      4320
     atacacaact ggcacggatt aacaagagac gtggaagatt acatcgcaaa atgcgagtat      4380
     tgccagaaga acaagttaag cagaaaaact aagatgcctc tagtactaac agaaacggca      4440
     gagaaaccgt tcgaaaaatg cgccctggac atcgtgggac cactcacggt caccacgcaa      4500
     ggaaataagt acctgttaac atttcaggat gatttaacaa aattcagtaa agcaataccg      4560
     ataccggacc aggaagcaaa tacaatcgcc aaagaattta ccacaaagat aatctgcgaa      4620
     ttcggaatac cagagaaaat attaacggat caaggtacga atttcgtcag cgagatgttc      4680
     aaggatgtat gcaccctctt gaaaataacg aaaattcaaa ctaccgcata ccatccagaa      4740
     agtaacggag ctctagagag atcacataga actctagccg aatatttgag acattacata      4800
     gatgaagacc aaactaattg ggatgaatgg attccatacg cgatgtttac ttacaacacg      4860
     acaccgcata ctgcgacggg ttatacgccg ttcgaactac tgtacgggca ccgagcaagc      4920
     ctacctacgg cactgacggc accgccgaaa ccgtactaca cgtacgataa ctacgcgcaa      4980
     gaattgaagg aacgactccg agccacacag aaactggcga aggaacacat ccgcgaggcg      5040
     aaacaaaaag cgaaaaacta tgccgacaaa aatgctaaca gcaaaacttt caaagtgggt      5100
     gataaagtcc tcctgcatga cgaagcagtg cgtcgaggac ggtcaaagaa attagaagca      5160
     ccatggatag gtccgtacca agtaatcgaa aaaatttcgg acgtgaatta tagaatcaaa      5220
     ctaaaacgaa aagtcgtgac tgtacacgcg aaccgactca aactatttat cgaaaattag      5280
     aaaacggacg cgcacgacga aacactcgcg aggaaaagca ttagtagaag cattagtaaa      5340
     agcaaaaata tatatatata tattaatagt aataaggtta gtaaataaaa attgaaaaca      5400
     tatcaattgc ggcgacgcag gacaacccag tagcggcaca aacccggatc cgcagggggt      5460
     cacgagggta cctcgcctcg acccacgtcc gcgtctcctc ggccacgtgc tgggccacca      5520
     gccatgaggc gcgcacgcac tcatgacaca ctacgggagt gtactcccgc tcgcacatcg      5580
     cgcaccgcat tgttgattcc attaccaaaa ttcagttgcg cgttttcgca atcacgtttg      5640
     acgactaaga ctgtgcgcag ccacggacaa cgtcagactg aattaaacaa tttactatat      5700
     gcactccgca gaaaaaaatg cacgggtagg attcaccgaa aagcaatccg aatcccggtg      5760
     ctcctcgcag gacgccccgc gcgcggagga gtacagataa cacgattccc ggcgtacgga      5820
     tgacaaagaa ccgtttcgtt tcgaggaact cagaccgaga ttataataaa ccatgccgta      5880
     ctacatgcaa aggaaaaggg aagagagaga aaagaaagaa aaatgcacaa gcgacacaaa      5940
     aaagggagag ataatgaaat acgcttacct taatgttacg gtggcaacac ttccacatgt      6000
     cgtaccccgg aagtgtcaca aacgatgacc aaaatccgat ccagcgggaa tcgccggcta      6060
     acccatggct cccgtctggg ggtacgtgca ccgtgccccg tgaaatacac atttcgtcgc      6120
     acaccattca tgtcgcacgc gcggagtcgt aacgcgacac gaagccaata ggcgcggtca      6180
     cacgacgcgc acaggatagg catatagcaa cgggtacagc cgttacaacg cgtacggaac      6240
     atgacggtaa caatctgaat aaccgtccgg tgcgaaagct actggtgaac tggcgtgcac      6300
     caaacagcat aagaaaaaat taaatagaat aaggaagtgt aatatgattc ccgaactttt      6360
     caggataatg gccatacaat ggcacttatg cagcgccgag gcgacgccgc accgccatac      6420
     gtgctgaaaa aatttcaaaa cacgccaggc atctatttcg aagaaacagg atcgatgaac      6480
     caggtgcaaa cgacctggaa attaataatc aaactggaca tcaacgcgct agaaaaaaga      6540
     gcgcaacaga tggaaaatta cctggatcaa accagcgagc gatgcaagag catcatcgga      6600
     cccgtccagt ttacgtgtaa aaacataatg caaataatac aaaaagacaa tgcaaaatta      6660
     acacagttgt taacgcgact gagaactatc tactacacta gagacagcaa acgaggactg      6720
     ataaacgcga ttggcgcgat aagcaaaacg ttattcggca ccatggatgc cgaggacgag      6780
     gagcatctca atgagcaaat acaaatgctg caagaaggcc aacagacctt acaacacgcg      6840
     acgaaaactc agatcaaaat tatcaacgcc acaatagggc acatggatgc attggaaaaa      6900
     acggttagtc acaacgaaaa tatactgcgg aatgtcacgg cacggatgga attgcagctt      6960
     gcgaaatata cgcaacgcga ggacatggac gaaaacttat taatactgcg gacaataatg      7020
     acagacctta caaaggacgt agaaaacaca atcgattatt tatcactgac taaaaacggg      7080
     atagtacacg cgcggctatt accgttggaa acgatcataa cagagctgcg agaagcagcg      7140
     actcaattga ccgaaggtct acattttcca tttacaatac gggtggaaaa ctggcgtacg      7200
     atccaaaaat atataacaat aagcgcatat tataataaac cggacattta cacgattatt      7260
     cgtttcccgg taatcgcgtt tccaacattt aaactaataa gaactgtatc attaccggta      7320
     cgcaaccacg atacttttac attcataaaa attcaccacc cggtagtagc gatagataaa      7380
     gaaaatcatc actacatatt gccagacgaa aacgaactac aaacatgtat acaagacgga      7440
     caactgtaca catgcgaacg agatttccct gtctatcata ttaacacgaa cgcaccatgc      7500
     gaggtgcaag tctatgtaaa cgcgccgggt caactcaaca actgcgaaca gcgatgcgta      7560
     gcgtccaata cacccttgtg gataacatta acggaaccac aagcgtggct atattcgatg      7620
     atagcaaacc aaaaaataag tatccagtgc gataagtcac cggaacaaca attagagcta      7680
     agcggcacgg gaaaaataaa aattaacggg aaatgtaaac taacaacgcc cgaggtaaca      7740
     ttagtaacga agcgacaact gtcgacgaga tacatacaga cacaattacc agactttaat      7800
     ttaacgctca cgccgcgcga cagcggaatt aatcaaccga taaaaaatat taagttacaa      7860
     ccgataataa agaatccact cgaactcgct agactaagca tattagaaga cgaagtaaac      7920
     aaacaggtag acgaaaatat gtatacattc agaaatagcc attttgtata tccgattagc      7980
     tttagcggat taatagtaat tgtaatcgct accgttataa taattgtaat tgtaaggaaa      8040
     aagagaaact gtaataaaga accccccgtc gtaacaccaa aggtttgcga cgaagcaatg      8100
     atgtactaag agcaaatgta aaacaaatgt aaaatagatg taaaaaacaa aatagcaacc      8160
     catgtaaaac ttaattataa gattaatata acataagcat tgcgaaatat tattgtacga      8220
     ctagtataag cgctaaatta aaagaaaact ccccctcgtt ttctttttcc aaggggggag      8280
     gga                                                                    8283
//
ID   Gypsy-23_PBa-LTR repbase;    DNA;    INV; 496 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-496
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 718-718 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 496 BP; 153 A; 126 C; 127 G; 90 T; 0 other;
     tgttgcgagg caacctaaat aaagtaaccc gacctcgcga catcgccgac tagtcagaat        60
     cccaaggatt ctgactaacc cgagaattaa aatatgtaat taaaatatga attaaaaata       120
     ataaagaata atgcgcgaac gcgccgattg caaccgatgt gcaattcggc aaggacgctg       180
     actccgacaa cacgtgtcga aacgctgacg caccaaacaa cgtttcgaca cgaggacgcg       240
     ccgaggccgc gtaacagcgg accgataaaa gaacgacgag agtatcaggc gcgggcttag       300
     aatcagaggc gcggacgcac gagtaccgac gcgtaggatc gtaaggaagt gtgatacgac       360
     agtggtgggt gactcgaaat tagcgaacac ccaagtcggt taaataaagt gttttatttg       420
     ataacaatgt gtggttgtgg cccccccttc ccccttccga cacgcactcc cgcgttgcgc       480
     ccggagcggc acaaca                                                       496
//
ID   Gypsy-23_RPr-I repbase;    DNA;    INV; 1713 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, internal region: consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-23_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1713
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3431-3431 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(288..1109,1113..1463)
FT                 /product="Gypsy-23_RPr-I_1p"
FT                 /translation="MMEWLTEKTLEQVLKEKRAMEAAAAAGIKAKXAKLXE
FT                 LQELEQEELKLKQQKERLMLEAELAEVKARNQVLEEYEAGRRVSKSPIVSG
FT                 IWGPNRQSVNYQATYNGIGLTIXRGSGTYGWVQRNWTLVEKSKDKVNYKTE
FT                 EDLEKIDSAGSKLPNSEILDHEHKRRIEEKFIELEAVAEHQVYNQDEIETK
FT                 VSANSTMLMANDSKLVEQPRNECGRIIVRETHQIAAAQQEKNARLREAFGI
FT                 TEPFEDARSGNDINVDTKKYPLVHTPLHRLPEMGQSRKKKKRRRQSETKET
FT                 EHNRQVFLPGRRPRIKXNTRRSGRKKRNTNGRHQSLLRNALQRHQTDLVVE
FT                 DYRRENGIANVNIVVEASQYLLREEVEAQIGTERVEVIIGHQKERRGR"
XX
SQ   Sequence 1713 BP; 633 A; 247 C; 422 G; 406 T; 5 other;
     gtttcacatt tcttcaaggt ggacttgtta gaagattaga agattctaat tagagggact        60
     atttaagttg taagtttatg gacaatattt atttaattta taattagtat ttgttaggtt       120
     gctagtagta acgtgaatgt ttgtctttag ttttatgcgt ttaatcatat ggtattgttg       180
     tttttgttta tattaatatt wttgttttgg ttgtttatat tgttcattgt gtatttgaaa       240
     atttgcaagg tttttgtttc ttcgattgtc aatagaagaa aactatcatg atggaatggc       300
     taacagagaa aactttagaa caagttctta aagaaaaaag agccatggaa gcagctgcag       360
     cagctggaat aaaggcgaag gwggccaaac tgaawgagtt gcaggagtta gaacaggagg       420
     agttgaaact aaaacaacaa aaagaaaggc tcatgctgga agcggagtta gcggaggtta       480
     aagctagaaa ccaagtttta gaagagtatg aagcaggaag aagggtatcg aagtcgccaa       540
     tagtcagcgg tatttgggga ccaaacaggc aatctgttaa ttaccaggcc acgtataatg       600
     gaattggtct aaccatccma cggggatctg gaacttatgg ttgggtccaa aggaattgga       660
     cattagtaga aaaatctaaa gataaggtta attataaaac tgaagaagat ttggagaaaa       720
     tagattcagc tggcagtaaa cttccaaata gtgagatact tgatcatgaa cacaagagga       780
     gaatcgaaga gaagtttatt gaattagaag cggttgcaga gcatcaagtc tataatcaag       840
     acgagataga gacgaaagtt tcagccaaca gtacaatgct tatggcaaat gattcaaaat       900
     tggtagaaca acccagaaac gaatgtggac gaattattgt ccgtgaaacg catcagattg       960
     ctgcagctca gcaagaaaag aatgcaagac tgagagaagc tttcggaatt actgaacctt      1020
     ttgaagatgc acgaagtggt aacgacatta acgtcgacac taagaaatac ccactggtcc      1080
     atacacctct ccatcgccta ccagaaatgt aagggcagag ccgaaaaaag aaaaaaagaa      1140
     gaagacaaag cgaaacaaaa gagacagaac acaatcgcca ggtgtttctt ccaggaagaa      1200
     gaccaaggat aaagmaaaac acaagaagaa gcggaagaaa aaagagaaat acaaatggcc      1260
     gccatcaaag tttactaaga aacgcacttc agagacacca aacggatctc gtcgtagaag      1320
     attatcgccg agaaaacggt atagcaaatg taaacatagt agtagaagca agtcaatatc      1380
     tgttgagaga ggaagtagaa gcgcaaatag gaaccgaacg agtagaagta ataatcggcc      1440
     atcaaaagga aagaagagga aggtagcgga agttgccacg aagaagacta gagggtctgt      1500
     gtcaccgcaa aaagtagtaa gaggcatgat agatctggaa gcaggagtca agaaaagaac      1560
     agggataacg gcagtgaaga aggttgcgcc agaagggttg tggtaaagta caataggtcc      1620
     gagtttggga taccattatt caagttgatt tgtcatgagg acgaatttcg cagttaagtc      1680
     gttgaaacat cccgatcgtt tcaaggtgga ggg                                   1713
//
ID   Gypsy-23_RPr-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-23_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-364
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3432-3432 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 364 BP; 109 A; 43 C; 71 G; 141 T; 0 other;
     tgttagtgca ccacatatgg gtttatattt tagaataaca tatgtttcta attagagaac        60
     tggaataact atcatatgat tagtttgtta agaacattat tagtattcag ttttgcagta       120
     tattttgtat ctagttttgg gttttggatc cggagaagga gacaaatgtg gtaatgccat       180
     attcattgtt aatttgttag cataagttct attctcttat attcatataa gtacaaaata       240
     tttattgttc atagaaacga gttacgagtt acgagttcga gttgcgagtt ctgagttgag       300
     aattgtttgg ttgaataaac tccgttgcac agaatcctgt tgttttgatc tggatccaaa       360
     taca                                                                    364
//
ID   Gypsy-23_SI-I repbase;    DNA;    INV; 4401 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_SI_;
KW   Gypsy-23_SI-LTR; Gypsy-23_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4401
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 436-436 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3398-3853] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1674..2672
FT                 /product="Gypsy-23_SI-I_2p"
FT                 /translation="METPLKEELQRLESQDIIERVHLSDWSTPVVIVKKPD
FT                 GRIRLCADYSTGVNRALRDNTYPLPNTDNIITKVNGNSYFSVLDLSDAFLQ
FT                 IEVAEDHRDITTITTPKGVFRFKRLPFGIKTAPAIFQQAINHTLAGLEGVY
FT                 AYIDDVIIMGSTQQEHDKRLRATLQRLEERGWKLKPSKCRFALQEIKYLGI
FT                 IINESGISADPEATRAITEMPKPSCVAEVQTFLGMVNHYGKFIPHLHQVKK
FT                 PLEDLTRKNQSWSWDSQHDIAFQRIREILLSPLLLEHFDPSKTLIVAADAC
FT                 STGIGGVLLQRDSDGRERAVTTCLKASPIHSATIHNSKKKL"
FT   CDS           2615..4381
FT                 /product="Gypsy-23_SI-I_1p"
FT                 /translation="MSQSLTDSQRNYSQLEKEALALVTAIERFHKFLWGRK
FT                 FILQTDHKPLIALLQTENTKGLKPTTAARLKRWAIRLLGYDFKIEYVRTQD
FT                 FGQADALSRLIEKFRHDNLEDLQVASIRLTENEIKQIRDSSIDKFGSNLRQ
FT                 KLKAATNEDPDLKSVMEAIRNNKIPTQNSSTVNHYIKRLDCLTIVEDTLLL
FT                 GDRVVIPKSLQPDILSSLHKGHPGIRRMKQLAREYVYWPKLSDDIERLVKQ
FT                 CDACALTRKLPVKVPINPWPTPTRPLERLHLDYAGPINGQYLLIFVDAYSK
FT                 FIEVAITPTISATRTVELCREVFSRYGPPEVLVSDHGTQFTSEIFSKFCKD
FT                 MQILHIFTAVNHPQSNGQAERMVDTVKRAIAKNPTGWRQELQDFLYSYRYT
FT                 PCSATPDGRSPAELFFGRRISSPFSKLFPNTTKSYSPPPTVPSHKQLEMQE
FT                 QFSQHHGAQERTLKPGDRIVVALNNKREQGYITAALSKTRYTIRLDNGKSI
FT                 ERHINHIWEGGSPLSSPSPAVSDDWMFYETQVDRNTPDVPTDPDPPAAPPE
FT                 APEAPGDLTEAIPGITPTRPVRCRIQPKRLILDPKSKSYTQW"
XX
SQ   Sequence 4401 BP; 1353 A; 1193 C; 850 G; 997 T; 8 other;
     cmcgcccatt tatcgggacc caacaactgg cgctgcgatt tcttatctga accgactcgt        60
     ctcgtccgca ccacgtgtct ctacgcatag aggaaacatt ccgcaatcat gtcgataacg       120
     caacttgagg ctcttacagc tgcaatcaac agcctcctgc aacttcaatt gcagaaagag       180
     caatctcaaa gtgagaatcc aagatctaca attccgccga tcgatgtata taaccagctc       240
     agtgcccgca tcgagaaata cgccttcgat accggcmccg gcaccgacca ttcgcaaaat       300
     ggctgccacg tcacgagtac acactcgtca ccgagacgga agtgctcccc gcagaaatgc       360
     gtactcgcct tcttttagaa aaattaggcc aagcagaata cgacaggcta gtggaccacg       420
     tcgcactaat agacccgtcc aaaatgaagt tagaagawmt tatcacaacg ctgaaaaacc       480
     ttttccgcga taagatatcg ctcacacgcc gccgtattga aatcttaaac cacaggtatg       540
     aaaaatcatt accgatttcc gagcatattg atcgcataaa tcgtttcgct tccgagttcg       600
     agcgcacaaa gctcacagac gacagtctca gagtcttact tcttttacaa tcactmtgtt       660
     actcccgcga taacgacgac ctcaagaaat tagctttgcg catcgtcgag aaaaaccaag       720
     acgtcactct caaagacgtc gccgcggaac ttgaggcgca catgaacgta acctcaaaca       780
     tgaaaattct csaaaacccg actaacgtgt ctacgtcttt aacacatgcg gtgcgcgcca       840
     aacaaaaaaa caagaaaggt ttgaaattag aatcaaaaaa gcaatccggc aaaccgaaag       900
     acgcctctaa ccaatcatcc gatccgtcaa aatgcaacgg atgtggaggc tcgcattttc       960
     gctcaaagtg ttcgtttcgc gacgcgtcat gcctcaaatg ttcaaagaaa ggtcacatcg      1020
     cgaaagtatg ccgctcgcaa gctaaaatcg accaaccttc ggccgataaa tctgatcacw      1080
     gtgacaataa tactaatcta acaatccagt cgatcacttc gaggaataaa catcgtcgca      1140
     tctatatccc tacgcaaatc ttcggtaaaa ccgtaaattc ccagtttgat acgggatctg      1200
     acgtcacaac tataggcaaa gacacgtkga tacgcctgaa cagaccaact ctcgaggctg      1260
     gcaaatccat agatcacgcc ggtggtaatc ctctgaacac gctcggcaga ttcacgtgta      1320
     agatacacgc tgccaaccgc aaaagtgacg taacaataaa tgtcgtctcg cgtaacgacc      1380
     ttaacttatt cggtttaaac gcgattgaca aacttaattt atggtccgta cctctcaata      1440
     aatacaggaa gcccggcata aatactaatc agtgcgcagc tatcactcac aataaatcag      1500
     actccctcgt cgagtcttcc tctttgaaca atgcatttcg tgatcaaatc ataaaagaat      1560
     ttcctacact cttttctccc ggtcttggta aatgcaacag ctttcgagca aagttcgtgc      1620
     taacagagga agctgtcccg gtccaaactc catgtcgaca gatcccgtac gcgatggaga      1680
     cacctctcaa agaagaactt caacgtctag agtctcaaga catcatcgag cgagtccacc      1740
     tgtcagactg gagcactcct gtagtcattg taaaaaaacc ggacggcaga atcagattgt      1800
     gtgctgatta ctctacaggc gtcaaccgcg cgctccgaga caatacgtat cctttgccaa      1860
     atacagataa tattatcact aaagtaaatg gcaatagcta tttcagtgtt ttagatctca      1920
     gcgatgcctt tctccaaata gaagtcgccg aagaccatcg tgacattaca acgattacca      1980
     ccccaaaagg agtattcaga tttaagcgat tacccttcgg catcaagacg gcaccagcta      2040
     tatttcaaca ggccataaac cataccctag ccggcttgga aggcgtctat gcttacattg      2100
     atgatgtaat aatcatgggt tccacccaac aggaacatga taaacgcttg cgcgccaccc      2160
     tccaacgact agaagaaaga ggctggaaac tgaaaccaag taaatgtcgt tttgccctac      2220
     aggaaattaa gtaccttggc atcataataa atgaatcagg catatccgct gacccagaag      2280
     ccacacgcgc gatcactgag atgccaaaac cttcgtgcgt ggctgaagtc caaacctttc      2340
     taggaatggt aaaccattat ggaaaattca tccctcactt acatcaagtc aagaaaccac      2400
     tcgaggatct tactcgtaaa aatcaatctt ggtcgtggga ctctcaacac gatatcgcct      2460
     ttcaacgtat cagagagata ctgctcagtc ctcttctcct ggaacacttc gacccctcca      2520
     aaactcttat tgttgcagcc gacgcttgct caacagggat aggtggagta ctccttcaac      2580
     gagattcaga tggacgtgaa cgcgctgtta ccacatgtct caaagcctca ccgattcaca      2640
     gcgcaactat tcacaactcg aaaaagaagc tctagcgctg gtcacagcaa tcgaacggtt      2700
     ccataaattc ctctggggaa ggaaattcat tctccaaacg gatcataaac cgctcatcgc      2760
     acttctgcag acagaaaata ctaaaggtct taaacccact acagcggctc gtctcaaacg      2820
     ctgggctata aggttgctcg gatacgactt taaaatcgaa tacgtccgca ctcaggattt      2880
     cggtcaagca gacgcactct ctcgtctcat agaaaagttc cgtcacgata accttgaaga      2940
     tcttcaagtt gccagcattc gtctgacaga aaatgaaatc aagcagatca gagattcttc      3000
     tatcgataaa ttcggctcaa atcttcgcca aaaactgaag gctgccacaa acgaagatcc      3060
     agatctcaaa tcggtgatgg aggccatccg gaataacaaa attcccacac aaaactcctc      3120
     tacagtgaac cattatataa aacgacttga ctgcttaacc attgtcgagg acactctgtt      3180
     acttggagac agggttgtca ttccaaaaag tttacagcca gatatccttt cgtctcttca      3240
     caaaggccac cctggtatca gaaggatgaa acaacttgca cgcgaatacg tgtactggcc      3300
     aaaactctcc gacgatattg aacgccttgt aaaacaatgc gatgcatgcg cgttaacacg      3360
     taagcttcct gtcaaggttc caatcaaccc atggccaact cctactagac ctctagaacg      3420
     tctacatttg gactatgctg gacctatcaa tggacaatat ctactcatct ttgtggacgc      3480
     atactcaaaa tttatcgaag tcgccatcac tccaactatt tctgctactc gcaccgtcga      3540
     actttgccgt gaagtattct cgcgttatgg accccctgaa gtcctagtaa gcgatcacgg      3600
     aacacagttc acgtcagaga tcttctcaaa attttgcaaa gacatgcaga tcttacatat      3660
     tttcaccgct gttaaccacc ctcaatctaa cggccaggcc gagagaatgg tggacacagt      3720
     aaaaagagcg atcgctaaga atccaaccgg ctggagacag gaacttcaag acttcctgta      3780
     tagctacaga tacactccat gctctgcaac cccagatgga agatctcccg cagaattatt      3840
     ttttggcaga cgaatttcct cacccttctc caaattattt cctaacacga ctaagtccta      3900
     ctcccctcca ccgactgttc cctctcacaa gcaactcgaa atgcaggaac aattcagtca      3960
     acatcatgga gcacaggaaa ggactctcaa accaggagat cgaattgtgg tagctctcaa      4020
     caataaaaga gaacaaggct acattaccgc ggccttatct aaaacacgct acacaattcg      4080
     tctagacaac ggaaaatcta ttgaacgaca catcaatcac atttgggaag gaggtagccc      4140
     cctgtcgagt ccgagccctg ctgtctcgga tgattggatg ttctacgaaa cacaggtaga      4200
     ccggaacact cccgatgttc cgacggatcc cgaccctccg gccgctccgc cagaagcccc      4260
     tgaagcacca ggagacctga cggaagctat accgggcata accccgacta gacccgtccg      4320
     ttgcaggatc caaccgaaga gactcatcct ggaccccaag tcaaagtctt acactcagtg      4380
     gtaacctctt aagaggggag a                                                4401
//
ID   Gypsy-23_SI-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_SI_;
KW   Gypsy-23_SI-I; Gypsy-23_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-206
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 437-437 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 206 BP; 40 A; 62 C; 55 G; 48 T; 1 other;
     tgttggggcc cgccgagcaa taggctsgac cttgtaaggc gtccccacga gggcgcccag        60
     gcagttcgag taacatggcc gccgtggcta acacgcgctc agttacgctc cgtactgatt       120
     tgctagaata tactctctcg tgtgatatcg agtgtgcacg tcgtcattac ggaatcctcg       180
     cggactcatc cttacctccc gtgaca                                            206
//
ID   Gypsy-23_SiCu-I repbase;    DNA;    INV; 4045 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4045
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5046-5046 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..3988
FT                 /product="Gypsy-23_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSKESFTQPTPFSFQPKDWPAWKRRFEHYHNLAEMEK
FT                 KPDAFQISALLYSMGEKSDEVLSTLKFASADERKKYEKVMAAFDAHFVGKR
FT                 NIVYERAMFWSRSQRGGETVEEFVRVLHTMSEHCDYRDLREDLVRDRLVLG
FT                 VADRKLSEKLMLMEALTLEKAVEVARQWETVKRETAELNGKGSLDVDRVHQ
FT                 QSQKNKKPWRGKGKKNSEDQDGEKQQQQPTESKKPTCWNCGLEGHKSPEVD
FT                 KCPAAKATCNKCQKKGHYAKCCKDKNVKQVSVQDGGKEDKFLFQIKTSESE
FT                 RKKRWRQVIQIRGKDIEMKLDPGADVTVLPFYTFKKNFPKVRLKPTNICVR
FT                 GAAEDPLEIVGTFTADLKHGDKMFQEEIFVAKRTGEALLGLDSCEELGLVV
FT                 RVQEVKEDPETRVNAQVEFPTLFQGLGKLKQDYAIKLKPDAKPYAVNFSRR
FT                 VPLPMMQKLKAELEDMVAKEVIEPVDEPTPWCAPLVITAKPNGSIRICVDL
FT                 QKLNECVERELHMLPMVEHELGKLQGAKIFSKLDANSGFWQIPLSKETAKL
FT                 TTFITPYGRYFFKRLPFGISSAPEHFQRRMNEILRGLEGVLCLMDDILVFG
FT                 STQEEHDERLRSALSRLEKSGLSLNKSKCQFGVKKVRFLGHIVDDQGIHPD
FT                 EEKVKAVMEMGEPKNVKEVRQILGHLNYLAKFIPKMSATLNPLHGLLKADA
FT                 EWVWGQPQKAAFLEVKKFLSSNPVLAAYDMKKETVVSADASSFGIGGVLKQ
FT                 KQEDGSWRPVSYASRTLTDAETRYAQIEKEALGITWACDRFRDFLLGLEFS
FT                 VETDHKPLLAIFKTKELGELTPRLQRFRMRMMNFSFKIFHTPGKDLLAADF
FT                 LSRHPLESVDPYELESEVQEHVRFVVANVETSDDRLQTIAISQKQDAVLKE
FT                 VMEYLVSGWPDKKKIGPELKPYYEVRHELADVDGLLMRDCRLVIPYPQRKE
FT                 ILSRLHEGHFGINKCRARARCCVWWPGVSSDIEEMIRRCEVCAQERPAKHE
FT                 PLMPSEFPERPWQKVGMDLFHFDGKWHLVVCDFYSRYPEVVTLSNMSGDLV
FT                 IKHLKXIFARHGVPEEVFSDNGTQFSPNAASLFQEFSKDYGFRHRTSSPKF
FT                 PQSNGFAECAVKIVKNAMKKNVDVQKALLEYRATPLANGYSPAQLLFGRRL
FT                 RTTLPAAPQILVPDPVDPTKLRXCEDKRRESQKXNXDKRHGAKEKPDFLRG
FT                 EKVWIRDRREWGVIVGKADSPRSYWIKTDSGKYRRNSFHLESAGQIENEAF
FT                 DVDIXXEQDPVEAQQPEEVPPXEIPERRRSQSRFGRRYKPVDRFXPN"
XX
SQ   Sequence 4045 BP; 1145 A; 821 C; 1166 G; 898 T; 15 other;
     tggtggcagc gtggttttta gtgcggattt ttaattaatt tgaagaatta attaaaaggt        60
     gaagatgtcg aaggagtctt tcacccaacc gacaccgttc tcgttccagc ccaaggattg       120
     gccagcgtgg aagaggaggt tcgagcatta ccacaatttg gcggaaatgg agaagaaacc       180
     ggacgcattc caaatcagtg ctcttctgta ctccatgggg gaaaaatcgg acgaggtgct       240
     ctccactttg aagtttgcca gtgctgatga gaggaagaaa tatgagaagg tcatggcggc       300
     ctttgacgct catttcgtcg gaaaacgaaa cattgtttac gagcgtgcca tgttttggtc       360
     cagaagtcaa cgcggagggg aaacagtgga ggagtttgtt cgagtcctac acacaatgtc       420
     ggagcattgt gattatcgtg acctgcgtga agaccttgtt agggatcgcc tggtacttgg       480
     agtagcagac cggaagctgt cagaaaagtt gatgctgatg gaggcgctga cgctggaaaa       540
     ggctgtggag gtggcacgac agtgggaaac tgtgaagcgg gaaacggcag aactgaacgg       600
     gaaaggatcc ttagacgtgg accgtgtgca ccaacagtct cagaaaaata agaagccctg       660
     gaggggaaaa gggaagaaga attccgaaga ccaagacgga gaaaagcaac agcagcagcc       720
     aacagaaagc aagaagccga catgttggaa ttgtggattg gagggtcaca agtcaccgga       780
     ggtggacaag tgtcctgcag ccaaagccac ctgcaacaag tgtcagaaaa aggggcacta       840
     tgcaaaatgc tgcaaggaca aaaatgtgaa gcaagtttct gtccaagatg gaggaaagga       900
     agacaagttc ctgttccaaa taaagacatc ggaaagtgag cggaagaaaa gatggcgcca       960
     agtaatccag atcagaggca aggatatcga gatgaagttg gatcccggag cggatgtcac      1020
     agtcctgcct ttctacactt tcaagaagaa ttttccgaaa gttcgtctga agccgaccaa      1080
     catctgtgta agaggagctg ctgaagaccc cctcgagatc gttggtactt tcactgctga      1140
     cctaaagcat ggagacaaga tgttccagga ggagattttt gtggctaaga ggactggaga      1200
     agccttattg gggttggatt cttgcgaaga actcgggcta gtggtgcgtg tccaggaggt      1260
     gaaggaggat ccagaaacca gagtgaacgc tcaagtcgag ttcccgacgc ttttccaagg      1320
     attggggaag ctgaagcaag actacgccat caagttgaag cctgacgcga agccgtatgc      1380
     tgtcaacttt tccagaagag ttccactgcc gatgatgcag aaactgaaag ctgagttgga      1440
     agatatggta gcgaaggagg tgattgagcc cgttgacgag ccgaccccgt ggtgcgctcc      1500
     gctggtgatt acagccaagc caaatgggtc aatccggatc tgcgtggacc tccaaaagct      1560
     gaatgaatgt gtggaaaggg aactgcacat gctgccaatg gtcgaacacg agttggggaa      1620
     actgcaagga gcgaagattt tctccaagct tgatgccaat tctggatttt ggcaaattcc      1680
     tctcagcaag gaaacggcaa agttaacgac gttcatcacc ccgtacggtc gttacttctt      1740
     caagcgcctg ccgtttggga ttagttcagc accagaacat ttccaaagga ggatgaatga      1800
     aattttacga ggattggagg gagttctttg cctgatggac gacatcctcg tatttggatc      1860
     tactcaagaa gaacatgacg agaggctcag aagtgcttta tcaagattgg agaaaagcgg      1920
     cctgtcattg aacaagagca agtgccagtt tggagtgaag aaagtgcgct ttcttggcca      1980
     catcgtggat gaccaaggaa ttcacccaga cgaggaaaag gtgaaagcag ttatggagat      2040
     gggagaaccg aagaatgtga aggaagtgag gcagatcttg ggccatttaa attatctggc      2100
     gaaatttatt cccaaaatgt ctgcaactct caaccctctc catggactac tcaaggctga      2160
     tgctgaatgg gtttggggac aacctcaaaa agctgctttc ctggaagtca agaaattcct      2220
     ttccagtaat cccgtgcttg ctgcttacga catgaagaag gaaactgtgg tgtcagctga      2280
     tgcttcgtca tttgggattg gaggagtttt gaagcagaaa caagaagacg gtagttggag      2340
     accagtcagt tatgcttcac gtaccttaac tgacgcggag acaaggtacg cccaaattga      2400
     aaaggaggct ttggggatca catgggcatg tgatcgattt cgggacttcc tgcttggact      2460
     ggagttcagc gtggaaacag accacaagcc tcttctcgcc attttcaaga caaaggaatt      2520
     gggagaactg acaccacgat tgcagcgttt ccggatgcgg atgatgaatt tctcgttcaa      2580
     gatttttcac acacccggaa aggatctact cgctgcagat tttttaagcc gccacccatt      2640
     ggaatctgtc gacccgtacg agttggagag cgaagttcag gaacacgtgc ggtttgtkgt      2700
     tgccaatgtg gagactagtg atgaccgtct ccagaccata gctatctcgc agaaacagga      2760
     cgctgtcctc aaggaagtta tggagtatct agtgagtggg tggccggaca aaaagaaaat      2820
     tggaccagaa ttgaagccgt attatgaagt gagacatgag ttagcggatg tagatgggct      2880
     gctcatgcgt gactgtcgcc tcgtgatccc gtatccccag cggaaggaga tattgtcgcg      2940
     gctacacgag ggtcattttg gaatcaacaa atgtcgtgcg agagcaagat gctgtgtttg      3000
     gtggccagga gtctcctcgg atatcgaaga aatgatccgg agatgtgaag tgtgcgcaca      3060
     ggagcgacca gccaagcacg aaccactcat gccgagtgaa ttcccagaaa ggccatggca      3120
     gaaagtgggc atggacctgt tccattttga cgggaagtgg catcttgtag tctgtgactt      3180
     ttattcgcga tacccggaag ttgtcacctt gtccaacatg agtggwgatc tggtgatcaa      3240
     gcacctcaaa gsaatttttg cgagacacgg agtcccggag gaggtgttca gtgacaacgg      3300
     cacgcagttc agtccgaatg ctgcgtcgct attccaggaa ttttcgaagg attacggatt      3360
     cmggcacagg acttccagtc ccaagttccc ccagagcaat ggatttgctg aatgtgccgt      3420
     gaagatcgtg aagaacgcga tgaagaagaa tgttgatgtg cagaaggcgt tgttggagta      3480
     ccgagctacc ccattggcga atgggtattc gccagcacaa ctgctgtttg gaaggagatt      3540
     gaggaccacc ttgccagctg cgccccaaat tcttgtaccg gatccagtag accccaccaa      3600
     gcttcgtgas tgtgaagata aacgcagaga aagtcagaag awaaacttkg acaagcgaca      3660
     cggagccaag gaaaagcctg atttcttgag aggggagaag gtgtggatac gtgacagacg      3720
     tgagtgggga gtcatcgtgg ggaaagcgga ttctccaagg tcktactgga tcaagacgga      3780
     tagtggaaag taccggagga actcmtttca cctkgagtct gcggggcaga ttgagaatga      3840
     agcgtttgac gtggacatcg asktggagca agatcctgtm gaagcccagc agccagagga      3900
     agttccccca scggaaatac cagagcgaag gcggagccag agtcgttttg gtcgtcgata      3960
     caagcccgtg gatagattta akcctaattg atatttgaaa tatattaatg atgattgatg      4020
     tatgtatgta tcttttgagg ggaga                                            4045
//
ID   Gypsy-23_SiCu-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   11-DEC-2019 (Rel. 26.09, Created)
DT   11-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-311
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5100-5100 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 311 BP; 76 A; 49 C; 77 G; 109 T; 0 other;
     tgtggcgggt ttgtttaagt tatgtttggc atgcaatgca acatcgagaa tgttcttgtt        60
     gcattgccgt gtattgtgta ttgtgcgtgt gtctgcctgg cagtctggga agagcagcac       120
     actcattctt gtcttgtcgg tctagagtcg tggtcgtgtc ttgttgaacg actgatgatg       180
     ttaattgaat aaagtccata gttaattgtt aattaaccat tcgccttagt agtgctcatt       240
     gattgaacag attgtagctt atcagtagga taagctagca tcgtgttatt agacagaaca       300
     ataacattac a                                                            311
//
ID   Gypsy-23_SiOr-I repbase;    DNA;    INV; 3967 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-3967
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 359-359 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..3955
FT                 /product="Gypsy-23_SiOr-I_1p"
FT                 /translation="MDVRLPEQMKFTGNISENFKLFKQNFEIFLLAKGKQE
FT                 VQDEVKVALLLNCMGQEAINVYNTFSLNEAEKKQYQKVIDEFGKYCNPKKN
FT                 VIYERYMFFSRKQEEGEGIDKFVTDLKKLAESCEFNEQKDSLIRDRIVLGI
FT                 TNLRLQERLLTREDLNLEKAINECRVAEISKLQIDEVQKDQKQVYGVRKEE
FT                 RRGYEKENKLKKNEGNKFDCRKCLSKHGPKQCKAYGQKCFKCGLVNHFAKA
FT                 CTRKPVKKEVKEVSKEKGDDNVNVDKFFVNSINTQNCKALYKEVDIKGNIV
FT                 RFKIDTGSEVDILPLKLYKSHLNDKKLESCNIILEAYGGFKIKPIGQITVN
FT                 IFNDKLKEKLTLVVADVKSEPILGLKTSNMLGFIKSIDSVVSSKELFIQNN
FT                 KSIFTGVGKCPQKCSIKLKKCCQPVAHPARRVPLAIKEELRKTLNELEQKG
FT                 IISKTDSPGDWVSNLVIIEKSNGSLRLCLNPQDLNKAIQRNFYTIPTIEDI
FT                 SSKLCNKSWFTVLDFKDGFYQVELDHKSSELCTFSTVFGCYKFLRLPFGLT
FT                 NAPEYFQKVNEENFGDIEGVIIYFDDLLIAANTEQEHDAILKKVIERAQML
FT                 NIKFNQTKLQYKVNEVNYVGHVFCKDGMKPSKDRVKAIQAIENPTNLKELQ
FT                 RVLGMLNYLRGFIPNFAKVTSPIRELLRKDVHFQWNQKHTEVLNKLKDILA
FT                 SDLVLGTFQSDKPIVIQTDASKDGLGCCLMQDKPTYHGSRSLTAAEKNYSQ
FT                 CEKELLAVVFAVSKFHHFIYGRDVKIITDNKPLLGIMKKDLSKVPSPRLQR
FT                 LKLKLIRYNLNFEYCPGKHMYIADLLSRSYIKDEVQDDPDMKEIVHSIEKH
FT                 FSISEERRAQFEKAIQHDSDLSKLIEYIKNGWPKYFKMIPNSLRPYWQYQN
FT                 DITLSNNLLLLKDRLIVPRTLIQDMLDLLHETHFGMTKTKQRAKEMLYWVN
FT                 MNAEIEKLIRNCQICERYSPKLCKEPMIPHEIPNRPFKKVASDICDYGGKS
FT                 YLILMDYYSKWLEIKQMKGKTSYDVINALKEIFSIHGIPDELISDNMPYNS
FT                 YECRQFAKQWNFKICTSSPHYPKSNGLAEKGVGIAKMMLRKDQDLMLSLLN
FT                 YRTTPIVGLNLTPSQLLMGRNLKTKIPIDENKLLPNSYNNSNIKNEICRKR
FT                 ELDKKYYDLNCKVRNSFNEGQFVVIQNQNNNEWEAGQIVKPVPDSPRSYIV
FT                 KDSRGAIVRRNSSHLKSSESGSVIDQNTCCDSADQNCDSSSEIVSVHQENE
FT                 RPKRQIKNPVKFKDYQLF"
XX
SQ   Sequence 3967 BP; 1568 A; 495 C; 794 G; 1110 T; 0 other;
     tggtggcagc ggaaaaataa aagccagcga gaaaagaagc caaaaaagtc aaggattgta        60
     agaatatttc aggaagttgg tagtcactgt ggtaaacacg ttgaaaaaag aatcaaaaat       120
     ggacgtgagg ctgccggagc agatgaagtt tacgggaaat ataagcgaaa atttcaagtt       180
     atttaaacaa aattttgaaa ttttcttact ggccaaaggg aaacaagaag tacaagatga       240
     agtaaaagta gctttgttgt taaattgtat gggtcaagag gcgataaatg tctacaatac       300
     gttttcactt aatgaagctg aaaagaaaca ataccagaag gtcatagacg agtttgggaa       360
     atattgtaat ccgaaaaaaa acgttatata tgaaagatat atgttcttct cacgtaaaca       420
     agaagagggt gaagggatcg acaaatttgt gacagatctg aagaaactag cggaaagctg       480
     cgagttcaat gagcaaaaag actcgctaat aagagacagg attgtcttgg gaatcacaaa       540
     tttgagacta caagaaagat tgttgactcg tgaagactta aatttagaaa aagcaataaa       600
     cgaatgtcga gttgctgaaa tatcaaagct tcaaattgat gaagtacaga aagatcaaaa       660
     gcaagtatat ggagttagaa aagaagagag aagaggatac gaaaaagaaa ataagctgaa       720
     gaaaaatgaa ggtaataagt ttgattgtag gaaatgtctc tcgaagcatg gaccaaaaca       780
     gtgcaaggca tatgggcaga agtgttttaa gtgtggccta gtcaatcatt ttgcaaaggc       840
     atgtaccaga aaaccggtca agaaagaggt taaggaggta tcaaaagaaa agggtgatga       900
     caatgtaaat gttgataaat tttttgtaaa ttctattaac acacaaaact gtaaagcact       960
     atataaagaa gtggacatta aaggtaacat tgttagattt aagatagata caggtagtga      1020
     agtagacatt ttaccattaa aattatataa gagtcattta aatgataaga aattagagtc      1080
     atgtaatatc atacttgaag catatggggg gtttaaaatc aagcctattg gccagataac      1140
     tgttaatatt tttaatgaca agttaaaaga aaaattaacg ttagtagtag ccgatgttaa      1200
     gtctgagcca atattaggtt tgaaaacttc taatatgcta ggttttatta aaagcataga      1260
     ttcagtagtg tctagtaaag aattgtttat tcaaaataat aagtcaattt ttactggtgt      1320
     aggtaaatgt cctcaaaagt gttcgataaa gcttaaaaag tgttgtcaac ctgtagcaca      1380
     tccagcaagg agagtaccat tagcaattaa ggaggagtta agaaaaacat tgaatgagct      1440
     agaacagaaa ggtataatta gcaaaacaga tagtccagga gattgggtaa gcaatcttgt      1500
     tataatcgag aaatctaatg gcagtttacg gctatgttta aatcctcagg atttgaacaa      1560
     ggccatacaa agaaattttt atactattcc cacaatagag gatataagtt caaaattgtg      1620
     taataaaagt tggtttactg tattagattt caaggatggt ttttatcaag ttgaattaga      1680
     tcacaaatca agtgagttgt gcacgttcag tacagtgttt ggttgctata aatttttgag      1740
     actacccttt gggcttacta atgctcctga gtattttcaa aaagtaaatg aggaaaattt      1800
     tggggatata gaaggtgtta taatatattt tgatgatttg ttgatagcag caaatactga      1860
     acaagagcat gacgctatac tgaaaaaggt gatagaaaga gcacaaatgc taaatataaa      1920
     atttaatcaa acaaagttac agtataaagt aaacgaagta aattacgttg gacatgtttt      1980
     ttgcaaagac ggaatgaaac cgagtaaaga tagagtaaag gcaattcagg ctatagaaaa      2040
     tccgactaac ttgaaagagt tacagagagt tctcggaatg ttaaattatt tgagaggatt      2100
     tattcctaat tttgcaaaag taacaagtcc aataagagag ttattgcgta aagacgtaca      2160
     ttttcagtgg aatcaaaaac atacagaagt attaaataaa ttaaaagaca tactagctag      2220
     tgatcttgta ctagggacat ttcaaagtga caaacctata gttattcaga cagatgcgtc      2280
     aaaagatgga ttgggttgtt gcttaatgca ggacaaacca acatatcatg gttcaaggtc      2340
     actaacagca gctgaaaaga attattcaca gtgtgaaaaa gaattgcttg ctgtggtatt      2400
     tgctgtaagt aaatttcatc attttattta tggcagagat gtcaaaatta taactgataa      2460
     taaaccattg ttgggaataa tgaagaaaga cttaagcaaa gtaccatcac caaggttaca      2520
     aagactcaag ttgaaactaa ttagatataa tctaaatttt gaatattgtc caggtaaaca      2580
     tatgtatatt gctgatttgt tgtcaaggtc atatattaaa gatgaagtac aagatgatcc      2640
     agatatgaaa gagatagtgc atagtattga gaagcatttt agtatatctg aggagagaag      2700
     agctcaattt gagaaagcta tacagcatga tagtgaccta agtaagttaa tagagtatat      2760
     aaaaaatgga tggcctaaat attttaagat gataccaaat tctttaagac catactggca      2820
     atatcaaaat gatataacat tatcaaataa cttattatta ttaaaggaca gattgatagt      2880
     tccaagaaca ttaatacaag acatgttaga tcttttacat gaaacacatt ttggaatgac      2940
     aaagaccaaa caaagagcca aagaaatgtt atattgggta aatatgaatg ctgagataga      3000
     aaagttaata agaaattgtc aaatttgtga gagatattca ccaaaactct gtaaagaacc      3060
     aatgatacca catgagatac ctaatagacc atttaaaaaa gttgctagtg atatatgtga      3120
     ctatggaggc aaaagttatc tgattctcat ggattattat tcaaaatggc tagagattaa      3180
     acaaatgaaa ggaaaaacat catatgatgt gattaatgca ctgaaagaga tattttcaat      3240
     acatggtata cctgatgagt taatttcaga taacatgcca tacaactcat atgaatgcag      3300
     acagtttgcc aagcaatgga atttcaaaat atgcacaagt agtcctcatt accccaagtc      3360
     caatggactt gcagagaaag gtgttggaat agcaaaaatg atgcttcgta aagatcaaga      3420
     tttaatgtta agcttgctaa attatcgcac tactcctatt gtagggctga acctgactcc      3480
     ttcacaattg ctaatgggac gaaacttaaa aactaaaatc cctattgatg aaaataaatt      3540
     gttaccaaat agttataata attctaatat taaaaatgag atttgtagga aaagagagtt      3600
     agataaaaaa tactatgatt taaattgtaa agttcggaac agttttaatg aaggccaatt      3660
     tgttgtgatt cagaatcaaa ataataacga gtgggaggca ggtcagattg ttaaacctgt      3720
     tcctgactca cctaggtctt atattgtcaa agactcaaga ggcgctattg tacgtagaaa      3780
     tagttcccat ttaaaaagtt ctgaaagtgg ttcagtgatt gatcaaaata cttgttgtga      3840
     cagtgcggat caaaactgtg atagttcatc cgagatagtg tccgtacatc aagaaaatga      3900
     gcgtccaaaa agacaaatta aaaatccggt taaatttaaa gattaccaat tattttaaga      3960
     agggaga                                                                3967
//
ID   Gypsy-23_SiOr-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 392-392 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 194 BP; 67 A; 17 C; 30 G; 80 T; 0 other;
     tgttgtatct atggattatt atatgttaag tttaatctgt agcatcttga tatgacataa        60
     ccctgattga cagttaagtt agatattgct taacagaatg ttgttttgta ttgttctcag       120
     atgtttaata gtttaataaa cttagtttaa taaacgttgt atttttatta gtaaaaatac       180
     agagaaataa aaca                                                         194
//
ID   Gypsy-23_SpEx-I repbase;    DNA;    INV; 4208 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4208
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4092-4092 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..4108
FT                 /product="Gypsy-23_SpEx-I_1p"
FT                 /translation="MSTGATFGVLTTFDHSSQEWNNFKLRLEQWFIANNIN
FT                 FETDKATIKRRAILLTSLCESTFKLISDLALPNKVEELGYDAIVKLLDSHF
FT                 TPKRFGFAEKSIFYAATQRPGETHTQWAARIRGLAAHCAFKNLEEALLDKF
FT                 IMGMAPGRERDKLFVQDQQELTLAKAIDLAESVRCARQASAVPAAAAAAAG
FT                 PVAAATDGVFSISKKEKCSVCGFTNHKSSQCRYKNFKCKKCNIKGHLRKMC
FT                 PNEGRVKYVEQGTVDDGDEDGECFYNIRCTKGKPMTERVTVSGLTLEFEID
FT                 SGSAVSVISERTYNSNFKQLPLSVTKKRLYSYTGENIVTIGVVLLPISYLG
FT                 RTHTLNVYVVRGDGPPLLGRDFIREFNLELAPAAAEPATARVHVVSQQTPC
FT                 ESHISINKELCKMFPKLFSGSLGSFNKYKIDLQLKRDARPIFFKARPVPYA
FT                 LREKLDEELDRLLALGILKPVENSDYASPVVPVLKKNGSIRLCADYSVTIN
FT                 KQLVIDKYPLPTVNDLLAKLHGGVQFSKIDLSMAYNQFILNEKSQMLTCIN
FT                 THRGLFKFTRLVFGLSSAPAIFQRAMECLLSGIEGIIFLLDDILITGSNRH
FT                 QHKTRLTTVLQRLDDAGLTVQMNKCEFFKDEISYLGHIIDKHGVRKSPDKV
FT                 KAILQAPKPTNLTQLQSFLGLTNYYRNFVPDASSILSPLYDLLSKNTKWEW
FT                 TRRHNDAFVRIKNILASDRTLAHFDPNAKLILTVDASPTGLGAVLSQVGPD
FT                 ELERPISYASRTLSPAEKNYAQIQKEATAIIFGVKRFHQYLYGRSQPFVLR
FT                 TDHKPLLAIFGPYKGIPEVSANRLQRYAIFLAAYNYVIEYIGSKQNSADYL
FT                 SRAHGDDSKTETADELTECEDRAAYVNFVVDGDFPVTLNDLRRETAKDTNL
FT                 TTIKNYVLNGWPRKVTDAALQPFFNCRTQLSYESGILMRGHKVVIPPTLQE
FT                 NICRELHSSHFGVVKMKAEARKRLWFPGVDAALERVAGACAVCAALRPAPP
FT                 HAPLAPWPLPPQPFYRIHIDFLGPFHNYMFLIIVDAYSKWVECYSMASSYN
FT                 SKSVITKINEFMSRFGIPHTLVSDNGTSFTSFEFKEFCKLNGIEHLYSPAY
FT                 HPASNGQAESFVKIIKKGLKAIMLQGCNKFSIHDKIAKYLFDYRNSKNSTT
FT                 GKSPAELVFGRSLRSRLDLLNPFASPSSSTSKDLTQTVARKQSLQAKYYRG
FT                 VQRPDFKVNDLVWITKNINNNKIGWLEGIIRKKIGNVMYAVYVPQLNGEVT
FT                 RHMDQIRKRLPSSSMATGEEQDWDPDVIPDVASPATDHDEPVIQPEREEEA
FT                 TTGPVQATAAPGSDPTPPGTSPETSPCSSRVVSPFRRRAISPIFSTP"
XX
SQ   Sequence 4208 BP; 1215 A; 913 C; 1012 G; 1068 T; 0 other;
     agtggcgacg aggggactca cattttgaaa aatgtccacg ggagcgactt ttggcgttct        60
     tacaacgttt gaccactcat cacaagagtg gaacaacttt aagttgcgat tagaacaatg       120
     gtttatcgct aataatataa attttgaaac cgacaaggca accatcaagc gtcgggcaat       180
     actgttaacg tcattatgtg aatcgacatt caagcttatt agtgacctgg cgttaccgaa       240
     caaggtggaa gaattgggtt acgacgcgat tgtcaaacta ctcgacagtc attttacacc       300
     aaaaaggttc gggtttgcag agaagtccat tttctatgca gcgacccagc gaccaggcga       360
     aacgcacact caatgggcgg ccagaattag aggattggca gcgcactgcg cattcaaaaa       420
     tttggaggaa gccttactgg acaaattcat catgggcatg gcaccgggac gtgagcgcga       480
     caagttgttc gtacaggacc agcaggagct gactctcgca aaggcgatcg acttggcgga       540
     gagcgtgcgt tgtgcacgcc aggcgtcggc ggtgccggcg gcggcggcgg cggcggccgg       600
     gccggtcgca gcggccacag atggtgtctt cagtatctcc aagaaagaga agtgcagtgt       660
     gtgtgggttc accaatcata aatccagtca gtgccggtat aaaaatttca agtgcaaaaa       720
     gtgcaatatt aaaggtcatt tgcgtaaaat gtgccctaac gagggaagag tgaagtacgt       780
     cgaacaaggt actgtggacg acggtgacga agacggtgag tgtttttata atattcggtg       840
     cacaaaaggg aaaccgatga cagagcgagt gacggtcagt ggtctaacct tggagttcga       900
     gattgatagc ggttccgcgg tgagcgtaat ttcagagaga acttacaatt cgaattttaa       960
     acagttgcca ttgtcagtca ctaaaaaacg actatatagt tatacggggg aaaacatcgt      1020
     aactattgga gttgtgttgt tgcctatatc ttacttaggt cgcacacata cacttaacgt      1080
     gtacgtagtg cgcggcgatg ggcctccgct gctgggccgc gactttattc gcgagttcaa      1140
     cctcgagcta gcgccggcgg ccgcggagcc cgcgacggcg cgcgtgcacg tcgtgagtca      1200
     gcagacgcct tgcgagtctc atattagtat taataaggaa ctttgtaaaa tgtttcccaa      1260
     acttttctca ggtagtctcg gatcgtttaa taaatataaa attgacttac agttaaaacg      1320
     tgatgcacgg ccaatttttt ttaaggcgag acccgttcct tatgctctaa gggagaaact      1380
     agacgaggag cttgaccggt tattagcgtt aggcatttta aaacccgtag aaaactccga      1440
     ctatgcatcg cccgttgtgc ccgtactaaa gaaaaacggt agcattagac tgtgtgctga      1500
     ctactcggtt acaatcaata aacaattggt aattgacaaa tatcctttgc caacggtaaa      1560
     tgatttacta gctaagctac acgggggcgt acaatttagt aagatagatt tatctatggc      1620
     gtataaccaa tttattttaa atgaaaagtc gcaaatgtta acttgtatca atactcatcg      1680
     cggtcttttt aagtttacac gattagtgtt cgggttgtct agcgcaccag ccatattcca      1740
     acgcgcgatg gaatgtttat tatcaggaat tgaaggtatc atctttctat tggacgacat      1800
     tctgataacg ggctcaaata gacaccaaca caaaacaaga ctcactacgg tcttgcaacg      1860
     cttagatgat gcggggttaa ctgtacaaat gaataaatgt gaatttttta aggatgaaat      1920
     ttcataccta ggccacatca tagataaaca cggggtcaga aaatcgccag ataaagttaa      1980
     agcaattttg caagctccca aaccgacaaa cctaacacag ttacagtcgt ttttaggtct      2040
     aacaaattat taccgtaact ttgtgccaga cgcgtcatcg attttaagtc cattatatga      2100
     tttactaagt aaaaacacaa agtgggaatg gacacgtagg cacaatgacg cgtttgtccg      2160
     aataaaaaat attttagcgt ctgatagaac cctggcacat ttcgatccaa atgctaagtt      2220
     aatactaacg gtagacgcgt caccgacggg actgggtgca gttctgtcgc aagtaggtcc      2280
     ggatgagtta gagcggccca tatcgtacgc ttcccgaaca ttatcgccag cggaaaaaaa      2340
     ctacgcacag atccaaaagg aagcgacagc tatcattttt ggtgttaaga ggttccatca      2400
     gtacctgtat ggtcgttcac agcctttcgt gctcagaact gaccataaac ccctcctggc      2460
     tatatttggg ccctataaag gtattcccga agtatccgct aatcgcttgc aaagatatgc      2520
     tatatttcta gccgcatata attatgtaat tgagtacatt ggtagtaagc aaaacagtgc      2580
     agattattta tctcgcgcgc acggcgatga cagcaagaca gaaacagcgg acgagctcac      2640
     ggaatgcgag gaccgcgcgg cttacgtgaa tttcgtagtg gacggcgatt tccctgtcac      2700
     tttaaatgat ttgcgtcgag aaacagctaa agacactaac ctgaccacta ttaaaaatta      2760
     cgtgttaaac gggtggccta ggaaggttac tgacgctgcg ttacaaccat ttttcaattg      2820
     tcgaactcag ttatcttacg aaagcggtat attaatgcgg ggacataagg tagttattcc      2880
     gccgactttg caagaaaata tatgcaggga attgcatagt tcgcatttcg gcgtcgtcaa      2940
     gatgaaggca gaggctcgca agcgattgtg gttccctggc gtggacgctg cgctggaacg      3000
     ggtggcgggt gcgtgcgcgg tgtgcgcggc attgcgcccc gcgccgccgc acgctcctct      3060
     tgcaccttgg ccgctgcctc cgcaaccatt ttaccgaatt catatagatt tcttagggcc      3120
     gtttcacaac tacatgtttt taattattgt agacgcatac agtaaatggg tcgagtgtta      3180
     tagcatggca tcatcctata attcaaagtc agtcataact aaaattaacg aatttatgtc      3240
     tcggtttggt attccacata ctttggtgag tgacaatggc acatcgttta catcattcga      3300
     attcaaagag ttttgtaagc ttaacggtat cgaacatttg tattcacctg cgtatcaccc      3360
     ggccagtaat ggacaagccg aaagttttgt taaaatcatc aaaaaggggt taaaggctat      3420
     aatgttacaa gggtgtaata aattttcaat acatgacaaa attgcaaaat atttattcga      3480
     ttacaggaac tccaagaata gtaccactgg taagtcaccc gcagaattag tatttgggcg      3540
     ttcgttgcgc tcacggcttg atttattgaa ccctttcgca tcgccttcgt catcgacgtc      3600
     caaagaccta acgcaaaccg tcgcgcgtaa gcagtcctta caggctaaat attatcgcgg      3660
     tgtacaaaga ccagacttca aagttaacga ccttgtctgg ataactaaga atattaataa      3720
     caacaaaatc ggttggctcg aaggtattat aagaaaaaaa atcgggaatg tcatgtacgc      3780
     tgtgtacgtg ccgcagttga atggtgaagt caccaggcat atggaccaaa taagaaaaag      3840
     actgccttca tcatcaatgg caaccgggga agaacaggac tgggaccccg acgtgattcc      3900
     ggatgtggcg tcgcctgcta ccgaccacga cgagcctgtc atacaaccag agagggaaga      3960
     agaggcgaca actggcccag tacaagctac ggccgcgccg ggttcagacc ctacacctcc      4020
     tgggacgtca ccggagacct cgccgtgcag ctcccgcgtc gtttcgccct tcaggcgaag      4080
     ggcaattagc ccaatctttt cgacacctta gtcgacctag gactctggag tttagtttta      4140
     ttaagtagat ttaactagta cttaggcgat aagctaagcg ttatattccc tatcttaggg      4200
     gggagaga                                                               4208
//
ID   Gypsy-23_SpEx-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-171
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4152-4152 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 171 BP; 42 A; 39 C; 41 G; 49 T; 0 other;
     tgttaggttg gtaaacctag cgacgaatgc gcaccgtaat gttggtatga catgcgcggg        60
     ctgcgtaccg cgcgttcccg cctattttta aaaaataaat tagtgtgcca cagattagcg       120
     agtttgattg acgtattgca tcgttcccgt ttcccgcgca aatacattac a                171
//
ID   Gypsy-23_SpFr-I repbase;    DNA;    INV; 3896 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3896
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1857-1857 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..3731
FT                 /product="Gypsy-23_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPIGKLEPFNLSSKQWPAYIRRVNQYILLNDVKDNLK
FT                 VPMLITVVGEPTYSLMCDLCSPGFPEDKSYDELVKLVADHLEPQRSEIAER
FT                 HVFRLRRQRDGESMMEYLQDLKHLATTCNFGIMLEENPRRYINYNCDECNQ
FT                 RGHLKVMCKTVRVRGSGRSSRQNFVSDDDTEDEDLFSIELASKGNKPYFIN
FT                 VNIDSYIIKCEVDTGSRITAISEDFYKQMFANKTIQSDNLMLRCYSGTPID
FT                 SLGYILVNVRLGNVTANNLRCYVIKNGGRPLLGRDWLKSLDVKQINLNDII
FT                 TDPCINKLAIEFPEVFTDKLGKCKKLLQLQLTDNEPIYVRARPVPLALRAR
FT                 VERELERLEAEGTIYRVEHSDYGTPIVPVIKTNGDIRICGDYKVTINRKLK
FT                 REFYPLPRIEELFATLSGGREFSKIDLTHAYQQTMLTDDSQPCTAITTHIG
FT                 TFVYRRTPFGLSCVPEKFQKLMEETLRGVPCTVVFLDDICVTGASRAEHLT
FT                 NLRLVLARLRDMGLTVKLSKCCFLEPSVKYLGFIIDQGGLRPDPKKVEAIV
FT                 NAPTPSDVTQLRSFLGLLNYYGKFIPKLSILLHPLHELLKKGVSWNWSNEC
FT                 NNAFIEAKRVLSGEKVLAHYEEGRPLVLSVDSSAYGLGAVLAHRFPDGSER
FT                 PVSCVSRTLNNAERNYSQIDKEALAIFYGVTRHHQYLYGRHFELRTDHQPL
FT                 SYIFGAKVGIPQTAASRLQRWAARLAAYDFTIKYISSKQNGPADALSRLPL
FT                 ALERRDTESMSYVNLVQQCMPVNFHDVNKETNKDVLLSRIMGYVKFGWPSV
FT                 SSCEEEKPYFARKKDITLDFGCLIYKYRIIIPKTLQFKILEEIHQGHLGVN
FT                 KMKNLSRNYVYWPKLDDDLERLCRSCEPCRMVRDAAPRADLHPWEYPLFPW
FT                 QRLHADFAEYLGRKYLIIIDAHSKWIEALPMDRTDAQSTITALMTVFSRFG
FT                 LPSQLVTDNGPPFLSHEFKNYCMNNCISHVTSAPYRPQGNGAAENAVKTVK
FT                 KAIKRAVHSGENVLQALNTFLFHYRNCDHATTGVPPAVLLTGRRMRMRLDA
FT                 LRPDVKKVVQAAQQRQIAHAGGTPQPTIPVGETVLARDYTSSPSKWSTGIV
FT                 SKTSGPVSYRIDMGNGVEWRRHRDQLVPVGNKSRLSLSRASIVTHKGENEV
FT                 NDHNGDDTFEDASDASNELGTEAGGGQPMSAARSRLNSPPPPPPPPGASAR
FT                 TIRAHVRAVNKDKM"
XX
SQ   Sequence 3896 BP; 1119 A; 755 C; 946 G; 1074 T; 2 other;
     tttggcgacg agkattacga acctatttag tttccattac gcgtgtgatt ttgctcaaga        60
     tgccaatcgg gaagttggaa ccatttaatc taagttctaa acaatggcct gcatacatac       120
     gtcgggtgaa tcagtatatt ttgctaaatg atgtcaaaga taacctcaaa gtgcccatgc       180
     tcattacggt cgtgggtgaa cccacatatt ccctgatgtg tgacctatgt tcccctggct       240
     tcccggagga taaaagttac gatgaattgg tgaagttggt tgccgatcac ttggaaccgc       300
     agcggtcaga gatcgcagaa cgccacgtgt ttaggctgcg gcggcaacgt gacggagaat       360
     ccatgatgga gtatctacaa gatttaaaac atttagcwac aacatgtaac ttcggtataa       420
     tgctggaaga aaacccccgc cgttatatta attacaactg tgatgaatgt aaccaacgcg       480
     gacatttaaa ggtgatgtgc aaaacagtgc gtgtgcgtgg tagtggtcgg tccagtaggc       540
     aaaacttcgt aagtgacgat gacacggaag acgaggattt gtttagcatc gaactggcgt       600
     ctaaaggtaa caaaccttat tttattaatg tgaacattga cagttatata attaaatgtg       660
     aagtggatac gggaagtcgt attacggcta tcagtgaaga tttttacaaa cagatgtttg       720
     caaataaaac aatccaatcg gataatctta tgttacgttg ttactcgggt acgccgattg       780
     actcactggg gtatatttta gttaacgtta gacttggtaa tgttacagca aacaatttgc       840
     gttgttatgt aattaagaac ggtgggcgac cactgttggg cagagattgg ttaaagtcac       900
     ttgatgtcaa acaaattaat ttaaacgaca ttattacgga tccatgtatt aataagttag       960
     ctatagaatt tcccgaggtc tttactgata aattaggtaa atgtaaaaag ttactccagt      1020
     tgcaactgac cgataatgag ccgatttacg tacgagcccg gcccgtaccg ttagcacttc      1080
     gcgcgcgggt tgagcgtgaa ctcgagcgac tcgaagccga gggtactatc tatcgggttg      1140
     aacactctga ctacgggaca cccatagtgc cagttattaa gacgaatggc gacatacgaa      1200
     tttgtggtga ttataaggtc accataaatc gtaagctaaa acgtgaattt tatcccctcc      1260
     cgcgcatcga agagttgttt gctaccctaa gtgggggaag ggagttttcc aaaattgact      1320
     taacgcatgc atatcaacag acaatgctga ccgacgattc acagccatgt acagcgataa      1380
     ctacacatat cggtaccttt gtgtatcgcc gtacaccatt tgggctatct tgtgtaccgg      1440
     aaaaattcca aaagttaatg gaagagacac tgcgtggggt accttgcacg gtagttttcc      1500
     ttgacgatat ttgtgtgacg ggggcatcta gagcagagca tttaactaat ttaagactag      1560
     ttctggctag gttgcgagat atggggttga ctgtaaaact tagcaaatgt tgctttttag      1620
     aaccgagcgt taaatatctc gggttcatta ttgatcaggg tggtctccgt ccggacccaa      1680
     agaaggtgga ggctatcgtt aatgcaccta cacctagtga tgtcacacaa ctacgaagct      1740
     ttttaggttt gctaaattat tatggcaagt tcattcccaa gttaagtatt ttattacatc      1800
     cactgcatga acttttaaaa aaaggtgtca gttggaattg gagtaatgag tgtaataatg      1860
     cttttattga agctaagcga gttctgtcgg gtgagaaagt acttgcacat tatgaagaag      1920
     gtcggccttt agtgctatcg gtagacagca gtgcgtatgg cttgggcgca gtgttggcgc      1980
     atcggttccc agacggcagt gagcggccgg tcagctgtgt gtcacgcaca cttaataacg      2040
     cggagcgcaa ttatagtcaa attgacaagg aggcgctggc aatattttat ggcgttaccc      2100
     gccaccatca gtacctttat ggtagacact ttgagttacg tacggatcat caaccattga      2160
     gttacatttt cggagctaaa gtgggtatac cccaaacagc ggccagccgc ttgcaacgct      2220
     gggcagcgcg attagccgca tacgatttca ctattaaata tattagttcg aaacaaaacg      2280
     gcccggctga cgcgttgtca cgtttaccgc tagcactgga gcgccgcgac accgagtcaa      2340
     tgagctatgt taatttagtg caacaatgta tgccggtgaa tttccatgat gtaaacaaag      2400
     aaacaaataa agatgtatta ttgtctcgaa taatgggtta tgtaaaattt ggatggccat      2460
     ccgtatctag ttgcgaagaa gaaaagccat attttgcgcg aaagaaagat ataactttag      2520
     attttggctg tttaatttat aaatatcgaa ttattattcc caaaacatta cagtttaaaa      2580
     ttttagagga aattcatcaa ggtcatttgg gtgttaataa aatgaaaaac ttatcgcgca      2640
     attatgttta ctggccaaag ttagatgatg accttgaaag gttgtgtcgt tcgtgcgagc      2700
     catgtcgaat ggtgcgcgat gcagcgccgc gtgccgacct gcatccgtgg gaatatcctt      2760
     tgtttccttg gcaacgttta cacgctgatt ttgcggaata tttgggacga aaatacttga      2820
     ttataatcga tgcgcattct aagtggattg aggcacttcc tatggatcgc acggacgcgc      2880
     agtcaacaat cacagcgtta atgaccgttt ttagcaggtt tgggttgcca tcgcaactcg      2940
     ttacggataa tggaccacca tttctttctc acgaatttaa aaattattgt atgaacaatt      3000
     gtatttcaca tgtgacgtcg gcgccataca gaccacaggg taatggtgcc gccgaaaatg      3060
     cagtaaagac tgtaaagaaa gctattaaaa gggcagttca tagtggcgaa aatgtgttgc      3120
     aagcattaaa tacattttta tttcattacc gcaattgtga tcatgcaact acgggagtgc      3180
     caccggcagt attgctaact ggacgtcgga tgcgcatgcg actagatgcg ttacggccag      3240
     atgttaaaaa agtagtacag gctgcgcagc aacgccagat agctcatgcg ggaggcacgc      3300
     ctcagcccac aattccagtt ggagaaacgg tgctcgcacg tgactatacc tcgagtccga      3360
     gtaaatggtc tacgggaata gtatctaaaa cttccggacc ggtgtcttac cgcatcgaca      3420
     tgggaaacgg tgtcgagtgg cgcagacatc gggatcaatt agttccagtt gggaataagt      3480
     cgagactttc actgtcgcga gcgagcatcg ttactcataa gggggagaat gaggtgaatg      3540
     atcataatgg agatgatact tttgaggatg catcagatgc atcaaatgag ttggggacgg      3600
     aggcgggtgg cgggcagcct atgagtgccg ccagatctag acttaactcc ccgcccccgc      3660
     cgccgccgcc accgggggct tcggcaagaa caatacgtgc gcacgtgcgc gccgttaata      3720
     aagataaaat gtaaacatgt ttattttttt agtatggtta agaagtgtta agtttgtgta      3780
     gcattattaa acacatattg tggtaggcag taataacgac tttaagatta ttattgtatc      3840
     ttcgcgtact tatgtattta agtttaacta ttcctttaga ttttaagggg gaaaag          3896
//
ID   Gypsy-23_SpFr-LTR repbase;    DNA;    INV; 102 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-102
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1876-1876 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 102 BP; 25 A; 16 C; 19 G; 41 T; 1 other;
     tgtaaggtat ttcttaatat ktttattatt gtataatgtg ggtaagcgct ttattttaat        60
     aaaccagtca gtttcccagc ccggtgtttg attgacgtcc ca                          102
//
ID   Gypsy-23_TrNi-I repbase;    DNA;    INV; 5841 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5841
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 226-226 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           946..2118
FT                 /product="Gypsy-23_TrNi-I_1p"
FT                 /translation="MTIIEELFEKLTKIRTNLVKLGRQRRTAEALAKKLKE
FT                 ANENYSLYVDEINNISEQANSGIIKDSELVLINALSERYMKLYNDIKTLCK
FT                 EGPLKMETFNLKTALNLLPVMNNNDVVTEKLIDNIEYYGSLLTTPECKLSL
FT                 IKFVLKSRLSKSAKLKLDEQYSSIEALLNDMRCKLLAQKAATAIQSKLQTL
FT                 RQNDVTISEYGQQLSELFVDLTISQSNGDSNSYKVLKPLNEKLAIKRFADG
FT                 LRNRRLSTIIAARNFESLKDAVQVAIDEENSTSSSEVIGTYKRNNMYRGHN
FT                 NYSRGTRPSRTYYRGNNRGTYQRNKVNYIQYNPPRYYQNYQRGRSSGRSYR
FT                 GHGANPPRYSRGCSGHNQYKNNERKVHMLYEKGDENANDTGNNDFFRD"
FT   CDS           1901..5770
FT                 /product="Gypsy-23_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ITFNITHHGIIKIIREVGLPDDLTEDMVQIHHVTREG
FT                 VQVIISTKITNEKFTCCTKKETKMQMTQEITIFFVTNDYILAGGNSISIEI
FT                 STGNGLGVSTWLIDTGATISAVKHEYIKQQNIKVNYVNLHINGIGGSVQAI
FT                 GYTYLGLQLGNKIITHKFHVFKSLPCVSTGILGHDFLNKYNSIINYKTNTI
FT                 TFTTGINELITLNCKNYSCYTLAPRSESIIYIKTRKTEDCVICAKEISEGV
FT                 FVASTIAKPIDGKIPIQILNTTEKEIQLHDIKPTIHNLEEYNYCYFNDTNK
FT                 NADRVKILFKQLKLDHLNKEEKIEIEKICAKYADIFQLPDDQLTVTNLCKQ
FT                 SIQLKPNASPVFVKNYRLPQMHKKEIDTQINKMLKDGIIEPTQSEWSSPVL
FT                 LVPKKSHATGEKKWRLVIDYRKLNERIQDDKFPLPNITEILDSLSGSIYFS
FT                 HLDLFSGYYQQELDSDSKKYTAFCSGQYQMTRLPMGLKISPSAFSRMITLA
FT                 MSGLTYDKCFVYLDDIVVFGRNLDSHVNNLISVFERLRKVNLKLNPIKCEF
FT                 LKKQVLYLGHVVSADGILPDPEKIKSIIEYPIPTNEKEVKSFVALANYYRK
FT                 FIPAFAEKAYHLNQLSKKNVKFTWDNNHQKAFEILKKAMCNPPVLQYPNFD
FT                 QSNEFVLSTDASGYALGAVLSNNDGRPVAYASRNLNKAERNYATIEKELLA
FT                 IVWATKYFRPYLFGRHFTIKTDHKPLVYLFNMKDPSSRLIKFRLALEEFDF
FT                 TVDYVKGKENTVADTLSRIQITSKNLKEMSECLCVMTRAMKKKLNIDENGS
FT                 KSKECLPSVHSNDRTDQPKVVDMNFKPKQCVELRFMKELELIKLRKEINMK
FT                 VKESKTFIYVEENKTLYIKPYSSSQMMRATFVKELGIVSNKWEISEIIIIK
FT                 NENNNIFVEKLANEIKNNENWTGPRLCVLKDVIRINNNDEKKVILNDFHIL
FT                 PSSGHAGIRRMYNNIKNYYFWVGLEDDIKKYVKKCIKCQKEKYSRNIKEPM
FT                 NITTTADTAFQKIFLDIVGPLDRDEDNFSYILTLQCELTKYVEAYPLVTKS
FT                 SIEVAEKLVSNFILRYGIPETIATDRGTEFVSDVFQKVCELLKINKLTSTA
FT                 YHHQSIGSLENCHKNLSAYLRIQTDNSPEHWSKWLPFWCFAYNTSVHTKTK
FT                 FTPFELVFGKKCTLPSNLTTHIDPIYNFESYPLELRYRLQASQKSARENLM
FT                 NTKNLRKNIYDKNINQIQYKPNDDILIKNENRNKFTSVFSGPYKVVRDLSP
FT                 NVEILKNGKLELIHKNRTKLCTNVKNIYV"
XX
SQ   Sequence 5841 BP; 2315 A; 851 C; 1028 G; 1646 T; 1 other;
     tggcgaccct gccagtgcgc tcgagtcggg tttggtgtta ttagaaatgt gagtgcgttc        60
     cgtatatggt ggcgaaacga tcggtgtccg ttcattatgg agtaaaataa acctattaat       120
     ttacgcaatg gggaacactc agaaaccacc gtccgcggca gaagtcagtc acaacgatat       180
     ttatactcaa attgggaaaa ctaatttaat agaacaaaat aatatactga cccaaggaat       240
     agccaatttg aatttgtaca tctgcatatt tgtgattact ggacttgtaa ttacatctct       300
     tgctctcttg cgttacctta atacgtgtgt caacaagaga atagcaaaaa gagcacaagg       360
     cgagattcta cgtcaaaaag ttataccagt ttaaagatgg agtactactt agaaacgatt       420
     cgaaccacat taaaaatttt ttgcgacgca aacgaaatag taaacgaagg tgtcaacata       480
     acgagggaag aaggacgaat agctatcaca gcacatattg aaggatacaa gggacacagt       540
     actttgagcc cagaaaaaat aacggcaaga cagttcgcgt tgacagccaa tcaactcgat       600
     gtagagttcc aggakgggac tcggggtatt gcgaagatag atttggtgta tgaagggact       660
     gttatatgga tttggaaaat agtatgggaa cgtgacgcaa agtatttaga ctggtgaata       720
     agctaagaca aaagtgtaaa agtgtgacga gtgaagtggt aactgctcta tttcaacggg       780
     actatgtgag taatatacat ctatctacat ataatactcg tagcaataat tagttgatat       840
     tataatcaat gcgtatttaa tcatttagtg tattttaatt aaggatataa tggaatatta       900
     agcatacaat tatatatata aaaaaaaaaa aaaaaatgat acgtaatgac cattattgaa       960
     gaattatttg aaaaattaac taaaatacgt actaatttag taaaattagg acgacaaaga      1020
     cgtacagctg aagccttagc taagaagcta aaagaagcta acgaaaatta ttctttatat      1080
     gtagacgaga taaacaatat aagtgaacaa gctaatagtg gtatcataaa ggatagtgaa      1140
     ttagtattaa ttaacgcgtt gagcgaaaga tatatgaaat tgtataacga cattaagaca      1200
     ttgtgcaaag agggaccatt aaaaatggaa acatttaatt taaagactgc tttaaattta      1260
     ttaccagtaa tgaacaataa tgacgtagtt actgaaaaat taattgataa tatcgaatat      1320
     tatggttcac tactaaccac accagaatgt aaactaagtt tgattaaatt tgtattgaaa      1380
     agtagacttt caaaatcagc taagttaaaa ttagacgagc agtactcatc tattgaggca      1440
     ttgttgaacg atatgagatg taagttgctt gctcaaaagg cagccaccgc gattcaatca      1500
     aaattacaga cactgcgaca aaatgacgta acaatttcag aatatggaca acaactatca      1560
     gaactattcg ttgacttaac aatctctcag tctaatggcg actcaaatag ctataaagtg      1620
     cttaagccgc ttaatgagaa attggctatt aaaaggtttg ccgatggatt acgtaaccgt      1680
     aggttaagca ccatcattgc agccaggaat ttcgagtcac tcaaagatgc cgtacaagtt      1740
     gcaatcgacg aagaaaactc tacttcatca tcagaagtaa ttggtacgta taaacgaaac      1800
     aatatgtata gaggtcataa caactactcg agaggcactc gaccatcaag aacgtactat      1860
     aggggcaaca acagaggtac gtatcaaaga aataaagtaa attacattca atataaccca      1920
     ccacggtatt atcaaaatta tcagagaggt aggtcttccg gacgatctta ccgaggacat      1980
     ggtgcaaatc caccacgtta ctcgagaggg tgttcaggtc ataatcagta caaaaataac      2040
     gaacgaaaag ttcacatgtt gtacgaaaaa ggagacgaaa atgcaaatga cacaggaaat      2100
     aacgattttt ttcgtgacta atgactatat attggcaggc ggtaattcaa tttccattga      2160
     aataagcacc ggaaacgggt taggcgtaag cacatggtta atagacacag gtgctacaat      2220
     atcagctgtc aaacatgaat atatcaaaca acaaaatatt aaagttaatt atgtaaatct      2280
     acacattaat ggtataggcg gcagtgtgca agccatagga tatacatatt taggtttaca      2340
     actaggaaat aaaataataa cgcataaatt tcatgttttc aaatctttgc catgtgtttc      2400
     cacaggaatt ttaggtcatg atttcttaaa taaatataat tctataatta attataaaac      2460
     aaatacaata acatttacca caggtataaa tgagttgata actttaaatt gcaaaaacta      2520
     ctcatgttat acgttagcac ctcggtcaga gtcaattata tatatcaaaa cacgtaaaac      2580
     agaagattgt gttatttgtg caaaagaaat aagtgaagga gttttcgttg ctagtactat      2640
     tgctaaacca attgacggaa agataccaat tcaaatttta aatactaccg aaaaagaaat      2700
     acaattgcat gatattaaac ctacgataca taatctggag gagtacaact attgttattt      2760
     taatgatact aacaaaaatg cagatagagt aaaaatcctt ttcaaacagt taaaattaga      2820
     tcatttaaat aaagaagaaa aaatagagat agaaaaaatt tgtgcaaagt acgctgatat      2880
     ttttcaatta ccagatgatc aattaacagt tactaattta tgtaaacaat cgatccaact      2940
     aaagccaaat gctagtccgg tatttgttaa aaattatagg ttaccacaaa tgcataaaaa      3000
     agaaatagat acacaaatta acaaaatgtt aaaagatgga ataattgagc caacgcaaag      3060
     cgaatggtca agcccggttt tattggtacc gaaaaaatca cacgctacag gagaaaagaa      3120
     atggcgactt gtaatagatt ataggaaact aaatgagaga atacaggatg ataaatttcc      3180
     tcttccaaac ataacagaaa tattagactc attgtcagga tcaatttatt ttagccatct      3240
     tgatcttttt tcaggttatt accaacaaga attagattca gattcaaaga aatatacagc      3300
     attttgttcg ggacaatacc aaatgacccg gttacctatg ggacttaaaa taagcccaag      3360
     tgcatttagc agaatgataa ctttagcaat gtctggatta acgtatgata aatgctttgt      3420
     ttatttagac gatatagtag ttttcggaag aaatttagat agtcacgtaa ataatttaat      3480
     tagtgttttc gaaagattac gaaaggttaa tctaaagcta aatccaatta aatgcgaatt      3540
     tttaaagaag caagttttat acttagggca tgtagtatct gctgatggta ttctacctga      3600
     cccggaaaag ataaaaagca ttatagaata tcctattcca actaatgaga aggaagtaaa      3660
     aagttttgta gcgttagcca attattacag gaaatttatt ccagcttttg cagaaaaagc      3720
     atatcacctc aaccaattaa gtaagaagaa tgtaaaattt acctgggata ataatcacca      3780
     aaaagcattt gaaatactaa aaaaggcaat gtgtaatcca ccagtactgc aatatccaaa      3840
     ttttgaccaa tccaatgaat tcgtcttgag tactgatgcg tcaggctatg ctttaggtgc      3900
     agttttatct aataatgatg gacggccagt agcttacgca agtagaaatt tgaataaagc      3960
     agaacgaaac tatgcaacaa tcgaaaaaga acttcttgcc attgtgtggg caaccaaata      4020
     tttcagacca tatttatttg gcagacattt tacgattaaa accgatcata agccgttagt      4080
     atatctcttt aatatgaaag atccgtcaag tcgattaata aagttcagac ttgcattaga      4140
     ggaatttgat tttacggtag attatgttaa aggtaaagaa aatactgtag cagacacatt      4200
     atctagaatt caaataacat caaaaaattt aaaggaaatg agtgaatgtt tatgtgttat      4260
     gactagagca atgaagaaaa aacttaacat agacgaaaac gggagtaaat caaaagaatg      4320
     tttaccctca gtgcatagca acgatcggac tgatcaaccg aaagttgtag atatgaattt      4380
     taaaccgaag caatgcgtcg aactacgttt tatgaaagaa ttagagttaa taaagttacg      4440
     aaaagagata aatatgaaag taaaagagtc gaaaacgttt atttatgtag aagaaaataa      4500
     aacattatat ataaaaccat attcctcatc gcaaatgatg cgagccacct ttgtgaagga      4560
     acttggtata gtaagcaata aatgggaaat aagtgaaata attataatta aaaatgagaa      4620
     taataatata tttgtagaga agctagctaa tgaaataaag aataatgaaa attggaccgg      4680
     tccgcgtcta tgtgtattaa aagacgtaat aagaattaat aataatgatg aaaaaaaagt      4740
     tatactaaat gattttcata tattgccttc gagtggccac gcaggcatta ggagaatgta      4800
     taataatata aaaaactatt atttttgggt aggattagaa gatgatatta agaaatatgt      4860
     taaaaagtgt attaaatgtc aaaaagaaaa atattctcgg aatataaaag aacccatgaa      4920
     tataacaact actgcggata cagcatttca gaaaatattt ctagacattg tgggtccttt      4980
     agatagagat gaagacaatt tctcatacat tttgactcta caatgtgaat taactaaata      5040
     cgttgaagcc tatcccttag taactaagag ctccattgaa gttgcagaaa aactggtaag      5100
     taattttata cttcgatacg ggattcctga gactatagcc acagacagag gtacagaatt      5160
     tgtatccgac gtatttcaaa aggtttgtga actattaaaa ataaataaac ttacatcaac      5220
     agcatatcat catcaaagta taggttctct agaaaactgt cataagaatc ttagtgctta      5280
     tcttcgtatt caaactgaca atagtccaga gcattggagt aaatggttac cattttggtg      5340
     ttttgcatat aacacttcag ttcatacaaa gacaaagttc actccatttg aattagtttt      5400
     cggcaagaaa tgcactttac ctagcaactt gacaactcat atcgacccaa tttataattt      5460
     cgaaagttat ccattagaat taagatatag gcttcaggca tctcaaaaat cagcaagaga      5520
     aaaccttatg aatacaaaaa atttaaggaa aaatatatat gataagaaca ttaatcaaat      5580
     acagtataag ccaaatgatg atatattaat aaaaaatgaa aatagaaata aattcaccag      5640
     tgtattttcg ggtccataca aagttgttag agatttaagt ccgaatgtgg aaatactaaa      5700
     aaatggtaaa ttagaattga ttcataagaa tcgcactaaa ttatgtacta atgtaaaaaa      5760
     tatatatgta taattaaaaa aaaaaaaaaa aaatataacc ttatataatg attatatttt      5820
     tttttccatc agggatgaat a                                                5841
//
ID   Gypsy-23_TrNi-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-317
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 180-180 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 317 BP; 107 A; 54 C; 48 G; 108 T; 0 other;
     tgtggtatgt atccaagtta ggttaggtac ttaaaatatt aataataata ttatagtgat        60
     tcatggccgt gtgactaatg ttactcgaga cgagacacgt gcctgaagat ctagattcca       120
     ataagttcat tcacttgtaa tacgaataat attcaattag taactagaga cattgtaaca       180
     ctagatttag gttaaccata tatggtatgc tagttaccta gattatttta tataaatatt       240
     acccacatac cttaaataaa tgagttcaat cctaacttta gtagtttcaa ttcgtctccg       300
     tccctaccaa catcgca                                                      317
//
ID   Gypsy-23_TrVa-I repbase;    DNA;    INV; 5238 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5238
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 268-268 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1420
FT                 /product="Gypsy-23_TrVa-I_1p"
FT                 /translation="MSDEFRQFITNTLKAGKDRRVKEAPARLVRLQELWTA
FT                 VPEEERTEDLEALSKRGFQFLVDIITEDTKDQSGSEMTTSLSDFDLRTAGQ
FT                 VVTEFNGTSTELNDFLDCSRWYHDSIKLADRPKFLEYLLKVKLKGKAKTAL
FT                 VEAPKSFEALEKLLKERFKPRATIGSLQNSLSALQQRAKDVSTFAADIEEL
FT                 VQRMTDLQVAEKGEDNREIIRSLNDTLALNVLKMGSNAHVKKVLLAGQVKT
FT                 FTQGVSLALEAESSLPTEGQQAQVNFVRRGGYTGRGRGRKQNNRGSKTSDG
FT                 STRQRGGRNFHRGHHQSRSRSGNDKGPSAKAKQEAQVSVAAVEEQSATIYS
FT                 "
FT   CDS           1264..5061
FT                 /product="Gypsy-23_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="WFDAATWWSEFSSRSSPKQISIGKRQRAVSEGKAGSA
FT                 GVGGGRRGAKCYNLQLNCKSNFLKIYTNLSQKPLTFLVDTGSDISLCKINV
FT                 VERAQKYFNNKVINLSGIGDGMRSTLGEIDAKLKFNSSVGLTHNLFLVDEE
FT                 FPVKTDGIIGRDFLDKYNCNLDYGSWIISFIYNQHKVEVPMFKFISVAENE
FT                 GVTLPAHTEVIQAVNLVLAEDSVIHSGEIAPGVFLADSIVPASGVKHVKIL
FT                 NKTDQQISLQNFPLRYEPLSNFCEAQHFTDTVSAEREQRVDALVKSNMSAV
FT                 PKNDAESIAALCTEFHDIFHLPNDKLTVNNFYKQRVILDDKNPVYKKNYRL
FT                 PESQKPEIRRHVEKLIKDDVIEPSVSPYNSPILLVPKKGDNGEKTTRLVID
FT                 FRSLNERVCADKFPLPRIDSILDQLGRARVFSTLDISSAFYQISLEKASRP
FT                 CTAFSVSEFGHFQFKRLPFGIKIAPNSFSRMMSIALSGLEDICFWYIDDLI
FT                 IHACSVRHHLKNLRRVFERLRQYNLKLNPGKCNFLKKELFYLGHRITDKGV
FT                 FPDNRKFHVIENYPVPKNAKEVQRFVAFANYYRKFIPLFAEKAYPLNQLLR
FT                 KKVQFEWTDERQRAFDDLRKCLMTPPVLKYPDYSQPFILSTDSSNYALGAV
FT                 LSQGEIGSERPVAYASRSLNRHELKKPIIEKELLAIHWAIKYFRPILFGRK
FT                 FIVITDHRPLVSLFTQRDPSSKMTRVRLDLEEYDFEVRFKPGKANVNADAL
FT                 SRIVIDSDQLKALIPREVDVAVVTRSQTKNSYRDNNSNNASRKVSCDNAEP
FT                 DQLKAWNATSLTDVRYLKTLRFNVVNNKDSCRETDEFKIDLEGSDYILTLR
FT                 VSGDAMPSLGPALEALSRQFENLKLRLSTEDRLFDYLSLSEFKDKVNQLQI
FT                 DLQIIIYTPARTVSDATEQNEIVKKFHNEIVGHFGINKTLAKIRQHYEWPK
FT                 MVKTISNFIKLCKKCQLNKVSRHNKEYFVKTDTPSTSFEVIEIDTVGPLPL
FT                 TEAGSRYVVTSQCALTKFIDCVPVSDKSAQTVARAIVEQFFCRYGIAATIR
FT                 TDLGTEYMNDVMREICNYLNITHKSSTPAHHETIGALERSHRVFNEFLRAH
FT                 IDAQHSTWDKWLSFYTFSYNSTPHVSTKYTPYELVFGKLPNIPNLFSSPTF
FT                 SYSDHENFAKDLKFRLQNSHKTVQASLNKLKEHQNETHNKNLKPHLFTEGS
FT                 FVKLRVENRHKLDPVYSGPHEVLKTDGVNTIIRFKNKTLTVHNNRLLPFRS
FT                 PIANF"
XX
SQ   Sequence 5238 BP; 1541 A; 1027 C; 1148 G; 1522 T; 0 other;
     tggcgaccgt gacactcgga cctctcactg attcctgatc gacttcctcg gcagtttttc        60
     gtcacccacc tcacctctct accgtcttcg ttcttacctc accggcactt atgggcaact       120
     ggttcagcag caacaaggag tcatccaaag aaagcagccg ggagaccgtc gtcgtttctg       180
     gacaggccaa cgtgaatttg gacacgcacg accaagtgca gtactctctg ttggctttga       240
     tgggctttct cgttttggtt atccttgggg cactcctggc gtgtagatgg gcgcatttca       300
     ggaagaagca gaatcagcgg tttgaggcgt tagaggtgga gttgcgagag ctgaagggtg       360
     tcgttggtca gcgttagtga gtcggttgcc gatgtccgac gagttccgtc aattcatcac       420
     caatactttg aaagctggaa aggatcgtcg tgtaaaggag gctcctgctc gtctcgtgag       480
     gctacaggaa ctgtggacag cagttcccga ggaggagcgc acggaagatc tcgaggcact       540
     ttccaagagg ggttttcaat ttctggttga catcatcact gaggacacaa aggaccaatc       600
     cggctcagag atgacgacat ccctgtcaga ttttgacctg cggacggcgg gtcaagttgt       660
     gacagaattc aacgggacat ccacggaact caacgatttt ctggactgta gcaggtggta       720
     ccacgactcc atcaaactgg cggacaggcc caagttcttg gaatacttgc tcaaggtgaa       780
     gctcaagggc aaggcaaaga cggcgttggt cgaggctccg aaatcattcg aggccttaga       840
     gaagctcctg aaggaacgtt tcaagccgag ggcaactatc ggcagtctgc aaaactccct       900
     ttcagcgttg cagcagcggg ccaaggacgt gtcaactttt gcggctgaca ttgaggagct       960
     ggtgcagcgc atgacggatc ttcaagtggc ggaaaagggc gaagacaatc gtgagatcat      1020
     tcgctcactc aacgatacgt tggctttaaa cgtattgaag atgggctcga acgcacacgt      1080
     aaagaaggtg ctgttagcgg gccaggttaa aactttcacc cagggtgtta gtttagcgtt      1140
     ggaggcagaa tccagtctac ccacggaagg tcaacaggct caagtgaact ttgtgcggcg      1200
     tggcggctac actggacgag gtcgcggccg aaagcagaac aacaggggat caaaaacttc      1260
     tgatggttcg acgcggcaac gtggtggtcg gaattttcat cgcggtcatc accaaagcag      1320
     atctcgatcg ggaaacgaca aagggccgtc agcgaaggca aagcaggaag cgcaggtgtc      1380
     ggtggcggcc gtcgaggagc aaagtgctac aatctacagt taaactgtaa gtcaaacttt      1440
     ttgaaaatct atacaaattt gtctcaaaaa cctcttactt ttttggtcga taccggttcc      1500
     gatataagct tgtgtaaaat taatgttgtt gaacgcgcgc aaaaatattt caataataaa      1560
     gttattaatt tgtcaggcat tggagacgga atgcgtagta ctttaggtga aatagatgct      1620
     aagttgaaat ttaattctag cgtaggtctt actcataatt tatttttggt agatgaagaa      1680
     tttcccgtta aaaccgacgg cataattggc cgtgattttc ttgataaata taattgtaat      1740
     ttggactacg ggtcatggat tatatcgttt atatataatc agcataaagt tgaagttcct      1800
     atgtttaaat ttataagtgt cgcggaaaat gaaggggtta cacttcccgc gcacacagaa      1860
     gtgattcagg ctgtaaatct tgttttagct gaagatagcg tgattcattc gggcgagata      1920
     gcaccgggtg tatttttagc tgatagtatt gttccagctt ctggtgtgaa gcacgtaaaa      1980
     attttaaaca aaacggatca gcaaatttca ttgcaaaact ttccgcttcg ctatgagcct      2040
     ctgagtaatt tttgcgaggc tcagcatttt actgacacgg tgtcagcaga gcgcgagcag      2100
     cgtgtagatg ccctggttaa atcgaatatg tcagctgttc caaaaaatga tgcggaatcg      2160
     attgctgcac tctgtacaga atttcacgat atttttcatc taccaaacga taaattaact      2220
     gtaaataatt tttataaaca acgtgttatt ttagatgata agaatccggt ttataagaaa      2280
     aattaccgac ttccggagtc gcaaaagccg gaaattcgta gacatgtaga aaagctaatc      2340
     aaagatgacg ttattgagcc atcagtaagc ccgtataata gtccaatact tttagtgccg      2400
     aaaaaaggcg ataatggtga aaaaacaact cgattagtta tagattttcg ctctttgaac      2460
     gaacgtgttt gcgcggacaa atttccgctt cctagaatcg attctattct cgatcagctg      2520
     ggtcgagcga gagttttttc aactttggat atctcaagtg ctttttatca aattagctta      2580
     gaaaaggctt ctcggccttg cactgctttt tcagtatctg agtttggtca tttccagttt      2640
     aaacgattac catttggaat taaaattgca cccaactcgt tctctagaat gatgtcgata      2700
     gcgttatctg gattagaaga tatttgtttc tggtatattg acgatttaat tattcatgcg      2760
     tgctccgtaa ggcatcattt gaaaaatcta aggcgcgtat ttgaaaggtt acgtcagtat      2820
     aatttgaaat taaacccagg gaaatgtaat tttcttaaaa aagagttgtt ttatttaggc      2880
     catagaatta cagacaaagg agtttttcct gataatcgaa aatttcatgt tattgaaaac      2940
     tatccggttc cgaaaaatgc taaggaagtt cagaggttcg tagcttttgc gaactactat      3000
     cgaaaattta taccactttt tgccgaaaaa gcgtatcctt taaatcagct tttaagaaag      3060
     aaggttcaat ttgagtggac agacgaaagg cagagggcgt tcgatgattt gaggaaatgt      3120
     ttaatgactc ccccagtgtt aaagtatcct gattactctc aaccgtttat tttatctacg      3180
     gacagttcta attatgcact gggcgctgtc ttatcgcagg gcgagattgg cagcgaacgg      3240
     cctgtagcgt acgcaagtcg tagtttaaat cgacatgaac ttaaaaaacc aatcatagaa      3300
     aaagagctac ttgctattca ttgggccatt aaatatttca gaccaatttt gttcggtaga      3360
     aaatttattg tcatcaccga tcatcgacct ttagtcagcc tattcactca aagggatccc      3420
     tcttcaaaaa tgacaagagt tcgtcttgat cttgaagaat acgattttga ggtacgattt      3480
     aaaccaggaa aagcaaatgt caacgcagac gcgttatcta ggatcgtgat cgactccgat      3540
     caattaaaag cattaatacc tagggaggta gatgttgccg ttgtaacgcg ttctcagaca      3600
     aaaaatagtt accgtgacaa caattccaac aatgcatctc ggaaagtgag ttgtgacaac      3660
     gctgagcctg atcaactcaa agcgtggaat gcaacctcac tgaccgatgt gcgttatttg      3720
     aaaacgttgc gttttaacgt agtaaataac aaagacagtt gcagagagac ggatgaattt      3780
     aaaattgacc tagaaggctc cgattacatt cttactctac gagtcagtgg cgatgcaatg      3840
     ccgagcttag gaccggcatt ggaggcgctg agtcggcagt ttgagaatct gaagttgcgt      3900
     ttgtctacgg aagatagact ttttgattac cttagtttgt ccgaattcaa ggataaggtg      3960
     aatcagttac agatagattt gcaaatcatt atttacactc cggctcgcac cgtgagtgac      4020
     gcaacagagc aaaacgaaat tgtgaaaaaa tttcataatg aaatagtggg tcactttggc      4080
     atcaataaaa cgttggctaa aattagacag cattatgaat ggccaaaaat ggtcaaaaca      4140
     atctctaatt ttattaaact gtgtaaaaaa tgtcaattaa acaaagtcag tcgacataac      4200
     aaggaatatt ttgttaaaac tgatactcct tcaactagct ttgaagtaat tgagattgac      4260
     acggttggcc ctcttccttt aacagaggca gggagtcgat atgtcgtcac atctcaatgt      4320
     gctttgacta aattcattga ttgtgttcct gtatctgata aatctgccca aaccgtagct      4380
     agagcaattg ttgagcaatt tttctgtcgt tatggcattg ctgcaacaat tagaacagat      4440
     ttaggaacag aatacatgaa cgacgtcatg agggaaatat gtaattatct aaatatcact      4500
     cataagtcgt ctaccccggc tcaccacgaa acgattggtg ctttagaacg ttctcaccga      4560
     gtttttaacg agtttttgcg ggcgcatata gatgcacaac atagcacgtg ggataaatgg      4620
     ttatcatttt acacgttttc ttacaattct actcctcacg tgtcaactaa atatacacca      4680
     tatgagttgg tattcgggaa attacccaac attccaaatt tgttttcatc tccaactttt      4740
     tcttattcag accacgaaaa ttttgcaaaa gatttaaaat tccgtttaca aaattcccac      4800
     aaaacagtac aggcttcttt aaataagctt aaagaacatc aaaatgaaac tcacaataaa      4860
     aacctaaaac ctcatttgtt tacagagggt tctttcgtaa aacttagagt tgaaaatcgc      4920
     cacaaattag accctgtcta ctcaggacca cacgaggtcc tcaaaacaga tggtgtaaat      4980
     actattattc gttttaagaa caaaacatta actgtacata ataatcgtct tctcccattc      5040
     cgttctccaa tcgccaattt ttagtgtcat tataatcgta aattgttttt tttttttttt      5100
     tttttcttct ctcctcactt cttgtttgat ttttcttatg tttattcttt gattcattct      5160
     tttgttttgt attttaccat tttgttttta tgtaaaaaaa ggttcgctct actgcacctt      5220
     tttcttaaac ggtggggg                                                    5238
//
ID   Gypsy-23_TrVa-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-23_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-231
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 327-327 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 231 BP; 67 A; 50 C; 42 G; 72 T; 0 other;
     tgtagtggaa tgcgtcaagc tgtgccttga tattgcgcaa cttgtctgtt tatcttcaaa        60
     catctctttc caagcatcgc acgcgaatgc agcgattctg aagataaaca cacatcttga       120
     gtaatatcaa ggtgtggcca tttatgaatg tatataagac attgttctca ataaactagg       180
     cagttactct attcgaactc ggtctcatca ttttcaagca gtaactccac a                231
//
ID   Gypsy-24-I_NVi repbase;    DNA;    INV; 10116 BP.
XX
AC   .
XX
DT   22-APR-2009 (Rel. 14.04, Created)
DT   22-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-24-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10116
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 785-785 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2960..7543,7553..9604)
FT                 /product="Gypsy-24-I_NVi_2p"
FT                 /translation="HKKLYRSKIIGNACEQILQSLQKYKPYDRRMFPITKP
FT                 AERRVGKRIKPSRTEWPRSYNTNPLSNTENTVKTNVITASQNQNRANYEDH
FT                 DQQEVQLLEEKEIKLEIYHLKLNDLLEYVEIINPYSKNLCNLLVDSGAQIN
FT                 IIKQNQIPIGTQLLDKKILLSGIANNSIKTLGIVELPINGKYFDFHVAPND
FT                 FVIPYDGILGIKLLRGSKLRLDEGYLEVNNVKLKLQRGPITKTGMKLSQKE
FT                 TLNIILKEIIRDNDAYNIEQQNILKETDHENNIDKIRMQDEANQEICEESR
FT                 TSKISNIEDELKQTEQSHEKQNTEINEAEPLLENDSVTENTFNNDVFAILN
FT                 TISKIHEINDKSELQSLQQKKINENKPRNLENFLKNDDKNIENFILDVNTV
FT                 LQEQVTPEEAPTQTKRLNYKEILTIMKENNVKLSKADKKIIFEEKKYQYVS
FT                 IDIDYIPEGAQVVEELNIDEKLILNIETEILNKNQENKTRKPSRKEILRKK
FT                 LQLKNGGKRNDERIERMINQYPDVFWIEGDKLGTCNVEQHEINLTSDKPVY
FT                 VKQYPLAHKSKGIALKEMGKLQETKAIRETKSAFNAPALVVPKKELIPGEK
FT                 RYRLVIDYRALNEVTIADPYLLPNINEILDLIGKRKYFDVLDLKSGFHQVK
FT                 MRPSDIHKTAFSLHPLGRFEFVVLPFGLKNSARTFQRVINKVLAKYIDKIC
FT                 FNYIDDIIIFGDTIEELEERFGLIAQALIEAGLKLEPEKCEFSKTEVCFLG
FT                 HVISEAGIKPDENKIQAVKKFPIPNNVKKVRQFLGFVNYYRRFIKNLAEIT
FT                 KPLTILLQKDRPFAWGLEQQTAFDKLIESLCSAPVLQYPQFDKPFIITTDA
FT                 SQYALGCVISQGEIGKDRPIAYASRVLQPAELKYATYEKEALGIMYAIKTF
FT                 KNYIYGNKFIIVTDHRPLLWLKSADNNERVQRWRLKLADYDYEIVYKAGKQ
FT                 NTNADALSRNPVAKMDICVVTRAQKRREENQTSQDLTNDEKIKIINEQRSK
FT                 LHNKKLQIKKRKRAKVQKSRKKSVPEEEKPHDKQKNIVYSKNTIQFRNDNI
FT                 IHIVNNKGESLEDNIGELLKKENIHWNKNLSDNEIEILNKGKNKIFVLCLN
FT                 TAESVVTVKTNIIKLFQLLKTIFLQKNYLIFSISKDLIINNISWEEIEEIL
FT                 KTIFEGTNIKVVICLNNIVYVEEKQRDKIFEMLHSTKIGGHSGINRTYNRI
FT                 KDKYYWENLKVDIQNRVNACEDCQRNKLKRIKIKQPMVITDTPLKTFDKIC
FT                 MDVVGPFNVTKNNNKYILSIQDQLTKFIIIASMSDQTAESVADALVKKFIC
FT                 IFGSPKLVLTDRGANFTSKLLKQVARRFKFTKIETTAFSPQSNGSLERAHH
FT                 PLCEYIKNFTSKKIEWDELLEFAQFHYNTSVHTSHKFTPHELVFGYPARLP
FT                 SSETLKKSEQLPTFNGYLENLVLKMQEMAKLARENLIDSKLKSKAYYDRFI
FT                 NPIDLKIGEKVWLIKEPKPGKLEKNHNLGPYEILKVHENSNVTINYNGKPK
FT                 TVHTNKLSRCHTNISLSRNMDNMIIQMIIIFTLFRNNHAIIGYDCGTTTPN
FT                 ITTFSLLDSGECDFHNTQVNSTSVNIELIQVAEFREVTVIQCKIEIHRTVS
FT                 SCGIFGHLIPTENGEQEYIYEISHEQCKLIHDTGIFKYDNIHTIANLKVNS
FT                 TITKGIDFAGSAEGNSCSGASYADSFGSWNKVFVHGLIKITLIQNSAKVSL
FT                 KNDKLRLSSGTVCKFSEKHCIDMEGGHTFWEVLPQGECFRNSFDILFKGIA
FT                 TKYFSDTNHEIVYALNSNEVTFALAIKDKIMRCNREFIRTEHPKLLIIEKS
FT                 SYLNAYHFQNDKISNINSVNLDLFTYVNSKFVYVEKHLGKQLNNLYFNLIT
FT                 EKCEIERKVIQNSLAIASLSPDEFAYSIMKKPGYIARIAGEVVHLIKCVPK
FT                 TVKILHLKECYNQLPVLSGNETWFLTPKTHILVKKGVQVNCNSIVPTYYRI
FT                 SEEWIKFTPTPTKTVSPHILKPNTKIGWTFESVETLATSGVYSQEELDQLQ
FT                 QQLMFPIEKASLLNVIAREMAGEKTSENIFSENTIRNLAESTWHMLIEKLI
FT                 TCGSFSSVFIMILIILHIGKLIIDTIIRGYTLHTIFGWSIHLCGAIFSSVT
FT                 HLLTTLENTSSIKEQIHTNKKKNRVYEETELQEIKITAPISAPMPPPIPSR
FT                 PPHANTYTSKITIPKIQTQSKASISLFSLTPL*"
FT   CDS           join(763..2040,2027..2482,2337..3098)
FT                 /product="Gypsy-24-I_NVi_1p"
FT                 /translation="MSDNKKEVNKNDTQRPRLTRNAVRENPALTKDIVIPN
FT                 IQNPFTKSKKIIRSPPTNSGWIKDSQQVLLSDINNKKLEDSQQIVTPDTDQ
FT                 QSKQNLEIQEILKENKDLKQEDTTPGRTTGAIKKQIKQLNKNHLSLSIPLT
FT                 PAKQKEFETVEKPNHSTFSPITPATAIPIGLDRTVNNTKFLQGVEETSLID
FT                 IEGISDQPSLIGNPSNSKFNFTFDFDNLLDGNRANDINMAENPLRLSLKYV
FT                 ANLVPEFDGKNISVNEYIEKLKHAKNMLSAADQANLIPILKIKLKGETYKA
FT                 MLNATINTIEDFIKAIRQIYPSTENMHSLYGQIEEILQKPDESVLSFANRL
FT                 QELVLKIKDSKEVQGLTATEKAAFETKINNDAFQGFKEXLKQEIRIELGAV
FT                 TNLTEAITKAIEIESKFNKRGILCHKINNIYIIIYIYSDSHNHNTSNATIY
FT                 ACQICDSYGHEALFCHNSGCVYCKKKEHLSNNCRKVKDKIELICTFCNNQG
FT                 HSIDACKLNKIKGNHCQYCQVMGHTVTQCPFIIEYELCWKCKESGHDPTAC
FT                 TKKADVSNSCEFCNSAGPYDKSMPRGYMQTMNMNCVGSVKKVAMIQLPVQK
FT                 RQMLAIHVNFAIARAHTIKACPEVICKRCNQLGHPVKYCPLVRSPIANNRF
FT                 IMCSICNAEDHEAIECEQVKILVAQHKTKSFQTNIQCQVCDEKGHSAKNCP
FT                 QIGNKQQSFNNSNSKYQNFSNSNNFRKYSNYNNQNTNFQNTNNSQIKCDYC
FT                 EMRGHPVYKCRKLKNLENIARREENCTYCNKSGHNIKNCTEVKSLEMRASK
FT                 FCSLCKNTNHMTEECFRLQNQQSVESGNE*"
XX
SQ   Sequence 10116 BP; 4184 A; 1451 C; 1742 G; 2733 T; 6 other;
     ttggttccga tacaaatcga attatagagt cttaaaagaa aagttacata taaaaaaaag        60
     ggaaaatttt aacaaattaa tcaaactaca gttgcatttg taaatttaaa caaatataaa       120
     ttacatatat aaatgcccat accccaaaag taagtcaaag tgttgaaaaa aaaaaaaaaa       180
     aaacaagtgg gtgctagaat tttgtgcaaa aacctatcct aaagacgctg aaaagcgact       240
     tatcctttga tcgcttaaat agcgattact cttttccata aatcaatatc ctaacggaaa       300
     ccatataact cgggaaattc agttagtcaa ctataaaatt atatctgaat aaacagagat       360
     aaaaaaaaaa tatatatata aaatttgcaa acaaaacggt agttagattg gaaaatcaat       420
     cattaaaaca gaaatataaa atcgcgagtt caaagaaaga ttgggcgagt gacctgcttg       480
     cgctcatcgg cgatcgcgct cacctgacgt tgcagtgtca gcaaggcgat tgaaagaagc       540
     gcttcaaatt ggtagcgctt gtgtcactag gtcaatcgag aatattcaaa acatatgtga       600
     agaaattaat tacgcgcata cctagaaagt agatcgtgtg ttaaaatata agtaggacag       660
     taaaatttcg tttgaattgt ttgtaagcga tttgaaattc taaaattcgg actaaataag       720
     attttgtaat aaataaaaag gtaacaaaaa tgagattatc aaatgagtga taataagaaa       780
     gaagtaaata aaaacgacac tcagaggcca agattaacta gaaacgctgt tcgtgaaaat       840
     ccagcattaa caaaggacat agtaatccct aatatccaaa acccattcac aaaaagtaag       900
     aaaataattc gatcgccgcc gacaaacagc ggatggataa aagatagtca gcaagtacta       960
     ttatctgata taaataataa aaagctagaa gatagccaac aaatagtaac acccgataca      1020
     gatcagcaaa gtaaacagaa tctagaaatt caagaaattt tgaaagaaaa taaggacttg      1080
     aagcaggaag atacaacacc agggcgaact acgggagcaa tcaaaaagca aatcaagcag      1140
     cttaataaaa accatctaag cctaagtata ccgctaacac ctgcaaaaca aaaagaattc      1200
     gagacagtag aaaagccaaa tcattcaaca ttttcaccta taacaccagc cacagcgatt      1260
     ccaataggcc tagacagaac agttaataat accaaatttc tacaaggagt tgaggagaca      1320
     tcgttaatag atatagaagg tattagtgac cagcctagct taattggaaa cccaagtaat      1380
     tcaaagttta attttacttt tgattttgat aatcttcttg acggcaatcg tgccaacgat      1440
     atcaacatgg cggagaatcc gctacgctta tcgttaaaat atgtagctaa tttggtacca      1500
     gaatttgatg gaaaaaatat ttcggtaaat gaatacatcg aaaaattgaa acatgccaag      1560
     aatatgttat cagcagcaga tcaagctaat ttaattccaa ttttgaaaat taaattaaaa      1620
     ggggaaactt acaaggcaat gttgaatgca acaatcaata ctattgaaga tttcataaaa      1680
     gcaatacgac agatataccc atctactgag aatatgcact ctctgtatgg gcaaattgaa      1740
     gaaattttgc aaaaaccgga cgaatcggtt cttagttttg ccaatagatt gcaagagtta      1800
     gtgctgaaga ttaaggacag caaagaagta caaggtctca cagcaacaga aaaggccgcg      1860
     tttgaaacta aaataaataa tgatgctttt caaggtttta aggaakgatt aaagcaagaa      1920
     atcagaatag aattgggggc agtaaccaat ttaacagaag ccattacaaa agctatagaa      1980
     atagaatcga aattcaataa aagaggaatt ttatgccata aaataaataa tatatatata      2040
     tagcgattca cataatcaca atacaagtaa tgctactata tacgcatgcc aaatctgtga      2100
     cagttatggg catgaagcat tattctgtca taattcggga tgtgtatatt gtaaaaagaa      2160
     ggagcatttg tcgaacaact gcagaaaagt taaggataaa attgaattga tttgtacatt      2220
     ttgcaataat caaggacatt ctatagacgc gtgtaaactg aataaaatta aaggcaatca      2280
     ttgccaatat tgccaggtta tgggccatac agtgactcaa tgcccattta taatagaata      2340
     tgaattgtgt tggaagtgta aagaaagtgg ccatgatcca actgcctgta caaaaaaggc      2400
     agatgttagc aattcatgtg aattttgcaa tagcgcgggc ccatacgata aaagcatgcc      2460
     cagaggttat atgcaaacga tgtaatcaac ttggacatcc agtaaagtac tgcccgttag      2520
     taagaagtcc gattgcaaat aacagattta taatgtgctc aatttgtaat gcagaagacc      2580
     atgaagccat agaatgtgaa caagtcaaaa tattagtagc gcaacacaag acaaaatctt      2640
     ttcaaacgaa tattcaatgt caagtctgtg atgaaaaagg ccactcagct aaaaactgtc      2700
     ctcaaatagg taataaacag caaagtttta ataattcaaa tagtaaatat caaaatttta      2760
     gtaactctaa taactttaga aaatatagca actataacaa tcaaaatact aattttcaaa      2820
     atacaaataa tagccaaata aagtgtgatt attgcgaaat gcgtggtcac cctgtatata      2880
     agtgtagaaa attgaagaat ttagaaaata ttgctagaag agaggaaaac tgcacatatt      2940
     gtaacaaaag cggtcataac ataaaaaatt gtaccgaagt aaaatcattg gaaatgcgtg      3000
     cgagcaaatt ttgcagtctc tgcaaaaata caaaccatat gacagaagaa tgtttccgat      3060
     tacaaaacca gcagagcgta gagtcgggaa acgaataaag ccttctcgga ccgagtggcc      3120
     gagaagttac aacacaaatc cactcagcaa tacagaaaac acggttaaaa caaatgtcat      3180
     aacagcatct caraatcaga acagggcaaa ttatgaagat catgatcagc aggaggttca      3240
     attgctcgag gaaaaagaaa tcaaactaga aatatatcat ttaaaattaa atgatttatt      3300
     agaatatgtt gagataataa atccctattc taaaaattta tgcaatttac ttgtcgatag      3360
     tggagcacaa ataaatataa taaaacaaaa tcaaattcct ataggaacac aactgctaga      3420
     taaaaaaata ttattatccg gcatcgcaaa taattctata aaaacattag gtatagtaga      3480
     actaccgata aatggtaaat attttgattt tcacgtagca cctaatgatt ttgtgattcc      3540
     atatgatgga atactgggaa ttaaattgtt aagaggaagt aaactacgtt tagatgaagg      3600
     gtacttagag gtcaataatg taaaattaaa attacagaga ggtccgatta caaaaaccgg      3660
     aatgaagtta agccaaaaag aaactctgaa tataatttta aaagaaatta ttcgcgacaa      3720
     tgatgcatat aatatagaac aacaaaatat tttaaaagaa acggatcatg agaataatat      3780
     tgataaaatc agaatgcaag atgaagcaaa tcaagagatt tgtgaagaga gtaggactag      3840
     caaaatcagt aacatagagg atgagttaaa gcaaactgaa caatcacatg aaaaacagaa      3900
     tactgagata aatgaggcag aaccattact agaaaatgat agtgtcacag aaaacacatt      3960
     taataatgat gttttcgcca ttttaaacac aatatcgaaa atccatgaaa taaatgacaa      4020
     atcagaatta caaagtttac aacaaaaaaa gataaatgaa aacaagccta ggaacttgga      4080
     aaattttttg aaaaatgatg ataaaaatat agaaaatttt atacttgacg taaatacagt      4140
     attacaagag caagtaacgc ctgaagaagc gccaacccaa accaaaaggc tgaattataa      4200
     ggaaatatta actattatga aggaaaataa tgtaaaacta tctaaagcag ataaaaaaat      4260
     aatttttgaa gaaaaaaaat atcaatacgt ttcaatagac atcgattata taccagaagg      4320
     ggctcaagta gtagaagaac ttaatattga tgagaaatta attctaaata tagaaactga      4380
     aattttaaat aaaaaccaag aaaataaaac cagaaaaccg agtcggaagg aaatattgcg      4440
     aaagaaattg caattaaaaa acggaggtaa aagaaacgac gaaagaatcg agcgaatgat      4500
     aaaccaatat ccggatgttt tttggataga gggcgataaa ttaggtacat gtaacgtaga      4560
     acaacatgaa atcaacttaa cttctgacaa gccagtatac gtaaagcagt atccattagc      4620
     acacaaatct aagggaatag ctttaaaaga aatgggcaaa ttacaagaaa cgaaagcaat      4680
     cagagaaaca aaaagtgcgt tcaatgcgcc agcgttagta gtcccgaaga aggagctaat      4740
     cccaggagag aaaagatata gattggtgat agattataga gccttgaatg aggtgactat      4800
     agccgatcca tatttacttc ccaatattaa tgaaatttta gacttaattg gaaagaggaa      4860
     atattttgat gtattagatt taaaatctgg ctttcatcaa gtaaagatga gaccttcgga      4920
     tattcacaaa actgcattta gcttacatcc attaggaaga tttgaatttg tcgtcctacc      4980
     gttcggtctt aaaaactcag cccggacttt tcagcgggtt ataaataaag ttttagccaa      5040
     atatatcgat aaaatatgtt ttaattatat tgacgacatc attattttcg gtgacacgat      5100
     tgaagaatta gaggaaagat tcggtctaat agctcaagca ttaatagaag cagggctcaa      5160
     attagagccg gaaaaatgtg aatttagcaa gacagaagtg tgttttttag ggcatgttat      5220
     tagtgaagca ggtataaaac cagatgaaaa caaaatacaa gcagtaaaga aattcccaat      5280
     tcccaataac gttaaaaagg ttagacagtt tttaggtttt gtaaattatt atagaaggtt      5340
     tattaaaaat ttagcagaaa ttaccaagcc actaaccata ttactacaaa aggataggcc      5400
     atttgcgtgg ggattggagc aacaaactgc atttgataaa ctcatagaat cattatgttc      5460
     agcaccggtc ttgcaatatc cgcaattcga taaaccgttt ataataacga cggacgcaag      5520
     tcaatatgcg ttaggttgtg taatttctca aggggagata ggtaaagaca gaccaatagc      5580
     ttatgcatca agagtactgc agcctgcgga acttaaatat gcaacctatg aaaaagaagc      5640
     tctgggtatt atgtatgcta taaaaacatt taaaaattat atttatggaa ataaatttat      5700
     aattgtaact gaccatagac cactattatg gttgaaatct gcggataata acgaaagggt      5760
     tcagagatgg agattaaaac tagcagatta tgattatgaa attgtgtata aagctggaaa      5820
     acaaaataca aatgcagatg cattatcaag gaatcctgta gcgaaaatgg atatatgcgt      5880
     agtaacaaga gcccagaaaa ggcgagaaga aaatcagacg tcgcaagatt tgacgaatga      5940
     tgaaaagata aaaattatta atgaacaaag atcgaaactt cataataaga agttacagat      6000
     aaaaaaacgc aaaagggcca aggtacaaaa gtctagaaag aaaagtgtac cagaggagga      6060
     aaaaccacac gataagcaga aaaatatagt atattccaag aatacgatac aatttcgcaa      6120
     tgataatatt attcatatag ttaataataa aggagagtca ttagaagaca atatagggga      6180
     attattaaaa aaggaaaata ttcattggaa taaaaactta agtgataatg aaattgaaat      6240
     attaaataag ggtaaaaata aaatttttgt tttatgttta aatacagccg aatcagtagt      6300
     tactgttaaa actaatatca ttaagttatt tcagttatta aaaacaatat ttttgcaaaa      6360
     aaattattta atatttagca tttcaaaaga tctaataata aataatataa gttgggagga      6420
     aattgaggaa attttgaaaa ctatatttga aggtacaaat ataaaggttg tgatctgtct      6480
     aaataatata gtttatgtag aggaaaagca aagagataaa atatttgaaa tgctacactc      6540
     tactaaaata ggaggacatt cgggtataaa tagaacatat aatagaataa aagataagta      6600
     ttattgggaa aatcttaagg tagatattca aaacagagta aatgcatgcg aggattgcca      6660
     gagaaataag ctaaaaagaa taaaaattaa acaacctatg gtaattacgg atacaccctt      6720
     aaaaactttt gataaaatct gtatggatgt agtaggtccg tttaatgtta ctaaaaataa      6780
     taataaatat atactttcaa tacaggatca actaactaaa tttataatta tagcatctat      6840
     gtcagatcaa acggcggaat ccgtagctga cgcgttagtt aagaaattta tatgtatttt      6900
     tgggtcacca aagctcgtac taacagatag aggggcaaat tttacaagta aactattaaa      6960
     acaagtagcg cgtagattta agtttacaaa gattgaaact acggcatttt caccccaatc      7020
     gaatggttct ttagagagag ctcatcaccc tctgtgcgaa tatataaaaa attttacatc      7080
     aaagaaaatc gaatgggatg agttgttaga gttcgcacag tttcattata acacgagcgt      7140
     tcatacgagc cataagttca caccacatga actagttttt ggttatccag ctagacttcc      7200
     atctagcgaa acattaaaaa aatcagagca attgccaacg tttaatggat atttagaaaa      7260
     tcttgtatta aaaatgcaag agatggcaaa attagctcga gaaaatttga tagattcaaa      7320
     attaaaatca aaagcatatt atgatcgatt tataaatcca atcgacttaa aaattggtga      7380
     aaaggtctgg ttaataaaag aaccaaaacc aggaaaattg gagaaaaacc ataatttggg      7440
     tccatatgag atcctgaaag tacatgaaaa tagtaatgta actatcaatt acaatggaaa      7500
     accaaaaaca gttcatacaa ataaattaag tcgttgccat acttgatact aaaatatttc      7560
     tctttctagg aatatggaca acatgattat tcaaatgatt ataattttta cgctttttcg      7620
     aaacaatcac gctataatag gatacgactg cggcacaaca acaccaaaca taacaacatt      7680
     ctctctactg gactcaggag aatgcgactt ccacaataca caagtaaatt caacaagcgt      7740
     caacatcgag ctgatacaag tcgctgaatt ccgagaagtc acggtaatac aatgtaaaat      7800
     agaaatccac cgaacagtat caagctgtgg aatcttcgga catcttattc ctacagaaaa      7860
     tggagagcag gaatatattt atgaaataag tcatgaacaa tgtaaactta ttcatgatac      7920
     gggaattttt aagtatgata atattcacac aatagcaaat ttgaaggtaa attcaacaat      7980
     tacaaaagga atagattttg ccggaagtgc agagggcaac tcttgctcag gtgcatctta      8040
     cgctgatagt tttggatcct ggaataaggt atttgttcat ggcttaatta aaataacgtt      8100
     aattcaaaat agtgctaagg ttagtttaaa aaatgataaa ttaagattaa gctcaggaac      8160
     ggtgtgtaaa ttttctgaaa aacattgtat agatatggaa ggaggacaca cgttttggga      8220
     agttttaccg caaggggaat gttttagaaa ctcttttgat attcttttca aagggatagc      8280
     aacaaaatat tttagcgata ctaatcatga aattgtttac gcactaaatt caaatgaagt      8340
     aacgttcgct ttagctatta aggataaaat tatgcgttgt aatagagaat ttatacgtac      8400
     agaacatcca aaattactaa tcatagaaaa gagtagttat ttaaatgcgt atcattttca      8460
     aaacgataaa attagtaata taaatagcgt aaacttagat ttatttacat atgttaattc      8520
     gaaatttgta tatgtagaaa agcatttagg gaagcagcta aataatttat attttaattt      8580
     aataacggaa aaatgtgaaa ttgaaagaaa ggtaatccaa aattccttag ccatagcctc      8640
     tctttccccg gatgaatttg cctatagtat tatgaaaaaa cctggataca tagcaagaat      8700
     tgcaggagaa gtggtacatt taataaaatg tgtaccaaaa acagtaaaaa ttttgcatct      8760
     aaaggaatgc tacaatcaat tgccagtttt atcaggaaat gaaacctggt tcttaacgcc      8820
     aaaaacgcat attctggtga agaagggagt tcaagtaaat tgtaactcaa tagtacctac      8880
     atactacaga atttcggagg aatggataaa attcacacca acaccaacta aaacagtatc      8940
     acctcatatt ttgaaaccaa acacgaagat tggatggaca tttgagtctg tcgaaacact      9000
     ggcaacgagt ggagtatatt ctcaagaaga gttggaccaa ttacaacagc aattaatgtt      9060
     tccaatagag aaggcatcac ttttaaatgt gattgccaga gaaatggcag gagagaaaac      9120
     atctgaaaac atattttckg aaaatacaat aagaaattta gccgaaagta catggcacat      9180
     gcttattgaa aaactgatca catgtgggtc attttcatct gtgtttatca tgatacttat      9240
     aatcctgcat attggaaaac tgatcatcga taccattatt agaggctaca cgttacacac      9300
     gatttttgga tggtcaatac atctatgtgg agccattttc agctcagtaa cgcatttatt      9360
     gacaacactg gaaaatacaa gcagcataaa agagcagatt catacgaata aaaagaagaa      9420
     cagagtttat gaagagacag aattacaaga aataaagatt accgctccaa tatccgcccc      9480
     aatgccacca cctattcctt cacgcccacc acatgcaaat acctatacaa gtaaaatcac      9540
     aataccgaaa attcagacac aatctaaggc tagtatatct ttattttcat taacaccayt      9600
     ataaaagaaa tctattatat aaaatcccta taatgttatt ctacgtatac aacaamatag      9660
     gtatacaaaa tttatatttt ttatgaaaat tgttagttta tagatatttg agactaatgt      9720
     taaaactccg attatattat tctgcatata cgatgtattg atagagtaaa tttgtattaa      9780
     aatcaactga tgtttttaat gaatgttatg taaaatgata tctataagat ttttaaatat      9840
     gtaaataaaa ttccagcata tttagtaatt taaatataaa acagtaaaaa tgaaaacatt      9900
     taatgatttt aaacaataat aattaataaa agaaaactat tcttgaaatt ttwaagtaaa      9960
     taagttggaa tttttaagtg aaaaaaaaat tattgttaaa atatgttaga attttaagga     10020
     tcaaaattat ttgtaaaccg ctagttaatt ttagttttat gtaatattac aataaagttg     10080
     ccattgtacc aatgggcaat cggctagttg tggggg                               10116
//
ID   Gypsy-24-LTR_NVi repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   22-APR-2009 (Rel. 14.04, Created)
DT   22-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-399
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 786-786 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 399 BP; 128 A; 87 C; 76 G; 108 T; 0 other;
     tgtgacgtcc tgcgacgtat tgcatttaag caatatcagc ggaatcgtta cgaagccgaa        60
     aactgacgac tcagattaat aagtagatca gcgaggttaa tgagtatccc ctgtatacgc       120
     cgagcgacca gttgtaatta tacactcgat ctggactctt gtacgacgct cctatccgtc       180
     gacaagagtt atccgggctt aagtcgcgat cccgatacct atagaacttt atcttgaata       240
     aatcgtgaaa gtcaatcaac tacaagtgtt tttctattga atatatccat cctgtataag       300
     cctgactaca gcacagcagc agagtttcca gcccaagcag ttaaacccaa gtaagtaaaa       360
     attcaataat taattataga tcggaattgt gacttaaca                              399
//
ID   Gypsy-240_AA-I repbase;    DNA;    INV; 4821 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-240_AA_;
KW   Gypsy-240_AA-LTR; Gypsy-240_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4821
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1081-1081 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3765-4223] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2019..4751
FT                 /product="Gypsy-240_AA-I_1p"
FT                 /translation="MSASIKIDKTVPPVRQSYRRIPIPLEEVTILKLKELE
FT                 RQDVIERVYEASEWISPMLVKRKSLNDVRIIIDLREANKAVVREVHPLPTM
FT                 EQMMAKLRGSTVFGKLDIKQAFHQLLLREDCRYITTFISPLGLMRYKRLVF
FT                 GLSAAPEIFQKCMETILADFPWLVIFIDDVLVHAPNKESLKLRMSLVKNRF
FT                 KQYGIVLNENKTVECATEIDFLGYQLSAEGIKISPGKLEAIKTFRMPKSAE
FT                 EVRSFLGLATFVSRHIPNFSTISSPLNALTRKGTPFEWKDSHQEAFETLKD
FT                 LMSKSETLAFFNPNLETYVETDASPVGLGAVLYQKSVNGTFNIICYASKTL
FT                 SEVERRYAQTEREALALVWAPEKFHYYLYGMSFWIVTDHKPLVSIFGDRIK
FT                 PSARIERWKIRLMSYDYKVLYRPGKTNIADTLSRLCQGESGDAESYDEECE
FT                 RVIRLVSTDVCPVAISLDEIIEATQHDIELTELMRWLPYPPRRWPSTLTRY
FT                 RPIADDLSSDGDIVLKNKKIIIPRKLYDKILKLGHEPHLGNTAMKKRLREK
FT                 VWWVRMDSMVEEYVSSCNGCLLVSEPATEPMVRSPLPDKPWKKLALDFTEV
FT                 TKGIHLLVIVDYYSRYPEVEIITSMTAKSTIFKLRTIFARFGYPHEIVCDN
FT                 GPPFTSDEFVHFCTAFGIVLKHSIPYAPFQNGLVERHNRTLLKTVKISVAM
FT                 GRDWKNDLYDFLLAYRNTPHTVTNISPAKLMFGRNLKDKIPDMLTEESEEK
FT                 DNVTSIDDKNKEKGKKYGDRKRKAKHSTVDIGDHVLIKNVVKQNKLTPTFN
FT                 PQPHIVVKKTGTRLTLRNLDTGVELDRHVNHVKILISNSPFRSPELSDPPM
FT                 NNTVQSPILEKSCTKPKTTVESDSAKMSNQNQLSNSGPIRNRSTRNHRKPG
FT                 YLKNYVT"
XX
SQ   Sequence 4821 BP; 1599 A; 867 C; 1063 G; 1290 T; 2 other;
     ttggcatacg agtgattggg attttttttt ctggagcatc ggcggaagtc aaacgaggac        60
     atcagtacca ttttggaaaa atgacatcgg taaagtatag aattcaattt tgtgtgatgg       120
     ttaaatgaga aaaaagtgca ttcgtgaacg caagaagtga actgaaaatg ggatatttat       180
     tcctatcgtc aaatccatcg agaaaatgga aaatctattt ttcataggaa agacgatagg       240
     aaaatattcc agttagtttc catgagcaac acaaacggtg tgggaacctc gagttccagc       300
     ccaccggaag gaacaagcga aggggattcc agttcgctgt ttcaaaggaa ttataggagg       360
     ttcaaagaat ctcagtctta ttcctggaag aaacgtaggg aactttccgg aagttctagt       420
     ccgtttctgc attcaagtat agggaataaa gttattccag tctgcttgga gagggggaag       480
     aatgaaaaga aaaaccggaa aaaatgttgt ttggaaacag cctatgacta ctagcttgcg       540
     ctcacgttat gaaaaaaaga aaacaaaaat gaatttgaaa atcgtcagtc tgacagatac       600
     gtasatgttg ctmtagtaac taggaagcat tatttttgtt gacaacatat acgttatgtt       660
     tcagttgaat tacaacgtta cacctttttg tgaatctgga gccggcctcg ttagttctcg       720
     ttgggaagaa tggagagacc agtttattgc atacctcgac ctgaaaggaa tatgtgacgt       780
     agacgaaaag cataaagcac taatatgttt tggtggacct gacgtgagga agattgccaa       840
     ggatgtgact gtaagcggaa atattttgga cgatgcttat cgtgctgtac tggaagcact       900
     cgacaattat tattcacctc gaatgtcgtt gcgttatgaa cgattcaagt ttcggcaaat       960
     gactttcaac cctaaagaga agctggatca gtttgttata cgattaaggg ctcaagctgc      1020
     cgcttgcagt tatggtgacc aaattgaggg aatgataatg gaccaaataa tttacgcaac      1080
     tcaaacggat gacaaactgc gatctaagta tttggaggtc gacactactt tagacgaaat      1140
     gttgaaaatt ggtcgcacgc atgaaaccgt caataagcag gtatattaat aatttggtta      1200
     tttttcacag attttaagaa aaaaaaatat taggttcaag aatttcgcat caatccaacc      1260
     gacaattccg agctaaacgt gatagacgat tccgtaaaac aagcgaaacc caggctgtcc      1320
     tgcagtcgtt gtttggggaa tcacctgcct actgattcaa aatgtccagc tcgtggatcg      1380
     cattgtaacc gatgcaataa aatgggacat tatgcgcgct gttgcagagg tatgaagaaa      1440
     ccgtttctac aacaccattc gaaatcaatc agcagaaagc gtcaagcata cgaacaaatg      1500
     caggaagatc gtcgtgaaca aaagccgaag tttgtacgag aagttgatga cgtcaccaag      1560
     acagcggaaa tacgcgagtt attccatttg aatggtaagc gcacaacagt cgtctccgta      1620
     ggtggggtcc agctccggtt tatcgtggat actggggcag acgaggacgt tttgagtatt      1680
     gaagattgga acacattaaa aaggactgga tttgaggcgt ttgcgattag aaagggaagc      1740
     gctaaggttt ttcaagctta cggatcaaga aagccgttga ccgttctagg agaagtcgac      1800
     gcgatgttga aaacagcaga tgaatcttta agaaccacat tgtttgtgat tcaggatggt      1860
     aagcattcgc tactttccgg acgtagcgca gaaaagctcg gtgtagttaa atttctgaga      1920
     tcggtgagtg aagagatttt cccggttatc aaaggtaaga atctgtaatt gatttaaaaa      1980
     taggatagat tattatattg taaattcatt atgcagatat gagtgcaagc attaaaatag      2040
     ataaaaccgt accccctgtt cgtcagagtt atcgccgtat cccaattcct ctagaagaag      2100
     ttactattct gaaactaaag gagttggaac gtcaagatgt aattgaacga gtttatgagg      2160
     catcggaatg gatatcgcca atgctcgtca agcggaaaag tttgaatgat gtgcgaatta      2220
     ttattgacct tcgtgaagcc aacaaagccg ttgtaagaga agttcatccc cttcctacaa      2280
     tggaacaaat gatggctaaa ttaaggggca gtacagtttt tggaaaactt gatattaagc      2340
     aagctttcca ccaacttcta ttacgagaag attgtcgata tatcacaact tttatatcgc      2400
     ctttgggcct aatgcgttac aaacgattag tatttggatt gtcggcagca ccagaaattt      2460
     tccagaaatg tatggaaacc atacttgcag attttccatg gttggtaatt ttcattgacg      2520
     acgttctggt tcatgctcca aataaggaat cactgaaact aagaatgagt ttagtgaaga      2580
     atcgtttcaa gcagtatggt attgttttga acgaaaataa gacggtagaa tgtgctacag      2640
     agatagattt tcttggatat caattatctg ctgaaggtat caaaatctca cctggaaaat      2700
     tagaagccat aaagacattt cgaatgccaa aatctgccga agaagttaga agttttttgg      2760
     ggttagctac cttcgtaagt cggcatatac caaacttctc aacaataagt agtcctttga      2820
     atgcattaac aaggaaaggt acaccatttg aatggaaaga ttcacatcaa gaagcttttg      2880
     aaacattgaa ggatttgatg agcaaatctg aaacattggc gtttttcaac ccaaatctag      2940
     agacgtatgt agaaaccgat gcgagtccag tagggttggg tgctgtcctg taccagaaat      3000
     ctgtaaacgg aacgtttaac attatatgtt acgcctcaaa gaccctatct gaggtagaaa      3060
     gacgctacgc tcaaacagag agagaagctt tagcattagt atgggctcca gagaagttcc      3120
     attactatct ctatggaatg tcattttgga tagtcactga tcacaaacct ttggtttcaa      3180
     tatttggcga tagaatcaaa ccttcagcaa gaatcgaacg gtggaagatt cgattaatgt      3240
     cctacgacta caaagttctc tatcgaccag gcaaaacgaa cattgcagac actctttcgc      3300
     gattgtgtca aggagaatct ggtgatgcag aaagttacga tgaagagtgc gagagagtaa      3360
     ttcgtttagt ctcgaccgat gtatgtccgg ttgctatttc acttgatgaa attatcgaag      3420
     ccactcagca tgatatagag ctgactgaat tgatgcgttg gctgccatat ccgccaagac      3480
     gttggccaag cactcttaca cgatatagac caatagctga tgatctttcc agtgacggtg      3540
     atattgttct gaaaaataag aagattatca ttccacgaaa actatatgat aagatactta      3600
     aactaggtca tgagccacat ttgggaaaca cagctatgaa aaagcggttg agagaaaaag      3660
     tctggtgggt acgaatggac tctatggtag aagaatacgt cagttcatgc aatggatgcc      3720
     ttctagtttc cgaaccggct actgaaccga tggtaaggtc cccattacct gacaaaccat      3780
     ggaaaaagct ggcgttggat ttcacagaag tgactaaagg aattcatttg ttggtaattg      3840
     ttgattacta ttcaaggtat cccgaagttg aaatcatcac ttctatgact gccaaatcta      3900
     cgatattcaa actccgtaca atatttgcaa gatttgggta ccctcacgaa attgtgtgtg      3960
     acaatgggcc accttttaca tcagacgagt tcgtacattt ttgcaccgct tttggtatag      4020
     ttcttaagca ttcgatccca tacgccccgt ttcaaaatgg actagtagag agacataaca      4080
     gaactcttct gaaaacagtc aagataagcg tagcaatggg aagagactgg aagaacgacc      4140
     tttatgattt tcttctggct taccggaata caccgcatac ggtcacaaac atttctccag      4200
     caaaactcat gtttggtaga aatttgaaag acaaaatacc tgacatgctg acagaggaat      4260
     cggaggaaaa ggataatgta accagcatag atgacaagaa taaagaaaaa gggaagaaat      4320
     atggcgatcg gaagcggaaa gcaaagcact ctacagtcga tatcggtgat cacgtgttga      4380
     ttaaaaatgt ggttaaacaa aataagctca ctccgacttt caaccctcag cctcacatcg      4440
     tggtgaagaa aaccggaacc cgccttacgt taaggaatct cgatacagga gttgagctag      4500
     ataggcatgt taatcatgta aagatcctta tttctaacag tccattccgc agtccggaac      4560
     tttctgaccc tccaatgaac aacacagtac agtctccgat tttggaaaaa tcttgtacta      4620
     aaccgaagac taccgttgaa agcgacagcg cgaaaatgtc taatcagaac cagttatcaa      4680
     attcaggtcc aatacgaaac agatcaacaa gaaatcatcg aaaaccaggt tatcttaaaa      4740
     attatgtaac gtaatcaaaa atacaaaatg taataattca taatatagaa atagattctt      4800
     taatataaac taagggagag a                                                4821
//
ID   Gypsy-240_AA-LTR repbase;    DNA;    INV; 112 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-240_AA_;
KW   Gypsy-240_AA-I; Gypsy-240_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-112
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1082-1082 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 112 BP; 38 A; 21 C; 20 G; 33 T; 0 other;
     tgtagtaggc taagaatcat aaattataat catagcaagc tggtgggaaa taaacactct        60
     ctttcgatac cgacattcaa gtagtcaaca cgtgttttac tgagttccta ca               112
//
ID   Gypsy-241_AA-I repbase;    DNA;    INV; 6428 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-241_AA_;
KW   Gypsy-241_AA-LTR; Gypsy-241_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6428
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1083-1083 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5450-5917] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..1886
FT                 /product="Gypsy-241_AA-I_2p"
FT                 /translation="MEFEMRPLPPFRCEQIERSKLSREWRSWRNALECYFE
FT                 AHSIFDQRIKRAKLLFLGGPQLQRVFEHLADTDKIPLVAVKETWYDVAIEK
FT                 LNEYFQPARQHTLERHRLREMKQMKDERFAQFVMRLKQQSADCGFDKYSTE
FT                 ISKILTEITLIDVIVQGCTSNELRRRILKEDHSLAEIEALGAMFECVDEQV
FT                 KSLSNVTANTQEKIFKVTESKKVEDKPDTNGQLSCYRCGNTGHFSKSPNCP
FT                 ARNKTCRRCKRIGHFESVCRGFSKRPAQKLNDNITAKKVRAIETVDSETEL
FT                 MLPGKDSKKDEQTPSKTYYAFYTGNETNMIECHIGGIKWKVIIDSGSECNL
FT                 ITKNAWEKMKTCNIAVQSSTKGCDRVLKAYGSNVPLKVNFKIRIRYDCTIS
FT                 IINTFMFYIGCWFIHG"
FT   CDS           4469..6400
FT                 /product="Gypsy-241_AA-I_1p"
FT                 /translation="MNKFIYNLATIDEPLRRLTLKKVPFEWTEEHTNAFEK
FT                 IKQEMRIAGKLGYFNLNDRTVVTTDASPVGLGAILAQYDDNDQIRVISYAS
FT                 KSLTDTEARYCQTEKEALALVWAVEKFQRYLIGRSFELVTDCKALQYLFTT
FT                 RSRPCARIERWVLRLQAFDYKVIHVAGECNVADALSRLATLNPLPFDQNEE
FT                 LMIREVAVSAANAMALDWQQIEDAPKEDEEIRNIIALLDSNRQRELSVPYR
FT                 VIANELCHIGDVLMRVDRLVVPSKLRTVVLNLAHDGHPGSRMMKSHLRSSV
FT                 WWPKLDQQVEEFVRNCRGCCLVSAPDAPEPMIRKPLPSRPWEDIAVDFMGP
FT                 LPEGQYLLVVVDYYSRFIEVKEMNTISANDTIQELSVVFSRYGFPNTLRAD
FT                 NGPQLSEHCEELKLFCRENGIKLVNTIPYWPQQNGEVERQNRSILKRLKIS
FT                 QELGKDWKKELSQYLLVYHSTNHSTTGKSPAELMFGRRIRNKLPHVPMYRL
FT                 DDEEVRENDLVQKEKGKEYADGKRKAKQSEIVVGDIVLMKRMKRTNKLDTD
FT                 FCKEEYIVKRREGSDCTVESMESGKQYRRNVSHLKRVGKKTESNNVTEASE
FT                 ENVDLQVQDGNNKTDEIQLELNEDENQRTRKRIRIEPHHFKDYIAH"
XX
SQ   Sequence 6428 BP; 2110 A; 1131 C; 1437 G; 1750 T; 0 other;
     acctggcgac gaggatgaac tccggtaaga tttcattacc acaataacga aaaaacgtga        60
     gcttacatag taaaaaaaaa aaactgaaaa taatgccaga actgggagag ttcactttga       120
     gaagatgctt aaatgcggag ttttatgtga aagaaccagt aaaactcgga tcgggagggt       180
     ccactgaagt ttataaaaaa aactgtcttc tggcagtgcc cgggctggga gagtccacta       240
     tcaggttact gtaagtaaaa aaaaaaaaaa aaaacgggcc gggagggtcc actgaagttg       300
     acaaatttgc tgctagttgg caattcctgg actgggagag tccactaaat gattatgaat       360
     atcttgaaat tttctgaatt tgacgaatat acaggacgat cgtttttgaa atagtgaaaa       420
     aaaaaaatct tactcaacat tgtaagtgtc atccagaatg ttcgaaaaaa aagagttgct       480
     atggagacaa gcacaagtgc acacgagtcg atgactactt tgattttttt taagaatgga       540
     tgacgttttt aaaaattaca aattaattga actctatgta agctcatgtc aacgttaagt       600
     gaataatata ataaaaaaat aataataaat aataataata aacatatatt gcagcgatgg       660
     aatttgaaat gagaccattg cccccgttcc gttgtgaaca aatagagaga tcgaagctaa       720
     gccgagagtg gaggtcgtgg agaaacgcgc ttgaatgtta tttcgaagcg cattccattt       780
     ttgaccaaag aataaaacga gcaaaacttt tatttcttgg tggaccacaa ctccagaggg       840
     tgtttgagca tcttgctgac acggataaaa ttccgttggt agccgtaaag gaaacgtggt       900
     acgacgttgc gattgaaaaa ttgaacgagt attttcaacc agctcgtcaa catactttag       960
     aaagacatcg tcttcgtgag atgaaacaaa tgaaagatga acgtttcgct caatttgtaa      1020
     tgcgcttgaa gcagcagtct gcggattgtg gctttgacaa gtactcaaca gaaatctcca      1080
     agattctgac cgagattact ttgatagatg taatagtcca aggatgtacg tcgaatgagt      1140
     tacgtcgtcg tatattgaaa gaagaccatt ctttggctga gatcgaagcc cttggggcga      1200
     tgtttgaatg cgtagatgag caggtgaaga gtctgagtaa cgttaccgca aatacgcaag      1260
     aaaagatttt taaagtgacc gaaagcaaaa aggttgagga taaacccgat acaaatggcc      1320
     aactgtcgtg ttatcggtgt ggaaacacag ggcatttttc gaaatctcct aattgccctg      1380
     cccggaataa aacatgcaga cgatgtaaac gtattggcca tttcgaatca gtatgccgtg      1440
     gattctcgaa acgaccagca cagaaactga atgacaatat aacagcgaaa aaggttcgag      1500
     ccattgagac cgttgacagc gagactgagt tgatgttacc aggtaaagat tccaagaagg      1560
     atgaacagac tccatcgaaa acatactatg ctttttacac gggtaacgaa acgaacatga      1620
     ttgagtgcca cattggagga attaaatgga aagtgatcat tgattctggg tcagaatgca      1680
     atttgatcac taagaatgcg tgggaaaaaa tgaagacttg caacatcgcg gtacagtcat      1740
     ctacgaaggg ttgcgatcgg gtattgaaag catatggtag taatgtacca ttaaaggtaa      1800
     acttcaaaat taggattaga tatgattgta ctatttctat aatcaataca tttatgtttt      1860
     atataggttg ttggttcatt cacggctgaa gtgcgaatta acgaacgaca tgtggttgct      1920
     gaattcattg ttgtggatgg tggccagcag tgcttgctag gtgatacaac ttcaaaagag      1980
     ctcggtgttc taaaggtagg tctggacatc aacaatgttg aagagttgaa gccgttcaac      2040
     aagattatcg gattacaagt acaaattcat atggatacat cgatcaaacc ggtatttcaa      2100
     ccactgcgca aagtacctgt tcctcttgaa gctgctgtga acaaaaagct ggagcaacta      2160
     cttcaaaggg acataattga ggtaaagact ggaacaacgc agtgggtgtc acccatggtc      2220
     gaggggggcg acacatccaa atcaccgatt agatgcactt ttggataaaa ttagattttt      2280
     tagatcagtg tatcattcta gattttgacg tgcttcatgt gctgacatct tctgctaaac      2340
     gatgcgcgta gattgatgag atgcatgaag atgtgaatgg gtggaaggag aatcaatgat      2400
     gatgtagatt atggtgtgca tagtgctaca gtttttctgt aaacagtttt gatttattta      2460
     tgcttttaat tttcattatt tttgctttaa ttacttatgt tacttgaatt caattgcaat      2520
     acaagttaac tgggtgaaaa gatagtggaa aactgtgagc ctgtgtgtaa aaatttagta      2580
     aatggtaact atttgctacc agaattgcac gtaagaggct taattctggg aaatcttaag      2640
     aaaactattt ttgtttgtat ataggtaatt tttctttaca tgcgagaaaa cgcgttactt      2700
     atacaaatcc gtcgactatg attacggcac tggattccgg cttccagaag gggtaggtaa      2760
     atgtatactg ttgctatcta caatttcact aatcatcatt ctattattta aggagcagca      2820
     tattaaacaa cactgcagaa cgatattgtc cgtaaatgtg atagcccaat cctcagcagg      2880
     aaacccgaaa atatgcgatt taatctatgg aatttccagc aatgagcttt gttaatgtaa      2940
     taatattatg attaatttaa aacccaattt aataaccaat aaaatatttc ggagttgtga      3000
     gtaagggcat atacagagaa accagggaca atttattaat tcacaacatg ccccaacccc      3060
     ttccccccca ttgaaaaaaa taaactggtc aacgaacgcc aactgtgttc cgtccatctc      3120
     cacccacaaa gtactttgat caccgacatg atccagatca tcttttcctt cagccacatg      3180
     ccgcttctgg tcatcttccg tcaagtttga cagcaactct tgcacctggc gccgaagacg      3240
     atgcttctta tctcgaagta aatcaccgtt ttgatcatgc aggaaccgct tctgtcggaa      3300
     aacctggcca acacatccta tagacgactg ttctgcttct tgggcagtcc gtgtatcacg      3360
     cctccgttat tttatccgtc gtatccatcc tttccggcca catcacggaa ccgataatca      3420
     gcatcctgct gaatccgggc caatctccgg accactagca agcccaggag aacatctaaa      3480
     tggtgttgta gaaccggctg ggattggaat tcgcttgatg tttagacaca ttccaccgat      3540
     tatgcagctc cgtgcttcct ctttgttgtt gatcaacgac aactgagtca atccgctcat      3600
     gtaagacgcg caaagatgag ctagatttgt gaagatggat aaagatgttt tgcatgatac      3660
     cgcagatgaa acaagataat atactgcaag aagatgaatg gtcgtcgtaa agattttttc      3720
     aaaggtataa ggtaatctaa aatatctgga tgtgtcgtcc ccctcgccca tggtagtagt      3780
     tggcaaagca aatggcgaac cgagactttg tttggattta cgtagagtaa atgaagccgt      3840
     attacgcgaa cggtatccca tgcctgtcgt ggatgattac ttggctagaa tgggcaagaa      3900
     tatgattcgt agcaagcttg acattcgcga agcattcctt caagttgagc tagagccaaa      3960
     ctcacgagac atcaccacat tcatcaccag taaaggattg ttccggttta agaggatgcc      4020
     ttttggtttg gtttccgctc ctgaaacatt ccaaagagtg atggacgaga tattgactgg      4080
     ctgtgaagga gtatactggt atcttgatga tgtcatggtc gaaggtgcaa ccgtcgaaga      4140
     gcatgatgca cgactcaatg aggtataact tgatggaatt ttattaaatg cgattttatt      4200
     tgcattgcat ttgaatataa gtttgctgaa atagaaaaca ataatacatt atttttttta      4260
     ataataggtt ttaaatcgtt tcaagaatcg cggtgttcaa ttaaattggg aaaaatgcgt      4320
     ttttagggaa caagaacttg aattcctggg acatgtagtc tcacctgaag gaatttttcc      4380
     agtaaaatct aaaacagatg ccattcagac cttccgaatt ccaaagaacg aaactgaaat      4440
     taagagtttt cttggactag ctaattatat gaacaagttt atttataatt tggctaccat      4500
     tgatgaaccg ttgcgtaggt tgactttgaa gaaggtgcct tttgagtgga ctgaagaaca      4560
     tactaatgct tttgaaaaaa ttaagcaaga aatgagaata gctgggaaat tagggtattt      4620
     caacctaaac gaccgcacgg tggtgacaac tgatgcaagc ccggttggac ttggggctat      4680
     tcttgcgcaa tatgatgaca acgatcaaat acgtgtcata agctacgcgt ccaaatctct      4740
     gactgacaca gaggcaagat attgccaaac tgagaaagaa gcgcttgcgc tagtatgggc      4800
     tgtagagaaa tttcaaagat accttatagg gagatctttt gaattggtaa ccgactgtaa      4860
     agcattgcaa tatctattta ctaccagatc ccgcccttgt gcacgcatcg agcgatgggt      4920
     tttgcgccta caagcgtttg actataaagt tattcatgtt gctggtgaat gtaacgttgc      4980
     agatgcactg tcgcgtttgg ccactttaaa cccacttcct ttcgatcaaa acgaagaact      5040
     tatgattcga gaagtagcag tatctgcagc aaatgcaatg gctttagatt ggcagcaaat      5100
     agaagatgcc cctaaagaag atgaagaaat tcgtaatata atagcgcttc ttgattccaa      5160
     ccggcaacga gaactatctg ttccatatcg ggttatagcg aacgaattgt gccacattgg      5220
     agacgttctt atgcgagtag atagattagt tgttccctcg aaacttcgaa ctgtggtact      5280
     gaatctagcc catgatggtc atccgggcag ccgcatgatg aaaagccatt tgcgtagttc      5340
     agtatggtgg cctaagttag atcagcaagt tgaagagttt gtacgaaatt gtcgcggatg      5400
     ttgtttagta tctgcaccgg acgcacctga gccaatgata agaaaacccc taccatctag      5460
     accctgggag gatattgcgg tagatttcat gggtcctcta ccggaaggtc aatatttgtt      5520
     ggtagtagtg gattattact cacgattcat agaagtgaaa gagatgaata ctatttctgc      5580
     aaatgatacc atccaagagc taagtgtagt tttcagcaga tatggatttc cgaatacact      5640
     tagagctgac aacggacctc aacttagtga acactgtgaa gagctgaaac tattttgtcg      5700
     tgaaaatgga ataaagctag taaacacaat tccgtattgg ccgcagcaaa acggtgaggt      5760
     agagagacag aaccgttcta tattaaaaag gttgaaaata tctcaggaac taggcaaaga      5820
     ttggaagaaa gagctaagtc aatatctact ggtgtatcat tcaacaaatc attcgacaac      5880
     aggaaagtct ccggccgaac tgatgtttgg tagacgcatc cgaaacaaac tgcctcatgt      5940
     tccgatgtac cgtttggatg atgaagaagt tcgagaaaat gatttggttc aaaaagaaaa      6000
     aggaaaggag tatgctgatg gcaagagaaa ggcaaagcaa agcgaaattg tggtaggaga      6060
     tattgtgcta atgaaaagaa tgaaaagaac gaataagttg gatacagatt tctgtaagga      6120
     ggaatatatt gtaaaacgta gagaaggtag tgattgtacg gtagaatcta tggaatcagg      6180
     aaaacaatat agaaggaacg ttagtcatct caaacgagtg ggaaagaaaa cggaaagcaa      6240
     taatgttaca gaagcttctg aggaaaatgt agacttgcaa gtacaggatg ggaataataa      6300
     aacagacgaa atacagttag aattaaacga agatgaaaat caaaggacta ggaagaggat      6360
     tcgcatagaa ccgcatcatt tcaaagatta tattgcacac taatccgata aaaaagcaaa      6420
     agtgggat                                                               6428
//
ID   Gypsy-241_AA-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-241_AA_;
KW   Gypsy-241_AA-I; Gypsy-241_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-262
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1084-1084 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 262 BP; 72 A; 44 C; 65 G; 81 T; 0 other;
     tgtaggaact tgattatata atcataagaa taggtagatg ttttgttcca gtgtaattac        60
     gctcccgacc gttgctaggg gcaacgtgaa gaaaatagca tagtaggctg ttaaatgtgt       120
     aagagggatt cgagaaaaaa ccgttgtgta ataaagacgt gtttgagtgc agtgaaggtg       180
     gtgattcaat ttatttgacc aattcgtcgg ccgattctgt ttctccgtat ttctgctgtt       240
     ccgctccgga tacgacccta ca                                                262
//
ID   Gypsy-242_AA-I repbase;    DNA;    INV; 4381 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-242_AA_;
KW   Gypsy-242_AA-LTR; Gypsy-242_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4381
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1085-1085 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3269-3736] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..2262
FT                 /product="Gypsy-242_AA-I_1p"
FT                 /translation="MSDNDLKDAILRLTELIVQQQERITALERPDPTDGSE
FT                 KIIESLASGIQEFQFDPDDGLFFDAWYSRYEDVFKEDGKRLDDAAKVRLLL
FT                 RKLSTTVHERYVDSILPKHPREFSLDETVGKLKKLFGRRKSIFHARYQCLQ
FT                 YFKSEADDFTSYAAKINKHCEAFQLSKLSNDQFKALQFICGLQSPRDADIR
FT                 ARLISKLEAEESAPARPDGPSTITLENLVEECHRIVNLKHDTQMVENKDSK
FT                 TINAVTRNHKDSNPKKAKTPKTPCWKCGEMHYTRFCPFSSHTCTKCKQKGH
FT                 KEGYCSNDKTKPKPFHFKPKENLKTKGIFSIRNVESKRKFVTVELNGVPVK
FT                 LQHDSASDITVISEENWIKIGQPATRRTAEAAITASGDNLKLLAEFHTDIT
FT                 IGNVSKSGRIFISNNPELNVLGIETMDLFDLWSIPINSLVNAIQQRPEDFT
FT                 KQLKQKFPEVFKSTLGRCTKAKIKLYPKQDARPVYCPKRPVAYAALPKVEA
FT                 ELQRLQDKGIISPVQFSDWAAPIVVVRKADNVSVRVCGDYSTGLNDALESD
FT                 RHPLPHPDDLFAELSGARYFTHLDLSDAYLQVEVEESSRKLLTVNTHRGLF
FT                 QYNRLPPGVKSAPGAFQRIIDSMVAGIPGVKPYLDDILIAGKTKEEHDRSL
FT                 YAVLERIREYGFHLNLEKCKFAVSQIEFLGHIVDKDGIRPDPSKTLAISQM
FT                 PPPKDVQQLRSYLGAINYYGRFVKQMK"
FT   CDS           3050..4369
FT                 /product="Gypsy-242_AA-I_2p"
FT                 /translation="MFGDRIVIPEKFRKQVLRQLHKGHPGMDRMKSLARSY
FT                 IYWPNVDEDVEDFVRECRSCAQAAKAPTKTTLESWPVCTQPWQRVHIDYAG
FT                 PIGGYYYLVIVDAYSKWPEIFRTRNITATATLDILRETFARYGNPETLVSD
FT                 NGTQFTSEKFQQFVQENGIDHMRTAPYHPQSNGQAERFVDSLKRGLKKLSE
FT                 GESTPTLQHLQTFLFVYRNTPNKCSPQTKTPAELFLGRPARTTLDLLKKPV
FT                 RTPTSSNDQQNLQFNRRHGAIKREFQPGDLVYAEYHSNNKKSWIPGRIVER
FT                 KGSVNYNVFLHLGSREKLIRSHTNQLRERYEAKEPSVAQPVNLPWQILLQE
FT                 HQDYTHIETDDLEEETFPPGPDVVPVPEVSATTSANDDRLRCNTPELVHPE
FT                 AIAVAEPDEIQPDEATGQEPSVDTDVEPRPLRSKKLPAWLAPYDIF"
XX
SQ   Sequence 4381 BP; 1251 A; 1159 C; 1030 G; 931 T; 10 other;
     atattttggc gacgagaagt acgaaccgaa gtcaacctca agtctctcga cggaacatct        60
     atcgaagtac cgtaagaaga aatgtccgac aacgatctca aggacgctat tctacgtctg       120
     acggagctaa tcgtgcaaca gcaggagcgg attactgcac tggaacgacc cgatccaacc       180
     gacggaagtg agaaaatcat agaatcgctc gcctccggga ttcaagagtt ccagttcgat       240
     cctgacgacg gccttttctt tgatgcatgg tattctcgat acgaagatgt ttttaaagag       300
     gacggaaaac gcctggacga tgctgccaag gtgaggttgc ttctccgaaa actcagtacg       360
     acggtccatg agcgatacgt ggacagcatc cttccgaagc acccaaggga attcagccta       420
     gatgaaaccg ttggcaaact gaagaagctg ttcggacgtc ggaagtcaat tttccatgcg       480
     aggtaccagt gtttgcagta cttcaagagt gaagcagacg attttacctc gtatgcggcg       540
     aagattaaca aacactgcga agcgttccag ctgtcaaagc tatctaacga ccagttcaag       600
     gctctccagt tcatttgcgg cctgcaatca ccacgcgatg ccgatattcg tgccaggctg       660
     atctccaagc tagaagctga agaatcagcc ccggcgcggc cagatggtcc aagtactatc       720
     actttggaaa atctggtgga ggagtgtcat cgtattgtta acctgaagca cgatactcaa       780
     atggtcgaga acaaggatag caagaccatc aacgccgtca ctcggaacca taaagattca       840
     aacccgaaga aagccaagac ccccaagacg ccttgctgga aatgcggtga aatgcactac       900
     actcgctttt gcccgttctc cagtcacacc tgcaccaagt gcaagcagaa aggccacaaa       960
     gaagggtact gctcaaacga caaaaccaaa ccaaagccat tccacttcaa gccaaaggaa      1020
     aatctgaaga caaaaggaat tttctcaatc cggaacgtgg aaagcaagcg caaattcgtc      1080
     acagtggaac tcaacggagt accggtcaag cttcaacacg attcggcatc ggacatcaca      1140
     gtcatttcgg aagaaaactg gatcaaaata ggacaaccag cgactcggag aactgccgaa      1200
     gcagcaatca ccgcctctgg agataatctc aagcttctag cagaatttca caccgacatc      1260
     accatcggca acgtgagcaa gtcagggcgc attttcattt caaacaatcc tgaattgaac      1320
     gtgctgggaa ttgaaaccat ggacctgttc gatctttggt ccattccaat caacagtctt      1380
     gtcaatgcaa tccagcagcg tcctgaagat tttacaaagc agctcaagca gaagtttcca      1440
     gaagtgttca agagtacgct gggccgatgc acgaaagcga aaattaagct gtacccgaag      1500
     caagacgctc gtccggtgta ctgtccgaag cgaccggtgg cctacgcggc acttccgaag      1560
     gtggaagcag aactccagcg gctccaggac aaaggtataa tttctccagt gcaattctcg      1620
     gactgggcgg caccgatagt cgtcgtacgg aaggcggata acgtctctgt ccgtgtgtgc      1680
     ggtgactatt ccactggctt gaacgacgct ctcgaatctg accggcaccc tcttccgcat      1740
     cctgatgatc tgttcgctga actatccgga gcacggtatt tcacccacct ggacttgtcm      1800
     gatgcctatc tgcaagtcga agtggaggaa tcatcaagaa aactgcttac ggttaacaca      1860
     catcgtggct tgttccagta taaccgcctg ccgccaggag tcaagtcagc cccaggagct      1920
     ttccaacgca tcatcgacag catggttgcc ggcatacctg gagtgaagcc ttacctggac      1980
     gatattctca tcgctggcaa gaccaaggag gaacacgacc gtagcctgta tgctgtcctt      2040
     gagcgaattc gtgaatatgg ctttcacctc aacctcgaaa aatgcaagtt cgccgtttcc      2100
     cagatcgagt tcctcgggca catagtggac aaagacggta ttcgcccaga tccatcgaag      2160
     acgttagcga tttcccagat gccaccaccg aaggacgttc agcagctccg ttcttacctg      2220
     ggagctatca actattacgg acgattcgts aagcagatga agmagctacg ggcacccctc      2280
     gacaatctgc tcaagaagga cgcccgctgg aattggacat ccgagtgcca acaatcattc      2340
     gacaaattca aggccattct ctgctcgaat ctgctcctga cccacttcga cccagccaag      2400
     gagatcattg tcgcggcgga cgcatccaag tatggacttg gggccgtaat catgcaccgt      2460
     ttcccgaccg gcgaggtcaa ggctatcgca catgcatcaa gatctctgac gtcagcagaa      2520
     gccaactacg gacagataga gaaagaagca ctcgccctgg tttttggagt cactcgtttt      2580
     cacaaaatgc tstacggacg cagattcatc ctccagacgg accatcagcc gctgatcaag      2640
     gttttcggat ccaagaaggg gatwccggtg tatactgcca acagactgca acgttgggcc      2700
     ctsactctgc tcctgtacga cttcgacatc magcacattt cgactgacaa gttcggttgc      2760
     gcagatgtcc tgtcaagact gatgtccacc aaacccgacc agatgaagat tacgttctcg      2820
     ctgcmgtgca cgtggaaacc gaagtcaaag ctgttctcgc agacacggtg agcaaactcc      2880
     ccgtgacgct cmagatgata gttgctgaaa cgcggaaaga tcaagttcts cagcaagtta      2940
     tgcaattcct gaaagaaggt tggcccgtaa gtagtaagaa gattacgacc ctgctgtgag      3000
     aaaattcaac gcccgacgcg atggattgca gatagtcgac aactgtttga tgtttggtga      3060
     ccgcatcgtc attccagaaa agtttcgcaa gcaagtactt cgtcagctcc acaagggaca      3120
     ccctggcatg gaccgaatga aatcactggc aagaagctac atttactggc caaacgttga      3180
     cgaggacgtt gaagactttg ttcgtgagtg cagatcctgt gctcaagcag cgaaggctcc      3240
     gacgaagact actctggaat cctggcccgt gtgcacccaa ccatggcaac gtgtacacat      3300
     agattacgca ggtccaatcg gcggatacta ttacttggtt atagtggacg catattccaa      3360
     gtggccagaa atttttcgaa ctcgtaacat aaccgcaact gcaacgttgg atatactacg      3420
     tgaaaccttc gctcgctacg ggaatccgga aaccctagtc tcggataacg gaacccaatt      3480
     cactagcgaa aaattccagc agttcgtcca agagaacgga atcgatcaca tgcgtactgc      3540
     tccataccat ccccaatcga atggtcaagc agagcgtttt gtcgattctc tcaagcgcgg      3600
     actcaagaag ttaagtgaag gggaatctac gccaacacta cagcatcttc aaaccttcct      3660
     gtttgtatac cgcaatacac cgaataagtg cagtccgcag acgaagactc cagcagaact      3720
     gtttcttggt agaccagccc ggacgacttt ggacctcttg aagaagcccg ttcgaacacc      3780
     tacgagcagt aatgatcaac agaatctgca gttcaacaga agacacggtg ctatcaaacg      3840
     tgagtttcaa cctggagatc tggtgtacgc cgagtaccac agcaacaaca agaaatcctg      3900
     gattcctgga cggattgtag agcggaaagg ttcagtcaac tacaacgtgt tcctgcacct      3960
     cggatcccgt gagaagctta tacggtcaca cactaatcag ctacgtgaac gatatgaagc      4020
     caaagaacca tccgttgctc aaccagttaa tcttccatgg caaatcctcc tacaagaaca      4080
     tcaagattac acccatatcg aaacagatga cctagaagaa gaaaccttcc ctcctggacc      4140
     cgatgtcgta ccagttcctg aagtttcagc aaccacttca gcaaatgatg accgcttacg      4200
     atgtaataca cctgaactgg tccaccctga agcgatagct gttgccgaac ctgatgagat      4260
     ccaaccagat gaagcgactg gacaagagcc atccgttgat accgatgttg aaccacgacc      4320
     gcttcgctcc aagaagttgc cagcttggtt ggccccatac gacatattct aaaaggggag      4380
     a                                                                      4381
//
ID   Gypsy-242_AA-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-242_AA_;
KW   Gypsy-242_AA-I; Gypsy-242_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-148
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1086-1086 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 148 BP; 43 A; 32 C; 22 G; 51 T; 0 other;
     tgtagcagag cagtaggctt tgctaacctt atgtcattat gttaaattct gttctttgat        60
     tattatcagt tagacctcca aagaagaagc acacaaatat actttgttcc ttacaaatac       120
     ctcgtcttcc ttcaatccgg agtctaca                                          148
//
ID   Gypsy-243_AA-I repbase;    DNA;    INV; 7384 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   02-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-243_AA_;
KW   Gypsy-243_AA-LTR; Gypsy-243_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7384
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1087-1087 (2011).
XX
RN   [2]
RP   1-7384
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   [2]: sequence updaed.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(444..2543,2486..5806)
FT                 /product="Gypsy-243_AA-I_1p"
FT                 /translation="MSGQYVLPVADHLLEEEVDFDLKLRGQVVDRRETLED
FT                 KRRFLRRLFFEEKKSKSVLIGKHNLSDEVLRIDKSVKVIVSNLSKKFDLAL
FT                 VSRLRHYFIRTQTAIVDNESEKHKQATICGEIEEFLKSLNQKVYMEANEGE
FT                 TETDKESRTTDGGDGRDRTDDSEVDRMRKEEYEKQKEIRGSEQMEKEKKKQ
FT                 ERKVSHQDEVEKQKELEEEWKEFQIWKQAKLYDEARNKLLEKRENLEKGPP
FT                 KCYKSPNSRRYSRDEESQSESDNRGPPKSYKSLKSSRERSKDRNNKSKSDR
FT                 WPPESFKSRKSHGDVRDEKEYVRRSGKRPPESDKSRSSRRSKSFDKKNRRN
FT                 GYSSESSINRSKDRKSKGRSRQRSSSSSGSEYDSGEKYENERKRSDRRQRR
FT                 YSSSSPDYGRRHYGKSRVESWDLNFSGDSRSIQVEDFLNRVQKLARHEGVS
FT                 KSELLMNIHKRLKGEAYDWWFTRESHLTSWRRFENEIRFRYANPNRDRGIR
FT                 AQIRELKQKKGETFIAFVTEVEKLNQCLQRPFSSRTLFELIWENMRPHYRS
FT                 RLSVVDVEDLEDLIEINHKIDANDPSFFRTQEGRRELHQLGVEDSANEYSE
FT                 DEPNVPSVKVNRPERIKTGPRRNELGTQHQRISSSQQQNSRLATGFLCWNC
FT                 RGSGHIWKECREPKQLFCYACGNPGRTTRNCERNHVPLSQRNSQNTVRPTN
FT                 TEPCSTFPAKFAKHGPSNKLIAGCLQGNPTTSLFEGIPKKHNTVLEIRVNP
FT                 SACPHVKVNILGTEVVALLDSGAGASVMSALDIVKSHGLKILNSNIKVCTA
FT                 DDTQHTCLGYVNIPYTLGTETKVVPTLIVPEIRKPLILGMDFWRAFQIRPM
FT                 ITSQNGIKDLELTWTSSLTENTIHYLRIEPGQSSIGEETISLSVQLVSPLE
FT                 PXEIFTAKPEEDSSLDVPTLDLPDDPEKAIETVETEHALTAEERRKLQKAL
FT                 KHFSCTSSGNLGRTTLIEHEIELVSEGKMRDLPMYRYSPKIWEKIEEELER
FT                 WKSLKVIEECNSEFASPLVPVKKANGKIRVCLDSRRINSVTRKDAYPMRNM
FT                 AEIFHRLQKAKYFSIVDLKDAYFQIPLKESSRNFTAFRTPKGLFRFKVVPF
FT                 GLKNAPFTMNRLMNLAIGFDLEPFVFVYLDDIIIATETLDEHFRLLKEVAL
FT                 RLKKAGLTISVEKSRFCRKQVKYLGYLLTEKGLSIDSAKLEPILNYPRPKT
FT                 IRDVRRLMGLMGFYQKFIPRYSHLTAPITDLLKKSKKFRWSEDAEKALEGL
FT                 KSVLTSAPVLANPDYSRPFIIETDASQLAVGAALLQEFDDGKRIIGYYSKK
FT                 LSSTQRKYAATEKECLAVLMAVENFRHYIEGTTFTVITDCKSITWLFSITA
FT                 ASANSRLLRWALKLQSYDFVLRYRKGKDNILADCLSRIEALKIIDKDYSQI
FT                 VDDILKSPHDYKNFKVAGNKIYKYVEEPGKLKDKRFDWKYFPPKAERLSLI
FT                 ESVHNTAHLGYEKTLSALKEKYFWPKMSKEVKEYCKSCLACKTSKGINVNP
FT                 TPTMGSQKKYCDYPWQFLTLDYVGPFPTSGKGRCTCLLVVTDVFSKFIMVQ
FT                 PFRQATASSLVLFLEQTVFLLFGVPEIILTDNGSQFTSKEFASLLRQYGVK
FT                 HWLTPSYHPQVNNTERVNKVVTTAIRATLRGNHKHWTDNLQQIACAIRNSV
FT                 HDSTKYSPYFVTFGRNMISNGAEYERMRNSNGIANSALNDNERKELYKTIR
FT                 KNLAEAYEKQAKYYNLRSNKRAPTYQVGEKVLKKNTVLSNKSKDFCAKLDA
FT                 KYVVAYVNRVLGDSYELIDEKGNSLGIFHASFLKKF"
XX
SQ   Sequence 7384 BP; 2383 A; 1238 C; 1704 G; 2056 T; 3 other;
     gtggcgccca acgtcaaaag tttacgaaac ttaaattcaa ttgaattaat tttgaatagt        60
     ttcagttaat cttgagtgct tttatttgga ttaagtgaaa ttgaattgaa ttttgaaatt       120
     gttttaactt taactttcta gtgtttaagg tttgaattcg cttaagttaa tttgaattga       180
     atttttgatt tttaattttt agttttattt tttttaatac attgaatttt ggatttgata       240
     ggttaagtaa ttatagtatt tttttctttt tatttttgaa ttgaattgaa tttttagaag       300
     ttgcctccgt gcttgaattt gatttttcta ggataaaaga atagttaact ctctattttt       360
     tagactgaat tttgaattga attatttttt ttwaattgaa tttataatat tttgtcacgt       420
     ctttgagttc tgaagaattc gagatgagtg gacagtatgt tctgccggtg gcagaccatt       480
     tgttagaaga agaggttgat tttgatctaa agttgcgtgg acaagtggtt gaccgcaggg       540
     agaccttaga agataaaaga agatttctgc gtagattatt ttttgaagag aagaaatcta       600
     aatcggtttt gatcgggaaa cacaacttaa gcgatgaggt tttgcggatc gacaaaagcg       660
     taaaagtgat cgtgtcgaat ttgagcaaga agtttgatct cgcgttggtt tcgcgtctgc       720
     gacattattt tattcggaca caaaccgcga tagttgacaa cgaatcagaa aagcataagc       780
     aggcaactat ttgtggggag attgaagaat ttttgaaaag cctaaatcag aaagtttata       840
     tggaagctaa tgaaggagaa acagaaacgg ataaagaaag tagaactact gatggaggag       900
     atggaagaga tagaacagat gatagtgagg tggacagaat gagaaaggaa gaatacgaga       960
     agcagaaaga gattagggga agtgagcaaa tggaaaaaga gaagaaaaag caagagagaa      1020
     aggtatcaca tcaggatgaa gttgaaaagc agaaggaatt agaagaagaa tggaaggagt      1080
     ttcagatatg gaagcaagcc aaactttatg atgaggctag aaataaactt ttagaaaaga      1140
     gagagaactt ggagaagggg ccgccgaagt gctataagag tccgaattct cgcaggtatt      1200
     cgagggatga agaaagtcag agtgaatcag ataatcgagg gccgccgaag agctataaga      1260
     gcctaaaatc gtccagggaa cgtagcaaag acaggaataa caaatccaag agcgacagat      1320
     ggccgccgga gagctttaag agccggaagt cccatggaga tgtcagagat gagaaagaat      1380
     acgtgaggag aagcggtaaa cggccgccgg agagcgataa gagccgatca tcgcgaagaa      1440
     gtaaaagttt cgataaaaaa aatagaagaa acggatatag ttcggaaagc agtataaata      1500
     ggtctaagga caggaaatcg aaaggtagat caagacaaag aagtagcagt agttcaggga      1560
     gtgaatacga ttctggggaa aaatatgaaa atgaaagaaa acgttccgat aggaggcaaa      1620
     gaagatattc gtcatcgagt cctgattatg gcagaagaca ttatggaaaa tcgcgtgttg      1680
     agagctggga tttgaatttt tccggagata gtagaagcat tcaagtagaa gatttcttga      1740
     acagagtcca aaagttagcg agacatgaag gagtttcaaa gagtgaactt ttgatgaaca      1800
     ttcacaaaag gctaaaggga gaagcttacg actggtggtt caccagggaa agccacttga      1860
     ctagttggag aaggttcgag aatgaaatac ggtttcgata tgcaaatccc aatagagaca      1920
     gaggaattcg ggcgcaaatc agagaactga agcagaagaa gggcgaaacg tttatcgcat      1980
     ttgtgacaga ggttgagaag ctgaaccaat gtctacagcg acctttttca tctagaacgc      2040
     tttttgagct gatttgggaa aatatgcgcc cacattatcg ctcgaggctt tcggttgtgg      2100
     acgttgaaga tcttgaggac ctaattgaga tcaaccataa gattgatgcc aacgatccaa      2160
     gtttcttcag gactcaggag ggtagaagag aacttcacca gttgggagtc gaagattcag      2220
     ccaatgagta ctcagaagat gaaccaaacg ttccttctgt gaaagtaaat cggcctgaaa      2280
     gaataaagac aggacctagg aggaatgaac taggaacaca acatcagcga attagcagta      2340
     gccagcaaca gaattctagg ttggctacag gatttttgtg ttggaactgc agagggtcag      2400
     gacatatatg gaaggaatgt agggaaccaa aacaactatt ttgttatgcc tgtgggaatc      2460
     caggacggac gaccagaaat tgtgaacgga accatgttcc actttcccag cgaaattcgc      2520
     aaaacacggt ccgtccaaca aactaattgc ggggtgcttg caagggaatc caaccacctc      2580
     gctatttgaa ggaattccca agaagcataa cacggttctg gaaataagag tgaaccctag      2640
     tgcgtgtcca catgttaaag ttaacattct tgggacagag gttgttgcac tgctcgactc      2700
     aggagcaggt gctagtgtaa tgagcgcact agatattgta aaatcccatg gattgaaaat      2760
     tttgaactct aatattaaag tttgcactgc agatgacact cagcatacgt gcttaggcta      2820
     tgtgaatatt ccgtacacct tagggactga gacaaaagtc gtcccaacgt tgattgttcc      2880
     agaaattagg aaacctttga ttttagggat ggatttctgg agagcattcc aaattcgtcc      2940
     aatgattaca tctcagaatg gaattaagga cttagaactc acgtggacat caagcttgac      3000
     agaaaataca atacattact tgagaattga gccaggtcag tcgtctattg gtgaggaaac      3060
     aatttctctt tcggttcagc tggttagtcc tttggagccg gawgaaatat tcacggctaa      3120
     accagaggag gactcgtctt tggatgttcc aaccttggat ttacctgacg atccagagaa      3180
     agcgattgaa actgtggaaa ccgagcacgc attaacggca gaggaacgcc ggaaactaca      3240
     gaaagcctta aaacatttca gttgtaccag ttcggggaat ttaggtagga ctacgcttat      3300
     cgagcatgag atagaactgg tttccgaagg aaagatgaga gatctcccga tgtatcgtta      3360
     ctcgccaaaa atttgggaga aaattgagga ggaattggaa agatggaaaa gcttaaaggt      3420
     gatagaagaa tgcaactcgg agtttgctag tccacttgtg ccagtgaaga aggcaaatgg      3480
     caaaattcgc gtttgtcttg attcacgaag aatcaattca gtcacgagaa aggacgcata      3540
     tcccatgaga aatatggctg aaatatttca cagattgcag aaagcaaagt atttcagcat      3600
     cgtggattta aaagatgcat attttcaaat tccgttgaag gaatcttcaa ggaactttac      3660
     cgcgtttaga acccctaagg gtctattcag attcaaggtg gttccttttg gtttgaaaaa      3720
     tgctcctttc acaatgaatc gattgatgaa tctggctatt ggatttgatt tggagccgtt      3780
     cgtatttgta tatcttgacg atataataat agctacagaa actctcgacg agcatttccg      3840
     cctgctaaag gaagtggcac ttcgtcttaa gaaggcaggt ctgacgatat cggttgaaaa      3900
     aagccgattc tgtagaaagc aagttaagta tctagggtac ttgttaacag aaaagggtct      3960
     atcaatcgat agtgctaaat tagagcctat cctcaattat cctcgtccaa aaaccatcag      4020
     agatgtaaga aggttgatgg gtctaatggg cttctaccag aaatttatac caaggtacag      4080
     ccatttgact gccccaatca cagatttact taagaaatct aagaaattta gatggtcaga      4140
     agatgcggag aaggcgttag aagggcttaa atcggttttg acttcagctc cagttttggc      4200
     aaatcccgat tattcccgtc cctttattat agagacagat gcttcacaat tggcagtcgg      4260
     agcagcgtta ttgcaagagt ttgatgacgg taaacgtatt attggatact acagtaagaa      4320
     actgtcaagc actcaaagga aatatgcagc tactgagaag gagtgcttag ccgttcttat      4380
     ggctgttgag aatttcaggc attatataga gggaacaaca tttactgtga ttaccgactg      4440
     caaaagcata acttggctgt tttcaatcac agctgcaagc gctaattcgc gattattacg      4500
     ttgggctctc aaattgcagt cttacgattt tgtgctaaga tacaggaaag gaaaagataa      4560
     cattttagct gactgtttgt cacgtataga agcattaaaa attattgaca aagattactc      4620
     gcaaatagtt gacgatattt taaaaagtcc tcacgactac aagaatttta aagttgcggg      4680
     taataagatt tataagtatg tagaggaacc tggaaagctg aaagacaaac gtttcgactg      4740
     gaaatatttt ccaccaaagg cagagcgctt atcactgatc gagtcagtcc ataatacggc      4800
     acatttggga tatgaaaaga ctctcagtgc gcttaaagaa aaatatttct ggccaaaaat      4860
     gtccaaagaa gtaaaggagt actgtaagag ctgtttagcc tgtaaaacat caaagggaat      4920
     aaatgtgaac ccaaccccaa caatgggatc tcagaaaaaa tactgcgatt acccatggca      4980
     gttcttaacc ctagactatg ttggcccttt tcccacttca gggaagggaa gatgcacctg      5040
     tttacttgta gtaacagatg tgttctctaa gttcatcatg gtccaaccat ttaggcaggc      5100
     cacggcttca tcattagtac tgtttttaga acagaccgta tttttgcttt ttggagtacc      5160
     ggagattata ttgacagata acggtagtca atttacctca aaagagtttg cctcacttct      5220
     caggcaatac ggggtgaagc attggctgac accctcatac cacccacaag tcaataacac      5280
     cgagagggtg aataaagtag tcaccacagc aataagggct acgcttcgag gcaatcacaa      5340
     acattggacc gacaatttgc agcaaatagc ttgtgcaatt aggaattcgg tccacgattc      5400
     taccaaatat tccccatatt tcgtaacatt tggtagaaat atgatttcaa atggagctga      5460
     gtatgagaga atgagaaatt cgaatggaat tgcaaattca gctctcaacg ataatgaacg      5520
     gaaagaatta tacaaaacaa ttaggaaaaa tttagccgaa gcttatgaaa aacaagcaaa      5580
     atattataat ttacgttcaa ataaacgcgc acccacttac caagtaggag aaaaggtgct      5640
     aaagaaaaat acagttttat ctaacaaatc aaaagatttc tgtgcaaaac ttgatgcaaa      5700
     atatgttgta gcatatgtaa atagagtttt aggtgatagt tatgaactca tagatgagaa      5760
     aggcaattcc ttaggcatat ttcatgccag ttttttaaag aaattctagt caattcgaga      5820
     acgagctatg acattttccc gttagggaaa atgtacaaaa atcatcacta ggatgaaaga      5880
     aaaatgcgwc gcataaatgg attggttagc gaaaattctc ttacctaatg ttagtttaca      5940
     atctgaccta gccttacaat gtttgcaaat ctacttaaat ctatattagt tttaatccta      6000
     ggttagtaga aagataattg gaactgactc acccgttgat ctggtccact aatgcggtgg      6060
     attcatggcc atgggttcac tccctcgccg taaggaatag gtttcttgat gttccggacg      6120
     cgtccctata gtcggtcgtc gttgagattt gtagtccaat ccggtacaag aagttcactc      6180
     gtcgataggc aacacctccg ttcaattttt gttggataag tccgattatt tgtcagctgt      6240
     agctcctaca cataaacgca gcagaaatac cagagtcctt cgattccaac gtagtgccag      6300
     gaaattgccg gtgtcaggaa cactgtagtc gtcgttcgga gacgtttcag gatccggttt      6360
     ttgttggatg cagttcctcg catcaaaaat gtctgaatcg cgtccataag tcaaaccaac      6420
     tccgttagcg atagttatgt gtttagacga caccgcgtgt aaatccttcc acgtagtttt      6480
     tctttttcaa aaagttttcc cgaccggtgt cggtattgga taatcccacg acgagtttcc      6540
     tgaaaataac gaagaaaaga ttaatctaat gcataattag tataattacc tcatactccc      6600
     ccggtttatc gacgattaaa gatgtttttc tccggtccca cgacgtcctc cagcagcttg      6660
     tccgacactt tctaacagga aactgaactt tgtgttcgtt ttcctgttgt tttcgttctt      6720
     gtttatcatt gacactgaca gtgcgatgtt tttcttcgca gatgtcactc gcagtgacag      6780
     cgcgatgttt ttcgcagttg tcagtgagcg cttgacaggc agtgagttgc atgcaagttc      6840
     atatgctgtc agtttcgttt gaacgcaaat agggttgcgc gctatgccgt gtatgaattc      6900
     tagactggtc agaaagaatt tctgattcta gaattcagtt tttagtttcg tttgtacgga      6960
     tgtcaaatta ctgagtcaga cgaagtgttc tgatgaattt gattatccag gttttaattt      7020
     tcgtttacag atatcagtag taagagtcag acgaagcgtt ctgatagtaa ctgattatct      7080
     agttttgagt ttgtgttgac tgcggttggg tcaaatacga tttgatgatg cagttaacca      7140
     gtttagttag agtaacgatt ggcgtaattg atggacaagt tccattgtgc tgatcgtaag      7200
     atgcagttta gctgagttag tggtagtaag cgctctgttt gtgatcctag aaactggtga      7260
     gatgattatt aatgttcaac tgcaggaggt aatttctatt aatgttttca cgtagatcat      7320
     tttgaaagtt atgaaaattt gatcagtgcg cctgatcaaa ttttcataaa acctggtggt      7380
     gtga                                                                   7384
//
ID   Gypsy-243_AA-LTR repbase;    DNA;    INV; 1795 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   02-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-243_AA_;
KW   Gypsy-243_AA-LTR; Gypsy-243_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1795
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1088-1088 (2011).
XX
RN   [2]
RP   1-1795
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 1795 BP; 443 A; 386 C; 429 G; 537 T; 0 other;
     tgtaacgttt tgcgtttttc cgttaaaaac atgataaaaa agtttgtgaa cttttgacgt        60
     ttttatcttt ttaagcaaaa tcatctgaat ttgaatttga ttgagctcag tgttacgtat       120
     attgtcgata aggtttgtgt ctagactaag tgtactaaat tgacgtcacc cagtatggga       180
     tatgtgtagt gatgtgcaaa cctttgtagt gttcattttc gttttagcca tgttcgttta       240
     ccgaaggcac gaactctcgc catatcaaat tagtttgggc gcaatttttg aaagaatagg       300
     ctctttatgt gagcaggttt cttgtctgct ccaaagaagt agactcgttc atttcgcttc       360
     ttaaacggct ggagttcaga agttcgtagt tcaattttaa agttaattta tttaaagtgt       420
     gttagattcg ttgtaactaa aaggtattga aagtgattga agtgattttt cgtttgtact       480
     ttgttctaat tttgttctat ttgtttgttc tataaggtag tgaaacgttt cggagtcggt       540
     gtgtccgaca aacgcgaact gttctgttaa atttataatt gtgactcaaa aaggtaattt       600
     caatgtactc gattttctaa attcagtttt taaaataaat ttcgcgttgg actttctagc       660
     gccctgcgct ttttgggtac aggctggagt ttttcgagtg tcgaccgaag tcgaatacgg       720
     tccccgtggc gtttcgggcc accatttccg tccgaggacg ttgtttcgag tccgtgcaac       780
     caccaaggcc cgcccttcgg ggtagtcaaa cggagcgtgg tgtttcgcct ttcaaaaagg       840
     agcgaaaatt ccccgacgat cgccaattaa tcgtcgtaga cggtccacca acgttacaac       900
     cccggaccaa gctaaacgag agtgcggatc gtgaactgcg tcgccaattg cgcatcacgt       960
     tccggatcag aaccttaggg gaggagttca tttcatcacg tacggtcaga gcgccatacg      1020
     cgaggccgta cggaggtacg ttggctctaa accgaaggaa gaagatcaac cccgggtcgc      1080
     acgacactcc gtcgtagcca aagctctctg gagaaaatcg gaggccatcc gtccagccgc      1140
     cacccgcttc gcaactttag ttcggccata tttgcacggg ctcatcgcgc tgcacgccat      1200
     tcctgcagcg acggcgaaac gatccccttc gccgccatcg ttacgaaggt tctcgccgcc      1260
     atcgccgagg ttcctggctg tttcgagtcg tcgccgagat tcaacaagtc gacgaagaaa      1320
     aaccctgcgc aggtatgtgg tagttgtaga catggccatg ctctaaagtg tttccccaat      1380
     ccaaacccaa cccaaaccgt ccaacccgaa accgaataaa tcgtggaatt tgtaattaat      1440
     agaaaatcga gtagttttgg tttagttgag ttccgtttag tgcaattgtg aggaaggtca      1500
     cttcaattgc gagttttgtt tcaggttgct gcttcgattt tcattaagag gtttttaagt      1560
     tcttcagttc agtgggttga acgagtctaa ggcggaattg agcgtgttgt gggagatatt      1620
     tcagctttca gagattgcgc ttctttgttt caaatttgag ccagcgaccg ttcgagtacc      1680
     cctgaggtaa aagtcgaaat agtcgggcaa atcaaatcga ccggcggtct ctcctatcgc      1740
     gagagtggcg cttaaatcgc cggttaacta tcctcgaatt tgtcgaacgg ttaca           1795
//
ID   Gypsy-244_AA-I repbase;    DNA;    INV; 4788 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-244_AA_;
KW   Gypsy-244_AA-LTR; Gypsy-244_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4788
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1089-1089 (2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..4756
FT                 /product="Gypsy-244_AA-I_1p"
FT                 /translation="MKFVEHIFKCSYLQLKENNGNATKLNLIHFTFFSKLI
FT                 EMDKWDLAPFSYKLMPQNEIRDEWQRYKRNFEYLALANGMTNKTRLKNIFL
FT                 ARAGPDVQDVFKTLPGADVEERMGIDPFKIMLDKLDEYFAPKQHEAYQRFL
FT                 FWSMTRNDKDEPLDKFILRATDAAGKCNFGQSKKEAQEISVIDKIIQLAPP
FT                 DLREKLLQRENLVLDEVIKLVNSHEAIKFQANQMTSSNACQPSTSGGVNKI
FT                 RNTTKSVFQGVPDGCSRCGRKGHYGNDKVCPARTKTCDRCGRLGHFAIRCH
FT                 SSKPIQKNKREGKDDLYRKRFRFQPQQIRAIEDDVDEKGITSSFIFAVGEA
FT                 DEYLWIAIGGVLVQILIDSGSQKNILDDVTWEKMKAQRVNVKNLRSNSDQT
FT                 FKAYGRSAKPLVVRHVFESTIEILGGNQRICKDATFYVIEGGSQPLLGKVT
FT                 ALELGVLSLGLPSTQSDEVYRLHTERKRPFPKMKGIKLNIPIDTTVTPVIQ
FT                 HARRPPLALMDKIEEKLDYLLASDIIEPVYDFSQWASPLVTIIKENGDLRL
FT                 CVDMRRANLAIKREAHLMPTFEDFLPRLKNAKMFSRLDIKDAFHQVELNEP
FT                 SRYITTFITHRGMYRYKRLMFGISCAPEMFQKVLEQILSDCENVISFIDDV
FT                 LVFGNTPEEHDRALQKVLDTLESKNILLNHAKCVFRVTELDFLGHHLSGKG
FT                 VRPTEEKIAALKSFRAPQTAEELRSFLGLVTYVGKFLPDLATVCASLRELT
FT                 HKGTTFKWLPYHEKAFQKLKEMIADIKMLRFFDNSLRTRVIADASPVGLGA
FT                 VLVQFSDTSNDLDPRVISYASKSLSPAEKRYCQTEKEALALVWAVERFSIY
FT                 LIGRKFELETDHKPLEAIFSTTSRPCARIERWVLRLQSFNFEVRYRKGVNN
FT                 IADPFSRLATLSSEDAFDGDNQFLVLAILESAAIDTVELENASLEDEELSI
FT                 VKSCLQRGTWDSDKVKSYEMIQSELGVVGDMLVRGNKLVVPKVLRKRMLTL
FT                 AHEGHPGETVMKRRLRDRVWWPGMDREVTAHVSACQGCRLVSLPNKPEPMH
FT                 RRELPVRPWLDVALDFLGPLPSGEYLLVIIDYYSRYKEVEIMKHITAEETI
FT                 ARLRKIFTRLGLPVTITLDNARQFVSASFEDYCKQNGIMLNYSTPYWPQEN
FT                 GLVERQNRSLLKRLQISHSMGRDWKSDLQDYLLMYYTSPHSITGKTPTELC
FT                 YGRTIRSKIPSLIDFETVPSRAEITDRDKILKERSKESENAKRQAKLSDLE
FT                 VGDTVLMKNLTPGNKLMPNFNPSECVVVNKEGSRVTVRNKESSKVYQRNAA
FT                 HLKKVPSCTSVEEEVEDPPSCVDAEQTPTIQSETRNQMSSYNFSRVRRQTK
FT                 QPSYLKDFVIHEVSSE"
XX
SQ   Sequence 4788 BP; 1507 A; 894 C; 1109 G; 1278 T; 0 other;
     gtggcgacga ggatcggcgt tggaaacggt aagaagggtg gataattgtt atttatttac        60
     agttgaagca tctggaagat tgggccgaga aatttgaaga ggttatggaa acggcaattg       120
     atagcagtcc attgaaatga gtaaataatt ggaatggcgt attaaaatca tgaataaccg       180
     attcggttat ggtcccggag accgttttca taaaaaagtg gccggtgtac tacacggcat       240
     tgctcccgga gagcgtatgt aagaaaagtg gatgatgcat tgcatagtac tgctcccgga       300
     gagcgttcca taagttttag tgaatagtgc gttgcacagt atagctccat gggagcgcga       360
     aaaatgaacg gctggtgcat tgcacagcaa ggctcccgga gagcgtttca tataaacaac       420
     cgaaagtggt acagggtaca gtgttgctcc tagagaacgg ttcagaaaat gttgaattgt       480
     aaaacaattc taaatcgtgt acaccgttgt agtaatcaca gaactacatt gtcattgcag       540
     gacatcaaat cgacagaatc gacgaaatcg agattgtttg aggagcgcct cgaagcatta       600
     caggtaaaca aatgaacaga tgaaatttgt agagcatata ttcaaatgtt catatttgca       660
     attaaaggaa aacaatggaa atgcaactaa attgaatcta atccatttta cgttttttag       720
     caagttaatc gaaatggata agtgggacct ggcccctttc agttataaac tgatgcctca       780
     aaacgaaatt cgagatgaat ggcaacgata caagcggaat ttcgaatacc tagcattggc       840
     aaatggaatg acgaataaaa cacgtcttaa gaacatattc cttgcccgtg caggccccga       900
     cgtccaagat gtgttcaaaa cacttcctgg tgctgatgtg gaagagcgga tgggcattga       960
     tccgttcaag atcatgctgg acaaattgga cgaatatttt gctccgaaac aacacgaagc      1020
     ataccagcga tttttgttct ggtcgatgac ccgcaatgat aaagatgagc cgttggataa      1080
     gttcattttg cgagccacag atgccgcagg caagtgcaat ttcggacaga gtaagaaaga      1140
     agcgcaagaa ataagcgtta ttgataagat cattcagttg gcacctcctg atctacggga      1200
     gaaacttttg caaagggaaa atctggtttt ggacgaggtt atcaaattag ttaactccca      1260
     tgaagccatc aagttccaag caaatcagat gacgtcttcg aatgcttgcc aaccctctac      1320
     gtcaggtgga gtcaacaaaa tccggaatac cacaaaaagc gtctttcaag gagttcctga      1380
     tggatgttcg cgctgcggcc gaaaaggaca ctatggaaat gacaaggtgt gcccggccag      1440
     aacaaagaca tgtgaccgtt gtggaagact aggacatttt gctattcggt gccactcctc      1500
     caaaccgatt cagaagaaca agcgagaagg aaaggatgat ctttatcgga aacgtttccg      1560
     tttccaacca cagcagatca gagcgattga agatgatgta gatgagaaag gtattacttc      1620
     aagttttatt tttgctgttg gtgaagcaga tgagtatttg tggattgcta ttggtggggt      1680
     acttgttcag atcttgatcg attcaggaag tcagaaaaac attctcgacg atgtgacctg      1740
     ggaaaaaatg aaggctcaaa gagtgaatgt taagaactta cggtcaaact ctgaccaaac      1800
     tttcaaagca tatgggagga gtgcaaagcc tctagtggtt cgacacgtgt ttgaaagtac      1860
     cattgaaatt ctcggaggaa accagcgtat ttgtaaagat gcaacctttt acgtgataga      1920
     aggaggatcg caaccactcc tggggaaagt aacagctttg gaactaggcg ttttgtcatt      1980
     gggtttgcct agtacccaat ctgatgaagt ttaccgtttg catactgaac ggaaaagacc      2040
     ttttcctaaa atgaaaggta taaaactgaa tattccaatt gataccactg tcacacctgt      2100
     aatacaacac gctcgacgtc cacctctagc tctgatggac aaaattgagg agaagttgga      2160
     ttatttatta gcgtcagata taattgaacc agtctacgat tttagtcagt gggcctctcc      2220
     tttggttaca attattaagg aaaacggtga cctgcgactt tgtgtagaca tgcggcgagc      2280
     gaatttggct attaaacgag aagcacattt gatgccgact ttcgaggatt tccttcctcg      2340
     actgaaaaat gctaaaatgt tcagtaggct ggacatcaaa gatgcatttc atcaagtcga      2400
     attaaacgaa ccttctcgtt acatcacgac tttcataacg cacagaggaa tgtatcgtta      2460
     taaacgactg atgtttggca tttcgtgtgc tccagaaatg ttccagaagg tcctggagca      2520
     aatcctctca gattgtgaaa acgttattag ttttatcgat gacgtattgg ttttcggtaa      2580
     tactccagaa gagcatgatc gagctttaca gaaggtgttg gacactctcg aaagcaaaaa      2640
     cattctacta aatcatgcca agtgtgtttt ccgcgtcacc gaactagatt ttctaggaca      2700
     ccatctatca ggaaaaggag tgagacctac tgaagaaaaa atagctgctt taaaatcttt      2760
     tcgggcgcct caaacggcag aagaattgag gagttttctg gggctcgtta cgtacgttgg      2820
     taaatttctt ccggatttag caactgtatg tgcatcttta cgagagctga cccacaaagg      2880
     aacgacgttc aagtggctgc catatcatga gaaggcgttc caaaagctaa aagaaatgat      2940
     tgcagatata aaaatgttaa gatttttcga caattcacta cgtaccagag tgattgcaga      3000
     tgcatcgccg gtaggattag gtgctgtact ggtacagttt agtgatactt caaacgatct      3060
     ggatccacgt gtcatttctt atgctagtaa aagtttgagc cccgcagaaa aacgctattg      3120
     tcaaacagag aaggaagcgc tggcgttagt ctgggcagta gaaagatttt ctatttatct      3180
     cataggtagg aaatttgaac tagagacgga ccataagcct ctcgaagcca tattttcaac      3240
     aacctctaga ccgtgtgctc gtattgaacg gtgggtcctc cgtttacaat ccttcaactt      3300
     tgaagtgcga tatcggaaag gtgtcaataa tatagctgat cctttctctc gtctagcaac      3360
     gttaagttcg gaagatgcat ttgatggaga taatcaattt ttagtattag ctattttgga      3420
     atcagcagca attgatacag tggaactaga aaatgcatcg ttagaagatg aagagctttc      3480
     tatagttaaa agttgtttgc aacgtggaac atgggacagt gacaaagtca aatcatacga      3540
     aatgattcag agcgagcttg gagttgtagg agatatgtta gttagaggaa ataaactagt      3600
     tgttcctaaa gttttgagaa aaagaatgct aactttagct catgagggcc atcccggtga      3660
     aactgttatg aaacgtcggc ttcgagatcg cgtttggtgg ccaggtatgg accgagaggt      3720
     tacggcacac gtttcagcat gtcaaggttg tcgtctagta tctcttccca acaagcctga      3780
     gccaatgcat cgtagagaac ttccggtgag accttggctt gatgttgctc tggattttct      3840
     tggaccttta ccttcggggg aatacctgtt agttataatt gactactata gtcgatataa      3900
     ggaggtcgag ataatgaaac acataaccgc tgaagaaaca attgctcgtc tacgtaaaat      3960
     ttttacgaga ttgggtttgc cagtgacaat tactttggac aatgccagac aatttgtgag      4020
     tgcatcattt gaggactatt gcaaacagaa cggaatcatg ctgaactatt ccactcctta      4080
     ttggccccaa gaaaatggtc ttgtggaacg tcaaaatcgc tcgttattga agcgtcttca      4140
     aataagccac tcaatgggtc gtgattggaa atcagatcta caagactatc ttctaatgta      4200
     ctacacgtct cctcattcca taaccgggaa aacccccacg gagctttgct atgggcgaac      4260
     cattcgatct aaaattcctt ccttaataga ttttgaaact gtgccatcta gagctgagat      4320
     aacagataga gataaaatct tgaaagaaag gagtaaggag agtgaaaatg caaaacgaca      4380
     agccaagcta tccgatcttg aagttggcga taccgtgtta atgaaaaatt taactcctgg      4440
     aaataagctt atgccgaact tcaacccaag tgagtgtgtg gttgtgaaca aagaaggatc      4500
     gagagtaact gtgaggaata aggaatcgag taaagtttat caacgtaatg cagcacatct      4560
     aaagaaagtt cccagttgta catctgtcga agaagaggtc gaagaccctc cttcgtgtgt      4620
     cgatgctgaa cagacaccca ccatacaatc tgaaacaaga aaccaaatgt catcttataa      4680
     tttttctaga gtacgacgtc aaaccaaaca accctcttat ttgaaggatt ttgttatcca      4740
     cgaagtgtct tcagagtgaa ttataattct atgagaaaaa aggagatg                   4788
//
ID   Gypsy-244_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-244_AA_;
KW   Gypsy-244_AA-I; Gypsy-244_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-202
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1090-1090 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 202 BP; 65 A; 27 C; 49 G; 61 T; 0 other;
     tggtgcctgg cgcactgtaa atggttctac cttaaataaa gatacgttga tatgttgaag        60
     tgttaatctt tgggttgatg acttgggatt gaagagagta aacaaagctg gcatttacga       120
     cgtgcggaat acaacaatca tattattcga atattagtgg aatattgggg aatataaata       180
     attcggaggt caagtctcca ca                                                202
//
ID   Gypsy-245_AA-I repbase;    DNA;    INV; 7047 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-245_AA_;
KW   Gypsy-245_AA-LTR; Gypsy-245_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7047
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1091-1091 (2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           351..2351
FT                 /product="Gypsy-245_AA-I_1p"
FT                 /translation="MEMSVLRAQYSALNTAHLTVDELEHELVIRRMDKLAP
FT                 RASLERALRSRLKEEDSQSNVAYDFAKVNVVEELETCDDKLNSIKAFLENR
FT                 RSKKAPDQVFKSRLFHILFRMERLKDRELSEECMNSLAVVAGECLRLLNTY
FT                 FSATSHLPEVRAAELAIVNESLNRMRDELVEGNQQHEEEIGELVNLDGDEN
FT                 VGEQERRMTQRVDENENAVEGNLEEDENVEKLKKEQEKLSAENKQLLEVVS
FT                 QLLQRIEVLEAKQPKQAIQEQQAKTFNSTHLGETEKVPPKSSQPKPTDFLE
FT                 WLKDRNSSMDSSEQLAEPRKVVVDPSQPKSSEREWSKVNSNRLPVHKWTIR
FT                 YDGMDNGKRLNEFVKEVEFNARSEGFSEDELFQSAHHLFTNKARAWFMEVN
FT                 GDYELGSWKVLVRELKNEFLPIDIDYVYERQAYNRKQGAKEKFQDYYLDMV
FT                 RIFRGMSNPWDDRRKFDVLFRNTREDVRIAMLAANVTDVAKMKEFGKKFDA
FT                 INWQLYQRNERFFNNRPIRVDEINYHRQNFXNRQDRYNKNEPDRRKESGNF
FT                 RQNFNKGNGQKGYWKQRSSGEENQKRDEYKKSEKSDNKTHNPHRQKSPTPG
FT                 PSGSSALQRIVKAYIPIKKGICFNCHENDHSFEECPKEKHMFCFKCGFPGF
FT                 TLKNCPYCQSKNMHETAQ"
FT   CDS           2279..5503
FT                 /product="Gypsy-245_AA-I_2p"
FT                 /translation="MWIPWIHIEKLPLLSIKKHARDCSVRQVSLPNNVESP
FT                 HEIVASEPPEILNQLGYEQVLGENSGSEEIATIVTLSNDPRPFAKVEILGI
FT                 SVLGLLDSGAERTVLGVGSRRLISSLKLKIKPTNTNLRTAAGERLEVIGSA
FT                 DIPISFNGETKILPVVIAPKLNRRCILGYDFWRKFGIRPTFSQSVESVDED
FT                 TNRDLEEEEQLSEEQVQQLEEVKKLFLVASPGNFGKTDLIEHRIDFKEEFQ
FT                 GAEPVRKNPYPWSPEIQKKIHNSVDKMLQDNIIEPSESDWALPVVPVKKRD
FT                 SEEVRLCLDARKLNERTKRDAYPLPHQNRILSHLGPFKYLSTIDLSQAFLQ
FT                 VPLGQESRKFTAFSVPGKGLYQFTRLPFGLVNSPATLSKLMDRVLGYGALE
FT                 PFIFVYLDDIVVASHTFADHIQKLRELARRLKEANLYINLEKSNFCCQELP
FT                 YLGYILSRAGLRPNPDRVQAILGFEVPNSVRSLRRFLGMVNYYRRFIDKFS
FT                 ELTAPLTDLLKNKPKRVQWNNAANEAFKAIKERLISAPVMANPDFSLPFCV
FT                 QTDASDTAIAGVLTQVQNGEERVIAYHSEKLKGAELNYHAAEKEGLAALRC
FT                 IDKFRCYIEGTHFILMTDSSALTFIMKAKWRSSSRLSRWSITLQQYDMEVK
FT                 HRKGKDNIVPDALSRSIEALEVEDEDEWYKNLYNAVXENPENYMDFRIDGG
FT                 KLYKLVSARSDVLDYSFQWKECVPESSRPQIMKQEHDDNLHIGFEKCVEKL
FT                 KRRYYWPRMSANLKKYINNCVSCKENKPSTISTAPQMGQQRIATKPFQIIC
FT                 MDYIQSLPRSKQGNAHLLVILDIFSKYCLLVPVKKISSASLCKIVEELWLR
FT                 KLSVPQYLISDNATTFLSKEFQELLKKYEIQHWANARHRSQANPAERLNRT
FT                 INAMIRSYVRSDQRLWDTKVSEMEYVLNNTVHSSTKFSPHRIVFGNEIMTR
FT                 GSDHRLESNEELTDEVRMEKMRGVSKKVWEMVVENLKRTHESTKRQYDLRH
FT                 KRYSPTFDVGQRVYKRSFRQSSAGHDYNAKLGPVYTPCIIVAKKGTSSYEX
FT                 SDMNGKSLGVFSSADLKA"
XX
SQ   Sequence 7047 BP; 2211 A; 1358 C; 1647 G; 1825 T; 6 other;
     cggagcaaat cctgcaacta tgttacamtt tggcacccaa cgaacgaatt gtctttgcgc        60
     attccgtgct agggctcaaa cactttagag cttctgataa gaagcttgaa cttctttgcg       120
     gtactaggtc aaattgatct ggtcagcatt tttctaggat tttcaaatta tttagagctt       180
     ttgctaagaa gcgtgaacaa attttaggta ctttttcaaa ttaatttagc tttcgaaaaa       240
     cgaaagcgtt tacaaaacta ggtttttttt ttcaaatttt acagctttgt gctgaaatag       300
     gtttcttttt aatttaattc tactgatttc cggtggatag agctgcaatc atggagatgt       360
     cagtgctgcg tgcacagtac agtgcgttga atactgccca cctcaccgtg gatgaactcg       420
     aacatgagtt ggtaatccgt cgcatggaca aactcgcacc tcgcgccagt ttggagagag       480
     cgttgcgtag tcgtctgaaa gaagaagata gtcagtcaaa tgttgcatac gattttgcca       540
     aagtaaatgt tgttgaagag ttagaaacat gtgacgataa attgaattcg atcaaggcgt       600
     ttttggagaa cagacgatcg aagaaagctc cagaccaggt tttcaagagc aggttatttc       660
     acattctatt tcgtatggaa agattgaaag atcgggagtt gagcgaagag tgtatgaata       720
     gcctggctgt agtggctgga gagtgtttgc gmttgttgaa cacatacttt tctgctacct       780
     cacatcttcc ggaggttaga gcagccgagt tagcgattgt aaacgaaagt ttaaatcgta       840
     tgagagacga gttagttgaa ggaaatcaac agcatgaaga agaaatagga gagctagtca       900
     acttagatgg agatgagaat gtaggagaac aggaacgtag aatgacgcaa agagtagatg       960
     agaatgaaaa tgccgttgaa ggaaatcttg aggaagacga aaatgtagaa aagttgaaga      1020
     aagaacagga aaagctgtcc gccgaaaaca agcaattgtt agaggtagtc agccagttgc      1080
     ttcaacgtat cgaagttttg gaggctaagc aaccaaaaca agcgatacaa gaacaacaag      1140
     ccaaaacgtt caacagcacc cacttaggcg aaactgagaa ggttccacca aaatcttctc      1200
     agccaaagcc gacagatttt ctggagtggt tgaaagacag gaacagttca atggatagtt      1260
     cagagcagtt agcagaacca agaaaagtag tggttgatcc tagccaaccg aaatcgtcag      1320
     agagagaatg gtcgaaagta aatagcaacc gtttgccggt gcataaatgg acgattcggt      1380
     atgacggcat ggacaacggt aaacgcctga atgagtttgt gaaggaggtt gagttcaatg      1440
     ctcgttcaga agggttctct gaagatgaac tgtttcagag tgctcatcac ctgttcacta      1500
     acaaagccag agcttggttc atggaggtga atggtgatta cgaattaggg tcttggaaag      1560
     tgttagttcg cgaacttaaa aacgaattct taccgattga catcgattac gtctacgaaa      1620
     gacaggcgta taatcggaaa cagggcgcca aggaaaagtt tcaggactat tacttggaca      1680
     tggtccgtat tttccgaggt atgtccaacc cctgggatga taggcgcaag tttgatgtgc      1740
     tcttccgcaa tacgcgtgag gatgtgcgta tcgccatgct tgctgccaac gtgaccgacg      1800
     tagctaaaat gaaagaattc ggtaagaagt ttgatgcgat maactggcaa ctataccagc      1860
     gaaatgaaag attctttaat aataggccaa ttcgggtaga tgagattaat taccaccgac      1920
     agaatttcsc aaatagacag gatagataca acaaaaatga accagatagg aggaaggaat      1980
     cgggaaattt caggcagaat ttcaataaag gtaatgggca gaaaggttat tggaagcagc      2040
     gcagttcggg tgaggaaaac caaaaaaggg atgagtacaa gaaatctgag aaatcagaca      2100
     acaaaactca caatccccat agacagaaaa gtccaactcc gggaccgagt ggaagtagtg      2160
     ccttacagcg cattgtcaag gcttacattc caattaagaa gggcatttgc ttcaactgcc      2220
     atgaaaatga tcacagtttt gaggaatgtc ctaaggagaa acatatgttt tgtttcaaat      2280
     gtggattccc tggattcaca ttgaaaaact gcccttactg tcaatcaaaa aacatgcacg      2340
     agactgctca gtgaggcaag tcagtctccc aaataacgta gaaagtcctc acgaaattgt      2400
     cgcgtcagaa cctccagaaa tactgaacca actcggctat gagcaggtac tcggtgagaa      2460
     ctcaggaagt gaagagatcg caaccattgt cacgctgagc aacgatccga gaccatttgc      2520
     gaaggttgag attctaggta tttctgtgtt aggtttgtta gacagcggtg cggagaggac      2580
     tgtattaggt gtaggaagta ggaggctgat tagttcatta aaactgaaaa ttaaacccac      2640
     gaacacaaat ctgagaacag cagctggaga aaggttagag gtgattggtt cagcagacat      2700
     tccaattagt ttcaacggtg aaacgaagat cttacccgta gtgattgctc caaaactcaa      2760
     tcgtagatgc atcctagggt acgatttttg gcgaaaattt gggattcgtc cgacgtttag      2820
     ccagtctgtc gagtccgttg acgaagacac taacagggat ctagaagaag aagaacagtt      2880
     gagcgaagag caggttcaac agttagagga ggtgaaaaag ttgttcttgg tagccagtcc      2940
     tgggaatttt ggaaagacgg atcttattga acaccgtata gattttaagg aggagtttca      3000
     gggagcggaa cctgttcgga agaatccgta cccctggagt ccagaaatac agaagaaaat      3060
     ccataattcc gtcgacaaaa tgctccaaga caacatcatc gaaccttctg aatctgactg      3120
     ggctctacct gtagtaccag taaagaaacg tgatagcgaa gaagtaaggt tgtgccttga      3180
     tgctagaaag ctcaacgagc gcacaaaaag ggatgcgtac cccctccccc accaaaatcg      3240
     cattttaagc catttaggac catttaagta tctgtccact atagatctat cccaagcctt      3300
     tttacaggtg cccttggggc aagaatctcg taaatttacg gcattctcag tcccagggaa      3360
     gggtctatat cagttcacac gtttaccgtt tggactggta aacagcccag ccaccttaag      3420
     caaacttatg gaccgtgttt tagggtatgg tgccctggaa cccttcattt ttgtatatct      3480
     ggatgatatt gtagtggcca gtcatacgtt tgcggatcat atccaaaaac tgcgagaact      3540
     tgcgagacgt ctcaaggagg caaatctcta cataaacctt gagaagtcta acttttgctg      3600
     ccaagaactg ccctatttgg gctacatttt atcccgagca ggtcttagac ctaacccaga      3660
     tcgagtccaa gcgatattgg gttttgaggt cccaaactcg gtgcgttcat taaggcgatt      3720
     cctcggtatg gtcaactact accgtaggtt catcgataaa tttagtgaac tcactgcacc      3780
     tctcaccgac ttgcttaaaa acaagccgaa gagagtgcag tggaacaacg cagcaaatga      3840
     agcttttaag gccatcaaag agaggctgat atcagcgcct gtgatggcca acccagactt      3900
     tagtctgcct ttttgtgtcc aaacagacgc aagtgacacg gcaatcgctg gagttcttac      3960
     gcaggtccag aatggggagg aaagggtgat tgcgtaccat tccgaaaagt taaagggcgc      4020
     agaactgaac tatcatgcag cggaaaagga gggactagcc gccttacgct gcattgataa      4080
     attcaggtgc tacattgagg gcacacactt tattctgatg accgattcct cagctttgac      4140
     ctttataatg aaggccaaat ggaggtcatc ttcacgtctg agcaggtgga gtattacgct      4200
     acagcaatac gacatggaag tgaagcacag gaaagggaag gacaacattg taccggatgc      4260
     cctttctcga tcaatcgaag ctctagaagt agaggatgag gacgagtggt acaaaaattt      4320
     gtacaatgct gtcgwagaaa atcccgaaaa ttatatggat ttccgaatag acggtggcaa      4380
     attgtacaaa cttgtgtcag cccgatcaga tgtcctggat tacagcttcc agtggaagga      4440
     atgcgttcca gaatcatctc gtccacaaat catgaagcag gagcacgatg ataacttgca      4500
     catcggcttc gaaaaatgtg tggaaaaact caaaaggcgg tattactggc ctcgaatgag      4560
     tgccaaccta aaaaagtata taaacaactg cgtttcgtgc aaagaaaaca aaccgtcgac      4620
     aatttctact gcacctcaaa tgggccaaca acggatcgca accaaaccgt tccagatcat      4680
     ttgtatggac tacattcagt ctttaccccg gagcaagcag ggaaatgcac acttattggt      4740
     cattcttgac attttctcta agtattgcct gcttgtcccg gtgaagaaga tctcgtccgc      4800
     tagtctgtgc aagatcgtgg aagagttgtg gctgcgaaag ttgtcggtgc cccaatatct      4860
     gatttccgac aatgcaacaa cgttcttgtc gaaagagttc caagaactgt tgaaaaagta      4920
     cgagattcaa cactgggcga atgctcgtca caggagtcag gcgaatcctg cggaacgttt      4980
     gaaccgtaca atcaacgcga tgatcagatc atacgtccga tcagatcaac gtctgtggga      5040
     cactaaagtg tcggagatgg aatacgtgtt gaacaacaca gttcactcgt caaccaaatt      5100
     ctctccacat cgaatcgtgt tcggaaatga gatcatgact cgtggatctg accaccgttt      5160
     agagagtaac gaggaactca ccgatgaagt tcgtatggag aagatgagag gtgtgtccaa      5220
     aaaggtgtgg gagatggttg tagaaaacct aaaaaggaca cacgagagta cgaaaaggca      5280
     gtacgattta cggcacaaga ggtactcacc aacattcgat gtaggacagc gagtgtataa      5340
     gaggtcattc cgacaatcct cagctgggca cgactacaac gccaagctcg gcccagtcta      5400
     cactccctgc atcattgttg ccaaaaaggg taccagctca tacgaastct ccgacatgaa      5460
     tggcaaatct ctcggcgtct tttcgtcggc agatttaaag gcgtagtcaa caatttctcc      5520
     atggtacgtc ttgttcctga gaatcgagtg gtcgaatcgg ttgacgacag gttttccgta      5580
     aaatcctcat caggaagtca cgtcagatac cattcgcata agctcaattc ggggatggaa      5640
     caaacggaca cattcaaatg tgtgcagctg cagatgcatt cattcatcaa tgcccatcgt      5700
     taacgaacga ggcatcgcat ccattcaaaa atcctaggaa accgtagaat attttaataa      5760
     ttttgtgaag taaaatttta tgtgttattt tctctttttg tttttaattt gtttgtttta      5820
     aaccgtgttg gaaagtgttg gaaattatag aattaaatat gtattcaaat gcaaagtacg      5880
     ttttatcatt tagctagctt ccttgtaaat ggaccagtct aaggttgcta tgttagtggt      5940
     agatgagagt gagcatggaa aaaagtatat ccatagagca tgggctaggc aagatcgagc      6000
     cacataaact cttaccacaa taattgtagg aaacacatca atagacaaac aaatttagga      6060
     taaccaatta atcgctcaca atagtttaac ggtgcacagt acaattaaag gtacttacct      6120
     ggaatcatgc ctcatggcaa gcaccacaat gagcttctag tcaggaataa acctggaaaa      6180
     ctaggccttt ttatgagaat tgaaccacca aaatgatcat ttggccaaac tttcgtcgac      6240
     gaaatgtcat taaaatgata aaaaagctct aaaatgcctg ttttcacaaa tttatcctaa      6300
     ctagaaccac attggatact taccacgtcc taacaatagc cacatatgca gtccataagt      6360
     atagctcgat cttcccgaac agcacacagt tgatcatgat aacgataacg cgcgtatatg      6420
     atagtagatc ggccgatcga cagtgaactc cgacactgag aaatattgca aagtactaaa      6480
     cgaaatgttt cgtaccatag tagagggtat ctctgcaacg ttgtttttgt aaataataat      6540
     tccggaattt agtttgatta ttttgcatgt agtttcaatt gtagattgtg tagtattttt      6600
     aaagttgtat aagcaacatt tttatttggt gataggtatt tttttaattc gttgtaaata      6660
     tttttaaatt gtttctcatc aatgttggtc aataaaattt agtatcttgg gtacgttgga      6720
     gaccggagtc ttagtacgtt gatggtcagt agaaggttga acctttaaat tgcgtggagt      6780
     tggctaagcc aacgatgatg ccttatgacc ccgtcccatg tatatgctaa aataaaatgc      6840
     tctcttaccc gggtggattt ttgaaattga aggagtggag cagtgtgtca agattttgtc      6900
     tatttcattg taaaaaaata agtgtctgtc aacgaagttt gtgaatttca ggttcagagg      6960
     tacgtgttaa gttgtcagag tgttgagtgt gtaaatgaaa aaaatattag ctccactaat      7020
     atttttttta cccgagcggg gggagag                                          7047
//
ID   Gypsy-245_AA-LTR repbase;    DNA;    INV; 1173 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-245_AA_;
KW   Gypsy-245_AA-I; Gypsy-245_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1173
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1092-1092 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1173 BP; 340 A; 239 C; 357 G; 233 T; 4 other;
     tgtaaccagt gtcagtgtga tgtctagtgt tgatgagatt tgtcgcgttc agtttcgtaa        60
     atgtattgta agaaaaaaag aaaacgtttg tagataggtt tgagtaagat gtcccgaaag       120
     atcccacgaa cgcagccaac acagctccac cctatagaag gacgagagta gtgccgctag       180
     tcaccaccag ggctgcgcta aaccacacga atgggcggcc atgggggtgg cgaaatgggt       240
     ggccatgatg aggcggatca tcgatgacgt agatggacat gggtcaacgg ccaaaggttc       300
     ggggtcaacg ttcaccagca agacacttsa taagcctggt gatcgttgaa gacagcagaa       360
     gtgctttcaa aaagttataa agctataaga gaaagtgttg tgagaagttt aagtgagtag       420
     ataatttgaa gaggagaaag gaagtgaagt gaaactggac atccaggtaa attaataacc       480
     ccgaacctag ccgaccgtac cgcgtctgtt tccaccattt gaaatccgtc tgccacagga       540
     cctcgcggtt tttattcgaa atcgccattg ccgattgagc cgttcckacc tgcgttgaac       600
     ctactcgcta atccagtagt gtatccctga agacctgtac cccagaacga caaccgagtg       660
     cgcttggaaa cccaggcttt ccagtgaatc cacggatcac tgaagcctcg agtccgtcac       720
     cacactcgag gggcgcacgg gacaggcagg aggtccacga gaggctgcag ccgaagtagg       780
     agagaggtga ggaascattc gtccgcccct ggccaggaka gaaggagaag tctaagcggt       840
     cggtgaagga gcaacgggag gagagcggag aaggtgctgc agtgcgcggg gccccgaaga       900
     agtgaaggaa ttgtaaggta ggagtagata agaaagtggg aggcgtcgtc cggtgttgag       960
     gacggacgca agtaaagaga aggaaagatt aggaggagga acaggaagta ggacgtcaag      1020
     gaagtggaaa tacaagtgta cacgagacca cgaaatagag ggagttttac tggagtctat      1080
     ctataagtgt tttctttcgc ggagtgtcac gagcgtagcg ccgaccctga gttagcttgg      1140
     agacgggggt ctcatctagg ctgtggagta aca                                   1173
//
ID   Gypsy-246_AA-I repbase;    DNA;    INV; 4416 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-246_AA_;
KW   Gypsy-246_AA-LTR; Gypsy-246_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4416
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1093-1093 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [1841-2332] - Reverse transcriptase
CC   Positions [3453-3929] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..2221
FT                 /product="Gypsy-246_AA-I_1p"
FT                 /translation="MSETERVLEEISKSVAESVVGVPNSQEEAGGSTSGQT
FT                 SLPRSGAKEESDSESELFRSPTGSRRLSFEELLHKDPRYKKRTMDDAAMKQ
FT                 LIAALTGIAQGSAQRRFDVRDVKDLVVQFDPDIPTTPTAEQWVDSIVKAAA
FT                 LYQGNDEWKLQCGILNLNGAAKLWFTGVAVNTWDEFKTALIRDFPTSVDAV
FT                 GIHQAMINRKKLPHESLETYFYSHVALGRKGKLADEAIIKYIVLGLEGRFG
FT                 TITQVSTLPELLKQLKWLAEVRDLKPTEGHVRPSILKSAKSSGALSANIKC
FT                 YRCNGEGHVAANCSVKSAGKSHANFECYRCNQKGHIAKNCSKTTPKPFSRP
FT                 MQEIRQPSNFVKTVIVGSSEIDALYDCGSAVTTIKESCAGILNCVEPCNIE
FT                 LVGFGGNKVQVRGKSAEVINLDGIVVECDVCVVPNKVQANSMIIGRDILDR
FT                 EDIRFVKEKGSVRIEKIAVQHNDERQSGPSSDKSGTQNNVYSIRAYEPIVA
FT                 EEINVDSVGEEREKIFELIKCYRPCFAKNYLEMGTARDCEMVIELIGAEKP
FT                 IHTKQYPLEYSREKVVETIVDDLLAANIIRPSNSPYNSPTVLVRKKNGDWR
FT                 MVVDYRAVNARTVKDSWPMPVIEDCLNRLVGDRLFTAVDLFRGYHQIPIAE
FT                 NSRKFTAFSTPFGHFEYVKMPFGLSNGSAVFQRKDDRYGDRTPSFDRDYSV
FT                 SG"
FT   CDS           2166..4364
FT                 /product="Gypsy-246_AA-I_2p"
FT                 /translation="MIDTVIAPLRSIGIIAYLDDAILGGRDVDDVLRKFEA
FT                 LLKRLMEFGLTVNLEKTQFLKVSLDFLGHEVSEGEIRPGKEKIRAISDFPQ
FT                 PVNVRNIREFLGLANYFRRFVKEFSIIAEPLTRLTKKDEPFTWEEEQETAF
FT                 GKLKEALVNQPVVVMYDPARNLEVHTDACSHGLSGILLQQMEDGLHPISYF
FT                 SRKTSPVECLKYSYELEALAVVESVERYRKYLLGRHFVVVTDCEAVKKTIA
FT                 KKVMLPVVGKWLLKLQEYDFDLVHRKGEKMQHADCLSRNPVLEPESEEPEP
FT                 VMAHVMEVNIKEDEWLKLLQREDPKLFEMMKILSKPPVENREKQIHKEYVL
FT                 KDEGVMRKCIDGLKWVVPTRARWRIARNYHDDLGHKGVEKVLEAVKRCFWF
FT                 RRMRSYLKRYIGSCVHCAYVKAKGGAKEGLLHPIEKIAVPFDTIHLDHIGP
FT                 FIRSSALNEHIIVLVDGFTKYVVLKAVRNTKTSPVIQMLNDLFAIFGKPRR
FT                 IVTDRGTAYTSKDFEKFCVDLGIVHVKVAVGSPRANGQVERENRNVLDAVR
FT                 CMVKENDKSWDKHLRMIQWGLNTMINDSTKVSPHTLLFNYNPRDIMQNQLL
FT                 MMFAAEVPAEANADNLKREVIGRIEKEQRKQKHYFDKSRRPARQYLEGELV
FT                 LVEKDPQATGLSKKLEPKYKGPYLVERALGNDRYLIVDVPGVQLKQKKTST
FT                 IFAADRMKPWSVNASLEDSDDDNMSSEDSDETM"
XX
SQ   Sequence 4416 BP; 1270 A; 861 C; 1215 G; 1070 T; 0 other;
     attctgtaga caggatcgat tttgttacgg gatcgcggtt agcatttgag catgcgtgac        60
     taagttaatc gtgggcgcga aaagcaattt tagaatcggt gagactttcg gtgtgatgag       120
     cgagaccgaa agggtgttag aagaaatttc taagagcgtg gccgaaagtg tggttggcgt       180
     gcctaatagc caggaggagg ctggaggcag tacatcaggc cagacaagtt tgccgcgaag       240
     tggtgctaaa gaagaatccg attctgaaag tgagctattt cgatccccaa ccggttcacg       300
     acgtctcagt tttgaagaac tgttgcataa ggatccgcgt tacaaaaagc gaacaatgga       360
     tgacgccgcg atgaaacaat tgatcgctgc ccttactggt attgctcagg gaagcgctca       420
     gcgtcggttt gatgtgcgtg atgtgaagga tctagtagtg caatttgatc ccgatatacc       480
     cactacaccg acagctgaac aatgggttga ttctattgtg aaggcggcag ctctatacca       540
     gggtaacgac gaatggaagc tccaatgtgg aatcttgaac ctaaatggcg cggccaagct       600
     atggttcact ggagtggctg tgaatacgtg ggatgaattt aaaacagctt tgattcgcga       660
     ttttcctacg tccgttgacg ctgtcgggat tcatcaagcg atgattaacc gaaagaaatt       720
     gccacacgaa agcctggaga cttacttcta tagtcatgtc gcattaggta gaaaggggaa       780
     gttagctgat gaggccataa tcaaatacat tgttctgggc ttggaaggga gattcggaac       840
     cataacccaa gtgagtacac tgccagaatt gctcaagcag ctaaaatggt tggcagaggt       900
     tcgagatcta aaacctaccg aggggcatgt gcgtccttcc atcttgaaat ctgccaagtc       960
     ctctggagcg ctgagtgcca atatcaagtg ctatcgttgc aacggcgaag gtcatgtggc      1020
     tgccaattgt agtgtgaaga gtgccgggaa atctcacgca aactttgagt gctatcggtg      1080
     taatcagaag ggtcatatcg cgaaaaactg cagtaaaact actccgaaac cgttttctcg      1140
     acccatgcaa gaaatccgtc agccaagcaa tttcgtgaaa acagtgatcg tcggaagttc      1200
     tgaaatagat gcactttacg attgtggttc tgcggtaact acgatcaaag agagctgcgc      1260
     tggtatactg aactgtgttg agccgtgcaa tatcgaacta gtagggttcg gtggtaataa      1320
     agtgcaagtt cggggaaaga gtgccgaagt gatcaatctt gatgggattg tagtagagtg      1380
     cgacgtttgt gtagttccca acaaggttca agcgaactcg atgataatcg gaagggacat      1440
     tctcgatcgt gaagatattc gtttcgtgaa ggagaagggt agtgtgcgaa ttgagaagat      1500
     tgcggtgcaa cacaacgatg agaggcagag tggaccatcg tcggataaga gtggtacaca      1560
     aaataatgtg tacagcatcc gagcctatga acctatcgtt gctgaagaga taaacgtgga      1620
     tagtgttggt gaagagcgag agaaaatttt tgaactgatc aagtgctatc gaccatgttt      1680
     cgcaaaaaac tacctagaaa tgggtaccgc aagagattgt gagatggtga ttgaacttat      1740
     cggagccgaa aagccgatac atacaaaaca gtatccattg gagtactcgc gagaaaaagt      1800
     ggtggagact attgtagatg atttgttagc agcgaatata attcgtccgt ctaactcccc      1860
     atacaacagc ccaacagtgt tagtgcgtaa gaagaacggc gactggcgca tggtagtcga      1920
     ttatcgggct gttaacgcta gaacggtgaa ggattcttgg ccgatgccag ttatcgagga      1980
     ttgcctcaac cgattagttg gcgatcgact gttcaccgct gtggacttat ttcgaggcta      2040
     tcatcaaatt ccaatagcgg agaatagcag aaagtttact gccttctcga cgccttttgg      2100
     acatttcgag tacgtgaaaa tgccctttgg actaagtaac ggtagtgcag tgttccagcg      2160
     aaaggatgat cgatacggtg atcgcacccc ttcgttcgat cgggattata gcgtatctgg      2220
     atgatgcaat tctcggtggg cgtgatgtag atgatgtgtt gcgcaaattt gaagctctgt      2280
     tgaagcggtt gatggagttt ggtctaacag tcaatttgga gaagactcag tttctgaaag      2340
     tcagcctcga ctttctgggc catgaagtga gcgaaggtga aatacgaccg ggaaaagaaa      2400
     agattcgtgc tatcagtgat tttccgcaac ctgtgaatgt gcgcaatatt cgcgagtttc      2460
     ttggcttagc caattacttt cgtcggttcg tgaaggaatt cagtattatc gccgaaccat      2520
     taacacgact tacgaagaaa gatgaaccgt tcacgtggga agaagaacaa gaaacagctt      2580
     tcgggaagtt aaaagaagct cttgtgaatc agccggtcgt agtcatgtac gaccctgctc      2640
     gaaatctaga agtgcataca gacgcttgtt cgcacgggct gtccggaata ctgttacagc      2700
     aaatggaaga tggtctgcat cccataagct actttagccg aaaaacttcg ccagttgaat      2760
     gcctgaagta tagttatgaa ctagaggcac tcgcggttgt tgaatcagtg gaaagatacc      2820
     gtaaatactt gctgggaaga cactttgtgg ttgtgacgga ctgcgaagcc gtgaagaaaa      2880
     cgatagcgaa gaaagtgatg ttaccggtag ttggcaagtg gttgctgaaa ctccaagagt      2940
     acgattttga tttagtgcat cgaaaggggg aaaagatgca acatgccgat tgcctcagtc      3000
     gaaaccccgt tcttgaaccg gagtccgaag aaccggagcc ggtgatggct catgtgatgg      3060
     aagtgaacat caaagaagac gaatggttga agttactgca aagagaagat cctaaactgt      3120
     tcgagatgat gaagattttg tcaaaaccac cggtcgagaa ccgggaaaag cagatccata      3180
     aggaatacgt tctgaaggac gagggtgtga tgagaaaatg tatcgatggg ctgaagtggg      3240
     tggtgccaac cagggcgcgc tggcgaatcg cccgcaatta tcacgacgat cttggacata      3300
     aaggagtgga gaaagtgcta gaagctgtga agaggtgttt ttggttccga aggatgcgta      3360
     gctacctgaa gcgctacatc ggatcgtgtg ttcactgtgc ctacgtgaaa gcgaagggag      3420
     gcgcaaagga gggcttgttg caccctatag aaaaaatcgc agtgccattt gatacgattc      3480
     atttggacca tatcggtccg tttattcgtt cgtcagcctt gaacgaacac attatcgtgc      3540
     tcgttgacgg tttcaccaag tatgtggtac taaaagcggt gcgcaacacg aaaacatcac      3600
     cagtgattca gatgctgaac gatttgtttg cgatttttgg taagccgagg cgtattgtca      3660
     ctgaccgagg aactgcgtac acctccaagg acttcgaaaa attctgtgtt gatctcggaa      3720
     tagtacatgt gaaggtggct gttggcagtc cacgcgcaaa cggacaagtt gaacgcgaga      3780
     atcgcaacgt actcgatgct gtgcgctgta tggtgaaaga aaatgacaaa tcatgggata      3840
     agcatcttcg tatgattcag tggggtctga acaccatgat caatgattcg accaaagttt      3900
     ctccacatac gctgctattc aactataacc cacgggacat tatgcagaac cagctgctga      3960
     tgatgttcgc tgcagaagtc ccagcagagg cgaacgcaga taatttgaaa cgtgaagtga      4020
     ttggtcggat cgagaaggag caacggaaac agaagcatta tttcgacaag tcacggcgtc      4080
     cagcaaggca atatctggaa ggcgaactag ttttggtgga gaaggatccg caagcgacag      4140
     gtttgagcaa gaaactagaa ccgaagtaca aggggccgta cctcgttgag agggccctag      4200
     gcaatgaccg ttatttgatc gttgatgttc ctggagtgca gttgaagcag aagaagacat      4260
     ccactatttt cgctgccgat cgaatgaagc cttggtccgt caatgcatca ttggaggaca      4320
     gcgatgacga caatatgagc tccgaagact ccgacgaaac aatgtaatat cgccggggcg      4380
     ggatataacc tgtggtgtcc gttataacag atatta                                4416
//
ID   Gypsy-246_AA-LTR repbase;    DNA;    INV; 180 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-246_AA_;
KW   Gypsy-246_AA-I; Gypsy-246_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-180
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1094-1094 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 180 BP; 51 A; 41 C; 26 G; 61 T; 1 other;
     tgaaatattg aattcgaaat tttkcatttg tgaaccaccc taacgccacc caacaattgg        60
     gggctttcct tttgcttttc atctattata taacatttct agtcagtaat atatctcccg       120
     ttgaactgag cggccgcaat atcgttgtaa atccgaacgt ctttaaaaga tcctcttaca       180
//
ID   Gypsy-247_AA-I repbase;    DNA;    INV; 5934 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-247_AA_;
KW   Gypsy-247_AA-LTR; Gypsy-247_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5934
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1095-1095 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4801-5289] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           648..1904
FT                 /product="Gypsy-247_AA-I_2p"
FT                 /translation="MKTHENRIIIDEGINHLNNILRNLNKAPNRKYRKITL
FT                 EQKLINAKLTYGKVTDALAIIETEIKESELFFLTNAIRQVYSDVHILILSK
FT                 LERAAIHKISLFTLSYAILFINKLLNKIKSKMAKVNIKTGATLINMYDGNP
FT                 KNLDAFLDSVALFVDIVNNENAAASQAVKDAAKATTLRFIKTRLTETARQS
FT                 IPENANLDQLIDALKTNCSSKTTAENVLAKLKNTKQTSSTEDFCTEVEKLT
FT                 QELKSIYIRNRIPGDVALQMATKCGVDALIAGTKNSETKTILRAGTFTRLN
FT                 DAIQKLHENDAVQKAQGPEDKHKNANAMQAQVFMANRNQYNRGRGRSGSFN
FT                 YQRGNRNPHNRLGRNWQNSNQSSTIITNLVFKTREVNGIHEDMEIQEDITV
FT                 KEDDQLFISCNLDRKRRINIANSRL"
FT   CDS           2503..5604
FT                 /product="Gypsy-247_AA-I_1p"
FT                 /translation="MVVYSQEVEPGIFCGNTIISAKEPIFKFINTTNDEVY
FT                 IAYANFRPKMEPLRNFHICKTQNSSKPNSERRAKILKGVNIQQIPTYAKND
FT                 FEKLVTDYEDIFCLPDEKLTFNNFYTQNINLNNNVPVYIPNYKTIYSQGEE
FT                 IENQVQKMLQEDIIEPSVSSYNSPILLVPKKSEDNDKKWRLVIDFRQLNKR
FT                 ILPDKFPLPRIDSILDQLGRAKYFSTLDLMSGFHQIPLEENSKKFTAFSTN
FT                 SGHYQFKRLPFGLNISPNSFQRMMTIAMAGLTPERAFVYIDDIVVIGCSLK
FT                 HHLQNLRTVFERLRKYELKLNISKCKFFRTEVTYLGHKLTDKGILPDEAKY
FT                 ATIKNYPVPKNVDDVRRFVAFCNYYRKFVENFSQIANPLNKLLKKNTKFIW
FT                 TSECQHAFNLLRHNLMSPRILQYPDFSKSFTLTTDASDIGCGAVLSQTTET
FT                 GEQPIAFASKTFIPAEKNKPTILKELLAIHWAINYFKPYLYGKRFTVRTDH
FT                 RPLVYLFGMKNPTSKLTRIRIELEEFDFDVVYIKGKENVAADALSRIVTTS
FT                 EELRQSNILLVNTRSMTRKKAQLKKIQEKIQEEIKEIDHLSVYETERPTET
FT                 RKMMKLSTAVENNTMKFMIWKKDNKTLFAQVHQDVRNGSHALEHALSEIEK
FT                 IAKGFKIQKLAMSADDYNFTLVPMNLFKIIAHKTLKQLQIIIYKEPLFVNS
FT                 KDDILTILNNHHNTPLGGHVGQHRLYLRLREKYKWRDMKNSIAHFVKACEL
FT                 CRRNKIIKHTKEPMRITTTPSKAFEIISIDTVGPLPLTIKNNRYCVTIQCD
FT                 LTKYIVVIPIQNKEANTIAKALVENFILTYGNFLEMRSDQGTEYNNEVLNQ
FT                 ISKLLQIKQTFSTPYHPQSIGSLERNHRCLNEYLRSFTNEHQSDWDEWTKF
FT                 YEFSYNTTPHTDHNFTPFELVFGKKATLPHDTIQNNNEPIYNYDSYKSELK
FT                 FKLKKSHEIAKQILLEQKNRRKEQFDNNINPISVNINDKIYLKNENRRKLD
FT                 SFYLGPYKITKIDEPNCEIEHIYFQVKL"
XX
SQ   Sequence 5934 BP; 2270 A; 1085 C; 998 G; 1580 T; 1 other;
     attaagaaaa tttggtgaag aaagtgatca acaaaatatg agaaaaaaaa tgtagaattg        60
     gtggacaaat aattggattc gtgttttaaa agtgttctgg aaaaktaaaa tgggtaatga       120
     agtcacaaca ctagccccac caagggtgcc ggaagaaatt atcaaaattg tgaatactaa       180
     cgtacagcaa acagctcact tagaaagatc agctgacgca acgacgaaac tggtgtatat       240
     tggaactgca gttttagtgc ttgtgtttct atacgttatt tatcatatca tcatcaagct       300
     cgaacgactg cgaacccagg aagctataaa gcgagcagtt tcgcttgcct ccgtaacagc       360
     aatcaagtaa gagcaatgac atttcaagtg cgacgcagtg acagtgaaat caacatgaga       420
     atcaacggtc catccttgct gctgttttgt gcgatgttaa tggtgttgct gctaaaatac       480
     atgtacaact ggctgtgcga ggaactgcga gactggaagg aaaatataca gatggcgaga       540
     aacgcaatac ggtgacgtaa acggcattga agtgagttcg ttccatacgg aatttatttt       600
     tttttcaata catttttata ttatattttg attctaattt atttgatatg aaaacacacg       660
     aaaatagaat aatcatcgat gaaggtatca atcatttgaa taatatcctg agaaatctta       720
     acaaagctcc gaacagaaaa taccgaaaaa ttactttaga gcaaaaatta attaacgcaa       780
     aattaactta tggtaaagtt acggacgcat tagctataat tgaaaccgag atcaaagaat       840
     cagaattgtt ttttttaaca aatgctatta gacaagttta tagcgacgta cacatattaa       900
     tattatctaa acttgaaagg gctgcaattc ataaaataag cctgttcaca ttatcatacg       960
     caattctctt tattaataaa ttgttaaaca agataaaatc aaaaatggca aaagtaaaca      1020
     ttaaaactgg tgccacacta atcaatatgt atgacggtaa cccgaagaat cttgacgcat      1080
     ttctagattc cgttgcacta ttcgtcgata tagttaataa cgaaaacgcg gctgcttcac      1140
     aggctgtcaa agacgcagca aaagccacca ctcttagatt tatcaaaacg cgacttacag      1200
     aaaccgctag acaatcaata cctgaaaacg caaatcttga tcagttaatt gatgcattga      1260
     agacaaattg ctcatcaaaa accaccgctg agaatgtttt agcgaaactt aaaaatacaa      1320
     aacaaacgtc ttccacagag gatttctgta ctgaagtgga aaagctcaca caagagctga      1380
     agtccatcta catacgaaac agaataccgg gtgatgtagc gttacaaatg gccaccaagt      1440
     gcggggtcga cgcattaatt gctgggacga aaaattcaga aactaaaaca atactgcgcg      1500
     ctggaacatt taccaggctg aacgatgcta tccaaaaact acacgagaat gacgcggtac      1560
     aaaaagctca gggcccagaa gataaacata aaaacgcaaa tgccatgcaa gctcaggttt      1620
     tcatggccaa caggaatcaa tacaatagag gccgtggacg aagtggtagt tttaattacc      1680
     aacgagggaa tcgcaaccct cataacaggt tgggacgaaa ttggcaaaat tccaatcaat      1740
     cctctaccat aataaccaac ctcgttttca aaaccagaga agtgaatgga atacacgagg      1800
     acatggaaat ccaagaggac attacagtca aagaggacga ccaactattt atttcatgca      1860
     acctggatcg caagcgacga atcaacatag ccaacagcag gctctagcac taccaatgca      1920
     acaacatcag caaaatcaac aaattccgat ggcgaatagc cagaacttta caggctccca      1980
     acaaataatg ccaaatccaa attttttagg cgcacagttt ggacagcatg cacgataaat      2040
     gcatcagttt ccaactatgt aaacctgaca ctagatttgt ctgatacccg ttgtactttc      2100
     ttagtggaca ctggtgctga tatatctatc ataaaagcaa acatagtaaa acctacacaa      2160
     atatattatc ccgacgagaa atgctttatt tctggaatcg gacataatgg tatttcgtca      2220
     cttggtagca cttatgctaa tataatagta gatggcacat cggtgaacca aaaatttcaa      2280
     atagtggaaa acgattttcc aataccaacc gatggcatta ttggaagaga ctttttaagt      2340
     gtgaaccaat gtaaaataga ttatgagcct tggttgttgt cgtttaaagt aaagcagcaa      2400
     gaaatttcaa tcccaattga agacaatttt cagagaaaac tttttctacc tccccgccat      2460
     gaagtcactc gatacatacc aggattagag ttacaagaag atatggtggt gtattcacaa      2520
     gaagttgaac ctggaatttt ttgtggtaac acaataatat cggccaaaga gcccatattc      2580
     aaatttataa atacaacaaa tgacgaagtt tatatcgctt atgccaattt cagaccaaaa      2640
     atggaaccgc ttagaaactt tcatatctgc aaaactcaaa attctagcaa acctaactcg      2700
     gagcgacgtg caaagatttt gaaaggagtc aatatacaac aaattcccac ttatgcgaaa      2760
     aatgatttcg aaaaactagt tactgattat gaagacattt tttgtttacc tgatgagaag      2820
     ttgacattta acaattttta cacacagaac attaacttaa acaataatgt tcctgtgtac      2880
     attcccaact acaaaacaat ttattcgcaa ggagaagaaa ttgaaaacca agtgcaaaag      2940
     atgctacaag aagacattat agagccttca gtttcatctt ataattcacc aatactacta      3000
     gtcccaaaga aatcagaaga taacgacaaa aaatggcgtt tggtaataga ctttcgtcag      3060
     ctaaacaaaa gaatattacc agataaattc cccttgccaa gaattgatag cattttggat      3120
     caacttggta gagcgaaata ttttagtaca ctggatttga tgtcaggttt ccatcaaatc      3180
     cccttagaag aaaactcaaa aaagttcaca gcattctcaa caaattctgg tcattaccaa      3240
     ttcaaacgac taccattcgg attgaacatt agtccgaata gttttcagcg aatgatgacc      3300
     atcgctatgg ctggattaac cccagaacgt gcatttgtct atattgacga tattgtggtt      3360
     attggatgtt ctttaaaaca tcatttgcaa aatttaagaa ctgttttcga aagattaaga      3420
     aaatacgaat taaaattgaa catttcaaaa tgcaaatttt ttagaacgga ggtcacatat      3480
     ttgggccata agttaacgga taaaggaata ttacctgacg aagcaaagta tgcaacaatc      3540
     aagaattatc ctgttcctaa aaatgtcgac gatgtgcgaa ggttcgttgc tttctgcaat      3600
     tactatcgca aatttgtcga aaatttttca caaatcgcca atcctttgaa taaacttctt      3660
     aaaaagaata ctaaatttat ttggacatcg gaatgccaac atgcattcaa cctcttacga      3720
     cataatttga tgtctcctag gattctacaa tatccagatt tttcaaaatc atttacatta      3780
     acgaccgacg catctgatat tggatgtgga gccgtcttgt cacaaaccac agaaacagga      3840
     gagcaaccaa tagcttttgc aagcaaaacc tttattccgg cagagaaaaa taaaccgact      3900
     atactcaaag aattgttagc tatacactgg gcgataaatt actttaaacc gtacctgtat      3960
     ggcaaacgat tcactgtaag aaccgatcat agaccactag tgtatctttt tgggatgaaa      4020
     aatcctacat caaagttaac cagaatccga atcgaattag aagaatttga cttcgatgtt      4080
     gtatatataa agggtaagga aaacgtagca gctgatgcgc tttcgcgaat agttactacg      4140
     tctgaagaat taagacaatc aaatatatta ttagtaaata ctaggtcaat gacccggaaa      4200
     aaggcgcaat taaagaaaat acaagaaaaa atccaagaag aaataaaaga gattgatcac      4260
     ctctcagttt atgaaaccga acgtcctacg gaaacgagaa aaatgatgaa actgtcgaca      4320
     gccgtagaga acaacacaat gaaatttatg atatggaaaa aagataataa aacacttttt      4380
     gcacaagtgc atcaagatgt tcgaaatgga agtcatgcat tagagcatgc tctttcagaa      4440
     attgaaaaaa ttgccaaagg atttaaaata caaaaattag caatgtctgc agacgattat      4500
     aatttcacat tggtaccaat gaacttattt aaaataatag cgcataaaac tctaaaacaa      4560
     ttacaaatta taatttataa agagcccctc tttgtcaata gtaaagatga tattttaact      4620
     atattaaata accaccacaa cacaccactc ggaggtcatg ttggtcaaca tcgcttgtat      4680
     ctcagacttc gcgagaaata taagtggaga gatatgaaaa attctattgc ccatttcgtt      4740
     aaggcctgcg aattgtgcag aagaaataag attatcaaac atactaaaga accaatgaga      4800
     attacaacaa ccccttcaaa agctttcgaa attatttcca tagatacggt aggaccacta      4860
     ccgttaacca taaaaaacaa tcgctactgt gtaactatcc agtgcgattt gactaaatac      4920
     attgttgtta ttccgataca aaacaaagag gctaatacca tagctaaagc tttggttgaa      4980
     aattttattc taacttacgg taattttctc gaaatgcgtt ccgatcaagg tactgaatat      5040
     aataatgaag tcctgaacca aattagcaaa ttacttcaaa ttaaacaaac cttttcaacg      5100
     ccatatcatc ctcaatcaat cggttcattg gagaggaatc acagatgcct aaatgagtat      5160
     ttgcgatcat tcaccaatga gcaccaatcc gattgggatg aatggacaaa attttacgaa      5220
     ttttcataca atacaactcc tcatacagac cataacttta ccccattcga attagttttt      5280
     ggaaaaaaag caactctccc tcatgatact attcaaaaca ataatgaacc tatatacaat      5340
     tacgactcat acaaaagtga attaaaattt aaattaaaga aatctcatga gatagcaaaa      5400
     caaattttat tagaacaaaa aaaccgaaga aaggaacaat tcgataacaa tatcaatcct      5460
     atttctgtta acattaacga caaaatttat ttgaaaaacg aaaacagaag aaaattggat      5520
     tcattttatc ttggaccata caaaattaca aaaatagatg agccaaattg tgaaatagag      5580
     catatctact ttcaggtaaa attgtaacag tacacaaaaa cagaataatt aaagcataac      5640
     tctaagaata acttgaacta gagtaccacc gagcctaacc tctcaaaaaa ataataaact      5700
     caaaaaataa gtaaaagatg aggtaggtga aagttcccag ctatatgctg aggagtgcaa      5760
     aattcggtta gctacatcta ggttaattta tattttatga actaaggaca aaaaaaaaaa      5820
     aacgataact ctatcaaaca actatgtaag agataactgg agacacacat tcaaattttt      5880
     cgaatctttt agaataattt cattacatta cattattctc gtaaaggggg atgg            5934
//
ID   Gypsy-247_AA-LTR repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-247_AA_;
KW   Gypsy-247_AA-I; Gypsy-247_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-551
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1096-1096 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 551 BP; 172 A; 150 C; 101 G; 122 T; 6 other;
     tgtagcatac cagttggatc cataacccaa aatcaaaacc catgttgtaa aataacacac        60
     accaaccatc ctagcaccaa agcaatgacc aggcaattat gcaatcacaa acggcacata       120
     tggaagtcat tcaccaccga ggtgcatcgc tctatcgtct ccccccacct ccctcggtga       180
     ggtccggagc cggtkgcgkg cagckcgkag gagtcaaata acaagccaag ccaaagtgat       240
     cgcgacaaat aaccgatatt gcttagcacg caaagatgag catttttgtc acattgtcaa       300
     tccagttgtc tcacctackc acgaattact ctttccatca tgctcactkt agcaaactgt       360
     tccggacctc ggaaatgtat aaaaaccttt gaactgcaat aaacgtaacg attctgatac       420
     attagctcga cccaattgga cgtgtccaaa tttggccatc gaccactaat tgaagaaccc       480
     ttaagcgacc caactgacag acgtcaggat ggctatcgtt tagcaagtaa agtcaagttc       540
     gtcgcgattc a                                                            551
//
ID   Gypsy-248_AA-I repbase;    DNA;    INV; 4258 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-248_AA_;
KW   Gypsy-248_AA-LTR; Gypsy-248_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4258
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1097-1097 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3230-3688] - Integrase core
CC   'CAAC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1172..2032,2036..4096)
FT                 /product="Gypsy-248_AA-I_1p"
FT                 /translation="MRSCSTNLVSYCGTSIDVLGVLDARVEYGSGSVTLPL
FT                 YVVDSEKHPLLGREWLNAIPVDWSSVLQGPDAVNAISNAALSHTAALKEVL
FT                 GRFPKVFDDSIGKICDVQASLPLKKNAVPVFLKARKIPFNLQKTVEDELDK
FT                 LEAEGVLTKVNQSNWATPIVPVKKSQGRVRICGDYKQTVNPNLIVDRHPLP
FT                 TVDELFASLAGGRKFTKIDLVQAYLQLEVAPEDREILTLSTHRGLYRPNRL
FT                 MYGVASAPAIWQRQMEVILQGIEGVSVFLDDIKVTGPDDATHLQRLEVLRR
FT                 LDHRGIRVNKGKCEFFADQIDYCGYRIDKDGVHKMPNKVAAIQNMPQPKNE
FT                 DEVRSFVGLINYYGRFFQNLSTVLYPLNNLLKNDVPFEWTRQCDQSFKIVK
FT                 SQMQSEKCLVHYSPELPLLLATDASPYGVGAVLSHLMPDGTERPIQFASQT
FT                 LSRVQQKYMQVDKEAYAIIFGVKKFFQFLYGRKFTLITDNQAISKIFGEHK
FT                 GLPVMSAIRMQHYATYLQSFDYQIRFRKSADHANADAMSRIPLSQADPENM
FT                 IEEADVVELNQIETLPLTAAELAQATAEDQSVRNLIQGIKHGQPVDPRDRF
FT                 GVEQNEFSLQKGCLLRGIRVYVPPTLRRKVLQELHSTHFGTTRTKSLARGY
FT                 CWWVGLDRDIEEMVSNCAECQSVRPEPAKSRFHCWETPTQPFQRVHVDFAG
FT                 PFHDTYFFILVDAYSKWPEIKVCKSTTAENTVNMCREIFATFGIPSVLVSD
FT                 HGVQFTSETFQQFLRMNGVVHKMGAPYHPSTNGQAERYVQTFKQKLKSLKC
FT                 PKSEFNLEISNILLTYRKMLHPSTGQSPSMLMLGRQIRSRIDLMLPKNEPK
FT                 PVGDFAVRTFLDGDRVRVRDFLSRDKWKFGKIVEKVGKLRYAVRLDDGRIW
FT                 ERHIDHIVGVGANLREDLVNTPREEVNTERDVPTVPVPVSVATAAEPAGEV
FT                 ATGARPVVRPQPATPSTET"
XX
SQ   Sequence 4258 BP; 1091 A; 1048 C; 1201 G; 912 T; 6 other;
     caacagttct ggcgacgagg atgcggaatg cagaaaaccc cgaccgaaat gcatgctgcc        60
     gctgccgttg ctgccgccgg agaagggaag accctcctgc cgctgctgga gctccgccac       120
     caaactttgc gatcgacccc ttcgacaaga gaaagttgaa gtggatgcgg tgggtggagc       180
     ggctggagaa cgctttcscg atctacggag ttgccgaccc ggcgatgcgg aagaattttc       240
     ttctgcatta catggggtcc gagacgtacg acgtcgtgtg cgaccgggtt gcacccgaaa       300
     ccccccggca gaaaaactac gatgaaatcg ttacggcgtt ttggaaggat acttcagccc       360
     ccagccgctg gaaatcagcg agaatttccg gtttaagtgc cgccggcagg gcgacaaaga       420
     tgccgcttct gccgacgaga cggttgatca gtacctggtg gcgctgcggc ggatagccgt       480
     cacctgcaac ttcggtgcgt acctcgagac agccctgcgg aatcagctgg tgttcggcat       540
     caagcggaac gatatccgaa gccggctgct agagaggaga caactgaccc ttcaagatgc       600
     ccgggacata gccgtgagta tggagctatc ccgaaaagga ggtgccgaaa tcgaagggag       660
     ctcgggcaga caagaggtaa acgccgtgca cgatcgacag gacaaaaagg taacccagag       720
     aagaaaaata aaataaacac tgggggaaag tctttcacta aagtggggma aagtgcaagc       780
     gattcttctt gttttcgctg cggggaaaag tcgcactttg caaatacgtg caggcacaaa       840
     gatacagtgt gttcgttctg caaactaaaa ggacatctcg cgaaagtttg catgaagaaa       900
     gccgcctccg ggaagtccag taccagccgt gccgggaaca aatcattcgg ttcagacgaa       960
     ctatttgcac caatccggcg acggtgacgg ccccggacgt gtggaagtgc gggaagtgtg      1020
     taccgtggac acgaagggcg gtagcgctgc aaaacgcttc tgactggacg ttcgcgtgaa      1080
     cggtaaaaac attcgtttcg aagtggatac tggatcgccg gtcagtatca ttaacgcgaa      1140
     gtgccgggac agatacttcc ccgaatcaca gatgcgmagt tgcagtacaa atctcgtgag      1200
     ttactgcggt accagtatcg atgtactggg agtcctcgac gcgcgtgtcg agtatggaag      1260
     tggaagtgtt acgttaccgt tgtatgtcgt ggactctgaa aaacacccac ttctcgggcg      1320
     cgagtggctt aatgcgattc cggtcgattg gagtagcgtg ctccagggtc cggatgcggt      1380
     taacgcgatt tcgaatgctg ctctctccca cactgctgcg ttgaaggagg ttttgggacg      1440
     gttcccgaag gtgtttgatg attccatcgg gaaaatttgc gatgttcaag ccagcctgcc      1500
     gttgaagaag aatgccgtac cggtgttcct gaaggcgagg aagattccgt tcaacttgca      1560
     gaaaactgtg gaggacgagc ttgacaagct cgaagcagaa ggcgtcctta cgaaggtgaa      1620
     ccagagcaac tgggctacac ccatcgttcc ggtgaaaaag tcccaaggcc gtgtgcggat      1680
     ttgcggggac tataaacaaa cggtcaatcc aaacctgatt gtggacaggc atccccttcc      1740
     tacggtggat gaactttttg cgtcgttggc cggagggaga aagtttacca aaatcgacct      1800
     cgttcaggcc tacctacagc tggaagtggc tccggaggac agagagatat taacgttgag      1860
     tacgcaccgt ggcttgtatc gtccaaatcg gctaatgtac ggcgtcgcat cggcgccagc      1920
     aatctggcaa cgccagatgg aagtgatcct gcaagggatm gaaggagtca gcgtatttct      1980
     ggacgatatc aaggtcacgg gccccgacga tgccacgcat cttcaacggt tgamagaggt      2040
     tctacggagg ctagaccacc gtggtatccg ggtcaacaag ggaaaatgcg agttttttgc      2100
     ggatcaaatt gactactgtg gttatcgcat cgataaggat ggcgtccaca aaatgccgaa      2160
     caaggttgca gccatccaga atatgcctca gcccaagaac gaggatgaag tccggtcgtt      2220
     cgtcggactg atcaactatt acgggagatt tttccagaac ctcagtacag tactctaccc      2280
     tctaaacaac cttctcaaga acgatgtacc gttcgagtgg accaggcagt gcgaccaatc      2340
     gttcaagatt gtgaagagcc agatgcagtc ggagaaatgt cttgtccact actcgccgga      2400
     gctaccgttg ctgcttgcta cagatgcgtc accctacggt gtgggtgcgg tgctgagtca      2460
     cctgatgccg gacggaacgg agcgtccgat acaatttgct tcccaaacgc ttagccgagt      2520
     tcaacaaaag tacatgcagg tcgataagga agcatacgcg atcattttcg gagtgaagaa      2580
     gtttttccag ttcttgtacg gccggaagtt cacgctgatc accgacaacc aggcaatatc      2640
     caaaatattc ggagagcaca agggactgcc ggtgatgtca gccattcgaa tgcaacatta      2700
     tgcaacatac ctgcagtcgt tcgactacca gatccgtttt aggaagtctg cagatcacgc      2760
     taacgcggat gcaatgtccc gtattcctct gtctcaagct gacccggaaa atatgattga      2820
     agaggccgat gtcgtcgaac taaaccagat cgagacgttg ccgttgactg ctgcagagct      2880
     ggctcaggct acggctgaag atcagtcggt gcggaatctc atccaaggaa ttaagcacgg      2940
     tcagccggtg gatcccagag atcgcttcgg ggtggaacaa aacgagtttt cgctccagaa      3000
     aggatgtttg ctacgaggaa tacgagtata cgtgccaccg actcttcgga ggaaagtatt      3060
     gcaagaactc cactctaccc attttggaac tacccgtacg aagtccttgg ccagaggata      3120
     ctgctggtgg gtagggttgg atcgagatat cgaggaaatg gtttccaact gtgccgagtg      3180
     ccaatcggtc agaccggaac cagcgaaatc tagattccac tgctgggaga cgccgacgca      3240
     gccgttccag agggtccacg ttgactttgc gggcccattc catgacacgt atttcttcat      3300
     tctggtcgac gcttacagca aatggccgga gataaaggtg tgcaagtcga ccacagcgga      3360
     gaataccgtg aacatgtgcc gggagatatt cgctacattc ggaataccat cggtgctggt      3420
     tagtgaccat ggtgttcaat tcacgtcgga gaccttccaa caattcctgc gaatgaacgg      3480
     cgtcgtccat aagatgggag cgccgtatca tccatccacg aacgggcaag cagaacgcta      3540
     cgtgcaaacg tttaagcaaa agctgaagtc cttgaagtgc ccaaaatcgg agtttaatct      3600
     ggagatatcg aacatcttgc tgacctaccg gaagatgctg cacccttcca cgggtcaatc      3660
     gccgtccatg ctgatgctcg gccgtcaaat ccggtcgaga attgatttga tgctgcccaa      3720
     gaacgagccg aaaccggttg gagattttgc tgtgcgaacg tttttggacg gagatcgtgt      3780
     tcgagtgcga gactttcttt cgcgcgacaa atggaagttc gggaagatcg tcgagaaagt      3840
     gggcaaactg cgatacgccg tccgtctgga tgacggaaga atatgggagc gtcacatcga      3900
     ccacattgtc ggagttggtg cgaacttacg tgaagatttg gtgaacaccc ctagagagga      3960
     ggtgaacact gaacgagatg tgccaacagt tcctgttcct gtttcggtgg caaccgccgc      4020
     tgagcctgct ggtgaggtgg ctactggtgc aagaccggtg gtgcgccccc aacctgctac      4080
     gccatcaacg gaaactktcc ctgagtcgaa ccaggcgttt tcgaccccaa ggaccccaca      4140
     gtcggtccaa gaagtgccaa ctcagcccct caggcgttca agtcgagtga tcaaacctcc      4200
     ccaaaaattg aatttgtaat tttatcctat gaactttatt ttcaaaaaga gggagagt        4258
//
ID   Gypsy-248_AA-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-248_AA_;
KW   Gypsy-248_AA-I; Gypsy-248_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1098-1098 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 263 BP; 76 A; 61 C; 39 G; 84 T; 3 other;
     tgtcatacct ttgctacact tcattgataw atgttgaacc atacctttct wmtgttacat        60
     acacctgaat atgtataact accttcccat acatacacct tgctccgcac gttttgacag       120
     ttcagtacag tcagccattg cataaatatt cttccccgcg tgcgtgagca tgtgctcatt       180
     aaattccctc aactaaatcg ttaagaataa aagatagtaa gtgttaaaac aaatagctgt       240
     tgtgtgtatt actcggccag tca                                               263
//
ID   Gypsy-249_AA-I repbase;    DNA;    INV; 7680 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-249_AA_;
KW   Gypsy-249_AA-LTR; Gypsy-249_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7680
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1099-1099 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3681-4106] - Reverse transcriptase
CC   Positions [5166-5642] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2787..6020
FT                 /product="Gypsy-249_AA-I_2p"
FT                 /translation="MQAPERGTVRKLRFSRLSVKQLSILRKKRVGSEPKPP
FT                 PAEPKLLSVNSSSYFQPASENLYPETPASYTITYPRANDNRPYISVDIYGI
FT                 TVSALLDSGSNLTLINDAVYNTVKPKKLFPLRDPPNLRTASGEALTVRGKV
FT                 YLPFSWNGVVRVVPTLVIPNLAINCICGMDFWKTFRIQPTVVGCATVEYTG
FT                 AEITPSPLRTPSVLSASEQKTIDHIKSLFIPARPGKLSTTPLAEHKIELAE
FT                 EWRKKPPVRQFPYVMSPKTQGLVSVELQRLLDAGIIEPSNSDWSLNCVPVV
FT                 KPHKVRLCLDARKINERTVRDAYPLPHPCRILGQLPKAKYLSTIDLSEAFL
FT                 QVPLEKASRKYTAFSVQGKGLFQYTRMPFGLVNSPATLARLMDRVLGHGVL
FT                 EPYVFVYLDDIVVVTETFEHHVQLLQEIARRLNRANLMINLEKSQFGVPEI
FT                 PFLGYLLSSEGLRGNPDKIRPIVEYERPTTITKLRRFLGMANYYRRFIPNF
FT                 SETCGPLSDLLKSKTKIIGWNEAAEGAFCRIKEQLISAPILGSPDFSREFT
FT                 IQTDASDVAVAGVLTQQQEDGERVISYFSRKLTTPQKNYHAAEKEALAALL
FT                 SIEAFRGYIEGYHFTLVTDSSALTHILKTKWKVGSRCSRWSLDFQQFDMTV
FT                 VHRKGKENVVPDALSRSIAVVQDSPTSVWYTSLMEKVTRRPDDYVDFKVED
FT                 GKLYKFIAVKNVPYDSRFEWKQVLPTEEVSGVLKQAHDDKFHPGFDKTLAL
FT                 VQQRYYWPKMAKDIRAYIQACSTCKEVKPSYVQTTPEMGKMRCASRPWQII
FT                 SMDFIGPLPRSRKGNQHILVICDYFSKWVMIQPVKKLDSSAMCVILKNQWF
FT                 YRNSVPEIIITDNGSSFVSKEFKELIDHFKITHWLNSRYHSQSNPVERVNR
FT                 SINAAVRSYVQEDQRIWDTKIPEVELMLNTSVHSSTGFTPYFITHGQELAE
FT                 QGSDHRLSRHGEELSAEDREERRKQMFTKIHEIVRKNLEKSHEVSRDRYNL
FT                 RNRTFAKSFTVGQLVYRKNMKQSSAAENYNAKLGRQYLPCKIKAKIGSSSY
FT                 ELEDLSGKNLGVWPAVHLKPG"
XX
SQ   Sequence 7680 BP; 2080 A; 1733 C; 1699 G; 2153 T; 15 other;
     attggcgccc aacagaaata ataagaaaag gtttccactt cactattgaa gtggaaccct        60
     tttcagataa gctccgggag gaattggaat cctttattcc aattgttctw ttatacagga       120
     tttattgtat tgagttgtat cgggataaga aagggataag tgaaagtgtt ttcttttcgt       180
     ggaatcgttc ggatgatgat aactgctgct gtaagtcgtt cttttccttt caattcatct       240
     ttacaaatta gcctttttat ctctttatag ctgaagaata aattaatctg aatagtagag       300
     ttaaataaat aattagtgaa atttatcttc atwattgcac agtggttcaa aattattatt       360
     tttttaattt ttattatttt ttttttattt ttaaatgttt ttgtgtctta cacagtggtc       420
     caaaattata attttttaat ttttatttta tttatttttt tttaaattta ttagtgccta       480
     gcttaatgat aaagcatwaa tatatgctta atttatttga atttttttgc tttttgtaca       540
     ttttttaaat tttttttagg aataagcttt gatttattgt tacttttttt gcatttttaa       600
     gcaaaaagta gcttttgatt tagtttatgg taggtttaga atttttgtaa atattttttt       660
     tgattgaatt tttattttta agcatttttt ttgattttgt tgtttattct caagtgagaa       720
     atggctgaat cacttgaaat ccaattcaca cacgctgtgg aaaagattcg ggagtggtac       780
     cacagcttaa gggtggacca cttgtcacct gaggagttgg actttgaatt aaaaattcgc       840
     tcgatcgtta ttcgggatga tcccacctac tctcgaagac gcaggagcct tcgggatctg       900
     atgaaaatag agaaagagga caaaaatcaa attgaagtag aattacaggt gaactgggag       960
     gagacaatcc agttctgtcg acaaaatttc gacgaattgt cggcaggcct acagcagaat      1020
     gacaaaaact taagggtgag gggacaagca aagcttttgc atttcggtca tcggatagtc      1080
     cttcttttga atcaggttag ggattcgggg gaaacagaaa gcttcctcaa ggaaatgctt      1140
     gttgatgtgg tgaacctcct gaagcagtat ttccacactg aaacaactga acctgaatct      1200
     cataatcgag agggactgga ggatcaaacc ttaatggact tgttccgtac tgagcttgtt      1260
     cctgatgccc atccccgatc gattgcagat tcaggtacag tagtttctgg tgtgaatact      1320
     acttcagaaa atacttcggt ggcttctcgg tttgaaggca gtgactgtgt gcgctcttta      1380
     ctagctcgca ttaaagagtt agaagcggag atggctagaa tgggaagaca gtgtgaggaa      1440
     gagtctcaac gcaggsaatc cgagctccct agtggaagtc gacagccagt ggtgagtgtg      1500
     ccgctggcta gtcaagctcc tccaactctt cattcctctt tcccctctct tccgatatac      1560
     tcgaaccttt cacagggtca gagttcttcg ggggcggtcg atccttctag gccgatcact      1620
     agtgtaacct tctcgttacc gcaaagccat ctctctacac agccgcagcc tccttcaacc      1680
     tggcatagct atctgcagaa caatccttcc attcatccgc aaaccaccaa tccgtggtta      1740
     ggatatccag ctgcaagttc agtaccattt tcaaatccga gcctcgggac ttcggtcttg      1800
     aatagtgggc agttttcgaa tccgtggcta gggaatccga ttccaagcgt cagtcagcca      1860
     gcttatccat ggaacaatcc tatagggact tcggcttcaa ctacaactgc ctttccttca      1920
     tctagcttcg ttcctttcaa tccagttccg tctggcaatc aggtgcgtca caccttgccg      1980
     gtgtccaagt ggacaatcgc taaatatgat ggtgaagatc aagggctgaa gttgaaccag      2040
     ttccttggaa tggttcatgc gatggctgtt gctgaacatg cttcggaagc tgaactgttt      2100
     gattcagcga ttcacctttt caaaggtcca gcactgcaat ggtacatgac catgcgcgct      2160
     acaggccggt tagtcaactg gcagcatttg gtgctagagc ttaggcggac gtttatgcat      2220
     cccgacctag acaccttaat aaaaatgaag gtttatcagc gtcagcaagc acgccatgaa      2280
     accttccttc aattctacca cggtatggaa gagctttttg ggacaatgag tgttcctttg      2340
     ccggaacacg aaaaggtcca aatccttctt cagaatatga ggattgatta taaaaagcag      2400
     ctcaatttca tccctattgc tgaccttccg acacttgtgt ccgcaggcca gaaaatagat      2460
     gccgtaaact tctcagtcta caacaaagtg tttggacctg agaagtcggt taacgcggtt      2520
     gagttttctg aaccgaaaaa gggtacatct caggataatc ccaacaagcc acccactcca      2580
     catcaacaag cctcgtcgag aaattcgaag gcccacactc ctcctacaca gaccaatcag      2640
     agtcgtaagg gttcccaaac cggaaccgat actcctcgcg gaccagcacg ggcaccaacc      2700
     actttggaag acctgatcga gtctcatcaa ccattatcaa gccgacattg cttcaattgc      2760
     ggcaagtttg ggcatcggat ggaccaatgc aggctcccga gaggggtact gtgcgaaaac      2820
     tgcggttttc gaggctatcc gtcaaacaac tgtccatact gcgtaaaaaa cgcgttggta      2880
     gcgagccaaa accgccgccc gctgaaccca aactactaag cgtaaactct tcttcgtatt      2940
     ttcaaccggc ttcggagaat ctttatccgg agactccggc gtcgtacacc attacgtacc      3000
     cacgtgcgaa cgacaaccgt ccttacatat cggttgacat ttatgggatt actgtttctg      3060
     cccttctaga tagtggaagt aatctcactc tcatcaatga tgcagtgtac aatacagtca      3120
     aaccaaaaaa actgtttcca ctgcgagacc cacccaacct gcgaacggcg agcggagaag      3180
     cgctcacggt ccgtgggaag gtctatctac cattttcatg gaacggtgtg gtccgggttg      3240
     tgccgactct cgttattcca aacctagcca tcaattgcat ttgcggaatg gatttctgga      3300
     agaccttccg gatccaaccc accgttgtag ggtgcgctac ggttgaatat accggggcag      3360
     aaatcactcc gtctccgttg cgtacaccat ctgtcctctc tgcttccgag cagaagacaa      3420
     tcgatcacat caaatctctt ttcattcccg ctcgtccggg gaaactgtct accactccac      3480
     tggcggagca caaaattgag ctcgccgaag aatggcggaa gaagcctccg gttagacagt      3540
     tcccgtacgt catgtctcca aaaacacaag gtttggtgtc cgtagagctg caaagattgc      3600
     tcgacgcggg tatcatcgaa cccagtaact ctgattggtc actaaactgt gtaccagtcg      3660
     tcaaacctca taaggttcgg ctctgtttgg atgcgcgcaa gattaacgaa agaactgttc      3720
     gtgatgctta ccccttgccg cacccctgtc gaatcttagg ccaacttcca aaggcgaagt      3780
     acttatcgac gattgatttg tcggaagctt tccttcaagt tccacttgaa aaggcttcgc      3840
     ggaagtatac ggcctttagc gtgcaaggta aggggttgtt tcaatacacc agaatgccct      3900
     ttggccttgt caatagtccg gccacattgg ctagactgat ggaccgggtt ctgggccacg      3960
     gtgtattgga gccttatgtc ttcgtttacc tcgacgatat cgtcgtggta acggagacat      4020
     ttgagcatca cgtccagcta cttcaggaaa ttgcacgcag attaaacaga gccaacctaa      4080
     tgataaacct ggagaagtct cagtttgggg tgccggaaat tcccttcctt gggtatcttt      4140
     tgagttctga gggtcttcgt gggaatcctg acaagattcg acccatcgtc gagtacgaaa      4200
     ggcccaccac gatcactaaa ctcagaagat tcctagggat ggcgaattat taccggcggt      4260
     tcatcccaaa cttcagcgag acttgtgggc ctttgtcgga tctcctgaag tcgaaaacca      4320
     aaatcatcgg ctggaatgaa gccgcagagg gggcgttctg tcgcatcaag gagcagctca      4380
     tcagtgcacc gattctgggt agcccggact tctcccggga gtttactatc cagacggatg      4440
     ctagcgatgt agctgtcgcc ggagtcctca ctcagcagca ggaggatggt gagagggtga      4500
     tatcctactt ctcccggaag ctcaccaccc cgcagaagaa ctaccacgct gctgaaaaag      4560
     aggctctggc cgctctcctc tccatcgaag cattccgggg ctacatcgag ggctaccact      4620
     tcaccttggt gacggattcg tccgccctca cccacattct taaaacgaag tggaaggtcg      4680
     gttctcgatg tagtcggtgg agcttggact ttcagcagtt tgacatgaca gtggtacacc      4740
     ggaaaggaaa ggagaatgtc gttccggatg ccctgtcgcg tagcattgct gtagttcaag      4800
     attcaccaac ttcagtatgg tacacttctc tgatggagaa ggttacccgc cggcctgacg      4860
     actatgtcga tttcaaggtc gaagacggca aactttacaa gtttatcgcc gtcaaaaatg      4920
     tgccatacga ctctcggttt gagtggaagc aagttctgcc aaccgaggaa gtttccggag      4980
     tgcttaaaca ggctcatgat gataagtttc atcccggttt cgacaagacg ctagctcttg      5040
     tccaacagcg ctattactgg cccaaaatgg ccaaagatat tagagcctat atacaggcct      5100
     gttcaacctg taaggaggtc aagccctctt atgtccaaac taccccggaa atgggtaaaa      5160
     tgcgctgtgc ttcccgaccg tggcagatta tttccatgga cttcattggt ccactgccac      5220
     gtagtcgaaa gggaaatcag catatcttag tcatttgtga ctatttttcc aagtgggtaa      5280
     tgattcagcc ggtgaagaag ctggatagtt cagccatgtg tgtgattttg aaaaatcagt      5340
     ggttctatag gaattctgtc cctgaaatca taatcacaga caacggcagc tctttcgttt      5400
     cgaaagagtt caaggaactt atagaccact tcaagatcac gcactggctg aactcccgct      5460
     accattccca gtcgaatccc gtggagcgcg tgaaccgtag tataaacgcg gccgtccgca      5520
     gttacgtcca agaggaccag cgaatatggg acaccaagat cccggaggtg gagctgatgc      5580
     tcaacacaag tgttcactcc tccacgggat tcacaccgta tttcattacc cacggacaag      5640
     agctagcgga acagggatcc gaccatcgtc tttctcgaca cggtgaggaa ctttctgcgg      5700
     aagacaggga ggaaagacgc aagcagatgt tcaccaaaat ccatgagatt gttcgcaaga      5760
     accttgaaaa atctcatgag gtttccaggg atcgctataa cctgcgaaac cgtactttcg      5820
     ccaagtcgtt cacggtaggt caattggttt accgaaagaa catgaagcag tcttcggctg      5880
     ctgaaaacta caatgccaaa ttagggcggc agtatttacc ctgtaaaatc aaggccaaga      5940
     ttggctcgtc ttcctacgag ctggaagacc tcagtgggaa aaatctgggg gtttggccag      6000
     ccgtccatct caaacccggg tgaacatctg catcgccttt cttccctgac ctccaatctc      6060
     gaatccccta acaaggattc aataaatcgg tgaaaatatc cgaatactca cctgtttgct      6120
     ttgttktgtt tctsattcat tcatgcctgt ccgtcgtcgt cgtcagaacc ataatatttt      6180
     gattktcctc ctcgtcgaca twgttcgcat catccgcttc tttttcctct ttcttccgtt      6240
     ccccatgttt acccttttaa caagggtcga actaagggga atgtttaccw ttttcataac      6300
     gcctcccmgg tggcggattt cgatcgatta gttcgtcggt ccaaccgagg ggtctacagc      6360
     gatatcgcta ggcttcctca aaattattta gaatagggta ccctagaatc ttagtttagc      6420
     atatatagcg tgtgaatgaa ttgtatgttg tcttgggaaa tmaagtttta tcccagacaa      6480
     ccgtatgaat gagatgaatg tatgaatgaa tttgtatgaa aggtgggggg aatgaatgtg      6540
     tgaatgaatg cgtactttta atcccgagaa aatctcggtg atgattmtwa ggaagagatt      6600
     tccgaaaagt ttattttctc tcctaatagt agattagttt taaaataggt tataattgag      6660
     ttaatttaaa ataaaagttt aatttataaa gatttgatga tgagaggatg gatmagaacg      6720
     cttttattct gacgaacctg tattctggaa ggctgtattt tccagattca cttattgttt      6780
     cgatacaact caatcattgt cctcttattt cagcttatgg taattagaga gtacagtggt      6840
     caggctcgct ctgcaatttt atgtaatttg aaggaaaaga gcctcctttc gtgatcaatc      6900
     attgcttcaa attatcactt aaattgcagg ggagagagcc actgtaggag aactagcttt      6960
     cagtgaatct atcacgaatt cgggaagtag gactcctgct tctctaattc gatcgtggat      7020
     cgtggaagtt cgcctctccc ggtaattcct ttgatcttaa acagtgacta ctaatctcga      7080
     aaagaagagc tcccaccgag gaawcaatca cttttccaga ttggaagtca ccaacaagag      7140
     aaaaaggttt actgcgaact aattacccta agaggaaata agattcgtag tttggcagcc      7200
     agactctatg gctgaaagtt aggtgatttg gtggaaaaga gctcctctct gcacggaaaa      7260
     atcattccac taaatcaaaa taaccttcag ctaaaagaga gctgccaaaa taagaactcc      7320
     ttacttgacc ttctccttct agtggacagt ctctattatt aagtgttaag tgattttgtg      7380
     gaaaagagct cctcttcatg gacaaatcat tgcacaaaat caatctaaca cttaacaaga      7440
     ggagggccac actgaccttt ttccctgact gatttcctct ccagtggaca gtctctatca      7500
     ttgaatgtaa agtgatttcg cggaaaagag ctcctgtacg gaaaaatcat ttcgcaaaat      7560
     caaattacat tcaatgagag gagggccact aaaatccatt atcctaaatt cccattccat      7620
     acttctctta taaaaaaaaa aaactacaag tttttttttt attccgaagt gggggatgaa      7680
//
ID   Gypsy-249_AA-LTR repbase;    DNA;    INV; 1309 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-249_AA_;
KW   Gypsy-249_AA-I; Gypsy-249_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1309
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1100-1100 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1309 BP; 352 A; 323 C; 275 G; 352 T; 7 other;
     tgtaacctcc caaaaaggtt acatttgttt tttattgtaa atattccttg taaatagttt        60
     tcttttgatt attaccattg ctattattat tattggtatt attattttca ttatttttat       120
     tatcatttct actattacta ataaggtagc aagaataatc aagaaaatga atttaagaac       180
     tttaaagaaa acaagaattt gaattaataa aaacaacacc gattttccaa ttcccatttc       240
     ccttgaacat ccctattccc cacctcccgt aacggctgtc acatccagcc acacagccac       300
     agttcagcaa aaccgtccgc gtcattgtgt tggtgaacgc tcgggacacg actacgatga       360
     cgatgacgaa gacggctagg agataaaatt gtttgtcacc gatggatctg cctctagaag       420
     gtgaacagtt ttcatcaccg aaagtggtgc gcgtttttaa ccgctctgat ttctccccat       480
     agtgaaccaa aagtcgggcc taaatcggcc attgtagtgc cagttgtgcc gcgtgaaaag       540
     ttgccgtgac tccgtcggtg gtgtttgccg cgataaagca ccggttccac cgttactcgc       600
     cggaaaaagt gaaggccacg aagaagcacc ggtttcgccg taaccagccg gggaagtgaa       660
     gtgccacaag tctccagtgg gccataagtg gtccgtgggt cccatcggtg tgagcgacgg       720
     aagccatcag ggtgtgtgac gtccaagttg cccctgcaca acaagatccc tcccatcgga       780
     gttctccgaa cgaagccggc gtgccagcag atccctcttc gccattccaa ggggtgccca       840
     gttttgagga agtaccacga ttgaccggat gatgttcgtc ttcgtctcaa ggatagactg       900
     gatggaagga ggagcccgat ccctgcgctg tccagcgccg acttcagcca ccaatcaaca       960
     ataaacaagg tggcacagtg taatccgagt caaaatccct tcctatcact ttttgtgsaa      1020
     ttwgaaataw tgaaattata aaacgaacgt ctaaamtgta atactakcta ccttctttta      1080
     ttttcttatt gaatcgctaa gcccttattt ctcactcttc kctgttcggt ccaccttggc      1140
     aacgtagtgt tttccgacgt aggactacgt ccaggtaatc ttttataagg gaagtcgttc      1200
     cgcccatctc tcccaatttc ctcttggagc cagcataaac gaccctgagg cccaggacaa      1260
     aagcccggtt ggggacaaca gaggttccca acctawagaa tctctaaca                  1309
//
ID   Gypsy-24_AA-I repbase;    DNA;    INV; 4289 BP.
XX
AC   supercont1.380;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_AA_;
KW   Gypsy-24_AA-LTR; Gypsy-24_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.380; Positions  569267  564979.
XX
CC   Positions [3378-3662] - Integrase core
CC   'GTTAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..2250
FT                 /product="Gypsy-24_AA-I_1p"
FT                 /translation="MMNPEFQKSLLDILQNQQKILDQLMQNQYSASSSSQQ
FT                 AVVSTQRNHNQEFLIESLSSGITEFTYDPENGVTFAAWFSRYEDLFIEDAK
FT                 NLDDAAKVRLLLRNISTVAHQKYISYILPKKPKDQNFEQTVSTLKIIFGRQ
FT                 ISLFNARYQCLQLSKSSGDDFYTYAGVVNQKCEEFKLNEVTSDQFKNMQQT
FT                 VCAINRSNPSKSTNSEECNDVPRSPCWRCGNMHYSKYCSFINHECRTCQKT
FT                 GHKEGYCACFEKVGKKQKENGKQRFNHRMQAQAQGVFSINQIGLMDRRKYI
FT                 TVQINGVSTKLQLDCASDITIIPEDVYVQLGSPAGRAPSIDAVNASGEDVG
FT                 LSREVECNVSFNGVTKKRRYFVTTVPALSLFGIEWIEMFNLWNVPINAVCN
FT                 NVKLQSLPQTEGFIEELKKEFASIFSDELGLCKKKVSLTVKSGIKPIFRLK
FT                 RPVPYASTAKIEAELERLQKLGIINPVPYSDWAAPIVAVNKPNGRVRICAD
FT                 YSTGLNSALEPHQHPLPLPQDIFAKLANKKVFSQIDLSDAYLQVEVEPSSR
FT                 KLLTINTHKGLFEFTRLSPGVKTAPGAFQEIVDNMIAGLEGVSGYLDDLIV
FT                 ASDSVEEHIHHLECLFARIREFGFTLKIEKCNFFMSEIKYLGFIVDCQGIR
FT                 PDPEKVRAISEMPAPHDVTSLRSFLGAVNYYSKFVRGMHELRQPMDALLKK
FT                 DVKWNWSQACQQSFNQFKQILQSNLLLTHYDPRLEIIVAR"
XX
SQ   Sequence 4289 BP; 1378 A; 892 C; 918 G; 1101 T; 0 other;
     gtttttggcg acgaggatta cggaattttc atgatgaatc cagaatttca aaaatcgcta        60
     ttggacattt tacaaaacca acaaaagata ctcgatcaac ttatgcaaaa ccagtattct       120
     gcaagttcat caagccaaca agcagtcgtt tcaacgcaga ggaatcataa ccaggaattt       180
     ctaatcgagt ctctgtccag cggtattacg gagttcacgt acgatccaga gaacggcgta       240
     acatttgcag cgtggttctc gagatacgag gatttattca ttgaagacgc gaagaatttg       300
     gatgatgcag cgaaagttag actcttgctt cggaatatta gcacggtggc tcatcaaaag       360
     tatatcagct acattcttcc aaaaaaacct aaggatcaaa actttgaaca gacggtttct       420
     acactgaaga tcatttttgg aaggcagata tccttattca acgccagata ccagtgcttg       480
     cagttgtcga agagttccgg agacgatttt tacacatatg caggagttgt aaaccaaaaa       540
     tgtgaggagt tcaagctgaa cgaagttaca tcggatcaat ttaaaaacat gcagcaaaca       600
     gtttgcgcaa tcaatcgttc aaatccatcg aaatcaacaa atagtgaaga atgcaacgac       660
     gttcctagat caccatgttg gcgatgtggg aatatgcact actcaaaata ctgttcgttc       720
     atcaaccacg agtgtcgaac gtgccagaaa acaggacata aggagggtta ttgtgcttgt       780
     tttgagaagg taggcaagaa acagaaggaa aacggtaagc aacgattcaa ccacagaatg       840
     caagcgcaag cacaaggagt gttctccatc aatcagatcg ggctaatgga cagacggaag       900
     tacatcacag ttcaaatcaa cggagtgtca accaaacttc aactggactg tgcctctgac       960
     atcactatca ttccagagga cgtctacgtt caattaggtt caccagccgg aagagcacca      1020
     tccattgacg cggttaatgc aagtggcgag gatgttggtc tcagtcgaga agtagaatgc      1080
     aatgtttcgt tcaacggggt aactaaaaaa agacgatatt tcgtaactac agtaccagca      1140
     ttgtctttat ttggtatcga gtggatagag atgttcaacc tgtggaatgt gccgatcaat      1200
     gctgtgtgca ataatgtgaa gctgcagagt ttacctcaga cggaaggatt catcgaagag      1260
     cttaaaaaag agtttgcaag cattttcagt gatgaactcg ggctatgtaa gaagaaagta      1320
     tcgctcacgg ttaaatctgg catcaaaccc atctttcgtt tgaaacgacc tgttccatac      1380
     gcatcgacag ccaagattga agcagaatta gaacgtcttc agaaactcgg aatcatcaat      1440
     ccggtgccat attcggattg ggcggctcca atagtagcag tgaacaagcc aaatggacga      1500
     gtgagaatat gtgctgatta ctcaactgga ttaaattctg cattggaacc gcatcaacat      1560
     cctttaccgc tacctcaaga tatttttgcg aagctagcta ataagaaagt tttcagtcaa      1620
     atagaccttt ccgacgctta tctacaggtt gaggtcgagc cgtcatcgcg taagctactt      1680
     acgatcaata ctcacaaagg acttttcgag ttcacaagac tttctcctgg cgtcaaaact      1740
     gctccagggg catttcaaga aattgtggat aacatgatag ctggtctcga aggagtaagt      1800
     ggatacttgg acgatctaat tgtcgcaagc gattctgttg aagaacacat tcatcatctc      1860
     gagtgcctat ttgctcgtat tcgtgagttc gggttcacgc tcaagattga aaagtgtaac      1920
     ttcttcatga gtgaaatcaa gtacctaggc ttcatcgttg attgtcaagg aattcgtccg      1980
     gatccggaga aagttcgtgc catcagtgag atgccagcac cacatgatgt gacttcattg      2040
     agatcatttc tgggagccgt gaattattac agcaagtttg tacgaggaat gcatgaacta      2100
     agacaaccca tggatgcatt actcaagaaa gacgttaagt ggaactggtc acaagcttgt      2160
     caacagtcat tcaaccaatt caagcaaatt ttacagtcaa atctattgct cacacattac      2220
     gatccaaggc tcgaaataat tgttgcccgc tgatgcctcc atgagtggcg tgcgagctgt      2280
     tttgtttcat cgatatccga atggaaagca tcaaagcagt ttgtcacgct tcacgaatct      2340
     catgattcaa gtttaatagg atacatccta gtgatataaa agaaccttta gccctcatct      2400
     tttgctgtta cgaaattcca tcggatgcta tttggtcgtc aattcacatt acagacggac      2460
     cataagccgc tgatttccat ttttggctca aaaaagggta tcccggttca cacagccaac      2520
     cggctacagc gttgggcttt aactatgctg ctgtataact tcaaaattga attcaagtca      2580
     acagaaagtt ttggttatgc tgatttttta tcaaggcttc agcattcaag acctgaagag      2640
     gaatacgtta ttgcaagtac tcggatggaa actagcatta gaaatattca agccgaatct      2700
     ctttcaacgc ttccaatcac acatccaatc agcattcaag acctgaagag gaatacgtta      2760
     ttgcaagtac tcggatggaa actagcatta gaaatattca agccgaatct ctttcaacgc      2820
     ttccaatcac acacgaaatg gttgtagctg ctaccaagaa agataaaaca cttcaaaatg      2880
     tacttcaaca gataaacatt ggatggtcaa caaacaattt aacacaagag gtcaaatcat      2940
     tcaaaaaccg tcaagaatcg ttatacagct caggcgattg tataatgttg tccgatagag      3000
     tggtaattcc cggagtcctt cgtactgcag ttctgaagca actacacgcc gggcatcctg      3060
     gtatggaaag gatgaaagga atagcacgta gctatgtatt ctggccaaac atcgatgtgg      3120
     atattgaaaa ttacgtccgt acttgtaccc gttgtgcagc agtggccaaa tgtccagtaa      3180
     aaacaacgct ttcatcatgg cctattccag cgcagccttg gtcccggatt catatggatt      3240
     acgctggtcc attcaagggc aagtattttc tggttatcgt cgacgcactt acaaagtggc      3300
     cagaaatata ctgtacaaat tccatgactg caaccgtaac tgtgaacaaa cttcgagaat      3360
     ctacagcacg tttctgacta ccagatgcaa ttatcaccga caatggtaca caatttgatt      3420
     ccagctcgtt cgagacgttt tgcaagaaga atggtattga acacatcaag attcctccac      3480
     accatcctca attaaatgga caagccgagc gcttcgtaga tacattgaaa agagcactga      3540
     aaaaaatgga tgaagacgga ctggaagaag cactccaaac gtttttgttc acatatagat      3600
     acactccaaa caaatcgatc aaagatatga agtcacctgc agaggccatg ttaggaagaa      3660
     aactcaagac gaatttggac ctgttgaaga aaccagcaca taaatcgttt cagatcaatc      3720
     atcagcaaaa ctttcaattc aatcgagcgc acggtgctaa agaaagaacg tttgtagctg      3780
     gtgacgaggt atatgcagag gtttacattc acaataagcg atactgggct tgcggaaaaa      3840
     tcattgaaaa gaagggtaac gtgacgtaca acgtgctatt ggatgatgag agaagaagcg      3900
     gattgattag gtcacacgca aatcaattac gacgtagata tggtggtaat ccagccaccc      3960
     cggaggaaga acaattacca gtccttatgc tgcttgaaga gtttggtatg tatgacgaaa      4020
     cacccgaaat tgaccaattg gatccagaat atgaacaacc attggaagtt cccgagttac      4080
     aggataatcg attggaaaac ccgccgttag atgattccga agtactcatc aatagtccag      4140
     ttgaattagc agagtatggc gacgcaatag aagcatcacc aacattaaca aatattgttc      4200
     tcccgaatcc atcacctgta gttagagagt cccgtatacg aaggtttcct gcatttttca      4260
     aagactacag tcttttctaa ggagggaga                                        4289
//
ID   Gypsy-24_AA-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   supercont1.380;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_AA_;
KW   Gypsy-24_AA-I; Gypsy-24_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-110
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.380; Positions  564978  564869.
XX
SQ   Sequence 110 BP; 41 A; 18 C; 13 G; 38 T; 0 other;
     tgttagcaag ccataattta taattaatta atcatagcaa gccttgtatc ctaggaaatt        60
     aaataaaaca ttctagtttt cgccttaatt cagtctagac gtatataaca                  110
//
ID   Gypsy-24_AnFu-I repbase;    DNA;    INV; 5204 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5204
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2909-2909 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           686..1675
FT                 /product="Gypsy-24_AnFu-I_1p"
FT                 /translation="MKKVSRSAVDERKSTVSGRKRKTVQSRVSTELVCRTG
FT                 ISSSELLRQAREIKNLPKKDPIMATQKLDLNLGVKIIKPYDGNAKHLASYI
FT                 ESVELFKEYSEGVDESHFLKFLRTTLTGVAHGVITPAKTVEEALQLLKEKF
FT                 AVKMTPLAVEREMETKKQGKRDISEYGSEIEALSAKLAAAHVTAGNFTSEG
FT                 AAKTIVETTTIRAFIGGLADPTTKFFLKARNPPTLSKAISDALECSTEFQS
FT                 KDENHEAMWHNQVNWNRRPFLRSRSGYRRPLGYRYQRGNYRGNARTFRGNP
FT                 SYMSNEQNPSTTKQHENFSADNGETDEMEDVNVLDLFR"
FT   CDS           1656..5168
FT                 /product="Gypsy-24_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MCWTYFVDFDIVRTVKIFGYLFSRKLQFIVDSGASCC
FT                 IIARRCVPNNVYINPHTNFIVRGLNGNSHAIGWIDTKITIDNVNYPIQFHV
FT                 LNDLPNDITGLIGTNFLLEFKAKVDFSTMNISFTPPNYFNNLHIPSRTELI
FT                 TYIDTEATEMCVVISEQISNHVFVANSIAKPLNGKLPVKVINFSNKPVCIN
FT                 NFQPTVQPAEKYNIIEFKPQEINSERGKQLLRELKLSHLAENEKQTISKIC
FT                 LKYNDVFCLSTDTLKASSCLEASIKTKPNMAPSYSKQYRLPYYQKSETERQ
FT                 VKKMLKENIIEPAQSEWNSPILLVPKKSSNDKKKWRLVVDYRKVNSVIQDD
FT                 KFPLPNIEEVIDALAGAKYFSHLDLSQGYYQVQLKKEDRPITAFTTATGQF
FT                 QMTRLPMGLKISPSTFSRLMTIALSGLNQEKCLVYLDDIIVFGKNIHEHNQ
FT                 NLIATFTRLQSVNLKLNPEKCHFLKKELVYLGHYISNEGIKPDPAKVGSIK
FT                 NWPVPTNADQVKRFIAFANYYRKHIPNFAKTCMPLNVLTRKNVPFEWTKEC
FT                 EKSFNSLKIQFMNPPLLDFPDFSESNRFVLHTDASGRAIGAVLQNSNGKPI
FT                 AFASRALNKAELNYGTIEKELLAIVWATKHFRPYLFGKAFDIFTDHRPLVY
FT                 LFTMTDPSSRLTKFRLALEEFDFVIQYTKGADNVVADALSRMSSDELKGLN
FT                 HNVILASTRSKTIKSHDNNSIKNIPMSGVPAPKTVFVELVICPEIKEVKTT
FT                 VEQIKIPLTQSIIHLRRILQDILNFKKQLGKEVILVMRKNDHKTKNLLENI
FT                 KLLNMKNLPKIIVIGKDIKIIKEDEKELKILIMNDHHILPTAGHAGINRML
FT                 NTIKQRYTWKGIDSDVRNMVKHCKECQVNKKIVEPKVPLQITSTASEPMQK
FT                 IYLDLVGPLVKAEGYEYILTTQCDLTKFMTATAITDKKTETVAKAFTNSVL
FT                 LKYGIPESICTDRGTEFMSKLFEELCKCLHIRKLNSTAYHHESIGALENSH
FT                 KMLGNFLRIYCKGNPLAWKEWIQFYEFAYNNTVHSATGYTPFFLMYGRISN
FT                 IPSHYLNDQKREMHYDFDNYVKTLQAKLIISHKEVRDRLINNKHNVKFKYD
FT                 QSCKIKTLEPGSLCLLKNETANKLGQQFSGPFTVVRDCDPNVELKIGRTTE
FT                 LVHKNRTKKFCK"
XX
SQ   Sequence 5204 BP; 1906 A; 961 C; 1020 G; 1317 T; 0 other;
     tggcgatcct gccaggagcc cgatcgtaag aaagtggata taagagtcaa gaaaagtgca        60
     agtacaaagc agttttatta cacagtgcac gggtgtgaag tagggaaaaa gaaacctaaa       120
     tggaaaggca gctaaatcgc cctaaacgct atgcattatc cctgctccat tagtgtagtg       180
     cggaaaacat aagctgcatg atcatgctcg aataaatgct gatccgacta gcataaaaat       240
     cagtgcagtg gaactaaaat cttggttatg atgatcatgg acaaacgctg aaacgactag       300
     aataataacc tgaacatcac gctataaagt aaaccaatga aatcagggta gtgcaactaa       360
     aatcttgctc gtaatgttgc gtgaacaaat gctgaagcga ccagaaaaat aacccgaagc       420
     ttacgccttg aagaaaacga accgaatcag tgcagtgggg gtacggtgca acaatattcc       480
     tgtttgttcc tgagaaaaaa aaaaatactc caacaacaac aacagcacac aaattcgacg       540
     agacaatacg aagtaccgtc ttttcaacgt cacggatgca gtatagttcc tggaaaggcg       600
     tcataaccag cctgctctgt ttcaacaacg actcgctttg atacaacgag acaacgacaa       660
     cgccgaaacg aagctgcgca gctggatgaa aaaagtaagc cgtagcgctg tggacgagcg       720
     gaagagcacg gtcagcggaa gaaaaaggaa aactgtacaa agtagggtga gtacagagtt       780
     ggtgtgcagg acgggtataa gttcttcgga attgttaagg caggctaggg aaatcaaaaa       840
     cttacctaaa aaagatccaa tcatggcgac acaaaaacta gatctaaatt taggagtaaa       900
     aatcataaag ccatatgatg gcaacgcaaa acatctggct agctatattg aaagtgtcga       960
     actattcaag gaatattctg aaggcgtgga cgaaagtcat tttttgaaat ttttgcggac      1020
     cacgttaaca ggcgtagccc acggagttat tactccggca aagacagttg aggaagcgct      1080
     tcagctattg aaggaaaaat tcgcggtaaa aatgacacct ttggcggtag aacgcgaaat      1140
     ggaaacaaaa aaacaaggga agcgtgatat ctcagaatat ggatcagaaa tagaagcctt      1200
     gtcagccaaa ttagcagcag cccatgttac tgctgggaat ttcacttcgg aaggtgcagc      1260
     aaagacaatt gtagagacaa caacaattag ggctttcatt gggggattgg ccgatccaac      1320
     tacaaaattt tttctaaaag ctcgaaatcc acccactttg agtaaggcca tttccgatgc      1380
     tctggagtgt tccaccgaat tccagagtaa agatgaaaac cacgaagcaa tgtggcataa      1440
     tcaagtaaat tggaatagaa gaccatttct gcgaagtcga agtgggtatc gaagaccgct      1500
     tggctatcga taccaaagag ggaattatag agggaacgct cggacattcc gtggaaatcc      1560
     gtcgtatatg tctaatgagc aaaacccaag caccacaaag cagcacgaaa atttttcagc      1620
     tgataatggt gaaacagacg aaatggaaga cgtaaatgtg ttggacttat ttcgttgact      1680
     ttgatatcgt tagaacagta aaaatatttg gctacctttt ttcaagaaaa ctccaattta      1740
     ttgtagatag cggagcatcg tgctgtatta ttgctcgccg ttgtgtccct aacaatgtat      1800
     atataaatcc tcatacaaac tttattgtaa gaggccttaa tggtaattcc catgcgatag      1860
     gatggatcga tacaaaaata acaattgata atgttaatta ccctattcag tttcatgtat      1920
     taaacgattt acctaacgat ataaccggat tgattggaac taacttctta ttggaattta      1980
     aagctaaagt tgatttttct actatgaata tttcgtttac tccaccaaat tattttaaca      2040
     atttacatat accatcaaga actgaattaa ttacttacat tgatacagaa gctacagaaa      2100
     tgtgcgtagt aataagtgaa caaatatcga atcatgtttt tgttgctaat agtattgcga      2160
     aacctctaaa cggaaagtta ccggtaaagg taatcaactt ctccaataaa ccagtttgca      2220
     taaataattt tcagccaaca gttcagcccg ctgagaaata taatataata gaatttaaac      2280
     cacaggaaat caattcagaa cgtggcaaac agcttctccg agaattaaaa ttgtctcatc      2340
     tagcggagaa tgaaaaacaa acgatttcaa aaatttgctt gaaatacaac gatgtatttt      2400
     gtctcagtac ggacacactt aaggcatcta gttgccttga agcctctata aaaacaaaac      2460
     ctaacatggc accaagctat tcaaaacagt atcggttacc atactatcag aaaagtgaaa      2520
     ctgaaaggca agtaaagaaa atgttaaagg aaaacataat tgaacccgca caatccgaat      2580
     ggaatagccc tattctcctg gtgcctaaga aatcgtcaaa tgataagaaa aaatggcggc      2640
     tagtagtgga ttatcggaaa gttaattctg tcatccaaga cgacaaattt ccactaccca      2700
     atattgaaga ggtaattgac gcgttggccg gtgctaaata tttttcacac ctcgatctgt      2760
     cccagggcta ttatcaagtc cagctcaaaa aggaagatcg accgatcaca gcatttacca      2820
     cagcaacggg tcaattccaa atgacaaggt tgcctatggg attaaaaatt agcccatcaa      2880
     ccttttcacg gctaatgaca attgccttat caggactaaa tcaagaaaaa tgtttggttt      2940
     accttgatga cattattgtt tttgggaaga acattcatga gcacaatcag aatctaattg      3000
     ctacctttac tagattgcag tccgttaatc tcaaattgaa ccctgagaaa tgccattttt      3060
     tgaaaaaaga gttagtttat ctgggacatt atatttctaa tgaaggtata aaacctgacc      3120
     cagcaaaagt tggttctatt aaaaattggc cagtacccac caacgcagac caagtaaaga      3180
     gatttattgc ttttgccaat tattatagaa agcacattcc caactttgct aaaacttgta      3240
     tgccgcttaa cgtgctcact aggaaaaatg ttcctttcga atggactaaa gagtgtgaga      3300
     aatcattcaa ttcgcttaaa atccaattta tgaatccacc tcttttagac tttccagatt      3360
     ttagcgaaag taaccgattt gtgttacata ctgacgcgtc aggaagggcc attggagcgg      3420
     ttttgcaaaa cagcaatggg aaacccatag cttttgctag cagggctctc aataaagcgg      3480
     aattaaatta tggcactatc gaaaaagaat tactggcaat agtgtgggcg acgaaacatt      3540
     ttcgacctta cctgtttggc aaagcattcg atattttcac tgaccataga ccgttggttt      3600
     atttatttac tatgactgat ccatcaagca gactcacgaa atttcgcctc gcgttggagg      3660
     agtttgattt cgtgattcag tataccaaag gagcggataa tgtggtggct gatgcgcttt      3720
     ctcgaatgtc aagtgacgaa ctcaaaggtc tcaaccataa tgtcatacta gcctcaacaa      3780
     gatccaaaac cattaagagc catgataaca attccataaa gaacatacct atgtctggcg      3840
     tgcctgcacc caaaactgta tttgtggaac ttgtaatttg tcctgagatt aaagaagtta      3900
     aaacaacagt tgaacaaata aaaatccctc taacacaaag tattattcat ctacggagaa      3960
     tattacaaga tatcttaaac tttaaaaaac aattagggaa agaggtgata ctagtaatga      4020
     ggaaaaatga tcacaaaaca aaaaatctcc ttgaaaatat taaactgctc aacatgaaga      4080
     atttacccaa aataatagtc attggaaagg atatcaaaat tataaaggaa gatgaaaaag      4140
     aattaaaaat attaataatg aacgatcatc atatcctccc tacagcagga catgcaggaa      4200
     taaataggat gctaaacact ataaagcaac gatacacttg gaagggcatt gattcagatg      4260
     tgcgaaacat ggtaaaacat tgtaaggagt gtcaggttaa taaaaaaatt gtcgaaccta      4320
     aagtcccttt acaaataacg tcaactgcta gcgaaccaat gcaaaaaata tatttagatc      4380
     tagtagggcc actcgtaaaa gcggaaggtt atgagtacat attaacgaca caatgtgatc      4440
     tcacgaaatt catgacagcg acagctatca cggataagaa aacagaaacg gtagcaaaag      4500
     cgttcacaaa cagtgttcta cttaaatatg ggataccaga gagcatttgc acggatagag      4560
     ggactgagtt catgtcaaag ttattcgaag aactatgcaa atgtcttcat ataagaaaac      4620
     tgaattccac cgcataccac cacgaaagca taggagcttt agagaactca cacaagatgt      4680
     taggcaattt tctaaggatc tattgcaagg gtaacccact agcatggaag gagtggattc      4740
     aattttatga attcgcgtac aataataccg tacactcagc aacgggatat accccattct      4800
     ttctcatgta tggaagaata tctaacatac cgtcacatta tctgaacgac caaaagcggg      4860
     aaatgcatta cgatttcgac aactatgtga agactctgca agcgaaattg ataatctcac      4920
     acaaagaggt tagagacagg cttataaata ataagcataa tgtgaaattc aaatacgatc      4980
     aatcttgtaa aattaaaaca ttagagccag gaagtttatg tttactaaaa aatgaaacag      5040
     ccaataagtt aggtcaacaa ttctcaggac cctttactgt tgtaagagat tgtgatccaa      5100
     acgtggaatt aaagatagga agaacaactg aactggtaca taaaaataga actaagaaat      5160
     tttgtaaatg aaaaaaaaaa aaaaaaaaaa aatttgatag ggcg                       5204
//
ID   Gypsy-24_AnFu-LTR repbase;    DNA;    INV; 156 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-156
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2837-2837 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 156 BP; 50 A; 34 C; 37 G; 35 T; 0 other;
     tgtcatggag cgtgaccaca tgacgtcatg ggcttaaacc atagttcatg agtgccgtga        60
     gtgacaacta gaactataat aaaaaggctg cgcgatcagc gatggggaca ttaacgttcc       120
     acagtcggca caacaaacat ttcttgtaac gtaaca                                 156
//
ID   Gypsy-24_AnMe-I repbase;    DNA;    INV; 4721 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4721
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6836-6836 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..4708
FT                 /product="Gypsy-24_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNTSGDEERRSSAGFNVQPTHQLQNGSGEPSVQYPPL
FT                 QTPPSVSMDSSSMMQILQLMQQQMAQQQNILAQLMQQQGSGQSSSTSPEQI
FT                 LDSLCSHIKEFRYDAEAGTTFAAWYNRYEDLFERDAARLSDEAKVRLLMRK
FT                 LGTLEHDRYVNFILPKFSRDFSLPETVAKLTDLFGTKESLLHRRFKCLNTV
FT                 KGKTEDYLAYACRVNRGVVNFELGNLTEEQLKCLVFVCGLKDDKDVEIRQR
FT                 LLARIEERPETTLEHITTECQRIINLRHDSAMIERENTEQVYAVQHKETRF
FT                 QHYRSNLSERPSDSKPPSRSCWLCGGLHWSRDCTYRTHKCTDCGRIGHKEG
FT                 FCRTYNNYRRNYNQTNFNRQQANTRTVSVNVHSVQERRKYVPLSINGIHLR
FT                 LQLDTASDISVIGKNTWELIGAPPLSPPSVDAKTASGAVLPIIGEFSANIT
FT                 IREEQRVETVYVSQADLKLLGTDLIEAFSLWSVPVDQICNAIQSSTNKELR
FT                 LRYPKLFGEGMGLCTKGNVTLQLKEQCRPVFCPKRPVAYAMLDAVDKELDR
FT                 LEKLGVITPVDFSDWAAPIVVVRKANGQIRICGDYSTGLNGALHPQEYPLP
FT                 LPADIFARLGNCTHFTQIDLSDAFLQVEIAEQSRKFLTINTHKGLYSYNRL
FT                 PPGIKVAPAAFQQLMDKMLIGLRGVSSYMDDIIIGGTNQKEHDDILNETLA
FT                 RIQDYGFTIRVEKCFFNKKQIRYLGHIIDSQGIRPDPEKVKAITNLPAPSD
FT                 VSEVRSFLGAINYYGRFIPNLRNLRYPLDALLKEGREFAWTAECQKVFEKF
FT                 KSVLSSNLLLTHYDPRLEIVVSADASSVGLGATLSHKFPDGSMKVVQHASR
FT                 SLTKAEQRYSQIDREGLAIIFAVTKFHKMIFGRHFRLQTDHRPLLRIFGNK
FT                 KGIPVYTANRLQRFALTLLMYDFEIEYVTTEKFGNADILSRLISEHSKPDE
FT                 DYIIANLELEKDVKSVVISNISSLPINFTEVAKQTGKDSILSKVLHFTQNG
FT                 WPHNTIYTGELASFYARREALSAVDECLLFGERVIIPNSLQKRCLRQFHRG
FT                 HPGINRMKSLARSYVYWPSIDKDISECVASCERCQAASKSPAHSTPIAWPK
FT                 PSSPWQRVHIDYAGPLEGDYFLIVVDAYSKWPEIVKTSSITASATVAILRG
FT                 IFSRFGNPVTLVSDNGTQFTSEFFADFCAHNGIEHLRTAPFHPQSNGQAER
FT                 FVDTFKRSMKKISAEDTSLPEALDIFLQTYRSTPNPSTEEKKSPAELMLGR
FT                 KMRTTLDLLRPTLHPYKHSVPEKVRELSCGELVYVKTYNRNIWKWEPAVIT
FT                 GRCGNVMYEVVTGDQRTLRRHVNQMRRRNGNHHQQSRSSKPLALDVFLDSW
FT                 NVMHEPPPLFADQCTPSPVQAPPLSLSSAPTTSLASPGCLSPSSSSTPPSS
FT                 TISPEFAITSSASSPSSSSDSGSVYTSCSTTSPEESPTDQLDDHKEEEQLV
FT                 QAPRRSSRNIRPSRWLDQYQLY"
XX
SQ   Sequence 4721 BP; 1434 A; 1038 C; 1064 G; 1185 T; 0 other;
     gtggcgacga gaaatatttt cctcttcagt gtgtagaacc tgcgttgaaa aagaaaaaaa        60
     aaactgctcc ttccctaact aaaaaaaaaa gaaaaaaaaa aaaaaaaaaa gtatataaaa       120
     aggataatca gaacgtgtgt tatgggacag ctaagctcag tagcttgatt gaaaagttcg       180
     tgtacagttc ggttttattt tttttctgtc gaggacattt tttttttctc tgcaaataat       240
     ttataaaatg aataccagtg gtgatgaaga aaggcgctcg agtgcgggtt ttaatgtgca       300
     accaacgcac cagctacaaa atggttctgg tgaaccatca gtgcagtatc ctccattaca       360
     aacgccgcca tcggtgtcga tggatagttc gtcgatgatg cagatcttgc aattaatgca       420
     gcagcaaatg gcacagcagc agaacatttt ggcgcagtta atgcagcagc aagggtcagg       480
     ccaaagttca tccacatcac cggaacaaat tttggattcg ttgtgcagcc acattaaaga       540
     atttagatac gatgctgagg ctggaacgac atttgccgca tggtacaacc gctatgagga       600
     cctgttcgaa agagatgctg cccggttgag cgacgaagca aaagtgcgcc ttctcatgcg       660
     caagctagga actcttgaac atgaccggta tgtaaatttc atcttgccaa agttctcacg       720
     agatttttca ttaccagaga cggtcgctaa gctgacagat ttgttcggaa ctaaggagtc       780
     cctgttacat cgacggttca aatgcttaaa tacggtgaag gggaagacgg aagattatct       840
     agcgtacgca tgtcgcgtca accgtggtgt agtcaacttt gagctaggca atttgacgga       900
     ggagcagctc aaatgccttg tatttgtttg cgggttgaaa gatgataagg atgtggaaat       960
     tcggcaaaga ctgttagcgc ggatcgagga acgtcctgaa accactctgg agcatattac      1020
     aaccgaatgt caacgcatta tcaacttaag acacgacagc gcaatgatcg aaagagagaa      1080
     caccgaacaa gtctatgcag tgcagcataa ggaaacacgg ttccagcatt atcgtagcaa      1140
     cctgtcagag aggccatccg attcgaaacc ccctagcaga tcgtgttggc tatgtggagg      1200
     actacactgg tctcgagact gtacgtaccg tactcacaaa tgtaccgatt gtggaagaat      1260
     aggccacaaa gaagggtttt gcagaacgta caacaattat cgtcggaact ataaccaaac      1320
     gaatttcaat cgtcagcaag caaatactag aacggtctca gtcaatgtgc acagcgttca      1380
     ggagagaagg aagtatgtac ctcttagcat caatggcatt cacctccggc tacagctcga      1440
     caccgcttct gacatatcag tcattggcaa aaatacctgg gaactaattg gagcaccccc      1500
     cctttccccg ccatcagtcg atgccaaaac agcatcggga gcagtgttac ctataatcgg      1560
     cgaattcagt gccaacatca ccatcagaga agagcagcgt gtcgagacgg tttatgtttc      1620
     gcaagcggac ttaaagctgt tgggaaccga cctaatcgag gctttttcct tatggtcagt      1680
     gcctgttgat cagatatgca acgccattca atcatcaacg aataaggagc tacgactacg      1740
     ttatcccaag ctgtttggag agggcatggg cctatgtaca aagggaaacg ttactctgca      1800
     gctgaaggaa cagtgtcgtc cagttttctg ccctaaacgt ccagttgcat acgctatgct      1860
     ggatgcagtc gacaaggaac tggaccggct ggaaaagcta ggagtcatca caccagtcga      1920
     tttctcggac tgggccgcac caattgtcgt cgtgcggaaa gcaaacggtc agataaggat      1980
     ctgcggagat tactcgaccg gtctcaatgg agccttgcac ccccaggagt acccgcttcc      2040
     actaccagca gatattttcg ccaggctagg taattgcact cattttacac aaatagattt      2100
     atcggatgct ttccttcagg tcgaaattgc tgagcagagt cggaagtttc taaccatcaa      2160
     cacgcataaa gggctttact cctacaaccg acttccaccg ggcatcaagg tagctcctgc      2220
     ggcttttcaa cagttgatgg acaaaatgct cattggattg cggggagttt ccagttacat      2280
     ggatgatata attatcggag gtacgaatca gaaagaacat gatgatattt taaatgaaac      2340
     gctcgctaga attcaagatt acggtttcac aattcgcgta gaaaaatgtt tttttaataa      2400
     gaagcaaata cggtatctag ggcacataat agatagtcag ggcatcagac cagatccgga      2460
     aaaagttaaa gctataacca atttgccagc accatcagat gtcagtgaag taaggtcatt      2520
     cctcggagca atcaattatt atgggcgctt tattccaaat ctacgaaatt tgcggtaccc      2580
     actggatgca ctactaaaag aagggagaga atttgcgtgg actgcagaat gccagaaagt      2640
     ttttgaaaaa ttcaagtcag tattgtcttc aaacctatta ttaacccact atgatccgcg      2700
     acttgagata gtggtatcag ctgatgcgtc ttccgttggt ctgggagcaa ctctaagtca      2760
     caaatttcct gatggcagta tgaaggttgt acaacatgca tcacgatctc ttacaaaagc      2820
     cgagcaaaga tacagtcaaa tcgaccggga ggggctagct atcattttcg cagtgaccaa      2880
     atttcataag atgatatttg gtcggcattt ccgtcttcag acagatcaca ggcctcttct      2940
     aagaatattt ggaaacaaga aaggtattcc ggtttacact gcaaacaggt tacagcgttt      3000
     tgcccttacg cttttaatgt acgattttga aatcgaatat gtaaccacgg agaaatttgg      3060
     aaatgccgac atcctatcaa gattgataag cgagcacagc aagccagatg aagactatat      3120
     aatcgccaat ttagagctag agaaggatgt aaaatcagta gtcatcagca acatctcatc      3180
     cttaccaatc aattttacgg aagtagccaa acaaacgggg aaagattcaa ttttatcaaa      3240
     ggtactacat tttacacaaa acggttggcc acacaatact atttatacag gagaattagc      3300
     aagtttttat gcaagaaggg aagcgttatc agcagtggat gagtgcctat tgtttggaga      3360
     gagagtcata ataccaaaca gccttcagaa acgatgcctc cgacagttcc atcgtggcca      3420
     tcctggcatt aataggatga aatcattagc ccgtagctac gtatattggc catccatcga      3480
     taaagacata agcgaatgcg tagcctcttg tgagaggtgc caagctgctt caaagtcacc      3540
     tgctcattca actcctattg cttggcctaa accttcgtca ccatggcagc gtgtgcatat      3600
     cgattacgct ggccctctgg aaggggacta ttttttaatt gtcgtggatg catactcaaa      3660
     atggccagag attgtaaaaa catcaagcat tacggcatcg gcgactgtag caattctacg      3720
     aggaatattt tcacgttttg gaaatccagt cacgcttgta agtgacaatg gcacgcagtt      3780
     tactagcgag ttttttgctg atttttgcgc tcacaatggc atagaacatc tgagaacagc      3840
     accatttcat cctcagtcaa atggccaggc tgagaggttt gtagacacgt ttaagagatc      3900
     gatgaaaaag attagtgcag aagatacatc acttccggag gcattggaca tatttttaca      3960
     aacctatcga tctactccaa atccgtccac agaagaaaag aaatcaccag ctgagctcat      4020
     gttaggtcgt aaaatgcgaa caactttgga tctgcttcgt cctaccttac atccatataa      4080
     acacagtgta cctgagaagg tgagagagtt gtcctgcgga gagctagtgt acgtcaagac      4140
     atacaacaga aacatttgga aatgggagcc agcagtcata accggaagat gtggcaacgt      4200
     tatgtatgaa gttgtaaccg gtgatcaacg tacacttcga aggcatgtaa atcaaatgcg      4260
     tagacgtaat ggaaatcatc atcagcagag ccgctcttcg aaacccttag ctctggatgt      4320
     atttctggat tcatggaatg taatgcacga gccaccaccg ttgtttgccg atcagtgcac      4380
     tccatcacct gttcaggcgc caccattatc gttatcatcg gctccaacaa cgtctcttgc      4440
     atcaccgggt tgtttgtcac catcgtcatc gtcgactcca ccatcgtcta caatatcgcc      4500
     tgagtttgcg atcacatcgt ctgcgtcctc accatcgtca tcgtctgatt cgggttcagt      4560
     ctacacttcc tgttcaacta catcacctga agagtctcca acagatcaac tagatgacca      4620
     caaggaagaa gagcagctgg tacaagcacc acgtaggtct tctagaaata taagaccctc      4680
     acgttggttg gaccagtacc agctatatta acagggggag a                          4721
//
ID   Gypsy-24_AnMe-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-347
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6861-6861 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 347 BP; 80 A; 72 C; 99 G; 96 T; 0 other;
     tgttgtggac ggaatcaacg ttgcgcgaca ttgtgctctg ggccgctcgc tacgtgcgac        60
     ggctttcaga cgctaaactg tcaacatcca tgtgcagcta aagggggcag ccatcgcgat       120
     catgccgagg accgaggtcg ggacgacgac ctcggggtga ccgttcacga acacttcact       180
     gcaggccatc agcgttacag gtgcgagagc gagcgttagg gactagcggg cgtatcggtt       240
     ttttatgtaa ggttttaatg tgttgtaaac cgtgattgta atatagtgtt ttaagtattt       300
     tatcctggtg tttggactta tttatttatg cgttcaagaa cataaaa                     347
//
ID   Gypsy-24_CQ-I repbase;    DNA;    INV; 4301 BP.
XX
AC   AAWU01011196;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_CQ_;
KW   Gypsy-24_CQ-LTR; Gypsy-24_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4301
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 427-427 (2011).
XX
DR   GenBank; AAWU01011196; Positions   15930   20230.
XX
CC   'AAATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1035..4214
FT                 /product="Gypsy-24_CQ-I_1p"
FT                 /translation="MSLTSSVEAFRKGLSFTDWADHLSYSLDANCVTNDKI
FT                 KKAHLMNLCGPFLFTQMKHLFSPEALAKVTFDEIVTKLKQSLNKTEPDLVH
FT                 RLRFSQLVQQSDETAEEFVEMVKLHAEFCGFGIFKDVAIQDRILAGLNDKN
FT                 LKQTLLNEGNLTVSSMEKFIRSWVAAKLNFKSLTGKPNNKFYSGSQMHQEF
FT                 YQHYFSNQNNYPQMRRNYTQTQSREGNSRKIQLYNANMQHNTRHNNNHNFE
FT                 YNHINFIQTQSKHLRFNDQTQQRINDGDSYGRRFKTSDTFCDFCKQMGHSK
FT                 QNCLKCNSINKYFADLVNIEAGVINCNGNGSNNQIIEECMKKITTTETKSA
FT                 AKADEDGKTAIIDKNDLTQNGKFHDTAKVQNNMQIDFMIDDLNLSVLFNQN
FT                 WDDFENDDLCQGVLFNVKQSSNEQLCTTYYTEKCDESAKSCDDFSYFENNV
FT                 DDFDLENLFFDENVMLSSNEQKSKYIDMFDDVPNRNDDLNMLFKIDDGVDI
FT                 LKANSDNDAGSSELKIDRYTVKNYKNLKANADVVTNFAPDWVDSVKKQILF
FT                 FDDVSDNSAKVLFDMCSIEHKNEKIKTILNLNCFGQICWMLMIIICVKLFI
FT                 IRIKIIEISVALCKLLRMFLTSNAKLQKWVAMSKGWTINVDNCFALMSNQY
FT                 DWKLDDDSCLSNDNGSLLRAYQSRILKLVHVIYAIVTKTIWNNWYQNFNEI
FT                 TESSYLHLVVNIKINVLISSTIGLTHKVDECFVKVEKLLFTWRVICSMYFS
FT                 LNFVQEQSQMTNGEFQDFIIQFVLIFGVSFNYDDGHLSTINTKIYKWLKAW
FT                 TQEKFNYFQMKTLLGDQLVWQMILKLNLFCSRWQIFERVKKRVISSIFFKL
FT                 SNSLEKCFLKLVNIMQIKKNMMIKAMIVNDNRAKCSMFDQVSIKLFCILTI
FT                 VWITVHHLKINSIVCIIKLILFDIYLKQKPCFHQSQRRCGASGSTLEQLVS
FT                 KDKEPNIGFTSKVRVKKPSNPELKTIAGYSLRGVVPWEIPEDIKAGFCFES
FT                 GHAFEAKLLERDMLHTKNVLIKSDFGYMIRSGISSKSRNRIFPVDISILAR
FT                 LLS"
XX
SQ   Sequence 4301 BP; 1447 A; 592 C; 898 G; 1364 T; 0 other;
     actggcgacg aggaaattac gaactcagca accggcggga caagtaattt tctctaaaaa        60
     ctaaaatatt cttgttccgt gggaagcaat ttttgaccaa atttggtgag aaaaatacgc       120
     tcagttctgc tcagctggtc attagtggtg tactgggtgg atgctgtagg tggtgatatc       180
     gtgcagcaga aatctatcat tctttgggtg gagtaagccg gagaaaaatt gttcgcggag       240
     gcgctgtacc agatccacat tcatcccgga atatcgacgg tggcatcatc cggacggttt       300
     cggcaagatt ttgttcagcg tggacgctaa aaaaactggc cattttgggt ggtaagacaa       360
     agaacaacaa ggtaatttta cgctgcacca ttgtgtgtta tttttcccct ttgctttggt       420
     gatcttttgt tttcaacgac aaagttggtg agacgcggtg cgtttgatgg taaaactttt       480
     gcaaaaaaaa aaaaaaaaaa ctgactagaa tttcgctgaa gttattgaaa ctaacgaaat       540
     ctaaaaaaac agttacattt gtcatttaag gttaaatttt tttaaggtat tcttttgttt       600
     aaactgtata atgaaagtaa atttattttg tttaatttgt gtgtagattc attgtgtgct       660
     gccgataagc ttgattggct gcagtggttt gaaaaaagtg ttcggtggac cttccacggg       720
     acctggagat tgtctctggc ggtgctttcg taaagtgaag ttggtgattt ccggactggg       780
     ctttacgacg gcaagaggac aatcgggaac tttgcagcgg acggcgtaag gtggacgaac       840
     tttggcgctt cttgaaggaa cgcacggtgt ttgaggtgaa gtctgttgaa agtcgttcgc       900
     tggcaagggc cggacgaaga tttggtgagt cgttttaaac cattatttgg ttcgtggatt       960
     tgtttgtgac caactggtca agtggaatta ctctggcagt gttaaattta atttgcatta      1020
     tattatattc aaacatgagt ttaacgtctt ccgttgaagc atttcggaaa gggttatcct      1080
     ttactgattg ggcggatcat ttgtcttatt ctttggatgc aaattgtgtt actaatgata      1140
     aaataaagaa ggcacatttg atgaatttgt gcgggccttt tttgtttacc caaatgaaac      1200
     atctctttag tccagaagct cttgcaaagg taacttttga tgaaattgta acaaaattaa      1260
     aacagagttt gaacaaaact gaaccggatt tggttcatcg acttcggttt agtcaactag      1320
     ttcagcaaag tgatgagaca gctgaagagt ttgtcgaaat ggttaaattg catgcagagt      1380
     tctgtggttt tggcattttt aaagatgtag cgattcaaga ccgcattttg gctggactga      1440
     atgataaaaa cctcaagcaa acgttgttga atgaaggaaa tttaactgta tcatcaatgg      1500
     aaaagttcat caggtcttgg gttgcagcaa aattaaattt taaatcgctt actggcaaac      1560
     caaataacaa attttattct ggttcgcaaa tgcatcagga attttatcaa cattattttt      1620
     caaatcaaaa taactatccg caaatgcgaa ggaattatac acaaacacaa tcgcgagaag      1680
     gaaatagtcg caaaattcaa ttatacaatg caaatatgca acacaacaca aggcataaca      1740
     acaatcataa ttttgaatac aatcacataa attttatcca aacacaatca aaacatttga      1800
     ggtttaatga ccaaacacaa cagagaataa acgatggcga tagctatgga agaaggttta      1860
     aaacttctga cactttttgt gatttttgta aacagatggg acactcaaaa caaaattgtt      1920
     tgaaatgtaa tagtatcaat aaatattttg ctgatttggt aaatattgaa gcaggtgtga      1980
     taaattgtaa cggcaacggc tctaacaatc aaattattga ggaatgtatg aaaaaaataa      2040
     caacaacaga aacaaaaagt gctgcaaagg cagatgaaga tgggaaaact gcaattattg      2100
     acaaaaatga tttaacacaa aatggaaaat ttcatgacac tgcgaaggtt caaaacaaca      2160
     tgcaaataga ttttatgatt gatgatttga atttgagtgt tttgtttaac caaaattggg      2220
     atgattttga gaatgatgat ttatgtcagg gtgtattatt caatgttaag caaagttcaa      2280
     atgaacagct atgtacgact tattacacag agaaatgtga cgagagcgca aaaagttgcg      2340
     acgatttctc atattttgag aacaatgttg atgattttga cttggaaaat ttgttttttg      2400
     atgaaaatgt tatgttgagt tcaaatgaac aaaaatctaa atatattgat atgtttgatg      2460
     atgtcccaaa taggaatgat gatttgaata tgttatttaa aattgacgat ggtgttgata      2520
     ttttgaaggc taatagtgat aacgatgcgg gttcgagtga gctgaaaatt gatagataca      2580
     cagtaaaaaa ttataaaaac ttgaaagcaa atgctgatgt tgttacaaat tttgccccgg      2640
     attgggtaga ttcagttaag aagcaaattt tattttttga tgatgtttct gataattcag      2700
     caaaggtttt gtttgatatg tgttcaattg agcataaaaa tgaaaagatt aaaactatat      2760
     taaatcttaa ttgttttggg caaatatgct ggatgttaat gataataatt tgtgtaaaat      2820
     tatttataat acgaataaaa attattgaaa tttccgtggc tttatgcaaa ttgttgcgaa      2880
     tgtttttgac aagtaatgca aaattgcaaa aatgggttgc tatgagtaaa ggatggacta      2940
     taaatgtaga caattgcttt gctctgatgt ctaatcaata cgattggaaa ttagatgacg      3000
     atagctgttt gtcaaatgac aacggttcat tactgcgtgc ttatcaaagc aggatactaa      3060
     aattggtaca tgtcatctat gccatagtaa ctaaaactat ttggaacaat tggtatcaaa      3120
     atttcaacga gataactgag agttcttact tgcatttagt agttaacatc aagataaatg      3180
     ttttgattag ttcgacgatc ggccttacac acaaagtaga tgaatgtttt gtaaaagttg      3240
     aaaaactgtt attcacttgg agagttattt gctcaatgta tttttcactg aattttgttc      3300
     aggaacaaag tcaaatgaca aatggagaat tccaggattt tattatacag tttgttttga      3360
     tttttggggt tagtttcaat tatgacgatg gtcatttgtc aacgattaat acaaaaatat      3420
     ataaatggct aaaggcttgg actcaagaaa agttcaatta ttttcaaatg aaaacactgc      3480
     ttggtgatca gttagtttgg caaatgattc tgaaactgaa tttgttttgt tcccggtggc      3540
     aaatttttga gagggtgaag aagagggtga tttcatcaat ctttttcaaa ttaagcaatt      3600
     ctttggaaaa atgttttcta aaactagtaa acattatgca aataaagaaa aatatgatga      3660
     taaaggccat gatagtgaat gataatcgtg ccaaatgcag tatgtttgat caagtatcaa      3720
     ttaaattgtt ttgtatactg acaattgttt ggataactgt ccatcattta aagattaatt      3780
     ctattgtctg tataataaaa cttattttgt ttgatattta tttgaaacag aaaccatgtt      3840
     ttcatcaatc tcaacggaga tgtggagcga gcggatcaac gctggagcaa ttggtgtcaa      3900
     aggacaagga gccaaacatt ggtttcacat caaaagttcg cgtaaagaag ccgagcaacc      3960
     ccgagctgaa aacgatagct ggatacagct tacgaggagt tgttccttgg gaaatcccag      4020
     aggacatcaa ggcaggattt tgtttcgaat cgggacatgc atttgaggcc aaattgctgg      4080
     aacgcgacat gctacataca aagaacgtac tcatcaaaag tgattttggt tacatgatta      4140
     gaagtggaat ttcttcaaaa agcagaaatc gaatatttcc agtagatata tctatcttag      4200
     cacgtttact atcgtaaagt tcaatagctt gcaatcatgt ataattatag gttttaatta      4260
     aaaatacaat gttattgtaa tcttccaaag ggagggcgag t                          4301
//
ID   Gypsy-24_CQ-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   AAWU01011196;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_CQ_;
KW   Gypsy-24_CQ-I; Gypsy-24_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-155
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 428-428 (2011).
XX
DR   GenBank; AAWU01011196; Positions   15775   15929.
XX
SQ   Sequence 155 BP; 40 A; 43 C; 25 G; 47 T; 0 other;
     tgtggtgtac agccctgctc gaacgttacg tcaaacagtt gacgtaacgt cttagagttt        60
     tcatcagaac attcttgaat aaaatcggtc tctttcgact gcgactacca gcacaacaac       120
     acctcttttg ctctcactcc gatctcatct ttaca                                  155
//
ID   Gypsy-24_DAn-I repbase;    DNA;    INV; 4691 BP.
XX
AC   AAPP01019364;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DAn_;
KW   Gypsy-24_DAn-LTR; Gypsy-24_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4691
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019364; Positions  209976  205286.
XX
CC   Positions [2133-2639] - Reverse transcriptase
CC   Positions [3702-4178] - Integrase core
CC   'CATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4565
FT                 /product="Gypsy-24_DAn-I_1p"
FT                 /translation="MDVTNASIAQLKKWLSVLQLPTTGTKRELILRLSKMS
FT                 TESSNYLELVNHQDEDGDGSNVEDEDEEDLDLENNGNENDNDDEAGGEGND
FT                 KAGGEGNDKAGGEGKIGGKNEIKVGGDQSRKDGDKRSNKDGDGSSSKDGGE
FT                 NNNDDGGEGEDKVEKCACKDRNKASSSNTKAGAKEEVEKGNAEKSKFLEFC
FT                 NPSIDVSLGMATQVVPEFSGETCARKWITQMKNIATIYGIGGQYVKMLMIS
FT                 KIKGKANVWLHANPERIMLPLEELIAELISMFSDKVSKLEARRQFENRKWS
FT                 SGESFGSYVDDKVMLGQRISIEAEEMISRIIEGIPNQGLRNQAHIQCFENV
FT                 ALIKRAFAEVELPKSYGDRKETAVNKDEKDSKDTRCYNCNAKGHWAQECRK
FT                 PRREKGSCYACGEMGHFVAKCQKNKIKNEGKNNYVRYFEIYFNDNTNTKLI
FT                 TECLIDTGSPISFIKISKVPEDTCKIPVLSSYHGINESCLETYGRILCYIK
FT                 KKVNKIHFHLVVVANKSMSHDVVLGRDFMEACDLNLNLDTLKLVTVENLEN
FT                 VKNSNDVSDEEKIISDVDVNKVSGESRIISKEVIVSHEPKIRNAVRFREAT
FT                 EVDINIVEKELLNIDIEDESVEYKIGEQVDYKVRQQFMKIIENFYVNKQRP
FT                 KEPEVKCEIKLRLDDSKPFSSSPRRLAYTEKEKLQSILDEYLKEGIIRPSE
FT                 SEYASPIVLVKKKTGDLRLCVDYRKLNKTMIKDNYPLPLIDDLLDTLVNKT
FT                 IFSKLDLKHGYFHVFVENESIKYTSFMTPLGQFEFMRMPMGLKNAPAVFQR
FT                 FINKIFADMIREGKVVIYMDDIMIASKEIEEHLSVLKEVFERLARNKLELR
FT                 MDKCEFLQASVQYLGFLVSSEGIQANDKGIEAIRDFPVPNKVHGVRSFLGL
FT                 CSYFRRFIKDFSRIAKPLYELLKKDSEFVFGEKELDCFEMLKKKLIEAPVL
FT                 GLYYYKDEVELHTDASAHGFGAVLLQRKEDKKLHPIFYFSKATTKDEAKYH
FT                 SFELETLAIIYALRRFRIYVQGRRFRIVTDCNSLTLTLNRIELNPRIARWA
FT                 LELLEYDFELVHKSGKLMQHVDALSRNTNICVVETVSFEDNLVICQAKDEK
FT                 LKKIRMRLEKEDDKMFEMRNGVIYRKANDGKLLFYVPEEMEDKILYKYHNE
FT                 LGHLGRDKVMDAIVRTYWFANMKEKVVRHIDNCLRCVAFSPKSGKEEGFLH
FT                 SIPKGSVPFEIIHIDHYGPVDKGRANKHLFVVIDGFTKYVRLYATKTTNTK
FT                 EVIIALKDYFRSYSRPTCIVSDRGSCFTSEDFQKFLEDYNVKHVKIATGSP
FT                 QANGQVERINRIIGPMIAKLADSEKGLHWDTVIEDVEFSLNNTKQRSIAQM
FT                 PSKMLFGIAQKGKIIDELRQKLEELDDTDNVRNLDEIRTKGTECQTKLQKD
FT                 NERNYNEKKKASSEYKVGDYIVVKNFDCTVGVARKLIPKHKGPFVIDKSLG
FT                 NDRYLIKDVEGFQLSRIPYQGVWSSQNIKHWIGKRR"
XX
SQ   Sequence 4691 BP; 1775 A; 586 C; 1103 G; 1227 T; 0 other;
     aaatcagaag tgggccgatc ttgtgccaaa taaacaatta aaaacaatta aataaaacga        60
     aaatggacgt taccaacgca tcaattgcac aattaaaaaa gtggttgagt gtgttacaac       120
     taccaacaac aggaacaaag cgcgaattaa tattgcgttt aagcaaaatg tcaacggagt       180
     cgagtaatta tctggaatta gttaatcatc aagacgaaga cggcgatgga agcaacgttg       240
     aagacgaaga tgaggaagat ttggacttag aaaacaacgg aaatgaaaac gataatgacg       300
     acgaagctgg aggtgaagga aacgacaaag ctggaggtga aggaaacgac aaagctggag       360
     gtgaaggaaa aattggcggt aaaaatgaga tcaaagttgg cggcgatcaa agcagaaaag       420
     acggagacaa aaggagcaac aaagatggag acgggagcag cagcaaagac ggcggcgaaa       480
     acaacaacga cgacggcggc gagggagaag acaaagttga aaagtgtgca tgcaaggaca       540
     ggaataaagc cagcagcagc aacacaaaag caggcgccaa agaagaggtg gaaaaaggca       600
     atgctgagaa gtcgaagttc ttggaatttt gcaacccaag catcgacgtt tcgttgggca       660
     tggcaacaca agttgtgcct gaattttcgg gtgaaacttg cgcacgaaaa tggattacgc       720
     aaatgaagaa tattgcaacc atttatggaa ttggtggaca atatgttaag atgttgatga       780
     ttagcaaaat caaaggaaaa gcaaacgtgt ggctacatgc aaaccctgag cgcattatgc       840
     taccgttgga ggagttaatc gctgagctaa tttcgatgtt ttcggataaa gtctcgaagt       900
     tagaggcaag gcgtcaattc gagaaccgta aatggagttc cggtgaaagt tttggaagct       960
     acgtggatga caaggtgatg cttggtcaga gaatcagcat agaggcagaa gaaatgataa      1020
     gtcgcatcat tgaaggaatt ccgaatcaag ggctgcgaaa tcaagcacat attcagtgct      1080
     ttgaaaatgt tgcgcttatc aaacgtgcat ttgcggaagt ggagttgcct aagtcttatg      1140
     gtgacaggaa ggagacagca gtgaacaagg acgagaagga cagcaaggac acgcgttgct      1200
     ataattgcaa tgctaaagga cattgggcgc aggagtgcag gaagccaaga cgtgagaaag      1260
     gttcgtgcta tgcatgcggc gaaatgggac attttgtggc gaagtgtcag aaaaacaaaa      1320
     ttaagaacga gggcaagaac aattatgtaa gatattttga aatttacttt aatgataata      1380
     ctaataccaa gttaattaca gaatgcctca tagatacagg aagcccaatt tcatttatta      1440
     aaatttctaa agtacccgaa gatacttgta aaataccagt tttaagttca tatcatggaa      1500
     taaatgaaag ttgtttagaa acttatggca gaatattatg ttatattaag aaaaaagtca      1560
     ataaaataca ttttcattta gttgttgtgg caaacaaatc tatgagtcat gatgtagttc      1620
     ttggaaggga ctttatggaa gcatgtgatc taaatctgaa ccttgacacc ttgaagttgg      1680
     ttacggtaga aaacttagag aatgttaaaa acagtaatga tgttagtgat gaagagaaaa      1740
     taattagtga tgttgatgtt aataaggtta gtggtgaaag tcggataata agcaaagagg      1800
     taatagttag tcatgaacca aagattagaa atgcagttag gtttcgagaa gcaacggaag      1860
     ttgacataaa catagtggaa aaggaactgt tgaatattga tattgaagat gaatctgtag      1920
     aatacaaaat tggtgaacaa gtggattata aggttagaca gcaatttatg aaaattatag      1980
     aaaattttta tgttaataaa caaagaccaa aggaaccaga ggttaagtgt gaaataaagc      2040
     tgaggttgga tgattcaaaa ccttttagca gttctccgag acggttagcc tatacagaga      2100
     aagaaaagtt acagagcata ttagacgagt atttaaaaga gggaattatt aggccgagtg      2160
     agtcagaata tgcatctcca atagtgttag ttaagaaaaa aacaggtgat ttgcgattat      2220
     gtgtggatta caggaagctt aataagacaa tgattaaaga taattatcca ttacccttaa      2280
     ttgatgattt attggacaca ttagtaaata aaactatatt ctccaaatta gatcttaaac      2340
     atggatactt tcatgtgttt gttgagaatg aatcaattaa atatacttca tttatgacgc      2400
     cgctagggca gtttgaattc atgcggatgc caatgggctt aaaaaacgca ccggcggtgt      2460
     ttcaaagatt tatcaataaa atttttgcag acatgataag agaaggaaaa gtggttatat      2520
     acatggacga tattatgatc gcgagtaaag aaattgaaga acatttgagt gtacttaaag      2580
     aagtttttga aagattagca agaaacaaat tagaactaag aatggataaa tgcgagtttc      2640
     tacaagcgag tgttcaatac ttaggctttt tggtgtcgag tgaaggaata caagcaaatg      2700
     ataaaggaat tgaagccatc agagattttc cagtccccaa caaagtgcat ggagttagaa      2760
     gctttttagg attgtgttca tattttagaa gatttataaa ggatttttcg aggattgcaa      2820
     aaccattata tgaattgttg aaaaaagata gcgaatttgt gtttggagaa aaagagttag      2880
     attgttttga aatgctaaaa aagaagctca tagaagcacc ggtactaggt ttatattatt      2940
     ataaggatga ggtggaacta catacagacg caagtgcaca tggttttggt gcggtattat      3000
     tacagaggaa agaggataag aaattgcatc ctatatttta tttttcgaaa gctacaacga      3060
     aagatgaggc aaaatatcat agctttgagc ttgaaacgtt agccattatt tatgctctac      3120
     gaagattccg aatatatgtg caaggtagac ggtttagaat tgttactgat tgtaattcat      3180
     tgacgttgac gttgaacaga atagaactta acccgcgtat tgcgaggtgg gcgttagagt      3240
     tactcgagta tgactttgag ttagttcata agtcgggaaa gcttatgcaa catgtagatg      3300
     ccttaagtag gaatactaac atatgtgtag tagaaacagt gagttttgaa gacaatttag      3360
     ttatatgtca agcgaaagat gaaaagttaa agaaaattag aatgaggtta gaaaaagaag      3420
     atgataaaat gtttgagatg agaaatggag taatttatag gaaagcgaat gatggaaaat      3480
     tgttgtttta tgttccagag gaaatggaag acaagatact gtataaatat cacaatgagt      3540
     taggtcattt aggtagagat aaggttatgg atgcaattgt taggacgtat tggtttgcaa      3600
     atatgaaaga gaaagttgtt agacatattg ataactgttt gaggtgtgta gcgttttcac      3660
     cgaaatcagg aaaagaagaa ggatttttac acagcattcc gaaagggagt gtaccattcg      3720
     agattataca tattgatcac tatgggccag tggataaggg aagggcaaat aaacatcttt      3780
     ttgttgtcat agacgggttt acaaaatatg ttaggttata tgcaacaaaa acaacaaaca      3840
     caaaagaagt tattatagca ttgaaagact attttagatc gtatagtaga ccgacttgta      3900
     tcgtttcgga taggggcagt tgttttacat ctgaagattt tcagaaattt ctcgaagatt      3960
     ataatgttaa gcacgtaaaa atagcaacag ggtcacctca agctaatggt caagtggaaa      4020
     gaatcaatcg aataatagga ccaatgatag cgaaattggc agactcagaa aagggattgc      4080
     attgggatac agttattgaa gatgttgagt tttcattaaa caatacaaag cagagaagca      4140
     ttgcgcaaat gccgagcaaa atgttatttg gaatcgctca aaaaggaaaa attatagatg      4200
     aattaaggca aaagttagaa gaattagatg ataccgataa tgttagaaat ttagacgaaa      4260
     ttaggacaaa aggaacagag tgtcaaacaa agttgcagaa agacaatgaa agaaattaca      4320
     atgagaaaaa gaaagcaagt tcagaatata aggtaggtga ctatatcgtg gttaagaatt      4380
     ttgattgtac tgttggcgtt gcaagaaagt taatacccaa acataagggt ccattcgtaa      4440
     tagacaaaag tttaggaaat gataggtatt taattaaaga tgttgaaggt tttcaattgt      4500
     cacgtattcc atatcaaggt gtttggagta gtcagaacat taaacattgg ataggtaaac      4560
     gaagataaag ctcaaatatc atgtaaatta ttgtaaataa ataactaata gtatctaagt      4620
     caaatagatg taagaatcaa ttgtaaaata tcacaagatc aggggatctt taaatgtcag      4680
     gacggccgaa t                                                           4691
//
ID   Gypsy-24_DAn-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   AAPP01019364;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DAn_;
KW   Gypsy-24_DAn-LTR; Gypsy-24_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019364; Positions  205285  204955.
XX
SQ   Sequence 331 BP; 90 A; 56 C; 80 G; 105 T; 0 other;
     tgtagcagga ttgctacaga atgtatatat gtatgtattg ctattaacga gaagtgtata        60
     taagtgtata agtgtataac ggtaaactgt tgttagtata agtcggtgtt gttgcttgtt       120
     gtcggttctg gctctctctc tctcttgtgc tctcatcgct ctcatgctct ttcagcgaat       180
     tatgagggtt gatgcagatc gcgtgggatg agagcggagt cagtcgaaca ccagcagcga       240
     tccgaagcgg acatatttta ataaataaaa caaagcgaaa tatagccggc aaaggtgttc       300
     ttcttcgggg aatatttatt ataaccctac a                                      331
//
ID   Gypsy-24_DBp-I repbase;    DNA;    INV; 5009 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5009
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 693-693 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..3193
FT                 /product="Gypsy-24_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="NGNRKFSSNSLGSNRRNRNPYIRITINNRPFKCVIDT
FT                 GSSINLIKENYFNFPQTLKTSEVHTINGVIKLNKSVNFKSSKLCPIDQPFW
FT                 VHNFSQKYDILIGREYLEACEAIINYKQETVTLSGFVFSMIYNHEDFRNSE
FT                 METLEDYLSPPSSEDISFNFAINNDLEENNKFRINHLNEEERTKLNNILFE
FT                 FSDIQYREGENLTFTSAIKHSIQTKHEDPIYKKPYKYPQAHDQEVEVQIKE
FT                 MINQGIIRKSKSPYCSPIWIVPKKEDASGKKKFRIVIDYRSLNEITIDDKY
FT                 PIPVMDEILDKLGKCQYFTTIDLAKGFHQIQMDENSISKTAFSTKNGHYEY
FT                 TRMPFGLKNAPATFQRCMNNLLEDLMYQHCLVYMDDIIIFSTSLEEHILSI
FT                 KKVFSKLREANLKLQLDKCEFMKKETEFLGHIITTEGIKPNPKKIEAIQKF
FT                 PIPKTQKEIKSFLGLCGFYRKFIPDFAKIAKPMTVNLKKGSTINSTDKEYL
FT                 EAFEKLKLLITSDPILIYPNFEKLFSLTTDASNVALGAVLSQNHKPICYAS
FT                 RTLNEHEINYSAIEKELLAIVWATKYFRSYLFGRKFEILSDHRPLVWLHNI
FT                 KEPNMKLQRWRIKLNEFDFTIKYLPGKENQVADALSRVKLDENFLGESPDS
FT                 TPSLPTIATVHSAQEDNQNYIEITERPLNYYNRQIEFHRGNSNEVKLTQYF
FT                 HKTNLKIMYKEMTHEYAKELIKEYLCSKKSVIYFPCEMDFIIFQNAYIEII
FT                 XPNNLTKVMKTSTILTDVQTFAEFKEIVLKAHVELLHPGIEKQTSLFKEKY
FT                 YFPDYQRLIQNIINECEICNLAKTEHRDTKLTFELTPETFNPREKYVIDFY
FT                 MIDNKQFLSCIDIYSKYAALINVNSRDWLEAKRALLRIFNEMGKPKEIKAD
FT                 KDSAFMCSALQLWLQSEDVRITITTSKKREFKQNIYCS"
FT   CDS           3642..4475
FT                 /product="Gypsy-24_DBp-I_2p"
FT                 /note="envelope protein."
FT                 /translation="MQFTRLGIFNPKLLKHDPLKHINSEKLLNIKTSTWLQ
FT                 VNTNEILIISHIPRTIIKTPIYKILPYPDQNQNIITETLHDEYYIKNQQVF
FT                 KVKTKEIVNNKCIIGLLRQTNTECRYTKMYKNFELNYIEPNIIITWNLPKT
FT                 LLNQNCINKDLIAEGNNIIKAFNCSIQIEDVIITNTMLDYTRTIYVNNNIT
FT                 KLEPLSYIVAKEIFQNHSKQYFTTQTILLILLSIIIIIIIIYLIYKFKNIP
FT                 KRIIINYKKQKVISPEEETKSSENKEHDLQLYPKLTA"
XX
SQ   Sequence 5009 BP; 2084 A; 820 C; 691 G; 1412 T; 2 other;
     agtcagtaaa cttaaacaag tagcacaaca agaaggttgt tatgattctg gttctgataa        60
     agttaaatca caacataatt caaatcaaaa cgaacaagat aggagaaatt atcaaaaaaa       120
     taataatttc caaagaaata attcctttta taataataat aatcaacaaa gttataatca       180
     gcaaagtaac tatagacaac caaataattt caatcaacaa caatttcgac aggaattgca       240
     gcaaaactta aatcaaggta gagctcagaa tcctatgaat tatcaacagc caatcatctt       300
     ctttacaagg tactaattct aacaaaccag tgaaaagaca gcgtgaatat tcaagcgatc       360
     aatctaaaat ggaaatcgaa aattttcatc aaatagcctc ggatccaata gaagaaatag       420
     aaatccttac atcagaataa ctattaacaa tcgcccattt aaatgtgtaa tagatacagg       480
     aagttcaatc aacctaataa aagaaaatta ttttaatttc ccacaaacat taaaaacgtc       540
     agaagtgcac acaattaatg gtgtaattaa attaaataag tccgtaaatt tcaaatcaag       600
     taaactttgt ccgatcgacc aaccattttg ggttcacaat ttttcccaaa aatatgatat       660
     attgatagga agagagtatt tagaagcatg tgaagcaata attaattata aacaggaaac       720
     agtcactttg agcggatttg ttttttccat gatatataac cacgaagatt tcaggaattc       780
     cgaaatggaa acattggaag attatctcag tccaccttca tctgaggata tatcttttaa       840
     ttttgcaatt aataatgact tggaagaaaa taataaattt cgaataaatc atcttaatga       900
     agaagaaaga actaaattaa ataacatttt atttgaattt agtgatatcc agtacaggga       960
     aggtgaaaat ttgaccttta ccagtgctat aaaacattca atccaaacca aacatgaaga      1020
     tcctatttac aaaaaacctt ataaataccc ccaagctcat gatcaagaag tcgaagtcca      1080
     aattaaagaa atgataaatc agggaataat acgtaaatcg aaatcccctt attgttctcc      1140
     aatatggata gtcccaaaga aagaggacgc atcagggaaa aagaaatttc gaatagtaat      1200
     agactatcga agtctaaatg aaataactat tgatgataag tatccgatac cagttatgga      1260
     tgaaatactt gacaaacttg gaaagtgtca atattttaca acaattgacc ttgccaaggg      1320
     ttttcatcaa attcaaatgg atgaaaattc tatttcaaaa acagcttttt caactaaaaa      1380
     tggacattac gaatacacac gaatgccatt tggtctgaaa aatgcgcctg caactttcca      1440
     acgttgcatg aacaatttat tagaagattt aatgtaccag cattgccttg tttatatgga      1500
     tgacataatt atattttcta cttcattaga ggaacacata ttgtctataa aaaaggtgtt      1560
     ttcaaaactt cgagaagcta atcttaaact tcaacttgac aaatgtgagt ttatgaaaaa      1620
     ggaaaccgaa ttccttggac atataataac aacagaagga ataaagccaa accccaaaaa      1680
     aattgaggca atacaaaaat ttccaatacc aaaaacmcaa aaagaaataa aatcattttt      1740
     aggtctctgt ggattttata gaaaattcat acctgatttt gctaaaattg caaaacccat      1800
     gacagtaaac ttaaagaagg gttcaactat aaattcaaca gataaagaat atttagaagc      1860
     atttgagaaa ttaaaacttc tcattacatc agacccaatt ttaatttacc ctaactttga      1920
     aaaactattt tctctaacaa cagatgctag caatgtcgcc ctaggcgcag tattatcaca      1980
     aaatcataaa cctatttgtt atgctagtag aactcttaat gaacatgaaa ttaattattc      2040
     agcaatagaa aaagagcttc tggctatagt ctgggccact aaatatttta ggtcttatct      2100
     ctttggtaga aaattcgaaa ttcttagcga tcatagacca ttagtttggc ttcataatat      2160
     aaaagaacca aatatgaaac tacaaagatg gagaataaaa ttaaacgagt ttgacttcac      2220
     tattaaatat ttgccgggaa aggaaaacca ggtagctgat gctctgtcaa gagtaaagct      2280
     agatgaaaat tttttaggag aatcaccgga tagtaccccg tcattaccca caatagcaac      2340
     agtacatagt gcacaagaag acaatcagaa ttatatagaa ataacggaaa gacctttaaa      2400
     ctattacaat agacaaattg aatttcatag aggaaattca aatgaagtta aattgactca      2460
     atactttcat aaaaccaacc ttaaaataat gtataaagaa atgacccatg aatatgcaaa      2520
     agaattaatt aaagaatatt tatgctccaa aaaaagtgtt atctattttc cttgtgaaat      2580
     ggacttcata atatttcaaa atgcttatat agagattatc wgcccaaata acttaaccaa      2640
     agttatgaaa accagtacaa tattaacaga tgtccaaaca ttcgccgaat tcaaggaaat      2700
     tgtccttaaa gctcacgtag aattattaca tccaggaata gaaaaacaaa caagcctttt      2760
     taaagaaaaa tattattttc ccgattatca gagattaatt caaaatatta taaatgagtg      2820
     tgaaatttgt aaccttgcta aaacagagca cagagataca aaacttacat ttgaattaac      2880
     cccagaaacc tttaacccca gagaaaaata tgttatagat ttttacatga tcgataataa      2940
     acaattctta tcttgcattg atatttattc caaatatgct gctttaataa atgtcaacag      3000
     tagggattgg ttagaagcaa aaagggcatt actcaggata tttaatgaaa tgggtaaacc      3060
     aaaagaaatt aaagccgaca aagactccgc atttatgtgc tcagcattgc aactttggct      3120
     gcaatcagaa gatgtaagaa taactataac cacaagtaaa aagagggaat tcaaacagaa      3180
     tatatattgc agctaaaccg gatatatatc cacaacggaa tagtgatcct tataaaattg      3240
     tattggatca acgccgagaa tgaactacaa atccagttca ttccaaaaac agaaagcgtt      3300
     cattaatgca gatagaaata gcggaatcct aaaatttgca cgaatttgac aaattggtct      3360
     atcgaatttg gtaccttcga acagttttaa gtatcgactt gaaatttcgt atttatttgg      3420
     cacattggat caacaagata gggaagaatt agaatcaaaa attgataatt tgtccgaaaa      3480
     tagtatacag atcaacgaat taaataaagt aattgatgca attaataaag gaatagaaac      3540
     agtcaatcgt ttaaatgaaa accaaaacga aaaccaaagg ttagcaatcc ttattttcaa      3600
     tttacaagaa tttacagaat acgtagaaga cattgaatta ggaatgcaat ttacaagatt      3660
     aggcatattc aacccaaagc tcctaaaaca tgacccgctt aaacatatta attcagaaaa      3720
     attgttaaat atcaaaacat ctacttggtt acaagttaat actaacgaaa tattgataat      3780
     ttctcatatt cctcgtacta ttattaaaac ccccatttat aaaattttac cgtatccgga      3840
     tcagaatcag aatataataa ccgaaacatt gcatgatgaa tattacataa aaaatcagca      3900
     agtctttaaa gtaaaaacaa aagaaatagt aaataataaa tgtataatag gtctcttaag      3960
     acaaacaaat acagaatgta gatatacaaa aatgtacaag aacttcgaat taaattatat      4020
     tgaacccaac attataataa catggaattt gccaaaaact ttgctaaatc agaattgtat      4080
     aaataaagat ttaattgcag aaggaaacaa tataataaaa gcattcaact gttctataca      4140
     aatagaagat gtaataataa caaatactat gcttgattac acccgaacta tttatgtaaa      4200
     caacaacata actaaactcg aacctttatc ctatatcgta gccaaagaaa tattccaaaa      4260
     ccattcaaaa caatatttta caacccaaac aattttatta atactactat caataataat      4320
     tattattata atcatatatt tgatttataa atttaagaac atcccaaaaa ggataataat      4380
     taattataaa aaacaaaagg ttattagtcc cgaagaagaa actaaaagtt cagaaaataa      4440
     agaacatgac ctacagttat accccaaact aaccgcctga ggacaggcta aattcttaag      4500
     gatggggaag taacatatca acaaaatttc tttaagtgta tatcagtaaa ttttgtaaac      4560
     cgaagctgaa gccttttgta ttgaaattcg taacccagct gcaaatagcc tcattccaat      4620
     ttttgtaaaa acataaacat ttaattattc caattcggct gaaaacagcc tcatttcaga      4680
     tttccaattt ctaagagtca cttcagattg aaaaccaaaa caatatttgg gtaaacagaa      4740
     atcccgactc aaatctttct cactcctttt aagtgaatta aaactaaaca gatcaaaaca      4800
     ttcttaaatg ggaacccact tcacaggaaa tttacatttt cttgtcacct cgattaattg      4860
     agacccaaag ccttccatgt caactgacac ctcaagtaaa aggttccgac tcaatctatt      4920
     ctcttcagaa aacaaagcct ctcagagaga aaagcttctt tcgagctttg atctgcaaaa      4980
     agcttcagca agggtagcta taaaaagga                                        5009
//
ID   Gypsy-24_DEl-I repbase;    DNA;    INV; 6148 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   08-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6148
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 545-545 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3615..4973,4922..5677)
FT                 /product="Gypsy-24_DEl-I_2p"
FT                 /note="reverse transcriptase and ribonulcease H."
FT                 /translation="MDIFGIETESISTNNFYKQKIRLKDDEPVYIKNYRIP
FT                 HSQKEEVDKQVDKLIKDKIIEPSVSEYKSPLLIVPKKSLPNSTDKRWRLVI
FT                 DYRQINKKILSDKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEENSR
FT                 NITSFSTSNGSYRFTRLPYGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDL
FT                 IVIGCSEKHMIKNLTNVFDLCRKHNLKLHPEKCTFFRHEVTFLGHKCTDKG
FT                 ILPDNKKYEVIEKYPVPTDADSARRFVAFCNYYRRFIKNFSDFSRHITRLC
FT                 KKNVKFEWTDQCQKAFEYLKIQLMKPTLLQYPDFNKEFCITTDASKQACGA
FT                 VLTQEHNGTHLPVAYASRSFTKGESNKNTTEQELAAIHWAIKHFRPYIYGK
FT                 HFTVKTDHRPLTYLFSMTNPSSKLTRMRLDLEEYDFTVEYLKGKDNHIADA
FT                 LSRITITDGKGQSHCRRIISNNHNGLKNIQTNNKILKVTTRNQSKQKNSCA
FT                 GTEQEKIDLPRQTLNEASQPNVYEVIVNDEVRKVVTLRLTNSLCLLKHGKK
FT                 VIARIDVSDMYTNGILDLGQFFQRLEKQAGILNISQLKVAPSEKIFDTISM
FT                 ESFKIMGNKILQSLRVALLKPVTLLSNNDKEKEAILFTFHDDPIQGGHTGI
FT                 ARTLAKYEKVLLLKNMTSTAHHYQSVGTVERSHRTQIALNLRAERAFIAIT
FT                 PICQA"
FT   CDS           join(1179..1379,1357..1764,1734..2852)
FT                 /product="Gypsy-24_DEl-I_1p"
FT                 /note="Gag protein."
FT                 /translation="MNTLEAVTKVYRNDPNFRHRILQLVSTTPRSILELEY
FT                 SYIDLFRLDFSFKENEYLGRTLDFVAYKKPISSLTKSLSMEWEELITHIHK
FT                 IKEAFIKSYKSLSQKRPIQQDTIRKHAKILVDLFNEARILVHENRKIISKT
FT                 NWSKVSKLLIKLRSNLLTVRERYKLDITIPTILNTPLTIDPSEELESNNPE
FT                 PTESDTQESSTLRVRHTRKLDSEVEEETKLEETDLHDLTIPAVLTIPKTQE
FT                 EDTEDSDLEIIESKPTIMADETIAQRAYIKDISSAIPEFNGQKLNLRRFIT
FT                 AVKLVDLTKGPFEHLAIEVIKSKIVGSTLYKVQNETTITAIIAKLEANVVG
FT                 ETSDVLKAKMTKTTQKGKTAEKFTNEIDNLRKLLEASYIDEGLSAEHADKF
FT                 STKEAINTMVKNCEHGRLKTILEAGNFTTMNDAITKYIQCSTEMTGNANSI
FT                 LYARGGQAYRGNFRGRGGRGNYNGHYQYQNNGYNRYNGIIKVMITGPTTII
FT                 IVIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
FT                 IIIIIIIIIIIIIIIIIIVRTVQATTENS"
XX
SQ   Sequence 6148 BP; 2574 A; 1098 C; 950 G; 1524 T; 2 other;
     tggcgaccgt gacatggtcc tggaggacct ggatctaaca aggatatatg gaagaataac        60
     aacctggaac actggcaaag gagaaaagag agaagctgag tgagtagagt attgtgagtg       120
     atgggtcgcg gtgaagttat taaaaagttg agcaaagaaa atctaaaaca ccgtggaagg       180
     caactcctga gctacaggcc aggcttgaag gaaataaaaa ataaaaaccc aacaccgcaa       240
     gctcactcag caaatattca agttatcaat gaaatcaaaa taacgaaacc accttctcta       300
     aagccattac cgaggaaaga gaaatcctgc ccaacgattg cccgggacca ctatatagcc       360
     cggcgtgcaa atcaactgca tgaagcccac gacctgtgcg aagaccggca ccggccccgc       420
     ctgagctcat aggctcggga caacagcagc agagaactca acaagcgcga gaggcacccc       480
     gccccttgcg ccttcgaagg agcgtcagcg aagccaagcc ggcgacgacc agctgacgcg       540
     gggaacaccg aaaaaaaaga gaaacatttt attaccattt gcactgcgat gcataatttt       600
     tttaattgca ctgcgatgca tattttttta ataatataat ataatttttg taaaactgaa       660
     aatgacaaac ccaaaatttc ttaaaaacaa aataaaaaaa aaattaaatt taaaacaaaa       720
     atttcaatta caaaaaaaaa aaaaaacaat ttaatcatat ttttttcatg agccaatata       780
     catggcacat taatwataaa tcgagaaaaa caccaaatat aattggcata aattataaaa       840
     cacccaaaat gggtttagta gacaccaaag tggtagactc aacggcaaac gttgtaaata       900
     agatcgaatc tgaaaaaatt gacacagaaa tgatcacaat aatgctaata ataatagcag       960
     ttataatgtt agcaaatgcg cttttaaaat tatataaatt gcacaataag tgcctactca      1020
     aaagattcca aagtcaagca aacgacttgg acaaaattta aaacttgccc atcataattg      1080
     cgatcattat tggcattaat caaataaaaa aaatatatta acatattcaa taaacttaca      1140
     ataattccca atatcattct tattttttaa aaccaaaaat gaacactcta gaagccgtta      1200
     caaaggtcta taggaatgac ccaaattttc gacatagaat tctacaattg gtctcaacga      1260
     ccccgaggag catattagag ctcgaataca gttacattga tttattcagg ttagattttt      1320
     cattcaaaga aaatgaatat ttaggacgaa cactagattt cgtcgcttac aaaaagcctt      1380
     agtatggaat gggaggaatt aattacccat atccataaaa taaaagaagc ttttataaaa      1440
     tcctataaaa gtttaagcca aaaaaggcca atacaacaag atacaataag aaaacatgca      1500
     aaaatacttg tcgacttatt taatgaggca agaatattag tgcatgaaaa tagaaaaata      1560
     ataagtaaaa cgaactggtc aaaggtatca aaattattga tcaagttacg ttcgaactta      1620
     ttaacagtca gagagaggta taaattggat ataactatac caacaatttt aaatacccct      1680
     ctgacaatag atccaagtga agaacttgaa tcaaataacc ctgaaccaac tgagtcagac      1740
     acacaagaaa gctcgactct gaggtagagg aagaaactaa gttagaagaa accgatctac      1800
     acgatctaac aatccctgcg gtattaacaa taccaaaaac acaggaagag gatactgaag      1860
     attcagacct ggaaataata gaatccaagc ctaccataat ggcagacgaa accattgccc      1920
     agcgggcata cataaaagat atatcaagcg ccatacccga attcaatggc caaaaattga      1980
     atctacgaag attcataaca gcagtcaaat tggttgactt aacaaaagga ccatttgaac      2040
     acctggctat cgaagtaatt aagtcgaaaa tagtaggctc aaccttatac aaggtgcaaa      2100
     atgaaaccac tattacggca ataattgcga agctggaagc caatgtcgtc ggtgaaacat      2160
     ccgatgtact aaaggctaaa atgactaaaa caacgcagaa aggaaaaact gctgaaaaat      2220
     ttaccaatga aatagacaat ttacgaaagc tacttgaagc ttcgtatatc gatgaagggt      2280
     tatcagccga acatgctgat aagttcagca caaaagaagc catcaacaca atggttaaaa      2340
     actgtgagca tggcagactt aaaacaatac tagaagctgg taactttacc acaatgaatg      2400
     atgccatcac aaagtatata caatgtagta cggaaatgac gggcaacgcg aactccatat      2460
     tatacgcacg tggaggacaa gcctatcgag gtaattttcg tggtagagga ggccgtggta      2520
     actacaacgg tcactaccaa taccaaaaca atggatataa ccgatacaac ggtataatca      2580
     aagttatgat aaccggacca acaactataa taatagtaat aataataata ataataataa      2640
     taataataat aataataata ataataataa taataataat aataataata ataataataa      2700
     taataataat aataataata ataataataa taataataat aataataata ataataataa      2760
     taataataat aataataata ataataataa taataataat aataataata ataataattg      2820
     tccgaactgt acaagctacg acggaaaact cgtaaactcc cttaagatag aaacaaacgt      2880
     aaaacaaaca gttcatacaa tcaaccttaa tttcaatctt ttcgtttcac tccggaatga      2940
     acaaactaag aaattatata cattattagt tgatactggt gcagatattt cattaataaa      3000
     agaaaattca gattcattta acgtagatca cacaaatatt atttaaatat cagggttggt      3060
     gaaggaacaa ccaactctaa aaatttcaat agaacttctt tcagaactaa taatttagta      3120
     acaacagatt tccaattcca tgtgatggaa aattggcatc gacttcatga aaaaatataa      3180
     ttgtcaaata gacttaaaac cagaaaacga ttgcttatac taaggcccaa caatctcgat      3240
     cacccaataa acattccaat aaatcataca cttcaaaaca atttgacaat tctacgagca      3300
     aggtccgaag ttgtccgaaa aattgctata aacgcagcaa ccaagtatgt atttatacca      3360
     aaccaagaaa tccaaaacgg agtattcatt ggaaactcca ttgcagattc aaaaaataca      3420
     tttgtccgaa ttttaaatac tacaaataaa aacgaaatta tccacttaaa ggaactaaaa      3480
     attgaaccat tagatgacta cgaaatagta aaaacaaacg actaaatgac aacaatacag      3540
     atactttaaa taaattgaat aaaaatttcc cttcccaatt ttaaacaata cttaatgaat      3600
     tatgcacaaa atacatggac atattcggaa tagaaaccga atcaatatca acaaataatt      3660
     tttacaaaca aaaaattaga ttgaaagatg atgaaccagt ttatattaaa aactacagaa      3720
     ttcctcacag tcaaaaagaa gaagtagata aacaagtcga taaattaatc aaagataaaa      3780
     tcatagaacc ttcggtatca gaatataaaa gtccattatt aattgtaccc aaaaagtcac      3840
     tacccaattc aaccgataaa agatggcgtt tagtaattga ctaccgccaa atcaataaga      3900
     aaatcttatc cgataaattc ccattaccaa gaatagacga cattctcgat caactaggca      3960
     gagcaaaata cttctcatgt ttagatttaa tgtcaggatt tcatcaaata gaactcgaag      4020
     aaaactctcg gaatataacg tcattttcca cgagcaatgg ctcctatcgt ttcacgcgat      4080
     taccttatgg cttaaaaata gcaccaaatt ctttccaaag aatgatgaca attgcatttt      4140
     caggtatcga accttcacag gcattccttt atatggatga cctaattgtc atcggttgtt      4200
     cagaaaagca tatgattaaa aacctcacaa acgtttttga tttatgcagg aaacacaacc      4260
     ttaaattgca cccagaaaag tgcacatttt tcagacacga agtgaccttc cttggacata      4320
     agtgtactga caaaggtatt ctaccagaca acaagaaata tgaggtcata gaaaaatacc      4380
     cagtcccaac ggacgcagat agcgctagaa gattcgttgc attctgcaat tattacagaa      4440
     gattcattaa aaatttttcc gatttttcac gacacataac gcgattatgc aaaaagaatg      4500
     taaaattcga gtggacagat caatgtcaaa aagccttcga gtacctaaaa atacaactga      4560
     tgaaaccaac attattacag tatcccgact ttaataaaga attttgcata acaacggatg      4620
     caagtaaaca agcatgcgga gccgttctaa cacaagaaca taatggaacg catctaccag      4680
     tagcatacgc atcacgttca ttcacaaaag gagaaagtaa taaaaacacg acagagcaag      4740
     aattagcagc tatacattgg gcaattaaac actttagacc wtatatatac ggaaaacact      4800
     tcacagtaaa aacagaccac agaccactaa catatctatt ttcaatgact aacccaagtt      4860
     caaaattaac cagaatgaga cttgacttag aggaatacga ttttactgtt gaatatctta      4920
     agggaaagga caatcacatt gcagacgcat tatctcgaat aaccataacg gattaaaaaa      4980
     tattcaaacg aataataaaa ttctgaaagt cactaccaga aaccaaagta aacagaaaaa      5040
     ttcctgcgca ggaacagaac aagaaaaaat agatttgcct aggcaaactc taaatgaagc      5100
     ttctcagccc aacgtatacg aagtcattgt aaatgatgag gtacgaaaag tagtgacctt      5160
     gcgattaacg aattcacttt gcttactaaa gcatgggaag aaagttatag caagaattga      5220
     cgttagcgat atgtacacca atggaattct cgacttaggt cagttctttc aaaggcttga      5280
     aaagcaagcc ggtatactaa atatcagcca actcaaagtg gcaccgagcg aaaagatctt      5340
     tgacaccatc tcaatggaat ctttcaaaat aatgggcaat aaaatattac aatctctaag      5400
     agtagcgcta ctcaagccgg tgaccctatt atcaaataat gataaagaga aagaagcaat      5460
     actgtttaca ttccatgacg atccaataca aggaggtcat acaggcatag ctagaacatt      5520
     agcaaaatat gaaaaggtat tattattgaa aaacatgact tctaccgcac atcattacca      5580
     gagtgtaggt actgtggagc gaagccacag aacacagatt gcgttgaatc tgagggcaga      5640
     gcgggcgttt atcgcgatta cgcccatctg ccaggcttag gttttgacaa aaagggatat      5700
     tttattgaaa aatggaacaa ggcattagat agactttaaa accgtctgga ccctataagg      5760
     ttacaagtat agaagaaaat gataacatag taatttcaaa taataaaaac caaacagttc      5820
     ataaggatag gttaaagaat tttcactcat aattttcaac taaataatta gcaatggtct      5880
     gatcaaccaa ataagttcta ataatatata ctaatataac aaagtaaaac caataccaat      5940
     tctttcagat tccattttat aacaaaaaaa aaattatata tatatatata atattatata      6000
     taacaaaaaa caaataaata aaaaccaaaa caaatactaa ataattaaaa catttttaaa      6060
     ttttccaaaa tgctatattt taaacaatta aacataatga ctagaaaata acttcatttt      6120
     attacgttat ttttcaaaag gagggaga                                         6148
//
ID   Gypsy-24_DEl-LTR repbase;    DNA;    INV; 456 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 17.04, Created)
DT   16-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DEl_;
KW   Gypsy-24_DEl-I; Gypsy-24_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-456
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 546-546 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 456 BP; 146 A; 106 C; 88 G; 116 T; 0 other;
     tgtagtatgc acacatattg aatacccact gtaccaagag tacttaaagg gtacacactg        60
     taacactttg ttgcagtgtt tacataatca aacatgtccc ggtcataaac ccaagtgtcc       120
     gaaatatgaa ccgatcgcta tgccttggac tacacaccga aagtgctagc gtcggcataa       180
     ttgcaacacg aacggacctc atgtgcatat acctcgcgct cccgcttaag agagcatagc       240
     ccatatactt aagcatatac atagccgtct ctctgccgcc gtctgtgggc agcgcagcga       300
     cgagacttag ccttacttag aattaaaaga ataatgtaag aaccagaaac atttaaacgt       360
     tggagcggca ccattgctgc ttctacaaat aaagaatcaa attaatattt caaagaactt       420
     gatgtttcaa tgtgagatct ggaaggttct acttca                                 456
//
ID   Gypsy-24_DMel-I repbase;    DNA;    INV; 6242 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6242
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 738-738 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           610..2034
FT                 /product="Gypsy-24_DMel-I_1p"
FT                 /translation="MLRDDNSDSSGEDIIQEYKNLLATRVKKTEADLEERA
FT                 TTSRAIHSKPLRKSALDFAIAGSTQQKQKMEHDQIASMEAAISAALDGEKM
FT                 QFDEKLETIRGELKLLKKKKTTPSGSGGGGTQCGCFELFNTPQVEAFKEIT
FT                 ILPGVDCCEPLDIIKSVPEFEGKQETYVSWRQAAKAAYKVFEPYNGSSRHY
FT                 QAVAILRNKVRGPAAAVLASFNTVLNFDAILARLDFTYADKTPTHVIQQEL
FT                 SLSRQGDLPLLKYYDEVEKKLTLLTNKIVMTHDAAAAAVLNEQFRNDALHA
FT                 FVSGLKKSLKVAVFPAQPRDLPTALXLAQEAESSNDRSVFAASFARHNEEK
FT                 LNKPNTQRPFGWRNPSQQNSYNYEQGQNLGAIQKNPHFRKIQRGGNHQTGS
FT                 LRQQSRPYAGNTQSQPPPPEPMDVDSSSRCRQPTKSARTQQKINYCQNQRS
FT                 EEEEYNQVAHERVEQIEDDFDTDDVCNFLG"
FT   CDS           join(1986..2864,2842..3588,3537..3860,4071..4556)
FT                 /product="Gypsy-24_DMel-I_2p"
FT                 /translation="TNRRRLRHRRRLQFFRVKSLLPYITRTLAGKEIKLLM
FT                 DTGTSKNYIAPRPGLKGIAAVEKPFSVRSIHGHTKIEHKCLISLFNVQSHF
FT                 FILILKDFDGIVGLDLLKQVNARLDLTKNILETSNGVEKIQFSKTENVNFI
FT                 QIDDKDVPPAIKAAFDNMIAKNCRAFADTDGALPYNINTIATIKTDGEPVY
FT                 SKSYPHPMGVTEFVNAEVKQLLANGVIRPSRSPYNNPTWVVDKKGFDQNGV
FT                 KKKRLVIDFRKLNQKTVDDKYPIPSISTILSNMGSQNISQHSTLKRAFTKS
FT                 SSGLSPNRVSRERPRKNSFXGLPFGLKNAPSIFQRAIDDVLREGISKICYV
FT                 YVDDVIIFSKTKEDHVKDIQWVLGKLLEAGMRVSQESKFFKKSVEYLGSRS
FT                 PEKVKAIKEFPMPKTLFDLRSFLGLASYYRCFIKNFASIAAPLTGILKGEN
FT                 GKTSKYRSKKININMTEEQKTTFKRLREILASEDVLLSYPDFKKPFDLTTD
FT                 XSGYGLGAVLSQDKRPNIITMISRTLRDNEKNFATNEQELLAIVWVRKKFC
FT                 NQRARASRHSLGVKESRVYTDHQPLTFAISDKNPNAKLKRWNGIIEDYGAK
FT                 LIYTPGEENLVAHALSRQNVNALEDTYELDTLSRPKQKGLGRHIRVRRRHN
FT                 THPLIEAFPNTTFRYSKHVVQDITDKTEQREIATAEHNRAHREAQENVKQI
FT                 LGDYFFQKMLRLRTETASHCKICSMAKYSRHPNKHKIGQTPIPSYAGEILR
FT                 IDIFSTDGTLFLTCVDKFSKFAIVQAIASRAIVDVKSPILNIANFFPKVKT
FT                 IYCDNELSDP"
FT   CDS           join(4934..5248,5265..5381,5362..5700,5643..5912,
FT                 5893..6240)
FT                 /product="Gypsy-24_DMel-I_3p"
FT                 /translation="TTVEADLATTVPYLTSYEDYADQTEKLTVGFTDDHRT
FT                 PVVKADLQHIRNLVATLKIHHRGTRSINILGTTLKVIAGTPDFDDWEQIKF
FT                 NQEQLSRTEKNQNELKITKRATNSLNRIQKSDGGKEAHLLEIILAKNRIII
FT                 TDLEASSQIWKHNPGKTKYLNPAILDSTDISELKEKQPTNISLVEILEVSS
FT                 VSVFPNYEIIHFLIKVPDAKLVCKKIAVYPVQHHNRILDFDDGNLVAECAA
FT                 RIISIGDCKTTVGATFMRRSDYKHRGLQDNSRSNFLKELQSNTCARQMVAG
FT                 XIAHCNTLPGHLNSVAIVDHANIIVNDANMTIIDDNGLVQTVAGTYWLITR
FT                 TKFPLLEQSFPKWXLVCQPARELKKKTVAAMTLVNVTSHQDRLSLPLLHEL
FT                 SLRNLHHIGTIXERFLLGSLXSYSLTVLVLACVIWLSRLIWIANRRTNSKS
FT                 GDDIEXGGRRDGDHLKEG"
XX
SQ   Sequence 6242 BP; 2213 A; 1357 C; 1275 G; 1383 T; 14 other;
     tggcgcccaa cggccgaaca cccacggcag tgcacagcag gaaaaaaagc agtgcagaaa        60
     caacagtgca aaatagcaca gcaaaacgac aaaaaacaag ggagctgcag ggaatacccg       120
     cgccccctcc gagggagaac acagccggca gcagaaaatt tcaataataa ataattcgaa       180
     ggaaaaaaaa aatatgtaag tgggcttttt gtcaaaaaaa actaattttt caaaaaatta       240
     cttatgaaat tggtaaaata aaataaaaac tgttaacagt aagtgtaaag tgccgactct       300
     tcccaaatct gtgagaggtt aaaatagagt atagagggat gcgaaaataa aaacgcgtga       360
     gtgcaaaata ttccatctta ttattttcat acaccgttct gttagtaata cactggaaat       420
     ttttttccgt actcgttttt ctagtaacca gtmgaatttt cttacaatta cccacaacag       480
     accatttcta ccttgctaca cagggaagag aatgacaaaa ttctaaatta ttttttcaca       540
     aaaatacaca gaamatttta tacaagtttt tcgcaagcga agaaatttct ttcttctgca       600
     cattaactca tgctcagaga cgacaatagc gactcgtcag gggaagacat aattcaggag       660
     tataaaaatc tgctagcaac aagggtaaag aaaaccgaag cggacttaga agagagagca       720
     acaacaagca gggccataca cagtaagcca ttaaggaaaa gtgcgttaga ttttgcaatc       780
     gcaggaagta ctcaacaaaa acaaaaaatg gaacacgacc aaatcgctag tatggaggca       840
     gccatcagcg ccgccttaga tggagaaaaa atgcagtttg acgaaaagtt ggaaacaatc       900
     aggggggagt tgaaattatt aaaaaaaaaa aaaaccacgc ccagtggaag cggggggggg       960
     ggtactcagt gtggttgttt tgaattattt aacacgccac aagtggaagc attcaaagaa      1020
     attaccatcc taccaggagt ggactgttgt gaacccctag atataataaa atctgtcccg      1080
     gaattcgaag ggaaacagga aacttacgtt tcttggaggc aggctgcaaa ggcagcctat      1140
     aaggtattcg agccttataa tggcagcagc cgacattatc aggccgtcgc aattctcaga      1200
     aataaagtaa gagggccagc ggcagctgta ttagcctcat ttaatacagt attaaacttt      1260
     gatgccatac tggcgcgcct cgactttaca tatgcggaca aaactccgac acatgtaatt      1320
     caacaggaac tgagcctttc aaggcaaggg gatttgccgt tactcaagta ttacgatgaa      1380
     gtagaaaaga aattaacact tctaacaaac aaaatcgtaa tgactcacga cgcggccgca      1440
     gcggctgttt taaatgaaca gttccgaaac gacgcgcttc atgcgttcgt gtcaggtcta      1500
     aaaaaatcac tgaaagtagc tgttttcccg gcacaacctc gggatctgcc aacagcctta      1560
     kccctggccc aagaggccga atctagcaat gataggagtg tgttcgcggc tagttttgcc      1620
     aggcataacg aagaaaaact taacaaacca aacactcaac gaccattcgg gtggagaaat      1680
     ccatcacagc aaaattcata taactatgag cagggtcaga acctaggggc aatacaaaaa      1740
     aatccccatt tcagaaaaat ccaaagggga ggaaaccatc aaaccggctc gcttaggcag      1800
     cagtctcgtc cgtatgcggg aaacactcag agccagccgc ctccacccga accaatggat      1860
     gttgatagct catctcggtg caggcagcct actaagtccg cacggactca acaaaaaatt      1920
     aactattgcc agaaccagag gtcagaagag gaagaatata accaggtggc acatgagagg      1980
     gttgaacaaa tagaagacga cttcgacaca gacgacgtct gcaatttttt agggtaaaat      2040
     ccctgctccc gtatatcact cgtacgttag cagggaagga aatcaaatta cttatggata      2100
     ctggcacttc aaaaaattac atagcaccac gcccagggct taaaggcatc gcggcagtag      2160
     aaaaaccatt tagcgttagg tcaattcatg gccatacaaa aatagaacat aagtgcctaa      2220
     tttctctgtt taatgtacag tcacattttt ttatattaat tcttaaggac tttgatggaa      2280
     tcgtcgggct tgacttactt aaacaagtga atgcaagact cgaccttacc aaaaatatac      2340
     tagagactag taatggggta gaaaaaatcc aattctccaa aaccgaaaac gttaacttca      2400
     tccaaataga cgacaaagac gtcccaccgg caataaaagc cgcttttgac aatatgatag      2460
     caaaaaattg tagggccttc gccgacacag atggagccct accatacaac ataaatacaa      2520
     ttgcaaccat aaaaacagac ggagagccgg tatactctaa atcatacccg caccccatgg      2580
     gcgtaacgga atttgtaaac gcggaggtta aacaacttct tgcgaatggc gtaataaggc      2640
     catcccgatc accctacaac aacccgactt gggttgtaga caaaaaggga tttgatcaaa      2700
     acggggtaaa aaagaaacgg ttggttatcg actttagaaa gttgaaccaa aaaaccgtgg      2760
     atgataagta ccctattcct tcaatttcga ctatattgtc aaatatgggg agtcaaaata      2820
     tttctcaaca ctcgacctta aagcgggctt tcaccaaatc gagttagcag agaaagaccg      2880
     agaaaaaaca gctttckcgg actaccattc gggctcaaga atgccccaag tatttttcag      2940
     agagctatag atgacgtttt aagagaagga atctcgaaga tatgctacgt gtatgtcgac      3000
     gatgttatta ttttctcaaa aacaaaagag gaccatgtca aagacataca gtgggtcctc      3060
     ggaaagctgc tcgaagcagg catgagggta tctcaagagt cgaagttttt caaaaaaagc      3120
     gtcgagtacc tggggtcccg ctcacctgaa aaggtgaaag ccataaaaga gttccccatg      3180
     ccaaaaactc tttttgacct cagatctttt ctgggtttag caagttacta caggtgtttt      3240
     atcaaaaact tcgcgtcaat cgcagccccc ctaacgggaa tccttaaagg tgaaaacggg      3300
     aaaacaagca agtatcggtc caaaaaaatt aatataaata tgactgaaga acaaaaaaca      3360
     acatttaaga ggctaagaga aatactggca tcagaagacg ttcttctttc atacccagac      3420
     tttaaaaaac cgttcgactt aacgacggat kcatctgggt acggacttgg agccgtatta      3480
     tctcaagata agcgcccaaa tatcattaca atgatatcgc gcacactgcg tgataacgaa      3540
     aaaaattttg caaccaacga gcaagagctt ctcgccatag tttgggtgta aaagaatcgc      3600
     gcgtatacac cgaccaccaa ccactcactt tcgccatctc ggacaaaaat cctaatgcga      3660
     agctaaaacg ttggaatggg attatcgaag actatggggc gaaacttatt tacacgccag      3720
     gagaagaaaa ccttgtagca cacgcgttat ctcgccaaaa cgtaaacgca ttagaagaca      3780
     catacgagtt agacacatta tctcgaccaa agcaaaaggg tttgggaaga cacattcgag      3840
     tcagacgccg ccacaataca tagcgaagaa tcactgacct atacaatcga cacaacagac      3900
     aagccaatta attgtttcag gaaccagatc attatagaag aggttacaaa atgaggcaca      3960
     taataaggtt ttccgaccgg gaaaacctta taaacaccat taaagatgta gtgaatgcgg      4020
     gagtcgtcaa ggcaatacat tgcacacttc taatcctagg atttatttaa cacccactaa      4080
     tagaagcatt cccaaatacc acattcagat attcaaaaca tgtggtgcaa gatattacag      4140
     acaaaacgga acaaagggaa atcgccacag ccgaacacaa tagggcccat cgcgaagccc      4200
     aagagaatgt gaagcagatc ttgggagact actttttcca aaaaatgctt cgcctaagaa      4260
     cggaaacggc atctcactgc aagatctgtt ctatggccaa atatagtaga caccccaata      4320
     aacataaaat cggacaaacg ccaattccct cttatgctgg agaaatactc cgcatcgata      4380
     tattctcaac agatgggacc cttttcctta cgtgtgtcga caaattttca aaattcgcta      4440
     ttgtacaggc aatcgcatca agggcaatcg tagacgtaaa gtcaccgata ttaaatatag      4500
     ccaacttctt tccaaaagta aaaaccatct actgtgacaa cgaattaagt gacccttaat      4560
     tcagaaacta ttaaatcagt cctcctcaac aatttcaaca tttcaattcc aacgggcagg      4620
     tagaatagtt tcacagcaca ctcgcagaaa tagcccggtg cctcaaaata gaaaaaggga      4680
     taaacgacac cacagaggta attcttttag caactgccaa gtataataga accatacatt      4740
     cggtgacaga caaaaaacca atagaaataa tacattcaac accagtagaa ttcgagaaag      4800
     aaattagcga caaaatttag caagcacaga ataggacttg gaaaattcaa taaaggacgg      4860
     ataaagccgg gcgataagtt ttcttaaagt caaacaaacg cttgggaaac aaactctcgc      4920
     cgctctgccc tgaacaaccg ttgaagcaga cctggcgacc acggtcccat acttgacgtc      4980
     atacgaagac tacgcagacc agacggagaa gcttacggtg ggctttacag atgaccacag      5040
     gacaccagtg gtaaaggcgg accttcagca tattcgcaat ttagttgcta cccttaaaat      5100
     acaccatagg ggaacgagga gcattaatat actgggaaca acgttaaagg ttattgcagg      5160
     aactcccgac tttgatgact gggagcaaat aaaatttaat caggagcaat taagtagaac      5220
     ggaaaaaaat caaaacgagt taaaaatata aaatttcaag atagactaaa cgggcaacca      5280
     actcgttaaa tagaatccag aaatcagatg gaggtaaaga agctcacctc ttagagatca      5340
     tcttagcgaa aaatagaata atcatcacag atttggaagc ataaccctgg caaaactaaa      5400
     tatttaaacc cagctatcct ggatagcacc gatataagcg aactcaaaga aaaacagccc      5460
     acaaatatta gtttggtaga aatattagaa gtatctagtg taagcgtttt tccaaattat      5520
     gaaataattc atttcctcat taaagtacca gacgctaagt tagtatgtaa aaaaatcgct      5580
     gtttacccgg ttcaacacca caaccggatc ctagatttcg atgacggaaa tctagtcgct      5640
     gaatgcgccg ctcggattat aagcatcggg gactgcaaga caacagtcgg agcaactttc      5700
     tgaaggaact ccaaagcaac acatgcgcac gtcaaatggt tgcggggmct attgcacatt      5760
     gtaatacgct tccgggacac ctgaactcwg tcgccattgt ggaccatgcc aacatcatcg      5820
     tcaatgatgc caacatgacc atcatagacg ataacggtct cgtccagacg gtagctggta      5880
     cctattggtt aattactcga acaaagtttc cctaaatgga amctggtatg tcaaccagct      5940
     agggagctca agaaaaaaac agtggcggcm atgaccttgg tgaatgtcac ttcacaccag      6000
     gaccgactaa gcctccctct attacatgag ctgagcctga gaaacctcca tcacatcgga      6060
     actataawgg aaaggttcct attgggatcc ctcktcagct actccctaac cgtgctagtt      6120
     ctagcctgcg tcatctggct tagccgtctg atttggatag ctaatcgacg saccaactca      6180
     aagagcggtg acgacataga ascaggaggc cgccgggacg gsgaccattt aaaggaggga      6240
     gg                                                                     6242
//
ID   Gypsy-24_DMel-LTR repbase;    DNA;    INV; 326 BP.
XX
AC   .
XX
DT   15-AUG-2018 (Rel. 25.03, Created)
DT   15-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-326
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 723-723 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 326 BP; 112 A; 76 C; 74 G; 64 T; 0 other;
     agttatcacg cgcaacgaag atattgcgaa actgccaagt tgcagactgg acggaaaggc        60
     ccgcacgcga aagacagaaa ctgctgaata cgcagtccgt ggtgcagtgc tagatactct       120
     gccggatcac gctgccaaca agtggccgtc gtcaagcgga cacaaagtcg ctgacacgac       180
     acttaatcga ccgcgcagtc gagagtccga aactccgccg aagaacagcg aaacatttag       240
     gttcagtttt agagaataac tccatcgatt aacatcgatg caaaaattgt aatctaataa       300
     atttgaataa aaagcaatta aataat                                            326
//
ID   Gypsy-24_DMo-I repbase;    DNA;    INV; 6425 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6425
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2962-2962 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           884..2254
FT                 /product="Gypsy-24_DMo-I_1p"
FT                 /translation="MSFAGPYREVKREIISDEESSPLPSDDNLEDFDNSIV
FT                 GFAPQLPPQPTMDAAGVDRIVQAALLAQKQAFDAQLDALRQQVSTLRVAAP
FT                 EIQVYQRIVVDPTVQCPISLDVVKTMPDFDGAQEDYVAWRQSATDAYELFR
FT                 SHPTSSVHYQAVTIIRNKIRGNARALLTSHNTVLNFDAIIARLDCTYADKT
FT                 SLRLLRQNLEMVRQGDSSLMQYYDDVERKLTLVTNKIIMTHEAAMATLLNN
FT                 EVRADALHAFVSGLKRSLKAIVFPAQPGDLPAALALAREAEASIERSNFAA
FT                 SYARVMEERAHSNEHNKSQTRQDKYGRNNNPNQEKNPHFVKKQGKQPQSGD
FT                 HAQQQPKPPQQSEPMDVDPSMSKVRQTTNWRDRPAQQSDNGQAAKRPNSSE
FT                 RHTGPRRQRLNRVVQHNEYDEAAAEAVGEILDDSDSLGDNDLVNFLEVTPG
FT                 YRSSSGSWLGEQ"
FT   CDS           2128..5289
FT                 /product="Gypsy-24_DMo-I_2p"
FT                 /translation="SCSRSCWRNTRRLRLPRRQRPGQFFRGHSRLPFIERQ
FT                 LAGRTVKILIDTGAAKNYIQPIKELKNIKPVDTPFTVSSVHGSNKISQKCT
FT                 VNIFGTTAQFFLLESLQPFNAIIGFDLLTQVGATLDIEKGTINYGQTNEKL
FT                 RHHFCDNVNFTNVNDIVVPEMVKEDFKKMILKNIKAFSTSNEALPFNTSVI
FT                 ATIRTEDDQPIYSKLYPHPMGVADFVTKEIRDLLNNGIIRPSKSPYNSPTW
FT                 VVDKKGYDEEGIRKKRLVIDFRKLNEKTIADKYPMPNISMILANLGKAKYF
FT                 TTLDLKSGYHQIYLAEQDREKTSFSVNGGKYEFCRLPFGLKNAGSIFQRAI
FT                 DDVLREQIGKSCYVYVDDVIIFSENEKDHVRHIDWVLKSLCRANMKVSKEK
FT                 TQFFKQSVEYLGFIVTMGGAKSDPEKVKAIKEFPEPKNLYELRSFLGLASY
FT                 YRCFIKDFAAIARPLTAIMKGENGSVSKHLSRKTIVNFDDAQRHAFQKLRD
FT                 ILASEDVILRYPDFKKPFDLTTDASSYGIGAVLSQEGKPITMISRTLKDCE
FT                 TNYATNERELLAIVWALGKLQHYLYGTRDINIYTDHQPLTFAVSDRNPNAK
FT                 IKRWKAYIDEHNAKIHYKPGKENFVADALSRQNINALQEEAMSDAATIHSE
FT                 LSLTYTVETTEKPLNCFRNQIVLEQAQFPRYRKFILFGEKNRHIIHFTEKD
FT                 GVINDIKDVVNPSVVNALHCDLPTLAAVQHELVRSFPNTKFLYCKNFVSDI
FT                 TDKSEQREIVEAEHNRAHRAVQENIKHILRDYFFPKMTKIANEVVANCRVC
FT                 AKAKYDRHPKKQELGLTPIPSYVGEMLHIDIFSTDKKMFLTCIDKFSKMAV
FT                 VYPVTSRTIVDVKTPILLLVNLFPRIKTICCDNEAAFNSETITSLLKNGYN
FT                 IDVVNTPPLHSVSNGQVERFHSTLAEIARCMKLDKKIDDTVELILRATTEY
FT                 NRTIHSTTDMSPIEVMYSVSGEVAENIKRKLEHAQKNNMNRCNPTRQNRVF
FT                 EVGETVLVKSNKRLGNKLTPLCSEEKVQADLGTSVLIKGRVVHKDNLK"
FT   CDS           5623..6423
FT                 /product="Gypsy-24_DMo-I_3p"
FT                 /translation="MLITEIQNLMLTVTLARSNIINPTIFDNQDLESILTE
FT                 HPTSVPIVCLMETSNIRVLQSDNIVHIIIDYPMIKSICKKVSIFPVSHEHI
FT                 VLQLDADTVAECDNEALAVTSCAATTCAPFCKLAVHDTCARGLHSGSVALC
FT                 RTQPSHLETVTQVDDGVLTINESPAQVTTDDGPAISVNGTFPVTFETSAII
FT                 NGTKYVNQSEALSEKPGIAVSPLLNVISHDPVLSMPHRQRMNHHNLQVWRR
FT                 RRASHEIQGGVENFSLNEVGQNLKGR"
XX
SQ   Sequence 6425 BP; 2193 A; 1556 C; 1389 G; 1286 T; 1 other;
     tggcgcccaa cgtaataaaa gtactcacga gagccctctc aattaataag tgcatgtgtt        60
     aaacacactt aacaacaaaa accaaagtgc aactttaaga ataaattgac aagaaacatc       120
     ttacttgtga aagtgaagtg caaaagcaat cgtaaaaaag aaaaaaactc tcagcgaata       180
     accaaaactt tcacaaagct caagcaagtg catacaccaa aggtttaaaa ccaaaatatt       240
     tatcaagtgc actcaccaaa ggttcgacac cacactaact atcgagtacg cacaccaaag       300
     gtttaaaacc aaaatatata tcaagtgcac tcaccaaagg ttcgacacca cactaactgt       360
     caagtacata aaccagaggt tcaaaaccag aataattatc aaaggcatac accaaaggtg       420
     cggcactaag ctaactatca agtgcataca ccaacggtgc gaaactaaaa atcaaaagcg       480
     aatttccgca ccaaagtgcg aaagcaaaaa ctcattctgt cacagcaccg gaccggtgtt       540
     ggcagcgttt gtcacgtaat cggaccgatt acggcagcgt agcaaattaa agcaagcaat       600
     ccactcagaa gactacgacg acgtcagcag agagccggaa acaccaggaa cagtcaagcg       660
     ccccttcaaa taaacatgta agtggcgtgc tcagttaatt cactccagat aaaaaaaaaa       720
     aaaaaaaaaa aaaaaaaaaa aaattttttt tttttttgtt ttcttttaat attaactcga       780
     caagcgtact gtgtccattc tttaacaaag catttatccg tgttcaaaaa aaaaaaaaaa       840
     aatacaagcc gaatgtcgat tcgtgattct gtgtaggttg ctaatgagtt tcgcaggccc       900
     gtatagagaa gtaaaaagag agattattag cgacgaagag tccagccctc tcccatctga       960
     cgataacctc gaagactttg acaatagcat tgtaggtttt gcccctcaac ttccccctca      1020
     gccaaccatg gacgccgcag gtgtcgatcg gatagtgcag gcagcgttgc tggcccagaa      1080
     gcaggcgttc gatgcgcagc tcgacgcttt gagacagcaa gtttctacct tgcgagtcgc      1140
     ggccccagaa attcaagtgt accaaaggat agtagtcgac cccacagtcc aatgcccaat      1200
     ctcgctagac gtggtaaaga caatgcccga cttcgacggg gctcaagaag actatgttgc      1260
     ctggcggcag tcagcaacag acgcttacga gctatttagg tcccacccta ctagcagtgt      1320
     tcattaccaa gcggtgacca taattagaaa taagattagg ggaaacgcaa gagccctgct      1380
     tacgtcccac aacacggttc ttaattttga cgcgatcatt gccaggctgg attgcacgta      1440
     cgcggacaag acctcactaa ggctcctccg ccaaaacctg gaaatggtca gacagggcga      1500
     ttcttctctc atgcagtact acgacgacgt agaacgcaag ctaactttgg taaccaacaa      1560
     aatcatcatg acacacgaag ccgccatggc gaccttatta aacaacgagg tcagggcaga      1620
     tgcccttcac gcattcgttt cgggtttaaa aagatccctc aaggccatcg tcttcccagc      1680
     ccaacccggc gacttgcccg ccgccttggc cttagcacga gaggccgaag ctagcattga      1740
     gcgcagcaac ttcgctgcgt catacgcgag ggtgatggaa gaaagagctc attcgaatga      1800
     gcacaacaaa agtcaaacca gacaggacaa atacggtagg aataataacc ctaaccaaga      1860
     gaagaaccca cacttcgtaa aaaaacaagg gaaacaacct caaagcggcg atcacgcgca      1920
     gcaacagccg aaaccgcccc agcagtcgga gccgatggat gtagacccgt caatgtccaa      1980
     ggtccgtcag acaacaaact ggagggacag acccgcacag caatccgaca atggacaagc      2040
     cgcgaagaga cccaattcgt cagaacgaca cactggcccc aggcggcaaa gactgaaccg      2100
     agtggttcag cataacgagt acgatgaagc tgcagccgaa gctgttggcg aaatactaga      2160
     cgactccgac tccctaggag acaacgacct ggtcaatttt ttagaggtca ctcccggcta      2220
     ccgttcatcg agcggcagtt ggctgggaga acagtaaaaa tcctaatcga tacaggggcg      2280
     gcgaagaatt acattcaacc cataaaggag ttgaaaaaca taaaacccgt cgataccccc      2340
     ttcacagtta gctccgttca tggatctaac aaaatcagcc aaaagtgtac agtaaacatt      2400
     tttggaacga cagctcaatt tttcctattg gaatctcttc agccgttcaa cgccataata      2460
     ggcttcgacc tgctaacgca agtaggagca acattggaca ttgagaaagg tacaattaat      2520
     tatgggcaga ctaacgaaaa gttacggcat cacttctgtg acaacgttaa tttcactaac      2580
     gtcaacgata tcgtggtacc cgagatggta aaagaggatt ttaaaaaaat gattctgaag      2640
     aacatcaagg cattttcgac ctccaacgag gcactgccgt tcaacacttc ggtcatagcg      2700
     acgatacgca cagaagacga ccagcccatc tactccaaat tgtacccaca tccaatggga      2760
     gtggccgact tcgtcactaa agagatcagg gatctcctaa acaacggcat cataaggcca      2820
     tcaaaatccc catataacag cccgacatgg gtcgttgata aaaagggata cgatgaggag      2880
     ggtatcagga aaaagcgact cgtcatcgat ttcaggaaac tgaacgaaaa gaccatcgca      2940
     gacaaatacc cgatgccgaa tatctcaatg atcttggcca acttaggcaa agctaaatac      3000
     ttcacgacct tggatctaaa atccgggtac catcagatat atttagcaga gcaggacaga      3060
     gaaaaaacat cgttctccgt aaatggagga aagtacgaat tttgtaggtt gccctttggc      3120
     ctgaagaatg cgggcagtat ctttcagcgg gcaatcgacg acgtcctacg agaacaaatc      3180
     ggaaagtcgt gctatgtgta cgtagacgac gtcataattt tttccgaaaa cgaaaaggac      3240
     catgtcaggc acatagactg ggttctcaaa agcttatgcc gcgctaacat gaaagtctca      3300
     aaggaaaaaa cgcagttctt taaacaaagc gttgagtact tgggattcat agttaccatg      3360
     ggaggagcaa aatccgaccc cgaaaaggtt aaagcaataa aagagttccc agaaccaaag      3420
     aacctctacg agctgaggtc gtttctggga ctggccagtt attacagatg cttcataaaa      3480
     gattttgctg ccatagcgag accgctgacg gcaataatga aaggcgaaaa cggatccgtc      3540
     agcaagcatc tctcacggaa aaccatcgtg aatttcgacg acgcgcagag gcacgcgttc      3600
     cagaagctaa gggatatctt ggcatcggag gatgtcatcc tgaggtaccc ggactttaaa      3660
     aaaccatttg acctgacgac ggatgccagc tcatacggca taggggcagt attatcccaa      3720
     gaaggaaagc ccattacaat gatctcgagg actctaaaag attgcgagac caactacgct      3780
     acaaacgaaa gagagctgtt ggccatcgtg tgggcgttag gtaaactaca gcactacttg      3840
     tacggaactc gagacatcaa catctatact gatcaccagc ctcttacctt cgctgtttca      3900
     gataggaacc ccaacgcaaa aattaagaga tggaaagcgt acatagacga acataacgct      3960
     aagatacact acaagccagg caaggaaaac ttcgttgcag acgccctttc aagacagaac      4020
     atcaatgctc ttcaggaaga ggccatgtcc gatgcagcca caatacacag tgagctgtcc      4080
     ctgacctaca cggtcgaaac gacggaaaaa cccttaaatt gctttagaaa ccagatagtg      4140
     ctagaacagg cccagttccc aagatatcgt aagttcatac ttttcggcga gaaaaaccgc      4200
     cacatcatcc acttcacaga aaaggacgga gtcataaatg acatcaaaga cgtcgtgaac      4260
     ccgagcgtgg ttaacgccct tcactgcgat ttgccaacgt tggcggcagt ccaacatgag      4320
     ttggtcaggt cattcccaaa cacaaaattc ttatactgca agaattttgt ctcagacatt      4380
     acggacaagt ckgaacaaag agaaatagtt gaggccgagc acaatcgagc tcacagggca      4440
     gtacaggaaa acatcaaaca cattcttagg gattacttct tccctaaaat gacaaaaata      4500
     gctaatgagg tggtagcgaa ttgtagagtt tgcgccaagg caaagtatga ccgacacccg      4560
     aaaaaacagg agttaggttt aaccccgatc ccctcatatg tcggcgaaat gttgcacatc      4620
     gacatcttct ccaccgacaa gaagatgttt ttaacttgca tagacaaatt ctcaaaaatg      4680
     gccgtggtat atccagtaac gtcccgaacg atagtagacg tcaagacgcc cattttgctg      4740
     ctagtaaact tgttccccag aatcaaaaca atctgctgcg acaacgaggc ggcattcaat      4800
     tccgagacga tcacgtctct tctaaaaaac ggctacaaca tagacgtcgt aaacacgccc      4860
     cctctgcaca gcgtttctaa cggacaagtc gaacgcttcc acagcacctt ggcggaaata      4920
     gccagatgca tgaagctaga caaaaaaatt gacgataccg ttgagctcat cctaagagcg      4980
     acaacagaat acaaccggac aatacattca acaactgaca tgagcccaat cgaggtcatg      5040
     tactcagtct caggggaagt cgcggaaaat ataaagcgaa aactcgagca cgcacaaaag      5100
     aacaacatga acaggtgcaa cccgaccaga cagaacaggg tgtttgaagt cggagagacg      5160
     gttttagtga agagcaacaa aaggttggga aacaaactta cccccttatg ctcagaggaa      5220
     aaagtgcagg cagacctagg aacgtctgtt cttattaagg ggagggtggt ccacaaggac      5280
     aacttgaagt aggaaaaaaa aaaaaaaaaa aaaaaaaaaa atgaaaagga aaataaatga      5340
     aaagaaaaat aaaaaaaaaa taaatagaaa aaaaaatgaa aaagaaatga atgaaaaggg      5400
     aaaaataaat aaaaaaaaaa aaaatgaaaa atgaaaaaga aataaatgaa aaggaaacaa      5460
     aaaaaaaaca tctagaatta gtcacttctc gccggacagg cccctcgtcg tgtccctact      5520
     tcttattacg gttgctaaag ctcggatcac cgactacccc cactcacgaa acacgaaatt      5580
     ggcacgcccc gcttgtatga agctcttcta gctaggaaca ggatgcttat aacagagatt      5640
     caaaatttaa tgctcacagt aacgctggcg aggtcaaaca taataaatcc cacaatattt      5700
     gataatcaag atttggagtc aatattaact gagcacccca catctgtccc cattgtctgt      5760
     ctgatggaaa cttccaacat aagggtacta cagtccgata acatagtaca cataatcata      5820
     gattatccca tgattaagtc tatatgtaag aaggtcagca ttttcccggt ctcgcacgaa      5880
     cacatcgtgc tacagctgga tgccgacacc gtagcggagt gtgacaacga ggcactggcg      5940
     gtcactagct gcgcagcaac aacatgtgcg cccttctgca agctggcggt acatgacact      6000
     tgcgcccgtg gactacattc gggatccgtg gcactctgcc gcacacaacc cagccacttg      6060
     gagactgtca cccaagtaga cgacggcgtt ctgaccataa acgaaagccc ggcccaagtg      6120
     accacggacg acggcccagc aatatcggta aacggcacct tccccgtcac tttcgaaacg      6180
     tcggccataa tcaacgggac caagtacgtg aaccagagcg aagcccttag cgagaaacca      6240
     ggcatcgccg tgtcacctct tctcaacgtg atcagccacg acccagtcct cagcatgcca      6300
     caccgtcaga ggatgaatca ccacaacctg caagtctgga ggagaagacg agcctcgcac      6360
     gagatccagg ggggggttga aaattttagt ttgaacgagg tcggtcaaaa tcttaagggg      6420
     agagt                                                                  6425
//
ID   Gypsy-24_DMo-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-381
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2951-2951 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 381 BP; 114 A; 90 C; 72 G; 105 T; 0 other;
     agttaacatt aacatagcat aagcatattt ccctctcact tgccgacgct tgttacatgg        60
     tgccgacgaa acagcattga attcagcgcc ctgaccacag cggacagcaa cagtaatctg       120
     acaccttaca ttagtgtggg tgtgtcagca tcactttcga gcaaatcggc acgccgattc       180
     gctgtcccac acttttagtt tttagttctg ctttgtattc tcgagaaaac gtcacgaaga       240
     aatccattac tccggcacca gccgtaaata aaaagtcttt tattctctca gcctaagcga       300
     gagataacgg ggaaaataac gtatttaaaa gtcttttatt ctctctgcct aagcgagaga       360
     taacggagaa aataacttat t                                                 381
//
ID   Gypsy-24_DWil-I repbase;    DNA;    INV; 4111 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   21-DEC-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DWil_;
KW   Gypsy-24_DWil-LTR; Gypsy-24_DWil-I.
XX
NM   Gypsy-24_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4111
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4111
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..4104
FT                 /product="Gypsy-24_DWil-I_1p"
FT                 /translation="MAESLAGEFGEISLAGVFEEKKEVIDSTSAKYTQRNP
FT                 IMTTVGSLEPFDLGQPNKWGSYLERFKLFLLANDVKDEGRKKASFLTLVGA
FT                 PVYDLLTSLAFPNQVSTLPLDQIEKILTDHLCPRPSEIAAFYHFHKRDQHP
FT                 DETVGNYLAALRALAVGCNFGAALDRMLRDRFVCGMRDESLQRSFLADTEL
FT                 TVQKVLERATTSEAAAASAKAIRQPNETIHSIKSQRPQQPYKGKGQQCAGC
FT                 AGPHGRQQCPYREAICHGCGRKGHLKRVCRSNDSSNDVHPVKGKNSRGKSV
FT                 NLISNLVSLKKRITVQINGKSCTFEVDSGSDVTMMTLRTYDRIWPTNKPKV
FT                 YNYDPGFSDYQHNPIQILGVFDVSIHYNGRNIDNLPVIVTKSGCSDLLGCN
FT                 WFDPLGISIKGIHSVGSDVQIAGILNKFEHLFSTELGCYTGPPVILNIDAT
FT                 VPPVRLPPRRIPYALKGLVEEELDRQCKQGILKPVEYSDWATPIVPVIKKD
FT                 GSIRICGDYKSTLNKAVKPHCHQIPAINTLLASXEGGSIFAKIDLAQAYQQ
FT                 LVVDENSSLLQTISTHKGAFKVTRLQFGISSAPGIFQSCIENVVQNISGVL
FT                 PYFDDIVIIGKTETELATRLQELFIRFDKAGLRLRKDKCQFGVPFVEFLGF
FT                 KIDSTGIRPCADKVSAIKDAPAPKDKKQLQAFLGLLNFYHSFLPHKATVAE
FT                 PLHRLLDKNATWRWDKQCEKAFSTLKELIGSDDVLVHYDGSLPLVLACDAS
FT                 PYGLGAVLSHKMPNGAEKPIAFYSRTLSKAERNYAQIDREAIALVAGVKKF
FT                 HNYVYGRTFTLITDHRPLLGIFTTSKAIPNIISNQMLRRSLFLSAYTFELV
FT                 HRSGLKMGNADFLSRCPLSAASDAVSTDDVLMIELAATPIISAEAIAAQTS
FT                 KDPLLAKVSNWVLRGWPDMKLEQSDIAYPYYCRREQLSTNKGVLIWGNRAV
FT                 VPPKSRATILAALHAAHPGIVKMKALARSYVWWPNIDAEIELIVKKCIPCQ
FT                 QNRNDHSEAPVHHWESAKRPWSRLHIDFAGPFQGKTFLLVVDSYSKWLEVA
FT                 VVSSTSTAATIKVLRQLFATHGLPDQLVSDNGTAFTSQQSKAFLHNNLIRH
FT                 IRSAPFHPATNGQAERMVQTTKNYLKKLSPSNNMDLSLARFLFNQHITPHA
FT                 TTNRSPAQLLLNRELKSYFDKLQPQEISNGAEPFINQSKCFDTGKSVWVRN
FT                 YAPGPKWIEAYISEQTGPVSYKVRLTDNRIIKRHYNQIRSRVEQTDVNISH
FT                 QAPSATDDNTEDPASSNHSRPESPIQDDPXSLHASPMLRRSARMRRPTQFY
FT                 ESSGC"
XX
SQ   Sequence 4111 BP; 1230 A; 908 C; 905 G; 1066 T; 2 other;
     ctggcgacga ggatgggatg ctaattatca tccgaaataa acttggaatt attgacgcaa        60
     aatatcaaaa aattgtcacg cacaaaagca tacatatacg tttacatata catgctgtgg       120
     tgaaattttg caaacgttta cacacacatt tgcatggcag agtcgcttgc tggtgaattt       180
     ggagagatta gtttggccgg cgtttttgag gaaaagaagg aagtaattga ttctacgagt       240
     gctaaatata ctcaacggaa cccaattatg acgacagttg gaagtttgga accgtttgat       300
     ttgggacagc caaataaatg gggctcatat ttggagcgat ttaaattgtt cctgcttgcc       360
     aatgatgtca aagacgaggg tcgcaaaaaa gcatctttcc tcacattggt cggagcacca       420
     gtctacgatc ttttgacatc attggcgttt ccaaaccagg tcagtacatt accgttagac       480
     caaattgaga agattctaac tgatcatctt tgtccacgtc catcggaaat cgcggcattt       540
     tatcattttc acaaacgtga tcaacatccg gatgagaccg tcggaaacta tctcgcagcc       600
     ctgcgggcat tggcagtggg ttgcaatttt ggagcagcgt tggacagaat gctgcgtgat       660
     cgttttgtat gcggcatgag ggatgaaagc ttacagagaa gttttcttgc agacactgaa       720
     ttgacagtgc agaaagtttt ggagagagca actactagtg aagctgcagc agcgagtgca       780
     aaggctatca gacagcctaa cgagactatc cacagcatca aatcacagcg ccctcaacaa       840
     ccatataaag gaaaaggaca acaatgtgcg ggttgtgccg gtccacacgg ccggcagcaa       900
     tgcccttatc gtgaagcaat atgtcacggc tgtggccgga agggccatct taagcgtgtc       960
     tgccggagta atgactcgtc gaacgatgtt catccagtaa agggcaaaaa ttcacgtggg      1020
     aaatcggtaa acctcatatc taatctggtg agcctgaaga aacgtatcac ggtacagatt      1080
     aatggaaaat cgtgtacttt tgaagtggat tctggatctg acgtaactat gatgacgttg      1140
     cggacttatg atcgtatctg gccaacaaac aagcctaagg tttacaacta cgatccgggg      1200
     tttagtgact accaacacaa cccaatccag atactaggag tttttgatgt atcaattcat      1260
     tacaacggtc gtaatattga taatctacca gtcatcgtca ctaaaagcgg ttgtagcgac      1320
     cttctgggtt gtaactggtt cgacccacta ggcatcagta tcaagggcat acattcagtg      1380
     ggcagtgacg tacagatcgc aggcattctg aataagttcg aacacttatt ctcaacagaa      1440
     cttggttgtt acactggtcc gccagtcata ttaaacattg atgctacagt gccaccagtg      1500
     cgactacctc cacgccgaat tccatatgct ctaaagggac tagtcgaaga ggagctggat      1560
     cgccaatgca agcaagggat tcttaaacct gtggagtatt cagattgggc cactcctatt      1620
     gtaccagtta tcaagaagga cggttcaatt cgtatttgcg gcgactataa atcaacttta      1680
     aacaaagcgg ttaagccgca ctgccatcaa ataccggcga tcaacacttt gctggcatct      1740
     atkgaaggtg gatcgatttt tgccaaaatt gatctggctc aagcttatca gcagttagta      1800
     gtcgacgaaa actcgtcttt gctgcaaaca atcagtacac ataagggtgc attcaaagtt      1860
     actcgattgc aattcggcat ttcatcagca ccaggcattt ttcaaagctg tattgagaat      1920
     gtggtacaga atatttccgg agtcttacca tattttgatg acattgtaat aattggaaaa      1980
     acggaaacgg aattggcaac tagattacag gaactgttta tacgttttga caaagccgga      2040
     ctgcgactac gcaaggacaa atgccaattc ggagtaccat tcgttgagtt tttaggtttc      2100
     aaaattgact caactggtat aagaccatgt gccgataaag tctcggcaat caaagacgca      2160
     ccagcaccta aggataaaaa gcagttgcag gctttcttag gactactaaa tttttatcac      2220
     tcatttttgc cacataaagc aacagtggca gaacccttac atcgtctttt ggataaaaat      2280
     gcaacttgga ggtgggacaa acagtgtgag aaggcttttt ctacacttaa ggaacttatt      2340
     gggtcagacg acgtactagt gcattatgat ggttcattgc cactagtgct agcttgtgat      2400
     gcgtcaccat atggactcgg tgcagtttta agtcacaaaa tgccgaatgg agcggagaaa      2460
     cccatcgctt tttactcccg taccttatcc aaagctgagc gaaattatgc tcagattgat      2520
     cgagaagcta ttgccttggt agcaggagta aagaagttcc acaactacgt ctacggtcgt      2580
     actttcacac taatcaccga tcatcgacct ctgttgggta tttttaccac atcgaaagca      2640
     atcccaaaca ttatttcaaa tcagatgcta cgtcgatctt tgttcctgtc agcatatact      2700
     ttcgagctag tacaccgctc cggattaaaa atgggcaatg cggattttct aagtcgttgt      2760
     ccactgtcag cagcatcgga cgctgttagc accgacgatg tgcttatgat cgaattagca      2820
     gcaacgccaa tcataagtgc tgaggcgatt gccgctcaaa catcgaagga ccccttattg      2880
     gcgaaagtat caaactgggt gttaagggga tggcctgaca tgaaattgga gcaatcagat      2940
     attgcatatc catactattg ccgtcgggaa cagctctcta caaataaagg agttttgatt      3000
     tggggaaatc gcgccgtagt tccaccgaaa tccagagcaa caattttagc tgctctacat      3060
     gccgctcatc caggcattgt aaaaatgaag gcgttagcgc gtagctatgt ttggtggcca      3120
     aacattgacg ctgagattga gcttattgtt aagaaatgta ttccatgcca gcagaatcgt      3180
     aacgatcatt cagaggcacc ggtgcatcat tgggagtcag ccaagcggcc gtggtcccgt      3240
     ctacacatcg attttgcagg accttttcaa ggaaaaacct ttcttctggt cgtggattct      3300
     tactcaaaat ggctagaggt tgcggttgtt agctccactt ctacagcggc tacaattaaa      3360
     gttctcaggc aactgtttgc tacgcatggg ttaccagatc agttagtgtc agacaatggc      3420
     acagcattta cctcccaaca atctaaggca ttcctccaca acaatctaat tcgacacatt      3480
     agatcagcac cgtttcaccc agcaacaaac ggccaagcag agcgcatggt gcagaccacc      3540
     aaaaactacc ttaaaaaact atctccgagc aataatatgg atctaagcct tgctcgattt      3600
     ttgtttaatc aacacataac tccacatgca acgacaaatc gctcgccagc tcagctattg      3660
     ttaaatcggg agttaaagtc ctactttgat aaactacagc cacaagaaat ttctaatgga      3720
     gcagagccat ttattaatca atcgaaatgt tttgatacag gcaaatccgt ttgggtacga      3780
     aactatgcac cgggtccaaa atggatagaa gcctacatat ccgagcaaac aggaccagtg      3840
     tcttacaaag ttcgtctgac agacaatcgc atcataaagc gtcattataa ccaaattcga      3900
     agccgagttg aacaaacaga tgtaaacata tcacatcagg caccatcagc aactgatgac      3960
     aacacggaag atcctgcttc cagtaaccac tctaggccag agagtcctat tcaagatgat      4020
     ccacastcat tgcatgcctc accgatgcta cgacgttctg ctcgcatgag acgacccact      4080
     caattctatg aatcatctgg gtgttaaggg g                                     4111
//
ID   Gypsy-24_DWil-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   scaffold_181148;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DWil_;
KW   Gypsy-24_DWil-I; Gypsy-24_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-168
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181148; Positions 4237137 4237304.
XX
SQ   Sequence 168 BP; 49 A; 39 C; 30 G; 50 T; 0 other;
     tgttgtgtat gcagccctat cgtacgtaag ccatctggca actctgctgg cttgacgcca        60
     tgaacagttc agccggtcgt tcgcagcaag cacacgcgtt ataaacttgc gatatatata       120
     tatgtaattt caatatcacc taatcaataa acattctaag atatttca                    168
//
ID   Gypsy-24_DY-I repbase;    DNA;    INV; 7085 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DY_;
KW   Gypsy-24_DY-LTR; Gypsy-24_DY-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7085
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1836-1836 (2012).
XX
RN   [3]
RP   1-7085
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   Positions [4923-5399] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           842..2131
FT                 /product="Gypsy-24_DY-I_1p"
FT                 /translation="MEEIKETLAKFNDTLNNLITAVNSVTEDNKKLSARLV
FT                 TLEGDFENRNPVGTQAVPLTRARNEYELRETSTLPDCVKELQIFEGQPETY
FT                 ISWINRAQSILNDYQVIKNKPLYRSIVLHVRHKIRXNADTALLAYGVEDDD
FT                 WEEIKRVLSLNYADKRDLRTLEHQLCQLNQGTQTLEKFYMAVNSQFSLILN
FT                 NLRNGNREPVVVSALIETYRDKALDVFMRGVSGDCSKWLLVRNPRTLPEAY
FT                 SFCLELQNVVSGAGTGPSQGNNRFAQHSQHYQPRFPGTYQGYNRPPIDSPY
FT                 VQSSQHGPRGTQSSPRWSRQPAAIKMESNRSGQSHQSGYSTPRNDSIGHKR
FT                 SSTGYANPFQKAQRLYHIEATPTLFAETEGRNGQYVPPSSYFEQGLNHEGT
FT                 GHQPNELDNGNSNVESEDVIRGGSNFMTNASPASHT"
FT   CDS           2725..5208
FT                 /product="Gypsy-24_DY-I_2p"
FT                 /translation="MVPKKPKPTGEKQYRLVIDFKRLNSVTISDTYPIPDI
FT                 NSTLASLGEAKYFTTLDLTSGFHQIHMKESDTPKTAFSTLNGKYEFLRLPF
FT                 GLKNAPSIFQRMIDDVLREHIGKICYVYIDDIIVFSKDYDSHWANLRLVFN
FT                 SLREAKLQVNLEKTKFLSTQVEFLGYLVTSEGIKADQKKVDAIMKMNPPTN
FT                 VKELKSFLGMTSYYRKFIRDYAKVAKPLTNITRGEFAKVKSNQSKRVPIEL
FT                 NEEALQAFSDLKAILSSSEVLAFPNFSKPFHLTTDASNYAIGAVLSQEEEG
FT                 RDRPIAFISRSLNKTEECYATNEKEMLAIVWALDNLRSYLYGAGCIRIYTD
FT                 HQPLTFALGNRNFNAKLKRWKSRIEEYNCTMVYKPGKSNLVADALSRIPTQ
FT                 INHLESDSATVHSALQDASHLVQHVQNPINVYRNQLIFDENATEYGCDQPH
FT                 AGYVRHTIPINSQTRIKLNTLLKEYLKPLIINGVKIPDDLLQDFQTCCSTN
FT                 FNGYKIRITQRLVSDLNDSEEICEVIEKEHRRAHRGPAEVRIQLLEKFYFP
FT                 RMASTIRAQVSACECCKTFKYDRHPNKPDLQPTPVPNYPCEILHIDVFALE
FT                 KKIYLSCIDKFTKFAKLFPLESKSAIHLRERLMEAIHYFTVPRVIVSDNEK
FT                 GLLCPTVLNYLRALQIELYYTPTQKSEVNGQVERFHSTFLEIYRCLKTEYP
FT                 TFKSTELVPITVDRYNNSVHSVTNRKPVDIFFDRTSRINYQGLSDFKRQTR
FT                 EDIRGLIEHKQALVISGRNKKRHRPLEYNEGEKVFIKNKQIKTKEKPKFKA
FT                 EVVQEDRTVTLRTKSGKIFHKSDVRK"
FT   CDS           5759..7051
FT                 /product="Gypsy-24_DY-I_3p"
FT                 /translation="MQQLLGELDDEAAGMTDGRMAALVTQYLKDASEGMRR
FT                 LSRVRTTRAIEWLGSAWKWVAGSPDATDWNTILKAQNEVVTNTDQQIRINS
FT                 KLFDSAHESALLINKVVQRVNAIDGDLQATALTLHRAIILANQVGEIIKAC
FT                 QFAKTGTVNSNLLDHEEVETILNEVSNLPYQNAIEAIEFSRPSVVTNGTMI
FT                 LYILAFPKVTTESYKFMHLYSTISEGRQVVLEHNKLAASPDETYAVLGDCL
FT                 SIGNTTVCQEKDLLKLRENDCIPRLLKGGHAACTYLRNDQEVVNLIDDGTL
FT                 LLTNFNGSVIFESKEHQLVGSFVVQYSNETVTVGNRTYTSYTSNHLMAMPA
FT                 VLTRVTATNYQLSLEYVHEASNQNLRRLSLMTGKLVYSSISEGIMALLILS
FT                 LIYFLWRKLTSTKGIPKIENASMGLEALPTPGTPKAL"
XX
SQ   Sequence 7085 BP; 2286 A; 1649 C; 1437 G; 1709 T; 4 other;
     ggcgcccgaa cagtcggcaa gcccggcttt accagtgtat gtgtgtgcag tgttctaaca        60
     aaacaaaagg aaacaaatta aaatgaaaaa cgaaacataa aaaagattga agattcggga       120
     gtgcaatata aaataataaa acaactaccc gctgcggtgg agatgcgcga caacatgcga       180
     aaaacatctt ccacgggcgc atacaagttg tagtgattcc gcgtaatgaa aaacgactac       240
     gcactgcggc ggtatagctt ttcgctgatt cgcgagtgtt aaaatgtcat ggttaaacac       300
     cattataaaa caataaatga aaaccgcggc ggcaatttat ttgcgagcgg ccccatttca       360
     taacataaca cttgatattc aagtataaag tggtgagtgg cagtctactg gaaaggctaa       420
     gactgcactg taaagttaac tatactaaac gatataacga taacatcgtc aaacataaga       480
     aagacttttt aagaagaaat tataaaaaat atgcaattta tgcgacctta ctaataactt       540
     ttcctttcat taacagatca attcaaacgt aagagtacaa gttcgaagaa caaacaagga       600
     aatcatatac aacggtgagt gaaaaacttt gccaacagat ttaataaaaa cgaaatagaa       660
     actcgagtat tgagaagctc atttagactc ttaaaataaa aaaaaccctt cgctacttcc       720
     ctgtttccaa acattggtga caacttgacc accgtttaaa taaaagtccc gcgctagttc       780
     ttacttatcc gggtttcacg tcctttttac cttttgtatc acctccctac gaacctatag       840
     aatggaagaa attaaagaaa ctctcgccaa attcaacgat acgttgaaca atttgatcac       900
     cgckgttaac tcagttacgg aagacaataa gaagttaagc gctaggttag ttaccctaga       960
     gggggatttc gagaacagga atcctgttgg tactcaggcg gtaccattaa ctagggcccg      1020
     caacgagtac gaattgaggg aaacttcaac cttacccgat tgcgtcaaag agttacaaat      1080
     attcgagggc caaccggaga cttatatttc gtggattaat agagcgcagt ccattctaaa      1140
     tgactatcaa gtcataaaaa ataagcctct gtataggtcc atcgttttac acgtcagaca      1200
     caagattagg sgtaatgccg acacggcgtt attagcttat ggcgtagagg acgacgattg      1260
     ggaagaaatc aaacgcgtcc tttccctcaa ctacgctgat aaaagggacc ttcgtaccct      1320
     ggaacaccaa ttatgtcaac twaatcaggg tacccagacc ctagaaaaat tctatatggc      1380
     agtaaatagc caattctctt tgattttgaa taacctgagg aatggcaata gagagcctgt      1440
     cgtcgtgagt gctcttatcg aaacttatag ggacaaggcg ctggacgtct tcatgagagg      1500
     cgtcagcggc gattgttcaa agtggttgtt ggtccgtaat ccaaggactt taccagaagc      1560
     ctattctttt tgccttgaat tacaaaatgt tgtttcaggg gccggcaccg gtccctcaca      1620
     ggggaataac agatttgcac aacattcgca acactatcag cctagattcc ccggcaccta      1680
     tcagggctac aatagacctc cgatagacag tccctacgtt caatcgagtc agcatggacc      1740
     cagaggtact cagtcttcac caagatggtc acgacaaccc gccgccataa aaatggagtc      1800
     taaccgatcg ggccaatcgc atcaatctgg atacagtacc cctcgcaatg attccatcgg      1860
     ccataaaaga tcatcaactg ggtacgctaa ccccttccaa aaagcacagc gactttatca      1920
     tatagaggca acgccaactc tattcgctga aacagaagga agaaacggcc aatacgttcc      1980
     tccatcttcc tattttgagc aaggtcttaa tcacgaggga accgggcatc aaccaaatga      2040
     attagacaac gggaactcaa atgtagagtc ggaagacgtt atccgagggg gttcgaattt      2100
     tatgacgaac gcctctccag cgtcccatac ctagagtatg gaaccaagga tggggctaag      2160
     ttacacttcc ttatagacac cggcgcgaat aagaacttca tcagtcccaa aaattccgcc      2220
     gggagtaccc ccattcctac ccccttccat gtccaatccg ctgctggtaa tgtgaaaatc      2280
     acacatcacc tagtaggcaa tttctttgaa ccaattggca ataacacccc aactaccttt      2340
     tttgttctcc ccggcttgca ttcctttgac ggaattatcg gggacgacac tttaaaggaa      2400
     attaaagctt tggttgatag gaagaacgac tgtcttattg tatccccggg tattaaaata      2460
     cctctcctcg cgaaaaaatc tctaaatgtc cattccctgt taggttgcga acatccagaa      2520
     gatataaaac gtacccttaa ctctctgtta agctcatact cgactctttg tgacccactt      2580
     tcaccaggcg aagcagtcca cacgagtgta agagccgaaa ttcgtactac cactgacgac      2640
     cctgtgtata ctaaaagtat ctcggaactt ttagctgatg gcataattcg accctcaaaa      2700
     agtccgtata attcccccat ttggatggtt cccaaaaaac cgaaaccaac cggggaaaag      2760
     caatatcgcc tcgtgataga ttttaaacgt ctgaattcag tgacaatatc agacacttat      2820
     cctattccgg atataaattc cactttagcc agcttgggtg aagctaaata cttcactaca      2880
     cttgacttaa cgtcaggatt tcaccagatt catatgaaag aatctgatac gccgaaaact      2940
     gcgttttcca ctttaaacgg gaaatacgaa ttcctgcgcc ttccttttgg gctgaagaat      3000
     gccccttcta tttttcaacg catgattgac gatgtgttaa gggaacacat tggtaagatt      3060
     tgctatgtct atatagacga catcatcgtc tttagcaaag attacgacag tcactgggcg      3120
     aacttgcgtc tagtctttaa cagtcttagg gaggcaaaac tccaggttaa cctagaaaaa      3180
     accaaattct tatcaactca agtcgaattt cttggttact tagttacttc agaaggtatt      3240
     aaggccgatc agaaaaaagt agacgcaata atgaaaatga atccccctac taatgtcaag      3300
     gaattaaaaa gcttccttgg catgacttcc tattaccgaa aatttatacg agattacgca      3360
     aaggtcgcga aaccgctcac taatattacg cgcggggagt tcgccaaggt taagtctaat      3420
     caatcaaaga gggtcccaat cgaattaaac gaagaggctt tacaggcctt ctccgatttg      3480
     aaagccattc tttcttcttc ggaagtttta gcgtttccta acttcagcaa accttttcat      3540
     cttacgacag atgcctccaa ttacgcaatt ggtgccgttc tktcacagga ggaagaaggg      3600
     agagatagac caatagcttt tatttcacga tcgctaaata aaactgaaga atgttatgcc      3660
     accaatgaaa aagagatgct cgcaatagtg tgggccctag acaatcttcg ttcttacctg      3720
     tacggcgctg gttgcatcag gatttacacc gaccatcaac cccttacatt tgcgttaggc      3780
     aaccggaact tcaatgcaaa attaaaacgc tggaagtccc ggattgagga atacaattgc      3840
     acaatggttt ataaaccagg gaaatcaaat ctggtcgcag acgcgctttc acgtatcccc      3900
     acacaaatta atcacttaga gtccgactct gcaacagtac acagcgctct tcaagacgct      3960
     tcacacctgg tacaacacgt ccagaaccca atcaacgttt acagaaatca gctgatcttc      4020
     gatgaaaacg cgaccgaata cggttgtgac caaccacatg ctggttatgt ccgccacaca      4080
     atccctatca actctcagac gagaattaaa ctcaatactc tcttgaagga atacctgaag      4140
     ccactaatta tcaatggggt taaaattccc gacgacctct tgcaggattt ccagacctgt      4200
     tgctccacta actttaatgg ttataaaatt cgtataacac aaaggttagt gtcggatttg      4260
     aatgacagcg aagaaatttg cgaggtcatc gagaaagaac accgccgggc ccacaggggc      4320
     ccagcggagg taagaattca actcctggaa aaattttact tcccacgaat ggccagtacc      4380
     atacgtgctc aagtgtctgc ttgcgaatgt tgtaaaacat tcaaatacga ccgccaccct      4440
     aacaaaccag atctgcagcc aacccccgtc ccgaactatc catgcgaaat actgcacatt      4500
     gatgtattcg ccctagagaa aaaaatttat ttgagctgta tcgataaatt tactaaattt      4560
     gctaaacttt tcccgctgga atctaaatcg gctatccatc tgcgagaaag gttgatggag      4620
     gccattcatt atttcactgt gcctagggtt atagtctctg ataatgaaaa aggtcttctc      4680
     tgtcctactg ttttgaatta ccttagagcc ctgcagatcg aactctacta tacgccaacc      4740
     cagaagagcg aggtgaacgg ccaggtggag agattccact ccacatttct agaaatctat      4800
     cgatgcctga aaaccgaata tcccaccttc aaaagcacag aattggtacc catcacagta      4860
     gatcggtaca acaattccgt gcactcggta acaaatagga aaccggtgga tattttcttc      4920
     gatcgtactt cccgaattaa ttatcagggt ttgtcagatt tcaaacgaca gaccagggag      4980
     gatataaggg gccttattga acataaacaa gccttggtca ttagcggccg taataagaaa      5040
     aggcatcgac ccctcgagta taacgaaggt gagaaagtct ttatcaagaa caaacagatt      5100
     aagacaaagg aaaagccgaa gttcaaggcc gaggtggtcc aggaggatag gacggtgaca      5160
     cttaggacga aatccggaaa gattttccac aagtcagatg ttaggaagta gcgaggagaa      5220
     gccttcaatc ttcttccttc tatctcacta ttcctaataa aaagaatgaa aattggcaaa      5280
     gatttttcac ccacttaaga ccataaaaaa ctacgaataa caaaaaaaat ataaaaataa      5340
     aaaaaaaaaa ctaatcactt aaataataat aagcaagaaa aaatattaca aaacaaaaca      5400
     caaagacacg aaattctgca aaaaggaaca aagaaacaca caccacacaa aatgcttaaa      5460
     taaaaaaaaa cacaacacaa acaacaccaa ataacatgat tacgaaacac aaaaaacact      5520
     tagaatatcg ttacagacat taggatataa gcacacgaaa cacacttctt gtaacagcat      5580
     aataccactt aagtaacctt tcttttcctt cccttatgat ataagccttt tgctagctca      5640
     tgtcgtttgt accttccaca taattaagta cgactcccca gtagtccctt tacaacaggg      5700
     gacaatttgg cgaataaacg gtgtctttaa actggcacac attatcgacc tgggcagaat      5760
     gcagcagctt ctcggtgaac tagacgatga ggcggccgga atgacggatg gacgaatggc      5820
     cgctctagta acacagtact taaaagatgc gtcagaggga atgcgtcgac tatcgagggt      5880
     acgcacaaca cgggctatag aatggctagg atccgcctgg aaatgggtcg ccgggtctcc      5940
     agacgcgaca gactggaaca ctatattgaa agcccaaaac gaggttgtga cgaatacgga      6000
     tcagcagatt cgaatcaact cgaagctctt cgactcagcg catgaatcag cgctgctgat      6060
     caataaggtg gtccaaagag tcaacgcgat cgacggagac ttgcaggcca cagcattaac      6120
     cctgcacaga gccattatac tggctaatca agtcggcgaa attatcaagg cgtgtcagtt      6180
     tgctaaaacg gggacggtca actcgaacct cctggaccat gaggaggtgg agacaatcct      6240
     gaacgaagtc agtaacctcc cttatcagaa cgcgatagag gccatcgagt tctctcgtcc      6300
     gtcggtagtg acgaatggta caatgatatt gtacattctg gcgttcccga aagttacgac      6360
     agaatcatac aagttcatgc acctgtactc gaccatctcc gagggaaggc aggtggtact      6420
     ggaacataac aagttagccg cgagtcccga tgagacctat gcagtacttg gggattgcct      6480
     atctatcggc aacacgaccg tttgccagga aaaggacctc ctcaaactaa gagaaaacga      6540
     ctgcatccct cgattactga agggcggaca cgccgcctgt acatacttga gaaacgacca      6600
     agaggtggtt aatcttatcg acgatggaac acttctattg accaatttca atggctcagt      6660
     aatcttcgag tcaaaggaac atcaactcgt cggttctttt gtggtacaat actcgaatga      6720
     aacagttacg gtcggtaatc ggacctacac gagctatacc tccaaccatc taatggcaat      6780
     gccggcggtc ctaacccgag tgacagccac caattaccaa ctgtcactgg aatacgtaca      6840
     cgaagcgagt aaccagaacc ttcgaaggtt gtctctgatg acgggcaagc tggtttactc      6900
     ctcaatctcg gaaggaatta tggcactgct catcctctca cttatatact tcttatggag      6960
     gaagttaact tcgaccaaag gaatcccgaa gatcgagaac gcgtcaatgg gcctggaggc      7020
     tctccccacc cccgggacgc ctaaggctct ctgatctgtg ggacacagat cttgtgatgg      7080
     ggagg                                                                  7085
//
ID   Gypsy-24_DY-LTR repbase;    DNA;    INV; 601 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DY_;
KW   Gypsy-24_DY-LTR; Gypsy-24_DY-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-601
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1837-1837 (2012).
XX
RN   [3]
RP   1-601
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 601 BP; 161 A; 162 C; 159 G; 119 T; 0 other;
     agttaacgac ttgctctcgc ccggagccaa tgacccgttc tggctaaagt aaacaacctg        60
     ccttagccga gccccgcaga cgcccctcac ccttgcgatt aacatgatcg caaccgcagc       120
     acaaccaacg gaagcggcaa cgggagcgca gtgccagcga tcatatgctg cgtaagcgtt       180
     tccacgccgg cacatcgacg gcgagttcgt gcaacgtaaa cgttctcacg cagaaatgca       240
     atgcgagcgc tcttgcgaaa gcgctccgac gaccggcata gcgcgtgtgc agcgtaagca       300
     cctttacgcc agcaccggcg gttacccagg tgggttggcc gctcgatggg ggcagacccg       360
     atttggcaac gacagcgagc agaagtggaa ctccaagatc cagaacctca ataaaccaga       420
     ttgtaataat tgacgaatga acttgtgttg tgtttgggaa gggataacgg cctaggttcc       480
     cctgcatctt ggatacgagc ttgcttccta cataatcaaa ggacgagaat aatatggaac       540
     tttgctacag gtaaaagtat atagtcaact atgactgcca gtaaggaggc tggcgttaac       600
     t                                                                       601
//
ID   Gypsy-24_DYa-I repbase;    DNA;    INV; 5304 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DYa_;
KW   Gypsy-24_DYa-LTR; Gypsy-24_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5304
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 1710631 1705328.
XX
CC   Positions [4388-4849] - Integrase core
CC   'CTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1757..4849
FT                 /product="Gypsy-24_DYa-I_1p"
FT                 /translation="MLRLRQQMQRCAFGSSKAEIENICLKDKIIDVWAPLD
FT                 LKKRLLGKEYSLEEVIEACQVEEQINKESKEMTSRPIAEPICKITHRGFNQ
FT                 SGECPRCGKFGHTNNDPSCPARNVTCNKCSKSGHFARKCRTNLNGRFLKSQ
FT                 RNNLKWPCTYIRSVEEEATSSKLKKGEEHCFKVSSEDEEEFIRCRVGGREI
FT                 SLIIDSVCKFNLISHADWSLLVKRKATVFNVRTHTEKQFRAYASNKLLRVM
FT                 YIFEAPISVEPGTEEIASFYVIENGEQSLLGRDTAIELKVLRLGRNINRIE
FT                 EMEPFPKWKNIEVSLSIDYDVKPVQQPVRRIPAALEDKVMERLDEALSRDI
FT                 IEPVTGPSAWISPIVLAFKENGDIRLCVDMRLANKAILGENYPLPTFDCFM
FT                 TRLKEAKFFARLDLKDAYHQLALDESSREITTFITPRGLFRYKRLMFGVNS
FT                 APEIFQRLLEQMLSAVPNAMNFIDDVIIFGATDLEIDSAVKEVCQIFQENN
FT                 VLLNKEKCIWKTSKLKFLGHILSDKGIEVYPEKIDVIRSFRDPKNKEETRS
FT                 FLGLVTYVGKFTPDLASHTDPLRKLLKTESKFTWGEAEKNAFSNLKNLLYK
FT                 VPKLSYFNPRHRTRVIADASPVALGAVLLQSKVDNEPLIITFASKVLSEVE
FT                 KRYSQTEKESLALVWAVEKFYYYLAGLHFELVTDHKPLEAIFKPTSKPPAR
FT                 IERWLLRLQAYTFTVIYKSGRDNISDALSRLCQLPAVEPIDHKTEYSILRV
FT                 AQSSIPRSMTIHEIAESSKRDEEIMDAISCLENDSWKPDSSVGFYPFRYEL
FT                 SAVGSLLLRGNRLVVPTSLRVKILELAHEGHPGETAMKRRLRSKVWWPQID
FT                 RDAEKFVKACRDCCLVSQDIRPPPFPTGPWIWVASDLLGPLPNNEYVLVFI
FT                 DYFSRYMEHKFLKTISSTTLVEAMKEIFCRLGYPEHLRTDNGRQYVSEEFS
FT                 NYCKACGIKQVRTPPNWPQANGEVENMNRALVKRLKIAYANGKNYKEELQK
FT                 FVLMYNVTPHGTTSAHKADVQQSHP"
XX
SQ   Sequence 5304 BP; 1800 A; 1103 C; 1209 G; 1192 T; 0 other;
     ttggcgacga gtggaaaaat cggtaaatga taatgataat aactaaaact ttggtaaatt        60
     cgatgcatta ggaaaaaggc gcgaaattaa ggtaaacgag tggtgtgata taggctgtgc       120
     gtgagtgtgt gtgtgttgga acgtgcctac cggcatatac atacataaaa atgtggaaaa       180
     agaggagaga aggaataagc tgcgtgagtg cagattgcac gttgccaaca taagatgacg       240
     ttaagcacaa agcggaatga gtaattttat atgcacaatt tttcgctcac tctcatccaa       300
     cacacatgca ctccgacaga taggctgagt gaagagatta ctcttcgcaa gcttaagaga       360
     aagtgagtta gagagacact ctctagcaac caggatataa gaaaaataac caataagaat       420
     aatactcttt acaagcttaa aaggtgagct ggagagaaat ttctctagca accaaagagt       480
     tgcaaatgat aatgataata actaaaactt tggtaaattc gatgaattag gaaaaaggcg       540
     cgaaattaag gtaaacgagt ggcgtgatat aggctgtgcg tgattgtgtg tgtgttggaa       600
     cgtgcctacc ggcatataca tacataaaaa tgtggaaaaa gaggagagaa ggaataagct       660
     gcgtgagtgc agattgcacg ttgccaacat aagatgacgt taagcacaaa gcggaatgag       720
     taattttata tgcacaattt ttcgctcact ctcatccaac acacatgcac tccgacagat       780
     aggctaagtg aagagattac tcttcgcaag cttaagagaa agtgagttag agagacactc       840
     tctagcaacc aggatataag aaaaataacc aataagaata atactcttta caagcttaaa       900
     aggtgagctg gagagaaatt tctctagcaa ccaaagagtt gcaagggccg agtacgcatt       960
     ataagctcta agagaggagc cgagtagtgg tacaagccaa aacatatttt gaaaaaaaag      1020
     aaaagaaaca gaacacgaaa tatataaata aataaatatt ttaataatta aaaaaaaatt      1080
     taatttaaaa aaaaataaaa acggaggaaa aaggaaaaat attacaagct tttaagaaag      1140
     agctgggtaa tcggtttgag ttgcaaacaa aaaggttaaa ggtcgggtgg agcagtattc      1200
     tctccacaag ccaaaagaat tcataaaatt taaaaggaaa aacggaaaca acaaaacccc      1260
     aaatgtaaat gggaggtatt attgaactga ggctgagtaa taattacaag ctcctaagag      1320
     agccgggtat taattacaaa tcaagtcgta aatctaataa tgtctttcgt cgtaaactcc      1380
     aattctaggt cccgtattga aaatgaccga cagtgtcatt aaaccgtttc tgtgcaaggt      1440
     gatcgacaag gcaatcctcc gaaatgaatg ggagaagtag ttgagggcat ttacaatata      1500
     cctcgaggcc gagggtattg atacctagaa gcagaagagg agtaagctac tgcttttggg      1560
     aggagtccag ctacagtcag tagtatactc tctacctggt gcgctggtgg agcccagcga      1620
     cggaaataaa gaagacatct ataaaatcct catcgaccat ttaaataaac acttctcacc      1680
     gaagcagaac tcaacgtttg aaagacatct attcagaggc ctgacaccgt tggacacaga      1740
     aagctttggt gatttcatgc tgcgactccg ccaacaaatg caacgatgtg cattcggatc      1800
     ctcaaaagcg gagattgaga atatatgtct aaaggataaa atcatagatg tgtgggcacc      1860
     tctagacctc aagaaaagac ttctgggaaa ggagtattca ctagaggaag tgatcgaagc      1920
     atgtcaggtt gaggagcaga tcaacaagga atcaaaagaa atgacatcaa gaccaattgc      1980
     ggaacccatc tgtaaaatta cacatcgtgg ttttaatcag agtggggagt gccccagatg      2040
     tggaaaattc ggacacacaa acaacgaccc atcatgtccg gcaagaaatg tgacttgcaa      2100
     taaatgctcg aagtctggac actttgccag gaagtgccga actaacttga acggccgatt      2160
     ccttaagtcg caaaggaata acctgaaatg gccttgcacg tatattcgct ctgtcgaaga      2220
     ggaggccacc agctccaaac tcaaaaaggg cgaggaacat tgctttaaag tgtcaagcga      2280
     agatgaagag gagttcatac gatgccgagt gggaggccgt gaaatttctt tgattattga      2340
     ctcggtgtgc aagtttaacc ttatcagcca cgcggactgg tctctgctag tgaagagaaa      2400
     agccacagtc tttaacgtaa gaactcatac agaaaagcag ttccgagcct atgcctctaa      2460
     taaattacta cgagtaatgt atattttcga ggccccaatt tccgttgagc cgggtaccga      2520
     agagattgcc tcattttacg tgattgaaaa tggagaacaa tctctgctgg gccgagacac      2580
     ggctatagaa ttaaaagtcc tccgactggg aagaaacatt aaccgtattg aggaaatgga      2640
     gccttttcca aaatggaaaa acattgaagt aagcctttcc atagattatg atgtgaaacc      2700
     cgttcaacaa ccagtgagac gaatcccggc agcgctcgag gacaaagtta tggaaagact      2760
     ggatgaagcc ctgagtcgag atataattga accagtcacg ggcccgagtg cttggatatc      2820
     tcccatcgtg cttgcgttta aggagaacgg ggacatccgc ttatgtgtcg acatgcgact      2880
     ggcaaacaaa gcaatcctag gggaaaacta cccattacca actttcgact gctttatgac      2940
     cagactcaaa gaggctaaat tcttcgcacg cctagacctc aaggacgcct atcaccaact      3000
     ggcccttgat gaatcgagcc gggaaataac aacgttcata actccaaggg gacttttccg      3060
     ctataagcgt ttgatgtttg gagtaaattc tgctcccgaa atttttcaac gccttctcga      3120
     gcagatgcta tctgcggtac ctaacgccat gaacttcatc gatgatgtca tcatctttgg      3180
     cgcaactgac ctcgaaatcg acagcgccgt aaaagaagta tgccagatct tccaggaaaa      3240
     taatgtccta ctgaataaag aaaagtgcat ctggaagaca agcaaactaa aattcctcgg      3300
     acatatttta tccgacaagg gaatagaagt ctaccctgag aaaattgacg tcatccgatc      3360
     tttcagagac ccaaagaaca aagaagaaac gcggagcttc ctcggtttgg tgacctacgt      3420
     cgggaagttc actccggacc ttgcaagtca tacagatcct ctaagaaaac tgctgaaaac      3480
     tgaaagcaaa ttcacctggg gcgaagccga gaaaaatgct ttcagcaacc taaagaatct      3540
     cctatacaag gtacccaaat tatcatattt caatccaagg catcgaacac gggtgattgc      3600
     ggacgccagc ccggttgccc ttggggctgt gttattgcaa tcaaaagtcg acaacgaacc      3660
     tttaataatt acctttgcta gcaaggtcct gtcggaggtg gagaaacgct actcccaaac      3720
     tgaaaaagag agcctagcgc tggtttgggc agtggagaaa ttttactact atctggcagg      3780
     cctgcacttc gaactcgtaa ctgatcacaa gcccttggaa gccattttca aaccaacatc      3840
     caagccccca gctcgcattg aaaggtggct gctgcggctt caggcatata cgttcaccgt      3900
     tatctataaa tccggaagag acaacatatc agatgcgttg tctcgactct gtcaactacc      3960
     ggcggtagaa ccaatcgacc acaagacgga atacagcatc cttcgcgtcg cacagagctc      4020
     tatcccaaga tctatgacaa ttcatgaaat agcagagtct tccaagaggg atgaagagat      4080
     tatggatgca atcagttgcc tggagaacga ctcctggaag cccgatagtt cagtgggctt      4140
     ctacccgttt cggtatgagc tttcagcggt tggctcgctc cttttgaggg gaaaccgcct      4200
     agtcgtgcca acatctctga gagtaaaaat actggagtta gcccacgaag gacatcccgg      4260
     cgagacagca atgaaacgcc gcctgcgatc caaagtatgg tggccacaaa tagacagaga      4320
     cgcagaaaag tttgtcaaag cttgcagaga ttgttgcctg gtatcacaag acatcaggcc      4380
     accccctttt cccactggcc cttggatttg ggtagcgtcg gatttactag gtccgcttcc      4440
     caacaatgaa tatgttctag tcttcattga ctatttctca cgatatatgg agcataagtt      4500
     tcttaaaacc atatcttcaa cgaccctggt agaggcaatg aaagagatct tctgtagact      4560
     gggatatcct gagcacctac gaacggataa tggacgccaa tatgttagcg aggagttttc      4620
     taactactgc aaagcgtgcg gcattaaaca agttcgaacc ccaccgaatt ggccgcaagc      4680
     aaacggggaa gttgaaaaca tgaacagagc ccttgtaaaa cgcttaaaaa tagcatacgc      4740
     aaatgggaaa aactacaaag aggaactcca aaaattcgtt ctaatgtaca acgtaacccc      4800
     acatggaaca acatcagccc acaaagctga tgttcaacag agtcatccgt gacaaaatac      4860
     cgggcattgg ggatatctgc gagaatacct tagactctgg agagagagat aaagatatta      4920
     ttgaaaaaaa taagaaaagc aggcagccga caaaagaaga ggggcaaagg aagtcgatat      4980
     agaagtgggc gacaaggtgc ttttgaaaaa cgtagtgttc ccaaacaaac ttcgacaaga      5040
     cggaatttac ggttttagaa cgacacaata atattgtggt gatcgaaggg ggtggtagaa      5100
     aactaacaag aaatgcctca catcttaaga aagttccagc tagccaaacg tatccagcat      5160
     cctgcccaac gccgcaacca gatgacagct taccggaatc aacacctact tcggagaacg      5220
     cagtactcca gcccacagaa ggaagccccg ggatccagcc acccctgccg ccattaaagc      5280
     taaaactcga taataaagga ggga                                             5304
//
ID   Gypsy-24_DYa-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   chr2L_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_DYa_;
KW   Gypsy-24_DYa-I; Gypsy-24_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2L_random; Positions 1705327 1705114.
XX
SQ   Sequence 214 BP; 66 A; 47 C; 56 G; 45 T; 0 other;
     tgtggcgacc ggcgttgcca acaaccaagc atcgggagag cagcgacggg agagacacta        60
     ccgatcgcct agtgtctgag tgagagaatg gattactcct gagcgtactg ccaagcagcg       120
     tggatgtgcg aataccatag atctgaataa acgaactgaa tatatataac cataaatcat       180
     aacgcgtgtt actcttagta agcgggtcat taca                                   214
//
ID   Gypsy-24_HeAr-I repbase;    DNA;    INV; 4298 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4298
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5572-5572 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..1161
FT                 /product="Gypsy-24_HeAr-I_1p"
FT                 /translation="MSRLQFEVELAADEDPKNNIIIIKSITTEDEITYLIP
FT                 PCFQAAKHHHQLTKLPEFMKIKKTLQRRGNNRKVWIKLPSDILALYKDETG
FT                 NILFNDYLLQETTKATSQPTMDKKLLEILEKLSEQSEKPTINKEKHNNLSK
FT                 LTEKFVLKKFDNKITNAKQWLQSFESECTRFDLTGDTEKISALRLFMNDSE
FT                 SDWYESMLIKHSLNSQWKIWQVSFLDTFAAKSWSSVIYALTYKHFNGSLLE
FT                 YALKKQRLLLEYNSDIDNRTLTDLIAAGLPPYIRSKLDRQEMTNPTLLFSA
FT                 LRMHENQNKNVQKSFTERKSSTKPELEFKKKTPCQICYKIGKKNRFHTEDL
FT                 CWFKENKNSNDSVKHCKNLMLEIDQFEDTKN"
FT   CDS           1140..4262
FT                 /product="Gypsy-24_HeAr-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="SIRGYKKLNIPPLIEVEVILNDTLKCTGIYDPGSNIT
FT                 LINSKLIKVKNSKINYFENKFNTIGGGGKTTGLIKLNGKILNIEEEINAFI
FT                 CNDKSFTHELLLGLDTIKRFGLTHDGNLNIQLQKNYNPSVNEYMRPTEEKK
FT                 HNIHETVTRELKSERVSYEINFNEGIDVNRFDIDVAYLEDDQRRKICALLD
FT                 SYKHIFAKDKYDVGRVKNYEAFIDLQVEQYCSKRPYRCSLDDKEEIEKQIG
FT                 KLLKNELIEESYSPFAAPVTLAYKRDEGKKSRLCIDFRELNKIVVPQPQPF
FT                 PLIDDLMVKTINCKYFTTLDINSAFWSIPLRISDREKTGFVTQEGHYQWTC
FT                 LPFGLKTSPAIFQRILTNIIRKHNLSNFVMNYIDDIMVFSKTFDEHVEHLS
FT                 KLLDAIAEEGFRLKLTKCKFAAQSVRFLGHIVKGNTITPLKDNLKSIAEFT
FT                 APQNKKQIRQFLGKVNFYNKYIPNAAITLDPIHNLLRKNIKYDWSADCEDA
FT                 FQTIKKYLCSTPILAIFDREAPTFIYTDASIKGIGAILKQTQKNGEIKPVA
FT                 YFSKKLNASQKKKKAIFLECLAIKESLKFWQHWLIGNSFTVYTDHKPLENL
FT                 NIKNRTDDELGDMTHYLSQYNFTIKYNPGRNNTEADCLSRNPVYESHENED
FT                 DNLKTVNIVKIEEILDDQKKNSVIKNKQNFIIENGIYYKQNNKKKKIVLSE
FT                 DYSKILIKKVHEHFCHIGINQMESKLRSLYTAPNLLDNIKLICRQCEICIK
FT                 NKTRLNRKYGLMSQLGPAEKPFQIMSIDTIGGFGGNRSSKRYLHLLIDHFT
FT                 RYAYISCSKTQLAKDYIKLMEQVTKDNEVEILLSDQYPALNSKEFKKYLKD
FT                 HSVELILTAVDAPFSNGRNERLNQTLVNKIRCALNSKEKRTAWTTIAIDCV
FT                 KAYNSTNHSVTGYSPLYLLNGEPTDLLPIELKKTQMEPEELEKDRKIAFLR
FT                 SKKSHEMNKAIFDQNRIDYKFQKGDMVYVMDCNKLNRSKMDEIRIGPFEIE
FT                 EMISDSLCRINTGKNKKSLGLYHVTKLIPKFDYSN"
XX
SQ   Sequence 4298 BP; 1757 A; 665 C; 755 G; 1121 T; 0 other;
     aatcgacaat tgtcagagtt gattggataa aagtagatca tgtcgagatt gcaatttgag        60
     gttgagttgg cagcggatga agatccgaag aataatatca taatcataaa atcgataaca       120
     accgaggatg aaattacata tctcataccg ccatgtttcc aagcagcaaa acaccaccat       180
     caactgacaa agttaccaga atttatgaaa ataaagaaga cactacagag aagaggtaat       240
     aatagaaagg tgtggataaa gctgccaagt gatattttag ccctctacaa agatgaaact       300
     ggaaatattt tgtttaatga ttatttatta caagaaacaa ccaaagccac aagccaacct       360
     actatggata aaaaattgtt agaaatatta gagaaactaa gtgaacaaag tgaaaaaccc       420
     actatcaata aagaaaaaca taacaattta agcaaattaa ctgaaaaatt tgttttgaag       480
     aagtttgata ataagatcac caacgctaaa caatggttgc aaagttttga gagtgaatgt       540
     acaagattcg atttaactgg tgatacagaa aaaattagtg ccttgagatt gtttatgaac       600
     gactcggaaa gtgactggta tgagtcaatg ttaattaagc atagtttgaa ctcacagtgg       660
     aaaatatggc aagtaagttt tttggacaca tttgctgcta aaagttggtc ctctgtaata       720
     tatgcattga cttacaaaca tttcaatggc tctctactgg aatatgcatt gaaaaaacag       780
     agattgcttt tagagtacaa tagtgatatt gataacagaa ctctcactga cttaattgcc       840
     gcaggattgc caccttatat tagaagcaaa ctagatagac aagagatgac aaaccctact       900
     cttctgttta gtgccctacg tatgcatgaa aatcaaaata aaaatgtaca aaaaagtttt       960
     actgaaagaa aaagttcaac taaaccagaa ctagaattta aaaagaaaac accatgtcaa      1020
     atatgttaca agattggaaa gaaaaacaga tttcacacgg aagacttgtg ctggttcaaa      1080
     gaaaacaaga acagtaatga tagtgtaaaa cactgtaaaa atctgatgtt ggagattgat      1140
     caattcgagg atacaaaaaa ctaaatattc ccccactaat agaagttgag gttatactga      1200
     atgacacctt gaaatgcact ggtatttatg accccggctc aaatataacc ttaataaatt      1260
     ccaaattaat aaaagtaaaa aattcaaaga taaattactt tgaaaataaa ttcaatacaa      1320
     ttggtggtgg gggaaaaaca acaggtttaa tcaaattaaa tggaaaaata ctaaatattg      1380
     aagaggaaat aaatgcattt atttgcaatg ataaaagttt cactcatgag ttgcttttgg      1440
     gactggatac aataaagagg tttgggttga cccatgacgg gaacttaaac atccaacttc      1500
     aaaaaaatta caacccaagt gtaaatgaat atatgaggcc cactgaagaa aaaaaacata      1560
     acattcatga aactgtaacc agagagttaa aatcagaaag agtgagttat gaaataaatt      1620
     ttaatgaggg cattgatgtg aatcgatttg atatagacgt tgcctacttg gaagacgacc      1680
     agaggagaaa aatttgtgca ttattagaca gttataaaca tatattcgca aaagataaat      1740
     atgatgtcgg cagagtgaaa aattatgaag cattcataga tttacaagtg gaacaatatt      1800
     gctcaaaaag gccatataga tgctcattag atgataaaga agaaatcgag aaacaaattg      1860
     gcaaattgct aaagaatgaa ttgattgaag agtcttatag cccattcgca gcaccagtga      1920
     cattggcata taaacgggat gaagggaaaa agtcaagact atgcatcgac ttcagagaac      1980
     tcaataaaat tgttgtacca cagccacagc catttcctct gatagatgat ctgatggtaa      2040
     aaacgataaa ctgtaagtat tttactactc tcgatattaa ctctgcattt tggtctatac      2100
     cattgagaat cagcgacaga gagaagacag gttttgttac acaggaaggt cattatcaat      2160
     ggacgtgcct tccttttgga ctaaaaacat ctccagctat tttccaaaga attttgacaa      2220
     atataataag aaaacataac ctgtccaatt ttgtaatgaa ttatatcgat gatataatgg      2280
     tattctcgaa aacttttgat gaacatgttg aacatttatc aaaattactg gatgcaattg      2340
     ctgaagaagg attccgtctg aaattaacaa aatgtaaatt tgcagcacag tcagtaagat      2400
     tcctgggaca tatagtaaaa ggtaatacaa tcacacctct gaaagacaac cttaaatcga      2460
     tagcagaatt tacagcacca caaaacaaaa aacaaatacg acaatttcta ggtaaagtaa      2520
     atttttataa taaatatatt cctaatgcag caataactct tgatccaata cataatttac      2580
     ttagaaaaaa catcaaatat gattggtcgg ctgactgtga agatgctttc caaacaataa      2640
     aaaaatattt atgctcaaca ccaattttgg caattttcga cagggaggcg cccactttta      2700
     tttacaccga tgcaagtata aaaggaattg gtgcaatatt aaaacaaaca cagaaaaatg      2760
     gagaaatcaa accagttgca tacttctcga aaaaattaaa cgcatctcaa aagaagaaga      2820
     aagccatatt tttagaatgc ttagccataa aagaaagttt aaaattttgg caacactggc      2880
     taataggaaa ctcatttaca gtttatacag accacaagcc cctagaaaat ctgaacataa      2940
     agaatagaac agatgatgaa cttggagaca tgactcatta cctatcacaa tacaacttta      3000
     caataaaata taacccaggc agaaacaata cagaagcaga ctgcttaagc agaaatccag      3060
     tgtatgaaag ccacgaaaac gaggatgaca acttgaaaac agtaaatatt gtaaagatag      3120
     aagaaatatt agatgaccag aaaaaaaatt cagttataaa gaataaacaa aattttatta      3180
     tagagaatgg tatatattac aagcaaaaca ataagaagaa gaaaattgtt ttgtcagaag      3240
     actacagcaa gatactgata aaaaaggtgc atgaacattt ctgtcatata ggaataaatc      3300
     agatggagtc aaaattaaga tctttgtaca cagcccccaa tctgttggat aatattaaac      3360
     taatttgccg gcaatgtgaa atttgtatta agaataaaac acgtttgaat agaaagtatg      3420
     gactaatgtc acaattggga ccagcagaaa aacctttcca aattatgtct atagacacaa      3480
     taggaggatt tggtggcaac aggtcttcaa aaaggtatct acatttgttg atagaccatt      3540
     tcacacgtta tgcttacatt tcatgctcga agacacaact ggctaaggac tatataaaac      3600
     tgatggagca agtgaccaag gacaatgaag tggaaatatt gctttcagat caatacccag      3660
     cactgaattc aaaagaattc aaaaaatatt taaaggatca ctccgttgaa ttaattttaa      3720
     cagcggtgga tgcccctttc tccaatggtc gtaacgaaag attgaaccag acgctggtca      3780
     ataaaattag atgtgctttg aacagcaaag aaaaaagaac tgcgtggaca accatagcaa      3840
     tcgattgtgt gaaagcctac aactcaacaa accactcagt aacaggttat tcacccttat      3900
     atctgttaaa cggagaacca accgacttac taccaataga actaaaaaag acacaaatgg      3960
     aacctgaaga actagaaaaa gaccgaaaaa tagcatttct cagatcaaag aaatcacatg      4020
     agatgaacaa ggcaattttt gaccaaaata gaatagatta caaatttcaa aaaggtgata      4080
     tggtttatgt aatggactgt aataagttga acagatcaaa aatggatgaa attagaatag      4140
     gtccatttga aatagaagaa atgatatcgg attcgctatg caggattaac actggaaaga      4200
     ataaaaagtc cttaggactt taccatgtaa caaagctcat tcctaagttt gattactcaa      4260
     attaaccata agttaatttt caattttagg gggggaga                              4298
//
ID   Gypsy-24_HeAr-LTR repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-455
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5602-5602 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 455 BP; 154 A; 61 C; 80 G; 160 T; 0 other;
     tgtaagcttt gtttactgta tgttgtgtat acagcctagt attaacttta ttatccatgt        60
     gtacgtcgcc taaaagtatg acactgcgta taacaggaca gcacactcaa gggagagcga       120
     gagagaaggc ggttacaaaa cgtcaagttg cgagggaatt gttagcctgc tcattacaat       180
     tataatagta ttcttataaa gactagattt aaagtaaata ataaagaaaa tagaagaagt       240
     aaacttaatt gaagtgatac agtgtgatct actaatatac tggatgtaaa aaccttaatt       300
     gtcgattttt ctattttagg ttagtatgta catcgtgcgt ttaaacacgt gttttttcat       360
     ttgattgtaa tatttaagtg atactaacat taaacatttc tattttagat aaatcaaaat       420
     tgtgtttttt ctcctgtatc gtccaacata ttata                                  455
//
ID   Gypsy-24_LH-I repbase;    DNA;    INV; 4567 BP.
XX
AC   ADOQ01005425;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_LH_;
KW   Gypsy-24_LH-LTR; Gypsy-24_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4567
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005425; Positions     968    5534.
XX
CC   Positions [2058-2600] - Reverse transcriptase
CC   Positions [3636-4112] - Integrase core
CC   'TAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..4520
FT                 /product="Gypsy-24_LH-I_1p"
FT                 /translation="MFDSNVLTVAKLREKLKVRGLPMAGSKAELITRLMDA
FT                 DPAGAWMAEEQEHGGDDEDAYIDQAQITAAEKFKEPPVIPAAEAGSSTTGV
FT                 TPIQEENDIERRDNALRRREVEFYKREKEVAERELELARREIAILREQRRN
FT                 PETAVVPDARGVAVFHEQPRVSLTMMGDLLSDFDGVSSDFSTWERQLRFVK
FT                 MTYRLDDCVKILMGMKLKKKAFEWFHSRPEHISMSFETILEKLRAMFERYE
FT                 SKLTIRKKFEDRAWRKEESFHEYLHDKTIMGNRVPVDKDELLEHIIDGIPD
FT                 DTLRDQARMQEFPSADALLRAFSRITLRNRNVTGLDRRDGRGVGPGERRER
FT                 IVGSGEWSGGGSGDGRRGTPGAERCFNCGARDHVSANCPTKSLGLKCFECG
FT                 KNGHIALKCPKKNGEPKKTVVAAVSQIERKKYTKDVIMGDRVITALIDTGS
FT                 DISIMRASEHAKVGSPKLRASEMEFCGVGGYRASAFGEFQMEIMIDDFSYS
FT                 ILIRVVPDTVLQYGLLIGADFLDTVEVNLRRGLISITPICDQAADDETRSE
FT                 VFAIDLRDASEADVSNVQSAEHRHIITNLVENYRPNRIQEVDVKMTIIVKD
FT                 DEPIYQKARRLSQFERDIVNAQVDEWEKQGIVRPSISDFASPIVLVKKKDG
FT                 SHRLCVDYRMLNTKIIKDRYPLPLIEDQLDRLQDARVFSTLDLKNGFFHVR
FT                 MEQASIKYTSFIVPDGQYEFLRVPFGLCNSPSVFQRFVNTIFRDLVKQRIL
FT                 LVYMDDLIVLSKDEDDGLKNLGTVLETAGRAGLAISWKKCQFLQRKVEFLG
FT                 YVIEHGTIRPSERKTSAVAHFSEPRNARQIQEFLGLSGYFRKFIKGYSIIA
FT                 RPLSNLLKANVKFQFNAVERSAFERLKSILCERLILSLYRAGAETELHTDA
FT                 SMHGYGAILLQRNSEDRLLHPVYYASGKTTSAEEKYTSYELEVLAIVKALK
FT                 RFRVYLLGIEFKIVTDCRAFALTMSKRDLCVRVARWALLLEEFRYSIEHRP
FT                 GKSMTHVDALSRSPLPDCLVVSKCDEGLLARLKKAQGEDSDLKKIFNAIDR
FT                 GESSSYAIRGGILYRDTDGDARVVVPKVMRRQIIRRAHEQGHFGVIKTEAL
FT                 LKRDYWIPDLRTEVERVVRSCVACILAERKHGKSEGFLNPIEKGSVPLDTF
FT                 YVDYLGPLPSTKKSYVHIFVVVDGFSKFVWLYATKSTGATDAIERLRKQSF
FT                 IFGNPRRIVSDRGSAFTSGEFEEYCRSESIEHQLITTGVPRANGQVERVNR
FT                 TLIPLLTKLSAPKPHEWYKYLDAAQLSLNATLHRSIGIEPFRVMLGVHPRI
FT                 RDNPDIKQLLENEFIASFNDDREELRELAKKNIEKVQRENKASYDKRRKKA
FT                 SRYREGDLVAIRRTQQGPGLKFAHKYLGPYEIIKALRNHRYVVRKIGEHEG
FT                 PLQTSSAVDYMKPWIDDDDLSKDMSESKGEE"
XX
SQ   Sequence 4567 BP; 1350 A; 912 C; 1283 G; 1022 T; 0 other;
     tttgggggct cgtcaaaaat tcgggatcgg ataaaacgga tttagaagac gtgtatcgtg        60
     tgagcgagta tttgagagag tgacgttgcg aattttgaga cggttgtgtg gcaaacgacg       120
     gttgcgacga cgacgacgac gatagcgagg acgacgaaag gtgacgacat acgtttcgcg       180
     agagcatgtt tgactctaac gtgcttacag tagcgaaatt aagagaaaag ctaaaagtgc       240
     gcggattgcc aatggcgggg tcaaaggcgg aacttatcac gcgtcttatg gatgccgatc       300
     cggctggcgc gtggatggcg gaggagcaag agcatggtgg agacgacgag gatgcttata       360
     ttgaccaggc tcagataaca gcagccgaga agttcaagga accaccagtt ataccagccg       420
     ccgaagctgg tagtagcact acgggtgtta ctccgataca agaagaaaac gacatcgaaa       480
     ggagagacaa tgcattgcga cggcgagagg tcgaatttta taagcgcgaa aaggaagtcg       540
     cagagcgcga gcttgagcta gcccgacgcg agatcgcgat acttcgcgaa caaaggcgaa       600
     acccagagac ggcggttgtc ccggacgcga gaggagtagc agttttccat gagcaaccac       660
     gagtgagtct cacgatgatg ggagacctgt tgagcgattt tgatggcgtt tcgagtgatt       720
     tcagcacatg ggaaagacaa ttaagatttg tgaagatgac ctatcgattg gacgattgtg       780
     tcaaaatcct tatgggtatg aagctaaaga aaaaagcatt tgaatggttc cactcgaggc       840
     cggaacacat aagcatgtcg ttcgagacaa tcctagaaaa gctgagagca atgttcgagc       900
     gctatgaaag taagctaacg atacggaaaa aatttgaaga ccgcgcctgg agaaaagaag       960
     agtcgtttca tgaatatctt cacgataaga caatcatggg caaccgtgta ccagtggaca      1020
     aggacgaatt actcgagcac attatagacg gcattccgga cgatacgctg cgcgaccagg      1080
     cacgcatgca ggagtttcca tcagctgatg cacttttgag agcgttcagc agaataacgt      1140
     tacgaaatcg caatgtgacc ggcctggatc ggcgggacgg gcgaggcgtc ggaccgggtg      1200
     agcggcgtga gcggattgtc gggtctggag agtggagcgg tgggggaagc ggtgacggca      1260
     ggagaggaac accaggcgct gaacgctgtt tcaactgcgg cgcccgagac catgttagcg      1320
     cgaattgccc gacgaaaagt ctcggcctta agtgtttcga atgtggtaaa aatggacaca      1380
     tcgcattgaa atgccctaaa aaaaatggtg agccaaagaa aactgtcgta gcagcggtgt      1440
     cacaaataga acgtaagaaa tatacgaagg atgtaataat gggcgatcga gttatcaccg      1500
     cgttaataga tacgggaagc gacatatcga taatgcgagc cagcgaacac gcgaaggtag      1560
     ggtcgccgaa actgcgcgca tcggagatgg aattttgcgg ggtgggcggc tatcgtgcgt      1620
     cggcttttgg cgaatttcaa atggaaatta tgatcgacga cttttcttat tcgatactta      1680
     ttcgggttgt cccggatacc gttttacagt atggactact tatcggcgcg gattttttag      1740
     atacagtaga ggttaatttg aggcggggcc tgatttccat tactccgatt tgcgatcagg      1800
     ccgctgacga cgaaacgcgg tcggaagtgt tcgcgattga tttgcgggac gcgagcgagg      1860
     cggacgtatc gaacgtacaa agcgccgaac atagacatat tataacgaat ctggttgaga      1920
     attaccgacc aaacagaata caagaagtcg atgtaaaaat gacgattatt gtaaaagacg      1980
     acgaaccaat ataccaaaaa gcgagacggt tatcgcagtt cgaaagagat atagttaacg      2040
     cccaagttga cgagtgggaa aagcagggta tagtccgacc ttctatttct gatttcgcaa      2100
     gccccattgt tctagtaaaa aagaaggacg ggtcgcatag gctttgcgta gattaccgaa      2160
     tgctcaatac gaaaataatc aaagatcgat acccacttcc tctgatcgaa gatcagttag      2220
     acaggcttca ggacgcgaga gtttttagta ccctcgattt aaaaaatggt ttttttcatg      2280
     tacgtatgga acaagctagc ataaagtaca catcttttat tgttccggac ggtcaatacg      2340
     agtttctcag ggttcctttc gggctgtgta attccccgtc agttttccaa agattcgtta      2400
     atacgatttt tagagatcta gttaaacaaa gaattttatt ggtttatatg gacgacttaa      2460
     ttgtactttc taaagacgag gacgacggat tgaaaaatct tggaacggtt ctggaaacag      2520
     ccggtcgagc cgggttagcg ataagttgga aaaaatgtca gtttctgcaa cgaaaggtag      2580
     agtttctcgg atacgtgatt gaacatggaa caatacgacc gtccgagcga aagactagcg      2640
     cggtagcgca cttttctgaa cctcgaaatg cgcgacagat acaagaattc ttaggcctaa      2700
     gcggttattt ccgcaagttt attaagggat acagcataat cgcacgaccg ttatcaaact      2760
     tgttaaaagc taacgtaaaa ttccaattta acgcagttga aagaagcgca ttcgagcgat      2820
     tgaaaagtat attgtgcgag cggctaatat taagtctgta tcgggcgggc gcagaaaccg      2880
     agttgcacac ggacgcgtcc atgcacgggt acggagcgat tcttttacag agaaatagcg      2940
     aggaccgttt gttgcaccct gtgtattatg caagcggaaa aacgacgtca gccgaagaaa      3000
     aatacacaag ctacgagctg gaagttctcg caatagttaa agcgctcaag agatttcgtg      3060
     tgtatttatt aggcatagag tttaaaattg taacggactg tcgagcgttt gcgttaacaa      3120
     tgtcgaagag ggatctttgc gtgcgagtag ctaggtgggc attgttgttg gaggaattcc      3180
     gatacagcat tgaacataga ccgggtaaaa gcatgactca tgttgacgct ctaagtagaa      3240
     gcccattgcc tgactgtttg gtggtaagca aatgtgatga gggattgcta gcgcgactaa      3300
     aaaaggcaca aggagaagac agcgatctta aaaaaatttt caacgcaatt gaccggggag      3360
     agtcgagcag ctacgcaatc cgaggtggaa tcctatatcg agacactgat ggcgatgctc      3420
     gcgtggtggt tccaaaggtt atgcggaggc aaataattag acgagctcac gagcagggcc      3480
     actttggggt gatcaagacg gaggctctgc taaaaaggga ttactggatc ccagacctgc      3540
     gtaccgaggt cgagagagtc gtacggagct gcgttgcctg tatcctggcg gagcggaagc      3600
     atggaaaatc ggagggcttc ctaaacccga ttgaaaaggg cagtgtgccg ctggacacat      3660
     tttacgtcga ttatctgggc ccactaccgt caaccaagaa aagttacgta catatcttcg      3720
     ttgtggtgga tggattctca aaattcgtct ggctgtatgc gaccaagtcg acgggcgcga      3780
     cggatgcaat tgaacgtctg agaaagcagt cgtttatatt tggtaatcca agaagaatcg      3840
     tgtcggacag aggttctgca ttcacgtcgg gggaattcga ggaatattgc cggtcagaga      3900
     gcatcgaaca tcagctgatc accacgggag tgccgagggc caacggccag gtcgagcgag      3960
     tgaatcgcac tctcatacca ttactgacaa aattatcggc tcctaaacca cacgagtggt      4020
     ataaatattt ggatgccgca cagttgagct tgaacgcaac attgcatagg agcattggaa      4080
     tagagccttt ccgcgtgatg ctaggcgtgc atccacgcat tcgcgacaat cccgatatca      4140
     agcagcttct tgagaatgaa tttattgctt catttaatga tgaccgagag gagctacgag      4200
     aactggccaa aaagaacatt gagaaagtgc agagagagaa caaagcgagc tacgacaaga      4260
     ggagaaagaa ggcatctcgc tatcgtgagg gggaccttgt ggcaatcaga cgtacgcagc      4320
     aaggacctgg attgaagttt gcacacaaat atctgggacc atacgagatt attaaagctc      4380
     tgcgcaacca tcgttatgtc gtgcgcaaaa tcggggagca tgagggaccc ctccaaacgt      4440
     catcggccgt ggattatatg aaaccatgga ttgacgacga cgatctttct aaggatatgt      4500
     cagagagcaa aggcgaggag tagagaagtg agcggtcggg acgaccactc agtcaggaat      4560
     ggccgag                                                                4567
//
ID   Gypsy-24_LH-LTR repbase;    DNA;    INV; 285 BP.
XX
AC   ADOQ01005425;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_LH_;
KW   Gypsy-24_LH-I; Gypsy-24_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-285
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005425; Positions     683     967.
XX
SQ   Sequence 285 BP; 86 A; 55 C; 58 G; 86 T; 0 other;
     tgtggaataa ataacgttga atataacgac acaattgtaa gacacagctc gacagctccg        60
     aatattcaaa ggtagcgtta cagcgataat atttgtgttt ttcgtacacg cgtttgcctc       120
     gtgctgttcg gcttcgaatg tcgacggttt tgcgaagaca gtcagtcgtc ctcgagcgat       180
     aaaacgatac atcacgacgc gagaataata gagagaactc tgtaattccg attctatatc       240
     cgcctgtatt tttaatggtc gaaatatata ttattttata ctaca                       285
//
ID   Gypsy-24_LMi-I repbase;    DNA;    INV; 4086 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4086
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..944
FT                 /product="Gypsy-24_LMi-I_1p"
FT                 /translation="MPDPPPAAEVPTGVIINRVAVKPPPFWQQNPVLWFAQ
FT                 LESQFVLTHVTADETKYSYVVAALNEDMAAEVQDILASPPSTDRYMTIKNA
FT                 LITRLSQSEAKRLEKLLRTEELGDRTPSQLLRRLRTLAGNAISDEILRNIW
FT                 LSRLPPDTQKILTVCAGDLDALAQTADRIMEMYPATCVAPVSSQPKEDNTL
FT                 ADLQTQVAELTAQIASLRAECSNRRSRRRRSQGRHSRSPSSSRVCWYHRRF
FT                 GSEARKCSPPCEKGNAQESQ"
FT   CDS           join(947..2113,1951..2562,2286..3131,3227..3685)
FT                 /product="Gypsy-24_LMi-I_2p"
FT                 /translation="MTATDFPGGSRRLFVTERNTKLQYLVDTGADVSVYPS
FT                 NRLPHRSRDDYKLFAANGTAIPTYGRVMLILNLGLRRNFEWRFVVADVTQP
FT                 ILGADFLSYYGLLPDLRHRRLVDSITKLTSHGKIRCVEDTTVRVIAGDSPF
FT                 IELLKQFTEITYQTPKLAPIQHSTLHYILTTPGPPLHARPRRLTPEKLKVA
FT                 KQEFSSMLAQGICRPSSSSWASPLHVVPKKNNGWRPCGDYRRLNARTMPDR
FT                 YPVPHIEDFASNVHGKCIFSTLDLVRAFYQIPVAPEDVPKTAVCTPFGLFE
FT                 FARMPFGLCNAAQTFQRFMDEVTRDLDFCYVYIDDVLVMSSSEAEHLEHLR
FT                 QIFTRLQTHGLLINPSKCVFGATEVQFLGHTVNAQGIRPPQEKVRQSRTPG
FT                 TSTTNFHPPTDPWLTHKPIKVCFWCNRSPVSWPYGQCTRNTTTTRESEAII
FT                 NYPQPTTVKELRRFLGVLNYYHRFVRNHALLAAPLNELLRGTPKPTDKLSW
FT                 NSETEAAFANLKTAIAEAALLAHPVPQAPLALMVDASATAVGAALQQQVGD
FT                 HWQPLASSARSYHHHSETGPPMTESCMQHMPPSGSFVTCWKDNTSHSSIRQ
FT                 FEDCHRRSCPAGPSSSAGTSRPHGRCVCNCSRCSTPTASRGSLAAPSFFSK
FT                 KLSPSQRNWSTYDRELYAAYASIRKFRHMLEGQHFTLVTDHKPLTYAFRQR
FT                 PDKASPRQLRHLDYIGQFTTNIVHVEGDLNVPADALSRIEAIADALDFEAL
FT                 AQAQQSDDELQDLLTRPSGLQLRQXQVPPSNVMLYCDVSTSKPRPFVTADF
FT                 RQQAIASLHNLSHPGVRGTIRMVKRAFVWPNMDKRCKEFVRQCWHVNATKS
FT                 VGMCDHLLAHSLHPIKGLNMSIPTSPPRLCNHILPGMDCPFWRTAAITTDQ
FT                 GRQFESYLFKALAVLLGMKRIRTAAYHPAANGLVERMHRQLKASLRCHDSQ
FT                 RWTETLPIVLLGLRTAIKEDVGATAAELVYGQPIRLPGEFFGNMPDDHIEP
FT                 SDFVCKLRTHIRQLRPVAQGNK"
XX
SQ   Sequence 4086 BP; 1098 A; 1154 C; 919 G; 913 T; 2 other;
     attggtgacg ccgacgtgat cacgagccgt gtttcgccaa aaataagcaa ccgcgtcgcg        60
     tattacgccg agccgcgccc gtgtaactgt aaaaacaaca tccgcgtcaa ccgcgtcgcg       120
     tatctcccgc gttcttcgca actgtaactc aaatctcaac gatgccagac ccgccaccgg       180
     ctgctgaagt acctacaggg gtgataatca atcgtgtagc ggttaaaccg ccaccatttt       240
     ggcagcaaaa tcccgtcctt tggttcgcgc agctagaaag ccagttcgtg ttgacgcacg       300
     ttaccgcgga cgagacaaaa tacagttatg tcgtcgccgc gctcaacgag gacatggctg       360
     ctgaagtaca ggacatatta gcgtcaccac caagcaccga ccgttatatg actatcaaga       420
     atgccttgat tactcgccta tcacaatctg aggcgaaacg cttggaaaag ctattgcgca       480
     cggaagagct gggcgaccgc actccatcac aactactacg ccgcctacgc acattagctg       540
     gaaatgctat tagtgacgaa attcttcgca acatctggtt atcacgcctg ccaccggata       600
     cacaaaagat attaacagtg tgtgccggtg atcttgatgc actcgcacag acggcagatc       660
     gcataatgga aatgtatccg gcgacgtgcg tcgccccagt tagctcacag cctaaagagg       720
     ataacacact tgctgaccta caaacgcaag ttgctgaact caccgctcaa attgcaagtt       780
     tacgagctga gtgttctaac cgtcgatccc gtcgccgccg ctcacaaggt aggcacagcc       840
     gctcaccttc atcatctagg gtatgttggt accataggcg attcggctca gaagcacgaa       900
     agtgcagccc tccctgcgag aagggaaacg cacaggagag tcagtgatga cggccacgga       960
     ctttccaggc ggcagccgtc gcttattcgt gacagagcgc aataccaagc tgcagtactt      1020
     agttgacaca ggcgctgacg tgtctgtcta cccatcaaat cgcctgccgc accgcagccg      1080
     cgacgactat aaactttttg ccgccaatgg tactgcaatt ccaacatacg gacgtgtcat      1140
     gttaatattg aacctaggcc taagacgtaa ctttgagtgg cgatttgttg tggcagatgt      1200
     aacgcaacca atactcggag cagatttcct gtcttattat ggactcctgc cggacctccg      1260
     acaccgccgt cttgttgact ctattacgaa actaacaagt cacggaaaaa tacgttgcgt      1320
     ggaagacaca acggttcgag tcattgcagg tgattctccg tttatagaac ttttgaagca      1380
     gttcacggag ataacttacc agacacccaa attagctcca atccaacatt caacactgca      1440
     ttacattcta actacgccag gaccaccact ccatgctcga ccgcgccgtt taacacctga      1500
     aaagctgaaa gtagcgaagc aagagttctc atctatgctt gcacaaggaa tctgccgacc      1560
     atcaagcagc agctgggctt ctcctctaca tgttgtaccg aagaagaaca atggctggcg      1620
     tccgtgtgga gattacaggc gactcaatgc caggacaatg cctgaccgct acccggtgcc      1680
     gcacattgag gacttcgcat caaacgttca tggtaaatgc atcttctcta ccttggactt      1740
     agtgcgtgca ttctaccaga ttcctgtggc accagaagac gttcctaaaa ccgctgtctg      1800
     cacgccattt ggtctatttg agttcgccag aatgcctttc ggactttgta atgctgccca      1860
     gacattccag cgattcatgg acgaggttac acgtgatctt gatttctgtt atgtctacat      1920
     tgacgatgtt ttggtcatgt ccagctctga agcagaacac ctggaacatc tacgacaaat      1980
     tttcacccgc ctacagaccc atggcttact cataaaccca tcaaagtgtg tttttggtgc      2040
     aacagaagtc cagtttcttg gccatacggt caatgcacaa ggaatacgac caccacaaga      2100
     gaaagtgagg caataattaa ttatccacag ccaacgacag ttaaagaact gcgacgattt      2160
     cttggtgtac tgaactacta ccatcgtttt gtgcgtaacc atgccctcct ggctgcacct      2220
     ctgaacgaat tgttacgagg cacaccaaaa ccaactgata aactgtcgtg gaacagtgaa      2280
     actgaagcag cattcgccaa tttgaagact gccatcgccg aagctgccct gctggcccat      2340
     ccagttccgc aggcacctct cgccctcatg gtcgatgcgt ctgcaactgc agtcggtgca      2400
     gcactccaac agcaagtagg ggatcactgg cagcccctag cttcttcagc aagaagttat      2460
     caccatcaca gcgaaactgg tccacctatg accgagagtt gtatgcagca tatgcctcca      2520
     tcaggaagtt tcgtcacatg ctggaaggac aacacttcac actagtgact gaccataagc      2580
     cgctgactta tgcttttcga caacgcccag acaaagcctc accacgtcag ctacgccacc      2640
     tggactatat tgggcaattt accaccaaca ttgtgcacgt tgaaggagac ttaaatgtgc      2700
     cagcagatgc cctctcccgg attgaagcga tcgctgatgc acttgacttt gaggccctag      2760
     ctcaggcaca acaatctgac gacgaactgc aggacttgtt gacacgacca tcaggtctgc      2820
     agctccgcca gatkcaagtg ccaccatcca atgtcatgct gtactgtgat gtctctactt      2880
     caaaaccgcg accgtttgtg acagcagatt tccggcagca agcaatcgcc tccctgcaca      2940
     acctgtcaca tcctggagta cgtggtacaa taagaatggt caaacgagct tttgtgtggc      3000
     ctaacatgga caaaagatgt aaggagtttg tgcgccagtg ctggcatgtc aacgcaacaa      3060
     agtcagtcgg catgtgcgat cacctcttgg cacattccct ccacccaatc aaaggtttga      3120
     acatgtccat ctagacatcg taggaccgct tccaccgtcg aagggtacac ctattgcctc      3180
     actgccattg accgctacac tcgctggcca gaagtgttcc ctatgaccga catcaccgcc      3240
     gagactgtgc aaccacattc ttccggggat ggattgcccg ttttggcgta ccgctgcgat      3300
     taccaccgac caggggagac agtttgagtc ttacctgttc aaggcactcg ccgtcctgtt      3360
     aggtatgaaa cgcataagga ctgcagctta ccacccagca gcaaacggcc tagtggaacg      3420
     aatgcaccga caactaaaag catccctgcg atgtcacgac tcacaamgat ggactgaaac      3480
     gctgcctatc gtcctgctgg gcctccgcac agctattaaa gaagatgtag gagccacagc      3540
     tgcagaactt gtgtatggcc aaccgattcg tctacctggc gagttcttcg gcaacatgcc      3600
     agatgatcac attgaaccat cagactttgt gtgcaaactg cgcactcata tccgacaact      3660
     acgacctgtg gcccaaggga acaagtaagt caccgcccat tcgtattcaa cgaactagga      3720
     acatgtgact atgtttttgt gcgacacgat gcagtgcgca aaccacttca accaccatat      3780
     gatggaccct atcgtgtact cagcagagaa gaaaagacat ttacagtgat ataatgggta      3840
     caccaaccgc tgtcagcatt gacaggctaa aaccagcctt cagcacctct ttcaatgaca      3900
     gaaccgtacc ttcagaccca acagacatat cacctgctcc gcttcctacc aacaatcaac      3960
     cacaatggac gtcacgggcc gccgcacagg acaccgctgc atccagttca agacctgttg      4020
     tgacccgatc cggacgacat gtcaaattca accgtaaata tcgttgacac taaagggggg      4080
     gagtga                                                                 4086
//
ID   Gypsy-24_LMi-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-166
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 166 BP; 38 A; 20 C; 34 G; 74 T; 0 other;
     tgaagtgtgg tgatttatcg aattgcgatt actctgtgca tacatatctc tgacttgtgt        60
     ctgttccttt gttatgtgta attattcttt tgttgttaat tagtctgtgc atatgttaca       120
     gttgaatgta gtatgtcgtt aataaattgt gtttaattac gcgaca                      166
//
ID   Gypsy-24_MoPha-I repbase;    DNA;    INV; 9003 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-9003
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1103-1103 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1534
FT                 /product="Gypsy-24_MoPha-I_1p"
FT                 /translation="MPLTRSQGSNPPSEGEREPVTTPPSLTASEIEALNRK
FT                 LNEKEKQLQMQAETLKKKQEEMDRIRQQLDDAQEQIQDDVPEIINARMTRL
FT                 EQTIASLATELPELLSSMSRHISEIQENSHCSQRSNERRDNTPRPKSPESH
FT                 YIRLKDVIDSIPKYDGHKMSVFQFCKICEKALNLIPTWQEYHLVQLIINKL
FT                 YGHAYSAIEGTEYNSVFELTRRLRRIFGPNKSCDQYRGELANIYMRPNENL
FT                 FDYIERVKELRTAIIDEETCMTGYIDPSIRDTIEGNAKESFVNGLPSDLLI
FT                 RVKLQGYYSLDDAIMTAIQLSKQLEAENLRKRNTILKPPPMMRADVYNGGK
FT                 RPPDNSRDMPHNKPPVASQAPFIKPLIPGQPGPNAPQICFYCKSPGHFMRD
FT                 CQKLSYRRANGGAPSASAAMHAGSGNLRSAPVMSGVRRDAAPIGRPSTSVL
FT                 TVKEPEIAPLPTSPE"
FT   CDS           6929..8992
FT                 /product="Gypsy-24_MoPha-I_3p"
FT                 /translation="MLFYLTFVIFISSGSALMGFDCGGQHLNVTTISLLDV
FT                 GECNLNIRKPNTTQVYIQLLQLSEYRHAEIMQCKVEISRTIYKCGMFHHIS
FT                 IVNNGQADYVQETGYAQCKRLLQDGTISMGAEIYLHGIRVNQTTTRSITLA
FT                 GRIDSDGKCHTVQQYSDPYGTWDDVMVQGVVKITLKSSYVPVNLDAGKIML
FT                 KSGTVCPLKDGFCIDSEDGYTYWKPVPVTTCDFHQYDVLYEGTASKTQEDI
FT                 DDLSSPVIYSLVAQDITFALTKTKELQLCGYTLFRTEHPKLFILETRRGDA
FT                 PLRREQIAMENLDIFTYMNSKFVYVEKHLRQQMVTLYHNVMQQKCELERQV
FT                 ITNTLSFATLQPDEFAYRLMKGPGYMAVMSGEAIFVIKCIPVDVKIRHTKE
FT                 CYNELPVTLHNKTFFLTPKSRIITKYGVQKECDHKLPTLYRVDNMWVQFTP
FT                 DPQERQIPPQQLQPMTKLTWKYLTPAPLADSGIYSKKDIERIREHIMFPAE
FT                 KPALLNTIARGLVGHTFDSNSVSVSNLLDEASLNKIVESATSRIWKGFLTF
FT                 GSATAGIFGIFLIIRIIKLIIDTAIHGYALHTVYGCSMHLLGAIWSSLTHL
FT                 LLHLAHGPPKKLENQQRDTTQEQLLEATHPQELPTSIQPTPGPMYNWKGYS
FT                 DNVPTAPNSKYNTYTYKNLSERLDMVEQIPPNTSEFVQK"
FT   CDS           1312..5643
FT                 /product="Gypsy-24_MoPha-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="ITRSFYERLPETFVSQSERRRTLSFSRYARRFGKLEK
FT                 RPGNERRPPGCSSYRTPVNERVNCEGTGNCPSAYIARINTEIKTSCYPMVT
FT                 LSSPDLLRRCVFMIDSGSGVNLLKESSIDITIPWEDERSHLLHGISSLPVE
FT                 TLGSVLIQLVGKPTLFHIVRDSVGFVQDGILGNQFLQDRTASINFKDRYLH
FT                 YDNSAIPFSEITSTKITKRTISPFFVNVTNPEKTSGYIPRTTLTKGLFFGD
FT                 AIVTNVKGRAYLPIVNTTDTDYKVEIPSLELEDFDLVDPSNIDTCNSSDYK
FT                 EEESKNHSAQTLGHGADDSCVIRNKIHESNDTLVGNSLAENRAKPESDGTL
FT                 AKNSPAENHFEAGQLTETPGKTGAVAVSNLLYFCEINQDNEDRLFEIKNLL
FT                 RLDHLNSEEKDSILSLIARHADRFHLPKENLGATNAAEHSIPTINDVPIHT
FT                 KQYRFPPVHKAEIDSQVNKLLSSDMIEYSSSPYNSPVWIVPKKPDSLGNKQ
FT                 WRMVIDYRNLNEKTIGDAYPLPNITDILDQLGSAKYFSVLDLASGFHQIPM
FT                 APKDAPKTAFSTPYGHYQFKRMPFGLKNAPSTFQRLMDNVLSGLQGNELFV
FT                 YMDDIVIYARSLKEHEVKFERLMKRLKAANLQLQPDKCEFLRQEVAYLGHI
FT                 ICADGVRPDPNKVEAVIKFPVPKNVKNIKQFLGLVGYYRKFIPNFSKIAKP
FT                 LTDLLKKDTIFNWQQKHTEAFDILRLSLCSEPILQYPDFNKPFTLTTDASG
FT                 YAIGGVLSQTCTGQDLPVAYTSRTLNKAEQNYSTIEKECLAIIYCINHFRP
FT                 YLYGRKFTIVTDHKPLVWLHSVKDPSSRLWKWRTKLAEYEYEIKYKKGQLN
FT                 YNADALSRNPPDVVALPLSTNDVTPPRPPSPDVIIEECSENGDSDDEDNEN
FT                 GSSHNEYDPNQFTETDNEGDEPSYEEIIEPTHIQRNIVPTPQGEQPLVRLT
FT                 IKETRDNLLDRPDNHVIFIHLNGTPFDSGAREYQKRNLLPKYQNLNYERAN
FT                 VIMRKRKYVLISIPIKFNQRTPIEPQTLDNSLQSLVDVITELQLTSLSISK
FT                 TNFFDDLPWQYVEKRLRAHLTDIPLNLIICKNLIRTPDPQTREALITESHA
FT                 SACGGHKGVTKTYNRLRVNYYWNTMKRDIQKFIQRCRLCQLKKLTRVKTKQ
FT                 PMIITDTPGEAFDKLSLDIVGPLPITRNGSRYILTMQDLLTKYSLAVPLGE
FT                 ATSLTIADAFAKKFICIYGTPKAILTDQGTNFLSSLIRSLTRRFGIQHFKT
FT                 TAYHPQSNGSLERSHHVLMEYLRTQVEKEENWDEYMELAMFSYNTSVHEGT
FT                 QYSPFELVFGRLARLPSAHLPIDEILETTYYEYLSNLFNKLRDLQEDARLN
FT                 LTKAKQRSKHYYDKKSHPQRFEVGSYVFLLKEPFKGKFAAQYRGPYLITEI
FT                 LPNNNVKLLIGRQTRIVHTDKLKIAHIDPG"
XX
SQ   Sequence 9003 BP; 2881 A; 2115 C; 1730 G; 2277 T; 0 other;
     agttaaataa tctttttggt ggcagcggtg ggattgtgtc aaaaggatcg atcggagcaa        60
     cgcgtaatag aataaaatca actaaaacca taaggatcaa gcattcgaat attcgatttg       120
     ttcagtttcg atcttatcat tattttgcct aatcatgcct ttaacgagat cacaaggatc       180
     caatccccct tcagaaggtg aacgagagcc ggttactacc cctccttcat taacggcctc       240
     tgaaattgaa gcccttaatc gcaagcttaa tgagaaagag aaacaactcc aaatgcaagc       300
     agaaacacta aagaaaaagc aagaagaaat ggacaggatc cgccagcaac tagatgacgc       360
     acaagaacaa atacaagatg acgtgcctga aatcattaat gcaagaatga cccgtttaga       420
     acagaccata gcatcattag ctacagagtt accagaatta ttgagttcca tgtcgagaca       480
     catttcagaa atacaagaga attctcattg ctctcagcga agcaacgagc gtcgggataa       540
     cactccgcga cctaaatcac cagaatcgca ctatatacgg cttaaagatg ttattgatag       600
     tatccctaaa tacgatggcc ataaaatgtc tgttttccaa ttttgtaaaa tatgcgaaaa       660
     ggctcttaat cttattccaa catggcagga ataccatctg gtgcaattaa taataaataa       720
     actatatggt cacgcatatt cagccatcga agggacagaa tacaattcgg tatttgagct       780
     gactcgaaga ctacgaagga tttttggacc caataaatcc tgcgatcagt atagaggcga       840
     attggccaat atttatatga gacctaacga aaatctgttc gactacatag agcgtgtaaa       900
     agagttacgc accgccatca tagatgagga aacctgcatg accggatata tcgatccctc       960
     catacgagat accattgaag ggaacgccaa agaaagcttt gttaacgggc taccgtccga      1020
     tcttctgata agagtaaaat tgcaaggata ttactcctta gacgatgcca ttatgacagc      1080
     tatccaatta tcaaagcagt tggaagccga gaatttgagg aaacgcaaca cgattcttaa      1140
     accgccacct atgatgcgag ctgacgttta taatggagga aaacgtcctc cagataatag      1200
     tagggatatg ccgcataaca aaccccctgt tgcctcccaa gcccctttca tcaaaccctt      1260
     gatcccggga caaccaggtc ccaacgcgcc tcagatttgt ttttactgta aatcaccagg      1320
     tcattttatg agagattgcc agaaactttc gtatcgcaga gcgaacggag gcgcaccctc      1380
     agcttcagcc gctatgcacg caggttcggg aaacttgaga agcgccccgg taatgagcgg      1440
     cgtccgccgg gatgcagctc ctataggacg cccgtcaacg agcgtgttaa ctgtgaagga      1500
     accggaaatt gcccctctgc ctacatcgcc cgaataaata cggaaattaa gaccagctgt      1560
     tatccaatgg tgacgctatc gtccccagat cttctgaggc gatgtgtctt tatgattgac      1620
     tctggctcag gagtaaacct cctcaaagag agttcaatcg atataacgat cccatgggaa      1680
     gacgaacgat cacacctgct tcacggaata tcttccctac ctgtcgaaac tttgggatcc      1740
     gttttaatac aacttgtggg caaacctacg ctttttcaca tcgttcgaga ttctgttgga      1800
     tttgttcagg atggaatttt aggcaatcaa tttcttcagg atcgaactgc tagcattaat      1860
     ttcaaggacc gttatcttca ttacgacaac agcgctattc cgttttctga aataactagt      1920
     actaagataa cgaagagaac tatctcaccc ttcttcgtga atgttaccaa ccccgagaaa      1980
     actagtggat acatacctcg taccactctg acgaaaggac tattctttgg agatgctatt      2040
     gtaacaaatg tgaaaggaag agcttactta ccgatcgtta atacgacgga cactgactat      2100
     aaggtagaga ttccctcctt agaactggaa gactttgatt tggttgaccc aagcaatatt      2160
     gatacatgca actcaagtga ttataaagaa gaagaatcta aaaatcattc tgcccagacc      2220
     ctagggcacg gggcggacga ttcttgtgtg ataagaaata aaattcacga gtcgaatgat      2280
     actctcgttg ggaattcgtt agcggaaaac cgtgctaaac ccgagtctga cggtactctc      2340
     gctaagaatt cgcccgcgga aaatcatttt gaagcaggac agctcactga aacccccggg      2400
     aaaacaggag ccgtggctgt ttccaacctt ttgtattttt gcgagataaa tcaggacaat      2460
     gaggatcgcc tttttgaaat aaaaaacttg ttgcgcttgg atcacttaaa ctcagaagag      2520
     aaagatagta tcttgtctct tattgctaga cacgcggata gatttcatct tccgaaggag      2580
     aaccttggag cgactaatgc cgctgaacac tctataccca caattaatga tgttccgata      2640
     catactaagc agtatagatt tcccccggta cataaagcag agatagactc tcaagtcaat      2700
     aaactactgt cgagcgacat gatagaatat tctagttctc cgtacaactc ccccgtgtgg      2760
     attgtgccaa agaaacccga ctcccttggc aacaaacagt ggcgaatggt cattgactac      2820
     agaaacctta atgagaaaac cattggagat gcttaccctc tcccgaatat aacagacatt      2880
     ctagaccagc tcgggagtgc aaagtatttt tctgtccttg atttggcatc gggattccac      2940
     caaatcccta tggccccgaa agatgcgccc aaaacggcct tttctactcc ctacgggcat      3000
     tatcagttta agaggatgcc cttcggatta aagaacgcac cctctacgtt ccaaagatta      3060
     atggataacg tactttcagg acttcaagga aacgaactat tcgtgtacat ggacgacata      3120
     gtaatctatg cccgatcact aaaggaacat gaggtaaaat tcgaaagact aatgaagagg      3180
     ttaaaagcag ctaatctaca gttacaacct gacaagtgtg aatttttgcg tcaggaagtc      3240
     gcctatctag ggcacataat ttgcgcagat ggcgtccgcc ccgatcctaa taaggtcgag      3300
     gctgtgatca aatttcccgt ccccaaaaac gttaaaaaca ttaagcaatt tctcggacta      3360
     gttggatatt acagaaaatt tatccccaac ttctcaaaaa tagcgaaacc actgacagac      3420
     cttttaaaga aagatacgat atttaattgg caacagaaac acaccgaagc ttttgatatc      3480
     ctgagacttt cattgtgctc agagccaatt ctgcaatatc ctgattttaa caaacccttt      3540
     accttgacta cagatgcttc cggatatgcg atcggtggag tcctcagtca aacatgcacc      3600
     ggacaagacc tacccgtcgc atacacgtcg cgaacgttaa acaaagcaga gcagaattat      3660
     tccactatcg aaaaggaatg tctagccatc atctactgta tcaatcattt tcgaccctac      3720
     ttatatggac ggaaatttac gatcgtaacc gatcacaagc ctttggtatg gcttcactct      3780
     gttaaagacc cttcttctag actctggaaa tggagaacaa aactagccga atatgaatat      3840
     gaaataaaat acaaaaaggg acaattgaac tataatgcgg acgccttatc tcggaaccct      3900
     ccagacgtgg ttgcactacc actgagcacc aacgacgtga cccctccccg acctcccagc      3960
     cccgacgtga tcatcgaaga atgcagtgag aacggagata gtgatgacga agataatgaa      4020
     aatgggagca gccataacga atatgacccc aaccaattca ctgagacaga taacgaaggc      4080
     gacgaaccct cttacgaaga aataatcgaa cctacccata tacaacgcaa cattgtccct      4140
     acgcctcaag gagaacaacc attggtcagg ttaaccataa aggaaactcg cgataatttg      4200
     ctagatcgtc ctgataatca tgttattttt atacatttga atggaacacc ctttgatagc      4260
     ggcgctcgtg aataccaaaa acgaaatctg ttacccaaat atcaaaatct caactacgag      4320
     agagccaacg ttataatgcg aaaaaggaaa tacgttttga tatcgatacc aataaaattt      4380
     aaccaacgta ctccaattga acctcaaacc ctagataatt cattacaatc tcttgtcgat      4440
     gttataacgg agttacagct tacgtctctt agcatcagca agacaaattt tttcgacgat      4500
     cttccatggc aatacgtgga aaaacgactt cgagcccact tgacggacat ccccttgaac      4560
     cttatcatct gtaaaaatct aatacgaaca cctgacccac agacccgaga ggcattgata      4620
     actgaaagcc acgcatccgc gtgcggcggt cacaaaggag tgacaaaaac atataatcga      4680
     ttaagggtta actattactg gaacactatg aaaagggata ttcaaaaatt tattcaacgg      4740
     tgtcggctat gccaattgaa gaaattaact agggtaaaaa ccaagcaacc aatgattatc      4800
     accgacaccc ctggggaagc ctttgataag ctctccctcg atatcgtggg accgcttccc      4860
     attacaagga acggaagtcg ctatatactc accatgcaag atctattaac taagtactct      4920
     cttgctgtcc ctttgggaga agctacctcc ctgactatag ctgacgcttt cgcaaaaaaa      4980
     tttatttgta tttatggcac acctaaggct attctgactg atcaaggaac aaattttctg      5040
     tcatcgttaa tccgtagtct cacacggaga ttcggaattc aacattttaa gactacggca      5100
     taccaccctc agtctaatgg atcgttggag agatctcacc acgtgctaat ggaatatcta      5160
     cgcacgcagg tagagaaaga ggaaaactgg gacgaatata tggagttagc tatgttttca      5220
     tataacacta gcgttcatga gggaactcaa tactcccctt ttgaattagt cttcggaaga      5280
     ctagctcgat tgccctcagc acaccttcca attgacgaaa ttctcgagac tacctattac      5340
     gaatatttat ctaatctatt taataaatta cgcgatttac aagaagacgc tcgactcaat      5400
     ctcactaagg caaaacagag aagtaagcac tattacgata agaaatcaca cccccaaagg      5460
     tttgaagtag gttcatatgt atttctatta aaggaacctt ttaagggaaa atttgccgcc      5520
     cagtatcgtg gaccctatct tattacagaa atattgccca acaacaatgt caaattgcta      5580
     attggcaggc aaacccgcat cgtgcacacg gacaaattaa aaattgcgca tatagatcct      5640
     ggataaattt ttaacattaa tttatatgtt cacagatgcc aacggcgaac cgcggaccct      5700
     tcaaacttct tgattttgca tcgccgcctt cgctagtagt aaatcactat ttgaatttcg      5760
     ctcaatgttg ccgaatcttc ggttacatcg agcccgggaa aagcacctgt atatgtcaag      5820
     agtgtctcat acgatatgtt tcccttccag atcaagaatt ctacgaaaaa accttaaccc      5880
     attttgccaa agatggacca caagaatttt atatatactg tactatctgt cgcgcggggc      5940
     tattaattca aaaccccatc gcgtgttgcc ccgactgtac acgtgcacac gcgctcatgt      6000
     tatcacaaat caggctggaa ggccgtgatt accgagcctt gaattttgga gtattcctcc      6060
     acgcagggca ggatttccgt gtatcaccgt cctgggaagt cctcgtccaa gggcataact      6120
     cttaagtaat actattgaaa tcggaatctt acaggatgtg tcccccaagc gtcggtcgat      6180
     cctacacagg attgctccgc aactacccag acatttacca ggtccgatgc ataaaaggag      6240
     caatatacat ccggactgac gtcccggaaa caattaggct atgcttgaat tgctgggaga      6300
     aaaaccctat acccacattt agcaggaatt tttatcataa ttttacgtac ggttacataa      6360
     tccgccataa atgttttgcg tgtcacgagt tccttgttgc tgaaagacct ctctcggaat      6420
     gtctggattg cttgatcggg tacatatgtt gtataaacca cttcagagct caagggacgt      6480
     cccttgaccg tattaccttt ctattatttg acactaagcg atccgtactt cttagaggct      6540
     taataaggcc tagcgacaac gacaatatag gctctgaatc tagattagaa ccatattaca      6600
     tgtaaacctt tagctatact tactaccgta aacaaatatt atctaagcgt actctattat      6660
     atatattaca atacacaact atagaaatgt taactacaaa cttatttaca taattatcct      6720
     cgcttttatc gatacacatt acgcatacaa aatagaaatg ataaacacaa aaacaaccaa      6780
     atatttgcgt gcgaaataat gtacgtgcat atacatgtaa acaacatacc atgctaacaa      6840
     tacctaagta tatacgttat ttacgactaa taaattaata tgaaaaatta tatccatctt      6900
     tatttataaa tcttatgtat tccagattat gttattctat cttacgtttg taatattcat      6960
     atcgagcgga agcgctctta tgggtttcga ctgtggtggg caacacctaa atgtaaccac      7020
     aatatcgctg cttgacgtcg gggaatgcaa tctcaacata cggaagccaa acaccaccca      7080
     agtgtatatc caactcctgc aactctccga gtaccgtcac gctgaaatca tgcaatgcaa      7140
     ggtggaaatt tcacgaacca tatacaaatg cggaatgttt catcacattt ccattgtgaa      7200
     taatggacaa gctgattatg tccaagaaac cggatacgcc caatgtaaga gactgcttca      7260
     agacggaacc atctctatgg gtgcagaaat ctatttacat ggaatacgag tgaaccaaac      7320
     tacaacccgg agcatcactc ttgccggaag aatcgactca gatggcaagt gccataccgt      7380
     gcagcaatat tctgaccctt acggaacctg ggatgacgta atggtccaag gtgttgtcaa      7440
     gatcactttg aagtcttctt acgttcccgt aaacctggac gcggggaaaa taatgctgaa      7500
     atcggggacg gtgtgtccac tgaaggacgg attctgcatt gattccgaag acgggtacac      7560
     ttattggaaa cccgtcccag taacgacttg cgatttccat cagtatgatg tcctatatga      7620
     aggtacagcc tctaaaactc aagaggacat cgacgacttg tcgtcacctg taatatatag      7680
     cctggttgca caagatataa ccttcgcatt aactaaaacc aaggaactgc aactgtgcgg      7740
     atacaccctc tttcgcacag aacaccctaa gctgttcata cttgaaacta ggagaggaga      7800
     cgctcctctc cgccgcgaac aaatcgccat ggaaaactta gacatcttca cgtacatgaa      7860
     ctccaaattc gtgtatgtcg aaaaacatct acgtcagcaa atggtgacgc tgtatcacaa      7920
     tgtcatgcag caaaaatgcg agttagaaag gcaagtcatc accaatacct tatctttcgc      7980
     tactctacaa cctgacgagt tcgcctaccg actcatgaaa ggccccggat atatggcagt      8040
     catgtcagga gaagccattt ttgttattaa atgtatacca gtcgatgtca agataaggca      8100
     taccaaagaa tgctacaacg aattgccagt aactcttcac aataaaacgt tcttcctgac      8160
     tccaaagtct cgaataatca ccaaatatgg agtccagaag gaatgcgacc acaaattacc      8220
     tacgctatat cgtgtcgaca acatgtgggt ccagtttacg cctgatccac aggaacgtca      8280
     gatacctcct caacagttac agccgatgac caaactcaca tggaagtatt taacacctgc      8340
     tcctcttgct gacagcggaa tctattccaa aaaagacatc gagagaatca gagaacacat      8400
     tatgtttcct gcagagaaac cagctcttct taacactatc gctagaggac ttgtcggaca      8460
     tacattcgac tccaacagcg tctcagtatc caatttattg gatgaagcgt ctctcaacaa      8520
     aatcgttgag agcgcaactt ccagaatctg gaaaggattc ctaacatttg gatccgccac      8580
     cgccggaatt ttcggcatat tcctgatcat ccgcatcata aagcttatta ttgacactgc      8640
     tatccatgga tatgccctcc ataccgtcta cggatgcagc atgcacctcc ttggagctat      8700
     atggagctct ctaacgcacc tgctactcca cctggctcac ggaccgccca aaaaacttga      8760
     aaaccaacag cgtgacacga ctcaggagca actccttgaa gcaacccatc cccaggaact      8820
     tcccacgtca atacaaccca caccaggccc catgtacaac tggaaaggtt acagcgataa      8880
     tgtgccaact gcacctaact ctaagtacaa tacgtatacc tataaaaatc tgtcagaacg      8940
     cctagatatg gtagaacaaa ttcctccgaa tacatcggaa tttgttcaaa aatagggggg      9000
     aga                                                                    9003
//
ID   Gypsy-24_MoPha-LTR repbase;    DNA;    INV; 4282 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1188-1188 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 4282 BP; 1363 A; 882 C; 649 G; 1388 T; 0 other;
     tgtgacgtcc cgtcgtccca acccctcccc tttttctttt ttttcctatt tctatatttt        60
     tacttatatt tatcctctat taaccccatg gctttccctg atacttatgt atacccgcaa       120
     aataagaatt aaggtccatt tgaatgtgac aaagtacaga ctactagagt agtattgaac       180
     tgactcagca tgacaatctg agcagaccta agaccccaga tgcttattct tgaatcatac       240
     tcggggagcc atctagcgta ctagaagtaa actaacacgc gattcagtcc tatatattat       300
     tgataccttt tcaatttcac tactcacgct tattttaaaa ttctgaatga ctgcttttcg       360
     caattatgat ggttatatca agcttaatat tgtttatggg aaaattaaaa ttattcacga       420
     gatataatca tttaagggtc ttactcgaga ctacataagc aaaatattaa ttaacgaatg       480
     aaaatcgtta ttaaataaat taatcttact aatcttacca aactaaaata actactctga       540
     ggtttattat accaactctt cgtgaaccta actattaatt atctaattgg ttattgctaa       600
     taaacaatta gatcttataa aactaaaggt acaactagta gacaaattac tgcgccgacc       660
     ctgtgcaaat aagaattatg ttttattaaa taagaattgc attttattaa ttaactcatt       720
     attctattaa gttttaaaag atattgcacc agccttaaac aataaaagtc attgttataa       780
     tcaatctaac tatgaaacat tgaaatctta taaaacttta tccttttctg acgtaaaagg       840
     tctcactcaa aataaatctt gattagctct atggtctatg aatgcaatta tcacagatat       900
     aattaattaa ataacaatca cttttactat actatcctgc gaatcttata ttaatactga       960
     aactctacta taagttaaga acaaatttta aggcttctgc aaaatattcg acaaggcata      1020
     taaaattgtt aaggcgcata caattgtgaa tattaattaa ggataatttt aatcggccga      1080
     aacgtaatta ataatatgta tcggcacata ttgcttataa atcggcatta ctcttgaagc      1140
     ctgagaaata gtaactattt gagaaatcat ccgcgccaat ttgaaacatg gtcaatccca      1200
     aaatcatatt gaagcagatt ccattaataa gactcgagag aattaaataa tattttctat      1260
     taaaaggctt ccaagaacaa gatgctgcac cgcgacaggt gatgcaatcg atgatacata      1320
     ctttaacatt gaaaaatctg acatcgagac tgtttagact atctgataac tttgatatcg      1380
     atatgccgcc gatttcaccc tactcatcta tgcatcggaa ctagggcaac cgatgcaggc      1440
     gcgggggcgg gtaattaata tgcattataa tataaaagac agtaccttat cccggcgcga      1500
     cactctccag tatcgttaca gtaacatctc cgtaacagtt tcaagtaatc gcgatatttc      1560
     ggaaaagaat ttcggtgata gttcggaatt ccacaaggag caaggttccg gcgatctgtc      1620
     ggaatccgaa aaagggaaaa caagatctta gattgtggcc cttgcggacc cagagtcatc      1680
     cgtaagtacc agcagtctca tttaaattaa aagttattat tgttagtgtg actttatatt      1740
     gtcttgcgaa tttattgcgt gaacctcata tgtgattata tatatatata tatgtgtaga      1800
     acttatatct cagtgattga tcaagttatc tgtgcgaatc agaaataatc ttaaattttg      1860
     tgaagttcag aacctttcaa ctaaaagata gtaattaatc atgcccagct tgaatttaac      1920
     aacaaaacta ttaaggtatg attaattaca caccgtctag aatattcaaa ttttgagagt      1980
     tagcaaaatt gacgactatt aagtgataca gtattattct gatatgaaca agagaaataa      2040
     tcaattctat acgatcttga tcgatcatac ccattgtgaa ttattatttc gtcgcacgca      2100
     cttgcgaact gtcttatcgt acgttcttgt gaatttcttg ttttgcccat tatttgtgaa      2160
     tctctatttc ttttgtagac gctgaacatt attattattc tgttatgcat tgaatatttt      2220
     agtggtctgt aaatcgtgaa ttattgctgg ttgtcttatt atactaacct tatcgagaag      2280
     acgaacaatg atgatgaatt aattattact cgtgcgcgat acctcgtaaa attattaatt      2340
     atcttgacga tactaaattt ctttgcgaat tattaattta gagaaccaat cattccggta      2400
     atattaaata ttgttgtaat ttatgatgtt gaataatttc tgttccagaa attattgtaa      2460
     ataattatgc taaacgtttt tatgaaatta ttactcatct cgttaatata ttatattgaa      2520
     tattttcgga atctaattgt tcaaataata ttgaatattt tccctaaatt agtacattaa      2580
     atatttcact gagtcattac tcgtcttatt aatatagaat attaaatatt ttcgtgcttt      2640
     ggtagctcga ccctatcttg aacttatcgt ttaattactc ttgcgaatct attattcctg      2700
     tagcatcgaa tttatccaaa ttattatacc caaaatattg ttaaaattat tgttacttaa      2760
     acaatatttc cctgcgaatt actagtatga taattatcta aaatttattg taactttata      2820
     gtacaattat tataaattgt ttaaccttat tgaataccat tacaaataat tattttgaat      2880
     aattcttgtg aacctcttaa tcttcatcaa attaaacgtt actctgattc tatttcgttg      2940
     aattattact accgaatgtc cccgtatatc accatttaga atatcattcc gaattcaaca      3000
     cattaatggc aacatcttta accattaatt attcaacatc ttttccgcat ccctgccatt      3060
     attcaacctg agtccctctt agtccccaat aaattcgtat tgcttgaatt ttcctgcaac      3120
     cttgtttgaa cgctctttat cgtccgacgt agataaacat acccaatagc catactattt      3180
     gtcttaaaga tttcgcaact gtggtagtaa cggaaaacag gccaacgtcc gaacgcgaga      3240
     caaaaagcct tgtgtccgtg gtctatgcag gtcctcaggt ttgcatgtgc tgagagaccc      3300
     cggtagaaac gcatccgcct ataaccgaat agttgcttgc ggcgagcgta gatcggcata      3360
     gacaaagttg tgaatccttt cttctgctaa tagtatgggc ttacgcgaat aataacaact      3420
     attaagagca agacataaaa gtccttccgt ctccttcccc tacaaaacac taaatcattc      3480
     aattttatct ctccttagga cagcaagctc atctatcatc ctaactttag tcaagacagg      3540
     gtaaggtttc gactatcctt attcaaatcc aagtccattc acgaagttcc tcatttcttc      3600
     atttatgtag atgacgccac cagcagacta cacgcggagg aggcgctttt tccgccgcta      3660
     cgagcaatac gtgggggcgc gctcgcgcat tctacgccta atccgttcca tagatttaga      3720
     tgttccccac ttattcaatc taactcacca agccgctcaa attcaaatag cattaaactc      3780
     aagtacgaga gcctgcttcg ggttaacccc cgtggaggtg aatgagcgcc aggccaccaa      3840
     cccccagccc accccccaaa cctcagacgc cagcacctca acagacgacc ttcccttcat      3900
     cgattactcc ccccttgaag ccctttcacc cctaacgccg aatgacttcg acgacctaat      3960
     aggctccctt gtaaaccccg accctatcac ggaatagcat cgcacatgta cccccccccc      4020
     ccgcttttct tcattcccct tttattataa tttgttcccc ctttggtagt aaacaataaa      4080
     gaaagtagca gtataaaaca agagtaattg cctaaaagtc attctattcg cctacgcact      4140
     aatcctccta taccgatcct agctctcgac atcccgaggt attgccggcc cagcaggtag      4200
     cctcaaaagc atagagagcg ccactatttt cagcgactta ggtacgccgg aagtaggaag      4260
     gtccgtcctc cgggacgtga ca                                               4282
//
ID   Gypsy-24_MSe-I repbase;    DNA;    INV; 6464 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-6464
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 901-901 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           508..2805
FT                 /product="Gypsy-24_MSe-I_1p"
FT                 /note="retropepsin."
FT                 /translation="MCEFQAMSDQNRLRTPRSRQLTTPPRDFDRQRRGEQA
FT                 SRSRTRCSRSRYRSRGKKTRSRSHSRNRSRSTPRDRRLHEHRVRPCSRLHD
FT                 QERELSEKRKRLGTLEEEIRHRRTHTATPKPSGSGLNQRGMSKVNSNQIDT
FT                 SAVNESNNCKKRKVEPSELFEEFLNILKERPRSRETFPILNNVIPEYNPLS
FT                 KEQTINIWLDKVDECAEIYSWSETQTIHYALPKLSGHAKTWYQGLPSIKHS
FT                 WSEWKTMLKESFPATENYAELLTEMLNRRARPGESLELYYFAKINLLNRCK
FT                 IFGKQAVDCLIYGIDDRGVRVGAQAAKFEKPEDVHEFFKTIKSNAKEQFDD
FT                 KRYNSRDSRLSNKTLTTSVSGKTYNKPKPITCFNCQETGHPSFRCPKPLVK
FT                 CTKCNLMGHVSTNCTKIRESNIPTKDKNVFKVSFHDDPNDKYKMVININGN
FT                 PISCLVDLGSEATLIRESVARNLGLKWNTVSGPFLRGLGNVPYLPVGSTRV
FT                 DIEVQRILEKDVEVFIVDDPLISYDLLLGHSFTERPDLLIIKTTTDLKFER
FT                 ANIADQLRVPLLSLNETTINIGSIECVPVKSVSDLSGNIYVNGSVRGNLNN
FT                 EYYLLPGEYNIMNGSCSLLIYNIGPKSVRFEKDTLITRARFLGSTKYVFRV
FT                 SNHVDTSESFNNNINFGIQLTESQREQCRALLTDYKCCFSSGMHDLGFTNA
FT                 TEMEICLKDNTPVVYRPYRLPYSDRKLVKNMIDEMLAFWNYTGVEFPIRKS
FT                 NCTSTKEVWGKTTLR"
FT   CDS           2705..5239
FT                 /product="Gypsy-24_MSe-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="TKCWRFGIIRESNSPYASPIVLVQKKSGEKRLCVDYR
FT                 TLNNRTKRDHYPLPRIEDLLDQLSGHSLFTSLDLASGYHQISIAEESREMT
FT                 AFVTPDGQYEYNRMPFGLANAPAIFQRTMHKILNKSKAGYVIIYMDDILIP
FT                 SKTFDEGLDRLREVLKILKEAGLTLKMAKCKFFQEKIDFLGFEIDSDGIRP
FT                 GALKIKAVSGFPTPRNQHEVRRFIGLASFFRRFVKGFASIVRPLTNLLKKD
FT                 VPWKWEPDEANAFEIIKKLLISRPILALYDHSAHTQVHTDASKFGVAGILM
FT                 QRKYDNPWRPVAYFSRQTTIDEMKLHSFELETLAVVSTLNKFRVYLIGIKF
FT                 TIVTDCNALRSTFTKRDLVPRISRWWIQFLEFDCDIEYRPGEKMAHVDALS
FT                 RGPIEDASPEPIRILDILTVNSEDWIATVQSSDDEVRRIKEILEDPETPKI
FT                 AAVNREYKIKNGRVFRILKDDSLRWLVPRGVRWQVLKSNHDDVGHFGFEKT
FT                 LQRVQSLFWFAKMRKFIKKYVGACLECAHHKLPSGAKEGLLHPIPKIEIPF
FT                 HTLHADHLGPFPRTKRGNTYILVIVDSFTKYVSLNPVRSTKTKQSIKAFKT
FT                 LFSYFGSPARLITDRGTSFTSNKFKTFINSIGTKHILNSVATPRANGQVER
FT                 YNRTILASLGSMSHGRDKNIWDELLPDVQLGINTSVHEITQKTPTELLFGR
FT                 KVLNPAQGILNNLVDDVGGDSNNKTIHDMRSKAGELIRKNQEINKNRYDKH
FT                 RKQGKKYDEGDLVRIMRAIVTAPGQSKKLEAKCQGPYRIKKVLPNDRYVVE
FT                 DTPLTRKGQKYESVIASDKIFPWLSYDAPACSSNETSDISDND"
XX
SQ   Sequence 6464 BP; 2101 A; 1181 C; 1385 G; 1796 T; 1 other;
     actcagaagt gggataattg cgaaaacaaa tagtttttgc attatgaccc acacgccaaa        60
     gaaaaaaata taataatatt aatttactgg cttcttttct tcttcaataa gtgagtatac       120
     ataaaacaat gataagtggt ttacataata tttgtaagca atttaatgca gcttagatga       180
     taattaatga aatgaaaata agaattggtt actaataatc ctaatcagat tactttatta       240
     ttwtttttac cttccgttat gttcgaatac ccacatatat tcttacagtg aatgctttgt       300
     tgctaaaata tgttataaat gactgaacaa aatactaatg gatacaatgg aatgctacgc       360
     atataatata acattatgac attgcttatt ataatgtcag tggattcatt tatgttcttt       420
     taccttctac ctatcgtgat aacttgttta ttttagattt ttgttatcgt atacccaata       480
     caattgtaat tcgctttaaa taattgaatg tgtgagtttc aggcaatgag cgatcaaaac       540
     agactgagaa cacctagatc gaggcaattg actacgccgc ctcgtgactt cgatcgacag       600
     cggcgagggg agcaagcatc tcgcagtcgt acgcgctgca gtcgtagccg ctaccgatca       660
     agaggaaaga agacacggag ccgcagccat agccgcaacc gcagccgtag cactccacgt       720
     gatcgtcgcc tccatgaaca tcgtgtccgc ccgtgtagca ggctacatga tcaggaacga       780
     gaattatcgg aaaaaagaaa acgtctcggg acattggaag aagagattcg tcaccgacgt       840
     actcacacgg ctacacccaa gccatcgggc tcaggtttga accagcgagg tatgtctaag       900
     gttaattcta atcaaattga tacgagtgcg gtcaatgagt caaataattg taagaaacga       960
     aaagtcgagc cttctgaatt atttgaggag tttttgaaca ttttaaagga gcggccaagg      1020
     agtcgtgaaa catttcctat tcttaataac gtaataccag aatacaatcc gttatctaaa      1080
     gaacaaacta ttaatatatg gcttgacaag gtagatgaat gtgccgaaat atatagttgg      1140
     agtgaaacac agacaattca ctatgccctg cctaaacttt ctggacatgc taagacttgg      1200
     taccagggat tgccttcgat taagcactca tggagcgaat ggaaaacgat gctgaaggaa      1260
     tctttcccag caacagaaaa ttacgccgag cttttgacag aaatgcttaa tcgaagggca      1320
     cgccctggag agtctttaga gttatactat tttgccaaga taaatctctt aaaccgctgt      1380
     aaaatattcg gaaagcaagc tgtagattgc ttaatatatg ggatagacga taggggtgtt      1440
     cgagtaggtg ctcaagcggc caagttcgaa aaaccggagg atgttcacga attctttaaa      1500
     actattaaaa gtaatgctaa ggaacagttc gatgataaaa gatataatag ccgagattca      1560
     cgcttatcaa acaaaacttt aacaactagc gtttcaggca aaacttataa caaaccaaag      1620
     ccaatcacat gttttaattg tcaggaaaca ggacacccaa gctttaggtg tccgaaacct      1680
     ttagtcaagt gcacgaaatg caatcttatg ggccacgtgt ctactaattg cacgaaaata      1740
     agggaatcta acattcctac aaaggataaa aatgttttta aggtttcatt tcacgacgac      1800
     cctaatgaca agtataagat ggtaataaat attaacggca atccgatttc ctgtttagta      1860
     gatttaggta gtgaggcgac cttgatacgc gaaagcgttg caaggaactt aggtttaaaa      1920
     tggaatactg tcagtggacc gtttctaagg ggactaggca atgtgcccta tttgcctgtg      1980
     ggtagtacca gagttgatat agaggttcaa agaattctgg agaaggatgt agaagtattt      2040
     atagttgacg acccattaat tagttatgac ttattacttg ggcacagctt tactgaacga      2100
     cctgatttgc tgattattaa aacaacaact gatttgaagt ttgaacgggc taacattgcc      2160
     gaccagctta gggtaccact tttatcatta aatgagacga ccattaatat aggcagcatt      2220
     gaatgtgtcc cagttaaatc tgtgagcgac ttgagtggaa atatttatgt aaacggatca      2280
     gttagaggca atctaaacaa tgaatactat ctattgcctg gggaatacaa tattatgaat      2340
     ggttcatgtt ctctactaat ttataatatt ggtcctaaat ctgtaaggtt cgagaaggat      2400
     actttaatta ctcgggcacg ttttttagga tctaccaaat atgtctttag agtatcaaat      2460
     catgtagata cttcggagag ctttaataat aatattaatt ttggtataca attaacggaa      2520
     tctcaaaggg aacaatgtag ggctttgctc actgattata agtgctgttt ttctagtggt      2580
     atgcatgatt taggcttcac aaacgcaaca gaaatggaaa tttgtcttaa agataatacc      2640
     ccagtcgtat ataggcctta ccgtctccct tactctgacc gaaaattagt caagaatatg      2700
     atagacgaaa tgttggcgtt ttggaattat acgggagtcg aattccccat acgcaagtcc      2760
     aattgtacta gtacaaaaga agtctgggga aaaacgactt tgcgttgact accgcaccct      2820
     taataatcgc acaaaaagag atcattatcc cctgcctcga atagaggatc tactagatca      2880
     attatcaggg cactccttat ttacatcatt agacttagct tccggatatc accaaatatc      2940
     catagcggag gagtctcgtg aaatgactgc attcgtgacg cccgatgggc agtacgaata      3000
     taatcgtatg cctttcgggt tggcaaatgc tccagcgata tttcagcgga caatgcacaa      3060
     aattcttaac aagtccaaag ccgggtatgt catcatatat atggacgata ttttgatacc      3120
     gtcaaaaaca tttgacgagg gcttagaccg gttgagagaa gtgctaaaaa ttttaaagga      3180
     agcggggctc accttaaaga tggctaaatg taagttcttt caagaaaaaa tagatttcct      3240
     aggctttgaa atcgatagtg atggcataag accaggggcc ctgaagatta aagcagtttc      3300
     agggttccct acgccacgta atcaacatga agttagaagg ttcatcggac tagccagctt      3360
     ctttaggcga tttgttaagg ggttcgcatc aattgtgcga cccttgacaa atcttctgaa      3420
     gaaagatgtg ccctggaaat gggaaccaga tgaagccaat gcctttgaaa ttattaaaaa      3480
     gctcttaatt agtagaccta ttttagcact ttacgaccat agtgcacaca cacaggtgca      3540
     tacagatgca agcaaatttg gagtagccgg aatcttaatg caacgaaaat atgacaaccc      3600
     ttggcgccct gtggcatact ttagtcgtca aactaccatt gacgagatga agttacattc      3660
     attcgaactg gaaacattgg cagttgtcag tacattaaat aaattccgtg tttaccttat      3720
     cggaattaaa tttacaattg tcaccgactg taatgcattg cgctccacgt tcacaaaaag      3780
     ggacttagtg ccaagaatat cacgatggtg gattcaattc ctagagttcg actgcgatat      3840
     cgagtatcgt cctggtgaga agatggctca cgtggacgcc ctcagtagag gtccaattga      3900
     ggacgcatct ccagaaccga tacgtatact cgatatcttg acggtgaact ccgaagattg      3960
     gatcgctacc gtacagtcct ctgacgatga ggtgaggcgc attaaagaaa ttctagagga      4020
     tcctgaaact ccaaaaatag cggcagtcaa cagggaatat aagattaaga atggacgagt      4080
     ttttcgcatt ctcaaggatg attcgctaag atggttggta ccacggggag ttcgttggca      4140
     ggtacttaaa tcaaaccatg atgacgttgg ccattttggt tttgagaaga ccctgcaacg      4200
     agtacaatca ttattttggt tcgcaaagat gcgcaaattc ataaaaaaat acgttggagc      4260
     atgtcttgag tgcgctcatc ataagctacc ctcaggggca aaggagggtc tacttcaccc      4320
     gattccgaaa attgaaatcc cgtttcacac attacacgcg gatcacctcg gtccatttcc      4380
     tcgtactaaa cgcggaaaca catatatatt ggttatcgtc gactcgttca cgaaatacgt      4440
     gagcttaaac cccgtgcgca gtactaaaac aaaacagagt attaaagctt tcaaaaccct      4500
     atttagttat tttggtagtc ctgctcgtct tataactgat aggggaacta gttttaccag      4560
     caacaaattc aaaaccttta ttaattctat tggcactaaa catattctta attctgtggc      4620
     tacaccacgt gctaacggcc aagtcgagcg gtacaaccgc acaattttgg cctcccttgg      4680
     ttcaatgtcc cacggaaggg ataaaaatat atgggacgaa ctattaccgg atgtgcaatt      4740
     aggcataaac acctcggtcc acgagattac tcagaaaacc ccaacggaac tgctatttgg      4800
     taggaaagtc ttaaatccag cacagggcat actaaataac ttagtcgatg acgtgggggg      4860
     cgatagtaat aataaaacaa tacatgatat gagatctaaa gctggtgaat taattaggaa      4920
     aaatcaggaa attaataaaa ataggtacga taaacataga aaacagggta agaagtatga      4980
     cgaaggtgac ttggtacgaa taatgagagc catagttaca gcccctgggc aatcgaaaaa      5040
     gttagaggca aaatgtcagg gaccttatag aattaagaag gttttaccaa atgatcgcta      5100
     cgttgtagaa gacactcctt taactaggaa gggacagaag tacgagagcg taattgccag      5160
     cgataaaata ttcccgtggt taagctatga tgctccagct tgctcttcga acgaaactag      5220
     cgatatcagt gataatgatt agtatgaatt cacgttaata cacaactaat tattgttatt      5280
     aaatcatgga ttataaatat atattacaaa aataatactt agacagtgat tataatttat      5340
     atacctacat agaactaagt tacaattggg ataatggaat tatttaatgt aatacatcga      5400
     agtcagttcg tgaagtcaat acagcaaata atataaataa atagcattat taagactaaa      5460
     actgagcata ttaatattta ttgttgaggc agtttacctt tgagtttatg agtgacagat      5520
     aaacttatta tacatagacg aaaagtatta ttatttaagt atgtaagcac gatttaataa      5580
     gcaatatcga tagagaactt agatgaataa ttttgaatat ttcaataaaa aaaaaataat      5640
     aataattaaa aggcgtactt taggcattaa tggcattccg attcgcgaac tagagactag      5700
     cgaggatgtc gtgtagcggg caagagaggc acttctgtat acgacccagg agtgttacgt      5760
     agcgggcacg tgataagtga tttgtcgccc aagagtgtta cgtagcgggc atgagaggca      5820
     tatgaacttg ccgcccagga gtgttacgta gcgggcatga gagttacacg aatcttatgc      5880
     ccatagtgtt acgtagcggg cgagaggcat atgaacttgc cgcccaggag tgttacgtag      5940
     cgggcatgag agttacacga atcttatgcc catgagtgtt acgtagcggg catgagaggc      6000
     atatgaactt gccgcccagg agtgttacgt agcgggtatg agagttacac gaatcttatg      6060
     cccatgagtg ttacgtagcg ggcatgagag gcatatgaac ttgccgccca ggagtgttac      6120
     gtagcgggca tgagaggtgc atgaatctac cgcccaggag tgttgcgtag cgggctttaa      6180
     aaggtatacg aacgtgccgc ccatgagtgt tgcgcgacat cgcagttgtt gtctgacaag      6240
     agatgaaaga agtaatcctt gttcagcact actataatta agtagtgata caggtttaaa      6300
     ttgttagctt tattatactg tagggtctct gtgattatgt gttagattat aattagctat      6360
     tataatcaca tttattttta tttttctttg taatatgttt tgttgttgta ccttaaggct      6420
     actactccct aaacgaggga ctcgttttgc gaaggatggc cgac                       6464
//
ID   Gypsy-24_MSe-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 950-950 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 282 BP; 75 A; 54 C; 57 G; 96 T; 0 other;
     tgtaacacgg tgtcttaata taaatacaaa taggtggcac aacccttgtc gatatccgtc        60
     gttcgaccct atcgatcggc gatatcgaca atagcagtga caccactagt tattatgcgt       120
     ggtccgctca ctttccgatc atccttcgtt gggcgcctac ctgtgtaagt atgaagtgac       180
     aaactgttgt taataattgt gagctatgat tttaagtgta atatattaat tatgagtgga       240
     tataatgttt gattttactg cattcctttc tgagtcgtta ca                          282
//
ID   Gypsy-24_OrIn-I repbase;    DNA;    INV; 4257 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4257
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1565-1565 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..1152
FT                 /product="Gypsy-24_OrIn-I_1p"
FT                 /translation="MGGNKKLLYVHVIKVGDEQFEVAGLSEDKKTWFQLPA
FT                 DEMNLDLHEELAENTVIKSTITAIKALNGYRKVRIKLDSVLRNIYFDEAGN
FT                 LAFNDLPLEEVSDHETFQTDKNIDYAERIKELERLLIDKEPKLDQVEKRFI
FT                 LTKFDRKQNVSAKEWMSRFEGECDRNQIASESKKIEAMRFFVEGSPKDWYE
FT                 SNLQKMGLKDWALWKHSFFSIFEDNGWSTVRKAFAYKYLSGSVIDYALAKE
FT                 RLVLEVYPDGLELARVHMIVLGLPTEVQDVLNRREVITIERLFCELTKLDE
FT                 SFSKMKKKDYPTNQSKKPAQEADINGNQNKKPCYICTTLGFPNRYHSPSDC
FT                 RNKGKTNLKSNLAECSEEDKSILNIISENCNAREN"
FT   CDS           1119..4256
FT                 /product="Gypsy-24_OrIn-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="YHFGKLQRPGKLNQLLRLDVVINDTLKIKAIYDSGAN
FT                 VSVLNQKISDIFKTDLFEHGHTIKTLGGFSFATTRATVKLKIGDISDYLDV
FT                 YVVSKKDFAYDLLLGLDAIQKFCLIQDENLNISQKANANQRIVKIDNINKI
FT                 CRNSDTIQKMVQTGCRIGTSKMAIDIPKNLIDDNDIQEKIAHVEDQRQKDE
FT                 LFNLLTTYRHTFASDKFDVGKAKSKEAEIRLIRDEYVNSRPYKCSPVDEEE
FT                 IKTQVKKLLQADLIQESESPFAAPVTLAFKKEDGKRTRLCIDFRKLNKLIV
FT                 PDCQPFPRIQDIIDRVANCKYFTTLDINSAFWCVQLKKEDREKSAFVTSSG
FT                 KFEFKVLPFGLKSSPAIFQRILSNIIRRNDLDDFCVNYIDDILIFSKSWDE
FT                 HMQHMEKFLWAMADEGFKLKLSKCSFCVKSVKYLGHVLSENTVSPAYENLI
FT                 AIKNLKRPTDKSGVRSILGTINFYSKYIQHSAIKFEPLHRLLRKEVKFIWS
FT                 EECESCFQSIKDYLCSAPILSIYDPAKPVVIETDASYQGIGASLKQPHEDG
FT                 LLHPVAYFSRKLSAAEKKMEVIHLECRAIKDAIKHWQFYLIGKEFVVYSDH
FT                 KPLENLRTKARTDERLGDLIHYLSQFWFKIIYKPGKDNILADLLSRNPVME
FT                 YFEEEDAIKTVNMVDVLEILEDQKENKDELRSDKKLEFRGGIYYRKWRNKS
FT                 RVCISRNLGKQIVNRVHLDYGHIGSSQMIATIRPHYYFHGLDKIIKEYCKS
FT                 CTVCLENKMRRGKAIGLLSRLGPATRPFEIMSIDTVGGFGGNRSTKRYMHI
FT                 LIDHFSRYVWISTSSTQTACDFVKLVDSLDQKDQIMMLLADQYTGLHSDRF
FT                 KSYLGRRGIQLIFTSTDCASSNGLNERVNQTLVNRIRCKMNTDRKRSWATI
FT                 AQECVKQYNMTVHGSTGFAPEYLMFGCTKKISPFMDPSSSFGEDRQRALFN
FT                 SNRSFEANKARVDKTRSEHVFRPGDLVYVENGSRLNRNKLDPVRVGPFKII
FT                 RRISSTFYEVLTARKRKTSNLFHSSKLTPYATEQRSSGGE"
XX
SQ   Sequence 4257 BP; 1393 A; 701 C; 939 G; 1224 T; 0 other;
     aattaaatta ctcgtacgat gggtggcaac aagaagttgc tttacgtcca cgtgattaag        60
     gtaggagacg agcagttcga ggtggcagga ttgtccgaag ataagaaaac atggtttcaa       120
     ctgcctgcag atgaaatgaa tttggatttg catgaagagc ttgccgaaaa tacggtcata       180
     aaatcgacaa tcacggccat aaaagccctc aatgggtacc ggaaggtgcg tattaaactt       240
     gattcggttt taaggaatat atattttgat gaggccggaa atttggcttt taacgatctt       300
     ccgttggaag aagtgtctga ccatgagacg tttcagactg ataaaaacat tgattatgct       360
     gagcgaatta aagagctgga acgtctgctc attgataaag aacctaagct ggaccaagtt       420
     gaaaagaggt ttattcttac caaatttgat aggaaacaga atgtttcggc taaggaatgg       480
     atgtcgagat ttgaaggaga atgcgacagg aaccagattg cctccgagtc gaagaaaatt       540
     gaagcgatgc gcttctttgt cgaaggatca ccaaaggatt ggtatgaatc taatttacaa       600
     aagatgggat taaaagattg ggcactatgg aaacattcct ttttttcgat ttttgaagac       660
     aatggttggt cgacggtccg aaaggcattc gcatataaat atttatcagg atctgttatc       720
     gattatgcat tagccaagga aaggttggtt ttagaagttt atcctgatgg tttagagttg       780
     gccagagttc atatgattgt actgggtcta cccacagagg tacaagatgt actgaaccgg       840
     cgagaagtca ttacaattga aaggttgttt tgtgagctga ctaagcttga tgaatcattt       900
     tctaaaatga agaagaagga ttatccgact aaccagagta agaaaccggc tcaagaggct       960
     gatataaatg gaaaccaaaa taagaaacca tgctacattt gtacaacctt aggttttccc      1020
     aataggtacc atagtccatc ggattgtagg aacaaaggta aaaccaactt aaagagcaat      1080
     ttagccgaat gttctgagga ggacaaatca atccttaata tcatttcgga aaactgcaac      1140
     gcccgggaaa actaaatcag ctgttacgcc tagatgtcgt tataaatgat acattgaaga      1200
     tcaaagccat ctatgacagt ggcgcaaatg taagtgtttt aaatcagaaa atttctgata      1260
     tttttaagac tgatttattt gagcatggac atactataaa gacactaggc ggatttagtt      1320
     ttgcaacgac ccgggctacc gttaaactta aaattggaga catctcagat tatttagacg      1380
     tatatgtcgt atcgaagaaa gattttgcat atgaccttct acttggtctt gatgctattc      1440
     agaagttctg tctgattcaa gatgaaaatt taaacatttc ccaaaaagca aatgctaatc      1500
     aaaggattgt taagattgat aatattaata aaatatgtcg aaatagtgat actattcaaa      1560
     agatggttca gactggatgt agaattggaa cttccaagat ggctatagat attccaaaga      1620
     atttaataga tgataacgat attcaagaga aaatagcgca tgttgaagat caacggcaga      1680
     aagatgaact ttttaatttg ttaacaactt atagacatac atttgctagt gataaatttg      1740
     atgttggaaa ggcaaagtct aaagaggcag aaattcgact gattcgagat gagtatgtca      1800
     attctcgccc ctacaaatgc tctccagttg atgaagagga aataaagacc caagttaaaa      1860
     aattattaca agctgactta attcaagagt ccgaatcacc ctttgcagct ccagtcacgc      1920
     tggctttcaa gaaagaggat gggaagagga ctaggctatg tatcgatttt agaaaattga      1980
     acaaattgat tgttcccgat tgtcaaccat ttccaaggat acaagatatt attgatcgag      2040
     ttgctaattg caagtacttt acaactctag atataaattc agccttttgg tgtgttcaat      2100
     tgaagaaaga agatagagaa aaatctgcgt ttgtgacatc gtccgggaaa tttgaattca      2160
     aagtactccc attcggactt aaatcttctc cggcgatttt tcaacgtatt ctgtctaaca      2220
     tcattcgtag aaatgatctg gatgattttt gtgtgaacta catagacgac attttgattt      2280
     tttcaaaatc ttgggatgaa cacatgcaac atatggaaaa atttctttgg gcgatggctg      2340
     atgaaggttt taaactaaaa ttatcaaaat gttcgttttg tgtcaagtcg gttaaatatt      2400
     tgggccatgt cctttctgaa aatacagttt ccccggctta tgagaatttg atagcaatca      2460
     agaacttaaa gcgaccgact gataaatcag gagtacgtag tattttaggc accataaatt      2520
     tttactctaa atatattcaa cacagtgcaa tcaaatttga accacttcat cgtttattac      2580
     gcaaagaggt gaaatttata tggtcggaag aatgtgaatc atgttttcaa tcaattaagg      2640
     actatctatg ttccgcgccg atcttgtcca tttacgatcc ggctaagcct gttgtgatcg      2700
     aaactgacgc aagttatcag ggcattgggg cctcattaaa gcagcctcat gaagatggtt      2760
     tactacatcc ggtcgcgtat ttttcgcgta agctgtcagc ggcggaaaaa aagatggagg      2820
     tgattcattt ggaatgtcgt gccataaagg atgccataaa acattggcaa ttttacttga      2880
     ttggaaagga gttcgttgtc tatagtgatc acaagccttt ggagaaccta agaacgaaag      2940
     cgcgtaccga tgaaaggctt ggagatctca ttcattattt gtcacaattt tggtttaaaa      3000
     ttatttataa gcctggaaaa gacaatattt tagcggattt gttatcgcgg aatccagtga      3060
     tggaatattt tgaagaggaa gacgcaatca agacagtgaa catggtggat gttttggaga      3120
     ttttagaaga tcagaaagag aataaggatg aattgagatc agataaaaaa ctggagtttc      3180
     gtggaggtat ttattatagg aagtggcgaa ataaatctag agtctgcatc tcccgaaatt      3240
     tggggaaaca gatagtcaat agagtgcatt tggattacgg gcatatagga tcgtctcaaa      3300
     tgattgccac tattcgacca cattattatt tccatggttt ggacaaaata ataaaagaat      3360
     attgcaaaag ttgcacagta tgtctggaaa ataaaatgag acgaggaaaa gcgattggac      3420
     tactatcccg tctcggccct gctacgcgtc catttgaaat catgtcaata gatacagttg      3480
     gaggttttgg tggtaatcgg tcgacaaaac gatatatgca catactaatt gatcatttta      3540
     gtagatatgt ttggatttcg acttcctcaa cacaaacggc gtgtgatttc gtcaaattag      3600
     ttgactcgtt ggatcagaaa gatcaaataa tgatgcttct agcggaccag tataccggac      3660
     tgcattccga tcgttttaaa tcttacttag gcagaagagg aattcaacta atatttactt      3720
     caacagactg tgcaagctct aacggtctga acgagagggt aaaccaaaca ttggtgaatc      3780
     gtattagatg caaaatgaat accgatagaa aaagatcttg ggccacgata gcccaagaat      3840
     gtgtaaagca atacaatatg accgtacatg gttcaacggg atttgccccg gaatatttga      3900
     tgttcggatg tacgaagaaa atatctccgt tcatggatcc ctcgagttct tttggggagg      3960
     accgacaacg ggcacttttt aactcgaatc gctcttttga agcaaataaa gccagggtcg      4020
     acaagacgag aagtgaacac gtttttcgtc caggggatct cgtctatgtt gaaaatggaa      4080
     gccgtctcaa cagaaataag ttggatcctg ttcgggttgg gccattcaag ataattcgac      4140
     gcatttcgtc aacgttttac gaagtattga cggctcgtaa gcggaagact tctaacttgt      4200
     ttcattcttc caagcttact ccgtatgcta ctgagcaacg gtcttcaggg ggggagg         4257
//
ID   Gypsy-24_OrIn-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-254
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1531-1531 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 254 BP; 76 A; 31 C; 46 G; 101 T; 0 other;
     tgtaagagtg tgtccctctt attatagttg tttgtagttc cgttagggga gccaccccta        60
     ttttataaac gcgggtgaaa cgactgataa cgtgataaag attgtgtttc aactttcacg       120
     attgatattc aattgtagaa tctacgtgta atttaattta tctgtttagg tatttatttt       180
     attacattgt aagttttata ctaatttgta tctgtttaga tgaataaatc acgtatttaa       240
     agaaaagagt taca                                                         254
//
ID   Gypsy-24_PBa-I repbase;    DNA;    INV; 7703 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7703
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 719-719 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1680..5603
FT                 /product="Gypsy-24_PBa-I_1p"
FT                 /translation="MVDTGAAPNLIKKRSLHPDTPIARDDTIHLTGITSGQ
FT                 IETLGSVEIQFKGHKINLHTVPDNFPIAQEGILGSDFLRDDATIDFGRETV
FT                 EWRGIKLPFAHPGKLHVPARSRAAFYVNVSNTETEVGYLPRLSVGEGIFLG
FT                 EAIVTNREGKAYAQIVNTTESDREIAVPTVQLEEIELIAPKPAQKRRAVNC
FT                 VTTSRSEEAPRETDRAALVRDLLRLDHLSAIEAEHVNALVEDNADLFQLPA
FT                 DPLGHTNATSHTIATTDNSPVNVKQYRFPPMHREEITKQVNKLLEDNVIEH
FT                 SNSPYNSPLWIVPKKPDSQGNRRWRMVIDFRALNEKTIGDAYPLPNIAEIL
FT                 DQLGSAKYFSVFDLASGFHQIPMHESDAPKTAFSTPFGHYHFKRMPFGLKN
FT                 APATFQRLMDQVLTGLQGTEMFVYLDDIVIYASSLREHEIKFKRLADRLRN
FT                 ARLRLQPDKCEFLRREVTYLGHVISEDGVKPDPKKIHAVKNFPRPRTAKNI
FT                 KQFLGLAGYYRRFIPNFSKTAKPLTDLLKKEVRFQWEDPQERAFETLRAAL
FT                 CSEPLLQYPDFTRPFVVTTDASKYAIGGILSQGPLGKDLPIAYASRLLSPP
FT                 EQNYSTIEKELLGIVYCVNYFRPYLYGRKFQLVTDHKPLTWLHSVKDPTSR
FT                 LVRWRLKLAEHEYEVIYKAGKMNTNADALSRNPVQALPLTATREXPIEISE
FT                 AESDESLFNGPTPRNPRTSAAVDSKESGVIASNSSDEEDSDSDCPTENDFE
FT                 ADSDSDADERVSDTTGSEGLFDGDSVPYQTHHLRLKEIRDSFANRRDNLVV
FT                 FVDAQGKPCDLGSRILNKQGLLPEPCDVMGRGKTRRVGNKYVIALPIERNV
FT                 SSLTVLEGVREALKSLADIIQELNLRTISVCKGDVNNVSFAKIDRALRTAL
FT                 WDQDLEVSVCTNEIVVPPAGDRTRIIEEYHASAVGGHKGVTKTLARIKERY
FT                 SWPGIKEQIGRYIASCQSCQLNKLKRVKVRQPMILTDTPDRAFDKVSMDIM
FT                 GPLPTTRSGNAYILTIQDLLTKHSTAVPLKGISAIDVADAFVNEYICAHGA
FT                 PKAILTDQGTHFINSLMRNIARKFRIKQFKTTAYRPQSNGSVERSHHVLWE
FT                 YLKQFVNKNKNWDEILKLASFSYNTSVHEGTRFTPHELVYGSLARIPTSES
FT                 GEIEENNESYAGYYADLSAKLCEAQTIAHRNLNAAKTRSKKYYDQRANACT
FT                 FREGERVYLLKEPRKDKLSPQYTGPHTIVNVLDNNNVRLELSSGKLRTVHA
FT                 DKLKKVGSRSPTTRHSPPSSPEPEESEGHRRDSKTKSTNDPTWNYAD"
FT   CDS           5992..7545
FT                 /product="Gypsy-24_PBa-I_2p"
FT                 /translation="MAGQTHTDGRCAGTQYSDGFGTWENVVVQATLRVVLR
FT                 SFDASYKRSTGAIILPTGTRCQEQHGSCIDYDGTETFWTVAPTDSCHFDQY
FT                 DVLYEGIATKLSPRENQTTPIVYTVTTEETTFALAKTTEFNLCGYQLYRTE
FT                 HPKLIILETQKGKTFAARSQISVNNLDIFAYVNSKFVYVEKHVKHQLTRLY
FT                 HDIMEQKCALERQILQNALSLSAIAPDEMAYRVMKSPGYTAVTAGEVIHII
FT                 QCVPVTCKLRHTETCYNELPVTYKNTTYFLLPRTRILTRKGTHKSCNELLP
FT                 SMYKLNDVWYRLTTKPLESLPPPIIQPLSTPKWKYVSPDALATSGIYSTDD
FT                 LDRLRDHIMFPVEKPSMLNTIARGALGQDIPGGSISLVNLLDEETLDKIAE
FT                 SAGKRIWNGFITFGSASAGVLAIFVIARVIKLVIDTIIHGYALHSIYGWSI
FT                 HLLGAVWSSITNLLLHMGRPMTQHDAHSTERLMPPRREAGDESPPATAPGK
FT                 DDKDEHTRSYSELRKYLREDIV"
XX
SQ   Sequence 7703 BP; 2136 A; 2115 C; 1966 G; 1481 T; 5 other;
     tatttttggt gacagcggtg ggatgccgtt aatcgggaga gtcgaacatt tcggcatatc        60
     tcaccgacct acgccacttt tcgcatcgta acgttagtct catatgttac gcacgcctgt       120
     aaaagagaag gacggtaata tgaatacgcg tcaaaatcct aaaaagcctc ttaccgaaga       180
     ggagttagag cggattcgcg ccgcgcagga ggaacgcgcc gcgcagttag ccgccgaaac       240
     cgacgcgtta aacagagaaa gagagagaac ccgcgcggag aatgccgcga tgcagcgaga       300
     ccgcgccgac gtcgaggaga atcgggcggc tatgcgtgaa atgggcgaca tgctagcgtc       360
     gctgcgcgcc gagttacaca atatgcggcg tgagatggac acgcgccgcg acccgcccct       420
     gcgaagccct agcatcccgc cgggccagcc gttcggcgaa acctctccgc tgttcggaga       480
     ccacaacgac tcaaacatcg aggccccccg ggggggcccc cgcggtatcc aaaattacct       540
     atcgagaggc aaccgagtat gtgccaattt tcgatgggta caatatttca ttgtcgaagt       600
     ttctcggagc gtgtaggcaa gcccgcgata tattgccccc gcattacgaa aagcccctca       660
     cgcgactatt aatgaccaaa ttacgagggc atgctcattt ccgcggtcgc cgacgaacct       720
     tgcgatacgg tgactcaact ctctgacctg cttaatagtg ccttcgggtc ggtcaagagc       780
     gtagcccagt atcggggaga actaaccgcc gtgcaccttc gaccgaacga gcatatcctg       840
     gactatatag accgcgtcaa agagattagg tccgcgataa gagacgggga acgacgcgct       900
     cgcggtatct taaaccccgc tattacccaa gaaatagacg agattacagc gcagtgtttc       960
     tgcgaggggt tacccacgcc gtatcgtctg cagctgcggc cggagcacta ccacgcgccc      1020
     ttcgaagcat tcgcagctgc caaaataatc gcgaagcgcg atgaaattaa acggcaacgc      1080
     tacggtctgc ccgcgcggct aggacaaccg ccgccgcgac gaccgcccga caccccccga      1140
     cgctcacccg agccaaacgc atggcgcaac tcgcgttaca gaccggcgtc accgccggga      1200
     agacgacgca ctcacccccg cgctttgatg aatacagggg tcgagagcgg aactactcac      1260
     tgcgccccga atgcsccgga acgccgcgaa gaaacgcgat caacataccg ttatgagaac      1320
     cggaatgcgc ccgggccgag aaatggagaa gggccgcgtg actcagcacc gccgcggaat      1380
     gacaaatggt gccgatactg taaaaaccgc ggccacgaga ttgaggaatg ccgaaaacgg      1440
     caatataaca atagtcgaat caacgggccg ggaaacggtc gggatccgtc tcgcgggacg      1500
     gacgcggcgc gcgcggatcc cccgagaaac ccgcgtccgg taaatacggt gaatacagcg      1560
     agcacggtgg acacggccca cgaagaagcg tccgaatcgc tatcttgaat ctgtcggaac      1620
     catctcacgc cccgtcagtc ctgctatccg ctagcggttt agtgggaccg accaatttca      1680
     tggtcgacac gggagccgcg cctaacctca tcaagaaacg atccctacac ccagataccc      1740
     ccatcgcgag ggacgataca atccacctta cagggatcac gagtgggcaa atagagaccc      1800
     tagggtctgt agaaattcag ttcaaagggc ataaaataaa tctacacacc gttcctgata      1860
     acttccccat cgcacaggaa gggatcttag gatccgactt cctccgcgac gacgccacta      1920
     tcgatttcgg tcgtgaaacg gtcgagtggc ggggaattaa gctacctttt gcgcatccag      1980
     ggaagcttca cgtgcccgcg cgctcacggg ccgcctttta cgtgaatgtg tctaataccg      2040
     agactgaagt cggatacctc ccgcgactta gcgtcggaga ggggatcttc ttgggggaag      2100
     cgattgttac aaacagagaa ggaaaagcgt acgcgcaaat cgtaaacaca acagagtcag      2160
     accgcgaaat tgctgtcccc acagttcagt tagaagaaat cgaattaatc gcgccgaaac      2220
     ccgcgcagaa gcgccgcgcc gtcaactgcg tcactacgtc tcgatcagaa gaagcaccgc      2280
     gcgaaaccga tagggctgcc ttggtccgcg acttacttag attagaccac ctcagcgcca      2340
     tagaggcgga gcacgttaac gctctcgtgg aagataacgc cgaccttttt caactccccg      2400
     cagacccgct gggtcacacc aacgcaactt ctcacaccat cgcaacgacg gacaactccc      2460
     cggtgaatgt aaaacaatac agatttccgc cgatgcacag ggaagaaatt accaaacaag      2520
     taaataaact tttagaagat aatgttatcg agcattcgaa ctcgccgtac aattcccccc      2580
     tgtggatcgt gcccaaaaaa cccgactctc agggaaaccg gcgttggcgc atggtgatag      2640
     atttccgcgc gctaaacgaa aagacaatag gagacgcgta ccccctccct aatatagccg      2700
     aaatacttga ccagctgggg agcgctaaat actttagtgt cttcgacctc gcatcgggtt      2760
     ttcaccagat accgatgcat gagtcggacg cgccgaagac ggctttttcc acgcccttcg      2820
     ggcattacca ttttaagcgt atgccgttcg ggctgaagaa tgccccggcg acgttccagc      2880
     gactcatgga ccaggtgctg accggcctgc aaggaacgga aatgttcgtg tacttagacg      2940
     atatcgttat atacgccagc tccctgcgag agcacgaaat caaattcaag cgtttggccg      3000
     accgactgcg aaacgcgaga ctacgcctgc agccagacaa atgcgagttc ctccggaggg      3060
     aagtcacgta cttgggccac gtaattagcg aggacggggt aaaacccgat ccaaagaaaa      3120
     tacatgccgt gaaaaacttc ccgcgtccgc gcacggcaaa gaatattaaa cagtttttgg      3180
     gcctggccgg ttactatcgt aggtttattc caaatttctc aaaaactgct aagcctttaa      3240
     ccgacttgct gaaaaaggaa gtacgttttc aatgggaaga cccgcaggaa cgcgcattcg      3300
     aaacgctaag ggcggccctt tgctccgagc cattattgca ataccccgat tttacgaggc      3360
     ctttcgttgt aacaacagac gcttcgaaat acgccatcgg cggtatttta agtcagggac      3420
     cattaggcaa agatcttcct atagcctacg cttctcgact gttgagccca cccgagcaaa      3480
     actactcaac aatcgagaag gaactcttgg gcattgttta ttgcgtaaac tatttccgac      3540
     cgtatcttta cggtcgtaaa ttccagctgg tcaccgacca caagcctctg acgtggctac      3600
     attcggtcaa agacccgacg tcgcgcttgg tacgatggcg cctgaaactt gccgagcacg      3660
     agtatgaggt gatctataag gcgggcaaaa tgaatacaaa cgcggacgcg ctttcgcgaa      3720
     accccgtgca ggcgctaccc ctaacggcga ctcgagaamc accgatcgaa ataagcgaag      3780
     ccgagtccga cgaatcacta tttaatggcc ccacgccacg gaacccgcga acttccgccg      3840
     ccgtagatag taaggaatca ggagtaatcg ccagcaatag cagcgatgag gaagatagcg      3900
     acagcgattg cccgactgaa aacgattttg aagcagactc cgacagcgat gccgacgagc      3960
     gcgtgagcga cacgacggga agcgaaggtt tgttcgatgg tgatagcgtg ccataccaaa      4020
     cacatcacct taggttaaag gaaatcaggg atagcttcgc gaaccgcaga gacaatctag      4080
     tagtgtttgt cgacgcgcag ggaaaaccgt gcgacctggg atcgaggatc ctaaataaac      4140
     agggcctctt gcctgaaccc tgcgacgtta tggggcgcgg caagaccaga cgcgtaggca      4200
     ataaatatgt tatcgcgttg ccgatcgaga ggaacgtctc ctctcttacc gtcctcgagg      4260
     gcgtccgaga agcactaaag tcgctagcgg atataatcca ggagctgaat ctgcgsacga      4320
     tctcagtctg taagggcgac gttaataacg tgtcattcgc gaaaatagac agggcgctcc      4380
     gtaccgccct gtgggatcaa gacctggagg tatccgtctg tacaaatgaa atcgtggtac      4440
     cacccgcggg cgataggacc cggataatcg aggagtatca cgcgtcggct gtgggaggcc      4500
     ataagggcgt gacgaagacg ctcgcgcgaa ttaaagaaag gtactcctgg cccggaataa      4560
     aagagcaaat cggtcggtac atagcaagct gccagagttg ccagctgaat aaactcaaac      4620
     gggtaaaagt tagacagccc atgatactaa cagacacgcc agacagagca ttcgataaag      4680
     tatccatgga tatcatgggg ccgctcccca ctacgcgctc ggggaacgca tacatcctca      4740
     cgatacaaga tctcctgact aaacattcaa ccgccgttcc cctcaaaggc atctccgcta      4800
     tcgacgtcgc ggatgccttc gtaaacgagt acatttgcgc acatggtgcc cctaaagcaa      4860
     tccttacgga tcagggtaca cattttatta actcattgat gagaaatatc gcgcgaaaat      4920
     ttagaatcaa acaattcaaa actactgcgt accgaccaca atccaacggg tcagtcgaga      4980
     ggtcgcacca cgttctgtgg gaatacctca agcagtttgt caataaaaat aaaaactggg      5040
     atgaaatact aaaactagcc agtttctcgt ataataccag cgtgcacgaa ggtactcgtt      5100
     ttacacccca cgaattagtg tacgggagcc tcgcgcgcat acccactagc gagtccggag      5160
     agatcgagga aaacaatgag agttacgccg ggtattatgc cgacttgtcc gcgaagctct      5220
     gcgaagcaca aacgatcgcg catcgaaatc tcaatgctgc taaaactcgg tcgaagaaat      5280
     attacgatca gcgcgcgaat gcatgcactt tccgcgaggg cgagcgagtc tacctactca      5340
     aagagccccg gaaggataaa ttaagcccgc aatatacagg gccgcatact attgtaaatg      5400
     tactcgataa taataatgta aggctagaat taagttcagg taagctgcgc acagtacacg      5460
     cagacaaact gaagaaggtg gggagtcgga gccccaccac gcgtcattcc ccgccatcat      5520
     cgcccgaacc ggaggagagt gagggacatc ggcgcgacag taagacgaag tcaaccaacg      5580
     acccaacatg gaactacgcc gactaactat cttcttaatc ctgccgatct gccaagccct      5640
     gctgggctac gattgtggag gcagcggcct aaacatcact acactgtctc ttctggatat      5700
     tggaacgtgc aacgtagaaa gactagaacc agaaagcact gaaacmtata ttcaactaat      5760
     gcagtcttca gaktataaca gcgtcaccgc catccagtgc aggttagaga tcgaccgcac      5820
     tatctattac tgtggaatgc actcccacgt ctcgatcgtc tctgatggcc ataaggaata      5880
     cgtcaaagaa atcggacgcg aaaactgcca acgcatccac gacaccggga cgtcgggatc      5940
     gcgatcgtgg atcgcctgaa aataaacgcc acgaaccaca ggagcgttac catggccggc      6000
     cagactcaca ccgatgggcg ctgtgccgga actcaatatt cagatggatt tgggacttgg      6060
     gagaatgtgg tggtgcaagc cacgctgaga gtggttctcc gctcattcga cgcctcgtac      6120
     aagcgatcaa caggtgcaat catcctacca acaggaacgc ggtgccagga gcagcacggg      6180
     agctgcatcg attacgatgg gaccgagacc ttctggaccg tggcacccac agatagctgc      6240
     catttcgacc aatatgatgt actatacgag ggcatcgcca ccaagctatc tcccagggag      6300
     aaccagacga cgccaatcgt ctatacggta acaaccgaag agacgacctt cgcactagcg      6360
     aaaaccaccg agttcaacct ctgtggatat caactctatc gaacagagca tccaaagctg      6420
     attatattgg agacacaaaa ggggaagacg ttcgctgcca gatcacagat ctctgtcaat      6480
     aacctggata tatttgccta cgtgaactcg aagtttgttt acgtagaaaa acatgtgaag      6540
     catcagctca cccggctcta tcatgatatt atggagcaaa agtgcgcact ggagaggcag      6600
     atcctgcaga acgccttgtc cctctccgcg atagctcctg acgagatggc ctaccgagtg      6660
     atgaagtcgc ctgggtacac cgctgtgacc gccggtgagg tcatccatat cattcagtgc      6720
     gtgccagtga cctgtaagct gaggcacaca gagacatgct acaatgagct cccggttaca      6780
     tacaagaaca ctacgtattt cttgctgccc cgcactagga tacttacccg caagggtacg      6840
     cataagagct gcaacgaact attgcctagc atgtacaaat tgaatgacgt ctggtacagg      6900
     ctaaccacta agccattaga gtcactccca cctccaatta tacagccgct ctccacaccc      6960
     aagtggaagt atgtaagtcc ggacgcgctt gcgacgagcg ggatctactc cactgacgat      7020
     ctcgaccgcc taagggacca tattatgttc ccggttgaga aaccgtccat gttgaataca      7080
     atagcgcggg gagcgctggg gcaagacatc ccgggaggta gcatctcgct agtcaatcta      7140
     ctcgatgagg aaaccctcga caaaattgca gagagcgctg gaaagcgaat ctggaacggg      7200
     ttcataacct tcgggtccgc cagcgctgga gtcctagcga tattcgtaat agccagagta      7260
     atcaagctgg ttatagacac catcatccac ggatatgcgc tgcacagcat atacggttgg      7320
     agtatccatt tgttgggagc cgtttggtcc tcaattacca acctgttgtt gcacatgggc      7380
     aggccgatga ctcaacacga cgcacacagc accgagcgcc tcatgccgcc tcgacgagaa      7440
     gctggtgacg aatctccgcc agccaccgca ccaggaaagg acgacaagga tgagcacaca      7500
     cgttcctaca gtgagctgcg gaagtactta cgcgaggaca tagtatagag acaaataagt      7560
     gcgataacta cttaccagtg ctagcatata agacgaataa acataagtaa aacaattgta      7620
     gctcaaactt tcgcaaccta acctttagta cgacgcagga gaaacgcagg gcacctggcc      7680
     ctacatttct tcttaggggg gga                                              7703
//
ID   Gypsy-24_PBa-LTR repbase;    DNA;    INV; 2548 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2548
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 720-720 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2548 BP; 643 A; 665 C; 517 G; 722 T; 1 other;
     tgtaacgtcc ggagagccgc catatatttt ttccttcttt ttcttcctac cgcgcatgta        60
     gtatcgcctt aatataattc accgccgggc caacgaccga gaacgaccat tggctctcct       120
     gccgttccgc ctaacatggc gcgccccacc attattatgc tacatagatg taatattatt       180
     ttaaccgcct tcttcgataa ttataggcat taacatttaa taacatgtat tcgattatgc       240
     taaccatttt ccctagctat aaacaataat atttgttata atacaaaatg aaaagtttta       300
     taattatact ttaaatataa tgttccttaa acatacctaa acataatacc tgtattaata       360
     ataagatcat gttaatgaca cgatattaat aattaattgg cataagatat cawtactaca       420
     ataaagcccg catcactgct accgcgcatc atctcctgcc agccgcgttc tgattggccg       480
     accaatgcac gccatagaca tatacatcta gcctagctgc ataacccgtg ccacgccagc       540
     gccacgtgcg ttggcgtacc cacgccatcc gccatcttgc gccacagcgc cgccgcaggc       600
     cgagcgctgc aactgcccgc cgaaacaccg acactcttgt gcgcgccgtc gaacagttgc       660
     acatcgccac gaagcgtctt gctccgatct ctagtacgta attcaagttc aagttgttta       720
     ttcaatttct agttcgtagc cgttctattt ctagctcata ttccgctaca atttctagtt       780
     ctaaataagc gatcttgatt gtttatctcg tattagtgag taaagcttcg tgagtgtaac       840
     ctttagttaa ttgtttaaat atattagtat ttattgtatt aataataatt aactatataa       900
     tatattaaat tcgaatcgcc acgtgttcgc tctttcatac agttcatcac cgcgtctact       960
     aacggaagtg ttcgcgaggg cacgaggcga ctaggtgtta atagcaagtc caatattgat      1020
     taatcgatta attcataatt aaagcaagaa ttccgatcgt ttctgggggc aaggtgttgt      1080
     gcgtcatccg cacttaccac gaaggaaaca tcggacttcg agcacgtggt agctcctgca      1140
     ttccgacgcg acgccgaacc aatgcgtaat tggctcgcag ccgaatgtga tatcctaacc      1200
     ctaacttttt aattaaatat aatatatacc taaagcctct gtcgaatgcc taaggcacgg      1260
     aaaaatcgcg cggggcgcag taacgctata cgacatctcg aatacgacct tcatgtggcc      1320
     gcgattttcg atcacaacgc aatcatcggc gaggaggtaa ccttcgacgg ggagtacgag      1380
     ctcctggtgc acgaccgtct ctggggcgcc ctgcccgcgc agcccgcacc agccagcacc      1440
     caagaacccc gctcccagcc gcgaatctct ctccaagact atttgcagag agcttccaac      1500
     gaaaggtaag tagctaaatt gttaacaaat tattataaga tatatgtata cgcgtatatt      1560
     tctcgcgcta ttttccctgt tgcgtcagcc gaacgtgtcc gtgcaagttc aacgatcgct      1620
     tctacaaagg gaaagcctga ccggaagggt ttacgaccga cccctttgtt ttttttgggc      1680
     atagtttttg ccccgtccga cgacttcact cggaaaatgc actcttaaat gcttgtttca      1740
     aactttctag ctccgataat attccgtaat attattcaac gacatgcagg gacgcgtttt      1800
     accttcgcgg atactattaa ttaattagtg tgatgtgctt ccctcggtct gatgccaccc      1860
     gcggttcgcg cacgcatcca gccgccgtat tccaacatcg cgtcggttca gtgcgctgca      1920
     ttacttcctt cggttatcgc cgcgtaaata attcagctgc cgacaattat cctaatagcg      1980
     ccgagtttct ctgttatcgt tgtaaggaat taatacccga gggcaccctc tcttaccgct      2040
     tggaattaac tcattcattt caattcggat tcaccgggtc ccaagatttc tgcgagtgtt      2100
     gtcgtacccc gctttcgtta atccgcgaaa tcgagcactg cgacgcgtgt tccgaggttt      2160
     tcgttgttgc cctagaagta cttgaagaag agggagaggc tatcgaacac gtccgcgctc      2220
     gatattatct tgacgatact aacgctgctt cagacgtcat tgtctcgcgc cgactcacga      2280
     acttttccgt ctcgttgctt aaccgtgagg aataatagct agacgcgatc gcgctaatac      2340
     taagaattag attccctgct gctcaatcgc acgtttattc tagtgatcag ggattcgtac      2400
     gttaatactc cttaactctt ccgaaccgct gctggtgatt tgccgctcga ttgctggcag      2460
     cgtcgccgag aggcgagcgt attcccgcct ttgtccggtg ccacgtggtg atttgcttgg      2520
     caacatcgcc accgcccgcg acgtgaca                                         2548
//
ID   Gypsy-24_SI-I repbase;    DNA;    INV; 4055 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_SI_;
KW   Gypsy-24_SI-LTR; Gypsy-24_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4055
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 438-438 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3040-3510] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..3876
FT                 /product="Gypsy-24_SI-I_1p"
FT                 /translation="MNMETTNLPTFDPNAETGNVYQRWTRWLRAFKLFLVS
FT                 KKIEDDERKKAMLLHYGGFDLQDIFYAIPDAEEVEEGETAYTKAVQVLEAY
FT                 FKPKMNTTYERHIFRNLSQGTEETMVQYVSRLRQQAKNCNFEDADTEICGQ
FT                 IIEKCHSTKLRRRLLEKCEVKLDEVLEIAKTMEAVSLQTKGMEGEAVARIT
FT                 DKKKHVKTGATKTTDNVECYRCGYKGHKYTDEKCPARERTCSKCGKSGHFA
FT                 RVCKTRTETTGNSYRKSGQRKGVRRLDEKTEEDENEHAFSLRRKEIYAVDG
FT                 KCVNAAIGGVTLNLLVDSGASCNIIDEETWKWCKSRNIKCKSEKTDGKKIY
FT                 AYGQKKALDLLGEFHCDIEIENQKARATFLVLKGRGRALLGYETATKLGIL
FT                 RIGPEISNINDFETEQDPIFRGMGKLKDFQLTLPIDKTYTPIAQPVRRIPF
FT                 KLREEVEKQIKTLIAQDIIEKVEGPTEWVSPVVPIVKRSGEIRLCVDMRRA
FT                 NEAIIRERYPLPVLEDILNVVGGNNWFTTLDVKKAYHQIELEEESRKITTF
FT                 VTDSGLYRYKRLMFGISCAPEIFQRIIRSILKDCKGTINFMDDIIVCGKTR
FT                 EEHDERLEKVLETLKEKGITLNKSKCTFRKKEITFMGFKISGNGYQPLESK
FT                 VEAVEKFQIPKTAEEIRSFLGLVNFCAAFIPNLATISEPLRRLTRKGIKFL
FT                 WEKEQDRAFKILKRSLASAQTLGIFNINAKTRVIADASPVGLGCVLTQRDD
FT                 KNQWRIISYASRSLSDCERRYSQTEKEALALVFACERFYNWLYGIEFELVT
FT                 DHKALECIFAPRAKPNARIERWVLRLLPFKYKVIYEKGKSNIADVLSRLCG
FT                 KENRKKEFEEDVHYIRWVTTESVPKAMTLKEIAVASKEDKKIKEVKLALQT
FT                 DDWDALKNSRYKIIKEQLCIYNNVLLRNTRIIIPEALQRKTLMLAHEGHPG
FT                 IVAMKQRLRSKVWWEGIDKDAEKFVKSCKGCQLVQRPIEPPPVKRNQLPEK
FT                 AWETIAIDLMGPLPTGEYLLVTTDYYSRFVEVAILKRISAKEIQEELFELF
FT                 ARHGLPRTIVCDNGRQFTDEGLKDWLNSYGVKVAHVAPYWPQANGEVERQN
FT                 RSILKRLKIAYAQKKNWRNELLTFLMMYRSTPHSVTGVTPAELLFNRKLRT
FT                 KIPEIDNSSKFVEEEIRERDKWLKEKGKQYYDKANRAKECELGQGDRVLIR
FT                 APKENKLSPNFSPEEYKVIDRKGNSVTLESEEGRKYKRNLTQVRKVIDLES
FT                 EESENEEEEVVSKERKE"
XX
SQ   Sequence 4055 BP; 1590 A; 564 C; 994 G; 904 T; 3 other;
     ttggcgacga ggattgagtc taaaaggatt aagacttaga aaatgaatat ggaaacaaca        60
     aatctgccga cgttcgatcc gaatgcggag acgggaaacg tgtaccagag gtggacacgt       120
     tggttaagag cgttcaagct gtttttagtg agcaaaaaga tagaagacga cgagagaaaa       180
     aaagctatgt tgctacacta tggaggattt gacctgcagg acattttcta cgcaatacca       240
     gatgcggaag aagtcgagga aggggaaaca gcgtacacca aggccgtgca ggtattagaa       300
     gcgtatttca aaccgaaaat gaacacgact tatgaaagac acattttccg aaatctgtct       360
     caaggcacag aggaaacaat ggtacaatat gtttcaagat tgcggcaaca agcaaaaaat       420
     tgcaattttg aagacgcaga tacagaaatc tgtggtcaga taatagagaa gtgccattca       480
     acgaaattac gcagacgttt attagaaaaa tgtgaagtta aattggacga agtattagag       540
     attgcaaaga caatggaagc agtctcgctg caaacgaaag gcatggaagg mgaagcggtg       600
     gctcgcataa cggacaaaaa aaaacatgtg aagactggcg cgacgaagac aacagataac       660
     gtcgaatgct atcggtgcgg atacaaagga cataaataca cagatgagaa gtgcccggcg       720
     agagagagga cctgcagtaa gtgcgggaag tcaggacatt tcgcgagggt ttgcaagaca       780
     aggacggaaa caackggcaa cagctacagg aaaagcggac agaggaaagg ggttcgacgg       840
     ctcgacgaga agacagaaga agatgagaat gagcatgcgt tcagcctgag aagaaaagag       900
     atctacgcmg tggacggtaa atgtgttaac gccgcgatag gaggagttac tttaaactta       960
     ctagtagatt caggggcatc gtgtaatata atagacgagg aaacgtggaa atggtgtaaa      1020
     tcgcggaata ttaaatgtaa atcggaaaaa acggacggaa aaaaaatata cgcgtacggt      1080
     cagaaaaaag cgttagattt gctaggagaa tttcattgcg atattgagat agaaaatcag      1140
     aaagctcgag cgacgttctt agtattaaaa ggtagaggaa gagcgctatt aggttatgaa      1200
     acggcaacga agttaggaat tttgcggata ggaccggaaa taagtaatat taatgatttt      1260
     gaaacagagc aagacccaat ttttagaggc atgggtaaat taaaagattt ccaactaaca      1320
     ttaccgatag ataagacata cacgcctatt gcacaacccg tgagaagaat tccatttaaa      1380
     ttgcgcgagg aagtggaaaa acaaataaaa actttgatag ctcaggacat aatagaaaaa      1440
     gtcgagggcc ctaccgagtg ggtctctcca gtagttccta tagtaaagag aagcggtgag      1500
     ataagattat gcgtggacat gcggcgagca aacgaagcga ttattcggga aaggtatccg      1560
     ttaccagtat tagaggatat tttaaatgta gttggaggaa ataattggtt cactacattg      1620
     gatgttaaaa aggcatatca tcaaattgaa ttagaagagg aatcaaggaa aattactact      1680
     tttgtaacag attcagggct atatcggtat aaaagattaa tgtttggaat aagctgcgct      1740
     ccagaaattt ttcaaagaat tattaggtca attttgaagg attgtaaagg gactataaat      1800
     tttatggacg atataattgt ttgtggaaag acacgggaag aacatgatga aagattagaa      1860
     aaagttttag aaacgctgaa agagaaagga ataactttga ataaaagtaa atgtacgttt      1920
     agaaaaaaag aaataacatt tatgggattt aaaatttcag gaaacggata tcaaccgtta      1980
     gaatcaaaag tagaagcagt agaaaagttc caaataccta aaacggcgga ggaaatacgt      2040
     agttttctgg gactagttaa tttttgtgca gcattcattc ccaatttagc aacaattagt      2100
     gaaccattaa gaagattgac aagaaaagga ataaaatttc tatgggaaaa agaacaagat      2160
     agagcgttta aaattttgaa aaggagttta gcaagcgcgc aaacgttagg aatttttaat      2220
     ataaatgcaa aaacaagggt aatagcggat gcaagcccag taggattggg gtgcgtatta      2280
     acccaacggg acgacaaaaa tcaatggcgg ataattagct acgcgagcag aagcttgtca      2340
     gattgcgaaa ggcgatattc acaaacagaa aaggaagcat tagcgttagt attcgcatgt      2400
     gaaagatttt ataactggtt gtacggaata gaatttgaat tagtgacaga tcacaaagcg      2460
     ttagaatgta tatttgcacc gcgcgcaaaa ccgaatgcga gaatagaacg atgggtttta      2520
     cgtttactac catttaaata taaagtcata tacgaaaaag gaaaatcgaa tatagcagat      2580
     gtactgtcga gactctgtgg taaagagaac cgaaaaaaag aattcgaaga ggacgtgcat      2640
     tacattcgat gggtaacaac ggaatcggta ccaaaagcaa tgacattaaa agaaattgcg      2700
     gtagcgtcaa aagaggataa gaaaataaaa gaagtaaaat tagcgttaca aacagatgat      2760
     tgggacgcat tgaaaaattc gcggtataaa ataataaagg aacaattatg tatttataat      2820
     aatgtgttac taaggaatac gcgtataatt atacctgaag cgttgcaaag gaaaacgtta      2880
     atgttagcac acgaaggaca cccaggaatt gtcgcgatga aacagcggtt acgaagtaag      2940
     gtttggtggg aaggtataga taaagatgca gaaaaatttg ttaaatcctg taaaggttgt      3000
     caattagtac aacgtccgat agaaccacca cctgtcaagc gaaatcagtt accagaaaaa      3060
     gcatgggaaa caattgcgat agatttaatg gggccactcc caacagggga atatttgtta      3120
     gtaactaccg attattatag tcgatttgta gaagtagcaa ttcttaaaag gatatcggcg      3180
     aaagaaatac aagaagaatt attcgaattg tttgcgagac acggtttacc aaggacaatt      3240
     gtatgcgata acggtcgtca gtttacggat gaaggattaa aagattggct aaattcctac      3300
     ggagtaaaag tggcgcatgt agcaccgtac tggccacagg caaacggaga ggtagagaga      3360
     cagaatagga gtatcttaaa aagactaaaa atagcatatg cgcaaaagaa aaattggcgt      3420
     aatgaattgt taacatttct aatgatgtac cggtcaactc cacattcagt tacaggagta      3480
     acccccgcgg aattattgtt taatagaaaa ttaagaacga agataccgga aatagataat      3540
     agtagtaaat tcgtagagga agaaattaga gagcgcgata aatggttaaa agaaaaagga      3600
     aaacaatatt atgataaagc aaatagagct aaagagtgtg aattaggtca aggggatcgc      3660
     gtattaatca gggccccgaa agaaaataaa ctaagtccga atttcagccc ggaggaatat      3720
     aaagtaattg accgaaaagg aaattcagta acactagagt cagaagaagg aaggaagtat      3780
     aaaagaaatt taacgcaagt aagaaaagta atagatttag aaagcgaaga atcagaaaac      3840
     gaggaggaag aagtagttag taaggaaagg aaagagtagg agatgatcag agtagaacag      3900
     aaagtgacaa aaatgaaaaa gtagtagtaa gaagatctca gcgcgaaaga aaaccgccgg      3960
     agcgatatgg cgattataga gcacattcgt tagttggtaa ttaaatgtaa gagactcaaa      4020
     ttgtaagcgt ctagcatttt aaggaggaaa aggga                                 4055
//
ID   Gypsy-24_SI-LTR repbase;    DNA;    INV; 180 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_SI_;
KW   Gypsy-24_SI-I; Gypsy-24_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-180
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 439-439 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 180 BP; 57 A; 34 C; 53 G; 36 T; 0 other;
     tgtagtgtat agatacgcta ctgagcggta agcgtaaggc gcacgcgtag aggcgcatta        60
     ggtagagacg agagaccaga gactagcatg gctgcgagcc ggacgcacgt ggtatacgag       120
     ttacagcctg tatcgaagtg ctagcaataa agtgaatatt atataccaaa ggatactaca       180
//
ID   Gypsy-24_SiCu-I repbase;    DNA;    INV; 4269 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4269
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5047-5047 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..4213
FT                 /product="Gypsy-24_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDQEKKVIVKDTSDSEDVEFVTELTTQTPSKPGPAP
FT                 PPKPKKKKKKDTTDPTATSSGTKSTSTPQQTPQSPTEELEMGTVGILIPFD
FT                 PSKDDFEMWVGTFHCFLTANKLDEGKEPERCLGIFLSSIGISTYTLLCNLL
FT                 APTAPTSKNLSDLVDVLQKHFRPSSKAIAERFKFTGRTQQQGESVNDFVAA
FT                 LRTLSVHCKFTTXLKDRIRDQFIFGLRSEAAQRQLFTQDDNISLEDTVKLA
FT                 VAQEAAAASTALVRGQQSASATATEQVNKASSFGSHQKQHQKKKGNNNHQK
FT                 FQKQNNSKSQTPNNSKNKSQNNFNCSRCGSQEHSGNKCPFKDAKCYHCDRI
FT                 GHIKSACRSKGQHQQNNQLITDNVIDIKNVNSTQEDDTIWIDVKINGVKHR
FT                 MEVDSGCKSAVLSQDFWENQLGSPPLQKTPIVFRTYTRQIFRPLGVLPIEM
FT                 EYNGQKESHLIPVSKGTSLFGRNLLRKFKIDWKSIEDQCNAVSEXVPVQLP
FT                 KLLAEYEDIFKKPTAEDKIKNFTARIHLKEDATPKFLKARPLPYSLRVKVE
FT                 KELDEMEATGAITKIETSEWASPLVVVPKSNGNVRLTGDFKTTVNAQLHVT
FT                 QYPLANPDDLFVTVSGGNTYSKLDGSNAYHQIEVDEDSRRFLVINTHKGLY
FT                 RYNVLPQGIASSPAIFQHFVDTMMRGIPTTGSFVDDAITTGKTDADHLKNL
FT                 QQIFERMRQYNYKLSRDKCQFLQQSIEYLGHKISKAGIETTEQKVKDIINM
FT                 PRPRDVTEVRSFLGLVNFYSKFVKDLSSVCEPLHRLTRDNEPFVWNTKCKT
FT                 AFETVKKKITSTPVLAHFDPGKKQGISCDSSSYGLGVVLFQKNEDGTEQPL
FT                 AFSSKLLSDTERRYSQIEKEGLSIIHGVTKYFKYLWGKPFILVTDHKPLLT
FT                 IFGPKTQLPPLVATRLHHWSLTLSQFQYEVVYRKSSEHGNADALSRLPVRQ
FT                 VGEAVIGEEESVNMLASEQLEVLPVTASAIRKATARDKILSKVQQLILYGW
FT                 PPKLREEDKQLKAYFTRRDELSIVQGVIMWGIRVVVPTNLKEKILQQLHDC
FT                 HFGIVRMKAIARQHVYWPGIDGEIENIGKACNTCQQQAPSPSSAPLHPWQY
FT                 PERPWQRLHMDLAGPLHKCMWLIMMDAHTKWPEVFCMNNNTTSTAVISKLA
FT                 EVIARFGIPEQIVTDNGRQFVSSEFEQFCKANNIKHILSSVYHPRSNGEAE
FT                 RFVRTFKEGMRAQDMRVELRLQRFLLAYRNSPHATTNSCPAELLQGRRLRT
FT                 TMDLVRPDVATSVRTNQLKQEVGYNKRVKQREFKEEDNVWVQTFSKGDEKW
FT                 SLGKIISRLGPVTYVVQAGGRNLKRHVDQIRESHRKFMHGNSNQDEDDADH
FT                 DVETPPEDLD"
XX
SQ   Sequence 4269 BP; 1380 A; 960 C; 958 G; 966 T; 5 other;
     tttggcgacg agaagtcgtt tcccatagtc tcagatagac caagttaccc cttagctgct        60
     actgaaaaaa aaagttcaag tttttctcat cttcatgagt gaccaagaaa agaaggtcat       120
     agtgaaagac actagtgata gtgaagacgt tgaatttgtc acagagctca caacacaaac       180
     gccatcaaag ccagggcctg cgccaccgcc gaagcccaag aaaaagaaga agaaagacac       240
     caccgatccc acagcaacat catccggaac gaagtcaact tccacaccac aacaaacgcc       300
     gcaaagtcca acagaagaat tggaaatggg cactgtagga atcttgatcc ccttcgaccc       360
     atctaaagat gattttgaga tgtgggtggg cacctttcat tgcttcttaa cggcaaataa       420
     attggacgaa ggcaaggaac ctgaacgctg cctgggaatc ttcctttcat ccatcggtat       480
     ttcaacgtac acgctcctct gcaatttgtt ggctcccacc gctcccacca gcaagaatct       540
     aagtgacctt gttgacgttt tgcaaaagca ttttcgacca tcttcgaagg cgattgcaga       600
     gagattcaag ttcacgggac ggactcaaca gcaaggtgaa tcagtgaacg attttgtggc       660
     tgcattacgt acactgtcwg ttcactgcaa atttaccacc gasttgaagg acaggatcag       720
     agatcaattc attttcggat tgcggagtga agcagcccag cgacagttat ttacacaaga       780
     cgacaacatt tcactggagg acacagtgaa attggcagta gcacaagaag ctgcagcagc       840
     cagtacagcg cttgttcgtg gtcagcagtc agcatcagcg accgccacag aacaagtcaa       900
     caaagcmagt tcatttgggt ctcatcaaaa gcagcaccag aaaaagaagg ggaacaacaa       960
     tcatcagaaa tttcagaagc agaataattc caagtcacag acaccaaata acagtaaaaa      1020
     taaaagccaa aataatttta actgttctcg ttgtggctca caggagcatt ctggaaataa      1080
     atgcccattt aaagatgcaa agtgttatca ctgtgacagg attgggcata taaaatcagc      1140
     ttgtaggtca aagggccaac accagcagaa taatcagtta attactgaca acgtgatcga      1200
     tatcaagaat gtcaattcca cccaagaaga tgacacaatc tggattgatg ttaaaatcaa      1260
     cggcgtaaag catagaatgg aagtggattc tggatgcaag tcagcagtac ttagtcagga      1320
     tttttgggaa aatcagttgg gatcaccacc actccagaaa actcctattg tcttcagaac      1380
     ctatacaaga cagattttcc gcccactggg ggttttgccg attgaaatgg aatacaatgg      1440
     acagaaagag agccatttaa ttcctgttag taagggtact tcactttttg gmagaaattt      1500
     actgcgcaaa tttaaaattg actggaaatc tattgaagat cagtgcaacg ctgtgagtga      1560
     asacgttcca gtgcaattac caaaactatt ggccgagtat gaagacatct ttaagaagcc      1620
     gacagcagaa gataaaatca aaaatttcac cgctcgcatt catctgaagg aggacgcgac      1680
     accgaaattt ttaaaagcac gcccacttcc ttactctctg agagtgaaag ttgaaaagga      1740
     actggacgag atggaagcaa cgggtgccat cactaaaatt gaaactagtg agtgggcatc      1800
     tcctctcgtt gttgtgccga aatcaaatgg aaacgtacga cttaccggtg atttcaagac      1860
     aaccgtcaat gctcagcttc atgtcacgca atatccgtta gccaaccccg acgatttgtt      1920
     cgtcacagtg agcggtggaa acacctacag caaactggat ggaagcaacg cttatcacca      1980
     gattgaagtt gacgaagatt cacgcaggtt tctcgtcata aatactcaca aagggctata      2040
     cagatataac gtactccctc aaggaatagc ctcatcgcca gccatttttc agcactttgt      2100
     tgataccatg atgagaggca ttccaaccac aggctcattt gtggatgatg cgatcaccac      2160
     tgggaaaaca gatgcagacc atctgaaaaa tctacaacag atttttgagc gaatgcggca      2220
     atataattat aaattgtcaa gggataaatg ccaatttcta cagcaatcaa ttgaatactt      2280
     gggacacaaa atttccaaag ctggaattga aactacagag cagaaagtga aggacatcat      2340
     caatatgcca agaccacggg acgtgactga agtaagatcc tttttaggat tagtaaattt      2400
     ttactcgaag ttcgttaaag acctgtcttc tgtttgcgag cctctacacc gattgacaag      2460
     agataatgag ccattcgttt ggaacacaaa atgcaagaca gcgtttgaaa ccgtcaaaaa      2520
     gaagataacc agcacaccag tccttgccca ttttgatcct ggaaagaaac aagggataag      2580
     ctgcgacagt agctcttacg gtcttggagt cgttttgttc cagaaaaatg aagatggaac      2640
     cgaacagcca cttgccttct cttccaagct cctttcagac accgagcggc ggtacagcca      2700
     aatagagaag gaggggctca gtatcataca tggagtaaca aaatacttca aatatttgtg      2760
     gggcaaacca ttcattctgg tcactgacca caaaccgttg ctgaccatct ttgggcctaa      2820
     aacccaactt ccacccttag tagccacccg ccttcatcac tggagtctca ccttatccca      2880
     gttccagtat gaagtggtct acaggaagtc atcagaacac ggaaatgcag atgcactttc      2940
     tcgcttgcca gtgcgccaag tgggagaagc agtaattggg gaagaggaaa gtgtcaacat      3000
     gttggccagc gagcagttgg aggtgctacc tgtaacagca tcagctataa gaaaagctac      3060
     agctcgcgat aaaatcctat caaaggttca gcagttaatc ttgtacggat ggccgcccaa      3120
     gttgagagaa gaagacaagc aattaaaggc ttactttacc agacgtgatg agctcagcat      3180
     agttcaagga gtcatcatgt ggggaattcg tgtagtcgtt cccaccaacc tgaaagagaa      3240
     aattctacag caattacacg actgccattt tggaattgtc agaatgaaag caatagcaag      3300
     gcagcacgtg tattggccag gaattgatgg cgaaatcgaa aatattggaa aagcatgtaa      3360
     tacatgtcaa cagcaagcac cttcaccatc aagtgctcca ctccacccat ggcagtatcc      3420
     tgagagacct tggcagcgtc ttcacatgga tttggccggg ccgctgcata agtgtatgtg      3480
     gcttatcatg atggacgcac acaccaagtg gccagaggtg ttttgtatga acaacaatac      3540
     caccagcaca gccgtaatca gcaagttagc agaagtgatt gcccggtttg ggattccaga      3600
     gcagattgtc acagataacg gaaggcaatt tgtgtccagt gaattcgagc aattctgcaa      3660
     agccaacaac ataaaacaca tactttcgtc cgtgtaccac ccaaggtcaa acggagaagc      3720
     agagagattc gttaggacat tcaaggaggg catgcgagct caagatatga gagtagagct      3780
     gagactgcag cgattccttt tggcatatcg caattcaccc cacgccacca caaactcctg      3840
     tccagcggag ctcctgcaag gaaggcgatt gaggaccacc atggatcttg tacgaccaga      3900
     tgtggccacc tcagtccgca caaatcagct caagcaagaa gttggctaca acaagcgagt      3960
     caagcaacgc gagtttaaag aagaggacaa cgtttgggtg cagacattct caaaaggcga      4020
     tgagaaatgg tcgttaggca aaatcatatc ccgcctgggt ccagtaacct acgtcgtgca      4080
     agcagggggc agaaacctga agagacacgt ggatcaaatc cgtgagtccc accgcaagtt      4140
     tatgcatggc aacagtaatc aagacgaaga cgacgctgac catgatgtcg agacaccacc      4200
     tgaagatttg gattagttaa acgtagtctt ttcttcattc aagtgtgtat taagttaggg      4260
     aagaggaaa                                                              4269
//
ID   Gypsy-24_SiCu-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-309
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5101-5101 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 309 BP; 105 A; 55 C; 49 G; 99 T; 1 other;
     tgtaatgtat gcacattgaa tgtctggaat tatgatgata atttatattg gataattgat        60
     gaaatattca tgtctcctga atcttggtag aaaaccaatt taagttaatt tgcattatca       120
     tgatgtatga actgatgatc aagtatgact cttgtaactc tcctgacttt cagtcagacc       180
     caatctacct ttcwtgtagt aaagattaga gactagaaac aggcaaagac tccacgtacc       240
     atcattgatt tatgcacagc atagcatttc acataaaacc ttacactcgg catagtcaaa       300
     gatactaca                                                               309
//
ID   Gypsy-24_SiOr-I repbase;    DNA;    INV; 4639 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4639
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 360-360 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 4639 BP; 1633 A; 790 C; 980 G; 1235 T; 1 other;
     gctaaatttc agaagtggga ttcaaactaa ttcagattca agattcagac tcattcagac        60
     tcatgttaac aaatctaaaa cttctcaaaa aaaaatccgc ggatagtgtt cagaacgtgt       120
     tgcgtgacat tttattaaca aaatgaaacc gagtagggca aacgaagcgg gtagctccgg       180
     ctgcgaaatg tcacagctat cagaaaaaaa cgaaagacat agtgaaacta tagtgtcgcc       240
     cgatcttagt acaagcagcg atgacgtggt agatcgccta gcgagcgcgc taagtacggc       300
     cctgcgtaac ttaccatcga cccctgcggg gaggccgtcg atgacacggg gtgacgtggt       360
     gccgccgttt aacccgaaag acgttaacca agacattaat gcgtggtgcg taaaggtcga       420
     cgaaattaga aatatgttcg gttggtctga agaaatcaca atatttaatg ccatttctaa       480
     gcttgaaggg ttagcgtccg tatggtataa aggtctacgc tctataaact ttatgtggga       540
     ggagtgaaaa caaaaacttc gtcgtgcgtt tccctctcag cgagactatc atgacctcct       600
     agaggaaatg atgaaacgta agaaaaagtt tgacgaaact ttctcacagt atttctatga       660
     aaagcaggct ctcttaaatg cttgcgatat tacagggcga gaggctgtat catgtattat       720
     aggcgggata cttgatacac aaattcgtat aggggccaaa gctgctaact gtaatgacac       780
     aaaaagcttg tttgaatatt tacgtaattt aaaagataat agcacgatta aatttaaacc       840
     accttttaag aaaaatttta ttcaaaatct aactagaaaa cgtaaattta ttatagacca       900
     aaaggtaaac caaagctact gctataatgg taaaaagtac ggtcacttaa gacgtgatca       960
     tccaaacaat aagaccgata ataatcgagg gcgtaaaaca tctggcgact agtttctgtg      1020
     ttaggaaaaa gggctttacg caggtactga cccaaaaaga cgtaaatatc acgaggcaaa      1080
     atgactagtt aaggacacag tgcatagtac taccagcggt aaaaaatact ataaagatgt      1140
     aactgtaaac aaccgmactt tacgtgcttt tatagacctt ggtagtacat gcaatacaat      1200
     cagggcgact gatgcaaaag agttaggttt gagatgtgat aagtcccagg ctacatcagt      1260
     tcgtggcttt ggagggggaa ttgttacatc tcaaggaaca gttgaattta atcttgatat      1320
     agataatata aaattaaatg caatgacctt tgtagtgccc gtttttattc agtcgacccc      1380
     acttttaatt ggttatccag tttcagaaga taaaaaaatt gctattttta aagatgccga      1440
     aactttaaaa ttattttcaa aattacccga tattgaacag ttcggcgaaa gttcacagaa      1500
     aattaaaata tggcccaaat ctaacatcga aattccacca gggttttggg cgcatattcc      1560
     tgttagcact gactttgtcg gagatctata catagaggct agtatccgta tgaacgaagg      1620
     gcaagaatat tgtataccgc atactatact aagatttagt agtgatcatt ccacagttat      1680
     tcctgttata aatttgtcta atcgtagcgt agagataagc aaaaagagac ctattgctag      1740
     aggctggccg tgcataaaag aggtaaatga ctctaaagct acagtacagc gtgtagatat      1800
     tatgaatctg tcaccgttga cctttgatga catcactata ggtcacggtc aagatcagaa      1860
     taaaaataga ttactagaat tattaaatag atatagaggg tgttttgcta agaccactga      1920
     cgaactaggg tgtgcaagat ctgcggaaat atctattgaa ttacaacaag ataccccgtt      1980
     cgtttataga ccataccaca tgtctaaaag cgaacaacag gaagtaagtg taatcgttgc      2040
     tgatttactt aaaaataata tcattcgtga atcgagctca ccctattcat cgccagtgtt      2100
     attagtaaag aaaaagaatg gtgaaaaccg aatgtgcata gattatagga aattaaacca      2160
     cttaactgta aaagataggt acccactacc tagaattgat gatcaacttg ataaattaca      2220
     aggtagtgtt tattatacca cattagattt aagatcaggt tatcatcaga tacctataga      2280
     ggaaaattct aggaaataca ctgctttcgt aacatccgaa tctcaatatg aatataacag      2340
     acttcccttt ggcttaacaa acgcacctag tgcttttcag cgcttaatga ataaaattct      2400
     aagaccagca cgagatatag ctgcgatcta tctagatgac attttaatat attctaaaac      2460
     atgtgagcaa gctctaaata atttagaaca agttttaatt ttactagaga gagaaggctt      2520
     gactcttaat cccgaaaaat gcaaattttt aatgacatcc gtagaatatt taggttttga      2580
     aataagtaac agtacagtaa aacccgggaa ggctaaaacg ggagcagtcg aagaatttcc      2640
     tactcccaaa agtgttcata acattcgcca atttttaggt ttaactggat attttagaca      2700
     ctttgttaaa aactattcta ttattgcgaa accacttaca gagctaacga aaaagaataa      2760
     agaatgggtt tggggtgaaa aagagaataa cgcatttgaa aggttaaaga gaatgctcgt      2820
     agagcgccct atattacata tttttaatca agaagcatat accgaggtac atacagatgc      2880
     aagcgctatt ataggacttg gaggtatact gctacaaaga caaaatgacg acaaattaca      2940
     cccagtagca tattttagta gaaagacaag cccgacagag gcaaaatatc actcttatga      3000
     attagaaacg ctagctgtag tagagactct taaaaagtat agagcatatt tagtgggccg      3060
     tgattttgtg gtagtcactg attgcaatgc attgaaagcc agtagcaata agaaacaatt      3120
     aataccgcga attgcgcgat ggtggttaca actcttagag tatacattta cagttcagta      3180
     tagacccggc gatcgaatga aacacgtaga tgcactcagt agaaatccat ctatatctga      3240
     gaaacctgct gaagagattg taatgagaat agagcaggca gattgggtgt tatctgcaca      3300
     actaacggac gaaaagatac agaaaatccg tgaagtttta tcaaagccac ccgagtcaga      3360
     tgaggacaaa ttaatctata aaaaaattac acgttacgag atgggcgtat ttatagaata      3420
     actgtaaaag gaatacagtg ggttgttcca aaaggaatgc gacaacaggt agtaagagca      3480
     gcacatgatg atctagggca ttttgctgcg gaaaagacac tacttagatt gtgtgaacac      3540
     tactggtttc cacgtatgag acaatatgtt gaaaaataca taagttgttg tttgccgtgc      3600
     atttatggca aaaagcccag tggaaagaaa gaggggtttc ttaatcctat acctaaaaag      3660
     tctgagcctt ttgacacatt acatatagac cattatggac ctctacctaa gactagaaaa      3720
     ggtaatgtgc atataattgt agccgtagaa tcctttacaa agtttacttt tctaaaggca      3780
     gtgcgatcta caaatacaaa gtatgtgata cgatttttag aggaaatttt tacgatatac      3840
     ggaaaacctc gagtgttgat ttctgataga ggaagtgcgt ttacatcgaa aaagtttgtt      3900
     cactattgta aacagttaca gttaaaacac attcttaatg cggtatgtac acctagggct      3960
     aatggccaag tagagcggtt taatcgaact cttaaatctg cgctattaac gagttgttgt      4020
     gaggaagata aatgggacga atatttatct aaaattcagt ttgcgatgaa caatgtaaaa      4080
     agtaaagtta cgggactaac tgcaagtgaa ctattacatg ggtttcgtcc taggagcgga      4140
     atagactctg agttaataga cgaagtcaga caattaccga gagtgttaaa aaatatagtg      4200
     actattcgag agaaaatcgg taacagaata gagacagaag ctagtaagca aaagttaagg      4260
     tacgataaga cgcgtaaaaa gccgaaaaac tataatgaag gtgacttagt tgtgatacaa      4320
     aaacaagact ttgtgttagg gtcgcgtaaa atgaatttac cgtatagtgg accaatggtc      4380
     attaagaaag tattgcctaa tgatagatac gtagtttgtg atatgtcaaa ttcgcaccgc      4440
     acacgtaata aacggacata tgagaatgta gtcgctgtgg atcacattaa gccgtggcag      4500
     caaccaggcg gcgtatcaga cgataccgac gcaggtagcg gctcagatgg cgtaccggtt      4560
     gacgacgtca gcgatagcag cgacgattgc tgagtgtcct gcgggagact cggggcgagt      4620
     ccattgcagg atggccgaa                                                   4639
//
ID   Gypsy-24_SiOr-LTR repbase;    DNA;    INV; 1753 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1753
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 393-393 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1753 BP; 499 A; 283 C; 433 G; 538 T; 0 other;
     tataacgtga gtttattttc ccaataatat ttcttttaac ataggtttta aaacgacaca        60
     tattaagagt ttgtgcctgt taagtatttc tgcgtctcaa gcatgtcacg ccatatctga       120
     tttatgggcg tcctgcgctc cgatttaggg gtaaaagtat tcctagaaaa gcgttcaaaa       180
     tcgaacgatg attggtcgaa acaattctgt ttcgaaaaag aaagtttgag aatattacct       240
     aatgcagaaa aatacacata ttccgacgca cagtatagtt ttgagtgcgg tggcgtgaat       300
     agtgtgtcag ttaaagtaaa gttaattagt tagttagtgc agtgatataa gcagaaagca       360
     gggtgagtac atctcactaa gtgtcgtagt ttattaatta attagatcat gaatattttg       420
     ataaatatat tgatacgttt tagatagata tcatttgcgt acacatatta taaatattac       480
     attaaataac tgcgccgtat acatgctagg tcaaaatata gaatatgaaa gttagatagg       540
     gttagctatt aagtaatgcg gcggtatacc gatgcggcag ctacgtgagc tttgtttaga       600
     taggctattg aatctcttta ctctgtagag tcggtgctgt ctagtcagga ggagcgcaag       660
     gataggcccg ttaatgttgc ttggcaggat ctgggatccc gtaatgtcat agtagcaggg       720
     acgcgattcc tcgtaatgtc gcaacggtgt agggagtaaa atcctggtta tcaccggttt       780
     ttatgttgtg cctctgggcg taaccagatg cgggagcggg accccgagag attcagccgc       840
     tgtatccggg tcttctggtt cgtctagacc gtgccacggg ggggcgtgga cgggggcaag       900
     acagtacgtt agtatttgat gagataagta aatttgtaat cagagagaga gagagagatt       960
     ggatagttct tttataaagt acctaattag ttaatatgat agccacgtaa gctttaggtg      1020
     gattagtgaa tttctgttct cagtagagtt agtactgctt agcttgagga agcgcaagga      1080
     taggcccgtt aatgttgctt ggcaggatct gggatcccgt aatgtcatag tagcagggac      1140
     gcgaatcctc gtaatgtcgc aacgtcgcac acggcaggga tctgggattc cgtacgccgt      1200
     gtgtcaacgg acattattat tatgtctggg acggtacctc cgggtcttca gcggcgggaa      1260
     caggccccca gggtcctcga atctcggtat cgatatgttg tgtttattct gttgcccgtg      1320
     cggctgatta ctctggagtc cgcgccatca gggggtgcgt gggcggaagg ccaagcagtg      1380
     catttgcata gatatgtttg taaatcttgt attgagagag acagagataa attagtccat      1440
     ctagtaagat aaatagaaaa taaataatag gtagttaggg caaaacaata tcggcatata      1500
     gcagttaagt aggtcggaat tatgaactgg acacttatcc ttacttttaa ttgtgacagg      1560
     tattaaagta cgcctccgct cagggtcaat gcttcaggga ttatttggtg agtctgtgat      1620
     ttattatata tttgttttcc tgacaatata atactttaaa acattttaat tatcctgtca      1680
     cgagttatgg ttttgttagt tgtttagatt gtttattatt ttataaagaa agtaaacaaa      1740
     aaaaaatctt aca                                                         1753
//
ID   Gypsy-24_SpEx-I repbase;    DNA;    INV; 4876 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4876
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4093-4093 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..4116
FT                 /product="Gypsy-24_SpEx-I_1p"
FT                 /translation="MRLLEQQNRNFLTLIQAMKTPTSSSHGFRLPDFDAEK
FT                 QEVDARAWVTTAEMCLTNEDQHGAPLMVALSRALKGGASTWLSTVSYPGMT
FT                 WADFKRLFIARYDNSATIASFLIDLQSSRPKENECLASYAAGLMSSIMARW
FT                 NGLSTERLAIATILAHISQFDRRVQRLSFTTDIQTRGQLQQELQAVSFMKR
FT                 KLATDDRDAPEKRYRVNNTVKPLKCFICGKLGHKSMQCYQKDVKQDTQATP
FT                 KHLNHSSSKGRDSSTTAKPHASGITCFHCRAQGHYASSCPRRTERSSTGSG
FT                 SSKPANEKRVDLCVLNAPTGTLNHSGEKFPFYYDSGAECSLIKESVACKFK
FT                 GKRINKTVTMTGIGQTSVNSTIQILTLVEIDDINIEICFHVLSDHLLRYGI
FT                 MIGREILGHGLTVQLTTDRIKIFRSLFIASCEVEQTEIDWNSIDTDIPVDR
FT                 RTELVSTLQAFEKSFTTGIPTAPADTEPMQIRLKDPSKTVNRRPYRLSVDE
FT                 RKVVRGKIDELLQAGIIRPSSSPHASPILLVEKKDKSLRLCVDYRELNDNT
FT                 ISDRFPLPLISDQIDRLHGGHYFSTIDLASGFHQIPIAAESIESTAFVTPD
FT                 GHFEYLTMPFGLKNAPAVFQRAMINALGDLVNTYVVVYMDDVLIVASDVDE
FT                 ALERLNIVLKVLSEKGFTINFKKCTFLKQKVEYLGFEVNRGEIRPNPRKIE
FT                 ALTALPPPETVTQLRQFIGLASYFRQFVARFSQVMAPLYALTSGNGKLTWK
FT                 PEHEEVREKIIAALTNEPVLMIHDPEAETEVHTDASAIGYGAVLLQRKEGK
FT                 LHPVAYYSKRTSDAESKYHSYELETLAVVNAVKHFRRYLHGRKFRVVTDCN
FT                 SLQSTRKKLDLTPRVHRWWAFLQGFDFDIVHREGKNMSHADFFSRNPLPPA
FT                 ETKNNLSEKVVFKEVNLAELSQNWLIMEQQRDPEILKLLTDIDTNELPADV
FT                 AKTYERRSGVLHRKVQRNGKNRWLPIVPRSFRWSVVNNVHEGLLHLGWEKT
FT                 LEKLYDLYWFENMSKFVRKFVENCVTCKISKSHTGKVQAEMHPIPKVAIPW
FT                 HTLHIDATGKLSGKNDKKEYVYVLIDAFTKFVMLHHTLHIDTASSIKALKA
FT                 SVATFGAPSRLIADQGRCFASKEFREYCASVNIKLHLIATGSSRANGQVER
FT                 VMSTLKNMLTAVETSNRSWQDALPDVQLALNCTVSRVTKASPLELLIGKTA
FT                 RPIDIMTANDEEPHVDIIEVRKIAVENMEKASAYDKQRFDSTKAKVQSFSV
FT                 GDFVLLQNEERNQTKLDPKYKGPFRVIEVLDGDRYVLKSLSSARTYKYPHD
FT                 RLRKITDVDIHVGDDDEISHDNNETSHDNDDNTDITC"
XX
SQ   Sequence 4876 BP; 1347 A; 1020 C; 1186 G; 1323 T; 0 other;
     tcagaagtgg gattggatca cgacgactca cgtgttcgta ataatgaaga cgctagcgat        60
     gaaaaatgga tgcgtctgtt agaacaacag aaccgcaatt ttctgacgct gattcaagcc       120
     atgaaaacac ctacttcgtc gtcacatggc tttcgtttac cggatttcga tgccgaaaaa       180
     caagaagtgg atgcacgtgc ttgggtgacg actgcagaga tgtgcttgac gaacgaagac       240
     cagcatggcg ccccgctcat ggtcgctcta agtcgcgcct tgaagggagg agcttctacc       300
     tggctatcta ccgtatcgta tcctggtatg acgtgggccg attttaagcg actttttatt       360
     gcaaggtacg acaattccgc tactattgct tcgttcctga ttgatttgca aagcagcagg       420
     cctaaagaaa acgagtgtct tgcttcctac gctgctggtt taatgtcgtc gatcatggcg       480
     agatggaatg gccttagcac ggaacgtttg gctatagcta ctatattggc tcacatttct       540
     caatttgatc gccgtgtgca acgcttatct ttcacgaccg atattcagac tcgtggccag       600
     ctacaacaag agctacaagc ggtttctttt atgaaaagaa agctagctac tgatgaccgg       660
     gatgctcctg agaaacgata cagggtgaat aacactgtga agcctctgaa gtgtttcatc       720
     tgtggtaagc tgggtcacaa atccatgcaa tgttaccaaa aggatgtgaa acaggatact       780
     caagccactc cgaagcacct aaaccacagc agcagcaagg gaagagattc atcgacaaca       840
     gcgaagcctc atgcatctgg gatcacctgc ttccactgcc gtgcgcaagg tcactacgcg       900
     tcgagctgcc cgcggcgcac tgagaggagc agcaccggct ccgggtcatc aaagcctgcc       960
     aatgaaaaga gggtggactt gtgtgtcttg aacgcaccga ctgggactct aaatcactcc      1020
     ggtgagaaat ttccatttta ttatgactct ggtgctgagt gttcgttaat aaaagaatca      1080
     gtagcctgta aatttaaggg aaagcgtatt aataagactg tgactatgac tggaataggg      1140
     cagacttccg ttaactcaac aatacagatt ttgactttgg tagagattga tgatattaat      1200
     attgagattt gttttcatgt attgtctgat catcttctac gttatggtat tatgattgga      1260
     cgtgagattc taggacatgg tttgactgta cagttgacta ctgaccgaat taagattttt      1320
     aggtctcttt ttattgcttc ttgtgaggta gagcaaactg aaattgactg gaactctatt      1380
     gatactgaca taccagtgga tcgtagaaca gagttagtta gtaccttgca ggcttttgag      1440
     aaatccttta ctacaggtat acctactgca ccagctgata cggaaccgat gcagattcgt      1500
     ctcaaagatc cgagtaaaac tgtaaatcga cgcccttatc gattgagtgt cgatgagcgt      1560
     aaggttgtac gtggcaagat tgacgagctg cttcaggctg gtattatacg gcctagttca      1620
     tcccctcatg cgagtcctat actcttggtg gagaaaaagg acaagtctct tcgactatgc      1680
     gtcgattatc gtgaattaaa tgataacaca atctctgatc gttttccttt gcctcttata      1740
     tcggatcaaa ttgataggtt gcatggagga cactactttt ccaccattga tttggcatca      1800
     ggttttcacc agatccccat tgcagcagaa tctattgaga gcaccgcctt cgttaccccc      1860
     gatggtcatt tcgaatacct gacgatgcca tttggtttga agaatgcacc cgccgttttt      1920
     cagcgtgcga tgataaatgc tcttggagat cttgtgaaca cttatgtcgt tgtgtatatg      1980
     gacgacgttt tgattgttgc tagtgacgtt gacgaagcct tggaacgtct taatattgtc      2040
     ctcaaggtgc tgtctgaaaa gggttttacc atcaatttta aaaagtgtac ttttctgaaa      2100
     caaaaggtag agtacttagg gtttgaggtt aaccgtggag agattcgtcc taacccgcgt      2160
     aagattgaag cattaacggc actaccaccg cctgagacgg taacgcagct acggcaattt      2220
     atcggtttgg cgtcttactt tcgccaattc gtggcaaggt tctcacaggt gatggcgccg      2280
     ttatatgccc tgacgtctgg gaatggtaag ttgacctgga agccggaaca tgaggaagtt      2340
     agggagaaaa ttatagccgc tctcactaat gagcctgtgc tcatgatcca tgaccctgaa      2400
     gctgaaactg aagttcacac ggatgccagt gccataggct acggtgcagt cttactgcaa      2460
     agaaaagaag gtaagctaca tccagtcgcc tactacagca agcgtacgtc tgacgccgaa      2520
     tcgaagtacc actcgtatga acttgagacc ctcgcggtgg tcaatgccgt aaaacatttt      2580
     aggcgttatc tccatggtcg caagttcaga gtggtcaccg attgcaattc cctgcaatcc      2640
     acgcgcaaga agttagacct gacgccgcgt gttcatcggt ggtgggcttt tctacaaggg      2700
     ttcgatttcg acattgtcca tcgtgaaggt aaaaacatga gccacgccga cttcttctcc      2760
     aggaacccat taccgccagc tgaaactaaa aacaatctta gtgagaaggt agtatttaag      2820
     gaagttaatc tcgcagagtt atctcaaaat tggctgatca tggaacagca acgtgaccct      2880
     gaaattttaa agctcttgac tgacatcgat accaatgagc tccctgctga tgttgccaag      2940
     acttacgagc gacgatctgg agtcctgcac cgaaaagtgc aacgaaatgg taagaatcgt      3000
     tggttaccta ttgtcccccg ttcttttcgt tggtccgttg ttaataacgt gcacgaggga      3060
     ttactgcatt tgggttggga gaaaacactg gaaaaactct acgacctcta ctggttcgag      3120
     aacatgtcga agttcgtgag gaaattcgta gagaactgtg tgacttgtaa gatttcaaag      3180
     tcacacacag gtaaggtcca agctgaaatg cacccaattc caaaggtagc tataccatgg      3240
     cacacattgc acatcgacgc taccgggaaa ctgagtggca aaaacgacaa gaaggagtac      3300
     gtttacgttc tgatagacgc cttcaccaaa tttgttatgt tgcatcatac cctgcacatt      3360
     gatacagcaa gcagcatcaa agcgttgaag gctagtgttg ctaccttcgg tgccccatcg      3420
     cgcttgatcg ctgatcaagg gcggtgcttc gccagcaagg agttcaggga gtactgtgcc      3480
     tcggttaaca ttaagctgca cttgatcgcc acaggtagtt ctcgtgccaa cggacaggtt      3540
     gaacgagtga tgagcacgct caagaacatg ctcactgccg tagagacaag caatcgctca      3600
     tggcaggatg cattgcccga cgttcaactt gccctcaact gtaccgtaag tagagtcacg      3660
     aaagctagcc cactcgagct gctgattggt aagactgcta gacctatcga tattatgacg      3720
     gcaaatgatg aagagcctca tgtcgacatt attgaggtga gaaagatagc tgttgagaac      3780
     atggagaaag cttcagccta tgacaagcaa cgttttgact ctacgaaggc taaagtgcag      3840
     tcattctctg taggtgactt tgttttgcta caaaatgaag agcgaaacca gacaaaactt      3900
     gaccctaaat acaagggacc gtttagggtg atcgaggttc ttgatggtga tcgctacgtt      3960
     ttgaagtctc tttcttccgc ccggacatac aagtatccac atgaccgact gcgaaaaatt      4020
     acagacgttg acatacacgt aggtgacgat gacgaaatta gccatgacaa taacgaaact      4080
     agccatgaca acgacgacaa cactgacata acttgttgaa tgcattcatt gtaaaatgta      4140
     cctaccacag taaaagtatt cttattacct gtagtgttaa ctaaaaaaaa aaaaaaatac      4200
     gcgatttatg gttgaattga tgtatctcac gatagttatt ataaaaacaa tccgtgttgt      4260
     aataggaaaa ataaagtaac atgatgaaca aacccacttt aagtattatt ttgataaagg      4320
     ctcgaaatga ttatctcgat ggtgttgtgt tttgtaaccg gatggaggtt acatgtggag      4380
     gtgaccggat agaggttgcc tgttgtgttt tgtaaccgga tggaggttac atgtggaggt      4440
     gaccggatag aggttgcctg ttgtgttttg taaccggata gaggttacac gtttaggtga      4500
     ccgggtagag gttgcctgtt ttgttagtaa cccgatacag gttacgtgtt gaagaccgga      4560
     tggaggtcga ttggtttgat gcttatgact ggatggaggt tataagtgta atgatggtga      4620
     ccggatggag gtcagagtat gagcactgca ctttaatgag tttcctatta ttgaaggaat      4680
     atgggtgttg ttcaacatgt tagccttgag agaaagagtt tgctattttc gttaaaacct      4740
     ttgatgattt tggtcgaagt actttttgtt cccctctact tgggccagga atggccgaac      4800
     gactgttatg agtattcgag aatgttcttt ctctccaggt actccacacg aggacgtgtg      4860
     atcatcagga cggccg                                                      4876
//
ID   Gypsy-24_SpEx-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-330
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4153-4153 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 330 BP; 93 A; 63 C; 79 G; 95 T; 0 other;
     tgtcgaagcg tcaacgcata tcaatcgatt tagatatggc aactattgtt gagagcgtca        60
     agtaattact tgaggatggt tagcgtggag taatggcaac actgatccgg aagattaatg       120
     atactttgac attttgacag cgaatgagat tgacagacgt catattgcgc gggaaacact       180
     ttgggaaaag atcgcggcgt tggcggcagc aacaagcgtt actccccgct aaacttcctg       240
     cgttctcagt tattgtgttg tagctatatt ccttaaataa tattgtttga tttaataatg       300
     tcgcgaccca ctggtagcga atctccgaca                                        330
//
ID   Gypsy-24_SpFr-I repbase;    DNA;    INV; 3954 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3954
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1858-1858 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..873
FT                 /product="Gypsy-24_SpFr-I_1p"
FT                 /translation="MSLENSSEGSKPKTMDSDLAAISVQSRLLPFWREIPR
FT                 AWFIQFEAVVDPLKTSDDQKFRYVLQQLQTTDLQQLTDILYNPPTTEKYNA
FT                 VKNRLLAVYDKSDVKNFQKLISGLELGDQKPTQLLRKMRELGSGMITDEGL
FT                 KIEWLNHLPTQMRVVLSVNTESSLDTLAAMADKMAEYSEPATVAAVSTTSQ
FT                 ETMTSQFEILSKQVEKLCLEVAELRGRSRERHRNRYTPFRSRSRSQSRRQS
FT                 NKTSVKPGDPTWECRYHFRFGEKAKRCESPCCRKNKNKTASN"
FT   CDS           861..3941
FT                 /product="Gypsy-24_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NGVKLASTSTVADVDVPCSTNRLCVFDRDTRQRFLVD
FT                 TGAEISVLAATNRRKIKTTSAYTLYAANNTPINTYGEKTLRLNLGLRRSFL
FT                 WTFIIADVKTSIIGADFLRHFKLLVDLHKKKLVDYVTDISIDAFEVASSEQ
FT                 SVHVISSDQAYYDILKLFPEVLRPMSLKEPAKHDIVHHIETSSPPVFARAR
FT                 PLPPDKYKAAKEEFDHMLELGICRPSKSPWASPLHIVKKKDGGLRVCGDYR
FT                 RLNAVTRPDRYPIPRIQDFTYQLHNMNIFSKLDLKMAYYWIPIAEDDAQKT
FT                 AIITPFGLFEFTCMTFGLRNASQTFQRFMHQVLRGIDNCFCYVDDILLYSE
FT                 NEESHRHLLRQVLERLKKYGVMLKVEKCEFGKNKINFLGYEVSGNGIKPTE
FT                 ERTKAISSYPKPRTIAELRRFLGMLNFYRSCLPRQAELQSELNKYLHNMKR
FT                 NDKTPIEWTPQAELAFEKCRQSILEATELMHPLPGSPLALMSDASDFSLGA
FT                 VLQQKIGNGWRPLAYFSKAMSLTQRRYSVYDRELLAIYTAVKHFRRLIEGG
FT                 DITVYTDHKPLVNALTRPPSSSDTPRRERQLNFISQFCTSIKYVQGEDNSV
FT                 ADALSRIEDIQCPSIIDYAKLASEQEKDPVLKQLKGQTNLKFIDVTMPGIQ
FT                 QPIQCETSTGTPRPYLPITYRFEAFKAQHDLCHPGVKSTRKQMCSKFFWPS
FT                 MNKEVSDWTRACISCQRAKVHRHVVTPLNEFPPSARFEHIHIDIVGPLRLS
FT                 NDRRYCVTIIDRCTKWPEAVPVLEITAEEVAKALYVNWITRFGCPLRISTD
FT                 QGRQFESSLFRSLMIKFGISRIRTSAYHPQSNGMIERWHRSFKAALMARGT
FT                 TTQWTEELPTVLLGLRTALRINNSLSPAMMTYGTTLRLPSDFIVPTKSNFE
FT                 ENDYVRRLTETMASLKSEPRSNNSRTKTFIHHDLATCTHVFVRNNTVRAPL
FT                 TPPYDGPYEVIERYDKCYKIKLPLRTSVISIDRLKPAYILNESEEDHHGPD
FT                 QATQPHITKYGRTVKPVVRFA"
XX
SQ   Sequence 3954 BP; 1213 A; 997 C; 881 G; 863 T; 0 other;
     attggtgacc ccgagagaaa aaaaatgtcg ctggagaact caagcgaagg aagcaagccc        60
     aagacgatgg actccgacct agctgccata tccgtccaat caagactgct acctttctgg       120
     cgggagattc cacgagcctg gtttatccag tttgaagccg tcgtggatcc tttaaaaact       180
     tcagatgacc agaaattccg ctacgtgcta caacagctgc aaacaactga tcttcaacag       240
     ctgacggaca ttttatacaa cccaccgacc acggaaaaat acaatgctgt gaaaaatcgt       300
     ctactcgccg tgtacgacaa gtctgacgtc aagaatttcc agaagctgat cagtggtcta       360
     gagctgggtg atcaaaaacc cacacaactg ctgcgcaaga tgagagaact agggagcggc       420
     atgatcacgg atgagggatt aaaaatcgag tggcttaatc acctacccac acaaatgcgc       480
     gttgtgctat cggtcaatac ggaatcatca ctagataccc tcgcagcaat ggctgataaa       540
     atggcagaat actccgaacc cgcaacggtt gccgcagtgt ccacaacctc gcaagaaacc       600
     atgacgtcac agtttgaaat actatcgaag caagtggaga aattatgcct tgaagtggct       660
     gagctacgcg gacgatcaag agaacgccac agaaaccgtt acacaccttt ccgatcacgg       720
     tcacgttcac aatctcgccg acagagtaat aagacgtcag tcaaacctgg tgatcctacg       780
     tgggagtgta gatatcattt tcgattcggt gaaaaagcaa agcgctgcga gtcaccgtgt       840
     tgtagaaaaa acaaaaataa aacggcgtca aactagcctc gacatcgacg gtggcggacg       900
     tcgatgtccc ctgttccacc aaccgccttt gtgtcttcga tcgcgacact cgacagcgtt       960
     tcctcgtaga caccggcgcc gaaatttccg tgttagccgc aacaaataga agaaaaataa      1020
     aaacaacaag cgcctacaca ttatacgctg caaacaatac accaatcaat acttacggtg      1080
     aaaaaacgtt aaggttgaat cttggcctaa gacgcagttt tctatggaca ttcatcatag      1140
     ccgacgttaa aacctcgatc ataggggctg acttcctacg acacttcaaa ctgctggtcg      1200
     acctccacaa gaagaagctc gtcgactacg tgactgacat atcaatcgac gcgtttgaag      1260
     ttgcatcaag tgaacaatca gtgcatgtca ttagctctga tcaggcatac tatgacatac      1320
     tgaagttatt cccggaggtg ctgcgaccta tgtccttgaa ggagccagca aaacacgaca      1380
     tcgtgcacca tattgagacg agtagcccac cggtcttcgc acgagcccgc cctttgccgc      1440
     ccgataaata taaggctgct aaggaagagt tcgaccacat gctggaactc ggcatatgca      1500
     gaccttcaaa gagcccgtgg gcgagcccgc tgcatattgt taagaagaag gatggaggcc      1560
     taagggtatg cggcgactac cgacgactga acgcggttac tcgacctgac cgctatccta      1620
     taccacggat acaagacttt acgtaccagc tgcacaatat gaacatattc tcgaaacttg      1680
     acctcaaaat ggcctattat tggatcccaa tcgcagaaga cgacgcacag aaaacagcca      1740
     ttatcacacc atttgggctg tttgaattta catgtatgac gttcggctta cgcaacgcta      1800
     gtcagacgtt tcagaggttc atgcaccaag tgctgcgtgg cattgacaac tgcttctgtt      1860
     atgtcgatga cattctgcta tactcagaga acgaagagag ccacagacac cttctacgtc      1920
     aagtactgga gcgccttaag aagtatggcg tcatgctaaa ggttgagaaa tgtgagttcg      1980
     gcaaaaacaa gattaatttt ctcggctacg aagtctcagg gaacgggatc aagcccactg      2040
     aagagagaac caaggcaata tcaagttacc cgaaacccag gacaatagca gaattacgac      2100
     gctttctggg tatgctcaat ttttaccgca gctgcttacc ccgtcaagcc gaactacaga      2160
     gcgagttaaa taaatatcta cacaacatga aacgaaatga taaaacgccc attgagtgga      2220
     caccgcaggc agagttggct tttgaaaagt gccgccaaag cattttggaa gccacagagc      2280
     tgatgcaccc actacctgga agtccccttg ccttgatgtc agacgcttct gatttcagcc      2340
     taggcgctgt tttacaacag aaaataggaa acggttggag gccactcgct tatttttcaa      2400
     aagcaatgag cttaacccaa cgtcgctaca gcgtatatga ccgcgaacta ttagcgattt      2460
     atacggctgt caagcacttc aggagactta tagaaggagg cgacatcaca gtgtacacag      2520
     atcacaagcc actagtgaat gcactaacac gcccaccgag tagcagtgac actccgcgtc      2580
     gagagcgtca gctaaatttt atcagccaat tctgtacgag catcaagtac gtgcaaggcg      2640
     aagataactc ggtggcagac gcactgtcac gaattgaaga catacaatgc ccctcaatca      2700
     tcgattacgc aaagttagcc agcgaacaag aaaaagatcc tgtgttgaaa caactcaaag      2760
     gtcaaacaaa cctgaagttc attgacgtca caatgcctgg gattcaacaa ccaatccagt      2820
     gcgaaacatc taccggaacg ccccgacctt acttaccgat tacatatcgt tttgaggcat      2880
     tcaaagctca acacgatttg tgtcatcccg gcgtaaaatc aactagaaaa cagatgtgtt      2940
     ccaaattttt ctggcccagc atgaacaaag aagtaagcga ctggactaga gcctgcatca      3000
     gctgtcagcg agcgaaggtt catcgtcatg tagtaacccc gttgaacgag ttcccaccgt      3060
     cagcacgctt cgaacatata catatagaca tagtgggacc actgcgattg tccaatgatc      3120
     gacgatactg tgtgactatc attgatcgtt gcactaagtg gccagaagcc gttcctgtgc      3180
     tcgagattac cgctgaggaa gtagcgaaag ccctatacgt aaattggatt actagatttg      3240
     gttgcccgct aagaatatca accgatcaag gacggcaatt tgaatcatca ttgttccggt      3300
     cactaatgat caagttcgga atatcacgaa tacgaacatc ggcgtatcac ccacaatcca      3360
     acggcatgat cgagcggtgg cacagatcat tcaaggcagc actgatggca cgcggcacta      3420
     ctacacagtg gacagaagag ctacctactg tgttattagg tttacgcacg gctttgcgaa      3480
     tcaataacag tttaagccca gcaatgatga cgtatggcac tacgcttcgc ttaccatcag      3540
     atttcatcgt gccaaccaag tcaaactttg aagagaacga ctatgtacgc cgcctcacag      3600
     aaaccatggc ttcgttaaaa agtgagcctc gatcaaacaa cagtcgaaca aaaacattca      3660
     tacatcacga tctcgccacg tgcacacatg ttttcgtgcg caacaacact gttcgcgccc      3720
     cgctaacgcc gccgtatgac gggccgtacg aagttatcga gcgatatgac aagtgttaca      3780
     aaataaagtt accgctgcgc acatcagtga tttctataga caggctcaaa ccagcctata      3840
     tccttaatga gtctgaagaa gatcatcacg ggcctgatca agcaacccag ccgcacatca      3900
     caaaatatgg aaggaccgtg aagcccgttg tacgctttgc ttagagggga gtga            3954
//
ID   Gypsy-24_SpFr-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-392
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1877-1877 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 392 BP; 106 A; 100 C; 92 G; 94 T; 0 other;
     tgtgggacac acgttacctc aacgcactcc ttaccgccag cctgcaaaca tcaaacaacc        60
     gcgcgcgccg agcgcgccgc gcatactgcc gtggcgcggg cggcgatcga agacaatatc       120
     catccgttga aacaaacatg aaactggcca cggcgagatg ggggcgctgt agtcatttat       180
     acgcgggcgc attcggtcac tcaaaaacta gggtccctag atctgattgg ctgagccatt       240
     ttggaatgat tttgatgtag gtacaacgtt cacagatcat ttgtatatat agaagcgaag       300
     ttttggaaaa taaattcatt cacattttga cctcatcatc gcttgtttga tttactcaaa       360
     atacccaagt ctgcgtgtgg aagtacccca ca                                     392
//
ID   Gypsy-24_TrNi-I repbase;    DNA;    INV; 4795 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4795
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 227-227 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..4794
FT                 /product="Gypsy-24_TrNi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MDGDKSGSASTSSSITMSAEQFQQLLAAVGSGSKHRS
FT                 SLVRCPVKFSGNKSAQEVESFLSAVCVFKKVEQIDDKDALTGLPLILTNDA
FT                 ATWWQGIKNQVKTWKQFEERLRHAFAPKKLAYKIYQEIVEKKQKDDTLTEI
FT                 FIAEKRALLSELPSPGHNEQQEIDLVFGQIRFAIREKISRESITSFDDLLE
FT                 KAREVERNLGEKTEEKQIRKEDATTSSTKPKLRCNFCRLPGHTIDICRKRI
FT                 KAEQQKPKVIAVEAIPNATIKPKFSCYGCGEPGVVRSRCTKCNVQQVKIED
FT                 INFCSVSTASTKRLRPVVPICIGGIKGIGFVDTCAKSSVASYQLYLCLKRE
FT                 GKYIFNEEVMRITMADGVPKVQSVWTMLVPVTIYGRVIETQFIVLPHAKGN
FT                 KTLLGVGFIEDARMILNLPQLTCRFLDDPARVYDLQQESITETIVADVICN
FT                 ANLPELISPMSGSPEGVASPKPSTSGNMEEGLMRPCGPIVGIRAATAPQNT
FT                 LINHCNEPLAGAYAPTPSTSMETCQATVDCPRTPTYGPLMSIEATTPPNKR
FT                 KRLFDGFSPVIDALYRDARRSLEEDTIELSPKSKALFDSPSTDIAALDIED
FT                 SNCALNPEEYLELQRLLEKNTDVFVPNGKPTTRIEHYIDTGDHRPISVPPY
FT                 RLPPAKIQILKDEVSRMLTERIIEPCTSPWSAPVVMVPKKDGGTRVCIDYR
FT                 QLNSITTPDAYPLPRIDDLLHDAKPTPYMSTIDLRSGYWQISVREEDQCKT
FT                 AFVTPFGMYKFLRMPFGLRNAPATFQRLMDGFRVSLSHIKLCVYIDDLIIL
FT                 SSTFTQHQEDLQDVFIRLREYNLTANKEKCKFCCSKVKYLGHYITPNGLQM
FT                 DPHKVNSIVDMQSPTNIKHLLTFLQMCSWYRRFIPGFAKIAEPLTRLTRKN
FT                 MTWIWQEEQQEAFNKLKDLLVTGPVLAQADDSKPYIIKSDASNYAIGAVLV
FT                 QGEGEQEHPVEYASRLLTQAERNYTTTEREALAVVWAINKFRGYIEGTPIT
FT                 VLTDHQALKWLMSLKSPTGRLARWALQLQPYDITIKYITGRTNVVADALSR
FT                 PNCNDESKESCGICSIVVDAPRKNPKEIRETQLKDKDVEKIVRALEGNVEE
FT                 DARYWCQKGYIMNNGLLYRYNPDSASDSSQLVVPAQEQTDVISAYHDGPTA
FT                 GHYGAEKTYARITQRYYWKGMRKDIEAYIRNCLSCQRYKPSNLKPAGLLQT
FT                 TAMNKRFEVVAFDLFGPLPASSKGMTWILIIEDLASRWVELFPLEQATAAN
FT                 CAMILINDIFLRYGMPRRIISDNGTQFVSAVMQQVAFCLDIKHAFTPVYHP
FT                 EANPVERRNRDLKTQLAILVGDDHRTWPDKLPSIRFAMNTAVCSSTEHTPA
FT                 YLTFGRELRTPDDNEHDLREIILSENFIPEITPKLLTLAETLKRVKEIQEG
FT                 KEEKRKEYVDKNRRHSPEYKPGDKVLVDSHTLSKTAQAFSSKLAPRRDGPY
FT                 VILKSHGPSSYHIADPNTPNQSVGLYHSSALRPFQGPAESPLPAPALPIRK
FT                 RGRPPKRAEPXNSAVVSATTRGRPPKSHSSLSTSSRRLRSQRGR"
XX
SQ   Sequence 4795 BP; 1499 A; 1052 C; 1061 G; 1182 T; 1 other;
     acttggcgcc caatcgtgga tcccccagag agaaacctaa gacctagacc aaccgcagga        60
     acacagaggt ttactgtaca acataaccca cagaaggtta agaaacacga gacgatggat       120
     ggtgacaaaa gtggttcagc gtctacttcg tcatcaatta caatgtctgc agaacaattc       180
     caacaattat tggcagcagt cggttcaggg tcgaagcata gaagttcatt ggtgagatgt       240
     ccggtaaaat tcagtggcaa taaaagtgct caagaggtcg agtctttcct ttccgcggtt       300
     tgtgtattca agaaagtcga acaaatagat gacaaagatg cactcactgg gctaccactt       360
     atcttgacta atgatgctgc tacttggtgg cagggtatta aaaatcaagt gaaaacttgg       420
     aagcagttcg aagaacggtt acgacacgct tttgcaccca agaagttggc ttataaaatt       480
     tatcaagaaa tagtggagaa gaaacagaaa gatgacactc taacagagat tttcatcgca       540
     gaaaaacggg cgcttttatc tgaattacct tcacctggcc ataatgagca gcaagaaata       600
     gatttggttt tcggtcagat tcggtttgcg atacgagaaa agatatcaag agaaagtata       660
     acaagttttg acgatttgtt ggagaaagct agggaggttg aacgtaattt gggtgagaaa       720
     acagaagaaa aacaaatacg caaagaggat gctacaacaa gcagcacaaa accgaagtta       780
     cgatgtaatt tttgtaggct accaggacat acgatagata tttgcagaaa gcgtataaaa       840
     gctgagcaac aaaagcctaa agttatagca gtagaagcta tacccaatgc tacgattaag       900
     cctaagtttt catgctacgg atgtggggaa ccaggcgttg tacgcagtcg ctgtacaaaa       960
     tgtaatgtac agcaagtcaa aattgaggac attaacttct gttctgtcag caccgctagt      1020
     accaaacgcc tcagaccagt agtacccata tgtatcggtg gtataaaggg tattggcttc      1080
     gtagacacct gtgcaaaatc aagtgtagct tcgtaccagt tatatttatg ccttaagagg      1140
     gaaggcaagt atatattcaa tgaggaggtc atgaggatta ctatggcaga tggagtgccc      1200
     aaagtgcagt ctgtctggac catgcttgtt cctgtcacaa tctatggcag agtgatagaa      1260
     actcagttca ttgttttgcc ccatgctaaa ggaaacaaga cacttttggg agtgggcttt      1320
     atagaagatg cgagaatgat tcttaacttg cctcagttaa cgtgtcgatt cctcgatgat      1380
     cctgcgaggg tttatgactt gcaacaggaa agtatcaccg aaactattgt tgctgatgtg      1440
     atatgcaatg caaatttgcc agagttgatt tccccgatgt ctggttcacc agaaggagtc      1500
     gcttcgccaa agccctcgac atcgggtaat atggaggaag gtttgatgcg accatgtggt      1560
     cctatagtgg gcatacgtgc cgccacagcc ccgcaaaata ctctgataaa tcattgcaat      1620
     gaacctttgg ctggtgctta cgcgcccacg ccttccacca gtatggaaac ctgccaagct      1680
     actgttgatt gccctcgtac gcccacatat ggtccattaa tgtcaattga agctaccact      1740
     ccacctaaca aacgaaaacg tttatttgat ggcttctctc cagtcataga tgcgttgtat      1800
     cgagatgccc gaaggtcact agaagaggac accattgaac tgtctcctaa gtccaaagca      1860
     ttgttcgatt caccgagtac agatattgcg gcactagata tcgaagactc taattgtgcg      1920
     ctaaaccctg aggagtatct agaattgcag cgactcttag agaaaaacac tgatgtgttc      1980
     gttcctaatg gaaaacctac aactcgaata gagcattaca tagacaccgg agatcataga      2040
     ccaatttccg tgccaccgta ccgtttgcca cctgctaaga tacaaatcct gaaggatgaa      2100
     gtaagtagaa tgctgactga gagaataata gaaccatgca cgtccccgtg gtcagcacct      2160
     gtcgttatgg tcccaaagaa ggatggcggg acacgagtct gcattgacta ccgacaatta      2220
     aattcaatta cgacgccaga tgcgtatcca ctccctcgca tagacgatct tctgcatgat      2280
     gccaaaccta cgccgtacat gtcaacgatc gacctccgct caggctattg gcaaataagt      2340
     gtaagggagg aggaccagtg caagactgcg ttcgtgacac catttggtat gtacaagttc      2400
     cttaggatgc cttttggttt gcgcaatgca ccggctacct ttcagcgttt gatggatggg      2460
     tttcgtgtgt ccctcagcca cattaaacta tgtgtctaca ttgatgattt aattattctg      2520
     tcatcaacgt ttactcaaca tcaggaggac cttcaagacg tattcatacg cctgcgagaa      2580
     tataacctga ccgctaataa ggagaagtgc aaattctgtt gctcaaaggt taaatatctg      2640
     ggacactata ttacacccaa tggactacag atggatcctc acaaagtgaa ttctatagta      2700
     gacatgcaat cgcccactaa cataaaacat ttactgacat ttttgcaaat gtgctcttgg      2760
     tacagaagat ttatccctgg gtttgctaag attgctgaac ctttaacgcg acttaccagg      2820
     aaaaatatga catggatatg gcaagaagaa cagcaagaag cttttaataa gcttaaagat      2880
     ctcctcgtca ctggacctgt attagctcaa gcagatgatt ctaaaccata cattataaaa      2940
     tcagacgcca gcaattatgc tatcggtgca gttctagtgc agggggaggg tgaacaagag      3000
     caccctgtcg aatatgcgag ccgattactt acgcaagctg aaagaaatta tacgacaaca      3060
     gaacgtgaag cgctcgcagt tgtttgggca attaataaat ttaggggtta catcgaaggg      3120
     acccctataa ctgttctgac ggatcatcag gctctcaaat ggctcatgtc attaaagtca      3180
     ccaactggtc gcttagcaag atgggcacta cagttacagc cttacgacat tactataaaa      3240
     tacataaccg gcaggacgaa cgttgtagct gatgccttgt cacgcccaaa ttgcaacgat      3300
     gaatctaaag aaagctgtgg aatatgtagt atagtggtag atgcgccccg gaaaaaccca      3360
     aaagagataa gagaaacaca attaaaagat aaagatgtag agaagatagt aagagcattg      3420
     gaaggaaatg ttgaggagga tgcacgctac tggtgtcaaa agggttacat aatgaataat      3480
     gggttactat atcgctataa ccctgatagt gctagtgata gtagtcaact agttgtccct      3540
     gcacaagaac aaactgacgt aatatcggca tatcacgacg gaccaactgc cggtcattac      3600
     ggagcagaaa aaacatacgc tagaataact caacgttatt attggaaggg catgaggaag      3660
     gatattgaag catacattcg gaactgtctg tcctgtcaaa gatacaaacc ttcaaactta      3720
     aaacccgcag gactactcca aacgactgca atgaacaaaa gatttgaagt cgtcgctttt      3780
     gatttgtttg gccccttacc cgcttcttcc aaaggaatga cttggatatt aattattgag      3840
     gatctcgctt ctagatgggt agagttattt cccctagagc aagctactgc agcaaattgt      3900
     gcaatgatcc tcattaatga tatatttctt cggtacggca tgccacgccg gataatcagc      3960
     gacaatggca ctcaatttgt tagcgctgtt atgcagcaag tagccttttg tctcgacatt      4020
     aagcatgcct tcacgccagt gtaccaccct gaagctaatc cagtagagcg tcgaaatcga      4080
     gaccttaaaa ctcagcttgc catacttgtt ggagatgatc atcgaacctg gccagataaa      4140
     ctcccaagta tccgattcgc catgaatact gctgtttgtt cctccactga acatactccg      4200
     gcctatctca cgttcggccg agagttaaga accccggacg acaatgagca tgatcttcgt      4260
     gagattattt tgtcagaaaa tttcatccct gaaattacac ccaagctatt gaccctcgct      4320
     gaaactttga aaagagttaa agaaatacag gaaggtaaag aagagaagcg aaaggaatat      4380
     gtagacaaaa atagaagaca tagccctgaa tacaaacccg gagataaagt tcttgttgac      4440
     tcgcacactc ttagtaagac cgcccaagca ttcagctcaa aacttgctcc acgccgagat      4500
     ggcccctatg taattctgaa aagtcacgga ccaagctctt accatattgc tgaccctaat      4560
     acaccgaatc aaagcgtagg gctatatcac tcatcagcct tacgtccatt ccaaggcccg      4620
     gccgaaagtc cactgcctgc acccgctctg ccaattcgga agcgtggacg accacctaaa      4680
     agagctgaac cacwaaattc tgccgtggtc tccgccacaa ctcgaggacg accaccaaaa      4740
     tcacattcaa gcctgtctac ctcgtcgaga cgtcttcgga gccagagggg gagat           4795
//
ID   Gypsy-24_TrNi-LTR repbase;    DNA;    INV; 530 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-530
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 181-181 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 530 BP; 125 A; 114 C; 102 G; 189 T; 0 other;
     tgtaacgagt agactacgcg cacgtcttaa ctccgtgagc ccgctagctt agtgtgccac        60
     acaagttatc gcgcactgtg cgtatgcaca cagatgcacc gcgcacggct ataaaaacct       120
     gcttccgtcg cgacacgtca gttcgactct gcgcgggcat tgcatccgac gactcggaac       180
     aactccttcg ctgatcgaac gcactctcac gcgatacgtc acgcccttag tgtattcgta       240
     atacggaaca ttattggtgt gatttattgt ttgttatcat cttttagaat agttctaccg       300
     tagtagtttg tggcgcttca cgcacttgtt ttgtattatt acattagtag ttaatagtta       360
     gtattttatt ttcttttgtt tgctaagtaa tttagagaat acccactatt tgtttttttt       420
     tttatatacc gtcacattct ttaacttttc cctgtgaact tgtgtttatt gtttaatata       480
     ggttattagt gagcaatctg gtgtatcatt tattaagaac cctagttaca                  530
//
ID   Gypsy-24_TrVa-I repbase;    DNA;    INV; 4739 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4739
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 269-269 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..4615
FT                 /product="Gypsy-24_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MATAVNIPAPLILTGNLSANWRMFYQNFEIFLIASNN
FT                 NEKDDSVKVALLLNVIGQEGVDLFNTFNLTDAERKDLNTVKTKFQNHTTPK
FT                 VNVTFERYVFNNRSQKEGETFDQYVIELRKIAKSCEFDNLRDSLLRDRIII
FT                 GIRNQHVREALLRTEDLTLDKAISYCQSAEISQAQAAQMDCGQTSSVDAVN
FT                 SKSRKYHQPYKSNFKQGSSFHPKQSSAYHSKHSSSASHHKQSHSSYGNKQP
FT                 TSSRSNGSSNCIYCGTQHPPRNCPAYGVKCTKCKKSNHFAAMCKSARSVHY
FT                 LDGVDDENSFSDSDELEYLEEIKVVPCDSVNSSSKEWFQKVFLENSLVNFK
FT                 LDIGASVNTISLEIFNKLNSAVLLQPTSISLQVFGGQIIKPVGQANLMCQV
FT                 NGKVMKLNFQIVNETTQPLLGLQACSNLNLVKRVEAIKSTQVNVEKNKLIN
FT                 SNPELFKGLGKFPEKFNIKIKDNSILPNEPPRRIPSSLKSNFKKALDKLIN
FT                 QGIIEKVDEISTNHCVSNLVVVEKQNGDLRFCLDPQALNDLIITQHYLLPT
FT                 TAEISEKLQFNKFYSVFDLKDGYHQIELDETSSNLCCFSTPFGIFKYKRLP
FT                 FGISCASETFQERNERIFGDISNVLIYQDDILVFAKTEAEHDRAVQAIIQR
FT                 ALQYGIKFNSNKLQYKQSSVKYVGFVFSEEGRRLDDSRVEALLSIESPSTK
FT                 KELQRCIGMFNYVRDFIPNMSAIIAPLRNLLKDDIVFQWLPIHEKSFNELK
FT                 NLVANSPVLVNFNPSVAIEIQCDASQNGLGCVLLQNKQPVAFASASLTPAE
FT                 QNYSQSEKELRAIDFSLHKFHNYVYGYKILIKTDHKPLVPLMSKPVHKIGS
FT                 SVLRRIRLKLFKYKLKVEYLPGPKMYIADLLSRSFLKTTSSDDTGITEIVH
FT                 SIVKHLPMSDSRKHEFLQETSSDSELSLLKQLYLNGWPSHKHQVPDLVKWA
FT                 WSMRYDIYVDSDLVFYNDRLCVPKALTSLIMNLLHSGHNGRDKTLAKAQQV
FT                 YYWRNMHTDISNLVATCNVCQKFQPMKVKSPMITPYIPYFPFEVVALDILQ
FT                 TLGKNFLILIDLYSRWIEICPIKQKTATSVIEKLKTIFCTHGIPKRIQADN
FT                 NPFNSQEFLIFARTYDIELITCSPHYHRGNGMAEKACHIAEQILKKSNEQK
FT                 VDYRELLLEYRNTPLAKLNVSPSQILMSRQARTFLPVSSSTLEPKVVKDLR
FT                 LRMLENQQKSKVFYDKTASHTSEDFNCGDNVLIKCNKTKDWTPGTIIEKHS
FT                 APRSYIVQQQNGSQLRRNETHLKAFKGQVKQTNLNVPPYDLSPVKSSLKKK
FT                 SEETQPTSSSTVVSESVPQPSSSSTIVSDSVPVPSVSGSPQNEESYSTPIS
FT                 SPIPVLKSPDISVVYQSNTSASRQDRTKPTVSNPVKVKPPLRTSKKPASES
FT                 SQASMLSKSSSRGRIITPPQRYLT"
XX
SQ   Sequence 4739 BP; 1568 A; 980 C; 805 G; 1386 T; 0 other;
     tggcgcagtc gtttctatct cgttttcgtt tcgttttttc gtaagtaaag tgttacgtgc        60
     cgcgattccg cgaacgtgat tatgcagaac caacgcgaac ccagcaaacc tcgtgtcatt       120
     catggcgaat aaatcaattc cgtaaagcaa cgaaaggttt tctttgccca tgcaagcatt       180
     gtattacttt caacggatgt aagattgatt caaggattca tttaaagcag ctagccaaat       240
     cgtagactta ctcgcacatc tcttttgttc atcatatgca gatgctcatc ataacctcaa       300
     catggcgaca gcagttaaca taccggcacc tctcatcctc acgggaaatt tatcagcaaa       360
     ctggcgtatg ttctatcaaa actttgaaat tttcttaatt gctagcaaca ataatgagaa       420
     agatgattca gttaaagtcg ctctcctgct caacgttata ggacaggaag gggtagacct       480
     attcaacaca ttcaatctca ctgatgcaga gagaaaagat ttaaatacag ttaaaactaa       540
     atttcaaaac catacaactc ccaaagttaa tgttacgttt gaaagatatg tttttaacaa       600
     tagatcccaa aaagagggag aaacttttga ccaatatgtc atagaactcc gtaagattgc       660
     aaaatcatgt gaatttgata accttcgtga ttctttatta agagacagaa tcattatagg       720
     tataagaaat caacatgtcc gtgaagctct acttcgtaca gaagatttaa ctctcgataa       780
     agctatatcg tattgtcaat ctgcggaaat cagtcaggcg caagcagcac aaatggattg       840
     cggtcaaact tcctccgttg atgcagtaaa tagcaaatct agaaaatacc atcaacctta       900
     taaatcaaac ttcaagcaag gctcatcttt tcatccaaag cagtcatcag catatcattc       960
     gaagcattca tcctcagcat ctcatcacaa gcagtcacac tcatcatatg gtaataagca      1020
     accaacatcg tctcgctcta acggatcatc caattgcatc tactgtggta ctcaacaccc      1080
     acctagaaat tgtcctgcgt atggagttaa gtgcacaaag tgtaagaaaa gtaatcattt      1140
     tgcagcaatg tgcaaaagtg cgcggtctgt tcattattta gatggcgtcg atgatgaaaa      1200
     tagttttagt gatagtgatg agttggaata tcttgaagaa ataaaagttg ttccatgtga      1260
     ttcggttaat agctcaagca aagagtggtt ccaaaaagtg tttttagaaa attctctagt      1320
     caattttaaa ttagatatag gcgccagtgt taataccatt tcactcgaaa tttttaataa      1380
     attaaacagt gcggttttgt tgcaaccaac tagcataagc cttcaagtct tcggaggcca      1440
     aataattaaa cctgttggtc aggcgaattt aatgtgccaa gtaaacggaa aggtaatgaa      1500
     gcttaatttt caaattgtca atgaaactac tcaacctctt ctagggttac aagcctgttc      1560
     gaatcttaat ttagtcaaaa gagttgaagc aatcaaatca actcaagtta atgttgaaaa      1620
     aaataaactc attaactcaa atcctgaatt gttcaaaggc ttaggcaaat ttccagaaaa      1680
     atttaatatc aaaattaaag ataattctat tctgccaaat gagccaccga ggagaattcc      1740
     ctcatcgtta aaatccaatt tcaaaaaagc ccttgataag ttgatcaatc aaggaattat      1800
     tgaaaaagta gatgaaattt ccacaaacca ttgtgtcagc aatttagtag ttgtcgagaa      1860
     acagaatggg gatcttaggt tctgcctgga ccctcaagcc ttaaacgact taataattac      1920
     ccagcattat ttactaccaa ctactgctga aatttctgaa aaacttcaat ttaacaaatt      1980
     ttattctgtg ttcgatttga aggatggcta ccatcaaatt gaacttgatg aaacatcgag      2040
     taacctctgt tgtttctcca cccctttcgg gatttttaaa tacaaaagac ttccatttgg      2100
     tatctcatgt gccagtgaaa cttttcaaga aagaaatgag cgaatatttg gtgatatttc      2160
     taatgttcta atatatcagg atgatatttt agtctttgcc aaaacagaag cggaacatga      2220
     tcgtgcggtg caggccataa ttcaacgtgc tctacagtat ggaatcaaat tcaactccaa      2280
     caagcttcaa tacaaacaaa gcagtgtcaa gtatgtaggg tttgtgttca gtgaagaagg      2340
     tcgccgattg gacgacagcc gtgtcgaagc gttactttca attgagtctc cgtcaaccaa      2400
     gaaggaactt caacgctgta ttggtatgtt taattatgtc agagacttta ttcccaatat      2460
     gtctgccatt attgctccac taagaaactt actaaaagat gacatcgttt ttcagtggct      2520
     acccatccat gaaaaatcat ttaatgagct gaagaaccta gtagcaaact ctcctgtttt      2580
     agtaaatttc aatcctagcg tagcgataga aatccaatgc gatgcaagtc aaaatggatt      2640
     gggatgtgtc cttctccaaa ataaacaacc agttgcgttt gcctcagcaa gtttgacacc      2700
     agccgagcaa aattattcgc aatcagagaa agagctaagg gctatcgact tctctcttca      2760
     caaattccat aattatgtct acgggtataa aatactcatc aaaaccgacc acaaaccttt      2820
     ggttccacta atgtcaaaac cagtgcacaa aatcggttcc agcgttttgc gtcgtattcg      2880
     attaaaattg ttcaaataca agctcaaagt agaatatctt ccaggtccca agatgtacat      2940
     cgctgatttg ttatctcggt cgtttcttaa aactacgtca agtgacgata ccggaattac      3000
     cgaaattgtt cactctattg tcaaacactt gccaatgtcc gattctcgaa aacatgaatt      3060
     tcttcaagaa acttcaagtg attcagaact tagcctcctc aaacagctgt atctaaatgg      3120
     ttggcctagt cataaacacc aagttcctga tctagtcaaa tgggcatggt caatgagata      3180
     tgatatctat gttgactcgg atctagtttt ttataatgat cgtttgtgtg ttcccaaagc      3240
     actaacatct ctaatcatga atcttctaca cagtggtcac aatggacgcg acaaaacact      3300
     tgccaaagcg cagcaagtat actattggcg taatatgcac accgatatct ccaatttggt      3360
     cgccacttgt aacgtgtgtc agaagtttca gccaatgaaa gtcaaatcac cgatgatcac      3420
     tccatatatt ccttattttc catttgaagt ggttgctctt gatattttac aaaccttagg      3480
     taagaatttt ttaatcctaa ttgacctcta ttcaagatgg atagaaattt gtcctatcaa      3540
     acagaagaca gctacttctg tcatagaaaa attgaaaacc atcttttgta ctcatggcat      3600
     tccaaaacgt attcaagctg ataataatcc tttcaattcg caagaatttt taatatttgc      3660
     tcgaacttat gacattgaac ttattacttg tagtccacac tatcaccgtg gaaatggcat      3720
     ggccgaaaaa gcttgccaca tagctgaaca aatattgaaa aagagcaatg aacagaaagt      3780
     tgattatcgt gaactgttac ttgaatatcg taatactcca ttagccaaac ttaatgtgtc      3840
     tcctagtcaa attttaatga gtagacaagc tcgaactttt ttacctgttt cctcgtcaac      3900
     cttagagcca aaagttgtca aggaccttag attaagaatg ttggaaaatc aacaaaaatc      3960
     caaagtattt tatgataaaa cagcctcgca tacgtctgaa gattttaact gcggagataa      4020
     tgtgttgatc aaatgcaaca aaactaaaga ctggactcct ggtaccatca tcgaaaagca      4080
     ttctgctcca agatcgtaca tcgtgcagca acaaaatgga tcgcaactta gacgtaatga      4140
     aactcatctg aaagcgttca aaggtcaggt taagcaaacc aacctgaatg ttccaccgta      4200
     tgatttatcc cctgttaagt catctctaaa aaagaaatcg gaagaaacac aaccaacgtc      4260
     atcgtcaaca gtcgtgtcgg agtctgttcc tcaaccatcg tcgtcttcaa ctatcgtgtc      4320
     ggattctgtt cctgttccca gtgtctcagg tagcccccaa aatgaagagt cgtacagtac      4380
     tcctatttcg tcaccaatac ctgtgctgaa gtcaccagac atctcagtag tttatcaatc      4440
     caacacgtca gcatcaagac aggacagaac taaacctaca gtctccaatc cggtaaaagt      4500
     aaaacctcca ttgcgtacat ctaagaagcc agcttcagaa tcatcgcaag catccatgtt      4560
     gtcaaaatca tctagtcgtg gtagaatcat tactcctccg caacgctatc tcacttaaaa      4620
     ccaaagaact ttaaatccta ttttttatta tcatttccaa ttttaaaatc ctagcatcaa      4680
     aatactaatc agtaatccca tctctctttt cgttctttat ctttatttta aaagggaga       4739
//
ID   Gypsy-24_TrVa-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-24_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-212
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 328-328 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 212 BP; 60 A; 41 C; 37 G; 74 T; 0 other;
     tgttgcagtg tcgcgcctag cggcaaccct gcttttctag tttgtaatgt tggcagctct        60
     gtgagctgaa ccagctgtcc attattaaag ttagctctaa gcaaaatgca catgccgcat       120
     tgttcctatt ttgtataatt gaatctcaag aatatatatc ttataattag taaattatgt       180
     cgtaatcctt ttaatgaatc agtcctaaaa ca                                     212
//
ID   Gypsy-25-I_NVi repbase;    DNA;    INV; 5574 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.05, Created)
DT   08-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-25-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5574
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 986-986 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(325..1269,921..2150,1589..2815,2586..5066)
FT                 /product="Gypsy-25-I_NVi_1p"
FT                 /translation="HQVSYCLSFFSTDGARRRVALFRQSRAREGSNNRRSE
FT                 SLSLRSVRNTWCTRPHIIAATRVPLSTLINLSLRARSRPCSERSRSRPFEP
FT                 RNRSPRILSAIFLSARSLSRALRIAAQSGGHLVFALSPAFARCLAPRAATE
FT                 VRLSKRTPRRFVVYDAAILFFPRYHRARSPPPNARVVEAARAGVRRGRFAL
FT                 VTSGRPLRRVWSSAPRASRWLHSLLSCASGKPAQPATPRCSERTTPVRVAN
FT                 LVPLCGQPHAAHQISPRVARPTIRCCTAQCLVSSPPTAKICCSLSRTSSLT
FT                 LRRTARLITSSSSLTTGSSKIARSVEQRPARVSLAPLPSVVRQRQARTARH
FT                 TAVLRAHNTSPRSESRAALRAAARRAPNFSARSSPDDSMLHSPVPGQQSAN
FT                 GQNMLLAQQNFELNAPPHGAANNEQQQPHNRLQQNCALIEDDDANGVEAIS
FT                 KCSLPNYWSFNPRLWFAQTESAFQSNRIIKDSSRYNLLVSNLPPEVAQEVS
FT                 DIILAPPAEHRYETLKAAVISRLAASADQQLHQLLNEVQLGDRTPSQLLRY
FT                 MRRLAGNAISDEALRIRWLDLLPSQASRMCRVLRTSTLDELATLADELVAP
FT                 TPSVSAVSRPSSPASSGIVSGTTTPLPQHEVVSLRLAMSQISATLQQQSLV
FT                 LQSILTALATKQQQQQQQPQTQRRSRSRTPVSQRQPRSASQPSSTANPAWC
FT                 WYHRRFGSEATQCRPPCSYPTQGNCPHAFPAASVHAPPGRKRHLRRGATHQ
FT                 MARPASIPGQPHVPRAQDVHAGRARHARRRTRRANPISQRSLAPQLASIER
FT                 HRFWYHHAAPTTRGCLAPSRHVANFGHAAAAVARPAVNTDGARNETTTATT
FT                 ATADAEAQPLAHARQPAPATERVATIVHRKPSMVLVSSEIRKRGNAVQASM
FT                 LLPDAGKLLAPPPPQAAAVGANDEQRLHVLDRSSGLRFLVDTGSAVSLLPR
FT                 NFLKRTLQRGPLKLSAANATSIDTFGAHHMDVDLRLHRPLSWKFIVADVSN
FT                 PILGADFLAHYGLVVDVKRKRILDTDTSRHATCSLKSPEIHSVEVCISADV
FT                 AEGHLRRPDAAILGPRNPRQHNHRPPGPRRAASHHHNRPSRSSQGSSTPWP
FT                 STRSRTCGIQGIVGDGDSAPVRQLLGQKGIFADLMRQYSDLATPGSTTIAL
FT                 PGLDAQHHITTTGPPAAAKARRLLGPRLEAARAEFKVLLEMGIVRLSDSSW
FT                 ASPLRLVLKPDGTYRITGDYRQLNSRTVPDRYPLPIIEDLLLALGGTIFSV
FT                 VDLKKAFYQLPIAPEDAHKTAIITPFGLFEFTRSSLGLRNAAQSLQRAMDQ
FT                 LLRDLPFARAYLDDIIVASNNEEEHVGHLRTLFDVLRAANIKVNPEKCVLG
FT                 KKQVTYLGYLVSAEGSRPPQDRIDAIQAFPKPGNSAQLRRLLGLINYYRRC
FT                 IPGAARLLAPLNDLLRHIPPKKKAIPITWTPAAEEAFSACKRALANAASTT
FT                 FLRDDAPRRLLADASDHAIGAALEQQDPDGSWKPLGFFSRKLSNAERNYST
FT                 YDRELLAAFAAIKHFKGILEGGPFTLVTDHKPLTFAAQQPSEKASPRQARQ
FT                 LDYILQFQVTLAYTKGPDNVVADALSRVETIGMPANLDLATLAQHQATDPD
FT                 LPHILEAPTPSLVLRPLDIDQTTLHCAIDGNQVRPYIPRQLRRTAFDVTHG
FT                 LSHPSVRASIRLIAQKYVWPGMRKDIARWARNCVQCQQSKVHRHNRAALGD
FT                 FAAPDARFNHIHLDIVKMPLHSGFQYCLTIIDRFTRWPEAIPMPDQQAITT
FT                 ARAYFGRWIAVYGTPLTITTDQGAQFEAALFSELAKLIGASRVRTTPYHPQ
FT                 SNGMVERFHRTLKGALMCCAPTPWPDALPAVLLGLRTTFKEDLQASPAEML
FT                 FGTTLRIPGDFFVPSSHPGANAPAFVAELRALMQRLRAVPGSRHAPPLAPF
FT                 FHPNLRTCTHVFRRVETVQADAAATLHRAHIESWSA*"
XX
SQ   Sequence 5574 BP; 1132 A; 2036 C; 1430 G; 976 T; 0 other;
     gtggtgaccc cgagaagaac atcaaccgac gccaagcgga gcagccatct tgggactttg        60
     gcgtccctca ccaacgcagc cgaaaaccgg agcccacctg cagtacggcc ccggagatct       120
     gcagcgcttc ctggcccaac ctcgccgact ccaaatcatc gctacacgcc ccatctacag       180
     ccagcaaccc gaggacgccc agcaccagcc cctttacagc gaacgtgcct gggcctctcc       240
     tccagctcca gcggcagcag cacgagcagc gcgcccgcag ccttcgccga gcaacgacat       300
     cgcatcagcg taaggtttcg ctagcaccag gtatcgtatt gcctttcctt tttttccacc       360
     gacggcgcgc gacgacgagt cgctcttttt cgccagtccc gcgcgcgtga aggaagcaat       420
     aatcgccgga gcgagtcgct ctctcttcgc tccgtgcgca atacctggtg cacgcggccg       480
     cacatcatcg ccgcgacgcg cgtgccgctg agcacactca taaatctctc tctccgcgcc       540
     cgctcacgac cttgctccga acgctcaagg tcaaggccgt tcgagccgcg caacagaagc       600
     ccgcgcattt tatccgccat ttttctttcc gctcgctctc tctcgcgcgc gctccgcata       660
     gccgcgcaga gcggcggcca tcttgttttc gctctctctc cagcgttcgc tcgctgcctc       720
     gccccgcgcg ccgcgaccga ggtccgcttg agcaaacgca cgccgcgtcg gttcgttgtg       780
     tacgacgcgg ccatcctttt ttttccacgt taccatcgtg cgcgctcgcc gcctcccaac       840
     gcgcgcgtgg tcgaggccgc tagagcaggc gtgcgtcgcg gtcgcttcgc cctcgtcacg       900
     agtggccgtc cgcttcgtag agtgtggagc agcgccccgc gcgcgtctcg ctggctccac       960
     tcccttctgt cgtgcgccag cggcaagccc gcacagcccg ccacaccgcg gtgctccgag      1020
     cgcacaacac cagtccgcgt agcgaatctc gtgccgctct gcgggcagcc gcacgccgcg      1080
     caccaaattt ctccgcgcgt agctcgcccg acgattcgat gctgcacagc ccagtgcctg      1140
     gtcagcagtc cgccaacggc caaaatatgt tgctcgctca gcagaacttc gagcttaacg      1200
     ctccgccgca cggcgcggct aataacgagc agcagcagcc tcacaacagg ctccagcaaa      1260
     attgcgcgtt gatcgaggac gacgatgcga acggcgtcga ggcgatctct aaatgctccc      1320
     ttcctaatta ttggagtttt aaccccagat tgtggtttgc acagacggag tcggcgttcc      1380
     agtccaacag aatcatcaaa gacagcagcc gctacaacct cctcgtctcg aacctgccac      1440
     cagaagtagc gcaggaggtc tccgacatta tcctggcacc accagcagag caccgctatg      1500
     agaccttgaa ggcagcggta atctcacgcc tcgcagcatc ggccgaccag caactccatc      1560
     agctcctcaa cgaggtgcaa ctcggtgacc gcacgccttc ccagctgctt cggtacatgc      1620
     gccgcctggc cggaaacgcc atctccgacg aggcgctacg catcagatgg ctcgacctgc      1680
     ttccatccca ggccagccgc atgtgccgcg tgctcaggac gtccacgctg gacgagctcg      1740
     ccacgctcgc cgacgaactc gtcgcgccaa ccccatcagt cagcgcagtc tcgcgcccca      1800
     gctcgccagc atcgagcggc atcgtttctg gtaccaccac gccgctccca caacacgagg      1860
     ttgtctcgct ccgtctcgcc atgtcgcaaa tttcggccac gctgcagcag cagtcgctcg      1920
     tcctgcagtc aatactgacg gcgctcgcaa cgaaacaaca acagcaacaa cagcaaccgc      1980
     agacgcagag gcgcagccgc tcgcgcacgc ccgtcagcca gcgccagcca cggagcgcgt      2040
     cgcaaccatc gtccaccgca aacccagcat ggtgctggta tcatcggaga ttcggaagcg      2100
     aggcaacgca gtgcaggcct ccatgctcct acccgacgca gggaaactgt tagcgccgcc      2160
     gcccccgcag gcagccgcgg ttggtgctaa cgacgaacag cgcctgcacg tcctcgaccg      2220
     ctcgtctgga cttcgcttcc tcgtcgacac gggctcagcc gtttcgctgt tgccccgcaa      2280
     ctttctcaag agaacactac aacgaggccc tctcaagctg agcgcagcta acgccacgtc      2340
     catcgacacg ttcggcgcac accacatgga cgtggacctt cgcctgcacc ggcctctctc      2400
     gtggaagttc atcgtagcag acgtctcgaa tccgatcctc ggcgccgact ttctcgccca      2460
     ctacgggctc gtcgtcgacg ttaaaaggaa acgtatcctc gacaccgaca cctcaagaca      2520
     cgcaacatgc tcgctcaaat cgccagagat ccactccgta gaagtgtgta tatcagcgga      2580
     tgtagcagaa gggcatcttc gccgacctga tgcggcaata ctcggacctc gcaaccccag      2640
     gcagcacaac catcgccctc ccgggcctcg acgcgcagca tcacatcacc acaaccggcc      2700
     ctcccgcagc agccaaggct cgtcgactcc ttggccctcg actcgaagcc gcacgtgcgg      2760
     aattcaaggt attgttggag atggggatag tgcgcctgtc agacagctcc tgggctagcc      2820
     cgctacgcct cgtccttaag ccagatggca cctaccgcat cactggcgac tacaggcagc      2880
     taaacagccg caccgtgccg gatcgctacc cgctcccaat aattgaagat ctcctgctcg      2940
     cgctaggagg cacaattttc tctgtcgtcg atttgaagaa agctttttac cagcttccga      3000
     ttgcgcccga ggacgcgcac aaaaccgcca tcatcacccc attcgggcta tttgaattca      3060
     ccagatcgtc gctgggccta cgcaacgccg cccagtctct gcagcgagcc atggaccagc      3120
     ttcttcgaga cctgccattc gctcgtgcgt acctcgacga tataatcgtc gcctccaaca      3180
     acgaagaaga gcacgttggt cacctcagaa ccctgttcga cgttcttcga gcggccaaca      3240
     tcaaagtaaa cccagagaaa tgtgtcctgg ggaagaaaca agttacgtac ctgggctact      3300
     tggtctccgc cgagggctca aggccaccac aagacagaat cgacgctatt caagcctttc      3360
     cgaagcctgg caactccgcc cagcttcgcc gattgctggg cctcatcaat tactatcggc      3420
     gctgcatccc aggcgcagct cgcctcctcg caccgctgaa cgacctcctg cggcacattc      3480
     caccgaagaa gaaggccatt ccgatcacct ggacgcccgc cgcggaggaa gccttcagcg      3540
     cgtgcaagcg cgcactcgct aacgccgcca gcacgacatt cttgcgcgac gacgcgccga      3600
     ggaggctgct cgccgacgcc tctgaccacg caatcggcgc ggctctcgag cagcaagacc      3660
     cggatggctc gtggaaaccc ctgggcttct tctcaaggaa gctctccaac gcagaaagaa      3720
     actacagcac gtacgaccgc gagctcctgg cagccttcgc ggctatcaag catttcaagg      3780
     ggattctcga gggcggccct ttcacgctcg taaccgacca taagccgctc accttcgccg      3840
     cacagcagcc atcggagaaa gcatcacctc gccaagcacg ccagcttgac tatatcctgc      3900
     aattccaggt cacactcgca tacacgaagg gtccagacaa cgtggtcgcc gatgctctct      3960
     ccagggtcga gacgattggc atgccagcca atttggacct ggcgacgctc gcccaacacc      4020
     aagcaaccga cccagacctg ccacacatcc tcgaagctcc aacaccgtct ttagtgctac      4080
     gcccgctcga catcgaccag acgacgctcc actgcgcgat agacggcaac caggtgagac      4140
     cgtacatccc tcgacagctc cggaggaccg cgttcgacgt cacacacggc ctttcgcacc      4200
     cgagcgttcg agcgtccatc cgccttatcg cgcagaagta tgtgtggcca ggtatgcgca      4260
     aggacatcgc gcgctgggct cgcaactgcg tccagtgcca gcaatccaag gtgcatcgcc      4320
     acaaccgtgc tgctctgggg gacttcgcag ctccagacgc tagattcaac cacatccact      4380
     tagacatcgt caagatgccg ctgcactccg gcttccaata ttgtctgacc atcatcgacc      4440
     gcttcacgag gtggcctgaa gccatcccaa tgccggacca gcaggccata acgaccgcca      4500
     gggcttactt cggacgctgg atcgctgtct acggcacacc tttaacgatt acgacagacc      4560
     agggagcaca atttgaagcc gctctgtttt cagaattggc aaagctcatc ggcgccagca      4620
     gggttcgcac gacaccgtat catccccagt caaacggcat ggtcgagcgc ttccaccgta      4680
     cgctcaaggg cgccttaatg tgctgcgcac ccacgccttg gcccgacgct cttcccgctg      4740
     tacttctcgg actgcgcacg accttcaagg aggatctcca ggcatcgcca gccgagatgt      4800
     tgttcggcac gacactccgc atcccaggcg acttcttcgt cccgtctagt catcctggag      4860
     ccaacgcacc cgctttcgtc gccgagctga gagcgctgat gcagaggctg cgcgccgtac      4920
     ctggatccag gcacgcaccg cctctcgcgc ctttctttca tcccaacctt cgcacgtgca      4980
     cgcacgtctt tagacgtgtc gagacggttc aggcagacgc tgcagccacc ctacaccggg      5040
     cccatatcga gtcctggagc gcctgagcga ccaggtttac cgagtcgaga tcaacggcca      5100
     gtccaaggcc atctccactg catcgctgaa gccagctttc ctcgagtcgg cggatcgaga      5160
     ggactctccg ccggctccac agcctccagc tcaacctggc tcgcagcctg cccaggcgcc      5220
     ggccccacca tctccagcat cccagtcgtc ggcggatcga gaggactctc cgccggcccc      5280
     gcagcctgcc cgggagcagg cctttccacc tgcgactcca cagcggtcgg cggatcgaga      5340
     ggtctctccg tcggcctcac cgcctgcccc agagcaggcc tcaccgcctc cggtgccgcg      5400
     gccagagccg ccgccggccc tccagccgtc ccagcagcag gccgcaccac caacgcccgg      5460
     cctgccaccc tcggcagtgc gaccagccca gaaccacacc ctcaacaggc aaccacggcg      5520
     acatcgtgta tcgttcctcc tggcacctga cgtcgtcact ggtgggggag tagc            5574
//
ID   Gypsy-25-LTR_NVi repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.05, Created)
DT   08-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-363
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 987-987 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 363 BP; 86 A; 111 C; 97 G; 69 T; 0 other;
     tgtgggggct cccgccgacc accaccggag ccaccgacgg aaacagcgcc tggtccccag        60
     gcccgacttc acttaagcag tcgcgctttc cggccaccac cgctccgcgg cgccccctcc       120
     gagccgccac gatgggtggc gatcaggcga cgcggcgggg ctcgagcgcc atgttagaac       180
     cagagagaac gctctggtgc ttcgaacgag cgacacgcat cagagcttat aagagagaga       240
     gagtttgagc taaataaaga gtcttatatt ttattaaatt gacttcacat ttattacgac       300
     accctatcga gccggcgagt tatctgcgaa cctggagaat cccgattcgc acacgtttct       360
     aaa                                                                     363
//
ID   Gypsy-250_AA-I repbase;    DNA;    INV; 4523 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-250_AA_;
KW   Gypsy-250_AA-LTR; Gypsy-250_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4523
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1101-1101 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3348-3815] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..4157
FT                 /product="Gypsy-250_AA-I_1p"
FT                 /translation="MANEAGESSGAVKFEAGGVVPVVRAGMFGQIEQYVVG
FT                 ENFEEYINRLEMFFLVNDTQDNRKVPVLVTVAGPSLYTIATRLCAPEDPRT
FT                 KSYADLVKLLKEHLGPTTNVVAERYKFRKCEQLSSQSITDFIISLKATAQT
FT                 CEFAAFLSDALRDQFVAGIRDQSLRKKLLTEPGLTFDKACSLARSWEAALS
FT                 QNKEMSTQSPQKIGTFRKEVHQKLKVKRSNPGKEESKTSRPCQQPSKPCFR
FT                 CNRLHDPNTCPARSWTCYSCGKEGHVSTCCRSKNKQTKKPGGSNRVAEMSE
FT                 AVEVLRLNMLGGPVEAAASTLSSSFEAKSAEEKCQSSVSLAILEQASSGPT
FT                 PGSLNKLDSPEFVSLECDGRRIEFEADCGACRSVISADTYRKFFPNRKIKG
FT                 TSLEFVSVSGQRIKPQGTLEVSVTAPSGIHGRLELVVIRTDREVNPLLGRD
FT                 GLDLVFPDWRRIFSGKSVGKFEHSFESELKSRFPRIVSESANNVITGFTAE
FT                 IVLKPDTSPVFHKAYSVPFLLREKVEQGLDKLVEDGILVPVRSSLWANPIV
FT                 VVPKKDGSVRICLDGKAALNRYTTVEHYPLPRVDDILAKLANWKLFCKIDL
FT                 SGAYLQVQLSESSQVLCTINTHRGLFRYTRMPFGITSAPAIFQSIMDQVLD
FT                 GSPGIAYLDDIIVGGATIDECRRNLFMVLQKLNDHNVRINVLKSSFFESEI
FT                 DYVGYAITSDGIRPSEAKVKAILDAPPPQNVNQLQAYLGLLNYYHRFLPNL
FT                 SIHLRPLYDLLQKNRRFLWSSECQVAFEKTKRSLVENDLLEPYDPLKPITL
FT                 AVDASPYGVGAVLSHVVGNVEKPISFASSTLTPAQTNYAQVHKEALAVIFG
FT                 VTKFHKYIYGAKFKLVTDNTGIKEIFNPSKGISAIAAARLQRWALILASYS
FT                 YAIEHRPGKFMHHADALSRLPLPSLAEVDHTDLGLNSVSSSGQEVVNIDVV
FT                 RTHQKSDPILTKIFAFVSHGWPSNVDPSYKPYFLIRNHLGIDREVLYFDDR
FT                 VVVPDSLKLAVVEQLHSNHDGVVRMKMLGRMYVWWKNFDKDINDYVQKCLV
FT                 CQKRQSVPKEIVESKWPKCERPFQRLHMDLFYFEGHTLLIIVDSYSKYIDV
FT                 RLLKGSNSLQLIEQVESFFASFGIAEEIVTDNGPPFNSELFVRFLEVNSVT
FT                 VSKSPPYHPQSNGLAERGVRTVKDVLKKYLLDDKRQSLSIGRKINRFLINY
FT                 RNTPSTVTNRTPSSMVFAYTPRTPTNMVNPRKVELESVPSKPVVRNNDDRI
FT                 IQSPPEIRNTYRAGDKVLYRNHFKDLVRWIPAIVLKKLSPLTYLISVEGNV
FT                 RMVHANQIRVSDLSDVFHPTVPIAQPVQQRIV"
XX
SQ   Sequence 4523 BP; 1265 A; 1014 C; 1082 G; 1159 T; 3 other;
     agttggcgac gaggataaaa agtgattagt tgcgcgttgt gtgtaggtag tgaaaaaaaa        60
     gtcgaagtga agaaccggtc ggtaacacgt gttcgtgaac ataacctcac attcgattag       120
     tcgtcatggc gaatgaggca ggtgaatcaa gtggtgcagt gaaattcgaa gctggcggcg       180
     tagttcctgt cgttcgtgct ggcatgtttg gccaaatcga gcaatatgtc gtgggtgaaa       240
     atttcgagga gtacatcaac cggctggaga tgttcttctt ggtgaacgac acgcaggaca       300
     atcgaaaagt ccccgtgtta gtcacagtcg ctggtcccag tctgtacacg atcgcaaccc       360
     gattgtgtgc tccggaagat cctcgtacaa agtcgtacgc cgatctagtc aagctcctaa       420
     aggaacacct tggccccacc actaacgtcg tcgcagagcg gtacaagttt aggaagtgtg       480
     agcagctttc gtcccaaagc atcaccgatt tcatcataag cttgaaagcg accgcgcaaa       540
     catgtgagtt tgctgcattc ctgtcggatg cactgcgaga ccagtttgtc gctggtattc       600
     gtgaccagag tctccggaaa aagttactta ctgaaccggg cctaaccttc gacaaagcat       660
     gttcgctagc tcgaagttgg gaagcggctc tgagtcaaaa caaggagatg tcaacccaat       720
     cgccgcagaa aatcggaacg tttcggaaag aagtccacca gaagctaaaa gtcaagcgaa       780
     gcaacccagg aaaggaggag agcaaaacaa gtcgtccgtg tcagcaacca tcgaaaccat       840
     gctttcggtg caatcgtctc catgatccaa acacgtgccc agcgcggagc tggacgtgct       900
     attcgtgtgg aaaggaaggt cacgtgtcaa catgctgtcg atcgaagaat aagcaaacca       960
     agaagcccgg aggaagtaat cgagtcgctg agatgtccga ggccgtcgag gttctacgcc      1020
     tgaacatgct cggtggtcca gtggaagcag cagcgtccac gttgtcgtcg tcgttcgaag      1080
     ccaaatcagc agaggaaaaa tgtcagtcta gcgtcagtct ggcaatcctg gagcaggcaa      1140
     gcagtggtcc aactcccgga tcgctgaaca agttggattc gccggaattc gtgtcgctgg      1200
     aatgcgatgg tcgtcgaatt gaattcgaag cggactgtgg cgcgtgccgc agcgtaattt      1260
     ccgcagatac gtatcgcaaa ttcttcccaa accgtaagat taaaggtacc tcattggaat      1320
     ttgtatccgt ttcaggtcag cgaatcaaac cgcaaggtac gctagaggtc agcgttaccg      1380
     ctccgtccgg aatccatggt cgtctggagc tggtagtaat ccggaccgac agagaagtca      1440
     acccgttgct tggtcgtgac ggtctcgatc tggtattccc ggactggaga agaatatttt      1500
     ctggcaagtc tgtgggtaag ttcgaacatt ccttcgaatc agagctcaag tcgcgttttc      1560
     cgagaatagt tagcgagtcc gcgaataacg tcattaccgg tttcaccgcg gagatagttt      1620
     tgaagccaga tactagtccc gttttccata aagcgtattc agtcccattc ctacttcgtg      1680
     aaaaagttga gcagggctta gacaagttag tcgaagatgg tattttagtc cccgtccgat      1740
     cgtcgttgtg ggcgaatccg atcgtagtag tccccaagaa agatggttcc gttaggattt      1800
     gtctcgatgg aaaggccgcg ttgaatcgtt acaccaccgt cgaacactat cctttgccac      1860
     gtgtcgacga tattttagca aaacttgcca attggaagct attttgcaaa attgacttgt      1920
     cgggagcgta tctccaagtg caattgtctg aatcgtctca agtgttatgt acgattaaca      1980
     cccaccgtgg tctttttcgt tacacgcgta tgccgtttgg tattacatct gcccccgcga      2040
     tttttcaatc cattatggat caagtcctgg acggttcccc tggaattgcg tacctggatg      2100
     acatcattgt tggtggcgca acaattgatg agtgtcgtcg taacttgttt atggtgcttc      2160
     aaaagttgaa cgaccataat gtgcgaatca acgttcttaa atcgagcttt ttcgaaagtg      2220
     agattgatta cgttggatat gctatcacgt ctgatggtat tcgtcctagt gaggcgaagg      2280
     taaaagctat tttggacgct cctcccccac aaaatgtgaa tcagctccaa gcataccttg      2340
     gactgctaaa ctattatcac cgttttcttc cgaatctttc gattcatctt cgtccgttgt      2400
     acgatttgct acagaaaaat cgaagatttc tgtggtcatc cgaatgccaa gttgcattcg      2460
     agaaaacgaa acggtcgctg gtagaaaatg atctacttga accctacgat cccctaaaac      2520
     cgataacgtt agcagtcgat gctagcccat atggcgtggg tgcagttttg tcccacgttg      2580
     tcggcaatgt cgaaaaaccc atttcgttcg cttcatctac actgacccct gcacagacca      2640
     actatgctca agtgcacaaa gaagcactcg ctgtgatctt tggagtcacc aaatttcata      2700
     aatacattta tggtgccaaa ttcaaattgg taactgataa caccggcata aaagagattt      2760
     ttaacccgtc gaaaggcata tctgctattg ccgctgctag attgcaacgg tgggctctaa      2820
     ttctcgccag ttacagttac gcaattgaac atcgtcctgg caaatttatg caccatgcag      2880
     atgcactgtc gcgtctacca ttaccgagtc tagcagaagt agatcataca gatctagggc      2940
     ttaatagtgt gtcttcgagt ggtcaagaag tagttaatat tgacgtcgtt cgtactcatc      3000
     agaaatctga tccaattttg accaaaattt tcgcattcgt gtcacatggt tggcctagca      3060
     atgtcgatcc ttcgtacaaa ccgtattttc taataagaaa tcacctaggc atcgataggg      3120
     aagtgttata cttcgatgat agggttgttg tcccggatag tctgaagctg gctgtagtag      3180
     aacagttaca ttcaaatcac gacggagttg tgagaatgaa aatgttaggt cgaatgtatg      3240
     tctggtggaa aaacttcgat aaggacatta atgattatgt tcagaagtgt ctcgtgtgtc      3300
     aaaaacgaca atctgtccct aaggaaatcg ttgagtcgaa atggccaaaa tgtgaacgcc      3360
     cattccaaag gcttcacatg gatctatttt actttgaggg tcacacgcta ctgataatag      3420
     tcgatagcta ctcaaagtac atagatgttc gcctactaaa aggttcaaac agtctgcagt      3480
     tgatagaaca ggtcgaatcg ttttttgcta gtttcggaat agccgaagaa attgtcaccg      3540
     ataatggtcc cccctttaac tccgaactgt tcgtgagatt cttggaagtg aatagtgtca      3600
     cagtctccaa atctccacct taccaccccc aatccaacgg gttggccgag agaggtgtaa      3660
     ggacagtcaa agatgtgctt aagaagtact tacttgacga taagcgacag tcgctttcga      3720
     ttggtaggaa gattaatcgt ttcctaatca actaccgtaa caccccttct acggttacaa      3780
     atcgtacgcc gtcgtccatg gtgtttgcgt atacgccgcg tacgccgacg aacatggtta      3840
     accctcgtaa agtcgagtta gagtccgtgc catcaaaacc tgtagtacga aataatgatg      3900
     atcgaatcat tcaatcccca ccagaaataa gaaatactta ccgtgctggt gataaggtat      3960
     tgtaccgcaa tcacttcaaa gatttagtcc gatggatacc cgcgatagtt ttgaaaaaac      4020
     ttagtccact cacgtactta ataagcgtag aaggaaacgt tcgaatggta cacgcaaatc      4080
     aaatccgtgt atcagacttg tcagatgtat tccatcctac cgtgccgatc gctcagccag      4140
     tgcaacaacg aatcgtggma aacgagcaaa gcaacaacaa agtcagtgcg ccatctgtgk      4200
     gttcgcgcga gaacctatcg caaccggcaa gcacaagctc atcgcagtcg acgaagcaag      4260
     caggcaagaa gaaaaagcac aacaaacgtc gacgaagcga gtcaaaatct cccaaggtgc      4320
     ggcgctcaga tcgcttgaaa ggacaaccga ggttgaagta tccgaaatga gtagaagata      4380
     aagtagagta agcttttcat atgtgatatg tttgatcgag tgattaattc acctagamgt      4440
     ttgtgtagct tttcttaagt gataagtatt ataacgtttt taaaaaatga tgtaatgtaa      4500
     atgtgattta aagcccggag agc                                              4523
//
ID   Gypsy-250_AA-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-250_AA_;
KW   Gypsy-250_AA-I; Gypsy-250_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-254
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1102-1102 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 254 BP; 75 A; 50 C; 48 G; 81 T; 0 other;
     tgtagtatat ctagatgagt tatggcaaat agtgttgcct taaacaatag ttaattgtac        60
     tgcgagttgc tatagaatta attatagcag ttaggttgct cagcacatgc tgacttccgt       120
     tcggtctctt tcctgaccga ccgtcgacca gtgcagacgc acaagaagaa atcgttagaa       180
     taataaatta atcaattagc agttatcaaa gtacagtctc gcgtgtgttt tcattacttc       240
     ctcccaacat ttca                                                         254
//
ID   Gypsy-251_AA-I repbase;    DNA;    INV; 4483 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-251_AA_;
KW   Gypsy-251_AA-LTR; Gypsy-251_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4483
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1103-1103 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3342-3812] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           921..4286
FT                 /product="Gypsy-251_AA-I_1p"
FT                 /translation="MEHNIPRSGSNRKRAFEDRINQLSAAMEDLKMSLAGE
FT                 TDSEDDQSVEEPSDEEQQSNYMNNVLLGKSDDSKPAFVELNVNGGNLLMEC
FT                 DTGACATICSFNTYKERFSKCSLMKDRRNFFVISGDTVSVVGKIIVRVKLQ
FT                 ERVLTLPLLVIKSPKNFVSLLGRDWLNAIWPHWRSIFSLNSLHEAKRDQWA
FT                 HRTVKQLKSDFASVFDDDLTEPIKNVIVDVRIDDQAKPIVHKPYTVAFKHR
FT                 EMVSSHLDDLESKGILEKVEYAEWASPIVVVVKPNKKDIRICMDGSKTINP
FT                 HIITHHYPLPVIDELITNKSGAKKFALIDLRGAYQQLVVSEASKKLMVINT
FT                 HKGLYAYRRLPFGVKPAATIFQSVMDKILQGIPNVQAYIDDILIWAKTDEE
FT                 LLASIKVVLNRLKEHNVKINAEKCKWFVSHVKYLGHILSEAGVSPNPEKVR
FT                 AITAVPEPKSKTQLKTFLGMITFYTKFVPKLSLILSPLYDLLKKDTKWCWD
FT                 AKCKNVFELSKTAICSAQVLTHFDPLKPITVTCDASDDGISGILSHKINNR
FT                 EMPVFFISRRLSNAEKKYPILHREALAIVFAMEKFYKYVLGQKVSIITDHK
FT                 PLLGIFNNKKGGPSVIATRLQRYFLRLSIFDFKLSHVSGRENQIADCLSRL
FT                 PIDQDMSLADLEESRRSSFNCLNYLIDDQKININSKIIAEKSMEDTVLSKV
FT                 LNYVQNGWPNSIKDRLVKHFFAKRHELDVESGCLIFGERIVIPNALKIPSL
FT                 QLLHANHRGIQKMKQIARKYLYWDGCGTDIENYVGSCKQCQILGIDRTPRV
FT                 YGNWPITKKPFERVHVDFFHKFNRTFLILVDAYSRWIEIRRMSKTNADNVA
FT                 HELDSIFTIFGFATTIVSDNGPPFNSFGFKKFCEARNIEHILCPPYHPASN
FT                 GLAERAVQTTKAVLGKLIRENDSCSSLQIDHEISKFLFHHHQTPTTEDNII
FT                 PNERIFSFIPRSQITGIRKQKSIFGEVVQSEEKNDLKANNMVIYTYKSNGR
FT                 AYSTEAKVVKQLSNMTYVIDIKGENRKVHRNQLKKILQKPFVLKNSNKNEQ
FT                 EQKLHDKPSVATTVKSKKERKSSKKTTKSVSNQVLRRSARIYKSKYKNLNV
FT                 GQLLKKKKQKNNNM"
XX
SQ   Sequence 4483 BP; 1597 A; 740 C; 939 G; 1207 T; 0 other;
     attctggcga cgaaggttaa aaattgataa gaacatagtt gggtgttcaa ttcgcgagct        60
     aaagcgagta ttttccgcga tttcggtggt gtcagtagta gcgtggttgt aagatgtcgt       120
     ttgctgaaga aagtggcagt aaagtgatgt tggtgcaatg gagaagagaa caaaaggaag       180
     atttcctgtg tatgtgccgg ggttaaatgt aagctcgtac ttgcaaactg tggatatatt       240
     ttttgcgttg aataaaactc ctaatgacga gaaagcgcta gagttcatca caagtgtggg       300
     ccaagaaacg gccaatcgta ttattggaag cttcaaaccg gataaaattg tgaataaaac       360
     atatgcgcaa atagtagaaa agttcaaaat tttgcatgaa gagaataaaa acgtgtttgc       420
     cgaacggcac cgtttaataa cacgtaagca agaagaaggc gaatcactag atgattttgc       480
     tatagatttg cagaacattg tggaacattg tagtgttagt gctgaaacag aggctacact       540
     agtacagtcg gtgttcgttg cgggtataag aaatgataaa acgcgagagt cgatgttacg       600
     agatgcagat cacagcttaa atctagccaa acttctggaa aaggctaaga cgatcgagat       660
     agcggctcag gagtcgcgaa aaatgtctaa gcaatgtgtt gaacatgtga actatgtggg       720
     accgatgagc tcagcgcgca tcaagaatgt agtgaaaccg ggaaaatttg acgatagtgc       780
     atggggtgga aaaacgcaga aggaaatttc aagctacaga gggaatcaaa aagtcagttc       840
     agacacggtg tgctataact gctacaacaa aggacatttg tcctaccact gcacgtttcc       900
     aaaggccaag aaaccgcgtt atggagcaca acataccaag gagtggttcg aataggaaac       960
     gagccttcga agatcgaatt aatcagctgt ctgctgcgat ggaagatttg aagatgagct      1020
     tagcaggtga aactgatagc gaagatgacc aatcagttga agaaccgtca gatgaagagc      1080
     aacaatctaa ctacatgaac aacgtgttgt taggtaagtc agatgactca aaaccagctt      1140
     ttgtggaatt gaatgtaaac gggggaaatt tgttgatgga gtgcgatacg ggcgcatgcg      1200
     cgactatttg ctcttttaat acatataaag aaaggtttag taagtgttcg ctaatgaagg      1260
     acagacgaaa cttttttgta atctccggcg atactgtgag tgtagtgggt aaaattatag      1320
     ttcgagtaaa actgcaggag agagttttaa cattaccact cttggtgatc aaatctccca      1380
     aaaattttgt atctctcttg ggaagagatt ggcttaatgc aatttggcca cactggagaa      1440
     gtattttttc gctcaattct ctccatgagg caaaaagaga tcagtgggca caccgcacag      1500
     taaagcaatt gaaatcggat tttgcatctg tgttcgatga tgatcttacc gaaccaatta      1560
     agaatgtaat agtggacgtt aggatcgatg atcaggccaa accaattgtt cataagccat      1620
     acactgtagc attcaaacac cgtgaaatgg tgagttcaca tttagatgat ttggagtcta      1680
     aaggcattct tgagaaggta gagtatgcgg aatgggcatc gcctatagta gtcgtagtaa      1740
     aaccaaataa aaaagatatt agaatttgta tggatggatc caaaacgata aacccccaca      1800
     ttattacaca tcattaccct ctcccggtta tagatgagtt gattacgaat aagagcggag      1860
     caaaaaaatt tgctcttatc gatttgagag gagcatacca acagctggta gtatcagaag      1920
     cttctaagaa gctaatggta ataaacactc ataaaggttt gtatgcgtat cgtagattac      1980
     cgttcggagt aaaaccagca gccacaattt ttcaatcggt catggataaa attctacaag      2040
     gcatccccaa cgttcaggct tacatcgatg acatactgat ttgggcaaag acggacgaag      2100
     aattattagc ttccatcaaa gtcgtactga ataggctgaa agagcataat gttaaaataa      2160
     atgccgaaaa atgcaaatgg tttgtttccc atgtgaaata tttgggtcac attctgtcgg      2220
     aggcgggagt atcgccaaat ccggagaaag tgagggcgat tacggccgtg ccagagccaa      2280
     aatcaaaaac acaactcaaa acatttctcg gcatgattac attctatacc aaatttgttc      2340
     ctaaattgag cttaattctt tcacctttgt acgacctgtt aaaaaaagat actaaatggt      2400
     gttgggacgc aaaatgtaag aacgtttttg aactgagcaa aacagctata tgtagtgctc      2460
     aagtacttac acatttcgat ccgttgaagc ccatcacagt gacatgcgat gcaagtgacg      2520
     atggaatctc tggaatcctc agccacaaaa tcaacaacag ggaaatgcct gtatttttta      2580
     tttctcgtcg attgtctaat gctgaaaaga aatatccaat attgcatagg gaagcattgg      2640
     caattgtttt tgcaatggaa aaattttata aatacgtttt aggtcaaaaa gtatcaataa      2700
     ttacggatca caaaccttta ttgggtatat tcaataataa aaagggagga ccttctgtta      2760
     ttgccactag actacaaagg tatttcctac ggctatctat attcgatttc aaattgtcac      2820
     acgtttcggg tagagaaaat caaatagctg attgcttgtc aagattgcca atagaccaag      2880
     atatgagttt ggcggattta gaagaaagtc ggcgaagctc attcaattgt ttgaattact      2940
     taattgatga tcagaaaatc aatatcaact ctaaaattat tgcggaaaag tcaatggaag      3000
     acacggttct ctcaaaagtt ttaaattacg tccaaaatgg gtggccaaat agcataaaag      3060
     atagattagt gaaacatttt ttcgcaaagc ggcatgaact agatgtagaa tccggatgtc      3120
     ttatttttgg cgaacggata gtaatcccaa acgcacttaa aataccatct cttcaattgt      3180
     tacacgctaa tcatcgtgga atccaaaaga tgaaacaaat tgctcgcaag tacttgtatt      3240
     gggatgggtg tggaactgat atagaaaact atgttggatc ttgcaaacaa tgccaaatct      3300
     taggaattga cagaacacca cgagtatacg gaaattggcc tataactaag aaaccttttg      3360
     agcgagtaca cgtagatttt tttcataaat ttaatcgaac ttttttgata ctagtcgatg      3420
     cttattcacg ttggatagaa attcgtagga tgtccaaaac aaacgcagat aacgtcgcgc      3480
     atgagctcga cagcattttc accatttttg gttttgcaac tactattgta agtgataatg      3540
     ggcctccgtt caatagtttc ggcttcaaaa agttttgcga agcgcgaaat attgaacata      3600
     tattatgtcc tccatatcac ccagcgagca atggattagc agaaagggca gtacaaacca      3660
     caaaagctgt tttggggaag ctaataagag agaacgattc ttgttcatca ttacagatcg      3720
     atcatgaaat cagcaaattc ctgttccacc atcatcaaac acctacgaca gaggataata      3780
     taatacccaa tgaacgtatt ttttctttta ttccacgctc tcaaataaca ggaattagaa      3840
     agcaaaaatc aatattcggt gaagtagtac aatctgagga aaaaaacgat ttaaaagcta      3900
     ataacatggt tatttacaca tacaaatcaa acggcagagc atatagtacg gaagcaaaag      3960
     tcgtcaaaca gttatccaat atgacatatg taattgatat aaaaggggaa aatcgtaaag      4020
     ttcatagaaa ccaattgaaa aaaattcttc aaaaaccatt tgttttgaaa aatagtaata      4080
     aaaatgaaca agaacaaaaa ttgcatgaca aaccctcagt agcaacaact gtaaaatcaa      4140
     aaaaagaacg gaaatcgagc aaaaaaacaa caaaatctgt ttcaaatcaa gtattacgta      4200
     ggtcagcaag gatttacaaa tcaaaataca aaaacttaaa tgttggacag ttgttgaaga      4260
     aaaagaagca aaaaaataat aatatgtaat tataagcaaa ctcttatgat tttttttttg      4320
     catgtattct aattagtcta aatgaataag aaaatgaact ttataaattt taagttaaac      4380
     aatgaaataa cgtgaattgc aatatattgt cataatgcaa atgctattga tgaaatgtag      4440
     aaacaaacat tgtaaatagg ttatattaat ttaaaggggg aga                        4483
//
ID   Gypsy-251_AA-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-251_AA_;
KW   Gypsy-251_AA-I; Gypsy-251_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-155
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1104-1104 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 155 BP; 48 A; 33 C; 31 G; 43 T; 0 other;
     tgagcaaatg tgctcatctc ttcaaccgag agccaaataa agattagcac tcagtgttaa        60
     gttgaaagcc ctatggtaaa gacgtatatg ctaactattg attccgaaac gccaagtgta       120
     ctatttcgca gtcgtatcag ttctcggtcg taaca                                  155
//
ID   Gypsy-252_AA-I repbase;    DNA;    INV; 4004 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-252_AA_;
KW   Gypsy-252_AA-LTR; Gypsy-252_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4004
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1105-1105 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3242-3697] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..3988
FT                 /product="Gypsy-252_AA-I_1p"
FT                 /translation="MKIKKHPSAPDKPNLRISLKRKKWPPRSNLAKFTAEQ
FT                 IERIATLRPIGRPRGTVSSQQYIGETFRMDSFKRPDTLELSGNVAEHWKKF
FT                 KQQLEFFMIAIGYDTKADKVKVATLLNLIGDDAVEVYNTFVFDDEEGRTYA
FT                 KVVEKFDAYCNPRNNEIYSRWKFYSRCQAENEPFEHFLTDLRTLVKDCCTL
FT                 EEDKMIRDRIIFGCHSTELRDKLITKDCTKDVTLNAAIEAARLDEVKRKQL
FT                 RLINRGSSSNVRVEAVDRSAVPPNVMPNRSIQSGSRDNRSIKQCEYCLTSH
FT                 AKGRCPAYGQQCRRCQKMHHYQRACRSRPVLNQEIRVESSDGSTRARDWGD
FT                 ADECNDVIVSSVVREMPPLSLVNIKKERWYADVKVENTVLRFKLDTGSDVN
FT                 FIPCDVFNKMCLNVKSKPIITFRAYGGVVYKPKAIVELKVCHNELELIDEF
FT                 WVTDVSTQPILGLTTCVRLGLLKRCSPNIDSVHCESTHDLVEKHRDVFEGV
FT                 GKFSEKCHLSLKSDAIPVQHPPRRIALALKEKLKRKLQEMEKSSIISRVDT
FT                 PTGWVHHVTVVEKPNGDIRVCLDPAELNAALRRDFYQIPTLEDLASALSGA
FT                 EYYTVLDLKDGFYHMELDDASSDICSFSTPFGIFKFLRLPFGLNVSAEMFQ
FT                 KWNEHFFGDLEGVIIYIDDILIYGRTREEHDRRLSAVLRRAAEINAKFNPK
FT                 KIQLRVRRVKYMGHLFSAKGMEPDPERTKAIIEMDMPNNTKALQRFLGTVN
FT                 YLRSFLPRLAEMTAPLRELLKKDTVFKWLPIHSDAVNNIKKSITTAPVLSI
FT                 FDEHKGLVIQSDASKCGLGACLLQDGKPLAYSSRSLSTSEQNYAQVEKEFL
FT                 AILFACKKYHHYIYGREVKVQTDHKPLVALMEKPVSKIHASRLQRIRMKLS
FT                 KYNLKLHYVPGKYMYLADFLSRAFIQSEEKISTSLDYVVHTINVSSDKLEE
FT                 FRKETSNDPILSKLLQVYRDGWPNDRSKLPDDLRYYWQFRDKLYEDGGLLF
FT                 MEEKLFVPSCMRRQMLQLLHETHGGITKTKKRAATIFFWPRMNQDIEDTVA
FT                 KCAVCEQFHRSNVKEPLLSLPIPQRCFEQLGSDFFEFGGKSFLMIADYFSK
FT                 WIHVAETKGKSAKDVCEVFRRTFCIFGVPKTIVCDNNPFNSVAVKDFCSNW
FT                 GCRVLTSSPNYPQSNGFSERCVQTVKRIMRKCTEDNVDFYYALLEYNNTPA
FT                 AGLSVSPAEILMSRSLRSKLPVAENRLKGMKDDVIREQLKENQQRYKQDYD
FT                 KSAHPRSEFEEGDLILAQDQATKKWVRGEILRKLDEPRSYVVKTNLANYRR
FT                 NSRFIRKRNT"
XX
SQ   Sequence 4004 BP; 1275 A; 743 C; 973 G; 1013 T; 0 other;
     tggcgcagcc ggtaataaag tgatgaaaat caaaaagcat ccatcggctc cggataaacc        60
     gaacctacga atttcgctta agcgaaaaaa gtggccgccc aggagtaatt tggcaaagtt       120
     tacggctgaa cagattgaac gaatagctac attgcggcca attggaagac cccgcggaac       180
     agtcagttcg caacagtaca tcggagagac attcaggatg gatagcttca agcgaccgga       240
     tacattggag ttatcaggaa atgtggcgga gcattggaaa aagtttaagc agcagttgga       300
     atttttcatg atagctattg gatatgacac gaaggctgat aaagtgaaag ttgcgactct       360
     tctgaacctg attggtgatg atgctgttga agtgtataat acgttcgttt ttgatgatga       420
     agaaggtcgt acgtatgcaa aagtggtgga aaaatttgat gcatactgca atccacggaa       480
     caacgagata tattcacgct ggaagttcta ttcccgttgt caggcagaaa atgaaccgtt       540
     tgaacatttt ctgaccgatc tccgcacttt ggtgaaagac tgttgtactc tggaggaaga       600
     caaaatgata cgggatcgca ttatctttgg ctgccatagt actgaactga gggacaagct       660
     tatcaccaag gactgcacga aagacgtcac attgaatgca gcgatcgagg cggcgaggct       720
     ggacgaggta aagaggaaac aactaaggct tatcaaccgt gggtcctcga gcaacgtaag       780
     ggtggaagcg gttgatagaa gtgcggtacc acctaatgtg atgcccaacc gttctataca       840
     gagtggaagc cgtgacaata gaagcatcaa acaatgtgag tattgcctaa caagccatgc       900
     taaagggaga tgtcccgcat atggacagca gtgtaggaga tgccagaaaa tgcaccacta       960
     ccagcgagct tgccgaagta gaccagtgct gaaccaagaa attcgcgtgg agagctccga      1020
     cggttcaacg agagcgagag attggggtga tgctgatgag tgcaatgacg tcatcgttag      1080
     ttcagtggta cgagaaatgc cgccactcag tttggtaaat attaaaaaag agaggtggta      1140
     tgccgatgtg aaggtagaaa atactgtgct gaggtttaag ctagatactg gatcggacgt      1200
     aaattttatt ccgtgtgatg tttttaacaa aatgtgtttg aacgttaaat ctaagcccat      1260
     aataactttt cgtgcatatg gaggtgtagt ttataaaccc aaagctattg ttgagttgaa      1320
     ggtatgtcac aacgaacttg aactaattga cgaattttgg gttacagatg taagcacaca      1380
     accgatacta gggctcacaa catgcgttcg gctaggacta ttgaagcgtt gttctcctaa      1440
     tattgactca gttcactgtg aaagcaccca tgatcttgta gaaaaacatc gagacgtttt      1500
     tgaaggagta ggtaaattta gtgaaaagtg tcatctttct ctaaaatctg atgctattcc      1560
     agtgcaacat cctccccgcc gtattgcgct agcgttaaaa gaaaagctaa aaaggaagct      1620
     acaggagatg gaaaagtcga gtatcattag tcgagtagat acaccaacgg ggtgggttca      1680
     tcatgtcact gtcgtcgaga aacctaatgg agatattagg gtgtgcctgg accctgctga      1740
     attgaatgct gcgttgagga gggattttta tcaaattcct accctggagg atttggcttc      1800
     agcgttaagt ggcgcggagt actacaccgt gttggacctt aaagatggct tttatcatat      1860
     ggaactcgat gatgcttcta gtgacatttg cagtttcagt acaccgttcg gtattttcaa      1920
     gttcctgcga ctaccatttg ggctaaatgt atctgccgaa atgtttcaaa aatggaatga      1980
     acactttttc ggagatctcg agggcgtcat catttatatc gatgacatat tgatttatgg      2040
     gcgaacccga gaagaacacg accgtcggtt aagtgccgtt ttacgtcgag ctgcagaaat      2100
     caacgccaaa ttcaacccga agaagattca actgcgagtg cgaagagtga aatatatggg      2160
     ccacctgttt tcggcgaaag gaatggaacc ggatccagaa cgtacgaaag cgatcatcga      2220
     aatggatatg ccaaacaata cgaaagcatt gcaacgattt ttgggaacag tgaactacct      2280
     tagaagcttt cttccacgtt tagcagaaat gactgcccca ctcagagagc tgctgaaaaa      2340
     agatacggtt ttcaagtggc tgccaattca ttcggacgcg gtcaacaata tcaaaaaatc      2400
     catcaccact gcaccagttt tgagcatttt tgacgaacat aagggtttag taatccaatc      2460
     ggatgcgtca aaatgtggac taggagcgtg tttgctccaa gatggaaagc cgctggcgta      2520
     cagttcaaga agcctttcaa ctagtgaaca gaattatgcc caagtggaaa aggagttttt      2580
     ggccattctt tttgcgtgca agaagtacca tcactacatt tatggaagag aagttaaagt      2640
     gcaaaccgac cataaacctc tagtagcgct gatggagaaa ccggtatcaa aaattcacgc      2700
     ctcaaggttg caacggatta ggatgaaact ttcaaagtac aacctaaaac ttcattatgt      2760
     gcccggcaaa tacatgtact tagctgattt tctttctaga gcgttcatcc agtcagaaga      2820
     aaaaatatca accagtctgg actatgtagt acacacaata aacgtttcga gtgacaaatt      2880
     agaggagttc aggaaggaaa caagtaatga tccgattctc tcaaagttgc tacaggtcta      2940
     cagagatggt tggcctaatg atcgttccaa actacctgat gatcttcgat attactggca      3000
     gtttagagac aagttatatg aagacggtgg gctgttattc atggaagaaa agctattcgt      3060
     gcctagctgt atgagacgac aaatgttaca actgcttcat gaaacgcatg gtggaattac      3120
     aaaaacgaag aagcgagcag caacaatttt tttctggccg agaatgaacc aggacatcga      3180
     agatactgta gcaaagtgcg ctgtttgtga gcagttccac agatcaaatg taaaggaacc      3240
     tcttctatca ctcccaattc cacaacgatg tttcgagcag ctgggtagtg attttttcga      3300
     atttggagga aaatcatttt tgatgatagc cgattacttt tccaagtgga ttcatgtagc      3360
     ggaaactaag ggtaaatcgg caaaggatgt ttgcgaggtg ttcagacgca cattttgcat      3420
     ctttggtgta ccaaaaacca ttgtttgcga taataaccct ttcaactctg tagcagttaa      3480
     agatttttgc tcgaactggg gatgtcgagt tcttacgagt agcccaaact atccacaatc      3540
     caatggattt agtgaacggt gtgttcaaac agtaaaaaga ataatgcgaa agtgtactga      3600
     agataacgtg gatttctact acgcgttgtt ggagtataat aacactccag cagctggcct      3660
     aagtgtatca ccagcagaga ttttaatgag caggagttta aggtcgaagt tgccggtggc      3720
     cgagaatcgg ctcaaaggaa tgaaggatga tgtcatcaga gaacaattga aggagaatca      3780
     gcaaagatat aagcaagact acgataagtc agcacatcca agatcagaat ttgaagaagg      3840
     cgacttaata ctcgcacaag atcaagcaac caaaaagtgg gtaagggggg aaatattgcg      3900
     aaaattagat gaacctagat cgtatgttgt gaaaacgaat ttagcaaatt ataggcgaaa      3960
     ctctagattt ataagaaaaa gaaatacttg aaaaagggag atgt                       4004
//
ID   Gypsy-252_AA-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-252_AA_;
KW   Gypsy-252_AA-I; Gypsy-252_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-130
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1106-1106 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 130 BP; 37 A; 27 C; 19 G; 47 T; 0 other;
     tgtatatgtg attgtagcct ttacttccca tttgtattct gtatacccga tgtctataat        60
     aaactagtct atactgtgca agcaaactgt ctacacgttt tctttagacg atccgtaata       120
     gatcacaaca                                                              130
//
ID   Gypsy-253_AA-I repbase;    DNA;    INV; 4574 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-253_AA_;
KW   Gypsy-253_AA-LTR; Gypsy-253_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4574
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1107-1107 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3435-3893] - Integrase core
CC   'CGATC' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..4487
FT                 /product="Gypsy-253_AA-I_1p"
FT                 /translation="MTEERTDGTDAIGGAAAAAAAAAPVIPPTFAFEAFDK
FT                 NKTRWSRWVKRFEGALQIFGIGEALKRNMLLHYMGTETYNVLCDHLSPEDP
FT                 EAKTYEEIVTLLGQYFDPEPLEMVELWKFRQRMQREGESVAEYITALQREA
FT                 KYCGFGDYLQKGLRNQLVFGLRNQRIRTRLIEEKDLTFDKAKQIALSMEAS
FT                 GEGAEVLNRRMQEVNLMDRKKLQPGRDAAVKVTNPTNKFMCFRCGSEAHLA
FT                 DKCEHKNKICGLCKKKGHLKRVCLSSNAQTSKIKNHPKKHSANLVDNSEVS
FT                 ESEGSDEERVYVVDVCKLEHCSNDMSKIFLNVRVGGALIQFEVDSGSPVSL
FT                 ISSTDKAKYLERLSMQPTDIELRSYCGNKIRVLGVIQAKVVYGGQMERLRL
FT                 FVVEGKRHPLLGREWMRALRLDWNDILGGTVSSVDKITLLNPLPAAVKGLI
FT                 EEFSSVFDESIGNIEGIQAALHFKSDSKPVFLKARSLPFSTRDAVEREIHS
FT                 MVESGVLVKVDRSEWATPVVPVMKSGGKIRLCGDYKLTVNKSLLVDEHPLP
FT                 TINEMFSNMAGGQKFTKLDLAQAYLQMSVRAEDQPTLTLNTHLGLYQPTRL
FT                 MYGVASAPAIFQREISQILQGIPGVTVFLDDVKITGPDDKTHLDRLREVLK
FT                 RFHERNMRVNVAKCEFFADSIEYCGYIVDQHGIHKMQQKVDAIQNMPRPEN
FT                 REQIRAFLGLVNYYGRFMENLSTRVYPINNLLKDKTPFEWTDACEQAFLWV
FT                 KSEMQSDRLLVHYDAKLPLVLATDASPYGVGAVLSHIYPDGSERPIQYASQ
FT                 TLNATQQNYSQIDKEAYAIIFGVRKFHQYLFGRKFILVTDNKPVVQIFSPD
FT                 KGLPTLCALRMQHYAVFLESFDFDIRYRPSKDHANADGMSRLPVTDRSIRN
FT                 HVEEIDVVQINQIETLPVDAKELGEITIRDRSVKELIQGLKSGRTVDGRFR
FT                 FGVDQKEFSMQGLCLMRGIRVYVPPPLRSRVLSELHTGHFGVSRMKSLARS
FT                 YCWWENIDRDIEEVARNCVDCARVRASPAKVQVHCWERPSEPFQRIHADFA
FT                 GPFMGLYFLIIVDAHSKWPEVKVIPDMTTETTIEKMREFFATFGLPSVLVT
FT                 DRGTQFTSDQFQKFLKKNGIVHKMGAPYHPATNGQAERYVQTFKDKIKALK
FT                 CPRSEVHVELQQILMAYRRTVHPATGKSPSMLVFGRQIKSRLDLLIPEQQN
FT                 SARKDFRGEEKPVRSFAINDRVAARDFMSQSEKWRFGVVAERVGKLHYMIE
FT                 LDDGRMWKRHIDQLKPGPVAQYLQPGEQNPENIQRRSEVLLPTQDYQAAVQ
FT                 VKVELDSTGQELEKTVDVPEQNTAISDTGRQSTPVSTAVNDTGPGSGEKGK
FT                 RSVNTRALIGNDGETVRKSRREIRAPRRLNL"
XX
SQ   Sequence 4574 BP; 1289 A; 936 C; 1228 G; 1117 T; 4 other;
     gttggcgacg agcggattag taatcccgca ttgaaagtat tcggccggcc atatcagaac        60
     cgtggcggag ctcccattga ggcgcgcgga cagcttggac gaggaggaga gatccggaca       120
     agtagcattc tgcattgggg ctcatcaaak cgaagtgata actgacaccc acaccactat       180
     acgttgttgc tgttttccgg tgaggggaaa cggagtacac atattwctgc tatagtgtac       240
     gtgctgctgc tactaccatc gtgtgcgttg gtatgcwgtg tgtgtgaggt gcgacgaagt       300
     gaaaaatgac ggaagagaga acagatggaa cagatgcaat cggaggcgca gctgccgctg       360
     ccgccgccgc cgctccggtc atcccgccta ccttcgcgtt cgaagcattc gacaaaaaca       420
     aaacaaggtg gtctcggtgg gtgaagcgat tcgaaggcgc actgcagatt tttggcatcg       480
     gtgaggctct gaagaggaat atgctgcttc attatatggg aaccgagaca tacaatgtgc       540
     tttgcgacca tttgtctcca gaagatccgg aagccaaaac ctacgaagaa attgttacgc       600
     tgctggggca gtacttcgac cccgaaccat tggagatggt tgagctgtgg aagttccgtc       660
     agcggatgca acgagaggga gaatccgtag cggaatacat cacggcgtta cagcgagaag       720
     cgaagtattg cggttttggt gattatctgc agaaaggact acggaatcaa ttggttttcg       780
     gcctccgkaa ccaacgaatt cgaaccagac tgatcgaaga aaaggatttg acgttcgaca       840
     aggccaagca gatcgcgttg tccatggagg cttccggcga aggagcagaa gtgctaaacc       900
     gacgaatgca ggaagtcaac ttgatggatc ggaaaaagtt gcagcccgga agagacgcag       960
     ctgtgaaggt aactaacccg actaacaagt ttatgtgttt ccgttgcgga agtgaggcac      1020
     acttggctga caagtgtgag cacaaaaata aaatttgcgg cctgtgcaag aaaaaaggcc      1080
     atttaaagcg agtgtgcctc agctccaatg ctcaaactag taagattaag aaccacccaa      1140
     agaaacattc agcaaacctg gtagacaata gcgaagtatc agagtcagaa ggctccgatg      1200
     aagagcgggt atatgttgtt gatgtgtgta agttagaaca ctgctctaat gatatgtcaa      1260
     agatcttcct aaatgtgaga gtgggtggag cgctgatcca gtttgaggta gacagtggat      1320
     ctccggtgtc gttgatcagc agtactgaca aagctaagta tttggagaga ttgtcaatgc      1380
     aaccaacaga tattgaactg cgtagttact gtgggaacaa aatcagagtt ctcggtgtca      1440
     tccaggcgaa agttgtgtac gggggtcaaa tggaacgctt gcgtttgttc gtagtggaag      1500
     gaaaacggca tccattgtta ggacgcgagt ggatgcgagc cttacggctg gactggaatg      1560
     atatcttggg gggcaccgtt agttctgttg acaaaattac tttgcttaat cctcttccgg      1620
     cagcagtcaa agggttgatt gaagagtttt cctctgtctt tgatgaatca attggtaaca      1680
     ttgagggtat tcaagccgct ttgcacttca aatcagattc aaaacctgtg tttctcaaag      1740
     cacgctcact tccgttttca actcgagatg ctgtggaacg ggagattcat agcatggtcg      1800
     aaagtggagt tctggtgaaa gttgaccgta gtgagtgggc tacaccggtg gttccggtga      1860
     tgaagtctgg agggaaaatt cgtctttgcg gagactacaa actaacggtt aataagagtt      1920
     tgctagtcga tgaacatcca ttacctacga tcaacgaaat gttttccaac atggcaggtg      1980
     ggcagaaatt cactaagctg gatttggctc aagcttattt gcaaatgtcc gtgcgtgctg      2040
     aagaccaacc aacgttgaca ttgaatacac acctgggtct gtatcagcca acaaggttga      2100
     tgtatggagt tgcttctgca cctgccatct ttcagaggga gatatctcaa atattacagg      2160
     gaataccagg agttacagta tttctagatg atgtgaagat cactggtcca gacgataaaa      2220
     ctcacttgga tcggctacgt gaggttttga aaaggttcca tgagcgcaac atgcgagtga      2280
     atgtggcaaa gtgtgagttt tttgccgaca gtatcgagta ctgtggatac attgtggatc      2340
     agcacgggat tcataaaatg caacagaagg ttgacgctat ccagaatatg ccgcgcccag      2400
     agaatcgcga acagatccgt gcgttcttag gtctcgtgaa ttattacggt agatttatgg      2460
     aaaacctaag cactagagtt tatcccataa ataacctact gaaagacaag acaccatttg      2520
     agtggactga tgcatgtgag caagcctttt tgtgggtgaa atcagaaatg cagtcggatc      2580
     gtttgctagt acattatgac gctaaactgc cgttggtgtt ggccacagac gcctcaccat      2640
     atggggttgg cgcggtactg agccatattt acccagatgg tagtgaacgg ccgattcaat      2700
     acgcttcaca gacactcaat gctacccagc aaaactacag ccaaattgac aaggaggctt      2760
     acgcgattat ctttggggta cggaaatttc accaatacct tttcggacga aaatttattc      2820
     tggtgaccga caacaagcct gtagtacaga tattttcgcc tgataaaggt ttgccgacgc      2880
     tatgtgcact gcgtatgcaa cattacgccg tttttctcga gtcatttgat ttcgatattc      2940
     gttatcgtcc ttcaaaggac catgcaaacg ctgatggaat gtcacgttta ccggttacag      3000
     accgtagcat ccgaaatcat gtggaagaaa tcgacgtggt tcagattaat cagattgaaa      3060
     cgcttccggt agatgctaaa gagcttggcg agattactat cagggaccgg agcgtcaaag      3120
     aactaattca aggactgaaa tcaggacgta ctgttgatgg ccgctttcgg tttggagtcg      3180
     accagaagga gttcagtatg caaggtttgt gcttaatgcg agggatacgg gtatacgtgc      3240
     ctccaccgct tcggagccgc gtcctcagcg agttgcatac cggtcatttt ggtgtctcca      3300
     ggatgaagtc attggcgaga tcttactgct ggtgggagaa cattgatcgg gacatagaag      3360
     aggtggctcg gaactgtgtg gactgcgctc gagttcgagc aagtcctgct aaggtacaag      3420
     tacactgctg ggaacgtcct tcagaaccgt ttcaaaggat ccacgctgat ttcgctggac      3480
     cgttcatggg gctgtacttc ctaatcatag ttgatgctca cagcaagtgg cccgaggtga      3540
     aggttattcc tgacatgact acggagacta ctattgagaa gatgagggag tttttcgcta      3600
     ctttcggact accatcagtt ttggtaacgg atcgaggcac acaattcacg tccgaccagt      3660
     ttcagaaatt tctgaagaag aacggaattg tgcacaagat gggagcgcca taccatcccg      3720
     cgacaaatgg tcaagcggaa cggtatgtcc agacatttaa ggacaaaatc aaagcactga      3780
     aatgcccgcg ctctgaagtc cacgttgagt tgcagcagat attgatggcg tatcgaagga      3840
     ctgtgcatcc tgccacagga aaaagtccat ccatgttggt ttttggaagg caaataaaat      3900
     ctagactgga tcttctgatt cccgaacagc agaactccgc tcgcaaagat tttcgggggg      3960
     aggaaaagcc ggtgcgctct ttcgcgataa atgatcgagt agctgcacga gactttatgt      4020
     cacaatcaga gaagtggaga tttggagttg tagctgagag agtcggaaaa cttcactata      4080
     tgatcgagct tgatgatgga agaatgtgga agcgtcatat tgaccaactg aagccggggc      4140
     ctgttgctca atatttacaa ccgggtgaac agaatccaga gaacattcag cgacgtagtg      4200
     aagtgttgtt gcccacccaa gactatcaag ctgctgtcca agttaaagtt gagcttgatt      4260
     cgactggaca agagctagaa aaaactgttg atgttcctga acagaatacg gcaatatcag      4320
     acactggaag acaatctacc cctgtcagta ctgcggttaa cgatacggga ccaggttcag      4380
     gggaaaaggg taagcggagt gtaaatacaa gagctttgat agggaatgat ggcgaaactg      4440
     tcagaaaatc tcgccgtgaa attagagctc cgcgtagatt gaacctgtaa tgtgttgtga      4500
     ctaacctact aaccaaatat atgtggatct gtagacactt acatgacagg atattactta      4560
     agggggggga gaga                                                        4574
//
ID   Gypsy-253_AA-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-253_AA_;
KW   Gypsy-253_AA-I; Gypsy-253_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-196
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1108-1108 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 196 BP; 55 A; 43 C; 32 G; 66 T; 0 other;
     tgttgtgatt cgtcttacct actctatatg taccttgaat tcgattcacc tatgttacac        60
     tacctgtcta tcaaactacc aaccatatga ctgtcaagag aaaatgaaat aaagtgtcat       120
     tctttgttgt gaacaagcac gagtaagacg ttatttattt gtctccgtga ttcggccaat       180
     ccctgcgttt acgaca                                                       196
//
ID   Gypsy-254_AA-I repbase;    DNA;    INV; 4811 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-254_AA_;
KW   Gypsy-254_AA-LTR; Gypsy-254_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4811
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1109-1109 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3838-4314] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           703..2562
FT                 /product="Gypsy-254_AA-I_1p"
FT                 /translation="MEMNGRPIPQFCCEQIERTKLAREWKSWKTSLEFYFE
FT                 AHEIHDQKMKRAKMLYLGGTQLQRVFTNLPDTDKVPLVAWEKRWYDTAIEK
FT                 LDEFFQPVRQDTLERHRLREMKQKHDERFAQFILRLRQQVADCGFEKHPPE
FT                 IAKVLTEITLIDVIVEGCSSSELRRRILKEDQTLEQIEALGAMLEGVEEQV
FT                 KGFSADQKMDDKVFKVTDNRPWNARPIRQDRGACFNCGNMGHWSKSAQCPA
FT                 TNQICRNCKQKGHFKSVCRAKKRMPPKVFNDHPDKRVRLIQTNENTVPDST
FT                 NDVQEKQYYAFYSGNQSNMIDCKIGGVKWEILIDSGADCNLISSRAWAMLK
FT                 DAKIQVHSSTKGCVRTLRAYGSQNPLSVLGSFVADIEIGQKRTTAEFFVVD
FT                 GGQQCLLGDTTSKELGVLKVGLNIQNVNEHPKPFAKISGIQIHIHMDPEVK
FT                 PVFQPLRKVPIPLEAAVNRKLDELLARDIIEVKVGPTTWVSPLVVVGKSNG
FT                 DPRLCLDLRRVNEAVLRERYPMPVVDEYLARLGKNMIRSKLDIREAFLQVE
FT                 LAPESRDCTTFITSKGLYRFKRLPFGLVTAPEAFQRTMDEILTGCEGTHWY
FT                 LDDVVIEGATIEEHDHRLQKVA"
FT   CDS           2779..4788
FT                 /product="Gypsy-254_AA-I_2p"
FT                 /translation="MQTKSDAIISFRRPTNETEVKSFLGLANYMNKFIPNL
FT                 ATIDEPLRQLTQKGVRFLWTERHTNAFEAIKQAMSQAVRLGYFDVNDRTLV
FT                 LADASPVGLGAILAQTDENNETRIVSYASKSLTDTEARYCQTEKEALSLVW
FT                 AVERFQVYLIGRAFDLVTDCKALHFLFAPRSRPCARIERWVLRIQAFDYNV
FT                 IHIPGEKNAADALSRLATMRSRPFDASEELIIREVASLAAGAVALSWVEIQ
FT                 NAYKEDEELKEVINFIEADRALELPLSYRLVANELCVVDGVLMRIDRVVIP
FT                 SKLRNTVLRLAHDGHPGSNMMKSFLRSSVWWPKMDRNVEEFVRECRGCNLV
FT                 SAPEAPEPLVRREMPNGPWQDVAVDFLGPLPDGQHLLVVVDYYSRYVEIRE
FT                 MASTSATATVHELSAIFALFGLPITLRADNGPQFSRECEEFSSFCQENGVR
FT                 LINTVPYWPQHNGEVERQNRSILKRLRIAQQLGKDWKMELTKYLLVYHSTN
FT                 HPTTGKSPAELMFGRRIRTKLPQVPLFKTDDEEVRDKDREQKQKGKEYADV
FT                 KRKARFSEISVGDCVLMKRMKKSNKLDSEYLNEEFIVTRKVGMDCTIKSKL
FT                 SGREFRRSVAHLKRLEPTNDGNDKRSDSTSTSYSDTSPLPKADKPSMSNVG
FT                 AEPFRKRICREPRRFQDYVSH"
XX
SQ   Sequence 4811 BP; 1471 A; 898 C; 1205 G; 1237 T; 0 other;
     attggcgaga ggattggcgg aaaaaaaaac taattggagg taggaaacat aatcttattc        60
     taatttcttt tttagcttac tcggacaaaa taactattaa aaaggtgact gatgttaatt       120
     ttgaagaaaa ttaaaacgtg attcagttgt ggaacatgaa aaagaaaaaa aaaagttctc       180
     tgacgtgaag agtggtgaaa cgattttgag gttaaaaaaa aaccgcaacc gggaggttgg       240
     aatttagaaa acagtccaca accgggaggt taagttccac aatcgggaga ttgaaatccg       300
     cgaccgggag gttggttcga ttagattgat ttatataagc tgaagtccac aaccgggagg       360
     ttgagatcca caatcgggag attgaaatcc gcgaccggga ggttggtatt ttgatctgat       420
     agcaaacgta aacaaaagca atggtttgaa actgcatccg ggaggatgag tttttcaatg       480
     tatacagcgc atgctgaggt ggaataaggg tgtgtatcat tcggtgaagt ttccacgcag       540
     tgagattttt tttacttttc gaaaaaaaaa gccaatctgg ctaaccggat tgagtttata       600
     catggtttaa ttggaagcaa gcgagttctg aaaagagttg ttgaaaagga aaaaaattct       660
     gcatacacac ttatatgtgt actattttct gttctgttac agatggaaat gaacggacga       720
     ccgattccgc agttttgttg cgaacagata gagcgcacga aattggcacg ggaatggaag       780
     tcgtggaaaa cctcgctcga attttatttc gaggcgcatg aaatccatga ccagaagatg       840
     aagagagcga agatgttata tcttggaggt actcagctgc agcgtgtttt cacaaaccta       900
     ccggacacag ataaagttcc attggtggca tgggagaaaa gatggtacga cacagcaatc       960
     gaaaagttgg acgaattctt tcaacctgtt cgccaggata cgcttgaacg acatcggtta      1020
     agagagatga agcagaaaca cgatgaacgg tttgcgcaat ttattttgag gttgaggcaa      1080
     caggttgcag attgcggttt tgagaagcat ccaccggaaa ttgctaaggt gttgacagaa      1140
     ataacactaa tcgatgtgat cgtcgaaggt tgctcctcat ccgaactgcg acgtcgaatc      1200
     ctgaaggaag atcaaacttt ggaacaaatt gaggctcttg gtgccatgct tgaaggggtt      1260
     gaagagcaag tcaaaggatt cagtgctgat caaaagatgg atgacaaggt attcaaagtg      1320
     acggacaaca gaccttggaa tgcacgccct attcgtcaag atagaggagc ttgtttcaat      1380
     tgtgggaaca tgggacattg gtcaaagtcg gcacaatgtc cagctacgaa ccagatatgc      1440
     cgaaattgca aacaaaaagg ccacttcaaa tcagtttgtc gggctaaaaa gcgtatgcca      1500
     ccaaaagtat tcaacgacca cccagataag cgagttcgtt taattcagac gaacgagaat      1560
     actgtacccg attcaaccaa cgatgtacag gagaaacagt attatgcgtt ctattcagga      1620
     aatcagtcca acatgattga ctgcaaaatc ggaggcgtaa aatgggaaat tctcattgat      1680
     tctggggccg actgcaacct gatatcgtcg cgtgcctggg caatgttgaa agatgcaaag      1740
     atccaagtac actcatcgac gaaaggctgt gttagaacat tgcgggctta cggaagtcag      1800
     aaccctttga gcgtattggg aagtttcgtt gccgatatcg agattggtca gaagcgcact      1860
     accgcggaat ttttcgtggt agatggaggt caacaatgcc tgttaggaga caccacttct      1920
     aaagaacttg gtgtgcttaa agttggactg aatattcaaa atgtgaatga gcaccctaaa      1980
     ccgtttgcga aaatctctgg tattcaaatc catattcata tggatccaga agtgaagccg      2040
     gttttccaac cactacggaa ggtgcctatt cctttagaag cagctgtgaa ccggaaattg      2100
     gacgaacttc ttgcgcgaga tatcatcgaa gttaaggtcg gaccaactac atgggtatca      2160
     ccacttgtgg tggtcggtaa atctaacggc gatccgagac tgtgcctgga ccttcgccgt      2220
     gtcaatgaag cagtccttcg agaacgttac ccgatgcccg tggtagatga atatcttgct      2280
     cgcttgggaa aaaatatgat tcggagcaag ttggacatca gagaagcatt cctacaggtg      2340
     gaacttgcgc cggaatcaag ggattgcaca acgtttataa caagtaaagg actttatcga      2400
     ttcaaacgcc ttccgttcgg ccttgtcaca gcacctgaag cgttccagag gacgatggac      2460
     gaaatactga ccggctgcga aggtactcac tggtacttgg acgacgtggt tatcgaggga      2520
     gctactatcg aggagcacga tcatcgattg caaaaggtag catgactcga ttgatttgaa      2580
     gcttgttttt tttgttatgc agacaataaa tcaaattgaa ataaatgttt ttttttattt      2640
     catctaaaaa aacaatcatc ataggtgcta aaacgattcg aagaccgtgg agtggagcta      2700
     aattggcaga aatgtgtatt caaagcgaca gagcttgatt tcttgggaca taacatcacg      2760
     tcggatggta tatttccaat gcaaacaaaa tcggatgcca taatatcgtt ccgtagaccc      2820
     acgaatgaaa cggaagtgaa gagtttctta ggcttggcga attatatgaa taagttcata      2880
     cctaatttag ccacgatcga cgaaccatta agacaattaa cacagaaggg tgtgcgattc      2940
     ctgtggactg agcgacacac caatgcattc gaggcgataa aacaagcgat gagtcaggca      3000
     gttagactgg gatatttcga tgttaatgac cgtacccttg tattagcaga cgcgagtcca      3060
     gtcggactgg gtgctattct agcgcaaacg gatgagaata atgaaacacg tattgtaagc      3120
     tacgcttcga aatctctcac ggatacagaa gctaggtatt gtcaaacgga gaaggaggcg      3180
     ctttctctag tttgggccgt ggaacgtttt caagtgtact tgattggtag ggcatttgat      3240
     ctcgttacgg attgcaaggc cttacacttt ttgtttgccc ctcgttcaag gccttgcgca      3300
     cgcattgaac gttgggtatt acgtattcaa gcattcgatt ataacgtaat ccacattcct      3360
     ggggagaaga atgcagcaga tgccctatct cggttggcaa cgatgagatc acgacctttc      3420
     gacgcctctg aagagttgat tatccgagaa gttgcttctt tagctgctgg agccgtagca      3480
     ttgtcgtggg tagaaatcca gaacgcgtac aaagaggatg aagaattgaa ggaggtcatc      3540
     aactttatag aagcggatcg cgcactcgag ttgcctttat cttatcgttt agtagctaat      3600
     gagttatgcg tagttgatgg agttctgatg cgaatagaca gagttgtgat tccgagcaaa      3660
     ctgcgaaata cagtacttcg cttggcacac gatgggcacc cgggcagtaa tatgatgaaa      3720
     tcttttttgc gatctagtgt atggtggccc aaaatggacc gtaacgtaga agagttcgtt      3780
     agagaatgtc gtgggtgtaa tttggtttca gctcctgagg ctccagagcc acttgtgaga      3840
     cgcgaaatgc caaacggtcc ctggcaagac gtggctgtgg attttttagg tcctctacca      3900
     gatggacaac atttgctggt tgtcgttgac tactacagtc gttatgtaga gattcgtgaa      3960
     atggcatcta cgagcgcaac tgctaccgta catgagttga gtgctatctt tgcgctattc      4020
     ggcctaccta ttacgttgag agcagacaac ggaccacagt ttagcagaga atgtgaggaa      4080
     tttagttctt tttgtcaaga aaatggcgtt agattaatca acacggttcc atattggccg      4140
     cagcacaacg gcgaggtcga aagacaaaat aggtcgatcc taaagcgtct taggattgct      4200
     caacaactgg ggaaggattg gaagatggaa ctcacaaaat acttgttggt gtaccattct      4260
     accaaccatc caacgacagg aaaatcacca gcagaattaa tgtttggccg acgtattcgt      4320
     accaaattac cacaggtccc attatttaag actgatgatg aagaggttcg cgataaagat      4380
     cgagagcaaa agcaaaaagg gaaggaatat gcagatgtga aacggaaagc tcgttttagt      4440
     gaaatatcgg tgggagattg tgtgcttatg aaacgtatga agaagtctaa caaattagac      4500
     tcggagtatt taaatgaaga atttattgta acacgaaaag tgggaatgga ctgtacgatc      4560
     aagtcaaagt tgtcgggaag agagtttcgt cgaagtgttg ctcatttgaa acgattggag      4620
     ccaacaaatg atggcaacga taaacgcagc gatagtactt ctacctccta ctcagataca      4680
     tctccattgc cgaaggctga taaaccctct atgtctaatg tgggtgccga accgtttcga      4740
     aagagaatct gccgagaacc tcgtcgtttt caggattacg tatcgcatta aatattaaag      4800
     ttaaggtgga t                                                           4811
//
ID   Gypsy-254_AA-LTR repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-254_AA_;
KW   Gypsy-254_AA-I; Gypsy-254_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-144
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1110-1110 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 144 BP; 47 A; 21 C; 37 G; 39 T; 0 other;
     tgtagtggtg gagctagcag attaccgtac cttaagcagt gaacgttgtg tatatgatac        60
     ctgaaaatat aaagagactt tgcaatagaa agtggtatta ttatctgagc gacgaacagt       120
     gacggttgat atcgggacac taca                                              144
//
ID   Gypsy-255_AA-I repbase;    DNA;    INV; 5013 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   19-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-255_AA_;
KW   Gypsy-255_AA-LTR; Gypsy-255_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5013
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1111-1111 (2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           710..4876
FT                 /product="Gypsy-255_AA-I_1p"
FT                 /translation="MSGNIVGSIEHYVRGTSFSNYAERLKFIFEYNKVPEE
FT                 SQKSLFITLSGPAVFEELKLLYPATNISTLNYTDIIKKLQERFDKKEPDLI
FT                 QRYKFYNRSQTQFETAENFVLEVKLQAEFCDFGEFKDIAIRDKLVMGVYDE
FT                 ALQQKLLGEEKLTLATAERMIVNWELAGERAKMISNKVQTNGVGSVRARLG
FT                 HVPAKPKNNEDEHFDDRFQRSRGRDRNWNGGRSYNRASGEYRSRSRSGSRY
FT                 RNYADRQRTELVCYYCGKRGHMVKKCFKYINDQRKPAVKFADAKEPENNLE
FT                 DLFDRFKTNLEDSSEDESGELFCMMVNSNTNLNEPCLTNVLVEGKKVKMEI
FT                 DCGSSVTIMGKQLYNRMFDMPVEKFSKKLVVVNGANLTIKGKVHVEVVLNG
FT                 SIKHLDLIILDSNNDFLPLLGRDWLDEFFPQWRNAFSNSLFVRNINEERQK
FT                 EAAIVAVKQKFSSVFHKDFSSPIVGYEADLVLKEDSPIFKRAYEVPYRLQD
FT                 KVVEHLETLEQQNVITPIKTSEWASPVVVVIKKDQQIRLVIDCKVSINKLI
FT                 IPNSYPIPIAQDIFAKLSGCKVFCSLDLEGAYTQLSLSEKSRKFVVINTIK
FT                 GLFRYNRLPQGATSSAAIFQQVMEQVLEGLKYVSVYLDDVLIAGTDFADCC
FT                 EKLHTVLDRLSKANIKVNWSKCKLFVSNLPYLGHVITENGLLPCPEXNNTI
FT                 SKAPVPKNVNELKSFLGLINYYGRFIPKLSPRLHCLYNLLKKDVSFMWDNK
FT                 CEQAFQNSKRQLLDANILEFYDPNKPIIVVTDASGYGLGGVIAHVENGIEK
FT                 PISFTSFSLNKAQRSYPILHLEALALVCCVKKFHKYLYGKTFTVYTDHKPL
FT                 VSIFGKPGRNTLYVTRLQRYVLEMSIYDFEIAYRPSGQMGNADFCSRFPLE
FT                 QMVPKENDQEFVKNINFSQEFPVDFSLVATETKQDCFLQKVISYYQHGWPE
FT                 RIDKELLNIFSNQHDLEVINGCLIYQDRVVIPTSMQKGILKLLHCNHSGIV
FT                 KMKQLARRSVYWFNINADIESYIRNCDPCNRMLITPKEKVETKWIPTNRPF
FT                 CRIHADFFYLNQKVFLIIVDSFSKWIELEWMKYGTDAERVIRKFVALFVRF
FT                 GLPDVVVTDGGPPFNSHAFVSFLEKQGIKVMKSPPYHPASNGQAERSVKLV
FT                 KEVLKKFLLDKEVMNLQMEDQINLFLINYRNTCLTKEGSFPSEKVFNYTPK
FT                 TMLDLINPKKAYVPKINNDANNSEVGVNPKTTSNRTRSMATVDPIFKLKTG
FT                 ETIWYKNNNSKDFTRWVEAKFVRPCSPTVFQILIGNVVAKAHRGQLRVPKT
FT                 VAKPPPLNLTTPCRKNYKRARSISNEEDFPGYGEDDVATRKRRGLEVEKEG
FT                 AGNEGVISPVVRRSKRLLEKNKTRTP"
XX
SQ   Sequence 5013 BP; 1687 A; 801 C; 1113 G; 1411 T; 1 other;
     aatactaaaa gtgactacga ggaaaaagga gaatcgcgtg tgaagtgtta tagtgaaaac        60
     tattagaaga aagatagtgg ctctaaagaa gatattgtat ggtgagcaac aaaggttgtc       120
     gcaacaaagg tgattaaaag aaaagaaaag tgttttagaa ataaattgaa agggaaagaa       180
     aagaaattag agttgcaaag gcacaaatta aattctagag gtcatctcgg tcattccgtt       240
     acaaaggtaa caaaaagcgt tgctgggttc taagtgagtc acgctggtga cattttgttt       300
     tctagataaa aaaaaaggat cttcagaggg ctgagggctc caacgggaga aaagtgattt       360
     taccctggtt ccctagtgaa tatttcaacg ccagacctgg cagtggaaag tgtgaatttg       420
     tgaaaacgaa gccattaaaa gtaatcgcta agccaaagat tggtggataa ggtcattaga       480
     agcagattgg atcccagtgt ataggagatc cattactgga ttatagtggt ggtacagcga       540
     gcaggtgtgt gagctgtgag atcgagtttg gcgcttcaag gtggtgagac gtgagtttcc       600
     tctttggtga gtgattctta tataccatat accctataat ttgctctgat tgtgtatcaa       660
     ctagctgagt ttttttttct ctctgcgttt gttttgattt tctaaggaga tgagtggaaa       720
     cattgttggt tctattgagc actatgtgcg tggcacgtct tttagcaact atgctgagag       780
     acttaaattt attttcgaat ataacaaagt accagaagaa tcgcaaaaat cattgttcat       840
     taccttaagt gggcccgctg tttttgaaga gctaaaattg ctttacccgg cgacgaatat       900
     ttcgactttg aattataccg atataataaa aaaattgcaa gaaagatttg ataaaaaaga       960
     gccggatttg attcagagat ataaatttta taatagatct caaacacaat ttgaaactgc      1020
     tgagaatttt gtattagaag tgaagttaca agcagagttt tgtgactttg gggaatttaa      1080
     ggatatagct atccgtgata aactagttat gggtgtttat gatgaagcat tgcagcagaa      1140
     attattaggt gaagagaaat taactttggc aacggccgag cgtatgattg taaactggga      1200
     attagctggg gagcgcgcca aaatgatttc gaacaaggtt caaacaaatg gcgtaggatc      1260
     ggtgcgagca cgccttgggc atgttccagc taagcctaaa aacaatgaag atgagcattt      1320
     tgatgatcgt ttccaaagaa gccggggcag agatcgaaac tggaatggtg gtcgctctta      1380
     caatagggcg tctggagagt acagaagcag aagtaggagt ggatcaagat atagaaacta      1440
     tgctgataga cagagaaccg agttggtttg ttactactgt ggaaaacgag gacacatggt      1500
     gaaaaaatgc ttcaagtata tcaacgacca gcgcaaacca gcagtgaaat tcgctgatgc      1560
     aaaagaaccg gagaataatc ttgaggattt gttcgaccga ttcaagacga atttggagga      1620
     ttcttcggag gatgaatcag gtgaactatt ttgcatgatg gttaacagta acactaattt      1680
     aaacgagcca tgtttaacga atgtactagt tgaaggcaaa aaggtaaaaa tggagataga      1740
     ttgtgggtcc tcagttacga taatgggaaa gcaattatac aataggatgt tcgacatgcc      1800
     agttgaaaaa tttagcaaaa agttggtagt agtgaatggc gcaaatttaa ccataaaagg      1860
     taaagttcac gttgaagtgg ttttaaatgg ttcgattaaa catttagatt tgattatttt      1920
     ggacagcaat aatgattttc tgccattatt agggcgtgat tggttggatg aatttttccc      1980
     tcagtggaga aatgcctttt caaactcctt atttgttagg aacatcaacg aagaacgaca      2040
     aaaggaagct gctattgttg ctgtaaaaca aaagttttct agcgttttcc ataaagattt      2100
     ttcgtcacca atcgtaggct atgaagcaga cttggtgctt aaagaagact cgcctatttt      2160
     caaaagagct tatgaggtac cgtacagact gcaggataag gtggtcgagc atttggaaac      2220
     gttagaacaa caaaacgtca taactcctat taagaccagc gaatgggcct cacctgtggt      2280
     cgtggtcatc aaaaaggatc agcaaataag attagtaata gactgcaaag tttctattaa      2340
     taaacttatt atacctaact catatcctat tcctattgcc caagatattt ttgctaaatt      2400
     gtcagggtgc aaagtttttt gttctttgga cctagaaggg gcctacactc aactctcttt      2460
     gtctgaaaag tctagaaaat ttgtcgtcat aaatacaatc aaaggattgt tcagatataa      2520
     tagattacca cagggagcta cgtcaagcgc agccattttc cagcaggtta tggagcaagt      2580
     acttgagggt ttaaaatatg tatcagtata tttggatgac gttctcatag cgggaactga      2640
     ttttgcggat tgttgcgaga aactccatac ggtacttgac agactttcaa aagctaacat      2700
     taaagtaaat tggagcaagt gtaagctctt tgtatcaaat ttgccatatt taggccatgt      2760
     tatcacagaa aatggtttgc tgccttgtcc agaamaaaat aatacaatta gcaaagctcc      2820
     agtgcccaaa aatgttaatg aattgaaatc gtttttgggc cttatcaatt attatggaag      2880
     atttattcct aagttgtcgc ccaggctaca ctgtttgtac aatttgttga aaaaagatgt      2940
     gagtttcatg tgggacaaca aatgcgagca agcattccaa aacagcaagc gacaactatt      3000
     agatgcaaat atattagagt tttatgaccc gaataaacct ataattgtag tgacagatgc      3060
     gtctggatat ggtctcggtg gagttatagc acatgttgaa aatggcattg aaaaaccaat      3120
     tagcttcact tcattttctt tgaacaaggc acaacgttcc tatcccattt tacatttgga      3180
     ggcattggct ttagtatgct gcgtgaagaa gttccataag tatctttatg ggaaaacatt      3240
     cacagtgtac acggatcata agccacttgt gtcaattttt ggaaaacctg gaagaaatac      3300
     gttatacgta actagactgc aaagatacgt cttggaaatg tcaatatacg attttgagat      3360
     tgcttatcga ccgtcaggac aaatgggcaa cgctgacttc tgttctcgct tcccactgga      3420
     acagatggtg cccaaagaaa acgatcaaga attcgttaaa aatataaatt ttagtcaaga      3480
     atttcctgtt gatttctcat tagtagcaac agaaacgaag caggattgtt ttttgcaaaa      3540
     agtaatatct tattatcaac atggatggcc tgagagaatt gataaagaat tattaaacat      3600
     attttcaaac cagcatgacc tggaagttat taacggatgc ctaatatatc aagatagggt      3660
     agttattcca acatccatgc aaaagggaat tctgaaattg ctacactgta accacagtgg      3720
     gattgtaaaa atgaaacaat tggcacgaag gtctgtgtac tggtttaaca tcaacgcaga      3780
     cattgaatct tatatacgta attgtgatcc gtgtaacaga atgttgataa ctcccaagga      3840
     aaaagtagaa actaaatgga ttcctaccaa tcgaccgttt tgtcgcatcc acgcagattt      3900
     tttttacctt aatcaaaaag tatttctgat cattgttgat agtttttcaa agtggataga      3960
     gttggagtgg atgaaatacg gtacagacgc tgagagagtg attcgtaagt ttgttgctct      4020
     gttcgtccgc tttggtctac cagacgtagt agttactgat ggagggcctc cattcaattc      4080
     tcatgcattt gtatcctttt tggagaaaca gggaattaaa gttatgaaaa gcccaccata      4140
     tcatccggca agcaatggac aagcagaaag gtccgtaaaa ctagtaaaag aagtgcttaa      4200
     aaagttcctg ttagacaaag aagtaatgaa cctacaaatg gaagaccaaa tcaatctatt      4260
     tcttattaac tacagaaata cctgtttgac gaaggaggga agtttccctt cggaaaaagt      4320
     gttcaactat acacctaaaa ctatgttaga tttgataaat cctaagaaag catatgtacc      4380
     aaaaatcaat aacgatgcta acaatagtga agttggtgtt aatccaaaga cgacgagtaa      4440
     tcgaactaga tccatggcta ccgtagatcc tatattcaag ctaaaaacag gggaaacgat      4500
     atggtataaa aataacaatt caaaggattt tactaggtgg gtagaggcta aatttgtaag      4560
     accatgttct ccgactgttt ttcagatctt aattggaaac gtggtggcaa aggcccacag      4620
     aggacaatta agggttccta agacagtagc gaagccacca ccgctaaacc tgacgactcc      4680
     atgcaggaag aactacaagc gtgcccgttc gatttccaat gaggaagatt tccctggata      4740
     tggagaagat gacgttgcga cacgaaagcg tcgtggtctg gaagtcgaga aagaaggggc      4800
     cggaaacgaa ggtgtaatat ctccagtggt acgaaggtcc aaacggctat tagaaaagaa      4860
     taagacaaga actccttgaa ttctataacc gatataagcg taagacgcat tcgagttgaa      4920
     taataaatga attgttagat ctgaaatatt gtgagcaatc aaaatatcta agtgcattaa      4980
     aatgcattcg gaatctttta taggggtgag aat                                   5013
//
ID   Gypsy-255_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-255_AA_;
KW   Gypsy-255_AA-I; Gypsy-255_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1112-1112 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 226 BP; 76 A; 40 C; 41 G; 69 T; 0 other;
     tgtggagtcc atgaaatgac cagatagaag tataaccctt ttatctattt atgatacaaa        60
     cacatgagaa tgaagtggtg tgctatgaac acatatttgt tatatacaaa ctctgaataa       120
     ataccgctct cgacgttcag tcgagttagt tgattacttg catccaaagt gaaaggctgt       180
     tttactgtta aaccgtaaga aaactctaat aaggtctctg acctca                      226
//
ID   Gypsy-256_AA-I repbase;    DNA;    INV; 5116 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-256_AA_;
KW   Gypsy-256_AA-LTR; Gypsy-256_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5116
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1113-1113 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [2478-3011] - Reverse transcriptase
CC   Positions [4098-4559] - Integrase core
CC   'GAAGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..1545
FT                 /product="Gypsy-256_AA-I_1p"
FT                 /translation="MDGSKAFSNLPPFSFAGVELTDRRQKWHTWKRGFEIC
FT                 LRTAKIKDATEKKDILLGQGGFELQEIFFNIPGADVSEDKENNIDPYDVAI
FT                 SKLDDYFAPQRHEVHERYIFWAMKPEQGETLSKFIMRTQIHASKCDFGKSA
FT                 SESADKAVVDKTLQFAPAHLREKLLQVADLTLEEAIKQVNAYETSQAASDQ
FT                 ISGQSVPNQQVKTEYVQRVAARCRFCGKSHGPQQQCPAWNRSCSFCGKRGH
FT                 FQAVCFDKPSTSSGTPPGGIGKVAPKRTMPVYVKGSYDKHSSTQPKPFAKH
FT                 PRKPVYRQLNAIEDSSMEEIVIMCQIFMHLNCWYDKHRQIRPGKLYGAPGK
FT                 LKRVRKDKMAVTKF"
FT   CDS           1941..4886
FT                 /product="Gypsy-256_AA-I_2p"
FT                 /translation="MVWSEKERDELLWAEVGGVLIEMQIDSGVQSNIIDDS
FT                 TWKMMTTNGVQTVGGTQRADRKFKAYAQKDCLEVPHMFEAEIVVHDKQKVL
FT                 KAMARFYVVKDGPQPLLGKRTAIELGVLIVGLPSQHESIHSVKVGQPFPSV
FT                 RGIKIHLPVDNSVTPVAQRLRRLPFATLERVEEKSDELLSKDVIEKVSGPS
FT                 KWVSPMVIVVKDSGDIRLCIDMRRVNKAVLRETHPLPTLEDIRWKLNGATY
FT                 FSRLDIREAFHQLELDEESRPITTFITHKGLYRYKRLVFGISCAPEMFQKV
FT                 MEQILADCECAVNFIDDIIVFGKTEKEHDESLEKVLSKMRDYGILLNHEKC
FT                 AFKLNEIDFLGHHFDANGMIPAHSKVEAIKTFRTPANAEEVRSYLGLVNYV
FT                 GAFIPDLATISFPLRELTKNKAEFKWGKDEQKAFEQLISLISNVETLSHFD
FT                 PNLKTRVVADASPVGLGAVLLQFPDENPRVVMYASKSLTETERRYAQTEKE
FT                 ALALVWAVERFQIYLIGIRFDLETDHKPLEAIFSPDSTPCLRIERWVLRLQ
FT                 AFSYDVVYRKGKSNIADPLSRLSQPTEIEPFDPDSEVYIRNVVELAAVDID
FT                 ELENASAKDIEICELREFLDRGVWNYTSEIIKPYHFLRNELGKVGDLVVRG
FT                 SRLIVPKCLRERMVHLAHEGHPGRTKMQQRLRNTCWWPGMDEAILRVVDSC
FT                 EGCRVVSQPNRPEPMVRRQLPESPWIDVAIDFLGPLPSGDYLLVIIDYFSR
FT                 YKEVEVLRKITASETIDRLEKIFVRLGYPRTITLDNGRQFVSLEFEKYCKN
FT                 RGIVLNKTTPYWPQENGLVERQNRSLIKRLKISQALKQDWKQDLLTYLSMY
FT                 YSTPHSTTGKTPSELMFGRNIRTKLPSLQDLATAVMPTDYRDRDLEAKEKG
FT                 MEAENVRRKAKVSEIKVGDKVLMKNLLPGNKLTPTFNPAVLTVIEKQGPRV
FT                 TVQNTVTKKSYDRNSSHLKRLPSQEEF"
XX
SQ   Sequence 5116 BP; 1573 A; 987 C; 1290 G; 1259 T; 7 other;
     aattgacgac gaggctggct gtttatcggg waaataagag ttcttgtggt ttaataaatt        60
     cgttaacatt cgaggtaagt tggatttatg cggaataatt cacgataatc atcaaaactg       120
     atggtttgta tagattgttt tggctaccgc gacgagtcag cggcaattgg ctaccacgac       180
     aagacagtgg gctatcgcga cgtgaaagcg acaattggtt accgcgacgt gaaagcggag       240
     attggctacc acgacgagag agtggcatag agctatcgcg acgtggaagc gacgattggc       300
     taccgcgacg tggaagcgga tgttggctac cgcgataaga cagcggcgaa cggctaccgt       360
     gacgtgataa cgggtattgc gaagtcgtag atgattgatt gagattgtgg ctacaaaagg       420
     tatgttgaaa cttgttacat aaaacataaa attacgactt gggaatttcg taggatggat       480
     ggaagtaaag cgttttcaaa cctccccccg ttctccttcg ctggagttga actcactgat       540
     cgaaggcaga aatggcatac ctggaagaga ggttttgaaa tttgcctccg aacggcaaag       600
     ataaaggatg ctactgagaa aaaagatatt ttgctgggtc aaggcggctt cgaacttcag       660
     gagattttct ttaacatccc tggggcagac gtcagtgagg acaaggagaa taatatcgat       720
     ccttacgatg tggctatcag caaactcgat gattattttg ctccacagcg tcatgaggtt       780
     cacgaaaggt acatcttttg ggctatgaag ccagagcaag gcgaaacact gtcgaagttc       840
     ataatgagaa ctcaaatcca tgcgagtaag tgcgatttcg gaaaaagtgc atctgaaagc       900
     gcagataaag ctgtcgtcga taaaacactg caattcgctc ctgctcattt gagggagaag       960
     ctacttcaag tggctgacct taccttagag gaggctataa aacaagtgaa tgcttacgaa      1020
     acaagccaag ccgctagtga tcaaataagt ggacaaagtg tgcctaatca gcaggtgaaa      1080
     actgaatatg ttcagcgagt tgcagctcga tgtcgttttt gtggcaaatc tcatggtccg      1140
     caacagcagt gtcctgcttg gaacagatct tgttcttttt gcggaaagcg tggccatttc      1200
     caagcggttt gttttgataa gccaagtacc agcagtggaa cgccacctgg aggcattgga      1260
     aaggtcgctc caaaacgtac gatgccagtt tatgtcaaag ggagttatga taaacactca      1320
     tctacgcaac cgaaaccgtt tgccaaacat ccacgtaaac cagtataccg tcagctgaat      1380
     gcgattgagg atagcagcat ggaggagatc gtaatcatgt gtcaaatctt catgcattta      1440
     aattgttggt atgacaaaca cagacaaatt cgtcctggaa aattgtatgg tgcaccgggc      1500
     aaactaaaaa gggtacggaa agataaaatg gcagtaacaa aattttaata tgatgaataa      1560
     ttcaagtacc aaagaattta ttgacaaaag gaacaaaccg tagagtaacc tacagtttat      1620
     tggacaacac ataactaata taaaagaaaa aagaaagcat aagtggccct tagcttcaat      1680
     aaaacgctta ttgagtaaaa taaatgcaat aaccaaaatg cattcctgta tcaacagtca      1740
     gcggaaaaaa acatgcagct tgttctgtgc cattatttaa aaataataca atattttcta      1800
     gctcaacatg caatttcggg aaatcccggg attttcaaaa atatcccggg attcgggatt      1860
     ttttagatcc cgggatttcc cgggattttt gtcccgggat tcccgggaca agaccctcag      1920
     atcagataga atatgtggaa atggtgtggt ctgaaaagga acgagatgag ctgctgtggg      1980
     ccgaagtcgg aggcgttctg attgagatgc aaatcgattc cggcgttcaa tcgaacatca      2040
     ttgatgacag tacgtggaaa atgatgacta cgaatggagt tcagacggtc ggaggtactc      2100
     aacgtgcgga tcggaaattc aaagcatatg cacagaaaga ctgtttggag gtaccccaca      2160
     tgtttgaggc ggaaatagtc gttcatgaca aacagaaggt gttgaaggct atggcacggt      2220
     tctatgtcgt gaaagacggg ccacaacctc ttttggggaa gcgaactgcc attgaactcg      2280
     gagttttgat agttggcctc ccgagccagc acgaatcaat acacagtgtg aaagttggtc      2340
     agccgtttcc aagtgttcga ggaataaaaa ttcacttgcc tgtcgataac tcggtaacgc      2400
     ccgttgcaca gcgattgcgt agacttcctt ttgcaacact tgaacgagtt gaggaaaagt      2460
     cggacgagtt gctatcgaaa gatgtcattg agaaggtttc gggacccagt aagtgggtat      2520
     caccaatggt tattgtggtg aaggatagcg gggatatacg gctgtgcatt gatatgcgac      2580
     gagttaacaa ggccgtcctc cgcgaaacac acccattgcc tactctcgaa gatattcgct      2640
     ggaagctgaa tggtgcaaca tacttttcga ggctagatat cagagaagcc ttccaccagc      2700
     tggagctgga tgaggaaagc aggccgataa ccactttcat aactcataag gggttgtatc      2760
     gatacaagcg cctggttttt ggaatatcct gtgctccaga gatgttccaa aaagtcatgg      2820
     aacaaatctt ggctgactgc gaatgtgcag tcaatttcat tgacgatata atcgtgttcg      2880
     ggaaaactga aaaagaacac gacgaatcgc ttgaaaaagt tctgagcaaa atgcgtgatt      2940
     atggaatatt actgaatcat gaaaagtgtg cttttaaact gaatgagatt gacttcttgg      3000
     gtcatcactt tgatgcaaac gggatgattc ctgctcattc taaagttgaa gccattaaaa      3060
     cctttcggac gcctgctaat gcagaagaag tacgcagtta tttgggactg gtgaactacg      3120
     ttggcgcttt tataccagat ctggcaacga tttcgtttcc tttgagagag ttgacgaaaa      3180
     acaaggctga attcaagtgg ggtaaagatg agcaaaaagc tttcgagcag ctgattagct      3240
     tgataagcaa tgtggaaaca ctatcccatt tcgacccaaa tttgaaaacg agagtagtag      3300
     ctgatgcgtc cccagttggt ttgggagctg ttcttctgca gttccctgat gaaaatccta      3360
     gggtcgttat gtacgctagc aaaagcctta cagaaacaga acgacgatat gcccagaccg      3420
     agaaagaagc cttagcgctt gtctgggcag tcgaaaggtt ccagatatac cttattggta      3480
     ttcggtttga ccttgagacc gaccacaagc ccttagaggc aatattttca ccagattcca      3540
     caccttgttt gcgcatagaa cgatgggtat tgagactgca ggcgttcagt tatgatgttg      3600
     tatatagaaa gggtaaatct aacatcgccg acccgttgtc tcgactttct cagccaacag      3660
     aaattgaacc gttcgaccct gactcagaag tatacatacg gaatgttgta gaactagcag      3720
     ctgtggacat agatgagttg gaaaacgcct ctgctaagga tattgaaatt tgtgagttgc      3780
     gggagtttct cgaccgtggc gtttggaact atacctctga gattatcaag ccataccatt      3840
     ttttgcggaa cgaacttggg aaagtaggtg acttggttgt ccgtggctca cgattaatag      3900
     tgccaaaatg tttgagggaa cgtatggttc atctggcaca cgaaggccac cccgggcgca      3960
     caaaaatgca gcagcggttg aggaatacgt gttggtggcc aggaatggac gaagctattt      4020
     tgcgagtagt agattcatgt gagggatgtc gggttgttag tcaaccaaat cggccagaac      4080
     ctatggtaag gcgccaattg ccggagtctc cgtggatcga tgtagccata gattttcttg      4140
     gaccacttcc gtccggagat tatctgttgg taatcatcga ttactttagc cgatataagg      4200
     aggtcgaggt wctgaggaaa ataacagcga gtgagactat tgatcgtttg gagaagatat      4260
     ttgtcagatt gggatatccg cgaacgataa ctttggacaa cggccgacaa ttcgttagct      4320
     tagaattcga gaagtactgc aaaaatcggg gaatcgtgct aaacaagacc acgccgtatt      4380
     ggcctcaaga aaatggcctt gtagagcgcc aaaaccggtc gttgatcaaa aggctaaaaa      4440
     taagccaggc gttgaaacaa gactggaagc aagatttact gacctatttg tccatgtatt      4500
     attcaactcc tcactccaca actggcaaga ctccaagtga gttgatgttc gggagaaaca      4560
     twagaacgaa actaccgtcg ttgcaagact tggccactgc agtgatgcca acggattaca      4620
     gagaccgaga tctggaagcg aaagaaaaag gaatggaagc agagaacgtt cgtagaaagg      4680
     caaaagtgtc ggagataaaa gtgggtgata aagttttaat gaaaaattta ctaccaggga      4740
     acaagttaac tccaacattt aatccagccg ttttgacggt aatagagaag caaggaccac      4800
     gcgtaacagt ccagaatacc gtcacaaaga agtcctacga tcgaaattcc agtcatctta      4860
     agcggttacc ttcacaagaa gaatttmctg agagcggagg gaaaactggt gcttcagttg      4920
     aasttgaggt tgctgagawc atgaaatcac cagtgagcgg aaacgacacg atggaacaag      4980
     cacaagagcc agatgttgca gaaacaaacc kagatgctct acgaggcaaa tctcggagag      5040
     tgatcagaag gcccatcaga tttgaagatt gcgtcactga ttttgggtca taaatgatta      5100
     ataaatgaag gggaga                                                      5116
//
ID   Gypsy-256_AA-LTR repbase;    DNA;    INV; 130 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-256_AA_;
KW   Gypsy-256_AA-I; Gypsy-256_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-130
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1114-1114 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 130 BP; 45 A; 14 C; 32 G; 39 T; 0 other;
     tgtggtgatg tgtgaatcta aatatcgaga tagtactgta tctgggatgc aagaaagtga        60
     gaggataata aaaacagtaa tggcgagcaa cacgtttgtg tttatatttt actggactgt       120
     aaatatcaca                                                              130
//
ID   Gypsy-257_AA-I repbase;    DNA;    INV; 5602 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-257_AA_;
KW   Gypsy-257_AA-LTR; Gypsy-257_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5602
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1115-1115 (2011).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1084..2856
FT                 /product="Gypsy-257_AA-I_1p"
FT                 /translation="MSINPTSEPFIPGTIPFSQYLEQLEWMFEHNNYTEDR
FT                 FKTSFLAVCGTEVFSQLKLLFPGQNLKDLTYKQITDKLKQRYDKKDSDVIH
FT                 SYKFWTRRQGQFEKAVDFVLDVKNLAELCEFGEFKDRAIRDVLVIGIYDRN
FT                 LQKRLFDEEDLSVAKVEKMIVNQEIASDRTQFLRKDDGVIARLGRRPNRAP
FT                 RRSNFNGRGRSRSDSRNRSFSFRSKSGGSYDRKSSYTNKEFLCSYCKKKGH
FT                 TRKYCYKLKNKSPRKFQSSVKFMDSPKPSVSGSSGLFKRLKEDMQSDSEDD
FT                 APCLMISSVNRINEPCYVDVKVENKRITMEIDSGSAESVISEDLFLRSFKH
FT                 LPVKTCNKRLVVIDGKKLKVLGKVEVSVKLGDIQEKLYLIILRCENSFVPL
FT                 VGRTWLDIFYVGWRNAFARPTATMEYISAINDDETVLDLKRKFPKVFDKEL
FT                 SNPIVGFEGDLVLKDNTPIFRKAYEVPLRLRQKVLEHLDGLERDGIITPIE
FT                 ASEWASPVVVVVKKNQDIRLVIDCKVSINKVIVPNTYPLPLAQDLFATLAG
FT                 SKVFCSLDLTGAYTQLLLSKRSRKITQRNKIDTFACLKDQIMCF"
FT   CDS           3134..5455
FT                 /product="Gypsy-257_AA-I_2p"
FT                 /translation="SPGKTLKTVKKKLYLVLERLSKANIKVNFKKCKFFVK
FT                 DLPYLGHILTDKGLLPCPDKVETIREAKAPQNVSELKAFLGLVTYYAKFIP
FT                 NLSTRIKCLYALLRKNTKYIWDCECEKVFNECKHFLLKPNLLEYFDPEKPV
FT                 VIVTDACSYGLGGVIAHQVKGEERPISFTSFTLNDAQRKYPILHLEALAVV
FT                 CTVKKFHKFLYGKKFTIYTDHKPLIGIFGKNGKNALSVTRLQRYVLELSIY
FT                 EYDIVYRPSSKMGNADFCSRFPTAHEIPKEIAREYIKSLNFTREFPLDYKE
FT                 VAKESSRDTYLLKIFEFLRKEWPSRIDRNYKDIYSHHQDLEEIEGCILFQD
FT                 RVVIPRVMKLKILKMLHMNHSGINKIKQLARRTVYWFGMNQDIEDYVKTYR
FT                 ICLETTTLSKKPPYSKWIPTNKPFSRIHADFFHFDKKVFLVVVDSFTKWIE
FT                 VEHMRNGTDHKKVIKVFLNIFARFGLPDVLVTDGGPPFNSEIFINFFQKQG
FT                 IVVLKSPPYHPESNGQAERTVRLVKNVFKKFLVDPQIRTLDTDEQISYFLI
FT                 NYRNICLETDGKFPSERMLSYKPKTLVDLINPKHNFKEKLANTHDDHQSGF
FT                 VKAGSTSDPFNNLKCGDLIYYKNNNPTDIRQWLPAKFLKRISTNISQVSLG
FT                 GRVLTAHKRQLKVVPASRRKTPRSFVFHGERDFGPTEPNKQQMQIEPPSVR
FT                 LNRKRRREDDDEEQSNASDASSDFYGFPADSFIFSGEEITTASHHQTQAED
FT                 LGNGSRRSKRKFKKKKKEGYIYY"
XX
SQ   Sequence 5602 BP; 1713 A; 877 C; 1254 G; 1757 T; 1 other;
     gtgggacgag gataaagata gttttttttt tcaaatttta accgcgaatt gaattattaa        60
     gttcggttta aagtaagttc gcgagtgaaa ggagataagt gaatttaaga aggaagattt       120
     gcgtgcaaac ggccttttgt aaattgtgag ttttaccaca gtttttaccc ttcttgtagt       180
     gcaatctttt ggcgtggcgt cagtttttta attttccttt gataaaagta actggtgttc       240
     ttcgggcagt agataggcta gacctttctt tttgcttgat tttaccggat ttgtggagcg       300
     ctgaaagaaa gaaatttgga aagtgtgtaa aaagaaattt acagagaagc gcatttattt       360
     tgagaaaatc gccattttgg aagcctacaa tttagtggat ttcttttgtg agaagataat       420
     aggcggatta ttaaatcatt ttttgtgtct tcttttgttc acacagcgag catcgacaca       480
     aagcagttga gtgaccgctg ggaataaagc gttttttcat catttgtgtg gtgtttggtt       540
     ttgggctctg agagagtgag ttcctagtga gataccacca gtgagtagtg agcgtgtggt       600
     gaagaattgc agttttgtca ggggtgactg accttctttg gctgcatagc gaagtttaaa       660
     aagcgcattg gaagttcatc gaccttattg gggttagctg ctgctgttgt tgctgaaagt       720
     tgctgttgat aggaagtgct gttgttgccg gattttgttg ccgctggaga agtttgctgt       780
     tttggtgaga ttggctgctg tttaccgccg cgattaaggc agatcgttca ttttgcatgc       840
     tgtgactgtg agtgccttgc cagtttttgg atacgattgg ctttttcccg cagctagggt       900
     agttgtgtgt attgtgcttc atctggaatc aggtatgtgg tattttcctt gatgcttatt       960
     ttatcaattt ttactgtttt gtcgtgtgac tatttgaaag tgtttcattt ttcttgtgtc      1020
     cgtataaaga tcagctattt attttgaatt ttgtgtattt tgattgtttt ttttattaca      1080
     aggatgtcaa tcaatccaac ctcagaacct tttatcccgg gaaccatacc attttcgcaa      1140
     tatttagaac aattagaatg gatgtttgag cacaataatt atacggaaga tcgatttaag      1200
     acttcgtttt tagctgtttg tgggactgaa gttttttccc agctaaagct tttatttccc      1260
     gggcagaatt taaaggatct tacgtacaag cagattacgg ataaactgaa gcagcgttac      1320
     gacaaaaaag actccgatgt gattcacagt tacaagtttt ggacgcgtag acaaggacag      1380
     tttgagaagg cagttgattt tgtgcttgat gttaaaaatt tagctgagct ttgtgagttt      1440
     ggtgagttca aagacagggc tattcgtgac gttttagtaa ttggaattta tgatcgaaat      1500
     ttgcaaaaac gtttgttcga cgaggaagat ctttctgttg ctaaggtaga gaaaatgata      1560
     gtaaatcaag aaatagcttc ggacagaact caatttttga gaaaagatga tggtgttata      1620
     gctcgtttgg gtagaaggcc aaatcgtgct ccgcgtagat cgaatttcaa tggaagaggt      1680
     agaagtagga gtgacagtag aaatcgatca ttttcattca ggagcaaaag tggaggaagc      1740
     tatgacagaa agagcagtta tacaaacaaa gagtttttat gttcatattg caaaaagaaa      1800
     ggacacacca ggaaatactg ttacaaactt aaaaacaaaa gtcctcgcaa atttcagtcc      1860
     agtgtaaaat tcatggattc gcctaaacct tctgtatcag gttcttcagg attgttcaag      1920
     cgactgaagg aagatatgca gtcagattca gaggatgatg caccttgttt gatgatttct      1980
     tctgtaaaca gaattaatga accatgttat gtagatgtca aagttgaaaa caagagaatt      2040
     acaatggaga tagacagtgg ctcagcagaa agcgtcatat ctgaggatct gtttctgcgt      2100
     agctttaaac atcttcctgt gaaaacgtgt aacaagcgtt tggtagttat tgatgggaag      2160
     aaactgaagg ttttaggaaa ggttgaagta tccgtgaagt taggagacat tcaggaaaag      2220
     ctttatctga taatcttacg ttgcgaaaac agttttgttc ctttggtggg gcgtacatgg      2280
     ctggacattt tttacgttgg atggaggaat gcttttgcga gaccgactgc gaccatggag      2340
     tacatcagcg caattaatga cgacgagaca gttcttgatt tgaagcgtaa gtttccgaaa      2400
     gtatttgaca aggaattatc taatccgata gtaggtttcg agggtgattt ggtattgaaa      2460
     gacaatacac ctatttttcg taaggcatat gaagttcccc tccgtttgcg acaaaaagtt      2520
     ttggaacacc tagatggttt agaaagggat ggtataatta caccgatcga ggccagtgaa      2580
     tgggcttcac cggttgtagt tgttgttaag aaaaaccaag acatacgatt agtaatcgac      2640
     tgtaaagtct caataaacaa ggtgattgtt ccgaacacat accctttgcc attagctcag      2700
     gatctttttg ccactctcgc aggttccaag gttttttgtt cattggattt aacgggggct      2760
     tatacacaat tgttgctatc aaaacgatca aggaaaatta cacagcgtaa caaaattgac      2820
     actttcgcgt gtctcaagga tcaaattatg tgtttctagt agattttggg tcgctgaatc      2880
     tgatgccgtt gtcagaaatg tagcagcacg tcacaatgtt tagctacagg tcgccaaagt      2940
     tgtataaaac actggtttta ttgatgttta catgaaattt aaagtgttat gatcattaat      3000
     acaattaaag gactttatgc atacaaccgt ttgccacagg gggcatcctc aagcgcatcg      3060
     atatttcaga aggttatgga tcaagtgctt caagggctag aaggtgtatc gtgttatctc      3120
     gatgacgttt tgatctccgg gaaagacttt gaagactgta aaaaaaaaac tttatttagt      3180
     cttggagcga ttgtccaagg ctaatataaa agttaatttt aagaaatgca aattttttgt      3240
     aaaggattta ccgtatttgg gacacattct gacggacaag ggattacttc cttgcccgga      3300
     taaagtggaa actatccgcg aagcgaaagc tccgcagaat gtttctgaac ttaaagcttt      3360
     tttaggtttg gttacttact atgccaaatt cattccaaat ttgtctaccc gaataaaatg      3420
     tctttacgct ttgctacgaa aaaacaccaa atacatttgg gattgtgaat gtgagaaggt      3480
     ttttaatgag tgcaaacatt ttttattgaa accaaatctg ttggagtatt ttgatccaga      3540
     gaaaccagtt gttattgtga cggatgcatg ctcctacggc cttggtggag tgatagcgca      3600
     tcaagtgaaa ggtgaggaac ggccaattag cttcacttca ttcacgttaa acgatgctca      3660
     gcgaaaatat ccgattttac accttgaggc attggcggtt gtatgcactg twaaaaaatt      3720
     ccataaattt ttatatggga aaaaatttac catttacact gatcataagc cgctcatcgg      3780
     aatttttggc aagaatggga aaaatgcact ttctgttaca cgactacagc gatacgtgtt      3840
     ggagctttct atatatgagt atgatattgt atatcgtcct tcctcgaaga tggggaacgc      3900
     ggacttttgt tcgagatttc caacggctca tgaaatacca aaagaaatag cgcgtgaata      3960
     tataaaaagt ttgaatttta cgcgtgaatt tcctttggat tataaggagg ttgcgaaaga      4020
     atctagcaga gatacatatt tattgaaaat ctttgaattt ttgcgaaaag aatggccgag      4080
     ccgaattgac agaaattaca aagatattta ttctcaccat caggatttag aggaaattga      4140
     agggtgcatt ttatttcagg accgagtagt aatacccagg gttatgaagt taaagatctt      4200
     aaaaatgttg catatgaatc actccggtat taacaaaatt aagcaactgg cccgtagaac      4260
     ggtttattgg ttcggtatga atcaggacat tgaggattac gttaaaacat acagaatttg      4320
     tttagaaact acaactcttt caaaaaaacc tccttactcc aaatggattc ccaccaacaa      4380
     accatttagt agaatccacg cagatttttt tcattttgat aaaaaggtgt tcctagttgt      4440
     agtggatagt ttcactaagt ggattgaggt ggaacatatg agaaatggaa cggatcataa      4500
     aaaagtgata aaggttttct tgaacatttt tgcccgtttt gggcttccgg atgttcttgt      4560
     gacagatggc ggtccaccct ttaactccga aattttcatt aattttttcc aaaaacaagg      4620
     aattgttgta ctgaaaagtc ctccgtatca cccggaaagt aatggtcagg ctgaaagaac      4680
     agttcgtttg gtgaaaaacg ttttcaaaaa gtttttagtc gatccacaaa taaggacatt      4740
     ggataccgat gagcaaattt catatttctt gataaattat agaaatatat gcttggaaac      4800
     tgatggaaaa tttccatctg agcgaatgtt atcgtacaag ccaaagactt tagttgattt      4860
     aattaatcca aagcataatt ttaaagaaaa actagctaat acgcacgatg accatcaaag      4920
     tggttttgtt aaggcaggta gcacatctga tccttttaac aacctgaaat gtggagatct      4980
     gatatattat aaaaataaca atccgactga tatacgacaa tggttgccag ccaaatttct      5040
     aaaacggatc tctacaaata tttcacaggt ttctttggga ggcagagttc tcacagcgca      5100
     caaacgtcag cttaaggtgg taccagcttc tcgccggaaa actcctagaa gttttgtttt      5160
     ccatggagag agggattttg ggccaaccga gccaaataaa cagcaaatgc aaattgaacc      5220
     accatcagta agacttaata ggaaacggag aagagaggac gatgatgaag agcaatcgaa      5280
     tgcttcggat gctagcagcg atttttatgg gtttcctgct gactcattca tcttttcggg      5340
     agaggagatc acgacagcaa gccatcatca gactcaagcg gaagacttgg gaaacggatc      5400
     acggcgttca aaaagaaaat ttaagaagaa gaagaaagaa ggatacatat actattgaaa      5460
     tagtgatcga atatttgaat ttgtcttaat atgtttttgc atgaaaattg aattttcgtt      5520
     ctgagatcgt aattttataa tatatcttga aacgttcgaa ggtttagaaa tatttatagt      5580
     ttttgcttaa gggttgagga gc                                               5602
//
ID   Gypsy-257_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-257_AA_;
KW   Gypsy-257_AA-I; Gypsy-257_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-235
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1116-1116 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 235 BP; 69 A; 44 C; 54 G; 68 T; 0 other;
     tgttacgatc tagttggcaa tgccatttcg agctttaggt agtgcggtaa aatggacagc        60
     taccataaca ttgatgagag tagagagaat acgatcggaa tcggttcggg tccgaactcg       120
     aacacagcat tgtaactgaa caggagaaat acatgagttt agttttactt tgactatcga       180
     caagctgagt tgcgtttatc tccccatatc accggctaag tattagctta tttca            235
//
ID   Gypsy-258_AA-I repbase;    DNA;    INV; 4965 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   07-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-258_AA_;
KW   Gypsy-258_AA-LTR; Gypsy-258_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4965
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1117-1117 (2011).
XX
RN   [2]
RP   1-4965
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 97% similar to each other.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           793..2397
FT                 /product="Gypsy-258_AA-I_1p"
FT                 /translation="MPPFKAGDDPRNNWIKWRKALERFLRVNKVEADEDKY
FT                 DLLLVLGAIELQSFYDKITKWELRRPVSDNGEEYIVLKYESAIASLDAYFA
FT                 PQLNKRFERHLFRAMKQESHEPFEEFVFRLKDQANRCQFVDVDDAIVDQII
FT                 EGCISPELRKKLLTEDLSLHETTVVGKTLEEVQKQAKEFSKPSTSGLSSLD
FT                 GAVVQKINEQSSGSGKQVGRQVGNTRKCYNCNKVGHLAKDSGKCPARNVTC
FT                 HSCGTVGHFAVCCRKRKYDSSATSSTMSNKKTRVHAIVSPQDKRDGVFFVR
FT                 TGDELDEVLLLDLGGVRAKMLVDSGSPANIINNETYVLLKAERAMMMNDRT
FT                 PRQEELRLKSFASDKEIRFSRVFEIEIKIPEEESGIWSHVLVAPEGQVNLL
FT                 SKGTAFALGVLKIGYKVNQVSKICEDEFPKIPNAMLKIQVDKTVHPVVQPV
FT                 RRFPVAMEADVEDAINDLVQKKIVERAEGPLSWVSPLVPIRKTDGRIRLCV
FT                 DMRAANRAVMRENYPMPNIDSAMATITKVSFQLLLLKKR"
FT   CDS           2426..4855
FT                 /product="Gypsy-258_AA-I_2p"
FT                 /translation="VVKMSKIDLEAAYYHFELHPDSRDITTFVARSGVYRF
FT                 CRLMFGIKSAPELFQREMESLFRGIKGLVVYMDDILIHGETEEAHDRTLEE
FT                 VMKRIKEMNLKINSQKSMFGVTELSFLGYHLSQDGIRPTEEKIEAIRNLQP
FT                 PTSVSDLRSLLGLINFLGRFVPNLADLTFHMRQLLVKSNTFEWKVSHDQEL
FT                 NKLKELLGKVESLAFFDPLDETFLVTDASPVGLGAILIQMKNGSPRPVSCV
FT                 SKSLTAYEKKYCQTEKECYAIIWAMEKLFMYLYGLHFTLITDCKPLEYLFN
FT                 KAQSKPSARIERWILRLQSFDFTVKYEPGESNLADSLSRLSQINNSTEEGA
FT                 DVLSWLSEEIKPSAMSIEEIERATLQDDELQNVKEALGTDDWDGVLAEFRT
FT                 ATVRDELSLYGDLVLRGDRIVVPKPLRAKVIEIAHLGHQGATAMKAQLRAK
FT                 VWFPQMDKAVESAVRKCKPCLMTSIPDKPNPLARRIPTEPWQDLAIDFKEG
FT                 LPDGISLLVVVCYTCRFVQVEPMKPATTQRVIGALLRMISCFGIPRSITAD
FT                 NGPQFRATEFSKFCNSYGIHLNLSTPYWPEQNGAVERQMRNIGKRLKISAI
FT                 QDTDWKTDLYEYITLYHSTPQETTGLSPGQMMFGREIRNRIPSIHQPPKLR
FT                 LEAAKDKDMMIKEYHQRHANQDRHAKEHKLKRGDVVLMRDLNPGAMQPNFR
FT                 QDEFEVTQVDKGAITVKSMDTGKVYLRNSSHLKKLKDSETVLNDTTEQYCF
FT                 EGPVETESRDGDTYAGASGESTEQVDAATNVVTDKRELRAKRASKLPNKFQ
FT                 DYVMVVNE"
XX
SQ   Sequence 4965 BP; 1546 A; 898 C; 1268 G; 1252 T; 1 other;
     tacaatggct tcgaggatga taattggtaa gaattgcgtg caaaaaaaaa aaaattgagg        60
     aaaaaaaaca ttgaacgctt tgtacagcga ctaaactata cattgtgaaa tatggattaa       120
     atgaaaaatg gacatcaaag aattaaattg gttggaaatg gacatcgaaa gaatcggctt       180
     ggacactgaa aaagatggcg gaggtgttgg aaaagaacag taaagtggac gcaagtcttt       240
     ttttattttt ccatgcggct gggtatgcgc gtgatagatg agaggaaaag ctgatttttc       300
     attcagaaaa aaaacgaaaa aatgacgatg gttcgtattg gaagagaaga aagttttttt       360
     tttgctgaaa aattgcttcg tgtttgagaa aagcttcgtg ctagaaaata gcttcgtgct       420
     tggaaagaat aaaaagcttc atgattgtag gagagaaagc ttcgtgctaa gaatggcttc       480
     gagctggaaa gcttcgtgct aagaatggct tcgtgctgag aatggcttcg tgctgagaat       540
     ggcttcgtgc tgagaatggc ttcgtgctga gaatggcttc gtgctaagaa tggcttcgtg       600
     ctaagaatgg cttcgtgcct agaatggctt tgtgtttaaa aacggcttmg tgctagaaat       660
     gacttaacga gcaataacga cttcgtgtct tataccaaaa atttgctgtc ataacaaaat       720
     tgagatgttt gctcgtagaa ttactaaaat gaagtttttc tttctctcta tgttgttata       780
     gatgcggcag caatgccacc gtttaaagca ggagatgatc cgaggaataa ttggataaaa       840
     tggagaaagg ctctggaacg tttcctacga gtcaataaag tcgaggctga cgaagataaa       900
     tatgatttat tgctcgtttt gggggcgatt gagttgcaat cattctatga caagattaca       960
     aaatgggagc tccgtcgtcc ggtatctgat aacggcgaag aatacattgt gttgaagtat      1020
     gaatcggcaa ttgcatcact ggatgcttat tttgcaccac aactaaacaa gcgattcgag      1080
     cgtcaccttt tccgtgctat gaagcaggaa agtcacgaac cttttgagga attcgtattc      1140
     cgattgaagg atcaggcaaa tcgctgccag tttgttgacg tggatgatgc catcgtggac      1200
     cagattatag aaggctgtat ttctccggag ctaaggaaaa agttgctgac cgaggatctc      1260
     agtttgcatg aaacaaccgt cgtgggaaaa actttggagg aagtgcagaa acaagcaaaa      1320
     gagttctcga aaccgtcgac atctggattg tcgagcttag atggagcagt tgtacagaaa      1380
     atcaacgagc agtcttccgg ttctggcaag caagtaggaa gacaagtagg aaatactcga      1440
     aaatgctaca attgcaataa ggtcgggcac ctggcaaaag attcgggaaa atgtccagca      1500
     aggaatgtaa cttgtcattc atgtggaacc gtcggacact tcgccgtttg ttgcaggaaa      1560
     cgaaaatacg attcatcagc aacgtcttcc acgatgtcga ataaaaagac aagagtccat      1620
     gcaatcgtat caccgcagga caaacgagat ggtgtatttt ttgtgcggac aggagacgaa      1680
     ttagacgagg tactgttgct tgatctggga ggggtcagag caaaaatgct ggtggactcg      1740
     ggatctccgg cgaacatcat caacaatgag acatacgtgc tactgaaagc agaacgagcg      1800
     atgatgatga acgatagaac acctcgacaa gaagagctaa ggctgaaatc ttttgcgtcg      1860
     gataaagaga tacgattcag cagagtattc gagatcgaga taaagattcc ggaggaagaa      1920
     agcggaattt ggtcccatgt tctagttgcc ccggaaggcc aagttaatct cttgagcaaa      1980
     ggaacggcgt ttgcgttagg agtccttaaa atcggatata aggtgaatca ggtatcgaag      2040
     atctgtgaag acgaattccc aaagattccg aatgcgatgt tgaaaattca ggtggacaaa      2100
     acagttcatc ccgttgtgca accagtgcgt aggttcccag tcgccatgga agcagatgtg      2160
     gaggacgcga taaacgattt agtccaaaag aagatcgtag aaagagctga agggccttta      2220
     agttgggtgt cgccattggt ccccatcagg aagaccgatg gaagaattag gctctgcgtg      2280
     gatatgcggg cggccaatcg agcggttatg cgcgagaatt accctatgcc aaacatcgat      2340
     agcgcgatgg caacgatcac taaggtaagt tttcaattgt tgctgttgaa aaaaagatga      2400
     gcctatttct gtttaaattg gttaggtcgt gaagatgtcg aaaatagacc tggaagccgc      2460
     gtactaccac tttgaattac atccagatag cagggacatt acaacgtttg tagctaggag      2520
     tggtgtgtac cgtttctgtc gtctcatgtt tgggatcaaa tctgccccgg agttgttcca      2580
     acgtgagatg gaaagtttat tccgtggcat caagggacta gttgtgtata tggatgatat      2640
     actcattcac ggcgagacgg aagaggctca tgatcgtaca ttagaagagg ttatgaagcg      2700
     aatcaaggag atgaacttaa aaatcaactc gcaaaagtca atgtttggag tgaccgaatt      2760
     gtctttttta ggataccatc tttctcagga tggtattcgc cctacagaag agaaaattga      2820
     agccatacgc aatttgcagc caccaacatc agtttctgat ttgagatcgc tgctaggatt      2880
     gattaatttt cttggtagat tcgttccaaa tttggcagat ctaactttcc acatgcgtca      2940
     gctgcttgtc aaaagtaata cgtttgaatg gaaagtatcg catgatcagg agctcaataa      3000
     gcttaaggaa ctgctgggga aggtggaatc gttggctttc tttgacccgc tagatgaaac      3060
     gtttctggtt accgatgcta gtcctgttgg actaggcgcc atactgatcc agatgaaaaa      3120
     tggttctccg agaccagtat cgtgtgtatc gaagagtttg acagcttatg aaaaaaagta      3180
     ctgtcaaact gaaaaagaat gttacgcgat catttgggct atggagaaat tgttcatgta      3240
     cctttacgga ctgcacttta cgctcatcac tgactgtaag ccgctggagt acctcttcaa      3300
     taaagcgcaa tctaaaccat cagctagaat tgagcgctgg attctgcgac tgcaaagctt      3360
     cgattttacg gtcaaatacg agcctgggga aagtaacctt gcggattctt tgtcgaggct      3420
     ttcacagatc aacaacagta cagaggaagg tgctgatgtc ctatcttggt tatccgagga      3480
     aatcaaacca tcagcgatgt ccatcgagga aattgaaaga gcgaccctac aagatgacga      3540
     gctacagaat gttaaggaag ctctaggtac agatgattgg gatggagtac tagccgagtt      3600
     cagaactgcg accgttcgtg atgagttaag tttgtacggt gacctagtac ttcgaggtga      3660
     taggatcgtt gtgcctaaac cattgagagc caaagtgatc gaaattgcac acctgggaca      3720
     tcaaggagcc acggcaatga aagctcagct acgggccaaa gtttggtttc cacagatgga      3780
     caaagcagta gagtcagctg ttcggaagtg taagccatgc ttaatgacgt ccattcctga      3840
     taagccaaat cctttggctc gtcggattcc aacagaacct tggcaagatc tcgccatcga      3900
     tttcaaagaa gggctgccgg atggtatatc gttgttagta gtggtatgtt acacttgtcg      3960
     attcgtccaa gtagaaccaa tgaagccggc gacaacacaa cgagtgatcg gagcattgtt      4020
     aagaatgatt agttgttttg ggattccgcg gtcgatcaca gcggataatg gaccgcaatt      4080
     cagggcgaca gagttttcga aattttgcaa cagctatggg attcatttga atctttcaac      4140
     accgtactgg ccagagcaaa acggcgcagt ggaacgccag atgaggaaca ttggcaaacg      4200
     tttgaagatc agtgctatac aggataccga ctggaagacc gatttatacg aatacatcac      4260
     tctgtaccat tcaacgccac aggagaccac cggtttatca cctggacaga tgatgtttgg      4320
     tagagaaatt cgtaatcgca ttccttcaat tcaccaacct ccaaaactga gattagaagc      4380
     cgcgaaagac aaggatatga tgatcaaaga gtatcatcaa agacacgcta accaagatcg      4440
     tcatgcgaaa gagcataaat tgaagagggg agacgtagta ttgatgcgcg atctaaatcc      4500
     gggagctatg cagcctaact ttaggcaaga cgagtttgag gtaacacagg tggataaagg      4560
     agcaatcaca gtgaaatcaa tggatactgg aaaagtttac ctacggaaca gttcacacct      4620
     taagaagctg aaagactcag aaacggtgtt gaatgatacg acagaacaat attgctttga      4680
     aggaccagtt gagactgaat cacgggatgg agacacatat gcaggcgcct caggtgagtc      4740
     tactgaacag gtagatgcag ccacaaatgt tgtgactgac aagagagagc tacgagccaa      4800
     acgcgcaagc aaactgccga ataagtttca ggattatgta atggttgtta acgagtaggt      4860
     aatctaaggt ttgatgtgga tgattggaat ccagcaataa aagataattg atggaataag      4920
     agaggtatta ttgggatttg ttttactgtc taaaaatagg aggga                      4965
//
ID   Gypsy-258_AA-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   07-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-258_AA_;
KW   Gypsy-258_AA-LTR; Gypsy-258_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-189
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1118-1118 (2011).
XX
RN   [2]
RP   1-189
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 189 BP; 63 A; 28 C; 51 G; 47 T; 0 other;
     tgtaacgata tacaagagtt gaaataatac tttagtttca gtgtaggaaa tgttctacaa        60
     ttgggaacac tggattgtgg tacgatgaaa tgcacgaacg aaggttgagg caattgagta       120
     cgacagctag aggagatcag acgtaacgcg cgtaagctcc tgtgtggtcg gagtatcgaa       180
     caaattaca                                                               189
//
ID   Gypsy-259_AA-I repbase;    DNA;    INV; 3959 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   07-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-259_AA_;
KW   Gypsy-259_AA-LTR; Gypsy-259_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3959
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1119-1119 (2011).
XX
RN   [2]
RP   1-3959
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 98% similar to each other.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..885
FT                 /product="Gypsy-259_AA-I_1p"
FT                 /translation="MLDEVEDQAAATVTASVAIKLPDFWKSDPAMWFAQAE
FT                 AQFVLAGVTRDATKFYHIIAKVDQSVLCHISDLVANPPQDDKYQAIKSRLL
FT                 SRFEMSAQAKMEKLLNSCDLGDMKPTHLLARMQDLAAGLKVDDGLMKMLFL
FT                 QRLPANVKTVLTIHDGTLMKLAEMADKMVESSYPQVAAAAFQPAVSSQEEL
FT                 VEQIASLTAEIRKLRARNDRNERSRSSSRARQRSSDRGSVCWYHKKYGAQA
FT                 HQCREPCAFRSSPKN"
FT   CDS           1209..3944
FT                 /product="Gypsy-259_AA-I_2p"
FT                 /translation="MVDLKHQRIVDGTTNLKATVGVVHSLLHDVTTINYDH
FT                 PFRRLLEEFQEITRPSTLRAEVHHDITHHIITKGPPVAYRARRMSPDKLQI
FT                 AKQEFQTMMDLGICRRSSSSWASPLHCVPKKSGQLRFVGDYRKLNSVTVPD
FT                 RYPVPHIHDLLNTLHGKSIFSTIDLERAYHQIPVETEDVPKTAVITPFGLF
FT                 EFTRMQFGLCNAGQTFQRFMHRIFADLDFVVVFIDDICIASSSIEEHYRHM
FT                 RTVFDRLRSNGLVINLPKCKFAKQEVEFLGYLINKDGVKPLPSRVTAVLEY
FT                 ARPTTVKDLRRFLALVNGYKRFVRQATDMQAALRNLITGNKKNDSRKIEWS
FT                 VQANEAFENCKKGLAEATLLYYPDPTKPLGLFVDASNTAAGAVLQQLHNGT
FT                 WQPLGFYSEKFTSGQRNYSTFGRELIGMKMSVRYFRHLLEGRSFTIFTDHN
FT                 PLTHAMTSNSACRLPHEERALQFISQFTTDIQHISGKQNGIADSLSRLNAI
FT                 SSPSPIDYKIIALDQDSDPELQNLLRSTNSSLNLKTLTLQQCSKPLYCDVS
FT                 VTGSTRPFIPESHRQVIMEHFHNIAHPGIRATRKFVSSRFVWPKMNRHIAE
FT                 FVRKCEACQKSKIHRHTTAPLASFGLPKCRFNHIHVDLVGPLPPSNGHTYL
FT                 LTIVDRYTRWPEAIPLEDMTANTVATALCSQWISRFGCPEYITTDQGRQFE
FT                 SELFRELAILLGVNHTRTTAYHPQANGMVERFHRKLKEAIMCVDAKKWFTR
FT                 LPLILLGLRTAIKEDMDCSPAELVYGQPLRVPGEFFEPPEKIVDRADFSLD
FT                 LHRVMDQIRPVEAKHHTKGKLFVNQKLKDCTHVFVRHDAVKKSLQRPYDGP
FT                 YRVLSRTDKYVDILVNQKQQRVSIDRVKPAYTGSETTTNDPVNKKTIVTPS
FT                 GHRVKFLV"
XX
SQ   Sequence 3959 BP; 1119 A; 958 C; 888 G; 994 T; 0 other;
     ttggtgaccc cgacgtgagg aaatccgcgg caaaacgcga cgattttatc gagtttcgta        60
     cgttcgaatc tttcgcgtcc atatcgtcgc cattttgttt ttaaccaagc cgacaaaatg       120
     ctggatgaag tggaggatca ggctgcagca acagtcacgg catcagtagc cattaaattg       180
     cccgattttt ggaagagtga tccggctatg tggttcgccc aagccgaagc tcagttcgtg       240
     ctggctggcg taacgcgaga tgcaacaaaa ttttaccaca taatcgcaaa agtagaccag       300
     agcgtacttt gccatatctc ggatttggtg gcaaaccctc cacaggacga caaataccaa       360
     gccatcaaga gcagactgtt gagtcgcttc gaaatgtcag cgcaagctaa gatggagaag       420
     cttttgaact cctgcgactt gggtgatatg aagccgacgc atctcttggc ccgaatgcag       480
     gatttggcag ctggactcaa agttgacgac ggtctaatga agatgctgtt tttgcaacga       540
     ctcccggcaa atgtgaaaac tgtactgacc atccacgacg gtacactgat gaaattagcg       600
     gagatggcgg ataagatggt ggaatcctcc tacccacaag tggcagccgc cgcttttcag       660
     ccagctgttt cgagtcagga ggaactcgtg gagcagattg ccagtctcac agcggaaatt       720
     cggaaattaa gagcaagaaa cgacagaaac gagaggagcc gatcttcgtc tcgagcccgg       780
     cagcgttcta gtgaccgtgg tagcgtctgt tggtaccaca aaaagtacgg tgcacaagct       840
     catcagtgtc gcgagccgtg tgcgttcaga agttcgccaa aaaactaaac acttgcccat       900
     ctggaacggc ggaggtgggc tcaaacaaag aaagccgtcg cttatgtgtc atcgacaaaa       960
     tcaacaacgt tcgcttcctg gtcgacaccg gatcggatgt ctcgatcctt ccagctacta      1020
     gacgagatcg aagtaagcca ccgattccgt ttattttgca tgctgccaac agcacaaaca      1080
     tcaaaacttt cgatacccgt ttcctgtatg tggacctcgg acttcgccgg aggtattcct      1140
     ggaatttttt ggtagccgat gttaacacgg ccatcatcgg agcagatttc ctatcctatt      1200
     ttggattgat ggtggatctc aagcatcagc gtatcgtcga cgggacaact aatctcaaag      1260
     ccaccgttgg tgtagttcat tcgcttctac atgatgtcac tacgatcaac tacgaccatc      1320
     cgttccggcg tctacttgag gaattccaag aaatcactcg cccttcaacg ctgagggcgg      1380
     aagttcatca tgatattact caccatatca tcacgaaagg accacccgtt gcttataggg      1440
     ctagaaggat gtcgcccgac aagttgcaaa tcgcgaagca agagttccag acaatgatgg      1500
     atcttggcat ctgtcgccgt tctagttcca gttgggcgag ccctcttcat tgtgttccca      1560
     aaaagtctgg acagttacgc tttgtgggag actaccgaaa gttgaacagt gtgactgtgc      1620
     cggacagata cccggtacca cacatacatg acctcctcaa cactcttcat ggtaagtcaa      1680
     tattcagcac tattgatctt gaacgagctt accatcagat accggtagaa acggaagacg      1740
     taccaaaaac ggccgtcatc actccattcg gtcttttcga atttactagg atgcagtttg      1800
     gcctgtgtaa tgcaggtcaa accttccaaa gattcatgca taggattttt gcagacctcg      1860
     atttcgtcgt cgtcttcatc gacgatattt gcatagcttc gtcatcaatc gaagaacact      1920
     atcgacacat gcgaactgtt tttgaccgac ttcgatcaaa cggtctcgtc attaatcttc      1980
     cgaaatgtaa atttgcgaaa caagaagtcg aatttctcgg atatctgatt aataaggatg      2040
     gcgtaaaacc gttgccaagt cgtgtaacag cagttctaga atatgctcga ccaacgacag      2100
     ttaaggatct tcggagattc ttggcactag tgaacgggta taagcgattt gtacgtcaag      2160
     caaccgatat gcaagcagca ttgcgtaatc tcataacagg gaacaagaaa aacgactctc      2220
     gaaaaatcga gtggagcgta caggcaaatg aagcgtttga gaattgtaaa aaaggattag      2280
     cggaagcaac attgctctat tatcccgatc caaccaaacc tttagggcta tttgtggatg      2340
     cttccaatac tgcagccgga gctgttttgc agcagcttca caacggaacc tggcaaccgt      2400
     taggcttcta ttcggaaaaa tttacatcgg gccaacgcaa ttactctacg tttgggcgcg      2460
     agctgatagg aatgaaaatg tccgtcaggt atttcagaca tctgttagag ggtcgatcct      2520
     ttaccatttt taccgaccac aacccactaa cacatgcgat gacatccaat tctgcgtgtc      2580
     gtctacctca tgaagaaaga gctttgcagt ttatatcaca attcactaca gacatccagc      2640
     acattagtgg caaacaaaat gggatcgcag attcgctctc cagattgaac gcgatcagtt      2700
     ctccatcgcc aatagactac aaaattattg ctctggatca ggacagcgac cctgaacttc      2760
     aaaatttgct taggtccaca aactcatcac tgaacttaaa aacactcact ctgcaacaat      2820
     gttccaaacc tctttattgt gacgtctccg tcacaggttc cactcggcca ttcataccgg      2880
     aatctcatcg acaagtgatt atggaacatt ttcataatat tgctcatcct ggcattcgag      2940
     ccacccgaaa gtttgtgtcc agtaggtttg tttggcccaa aatgaacaga catatcgctg      3000
     agtttgtgag aaaatgcgaa gcatgccaaa aatcgaagat tcaccgtcac actacagcgc      3060
     cattggcctc atttggtttg ccaaaatgcc gattcaacca tatccatgtt gaccttgtag      3120
     gtccattgcc tccgtctaac ggtcatacgt accttcttac aattgtagat cgatacacca      3180
     gatggcccga agctattcct ttggaagata tgacggcaaa tactgtagca acggcacttt      3240
     gctctcaatg gatctctcgt tttggctgcc ctgaatacat cactacggat cagggacgtc      3300
     aatttgaatc cgagttgttc agggaattgg caattctact tggagtcaat cacacacgta      3360
     caaccgcata ccacccacaa gcgaatggga tggtcgaacg ttttcatcga aaattgaagg      3420
     aagccatcat gtgcgtcgat gccaagaagt ggttcactcg actcccttta attctactcg      3480
     gcctacgaac tgctattaaa gaagatatgg attgttctcc tgccgagttg gtgtacggtc      3540
     aacctttacg tgtacctgga gaatttttcg agccgccgga aaaaatcgtt gatcgagccg      3600
     atttttcgtt ggacctccat cgtgtaatgg accagattag accagtcgaa gccaaacatc      3660
     acacaaaagg caaattattc gtgaaccaaa agctgaagga ttgcactcac gtatttgtac      3720
     gacacgacgc tgttaaaaaa tctctacaac gaccttatga cggcccttat cgtgtactta      3780
     gtcgaacaga taagtacgtg gatatcctgg taaatcagaa acagcaaaga gtttcgatcg      3840
     accgggtaaa accagcttac accgggtcag aaacaactac caacgatcct gtgaataaga      3900
     aaactatagt tacaccttca ggccaccgcg ttaagttttt ggtgtaactg ggggggcac       3959
//
ID   Gypsy-259_AA-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   07-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-259_AA_;
KW   Gypsy-259_AA-LTR; Gypsy-259_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-212
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1120-1120 (2011).
XX
RN   [2]
RP   1-212
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 212 BP; 68 A; 42 C; 50 G; 52 T; 0 other;
     tgtggtggtt ggcacacccc tggatgccac tcacaccaag cagagagaga gaaaggatga        60
     cgacaagaag agagaaacaa atcgagttag tgagtagcaa agctaaactg tgtaagcacg       120
     cgttgaaatt attaccgtaa taaaatattg ttttcgatag ttttcgcgta cgtttattgt       180
     ctcaattaat tcggctgcac acgtccgcca ca                                     212
//
ID   Gypsy-25_AA-I repbase;    DNA;    INV; 4573 BP.
XX
AC   supercont1.308;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_AA_;
KW   Gypsy-25_AA-LTR; Gypsy-25_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4573
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.308; Positions   25674   30246.
XX
CC   'GATTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..4534
FT                 /product="Gypsy-25_AA-I_1p"
FT                 /translation="MEELRALLARQNELFAALADRVNNIQVNVPAMISPQP
FT                 VPQPPLLCLEGDMSENFDFFERNWNNYASAMSMDQWPEDQNPKKVGFLLSV
FT                 IGFEALRKYFNFELTDEQRQSPIAALAAIKAKVVRVRNMNLDLFEFLSAKQ
FT                 ESESIDEFVTKLRVLAKPCQLGALEERFLTYKVVTANKWPHLRKRLITSSD
FT                 VTLAKVVDECRLEEVSVRRFMALGAERESEVNYIQPRREKVEKKSCKFCGG
FT                 RHIFEKGLCPALGQKCRKCKAKNHFEKMCPTNKGAVKKRRVKEVSIHSDDS
FT                 DESESNVNSESEESSEERQIGKIYNNSSKGGHVLADLQLKVNGRWENVVCE
FT                 LDTGANTSLIGYNWLKKLTGKRNPELFPSEFKLQSFGGNPIPVLGEVKLPC
FT                 RHNEQKVSLILQVVDVDHRPLLSANVCDVLGLVKFCNTVSYVRPEKPISQS
FT                 DVWKVHRIEANQIANDFSDVFNGYGRIEGEVLLEVDPAVPPLIQQPRRIPI
FT                 ALRDKLKVELDNLEKSGIIVKEQQHTTWVNNILLVNKTASGESFRICLDPV
FT                 PLNKALKRPNLQFLTLDEVFPELSNAKVFSTVDAKKGFWQVVLDEASSRLT
FT                 TFWTPFARYRWVRLPFGISSAPEIFQMKMREVLDGLDGVECLADDVLIYGR
FT                 GETLEEAMNDHNRCLKQLFERLRQHNVKLNRSKLNLCQPSVKFFGHLLTDK
FT                 GLQADDSKISVIRNYPTPTDRKALQRFIGMLNYLSRFIPNLSSNLHALRKM
FT                 LSKNDTWLWNTECQQEFDKAKSLVADIENLQYYNVNKPLWIECDASSYGLG
FT                 VAVYQDSGVIGFASRVLTPTEQNYAQIEKELLAVLFACVRFDQLIIGNTQT
FT                 VVKTDHKPLVTIMQKPLLKAPKRLQHMLLNLQRYNIQLQFVSGKENVLADA
FT                 ISRAPEVPKENDSEFHKLHIYRVFGEVEDINLGSYLNISDDRINDILEQTS
FT                 QDKVLQTVVCYTKDGWPKKISDVPDLVRPFFKHRHEIGYQDGLVFRGDRVV
FT                 IPSSLRRKLVEKLHVGHPGIEASLRLARSNIFWPGMNDQIKNRIQECQTCA
FT                 KFAASQWKPPMKSHPIPVYPFQLVSMDVFFQVYQGKQRIFLVTVDHYSDYF
FT                 EIDILKNLSSSSVIQACKRNFACHGTPQMIVTDNGTNFVNEEMVKFSKSWD
FT                 FKHSTSAPYHQQANGKAEAAVKIAKHLIMKSAEDGQDLWLALQLWRNTPNN
FT                 IGSSPASRLFSRGTRCGIPMPATNLVPSVVKGVPEAIYENRQRIKYNYDKR
FT                 SRRLPVLDIGSPVYVQLRPESSKLWTPGTVSNTLGDRSYLVEVDGSNYRRD
FT                 AVNVKPRKESATPLTTTSDWMNMSSTSAALVAAPECTPSVTPIYSHERSQV
FT                 TSNDTSPTELLGPEVAQPSLSATPATASVQSETLQNDRPKRQTKIPSKFKD
FT                 FVVTIK"
XX
SQ   Sequence 4573 BP; 1357 A; 946 C; 1070 G; 1200 T; 0 other;
     tggtgtcaga agtggtcgcg tagtgctttg ttccattctg cgtaatattg gagtatccgg        60
     aaaagtattc cgttgtagtc gaaggaaatc ttccgttcta ggcctattga ttggggccag       120
     tttcgttttt gcctcctcac atctcatgca ttgatgtgtg tgtgtccatt gcaacggtcg       180
     gaaatatttg cccgacggcg tatgtggtag tgtgatcaga agtgcataaa acgtcggctt       240
     gtgttcgtgt cagtataccg aataaacaac caacatggaa gaacttcgtg ccctcctcgc       300
     aaggcagaat gaactgttcg ctgctttagc agaccgtgtg aataacatac aagtgaatgt       360
     gccggctatg atttcacctc agccggtacc gcagcctccc ctgttgtgct tagaagggga       420
     catgagcgag aactttgatt tttttgagcg taattggaac aattatgcca gtgcaatgag       480
     tatggatcag tggcctgaag atcaaaatcc gaaaaaagtt gggtttttat tatcagtgat       540
     tggatttgag gctcttcgaa aatatttcaa tttcgaattg acagacgaac aacgtcagtc       600
     tccaattgcg gctttggctg ctattaaagc taaggtggtt cgtgtgcgta atatgaactt       660
     ggatctattt gagttcctat ctgccaagca agagtctgag tcgatagatg agtttgtaac       720
     gaagttaaga gtgcttgcta aaccgtgtca gttgggagca ttagaggaga gattccttac       780
     atataaggtg gtcactgcca ataagtggcc acatctcagg aagcggttga ttacttctag       840
     tgacgtcact ctcgctaagg ttgtggatga gtgcaggctt gaagaagttt cagtgcgtcg       900
     attcatggct ctaggagccg agcgagagag tgaagtgaac tacatacaac cgagaagaga       960
     aaaggttgag aagaagagtt gcaagttttg tggaggacga cacattttcg aaaaaggtct      1020
     gtgtcctgca ttgggacaga agtgtcgaaa gtgtaaagca aaaaatcact ttgagaaaat      1080
     gtgcccaaca aataaaggtg cagttaagaa gcgaagagtg aaagaggttt cgattcactc      1140
     agacgatagt gatgagagcg aatcaaatgt gaacagtgaa tctgaagaat caagtgaaga      1200
     acgccagatc ggaaaaatct acaacaattc gtcgaaaggt ggacacgtat tggctgattt      1260
     acagttgaaa gtgaatggtc gctgggaaaa tgttgtgtgt gaacttgata cgggcgcaaa      1320
     cactagcctg atcggatata actggttgaa aaaactaact ggaaaaagga atccggagct      1380
     ctttccatct gaatttaaac tccagagctt tggtggcaat cccattccag ttcttggtga      1440
     agtgaaacta ccgtgtcgtc acaacgaaca gaaggtctcg ttgatattac aagttgtcga      1500
     cgttgatcat cggccgctac tctcagcgaa cgtttgtgat gttctaggct tggtgaaatt      1560
     ctgcaatacg gtatcatatg tgcgacctga aaaaccaatc agtcagtcag atgtgtggaa      1620
     agttcaccgt atcgaagcga accaaattgc gaatgacttc agtgatgttt ttaacgggta      1680
     tggaaggatc gaaggagaag ttttgcttga ggttgatcca gcggtaccgc cgctgattca      1740
     gcaaccacgg cgtatcccga tagcacttcg ggataaactg aaagtggagc tagacaattt      1800
     ggagaaaagc ggaattatcg tcaaagagca gcaacacacc acatgggtga acaacatcct      1860
     tctagtcaac aaaacagcat caggtgagtc gttcagaatc tgtctagatc cagtacccct      1920
     gaacaaggcc ttaaaacgac cgaatctgca atttttaacc ctggatgaag tttttcctga      1980
     gctctcgaat gcaaaggtct tctcaacagt tgatgctaaa aagggatttt ggcaagtggt      2040
     tttggacgag gccagtagta gattaacaac attctggacc ccttttgcga gatatcgttg      2100
     ggttcggcta ccatttggta tttcgtcagc gccggaaata tttcaaatga aaatgagaga      2160
     ggttttagat ggcttagatg gagttgaatg tctggctgat gatgttttga tatacggtcg      2220
     aggcgaaacg ttggaagagg caatgaatga ccataaccga tgccttaaac aactttttga      2280
     acgtcttcgg cagcataatg taaaacttaa tcgctcgaag cttaatctgt gtcagccctc      2340
     agtaaaattt tttggacact tgctgaccga taaggggctt caagcagatg actccaagat      2400
     ctcagtaata agaaactacc cgacaccaac agatcgtaaa gccttgcaac gcttcatagg      2460
     tatgctaaac tacttgagtc ggttcatacc aaatcttagt tcaaacttac acgctcttcg      2520
     caaaatgttg tccaaaaatg atacttggtt gtggaacaca gaatgccaac aagagtttga      2580
     taaggccaaa tcgctagtgg cagatattga aaaccttcaa tattacaacg taaacaagcc      2640
     tctttggatc gaatgtgatg ccagctctta tggattagga gtggctgtgt atcaagactc      2700
     cggggtgatt ggatttgcat ctcgagtact cacacccaca gaacaaaact acgcacaaat      2760
     tgagaaagag ctgttagcag tgttgttcgc gtgtgtgcgt ttcgatcagc ttattattgg      2820
     gaatacccaa actgttgtca agacggatca caagccgctg gttactatta tgcaaaagcc      2880
     tctattgaaa gctcctaaac gactccagca catgcttcta aatctccaac gatacaacat      2940
     tcaactacaa tttgtttctg gaaaagaaaa tgtgttggca gatgcgatat cacgtgcccc      3000
     cgaagttcct aaagaaaatg attcggagtt ccataaactc catatctacc gtgtatttgg      3060
     cgaagttgaa gacattaatt taggcagcta tctgaacatc tctgacgatc ggattaacga      3120
     tattctggaa caaacttcac aagataaagt gctgcaaaca gttgtttgtt acaccaagga      3180
     tggctggccg aagaaaatca gcgatgttcc agatcttgtg aggccatttt tcaagcatcg      3240
     ccatgaaatt ggttatcaag atggtctagt atttcgtggg gatcgagtcg ttattccaag      3300
     ttccctacga cgtaagctgg tcgaaaagct tcacgtcggt catcccggaa ttgaagcatc      3360
     tctcagactg gctagatcca acattttctg gcccggaatg aacgaccaaa ttaagaatcg      3420
     tatccaagaa tgtcaaactt gtgccaagtt cgctgcatcc cagtggaaac cacccatgaa      3480
     atcccatccc atccctgttt atcctttcca attggtttca atggacgttt tcttccaagt      3540
     gtatcaagga aaacaacgaa ttttcttggt aaccgtagac cattattccg actattttga      3600
     aattgatatt ctcaaaaacc tgtcgtcttc ttcagtgatt caagcatgta aacggaactt      3660
     cgcctgccat ggcacgcccc aaatgatcgt aacggacaac ggaacgaact ttgtgaatga      3720
     agaaatggtc aaattcagca agtcatggga tttcaagcac tccacctcag ctccatatca      3780
     ccaacaagca aacggcaaag ctgaggcagc agttaaaatt gcgaagcatc ttattatgaa      3840
     gtcagcggaa gatggtcaag atctgtggtt ggcactacag ctttggagaa atacaccgaa      3900
     caacataggc agcagtccgg cttcaagatt gttttcccgt ggaacacgat gcggtatacc      3960
     gatgccagca acaaacttgg taccaagcgt ggtcaaaggg gtccctgaag ccatctatga      4020
     aaatcgacaa aggataaaat acaactacga caaacggtct cgccgtctac ctgtactaga      4080
     cataggttct ccggtctacg tccagctacg accagaatca tcaaagttgt ggacgccagg      4140
     aacagtgagt aatacgctgg gagatcgatc gtatcttgtt gaggtggatg gttcaaacta      4200
     tcgacgagat gctgtaaacg tcaaaccacg taaggaatca gctacgcccc taacaacgac      4260
     ttcagactgg atgaatatgt catctacatc agcagctttg gtggcagctc ctgaatgcac      4320
     tccctctgtg acaccaattt attcccatga gcggtcacaa gtgacgtcga acgacacttc      4380
     tcctacggag ctactaggac cagaggttgc tcaaccatcg ttaagtgcta cgcctgcaac      4440
     tgcttctgtg caaagtgaga cgcttcagaa cgatcgtcct aaacgtcaaa ctaagatacc      4500
     atcaaagttt aaggattttg ttgtaacaat taagtagctt acccatcttg tttttcttgc      4560
     aaaaagggga gga                                                         4573
//
ID   Gypsy-25_AA-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   supercont1.308;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_AA_;
KW   Gypsy-25_AA-I; Gypsy-25_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.308; Positions   25477   25673.
XX
SQ   Sequence 197 BP; 56 A; 36 C; 36 G; 69 T; 0 other;
     tgttgtatta ccacttttgt ttaaattcat ccattgatat gcccctccca gtatgtaaca        60
     gatttgataa agattttcag tgtaggttca gttgatcagc gacgcgcatc ttgagcggac       120
     ataataaatg tactcggtta tacattatgt tttatttgat gctacgaaag ttcccatgct       180
     tgtaacggaa tacaaca                                                      197
//
ID   Gypsy-25_AnFu-I repbase;    DNA;    INV; 4394 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4394
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2910-2910 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..4358
FT                 /product="Gypsy-25_AnFu-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MATVEELCENFTKVGLIRQCEGLGLSAIGGKRDIAKR
FT                 IINHRNTTSSAGEKDDDDRDSQKDDVCENDDSPTKDAEREIDVMCEKDGSR
FT                 TDNEEFRSDDDDGLSIYDEDEEDDDTSEDEESGAMYHTAIRDDTSTPLPAT
FT                 RRCAPRRTKVYSFKDMEESIESFGAEEGEDLRIWLTQLKSVCKAARWDDEQ
FT                 QLIMCRKKLTGTAKRFVFSLRKSFSSFKKLEQALLKEFAPRIRASDVHRAL
FT                 TNRKKKSSESVRDYIYEMQRLALPIELDEPSLCEYIVNGITDDEYHQSVLY
FT                 EAQSIERLKKKLLNFEKVVKNSKNKSKREGLGSGKEKTRAVDKDNKKVNKK
FT                 PNCFNCGETSHVSAECPQKSEGPKCFSCNKFGHRARDCKKGDSSNQKDKQN
FT                 VLMCGPNEEKTHGVHSFSGVANQEDGSTSKKLVEKQVGLQRTIIPMKIGPL
FT                 VIDALFDTGSPMNLMTSNTYEMIGKPCLNTTTMKFKGFGGNEIAAIGVFKI
FT                 DVCIDCNQYFEMLFYLVPNESMSFAAVLGTASLEHFDVKVTTDGVQVLKRE
FT                 EYEMMGIETCVNEIDVPERYASDIKSLISNYVPNKEVKSSVEMKIIVEDEH
FT                 PVQTNPRRFAPKEKEALEKTINEWLEAKIIRESSSDFASPVVLAKKKDGSL
FT                 RVCVDYRELNRKIKKDCFPMRNMEDQIDKLQGAKVFTTLDLKNSFFHVPIE
FT                 KSSQKYTSFVTHTGQYEFLRAPFGLCNSPACFSRFVANAFRELIKSGEILV
FT                 YVDDLIIATNSEEENITTLKKLVKVASENGIDFNWKKSQFLKSEVEYLGYV
FT                 IKDGAYRISPDKIKAIRSFPVPRNPKELQRFLGLTGYFRKFIEGYAIMAKP
FT                 LTDLMRKNVEYEFKHVQLNCFERLKKCLTSDPVLKIYEEKAETEVHTDASK
FT                 EGFGAILLQRGADDHFHPVYYMSHQTNDAEKNYSAYHLEVLAVVRAVQKFR
FT                 VYLLGIPFKIVTDCSAFQHTFKAKELSARIARWALVLEEYDYKVVHRPGTS
FT                 MRHVDALSRVIMVVSNDPLLEMIIAAQKKDERISAIRQLLKTQTYDDYCMN
FT                 GEMVMKFVKGKEVIVVPTELQGEIIRKAHENGHFGVRKLEDVISRDYYIPN
FT                 LTEKIKRKIECCVSCLIAERKRGKIDGMLYPIEKGEVPFDTYHVDHVGPME
FT                 ATDKMYKYLFVVVDAFTKYTWIYPTKTTASNEVIQRLRNQSDMFGNPRRIV
FT                 SDKGSAFTSHSFKQYCEEENIEHHEIVTGVPRGNGQVERANQVILAMLTKI
FT                 CVNDSRKWYKHVGDVQKWLNLNVHQSTRITPFQAMFGVTMRYKEDLRLSEL
FT                 MEEIRVAQFHEERSAIRAEARSSIERAQATQKRNYDLRARQSTKYKVGDVV
FT                 VIQRSQYNPGKKTAPHFLGPYKVVETMPNDRYKVEKISGEGSQHTTTASSQ
FT                 MKKYLVEVTTE"
XX
SQ   Sequence 4394 BP; 1470 A; 771 C; 1108 G; 1045 T; 0 other;
     tgggggctca accgggatcg tgtgtggatt cgatattggt aaagtgaaag ttataaagtg        60
     aattacgacg aactaacgac gaaatggcga cagtggagga attatgcgaa aatttcacaa       120
     aagttgggtt aatacgccag tgcgaagggc ttggtttatc agccatcggt ggaaaacgag       180
     atattgcgaa aaggatcatt aaccatcgga atacgacgag ttccgcaggt gaaaaagacg       240
     atgacgatcg cgattctcag aaagacgacg tgtgtgagaa tgacgactca cccacaaaag       300
     acgctgaacg tgaaatcgac gttatgtgtg agaaagacgg ctcacgcacc gataacgagg       360
     agttccgttc cgacgatgat gacggcttaa gcatctacga cgaggatgaa gaggacgacg       420
     acacgagcga agatgaagaa tctggtgcta tgtaccatac ggcgattaga gatgatacat       480
     ctacaccact acctgcaaca cggcgatgtg ctccacgccg gacgaaagta tactctttca       540
     aggatatgga agagagtatt gaatcttttg gtgctgaaga aggagaggat ttaaggattt       600
     ggctgacgca acttaagagt gtttgtaaag ctgcgcggtg ggatgacgaa cagcaattaa       660
     ttatgtgccg caagaaatta accggaacag ccaaacgctt tgtgttttcg ctacggaaaa       720
     gtttcagcag ttttaagaag ttggaacaag cgctgcttaa agaattcgcg ccgcgcatac       780
     gtgcaagtga tgtgcaccgt gctctaacga accgtaagaa gaaatcatcg gaatctgttc       840
     gtgactacat ttacgaaatg caaaggttgg ctctccctat cgagcttgat gagcctagcc       900
     tttgtgagta tattgtcaac ggtattactg acgatgagta tcatcaatcg gtgctatacg       960
     aagcgcaaag catcgaacgg ctgaaaaaga aactgctcaa cttcgaaaaa gtagtgaaga      1020
     attctaagaa caagtcgaag cgagaggggc tgggaagcgg gaaggagaaa acacgtgccg      1080
     tcgacaagga taacaaaaaa gtgaacaaga agccgaattg tttcaattgt ggtgaaacgt      1140
     cacatgtttc cgcggaatgt ccacaaaaga gtgagggtcc aaagtgtttt tcatgcaata      1200
     agtttggaca tcgagcacgc gattgcaaga aaggtgacag cagtaaccag aaggataaac      1260
     aaaatgtgtt gatgtgtgga ccaaacgaag aaaaaacaca tggtgtacac tcattttcag      1320
     gtgttgctaa ccaagaagac gggtcaacgt cgaagaagct tgttgaaaaa caagtagggt      1380
     tacagagaac gataatacca atgaaaatag gaccgctcgt catagacgct ttgtttgata      1440
     ccggtagtcc catgaattta atgacgtcca acacatacga aatgatcggg aaaccctgtc      1500
     tcaacaccac cactatgaag ttcaaaggat ttggtggaaa cgaaatcgcg gcaattggtg      1560
     tttttaagat agatgtgtgt atcgattgta accaatactt cgaaatgctt ttctatctcg      1620
     taccgaacga aagcatgtct tttgcggccg tactcggaac cgcgtcgctt gaacattttg      1680
     acgtaaaagt aacgacggac ggtgtgcaag tgttgaagcg agaagaatat gaaatgatgg      1740
     gaattgaaac gtgcgtgaac gaaatcgacg taccagaacg atatgcaagt gatatcaagt      1800
     ccctgatttc gaactatgtt ccgaataaag aagtgaagag ttcagtggaa atgaagatca      1860
     ttgtcgaaga cgaacacccg gtgcaaacca acccaaggcg gtttgctcca aaagaaaaag      1920
     aagcgctgga gaaaacaata aacgagtggt tggaagcaaa aatcattcgg gaaagtagta      1980
     gtgattttgc tagtcctgta gtgctagcga agaagaaaga tggttcattg agagtttgcg      2040
     tagactaccg tgagctaaac cgaaagatca agaaagattg ttttccgatg aggaatatgg      2100
     aggaccagat cgataagctg caaggggcaa aagtgttcac aacgctggac ttgaagaact      2160
     ctttcttcca cgtgccgata gagaagtcta gccagaaata tacatcgttt gtgacacata      2220
     caggccagta cgaatttcta cgagctccat tcggtttatg taacagtcca gcatgtttta      2280
     gtcggtttgt agccaacgcg ttccgtgaac tgatcaaaag cggagaaata ttagtgtacg      2340
     tggatgattt gatcattgcg acaaacagtg aagaagaaaa cattactacg ttgaaaaaat      2400
     tggtcaaggt tgccagtgaa aacggaattg actttaattg gaaaaaatca caatttctta      2460
     agagcgaagt ggaatatttg ggatatgtga tcaaggatgg cgcctaccgc atttcaccag      2520
     ataaaataaa agcaatccgt tcttttccgg tgccaagaaa cccgaaagag ttacaaagat      2580
     tcctaggttt gacggggtat tttcgtaagt ttatcgaagg ctacgctata atggctaaac      2640
     cattaacgga cttaatgcga aaaaacgtag aatatgagtt caaacacgtg caactgaact      2700
     gttttgaaag attaaagaag tgtttgacgt ctgatccagt gctgaagatt tatgaagaaa      2760
     aagcggagac ggaggtacat acggatgctt caaaagaagg tttcggagca atattacttc      2820
     agaggggcgc cgacgatcat tttcatccgg tttattatat gagccatcaa acgaacgatg      2880
     cggagaaaaa ttacagtgcg taccatttgg aagtattagc cgttgtgcga gctgtacaga      2940
     aattccgtgt atatttgtta ggaatccctt tcaaaattgt tacagactgt tcagcttttc      3000
     aacacacctt taaagcaaaa gaactttctg cgcgcatagc tagatgggct ttagtgttag      3060
     aggaatatga ttataaagtg gttcaccgac caggaacgtc aatgaggcat gtagatgctt      3120
     taagtcgggt tattatggta gtatcaaatg atccgttgtt agagatgatt atagctgcac      3180
     aaaagaaaga cgaaagaatt tcagccatac gacaattatt gaaaacccaa acatatgatg      3240
     attactgcat gaacggtgaa atggtaatga agtttgtaaa agggaaagaa gtgatagtcg      3300
     tacccacaga actacaaggc gaaattataa gaaaagctca tgaaaacgga catttcggag      3360
     tgcgtaagtt ggaggatgtg ataagtcgtg attattacat tccaaatctc acagaaaaga      3420
     taaagaggaa gattgagtgt tgcgtaagtt gtttgattgc tgaacgtaag cgaggtaaaa      3480
     tagacggaat gttgtatccc atcgaaaagg gagaggtgcc gtttgacacc tatcacgttg      3540
     accacgtggg tcctatggag gctactgata agatgtataa atatcttttt gtagtggtgg      3600
     atgctttcac caagtacacg tggatatatc cgacgaagac gacagcttcc aacgaggtta      3660
     ttcagcgatt gcgaaatcag agcgatatgt ttggaaaccc acgaagaata gtcagcgaca      3720
     agggttctgc gtttacgtca cacagcttta aacaatattg cgaagaagag aatatcgaac      3780
     atcacgaaat agtaacgggc gtaccgcgcg gtaacggaca agttgagaga gcaaatcagg      3840
     tgattctagc catgttaacc aaaatatgcg taaacgattc tcgaaaatgg tacaaacatg      3900
     ttggagatgt acagaaatgg cttaacttaa atgtacacca gtctactagg atcacacctt      3960
     tccaagcgat gtttggagtg acgatgcgtt ataaagaaga tttgcgttta tcagagctca      4020
     tggaggaaat acgggtagcg cagtttcatg aggaacgtag tgctataagg gctgaagcta      4080
     gatcaagtat tgaaagagct caggctactc agaagcgaaa ttatgatctg cgcgctaggc      4140
     agtcaacaaa gtataaggta ggggatgtgg tcgtgataca aagaagccaa tataacccag      4200
     ggaagaagac agcgccacat tttttaggcc cttacaaagt tgttgaaaca atgccaaatg      4260
     atcgatacaa agtagagaaa attagtggcg aaggttcaca acatacaacg acagcatcga      4320
     gccaaatgaa gaagtatttg gtagaagtta ctacggaata acatccgagg cggatggttt      4380
     gtcaggagag gccg                                                        4394
//
ID   Gypsy-25_AnFu-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-227
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2838-2838 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 227 BP; 77 A; 42 C; 52 G; 55 T; 1 other;
     tgtggwtagg ttagaataaa aaaagatgat cgggctaccg ttctgtttgt tcgtcgggtc        60
     atgggaatta aacgagggga cccgatgtga caggacgcga tgacaggaga gacagttgca       120
     aatgaacagc cgtgaactat agacgtgtta taacgaatac caatattatg taaacaccgt       180
     tcccaaacca ataaaaaacc tggaattatc atccctttat cattaca                     227
//
ID   Gypsy-25_AnMe-I repbase;    DNA;    INV; 4902 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4902
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6837-6837 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..4889
FT                 /product="Gypsy-25_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNSPENSAADEQRRASQHWPTDFGASTSQQHHPPPGQ
FT                 NGTGPPSQNVAPAPSFLFPGAMPSSNEANTVVQVLQLLKQQMAQQQKLMEQ
FT                 LMSQQQVSFQPQQIDPPPQPTPSNPEQILDTIANQIVEFRFEPDSGITFEA
FT                 WFARYEELLTKDASRLEDAARVRLLIRKLGPTEHERLTNFLLPSLPRDFTF
FT                 DAIVDKLKKLFGKMESLLSKRYKCFNITKARSEDMLTFACRVNRACVDFEL
FT                 SKMTEDQLKSLVFVCGLREDEDAESRTRLLSRIEEKCDITLEQLSAECQRV
FT                 ANLKKDSAMIADCGERVLAVKSNHQRRYPYQPRNQYEGTSHSHFQSSTNGR
FT                 RTQQGWENNEKAKYDKPKNPCWLCGELHWMRECTFTNHKCRDCDQIGHREG
FT                 CCSTANRRRKYVHYNNANIRVVTVNVCQVQKKRKFVTVVINDQPVELQLDT
FT                 ASDITIISQSLWKXLGKPPLANSTVKAKSVSGANLQIDGEFQTDVRIGNTT
FT                 RQATIRVIDAEHLLLGADLVELFDLGSIPMDAFCNSISTEPVSKVLERKFP
FT                 AVFNGTGLCTKTCVQLQLKEGVHPVFCPKRPVAYAVQDMVDKELDRLAERG
FT                 IISPVDYSEWAAPVVVVRKANGNVRLCGDYSTGLNSALRPHEYPLPLPEDI
FT                 FAKLAHSKLFSKIDLSDAFLQVEVDPRHRPLLTVNTHRGLYTYNRLPPGIK
FT                 VAPAVFQQLADTMLAGISGVSCYMDDIVIGGSSEQEHDANLSEVLRRIEEY
FT                 GFTIRAEKCAFKVKQIHYLGYIIDTNGMRPDPAKIEAITRLPEPTDLTGVR
FT                 SFLGAINYYGKFVPNMRELRYPLDSLLKADTPFRWTKECRQSFNNFKTLLS
FT                 SNLLLTHYDPKQNIIVSADASSVGLGATLSHEYSDGSIRIVQHASRALTKA
FT                 EQGYSQIDREGLAIIFAVTKFHKMIYGRRFKLQTDHRPLLRIFGSKKGIPV
FT                 YTANRLQRFALTLLSYDFDIEYVRSESFGNADILSRLIRAHEKPEEDFLIA
FT                 SVSLEAEVKSIAASNLGAFPISFDVVVCETKSDPLLRKLYEYVQNEWPRNA
FT                 TXSGELSQYYHRKDNLSTIEGCILFGERVVIPERLRERCLLQLHRGHPGIQ
FT                 RMKAIARSYVYWPTINDDITDCVNACHPCALAAKSPNHTNPVHWPNTKTPW
FT                 ERIHVDYAGPLDGEYFLVVVDAFSKWPEIIKTQSTTSTATIGILRSLFARF
FT                 GMPVTLVSDNGTQFCSSEFEEFCLRSGVHHLTSAPYHPQSNGQAERFVDTF
FT                 KRALAKIRNNRTSLQESLDIFLQTYRTTPNFQNPQHQSPADVMFGRSIRTC
FT                 FELLRPPSKMQYESSMNTSRVFARDDLVYAKLYHRNGWKWVPAVVVQKRGN
FT                 VMYKLNTGQRMIISHVNQLKRRGNSIEQLDTETASALPLEVLLEAWNPSSS
FT                 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
FT                 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVSQPISANSRPQSSS
FT                 TVPLNPVLPAQPMEPVPHASRSSESKKVPLPRRSSRIKRVPRRLRPYFLS"
XX
SQ   Sequence 4902 BP; 1385 A; 1170 C; 1113 G; 1232 T; 2 other;
     gtggcgacga gaaaaaaaag tagtatagag acatatatac atatatatat atatatatat        60
     atatatatat atatatatat atatatatat atatatatac atacacatag acacatagaa       120
     ctacagtgca gtgcagtgaa attcggacgc cttggtgaat tgaagtgaaa attaagcgca       180
     aacggcgaag gatgaacagc cccgaaaact ccgctgcgga tgagcagcgt cgagcatccc       240
     aacattggcc aaccgatttc ggcgccagca cctcgcagca gcatcatccg cctcctggac       300
     aaaatggaac tggaccgcca tcgcagaatg ttgcccctgc gccatcattt ttattcccgg       360
     gggcaatgcc atctagtaat gaagcaaaca cggtagtcca agtgttgcag cttcttaagc       420
     aacaaatggc acaacagcag aaattaatgg agcagctgat gagtcagcag caagtttcgt       480
     tccagccgca gcagattgat ccgcctccgc agccaacccc cagcaacccc gaacaaattt       540
     tggacaccat tgcgaaccaa atcgtggaat tccgtttcga acccgattcg ggaataacat       600
     tcgaggcctg gttcgcccgc tatgaagagt tgctgaccaa agatgcttca aggctcgaag       660
     atgctgccag agttcgcctt ctgattcgta agttgggtcc cacggaacac gagagactaa       720
     caaattttct tttgcctagc ttgccacgcg atttcacctt cgacgccatc gtggacaaac       780
     taaaaaagct ttttggcaaa atggagtcgc ttctcagcaa acgttataaa tgtttcaaca       840
     ttacaaaagc acgctcggag gatatgctga ccttcgcctg ccgcgtaaac cgtgcttgtg       900
     tagattttga gttgtcgaaa atgacggaag atcaactcaa aagcctggtg ttcgtgtgtg       960
     gcctcaggga agacgaagac gctgaaagcc gtactcgcct tttgtctcgc atcgaggaaa      1020
     aatgtgatat cactctcgag cagctgtctg ccgaatgcca gcgagtggct aaccttaaga      1080
     aggacagtgc gatgattgct gattgcggtg aacgtgttct agcggtaaaa agcaatcatc      1140
     aacgacgtta tccgtaccag ccgcggaatc agtatgaggg cacgtctcat tcacacttcc      1200
     agtcgagcac caatggaagg cgcacacagc agggatggga gaacaatgag aaggcaaaat      1260
     acgacaagcc taaaaatcct tgttggctgt gcggagagct acattggatg cgtgagtgta      1320
     cgttcaccaa tcataaatgt cgcgactgtg atcaaatcgg ccatcgtgaa ggatgttgca      1380
     gcaccgcaaa tcgacgtcgc aaatatgtcc actacaacaa tgcaaacatt cgagtcgtaa      1440
     cagtgaacgt ctgccaagtt cagaagaagc gaaaattcgt cacggttgtc atcaatgatc      1500
     agccggtgga actacaactt gacaccgcat ccgatatcac aattattagc caaagtctgt      1560
     ggaagcwatt agggaaacca cctttggcca actctacagt gaaagctaaa tcggtttctg      1620
     gagcaaacct gcaaatagat ggcgagtttc agacagatgt tagaattgga aatacgactc      1680
     gccaagctac catcagagtc atcgatgcgg aacatctttt acttggcgca gatttagtgg      1740
     agctttttga tctaggctcc attccgatgg acgctttctg taacagcatc tctacggaac      1800
     cggtatccaa agtgctcgag cgaaaattcc cagccgtctt caatggtacg gggctatgta      1860
     ccaagacttg tgtccaactt cagctgaagg aaggtgttca tccggtgttc tgtccgaaga      1920
     gaccggtcgc atatgcggtg caggatatgg tcgataagga gctggatcga ttggcggaaa      1980
     gaggaataat ctctcccgta gattattcgg aatgggcagc tccagtggtt gtcgtcagga      2040
     aagcgaatgg gaatgtgcga ctctgtggcg actactctac cggattgaac tcagcgcttc      2100
     ggcctcacga atatccactg cccctaccgg aggacatatt tgctaaatta gcacacagta      2160
     agttatttag caaaattgac ctatccgatg catttttgca ggttgaagtc gaccctcgcc      2220
     accgtccact actcaccgtc aacacacatc gtggactgta cacctacaat agattgccac      2280
     cgggaattaa ggtagctcca gcagtcttcc agcagcttgc agacactatg ttagctggaa      2340
     tcagcggggt atcctgttac atggacgaca tagttatcgg gggctcgtca gagcaagagc      2400
     acgatgcaaa tctatcagaa gtattgaggc ggattgaaga atacggtttt acgattcggg      2460
     ctgaaaagtg cgcttttaag gtaaaacaga ttcactattt aggatatata attgatacaa      2520
     acggcatgcg ccccgatcct gcaaaaatag aggctattac gagactacca gagcctacag      2580
     acttgacagg agttcgttca tttttagggg ctataaatta ttatggcaaa ttcgtgccca      2640
     acatgaggga actgcgctac cccttagata gccttttaaa agctgatacg ccattccgtt      2700
     ggaccaaaga atgcaggcaa tcatttaaca atttcaaaac gctgctctcg tcaaatttgc      2760
     tattgacaca ttacgatcca aaacagaata taatagtatc tgcagatgca tcctcagttg      2820
     gtctgggtgc cactcttagt cacgagtatt cggatggttc cattcgtata gttcagcacg      2880
     catcgagagc gctcaccaaa gcagaacaag gctatagcca aatcgatcgc gagggtctgg      2940
     caatcatatt tgcggtcacc aaatttcata aaatgattta tggcagacgt tttaaactcc      3000
     agacggacca tcgtccgctg ttgagaatat ttggttcgaa aaagggcata ccagtatata      3060
     cggctaaccg actacaacga tttgcactta ctcttttatc gtacgacttt gatatagaat      3120
     atgtccgtag tgaatctttt ggcaatgccg atattctttc tcgattaata cgagcgcacg      3180
     aaaaaccgga agaagacttt ctgatagctt cagtgagctt agaagctgag gtgaaatcta      3240
     tcgctgctag taaccttggg gcttttccta taagcttcga tgtagtcgtt tgtgagacaa      3300
     aatcagatcc cctgttaagg aagctttacg aatacgtgca aaatgaatgg ccaagaaatg      3360
     ctaccatsag cggcgaatta tcgcaatact atcataggaa agataatctc tcaacaatcg      3420
     aaggctgcat tttattcgga gagagggtgg tcatacccga aagactaaga gaacgctgcc      3480
     tccttcagct tcatcgagga catccgggta tacagcgaat gaaggcgatc gctcgcagtt      3540
     atgtatactg gccaacaatt aatgatgata ttactgattg tgtaaatgct tgccatcctt      3600
     gcgcccttgc ggccaaatca cctaatcaca caaatcctgt acattggcca aatactaaaa      3660
     caccttggga acgtatccat gtagactacg cagggcctct tgatggcgaa tactttttag      3720
     tagtggtgga tgcattttct aagtggcctg agattatcaa gacacaaagc acaacctcga      3780
     ctgctaccat cggaatactc aggagtttat ttgcgcgttt tggcatgccg gtcacacttg      3840
     taagtgacaa cggaacacaa ttttgtagca gtgaatttga ggaattttgc ctgcgtagtg      3900
     gtgttcatca tcttacttct gccccgtacc atccgcagtc gaacggacag gcggaaagat      3960
     ttgtcgatac gttcaagcga gctctggcca agataagaaa taatagaacg tctctgcaag      4020
     aatctctaga tatattttta caaacatacc ggacgactcc taacttccaa aacccgcaac      4080
     atcagtctcc agcggatgta atgtttggca gatccattag aacatgtttt gagcttcttc      4140
     gtccaccttc caaaatgcag tatgaatcgt ctatgaatac cagcagagtt tttgcgaggg      4200
     acgatctggt ttacgcgaag ctttatcatc gcaatggttg gaaatgggtt cccgcagtgg      4260
     tagttcagaa gcgcggcaac gtcatgtaca aactaaacac aggtcaacgg atgattatca      4320
     gtcatgtgaa ccagttgaag cgccgcggca acagcatcga gcagcttgat accgaaactg      4380
     catccgcgtt accacttgaa gtgttgctag aggcatggaa cccatcgtca tcgtcatcgt      4440
     catcgtcatc gtcatcgtca tcgtcatcgt catcgtcatc gtcatcgtca tcgtcatcgt      4500
     catcgtcatc gtcatcgtca tcgtcatcgt catcgtcatc gtcatcgtca tcgtcatcgt      4560
     catcgtcatc gtcatcgtca tcgtcatcgt catcgtcatc gtcatcgtca tcgtcatcgt      4620
     catcgtcatc gtcatcgtca tcgtcatcgt catcgtcatc gtcatcgtca tcgtcatcgt      4680
     catcgtcatc gtccgtgtcg cagcccatct cggctaacag taggccgcaa tcgtcatcaa      4740
     cagtaccttt gaatcccgtt ttaccagcac aaccaatgga accggtcccg catgcttctc      4800
     gttcgtcgga atctaagaag gtacctctgc ctcgccgctc ttctcgtata aaaagagttc      4860
     cgcgaaggct ccgcccgtac tttctatcct aaagcgggga ga                         4902
//
ID   Gypsy-25_AnMe-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-341
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6862-6862 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 341 BP; 72 A; 79 C; 104 G; 86 T; 0 other;
     tgttgtggag acggacagcg tcgcgcaaca ttgtggctct gggttgttcg cagagtgcga        60
     cagccctgga cgtcacccga gctgtccgtc gagggcgacc gtgtgacgga gcgaaagggc       120
     cgcgccatcg cggctagggc acgacggccg ttcacccggg gcattcggtt ctcgggtgat       180
     caacgagtgc ggtaaccgtc acgcggctgc gccgaggttt ttacgtttca acaaatattt       240
     aatgtgttag gaataaagtt tgcatgtttc gtttgtaact ttttagttgt gcttagttca       300
     gtggtttatt caaataagtg aacggacatc cgaacacaac a                           341
//
ID   Gypsy-25_CQ-I repbase;    DNA;    INV; 4888 BP.
XX
AC   AAWU01010957;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_CQ_;
KW   Gypsy-25_CQ-LTR; Gypsy-25_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4888
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 429-429 (2011).
XX
DR   GenBank; AAWU01010957; Positions   42650   47537.
XX
CC   Positions [3897-4358] - Integrase core
CC   'CACTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           822..4865
FT                 /product="Gypsy-25_CQ-I_1p"
FT                 /translation="MEKFEIPAFRFKQMPPNEVRDEWARYKRQFQFLANAN
FT                 SVTNKTKLKNIFLARAGVDVQDVFSTMPDADVEERAGVDPFKVAIDHLDSY
FT                 FAPKHHDAYQRFLFWSMQPKDSDETLDKFLLRASDMANKCNFGATAQEAKE
FT                 ISVIDKAIQLAPPDLREKLLQKEVLTMDDVSKTISAHQAIKFQVGQMSNNG
FT                 EQPKPFREVNAVRNEAYGRTVCGRCGNYDHSYSDFSCPARPYPCGACGKRG
FT                 HFAKMCRTQKRHNFRNSREQTSDQRKRKFNEQTSTQRKRPRTEYVRKLDTR
FT                 SDEGKCTDFIFTVGDGEEFLWVSLGGVMVQMLIDSGSQKNIIDDTTWDKLR
FT                 NQGVAVSDARTKSHVNFRAYGHTEPLTVKLVFDATIGVEDKEHRTSTKATF
FT                 YVIAGGQQPLLGRTTAKELGVLALGLPSTQVPDVYRLQCEQKRQFPKMKGI
FT                 KVNIEIDPTVTPVAQHARRPPLALLNKIEDKLDSLLASDIIEQVREYSPWV
FT                 SPLVAVVKDNGEIRLCVDMRRANLAIKRETHLMPTFEDFLPRLKEARVFSR
FT                 LDVKDAFHQVELDESCRHITTFISHKGMFRYKRLMFGICNASECYQKIIEQ
FT                 ILAGCPNAVNYIDDILVFGRDEQEHDAALAKVMSIIKEKNILLNHLKCVFK
FT                 VTEISFLGHHISGKGIRPAEDKISSLRAFCAPKTAEELRSFLGLVTYIGRF
FT                 LPDLATATAPLRHLTHKGVQFLWEQEQEEAFRNLKSMICNLETLRYFDNTL
FT                 RTRVIADASPVGLGAVLVQFADRRNDSEVRIIGYASKSLSPTERRYCQTEK
FT                 EALALVWAVERFSVYLLGRHFELETDHKPLELIFSPSSNPCPRIERWVLRL
FT                 QAYRFTVQYRKGSSNIADPFSRLCNVEGGDDFDPDSKFLVLVIQESAAIDT
FT                 CELEEISQNDTELSAVRECIRNGNWNQPEARAYERFQGELGFVGDALLVRG
FT                 TKLVIPRALRSRMLALGHEGHPGETVMKKRLRDRVWWPGMDKDVVKYVTSC
FT                 EGCRLVGLPSKPEPMCRREMPARPWIDVAIDFLGPLPSGEYLLVIVDYFSR
FT                 YKEIEIMKRITAEETTCRLHTIFTRLGYPVTITLDNARQFISTHFDEYCKL
FT                 HGIQLNYSTPYWPQENGLVERQNRSLLKRLQISHATGRNWKEDLNDYLMMY
FT                 YTSPHATTGKTPTELCYGRTIRSKIPSITDIESTPNMDDVRERDQLLKQKG
FT                 KESEDRKRRAKESDLQVGDSVLMKNLLPGNKLTPTFDPSEYLIVNKEGPRV
FT                 TLQNKVSNKIYERNVTHVKRIPPAEPEEPSHQELSPDDLSLARDAHAELMS
FT                 SPPVEDSQTPNVYRSRRNVKPPAKYRDYVISRTESN"
XX
SQ   Sequence 4888 BP; 1364 A; 1242 C; 1318 G; 964 T; 0 other;
     agtggcgact gtggatggga tccgaaacgg taacggtaag aatagtttca acacctttcg        60
     agtggtgcaa ggacggaaag caaacaacga aggtcggggt gaagcagcac acattttcgg       120
     aagggagaag cccaagcaaa aaaaaaaaaa aaaccagaaa caggagcttc gagctcgggg       180
     aattgagcca cgagctcggg ggggaattga gcttcgagct cggggaaatt gagccacgag       240
     ctcggggaat tgagcttcga gctcgggata ttgagcttcg agctcgggaa taatgagctt       300
     cgagctcggg atattgagct tcgagctcgg gaataatgag cttcgagctc gggatattga       360
     gcttcgagct cgggatattg agcttcgagc tcgggaataa tgagcttcga gctcgggata       420
     ttgagcttcg agctcgggaa tatggagctt cgagctcggg atattgagct tcgagctcgg       480
     gacattgagc ttcgagctcg ggaatattga gcttcgagct cgggacattg agcttcgagc       540
     tcgggacatt gagctgcgag cttgaaatgg agcttcgagc tcagaaccca accgggaatt       600
     ctacaacaaa ttttaacaac ggcagttgat aaactcgggg gcaataactc aaataataat       660
     cttaatttcc cgtctcacac agacaacaat cggtgctcta ccaggacgaa acaagacagc       720
     ttatctacca gcccagagtt gctaaagcaa ccaggtaaac actaagaatt acgggaagta       780
     aacaagaata caattgagaa ttttgttcta gaacccccac tatggagaag ttcgaaattc       840
     cggcattccg gttcaagcag atgcccccga acgaggttcg cgatgagtgg gctcggtata       900
     aaagacagtt tcagttcctg gccaatgcca actccgtaac aaacaagacc aaattgaaga       960
     atattttcct cgctcgggct ggagttgacg tgcaggatgt attcagtacc atgcccgacg      1020
     cagacgtcga agaacgcgcg ggggtcgacc cgttcaaagt tgctatcgat cacctggact      1080
     cgtatttcgc gccgaaacat cacgatgcat accaacgatt tctattctgg tccatgcagc      1140
     cgaaggacag cgatgagact ttggacaaat tcttgttgcg cgcgtcagac atggccaaca      1200
     agtgcaactt cggggccacc gcacaagaag caaaagaaat cagcgtgatc gacaaggcca      1260
     tccagctagc gccaccagac cttcgtgaaa aactcctcca aaaggaagtc ctgacaatgg      1320
     acgacgtgtc caaaaccatc agtgcacacc aagcgatcaa gttccaagtc ggtcagatgt      1380
     ctaacaacgg agaacagccc aaaccgttcc gcgaagtgaa cgcagtccgg aatgaggctt      1440
     acgggcggac tgtctgcggc agatgcggaa attacgacca cagctactcg gacttttcgt      1500
     gtccagcgag accgtacccg tgcggcgctt gtggcaagcg cggacatttt gccaagatgt      1560
     gtcgcacaca aaagcggcac aacttccgca actcccgcga gcagacatcg gaccaacgta      1620
     agcgtaaatt taacgagcag acatcaacac agcgtaagcg accaaggacc gaatacgtac      1680
     ggaagttgga cactcgatcg gatgaaggta aatgtacaga tttcatcttt acggttggcg      1740
     atggcgaaga gttcctctgg gtgtcgctgg gaggtgtcat ggtgcaaatg ctaatcgact      1800
     ccggaagcca aaagaacatc atcgatgata ctacctggga caagttgagg aaccagggag      1860
     tcgcggtctc cgacgctcga acgaaatcgc acgtgaactt ccgggcttat ggtcacacag      1920
     aaccacttac ggttaagctg gtgttcgacg ctacaatcgg agtagaggac aaagagcata      1980
     gaaccagcac caaagcgact ttctacgtga ttgccggcgg gcagcagccg ctactggggc      2040
     gcaccaccgc caaagagctt ggtgtgttag cgttgggttt gcccagtact caagtcccgg      2100
     acgtctaccg actccaatgc gagcagaaac gacaattccc gaagatgaaa ggaatcaaag      2160
     tgaacatcga aatcgatccc actgtaacac ctgtcgcaca acacgctcgc cggccgccgc      2220
     tggccctgct taacaagatc gaagataagc tcgactcttt gttagcgtca gatatcatcg      2280
     agcaagtacg cgagtacagc ccgtgggttt cgcccctcgt cgcagtcgtt aaggacaacg      2340
     gtgaaatacg gctctgcgtg gatatgagaa gggcaaacct cgccatcaag cgggaaacac      2400
     acctgatgcc gacgttcgag gatttcctgc cacggctcaa agaggctcgc gtgttcagcc      2460
     ggttggatgt gaaggacgcc ttccatcagg tggagctcga tgaatcgtgc cggcacataa      2520
     cgacgtttat atcacacaaa gggatgttcc gttacaagcg cttgatgttc ggcatctgca      2580
     acgcctccga atgctaccag aaaatcatcg agcaaatcct ggcaggctgc cccaacgcgg      2640
     taaactatat cgacgatata ctagtcttcg gccgggacga gcaggagcac gacgcggcgt      2700
     tggccaaggt catgagcatc atcaaagaaa agaacatcct cctcaaccac cttaagtgcg      2760
     tattcaaggt caccgaaatc agttttctcg gacaccatat ctcaggaaag ggaatcaggc      2820
     cagcagaaga taaaatcagc tctctcagag cgttctgtgc accaaaaact gctgaagagc      2880
     ttcggagttt tcttggtttg gtgacgtaca tcggaaggtt cctcccggat ctggctacag      2940
     caacggcacc actgaggcac ttgacgcaca aaggagtaca atttctctgg gagcaggaac      3000
     aggaagaagc gtttcgaaat ctcaagagca tgatctgcaa tctggaaacg ttgagatatt      3060
     tcgacaacac actccgcacg cgcgtgatcg cagatgcttc ccctgtaggt ctgggcgcag      3120
     tgcttgtgca gttcgcggat cgcagaaacg attcagaggt ccggatcatc gggtacgcca      3180
     gcaaaagctt gagccccacg gagagacgat attgccagac ggaaaaagaa gctcttgcgc      3240
     tggtctgggc ggtcgaacga ttctcggttt acttgttggg ccgacatttc gaactggaga      3300
     cggaccacaa acccttggaa ctgatatttt ctccaagctc gaacccctgt ccgcggatcg      3360
     aaaggtgggt gctacgttta caagcctacc ggttcacagt ccagtacagg aagggcagca      3420
     gtaacatagc ggacccgttc tcgaggcttt gcaacgtaga aggtggagac gatttcgacc      3480
     cggacagtaa gttccttgtt ttggtcatcc aagaatccgc cgccattgac acgtgcgaac      3540
     tggaggagat ctcacaaaac gacacggaac tgtcggcggt ccgcgagtgt atccggaacg      3600
     gcaactggaa ccaaccggaa gcgagggcgt acgaaaggtt ccagggggaa ctcggttttg      3660
     tcggagacgc cctgctggtt cgtggaacta agctggtaat accgcgggcg ttgcgcagca      3720
     ggatgcttgc cctagggcac gaaggacacc cgggcgagac cgtgatgaag aagcgcctga      3780
     gagaccgcgt ctggtggcct ggaatggaca aggacgtcgt gaaatacgta acgagctgcg      3840
     aaggctgcag attggtaggt ctgccgtcca aaccagagcc aatgtgtcgt cgagaaatgc      3900
     ccgccaggcc gtggatcgat gtcgccatcg attttctagg ccctctccca tccggtgagt      3960
     acctccttgt tatcgtcgac tattttagcc ggtacaagga gatcgagatc atgaaacgca      4020
     tcacggcgga ggagaccaca tgccggctgc atacgatctt cacgcgtctc gggtacccgg      4080
     tcacgatcac gctggacaac gcaaggcaat tcatcagtac gcatttcgac gaatactgca      4140
     aacttcacgg gatccagctg aattactcga ccccgtactg gccgcaggag aatggtttgg      4200
     tggaacgcca gaaccgttct ctcctcaagc gattgcagat cagccatgcc acgggacgga      4260
     actggaaaga agatttgaac gattatttga tgatgtacta cacaagccct catgcgacga      4320
     ccggaaaaac ccctacggaa ctatgctatg gcaggacgat caggtcgaag atcccctcta      4380
     tcacagacat cgaatcgacc cccaacatgg atgatgttcg tgaaagagac cagcttctga      4440
     aacaaaaggg aaaggagtcc gaagaccgga aacgacgcgc caaagaatct gacttgcagg      4500
     ttggtgactc ggtgctgatg aaaaatttgc tgccaggtaa caagttgacc ccaactttcg      4560
     atcccagcga gtacttgatc gttaacaaag agggacctcg agttacgttg caaaacaagg      4620
     tctcaaacaa aatctacgag cgaaatgtga cacacgtgaa acgaatccca ccagcggaac      4680
     cggaagaacc atcacaccag gaactatcgc cagacgacct aagtctcgct cgcgacgccc      4740
     acgctgaact catgtcatcg ccgccggttg aagactctca aacgcctaac gtttacagga      4800
     gccgccgaaa cgtgaagccg ccagctaagt acagggacta cgtcatttcg cgaacagaat      4860
     caaattagta tctagagaaa aaacgaga                                         4888
//
ID   Gypsy-25_CQ-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   AAWU01010957;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_CQ_;
KW   Gypsy-25_CQ-I; Gypsy-25_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-211
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 430-430 (2011).
XX
DR   GenBank; AAWU01010957; Positions   42439   42649.
XX
SQ   Sequence 211 BP; 68 A; 37 C; 68 G; 38 T; 0 other;
     tgtagtactc gacacgaggt gagaaagtga agcctactta ggggaagaga ataaactata        60
     ggacgggaga gagaagggac caccctgtgg tagcgaggaa gtgtttgggg agacaggcag       120
     tggagtggaa gtaagagtgg aataaagaag cattcaggag catcacctcg acggatttta       180
     ttcccaccgg aatacccggc agattctcac a                                      211
//
ID   Gypsy-25_DAn-I repbase;    DNA;    INV; 7128 BP.
XX
AC   AAPP01019973;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DAn_;
KW   Gypsy-25_DAn-LTR; Gypsy-25_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7128
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019973; Positions    7526     399.
XX
CC   Positions [6202-6678] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2213..3712
FT                 /product="Gypsy-25_DAn-I_2p"
FT                 /translation="MAVRHSLENPAEGVGEQETICSTCREPTSSNDMLATT
FT                 PCNHKFHYSCLMPLLQVKSICPVCSSSCSVNRLSLTNNNVTVEINEAEALG
FT                 EMLDPSLEPIRANPYNRGKGAIARKGVQTRSMQRKGQSSDSYLESDNHREG
FT                 LGRTEITDLVQSCIQAQQNNMLQNISQIINSSIEQALKSKMTSLNIESTEQ
FT                 DQRSPSVPRCFDDYQSQLPPIQRNISHHSETSAGNSRTSSISPEKVANIIQ
FT                 GWRIKFDGARNGMQVEDFLYRIRSLTAQNLGGDYQLLCDHLYLLFAGKANE
FT                 WFWKFHRSRPNFSWQTFQQEFREKFQEVDSDMDIWDLINVRRQSEHEPFEE
FT                 YQFAVETLLGRLKIPISEQSTVRILIRNAKISLRYELMHLGINTIARLREE
FT                 IRTHEQFQKHVKAQSLKPKIPNRSVSELFGTSADELEMEVDEIHKRKMVCW
FT                 NCQKPGHRFDDCMEVRSVFCYGCGAKDVYKPKCSRCNPSENRQRDAQNTTY
FT                 LTHP"
FT   CDS           4120..7050
FT                 /product="Gypsy-25_DAn-I_1p"
FT                 /translation="MSNHQLKKCSGNIRTANNNKCPVVGKYVTNISYRDKI
FT                 RPIEFYVIPTLSQDVYLGIDFWKSFNLINHLISPKVAELDTERDEQKGSPK
FT                 IHLLSPDQQNNLDKVISKFPSFDREGLGRTHLMEHVIEVGEAKPVKQRHWP
FT                 ISPAIEKLMFEEVDRMLELGIIEESKSPWSSNSVIVKRGEKIRLCLDSRVV
FT                 NKVTIKDAYPLPHIDGILSRLPPARYITGLDMKHAFWQIPLEQNSRQYTAF
FT                 TVPNRPLYQYKVMPFGLCNAPQTLCRLMDLVIPAHFRTRVFVYLDDLLILS
FT                 EDFESHMQLLQEVAVCLRKANLTINVAKSNFCMREVKYLGFIIGYGQLKTD
FT                 NEKIMAINEFPVPTSVKQLRRFLGLTGWYRRFVDNYATVSFPLTQLLRKNR
FT                 QLEWTQEADKAFAELKGKLTSAPILHTPDFSRPFILLCDASIYGVGCVLAQ
FT                 ANANGDEMPIAYMSEKLTKAQRNYTVTELECLAVVRGVKKFRAYIEGLEFT
FT                 VVTDHASLKWLMEQKDLTGRVGRWAVKLQPFAKQMKIEHRRGTLNVVADTL
FT                 SRQHEPAVSEIKDFGPLIDLTSVEFKSAEYTDLIENIQRNQSKLPDLKIMD
FT                 NFVYKRVEQATGDVVQEMNSWKLWVPSNLRQGTLYRSHAPPDAAHCGIGKM
FT                 VANLKRFFFWPGMVSQIRDYVLKCSVCRTTKSPNVVLKPPMGKPLTSDRPF
FT                 QKLYMDLLGPYPRSKSGNIGILVIVDHYTKFHFLHPIKKFTSSRICEFLET
FT                 SVFYTFGVPETILTDNGSQFRSAEFKSFLTRFGTKHICTAIYSPQANTSER
FT                 LNRSVLAAIRAYIGTDHSNWDRHLPEISGALRANIHQSTRFSPYFMTFGQN
FT                 MVLHGKDYELLRNLNLLKDNTEIQRTDALQCIRNKAKNNISLAHEINAKVY
FT                 NLRTRSVEFKNGEEVLARNFAQSNASKKFNAKLAPLFIKAKVKKKVGRSYY
FT                 ELVNESGKILGTYHLKDIQVIK"
XX
SQ   Sequence 7128 BP; 2285 A; 1357 C; 1427 G; 2059 T; 0 other;
     gtgcagtgca gtttttttca tgaatttatt acccccccag tgccacgtgc cagtgcggct        60
     agtaccaaat tatgtaagcg gctagcacca gtttttttta atcggctagt acaggattat       120
     gtaatcgtct agcaccctat tatgcaaccg gctatctgga ggccgaaatg gatgaaatat       180
     gggaattaac tagtgcagag attcgacgcg ggatcgcaat cttttgataa atattttttg       240
     gattcgacga caagcccctt ttcgctacac ggagagaaaa ctccagcgaa ttattgataa       300
     atttgtaact ataagaagtg caattatgtg aatattggcc tgctgaattt tattcaaagc       360
     tcaaatccct tttgttaatt atgaaattat tctgcggaaa gaaagaatat tgtatcttaa       420
     ttcgaatttt gcacaccctt cagttttttt aaataattaa tatcttaata tccgttgtta       480
     ttttattata aatatataga tttatgtaaa tatatatata taagtgatat gaaattataa       540
     ggaaagaatt tagattgaat taaataatga taactttgcg ataatattcg agcatggcca       600
     ggctaattta ttgttctatt taaattaata attataaaca tctctagcta ttcctgtcct       660
     tgagctcaac ggcggcgaac atcggtgagt gaatatccct aaattaaatt ttaatatttt       720
     gcgaagcaaa cagtaaattt tagcaaggca tgaattggat aattttggat tgataataat       780
     tttaactaat gaaatcgcaa attttgtaat tcctaattta attactacat taatcccaaa       840
     cgtagttaaa ctgatttatt gaatttaacc caatattttt aaatctcttc tttatatcta       900
     aatataaatt tatatatata tatattaata tgaattctaa tgaaattata taaagtagct       960
     gttaaggaga aattttataa tgaaatagaa atacccgact gggaaaaatg aatcaagttc      1020
     gctccaattt aaatttgagt gttaggaact ccatgaaggc ttaaggccat tacagatccg      1080
     ccaccgaaac ttcaaatagc catgctggaa ccacaatagg tatcacatag gattgtgata      1140
     tggggcgaat caaacgtcgt agatctcgcc aaggtcgggt gggttaagaa tagggtataa      1200
     tgaacatcta ataccctaca actgatcaaa gtcattctct ctctctttct tctgagcctg      1260
     tttgcctttt aggtgatttg tttccttagt tttcttttgg atttgagtca gtaagataat      1320
     catccgggtt ttcgttatta atttgcatct agttagtgca cttaaattta ttttgatgat      1380
     gtgtagtatg gatacgtgaa agaaccaccc catccgtcga gcttagtcta agaccacaag      1440
     aagtgcacgc ccttcactcc catccatacg tccccaaggt atatcctctg gaccttgcag      1500
     tagatcttgc aatttggttc tgtttaacta cagcccgtac acccccacgt tagaagttgg      1560
     ctaacaacgt aggaagttcg aaccacaccc acacattaca aaattggcgc ccaacgtggg      1620
     gcctggttag agttatctag tcagtttcct tttttttcat atcgtctttt gtggaactgc      1680
     aagaggctag agttttttgg catcttgacc cattagacaa tgatatatcg tagtagtatt      1740
     tttttttagt aaaacctatt agatctgttt aacttgaatt tcgatggaat tcaccaactg      1800
     ttcgtcttta ggaattgcga ttgcagttca gcagcttgga ctgatcgacc agagcgactc      1860
     ttgtgtgtaa cttgacttct ccaagttgaa taatttcaga tttatcaggt ccgaataata      1920
     gattctggtt aggaatcgca agacgctgaa agagttttag ctcttgacct actggatgta      1980
     catattatcg gaagttttac gagtcagtaa ttttttttag tgtatcccca aacagtatca      2040
     gagaaagaga gatttgatca gttaagtgtt tcagcacatt tcggatttcc gaaaagcgct      2100
     atacgaattt tggtggcgga ttggttttga tttttttatt tggcgtaatt ttaattttgg      2160
     agttttatag taattttttt tatatattga atagataatt tgatatttta ccatggcagt      2220
     acgacacagc ttagagaatc cagctgaagg cgtaggagag caggaaacta tttgttccac      2280
     ttgtcgcgaa cctacgagtt caaacgatat gttggctacg actccctgta atcataaatt      2340
     tcattacagc tgtttaatgc cacttttaca agttaaatca atttgtcccg tttgcagcag      2400
     tagttgctca gtgaaccgac tatcccttac taacaataac gtaacggttg aaataaacga      2460
     ggcagaggcc ttaggagaaa tgttagatcc cagtcttgaa ccaattagag ctaatccata      2520
     taacagaggg aaaggtgcta tagcaagaaa aggggtacag acaaggtcta tgcaacgtaa      2580
     gggacagtca agtgactcat acctcgagag cgacaaccat cgagaaggat taggcagaac      2640
     cgaaataacg gatttagtac aatcatgcat acaagctcaa caaaacaaca tgttgcagaa      2700
     tatatcccaa attattaact catcgataga acaagctcta aaaagcaaaa tgacttccct      2760
     taatatcgag tcaacagaac aggatcaaag gtcacctagc gttccccgat gctttgacga      2820
     ttaccaatcg caattaccac ccattcagag aaatatcagt catcatagtg agacatcagc      2880
     cggaaattct agaacgtcca gtatttcccc cgaaaaagtc gctaacatta tacaaggctg      2940
     gcgaattaaa ttcgacggtg cgcgaaacgg catgcaagtc gaagacttcc tatatcgtat      3000
     tcgctccctt acagcacaaa atttaggagg cgactatcaa cttttgtgtg atcatttgta      3060
     cttgttgttc gcaggaaagg cgaatgaatg gttttggaag tttcatcgtt ctcgtcctaa      3120
     tttctcttgg caaaccttcc aacaggaatt tcgcgaaaaa tttcaggaag tggactccga      3180
     tatggacatt tgggacttga tcaatgttag acgacagtca gaacacgaac cattcgaaga      3240
     ataccagttc gctgtagaaa ctttgttagg tagactaaag attcccatat ccgaacaatc      3300
     taccgtacga attcttatca gaaatgcaaa gatatcgtta cgttacgagt tgatgcattt      3360
     aggtattaac accattgcta gattacgtga agaaattcgt actcacgagc aatttcaaaa      3420
     gcacgtcaag gcccaatcct tgaaaccgaa gataccaaat cgttccgttt cagaattatt      3480
     tggcacttca gcagatgaac tagaaatgga agtagacgaa atccataaga ggaagatggt      3540
     ttgctggaat tgtcagaagc caggtcatag gttcgacgat tgtatggagg tccgatcagt      3600
     attttgttat ggctgcggag ccaaagatgt ttataagcca aaatgctctc ggtgtaaccc      3660
     gtcggaaaac cgtcagcggg atgcgcagaa caccacctat ctgacgcatc cttaaaatcc      3720
     aaaccaatag ttaaagaaaa ttattctcaa acggaattta caacacctat tccagagaat      3780
     aacaaagttc aggaagaggc agagcccctt tgcgcagtca ccgaacatca ctcattcgta      3840
     cctctacacc ttcgatggaa aaggtacaat gaagcaaagt gtcgcatatt cggatacccg      3900
     aagacgacgg ccaaactgaa accaagacgt tcaaccactc ggttgaagtt attttggaaa      3960
     aatgttacca ataccaggaa aaagttagtt tcatctatat tttttaactc cgatgatagg      4020
     ttgtataccg atattattat aggagaaagg aactatgttg cattactaga ttcgggagca      4080
     tcagtaagtt gcttaggcgg aaaagcagct accgaaatta tgagcaatca ccaacttaaa      4140
     aaatgctcgg gaaatatccg aacagccaat aataataaat gtcccgtggt agggaaatat      4200
     gtgactaata tttcttaccg tgacaaaata agacctattg agttttatgt tatcccaaca      4260
     ttaagtcagg atgtttattt aggcattgat ttctggaaaa gcttcaactt aatcaaccac      4320
     ctaattagcc ctaaggttgc agaattagat actgagagag atgaacaaaa gggaagccca      4380
     aaaatacacc ttttgtcacc tgatcaacaa aacaaccttg ataaggtcat cagtaaattt      4440
     ccatcgttcg atagggaagg cttgggtcgt actcatctca tggagcacgt catcgaggta      4500
     ggcgaagcaa agccagtaaa gcagagacat tggcctatat cccctgcaat tgaaaaatta      4560
     atgtttgagg aagtagatag gatgttggaa ttaggtatca tagaggaatc gaaaagccca      4620
     tggagtagta acagtgtcat tgtaaaacga ggagaaaaga ttcgtctttg cctcgattcc      4680
     agagtggtca ataaggtaac tataaaggac gcctatccac taccacatat tgacggaatt      4740
     ctcagccgtt taccaccagc acgttacata accggcttag acatgaagca cgctttttgg      4800
     cagatccctc tggaacaaaa ctctcggcag tacaccgcgt tcacagttcc gaacaggcct      4860
     ttataccaat ataaagtaat gccttttggt ctgtgcaatg cacctcagac actttgtaga      4920
     ttaatggacc ttgtgatccc ggctcacttt cgtacaagag tttttgttta cttagacgat      4980
     cttcttatct tatcggaaga ctttgagtcg cacatgcagc ttcttcaaga agtggctgta      5040
     tgtctaagga aagccaattt gacaataaac gtcgctaagt ctaacttttg catgcgagaa      5100
     gtaaaatatt taggattcat cattggatat ggtcagctta aaacagacaa cgagaaaatt      5160
     atggctatca atgaattccc cgttcccact tccgtcaagc aactgcgacg atttttaggt      5220
     ttaacaggat ggtatagacg ctttgtagac aattatgcaa ctgttagttt cccgttaact      5280
     cagttgctac ggaaaaatag acaattagaa tggacccagg aggcagataa agcatttgct      5340
     gagttgaaag gaaagctaac atcagcaccg atactgcaca ctcccgattt ttctagaccc      5400
     ttcatactac tgtgcgatgc aagtatatat ggagtgggat gtgtcttggc acaagccaat      5460
     gctaacggcg acgaaatgcc gattgcctat atgtccgaga aattgacaaa agcgcagcgc      5520
     aattacacag tgaccgaact agagtgcttg gcagtagtca gaggtgtgaa gaaatttaga      5580
     gcgtatattg aaggtctaga gtttacagta gtcactgatc atgcatcatt gaagtggcta      5640
     atggaacaga aagatttgac aggtcgcgtg ggtcgatggg cggtcaagtt acagcctttt      5700
     gccaagcaga tgaaaattga gcataggcgt ggaactctaa acgtagtagc tgacactctt      5760
     tcccgtcaac atgaaccagc ggtatctgaa atcaaagact tcggtccatt gatagatttg      5820
     acctcggttg aatttaaatc agcagaatac acggatctga ttgaaaacat ccaacggaat      5880
     cagtctaagc taccagatct caagattatg gataattttg tttataaaag agtagagcag      5940
     gccactggtg acgttgtcca agaaatgaat tcatggaaat tatgggtacc ttcaaactta      6000
     agacaaggga ctttatacag atcacatgcc cccccagacg cagctcattg cggcattgga      6060
     aaaatggtag caaatctaaa aagatttttc ttttggccag gaatggtttc gcaaattcgg      6120
     gattacgttt tgaagtgttc cgtatgtcgc acaacgaaaa gcccaaacgt agtgttgaaa      6180
     cctccgatgg gaaagccgtt aacgtcagat aggccctttc aaaaattgta catggattta      6240
     ttaggcccgt atcccagatc aaaaagtggg aatatcggca tactagtcat agtagatcat      6300
     tatactaaat tccatttttt acatccgatc aagaagttta cttcgagccg gatttgtgaa      6360
     tttctcgaaa cttcagtatt ttataccttc ggtgttcctg agacgatttt aaccgataat      6420
     ggctcacagt tccgatcggc cgagttcaaa tcatttctga cccggtttgg aaccaagcat      6480
     atttgtacag cgatctattc gccccaggct aacacaagcg aacgcctaaa taggtcagtt      6540
     ctcgccgcaa tacgcgcata catcggcacc gatcattcca attgggatag acatctgccg      6600
     gagataagcg gagcccttag agccaatatc catcaaagta ctagattttc gccttacttt      6660
     atgaccttcg gtcagaatat ggtccttcac gggaaagact acgaactgct gagaaatttg      6720
     aatcttttaa aagacaatac ggaaatacag cgtactgacg ccttgcagtg tattcgaaat      6780
     aaagctaaga ataatatatc tttggctcat gaaataaacg ctaaggttta taatttaagg      6840
     actagatcgg tagaatttaa aaatggtgaa gaagtccttg ctcgtaattt cgcacaaagt      6900
     aatgccagca agaagtttaa cgctaaatta gcacctctct ttattaaagc taaagtgaaa      6960
     aagaaagtag gacgttctta ttatgaactg gtaaatgaat cagggaaaat tttaggaacc      7020
     taccacttaa aggacattca agtaataaaa taaaataaaa tattagtaga tattagtgat      7080
     ttcagttaat gacccctgct aataagattt ttggagcatt aactgtgg                   7128
//
ID   Gypsy-25_DAn-LTR repbase;    DNA;    INV; 394 BP.
XX
AC   AAPP01019973;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DAn_;
KW   Gypsy-25_DAn-LTR; Gypsy-25_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-394
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01019973; Positions     398       5.
XX
SQ   Sequence 394 BP; 130 A; 59 C; 82 G; 123 T; 0 other;
     tgtagtgtgt ggatttccaa cagggcacgc atgcgaagag cggtcataag atagacatag        60
     aaaagcttaa aagcttatca ccgaatatca ttgatctgcg gtcaccttgg ataagtgaac       120
     gaaacatcac gcgattctta tctatgtttt tgcatatcga gataagagtg ccgttatgta       180
     aaagcttttt ctctagcata gttagggcta ggtttgcata ggagagcttt gacatttttt       240
     gacgagcttg aaagcaatac ggctgcaatt gtaagccaag tttaataaat atttaaattg       300
     tgctgaaaat taaataaaaa caaatcccag acgaattatc gggattcatt taataagtgt       360
     ttagttaatt tatgccaggt atgttataaa ttca                                   394
//
ID   Gypsy-25_DBp-I repbase;    DNA;    INV; 3149 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3149
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 694-694 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(38..304,292..1113,1053..1481,1511..2644,
FT                 2634..3092)
FT                 /product="Gypsy-25_DBp-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MNIAENLKLEIKKEKXLVFDXNNAEVNNYGXARANCI
FT                 DLNSKSSNNIEFLVVDPNCEPLIGLKSLIELNLIKHLNIDLLCKLPTKKEE
FT                 FKRGVLEKFKLLFQGLGKLPNKQSIVLRSDSKPVLXYKKRFPQSXLGRLEK
FT                 ELNNMVQEKIISPVTYPXSWVNNLQVVEKSNGKLRLCLDPKPLNNAIKREH
FT                 YLIPTIEDFMAQLSRKKVFTVLDLSHGFWQMELDEASSDLTTFMTPFGRFK
FT                 FNRVPFGINSAPEMFQRNMVQIFGDLPNVIMYFDDIGILGESFEXHDETLL
FT                 KVLKRAELNGIRFNPDKVQYRKAEIEFMGHVLSGGTIKPQRKHLEAIEKIK
FT                 TPSDKATKLECYAFLDCISINTKRQSDKAGVLRILGLYKYLAKFIPDLSSR
FT                 TAKLRNLTRLDTPFEWTTEHQNELNDLLKTITSDPVLAVYDKTKPVVIQTD
FT                 ASKDGLGCVILQNGHPVSFASRTLTKTEQKWAQIEKELLAIVFAKGKVSFL
FT                 YLRSGICSTKNGTSIQXREDMLVADCLSRAQLPDEVEIQGLATVIHTVTRA
FT                 ACLSEENYNCYRRILANDENYQKIVEFVEKGWPSFRKLDKFCQEFYKHKSE
FT                 LHFEHGLLFRLCRLVIPFKLQKQILKQVHDPHLGIEKTLARARKLYYWPNM
FT                 NSQIKELIFACEVCEKFRRKNPKEPMVEDETPEYPFHMVGMDIFHYGGKDF
FT                 LSIFDAYSNFLIVSQLKGKSVSHIIEELRKNFNKCGYPSKLKCDNSPFNSF
FT                 MFRSXANECNAALQFSSPNYPQSNGLAEKGVAIAKXILKRCSQVNXYQYRX
FT                 LEYNVTPVASLDLAPCELFFGRMCKTKLPIKKTAXYRXIINEEIIPRKFIE
FT                 KKRNKKNTTTCTQEACVHLLKVIGFSLEKRKKKENEWVKGVVEKRVNERSY
FT                 IIXXDFNNHFRRNRRFMNKISGGNAGEDIDYFHDSISIXLSENKEXPITNS
FT                 NLXQPENDVRLSETENIINESIENELNCEGIENEDEXVDVIENTIVNEDGG
FT                 AVSNYKQLEAAVQRTRLKXEPRYKFRDLEDP"
XX
SQ   Sequence 3149 BP; 1152 A; 501 C; 610 G; 853 T; 33 other;
     taaggtwgat actggagcag acgtcaactg catcccaatg aatatagcag aaaatctaaa        60
     attagaaatt aagaaagaaa agttsctggt ttttgattwt aacaatgccg aagttaataa       120
     ctatggatkg gctagggcaa attgtattga tctaaattca aaaagtagca acaatatcga       180
     atttttagtt gttgatccaa actgtgaacc cttaataggt cttaagtcgt tgattgaatt       240
     aaatctgatt aaacatttaa atatagactt actctgtaaa ttaccgacta aaaaagagga       300
     gttttagaaa aatttaaact tttatttcaa gggcttggma aactgccaaa taagcaatca       360
     attgtcttga ggagtgattc aaagcctgtt ctgmattata aaaagaggtt tccccaaagc       420
     twactgggaa gattggaaaa agaactgaac aatatggtac aagaaaaaat tatatcccct       480
     gtgacatatc ctwccagttg ggtaaataac ctgcaagtag tagaaaaatc caatgggaaa       540
     ctaagacttt gtttagaccc caagccactg aataatgcaa ttaaacgaga acattactta       600
     ataccaacaa tagaagattt tatggcacag ctatcccgta agaaagtttt tactgttcta       660
     gacctttccc atgggttttg gcaaatggaa ttagacgaag ccagctctga cttaacaact       720
     tttatgactc cctttggtag attcaaattc aatcgagtcc cttttggaat taatagtgct       780
     cctgaaatgt ttcaacggaa catggtacaa atttttgggg atttaccgaa tgtcattatg       840
     tactttgatg acataggaat tttaggagaa agttttgaag amcatgatga aacacttttg       900
     aaagttttaa aacgcgcaga actaaatggw atacgtttca accccgacaa ggttcaatat       960
     aggaaagcgg aaattgagtt tatgggtcac gtcctctccg gaggaacaat taaaccacaa      1020
     agaaagcatt tggaagcaat tgaaaaaatt aaaacaccaa gcgacaaagc gacaaagctg      1080
     gagtgttacg cattcttgga ctgtataagt atttagctaa gtttatcccg gacttgtcct      1140
     caagaaccgc aaagcttagg aatcttacca gacttgacac tccttttgaa tggacmacag      1200
     aacatcaaaa cgaacttaat gatttactta aaactataac cagtgaccca gtgttggcag      1260
     tgtatgataa aactaagcct gttgttattc aaacggatgc ttcaaaagat ggtcttggat      1320
     gcgttatcct acagaacgga cacccagtta gttttgcctc gcgaactctt acaaaaactg      1380
     agcaaaaatg ggctcaaata gaaaaagagc tactagccat tgtttttgca aaaggaaagg      1440
     tttcattttt atatttacgg tcgggaattt gtagtacaaa gtgatcacaa gcctttggaa      1500
     gttcttctaa aacgggacat cgattcagka acgggaagat atgttagtag ctgactgtct      1560
     ttcacgagcg caactaccgg atgaagtaga aattcaaggc ttagccacag tgattcacac      1620
     agtgacccga gcagcatgct tatcggagga aaactacaat tgttatcgca gaattttggc      1680
     aaatgacgaa aattatcaga agattgttga gttcgtagaa aaaggatggc catcttttcg      1740
     taagttagat aagttttgtc aggagttcta taaacataaa tcagaattgc attttgaaca      1800
     tggtctccta tttcgcttat gcagattagt aatcccattt aaattgcaaa agcagatctt      1860
     aaaacaggta cacgaccctc acttaggcat agagaaaaca ttagctagag cacgtaaact      1920
     gtattattgg ccaaatatga attcccagat aaaagagctt atattcgctt gcgaagtttg      1980
     tgagaagttt cgtaggaaaa atccgaagga acccatggta gaagacgaaa caccagaata      2040
     cccttttcac atggtaggaa tggacatctt tcattacggt ggaaaggatt tcctttcgat      2100
     ttttgacgca tactctaatt ttttgattgt tagtcagctt aagggaaaat cggtttcaca      2160
     cattattgaa gaactcagaa agaattttaa taaatgtggt tacccatcwa aattaaagtg      2220
     tgacaacagc ccatttaatt cctttatgtt cagatctttw gccaatgagt gtaatgcagc      2280
     actccagttt tcaagcccta attatcctca gagcaatgga ttggcagaaa aaggagtggc      2340
     aatagcaaaa awtatcctaa aacgttgctc acaagtaaat kattatcaat ataggwtcct      2400
     tgaatacaac gttaccccag tagcaagttt agatctagca ccatgcgaat tattctttgg      2460
     aagaatgtgc aagaccaaat taccaataaa gaagactgcg wtatatagaa akataattaa      2520
     tgaagaaata atcccacgga agtttatcga aaaaaaaaga aacaaaaaaa atactacgac      2580
     atgcactcaa gaagcctgcg tccatttgtt aaaggtgata gggttcagtt tagaaaaaag      2640
     aaaatgagtg ggttaaagga gtagtcgaaa aaagagtaaa tgaaaggtct tatatcataa      2700
     gksatgattt taataaccac ttcagaagaa atagaagatt tatgaataaa ataagtggag      2760
     gaaacgccgg tgaagatatt gactattttc atgatagtat aagtataaas ttaagtgaaa      2820
     acaaagagaw tccwataact aatagtaatt taagwcaacc cgaaaacgat gttagattaa      2880
     gtgagacwga gaatattatt aacgaaagta ttgaaaatga attgaattgt gaaggaattg      2940
     aaaatgaaga cgaawtkgta gacgtaattg aaaacactat tgtcaatgag gacggaggtg      3000
     ctgtatctaa ttataaacag ctggaagctg cagttcagag gacgagacta aaatwggaac      3060
     ckagatacaa gtttcgcgat ctggaagatc cataaagcct cctcamagat acggatgaaa      3120
     tcgagttaag attaaaawaa maaaaaaaa                                        3149
//
ID   Gypsy-25_DEl-I repbase;    DNA;    INV; 7989 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DEl-I.
XX
NM   Gypsy-25_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7989
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 463-463 (2012).
XX
RN   [2]
RP   1-7989
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1347..2663
FT                 /product="Gypsy-25_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MEEMKEVLKRLDASMTILTAQMAEMKDEAKKVGNRIG
FT                 TLESDFGKRNPVAEIPLPLTHPRTEYELKESSVIPDCVKELVTFEGDPEKY
FT                 VSWLNRAQSIVDDYEIIRERPLYRSVLIQIRQKIRGNADSALNAYSVRDDD
FT                 WPEIKRILALRYADKRDFGTLEYELTQMTQGNQKLEDFYLRVNNHVSLIMN
FT                 RIKGMNYSVETTNALLAGQRDKALNAFIRGLRGDASRLLVVRKPGDVHEAY
FT                 SISLELEKMQSRNLPASVPTFRQIPNTNYQSYQNYRPPNSQRVPPTHQFSH
FT                 RVQTGSAYNYAQSGNSRGSPRFQGARSAIKHEPNQSGQTYRGSFNSRQGEA
FT                 GDIKRSPSANSNLNPFRKAQKLYHITSAPPTYLAPTEYHQESQDDLYYNRN
FT                 DNQDNTGKFEDSSQGIEPDSHMEELGPINKEGQNFMTDASQAYHT"
FT   CDS           2558..5806
FT                 /product="Gypsy-25_DEl-I_2p"
FT                 /translation="GLISGNRTRFSYGGIRTHQQRGSKFYDRCLSSVPYIE
FT                 YETRDGAKLQFLIDTGANNNFISPKNSAGSKTLLTPFSVQSAGGYNIKITH
FT                 CITGQFFKPMGNNTVLTFFVLPGLKSFDGIIGDDTLKALKALIDRKNDLLT
FT                 ITPNIKIPLLAKNSKNVHPLLDATHPELAREALNALIREYSRIFEPLSPGE
FT                 AVDTSIRAEIRTSTSDPIYTKSYPYPTNMRGEVDRQIEELLRDGIIKPSKS
FT                 PYNSPVWVVPKKPKPNGEKQYRMVIDFKRLNAITIADSYPIPDINSILASL
FT                 GKAKYFTTLDLTSGFHQIHMLESDTPKTAFSTLNGKYEFLRLPFGLKNAPA
FT                 VFQRMIDDVLREHIGKICYVYIDDIIVFSEDYDSHWKNLRAVFDNLKKARL
FT                 QVNLEKTNFLSTHVEFLGYVVTADGIRADEKKVEGVTKMKPPTNVKELKSF
FT                 LGMTSYYRKFIKDYAKVAKPLTNLTRGEFARVKSSQSKKVPIELDEQALKS
FT                 FNDLKTILASSEVLAFPNFSKPFHLTTDASNYAIGAVLSQVDSNKDRPIAY
FT                 ISRSLSKSEENYATNEKEMLAIVWALDNLRSYLYGAGSIKIYTDHQPLTFA
FT                 LGNRNFNAKLKRWKSRIEEYNCELIYKPGKSNIVADALSRVTTYVNHLGND
FT                 TASETDSIATIHSALEDASRLIPHVETPINAYRNQLIFYSDVSDYSCEYPH
FT                 PGYERHIIPIKDHNPSDLIDSLNKYLKPSIINGIKISDTYLQLLQTCCHQN
FT                 FKLYKIRITQRLVKDVTEEEEICEIIEKEHHRAHRSSREVRIQILEKYYFP
FT                 KMSSIIRTQISTCTTCKLHKYDRHPNKPALQPTPIPNYPCEILHIDVFTLE
FT                 KKIFLSCIDKFSKFAKLFPLQSKSAIHLRETLLDALHYFTAPRMIVSDNER
FT                 GLLCPTVLNYLRTLGIELYHTPTQKSEVNGQVERFHSTFMEIYRCLKDDHP
FT                 NFKNTELIPIVVDRYNNSVHSVTNKKPVDIFFNRTSRINYQGLSDFKQQTL
FT                 EDIRGLIEHKQSLTNNARNKKRTDPVSYEEGDTVYVANKQIKTKEKKRFKA
FT                 EEVQDDRRVTVKTRSGKIFHKSHLRS"
FT   CDS           6495..7952
FT                 /product="Gypsy-25_DEl-I_3p"
FT                 /translation="SPNYKNLLPFFFGTTSVSTLYVATALHIFKYDAPVVP
FT                 LQQGTVWRTNGVFKLAHIIDLGRIKQVIDQTTNEATIITDQRINALVFHYL
FT                 QHASEGISRMDGTPARRPRSIDWLGSAWKWVAGSPDRSDWNAILKTEDDIT
FT                 RNNNQQIRINTKLFDSTHESLQRLNDVIGRVNAIDGDFHVTTAVLHKAIII
FT                 ADQVSEILRACQLAKTDVVNTNLLDHEEIDEILTEVESLPYQNVVEAVEFS
FT                 RPTILTNGTTLLYILAMPKVVDQKYRLMLIYPTVSDGKQVVLKYNKLAMNK
FT                 VETYALLGNCVSIGNTTVCREKDLYKLEEDSCIPRLLKGGQAACDYLRTNQ
FT                 QTVELIDDGTIFLTNFNGTISTPTKEHHLEGSYVVQFDNETVTIGDRNFSS
FT                 YSSTHLMAMPAVLTQITTTGYELSLKYVHDFSVENLKKLSTMSNKILISFS
FT                 AEIIITVSIIIAIYLVWRKITSTKGIPRLRPPPANLEPTKA"
XX
SQ   Sequence 7989 BP; 2926 A; 1790 C; 1485 G; 1786 T; 2 other;
     ggcgcccgaa cagattccac tttctcgcga aagtgggacc caaatttttg cgggtacccc        60
     ccgacaaaaa atcaaagaga ataaaaatgt gttaagaaaa aaaggaaaag agaagaaggg       120
     taccccccag caagaaaaca taaaaaatta aaaagctacg ggtaccctgt gaataattat       180
     taaatataaa aaataaaaaa aaacccaaaa atgggaaaaa attaaaatga aatgaaaaac       240
     ccaaaaaagg gtataaagta tttaatacgg cgttgtgtgt gtgaagcgaa aaacccaaaa       300
     aagggtaaaa aattatttaa tacagcgttg tgtatgtgag agtgcgcaaa aatgtgtgta       360
     atacaactac ccgccgcggt gaggatgctg cctttcgcag ctggcattcc ccacgggcgc       420
     aaaaaaagtt gtaataaaat aataaaacag tgaacctgcc gcggcgatat gtccacgcac       480
     ctctcagtgt ggcgtattcg cgggcacaaa aaattctgta taaaataaaa gaagcaataa       540
     cccgctgcgg cgttaagtcc acttaagtgg gtagcttaat cgcgagcgca aaaattgcac       600
     tataaaaaaa agagagaaaa aggctttggc aacaaaaaat aattatttta gtttgagaaa       660
     ggagatagca ctggaaaata attgggaaca ctttttttcc aattcttttt tagtgttgtt       720
     tcgggtttca aactaggaaa aaagccgaag gtgataataa aattaaaata ataataaaac       780
     aaaaagtggt gtgtggcaat ctgctggaaa ggctcacgaa tgcggaatgc attcaaaaag       840
     ggctgcccag tggattgtgt ggcaaccgta ccttagtagg caaaacgcca gaacggacaa       900
     atacggacca tcgcgcccag tacccaataa ccgcactaag aaaaaactca cacaaagtat       960
     taacgcacaa cgccccaaga agaaaaatct tacaaaacca tacgaatttt tcaaaaaaca      1020
     aaatactaat aaaaaattta atttcagaac tctgtaagaa caccacaaga ctacaagaaa      1080
     acggccaaaa aacacacaca aatcaggaaa aaaaaccaca gaatctttgc gaagcaaaaa      1140
     agaaaccaac gggtgagtga aacgtttaaa taaaacaatt tcccctgaat aaataaaaaa      1200
     cataaaaaaa tmgtaaggag acaaactgtt acccgttagg cccatctgca tttttcactc      1260
     tattcttttt aaaaaaaaat aaaatacacg gcctgaccaa aggaaattct ttttaaaata      1320
     cttagcaaaa aatcaggaaa taaaaaatgg aggaaatgaa ggaagtatta aaacgccttg      1380
     atgcctccat gacaatcttg actgcccaaa tggcagagat gaaggacgag gctaagaaag      1440
     tagggaatag aataggtact ctcgagtccg atttcgggaa acgtaacccg gtggcggaaa      1500
     taccgctacc gctaacacac ccacgcactg aatacgagct taaggaatca tcagtcatac      1560
     cagattgtgt aaaagaatta gtaacatttg agggagaccc cgagaaatac gtctcttggc      1620
     tgaatagggc ccagtctatt gtggatgact acgaaatcat tagggaaagg cctttgtata      1680
     ggtctgttct cattcagatc aggcagaaaa tcaggggtaa cgccgactca gcgctcaacg      1740
     cgtacagcgt acgagatgac gactggccgg aaatcaaacg cattttagct ctacggtacg      1800
     cggataaacg agatttcggt acgttagaat acgaattaac gcaaatgacc cagggcaacc      1860
     aaaagttaga ggatttttac ttacgagtaa acaatcacgt ttcgctcatt atgaatcgca      1920
     taaagggtat gaattattcc gtagaaacca cgaatgccct ccttgcgggt caaagagaca      1980
     aggcattgaa cgcatttata agggggttga ggggcgacgc ttctaggttg ctagttgtac      2040
     gcaaacccgg ggacgttcat gaagcatact ccattagctt agagctggaa aaaatgcaat      2100
     caaggaacct cccagcaagc gtcccaacat tcaggcaaat tcccaacact aattaccaaa      2160
     gttatcagaa ttaccgacca ccaaattcac aaagagttcc cccaacccat caattcagcc      2220
     atagggtgca aactggctcc gcgtacaatt acgcccaaag tggaaacagc cgcggatcac      2280
     ccaggtttca gggggccaga tcggcaatta agcacgagcc taaccaatca ggccaaacct      2340
     ataggggcag cttcaactcg cgccagggag aggcaggtga catcaaacga agcccaagtg      2400
     ccaactccaa tttaaaccca ttccgtaagg cccaaaagct ttaccacatt acgtctgcac      2460
     caccaacgta cctcgccccg accgaatatc atcaggaatc acaagatgac ctctattaca      2520
     atcgtaatga caaccaagat aacacaggca aatttgagga ctcatctcag ggaatagaac      2580
     cagattctca tatggaggaa ttaggaccca tcaacaaaga gggtcaaaat tttatgaccg      2640
     atgcctctca agcgtaccat acatagaata cgagaccagg gatggggcga aattgcaatt      2700
     cctgatagac accggcgcta acaataattt tattagcccc aaaaactccg ccggttcaaa      2760
     aacactttta acgccttttt ctgtacaatc cgctggggga tataacataa aaatcacaca      2820
     ctgtatcaca ggacaatttt ttaagccaat ggggaacaac actgttctca ccttttttgt      2880
     actcccgggt ctgaaatctt tcgacggcat tataggggac gacacattga aagccctaaa      2940
     agccctgatc gacaggaaaa atgacctgtt gacaataaca cccaatatta agatacccct      3000
     cctggcaaaa aattcaaaaa atgtacaccc tttactagac gcaacgcatc ctgagcttgc      3060
     tagggaggcg ttaaatgctc tcattcgcga atattctagg atattcgagc cactctcgcc      3120
     cggagaggcc gtggacacga gcatcagggc tgagattcgc actagcacct cagaccctat      3180
     atacacaaaa agctatccct accctacaaa catgagaggg gaagtggata gacaaattga      3240
     agaactcttg cgggatggga tcattaaacc atcaaagagc ccatataact ccccggtttg      3300
     ggtagtaccg aaaaaaccta agccgaacgg agaaaaacaa taccgcatgg tcatcgactt      3360
     caagcgctta aatgccatca caatcgcaga ctcttatcca ataccagata ttaattccat      3420
     actagcaagc ctgggtaaag caaaatattt taccaccctc gacttgacat cgggattcca      3480
     ccaaatccac atgctggaat ctgatacccc gaaaaccgca ttttcaactt taaacggcaa      3540
     gtacgagttt cttcgtcttc cttttggact aaaaaacgcc cccgcggtat ttcagaggat      3600
     gatcgacgac gtactaaggg agcacattgg caagatatgc tacgtgtata tcgatgacat      3660
     aatagtcttc agtgaagact atgatagcca ctggaaaaac cttcgagctg tcttcgacaa      3720
     tctgaagaag gctagactcc aggtcaactt ggaaaaaact aattttctct cgacacacgt      3780
     tgaatttcta gggtatgtag tgaccgcaga tggcatcaga gcggacgaga aaaaggtaga      3840
     gggggtcaca aaaatgaaac cacccaccaa tgtaaaagaa ttgaaaagtt tcctgggtat      3900
     gacatcatat tataggaaat tcattaaaga ttacgcgaaa gttgcaaaac cacttaccaa      3960
     tctaactcga ggggagtttg cgagggttaa atcatctcag tcaaaaaaag ttcccattga      4020
     actagatgag caggctttaa aatcctttaa tgatttaaaa accattctag cgtcctcaga      4080
     agttctagcg ttccccaact tctcgaaacc ttttcaccta accacagacg catcaaacta      4140
     tgccattggg gcagtccttt cccaggtaga ctctaacaaa gatcggccaa ttgcttatat      4200
     ctcccgatca ttaagtaaat cagaagagaa ttacgccaca aacgaaaaag aaatgttggc      4260
     gatagtatgg gccttagaca accttcgatc atatttgtat ggtgctgggt ctattaagat      4320
     ttacaccgat caccaaccat taacatttgc tctgggcaat aggaatttta acgccaaatt      4380
     aaaacgttgg aagtcccgta ttgaagaata caattgcgaa ctaatttaca aaccagggaa      4440
     atccaatata gtagccgatg ccctttcacg cgtcacgacg tacgtaaatc acttgggtaa      4500
     tgacaccgcc tccgagacag attcaatcgc aacaattcat agcgctctag aagacgcttc      4560
     ccgtctaatt cctcatgttg aaaccccgat taatgcttat cgaaaccaat taatttttta      4620
     ttcagatgtg tccgattact catgcgagta cccgcacccc ggttatgagc gccacataat      4680
     ccctattaaa gaccacaacc catcagactt gatagattct cttaataaat atttaaagcc      4740
     ctcaataatc aatggaatta aaatttcgga cacttacctg cagcttcttc aaacttgctg      4800
     tcaccaaaat ttcaagctat acaagattcg tataacgcaa cgcttagtaa aagatgtgac      4860
     agaagaagaa gaaatttgtg agatcataga aaaagagcac catagagccc atagaagttc      4920
     gagggaagtc cgtattcaaa tcctggagaa atattatttt cccaagatgt ctagtatcat      4980
     tagaacacaa atttctactt gcactacttg taaattacac aagtacgata gacacccaaa      5040
     taaaccagca ctccaaccta cgcctatccc caattaccct tgcgaaattc ttcacataga      5100
     cgtttttaca ctagagaaaa aaattttttt aagctgcatt gataaatttt ccaaattcgc      5160
     caaacttttt ccactgcaat caaagtccgc aatccatctt cgcgaaaccc ttctggatgc      5220
     actacactat ttcacggcac ctagaatgat agtatccgat aatgaaagag gccttttatg      5280
     cccaactgtt ctgaattacc tgcgaacgct aggaatagaa ctttatcaca ccccaactca      5340
     aaaaagtgaa gtaaacggtc aggtagagag atttcactcc acttttatgg aaatttatcg      5400
     ttgcttgaag gacgatcatc ccaattttaa aaatacggaa cttattccga tcgtggtgga      5460
     caggtacaac aactctgtcc actcggtaac aaataaaaaa cccgtagaca tttttttcaa      5520
     ccgcacttcc aggataaatt accagggatt atccgacttc aaacaacaaa cccttgagga      5580
     tattcgaggc ctcatagaac ataaacaaag tttaaccaac aacgctcgta ataaaaaaag      5640
     gaccgacccg gtttcctacg aagagggtga cacagtatat gtcgccaata aacaaataaa      5700
     aactaaggaa aaaaagcggt tcaaggcaga agaggttcaa gacgatagaa gggtcactgt      5760
     taagacaagg tcgggaaaaa ttttccataa gtcccacttg agaagttaat ttatgggcaa      5820
     taaaaacact catttttcac gctcactaat agcacccccg ccgttagcaa tgggctggta      5880
     acaggatatc cctgaaattt tacaactttt aaatgtcact tcaataataa aagggaaaag      5940
     tgtatttaac gtttcacaag ctcaaaaata attacaaaat aaccacacca aaataccatc      6000
     aaatgctaac ataaaaaaaa aaaaaaaaaa caaaattaat ctaaacatat aaaataaagg      6060
     aaaccaaact aaaacacaaa caaatttaga catataaaaa taagagaaac acaataaaaa      6120
     cacaaaacca atctagaccc ataagaaaaa cacaggaaaa tttttttaca acactaacag      6180
     acttaacaca aaattcacaa caaaaacaaa cttaaacaca aaaaaactaa caaacctgaa      6240
     aacaaaaaac acaaaaaaac ctaacagaga aacacactga actaaaacaa tatcaaacct      6300
     gagcatataa actaaaataa actaaattaa aaaacaaata agagaaccta aattaaagta      6360
     atgaaattaa acaatatcga atataaaact ttcaaaataa tataaactta gcttaatacc      6420
     aaaaaattaa gaccaaaaat twagaaacaa cacaaacaac acctacacga aatatctaga      6480
     ctaagaacta ttaatcacct aactataaga atttattacc cttttttttc ggcactacaa      6540
     gcgtgtccac gctctacgta gcgaccgcac ttcatatttt caaatatgac gcaccagttg      6600
     tccccttaca acagggtacc gtctggcgaa ccaacggtgt ttttaagctg gcccatatta      6660
     tcgatctagg ccgcattaag caagtcatcg accaaacaac caacgaagct acgataatca      6720
     ccgaccaacg gatcaatgct ttggtcttcc actacctgca acacgcatca gagggcatct      6780
     cacgcatgga tggcacacca gcacggaggc cacgatcaat cgactggcta ggatcagcct      6840
     ggaaatgggt agcagggtca cctgataggt ctgactggaa cgcgatctta aaaacagaag      6900
     acgacataac caggaacaat aaccagcaga tccggataaa taccaaactc tttgactcga      6960
     cacacgaatc actccagaga ttaaacgacg tcatcggaag agtcaacgca atagacggcg      7020
     atttccatgt cacaaccgcc gtactccaca aggcaataat aatagcggac caagtcagtg      7080
     aaatactaag agcctgccaa ctggcaaaga ctgacgtggt caacacgaat ctattggacc      7140
     acgaggaaat agacgaaatt ttgacagagg tagaaagcct tccttatcag aacgtggtcg      7200
     aagccgttga attctcccga ccaacaatcc tcacgaatgg aactacatta ttgtatatct      7260
     tggcaatgcc caaggtggtg gaccaaaaat accgactgat gctaatttac ccaacggtat      7320
     ccgacggcaa acaggttgtg ctgaagtaca acaaactggc catgaataag gtggaaacat      7380
     acgcccttct tgggaattgc gtatccatcg gcaatacaac tgtctgccga gaaaaggacc      7440
     tatacaaact ggaggaggat agctgtattc caagacttct taaaggaggt caagctgcat      7500
     gcgactatct taggacaaac caacaaacgg tggaactcat cgatgacggc acaatcttcc      7560
     tgacgaactt caatggcaca atatccactc caacaaaaga acaccacctg gaaggctctt      7620
     acgtcgtaca atttgacaac gaaacggtca caatcggtga ccggaatttc agcagttatt      7680
     cgtcaacgca cttgatggca atgccagcgg tcttgactca aataacgaca acgggttacg      7740
     aactatcact gaaatacgtg catgacttca gcgtggagaa cctgaaaaaa ttatcaacta      7800
     tgtctaataa aattttaata tccttctccg cagaaataat tataacagta tccatcataa      7860
     tagcaatcta ccttgtttgg aggaagataa catcaaccaa agggatccca aggctgcgac      7920
     ccccacctgc gaacctcgaa ccgacaaagg cttaaggatc tgtgggacac agatcttgtg      7980
     gtggggagg                                                              7989
//
ID   Gypsy-25_DEl-LTR repbase;    DNA;    INV; 833 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.06, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DEl-I;
KW   Gypsy-25_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-833
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3095-3095 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. AG-CT termini.
XX
SQ   Sequence 833 BP; 242 A; 259 C; 207 G; 124 T; 1 other;
     agttaacacc ggctagcgcc cccttccctt caccccctct cgacatccac gatacccgac        60
     gacgaccctt ctcattcaac ccctcggcca cccacatcgt acacattcaa ttcgagtggc       120
     cacacagcga caacattacg ctcaagtggt cacatgaaga cgacaccaac tcaagtggct       180
     gcaatgaccc ggccgctggg ccagcaakag cgacagcggc agcaccagca atagcgacag       240
     cagcagcacc agcaatagcg acggcggcag cagcagctaa acagcggcag agatgcaaca       300
     gcagcgatgc agcggcagcg acgcgacgat ggagacagaa cgacagcggc agcgcgagaa       360
     cgacagcggc agcgccagaa cgtcagcggc agaagagcaa cggcagcaac aagcaagcga       420
     aagactgttg accgcccgct agctgcctca gctcaacagc cgccgcccct accactgcgc       480
     tagataaaat gcagcgctca catccggagc gcaacaagcg gaccaaccaa aaccgctgcc       540
     gtcggctacg gtacttccgc gtctgccaac ggcatgctga cgccggagga ccggagttgg       600
     ttaagaggcc aacccactag tatttaagag ctcacttctg taaccaccgt agtaccgtgc       660
     ggactgaata ttagattata aaaataaact tataacgtaa tccgaaagta aagttgttgc       720
     cttccttaag taccaaagag aacgagtgag caagtgagat gcagctgata aacaacacga       780
     taaggtagta taggggagct tcgtaccccc cccggccatg tctggcctta act              833
//
ID   Gypsy-25_DMel-I repbase;    DNA;    INV; 2191 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2191
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (16-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A conceptually constructed, corrupted partial sequence.
CC   3'-portion is incomplete.
XX
SQ   Sequence 2191 BP; 680 A; 387 C; 469 G; 606 T; 49 other;
     tcagaagtgg gatcggcctw ctcccaagac ctctcgagtg atcagcatta ttagaatcgm        60
     aaagcaaaaa tttcatggag ttgattaaat ctatgcagac ttccaaatgg ggacgcaacc       120
     cagcaaagtg acgctaccga agtttacccc agacactgca aatgcagctg cgtggsgcaa       180
     aactgtcgac ataattatkk cagaaaatgt gttgaaakka agckctttgg twwtgkcact       240
     aagcaactca ttagaaggag gagcgtccsw gtggttatcc cagatttgct acmgtggaat       300
     tawktagaat ttmgagaatt gtttacacaa cgatatgata gkgtcaacka atatccagac       360
     acgaagcgaa ttggaaaaac aactgcgtgc ctttgctttt ggtaaacgca atgaccaaaa       420
     ktcascagac tgtgctagtg ctccwgagcg taagawgcag aaattatcwt cgcgcatgaa       480
     cctggccatg agttcgsaga gtgccgaacc agawtggctg gagaaggaag aaaccctama       540
     cacagcaact ctacwccaag kagggacatg tcaacmawaa agtgstacaa gtgtggmcag       600
     ctggggcata ttgcaacaag gtgcacaama wcgtcaagcc aggctgagaa gcgagtgaga       660
     tatgtgtgcc gttgtcgatc caagagggaa tttgtaccaa atgggtgagc ccgttccata       720
     cttttttgat tccggagctg agtgttcctt attgaaagaa aaattagcag ataagttcat       780
     gggaaaaaga attcataata ctgtaattat aaatggtata ggtgaaggct ccgtgacatg       840
     cacaatgcaa attctagcta ccgtaaagat ttgtaatttt tccctagaaa tcctgttcca       900
     tgtagtcatg gacaaatatt tgaagtacga tgtgttgatt ggccgtgaga ttttaggtca       960
     aggctttggc ktwactatta gtgccaacga atttttttgt ataaagttaa tactgtcaat      1020
     acactgtcta gcattactaa tacgagttat atggattcta taaatagtga cttgastgag      1080
     tccgacaaag ctgaacttgc agaagtatta aaatcctatg caccgaaatt tataaatggt      1140
     ataccaagta gccgagttac cacgggtgaa ttagatatcc gtmtaattga tgccagtaaa      1200
     accgtaatga ggcgcccgta tagactgagt aacgatgaaa agttgttggt gagaagtaaa      1260
     attcaggaac tttakcctca aacgttatwc gtccaagctg ctccccattt gcamgtmcaa      1320
     tgctgttagt gaagaaagag gatggtagtg gtcgtttgtg catagwctgt gcaaatacam      1380
     tttccgataa gtatcctttg cccttgatat cagatcaaat tgatagacta tstggaagca      1440
     agwatttttc tagcctcgat atggcgagcg gcttctatca gataccwata aagtcagaat      1500
     cgatagaacg cacagccttw gtcacaacag aaggacaata tgaatttgta gcaatgccct      1560
     ttggcttgaa taatgcttca tctgtgtttc agcgatccat aataaaagca ttaggtgagg      1620
     tagcatactg atatgctgtt gtttacatag atgatgtttt agtcgtagct ggcacaaagg      1680
     aggaggcctt tgttagactg agggacgtgt tgaacaggtt atctagtgcg gtattttcgt      1740
     ttaacatgaa caagtgctca ttcctaaaga cgagtgttga atatcttggt tataaaattg      1800
     agaacggtga aataaggcca aatccacaca agattcaagc tgagacagtt tattagcctg      1860
     tcttcatatt ttcgacagtt tgttccccgc ttttctgagc taatgaaacc attatactta      1920
     cttacatcaa agaatacgtg atagttcact aaatatgttc atttgcatca cgcattaagc      1980
     catgacactg atagctgcat tgaggcatta aaatcaacct tatgcatttt tggtgtccta      2040
     agtcgtttaa tagctgataa gggtcgtaaa tagttttact agtaatgatt ttaaacagtt      2100
     ctattcactt taaaagatta atttacattt gattgccaat tgtcacaaaa atgagccatg      2160
     tagaactatt gattggtaag aaagctagac c                                     2191
//
ID   Gypsy-25_DMel-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-380
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 727-727 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 380 BP; 113 A; 52 C; 110 G; 104 T; 1 other;
     tgtcggagat tgagtagatc taacgtatta tttgaattat tatttgaatg taaccgaaat        60
     twtgttattg atccgttatg ttaagaatga gcagcgagta atgaaattca cggaaagcgt       120
     tccgttattg agtgggcatc atttgtgtgt gtattcaaat gagcatggcg cctgttgttg       180
     ttgtggtaga gtttcgtgga aacgaagtaa ggatgaagca attgagtgaa gttgaggaat       240
     agaagaaaag catcgagagg gcgacgcttg agtaaattag tctggtgaga acggcagaag       300
     gaacaacacg caggcgactt gctgtgctgg acaatatgga cgctgaagtg aatgaaaagt       360
     cgcgctcggc ttctccgaca                                                   380
//
ID   Gypsy-25_DMo-I repbase;    DNA;    INV; 4882 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DMo-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-4882
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2963-2963 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1120..2004
FT                 /product="Gypsy-25_DMo-I_1p"
FT                 /translation="MERSEILGLVVGQLRSKLEELQLSTAGRKVELQNRLL
FT                 EHYGLGIEEEDSDDEAVNIVPLSRNIEQSRSWFTLKDVEDSVNKFDGSSSM
FT                 DVEQWVSEVEECAVTVQWSELQLFVYAKQLLDGAAKLFIRSQRGINNWEKL
FT                 KTALISEFEVKVTSAEIHRRLRKRQVKKGETLQEYLYALMEIAKNIDLDEE
FT                 SLIEYFVEGIPDSRINKTLLYQARSIKQLKVQIESYQKFCNSTPNTFIARN
FT                 KAVKRDFPDKKAVKCFKCGADSHTLKDCLKKEFCCFKCGKPGHRAAQCKGE
FT                 ISK"
FT   CDS           join(2012..2344,2299..3963,3891..4880)
FT                 /product="Gypsy-25_DMo-I_2p"
FT                 /translation="MKSANLVNESNSIETMSSTFTPSGLELKNIVCGAVIW
FT                 QGLVDTGADLCLMQKRVYQKLRIRKLSGPGKSLNGIGDGQILTFGSCVVEE
FT                 FXNMCMLSLDQDXGAVDLNRDKKFGSGXWGSRPKSRQEVRRIVDSYHPIKX
FT                 PSXXIEMKILLTDDLPVYQHPRRMAXCDQEIVDKQIKEXLAEEIIKPSASE
FT                 YASPIVLVXKKNGKKRLCCDYRKLNEKVIXDXXPMPNMEWVIXKLQEASVF
FT                 TTLDLINGFHVPVEPGSQKYXSFATQKGQYEXLYVPFGISNSXAAFTRFIM
FT                 SXMSELIXNNEAVVYMDDVKKVLSXAEKSGLRINWSKCXLLQERVDLLGYI
FT                 IQKGTISPSKEKTQAVSNFPVPQNRKAIQRFLGLTSYFRKFVEGYALIAKP
FT                 LTDLLRKDVAFKFKELEHVAFEQLKAALSNGPVLKLYNPKFETEIHTDASK
FT                 YGYGGVLLQRDPEDCLFHPVQYMSRKTSEAEEKYDSYELEVLAVMCALRKW
FT                 RVYVLGIKFKIVTDCNAFTMTMKKKDVPLRVARWAMYLQDFDYKIEHRSGT
FT                 KMRHVDALSRVSCYMLSDSLLHRLKEAQLRDEWTKIIRSIVEERXYEDFYI
FT                 ENGILFKDPNRRLIVVPAQMEVEIITDRHKQGHFSAAKTQDLVERDYFIPK
FT                 SKXKIVSVVGNCIECIIKRLFHSEIKRXDSQRCWKLHRVHNMNTKSGKREG
FT                 FLYSIDKGDRPLCTYHIDHVGPMESTNKRYNHILVVVDAFSKFVWLYPTRS
FT                 TGVEEVISCLERQASVFGNPERIVSDRGTAYTSHIFKDYCQXQXIAHXQIA
FT                 TGVPRGNGQVERMHKIVVPMLSKLSHDCPGGWYKHLXRVQQVINNTAPRST
FT                 KVSPFRILTGLEMRLPDDLELKKLIDXSLIDELNXERSEVRERARENIREL
FT                 QEENKRTYNLRRKAETQYDINDLVAIRRTQYGTGLKLKGKYLGPYKILEKK
FT                 DHGRYEVEKVGIGEGPRRTTTVAEYMKMWDSFGSKDLSGGP"
XX
SQ   Sequence 4882 BP; 1630 A; 749 C; 1238 G; 1221 T; 44 other;
     aattgggggc tcgtccggga ttggtccaag ttacacttta aaacacgaaa gacaaagctg        60
     ctgaaaagtg agaaatgaac aattattgcg aaggtgcgag cgagacaaaa agagacgctc       120
     agtgacgatt gcaaattctg gtgaaattca cttttctggg aaagcgacgc gcgcaagcag       180
     aaaggwaaaa gacaaagaca aaagtgcgag cagagacgtc gaagaagtcg gtggatgaaa       240
     attttgctga tacgcaggcg gatgagctgg tgcgtaaaga gacgaagtta atcgagaacg       300
     taagctaggt ggctatgcgt camggttaat ttatcaaagt tgctagtgag attcgtcgtg       360
     ggacgcagtt gatcaagagc gmaagtcagg tggctgtgcg ctaagatcaa cacagaagkt       420
     ggaactgaga ttcatcgttg gaatcacagg cggactatca ggtggataga aaaactggat       480
     gcagttgttc aagagcgcaa gtcaggtggc tgtgcgctaa gatcaacaca gaaggtggaa       540
     ctgagattca tcgttggaat cacaggcgga ctatcaggtg gatagaaaaa ctggatgcag       600
     ttgatcaaga gcgcaagtca ggtggctgtg cgctaagatc aacacagaag gtggaactga       660
     gattcatcgt tggaatcaca ggcggactat caggtggata gaaaaactgg atgcagttgt       720
     tcaagagcgc aagtcaggtg gctgtgcgct agacgaagtg cgtcgaggga atcgtactca       780
     gggtcataga agctggatga gctgtgatcg agcagtgaga gaagaagaag aattggtgca       840
     taacgaaatt ttaagtggtt gcatgacaaa aagtttgtat gtatcataaa ttgtgtagca       900
     taagtagaag ctctaaggcc atagcaacga gtaattgtaa gcgagaaaag ttagaagcgt       960
     cacttaacat aacakaatcg attattattc tagcgtcacc taacataaca taatcgatta      1020
     tatgcaaatt cacagctgat tgggctgctg aacaatttaa ataacgaaaa gctagaagtc      1080
     gaaatttata gtttaagtaa actgataaat agcggcaaaa tggaacgaag cgagatttta      1140
     gggcttgttg ttggccaatt gagaagtaaa ttagaagaat tgcaattgag cacggctgga      1200
     cgcaaagtag aattgcagaa caggctatta gaacattatg gtctgggaat agaggaagag      1260
     gactcagatg acgaagcagt aaatatagtt ccgttgtcgc gtaatattga gcaaagcaga      1320
     tcgtggttta cacttaaaga tgtcgaagat agtgtaaata agtttgatgg ctcaagctca      1380
     atggatgtag aacagtgggt ctctgaagtc gaagaatgtg cagttacagt tcagtggtca      1440
     gaattacagt tgttcgtgta tgcaaagcaa ttacttgatg gtgctgctaa gttgtttatc      1500
     cgcagtcaga ggggtataaa taactgggaa aaattgaaaa cagccttgat cagtgaattt      1560
     gaagtaaaag tcacatcggc agaaatccac agaaggttga gaaagagaca ggtgaagaaa      1620
     ggtgagacac ttcaagaata tttgtatgcc ttgatggaaa tagcaaagaa tattgattta      1680
     gatgaggaga gtttgatcga gtattttgtt gaagggatac cagattctcg gataaataag      1740
     acacttttgt accaagctcg atcaattaaa cagttgaaag tacagataga gagttatcag      1800
     aagttctgta attcaacgcc taatacgttc atagcaagaa ataaggcagt caaaagagat      1860
     tttccagata aaaaagctgt aaaatgtttt aaatgcggag ctgactcgca taccctgaaa      1920
     gattgtctta agaaagagtt ctgctgcttt aaatgcggta agccaggaca ccgtgcagca      1980
     caatgcaaag gtgaaattag taaatgaacc aatgaaatca gcaaatctcg ttaatgaaag      2040
     caattcaatc gaaacgatgt cgagtacatt cacgccttct ggattagaac tgaagaatat      2100
     agtttgtggt gcagtgattt ggcaaggctt agtcgatact ggagctgatc tgtgccttat      2160
     gcaaaagcgc gtatatcaga agttaagaat aagaaaattg tctggccctg gtaaatcttt      2220
     gaatggtata ggtgatggtc agattttgac atttggaagc tgcgtagtag aagagtttwa      2280
     aaacatgtgt atgcttagtt tggatcagga tgktggggca gtagacctaa atcgcgacaa      2340
     gaagtgagac gaatagtaga ttcttatcat ccgataaaaa akccaagcts ccsgattgag      2400
     atgaaaattt tgttaaccga cgatttgccg gtgtatcaac atccgagacg aatggcsgas      2460
     tgcgatcagg agatcgtmga taaacaaata aaggagkggc tagcggagga aattattaag      2520
     cckagtgctt cagaatatgc ttctccaatt gtgctagttk ccaagaaaaa tggtaaaaag      2580
     cgcctwtgct gcgattaccg gaaactgaac gagaaagtga tcmgwgatwa twttccaatg      2640
     ccgaatatgg aatgggtgat asataagttg caagaagcgt cggtattcac tacmttagac      2700
     ctgattaatg gattccatgt tccagttgag ccaggttcgc agaaatacam ttcgtttgcw      2760
     actcagaagg ggcagtacga attkctatat gtaccttttg gaatttcgaa ttcccmagca      2820
     gcctttacwa gattcataat gtcasttatg agcgaactaa tcmagaataa tgaggccgtc      2880
     gtttacatgg atgacgtcaa gaaggtactg agckttgcag agaaaagcgg tttacgtata      2940
     aactggtcga agtgtsagct gttgcaagaa agagtagatc ttttaggata tattatacaa      3000
     aagggtacaa taagtccaag taaggagaag actcaagctg tatcgaattt tccagtgcca      3060
     caaaatagga aggctattca gcgattttta gggctcactt cttattttcg aaaatttgtc      3120
     gaaggatatg cattaatagc aaagccgcta actgatctat tgcgaaagga tgtagcgttt      3180
     aaatttaaag agttagagca tgtcgcattt gagcaattaa aagcagcgtt gtcaaatggg      3240
     ccagtgttga aactgtataa tccgaagttt gaaactgaga ttcatacaga tgcaagcaag      3300
     tatggatatg ggggggtatt attacaaaga gaccccgaag attgtttgtt tcatcccgtt      3360
     cagtacatga gccggaagac tagtgaagct gaagaaaagt atgactctta tgaactagaa      3420
     gttttagccg tcatgtgtgc tttgaggaag tggcgtgtgt atgtgctagg catcaagttc      3480
     aaaattgtaa cagattgcaa tgcattcaca atgacmatga aaaagaaaga tgttcctttg      3540
     cgggtagcca ggtgggcaat gtacttacaa gattttgatt ataaaattga gcatcgttcc      3600
     ggaacaaaaa tgcgtcacgt tgatgcgttg agtcgtgtat catgttacat gttaagtgat      3660
     agtttattgc atcgtttaaa agaagcacaa ctgagagatg agtggactaa gattataaga      3720
     agcattgtgg aagagmgaag ktatgaagac ttttatatag agaatggaat attgtttaaa      3780
     gatccaaacc gtagactaat tgttgttccg gcacagatgg aagtcgagat cattacagat      3840
     cgccataagc agggacattt ttcagccgca aagactcagg atctagttga aagagactat      3900
     ttcattccga aatcaaaaga kaagatagtc agcgttgttg gaaactgcat agagtgcata      3960
     atatgaatac caagagtgga aagagagagg ggtttttgta ctcgattgat aaaggtgata      4020
     gaccgttatg tacttatcat attgatcacg tggggccaat ggagtcgact aacaaacgtt      4080
     ataaccacat tctggtcgtg gtagatgctt tttcaaagtt tgtatggcta tacccaactc      4140
     gtagtacagg tgttgaggaa gttatttcat gtttagaaag gcaagcttct gtgtttggaa      4200
     accctgagcg aatagtatca gatagaggaa cggcgtatac ctcgcacatc tttaaagatt      4260
     attgtcaaaa scaaagmatt gcgcacwtgc aaatagctac cggtgtacct cgcgggaatg      4320
     gtcaggtaga aagaatgcat aagatagtcg taccaatgct ttccaagtta agtcacgatt      4380
     gccctggagg ctggtacaag catctcgsga gggtccagca agtaattaat aacacggcac      4440
     caagaagtac taaagtgtct ccttttagaa tcctaacagg cctggaaatg cgtttgcctg      4500
     acgatctcga gttgaagaaa ttaattgats aaagcttgat cgatgagtta aatgwtgagc      4560
     gatctgaagt gcgggaacga gcccgagaaa atatacggga gttacaggaa gaaaacaaaa      4620
     gaacttacaa tctgaggagg aaggcagaaa ctcagtacga tatcaatgat ttggtagcta      4680
     twagacgcac ccaatatggc acmggtttaa aactgaaagg gaaatattta ggaccgtata      4740
     aaatactaga aaagaaagat catggcagat atgaggtgga aaaggtagga atcggagaag      4800
     gaccacgtag aacgacaaca gtagcggagt atatgaaaat gtgggactcc ttcgggtcga      4860
     aggacttgtc aggagggccg aa                                               4882
//
ID   Gypsy-25_DMo-LTR repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis, long terminal
DE   repeat portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_DMo-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-432
RA   Bao W.;
RT   "LTR retrotransposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2952-2952 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 432 BP; 175 A; 64 C; 82 G; 111 T; 0 other;
     tgtgggattc gtaaaagttg caacacccct ggcagatgaa ccgcagggaa tcggagtaaa        60
     cgttagcttt tgaactagat cacgaatcgt tcttagaaga agaagagtcg ttatgcagtc       120
     gtcgaccagc agagtcgtga ggcagccgtc aagcagctaa gacgtacaac agaatcaagt       180
     gtcgctaagt aaaaatgccg aataagataa agaagaacag aagtgaaata gagatcacaa       240
     gaagtgaaaa gatcatgaac acgtacaatt aattaaataa cctaagtgta actaaaatta       300
     atctctataa taaaatacaa tataatataa tataattttg tagacatttg ttgtaaaact       360
     cgttatagtt taaagttaaa aggaaatcgt taaattgact tttaatttac tcaataaatg       420
     taaaatccta ca                                                           432
//
ID   Gypsy-25_DP-I repbase;    DNA;    INV; 5558 BP.
XX
AC   super_85;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DP_;
KW   Gypsy-25_DP-LTR; Gypsy-25_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5558
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1535-1535 (2012).
XX
DR   Genome; super_85; Positions  207419  212976.
XX
CC   Positions [4667-5143] - Integrase core
CC   'GCGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3374..4492,4496..5491)
FT                 /product="Gypsy-25_DP-I_2p"
FT                 /translation="MPFGLTNAAQTMCRLMDMIIPPHFKNRVFVYLDDLLL
FT                 VSETFEDHLGLLTEMSTVLRNAGLTLNLDKCRWCVPEVRYLGYVIGKGCIK
FT                 VDTEKVSAIRNLLPPRSVKELRKFLGCAGWYRRFIENYASLTAPLTDLTKK
FT                 VKSFQWTEDAQQAFEEVKHRLTSAPLLVTPNFEKPFIIQCDASNIGVGGVL
FT                 AQLDEDGIERPIAYFSYKLNQVQQKYCVTELECLAAVLSIEKFREYVEGLE
FT                 FKVITDHASLKWLMRQTDLNGRLARWALKLQHFNFEIEHRKGSLNIVPDAL
FT                 SRLPTEEISEIEVVLPEVDLQSPHFWSNSYTKLKDTITENQSRLPDLKIVY
FT                 NYVTFTGELSFTKETQCQSRTAGNFGYHQNHSLYCIMHTRLLIVLIVASAW
FT                 WPNMIKDVKEFIARCEVCKQVKAPNITLKPPMGNPVVSERPFQRLYMDFIG
FT                 PYPRSKQGNIGVFVVLDHLTKFHFLKPLKKFTADLIIEFLKTNIFHVFGIP
FT                 EVIVTDNGSQFKSNIFQAFMQKYGIKHMFTAIYSPQANASERLNRSIISGI
FT                 RAYLGKDQRLWDDKLGEISFALRSSHHAAIGFSPYFALFGNHMITHADNYE
FT                 LLRRIEMLKEGENILTTDKLQIVRNKIMENISKAYQTNKRTYDLRTRYEHV
FT                 FRRNFAQSNKIKAFNAKLAPKFLKATVVRKFGNHCYELEENGQQIGKFHAK
FT                 DLQSA"
XX
SQ   Sequence 5558 BP; 1855 A; 984 C; 1159 G; 1560 T; 0 other;
     acaacaaccg taacaaaaca ttgtgtatca gttattgtca gcatatagaa tttttgcttt        60
     tgtttccttt ctggaaaact gcaatggttg gtgcaagtca cagtccattc tgtccgaaac       120
     gatgagggag catcgggtct atatgcgtgc caggagctaa gtggaagaaa attgtattaa       180
     tgtctgtgga aatctttaag atttagaatg ctagtcatta aatcttgctg cccggaacaa       240
     ttggtatatt tttttttttg aagcttcagc tcgtgttgaa gacaataatt tttttttaat       300
     agtatatttt gggaacaaat catggtgtga tatgtattgc cataatcttt gtatgttcca       360
     aatctcaata cccttgatcc gtatagttta tttttggagt gaatttgaca ttttcgagca       420
     tttattcggt aaaattctta aagattgatt tgtgtgtgca ccatggccgt aagacgaagt       480
     ttagatatga ccacatccac aaataatgaa caggtttgca gagtctgttc acacccaatg       540
     atttcattgg atttaaaact cataacacga tgtaaacata ttttccatgg aacatgcatt       600
     ttgaattggc ttgataagtc gcgatcttgc ccaacatgtc aaaacaatgt tacaagaaac       660
     agtttattag aggttctttc cgaaaatgtt gccgaccaca atctgaacct ggaaacaaat       720
     agtttggaga ggattctgtt aactaatagt caaaagaaga aaaagagaca gtcgcagcaa       780
     tcaaatgaga tagtagatct cgagtataac agtaacgtat tgtctaattt tgcttctgcg       840
     gataacccaa accaagatgt aggtttctta gagcagagaa tattatcaca ggtagatcat       900
     cgaataactt cgcaaattag tcaaatgcag tccatgatct cggaactgtc tcgtcaaatt       960
     tctaagttaa caacagacag ggcaggaaga acggatgcaa tacctaactt ccataccaat      1020
     gcagatgata atggaaataa caatgaacct gattggggaa gaagaactac tagagcttcg      1080
     tcacttaatc tagaaagaga cgtacccacc ttcataccca atgaatatag aaatagtaac      1140
     aatctaccgg agagaaatgg tagtttcaat ctaagtcgcg atgtgggaaa agtagcaaat      1200
     ttgattagta gctggaaagt gcagtataat ggctcacgca atggtatgcc ggtagggaag      1260
     ttcatataca tgattacagc tttgacaaat gatagcttac tatacctgaa gttatagtaa      1320
     ctgataacgg aagccagttc aagtcgaata tatttcaggc attcatgcag aagtatggga      1380
     taaagcatat gtttactgca atttacagtc cacaggctaa tgcctcagag cgccttaata      1440
     gatcaattat atctggtatg ccggtaggga agttcatata catgattaca gcttagacaa      1500
     atgatagctt acgaggaaac tttgaagtgt tgtgcgaaca cattcatatt ctctttagtg      1560
     gccgagcaag tgaatggttc tggagtgtat ctccagactg cactgcactg cagacagagt      1620
     aatctggtcc gatctttgta agtcgctgaa ttcctatttt cttgaaccgc tatctgacga      1680
     tgacgtgaga gaattgataa gagatcgcaa gcagcaaatc agcgaaagtt ttgatgaatt      1740
     tcataacgga gttatgcatt tagtagatcg actacaatac cctattagcg agagtcatct      1800
     aacgtcaatt ctgaaacgaa atctgagagc gtttatgaga aaggagttgt tctatataga      1860
     agtcaattcg gttagccagt tgagaaaatt agtccttaga cgagaagctt ttagtgagga      1920
     gtataacacc gctaacctga aagcaaacac acgaaagcaa attaatgcat tggaatatga      1980
     ccaagaacgt tcagataacc atctaggaga gcaagaaatt tgcgaactaa aaagaactag      2040
     agccttagaa gagattcaat gctggaattg tcgcaggttt ggccataaac acgcagattg      2100
     ccaatctgat aagaagatat tttgtttagg ttgcggagct gaaaatataa taagaccaaa      2160
     ttgtgaaacc tgtcaggaaa accgacggct gagcggcaac aagaacagca gttaccgctc      2220
     aaatcctcaa cattaaataa agagcattct tcttcttact gtccgaaagt caatataatt      2280
     cctaaatatt taaattctaa aaatattcaa ggtaaattat atccaatagt cccgtatcat      2340
     ataaggcttc gaaactatga agaaataaga aaaaaaatat ttggtagcga tttaattaaa      2400
     aaacccagtt gtgtccgaac taagagaaat accgttcgtt ttcgtaactt tataagaaaa      2460
     gttaaagata gaatgagggg tatatcgctg agtctagatt cgattgtgga tataaaaaag      2520
     gatattagac catttgtgga aatagatata tttggtaaga cttatggagg attattagat      2580
     tctggtgcat cagtttcatg ccttagtggg gaagctgcaa aggaatttat aagcaagaat      2640
     aggccctata ttgcaagcac gtcgcaagtt gaaacagctg gaggacaaaa atacaacatt      2700
     cttggttacg ttgaaactga agtaagcttt aggaatcaaa ctcgattgtt aaccttatat      2760
     ataattcctg atttgaaaca aaacctttat ctgggaatga atttttggaa tacttttggc      2820
     ctgatggaga aactagcgaa aactttatca gtaaatgaga ttgaattgcc agaatcgtta      2880
     aatgccgagc aacaacaacg catggaaaag gttgtggctt tgttcccaga ttttaatacg      2940
     gaaggcttgg ggaaaacgtc catgttagaa cattcaatcg aattactgcc atcggcaaaa      3000
     ccaataaaac agagatattt ttcagtatcc ccggctgtgg aaaaacggat tcatgcggaa      3060
     atcgatgata tgcttagttt aggagtcata gatgtagcac gcctgcttgt tcgtggagta      3120
     ctcccgtttc attagtacaa aaaggatagc agatgtcgta tgtgtctaga ttcacgcaag      3180
     gtcaacttca gtgacgataa aggatgctta tccacaaccc aagataaatg gtattttatc      3240
     gagattaccg aaagcagaat ttatttcatc tttagatctg aagcacgcct tttggcaaat      3300
     aaatctgaaa gaatcttgta gagatctaac agccttcact gttccaaatc gtccttttta      3360
     tagattcaga gtcatgcctt ttggacttac gaacgctgca caaacaatgt gtcgattaat      3420
     ggacatgatt attccacccc atttcaagaa tagagtcttt gtctatcttg atgatttgtt      3480
     gttagttagt gaaacatttg aggatcacct tggactgttg acagaaatgt ccactgtgtt      3540
     gagaaatgca ggcctgacgt tgaacttaga caaatgtcgc tggtgtgttc ctgaagttcg      3600
     ttatcttggt tatgtgatag gtaaaggttg cattaaggta gatacagaaa aggtctccgc      3660
     catcagaaat ttgctcccac ctcgttcggt gaaagaactc agaaagtttc tgggatgtgc      3720
     gggttggtat cgccgattta tagaaaatta tgcatccctg acagcaccac tcacagacct      3780
     gaccaagaag gttaagtctt ttcaatggac tgaggatgca caacaagcct ttgaagaggt      3840
     aaaacatcga ttaacctcag caccgttatt agtcacaccc aattttgaga aaccgtttat      3900
     aattcaatgc gatgcatcca atatcggtgt cggtggagtc ctggcccagt tggacgaaga      3960
     tggcatagaa cggccaattg catatttttc ttataagcta aatcaagtcc aacaaaaata      4020
     ctgtgtaacc gaattggagt gtttagctgc agtattgagc atagagaaat ttagggagta      4080
     tgtagagggt ctggagttca aagtcataac ggaccacgct agtttaaaat ggcttatgag      4140
     gcagacagac ttgaatggca gactagctag atgggcacta aaactgcagc attttaattt      4200
     tgaaatagaa cacagaaaag gaagcttgaa catagtccca gacgcccttt ctcgactacc      4260
     gactgaagag ataagcgaaa tagaagtggt gttgcctgaa gtcgacctac aatcgcctca      4320
     cttctggtcc aatagctata ccaagttaaa agatacaatt acagagaatc aaagccgttt      4380
     gccagacttg aaaattgtct acaattacgt tacatttaca ggcgaactca gttttaccaa      4440
     ggagactcag tgtcagagtc gaactgctgg aaactttggg taccatcaga attgacacag      4500
     tctgtattgt ataatgcaca cgcgcctcct catagttctc atagtggcat cggcatggtg      4560
     gccaaatatg ataaaagacg tcaaagaatt tattgcgaga tgtgaagttt gcaaacaagt      4620
     gaaagcccca aacataactc tcaagcctcc aatgggaaat cctgtagtct ctgagcgacc      4680
     attccaacgg ctctatatgg atttcatagg accttaccct cgatcaaagc agggaaatat      4740
     aggagtattt gttgttttgg accacctaac aaagtttcat tttttgaagc cgttgaagaa      4800
     attcactgca gaccttatta tagaattctt aaaaacaaat atattccatg tattcggtat      4860
     acctgaagtt atagtaactg ataacggaag ccagttcaag tcgaatatat ttcaggcatt      4920
     catgcagaag tatgggataa agcatatgtt tactgcaatt tacagtccac aggctaatgc      4980
     ctcagagcgc cttaatagat caattatatc tggtatcagg gcttatctag ggaaagacca      5040
     acggctatgg gacgataagc tcggtgagat atccttcgcc ttgagatctt cacatcatgc      5100
     cgcaatagga ttttcaccat attttgcgtt gtttggtaat catatgataa cgcacgcaga      5160
     caactatgaa ttgctgagga ggatagaaat gcttaaagag ggcgagaata ttttgactac      5220
     agacaaactg caaattgtta gaaacaagat catggaaaac atcagtaagg catatcaaac      5280
     caataagaga acgtacgatt tgcgcacaag atacgaacac gtctttagac gaaactttgc      5340
     ccaaagtaac aagatcaagg catttaatgc aaaattagct cctaaattct tgaaggcaac      5400
     tgtagttcga aagtttggta accattgtta tgaattagaa gaaaatggtc aacagatagg      5460
     aaagttccat gccaaagacc tacaaagtgc gtaacctaaa agatgaccgt tttccagctt      5520
     attttgaaca agtagaacag cttaaaaata acctgtgg                              5558
//
ID   Gypsy-25_DP-LTR repbase;    DNA;    INV; 1442 BP.
XX
AC   super_85;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DP_;
KW   Gypsy-25_DP-I; Gypsy-25_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1442
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1536-1536 (2012).
XX
DR   Genome; super_85; Positions  205977  207418.
XX
SQ   Sequence 1442 BP; 473 A; 265 C; 317 G; 387 T; 0 other;
     tgtgacggcc catatttgga tggacttatt tgtgtgcaca gagctgtagc atatctgcat        60
     gcaagggaag aaacgggaat aaagcgaaag cttttgacgg gagagcgagc tttgggttat       120
     cttggtgggt tatctagccc ttgtgcttta gaatgggatt aagaaaacaa aatcaaagct       180
     caagcgctgg atcattcgat ccatagaact aaattgtgga aggtcagttt ggtggtacgg       240
     tgaaataaaa gaaaagatta aaaggttata tgtacacgtg tctgaaaaaa aaaggaaaaa       300
     tctataaatc gtcgaaagta gggtgcacat gccaagctgc cccaaaaatt aagatcagtg       360
     aaaagccgaa agatcagtga ttctccaaag ataaaccctg tttcaagccc caaaaggtaa       420
     ttacataacc ccccgctttg acatgtggct gataaaattt ttcttcacca aaaggggtct       480
     gagctttgcc aatctcggtt tctccagtgt aatttaatat tgacgaaagt tatccaacgg       540
     aggtcgaact tctgccgcac aacggaaatt tgcgatcaac attattttga ccttggcaga       600
     gggcatacag ttgcctctgg aattctatgt cgtggcctgg ataggcacag acatatccat       660
     atcggatgtt cttcaaggaa aatgattgac acgcacacac acacacacac tgaattcaac       720
     cgtagctact attgctatta ttattatttt ttttgcattt aaattttgta tattataatc       780
     taatctagga cacatcaatg catgcaggcc tgttgcagcg atggaaaacc aaatgtaagc       840
     taccactaaa gtaagaaaac accgctttga ttataatttg atttgttctt ctaaactttt       900
     ctcctcttta tatatatata agaaacccct agaattaagt tgctgtaact gtagataaat       960
     aagatattat gaagatttga ggtgatgctg aggatgggtg ttagttggag tgaagttaaa      1020
     atatgaaaat acactgaaga ttgatcaaca tgaaattgga gtagaatatc tgtacagggg      1080
     tattgggaag gaggaacata tagaggttta agggttaaca caagaaatag gcgatcagag      1140
     ttaacatggt agggtgggta aacgcggaga ttacaagacc taactccgtg cggcgatgca      1200
     tatggcacta ttgatttgat ttgtataaca cctaacggcc atgttagcac cagaatctct      1260
     tgtatgtgtt tagctggaac aactgaaaga tcccccccat ccgacgagcc ctagccgaaa      1320
     gatcccacac agtgctaacc ataaaatcta tgcaagttgt ctagtttgtg gaatgcgtct      1380
     cgaaagctac cacaccagaa caccgggaca cattacaaaa gcccaacgtg gggcacgata      1440
     ca                                                                     1442
//
ID   Gypsy-25_DPse-I repbase;    DNA;    INV; 4618 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DPse_;
KW   Gypsy-25_DPse-LTR; Gypsy-25_DPse-I.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-4618
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1317-1317 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3452-3928] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..1016
FT                 /product="Gypsy-25_DPse-I_3p"
FT                 /translation="MNLAAAAATGNGGPSESHSNVRRDVDNDSYMVRGDSQ
FT                 GRTPRSSQTAGNVAPAKAANILLSWRLKFDGSRDAMHVEEFLYRVRALTGQ
FT                 TLGNDDQLLCDNLHLLFTGKASDWFWDFHRRNHQYSWSSFCTAFRQRFDDQ
FT                 KDDFDLWEMIRKRQQKDNESFEDFQSAIEKLAARLSHEISELKLIDILKRN
FT                 AKSALRYELLHLKIQNRSELREEVKKHEHFCKDAGNFLQRNRVTRPHVSEI
FT                 QSEEEELEEESISELRRKRFVCWNCDKTGHRFEDCVAERRVFCYGCGAKNT
FT                 FKPKCEKCNPSENRKRDAQTNTILTHPAMMTE"
FT   CDS           join(1016..3289,3293..4300)
FT                 /product="Gypsy-25_DPse-I_1p"
FT                 /translation="MKEQTFQENTSNPDCPKIRSNRSLVEAQTQTEEIDID
FT                 GESSRSDKLELKYQPKRSTIRLRQFWTKVKKVRKRLVSSVLLSSDNRLFIE
FT                 LSIEEQNFMALLDSGATISCLGSEAAKSFAQRAKAKKCSGNIRTANNESCK
FT                 VVAKITVPITFRDRTKEIEFFIIPALKQNVYLGIDFWIEFGLVARLLTDRS
FT                 AVQELDVGNETRASESPPVHDLSKDQKVRLESVIHSFPSFEREGLGRTKAI
FT                 QHTIEMVPDRPVKQRHWPISPAKEKLMFDEVEKMLALDVIEESNSSWSSNC
FT                 VLVKKGTKNRLCLDSREINKNTRKDAYPLPHIDGILSRLPPAKYITGLDMK
FT                 HAYWQIPLEEKSRHYTAFTIPNRPLYQYKVMPFGLTNAAQTLCRLMDQVIP
FT                 AHLRNRVFVYLDDLLVLSDDFDSHLVLLQEVAMRLRKANLTINIAKSNFCI
FT                 REIKYLGFIIGYGQLKTDPGKIKSIMEFPIPKTVKQIRRFLGLAGWYRRFV
FT                 DNYATVSYPLTELLKKHQPLKWNASAEEAFDKLKSCLTSAPILATPDFKKP
FT                 FLLVCDASTFGLGCVLAQLNEEGIELPIAFMSEKLSKAQRNYSVTELECLA
FT                 VIKGIKKFRAYVEGQDFQVITDHASLQWLMRQKDLSGRLARWAMKLQGFNF
FT                 QISHRKGSENVVADALSRQDEPEVRELNGNGPIVDLTSTEFKSNEYMDLIE
FT                 HIRLNQLKLPDLKIDDNLVYKRTEPSSGDAIADKQTWKLWIPSGLTSDIIS
FT                 RAHDPPGSHSGIGKTVEKVKRYLFWPRMVTQIRAYVSECDVCRQTKSANVV
FT                 LRPPMGKPMISERPFQKLYLDLLGPYPRSKQGNIGILIIVDHNTKFHFLCP
FT                 LKKFTSSKVCDFLENMLFSTFGVPETILTDNGSQFVSGNFKSFLTRFGVTH
FT                 RCTAIYSPQANASERLNRSVLAAIRAYVGKDHTNWDNKLPEISAALRANIH
FT                 RSTGYSPYFLAFGQNMILNGKDYELLRRLNLLSDDTRVEYPDVVQVCRQAA
FT                 QQKVAESHEQNARTYNLRSRVRQLKVGDVVYARNFCQSNALKKFSAKLAPV
FT                 FISAKVIRRVGTMYYQLASEDKKNLGVYHLKDIQLKP"
XX
SQ   Sequence 4618 BP; 1469 A; 954 C; 1053 G; 1141 T; 1 other;
     taaaaacttc catcgaacaa actatacagg cccagttttc caatatgaat ttagccgcag        60
     cggctgctac gggtaacgga ggtccctcag agtcacacag taatgttaga cgagacgtag       120
     acaatgatag ttacatggtt agaggcgatt cccaaggaag aactcctagg agtagtcaaa       180
     cagccggaaa tgtagcaccg gcaaaagcgg caaatatcct actaagctgg cgtcttaaat       240
     ttgatggttc tcgagacgca atgcacgtag aagaatttct atatcgcgtt cgtgctctta       300
     caggacagac tctggggaac gatgaccagt tactttgcga caatctgcat ctgcttttca       360
     caggtaaagc cagcgattgg ttctgggatt ttcatcgaag aaaccaccaa tactcctggt       420
     catcgttctg tacagcgttt aggcaaagat tcgacgatca gaaagatgat tttgaccttt       480
     gggaaatgat acggaaacgt caacagaagg acaacgaatc cttcgaagat tttcagtcag       540
     ccattgagaa gttagcggca cgactttcac acgagataag cgaactcaag ctgatcgata       600
     ttcttaagcg gaatgcgaaa agtgctctgc gatatgagct tttgcattta aaaatacaga       660
     atagaagtga gttgagggag gaagttaaaa agcatgaaca cttctgtaaa gatgctggca       720
     actttctaca gagaaacagg gtaactagac ctcacgtatc agaaattcag agtgaggaag       780
     aagaactcga agaagagagt atctccgagc tacgccgcaa gcggttcgtt tgctggaatt       840
     gcgacaaaac aggtcatcgg tttgaagatt gcgtagcaga acgccgagtc ttctgttatg       900
     gctgcggggc gaaaaatact tttaagccaa agtgcgaaaa atgtaaccca tcggaaaacc       960
     gcaagcggga tgcgcaaacc aacaccattc tgacgcatcc ggcaatgatg acagaatgaa      1020
     agagcaaact ttccaagaaa acacctccaa cccggattgt ccaaaaattc gatctaatag      1080
     gtccctcgta gaggcacaaa cccagacgga ggagatagat atagatggtg aaagttcccg      1140
     ttcagataag ctagaattaa agtatcaacc aaaacgttcg accatacgat taaggcaatt      1200
     ctggaccaag gtaaagaagg tgcgaaaaag acttgtctcg tcggtccttt tgagctccga      1260
     taacagatta tttatagaac taagcataga agaacaaaac ttcatggcct tgctagattc      1320
     gggggcgacg ataagctgtc ttggaagtga agccgctaag tcgttcgcgc aacgcgccaa      1380
     ggcaaagaaa tgctccggaa atattcgaac ggccaataat gaatcttgta aagtagtagc      1440
     gaaaattaca gttcccataa cttttcgcga tcgtactaag gagatagaat ttttcataat      1500
     acccgccttg aaacaaaatg tgtatttagg gattgatttc tggatagaat tcggtcttgt      1560
     agcaagactt ttaacggata gatcggcggt acaagaatta gacgtaggaa atgaaaccag      1620
     ggcttcggaa tccccgccag tacacgatct aagcaaagac caaaaggtta gactagaatc      1680
     cgtgatccat tcgtttcctt cgtttgaaag ggaaggatta ggacgtacga aagctatcca      1740
     acacacgatc gaaatggtac ccgatagacc agtcaaacaa cgccattggc cgatttcacc      1800
     cgcgaaggaa aagttaatgt ttgacgaagt ggagaaaatg ctggcattag acgtgatcga      1860
     ggaatcgaat agctcctgga gtagcaattg cgttttagtt aagaaaggta cgaaaaatcg      1920
     attatgttta gattctcgag aaattaataa gaacactcgc aaagatgcct accctttacc      1980
     acatattgat ggcattctta gtagattacc accagccaaa tacataacgg gacttgacat      2040
     gaaacacgca tactggcaga ttcctttgga agaaaaatct cggcactata cagcttttac      2100
     cattcccaat aggccgcttt accagtataa ggtaatgccg tttggcttaa ctaatgccgc      2160
     tcagacgttg tgccgactta tggatcaggt gatacctgca cacctcagga atcgggtttt      2220
     tgtctatttg gacgatttac tggtgctctc agatgacttt gattcacact tggtgctgtt      2280
     acaagaggta gcgatgcgtt tgcgtaaggc aaatctcacg attaatatag ccaagtcaaa      2340
     cttttgtata cgggagatta aatatctggg gttcataata ggttatggtc agttaaagac      2400
     agatccgggg aaaataaaat ccataatgga gttcccgatc ccaaaaacgg tgaaacagat      2460
     aaggagattt ctaggacttg ctggatggta cagacgcttt gtcgataact atgccaccgt      2520
     cagctacccc ttaacggaac tactaaaaaa gcatcaacca cttaagtgga acgcatcagc      2580
     tgaagaagct ttcgataaac tcaaatcctg cttaacatct gctccaatcc tagccacccc      2640
     cgattttaag aaaccctttt tgttagtatg tgacgcaagc acctttggtt tgggctgcgt      2700
     actagctcaa ttaaacgagg aagggataga attacctata gcgtttatgt ccgagaaact      2760
     ttccaaggcg caacgaaact attcggtcac tgaactcgag tgcttggcag tgattaaggg      2820
     aataaagaag tttagagctt acgtagaagg acaggatttc caagttataa cggaccatgc      2880
     gtccctacaa tggcttatga ggcaaaaaga tttgtcaggt cgcttggccc gctgggctat      2940
     gaaattacag ggatttaatt ttcaaatatc acatcgaaaa gggtccgaaa acgtagtggc      3000
     cgacgcgctg tcacgccaag atgaacccga ggtaagagag ctgaacggca acggacccat      3060
     agtcgacctt acttctacag agtttaaatc gaacgaatac atggatctaa tagaacacat      3120
     aaggcttaat caacttaagt tacccgattt gaaaattgac gataatttgg tgtataaaag      3180
     aaccgaacca tcttcagggg acgcgatagc agataaacaa acttggaagc tttggattcc      3240
     atcaggcctt accagcgata taatttccag ggctcatgac cccccaggck cttcccacag      3300
     tggtattggg aaaaccgttg aaaaggtgaa aaggtacttg ttttggccaa gaatggttac      3360
     acaaatacga gcctacgtat cagaatgcga cgtttgtcgc cagaccaaaa gtgctaatgt      3420
     cgtgctaaga ccaccaatgg gtaagccaat gatttcagaa agaccttttc aaaagcttta      3480
     tctagatttg ttgggcccgt atccgcgttc caagcaaggg aatattggta tcttaataat      3540
     tgtagatcac aacaccaaat ttcatttctt atgtccgctc aagaagttta cctcaagtaa      3600
     agtgtgtgac ttcctagaaa atatgttatt tagtactttc ggggtccctg agactatact      3660
     taccgataat ggttcgcagt tcgtctctgg gaatttcaag tcatttctta ccagattcgg      3720
     ggtaactcac cgctgcactg ccatatattc accgcaagcc aatgccagtg aacggttaaa      3780
     ccgatccgtg ttagcggcta taagagcgta cgtcggcaaa gatcatacta attgggacaa      3840
     caagttacct gaaattagtg cagcgttacg agccaatatc catagaagca cagggtattc      3900
     gccatatttt cttgcttttg ggcagaatat gattcttaac ggaaaggatt atgaactact      3960
     tagacgacta aatctcctat cggatgacac cagagtcgaa tatccagatg tagtacaagt      4020
     atgtcgacaa gccgcccaac aaaaggtagc tgaatcacac gagcagaatg cgaggacata      4080
     caacttacgt agccgggtcc gtcaacttaa agtcggagac gtcgtgtatg cccggaattt      4140
     ttgtcagagc aacgctttaa aaaagttcag cgctaagctg gcgcctgtgt ttatatcagc      4200
     caaggttatt cgccgagtgg ggacaatgta ttaccaatta gctagcgaag ataagaaaaa      4260
     cttaggagtc tatcacttga aagatattca gcttaaacct tagtaaatgg ccttcttcag      4320
     tttaagtctc attgtgagaa caattacgtc ttcaactgtg gtgtaggggc cgaattaagg      4380
     gaacgagtat agaacatcac ggataagcat agttttcttt tggtaatgct taaaagtgca      4440
     gagacatagt aactccgaaa gtggatcgta agctgcaagc tttccgaaaa gctttctaaa      4500
     gagagtcggc gcgcagcgca cgcatttaag cgaaagacgt cacgtttacc ttgacccaag      4560
     agagtagcgt agcgtaggga gagcatagat taaaagcttg accaaaagtt cgctcaaa        4618
//
ID   Gypsy-25_DPse-LTR repbase;    DNA;    INV; 3362 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DPse_;
KW   Gypsy-25_DPse-I; Gypsy-25_DPse-LTR.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-3362
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1318-1318 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 3362 BP; 1020 A; 684 C; 687 G; 967 T; 4 other;
     tgggcgaaag atcatccgat tatgcagttt aaattcccaa catcatccga ttatgcagtt        60
     aaagttccta agatcatccg attatgcagt taaaattccc caaatatcat ccgatcttcg       120
     agcttttggt tcggtaccgc ttggctgaac ttgcagaagt tgggctggag tattgacaaa       180
     gaatcgattg attaaagcgg acgtgtttgt gctatactcg ggaataaata aatatatata       240
     tatatatata tttagccaac gaacagttct ggcaactacg ccatacctcg tgaaccgagt       300
     tcaataaaga cccagaatca ggagtaatta accaggaaag cagtgtaaag aaaagaaaac       360
     atagctggta tgtccgtgat taatttggaa agtgttcgtg gtaaaatata tatatatgaa       420
     tttgtgttat aggacggcgg cccgtagcca cggtaccgct cgtgcgatca tcagtcgcat       480
     aggagtgcat atacggtgtg gtctatgaga ggwgtgttgc cggtggattg ataagacaag       540
     tagtaaaccc gcgggaggca ccgagcagcg aaacctgcag cttgacgttg tccgtcgaaa       600
     gcctcaacaa ccgtgtggat gcacggcgaa aaccaagagg cgcctccgga cccttatttt       660
     tggcgccgtt gacgccaccc gtttatcgag cctccaatga gagtgtagtc cgcagaccga       720
     cgtcgaatck gatcggcaac ctgaagccca gctaaggagt taatttaccc catcttcaag       780
     tgatttagct gcgccagcga cacccaataa tgaactcgaa ttgattgcat tattgttgga       840
     ttcttccgga ggcgcagtcc tactcagcct ggctgacatg tctctcgatc acggcaatag       900
     aggaccatag ttactcgtgg atgtaacaca agcccctttt tcctctagat ttcatgtgcc       960
     aggctaaaaa ccattctctt tcgtcacacg atgtatacag ttttatagtt agttatgtaa      1020
     cacagccaac ataatggttt ttggaaacta atgggtatga gagcaacatt aattttcctt      1080
     gagattacaa agcagtacac tctagtacgc tcatgtgcac atatactcgt attaaatatc      1140
     ttttcttttc cttagaatta tgcaccaacg tcatcattga gctcaacgat cacggatgga      1200
     aaaagcggta ctagcctacc aaaagcgctg tgagtttgta aataagaaca agtacatata      1260
     tgcactgagc tgggaagtaa cctgcgtgtt acatgtaatt ttctattgat atcmccttta      1320
     taaatccgta accataatgt attggtacct ctcacccctt tagaatctgt tacccatata      1380
     tgatggtcat ttttaaatct ttatttttct taatatttct tcgcaattcc ttactaatat      1440
     attaagctat cgagacacaa caaaaatgga tttaattata agttaagaaa accccccccc      1500
     cccaagaatt tagttatatg attagggatt tattgaaata tatatataat gatattgatt      1560
     ttgaagtaca accctaatat gttctaaatt caggactccg ccctcagaaa ggcatgatcg      1620
     aagtggtggg atgataactg tttaacgtta ttcaagggtc tatacggtca ggttacctgt      1680
     atagcatagg tcgggagggt agagaagata gagatactca ctaacaccgg agtttctcat      1740
     catttgagta gagtaattga taagtatgtc cacactttcc acaaccaact tgttagtccc      1800
     ataaccaatt cctggctccg gttaaacctg gattctgttg ttagttttat gtttgtttct      1860
     tctttttttt attattattt twttattttt aaatgtgcac ctaaaacatt atgcgagtgt      1920
     gtgtcagtat gtgataggag agagtagaac gaaccccgac aatccggcga gcttagtcag      1980
     agcatagcta gaggtgcaca cgaaatctct tcatactagt atgggtaaac gacagctatc      2040
     ccacacctgc acgctacata attggcgccc aacgtggggc ccgaagggac atgatctctc      2100
     gtaaagttgg tacttaactt tagtaccaga ggcatgtcat tctggggcta ggctccacca      2160
     tagctctata ttccatccaa aacaataatt ctctggtaat actatactga tagatctctt      2220
     cgggtgggag tacgacagct gttgcatacg gaacctacga ctatttttca tggttggaaa      2280
     agtcgacctg tgtataatct gttgtctctt cctccggatg gactagctta tataggtagt      2340
     tacaatatac tgatatcacg atataggact ccaccaacga gatagctaaa gatgttgatt      2400
     tagggaactg cgggagttat tcaaaagacg gataccccga ctcaaagtta tattcattaa      2460
     attatcttga gcttggctgt agagattcct ttatcaaatt ctagttgggt taggaaaaag      2520
     tcgcagattt taggaatcac gatcttctac ttatgataag tagagactgt ccattatccg      2580
     gacttatacc ttcaaaactg gtaatagaac tggccaacat acacaactta attactcaac      2640
     tattcaaatc gaaacgtaca gttagtggta gaccacctag atcatgcctg gagagggcga      2700
     acatattaag taaatttcat attcgttaac tcatatttgc atattagttt cataatttta      2760
     ttttcattat tatttttttt ttattaagaa attcatacaa atcatggcgg tccaccgaag      2820
     taatgaaaat ttagcttcgg cattgatcaa tccagactcg ctttgcatta tttgccaggg      2880
     aaatttgcgg caagatcagt taatagctac cacgccttgt caccaccgat ttcataatac      2940
     gtgcgtatgc gaacatttga aaagcgaaaa gtcttgtcca gtgtgcaagt cggaatgcga      3000
     acctggtaga ctgcgttacg aaaataatac tctagcagca gaattacacc taagctctgg      3060
     ctccatacca cctaatgttc ggggaaacga agacaatggg acggtacaac tagatccaac      3120
     cttattacgt agaaaaggga gaacaaacag ccgaggtcga gggcgaggag caacccctaa      3180
     acgaggaatg caaacaaggt atcaagctag tttagatcaa tatttatccg agagtcgaca      3240
     gtcggttagt agcaacggaa ataggtcact tagtaacgct caacctgaaa accttacgaa      3300
     ttacatccat tcggtcatgc aaaaccagga gaaatctatg atggaaaacc ttagttcgtt      3360
     ca                                                                     3362
//
ID   Gypsy-25_DWil-I repbase;    DNA;    INV; 4581 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DWil_;
KW   Gypsy-25_DWil-LTR; Gypsy-25_DWil-I.
XX
NM   Gypsy-25_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4581
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4581
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
CC   ~99% identicla to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           245..4564
FT                 /product="Gypsy-25_DWil-I_1p"
FT                 /translation="MSCLNDLISGTLKTGKVDNIRALHKFIYESEGDRNNR
FT                 KRIREFSGFDYDEANAKYKAKAEYVRRNLTNGDLVSICNVLGIKYSVDDLA
FT                 LHIFTNLKMNNLLASQDEDELDDEVDDEIDDETDHESVATERNVATENNLR
FT                 NIPHERASENNNDEYRRINEERDRMMTPRFAISFRDVEENIRIFDGTNTIA
FT                 VEVWINEFNEQATLMCWNDFQKFLFAKKALKGIAKLFVLSERGINSWNSLE
FT                 KALLSEFKSCVSSKDIHEQLMKMKRKNNECVYEYFYRMKDVASRGQIKDDS
FT                 LIEYLIDGIDEKSENKSILYGAKNLIEFKEKLKQYKVMSEKESKKGNGKYK
FT                 NDENSARVKNKMMKTNNKDDVVCYNCGDKGHYSKDCDDKGKGRKCYKCNEF
FT                 GHIAKNCNKREMNGKFEPNTRSLTSKEEITCKVIKIDNIECKALFDTGSKF
FT                 CIIREDLYKRLKQPELSSFDGFLIGFGGGESNKIKPIGHFVNSILIDDQSF
FT                 VLDFHVVPIRLLDVEMIIGEELCLQADIIFSRNGVRVEKFEKESDEIKILK
FT                 IDVANNKDELNIDECASTSAKKEVFDLISNYQPVATKTTNVEMRIILNDDS
FT                 PIFARPRRLAFKEAEFVNEKVEEWLAEGIIEESTSEYTSPVVLVKKHDDSY
FT                 RLCVDFRKINKVCVRDHYPLPLIEDQLDRLQDATIFSTIDLKNGFFHVAVA
FT                 ESSRKYTSFVTHCGQYQFKRVPFGFTNSPGVFQRHVNAIFRHLSKRGIALP
FT                 YVDDVIILARDEEEAVKNLKEVIVTCEEYGLELNLKKCHFLKKRIQFLGHI
FT                 VENKKIYPSPDKIEAVAKFKMPQTVKQVQSFLGLTGYFRKFIPNYACIAKP
FT                 LTELTKNAQKFVCGPEEENAVQILKKLLTENPVLSIYNQSYQSEVHTDASI
FT                 EGFGAVLLQRCPDDGELHPVYYMSRKTTDAQRKYSSYELEILAVITALEKF
FT                 RVYLLGMHFKLITDCDAFTKTLEKKSLCTRVARWVLFLQEYDFDVLHRSGT
FT                 RMRHVDALSRYPIMQINDYGISVGIKKAQSQDEKIRAIIEVLKDNSKTYDD
FT                 YFLKADILYKLVNDVDLIVVPNAMQKQIIGQAHNRGHFGAKKTKDLICREY
FT                 FIPHLEEKIQKYIECCIPCIISSRKVGKQEGLLHPLQKDDIPLLTYHIDFL
FT                 GPLESTHKDYKHILAVIDAFTKFCWLYPTKSTTSNEVITKLTIQSTIFGNP
FT                 AFIISDRGSAFTSQDFLKYCDNEGIKHVKTTTALPRVNGQVERLNAIIIPV
FT                 LSKLSVDDPTKWYRHVSKVQQAINSTYTRSIGTSPFELLTGVKMRTNDDHK
FT                 LRDLIDQETKAIFTDERSELRAKAKAHISKIQDENKKYYNLRRKQARSYSV
FT                 GDLVAIKRTQFGSGLKLKPKYFGPYQVKKVKHNNAYDVEKVGKCEGPKVTS
FT                 TCAEYMKPWSPNRDDEEDDPAFGSNA"
XX
SQ   Sequence 4581 BP; 1582 A; 772 C; 1040 G; 1187 T; 0 other;
     tattttgggt gctcgaccgg gatagattcg agtaggagtg gcgctcatcc ggttacgaag        60
     agttttcccc acatattttg tcgtgataga aagagtgcgg gatacaagag aacaccccac       120
     atacattttt tgcgcgttcg tgcgggagaa gagtgaaaaa aaaaaagtga tttttttttc       180
     ttttaacaat cgtgtcgtat taagtcggtc ctgctctgct agtggtgaaa ttaaaacatt       240
     aactatgtcg tgtctaaatg atttaataag tggtactctg aaaacgggta aagtagacaa       300
     tatcagagca ttgcataaat ttatctatga gagcgaggga gatagaaata accgcaaaag       360
     aattcgagaa ttttctggtt tcgattacga tgaagcgaac gcaaaataca aagcaaaagc       420
     ggaatatgta cgacgaaatt tgacgaacgg tgatcttgtt tcgatttgca atgtattggg       480
     aatcaagtac agtgtcgacg accttgcatt gcatattttc acgaatttga agatgaacaa       540
     tttgttggca tcacaagacg aagacgaatt agacgacgaa gtagatgatg aaatagacga       600
     cgagacagat catgagtcgg tagctacaga gaggaacgta gcaacagaga ataatttgag       660
     gaacataccg cacgagagag caagcgagaa caacaacgat gagtacagaa gaataaacga       720
     agagagagat agaatgatga cgccgcgttt tgccattagt tttcgcgacg tggaagagaa       780
     cattcgtatt tttgacggca ctaacactat tgcagtagaa gtttggatta acgaattcaa       840
     tgagcaagca acgttgatgt gttggaacga tttccagaag tttctgttcg cgaagaaggc       900
     gttaaaaggt atcgcgaaac tgtttgtctt gagtgagaga ggaataaatt catggaactc       960
     tctcgaaaaa gcacttttga gtgaattcaa atcgtgcgtg agtagtaaag acatacatga      1020
     gcaactgatg aaaatgaagc gtaaaaacaa tgagtgcgtt tatgagtatt tttacagaat      1080
     gaaagatgta gcttcacgtg gacaaattaa agacgattca ttaatagaat atttaattga      1140
     cggcattgat gaaaaaagtg agaataagtc gattttatat ggtgcgaaaa atttgattga      1200
     gtttaaagag aaattaaagc agtataaagt aatgagtgaa aaagaaagta agaaaggcaa      1260
     tggtaaatac aaaaacgatg agaacagtgc aagagtgaaa aacaaaatga tgaaaactaa      1320
     taataaagac gatgttgtgt gttacaactg tggcgataaa ggacattact caaaagattg      1380
     tgatgataaa gggaaaggta gaaagtgcta caaatgtaat gaatttggtc atatagctaa      1440
     aaattgtaat aaacgagaaa tgaacggtaa atttgaacca aacacaagaa gtttaacgtc      1500
     gaaagaagaa ataacctgta aagttattaa aattgacaat attgagtgta aagcattgtt      1560
     cgacaccgga agtaaatttt gtatcattcg cgaagatttg tataaacgtt tgaaacaacc      1620
     cgagttgagt agctttgacg ggtttctaat tggattcggt ggcggagaat caaataagat      1680
     aaaaccaatt ggacacttcg tgaattccat tttgattgac gaccaatcgt tcgtgttaga      1740
     ttttcatgta gttccgatta gattgttaga tgtcgaaatg atcataggcg aggaattatg      1800
     tttgcaagct gacattattt ttagccgaaa tggtgtaaga gtagaaaagt tcgaaaaaga      1860
     aagtgatgaa ataaaaattc taaaaattga tgtcgcgaat aataaagatg aacttaatat      1920
     agacgaatgt gcaagcacaa gtgctaaaaa agaggtattc gatttgatat ctaattatca      1980
     accggtagca acaaagacaa caaatgtaga aatgcgaata attttaaacg atgacagtcc      2040
     gatatttgcg cgaccccgta gacttgcatt taaagaggca gagttcgtga acgagaaagt      2100
     cgaagaatgg ttggctgaag gcataattga agagtcaacg tccgaataca caagtcctgt      2160
     ggtacttgtg aagaagcatg acgattccta ccggctatgt gtcgatttcc gtaaaataaa      2220
     caaggtatgt gtgcgtgacc attatccatt gccgctcatc gaggatcagt tggaccgttt      2280
     gcaagacgct acgattttta gtaccattga tttgaagaac ggattctttc atgtggcagt      2340
     tgcagaatct agtcgaaagt atacgtcgtt tgtgacccac tgtggtcagt accaattcaa      2400
     gagggttccg tttggattta ctaattcacc tggagtattc caaagacatg taaatgcaat      2460
     atttcggcat ttatccaaga gaggcattgc gctgccatac gttgacgatg ttatcatctt      2520
     ggccagagat gaagaggaag ctgttaagaa tctaaaagag gtaatcgtaa cctgcgaaga      2580
     gtatggatta gagttaaacc tgaagaagtg tcatttttta aagaaaagaa tacaattttt      2640
     ggggcacatt gtcgagaata agaagatata tccatctcca gataaaattg aggctgttgc      2700
     aaagtttaaa atgcctcaaa ccgtaaagca agttcaaagt ttcttaggtt tgacgggtta      2760
     ttttagaaag tttattccaa actatgcgtg tatagcgaag cctctgaccg aattgaccaa      2820
     gaatgcacaa aaatttgtct gtggccctga agaagaaaat gcagttcaga tcttgaagaa      2880
     gttactaact gaaaatccag tcttaagtat ctacaaccag tcgtaccaat ctgaagtcca      2940
     tactgatgca tccattgaag gctttggagc agttttacta caaagatgtc cagacgacgg      3000
     tgaactccat cccgtatact acatgagtcg aaaaaccaca gacgcacagc gaaagtatag      3060
     cagctacgaa ttagagattc tcgcagtcat aacagcgtta gaaaagttta gagtttatct      3120
     tttgggcatg cactttaagc taatcacgga ttgcgacgca tttacaaaga cgctggagaa      3180
     gaagagcctt tgtaccaggg tagctcgttg ggtacttttt cttcaagaat acgattttga      3240
     cgttttacac cgttcaggta cccgtatgag acatgtcgac gccctcagca gatatccaat      3300
     tatgcaaatt aacgactatg gaatcagcgt tggcataaag aaggcacagt cacaagatga      3360
     gaaaataaga gccatcatag aagttctgaa agacaattcg aaaacttatg atgattattt      3420
     tctgaaagcc gatatcctgt acaaattagt caatgacgtt gatttaattg ttgtcccaaa      3480
     cgcgatgcag aagcagatta ttggtcaggc acataacaga ggacatttcg gggcaaagaa      3540
     gacgaaagac ttgatttgca gagaatactt tataccgcat ctcgaggaaa aaatccaaaa      3600
     atatatcgaa tgctgtattc cttgtattat cagtagccgt aaagttggca agcaagaagg      3660
     cttgttgcat ccgcttcaga aagatgatat tccactttta acttaccata ttgattttct      3720
     aggtcctctc gagtctactc acaaagacta taagcatatt ctggcagtca tagatgcatt      3780
     tacgaagttc tgctggttat acccaaccaa atcgacgact agcaatgaag ttattacgaa      3840
     gctgacgatt caaagcacga tttttggcaa ccctgcgttt attatctcgg atcggggttc      3900
     cgcctttaca tcccaagatt ttctgaagta ctgcgacaac gagggtatca aacacgttaa      3960
     gacgactaca gcacttccga gagtaaacgg ccaagtggaa cgtttaaatg cgatcatcat      4020
     tcctgttctg tcgaagttga gcgttgatga tccgacgaag tggtatcgac atgttagcaa      4080
     agttcagcag gctatcaatt cgacgtacac cagaagtatt ggcacttctc catttgagtt      4140
     actaactggt gtaaagatga ggaccaacga tgaccataaa ctgagagatc ttatcgacca      4200
     agagacgaag gcaatattta cagacgaaag aagcgagctc cgtgccaagg cgaaggcaca      4260
     catctccaag atccaagacg aaaacaagaa gtactacaac ctacgtcgta agcaagctcg      4320
     atcttatagt gttggcgacc tggttgcaat taagaggacg caatttggca gtggtctcaa      4380
     actaaaacca aaatactttg gaccctacca agttaagaag gtgaagcaca acaacgcata      4440
     cgatgtcgaa aaggtaggca agtgcgaagg gcctaaagtg acgtccacat gtgcagagta      4500
     catgaagccc tggagcccaa accgagacga tgaagaagat gacccagcat tcgggtcgaa      4560
     tgcgtaatca gaatggccga a                                                4581
//
ID   Gypsy-25_DWil-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DWil_;
KW   Gypsy-25_DWil-LTR; Gypsy-25_DWil-I.
XX
NM   Gypsy-25_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-424
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 424 BP; 133 A; 82 C; 116 G; 93 T; 0 other;
     tgtgggatgt gcatttgcga agtgtatcaa tcccactgta cacgagagac gagacgacga        60
     tcaagagaga acgtgagcgt gtgagaaaag acgatcaaga gggatgacaa acgaatgaga       120
     gatgacgacg ggagagttgg tttttgcgcg tcaaacaaga cggacgtgtt ttgaggtctt       180
     gcgtcatagt cggatgcaag gtcaagtcga gtaccataga cgggtgctaa aagtcgtgtg       240
     tcaaagtcgg acacttaaag tcgagcgcca aagtcgggcg cgaaaagtcg aagcgtcgta       300
     gacggacgcc aaagttgagc cgagccaaac gtcgattgtc atttcacata gtgtaatctc       360
     tataaagtcg tattttcatg taaaccccct agactataat tatatcgtta aataaaaccc       420
     caca                                                                    424
//
ID   Gypsy-25_DYa-I repbase;    DNA;    INV; 4923 BP.
XX
AC   chr2h_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DYa_;
KW   Gypsy-25_DYa-LTR; Gypsy-25_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4923
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2h_random; Positions 3470017 3474939.
XX
CC   Positions [3801-4178] - Integrase core
CC   'AAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..1132
FT                 /product="Gypsy-25_DYa-I_1p"
FT                 /translation="MNKSEIADWLKANEIEFPTSATLRQLRKLALDAGCQN
FT                 ASEISETISEEEDTKLEEICQGIASAQINSTLEEEEEALDAAIRVAEKKKI
FT                 LAKLMQNDSKMTDDFQMAKQLMVPFSATQKEEAFQWISDFERVCRGVNDSE
FT                 IFQLRCVRMLMKPGTDADLFLRVDRSNSYDTFKESFLKTFGHGNSTADIVL
FT                 LLKDTIFNPSKNTVMGYILQMEEIAMRADIDEKLTVQFIIDGFRDRSSNIA
FT                 LLYSATTIGQLKEMARKYENLRKVPKTSTIRTGIAFAGERGQIRCFNCSAH
FT                 GHYASSCTAPKREKGSCFRCGSLQHRIKDCQQQPKTNPRVVGATGC"
FT   CDS           894..4178
FT                 /product="Gypsy-25_DYa-I_2p"
FT                 /translation="MKIYGRFPKRRPFARESLSLEREVKYAALIVRHMDTT
FT                 LHLVLHQSARKDPVSVVDPFSIGSRIVNSSRKLIRESWEQLVVDQLIRDEE
FT                 ENNTFIPIFNQVGVYFCTDKRQNSNMTFLSAMFDTGSAINLIQRTAIPFKK
FT                 FNDVLSPTEYCGVNGSRINTFGKIFVKLNFQNIEEEISFFVVPDNYVATHV
FT                 LLGRKFLNKFGIKLIFKDKMRGRREIDLLNIDSDPLNIDSDPLNIDSDPFN
FT                 IDSDLLNIDSDLLNIDSDLLNIDSDPLHRLKIELNRSNLDSEPVNRFHIDR
FT                 EPVNIFDIDSDPASRSKHCKPINKLETRQRFQKCDFDKDIEIDREYKSLPY
FT                 IYNIDIFKDDEDFNIDPKLNNSNRSELIEIIRINYLDLHNIPAIQHSYEMR
FT                 LRLKSEEPVRSVPRRLSYQEKKEVDCKIDELLRKGFMRESNSPYSSAIELV
FT                 KKKSGEKRMCVDYRQLNKITIRDGYPLPLIDDCLERLEGNQYFTLLDLKSG
FT                 YHQVKVAESSVQYTAFVAPSGQYEYTRTPFGLMNAPAVFMRFINFILQPLI
FT                 REGNVVVYIDDIAIGSKTLSEHFVTVGRVLRILAAHRLEIKISKCQFAYKS
FT                 IEFLGYTLSEKGISPNHEHTSTIKHLPIPKDRHGMQKCLGLFSYFRRFIPA
FT                 YSKIAKPLQELTKAGSKYELDENCINIFEYLREKLISFPILALYNPNRETE
FT                 LHCDASSEGFGGILLQKQDDNKFHPIAYFSQRATKLEARYESFKLETLAVV
FT                 YSLRKFRIYLEGIPFNIVTDCNAVVLCLGKGRLNSNIARWALELANYNYTL
FT                 KHRSGKYMTHVDTLSRYPSAFNQDFEYEPVVTIQESENKDKIVSVIDSDDI
FT                 NLQLQITQNRDSLIVKLKEKLEHRDVKKFVLSDGIVYRLGENDIELLYVPA
FT                 EMENHVIRRVHENLCHLGTEKCIKEIMRHYWFPDMKSKIESFIGNCLKCIM
FT                 FTVPTHANNRTLHNIPKRPIPFDTLHVDHFGPLPSVISQKKHLLVIIDGFT
FT                 KFVKLFPVNTTSTKEVKTCFSKYFQYYSHPRRIISDRGTCFTSLEFAKYLL
FT                 ENNIEHVKVATASPQANGQVERVNRTVKAMLAKITEPI"
XX
SQ   Sequence 4923 BP; 1764 A; 774 C; 958 G; 1427 T; 0 other;
     acttcagaag tgggatagca accttttatg cacccgccta catcaatatt tcgacgtacc        60
     cgacaataca cacgtttttt tttcacaaag ttaaaatagc gtgccctacc aattggccat       120
     gaataaatcg gagattgcgg attggctgaa ggccaatgaa attgagttcc caacaagcgc       180
     aacgcttcga caactgcgta agcttgcatt ggacgccggt tgccaaaacg ctagcgagat       240
     ttctgaaacc atatcagaag aagaagacac caaactggag gaaatatgcc aggggatcgc       300
     gagcgcccag atcaatagta cattggaaga agaagaggaa gcactagacg ctgcaataag       360
     ggtggccgag aagaagaaga tactggccaa gttgatgcag aacgacagca agatgacgga       420
     tgacttccaa atggctaagc aactcatggt tccgttctcc gccactcaaa aggaagaagc       480
     attccaatgg atttcggact tcgaaagagt ttgcagagga gtaaatgata gtgaaatttt       540
     tcaacttcgc tgtgtccgaa tgctgatgaa accaggaaca gatgccgacc tgttcttgcg       600
     tgttgaccgt tcgaattctt acgatacatt taaagaaagt tttctcaaga catttggcca       660
     tggaaattca acagccgata tcgtattgct tctgaaggat accatcttta atcctagcaa       720
     gaacaccgtc atgggctaca tacttcaaat ggaggaaatt gctatgcgtg cagatattga       780
     tgaaaagtta acagtacaat tcataattga cggttttcga gatcggtcat ccaatatcgc       840
     gctattgtac tcagcaacca caattggaca attgaaggag atggctcgga aatatgaaaa       900
     tctacggaag gttcccaaaa cgtcgaccat tcgcacggga atcgctttcg ctggagagag       960
     aggtcaaata cgctgcttta attgttcggc acatggacac tacgcttcat cttgtactgc      1020
     accaaagcgc gagaaaggat cctgtttccg ttgtggatcc cttcagcata ggatcaagga      1080
     ttgtcaacag cagccgaaaa ctaatccgag agtcgtggga gcaactggtt gttgaccagt      1140
     tgatacgaga tgaggaggag aacaatacgt ttattcctat atttaaccag gtaggagtat      1200
     atttttgcac tgataaaaga caaaatagta atatgacgtt cctttctgcc atgtttgata      1260
     ccggcagcgc cattaattta atccagcgca cagcgatacc atttaaaaag tttaatgacg      1320
     tattgagccc aacagaatat tgcggtgtta atggatctcg aataaataca tttggaaaaa      1380
     tttttgttaa acttaatttt caaaacatag aagaagaaat atcatttttt gttgtacccg      1440
     acaattatgt agcaactcat gttcttttag gtcgtaagtt cttgaacaaa tttggaataa      1500
     aattaatttt taaagacaag atgagaggaa gaagagaaat tgacttattg aatattgata      1560
     gtgacccatt gaatattgat agtgacccat tgaatattga tagtgaccca ttcaatattg      1620
     acagtgactt attgaatatt gacagtgact tattgaatat tgacagtgat ttattgaata      1680
     ttgatagtga cccattgcat agattgaaaa ttgaattgaa tagatcgaat ttggatagtg      1740
     aaccagtaaa tagattccat attgataggg aaccggtgaa tatatttgat attgatagtg      1800
     atccagcgag tagatcaaaa cattgtaaac ccataaataa attagaaact agacagagat      1860
     ttcagaaatg tgattttgat aaggatattg aaatagatag agaatataag agcttaccat      1920
     atatatataa tattgatata tttaaggatg atgaagattt taacattgac ccgaagttaa      1980
     ataatagtaa tcgcagtgaa ctcattgaaa taataagaat aaattattta gatctacaca      2040
     acattccagc gattcaacat agttatgaaa tgaggctaag acttaagtca gaagaacctg      2100
     ttcgctctgt tccgagaaga ctttcatatc aggagaaaaa ggaagtagat tgcaaaattg      2160
     atgaattgtt aagaaaagga tttatgcgag aaagtaattc accttatagt tcagctattg      2220
     aactggttaa gaagaaatct ggagaaaaac ggatgtgtgt ggattataga caactcaata      2280
     agataacaat ccgtgatgga tatccattgc cgctcataga tgactgttta gaaagattag      2340
     aagggaatca atatttcaca cttttagatt tgaagagcgg atatcatcag gtgaaagtag      2400
     cagagagttc agttcagtac acagcgtttg tagcaccctc tggtcaatac gaatatacaa      2460
     gaacgccttt tggacttatg aatgcaccag cggtatttat gagatttata aattttattc      2520
     tgcaaccatt gatacgtgaa ggaaatgtag tagtttatat agacgatatt gctatcggtt      2580
     ctaagacatt gagtgaacat tttgtaactg taggaagagt attaagaatt ctggcagcac      2640
     atagattaga aattaaaata agtaaatgtc agtttgctta taaaagcatc gaatttttag      2700
     gatacacact tagtgaaaaa gggataagtc cgaatcacga acacacatcg actattaaac      2760
     atcttccgat tccaaaggat cgccatggta tgcaaaagtg tttaggatta ttttcttatt      2820
     ttaggcgatt tattccggca tactcgaaaa tagcaaaacc attgcaagaa ctcacaaaag      2880
     ctggctctaa gtatgaactc gacgagaact gcatcaatat ttttgaatat cttcgcgaga      2940
     aattaatttc ttttccgata ttagctcttt ataatcccaa cagagaaaca gaattgcatt      3000
     gtgacgcaag tagtgaagga tttggtggaa ttttattaca aaaacaagat gataataagt      3060
     ttcatccaat agcttatttt tcacaaagag caacaaaatt agaggcaagg tatgaaagtt      3120
     ttaaattgga aacattagca gtagtttatt cattacgaaa attcagaata tatctagaag      3180
     gaattccgtt taatatagta accgattgta atgcagtagt tttatgccta ggaaaaggac      3240
     gccttaattc taatattgcc agatgggcct tagaattagc taactataat tataccctta      3300
     aacatcgcag tggaaaatac atgacccatg tggatacgtt aagtagatat ccttcagcct      3360
     ttaatcaaga ttttgaatat gaaccagtag tgacaataca agaaagtgaa aataaggata      3420
     aaatagtttc agtaattgac agtgatgaca taaaccttca gcttcagata acgcaaaata      3480
     gagatagtct tatagtaaaa ttaaaagaaa aattagaaca tagagatgta aaaaagttcg      3540
     ttttaagcga tggaattgtt tatagattag gtgaaaatga tatagaatta ttatatgtac      3600
     cagctgaaat ggaaaaccat gtaatcagga gagttcacga gaatttatgt catttaggta      3660
     cagagaaatg tataaaagaa ataatgagac actattggtt tccggatatg aagtctaaga      3720
     tagaatcgtt tattggaaat tgtttaaagt gtattatgtt tacagtaccc acacatgcta      3780
     ataatcgaac attgcacaat ataccaaaac gaccaattcc ttttgacaca ttacatgtgg      3840
     atcactttgg accactgccc tccgttattt cgcaaaagaa acatctatta gttatcatcg      3900
     acggatttac taaatttgtt aaattgttcc ctgtgaacac aacgagtaca aaagaagtca      3960
     aaacttgttt ttcaaaatat tttcaatatt atagtcaccc acgtagaatt attagtgata      4020
     gagggacatg ttttacgtcc ttggagtttg caaaatattt gttagaaaat aatattgaac      4080
     acgtgaaagt agcaactgca tcacctcaag caaacggtca ggtggagaga gttaatagaa      4140
     cagtgaaagc gatgttagct aagataactg aaccaattta gcatgaagat tggagtaagc      4200
     ttcttgtaaa ggcagaatat gccatcaata attcagtaca ttcaacaacg aaagaattac      4260
     cttcagtatt attatttgga gttcaacaga gaggttgtaa tattgatgca ttaacggaat      4320
     atttagatga tagaactgat atggcacaat gcgatttaga aaacgttcgt aagaactcct      4380
     taaataaaat agaacagtgt cagcgaagaa gcgaagaaca ttttcagaaa aatcataaga      4440
     gccacgtaga atttttagaa ggcgattttg ttggccacaa tcggcacaaa taagaaattt      4500
     ttacctaaat ataagggccc atacgtcatt aaacgaattt taccaaatga tagatacgtt      4560
     ttaacagaca tagaaaattg ccaaattagt caaattccgt atggaggaat agtagaggca      4620
     tgtcggttaa gaaaatgggc agattggcgt aaccagtgcg gaaatatctc ctaatttgta      4680
     gaataatatc ttaacttatt ttctctcttt atatacctta tactgtacat attttcattt      4740
     ttttattatt attatttctc ttttacttat attctattca aattttaata tatatttaac      4800
     taaactttaa tatttaggta gccaaaactt caagacatgt aaataattaa aatcaacaat      4860
     gtacatattg taaataattg aaatcgacga tcgaggacga tctaattgtc aggatggccg      4920
     agc                                                                    4923
//
ID   Gypsy-25_DYa-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   chr2h_random;
XX
DT   07-APR-2011 (Rel. 16.04, Created)
DT   07-APR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_DYa_;
KW   Gypsy-25_DYa-I; Gypsy-25_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-237
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; chr2h_random; Positions 3469780 3470016.
XX
SQ   Sequence 237 BP; 97 A; 32 C; 42 G; 66 T; 0 other;
     tgttagcagg gatggtataa gtaccatccc atttaccatt tagtatttag tagtgtgtat        60
     tcagcattta gtattttagc atttagcatt agatcagaga agtagagatt atgtaaagaa       120
     gaggcctacg gacacacttg attattggac acgagagaga taacatataa acagaataaa       180
     aacacaatta aaaatcaaaa gaattaaaat acatcttaaa cctaaacagt ggtaaca          237
//
ID   Gypsy-25_HeAr-I repbase;    DNA;    INV; 6282 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5573-5573 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1640..6070
FT                 /product="Gypsy-25_HeAr-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MNTTNVVPEFDPNNRSQDVERWLRKVNECAAIYNWDE
FT                 KQIIHYSLQKLAGLAKKWYESLPTLNFSWQEWQCKMKKAFPSEENFGKLLE
FT                 EMLNRKSRSDETLRDYFYDKLSLLSRCEISGRKAVDCIIYGIADVSVRNGA
FT                 QALKCSEPEDLLNYLASQQINQTKENPRHLSSSNNNAFRKRDFRTSFNGQN
FT                 RNSPANRGNDVTCFNCQERGHSYINCSKPIVKCVKCGRVGHNFDNCYKKPL
FT                 LTHNTNSQSEQPSDKKVLKITSANLNIDLLESCPVDNQKASTIDPQLSSSA
FT                 SQVPAVVNNKYFKKICVNDQPYDAFIDFGSDCSLVKSSVAKSLGLTKSFDN
FT                 LPIVRGFGNSIIEPEFRSTILVKIDEVETELNVLAVDDAFLPASLLIGQNF
FT                 TELPSVMVKKDSESLFFYHQTPEKLAHDSTIKLFVKKDTIVTKGGLVEVYC
FT                 KEPFSGDIYIDGGTRMSPNQEYHLHQGCYKISDKTAIIFVTSLTTAPLIYK
FT                 ADTLLARVNPIMETRTFAINTQNQCLELPPLDITEIKVGQNIQFETIERLH
FT                 KLLNKYRSCFAQNLSELGCAKNIKMNIELNDKTPIVYRPYRLSFHERQKVR
FT                 EIVDDLLNNDIVQESESNYSSPILIVKKKNGESRLCVDYRALNSKTIKDKY
FT                 PLPLIDDQISNLSGNTFFTTLDLASGYYQIPMSEESRHITAFVTPDGHYEF
FT                 KRMPFGLANAPAVFQKMINRLLGQRRFDSVLAYMDDLLIPAATIEQSFQKL
FT                 EDILKLIQDAGLTLKLSKCRFFDREIEYLGYEVSADGIKPSQRKIAAVRDF
FT                 PVPTNIHELRQFLGLASYFRRFVKGFGEVARSLTKLLKKDVPWQWTLDQEN
FT                 SFKSLKSRLVERPLLALYDPNLETELHTDASSLGLGGILMQWQSSPRVLKP
FT                 VAYFSRQTTAEEKFFHSYELETLAVVCSLKKFRPYLLGQKFSVYTDCNALR
FT                 TTLTKRDLIPRIARWWLQISEFDFNIEYRPGCRMLHVDALSRNPLPTDSTD
FT                 SVKTMNITSGNWIITLQIADPELQRIVRILKPNTEEENTEIKKNYTVKNHT
FT                 LYRKVGEDLRLVVPKSARWQICKSNHDDIGHFGFAKTFERIQSQYWFPKLR
FT                 RFVKKYVSACIECAYNKDNASRTRKGFIYPIPKIEKPFHTLHLDHLGPFVR
FT                 SKTGNCYILTIVDAFTKYIFARPVKDTKTKNVIKVLKRLFEDFGVPTRIIS
FT                 DRGTAFTSGQFKEFCCSNGIKHVLNAVACPRANGQAERFNQTILTSLSSQN
FT                 FGKDERTWDEQLGKVQWGINNTINATTKKCPSELLFGTKLSNISDNMLMVE
FT                 DEEASQLTNNNSILSEHETSATEIDKGDSNREVTDASNLTEIRREASLNIS
FT                 KSQKRLKDSHDSKRSPAMLYSVGDLVKVTKTNFYNDGKSKKLMPKFIGPYK
FT                 IAKSLGNDRYQIVNVPGFNSKRYKSVVAADRLRPWIHVKAYELNKSSGSES
FT                 SSSSDSDSQNND"
XX
SQ   Sequence 6282 BP; 2038 A; 1131 C; 1290 G; 1822 T; 1 other;
     aatcagaagt gctaagaccc acgagccatg gctgagagca accgtaagta atttatgaat        60
     aatttttgct atttactaag aagaaatatt atattcgttg cgagcaaatt gtcaaaaatt       120
     taaaattata cactatacac acacagattt cacacccatt gctctccgga gtcacaggca       180
     ccccttgtgg gcactttaca ctagtgatca tcgaaaacga tgattcggtt aaacgcatgc       240
     gctatatttt ggtcggggca actctccgat aatattggcg cggcgctttg gccgattcgt       300
     tattttcaaa tgacggttgt atcgttatta ctgctattaa tttaattagt aattgagctg       360
     atagtagtga ttgatacgaa tacatgcggg gttcatcatc atcatcatca gcctatcgca       420
     gtccactgct ggacataggc ctctccaagt gcacgccact gagatcgatt agttaaaatt       480
     attagaaggt atgttataga tcttatgcaa gataaataag cttcggatga agggtggtaa       540
     atcatacagt atgaagtkaa tcatgtaggt gaattgctag ccatgtaggt gagctatgag       600
     ttctttaaca gccatgtagg tgagcaagag gttaatcatg taggtgaatt gctagccatg       660
     taggtgagct atgcgtacct gaacagccat gtaggtgagc gagaggttaa tcatgtaggt       720
     gaattgctag ccatgtaggt gagctatgcg tacctgaaca gccatgtagg tgagcgagag       780
     gttaatcatg taggtgaatt gctagccatg taggtgagct atgcgtacct gaacagccat       840
     gtaggtgagc gagaggttaa tcatgtaggt gaattgctag ccatgtaggt gagctatgcg       900
     tacctgaaca gccatgtagg tgagcgagag gttaatcatg taggtgaatt gctagccatg       960
     taggtgagct atgcgtacct gaacagccat gtaggtgagc gagaggttaa tcatgtaggt      1020
     gaattgctag ccatgtaggt gagctatgca tacgttaaca gccatgtagg tgagcaagag      1080
     actaatatta gcatgatgat gatcacatta atattggaag ccaggagagc tagtgagcta      1140
     gctagctgtg aagaaacctg gcgtgatgtc aaactgttcg ttttgacaag tatctataaa      1200
     tatttgaatt aattagctat cctaaataag tttacaatct gggcgtccag tatgagaagt      1260
     ccgtcttcga gtctcgaata cttcattaac attatctaaa taacaatgtc atttagtcgt      1320
     aaagttcagc tttgttgggc ttggatattg aagtagtctg attcacagtt atttctattc      1380
     agcaatcaaa ataaaattcg attctttctg tacgtatgtg tagacaaaat aaaaacagat      1440
     atgaagtgct cgacgaattt caggtcatcg agccgaagag tccactccag agcgacctag      1500
     tcggcgtcgc cgtagatcat catcgagtga atctgggtca cctgtactac ccgcaaaagt      1560
     caagcgatca tcaaaaagtc tgacagccgg tgacctgttg aaaatcatca ctgcgctaca      1620
     ggatggctca agtaagaaca tgaataccac aaatgttgtc ccagagtttg accctaataa      1680
     taggtcacaa gacgttgagc gatggttgag aaaagtaaat gaatgtgccg ctatttacaa      1740
     ttgggatgag aaacagatta tccactattc attgcaaaag ttggctggtt tagccaagaa      1800
     atggtacgag tctcttccta cgctcaactt ctcgtggcaa gaatggcaat gtaaaatgaa      1860
     aaaggctttc ccgagtgaag aaaactttgg aaagctatta gaggaaatgt taaaccgcaa      1920
     gtctcgttct gacgaaacac tccgtgacta tttttatgat aagctgtcat tattgagtag      1980
     gtgtgaaata agtggacgca aagcagttga ctgtatcatt tatggaattg ctgacgtttc      2040
     tgtgcgtaat ggagcacaag ctctcaaatg tagtgaacca gaggatttgt tgaattactt      2100
     ggcttcgcag caaattaatc aaacaaaaga aaatccacgt catctttcct cttctaacaa      2160
     taacgctttt cgaaaacgtg attttcgcac tagtttcaac ggacaaaata ggaattcccc      2220
     tgcaaatagg ggaaatgatg ttacatgttt taactgccaa gaacgcggac actcttacat      2280
     aaattgttca aaacccatag tcaaatgcgt taaatgtggc agggtagggc ataactttga      2340
     caattgctat aaaaaacctc ttcttacaca taacactaac agccaaagtg aacagccttc      2400
     tgacaaaaag gtcttaaaaa taacctccgc gaacttgaac attgatcttt tagagagctg      2460
     tccagtggac aatcaaaagg cttcaacaat agaccctcag ctgagcagtt cagctagtca      2520
     ggttccagct gttgttaaca ataaatactt taaaaaaatt tgtgttaacg accaaccgta      2580
     tgatgcattt atcgattttg gaagcgactg cagccttgtt aaatcttcag ttgctaaatc      2640
     acttggttta accaaaagtt tcgataactt gcctattgtg aggggatttg gaaattccat      2700
     tattgaaccg gaatttcggt caacaattct agtaaaaata gatgaagtag agactgagct      2760
     gaatgtgttg gctgttgatg atgccttttt gcctgcatca ttactaatag gtcagaactt      2820
     tacagagcta ccctctgtaa tggttaagaa agatagtgag tcattgttct tctaccatca      2880
     aacacccgaa aaattggctc atgattccac aataaaacta tttgttaaaa aggatactat      2940
     tgttacaaaa ggaggtttag ttgaagtata ttgcaaggag cctttctcag gggatattta      3000
     tattgatggt ggtacaagga tgagtcccaa tcaggagtac catttacatc agggatgcta      3060
     taaaatcagt gacaaaaccg ctattatttt tgtaacctcg cttactactg ctcctttaat      3120
     atataaagcc gataccttat tggctcgggt gaatcctata atggagacta gaacatttgc      3180
     tataaacact caaaatcaat gtttggaact accgccctta gatataacgg aaataaaggt      3240
     aggacaaaat attcaatttg aaacaatcga aagactgcat aaactcttaa acaaatatag      3300
     gtcttgtttc gctcaaaacc tcagtgagtt aggctgcgct aaaaatataa aaatgaacat      3360
     agaacttaat gacaaaactc ctatagtata cagaccttat aggttatcct ttcatgaaag      3420
     gcaaaaggtt agagaaattg tagatgacct attaaataat gatattgttc aagaatctga      3480
     atccaattat tctagtccta ttttaattgt taagaagaaa aatggtgaat cgcgattgtg      3540
     tgtagattac cgagccctga atagtaagac cattaaagac aaatacccct tgccattaat      3600
     tgatgaccag atttcaaatt tgagtggtaa taccttcttt accactttag atctagcctc      3660
     aggctattac caaataccaa tgtcagagga aagccgtcac atcacagcat ttgtcactcc      3720
     agacggccac tatgaattca aacgtatgcc gtttggattg gcaaatgcgc ctgccgtatt      3780
     tcaaaaaatg attaatagat tattgggaca gcgtagattt gattccgtgc ttgcttatat      3840
     ggacgacttg cttatcccag cagctactat tgagcagagt ttccaaaaac tagaggatat      3900
     tttgaagcta atacaagatg cgggccttac tttgaaattg tcgaagtgtc gattttttga      3960
     tagagagata gagtacttgg gctatgaagt ctcagccgat ggtataaagc ctagtcaaag      4020
     aaaaattgcg gcggtcagag attttcccgt cccaacaaat atccacgaac ttcgacagtt      4080
     tcttggtctg gctagttatt ttaggagatt tgttaaagga ttcggagagg tagctagatc      4140
     tctaacaaaa ttgttaaaaa aggatgttcc atggcaatgg acattggatc aagagaattc      4200
     atttaaatct ttaaaatcgc ggcttgtcga acgaccctta ttagcccttt atgatccaaa      4260
     tcttgaaaca gagttgcaca cagatgccag ttccttgggg ttgggtggta ttctcatgca      4320
     atggcagtcc agtcccagag tacttaagcc agtagcatat tttagtagac aaaccacagc      4380
     agaagaaaaa ttctttcatt catatgaatt ggagacactg gcagtggttt gctctttaaa      4440
     gaaattccgc ccttatctcc taggccaaaa attttctgtg tacaccgatt gtaacgctct      4500
     gaggaccaca ttaacaaaaa gagatctgat cccacgcata gcgcgctggt ggctccagat      4560
     cagcgaattt gactttaata tcgaatatcg ccctggttgt cgtatgttac acgtcgatgc      4620
     tcttagtaga aatcctttac ccactgattc gactgattct gttaaaacta tgaacattac      4680
     ctcaggtaat tggataatta ctttgcaaat tgctgatccc gaattacagc gtattgtgag      4740
     gattctgaaa cctaacacag aagaggaaaa cactgaaatt aagaaaaatt atacagtcaa      4800
     aaatcatact ttatatagaa aggtcggtga ggatttgcga ttggtggttc ctaagagtgc      4860
     taggtggcaa atttgcaaat ccaaccatga cgacattggt cattttggat ttgcaaaaac      4920
     cttcgaacgc atacagagtc aatattggtt tcccaaatta agacgtttcg tcaagaaata      4980
     tgtatctgct tgcattgaat gcgcatataa taaagataat gctagtagga cacgaaaggg      5040
     gtttatttat ccaattccca aaattgaaaa gccatttcac actttacatt tagatcattt      5100
     aggaccattc gtaagaagta aaactgggaa ttgttacatt ttaacaatag ttgatgcttt      5160
     cacaaaatac attttcgcca gaccagtcaa agacactaaa actaaaaatg tcattaaagt      5220
     tttaaaacgt ttatttgaag attttggggt cccaactaga ataatttcgg accggggaac      5280
     cgcatttaca tccggacagt tcaaagagtt ttgctgtagt aatggcatta aacatgtgct      5340
     taacgcagtt gcttgtccca gggcaaatgg tcaggcagaa cgttttaacc aaactatatt      5400
     aacatcttta tcgtcccaaa actttggtaa agacgaacgt acttgggatg agcaactggg      5460
     caaagtacag tggggtatca acaatacaat taacgccaca acaaaaaagt gtccatcaga      5520
     attgttattt ggtacgaagc taagcaacat ctctgacaac atgttaatgg ttgaggatga      5580
     ggaagcttct caactgacaa ataacaattc cattttaagt gaacatgaga cttctgcgac      5640
     agaaatcgat aagggtgata gtaatcgtga agtaaccgat gcttcaaatc tcaccgaaat      5700
     tagacgtgaa gcatctttaa atattagcaa aagtcaaaaa cgactgaaag attcccatga      5760
     ttcgaaaagg tctcctgcta tgttatattc agtaggtgat ttagttaaag tcactaaaac      5820
     caacttttac aatgatggaa agagtaaaaa gttaatgcca aaatttatcg gaccgtataa      5880
     aatagcgaaa tctctaggta acgaccggta tcagatagtc aacgtgccag gttttaatag      5940
     taaacgatat aaatcagttg tagccgctga taggttacga ccttggatcc atgtcaaagc      6000
     ctatgaacta aacaaatctt ctggttccga atctagttca tcatcagact ctgacagtca      6060
     aaacaatgac tgactaaaac aatgtttata taaaaattac tttattttta tttatttttt      6120
     taatttatgc atcatgtatt tttcgactgt atttaaattg ctattaaaat gtaattctta      6180
     attatgtata aatatgaatg taatccatct ttcataatgg acactgagtg ttgtgatatt      6240
     tttgtcgtgc tccggaggaa gcactttatg tggatggccg ag                         6282
//
ID   Gypsy-25_HeAr-LTR repbase;    DNA;    INV; 640 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-640
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5603-5603 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 640 BP; 222 A; 56 C; 100 G; 261 T; 1 other;
     tgttgtgatt tgtaaatatc taagataaaa gtgtatttta gaataagaaa tataattaca        60
     aagtcatttt attttactaa tttattatac tggcaaccca caatcattat tgtattttat       120
     ttttaccgga agttgtggtt gtgatttgta aatttttaac aaataaaata ttatttagaa       180
     taagaaatat attttatata attataatcg catattaatt tttaaatgat gttcacatta       240
     attgttgtat ttaatcttca ccggaagttg aaatgcattt aaaatgtcaa tttatacagg       300
     aagtgtgtct tctttatatt ggcgggaaag gtattacaat attttcaacc agaatagtmt       360
     tttaaattaa attgtacata agtggaaagg gttgaaaata tttatacttt aatagtttgt       420
     atgttgttat gtatttcgaa tatttttaag gaagttgtgt aaaaataaaa caataagtgt       480
     attgattact gctgctttct tgttcagtag attgtaagtt caggcagttg agattgtgaa       540
     ttcgaagcgt cgacatcaag aagtaataat cttgtagtct tatttcgatt gtagaagaat       600
     agtaattaaa gtatttattc tcaactctga ttttatttca                             640
//
ID   Gypsy-25_LH-I repbase;    DNA;    INV; 4270 BP.
XX
AC   ADOQ01005476;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_LH_;
KW   Gypsy-25_LH-LTR; Gypsy-25_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4270
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005476; Positions   20266   15997.
XX
CC   Positions [1863-2285] - Reverse transcriptase
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..1110
FT                 /product="Gypsy-25_LH-I_1p"
FT                 /translation="MSRKLQFAFQYVASPRDKKTSIIAITSIRTEDDKEYV
FT                 LPQEMRFVSEHEDLMKTDVYKRVKKSLTQRGQDRTVWITLTKEMEQTYFDE
FT                 EGNIMFNDLYLEQIIKTDIVESTQKKESQLNLKHIAEKFMIEKFTSKHSNA
FT                 KQWLETFEKECRRFEINEDNTKIEILRLFLDKSCLDWHSATLTLLTVEAGW
FT                 SEWKERFLESFADKGWTTGIYAIYYRYKEGSHTLSEYAMRKEKLLLDMDKD
FT                 ISSKTLVLLIAAGLPEFVRNKIDKENCKNSTELLHEIKKCENLGNKNSFTK
FT                 KKEDKYDNKKKFEGKQPCKNCESLNKGIRYHPEDSCWFKRKERNEGRVIGS
FT                 NSVIEVNLNTEEKNE"
FT   CDS           1392..3533
FT                 /product="Gypsy-25_LH-I_2p"
FT                 /translation="MIKKFKLIQDENLQISQKKIMIDTKKQKTKIDNKDNK
FT                 TKQCSINFNEHIEPDEFQIKLEHLDNIKKIKIEKLIEKYKTVFAKDKYDIG
FT                 TVKDYEARIELIVDKYCSKRPYRCSIEDKKEIETQVAKLLEKNLIEESYSP
FT                 FAAPVTLAYKRDEGKKNRLCIDFRDLNKNIVPQAQPFPLIDDLIIKTRNCK
FT                 YFTTLDINSAFWSIPLRIEDKKKTGFVTQEGHYQWTCLPFGLKTSPAIFQR
FT                 ILSNILRKHKLTEFTINYIDDILIYSTNFEEHIRHIEQVLEAIIREGFRLK
FT                 FKKCSFAANSIKYLGHIIEDNTVRPIKDNLISIQNFPTPKTQKNIRQFLGK
FT                 INFYHEYIPNSSITLNPLHRLLKKDIEFIWSEECEKSFTKIKKLLCDQPVL
FT                 EIFDKDLPIKIYTDASLEGIGAILKQVQIDGREKPVAYFSKKLNEAQKRKK
FT                 AIYLECLAIKEAVKYWQHWLIGRTFEVYSDHKPLENLNIKARTDEELGELT
FT                 YYLSQYNFKIKYIPGKDNAEADCLSRNPVLEPTENTEEALTIVNMTQIDEI
FT                 RTDQEKNEIIRKMKPKLIKKNGIFYKKVKNKEKIILSEELSIKLMKDIHRE
FT                 WCHTGIRQTMNRICPYYTSKNLTENIKKMCKNCDICIKNKTRGQSKFGLMS
FT                 HLGPATEPYEIMSIDTIGGFGGRRSTKKYLHLLVDHYTRYAFILTSKTQNA
FT                 TDFIKLRQKRVRNR"
XX
SQ   Sequence 4270 BP; 1940 A; 608 C; 732 G; 990 T; 0 other;
     aatagttgtc ttataaaacg acaatttttg tttataatgt cgagaaaatt gcagttcgca        60
     tttcaatatg tggcatcgcc gagggacaag aagacaagta ttatcgccat aacctcaatt       120
     agaacagagg atgacaagga atatgtgttg ccacaagaaa tgagatttgt aagcgaacat       180
     gaagatctga tgaagacaga tgtttacaaa agagtaaaaa aaagtttgac tcaaagaggt       240
     caagacagaa cagtgtggat tacactaaca aaagaaatgg agcagacata ctttgatgaa       300
     gagggtaata taatgtttaa cgacttatat ttagaacaaa taataaaaac agatatagta       360
     gaatccactc agaaaaaaga aagtcaactt aatttaaaac acatagcaga aaaattcatg       420
     attgaaaaat ttacatctaa acactcaaat gcaaaacaat ggctggagac atttgagaaa       480
     gaatgtagaa ggtttgaaat caatgaagat aatacaaaaa tcgaaatatt gagactattc       540
     ctggacaagt catgtttaga ttggcactca gcaaccctca cattattgac agtggaagct       600
     ggatggtctg aatggaaaga aagattttta gaatcatttg cagacaaagg atggactaca       660
     ggaatatatg ctatatatta taggtataaa gaaggttcac acacattgag tgaatatgct       720
     atgaggaaag aaaagctgct actagatatg gacaaggaca tcagttcaaa aaccctagta       780
     ttgctcatag cagcaggatt acctgaattt gttagaaata agatagacaa agaaaattgt       840
     aagaactcga ccgaattatt gcatgaaatc aaaaaatgtg aaaatttagg gaataaaaat       900
     agttttacga aaaagaaaga agacaaatac gacaacaaga agaaatttga aggaaaacag       960
     ccatgcaaga attgtgaaag cctaaataaa ggcattagat atcaccctga agactcatgt      1020
     tggtttaaaa ggaaagaaag aaatgaaggt agagtaatag gcagcaactc agtcatagaa      1080
     gtaaatctaa acacagaaga aaaaaacgaa taatcacacc attgattaaa ataaaaatat      1140
     tattagaaga taaattagag gtaaaaggaa catatgatcc aggttcccaa gtttccctaa      1200
     taaatccaaa attaattaaa atagagaaaa aaacagaaga tgtaaataaa atatttttaa      1260
     aaacagtcaa tggtgtgaca catacaaaag gtttagtaac tataaaaata aaaatctttg      1320
     acatagaaga atacattgat gtattcatta cagagaggga tgattttgaa gatttcatca      1380
     taggattgga tatgataaaa aaattcaaat taattcaaga tgaaaattta caaatatcac      1440
     aaaaaaaaat aatgatagat acaaaaaaac agaagactaa aatagataat aaagataata      1500
     aaactaaaca gtgttcaata aactttaatg aacacataga accagatgaa tttcagataa      1560
     agctagaaca tctagataat ataaagaaaa ttaagataga aaaactaata gaaaaatata      1620
     aaactgtatt tgcgaaagac aaatacgata tcggcacagt aaaggattat gaggcaagaa      1680
     ttgaattaat agtagacaaa tattgcagta aaagaccata caggtgttca atagaagata      1740
     aaaaggaaat agaaacacaa gtggcaaagc tattagaaaa gaatctaatt gaagaatcct      1800
     acagtccatt tgcggcacca gtgacacttg catataaaag agatgaagga aaaaaaaatc      1860
     gcctgtgcat tgatttcaga gacctaaaca agaatatagt accacaagct caaccatttc      1920
     cacttataga cgatctaata attaaaacta gaaactgtaa atatttcaca acactagata      1980
     taaactccgc cttttggtca atcccactcc gaatcgaaga caaaaaaaag actggtttcg      2040
     taacgcaaga aggacactat caatggacgt gtttaccatt tggtcttaaa acgtcaccgg      2100
     caatattcca aagaatcctg agcaacatat taaggaaaca taaattaaca gaatttacaa      2160
     taaattatat cgacgatata ttaatttact caacaaattt tgaagaacac atcagacata      2220
     tagagcaggt attagaagca attataagag aaggatttag actgaaattc aaaaaatgtt      2280
     cattcgctgc gaattcaata aaatacttag gacacatcat agaagataac acagtaagac      2340
     caataaaaga taatctaatt tcaatccaga attttccaac tccgaaaact caaaaaaata      2400
     tcagacaatt tttgggaaag atcaattttt accatgaata cataccaaat agctcaataa      2460
     cgctaaatcc attacataga ttattaaaaa aagatataga atttatatgg tcagaagaat      2520
     gtgagaaatc ttttacaaaa ataaagaaat tattatgtga tcaaccagtt ctagaaatat      2580
     tcgataagga tttgccaata aaaatttaca cagatgcatc gctagaagga attggagcaa      2640
     tactaaagca agtacaaata gatggacgag aaaaaccagt agcatatttc tcgaagaaat      2700
     tgaatgaggc tcaaaaaaga aaaaaagcaa tatatctgga gtgcctggca atcaaagaag      2760
     cagtgaaata ctggcaacat tggttaattg gaagaacgtt tgaagtatac tcagatcaca      2820
     aaccgcttga aaacctgaac ataaaggcga gaacggacga agaattaggt gaattaacgt      2880
     attacctgtc acaatataat ttcaaaataa aatatatacc gggtaaagat aacgctgaag      2940
     cggactgctt aagtcgaaat ccggtactag aaccgactga aaacactgaa gaggctctaa      3000
     caatagtaaa tatgacacaa atagacgaaa taagaacgga ccaagaaaag aacgaaataa      3060
     tacgaaaaat gaaaccaaaa ctaataaaaa agaatggaat attttataag aaagtaaaaa      3120
     ataaagagaa aataatcttg tcagaagaat tgagcatcaa attgatgaaa gacatacaca      3180
     gggaatggtg ccatacaggc attagacaaa ctatgaacag gatatgtccc tactatacat      3240
     caaagaatct gacagaaaat attaaaaaaa tgtgtaagaa ttgcgacata tgtataaaaa      3300
     ataaaacaag aggccaaagc aaatttggat taatgtctca cttgggacca gcgactgaac      3360
     catatgaaat aatgtctata gacaccatcg gaggatttgg aggacgaaga tcaacaaaaa      3420
     aatacctcca cttattggtc gaccattaca cgagatacgc atttattcta acctcaaaga      3480
     cacaaaacgc cacagatttc atcaaattac gtcaaaaacg tgttagaaac agataaaatt      3540
     gggatgattc taacggatca atatccggga ataaattcaa caaaatttaa agaaattcta      3600
     aaaaaaaaga acgttaaact gatatttaca gcagttaatg cgccgttctc gaatggtctt      3660
     aacgagagac taaatcagac tctagttaat aaaataagat gtaaaataaa tgaaaaagaa      3720
     ggaaaaaaag cttggacaac ggttgctaga gaatgtgtag ataaatataa caagatagaa      3780
     cactcagtca ctggttttgc accagagtac ttattaaatg gcatagacac aagtgtcata      3840
     ccagaagaac taaaaagaaa gagaaacaaa gatagattgg accagggata agaaaattag      3900
     ctttaggaaa ggtcaataca atcacataat tataataaaa aactgtatga caaaaataga      3960
     aaacatcagg agtacaatgc aagagacatg gtatatatag aaaacggaaa caaattaaac      4020
     aggaaaaaac tagaccatct gagaattgga ccattcgaaa taataaaaaa aatatcaaac      4080
     tccctatacc aaatcagaac taataagaag aaatcagaaa cgagtatatt ccatatatca      4140
     aaactaatac caacagaaaa agaagacaca gaagaagaag aagaagaata aataacatat      4200
     ccaacataaa agcaccccaa caagtcgtac cctggggggg gaagatgtaa agaaagtata      4260
     ctttctttaa                                                             4270
//
ID   Gypsy-25_LH-LTR repbase;    DNA;    INV; 346 BP.
XX
AC   ADOQ01005476;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_LH_;
KW   Gypsy-25_LH-I; Gypsy-25_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-346
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01005476; Positions   15996   15651.
XX
SQ   Sequence 346 BP; 113 A; 53 C; 77 G; 103 T; 0 other;
     tgcgaattgg ccgcgcttct catgctccgc gcgtcttctg attgattacc gttggatgga        60
     gcgatatgta cgatcacgag gatgattgta aatagacacg gacacacagt tggagagaga       120
     cagatagtca ttacggaata aagcacacgt gcaatttacg gataattaaa gttaagagta       180
     aattaagtag tgtgaataga gaagcggtaa ttgtaaactt taattgtcgt ttctttgttt       240
     acaggtaaga ttgtaaatag tgtaaataac aatcgttaag tagtgaataa aattctcctc       300
     tttgtttaca gagaaacaca ctttggttga aaatttaccc cgtaca                      346
//
ID   Gypsy-25_LMi-I repbase;    DNA;    INV; 5889 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5889
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..1520,1460..2884,2854..3159,3117..3434,
FT                 3362..4462,4405..4788,4743..5495)
FT                 /product="Gypsy-25_LMi-I_1p"
FT                 /translation="MDSGFVSPPKCNLTRDSSAGEVLSSTPRFPSAPANAA
FT                 EFLRLNSXQQNATAFERPPVTYHSAPVEPRVQDTFFATPGVNNVCNRVHEG
FT                 ASNVYDXNFSVPASVGNVLNTNNAAAGVQTPNRQQCNIHPPRQWDPSTRLP
FT                 THDVASEALHANPFHQFYNMSPQFLQNPSPANRDNSLAQTVVRRLENMPTL
FT                 PPFKPAHPEFWFNLVEQTFNVYGLDDDARFYCLVNHLHERVELIYDLVKNP
FT                 PSTGKYTAAKQTILQRVSKTRRENVRQLIYEERLGDRSPSQLWRCLRLLVS
FT                 EHDLPNDTLTEIWTEKLPLPVQTAISAYEDRSVNELLRAADRVHSARLREL
FT                 RASASRPSNTRSVKSVALPAPSSRRSDGASDAAEDHGSQLPPPPAMTYCFF
FT                 HYRFGEQARNCKPPCSYPNYNRRIWRASTQLQTTVLLPKLQSQVGSGATSC
FT                 KLNERHPTLHSVSHATRNHGRVYVKDLSSGTNFLVDTGADVSLLPARLANR
FT                 KIHRQKTTLRAVNASHLQCTGLTSFNVTLAPKCELEWRFLVAQVEEPIIGI
FT                 DFLRHYKITIDLASDRVFYPACNLYISCXPASVLTKDKDNVRLATKSANLP
FT                 GESLEWSNKWLAERIESTNHELHRRLQDLSSELSSVREQLNSLQASCPPSV
FT                 LQVSQCSSDPAPARNCDRDSSTCNCVCARPHSDSVITSATPPSRLPGQSNF
FT                 RAQASVNNSQQSAVSMRPLLPSASPAAPSATITQCTNSTQRGSPVCNSLPT
FT                 GSWQSCKLSTPAPQLRSEADTLAPIQTVPSHTAPRVALVTNGTVHRLRLID
FT                 GPPISCRPRRLKPELMPVAREQIDELIKGGIIEPSSGCWSSPIHFVAKKDG
FT                 TWRMVGDYTKLNSRTIIDKYPVPNVADFNHALAGAGVSRPRFGRRRCFSVI
FT                 DCKRAYHQIPMAPEDVEKTAITTPFGLFQYRFMPFGLRNAAQTWQRFINEV
FT                 LFHLDFCFVYLDDILIFSPTVEKNKEHLQMLRTLSLQLVGTFADVKDTLAA
FT                 AGVELNNKKLQLHKPSVLFLGYVVSAEGLTPPADKVKPVLELPRPDTYKEL
FT                 RRFIGTVNYYRKHLPAAAEVQAPSQMPWQAKTLPASGRFRGPQGSGTLTDA
FT                 LAGQNTTGIRPVPWTPVMETAFEKLKHLLANAVTVAHPHPDATLFITTDAS
FT                 DSAIGAVLSQTVGDATSPLQFFSKKLNNAQKKYSAFDRELLAVYEAVKHFR
FT                 TEVEGRGFYILTDHKPLVAAIQKPPSDPPPRRFRHLDYVLQFTSDVRYIKG
FT                 ADNVVADFLSRVGAVTSVLDLSDLPQLQSADPDIMQLISDHGSSLKPVKTT
FT                 FPGVTGEVWCDESTGSLRPFIPKDLQRQVFDKLHSLAHPGVRASTRLVTER
FT                 FVWRDMRRDCQAWARSCIPCQQNKVSRHTSPPLGTFSQPHRRFQHLHIDLV
FT                 GPLTPSEGFRYVLSVIDRTTRWVEATPLPNITSETVARAFIDTWIARFGCP
FT                 ACDRCSCLYRHLDSTLRLPCVLTTDQGRQFESALFSDICRLCGISKIHTTA
FT                 YHPQSNGLVERWHRTLKTALRCHGPLWTEALPFVLLGLRTTFKEDLKGSVA
FT                 EFVYGQPLVLPGELVAPTPWLRLRAPPWTSCPHAVASPSSSSLVERVKLHC
FT                 SKLHPQPPARHTPPRTYVPVALSSCAYVFLRDDTVKAPLQPPYTGPHKVLR
FT                 RAANTMDILLHGSKTTVSLNRVKPALVEPASDDSPTPSPPPSSNDSGNRSH
FT                 SSSQPLTHSSSNYPSGGPQHSSQPSDPHPFRGFSPRMTPSSQNFTLSTPSS
FT                 CTSSLRPSGQNCVHIGPPHLFPLAVCLPQPLLPHPPRMHHPPYVGVLPPPL
FT                 AAVRLPPCYRGNWVDQIISVTSAC"
XX
SQ   Sequence 5889 BP; 1344 A; 1820 C; 1297 G; 1424 T; 4 other;
     ttggtgaccc cgatcaagtg tcgctttcga gttaccgccc gaagtgcttt ccatccgcgt        60
     ctaccgcgat attcgcgctc ccgcgttcgc atgccgccta ttgtccgtac tgtgcacaat       120
     ggcttcacct aacggacctc cgccgcccgg attctgccgt cccgtgagtg tgcctccacc       180
     tgccgaatac cgacgaggac agcaaatttc ttacagctcc gggaattgct actccgtgtg       240
     caagcttcgt cagtataccc gtgcctacta tggactccgg ctttgttagc ccgccaaaat       300
     gcaatcttac aagggacagc agtgctggag aggttctctc ctctacgccg aggtttcctt       360
     ccgctcccgc taatgcagcg gaatttttaa ggctgaactc tastcaacag aacgctacgg       420
     catttgaaag gccgcccgtt acatatcact ccgcgcctgt tgaacctcgt gtgcaggaca       480
     cctttttcgc cacaccgggt gtaaacaacg tgtgtaatag agttcatgag ggtgcctcga       540
     acgtttacga ccmtaacttc agtgttcctg cgtcggtcgg aaatgttttg aacacgaaca       600
     atgcggcagc cggcgttcaa actcctaatc gtcagcagtg caatattcat ccgccacgcc       660
     aatgggaccc atctacccga cttccgacac acgatgttgc ctctgaggct ctgcacgcga       720
     acccttttca ccaattttat aatatgtcgc cgcagtttct ccagaatcca tcgcctgcta       780
     acagggacaa ttcgctcgca cagactgttg ttcgacggtt ggagaacatg cccacgctac       840
     ctcctttcaa acctgctcac ccagagtttt ggtttaactt ggtagagcaa actttcaatg       900
     tttacgggct tgacgacgac gcgcgttttt actgccttgt gaaccatctc cacgagcgcg       960
     tcgaattaat ctacgacctt gtcaagaacc ctccctcgac agggaagtac acggcagcca      1020
     agcagacgat tctgcaacgt gtgtccaaaa caaggagaga gaatgtcaga caactaatat      1080
     atgaagaacg tctcggcgac aggtctccat cacagttgtg gcgatgcctc cgtttacttg      1140
     tcagcgaaca cgacttgcca aacgatacac tcaccgagat ttggacagag aaactgcctc      1200
     tgcctgtaca gactgcaatc tccgcgtacg aggacaggtc agttaacgaa ctcttacgcg      1260
     ccgccgatag agtccattct gcccggctac gcgaactccg cgccagcgct tctagaccgt      1320
     ctaatacaag atctgtcaag tcagttgctc taccggcacc ttcatctcga cgcagcgacg      1380
     gcgcttctga cgccgcggaa gatcatgggt cgcagcttcc tccgccccca gcaatgacat      1440
     actgtttctt ccattataga tttggagagc aagcacgcaa ttgcaaacca ccgtgctcct      1500
     acccaaacta caatcgcagg taggcagcgg cgcaacctcc tgcaaactaa acgagcgcca      1560
     cccaacttta cattctgtgt cacacgccac tagaaaccat ggccgggtgt acgtgaaaga      1620
     tctctcctct ggaacaaatt ttctagtgga caccggagcc gacgtgtcac tgctccctgc      1680
     tcgcctcgct aacaggaaga ttcaccggca gaagactaca cttcgagcag tcaacgcatc      1740
     gcatctccag tgcaccggcc taacctcttt taatgtcacc ctcgccccca agtgcgagtt      1800
     agagtggaga tttttagttg ctcaagtcga agaacctata ataggtatag attttcttag      1860
     gcattacaaa ataacaatag atttagcaag cgatcgcgtg ttctatccgg cgtgcaactt      1920
     gtatatttct tgtgkgcctg ccagtgttct aactaaggac aaagataacg ttcgcctagc      1980
     taccaaaagc gctaatctcc ccggcgagtc tctcgagtgg tcaaacaagt ggctcgcaga      2040
     gcgaatcgaa tctacgaatc acgaacttca tcgtcggctg caggatttaa gctcagagct      2100
     gtcatctgtc cgcgaacagc tcaacagtct tcaagcatcc tgcccgcctt cagtactaca      2160
     ggttagtcag tgttctagtg atcctgcgcc cgcgcgcaac tgtgacaggg attcctctac      2220
     ctgtaactgc gtttgcgctc gtcctcattc tgacagtgtt attacgagtg ctaccccgcc      2280
     ttcccgccta cccggacagt caaatttccg cgcgcaggct agtgtcaata actcacagca      2340
     atcagctgtt tctatgcgcc cgctgctgcc ctcagcctcg ccagcggcgc cttccgcaac      2400
     tattactcag tgtaccaact caacccaacg cggctcgcct gtttgcaact ctctacctac      2460
     gggcagttgg caatcgtgta aactctcgac gccagcgccg cagcttcgct cggaggccga      2520
     tacgctcgcg cctatacaaa ctgttccctc gcacacggcg ccccgcgttg ccttagtgac      2580
     taacggaact gttcatagac tacgcctgat tgacggaccg cctatttcgt gccgccctcg      2640
     tcgtctcaaa cccgaactta tgcccgttgc tcgcgaacag atcgacgaac taataaaagg      2700
     tggaattatt gaaccctctt cgggatgttg gtcgagtccg attcatttcg tcgcaaagaa      2760
     agacggcact tggcgcatgg taggagacta tacgaagctt aattctcgta ccatcatcga      2820
     caaatatccc gtccccaacg tggcagactt taaccacgct ttggccggcg ccggtgtttc      2880
     tcggtgatag actgtaaacg cgcctatcac cagatcccta tggccccgga ggacgtagaa      2940
     aaaacggcaa tcaccacacc tttcggactg ttccaataca gattcatgcc tttcgggttg      3000
     cggaatgctg ctcaaacctg gcaaaggttt atcaacgagg tgctcttcca cttagacttt      3060
     tgtttcgtct acctcgatga tattttgatt ttcagcccca ctgtggaaaa gaataaggaa      3120
     catttgcaga tgttaaggac actctcgctg cagctggtgt agaacttaat aataagaagc      3180
     tgcaacttca caaaccttca gttctgtttt tgggatacgt tgtttcagct gagggcctca      3240
     caccccctgc tgacaaggtc aaacctgttt tagaattgcc acgacctgac acttataaag      3300
     agttgcgtcg tttcatagga acagttaact attataggaa gcacttgcca gctgctgctg      3360
     aggttcaggc accctcacag atgccttggc aggccaaaac actaccggca tccggccggt      3420
     tccgtggacc ccagtaatgg aaacagcctt cgagaaactg aagcatctat tagcaaatgc      3480
     tgtaactgts gcccacccgc atccggatgc caccctgttt attaccacag atgcaagtga      3540
     cagtgctata ggtgctgttt tgagtcaaac tgtcggagac gctacatccc ccctccagtt      3600
     cttctcaaag aagctgaaca acgcgcaaaa gaaatattct gcctttgaca gagagctgct      3660
     ggctgtctat gaggcagtga aacattttcg cacggaagtt gagggacgtg gcttttatat      3720
     cctcacggat cataaacccc ttgtggccgc catccagaaa cctccgtctg accctccgcc      3780
     acgacgcttc cgtcatcttg attacgtcct acaatttaca agcgacgtca gatacattaa      3840
     aggtgcagac aatgttgtag cagatttcct gtcccgtgtc ggagctgtca cttcggttct      3900
     cgacctatca gacctcccgc agctgcagtc agctgaccca gacataatgc agctcatctc      3960
     tgaccacggc tcttccctta aacctgtcaa aactactttc ccaggcgtga ccggagaagt      4020
     gtggtgtgac gaatctaccg gttctctgcg acctttcatt cccaaggacc tacagagaca      4080
     agtttttgac aaactgcaca gcctagccca tcctggagtg cgagcctcca ccagacttgt      4140
     tactgagcgt tttgtgtggc gtgacatgcg acgcgattgc caggcctggg cccgatcgtg      4200
     cattccatgt cagcaaaaca aagtttccag gcacacctcg cccccgctgg gcactttctc      4260
     ccaaccacac agacgcttcc aacacctaca catagacttg gtaggcccac tcactccttc      4320
     tgaggggttc agatacgtac tctccgtcat agataggact acacgttggg tcgaagccac      4380
     cccactcccg aacatcactt ctgagaccgt tgctcgtgcc tttatagaca cttggatagc      4440
     acgcttcggc tgccctgcgt gttgacaacc gatcaggggc gccaattcga gtccgctctg      4500
     ttttctgaca tttgtaggtt gtgcggcatt tccaagatcc atacaactgc ctaccatcct      4560
     cagagcaacg gactcgtcga gagatggcat aggactctta aaactgccct acgctgccat      4620
     ggccctcttt ggactgaggc cctgcccttc gtacttctcg ggttacgcac cacttttaaa      4680
     gaggacctaa aaggctcagt agctgagttt gtctatggtc agccccttgt tctgccaggt      4740
     gaactagttg cccccacgcc gtggcttcgc cttcgagctc ctccctggta gagcgcgtca      4800
     aactacattg tagcaaactt cacccacaac ctccggcacg ccacacacca cctcgcactt      4860
     atgtacccgt tgcacttagt tcgtgcgcat atgttttcct gcgtgacgac accgttaagg      4920
     ccccccttca gccgccttat actggtcctc acaaggtgct ccgtcgtgcg gcaaacacca      4980
     tggacattct cctgcacggt tccaaaacta ccgtttcact gaaccgagtg aaaccggctc      5040
     tagttgagcc cgcttccgat gactctccca caccctcacc cccaccctct tcgaacgact      5100
     caggcaatcg gagtcattct tcttcacaac ccctcaccca ttcttcgagc aactaccctt      5160
     ccggtggtcc acaacattcg agtcagccct ctgatcccca tcctttccga ggattttcac      5220
     ctcgcatgac tccctcctca caaaacttca ccctttcaac cccttcttcc tgcacaagtt      5280
     cgttgcgccc atcagggcaa aattgtgtcc acatcggtcc tccacacctg tttcccctgg      5340
     ccgtttgcct gccacaacca ctcctaccac acccgcctcg gatgcatcac cctccttatg      5400
     tcggggtttt gccaccccca ctcgcagccg tacgcctccc tccctgctac cgaggtaatt      5460
     gggttgacca gatcatatct gtaacctcag cgtgttagtg cagggtgttt cagtgttctc      5520
     tgctcgcgtg tgacgaaaaa gtgatcaggc aggtggtgta gtgcaacgtg tggttcgacg      5580
     catcaagctc ccacctcgcc tccgcaggca atctacgtgc gttcgtcgcc cgaacggaac      5640
     gtcattgtgc ggttcccagc tgaccatcga ggccccccac aacaatcgca agattcggac      5700
     gtcggcttcg cccaccatcc accctcgagg acttcgagac taccgtgccg ggtttcgccc      5760
     cacggtcacc caccaaccgc cccctacctg aggatgcaca agagctgcca gtcacctttc      5820
     tgcatcccct accagctgtg taatttaatc ttttattttt tctgtactcc atactgccgg      5880
     ggggggcta                                                              5889
//
ID   Gypsy-25_LMi-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-193
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 193 BP; 54 A; 38 C; 44 G; 54 T; 3 other;
     tgtggggatc gataccwaac aacwttggac aagtgtagta tctttstgtg ttacgaaagg        60
     tctttgctgt aaggaagcgg aaacaccagt tcccgcctga caattgtaca gtgtaaacgt       120
     gttataataa agtcagtgta tgaaagttgg agtgtctcgt gtcttatccg acccgatcct       180
     ataaacctcc aca                                                          193
//
ID   Gypsy-25_MoPha-I repbase;    DNA;    INV; 4077 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4077
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1104-1104 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..987
FT                 /product="Gypsy-25_MoPha-I_1p"
FT                 /translation="MIAVADILEQPPTIGKYETLKATLIERFSDSLEKQMR
FT                 TLLDATELGDKAPSVLLREMRTLAGTNVTDSMLRTLWLQRLPPRIQELLAV
FT                 LDEVSLDKLAACADKAHDRGAGHGTIATTSVSQPDSMQTLNNQISKLTKSV
FT                 AAIGKRRARSRSRGKTNKRSNSQDKVKDTSQTTCYYHRHFGEKAWKCLLPC
FT                 DSKHPLAKRENSSSRRQ"
FT   CDS           858..4064
FT                 /product="Gypsy-25_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SKGYITNYMLLSSAFRRKSLEMPTPMRLETSLSQTGK
FT                 LQQPPAIGAVSDGYNQRRLHVKDQNSGLRFLVDTGADISLLPKKAIDRKAK
FT                 QSALQLYAANGLPIKTYGERILTLNLGLKRSLTWTFCVANVSTPIMGADFL
FT                 YHYNLSVNLRKRNIQDNITGMECKGQLISKSHTTISTIRPDSHFYKLLAEF
FT                 PGLTKPSQPPTVKSHGVAHHIITKGPPVAQPFRRLPPEKLKIAKAEFTYLI
FT                 EAGICRPSSSPWASPLHLVPKKTTGVWRPCGDYRGLNAITVPDKYPLPHIH
FT                 DFTHGLHGRNIFSTIDLVKAYYNIPLAEEDILKTAVITPFGLFEFIAMPFG
FT                 LKNAAQTFQRYMNSIFQDLDYVYCYVDDILIASKTPEQHVQHLQEVFKRLQ
FT                 NAGVTINTSKCTFGKEQVDFLGYRISNQGIEPLPEKIKAIANYPKPKTIVE
FT                 LRRFLGMLNYYRRCIKNAAHDQAILNEYLKNSKKNDKRPIIWTEPANRAFD
FT                 KCIQSLSESTMLTHPQEDAPLVLTTDASDTAIGATLEQIVEGKPQPLMFFS
FT                 KKLNSAQRNYSTYDRELLAIYQAIKYVKDLVQGRQLTIRTDHKPLIFAFQQ
FT                 KANKASPRQIRQLDLISQITTDIIYLRGEHNVAADALSRIAAIECPVIVST
FT                 EELAEKQQHDEELKEILDGKTNLKLRQFTLPNSPHPIYCECTEEAIKPYIP
FT                 EALRKRIFNTVHNMAHPSGRSTRHQIRQKFVWPNMNKDITYWVKTCLPCQR
FT                 AKVHRHIKHIPDKIAIPDERFNQVHLDIIGPLPIVSNYRYCLTMMDRYTRW
FT                 PEAVPLVEATAESVAKAFFSAWISRFGAPRIITTDQGTQFEAELFRVLTNL
FT                 IGCKRTRTSPYHPASNGILERWHRTLKSALSCHLQNDQDWMTALPTVLLGL
FT                 RTAFKDDLKCSTAELLYGTTLRVPGEFFEDPEQPVKPEIFVQELRERIRKI
FT                 RAKPVAHHCSPKPFVHQDLKIATHVFLRDDTVRRPIQPPYQGPYEVLAKIN
FT                 EKLYTVLVNGRPCNISTERLKPAYLPTEETENATNLTDAAPPPPIRTYTSA
FT                 KKTNKRVTFQEN"
XX
SQ   Sequence 4077 BP; 1411 A; 956 C; 768 G; 941 T; 1 other;
     ttaaatggtg accgcgacga aagtaattcg aatgagataa cgattgacac gaacatcttt        60
     tctcgcctca aaaaattttg caagtaaaca tgccggtcga ccattcgccc aagcamgcct       120
     cgggaagtga aaaatcgggt aatacctctc caggggacaa gcaaactacg gaggatatgc       180
     aagataacat aatctacacc cgttgaaatt caagcaaatg aatttcgcaa cgtgaaattg       240
     gctgcattct ggcgaaatcg gccaaaatta tggttcgcgg ccattgaatg cgaatttact       300
     gcctaccgca tacgctcaga cgagatcaaa tatagtgcag tcgtcagaca tcttgacgaa       360
     cattcgatga ttgcagtagc cgacatcctg gaacaaccgc caacgatagg taaatatgaa       420
     acacttaaag ccacactaat agaacgtttt tcagattccc tcgaaaaaca aatgcggaca       480
     ttgctcgatg ccacggaatt gggtgacaag gccccttccg ttttattaag ggaaatgcgt       540
     acgctggcag gcacaaacgt taccgatagc atgttaagga cgttatggct tcaaagactc       600
     cctcccagaa tccaagaatt gttagctgtg ttagatgagg taagccttga caaactcgca       660
     gcttgtgccg ataaagcaca cgacagagga gcaggacacg gcaccatagc tacaacaagt       720
     gtctcgcagc cggactctat gcagacttta aacaatcaaa tcagtaaact cactaagtcc       780
     gtagccgcta taggaaaaag aagagcacgt tctagatcta gaggcaaaac aaataagaga       840
     tccaacagcc aagataaagt aaaggataca tcacaaacta catgttatta tcatcggcat       900
     ttcggcgaaa aagcttggaa atgcctactc ccatgcgact cgaaacatcc cttagccaaa       960
     cgggaaaact ccagcagccg ccggcaatag gagccgtatc cgacggttat aatcagcgca      1020
     ggctccatgt caaggaccaa aatagtggat tacgtttctt ggtagacacc ggtgcagaca      1080
     tctcgttgtt gccaaagaaa gctatagaca ggaaagcaaa acaatcagca ttacaactgt      1140
     acgcagctaa cgggctaccc attaagacct acggagagag aatactcaca cttaacctag      1200
     gtttgaaacg gtcgcttaca tggacatttt gcgtagccaa tgtatcaaca ccaataatgg      1260
     gagctgattt cttgtaccac tataacttgt cagttaacct tcgcaaaaga aacatccagg      1320
     acaacatcac aggaatggag tgcaagggac aattaatttc aaaatcccac acaacaattt      1380
     ccacaatcag accggattca catttttaca aattactcgc tgaatttcca ggattaacga      1440
     agccatcaca acctcctaca gttaaatcac acggagtggc acatcatatt atcaccaaag      1500
     gacctccagt ggcacaacct ttccgtaggc taccaccaga gaaactaaag atagcgaaag      1560
     ccgagtttac atatctcatc gaagcaggaa tttgcagacc ctccagcagt ccttgggcct      1620
     caccgttaca tcttgttccg aaaaagacaa ctggagtttg gcgcccatgt ggcgattatc      1680
     gcggattaaa tgccattaca gtacctgaca aatacccgct acctcatatc cacgatttta      1740
     cgcacggtct gcatggcaga aatattttct ctaccatcga cttagtaaaa gcatactata      1800
     atatcccatt ggccgaagag gacatactaa aaaccgccgt tatcacacca tttggcttgt      1860
     ttgaatttat agcaatgcct tttggactca aaaacgcggc gcaaactttc cagcgctata      1920
     tgaattccat ctttcaagac ctggattatg tatactgcta cgtggatgat atcctcattg      1980
     catcaaaaac accagagcaa catgttcaac atctacaaga agtttttaaa agactacaaa      2040
     atgcaggagt tactattaat acttccaaat gcacctttgg gaaagaacaa gtcgactttt      2100
     tgggttatcg gatatctaac caaggaattg aacccttacc tgaaaagata aaagctattg      2160
     ccaactatcc aaaacctaaa accatcgttg aactacgcag gttcttaggt atgttaaact      2220
     attatagaag atgcattaaa aacgcagcgc atgatcaagc catccttaat gaatacctga      2280
     aaaatagtaa aaagaatgat aaaagaccaa ttatctggac tgaaccagca aacagggctt      2340
     tcgacaagtg tatacaaagc ttgtcagagt ctacaatgct cacacaccct caagaggatg      2400
     caccgctagt tctcacgact gatgcttcag atacagccat tggagctaca ctggaacaaa      2460
     tagtggaagg aaaaccacag ccattaatgt ttttctccaa aaaactcaat agtgctcaac      2520
     gaaattatag cacgtacgat cgtgaattac tagctatata tcaagcaatc aaatatgtta      2580
     aagatttagt gcaaggaaga caactaacta ttcgcacaga tcataagcct ttgatttttg      2640
     ccttccaaca aaaagctaat aaagcatcac ctaggcaaat cagacaacta gatctcatca      2700
     gccagataac cacagacatc atttatctac gaggagaaca caatgttgca gcagacgcac      2760
     tttcacgaat tgcagcaata gaatgcccag tgatcgtctc cacagaagaa ctagctgaaa      2820
     aacaacaaca cgatgaagaa ttgaaagaaa tcttggacgg aaaaacaaac ttaaagttac      2880
     gacaatttac tttgcccaac tcaccacatc caatatactg cgagtgtacc gaggaagcaa      2940
     tcaaacccta cattccagaa gctttacgca aaaggatttt taataccgtc cacaacatgg      3000
     cacatccaag cggaagatca acacgacacc agatccgtca aaagttcgtg tggcctaata      3060
     tgaacaaaga tattacatac tgggtgaaaa catgcctccc atgtcaaagg gccaaggttc      3120
     atcggcatat caaacacatc cccgacaaaa tcgcaattcc ggatgaaaga ttcaatcagg      3180
     tacatttaga catcattgga cccttaccta tagttagtaa ttacaggtat tgtctcacta      3240
     tgatggaccg atacaccaga tggccagaag cagttccact tgttgaagca acggccgaat      3300
     ctgttgcaaa agcctttttc tcagcgtgga tttcaaggtt tggcgctcca agaattatca      3360
     caactgacca gggtactcag tttgaagcag agctttttag agtcctaact aatctcatag      3420
     gatgcaaacg aacgagaact tcaccatatc atcccgcctc taatggcata ttagagcgtt      3480
     ggcaccgcac tctgaagtcc gccctctcat gtcacctcca aaacgatcag gactggatga      3540
     cagctttacc aacagtactt ttaggtttac gcacagcttt caaagacgat ttaaaatgtt      3600
     ctacagcaga gctactatat ggaacaacgt taagagttcc aggagaattt tttgaagacc      3660
     cggagcagcc agttaagccc gaaatcttcg tccaagaact aagagaaaga attagaaaaa      3720
     ttcgagccaa accagtcgca catcactgtt ctccaaaacc gtttgtacac caggatctaa      3780
     aaatagcaac acatgttttt cttagagatg atacagtaag acgccccata caaccacctt      3840
     accaaggacc gtatgaagta ttggctaaaa ttaatgaaaa attatatact gttctagtta      3900
     acggaagacc atgcaatatt tcaacagaaa gactaaaacc ggcatatcta cctaccgagg      3960
     aaactgaaaa cgcaacaaat ttgacagacg ctgcaccacc accaccaatt cgtacttaca      4020
     catctgcaaa aaagacgaat aaacgagtaa cattccaaga aaattaggag ggagtgt         4077
//
ID   Gypsy-25_MoPha-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1189-1189 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 224 BP; 70 A; 40 C; 50 G; 63 T; 1 other;
     tgtggcgttg cagcgctcaa tcaacttgtc cacgggcctg attggccaag gcgaaatccc        60
     cctagaaaga gwatagatag agtagctagt cttgagtttc agtagtaggt tttaagtaag       120
     gcgagttaaa agaaatcttc tgtaacaata ttcacgaata aagtaagaag taaagtgttt       180
     tatgaaaatc cattcgtttt gtcttaccct gcgaatacgc taca                        224
//
ID   Gypsy-25_MSe-I repbase;    DNA;    INV; 4068 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4068
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 902-902 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4068 BP; 1060 A; 1048 C; 938 G; 1022 T; 0 other;
     ttggtgaccc cgaggaagac gcaataatga gcgacagtag tgattccagc aaaactgtcg        60
     aatcacgtcg tggtggcgaa cacgacaacg tcacccgtcg tgccagaaga gtgcacgagt       120
     cgacggatcg tccttcatat gaccttccgg tgaaattgaa ggtaccaaaa ttttctccgg       180
     acgagcccga aatttggttt gctttattgg agggacagtt tgataattat ggcattactg       240
     acgatgcttc aaaattttcc aacgtcctca gcaacttgga catcacaact gccaaagagg       300
     taaaggacat cattactaat cctccactta ggaataagta ccaaaaactt aaaaacgagc       360
     ttattaggcg tttgaccgcc tcaatagaaa agaaaatgag acaggtcctg actcatgagc       420
     aactaggaga ccggaaacca tcacaatttc ttcggcatct tcaggacttg gctggcccaa       480
     atttcccgga tgattttttg aggaccattt ggtgtgaccg tttgcccaga gatattcaaa       540
     cggttctggc atcccaaaca tctcagtcat tggagcaact agcggaatta gctgatcgag       600
     tccaggatct aactgtgcct gccaaagttg cgtcagcttc aacatgcacg tgttcctcca       660
     gcggcaattt ttcaaatgaa atcgcagaac ttaagctgat ggtggcaaga ttggaagcga       720
     agctagaaga ccgctctcgt gttcctccac ttcctgatcg atctagacca cggcgtcggc       780
     gatcttcatc ccgaagtagg acgcggtcga cgtccagtta tcgtcgttct ccgatctgct       840
     ggtaccatat caactttgga accaaggcgc gaagatgtat acagccgtgc gattacaagc       900
     cagcgggaaa tgccatgggc agtcgataat ggcgactgac gattgccccg tttccccggg       960
     tcgcctcttt gtaccagacc gccacacaaa aacgcagttt ttggtcgaca caggtagcga      1020
     cctctgcgtt ttccccaggc gtctgctgcg cgaacgtcga gcacctacga gctacgaact      1080
     catcgcagcc aacgggacga ccatcaagac ttacggctac gcggacctga atcttgacct      1140
     aggacttcgt cgtgtttatc cttggcgatt cgtggttgcg gatgtgacta gacctattat      1200
     aggagtagac tttttgtgcc attataattt aattgttgat tgtaaaacca aaaattaatt      1260
     gataatacga caacattatc tgctccagct tcgttagcta ttggttgtag cgtatattcg      1320
     gtaaaggttt tgactggtga ttcaccttac catcatttac tttcacagga atttcctgaa      1380
     attatgcaac cagctggtac acatcgcaca gtactacaca acacacagca ccacattcgc      1440
     acaacaccag gtcccccggt ttcatgttct cccagacgct tagctccaga caagctgaag      1500
     gtggctaagg gggagttcca ggccatgtta aacaatggta ccgcacggcc ttcagagagc      1560
     ccgtggtcat cacctctaca ccttgcgccg aaaaggataa tggctggcga ccctgtggtg      1620
     actatcgaca gctgaatgct cgaacaatac cagataaata tccagtacgt catatccatg      1680
     acttcgcaca aaatattgct ggttgtagga tttttagcac gattgatcta gtgaaggcct      1740
     acaaccaaat acctgtgtgc gaggaggata taccgaaaac ggctattacc acccctttcg      1800
     gtatgttcga attcccgtac atgacgttcg gtctgcggaa tgcggcccaa acattccagc      1860
     gtttcgtcga cgagatgatg cgtggactgg atttcgtcta ctgctatctc gatgactttc      1920
     tcatcttcag cagggacgaa gcggagcacg agaagcatat acgtcaagtg ttctcgcgat      1980
     taaaaaatta cggaatggtt attaatccgt ccaaatgtgt ttttggtgtg tcggaagtta      2040
     cctttttagg gtatcgaatt tcggcgagtg gaaccaaacc tttggacgag aaggttcaag      2100
     ccattcgcaa tttccccgta ccaaataatg tcagagcatt gaggaggttt ttaggcatgg      2160
     taaatttcta ccggcgtttt ttgccgcatg ccgctggaac ccagtctcct ctcaacgctc      2220
     tccttatggg tgcagtcaag ggttctacac ctatcaccct atcgggcgag gctttgaagg      2280
     ctttcactga tactaaggaa agcctatcaa acgcagcttt acttgcacat ccggactgca      2340
     atttgaaact agctttggtc acggatgcgt cggacgtggc catcggagct gtattacaac      2400
     agctgcagga cagtgcatgg cgtccgctag cattcttctc ccataagctg agctcgtcgc      2460
     aacaaaagta ttccccgtat gaccgggagc ttctcgcgat ttacaaggct atcaaatatt      2520
     ttagacatat gctcgaggcg agagacttca cggtctacac cgaccataag ccgatcagct      2580
     atgctttcac tgagaggaaa cataattgtt ctcccaggca gtaccggcag ttggacttta      2640
     tttcccagtt cacgaccgat ataaggcaca tctctggcaa agacaatgtc gtggccgatg      2700
     ccttatctcg aatcgacgag ctgggcgctc cagtcgacct agccgaactg gccaagtccc      2760
     aagaatccga ctctgaattg gtccagtacc tggatggcaa ttcatctctt cgcctctcca      2820
     agttacaact acctgggagt tgtatatctt tgtactgtga tatcagtaca ccaaccccta      2880
     gaccctttgt aacacgaaaa tttcgcaagc aggtattcca cagtctacac tccttaagcc      2940
     atcctggcgc taccgctaca gcaaaattag tagctgaacg ttttgtatgg ccaggcgtca      3000
     ggagagactg tcgggagtgg tctcgtactt gtttgtcatg tcagcgtgct aaagttacga      3060
     ggcatgtgtc gacaccttta gtcaaatttg acttgccacg tgcacgtttc aaacacgtgc      3120
     acatagacct tgtgggaccc cttcctgtat ctcaaggaca ccgttactgt ctcactgcga      3180
     tcgaccggtt cactcgttgg ccagaagtaa tgccaataca ggacatcaca gcggagacgg      3240
     tagccaaggc cctattatct ggttggatat cccgatttgg atgccccgag catattgtaa      3300
     cagaccgtgg acgacaattt gagtccgccc tgttccaata tttggggaaa attgctgggt      3360
     ttcaacacaa gcgcaccaca gcttaccatc cggcgtgtaa cggcatagtg gaacgcttgc      3420
     atcgacagct aaaggcagct atcacggccc atgctagtca gaactggacc gaagttttgc      3480
     cttgggtact gctgggtatt cgtagcgctt ttaaagagga cctgcagaca tcttcagccg      3540
     aattggtgta cggagagccg ctaaggctcc ccggcgaatt tttcgatcct agcacgccgt      3600
     gtacatccga cgtatcagat tttacggctc gtttgcgctc gtttgccaat aagcttaagc      3660
     cagtaccaac ctctcaccat actaagccaa aaatttttat ttataaagat ctggtttccg      3720
     ccaaatacgt ctttttacgt gaagatgctt cccgcacccc tctgcaacca gcgtacacag      3780
     gaccgtacaa agtcctagaa cgaacggaca aggtttataa actcctcgtg aaaggaaaac      3840
     cggtcaccgt cacaatagac cgtcttaaac ccgcctatgt gataagtgac cagcaggggt      3900
     taccggcaga accatctgtg ccatacacac ccattacgcc ggtcccgaac accattgtca      3960
     cgcatgatac aacaccacgg gacaaggcag tgccagtaac tacacgttct ggacgacggg      4020
     tccatttccc agatttttat cgcccctaac caggtctctg gggagtca                   4068
//
ID   Gypsy-25_MSe-LTR repbase;    DNA;    INV; 494 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-494
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 951-951 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 494 BP; 123 A; 118 C; 107 G; 146 T; 0 other;
     tgtgagcact cacctgcatt gaatgcacgg agaatgaaac attgacacga atgactcagc        60
     tggttgtttt gtgaacaatg tgatgacgcg ttacgcactg cgacatagcg gtgcgcacga       120
     gtgtgtgtag tatcggcacg cacccgaggt gcgtagatcg agggcacgaa tacccccgaa       180
     gcaaccgacg acgaaaaaaa taggaatgac cagtatgatc ctacgtgtga caatatacgc       240
     ttcaacgcaa ttagcactcg ctcgtgaacg caatagtttt gtgatccgtt ctgtatttag       300
     tttagtgtta ttttctcgtg ttttctactt ctacctgtga actgtcttaa tctgtcgctt       360
     acaacccttc tgacttttcc ttcttagtgt gtgtgtggaa caatatactg tgtgaactac       420
     ctgtgaactt ttacttctct gctatatcct gttacgcctc acgcttactg ccacttgcca       480
     catacaacgc taca                                                         494
//
ID   Gypsy-25_OrIn-I repbase;    DNA;    INV; 9651 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-9651
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1566-1566 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           866..2950
FT                 /product="Gypsy-25_OrIn-I_1p"
FT                 /note="gag."
FT                 /translation="MSGDPKKSTGFSSADITFSGISERINSGKTSWVYSLS
FT                 RERLLGVCIQLKLIKSPTAKVXDCRKLLAKFIKHRGLSFAVPSVSGVSSAG
FT                 SVLPVVGDTVKHIRSGEAAVVEQGVDFVPLNSGSEFADSEEGDCLVPVKVE
FT                 QNQEEGASFDLGILQDGAGARSSTPYTKVSEDLEGDTTQFTLEKSVSTLEN
FT                 TITTLLETQEKTNSGLTAFIASQTEKNLQLRSLIDSYSEIETPASDQNQSL
FT                 NPFIGLGENLGGGNNSYLENPQTSNPFANTGENSLSVPGNTSVLPVQNHIV
FT                 QERGEEIAEMAEGPRRIPKYIMPTYRGTEDENIETFFTKYENLARINNWTV
FT                 ADKIDHFPFSLAGLAEQEWEAGIWDGFTWEEIKQRFLRSFGNPNKGMVLEA
FT                 KIQGAQQRSDEGPVTYMRRIRQWCRQLDPQMPDVKIITNVIRGLREDVLPL
FT                 IEASKIATVVDLETRLLDFEAVKGVAKERLRQKQQIREDIEEIISAKLAGT
FT                 KLNTCSIDADSRGRSEYRNTGGGKDSSERSRYYSRSPSTDRYRGNSGGRER
FT                 DYGGDKRGDSYGRGNSRDNRGDNSRGYRGEDSRERWESKRRYNYNSRNGGY
FT                 HRWGSDGNGAARQKEYGGNSSMGGGKTQKLEWEPKSILKEGVRFQDERVYG
FT                 GDGIRCFHCMERGHILRVCPRLAGRARCFQCGEIGHISKFCNNPKN"
FT   CDS           3288..6593
FT                 /product="Gypsy-25_OrIn-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="IWSKSGLWGKRIVFGKLDGVVITFDGKMKNNRFSLKY
FT                 DEYIPPRESREVEITEIDLKQNVNLLDILSPASTPLGKSIHIEDKLVGLRV
FT                 NSIKLFNYGVTTQRLLSGTVLGEVKRDIIETIKNRHVLEIKSMAYEKRAQP
FT                 PGIPPDVKVSETFDVGPDEKTLVALGTQKTSGNNKPILVDRRGVQIDINPS
FT                 LSDAEYLKIYNLVKQYEDLFTTKAVDLGKTELIPYKINLIDREPVAFAPYR
FT                 LSKMEREVLDEKVKELLQAGIIIPSASPYSAPAFLVKKPDNGGYRMVINYK
FT                 KLNEKILTDKFPLPRIDTIFDSLQGSSYFSKIDANNAFFQQPIDTSTSEVT
FT                 AFVTSSGLYQFTTLPQGLKNSPASFQRAMNRLFNNIMYRHVLCYLDDLVVF
FT                 GSDFEKHLISLRLTLDKIRSVNLKLSTTKCKFGYQEIELLGHKLSGSGISP
FT                 LPDKAEAIAQLKRPTSQKGIRSFLGMCSYYRRFIPQYAIIAAPLTDLTKKG
FT                 NEIFEWNEELDLAFNTLKGKLMASPVLAHYDDNKEVFIATDASKIGIGGSL
FT                 SQKDENGGLHPVFYLSRKLKQVETRYSVSEIELLSVVYCLNYWRPYVLGKR
FT                 VIIYNDHVSLKYFSNFKNSSSRLYRLSLQLIDYDFEIKHKSGKTPMIRVVD
FT                 HLSRNPMDMEVGDICEGGMEIDSLELRGVEQPTIMMMRQINVGLEQKKDPF
FT                 CLEIYNALTDPEAATAQARRKSRKYFIGEEDDVLYFKHYLNKESIGLLVIP
FT                 SSLIEDIIKAYHDDLPAGGHLGIDKTLSKIKNKYYWPAMTADVTQYIKSCN
FT                 SCQRNKLSREAPAGNLQPIVPQSSPWSHIIIDFLGPLNHSSGSYSYIIVGT
FT                 CTTTRFAIAKATKRADSGAATLFLDEIICRFGCPQILSSDRGTHFIEKTFK
FT                 EYVKSLGIKQRQSTAYAPQSQGLTERFNSTLLNMLTHYTTNHTDWVKHLGH
FT                 VMLSYNASVQSSTNFSPFYLMHGFEPRMPIDLAFLPTSVNSDVLTNISKLQ
FT                 EVRTQIPQILQKAQARQKKYYDKKHKSVEYNDGDLVLIRQFSQISDKPAKL
FT                 DDKYIGPYMVLKRAGPVTYEIRMLKNGRWTDEIVNIRRMKLYNSR"
XX
SQ   Sequence 9651 BP; 3056 A; 1309 C; 2371 G; 2912 T; 3 other;
     agtggtggag gcgccgtttc ttcgaacttt tgtctcgaag tgatccgcgc tctgaggtcc        60
     ctaaaatagt gttttgttta ataatttttt ttaaggggat ttcgaggttt ttgggtgttt       120
     tgttttggga tttaggtact agagtagtgc atggtttagt tttaaggttt gttgcatgtt       180
     ttattttaag gggatttctc ctggtttggc atttgacagt ttgaaatttt tttttatwga       240
     taagttttgt ttttgggttg gtactttttt tttgggtttc atctgggtgc tttagagaaa       300
     taagtgcctt gcggatattc cgattttcgg ttttccgttc gctgaccgtt gaggggaggt       360
     tcttattttg agcctccggc gtagcacgaa tttcttttca atatttttct tttttttgtt       420
     tttgtttttc tttcttcttt tttggttggt ttgggtgctt tggagaaata agtgccttgc       480
     gggtattccg attttcggtt ttccgttcgc tgaccgttga ggggaggttc ttattttgag       540
     cctccggcgt agcacgaatt tctttttggt atttttcttt ttttgtttct gtttcgcgtt       600
     acccgtgcct tgcggatatt ccgtgatctg cggttttccg ttcgctaacc agtttgggga       660
     gacccttatt tagagtctcc ggcgtagcgc gggtgtcgtg gacaattgta gtttgctggg       720
     ggattttaat taactgagga aatttatttt ggggatttgg ggtgagaaca taatacattt       780
     cagctggggt tttaatgagt ttacggggtt ttaattttat cattttcttt taatatcttt       840
     tattttagta gtatcatttt ctttcatgtc tggtgatccg aagaagagta ctggtttcag       900
     ttcggctgac ataacgtttt cgggtatatc agagcggata aattcgggga aaacctcttg       960
     ggtgtatagt ttgtcgaggg aacggttgct tggagtttgt attcagctta aattaataaa      1020
     gtcgcctacc gctaaggtcg amgattgtcg aaaattgttg gcgaaattta ttaaacatcg      1080
     ggggctttca ttcgcagttc cgtcagtttc tggggttagt tcggcgggct cggtgttgcc      1140
     ggtggtaggt gatacggtaa aacatattcg gtcaggggag gcggctgttg ttgagcaggg      1200
     agtagatttc gtaccactaa actccgggtc agagtttgcg gactccgagg agggggattg      1260
     tctagttccg gttaaagtag agcaaaatca agaggagggc gcgtcatttg acctgggaat      1320
     attgcaagac ggcgcagggg cgcgttcgtc cacgccatat acgaaagttt cggaggattt      1380
     agaaggggac accactcagt ttactttaga aaaatcagta tccacactag aaaacacgat      1440
     aactactttg ttggagacac aagaaaaaac gaattccggt ttgacggctt tcattgcctc      1500
     gcaaactgaa aaaaatttgc agttacgttc attaatagac tcgtactcgg aaattgaaac      1560
     accggcatca gatcagaacc aatcgttaaa tccttttatc gggttaggtg aaaatttagg      1620
     aggaggtaac aatagctatc tagaaaaccc acagactagt aacccgttcg cgaacacagg      1680
     ggagaattcg ttgtctgttc ccggaaatac gtctgtttta ccagttcaaa atcacatagt      1740
     acaagaaagg ggggaagaaa tagcagagat ggcagagggc ccgagaagga ttccgaaata      1800
     catcatgccg acttatcggg ggacggaaga tgaaaatata gaaacctttt ttacgaagta      1860
     cgaaaaccta gccaggataa ataattggac ggtcgcggat aaaatagatc acttcccttt      1920
     tagtttagcg ggattagcgg aacaagaatg ggaggcagga atatgggacg gtttcacttg      1980
     ggaggaaatt aagcaaagat tcttaagatc atttggaaat cctaacaaag ggatggtgtt      2040
     agaagcaaaa atccaggggg cacaacaacg atctgatgag ggtccggtta catatatgag      2100
     gagaattagg cagtggtgcc ggcagttgga cccacaaatg ccggatgtta agatcattac      2160
     aaacgtcata aggggtttga gggaagatgt gttacccctg atcgaggcga gcaaaatagc      2220
     taccgtggtc gatctggaaa cgaggctgct ggattttgag gcggtaaaag gggtagcgaa      2280
     ggaaagattg aggcagaaac aacaaattag ggaagatata gaagaaataa tatccgctaa      2340
     attggccggg acaaaactga acacttgctc cattgatgcg gactcacggg gaaggtccga      2400
     atatagaaac actgggggcg gaaaagacag ttcagagagg agccgttatt attcccgaag      2460
     tccgtccaca gacaggtata gggggaattc tgggggccga gagagggatt atgggggaga      2520
     taaacgaggg gattcatatg gaaggggtaa ttcgcgggat aatagagggg ataattcgcg      2580
     tggttacaga ggggaagatt cgcgagaaag gtgggaatcg aaaagaaggt ataattataa      2640
     ttcgcgaaat gggggatacc accgttgggg gtcagatggt aacggagccg ccagacagaa      2700
     agagtatggt ggaaatagtt caatgggggg tggaaaaacc caaaaattag aatgggagcc      2760
     gaaatcaata ttgaaagaag gggttaggtt tcaagatgaa agggtttatg ggggagatgg      2820
     aattcgttgt tttcattgta tggaaagagg acacattttg cgggtatgtc cgcggctagc      2880
     agggcgggct cgctgttttc aatgtgggga aataggtcac attagtaaat tctgtaacaa      2940
     tccaaaaaac taaagagtga acgtcgtgtg aattttcaaa tttgcatggc gtctatgaga      3000
     atacacccat ctttgtctat agatttactg gtaaataatt ctttgataag ttgtttattt      3060
     gacacgggca gtaatatttc agcaattagt gcaaatttgg ttgaaaacag cggatataac      3120
     ataagacaat acggggggac agctacgtcg gcgaatcaaa ctttgttaga aataataggt      3180
     aatacagtag ttagcataag attaggtagt aagtcggtta gttatacgtt atttgtggtt      3240
     aaacaactca atcaccctgt aatattagga actgactttt tccataaata tggagtaaga      3300
     gtggactttg gggaaaaaga atagtttttg gtaagttgga tggagtggtc attacgtttg      3360
     atgggaaaat gaagaataac agatttagtt taaaatatga tgaatatata cctcctagag      3420
     agagtaggga agtagaaatt actgaaatag atttaaagca aaatgtaaat ttgttagata      3480
     tattgtcacc cgcttccaca cccttgggga agtcgattca tatagaggat aaattggtag      3540
     gattaagagt aaatagcata aaattgttca attacggggt tactacgcaa agactgttga      3600
     gtgggaccgt gttaggagaa gttaaaaggg acataataga gacaataaaa aataggcatg      3660
     tgttagaaat aaagtcaatg gcctacgaaa aacgtgccca accccccggg ataccaccag      3720
     atgtgaaggt gtcggagaca tttgacgtgg gtccggacga aaaaacactt gtcgcgttgg      3780
     ggacccagaa aacatcggga aacaataaac ctatcttggt ggacagaagg ggcgttcaaa      3840
     tagacataaa tccatcactt tctgacgcgg agtacttgaa aatttataat ttagttaaac      3900
     aatatgaaga tttgtttact actaaggcgg tggatttagg taaaacagaa ttaataccat      3960
     ataaaattaa tttaatagat cgagagccag tagccttcgc tccttatcga ctttctaaga      4020
     tggaaagaga ggtattggat gagaaggtga aagagttatt gcaggcggga ataattatac      4080
     cttcggcgtc tccgtatagt gctcctgcgt ttctagtgaa gaaaccagac aatggaggct      4140
     accgaatggt gatcaattat aagaagttga atgaaaaaat tttgaccgat aaatttcctt      4200
     tacccagaat agatacgatt tttgattcct tacaaggatc atcttatttt tccaagatag      4260
     acgcaaacaa tgcatttttt caacaaccaa tagatacaag tacaagcgag gtgactgcgt      4320
     ttgtgacgag tagtgggctt taccaattta ctactttgcc gcaagggtta aagaatagcc      4380
     ccgcgagttt tcaacgggca atgaatcgct tatttaacaa cattatgtac cgtcatgtgt      4440
     tatgttatct ggatgattta gtggttttcg gatcggattt cgagaaacat ttgattagtc      4500
     tacggctaac tcttgataaa attaggagtg taaacttgaa attgtcaact acaaagtgta      4560
     aatttggata tcaggaaata gaactgttag gacataaact ttcgggcagc ggaatcagcc      4620
     ctttacccga caaagcggaa gcgatagctc aattaaagcg gccaactagt cagaagggaa      4680
     ttaggtcatt tttagggatg tgcagttatt ataggagatt tataccacaa tatgcaatta      4740
     tagcggcccc actcacagat cttacgaaaa aggggaatga aatatttgaa tggaatgaag      4800
     aattagattt ggcgtttaat actttaaaag gtaaattgat ggcttcacca gttcttgcac      4860
     attacgatga taacaaggaa gtatttatag cgacagacgc gagtaaaata gggatcgggg      4920
     gttcactaag tcagaaagac gaaaatgggg gtttacatcc agtgttctat ctaagtagaa      4980
     aattaaaaca ggtggaaact agatatagtg tctccgaaat agagctttta agtgtggtat      5040
     attgtttgaa ttattggaga ccttatgtac tgggaaagag ggtaataatt tataacgacc      5100
     atgtgagttt aaaatatttt tcaaatttta agaattcctc ttctagatta tatagattgt      5160
     cattgcagct gatagattac gattttgaaa taaaacataa atctggaaaa acccctatga      5220
     taagagtagt ggaccattta tcgagaaatc ctatggacat ggaagtgggc gacatatgtg      5280
     aggggggaat ggaaatagat tcattggagt taaggggggt agaacagcca accattatga      5340
     tgatgagaca aataaatgta gggttagaac aaaagaaaga tcctttttgc ctagaaattt      5400
     ataatgcatt aacagatccg gaggcggcga cggcgcaggc taggaggaag agtagaaaat      5460
     actttattgg ggaggaagac gatgtattat attttaaaca ttatttaaat aaagaaagta      5520
     ttgggttatt ggttattcca tccagcttga ttgaggacat aattaaggca tatcatgatg      5580
     acttacccgc tggcggacat ttgggtatag ataaaacgtt gtcaaaaatt aaaaataaat      5640
     attactggcc tgcgatgact gcggacgtaa cgcagtatat aaagagttgt aactcatgcc      5700
     agagaaataa attaagtagg gaagcgccgg cgggaaattt acagccaata gttccccaga      5760
     gttcaccttg gagtcatata ataattgatt ttttaggacc tttaaaccac tcgagtggtt      5820
     catattcata cataatagta ggtacttgca ccaccacgcg attcgcgata gccaaggcta      5880
     ccaagcgcgc ggattctgga gccgccacgc tatttttgga cgagataatc tgccgttttg      5940
     ggtgtcccca aatattaagt agtgataggg gtacccattt tattgaaaaa acttttaaag      6000
     aatatgtaaa atcactgggg attaaacaaa ggcaaagtac ggcatacgca cctcaaagtc      6060
     agggtctaac ggagagattt aatagtacgc tattaaatat gctgacccat tataccacca      6120
     atcacaccga ctgggtgaaa catttgggac atgtaatgtt aagctataat gcaagtgtgc      6180
     aatcgagtac taattttagc cccttttatc tcatgcatgg gttcgaacct agaatgccga      6240
     tagatttggc atttttaccc acctcagtta actcggatgt gttgacgaat atatccaagt      6300
     tgcaagaggt tcgtacccaa ataccacaaa ttctgcaaaa ggcgcaggca cgccaaaaga      6360
     agtactatga taaaaaacat aaatccgtgg aatataacga cggggatttg gtattgatac      6420
     gtcaattttc gcaaatttca gacaaaccgg cgaaattaga cgacaaatat attgggccat      6480
     atatggtact taaaagggcg gggcctgtta catacgaaat caggatgtta aaaaatggaa      6540
     ggtggacaga cgaaatagtg aatattagga gaatgaaatt gtataattca cgttaattcg      6600
     cgatactttt gatgttcacc ttagaaattt ttcttttcca aaatggcggg gtggagtagg      6660
     atctaagtgt gaggtaggag ttttcaaata gagaaaatgt tgttgagaaa atgggaggcc      6720
     tcctgtttga aaaagtgtgt gaagtgtaaa aggaagtatg atagtttagg ttaaggttag      6780
     cgcacgtacg agggaaggcg gataacgact tttgaccgtc cttttgaaag ggtgtcggat      6840
     ggaatggtac gactagatcg gcattgagcg ggtaatcagc ggataaagga gttgaagtct      6900
     tctcgcgctg gagattgaga gcgtattttt gagaggtttt gagatttttg agtatttttg      6960
     agaggttttg agatttttga gtatttttga gaggttttga gatttttgag tatttttgag      7020
     aggttttgag atttttgagt atttttgaga ggttttgaga tttttgagta tttttgagag      7080
     gttttgagat ttgagagaga gattttgagt tatgagtatt tgagggcgtt ctattttaaa      7140
     gcgttaactt gagggcttta ttaggcgtca tgtgggaaaa ttcgcgggca acaatggttg      7200
     ttgttaacct gagaacaaca atggttgttg ttaattggag gagaaaactg gaagggatgt      7260
     tgctagtttg agagcaaaaa aggattggat gttgttaatt tgagaacaac aatggttttg      7320
     tgtatgtatc ctattatctg agaataggta cccattatct gagaatgggt tatcgtaccc      7380
     agcgagtttc gaaattactc gaggcgccct atacgtatcc gcgtgcgtag gcgataagtg      7440
     agaactacat cgtggtcccg ggaccacagt ataaatgaga aatttggagt gaatgggatt      7500
     tgattaactt tccttggaaa atgaaaatga ataaatagac agtcatgctg aagtggaaat      7560
     ttcttttaag agttgtttag ctgcataggt taattgggta gtagttaaga taaggggttc      7620
     cgtcgtttga taatgttaag aaaaaaaaaa aagagaggat atagttgtgc ttacgaatgt      7680
     gatatgtggg gatattttgg aaagtgcatg gttgcataga tgagagtttt tgaaggtatg      7740
     ttttgaaagt gcgtggtggc atmgataaga tttttcgaaa aaaatagaag ggtcaacaca      7800
     aaaaaagaga gaagaggttg aaagtaggaa accataaatt gagtgataga tgctgggttt      7860
     aagataaaaa aaaaaagggg tagaggttga aagtgggaaa acgtaaacaa aaaaaaaaat      7920
     cctcaagatg gaatggtaag cacaatttca agtggggacg gattcatagg acggaactcc      7980
     gtagatataa tgatttcgag taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      8040
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaatct gagaatttaa gatgatgatc      8100
     tgagaatttg agaatttaag aatttgtgaa tttttgggaa tttgaagatt cggattgttt      8160
     taagtaatta gaattttagg aatgagttta gaattttatt atacgcaata acaaaaggga      8220
     cactttggga ttaatcggga gtaggaattt gaaaacaaaa gaaggataaa atggacaaat      8280
     ggtttacgaa gtaaatgaga tgagagtaaa gcaattttga gacttcaaca tggaaaaatt      8340
     cagaaaggag gggcaatcca aactccagga tgcaatcagg atggtccgaa gggtatgtac      8400
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      8460
     aaaaaaaaaa aaaaaaaaag gaataagata taaataagaa aatgtctata atgtagttta      8520
     ttttagaaat tttggcaaga tggtaaatgt taatgaagga gaggaacagc atgacggaga      8580
     ggttttccgg ggattcaacg gtcgaatggg cccgaatcac cccaaaccag ttggatacga      8640
     cgggaagacg agataacaat acactgtgca gctttcccag ggccaacggt cgcgccgtga      8700
     tcggcgatcg aacttcgttc aagaccttca ttaaagactt taatttacct ttttgtttaa      8760
     ttttgttgta gctaagttct tttataattt cgtttactta atttaatgtc atttagaatg      8820
     gtatataccc ccgtaaagta aggtgaaatt gtaatttgga atgtaatttg taattggtag      8880
     ttctgagcga gttttgggac tttgaaaatc tttgaaagaa tttttgaaag aatttttttt      8940
     tggaagtaag gtgaaatttg taatttggaa tttggaattt gtaatttgta atttgtagtt      9000
     ctgggtgagt cttggggctc acaattttta tttttgtatg tacactttaa tactttgtag      9060
     ttttaagtgc ttatttttgt atgtaaactt taatactttg tagttttaag tgcttatttt      9120
     tgtatgtaaa ctttgatact ttgtagtttt aagtgctttt ttttttagta gaattttttt      9180
     ttgtagatgt tagttggttt agttaatctt ttggtacaat ttttattatg tatttttttt      9240
     tacgcaagaa taattttgtc tattcaagat actgtattat cttttttttg catgtaacct      9300
     ttaatagttt gtagttttga gtgcttattt tttttatagg tttttttttg tagatgttag      9360
     ttggttaagt taatcttttg atacaatttt tgttatgtat ttttttttta gcatgagtaa      9420
     ttttgtattt tcaagatact gtgttatctt tttgggttgg atttgtgttg ccaatgttat      9480
     ttttttttag gttgtcttct tgatggtact tggggatatt aggactgtgg tttcggaact      9540
     ggttttcaaa ataacgagtt taaatttttt tttgtacaag tgggcatttt taagagtcac      9600
     gggccttacc cctgacaccg aggacggtgt ctaactggag cgggggaagg a               9651
//
ID   Gypsy-25_OrIn-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-490
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1532-1532 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 490 BP; 176 A; 80 C; 107 G; 127 T; 0 other;
     tgtaacaaag ggacaggagt taggataggc aaatcggctt agcacgtctc tgggagtagc        60
     atttttgata agacacccca gtatccacat gaagagagaa acgggggtaa aggtatcttt       120
     aaccctatgg tttcatatgt acaatatcgg agggggtagt cctccctaaa aaggaggggg       180
     gaagagttaa accagagaga ttaagactaa gactcggggc cattctgacc ctgcatcttg       240
     gagtgactgg acgtgaagcc cgaatattaa ttaaggtaaa attaaagaat attccgaaac       300
     catttgtcca tatatccata atagctaagg ttaggataaa taattagtgt gtattttaat       360
     ataatataat caataaatgg tatttagact gtagagtatt attattcatt atacgcccct       420
     aattaagtaa cgaaagagga aataacatca tcctccgggg aaaatagaat aaaataaacc       480
     ccccgttaca                                                              490
//
ID   Gypsy-25_PBa-I repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   17-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-25_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-423
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 721-721 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
SQ   Sequence 423 BP; 112 A; 152 C; 94 G; 64 T; 1 other;
     aattggtgac cgccgacgtg atctgaacac gcaacacacg caacacatgc acccatcgaa        60
     acacagacac gcaacgcaac cgctgccttc kgccacgtga ctctccttgg ccaatcatcg       120
     gacgcactcg acttgccgag gtctcgcaca catctccctg tcgacgtcca tacggccagc       180
     ccacatcgca accggtacag acagccaatc actggacacc cctcgacttt cgaggttacg       240
     ctcacaacct cactgtcgat gtccaaatgg ctcgcccacg caacggagaa gcaactagcg       300
     cacaagagtc gcagcggcaa catgccctcc tcacatcgcg catcacatat ctccctgggc       360
     agacacaccg gacaacgggc acacagagaa gaatccggag cttgtccact aaggggggag       420
     tcc                                                                     423
//
ID   Gypsy-25_PBa-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   18-MAY-2012 (Rel. 19.03, Created)
DT   03-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-25_PBa-LTR.
XX
NM   Gypsy-25_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-202
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 722-722 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 202 BP; 55 A; 69 C; 40 G; 38 T; 0 other;
     tgtggcggtc ccccgctcac acaactaata cctagcagaa acatacacga aaaagcaccg        60
     tggcccgcat ggcgcagtgg tagcgctcga gactcataca cctgaggacc taggttcgaa       120
     tcccaccgcg gccaacatct tttttccgtc atcaaaattc ttcatatcgt ggacaacgct       180
     cctccaacac caagccgcca ca                                                202
//
ID   Gypsy-25_SI-I repbase;    DNA;    INV; 4136 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_SI_;
KW   Gypsy-25_SI-LTR; Gypsy-25_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4136
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 440-440 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [1485-2018] - Reverse transcriptase
CC   Positions [3126-3602] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..1793
FT                 /product="Gypsy-25_SI-I_2p"
FT                 /translation="MVPGVGYGKRLFVKNAEQWGCSVSGVAGVQPPGELDF
FT                 SRPEIWPKWLKQFERYLSVSNAVSRGDKEKIDILCYVMGEKSEGILSQIMP
FT                 DLNAETSYKAVKAKFNGYFAPKKNIVFERYKFNSRVQQADESVDSFVTALY
FT                 TLAETCEFGELKEDLIRDRVVIGIRDTRVSERMQLAADLKISKALKMARQA
FT                 EIQAKEGRKIREELASLQLAEVNRITNKRREHANADVRGSREGGKCGKCGL
FT                 PRHMEAQRCPAVGSRCRKCSRTGYWERACKTKPTSKVDRVEEGEDEEENEE
FT                 EAAFIGAVSGKDSGSKFMFKIYVYELEKSFNFVIDSGADVTCIPLNDVPGN
FT                 CKNKIRPSKKIILGPDGKRLALLGYVDTNIKAKAGKAKARVYVIKNLKSCL
FT                 LGKPEIRRLDLIKIINSLSKINDQGAEEFTERFPKVFKGIGQFDKPLEIQL
FT                 KENASPYFQSVPRTVAIPLRNKVKKKLDRLKKAGIITPVDFPTDWCTPIVV
FT                 VQKKNGTSVRVCGDYTKLNNSVKRSNFPIQKVDVALANLKRKKYFSKLDAE
FT                 SGFYQIKLDEKSKKLTHLLRRSDDSCLRAYRSV"
FT   CDS           1867..2934
FT                 /product="Gypsy-25_SI-I_1p"
FT                 /translation="MDDVLIHTETKVKHLELLNTIFKRLEKAGITLNKNKC
FT                 VFCVNKIEFLGHIISQKGIKVHPSRVSAILNYTPNNKKSLMQFLGMVNYVN
FT                 KFIPKKSEILEPLNALLKEDVPFTWTDIQQRAFQKIKKLLTQAPTLAFFDY
FT                 KKKILIQADASSYGLGAALIQIDNNENREIVAYASKSLTESEKKFSQIEKE
FT                 ALALTYACDHFKEYILGIKIILETDHKPLLQILQTKPVDDLIPRLQRMRLR
FT                 LMKYNYKVEYVRGKQLVLADCLSRTPEVLAEDYGNDLSEEIEGYIRFVISN
FT                 LPASKDMLSRIKQEQQSDRICQTLIKYCLKGWPEKNNLAEDYYPTSLIKII
FT                 FRIPKTICCTILD"
XX
SQ   Sequence 4136 BP; 1476 A; 749 C; 959 G; 947 T; 5 other;
     cgacgcccga ggtgaagcac ktgtttattt ctctcgcgac ccgatcccat tacatggtgc        60
     caggtgtggg gtacggaaaa agactattcg tgaaaaatgc cgaacaatgg ggatgtagtg       120
     ttagtggagt tgcgggagta caacctccgg gcgagctgga tttttcgagg cccgaaatat       180
     ggccaaaatg gctcaagcaa ttcgagaggt atctatcggt gtcaaacgcg gtatccagag       240
     gagataaaga gaagatcgac atactttgct atgtgatggg ggagaaatca gagggaattt       300
     tgtctcaaat catgcccgat ttgaacgcag agacgtcata caaagccgtc aaagccaaat       360
     ttaatggata tttcgcccca aaaaagaaca tagtgttcga aaggtacaaa tttaattcaa       420
     gagtgcaaca ggccgacgag agcgtagatt cttttgtcac agcgctatat acgctagcag       480
     aaacctgtga gtttggagaa ttgaaggagg accttatccg cgacagagta gtcataggaa       540
     ttcgcgacac acgggtctcg gaacgaatgc aacttgcagc agacctaaag ataagcaagg       600
     ctttaaaaat ggctcgtcag gccgagattc aagcgaaaga aggcagaaaa ataagagaag       660
     agttagcaag tttacaacta gcggaagtga acagaatcac caataagaga agagagcatg       720
     ccaacgccga cgtgagggga agccgcgaag gcgggaagtg cggaaagtgc gggctgccga       780
     ggcacatgga ggcccagagg tgtccggcag tcggctccag atgtcgcaaa tgtagcagga       840
     caggatactg ggaacgtgca tgcaagacaa agccgactag caaagtagac agagtggaag       900
     aaggagaaga tgaggaggag aacgaagaag aggcagcctt catcggtgca gtaagcggaa       960
     aagacagcgg aagcaagttt atgtttaaga tctatgtata tgagttagaa aaaagcttca      1020
     attttgtaat cgactcaggc gcggacgtaa catgcattcc tttaaacgac gtgccgggaa      1080
     actgtaaaaa caaaatacgc ccaagtaaga aaataattct gggaccggac ggaaagaggt      1140
     tagcattgtt aggttatgta gatacaaata taaaagcaaa agccggtaaa gctaaagcaa      1200
     gagtttacgt tataaagaat ttaaaaagct gcttgctagg taagccagaa ataagaaggc      1260
     tggatttgat aaagattata aacagtttga gcaaaataaa cgatcaaggg gcagaggaat      1320
     ttaccgagag atttccgaaa gtatttaaag gtataggtca gttcgataag ccgttggaga      1380
     ttcagttaaa agaaaatgca agcccctatt ttcagtccgt tcccagaacc gtggcgattc      1440
     cgttgcgtaa caaagtcaaa aaaaaattag accgcttaaa aaaagcgggc attataaccc      1500
     cagtcgattt tccgacggat tggtgtaccc cgattgtagt cgtacagaag aaaaacggca      1560
     cgagcgtccg cgtgtgcggg gactacacaa aattaaataa tagcgtaaaa cgttcaaact      1620
     ttcctataca aaaagtcgat gtagcactag ctaatctgaa aagaaaaaaa tatttctcaa      1680
     agttagacgc ggaatccggg ttttatcaaa taaaattgga tgaaaaaagt aaaaaactaa      1740
     cacatttatt acgccgttcg gacgattcat gtttacgcgc ctaccgttcg gtataaactg      1800
     tgctccggac tatttttcca gcgattttca gaactatttc acgatttaga agatgttaca      1860
     atacacatgg acgacgtgtt gattcacaca gagaccaaag taaaacactt agaattacta      1920
     aacactattt tcaaaaggct cgaaaaagca ggtataaccc ttaacaaaaa caaatgcgtg      1980
     ttttgcgtga acaaaataga atttttaggg catataattt cgcagaaggg gattaaggtt      2040
     catccaagtc gagtttccgc gattttaaac tacacgccta ataataaaaa atcactaatg      2100
     caatttttgg gcatggttaa ttacgttaat aaattcattc caaagaaatc agagatctta      2160
     gaaccgttaa acgctctttt gaaagaggac gtgccattta cgtggacaga tattcagcag      2220
     cgagcttttc agaaaataaa aaaattatta acgcaagcgc caacattagc attctttgat      2280
     tacaaaaaga aaatattaat tcaagccgat gcatcgagtt acggactagg agcggcacta      2340
     attcaaatag ataataatga aaatcgtgaa atcgtggctt atgcttcaaa atcactcaca      2400
     gagtcagaga aaaaatttag tcaaatmgag aaagaagcat tagcgttaac atacgcttgc      2460
     gatcatttca aggaatatat tctcggcata aagataatac ttgagacaga ccataaaccc      2520
     ctactgcaaa ttttacaaac aaagccggtc gacgatctta tccctagact ccaaagaatg      2580
     cgtttgcggc ttatgaaata taattataaa gtagaatacg ttagaggtaa gcaattagtt      2640
     ttagcagatt gtctatcaag aacaccagaa gttctcgcgg aggactacgg aaacgatctc      2700
     tcagaagaga tagaaggata tatcagattt gtaataagca atcttcctgc atcaaaggat      2760
     atgctgagta gaattaaaca ggaacaacag agtgatcgca tctgtcaaac tctaattaag      2820
     tattgtttaa aaggatggcc ggagaaaaac aatttagcag aggattacta tcctacttcg      2880
     cttataaaga taatatttcg tataccgaaa actatctgtt gtacaattct agactagtaa      2940
     taccaccagc gttacaaaaa gaaatactta acaaaataca tgggggccat ctaggaataa      3000
     gcaaatgtag agctagagca agccaatcag tatggtggat tggtttaagc actcagttga      3060
     aaaatacagt acaatattgc cagaaatgta tagaacaaag agcgaatcac aaagaacctt      3120
     ttatgcagga agattttcct tcaagaccat ggcaaaaaat agggttagat ctcttcaaat      3180
     gtgaaaaatg gtacctgata atagtcgact actacagtag atttattgag atacacgcct      3240
     taaattattt aacgcagagg aaaattatag gaaagtgtcg cgaaawcttt gcgcgtttcg      3300
     gcattcccga agttgttagg tcggattgcg ggaaacagtt tgaatccgaa tttcaaaaat      3360
     ttgcaaagga attccagcac ataacgagct cacccaagta ccaacaaagc aacggtttag      3420
     cagaagccgc aatgaaaata gctaagggca ttataaaaaa atgcgacgat gtacacgagg      3480
     ggttgttggc gtacaggacg acaccgcttg agaatgggta cagcccagca gagttaatat      3540
     ttaatcggaa aatacggtct acacttccga ttcttccgtc taakctaaag tcattcaaag      3600
     accacaggga aataattcag cgggaaaaaa gaaacaagca gaaacaaatc gaagcataca      3660
     acaagcgtca ccgggcgagt aaattatcag atttaaatcc ttcagacgcg gtctggatca      3720
     tagacctacg tgtatgcgga gtcgtcctgc gacgtttgga aacacctcgt ttctaataaa      3780
     aacggaaacw ggttcaacgg taaaaagaaa tagatggcat ctagtgccgg cgccctataa      3840
     atcggaatca gggaaggaaa agcgtttgat gtcggagcgc cgacattttt cgaggaggag      3900
     agtggagacg caataccggg tgacgaccaa atagcggagg aacggagtgc gaatgatata      3960
     ggagccaatg cgttagccgg gaataacgaa gggggcaata gtcacacggg aaatgacgag      4020
     cgtatttgca gacctaggag aaactgcgga cctccgaagt tttacggcga agtggtctca      4080
     catggacctt gataactgta ttgaaactta taagaaactt attaataaaa gggaga          4136
//
ID   Gypsy-25_SI-LTR repbase;    DNA;    INV; 106 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_SI_;
KW   Gypsy-25_SI-I; Gypsy-25_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-106
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 441-441 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 106 BP; 20 A; 26 C; 42 G; 14 T; 4 other;
     tgttgtgggg gcgacatgcg gcgctgcggg cacgctcgcs gaatcgctag agatgctacc        60
     gatcccgaga gggagcmagg gggactcgcg gsgcaasatg gcgaca                      106
//
ID   Gypsy-25_SiCu-I repbase;    DNA;    INV; 9390 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-9390
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5048-5048 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           446..1561
FT                 /product="Gypsy-25_SiCu-I_1p"
FT                 /note="gag and zinc knuckle."
FT                 /translation="MSTGGGTGTGSAGSSTAGTGGGSGTGGGTAAGATPHA
FT                 GPVKVAIQPRRFGGEEHECSKEFLDLFEEAALCNRWTADICSLQFPNYLSG
FT                 TAAQWWRSFKNQRIRATPXGGAVVAPTWTEIKTAFQXAFTSVGNLVNAELK
FT                 LDARQQRVEESPESYVFAILALCDAVEPTMSEERRVRFLLRGMRDWYLTKI
FT                 MPLNPLTVDDVLTHMRRLSEMKRMTERYKEREVPMFPIEQESPILLQMKEM
FT                 VQLTQKLVEEIQEERKQLKAEKQIKNQRERQERTQGGLKCFRCDXIGHFAR
FT                 DCNRSMHERSNFRGNRFNAPRDGQRRVRFANPAHENHRWGLRQERMGEHRM
FT                 PIGEGNGRVGEPMDRTSTNIIGPQIHERL"
FT   CDS           1375..4935
FT                 /product="Gypsy-25_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="CTSRWTAKSAIRKPRPRESPVGIKTGKNGRTPNANRR
FT                 GKRTGWRTNGPNFNQHYRSXNTRTFIGHIGEGSVLEKDGRINGQMCKILFD
FT                 SGAGVNIVNSRFIRQKDIIEADKFVKLTGITDGRVEPLGKCTVQMQLNXML
FT                 CPAVEAYVINDARYDFIVGHGAMQKWGVCIDYKNNVLLINDEEARPEDDLW
FT                 ATICAVKEVKEXEVRNTETELKKMISVQLTQGEQELLLXTLRXHKEAFSFN
FT                 GELGCVRTEHCKITLKAXARPFKSVPYRVSWAERQTIKEQIKDLLEKGLIV
FT                 RSNSEYTSPILLVDKGHKGSDGVKNKPRLCTDLRKLNSMIHQDHYPLPHTQ
FT                 EVLDTVAGKQYFFSCDLKKGFWQLEMDKDSQKYLGFVCTEGCFNWTRLPFG
FT                 LSNASAIYQKVMEELYEEELFKSLLIFVDDIIGFGNTFDEFLGNVEVMLRK
FT                 CKEKGFKLSPEKCTFGEXEISCLGHRVGKEGIRPDPRKIEAIQKIQRPKTL
FT                 KQLRSFLGLTSFYRRYIEKYSQICKPLTHLLEKDTPLIWGRAQEAAMKELK
FT                 RRMCAAPILRPFDPSLPIVLHIDASKIGXGCVLLQEEKKQLRVVAYASRTL
FT                 SKTEQNYTVTEQEYLALIYALKTFRHYLHQQKFTVYTDHLNLLRMKFARNI
FT                 HAGRLLRWSLRLQDFNFTLIYRPGKDNQDCDALSRLPVNIKDQEEEDSALE
FT                 FPMYIISSEDHELLQEEDTYCKKIVERLNKHDKRAHRRFIIKEGRLYNIQE
FT                 GRLRYVVPRAAVPLLLKKLHGGGTAHLGFKKVYEQARERYFWDRMKRDILK
FT                 YVTRCETCLQYKHVTHKPYGFMQHLPVSERPFSFVCMDFVGPLVRSNKGNL
FT                 HMLVCVDSLSKFVIARAFPNANSEAVITFILENLICQGIVPETIHTDRAQV
FT                 FFSQGVKEICAKWSIRWSYTSGFMSRANGIAERAIQTIMSLIRCELEEAQE
FT                 DWDLKIPEVLFALNTSKSSSTGLDAYTILYGQSPRLXHLEDIIPASITKNT
FT                 PLTKEELLKLRRGVVNRIQRTREKYKERFDSKRQISPFXKDDXVYVKKMTM
FT                 KADENRKLAKKFEGPYRVLEVLGDNLVRVDMRGRKHAIVNVEKLRRAYKPA
FT                 SQDSGSEHDSLADRAWANTISDEDIPRAEXXQANNESENSSSSEGFLPPPP
FT                 PRRSVRIKFRPKWQRDYVTDESELSELD"
FT   CDS           7734..9311
FT                 /product="Gypsy-25_SiCu-I_4p"
FT                 /translation="MVRESDNHSPRPGHSNGTXSRSCSSGDYQNNHEAERK
FT                 GRETIEXNHHPHVNTRSHEGVERNHHPHVNTRRELTPEAMKKGKEIIILTL
FT                 TPEAMKDHEGGERNHHPHVNTRSREGGERNHHPHVXSRSHEGGERNHHPQI
FT                 DXRSRETTERYQNHQIGIRNQEMVGERQEENRNKNVAKYVGGLIKEAGKLL
FT                 EKAVFHLGRRVEHLDENIAKVTKQQKDDDTAVRGRVSVLEXAHKGFASEIE
FT                 GIQRSIESMRKXTTAEQQRITEGAKERVKLQXAGEKNKKKKAQSKLSKFRQ
FT                 KETVKRQRYNNLIAKQYEGVMTNINHVKTRPAPLNKKTVSKAIEMALDANK
FT                 TRSPEVKRKAGSPCAGDQKKPKQQEETNELXKKKTPTPSSSAEKPTTSREA
FT                 TRKEDPSTSDVLITNLNSDEDEFVSLSREIDLSETSSSGATCTSTNCSECS
FT                 SSEEEEQLTEDVKKQLEESKKRNQELERQLMGVLAAQPLPPMPVERGRRVR
FT                 NQARITSTPSSRQAEEMIQQDQQENDEDSE"
FT   CDS           5140..7392
FT                 /product="Gypsy-25_SiCu-I_3p"
FT                 /translation="MSKVXCLLALGLAVTNGRKIQMDIGMGVEIXEVKGAV
FT                 LYSASVPIFFRFPGVSYVSNAPFKCERLCHFDIENHKLIPQKTPGGEQIRS
FT                 GQRGCSVTHDVYEILQTNRYLLQHLESQDEARPEPDRFPRDADDENWEKKR
FT                 SERAALAEPLGSLLELITGNPSASTFRTMTAHVQYIDQFMKRLATMVQRKE
FT                 ASFITIGEAVSKVTKQTQDGFNYIQKEMRNITSVFNLLSTQYEDTDMNLLQ
FT                 LSLINGDLMQLQHGILTYLWMERSRDTCLAKKIPSLLISREDLAGQLGELR
FT                 KRLDAQGFRMAIPNYELDLYFKSNICDCIFEKRRGIVRVQVPIVPQQSDWK
FT                 LYRLQSNPYSYHGKVASISIPSTYVAVNGDEVLPFEQRDIENCQTNEGFLC
FT                 QLPRYGNKMSXANVCIKRLIKGETIETIQKICPMDFHEETEPDINEVGPRK
FT                 YVLTNAGSNRVVIECPGEVFPLEGPAIGSLNVELPCSCSLLIDSKRRDRDA
FT                 FPCVLPHLRIPVVNHSLPAIFVTKFXKVRIAAHSPILLPVDGNLSSVLDPT
FT                 VDIFDASKLIKAAEETEEELQAPIPEWFERQLDDSHIIIFVWLFVITGLII
FT                 YIILFYRPITTPVAAISMGSLLPRAQAKRSYSVDCVLPTHLEVLLWVYFAW
FT                 VVVFTVPFTLAFIRRQWEQFKLRRSLARTVKARHNSNVQNGLLSNGTNRRI
FT                 EDAEFQMNLREERVRRNQPQHMVYRPNTEANAQDETGRNPGPSSSSSMPAF
FT                 "
XX
SQ   Sequence 9390 BP; 3193 A; 1779 C; 2300 G; 2012 T; 106 other;
     tttggtggag gcgccgggta aactgagaca aatcggggag agaaccaaaa acggatttgg        60
     agtgagaaaa gtttatgact tacaaacaaa atattcgggg taaattgaga caaatcgggc       120
     cgagagacga awagcgggta tgcgacgaga aaacattwcg ggatttagag aataaaacgg       180
     ggtaaactga gaawttcgka tttcaaggaa aattgggawa gcgatgcagt atgaakctgg       240
     cacatgaaga aaaagtacat atgggaatgc tctgtcttct gatcattact atgttcgtgt       300
     atattgtgta ctggacgact tatggaaaga aattagctca ttaaaaatcg gmcccaatcc       360
     tagctaacca agcgacgaag cgaccagaag agcaataaaa agagaaacgc cacccgtaca       420
     acatatataa gaaaaacagg agagtatgtc tactggagga ggcacaggta caggcagtgc       480
     tggaagtagc acagctggca cgggcggagg aagcggaaca ggaggcggta cggcagcagg       540
     agccacgcct cacgctggtc ctgtcaaggt agcgattcag ccacgtagat ttggaggtga       600
     agagcacgaa tgcagtaaag agtttttaga tctttttgaa gaagcagcat tatgtaatag       660
     gtggacagca gatatatgca gtctacaatt cccaaactac ttgagcggga cagcagcaca       720
     gtggtggaga tcattcaaga atcaacgaat tcgagcgaca cctscaggag gagcggtggt       780
     tgcaccaacg tggacagaga taaagacggc gttccaaaaw gcatttacgt cggtaggaaa       840
     tcttgtaaat gcggaactca aactagatgc tcgccagcaa cgagtggagg aaagtccsga       900
     gagttatgta tttgccatac ttgcactatg tgatgcagta gagccaacaa tgagcgaaga       960
     gagacgggtc cggtttcttt tacgaggaat gcgtgactgg tacttaacaa agatcatgcc      1020
     cttaaatcct ctaacagtgg atgatgtgtt aactcacatg agacgcctga gtgagatgaa      1080
     acgtatgaca gaaagataca aggaaaggga agtacccatg tttcctattg aacaggaatc      1140
     tccaattctt ctgcaaatga aggagatggt gcagctgaca caaaaattgg tagaagaaat      1200
     ccaggaggaa cgaaagcaac taaaagcgga aaagcagatt aaaaatcaga gggaacgtca      1260
     ggaaagaacg cagggagggt tgaaatgttt tcgatgtgat saaatcggtc actttgccag      1320
     agactgcaat cgtagtatgc acgaaagaag caatttcaga ggaaatagat ttaatgcacc      1380
     tcgagatgga cagcgaagag tgcgattcgc aaaccccgcc cacgagaatc accggtgggg      1440
     attaagacag gaaagaatgg gagaacaccg aatgccaata ggagagggaa acggacgggt      1500
     tggagaacca atggaccgaa cttcaaccaa cattataggt cckcaaatac acgaacgttt      1560
     ataggacata ttggggaagg cagtgtgtta gaaaaagacg gaagaatcaa cgggcaaatg      1620
     tgtaaaatac ttttcgactc tggagcagga gtcaatattg taaatagtag gttcattaga      1680
     cagaaggata taattgaggc ggacaagttc gttaaattaa caggaatcac tgacggacgt      1740
     gttgaaccgt tgggtaaatg tacagtacaa atgcagctga atgawatgtt atgtccagca      1800
     gtagaagcgt atgtaataaa tgatgcmcgc tatgacttca ttgtaggaca cggggcaatg      1860
     caaaaatggg gcgtctgtat tgattataag aataatgttt tgttaatmaa cgatgaagaa      1920
     gccagacccg aagatgattt atgggcaacg atatgtgcwg taaaagaagt aaaggaasag      1980
     gaagtgagaa acacggaaac agagttaaag aaaatgattt ccgtgcaact aacgcaaggg      2040
     gagcaggagc tattattgga kactcttcga agwcacaaag aggcattttc tttcaatggg      2100
     gaattagggt gcgtgagaac ggaacactgc aaaatcacac tgaaagcaga mgctcgtcca      2160
     ttcaagtcgg taccttatag ggtcagttgg gcagaaagac agacgatwaa ggagcagatt      2220
     aaggatttgt tggaaaaagg attgattgtc agatccaata gtgaatatac gagtcccata      2280
     ttattggtag acaagggaca taaagggtcc gatggcgtaa agaataaacc gcgactwtgt      2340
     acagacctac ggaaattaaa cagtatgatt caccaggacc attatccttt accgcatacc      2400
     caagaagttt tagatactgt agcaggaaag cagtatttct tttcatgtga tttaaaaaag      2460
     ggtttctggc agttagagat ggataaggac agtcaaaagt atttgggatt tgtctgtacg      2520
     gaaggatgtt ttaactggac cagacttcca tttggcctat cgaatgctag tgccatctat      2580
     caaaaagtga tggaggaact ttatgaggag gaactattca aatcactact gattttcgtc      2640
     gatgatataa ttgggttcgg waatactttt gatgaatttc twggtaatgt ggaggtcatg      2700
     ttacgaaaat gtaaagaaaa gggttttaaa ttgtcgcctg aaaaatgcac ttttggggag      2760
     mccgaaatta gttgcctagg gcatcgagtg ggaaaagaag ggattaggcc tgatccaagg      2820
     aaaatagaag ccatacagaa aattcagcga cccaagacgt tgaagcaact acgttcattt      2880
     ctggggttaa cttcgttcta tcgacgttac atagaaaagt attcgcagat atgcaaacca      2940
     ttaactcatc tattagaaaa agacacgccc ttgatttggg gacgagcaca agaggcagcc      3000
     atgaaggaat tgaaacgacg catgtgtgct gcaccgatac tgagaccttt cgatccctct      3060
     cttccmatcg ttcttcacat tgatgcaagc aagattggck taggttgtgt ccttctgcaa      3120
     gaggaaaaga aacaacttcg tgtmgtcgcc tacgcttctc ggacgctgag taaaacagag      3180
     caaaattata cggttackga acaagaatat ctagccttga tctatgcgct gaaaaccttc      3240
     aggcactatc tgcatcaaca aaagttcact gtatacaccg accatttgaa cttgttaaga      3300
     atgaaattcg cccgtaatat ccatgcaggg agattgctgc gatggagtct tcgcttgcag      3360
     gattttaact ttacgttaat ctatcgtcca gggaaggaca atcaagactg tgacgcccta      3420
     agcagactac ccgtaaatat aaaggatcaa gaagaggagg actcagctct ggagtttccc      3480
     atgtatataa tatcttcgga ggaccacgaa cttctacaag aggaagacac gtattgcaag      3540
     aaaatagtgg aacgattaaa taaacacgac aaamgggccc atcgtcgttt tataataaag      3600
     gaaggacggt tatacaatat tcaagaaggc aggttaagat acgttgttcc acgagcagca      3660
     gtmccactct tattgaaaaa gctacatgga ggaggaactg cccatctggg atttaagaaa      3720
     gtgtatgaac aagcgaggga gagatatttc tgggatcgaa tgaaaaggga tatattaaaa      3780
     tacgtgacaa gatgtgaaac ctgtctacaa tacaaacacg ttactcataa gccatatgga      3840
     tttatgcaac atcttcccgt cagtgagaga ccctttagct ttgtttgtat ggacttcgtt      3900
     ggacctctag ttagaagtaa caagggtaac ttgcacatgc ttgtttgtgt tgactcatta      3960
     agtaagttcg taatagcgag ggcgttcccc aatgcgaaca gtgaggcagt aataaccttc      4020
     atattggaaa atttgatatg tcaggggatc gtcccggaga caattcatac ggaccgagcc      4080
     caagtattct tcagccaggg ggtaaaagaa atatgtgcaa aatggtcaat acgatggtca      4140
     tacactagcg gatttatgag cagggcaaat ggaatagctg aacgtgcaat ccaaaccata      4200
     atgagtttga tcagatgcga acttgaggaa gcacaagagg attgggatct taagatacca      4260
     gaagtattat tcgcgctaaa cacaagtaaa tccagcagca cagggttaga tgcttataca      4320
     atactgtacg gacagagtcc caggcttcaw catctagaag atattattcc agccagtata      4380
     accaaaaata cgcccttaac aaaagaggaa ttacttaagt taagaagagg cgtggtcaat      4440
     cgaatacaaa ggaccaggga aaaatacaaa gaacgctttg attccaagag acaaatatcg      4500
     ccatttmaaa aggacgatat sgtatacgtt aaaaagatga cmatgaaggc cgacgagaac      4560
     mgaaagttgg caaagaagtt tgaaggacca tatcgtgtat tggaagtttt aggggataat      4620
     ttagtgagag tagatatgag gggcaggaag catgccattg tgaatgtaga aaagttacgg      4680
     cgagcatata agcctgcatc gcaagattca ggaagcgaac atgacagcct agcagataga      4740
     gcatgggcaa atactatctc ggatgaggac atcccaaggg cggaacmasc acaagcaaac      4800
     aacgaatcag agaacagttc cagcagcgag ggcttcttac ctcctccacc accacgcaga      4860
     agcgtgagga taaaatttcg gcccaaatgg cagcgtgact acgttaccga tgagtcggaa      4920
     ctttcggaac tagattagag gggtattgta ttagtgtaca aatgtaaata aatatatttg      4980
     tagggacacg gaaggagtat ataaggagca agcaaaaagt gaagaggcat cagtcgtgat      5040
     cagggtaaca aaaggagaag atctcgggaa aaaaggtaaa caaacaggat aaaatttttt      5100
     tttwtttcaa gaaagaaaaa tcccagggaa gaatcaagaa tgtcaaaagt ttkgtgccta      5160
     ttggcactgg gtttagcggt gacgaatggc aggaaaatac agatggacat aggaatgggt      5220
     gtagaaatcw cggaggtgaa gggagctgtc ctttattcag cctcagttcc catattcttc      5280
     cgttttccag gcgtcagtta cgtctcgaat gcgccattta aatgcgaaag gctgtgtcat      5340
     tttgacattg aaaatcacaa gttaatccca cagaagacmc caggaggaga acaaattmgg      5400
     tctgggcagc gcggttgtag tgtcactcat gatgtatacg agatattgca gacaaatcgt      5460
     tacttactac aacacctgga gtcgcaagat gaagcaaggc ctgaaccaga tagattccca      5520
     agggatgcgg atgatgagaa ttgggaaaag aaaagaagtg aaagagcagc acttgcagaa      5580
     ccattgggta gtttgctgga actaatcacg ggaaatccct cagctagtac atttcgcacc      5640
     atgacggcac atgtccagta catcgaccaa ttcatgaaac ggttagcaac gatggtccag      5700
     cggaaagaag ccagcttcat cacgattgga gaagcggtca gcaaagtgac gaagcaaaca      5760
     caagacggat ttaactacat acaaaaggaa atgmgaaaca ttacctcagt ctttaatctm      5820
     ctatcaacac aatatgaaga cacggacatg aatcttctgc aattatcgct aattaacggc      5880
     gaccttatgc aacttcagca cgggatactc acgtacttgt ggatggaacg gtcccgcgat      5940
     acgtgtttgg ctaaaaaaat ccccagtctt ctcattagcc gcgaagatct agcgggacaa      6000
     ctgggagaat tacgaaaamg gttagatgcg cagggtttcc gtatggcaat cccaaactac      6060
     gagctagacc tgtatttcaa gagcaatatc tgcgattgta tcttcgagaa gagaagagga      6120
     atagtaaggg tacaagtgcc watcgtgccc cagcagagtg actggaagct gtatcgmctc      6180
     caatcmaatc cctacagtta ccatggcaaa gtcgcttcwa ttagcatccc aagcacctac      6240
     gtcgctgtca acggmgacga agtgctwcct ttcgagcaam gggacatwga gaactgtcag      6300
     acmaatgagg gtttcttatg tcagctgccw aggtacggca acaaaatgtc gmgkgcmaac      6360
     gtctgtatca aaaggctgat aaagggagaa acwatagaaa ccatccaaaa gatctgcccs      6420
     atggacttcc atgaagaaac agaaccggac atcaacgaag tkggaccamg aaagtacgtc      6480
     ctsacgaatg cggggtcgaa tcgggttgtc atcgaatgcc caggagaagt cttcccactc      6540
     gaaggaccag caattgggtc actgaacgts gagcttccct gcagttgttc wttactgatm      6600
     gattccaagm gaagggacag ggatgcattt ccktgcgtkc tgccwcacct gagaataccg      6660
     gtggtmaacc attccttgcc agcmattttc gtsacmaagt tcgscaaagt gcgaattgca      6720
     gcacacagtc caattttgct tccagtagat ggcaacttaa gcagcgtgtt ggatccaacw      6780
     gttgacatct tcgatgctag caagctgatc aaggcagcag aggagacgga agaagagtta      6840
     caagcgccca ttccagagtg gtttgagaga caattggacg attcacacat aattatattt      6900
     gtttggctgt tcgtgataac agggctwatc atctacatca tactatttta ccggcckata      6960
     acaactccgg tagcagccat cagcatgggg tcacttctcc ccagggctca ggcaaagaga      7020
     agctacagcg tagactgcgt actwccaact cacctagagg ttctgttatg ggtwtacttt      7080
     gcatgggtag tggtattcac cgtaccattc accttggcat tcatwcggcg scagtgggag      7140
     cagttcaaac tgagaagaag tttggcaaga accgtgaaag cacgccataa cagcaacgtc      7200
     caaaatggat tgctatccaa cggwacgaac mggagaattg aggatgcgga gttccagatg      7260
     aatttaagag aagaamgggt acgmaggaat caaccacaac acatggtgta tcgcccgaat      7320
     accgaggcca atgcccagga cgaaaccgga cgtaaccccg gaccatcatc atcwtcttcc      7380
     atgccagcat tttgaaattg awcaacaaac acatttttac tcagtagcac ttccctctat      7440
     attaaaaata taatatatgc ggccatattt catcctactc taacatttct ctaaaaaatt      7500
     tccaactwca gaatttacaa aataagccca taaaaatatg accatgactt tttgagaaag      7560
     ctgaaakgag gtagagagcg aacacagaac tmaactcggc aggagaagaa aacctatcaa      7620
     tcatatctca ttccaatttt gtcgtttgaa gcacacacac attaatccaa gttttcaagc      7680
     cttgtcgtct tcaaagtgaa acaagggaga agtagasggt tawacacgtg gcgatggtac      7740
     gtgagtctga caatcattca ccgagaccgg ggcatagcaa tggcacttmc agcagaagct      7800
     gttcttcggg tgattaccag aataatcatg aagcggagag aaaaggccgc gaaacaatag      7860
     aagkaaatca tcatcctcac gttaacacca gaagccatga aggagtagaa agaaatcatc      7920
     atcctcacgt taacaccaga agagagttaa caccagaagc catgaagaag gggaaagaaa      7980
     tcatcatcct cacgttaaca ccagaagcca tgaaggacca tgaaggagga gaaagaaatc      8040
     atcatcctca cgttaacacc agaagccgtg aaggagggga aagaaatcat catcctcacg      8100
     ttamcagcmg aagccatgaa ggwggggaaa gaaatcatca tcctcaaatm gacwatcgga      8160
     gccgtgaaac aaccgaaaga tatcaaaatc atcaaattgg cattcgaaat caagagatgg      8220
     tcggggagag acaagaagaa aaccggaaca aaaatgtggc aaagtacgtg ggaggcctaa      8280
     taaaagaggc cggaaagtta ttggagaagg ctgttttcca tttgggaaga agagtggaac      8340
     acttggacga aaacattgcg aaggtgacaa agcagcagaa ggatgatgat actgctgtgc      8400
     gtggaagggt ttccgtgctg gaaastgctc ataaaggttt cgcgagtgag atagaaggaa      8460
     tacaacgctc catagaaagc atgagaaaac asacaaccgc agaacaacaa agaataacag      8520
     agggtgctaa agaacgggtt aaattgcaas ttgcgggaga aaagaacaaa aagaagaaag      8580
     cacaatctaa gttgagcaaa ttccggcaga aggaaaccgt aaaaagacaa cgctataaca      8640
     atctgattgc gaaacagtac gagggtgtga tgaccaacat taatcatgtg aaaacacgac      8700
     cagcccctct gaataagaaa accgtctcta aagctataga gatggcacta gatgccaata      8760
     agactagatc cccagaagta aaacgaaagg ctggatcccc ctgcgccggg gatcagaaga      8820
     aaccgaagca acaagaagag acaaacgaac tagkgaagaa aaagactcct acaccatcat      8880
     catcagcaga aaaaccaaca acatccagag aagcgacaag gaaggaagat ccaagtacaa      8940
     gtgatgttct catcactaac ttgaacagcg atgaggatga gttcgtatca ctttctcggg      9000
     aaattgattt atcagagaca tcaagctctg gggctacgtg cactagtaca aattgtagcg      9060
     agtgcagcag cagtgaggaa gaagaacaat taacagaaga cgtaaagaaa caactggagg      9120
     aatcaaaaaa acgtaatcag gaattggaac gacaattgat gggggtgttg gcggcacaac      9180
     cactaccacc catgccagtg gaacgaggaa gacgagtaag gaaccaggca agaatcacga      9240
     gcaccccaag ctctcgacag gcagaggaga tgattcagca agatcaacag gagaatgatg      9300
     aagattccga gtagaacwgg aaagattaca aaagaaggta ttctaaaggg tcaaaagact      9360
     ggggcagtct ttcatggggg aggggactaa                                       9390
//
ID   Gypsy-25_SiCu-LTR repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-574
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5102-5102 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 574 BP; 208 A; 43 C; 151 G; 143 T; 29 other;
     tgttaggtat tttttagtat aaaaatattt ttaagcatgt tttattgtga gaaagaatga        60
     tggtatgtat gaatgtgaac ctaggaataa gatgtaggag ggaagggaat aagcttgtat       120
     gtagataggt attctacttg gcaaaagaca agaggaatat aaacaaacat ttgtaagtaa       180
     gggtttctcc ttaataattt ttggtgaaga ggatgatgtg tatttamgma gagcatgaat       240
     gaawgwaaga cactttgtat ataatttagg agtagatcwt aagaagkaag mgagggatgc       300
     agagggagga ggataaaagg gcaaggggtg aggaggagag gggcatcact ckgtgatcgg       360
     gtctcskmks wkaaaggama agggsagwwa mataagggaa aaagggtctt gaaggaaawc       420
     aagttastgg gttaaaaags gagagcaagg gtcttttggg tacacggaaa atagagtaga       480
     atctaggata ttttaagaaw tgcacatgta atggwwgaat gatacttgtt atgaawcgaa       540
     ataaaaatct cwttwcaaaa ataaaaacct aaca                                   574
//
ID   Gypsy-25_SiOr-I repbase;    DNA;    INV; 5199 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5199
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 361-361 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           500..5185
FT                 /product="Gypsy-25_SiOr-I_1p"
FT                 /translation="MAERNENEDFEDSVSHEFEMRMPGIDENLNINRMMSI
FT                 MLEENRRRDLVMERLIDKVTTPMSEAGRSEDHFQIMPDLTKNIRYFDGEAK
FT                 SNASEWLKNLKSMKLLHNWPDQFVLETARIHLVGGAKHWMLSKIEDIRTFQ
FT                 DFENAFKKTFIGKVSLAEKWRLMEARIQKKEESLSNYFHEKVKLCKDLGLE
FT                 FMDTREQILVGLYDKNLCDVTSGKMHIDVDDLLHSLEEFERISNRRKLRHR
FT                 EIIRNEKHFETKPDTRNQQQQSEQNKTVHEQRSRYLPPRNDKNQPLCFVCK
FT                 KYGHTSKYCRTNSSNGTSQSNQNQSNQDRNVNVCITSMDFNKMSQKYFQEA
FT                 MIDGKPIQTYVDLGSQGNLIRKSSAEQLNLEIKSIKTPLTVRGFGYGKVDI
FT                 LAEIEVEIEIDQAKAFTKLLVVPDNYLDIPLLLGQPFTEQKHIVIIKRGDQ
FT                 LRIFEDEHIEDQSNLTKIQIPTLPMQKVNLWSNEKKVIPKNYIGFLEVYIK
FT                 DNLKEDLYIESTNDERRCIPRCVVAVNENLQTYVPIINLNNADLSIDKNEK
FT                 VARAVRCREAQEENIEVNKNNLEIFEENSEDKIKKEDIHINDHISTETQMK
FT                 LIKILNQYSDCFANSLKELGCTPEFECKIETTTDQPVTYRPYRLSHSERAK
FT                 VREMVEELKNAGIIVDSNSSYASPILIVKKKTGDERFCIDYRGLNKITTKM
FT                 EFPLPIIEDQLDRLSGKNYYTSLDMKSGYYQVPVEKNSRAKTAFVTSDGIY
FT                 EFKKMPFGLLNGPAIFSKMINHVLGPLRFTIAMAYMDDILLPSVTEEEGLN
FT                 NLEEILIVLRRANLKLNLKKCFFLEENIEYLGYEISKGEIRPGRKKLKSVS
FT                 DFPTPENVKNIRQFLGLTGYFRKFIKSYAIKAKPLTKLLSKNTKWIWDQDQ
FT                 QEAFELLKEELTSTSVLRLYDPKAYTEVHTDASMIGLGAILLQRGSNDEMH
FT                 PVAFISRQTTPEEQKYHSGELETLCVTWALERLRTYLIGIHFVVVTDCNAL
FT                 RTTFTKKNLIPRIGRWCLKLLDYDYEIKHRPGKNMEHVDALSRNPIEVTEE
FT                 TDCGEGIQLLITHLDEEDWLCVLQRKDQQIQRIADVLQKKEPENIEERRLL
FT                 TEYEIRDGRVYKNENGNLKWAVPKRIRWRIVQKCHDELGHLALEKTLQKIK
FT                 EKYWFARMRNYVKGYIGSCVKCLYNKTPGGRRKGYLHSIDKIGIPLHTIHI
FT                 DHLGPFVTSKRGNKHILVIVDGFTKFTILKAVKSTSSSTVVNILEDLFYLI
FT                 GKPYRIITDRGTAFTGNAFKKLCERNDIIRVQNAVSTPRANGQCERVNRLI
FT                 TPSIASLSNVDDGTDWDKQVNKVQWSINNTIHQATKSTPYGLLFSFDPREI
FT                 QYDPVDDEIENETRNSSSIELRRKKAIENILEDQMKQRERYNKNRVKSEEF
FT                 QPGDMVMLRSENVTASGDSRKLIPKYKGPYVVIEKLPHDRYRIEDLPEIQR
FT                 TQRFYRGVAAADALKHFDLTQNLEDSEEDVQTDETDSEDDEPSDDNVHKSE
FT                 QHEPKMDSQEKRSQDDCSQVVDYEPKRIKRKPTYLKDYCLSEDEKD"
XX
SQ   Sequence 5199 BP; 2075 A; 692 C; 1034 G; 1397 T; 1 other;
     tttcagaagt ggataaagaa mttatagcga aaatagcgtg gtttgccagt gtcgcgtagt        60
     gatgtttgtg attgtgtttg tgagttatca gtggactgat tgaggacttg tgtgaactta       120
     tgtgaactga gaaaagtaga cattatttta agtgaagtga actgaaattt actgaaattt       180
     attgagatta taaacttaaa aagacattaa cctgtgaaac tcgtccgcct ttagttttta       240
     cgactaatgc gccatctctt cgaattagtg ataacaagaa ttgattgcca tctagtgagt       300
     aaccttggaa ctaacgaatt tcaaagctac agaagttcta ccctattagc agaaatttga       360
     aaagcgccat ctcgtaacca caagccgaag cttagtttca ttcgccagat tttcaaaaaa       420
     ttgtcaagaa aatttttaaa tttttattta ccaaattgtc aagaaacttc ttaattttaa       480
     ttgtcaaatt gtcaagaaaa tggctgaacg aaacgaaaac gaagattttg aagacagtgt       540
     tagccacgaa tttgaaatgc gtatgccagg aattgatgaa aatctaaata taaatagaat       600
     gatgtcgata atgttagagg aaaatcgaag aagagattta gtcatggaaa gattaattga       660
     taaagtaact acaccaatgt cagaggctgg tagaagcgaa gatcattttc aaattatgcc       720
     cgatttaacg aaaaatatta gatattttga tggtgaagca aaatcgaatg ctagcgaatg       780
     gttaaaaaat ttaaagagca tgaaattgct gcataattgg cctgaccaat ttgtattgga       840
     gactgctcgc atacatttag tcggaggagc taaacactgg atgttgagca agattgaaga       900
     tataagaact tttcaagatt ttgaaaatgc atttaagaaa acatttattg gaaaagtgag       960
     cttagctgaa aaatggagat taatggaggc ccgaatacag aaaaaagaag agagtttaag      1020
     taattatttt catgaaaaag taaaattatg taaggatttg ggattagagt ttatggatac      1080
     aagagagcaa attttagttg gattatatga taagaattta tgtgacgtaa cttctggaaa      1140
     aatgcatatt gatgtagatg atttattgca ctcgttagaa gaatttgaaa gaataagtaa      1200
     tagaagaaaa ttgagacatc gagagatcat aagaaatgaa aaacattttg aaacaaaacc      1260
     tgatactaga aatcaacagc aacaatcaga gcaaaataaa acagtccatg aacaacgaag      1320
     tagatatttg ccaccaagaa atgacaaaaa tcaaccatta tgttttgttt gtaaaaaata      1380
     cggtcataca tcgaagtatt gcagaactaa ttcttcaaat ggaacaagtc aatcaaatca      1440
     aaatcaatca aatcaagata ggaatgttaa tgtttgtatt accagcatgg attttaataa      1500
     aatgagccag aaatattttc aagaagcaat gattgatgga aaaccaattc aaacttatgt      1560
     tgatttagga agtcaaggaa acctgattag aaagtcaagt gctgaacagt tgaatttaga      1620
     aataaaaagt atcaaaaccc cattaactgt aagaggattt ggttatggaa aagtggacat      1680
     attagcagaa atagaagttg aaatagagat tgatcaagct aaagcattta caaaactttt      1740
     agtagtaccc gataattatc ttgatattcc attattgtta ggacaaccat tcactgaaca      1800
     gaagcacata gttattataa aaagaggaga tcagttgaga atatttgaag atgagcatat      1860
     tgaagatcaa tcgaacttga ctaaaataca aataccaaca ttaccaatgc aaaaagttaa      1920
     tttatggtca aacgaaaaga aagtaatacc taaaaattat attggatttt tagaagtata      1980
     tatcaaagac aatttaaaag aagatctgta tattgagtcg acaaatgatg aaagaagatg      2040
     tatcccaaga tgtgtagtag ctgtgaacga aaatttgcaa acatatgtac caatcataaa      2100
     tttaaataat gctgacctgt ccatagataa aaatgagaaa gtagcaagag ctgtacgttg      2160
     tcgtgaagct caagaagaga atattgaagt aaataaaaat aatttggaga tttttgaaga      2220
     aaatagtgaa gataagatca aaaaagaaga tattcatata aatgaccata tttctacaga      2280
     gacacaaatg aaattaataa agattttaaa tcaatattca gattgttttg ccaacagtct      2340
     aaaagaatta ggatgtacac cagaatttga atgtaaaata gaaaccacaa cagatcaacc      2400
     agttacgtat cgtccatata gattaagtca ttctgagaga gcaaaggtac gggaaatggt      2460
     agaagagctg aagaacgctg gaattatagt agattcaaac tcatcctatg ctagtccaat      2520
     actaattgta aagaaaaaga cgggagatga aagattttgt attgattatc gaggcctaaa      2580
     taaaatcaca acgaaaatgg agtttccact accaataatt gaggatcaat tagatagatt      2640
     gtctggaaaa aactattata catcattaga catgaaaagc ggatattatc aagtaccagt      2700
     agagaaaaat tcaagagcga aaacagcgtt tgtcacaagt gatggtatat atgaatttaa      2760
     gaagatgcca tttgggttgt tgaatggacc ggccatattc agtaagatga ttaaccatgt      2820
     actaggacct ttaagattta caatagcaat ggcatacatg gatgacatct tgttacctag      2880
     tgtaacagag gaagaaggat taaataacct tgaagaaatt ctaattgtgt tacgaagagc      2940
     aaatttgaaa ctaaatctaa agaagtgttt ctttctagaa gaaaatattg aatacttagg      3000
     ttatgaaata tcgaaaggag aaattagacc aggaagaaag aaactgaaga gtgtaagtga      3060
     ttttccaaca cctgagaatg tgaagaatat cagacagttt cttggtttaa caggatattt      3120
     cagaaaattt attaaaagtt atgccataaa agcaaaacca ttaacaaaac tgttatcgaa      3180
     aaatactaaa tggatttggg accaagatca gcaagaagcc tttgaacttt tgaaagaaga      3240
     attgacaagt acgagtgtgt taagattgta tgatccgaaa gcatatactg aagttcatac      3300
     tgatgcttca atgatcggac taggagcaat tttgttacaa agaggttcaa atgatgaaat      3360
     gcatcctgtt gcatttatta gtagacagac tacacccgaa gaacaaaaat atcattcagg      3420
     agaattagaa actttatgtg ttacctgggc attagaaaga ttgagaactt acctgattgg      3480
     aatacacttt gttgttgtaa ctgactgtaa tgctttacgc actaccttca cgaaaaagaa      3540
     tctaatacct agaataggta gatggtgttt gaaattattg gattatgact atgagattaa      3600
     acatcgccct ggtaaaaata tggaacatgt tgatgcttta tcgcgaaatc ctatagaggt      3660
     gacagaagaa acagattgtg gagagggaat tcaactactt attactcacc ttgatgaaga      3720
     agattggttg tgtgtcttac aaagaaaaga tcaacaaatc caaaggatag ctgatgtatt      3780
     acagaagaaa gagcctgaaa atatcgaaga aaggagattg ttaacggaat atgaaattag      3840
     agatggaaga gtgtacaaaa atgaaaatgg aaatttgaaa tgggcagtac ctaaaagaat      3900
     cagatggaga atagtgcaaa aatgtcatga tgaactggga catttagcat tagagaagac      3960
     attacaaaag ataaaagaaa agtattggtt tgccagaatg agaaactatg taaagggtta      4020
     tataggttca tgtgtcaaat gcctatataa taaaacgcca ggaggaagaa gaaagggata      4080
     cttacattcc attgataaaa ttggtatacc tctacataca atccatattg accatttagg      4140
     accatttgtg accagtaaaa gaggaaataa acacatttta gtgatagtag atggatttac      4200
     taaatttacg atacttaaag ctgtgaaaag tacatcgtct tcgacagtag taaacatatt      4260
     agaagattta ttctatctaa tagggaaacc atatcgaatc attacagata gaggaacagc      4320
     ctttactgga aatgctttca agaagttgtg tgaaaggaac gacattatac gtgttcaaaa      4380
     tgcagtgtca accccgagag caaatggaca atgtgaacgt gttaatagat tgattactcc      4440
     gtctatagca tcgcttagta acgtagatga tggaacagat tgggacaaac aagtaaacaa      4500
     agtacaatgg agcataaaca acactataca ccaagcaacg aaaagtacac catatggttt      4560
     attgtttagt tttgatccta gagaaataca atatgatcca gttgatgacg aaatagaaaa      4620
     cgaaacacga aatagtagta gtattgagct aagaagaaag aaggctatag aaaatatttt      4680
     agaagatcaa atgaagcaaa gagaaagata taataagaac agagtgaaat cagaagagtt      4740
     tcaaccagga gacatggtca tgttaagaag cgaaaatgtt actgcttctg gagattcacg      4800
     gaagttgata ccaaaataca aaggacccta tgtagtaata gaaaaactac ctcatgatcg      4860
     ttacagaatt gaagatttac ctgaaatcca acgaactcag agattttacc gaggcgtagc      4920
     tgccgcagac gccttgaaac atttcgattt gactcaaaac ttagaagatt ctgaagaaga      4980
     cgtacaaaca gacgaaactg acagtgaaga tgatgaacca tccgacgaca atgttcataa      5040
     gtcagaacag catgaaccga agatggattc acaagaaaaa cggagccaag acgactgtag      5100
     tcaggtggtt gattacgaac ctaagaggat taagaggaag cctacttacc ttaaagatta      5160
     ctgcctttcc gaggacgaaa aggattaagg atggccgaa                             5199
//
ID   Gypsy-25_SiOr-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-269
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 394-394 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 269 BP; 94 A; 37 C; 49 G; 89 T; 0 other;
     tgttaaagac atattatttt tcatattatc atatatattt cttatattgt tatacatatt        60
     taagttggta gcattgatcg ttaagtggtg acctcgggta gagagagaga ccgccatgaa       120
     ataatcaagc gaccaagtgt tataaataaa gcagttttta attagtgtgt gcccttttgt       180
     gtaccccatt agataactag aaacagtgaa ctaaagtgaa cttaaataaa atccagagaa       240
     caagtgacca gggttctagt tatttaaca                                         269
//
ID   Gypsy-25_SpEx-I repbase;    DNA;    INV; 4394 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4394
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4094-4094 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..1172
FT                 /product="Gypsy-25_SpEx-I_1p"
FT                 /translation="MEKLCFEFTVLPASDGKSSICCLTSIATIGGKVYALP
FT                 EELQSVSHHKELIRTTVFNKVKNSLKKRYQTRRVWISMNGDLKRTYLDEDE
FT                 NLQFEDQYLEEVQVKTAVAQDTQTGVFEKLFEQLVQNTQESKQQNLKQITE
FT                 KFLIEKFTSKNPNANRWIDTFEKECTRFSITEDDKKIEALRLFMDKCCTDW
FT                 YNSMIIKYTIDSDWTTWKNIFCETFTNKGWTQISYALSFKYRDGLLLDYAI
FT                 KKEKMLLEMRNSIDTGTIIDLIAVGLPEHVLNRIDRETLKDTVDLFNEVRK
FT                 FEYLVNKRSYSFYRKHSGNSKGYNINDRNEEKNSCKICETLNKGIRYHPES
FT                 ACWYRTKEEEKPKVKNIRHVNNSVIEAQLNEAEQKN"
FT   CDS           1157..4324
FT                 /product="Gypsy-25_SpEx-I_2p"
FT                 /translation="SRTKKLIVTPLINVKLLINDTLEIYGVYDSGSNVSLI
FT                 NSKLLKLNGKRNSLNEASLMTINGVKKASGLTNLKIKIFEIENNVEVYIID
FT                 EQNFKYDFLIGLDMIKKFKLIQNENLEITQKYNLETETVKEIVTNIKPSTI
FT                 GTTGKRNKELEEISMDIITPNAKEKKRENIKEIKINFNEHVQDEQFKIETN
FT                 HLNSYQKIEIDKLINKYSSIFAKHKYDVGTVKGYEARIDLLLDKYCSKRPY
FT                 KCSIDDKKEIEEQVGKLLDNKLIEESYSPFAAPVTLAFKKEENKKSRLCID
FT                 FRDLNKIIVPEAQPFPLIEDLVTKTRNCNFYSTLDINSAFWSIPLRIEDRN
FT                 KTGFVTQDGHFQWTCLPFGLKTAPAIFQRILSNVLRKNKLTDFAVNFIDDI
FT                 LIFSQSFDQHIIHLTQLLEAIKREGFRLKFKKCTFASNSVKYLGHIIGNNS
FT                 IKPIKDNLISIRNFPTPKTQKNIRQFLGKINFYNEYIPRSAIILDPLHKLL
FT                 RKNQPFIWSEECQNAFEKIKALLCSQPVLAIFDKDLPIKIYTDASIEGVGA
FT                 ILKQIQPDGKEKPVAYFSKKLNESQKKKKAIYLECLAIKEAIQYWQYWLIG
FT                 RSFTVYSDHKPLENLNLKSRPDEELGDLTYYLSQYNFVIRYTPGKENLESD
FT                 CLSRNPVLESNENTNEQLKIVNLVNLEEILRDQNKNEEIQNNKERMINKQD
FT                 IYYKKVRNREKIILSEEFSIKFLKMVHENLCHIGIKQLQKTISPLYTARNL
FT                 TKNIKKICIECDICIKNKSRGKHKFGLMSHLGPATKPFEIVSIDTVGGFGG
FT                 SRSTKKYLHLLVDHFTRYAFISTSKTQNANDFIKLVNNVSESDEIDILLTD
FT                 QYPGINAKEFKKFLKDKQITVVFTAVNSPFSNGLNERLNQTLVNKIRCKIN
FT                 EDGNKKAWTTIAHECVKKYNQTIHSVTGFSPSYLLYGIDVTVLPEELKKEN
FT                 THINWIRDRTIALENTIKSHNYNKTIFDKNRRCHEFNVGDMVYVENGNKLN
FT                 RKKLEELKIGPFRIIEQVSKSIYRIDTGHKKTESNFFHVTKLIPIPIKQG"
XX
SQ   Sequence 4394 BP; 1842 A; 597 C; 747 G; 1208 T; 0 other;
     aaacgacttt tttgtttata acgagatatg taaaaatgga aaaactttgc tttgaattca        60
     ccgtacttcc tgcaagtgat ggaaaatcaa gcatttgttg tttaacctca atagcgacaa       120
     ttggaggaaa agtatatgcc ctaccagaag agcttcaatc tgtgagtcac cacaaggaac       180
     tgataagaac cacagtcttc aataaagtta aaaacagctt gaagaaaaga taccagactc       240
     gaagagtttg gatatctatg aacggagact taaagagaac ctatttagat gaagatgaaa       300
     atttgcaatt cgaagaccaa tatttggaag aagtacaagt gaaaactgca gttgcacaag       360
     atacacaaac aggtgtgttc gagaaattat tcgaacaact agttcaaaat acacaggagt       420
     ctaaacagca aaatcttaag caaatcactg agaagttttt gattgaaaaa tttactagca       480
     aaaatcctaa tgcaaatcgg tggatagaca cttttgagaa agaatgcaca cgcttcagta       540
     taacagaaga tgacaaaaaa attgaagcac tcagattgtt catggataag tgctgtaccg       600
     attggtataa ttcgatgatc ataaaatata caattgattc agattggaca acatggaaaa       660
     atatattttg tgagacattt acaaacaaag ggtggaccca aattagttat gctttatcct       720
     tcaaatatag agacggtttg ttgttggatt atgctataaa aaaagagaaa atgttattag       780
     aaatgagaaa ttcaattgat acaggtacga taatagattt aattgcggtg ggcctgccag       840
     aacacgtgct aaatagaatt gaccgagaga cgttaaaaga cacagtagat ctttttaatg       900
     aggtgagaaa atttgaatat ttggtaaata aaagaagtta ttcattttat agaaaacatt       960
     caggaaattc aaagggatac aatataaatg atagaaatga ggaaaaaaac tcatgcaaaa      1020
     tttgtgaaac attaaataaa ggaattcgct accatcccga gtccgcttgt tggtatagaa      1080
     caaaagaaga agagaaacca aaagtaaaaa acattagaca tgtaaacaat tctgttatag      1140
     aagcccaatt aaatgaagcc gaacaaaaaa actaatagtg acaccattaa taaacgttaa      1200
     actactcata aatgatactt tggaaattta tggagtttat gattccggat caaatgtttc      1260
     gttaataaat tcgaagctgt taaaactaaa cggaaaaaga aacagtttga atgaagcaag      1320
     cttaatgact attaatggtg ttaaaaaggc gagtggtttg acaaacttga aaattaaaat      1380
     atttgaaata gaaaataatg ttgaagtgta cattatagat gaacaaaatt tcaaatatga      1440
     tttcttaatt ggattagaca tgataaaaaa gttcaagtta attcaaaatg aaaatttaga      1500
     aatcacacag aagtataatt tagaaacaga aacagtaaaa gaaattgtta caaatataaa      1560
     accaagtaca ataggtacaa caggaaaaag aaataaagaa ttggaagaaa tttctatgga      1620
     tataataact cctaatgcta aggagaaaaa aagagaaaat ataaaagaga taaagattaa      1680
     ttttaatgaa catgtacaag atgagcaatt caaaattgaa actaatcatc taaatagtta      1740
     tcaaaaaata gaaatagata aacttattaa taaatatagt tcaattttcg caaaacataa      1800
     atacgatgtg ggaaccgtca aaggatatga agctagaata gatttattac tggacaaata      1860
     ttgcagtaaa cgaccttata aatgttcaat agatgataaa aaagaaatag aagaacaagt      1920
     aggaaaactt ttagataata aattaataga agaatcatac agtccgtttg ctgcgccggt      1980
     gacactggca tttaaaaaag aagaaaataa aaaatccaga ttatgcattg atttcagaga      2040
     tttgaataaa ataatagtac cagaagctca accatttcct ttaatagaag acttagtgac      2100
     taaaacaagg aattgcaatt tttattcaac tctggatata aattctgcat tctggtctat      2160
     tcccctgcga atagaagaca gaaataaaac aggatttgtc actcaagatg gtcattttca      2220
     atggacttgt ttgccatttg gactgaaaac tgcaccagct attttccaac ggatattaag      2280
     taatgtgcta agaaagaaca aacttacaga tttcgctgtg aatttcattg acgatatttt      2340
     aatattcagt cagtccttcg atcaacatat tattcaccta acacagcttt tagaagcaat      2400
     caaacgtgaa ggtttcaggt taaaatttaa aaagtgcacg tttgcatcaa actctgtaaa      2460
     atacctcggt catataattg ggaataattc tattaaacca attaaagata atctcatttc      2520
     cataagaaat tttcctaccc cgaagacgca gaaaaatata agacaatttc taggaaaaat      2580
     aaatttttat aatgaataca taccaaggag tgcaataata ttagatccat tgcataagtt      2640
     attaagaaaa aatcaaccat ttatttggtc tgaagaatgc caaaatgcgt ttgagaaaat      2700
     aaaagctctc ttatgctcgc aaccagtgct tgctattttt gataaagatt tacctatcaa      2760
     aatatacacg gatgcatcta tagaaggtgt tggcgcaatt ttaaaacaaa ttcaacctga      2820
     tggaaaagaa aaacctgtgg cttacttttc taaaaaactc aatgagtctc aaaagaagaa      2880
     aaaagcaata tacttggaat gcctagctat aaaagaagct atacagtatt ggcagtattg      2940
     gttgataggc agatcattta cagtttattc ggaccataaa ccgttagaaa acttgaattt      3000
     gaaatcaaga cccgatgaag aattaggtga tttaacttat tatttgtccc aatataactt      3060
     tgttattaga tatactccag gaaaggaaaa tttggaatcg gattgcctga gtagaaaccc      3120
     tgtgttggaa tccaatgaaa atacaaatga acaattaaag attgtaaact tagtaaatct      3180
     cgaagaaatt ttaagagatc agaataaaaa tgaagaaata caaaataata aagaaagaat      3240
     gataaataaa caggatatat attataaaaa agttagaaac agagaaaaaa taattttgtc      3300
     agaagaattc agtatcaaat ttttaaaaat ggttcatgaa aacctttgtc atattggaat      3360
     aaaacaattg cagaagacaa taagtcctct atacacagca aggaatttaa caaaaaatat      3420
     taaaaaaata tgtattgagt gtgatatttg tatcaagaat aaatcaaggg ggaaacacaa      3480
     atttggactt atgtctcatc tggggccagc cacaaaacca tttgaaatag tatccataga      3540
     cacagttggg ggttttggag gttcaagatc tacaaaaaaa tacttgcact tgttggtaga      3600
     tcatttcact agatacgcat ttatatcaac gtcaaaaact cagaatgcaa atgattttat      3660
     taaactagtc aacaatgtat cagaatctga cgaaatagat atactactca cagatcaata      3720
     tccaggtatt aatgcgaaag aattcaagaa atttctaaaa gacaaacaaa ttactgtagt      3780
     atttactgca gtgaactcac ctttctctaa tggtttgaat gaaaggctaa accagacatt      3840
     agtcaataaa atcagatgca aaattaatga agatggaaat aagaaagcct ggacaacaat      3900
     agcgcatgaa tgtgtaaaaa aatacaatca aactattcac tcagttactg gtttttcacc      3960
     aagttatctt ttatatggta tagatgttac agttttgcca gaagaattga agaaagagaa      4020
     tacacatatt aactggatca gggataggac aatagcactt gagaatacaa taaaatcaca      4080
     taactataac aaaacaatat ttgacaaaaa taggagatgc catgaattca acgttggaga      4140
     tatggtgtat gtggaaaatg gtaataagct aaataggaaa aaattagaag agctgaaaat      4200
     tggacctttt cgaatcattg aacaggtttc aaaatcaatt tataggattg acacaggaca      4260
     caagaaaaca gaatcaaact tttttcatgt cacaaaactt atccctatac caataaaaca      4320
     aggataagta agaagtgaag gagcctttaa agaaaattta tctctgaaaa ttttcttact      4380
     cgaagggggg gaga                                                        4394
//
ID   Gypsy-25_SpEx-LTR repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-324
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4154-4154 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 324 BP; 120 A; 24 C; 40 G; 140 T; 0 other;
     tgtaaagaaa aatacattac tttttcttta ggatttaatt attattttaa tgttgttatt        60
     attttctttt ttatgtctat agagttttta tgttaatgtg atgataataa acctccgtgg       120
     tttagttcat gttaaaaaga agaaatattt tgacaagtca tttatgtaat tgttttctgt       180
     taaaaaattg taaaaaataa atatatgtta aaatagaata attaatattg tgaagaaata       240
     aacttttaaa gtcgtttctt tggtaacaaa gcaacacaag tttattttat ttattcctat       300
     taaagaaaaa gtttccgtat tata                                              324
//
ID   Gypsy-25_TrNi-I repbase;    DNA;    INV; 5303 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5303
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 228-228 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..1013
FT                 /product="Gypsy-25_TrNi-I_1p"
FT                 /translation="MAFQGSPALTTASGKCVLTTATETGGGRLAVTEVPEL
FT                 AAITVTSRIPEFWTNMPRLWFNQFECVMAQQKQGDESKYNLVVSKLNMDVL
FT                 QQVSDILRDPPAQDKYSTLKQRLISVYEESAEQQFRKLVSEIELGSQKPSQ
FT                 LLRKMADLGRNSEISGQALCNLWLAKLPAAVRAGLAVTQEKDLEKLATIAD
FT                 KIVENLNANTIAAVCSDSVPSAPSCSNQVYAVGDLLTQINKLSLEVASLKN
FT                 EIEVQGHRRNSFRGRGRGRWNARSRSRSRDGHKKMNAEDPNWLCKYHFRYR
FT                 TRARNCEKPCAWIKKKEN"
FT   CDS           1001..4216
FT                 /product="Gypsy-25_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KEGKLTTVHSVAGEHVPGTNNRLSVTDSRNNIQFLVD
FT                 TGANISVIPAKFKDKSSGECAKYKLFAANGSEIKTYGIKSLVLNLNLRRSF
FT                 RWTFVVANVVQPILGADFLKHYRLLVDLSSRKLIDQVTNLNIIASVIQCDQ
FT                 ESINTINSNHPYYDLLMEYSEITKPVLFKEMPPHSVYHYIETSGPPVHARA
FT                 RPLPPDRYQKVKAEFALMQELGICRPSKGAWASPLHVVPKKDGQLRPCGDY
FT                 RQLNAVTKPDRYPIPKLQDFTYVCASKKIFSRLDINRAYHCVQVAPQDVEK
FT                 TAIITPFGLFEFVRMPFGLRNAAQTFQRFMNNNVLQGLDQHVQDNKNCMEP
FT                 FYFCYLDDVIIASDSEESHKRHLKLIFERFNQFGITINLSKCVFGATEIDF
FT                 LGYKVSTEGIKPLEEKVKTIIDYPKPETVEQLRRFLGMINFYRAHLPHAVE
FT                 YQKELNKYLHNAKRKDKTKIIWTELAENAFSKCKESLQNSVLLSHPAMDVP
FT                 LALMTDASNSCVGAVLQQQIEGQWRPLGYYSKQLSESQQKYSTYDRELLAI
FT                 FLAMQYFRKMFEGRKLIIYTDHKPLTFAFSRKISEKETPRRTRQLSYISEF
FT                 TTDIRYITGDKNVVADTLSRIETIDCPTRIDYEDLAKEQKLDRELCKRVES
FT                 TKDTLQFREIFLPNCKVPIICDMSTQVARPYLTEKYRKLAFESIHNLSHPG
FT                 MRATKKLIKDRYYWPAMNAQIAKWTKTCISCQKAKVQRHMTSELGEFMPSA
FT                 RFEHIHVDLVGPLPTTSEGHRYLLTIIDRATGWPEAYPLKEITAKLVAQVI
FT                 FENWIVRFGCPIRLTTDQGRQFESDLFLQLTKFLGIDKIRTTPYHPQSNGM
FT                 IERWHRSLKVALRARLDNNTSWLQELPIILLGLRAVPRNDTNVSAAELTYG
FT                 LKLRLPGDFYDCSHSNLNYDNEYVNHLRNLFQNLRPRNVQQRDSRTIFVHP
FT                 DLSSCDHVFIRNDIMRGSLQPPYLGPYKVIKRGSKSFKVDILGKNILVSID
FT                 RLKPAYLLNDKIVKLNQRCSDEYSHDIKISSQPQSSQHESPTNIEKPVTYT
FT                 TRSGRASKLPVRFLI"
XX
SQ   Sequence 5303 BP; 1763 A; 901 C; 1091 G; 1548 T; 0 other;
     gtggtgaccc cgggacatta agaggtagtt tttgagtgga caatagtgaa cgtgaattac        60
     ccgacgaaca gttctgcagt accatggctt ttcaaggttc accagcattg acaacggcat       120
     caggaaaatg cgttctgact acggcgacgg agacgggagg aggaagactg gctgtcactg       180
     aggtgccaga actagctgcc attaccgtaa cctcacgtat tccggaattt tggacaaata       240
     tgccaaggct atggttcaat caatttgaat gtgttatggc tcagcaaaag caaggagatg       300
     aaagcaaata taatcttgtg gtttcgaaat tgaatatgga tgttctgcag caggttagcg       360
     atatactccg cgaccctcct gctcaagaca aatattcgac cctgaagcag cgattgataa       420
     gcgtctatga agaatcggct gaacaacaat ttcgcaaatt agtgagtgag atagaactgg       480
     gaagccagaa gccttctcag ctgctcagaa aaatggcaga cttaggccgg aattcagaaa       540
     tttcgggaca agcgctatgc aacttatggc tagcgaagct tccagcggca gttagagcag       600
     gtttagccgt tacgcaagag aaagacctgg agaaattggc cacgattgca gataagatag       660
     tcgaaaacct caatgcgaat accattgcag ctgtatgttc agattctgtt ccgtcagcac       720
     cgtcctgcag caaccaagtt tacgcggtag gcgacctcct gacgcagatc aacaaattgt       780
     ctttagaagt ggcgtcactg aaaaatgaga tcgaggtcca aggccacaga agaaacagtt       840
     ttcgaggacg aggacgcggc cggtggaatg cacgctcaag atcaagatcc agagacggac       900
     ataagaagat gaatgcagaa gacccaaatt ggttatgcaa gtatcacttt cggtatcgta       960
     cacgggcacg taactgtgag aaaccatgcg cctggattaa aaagaaggaa aactaactac      1020
     ggtacattct gtggcgggag aacatgtacc gggtaccaac aaccgcctaa gtgttacaga      1080
     ctctcggaac aatattcagt ttttagtgga cacaggagca aatatttcgg tgataccagc      1140
     caaattcaag gacaagagca gtggtgagtg tgctaaatat aaattgtttg cagccaacgg      1200
     tagtgagata aaaacgtacg gtattaagtc gcttgtgctt aatttaaatt taaggcgttc      1260
     gtttcgttgg actttcgttg tcgcgaatgt agtacagcct atattaggag cagatttttt      1320
     aaaacattat agattgttag tagatttaag ttctagaaaa ttaatagacc aagttacgaa      1380
     tctgaacatc attgcttccg taattcagtg tgatcaagaa tcaattaaca cgattaatag      1440
     taaccatcct tattatgatc ttttgatgga atattctgaa ataactaagc cagtcctatt      1500
     caaagaaatg ccgccgcatt cagtttatca ttatattgaa acttccggtc cgccggtgca      1560
     cgcgcgcgct agaccgctac cgccggacag gtatcaaaag gttaaggctg aattcgcatt      1620
     gatgcaggag ctaggaatat gtaggccctc taaaggagct tgggcgagtc cattacatgt      1680
     tgttccaaag aaggatggac aattacgtcc ttgtggtgat tacaggcaat taaatgctgt      1740
     tacaaagcca gacagatatc caattccgaa gttgcaagat tttacttatg tttgtgccag      1800
     taaaaaaata ttttctcgtt tagatatcaa ccgtgcttac cactgtgttc aggtcgcacc      1860
     acaagatgtt gaaaaaacag ctattataac accttttgga ttattcgaat ttgtacgaat      1920
     gcctttcgga ttacgtaatg cggctcagac gttccaaaga tttatgaata ataatgtatt      1980
     acaaggcttg gatcagcacg tacaggataa taagaattgt atggaacctt tttatttttg      2040
     ttatttagat gacgtcatta tagctagcga tagtgaagaa agtcataagc gacatttaaa      2100
     gttaattttt gaaagattta atcaatttgg tatcactatt aatcttagta aatgtgtatt      2160
     tggagcaact gaaattgatt ttttgggata taaagtttct acagaaggta tcaaacccct      2220
     agaagagaag gtaaaaacta taattgatta tccaaagcca gaaacagtag aacaattgag      2280
     acgttttcta ggcatgatta atttttacag agcccattta ccgcatgctg tagaatatca      2340
     aaaggaatta aataaatatt tacataatgc taaacgtaaa gataagacta aaataatttg      2400
     gaccgagtta gcggaaaatg ctttttccaa gtgtaaagag agtttgcaaa atagtgtttt      2460
     attatcgcat ccagctatgg acgttccgct agcgcttatg actgacgcat caaattcttg      2520
     cgtaggtgca gttttgcaac agcaaataga aggtcagtgg agaccactag gttattattc      2580
     gaaacaattg tccgaatcgc aacaaaaata ttctacatat gatcgtgaac ttttagcaat      2640
     ttttttagcg atgcagtatt tccgtaaaat gttcgaagga aggaaattaa ttatttacac      2700
     tgatcacaaa cctttaactt ttgctttttc ccgcaagata agtgaaaaag agactcctcg      2760
     gcgaactcga caactatcgt atattagcga attcacgacg gatataagat atattacagg      2820
     agataagaac gtcgtagcgg atactttatc gcgcatagag acgatagatt gtcctacgcg      2880
     tatagattat gaagatcttg caaaggaaca aaaattagat cgcgagttat gcaaaagggt      2940
     agagtcgaca aaagatactt tacaatttag ggaaatattt ctaccgaact gtaaagtacc      3000
     gattatttgt gatatgtcaa cacaggtagc tcgaccgtat ttaactgaaa aatatcgtaa      3060
     gttagcgttt gaaagtatac ataatttgag tcaccctggc atgagagcaa cgaaaaaatt      3120
     gatcaaggat agatattatt ggcccgcaat gaacgcacaa atcgcgaaat ggacgaaaac      3180
     gtgtataagt tgtcaaaaag ctaaagtaca gagacacatg acctcagaat taggagaatt      3240
     tatgccaagt gctcgttttg aacatataca tgttgattta gtaggtcctc tgccgaccac      3300
     gtcagagggg cataggtacc tactgactat cattgataga gccacaggtt ggccagaggc      3360
     gtatcccttg aaagagatca ctgcgaaatt agttgcacaa gtaatttttg aaaattggat      3420
     tgttcgtttt ggttgtccta ttagacttac tacagaccag ggaagacaat ttgaaagcga      3480
     tttattttta caactaacaa agtttttggg tatagataaa atacgaacca ctccctatca      3540
     cccccagagt aatgggatga tagagaggtg gcataggtcg ttaaaagtcg ctttaagagc      3600
     acgattagac aataatacga gttggttaca agaattgcct ataatattat tggggttacg      3660
     cgcagttccg cgaaatgata cgaacgtcag cgcggcagaa ttaacgtatg gtctaaaatt      3720
     aagattacct ggcgattttt acgattgttc acattctaac ttaaattatg ataatgaata      3780
     tgttaatcat cttaggaatt tatttcagaa tcttagacca cgaaacgttc aacagagaga      3840
     ttctcgcacc atatttgtac atcctgactt aagtagttgc gatcatgtat ttattagaaa      3900
     tgacatcatg agaggatcac ttcaacctcc ttatttaggc ccgtacaagg tcataaagag      3960
     gggaagtaaa tcgttcaaag tagacatttt aggaaaaaat atcttagttt caattgatag      4020
     attaaaacca gcatatttgt tgaatgataa aatagttaag ttgaatcaaa gatgttcaga      4080
     tgagtacagt catgatatta aaattagttc tcaacctcaa agcagtcaac atgagtcacc      4140
     cacaaacatc gaaaagcctg tcacttatac cacacgtagt ggtcgtgcat caaaattgcc      4200
     agtaagattt ttaatataat tcgtattaag cattatctcc agctaaattt taatataaat      4260
     atagagagca aaagatttat tatacacttt tattgcaaaa tatcaaacag tgaagaaaca      4320
     caaataaatt taaatgggta aatcgtacag taaagaacaa gatattatta ttgcacaaaa      4380
     tggagcgaat agagccagta acagtgacac agaattacga aatgatttaa agttttatgg      4440
     aattctcatg ttaactgttt tgatactatt aacgttattg tttatctatt tctgtcttaa      4500
     gaaatgtaag aatcagtctc gagattgggt gcgaaggcaa gtaatgtcaa cacagttgtc      4560
     agcatcaaca ccttcaattg ttcctggtaa cttgcaacag gtacaacccc agcaaccacc      4620
     gcaggttgta tttgctcagt gaaatgtgtg aaaatgtgtc agtgaattag ttttgtgctt      4680
     atatttcgcg tatgtatgta ttgttgtcgt agtgtattgt tggcgttgtc gtaacggaag      4740
     ctgccggcct ataaggtgtt tattaattat tacagagtgg aagttacggc aactaccctt      4800
     aaataatata tttttttttg tatttcctct tctaggaata ctttaaagac ggactcttga      4860
     aaaatagatg tccgcaccct gtattttaag tagtatagaa aatataatta ccttgcattt      4920
     gcctagaagt tgattattat tgtaaaagta aattctaccc aattatttga cataccaaaa      4980
     ttgtaactta aaatcataac agattaaatt tcaatgtaag taatcagttc tcagaaaatt      5040
     atactttgta actttagtac tttgtttaca gtcacttagt tccagttact gttttgttga      5100
     attgcaaatt gtcagtataa atgtttttat ttcaacattg ttgttcacag aaggttttaa      5160
     tttctgctta tgttgtataa cggatgtatg ttgcaatgga taagaaacac aaaggtacaa      5220
     tgttattata atgtattaaa gattaagttt ttccttatat tctggaaatg tactaaattt      5280
     tttttaaaaa agagggggac cac                                              5303
//
ID   Gypsy-25_TrNi-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-288
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 182-182 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4 or 5-bp TSDs.
XX
SQ   Sequence 288 BP; 81 A; 58 C; 55 G; 94 T; 0 other;
     tgtagcggca tgaaatgtga tgcgttaatg tagcgaagtt gaccgcgagt aatatctgcc        60
     tgtccgcagt gcagtcgtct tcctccttcc gtagagctca cttgtgttta tagagctata       120
     tattatatgt attcgtgttt gggacaatat agtatcagtg aaagttaaat gacgttttct       180
     tccatatctc ttaatgagaa tacccctctg atctggacct tacatacaca ctaaagtaca       240
     tacttacatt aaagaccttt tcgctaaagt agtgacccta atgctaaa                    288
//
ID   Gypsy-25_TrVa-I repbase;    DNA;    INV; 6610 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6610
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 270-270 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1865
FT                 /product="Gypsy-25_TrVa-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MLFIPELLSKELIEYELAIRGDETRGHVLVCCKQLRS
FT                 LLEQGVEPDPKIIQGLDCNVELSCVEETFSRLVTLIEDFEIDPVFGRDKQI
FT                 LGRLEHLLRRLFYLKLYSPDCDLMEDLANLEYKLKTKLEEFKQFLAHNSDS
FT                 FLELSSAVLPVSASTFLPVSSQSVAVLSQNVSTPSVVSQAPIPSAAPWSLF
FT                 SDPISRPNVSVPNVASSLVTSSSVSIFSPPVPVTTSSVHFSRASDAHFARS
FT                 ICGPSFGQNVNLPSQPPASVFGTYELPRQPAISSSRLNPYAETFPVSSRFA
FT                 PASSSFNATLSQSTLLQNPRNFSKMPNPLERLLRSLPDSNGLDPEVLLKFL
FT                 EHVMIVRQTAGVSDQDLLAAILRYTRSPLSQCVIETLNLNLNFDAFHEKAL
FT                 DLLPPLIHRHIKHSSVDRFQRDGESFADFVHDIYSKALLVRDSRSEADLVQ
FT                 LVISNMHPDSAAHFVFQNPPRTFDDLHRLSRIAQDRVFAATQRANQGILFK
FT                 SALVSRPNVSQPSRHRVNVVESPAVFPPDISAPPPGFSGSSPVNSAQQNSR
FT                 DCYYCGFKGHMARNCPRRVNPKN"
FT   CDS           1796..5104
FT                 /product="Gypsy-25_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RLLLLWFQGSYGSELSKAGKSKKLISHLDFWSGTQVS
FT                 KGNAISDPLVYRIGVPKTAPLPHSVVQLGSLEMSSLIDSGSARTLISERTF
FT                 HLIRNSKCLKKIEKCNISCFTASHEPLEISRSVILHFKIQGFSWNFKFLVA
FT                 PNLHADMILGADFLRHSGLILDLHGNTFCFKFKCKNHFPISGYKPPICIEA
FT                 LSSFDVDCSNIENQCNTKTPELDETNGPDLSHLNSWEKRKVRRILEKYSSV
FT                 LTTDLGRCNLLDYDIVLKDRKLVHSTPYTLSPPKMEFLRQHIDKLLSLNVI
FT                 RPSKSSYASPAFLVPKGEKDFRMVIDYRKLNQQVDIEAVPLPDINTAFNWF
FT                 AKAKYFCVLDLNSAYHQISLSERSKAMTAFCVPFGLFEWERIPFGLATGAQ
FT                 VLTRLGNLLFSDLRFKNLVNFIDDYVLFAETFDELMDVLDTVLSRFQKAGI
FT                 TINPKKLQVAVQQISYLGHLFSLRGLEVDPERTRAIRDFKPPRDAKGIARF
FT                 LGMIQFYGKFISNLAERALPLNRLRKKGAKFEWGDEQQRAFEDLKLAIISP
FT                 PVLQTPDFSKEFILQTDGSGSALGAVLLQEVDGVRLPVAFASRTLTDQEQK
FT                 YSAYEIECLAVLFACDKFRIYLEHKEFLLECDNQALTWLLAHPRQLGRIGR
FT                 WIIRISALKFRVQHIRGTTNVCADALSRMFHQEDFEPPEINVVKISVPVFP
FT                 FAHDNLLQYQLEDPFLKEKITAANEGKDISPYLLKKGVVFCIDGRTNIPKI
FT                 VVPQALIPMIFQYYHCSVFGAHVGSFRTLQRIRTHFTYAGMASDVKRRVKA
FT                 CEICCLSKPAQNTRVGFLSSKVPSRPMEKMHIDFVGPLPRSKLGNQFLLTC
FT                 SDYFSKFVWLFPIRQATSVIAIKELKGIFQSFGFPESLVSDQGRQFTSDIF
FT                 ENFCFCLGIKHIVTPAYYPQANSAERVNRNLKSALIAYHHNSHNTWDENIP
FT                 WLQLSFNLAYHEGHKHTPFEIMFSFPASHPLALHWSLNDLLPSEPRDIEKV
FT                 WKDATKHLLNAHKKSEVRYNQSRQDHSFAVDDLVLLKAHNQSSKAKKFMAK
FT                 LAFRWNGPYRIQSFLSPVTLLLADPKTGETLKKAHVSQLKKFCETK"
XX
SQ   Sequence 6610 BP; 1587 A; 1235 C; 1321 G; 2467 T; 0 other;
     aatggtagcc ggatcgtggt tatgatttca tttctctggt tgggttttgt tccctttctt        60
     gttgttagtg tttgatttgt gtgtgtgttg tttggtgtga ctatcccctt gcttttccga       120
     taattctggt gcattgataa ttgcttagtg gcatcatgtt attcattcct gaacttttgt       180
     cgaaggagct catcgagtat gaattggcta ttagaggcga tgaaactcgg ggccatgttc       240
     tagtatgttg taagcaactt agatccctac ttgaacaagg agtggaacct gatcctaaaa       300
     ttattcaagg tttagattgt aatgtagaac ttagttgtgt tgaggaaacc ttttctagat       360
     tggtgactct aattgaggat tttgaaatcg acccagtgtt tggacgcgat aagcaaattt       420
     tgggtcgact tgaacatctg ttgcgacgtt tgttttattt aaagttatat tcgcctgatt       480
     gtgatcttat ggaagacctt gccaatctgg aatataaatt aaaaactaaa ttagaggagt       540
     ttaaacaatt tcttgctcat aattctgact ctttcttaga attatcatcg gcggtgttgc       600
     cagttagtgc tagtactttt ctgccagtta gttcacaatc tgttgctgtt ttgtcccaaa       660
     atgtgtccac accaagcgtt gtctctcagg cccctattcc atcggccgct ccttggagtc       720
     tctttagtga tcctatttct cgtcctaatg ttagtgtacc caatgttgcc tcgtcacttg       780
     ttacctctag tagtgtttct atctttagtc ctcctgtacc tgttactacc tcgtcggtac       840
     atttctctag agcttctgat gcccattttg ctcgatctat ctgtggtcct tcttttggtc       900
     aaaatgttaa tttacctagt cagcctcctg catctgtttt tgggacgtat gagttacctc       960
     gacaacctgc tatttctagt tctcggttga atccttatgc tgaaactttc cctgtgtctt      1020
     cgagatttgc acctgctagt tctagtttca atgcgacttt gtctcaatct actttactgc      1080
     agaatcctcg taacttcagt aagatgccaa atcctcttga acgtcttctt cgcagtctgc      1140
     ctgactctaa cgggttggac cctgaggttc tgttaaaatt tcttgaacat gttatgattg      1200
     ttagacaaac ggcgggtgta tctgatcaag atctattggc tgccatctta cgttatactc      1260
     ggtcacctct ttctcagtgt gttattgaaa ctttgaattt aaatcttaat tttgatgctt      1320
     ttcatgaaaa ggctcttgat ttgttgcctc ctttaattca tcgccatatt aagcattctt      1380
     ctgttgatag atttcaaaga gacggtgaaa gttttgctga ttttgttcat gatatttatt      1440
     ctaaggcctt gctagtgcgt gactcacgtt ctgaagctga tttggttcaa cttgtcattt      1500
     ctaatatgca tccggattct gctgctcatt ttgttttcca aaatccaccc cgtacttttg      1560
     atgatcttca ccgtttgagt cgcattgcgc aagatcgggt gtttgctgct actcagcgtg      1620
     ctaaccaagg aattttgttt aaatctgctc ttgtatctcg gcctaatgtt tctcaaccct      1680
     ctcgtcatcg ggtgaatgtg gttgaaagtc ctgcagtttt tccaccggat attagtgccc      1740
     cacctcctgg tttctctggt agttctcctg tgaattctgc tcaacaaaat tctagagatt      1800
     gttattattg tggtttcaag ggtcatatgg ctcggaattg tccaaggcgg gtaaatccaa      1860
     aaaactaatt tcgcacctgg atttctggag tggtacacag gtgtcgaagg gtaatgctat      1920
     ttctgatcct ttagtttatc ggattggtgt acccaaaacc gctcccctac ctcattctgt      1980
     tgttcagtta ggttctttgg aaatgtcaag tttaattgat tcaggcagtg ctcgtacttt      2040
     aatttctgag agaacttttc acttaattag gaattccaaa tgcctcaaga aaattgaaaa      2100
     gtgtaatata tcttgtttta ctgcttcgca tgagcctcta gaaatttctc gttctgtaat      2160
     attgcatttc aagatacaag gattttcctg gaatttcaaa tttcttgttg ctcctaatct      2220
     tcatgctgac atgattctcg gtgctgattt tcttaggcat tcgggtttaa ttcttgacct      2280
     tcatggtaat accttttgtt ttaagtttaa atgcaaaaat cattttccta tttctggcta      2340
     caaaccccct atatgtattg aggcactctc tagttttgat gtcgattgtt ccaatattga      2400
     gaatcagtgt aacacaaaaa ctcccgagtt ggatgaaact aatggtccag atctctcgca      2460
     tcttaacagc tgggaaaaaa gaaaagttag gcgaattttg gaaaagtatt cttctgtttt      2520
     gaccactgat ttagggcggt gtaatttgct tgattatgac atagttttga aggatagaaa      2580
     acttgttcat tccaccccgt atacactctc accccctaaa atggaatttc tgcggcagca      2640
     cattgataaa ctcctttctt tgaatgtcat tcgtcctagt aagagtagtt atgcttcccc      2700
     tgcttttctt gtgccaaagg gtgaaaagga ttttcgcatg gtgattgatt atcgcaaatt      2760
     aaatcagcag gttgatattg aagcagttcc gcttcctgac attaacaccg cttttaattg      2820
     gtttgctaag gctaaatatt tttgtgttct cgatttaaat tctgcctatc atcaaatcag      2880
     tttgtctgaa aggtccaaag ccatgacagc attttgtgta ccttttggtc tctttgaatg      2940
     ggaacgaatt ccgtttggtc ttgccaccgg agctcaggta cttactcgac ttggcaattt      3000
     gcttttctct gatttgcgtt tcaaaaatct tgtaaatttt atcgatgatt atgttctttt      3060
     tgctgaaact ttcgatgagt tgatggatgt tcttgatact gtcttgtcac gttttcaaaa      3120
     ggcgggtatc accatcaatc caaagaaatt acaggtcgct gttcaacaga tttcttattt      3180
     aggccatctc ttttcgcttc gaggtcttga agtcgatcct gaacgcactc gtgcaattcg      3240
     tgatttcaag ccacctcgag atgcaaaggg aatcgcccgt ttcttaggaa tgattcagtt      3300
     ttatggaaaa tttatttcaa atttggctga gcgcgcctta cctcttaatc gactccgtaa      3360
     aaaaggagca aaattcgaat ggggtgatga gcaacaacgt gcttttgaag atttaaaatt      3420
     agctatcatc agccctcctg ttcttcaaac tcctgatttt tcaaaagagt ttatacttca      3480
     aactgatggc tcaggctctg ccttgggtgc agtcttactt caagaagttg atggtgtgcg      3540
     tcttccggtt gcttttgctt ctcgcacttt gactgatcag gaacagaaat attctgcgta      3600
     tgaaatcgaa tgtctggcag tgcttttcgc ttgtgataag tttcgtatat atcttgagca      3660
     taaggaattt ctcttagagt gtgataatca agctctgaca tggctgttag cacatcctcg      3720
     tcagcttgga agaattggtc gttggataat tagaatttca gctcttaagt ttcgagtaca      3780
     gcatattcgt ggaacaacta atgtgtgtgc tgatgcatta tctcgtatgt ttcatcaaga      3840
     agatttcgaa cctcctgaaa ttaatgttgt taaaatctct gtcccggttt tcccttttgc      3900
     tcacgataat ctactccagt atcaattaga agatcccttt ttgaaagaga agattactgc      3960
     tgccaatgaa ggtaaagata tttctcccta cctccttaag aagggtgttg ttttttgtat      4020
     tgatggtcga actaatattc caaagattgt tgtaccccag gccttaattc ccatgatctt      4080
     tcagtattat cattgttcag tgtttggtgc tcatgtaggt tctttccgaa ctcttcaacg      4140
     tattcgaacg cactttactt atgcaggaat ggcttctgac gtgaaaaggc gtgttaaagc      4200
     atgtgaaata tgttgtctca gtaaacccgc tcaaaatact cgtgtggggt ttctctcttc      4260
     taaagttcct agtagaccta tggagaagat gcatatcgat tttgtcggac ccctacccag      4320
     gagtaaatta ggaaatcaat ttcttctcac ctgttcggat tatttctcca agtttgtgtg      4380
     gcttttccct attcgtcagg ctacctctgt aattgcaatt aaagaattga aaggaatctt      4440
     tcaatcgttt ggttttcctg agtcgttggt gagtgatcaa ggtcgccaat ttacctctga      4500
     catttttgaa aatttttgtt tttgcctcgg cattaaacac attgtcactc cggcgtatta      4560
     tcctcaggcc aattcggctg aaagggtcaa cagaaattta aagagtgcat taattgctta      4620
     tcatcataac agtcataaca cctgggatga aaatattcct tggctgcaac tctcttttaa      4680
     tctcgcatat cacgaaggtc ataagcacac cccttttgaa attatgttct cgtttccagc      4740
     gtctcatcct cttgctttgc attggtcact taatgatctt ttaccctccg aacctcgaga      4800
     tattgagaag gtatggaagg atgcaaccaa gcacttgttg aatgcccata aaaagtcgga      4860
     agttaggtat aaccaatctc gtcaggatca tagtttcgct gtagatgact tggtcttact      4920
     gaaggctcat aaccagagta gtaaggcgaa gaaatttatg gcgaaattgg ctttcaggtg      4980
     gaatggtcct tatcgtattc aatctttttt gtctccagtg acgctacttc ttgcggaccc      5040
     taaaacgggt gaaacgctga agaaagcgca cgtcagtcaa ctaaagaaat tctgtgaaac      5100
     aaagtgaaga attcaaaatt ttttgatttg gctttgtttc tgtgtatatt taaggtgtgt      5160
     gtaaaatgta tcaaaattca gtattttgga aggttgtttc ctgtactgta gattttctgt      5220
     gctctctatt tatgtgattt tgtgtaggaa atttttgagt accattttct tttcttgttt      5280
     gcactaacca tttccatgga gtgttgttga attcttgttt cctctaatat ctcctttgtg      5340
     agattgtttt tgatttattt tgttgccccg ggttttcctg gtggctacct tactgtgagt      5400
     tgtatctctc tcccgaattg tgtctgattc attattatgg gtattgaatc attattatgg      5460
     gtatactgtc gcgaggtatc tccctggaaa tgttttcgcg aaacatttcc taaaacggat      5520
     gtgtctttag atattatttt aggttagtat aatttcgcaa tgggattttt ctatccaatt      5580
     gctctgtact ccttagttga ttagtttaac ttttctttag gtttatttcc tctttcccga      5640
     gtagttggta atattagtgg tatgatttcc ccttttgaat agtgttcaat tattctcatc      5700
     ttttatggta ttatataata ttattttttt taaaaaaaaa attaggcttt ggttgtgtct      5760
     taaaatgaat aggaattttc atctaccgat ttgtggaaaa aaaaaaaaaa aaaaaaaaaa      5820
     aaaatatata cacttggaat ttgattcctg tgttagccca tcgtttagta agatctgtct      5880
     gcatgtgaat gtggattttg atcgtcttgt tccttgtgtg tactttacta ggtgtttcat      5940
     cgaatgagtc ccaaggaaca ttttgtcatc ttttgtccct ctggatttgg attttgaaga      6000
     ggtgtttgtc cgagagcctc tcacagtaaa atttgttatt tttgttttct ctttttgctt      6060
     tctggcttcg aatcagtgac ttgtttcctc ctagtgagta agtctctaac aagaacactg      6120
     attgctgcct tgtgtattta gatacgaaag gtgttcgttt ctttgtgtgt ttgaattatt      6180
     ttgtcccggt ttcttgccta aatctactcg cttttccttt tggataacgc tagcgagaag      6240
     gatttaggtg ttgtaagttt attgatttgt ttcctttctg ccatttatat ggtgtgattt      6300
     ggttgtgatt ttttgtgttt gtattttcct cttggtggaa taattagtgt ggattttact      6360
     tttccccttg gggatattct agtaaatttc ctacgctacc ttgtattttt gtgccctctt      6420
     attggtacaa gtttttcaac agcctatgta gtcgaaccag gaaagttatg tggtactctt      6480
     taattgtcag ttatgttttt cgtgtgcgtt accttatttc tgtaagtact tttagtattt      6540
     tgttgttgtc tgtggatctg gttaatgaat gggtgtttct tttggatggt tgtcgttggg      6600
     gggaggagcc                                                             6610
//
ID   Gypsy-25_TrVa-LTR repbase;    DNA;    INV; 2392 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-25_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2392
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 329-329 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2392 BP; 539 A; 463 C; 439 G; 947 T; 4 other;
     tgtgccgatt ttcggaacaa ttatttgtat tcatgtgtga aaactcatca gcggcatcca        60
     tccgagggaa agaccggttc attttcgcga gttatccgtt tcctctttac gctctatcct       120
     cgatcactct cagggcggag cggcggaaac gccgatttgt tctagaaggt tctagaaggt       180
     tctggaagct ttcctagcgg aagccaggcc ttgtgtaacc aagcgttctt cattcgagtg       240
     gtctctctcc agcgtgccgg ttggacactg gagagagagc tcccgtctca ctttgtgctt       300
     cgtgtctgaa tgttgtttaa gtactccatt ttaactgtat caggattttm gtctacgttt       360
     ctcttttgat acctttgctg aaatacattg agcgattgaa ttctccatcc ccagtattgg       420
     gtaagttatt tttgatttgt tttgagtgac ttttctcttg tggttttgtc gagtctttgt       480
     cgtattcatt gccaaggcac gtgctaccat ttcccttttc tgttttcata tttctctctc       540
     tctcttgcca gagcacgaag gaaaacttct cttgttaatt attgtttatg agatctgaaa       600
     ttgccttttt aaattcattg ccgaatattt aacgagccct tctggccttg acgacactct       660
     gtctcaaatc aaccwcctgt acgattgcat ggaggccttc tgccgtccat tgctgcattt       720
     taatctctct ttctcgtcct ttcaaacccc tttcaatgtc ttaacttgtg taacctttat       780
     tttcaggcaa aacgtaattt ttctcttttc tcaggtgtaa ctttaaaatc cttgtaggct       840
     ttattttagg ctttcaacca tgtgctttct cttactgatt gccttttctt tttccaagtt       900
     gtctcttaaa gacgaagcat tttctcatta gatctcagct catttctctt taatattttc       960
     ctattttgta aagtgcctcc gttttcttaa aatctaaatt gttaaccaga aatggaactt      1020
     tgttgaaagg cttaggccat gaggctaatc tcaaattctc aaatcaaaag attgttagtc      1080
     aattcaatta tttctagcca agagctcatt catctgctgt gtgttttcta ggttatctaa      1140
     gttatttctg tgttattatt ttttgcttgg aaattgtttc atacagggtc gctgtcgctg      1200
     ttacagtcgc kgttacagtc gctgttgcaa tcgctgtttg cagtctctgt tcgtacctgt      1260
     actagatggc tgatttggcc tacttcatgt tttatgttcc tgtkctgatc taccccttta      1320
     tgtctggata atttatcttt ggatttctac gtcttgagcc gtttcgctcg attaatgata      1380
     tacgcctctt ggatgtcttc aacgatttaa atctacgctt cgtaaccgat tggatataag      1440
     tgaatctacg cttcaaaacc gtttggatta gttctacgtt cttcgtttat ctccacatca      1500
     tcatctctgg atttattaac gtgagctaga ttttactatt tatttacatc tttaccaacg      1560
     gatatttctg atatgaagtc ataatcatct tggtctaata gtcattcgag aaggcgttaa      1620
     tcaggttttg gtcatcggct gcggccacta agtaagaccc taaccgttcg gcgacgcagg      1680
     tttttatcca gcatatatat tttcttgaaa tttaaacttt tgtcccccct ttttgttttt      1740
     gtaatatgtg tgagtatgtg tgtgtgagtg tgtcaggaat tgtgtaattt tcctataaat      1800
     tgaaatcgtc acgttattct agtcaactac gtattggcca tgtgcttatt tactctattt      1860
     aatgtatccg attgcggtgc aactaaaatt ttgatttaaa gtaaagaacc cgcagatttt      1920
     tcctgttggg tctgtgagag tttttgaccg agttactttt gttaatctca cccgactgat      1980
     ttaagaattt ttcaagcgac aagtttcatt gcgctaaata atattttcat ttgacggatt      2040
     tcattgtacc ttatgcggtg caaacttttt atttaatatt tgatctggtg atcttgtgtg      2100
     tgtgtgtatt attgttgtgt gtatgacagt acaaaagact gtttgttaat ctcatccttt      2160
     tgatttataa aacttttgtc aagcgacatg tttgtccgct cgattgaaat taattttgac      2220
     ggagcactca ttttgtgtct gtaactttgt gatattatta ttgagctgtg atactttgaa      2280
     catttgaata gaattttgta aaagttctcc ttgttgcttt tggcatttat tttccttgtt      2340
     gtttttccct ttttctctta tttataagtg acaacagtaa agagttgtta ca              2392
//
ID   Gypsy-26-I_NVi repbase;    DNA;    INV; 15180 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.05, Created)
DT   08-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-26-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-15180
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 988-988 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2313..6836
FT                 /product="Gypsy-26-I_NVi_2p"
FT                 /translation="REYSKSRAKSNRNQGKQGAKSRTKTRQNRRNKKSKSR
FT                 RKWREYSKSRAKSNRNQGKQESKSRTKARQNRRNNNLNQEENGENILNQGR
FT                 XQVEIKENKELNQEQIRDKIGEIKNRNQGKNRHDISETSNRSQGRIQVEIG
FT                 KNKNQNQEQKQVEIGEDKNLNQERIRDKISKNENQNREQNRELIREQNQAR
FT                 IEGLNPEEKLNQERNHGTAKNLNRSEDEIGYIKTILEQNRSKKLNELEKTG
FT                 RENSTEKESALKKLEAILRDAERVIKKEVQVEEIIFNMHTKAISVILSLNS
FT                 LTGYSSEGTRIALEKILDAIRLGTWREAKFHGILEKAHEQLSKTRRDLQNE
FT                 RVEACVYCQPVPTINNDRIKKVSEQLRLEHISEGEKTRVRRLVEEFHDIFH
FT                 VEGEKLSKTPLLKLTIPTVDEVPVSTKPYRRSPEEREEQERQIAELLKDGI
FT                 IEKSTSSFCSPCFLVPKKPDSKGVVKFRLVIDYSKVNAKTLNDQYPMQNIL
FT                 DILDQLGGAKYFSVFDLKSGYHQIEIAEEYRHKTAFATQSGLYHFTRGSFG
FT                 LRTMPATFSRALAIALAGLTGSELFIYMDDIIVHSDSFEQHLERIRHLFER
FT                 LREHVLKLQADKCEFLKKEVAYLGHIISEAGVKPDPRKIEAVKEYPAPRNK
FT                 KNIKQFLGFVGYYRRFIDKFANIAVPLTEMLKNDAEFVWTEKAQKAFEILR
FT                 DKLCEEPILTFPDFNKPFTLVTDSSGYALGAVLLNGEPGKEHPVAYMSRTL
FT                 TEAERKWDTYNKEANALVSAIKHFRPYLFGRRFDLITDNIALQWLRTHRDP
FT                 NSRVNRWRLLLAEFEFNIIYKPGKTNIADALSRNPVEKAINIVAAEDINQS
FT                 QSDNSADDAAGGKPARGKDTAPTHTMQTRGRGGRLQGTKYKEAIAALAPRK
FT                 RRPKENRSKERVEKDISGESQEESPEIKQTTARGQNDDEQLGSEELGIETT
FT                 GTRQDSNEGEVQSESDIRETQQGTDESESGDPGEGAEPLNTTKNGSQRDTQ
FT                 NSEEAITCREQMFMRKDNFMYFISTKGEPCDEGARQLKIMGKLPMFARLQV
FT                 GIPASIRVNNKTHIALPLRDEARIGPTLTRHNIEILCTNLTPFLKQADLKS
FT                 ISIAKTERIEELEWRDAIKPLKDSFARSHTKLIICLGLIKYPLAEDRETII
FT                 KAAHASIVGGHRGVTKTYKRIKQNYYWENLKEEIQAFVRKCLDCQLKKLVR
FT                 IKTKLPMVITDTPTVSMEKLAMDVVGPLPPTDSGNEYVLTFQDNLTKFAIA
FT                 EPLGDITAATVANVLIRKVICVFGAPRVILTDQGTNFLSKLMKRVAKRFRI
FT                 KQVKTTAFHPQSNGSLERSHSSLMEYVKFFVQKNKRDWDEYIDLATFNFNT
FT                 SVSEATWHTPFELVFGRLARTPEEGELEEEDLLPTFNGYMRELVTRLNSLQ
FT                 ATARENSIKAKERAKQYYDRRVNIKTLQIGNHVWLLSGPKPHKFEDQYKGP
FT                 YTVLDVSPNGNVKIQISATKEKIVHANRLRMSHVENKNDKAK*"
FT   CDS           11105..12601
FT                 /product="Gypsy-26-I_NVi_3p"
FT                 /translation="MNQMYLMQDKILQLNKMAITFESIKGPYDIRTHKHGG
FT                 KDFELLEGEGINNLILLEDMRRNRKEELSQPADRKTVIENELNEEINTLER
FT                 KKHTLMTRLGLNEEDETNTVEXEQEPSIDETIQVLNENLELASKLITIMQI
FT                 KEYGLSTRTMRNALARLQRTEGQALATPFESINQGTIREYGTVEMYLLQRQ
FT                 LIIQVNIPLVTEQVYRTYELVSIPVFDPLELPRHTAIKIVPRGDYLVINPD
FT                 NNEHFFMSKEERGECLKVHRVRICKANRELKRGMDCESTLKADPESYRAHN
FT                 LCKRTLIHGPEYYLIRTQNPARWIFSTAGRVNGTGMCQEEKQSVTLEGSGE
FT                 VKIPEGCHLRIADSIFYGGADQDEREIFIPHVHLTAASTLWADKRPEAIPQ
FT                 VVRTGTTGVAGNTTITIMTVIIGIFGTMVSLLIVVGIRSLKGRNRQEEPEA
FT                 IYVPMRGLDPTIRCEFHGPHARAEKVYDVPRVPAMQVRENALSAIIEERTE
FT                 SG*"
FT   CDS           join(69..989,955..1716,1602..2273)
FT                 /product="Gypsy-26-I_NVi_1p"
FT                 /translation="MALGGPNKVDEALRILEVNAKALEPDVQRDDWDIKKY
FT                 ATYFRELKXKCSTKKPQSTMIQTRAAICDALEAELDREEIEKTVNCSTLVN
FT                 VVGDFIAARVNPTSLIKFLAGDDEEDLTYIPELILRAEITEDYQTLGLPSN
FT                 TMSFYENLNKTGHSSNKQINPDAVEVKKFQFSTPRINTFRPRENLLQSSAD
FT                 AYNNASVSVLHSKAAEKVMRDLPRFDGKNIPVHVFVLRLQQAANALTTEGE
FT                 LELAKVIYSKLDGDAYNSTINKTFRSVREISKHLESTFGSGKSTDELLGEL
FT                 AKIRQKKGRKSRYLFGKKKGEKVVTYSNRIRILDVNIKAAANMERKATPSF
FT                 NAELSRKLIYYFKKGLDWPISTRLGEFNDVNEAIIHAIEIERDFACYQENQ
FT                 DQKNNTAQICVVNPQAIEKCQICSNKGHTAQKCWYRNQIPNNETVRSPVRP
FT                 QTNPREGPNNSAMQDARQTPWRSQPPPRTTPQNQGEQYVHRQRVTFPNENA
FT                 RAENKPTCNYCKKEGHFIAECRKREYNNKMRETQGNEAGQSYQGAGRTTES
FT                 RPRPTQGFNRREQQQQDARNAGKRSGSIVSGCGTNDRKQAAPDAGIQPPRA
FT                 TISISEVKLSLCAKSPSIKLINPLNGREIVLILDSGAGPNLLKESECIEGV
FT                 KINENAIIKLRGITAGVTQTLGTITLYFAHFKIEFHLVNNDFPIKENGLLG
FT                 CDFFAQSGASIDYKNNCLKIGEHMIAFTNEVREEITEIELSEKTETEHKET
FT                 ERSALITKNSNQITLGGIKNLNQGENRENIGSX*"
XX
SQ   Sequence 15180 BP; 5595 A; 3148 C; 3450 G; 2954 T; 33 other;
     gaaattgggg gccccttccg gtcttggttt ttactattag aagcaagcgc gattagatca        60
     acggaatcat ggcgttaggc gggccgaata aagtagacga agcattacga attttagaag       120
     taaacgcgaa ggcactagaa cctgacgtac agagggacga ttgggacatc aagaaatacg       180
     caacatactt tcgcgaacta aaartaaagt gttcaaccaa aaaaccgcag tcaacgatga       240
     tacaaacgcg cgccgcgata tgcgacgctt tagaagcaga actcgacagg gaggaaatcg       300
     aaaaaacagt caattgcagc accttagtta acgtcgtagg ggatttcata gcagctcgcg       360
     taaatccgac gtcgctaatt aaattcctgg cgggcgacga cgaggaagac ttaacgtata       420
     taccggaatt aattctcaga gcagaaatta cggaggatta tcaaacatta ggccttccaa       480
     gcaatactat gtctttctac gagaatttaa acaaaacggg acattcatcg aataaacaaa       540
     taaatccgga cgcagttgaa gtaaaaaaat ttcagttttc gacaccgcga ataaacacct       600
     tcagaccgag agaaaactta ctacaatcga gcgcagacgc atataacaat gcgtcggtaa       660
     gcgtcttaca tagtaaagcg gcagaaaaag tgatgcgaga tttaccgagg tttgacggaa       720
     aaaacatacc wgtgcacgta ttcgtgttgc gcttacaaca agccgcgaay gcgcttacca       780
     cggaaggaga actcgaacty gcaaaagtaa tttactcaaa attagacggc gacgcataca       840
     actcaacaat taataaaaca ttcagatcag taagagaaat tagcaaacac ctcgaatcaa       900
     cattcggwtc gggaaaatcr acggacgaac tactcggaga actcgcgaaa ataaggcaaa       960
     aaaaagggag aaaaagtcgt tacttattct aatagaatcc gaattttgga cgtgaacatc      1020
     aaggcggcag cgaatatgga aagaaaagcg acgccaagtt ttaacgcgga acttagtcga      1080
     aaattaatat attatttcaa gaaaggacta gattggccaa taagcacgcg gcttggcgaa      1140
     tttaatgacg taaacgaagc aattatccat gcaatagaaa tagagcgtga tttcgcatgc      1200
     tatcaagaaa atcaggatca aaaaaataat acggctcaaa tttgcgtagt aaaccctcaa      1260
     gctatagaaa aatgccaaat ctgtagtaat aaaggccata cagcacaaaa atgttggtac      1320
     agaaatcaga ttccgaataa cgaaaccgta agatcaccag tccgaccgca aacgaacccg      1380
     agggaggggc ctaacaatag cgcgatgcag gatgcgagac agacgccatg gcgaagccaa      1440
     cccccgccgc gaactacgcc ccaaaaccaa ggggagcaat acgttcacag acaaagagta      1500
     actttcccga acgaaaatgc gcgcgccgag aacaaaccca catgcaatta ctgcaagaaa      1560
     gagggccact tcatagcaga atgtagaaaa agagaatata acaacaagat gcgcgaaacg      1620
     cagggaaacg aagcgggtca atcgtatcag ggtgcgggac gaacgaccga aagcaggccg      1680
     cgcccgacgc agggattcaa ccgccgcgag caacaataag tatcagcgaa gtaaaactca      1740
     gcttgtgcgc gaaatcacct tcaatcaaat taataaatcc actaaacggc agagagatcg      1800
     tgttaatatt agactcagga gcaggaccga acttattaaa agaaagcgaa tgcatagaag      1860
     gcgtcaaaat taatgaaaac gctataatta aattaagagg catcacagca ggagtaacgc      1920
     agacgctcgg cacaatcaca ttatacttcg cgcattttaa aatagaattt catttggtga      1980
     acaacgattt tccaataaaa gaaaacggac tgttggggtg cgactttttc gcacaatcgg      2040
     gagcaagtat cgattacaaa aataattgct taaaaatcgg agaacatatg atcgcgttca      2100
     ctaatgaggt aagggaagaa atcacggaaa tcgagttgag cgaaaaaacg gagaccgaac      2160
     acaaagaaac ggaacggagc gcgctaataa caaaaaattc aaatcaaatt actctagggg      2220
     ggataaaaaa tctaaatcaa ggagaaaata gagagaatat tggrtcaara taatattcta      2280
     aatcaagggc gaaatcaagt cgaaatcgat agagagaata ttctaaatca agggcgaaat      2340
     caaatcgaaa tcaaggaaaa caaggagcta aatcaagaac aaaaacgaga caaaatcggc      2400
     gaaataaaaa atctaaatca agragaaaat ggagagaata ttctaaatca agggcgaaat      2460
     caaatcgaaa tcaaggaaaa caagaatcta aatcaagaac aaaagcaaga caaaatcggc      2520
     gtaataayaa tctaaatcaa gaagaaaatg gagagaatat tctaaatcaa gggcgaawtc      2580
     aagtcgaaat caaggaaaac aaggagctaa atcaagaaca aatacgagac aaaatcggcg      2640
     aaataaaaaa tcgaaatcaa ggaaaaaatc gacatgatat cagcgaaacc agtaatcgga      2700
     gccaagggcg aattcaagtc gaaatcggaa aaaataaaaa tcaaaatcaa gaacaaaagc      2760
     aagtcgaaat yggagaagat aaaaatctaa atcaagaacg aattcgggac aaaatcagca      2820
     aaaacgaaaa tcaaaatcga gaacaaaatc gggagctaat ccgagaacaa aatcaggcga      2880
     gaatcgaggg actaaatccg gaagaaaaac taaatcagga acgaaatcat ggcacagcca      2940
     aaaatctaaa tcgaagtgag gacgaaatcg gatatataaa aacaattcta gaacaaaatc      3000
     gaagtaaaaa attaaacgaa ctcgagaaga cggggagaga aaattcaaca gaaaaagaaa      3060
     gcgcgcttaa aaaactggaa gcaatcctga gagacgcgga acgggtcata aaaaaagaag      3120
     tgcaggtaga ggagattatt tttaatatgc acactaaagc aataagcgta atcctaagcc      3180
     tcaacagcct aaccgggtac agctcggaag gtacaaggat agcactagaa aagatattgg      3240
     acgcaattag gctgggcacc tggcgagagg cgaaatttca cggtatttta gaaaaggcgc      3300
     acgagcaact gtcaaaaacg cggagggacc tgcagaacga acgggtagaa gcatgcgtat      3360
     actgtcaacc cgtcccgacc ataaataacg acaggataaa gaaggtgtcc gagcaactac      3420
     gcttggagca tatttccgaa ggagaaaaaa ccagggtacg gaggttagtg gaagaattcc      3480
     acgacatatt tcatgtagaa ggggaaaaac tgtcaaaaac accgctactt aaattaacaa      3540
     tacctacagt cgacgaggta ccggtatcga ctaagcctta tcgacgctca cccgaggaga      3600
     gagaagaaca ggaaagacaa atagccgaac tactcaagga cggcattatc gaaaaatcca      3660
     cgtcatcttt ttgcagcccg tgctttctag ttccaaaaaa gcctgactcc aaaggcgttg      3720
     ttaaattcag actagttatc gattacagta aagtcaatgc taaaacactg aatgatcaat      3780
     atccgatgca aaatatactt gacatcctcg atcaactcgg gggagccaaa tatttttcgg      3840
     ttttcgattt aaagtcgggt tatcaycaaa tagaaatagc agaagagtac aggcacaaaa      3900
     cggcatttgc tacgcagagc ggactatacc attttacgcg cggcagtttc ggtctacgca      3960
     caatgccggc gacattttcg cgcgcgctcg caatagcact ggcaggcctt acaggtagcg      4020
     aactcttcat ttacatggac gacataatag tacattcgga ttcatttgag caacatttag      4080
     aacgaatcag gcacttgttc gaaagattaa gagaacacgt attaaaatta caggcagata      4140
     aatgcgaatt tttaaagaaa gaggtagcgt atctcggaca cataatctcg gaagcgggtg      4200
     taaaaccgga ccctaggaaa atagaagctg taaaagaata tcccgctcct cgcaataaaa      4260
     agaatataaa acagttcttg ggctttgtgg gctactacag gaggttcatt gacaaattcg      4320
     caaatatagc agtaccgtta acagaaatgc tgaaaaacga cgcagaattt gtatggaccg      4380
     aaaaagcaca gaaggcgttc gaaattctgc gcgataaact gtgcgaagaa cctattttaa      4440
     cattcccgga ttttaataaa cctttcacgc tagtaactga ctcatcgggg tatgcactcg      4500
     gagcagtgtt gctaaacgga gaaccgggaa aagaacaccc ggtcgcatat atgtcacgca      4560
     cattgacaga ggcggaaagg aaatgggaca catataataa agaagcgaac gcgctagtat      4620
     cggcaatcaa acatttccgg ccgtacctat tcgggagacg tttcgacttg ataacggata      4680
     atatagcgct acaatggctg cgcactcata gggacccgaa ttcgcgagtt aacagatgga      4740
     gattattact cgcggaattc gaatttaaca taatctataa accaggaaaa acgaacatag      4800
     ctgacgcgct ttcaagaaac ccggtagaga aggctataaa tatagtggcg gcggaagata      4860
     taaaccagtc acagagtgac aattcggcgg acgacgcggc aggaggcaaa ccagcccgcg      4920
     gtaaagacac cgcgccaacg cacacaatgc agacgcgcgg tcgaggcgga agactacagg      4980
     ggacaaaata taaagaagcc atagcagccc tagcaccaag aaaacgcagg ccaaaagaaa      5040
     accgctcaaa agaacgggta gaaaaagata tttcaggaga aagtcaggaa gaaagcccgg      5100
     agataaagca aaccaccgcg aggggtcaga acgatgacga gcagctggga tcggaggaac      5160
     tcggaatcga gacaacgggg acgcgacagg actcaaacga gggggaggta caatcggaga      5220
     gcgacattag ggaaacgcaa caggggaccg atgagagtga aagcggcgac ccgggagaag      5280
     gggcggaacc cctgaacacg actaaaaatg gaagccaacg ggatactcaa aactcggagg      5340
     aagccattac gtgccgagaa caaatgttta tgcggaaaga caacttcatg tactttatct      5400
     caacaaaggg agagccttgc gatgaagggg caagacaatt gaaaattatg ggaaaattac      5460
     cgatgttcgc acgattacag gtcgggattc cagcgtcgat acgcgtaaat aataaaacgc      5520
     atatagcgct tccactacga gatgaggcgc gaatcgggcc gaccctgaca cgacacaaca      5580
     tcgagatttt gtgcaccaat ctaacaccat ttctaaaaca agcagactta aaatcaataa      5640
     gtatagcaaa aaccgaaaga atcgaagaat tggaatggcg cgacgcgata aaaccgttaa      5700
     aagactcatt cgctcgctcg cacactaaac tgataatttg tttgggactt ataaaatatc      5760
     cattggcgga ggatcgcgaa acgataataa aagcggcaca cgcgtcaata gtcgggggac      5820
     accgcggcgt gacaaaaact tataaaagaa ttaaacaaaa ctattattgg gaaaatttaa      5880
     aggaagaaat acaagctttc gtgcgaaaat gtttagactg tcaattaaag aaattagtta      5940
     gaataaaaac aaaacttcct atggttatca cggacacacc aacagtaagc atggaaaaat      6000
     tagccatgga cgttgtaggc cctctacctc ctacggatag tggcaacgag tacgtactaa      6060
     cgtttcagga taatctgaca aaattcgcga tagcagaacc actgggagac attacggcag      6120
     caacggtcgc gaacgtacta atacggaagg tcatttgygt ttttggagca ccgagagtaa      6180
     tattaacgga ccaaggaaca aattttctta gcaaactaat gaaaagagta gcaaaacgat      6240
     ttagaattaa acaagtaaaa acgacagcgt ttcacccgca gtcgaacggg tcactcgaac      6300
     gctcgcattc cagcttgatg gaatacgtga aatttttcgt gcaaaagaac aaaagagact      6360
     gggacgagta tatagactta gcgacattta attttaacac cagtgttagt gaggccactt      6420
     ggcacacgcc gttcgagctc gtattcggaa gattagcgcg cacgccggaa gaaggcgaac      6480
     tcgaagagga agatttacta ccgaccttta atggttatat gagggagctg gtgactcggc      6540
     ttaatagtct ccaagcaacg gcgagagaaa actcgattaa agcgaaggaa agggctaaac      6600
     aatattatga cagacgagta aacattaaaa cgctgcaaat cggaaatcac gtgtggctat      6660
     taagcgggcc gaaaccgcat aaattcgagg atcaatataa aggaccgtat acagtgctcg      6720
     acgtgagccc caacgggaat gtaaaaatac aaataagcgc gactaaagaa aaaatcgtac      6780
     acgcgaacag gctacgcatg tcgcatgtag aaaataaaaa tgataaggct aagtagaatt      6840
     agaaccacga catagtcgta tgcacctcgc aagtaatgca tggaaaagca cagtaaaatt      6900
     catccacatt cagcgcaaac cataacaaaa tcaaacacgc tatacacgcg ccataatggc      6960
     ggacgcgcat acgcttactt aagaaaatat tcgactacgg aagaacacaa gcttcaaaat      7020
     ttttctttgc tgccaactta cacacaraca gacaaaaaac aacaaacaaa atgaacacag      7080
     aaaccagcaa gccgttcctg caaacaacaa gcatgcatgc aattcgtttt acgtaaatgt      7140
     aataaaaaaa aacaagcatg tcgtttaatg aaccaattac aatgattaca gatgataaac      7200
     atttggattt tgtggctaac agcaatttct caacttttca tcgggggtgc cgcgataata      7260
     gcatacgact gttcgcagca agtctctaat ttaacaacct tctcgctaat taacgtcgga      7320
     gaatgcgata tagaaatgcc ggtagtaaac acaacgcgag tattcgtaaa actattgcaa      7380
     ctaaatgaat ttacgaacac gcacgtaaga ttctgtaaag tagaaataaa gagaacggca      7440
     agaacctgcg gcgcattttc gcactcaagc gacgtgttta gaggcgaggt caagttcctc      7500
     gacgagataa cgggagaaga gtgcaaaaca atgcataggc atcgaacaca caggtttcgc      7560
     gatgagatga ttactaactt aaaaataaac gcgactacgg tgcacccgat gaccttcgcg      7620
     ggaaaaatag atcacgcagg gaattgcgaa caagcaggca cgtacatgga cccatacggg      7680
     gtatacgaca aagtagtagt ttcaggatay ctcaaaataa cgttaaaaga atacgaagca      7740
     tcagttaatt taaatacgaa cgaaatagtt ttgagatcag gaacgaggtg cacacttacg      7800
     caagaccaat gtatagactc ggaagacgga tacgcgtttt gggacccggt accnccaacg      7860
     acatgcgagt tcaataaata cgcggagtta tacgcaggcg aagtaaataa agttacggag      7920
     gaaggaaacg cgcaaagacc ggtgtatatt atggaatcat cgcaagtcac gttcgcgttt      7980
     acagcggtcg gcacagtaaa cgtatgcgga tacgaccttg tacgtacaga acacccaaaa      8040
     ttattatttt tagaaggtct gcaaacagaa tactttcgaa ctgtaaaagc tccgtcagta      8100
     aataatttag acatattcgc gtatgttaat tcgaaaaaat aaaaaaaaga gcggctacat      8160
     agggttagta gcgggcgaag tagtacactt aatgaaatgc gtgcaagtgg aagtacaccg      8220
     gagggaagaa agcacttgct atcaggaact acctgtaatg aaagacgaca aaaaatactt      8280
     tttaactccg cgaacgcaca ttcttaaaac tttcgggaca gaaactacat gtaatccatt      8340
     aattccgcct atgtttcaac tagagaatga atggtacacg gtgctaccag ggtcggtaac      8400
     aaagggaata acaccaaaca cgctaaaacc aaaaacaaaa ccgacatgga attacacgga      8460
     ccccgcgaac ctcgcgaaaa gcggaatata cacgccagcg caaatacaag cactgcgaca      8520
     tcacctttga ctcattgcac tctttgcaac agttttacga tcacttaatg ttcccggtcg      8580
     aaaagccagc agtgcttaat tcaatcgcga tgagcatgtc gggcagaagc tctagaatgg      8640
     acggactatc agtcacgaga ctgttcgatg agaacgctat ggcgagactc gcggaatcaa      8700
     catggggtag aatatgggga aagttttttg acgttcggct cggcttcggc tgggataatt      8760
     ggcttgttta tgatagcgag actcattaaa ttcgtggctg acacaataat tcacggttat      8820
     gctctacatt ctatatacgg attctcaatt tacattttag gaagtttctg gaactcggta      8880
     acacaattac tgttgcattt gggatcgcga aaggagaaat cagaaaaaca aggcgaagag      8940
     gggaaaaagg acccggaacc tcagccgcag ccgaacgaat accaaacaca ggccccgccc      9000
     cctccgaagg acgacggcat cgcttccgca gcgattttaa ccgagggggg agagcaacca      9060
     ttacggtatc aagcggtagc gaaccaatta tacccggtgc taccaaacgc caacggtgta      9120
     tttccgccgc gaaagagttt taaacgctca ttcgagacag aagtctaatt aaacaaaaaa      9180
     ttatcgtctc aacaacgctg ttataattgt accggtacgc gtattgtagt atgtatgcac      9240
     ttgacgacaa agcaaagaaa acattagtaa atcaattaat cgaagtcaga aaagaaatta      9300
     cgtggtcagc acaaagacgc ggtgagtcgg cgaacgaata cggmgcacga gtagcggaac      9360
     tcctcctcgc ctacaatagt aagggcaatt tagcaaaagc agaagtattc gaaatcaccg      9420
     attcacccga agatagggaa agattggcta tttattcgtt cttgaaggga atccgtgggg      9480
     aagttaagaa atatatgtgc gaactcgcgg tttataaaga cttaacacac gcgagaagac      9540
     acgcacaaca gatcgcgcgt cgcctggaag atattaaaca aatcaaaaaa actatgatga      9600
     cctttgtcta gaaatagcaa ayagaaaaca aactaagcaa ggacgaattg aaccttcgag      9660
     aacaataaaa agccaatgga ctactactca gtctgtaacg cgttagaagg ctkgtactcg      9720
     ttccaaacta aagcgggagt acacggatac tacgctaacg atcacaaaaa actatattgt      9780
     caactctgtt atcatcagct tgtacaagac actcggggcg attacgtccg atttctagac      9840
     acgcatatac tctcaaagat cacgttaccg atttcttgca acatttgcgg ggcgacactg      9900
     cttgaggtag cgccagctcg cgagtgcgaa aaatgtcaca agatttatac cgggcaggca      9960
     gcaatcagga ggccgaccgc ctcacatttc gtgatcggtt tcgtaaaact gaatccgaac     10020
     taattagaaa ttacgaacgt gttagctacc aatacggatt aaattttctc tgcgaacggt     10080
     gctattcgga aacggcattc gaattacgaa atttagcttc acttcacatc actcggacgg     10140
     tggaygaact ccggaacgaa atcccgccca tctggtgtgg atactgcaag aaaatcatcg     10200
     gattcgatag atgccattta gatcaggcga tcaaaaatag acggcgaaaa ttctcaatag     10260
     tgggcagagt gaaagaaaag gttttagcca cgcatatcgg agtcaggtgg gagtcaatct     10320
     ccgaaagaac aatagataag ataaacagca cagcagtgca agaagccaar cgattacggg     10380
     aaaaaagagt aaacgagtac ggaaagctaa tagctgaaca gcgggcgcag gcagccgacc     10440
     aggtacgcgc cggaacaata atcccggccg aggcgcaggt agtacggtca ctgaccctag     10500
     accctcaawa ctacggagac tgtaaaaatt atacgatcac taccgaaggg ctcacgaacg     10560
     acccactctc gggaacagca cacgcaaggg gaaatgaatc ggacggagta atcgagatca     10620
     aggaggaagt cgaagaaaat atagatcact acatgataac gcgcagcgac ggcgctatag     10680
     gaatttgttt tgtagacaag aactcggaaa acgcgacgcg taacgatgaa aatagttaga     10740
     gactakatga catattcaat caaaaccact ataatctgac acaatcaaag atcwtatgat     10800
     gaccagcgga attaaataag aacctcgcat tacagatgaa gtggagcaca tatttggggg     10860
     caggactcct cctaaccctg ggaacagtaa tggcgggaac caacatcaaa atatccggga     10920
     ctaaaaacaa ccccggactt atgtaccaac gaaacgacga tatacgcctc tcacctcggg     10980
     agaatggaag ttcgtaaccg gaatcgacac gacccctgtt ttcgacagcg caggattatt     11040
     ccaacgcgca gcgatattcc tgacacaaac agaagcatat cgaaacgcat ccaacggagt     11100
     attaatgaat cagatgtacc taatgcagga yaaaatctta caactaaata aaatggctat     11160
     tacgttcgaa tcaataaaag gaccgtacga tattcggacg cacaaacacg gcggcaagga     11220
     cttcgaactg ttggaaggcg aaggaatcaa taacctaata ctactcgagg atatgcggcg     11280
     aaacaggaaa gaggaattgt ctcaaccggc cgaccgcaag acagtcatag aaaatgaact     11340
     gaatgaagaa ataaatactc tagaacgcaa aaaacacact ctgatgacta ggcttggatt     11400
     gaacgaagag gatgaaacta acacagtgga argagagcaa gagccatcca ttgacgaaac     11460
     tatccaagtc ctcaacgaaa acttagaatt ggcaagcaaa ttgatcacca tcatgcagat     11520
     taaggagtat gggctgtcga cgagaacaat gagaaacgcg ctggctcgac tccaacgaac     11580
     rgagggacag gcactggcga caccgtttga atcaataaac caagggacaa tacgcgagta     11640
     cggcactgtg gagatgtacc tgctacagag gcagctaata atccaggtaa acattccgct     11700
     agtaaccgaa caggtataca ggacctacga acttgtgtca attcctgttt tcgacccact     11760
     cgaactacct cgacacaccg caataaaaat cgtcccaagg ggcgattatc tagtaataaa     11820
     cccggataac aacgaacact tcttcatgag caaggaggaa agaggagagt gtttgaaagt     11880
     acaccgcgtt cgaatatgta aggccaaccg agaactaaaa agggggatgg attgcgagag     11940
     cactctgaaa gcggatccgg aatcatacag ggcccacaac ttgtgcaaac gaaccttgat     12000
     acacgggccc gagtattact taatcagaac acaaaaccct gcacgatgga tcttttcaac     12060
     agccggaaga gtgaacggga ccgggatgtg ccaggaagaa aaacagagcg tcaccttaga     12120
     aggaagcggc gaggtaaaaa tacccgaagg atgtcatcta agaatagcgg acagcatttt     12180
     ttatggggga gcggaccaag acgaacgcga aatcttcatc ccgcacgtac atctcaccgc     12240
     ggcaagcacc ctatgggccg acaaacgccc ggaggcaatt ccgcaggtag tacgcaccgg     12300
     cacgacgggg gtcgcaggaa acacgaccat tactattatg acggtaataa tcggtatatt     12360
     cggaactatg gtgagtctct taatcgtcgt agggatccga agcctaaaag ggcggaatag     12420
     acaagaagag ccggaggcaa tttacgtgcc tatgagagga ttagacccaa caatcaggtg     12480
     cgaattccac ggaccccacg cgagggctga aaaagtttat gatgtaccga gagtgccagc     12540
     aatgcaggta cgagaaaacg cactgtcagc aataatcgag gagagaacag agtctggata     12600
     aacraayaag agaaaaacaa acaaccacga gtcggcaggt agagagaatg caaccaacta     12660
     gagtctaaac accaatacgc gactacccgc aaagaaagta agcatttgaa aatgcatatc     12720
     atatcaaata aataaaacct ataatcaagt gtggacatta tattcatgtg tgaaattata     12780
     taatccttgt gtgaacaaac ttataactaa tctcagcata gacagggagc mactctctaa     12840
     ctatgcatat atatatatat atttaaccaa aacaaaacat atttaatcac gtgtgcgacc     12900
     atataatcaa tgagtgtgaa cataaatgaa aagaaacaaa aagattttga ttgcaaagtt     12960
     aattttttta ttaatgctga caaaaaaact agttatagag atcttaggta cacataggat     13020
     aaaactagct gacgtaaatt aattcatcta caaataactt aggttgtaaa atttacatga     13080
     caaagattct tctaacttac taggaattaa gactaaaact atgtagaagt acgaactatt     13140
     cgattatatg tgcaaggaaa gctttaggat aaatcaagag gaatgtacgt tttaagacat     13200
     attaggctaa aactatactt aagaatttgt gtaaatcaag cgactaggag acgggcaaag     13260
     ataaacaaaa taacatccgc actcatccac ttcgcgcgtc gcctactcgc ttgagatata     13320
     aaataagcca aacaaaaaat tataactcta gaaatattaa tactcgtata agaatatagt     13380
     tagtaaaaat atgtaaaccg gcagcaagaa aagcggagac gagactcctc gactcgagaa     13440
     ggctcgtact gtttcgcttg cccaagggar acgtaaaatc gatgtatgtg acaaaaaaaa     13500
     taaataaaga aaagggcact tgcccaccaa aaaaaaacga ataataaccg gaacatcatt     13560
     tatcggaccg ggtgtatccc taaaggacag tcgagtttgg ggaggagggg atacggacga     13620
     caaaaccaac agacgagaaa attccttttc tatacgtata tatttattta tttatttgtt     13680
     tatttataca tcaacgggca ggagtaccct tacgaaaata taaaaaagca cgcagtacaa     13740
     aatacattat gatcacacgc agaacgcaat tacaaaaatc tcaaaacaag tcggcgtcgc     13800
     tcgtcgctgg acagcacttg tgaccgggaa tgcggatcca attctgtaaa caaaccaaga     13860
     aatttttttt tattaaacac aatcatcgaa acagctgaca caaaatagag aaatacttac     13920
     gcccttgccc cggagacgca tcatgtgggg tggatgatca aggcggcaac ggcagatcga     13980
     gcagatcctc caggccgcgt gatcctccca ggactcgtgg tgacattcaa tccaggagtc     14040
     ggggaaggag tcccgaacaa caggggaccg ggaatcgaag acgaactgca aaagaaaaat     14100
     aagattaaac ataccaaacg acaatgagag ggcctttata tatatatata tatatataca     14160
     tatatataca aaaaaacaca ctacatctta ccctgtcata atcacggtag tactcccgct     14220
     cgatggtcgg aggagtgtgg cgcggctgac ggcataaggg gcaaaaagac ccgatgtcaa     14280
     tccaccaggg agtctgggta tggcaaggta gagtgaacaa aggggactct tcctccggga     14340
     agtcctcaaa atcagaagcc ggagagggcg gtggcgtaac agggacctga cggtcggcct     14400
     acaaaaaaaa aaacaaagag gaggaattaa gacccaaaaa gggaacatta cacattgggt     14460
     aatttaaaca aaaacaaaac ttacccaacc tacaggcttc gatgggaccc aggcaggacg     14520
     atgccaacta aggacacgaa ccactggatc aaagatcgga gccagagtag agatcacggc     14580
     ccgcgcaaac cgaaccagga caccagcaca aagcactact gagacgaaca tctcgaacag     14640
     gtaggacgat cacggaggag cagaaggcga gaaactgagt gcggaatgag cagtccgggg     14700
     tccttttaaa gggacacagg taggcgaacc ycgagaagga ccgagggggc gaagaaaagt     14760
     gagaaaccaa tcgggcgaca aattttccga gtagacccaa aggaagggac tcacccccgc     14820
     aaagagaacc aattagagga aaacgccacg gtcaagaagt gagaacaagg aggtacgccc     14880
     accgcaacga ccaaaaatcg gagagggaga gaccccgcga caacgggacc gaccgcgtag     14940
     gacaaccatc aacacgccga acggacctcg gacaccaaaa tcaagattaa cacgactcaa     15000
     gaatcacaca ttgtaaacaa aaaaaagggg ggaaccaaaa acacggcgaa cgacgatttt     15060
     gtataaatat atgaacttac ctcctcccgc tctctatcct taaatcttct catcccaatt     15120
     cagcaaaaat ttaaaattca gcgtcctacg ctgaacaaca atcagggggg ggggggggag     15180
//
ID   Gypsy-26-LTR_NVi repbase;    DNA;    INV; 1147 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.05, Created)
DT   08-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1147
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 989-989 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1147 BP; 342 A; 298 C; 240 G; 267 T; 0 other;
     tgtcacgtca acctactatg acctagactg accggtcaac gcacacgcgg ataacacgtt        60
     caaccaacga agtacctcac cacggtaatt gggaatattc cacggcaggc ataacagagg       120
     ccaacgaacc aacaacggtc ggcaacacag agcacgacaa aacaaccaag ccactgacac       180
     gcgcggcagc agatgaaagg gcaacgatcc tgaataaact aggtcaaaca aggggagata       240
     ccccagagct accggacaat aaggaggcca taaatctcag acaaacgacc caaataagtg       300
     gaaatcgata caacaatgaa gggaaattac aataaagaaa accattacag ctggccagac       360
     taggggccgc gtactgaggg acattgatta ataaaagggg cgcccacccc tactgagaca       420
     tacgccctcc ctaaatcctg attggccaga accttcccta tgcttatgca ttaccctcat       480
     ccctataaat accaatggag agcaaggagg agtattcttt cgtaacccgg agttcttact       540
     ggtagggcga agctctgccc gactcgcgac ttaaactatt tttctgtaaa cgaacataga       600
     gtcagagcgt tcgccaagtt tttggacata tttctacctc agacacgagt tgtactcagt       660
     cgaggacttg tatcttgtac catttataat ctgacgagtt gaataaacca tttctctcaa       720
     ttacttaatc cttgcgtacg aattattaca tttcaaactc cgcgcccttt gagacgagct       780
     acagcgccag aacgagagcg agccacccta tcggtaacta caagtcagct tcgtcaaggt       840
     aagtcgtttc tcctatcaat cttctcaaat tcacgtcagt gtcgcatgca acgttattgt       900
     gtcagtacat agtgtttaaa cctagctagt ccaatacatt tagaagtcac tctgagtttc       960
     gttactccgt gagctatcac tatcgcacag tcagccgagc tacaggtcaa gtcgcgcgct      1020
     tctttacctt ttccctaggc ggtatcgcgt gagcggactg cgctaaataa aaggtctcat      1080
     cgactcggaa tttgtaatta tttctatcgt gcgagtattc gctctgtgcg gccacccgga      1140
     cgtaaca                                                                1147
//
ID   Gypsy-260_AA-I repbase;    DNA;    INV; 8397 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-260_AA_;
KW   Gypsy-260_AA-LTR; Gypsy-260_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8397
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1121-1121 (2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [5263-5742] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1001..2884
FT                 /product="Gypsy-260_AA-I_2p"
FT                 /translation="MEKLPYAEHLNQEEVDYELLIRGELGEENSNLDLASK
FT                 QRHLRALFKSDVKNMKNYPSPYNITEEYDYVDGRVSDLMNALKRGVEQRYI
FT                 SRLLHYYYRAKRCLSEQPEENKLKRNLIRRIEGCMKEFKIEPPVSPVDQQM
FT                 NSRSNEADKVDLAQALPIAMGKTSFEQMVVNQDQPIGTPQDTSKYTGTTPK
FT                 AQGFTPGDAHLNKFANIEKVGEDQNAMQQKIDHLERMLQSVTKLLLERESQ
FT                 DVQQERGQRVRPSIGNSRSSGLFTRPHSDSSGDEDLKNVHKSRRHYAVARD
FT                 QQRVFVNRQRFQDPYDSEEERSTGSSVGGRRSTGWRSYRHERRRDDGIRDH
FT                 INRVEKWKLRFSGDSRSVTVENFLYKLKKIAEREGVSEHQLLRDIHLLLEG
FT                 PASDWFFTFVDELEDWQTFERLIKYRFGNPNQDQGIRQKIHDRKQLRGESF
FT                 IAFVTEIEKLNRMLSKPLSNTRKFEVIWDNMRQHYRSKISIVDVQDLQQLV
FT                 KLNHRIDAADPTLHQLGEPRRTINAVQAEESDYNSDESAMVNSMKPRQIKQ
FT                 NRPPPLQNQFQQTRDSNQPGADNTEPTTQRSCWNCQQQGHNWRECRRPKVI
FT                 FCYGCGNLGRTVRCCERCSAMNRPSSSQGN"
FT   CDS           2953..6138
FT                 /product="Gypsy-260_AA-I_1p"
FT                 /translation="MVADFDPLRRIHHIRVSVTKCPHIRVKVFETEIDALL
FT                 DSGAGISVINSQNLAEQYGLKILPAAVRVSTADGTEYRCLGYLNIPFTYKG
FT                 ITKVVPTIIVPQISRSLILGADFWESFGIQPMIDVGNGPEKIETLQASDGS
FT                 HIVFNIEPTAHLPKVEEKEPDDTLDIPAFDVPPEPVPEDIETEHELSENDR
FT                 RKLIETIKLFDFTAPGKLGRTDLIQHEIILKEDAKPRNQPVYKCSPFIQKE
FT                 IDAEIERFKELDAIEECYSEWTNPLVPVRKSNGKIRVCLDSRRINAMTVKD
FT                 AYPMQNMQDIFHRLGHAKFYSIIDLKDAYFQIPLKKECRNYTAFRTSKGLF
FT                 RFKVCPFGLTNAPFTMCRLMNKVIGFDLQPFVFVYLDDIVIATETLEEHLR
FT                 LLAIVAERLRRAKLTISLEKSRFCRKKVMYLGYLLTERGVSIDQSRIQPIL
FT                 DYARPKSVKDIRRLMGLAGFYQRFIKDYSRITAAITDLLKKEKKKFTWTEA
FT                 AEASFNELKSVLTSAPILANPDFTQPFVIESDASENAVGAALVQNQGGETR
FT                 VVGYFSKKLSSTQRKYSAVEKECLGVLLAIDNFRHYVEGTRFKVITDARSL
FT                 LWLFKIGAESGNSKLLRWALRIQSYDIELEYRKGKNNITADCLSRSIDTVM
FT                 VVQPDPDYEELAANILADPIKHGEYRVIDGQIWKYVKGSSRQKDPRFLWKR
FT                 FPIETERASIVQQEHEKAHFGFEKTLAAVKERFFWPRMAQQIRKVCRECLT
FT                 CQTSKSGNRNVTPPMGSQKPVEYPWQFVTLDFIGPLPASGKKQSTCLLVAT
FT                 DVFSKFVLVQPFREAKAEPLVDFVENMIFRLFGVPEIILTDNGTQFVSKAF
FT                 KTLLQEYNVNHWLTPAYHPQVNNTERVNRVITTAIRATLKKEHKHWADDIQ
FT                 AIANAIRTAVHGSTKYSPYFVVFGRNQVSDGREYSQMRDVTQASTMDETEI
FT                 SASRKKLFEEVKANLSAAYRRHEKSYNLRSNAGCPRYVAGERVLKKTFDLS
FT                 DKGKGFCKKLAPKFEPCVIRKVLGSHTYELEDNAGKRIGVFYADQLKKLNA
FT                 SSHPN"
XX
SQ   Sequence 8397 BP; 2627 A; 1668 C; 1840 G; 2254 T; 8 other;
     aatagccgta ccgtttggcc gcgcgtgagc gccggtagca ggctttaagt tttgaatttg        60
     agtcgctcat cgaaatgaac accgcaccgc acaagaatac cgcacgatat tagatttata       120
     gttagctagc gaaagaggga atgaactaga atgaatagta gatagatagg cctataagca       180
     aatgaactcg atgtcgataa agaagaagtg taaatacaaa tgttgaaatg gaaagttgaa       240
     ttagttgaat aaatgggagt ttgggttaca cgatagatca acagtttttg aacagcattt       300
     cgtatgagag aaatctgaag cggtaaatgt agaagtattt tcacacttcg gtcggtagtc       360
     tcttttgtag tattttctgg gaaggttggt cctgaatcca accaaggatt tttctctcat       420
     cgaacgtggc ttgttcgaag tgtttactgg tgaagtctgc ccgtgatgat acccctcgcg       480
     acaattgtct agttaccggc agagttcgct ttttcacaca caaattttct gattcgcacg       540
     acctcacagt cgtgaggcat cttgtttccc taggtcagcc aactcgtttc ccgcccaata       600
     actttgggaa aatctttaac cctcccctga agggtctcaa aaggtcgggc aacctccaaa       660
     aacggttagt ggtctccaat cggagtggcg cataagccac tttaacttac atccgggaaa       720
     ctcgtaaggc tgccgggtta catttggcgc ccaacagaat tggcaaaaca cattttcatt       780
     tttttgattg tatataaata atttctggtg gaagtttacc tttaagttta gcattattaa       840
     gcgttttact acatatttca ctactccaag taattttgtt tagtttgttc aaatattgaa       900
     ctgattgaat ttgtattgaa catttggtac atcgtttctt accataaaag tattagaaga       960
     aactcatata caaagcataa tagccagtta atccttaaaa atggaaaagc taccttacgc      1020
     tgaacatttg aaccaagaag aggttgacta tgaacttctt attcgtggtg aactaggtga      1080
     ggaaaatagt aatcttgatc tggcaagcaa gcaaaggcat ctaagggctc tatttaagtc      1140
     cgatgtcaag aatatgaaaa attatccgtc gccatacaat attacggagg aatatgatta      1200
     tgttgacggt cgtgtatcag atttgatgaa tgcactgaaa cgaggtgtag aacagagata      1260
     catttctcgc ttacttcatt attactatcg tgcaaaacgt tgcctttcag aacaaccaga      1320
     ggaaaacaaa ttaaaaagaa acttgattcg tcgaattgaa ggttgtatga aggagtttaa      1380
     aatagagcca ccggtttcac cggttgacca gcaaatgaac agcaggtcga acgaggctga      1440
     caaggtcgat ttagctcaag ctcttccaat cgccatgggt aaaacttcct ttgaacagat      1500
     ggtagtaaat caggaccagc ctattggtac tccgcaggat acatccaaat atacgggaac      1560
     cacgccaaaa gcccaagggt ttacgcctgg agacgcacat ttaaataaat ttgcaaatat      1620
     tgaaaaggtt ggagaagatc agaacgcaat gcaacaaaag atagatcatc tagaacgaat      1680
     gcttcagagc gtaacgaagc tcttgttgga gcgagagtcg caggacgtgc aacaggagag      1740
     aggacagaga gttcgaccct cgataggtaa ttcacgcagt tctggtttgt tcacacggcc      1800
     tcattccgat tcgagcggag acgaggatct gaaaaatgta cacaagagta gaagacatta      1860
     tgctgtagct cgcgaccagc aacgagtatt tgtaaataga caaagatttc aggatcctta      1920
     cgattctgag gaagaacgta gcactggatc gagtgtagga gggagaagaa gtactgggtg      1980
     gagaagttat cgtcatgaac gtaggcgaga cgacggaatt agagatcata taaaccgagt      2040
     agagaaatgg aagttgaggt tttcggggga ctcaaggtca gtcaccgttg agaattttct      2100
     atacaaactg aagaaaatcg cagaacggga aggcgtttcc gagcaccaac tcttgaggga      2160
     catacatctt cttctagaag gtccagcgtc cgattggttt tttaccttcg ttgacgagct      2220
     ggaggactgg cagacgtttg agagactaat taagtatcgc tttggaaacc caaaccaaga      2280
     tcagggaatt agacagaaaa tccatgatag gaaacagttg cgtggcgaat ccttcattgc      2340
     attcgtaact gagatagaga agttgaaccg tatgctttcg aaacccttat cgaatacaag      2400
     gaagtttgaa gtcatatggg ataatatgcg tcaacattat cggtcaaaga tatcgatagt      2460
     cgacgttcag gaccttcaac aactggtaaa actaaaccat cgaattgacg cagcagatcc      2520
     gactttacat cagttgggtg aaccaaggcg gacaataaat gcagttcaag cggaggagtc      2580
     ggattacaac agtgacgaat ccgctatggt caatagtatg aagccacgtc agatcaagca      2640
     gaaccgacct ccaccattac aaaatcaatt tcaacaaacc cgggattcaa atcaaccagg      2700
     ggcagataac acggaaccaa caacacaacg atcttgttgg aattgccaac aacagggcca      2760
     caactggaga gaatgtagaa gaccaaaagt gatcttttgc tacggctgtg ggaatttggg      2820
     acgaacggtt cgttgctgtg agcgatgctc ggcgatgaat cgtccttctt ctagtcaggg      2880
     aaactaaaca agggaggtgg tagcggggat cgaaccaccc ctcattataa gcagattccc      2940
     aaaccgacga ccatggtagc agattttgac cctctaagga gaatacacca tataagggtc      3000
     agtgtaacaa aatgtccaca cattcgagtg aaagttttcg aaactgagat agacgcgcta      3060
     ctggactcag gggccggaat tagcgtaatt aattcacaaa atttggcaga acaatatggg      3120
     ttgaaaattc ttccagctgc agttcgagtc agcacagctg atggaacaga atataggtgc      3180
     ttgggctatc tcaatattcc ttttacatat aaggggataa ctaaagtagt accaactatt      3240
     atagttcccc aaatatcaag atcgctcatt ctaggagctg acttctggga aagctttggc      3300
     attcaaccca tgatcgatgt cgggaatggt ccagagaaga ttgaaacatt acaggcatct      3360
     gacggatccc acattgtgtt caatatcgaa cctacagcac acctaccgaa ggttgaagaa      3420
     aaggaaccag acgacactct agatattcca gctttcgacg tacctccgga accagttccg      3480
     gaagatatag aaacagagca tgaattgtca gaaaacgaca gacgaaagct aattgaaacg      3540
     attaaattgt ttgattttac cgcacccgga aagctagggc ggactgatct cattcaacat      3600
     gaaatcattc ttaaagaaga cgcaaagcca aggaaccaac cggtttacaa atgttcccct      3660
     ttcattcaaa aggaaatcga cgcggaaatt gaacgcttta aagaactgga tgcaattgag      3720
     gaatgttaca gcgagtggac aaatcctctt gtaccagtgc ggaagtccaa tggaaagatt      3780
     agagtttgtt tagattcgag gcgaataaat gcgatgacgg taaaagatgc ataccccatg      3840
     caaaatatgc aagatatttt tcacaggcta ggtcatgcaa aattttattc aatcattgac      3900
     ctaaaagatg cgtattttca aataccattg aaaaaagagt gtagaaacta cacagcgttc      3960
     cgtacatcaa aaggtctttt tcgttttaaa gtgtgtccat ttggactcac aaacgcgcca      4020
     ttcacgatgt gccgtttaat gaacaaggtt attgggtttg atttacaacc ttttgttttc      4080
     gtgtatctcg atgatatcgt gatcgctaca gaaactctcg aagaacacct ccgtttactt      4140
     gccatagttg ctgaacgact tagaagagcc aaactaacca tctctctaga gaaatcacga      4200
     ttctgtagaa agaaggttat gtatctaggt tacctcttga cggagagagg ggtttccatc      4260
     gatcaatcga gaattcagcc aattttagat tatgcccgac caaagtctgt taaggacatt      4320
     agaagactaa tgggtcttgc tggattctac cagagattca ttaaagatta cagcagaatc      4380
     acagcagcaa taactgatct gctcaaaaaa gagaagaaaa agtttacgtg gacggaagcg      4440
     gcagaggcat cttttaatga attaaaatct gtactgactt cagcacccat cttggcgaat      4500
     ccagatttca cacaaccatt cgtaattgaa tcggacgcct cggaaaacgc tgtgggtgcc      4560
     gccttagttc agaatcaggg tggggagact agggtagtag ggtacttcag caaaaagctt      4620
     agttccactc aaaggaaata ctcggccgtg gagaaggaat gcttaggcgt tctgttagcc      4680
     atcgataact tccggcatta tgtggaaggg acaagattta aagtcataac agatgcaaga      4740
     agcttgttgt ggttatttaa aataggagcg gaatcgggaa attcgaagct gctacgctgg      4800
     gcgctccgaa ttcaatctta tgatattgaa ctcgaatatc gtaaaggtaa aaataatata      4860
     acggcggact gtctttcaag gtccattgac acagtaatgg tagttcaacc cgacccagat      4920
     tacgaagaac ttgcagcaaa tattttggca gaccccatca agcacggaga atatcgcgtg      4980
     atagatggac agatttggaa atacgtcaag ggttcaagcc gccagaaaga cccaagattt      5040
     ctatggaaac gttttcccat agaaacggaa agagcatcta tcgttcaaca agaacatgag      5100
     aaggcccact tcgggttcga gaaaactctt gctgcggtta aagagcgatt cttttggcca      5160
     agaatggccc aacaaatacg aaaggtttgc agggaatgcc taacatgtca gacgagcaaa      5220
     tcagggaata gaaatgtaac tcctcctatg ggttcgcaga aaccagtgga atatccctgg      5280
     cagtttgtca cactggactt catcggacca ctaccagcgt caggaaagaa gcaaagcaca      5340
     tgcttattgg ttgcgacaga cgttttcagt aagtttgtac tggtccagcc ttttcgagag      5400
     gccaaagcgg aaccattagt cgatttcgtt gagaatatga tattcagatt atttggagtc      5460
     cctgagatca tactaacgga caatggtact caatttgtat cgaaagcgtt taaaacccta      5520
     ctgcaggaat acaatgttaa ccattggtta acccccgcgt accatccgca agtaaataac      5580
     acggaacgag tgaatagagt tataacaacg gcaatcagag cgacccttaa gaaagaacat      5640
     aagcattggg ccgacgacat ccaagcaatt gcgaatgcta tccgtacggc ggtccatggc      5700
     tccaccaaat atagtcctta tttcgtcgta ttcggacgaa atcaagtttc cgacggaaga      5760
     gaatactctc aaatgagaga cgtaacacaa gcgagcacaa tggatgagac agaaatatct      5820
     gcttcaagga aaaaactgtt tgaggaagta aaggcgaacc tatcggcagc atatcgaaga      5880
     catgaaaaga gctacaacct tcgttcgaat gctggctgtc cacgttatgt tgctggggaa      5940
     agagtcctca agaaaacttt tgacctttct gataagggca aaggtttctg taagaaacta      6000
     gcccctaaat ttgaaccttg cgtgattagg aaagtactgg gttcccacac ctacgaacta      6060
     gaagacaatg cagggaaacg gattggggtt ttctatgcag atcagctcaa aaagctaaat      6120
     gcatcgtctc atccaaacta ataaaactaa tttaaagcta tgtgcctctt tatgagcaac      6180
     aatgattacg atgagtacga aatccaaata aaatacctac ggggtaaata atttttcgat      6240
     taaaagtcga attcgaccag ggaaaatgga agggtcagtt tgctagcaaa acmttgtctg      6300
     cttgtgatga aacccgccaw caacaccwca cttcacaaag caaagaatga gccggacgat      6360
     gacctgtcca aagtagtgga tcaccacgac tgcataaagc gagtaccggt aatgatttct      6420
     taaaataaag tagtgaagta ctagaaggga agagcaagct gctaacataa cgacctgccc      6480
     aagagtactt gagtagaatc ttcaaaatcg acaaaatttt ccaaaattga tcaagctatg      6540
     tacaatctct attgagtgac aatgaggaga agtcccctaa aaacaccaac tacgggtaga      6600
     cgcaattttg tttgattgaa taggacgtga agtgattcat tctatgacga atcccttgta      6660
     aatatctctt tgtaaatagt tgaataggtt agttagttag taataagtcc tacacttcgt      6720
     cctgaattat aactagatta gtacttagat taggttagta ttgaaaaatt gaaattactc      6780
     acgattttcc atgaattttt cccattttgt tccctttttc gaatgaattc ttagtttcct      6840
     acgttttttt ccttttcgtc tgtccttcga tttgtttagt acctaaaagt cgaaaggtgg      6900
     cattaataat ttgcaaagta aagtgaattt tgaaaattag aacaataatt tacctttttt      6960
     cctttagttg gtaggctcct cgaatagttg aactcgtttt cgaatttgaa gatccctttc      7020
     ctggcagtgt cgataagttc tttgcagccc acacgatcca gtccaattgc agtccttctt      7080
     taccgatcca tatagtttac tggtttattt ttagtcctat ccgtccatcc ttccatctcc      7140
     atctttgttt acctttcsgt ccatcagagc agttttcctt cccgtgcaat tcgatggaat      7200
     ttccggagcc ggtatggggt cgcgctcatt ccatttctgg gcaattcacg tccaattgca      7260
     ttccaatccc cktcagatac tttccgtcac agcaattctt gttggaatcc tcagcaacac      7320
     ctcccagacg gcgactgcac cgcccgtagg ttgcggcagc tgcgaacaaa acaaaaacac      7380
     acaaaaagct ctcttcaaac tcaacaccat caatcgaacg acaaattatc acttccctct      7440
     ggttctggca cagcactaaa acaccttttc catcaatttt cactgttttc cgaccgtttt      7500
     cactactttt ttacaattcc gattccgcga cgtgcttagt tttccgcgac gaactgtcaa      7560
     actttgtttt ggttctcgca tagggttcat gatgttggca agagtgagtg actatgaatg      7620
     aacgaaatga gtgggtggat gaatgtttcg cgcatgcgag gggtgttcga atggaaaatt      7680
     ttgtgttgtg tgtttaaaga acaatttcgt tgtcggtgtt cacactgacg gtcagaaatg      7740
     ttcggatatt tacgttcttt gagtttcggc tacatggata gaagtttccg gattaatttc      7800
     cgggtgatta tctgtgagtc gaagcagacc cccacattta agatggagac tatcagatcc      7860
     gctattctcg ggaagatcct gaggttggat ttsgatattc ttcgtcagtt tattttttca      7920
     ctacggtgat agtwtaccga gaactctcac ccgttgctta gttgatatac tgaggttggt      7980
     gcagacaaga atttttatat gtaagaatgc gttgccaaca atctgaatga cagtttattt      8040
     tttcacgttt awttgcctga tcaagatcaa aactccatag ccagtcattt ttgtacatag      8100
     acgcccttct ttgttgcttt gtatataaat agtttataag gtctgattga tttttcattt      8160
     actaattaat tcctgctgga gaccggagtt gaaaaaacgc tgatggtcag tagcagacgt      8220
     gattggttga tcatgcgctg taaattgagg gagagtctgt taaggcgatg aaaccatatg      8280
     accccaggat ttaaaagtga atacaaaatc aatcgaatga ccttcgaaaa tttgattgat      8340
     cttcgaaatt ccgttttcga ttctcaatca aattttcgaa aatttagtaa ggaatga         8397
//
ID   Gypsy-260_AA-LTR repbase;    DNA;    INV; 1405 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-260_AA_;
KW   Gypsy-260_AA-I; Gypsy-260_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1405
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 1122-1122 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1405 BP; 354 A; 346 C; 363 G; 342 T; 0 other;
     tgtagcagta ccatgaattt gtaattataa tttgtaaata aatagcatta gtagcaaatg        60
     taatgaactt caccattgaa ctaccccttg aaatcgaccg ctcagtttga gtgaatatta       120
     gcatagaact caatgaactc actgagctca tttactccac accgcagtcc ataaactaaa       180
     tgagttccaa ctagccttct ggcgccaaac ctcagcagcc atacgaactt tgttgaagcg       240
     accatgtgac gatcctcgga catcgacctg tcgagatcgt attgaagaat cgttgacccg       300
     gcctttccta ttcataatct tcgggagggc agcgatttgg aagatctatc ttggggaaag       360
     gggatgcttt cacccgacga atttggaacg ttggtgtgcg tgaaagcgaa gtcttgacct       420
     tcgcgaaatt aacttcgtta atttcgcgta atatccggtg acgaagacct tcacatctcg       480
     cgccttatct gaggatcttc agacttagct cgttcacttc gttcaggtcc gcggaagagg       540
     cgagaacggt ccgaattagt tatcgcgccg tggtgtgttc cgaaggtgaa ctaaaaagtg       600
     tgaaagtgct tcgagtttac tattagattt tctttcgttt ccctcgaata gattaggtag       660
     agttgctagc agaaagtgcg tagtgcgttt attgcggttt aagtgcgagt gtagacttgc       720
     ggattaagcg gtaagacctt tgtgcaaatg gtgagcgtca gtgttcaaca cccgccatca       780
     acctttttta tagatttgtg gcacgttgcg agcccgtcgc accaccccca tatcgttaga       840
     gaccgttttt gaccccgctt tcctgctgcg aaggaagtcc cggcggtaca cgtggccgga       900
     gagggcagcg tacgttactc ccgcgccctt ggcagggcgc caagcaacga ggccggtttc       960
     taccggcgag gttctcaact ccgacgacgt tacgtccgag tgagaaacag cgaaggaaaa      1020
     aagttccccg accggattcg atccggtgac caccagcgtg agaggcgagg accctatcca      1080
     ctagaccacc gtcagtgtcg atcgttggtg agacggccgt accccgtcgt tgaagaccac      1140
     aaatctgcgt gggatgcgcc gttgagaacg gcaggcaaga ctatcatcga gcgagcgagc      1200
     gagcaagtag catccagagt cgagcaccgg agaggagacc gcgtgtagta cacgtggtac      1260
     taatagttcg agtcagcaaa ccgcagatgc ccccacgaca gtagacagcg tccaaatcgt      1320
     aagtagcatg catgcttttt gattcccatg cgcatggtga gatttgcccc tagccttagc      1380
     caaatcagct agtgtggccg ctgca                                            1405
//
ID   Gypsy-261_AA-I repbase;    DNA;    INV; 4280 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-261_AA_;
KW   Gypsy-261_AA-LTR; Gypsy-261_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4280
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [4114-4632] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           480..4241
FT                 /product="Gypsy-261_AA-I_1p"
FT                 /translation="MIPQKNIKLARYEFYQCQQEPGDDSREPESMSKFINR
FT                 TRMLVKDCNFGDLEDEMLRDKIITGIHDVRLKKKLIETAELTSAKVIELCQ
FT                 AEEATRAEMERNRWLESRQHGVNRIVTASRDSRQCGYCGRSYHKNLSECPA
FT                 RGATCRFCGFKNHFEAVCKKKKEQSKQTGIPGPSRRLAKKTVHTVDCETDP
FT                 PTVTQSDNEQESVNVCQYLYSINQDNDGLLKATLTFLNVNQRERKVPCILD
FT                 SGASCNVVGKRNAMEILGTKQLSLDNESAVLNVFGGGKLRSLGRTEIDCVH
FT                 NGSRFKAVFHVVDFEQPPLLSFRTCLQLKLLQVCFSVTEDQREAARRIVNR
FT                 YPEVFSGLGKLEGKVHLDVDDSVKPVVQHPRRVAVTLRENLRQELSNLVQQ
FT                 GVITEEKRHTNWVSNLVLVKRNDKLRVCIDPIMLNKALERPHYQMPTLDEL
FT                 LPELANAKVFTTVDAKSGFWQLELDEESSKLTTCWTPFGRYRWLRMPMGIS
FT                 PAPEVFQLRANEAIQGLKNVRALMDDFMIFGCGNTIEEALIDHNRNLQAFL
FT                 ERMKEKNLKLNPDKISLCKDSVKYFGHILTASGVQPDPEKVNSILNMEKPK
FT                 DVPAAQRFLGMVTYLSHYLPSLSTLAEPLRRLTYHDQPWTWSHEQDEAFDK
FT                 VKQAVTSAPVLRYFDATKHTTIQCDSSSVGLGAVLLQEGQPVVYASKTLSA
FT                 TERRYAQIEKETLAILFACRKFETYILGRPVTVQTDHQPLIKIFQKPLTEA
FT                 PLRIQRMLLALQRYNITLTFKPGKEIVIADMLSRAAHIDNDITSRDIYDIF
FT                 VTDIENICALDYLPISDARVDEIRFRSREDPDIQSIIRCIIDGWPRRYDEL
FT                 PPAIQIYWKYKNELSTHNGLVLRNDRILIPKSLRGAIMERLHQSHCGVEAT
FT                 TKLARDTVFWPGITDQIRQRVQHCHVCAKFSSNQQPQPMQSHQIPSYPYQK
FT                 VSMDICECTLGNRSSVYLVSVDHYSDYFDVDELTTQSAAAVVKICKRNFAR
FT                 LGKPQEISSDGGPQFMSEEFSTFCHSWGIKHSVSAPYHQQGNGKAESAVKI
FT                 TKMLLRKAYESKQDFWELLLQWRNTPNKTGSSPAQRLFNRRTRCGIPMYEK
FT                 KYLPKIEENVKEKIALNHRRAKSYYDRKARTLPELEIGQPVFVKMKPTDKE
FT                 WKRGTVTNPITDRSSVVAVEDRTYRRDNTMIKVRRSIEEPPSEALPIKEEK
FT                 DTAPSEVPETADYSSKIGSSSTVAVERPKRAIHVPKRFQDFEMY"
XX
SQ   Sequence 4280 BP; 1314 A; 947 C; 1025 G; 993 T; 1 other;
     acttgtttat ttaatatggt gtcagaattc gcgaataaca gttttacgat cccacgttgt        60
     aagttagttt tgttattttg aaaccgtcgc ggatatttcg agtcgtttaa ggcaaattga       120
     tgtgtcggcc ggtcggccgt gtctatcgag aagtgagcgt cgaacagaat gacggaaaat       180
     ccatcccaag cacaggctgt acgacagcca ccggcggctc cagaaatcaa cagcagtatt       240
     ccctttccgg acccgttgtg cagctggatg gcaacgtacg ggagaacgtg gaactgtgga       300
     aagatgcttt tgatacctac atcatagcat caggagtaga acagctggaa gagagagtga       360
     aaattgcgac gttcaaatct gcgctaggca cagaagctag gcggattttc aatctgtggc       420
     cccttcgaga cgaggaaaag aatacggtcg ctgcttgctt gcaatcattg tcctcgtata       480
     tgataccaca gaaaaacatc aagctggcac gatacgagtt ttatcaatgc caacaagagc       540
     ctggagatga cagccgtgaa ccagaaagca tgtcgaagtt catcaatcgg acccgtatgc       600
     tggtgaaaga ttgcaatttt ggtgatctgg aggacgaaat gctccgggat aaaatcatca       660
     ccggaattca tgatgttcgt ctgaagaaga aattgatcga aaccgcagaa ttgacttctg       720
     ccaaagtgat cgaactttgt caagctgaag aagctacccg agctgaaatg gaacgtaatc       780
     gatggctaga aagtcgacaa catggtgtaa acagaattgt tacagcgagc agggacagcc       840
     gacagtgcgg gtactgtgga cgttcttatc acaaaaatct atcggaatgt ccagcaagag       900
     gagcaacgtg tcgcttttgt ggatttaaga atcatttcga agcagtttgc aagaaaaaga       960
     aggagcagag caaacaaacc ggtatcccag gaccatcgag aagattagcg aagaaaacgg      1020
     tacacaccgt cgactgtgag acagatccgc caaccgttac tcagtccgac aacgaacaag      1080
     aatccgtaaa cgtctgccag tatctgtaca gcatcaatca ggataacgat ggattgctga      1140
     aagcaacact aacgtttctc aacgtaaatc agcgtgaacg taaagtacca tgcatccttg      1200
     attcgggagc ttcctgtaac gttgtaggaa agaggaatgc aatggagatt cttggtacga      1260
     agcagttatc ccttgacaat gaaagtgctg ttctgaatgt attcggagga ggcaagttgc      1320
     gctcgttagg ccgcacagaa atcgattgcg tacacaacgg atcacgtttc aaagctgttt      1380
     tccatgtggt ggatttcgaa caaccgccgc tgctatcgtt cagaacgtgt ctccagttga      1440
     agctgctaca agtatgtttt tctgtcacgg aggatcagag ggaagctgca agacgaatcg      1500
     tgaaccgcta cccagaggtc ttctccgggc ttggaaagct tgaaggaaaa gttcatctag      1560
     acgtcgacga cagtgttaag ccagtcgtgc agcacccacg gcgcgtagct gttacgcttc      1620
     gtgaaaacct tcgtcaggag ttgtcaaact tggtacagca aggagtaatt acagaagaaa      1680
     agcgacacac taactgggta agtaacctag tattagtaaa acggaatgac aaattgcgag      1740
     tatgcattga tccgatcatg ctaaataagg ctctggaaag accacactac cagatgccta      1800
     cactcgacga acttctgccg gagctcgcaa acgcgaaggt ttttacgact gtcgatgcta      1860
     aatccggttt ttggcagctc gagttggacg aagaaagctc gaaacttact acttgttgga      1920
     cacccttcgg tagatacagg tggcttcgaa tgccgatggg catttctccg gctccagaag      1980
     tgtttcaact gagagcgaat gaggccattc aaggcttgaa gaacgtacgt gcactgatgg      2040
     acgatttcat gatcttcgga tgcgggaata cgatcgagga ggcattgatc gatcacaata      2100
     gaaatctgca agcttttttg gagagaatga aggagaaaaa tctaaaactt aatccggata      2160
     aaatcagttt gtgcaaagac agtgttaaat actttggaca tattctaacg gccagcggtg      2220
     ttcaaccgga tccggaaaag gtgaacagca ttttgaatat ggaaaaaccg aaagacgttc      2280
     ctgccgccca aaggttcttg ggtatggtaa cctatttgtc acattatctg ccgagcctct      2340
     cgacactggc ggagcctcta cgtcgcttaa cataccatga tcaaccctgg acatggtccc      2400
     atgagcagga tgaagcattc gacaaggtga agcaagctgt aacatcggca ccagtgctaa      2460
     gatactttga cgcaacaaag catactacaa tacagtgcga cagtagtagt gtgggacttg      2520
     gcgcggtact cctccaggag ggacaaccag tcgtgtatgc gtcgaagacc ctcagcgcaa      2580
     ccgagcgtcg ttacgcacag atcgaaaaag aaacattggc tattcttttc gcctgtagaa      2640
     agtttgaaac gtacattctt ggacggcctg taactgtcca gactgatcac caaccgttga      2700
     tcaagatctt ccaaaagcct ctgacggaag cccctctacg aatccagcgt atgcttctag      2760
     cattgcaacg atacaacatc acgctgacgt tcaaaccagg taaagaaata gtaatagctg      2820
     atatgttgtc aagagctgcc catattgaca acgatattac cagccgcgac atttacgata      2880
     tattcgtaac tgatatagaa aacatttgtg cattggacta tcttcccatt tcagacgctc      2940
     gtgttgatga aattcgattc agatctcgag aagatccaga catccaatcc atcatcaggt      3000
     gcatcatcga tggatggccc cgtaggtacg atgaattgcc accagcaatc caaatatatt      3060
     ggaaatacaa aaacgagctc agcactcata atggcctcgt attgcgcaac gatcgaatcc      3120
     tgatcccgaa aagcctacga ggcgcgatta tggaaaggct tcatcaatca cattgcggcg      3180
     tagaagcgac taccaaacta gccagggata cggtattctg gcccggaatc accgatcaaa      3240
     ttcgacagcg tgtgcaacat tgtcatgtgt gtgcaaagtt ttcgtccaac caacaacccc      3300
     aacccatgca gagccatcaa attccttcgt atccgtatca gaaagtttca atggatattt      3360
     gcgaatgtac actgggcaac aggagttckg tttaccttgt tagcgtcgat cactactcgg      3420
     attattttga cgtggacgaa cttacaacgc agtcagcggc agctgtagtg aagatttgta      3480
     aacgcaactt tgccaggctg ggtaaaccac aggagattag cagcgatgga ggtcctcaat      3540
     tcatgagtga agaattcagc acattttgcc actcctgggg aatcaaacat agcgtatcag      3600
     ctccttacca tcagcaagga aatggtaagg ctgaatctgc ggtcaaaatc accaagatgc      3660
     ttttgagaaa agcgtacgag tccaagcaag acttttggga attgttacta cagtggcgaa      3720
     atacaccgaa caaaacagga agttctccag cccaacgact tttcaatcga cgaacacgat      3780
     gtggcattcc aatgtatgaa aaaaagtatt tgcccaaaat cgaagaaaat gtcaaggaaa      3840
     aaattgcatt gaaccaccgg agagccaaat cctattatga ccgtaaagct cgtacactac      3900
     cagaattgga aattggtcaa ccggtcttcg tcaaaatgaa gccaaccgat aaggagtgga      3960
     agagaggaac agtaaccaat cctatcacag accgttcatc agtggtagcg gttgaagatc      4020
     gaacatatcg tcgagacaac acaatgatca aggtaaggcg ttcaattgag gaacctccga      4080
     gcgaagcatt gccaatcaaa gaagagaagg ataccgcacc atctgaggtc cccgaaactg      4140
     ctgactacag ttcgaaaatt ggttcgtcat ctacagtagc agttgagcgt cctaagcgtg      4200
     cgatccatgt tcccaagcgt ttccaggatt ttgaaatgta ctgacaagga aaggcagctt      4260
     aaatttaatt gaaaaggaga                                                  4280
//
ID   Gypsy-261_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-261_AA_;
KW   Gypsy-261_AA-I; Gypsy-261_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 146 BP; 38 A; 31 C; 20 G; 57 T; 0 other;
     tgttatatta tcaataccta ttttgatgtg taccttgtga tgaatttact tgccaacctt        60
     tcattttgta ccttgatacg ttgtacctta cactcgcaca tccttgccaa taaaaagtca       120
     ttctttgttg aactgtacac gagtca                                            146
//
ID   Gypsy-262B_AA-I repbase;    DNA;    INV; 4322 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.01, Created)
DT   11-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-262B_;
KW   Gypsy-262B_AA-I; Gypsy-262B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4322
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4322
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 113-113 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4322 BP; 1253 A; 919 C; 1220 G; 924 T; 6 other;
     tgggggctca gccsggatgg agtttccgtg aaatctgcgc gaaaaaatag taaaatcggt        60
     cgttgaacgt tgtgaaaaag ttgatccgaa aaagcaagat ggctgatccg gtggtgaact       120
     tgtgttccac atttacgaga gtcggacttg agcgcgagtg taaaaagttg ggccttacga       180
     cgagaggcag caaagcagag atggcgaaga gaattgttgc tcataacacc aatacacctg       240
     caaacgatga tcgtcagagc accaacgacg aggtgcacga cggcagcctt ggtgacggtg       300
     agaacgatcc cagagacgac gcttccagca acgacgacgc tgctgacgac gacggcagca       360
     tgagtggtgc atccgacgac gcgggtaatc accacaacga cgacgaaaac gacgaagtga       420
     acagtagcag cgacgccgga agagttttcc acacagcttt gcactcgaca ccgaaaagca       480
     agaagatttc gagcaaagct tcccggccgt attctttccg cgatgtcgag gacagtattg       540
     aatctttcgg tgctgaagac ggccaagacg taaaagtgtg gatccgccag tttgaggaaa       600
     tatcagctgc tgcatattgg accgacgagc aaaggttgat tatgctccgg aaaaagttgt       660
     ccggaaccgc gagacgattt gtgttcaccc agcgcgatgt gggcacattt gcgaagttga       720
     aaagagctct aattgccgag tttgcacctc tcgtgagagc gtgcgacgtg catcggcagc       780
     tagcagcgcg taagaagaag ccgaccgagc cgaccagaga ttacatctat gagatgcagc       840
     ggattgctct tgctatcgag ctsgacgaag cgagcatctg tgaatacatc gtcgacggcg       900
     tgacagatga cgagtaccat cgctcaatgt tgtacgaggc acacaccatc aaacagctga       960
     aggaaaagtt gctcacatac gagaaagcac aggcgaaatc ggtcaagaaa caccgatccg      1020
     acgatcgatt cagcgccagc cagaaacgag agcgccgtga gaaaggagag gagaaaaaca      1080
     cgaaggcgaa atccgaagca aaacggcact gcttcaactg tggcgatcca acgcatgttg      1140
     ccagcgattg tccgcagaaa ggcgacggmc caaaatgttt ttcgtgtaac ggtttcgggc      1200
     atctatcgaa agagtgtgcc aagaaaggcg aagagcagag cacgaaaaag aagagtgcga      1260
     aagtaaacac gatcgaaaaa stgaacaaat ctcaaccggc cgtcagtgtg aaaataaacg      1320
     gctacgaagt accggccatt gttgatacgg gaagtgaaat cacattgatg cggaaggatt      1380
     tgtggttgga tattgagaag agtggcacca agctgggacg atccgatatg aaagtgcgcg      1440
     gatacggtgg gaaggtggaa atcgtttgcg gagaggtagt gttggacgcg aaaatcgaag      1500
     atgaagattt tgaaattcgt ttttacgttg tgcctcaaaa tgcaatcgac atgcaagtgc      1560
     tgatcggtat ggactttctc gatggtgtta attactcgat caccccggat ggtgtgcgtg      1620
     tccgaaaata tccgcccaga gccacggaag aagaagatgt gaagtggatc cgacggatcg      1680
     aagagtacga tgagaatgaa ctaacggtac cctatcagta tcgatcggac gtgatgaaga      1740
     ttatcgaaca gtacaaaccg gataccactg tgaccgcgaa aaatcctctg tcgatcaagc      1800
     tggcagataa cgacgtagtg cgtgaatgcc cccgacgtct tgctccgttg gaaaaggaga      1860
     ttgtgcgaaa gcaaataagc gagtggctcg ataatggtat cattcaaccg tcggaaagcg      1920
     aatatgccag tgcagtggta gtagttccga agaaggacgg ttcgcgccgc gtttgtgttg      1980
     actttcgcga agtgaacaaa aaggtgatcc gtgacaattt cccgatgccg aatgttgaag      2040
     agcaaattga tcagttggca aacgctcgag tttacactac gctggatttg aaaaactcct      2100
     actttcacgt gccagtggaa gagagtagca ggaagtacac tgccttcgtc actagtgaag      2160
     ggcagtacga atttctgcgt gcaccgttcg gtttgtgcac aagcggcaat gcgtttggac      2220
     ggttcatcag tgatgtgttt aaagacttga taatcgatgg cacaatagta gtgttcgtgg      2280
     acgatgtgat tattccctcc aagacggaag aagatggact cgaactgttg aagaaagtga      2340
     tgagtgttgc ggaaaaaggc ggactggtgt tcaactggaa aaagtgtgtg tttctccaac      2400
     gtcgagttga atacatcggc tatactgtgt acgatgggca agtggagccc gctccaggga      2460
     aaatcgagaa ggtgaagcat tttccccagc cgattaacgt gaagcagctg caacgtttct      2520
     acgggttggc aagctatttt agaaagttcg ttccgtgttt tgccgacatt gcacgtccgc      2580
     tgtccaacct aatgaagaaa gagagtgttt ttgtcttcga cgagaaagct gtagcgtctt      2640
     ttgacaggat caagaatatc cttgctagtt atccagttct acgaatcttc caaccggatg      2700
     tggagacgga ggtccacaca gacgccagca agatggccct agcaggtatt ttgatgcaac      2760
     gttgcgacga tgacggtaag tttcacccat gctactacta cagccgtttg acgaccccgg      2820
     ctgaacaaaa ttatcactcg tacgatttgg aagctttagc agtgatcgaa tctgttaaaa      2880
     agttccgttg ctatttgctg ggtcgtaagt ttaaaatcgt aaccgattgc atggcgttca      2940
     aggattccat gctgaagaag agggtgaatg ctagagttgc aagatgggca ggaatcttgg      3000
     cagaatttga ttacaatgtc gaacaccgat ctggagacaa gatgccccac gttgatgcgc      3060
     tgtcgagggc aaacgttttg cctatatctg ctgctgtgag tgcgaagatg cgtgctgctc      3120
     aagacgacga cgagatggta aaagcaatca aaatagctct ggaacaggaa ggaaccgttg      3180
     agggctactc cgtgtcgaat ggggtwctct acaaggagaa ggatggaaac cgacgtgtgt      3240
     tcgtaccaga agctatggag gtggaggtga ttcgatcggc gcacgagaaa gggcacttcg      3300
     gtgtgaagaa gacgacagag aggattgatg ccgattacta cattccaggc atcgaggaga      3360
     agatcaaacg gtgcatcgcg gcgtgcgttc cctgcatcgt tggcgaaaag aagagaggaa      3420
     agccggaagg tgagctgcaa ccgattccca aaggtgacgt accgatggat acgttccaca      3480
     ttgatcatct aggtccaatg ccgtccacca gaaaatcgta taattacatc ctgaccgtga      3540
     tcgatgcttt ttccaagttt gtttggttgt tcgccacaaa gtcgacgtct gctgatgagg      3600
     tgatcaagaa actccgtatm attaccgacg tttttggaaa cccaaggcgt attatttgtg      3660
     accgcggagc tgcgttcaca tcgacacagt tcaacaagtt ttgcgatgaa gagggcattg      3720
     aattgcacac gatcgttacg ggtgtccctc gaggaaacgg tcaagttgag agggtgcacc      3780
     gaatcataat accgatgttg accaagctgt ctgtggcgaa acctgatgaa tggttcaaac      3840
     acgtcgttcc tgtgcagaaa tgtctcaaca acagctggca acgagcaata cagacgactc      3900
     cattccagtt actgcttgga gtgaaaatgc gaacgaagga ggatgaagtc ctctatgagt      3960
     tgctcaacaa ggagatccag gaccagtttg aagaggagcg atacgaattg cgacagatgg      4020
     cgaacgagaa catccagaaa atccagcaag aaaaccggaa gtattacaat cttcgtcgta      4080
     agccggcaga aggatacagg aagggcgaca tcgttgcaat cccgaggacc cagttcggag      4140
     tcggccaaaa ggtgaagcac cggtactttg gcccatacga aatagttggc gttttgccaa      4200
     acgaccggta cgaagttcgg aagctcgacg atgaagcgga aggcccgaag agaacaacaa      4260
     ccgctggaga ctgtgtgaag ccgtgggcac ttccgggccg gaagtgaagt caggaaaggc      4320
     cg                                                                     4322
//
ID   Gypsy-262_AA-I repbase;    DNA;    INV; 4322 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-262_AA_;
KW   Gypsy-262_AA-LTR; Gypsy-262_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4322
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   'TTTA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..1703
FT                 /product="Gypsy-262_AA-I_1p"
FT                 /translation="MADPVVNLCSTFTRVGLERECKKLGLTTRGSKAEMAK
FT                 RIVAHNTNTPANDDRQSTNDEVHDGSLGDGENDPRDDASSNDDENDDAADD
FT                 DGSMSGASDDAGNHHNDDENDEVNSSSDAGRVFHTALHSTPKSKKTSSKAS
FT                 RPYSFRDVEDSIESFGAEDGQDVKVWIRQFEEISAAAYWTDEQRLIMLRKK
FT                 LSGTARRFVFTQRNVGTFAKLKRALIAEFAPLVRACDVHRQLAARKKKPTE
FT                 PTRDYIYEMQRIALAIELDEASICEYIVDGVTDDEYHRSMLYEAHTIKQLK
FT                 EKLLTYEKAQAKSVKKHRSDDRFSASQKRERREKGEEKNTKAKSEAKRHCF
FT                 NCGDPTHVASDCPQKGDGPKCFSCNGFGHLSKECAKKGEEQSTKKKSAKVN
FT                 TIEKVNKSQPAVSVKINGYEVPAIVDTGSEITLMRKDLWLDIEKSGTKLGR
FT                 SDMKVRGYGGKVEIVCGEVVLDAKIEDEDFEIRFYVVPQNAIDMQVLIGMD
FT                 FLDGVKLLDHPGWCACPKISAQSHGRRRCEVDPTDRRVR"
XX
SQ   Sequence 4322 BP; 1216 A; 971 C; 1267 G; 857 T; 11 other;
     tgggggctca gcccggatgg agtttccgtg aaatctgcgc gaaaaaatag taaaatcggt        60
     cgttgaacgt tgtgaaaaag ttgatccgaa aaagcaagat ggctgatccg gtggtgaact       120
     tgtgttccac atttacgaga gtcggacttg agcgcgagtg taaaaagttg ggccttacga       180
     cgagaggcag caaagcagag atggcgaaga gaattgttgc tcataacacc aatacacctg       240
     caaacgatga tcgtcagagc accaacgacg aggtgcacga cggcagcctt ggtgacggtg       300
     agaacgatcc cagagacgac gcttccagca acgacgacga aaacgacgac gctgctgacg       360
     acgacggcag catgagtggt gcatccgacg acgcgggtaa tcaccacaac gacgacgaaa       420
     acgacgaagt gaacagtagc agcgacgccg gaagagtttt ccacacagct ttgcactcga       480
     caccgaaaag caagaagact tcgagcaaag cttcccgacc gtattctttc cgcgacgtcg       540
     aggacagtat tgaatctttc ggtgctgaag acggccaaga cgtaaaagtg tggatccgcc       600
     agtttgagga aatatcagct gctgcatatt ggaccgacga gcaaaggttg attatgctcc       660
     ggaaaaagtt gtccggaacc gcgagacgat ttgtgttcac ccagcgcaat gtgggcacat       720
     tcgcaaagtt gaaaagagct ctaattgccg agtttgcacc tctcgtgaga gcgtgcgacg       780
     tgcatcggca gctagcagcg cgtaagaaga agccgaccga gccgaccaga gattacatct       840
     atgagatgca acggattgct cttgctatcg agctcgacga agcgagcatc tgtgaataca       900
     tcgtcgacgg cgtgacagat gacgagtacc atcgctcaat gttgtacgag gcacacacca       960
     tcaaacagct gaaggaaaag ttgctcacat acgaaaaagc acaggcgaaa tcggtcaaga      1020
     aacaccgatc cgacgatcga ttcagcgcca gccagaaacg agagcgccgt gagaaaggag      1080
     aggagaaaaa cacgaaggcg aaatccgaag caaaacggca ctgcttcaac tgtggcgatc      1140
     ctacgcatgt tgccagcgat tgtccgcaga aaggcgacgg cccaaaatgt ttttcgtgta      1200
     acggtttcgg gcatctatcg aaagagtgtg ccaagaaagg cgaagagcaa agcacgaaaa      1260
     agaagagtgc gaaagtaaac acgatcgaaa aagtgaacaa atctcaaccg gccgtcagtg      1320
     tgaaaataaa cggctacgaa gtaccggcca ttgttgatac gggaagtgaa atcacattga      1380
     tgcggaagga tttgtggttg gatattgaga agagtggcac caagctggga cgatccgata      1440
     tgaaagtgcg cggatacggt gggaaggtgg aaatcgtttg cggagaggta gtgttggacg      1500
     cgaaaatcga agatgaagat tttgaaattc gtttttacgt tgtgcctcaa aatgcaatcg      1560
     acatgcaagt gctgatcggt atggactttc tcgatggtgt taaattactc gatcaccccg      1620
     gatggtgtgc gtgtccgaaa atatccgccc agagccacgg aagaagaaga tgtgaagtgg      1680
     atccgacgga tcgaagagta cgatgagaac gaactaacgg taccctatca gtatcgatcg      1740
     gacgtgatga agattatcga gcagtacaaa ccggatacca ctgtgaccgc gaaaaatcct      1800
     ctgtcgatta agctggcaga taacgacgta gtgcgtgaat gtccscgacg kcttgctccg      1860
     ttggaaaagg agattgtgcg aaagcaaata ggcgagtggc tcgaaaatgg catcattcaa      1920
     ccgtcggaaa gcgaatatgc cagtgcagtg gtagtagttc cgaagaagga cggttcgcgc      1980
     cgcgtttgtg ttgactatcg cgaagtgaac aaaaaggtga tccgtgacaa tttcccgatg      2040
     ccgaacgttg aagagcaaat tgatcagttg gcaaacgctc gagtgtacac tacgctggat      2100
     ttgaaaaact cctactttca cgtgccggtg gaagagagca gccggaagta cactgccttc      2160
     gtgactagtg aagggcagta cgagttcctg cgagctccgt tcggactgtg caccagcggc      2220
     aacgcgttcg gacggttcat caccgacgtg ttcaaagact tgataatcga tggcacgatt      2280
     agtggcgttc gtggacgatg tgattattcc gtccgaggcc gaagaagaag gactcgaagt      2340
     gttgaagaaa gtgatgagtg ttgctgagaa ggccggattg cagttcaact ggaagaagtg      2400
     cgcgttcctg caacgtcgag tcgaatacct cggctatacg gtttacgatg ggcaagtgga      2460
     gccagctcca gcgaagatcg agaaggtgaa gcatttcccc cagccgatca acgtgaagca      2520
     gctgcaacgt ttctacggat tggcaagcta cttcaggaag ttcgtcccgk gttttgcgga      2580
     catcgcccga ccgctgtccg gcctgttgaa gaaagagagt gtttttgtct tcgacgagaa      2640
     agctgtagcg tctttcgacc gcatcaagga tatcctggcc agctacccag tgctgcgaat      2700
     tttccatcct gatgccgaga cggaggtcca caccgacgcc agcaaggaag cactggcagg      2760
     tattctgatg caacgggcga cgatgacggt aagttccacc catgctacta ctacagccgt      2820
     ctgacgactc sggccgagaa gaattatcac tcgtacgatt tggaagcttt ggcagtggta      2880
     gaatctgtca aaaagttccg tgttatctgc tgggtcgtaa gttcaaaatc gtacggattg      2940
     cgtggcgttc aaggattcat gccgaagaag aggctgaatc ctcgagttgc aaggtgggcg      3000
     tggatcttgg cagagtttga ctacaatgtc gaacaccgac ctggagacaa gatgccccac      3060
     gttgatgcgc tgtccagagc aaacgtgatg ctcatgtccg ctccgatggt cgcgaagatt      3120
     cgtgctgctc aagacgacga cgagaggtaa aagcgatcaa aatggctctg gagcagggag      3180
     gaaccgtcga gggctactct gtgtmgaatg gtgtcctgta cgaagaggat ggtggagacg      3240
     aagtgtgtwc gttccggaag cgatggagat ggaggtggtt cgatcggcgc acgagaaagg      3300
     acatttcggt gtgaagaaga tgaaggagag gatcgacgcs gactactaca tcccaggtct      3360
     ggacgagaag atcaagcggc gcatcgckac gtgtgttgct tgtatcgttg gcgaaaagaa      3420
     gcgaggaaag cctgaaggtg agctgcatcc gatcccgaaa ggtgatgttc cgttggatac      3480
     tttccacgtt gaccatctag gtccaatgcc gtccaccagg aagtcgtaca actacatctt      3540
     gaccgttatc gatgccttta ccaagttcgt tggctgttcc caacgaagtc gacgactgct      3600
     gatgaggcga tcaagaagct tacgtataat taccgacgtc ttcggaaacc cgagamggat      3660
     catctgtgat cgagggctgc gttcacatcg agacagttca agaagttctg cgatgatgag      3720
     ggcatcgagc tgcacacgat cgccaccgga gtccctcgtg gaaacggcaa gtggaaaggg      3780
     tgcaccgaat cataattccg atgttcacga agctgtctgt ggacaaaccg agaatggttc      3840
     aagcacgtcg ctgatgtgca gaagtgtctc aacaacagct ggcaacgagc aatacagacg      3900
     acccattcca gttgctgctt ggagtgaaaa tgcgaacgaa ggaggatgac gtcctacatg      3960
     agttgctcaa caaggagatc caggaccagt ttgaggagga acgaagcgaa ctgcgacaga      4020
     tcgcgaacga gaacatccag aagatccagc aggagaaccg gaagtattac aatctgcgac      4080
     gaagccggca gaagggtaca ggaagggcga cgtcgttgca atcccgagga cccagttcgg      4140
     gtcggccaga aagtgaagca ccggtacttt ggaccgtacg aaatagtcgg cgttttgccc      4200
     aacgaccggt acgaggttcg gaagctcgac gagaagmgga aggaccgaag aagacaacga      4260
     cggctggtga ccgtgtgaag ccgtgggcac ttccgggccg gaagtgawgt caggaaaggc      4320
     cg                                                                     4322
//
ID   Gypsy-262_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-262_AA_;
KW   Gypsy-262_AA-I; Gypsy-262_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 205 BP; 50 A; 44 C; 41 G; 69 T; 1 other;
     tgtggggcga atgggttatc cccctacccc gaaataaaga aaaacttttt actgtgtttt        60
     tgctacttcc gttatgatca gttcktagtt tgacgagatc gctcgcgccg tgcgtcattt       120
     tttatcgctg tgcaaagtta tcaaataaat cgatttgaag agatttcggg cgttatttca       180
     cttactccga ccaagacttt ctaca                                             205
//
ID   Gypsy-263_AA-I repbase;    DNA;    INV; 4892 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-263_AA_;
KW   Gypsy-263_AA-LTR; Gypsy-263_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4892
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [3933-4394] - Integrase core
CC   'CCAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2505..4340
FT                 /product="Gypsy-263_AA-I_1p"
FT                 /translation="MINFFVTLIRHICFISFRYITTFITHKGVFRYKRFMF
FT                 GISCAPEMFQKIMEQILADCECVINYIDDVFIFGETEQEHDEALRKVLEVF
FT                 NSRGILLNQAKCVFKVPEITFVGHRLSSKGVQPMEEKTAVLKSFRAPSSTE
FT                 ELRSFLGLVTYMGRFLPDLGTVTEPLRGLLRKGVSFHWEGRHEDAFQQIKT
FT                 MICNISHLHYFDNHFRTRLIADASPVALGAVLVQFSEADDIPRVVSYASKS
FT                 LSSTEKRYCQTEKEALALVWAAERFSMYLLGREFELETDHKPLETIFSPSS
FT                 KPCARIERWVLRLQSFKYVVKYRRGAANVADPFSRLATVTENNEFENEGKF
FT                 MVLAIMDSVAVDTDGIERASMDDAELCSVRECIQSGNWNKPEVKPYEVFRN
FT                 EIGVMDNIVVRGNKMVIPLSLRSRMLKLAHEGHPGESLMKRRLRDRMWWPG
FT                 MDREITKFVTMCDGCRLVGLPSRPEPMQRRPLPSRPWIDVALDFLGPLPSG
FT                 EYLLIIIDYYSRYKEIEIMNRITAKATIDRLERIFTRLGYPMTITLDNARQ
FT                 FISAELEQFCSEHGVHLNNTTPYWPQENGLVERQNRSVLKRLQISQSLQRD
FT                 WKADLNDYLMMYYT"
XX
SQ   Sequence 4892 BP; 1392 A; 1062 C; 1238 G; 1195 T; 5 other;
     aactggcgac gagctgaaga atccagcgtg gatgaatttg ttttgatttg gtaagaaata        60
     gagcggaaaa ttggctcgta caaacgcatc atttggccac aacaaattga ggttagcgta       120
     tgttgktttc gataataata gctggtgctg tcggtgccga attgtgaaat tgtgaatacg       180
     ggcgcttgga aagaatgtgc tactcaaact agttttacga ttgagcataa acacagagtt       240
     gagtttagcc aagaataaca aactgcagct atatggcatt cggaacacag catcgctgtg       300
     gtggtctacg agaccgtatg agattcagaa cacagcattg ctgtgatggt ccttgagacc       360
     atgtctgttg aagtaattac agtattgctg tacttaactt cagggtagta actgagtttt       420
     agaacgcaac actgttgcga tgatcctcga gatcatgtct gagaatatak aatagtatgg       480
     gtacwgatgg tcattgaaac cacacacgga acaaacgata ttagttccat tgcacaaaca       540
     aatggaatat aatttctaat gtgatacatc atggtatttt gttttatatt tctttagatc       600
     aagatggaca agtggaatat ccaaccgttc aatttcaaag cgctgcctgt tacgcaagtg       660
     agagatgcgt ggatcaaata caaacgtaac ttcgaataca ttgcattggc aaacgaagaa       720
     gagagccaaa cgaaattgca atatattttc ctcgcaaaag ccggaccaga tgtacaggag       780
     gtatttgcat cgttgcaagg aggggccgcc gggggcggcg cggccggccc cggggggggg       840
     gggcggcccc atagacgttg agaaatgaga aggataacga agcacccttc gatgacgtta       900
     ttgcgaagct ggacgaatat ttcgcgccac gccagcacga aacgtttgaa cgacacaatt       960
     tttggacgtt gaagcaaaat ccagatgagt cgctggagaa atttctgctg agagtaacgg      1020
     atcaagcgtc ggaggtgcaa ttttggcaag accaaagagg aaagtgccga aatcagtgtg      1080
     atcgacaaaa tcattcttct tgctccatca gatcttaaag agaggctgtt ggaaaaagaa      1140
     aagctttcgt tgaatgaact taccaaaatg gtgaattcct actcttcggt aaaattccaa      1200
     gcaagtcaga tgcaaccggc aacgatcaac agttaccgtt caatgctatc aacaaaagcc      1260
     agcgatcgca gaacaatcga tccgcccgtc ccggtgctct cgtgcggcga gaggtccaca      1320
     gcggaaacga tcatgcccgc caggacgagg atgcgcatgt gcaagccgga catttcgcga      1380
     gcgtgcgaac gcacgggccc taaggggacg gaaccggcca gaaccagggc gcaagcgacg      1440
     cgtgcgaacg atcaggcggg agggcgaacc acacagcttc tcgcgtgtcg gcgacgggga      1500
     gagtcttggg tcaagatcgg ggcgtgctcc aaacgcatga ctctggcgaa gaacatccgg      1560
     cgacgaactg ggagaattag gttcaaggcc aagtgaaatc cggacagtcc gactcacgtt      1620
     caggctacgg aaaggctcga ccctgggtag gaggtgttcg aggcggatca cgacggggga      1680
     aggccctcag gcacggcacg ttctcgtcgt tgcagaaggt tcacaatcca tacttggcaa      1740
     agagacggcc aaatctctgg gagtgctgtc gatcggattg ccaagtacac gttcaactgc      1800
     aataaacgcg atacgcgaaa acaatgacaa acgacctttt ccgaagatca aaggagtcca      1860
     acttcgcata ccgattgaca agaccgtttc gcctgtggcc ttgcaccgag tcccgcgggc      1920
     gggccgccgg gcggccgccg gcccccgcgg actcggcgcc attgcccaac acgctcgacg      1980
     accgccactt gctttgatgg atcgcattga ggagaaattg aacatgctgt tgaaggtgga      2040
     tataattgag cctgtgcatg aatacagcca gtgggtgtct ccgctggtgg caatagttaa      2100
     agacaacgga gacttgaggc tatgtgtgga catgaggcgc gcaaatgaag ccatacgtcg      2160
     agaaaaccat ttaatgccta ccttcgagga cttcttacca cgcctcaaga aagctaaatt      2220
     ctttagctta ctagacgtga aagaagcatt ccaccaggtt gagctcgaag agtcctgcag      2280
     gtaaataatt gattgatgat gattaaccat gttcattatt tccaacttgg gcagtggttc      2340
     ccagtctcgt tcattacgcg gaccacttta taatttcaag gtttacataa atcgcatttg      2400
     attggctatc ggcgcgtggt gttcaaattg aacactacat ttgagtggac actttgaatt      2460
     tgttgtttgt atttatctga aaaagcactg tttaaattca agatatgatt aactttttcg      2520
     ttactttaat caggcatatt tgttttatat ccttcaggta tattacgacg tttatcactc      2580
     acaaaggtgt attccgttat aagagattca tgtttggaat ctcttgcgca cctgagatgt      2640
     tccaaaagat aatggaacag atccttgctg attgcgagtg cgtgataaac tatatcgatg      2700
     atgtgtttat cttcggcgaa acggaacagg agcatgatga agcccttcgg aaagtgttgg      2760
     aggtttttaa ttcgcgcggg atacttttga accaagctaa atgcgtcttc aaagtaccag      2820
     aaataacatt cgtgggtcat cgtctttctt caaagggtgt gcaaccaatg gaagagaaaa      2880
     cagcagtcct aaaatcattc agagctccat caagtacgga ggaattgcgc agttttttgg      2940
     gactagtcac gtatatgggt cgttttctac cggatttagg cacagtgact gaaccactgc      3000
     gtggattgct ccgaaaaggt gtttcgttcc attgggaagg aagacatgag gatgcttttc      3060
     aacaaattaa gacgatgatt tgtaacatta gccatctcca ctatttcgat aaccattttc      3120
     gcacccgcct aatagccgat gcctctccgg tcgctttggg agccgttttg gtgcaatttt      3180
     cagaagcaga cgatatccca agagttgtaa gctatgccag caaaagcttg agctctaccg      3240
     aaaaaagata ctgccaaact gagaaggagg ctcttgctct cgtttgggct gctgagcgct      3300
     tctcgatgta tttgttgggc cgtgagtttg agctagagac agatcataaa cctctggaga      3360
     ctattttctc accwtcatct aagccgtgtg cgcgcatcga aagatgggtg ctacgcctac      3420
     aatctttcaa atacgtcgtt aaataccgca ggggagcagc aaacgttgct gatccgttct      3480
     ccaggctcgc gaccgttaca gaaaataatg agttcgagaa tgagggcaag ttcatggttc      3540
     ttgcaattat ggactcggtt gctgttgata ccgatggaat agagagagca tcaatggatg      3600
     atgcggagct ttgtagcgtc cgtgaatgca tacagtcagg caattggaac aaaccggaag      3660
     ttaaaccata tgaggttttc cgaaacgaaa taggagtgat ggataatatt gttgtacgtg      3720
     gaaacaaaat ggtcataccc ttgagtttgc gaagtcgtat gttgaagcta gcccacgaag      3780
     ggcatcccgg cgagtctctc atgaagagaa gattgcgaga tcgaatgtgg tggccaggta      3840
     tggaccggga gatcactaaa tttgtaacta tgtgcgacgg ttgccgactg gtgggactgc      3900
     cgtccagacc tgaacctatg cagcgacgtc cattgccttc gcgaccgtgg attgacgttg      3960
     ctttggattt tctcggccct ctcccatccg gagagtatct tttgatcata attgactatt      4020
     actcgcgata taaggagatt gaaatcatga atagaataac cgcgaaagca acgatcgatc      4080
     gtctagaacg tattttcact aggcttggct atcctatgac aataactcta gacaatgctc      4140
     gtcaattcat tagcgcagag cttgagcagt tttgttcaga gcatggagta catctgaata      4200
     acacaacccc ttactggccc caggaaaacg gccttgtcga gcggcagaat aggtctgtcc      4260
     tcaagcggct tcagataagc caaagtctgc agcgagactg gaaagcggac ctaaacgact      4320
     accttatgat gtactacacg wcaccacata ctgttaccgg aaaaacccca acggagttat      4380
     gtttcggtcg cactataaga tcgaagctac cttcattgca ggatgttgaa gttgcctatc      4440
     gggatgatga agtttatgat cgggaccgac tggctaaaca aaaagggaaa gagcaaggag      4500
     atcacaatcg tcgggctaca ccgtcaaata ttcagattgg agacgatgta ctgatgaaga      4560
     acttactgcc gaacaacaag ctgacaccga ctttcgaccc aaccgagtac gtggttttgg      4620
     acaaatctgg ggctcgggtt accgttcaga acaagagtaa cgataagatt tatcaacgaa      4680
     attccgccca tctgaagcag attcctaagc aggttgaccc acatcaaacc gttgacagta      4740
     acgaaaaccg ttcggaccgc gacacaatcg atgaagttga aacctctgga catgacacga      4800
     tctctaaggt gcgccggaat atccgacgtc ccctacgttt tgatgattat attttggatt      4860
     ccgagacttc gtctctaaaa gaacaaacga ga                                    4892
//
ID   Gypsy-263_AA-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-263_AA_;
KW   Gypsy-263_AA-I; Gypsy-263_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-194
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 194 BP; 62 A; 36 C; 43 G; 51 T; 2 other;
     tgtaatgatg taggtgcccg tccatcagaa acagagtagc acccagctac ggtagtgtga        60
     tgaggactcc ctcggtcata agagaagaac aatatatcag caacggcgtg cagactgcta       120
     gcttgtaatt cagtgaataa taaakgattc aagttgtaat amgtattgat taattcttat       180
     atcgagttcc caca                                                         194
//
ID   Gypsy-264_AA-I repbase;    DNA;    INV; 5418 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-264_AA_;
KW   Gypsy-264_AA-LTR; Gypsy-264_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5418
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [2385-2885] - Reverse transcriptase
CC   Positions [4020-4487] - Integrase core
CC   'ATCAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2169..4076,4080..5315)
FT                 /product="Gypsy-264_AA-I_1p"
FT                 /translation="MLVNHTGVSKEDRVVEDIKSKFSKVFDNDFSVPITSF
FT                 EADLVLKEDKPVFKRAYDVPYRLRDQVVEHIENLEKDGVITPIEASEWASP
FT                 VVIVVKKDKGIRMVVDCKVSINKLIVPNTYPLPVPQDLFASLSGSKVFCSL
FT                 DLAGAYTQLRLSKKSRRFMVINTIKGLYSYNRLPQGASSSASIFQKVMDQV
FT                 LKGLDGVFCYLDDVLIAGKDFEDCESRLYLVLDRLAKFNIKVHLKKCKFFV
FT                 SSLPYLGHVLTEQGLLPCPEKVETIRRAKPPNNVTELKAFLGLINYYGRFI
FT                 PNLSSRLSPLYSLLRKDTKYVWNDDCNEAFEDSKKLLLKPNFLEFYDPDKP
FT                 IVVVSDACGYGLGGVIAHVVGKEERPISFTSFSLNDAQKSYPILHLEALAV
FT                 VSTIKKFHKFLYGKKFTVFTDHKPLIGIFGKDGKNSIFVTRLQRYILELSI
FT                 YDFEIVYRPSTKMGNADYCSRFPLPQEVPRALQREYIKSINVSGDIPLDYR
FT                 TIAKETQHDEFLQQILSFMKTGWPKKLSQRFKDIYSNHQDLEELDGCLIFQ
FT                 DRIVIPTKLQNSVLKLLHRNHSGITKFKQLARRSVYWFGINSDIESFVKHC
FT                 RVCSQMAVVAKNSTQTSWIPTNRPFSRIHADFFYFQQKFLVVVDSHSKWLE
FT                 VDYMRYGTDATKVKSKFMAIFARFGLPDVIVTDGGPPFNSKYLIDFWSQQG
FT                 IQVLKSPPYHPSSNGQAERMVRAVKEVLKKFLLDPELKGLDIEDQISYFLF
FT                 NYRNICSEDNRFPSEKLLKFTPKTTLDLVNPKSSFKKHLTTHTCEDSLIVK
FT                 NDKPAVPDKFSQLRHGEPIYFKNFRATEVKRWLDAKFLKRLSPNVFQVSVG
FT                 GRIYSAHRDQLKLKPRPPKTLVCGWKPSRKRQREDDEEYSDDSNSSDFYGF
FT                 LADSFINEPQQQQTVEVGSSLSIPSTSDNSLSIPSSSSNSLSKHVTGNSLS
FT                 VDEMASSGSSLLPSSGVQMPMSANSCIPTSSREDGAFEVSSGDYRSSSHGS
FT                 SVPVDHRKSVDHQKASISRNVVQPRRSRRTKRQKQNSEFYYY"
XX
SQ   Sequence 5418 BP; 1512 A; 993 C; 1271 G; 1597 T; 45 other;
     gtggcgaacg aggtgaaaat tttgatttta aaacgggttt cgctaagcat tttccgcgac        60
     tcgcgagtga tatcgtttta attcgatccc cgtggtgtgc agtgagtttg gagcaattag       120
     tggtgcaaag attttgccgc caaagtgcaa tattaatcta tcgcttacag atcacctcaa       180
     gtgtggttga tcacgtgtgg tgcgataatc gttttattgc ctaattgctc tgcagaaggt       240
     ttgagattat tgaaaatcgt ttgtgctatt tccagcaagt ttaatacagc acacatcacg       300
     tgtttgaaaa ggtttagtga tctgctagtt tgtgctgagt gtgattcagg tatccaccat       360
     tgttttttga tcaccaaaag gacgctaaag ttgtttgacc tgtgtgaacg accaacaaag       420
     agcattcagg aggtcagttc gggtcagtag tgtgcactgg agaacaaata gatagtgaaa       480
     aaaagcgttt tgttctacag cagtttcaac gttgtaagtg gcttgggtgg atcagccaat       540
     ttctgcaatt gtttgtttgg acaagttttg tggatcatcg ttgagagttt tggcctacag       600
     ctaccaggta tgttttaaat tgttttattc gtttttggtt taatttgttt tgttgtgatt       660
     gcggttgtgc gtgtttgttt ttttttccga agttatttaa aaacttgagc gatctaagtt       720
     tgttttcttc atcatttgtg tctctctggg agtagtttga aatttatgct agtacaacgt       780
     attatgtgtt tgtagttgat tttktttttc gtaaaatatc aaaaattata ctaaatttag       840
     aagttgatct tttttttcgt ttctccgttt gtttctaatc tttattaaag cgacaatgcc       900
     aattatgagt acaattgaac cgttccatcc agatggaagc ataactttct cgcaatatct       960
     ggatcaactg gagtggattt acttgcatca aaaagtagca gatggggata agaagactac      1020
     attccttgca tcgtgtggta ccgctgtcta cagtgagctc aggttgctgt accctggccg      1080
     aaatcttgaa agatattgaa tacaaagatt tgacagattc gctacgtaaa cgtttcgaca      1140
     aaagtgaaag tgatttagtc caacgtatca aattttatgc gagggtgcag aaacctggcg      1200
     aaaaagccgt agattttgtc ctggcggtaa agcagctggc agagtactgt aacttcggca      1260
     cgtttaagga gacggcaatt cgtgacaggt tgctgtgcgg cgtttcaagc aagcagctac      1320
     aggagcggct cctagatgaa gaggatttaa cccttgctag ggccgagcgg atcatagcca      1380
     accgcgagga ggctgctgag cgattgacat caatcgggct agtctgatga atgaaccaga      1440
     aacaggtaga gttagtgcca ttgaacgttt tggaggtagt aagagggttg gttttcgtcg      1500
     agatggccca ccgccgcttc ttcacgtgct aggagtaggg gtcgtgagaa tcacgacckk      1560
     cgtaaccgtt tgaacggcag ccgsagtmgt agcaggagcc kttctgmccc gaggaagagt      1620
     ggtaaaaagg tctactwctg cacktactgc cgcaggaagg gtcacacccg caagtactgc      1680
     tacgacctga agcaccakaa gccatcsgtw aagtckgtmg ccgtcgwgmc gaagaaacca      1740
     gacctscckg asmggtttca agaagagcag ctaagtcgtc ggactckgaa gaggamatgg      1800
     acgttctsat ggtktctgct agtcggcgwt swagcaccag cgaaccwtgc ctgatcgawg      1860
     cwwkcgtsgg cggtgaaamc ttgcggatgg agatmgacag cggatctgcw gtctccgtga      1920
     tcagcaggca ggcgtacggg magcgcttca aagacwascc gwtgggkasg tgtmgcmtta      1980
     agctggcagt cgtcgatgga gcgcgtctgt tggtcgcggg tcgaatcgca gttttggcga      2040
     aggttaacgg acgtcgcgga aaacttcctt tagtggtgct ggagagcgca aaggagatca      2100
     caccgctgct aggcagggac tggcttgacg ttttcttccc agcctggcga gatgcattcc      2160
     gaggaccgat gctggtgaac catactggcg tttcaaagga ggacagggtc gttgaagata      2220
     taaaaagtaa gttttcgaag gtttttgaca atgacttctc cgttcccatt acaagttttg      2280
     aagcagattt ggtactcaag gaagataaac ctgtttttaa acgggcttat gatgttcctt      2340
     atcgtttgcg tgaccaggtt gttgaacata tagaaaattt ggagaaagat ggagtaatta      2400
     ctccaatcga agcaagtgag tgggcttcac ctgttgtcat cgtcgtcaag aaagataagg      2460
     gaatccgtat ggtggttgac tgtaaagttt ccatcaataa gctcatagta ccaaacacat      2520
     acccgttgcc tgtgcctcaa gacttgtttg cttcgctgtc cggttcaaaa gttttttgct      2580
     ctcttgatct tgcaggagca tatacccaat tgcgtctttc caagaaatcc agaagattta      2640
     tggtgatcaa tacgatcaag ggtttatatt cgtacaaccg tttgcctcaa ggagcatcta      2700
     gcagtgcttc tatttttcaa aaagtgatgg atcaagtttt aaaaggtttg gatggtgtat      2760
     tttgctattt agacgatgtg ctaatagccg ggaaggactt tgaagattgt gagagtagac      2820
     tttatttggt cttggatcgt ttggccaagt tcaatataaa agttcattta aaaaaatgca      2880
     aattttttgt ttccagtttg ccttatttgg gacatgtgtt gacagagcaa ggtttgttgc      2940
     cttgtcctga aaaagttgag acaattcgta gagccaagcc tccgaataac gtcacggagt      3000
     tgaaggcatt tttgggtttg atcaactatt atggtcgctt cattcccaat ttatcctccc      3060
     gccttagtcc actttacagt ttgctaagga aagatactaa atacgtttgg aacgatgatt      3120
     gtaacgaagc ttttgaagat tccaaaaaac ttttattgaa accaaacttt ttagaatttt      3180
     acgatcctga caaaccaata gtcgttgttt ccgatgcctg tggatatggt ttaggtggtg      3240
     taattgcgca tgttgttggt aaagaagaaa gaccaataag ttttacttcg ttttcgctga      3300
     acgatgcgca gaaatcgtat ccaattttgc atttggaggc acttgctgtg gtaagtacga      3360
     taaaaaagtt ccataaattc ttgtatggaa agaaattcac agtttttaca gatcacaagc      3420
     ctttgattgg aatttttgga aaagacggca aaaattcaat ttttgtaact cgtttacaac      3480
     ggtacatttt ggagttatcg atttacgatt ttgaaatcgt ttatcgtcca tcaacaaaaa      3540
     tgggtaatgc cgattactgc tcccggtttc cgttgcctca agaagtgcca cgtgctttgc      3600
     agagagaata catcaagtca attaacgttt ccggtgatat tcctctggat tacaggacta      3660
     tagcgaagga aacacagcat gacgagtttc ttcagcaaat tttatctttc atgaaaacag      3720
     gttggccgaa gaaacttagt caaagattca aggatatcta ttcaaatcac caagatttgg      3780
     aggaactgga tggttgttta atattccaag atcgtatagt aattccaacg aagttacaga      3840
     attcagtttt aaaacttctt catagaaacc attcaggaat cacaaagttt aaacagttag      3900
     ctagaaggtc ggtttactgg tttggaatca atagcgatat tgaaagtttc gttaaacatt      3960
     gcagagtttg tagtcaaatg gctgtggttg caaaaaactc aacacaaacc agctggattc      4020
     caacaaatcg cccttttagc aggattcatg cagatttttt ctattttcaa cagaaattkt      4080
     tccttgtcgt agtcgacagc cattcgaaat ggttggaggt ggattacatg aggtatggta      4140
     cggatgcaac aaaggtaaaa agcaaattta tggccatatt tgcaaggttc gggcttcctg      4200
     acgttattgt gactgatgga ggccctccgt ttaactccaa atatctgatt gacttctgga      4260
     gtcaacaagg catccaagtt ttgaaaagtc cgccatacca cccctccagt aatggccagg      4320
     ccgaacgaat ggttcgcgca gtaaaggagg ttttgaagaa gttcctgcta gatcctgaat      4380
     taaaaggttt agatattgaa gatcagattt catacttttt gtttaattat cgaaacattt      4440
     gctcagaaga caaccggttt ccttctgaaa aattgcttaa atttacaccg aaaacgacat      4500
     tggatttagt caatccaaag agcagcttta agaaacattt gacaactcac acttgtgagg      4560
     attctcttat agttaagaat gacaaacctg ctgtaccaga taaattttct cagctacgac      4620
     atggagaacc aatctacttc aaaaacttta gggctaccga agttaagagg tggttggacg      4680
     ccaagttttt gaaaaggctg tctccaaatg tatttcaggt ttcggtcggt ggtcgaatct      4740
     attcggctca tcgcgaccag ctgaagttaa agccaagacc gcccaaaaca ctcgtttgtg      4800
     ggtggaagcc tagtagaaaa cgacagagag aagacgatga agaatacagc gatgattcga      4860
     acagcagcga tttctacggt tttttggcag actccttcat caatgagcca cagcagcaac      4920
     aaacagttga agtcggcagt agtttgtcga ttccttcaac tagcgacaat agtttgtcga      4980
     ttccttcaag tagtagcaat agtttgtcca agcatgtaac aggcaatagt ttgtctgtag      5040
     acgagatggc gtcgagtggc agtagtttgc taccttcatc aggcgttcaa atgcctatga      5100
     gcgcaaattc ttgtatacca acaagttcga gagaggatgg cgcgttcgaa gtgtcgtccg      5160
     gcgattatag atcttcaagt catggctcaa gtgtgccagt tgaccatcgt aaatccgttg      5220
     atcatcagaa agcatcaatt tctcggaacg tcgtccagcc aaggcgatct cgtcgaacaa      5280
     aacgtcagaa gcaaaacagt gaattttatt attattaatg tttaagtcta tatttgaatt      5340
     tttaccagtt aagcttgtaa tatcgaattt taatggaatt gtaagcaacg tcttaagagg      5400
     agagaactgt tgtatcag                                                    5418
//
ID   Gypsy-264_AA-LTR repbase;    DNA;    INV; 180 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-264_AA_;
KW   Gypsy-264_AA-I; Gypsy-264_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-180
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 180 BP; 49 A; 44 C; 36 G; 51 T; 0 other;
     tgtttaacgc aacacgagct taccagccct gcgaccaacg aactgtagat cggttcgttt        60
     ggacgatcta ataaagagat gctcagtcta agtttgagcg tgcatagaag aacatatctc       120
     ggtgtacttc tttccctcgg taccgaaacc tctttaatac taaatccctc ggttagttca       180
//
ID   Gypsy-265_AA-I repbase;    DNA;    INV; 5402 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-265_AA_;
KW   Gypsy-265_AA-LTR; Gypsy-265_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5402
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2636-2636 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4074-4544] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           873..4280
FT                 /product="Gypsy-265_AA-I_1p"
FT                 /translation="MSTIIGSVDHYVRGSSFASYLKRMNILYQLNNIPENN
FT                 KKNLFIALSGSVIFDEIELIYPGKDIAEIEYNDMITKLKERLDKVQPNMMH
FT                 RHKFHARLQGIDEPAENYVLALKLLASHCGFGAHKDEAIKDKIIFGLRDQD
FT                 LKHKLLMRDDMTLEEVEQMVIRTELAKYRAKELAERNEDPREINSVKYRLG
FT                 NQDPWNNTNRYGRQYSRGYTRRYRSRSRSLSGERERAHYNNNRYDNHRRDR
FT                 NHYDSQPSTSYADRRGYGESNPHQNVICNFCKLRGHVKRNCYKLKNRKNVN
FT                 FVEDAPIEINSYDFKRMQIRDSMDEDDDYPCMMIASKQFSKPCIVEVFVEG
FT                 IMLSMEIDCGAAVTVISLESYRTYFNHIEVSKCTSRLVVVDGQQLSIFGQI
FT                 LVKVVANHVEQRVPLIILDCTRRFVPLFGRNWLDIFYSNWRNTFGNSLGIN
FT                 AVNGDVVSRLGSNIDMGNIESTIKSRFPKVFDSDFSYPITGFEADLVLRED
FT                 KPIFKKAYDVPFKLREKVVEHLDSLEKQNVISPIQVSEWASPVVIVPKKDN
FT                 DIRMVIDCKASINKQIIPNTYPLPLAQDIFASLAGCKWFCCLDLAGAYTQL
FT                 KLSKRSRKIVVINTIKGLYTYNRLPQGASSSAAIFQKVMDQILIGLKHVRC
FT                 YLDDVLIAGETKEECLSNLYLVLGRLQEANLKVNYKKCKFFVNSLIYLGHL
FT                 VTEKGLLPSPEKLLTIEKAKVPSNTTELKAFLGLINFYGKFVPHLSAKLSC
FT                 LYALLRKDTKFVWSEQCQNTFEESKQALLDADFLEFYDPAKPIIVVSDACN
FT                 YGLGGVIAHMVDGREKPISFASFSLNAAQKTYPILHLEALALVCTVKKFHK
FT                 FLFGQKFTIFTDHKPLLGIFGKDGKHQLCVTRLQRYVMEMSIYEFEIQYRP
FT                 SSRMGNADFCSRFPLDQGVPEKLDSGCIKSINFTADFPLDYALIAKESKTD
FT                 LFLAKVTDFIINGWPAKVENSWRQVFSLRFDLEVVKGCILFQDRVFIPVSL
FT                 RHNILKLLHTNHNGIVKMKQTARRSLFWFDLNKDIEQFVKNCEPCIKMSVV
FT                 PKQDCHTSWIPTNRPFSRIHADFFFLESKTYLLVVDSYTKWLEVEIMKYGT
FT                 DANKVIRKFTAIFARFGLPDVLVTDGGP"
XX
SQ   Sequence 5402 BP; 1820 A; 839 C; 1176 G; 1565 T; 2 other;
     agtgtcgacg agttgagaag cattttaagt tgaacttagc gaattagtca aggaaagaaa        60
     gtgttttttt tttcgcagcg gctagtggta gcgtgcatta aggccgtgca gcgtggattt       120
     ttttttcttt agtgaactta tcagagcatc acagtagttt gtggtcagtg ggctgtaaga       180
     agagaaagtg aggcatctga ctagaacaaa atagaatact aaatctaaca aacgaaatag       240
     taacgaagtg gtcataaatt ccagaaattg tatggtattc ttggtgagtt tgttcacata       300
     gtttgtaaaa agtaaggtag ccattgtaat ttttctgaag ccgcttggtc cgccatttta       360
     ttggtgtaga agtgaaactg ttgagtattg aagagaattt cgagctggtg agcaaaagag       420
     aattcctatt gtgacattgt gaaaagaagt aagaaaagct gttggatcgg tgtaattagc       480
     tgagccgatt tggtggtgaa gattttaaag agagaacgag aagtactgaa agagaaaatc       540
     aatagcaata gttgtttgta gagagtgaat ctagtactgc ttggagactc atcggtgaga       600
     gtgagcattg tatgagaaga agcgtcaatg agacaaagtt gacaaggcca acataagtga       660
     gattgaacgt cggtgagacg aacattggtg agaaaaacgt tagcgagtca agtttttgtg       720
     aggtgattgc tgctgaggtg aattttgacg aaccgccgat cacggatcaa ttggagtaac       780
     gcctggagag taagaaatag cacagcacgt aagtctattc actctaattg tgtgtcattt       840
     gagggttaat tttgttacat ccaatcatca gcatgtctac tattatcgga agtgttgacc       900
     attatgtacg tgggtccagc tttgccagct atttaaagcg aatgaatatt ttgtatcagc       960
     taaataatat accggagaac aacaagaaaa atctgtttat agcactcagt ggttccgtta      1020
     tatttgatga aatagagcta atataccctg gaaaagatat tgcggagatt gagtataatg      1080
     atatgattac taagttgaag gaaagattag acaaagtgca gcccaacatg atgcacaggc      1140
     ataaatttca cgcgcggtta cagggtattg atgagcctgc agaaaactat gttttggctt      1200
     taaaattatt agcaagccac tgtggttttg gagcacataa ggatgaagca attaaagata      1260
     aaataatttt cggtttgcga gatcaggact tgaaacataa attgctgatg agggacgata      1320
     tgacgttaga ggaagttgaa caaatggtga ttaggactga gttagcaaag tatcgtgcga      1380
     aagagttagc agaacgaaat gaggatccaa gagaaataaa ttcggttaaa tatcgtttag      1440
     gaaatcaaga tccgtggaat aatacgaata gatacggtag acaatattcg agaggttata      1500
     ctagacgata tcgtagtaga agcagaagtt taagtggaga acgtgagcga gcacattaca      1560
     ataataatcg atatgataac catagacggg atcgtaacca ttatgatagc caaccgagta      1620
     ctagttatgc agatcgtcgt ggatacggag aaagcaatcc tcatcaaaat gtgatttgta      1680
     acttttgtaa actgagaggt cacgtaaaac gcaactgtta taaattaaaa aatcgtaaaa      1740
     atgtaaattt tgtggaggat gcaccgattg aaattaacag ctacgatttc aagaggatgc      1800
     aaataaggga ttccatggat gaggatgatg actatccctg catgatgata gctagtaaac      1860
     aattcagtaa gccatgcatt gtggaggtct tcgttgaagg tattatgctg agtatggaaa      1920
     tagattgcgg tgcggcggtt acggttataa gtttggaaag ctatagaaca tactttaatc      1980
     atatcgaggt ttctaaatgt actagtcggt tggttgtcgt tgatggtcaa caattgtcta      2040
     tatttggtca aatattggtg aaagttgtgg caaatcatgt tgagcaacga gtgccactaa      2100
     tcattcttga ctgtacaaga cggtttgtgc cgttatttgg tagaaattgg ctggacattt      2160
     tctattcaaa ctggagaaat acgtttggaa attcgttagg gatcaacgca gtaaacggag      2220
     atgttgttag cagactaggc tctaatatcg acatgggtaa tattgaatca acaattaaat      2280
     ctcgttttcc taaggtattt gatagcgatt tctcatatcc aataacaggg tttgaagctg      2340
     acctcgttct tcgagaggac aaaccgatat ttaaaaaagc ctacgacgtg ccgtttaaat      2400
     tgagagagaa ggttgtagag catctcgatt cgcttgagaa acagaatgtt atttccccaa      2460
     tacaggttag tgaatgggcc tccccagtag tcatagtgcc aaagaaagat aacgatataa      2520
     gaatggtaat agattgtaaa gcatcgatta acaagcaaat tattcccaat acatatccac      2580
     tacctctagc gcaagatatt tttgcgtcac tagcaggttg taaatggttt tgttgtcttg      2640
     atttagcggg ggcttacact caactaaaac tatcgaagcg atcaaggaaa attgttgtta      2700
     taaacacaat taaggggctc tatacttata atcgacttcc tcagggtgcg tcgtctagtg      2760
     ccgctatatt tcaaaaggtt atggaccaga ttttaatagg tttaaaacac gttcgttgtt      2820
     atttagacga tgtattgatc gctggagaaa ctaaggaaga gtgcttatct aatttatatt      2880
     tagttcttgg aagattacaa gaagcaaacc tgaaagtaaa ttataaaaaa tgcaaatttt      2940
     ttgtcaattc actaatttat ctcggacacc tagtcacaga gaaaggactt cttccatctc      3000
     cagaaaaatt actaacaatc gaaaaagcca aggtcccctc caatactact gaactcaagg      3060
     catttttagg gttaattaat ttttatggaa aatttgttcc tcatttatca gcaaaactta      3120
     gctgtttata tgctttgttg cgtaaagaca caaaatttgt ttggagtgag caatgccaga      3180
     acacattcga agaaagtaaa caagccttgt tagatgcaga ttttctagaa ttttacgatc      3240
     ctgcgaaacc gattatagtt gtatcggacg cttgcaacta tgggctggga ggagtcatag      3300
     cccatatggt cgatggaagg gaaaaaccta ttagttttgc atctttctca ttaaatgccg      3360
     cacaaaaaac ctaccctatc ctacatttgg aggcattagc actagtgtgc actgtgaaaa      3420
     aatttcataa atttcttttt ggccagaaat ttacaatttt cactgaccat aaaccacttt      3480
     tgggaatttt tggcaaagac ggtaagcatc agctatgtgt gacaagatta caaaggtatg      3540
     tcatggaaat gtctatatac gaatttgaaa ttcaatatag gccatcatct aggatgggaa      3600
     acgcagattt ctgctcaaga tttcctcttg atcaaggtgt tcccgaaaag ctcgatagtg      3660
     ggtgtattaa gagtataaat tttactgccg attttccatt ggactatgca ttgattgcta      3720
     aagaaagtaa aactgatctt ttcttagcaa aagttacaga tttcataatt aatggttggc      3780
     ctgctaaagt ggaaaattct tggcgtcaag tattttcatt acgttttgat ttagaagttg      3840
     tgaaaggatg tattttattt caggatcgcg tttttatccc tgtttctctt agacataata      3900
     ttttaaaact gctccacacg aaccacaacg gtattgttaa gatgaagcaa acggcccgcc      3960
     gatcattatt ttggtttgat ttgaacaagg atatagagca atttgttaaa aactgcgagc      4020
     catgtataaa aatgtcagtg gttcccaagc aggattgcca tacgtcatgg attccaacta      4080
     atcgtccttt cagtcgcatt cacgccgatt ttttcttcct agagtcaaag acttatttac      4140
     tagttgtaga tagttacact aaatggctgg aagtagaaat tatgaaatat gggacggacg      4200
     ccaataaggt tataaggaaa ttcacagcca tttttgcaag atttggactt cctgacgttc      4260
     ttgtaacgga cggcggtccg cngtttaact ctggatattt tgttgctttt atggaacgtc      4320
     agggaataaa agtaatgaaa agtcctcctt ataaccctag cagtaacggt caagctgaga      4380
     ggatggttag gctagtaaaa gacgtattaa agaaatttct tttggacccc ttgacgagat      4440
     cactcgatga agaggatcga attacttatt tcttagcaaa ttatagaaat acatgttccg      4500
     cgtctgacga cagttttcca tctgagaagt tattaagttt caaaccaaag agtctagtag      4560
     accttataca tcctagacga ggttacaaga attatttaat acaagatgga ttttcttcct      4620
     caagtatacc tgtagagcaa acaacaaaaa ttcaagcgga taacacatca tcccaagatc      4680
     catttctcaa tctaacacta ggggatcgta tatggtataa aaataatgat aaatatgcaa      4740
     ttgagaaatg ggtggaggcg aaatatgtca aaagagtatc gactaatgtt tttgaaatct      4800
     cttttggcag gcataattgc aacgctcaca ggagtcaact gaagattgca ggtcctcgac      4860
     aatccaactc gaagactcaa gtgtctatac aacgagagaa gcgacgaaga gactccttag      4920
     actctgaaga agaactgctc ggatttccgt acgaggccac cgaaactgag cagaacatcg      4980
     agaagaaacg agttaaatgt acaagaacta gcccgatagc aacgcgaagt tattcgcgat      5040
     cgaaaagaga tggttatcaa gaaaatcgtt ttcaaaaaaa ctcccagtag caatgttaag      5100
     aacgatgaat cgccattgag tcctggggga aacaaaaaaa aaagaaagaa aaatgtaaag      5160
     tttaaaattc taataatttc gaagaattca attatagaag taagaagcaa acgaatacta      5220
     aacgaaacta ttgagnattt gattattgta agacatgttt gaataagtat aatgcatatg      5280
     tgattgttag atagaaaacg ttctattatc ataattcaag tgaataatga gttcgaagat      5340
     tacaccgatg ttaaaagcaa taaaaaaaaa tattataatg tcagatctaa aggaggaaga      5400
     at                                                                     5402
//
ID   Gypsy-265_AA-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-265_AA_;
KW   Gypsy-265_AA-I; Gypsy-265_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-193
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2637-2637 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 193 BP; 63 A; 31 C; 38 G; 61 T; 0 other;
     tgtaatgttc gggtaaatag acagaaccct ttgagagagt cgttacgaga acgataatct        60
     atttgtatga gagaggaaac ttaccctaat aaacttactc gagattcggt ctcttgtact       120
     ttgaattcca aacgaagcag acgtgatttt ttattatcta aaagttaaga atttccctgg       180
     tgtgaacata tca                                                          193
//
ID   Gypsy-266_AA-I repbase;    DNA;    INV; 5071 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-266_AA_;
KW   Gypsy-266_AA-LTR; Gypsy-266_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5071
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
CC   Positions [2106-2483] - Reverse transcriptase
CC   Positions [3741-4211] - Integrase core
CC   'CAAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           996..4889
FT                 /product="Gypsy-266_AA-I_1p"
FT                 /translation="MSTTSSASFIKPFIPGSVSFHKYLEDLNREFMHRGVY
FT                 RKEKQKASFLASCAAQVFSELKQIFKERSLKDVSFGEITDALRKRFDGTEA
FT                 EAKESLIHGVSTNRSLPSSFKQSFSHNDKNSLPSHSRKLFCSFCHREGHIR
FT                 RFCFDRKNDEVKFVDSSAVQSQSLDVSNSLSCESEFSCEETDCLTFSVNRI
FT                 NEPCYRTVYVDGIRLKMEVDCGAAVSVIDSSMYEEEFDHIPIEPCDKKLAV
FT                 INGSRLKVYGKIQVLVELDGRSEVVNLIVLRSENRFTPLLGRDWLDLFIPS
FT                 WRSVFATRSINQLAVSHDQILVDVKRKFANVFDKSLSTPIKGFEADLVLKD
FT                 HTPMFRRAYDVPLRLKDKVVEHLESLEKDGVITPVDASEWASPVIVVVKKS
FT                 GDIRMVIDCKVSINKVIIPNTYPLPLAQDMFASLAGAKVFCSLDLAGAYTQ
FT                 LKLSKKSRKIMVINTIKGLFTYNRLPQGASSSAAIFQRVMDQVLKGIDGVY
FT                 CYLDDVLIAGRDEKDCLRKLYLVLERLSNANIKVNLQKCKWFVTSLPFLGH
FT                 VLTDKGLLPCPEKVETIRRASVPNNVSELKAFLGLINYYGKFIPNLSSRLS
FT                 CLYRLLRKDVKFVWTAECTSVFEDCKLSLLKSNLLEFFDPCKPVVVVTDAS
FT                 SYGLGGVIAHDIDGEERPISFTSFSLTNAQKSYPILHLEALAVVSTIKKFH
FT                 KFLFGKKFTVYTDHKPLIGIFGKEGKNSLFVTRLQRYVLELNIYDFDIVYR
FT                 PSSKMGNADFCSRFPLPDEVPVALQREFIKSLNVSSELPLDYVLVAEETKQ
FT                 DEFIQQIVYYLKHGWPKKLERSLLDVYAHHQDLELVDGCLLYQDRVFIPVS
FT                 LQKQILKLLHKNHSGITKIKQLARRTVYWYGMNSDIESFVKSCSVCCQMNA
FT                 VAKQVPHSSWIPTNKPFSRIHADFFYFDEKVFLVIVDSFTKWLEVEYMKYG
FT                 TDARKVNSTFMSVFARFGLPDVIVTDGGPPFNSKEFTDFMERHGVKVMKSP
FT                 PYNPSSNGQAERMVRVVKESLKKFLLDPELRSTTTEDLVSYFLFGYRNSCL
FT                 EEDNKFPSERLFSFKPKTLLDLIHPRNSFKNHMTKPTSVENPKQDTKDYRK
FT                 PDWTDKLCPGDTVYYKNFRTTDIRRWLEAKFQKRVSSHTFQVSVGGRVYLA
FT                 HRNQLKQAGNDKSRRYVTFSRGKEYGRSRKRTREDDEESDSDDAEDFYGFP
FT                 ADSFVFRDNCENPLNDSRDGSGEVVAGSMSPEELDCGVPDRGVSQADEVDP
FT                 LEGPSSRCSSSSDRQKASLRRSRRIKRFRRDNEYVYY"
XX
SQ   Sequence 5071 BP; 1408 A; 802 C; 1223 G; 1638 T; 0 other;
     gtggcgaacg aggtggtgta gttttttttc cgtaattgga aaataattgc gtttcgcgcg        60
     tagttctagt ggtcgaaaaa caaccgggag gaaattaccg tcggtattcc ggagtgattt       120
     ttgtgcggtg gtttgtaccg gcagtttgct gtttttggct caagtttgcc atacagtgcg       180
     ccgtacagtg tttggttttg tttcccacgg attgtagcgc ttgtttgctt gccgtcggag       240
     gaacagctga ctgtgtgttt tgttttgtat cgctgtttaa cgctcaatcg caggtttggt       300
     tgttgcgttc acgtaagtac tgcatgtaaa gttgaaatac aaaagagaaa attctcaaag       360
     tttaaaactg catgcttact gtggaagttt gcgatccatt ttctttcgcc tagcaagcga       420
     gggaaaatag tttcattttg tttgtaatgc tttattctgt ttggcattca aagaaagttt       480
     ttgtcatcag actagtgtgt gtttctgttg atcaatagtt tattgctaca acgttgtttg       540
     cgacattaag tttaacgata catgatcgtt gtcgcgcggt gaagtgtttc atcgcatatg       600
     tttgttgtat gcaaagttgt ttgtgtgtca caacacagtg gtcttaccgc attagttttt       660
     gcgtggaata aagtttttca acaaaataaa caggatcagt tttatgctca aagcgtacaa       720
     aaagtttgtt tcgatctgtt tgttgaagtt tgttttcagt ttatgattta atctgtaata       780
     aaaaaaatca atcgttttca gtttatgatt tacactgtaa aaaaatcaat cgtttgtttt       840
     cggtttatga tttaatctgt aataaaaaaa atcaatcgtt ttcagtttat gatttacact       900
     gtattaaaaa aaaatcaatc gtttgttttc agtttatgat ttaagctgta ataaaaaaaa       960
     tcaatcgttt ggagtttgtt ttagttgaac aaatcatgtc aactacgtcg tctgcaagtt      1020
     ttatcaagcc ttttattcct ggatcagttt catttcacaa gtatttggag gatttgaatc      1080
     gtgagtttat gcatcgagga gtttaccgta aggaaaagca aaaagcttcg tttcttgctt      1140
     catgcgcagc tcaagttttt agtgagttga agcagatttt caaagaacgg agtttgaaag      1200
     acgtttcgtt tggagaaatt acggatgcat tacggaagcg gtttgatgga acagaagcag      1260
     aggcaaagga aagtttaatc catggagttt caacaaatcg cagtttacca agcagtttca      1320
     agcaatcatt ttcgcataat gacaagaata gtttaccttc acattcacgc aagttgtttt      1380
     gtagtttttg tcacagagaa ggacatattc gacgattttg tttcgatcga aagaatgatg      1440
     aggttaagtt tgtcgattct tcagcagttc aatcacaaag tttagatgtt tccaacagtt      1500
     tatcgtgcga gtcagagttt tcgtgcgagg aaacagattg tttaacattt tcagtcaaca      1560
     gaattaatga gccgtgttat cggacagttt acgttgacgg tattcgtttg aaaatggaag      1620
     ttgattgtgg tgctgccgtt tccgtcattg attcatcaat gtacgaggaa gaattcgatc      1680
     atataccgat agaaccatgt gacaagaagc ttgccgtgat aaatggaagt cgtttgaagg      1740
     tttatggtaa aattcaagta ttggttgagt tggacggacg atcagaagtc gttaatctga      1800
     tagttttgcg aagtgagaac aggtttacac ctttgcttgg acgcgattgg ttggatttgt      1860
     ttattccaag ttggcgtagt gtgtttgcaa ctcgtagtat caatcaactg gcagtttctc      1920
     atgaccaaat tctagtggat gttaagcgca agtttgccaa tgttttcgat aaatcattat      1980
     caaccccaat caaaggtttt gaagcggatc tagttttgaa agatcataca ccgatgttta      2040
     gacgtgccta tgacgttccg ttgaggttga aggataaggt cgtggaacac cttgagagtt      2100
     tggaaaagga tggcgtcata accccggtcg atgcgagtga gtgggcatct ccggtgatcg      2160
     tcgtcgtaaa gaagagtggt gatattagga tggttatcga ctgtaaagtc tcgattaaca      2220
     aggtcataat ccctaatacg tatcctctac ctttggcaca agacatgttt gcatctttgg      2280
     ctggcgcgaa ggtgttttgt tcactagatt tggcaggagc gtatacacag cttaagttgt      2340
     ctaaaaagtc gagaaaaata atggtgatta atacgattaa aggtttgttt acgtataatc      2400
     gtttaccaca aggtgcttct tcaagtgcag cgatttttca acgtgtcatg gatcaggttt      2460
     tgaaaggtat tgacggagtt tactgttacc ttgacgatgt tttgatagca gggagagacg      2520
     agaaagactg tttacgaaag ctttatttgg ttttagagcg actttctaat gccaatatta      2580
     aagtcaactt gcaaaaatgc aaatggtttg tgactagttt gccatttctg ggtcatgtgt      2640
     tgacggataa aggtttgttg ccgtgcccag agaaggtgga aacaattcgt agagccagtg      2700
     ttccgaataa tgtttccgag ttgaaggcat tcttgggttt aatcaattac tacggtaaat      2760
     ttattcccaa tctgtcgtct cgccttagtt gtttgtatcg tttgctcagg aaagacgtta      2820
     agtttgtctg gactgctgag tgcactagtg tgtttgaaga ctgtaagctc tcgttgttga      2880
     agtcaaacct gttggagttt tttgatccat gcaagcctgt cgttgttgtg acagatgcta      2940
     gtagttacgg gttaggtgga gtcattgcac atgacataga tggagaagag aggcccatta      3000
     gttttacctc cttcagttta acaaatgcac agaagtccta cccgatactg cacttggaag      3060
     cgttggccgt tgtgagtacc attaaaaagt ttcataagtt tctgtttggt aaaaagttta      3120
     ctgtgtatac tgaccataag ccgttgattg gaatctttgg taaggaagga aagaatagtt      3180
     tgtttgtgac gcgtctgcag agatatgtat tggaactgaa catctacgat tttgacattg      3240
     tttacagacc gtcatcaaaa atgggaaatg cagatttctg ttcgaggttt cctttaccag      3300
     acgaagtacc agttgcacta cagagagagt ttatcaaaag tttgaacgtt tcgagtgagt      3360
     taccattgga ttacgtttta gttgcagaag aaaccaaaca agacgagttt atacagcaga      3420
     ttgtttacta cctgaaacat ggttggccta aaaagttgga gcgaagtttg ttggatgttt      3480
     atgctcatca tcaggatttg gagttggtcg atggatgttt attgtaccaa gatcgtgtgt      3540
     ttatacctgt tagtttacaa aaacagatcc tgaagctgtt gcataagaac cattcaggca      3600
     ttaccaaaat caaacagtta gccagaagaa cagtttactg gtatggcatg aacagcgaca      3660
     ttgaaagttt tgtcaagtcg tgtagtgtat gttgccagat gaatgcagta gcaaagcaag      3720
     ttcctcattc ctcttggata ccaacgaata aaccgttttc gcgtattcac gctgatttct      3780
     tctacttcga cgagaaggtt ttcctggtca ttgttgacag ttttaccaaa tggttggaag      3840
     ttgaatacat gaagtatgga acagatgcca ggaaagtcaa ctcgacgttc atgagtgttt      3900
     tcgctaggtt tgggttacct gatgtaatcg ttacagatgg cggaccaccg ttcaattcga      3960
     aggagtttac ggattttatg gaaagacatg gtgtgaaggt gatgaagagt ccaccgtata      4020
     atccgtcaag caacggtcaa gcggagcgca tggtgcgagt tgtcaaggag agtttgaaga      4080
     agtttttatt ggatccagag ttgagaagta caacaaccga ggacttagtt tcgtattttc      4140
     tgtttggtta tcgtaattcg tgtttggaag aagataacaa gtttccttcg gagaggttgt      4200
     ttagttttaa acctaagacg ctgttggact tgattcatcc tagaaatagt tttaagaatc      4260
     atatgacgaa gcctacaagt gtggaaaatc ctaagcaaga taccaaagac taccgtaagc      4320
     ctgactggac agataagttg tgcccaggag acactgttta ctataaaaat tttagaacaa      4380
     ctgacatcag acgatggctt gaagccaaat tccagaagcg tgtttcctca catacatttc      4440
     aagtttccgt aggaggtcgt gtgtatttgg cacatcgtaa tcagttgaag caggctggaa      4500
     acgacaagag tcggcggtat gtaacttttt cgaggggtaa ggagtatgga cgcagcagaa      4560
     aacgtactag agaggacgac gaagagagcg attctgacga tgctgaagat ttttacggtt      4620
     tcccagcaga ttcttttgtg tttagggata attgtgaaaa tccgttgaat gacagtcgag      4680
     atggttctgg agaagttgtt gcaggttcga tgtcaccaga agagttggat tgtggagttc      4740
     ctgacagagg agtttcgcaa gctgacgagg ttgatccatt ggaaggaccg tcatcgagat      4800
     gttcgtcgag ctcagatcgt caaaaagcaa gtttacgccg ttcgaggcga atcaagcgtt      4860
     tcagaagaga caacgaatat gtttactact gatttcgaat cagagtttgt ttgtttgatt      4920
     gtttgtttgt tttcggtagt atgttttacc gactgtttac agcagtactg ttttgctgtg      4980
     ttcgagaagt atccacgttg ttcccgaaag tattgaaagt gtttagtgtg aatttcagtg      5040
     ttgtgtatag ttcatctaaa agggggagaa c                                     5071
//
ID   Gypsy-266_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-266_AA_;
KW   Gypsy-266_AA-I; Gypsy-266_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 195 BP; 42 A; 51 C; 46 G; 55 T; 1 other;
     tgtggtgacc accctatcga gttatgctgg ctgctggctc agccatagca gaaaggaata        60
     aaacwattca gtttattact gactacgaac gcgcgcgtac cgtttcgtat actcggtcat       120
     atcacacacc gtctattgtg tagtccctat gcgtgcgtgt ctggccggtc tctaccgttt       180
     ggtccggtca taaca                                                        195
//
ID   Gypsy-267_AA-I repbase;    DNA;    INV; 5402 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   13-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-267_AA_;
KW   Gypsy-267_AA-LTR; Gypsy-267_AA-I.
XX
NM   Gypsy-267_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5402
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
RN   [2]
RP   1-5402
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-MAR-2019).
XX
DR   [2] (Consensus)
XX
CC   Positions [2616-3116] - Reverse transcriptase
CC   Positions [4250-4720] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1024..5262
FT                 /product="Gypsy-267_AA-I_1p"
FT                 /translation="MALNGLTTMIEPYRKGSSFCDWVDRLAYCFQANAVSD
FT                 EMKKAHLITLGGTVLYSELKLLYPNGALDTAVYADIVTKLKARLDKIEPDV
FT                 IQRVQFNSRIRQAGETLEDFVLALKLQTEFCGFGDFKNMAIRDRIVAGVND
FT                 KALQQRLLNEEKLTLETAEKIITTWQIAETIAKALGSRESNWDQISSLKMA
FT                 GANAVGTSMRKLARTYELARQGENSRGSVKNRLGYRQWPVRQGVYQRQPTD
FT                 WGKSKSLNTGEWRNPEHKRLSRFANFTCDYCGIKGHIKKRCFKLKNWKRDA
FT                 VNMVEDQQAPAVDEDLHDMINRMTTKDSDTEDDNMDVGESENEEFECMNIT
FT                 SINKINNPCLLELTIEGKLLSMEIDCGSAVTVINKRQYFSLFDKPLQKCNK
FT                 NLAVVNGSKLDVLGEAKVFVSFQGKEAILKLLVLDCCNNLIPLLGRPWLDV
FT                 LFPNWRIFFSNQVINNMVIDNNEVLISDLKQQFSKVFVKDFSTPIVGFQAD
FT                 LVLKTEQPIFKKAYDVPYRLKDKVDDYLNRLEREKVITPIQTSQWASPVIV
FT                 VIKKNNQIRLVIDCKVSINKMIIPNTYPLPTAQDLFAKLAGCKLFCALDLE
FT                 GAYTQLELTDRSKKFMVINTTRGLYTYNPLPQGASSSAAIFQQIMDQILHG
FT                 IDGVYVYLDDVLIAGKNFEDCLSKLRIVLAKLSKANIKVNLDKCRFFVKEL
FT                 DYLGHVISEEGLKPCPDKISTIKNANVPRNVSELKSFLGLINYYQKFIPHL
FT                 STKLFHLYNLLKKDVKFVWNSNCSKAFEDSKNALLATDLLEFYDPNKPLVI
FT                 VSDASGYGLGGVIAHVIDGTEKPISFTSFSLDKCQKSYPILHLEALALVCT
FT                 IKKFHKYLYGKKFXVFTDHKPLVGIFGKEGRNSIFVTRIQRYVLELSIYDF
FT                 EIRYRPSSKMGNADFCSRFPLPQSIPNELHTDFVKSLNFSKNVPLDHEKIA
FT                 NATKNDEFMCKVISFMKHGWPDRLNKHFTNVFANQHELEIVDECLLYQDRV
FT                 VIPAVLQPHVLNLLHGNHAGIVKMKRLARQSVYWFGINSQIEEFVKKCDVC
FT                 NSMATISKQKIDSEWIPTTRPFSRVHVDFFHFSSHTFLLIVDSYSKWVEVE
FT                 WMKTGTECGKVLKKLVAFFARFGLPDVLVSDGGPPFNSFAFTLFLENQGIK
FT                 VLKSPPYHPASNGQAERFVRTVKDVLKKFLLEPEHCELELEDQINLFLINY
FT                 RNNSLTADGHFPSERVFAYPPKTLIDLLNPKKHYRKFLLKPAKTSNEDNLL
FT                 EVVSRTKRKNPLDDLMEGDVIWYQNHKPNHPAKWLKATYLKQISQNLFQVL
FT                 IGNVVATVHREQIRTSGGSDREMRPNVVLTKQRAIDVTDGPGNCVSERLSD
FT                 DVNKNRSDKYYQEEKFSGKRKKPADWVDEPPRRSKRNRKEKRDDAFVYIK"
XX
SQ   Sequence 5402 BP; 1735 A; 902 C; 1158 G; 1605 T; 2 other;
     agttgacgac gaggcaaccg gacatcaata caccgtagcc gtaagtaaat gctgtcagtt        60
     gtgaggcagc tcagttgaat tgtagacggc ttggtgaacg gtgcgaaacg cgtgcaatcg       120
     gcaaaacctc cttttaaccg gcgattggtg agcgtccgga cggaaagttt acggaagtta       180
     ttttttattc tcaaaagaaa attcgaccgc ggttcttttc gggtatttca aagtaagtaa       240
     atttacaaat ctaccttcag agaagaaata agcagtaatc atcgagttat ttgacctaat       300
     tttctgggtt ggtgttggcg gtgaaatgmt gtttaagatc atattataat cgaccatttt       360
     gtttctgagc gtcagttgat tgttctataa ataataaatg atcttattgt gttggaagat       420
     ctttttgtag tggtgaattc tatgctacga cgtgcagttg aagatatgtt tgatgagttt       480
     tattaagagt gcctcttttc acatattcat ctagttgagc tggtttggaa ataaaagcat       540
     cagtgagcat ccatcaagct acggagggca cacagcccca cgcaaattca gtagtgaaaa       600
     tacgacatca ggatcggtct ttgtgattgt agcgccaagg agggttcaac gtagttgagt       660
     ttaccagctt tggttggccc agcatctttt cgaacgagat aatcagaagg atcgtttaac       720
     cagtatcaac atcaaggcca ttgaccttag ttggttcatc gaccggttgg aacgcaagtg       780
     agtgagcagt aaattggtga gtcaatttga aatcttttta ttacgagatc aacggattct       840
     tactgagatt ttgttttcat gatcttcatt attcttggcc accgaaacta ttattgaaaa       900
     acgacaaacg cctataattt ggcatattgt tacagtgttt taccaattgt gcaatttact       960
     ccattttggt gccttttgtt agtattcttt tatttgaatt ttagattgtt attctttcta      1020
     acaatggcgt taaatggatt gactactatg attgagccat acagaaaagg ctcttccttt      1080
     tgtgattggg tagaccggct tgcctattgc tttcaagcca acgcagtttc cgacgaaatg      1140
     aaaaaagctc atttgataac attaggggga acagttttgt attccgaact taaattatta      1200
     tatcctaatg gggctttaga taccgctgtg tatgcggaca ttgtaaccaa attgaaagcc      1260
     aggcttgaca aaattgaacc tgatgtgata cagcgtgtcc aatttaattc ccgaattagg      1320
     caagctggtg aaactctgga agattttgtt ttagccctga agcttcagac tgagttttgc      1380
     ggcttcggcg atttcaaaaa tatggcaata agagatcgca tcgtagctgg cgttaacgac      1440
     aaagccctcc aacaaaggct tctaaacgaa gaaaagctga cgttggagac ggctgagaaa      1500
     attataacga catggcaaat tgccgaaact atcgctaaag ctttgggaag tcgggaaagc      1560
     aattgggatc aaatatcctc tttgaaaatg gcaggtgcca atgcagttgg aacttctatg      1620
     aggaaacttg ctagaacata tgagctggca aggcaaggtg aaaattccag aggttctgta      1680
     aagaatcgat taggatatag acaatggcca gtacgtcaag gggtctacca aagacaacca      1740
     actgattggg gtaaatcgaa gtcattgaac acaggcgaat ggcggaatcc agaacataaa      1800
     agactatcgc gctttgctaa cttcacatgt gactactgtg gaattaaggg tcatattaaa      1860
     aaacgatgct ttaaattgaa gaactggaag agagatgctg tgaacatggt ggaggatcag      1920
     caagctccgg cagtggatga ggatttgcat gacatgatca ataggatgac caccaaggac      1980
     tcggataccg aagacgacaa catggacgta ggtgagagcg agaatgaaga atttgaatgc      2040
     atgaatatta cttctattaa caaaatcaat aacccttgtt tgttggagct gactattgaa      2100
     ggcaaattac ttagtatgga aatcgattgt gggtcggcgg tgactgtaat aaataaacga      2160
     caatactttt cattgtttga caaacctttg cagaagtgca ataaaaattt ggctgttgtt      2220
     aatgggtcca aactagacgt gcttggtgaa gcgaaagttt ttgtcagttt tcaaggaaag      2280
     gaagcaattt tgaaactttt agtgctagat tgttgcaata atttaattcc attattgggt      2340
     cgaccttggc tggacgtttt gttccctaac tggcggattt ttttttctaa tcaagtgatc      2400
     aacaacatgg tcattgacaa taatgaggtg ttgattagtg acttgaaaca acagttttct      2460
     aaagtttttg ttaaggattt ttcgacacct attgtaggct ttcaagctga tctagtattg      2520
     aaaacggaac aaccaatttt taaaaaagcc tacgatgtac catacagatt aaaagacaag      2580
     gttgatgatt acttaaatag actagaaagg gagaaggtta taacaccaat acaaactagt      2640
     caatgggctt ctccggttat cgtggtaatt aaaaagaaca accaaataag acttgtaata      2700
     gattgcaaag tttcaataaa taagatgata ataccgaata cttacccttt accaactgca      2760
     caagatttgt ttgcaaaatt agcaggatgt aaattgtttt gcgctcttga ccttgaaggt      2820
     gcatacactc aattagaatt aacagatcgt tccaaaaaat ttatggtcat taatacaaca      2880
     agaggtttat atacttacaa tccactacct caaggagctt catcaagcgc tgccatattt      2940
     cagcaaataa tggatcaaat attacatggt attgacgggg tttatgttta tctagatgac      3000
     gtactgattg cgggaaaaaa ctttgaagac tgtctttcta aattgcggat agttttagcg      3060
     aagttgtcaa aggcaaatat taaagtaaat ttagacaaat gcagattttt tgttaaagag      3120
     ttggactatc ttggtcatgt tattagcgaa gaaggtttaa aaccatgtcc cgacaagatt      3180
     tctacaataa aaaacgcaaa cgtgccaaga aatgtaagtg aattgaaatc ttttttgggt      3240
     ttgattaatt attaccaaaa gttcattcct cacctctcta caaagctgtt tcacttgtat      3300
     aatctattga agaaggatgt aaaatttgtt tggaatagca attgcagtaa agcgtttgag      3360
     gattctaaaa atgcactttt ggcaacagat ctgcttgaat tttatgaccc aaataaacca      3420
     cttgttatag tctctgatgc atcagggtat ggactagggg gtgtcattgc ccatgtaata      3480
     gatggaacag aaaagccaat tagttttacc tcgttttctc ttgataaatg tcaaaaatct      3540
     taccccattt tgcatctgga agctcttgca ttggtctgta ccattaaaaa atttcacaaa      3600
     tacctctatg ggaaaaagtt tttmgttttt acagatcata aaccattggt aggaatattt      3660
     ggtaaagagg gacgaaattc aatatttgtc acaagaatac aaagatatgt tttggagctg      3720
     tccatatacg actttgagat ccgctataga ccttcgtcta aaatgggaaa cgcagatttt      3780
     tgctcccgtt ttcctttgcc tcagtcaata ccaaatgaat tacatacgga ttttgtaaag      3840
     agtttaaact tcagtaaaaa cgtaccgctg gaccatgaaa aaattgcaaa tgctaccaaa      3900
     aatgatgaat ttatgtgtaa agttatttct ttcatgaaac atggttggcc tgatagattg      3960
     aacaaacatt tcacaaacgt ttttgcgaat caacatgaat tggagatagt agatgaatgt      4020
     ttattgtatc aggatcgcgt ggtcatccca gcggtattac aaccgcatgt tctgaatctc      4080
     ttacatggta accacgcagg aattgtaaaa atgaaaaggt tagcaaggca gtccgtttat      4140
     tggtttggca taaactcgca gatagaggaa tttgtgaaga aatgtgatgt gtgtaacagt      4200
     atggcaacca tttcgaaaca gaaaattgat tcggaatgga ttcccacaac aaggcctttt      4260
     agcagagttc atgtggactt tttccatttt tcaagccaca cgtttctatt gattgttgac      4320
     agttactcaa agtgggtgga agtagaatgg atgaaaactg gcactgagtg tggaaaagtc      4380
     ctcaaaaaat tagttgcatt ttttgccagg tttggtcttc cggatgtgtt agtttcagac      4440
     ggaggtcctc cattcaattc ttttgctttc acacttttct tggaaaacca agggattaag      4500
     gtgctaaaaa gccctccata ccatccagca agcaacggtc aggcggagcg gtttgtgaga      4560
     acggtgaagg acgttttaaa aaagttctta ttagaacctg agcattgcga acttgaattg      4620
     gaggaccaga ttaacttatt tttaatcaat tataggaata attcattgac ggctgatggg      4680
     catttcccat ccgaaagagt gtttgcttat ccacctaaaa cattgatcga cttgctgaat      4740
     ccaaaaaaac attataggaa gtttttacta aaaccagcta aaacctctaa tgaggataat      4800
     ctactggagg tcgtttccag gacgaaacga aaaaatcctc tagatgatct gatggagggt      4860
     gacgtgatct ggtatcagaa tcataaaccc aatcatccag caaaatggtt gaaagcaact      4920
     tacctaaagc aaatctctca aaacttattc caggttctaa ttggaaacgt tgtggccacg      4980
     gtacacagag aacagattag gacgtcagga ggttcagaca gagagatgcg tccaaacgtg      5040
     gtgttaacaa agcagagggc gatcgatgta accgatgggc caggcaattg tgtttccgag      5100
     agattaagtg atgatgtgaa taaaaaccgt agtgataaat attaccaaga agaaaagttt      5160
     tctggtaaaa ggaaaaaacc tgccgactgg gtggatgaac cacctcggcg ttctaaaaga      5220
     aaccggaaag aaaagcgaga tgatgcattt gtatatatta agtaaatgta gctttcatta      5280
     agttctcaag gaatatattc ctatcatgtc taaaatcttt ctgaaattaa gttccaatcg      5340
     atagttagat tttgtcagat caattcgaat taatgtatca aacatccaaa aggtggagga      5400
     gt                                                                     5402
//
ID   Gypsy-267_AA-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 16.02, Created)
DT   13-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-267_AA_;
KW   Gypsy-267_AA-LTR; Gypsy-267_AA-I.
XX
NM   Gypsy-267_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-296
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (13-JAN-2011).
XX
RN   [2]
RP   1-296
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-MAR-2019).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 296 BP; 87 A; 59 C; 50 G; 100 T; 0 other;
     tgttgtgttc tgattttcaa caactagttt agatcagtgt agctttgcca taaattacat        60
     ttaccactac aatctgaatt tattaatgat ggaatgataa cgccctgtaa cggatatggt       120
     aatcatataa aagattaaag aaaccatcgg agaagcctct tttggttatc aactatcaac       180
     gtattagctc gtgtttaaat tattactctg aaggaaagtc atctctaaag gattcatctc       240
     cgtttcactt cgctgatcca tttcgtccct ggattgtccc ccggctggat atcaca           296
//
ID   Gypsy-268_AA-I repbase;    DNA;    INV; 2558 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-268_AA_;
KW   Gypsy-268_AA-LTR; Gypsy-268_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2558
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2638-2638 (2012).
XX
DR   [2] (Consensus)
XX
CC   'CAATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           623..2248
FT                 /product="Gypsy-268_AA-I_1p"
FT                 /translation="MPSFGTLDHYVKGSSFTNYMERLEHLSSFNGWTEANK
FT                 KSVLIALTGPVVYDELKLIFPTVELATLNYADMVKKLKERFDKVDPDMMQR
FT                 FHFYNRFQKVDESAESFILSVKLQAELCNFQQFKETAIRDRLIMGMLDKEL
FT                 QKSLLMSEELTLAVIEKRLLSSEVANRQTKAMTGDSKTEQVNSVKSRLGDK
FT                 IGESSREYRSRYDNNYSSRNFNRNDRRVSFRARSPSGNRNRRSYANAICDY
FT                 CKKKGHIRRDCYSYQNRYSVRFVKENGDKDTSYDFKRSAGRESSGEETDGM
FT                 ECLMISAVKKINEPCMITAKVQNRSLKMEIDSGSAVSVISQVDCKKMFSSV
FT                 PMIRTSRQLVVVDGARLRILGEILVQVELNGLVDKQKLVVLECNNSFVPLI
FT                 GRSWLDRFFTGWRSGFTKAALVNNLVQDKDFSEPIAGYEGDLALKNDQPIF
FT                 KKAYTVPYKLKEKMEKHLDMLEQQKVITPIKASEWASPVIVVVKKDQDIRM
FT                 DNHHGSQKSVEASLFSTPEFNTSASRGPAKKAQSLGTRQNGISGLF"
XX
SQ   Sequence 2558 BP; 844 A; 407 C; 591 G; 713 T; 3 other;
     actggcgacg aaggtaaatt ggattaaata tcatcaaacg gaatatttct tgtagcaaag        60
     aaaattctag tgtgatttgt gtaaagtttg cagagtgaca cttgagaaaa cttgagcata       120
     gatggtgtgt tagtgataaa gcaataattt tgaattacag gcaccattga aatacgattt       180
     ttattcgaac aattacaaaa atatatataa caaattatag catattctat tggtgaaatt       240
     caaaggnatc aagtgatttt ttnttctttt gtttaacgtg cagtggccat cttttgttct       300
     ttctaccgtt gcaattatag tgaccgccat agatttttct gctgtggaac aaagtacaca       360
     attgcctttt gtnaggatat ccaagaatcg gtcattttct tgctgatcat cagacgtgag       420
     ctacaatcag tgagacgaaa tcagcggaag agaactcatc gtgagtagtg agttatcagt       480
     gagcggtgag aaaggctatc ggctgtgtct cgtcattcca tcatcactca aaggtcaaac       540
     acgactgcgt gagtgcatct gcatctgcat caaccgtaag tgtccgtttg atttactgta       600
     atagtatata tcatcaaaaa taatgccatc ttttggaaca ttggatcact atgtgaaagg       660
     gtcatctttc actaattaca tggaacgact agaacatctt agttcgttca atggttggac       720
     agaagcaaat aaaaaatctg tcttaattgc gcttactggt ccagtggtgt atgatgagct       780
     taagctcatt ttccctactg tagagttagc aacacttaat tatgctgata tggtgaagaa       840
     attaaaagaa cggtttgata aagtggaccc tgacatgatg cagcggtttc acttctataa       900
     caggttccag aaagttgatg agtctgctga gagttttatt ttatcagtaa agctacaggc       960
     agagctttgt aatttccaac agtttaaaga aacagccatt agagatcgct taattatggg      1020
     aatgcttgac aaggaacttc aaaaatcatt actcatgtct gaggaattga cactagctgt      1080
     gattgaaaaa agattattga gcagtgaggt ggctaacaga cagacaaagg cgatgactgg      1140
     tgactcaaaa acagagcaag tgaattccgt taaaagtaga ttgggtgata agatcggtga      1200
     gagtagtcgt gagtaccgca gtcgttatga taataactac agtagcagaa attttaacag      1260
     aaacgacaga cgcgttagtt ttcgagctag atcaccatcc ggtaacagga atcgccgatc      1320
     atacgcaaat gcaatatgcg actattgtaa aaagaagggt catatcagac gtgattgcta      1380
     tagttatcag aatcgatatt cagtgcgttt cgtgaaagag aatggagaca aggacactag      1440
     ttatgatttc aaacggtcag caggtcgtga aagctcaggt gaagaaactg atggtatgga      1500
     gtgtttgatg atatcggcag tgaaaaagat caatgaacca tgtatgataa cagcaaaagt      1560
     gcaaaatcga tcgttgaaaa tggaaataga ttcaggttca gctgtgtcgg ttattagtca      1620
     ggttgactgc aaaaaaatgt tcagtagcgt tccaatgatt cgcactagta ggcagttggt      1680
     ggttgtcgat ggtgctcgtc tgcgaatact tggtgagatt ttggttcaag ttgagttgaa      1740
     tggcctcgtg gataagcaaa agttagttgt tttggagtgc aacaacagtt ttgtcccact      1800
     gataggaagg tcatggcttg atcgtttctt tacgggttgg aggtctggtt ttacaaaagc      1860
     ggcgttggta aataatcttg ttcaggataa agacttttca gaaccaattg ctggatatga      1920
     aggggacctg gcgttgaaaa acgatcaacc aatttttaag aaggcataca ctgtaccgta      1980
     caaactgaag gaaaaaatgg agaaacactt ggatatgctc gagcaacaga aagttattac      2040
     acctattaag gctagcgagt gggcgtcgcc tgtgatagtg gtagtgaaga aggatcagga      2100
     tatccgaatg gacaaccatc atggctcaca gaagtcagtt gaagcttccc tattctcaac      2160
     accagaattc aacactagtg cttccagagg tccagcgaag aaagcgcagt cactaggaac      2220
     cagacagaat ggaatttcag ggctgttctg agtctgatga agaaccattt ctagggtttc      2280
     ccgatgaaac tgagggacat acttccagca attcgaagcg gcagaaattg aacgacggaa      2340
     tgattatgac taggagccga actagaatcc agaacactaa atcgcatgat gtgaagtgaa      2400
     gtagtggaca ttaaagaaat atttgcatga agtgctttcg gaaatagtta gtaagtaaaa      2460
     aaaaaaaaga aatagttcat gtacttaaaa agaacattca gaaatcattt taaaagctaa      2520
     tattaatttt aagaataatc ttttaaagaa gggaggac                              2558
//
ID   Gypsy-268_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-268_AA_;
KW   Gypsy-268_AA-I; Gypsy-268_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2639-2639 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 242 BP; 86 A; 32 C; 48 G; 76 T; 0 other;
     tgttgcgtcc acgcattcga acattcgaaa ggtgtaacgt gttcggtgtt aaatacaaac        60
     ccttcgtaaa tcatggttcg tttcaactga gtgaattgag tgaatattga gatctcgagt       120
     aataaaataa gatcagattg atctgtgact ccaaagtgaa aagtcgagtt tttaaagtta       180
     ttggaaaatc cgaaacagtg aattagaaat ttatatttga gtaataataa ctgaatttaa       240
     ca                                                                      242
//
ID   Gypsy-269_AA-I repbase;    DNA;    INV; 4353 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-269_AA_;
KW   Gypsy-269_AA-LTR; Gypsy-269_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4353
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2640-2640 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3321-3782] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1488..4070
FT                 /product="Gypsy-269_AA-I_1p"
FT                 /translation="MLKFLTNALGHCTKTKVKLFLKPEAKPVFCSKRPVPF
FT                 NTVPLVDAELTRLQNLGIITPVDFSEWAAPIVAVRKPNGRVRICADYSTGL
FT                 NDSLEANHYPLPTPEEIFAQLNGSTVFSIIDLSDAYLQVEVDDDSKKLLTI
FT                 NTHRGLFRFNRLAPGVKSAPGAFQRLIDGMIADIPGIRSFIDDLIIFGKDW
FT                 KSHNASLNKLLSRLQEYGFHIKLEKCRFYQTEIGYLGHIVDPRGIRPDPEK
FT                 LKAIASIPPPTNISELRSFLGAINFYGRFVRNMHNLRHPMDKLLKQGVKWE
FT                 WNSECQQSFDEFKKILQSKLLLTHYDPKLPMIVAADASSTGIGAVIFHEFP
FT                 NDSLKAIQHASRSLTPAERNYGQPEKEALALVYAVTKFHKYLLGRRFKLLT
FT                 DHKPLLSIFGSKKGIPLHTANRLQRWALTLLNYDFQIQHVATNDFGCADML
FT                 SRLIDRNIRTEEEYVVAAVTLEEDMTSILADNVDKVPVSFGALQKATRSSK
FT                 TLQLVTKYIREGWPNNQTSITDPEALPYYHRRESLSLVNDCVMFHDRVVVP
FT                 DRFRRQIMKQFHRGHPGIVRMKAIARSFIYWPGIDKDIEDFVKRCSPCSTA
FT                 GKSPTKTTLESWPVPSKPWSRIHLDYAGPVDGMYFLVVVDPYTKWPEVFAT
FT                 RTMTSKTTIKLLKQMFSTFGVPVTLVSDNGTQFTSHEFRTFCESLGINHIR
FT                 TAPYHPQSNGLAERFVDTLKRSLRKIRSGGETLEEALQVFLQVYRTTPSSD
FT                 LGGKSPAEMMFQRPIRTVFSLLQPPTEVPSTSCDKAEKQNTVFNKKHGAVK
FT                 RQFATAEQVYAQVHQNNTWNWEKATIVERIGKVNYNVYLEDRQRLIRSHAN
FT                 QLKQRVPE"
XX
SQ   Sequence 4353 BP; 1256 A; 1080 C; 996 G; 1007 T; 14 other;
     gttggcgacg agtttttcct ggacgttacg ttttcaagcg atccagatca cgaatccatc        60
     cggaagaatg cctgcgagtt caaccccggc gggaggaagc agcggtggng gcaacggang       120
     aaacnagctg caagaagcca ttctgcaaat caccagactt ctgacgcggt tggccgttcc       180
     agcaccaccg aacaccgagc agaccctaga agcgctatcg accaacatca gtgaattcac       240
     cttcgatccg gacaacggga ttacttttga gaagtggttt tcccgataca cggagctatt       300
     cgagagtgat gccaggaatt tggacgatgc agccaaagtt cggttactcc tnaggaagct       360
     ggataccgca tctcatagcc gatacgtgaa ttacattctt ccgaagttac ccaaggatct       420
     tcagttcacc gaaaccatct caacactcaa gaagattttc ggtacgcagt catcaatttt       480
     ccaccgacgt ttccagtgtc tgcagcnagt caagtcggaa ggcgacgaca taatcagcta       540
     tggcggcatg gtgaacagag ctgtggaaga attcgagttc cggaattgca agatcgacca       600
     tttcaagtgt ttagtgttcg tctgcggact caaagctcct cgatatgcag acatccgagc       660
     ccgactccta gcacgcatcg aaggcgaaac ggcagaacac ccggtaacac tccagacgct       720
     catcgacgag tttcaacgcc tcgtaaactt gaaagcggac acatcaatga tcgagcagca       780
     atcaagcttg aagtcatctg ttcgcgcagt ctcggagaag aaacccggta agntttccca       840
     gcattcgatg aagacgggat cgaagacacc ccgtactccc tgttggcaat gcggacanat       900
     gcattttgtt cgtgactgtc cgttttctac acatcaatgc aagacgtgca atcgaactgg       960
     ccataaggag ggctactgcg gctgtattaa gaaaacttca gacagttcat ctcaagacaa      1020
     acgttacaag ggaaagaaga agaacagatc agccacacag acccgaagcg tattcatngt      1080
     gaatcaaatc gcnaatcaga gcaggaagcg gaaatttgtg acgacatcaa tcaacggagt      1140
     tgcagtttca cttcagttgg attccgcgag cgacatcaca gtggtttccg aatcaacctg      1200
     gaaattgctg aagaagccag aagcaaaact accctcaata gaagctgtca atgcgtccgg      1260
     cgagccatta ggtctgatcg gagaattcca gtgtgatgcg gctatcaacg gcgttgngaa      1320
     gcaagcaaga tgttttgtga cgtctgttcc tgatctcaat gttctgggca tagaatggat      1380
     cgacctgttc aacctgtggt caataccgtt caacgcaatc tgcaaccaca ttggatctgg      1440
     agacaagcca tcaaccaaca atgcacttna tcaactccaa gctaagcatg ctcaagtttt      1500
     tgacgaatgc gttgggtcac tgcacgaaga caaaagtgaa gctgtttctg aagcctgaag      1560
     ctaagcccgt attttgttcc aagcgaccgg tccctttcaa cacggttcca ctcgttgacg      1620
     ccgaactaac ccgtctgcag aatcttggaa tcatcacacc agtagacttc tcagagtggg      1680
     cagcgccaat tgtagcagtt cgcaagccga atggacgagt acggatttgt gcagattatt      1740
     cgacaggatt gaacgattcc ctggaagcca atcactatcc actaccaacg ccggaggaga      1800
     tttttgcgca actcaacgga agcactgtnt tcagcatcat cgacttgtcg gatgcctatc      1860
     tgcaagtaga agtggacgat gactccaaaa agctcctcac tatcaacacc cacagaggat      1920
     tgttccggtt caacagactc gctccaggag tgaaatcggc accaggagcg ttccagcgtt      1980
     tgatagatgg catgatagca gatattccgg ggattcgttc gttcatcgat gatttgatca      2040
     ttttcggaaa agactggaag tcacacaacg cttcactcaa caagctactc agtcgtttgc      2100
     aagaatacgg attccacatc aagctggaga agtgcagatt ctaccaaacg gaaattggat      2160
     atctaggaca tattgtcgac cctcgaggta tacgtccgga tcccgagaaa ctgaaggcca      2220
     ttgcatcaat tccacccccg accaacattt ccgagcttcg atctttcctt ggagcaatca      2280
     atttctatgg aagatttgtt cgcaacatgc acaatctgcg acatcctatg gacaagctgc      2340
     tgaaacaagg tgtcaagtgg gagtggaact ctgaatgtca acagtctttc gatgaattca      2400
     agaaaattct tcaatccaag ctgctattaa ctcactatga ccccaagcta ccgatgattg      2460
     ttgcagccga cgcatcaagc acaggtatag gcgcagttat atttcatgag ttcccgaatg      2520
     acagtttgaa ggcaattcaa catgcatcgc gctcactcac accagccgaa aggaattatg      2580
     gtcaaccgga gaaggaggca cttgctctgg tgtatgcggt tacgaaattc cacaagtact      2640
     tgctgggacg acgtttcaag ctattgacgg accataagcc cttactatcg atttttggat      2700
     ccaaaaaggg cattccactt cacaccgcaa accggctaca gcgatgggcg ctgactcttc      2760
     tgaactacga tttccagatc cagcatgtgg ctaccaacga ctttggctgt gcagatatgt      2820
     tgtcaaggct catcgatcgc aacattcgca cagaagagga gtatgtagtt gctgcagtta      2880
     ctctcgaaga agacatgaca agcattctgg cggacaatgt ggacaaggta ccagtatcat      2940
     tcggcgctct tcaaaaagct accaggtcaa gcaaaacgtt gcagctggtc acgaagtaca      3000
     tacgcgaagg atggccaaac aatcaaactt caatcaccga tccagaagcc cttccctact      3060
     accacaggcg tgagtcnctt agtctagtca acgactgcgt gatgttccac gacagagtag      3120
     tggtacctga caggtttcga cggcagatca tgaagcaatt tcaccgtggt catccaggga      3180
     tagtccgaat gaaggcaatc gctcgaagtt tcatctattg gcccggaatc gacaaggaca      3240
     tagaagattt tgtcaagcga tgttcaccat gttctaccgc gggaaaaagt ccaaccaaga      3300
     cgactctcga atcgtggcca gttccatcga agccttggtc acgcatccat ctggattatg      3360
     caggtcctgt cgacggtatg tattttctcg tggttgtcga tccgtataca aaatggccag      3420
     aagtgtttgc gactcggaca atgacctcca aaacaacaat caagctcctc aaacagatgt      3480
     tttcaacatt cggtgttccg gtaaccctcg tatctgacaa cggaactcaa tttaccagcc      3540
     atgaattccg gacattctgt gagagcctcg gcatcaacca cattcgtaca gccccttacc      3600
     atcctcaatc aaatggactg gcagagcgat ttgtggatac cctaaagcga agcttacgaa      3660
     aaattcgttc gggaggagag actttggaag aagctttgca agtttttctc caagtatatc      3720
     gcaccactcc atcaagcgac ttaggtggaa aatctcctgc cgaaatgatg ttccagaggc      3780
     caattcgaac tgttttctca ctgctgcaac caccaacaga agttccatca acatcctgtg      3840
     acaaagcaga gaagcaaaat acagttttta ataagaagca tggtgctgta aaacgacagt      3900
     ttgcaacagc agagcaagta tacgcgcaag tgcatcaaaa caacacgtgg aactgggaga      3960
     aggctaccat cgtagagcga atcggaaaag taaactataa cgtgtaccta gaagaccgtc      4020
     aacgcctaat ccgttcccat gcgaatcaat tgaaacaacg tgttcctgaa aanatttcac      4080
     atcaagatcc atcacctcta tcagtattct tcgacggatt tggactctcc agttctgaat      4140
     ttacaaggcg cattatgaac gctgatgacg acgaacccga gatacctgct ttgaatgaaa      4200
     atccaaatga atctgacgac tctttttatt ccgaagcatc cgaagaagaa gtaccagctc      4260
     ctccagttgt ggatcccgtt cctgacagag ctagacgtat gatacggctg ccttcaaggt      4320
     tccgatccta cttgatggat taaagggggg aga                                   4353
//
ID   Gypsy-269_AA-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-269_AA_;
KW   Gypsy-269_AA-I; Gypsy-269_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2641-2641 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 208 BP; 60 A; 46 C; 41 G; 61 T; 0 other;
     tgttggatca tagcaactca gatgttggag caaccgagct acttagcaac ctagcaacca        60
     actaggcggt tgcttattta ggccattcaa taagtgaaaa ggctcattcc tagtcacgca       120
     cctgaagaga ataaacgctt aatttgttac ctctaaaagt tcttgttccc ttattcatat       180
     tgtgtcacca cggttgtggg acatatca                                          208
//
ID   Gypsy-26_AA-I repbase;    DNA;    INV; 5003 BP.
XX
AC   supercont1.85;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_AA_;
KW   Gypsy-26_AA-LTR; Gypsy-26_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5003
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.85; Positions 1518352 1513350.
XX
CC   'CTGTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           774..2630
FT                 /product="Gypsy-26_AA-I_2p"
FT                 /translation="MQDSRPVPAFRCDQIESGKLAKEWKIWKTALECYFAA
FT                 YDVTDQYAKRAKLLHLGGPALQVVFNNLKDHDHVPLVTLEPRWYDSAVEKL
FT                 DEFFEPRHQNTSERRKLRLLKQKQGERFADFVIRLKQQVSQCGFEKYGTEV
FT                 SHILSDIYMIDAVVEGCSSNEVRRRVLLMDLSFPEIEALGIAQESVDQQIA
FT                 EMAIGQPPEKVFRIEQQGRFRGKSTGRTAKPTEKSCFNCGRLGHFAASPVC
FT                 SARGKQCRNCKCYGHFEKLCRKAKRSAVKDTDKLIRVVEETPQQETLKMEP
FT                 EKHEAKVYYAFYSGNESNVITCMIGGVSLEMLVDSGADANLVSGEMWEKLK
FT                 NENVAVFSSTKGSSRILRAYGSQDPLMILGSFVADIEVGDQHSRAEFFVVH
FT                 GGQRCLLGDKTAKQLGVLKVGLDINSVAVSPFSKMNGIKAKIQFDPAVVPV
FT                 YQPMRRIPVPLEEAVDRKLDEMLNRDIIEVKTGPTTWVSPLVVVGKSNGEP
FT                 RLCLDLRRVNEAVLREHHPMPSVDDYLAKLGRGQLWSKLDIKEAFLQIELD
FT                 EDSRDATTFITRRDLYRFKRLPFGLVTAPELFQKAMDETLSGCEGTVWYLD
FT                 DVLVEGRDLQEHDQRLEQVKL"
FT   CDS           2857..4860
FT                 /product="Gypsy-26_AA-I_1p"
FT                 /translation="MPAKSKIQAIQSFREPQCEAEVRSFLGLANYLNKFVP
FT                 MLATLDEPLRRLLHKDTRFEWTQEQSKSFNAIKEAMGRIQNLGFYRVEDRT
FT                 AVITDASPYGLGAMLIQFDEADRHRAIGFASKALTDTERRYCQTEKEALAI
FT                 VWGVERFQYYLLGKSFDIFTDCKALSFLFSKRSKPCSRIERWVLRLQAFDY
FT                 RIVFMSGKHNVADALSRLPVQEATPFDPSEEIFVREVATHAASSSALRWSD
FT                 IKEGSQSDQEIQEVLELLVSGETQKLPITYRVIASELCELEGVLLRGDRIV
FT                 VPVSLRNRVLVTAHEGHPGITMMKNHLRSNVWWPKMDAHVEQFVKNCRGCT
FT                 LVGAPEPPEPLLRSQLPSSPWHTIALDFLGPLPEGQHLLVVIDCYSRFIEV
FT                 CEMDTTTTSDVIRELSIMFSRYGIPLSMKADNAPQLSGECAELKEFCDANG
FT                 VKLLNTIPYWPQSNGEVERQNRSILKRLRIAQELGRDWRQELYLYLLTYHS
FT                 TKHPTTGKSPGEIMFGRRIKSKLPTVSSFQEDAGVRERDLVIKEKGKLYAD
FT                 KRRGAMESSIQEGDHVLVKRMRKSNKLDADFSNEEFIVRRKTGTDTVIQSK
FT                 ETGKQYRRTSAHLKKIRDRSDSSSCEGQHSKPLMDVDTSPAKDEEPVDSFP
FT                 ALAKRSRQPPMKHRDYVPH"
XX
SQ   Sequence 5003 BP; 1462 A; 983 C; 1306 G; 1252 T; 0 other;
     atctggcgac gaagattttg gatcgtaaat tgaaaagcgt ggaaaatgta agtataaatg        60
     gcggaaaaaa actggttgat atgaaaaatg gagataaatg aggataatta acgaccggga       120
     aataataatg agtttgcgaa agatggaaat aattgtgcac taagtggggt tggcggaaaa       180
     ttgaggttat gcatggcgtg ggttggaaaa agtgaaaatg tgcatttacg cgaggattga       240
     ttgaattctc cagattgtag ggtttgtggc ggaagcttgt gtcccccgga agaagcagaa       300
     atcgtgagga tttctctaga gcaggcggaa aatgtaaagt tcccctgtat acaaagcaga       360
     gacgcgagga ttgttcgaat tctccagatg gaagcaatta attgtggcgg aagcaatgtg       420
     ggtttccctg gaagtggcag aaatcattag gatttctccg gtgcaggcgg aaaatgagaa       480
     gttcccctga aaaaaaagcg aggattagtt gaatcctccg gaataattcg tggcagaaat       540
     caaacatgga gtcgacggaa attgagtttc tccgaaacgg cgaaggttcg aattggaatt       600
     ttggagaaat attggctgct gtgtggaagc tagtgtggaa gtgctactca atttctagcg       660
     ttgtgtacat atacaaacaa attattggac actgaaaaaa aaatactttt agttttctag       720
     ttcatttaac aagaaaatta aaacgatatt tttctttaaa tcttgctttc cagatgcaag       780
     actcacgacc agttccagca ttccggtgcg accagatcga atctggtaag cttgccaagg       840
     agtggaagat ttggaagaca gcgctagaat gttattttgc ggcgtacgac gttaccgacc       900
     agtacgccaa aagagctaaa ctgttgcatt tgggcggtcc ggcactgcag gtcgtgttca       960
     acaatttgaa ggatcatgac catgtcccat tggtaacttt ggagccaagg tggtatgatt      1020
     ctgctgtaga gaagctggac gagtttttcg aacctcgtca tcagaataca tcggaacggc      1080
     ggaagcttcg cctactgaag caaaagcaag gggaacgctt cgcggatttt gtgatccgac      1140
     ttaaacaaca ggtctcgcag tgtggattcg aaaagtatgg cactgaagtg agccacatct      1200
     tgagcgacat ctacatgata gatgcagtgg ttgagggatg ttcctccaac gaagttcgac      1260
     gaagagtgct actgatggat ttgtctttcc cggaaatcga agctctggga attgcgcaag      1320
     agagtgtaga tcagcaaata gcggagatgg cgatcggtca accgccggag aaagttttca      1380
     gaattgaaca gcagggaaga tttcgaggaa aatccacggg aagaactgcg aagccaaccg      1440
     agaagtcttg tttcaactgc ggtcggttgg gacacttcgc tgcttcacct gtttgctcag      1500
     cccgcgggaa acaatgccga aattgcaaat gctacggcca ctttgaaaaa ctatgccgga      1560
     aggcgaaacg atcggcggtt aaagatacgg acaaactcat cagggtcgta gaagaaacac      1620
     cgcagcagga aacgctgaaa atggaaccag agaagcacga agcgaaggtg tattacgcct      1680
     tctactcggg aaatgaatct aatgtcataa catgcatgat tggaggagtt tccttggaga      1740
     tgctggttga ttccggcgca gatgccaact tggttagcgg tgagatgtgg gagaaactga      1800
     aaaacgaaaa cgtggcagtg ttttcatcga caaagggaag ctctcgtatc ttgcgcgctt      1860
     atggaagtca agatccactc atgatcctcg gttcattcgt tgcggatatt gaagtaggtg      1920
     atcagcatag tcgcgcggag ttttttgtgg tgcacggagg acaacgatgc ttgctaggcg      1980
     acaagacagc taagcagctg ggggtactga aggtcgggtt ggacatcaac agtgtggcgg      2040
     taagtccttt ttcgaagatg aatggcataa aagcaaagat ccagttcgat ccggcggtag      2100
     ttccggtgta tcagccgatg cgtcgaatcc ctgtgccttt ggaagaagcg gttgacagga      2160
     aactggatga aatgttgaac cgggacataa tcgaggtgaa aactggacca acaacgtggg      2220
     tatcgccatt agttgtagtc ggaaaatcaa atggagagcc tcgactgtgc ctggatctac      2280
     gaagagtcaa cgaggctgtg ttgagggaac accatccgat gccatcggtt gacgattact      2340
     tggcgaaact ggggcgggga cagttgtgga gcaaactcga catcaaggaa gcattccttc      2400
     agattgagct agacgaggat tccagagacg caacaacttt cattacgcga cgggatttgt      2460
     atcgcttcaa gcgattgccg tttggcttag ttacagctcc tgagctgttt caaaaagcaa      2520
     tggatgagac actatccggt tgcgagggaa cagtctggta tctcgatgat gtgcttgtcg      2580
     aaggccgaga cctacaagaa cacgatcagc gcttggagca ggtaaagttg taatttgata      2640
     aatcataata aaatctcttt tttttgtgat ggcaaatcct gttgtttgac ctttactgag      2700
     cttcttccct aatacgcatt gttgttattt ctgtcttcct gtctgcaggt cataaaacga      2760
     ttgaaaaacc ggggcattga acttaattgg gagaaatgcc aactgcgagt aaccgaattg      2820
     gacttcttgg ggcatagagt ttctcgggac ggaattatgc ctgcaaaaag taaaattcaa      2880
     gcaattcaat cgttccgtga accacaatgc gaagctgaag ttcgcagctt tctggggctt      2940
     gcgaattatc tcaataagtt tgtaccgatg ctagctaccc ttgatgaacc actgcgcagg      3000
     ttactacaca aagatactag gtttgaatgg acacaggagc aatccaaatc gttcaacgcc      3060
     ataaaagaag ctatgggaag aattcaaaat ttgggtttct accgagttga ggatcgcaca      3120
     gctgtcatca ctgatgcgag cccgtatgga ctaggtgcca tgctaattca atttgatgaa      3180
     gctgatagac atcgtgccat tggctttgct tccaaagctt taaccgatac ggagcgtcgc      3240
     tattgccaga cggagaagga agccctggca atagtctggg gcgttgaacg gtttcaatat      3300
     tatctcctgg gaaaatcatt tgacatcttc acggactgca aagcattaag ttttcttttc      3360
     tcaaaaagat ctaagccatg ctcgcgaata gaaaggtggg tgctgcgcct acaggctttc      3420
     gactatagaa ttgtattcat gtcagggaaa cacaatgtgg ctgacgcctt gtctcggctg      3480
     ccagtacagg aagcaacacc atttgatccg tcagaggaaa ttttcgtgcg agaggtagcc      3540
     acacatgcag ctagttcttc ggctttgcgc tggagtgata ttaaggaagg tagccaatca      3600
     gaccaagaaa ttcaggaagt cttggaacta ctggtcagtg gagagacaca aaagttgcca      3660
     atcacatatc gcgtgattgc tagcgagctt tgtgagctgg aaggggttct tcttcgagga      3720
     gatcggatcg ttgttccggt ttctctcaga aatagagttt tggtaactgc tcatgaaggt      3780
     catccaggca ttacgatgat gaaaaaccac ctgaggtcca atgtatggtg gcccaaaatg      3840
     gatgctcatg tggaacaatt cgtgaaaaac tgcaggggtt gtactcttgt tggtgctcca      3900
     gaacctccgg agccgttgct gcgaagccag ctgcctagtt ctccatggca tacgatagcg      3960
     ttggattttc ttggtccttt gccagaagga cagcacctcc tagtagtaat cgactgttat      4020
     agccgattca ttgaggtatg cgaaatggat acaaccacta ccagcgatgt cataagggaa      4080
     ttatccataa tgttcagtcg ttacggaatt ccactttcca tgaaagccga taatgcccct      4140
     caacttagtg gagagtgcgc tgagttgaag gagttttgcg acgcgaacgg tgttaaactc      4200
     ctgaacacca tcccctactg gccccaatct aacggggaag tcgaacggca gaaccgttcg      4260
     attttgaaac ggcttcgcat agctcaagag cttggacgag attggcgaca ggagctgtat      4320
     ttgtacctac tgacgtacca ctctaccaag catccgacca cgggcaaatc tccaggagag      4380
     attatgtttg gccgccgcat taaaagcaaa ttacccacag tttcatcttt tcaagaagat      4440
     gcaggagtga gagagaggga tttggtaata aaggagaaag ggaaactata cgcagacaaa      4500
     agacgtgggg cgatggaaag ctctattcaa gagggtgacc atgtactggt caaacggatg      4560
     aggaagtcta ataaacttga tgcagatttc agcaatgaag agtttattgt tcgtcgtaag      4620
     acaggtaccg atacagtgat ccagtcaaag gaaactggta agcagtatag aagaacttca      4680
     gctcatctta agaagattag agaccgttct gattcatctt cctgtgaagg acaacattcc      4740
     aagccattga tggatgtaga taccagccct gccaaggacg aggaacctgt tgattcattt      4800
     cctgcactag ccaaacgatc gagacaacca ccaatgaagc atcgcgacta cgtgccacac      4860
     taggacacct acagaagttt aaatgtatgt aaaatccttc attaaacatg aattcaatta      4920
     catgaatgaa taaaactgtt tcgtttgaac taattgttaa agcccttgca aggtattcaa      4980
     ttttctttat tcaaaggggg ggt                                              5003
//
ID   Gypsy-26_AA-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   supercont1.85;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_AA_;
KW   Gypsy-26_AA-I; Gypsy-26_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.85; Positions 1513349 1513158.
XX
SQ   Sequence 192 BP; 50 A; 45 C; 43 G; 54 T; 0 other;
     tgtagtatat tacacaacct tgctactatg agtaccatac cataagtatc attaactttg        60
     cgctcgtcgt ccatgatgct gctgtcacac acactgataa acaggattcg gtacccaggt       120
     cggtgtgtga tctcgttcgt gggaagagac actttttgtt agactacggg cacgacgaga       180
     cgcattgtca ca                                                           192
//
ID   Gypsy-26_AnFu-I repbase;    DNA;    INV; 4233 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4233
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2911-2911 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..4199
FT                 /product="Gypsy-26_AnFu-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAPKRSVSRRQGSPELSSTRYEDPMVPERKVMIADER
FT                 LLHPQELRALIPEFRGSKVNLWLETIEHYAQLYEWQDRSKLLYASCRLEGA
FT                 AKAWYDGFRSTIKTFSEFCLAARKAFPDQRNEAEVHMELQRVTKERDETYE
FT                 QYVFRVNAIGVTGKVSELAIISYIIRGLSFDPVYSSIISKKYHDIYELLDQ
FT                 LKWCENNMNLRKKKDEYKTSAYTSGKKDNEHQTTTPTAAKKDIVCYNCGEK
FT                 DHKSTVCPKPRQADTCSYCHRVGHRSEVCRRRTPAQHAFKPSVNAATTVND
FT                 EHYRFEEQSLETNEEAKTWVSVKMGEKNIMANALVDSGSAVTLITATILPK
FT                 DVQWQPAHVETEVVGVNQSVIEKLGSWATTLSVQGREYSACFLIVPEKTIW
FT                 SDIILGRDFLRMNNIVHIRMTKENPKYEELKCTNLLKQEFGELVDHIDEIL
FT                 TTNIEIELDVGDTDITRNEKNIIETMYKKEYEEQIKPREPKVKYSCDIKLK
FT                 EDKYFTASPARLSYTEKDELNKLISDLKREGIIRESDSPYTSRVVLTKKKN
FT                 GSYRMCVNYKPLNKLVERVHFPMPVIEDQIMKLQGKNYFSSLDLKNGFYHV
FT                 ALSENSKKYTSFVTADGQYEFNRLPFGYANSPSIFVKFISKVLDPMIRNGK
FT                 IIVFVDDILVATETIPEHLKNLKELLNLLNDNCIRLNVDKCQFLKTKIEYL
FT                 GYDISHNQIQPSDRHVESIKRIPVPISRHSLQRFVGLVSYFRKFIYQFNRI
FT                 AAPLYELLKGTSEFILEKEHIEAIERLKQVLIEKPVLCIYSHTAETQLHTD
FT                 ASSSGYGGILMQKQTDDNQFHPVMFFSRKTTTVEAKLHSFELETLAVVYSI
FT                 QRFRMYLFGIKFTIVTDCNSLKVTLDKRDVSPKIARWSIFLEQYDYNIIHR
FT                 SGDRMGHVDALSRIGVFILDEEDRTEDNLFNKAMYVNQLRDEKVQKIIGNV
FT                 INGDSNGYEIRDRILYRQQGQLSLLYVPENMESSVIYKYHNEMGHFGRDKV
FT                 REMITRVYWFPNMKEKLNEHIKSCIVCIHYNPKDRKYDGKMNLIEKPQQPF
FT                 EMVHVDHVGPIGTVKSGNKYIFAICDAFTKFIKLYATKTTSTREVNKHLKS
FT                 YIIAYSRPRILVSDRGTCFTSESFEKMTKDHGIQHILNATACPKANGQIER
FT                 YHRTVIPLLSKLVEERGQPWDVVLSEAEYLMNNSINRASGFTPAKLLFGVA
FT                 QKREYNGDLTEYLEQLQEQEERDLENLREQASETIRANQEYNKQVYDRRCK
FT                 INTRYKKGDLVVIRRPKALGESSKLQPKFKGPYQISKVLDRNRYVVRDIEG
FT                 HQVSGIRFEGIFDPLNMRLYEPAQEELYH"
XX
SQ   Sequence 4233 BP; 1543 A; 679 C; 937 G; 1074 T; 0 other;
     gtttttcaga agtgggataa agcccaattg tccggaattg tgtaaattcg ttccgaagtg        60
     gattgtcgtc atacgaaccg tagctaaccg tggtgtacaa gtgagacggg acaaagagga       120
     aagtgcgcat agataaaaca cgtgcgtgga tattataaag acgacgtgaa aataaaatgg       180
     caccgaaacg ctcagtcagc cgtcgccaag gtagcccgga attgagctcg acacgctatg       240
     aggatccaat ggtaccagag aggaaagtaa tgattgcaga tgaacgatta ttacatccac       300
     aagaattgcg tgcgttgata ccggagtttc gaggttcaaa agtgaatctg tggctagaaa       360
     ccatcgagca ttacgcgcag ctatacgagt ggcaggatcg ttcaaaatta ttgtacgcga       420
     gttgtcggct ggagggagca gcaaaagcat ggtacgacgg gtttcgaagt acaatcaaaa       480
     cgttctcgga attctgtcta gcagcaagga aggcgtttcc tgatcagcgc aacgaagcag       540
     aagtacatat ggagttacag agagtgacaa aagaaagaga cgaaacatat gaacagtacg       600
     tgtttcgggt gaatgcgatt ggagttactg ggaaagttag cgagttggct attatttcct       660
     atatcatacg aggactatcg tttgatccgg tttactctag cattatttca aagaaatacc       720
     acgatattta cgagttgtta gaccagctaa aatggtgtga gaacaacatg aacctccgga       780
     aaaagaagga tgagtacaaa acttctgcat atacttcggg gaagaaagac aatgagcatc       840
     aaactactac accaacagcc gcaaagaaag acattgtttg ttataattgc ggagaaaagg       900
     atcacaagtc aacggtgtgt ccaaagccga gacaagcaga tacgtgtagc tattgtcatc       960
     gagtaggaca tcgctctgaa gtttgtcgac gcagaacacc agcgcaacat gcgtttaagc      1020
     cgagtgtgaa cgcagctacc acggtaaacg atgaacatta tcgattcgaa gaacaatcat      1080
     tggagacgaa cgaagaagct aaaacgtggg tgagtgtgaa aatgggtgaa aagaacataa      1140
     tggcgaatgc tttggttgac tcgggaagtg cagtgacctt aataacagcg accattttac      1200
     ccaaagatgt acaatggcaa ccagcacatg tagaaacgga ggtggttggc gttaaccaat      1260
     ccgtgatcga gaagctgggt tcctgggcaa caacactctc cgtgcaagga cgagaatatt      1320
     cggcgtgctt cctgattgtt ccggaaaaaa ccatatggtc agatattatc ctgggtcgtg      1380
     attttctacg aatgaataat attgttcaca ttagaatgac aaaagaaaat ccaaaatatg      1440
     aagagctcaa atgtacaaat ttgttaaaac aggaattcgg tgaactagta gaccatatcg      1500
     atgaaatatt gacaacgaat atagaaattg aattagatgt tggtgataca gacataacgc      1560
     gtaatgaaaa gaatataata gagacgatgt acaaaaaaga gtatgaagag cagattaaac      1620
     cgagagagcc taaagtaaaa tactcttgcg atataaaact taaagaagat aaatatttta      1680
     cagcaagccc agcacgatta agttacacag aaaaagatga attaaacaag ttgataagcg      1740
     atctgaaaag ggaaggtata attcgagaaa gcgactctcc ttatacaagt cgagtagtat      1800
     tgactaaaaa gaagaatggt agttaccgaa tgtgcgtaaa ttacaaacca ttgaataagt      1860
     tggtagaaag agtacatttc cctatgccag tcatagaaga tcagattatg aagctgcagg      1920
     gtaagaatta cttttcatca ttagatctaa agaatggatt ttatcacgta gcgctctctg      1980
     aaaattcaaa gaagtataca tcatttgtaa ctgcagatgg tcagtacgaa tttaataggc      2040
     ttccatttgg gtatgctaat tctccttcaa tatttgttaa atttatcagc aaagtactgg      2100
     acccaatgat aagaaatggc aagataattg tatttgtaga tgatatactt gtggcaactg      2160
     aaactattcc tgaacattta aagaacttaa aagaactttt gaatttactt aatgataatt      2220
     gtataagact aaatgtagat aaatgtcagt tcctgaaaac caaaatagaa tatctgggat      2280
     atgatataag ccacaatcaa atacaaccat cagacagaca tgtagagtct atcaaaagaa      2340
     taccagtacc aatttcgcga catagtttac aaaggtttgt aggccttgtt agttattttc      2400
     gtaagtttat atatcagttt aacagaattg cagcaccatt atacgaatta ttgaaaggaa      2460
     catctgaatt cattttggaa aaagaacaca tagaagctat agaaagactt aagcaagttt      2520
     tgatagaaaa accagtttta tgcatttact ctcacacagc tgaaactcaa ttacacacag      2580
     atgcatccag tagtggatat ggaggaatat tgatgcaaaa acaaacagat gataatcaat      2640
     tccatcctgt aatgttcttt agtagaaaga cgacaacagt cgaagctaaa ttacacagtt      2700
     ttgaactcga gacgttagct gttgtgtata gcattcaaag gtttagaatg tatttgtttg      2760
     gtataaaatt tactattgta acggattgta attcgttaaa agttacattg gataaacgag      2820
     acgtaagtcc taagatagcc agatggtcaa tatttttgga acagtacgac tataacatta      2880
     tacatcgcag tggtgataga atgggccatg tcgatgcatt gtctagaatt ggagttttca      2940
     tattagatga agaggacaga acagaagaca atctgttcaa caaagcaatg tatgtcaatc      3000
     aattaagaga tgaaaaggtg caaaagataa taggtaacgt gatcaatgga gattcaaatg      3060
     gatacgaaat cagagatcga atactttata gacaacaagg tcaattatca ttactttatg      3120
     ttccagagaa tatggaaagt tcagtcattt acaaatatca taatgaaatg ggacactttg      3180
     gaagagataa ggttagagag atgatcacaa gagtatactg gtttccaaac atgaaagaga      3240
     agttgaatga acatataaaa tcatgtatag tttgtataca ttacaatcct aaagatcgga      3300
     agtatgatgg taaaatgaat ctcattgaaa agcctcagca accgtttgag atggtacatg      3360
     tagatcatgt aggtccgata ggtacagtga aaagcggtaa caagtacata tttgcaattt      3420
     gtgatgcatt cactaagttc attaaactgt atgctaccaa aactacatca acgagagaag      3480
     taaataagca cttaaaatcg tatattatag catactctag gccgcgaata ttagtatctg      3540
     atagaggaac atgttttaca tcggagagtt ttgaaaaaat gacgaaagac catggaatac      3600
     aacacatttt aaacgctact gcatgtccaa aagcgaacgg acaaatagag aggtatcata      3660
     gaacggttat tccattacta tctaaattag ttgaggagag aggtcaacca tgggacgttg      3720
     ttctttcaga ggctgaatat ctaatgaaca attctattaa cagagcctca ggatttacac      3780
     ctgcgaaact tttatttgga gtagcacaga agagagaata caatggagat ctcactgagt      3840
     acttagaaca gctccaggag caagaagaac gagatcttga gaatttacgt gaacaagcct      3900
     ctgagacaat acgtgcaaac caggagtata acaaacaagt ctacgacagg cgttgcaaga      3960
     taaacacaag atataaaaaa ggagacctgg ttgtaattag aagaccaaaa gcgttagggg      4020
     agagcagtaa gctgcaaccc aagtttaaag gaccgtatca gatcagtaaa gtgttggatc      4080
     gaaatagata cgtagtcagg gacatcgaag gccatcaggt gtcaggaata cggtttgagg      4140
     gaatatttga tccccttaac atgaggcttt atgagccagc tcaagaagaa ttgtaccatt      4200
     gagggcaatg gtaggtagtc aggatggacg agc                                   4233
//
ID   Gypsy-26_AnFu-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-205
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2839-2839 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 205 BP; 67 A; 35 C; 58 G; 45 T; 0 other;
     tgtaggcgcc tggacaatgg acaacgtcga atgacagttg ggcgttgatc caacctggcg        60
     aaaaaggtga actgtcaaat gacagacgtt gaacaagggg ctttttgtgg taaccgtcgc       120
     agagaacgga cggaaaaata aagtgcggat aaagagccaa agagattgaa cagtggtttt       180
     attttcgcat gattaaacgc ctata                                             205
//
ID   Gypsy-26_AnMe-I repbase;    DNA;    INV; 6000 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6000
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6838-6838 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1571..2476
FT                 /product="Gypsy-26_AnMe-I_1p"
FT                 /translation="MAAKLDISLALKLVKPFDGTNTLLNPYIESVELLLDY
FT                 AEKVPEVDIVKFMKTTLIGTAHGVIDTACNVKEAFSLLRTRFSVHLTPLAV
FT                 EKELTALKQGSKTISEFGKELEKMAAKLSAAHVAVGTFSTEFAAHSIVNPI
FT                 IVRAFTQGLNEANTRFFLQARNPLTLCKAISDALECEPIAERSTALWYQTP
FT                 RPSQRYTRRPQNSYYPRQSYNPAYRGRPYQRYSSNQGYENQPRNITNNNQR
FT                 GYRSRNYSNSHFQQRMPSATSTERSNNNNRVHLGNANDLEDFHDAVPNSNE
FT                 EHDEIINLFR"
FT   CDS           2463..5957
FT                 /product="Gypsy-26_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LIYFVKLQFDTGVKAKFCLFGINRDLVIDTGATCCVL
FT                 NSNYVPKQAVIDKTYTISIHGINGTTKSLGCIETSIYANTQNFPIIFHVVD
FT                 TLPCHIVGLIGANFLRKHKANINFENMSLTCNANHKQTCFIIPPRTEFVTF
FT                 IDTTHTDTCVVLNEKIQPNVYIANTIANPKNGKLPIRIANFQNKSVTITKL
FT                 QPTITPASDFNILEIKTPQHNIDHANQMLKELDLSHLHEDEKEVIAKICLK
FT                 YNDIFCLQNDKLSTTTVYEASLKIKNNTMPIYSKPYRLPYAQKEEVDNQIR
FT                 KMLKNKTIEATQSEWNSPILLVPKKANADKKKWRLVIDYRKVNNVLQDDKF
FT                 PLPNIDEVIDTLSGSKYFSHLDLSQGYYQCKLRKEDRPITAFTTPTGQYQM
FT                 TRLPMGLKISPSTFSRMMTVAMSGLNAEQCLIYLDDIVVFGKNMQEHNKNL
FT                 LDVFERLRQVNLKLNXEKCHFLKKELIYLGHYISAEGIKPDPQKLKCINDW
FT                 QPPKSSDEVKRFVAFANYYRKHIKNFAAICMPLNRLTRKGIPFDWTPTCQT
FT                 AFDTLKEHFVNPPVLDFPDFSENNTFVLHTDASNSAVGAVLSNQNGKPISF
FT                 ASKALNKAELNYATIEKELLAIVWSVKHYRPYLYGRHFNIFTDHRPLVYLF
FT                 TMNNPSSRLTKFRLALEEYNFTICYKKGTENVIADTLSRLPLSDLKTMSAQ
FT                 EEILITTRSKAVSNDTCQNNNNSAVSKANYIKLQFCNDAKDLVISKDNIFL
FT                 PKSYTIVHLRGMIVRIKAHVKALKHKTYLVIETNDEITKQFMKQLKTLNEK
FT                 GMPEIIVLNEKVEVVKDCEKAKKLVIMNDFHTLPTAGHAGFHRTVNTIKQR
FT                 YTWPGIDKDVKEMIAKCKQCQLYKSNKPPKIPLKITNTAKTSMEKIFIDLV
FT                 GPLVNSHGFEYILTTQCDLTKFVTATPIQNKRTETVAKVFVEQVILKYGVP
FT                 ETICTDRGTEFLSTLFNEICKLLQIEKLQSTAYHHETVGALENSHKQLGNF
FT                 LRIHSDRKALDWHKWTNFYEFAYNNTVHTATGYTPFYLMYGRPANIPSNVI
FT                 KEKVNRVQYDLENYATILRLKLNIAHEEVRNRLIQNKIKSKEYYDEKTKHK
FT                 TFQPGNQILIRGENVKKLETPYSGPFTVLEDTGENVIIEDNGKTDVVHKNR
FT                 VKEWHL"
XX
SQ   Sequence 6000 BP; 2263 A; 1149 C; 1016 G; 1569 T; 3 other;
     tggcgatcct gccaactcaa agtgtgcttc gtaccgtgct attcagtawa aaaaagtgca        60
     gtgaataata gttgcaaatt tggtcgactc taccaaataa tcacgcatgg ctacacgaaa       120
     cgaaaaagct acgtaaaata gctgtattaa tgcaccgagc aatacaagcg tacaagcctc       180
     accttcacat tgcgtgacga caaacgacac ccaaaaccga gcatcaccat taccattggg       240
     taacgccaga aaaaatcacc aaatcagaag agaattatct gcgctgaccg acaaaccaaa       300
     tcagcacgac gagcagcacc tgtaactaaa tacagctaca gcagcgtgcc gaccgccatc       360
     gcactaacca acggaacacg ggacgtcagg gcatcgaact tcgccatcgc aacgatcgaa       420
     aaaaaaaagt gacatcaagg caccgtgctc caaaagcgtg ctawtaacga aaatacaaca       480
     tccgagaaca tccttccacc gagcgaagaa gaaatccagc atccgagagc atcatcgcgc       540
     cgagcaacag aacgcgttac atcgagagca agctgcgcca gcgcgttgaa cgagagagcc       600
     acaccagcac gtctagcgcc gccatcgcgc tgatgattca cttcgagcca gctgcagacg       660
     cataacctat acgcaataaa aggtacgtga tacccccaca agtaagtgcc acaaaaaaaa       720
     aaaaagtgat tttgtaactt aagctagata ggatgtttta tttagttttg ctatttattt       780
     tttttaaact gtgcattatt tatttcaaaa tattttaatc gtattaaatc ataaatcgtg       840
     tttgaaaaaa aaaaagagga agaagtgtta ggtaaagtga aaaaaagtcg aagtgttagt       900
     gcagttacag cattcctatc cacgttaacc ctttgcattg gttgtttttg ctagtaagtt       960
     ggagcctcgt gatccttcgt gataatctca tataatcggg cttaattaaa tcgttcgaac      1020
     gtgatgagct cttatcagtt ttttgggttt tcacaattct aaaaaaaaaa ataataataa      1080
     taataataaa tttaaatatt tttcatcata tgtttttttt tcaccatgcg atataagtgt      1140
     taacagtgcg taaaacaaaa aaaataataa taataaaaat atatatatat ttatataata      1200
     ataataatac attttttttc cttatcatat aaagtgcatt catgtaaagt gtcatataaa      1260
     gtgatttacc tgttatctta ttaataatat tttctttcca agtggtgtct aaataactat      1320
     tacatttttt aagttcctgt atacctgcta ctagttcata ctcttacgca tattgttaaa      1380
     ttgaattttc ccgctaaatg aaaaaaaatc attaccagct actagcaccc ctgcaactag      1440
     aactactagg aataaaacta atagtacccc tgcgattaaa accaatacaa ataaaactac      1500
     tggtatccct tccaataaaa ccattataaa cgaaaccatt acaaaagtaa cctgcagtga      1560
     accttgcaca atggcagcca agttggatat tagtttagca ctaaaactgg tcaaaccttt      1620
     cgatggtacc aatacgctat taaatccata tattgaaagt gttgaactac ttttagatta      1680
     tgctgaaaaa gtgcctgaag tggacatcgt taaatttatg aaaaccacat tgattggtac      1740
     tgctcatgga gtcatagaca cagcatgcaa tgtaaaagaa gctttcagtc ttcttcgtac      1800
     acgattcagc gtgcacttaa cgccgctagc tgtagaaaaa gaattaaccg cgctgaaaca      1860
     aggctcaaaa actatttccg aatttgggaa ggagttagaa aaaatggcag ctaaattatc      1920
     agcagctcat gtagctgtag gaactttttc tacggaattt gccgcacata gcattgttaa      1980
     tccaattata gtacgcgcct ttacgcaagg tttgaatgaa gctaacacaa gatttttctt      2040
     gcaagcacgc aatccgctta cactttgcaa agccatatca gatgctttag aatgtgaacc      2100
     gattgcagag cgatcaacgg ctctttggta tcaaaccccg cgtccatcgc aacgctatac      2160
     gagacgcccc caaaactcat actatcctag gcaatcgtat aacccagcat atagaggtag      2220
     accataccag cggtattcta gtaatcaagg ttatgaaaac cagccacgaa atattacaaa      2280
     taacaatcaa cgtggatata ggagcagaaa ttattcgaac agccactttc aacagcgaat      2340
     gccaagcgca acatcaactg agcgaagcaa taacaacaat agagtgcatt tgggaaatgc      2400
     taacgatttg gaagattttc acgatgcagt tccaaactca aatgaagagc atgatgaaat      2460
     aattaattta tttcgttaaa ttacaatttg atacgggcgt taaggccaag ttttgtttat      2520
     tcggaattaa tcgcgatcta gtgattgata ccggagctac atgttgcgta ttaaattcaa      2580
     actatgttcc caagcaagcc gtcatagata aaacttatac aataagtatt cacggtatca      2640
     acggaactac taaatcttta gggtgcattg aaacaagcat ttatgctaac acgcaaaatt      2700
     ttccaatcat atttcatgtc gtagatacac ttccatgcca cattgtagga ttaataggag      2760
     ctaacttttt gagaaaacat aaagctaata taaattttga aaatatgagt ttgacttgta      2820
     atgccaacca taaacaaaca tgttttataa tcccacccag aacagaattt gttaccttta      2880
     tcgatactac acacactgat acttgtgtag tgcttaatga aaaaattcaa ccaaatgtgt      2940
     acatagctaa cacaatagcg aatccaaaaa atggtaaatt accaatacgc atagcaaatt      3000
     ttcaaaataa gtcagtaaca ataaccaaac tacaaccaac tattacaccc gcttcagatt      3060
     tcaacatctt ggaaattaaa actccgcaac ataatattga tcatgctaat caaatgttga      3120
     aggaacttga tttatcacat ctacacgaag atgaaaagga agttattgcc aagatttgtc      3180
     tcaaatataa tgacatattc tgtttgcaaa atgataaact aagtaccact acagtttatg      3240
     aagcgtcttt aaaaataaaa aataatacta tgcctatata ttcaaaacca tacaggttac      3300
     cgtatgcaca aaaagaagaa gttgataacc aaatccgtaa aatgttaaaa aataaaacaa      3360
     ttgaagccac acagtcagaa tggaacagtc caattttatt ggttcccaaa aaggctaatg      3420
     ctgataaaaa gaaatggagg cttgtaatcg attatcgcaa agtaaacaat gtattgcaag      3480
     atgataaatt ccctttaccg aatattgatg aagtcataga taccttatca ggatctaaat      3540
     atttttcaca tctagattta tctcaagggt actatcaatg caaattaaga aaagaagatc      3600
     gaccaattac cgcctttact accccaactg gtcagtatca gatgacaaga ttgccaatgg      3660
     gactaaaaat aagtccttct actttctcga gaatgatgac agtggcaatg tcaggcttaa      3720
     acgcagaaca atgtctcatt tacttggacg acatcgtcgt atttggaaaa aacatgcagg      3780
     aacataataa aaatttattg gatgtctttg agcgattacg gcaagtgaac ctcaaattaa      3840
     acmcggaaaa atgtcatttt ttgaagaagg aattaatata tctgggacat tatatttccg      3900
     cagaagggat aaaacccgat ccacagaaac tgaaatgcat caacgattgg caacccccta      3960
     aatcctccga tgaagtgaaa cgttttgtag ccttcgcaaa ttattataga aagcacataa      4020
     agaattttgc cgctatttgc atgccattaa accggctaac aagaaaagga attccatttg      4080
     attggactcc cacttgtcaa accgcgttcg acacacttaa agaacatttt gttaatcctc      4140
     cggtcttaga cttccctgat ttcagtgaaa acaatacttt tgttctacat accgatgcct      4200
     ctaacagtgc agtaggtgca gtactaagta accaaaacgg gaaacccatt tcgtttgcca      4260
     gtaaagccct taacaaagcc gagcttaatt atgcaaccat agaaaaagaa ttgttggcta      4320
     tagtatggtc cgttaaacat tatcgtccat atctttatgg aaggcatttc aacattttta      4380
     ctgatcatag acctctagtc tatctcttta ctatgaacaa cccctcaagc cgtttaacca      4440
     aatttaggct agcgttggaa gagtataact ttactatttg ctataagaaa gggactgaaa      4500
     atgtaatagc cgacacctta tcaagattac cattatctga tctaaaaacc atgagtgcac      4560
     aggaagaaat actaattaca acaaggtcga aagctgtcag caacgataca tgccaaaaca      4620
     ataataattc agcagtatct aaagccaatt atattaagct gcagttttgt aacgatgcaa      4680
     aagaccttgt tatttcaaaa gataacattt ttttgccaaa atcttacact atcgttcacc      4740
     tacggggtat gatagttagg attaaagccc atgtgaaagc actgaaacat aaaacatatt      4800
     tggtgataga aacaaatgat gaaattacta aacaatttat gaaacaatta aaaaccctga      4860
     atgagaaggg aatgccagaa atcatcgtac tcaacgaaaa ggttgaagta gtaaaggatt      4920
     gtgaaaaagc gaaaaagctg gtaataatga acgatttcca taccttacca acggcaggac      4980
     acgcaggatt ccatcggact gtcaatacga tcaagcaaag gtatacgtgg ccagggattg      5040
     ataaagatgt aaaagaaatg atagccaaat gcaaacaatg ccaattatat aaatcaaata      5100
     agccaccaaa aataccacta aaaataacaa ataccgcaaa aacaagtatg gaaaagatat      5160
     tcattgacct agtaggtcca ttagtaaatt cacatggctt tgaatatatt ttaacaacac      5220
     agtgtgattt aaccaagttt gtaacagcca cgccaataca aaacaaaaga actgaaacag      5280
     tcgcaaaagt attcgtagaa caggttatcc ttaagtacgg agtgcccgaa acaatttgta      5340
     cggatagagg cacagaattc ctttcaacac tgtttaacga gatatgtaaa ctattacaaa      5400
     tagaaaaact gcaatccact gcgtaccatc atgagacagt aggagctctt gaaaactcgc      5460
     acaaacaatt agggaatttt ctaagaatac acagtgatag aaaagcgtta gattggcata      5520
     aatggacaaa cttctacgag tttgcctata acaatacagt acacactgct acaggttata      5580
     ccccgttcta ccttatgtat ggacggccag caaatatacc atctaacgta ataaaagaaa      5640
     aagttaacag agtgcaatac gaccttgaga attacgcaac tattttaagg cttaaattga      5700
     acatagcgca tgaggaagta aggaatcgtc taatacaaaa taagattaaa agcaaagagt      5760
     attacgacga aaaaacaaaa cataaaacat tccaaccagg caaccagata ttaattcgag      5820
     gagaaaatgt aaagaaattg gaaacgccgt acagcggtcc gtttacagta ttagaagata      5880
     caggagaaaa tgtaataatt gaggataatg gaaaaaccga tgtagtacat aaaaataggg      5940
     taaaagaatg gcacttataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa agataaggcg      6000
//
ID   Gypsy-26_AnMe-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-208
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6863-6863 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 208 BP; 60 A; 36 C; 50 G; 61 T; 1 other;
     tgttgtgtcg acataattta ggtagcactg taagtagttt tcgttaagta taaaacactc        60
     attagctagg gagtgcccaa gcggggcact cacaacagga tatataagtg tgcacgtggt       120
     gggtatcgct cttcttctgt tgtaacgtga gagcggtaac aagtacaata aactwccgtt       180
     tctcgaaaag tggtgtctta atataaca                                          208
//
ID   Gypsy-26_CQ-I repbase;    DNA;    INV; 4330 BP.
XX
AC   AAWU01010854;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_CQ_;
KW   Gypsy-26_CQ-LTR; Gypsy-26_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4330
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 431-431 (2011).
XX
DR   GenBank; AAWU01010854; Positions    6528    2199.
XX
CC   Positions [3374-3844] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..2776
FT                 /product="Gypsy-26_CQ-I_1p"
FT                 /translation="MSDPDLKSLLEKLTEVCLQNQDLQKEQQAQQKALQDL
FT                 VKTVTAKPIIAPPKLNANTNDNKEFLLESLANTMVEFHYDPDSDDGLFDVW
FT                 YSRYADTFSQDACKLDDASKVRLLLRKLDTRAHSRYANFILPKKPKDNDFE
FT                 ESVTKLKEIFSRRTSLFNKRCKCLQFIKPESNDFIAYAGAVNRLCEDFKLS
FT                 SLKENEFKALIFVCGLRSHRDSEIRTRLLSKLETDAATLTVDTLATECQRL
FT                 LNLKQDTALIENAAHSSTSVVNSLSDKYRGKSNQKRQDKPQQKQKSDARKT
FT                 PKSPCWLCGGVLYTEACPFVKHVCKECKQIGHKDGYCAFARPSGKPQRSSV
FT                 KEVSSDQTSARRRRKFVSILINGKPIKLQIDTASDITVISRDNWLALGSPA
FT                 TRPTSHEATSASGGHVKLEAEFECSVTLQDSCRSTVCYVAPNSNLNLLGLD
FT                 LIDAFDLWSVPLSSVCNRVTVADGVLDQVHQLQRKFPEVFLDTLGLCTKTK
FT                 VKLFLKPNQQPVYVPRRPVAQTAYEPLQDELRRLENLGIISFVEHSDWAAP
FT                 IVAVRKANGSIRICGDYSTGLNNALQPNDYPLPVPDDIFASLAGMRHFSII
FT                 DLSNAYLQIEMDEDSKNLLTVNTHRGLFKFNRLAPGVRPATGAFQKIMDSM
FT                 TAGLTGVRVYLDDILVGGATEEEHLHNLHAVLERIRDYGFHLQLSKCRFFM
FT                 DEIKYLGHVVNSSGIRPDPAKLQAISTMPPPKNVPELRSYLGAVNYYAKFV
FT                 SEMHRLRHPMDQLLKANAQWNWTKDCQRAFEEFKRLLSSDLLLTHFDPRHE
FT                 IIVAADASNTGIGACLMHRLPTGAIKVVQHRSRSLTPEEKNYGQIEKEGLA
FT                 LVFGVMKFHSMIYGRHFTLQTDHKSFSQSQLAQGHS"
FT   CDS           3092..4318
FT                 /product="Gypsy-26_CQ-I_2p"
FT                 /translation="MIAEPEAKLFFCRRFALSVVEGCLLLGERVVVPEVYR
FT                 KRILKQLHKAHPGIVRMKSLARCYVFWPRIDADIEDLVRACPKCAAAAKLP
FT                 TKAPLQSWPTPNGTWERVHIDYAGPMNGVFFFVVVDAYSKWPEIFATPSSS
FT                 TKATIKLLRQCIARFGRMDLLVSDNGPQFTSAEFRTFLKQNGIQHVTTAPY
FT                 HPASNGQAERFVDTLKRALKKINEGEDLEETLQVFLQAYRSTANPQAPGGK
FT                 SPAELMLSRRPKSTFDLLRAPSMPPKPTPANEKQNADYDRKHGAVERCFAP
FT                 GDLIFAHVFRRNDFTWAPGQIIEKVGAVNYVIKLEGSNRPIKVHTNQIRRR
FT                 RVANATSAEVQPGTLPLDILLDNFEIETQPLPSGDSPVLPGDDRPFPRRSE
FT                 RDRRAPDRYTPGLWA"
XX
SQ   Sequence 4330 BP; 1002 A; 1302 C; 1168 G; 858 T; 0 other;
     tttttggcga cgaggacgct gcaaatttcc ggtgtcctgt acaacccgtg gaatttgcgg        60
     aaaagaaccc ggctctacgt tacccgccga acctaacctc aaccggacaa tgagcgaccc       120
     ggatctgaag agcctcctgg agaagctgac cgaggtctgc ctccagaacc aggacctcca       180
     gaaggagcag caagcccagc agaaggcgct tcaggacctc gtgaagaccg tcacggccaa       240
     gcctattatc gcgccaccga agctcaacgc caacaccaac gacaacaagg agttcctgct       300
     cgagtcgttg gcgaacacga tggtcgagtt tcattacgat ccggacagcg atgacggcct       360
     gttcgacgtc tggtactcgc ggtacgcgga cactttctcg caggatgctt gcaagctcga       420
     tgatgccagc aaggtgagac tgttactgcg gaagctggac actcgggcgc acagcagata       480
     cgccaacttc atcctgccga aaaagccgaa ggataacgac ttcgaggagt ccgtgacgaa       540
     gctgaaggag attttttccc gccgaacatc cctgttcaac aagcgctgca agtgcctgca       600
     gttcatcaag ccggagtcga acgacttcat cgcctacgct ggcgcggtga atcgactctg       660
     cgaggacttc aagctgagca gcctgaagga gaacgagttc aaggcgctga tctttgtttg       720
     cggactacgc tcgcaccggg actccgaaat tcgcaccaga ctgctgtcca aactcgagac       780
     ggatgctgct acacttacgg tcgacaccct cgcaaccgaa tgtcagcggc tcctcaacct       840
     gaagcaggac acagcactga tcgagaacgc cgcacactcc tccacttctg ttgtcaactc       900
     tctttctgac aagtatcgtg gcaagtcaaa ccagaaacgg caagacaaac cacaacaaaa       960
     acagaagtca gacgctagga agacgccaaa atccccttgc tggctgtgtg gcggtgtact      1020
     ctacacggag gcctgccctt ttgtaaaaca cgtctgcaaa gagtgtaaac aaatcgggca      1080
     caaagacggc tactgcgcgt tcgcgaggcc gtccgggaaa ccgcagcgtt ccagcgtgaa      1140
     ggaggtctcg agcgaccaga ccagcgcccg tcgcagaagg aagtttgtca gcatcctgat      1200
     caacggtaag ccgatcaagc tccaaatcga cacggcctcg gacatcacgg tgatcagccg      1260
     cgataattgg ttggctcttg gatctcccgc aactcgcccg acaagtcacg aagctactag      1320
     cgcgtctgga ggccacgtca agctggaggc agagttcgag tgcagcgtga cgctgcagga      1380
     ttcctgccgc tcaaccgtct gttacgtcgc acccaacagc aacctgaacc tgctcgggtt      1440
     ggacctgatc gacgctttcg acttgtggtc tgtcccgcta tcttcggtgt gcaaccgggt      1500
     gactgtcgcg gacggcgttc tggatcaagt tcaccagctg cagcgcaagt ttccggaggt      1560
     ctttctggac actctgggcc tctgcacgaa aacgaaggtg aagctgtttc tgaagccgaa      1620
     tcaacagccc gtgtacgtgc cgcgccggcc agtcgcgcag accgcctacg aaccgctgca      1680
     ggacgagctg aggcgtttgg agaacctggg gatcatctcg ttcgtcgagc actccgactg      1740
     ggccgcgccg attgtggctg tacggaaggc gaacggcagc atccggatct gtggagatta      1800
     ctccaccggg ctcaacaacg cgctccagcc gaacgattac ccgctgccag tgccggacga      1860
     catcttcgca tcccttgctg gaatgcgcca tttcagcata attgatctct ccaacgccta      1920
     cttacagatc gaaatggacg aagattcgaa gaacctcctc acggtcaaca cgcaccgggg      1980
     gctcttcaag ttcaaccgtt tggcaccggg cgtgcgtcca gccacgggcg ctttccagaa      2040
     gatcatggac tccatgaccg ctggcctgac cggagttcgc gtctatttgg acgacattct      2100
     ggttggcggg gccactgagg aagagcatct acacaacctg cacgcggtgc tcgagcgcat      2160
     ccgcgactac ggtttccacc tccagctctc caagtgtcgt ttcttcatgg acgagatcaa      2220
     gtacctgggc cacgtggtca acagttcagg tatccgcccc gatccggcca agctccaagc      2280
     gatctccacg atgccgcctc cgaagaacgt tccagagctg cgctcgtacc tcggcgcagt      2340
     gaactactac gcaaagttcg tttcggagat gcaccgtttg cgccatccga tggaccagct      2400
     gctaaaggcc aacgcacagt ggaactggac caaggattgc caacgcgcgt ttgaagaatt      2460
     caagcgcctc ctgtcgtcag atctcctgtt gacgcacttt gatcctcgcc acgagatcat      2520
     cgttgctgcc gacgcgtcca acaccggaat cggtgcctgc ctgatgcatc gcctgccaac      2580
     aggagccatc aaggtcgtgc agcatcgtag ccgttcgctc acccccgaag agaagaacta      2640
     cggacagatc gagaaggaag gtctggcact cgtgttcggt gtcatgaagt ttcactccat      2700
     gatctatggc agacacttta ctctgcagac cgatcacaag tccttctctc aatctcaact      2760
     cgcacaaggg cattcatagc agcatcggcg aagaggatgc agcgttgggc catcatcctg      2820
     taatcgttcg acttgcgtat ggagtacatc gctacggagc agttccctag gcggacgtgc      2880
     tctcgcgtct catcagcaag cacagcagag aaaacgacga agacttcgtg atcgccgcaa      2940
     tctcgttgaa tgacgaactc gaagttttta tcgactcgtc ggtcagcaac ttcccggtca      3000
     cgcacgcctg atccggaagg ctacgaagga gtcgaagtcg ttgcaagcgg tcatcaagta      3060
     ccaccacgaa ggctggcccg agtcttccac gatgatcgct gaacccgaag cgaaactttt      3120
     cttctgccgc cgttttgctc tcagcgtggt cgaaggatgt cttctcctgg gtgagcgcgt      3180
     cgtcgttccg gaagtgtacc gcaagcgcat tcttaagcag ctgcacaaag cgcatcccgg      3240
     aattgtgcgc atgaagtcgc ttgcgcgctg ttacgtgttc tggcctcgaa tcgacgcgga      3300
     catcgaagac cttgtgcgcg cttgcccaaa gtgcgccgct gcagccaagc ttccaaccaa      3360
     ggcaccgctc cagtcctggc cgaccccgaa cggcacttgg gagcgggtcc acatcgatta      3420
     cgctggcccg atgaatggag ttttcttctt cgtcgtagtg gatgcgtact caaagtggcc      3480
     ggagattttc gcaaccccat cgtcttccac caaggcgact atcaagctgc tgcggcagtg      3540
     catcgctcgc tttggtcgta tggaccttct cgtttcggac aacggtccgc agtttacgag      3600
     cgctgagttc cgaacgttcc tgaagcagaa cggaattcag cacgtgacga ccgctccata      3660
     ccatccggcg tccaacggtc aagctgagcg cttcgtcgac acgctgaagc gagctctcaa      3720
     aaagatcaac gagggggagg atttggagga aactttgcaa gtttttcttc aagcgtaccg      3780
     gtcgactgcg aacccgcaag cacccggtgg caaatctcct gcggagctga tgctgagtcg      3840
     tcggcctaaa tcaacattcg atctactacg agctccctcc atgccgccga agcccactcc      3900
     tgcgaacgag aagcagaacg ctgactacga ccggaaacat ggagctgtgg aaaggtgttt      3960
     cgcgcccggt gacctgatct tcgcacacgt gttccgtcgc aacgatttca cgtgggcacc      4020
     agggcaaata atcgagaagg tcggcgcggt gaactacgtc atcaagctcg aaggatccaa      4080
     ccgtccaatc aaggtgcaca ccaaccagat acgacgccgt cgcgtcgcta acgcaacatc      4140
     ggcggaagtt caacctggca cacttccgct ggacatcctg ctggacaact tcgagatcga      4200
     gacgcagcca ctgccgagcg gagattcacc ggttctacct ggagacgatc gacctttccc      4260
     gcgccgttct gaacgagacc gcagagctcc ggatcgctac accccgggac tctgggctta      4320
     aagggggaga                                                             4330
//
ID   Gypsy-26_CQ-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   AAWU01010854;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_CQ_;
KW   Gypsy-26_CQ-I; Gypsy-26_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-239
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 432-432 (2011).
XX
DR   GenBank; AAWU01010854; Positions    2198    1960.
XX
SQ   Sequence 239 BP; 49 A; 59 C; 56 G; 75 T; 0 other;
     tgttgggttc ccacagaacc accagccgtt ccaacaattt cgcgactcgc tgtgctcctt        60
     ggtagcaccc aggtcgagag aggcgcgatc ggagatgcaa ttgtactttt agttttctgc       120
     atatcattac tgttagtcgc tgttacagaa taaacgtgtt ctatttgtta agcttaagtc       180
     tagtttattc ttgcgacttt gtggccgctc gtttggttcg cgcccccggg tacacaaca        239
//
ID   Gypsy-26_DAn-I repbase;    DNA;    INV; 4732 BP.
XX
AC   AAPP01020545;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DAn_;
KW   Gypsy-26_DAn-LTR; Gypsy-26_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4732
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020545; Positions    1943    6674.
XX
CC   Positions [3943-4407] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           536..1507
FT                 /product="Gypsy-26_DAn-I_2p"
FT                 /translation="MANDFTLSFGDILKDAHHIHEYRGDHSRALSSFIREV
FT                 EMILSLLPPTTTAGAYVFRRVILNKIQGGALHVVRTIENSEPSWDDIKRIL
FT                 IRNFGVKESYNQLYQEAFMLSNNNNITEYFKSLRSIMCKVNEKYEYDNVKH
FT                 SEFSPKNVEEAMLRTFLKNIDVNLASVIINRNVKNLREAFDLLETEGLVRT
FT                 QSVKTKFPQSNEKPNKTENQNYHNANNQRDRFYKLNYNNQDQNANHNNNFQ
FT                 NVKANSGNFRSGTQNLNSNQNCTNQQSHISKMEIDHVEVDKTNCSQFKNYN
FT                 QDQSFISESMPEPMNCPCHANFHIVASKNHFP"
FT   CDS           1573..4632
FT                 /product="Gypsy-26_DAn-I_1p"
FT                 /translation="MLDRNKLLQYPRSTLRHPISFSSLNSKSLITQEIVTD
FT                 LPLEFKEDATMSWKLAIFNNKSFDAIIGQNILKPLNAVIDFYHNTITINNN
FT                 IIQFQNSSPYSDEVNQIEPIKIDDKIQKILFNNLNQEENNALNKILSKFKT
FT                 LIFLEGQCLSNTNIIEHQIKTVMDKPVYCKIYRYPQVHEQEIYKQIEEMLH
FT                 QGIIRKSNSPYNAPLWLVPKKADNSGTKKWRIVIDYRKLNENTVDDKFPIP
FT                 NIEGILDKLGRAQYFSTIDLAKGFHQILVQEQDREKTAFSTPHGHYEFNRM
FT                 PFGLKNAPATFQRLINTVLKEEINKICVVYLDDVLIFSTSFSEHVGHIHTI
FT                 FKKLSKANLKIQINKCKFFSKETQFLGHVLTPEGVKPNPEKVNSILQLKIP
FT                 RNIKQIRAFLGITGYYRKFIKDFSQVAYPLIKCLKKDAKIDVNEPNFMIAF
FT                 DKLKRIITEAPVLKYPDFKKKFQLITDASNIALGAVLQQDNHPICYASRTL
FT                 NDHEKNYSSIQKELLAIVWATAYFRPYLYGVKFDILSDHQPLKWLLIKYKG
FT                 KELNEILYRWLVKLSQFNINVSYIKGKDNQVADFLSRISNYEICAVNTAES
FT                 CSSLENNVDDISTQHTQAEDFVDTTILGNLETVVNRFKIQIILTDKKTIEF
FT                 EYKNKNKKIYLNLNDLENRMEEILKHHIIKGKVGIFSEYNDHQYNKFQNKI
FT                 IQIFEGNKNVKFVKCSFHAKDIENEEDVYKEIERFHKYDTGHSGINENYQS
FT                 LKKIIYFPKLQHYIQKYINNCDICNQCKYDRNPVKEKFKYTETPNDIKKIV
FT                 HMDIYTNSKCNFLTFIDRFSKFATAFYLEDRNNQTIIEKMRLYKSQRGNFE
FT                 KLITDNEFNSVNIKEYLRNENIEVHFVKPNSHTGNADVERFHNTLTEKIRI
FT                 IYLENKDLSIKDKVSKAIEYYNNSYHSTIQNTPLNIEYGNCDKQVIRNNIL
FT                 KYKENYITSLNQTRENFEETRNKGYIKNYKSLRHKNEPKYRKFNLSNVHSS
FT                 NIKRKKKYQTSNLT"
XX
SQ   Sequence 4732 BP; 1904 A; 764 C; 706 G; 1358 T; 0 other;
     aaactggcgc agtcgacgga gtaaccgaaa acattaaaaa aatccactta agtgcagtgt        60
     tgagtgaatt ggtgcttgtg ctaatcccac aattatcttg tgaaaaagac acataacctg       120
     aaaaggcacg ttttgtcaaa acatacagac tttgacaaaa agactcgcaa aagtgcgtac       180
     aaaaaaaaaa agagaagaaa aagaccaaca agctgttttt gtgcattgga tatttgctgc       240
     atcccgttca actttgtttt ttagcaaaga ggtatctggt gcacctcttt tttgtgtgca       300
     gcgtgccggc attttgaaac tgtacttata tttgtatgta tgtgtgactg tgtgtataaa       360
     ccaacaattt cacacaccag catctcagag cgaacttatt ctgttcataa gtagttcgat       420
     aacaagttca taagaacgtc tgatatcgat gagcaacgaa aactaacaga actaattctg       480
     ttagaatatt ctaagttcca aagaactcaa cggctattta ttctaactac gaacgatggc       540
     aaacgatttt actttatcgt ttggggatat tcttaaggat gcccaccaca ttcacgagta       600
     cagaggagat cattcaaggg ctctttcatc attcattcgc gaagtggaga tgatattgtc       660
     actattacct cccacaacta ctgcaggagc ctacgtgttt cgccgtgtca tactcaacaa       720
     aatccaaggc ggagccctac atgttgtgag aaccatcgag aactccgagc cgtcgtggga       780
     tgacatcaag aggattctta ttcggaattt tggcgtaaaa gagtcctata atcaacttta       840
     ccaagaagca tttatgctaa gtaacaacaa caatattaca gaatatttta agtctttaag       900
     aagtataatg tgtaaagtta atgaaaaata tgaatatgat aacgtaaaac attctgagtt       960
     tagtcccaaa aatgttgaag aagctatgct aagaacattc ttgaaaaata ttgacgtaaa      1020
     tttagcttca gttataatta atagaaatgt aaaaaattta agagaagctt tcgatttatt      1080
     ggaaaccgaa ggtcttgtta gaactcaaag tgttaaaaca aaatttcctc aaagtaacga      1140
     aaaaccgaac aaaacggaaa atcaaaacta tcataatgca aataatcaaa gagaccgatt      1200
     ttacaaacta aattataata atcaagatca gaatgcaaac cacaacaaca atttccaaaa      1260
     tgtaaaagct aattcaggga actttcgatc aggaacacaa aatttaaatt caaatcaaaa      1320
     ctgtacaaat caacaaagcc atatttcaaa aatggaaatc gatcatgtcg aggtagataa      1380
     aactaattgt agccaattta aaaactataa tcaagatcaa agcttcattt ctgaatcaat      1440
     gccagaacca atgaactgtc cttgtcatgc aaattttcat atagttgcct cgaaaaatca      1500
     cttcccttga ttaacttaac tataaacaat gaaataatca cagccttgat tgatactggt      1560
     tcaacaactt ccatgttaga tagaaataaa ttgttacaat atcctcgaag tactttgcgt      1620
     catccaatat cattttcatc tctaaattca aaatcgctaa taacgcaaga aattgtaact      1680
     gatttacctc ttgaatttaa agaagatgcc acaatgagtt ggaaattggc catatttaat      1740
     aacaaatcgt tcgatgctat aataggtcaa aatattctca agccattaaa tgctgtaatt      1800
     gatttttatc acaatacaat tacaattaat aataatatta tccaatttca aaatagttca      1860
     ccatactctg atgaggtaaa tcaaattgaa ccaataaaaa tagatgataa aatacaaaaa      1920
     attcttttca ataatttaaa tcaagaagaa aacaatgctc taaataaaat tttaagtaaa      1980
     tttaaaacat taatatttct tgaaggtcag tgtcttagca atacaaacat tatcgagcat      2040
     cagataaaaa cagtaatgga taaacccgta tattgtaaga tttatagata tcctcaagta      2100
     catgagcaag aaatttataa gcaaattgaa gaaatgctac atcagggcat tatacgtaaa      2160
     agcaattctc catataatgc ccctctatgg cttgtcccaa aaaaagctga taatagtgga      2220
     acaaaaaagt ggcgtatagt tattgattat cgcaaattga acgaaaacac agtagatgat      2280
     aagtttccta tcccaaatat agaaggtata ttggataagt taggaagagc gcaatatttt      2340
     tctactatag atctcgcgaa aggctttcac caaattcttg ttcaggaaca agacagggaa      2400
     aagacagcat tttctactcc tcacgggcat tatgagttta atcggatgcc attcggactc      2460
     aaaaacgccc ctgccacatt tcaacgcctc ataaacacag tcttaaaaga agaaataaat      2520
     aaaatttgtg tggtctatct tgacgacgtt cttatttttt ctactagttt ttcagaacat      2580
     gttggccaca ttcatacaat ttttaaaaaa ctctctaaag caaatcttaa gattcaaatt      2640
     aataaatgca aattcttttc aaaagaaact cagtttttgg gccatgtttt aacccccgaa      2700
     ggagttaagc ctaacccaga aaaagttaac agcattcttc agcttaaaat tccgagaaat      2760
     attaaacaaa ttagagcttt tctaggaata actgggtact atagaaagtt cataaaggat      2820
     ttctcgcaag tagcttatcc attaattaaa tgccttaaaa aggacgccaa aatagatgtc      2880
     aatgaaccca acttcatgat tgcatttgac aaattaaaaa gaatcataac tgaggcaccg      2940
     gtacttaagt atccggattt caaaaagaaa tttcagctta ttactgatgc tagtaatata      3000
     gctttaggtg cggttttgca acaagataat catcctattt gctatgcaag tcgcacattg      3060
     aatgaccatg agaaaaacta ctcttctata caaaaggaat tactagctat agtgtgggca      3120
     acagcttatt tccgcccata tctctatgga gttaaattcg atattttatc cgaccaccaa      3180
     ccacttaagt ggctgctaat taaatataaa ggaaaagaac ttaatgaaat actttataga      3240
     tggcttgtta agctcagcca atttaatata aacgtatcat acattaaagg aaaagataat      3300
     caggtagctg attttttaag tcgaataagt aactacgaaa tttgtgccgt aaacacagct      3360
     gaatcgtgta gctctttaga aaacaatgtt gatgatatta gtacacaaca tacacaagct      3420
     gaagactttg tggacacaac tattttaggt aatttagaaa cggttgttaa tagatttaaa      3480
     atacaaatca ttctaacaga taaaaaaacc attgaatttg aatataaaaa taaaaataag      3540
     aaaatttatt taaatttaaa tgatctcgaa aatagaatgg aagaaatttt gaagcatcat      3600
     atcataaaag gcaaagtagg aatattcagt gaatataacg atcatcaata caataaattt      3660
     caaaacaaaa ttatccaaat ttttgaaggt aataaaaatg taaaatttgt aaaatgctca      3720
     tttcatgcaa aagacattga aaacgaagaa gatgtgtaca aagaaattga aagattccac      3780
     aaatatgata ctggtcattc aggtataaat gaaaattatc aaagcttaaa aaagattatt      3840
     tactttccaa aacttcaaca ttacatccaa aagtatatca acaattgtga tatttgtaat      3900
     caatgtaaat atgataggaa cccagtaaaa gaaaaattta aatatacaga aacaccaaac      3960
     gatataaaaa aaattgttca tatggatatc tatacaaatt caaaatgtaa ttttctaact      4020
     tttattgacc gattttcaaa atttgctact gcattctacc ttgaggatcg caataaccaa      4080
     actataatcg aaaaaatgcg cttgtacaaa tcccaaagag gaaattttga aaaactaata      4140
     actgataatg aatttaatag tgtaaatata aaagaatatt taagaaatga aaatatagaa      4200
     gttcattttg tgaaaccgaa cagtcacact ggcaatgcag acgttgaaag attccacaac      4260
     acgttaacag aaaagataag aataatatac ctcgaaaata aagatctatc aatcaaagat      4320
     aaagttagta aagctataga atattataat aacagctatc actcaacaat acaaaacacg      4380
     ccactgaata ttgaatatgg aaattgtgac aaacaagtta tacgtaacaa cattctaaaa      4440
     tataaggaaa attacattac atctttaaac caaaccagag aaaattttga agaaactaga      4500
     aataagggat atataaaaaa ctataaatct ctaagacaca aaaatgaacc gaaatatagg      4560
     aaatttaatt taagcaatgt acatagctcc aatataaaaa gaaagaagaa atatcagact      4620
     tcaaatttaa cgtaatctac tataattgta ttcctaacac ttatgtatgt atatttttca      4680
     taaccaaatt gtaaaactca ggagagtctt aatttaagcg atggggaagt ta              4732
//
ID   Gypsy-26_DAn-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   AAPP01020545;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DAn_;
KW   Gypsy-26_DAn-LTR; Gypsy-26_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-213
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01020545; Positions    1730    1942.
XX
SQ   Sequence 213 BP; 87 A; 34 C; 36 G; 56 T; 0 other;
     tgtagtcgaa gcttccattc tcttcgttta catttaacaa gagagagaga gagatcacaa        60
     gctctctcga cttcaaagaa ggtacaagaa aaagcttttg agctgacttg gtgagcagaa       120
     gcgaacaaga acacatcgta aagaaataaa cagaagttac aaaattaaaa acattaattt       180
     tatttatcta aagttaacat aactatgtta aca                                    213
//
ID   Gypsy-26_DBp-I repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DBp-I.
XX
NM   Gypsy-26_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4284
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 695-695 (2012).
XX
RN   [2]
RP   1-4284
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Fragment. The insertion of
CC   Mariner-2_DBp-like sequence (~94% identical to the consensus
CC   1-745, complementary) is masked with x.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2]: termini determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           781..3276
FT                 /product="Gypsy-26_DBp-I_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="QSPRHSKKPXFRVESSSLPYFQCKIXNGEXIXISIDT
FT                 GSNKNYIQPRRVKKPIKNNKSFYVSSIAGDVQITHHTIANPFDLKDTYVKF
FT                 FLLPSLQSFDTIIENDSLREINAQINLQEGYILIKNKRRIKIKQKASPEVN
FT                 KLDIRIEHTTETQKENLKIVCLKFPNLFGDPDEKLTYTTKVEATIRITKES
FT                 PIYSRHYPYPEALRPEVEKQISTRKRRNKTFKSPYNSPIWIVPKKMDASGQ
FT                 KKHRMVIDYRKLNLVTIPDRYPIPDINNVLAQLGQNKFFSVLDLKSGFHQI
FT                 PLRQSDIEKTAFSVNQGKYEFTRLPFGLKNAPSIFQRALDDILRDHIGVRC
FT                 FVYIDDIIIFSKSEENHINDIEIIFKILEDANMRIQLDKCEFFKKEVEFLG
FT                 FLVADTGIKKNPEKVRAIVEFPEPKTLKDLRSFLGLSGFYRRFIKDYAKLA
FT                 KPLTALLRGEEGRGRISKNASSKTLIELDEDAREAFGKLKQTLASEEVMLS
FT                 YPDYNKEFQLTTDASDYAIGAVLAQEDKPIMFISRTLSKAEESYAPNKKEM
FT                 LAIIWSIQTLRNFLYGPTKVKIFTDHESLTHPTNPKSRNDQMKRWKAILEE
FT                 YNHELIHKPGKANVVADALSRPPIQTRGEVNTLTGTIHSSSSSPERLIPMA
FT                 EEPVNVFKNQILLYLGKTPSYKFELVFPTYHRHIITEPIFNAEILLKILKD
FT                 RLNPSVINGIHTDEKTLGQLQEIYPLFKNYKTRFSSRLVRDLKDETDQENA
FT                 IITEHRRAHRNSNENKQQLLNKVYFPQMRAKIIKILKECQICKEQKYERHP
FT                 NKPELQKHQYHNTQVKLFTSIFTLLANKLF"
FT   CDS           3329..4189
FT                 /product="Gypsy-26_DBp-I_2p"
FT                 /note="envelope protein."
FT                 /translation="MLKEEIVNLNHATEWAKADISNTQILGDEEVNEVIKT
FT                 LDQDQLPYTNFEEAMKIAEVSVASNGPTLIYIIKIPITDTNLCEEILIKPI
FT                 KIGEYVNKIQNENVIRCKGKLFAKISKCNNYNELTICKHRNMIDISNSSCL
FT                 PNLLKSRPATCTQINNQHIPIIDELAPGAILLNKFSGNVEINGTSTSLNGT
FT                 FVINFSNSTINIDGQTFTNKDTVHYHPMPAILQTEMTIRKIEEKLSLELIK
FT                 ELSINNTKTLELLKTTSQPMYVTTYSRFFNVHNNHGTCSNSNSLLD"
XX
SQ   Sequence 4284 BP; 1677 A; 887 C; 698 G; 1017 T; 5 other;
     ggcgcccaac gtttaagggt cctgtccgcg gaaatatcct tggtatcgaa tcaaagtaac        60
     actcgtaagt gcaccccata ggctgcccgg gttccaccga tccgaaatat aagtcgcgaa       120
     tccaaaaacc acctgcaagt gcaccccata ggctgccctg gtaacaccgg aaaaaaaggc       180
     gcaccaaagg aaaggcaaca ctgctggacg acccgccaag aaaaggactc acttacatca       240
     gactgcaggc tatcgccgta gacaactgga cgggagtgtc aggaaaaggt accccggcag       300
     tagcaaggag caaaaaggac tactaccaac tggccggttc aggatgtatt ttatcttact       360
     gtaagctaac ttttaattac aaaccacaaa caaaacaaga aatcacaaaa gtgaaacata       420
     cccaaaagaa attttttaaa caaaaattaa aaagctaagc aaggcaaaca aacacacaaa       480
     gcaaacccaa taaaaaataa cctaagaatt tatattttac gcacaaccct acacaccttt       540
     acacatacaa aaaatatttt taagttacaa aaatggctaa tccaaataat ctgattaggc       600
     ccgcgatgct caacaataat ggagtccctg aagtaaacca agtcccagca aacttagcta       660
     aatgcaagcc caaatgcaag aaatagtaga gagaatttta aatcaaaaat taaacccaga       720
     ttcagtgccg ctactcgatc aaacctataa tgctaatgca aacaatgtga gtgaatttga       780
     cagagtccca gacatagtaa aaagcctttk tttagagtag aatcctcttc attaccttac       840
     tttcaatgta aaatcgstaa tggagagats atcaamattt caatagatac cggctctaat       900
     aaaaattaca ttcaaccgcg acgagtaaaa aaaccaatca aaaataataa atctttttat       960
     gtaagctcca tagccggaga tgttcaaatc acacaccaca caattgccaa cccatttgat      1020
     ttaaaagata catatgttaa attcttttta ctaccctcgt tacaatcatt cgatactatt      1080
     atagaaaacg attcacttcg cgaaatcaac gctcaaataa atttgcagga aggttatatt      1140
     ttaattaaaa acaaacgtag gatcaaaata aaacagaaag cttcacccga agtcaacaaa      1200
     ttagatattc gaatagaaca tacaacagaa acgcaaaagg aaaatttaaa aattgtttgc      1260
     ctaaaatttc caaatttatt tggcgaccca gacgagaaac tgacatacac taccaaagta      1320
     gaagctacta taagaattac gaaagaaagt ccaatatact cgaggcacta cccataccca      1380
     gaagctctta ggccagaagt tgagaagcaa ataagtactc gaaaacggcg taataagacg      1440
     ttcaaatccc cgtataattc tccaatatgg attgtaccga aaaaaatgga tgcctccgga      1500
     cagaaaaagc atagaatggt aatcgactat aggaagctta acttggtcac aattccagac      1560
     agatacccta taccagacat taacaatgta ctggcacagt taggacaaaa taaatttttt      1620
     tctgttttag accttaaaag tggatttcac caaatcccac tcagacaatc agacatagaa      1680
     aaaactgcat tttcagtaaa tcaaggcaaa tatgagttta ccagactccc gtttggactc      1740
     aaaaatgccc cttctatttt ccaacgagcg ctagatgaca ttcttagaga tcatatagga      1800
     gttaggtgtt tcgtctacat tgacgacatt attatcttca gtaaaagcga agaaaatcat      1860
     ataaatgaca tagaaattat attcaaaatt cttgaggacg caaacatgag aattcagtta      1920
     gataaatgcg aattttttaa gaaagaagtt gaattcttag gatttttagt agcagatacc      1980
     ggaattaaga aaaacccgga aaaagtgaga gcaatcgtcg aattccccga accaaagaca      2040
     cttaaagatc ttcgttcctt tttaggactg tcagggttct accgtcgctt cattaaagat      2100
     tatgcaaagc ttgcaaagcc cctaacagcc cttttaagag gggaagaggg ccgaggccgt      2160
     atctcaaaaa atgcctcaag caaaacacta atcgaacttg acgaagacgc aagggaagca      2220
     ttcggaaaat taaaacaaac tctcgcctcc gaagaggtaa tgttatcata tccagactac      2280
     aataaagaat ttcaattaac taccgatgct tcagactatg ctattggtgc cgtattggcc      2340
     caagaagaca aacctataat gtttatttct agaactctaa gtaaagcaga agaaagctat      2400
     gctcctaaca aaaaggagat gctagctata atctggtcaa ttcagactct tagaaatttt      2460
     ctgtacggtc cgactaaagt gaaaatattc acagaccatg aatctctcac acacccaact      2520
     aacccgaaaa gccgtaacga ccagatgaag agatggaaag ctattctaga ggagtacaac      2580
     catgaactaa tccacaaacc cggcaaggca aacgttgttg ccgatgctct gagtagacct      2640
     cccattcaaa cgcgagggga agtaaacaca ttaacaggca ctattcacag cagctctagt      2700
     tctcctgaaa gactaatacc aatggcagaa gaaccagtaa atgtttttaa aaatcaaatt      2760
     ctattatatt taggaaagac accctcctat aaattcgaac ttgtttttcc cacataccat      2820
     agacacatta ttacagaacc aatctttaat gcagaaatcc tattaaaaat tttaaaggat      2880
     agactcaacc cgtctgtcat taacggtatt catacagacg aaaaaacttt aggtcaactt      2940
     caagaaatct acccactttt caaaaattat aaaaccagat tctcaagcag actagttagg      3000
     gatttaaaag acgaaactga tcaggaaaat gcaattataa cagagcatag aagagcacat      3060
     agaaatagca atgaaaacaa acaacaatta ctaaacaaag tttactttcc tcagatgagg      3120
     gctaaaataa taaaaattct aaaagaatgc caaatttgta aagaacagaa atacgaaaga      3180
     caccccaaca aaccagagtt acaaaaacac caataccaca atacccaggt caaattattc      3240
     acgtcgattt ttaccttact tgcaaacaag ttgttttgac tgcaatagat aaattttcaa      3300
     aatttgcaca agccaggata gtcataaaat gcttaaagaa gaaatcgtta accttaacca      3360
     cgcaacagaa tgggcgaaag cagatattag taacacacag atattaggag atgaagaggt      3420
     aaatgaagtt ataaaaactt tagatcaaga ccagttacca tacactaatt ttgaagaagc      3480
     catgaaaata gcagaagtaa gcgtagcaag caatgggcca acacttattt acattattaa      3540
     gattcccata accgacacca acctttgtga agaaatttta atcaaaccaa taaaaattgg      3600
     tgaatatgtt aacaaaatcc aaaacgaaaa tgtaatcaga tgtaaaggaa aactttttgc      3660
     aaaaatttca aaatgtaata attataatga actaacaatt tgtaaacata gaaatatgat      3720
     agacataagt aattcttctt gcctaccaaa tttattaaaa agtcgccctg ccacctgcac      3780
     tcaaatcaac aaccaacaca ttccaattat tgatgaactc gcacctggtg caattctact      3840
     caacaaattc tctggcaacg tagaaataaa tgggacatcc acaagtctca acggaacctt      3900
     cgttatcaac ttcagcaatt ctacaattaa tattgatgga cagaccttca ccaacaaaga      3960
     cacggtgcac tatcacccga tgccagccat tctccaaaca gagatgacca ttcgaaagat      4020
     agaagagaag ctatcactgg aattgatcaa agagctaagc atcaacaata cgaaaacctt      4080
     ggaactcttg aaaaccacat cgcagccgat gtatgtaacc acatacagcc gattttttaa      4140
     tgtccataat aatcacggga cttgcagcaa tagcaactcg cttcttgatt aaaagggtca      4200
     aagtactgca catcaacaaa gtagcttccg ataacgagat caatgacggc aacgagcgtg      4260
     gacacasgat ttaaaaggtg gagg                                             4284
//
ID   Gypsy-26_DBp-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   04-JUN-2019 (Rel. 24.06, Created)
DT   04-JUN-2019 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-320
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 19(6), 1061-1061 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 320 BP; 106 A; 73 C; 64 G; 77 T; 0 other;
     agttaacaca aaacgaattc gcaaccgaag ttggccacgc gcatccggca ttgcagcagc        60
     aagcaaaagt gcaagggcaa tttcccggct tcggtcaata gctcccaaaa ggtgctgact       120
     gcagcgtctg atccacttcc cgctgcagcg aagacaacgg caaagctccg acgttggcag       180
     aggcagcgac aaagctattg ggtataaata tgccaatttt tgtaaacata atttagttcc       240
     aatttttgta ctaataaata cggaccaagt gtccaacaaa attatatttt tttaaaaata       300
     ataaacccaa gtgtttaact                                                   320
//
ID   Gypsy-26_DEl-I repbase;    DNA;    INV; 7357 BP.
XX
AC   .
XX
DT   20-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Putative LTR retrotransposon from the Drosophila elegans genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DEl-I.
XX
NM   Gypsy-26_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7357
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 464-464 (2012).
XX
RN   [2]
RP   1-7357
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated. ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1072..2232
FT                 /product="Gypsy-26_DEl-I_1p"
FT                 /translation="MSKISKVKESLRPLTRSKVIKKATSLPTIVEQLNFEP
FT                 STSRAVQNREANTMTHQDNLGMQQATFEMLGTVKISDVIRSMHVFMGEKER
FT                 INEFILNAEEILLMIRGMDQTPMGLMILRQIRNKIQGKADDILVKSNCGLN
FT                 WDVIKRILIAHFADKRSEPDLLRELNQLENKKLTVELFYSEVSDVHKALCN
FT                 VTDRTDTDPIAIQAKKKLYEETCLEAFVTGLKGNLGSAVRGRVPKTLLEAY
FT                 EIAVKERDIYYRSKEVPRSNNFSMAGGYNRQNFGYNRNRGYNNNFNRDNEG
FT                 YRQQGGYNRNPRWNKEGIRNRGYDNQSTSNSSGYNKKAIMPKQEIAECSST
FT                 GPRGAKRWQSGQLNTVEREEEQELNNIEDEGNFCQNASKNRQGI"
FT   CDS           2184..5753
FT                 /product="Gypsy-26_DEl-I_2p"
FT                 /translation="GRGKFLPECLKKQTGYIRKNTHQATLPYVVVKVNNEK
FT                 KLKLLIDSGATNSYLNPAMVSKDQQQKLKENLVVKTPIGSHKINSYIKDVE
FT                 LQEIAKGELFDFFLFHFHSWFDGLLGMDILIKLGASLDLENLVLRTKTGTV
FT                 KVHLKPNRTTDIHILEEATKTIVTLPVSVNNGSFLIQTTLVEEGLEITGGI
FT                 YYAKKGQADLEVVNFTGKEKKLYLEKPLAVTAYDSKDYVEIEMLRPFKQEY
FT                 VCREMNTTELAGGDASHAKLDMSHLNTEEAASLKKLCSEFPSIFHTKGNQL
FT                 TFTNAVTHSIPTTDDIPIYKKPYRYGFKQREEMKNQIQELLEQEVIRHSHS
FT                 PWSAPVWLVPKKMDLSGKQKWRLVVDFRKLNEKTVKDRYPMPVIGEVLDKL
FT                 GKAMYFSVLDLASGYHQIEMEKQDIPKTAFTTDNGHFEYVRMPFGLTNAPA
FT                 TFQRVMNNLMGELVGKICLVYMDDIIVYSPSLQSHMQDLRTVFKRISGANF
FT                 KLQTDKSEFLKKEIEYLGHVVTQEGVRPNPKKIEAIKLFPLPKTPKEIKSF
FT                 LGLIGYYRKFIKDFAKITKPLTKRLKGKQQIIIDEEYTKTFEYCKTLLCND
FT                 PLLRYPDFTKPFILTTDASNFAIGAVLSQGAMGSDRPIAFASRTLNEAEVN
FT                 YSTVEKEMLAIVWGIKHFRPYLFGHKFTIVTDHRPLTWLMGFKEPNSKLVR
FT                 WKLQLLEYDYEVTYKKGSQNVVADALSRIELQVHNSELESTQATCAAHTSE
FT                 LELSCIHVAEKPLNDFNIQLIFEVGSTPSRTVVTPFKNKTRRTITEKEFTK
FT                 EEIAKILREVLKPYRLCAIYTSDEVFKKVEEAFQSYFCRSKLYKAVRCLTF
FT                 MREITDISEQREEIERYHTSGNHRGIDETFWKMRRDIYFPFMKNRVTQVIN
FT                 ACETCQTLKYDRQPQKVVFQNTETPCKPLDIIHTDLYTINKNYVITIIDKF
FT                 SRFAVGYTIPARDSLNIVKSIKKFIGQYGVPKKIICDQGAEYASALFKDFC
FT                 RQYGIELHVTSFQQSSSNSPVERLHSTLTEIYRIIMKTRKDLKLENEHEEV
FT                 LDEVFLTYNNSIHSSTKLKPFELFSGRTHVFEREINFDTEHEYLRKLNAYQ
FT                 EEIYKEVKNRLERQKQERTRKLNEGREEPMELEKEDVVYRKENRRNKLTPR
FT                 FTEHTVDEDNGVTFVTKKKQKIHKSKIKKEN"
FT   CDS           5814..7355
FT                 /product="Gypsy-26_DEl-I_3p"
FT                 /translation="MEVKALKREEAIVKMELGKARVMVGAKMFDHIINFKD
FT                 YEGNIAQIENALLDMEKVRFSGEAVQVVKEKLYQVKEKLEVLKPRNRVKRG
FT                 IFNGLGSMIKIVSGNMDAYDEEKIGNRIKELRNETRFLTKEADEQRTFYQE
FT                 TLSRFTKITKHINKEQEDINLFIKNYKNNVFRELTQEHNEIHMLQHLNRIS
FT                 YSIDLLTVHLNNIAESILLAKLRIVPKFILAETELERIIQFVESQGLKIVS
FT                 NEQVYELINIQTQINETDIIFRVRAPIFEPNVYQLYHVIPIPINGTHLLII
FT                 PNYVAINKYKISFFNNQCSKVHETFICESEELGVETKGKECLRKILTNKPP
FT                 ICDSVNLEGREMVLAPEDGHIFIFNALNLPVNNTCGEDITISGALAIKYAN
FT                 CSIEINGIKYDGQVMEHKEDHIVLTTTISKQILINNTKQELNLEVLHLEDM
FT                 RNLKKVVYMGKVQETHFSVIYGMLVLLAITVLAIWRIRKTKTIFTPNAFLH
FT                 NVALDIPQMWPSLHSRGG"
XX
SQ   Sequence 7357 BP; 2867 A; 1121 C; 1597 G; 1772 T; 0 other;
     ggcgcagccg gacctatcag ccggaaggag aaaaaaagga cacacatacc cggagaactg        60
     agaaggaccg aaatgatgaa aacaattatt tgtataattt atatacaaca gtaagttaaa       120
     atagtgatgt gatgggagtg aggtgtgtgg tgtaaataaa aaaagaaagg gtgcacagat       180
     ataataatga taaaattgaa aggcataaaa tgaaacaaca acaaagaaca ttggcaagaa       240
     taaattaaat caaataatgt ggtgcgacgc aacctggcga cctgcaacgt catcgaacca       300
     tttagttcga cggattgagt tgcaagtaag acgttcgaaa gttcgatgtt ggacgcgaac       360
     atcaaacatg cagcttggga aaagaaaccc aggtcgctgg gtggatactc tgcctgtcaa       420
     taaataaaca gattataaaa gaaatatcta ttgcaagtga ctgtccgctc gtggctggaa       480
     taaatgcatc gcgcaggatt tccagttagc ttcagcaccg tgaaaaaaaa aaaaaaatag       540
     taaacagaca aggaaatccc aaagaccact gcatcgcgca agggtatttg gtgaatctca       600
     aagttaaata taataaatta taacacctac aagaagaaat tttgccatat cagaaaccac       660
     tgcatcgcgc aagggtgacg attatgcaat aataatagaa tatatatata tgttacaaaa       720
     atacaaggga acctgatacc actgcatcgc gcaagggtat agaagggtga aaagaaaatt       780
     aaaaaaaaaa taaaagaaac acatacacaa cacttccaac acagtacaaa aattttttag       840
     taataaaaca attgaacaaa tgataataac aaaattttac agataaaaga caccgacaca       900
     cacctcactt ctaaggaaaa ggaattatta aagacacatc aggaaaaagc taagaaaata       960
     cataatacaa tatatacata tatatcaaga tacacatata ctatataata agcacaagca      1020
     aagaaaaaaa aaataataat agttgaaaga gtaaacaaaa gagaattgta aatgtcaaaa      1080
     attagcaaag tcaaagagtc acttagacct ctgactagaa gtaaagttat aaaaaaggct      1140
     accagtttgc caacgatagt tgaacagtta aattttgagc cctcaacttc tagagcagtg      1200
     cagaacaggg aagctaatac aatgacgcat caggacaatt taggaatgca acaggcaaca      1260
     tttgagatgt taggtactgt gaaaatttcc gacgtgatcc ggtcgatgca tgtttttatg      1320
     ggggaaaaag aaaggataaa cgagttcatc ttaaacgcag aggagatcct tttaatgatt      1380
     agagggatgg atcaaacacc tatgggacta atgatcctta ggcaaataag gaataaaatc      1440
     caaggaaagg ccgatgacat tttggtaaaa tcaaattgtg gattaaattg ggatgtaatt      1500
     aaaagaattt tgatagccca ttttgcagac aagaggtcag aacctgattt actgagggaa      1560
     ttaaaccagt tggaaaataa aaaactaaca gtagaattat tttactcaga ggtatctgat      1620
     gtacataagg cattgtgtaa tgttacggac aggacagata cggaccccat cgcaattcag      1680
     gcgaagaaaa agttatatga ggaaacgtgt ctggaggcgt tcgtaacagg tcttaaaggc      1740
     aatttaggta gtgccgtgag gggaagagtt ccgaagacgc tcttggaagc atacgagata      1800
     gcggttaagg agagagacat ttattaccgg tctaaagagg tacccaggag caataatttt      1860
     agtatggcag ggggttataa caggcagaac tttgggtata atagaaacag aggatacaat      1920
     aacaacttta acagagataa tgaaggatat aggcaacaag gaggatataa caggaacccc      1980
     aggtggaata aggaaggaat taggaataga ggatatgaca atcagtcgac ctctaactct      2040
     tcagggtata ataagaaggc aataatgcca aaacaagaaa ttgcagaatg ctcatcaact      2100
     gggcctagag gtgccaaacg atggcagtca gggcaattaa atacagtaga aagagaagag      2160
     gagcaggagt tgaataacat tgaggacgag ggaaattttt gccagaatgc ctcaaaaaac      2220
     agacagggta tataaggaag aatacccatc aggcgacatt accatacgtg gtagttaaag      2280
     taaataacga aaaaaaacta aaattattaa tagattcggg agctacaaat tcgtatttaa      2340
     atcccgcaat ggttagtaaa gatcaacagc aaaaattgaa agaaaacctt gtagttaaaa      2400
     ctccaatagg gagtcataaa ataaacagtt atataaaaga tgtcgagctg caggaaattg      2460
     caaaagggga attgtttgat ttctttttat tccattttca ttcctggttt gatggattat      2520
     tgggaatgga catattaatt aagttaggtg caagtttaga tttagaaaat ctcgtattaa      2580
     gaaccaagac agggacagtt aaagtccatt tgaagcccaa taggaccact gacatacata      2640
     tcctggagga ggcgactaaa acaattgtca ccttaccagt ttcagtaaac aatggttcat      2700
     ttttgataca aacgacacta gtggaagaag ggttagaaat aaccggtgga atttattatg      2760
     caaagaaggg acaggccgac ctagaagttg tcaatttcac aggaaaagaa aagaaattat      2820
     acctagaaaa gccgttggct gtcactgcat atgattccaa agattatgta gaaatcgaaa      2880
     tgctaagacc atttaaacag gagtatgtat gcagggaaat gaacacaacg gaattagctg      2940
     ggggtgatgc aagccatgca aaattggata tgtcccatct aaatacagaa gaggcggcaa      3000
     gccttaaaaa actgtgttcg gaatttccaa gtatttttca cacaaaggga aatcaactga      3060
     catttaccaa tgcggtaact cactcaattc caacaacgga cgatattcct atctataaaa      3120
     agccatatag gtatggattt aaacaaagag aagaaatgaa gaatcagata caggaattgt      3180
     tagaacagga agttattagg cacagtcact caccttggag tgcaccagtt tggctagtac      3240
     caaagaagat ggacctgtca ggaaaacaaa agtggagact ggtggtagat tttaggaagt      3300
     tgaatgagaa gacagtgaag gataggtatc cgatgccagt aattggcgaa gtactcgata      3360
     aattgggaaa agccatgtat ttctcggtat tagatttggc tagcggatac catcagattg      3420
     agatggaaaa acaggacatt ccaaaaacag catttacaac ggataacggg cattttgaat      3480
     atgtaaggat gccatttgga ctgacaaatg ctccagcgac gtttcaaaga gtgatgaata      3540
     acctgatggg agagttggtg ggcaagattt gtctagtcta catggatgac ataattgtgt      3600
     attccccgtc cctacaaagt cacatgcaag atttgaggac agtttttaaa aggataagtg      3660
     gagcaaattt taaacttcaa acagacaaat cagaattttt aaagaaggag atagagtatt      3720
     tagggcatgt agtgacacaa gaaggagtca gaccaaaccc aaagaagatt gaagccataa      3780
     agctttttcc tttgcccaaa acaccaaagg aaataaagtc atttcttgga cttattggct      3840
     attacaggaa attcataaaa gattttgcaa aaataacgaa accattaact aagagactaa      3900
     aaggaaaaca acagataatc atagatgagg agtatacaaa aacttttgaa tattgcaaga      3960
     cgttgttatg caatgatcca ttgttgagat atccagattt tacaaaaccc ttcattttga      4020
     ccacagatgc tagcaatttt gctattggtg cagtgttatc acaaggagca atgggaagtg      4080
     atcgaccaat cgcatttgca agcagaacgt taaatgaggc tgaagtaaat tattccacag      4140
     tagaaaagga aatgcttgcc atagtttggg gcataaaaca cttcagaccg tacttgtttg      4200
     gtcacaaatt cacaatagtc acagatcatc gcccactaac ttggctcatg ggatttaaag      4260
     aaccaaattc caagttggtg aggtggaagc tgcaactgtt ggaatatgac tacgaggtga      4320
     cctacaaaaa ggggtcacaa aacgtcgtgg cagacgcctt gagcagaatt gaactacaag      4380
     ttcacaacag tgaattagag tcaacccagg ctacttgtgc ggcccataca agtgaactgg      4440
     aattaagttg cattcatgtg gcagaaaagc cactgaatga ctttaatatc cagttaatat      4500
     ttgaggttgg gtcgacacca agcagaacag tggtgacacc ttttaagaac aagacaagaa      4560
     ggacgataac agaaaaggag ttcacaaaag aggaaattgc aaaaattctt agggaggtgc      4620
     ttaaaccata caggttgtgt gcgatataca cgtcagatga agtttttaaa aaggtagaag      4680
     aagcgtttca gagttatttt tgcaggagca aactgtataa agcagtacga tgtcttacct      4740
     tcatgcggga aataacagat attagtgaac aaagagaaga aatagaaagg tatcacacct      4800
     caggtaatca taggggaata gatgaaacgt tttggaagat gagacgggac atttattttc      4860
     catttatgaa aaaccgagta acacaggtca ttaatgcgtg tgaaacttgc cagacattga      4920
     aatatgatcg gcaaccgcaa aaggtggtat ttcaaaatac ggaaaccccg tgcaagccac      4980
     ttgatatcat tcatacggac ttatatacaa tcaacaaaaa ctatgtaata acaataatag      5040
     acaagttttc aaggtttgcc gtgggataca ctataccggc aagggacagt ttaaatattg      5100
     ttaaatcaat aaagaagttc ataggtcagt acggcgttcc taaaaagatc atatgtgacc      5160
     aaggcgcaga gtatgcctcg gcactattca aggatttctg taggcagtac ggaattgaat      5220
     tgcatgtgac gtcatttcaa caatcgtcca gcaattcacc ggttgaaagg cttcattcaa      5280
     cactgacaga aatttatagg ataattatga aaacaaggaa ggacttaaaa ctagaaaatg      5340
     agcatgagga agttttagat gaagttttcc taacttataa taactcaata cactccagta      5400
     cgaaattgaa gccgttcgaa ttgttctcgg ggagaacaca cgtttttgaa cgggaaatta      5460
     atttcgatac agagcacgag tacttaagga agttaaatgc atatcaggag gaaatttata      5520
     aggaagttaa gaacaggttg gaaagacaaa aacaggaaag gacgcgaaaa ctcaatgaag      5580
     gaagagaaga acccatggag ttagaaaaag aggatgtagt ttataggaag gagaatagaa      5640
     gaaataagtt aacacctagg tttacggaac acacagtaga tgaggataat ggggttacat      5700
     tcgttacaaa aaagaaacag aagatacata aatcaaaaat taaaaaagag aattaaacaa      5760
     aataaaaact aatcaatcac ggttacaggt gcatattagt ccatggacag acaatggagg      5820
     tgaaagcact aaaacgagaa gaggcgatcg taaaaatgga actgggaaag gcaagagtaa      5880
     tggtcggagc gaagatgttt gaccatataa taaactttaa ggactatgaa ggtaatattg      5940
     cacagattga gaacgcgttg ttagacatgg agaaggttag attctcaggt gaggcagtcc      6000
     aggtggttaa ggaaaaattg tatcaggtga aggagaagct agaagtactt aaaccaagaa      6060
     atagggtcaa aagaggaatt tttaatggat tagggagcat gataaaaata gtttcgggaa      6120
     atatggacgc atatgatgag gagaaaatag gaaatagaat aaaagaattg agaaatgaaa      6180
     caaggtttct tacaaaagaa gcagacgagc aaagaacctt ttatcaggaa accttgagta      6240
     ggtttacgaa aattactaag catataaata aggagcagga agatataaat ttgtttataa      6300
     agaattataa gaataacgta tttagggaac taacacaaga gcacaatgaa atacatatgc      6360
     tccagcattt gaataggatt agttacagta ttgatttgtt aacagtacac ttaaacaata      6420
     ttgcggaaag catattgtta gcgaaacttc gcattgtgcc taaattcatt ttagcagaga      6480
     cagaattaga gaggattata cagtttgtag agagtcaagg gctcaaaatt gtttcaaatg      6540
     aacaagttta cgaactaata aatatacaga cacaaataaa tgagacagac ataatattta      6600
     gggtaagagc tccaattttt gagccaaatg tttatcagct atatcatgtt ataccaattc      6660
     caattaatgg aactcattta ttaataatac caaattatgt agcaattaat aagtataaaa      6720
     taagtttctt taacaaccaa tgttcaaaag ttcatgaaac ttttatttgt gagagcgaag      6780
     agttgggtgt tgagacaaaa ggaaaggagt gcttgaggaa gattttaacg aacaaaccac      6840
     caatatgcga ttcagtaaat ctagagggaa gagaaatggt tttggcacct gaggatggac      6900
     acatattcat tttcaatgct ttgaacttac ctgtaaacaa cacgtgtgga gaagatatta      6960
     caatatcagg ggcgttagca atcaaatatg caaactgttc gatcgaaata aatggcataa      7020
     agtatgatgg ccaagttatg gaacataaag aggaccatat agtacttacc actacaataa      7080
     gtaagcagat acttataaat aacactaaac aggagttaaa cctagaagtt ttacatcttg      7140
     aagatatgag aaacctcaaa aaagtagtgt acatgggaaa agtacaggaa acacattttt      7200
     ccgtaatata tggtatgctg gtgctcctag cgataacggt actggcaata tggagaatta      7260
     gaaaaacaaa aacaatcttc acccccaatg cctttcttca caatgtcgct ctggatatac      7320
     cacagatgtg gccatcgctc cattctaggg ggggagg                               7357
//
ID   Gypsy-26_DEl-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.06, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DEl-I;
KW   Gypsy-26_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-395
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3096-3096 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. AG-CT termini.
XX
SQ   Sequence 395 BP; 133 A; 100 C; 63 G; 99 T; 0 other;
     agttaccgta ccggtaccat cgactatgcc accgcctaaa cctccccgtg ttaccctctt        60
     ccaagtggac agtgaccgac agctagccgt tcgttgtccc acataagttg cacataagaa       120
     atgcaacatc agcacaaggc aggatgttgc taaacgacac ccactcagca gagctccaga       180
     aaatactttg ttagcattta ctcacccaca catacataat tgtaaacaca taaaattctt       240
     tggcggaggt ttgatttgaa tctcaagcca caataaaaat tattccgttt ggaacaacca       300
     aagcgaacac atcaactgtt tatatataaa cgttaactga atattggatg agtaagaatc       360
     accgttaact actaccgtta caacatacta taact                                  395
//
ID   Gypsy-26_DMel-I repbase;    DNA;    INV; 3829 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3829
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 739-739 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 3829 BP; 1281 A; 722 C; 918 G; 908 T; 0 other;
     tttggggact caaccaataa aacaataaaa aggcgaccca tttgtaaagt gcagaaagtt        60
     gaagagttgt ggaattacgt caaaagtgcc aaatataaag ttgtaaataa aaagttgtaa       120
     aatttcgcaa gctggttggc gtcggtcgga aatttctaga agcgtgcgaa aagaaaagaa       180
     tgagtgagga ggagagaaag ggacagcgat atggtgctgt cacacggtcg tcggcaaagc       240
     gaggagaaat gtgtgcagac caaataaaag agatgcaagc agagagtagt aaaagtctac       300
     aacaaataat tcagctgctt actcttaaga ttcaagctga tgaaataacc cagaaagagc       360
     cgaagtaact gcagaccatt ttgaaaaaat tgtacccgac ttcgatggcg tcagcatccc       420
     agtggagatt tggcttgaaa attttgagcg taatgcagat gcatatgagc ttacggaaaa       480
     acaacgatat gtgcaggcac taggttatgg ttaaaatggc caagttgttt ctggagtcag       540
     agttggtgag cacatatgag caacttaaaa gtgtcgaaaa gtgccgatgt acatgcaaag       600
     ttgacgctca gaaagaagaa gatcgacgaa agcatgcacg aatacatgct aacaattaaa       660
     aaaatttcag cgcatggaca agtcgatgtt gagtctatta tcgcttatat agttgacggg       720
     ctggataaaa aaaaaagcga gttcaaattt gcattgtacg gcagcaaatc atacggcgca       780
     ctgttggaaa aatatgagtt gtacgagagc aagtgtgtta tcgaaaaacc gcaaaagtaa       840
     tacagtggtg gcagaaaaaa tataaccgat ggaaaagtat tcgttgctac aactaatgaa       900
     cacatgggaa aaaactgcat ggcaaaaaca aaatgtgatg cagaagtgtt attccgttct       960
     acgaggcctt ggctaagtcg cagccgctag ttaaatttat gggcagagta cacgttgacg      1020
     ggatcgaaga tacaaaagtt tgttgtgata tcaaacaatc acatcgagaa cgacttaata      1080
     ctttgctttg tatcgcagtt ctgcgtgact ttgtaggacg gagaattcat ctttacaaag      1140
     gcgtcagcgc ggccggaatg cgctgaatca aaagagctaa tgtacaatat tgtttcgaca      1200
     gatagtaaca tagatgcttc tccacagtac aagtcaatga tcgagtcaat gatagcagag      1260
     tacaagccag ccgaaaacaa cgctgaatgc ccggtgtcga tgaagatcgt gctagaggag      1320
     cgtacaaaac catttcgtca tcaaccaagc cgtcactcaa ctgcggaatc cgagtcgatc      1380
     agaaaacaag ttgacgcctg gttgcaggat ggcattgtgc gcaaatcttc atcgaacttt      1440
     gccagtcgag tcgtcgtggt caagaagaag gatggcacgg acagaatccg cgttgatttt      1500
     cgtcaaataa atagtatggt acttaaggac tgcttcccag tgcgacgcat ggtccgaaaa      1560
     tgtattcgta gttatggatc tggagaatag cttcctccac gtaccaattg aggagtccag      1620
     ccgcaagttt acagcgttca taaccaagga agggcttttt gaattcaatc gagcgccggc      1680
     cgtttttttt tttaagtcaa tcgagcgctg gccgtttgca atcgttttgt cagttgcgta      1740
     tttgaagact tgattatgca ggacgtactc cagttgtaca ttgatgacat tatcatatac      1800
     gcaaacacaa acgaggagtg catgtcaaag ttgagagcag ttctaaatca agcagccaag      1860
     tttaatctaa aaatgaaatg gagtaagtgc cactttctta agaacagaat tgacttactg      1920
     ggccacaccg tggaaatgga caagattcga ccaggacaag agaagacgca agctgtgcag      1980
     aggttcaaat gtccaaagaa cataaaaggc gtccaatcct ttttggggtt gaccggattt      2040
     ttccgcaaat tcattcgagg ctacactcag atcgttcgcc cgttaactaa cttgttaaaa      2100
     aaaagacgtg gttttcaaga tggaggcaga agaactaaac gctataagct gtctaaaaaa      2160
     tgcattgtca tcagaacctg taccaagcat atacagtcgg gaggcgccag ctgaagtaaa      2220
     tactgacgcg tccaaggatg gatttggtgc agtattgaca caggagtttg acaagcagca      2280
     gatccagtat tttattggag caaaaagacg tcgcagagcg attcaaagcg ccacagctac      2340
     attctggagg ttaaagcagc atatcttgcc atgcagaaat tacgctacta cctgctaggc      2400
     atacatttca agttggtgac agattgcgct gctttttcgc aaacaataag aaaaaagatg      2460
     tgccacgaga agttgcacag tggatacgtg ctctgcagga ctttaattcg aagtcgagca      2520
     tcgctccggc agcaggatga agcacgttga cagtctcagc cgatatccag gtttttgcca      2580
     taacttcaga agttgcagct agattaaaag ttgcccagga aaaggataac tacattaaag      2640
     ctatagcaga aatattaaaa ttgcagccgt atgaaaattt taagctgaaa ggtggaattg      2700
     tatacaaatc catgaacggc agtgacttgt tggtcgtacc cagagcaatg gagcatgaag      2760
     ttatagcgga tgcacacagt gttggccatt ttgcattgca aaaaacaatc acactacagc      2820
     gcagttctgg ataccacata tggaacgaaa agtagcccag ctgattaact tgcgtcaagt      2880
     gcattattgt caacaagaag ttgggaaagc cagaaggatt tttgaactgc attgaaaagg      2940
     gagtaagcca cttcataccc tccacatcga tcacttgggg cctatggatt caacgtcaaa      3000
     gggctacaaa tacatattta caatcgtaga tggattttcc aaattcgtat ggcttttcac      3060
     cactaagagc accggcaccg atgaagttgt aaaaaagttg gaggaatggt ctaatatttt      3120
     tggtcagccg ctacgcatta tcagtgacag gggcgtggca tttacctcaa acagctttga      3180
     agaatatacc aagtcaaatg gtattgaaca cgtttggaca acacaggagt tgctcgcggc      3240
     aacggtcaga tagagcgagt caacagatgc attctatcaa taatcagcaa gttatcaatt      3300
     gatgacactt caaagtggta caagcatgta tcccaggtgc agaaagcgat caatgcccat      3360
     attcattgct ccacaaagaa gacgccattt caagtaatgt ttggagtaaa catgagtaat      3420
     aaggttagtg aaatacacta actactctag aacaagagct ggtgacagac ttcgacgccg      3480
     ggagactgaa ttaccaagga ggtaaaaaca catattcagc aggcgcagca aaagtataaa      3540
     gacggctatg atcgcaaacg caagggcgag gtacatataa agaaggagat ctggtggcta      3600
     ttaaacgaac tcagtttgtg actggcaaaa actagctagc agttttctcg ggccatataa      3660
     gtaactaagg taaaaagaaa cggccgatac gatgtacgga aagcagctca ggtggaaggc      3720
     cctacaataa ctgcaacatg tgcagaaaat atgaagctat ggaagtacgc gtctacaaat      3780
     gaagatctat ggtcgtctgg gtcagacgac agtgatcagg atggccgaa                  3829
//
ID   Gypsy-26_DMel-LTR repbase;    DNA;    INV; 326 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-326
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 724-724 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 326 BP; 125 A; 43 C; 72 G; 86 T; 0 other;
     tgtaacaata gttatcgata tgcgatgatc gataatcatc gcaaagggta gcgtcgtgag        60
     cgcaagtaga tataagaaaa taggacaagc atagagagag tcgaagtaga acaaagcgag       120
     ttgaaggttg tgtagttaaa agatcttaaa gccgaaagtt gtcgtgtccg gagtaaggaa       180
     aagttgtgta gtcgtcgtat gtccggagat caagaagtgt tggcacgagt catcttttta       240
     ttaaatacct aatataataa gcaaactatt ataatatcaa aatattacta agataaacaa       300
     ttgtgctaaa caataaatat cctaca                                            326
//
ID   Gypsy-26_DP-I repbase;    DNA;    INV; 5621 BP.
XX
AC   super_49;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DP_;
KW   Gypsy-26_DP-LTR; Gypsy-26_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5621
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1537-1537 (2012).
XX
DR   Genome; super_49; Positions  495866  501486.
XX
CC   Positions [4749-5183] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           703..2256
FT                 /product="Gypsy-26_DP-I_1p"
FT                 /translation="MAVRRSTDDITTALQEAEPFCGICNEVLGTSEIIANT
FT                 PCRHKFHKLCILEQIRTNPKCPTCSLDCSALALTFSNNTLLAELNAEGTRP
FT                 TSANESFSTIDGTSNRPKKGQKFIRRGMNTRATQRSRLDRSLTETETNNTT
FT                 LPITSQVEIANYVQSAVSIQQAQLMEQLTSFLSKTIESSIQSQLASLQLTQ
FT                 PEHISPDVSGDNNINQTNNVGIGQARDSHAEVLLDFSRASANRSNSSSHVA
FT                 PAKVSSIMQNWRIKFDGSKTCMRMDEFIYRVRSLTQQNLYNNYQLLCDHLY
FT                 LLFAGKASDWYWKFHRNYPNFNWDTFCIEFRRRFEDVETDYDIWEKIRKRR
FT                 QGENESFDDFQYAIEDLVDRLQNSVTEEDVVNLLIRNSKPTLHHELLHLKI
FT                 ANRSLLRREVRKHEQFYNDIRSVKQRTLRSYVSELSGPDDSEQLFDDLVEH
FT                 NEVCQIQRRTSQSVPTCWNCDNKGHKFDDCVGPRKIFCYGCGTKDTYKPVC
FT                 PKCNPPGNRQKDVLNNNKQTHP"
FT   CDS           2502..4049
FT                 /product="Gypsy-26_DP-I_2p"
FT                 /translation="MVRKNKNKFVSAIFLSSDNRLYTSVTIEGSDYIALLD
FT                 SGATISCIGGSAAKEMLAHCKVKKCSGAIRTANDTESKVIGKLVTQINYRG
FT                 CTADLEMFLIPELKQDVYLGIDFWQKFGLLDKISHTAEVSELDVGGTDDVE
FT                 EPPNLHKLTADERIRLDKVIGCFPSFATEGLGRTSLVTHSIDVGAAIPVKQ
FT                 RHWPVSPAIEKLIFAEVDNMLALDVIEESTSPWSSNCVLVKKGEKYRLCLD
FT                 SREVNKVTRRDAYPLPHIDGILSRLPPARYITGLDMKHAFWQIPLDEQSRQ
FT                 YTAFTVPNRPLYQYKMMPFGLCNAAQTLCRLMDRVIPAHLRTRVFVYLDDL
FT                 LVLSEDFESHLLLLQEIALCLRKANLTINIGKSNFCIKEITYLGFIIGNGR
FT                 IKTNPDKIKAISKFPVPVTVKQLRRFLGLSGWYRRFVENYATVSFPLTKLL
FT                 KKKKDLQCNEDAQQSFETLKSCLTASPILITPDFSKPFILLCDASTYGIGC
FT                 VLAQERDGVELPNVIIRLPN"
XX
SQ   Sequence 5621 BP; 1800 A; 1093 C; 1143 G; 1585 T; 0 other;
     tatatggcgc ccaacgtggg gccaggcaac ttgccttaga atctaaaacc aattcaaagc        60
     cgatattaaa atttggattt atagtgtctt actatatagg ccgtttattt taataagaca       120
     agcaaatctt gatctggttc tccaagctca accggtaaca catcaaaatt tcaacgacac       180
     gttttctttt gcaaaatatt gcacaaaggt taaagatttc aaaatttata ctttgactcg       240
     gttttcggat ttagcaactg caattcattt tatttcggat tggttgacca aaacagacct       300
     atagtatcga attgtgagta tcagagacag ttatgcaata ccatacagtg atcagaataa       360
     acaggaattg ttttaggatt tagcggttcc aattcagttt attttggatt gatcgaccaa       420
     agcaaacctg ctttttcact ttaggcatct tgagttattc ggatttacaa ttttatattg       480
     ccaaatcgcg atagttgtcc aatgattcag tgcacgaggt cattaactta taaatagtcc       540
     atattaacga aaatagaaaa gcctactgaa accaaataga tatttcgtaa gtattctggc       600
     atgtgggaaa gacagacatt attattacaa ttaatacctt cttatataat ttttttttat       660
     tattattttt tctttaattc cttaaatatt gtctgatata caatggctgt aaggcgaagt       720
     acagatgata taacaactgc gttgcaggaa gcagaaccat tttgtggaat ttgcaacgaa       780
     gtattgggaa ctagtgagat tatagccaac accccgtgta gacacaaatt ccataaactt       840
     tgtattttgg aacagattag gacaaaccca aaatgtccca cctgttcatt agattgttct       900
     gctctggcac taacattctc taacaacacg ttgttagccg agcttaacgc cgaaggaaca       960
     cgaccaacta gtgctaacga atcttttagc acaatagacg gaacgtctaa tcgacctaaa      1020
     aagggccaaa agtttattag aaggggtatg aatacgagag caactcaacg atccaggtta      1080
     gatcgctcac taacagaaac tgaaaccaac aacacaaccc ttccaataac ctctcaagtg      1140
     gaaatcgcta actacgtcca gtctgctgta agcattcaac aggctcagtt aatggaacaa      1200
     ctaacttcat ttttaagcaa aacaattgaa tcttcgattc aaagtcaatt agcgtcactc      1260
     cagctgacac aaccagaaca tatctctccc gatgtttccg gtgacaataa cattaaccaa      1320
     acaaataacg tgggtatcgg tcaagcacga gatagtcacg cagaagttct tttagatttt      1380
     tcaagagcga gtgcaaatcg aagtaattcg agctcacacg tagcaccagc aaaagtttcc      1440
     agtataatgc agaattggcg cattaaattc gatggttcaa aaacttgcat gaggatggat      1500
     gagtttattt atcgagtacg ttctctaacg caacaaaatc tttataacaa ttatcaattg      1560
     ctttgtgatc acttgtatct tttattcgcg ggaaaagcta gtgattggta ctggaaattc      1620
     catcgaaatt acccaaactt taattgggat acgttttgta tagagtttag aagaagattt      1680
     gaagatgttg agaccgacta tgatatctgg gaaaagatta ggaaacgtcg tcagggcgaa      1740
     aacgaatcct tcgatgactt tcaatatgct atcgaagatc tcgtggatag gcttcaaaat      1800
     tcggttacag aagaagatgt tgtgaatcta cttattagaa attccaagcc cactcttcac      1860
     cacgagcttc ttcacttaaa gattgccaat agatcgttat tacgacgaga ggtacgtaag      1920
     cacgagcagt tttataacga tataagatcg gtcaagcaaa ggactcttcg ctcatacgta      1980
     tcggaattgt caggtccaga cgatagcgag cagctattcg atgacttggt cgagcataat      2040
     gaagtgtgtc aaatacaacg tcgtacttca cagtcagttc caacttgctg gaactgtgac      2100
     aacaaaggtc ataaatttga cgattgtgta ggtcctcgta agatcttttg ctacgggtgt      2160
     ggaacaaaag atacttacaa accggtatgt cccaaatgta accctccggg aaaccggcag      2220
     aaggatgtgt taaacaacaa caagcagaca catccttaga aaaaagtttg caagaatcac      2280
     ctactagttt aacgaacgac caaagtttaa gggagcctaa gatcagctca caaacagtag      2340
     aggaaaccct gcctacggca tatcattttt catttactcc tttacctgaa agggaagcaa      2400
     attatattac aacgcgtaag aaaatttttg ataagataga tagttttaaa tttgtaagaa      2460
     agcccaaacg ttcaactaaa cgtttgagac aattttggaa gatggttcgc aagaataaga      2520
     acaagtttgt ttcagctata tttctcagtt cggataacag gctgtacacc agtgtcacca      2580
     tagaaggcag tgattacata gctttgttgg attcgggggc cacaatcagt tgtattggag      2640
     gttcagccgc gaaagaaatg ttggcgcatt gcaaggttaa gaagtgttca ggagcaatac      2700
     gaacggctaa cgatactgaa agtaaggtta taggcaagct ggtaacacaa attaattacc      2760
     gtggatgcac ggcagaccta gaaatgtttc ttattcctga gctcaagcaa gacgtctatt      2820
     tggggataga cttctggcaa aaatttggac ttttagataa aatctcacac actgcagagg      2880
     tatctgaatt agatgttgga ggtacggatg acgtcgaaga accaccgaac ctacataaat      2940
     tgacagcaga cgagagaatt cgcttagata aagtgatagg ttgttttcca tctttcgcta      3000
     ctgaaggatt aggccgtacc agtttagtca cacactctat agatgttgga gcagctattc      3060
     ccgtaaagca acgacattgg ccggtatcgc cagccataga gaaattgatc tttgccgagg      3120
     tggacaatat gcttgcgctc gatgttatag aggagtcgac tagtccctgg agcagtaatt      3180
     gcgttttggt aaagaaaggc gaaaaatata gactgtgtct cgattcaaga gaagtgaaca      3240
     aggttacaag acgggatgca tatccgttac cacatattga tggtattcta agtcgattac      3300
     cacccgctcg ttacatcact ggattagaca tgaaacacgc attttggcaa atcccgttgg      3360
     atgaacaatc gcgacagtat actgcattta cagtgcctaa ccgaccatta tatcaatata      3420
     aaatgatgcc atttggtctt tgcaatgccg ctcaaactct gtgtagacta atggatcgag      3480
     ttattccagc tcatcttcgg acacgtgtat tcgtatattt agatgatcta cttgttttat      3540
     cagaggattt cgagtcgcac ttactgttgt tacaggagat agcgttgtgt ctacgcaaag      3600
     caaatctaac cattaacata gggaaatcaa acttttgcat aaaagaaatc acgtatttgg      3660
     gttttattat tggtaatggt cggataaaga caaatccaga caaaatcaag gccatttcga      3720
     agttccctgt gccagttacc gttaagcaac tgcgtcgatt tttggggtta tccggttggt      3780
     accgacgttt cgttgaaaat tatgctaccg ttagttttcc cctaaccaag ttgcttaaga      3840
     agaaaaaaga tttacagtgc aatgaggatg ctcaacagtc gtttgagacc ttaaagtcct      3900
     gtttaaccgc atcacccatt ttgataactc ctgacttctc aaaacctttt attttgctct      3960
     gtgatgctag cacttacgga atcggctgtg ttttagctca agaacgcgac ggcgttgaat      4020
     tgcccaacgt aattattcgg ttaccgaact agagtgctta gcagtcataa agggaataaa      4080
     aaaattccgc tcttatattg agggacagga cttcgtagtc ataaccgatc acgcagcact      4140
     taaatggtta atgcaacaaa aggatttatc gggtagatta gccagatggt ctatgaaatt      4200
     gcgtagtttc acatttaata tcctacatag aaaggggaca ctgaatgttg tcgctgacac      4260
     tctatcgcgt caggatgaac cggctataga ggagctcacg caaataagcc ccatggttga      4320
     tctagactca gatcaattca aatcagctga gtatctgagt ttaatagaaa gtattcaaca      4380
     gaatcagagt aagttcccag acttgaaagt gatagacggt caagttttca aaaggacagt      4440
     attcgcttcg ggagatgagt ctcaagagaa cgcatcatgg aaactttggg ttccgtcagg      4500
     gttaattacg aacgtattat atcaagctca tgacgcccct agctccgcac attgtgggat      4560
     gagtaaaacc atagagaagc ttaaaagata tttattctgg cctcgcatgg ttagccagac      4620
     gcgcaagtac atatctgaat gcaccgtttg tcgcacgacc aagagtccga atatgattct      4680
     tagacctcct atgggtaaac cattcacttc ggataggccc gttcagaaat tatacataga      4740
     tctcttagga cccataccca cgcacgaaaa agggaaacat aggattgctc atagttgttg      4800
     atcacaatac taagttccat tttctgtgtc ccttgaagaa atttacagcc cctaagatct      4860
     gtgaatatct ggaagggtct ctcttttata catttggggt gccagaagtc atcttgtcag      4920
     acaatggatc ccaatttaaa tctagctact ttcaggcatt tttaaatagc ttcggtataa      4980
     cacaaaaatg cacagctatt tattcaccgc aagcgaatgc cagcgagcga ctgaacagat      5040
     ccgtgatagc tgcgatacga gcttatatcg gtaacgaaca ttccaattgg gactgtaacc      5100
     tgaatgccat tagtggttca ttgagatcta ccttacatag gagtacaggg tattctccat      5160
     attttctagc atttggtcaa aacatgatgt tgaatgggaa ggattacgca ctcttgcgta      5220
     aactagacct tttgaacgac gatactagaa tggagaaccc agattccttg cagctaatcc      5280
     ggcaacaggc taaagcgaat gtcaataagg cacacgaaga aaattcgcat agatacaatt      5340
     tacgctgccg tgatacacaa ttaaagattg gagatttggt atatgctaga aatttcacac      5400
     aaagtagtgc tataaaaaag tttagttcta aactagcccc tgtgttcatt cccgctcagg      5460
     taattaaaaa gcgaagtccg tactattacg aattggtcga tgagaacaag aaatatctcg      5520
     gcgtgtatca tctgaaagac attcaaatca ggaaataatc tctcctaatc aagttcttca      5580
     gataattatt cgtcgagcag gtcttgtata attatctgtg g                          5621
//
ID   Gypsy-26_DP-LTR repbase;    DNA;    INV; 2159 BP.
XX
AC   super_49;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DP_;
KW   Gypsy-26_DP-I; Gypsy-26_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2159
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1538-1538 (2012).
XX
DR   Genome; super_49; Positions  493707  495865.
XX
SQ   Sequence 2159 BP; 672 A; 424 C; 422 G; 641 T; 0 other;
     tgtagtagcc agcacaaaat atagggaatt ggttatcttc tttcgtctcg tgagaccccc        60
     tagtgatatt tcgaacgatc aagctttagc cgctcttaag gttggatcaa agccttagcc       120
     gctcttaagt ccgaacgccc acgaacacat acaagcgacg gacagtggga agcatagacg       180
     gcaatcgtac gattgcacag ttaagctatg ctgtgcatta gacgatcgtt ttatgctgct       240
     gcgaatgttc tggatcatac gattgcacag ttagtaaaaa gctcaaaagc tctgctgcac       300
     tggctactca gtccatcgtc tattactgct ttgaacaata taagaaagtt gatcgatctg       360
     taaagacgtg ataatttccg agtgcgagca acatacatat tgcacacaca tatatatagt       420
     gctatccgga aaatatatat atttccacaa atatatgctg gaagcatata gttacaagtg       480
     ccgtacagtt cagtggtcag tgaatgacaa gaatttagtg cagatatatt tgggaaaaga       540
     ggtatgtttt catattagtg ccgtgcacgt gctgacataa cctatgttgc agggaggtgt       600
     acctaagctg ccccatcgcg gtatagtctc gagaagacta ccctgggagc tggcttaggc       660
     gaacagttgt cgaggtttct ccaactccaa ccataattca tgttttctgg accttatatt       720
     gccaccaagt cggaatctcc aaagatccaa gtggaacaga tcagccttaa tcgccaagaa       780
     tatttagtgc tgctcagaca taaataacta aatacaggct tggcggaaga ttcgtcagta       840
     cggccaggaa ccatatacat cgcacctgtt gacctctaac caacttcagg cggtcaacag       900
     tctacaaagc agcagcacag gatcgagttt tgtccaattt acatttaatt cattatcaag       960
     ttccaacgca taaacatcag cagtttaacg taatgtaact gaaactttat taacacccct      1020
     ctttgatgtt acgcgcgtac atacctacat acatatgtgc atatgcacac taaattgtct      1080
     tcgtttgcta ccttttggtt caattttcgc gatagagcat aacaattaaa tttctgtctg      1140
     tattatgaaa accaaaacaa ctgactgatg actatgcgac ggtgtttgta gcgtaattgt      1200
     attgtatgca ttatatattt atgatttcca tattttaaac agctgcggtc aacatctacg      1260
     acatcattgg gcccaacgat cagcgtaaga caataacgcc ggagtgagta attatgtaca      1320
     gcaaaaagta gtttggtcaa aagagcctat taacttgaaa gtgtagatat gcatacaatg      1380
     tataatgatt caaacccgtc tgctcagtgt gtataatgca ccccagtctg atctagcttt      1440
     tgtttacgat ttcgattctt attgtctcgt ttatatatat atatatatct ataccctaat      1500
     gtttttcatg ctttaaaata atgaatttat aactaaactt atatgataat taggattaag      1560
     gaaatattac ccacaaatta gaagctaagt caattgttgt gtttctacaa ctgcaacgta      1620
     atgaatattg aaattgaagc ctcacattat attaaaatat gaatcttttt gaattgaaat      1680
     gaatctttaa aatcataaaa atggtctgtc gagtatccgt gccaggatct tataaaatgt      1740
     ggtaaacctt agtaaaggat tgatcaaggg acaatgcaag aactcgaacg caatgtcatg      1800
     gtagggtggg tacagaagag agggacaatc aacacctagg ttctctctaa atagaaatgg      1860
     ttcagtaggg cttttatttg gcgtgtcggc gctatcagta tttcagttta ctttgttata      1920
     tataatgact tatagttccc gtaaagtgca ctatttaaat gtagtggagt acgatagtac      1980
     aattaggcga ggaagaaccc cgaccatccg gcgagctaga cccgagccta gcaagagtgc      2040
     acacgaccaa ccctatttat ttgtacgccg tccttaagtc agtcatggtc atctgctgat      2100
     accgagggcc tatatatctg tttacatata tatatattta aactctggta cactacaca       2159
//
ID   Gypsy-26_DPse-I repbase;    DNA;    INV; 6105 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DPse_;
KW   Gypsy-26_DPse-LTR; Gypsy-26_DPse-I.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-6105
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1319-1319 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [985-1473] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           202..1827
FT                 /product="Gypsy-26_DPse-I_1p"
FT                 /translation="MTNPSSKLTRMRLELEEYNFTVEYLRGKDNFVADALS
FT                 RITISELKDIQNKVLKVTTRYQSRQKFCAENNKVEMPKQSTETASQPNVYE
FT                 VINNDEVRKVVTLHIKDMLCFFKHGKKIIARIDIGDLYTNNGNIDLGQLFP
FT                 RLEKEAGILKISQLKMAPWENIFEKVSIDNFKIMGNKILKTLRVALLNPVT
FT                 TLTNVKEKEAILSTLHDDPVQGGHTGIAKTLAKVKRHYYWKGMTRDITEHI
FT                 RKCQKCQKAKTTTNIKTPLTITETPMKAFDRVIVDTIGPLPKSEKGNEYAV
FT                 TLICDLTKYLVAIPVANKSAATVATAIFESFILKYGPMKTFISDMGTEYKN
FT                 SIINDLCKYLKIKNITSTAHHHQTVGTIERSHRTFNEYIRSYISVNKTDWD
FT                 VWLPYFVYCFNTTPSMAHNYCPYELVFGKTNNLPKYFDSISNIEPIYNIED
FT                 YAKESRYRLEVAYKRARNMLELNKQKNKELYDLKTRNITLSIGDKVLLKNE
FT                 VGHKLDLKYTGPYIVEKIEDNDNIVISGNKNKKQTVHKDRLKFFNS"
XX
SQ   Sequence 6105 BP; 2514 A; 1091 C; 1007 G; 1489 T; 4 other;
     gtgctaacac aagcccacaa cggaactcaa ctcccaatag cttacgcatc gagagcattt        60
     accaaaggag aaagtaacaa aagtacgacg gaacaagagt taacagctat ttattgggca       120
     atcaccaaat ttagacccta tgtctacgga actcatttca tagtaaaaac agaccataga       180
     ccactaacat ttttgttttc aatgacaaac cccagttcta aattaacgcg tatgagactt       240
     gaattagagg agtataattt tactgtagag tacctaagag gcaaagataa ttttgtagcc       300
     gatgcattgt cacggataac aatatctgaa ctaaaagaca tacaaaataa agtcctgaaa       360
     gtcactacca ggtatcaaag tagacaaaaa ttctgcgcag aaaacaacaa agtagagatg       420
     ccaaagcaat ctaccgaaac agcttctcag cccaacgtat acgaagtcat taataatgat       480
     gaagtacgta aagtagtgac cttgcatata aaagatatgc tatgtttctt taaacatggt       540
     aagaaaatta tagcaagaat tgatattgga gatttatata ctaataatgg aaatattgac       600
     ttaggacaac tatttccaag gctagaaaaa gaagccggta tattaaaaat cagccaattg       660
     aaaatggcac cgtgggaaaa tatctttgaa aaggtttcaa tagataattt caaaattatg       720
     ggcaataaaa tattgaaaac attgagagta gcgctactca acccggtgac cacattaaca       780
     aatgttaaag agaaagaagc tatattgtct acactacatg atgatccagt acaaggaggt       840
     cacacaggca ttgcaaaaac cttggccaag gtcaaaagac attattactg gaaaggtatg       900
     actcgcgata taacagagca catccggaaa tgtcagaaat gtcaaaaagc aaaaacaaca       960
     acaaatataa agaccccttt aacaattaca gaaaccccga tgaaggcttt tgacagagtg      1020
     atagtggata caattggtcc actacccaag tcagaaaaag gcaatgaata tgcagtcacg      1080
     ctcatatgtg acttgactaa atatctagtt gctatacctg tcgcaaataa aagcgcagca      1140
     accgttgcaa cggcaatatt tgaatcattt attctcaagt acggtccaat gaagacgttc      1200
     atttcggaca tgggaacgga atataaaaat tcaattataa acgatttgtg caaatattta      1260
     aaaataaaaa atataacatc aactgcacac catcatcaaa ctgttggaac aatagaaaga      1320
     agccacagaa catttaacga atacatacga tcctatatat cagtaaataa aactgattgg      1380
     gacgtatggc ttccatattt tgtttattgt ttcaatacaa ccccctctat ggcacataat      1440
     tattgtccat atgagttagt atttggtaag actaataatc taccaaaata ttttgatagc      1500
     ataagtaata tagaacctat atataacata gaagactacg ctaaagaaag tagatataga      1560
     ttagaagtag catacaaaag agcaagaaat atgctcgagt taaataaaca gaaaaataag      1620
     gaattatatg atttaaaaac taggaacata acgctatcaa taggagataa agttctacta      1680
     aaaaacgaag taggccataa gctagatctt aaatacacag ggccctatat agttgaaaaa      1740
     atcgaagata atgataatat agttatttcc ggaaataaga ataaaaaaca aacagttcac      1800
     aaagataggt taaaattttt taattcataa cagacacaaa ataaaataaa ataaaataca      1860
     aaaaaaaaaa gagaaaaama aatttaatta tacaagatgt gcaaaaagat atgcatacac      1920
     agaaaaaaaa aaaaaaaact taaatacatt acaaatacaa aaaattttca aatcaaaatt      1980
     tttttatata tataaaacaa atttaagtaa aataactaca tttaattacg ttatttttca      2040
     aaaggaggga gatgtagtat gtgcatatat tgagtgtaca ctgtacccaa tggttaacaa      2100
     taaatgtatc agcaacacat tgttgcagta cacaaacaaa accacttcaa gtgagcgtgc      2160
     aatatgatcg ccgcttatgc gctaagctaa gtcagcattc ccacgctgac cacttgaagc      2220
     atatatatat atacacatat gtacatacgg ctcttgccct ctcgattatg ctgataagac      2280
     aaatatgtat gaagccgctc cgctgttggc gtaaccggca gcgcagctat gcggtctgag      2340
     ttataagaat aaattcaata aagacattct aaaaaccgaa gtcaaacggc acagacgtgc      2400
     cagtgttata attgcaatak tgacatatta catggcgacc gtgacaagtg tcacgaacat      2460
     gtagatgttc ggaacaaama tatgttaaaa taaatcacat gaaaaaaaaa gcggagagcg      2520
     agagagagag cggcgagagc ggacaacaca gcagcaccac agcaggcacc actggaagca      2580
     gcagtaacat caaaaaaatt aacaacgaaa tggagcggaa ctgaacgcag taagtagagt      2640
     ggtatgtgtg gcaaaagagg cggcgtagta aaacgcctga gagccagaag ggcaacacta      2700
     ctaaaactgc taaatagcaa cgataatttg ccgtggagca catctgtgaa attacacgca      2760
     gagctcgatc acatcaaatt gttgctagca gaaaagaaaa tgaaagagcc aacgcacaca      2820
     accacctaca ctgcaataca aaatatcagt aaaatattaa tcgtaactcc accaccccaa      2880
     acgacagaaa tagcaaagcc aaggaagacc tgcccgaacg actgcgaggg acctctacac      2940
     tcgccgcatt gcgagtacac ctgtgcagcc tgcaccggtg ccccaacaga gaagcagtag      3000
     cagcctgtgc agccagcacc ggcctcgtct agcgcaacaa gctagacccg gagcagtgaa      3060
     ccgacagcgc ttcctagagc gcccaccgcc aaacaaaatt ttttttataa atgcctgcga      3120
     tgcatacaac ttaactgtaa gatctaaaat tgtaaaattg agcggaataa catctgccca      3180
     attagagtga ggcctgtaaa gccacacaaa cactaggcag gaaaaaaaaa tataaaaaca      3240
     gaaaaaaaaa tataaattat aaattaattt caacaattaa caaagaatct atacggtagt      3300
     ataaaagaaa aaaaaagaaa tttgtttttg cattaaatta tatacatatg tcacgaacaa      3360
     acaaaataag taaatttgaa gaaaatttcg aaaattttta cacaatgggt ttagtagatg      3420
     taaaatcggt agattcgaca gcgaatgtaa taaacaaagt cgaagtcaat aacaccgacc      3480
     taaagctaat aacaatactt attgctatta ttttcattat aatcatagga catctattat      3540
     ataaattgta taagctacat aatagatgca taaagaaacg ctatcaaagc cgggcagatg      3600
     acctggacaa aatttaaaac aaatttataa tggtaacgaa aattggccaa aaataaaaga      3660
     aaaagtccaa aacgaatcat gaataaaaat atatcattat ttgattgaaa acctataaat      3720
     gtttttgcac attttaataa ttattttaaa atgaaatgga atggcaaaat attaatgccg      3780
     cattagttaa aataaaagaa aattttgata aatcatacaa gtgcctagca caaaatagga      3840
     atatttcaaa cgaaactata agtagacacg cgacamtatt agttgcatgt tttaaccaag      3900
     ctcgttccct gatacacgac aataaagaaa agttaaatac tcagcattgg tcgtatgtat      3960
     caagattttt gaatagatta aaaacaaatt taaatagcat caaatcaaaa tattcactag      4020
     acataactat accttcgatt ttgaatactc cagtattagt cgaggaagac acaaacacag      4080
     atttagaggg cgaatctgaa atcgcaagcg gttcagatac acatataaaa gaagaagacc      4140
     taggcgacct tacgatacca gcggtaatca cactaaccaa tctagttgat tctgaatcag      4200
     agtctattac tgaagtaaaa actctaaaaa tggccatgtc acaactagaa tttcttaagc      4260
     tagccgcttc actcatacct gagtttagtg gaaagcctga gaatctacaa agtttcattg      4320
     atgctcttag cttagtggat tcacttaagg gaacacatga aactacagca gtcaacctaa      4380
     taaaaactaa actcaaaggc catattcgaa acttaatcac cactgaacaa acaatagtgt      4440
     ccataataga caaactaaaa agcggtataa aaggcgaatc agccaaagca atatcagcta      4500
     aattgttcaa tctgcagcaa aagcaaaaga cggcaagtca atatattcaa gaagttgaac      4560
     agttgacaag ggctttgcaa tcggcacata tgattaacgg tgtatcgcaa gaatatgccg      4620
     aagaattgag cctacaagtt gctgtaaaat caatcatagg aaacagcaca attgacgaag      4680
     ttaggtctgt aatgaaatca cgaaatttca atacaatgag tgagattaca actgtgttcg      4740
     tcgatagttg cacagacgca gtaggacacc caaatacagt cctatatgct gcacaacaga      4800
     gatataacac taaccgagcg tataaccgcg gaaactaccg tggaaactac caaaataata      4860
     attatggcaa caacagaggt agaggccaat atagaggaaa ctatagaggc cgcggtaact      4920
     catacagagg ccataacaat aataatggca ataacaacaa tgtgagaatt gcccagaatg      4980
     aatcgggaaa ctcacaacag cccttaggta cacagcaata gacagtaaaa aggttcattc      5040
     gattaatctt agtataaata tattcgtaac attcacaaac gtagctacag gcaagaaatt      5100
     aatatttttg atagatactg gtgcagacat atctctgtta aaagacagtt cagacacttt      5160
     taatgacata aacaaaaaca acaaaataaa tattcaggga atcaatcaag gattaattca      5220
     atctaaagga atgacatcct tagaaataca aacaactaaa tatataattc cacacaactt      5280
     ccatattgtc gaatcaactt tttctatacc gtgtgatgga attttaggaa tagattttat      5340
     taaaaaattt aattgtcaac tagatttcac accttcaaaa gatctgctca taataagacc      5400
     agacaatcta aactacccta tttatgttcc cataaattac agctctggta acaatacaat      5460
     agtgttacca gcacgatccg aagttgtccg taaaattgag ttaacttcaa atgaagatag      5520
     catttttatt ccgaaccagg aaattcaacc tggtatatat gcagcaaaca cagtcgtaac      5580
     aactgcaaat gcattcgtcc gtttacttaa tacaactagt accgaccaaa tgattaatat      5640
     aaataagttg aattatgaac cattagcaaa ttatgatata tccgaaataa ataatgaaac      5700
     tagaacgaac gatgttatat caaagttatc taaaaatttt ccaaaactat ttaataaaca      5760
     attaaaagaa ctttgttgta actacgcaga catattcgga cttgataccg aatcaataac      5820
     aaccaataat ttttacaagc agaaactaag attaaaagat aatgaacctg tatatataaa      5880
     aaattataga aatcctcata gtcaaaaaga cgaaatccaa gctcaagtcg ataaactaat      5940
     caaagataga atagttgaac cgtcagcctc agaatacaac agtccacttt tactagtacc      6000
     aaagaaatcc atagacaaca aaaagaaaaa atggcgatta gtagttgact atcgccaaat      6060
     taataaaaaa ttactatccg ataaatttcc acttcctagg atcga                      6105
//
ID   Gypsy-26_DPse-LTR repbase;    DNA;    INV; 706 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DPse_;
KW   Gypsy-26_DPse-I; Gypsy-26_DPse-LTR.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-706
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila pseudoobscura genome.";
RL   Repbase Reports 12(7), 1320-1320 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 706 BP; 240 A; 134 C; 114 G; 218 T; 0 other;
     tgatatcttg gatcaactag gaagagcaaa atatttctct tgccttgact taatgtcagg        60
     attccatcag attgagctag acgaaaactc tagagatata acatcctttt caacgagcaa       120
     cggctcttat cgcttcacgc gattaccatt tggtttgaaa atagctccca attcattcca       180
     aagaatgatg actatcgcat tctctggact tgaaccatca caagcattcc tctatatgga       240
     tgacttaata gtaatcggtt gttccgaaaa acacatgctt aacaatttaa ttagtgtttt       300
     tgacatgtgt aggaaacaca acttgaaact acatcctgaa aaatgttcat ttttcatgca       360
     tgaagtcaca tttttgggcc acaaatgcac agataaggga atcttaccag atgacaaaaa       420
     gtttgacgtc atattaaatt atccagtccc acatgactct gatagcgcta gacgttttat       480
     agcattttgt aattactaca gacgattcat caaaaatttc gccgattatt ctaggcatat       540
     aacaagatta aataaaaaga atgttccatt tgaatggact aatgactgtc aaaatgcatt       600
     tgaatatctt aaagctcaat taataaagcc tactctgtta caatatccag attttacgaa       660
     agaattttgt ataatcaccg atgctagtaa gcaagcctgt ggtgca                      706
//
ID   Gypsy-26_DWil-I repbase;    DNA;    INV; 4613 BP.
XX
AC   scaffold_181145;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DWil_;
KW   Gypsy-26_DWil-LTR; Gypsy-26_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4613
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181145; Positions  903584  908196.
XX
CC   Positions [2003-2578] - Reverse transcriptase
CC   Positions [3629-4090] - Integrase core
CC   'CTGAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..4531
FT                 /product="Gypsy-26_DWil-I_1p"
FT                 /translation="MCLVAYSIECVTHKNKHIIFVYIFRYWNFLLKIMSEI
FT                 KPFLCDTIDKSLLRHEWEKWLRSFTLYLDAEDITSIPKKKSKLLHLGGPQL
FT                 QEIIYNIPGALVDYDAQENNDVYKVLVGKLDEYFAPLRNSSFERHLFRNLS
FT                 PLEGETFNRYVIRLRQQLAKCSYGTTKAEIEDICLADKIIDSWASNDLKKR
FT                 FLEKEQKLSDLIDACQVHEQVNKHSKTMLAEEVSDSVNKIFARKRFGRDPP
FT                 KACTRCGLEDHDANNGRCPARDKVCKRCNLLGHFARQCRTRNSKRSSDTGG
FT                 YSNPKRRKVYANVQSVEDQVKSDDDEDKELECFRIDGSARNDDNIRCNIGG
FT                 VSIGMIIDSGSPANLLCEKHWKMLCNSNAVMWNMRSQTTDRFKAYATEDPL
FT                 RVLNVFEAPISVKTNQEMIATFYVIEKGSQSLLGKKTAIQLKVLTLGLDVC
FT                 RIETSLPFSKIKGRVIKLAIDSSVKPVHQPMRRVPVAFEDKVADKIKDACD
FT                 RDIIEPVRGPSAWISPVVIAFKESGKIRLCVDMRMANRAIQRENYPLPTFE
FT                 TFMTKARGAKWFSRLDLKDAYHQLELHESSREITTFVTQQGLFRYKRLLFG
FT                 VNSAPEIFQRVMAEILAPCKNAHNYLDDVIIFGRTEAEHDKALQEVLNLFE
FT                 INCVLLNKDKCVYKAKELKFLGHILSSDGIAADPEKVKLILDFRPPETKEE
FT                 LRSFLGLVTYVGKFIADLSHITEPLRVLLKVNSKFVWSSEQEKAFVNLKNR
FT                 LARIPELSYFDPNRRTQIIADASPVALGGVLLQFDERNESVIISFASKSLS
FT                 EVERRYSQTEKESLALVWAVEKFFYYVAGLEFELVTDHKPLEAIFKPTSKP
FT                 PARIERWLLRLQAFKFKVTYRPGKENIADSISRLCKAQSCDSFDKGGDYNI
FT                 CQIVSCATPKAIAIPEIAKTSVVDREISAAVSHLKDDNWNEGLSSCYYPFR
FT                 AELSTVGSILLRGTRIVIPEVLRQRVLELGHEGHPGESAMKRRMRAKVWWP
FT                 RLDRDVEQHVKMCRSCLLVSQPTRPPPMKRHVFPDGPWQCLATDLLGPLPN
FT                 NDHVLVLIDYFSRYQEIKFIGSISSQTIITAFKEIFSRLGIPRSLRTDNGR
FT                 QFVSAQFKDFCEASGITLITTPPYWPQANGEVENMNRSLGKRLKIASLNKG
FT                 NFKEELQKFILTYNTTPHGTTGSTPSELMFNRTIRDKLPDIRDIIEEVVDT
FT                 SARDNDLINKQKGKLTGDKVRGAKESDIKVGDKVLLKNVIFPSKLTPNFET
FT                 TEYKVVERNGNEVELFGNGRKIRRNVSHCKKIPSNEGPPNNSKEDALTQTD
FT                 SQRLIHSSSYSVIPDQPQVIPSDPSSE"
XX
SQ   Sequence 4613 BP; 1535 A; 819 C; 1097 G; 1162 T; 0 other;
     ttggcgacga ctgggagaac tcggtggaaa agagaaacgt taaactaagt tgagtagatt        60
     gaattgtaat tcaattttta ttgttaagcg actgtggtga aatagcgcga gtcgtacaaa       120
     tgtacgagga ggctacaaga aaaatgatac aaaggtatca ggatagcgcg aatcgtacaa       180
     atgtacgagg aggctacatg aaaatgatac aaaggtatca agatagcgcg aatcatacaa       240
     atgtatgagg aggctacaag aaaaaaattg atacaaaggt atcaaaatag cgcgaatcat       300
     acaaatgtat gaggaggcta caagaaattg atacaaaggt atcagaatgt cgcgaatagt       360
     acaaaggtac aaggaagcta caagaaaatt gatacaaagg tatcaaaaga aaaattagca       420
     cgaatcgtac aaatgtacga gaaggacaca ggaagatgat acaaatgtat caaagtagtg       480
     gtacaaatgt gccaggagag cacgatggac gcaaatgtgt ctagtggcat attcaattga       540
     atgtgttaca cataagaata aacatataat ttttgtttat atttttaggt attggaactt       600
     tcttttgaaa atcatgtcgg aaataaaacc gttcctttgc gacacgattg acaaatcgct       660
     actccggcat gagtgggaaa aatggctaag gtcttttaca ttatatcttg acgcggaaga       720
     tatcacatca atacccaaga aaaagagcaa gcttttacat ttgggtggcc cacaactgca       780
     agagataatt tacaacattc ccggagcgtt agttgattat gatgctcaag aaaacaatga       840
     tgtctacaag gtcttagtgg gcaaactgga cgaatatttt gcaccgttaa ggaattcatc       900
     gttcgagaga caccttttta ggaatttgtc accattggaa ggcgagacat tcaacagata       960
     tgtaattcgt ctgagacaac aacttgcaaa gtgttcatat ggcacaacaa aggcagaaat      1020
     tgaagatatt tgtcttgccg ataaaataat tgactcatgg gcttcaaatg acttgaagaa      1080
     aagattttta gagaaagagc aaaagctgag tgatctaata gatgcttgtc aggtccatga      1140
     gcaagtaaat aagcactcga aaactatgct ggctgaagag gtaagcgaca gcgtcaacaa      1200
     aattttcgca aggaaacgtt tcgggcgaga tccacctaag gcttgcacca gatgtgggct      1260
     tgaggatcat gatgctaata atggaagatg tccagcgcgg gataaagttt gcaaacgctg      1320
     caatttgctt ggtcattttg ccaggcaatg tagaactcgg aactcaaaga ggtcttcgga      1380
     cacgggagga tactccaatc caaagaggcg caaggtatat gcaaatgttc aaagcgtcga      1440
     agatcaagtg aaaagcgatg atgatgagga caaagagttg gagtgtttta gaattgatgg      1500
     ttcggcaaga aatgatgaca acattagatg taacattgga ggtgtgtcaa tcggaatgat      1560
     tattgattca ggatcacctg cgaatttatt atgtgagaag cattggaaaa tgttgtgtaa      1620
     tagcaacgct gttatgtgga atatgagatc ccagacgact gacagattta aagcatacgc      1680
     gactgaagat ccgctcaggg ttcttaacgt ttttgaagca ccaataagtg tgaaaacgaa      1740
     ccaagaaatg attgctacat tttacgtaat agaaaagggt agtcaatcgc ttctggggaa      1800
     gaaaacggcc attcaactca aggtcctaac gttagggtta gatgtttgcc gtattgagac      1860
     ttcattgccg ttttcaaaaa taaaaggcag agtgataaaa ttggccattg attccagcgt      1920
     gaaaccagtg caccaaccta tgagacgggt tccagtggca tttgaagata aagtggcaga      1980
     taagataaaa gacgcttgtg atcgtgacat aatagaacca gtaaggggtc cgagtgcatg      2040
     gatctcgccg gtggtaattg cgttcaagga aagcggcaaa ataaggctat gcgttgatat      2100
     gaggatggca aacagggcta tccaacggga aaattatcca ctaccaacct ttgaaacttt      2160
     tatgacaaaa gccaggggtg cgaaatggtt ttcgagactg gatctcaagg atgcctatca      2220
     tcagcttgaa cttcatgaat ctagccgcga aataacaact ttcgtgacac agcaagggct      2280
     gtttcgatat aaacgtcttc tttttggcgt taattcggca ccagagattt ttcaacgggt      2340
     gatggcggag atcttggcac catgcaaaaa tgcacataac tatttggacg atgtaataat      2400
     ttttggaaga actgaagctg agcacgataa agcgttacaa gaagtgttga atctgtttga      2460
     gatcaattgt gttttgttaa acaaagataa atgcgtgtat aaggcaaaag agcttaaatt      2520
     tctgggacat atcttatcga gtgacggcat tgcggcagat ccagagaagg tgaaattgat      2580
     tttggatttt cgaccacctg aaacaaagga ggaactgaga agctttctgg gactggttac      2640
     atacgttgga aaattcatcg ccgatttgtc gcatattaca gagccattaa gagtactact      2700
     taaagtcaat agcaaattcg tgtggtcgag cgaacaagaa aaagcgtttg ttaacttgaa      2760
     aaatcggcta gctcgtatcc cggaactttc atattttgat ccaaatagac gaacacagat      2820
     aattgcagac gcaagtccgg tagcacttgg tggtgttttg ttacaatttg atgagagaaa      2880
     tgaatcggtt atcattagct tcgctagtaa gagcttatcg gaagtggaaa ggcgctactc      2940
     gcaaaccgaa aaagaaagtc tggcgctagt ttgggctgtt gaaaaatttt tctattacgt      3000
     tgcgggtttg gagtttgaac tcgtcactga tcataaacca ctggaggcga tcttcaaacc      3060
     aacatcgaaa cccccggcga gaatagaacg ttggcttttg agactacagg cttttaaatt      3120
     caaggttaca tatcgccctg gaaaggagaa cattgccgac tcaatatcaa gactttgtaa      3180
     ggctcagtca tgcgattctt tcgataaagg aggtgactat aacatctgtc aaattgtttc      3240
     ttgtgctaca ccaaaagcaa ttgctatacc agaaatagca aaaacaagcg ttgtggaccg      3300
     agagatatca gctgctgttt cacatcttaa agacgataac tggaatgaag gtttatcaag      3360
     ctgttattac ccgtttagag ctgagctatc aacagtgggt agcattctgt tgcgtggtac      3420
     ccgtatagtg ataccagaag ttctacggca gagagtttta gagttagggc acgaaggaca      3480
     ccctggcgaa tcggctatga agcgacgaat gagagcgaag gtgtggtggc cacgtttgga      3540
     cagagatgtc gaacagcatg tgaaaatgtg cagaagctgt ttattggtgt cacaaccaac      3600
     ccgtccacca ccgatgaagc ggcacgtttt tcctgacggc ccgtggcagt gcttagcaac      3660
     cgacctgttg gggcctctac cgaacaatga ccatgtattg gtgctgatag attatttttc      3720
     gcgttatcag gagataaaat tcatcggctc aatatcatcg caaacaatta ttacggcatt      3780
     taaggaaata ttttccaggc ttggcatacc gagatcgtta aggacagata acggccggca      3840
     gttcgttagc gcccaattca aggacttctg tgaagctagt ggcatcactt tgattacgac      3900
     tcctccatat tggccgcaag ccaacggtga agtagaaaac atgaatcgtt cattgggcaa      3960
     acgccttaaa attgcgtcgt taaataaggg aaattttaaa gaggagctac aaaaatttat      4020
     attaacctac aatacgacac ctcatggaac tactggctct acaccttcgg aacttatgtt      4080
     taataggacc attcgagaca agctgccgga cattcgagat attatagaag aagtagtaga      4140
     cacctcggca agagataatg acctgatcaa taaacaaaaa ggaaagctta caggtgacaa      4200
     ggttagaggt gctaaggaat ccgacataaa ggtgggcgac aaagttttac taaagaacgt      4260
     tatttttccc tccaaattga cacccaactt tgaaacaacg gagtataaag ttgttgaaag      4320
     gaatggaaat gaagtggagc tttttggaaa tgggaggaaa atcagacgga acgtgagcca      4380
     ttgcaagaag ataccgtcga atgaggggcc gcctaataac tcgaaggagg acgcactaac      4440
     gcagactgat tctcaacgct taatacactc atcatcatat tcagtgattc ctgatcaacc      4500
     tcaagtgata ccctccgatc catcttcaga gtaaatgtaa ctttcgactc gacgttcaac      4560
     tccagagaaa ccgaagcccg ggttaaaact gaagcttata agaaaaggag agg             4613
//
ID   Gypsy-26_DWil-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   scaffold_181145;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DWil_;
KW   Gypsy-26_DWil-I; Gypsy-26_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-172
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181145; Positions  903412  903583.
XX
SQ   Sequence 172 BP; 67 A; 25 C; 41 G; 39 T; 0 other;
     tgtggcaacc ctgccagacc gataacggat atcgaagaga tatcggacgt aaggtggcaa        60
     cgctcgggga ttttggagag tgacagcgaa caagggtaga cgtacaaaga actaaagaat       120
     aaattaatat ttaaataaag tataattaaa ctataaatta cgagttgtta ca               172
//
ID   Gypsy-26_DYa-I repbase;    DNA;    INV; 7415 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DYa_;
KW   Gypsy-26_DYa-LTR; Gypsy-26_DYa-I.
XX
NM   Gypsy-26_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7415
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1838-1838 (2012).
XX
RN   [3]
RP   1-7415
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..1293
FT                 /product="Gypsy-26_DYa-I_1p"
FT                 /translation="MGKSWLYSLKRDDFPAIASALGIKLEGLVEDMRRTLS
FT                 EFIQQTTDEPETVAILEALEREYARRPAPEIKVTGVEGLVGSLDVHSMMEA
FT                 SGSRPERQETGSERRESSRERRERREPSRDRRDIARVAPPDYAKVAKQVRE
FT                 WSFRYDGHDKPLEFLEQVEWSAMTYGLDINQIPRAMPELLKGRALKWFIAN
FT                 NRFWETWAEFIHSFQEFFLPRGFMTKLADQVRQRKQRHGECFKDYMVDMQT
FT                 LMRPLGMSHKEILERIRENSTPALRMFVRPYECRNLDALMVLADEFEELDS
FT                 QRERFESERTQRARHQGDFQRGEQHTVCRRCQEEPTGPSRHETNGRGPDPA
FT                 RRGFVLNPAQACHRCGSQEHWMRECRNRPITFCWSCGRIGRKTAECCPRSG
FT                 NATRPQPQRGNQGSQGAAPQN"
FT   CDS           1212..4394
FT                 /product="Gypsy-26_DYa-I_2p"
FT                 /translation="MLPKIGKRHATPASEGQPGFARCCPSKLMGKLKAEER
FT                 QLSATVLINGMEVKATMDTGATASFISEELADRLRAVGEVVATRREVRMAD
FT                 GRFEEVTSLLEVDVGLGERTVRMQLLILHNIIDALVLGWDFLTKVGARIAC
FT                 AGLSATIPAGQLVRSNAREKLSVAVVERTTDFAEEDIDGFLKAELADLGRV
FT                 QGTSTVAVHRITMKDDQPVKQRYYPKNPKMQVEINAKVDELLQKGCIEPSR
FT                 SPYSSPIVMVKKKTGQWRLCVDFRQINAKSVKDAYPMPMINYILDQLREAK
FT                 YISSLDLKDGYWQIPLAEASRQYTAFTVPGKGLFQWKVMPFGLHSASATFQ
FT                 RALDQVIGPEMMPHAFAYQDDIIVIGRTLQEHMRNLKEVFRRLRAANLKVN
FT                 ADKCKFFRKELQYLGHRVTDQGIGTDPEKVAAIAQLKPPGNVKELRQYLGV
FT                 ASWYRRFVPDFATLVQPLNALLKKQAKWEWTDAHQEAFEAVKTRLVADPIL
FT                 ACPDFTRTFVLQTDASDYGLGAILTQHSEQGERVISYSSRSLNGAEKNYSA
FT                 TEKECLAIVWAVRKLRPYLEGYHFKVITDHMALKWLNSIESPSGRIARWAL
FT                 ELQQYDFEISYRKGQLNIVADALSRQPLQETSRRITEEGQPDEQHECKWID
FT                 GMRRKMKQEPQKYPDYLEEAGRLYRHIPHRAGHEDVVSWKLCVPTGERQRV
FT                 MAENHDMPTAGHLGSRKTMARVAARYHWPGMHRDVRKYVRNCESCMKYKPN
FT                 QLQAAGKMLTQVPEEPWATVCADFVGPLPRSKHGNSMLLVLVDRFSKWTEI
FT                 VPMRRATTETLRKAVRERIVARYGVPKVMITDNGVQFTSRAFKRFLEELGV
FT                 KHQLTAPYTPQENPTERANRTVKTMIAQFTGADQRTWDENWPELQLAVNTS
FT                 VAETTGYSPAFITQGREPRLPNALFDEQTAGTGRCPQTPAENAGKLKEIFE
FT                 LVRRNMEKAAQDQARHYNLRRRPWKPKVGETVWAKEHHLSKAAEGFAAKLA
FT                 PKFDGPFKIKKFTSPVICILEHATTKKTKTAHVSDLKPGSAGAGGPEDNES
FT                 DTPQ"
XX
SQ   Sequence 7415 BP; 1946 A; 1927 C; 2501 G; 1040 T; 1 other;
     tctggcgccc aaccgtgatt gtcctgatca aaaagaacag aggagaagat ggggaaatcg        60
     tggctataca gcctgaagag ggatgacttt cccgcaatag caagcgccct aggcattaag       120
     ctcgaagggt tggtcgagga tatgcggagg acgctgtccg aatttatcca gcagaccaca       180
     gacgagcccg aaacagtcgc catactcgag gcgttggaga gggagtacgc aagaagaccg       240
     gccccggaga tcaaagtcac cggtgtggaa ggcctggtgg ggagcctcga tgtccacagc       300
     atgatggagg ccagcgggag cagacccgaa aggcaggaaa ccgggagtga acggcgggaa       360
     agcagccgcg agagaaggga gaggcgggag cccagccgcg atcggcgaga catcgcaagg       420
     gtagcccctc cggattacgc aaaggtggcg aaacaggtgc gggagtggag cttccggtac       480
     gacggccacg acaagccatt ggagttcctg gaacaggtgg agtggtcagc aatgacgtac       540
     ggcctggata tcaaccagat cccacgagcg atgccggaac tgctgaaggg cagggcccta       600
     aagtggttca tcgccaataa caggttctgg gagacatggg cagagttcat ccatagcttc       660
     caggaattct tcctgcccag aggcttcatg acgaagttgg cagaccaggt caggcagagg       720
     aagcagcggc atggcgaatg cttcaaagat tacatggtgg acatgcagac cctaatgcgg       780
     cccttgggga tgtcccacaa agagatcctg gagaggataa gggagaacag cactccggct       840
     ctacggatgt ttgtccgccc atacgagtgc cgaaacctgg atgctctgat ggtcctggcc       900
     gacgaattcg aggaactgga ctcccagagg gagcggttcg aatcagagcg gacccaaaga       960
     gcccgccacc agggggattt ccaaagaggg gaacagcaca cggtgtgcag aaggtgccaa      1020
     gaggagccca caggaccgtc gaggcacgag acgaacgggc gaggaccaga cccggcgcgg      1080
     cgggggtttg tgctaaaccc agcgcaagcc tgccataggt gcggaagcca ggagcactgg      1140
     atgcgggagt gtcggaaccg accgatcaca ttttgctggt cgtgcgggcg aatcggccgg      1200
     aagaccgcag aatgctgccc aagatcggga aacgccacgc gaccccagcc tcagaggggc      1260
     aaccagggtt cgcaaggtgc tgcccctcaa aattaatggg caagctgaag gcggaagaaa      1320
     gacaactgtc cgccacagtg ctcataaacg gaatggaagt taaggccacg atggacaccg      1380
     gagccacagc aagctttatt agcgaagagt tggcggacag gttgcgggca gtgggagagg      1440
     tcgtagccac gagaagagag gtgcggatgg ctgatggacg gttcgaggag gtcacatcgc      1500
     tgctcgaagt agacgtagga ctgggagaga ggaccgtaag aatgcaactg ctaatcctcc      1560
     acaacatcat cgacgcgcta gtactgggat gggatttcct aacgaaagtt ggagccagga      1620
     tagcatgcgc gggtctgagc gcaacgatac cggcgggaca gctggtgcga agcaatgcac      1680
     gcgagaagct gtcagtggca gtagtggaaa ggacgaccga ctttgcggag gaagatatag      1740
     acggcttcct gaaggcagag ctagcagatc tgggaagagt ccaagggacg tcaacggtgg      1800
     cggtgcacag aatcacgatg aaagacgatc aaccggtcaa gcagcgctac tacccgaaga      1860
     acccgaagat gcaggtggag atcaacgcca aggtcgacga gctgctgcaa aaggggtgca      1920
     tcgagccgtc taggagcccg tacagctctc ccatagtgat ggtgaaaaag aagacgggtc      1980
     agtggcgctt gtgtgtggat ttccgccaaa taaacgcaaa gtccgtgaag gatgcgtacc      2040
     cgatgccaat gatcaactac attctggatc aactaaggga ggcgaaatac ataagcagtc      2100
     tggatttgaa ggacgggtac tggcagattc cgttggcaga agcaagtcgg caatatacgg      2160
     catttacggt gccgggaaag ggcctgttcc aatggaaagt aatgccgttc ggactgcact      2220
     ccgcatcggc aacgttccag cgggcgttgg accaggtgat aggaccagag atgatgccac      2280
     acgcatttgc gtaccaggac gacataattg tgatcggacg gacactacaa gagcacatgc      2340
     gtaacctgaa ggaggtgttc cggaggctga gggcggcaaa cctgaaagtt aacgcagata      2400
     agtgcaagtt ctttcgaaag gagctacaat acctgggcca ccgggtgacg gatcagggca      2460
     tcggaacgga tccggagaag gtagcggcaa tagctcagct aaagcccccg ggaaacgtta      2520
     aggaactgcg acagtatcta ggagtggcgt cgtggtacag acgttttgta ccggattttg      2580
     caacgttggt acaaccactg aacgcactcc taaagaaaca agcaaaatgg gaatggacgg      2640
     acgcccacca agaagcattc gaggccgtca aaactaggtt ggtcgccgac ccgatcctgg      2700
     catgccccga cttcacacgg acgttcgtgc tacagacgga cgccagcgac tacgggctgg      2760
     gcgctatcct cacacagcac tccgagcaag gcgagcgggt gatatcctac tccagcagat      2820
     cgctgaacgg agcggagaaa aattattctg caacagagaa ggaatgttta gcaatagtgt      2880
     gggctgtcag gaaattaaga ccatacctgg agggctacca tttcaaagtg ataacggatc      2940
     acatggccct gaagtggctg aacagcatcg agagtccgtc cggaaggatc gcgagatggg      3000
     cattggagct ccaacaatac gacttcgaga tttcgtacag aaagggccag ctgaacatcg      3060
     tcgcggacgc cctatcgagg cagccgctgc aggaaacgag ccgcaggata acggaagaag      3120
     ggcaaccgga cgaacagcac gagtgcaagt ggatagatgg gatgcggagg aaaatgaagc      3180
     aggagcccca aaagtacccg gactacctgg aagaggccgg ccgattgtat aggcacattc      3240
     cgcaccgggc aggacacgag gatgtggtgt catggaagct gtgtgtacca accggggaga      3300
     gacagcgcgt catggccgag aaccacgaca tgccgacggc gggacacctg ggaagtcgga      3360
     agactatggc gagggtggca gccaggtacc actggccagg aatgcaccga gacgtaagga      3420
     aatacgtaag gaactgcgag agctgcatga aatacaagcc caaccaactg caagcagccg      3480
     ggaaaatgct gacacaggtg ccggaagaac cgtgggccac cgtatgtgcg gactttgtgg      3540
     gcccattgcc gaggtcaaag cacggcaatt cgatgctgct ggtcctggtg gacaggttct      3600
     ccaagtggac cgagatcgtt ccgatgcgca gggcgaccac cgagacgctg cgaaaggccg      3660
     tgcgagagcg gatagtggcc aggtacggag tgccaaaggt catgatcacg gacaacggag      3720
     tccagttcac gagcagggca ttcaagaggt ttttggagga gctgggtgta aaacaccagc      3780
     tcacggctcc atacactcca caagaaaacc cgaccgaaag ggccaacagg accgtgaaga      3840
     cgatgatcgc gcagttcacg ggggccgatc agaggacgtg ggacgagaac tggccagagc      3900
     tgcagttggc ggtgaacacg agcgtggcag aaaccactgg atactcgccg gcatttataa      3960
     cgcagggaag agaaccgagg ctgccgaatg cgttgttcga cgaacagacg gccggaacgg      4020
     gcagatgtcc acagacgccg gcggaaaacg cgggaaaact gaaggagatc ttcgaactgg      4080
     tgcggaggaa catggaaaag gcagcgcagg atcaggcgcg ccactataat ctccggagga      4140
     ggccgtggaa acccaaggtg ggcgaaactg tgtgggccaa ggagcaccac ctatcaaaag      4200
     cagctgaggg cttcgcggca aaactggcac cgaagttcga cgggccgttc aaaataaaga      4260
     aattcacgtc gccggtgatt tgtattttgg aacacgccac aacgaagaag acaaaaacgg      4320
     ctcatgttag cgatttgaag ccgggaagcg cgggcgccgg cgggccagag gataacgaga      4380
     gcgacacacc acaataaacc ctttcgcgaa gaagggggga agacgataca gggtatcgag      4440
     aagtcggaag tcgcagttaa tcactcacac acacacacac acaaaaggcc cgttggagcg      4500
     cgagagcggg acagggaggg tacacagccg gaaaaccgtt aacggctaac gcacacaatt      4560
     gcgaattccg taggaggcag gtgcacggag gagaatcccg ttaccggtac aggccccgcg      4620
     gaataacggc ggaaaggagt aaagcgaaaa ccgaggtttc gtcgcggcgg aaaaagcgag      4680
     agtcggtctt ttgaaatcaa gtcggcagga tgaccacacg cagcgcgcag agcaaccggg      4740
     aggtgaggga gaccggcact ggggaacagc ccggagcgac atggagggcg gacgttgagt      4800
     cctatctcca gcttctggcg tcacccctgg tgtcgcgatc cccatccccg gttccggagg      4860
     acacggagga ggtgcccgac acggagctgt cggaggacga ggcgatggag gcgaatcacg      4920
     aggagcccgt ggattgcgtg tccctctcct cagagagcga ggaggacgac gggggtgaga      4980
     ccgtcacccc ggtggtatcc tcggaggagg acgaaggagg ccggagcgcg aaggcgagga      5040
     tggcctaccg cagcgtgcgg cgggcgacgc agggccacgg gcggatcagg ctgggagacg      5100
     cgatgccgtc ggaggacctg cgggagatgc gcgagttcgc ggacgcgcgg aacgccacgc      5160
     tgcgacggtt cgagcggatg gtggtggagc ggaaggcagc cgccgccaag gccgcgtggc      5220
     aaaaacgcct ggcggagtgg caggaggagg aggaggcgct gtgggtaccg cagccaccga      5280
     cgccgcagcc acagccgccg ccaccggcgc agtcgcagcc accgttgcca ccgtcaccac      5340
     cgccgacgtc gcagccaccg ccaccatggc agccgccgtt gccacgggca ccgccgccgc      5400
     cgtcgcagcc gccgccaccg ccaccaccaa cgcagcagca gcagcagcag ccgcagccgc      5460
     cgacaccgga gccgcagcac ccggggatgc cgcagccacc gacgccgcaa ccgcagccgc      5520
     cgttgccgcc gacgccgcca ccggcgcagc cgcagccacc accgccacca cgcacgccaa      5580
     caccgccgcc agcaccaccg acgccgccgc cgccgcgcac gccgacgccg ccaccccagg      5640
     atgaggaggg gccccggtgc gagcggcagc agtcctggga tgtggaccag gcgcacgtcg      5700
     cgcagacgct gcgcacgatc ggcatgggcg gccgccggtg gcatcagcaa acggtgacgt      5760
     ggacatggcc cgcaccgccg gaggacacgc cggaggcccg cgtgtgggag gaggtgggcg      5820
     cggtcgggtg gaggccaatg gaaacacgag cgcgcgaccc gcgagttcgc gcacggatgg      5880
     aggacgcaga ggagaacccg gagaagggtc cgtgggtgtg gcccgcaccg ccaccaccga      5940
     aactcgcgcg gcaggagtca tgccccgagg cgagacctcc accgcagcga ccctgcctcc      6000
     gcaggcagca gtcgctgggt gagaagccgt ggcgagaggt cgagcgcgcg gagtggccac      6060
     csaaggtggt cgaggaggcc gaggcccagg cgggcagacg gcacaaggac cgctgggcga      6120
     aactgttcgt gctggacggc cagcggttcc gcctgaaggt gcgacgcggc ggcgatatca      6180
     gggtgtacgt accccaataa aaaggaaaaa aacgaaaacg acgactgaga gttgtgggtc      6240
     aggggagggt aagggcactt tgttgctcac aataaaaaaa taggtgcgag tcatctgcag      6300
     cagccagcag gcacgcgggc cagcaatcgg acgcggggcc aggcacgcgg gccagcaatc      6360
     ggacgcgggg ccaggcacgc gggccggcaa atcgacgcgg ggctgccgca ggcgcggaga      6420
     cggcatgttg gcctccaagg cgcttgggtc caggggcagc cgcccggagc atggaggggc      6480
     gatcatcggg gtccctgcca aagggcctcc agggcgcctg tgtccagggc cagcaaccct      6540
     ggagcatcaa gggccatcat atcgtgtggg aggagctaag acaaaaaaga gaggatgagt      6600
     aaatatggcg gtttttacaa taaattccgt aaacttacct ccattgagct gcaactccga      6660
     aatccacgtg cttggagaaa atcgggatgg gggcgctacg ataatagcgg tcgatcgata      6720
     gtgagatcga tagggaacaa aaatactgga tattaaattg attttcaaca cgctgccaca      6780
     ctattggcag caatcggcac gacatcggaa catcggaaca ggaagtggca acgccggtcg      6840
     ccaatatcga taactcgatc gcgcaatcag cgatgggaca atatcggtag gaatcggagg      6900
     tggcaacgcc ggtcgccaac atcgataagt cgatcatggt gagtatcggt ggagttgcca      6960
     gagatgcgaa gcgaggaaga ggcggcaaat ttaaatgcgg agctggtgac gagaagcgga      7020
     tggcaacaga tacaggaggc tggagaaggg cgcaaagatc aagatgccga gtcgagacgt      7080
     cgaacgacag ggtctactag gctgaggctg ccgggctgag atcaaggagg cgcaggtcga      7140
     cgtgaggaga atggaacggt gaggatcaag atgccacgtc gagatgctcg aatacgctga      7200
     gacgtaaggc tgcgatcagg aaggcgcaag gaggttcaag atgccaagtc aagacgctga      7260
     acgacggggt ctaataagct gcgactgcca ggctgagaac aaagggcgca gggtcgacga      7320
     gaggtgattg aggaagttgc ccatgcaagg agacaccgaa gcagaggacc gccggaagca      7380
     gcattctttt gaaatcttcc gaagaaaggg ggaga                                 7415
//
ID   Gypsy-26_DYa-LTR repbase;    DNA;    INV; 1053 BP.
XX
AC   .
XX
DT   06-APR-2011 (Rel. 17.09, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_DYa_;
KW   Gypsy-26_DYa-LTR; Gypsy-26_DYa-I.
XX
NM   Gypsy-26_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1053
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1839-1839 (2012).
XX
RN   [3]
RP   1-1053
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1053 BP; 300 A; 259 C; 328 G; 162 T; 4 other;
     tgtgaggagt cttaaaactc cccacaaatc cgggtgtagg agatcggcat agcaacagcg        60
     aagacggctg gaatgcgaga ggagccaagg gcggtcaggt cgaacggtaa ataatggacc       120
     ttggaccccg gcaaagcgga gagaccgtga attaacggta ccgcgctgga ccttggactc       180
     gaacccgcca agggcgtaga ggtcatacgg taacggtgcg gactttggac aggcacaaag       240
     aggacgcacc gtgaactaac gggacatgtt tggaccttgt acccgagcga gccgtgtgca       300
     aaacgggaaa taacgggatt cccgcagccg atataaggga cggcgccggc gcagctcggg       360
     acagtcaaga agaagtacgc gagggcccta cagccatacg gaaagcgaag aagtacgcga       420
     agagtcgata ccgagtgaca gtgaaacgac aggaacacaa gtgcgtcaag cgggcatcca       480
     gagtggatcg ccgcacgtga agatcagcga aggacgagcg aacacaagga cctagcgtgg       540
     tcagaaaggg acagtggagt cagtggtcgc aacggtggtt cggagggaag cgctagctta       600
     actcgtggac gatacaccct gccccataac atcctaagcc ccggtcgagc ccgcaggcta       660
     tccttcggcg aggacctagc gtagtcagaa agggacggtg gagtcagtgg tcgcaacggt       720
     ggttcggagg ggagcgctag ctcaactcgt ggacgataca ccctgcmcca taacatccta       780
     agccccaggc gasscggtac ggatccccgt cggcagcgac gcaggcgtac gacggaagga       840
     cgacgaggga gcaacgacgt gcawccagcg gcgaggatca ccgaatcctg gtcaacaagt       900
     gacgataaat aaaagtggtt aaatctgaga atctgtcttc ttcttggtcg ggcaatcaca       960
     caaatcataa atttggtggg acgaacaaac aaaatctctg agctagccgt tgcatttcgt      1020
     agcgagccga aataagaaaa acagttcgtt aca                                   1053
//
ID   Gypsy-26_HeAr-I repbase;    DNA;    INV; 5475 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5475
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5574-5574 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4791
FT                 /product="Gypsy-26_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEETSGISERHRRKRQRNRSRNSRSRSSSNRERRHRK
FT                 QRSSDVSAKCARSVARSTPKLSSRRRHRSSSRDQYRSRSSSYEENRRHRTR
FT                 RSQSRRRGRRSRGESSGERHTPPAPSHVSTPNILNNDTQAFFANLVEALTN
FT                 NRPQGNKFPMLGNVIPDFDPMNKNQTILMWINKVDECARLYGWGDDQIIHY
FT                 ALPKLTGIAKTWYQALPSMSYSWSEWKIKLQESFPSSDDYAELLTEMLSKR
FT                 VKFNDSLEHYYYEKINLLNRCEIAGKRAVDCLLYGIEDRSLRLGAKAAKCN
FT                 EPEQVLKYFLSIKQQSREPDRPRTNFDKRNVTNFSLPNNNYRQTPNSNETK
FT                 TPKPQNNMPIVCFNCNEPGHFSSRCTKKILKCNVCTRLGHLSINCPRLPSD
FT                 STNKHDLPKDKDVMRVETNNSGDSKYLLYLKLNGEVIQGYVDLGSQCTLIR
FT                 HSEAMRLGITWSDKNLPSMRGIGNSIVTPLGVSNVNIEIQNIVEEVNAYIV
FT                 DDTVIKYSVLIGHSFTEKPGIVITKTTNSLIFARDHTFKLQLCLTVDIVIP
FT                 PKEMVALPCTSTIDYSGVVRVSGSLRGAPKGEYYLMPGEYDIENGNSRILV
FT                 QNFCDSSVTLKKGTLVTRAVCTNDCLNIRSLNFDETDPSFTLNYGKQLSED
FT                 EVDRLKELLKRYETCFSENLKDLGYTDVVQMEIDLNDSQPVVYRPYRLSYP
FT                 ERRQVQSMVQEMIDAGIVCESNSPYASPVLLVKKKTGESRLCVDYRALNNK
FT                 TKKEHYPLPIIDDQLDRLSGNSLFVSLDLASGYYQIPVEEKSQNKTAFVTP
FT                 DGQYQFKRMPFGLANAPSVFQRTMNKILSKVNYTIIYMDDVLIPSQSFDQG
FT                 MNRLEEVLQIFKDSGLTLKIKKCNFFYTELEFLGFHVSGEGIRPGTRKTLA
FT                 IENFPTPQNVHDVRRFIGLASFFRRFVKDFALIARPLTDLLKSKFQWKWSS
FT                 VEAESFSMLKAKLVERPILALYDPALETEVHTDASKFGIAGILLQRGADGL
FT                 LRPVAYYSRKTTPDEQKFHSFELETLAVIASLNRFRVYLLGVRFKIVTDCN
FT                 ALRTTLTKRDLIPRISRWWIQLQEYNCEIEYRPGSRMAHVDALSRGPVSEP
FT                 TDTDTEHIIDVLHIDVRDWIATVQSDDSEIKRIRDILEDDKTKLVADVRNN
FT                 YQLKGSYVYKILDEGLRWVVPRGCRWQLLRMNHDDVGHFGFEKTLNRLRSA
FT                 FWFPKMRRFTKKYVSACLECAHHKAPGGPKEGLLHPIPKLDRPFHTLHADH
FT                 LGPFIRSKRGNMYLLVIIDAFTKFINIRAVKDTKTTTAIKVFKEHFSFFGV
FT                 PSRLITDRGSCFTSAKFKNFMNELKIKHILNAVATPRANGQVERFNRTITD
FT                 ALSAKCHGGNDNIWDDFVGDIQLGINTTINKTTGKSPSELLFGCKLMNASE
FT                 NMLTDVITETTERIDGEALVELRSNARARIEKQQEYAKNQFDKHRKRGTKY
FT                 NVGDLVRIERTVIDKNHVGKSQKLIPKFQGPYRILKLLPNDRFLVEDTPLT
FT                 RRGKKRYENVVALDKIHPWMNFKGYSSESTDSEQSDDTHVEVDKE"
XX
SQ   Sequence 5475 BP; 1747 A; 976 C; 1242 G; 1510 T; 0 other;
     tctcagaagt gggataagcc tattacgccc acgattttga agaaattact taaaaatcaa        60
     ccacgtgttt tggtgtgcac ggagattgcg agtatacttt gagtaaaaat ggaggaaact       120
     agtggcatta gcgagcgcca tagacgtaaa cgccaacgca accggagccg aaactcaaga       180
     tctcgttcaa gcagtaatcg cgagcggaga catagaaagc agcgatcgag cgatgtttcg       240
     gcgaaatgtg cgcgcagtgt ggcccgcagt actcctaaac tatcttcgag gcggagacat       300
     cggagtagca gtcgtgacca gtatcgaagt cggagcagca gctacgagga aaatcgtcga       360
     catcggacca ggcggagcca gagtaggaga cgtgggaggc gaagccgcgg tgaatccagt       420
     ggtgagcgac atacacctcc agcgccgagt catgtgagta cccccaatat tcttaataat       480
     gacacgcaag cgttttttgc caatttagtg gaagccttaa cgaataatcg acctcagggc       540
     aataaatttc ctatgttggg taatgtgatt ccggacttcg accccatgaa caagaaccag       600
     accatactta tgtggattaa caaagtggat gagtgtgcta ggctttatgg gtggggtgat       660
     gaccagataa tacattatgc gttaccaaaa ctaacaggga ttgcaaagac ctggtatcag       720
     gccctcccat ccatgtctta ctcttggtcc gagtggaaaa ttaaactcca ggaatcattt       780
     ccaagtagcg acgattatgc cgaattactc accgagatgt tatcgaaacg tgttaaattc       840
     aacgattctt tagaacatta ttattatgag aaaattaatt tattaaatcg atgtgaaata       900
     gccggtaaac gtgcggtaga ctgtctttta tatggaattg aggataggtc attacgacta       960
     ggcgcgaagg cagcaaaatg taacgaaccg gagcaagtct taaaatactt tttatcaatc      1020
     aagcaacagt ctcgtgaacc tgaccggcct agaacaaatt ttgataaacg taacgtcact      1080
     aacttttcct tacccaacaa taattatagg cagactccaa atagcaatga aacgaagacc      1140
     cccaaacccc aaaataatat gccaattgta tgttttaact gcaatgaacc tggacacttt      1200
     agttctagat gcacaaaaaa gattttaaaa tgtaacgttt gcaccagatt aggccatttg      1260
     tctatcaact gtcccaggtt gccttctgac tcgacaaata aacatgattt acccaaggac      1320
     aaagatgtca tgcgtgttga gacgaacaat tcaggcgata gcaagtattt attgtatttg      1380
     aagctaaatg gagaagtcat acaaggttac gtagatttgg ggagccaatg tacgttgatc      1440
     cgtcatagtg aggcaatgag gttaggaatc acatggtctg ataagaattt accgagtatg      1500
     cgaggtatag gtaatagtat agtaacaccg ttaggcgtct ctaacgttaa catcgaaatt      1560
     caaaatattg tggaggaagt caacgcgtat atcgttgatg atacggttat aaaatattct      1620
     gttttaattg gacatagttt taccgagaaa ccaggtatag ttataacgaa aacaacaaac      1680
     tcattgatat ttgcccgtga tcatactttt aaattacagt tgtgtttgac ggtcgatatt      1740
     gtgataccac ctaaggaaat ggttgcatta ccgtgtacct caacaataga ttactcaggt      1800
     gtggttcgtg ttagtggttc cttacgtggt gcgccaaaag gtgaatatta tttgatgcca      1860
     ggtgaatacg acatagaaaa tggaaatagt cgaatattag ttcaaaattt ttgtgatagt      1920
     tcagttacct taaagaaggg cacactcgtt acgcgagctg tatgtacaaa tgactgttta      1980
     aatatacgtt cattgaattt tgacgaaact gaccctagtt ttacactcaa ttatggcaaa      2040
     caactcagtg aagatgaagt tgatagactg aaagagttac ttaaaagata tgaaacatgt      2100
     ttctcggaaa acctaaagga cttagggtac actgatgtag tacaaatgga gattgattta      2160
     aatgactcgc aaccagtagt ttaccgtcct tatagactct catatccgga gcgtaggcaa      2220
     gtccaatcta tggttcaaga gatgatagat gcaggcattg tatgtgagtc aaattcgcct      2280
     tacgctagtc ctgtcttact agtgaagaaa aagactggtg aaagcaggct atgcgtcgat      2340
     tatcgtgcgt taaataataa aactaagaag gaacactatc cgttacctat cattgacgat      2400
     caacttgaca ggttatctgg taattctctg ttcgtaagct tggacctcgc gtctggctat      2460
     taccagatac ctgtagaaga aaagtctcaa aacaagactg cgtttgtaac tccggatggg      2520
     cagtaccaat ttaaacggat gcccttcgga ttagcaaacg ctccttctgt gttccaacga      2580
     acaatgaata aaatcttgtc gaaggtcaac tatacgatta tttacatgga cgacgtactt      2640
     attccttcac agtcgtttga tcagggtatg aaccggttag aggaggtact tcaaatcttc      2700
     aaagattccg ggcttactct taaaataaag aaatgtaatt tcttctatac cgagttagaa      2760
     tttttaggat ttcacgttag tggcgaaggt atacgtcccg ggacgcgtaa gacgttagct      2820
     atagaaaact ttccgactcc gcaaaacgtt cacgacgtca gacggtttat cggtttagct      2880
     agttttttcc ggaggtttgt aaaggacttc gccctgatcg ctcgtccatt gaccgaccta      2940
     ttaaagtcta aattccaatg gaaatggagc tctgtcgagg cagaatcgtt tagtatgtta      3000
     aaggcaaaat tagttgagcg ccccatattg gctctgtatg atcctgcttt agaaaccgag      3060
     gtgcacacgg atgcctcaaa atttggaatc gcagggatcc tcttgcaacg gggtgcagat      3120
     ggtttactta ggccagtagc atattacagt cggaagacaa caccagatga gcaaaaattt      3180
     cattcttttg aattggaaac tttagctgtc atcgcatctc ttaatcgttt tagagtctat      3240
     ttactagggg taaggtttaa gattgtcacc gactgtaatg cgctgcgtac taccttaact      3300
     aagagagacc ttataccacg aatttcacgc tggtggatcc agttgcagga gtataactgt      3360
     gagattgagt acagacccgg ttcgcgcatg gctcacgtag atgctctcag tcgtgggcct      3420
     gttagtgaac ctactgatac cgataccgag catattattg acgtgttaca catagacgtt      3480
     cgtgactgga ttgctacagt acaaagcgat gatagtgaga taaaacgtat aagagatatt      3540
     ttagaagatg ataagacgaa acttgtagct gacgtacgaa ataattacca gttaaagggt      3600
     agctatgtgt acaaaatttt ggacgaaggg ctgcgttggg tagttccgcg tggttgtagg      3660
     tggcaattgt tgcgcatgaa ccatgatgat gtgggacact ttggattcga gaaaacctta      3720
     aatcgtctga gaagcgcgtt ttggtttccc aaaatgcgta ggttcactaa aaagtacgta      3780
     tcggcttgtt tagagtgtgc gcatcacaag gctccgggtg gtcccaagga agggctgctc      3840
     catcccattc ctaagttaga caggccgttc catacactcc atgcagacca tctcggtcca      3900
     ttcattcgtt caaaaagagg caatatgtat ttacttgtta ttatagacgc attcaccaaa      3960
     ttcattaata tacgtgctgt caaagatacc aaaaccacga cggctataaa ggtgtttaag      4020
     gaacatttta gcttctttgg agtcccttcg cgcctcataa cggatcgcgg ttcttgtttc      4080
     acaagcgcaa aatttaagaa ttttatgaac gaattaaaaa taaaacatat cttgaatgcg      4140
     gtagccactc caagagcgaa cggacaggtc gagaggttta ataggactat aaccgacgcc      4200
     ttgagtgcta aatgtcatgg tgggaatgac aatatatggg acgatttcgt aggggacata      4260
     cagctaggta tcaataccac tattaataag acaacgggaa aaagtccctc tgagctattg      4320
     ttcgggtgta aattgatgaa cgcgtctgaa aatatgctga ctgacgtaat tactgaaaca      4380
     acagaacgaa tagacgggga ggcgttagtg gaattaaggt cgaatgctag ggcaaggata      4440
     gaaaaacagc aggaatacgc caaaaatcag tttgataagc atcggaaacg tgggacaaaa      4500
     tataatgtag gtgatttggt taggatcgaa agaacggtga ttgacaaaaa tcatgtaggt      4560
     aaatcgcaga aactcatacc caaattccaa ggcccctatc gaattcttaa actattacct      4620
     aatgacaggt ttcttgtcga agatactccc ttgacgagaa gaggtaaaaa gagatacgaa      4680
     aatgtcgttg cgttggataa aattcatccc tggatgaatt ttaaaggtta tagtagtgaa      4740
     agtacggata gtgaacagag tgatgacaca catgtagagg tagataaaga gtgattcttg      4800
     aaacagatac tttacagaat aatttgatag ttcttggtcg attataaatt aaattaccaa      4860
     caaagaaacg tgtcattatt aaggatgttg tctgatgagc aattagtgca gatacagaat      4920
     ggcttcgaag aaccgaagtc gcacagataa ttgcaagata gtgaataaga ttagatgatg      4980
     cgagtgcaat ctgtcagtga cggtcagtgc agacattgaa tggtgccaag ataacggtgc      5040
     cgcacagatg accatagatt ttgacagatt gtgcaagaaa tagagaatga gaaaatagat      5100
     aatgtatttg aattgtgatt aagatatagc caatgtttat atgagataag atagaataag      5160
     atttcgatga gaacttgaac taaaattgaa ttgtgatact ttaatagatt gtaatatcca      5220
     agtgctataa tcagttatta ataggtagcc gaattgtaat tagagagtcc agagtatgtt      5280
     aagatgaagt caagatattt tgaattgatt acttgattgt gaatagttat aaaaattgtt      5340
     gttaatttag ttttcgaatg aatgagtgtt tacaatgttt tattttattg ttacttatta      5400
     cttaagttga ttatttactc gtcatagtct acacggtgca agtgagagga ctcactttgt      5460
     acaggatggc cgaac                                                       5475
//
ID   Gypsy-26_HeAr-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-296
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5604-5604 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 296 BP; 93 A; 42 C; 57 G; 104 T; 0 other;
     tgtaaggtta attacttaag acgtgggtac tgtcacaaaa tattgcgcaa ggtgtataga        60
     gtataaatat ttgatttagt agctttagtt gacattagta gaaatatccg attatatttg       120
     aataccgaat atgagttagc tatggtaaca ctatgacaga tgtctaactg gcattttgac       180
     attgaaaaga tggtcacttc attttgaacg attgtacaaa tcagttgtgt cgaaataaat       240
     cctttgatat ctctacgatc ctcgtttgat ttctgagata aggccttgat ccttca           296
//
ID   Gypsy-26_LH-I repbase;    DNA;    INV; 5482 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   07-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_LH_;
KW   Gypsy-26_LH-LTR; Gypsy-26_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5482
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 458-458 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [1616-2218] - Reverse transcriptase
CC   Positions [3203-3679] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(54..1037,863..4096)
FT                 /product="Gypsy-26_LH-I_1p"
FT                 /note="Gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MPRWIDYLSKRHAIEELSAHGLRTEGTLDELRKRLRR
FT                 FVSQNPALFATRSTAPSDPSSSMSLEANTPTAGPSTAPEPTVMDHAKVMNQ
FT                 IRKWGLHFDGRDPLAFLERVEELRHGYGYREDQLLLGLPELLRGDALLWYR
FT                 NNCGAWATWAEFRDHLKTQYLPPEYQRQLKRDVQGRHQRSDELFQVYATAL
FT                 LTMMRRAGGYSPRDQVEQLYENMKPGYQLYLQLTETTSISELSVKAAQFEA
FT                 INRRRTDSRPGPSPSAKPAVAAAAYSRSECCWRCKQRGHTRQDCKRPAKXF
FT                 CFRCGKDGVLTRDCHPPSGNAERAGDVAAVAQPDSPVLLALQTTGAYPSGL
FT                 QAPSKEXLFPLWERWGAHAGLSPAVGKRGTGRGRRGRRPARLPLSYNPRPH
FT                 LRVRILGHTRWALLDSGSELSFIDPDTARQCERGSCHSEPTSDQVNLSDGT
FT                 CVAITETIVLPIVLQGRTYHHRFSILPHLGSPVLIGIDLWAKMGLTSPPPP
FT                 PTEPRPSSTNGVINAGLNGRTLNEETRLSEFLNRELPAFEEIKGPTDRVAH
FT                 RIRLKPVAPIKQRYRPRNPAMQAIIDQEVEKMLAEGVIEPSSSAWSSPVVV
FT                 VKKRDGTHRFCIDFRKLNAASDKDAYPLPHIAATLDKLRGSRYLSTLDLKS
FT                 GYWQIPLTPESRPATAFTVPGKGLFQFRVMPFGLHSAPATFQRLLDSVLGP
FT                 ELEPHVLVYLDDIVIASRTFEERLRHLAEVFRRLREAQLRLNPDKCHFCRD
FT                 SLRYLGHIIDRRGIRTDPEKVTAITGWPAPTTLRTTVRKVRQFLGMASWYR
FT                 RFIPNFSTLAAPITRLTKKNARWAWGDAENDSFLRLKEALTSAPVLACPDF
FT                 TRPFLLQTDASSHGLGAVLTQQLNDGERVIAYASRTLNGAERNYSATELEC
FT                 LAVVWGIRRMRGYLEGYRFTVLTDHQSLKWLQQLEAPTDRLGRWLFELQQF
FT                 DFSIRYRRGTQNQVADALSREPQISAINREPTCRWYRRTLARVQAHPTEFP
FT                 DYEIREGRLVRHVLHSLDFSDVPAANQWKRCVPKEQRGDILQRLHDAPAAG
FT                 HLGIAKTIARIAQLYYWPGMFREIARYVRRCPTCLAYKVPQQRPAGDLHAT
FT                 LVTAPGQQVSVDLVGPLPRSTRGYTWLLTTXDRFSKWVEMVPLRQATAPNL
FT                 AREITKRVIYRHGCPQQLISDNGTQFTSRQFRQLLAAFGIEHRNSPAYAPH
FT                 CNPVERANRTIKTMIAQYVKERHRDWDEHIDALQFALNTARHEATGYTPAF
FT                 LTRGRELARPSPEDRGLVTHQGTPEVTRQRLEEAFELARIHLARAFQRQER
FT                 HYNLRRRDWRPQIGDRVWKRDRPLSNRGEAFAAKLAPKFIGPLTVRKIVSP
FT                 VIVDLRDARGKWHRHVHVQDLKPAPTDTAEQAGEREKEEKDRP"
XX
SQ   Sequence 5482 BP; 1257 A; 1814 C; 1504 G; 898 T; 9 other;
     tggcgcccga acagggacct gaccgtagga agtccaggct ggtataaaat ttgatgcccc        60
     ggtggattga ttacctgtcc aaacgacacg cgatcgagga actgtccgcc cacgggttac       120
     gaaccgaagg taccctcgac gaattacgga agcgactccg gcgctttgtc agtcaaaacc       180
     ccgcgttatt cgcgacacgc agtaccgccc cgtccgatcc gagtagcagc atgtcgctgg       240
     aagctaatac ccctaccgct ggcccgtcca ccgcacccga accgaccgtg atggaccacg       300
     ctaaggtcat gaaccagatc cgaaagtggg gcctacactt cgatggaaga gatcccctcg       360
     ctttcctcga acgggtcgag gagctacgac acggatacgg atatcgggag gatcagctgc       420
     tgctggggct cccggaactg ttacgaggcg acgcactcct gtggtacagg aacaattgcg       480
     gcgcttgggc cacgtgggcc gaattccgcg accacctcaa gactcagtat ttacccccgg       540
     agtatcaacg gcaactaaag cgtgacgtac agggccgtca ccagcgctcg gacgaacttt       600
     tccaagtcta cgccaccgca ttactaacaa tgatgcgccg ggccgggggt tattcccctc       660
     gggaccaagt ngagcagctg tatgagaaca tgaagcccgg ttaccagctg tatctccaac       720
     tcacggagac gaccagcata agcgagctaa gcgtaaaggc cgcccagttt gaggcgatta       780
     accggcgccg caccgactcc cgtccaggac catcgccgag cgccaaaccc gccgtngccg       840
     ccgccgccta cagtcggtct gagtgctgct ggcgctgcaa acaacggggg catacccgtc       900
     aggattgcaa gcgcccagca aagaanttct gtttccgctg tgggaaagat ggggtgctca       960
     cgcgggattg tcacccgccg tcgggaaacg cggaacgggc cggggacgtc gcggccgtcg      1020
     cccagcccga ctccccttaa gttacaatcc ccgaccgcat ctacgagtta ggatcctggg      1080
     ccatacccga tgggcactgc tcgattccgg atccgagctg tcgtttatcg accccgacac      1140
     agccagacaa tgcgaaaggg gttcgtgcca ctcggaaccg accagcgacc aggtcaatct      1200
     gtccgacggg acttgcgtcg ccatcaccga aaccatcgta ctaccgatag tgcttcaggg      1260
     gcggacctat caccaccgct tctcaatatt accacacctg ggcagcccag tcctgatcgg      1320
     gatcgacctt tgggccaaga tggggctcac ctcgccccct ccaccaccga ccgaaccacg      1380
     accaagctca accaacggcg tcatcaacgc cggcctcaac ggccgcacgc tcaacgaaga      1440
     gactcgtctg agcgaatttt taaacagaga attgcccgcg ttcgaggaaa taaaggggcc      1500
     taccgaccga gtagcacacc gcatccgcct aaaacccgtg gccccgatca aacaaagata      1560
     tcggcctcgg aatccggcca tgcaggccat catcgaccaa gaggtcgaaa agatgctagc      1620
     agagggcgtc atcgagccct ctagtagtgc atggagctct ccagtggtgg tggtcaaaaa      1680
     gagagacggg actcaccgat tttgcatcga cttccgcaag ctcaacgccg cctccgacaa      1740
     agacgcctat ccgttgccgc acatagcggc cacattagac aagctccgag gatcccgata      1800
     cctttccacg ttggacctca aaagcgggta ttggcagata ccgttgacac cggaaagtcg      1860
     cccagcgact gccttcaccg tacccgggaa gggtttattc cagtttagag taatgccttt      1920
     cggcttacac tcggcgcccg ccacattcca gagattgcta gactcagtct tggggccgga      1980
     actagagccc cacgtcctag tatatctaga cgacattgta atcgccagcc gtaccttcga      2040
     ggaacgcctc cggcatctcg cggaagtctt tcgccggcta cgagaggccc aactacggct      2100
     aaaccccgac aaatgtcatt tctgtcgaga cagcctccgg tacctcggtc acatcatcga      2160
     ccggcggggt atccgtaccg atcccgagaa ggtgaccgcc atcacgggat ggcccgctcc      2220
     tacgaccttg cgtacaaccg tacgcaaggt tcggcagttc ctgggcatgg cgtcgtggta      2280
     ccgacggttc ataccgaact tttcaacctt ggccgcccca atcacgcggc tcacgaaaaa      2340
     gaacgcacga tgggcatggg gggacgcaga gaacgactca ttcctccgcc tcaaggaggc      2400
     tctcacgtcg gccccagtac tggcctgtcc ggattttacc agaccattcc tgctccagac      2460
     cgacgcaagt tcgcacggtc tcggagccgt gctgacgcaa cagctcaacg acggggagcg      2520
     cgtaattgcg tacgccagcc gtacgctcaa tggcgccgag cgaaactaca gcgccactga      2580
     attagagtgc cttgccgtag tctggggcat ccgccgaatg cgtggctatc tggaggggta      2640
     tcggttcacc gtacttacgg atcaccagtc cctgaaatgg ctgcaacagc tagaggcacc      2700
     caccgaccgc ttgggacgtt ggttgttcga actacagcag ttcgacttca gtatccggta      2760
     ccggcgcggg acacaaaacc aagtggcaga cgcgttatcc cgggagcccc aaattagcgc      2820
     gattaaccgc gagcctacct gccgatggta ccggcgaact ctcgctaggg tgcaggctca      2880
     cccgacggaa tttcccgatt acgagatccg ggagggacgt ctcgtccgcc acgtgttaca      2940
     cagccttgat tttagcgacg ttcctgccgc aaatcagtgg aagcgatgcg tccccaagga      3000
     acaaagaggg gacatcctac agcgcctaca cgacgctccg gcagccggtc atctcggcat      3060
     agcgaaaacg atcgcccgca ttgcccagtt atattactgg cccgggatgt tccgggagat      3120
     cgccagatac gtccgccgct gccccacctg cttagcatat aaggtgcccc agcagcgacc      3180
     cgctggggac ctgcacgcca cgctagtgac cgcacccggg cagcaagtgt ccgtcgactt      3240
     agtgggacca ctgccccgat caaccagagg gtatacctgg ttactaacaa canaggaccg      3300
     attcagtaaa tgggtggaga tggtgccatt acggcaagcc acggccccaa acctggcccg      3360
     cgagatcacc aagcgagtca tttaccgaca cgggtgcccc cagcagctaa tatccgacaa      3420
     cggcacgcaa tttacttcgc gccaattccg acaactgctc gccgcgttcg ggatcgaaca      3480
     ccgaaactcn ccggcatacg ccccccactg taacccggta gaacgggcga atcgcacgat      3540
     taagacgatg atcgcccagt atgtaaagga gcgtcaccgg gattgggacg agcacattga      3600
     cgccttacaa tttgcgctca ataccgcccg gcacgaagca accggatata ccccggcttt      3660
     cctgactcgc gggcgggagc tagccaggcc cagcccagag gatcgcggac tggtaaccca      3720
     ccaggggact ccggaagtca cccgccagcg gctggaggag gcgttcgaac tagcccgaat      3780
     acacctagcc cgtgccttcc aacgccagga acggcactac aatctgcggc gccgcgactg      3840
     gcgacctcaa atcggcgacc gggtgtggaa gcgggaccgt cccttgtcca accggggcga      3900
     ggcattcgcg gccaaactcg cgcccaaatt tatcggcccc ttaaccgttc ggaaaattgt      3960
     ttcgcccgtc atcgtcgact tacgcgacgc taggggaaag tggcaccgcc acgtgcatgt      4020
     ccaagattta aaacccgcgc ctaccgatac cgcggaacag gccggagaga gagagaaaga      4080
     ggagaaggac agaccgtaga gtaataaacc gagtcaccgc gctcaacgca gccccccccc      4140
     cccaccgccg gccgacgcgc atgtcgaacc gtccaggcac gcgcgtaaac aaacttcgcc      4200
     cctctctaac cgcattccac cggtgttttc cgataaacgc cgcagtccgc gacacgaccg      4260
     acccccacgg cctataaata ggagctcgcg acaagnttcc aaagtaatag tatcatggcc      4320
     aaccgacggc aagcggtgag aaatttgttc ggcgagatgt cctcggacag cgccgaggac      4380
     accgacccgc cgagacccac cgccgcacca ccgcccacgg acgacaaccc ccggccggcc      4440
     tgccgactgc cgcgacccgg gatctcggtg cagcgatccg accgggagaa ccgccggaag      4500
     gcgatcatga tcgcctcgcc accgccgccg cgacggccca gaagccgggc caccgtggcc      4560
     gccgccncgc tcagccgacc cccggcccga ctgccgaccg acgcgagcca ccggacccga      4620
     tcggcccccg ccagaagccg ggagccggaa ccatcggggc gagccgcgca caccgcagcc      4680
     ccggccgccg cccggtccag ccaggccccg acgtccgctc cggggtactt caccggcgcc      4740
     aggattgaga cccggcccaa tccggccatg acgccggtgc agctgggcga cggcaccacc      4800
     gtcgaggtcc cgctcatcgc cgccctcnta ggccggaaat accggttcac caccgcaacc      4860
     ggccggtgga tagtccggtt cgaccgccac ggccaacccc gggccgtccg tcagctgccc      4920
     aggtccgcga gcgggcacga ccccgagcgc taaagctcgt ttgtaaaata ggttaagaat      4980
     aaatanaatt agaatagaaa ccagagtttt tccttcctag aattaagacc cgtagaccta      5040
     agcgagggga ttccgctatt cccgccgacg aagagagaga tccggctggt aatctttttc      5100
     taagttagta accgtagcgc ttaattcgta gatgttagta acgtcttcga gcgaaacgta      5160
     taaccgaaag gtagggacca tatttaagag agggggtgat gtgacgatgc gtttcacaca      5220
     ccgtccctaa agcacccgac cgcccgaaaa taggcccgac gcctatgacg cccacgagcg      5280
     ctcgcgccca tgcgacgccc cagcgtgggg accgctccca ccgcgcgacc gatactcgcg      5340
     agtgggaggc ccgagccggg tatataagcc ggctcggcca gcataacgac acctgtcccg      5400
     atccgaaatc ctgcctaagc actgcctcag ggagctcccg aggcagtcaa ccgcatctcc      5460
     gctcccgccg acgaagagag gt                                               5482
//
ID   Gypsy-26_LH-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_LH_;
KW   Gypsy-26_LH-I; Gypsy-26_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-400
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 459-459 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 400 BP; 82 A; 133 C; 101 G; 83 T; 1 other;
     tgctccctct ccgaagccag ggtgctcccg gcgttcggcc ttccgctact cccgccgacg        60
     aagagaggtt gctccctctt cgaagccagg gtgctcccgg cgttcgactc tcgccgcttc       120
     cgccgacgaa gagcggttgc tccctctccg cgaccggagt attgccggta ttcagacgcg       180
     taagaactag taccccccgc acgcgaattg taaaggcttc cgcctatcct ctcgcgacgc       240
     gattcgcgca gccgcgcaac cattgtanat agtaaataag atgaaataat aaagactctg       300
     agttagatca aatcgagtta cgtcagtctg gacttcccct tctctcgaac cctgactccg       360
     gcgagccgat ccgcggcgtc gagaaaggag ccccgttaca                             400
//
ID   Gypsy-26_LMi-I repbase;    DNA;    INV; 6120 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6120
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(119..1639,1606..2670,2580..5753)
FT                 /product="Gypsy-26_LMi-I_1p"
FT                 /translation="MDPCYLLPLAVSSLQPPPGVPAMDQHNFTSAENRQMY
FT                 SIQPQFGSASALPPQHGLHTDSGFASPDLSKSSNSVPARSASTPALHSVNQ
FT                 EHVNINLHNQFSRAPVGGLISNTPRMYPSAPSDGYAHGLYVSSSAPSHNAF
FT                 NNSTNYAHRQYSAPQDSVVLDISYGSPRPVADTPGVQHVLPPQQQVPRPVM
FT                 PCTSHTLAMPQPVAPSAYSSLPACRVDFQLHPQDINPVDAASNLRTLAHLP
FT                 KLPPFKPQRAVMWFKVAEDIFEHCGFDDATKFLCVMSHLFEFDDLICDLVG
FT                 QPSRPHRYDHAKATILHCLGRTNADAVRKILHGELMGKKTPSQLWRHLRSI
FT                 APPSLFPDDALLTIWMDKLPSHVGLTLSQAPSAPLDQTLESADKVYAAYQS
FT                 YGGIRGLLTFDPGSFKKETPAGRGRGRGRKQDTTTSAPGKKNNVSFAALPA
FT                 PRPPPSPTGSFASPSSSDPPPLSKETTTGLPLCHRWCYFHYRFGAEARRCR
FT                 SPCQHPNASRRISLPAPKRISQVGSSAAPCDKNRRQDIVTLHSVSSGSEHS
FT                 GRIYLQDLASRTRFLVDTGADVSLLPPSLVFGKIHQRETIVQAVNSMDLKC
FT                 SGYYKHTLQLSSDCALKWTFLVAPVDEPILGIDFIRHFQLSIDIVRNAVYY
FT                 PKKQLYISCVTAGVAQDTTRAHLVTKQSELSAECDKWKSALLAQRLELSLQ
FT                 RIERLENLLNIKKVYAEFAEAHQCLPAVRDGLPAHTHKVSKCVSSEPAPAP
FT                 DITHVLNCASCSRTPLNSDCKHPSAHISCSPSELLPKPVGVFDISTSAVIS
FT                 RQPLPSAAPVVMPSTKCKRTNLTLPRPHVDTSAAVGTPVPARPKRLCFARR
FT                 PPPATRHRHHFGGSWHACTRATEAPMFCSAATACDTSQTLDCCTPRRVAIV
FT                 TDGTQHKLRLMDGPPISLRPRRLKPEFMQIAKEQLADLQNKGIIEPSSSCW
FT                 ASPIHFVLKKDGTYRMVGDYTKLNARTIIDKYPVPHIADFNHALAGAKYFS
FT                 VLDCKQAFHQIPMAPEDIEKTAITTPFGLFHYKFMPFGLKNAPQTWQRWIN
FT                 KTLSKFDFCFVYMDDILVFAPTKESSVERVRLVTDTLQSAGIELNNKKTQL
FT                 RQPSVVFLSYVVSADGLTPPTDKIKPVLDMPRPQTFKELRRFLGTINYYRK
FT                 HLPSASDVQAPLTDALAGPNTSGNRAIPWTPIMEKAFNELKQLLASAVTIA
FT                 HPRSDATLFITTDASDNAVGGVLSQTYNDVTTPLQFFSKKLNSAQKKYSAF
FT                 DRELLAVYEAIKHFRTDLEGRDFYVLTDHKPLVSAIKNPPSDPPPRRFRHI
FT                 DYILQFTNDIRYIKGADNVVADFLSRVGAVSSLIDLSDLARLQSADPDTLQ
FT                 LLSDQSSSLRPVKTTFPGVSGEVWCDSSTGTLRPFIPKGLQRLVFEKLHGL
FT                 AHPGVKASTRLVSERFVWRDMRRDCQSWARACVPCQQNKVSRHTSPPLGKF
FT                 SQPSGRFQHIHVDLVGPLPQSEGFRYLLTAIDRTTRWAEAFPIPNITSDTV
FT                 SRAFMDAWVSRFGSPVFLTTDQGRQFESATFSELCTLCGITKIHTTAYHPQ
FT                 SNGLVERWHRTLKTALRCHGPLWTEALPWVLLGLRSAYKEDLKGSVAEFVY
FT                 GQPLVLPGELVSPSPPTTPSELPSLVDRVRTHCKNIRPPPPAAHTHPRVYV
FT                 PRELDKCEHVFLRDDTIKAPLMPPYTGPYVVVSRSKNTMDIRVNDSVITVS
FT                 LNRVKPAFIEPSETSSDTVSSHASPPSSGQSPYRATQSGTDCSQRTHHSST
FT                 ASPATPASSSQSPPHATYSGTESFRRAQPSSTASSPLSSNSSGQSFRGFSP
FT                 CSPQSRADHSLGSTVGIPSSCDSNPSHASSPRGSTQHQLIAQGRRPHHPLR
FT                 RPPPPRLALSPVMGFLPPLANTHIHPQCPPSSYILLSTLTTSISSRC"
XX
SQ   Sequence 6120 BP; 1289 A; 1851 C; 1398 G; 1582 T; 0 other;
     ttggtgaccc cgatttcatt tcaatttcgt cgtgaacaag ttcgtttcga aagtttagtg        60
     ccttccgcgt cggtatttcg cgattcgtcc gcgccgcgag gccggctaca ccacagccat       120
     ggatccatgc tatctgctgc cattggctgt ttcatcactc caaccgccgc ccggagtccc       180
     cgcaatggac cagcacaact ttacctcggc tgagaatcgt cagatgtact cgattcagcc       240
     tcaattcggc tctgcatcag ccctaccgcc acagcacggc ctgcacactg attctggatt       300
     cgcgagcccc gacttgtcca aatcgtcaaa ttcggtgcct gccagaagtg catcgactcc       360
     agccctgcat tccgttaatc aggagcatgt gaacattaac cttcataatc agttttcacg       420
     tgccccagtc ggcggtttaa tttcaaatac gccgcggatg tatccctccg cgcccagtga       480
     tggctatgcg catggcttat acgtttcgtc gagtgctcct tcgcataatg ccttcaataa       540
     ttccacgaac tatgctcacc gccaatattc ggcgcctcag gacagtgttg ttttggacat       600
     ttcctacggc tcacctcggc ctgttgccga cacaccgggt gttcaacatg tgctcccgcc       660
     gcaacaacag gtcccacgcc ccgtgatgcc atgcacttca catactctcg ctatgccaca       720
     gcctgttgct ccgtcagcgt actcctctct tcctgcttgc cgagtggatt ttcagctgca       780
     tccgcaagat atcaacccgg tcgatgcagc aagtaactta cgcacgcttg cccacctgcc       840
     caagctgcca ccattcaaac cccaacgagc tgttatgtgg tttaaagtgg ctgaagacat       900
     ttttgagcat tgtgggttcg atgatgcgac caagttccta tgcgttatgt cacatctgtt       960
     cgaattcgat gatttgatct gtgaccttgt cggccagcct tctcgcccac accggtatga      1020
     ccacgctaag gctactattc tacactgctt gggtcgcaca aacgccgacg ctgtcaggaa      1080
     gatcctacat ggagaattga tgggcaagaa gacgccttcg cagctgtgga gacatttacg      1140
     atcaatcgct cctccatcct tgttccccga tgatgcactg ctgaccatct ggatggacaa      1200
     attaccgagc cacgtcggtt tgaccttgtc gcaggcccct tctgcaccgc tcgaccaaac      1260
     actggaatct gcagacaaag tttacgcagc ttaccagtcg tatggtggca tcagaggtct      1320
     cctaacgttc gacccgggct ccttcaagaa ggaaacacct gctgggcgtg gccgcggccg      1380
     tggccgcaag caagatacta ccacatctgc tccgggtaag aagaataacg tcagctttgc      1440
     tgccttgcct gctcctcgcc caccgccttc gccaacgggc tccttcgcta gtccgtcgag      1500
     cagcgatcca ccacctctct ccaaggaaac tactactggt ttacccttgt gtcatcggtg      1560
     gtgctacttt cactatcgtt tcggggctga agcaagacgc tgtagatctc cttgccagca      1620
     cccaaacgca tctcgcaggt aggctccagt gccgccccct gcgataaaaa taggcgccag      1680
     gacattgtga ctttacattc tgtgtcatcg ggcagtgaac attcaggccg tatttaccta      1740
     caggaccttg cttcgcgcac tcgttttcta gttgacactg gtgccgatgt atctttgttg      1800
     ccgccttcgc ttgtctttgg gaagattcat caacgtgaaa caattgtgca agccgttaat      1860
     tcgatggacc tgaagtgttc gggctattat aaacatacct tgcagttatc ctccgactgt      1920
     gccttaaagt ggacatttct cgttgcacca gtcgacgaac ctatacttgg cattgacttc      1980
     atcaggcatt ttcaattatc tattgacatt gtgcgcaacg ccgtgtacta ccctaagaaa      2040
     caattgtaca tttcgtgtgt tacggccggt gttgctcagg atactactcg cgctcattta      2100
     gtgaccaaac aatcggagct ttctgcagag tgtgacaagt ggaaaagtgc tcttctcgcc      2160
     cagcgcctcg agctctcgct tcaacgtatt gaacgtttgg agaatctgct caacataaag      2220
     aaggtatatg ccgagttcgc tgaagctcat caatgccttc ctgctgttcg agatggcctc      2280
     cccgcccaca ctcacaaggt tagtaagtgt gtttccagtg aaccggcccc ggcgccagac      2340
     attactcatg ttttgaactg tgcttcttgc tctcgcactc ctctgaacag tgactgtaaa      2400
     catccgagtg ctcatatttc gtgttcgcct tcggaacttt tgcctaagcc cgttggtgtt      2460
     tttgacattt ccacatcagc tgttatttct cgccagccat tgccttcagc ggcacctgtg      2520
     gttatgccta gtactaaatg caagcgtacc aacctgactc tgccccgccc gcatgttgac      2580
     acttcggcgg cagttggcac gcctgtaccc gcgcgaccga agcgcctatg ttttgctcgg      2640
     cggccaccgc ctgcgacacg tcacagacat tagactgctg tactccgcgt cgcgttgcca      2700
     tagttacaga cggaacacaa cacaaactcc gcttaatgga tggcccgccg atttcgctcc      2760
     gccctcgtag gttgaaacca gagtttatgc agatcgcgaa agaacaatta gccgatctcc      2820
     aaaataaggg aattatcgag ccttcttcca gctgttgggc gagccctatt catttcgttc      2880
     ttaagaaaga tggtacttac cgtatggttg gggactatac gaaacttaat gctcgtacca      2940
     tcattgacaa ataccctgta ccgcacattg ctgatttcaa tcacgcgtta gcaggtgcaa      3000
     aatatttttc ggtgttagac tgcaaacagg catttcacca gatcccgatg gcccctgaag      3060
     acatagagaa aaccgccatc actacgcctt tcgggctctt tcattataag tttatgcctt      3120
     tcgggttgaa aaatgcaccc cagacgtggc aaagatggat aaataagact ctgtcgaagt      3180
     tcgatttttg cttcgtctac atggacgaca tccttgtgtt tgctcccact aaagaatcga      3240
     gtgtagagcg tgttagattg gtgactgaca ccttacagtc tgccggcatc gaacttaata      3300
     acaaaaagac tcaacttcgt cagccgtcgg ttgtgttcct cagttatgtg gtgtcagcag      3360
     atggcctcac tccacctaca gacaaaatta agccagtcct tgatatgcct aggcctcaga      3420
     catttaaaga gctacgtcgc tttttgggga ccattaatta ttaccgcaag catctgcctt      3480
     ctgcttcgga cgttcaggcc ccgctcactg acgctcttgc cggccctaat acatcaggta      3540
     atcgtgctat tccttggacg cctattatgg agaaggcctt caacgagttg aaacagctac      3600
     tcgcctcggc tgttaccatc gctcacccgc gttctgatgc cacactgttt attacgaccg      3660
     atgcaagtga caatgctgtc ggtggcgtgc tcagtcagac ctataatgac gtcaccactc      3720
     cgcttcagtt cttttctaag aaacttaact cggcccagaa aaaatactcg gccttcgata      3780
     gggagttgct tgccgtctac gaggccatca agcatttcag aactgatttg gagggtaggg      3840
     acttctacgt tctgacggac cataaaccct tggtgtcggc tattaaaaac cctccgtctg      3900
     accccccgcc tcgtcgtttt cgtcacattg attacatact gcagtttacg aacgacattc      3960
     ggtacataaa aggggcagat aatgttgtgg ccgatttcct atcccgcgtc ggcgcagtat      4020
     ctagcctgat agacttgtcg gacttagcca ggctacaatc ggccgaccca gacactttac      4080
     agctgttatc ggaccaatct tcttctcttc gacccgtgaa gacaaccttt ccgggagttt      4140
     ctggtgaagt ctggtgtgac agttctacag gcacacttcg ccccttcatc cctaaagggt      4200
     tacaacgtct tgtgtttgag aaacttcatg gtttggctca cccgggtgtt aaggcatcga      4260
     cacgccttgt gtctgaacgt tttgtgtgga gagacatgcg ccgtgattgc cagtcatggg      4320
     cccgcgcgtg tgttccttgc cagcaaaaca aagtctctcg ccatacttcc ccacctctgg      4380
     gtaaattttc gcaaccgtcg ggccgattcc aacatatcca tgtagatttg gttggtcccc      4440
     tcccacagtc tgaagggttc cgctatctgc tcacagctat cgacaggact actcgctggg      4500
     cagaagcttt ccccataccg aacattactt cagacaccgt ttcacgcgcc tttatggacg      4560
     cttgggtctc ccgctttggc tcccctgtgt tcctcacaac cgaccagggt cggcaatttg      4620
     aatcggccac gttttctgaa ttatgcaccc tttgcggtat cacaaaaata cacactaccg      4680
     cttatcaccc ccaaagtaat gggctagtcg agcgctggca tcgcacctta aaaaccgctc      4740
     ttcgatgtca tggccccttg tggaccgagg cattaccttg ggtgcttctc ggcctacgct      4800
     cagcttataa agaagatctt aagggctcgg tggcggagtt tgtttatgga caacctcttg      4860
     tgctccctgg cgagctagtt tctccctccc caccgaccac gccctctgag ctcccttctc      4920
     tggtagatcg ggtacgcaca cattgcaaaa acattcggcc gccccctccg gcagcgcaca      4980
     ctcatccgcg cgtgtacgtg ccccgtgagc tagacaagtg tgagcatgtt tttctccgcg      5040
     acgacaccat taaggcccct ctcatgcctc cttataccgg cccttacgtc gtcgtcagcc      5100
     gctccaaaaa caccatggac attcgggtga atgactctgt cattaccgtt tctctcaacc      5160
     gtgtcaagcc agccttcatc gagccttcag agacttcctc tgacacggtt tcctctcatg      5220
     cctctcctcc gtcgagcggc cagtcccctt atcgtgccac acaatcgggc acagactgtt      5280
     ctcagcgtac tcaccattcg agtactgctt ctccggccac tccggcttcg agtagccagt      5340
     caccccctca tgccacatat tcgggcaccg agtcctttcg gcgtgctcaa ccctcgagca      5400
     ctgcttcttc gcccctcagc tccaattcga gcggtcaatc atttagaggt ttttcccctt      5460
     gcagccccca aagtcgagct gatcactctc tagggtctac tgtaggcatc ccttcgtcct      5520
     gcgacagtaa cccctcccac gcttcgagcc ctcgcggctc cacccagcac cagctgatcg      5580
     cccagggccg tcgcccgcac cacccgcttc gtcggccacc ccctcctcgc ctggctctca      5640
     gccctgttat gggtttccta ccccccctcg ccaacacgca cattcacccg cagtgcccac      5700
     catcgagcta tatacttttg tccaccctga cgacatccat aagctctcgg tgttagtcga      5760
     cggctcaact gctttcgtgt gcattgcgtg tgacgatgag cagggaggta gtgcttctcc      5820
     gcgtgtggtg cgaaggtttc gcctgtcaaa aagtgctgcg agtggtaacg ttcgtgcctt      5880
     tgtgcgtccg aatggcaaag tgttcctgca tgttcccgcc gacgtcggcc tgcagtctgc      5940
     caccggtcgg catcttcatc agccggcaca cctcgccgac ttcgtcgtcg acgtaccggg      6000
     gttcgccccc cggtcaccat cgtgtcggcc tgtgcctgac gccgccgaag aacttagtgt      6060
     ggtgtttttg ggaaattctc accccccgcc cccctcaggg gggggggggg gggggggcta      6120
//
ID   Gypsy-26_LMi-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-188
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 188 BP; 43 A; 41 C; 45 G; 59 T; 0 other;
     tgtggcgtcg atcccgtgat cgatagccgc gttatgttat ctttggtgga tgttctttgg        60
     gactgaccgg gacttccggc agtcggtctc ttgtatctga agtgttaaca tcatctgtac       120
     cgatatagag taataaatgt attaagagtg gataccgcat tcataactga actgcaccta       180
     tcccctca                                                                188
//
ID   Gypsy-26_MoPha-I repbase;    DNA;    INV; 4526 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4526
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1105-1105 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           291..4490
FT                 /product="Gypsy-26_MoPha-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAQQIPIAFNIDPFDPNEITWTQWLKRFKGALGIFEI
FT                 AENKKVPYLLHFVGTAAFKMLSNRLAPEDPYAKTFNDITKLLQEFYEPETL
FT                 EVAENFKLMQRKQQEGESVQDFLAALQRLSINCKMGDYTNTGIRNYFILGL
FT                 RNKRIQNRLLETKDLTLEKAIQTATAMELSEKGTKQCRGEEAIVKIGHSTK
FT                 KPVPRDKSKKPFYPSKNKDSKMHAKPNNSQNVVCYRCGKDHYANDCTMDRS
FT                 ITCSKCGKAGHIKKVCKSKSFATNSINTNSSNTAHSVLRVNEHTNYRDKIY
FT                 TTLNVNDKKVRFEIDSGAVVTLMSRNKARRLFANSTIYPTDINLVSYCKTQ
FT                 IDVIGYITVNVKSGKFLRKLNLYITKENRESLLGREWIRQLKEHSGIQKLL
FT                 GELQSIHTIKPSNNNTQLKFLLNEFKDLTDQSIAKISNIQARINLKKNITP
FT                 IFHKPRVVPFRLREKVEKTLDDLTQAGILQKIDYSDWATPIVPVLKKNGTV
FT                 RICGDYSVTINPNLKIDEHPLPTPDELLASMAGGTIFSKIDLLQAYLQLEV
FT                 RPEDRELLTLNTHKGLYRPTRLMYGVASAPAIWQRTIENILKDIPGVIVFL
FT                 DDIRVSGRNPEDHFNKLREVFLRLQKYNIRINVNKSQFFTDKIHYCGYIID
FT                 RNGVHKAPDKIEAINNMPSPTNLTELRSFLGMIHYYDRFIPNLSEILQPLN
FT                 KLLQKNTKFYWSIECKKAFESAKQAFISPKCLVHFDPKLPITLATDASPYG
FT                 VGAVLSHVYPDGTERAIQYASQTLTKVQQNYSQIDKEAYAIIFGIKKFYQY
FT                 LHGSKFTLITDHRPLTQIFSPTKGLPIFTASRMQHYAIFLQSFNFNIQYRQ
FT                 SEKHANADCLSRLPISSNNKNECDLVDEFYSSVFETLPVTAEQVAKATAKD
FT                 RELSKLLKSIKYGHNLYKNNKFYTIPIEEFTLSNNIIFRGSRVVIPYILRK
FT                 QILTELHSGHFGIVRMKHLAREHVWWNNIDKDIEYISKNCFNCNTYKNNPP
FT                 KVTNHIWEPTNTPFERVHADFAGPFLNHYFFILVDAHTKWPEIHVVKNITS
FT                 DITIKLCRQIFCTHGLPQYFVSDNAKTFTSKEFTQFLKNNGITQKLTAPYH
FT                 PATNGQAERYVQTLKNALKRMKATHANIEPALQNLLIQYRNTPHTKTGISP
FT                 AEALFSRKVRTRLDLLKPLVTTHTMQHEPPFDFKEGKRVSCRNYTGKAKWL
FT                 FGTIINRLGDLHYNIRLDDGRFWKRHVNQMRLIGENTPVRDEDYIQIECHT
FT                 PDNEIITPNTSIHTNTSVRNNVTNETTLTPSANTSPLIVNAPSDLNTNSSS
FT                 FSFAGNSNGNETPSTPSYSDLTPNSLYSTPTGSVIVTSTPKPFQEPVIEPT
FT                 IAAPTAETPTSAIVCTRSSRIPRLPKRFDDYVLPKKK"
XX
SQ   Sequence 4526 BP; 1633 A; 897 C; 759 G; 1237 T; 0 other;
     gtggcgacga ggatcgagaa tagcaaaagc agaacttaca tgcaagggga attctttatg        60
     cgtgggaaag gcgcgagaac attctgcagt gcgtgcgggg tccaggcaag cacgtgccgg       120
     gtgccagttg caagtgccgt tgagaacatt cgattgcatc atccttgcat tattgacacc       180
     gactgtacat gcatatacat gtgctaaacg ggaacattca aattcttttt acatatacgt       240
     gaagaaaatc aagataaagt ttcacgttcg tgaaataaat taaatttaca atggcacagc       300
     aaataccaat tgcatttaat attgatcctt tcgatccaaa cgaaatcacg tggacacaat       360
     ggctgaaacg gttcaaaggt gcacttggaa tcttcgagat agcagaaaat aaaaaagtcc       420
     cgtacctgtt gcattttgtt ggtacagcag cattcaaaat gctatctaac cgtcttgcac       480
     cggaagatcc atatgcaaaa acgttcaatg acatcacaaa actgctacaa gaattttatg       540
     aaccggaaac gttagaagta gctgaaaact ttaaattgat gcagcgcaaa caacaagaag       600
     gagaatcagt acaagacttt ttggcggcgt tgcaaaggct ttccattaat tgcaagatgg       660
     gagactacac taacacagga atacgcaact attttattct tggattaagg aataaacgca       720
     tccaaaatcg actgctggaa acaaaggacc tcaccctgga aaaagcaata caaacagcga       780
     cagcaatgga actctcagag aaaggaacca agcaatgtcg aggggaggaa gccatcgtca       840
     aaataggaca ttctacgaag aagccagtac ctagagataa gtctaagaaa cctttttatc       900
     caagcaaaaa taaagacagt aaaatgcatg cgaaaccaaa taattcacaa aatgtcgttt       960
     gttaccgttg tggcaaggac cattatgcaa atgattgtac aatggatcgt tcgattacgt      1020
     gttctaagtg cgggaaagca ggacacatta aaaaagtatg taaatcaaaa tcattcgcga      1080
     caaattcaat taataccaat tcgtcaaata ccgcacacag tgtattacgc gtgaatgaac      1140
     atacaaatta cagagataaa atctacacaa cgttaaatgt aaacgataag aaagtccgtt      1200
     tcgaaatcga tagcggcgca gtggttacgt taatgtctag aaataaagca cgaagattgt      1260
     tcgcgaattc aacaatttat cctactgaca taaatttagt atcatattgc aaaactcaaa      1320
     tagacgttat tggttacatt actgtaaatg ttaagagcgg taagtttctg cgtaaattaa      1380
     atttatacat tacaaaagaa aatcgggaat cgcttctcgg tcgagaatgg atacgacaat      1440
     taaaagaaca ctcaggcata cagaaattac ttggcgaatt acaatccata catacgatta      1500
     aaccttcgaa caataacaca caattaaaat ttttacttaa tgagttcaaa gatctaacag      1560
     atcaatcaat tgctaaaatt tctaatattc aagctcgtat taatttaaag aagaatatta      1620
     caccaatttt tcataaacca agagtggttc catttcgttt acgtgaaaaa gttgagaaaa      1680
     ctcttgacga tcttactcaa gcaggaatcc ttcaaaaaat cgattattcg gactgggcta      1740
     cgcccattgt ccccgtttta aaaaaaaacg gtacggtacg aatttgcggt gattatagtg      1800
     ttaccatcaa cccaaattta aagatagacg agcatccctt gccgacgcct gatgaattat      1860
     tagcatcaat ggcaggtggc acaatatttt ctaaaattga cttattgcaa gcctatttac      1920
     aattagaagt acggccggag gaccgtgaat tacttacact caatacacat aaaggacttt      1980
     ataggcctac acgcctaatg tatggcgttg catccgcccc cgcgatttgg caacgtacga      2040
     tagagaatat tttaaaagac attccgggcg taatagtttt tctagatgat atacgcgtat      2100
     cgggaagaaa tcctgaagat catttcaata aattacgaga agtttttcta cgtttgcaaa      2160
     aatataatat acggataaat gtcaataaaa gtcaattctt tacggataaa attcattact      2220
     gcggatacat aatagataga aatggtgtac ataaagcacc agataaaata gaagcaatca      2280
     ataatatgcc tagccctact aatttaaccg aattacgtag ctttctcggc atgatccatt      2340
     actacgatag gtttatacca aatcttagcg aaattttaca accattaaat aaacttttac      2400
     aaaaaaatac taagttttat tggtctatcg aatgcaaaaa agcttttgaa tcagcaaaac      2460
     aagcttttat tagtcctaaa tgccttgttc atttcgatcc gaaattaccc attactcttg      2520
     ctacagatgc aagtccttac ggtgtcggtg ccgtattatc gcacgtgtat cccgacggta      2580
     cggaacgggc aattcaatac gcatctcaaa cacttacgaa agtacaacaa aattattcac      2640
     aaatagacaa agaagcatac gctattattt ttggtataaa aaaattttac caatacttgc      2700
     acggctctaa attcacactt attacggatc atcgtccatt aacgcaaatt ttctcaccta      2760
     caaaaggctt accaattttc acagcatcaa gaatgcaaca ttatgctatc tttttgcaaa      2820
     gtttcaattt caatatacag tacagacaat cagaaaagca tgctaatgct gattgtttat      2880
     ctagattgcc aatttcttca aataataaaa atgaatgtga cttagtcgac gagttttata      2940
     gctctgtttt tgaaacttta cctgttaccg ctgaacaagt cgcaaaagct acagctaaag      3000
     atagggagct atctaaacta cttaaatcta ttaaatacgg acacaattta tacaaaaata      3060
     ataaattcta tacaattccc attgaagaat ttactttatc taataatatt atttttagag      3120
     gatcaagagt agttatccca tacattctac gaaaacaaat actaactgaa ttacattcag      3180
     gacactttgg cattgtacgt atgaaacact tagccagaga acacgtctgg tggaacaata      3240
     tcgataaaga tatcgagtac atttcaaaaa attgctttaa ttgtaatact tacaaaaata      3300
     accctcctaa agttactaac catatttggg aacctacaaa tacgcccttc gaaagagttc      3360
     acgcagactt tgcagggcca tttttaaatc attacttttt catacttgtg gacgcccaca      3420
     ccaaatggcc ggaaatccat gtagtgaaaa atattacttc agacatcact attaaattat      3480
     gcagacaaat tttctgtacc catggtttac ctcaatattt cgtatccgat aacgcgaaaa      3540
     cttttacttc taaagaattt acgcaatttt taaaaaataa tggaattaca cagaaactta      3600
     cagctccgta ccaccctgca actaacggtc aggcggaaag atatgttcaa actctaaaaa      3660
     atgcactcaa acgaatgaaa gctacacatg cgaatatcga accagcatta caaaatttac      3720
     ttattcaata ccgaaataca ccacacacga aaacaggaat ctctccagct gaagcgttat      3780
     tttcacgaaa agtcagaaca cgcctcgatt tacttaaacc acttgttact acacatacaa      3840
     tgcaacatga acctccattt gatttcaagg aggggaagag agttagttgc cgaaactaca      3900
     caggcaaagc taaatggctt tttggtacaa ttataaatcg attaggcgat ttacattaca      3960
     atatccgtct tgacgacggc cgtttttgga aaagacatgt aaatcagatg cgactgatag      4020
     gcgaaaacac accagtgcgc gatgaagatt atattcaaat tgaatgtcac actccggaca      4080
     atgaaataat tacaccaaat actagtattc acacaaatac aagtgtgcga aacaatgtta      4140
     caaatgaaac tacacttaca ccaagcgcta acacaagtcc attaattgta aatgcgccga      4200
     gcgatttaaa cacaaattca agttctttca gttttgctgg aaattcaaac ggaaatgaaa      4260
     caccatccac tccatcatat tccgatctta ctcctaactc tttgtactca actcctactg      4320
     gttccgttat agttacctct acacctaaac ctttccaaga accagtgatt gaacctacaa      4380
     tagcagcacc tacagctgaa acccctacat ctgctatagt gtgtacgcgc tcctcacgaa      4440
     ttcctagatt acctaagcga ttcgatgatt atgttcttcc aaaaaagaaa taagttactt      4500
     ttgtattttt cttttagtga ggggag                                           4526
//
ID   Gypsy-26_MoPha-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-303
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1190-1190 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 303 BP; 81 A; 80 C; 53 G; 89 T; 0 other;
     tgttatatat gttcctatta atattaagag tatacgcgca tgacccgttc tcatgcgcga        60
     tcgaagccga ttggtggctc atgcgaacct gccttgcgta tctagccatg tgactcaatc       120
     ctactgcaag gtttcttctc aagactctct cctcgtatga ccagcgtctc gtgcacacgt       180
     tatagtaata taagtttata cgacgcaata aactgtgttc accaattatc taaccttgtt       240
     ccactctgct aatgctgtaa acccactacc taccagtacg gcagcgatca agcatacaca       300
     ata                                                                     303
//
ID   Gypsy-26_MSe-I repbase;    DNA;    INV; 4314 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4314
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 903-903 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..3608
FT                 /product="Gypsy-26_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSNYIGNLSVFDHKIHDWDVFKGQLTHFIVLNNIPDG
FT                 HKSAVLLTNLSEESYRLIRNLVYPKKLEESTYNELVKLLDGHFTPKKSTFV
FT                 DRAKFYEAIKSDGESIEEWAARLRGLAVYCEFGTELDTLLRDRFVLGFGLG
FT                 PERDRLFECDSGKLTFGEALQVAQKASAARAARSTGIATGITTIKDEPVFH
FT                 AGRTTRAGDACAGDGRAGGSAIQRGHGAGDVAFRCTVCGLKNHNARNCRFK
FT                 NYKCLKCGQKGHLKKLCDVSKCNLNNFVTENVQPTQENDCKECELFSIRYV
FT                 NYSPVKICVQVNNIELCMELDTGSGTTVISDKLYSSYFSQSRLLKSDIKMC
FT                 LYNGHSITPLGYFVAKIKYSTLCKDIKIYVIQNGGPPLLGRDFMAKFKVYF
FT                 ATSNNNINPCLNNKYIEVVQRLLDQYPDVWKDELGCFSKFEVELQLKDKVT
FT                 PKFFKPRPVPFALKDRVSAELDRLVSLGILVPVNHSDYATPIVPVLKENGK
FT                 LKIAGDFSCTLNKDLKVDRYPLPRIEEVFSKLGGGERYTKIDLSNAYNQFK
FT                 LSKASQKLTTINTHKGLFSYSRLVYGLANAPAIFQKAMETLLSGLEGVSVW
FT                 LDDICITGPTTEIHLSRLREVLRRLQDAGLRLQKDKCVFFESSVTYLGYVI
FT                 DRNGLRTSPSKVEAILKAPAPINVLGVKRFLGIVNYYRNFIPLASAILHPL
FT                 HELLREGAAWQWGTSQQEAFECVKRELASERVLAHFQPDAPLLLTVDAGPS
FT                 GLGAVLAHPDTEGRERPIAFASRSLSVSEKNYSQIQKEATAIIYGVKHFHQ
FT                 YLYGRQEPFILKTDHRPLLSIFGKGKGISVTAALRLQRYAIILSAYNYKVQ
FT                 FVDGKNNQIADYFSRSPISEPVMDEREDESSRHFLFLETSVEPVLFENIKQ
FT                 ATARDNTLKMVIKYMNNGWPRKITCKSMLPFFQCKTDLEVIDGCLFRGHRI
FT                 VIPTVFKEKMLKELHSSHFGIIKTKSAARGRMWWPGIDADIERWVGACTAC
FT                 SAVRAAPPRAPPASWPRPLGPWQRIHIDYMSIGQTVYLIVVDAFSKWLECV
FT                 LMDRGTTTNVLIQKLSEMFSRYGVPHVIVSDNDVKISSAEFYNFCKINGIE
FT                 HITSPIYHPSSNGQAENSVRTCKKMIKCALLESKCQKDMYKKLQNFLFNFR
FT                 NTVHCTTGVTPAKLMMGRDLRCRLDVNSTAK"
FT   CDS           3577..4239
FT                 /product="Gypsy-26_MSe-I_2p"
FT                 /translation="DVDWMLILPQNKNYNKSDQLILKRNRCFQVGDRVWSR
FT                 WFIGRKSVWREGTVRKIVGNRLFEIYFKDYNISCIRHLDQIRKFISAVTNS
FT                 NSVNQSGNGEVLNPLPTSVASPSPPQSPLSDPLHNSTSPGQWPSAFVPSSA
FT                 SVSESGAEEGRDMMSYAPDENIVASRNNSELNKGDMDNGESSETGGTISEV
FT                 PQDDINPTHSGTTTLRRSKRPKNPVNYKPYL"
XX
SQ   Sequence 4314 BP; 1304 A; 818 C; 1009 G; 1183 T; 0 other;
     attggcgacg aggacgaact acccacgcat tttgcaaaat gtcgaattat atcgggaatt        60
     taagtgtttt cgatcataaa attcacgatt gggacgtttt caaaggacaa ttgacgcatt       120
     ttattgtgtt aaataatatc ccagacggcc acaaaagtgc agtgttgttg accaacttat       180
     cggaagaatc ttaccgtcta attagaaacc tcgtttatcc taagaagctt gaagaaagta       240
     catataatga gctagtgaaa ttactcgatg gacattttac gccgaaaaag tctacgttcg       300
     ttgatagggc aaaattctat gaggcgatta agtccgacgg tgaaagcatc gaagaatggg       360
     ctgcacggct gcgagggtta gccgtgtatt gcgaatttgg cactgaattg gacacgctcc       420
     tccgtgaccg gttcgtgcta ggcttcgggt taggcccaga acgtgataga ctttttgagt       480
     gtgactcggg gaagctgact ttcggagagg cgttacaagt cgcccaaaaa gcgtcggcag       540
     ctcgcgcggc gcgatctact ggcatcgcta ccggcattac aaccatcaag gacgagcccg       600
     tattccacgc gggtaggaca acgcgcgccg gcgacgcctg cgccggcgac ggccgcgccg       660
     gtgggagcgc gatccaacgc ggtcatggag ctggtgacgt cgcattccgt tgcacagtgt       720
     gcggcttaaa gaatcataat gcgcgaaatt gtagatttaa aaattataag tgtttaaaat       780
     gtgggcaaaa aggccattta aaaaagctat gtgatgtttc aaagtgtaac ttaaataact       840
     ttgttacgga aaatgttcag cctactcaag aaaatgactg taaggaatgt gaactcttta       900
     gtataaggta tgttaactat agtccggtta aaatttgcgt ccaagtaaat aatatagaac       960
     tgtgtatgga gttagatacg ggttcgggca caacagttat ttcagataag ttgtattcgt      1020
     cttatttttc acaatcaagg ttgcttaaaa gtgatatcaa aatgtgtcta tacaacggcc      1080
     atagtattac acccctagga tattttgtag caaaaataaa atattctaca ctgtgtaaag      1140
     acattaaaat ttatgttata caaaacggag gcccaccgtt attgggacgt gattttatgg      1200
     ctaaatttaa agtttacttt gcaacatcta ataacaatat taatccatgt ctgaataaca      1260
     agtacattga agtagtgcag cgactgttgg atcaatatcc ggacgtttgg aaagacgagt      1320
     taggctgctt tagcaagttt gaggtcgaat tgcaattgaa agataaggta accccaaaat      1380
     tttttaagcc aagaccagta ccttttgcct taaaagatag agttagtgcg gagcttgata      1440
     gacttgtctc cctaggaatt cttgtgcccg ttaaccattc cgattatgct acacctatag      1500
     taccagtttt aaaagaaaac ggtaaattaa aaatagcggg ggatttttcg tgtacgttaa      1560
     ataaggattt gaaggtagat agatatccgt tacctcgtat agaagaggta ttttccaagt      1620
     taggtggtgg tgaaagatat actaaaatag atttgagtaa tgcctacaat caatttaaat      1680
     tatcaaaagc atctcagaaa ctaaccacca tcaatacaca caaagggtta ttttcatata      1740
     gtcgtttagt ttatggtcta gcgaatgcac cggctatatt ccaaaaggca atggaaacac      1800
     tattgtcagg gttggagggt gtcagtgtat ggctcgatga catttgtatt acgggtccta      1860
     ctacagaaat acatttatca aggttgcggg aggtcttgcg tagattacag gacgcaggat      1920
     tacggctgca aaaagataaa tgtgtgtttt ttgaaagtag tgttacttat ttaggatacg      1980
     taatagatag aaacggattg agaacttctc catctaaggt tgaagcgata ttaaaagcac      2040
     ccgcccccat caatgtatta ggagtaaaac gattcctagg tatagtaaac tactatagga      2100
     attttattcc attagcttcg gcaatattgc acccattgca cgaactgttg cgcgaaggcg      2160
     cagcatggca gtggggcaca agccagcagg aggctttcga gtgcgttaaa cgcgagctgg      2220
     ccagcgagcg tgtgctggcc cattttcaac cagacgcacc gttgttactg acggtggacg      2280
     caggcccaag cgggctcggc gctgtgttag cacacccgga caccgagggc cgcgagcgac      2340
     cgatagcttt cgcatctcga tcgttatcgg taagtgaaaa aaactatagc caaattcaaa      2400
     aagaagcgac ggcaattatt tatggagtta aacattttca ccaatactta tatggtagac      2460
     aagaaccgtt catattgaaa accgatcaca ggcccttgct ttctattttt ggtaaaggta      2520
     agggcatttc tgtcacggct gccttacgct tacaaaggta cgcaattata ttatctgctt      2580
     acaactataa agtacaattc gtggacggta agaataatca aatcgcagac tatttctctc      2640
     gttcccccat atcagaaccc gtaatggatg agagggagga tgaaagttct aggcattttc      2700
     tcttcttaga gacaagcgtg gagccggttc tattcgaaaa cattaaacaa gctaccgcga      2760
     gggacaatac gttgaaaatg gtaatcaagt atatgaataa cggttggcca aggaaaatta      2820
     catgtaagtc gatgttgcca ttttttcagt gtaaaacaga tctagaggtt attgacggct      2880
     gtttgttccg cggccataga atagtgattc cgactgtgtt caaagaaaaa atgttaaaag      2940
     agttgcattc gtcacatttt gggataataa aaactaaaag cgctgcccgt ggtaggatgt      3000
     ggtggcccgg aatcgacgcc gatatcgagc gatgggtagg cgcgtgcact gcttgctccg      3060
     cagtgcgcgc tgcaccgccg cgcgcgccgc ccgcgtcctg gccacgcccg ctgggcccat      3120
     ggcagcgtat acacatcgat tatatgtcta taggacagac tgtttacttg attgtggtcg      3180
     acgcgttttc caaatggttg gagtgtgtgc taatggatcg aggcactact acaaatgtac      3240
     ttatccaaaa actttcagaa atgttttcta gatacggggt accccacgtc attgtctctg      3300
     ataacgatgt taaaattagt tccgccgaat tttataactt ttgcaaaatt aacggtatcg      3360
     aacacataac ttcacctata tatcacccgt ctagcaatgg ccaagcggag aactcggtca      3420
     gaacgtgtaa aaaaatgata aaatgtgcgt tattagaatc caagtgccag aaagatatgt      3480
     acaaaaaatt acaaaacttt ttatttaatt ttagaaacac agttcattgt actacaggtg      3540
     tcaccccagc taagttgatg atggggcgtg atttaagatg tagattggat gttaattcta      3600
     ccgcaaaata aaaactataa caaaagtgat caattgatat taaaacgtaa tagatgtttc      3660
     caagtgggtg accgggtgtg gtctaggtgg tttattggga ggaagagtgt ttggcgcgaa      3720
     ggcactgtaa gaaaaattgt aggtaatcga ttgtttgaaa tttattttaa agattataat      3780
     atcagctgca ttagacattt agatcagata agaaaattta ttagtgcagt tactaatagt      3840
     aactctgtga atcaaagcgg taacggggaa gtgttaaacc cactgccgac gtcagtagca      3900
     tctccatctc caccgcagtc gccattgtcc gatccgctcc acaatagtac ttcccccggg      3960
     caatggccgt cggcgtttgt gccgtcctcg gcatctgttt cagagtcagg tgccgaggag      4020
     ggaagggaca tgatgtccta cgcgccagat gaaaatattg tggcgagtag aaataatagt      4080
     gaattgaata aaggggatat ggacaatggt gaaagttcgg agactggtgg tactatttcg      4140
     gaagtaccac aggatgatat taatccaact cactccggta caactaccct caggcgctct      4200
     aagaggccta agaaccctgt gaattacaag ccatatttat aagttttatt gtattatatt      4260
     gtttaagtat gtctgactgt tctgttgcag atttccaaat taatgttgga ggaa            4314
//
ID   Gypsy-26_MSe-LTR repbase;    DNA;    INV; 88 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-88
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 952-952 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 88 BP; 24 A; 13 C; 20 G; 31 T; 0 other;
     tggaatgtat gtctaatgtc actgtcattg acttagtaat aaactagcta cggaacagta        60
     cggttgtttt attgcgtgtg acgtatca                                           88
//
ID   Gypsy-26_OrIn-I repbase;    DNA;    INV; 4172 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1567-1567 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..1141
FT                 /product="Gypsy-26_OrIn-I_1p"
FT                 /translation="MVTSVKVIVHIENSEGDLIITKISRVGSGNFVFPAEF
FT                 QSLAECHSELLTIKAVQNALRSMVRSGQYRNLALTLKNEIIPVYLDDDLNF
FT                 VFKEFYLEEEQLSDIDVKTEDPNGKLFEQFSKFLKIQEDADISKVQNSFVL
FT                 EKFDGKKKAREWLIFFEKECSRHNIKSDAKKIQCMRLFLSDNALEWYHATL
FT                 YKLTAFGSWDDWSSSFLMTYADKSWRSIAFVYNFRYLNGSFLDYALKKERL
FT                 LLETEPEMTEQSRINHIVIGLPIYIQDRLDKEEIKFVEHLFNQLRRYEPRR
FT                 ENQYATKDEPRMNRMTEKKEEQGKQNKNFERKPCSICEGLGHRRFHSENVC
FT                 WHNKSVKKCNLASTHESEKENDSKNA"
FT   CDS           1129..4170
FT                 /product="Gypsy-26_OrIn-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="FKKRVSPPLIRLNVKINDKDFNGIYDSGSNVTLINSK
FT                 IIEDIKDKIYSDRTLLKTISGVEKCSGKIKIKLKINKIEKEIEAYVVKKDK
FT                 FFYDVLIGLDVIREFKLIQDEKLNVLQRISEDVVENVSKEVEKNESIKSIN
FT                 FNTNESEFLEAGLKELKLEHLSETNQKEIKSLIKSNLVAFAKEKFDIGVVK
FT                 NYEAHIKLLENKFVAKKPYRCSPSDQREIEEQVGQLLKHDLIEESSSPFAA
FT                 PVTLAYKKEDGRRSRFCIDFRALNGLLVPESQPFPRIEDILVYARNCKWFS
FT                 VVDISSAFWTIPIREKDRHKTAFVTQKGHYQWKRLPFGLKISPAVFQRVLS
FT                 STIRRHGCSEFCANYIDDILIFSKTFEEHIEHLQKLLVAIESEGFKLKLSK
FT                 CNFAHSSVKYLGHILGYNSVRPHHDNLKAIRDFPRPENKKCVRQFLGKLNF
FT                 YHKYIPDYTRLLEPLHNLLRDKTEFQWTQDCEKTFEEIKNYLCTSPILAIF
FT                 DPVRPTYLFTDASKLGVGAVLKQIQDSGELHPVAYFSKKFSPAQSKKKAIY
FT                 LECLAIKEAIQYWQHWLIGITFEVVSDHKPLENLKLKARTDEELGDLVYYL
FT                 TQYNFRVRYSPGSTNQEADALSRNPVLEYFDASDEVLRVVNLVSLEEIRSD
FT                 QRNNSISDQSIFWKDGLMFKKLRNRERICVSEEFGKGLIKKVHNHYGHIGV
FT                 GHLANKLRPFYYFRNMDLHIQDFCARCEICRKHKTRRSREFGLLSQLGPAK
FT                 EPFEIMSLDTIGGFAGYGTSKRYLHLLVDHFSRFAYTFSSCGQRATDLITF
FT                 LRPILLANKVKILLADQYAGINSSMFRNFLRRHGVTIIFTSVDCPFSNGLN
FT                 ERLNQTLVNRIRCKLSEQPQRPWSTVATECTEEYNRTTHSVTKFAPCYLMF
FT                 GKISSIVPEPLMIPSNYQEDRIQAFENSQRYHDANKRRFDRLKRHVEFRPG
FT                 DMVYVDVGNKLNRKKLDPIRSGPYRVKRKISNVIYEIDFENRRLNYVHISK
FT                 LSSFVGGG"
XX
SQ   Sequence 4172 BP; 1384 A; 580 C; 895 G; 1313 T; 0 other;
     aatcgaaatt ttctgcttcg acattggaat caagatggtg acatcagtaa aggtgatcgt        60
     tcatattgaa aattcagagg gagatctaat aattacgaag ataagtaggg ttgggtccgg       120
     aaattttgta tttccggctg aatttcagtc gttggctgaa tgccattcgg agttgctgac       180
     tattaaggcg gtgcagaatg cgctgagatc aatggtcagg agtggtcagt ataggaattt       240
     ggccttgacc ctaaaaaacg aaattattcc ggtttactta gatgatgact taaattttgt       300
     ttttaaagaa ttttatttgg aagaggaaca gctgtcggat atagatgtaa aaacagaaga       360
     tccaaatgga aaattatttg aacagttttc aaaatttttg aagattcaag aagatgctga       420
     tatttcgaaa gttcaaaatt cgtttgtttt ggagaagttt gatggaaaaa aaaaggcgcg       480
     agaatggctg attttttttg aaaaagaatg tagtcgacat aatattaagt ctgatgctaa       540
     aaaaatccaa tgcatgagat tatttttatc ggataatgca ttagaatggt atcacgctac       600
     tttgtataaa ttaacggctt tcggatcttg ggatgattgg tccagtagtt ttctaatgac       660
     ttatgcggac aaaagttggc gatcgatagc atttgtttac aattttcggt atttaaacgg       720
     ttctttcctt gactatgctt tgaagaagga gagattgtta ctggaaacag aacctgagat       780
     gacggaacaa tcgcgtatta atcatatagt aatcggttta ccaatttata ttcaggatcg       840
     tttggataag gaagagatca agtttgttga gcatttgttc aatcagcttc gccgttatga       900
     acctcgtcgt gagaatcagt atgctacaaa ggatgaaccg aggatgaatc gaatgacgga       960
     aaagaaagaa gaacagggaa agcagaacaa aaattttgag agaaaaccgt gttctatttg      1020
     cgaaggtctt ggacatagac gatttcattc tgaaaatgta tgctggcata acaaaagtgt      1080
     aaagaagtgt aacttggctt caacacatga aagtgaaaag gaaaatgatt caaaaaacgc      1140
     gtaagtccgc cactaattcg tttaaatgta aaaataaatg ataaagattt taatggtatt      1200
     tatgacagtg ggtcaaatgt aacattaata aattccaaaa taatagaaga tatcaaagac      1260
     aaaatttatt cggataggac tttattaaaa acaattagtg gtgtggaaaa atgcagtggt      1320
     aaaataaaga ttaaattaaa aattaataag attgaaaaag aaattgaagc ttatgtggta      1380
     aagaaagata agtttttcta tgatgtacta ataggactgg atgtaataag agaattcaaa      1440
     ttaattcaag atgaaaaatt aaatgtatta cagaggatat cagaggatgt agtggaaaat      1500
     gtttctaagg aggttgaaaa gaatgaatcg ataaaatcaa taaattttaa tacgaatgaa      1560
     tcggaattcc ttgaggcggg tttgaaagaa ttgaaattgg agcatttaag tgaaacgaat      1620
     caaaaagaaa ttaaaagttt gataaaatca aatctggtag cttttgctaa agaaaaattt      1680
     gacattggtg tagttaaaaa ttatgaagct cacataaaac ttttggaaaa caaatttgtg      1740
     gctaaaaagc catatagatg ttccccttct gatcaaagag aaattgagga gcaagttggt      1800
     caattgttaa agcacgattt gatcgaagaa tcatcgtctc catttgcagc tccagtaact      1860
     ttggcttata aaaaggaaga cggacgtcgt tctcgcttct gtattgactt tagagcgctt      1920
     aatggattat tggttccgga atcacaacca tttccacgta ttgaagatat tttagtgtat      1980
     gctcgaaatt gtaagtggtt ttcggttgtg gacattagtt cggcgttttg gacgatacca      2040
     attcgggaaa aagatcgaca taagactgca tttgtcactc agaaaggtca ctatcaatgg      2100
     aaaaggttac cgtttggttt gaagatttca cctgcagttt ttcaaagagt tctttcgagt      2160
     acaattcgcc gtcatggctg ctcggaattt tgtgcaaatt atattgatga catattgatc      2220
     ttttcgaaaa cttttgaaga acatattgaa catttgcaga agttgctagt ggctattgag      2280
     tcggaaggtt ttaaattaaa attatcaaaa tgtaatttcg ctcattcttc ggtaaaatat      2340
     ttaggccata ttctagggta taactctgtt agacctcatc atgacaattt gaaagctatt      2400
     cgagattttc ctagaccaga aaacaagaag tgtgtccggc aattccttgg aaaactgaat      2460
     ttttatcata agtatatccc ggattatact cggcttctcg aacctctgca taatttgctt      2520
     cgagataaaa cggaatttca gtggacacag gattgtgaga aaacttttga agaaattaaa      2580
     aattatttat gtacaagtcc gattttggcg atttttgatc cagtgcgtcc aacgtatctg      2640
     tttacagatg cgagtaagtt aggagtcgga gctgttttaa agcagattca ggactcggga      2700
     gaattgcatc ctgtggctta tttttctaag aaattttcac ctgcccaatc aaagaagaaa      2760
     gcgatatatt tggaatgttt ggcaattaag gaagcgattc aatattggca acattggctt      2820
     attggtatta cgtttgaagt tgtttcggat cacaaacctt tggaaaattt aaaattgaaa      2880
     gctcggacag atgaagagtt gggagatttg gtctactatc ttacacaata caatttcaga      2940
     gttcgttatt ctcctggttc cactaaccaa gaagcggacg ctctttctcg aaatcctgtt      3000
     ttagagtact ttgatgcttc tgatgaagtt cttcgtgttg ttaacttagt gtcgcttgaa      3060
     gagattcggt ctgatcaacg aaataattcg atatctgatc aaagtatttt ttggaaagat      3120
     ggacttatgt ttaagaaatt gagaaacaga gaacgtatct gtgtatcgga agaatttgga      3180
     aaaggtctta ttaaaaaagt tcataatcac tatgggcata ttggtgttgg tcatcttgca      3240
     aataaattac gaccgtttta ttattttcga aacatggatt tacatattca ggatttttgc      3300
     gctcgatgtg agatttgcag aaagcacaaa actcggagaa gtcgtgaatt tggattgtta      3360
     tcccaattgg gtcctgctaa ggaaccgttc gagattatgt cattggatac gattggaggt      3420
     tttgctggtt acggaacttc gaaacgttat cttcatcttt tagtggatca tttttcgagg      3480
     tttgcttata ccttctcatc ttgtggacag agagctacag atcttataac gtttttacgt      3540
     ccgattttac tagcaaacaa ggtaaagatt ttactagcag atcaatacgc tggaataaat      3600
     tcgagtatgt ttcgaaattt tttgcgaagg catggtgtca ctataatttt tacatcggtt      3660
     gattgtcctt tttcgaacgg tttgaatgaa aggctaaatc aaactcttgt taatcgcata      3720
     cgttgtaaat tgagtgaaca acctcagaga ccttggtcaa cggttgcaac ggagtgcacg      3780
     gaagaatata atcggacaac tcatagtgtt acgaaatttg ctccatgtta tttaatgttc      3840
     ggaaaaatat catcgattgt gccagaacct ttaatgatcc cgtcaaatta tcaagaagat      3900
     agaattcaag cttttgaaaa ttctcagcgg tatcatgatg cgaataaacg tcggtttgat      3960
     cgtctaaagc gacatgttga atttcgacct ggagatatgg tgtatgtgga cgttgggaac      4020
     aaactcaaca gaaagaagtt agatcctatt cgttcaggtc cttatagagt gaaaaggaag      4080
     atatcaaatg tgatatacga aatagacttt gaaaatagac gtttgaatta tgtacatata      4140
     agtaaacttt cgtcttttgt ggggggggga ga                                    4172
//
ID   Gypsy-26_OrIn-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-203
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1533-1533 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 203 BP; 77 A; 20 C; 24 G; 82 T; 0 other;
     tgtaatttga aattaggttt ttggttcttt cggctaacat ctgttttaat tcaaaattca        60
     ttatagtaaa acataaagaa ctagaagtga ctataaattt cgattttact ttacaggtaa       120
     aattttataa aaatttatat gaaattaata aatactttac agtacaatcg ttttgtagtc       180
     atttgattga ctaacaaatt ata                                               203
//
ID   Gypsy-26_SI-I repbase;    DNA;    INV; 4358 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_SI_;
KW   Gypsy-26_SI-LTR; Gypsy-26_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4358
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 442-442 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3385-3843] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..4344
FT                 /product="Gypsy-26_SI-I_1p"
FT                 /translation="MDQYLSALTESQQKLAEGQQLFMQQMVESQKQMMSLL
FT                 TNKVQGNSASTSSQLGTDSNLSAPLAKSSQFSNLAERLGKFIHEPTKGKTF
FT                 TLWYERHESTFIDGARGLTEEDRKQLLLNALGDDEYQRLLSRLSPSKPHDL
FT                 SFADLVKHLKKQFHDNKSLFQRRFEALNYRATPSVAVIDILDRISIMGDAF
FT                 EINNFNIDQLKILLAALALSDHAYQTERTLLFKITAEKENCTFNDIKEICY
FT                 AHVERTADVRRVEDQHSPEINAVQKYSKSKPKEKEKESKRYIKPSTSKSSF
FT                 SQCRGCGLSTHKRDDCPFKNSDCRICKKTGHIAKVCWSKGKKKVESIHFKG
FT                 VSGTGQQHRKYVEILLNDKQTKMQLDTGADVTAIGSKIWTNIGCPPLQPYK
FT                 STCVNVSGHKLNTKGYFNATLSYKGKITKRPVIVLNRLNTALISAQVIDEL
FT                 KLVEYDQGVTGNQLAINTVKDTSLSNKFPELFSDEIGECTKAKVKLRLKKD
FT                 AYPIHAQRRPVPLALEEQLNAEIDRLISNEILTPTDTSEWAAPIVVAKKPN
FT                 GKLRICADYSTGLNEALESDDYPIPNIEDIMAKHRGNTRFTQLDLSDAYFQ
FT                 MKLDDESKPLTTINTHRGLFVFNRLVFGLKPAPAIFQRTLEQALADIPGVL
FT                 IYLDDILIGGRDRLEHDTRLNAVLNRLQDWGFRLSLGKCKFHTSSVKYLGF
FT                 IISSRGIEPDPARIQPIREMRVPNNSKEVRSFLGLVNYYGKFVPNLHRLKA
FT                 PLETLLKKDTPFRWTSACNQAFHKVKEVLLSPLLLAHYDPAQTLIVAADAS
FT                 PTGIGGVLLQRYPDGQVKAVFHMSKALTKTQQGYSQIEKEALALVTAVERF
FT                 RKFIFGRKFILQTDHRPLLTLFRTSKTKGLDTRTANRLKRWALRLIGYNFD
FT                 IEYVRTEHFGQADALSRLIQEARAESSDPELEEVVASLQQLETEIQQIVQE
FT                 SAQSLPKTTREELQRETYKDGILAEVIDRLQVGWQKSDTKDKDLLPYYRRR
FT                 QYLTVVEKTLVSDDKIVIPHSLRQAVLRQLHIAHPGIRRMVQLARRYFYWP
FT                 AMHADIEDFVKKCKHCAETAPNPTKEPLHPWPESKSPWERVHMDFAGPIHG
FT                 QWVLITVDSHSRFTDAEWFPTITATATCKYLRRLFSRYGPPKAIVSDNGTQ
FT                 FTAEEFAQLCEDFNIIHLRSPPRHPQSNGLAERMVNTLKRSLDLQVPSQRE
FT                 IKLNQFLYTYNYTPCEVAPDHKSPAEVFFGRKFRTPLEIFNPKSKSEGKLS
FT                 YQQKRMKNQFDTHHGARTRKFSPGQLVTVQLANGRRVPGKIIDCIGSTIAR
FT                 VRIGKDIIKRHFNQIWKRAVSSDERNETVNEELLPAVQNPVTDPSLSPLPF
FT                 EGANITYNKDVSAQEPAIRRSSRLADKDRPDYKKLGGVRRYGKRPS"
XX
SQ   Sequence 4358 BP; 1406 A; 929 C; 923 G; 1100 T; 0 other;
     ttcttcctta gtacgtatag atacttaagc tgttatttgg cacccaaagg acacaacaat        60
     tggcgctgcg gttataactc aattttgagg ttatacgaac cacgtataaa attcacgatg       120
     gatcagtact taagtgcgtt aacagaaagc cagcaaaagc tagcagaagg acagcaattg       180
     tttatgcaac aaatggttga gtcacaaaag cagatgatga gtttgctaac aaataaagta       240
     caaggtaatt ccgcttctac atcgtcgcag ttgggaacgg atagcaactt gtccgccccc       300
     cttgccaaat catcccagtt ttcaaatctg gctgaacgat tgggtaagtt tatccacgag       360
     ccgactaagg gcaaaacctt tacgctgtgg tacgagcggc acgaaagcac ctttatcgat       420
     ggtgcgagag gcttaacaga ggaagataga aagcagttac ttctaaatgc cctcggcgat       480
     gatgagtatc aacgattatt gagtcgttta tcaccttcca agccacacga tttaagtttc       540
     gcagatctcg tcaaacattt aaaaaagcaa tttcatgaca ataagtcact ttttcaacgt       600
     cggtttgaag ctttaaatta tcgagcaaca ccgtccgtgg ctgtaatcga cattcttgat       660
     cgaattagca tcatggggga tgcttttgaa attaataatt tcaatataga tcaactcaaa       720
     attttgcttg cagcactagc gttaagtgat catgcttatc agacagaacg tactcttctg       780
     tttaagatta cagccgaaaa ggaaaactgt acattcaatg acatcaaaga aatttgctat       840
     gctcatgtgg aacgtactgc cgatgtgaga cgagtcgagg atcaacattc tccggaaatc       900
     aacgctgtac aaaaatattc taaatccaaa ccaaaggaaa aggagaagga atcgaaacgt       960
     tacataaagc cttctacaag taaatcgtca ttttcacaat gtcgtggatg cggtctctca      1020
     actcacaaga gagatgactg cccttttaaa aattcagact gtaggatctg caagaagact      1080
     ggtcacatag caaaagtctg ttggtcaaaa ggtaaaaaga aggtcgaaag tattcatttt      1140
     aaaggtgttt caggaaccgg tcaacaacat agaaaatatg tggaaatctt gctaaacgac      1200
     aagcaaacta agatgcaact agacacaggc gcagatgtaa cagcgattgg atctaagata      1260
     tggacaaata taggatgtcc acctttgcaa ccttacaaat ctacttgcgt aaacgtctct      1320
     ggacacaagt tgaatacgaa aggatatttc aacgcaacct taagttacaa aggaaagatt      1380
     acaaaaaggc ctgttattgt gttaaatcgc ctaaatacag cacttataag tgcacaggta      1440
     atcgatgaac tcaagttggt agaatatgac caaggagtta caggaaatca attggccatc      1500
     aacacggtca aagatacttc cttgtcgaat aaattcccag aactttttag tgacgaaatt      1560
     ggggaatgta caaaggctaa agtcaagcta cgccttaaaa aagacgctta tccaattcac      1620
     gcacaacgcc gtccagttcc actcgcactg gaagaacagc tcaacgccga gatcgatcgg      1680
     cttattagta atgaaattct aactccaact gacacatcag agtgggcagc tccgattgtc      1740
     gtcgcaaaga aaccaaatgg aaaactacgc atttgtgctg attattccac aggattgaac      1800
     gaagcactag aatctgatga ttatcccatt ccaaatattg aggatatcat ggcaaaacat      1860
     cgagggaata caaggtttac tcagttggat ctctcagacg cgtatttcca aatgaaattg      1920
     gatgacgaaa gcaaaccttt aactacaatc aacacgcatc gaggactgtt tgtattcaat      1980
     cggctggttt ttggtctaaa accagcaccg gcaatattcc aacgcactct ggaacaagct      2040
     ctcgcagata taccaggtgt tctgatttat ctggatgata ttctcatcgg tggacgcgat      2100
     cgtctggagc atgacacacg tctaaacgct gttttgaata gacttcaaga ctggggtttc      2160
     aggttgagct tgggaaaatg taagtttcat acgtcatcag taaagtatct aggatttatt      2220
     atttcttcca gaggaatcga gccagatcca gcgcgtattc agccaatacg tgaaatgcga      2280
     gttccaaata attcaaagga agttagatca ttccttggac tagtcaatta ttacggaaaa      2340
     tttgtaccaa atctacatcg cttaaaggct ccgttggaaa cattattgaa aaaagatact      2400
     ccgtttagat ggacttcagc ttgcaatcaa gcttttcaca aggtaaaaga agttttattg      2460
     agtcctcttt tacttgcaca ttatgaccct gcacaaacgc taatagtcgc tgcggatgca      2520
     agtccgacag gtatcggtgg tgttttatta caacgctacc cagatggcca agtaaaagct      2580
     gtctttcaca tgtctaaggc tttgacgaag actcaacaag gttacagcca aattgaaaaa      2640
     gaagctttgg cgcttgtaac tgcggtcgaa cgattcagaa agtttatatt tggtcgaaaa      2700
     tttattcttc aaacggatca ccgaccccta ttaacgctat tccgtacttc aaaaacgaag      2760
     ggtttagata cccgtactgc aaatcgtttg aagcgatggg ctctccgcct tattggttat      2820
     aatttcgaca tcgaatatgt cagaacagaa cactttggac aagcggacgc cttatcgaga      2880
     ctcattcaag aggctagagc agaatcttct gatccagaat tggaggaagt agtagcttcc      2940
     ttgcaacagc tggaaacgga aattcaacaa atagtgcaag aatcagccca gagtctacct      3000
     aaaacaactc gggaagagtt gcaacgagaa acatacaagg acggaattct agccgaagtt      3060
     atcgatcgtt tacaagtcgg atggcaaaaa tccgatacga aagacaagga tctgcttcct      3120
     tattatcgtc gtcgtcaata cttaaccgtc gtagaaaaaa ctcttgtgtc tgacgataaa      3180
     attgttattc cgcacagtct tcggcaagct gttctacgac aactgcacat tgcacatcca      3240
     ggtattcgtc gaatggtaca gttggctcga cgttattttt attggcctgc gatgcacgct      3300
     gacatcgagg attttgtcaa gaaatgcaaa cattgtgcgg aaaccgctcc aaatcctaca      3360
     aaggaaccac ttcatccatg gccggaatca aagtcaccgt gggaacgtgt tcacatggac      3420
     tttgcaggtc caattcatgg acaatgggtg cttatcacag tcgatagcca ctcaagattt      3480
     acggatgctg aatggtttcc aaccattaca gcaacagcta cgtgcaaata tttgcgtcgt      3540
     ctattttcga gatatggccc accaaaggct atagtttctg acaatggaac gcagtttaca      3600
     gcagaagaat ttgcgcaact ctgtgaggac ttcaatatta ttcacttacg cagccctcca      3660
     agacatcctc agtcgaatgg gttagcagaa cgtatggtaa atacgctgaa acgctcttta      3720
     gatttacaag ttccgtcgca gagagaaatt aaattaaatc agttcctgta tacgtataac      3780
     tatacaccgt gtgaggtagc tccggatcac aaatctccag cagaagtatt ctttggacga      3840
     aaattccgta cgcccttgga gattttcaac ccgaaaagca aatcggaagg gaaactatct      3900
     tatcagcaga agagaatgaa gaaccagttc gacacccatc atggggcaag aactcgaaaa      3960
     tttagtccgg gacaattggt gacggtacag ctggcaaacg gccgtcgagt ccctggaaag      4020
     ataatcgact gcataggatc tacaatagca cgagtccgaa taggtaagga tatcatcaaa      4080
     cggcatttca accaaatctg gaagcgcgcc gtttcctcgg atgagaggaa cgaaacggta      4140
     aacgaggagt tgttaccggc agtacaaaat ccggtgacag atccctcatt gtctccccta      4200
     ccattcgaag gggccaacat cacctacaat aaggatgttt ccgcccagga accagctata      4260
     cggcgctcta gccgactcgc agacaaagat cgcccagatt acaagaaact aggaggagta      4320
     cgccgctacg ggaaacgtcc ttcttaacaa gggaggag                              4358
//
ID   Gypsy-26_SI-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_SI_;
KW   Gypsy-26_SI-I; Gypsy-26_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-216
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 443-443 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 216 BP; 48 A; 54 C; 67 G; 47 T; 0 other;
     tgttgggacc cttggggtct catgcagcgt gccgcccgaa cagacgccga gagaggtggc        60
     gctatcatga agggcgccga aaacgtgtgt gtgcgcgcct cgcggacaga gagtgtgtgt       120
     ggtttgaggc acgcgaagcg ggatgtggac gacttccacg ccttgtacga acatattcat       180
     tcttgtacct actcagagta cttactcaat aaacca                                 216
//
ID   Gypsy-26_SiCu-I repbase;    DNA;    INV; 10865 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-10865
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5049-5049 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..2434
FT                 /product="Gypsy-26_SiCu-I_1p"
FT                 /translation="MERTEKKGKIFRKGERESRRVKNQDPSFTGKLPETCR
FT                 KKRTKKLTDTSDNSDTEESQGVRTSTPKVYSDQSNLRSNFTPISLSQAGPS
FT                 TDTRINQRRRKLPINPAQGAKLLQNKLVPSLELESDSDIPPDGDNSFRPNL
FT                 TSSLGRLRRHSTPADSPSASRCQESSKVIPIPFNIDALELSASENRPGSFX
FT                 QHREVVEIPSENSSVIELDSHEKETSSSSSSASESESSISRSNQNSHSNSQ
FT                 FDVENARESLNKSFSPKYRQVLGQLLHKFIGKKGQNSSHITPESSTQNIPS
FT                 SSLSFTEKGSTNDQNHKKKHXAQSIFETSTSSSDSSDEPLEQTQRTPFVVC
FT                 QVTQQRQQVIRARQRNIIENASIWGNHYFNLRNFFPDEKPKATDFWEDSSF
FT                 LLQEPLELLFHIEEAKVDLGPDYFNSEMDGYLMPKYTAPRLTTSAVKLFFK
FT                 SFKLWADMKKLPDEVMKVTLPLAFNEKEASLWFQLNEQMLRDTTLKYDDIC
FT                 SAFIEDAPLHDDIQTNVYEVLAQKPEKGEGISSYLLRIRHALGNEFHKQPE
FT                 EQVVEKLLSQMPAHLVDWIAMRGNPDTFEALKKLVKEYEKRNFGETSVVST
FT                 AKIKTEPGINMLTRDXNDSSNEIKGVLSILCSEMAEMKAANAMKMQELQDK
FT                 LAQQTLERQSQQNQXEKNPNRKEDAGPSQGRGYQRDQRGRSYKQKRFNGIC
FT                 NFCKIQGHKEYQCRTKQAWMMQNGNGAFGNTXDGSQRTFYNSNMFPQNNAQ
FT                 PQQANWNQVPALNYNPQMLQYPQNQSGPKN"
FT   CDS           2389..6612
FT                 /product="Gypsy-26_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SSNASVPAESKWSKKLTEARPQAVPSPIQIVEVHGDA
FT                 QKQNHDIQNTQDKTIHADQTEKENNSFNFTISHLFEVACEYAKNHKLQGPA
FT                 LQLEINNQKYISLLDSGAICSCVRADVAESFPKRRIQNKVLALKSISNQKV
FT                 TYDGFAIIEIKVGEHIIEYPFIIIGELKMDILLGYDFFEEFRVKIDTENSI
FT                 MSSPTLGIITLASKKQNFLQTMDLEQYITLRKANAAENTRVSLLXSKVDSE
FT                 VIYAEIRHLGIQKHPERGKLITTTDCHIPPLSCVRIPVQALGTQDDKTCIM
FT                 TANKKLLRTNCIFVPDMLVSSDLDSIMVINSSSEIKHISKHTCLAREDKTQ
FT                 NNQSSSTFHEENNPHSLVSQPCLASLQAGSNDDEIRKLHKDTFDISQNITQ
FT                 ETRQKLYDLLFSYNDVFSWDEKHSTCTGFSYHLEVVGKPVQVNGFPKSEKE
FT                 HQIIDREVDKMLEKGIISPSHSPWRTYAFTVKQKDEQGNLKERCVIDFREI
FT                 NKKTRPLAFPLPRIDQIWEKVKTAKYITTMDLKSAFHQLPLDESSKEYTAF
FT                 STRKGLWQFNVLAFGLCNAPQAYMQMMHIILQNLIDTPYIAVYIDDLICAT
FT                 MSEATHLEYLEKVFQRLREHNLKIKPTKCKFMHEDIRILGLKHTADGYCME
FT                 EAQINAIKEIREPRTRKEVEKVLGLFSYFRRFIHKYANLAKPMHTLLSKTT
FT                 KFHWGEEQQKSFDSLKERLINPPILAHPVSGKEFILKTDACTDGIGAMCSQ
FT                 KDEEGXEKPVGFVSKSLNKHQKNWTTTELELLAIIHALKQFRHIIYGEKII
FT                 IHTDHAAICHLYKSAKFQHLSPKLTRMLLFLQGYDITAVVHVDGKSHAIAD
FT                 CLSRFSVDAPDQGDDTENICELNILSLSNDEFLQLQQDDEEIRKVREEIIS
FT                 GTNKGKHKNCFLQDDVVVFQKHDMHYAVPYIPSSLRAEIMYEAHDSLYSAH
FT                 PGIYKTYSRIACRYFWPQLRKEVTHYVRSCIQCQKSKAVRQTPAGLLEYVP
FT                 IPNDCFSTIVLDIAGPYPRTLKGKKYIATVSCGFSRYYIMEALSEATSEHI
FT                 ARFLVSKVILKYGMPHTVQTDLATNFTSKLTQDVLNLLGIKHKTSCPYHFQ
FT                 TQGKVEKQHDVVNEKMRIFVNDNFKNWDEFLDFFTFSINTSPNATTGFSPF
FT                 YLNHLREAAMPSQIHYGKSEFVLLQQLEEKRFMAHQLAAKAIHSSQHKQAA
FT                 YYNRKRRIVSFNVGDEVFVRRIAREKGKPTKLRKLFIGPFKVIEKSKNSEV
FT                 SYLIEYKTKRKSYLQWTHVERMRPFIPRNNDLFTFEPINDEEKEDKTSERA
FT                 KHLLSRNIYQINTTVVDEDDNEEISRPKDIQSERSAFSPPSQDILIPEIET
FT                 STQQQNSQSLNVSGFHDNTVDPPSSSQVPKSRYFFRTRKPIKYTK"
FT   CDS           6625..8694
FT                 /product="Gypsy-26_SiCu-I_3p"
FT                 /translation="MAIFMLLLVYIIGASQGTENTTVKLSTGVYLKQIDKI
FT                 FYEATANLIYTVELPQINNYLANHSCTDTSDNCEAYNHVKQLIQDTEELLN
FT                 YSLPNKEDLDFDSSMTRRGLDWAGSFLNWCCSVAEQNSLDSLAKDEGDLSK
FT                 LVDHLKNQVTVDHQAAVHNNDIVNRYSKQMEEYLNQQNVETRNRFGSVQKV
FT                 ASALDTRVTNLEDVISLLGKSQYRSVIAMTWLKVVQSCTDRRIPYYLVSPE
FT                 TLRDDLLVLENSLKKHNQTLARRVENLHDYFHFETTTCSFSKNKLVLRVQI
FT                 PIITQGTQYKLFSVTLLPFYFENSVCSISLDTDYFVYRNEKEIIPLKSHAA
FT                 EKCTPMQSELCYVNRFHSNVMHNQECLEVSVSRLSAVEQIKNACSFTCSSY
FT                 HQGDPIILQIEQNSFGIIAPGETVKVSCNNEHKITEKIEQQIGLYELDLNC
FT                 NCSALVGDKVVTPTFPCIRGDKTEVSLKQSIHAAWSNNDVNQVLVTRHSYY
FT                 KDIDNILNKEWHKSIPTTNLSSVPLLEYELPKHIEHGSYLSYFVAAVVIIL
FT                 IIVISVMYIKFVKLDPRQMVTSALALLAARQPGAQAAPILGHEGADLQNIF
FT                 DIMAILLLVGIFIVSILTYMLFRKSDFIAFTSAHFTHGKVKITAASDKKPN
FT                 EKYKATKKFGKKQGKLSPQNNHSVMSLVNDFSADNHAESTL"
FT   CDS           9132..10004
FT                 /product="Gypsy-26_SiCu-I_4p"
FT                 /note="zinc finger."
FT                 /translation="MAPRGTTPFLISLAMLMVLLINFYVNENSNFDFNVDN
FT                 AQHRGIVRQIQASLQRALDSLPEFTPEIPIKFRTTRKSHPFFPRRHQKIPC
FT                 AMENILVTATGDHRTATLIPRTSENNLNDAHSDNDSVSTVPTEVDETYRCE
FT                 ACDGLGHSEKGCPWLTPEALNELCAVLSNIRDGESRTPTPECDNQPQQAAV
FT                 RRTVRVERPVAGPSRQGRPNVLRIPNCQFCRQKGHRAESCRKLKFWRCPIC
FT                 NNSGHSGRFCPHKKCGHCGEQGHKTSQCLFEHRCSVCGMLGYGRDHCRRP"
FT   CDS           9832..10635
FT                 /product="Gypsy-26_SiCu-I_5p"
FT                 /translation="NFGAVQYVITPDIVDAFVPIKNAATVANKATKHHSAS
FT                 SSIDAPSVVCSATGGTTAAAHNFPLSPKKRKDLTKTQVVNSKNNFNILYKV
FT                 IHIRRMTPEEYFNSRREDPLRDALLKLMTAVLNNLMNIQGIAGGPLQKILS
FT                 PLLIAIIQFLTATKLLIDRVSVRDNNSPQSERTQNENEHSQPAKKKRVNWK
FT                 LESAKSNNTSSSDEEGDLLSLPPHRSPSPSNNHTSTATKKCFKCCQEGHLH
FT                 ADCTNKALSRSEKRRYGRKRAQHPSSC"
XX
SQ   Sequence 10865 BP; 3792 A; 2328 C; 2148 G; 2585 T; 12 other;
     ggtggagatg gctcgattcc taaccacgca gcaaagtgta gtcttacaat cccccgatac        60
     atcaaaggta tttagttaag aactccgaca aatggaaaga acagagaaaa aaggaaaaat       120
     atttcgaaag ggagagagag aaagtcgaag agttaaaaat caagatccca gtttcacwgg       180
     caaactgccc gagacctgca gaaagaaaag gactaaaaaa ttaacagata caagtgacaa       240
     tagtgataca gaggagtctc aaggtgttcg tacatctact ccaaaagtgt atagtgacca       300
     aagtaatctg agaagtaatt tcacaccgat cagtttatct caggctggtc ctagcacgga       360
     cacaagaata aatcagagac gacgaaagct gccaataaac ccagcacaag gggcgaaatt       420
     gttgcaaaat aagttagtac caagtttgga gttagaatct gatagtgaca ttccaccgga       480
     cggagataac tccttccgac caaatctgac tagctcacta ggacgcctca gaagacactc       540
     gactccagca gattctccaa gcgcaagcag atgccaggaa agtagcaagg taataccaat       600
     accatttaac attgacgccc tagaattatc cgcaagcgag aacagaccag gtagtttckc       660
     acagcacaga gaggttgttg agatacctag cgaaaatagt tcagttatag aattagattc       720
     acacgagaaa gaaacaagct catcttcatc tagtgcatca gagtcagaat cttctataag       780
     taggtcaaac cagaactcac attctaattc acaatttgac gtcgaaaatg cacgcgaaag       840
     cttaaataag tcattttcac caaaatacag acaagtatta ggacagcttt tacacaaatt       900
     tattgggaag aagggacaaa actcttcaca tattacccca gaaagcagca cgcaaaacat       960
     tccatcatcc tcactctcat tcactgagaa aggcagcaca aacgatcaaa atcacaaaaa      1020
     gaaacatwct gctcaaagca ttttcgagac aagtacctcg tcatcagatt cttctgacga      1080
     gccactagaa cagacacaaa gaacaccgtt tgttgtttgt caagtaactc aacaaaggca      1140
     acaagttatt agagcacggc aaagaaacat aatcgagaac gcatcaatct ggggaaatca      1200
     ctatttcaat ctcagaaatt tcttccctga cgaaaaacca aaggcgacag acttctggga      1260
     agatagtagt ttcctgttgc aggagccttt agaactctta tttcatatag aagaagccaa      1320
     ggttgactta ggtccagact atttcaattc agaaatggat ggctatctga tgccaaagta      1380
     cacagcaccc cgcctcacaa catcagcagt taagctattt ttcaaaagct tcaaattatg      1440
     ggcagacatg aaaaagttac cagatgaggt gatgaaagtg acactgcctt tagcattcaa      1500
     tgaaaaagaa gcatcacttt ggtttcagct caatgagcaa atgctcaggg acaccacact      1560
     aaaatatgat gacatttgta gcgcattcat cgaagatgca cctttgcatg acgatatwca      1620
     aactaatgtg tacgaggtgt tagcgcaaaa gccagaaaag ggagaaggca tttcttcata      1680
     tctactccgc atacgacacg ctttaggaaa cgaatttcat aagcaaccag aagaacaggt      1740
     tgtagaaaaa ttgctgtctc agatgccggc tcatctcgta gattggatag caatgcgagg      1800
     aaatcccgac acatttgaag cattaaaaaa gctagtaaag gaatacgaga agcgaaactt      1860
     tggtgagaca agcgtagtgt ccacggcaaa aataaaaact gaacctggca ttaacatgct      1920
     cactagagat wgtaacgact cmagcaatga aataaaggga gttttgagca ttttgtgcag      1980
     tgagatggcg gaaatgaaag ccgcaaacgc aatgaaaatg caagagctac aagataaact      2040
     ggcacaacaa actctagaga gacagagtca acaaaatcaa cmagagaaaa atccgaatag      2100
     aaaggaagac gcagggccct cacagggccg cggctaccaa agagaccaga gaggtcgaag      2160
     ctacaagcaa aagaggttta atggaatttg caatttttgc aagatccaag gtcataaaga      2220
     ataccaatgc cgcacgaagc aggcttggat gatgcaaaac gggaatgggg catttggaaa      2280
     cacaamtgac ggttctcaga gaacgtttta caactcaaat atgtttcctc agaacaatgc      2340
     acagccacaa caggcaaact ggaaccaagt tccagcctta aactataatc ctcaaatgct      2400
     tcagtacccg cagaatcaaa gtggtccaaa aaactaactg aggcacggcc ccaagccgtg      2460
     ccatcaccta ttcagatagt tgaggttcat ggggatgcgc aaaaacagaa tcatgatata      2520
     caaaatacac aagataaaac aattcatgca gaccagacag agaaagaaaa caattctttc      2580
     aatttcacga tttcacatct tttcgaagta gcatgcgagt acgcaaagaa tcacaaatta      2640
     caaggtcctg cgttgcaatt agagataaac aaccaaaaat acatttcctt actagattca      2700
     ggagcaattt gctcttgcgt aagagcggac gtggctgagt catttcctaa gagaagaatt      2760
     caaaacaaag ttcttgctct aaaatccatc tcaaatcaaa aagtcaccta cgatggcttc      2820
     gccatcattg agatcaaagt aggggagcac ataatagaat acccattcat tataatcgga      2880
     gaattaaaaa tggatattct gttaggctac gactttttcg aggaatttag agtgaaaatt      2940
     gatacagaga attccataat gagttcaccg acgttaggta ttatcacact tgcatccaag      3000
     aaacaaaatt tccttcagac aatggacctt gagcaatata ttactctgcg taaagccaac      3060
     gcagcagaaa acacacgcgt gtctctccta gawtcaaagg tcgacagcga agtcatttat      3120
     gcagagatta gacatcttgg catacaaaaa catcctgaaa gagggaaatt aataacaaca      3180
     acagactgcc acataccacc actatcttgc gtacgcatac cagtacaagc attaggtaca      3240
     caagacgata aaacatgcat tatgactgcg aacaaaaaat tattgagaac aaattgcatc      3300
     tttgtaccag atatgctggt aagtagcgac ctcgacagca taatggtaat aaattcctct      3360
     tctgaaataa aacacatatc caagcataca tgccttgcca gagaggacaa aacacaaaat      3420
     aatcaaagct caagcacatt ccatgaagag aataacccac attctcttgt aagtcagcct      3480
     tgccttgctt ccttgcaagc agggagcaat gatgatgaga tacgcaaatt acacaaagat      3540
     acttttgaca tttcacaaaa cataacacag gaaacgagac agaaactata cgatttgctc      3600
     ttttcttaca acgacgtgtt tagttgggat gagaagcaca gtacctgtac tggattttcg      3660
     taccatctgg aagtcgtagg gaaaccagtt caggttaacg ggtttccaaa atcagagaaa      3720
     gagcatcaga ttatagatag ggaggtagac aaaatgctgg agaagggcat catttcacca      3780
     tcacatagcc catggcgaac atatgcattc actgtgaagc aaaaagatga gcaaggcaat      3840
     ttgaaggaaa gatgcgtgat agattttaga gaaataaaca aaaaaacacg accccttgct      3900
     tttcctttac cccgaatcga ccagatatgg gagaaagtga aaactgcgaa atacattacc      3960
     acaatggatt tgaaatccgc attccaccaa cttcctcttg acgagtcgtc aaaagagtac      4020
     acagcatttt caactagaaa gggactatgg caatttaatg tattagcatt tggtttatgc      4080
     aacgcaccac aggcatatat gcagatgatg catataatac tacagaatct catcgacact      4140
     ccatacatcg cagtgtacat agacgacttg atctgtgcca caatgtccga agccacacac      4200
     ctggaatacc tggaaaaggt tttccagagg ctcagagaac acaatctcaa aataaagcca      4260
     accaaatgca agttcatgca cgaagacata agaattttgg ggctaaagca taccgcagac      4320
     gggtattgca tggaagaagc acagataaat gcaatcaaag agattagaga accaagaaca      4380
     agaaaagaag tagaaaaagt cttgggcctt ttttcatatt ttcggcgttt catccacaaa      4440
     tacgcaaatc tagcaaaacc aatgcatacg cttttgtcta aaacaacaaa atttcattgg      4500
     ggagaagagc aacaaaaatc attcgacagc ctcaaagaaa ggttaatcaa tccacccatt      4560
     ttagcacatc cagtaagtgg aaaagaattc atccttaaaa cagacgcttg caccgacgga      4620
     attggggcaa tgtgctcaca aaaagacgag gaaggccwgg aaaagcccgt tggcttcgtg      4680
     tccaaatccc tcaacaagca tcaaaaaaat tggacaacaa cagagttaga acttttggcc      4740
     attatacacg cattaaagca atttcgtcat ataatttacg gcgagaaaat aatcatacat      4800
     acagatcacg ccgcaatctg ccacttatac aaaagtgcaa aatttcaaca cctaagccca      4860
     aaactgacaa gaatgttgtt atttcttcaa ggatatgata tcacagcagt tgttcatgtg      4920
     gatggcaaga gtcatgccat agctgattgc ttaagcagat tcagtgttga tgcaccagat      4980
     cagggtgacg acacagaaaa tatttgcgaa ctaaacatcc tgtcattaag caacgatgaa      5040
     tttttgcagt tgcagcaaga cgacgaagag ataaggaaag tgagagaaga aataatatct      5100
     gggacgaaca aaggaaaaca caaaaattgt tttttacaag acgacgtcgt cgtgtttcag      5160
     aaacacgata tgcattacgc cgttccatac ataccaagca gccttagagc cgaaataatg      5220
     tatgaagcgc acgattcatt atatagtgca catcctggca tatacaagac atacagcaga      5280
     attgcatgta ggtatttttg gccacaacta agaaaagaag taacacatta tgtgcgaagt      5340
     tgcatccaat gccaaaaatc aaaggctgta cgtcagacac cagcaggatt gttagaatat      5400
     gtacctatac caaatgattg cttttcaact atcgttttag atatagcagg tccataccca      5460
     cgaacattaa aaggaaaaaa gtatattgct accgtatcat gtggattttc tcgctattat      5520
     attatggaag ccttgtcaga ggcaaccagt gaacacatag caagattcct agtctcgaaa      5580
     gtgatactaa aatacggcat gcctcacaca gtacagaccg atttagcaac aaatttcaca      5640
     tccaagttga cacaggatgt tttgaatttg ttgggcatca agcataagac cagctgtcca      5700
     taccacttcc aaacgcaagg aaaggttgaa aaacagcatg atgtggtgaa tgaaaagatg      5760
     cgaatttttg taaatgacaa ctttaagaat tgggatgaat tcttagactt ttttacattc      5820
     tccattaata ccagcccaaa cgcaacaacg ggattttcac ctttttacct aaaccatctg      5880
     cgtgaagctg caatgccaag ccaaatacac tacggaaaaa gcgagtttgt attattgcaa      5940
     cagcttgaag aaaaacgatt tatggcacat cagcttgcag caaaggccat tcattcatct      6000
     cagcacaaac aagcagcata ttataatagg aagcgtcgca ttgtttcgtt caatgttggt      6060
     gatgaagtct ttgttcgtag aatagctcgc gagaagggca aaccaacaaa gctgcgaaaa      6120
     ttgtttattg gaccattcaa ggtcattgag aaatcaaaga attcggaagt aagctatttg      6180
     atcgaataca aaacgaaacg caaatcttat ttgcaatgga cgcatgttga aagaatgcga      6240
     ccattcatac ccagaaataa tgacttgttt acttttgaac ccattaatga tgaggaaaag      6300
     gaagacaaga cctctgaaag agcaaaacat ttactttcaa gaaatattta tcaaatcaat      6360
     accactgtgg tagacgaaga tgacaatgaa gaaattagtc gaccaaaaga cattcagtcg      6420
     gaaaggtcag ctttcagtcc accctcgcaa gatattttaa tcccagaaat agaaacaagt      6480
     acacagcaac aaaattcgca atcacttaat gtgtctggtt ttcacgataa cacagtagat      6540
     ccgccgtcaa gcagtcaagt cccaaaaagt agatattttt tccgtacacg gaaaccgata      6600
     aagtacacga aataaagagc aagaatggcc atttttatgc ttctgctcgt atacattatc      6660
     ggtgccagtc agggtactga aaataccacg gtaaagctct ccaccggagt ttacctgaag      6720
     caaatwgaca aaatttttta tgaagctacg gcwaatttga tttacactgt ggagttgcca      6780
     caaattaaca actacttggc aaaccattca tgcacggaca cttcggacaa ttgcgaagcg      6840
     tataatcatg tcaaacagtt aattcaagat acagaggagc tcctaaacta tagtttacct      6900
     aacaaagagg accttgactt tgactccagc atgaccagaa ggggtcttga ctgggcaggg      6960
     tcatttttaa attggtgttg ctccgtagct gagcaaaatt cattagattc cttggccaag      7020
     gacgaaggag atctgtccaa gttagtggac catctcaaaa atcaggtaac ggtcgatcat      7080
     caggcggccg tgcataataa tgacattgta aatcggtact ctaagcaaat ggaggagtac      7140
     ctgaatcaac agaatgttga gactagaaat agattcggat ccgttcagaa agtagctagc      7200
     gcgttagata caagagtcac aaatttagaa gatgtgattt cattactagg aaaatcacaa      7260
     tatagaagtg taatagccat gacgtggcta aaagttgtgc agtcttgcac agataggagg      7320
     ataccatatt atttggtatc tcctgaaacg ctgagggatg accttctagt gttggaaaac      7380
     tccctgaaga agcataatca gactttagcg agaagagttg aaaatttaca cgactacttc      7440
     cattttgaaa cgactacctg ttcctttagt aagaacaagt tagtgctgag ggtacagatt      7500
     ccgataatca cacaaggaac gcagtacaag cttttctccg tgacactact gccattctat      7560
     tttgaaaatt cagtttgcag catttccctt gacactgatt actttgtgta cagaaacgag      7620
     aaagagataa tcccattgaa aagtcatgct gctgaaaagt gcacaccaat gcaatcagag      7680
     ttgtgctacg tgaatagatt tcatagcaat gtaatgcata atcaagagtg tttagaggtg      7740
     tcagtttctc gtctcagtgc tgtggaacaa attaaaaatg catgtagttt cacctgctca      7800
     tcataccacc agggtgaccc catcatactt caaatagaac aaaacagttt tggcatcatt      7860
     gcaccaggag aaacagtaaa agtttcttgt aacaatgagc acaaaatcac ggagaaaatc      7920
     gaacaacaaa taggattgta tgagctggat cttaactgca attgctcagc tttggtaggc      7980
     gacaaagttg tcacgcccac ttttccatgc attcgcgggg ataagacgga agtcagtttg      8040
     aaacaaagca tccatgctgc ttggagtaat aatgacgtga atcaagtact agtgacacgc      8100
     cattcttact acaaggacat tgacaacatt ttgaataagg aatggcataa gtccattccc      8160
     acaacaaatt tatcctcagt cccccttctg gagtatgagt tgccaaagca cattgaacat      8220
     ggctcatact tgtcatactt tgtcgcggca gtagtgatca tactcatcat cgtaataagc      8280
     gtaatgtata taaaattcgt gaagttagat cctcgacaaa tggttacgtc agcgcttgca      8340
     cttcttgctg cacgtcaacc aggagcccaa gcagcgccta ttttaggtca tgaaggcgct      8400
     gatctgcaaa atattttcga catcatggca atattgcttc tcgttggaat ttttattgtc      8460
     agcatcctaa cttacatgct gtttcgtaaa agcgatttta ttgccttcac atccgcacat      8520
     ttcactcatg gaaaagtaaa gatcactgct gcgagtgata aaaaaccaaa tgaaaaatac      8580
     aaagcgacga aaaagtttgg caagaaacaa ggcaaattat caccacagaa taaccattct      8640
     gttatgtcac tcgtaaatga tttttctgct gacaatcatg cagaatcaac tttataacta      8700
     ttattcgagt ggcattatct tgtaaatatg tgcatagttg cttttctaga cgaaaattaa      8760
     ttattaattt agtacgatat aagttaagaa tacgaaacaa gttattttag acagctcata      8820
     gtaatttata ttcttcatga ctcaaatcgc gtccggcaac tgaccaagaa ggtggtcacg      8880
     acgactcatt cagttcaaaa aaaggaaatt aaattaatta caaggaaccg gagacccaga      8940
     gcgtggtcac cctcttagct tccggaattt tcaataaggt attccaaatt tcagaagaga      9000
     aaataataat tcagaaaagt tatcaaacac gttatcaatc aaaagtacaa acaatttgag      9060
     ggagagggga aaccaaaaag aagtttcagt gcgtgtaaaa tctagagtgt gttatacttg      9120
     gctgataagg gatggctccc cggggcacaa cgccttttct cattagcctc gccatgctaa      9180
     tggtcttact catcaatttc tacgttaacg aaaactccaa cttcgacttt aatgtcgaca      9240
     atgcccagca caggggcatt gtaagacaaa tacaggcatc actccaacgg gctttagata      9300
     gcctacctga gtttactcct gaaataccaa ttaaatttcg aactacccgt aaaagccacc      9360
     ctttctttcc cagaagacac cagaagatac cctgtgccat ggaaaacatt ctggttaccg      9420
     ccacaggtga ccaccgaaca gccacactca ttcccaggac aagtgaaaat aatcttaacg      9480
     acgctcattc cgacaacgac tcagtgtcaa ccgttccgac agaggttgac gagacgtatc      9540
     gttgtgaggc ctgtgacggc ctgggacact cagaaaaagg gtgcccctgg ctgacgccag      9600
     aggccctcaa cgagttgtgc gcagttctat caaacatccg ggacggagaa agccgcaccc      9660
     caactcctga atgcgacaac caaccgcaac aagccgcagt tcgtaggact gtcagagtag      9720
     aaagaccagt agcaggtcct tctcgacagg gacgccccaa cgtcctccgc attcccaatt      9780
     gtcaattttg tcgccagaag gggcaccgcg cggagtcctg ccgaaaatta aaattttggc      9840
     gctgtccaat atgtaataac tccggacata gtggacgctt ttgtccccat aaaaaatgcg      9900
     gccactgtgg cgaacaaggc cacaaaacat cacagtgcct cttcgagcat cgatgctccg      9960
     tctgtggtat gctcggctac gggcgggacc actgccgccg cccataactt tcccctctct     10020
     cccaaaaaac ggaaagattt gacgaaaaca caagttgtaa atagcaaaaa caattttaat     10080
     attttatata aggtaattca tatacggaga atgactccgg aggagtactt caatagtagg     10140
     agggaagacc cacttcggga cgcgctgctc aagctgatga cagccgtact caataacctg     10200
     atgaatattc aaggtatcgc cggaggacca ctacagaaaa tcctctcgcc actcctcatt     10260
     gccatcatcc aattcctcac cgcaacaaaa ttgctcatcg accgtgtcag cgtcagagac     10320
     aacaatagtc cccaatccga acgcacgcaa aatgaaaacg agcacagtca acccgccaag     10380
     aaaaaacggg tcaactggaa actagaatcc gcaaaatcaa acaacaccag tagcagcgat     10440
     gaggagggag acctgctatc tctccctccc catcgctcac catctccttc aaacaaccac     10500
     acttcaacag caaccaagaa gtgtttcaag tgctgtcagg aagggcatct tcatgcagat     10560
     tgtacaaaca aagccttgtc cagaagtgaa aaacggcgtt acgggaggaa aagggcccaa     10620
     cacccatcat cgtgctagag gagtcaccgg actaacatca gctgctacac catcttccac     10680
     caaccagcta caatattcaa cacattttta tttataattc aaagttttag ttttacaaat     10740
     tcatttgctg tcacatcaca ctaacttaat acttatcatt ttgttgattt attataatat     10800
     taaggcatgt ctcgtttcgt atcccaaaga ctcgctctcc ggggctcgct cccggtgggt     10860
     ggtag                                                                 10865
//
ID   Gypsy-26_SiCu-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-253
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5103-5103 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 253 BP; 79 A; 48 C; 44 G; 82 T; 0 other;
     agtcagggat tcattgtaat tagcctaagt aatcattgta ttatagcgta agccaattat        60
     atatatatac ataattaacc ttgcgatgat aaaaagatga tgcttatgat tatgatcatg       120
     ctttgagaaa taaagatgat atgccttgcg cgcagtcgct cgcgggtcct cattgaaata       180
     agaatgaata actctctcgt ctctcatcga ttccttgctc tcacgctctc gattagaata       240
     gctactcata act                                                          253
//
ID   Gypsy-26_SiOr-I repbase;    DNA;    INV; 4043 BP.
XX
AC   .
XX
DT   03-DEC-2020 (Rel. 26.01, Created)
DT   03-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4043
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 335-335 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..2454
FT                 /product="Gypsy-26_SiOr-I_1p"
FT                 /translation="MENLFKPPEPLVLDGNVAENWKRFSQKFDIFSTATDL
FT                 ESKSEDKKVAVFLNLIGDEGLELFNSFSFENGDEKKLDKIREKFHEYCSPK
FT                 TNITFERYKFNSICQKEGQNFDNFLTELRKAIKTTQYKDHDDMIRDRIVMG
FT                 ILDKVIQERLLREPKLTLEKAVDVCRATESSKSQSKILRNESQVDAVQKNS
FT                 DQENNKKPCNFCGYKHGKSGKCPAYGKTCAKCQGRNHFAAVCRKKEVRPER
FT                 NNKTKEKKVHEVEACSCKVNTEDDDTSDEYFVDGIQSIGSVKANLCWKQEV
FT                 CVNNQLVEFKLDTGAEVSVLSLNLIEKLKLKDKINKTGVTLVSYGDNKFRI
FT                 KPQGEILLDCKVGENVAQVLFIVVDTLDQLPLLGLQACVDLKLIKKVASIN
FT                 VNCKSLDNVYFRSLDDIVNKYPSVFNGLGKYPTEHHITLKKDFVPHVQPLR
FT                 RIPHILRDRLKSKLNELEKQGVICKVDKPTEWVNALVIVEKTNGDLRLCLD
FT                 PKYLNKAIQREYFSIPTADEIAATLCNREFFTVLDMKDGYLQVKIDEESSD
FT                 YCTFATPFGRYKYCRLPFGLCSAPEVFQKKNYEIFGDIDGIGLYFDDIIVT
FT                 GKNEKEHDKNLHLVLERALSYGIKFNRNKIQFKCKSVKFMGQIYSKDGIKL
FT                 NQNYVEAILKLPRPESKSDLLRILGMAKFLGKFVPNMSKITSSLRDLTKIE
FT                 NEFNWLDIHEKSLNELKHLLTSAPILSFFDPSKNVEIETDASKDGLGACLL
FT                 QDGHPIAFASRSLSSAEKKYAQIEKEMLAIVFSIQKFHFFVYGWT"
FT   CDS           2418..4031
FT                 /product="Gypsy-26_SiOr-I_2p"
FT                 /translation="YTEISFFCLWLDVKVNTDHKPLEAIFCKDLASITPRL
FT                 QRMRLRLLNYKLSVSYKPGKYLFIADTLSRAFLLDTGLKSDREFDYVIHCI
FT                 NKYLPMSETRKCQFKNALSNDKDLQLVIKYCENTWPEQKKKVPLNIWKYFH
FT                 LRDKLFVSDSLLFLDNKIVVPQELRKEMLKLLHEGHFGIEKTKSRARQIFY
FT                 WPRMTYDIESFIKDCRICETYAKRHQKETLMLYPISSRPWERIGLDIFTFN
FT                 NQSFLIAFDSFSNWLEVLPIKDKSAKSVILVLRRVFSTHGSPDCVISDNVP
FT                 FNSCEFKSFAREWNFEVVTRSPNYPRSNGLAERGVGIAKNIIKKSEGKSDG
FT                 LDIALLQYRNSPLKYIDYSPAQLLMSRNCKTKLPSNNEFLKPKLCQNVYEK
FT                 LQERQNCYKKYYNRQAKDLKPICPNADINVYNHVKKKWEPGQVICEHSTPR
FT                 SYLIKDSENNVVRRNRIDLKESTNKFVPNVPPLYECSTSNSNLKNVEQPAE
FT                 LVEGLPEADLEIELDKCPSITKQLIPKTRSGRVVRKPQKLDL"
XX
SQ   Sequence 4043 BP; 1521 A; 522 C; 763 G; 1237 T; 0 other;
     tggtgtcagg ctggtacggg taaaaattcc gctagaaaaa caattaagaa gaaaattgta        60
     aaaaaaatgg aaaacttgtt caaaccccca gaacccctag tcttagatgg aaatgttgca       120
     gagaactgga agagattcag ccaaaaattt gatatatttt caacagcgac agatctagag       180
     tcgaaatctg aagataagaa agtggcagtc tttttaaacc tgataggtga cgaaggacta       240
     gaattattta atagtttcag ttttgaaaat ggagacgaga aaaagttaga taaaatcaga       300
     gagaagtttc atgaatactg ttcaccaaaa acaaatatca cgtttgagag gtacaaattc       360
     aacagtatat gccaaaaaga aggtcagaat tttgataatt tcttaacaga attaagaaaa       420
     gctattaaga caacacaata caaggatcat gatgacatga taagggacag aattgtaatg       480
     ggaatactgg acaaagtaat acaagagaga ttgttacgag aaccaaaact tactttagaa       540
     aaagcagtag atgtttgcag agcaaccgag tcaagtaaat cgcagtcaaa aatattaaga       600
     aatgaaagtc aagtggatgc tgtacagaaa aatagtgatc aagaaaacaa taagaaacca       660
     tgtaactttt gtgggtacaa acatggcaag tctggtaaat gtcctgcata tgggaaaaca       720
     tgtgcaaaat gccaaggtcg gaatcatttt gctgctgtgt gtaggaaaaa agaagtcaga       780
     ccagaaagaa acaacaaaac caaggagaaa aaagttcatg aagttgaagc atgtagttgc       840
     aaggtgaata ctgaagatga tgacacaagt gatgagtatt ttgttgatgg tatacagtca       900
     atcgggtccg taaaagcaaa cttatgttgg aagcaggagg tatgtgttaa taatcagtta       960
     gtcgagttca agttagatac aggtgctgaa gtgagtgtat tatcacttaa cttgattgaa      1020
     aaattgaaac tgaaagataa aataaataaa actggagtta cccttgtatc atatggtgat      1080
     aataagttca gaattaaacc acaaggtgaa attttattag actgtaaagt tggtgagaat      1140
     gtggctcaag ttttatttat tgtagtagat acacttgatc aattaccttt acttggactt      1200
     caggcttgtg tagatttaaa attaataaag aaagtagcta gtataaatgt taattgtaaa      1260
     tctcttgata atgtatattt tagatctctt gatgatatag taaataaata tcctagtgtt      1320
     tttaatgggt tgggtaaata tccaacagaa catcatatta cattaaagaa agattttgta      1380
     ccgcatgtgc aaccgctcag aaggattcct catattttac gagatagact aaaaagtaag      1440
     ttaaatgagc ttgagaaaca aggtgtcatt tgtaaagttg ataagcctac tgagtgggtg      1500
     aatgcacttg tgattgtgga aaaaacaaat ggtgatttgc gtctttgttt agatcctaag      1560
     tatttaaata aagcaattca aagagagtat ttttcaatcc caactgcaga tgaaatcgct      1620
     gctaccttat gtaacagaga gttttttact gtgttagata tgaaagatgg atatctacaa      1680
     gtaaagatag atgaagaaag ttcagattat tgcacttttg ctactccatt tggtaggtac      1740
     aaatattgtc gtttaccttt tggattgtgc tccgcaccag aagtgtttca aaagaaaaat      1800
     tatgaaatat ttggtgacat tgatggtatt ggattatatt ttgatgatat aattgtcaca      1860
     ggaaaaaatg agaaagagca tgataaaaat ttgcacttgg tattggaaag agctctcagt      1920
     tatggtatta aatttaatag aaataaaata cagtttaagt gtaaatcggt taaatttatg      1980
     ggtcaaattt attctaaaga tggcataaaa ttaaatcaaa attatgtaga agctatatta      2040
     aaattgccaa ggccagaaag taaatcagac ttattaagaa ttttaggaat ggccaagttt      2100
     ttaggcaagt ttgtgcctaa tatgtctaaa attacttcct ccttaagaga tttaactaaa      2160
     attgaaaatg agtttaactg gctagatatt catgagaaat cattaaatga gttaaaacac      2220
     cttttaacat cagctccaat attgtcattc tttgatccaa gtaaaaatgt agaaattgag      2280
     actgatgcat ctaaagatgg gttaggagcc tgtttactcc aagatggaca ccctattgca      2340
     tttgcgtcta gaagcttgag ttcagctgag aaaaaatatg cccagattga aaaagaaatg      2400
     ttggcaattg tttttagtat acagaaattt catttttttg tttatggttg gacgtaaaag      2460
     tcaacactga tcataagcct ctagaagcaa ttttttgtaa agatttggca tcaataacac      2520
     caagattaca aagaatgcgt ttacgtttat taaattataa attaagtgtg tcatataagc      2580
     caggtaaata tttgtttatc gcagataccc tatcacgtgc ttttcttctt gatacaggat      2640
     taaaatcaga cagagaattt gattatgtta tacactgtat taataagtat cttcctatgt      2700
     ctgaaactag gaaatgtcag tttaaaaatg ctttaagtaa tgataaagac ctacagttag      2760
     taatcaaata ttgtgaaaat acatggccag aacagaaaaa gaaagttcct ctaaatattt      2820
     ggaagtattt tcatttaaga gacaaacttt ttgtttcaga tagtttatta tttttagaca      2880
     acaaaatagt tgttcctcaa gaacttcgta aagaaatgct aaaattatta catgaaggtc      2940
     attttggtat cgaaaaaaca aaatcgcgag cacgtcaaat attttattgg cctagaatga      3000
     cttatgatat tgaatcattt ataaaagatt gtagaatttg tgaaacttat gctaaacgac      3060
     atcagaaaga aacattaatg ctgtatccta tttcaagtcg accgtgggaa agaattggct      3120
     tagatatttt tacttttaat aatcagagtt ttctaatagc atttgattca ttctctaatt      3180
     ggcttgaagt attacctatt aaagacaaat ccgcaaaatc tgtaatttta gttttaagaa      3240
     gagtattttc tactcatggt tcgccagatt gtgtaatttc tgataatgtt ccttttaaca      3300
     gttgtgaatt taaatcattt gctagagagt ggaattttga agttgtaaca agaagtccta      3360
     attatcctcg ctcaaacggt cttgctgaaa gaggagtagg tattgcgaaa aatataatta      3420
     aaaaaagcga aggcaaaagt gatggccttg atatagcatt gttacagtat cggaactccc      3480
     ctctcaaata tattgattat agtcctgcac aattacttat gagccgtaat tgtaaaacta      3540
     aattacctag taataatgaa tttttaaaac caaaattgtg tcaaaatgtt tatgaaaaac      3600
     tacaagaaag gcaaaattgt tataagaaat attacaatag acaggctaaa gatttaaaac      3660
     cgatttgtcc taatgcagat attaatgtat ataatcatgt aaagaagaag tgggaaccag      3720
     gtcaagttat ttgtgagcac tccactccaa gatcgtattt aatcaaagat agtgaaaata      3780
     atgttgttag aagaaataga atcgatttaa aggaaagcac aaataagttt gttcctaatg      3840
     ttccacctct ttatgaatgc tctactagta atagtaattt aaagaatgtc gaacaaccag      3900
     cagaacttgt ggaaggatta cctgaagctg atctagaaat tgaacttgat aaatgtccta      3960
     gtataactaa acagctgatt cctaaaacaa gatctggtag ggttgtaaga aaacctcaaa      4020
     aactagattt atgatggggg aga                                              4043
//
ID   Gypsy-26_SiOr-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-219
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 395-395 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 219 BP; 67 A; 40 C; 38 G; 74 T; 0 other;
     tgtgtgataa gaggcgacat gtccctatca tttaagtgca gtagctctct agttgacaat        60
     agacgcaaaa cagtcatctg tagctagata ctagttggtc acgtaggcac gaatatatct       120
     gcacattttc taattgttgt aactcccttt tattgttatt tggtaacacg gaatactact       180
     aactagtata gttttatttc aagaccataa catattaca                              219
//
ID   Gypsy-26_SpEx-I repbase;    DNA;    INV; 4765 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4765
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4095-4095 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..4182
FT                 /product="Gypsy-26_SpEx-I_1p"
FT                 /translation="MTDKDESNMQLQFPNYNMAESIVKFTGEDMTYSSSKW
FT                 AQDIEDNAEIFGWTAQQKLIIARRSLSGTAELWLRTEKPFRTYEDLKTALQ
FT                 KEFPDAANTKQMHEIMSTRKKRSGESYYQYMLTMKELGKRAKFPDYVAIQY
FT                 IVDGITDYEQNKMCLYGITTYAALKEKLSHYETMKQKMKQRGNQNSVSASK
FT                 PRESRKPTVTSDNANRSNERAFHRCFSCGERGHMASACNKGIKCFKCNNFG
FT                 HLATECSKAANATNDASGSGNRNSRNVGSTGANGANFRSRRVSMIVHQPSE
FT                 DGAGARATMVNGFGDDIDPIIDQVSERELSNVKSVGHSCQCQNNLDNNVLS
FT                 VNNNNAVVNKSVKSVKVGDFIVNCLVDTGSDVNLISNELFSKLSDVDCVPD
FT                 KISLTGLGSGRVFSIGKCIIQLIIDSFCYSVCFHVVPSGTIPYSMILGQAF
FT                 LVDTVMLIEKGIVRIKPYDYDSSFLQCLLSSIDTNDIPPQLQRIIDNYVPV
FT                 KVKEAPIKLKIILKDDIPVAQRPRRFALKEEEEVKKKIEEWLSQGIIRPSF
FT                 SEYASPLVLVKKKDGSIRVCVDYRKINQKMVKHEYPLPVIDDHIDKLSKAL
FT                 VFSTLDLKNGFFHLPIEEDSIKYTAFVTSNPEGQFEFLRAPFGLSICPKYF
FT                 TRFINIIFADFIKRGVLLIFIDDLIILAENESQAFQRLEEVLKVASEYGLD
FT                 INWKKSQLIQRSVEYLGHVISAGSVKPSKDKTDAVLKFPVPRNLKEVQSFI
FT                 GLTSYFRKFIPNYARIARPLSELLKSKEFYFNEDQRTAFEKLKQLLCCEPV
FT                 LKIFDIQLETELHTDASKLGYAAVLMQKDSTDGSLHPVHYMSRKTTDIQQK
FT                 CSSYELEALAVIEGVKKFRKYLIGIPFKIVTDCEAFQKTLAKKEVCAKVAR
FT                 WIMYLQDFNYTIEHRKGEKMQHVDSLSRNICIINTELTYRIKKAQEEDETL
FT                 KILKEILKEKEYEDYNLENDIIYKGVDKKLVIPDAMDIEIIKMAHGMGHFG
FT                 KKKVKDIIEKDYFIHKLDNKIEKVISTCIPCILASRKSGKKEGLLNPIDKG
FT                 EVPLDVLHCDHLGPLDATKKMYNYILTVIDAYTKFVWIYPVKTVTSKETVD
FT                 KLKLHQKDFGNPRRIITDRGTAFTGREFQEYCDEEGIEHIKITTGIPRGNG
FT                 QVERMNQTIISVLAKLCVEEPTHWYKHVSRLQQVINGSYQRSINTSPFKLM
FT                 TGVDLKHKNDMKIIELLEEENRLMFIGKREELRKAAKAQILKIQEENRKTF
FT                 NKRRKEGQIYKQGDLVAIQRTQFGSNLKLKEKFFGPYRVIKELGKDRYEVE
FT                 KIDNSKEGPKRTTTGVDYMKRWL"
XX
SQ   Sequence 4765 BP; 1633 A; 765 C; 1019 G; 1346 T; 2 other;
     atctcgtccg ggataggcca aataaataac gattcgatca agacgctatt kactgaagac        60
     gttcaccggc cgccgtgtgg tggtggattt ggtgattttc cccaaatcgt ttgaagacga       120
     ttaagacgaa gaagtttcta cccaattcaa gaagacgcac gacgtttgta ttgcatcatg       180
     acggacaaag acgaatctaa tatgcaatta caatttccga attacaatat ggcggagtct       240
     attgtaaaat ttacgggcga agatatgacg tattcatcat cgaagtgggc gcaggatatc       300
     gaagataacg ccgaaatctt cggatggaca gcccaacaaa aacttattat cgcgcggagg       360
     tcgctgtcgg gcacggctga gttatggtta cgaaccgaaa aaccattccg aacctatgaa       420
     gatttaaaaa ctgccctcca aaaagagttc ccggacgcag ccaataccaa gcaaatgcac       480
     gaaataatgt ctacacgcaa aaaacgaagc ggtgaaagct attaccagta catgttaacg       540
     atgaaagagc tgggtaagag ggcaaagttc cctgactatg tagctattca gtacatagtc       600
     gatggtatca cggattatga acaaaacaag atgtgtcttt atggaattac tacttacgct       660
     gccctgaaag aaaaattgtc ccattatgaa actatgaagc agaagatgaa acagcgagga       720
     aatcaaaaca gtgtgagtgc gagtaagcca cgggaatccc gaaagccgac tgtaacaagt       780
     gataacgcaa atcgatcgaa cgagagggcc tttcatcgat gtttcagttg tggcgagaga       840
     ggtcatatgg cgagtgcatg taataaaggc atcaaatgtt tcaagtgtaa caactttgga       900
     cacttggcga ccgaatgcag caaggctgcc aacgcaacga acgacgcaag tggatcgggg       960
     aatcgcaact ckcgcaacgt tggcagtact ggagcaaacg gtgctaactt ccgatcgcgg      1020
     cgagtgtcta tgatcgttca tcaaccgagt gaagatggcg caggtgcgag agcaacgatg      1080
     gtgaatgggt tcggtgacga catcgatcca atcatcgatc aagtgagtga acgtgagttg      1140
     tcaaacgtca aatcggtcgg tcatagttgt cagtgtcaaa acaacctcga taataatgtt      1200
     ctaagtgtaa acaataacaa tgcggtggta aataaatctg ttaaaagtgt taaagtagga      1260
     gacttcattg tcaattgttt agttgatacg ggtagcgatg ttaatttaat ttcaaacgaa      1320
     ttgttttcga agttatctga tgtcgattgt gttcccgata agataagtct aacggggtta      1380
     ggatcaggtc gggtgttttc tatcggtaag tgtattattc aattgattat tgatagtttt      1440
     tgctacagtg tatgttttca tgttgtgcca tccggcacta ttccatactc catgatcttg      1500
     ggccaggcat ttttagtaga tacagtcatg ttaattgaaa aaggtattgt tcgaataaag      1560
     ccttatgatt atgatagttc ctttctacag tgtttactct caagtattga taccaatgac      1620
     attcctcctc aacttcaaag aattattgat aattatgtgc ctgtaaaggt taaagaagct      1680
     cccataaaat taaaaataat attaaaagat gatataccag tagctcagcg gcctcgtagg      1740
     tttgcactta aagaagaaga agaagtgaag aagaaaattg aagagtggtt atctcaaggc      1800
     attatacgac ctagcttttc tgaatatgcc agtcctcttg ttctggttaa gaagaaggat      1860
     ggaagtatac gtgtctgtgt tgattacagg aaaatcaatc agaagatggt taaacatgaa      1920
     tacccattgc ctgtaattga cgatcacatt gataaattgt ctaaggctct ggtgttcagt      1980
     acattggacc tgaaaaatgg attttttcat ttaccaattg aagaggactc aattaagtat      2040
     acagcctttg tgaccagcaa cccagaagga cagtttgagt tcctgcgtgc tccttttgga      2100
     ctttccatat gccctaaata ctttaccaga tttatcaaca taatatttgc tgacttcatt      2160
     aaaagaggtg tacttttaat attcatcgac gatttgatta tcctggctga aaatgaatcc      2220
     caggcattcc agaggctgga agaagtatta aaagtggcat cagagtatgg acttgatatt      2280
     aattggaaaa aatcacagtt gatacaaaga tctgtggaat acttggggca tgttatctca      2340
     gcagggtcag tgaaaccttc aaaagacaaa acagatgcag tcttaaagtt cccagtgcca      2400
     agaaatctta aagaagtaca aagttttatt ggattgacat catactttag aaaatttatc      2460
     cctaattatg ccagaatagc cagaccatta agtgaattat tgaagagtaa agaattttat      2520
     tttaatgaag atcagagaac tgcctttgaa aaactaaaac aattattgtg ttgtgaacct      2580
     gttttaaaga tatttgacat ccagttggag actgagctcc acaccgacgc ttcaaagctt      2640
     ggctatgcag cagttttaat gcaaaaagac tccactgatg gtagcctaca ccctgtgcat      2700
     tacatgagta gaaaaaccac tgatatacag caaaagtgta gtagctacga gttggaagcg      2760
     ctggctgtta ttgaaggcgt aaagaaattc aggaagtacc ttattgggat acctttcaaa      2820
     atagtcactg actgtgaagc cttccagaaa acactggcaa agaaggaggt ctgtgctaag      2880
     gttgcacgat ggatcatgta tttgcaagac tttaattaca ccatagaaca cagaaaaggt      2940
     gaaaagatgc agcatgttga ttctttgagc agaaacattt gcatcataaa cacagaatta      3000
     acctaccgaa taaagaaagc tcaagaagaa gatgaaacac tgaagatttt aaaagaaatt      3060
     ctcaaggaaa aggagtatga agattataac ttagaaaatg atatcatata caaaggagtt      3120
     gataagaagc tagtgatacc cgatgctatg gacattgaga taatcaaaat ggctcatggt      3180
     atggggcact ttggaaagaa gaaagttaaa gacatcattg aaaaagatta ctttattcat      3240
     aaattagata acaaaattga aaaagtgatt tcaacatgca taccttgtat actggccagc      3300
     cggaagtcag ggaaaaagga agggctgctg aatcccattg acaaaggaga ggttcccttg      3360
     gatgttttgc attgtgatca tctgggacca ttggatgcaa ctaaaaagat gtacaactac      3420
     atacttacgg tgattgatgc atacaccaag tttgtttgga tatatccagt gaagactgtg      3480
     acctcaaaag agactgttga caaacttaaa ctacatcaga aagattttgg taatccccgt      3540
     cgtataataa ctgatagagg taccgcattt actggaaggg aatttcagga atactgtgat      3600
     gaagaaggaa ttgagcacat aaagataact acaggcatcc cacgaggcaa cggtcaagtg      3660
     gaacggatga atcaaaccat tatttctgtc ctggctaaat tatgtgttga agaacccaca      3720
     cactggtaca agcatgttag caggctgcag caagttatta atggttctta tcagcggtct      3780
     atcaacactt caccatttaa gctgatgact ggagtcgacc tgaaacataa aaatgatatg      3840
     aaaataatag aattattgga agaggaaaat aggcttatgt ttattggaaa aagagaggaa      3900
     ttaaggaagg cagcaaaggc tcagatttta aaaatacagg aagaaaatag aaaaacattt      3960
     aataaaagaa gaaaggaagg tcagatctac aaacaaggtg acttagtagc cattcagcga      4020
     acacagtttg ggagtaacct aaaattaaaa gaaaagttct ttggtccata tagggtaata      4080
     aaggaattag ggaaagatag atatgaagta gagaaaatag ataatagtaa agagggtcct      4140
     aagagaacaa ctactggggt agattatatg aaaagatggc tttaattgaa caatattact      4200
     tacctttagt ttgcattctt attcaggtga tatcttgaat tatattgtta ttaaaactta      4260
     ctatttgaaa atgattaact taccatttta ttctggaaat aaattgtgtt aagtcactat      4320
     gataatagta cttacctgta acctgttagt catttgtttt gctatatgtt gtaagatgaa      4380
     tagactgtta attaagttta cttaaatgtt tcacatacca ttgttattga gtttcctttt      4440
     aaagcttgtt aattaatact gtattaagcc ataccctaaa tagacttgca tctaggttgt      4500
     aacttgtagt tactgttagt tataagaact ataacaaata aaaatgttac ttaaaaatat      4560
     tgtattaagt tagaatatgt gtgagatgtg tttgcagaaa tataaagaag ttgttacttt      4620
     ttagtttagt ttgaactttg tattgtaatc ggttaaacat tgtttttttt tttttgttgt      4680
     ttcttaatgt aacttaaggc taatcattgt aattttcttt aacgaaagtc agtctgaggt      4740
     cagactgagg gcagaatggc cgagt                                            4765
//
ID   Gypsy-26_SpEx-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4155-4155 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 217 BP; 71 A; 27 C; 49 G; 70 T; 0 other;
     tgtaggctaa aaaccttgta tccaggtttc tttacttttt tgtgaacgag tgatgtgtga        60
     acaggagaga atgaatgatg aagacggact agacggacag aggaaggaag acgttttttt       120
     ctaagaagta ttttgttttt ttgtagaaga agtgaaaata aaataaagaa gtcattatat       180
     tcgagccacg ttattttatt tcggcctcaa tcctaca                                217
//
ID   Gypsy-26_TrNi-I repbase;    DNA;    INV; 5749 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5749
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 229-229 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1384..5535
FT                 /product="Gypsy-26_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLNRKSRADETLRDYFYDKLSLLSRCEIVGRKAVDCI
FT                 IYGINDSSVRNGAQALKCEEPEDLLNYLASQQSTVIKDSNKGLSIYNSNTY
FT                 RKRDFRQNNNTASYSNSSKGNDFVCFNCNERGHTYHSCTKPLVKCEKCGRV
FT                 GHNLDICTRKPLQSHLSGQNSQATDKKVLKVLTNEHSDLTXVKGIDEFPSX
FT                 VNKSIANDSNQKFNKSVCVNGVMLKAYVDFGSDCSLIQQSTAIKLNLVQCR
FT                 ENLPVIRGFGDSTVKPKFKSTVNVRIDEIETDLIVLAVEDSYLQVDFLIGQ
FT                 NFTELESVTVLKDKDSLFFYHTSTDETIKRDNVLNLYVLNDVTIRKGGLIE
FT                 IYTKEPYSGDIYSDGSTRMSPNQEYHLHQGCYRVLDSKAQIFVTALTNSAL
FT                 EFKAHSLIARVSPVTEAKTCTVQMALTXLAPLDRNEIKVGDSIDGTIKERL
FT                 YELLQKYRTCFATXLRELGCAKDTMMTIDLQDTTPVIYRPYRLSHDERQKV
FT                 RNIIDELIENDIVQESNSNYASPILVVKKKNGESRLCVDYRALNNKTIKDK
FT                 YPLPLIDDQLSNLSGNRFFITLDLASGYYQIPMGEESRHLTAFVTPDGHYE
FT                 FKRMPFGLANAPAIFQKMMNRLLGPRRFKSALAYMDDLLIPSVSIDEGFER
FT                 LEDVLKIIQEAGLTLKLEKCSFFDTTIEYLGYEISADGIKPSERKIIAVRD
FT                 FPVPRNAHEVRQFLGLASYFRRFVKGFGEIARPLTSLLKKDVQWQWCDGEA
FT                 KSFTVLKERLVQRPLLALYNPSLDTEVHTDASALGLGGILMQWQTSPKVLK
FT                 PVAYFSRQTTPEERYFHSYELETLAVVCSLKKFRPYLLGLHFRVLTDCNAL
FT                 RTTLTKRDLIPRIARWWLTISEYNFSIEYRPGCRMSHVDALSRNPPNKSVS
FT                 TEVDARTLNINTDNWILTLQLADPKLEHIFKILKPNVDPDVLEIKKNYVIK
FT                 NHTLYRKIGEELRLVVPKDVRWQICKANHDDVGHFGXAKTLDLIQSRYWFP
FT                 KLRRFIKKYVAACVDCAYNKDKASRTRTGYLHPIEKVAQPFHTLHLDHLGP
FT                 FVKSKPGNSYILTIVDGFTKYLFARAVKDTKTKTVVKVLDCLFNDFGVPNR
FT                 IISDRGTAFTSSSFKDFCXQKGIKHILNAVACPRANGQAERFNQTILTALS
FT                 TQNSGNDERDWDMQLGKVQWGINNTVNATTKKSASELLFGTKLNGPLDNKL
FT                 TTVNTDVEPTVSSLKGARQDSVHNXSNCHSPKSPEGAVASNELAPNFSDID
FT                 KIRQEASVNIELSQERQKSIYDSKRSPAVMYXIGDLVKITKTNFKNDGKSK
FT                 KLLPKFIGPYRVTKCLGNDRYEISNVPGFKNSKYNSVIASDRMRPWIHVPA
FT                 LEVXRSSGSELSSPSDSDDDK"
XX
SQ   Sequence 5749 BP; 1746 A; 1041 C; 1255 G; 1679 T; 28 other;
     attcagaagc gggaaaacct gcgagcagct gcaatgtccg ataaaaaccg taagtaaact        60
     tttgcattaa gatttatagt acagtgatta agatcaagtt actatcccgt tagaaccatg       120
     ctcggtgmwt attttcgttg tagtttacct tatmaatgca ccttccacca tgtaggtgtg       180
     ctgatggtga atatttttgg tagccatgta tgtgtgcttt gattccacca gccatgtagg       240
     tgtgctgatg atgaatattt ttggtagcca tgtatgtgtg ctttgattcc accagccatg       300
     taggtgtgct gatggtgaat atttttggta gccatgtatg tgtgctttga ttccgtcggc       360
     catgtaggtg tgctgatggt gaatattttt ggtagccatg tatgtgtgct ttgattccac       420
     cagccatgta ggtgtgctga tggtgaatat ttttggtagc catgtatgtg tgctttgatt       480
     ccgtcggcca tgtaggtgtg ctgatggtka atatttttgg tagccatgta tgtgtgcttt       540
     gcttccgtcg gccatgtagg tgtgctgatg gttaatattt tttttttttt tagccatgta       600
     tgtgtgcttt gattccgtcg gccatgtagg tgtgctgata gtgaatawtc ttggaagcca       660
     tgtagttttg ctgttgctaa gtttacattg ccacatacat gtagatgtac agccatgtag       720
     gtgagctgag atgttagaaa taaaaatacc ctaacataac ataatcttaa agatatataa       780
     gactgagttt tatccctacg atactcttga gttaagctga gttagttggc actgcaataa       840
     agtaacacat ttgtgtcttt tgacgtttat ttgagtgctt agttaacaca gatawaagga       900
     tttwtcggaa aaggacatga agttttgtaa aaatattttc caggcaatcg agattcaagc       960
     tacacccctc caagacgttc cagtcgtaga cgcacgagat cagagtcgag tgatgaggta      1020
     caagcgccta gaaagaaaca gaagaggtcc aagggattaa cggctgacga tttgttaaag      1080
     attgtctctg cactacaaaa tggctcaagt aagaatactc caagcactaa tgtagttcca      1140
     gagtttaatc ccgataataa atcccaagat gtagatcggt ggctacggaa ggttaatgag      1200
     tgcgcggtta tttacaactg ggataccaaa caaactattc actatgcgct tcagaaactt      1260
     tgcggtttag cgaaaagttg gtatgagtca cttccatccc tcgactataa ctgggacgaa      1320
     tggcagagca aattaagaag ggcttttccg aatgacatca attttggtaa attacttgaa      1380
     gaaatgttaa accgaaaatc tcgcgctgat gaaacattaa gagattactt ctatgacaaa      1440
     ttatctttat tgagtaggtg cgagattgtc ggtcgaaagg cagtagactg cattatttat      1500
     ggaattaatg atagttctgt tagaaatggw gctcaggctc tcaagtgtga ggaaccagaa      1560
     gatctattaa actatttggc ttcccagcaa tctaccgtaa ttaaagattc taataaaggg      1620
     ctctccattt acaatagtaa tacttatagg aagagggact ttcgtcaaaa taacaatact      1680
     gccagttatt ctaattcgag caagggcaat gatttcgttt gttttaactg taatgagcga      1740
     ggtcatactt atcacagttg taccaaaccc ctagttaagt gtgaaaaatg tggtagagta      1800
     ggtcataact tggacatttg tacaagaaaa ccgttacagt cccatcttag cggtcagaat      1860
     agtcaagcca cggataaaaa ggttttaaaa gttttaacta acgaacactc cgaccttaca      1920
     sgtgtcaaag gcattgatga attcccaagc cstgttaata agagcattgc taatgactct      1980
     aaccaaaaat tcaataaaag tgtctgcgtg aacggggtta tgttaaaagc atacgtagat      2040
     tttggcagcg actgcagttt gattcagcag tccactgcga taaagcttaa tcttgttcaa      2100
     tgtcgtgaaa atttaccagt cataagaggt tttggtgatt ccactgtaaa accaaaattt      2160
     aaatcgacgg ttaatgttcg aattgatgaa attgagactg acttgattgt tctggccgtt      2220
     gaagattcat atttacaagt agactttttg ataggacaga acttcaccga gctagagtcg      2280
     gtaactgtac tgaaagataa ggatagtttg ttcttttatc atacttctac tgatgaaact      2340
     attaagagag acaatgtttt aaatttgtat gttcttaatg acgtaactat wagaaagggt      2400
     ggtttaatag aaatttacac taaagaacct tattctgggg atatttattc agacggaagc      2460
     accagaatga gccctaatca agagtaccac ctgcatcaag gatgctatag agtcctagat      2520
     agtaaagcgc agatatttgt cactgctttg actaactctg cmttggagtt taaggcgcac      2580
     agtttgattg cccgagtcag ccccgtcaca gaggctaaaa cttgtaccgt ccagatggca      2640
     cttacgmact tggctccact ggataggaat gagattaagg taggagatag cattgacgga      2700
     acaattaaag agagactgta tgagctttta caaaagtacc gtacatgctt tgcgacaaaw      2760
     cttagagagc taggttgtgc caaagacaca atgatgacca tagatttaca agacaccact      2820
     cccgtgattt acagacctta ccgactctca catgatgaac ggcagaaagt aagaaatatt      2880
     atagacgaac taatagaaaa cgatatcgtg caggaatcca actcgaacta tgcaagcccg      2940
     atattagtag taaagaaaaa gaatggggag tcacgactct gtgtagatta tagagctttg      3000
     aacaataaga ccataaagga caagtaccct ttgccgctga ttgacgatca gctttctaat      3060
     ttaagtggta accgtttctt tattactctg gacttagctt cggggtatta tcagatcccg      3120
     atgggagagg agagtcgaca tctgactgcg ttcgtcactc cggatggaca ctacgagttt      3180
     aagcgtatgc cattcggtct ggcgaacgcg ccagctattt ttcagaaaat gatgaatcgt      3240
     ttattgggac caagaaggtt caaatcagca ctagcatata tggacgacct cctcattcca      3300
     tcggtttcaa tagacgaggg tttcgagagg ctggaagacg twcttaagat cattcaggaa      3360
     gctggtttga cactaaaact agagaaatgt agtttttttg atacgactat tgagtatctt      3420
     ggttatgaga tttcggccga tggcattaag cctagtgaga ggaaaattat agcggtgcgc      3480
     gattttccag tgcctcgtaa cgcacatgaa gtgcgtcagt tcttaggcct tgctagttat      3540
     tttcgtaggt ttgtgaaggg attcggggag atagccagac ctttaacgtc actgcttaaa      3600
     aaggatgtac agtggcaatg gtgtgatggg gaggctaaat ctttcactgt tctcaaggaa      3660
     cggctggtac agcgtcctct attggcattg tacaatccat ctcttgatac tgaagtacat      3720
     acggatgcta gcgcattggg gctaggtgga atattaatgc agtggcagac tagccccaag      3780
     gttttgaaac ckgtagcata ctttagcagg cagaccacgc cagaggaacg ctactttcat      3840
     tcatatgaat tggaaactct ggckgtggtc tgctcactga agaagtttcg accctacctt      3900
     ctgggkcttc attttcgcgt cctcacggac tgtaatgcgt tgagaacgac tctgactaaa      3960
     cgagatttaa ttccacgtat tgcccggtgg tggttgacta taagcgagta taactttagt      4020
     attgagtatc gaccgggctg ccggatgagc cacgtcgatg cattgagcag aaaccctcct      4080
     aacaaaagtg ttagcactga agtagatgct cgtactttaa atattaatac tgataattgg      4140
     attttaacct tgcaattagc tgacccaaag ttagaacata tttttaaaat tttaaaaccc      4200
     aacgtcgacc cggacgtcct ggaaattaaa aagaactatg taattaaaaa tcatacattg      4260
     tacagaaaga tcggggaaga gttacgtttg gtagttccca aggatgtaag atggcaaatt      4320
     tgtaaagcca accacgatga cgtaggtcat tttgggtwtg caaaaacact agatctaatt      4380
     caaagtcgtt attggttccc aaaattaaga cgattcataa aaaaatacgt cgccgcatgt      4440
     gtagattgcg cgtacaataa agacaaggca tcccgtactc gcaccggcta cttgcatccc      4500
     attgaaaaag ttgcgcaacc gtttcacaca cttcatttgg accatttggg accatttgta      4560
     aagagtaaac ctggtaattc ttatattctg accatcgtgg acggctttac taagtattta      4620
     ttcgctagag cagtaaaaga cactaaaaca aagactgtag ttaaagtctt agattgctta      4680
     tttaatgatt ttggtgttcc aaatcgaatc atctctgatc gaggaacagc gttcacatcc      4740
     agttcgttta aagacttttg tkgtcaaaaa ggcatcaaac acattctcaa cgctgtkgct      4800
     tgcccgaggg cgaatgggca ggctgagagg tttaaccaaa caattctcac agccttgtcc      4860
     actcaaaact ccggtaatga tgaacgcgat tgggatatgc aactgggtaa agtacagtgg      4920
     ggtataaata ataccgtaaa tgcaactacg aaaaagagcg cttccgaatt gttatttggc      4980
     acaaaactaa acggcccatt agacaacaaa ttaacaactg taaacacaga tgttgagccc      5040
     acagtttcgt ctctaaaagg tgcacgtcaa gactctgtcc ataacgwttc caattgtcat      5100
     tctcctaaat ctcccgaggg tgctgtcgcc agtaacgaac tagcccctaa tttttcagac      5160
     attgataaaa ttagacagga agcatctgtt aatattgaac ttagtcagga acgacaaaag      5220
     tccatatacg attctaagag atccccagca gttatgtack ctataggtga tcttgtaaaa      5280
     attactaaaa ccaattttaa aaatgatggt aaaagtaaaa agcttttacc caagtttata      5340
     ggcccttata gagtaaccaa gtgtttaggt aacgatcggt acgaaatttc taatgtgcca      5400
     gggtttaaga atagtaaata caatagcgtt atcgcttctg atagaatgag accgtggata      5460
     catgtaccgg ctctggaagt cmatagatca tctggttccg aattgtcgtc accttccgac      5520
     tctgacgacg acaaataatt atgtttttat ttcagtataa aataagattt aagtgcttat      5580
     actaawtaga aaatttgttg cgttgatttt ataaactttg tcctaattaa ttkaattgcw      5640
     twataaaatg tattcctgtg taagtaatta ataattgaac taatttataa tgattttgag      5700
     tgttgtgatt ttgcacgcaa cggagtaagc gcgcaaccgg atggccgag                  5749
//
ID   Gypsy-26_TrNi-LTR repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-493
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 183-183 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 493 BP; 173 A; 47 C; 88 G; 172 T; 13 other;
     tgttgtgatt tcctgcatat tgacacctat ttgaatattt atacattttt tttaagaaaa        60
     tgaattaaaa aagatattaa aattacttka catcagattg attactgacg actgagattt       120
     tttatwtttg tacttaatta actaagttkt aaatgactgt tatttcgtta taaaatatta       180
     atgttgattt atctaattat taattaaatg tactttatta tattaggatg taawttattg       240
     aatagtcact aaattgactc gccagagatt atwcagtaaa tggtggcgsg aaaatgaatt       300
     taaaaaaaaa gaaaaggttg ggtggaaaaa ggcgggcaat tgkttcggtg actgctkgac       360
     gtagtagtgk tggagggaga actgagtgag agttttgctg wattattgta tttaagttca       420
     agtttcagtt atcgcaagtc aaakaaataa aaagacatwa accaagctgc gcagtttcat       480
     taaaagtatw ata                                                          493
//
ID   Gypsy-26_TrVa-I repbase;    DNA;    INV; 5059 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5059
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 271-271 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..4778
FT                 /product="Gypsy-26_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQTQFQLLLQEFSKSQTNLIKSLTESLQSRNDDQQQ
FT                 RGINPSFIQPFDEFNPLKENFNLYQQRFENYASIKGIQENKEICAQLLLNS
FT                 IGPTHYKLLTSLVAPDSPTTKTYDQLIKALKDYLYPKTNLLVAQHRFLSLY
FT                 QGDKSIGEYVAALKTNISDCEFNCECRKSVSNLFLRAQFIRGINDSSTREQ
FT                 LLQSDKLSFDDLVSKALVLEVSRTTSREMTASISNTNSSHVNRISRSRQVS
FT                 RHRSRRSSRSNSHRHLSVNSRHSRSKSRDNFKSRHNSRSKGIDYKQLGLEG
FT                 MCIKCGRSNHSTQDCRCKRESLFCKFCSVSGHISKVCIKRLLQDKADPKYG
FT                 AGSTNSIQDFSNYDDSFQNYGINNLFDVFGSSAETATADACKFMATLYIEN
FT                 QPFKFEIDSGAGFTLMPFSMYRKLQLQKPLSKANVTFRSYTNDTFSPHGKI
FT                 TVKVKYKNVESEEEIYIVSDEFAPLVGRIWIRRLGIQLQELDPHNSSKAPA
FT                 NFFSVNRIVHLTEHLSQKFAPIYEKSVGCVPEVTSHLHLRDGAKPMFIPDR
FT                 DVAYALRDKVDEELDSLEASDIIEPVNHSDWGSPLVVIPKADGGVRLCIDY
FT                 KVGVNPQLKSAHYPIKRIDDILNKLKGARYFCKLDLFKAYLHIKVDDASSI
FT                 IQTISTHRGCYRMKRLALGIKTSPSEFNRIFEQILQGLEGVTSYFDDVIIY
FT                 GQTIEETYHRLEQCLARLLKYNLHLNRDKCEFFKTEIRFLGYLIRFNQIVK
FT                 CPEKIKAIQEMARPSDAEGVRQFLGMITYYSRFIRNSSTLTYPLRKLLKKT
FT                 AKFQWTSDCEAAFNRLKEEIASEQVLVPYDPALPVTLACDASPVGVSGILS
FT                 HIIDGQEKPVAFASRSLTTAEQNYSQLDREALAIIYAVSHFYMYLYGRHFQ
FT                 LITDNQPLMRIFHQNSKLPAMSSARLLRYAAYLSGFDYSIKCKKGTENANA
FT                 DCLSRAPLQTSKATMETNINYEINQICCNTIYQIASDTITASTIRQETEKD
FT                 EQLSKTIFEMKTSEKSWDEYTLENGILFKGNRVVIPGKLQPAILQELHSSH
FT                 IGITKMKQLARKYCTWVGIDRAIENLVKSCEQCAMIRSNPAKAPLHIWEEP
FT                 QENWDRIHIDFAGPIDNKHVLIVVDAKSKWIEAPLLNGYPTSESSIKILNP
FT                 IFSSHGFPKIMVSDNAKIFTSDEFQDYCKTNGIFQKFTSPGHPATNGLAER
FT                 NVQTIKNRIKAMNNEPQPLEEKIRKILHIYRATPLSNGKSPAELYLKRNIR
FT                 LRLDAIKPFKEATTQPSIIGVRSLKEGDRIQSRYYAQNKQTWKFGVITRKL
FT                 GALHYIVTLDDGYVLKRHIDQLRKTNVPNKRVSFAPEVKLADDNHTTVSNP
FT                 RSNHRNQLQQDALLAAQASILRHPVTKEQPRTSMQSNTSIQPSTSSQPRIT
FT                 VQPSTSVQLNIPVQQSSQSQSNIQAQPKLINQHNSQATQQPSNLAAEQHFA
FT                 MPVQAATNEKGRTPISKTPAMASRGRGRPVVRKSPNPPTESIRSNRLRKPP
FT                 VRFQDYLLDID"
XX
SQ   Sequence 5059 BP; 1679 A; 1021 C; 928 G; 1431 T; 0 other;
     attggcgacg agtgtgaaaa ttatatgtat aagtgcgtgt ataagtcttt taattaattc        60
     gaatgattct tcaacgttga aactccggat ccatcagcgg caagatcaac gcggtaacgt       120
     gcgggaaatg gtcggtaata agcctatttt atcattatac gggtgttcaa ttctactttt       180
     cgactcatct ctagaaaatg gatcaaaccc aatttcagct tttacttcaa gaattcagca       240
     agagccagac aaacctgatc aaatcactca ctgaatctct ccagtctagg aatgatgatc       300
     agcagcaacg tggtatcaac ccatctttta ttcaaccctt tgacgaattc aatcctttga       360
     aagaaaattt taatctgtac cagcagcgtt tcgaaaatta tgcctcaatc aaaggcattc       420
     aagagaacaa agaaatttgt gctcagctac ttttaaactc tattgggcca acccattaca       480
     aattattaac ctcacttgtt gctcctgaca gtccaacaac taaaacttat gatcagctga       540
     tcaaagcctt gaaagattac ctatatccaa aaactaacct tttagtcgct caacatagat       600
     ttttgtcact ttatcagggc gataagtcta ttggtgaata tgtcgctgcc ttgaaaacta       660
     acatcagtga ctgcgaattc aactgtgaat gcaggaaaag tgtgtccaat ttgtttctgc       720
     gtgctcaatt tattaggggc atcaacgaca gttctactcg agagcaactt ttgcaatctg       780
     acaaactaag ctttgatgat cttgtttcga aggccttagt gcttgaagtt tcacggacca       840
     ccagtcgtga aatgactgca tctatttcta atactaattc tagtcatgtt aatcgtattt       900
     ctcgatctcg tcaagtttcc aggcatcgca gcagaaggag ttccaggtct aattctcatc       960
     gacacttatc agtgaattca cgtcactcaa gatcaaaatc aagagacaac ttcaaatcca      1020
     ggcataatag taggtccaaa ggtatcgatt acaagcaact aggactcgaa ggtatgtgca      1080
     tcaaatgtgg gcgcagcaat cattcaactc aagattgtcg atgcaaacgt gagtcactgt      1140
     tttgtaaatt ttgttctgtt agtgggcata tttctaaagt ctgcattaaa aggctacttc      1200
     aagataaagc agatccaaag tatggtgctg gttcaactaa ttctattcaa gatttttcaa      1260
     attatgacga ttcctttcaa aattatggaa taaataatct ctttgatgtt ttcggatctt      1320
     cggccgaaac tgcaactgca gatgcttgta aatttatggc tactctgtac atagaaaacc      1380
     agccttttaa atttgaaatt gactccggag caggttttac tctcatgcct ttttctatgt      1440
     atcgtaagtt gcaattacaa aaacctcttt cgaaagctaa tgttactttt agatcataca      1500
     caaatgacac attcagccct catggtaaaa ttactgtcaa agttaagtac aaaaatgttg      1560
     agtctgaaga ggaaatttac attgtctcag atgaatttgc acctttagtt ggtagaattt      1620
     ggattcgacg cctaggaatt caacttcaag aacttgaccc acataattcc agcaaagctc      1680
     cagccaactt tttctcagtt aatcgaattg tgcaccttac tgaacatctt tcgcaaaaat      1740
     ttgcacccat ttatgaaaaa tcagtgggat gcgttccaga agttactagt catttacatt      1800
     taagagacgg agcgaaacca atgtttattc cggatagaga tgttgcgtat gcattaagag      1860
     ataaagttga cgaggagtta gattcattgg aggcaagtga tattattgaa cccgtaaacc      1920
     acagtgattg gggatcaccg cttgtagtaa ttccaaaagc agatggaggt gtcaggcttt      1980
     gcattgatta caaggtgggg gtaaatccac aattgaagtc agctcactac ccgataaaac      2040
     gcattgatga catccttaac aaattgaaag gtgccaggta tttctgtaaa ttagatttat      2100
     ttaaagcgta tttacacatc aaagttgatg acgcttcttc aattattcaa acaatttcaa      2160
     cgcatcgagg ctgctatcgc atgaaacgat tagcactagg cattaagacg tcaccaagtg      2220
     aattcaatag gatttttgaa caaatacttc aagggttaga aggtgtaact tcatactttg      2280
     acgatgttat tatctatggt caaactatag aagaaacata tcatcgacta gagcagtgtt      2340
     tggcacgtct tctaaaatac aatctacatt taaaccgaga taaatgtgaa tttttcaaaa      2400
     ctgaaattcg gtttttaggt tatcttattc gattcaatca aattgtcaaa tgtcctgaaa      2460
     agatcaaagc aattcaagaa atggctagac cttctgatgc cgagggggtc aggcaattct      2520
     taggaatgat cacgtattat tcgagattca ttcgtaactc ttcaacgctg acataccctt      2580
     tgcgtaaact tcttaaaaaa acagctaaat tccagtggac ttctgattgt gaagcagcat      2640
     tcaacagact gaaggaagaa attgcctcag aacaagtact tgtcccgtat gatccagccc      2700
     ttcctgtgac tcttgcctgt gacgccagtc ctgtcggagt ctcaggtata ctctcccata      2760
     ttattgatgg tcaagaaaag ccagttgcgt tcgcatcccg ctctcttact acagctgagc      2820
     aaaactatag tcaattggat cgtgaggcac tcgcgataat ttatgcagtg agtcatttct      2880
     acatgtacct gtatggtagg cattttcaac ttataaccga caatcaacct cttatgagaa      2940
     tcttccacca aaattccaaa ttaccagcaa tgtcttcagc tcgtttgctt cggtatgcgg      3000
     cgtatttatc cggattcgac tacagtatca agtgcaaaaa aggcaccgaa aacgccaatg      3060
     ctgactgcct ttccagagca cctcttcaaa ccagcaaagc tacgatggaa acaaacatca      3120
     attatgaaat taatcaaatt tgttgcaaca caatctatca aattgcatcg gatacaatta      3180
     cagcttcgac aattcgtcaa gaaaccgaaa aagacgagca actgtcaaaa actatttttg      3240
     aaatgaaaac cagcgaaaag tcgtgggatg agtataccct tgagaacggg atcttattta      3300
     aaggaaacag agttgtaatt ccaggaaagc tacaaccggc aatacttcag gaacttcata      3360
     gttcgcacat cggcattact aagatgaaac agttggcgcg gaaatattgc acttgggttg      3420
     gtattgatcg agcaatagaa aacctagtaa aatcatgtga acaatgtgcc atgataaggt      3480
     caaatccagc aaaagctcca ttacatattt gggaggagcc gcaagagaac tgggacagaa      3540
     tccatataga ttttgcggga ccgattgaca acaaacatgt actgatcgtt gttgacgcca      3600
     aatctaaatg gatcgaagct ccattgttga atgggtatcc tacgtctgaa agttcaatca      3660
     aaatactgaa tccaattttc agcagtcatg gatttccaaa gataatggtg tctgataatg      3720
     caaaaatttt taccagtgac gagttccaag actactgtaa aacaaatgga atttttcaga      3780
     aatttacatc accaggacat ccggcaacca atggattggc tgaacgcaat gttcaaacaa      3840
     tcaagaatag gattaaagcc atgaacaatg aaccacaacc gttagaagag aaaatccgga      3900
     aaattttgca catttatcgg gcaacacctc tctcaaatgg gaaatctccg gcagaacttt      3960
     acctcaaaag aaacatccga ctcaggcttg atgcaataaa accattcaaa gaagctacaa      4020
     cgcaaccatc tattattgga gttcgatcgc tgaaagaagg cgaccgcatt caatcaaggt      4080
     actacgctca gaataaacaa acatggaaat ttggagttat tacaagaaaa ttaggggcac      4140
     ttcattatat tgtcacctta gatgatggtt atgtgttaaa acggcatatt gatcaactca      4200
     gaaaaactaa tgtcccaaat aagcgtgtgt cttttgctcc agaggtcaaa ctagcagacg      4260
     ataaccatac aactgtatcg aatcctagaa gtaatcatcg gaaccaactt cagcaagacg      4320
     cgttattagc agcgcaagct agtattcttc gacatccagt gactaaagaa caaccaagaa      4380
     cttcaatgca atcgaatact tcaatccaac caagtacctc aagtcaaccg aggattacag      4440
     ttcaaccaag tacatcagtt caactaaata ttccagttca gcaaagcagt caaagtcaat      4500
     caaacatcca agcgcaacca aagttaatta atcagcataa ttctcaagca actcaacaac      4560
     cgtcgaacct tgctgcagag caacattttg caatgccagt ccaagcggca acaaacgaaa      4620
     agggcaggac accaatttcc aaaacccctg caatggctag tcgaggccgg ggtcgtccag      4680
     tagttagaaa aagtccgaat ccacccactg aaagcatcag aagtaacagg cttcggaaac      4740
     caccagtacg gtttcaagat tacctcttgg acattgactg atctctcaat tatatgtaaa      4800
     tcgtcattta gcgaatcaaa cattgtctct agtcagaagt cataattcaa gtataactgt      4860
     gataaacaaa ttgtaagtag tctgtatttt tttttaaaga aaaaaaaaac ttaatgtttt      4920
     tttttttttc taatttctaa atgttcagtt caaaccctgt gtgttcaaat tttgataatt      4980
     catgaagctg acatgaacgt gtctaatttt tttttacatt gtgatatttt aaaataattt      5040
     caattttagg gggggagat                                                   5059
//
ID   Gypsy-26_TrVa-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-26_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-218
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 330-330 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 218 BP; 54 A; 52 C; 43 G; 69 T; 0 other;
     tgtcatgtag tagctaagag cgattcatat ctcccgccac tacagcagaa tgtaggactc        60
     ggggacttgc cgagtcaggt gtgaatcccg gaaagggaac attgttcatt actgaatata       120
     cgcgggctgc tgccctaccg cttctatact tgccgttatc atttcctttt attctagtca       180
     atccttttat tccataagtc catttttaaa tcgtaaca                               218
//
ID   Gypsy-27-I_NVi repbase;    DNA;    INV; 10610 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-27-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10610
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 990-990 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1986..4550
FT                 /product="Gypsy-27-I_NVi_1p"
FT                 /translation="MDNHRKMMDALRKDREVRNLASEIRKYDKEDVEEELK
FT                 SLKISTKGNKAILRDRLLRAEILRAGLSETVPWYEWDNGGVIPTDSEEALT
FT                 AILNHKKSKSRTSSKRDKKEVIAESASQSEIETGKETEYEAGDESLEEIVN
FT                 SSVRQIQALSSLTSTDDGTPGFGCPLTVSNQLQQLISARVLSALQGSSSYA
FT                 TSQKSIDPTSLLFVNKTTRAQPEVVPVSRLASSPTLDSNEGAQKFMGIWPY
FT                 AETIRNSVQPNTGTIKESSTLRRSISDDGKFTRQVQEWELRTPKSKNRPHV
FT                 QPTNLKSALNETEDVERKKPTEPCAINQPRRRKITVQNPGLPWFARGASKK
FT                 PASQPRAKKSSDSSSDSEEDSSSDESEKEESKNRALGKTPTKAIDTKSKQP
FT                 TRESLKKEKSKKKQTKRDSSSSSSDSSDSLSSQENDFDSSSSSDRHEKRKT
FT                 KSCKKKSSRRLEQEERLANHLYQLQIIQGRNIKFAGETRDDPEEYLSQIQE
FT                 CKESLNLKSEEILAMIPHTLSKKASMWFRTEKEGLKTWKTFKKAFEEQFIS
FT                 EVSDNDVIEELRRRTQGKGEKISTYIMNFKYIAAHLKRPMRLKDQLTLLTE
FT                 RLRPEYRRAIRRKKIESYEDVKRYCRTLEEEMERDAMYTPPPTVEKSRFPA
FT                 AAWTPTPKAKVAAAKEVEEAAGVTDANSNKQNINNNNKNKKQKQQQNPPVV
FT                 TSASITDQPVNNNSTSEPKQTNNGPPVWRPVNVQSQRQTQQSQGRADASDA
FT                 TQSQPLSRYNNRGSTPFVGACYHCQQVGHRASACPTVECYACHQKGHKSPV
FT                 CPNRSRSQIQCQVCGQFGTTFQNCGNCATFRTMWGNGNAGASLGPMPPATQ
FT                 Q*"
FT   CDS           4382..8857
FT                 /product="Gypsy-27-I_NVi_2p"
FT                 /translation="IASLPKSQPEPDPVSSLRPIRHYLPKLWKLRYLSNDV
FT                 GKWQRGGIPGADATRNSTITASNVVVKTSSSVTPLSEVVEVLGGGGSGRGP
FT                 LSTEVKEEKEKLLPKANATRWPNNSTETKEEKEKLLPKANATRWPNNSTET
FT                 KEEKEKLLPKANATRWPNISTETKEEKEKLLPKANATRWPDNSTETREEKE
FT                 KSRPNANVTRWPNNRDEVEEENRVAAGEAVLNSSSNEEDSVSRPWRNELQS
FT                 KVHYSQFETQNEWNKPTPLTLDSSSESDGSLLDERVKNNRSQTSANLNASK
FT                 TRGLTLEQGTLYSQECINKVRQRVASREENEKTVVGKECEIEPLKVEKSEK
FT                 RVSFELESEQSDLSDDSDLVEVSGTWEDTPTQVKREKIIELIEEEEDFEKL
FT                 SKIELAVEQLQSTDIAAENQSLPETKEIAEQKKPIPPDPNVDYVSPPIQIS
FT                 DEVEHQAPTAAVITDNRNYMQVVLSGTTYRALFDPGAVITLVGPRVAEKFE
FT                 NRLIAAKTSIQAITGELSPVMGYLQINIELDGIDATITARAVKEIGHDVVF
FT                 GRDFCEIFKIDTDHRGWWRANGGIWRRFNSQNPSENDKVFAECAGITELDE
FT                 DERRQIEEIVDGTLPEYSPDVLGFTDLTEHHISLTCDTPVRQKFRRRSPKK
FT                 IESIQKGAKELERLGIIERSASDFVSQVVMVPKQGTDEERLCVDFTDVNKF
FT                 TKKDGYPLPQMDAILDRLRCARYLSKIDLRQAYFQVKMEESSKKYTAFAVP
FT                 GYGLWQFTRMPFGLINAPMTLQRLVDTLFGPEDTPQIFGYLDDIVIATDSF
FT                 EEHKIKVRYVLQKLISAGLTINPKKCQFCVSQIKYLGFVLDKDGLRTDPDK
FT                 VAPVLNCPAPCNVRELRRVLGMIGWYARFIENSSETKIPLVKLLRKDQKWT
FT                 WGDEQQQAFEKLKKALTVAPVLARPDFNKPFCIQCDASNVAIGAVLTQEFD
FT                 DGEHPIVYVSRVLTAAEKNYTTTERECLALVWAIKKLRPYVEGYHFTVITD
FT                 HSALRWLRSLKEPSGRLARWALEVQQWDFDIIHRRGANHRVPDALSRMLEP
FT                 ELAAVAEISDPWYLRRFKEVEEFPNKFPQWRVEDGRLYRFKRDPLLDPITH
FT                 SDEAWKLVIPAEQREKVMTVAHVEVTAGHMGIEKTYDRIAREYFWPGMYHD
FT                 VHSFITACPVCQRYKVSQQGPQGLIGKRIVEKPWTVVAADMMEFPRSKGQN
FT                 KYLLVFQDLFTRWVEVKPLRKADGKSVARAFEELVLFRWETPEYLLTDNGT
FT                 EFLNKHVAETLKEYGVTHVTTPPYHPQANPVERSNRTLKTMIAMFAESHRD
FT                 WDKHVHELRHAMNTAVQSTLKTSPAFLNFGRHPSPVKSLRTEIEGRGPKLQ
FT                 LDPAVWQDRMKRLDALRELVAKFIDNARNKQGETYNRRRRLTNFAVGDMVL
FT                 RRTHYQSKAAESFSAKLAPKFEGPFRITEQKSPTVYILEAEEGNSRKIAKA
FT                 HVSDLKRYLPPRNPKTNSPNTDPTSR*"
FT   CDS           8981..10351
FT                 /product="Gypsy-27-I_NVi_3p"
FT                 /translation="MLQIRNSVMPRRTRSRSLLTESRHVAEEEFVPPTFTA
FT                 VPPDFVPPQWSTRHERIRDPNGPKSEETMHRELRVRDAIRRREMEEEEERE
FT                 RELLAGSDDEARTVEPMEVAAFTLVPAETNTKVGGGRNPSSKVSPWFRLES
FT                 AEERESREAVEELRRVVEKETGVDLPTQVEERTLDTRGLPQRPFTTRDARE
FT                 GTTTPKKDPVCSTPEDTVRERKRGLQLKVKLSGLRYSGLKPIPTDPELDPP
FT                 PYSCFNCWGRGHTVFNCPEPRHGKICLNCGRFGEDLNSCPRCRDRHAEYLA
FT                 TVGSHKGVTTRTSSPKPGTSRDEAPRPTTPLSPEGATATSRTASISRHRRE
FT                 RSITWATPLAKESPKPSPPRSPKSCSAGRPRIRRGDPYATTEPTTTSSSST
FT                 SSRSGSPPREESPTRGVAEAVAETLRLIDEVRDLPQDIRDSILRRTFCQPK
FT                 PRRSRSRSRKD*"
XX
SQ   Sequence 10610 BP; 3382 A; 2325 C; 2558 G; 2345 T; 0 other;
     gtggctgccc aatgtgtggg gcacggtcgt ggaaaataat ttacgagtga tagtgttcag        60
     tgcgcgacat tttgaaacgt ggcaccaatt tcgttcaaag ttaatcgtga gccgtgtcta       120
     actaaaatca agtgtataaa taattccaat gaagcagaga gttgtatgat actgccggaa       180
     aaatttaaat tttattcgtg taaccgccag agaaaaattt actcgccacg tgctgacagc       240
     cgccgtgatc gcaaaaactg gggttctcaa atgtaaaatc atggtttacc tcagtgctct       300
     ttttcgatta tagcctaaca aaagacgagt ttgtgcattg ctctaacagt cggttgagtg       360
     tgcaaatttt tcccaacacg cagtagtgga aattctgccg aaaaccactc gccacgtgtc       420
     gatagtcgct gggagtgtaa aaactggggt tctcacaagt gaaatcatgg tttacagaat       480
     tacgcccttt taaactttac agtggcaata tacgggttta ttaatatttt tacggccaat       540
     tgtgagtgca gaatattttc agatttaata cgaagccgaa ttaaattttt tttttttgcc       600
     ttcttgcaaa attcaagttg tagtagttga gagaaaatta acgtttgacg gacccgtttt       660
     aaaatttttt tttcttttgc ctcgtttaga attataaagg gattcgaaac gaagaaaata       720
     aatttttttt tgtcgtgaaa atttacagcc gtaattttcc gaagaataat tggagttata       780
     gaatttttaa aataccgagc agtagttgaa gacgtcgaga gttgaaaaat aatttttttt       840
     ttttttcccc tttgttgatg tgtttgttga gagagtagaa gccgataaga atagtgaaga       900
     aaattttctt ttgcctatag tcgcttgata attgcttaaa acaatcattt tagccgaaca       960
     aaattttttt ttgggaattc aatgtcggga aaaattttgt gatagcctgt ttgacttgat      1020
     tggaaagttt taaactaaga ttcaattcta gccatactgc cgactatcct taaccccgaa      1080
     cgagttaata aacaaatttt gtggcccgat tgcgagttga atcaagcact agcaatgaaa      1140
     gaaaattaat ttacccactt tactatttaa ttacaattga cgcaactcat gccgattgcg      1200
     catgaataat tataagtatc aattgaggta atatttcaat atctataaaa tatatacaca      1260
     taatctattt ataatttata aacatatata tgtatattga tatttttgta cgcattccca      1320
     ttgtaaaaat tttaacattg aaatccgatc ccgctggctt cgtataacct ttctgcctgg      1380
     atgaaagttt ttttttttgg ccccaaataa atcacttgtt ttagccggtt aacagtagaa      1440
     cggctaaatc agttgatgaa tattacaccc ataagctagc agtcgaataa cccatttggt      1500
     ttatcagtaa gacggtcaat cgttactggt ttctttttcg gtctaaccct agtaactatt      1560
     tctttccttt ttttttgccc agattctaga ttcgcaaaat acgttgtact aatcgaaatt      1620
     tttgaagtcg ggttgaattc gttttccagt gagtgaatga gagatagacc ctgggtgggc      1680
     ccttcgacct ttacagcggt ttagctgaga aatatattga attttttttt gcttttcccc      1740
     gattattcga acccaatcac caccgtgtaa agtattgcgt agagaagaaa accagtcgtt      1800
     taaccggtta ttatctgcca agaattttat ttttgagaag ttcaagaagt atttacagcc      1860
     tatcttatca agaaataaaa gaagaatata gagagaaaat tacagtcaga ccaccaagaa      1920
     gtttagaaaa ttgtatacgc ttttccatca accaaggctt aaagggtaaa tagcagaaag      1980
     taaccatgga taatcacaga aagatgatgg acgcactgcg taaagatcga gaagttcgta      2040
     acttggccag cgagattaga aagtatgata aagaagacgt agaagaagaa ctcaagtcgt      2100
     tgaaaattag tacgaaggga aataaggcga ttctaagaga tcgcttgtta agagccgaaa      2160
     ttttacgagc cggtttgagc gagacagtgc cgtggtatga atgggacaat ggtggcgtta      2220
     tcccaactga ctccgaggag gcgctgacgg cgatcctcaa ccacaagaaa agtaaatcca      2280
     gaacgagtag taaacgagat aaaaaagaag tgatcgccga gtctgcctca caatcagaaa      2340
     ttgagactgg caaggaaacc gagtatgaag ccggtgatga aagcctcgaa gaaattgtta      2400
     actcttcagt gagacaaata caagctctgt cgagcctcac ttccacagac gatggaacgc      2460
     ccggttttgg atgcccgtta acagtatcaa atcagctcca acaactcatt tctgcacgag      2520
     tactcagcgc ccttcaggga tcatcgagtt atgctaccag ccagaagtcg atagatccca      2580
     catctctact attcgtcaat aaaaccacta gagcccagcc agaagtcgtg ccagtgtccc      2640
     gtcttgcctc cagcccaaca ctcgactcta acgagggagc tcaaaaattt atggggattt      2700
     ggccttatgc agaaaccatt aggaactccg ttcagcccaa tacgggaaca attaaggaaa      2760
     gtagcacgct gagaagatcg atatcagacg atgggaaatt cacgagacaa gtacaagagt      2820
     gggaattaag aacgccgaag tcgaaaaaca gacctcacgt tcaaccgacc aacttaaagt      2880
     cagcgctcaa cgaaactgag gatgtagaaa ggaagaagcc gacagaaccg tgtgccatta      2940
     atcagcctag aagaagaaaa atcacagtgc aaaaccctgg gttgccctgg ttcgccagag      3000
     gagcttctaa gaagccggca tcacagccga gagccaagaa atcatctgat agtagtagtg      3060
     atagcgaaga agatagtagc agtgacgaat cggaaaaaga agagtcgaag aacagagccc      3120
     taggtaagac tcctacaaag gccatagaca ccaagagcaa acaaccaact cgagagagtc      3180
     tgaagaaaga gaagtccaag aagaaacaga ccaaaagaga cagctcgagt agtagctccg      3240
     acagcagtga cagccttagc agccaagaga acgacttcga tagctcctca agttctgacc      3300
     gccacgaaaa acggaaaaca aaaagctgca agaagaaatc gtcccgacga ttagaacagg      3360
     aagagagatt ggccaatcac ttgtatcaac tccaaattat acaggggcgg aacatcaagt      3420
     ttgctggtga gactagagac gacccagaag aatatttatc tcagatacaa gagtgcaagg      3480
     agagtctaaa tcttaaaagc gaagagattt tggccatgat tccccatact ctatcaaaga      3540
     aggctagcat gtggttcaga acagaaaaag aaggacttaa aacctggaag acctttaaga      3600
     aggcattcga agaacaattc atcagcgagg tgagcgacaa tgacgtaata gaagaactac      3660
     gtagacgaac gcagggtaaa ggggagaaga tatctacgta tattatgaat ttcaaatata      3720
     tagcagccca tctaaagaga ccgatgagat taaaagacca gctgacatta ttgacagaga      3780
     ggttacggcc ggagtatcgt agagcgatta gaaggaaaaa gatagaatcc tacgaagatg      3840
     ttaagaggta ctgccgaaca ctagaagagg agatggaaag agatgcgatg tatacaccac      3900
     cacccactgt tgaaaaaagc cgattcccag ccgcagcttg gacgccaaca ccgaaagcca      3960
     aagtagcagc cgccaaagaa gttgaggaag cagcaggagt taccgacgcg aattcaaaca      4020
     aacaaaatat taacaacaac aataaaaata agaaacagaa gcaacaacag aacccgccag      4080
     tagtaacttc agcctcgatc acagatcaac cagtgaataa caactcaact agcgagccca      4140
     agcagactaa caatggccca ccagtgtgga gaccagttaa cgttcaatcg caaaggcaga      4200
     cccaacagtc gcaaggcaga gctgacgcca gtgatgctac ccagagtcaa ccactaagcc      4260
     ggtacaataa cagaggttct acaccatttg tcggagcatg ctatcactgt caacaagtgg      4320
     gccacagagc atcagcctgc ccgactgtag aatgttacgc ctgccatcag aaaggccata      4380
     aatcgccagt ttgcccaaat cgcagccgga gccagatcca gtgtcaagtt tgcggccaat      4440
     tcggcactac cttccaaaat tgtggaaact gcgctacctt tcgaacgatg tggggaaatg      4500
     gcaacgcggg ggcatccctg gggccgatgc cacccgcaac tcaacaataa cggcctcaaa      4560
     cgttgtggtg aaaacttcta gctctgtaac tccgttgtca gaggtagttg aagttttggg      4620
     agggggaggt agtggccgag gaccactaag tacagaggtg aaagaagaga aagagaaatt      4680
     gctgccaaaa gctaacgcaa cccgttggcc aaataacagc acagagacga aagaagagaa      4740
     agagaaattg ctgccaaaag ctaacgcaac ccgttggcca aataacagca cagagacgaa      4800
     agaagagaaa gagaaattgc tgccaaaagc taacgcaacc cgttggccaa atatcagcac      4860
     agagacgaaa gaagagaaag agaaattgct gccaaaagct aacgcaaccc gttggccaga      4920
     taacagcaca gagacgagag aagagaaaga gaagtcacgg ccaaatgcta acgtaacccg      4980
     ttggccaaat aaccgagacg aagtagagga agagaacaga gtagcagccg gcgaagcagt      5040
     tctaaactcc tcgagcaacg aagaggacag tgtatcccgc ccgtggagaa acgagctcca      5100
     gagcaaagta cattacagcc aattcgaaac tcaaaacgag tggaataaac ctacgccgct      5160
     gacactggac tcaagtagtg aatcagatgg gtcgttattg gatgagagag tgaaaaataa      5220
     tagaagccaa acctctgcaa acttgaacgc atcgaagact agaggcctaa ccctagaaca      5280
     gggcaccctt tactcccaag aatgcattaa taaagtcaga cagagagttg ccagtagaga      5340
     agagaacgag aagacagtag ttggaaagga gtgtgaaatt gagccgttaa aagtagagaa      5400
     gtcggagaag agagtctctt tcgagttaga atcggaacag tcggatctat cagatgactc      5460
     agaccttgtg gaggtttcgg gaacctggga agatacgcca actcaagtca aaagagagaa      5520
     gattatcgag ttgatagaag aagaagaaga ttttgaaaag ttgagtaaga ttgaattggc      5580
     tgtcgagcaa ctacagtcga cagatatagc agccgaaaac caatcactac cagagactaa      5640
     ggaaattgct gaacagaaga agccaatacc gccagacccc aacgtcgact acgtaagccc      5700
     acccatccaa atctcagacg aagtagagca tcaagctcct acggcagctg tgataaccga      5760
     taatcggaac tacatgcaag tagtcttgag cggaacaacc tatcgggcac ttttcgatcc      5820
     tggcgccgta atcaccttag taggccccag agtagccgag aaatttgaaa accgactgat      5880
     agccgctaaa acttctattc aggcgattac gggcgaacta tcacccgtaa tgggatattt      5940
     acagatcaat attgaattgg acggcattga tgcaaccatt acagcccgcg cagttaaaga      6000
     gattgggcac gacgtggtat tcggtagaga tttctgtgaa atctttaaaa tagatacgga      6060
     tcacaggggt tggtggagag caaacggtgg aatatggcga agatttaata gccaaaaccc      6120
     gtctgaaaat gataaagttt tcgccgaatg tgccggaata acagaattag atgaagacga      6180
     aagaagacag atagaagaga tagtcgacgg aaccctgccc gaatactcgc cggatgtatt      6240
     aggtttcact gatctcaccg aacatcacat cagcctaacg tgtgatacgc cagtgagaca      6300
     gaaattccgc cggagatcac ccaaaaagat agagtcgatt cagaaaggag ccaaagagtt      6360
     agagagacta ggtatcatag agagatcagc cagtgatttt gttagccaag tagtgatggt      6420
     gccgaaacaa ggcacggacg aagagagact gtgtgtagac tttacagacg tgaataaatt      6480
     tactaaaaag gatgggtatc cgttaccgca aatggacgca attcttgaca gactgaggtg      6540
     tgccagatat ctgagtaaaa ttgacctacg tcaagcctat ttccaagtca agatggagga      6600
     aagtagtaag aaatataccg cctttgccgt accaggatat ggattgtggc aattcactag      6660
     gatgccgttt ggcctgatta atgcccccat gactctacaa cgtctagtgg acaccttatt      6720
     cggccccgaa gatactcctc aaatttttgg ttatttagat gacatagtga ttgccacaga      6780
     ctcttttgaa gagcataaaa taaaagttag gtatgtacta cagaaactga tttcagccgg      6840
     actaactatc aaccccaaga aatgccaatt ttgtgtgagt cagatcaaat acctaggttt      6900
     cgttctagat aaagacgggc ttaggactga ccccgacaaa gtcgcgccgg tattgaattg      6960
     tccagcaccg tgtaatgtca gagaattaag aagagtattg ggaatgatag gttggtatgc      7020
     cagattcatt gaaaacagtt cggaaactaa aatcccacta gttaaacttc tacgcaaaga      7080
     ccaaaaatgg acttggggag acgagcagca acaggcgttc gaaaaactca agaaagcctt      7140
     aaccgtagcg ccagtactcg ccagacccga tttcaacaag cctttctgta tccaatgtga      7200
     cgccagcaac gtcgccatag gagctgtgtt aactcaggag tttgacgacg gagaacaccc      7260
     gattgtgtat gtcagccgag tcctaacagc cgccgagaag aactacacta ctacagagag      7320
     agagtgtcta gctttagtat gggccataaa gaagttacgg ccatatgtcg aaggatacca      7380
     tttcacagtg atcacagatc acagtgcact acgctggctt cgctcgttaa aggagcccag      7440
     tggaaggcta gctagatggg cacttgaagt tcagcaatgg gacttcgaca ttattcaccg      7500
     tagaggcgcg aaccatagag tgccagacgc cttgtcgaga atgcttgagc cagaattagc      7560
     agccgtggcg gagatctctg atccttggta tctccgacga tttaaagagg tagaagagtt      7620
     tcctaataaa tttccccagt ggagagtaga agatggtcgg ctataccgat ttaagagaga      7680
     tccgttgttg gaccctatta cccatagcga cgaagcctgg aaattagtca taccagccga      7740
     acagagagag aaagtcatga ctgttgccca cgtggaagtt accgccggac acatggggat      7800
     cgaaaagacc tacgatagaa tagcgagaga atatttttgg ccgggaatgt accacgacgt      7860
     ccactccttt atcaccgcct gcccagtctg ccaaagatac aaagtgtcgc aacaaggccc      7920
     acaaggcctt atcggcaaaa gaatcgtaga aaagccttgg accgtggtag ccgccgatat      7980
     gatggaattc ccaagaagta aaggccagaa taaatactta ctagttttcc aagacctgtt      8040
     tacccgctgg gtggaagtca agccattgcg taaagcagac ggaaaatcag tcgccagagc      8100
     ttttgaagaa ctagtgttat ttcgctggga gacgccagag tatttgttga ccgataacgg      8160
     aacggaattc ttgaacaagc acgttgccga gacgttaaag gaatacggtg tgacacacgt      8220
     tactacacca ccataccacc ctcaagccaa tcctgtcgag aggagtaatc gcaccctcaa      8280
     aacaatgata gcgatgttcg ccgagagtca cagagattgg gataaacatg tccacgagct      8340
     tcgtcacgcc atgaataccg ccgtacaatc aacgctcaaa acatccccag cctttttgaa      8400
     ttttggcagg cacccctcac cagtcaagag tctacgtacg gaaatcgagg gtcgaggtcc      8460
     aaaattacaa ttagatcctg ccgtgtggca agatcgtatg aaacgactgg atgcgttacg      8520
     agagctcgtc gccaagttta tagataatgc gagaaataag cagggggaga catataatag      8580
     aaggcgtaga ttgaccaatt ttgcagtcgg ggatatggtt ttgaggagaa ctcactatca      8640
     gtcgaaagcc gctgagagtt tctctgccaa gttagcaccc aaatttgagg gaccctttcg      8700
     aattacagag cagaaatccc ctaccgtgta tatcttggaa gccgaggagg gtaacagtcg      8760
     gaaaatcgct aaagcacacg tatcggacct gaaaagatac ttaccgccgc gaaatcctaa      8820
     aactaacagc cctaacaccg atcccacgag ccggtagtga actgcagccc gtggaaggac      8880
     gtacctggcg tatagacatt atatgtggtt tgtattggtg gtggagtaga aaactgtgtt      8940
     gtccctatga tgagtgtgga attcgcattt aattacagta atgttacaga taaggaactc      9000
     cgtgatgcca cgccgaactc gctccagaag cctcctgacg gagtcacgac atgttgccga      9060
     ggaggagttc gtgccaccga cgtttactgc cgtgccgcca gattttgtgc ccccgcagtg      9120
     gtccacgaga cacgagcgta ttcgtgaccc taacggcccg aagagcgagg agacgatgca      9180
     ccgcgagctc agggtccggg acgctattcg tcgccgagag atggaagagg aagaggagag      9240
     agagagagag ttgttagccg gatcggacga cgaggcgaga acagtcgagc cgatggaggt      9300
     ggccgccttc actctggtac cggccgagac caacaccaag gtgggtgggg ggaggaaccc      9360
     gagctccaaa gtctcgcctt ggtttcgcct ggagagcgcc gaggaacggg agagcagaga      9420
     ggccgtggag gagttgcgcc gcgtcgtgga gaaggaaacg ggtgtagacc tccctaccca      9480
     ggtcgaagag cgtactctcg acacgagagg cctaccccaa cggcccttca ccacgcgcga      9540
     tgctcgcgag ggcaccacga ccccaaaaaa ggaccccgtg tgctctactc ccgaagatac      9600
     ggtaagggag aggaagagag gactccagtt gaaggtgaag ctgtcaggcc tccggtacag      9660
     cgggctgaag cccattccaa cggaccctga actggatcca cccccataca gttgtttcaa      9720
     ctgttggggg aggggccaca cagtcttcaa ctgcccagaa ccgagacacg gcaaaatctg      9780
     cctaaattgt ggtagatttg gagaggacct caactcgtgc ccgcgctgtc gggaccgcca      9840
     cgctgagtat ttggcgacgg taggctctca caagggtgta acgaccagga cgtcaagccc      9900
     taaacccgga acgagtcgag atgaggcacc tcgccccaca acacctctgt cacccgaagg      9960
     agcgacagcc acctcccgca cggcgtccat ctcccgtcac cgccgagaga ggtccatcac     10020
     ctgggccacc ccgctcgcca aggagtctcc caagccctca ccgcctcgta gtcccaaaag     10080
     ctgctcggct gggcgtccgc gaattcggag gggggatcct tatgcgacaa ccgagcccac     10140
     taccacctcc agttcttcta cctcgtccag gagtggatca ccgcctagag aggagtctcc     10200
     cacccgtgga gtagctgagg ctgtagccga gacgttacgc ctcattgatg aggtccgaga     10260
     tctgccccag gacatcaggg actcgatctt gaggcgaact ttctgccagc cgaaaccccg     10320
     acgatccagg agtaggtcca ggaaggactg agttcgctct cacagccaaa ctacagccag     10380
     ttacagccag tagagtgagt ttcctaatct agaccgggtt tatcggccca aaattttgtt     10440
     gacctttttt tttattattc attgtataaa ctaatcatgc aatccttaca gccctgcagt     10500
     ctcgagatag tagttgtgag aagaagagag agagagagtg acatttttct tccttcttag     10560
     gtaaagaaaa actgaaacat tcagagtatg tttagttttg ggagggggaa                10610
//
ID   Gypsy-27-LTR_NVi repbase;    DNA;    INV; 1201 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1201
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 991-991 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1201 BP; 343 A; 251 C; 305 G; 302 T; 0 other;
     tgcgacgggg tgaccgtcta gtattaagaa gttctctctc tctcttttct acgtcaccct        60
     atcagaactg catcaccatg agttaactct catagatctg gtatgcattc taggtagagg       120
     aaggtcggaa tcggccacat agccgtgcaa tagcagccgg gagaaggaga gagagaatag       180
     ccgactaaca gccgagttag ccgcttactg tagagcgctc ccaccagccg cgcgactaca       240
     cgcacacgct ggagctcacg cacgctcaca cctaagccgc tcgagtcaga agataagccc       300
     gccgccggga gggggaaaac ctcgcgccag gccgcggcag cagatactat actgctactt       360
     gtatgtgtga ggcgttgagt gtgtgtaaaa agaatattca cctatgtaac ctaaagaatt       420
     atttatttgt aatgtatgac atgagaggtg gtatgataca gtgtgaaaac ccaacgatcg       480
     cacgagaaaa catatgtaaa tcgccaaatg taacggcact agaccgataa ctatgtattg       540
     cgcttgtgtg agtactctag ggaggtgtac cgtcgcgcct cggccagaga attcgcccac       600
     ttgagttttc gtcgcagtcc agagaacatc cctacggttg accagacatt tgttaattta       660
     gagtagagta aaatataaga gtgcgttatt ttgtcgttat tgttataaga acgagggaga       720
     ggtacgagag agaacttcag ccggaaggta gtgtttaatg gtaatattta tgatatatat       780
     tgagtgtgag aggaataagc cggacgttgc gaaagtcgga gcgttactgc ctcgtggcag       840
     catttttgac gagccgagat ttgtagtacc ggataactgt gtgagcgttg tgtgcgaaaa       900
     cggaaattgt agctagtaga aaatatcacc ttagagcctc gcgtttatta tattacagcc       960
     ggttttgttt aagtaaaaat ttgtgaagtg ataatcagtc gagtggtcta agcttattat      1020
     ttcctatttt tccgatcgaa ctccctcgga gaatagagtc tcgtaactag ccggagacgc      1080
     gaccccaaaa cgttcgcaga taaatcgtcc gacctggcgc cttcgaaata aatacggccg      1140
     ggcgttagta gctaatcatt gttgcaaagg aaaataacga gagaaaatct acctcgttac      1200
     a                                                                      1201
//
ID   Gypsy-270_AA-I repbase;    DNA;    INV; 5250 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-270_AA_;
KW   Gypsy-270_AA-LTR; Gypsy-270_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5250
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2642-2642 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2565-3098] - Reverse transcriptase
CC   Positions [4184-4645] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1404..3329
FT                 /product="Gypsy-270_AA-I_2p"
FT                 /translation="MVTELNDAGINEQRADKYASIILSLDRYYAPKTNKRY
FT                 ERHLLRGIKQEETESFDNFVNRIREQANRCEFNDVNDATIDQIIEGCLSQD
FT                 FRKKLLSEEKTFEEILQLGKAMEDLQAQCKTYVKEVQSVQHELVQRVQPSK
FT                 SAVRCFKCNRLGHIARDKNKCPASGVKCHVCGELDHFKICCPKKRKWEGNE
FT                 NLVPAKKYKPAYKKGLYCVNAGEKSETLAFEVGGVKVQMLVDSGSPPNIIT
FT                 QKTYGKLKQAGAEIINEREALEESKQYQGYGSSEPIYFSKAFETEIKIPGD
FT                 ENGVWSYVLVSPNGQTNLLSKSTAFALGVLKIGYDVRNEVNTISEPKTSSP
FT                 FPKVPGIQLKIHVDSSITPVCQPIRRLPIAMEAEVEHQIQELLNQQIIEKV
FT                 EHPTSWVSPLVPVRKNDAKLRLCVDLRAANKAVLTENYPMPNIEEALSSIH
FT                 KAEMLSTLDLESAFYHLELDAESRDITTFVSRSGLYRFTRLVFGIKSAPEL
FT                 FQKTISNLIGGIKGVIIYLDDILIFADSVEEHDRILALVIERLKTYNLKVN
FT                 EKKSVLRASSVEFLGFQISKYGVSLTETKIKAFLDMRAPQTTSELRSLLGT
FT                 VQFFGKFIGNLSKRTHNMRQLLHKGTPFSWKTDHRKELDDLKKS"
FT   CDS           4142..5146
FT                 /product="Gypsy-270_AA-I_1p"
FT                 /translation="MMAKPDPPCPMARRLPTLPWQDVAMDFIEGLPNDYSL
FT                 LVVVCYTTRYTMVEPMKHPTSSMVVMALLKMFSKFGIPQSITTDNGPQFRA
FT                 IELRKFCESYNIHLNLTTPYWPERNGAVERQNRNLKKRIKISVAQDTDWKR
FT                 DLYEYLLFYHSTPQETTGLSPAKMMFNRELISYLPTIQEPTRIFFEGTQER
FT                 DALIKEHKKQYANDNRHARENNIIAGDTVLMRNLKLGSTQPNFRPEEFEVI
FT                 NVNGSELEVRSKETGKEYTRNRTHLKKLPLQRSSDADVQPSSTEVLNDDSQ
FT                 PGCNETNYERAQTSCKEIQTEDIVRPRRNRNAPGKYKDFHLYQ"
XX
SQ   Sequence 5250 BP; 1695 A; 1001 C; 1156 G; 1394 T; 4 other;
     acggcgacga gtttaaaaat tggtgagtaa aagtgaaaga aaagccgaat cgtccggaaa        60
     gtgttgaata attattcaat tgtgaaaata gcagccagca actatgtggt ttttcaaaat       120
     ttccaccgga gtggtggaaa tttattggga aggaagaaaa attagatttg agaccacaaa       180
     aaaaggggcc ccaaagacgc cgcgggcata gcaccattca tgaactaccg aaatggtttt       240
     tttggggtta tgtttgatct gaagctgtta atggcgggag tgagttacaa atgtgttggt       300
     ggcatgatcg agtgattcaa cataggtttt ccgttcaggt ttttttttct tttcgttcgt       360
     gtcaagtgta ttcgtttgtt tgatcgtgga tgaaattaaa gccgtccttt aaagcggctt       420
     ggtgatattt gtaaacataa ccagcncccc agcacccatg acacgtcatt gtcatgttat       480
     gttcccgaaa aattaggcta gctaaatata ttatgacgtc ttttgttttt atttttgttt       540
     tttttatgag ttcttactta tagtacgaat tagtgagtgc ataaatacaa tatccaataa       600
     acctacgttg cacaaagagt aataaacatg tctcatgaaa aataagctgt aaggaatagg       660
     gtaacggacg aattttggac cctttaagaa aatgattttc agttttgttc caattaattt       720
     attggacaga aatgaagtca atgaacatgt cgaaatgtac agaaaaattt tctcaataaa       780
     aaaaaatgct catacgatca tgtatagttc aaagcacatt ggaaataata tgaagcattg       840
     cttttcatta ctttggacac tgcaaattcc attggttgcc ataacaggtt ggggtctgtt       900
     tacggggtat ttgaattgtg ttttatcttt cggtaaatat gtatgaaatg cgggtagcgc       960
     atgttgtggc attgtgtatt tagttgaaaa tgtgaatcnc gaaaatgcag cagctagaaa      1020
     gtgtgggtag cacacatagc atgtgggtag catatgcaga agtaaaagcc agctattgtg      1080
     tgggcagcac acctgcatat gggtagcata tgcagaactg taatgcaatt agcattaatt      1140
     ttggtgaact tttacctaat gaataatcat cgcaatgatc taagatagtt tgtatttgaa      1200
     tatttcgttt agatgcatca gtggttccac cgttcaaacc gggacgcgac gctcgtagcg      1260
     attggctcaa atggaagcga gctctcgagc ggtatttgaa actaagtaag ataactgagg      1320
     aagaagagaa gtgtgatctt ttgttggtac tcggaggcat tgaactgcaa gaccagtatg      1380
     agaaaattgt ccattatgaa gttatggtca cggagttgaa tgacgcaggc atcaatgaac      1440
     aacgagccga taagtatgcg tcgattatac tttcgcttga cagatactat gcgcctaaga      1500
     caaacaaacg atacgaacgg catctgttac gcggtatcaa acaagaagaa actgaatcgt      1560
     ttgacaattt tgttaatcga attcgagaac aagctaatag gtgtgagttt aacgacgtta      1620
     atgatgccac aattgatcaa ataatcgaag gctgtctgtc ccaggatttc cgcaagaaat      1680
     tgttgtctga ggagaaaact tttgaggaaa tattacagct cggaaaagcg atggaagact      1740
     tacaagctca gtgtaaaaca tatgtaaaag aagttcagtc ggttcaacac gagcttgtac      1800
     agcgagtaca acctagtaaa tcagctgtga gatgtttcaa atgtaatcgc ttaggccata      1860
     tcgcgcgtga caaaaacaaa tgtccagcat ctggcgtaaa atgtcacgtt tgcggggaac      1920
     tcgaccattt caaaatatgc tgtccgaaaa aacgtaaatg ggaaggaaat gaaaatctgg      1980
     taccagcaaa gaaatacaaa ccagcataca agaaaggttt atactgcgtc aatgctggag      2040
     agaaaagcga aaccttagct tttgaagtgg gaggcgtgaa ggtacagatg ctggttgatt      2100
     ccggctcgcc accaaatatc atcacgcaga aaacttacgg aaaacttaaa caagcaggtg      2160
     cagagattat caacgagcgt gaagccttgg aggaaagcaa gcaataccaa ggatatggat      2220
     cgtcagaacc tatttatttc agcaaggctt tcgaaactga aataaaaata ccaggagatg      2280
     aaaacggcgt ttggagttac gttcttgttt cacctaacgg gcaaaccaat ctgctatcca      2340
     aatcgaccgc ttttgctctt ggtgtgttga aaattggtta cgacgttcgt aatgaagtaa      2400
     acacaatttc tgaaccgaaa acatcatcgc ctttcccgaa agtgcccggt attcagttga      2460
     aaatacatgt cgattcctct atcacgccgg tatgtcagcc aatccgtcgt ctacctattg      2520
     ctatggaagc agaagtagaa catcagatac aagaactttt gaaccaacag ataatagaga      2580
     aagtggaaca tccaactagc tgggtttctc cgttagttcc tgttcggaaa aacgacgcaa      2640
     agcttcgcct ctgtgtcgat cttcgagcag caaataaggc agtattaact gaaaactacc      2700
     cgatgcccaa catagaggaa gctttatcgt ccatccacaa agcggaaatg ctgtcaacac      2760
     ttgatctgga gtccgcattt taccatcttg agcttgatgc agaaagccgc gatataacaa      2820
     ctttcgtttc acgaagcggg ctatataggt tcacacgact cgtttttgga ataaaaagtg      2880
     ctcccgaatt attccaaaag acaatcagca atcttatcgg tggaatcaaa ggtgttataa      2940
     tatatctgga tgatatatta atattcgccg attcagtaga agaacatgat cgtattttgg      3000
     cgttagtcat tgaacgtttg aagacctaca atctgaaagt caacgagaag aagtcagttt      3060
     tgagagcatc aagcgttgaa tttctcggtt tccaaatctc aaaatatggt gtgagcctga      3120
     ctgaaaccaa aattaaagca ttcttggata tgcgtgctcc acaaacaact agtgagctnc      3180
     gatcacttct gggtactgta cagttctttg gaaagtttat tggaaacctt tctaagcgta      3240
     cccataatat gagacaactc ctgcataaag gaactccgtt ttcctggaaa acggaccacc      3300
     gaaaggaact tgatgatttg aaaaagtcaa tnggctgatc aaaggacgct taagtattac      3360
     gatccacgtg ataaaacgta tttgataacc gacgctggcc ctaatggcct tggtgccgtt      3420
     ttggcccaag aagagaataa tgaaatccga ccggtcatgt gtatctctcg aagtttgacc      3480
     ccttgcgaaa tcaaatactg tcaaaccgag aaagagtgtc tcggaattat atgggcaatg      3540
     gaaaaattgt acatatatct ctacggaacg cgtttcaccc tcatcacgga ttgtaaaccg      3600
     ctagtctact tgcttgaccg tgtgcgatcg aggccatccg ctcgaatcga gagatggata      3660
     ttacgcctcc agaatttcga cttcgatacg cgttacgaac caggagacag aaacgttgca      3720
     gatgcttttt caaggctctg tccattccag atcaatcaag ttcttgaaac agatactgta      3780
     agctggataa caccctacat gcagccatgt aggattagca aaaatgaatt ggaacgagct      3840
     agcgcacaag atatcgactt aagcaaaatt cgtgaagctt tagcaaccga ggactggact      3900
     aacgtaccgg ctcagtttaa aaccctcggt atcaaagaac aactggccca atacggagat      3960
     ttggtactac ggggagatcg aattgtaatt cctgcggctc ttcagaaaag agtcacagag      4020
     atagcacatc ttggtcatca aggttcaact gcaatgaaag cacacttaag gtcgcggttg      4080
     tggtttcctg ggctaagatg atttagtaga aagaacctta aaagcgtgta aggaatgtgc      4140
     tatgatggcg aaacctgatc caccatgtcc catggcaaga agattaccta ctcttccatg      4200
     gcaggatgtg gcaatggact ttatcgaagg actgcccaat gattattcat tactggtggt      4260
     agtttgctac acaacccgat ataccatggt cgaaccaatg aaacatccaa catcttcgat      4320
     ggtggttatg gcactgttga aaatgttcag taagttcggt atccctcaat cgataacaac      4380
     tgataatggc cctcagtttc gcgccattga gctcaggaag ttctgcgagt cttacaacat      4440
     ccatctaaat ttaacaactc catactggcc agaacgcaac ggcgctgtcg aaagacagaa      4500
     ccgtaacttg aagaagagga ttaaaatcag tgtagctcaa gataccgatt ggaagcgaga      4560
     tctttacgaa tatctgttat tctatcactc aacccctcag gaaacaactg gtctgtctcc      4620
     ggctaaaatg atgtttaatc gagagctgat tagctacctc cctacgatac aggaacctac      4680
     cagaatattc tttgaaggaa cacaggaacg ggatgcttta atcaaagaac ataagaagca      4740
     atatgctaat gataatagac atgctagaga aaacaacatc atagccggtg acaccgtatt      4800
     gatgcgcaat ttgaaactgg gatcgacgca acctaacttt cgaccagagg agtttgaagt      4860
     aatcaacgtg aacggaagcg agcttgaggt cagatctaaa gaaaccggga aggaatacac      4920
     gagaaaccga actcatttga agaaattgcc attacaaaga tccagcgacg ccgatgtgca      4980
     gccatcttcg acagaggttc tcaacgatga ctcacagcca ggttgtaatg agactaacta      5040
     tgaacgcgca cagactagct gtaaagaaat acagacagaa gatattgttc gtccgcgaag      5100
     gaatagaaat gctccgggta aatacaaaga ttttcatttg tatcaatgaa cctcaaacat      5160
     tgtctcgata tttactaaat catgaacctg tcaataaatg atttcgagta ttttgatatt      5220
     gtagatttta tttccaaact taaggaggga                                       5250
//
ID   Gypsy-270_AA-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-270_AA_;
KW   Gypsy-270_AA-I; Gypsy-270_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2643-2643 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 192 BP; 57 A; 34 C; 48 G; 53 T; 0 other;
     tgtatcgaag tgatatcttt accaaatgta cattcatctt gtgcgcaaaa ctagtatacc        60
     tgaaacgtga gttactttgg tcacgggaca gatctgtaca ccgagagata atgaatgtgt       120
     gtgtgtgtgt ataagagagc gattgaacta cggcagtttt cagttggaca tagacgcgag       180
     cacaccggta ca                                                           192
//
ID   Gypsy-271_AA-I repbase;    DNA;    INV; 5995 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-271_AA_;
KW   Gypsy-271_AA-LTR; Gypsy-271_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5995
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2644-2644 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4615-5094] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           221..2218
FT                 /product="Gypsy-271_AA-I_2p"
FT                 /translation="MDMYNYHADDLEEDEVNYELGIRGIVSNNNLESKRRE
FT                 LRSLINEDRRNPKLYTTTVPLEQEAEWIAGRIRSIQDELKRKISLKAQSRL
FT                 ISLRNRVLRAPSSDVLSKTTFIDLIDAIRNAHFSSNPNQNTEQSLQQQVQR
FT                 FSDYPRAQPLSNTLNPRATPYQPNSLNQPELPPANASPSNSFSIPVMTSSP
FT                 GQNLRTLGNVNLPMMPPQGNQACANLNFPGPPPLAHGQENQHNNLNSPRGQ
FT                 IWQQPQANQAGINLGTPVEPPVAPQGNPTDAATGHNQNMSFLTNELKSFIK
FT                 EAVKDAVRDFIDDRANLPTPTFSSIFRNNQPVTNDVGVNTSNQQFEVPPSA
FT                 FQQNNSQQYDHTRHGNQQAFPPNYYNNLRTKIEKWQVFFNGEVGPKSPSVS
FT                 EFIRQVTILAKSNHVSDAELLQQAYVFFTGEARRWYFTYWEKFVTWQHLIH
FT                 YLTMTFENPNKDKAIEDEMRERKQRPNERFSAYLADMERLSQSLTRKMDPN
FT                 LKFKLIFDNTKLSYRRRLALIPVGSINELAEYCYQFDALEPSLFAHNIYKA
FT                 HTQTVHQMNLEEFEDLKLEDSESEEINALNSGNKYTNRSRFHRKESKGNST
FT                 ANTTPKPECSNEDDENIVRCWNCKNTGHFAKACEQPRRVYCYACGEPNVSK
FT                 TTCPKNHFKSADSKNEN"
FT   CDS           2305..5472
FT                 /product="Gypsy-271_AA-I_1p"
FT                 /translation="MNLNPITCPHITVHILGTPIRGLLDSGASISVISSLD
FT                 LVKRWNLKIEKIELKIQTANGEKLQCVGVVYVPFTFHEVTKVIPTVIIPDV
FT                 SKDLICGYDFWQAFNIRPTIGDNKDVDCSNLNGDPITDRSIQMLDIEFFSP
FT                 IVFSISQIDATRASEPIEDESLDIPSLELPNEEQVTSESIITEHLLSPKDK
FT                 QKLVNVINTFPKSYNGKIGRTTLLTHNIELLPDSKPRKIPSYKYSPKIEEE
FT                 VDKEINRLLEMDAIEECNSDFVNPLLPVKKPNGKWRLCLDARRLNQMTKRD
FT                 EYPFPNMVNILERLEKSKYFSIIDLKDAYHQVILEPDCRDYTAFRTRKGLF
FT                 RYKTMPFGLLNSGATLCRLMNKVLKFDLQPHIFVYLDDIIITSNTLEEHFK
FT                 LLSIVAQRLRDANLTISIEKSKFCQKSVRYLGYILSKDGISVDSAKIDPIL
FT                 NYPAPKSVKEIRRILGLAGFYQRFIANYSRIVSPISDLLKKNKGKFRWTEA
FT                 ADKALLELKAALTSPPILCNPDFDLPFAIETDSSDLAVGAVLTQHINGERR
FT                 CIAYFSKKLSSTQKKYSATERECLAMLMAIDNFKHFVEGTKFTIITDAMSL
FT                 TFLKSMSIDSRSPRLARWAMKIQGYDIEFQYRKGKDNVSADALSRSLGFIS
FT                 GNIADAPHEELKELIKKYPEKYKDHKIVDDKIYKFVTNAAKHDDHTFRWKY
FT                 VPTSIEKAKIIEDIHSQAHFGFEKTFQAVAQKYFWPKMSADVLRYCKECIT
FT                 CKRAKTDNVNANPPCGKPKMSNRPWEIISVDFLGPYTRSRSGNAWVLVVTD
FT                 HFSKFTMVQVMRQAKTSAVITFLENNVFLLFGVPAVLISDNGAQFRSKEFE
FT                 KFLSTYNVQHWSLAAYHPGPNPTERANRVITTAIRASLMDKSQKDWDKGIQ
FT                 HIACAIRNNVHSSTGYSPYFVNFGKQMISSGDEYTRLRDTNPNIDHFDPPK
FT                 LSDDLKHLYEAVRINLKRAYDRYSTYYNLRSKRDIHFEEGEVVLKKNFFLS
FT                 DKSKDFTAKLAPRYNEAVVSKKIGTNCYELKDPKTNKTLGVFHSSKLKKK"
XX
SQ   Sequence 5995 BP; 2038 A; 1316 C; 1135 G; 1505 T; 1 other;
     tattggcgcc caactcaaaa gctcgagtac gatcttttgt attgaatagt tacatgatca        60
     gtttaaattt gtagaatagt aatttttgaa tttttgcttt gaatctgtac atttttttct       120
     cgccttaaat ttttgaatta ggataaagtc aaaaaaaaaa aaaataacag tatcggtcat       180
     tgaatcacat cttcgtagta agtagtacta tcaaatcaga atggacatgt acaattacca       240
     cgccgacgat ttagaagaag acgaagtaaa ttatgagctc ggaatccgcg gtatcgtgtc       300
     gaacaataat ttagaaagca aacgccgcga acttagatcg ttaatcaacg aagatagaag       360
     aaatcctaaa ctttatacaa cgaccgttcc actcgaacag gaggcagaat ggatcgccgg       420
     caggattcgt tctattcaag acgaattaaa gcgaaaaata tcactgaagg cccaatcaag       480
     attgatcagt ttgagaaata gggttcttag agcaccatct tcagatgttc tctccaaaac       540
     cacgttcatt gacttgatcg acgccatcag aaacgcgcat ttcagctcaa atcccaatca       600
     aaataccgag caatcgttac aacagcaagt tcagcggttc tccgactatc cacgagcgca       660
     gccgctgtcc aatactctga accctcgcgc gactccttat caaccaaatt cattgaatca       720
     accagagcta ccaccagcta atgcaagccc aagtaactca ttctctattc cggttatgac       780
     atcgtcccca ggtcaaaatc tgaggacctt aggcaatgtg aatctaccaa tgatgccccc       840
     tcagggaaat caggcttgtg ctaacttgaa ttttcctgga cctccgccgt tagctcatgg       900
     tcaagaaaat caacataata atttaaattc accaagaggc caaatttggc aacaaccgca       960
     ggcaaatcaa gctggtatta atttgggaac ccctgtcgaa ccaccagtgg caccgcaagg      1020
     taacccaact gatgccgcaa caggccacaa tcaaaacatg agttttttaa caaatgagtt      1080
     gaaaagtttt atcaaagaag cagtaaaaga tgcggttaga gattttattg acgatcgcgc      1140
     caatcttcct acacctactt tttcaagcat ttttcgtaat aaccaaccag ttacaaacga      1200
     cgttggcgtt aacacttcaa atcaacaatt tgaggttccg cctagtgctt tccagcaaaa      1260
     taatagtcaa caatatgacc acactcgcca tggaaaccag caagcatttc ctccaaatta      1320
     ttacaataat ttgagaacta agatagaaaa gtggcaggtt ttctttaacg gagaagttgg      1380
     accaaaatct ccgtcggtgt ccgaatttat tagacaagtt acaattctgg caaaatcaaa      1440
     tcacgttagc gacgcagagc ttcttcaaca agcctacgtt ttctttacag gcgaagcgcg      1500
     tagatggtac ttcacgtact gggagaaatt tgtaacttgg caacatttga tccattacct      1560
     tactatgact tttgagaatc ccaataagga caaagccata gaagatgaga tgcgggaacg      1620
     taaacaacgt cctaatgaac gtttcagtgc ttatttggca gacatggaaa ggctttctca      1680
     aagtcttacc cgtaaaatgg atccaaactt gaaattcaaa ctcatattcg ataacacaaa      1740
     attatcgtac agacgtcgtc tggcgctaat accagttggt tcgataaacg agttagcaga      1800
     atattgttat caatttgatg cgctcgaacc aagcttgttt gcacataaca tttacaaagc      1860
     acacactcag acagttcatc aaatgaacct agaagagttc gaggacctca agttagagga      1920
     ctctgagtct gaagagatta atgctttaaa cagtggcaat aaatatacaa acagaagtcg      1980
     tttccataga aaagaatcta aggggaactc aacggctaat acaacaccaa agccagagtg      2040
     ctcaaacgaa gacgatgaaa atatagttcg atgctggaac tgtaagaata caggacattt      2100
     cgctaaggca tgcgaacaac cacgacgtgt ttattgctac gcttgtggcg agcctaacgt      2160
     aagcaagaca acttgtccta aaaaccattt caaatcagcc gattcaaaaa acgaaaatta      2220
     ggagaagaaa ctggggaacc tcttactcct gaacgaaatg tttccgatgt ccccaattac      2280
     gactacttca accaagtgtt caccatgaat ctaaacccaa ttacctgtcc gcatattacg      2340
     gttcacatac tcggaactcc gattcgaggg cttctagact caggagctag tatttccgtt      2400
     attagttctt tagatctggt gaagcgatgg aacctaaaaa tcgagaaaat tgagttaaaa      2460
     atacaaacag caaacgggga aaagcttcaa tgtgttggag ttgtatacgt accgtttact      2520
     ttccatgaag taaccaaagt tattcccacg gtgatcattc ccgatgtgtc gaaagacttg      2580
     atatgcggct acgacttttg gcaagctttt aacatacgac ccacaatagg cgacaataaa      2640
     gatgttgatt gcagcaactt gaacggcgat ccgatcaccg atcgttcgat ccagatgcta      2700
     gatatcgagt tctttagccc aatcgttttc agcatttcgc agattgatgc cacacgtgcc      2760
     agtgaaccaa tagaggacga gagtttggac attccatcac tggagctccc aaacgaagaa      2820
     caggtcacat cagaatccat tataaccgaa catttattgt cacctaaaga taaacagaaa      2880
     ttggtaaacg ttattaacac attcccaaaa tcctacaatg ggaaaatagg aagaacaaca      2940
     ctgttaactc ataacataga attgttacca gattccaaac cacgcaaaat accctcgtac      3000
     aaatattctc ccaaaattga agaggaagtt gacaaggaaa tcaataggtt acttgaaatg      3060
     gatgctattg aagaatgcaa cagcgacttt gtcaatccac tacttcccgt aaaaaaaccc      3120
     aatgggaaat ggagattatg tctcgacgct cgcaggctaa atcaaatgac caaaagggac      3180
     gagtaccctt tcccaaatat ggtcaacatt ctggaacgat tagaaaagtc gaaatacttt      3240
     tcgatcatcg acttaaaaga tgcataccat caagtaatcc ttgaacccga ctgcagagat      3300
     tacacggcgt ttagaacccg aaagggttta tttagataca aaactatgcc ctttggccta      3360
     ctcaacagtg gtgccacatt atgccgcctt atgaacaaag tcttaaaatt tgatttacag      3420
     ccgcatattt ttgtatatct cgatgatata atcatcacct caaatacact agaggaacac      3480
     ttcaaattat tatcgattgt ggcacagaga ttacgagatg caaatctcac aatcagcata      3540
     gaaaaatcta aattttgcca aaagtcagtt cgttacctcg gttatatttt gagcaaagat      3600
     ggcatttcag tggacagtgc aaaaatagac cctattttaa actatccggc tccaaaatca      3660
     gtaaaagaaa taagaaggat tctcggtctg gcaggattct atcaaagatt catcgcgaat      3720
     tacagtcgaa ttgtatctcc aatttctgac ttactgaaga aaaataaggg aaaatttcgg      3780
     tggactgaag cggctgacaa agccttgtta gagctgaaag cagcgttgac gtcacctcct      3840
     attctatgca acccagattt tgatcttcct ttcgccattg agacagatag ctcagactta      3900
     gctgtcgggg cggtcctcac acagcacata aatggagaaa gaagatgtat agcctatttt      3960
     tccaaaaagc tatcatcgac acagaagaag tatagcgcca cagagcgcga gtgcctcgca      4020
     atgctaatgg cgatagataa tttcaagcat tttgtagaag gaactaaatt taccatcata      4080
     acggatgcaa tgagccttac cttcttaaaa tctatgtcga tagatagtag aagtccacgt      4140
     ctcgcacgat gggcgatgaa aatacaaggc tatgacatcg aattccaata ccgaaaggga      4200
     aaagacaatg tcagtgcaga tgctctatca agatcattgg gctttatttc tggcaacatc      4260
     gctgatgctc ctcatgaaga gctcaaagaa ttgattaaaa aatatcctga aaaatataaa      4320
     gatcataaaa ttgtcgacga caaaatttac aaattcgtca ctaatgcagc caaacacgat      4380
     gatcacactt tcagatggaa atatgtgcca acaagcatag agaaagctaa aattattgaa      4440
     gatatccata gtcaagctca tttcggtttc gagaagacgt ttcaagcggt ggcgcaaaaa      4500
     tatttctggc caaaaatgag tgcagatgtt ctccgctact gcaaagaatg catcacttgt      4560
     aagagggcta aaacagataa cgttaacgcg aacccgccct gcggaaagcc aaaaatgagc      4620
     aatcgacctt gggaaataat ttcggttgac tttttaggac cttatactag gtcacgatca      4680
     ggcaacgcct gggtattagt agtcactgat cacttctcta aattcacaat ggtgcaggta      4740
     atgcgacaag ctaaaacctc cgcagtaatc acttttctgg aaaacaacgt atttcttctg      4800
     ttcggtgtac cagccgttct gatttcagac aacggtgcac agtttcgttc aaaagaattt      4860
     gaaaaattcc tttccaccta caatgtgcaa cattggtccc ttgctgccta ccatccaggc      4920
     ccaaacccta ccgaaagagc aaatagggtc ataacaacag ccattagggc ttcattgatg      4980
     gacaaatctc aaaaagactg ggacaaaggt atacagcata tcgcatgtgc gattcgcaat      5040
     aacgttcaca gttctacagg gtactcacca tactttgtta attttggtaa acaaatgatc      5100
     agttcgggtg acgaatatac gcggttgcgt gatacaaacc caaacattga tcacttcgat      5160
     ccaccaaaac tatctgacga tcttaagcac ttgtatgaag cagtgcgcat caacctcaag      5220
     cgcgcatatg atcgatattc gacgtactat aacctgcgat cgaagcgcga cattcacttc      5280
     gaggaaggcg aagtcgtact caagaaaaac ttcttccttt ccgacaagtc taaagatttc      5340
     acggcgaaac ttgcnccacg atataacgaa gcagtcgtca gcaagaaaat cggcactaat      5400
     tgctatgaac ttaaggaccc gaaaacaaac aaaacactgg gcgttttcca ttcgtcgaaa      5460
     cttaagaaga aatagtgtga gaaggaatga tggagcaaaa caaaacacca aaatcaaacc      5520
     tcttccttcc caccacaacc gcaaacaaaa atcactgatg ataaagctat gacaaccgaa      5580
     gcaccatagt aggtttacaa tacatccaca aaacaccttc ttgttagttg gcaggtaaaa      5640
     caaaaacaac tttcactgct atgagggctg cagcgcttgt gcctaccaga ttgaacaaac      5700
     accactctag cgctgctgga ccgttgggta tgtacttctt ccacatacgt accatttcgg      5760
     ttatgtacga aacccctttg gaacgctaac gataataggt tctcaaggcc accgagacaa      5820
     tttttcttca cagcacaata accgagaaca aaatgattca ccgagggcgt agtcactaaa      5880
     aagaaaactt atttcgcgcg agataatcga tagtcacagt cgcggaaccc tccttcagat      5940
     taaatcgaag gcgcgaagca cttagaataa taaattttaa caccaactta gaata           5995
//
ID   Gypsy-271_AA-LTR repbase;    DNA;    INV; 2730 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-271_AA_;
KW   Gypsy-271_AA-I; Gypsy-271_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2730
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2645-2645 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2730 BP; 812 A; 577 C; 573 G; 768 T; 0 other;
     tgaaaattaa attccgtacc gaattgcgag tcgaaaaata cgcgtcgtcg ccgtcgtcgc        60
     ggtcgcggta gactttcgat aactgtctgt caaaagacgt gacagctatc ctttggtttt       120
     cgtcaaagtc cccgtagtaa aataattatg gtttgcgccc ggtagaggga aatgggaatc       180
     ccgaataata gattcctcgc agaaaagcgt gagaaattat tttcgcaaaa acattttttg       240
     ccgtcgttat cgtttgaata gaataataaa ttaaatcgga atccttaaaa agatacttat       300
     tagtatcgta aagtacagac attgtactta tatcgtccgt attactagct ataatccgca       360
     tcaaatatag ttgaaagaaa agtgttttta gtaacactgt tttcgttaag tttgatatcg       420
     gtcgtgtttt gattgtatgc gtgaactcgc aacaatcgcg ttgatttaag acgtggaaca       480
     gttttcgcag ttcctccgtc gaattgacgt cgtaaatttt tactccggtt cgaaatgttg       540
     tcccgtgcgc gtaaaagttt gcaaataccc attatcccgt gttttaagta ccgccgcaag       600
     tttctcaaca tgtttgaggt aaataccgtt ccgttccgta taagtgccgt ttggataaag       660
     attattacca tcaatttcta caataaaatt gtggagatga aaaatatatc gtatcgtctg       720
     gaaaatcaaa atggcggcgt acttgaattg catgagaagc catgattagt gaaaattttg       780
     ctgaaattaa ataaaaaaat caaatttatg atgatgttta aaggatatgt gatgatgtga       840
     tcgatacagt taatgttcga aatagataaa tgtatgtgtt atgacctgat catgttgaag       900
     taaagtgagc aaagaaattt agtgaaaata ggataattga attccagaaa taatagagag       960
     catttatgtg aagacattta aaacgataag tgaccacagt attctgaaaa atttaataaa      1020
     atttttgcaa tgaaaatttt attaaatttt tcatcgccta aacagggggt atatgtaacc      1080
     gctcgcgtag cgaagcctta gaagtggtcc gaagcaatcc agcccaaagc gcttcataac      1140
     tcaatctgga ttaattgagc gttacctcac gtaacgcgtc caaattagtc cgactgttat      1200
     tctagcacgg acagaaacca agccacgcga accgtttgct tttatttttg agcacagaaa      1260
     tgctactctc agaattctct caaattaatt aactggatta accaatcagg aggcgacaca      1320
     ctttggcgca atcctttcca gaggtctact gaaacctcaa aggcaggcac acgatcattc      1380
     caaaatcgac cctatagtga gtgagttcaa acaatagaaa atattccaaa tctaaaattc      1440
     aattgtgcgg tgtgatagtt aaattgcaac ggtaaatcac ttgtgaattt gaattagaaa      1500
     attatattaa atttaattct tttccatagt ggcacagtga gtgcatttgc aaagataaaa      1560
     tataagccag ctaaaaagtg agctttaata gtacaggtaa tatagtgatg ctagtatcca      1620
     cacaatgtga ttctaaatcg aaaatgtgtt tctgttcgaa ggccaaaacc ttcgaacgaa      1680
     ggtttttatt acgggcaggt ccaaatcgga agtggccacg agaaaagacg gcactcccgt      1740
     cgaacaagcc gccgcctcgt gggcgttggt cccaagctcc attttggacc acgctcccca      1800
     ttccacccca ttgttggggg aacaataccg gtgcgtcgcc acatgcttcg taggggtccc      1860
     agcaaacacc ctgagtaagt gaagcctatc attcgcacgt ttctcgaatc gcctgcaatt      1920
     ttccgctaga cgtgactggc cctacgcgat ccttcaccgg cgccgtcgcg ctagccccgc      1980
     tgcaaccagg tgtgcagtga gacgtgtgaa gaccagcgtt catccgatct cgtggttccg      2040
     ctgaccacag ccagtccgtt cacaatcgaa cggcttacag tgactccact gtagcgggta      2100
     ccaaccgcca gccattgttc ggccagctgg accgaattaa agtcgccatc ttcatcaaca      2160
     tcctcaagcc tccgccagcg tcactagcgt caccgacatt gcctgacacc tgcagcaaca      2220
     gcatcgagca acctagttgc gattgaaggt tagacaaaat agttaataag taaaccattg      2280
     tatgcacact actaacaccc taatgaacac aacaagtcga atacaaaatc ccgatgaata      2340
     ccgtacaaac tgtagtgatt tggtaaagtc agttccgtta aattgagagt cttttgagtt      2400
     tggttccgcg atcgatagac ccgccctggg taagttagtc gggcacattt taaaacgtgc      2460
     actgtcgcat cacgctgcaa agcgtgttgg cgcttaagcg acagtgtttc tcaaatccct      2520
     tagggtattg gttcactctg tccgtaacag aagagcagtc tagttcgaat tgagttccgt      2580
     ttgagttggt cgttgagaac tgctcctctt ctgttaccga atccggtttt caggatatct      2640
     acggcgcagg cgtaccgaaa acacaggttt cgtatcgttt cgtctagttt ttgcatcttt      2700
     aagggtttgc cccgtattta tcctgttaca                                       2730
//
ID   Gypsy-272_AA-I repbase;    DNA;    INV; 4195 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-272_AA_;
KW   Gypsy-272_AA-LTR; Gypsy-272_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4195
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2646-2646 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3253-3765] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2374..4164
FT                 /product="Gypsy-272_AA-I_2p"
FT                 /translation="MTPGNKRNDRSPLSWSDETVTAFDRCKQQLAQATLLA
FT                 HPAKSAELSLWVDASDFAAGAVLHQIVEGKVQPLGFFSKKFDKAQLRYSTY
FT                 DRELTAIYLAVRHFKFMLEGRSCHIYTDHKPIVFAFRQKLDKASNRQARQL
FT                 DFIGQLTTDIRHIIGKDNIVADLLSRIAVVQTVPSLDFDALADDQQSDTEL
FT                 RDIQQGKLKSSLKLKLFTVPGSTKQLFCDCSGDRVRPFVTKPFRNVALHAT
FT                 HHLSHPGTRATAKLMTERFVWPSIRKDSIAFARSCLQCQQSKVTRHTQSPV
FT                 SRYSAPDGRFSHINIDIVGPFPPSKGQRYCLTVIDRFTRWPEAFPIPDMTA
FT                 PTIAEAPVSGWISRFGVPIYVTTDRGRQFESSLFSELTRLLGTTHHRTTAY
FT                 HPQSNGIIERWHRTLKSAILCHDPDHWSEHLPVILLGLRTTYKEDIKASPA
FT                 EMVYGTTLRIPSEFFTEHSQNPNEAEFVANLRKAMRYLRPKETAWHGSRNV
FT                 FVHQDLQSCKNVFVRNDSVRPSLSPPYDGPFEVVNRNEKFFKVNMKGRTVN
FT                 VSVDRLKPAYTLEDQQPPKASGPAATSSASIPSTRTTRSGRRVVIPLRYR"
XX
SQ   Sequence 4195 BP; 1053 A; 1186 C; 992 G; 949 T; 15 other;
     gacccnatca gtatnaagcc tacacntcaa tcggagcacn ccatttcttt tcgctcgaga        60
     agcctcccta caaattgang gtacgctaaa gtggtgaccc cgacgtgatc ngtcncaaaa       120
     tcagtatntt tcgatcacgg gtaccgcgaa tcgcgatttc gaagtagttt acggtcgatc       180
     ccatccacga cgatggaaga aaaatccggc gcgagtgaga tgattggcgt ccagccggct       240
     gtcgaaacaa ttagcgcgcc acgtctcaat ccacccaaca tggccgacac gaatatcgag       300
     acgtatttca tgtctctcga attctggttt gccgcgtctg gtatcggcgc ccaacacgat       360
     tcccgccggt ataacatcgt tatggcacag gtgcccccaa aaaaattgac cgagctacgg       420
     tcgattatag aggccactcc agcgaacgac aaatacgcct acataaagac caagctgatc       480
     gagtactttg cggacagtca acagcggcgt cttcagcgtg ttttatccga catgcctctg       540
     ggggatctaa aaccaagcca gctgttcaat gagatgaagc gagttgctgg gaattcgctt       600
     ggggaagcgg tattgctcga tctgtgggca accagattgc cgccacatgc acaggcagcg       660
     gtgatcgctt cgagaggaga cgcttcggac aaaatcacca tcgccgacgc cattgtggat       720
     tccatggttc tccgaaaaat caacgccgtc gactacaacg tgcaaaatgc agcgatggcg       780
     gctcccaaag ctattgcaga gtcagccatt gatccaatac aggagcttaa gcgagaaatc       840
     gccgagctat cgcgacgatt cgagaaagtg atgtccggac aggagcattc tcgtgctcgt       900
     tcacgctccc gttcccgtgg nggtgaaaaa caaattcctc gccgcgagag ggattcttcg       960
     accggaccgt gttggtacca ccgtacgttc ggtagcaatg ccaaaaagtg ccgaaagccc      1020
     tgcacgaccg gccatcaggg ctcatccaat caccaatgac atcactctgc tgatactgtg      1080
     ggggagattg gcgaactttc caccacagcc gcaatctatc gcctgagaat tacggactcg      1140
     accacctcta tgcagttttt gatcgatacg ggtgccgatg tatccgtagt gccgaaagga      1200
     ttgcatgcag caaaagtgaa accaacgaca attaaattgt tcgccgcgaa cgggacgccg      1260
     attanagttt acggtgaagt gttgctcaaa ttgaacctcg gtctccgtcg cgagtttttg      1320
     tggacatttc tcatcgctga cgtgacatcg ggaataatag gtgcggactt tatttgccat      1380
     ttcgatttgc tgatcgattt aaaacgaaac cgccttatcg acaacaccac caatctcgag      1440
     tcggccggaa tactcgcacg gacaagtgaa tattcgatta agacattcag tgtagtttcc      1500
     ccgttcgccg aaatattgtc ggaattccct agcatcaccc gtctcgcgcc tccgggatca      1560
     gtttgtgaat cgtcggtcgt ccaccggatt gaaacaaccg gacagccggt gtatgcnaga      1620
     cctcgacggc tttcaccgga caagcttgag gcagctcgga ccgaattcga acacctaatg      1680
     aagctaggga tttgccgacc gtccagcagt aactgggcca gcccactcca tatggtgaaa      1740
     aggcagatgg ttcccggcgc ccatgtggag actatcgtgc cttgaatgcc caaaccatcc      1800
     ccgatcggta ccccttgccg tacctgcagg acttcacgac cattttgcaa ggtaaaacta      1860
     tcttttctaa agttgacttg cagaaggcct tccaccaggt gcccattcac ccngaggaca      1920
     ttccaaaaac ggccatcacg acgccgtttg gactgtttga gttctccttc atgacgtttg      1980
     gcttaaggaa cgcagcccaa acttttcaac ggctcatcca cgaggtcgtt cgtggattgg      2040
     atttcatctt cccctacatt gacgattcgt tcatcgcctc gtcatcaccc gaagagcacc      2100
     gggaccattt gcgccagctg ttcgagaggc tcaagcagca caacctggca ataaacgttg      2160
     ccaaatgcga attcgctgtg ccgcgaagcg ctcgatttcc tgggacactc cgtctctgcc      2220
     gaaggaatcc gaccgctacc agatcgcgtg gaagcgatna aaaatttcaa gctaccatca      2280
     acggtgaagg aattgaagag cttcctggcc angcccaact tttatcggag attcatccca      2340
     aatgcgatcg aggcccaaat tccgttgctg ggaatgactc ccggcaacaa acgaaacgat      2400
     cggtcgccgt tatcctggag tgacgagacg gttacggctt ttgaccgttg caagcaacaa      2460
     ctcgctcagg ctacactcct agcccatccc gccaaatccg ctgaattgtc tctctgggtc      2520
     gacgcctcgg acttcgcagc aggtgcagtg ctgcaccaga tcgtcgaagg gaaggttcaa      2580
     ccgcttggat ttttctcgaa gaagttcgac aaagcccagc ttcgctacag cacctacgat      2640
     cgtgaactaa ccgcgatcta cctcgcagtg cggcacttta agttcatgct agaaggacga      2700
     agttgccaca tctacaccga ccacaaacca atcgtcttcg cctttcgtca gaagctcgat      2760
     aaagcttcca atcgccaagc gcgccaattg gacttcattg ggcaacttac gacggacatc      2820
     cggcacataa ttggcaagga caacatcgtt gccgatctgc tttcccgcat cgcagttgtt      2880
     cagactgtgc cctcgctaga cttcgatgca cttgctgatg accagcagtc cgacaccgag      2940
     ctacgggata ttcagcaagg taaattaaag tcctcattaa agttaaaact ttttaccgtt      3000
     ccaggcagca caaaacaatt gttttgtgat tgctcaggcg atcgcgttcg cccattcgtt      3060
     acgaaaccgt ttcgtaatgt cgctctgcac gcaactcacc atctgtctca ccctgggaca      3120
     cgtgcaacag ccaaattgat gacggagaga ttcgtttggc ccagcattcg caaggacagc      3180
     atcgcttttg ccagaagctg cttgcagtgt cagcaatcca aggtgacgcg ccacacacaa      3240
     tcacctgtgt ccagatattc agcaccggac ggtcgatttt cccacatcaa catcgatatt      3300
     gtcggtccat tccctccaag caaaggccaa cgctactgcc ttacagtcat cgataggttt      3360
     actcggtggc cggaggcatt ccccatcccg gacatgactg cgccaacgat cgctgaagcc      3420
     ccggtttccg gatggatttc ccgttttgga gtacccatct acgtcacgac cgaccgagga      3480
     cgtcagtttg agtcgtcttt gttctccgag ctcactcgtc tgcttggaac cacccaccat      3540
     cggacaactg cgtaccatcc tcaatcgaat ggtatcatcg aacggtggca cagaaccttg      3600
     aaatcagcga ttctttgcca cgacccagac cactggagcg aacaccttcc ggtgattttg      3660
     cttgggttgc gtactacgta caaagaggac atcaaggctt ctcctgctga gatggtatac      3720
     ggaacaaccc ttcgaattcc atcagagttc ttcactgaac attcgcagaa tccaaatgaa      3780
     gcggaattcg tcgccaatct tcgaaaggcc atgcgttatc tgcgcccaaa ggagaccgca      3840
     tggcacggtt cacgtaatgt cttcgttcat caggacctac aatcgtgcaa aaacgtcttc      3900
     gttcgcaacg attctgttcg gccatcgtta tcacctccat acgacgggcc attcgaggtg      3960
     gtaaacagga acgagaagtt tttcaaggtg aacatgaaag gacggacagt taacgtttcg      4020
     gtcgaccggc tgaaacccgc ctacacattg gaagaccaac aacctcccaa ggcatccggc      4080
     cccgcagcta catcatccgc gtcaattcca tcgactagga ccactcgttc tggtcgacga      4140
     gttgtaatcc cacttcgcta ccgctnaaag gacacctagt ctaggagggg agtac           4195
//
ID   Gypsy-272_AA-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-272_AA_;
KW   Gypsy-272_AA-I; Gypsy-272_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-211
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2647-2647 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 211 BP; 70 A; 64 C; 29 G; 47 T; 1 other;
     tgtagcatca gcaccatcat cagcgtcgca acgctgatcg gtgcgacatc cacagcatcc        60
     tgatgatcag agtgcgataa acgagatttc tcttctatca caccgatagc aacccaattc       120
     tctctctatc gccacacaca acacagtatg catactcatc cacactcaca atagaaaacc       180
     attgtaccca aactgaattn taataaaacc a                                      211
//
ID   Gypsy-273_AA-I repbase;    DNA;    INV; 5136 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-273_AA_;
KW   Gypsy-273_AA-LTR; Gypsy-273_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5136
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2648-2648 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2369-2869] - Reverse transcriptase
CC   Positions [4007-4474] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           350..1504
FT                 /product="Gypsy-273_AA-I_1p"
FT                 /translation="MLLEEISAMRKELAQLRNEKDALLHSTTGSKASNEFG
FT                 STEASTAESFGAVGETILASVNNMSLSTMTIPECVPSDGESDIDKKGYEYW
FT                 KNILTASLNLTQANDESTKMDVFEIKAGPKLLELFNGTKSSTSMPNESSHP
FT                 FSNAIARLDCYFGSRAYTLSQRSKLLNTVQRNGETNIQFVRRVAASAKLCG
FT                 YDKEDDEMEAVARTVIKSSTDKRVRTLAHRNWVRQGSLNDLIDLVRDHDTE
FT                 LSNEEEFQKMRQPQRTASIAAITSHVRPRGHSQRGTFGRFNHAFRGRPPYH
FT                 RTVARSQGSSNISCWRCASVYHDSGHCPVIDKVCHTCKQQGHLARCCPSQG
FT                 VARIGAKRHAEDNNDAPPRKIAAIKNEVETNEIAPVDVSEID"
FT   CDS           1790..5113
FT                 /product="Gypsy-273_AA-I_2p"
FT                 /translation="MPSDCQTEEDAFVIARVAGFRVVFFIDSGAQVNTITK
FT                 KQFEKMLRTGTTRSKLIDLSYTTDKKLRAYATSSNIKVIATFSAELYVSKD
FT                 RPVYIEKFYVVDEGRALLGFNTSTRYSVLIVGLTIPMANIPWPCELATVNS
FT                 VANEPVNEFPKFNVPPVVLHYNKEMPPARNVYTHIPAAYKDLTKRKLDEML
FT                 STGIIELVTDDMDRSFCSSLLVVPKGAEDIRLVVDLRGPNRCIHRTPFRMP
FT                 TFEEILMELHGAKWFSTIDLKSAFFHVVLDQNCRHLTNFFAGEAMYRCCRL
FT                 PFGLCNAPDIFQEIMQSTILSGCKGVVNYLDDVLIFGHTKEEHDKNLKEVM
FT                 ARLQGHNVNINVEKCALGQQEVTFLGFKLSEEGWSVDDSKIQAIQNFRRPE
FT                 NQAEVKSFLGLINFIERFIPQRADKTRHLRELAKSDHFYWTHEHDAEFENL
FT                 TCNAWKTIQTLGYYNRDDKTELFVDASPHGLGAVLVQFDSNAKPRVIACAS
FT                 KALSATEMKYPHTQKEALAIVWGVEKFSTYLMSVQFTIRSDAESNEFIFGG
FT                 LHRIGKRAISRAEAWALRLQPYNFKVERIPGNENLADALSRLIGHAPLTEP
FT                 FDDAADRHLLYLLDAGEMDFSWNEIETQAENDVEQSDVREALNTGQWTSHL
FT                 RCYESQAKHFRTLGSLIFKEDRVVLPNQLRNKALKVAHQGHMGAASMKRIL
FT                 RNYFWWPKLSKDAETYVKNCETCLRLSRKNAPLPLTSRELPHGPWEILQID
FT                 FFADHEFGYGEFLVVVDTYSRYLHVIEMKRMDAEATNEALLRIFEVWGYPL
FT                 AIQSDNGPPFQSDKFIKTWEERGVSVRKSLPLSAQSNGAVERQNKGIKDAL
FT                 AASKLDKTNWRTALNKYLHMHNKVRPLSRLGVTPFEMLVGWKCRGTFPCLW
FT                 SQNSPEQLDRTDIRERDAASKLESKRYADLRRGAKCSDIMIGDRVLIAQQK
FT                 KQKSDPTFSADRYTYTKKINKCKIDALMIGSNIVFLRFTVIAREGAKVVVR
FT                 SDRGVQYSRNVQDVKKLPENLEHESEQVINQELHENDQGLFQTPGDSHQQG
FT                 EDLNEPEAENPVLQFESVEECVGSNAISTRPQRMIRKPNRFKDMILFSIFE
FT                 "
XX
SQ   Sequence 5136 BP; 1700 A; 1020 C; 1152 G; 1262 T; 2 other;
     atggcacggt cggtacgacc gaaaaatctt ctaaaaggta agtaatcaaa cagccgaaaa        60
     gtgttcgatc tgatagtttc aaaagcctcc gatgggaaga cggtgagctt gaaaaaaaaa       120
     aaaaaacttc gangagaagg cgaagtttaa aaaaaaaaaa aaaatagcat gtgttgacca       180
     aacttcaatg agaaggtgaa gtttgcagat gattattaaa gatgaaattt atttctgatg       240
     tgaaggcaga aattcgtaaa aaaaaaaaaa aaaaaaanaa ctgcttggtt ttaaaagaga       300
     tgtgtttggt ttatttctca ggaagtccaa gaaaagtgat acaacgaaga tgcttttgga       360
     ggaaatatca gccatgagga aggaattggc ccagcttcgc aacgagaaag acgctttgtt       420
     gcactccacg actggttcca aggcatcaaa cgagtttggg tcaactgaag caagcaccgc       480
     tgaatctttt ggtgcggttg gagagaccat cctggccagc gtgaataaca tgtcgctgag       540
     tacaatgacc attcccgagt gtgttccatc tgatggggaa tctgacattg acaaaaaagg       600
     atatgaatat tggaagaata ttctaacagc atcgttgaat ctgacccagg ctaacgacga       660
     aagcacaaaa atggatgtct tcgaaattaa agctggtccg aagctcttgg aattattcaa       720
     tggtacgaaa tcttcgacaa gcatgccgaa tgagtccagt catccatttt caaatgcgat       780
     tgcccgtttg gattgctatt ttggatcaag ggcctacacg ctttctcaac gtagtaagct       840
     tctgaacaca gtacagcgaa atggagaaac caatattcag tttgttcgac gagttgctgc       900
     atcagccaaa ctttgtggct acgacaaaga ggatgatgaa atggaagctg tggcccgcac       960
     agtgattaaa agttcaaccg acaaacgagt gcgcacactt gcacatcgta attgggtgcg      1020
     acaaggttcg ttgaacgatt taatcgatct ggtacgcgac catgatacag aactgtctaa      1080
     tgaagaagag ttccagaaaa tgcgtcagcc acaaagaact gcatcgattg ctgcaatcac      1140
     gagccacgtt cgtccacgtg gtcattctca gcgaggcact tttgggagat tcaaccatgc      1200
     attccgtgga agaccaccgt atcatcgtac tgtagcacgc agtcaaggat cgtcgaatat      1260
     ctcctgttgg cgttgtgcaa gcgtctacca cgattctggg cactgtccag tcatcgacaa      1320
     agtttgccac acttgcaaac agcaaggaca tctagctcga tgctgcccat ctcaaggtgt      1380
     cgctagaatc ggagcaaagc ggcacgccga agacaacaac gatgctcccc ctcgaaaaat      1440
     tgcggctatc aagaatgaag tagagacaaa tgaaattgca ccggtcgatg taagtgaaat      1500
     tgattaatat gtaattggaa acataaattt tgagaatttg tttgaataaa tgattgaact      1560
     gataaatgta actaacgtta aaaaaaaaaa aaaaaaatac atgaagagag aaacactttg      1620
     ggtcgatatt gattttctta ttctaatttc taatttccgg catttcacta atcgaatatc      1680
     gactcaagaa atacgcaaat gataagaaat taagtaacaa tttcaatgca tattccaggt      1740
     tcagaattgt acagaagatg acttattagc catagacaaa gttgtatcga tgccttctga      1800
     ctgccaaaca gaagaagatg ctttcgtgat tgcacgtgtt gccggattcc gcgttgtatt      1860
     cttcatagac tctggggcgc aagtaaatac gatcacaaaa aagcaatttg agaaaatgct      1920
     tcgaacaggc acaacacgga gcaagcttat agatctgagc tacaccacag acaaaaagct      1980
     tagagcatat gctacatcgt ccaatataaa agtcatagct acattttctg ctgagctgta      2040
     cgtatcaaaa gacagacctg tatacattga gaaattctat gtcgtggatg aaggaagagc      2100
     attattggga tttaacactt ctacaagata cagtgttctt attgtgggct tgacaatacc      2160
     aatggctaac attccatggc catgtgaact ggcgacagtt aattcggtag ctaatgagcc      2220
     ggtaaatgaa ttccccaagt tcaatgttcc gccagttgtt ttgcattaca acaaagaaat      2280
     gcctccagcc agaaatgttt atacccacat cccggccgct tacaaggatc taacgaagcg      2340
     aaaattagac gaaatgctct caacagggat tattgagctt gtcacagatg acatggatcg      2400
     ttcattctgt tcgtcactgt tggttgtacc aaaaggagct gaggatatac gcttggttgt      2460
     agaccttcgg ggaccaaaca gatgcattca tagaactcca tttcgaatgc caacatttga      2520
     agaaatactt atggaactgc atggagccaa atggttttca accattgacc tgaaaagtgc      2580
     atttttccat gtcgtgcttg atcaaaactg tcgccacttg actaatttct tcgcaggcga      2640
     ggccatgtat aggtgctgtc ggctcccatt tgggctttgc aacgctcctg atatttttca      2700
     ggagattatg cagtccacca ttctttcggg atgcaaggga gttgtgaact acctagacga      2760
     tgtgcttatt ttcggacata caaaggaaga gcatgacaaa aatctgaagg aggtcatggc      2820
     acgactacaa ggccataacg taaacataaa cgtggagaaa tgtgcattgg gtcaacaaga      2880
     agttaccttt ctcggcttta agttgtctga agaaggctgg agtgtagacg acagtaaaat      2940
     acaagcgatt cagaactttc gtcgaccaga aaatcaagcg gaagttaaaa gtttcttggg      3000
     gttgatcaac ttcatagaaa ggttcatacc ccagcgtgca gataaaacac gacatttaag      3060
     agagctggcc aaatccgacc atttttattg gacacatgaa catgacgcag aattcgagaa      3120
     cctcacttgc aacgcctgga aaacgattca aacacttggt tactataatc gagatgataa      3180
     aacagagctt ttcgtagatg cctcgccaca cggactgggt gctgtacttg tacaattcga      3240
     ctcaaacgcg aagcctagag tgatcgcatg cgcttcaaag gcattatcag ccaccgaaat      3300
     gaaatatccc catactcaaa aagaggccct cgcgatagtt tggggagttg aaaaattttc      3360
     aacgtacctc atgagtgtcc agttcaccat tagatcagat gcagaatcca atgaatttat      3420
     attcggtgga ttgcatcgca tcggaaaaag agcaatatct cgtgctgagg cgtgggcact      3480
     taggttgcaa ccatataact tcaaagtaga acgcattcct ggaaacgaga atttggcaga      3540
     cgcattatca agattgattg gacacgctcc actaacagaa cccttcgatg acgcagcaga      3600
     ccgacatttg ctgtacttgc tcgatgctgg tgaaatggat ttttcgtgga acgaaatcga      3660
     aacacaggca gagaacgacg ttgaacaatc agatgttcga gaagcgctca atacagggca      3720
     atggactagt catctccgtt gctatgagtc tcaagcaaag catttcagaa ccctaggatc      3780
     ccttattttc aaggaagacc gagtagtttt gccaaaccag ttgcgaaata aggctctcaa      3840
     ggtagctcat caagggcata tgggagcagc atcaatgaaa agaatcctaa ggaattattt      3900
     ttggtggcca aaactaagca aagacgctga aacatatgta aagaactgtg aaacttgttt      3960
     gagactgtcc cgaaaaaatg caccactgcc gttgacaagt agagaacttc cacacggtcc      4020
     gtgggaaata cttcaaatag atttttttgc cgatcacgag tttggttatg gagaattttt      4080
     ggtagttgtg gatacctact ctcgctatct acacgttatc gagatgaaac gaatggacgc      4140
     tgaagccacc aatgaagccc tcttgcgaat ttttgaggta tggggttacc cactggcaat      4200
     tcaaagcgat aatggtccac ccttccaaag cgataaattt attaaaacat gggaagagag      4260
     aggcgtatca gttcgcaaat cattaccatt aagtgcgcaa tcaaatgggg ccgtcgaaag      4320
     acaaaataaa ggcataaaag atgctctggc agcttcaaaa ctggacaaaa caaactggag      4380
     aactgcattg aataaatacc tgcacatgca caataaagta agacccttat cacgactagg      4440
     cgtaacaccc tttgaaatgc tggtgggatg gaaatgcaga ggtacttttc catgcctttg      4500
     gagccaaaat tcgcccgagc agctggacag aaccgacata cgagaaagag atgctgcctc      4560
     taaactggaa agcaaaagat atgctgattt gcgacgaggg gccaaatgtt cggacatcat      4620
     gattggagac agagtactaa ttgcgcagca gaaaaagcag aaatcagatc ctacattctc      4680
     tgccgacagg tatacttata caaaaaaaat aaataaatgt aaaattgatg cacttatgat      4740
     tggttcaaat attgttttcc tcagattcac cgtgatagcc agagaagggg caaaggtagt      4800
     ggtacgaagt gaccgcggag tccaatactc tcgaaatgtc caggacgtca aaaagctgcc      4860
     cgaaaatctg gagcacgaat cggagcaagt catcaaccag gagttacatg agaacgatca      4920
     agggttattt caaacaccag gtgattctca tcaacaagga gaagatctca atgaacccga      4980
     agcagaaaat cctgtgttac aatttgaaag tgtagaagaa tgtgtaggtt caaatgctat      5040
     atcaacgcgg ccccaaagaa tgattaggaa accgaataga tttaaggata tgatactatt      5100
     ttctatattc gagtaaagag taggagaaag gggcat                                5136
//
ID   Gypsy-273_AA-LTR repbase;    DNA;    INV; 1129 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-273_AA_;
KW   Gypsy-273_AA-I; Gypsy-273_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2649-2649 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1129 BP; 381 A; 271 C; 248 G; 229 T; 0 other;
     tgtagagaag agaagagaaa taaataaatt atataataaa ctcactgaaa tgaaaaacta        60
     ataatcatcg tgtagctttc ttattttaca attccgaaaa aaagaaacaa acaaattccc       120
     cacaaccctc gtacgtttgc ctagaatttc gaatactcag cgtatcagca aaaaaaaaaa       180
     aaaaaagaaa aaggcgcgca attcattgtc caatagggga atttgaaaat ttcccctcca       240
     ctagactgat atctgatcgg gtataaatat gcccagcact ccggtactga gctcattcta       300
     cattcggacg cggacacgat tgtgacttct tctacaagtc aacattcgac tagccaccag       360
     ccagcacgcg cagaaatcgg cgcgaaaccc aatcggacga gccagccaac cgacgcgaaa       420
     agcgtcgcgt aaccaccact tgagcgaggg gccatccggc tacaaaacca ccagtttgag       480
     gcccacgcga gtcattcgga aatcgaacgg cgcagcagaa gcatcagagc agcagcaagt       540
     cttcaagagg caaacacccc ctcgagcgtg agatcgatca cctgacggac agccagccaa       600
     agcgggacgc gaaaaaaaaa accccgcgca attcgcggtt gctagggcaa ccaacgcgtg       660
     ggcagccagc gctctcatcg aagcaagaac ggatcggatc gaatcatcgc gtgtgtgcaa       720
     ccgaaggcgc gaaaattgaa acacgtgctt ctggagaagg tagtcagctg gatacgagcg       780
     gtatcagtag tattcatact acaaatagct tttcctgatc tattagttct tctaagaact       840
     ttttagatta ggactagcat aaagagttat aaggttttca ctaaaaagag ttgttacggt       900
     tttcactaaa gagttcttgg atactattcc tacgcaaaat agttttcctc ggaaaattat       960
     tgcgaacaaa aagagttgca aaaaaaaaaa taaaatattc ccaacggcgc agcaagggtc      1020
     gaattatccc ctaatccacc gaaccggtgc ggcacgatgg atcacgtgga acgagctcgc      1080
     ggcggcgatg aggacatcga acctagtcgc aaaccgcgag ttcacgaca                  1129
//
ID   Gypsy-274_AA-I repbase;    DNA;    INV; 6047 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-274_AA_;
KW   Gypsy-274_AA-LTR; Gypsy-274_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6047
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2650-2650 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3115-3630] - Reverse transcriptase
CC   Positions [4969-5448] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1007..2200
FT                 /product="Gypsy-274_AA-I_2p"
FT                 /translation="MFDIDIKVETLTKCLSSLKKSRYNKISTKTLIEKAKL
FT                 AETLKNEIEKYLLVNEHKIPDTTLMFLSKVARNTNLEIQTLIKLKLKENSD
FT                 EKVTMANPEPVPEFDFKRATALVQTYDGSPSGLNTFLDSVSLLEELTPPGN
FT                 LATTIKFLKTRLSGKARSALPLNPITIQDITNAVKNTCKSTETPDSVLAKL
FT                 KATKDKGDQQKFLETVENLSNQLATLYVDIQIPNQVANQMATKAGVETLIK
FT                 NTTSTELRTVLLATEFSSIQKAIQKFNESQFAPTAQVLNYRVQNNRGRGRG
FT                 NFNNFRGSNPRNASRNNYQNRYQNNYRERGNSYRRGNGRGNHHQNHERNNQ
FT                 NYNRTGQGHTVYYTQAGNCPVPQQLVVGGTNPSSQQQPQQQLNQQMHQCAM
FT                 MNRN"
FT   CDS           3112..5790
FT                 /product="Gypsy-274_AA-I_1p"
FT                 /translation="MLKNKIIQPSVSPYNSPLLLVPKKSTNEDKKWRLVVD
FT                 FRQLNKKIVADKFPLPRIDDILDQLGRAKYFSTLDLMSGFHQIELEENSKK
FT                 YTAFSTTSGHYEFNRLPFGLNISPNSFQRMMTIALSGLPPECAFLYIDDII
FT                 VIGCSVDHHLKNLENVFKKLQYFNLKLNLEKCNFFCPDVTYLGHNISQYGI
FT                 LPDKAKHGTIVNYPKPNNIDDVRRFVAFCNYYRRFIPYFSELAQPLNALLK
FT                 KNAKFVWNEDCENAFTELKNKLISPQILKFPDFTKQFILCTDASKNACGAV
FT                 LSQPYGNIDLPIAYASRTFTKGEKNKSTIEQELTAIHWAITYFRPYLYGRR
FT                 FTVRTDHRPLVYLFSIKDPSSKLTRMRVDLEEFQFDIEYVKGKENVGPDAL
FT                 SRIIVNSEELSNILTLPVQTRSMTKLKTETINNKSQAVETDHLRAYDSINN
FT                 IDAFDMPKLIFSTANNDMYIKITTKNVKKDLALAHFPYALNNFNLNEFMFK
FT                 IDEMATNLRIKKLAIPNDNIIFSLVNEQLFKITCNRILKNVDIIVYKPAKI
FT                 IKCQDEIKKIISENHDTPSGGHVGTSRLIKKLKSSYYWKNMTSMIKNYVKS
FT                 CEKCKQNKHSNKTKEVFIKTTTPIKPFDVVSIDTIGPFTKSTNGNRYALTA
FT                 QCELTKFIIVVPISDKQAKTLAKAFVENCILVHGCPSIIKSDMGTEYKNEI
FT                 FQHICTFLSIEQKFSTAYHPETISSLERNHRCLNEFLRQFINEQHDDWDLW
FT                 LQYYVFCYNTTPHSIHQYTPFELLFGRQAKIPQSFENTVTIEPIYNYDSYY
FT                 SELKFKIQTAIKNTQKLLNKSKTKRIETQKDTNPIDIQEGEIVWLKNENRR
FT                 KLDKVYLGPFEIIQIEHPNVQIKNKITNDVQTVHKNRLIK"
XX
SQ   Sequence 6047 BP; 2411 A; 1079 C; 967 G; 1587 T; 3 other;
     ttatatggct gaccgcgcag gtgtttaacc gtgaaaaatt ggcaatttgc cctagtgaaa        60
     gtagtttgtg cttgtgatgg gcaaagaaca atcaaaatct gcctccacgt cgggagacgc       120
     ccatgttaat atattgaacc agatcgaaga aaataatgaa cgtcacaacg accacgaact       180
     gaagttatgg gtactgttag cccttaacat cgctcaaata gtgtacaaaa tgttcagttg       240
     gtaccagaaa agagtttcta gaaaagcctt tagaaaagga tgtgcccaat ccatggaaaa       300
     catcgacaaa gcatagtgtg aaaatggcca tacaaaatgc catagtgaac ttattaaatg       360
     aacttganag tgcagtagga taccaaacga tagtgataat caacgcagaa agaccaacga       420
     taaagaaatt aataaaattg ctacacgacg aaaaggcaat tgaaatactg tccagcagaa       480
     acaataagca gtatgtgaaa gngaacagtg acataataaa aattagctca acaccagaat       540
     tcaaaaacgt taacaatgaa cacttagtgt ttgagctggc aaagcttatt ccaactgtaa       600
     acggaactgt catccttaca acaactgatg gcctaataac acatcgccag gccttagaac       660
     gagacatcgg aggccgaatt atcgggtatt ttttctaaac caatgaagaa acaacggatc       720
     tcacggtgtg agctacaaca tcaatccatg ttacgtgaac tggaggtgaa acgacaagcc       780
     gccataacaa gatggaaagc tggatccaca tggtataaac agtacaacca agtacaacca       840
     agagaaaaac aacaagaacc agtgcaatca aaagcagtaa caacggacca atggggaatt       900
     aggaggacac tcgacatcga tttgatacaa catctagcag tgaagttacg acgcaaattt       960
     aaaaaaaaaa aagtaagtca aaataagttt tctttcaatg ttctaaatgt tcgatataga      1020
     tattaaagtt gaaacactta caaaatgctt gtcaagctta aagaaatcta gatataataa      1080
     aataagtaca aaaacattaa ttgaaaaggc taaattagca gaaactttaa aaaatgagat      1140
     tgagaaatat ttgcttgtaa acgaacacaa aattccagac actacactaa tgtttttatc      1200
     gaaggttgcg aggaatacca accttgaaat ccaaacctta ataaaattaa agcttaaaga      1260
     aaattcagac gaaaaagtaa ccatggcaaa cccagagcca gtaccagagt ttgactttaa      1320
     aagagcaaca gctcttgtcc aaacgtatga tggttcacct agtggcctaa acacattttt      1380
     agactctgtt tctctactgg aagagttaac accaccagga aatttagcta caactataaa      1440
     gtttttaaaa acacgtctca gtggtaaagc acgttccgct ctaccattga acccaataac      1500
     tatacaagac ataacaaatg ctgtaaaaaa cacatgtaaa agtacagaaa cacctgattc      1560
     tgtacttgct aagttgaaag ccacgaaaga caagggcgat caacaaaaat ttttagagac      1620
     agtagaaaac ctgtcgaatc aattagcaac attgtatgtc gatattcaaa taccgaacca      1680
     agtagcaaac caaatggcta caaaagcagg ggtagaaacc ctgattaaaa atacaacaag      1740
     tactgaactt agaaccgttc tattagctac cgagttcagc tctatacaaa aggcaataca      1800
     aaaattcaat gagtcgcagt ttgcaccaac ggctcaagta ctgaattaca gagtacaaaa      1860
     taatagagga agaggacgtg gaaattttaa caatttccga ggatccaacc ctcgaaatgc      1920
     ttctcgtaat aactaccaaa accggtatca aaacaactat agagaacgag gaaatagtta      1980
     tcgtcgtggt aatggcagag gaaatcatca ccaaaaccac gaacgaaata accaaaatta      2040
     caataggact ggacagggac acaccgttta ttatactcaa gcgggaaact gtccagtccc      2100
     ccagcaattg gtagttgggg gaaccaatcc atcgagccag caacaaccac aacaacaact      2160
     aaatcaacag atgcatcaat gtgcaatgat gaacagaaat taatctatca agtaaataca      2220
     aactgctcaa attttattaa tatcaaactt ggtttttcaa gttccgaatg tactttattg      2280
     gtagattcag gagctgaatt atcaattttc aaaaacaata aaattaatca accttcatta      2340
     attaatacaa acaacaaatg taacattaca ggcataaaca atctttcagt acaaacatta      2400
     ggatcagcag aaactaaaat ttgtttacca aacagttcag aaatttatca cacattccaa      2460
     ttggttgact attcatttcc gataccaact gatggaattt tgggacggga ttttttgata      2520
     aaattccgct gttcaataaa ctatgacaca tggctacttt caggaaattt tggttctgaa      2580
     gagattcaga taccaattga ggacaattta aatggagaat ttgttattcc accacgttgt      2640
     gaggtgttaa aacaaattta tacaaaagaa ttaaatgaag atcaggtgtt aatttcaaag      2700
     gaaatatgcc ctggtgtttt ctgtgccaat acgttgataa ataaaaataa taaattggta      2760
     aaattcataa acacaaatga taaatttgta acaatataga aaaattttag caaaaaatta      2820
     gtacctttgg aaaattatga tattttttca tttgacaaat tgaatgatga gaaccgaaca      2880
     aacaaacttc ttcaggaatt aaaaacagat catattccaa acacttacaa agaaaaactt      2940
     atcaaattat gttcaaaata caatgacgta ttcgccttaa aaggagatac gctcacttcc      3000
     aacaatttct ataaacaaac aataaattta aacgacaata gcccagttta tattaaaaac      3060
     tatagaatcc cagaaatcca caaaactgaa atcaacaatc aagtagacaa gatgctaaaa      3120
     aataaaataa tacaaccctc ggtctcaccg tacaattcac cacttctgtt agtgcccaaa      3180
     aaatccacta acgaagataa aaaatggaga cttgttgtcg attttaggca actaaataaa      3240
     aaaattgttg ccgacaaatt tcccctaccc agaattgatg acatattaga tcaattgggt      3300
     agagctaaat atttttcaac tctggatctg atgtcaggtt ttcatcagat tgaactagag      3360
     gaaaattcaa aaaaatatac tgccttctcc actacatccg gtcattatga atttaatcga      3420
     ttaccgttcg gtttgaatat ctcaccgaat agtttccaaa gaatgatgac catagcactc      3480
     agtggtttac cccctgagtg tgcctttttg tacatagatg acatcattgt tatcggttgt      3540
     tcagtggatc atcatttaaa aaatttagaa aatgttttca aaaaacttca atacttcaat      3600
     ttaaaactga atcttgaaaa atgtaatttt ttttgcccag atgttaccta tctaggtcat      3660
     aacatctctc aatatggaat attaccggat aaagcaaaac atggaacgat agtaaactat      3720
     cctaaaccaa ataacataga cgatgtgagg agatttgttg ccttctgcaa ctattatcga      3780
     cgatttatac cttatttctc agaactagca caacctttaa acgcactatt aaagaaaaat      3840
     gcaaaatttg tttggaacga agattgcgaa aatgccttta cagaattaaa aaacaaactt      3900
     atatcaccac aaatactaaa gttcccagat tttactaaac aattcatact atgcacggac      3960
     gcttcaaaaa atgcgtgtgg tgcagtttta tctcaaccat atggcaatat cgatttaccg      4020
     attgcttatg cgagtcgaac gtttaccaaa ggagagaaaa ataagtctac aatcgagcag      4080
     gaactaactg caattcattg ggctataacc tactttcgtc catacctata cggcaggcga      4140
     tttactgtac gaacagatca tcgtccgtta gtatatttat tttcaattaa agatccgtcc      4200
     tcgaaactga ctagaatgcg agtcgatttg gaagaatttc aatttgatat agagtacgtg      4260
     aaaggaaaag aaaatgtcgg gcctgacgca ctgtcacgta ttattgtcaa ttcggaagaa      4320
     ctttcaaata tcctcacttt accagttcag acgagatcaa tgacaaaact caaaactgaa      4380
     acaataaata ataagtcaca agctgttgag actgatcacc tcagagcata tgactcgatt      4440
     aacaacatag acgcatttga catgcctaaa ctaatatttt caaccgcaaa caatgacatg      4500
     tacataaaaa ttacaacaaa aaatgtgaaa aaggaccttg ctctagcgca ttttccttat      4560
     gcattgaata atttcaatct aaacgaattt atgtttaaaa ttgatgaaat ggccacaaat      4620
     ttaagaatca aaaagctagc aattccaaat gataatatta tattttcgct ggtaaacgaa      4680
     cagctgttca aaataacatg caacagaata ttgaaaaatg tcgacataat agtttacaag      4740
     ccagcaaaaa taattaaatg tcaagatgaa ataaagaaaa tcatttcgga aaaccacgat      4800
     accccttcgg gaggacacgt tggtacatcg agacttataa aaaagttaaa aagttcatat      4860
     tattggaaaa atatgacatc aatgattaaa aattatgtca aaagttgcga aaaatgtaag      4920
     caaaacaagc actctaataa aactaaagaa gtgtttatca aaaccacaac acctataaaa      4980
     ccttttgacg ttgtatcaat agatacgatc ggaccattta caaaatctac taatggaaac      5040
     cgttacgcgt tgaccgcaca atgcgaatta actaagttca ttatagtcgt acctataagt      5100
     gataaacaag ccaaaacact agcaaaggca ttcgtcgaaa attgcatcct tgtacacggt      5160
     tgtccatcga taatcaagtc agacatggga accgaataca agaatgaaat atttcaacac      5220
     atttgtacat ttttatctat agaacagaaa ttttcaactg cttatcatcc agagacgata      5280
     agtagtttgg aaagaaacca tcgttgcctt aatgagttcc tacgtcaatt tataaacgaa      5340
     cagcatgacg attgggattt atggttacaa tattacgttt tttgttataa tactactcca      5400
     cattctatac atcagtacac accatttgaa cttttatttg gtagacaagc aaaaattcca      5460
     caatctttcg agaatacagt aactatagaa ccgatttata actatgattc ctattattcc      5520
     gaattaaaat tcaaaatcca aacagcaatc aagaacacac aaaaattgtt aaacaaatca      5580
     aagactaaaa gaatcgagac acaaaaagac acaaatccaa tagacattca agagggagaa      5640
     atagtttggc tgaaaaatga gaacagaaga aagctagata aagtgtattt aggaccattt      5700
     gaaataatac agattgaaca tccaaatgta cagatcaaaa ataaaattac gaatgatgtc      5760
     caaacagtcc ataaaaatag attgatcaaa tagttagcaa taaaaactag ttaagttacc      5820
     gagcctaacc tttaaaaaaa ataattaaaa gaaaaaaaaa ttgaaaaaaa aggtaggtca      5880
     aaagtctgac tatatgttag acgtgagaaa ttcggttaga ttaataatta attttataaa      5940
     ataacaaaat tcaatcaaat atatgttcaa atttgtaaaa gacaattgga aagagacctt      6000
     tctagaataa tttcatttca tttcattatt ttcccaangg ggggtgg                    6047
//
ID   Gypsy-274_AA-LTR repbase;    DNA;    INV; 546 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-274_AA_;
KW   Gypsy-274_AA-I; Gypsy-274_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-546
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2651-2651 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 546 BP; 167 A; 128 C; 108 G; 143 T; 0 other;
     tgtagcgtat atgtttaagc gcacatcact gtaaaatata aacattcaat gtcaatgcca        60
     ctaaaggcac tatcttatgc aacacacagc tggttgcaat tgaatgagac cctttccatg       120
     ctcgcactct cgcttctcgc ctacccacta tgtgtggtct aagctgaagc atgattgcag       180
     gcaaagtgtc aagtgacaca tgccgggcac tgggcgcgtt caacttacaa acagctgagg       240
     gtgcatcttt accaaattct gtcgttccaa ttgtattcaa tcaatagcta tcctgttcta       300
     ctgtcccact tcaaccaata atgtaaatgc acgttttgtt tgtagagtct aaaggttgga       360
     gacttttcgg catgtaaatt aagatataaa agcaaccgga aaataaagca aagcagagta       420
     tgactttaaa ctccaatctg gactcactct tttgcgatcc ctagtggaca ccgagaaaga       480
     aagtccttat gcgatcccaa aagggacacc gctccaaaac gcactaaggt gaatacgtcg       540
     cgagca                                                                  546
//
ID   Gypsy-275_AA-I repbase;    DNA;    INV; 7206 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-275_AA_;
KW   Gypsy-275_AA-LTR; Gypsy-275_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7206
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2652-2652 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3359-3880] - Reverse transcriptase
CC   Positions [4844-5320] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           570..2204
FT                 /product="Gypsy-275_AA-I_2p"
FT                 /translation="MSATTMEMSLLLAKYHAMNPSHLTIDELEHELKIRGA
FT                 PMDALRSASERTLRCLLKEEKDKSDTVFPFVSESVVEELEVCDDKLNGIKN
FT                 HLMKRGSKRAPEQSNKTRLIHILFRMQRLRAYAKEEEELNSLAVIAGECVK
FT                 LLDVYFSATSHLPEVREAEIAIMNESLHRMRNEVENDNAVQEQNGNENEKG
FT                 SAEENRTDSNEKNGEEYEEGAVGGNRVTVESDGDRLAAEVAKLTAVVGVLL
FT                 QRITVLEANQAISQPVESHAKTTNSTRIEEHANEGRESGQVQAKPVDFLDW
FT                 LKERNDSLETPGMSEDLKRVGRKVDEKSQNMIGKIRSESRFPIHKWAVRYD
FT                 GMDNGRKLNEFLKEVEFNARSEGFSEDELFQGAHHLFTQKARSWYMEVCCE
FT                 IGSWRELIRELKREFLPVDIDYVYERQAGNRKQGAREKFQDFYLDMVRIFR
FT                 SMSTPWDEKRKFDVLFRNTREDCRIAMLAANVDSIPKMRDFGKRFDSINWH
FT                 MYQRREGRFTRKDTIEIDEVSQQSSYRENRDRYQKGGQQKGAPNAYQSF"
FT   CDS           3269..5692
FT                 /product="Gypsy-275_AA-I_1p"
FT                 /translation="MIRDGVVEPSESDWALPVVPVKKRDTEEVRLCLDARK
FT                 LNERTKRDAYPLPHQNRILSQLGPFKYLTTIDLSQAFLQVPLNRQSRRFTA
FT                 FSVPGKGLFQFTRLPFGLVNSPATLSKLMDRVLGHGELEPAIFVYLDDIVV
FT                 ASHTFEEHIRKLRDLARRLKEANLYINLEKSKFCCHELPYLGYILSEQGLR
FT                 PNPDRVQAILGFEAPKSVRSLRRFLGMVNYYRRFINNFSELTAPLTDLLKN
FT                 KPKRVRWNEAAENAFRAIKERLIVAPVMANPDFSLPFSVQTDASDNALAGV
FT                 LTQVQNGVERVIAYHSEKLKGAELNYHAAEKEGLAALRCIEKFRCYIEGTH
FT                 FTLVTDSSALSFIMRAKWRSSSRLSRWSITLQHYDMDIRHRKGKENIVPDA
FT                 LSRSVEALDVEESDRWYRDLFDAVNEDPEKYIDFRIQDGKLFKFVASQSDV
FT                 LDYRFEWKECVPESERSRIIREEHDGMMHIGFEKCIEKVKRRFYWPRMSAD
FT                 VKKYIAKCENCKISKHSTASTAPEMGNQRIATRPFQIVCMDYIQSLPRSKQ
FT                 GNAHLLVVLDIFSKYCLLAPVKKIASGNLCTILEERWFRRLSVPQYVITDN
FT                 ATTFMSKEFQELLKKYDIQHWANARHRSQANPAERLNRTINSMIRTYVRND
FT                 QRLWDTKISEIEFVLNNTVHGSTKLTPHRVIFGSEMVTRGSHHRLEEESEL
FT                 SEAERAERMQIISRKNMELVRQNLKKAYDNTKRQYDLRHKRYSPTFTVGQR
FT                 VFKRSFTQSVAGKDFNAKLGPQYIPCVIVAKKGSSSYEVSDLNGRSLGVFS
FT                 AADLKA"
XX
SQ   Sequence 7206 BP; 2241 A; 1376 C; 1716 G; 1861 T; 12 other;
     cttggcgacc aactgaaatt tttgcgcaga ttctcagtgc ccgggtacac ttgaatgcca        60
     attgcgtgtc tgcagaagtc tctgggaaaa cacccagact tcattgacca atctttacca       120
     aaagcacaca aaacaggtaa ccaactggtg attgaacttc aatatatctt atttcattaa       180
     gaagggtctt ggatgtatgt gaacggtctg attagccgcc aacagttgag taaaactaac       240
     taaaagaata cgagttgtta agttggagaa ttttcgcggt gaattccgga aaggctcagt       300
     gtagtgtgat tttcagactg aacagtaaaa caccaaacaa tcacgaaacg tttattaacc       360
     gtaaacggac taaaactagg atttttcaaa ttgatttgct tcgttaggga gcgtgaacaa       420
     attttaggat tttttaatta caattttcag ctttcaagca acgaaagtgt ttacaaaatt       480
     aggattttca aattggtttc tgaggaggtt cctctggaac aacataacta ggttcttttt       540
     aaattttatt ttcgattttt tctggttgaa tgtcagcgac aacgatggaa atgtccttgt       600
     tgttggcgaa gtaccatgcg atgaatccca gtcatctaac gattgatgag ctggagcatg       660
     aattgaagat ccgcggtgcg ccgatggatg ctttacgtag cgcgtctgag agaaccctga       720
     gatgtttgct gaaagaagag aaagataaat cagacacggt atttccattt gtcagcgaat       780
     cagtagtaga agagctggaa gtatgcgacg ataaattgaa tggtatcaaa aaccatttga       840
     tgaaacgagg ttcgaaaaga gcaccagaac agtcgaataa aactagactg attcacattt       900
     tatttcgaat gcaacggctg agagcctacg caaaagagga agaggaattg aacagtctag       960
     cggtaatagc tggagaatgc gtcaagcttc tagatgtgta tttctcagct acctcccacc      1020
     tccctgaagt gagagaggct gagatagcaa tcatgaatga aagcttgcac cgaatgcgaa      1080
     atgaagtgga aaacgacaat gctgttcagg agcagaatgg aaatgaaaac gaaaagggat      1140
     ctgcggagga gaatcggacc gattcgaatg agaaaaatgg agaggagtac gaagaaggtg      1200
     ccgtgggcgg caatagagtt accgtagaga gcgacggtga tagactggca gctgaggttg      1260
     caaaactgac agcggttgta ggagtgcttc tgcagcgtat cactgtgctg gaagctaacc      1320
     aagccattag ccaaccagtt gaatcacacg ctaagaccac caacagcact agaattgagg      1380
     agcacgcaaa tgaaggtagg gaatcnggtc aggttcaagc gaaaccagta gatttcctag      1440
     attggttgaa ggaaaggaat gattcgctag aaacaccggg aatgtcagaa gatttgaaga      1500
     gagtagggcg taaggtggac gaaaagagtc agaatatgat aggaaaaatc agatcagaga      1560
     gcaggtttcc gattcataaa tgggcagtac gatacgatgg aatggacaat ggacgtaagt      1620
     tgaacgagtt tctaaaggag gtggaattta acgctaggtc tgaaggtttt tcggaagatg      1680
     agttgttcca gggtgctcac catctgttca cacagaaggc gagatcttgg tacatggaag      1740
     tctgttgtga gataggatcg tggagagagt tgattagaga gttgaagaga gagtttttac      1800
     ctgtcgacat cgactatgtc tacgaacggc aagctggaaa ccgtaagcaa ggtgccaggg      1860
     agaagttcca ggacttttac ttggacatgg tccggatttt ccgtagcatg tcaaccccgt      1920
     gggatgaaaa acggaaattt gatgtcctct ttcgtaacac ccgggaagac tgtcgcatag      1980
     caatgctggc ggcaaacgtt gactcgattc ctaaaatgag agattttggg aaacgttttg      2040
     actctattaa ttggcacatg taccagagaa gagagggtag gtttacacgg aaagacacga      2100
     tagagataga tgaggttagt cagcagtcgt cgtacaggga gaatcgcgac aggtatcaga      2160
     aaggaggcca acaaaaaggt gctccgaacg cntatcaatc tttcngatca aattatcagc      2220
     agccacagaa acgtgaatgg aaacagcaaa aatcaatgga acaaaagcaa aaccccgata      2280
     aaaactttca gaaacctagg ccgaacaatt cacctcacag aaactcagtt cctagcacta      2340
     gtggaacgaa tgctctggaa aggatagtga aagcatacat tccattaaan aaaaacgttt      2400
     gctataactg tcatgaagga gggcataatt tccatgagtg taaccaggaa cggaaagttt      2460
     tctgtgagcg ttgtgggttc cctggtttcc atacgaagga ctgtccgtat tgcgaatcaa      2520
     aaaacggcca aaagactgtc tagagaggca aggcagtctt tctcacaact ccacaagacc      2580
     tcacacagag ccagcagttg cagagacact cgagcaactc ggctattcgc gagtgagtgg      2640
     agaaccgaat gacgatgtag aagtagccac tatgttggtc actctcagcg atgatcccag      2700
     accgtttgtg agagtagaat tgttaggcat ttctctctta gggttgttag atagtggtgc      2760
     agctagaact gtgttaggga cagggagtaa acagctgatg agtgcgttaa atttgaaatt      2820
     gagacccacc acgttgagtc tgaaaacagc cggaggcgaa aggttagatg tgttaggtac      2880
     aaccgatatt cccattacgt tcaacggaga gaccaaaatc ataccggtna tggttgctcc      2940
     gaantcgaat cgtcgttgta ttttgggata cgacttttgg caagcttttg ggatccgtcc      3000
     aacattttct cagtccgttg atttgatcga tggggctgaa acagaaacag tagatagtgt      3060
     taatgagctg gatgaaaatc aaaaacaaca gctggaggat gtgaaaagat tgttcttagt      3120
     agctgctcca ggacaacttg gaaaaaccag tctcattgag cacaaaatag aattgaagga      3180
     cgaattccaa aacgcggatc cggttcgtaa gaatccgtac ccttggagtc ctgaaattca      3240
     aaagaagatt caccgagcgc ttgatgcgat gattagggac ggagtcgtag aaccatccga      3300
     atcggattgg gctttaccag tggttcccgt aaagaaacga gacactgaag aggttcgact      3360
     ttgtctcgac gccagaaagc tcaatgagcg cacaaagaga gacgcgtatc ctctccccca      3420
     tcaaaatagg atcttgagcc aattaggtcc atttaaatat ttgaccacga tcgatctgtc      3480
     acaagccttt ttgcaagtgc ccttgaaccg tcagtcgagg aggttcacag ctttttcggt      3540
     gccaggaaag ggactttttc agttcactag gctncctttt gggctggtga atagtccagc      3600
     gacactgagt aagctgatgg acagagtttt gggtcacggt gaactcgaac cagctatttt      3660
     cgtctacctt gacgatatag tggtagcgag tcacacgttc gaagagcaca tacggaagct      3720
     gagggattta gcgagacgat tgaaagaggc gaatttatac ataaatttag aaaagtcgaa      3780
     attttgctgc catgaactac cctacctcgg atatatcctt tctgaacaag gattgcgccc      3840
     taacccagat cgagtccaag cgatcctggg atttgaggcg ccaaaatccg tgaggtcact      3900
     gagaagattc ctcggtatgg taaactacta ccgacggttc atcaataatt tcagcgaact      3960
     caccgcacct ctaacggatt tgttgaaaaa caaaccaaaa agagtgcggt ggaacgaggc      4020
     agcagaaaat gcatttagag ccatcaaaga gaggctcatc gtagccccgg tgatggctaa      4080
     tcccgatttc agcttaccgt tttctgtgca aaccgacgcg agtgataatg ctctggctgg      4140
     tgtactcacc caggtgcaga acggggtcga gagagttatt gcatatcact ctgagaagtt      4200
     gaaaggtgct gagctcaact atcatgcagc ggagaaggag ggcttggctg cccttcgctg      4260
     cattgagaag tttcgatgct acatagaagg cactcatttc acgcttgtga ctgattcttc      4320
     ggctctttcc ttcataatgc gtgccaaatg gagatcgtcg tcacggttga gtcgttggag      4380
     catcaccctc caacactatg acatggacat cagacaccga aaagggaaag agaacattgt      4440
     ccctgacgct ctgtctcgat ccgtagaagc gttggatgtg gaggagtccg acagatggta      4500
     tcgagatctt ttcgatgcag tcaatgagga ccccgagaaa tatatagatt ttcgaatcca      4560
     ggatgggaaa ctcttcaagt tcgttgcctc tcagtccgat gtgctggatt ataggttcga      4620
     atggaaggag tgtgttcctg aatccgaacg ctccaggatc attcgggaag aacacgacgg      4680
     aatgatgcac attggatttg agaagtgcat cgaaaaagtt aaacgaaggt tttactggcc      4740
     aagaatgagc gccgatgtga agaaatacat agccaaatgt gaaaactgca aaataagcaa      4800
     acattccaca gcctcaaccg ctccagaaat gggaaatcaa cgaattgcaa ctcgtccctt      4860
     ccagatcgtg tgcatggatt acatacaatc tctgccccga agcaagcagg gcaatgccca      4920
     cttgttagtt gtcttagaca tcttttctaa gtactgcctg cttgctccgg tgaagaaaat      4980
     tgcatctggt aatctttgca ctattctgga ggaacggtgg tttcgtcgac tgtcagtccc      5040
     tcagtacgtc attacggaca acgccacgac tttcatgtcc aaggaattcc aggagttgtt      5100
     gaagaaatac gacattcaac actgggcaaa tgcgcgacat cgaagtcagg ccaatccagc      5160
     ggaacggttg aatagaacta tcaactcgat gattcgcacg tacgtccgta acgatcaaag      5220
     gctatgggac actaaaatct cggaaattga gttcgtgtta aacaacactg ttcacggatc      5280
     aacaaaactg acccctcacc gagtgatctt tgggagtgag atggtaactc gaggatcaca      5340
     ccatcgttta gaggaggaga gcgagctctc tgaagcagaa cgagcagaga gaatgcagat      5400
     catcagcagg aaaaacatgg agttggtgag gcaaaaccta aaaaaagcgt atgataatac      5460
     aaaacggcaa tatgatctac gtcacaaacg gtactcaccc acgtttactg tcggacaacg      5520
     ggtattcaaa cgtagcttca cccaatcagt cgcagggaag gatttcaacg cnaagttggg      5580
     tccacagtat attccttgtg tcatcgtcgc aaagaaagga agcagttcct acgaggtctc      5640
     ggacctgaat ggtcggtcgc tgggagtgtt ctcggcagcg gacctgaagg cctagaaaaa      5700
     caactaaaaa tccatggtac taattagatg tggctctgat tcttgagtga tagaaggtca      5760
     gtgctgaaga agatatccaa tccgttaatg gttcattagg atggattttc tgaatcacac      5820
     tgcgtaattc tgaatcgagg atggaatcag tagcgaaatc aaagcgtgtc agatacactc      5880
     agcatgaatg cattcaacca aaaaattatc gatttttttt taatgtgtat gtaatttcta      5940
     ttactttttt ttattttgaa aattagtttg cgaattccaa ttttgaaaat tttgaatcag      6000
     ctcaattatg caccactgca atcatctgac ttgaatacaa tcttgtaaac aagtttctaa      6060
     gactgcatta caatcagttg atagacgctg tgcataattt gagtgtgtga gcgtgcaaat      6120
     caattgtgaa tggccaacaa atgatgatct tcaatcacga aacacattaa tttcagcact      6180
     tttctgaatc acccatgatc agtaatattc aaagcatcac accaacaagc aatagcacct      6240
     gnaacaccat acttaccctn ttgtgtggaa acatgcaact atcatacgat gaatttttac      6300
     ctaaattcat tgaataaagg ggatcttatg gaagaaatac caatcaaatg atcactgggc      6360
     ccaataaata gacacaatgt cacaaaattg atanttttct tccnaagcgc gcactttatc      6420
     ctagatttta gggaaaattc accgaccaca agtctgccac gtttcaccat agtcacgata      6480
     taataggcat ttgacagttt ggttgttcac agtataccgc gcgtacacac tgataagccg      6540
     ataacgttat caaaaataac cacagttgat taatatcgat atgggttaac tccgacaaag      6600
     cagaatattt gaaaagggag aaaatgatat tttcaccgta ctcatgagta actttgtaca      6660
     ttttgtaaat attgttcatt ccggaattct tttactagta atatttttgt gtttttttaa      6720
     attgttgcat gattattgaa atatgcatgt tttagaatag agtatgatat tttttaattt      6780
     gttcaatgta gttcgacttg tatatatttt atttagtttt gcttcaatgt tggtaaaagt      6840
     tcaaaatagt ttaatatgtt cgctggagac cggaatcgta agatgttgat ggtcagtaga      6900
     aagcaaagac tttgaaatag cgtggagttg aaataaacaa cgatgacacc ttatgacccc      6960
     gaacaatatt attactgttt ttaaaaggct actttttcca tagcttgcaa tcgtgattcg      7020
     ttatttctga aggagtttga gatgtttatg attcggtttg tgttaaaaaa agagtgtgtt      7080
     agtaagttta gttgtgttgg tgaaaattct ggttcagagg tacgcgtcac aaagttgttg      7140
     ttggagtgta ttaaaataaa aaaaaatcag cttctctgat tttttttaac ccgagcgggg      7200
     ggagag                                                                 7206
//
ID   Gypsy-275_AA-LTR repbase;    DNA;    INV; 1121 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-275_AA_;
KW   Gypsy-275_AA-I; Gypsy-275_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1121
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2653-2653 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1121 BP; 306 A; 249 C; 326 G; 240 T; 0 other;
     tgtaaccagt ggtgtgtctg tctgtccgag atttttgaga ttttcgcgat gtagagtgtt        60
     ccgtgtaata gtttgtacga aaaaaccaag aaggtgtttg agtattcgtg tgcatcacca       120
     cccatcgccc actggacagc atgcagccac atcgaaacaa gttccgctac tcaccaccag       180
     gcatcgctgg acgagcagaa tgggcggcca ttgggggtgg tgtagaagga gccatgatgg       240
     ggcgaattta ggaaactgcg ggaaactcta ggtcgagggc tctgaaaagg atatccacca       300
     ttgctctgga tcattatcga gccaaatatt aagcaagata gacgtctgtc ggaagttcag       360
     aaaatttgta aagagtagaa agagttgtga aaagagtaga agatagtgga tagcgtgaat       420
     tatcggaagc atccaggtaa cagaccctcg acaagagccc ccgttcgtcc ccataattaa       480
     aacacacccc ccattcgtcc tccaaatacc cgcaggaccc ttggttttac ccttggtttt       540
     atccttagag tacccttagt gaccttggag taaccttggc cgttgccttg ccgtaggctg       600
     gagtgcgcgt agtagacccg aagaccttga ttggtcctac cgcctctaag tgcgctgcag       660
     tgctcgtccg ttacacccga gactgccaaa cgagcgagga agtgccttct gtcgcagctg       720
     tgcacgccat tttgttagca gcgacgctac accttcaagc caaggcccag taaggtgaag       780
     acaggaggaa ggaagtaagg agaggagccg cggtcgcagc ccaaccgagg agaggagcga       840
     accggcggcg acgaagcaag gtgtggtagc ggaacgaaga aggggccccg ccatcagaag       900
     aagagaagaa gaggaagtgg aaggtaggag ataggctgta aggaagtggg aggaataaag       960
     gtacctgtgt gcaagaaaaa ctaataaagt gggtttaagt gacgctcaat agtattcaag      1020
     cgttttcttg gtcgcggttt atcacgcgca tatgccgacc ctgaggcagt gtagaagggg      1080
     gtctcattga tgccggatag ggggctgccc cattagttac a                          1121
//
ID   Gypsy-276_AA-I repbase;    DNA;    INV; 6476 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-276_AA_;
KW   Gypsy-276_AA-LTR; Gypsy-276_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6476
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2654-2654 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5322-5801] - Integrase core
CC   'ATTGA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1165..2568
FT                 /product="Gypsy-276_AA-I_1p"
FT                 /translation="MNILDLEEKLKELLILESNLKKSIYKKFLHKTLLEKQ
FT                 RLNNQLYDYVQTGLINLEDSLSESKLTYFEKASRQAFLCVQQILNTKLAHT
FT                 KRTIPFKTLVSTIIILRRLKPEPIVLNIQENMANATEIIKIASSLIPQYDG
FT                 NGEKLNNITAALKALKTVVTAATEPVAIQIILSKLEGKARSAVGDSPVDIE
FT                 AIINNLTRKCKQSMSSDVVLAKLNATRQSGALNKFTSEIEELTSQLEAAYI
FT                 GDNIPLDTATKMANKAGIKALSNGLKSLNTQLIVKAGTFSTLNEAIGRAAE
FT                 NDQEETPSMKVLHYGQRGGMYSFNHDQRYRSFYQNNHRTNSEQRDNTSRFG
FT                 GYNQNFRGNNNSNSEQRDNTSRFRGYNSNSRGGNNSNWYRGNNNSNRGNGR
FT                 NYSLNYSNGHRDQHQERYNSNRHNPSHGRIYHATTQENDSPLQNNRNNECD
FT                 DRRETGPHNFLGGRADQIERSSQ"
FT   CDS           2610..6146
FT                 /product="Gypsy-276_AA-I_2p"
FT                 /translation="MSEGKVTLIIDSGADISLFKINKIKPDRFVSTANKIK
FT                 LTGITDKTVETLASTDTEIFFENGLKVKHTFQLVSKNFPIQTDGILGRDFL
FT                 TTNRCKIDYDSWLLHFDMGNKTISIPIEDNFNNGFILPQRSETIRKLSKRA
FT                 YPSDMVVHAQEIQTGIFVGNTIISKDEPYAKFINTTNEPAFINYDQINPII
FT                 EPFDNYHVLKTMQNTLTSTNRQEQIFNEIDLSDIPSFVQQDFKNLITNYAD
FT                 IFSLKDDKLSSNNFYSQDIHLTDNAPVYIPNYKQIHSQTDEIKKQIDKMLE
FT                 ENIIEPSISSYNSPILLVPKKSNNDNKKWRLVVDFRQLNKKILTDKFPLPR
FT                 IDSILDQLGRAKYFSTLDLMSGFHQIPLTPESKKYTAFSTQSGHYQYTRMP
FT                 FGLNISPNSFQRMMTIAMAGLTPEHAFIYIDDIIVIGCSVKHHISNLANVF
FT                 NRLKYYNLKLNPSKCKFFQTEVTYLGHKITDKGIYPDDSKFIAVEKFPVPT
FT                 NVDDVRRFVAFCNYYRKFVPKFAGIAKPLNDLLKKNVKFEWSDKCQKAFEE
FT                 LKAHLLSPQILRYPDFSKEFTITTDASNVACGAVLSQNFDGNDLPIAYASK
FT                 TFNSAESRKHTIYQEMIAIHWAINYFKAYVYGRKFKIKTDHRPLVYLFGMK
FT                 EPTKKLTQMRLDLEDYNFEIEYIKGRNNVGADALSRIAITSDELKQMSILK
FT                 VNTRSMTGTKTKEPKSDDLTGAQLSIYETDSPSKTYKLPKIRTTINSFKEI
FT                 TIIITDPKESKEIYAITADGTQTLESVCLRLNDMLQKMKINKLAMSTQNEI
FT                 FTILPVELFKRIAIKTLKNVEILLHKPRRKIENSEDIQKILHDYHVTPIGG
FT                 HIGQTRLYKKLRDKYDWKGMKKTVNRFIENCRYCRINKVYKHTKEPNIVTT
FT                 TPAKPFDVISIDTVGPLPRTNSSNRYCITIQCDLTKYVVIIPVSNKEASTI
FT                 AKALVEHFILIYGNFLELKSDQGTEYKNEVLNQIGKILKFKQNFATAYHPQ
FT                 TIGALERNHRCLNEYLRSFSNEHHDDWDEWIKFYSFVYNTTTHTDTDYTPF
FT                 ELVFGRKPNLPQDIFKPKIDPVYNLEQYCNELKYKLQKSHLVAKENLIREK
FT                 QKRLQSSNKYTNSIKLSEGDLVYITNENRKKLDPHYIGPFKVKNVQAQNCK
FT                 LQELNSRKLIIVHKNRIIKM"
XX
SQ   Sequence 6476 BP; 2510 A; 1161 C; 1118 G; 1687 T; 0 other;
     atgttcggat agttttgtga atttcttgtg aagaattaag gtgaagtgaa aacacgtaga        60
     agcccgaact gaaccgaaac caagtgaaaa tgtggttgtg tgcagtgacc atagtgatcc       120
     tactactggt agcatatcag ttgtttctgt ttataaaaca ggaattcaca ggaatagtcc       180
     tgttgaaata ataacccagt gaccacctga aaaaaaaaag tgaaattgac acatgtgaac       240
     ttggtgaaaa atatttaaaa atggggtcag aagaatcgaa ggctcatgtc gagcataacg       300
     gagatagccg tatcgaaata gtgaatgtgc aaagcgaaca cactacaaaa tttaacgaac       360
     aaaaagtgat attacaaatc atactagtag tggtagcaat ccaactctgt atgacgacat       420
     accgcgaaat taaagggtat atgaacagga aggcctcgaa aaaggcagaa gaactactta       480
     gtgttgtctc caaaaagtga acaataaaaa caaacagtgc atccaacggc tgattataaa       540
     gctaaagtga agaaggcgtc tacctcgcca taagaaggta tacagtgaag aaaaaaaaca       600
     atatgtcaga aatagcaact atcatcataa ccctcaggag aggcatagca gagaagaaac       660
     ctgtgaagat aacaactcat acgaaggcag gaaaacaatt tgtaaacatt ttacaacgtg       720
     agcaaagaat aaaaaacgtg aacaaaaaac aagcactttt ccaatcttca atgtgtgaca       780
     tcaccagcgt ggaccgaaca ccggtaggag ttaacgaaat tctattttac gcaagtgaac       840
     agctacctag tgttacgggc agcctagtta tatcaacaca ccgaggaata atgacgcact       900
     taagcgcagt ggagaaaaat ttgggtggac gtataatcgc ccgaatcttc tgaaaatcca       960
     gcagcgaagt aaaaatccag cagttttacc taaggattac gacatcagca gaatcatcga      1020
     gataatctac ggtgaagtgg tgagagattt ttttttaacg gatgtgaatg tctttttttt      1080
     tataaactgt atattcttta agcttactat gtcattcttg gtgttataga caaatgaata      1140
     caataactac agtcaataca gaatatgaac atcttggacc ttgaagaaaa gttaaaagaa      1200
     ttattaattc tagaatcaaa cttaaaaaaa tccatctata aaaaatttct gcataaaact      1260
     ttgctcgaga agcaaaggtt aaacaaccaa ctatatgatt atgtacaaac aggattaata      1320
     aacttagaag attctctatc agaatcaaaa ttgacttatt ttgaaaaggc ttcaagacag      1380
     gcttttctgt gtgtccaaca aatcttgaac accaaattgg cgcacacaaa acgaaccatt      1440
     ccttttaaaa cattagtatc taccattatc attttaagac gcttaaaacc cgaaccaatc      1500
     gtactaaata tacaagaaaa catggcaaat gccacggaaa taataaaaat tgcctcgtcc      1560
     ctcatacccc agtatgatgg gaacggcgag aagcttaaca acataaccgc ggcgttaaaa      1620
     gcgttaaaaa ctgttgttac agccgcaacg gaacctgttg caatacagat tatcttatca      1680
     aaattagagg gaaaagcaag atcagcggtt ggagattcac ccgttgatat cgaggcgatc      1740
     atcaataatt tgactcggaa atgcaaacag tctatgtcat cagatgtagt gctagcaaaa      1800
     ctaaacgcaa cccgacaaag tggggcgctg aataagttca ctagtgagat agaggaactc      1860
     actagccaac ttgaggcagc ctacatagga gataatatcc cattggacac agcaacgaag      1920
     atggcaaata aggctggaat caaagcctta tccaacggct tgaaaagttt gaacactcaa      1980
     ttaattgtga aagcaggcac atttagtaca ctaaatgagg ccataggaag agcagcggaa      2040
     aacgaccagg aggaaacacc gtcaatgaaa gttttgcatt acggacaaag aggaggaatg      2100
     tactccttta atcatgacca acggtataga tccttctacc agaacaatca tcgaacaaat      2160
     tcagaacaaa gagataacac ctcgcggttt ggaggttaca accaaaattt tcgaggaaat      2220
     aacaactcga attcagaaca aagagacaat acctcgcggt ttcgaggata caactcaaat      2280
     tcccgaggtg gtaacaactc aaattggtac agaggtaata acaattccaa tcgaggaaat      2340
     ggcagaaact atagtttaaa ctatagcaat ggccatcgag atcaacacca ggaacgatac      2400
     aacagtaaca gacataaccc aagtcatggt aggatctatc atgctacgac acaagagaac      2460
     gattctcctc ttcaaaacaa tcgcaataat gaatgcgatg acagacgcga aaccggacca      2520
     cataattttt taggagggag agcagaccag atcgaacggt cctctcaata aatttgaatg      2580
     cttctaattt cgtttctgtt ggtactgaga tgtccgaagg taaagttact ttgattatag      2640
     acagtggagc agacatttca ttatttaaaa tcaacaaaat taaaccagac agattcgtga      2700
     gcacagctaa caaaatcaaa ttaacgggaa ttacagataa aaccgtcgaa acgcttgctt      2760
     ccacggatac agaaatattt ttcgaaaatg gattaaaggt aaaacatact tttcaattag      2820
     tttcaaagaa ttttccaata caaacagatg gtattctagg gcgcgatttt ctcactacca      2880
     acaggtgcaa aatagattac gattcttggt tattacattt tgacatggga aataaaacaa      2940
     tttccatacc tattgaagac aattttaata atggctttat acttcctcaa agaagtgaaa      3000
     ccattcgtaa attatcaaaa agagcttatc caagtgacat ggttgtacac gctcaagaaa      3060
     tccaaactgg aatttttgtt ggtaatacaa tcatttccaa ggacgaacca tatgcaaaat      3120
     ttatcaacac tacaaatgaa ccagctttta taaactatga tcagattaat cctattatag      3180
     agccttttga caattatcat gtcctgaaaa ctatgcagaa tacacttaca agcaccaatc      3240
     gtcaagaaca aatttttaat gaaattgatc tttcggatat acctagcttt gtacaacaag      3300
     attttaaaaa tttgatcacg aactatgcag acatctttag tttaaaggat gataaactct      3360
     cttcaaataa tttttatagt caagacattc atcttaccga taatgcccct gtatatatac      3420
     caaattacaa gcaaattcac tcacaaacag atgaaattaa aaaacaaatt gataaaatgc      3480
     ttgaagaaaa tataattgaa ccttctattt cgtcatataa ttcaccaatt ttactagtcc      3540
     cgaaaaaatc aaataatgac aataaaaaat ggagattggt tgtcgatttt cggcaactga      3600
     acaaaaaaat tttgacagat aaattcccct tgccaagaat tgattcaatt ctggatcaac      3660
     ttggtcgagc aaaatacttc agtactcttg acctcatgtc aggatttcac caaattcctc      3720
     ttacaccaga gtccaaaaaa tacacagctt tttcaacaca atcaggtcat tatcagtata      3780
     cgcgaatgcc atttggacta aatatcagcc caaatagttt tcagcgtatg atgacaatag      3840
     ccatggcagg gttaacccct gaacacgcat ttatttatat tgatgacatt attgtgatag      3900
     gatgttctgt aaaacatcac atttcaaatt tagcaaacgt ttttaatcgc ctcaaatact      3960
     acaacttaaa attaaatcca agtaaatgta aatttttcca gaccgaagtt acatatttag      4020
     gtcataaaat taccgataag ggtatctacc ctgatgattc aaagtttata gcagtggaaa      4080
     aatttccagt tccaacaaat gttgatgacg ttcgcagatt tgtcgccttt tgcaattact      4140
     ataggaaatt cgtaccaaaa ttcgcaggca tagcaaagcc attaaacgat ctacttaaaa      4200
     agaatgttaa gttcgaatgg tctgataaat gtcaaaaagc ctttgaagaa ttaaaagctc      4260
     atctattatc accacaaatt ttaagatatc cagatttctc gaaagaattt accattacaa      4320
     cggatgcttc taatgtagcg tgcggtgcag tgttatctca aaacttcgat ggtaatgact      4380
     taccaatcgc ttacgccagt aagacgttca acagcgctga gtcaagaaaa catactattt      4440
     atcaggaaat gattgccatt cattgggcga ttaactattt taaagcttac gtatacggca      4500
     gaaaattcaa aattaaaaca gatcacagac cgctcgtcta tctttttgga atgaaagaac      4560
     ctacaaaaaa gcttacacaa atgcgtctgg atctagaaga ttacaatttt gaaattgaat      4620
     acatcaaagg cagaaacaac gttggagctg atgcactctc cagaatagca atcacgtcag      4680
     acgaattgaa gcagatgtca attttaaagg taaacactag atcaatgact ggaacgaaga      4740
     cgaaggaacc aaaatcagat gatttgacag gtgcgcaact gtcaatctac gaaacggatt      4800
     caccttcaaa aacctacaag ttaccaaaaa tacgcacaac gataaattca ttcaaagaaa      4860
     tcacaattat cataacggat ccaaaagaaa gtaaagaaat atatgcaatc acagccgatg      4920
     gaactcagac gctagagtca gtttgtctaa ggttgaatga tatgcttcag aaaatgaaaa      4980
     taaacaagct tgcaatgtcg acacaaaatg aaatattcac aattctacca gtagaattgt      5040
     ttaaaaggat cgcgataaaa acgctaaaga acgtggaaat attattacat aaaccacgca      5100
     gaaaaattga aaattcagag gatattcaga aaatactgca tgattatcat gtaacaccta      5160
     tcggagggca tattgggcaa acccgattat acaaaaaact acgagacaaa tatgattgga      5220
     agggtatgaa aaaaacagtt aaccgattca tcgagaactg cagatattgt agaatcaaca      5280
     aagtgtacaa gcataccaag gaaccaaaca tagtaaccac taccccagct aaaccatttg      5340
     atgtgatatc aattgataca gtaggacctt taccaagaac caacagtagc aatcgatatt      5400
     gcataactat acagtgtgat ttaacaaaat atgttgtcat aatacctgta tcaaataaag      5460
     aagcttcgac catagcaaaa gctttggttg aacattttat acttatttat ggaaactttc      5520
     ttgaactcaa atcggaccaa ggaacagaat ataagaacga agtactgaat caaattggaa      5580
     aaatactaaa attcaagcag aactttgcta cggcatatca tccgcaaaca ataggtgcgt      5640
     tagaaagaaa tcatagatgt ctcaatgagt atctacgatc tttttcaaac gaacaccatg      5700
     atgattggga tgaatggata aaattttatt cattcgttta taacaccacc acacataccg      5760
     atactgatta tacacctttt gagcttgtat tcgggagaaa acctaactta ccacaagata      5820
     tttttaaacc caaaattgat ccagtatata atttagagca atattgtaat gagttaaaat      5880
     ataaactcca aaaatcccat ctggtagcaa aagaaaacct aattagagaa aaacaaaaaa      5940
     gattgcaaag ttcaaataaa tatacaaact cgatcaaatt atccgaagga gatttagtat      6000
     acataacgaa tgaaaatagg aaaaagttgg accctcacta tattggacca tttaaagtaa      6060
     agaatgtaca ggcacaaaat tgtaagttgc aagaattgaa ttcgagaaag ttgattattg      6120
     tacataaaaa cagaataata aagatgtaaa atttgttttt aacttataaa tgtagactaa      6180
     gttaatgtag cgccggagca ttcaacaggc agcgtttgaa atttggatgt tttagacttt      6240
     taagttaagg ctatgaaata aaatacgtaa aaaaaaaaaa aaaaaatata ccgaacaaaa      6300
     aaaaaatttt tttttaagct gcttatatgc attataaaat attgtaaaac ccgaaatatt      6360
     gtaaaatttt atctcaaagg catctgggac aggcaaccgc aagaatgatt ccatttcatt      6420
     ttcttttcca ttacatcatt ctctcaaagg gggaaggtgt gctatgcacg cattga          6476
//
ID   Gypsy-276_AA-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-276_AA_;
KW   Gypsy-276_AA-I; Gypsy-276_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-478
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2655-2655 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 478 BP; 130 A; 125 C; 97 G; 126 T; 0 other;
     tgcaaagcat acttcttcat taattagtca cagacccaca tgggcacaaa cgaataccac        60
     ggcgaagcac gcattagcag cttgtaccga ggcactcgaa cggtgcgcat gttttgctga       120
     ttctactgtt tgagtccgtt tatgtttaca tacaaaagcg gcaattgcca aaatatcgtc       180
     accgccgtcc caggcgtctt tatctatcca ttaagttcaa ttaattgaca ttttccaaat       240
     aaaagggaca gaggttccac caccagggca gtcttgttct ggccttcgac tcacttgttt       300
     cactgcattc taaatgcata ctgaacgtcc ctgtagcact ctggttccca gatactgctt       360
     atgatctgag gttggcaaca agaaagcaac tctaagggct aaaagaccga agtctttaac       420
     cccctactgt tagtccccgg acggactttc agatggcgac cggactttcg aacacgca         478
//
ID   Gypsy-277_AA-I repbase;    DNA;    INV; 3927 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-277_AA_;
KW   Gypsy-277_AA-LTR; Gypsy-277_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3927
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2656-2656 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3038-3550] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           821..3583
FT                 /product="Gypsy-277_AA-I_1p"
FT                 /translation="MPQSMQLSSDKKLGNRPPTVNEVGGNQLSRRLRIFDR
FT                 TSHIRFLIDTGSDVSIIPASTREKLHGPSAFQLHAANGSTIKTYGNRFVTT
FT                 DLGLRRRFAWNFLVADVTTAIIGADFLAYFGILVDLGTNRLIDGKTKLHST
FT                 GGIAQATVHGVTTIDFNHPFRDLLIEYREITTPPTMRSEIQHNVTHHIQTK
FT                 GPPVACKPRRMAPDKLRAAKKEFEMMSEIGICRPSKSCWASPLHCVRKKNG
FT                 EWRFVGDYRSLNRVTIPDRYPVPHIHDLLNNFLGKKYFTTLDMVRAYYNVP
FT                 VEECDIPKTAVITPFGLFEFTRMQFGLCNASQSFQRFMHSIFGDLDFVIVF
FT                 VDDICVASATEEEHQLHVRIVFDRLRKNGLVLNLTKCKFAQTEVDFLGYRV
FT                 NAEGVKPEPERVSAVTEYTQPNTVKELRRFLALVNGYKRFLPGAAEIQKVL
FT                 QEMINGNRKNDTRKLKWDSATKAAFEKCKQSLAKATLLHYPDSSKPLALMV
FT                 DASDIAAGAVLQQYSNGIWQPLGFFSQKFSASQKKYSVFGRELTAMKLAVK
FT                 YFRHLIEGKNFTIFTDHRPLTYALDSNSTHLPHEERYLQYISSFTRSIKHI
FT                 SGKDNFVADALSRVNLIALPSVLNFEDVAVDQTTDSELQKLLTSKTSSLRL
FT                 EAKSIGQSSKQIYCDISGPGQPRPFIPKLHRSSIMHAIHDLSHPGIRTTRK
FT                 LVSSKFVWPSMNKDVSQFVRSCDRCQRSKINRHTQAAYGNFDVPRGRFSHV
FT                 HIDLVGPLPPSNGHRYLLTMVDRFSRWPEAVPLPDMLAETVAKAFCNTWVS
FT                 RFGVPETISTDQGRQFESQLFHELTSWLGTTRSRTTAYHPQANGLVERFHR
FT                 TLKSAIMCVDPLHWSDKLPMILLGLRTAIRDDSNCSVAEMVYGQPLRIPGD
FT                 FLEHSTTEVDRSDLIKS"
XX
SQ   Sequence 3927 BP; 1132 A; 957 C; 873 G; 964 T; 1 other;
     tattggtgac cgccgacggt gaaagtatcg aattcgcgtt aaatacggag tgaaaacaag        60
     tgctaaacat gaccgaaaat cagcagctac aaatcgtcaa caatcagcca cagccagcag       120
     cagccgctgc agttgctgtc aaattgccgg aattttggaa gtcggacccg gcaatgtggt       180
     tcgcacaggc ggaggcacaa tttgccttgg ccggaatcac acaggacgtc acgatgtttc       240
     accacattgt ggcaaaaatt gatcagtccg tgatatgcca cgtcacggat ctggtgaaaa       300
     atcctccggc tgctgacaag tatgctgcca ttaaacttcg actaatttcc cgctttgaat       360
     tgacgccaca gtcacgcctc gaacgtctac tgaacacttg cgatcttggc gatttacggc       420
     caactcattt gttggcaaag atgcaggagc tatcagcagg cttgaacgta gatgaatctc       480
     tgctaaagat gctgtttcta caacgccttc cagccaacat ccgcgccgtc ttaagcatcc       540
     acgatggaac actggcaaaa attgcggaaa tgggtgacaa aatgatcgac ttgtccccac       600
     cagcagcagc tgccatcaat gttcgaccag caccatcgtc caacgaagat ccgtattcac       660
     aggagagtct ggcaaaccaa atcgcagcat tgaccgctga aatccgccag atgaaagcta       720
     aaccacaacg tcgctcccgg tcaacctctc ggaatcgtca agcatctggt gtaaataacg       780
     tatgctggta ccatcgcaag tttggcgata atgcagagca atgccgcagt ccatgcaatt       840
     atcaagcgac aaaaaactag gcaaccgccc acctacagtg aatgaggtgg gcggaaacca       900
     gttgagccgc cgtcttcgca tttttgatcg cacttcccat atccgatttc tcatagacac       960
     aggatcggat gtttcgatta ttccagcaag taccagagaa aaactccacg gcccctccgc      1020
     cttccagcta cacgctgcaa atggatccac gatcaaaacg tacggaaatc gttttgttac      1080
     cacggatcta gggctgcgtc gccgattcgc atggaatttc ctagtcgccg atgtaaccac      1140
     tgctataatt ggtgccgatt ttttggccta tttcggcatt ctagtagacc tcggaaccaa      1200
     tcggcttatt gacgggaaaa cgaaactgca ttccactggc ggaattgcac aagccacggt      1260
     acatggtgtg accacgatcg atttcaatca tccttttcgc gatttgctga ttgaataccg      1320
     cgagattacc acaccaccaa ctatgcgatc cgaaattcaa cacaatgtga cccatcacat      1380
     ccaaacgaaa ggtcctccgg tggcttgtaa accacgcaga atggcgccag ataaactgag      1440
     ggcggcaaaa aaggagttcg agatgatgtc ggagattgga atatgccgtc catcgaaaag      1500
     ctgttgggcg agtcccttgc actgcgtccg taaaaagaat ggagagtggc gtttcgtggg      1560
     ggactaccga agcttgaatc gtgtcactat tcccgatcgg tatccggttc ctcacatcca      1620
     tgacctttta aacaattttt tgggtaaaaa gtacttcaca accctggaca tggtacgagc      1680
     ttattacaat gttccagttg aagaatgtga tataccaaaa acagccgtga ttaccccatt      1740
     tggactgttc gaatttacga gaatgcaatt cgggctatgc aacgccagcc agtccttcca      1800
     acgattcatg catagcatct tcggagattt ggactttgta attgtttttg tcgacgatat      1860
     ttgcgttgct tccgctaccg aagaggagca tcaactgcac gttcggatag tcttcgatcg      1920
     attacggaaa aatggactcg tgttgaatct caccaaatgc aaatttgcac aaacggaagt      1980
     agatttcttg ggataccgtg tgaatgcaga aggtgtgaaa ccagaaccag aaagggtgtc      2040
     tgcagttact gaatacactc aacccaacac agttaaggaa ttaaggcgtt tcctagctct      2100
     ggtgaacggc tacaagcgtt ttcttcctgg tgccgctgaa atacaaaaag ttctacaaga      2160
     aatgatcaac gggaatcgca aaaatgatac acgaaagttg aaatgggact cagcaacaaa      2220
     agcggcgttc gagaaatgta aacaaagcct ggcaaaagcg acattattgc attacccgga      2280
     tagttcaaaa ccattggcat taatggtcga cgcttcagat atagctgcgg gggcggtact      2340
     acagcagtac tccaatggca tttggcaacc tctaggcttc ttctcgcaaa aattttccgc      2400
     ttctcaaaag aaatattcag tttttggtcg agagctgacg gcgatgaaac tcgccgtgaa      2460
     atatttccgc catctgattg aaggtaagaa tttcactatt ttcaccgacc accgacctct      2520
     cacttatgct cttgactcaa actccacaca cttgccccat gaagaacgtt acttgcagta      2580
     tatctcaagc tttacaaggt ctattaaaca cataagtgga aaggacaatt ttgtggcaga      2640
     tgccctatct agagtgaact taatagctct accatccgtt ttgaacttcg aagatgtcgc      2700
     tgtagaccaa acgacagact cggaattgca aaaactgcta acgagcaaaa catcctcact      2760
     tcgattagaa gccaagagca tcggccagtc atctaagcaa atatattgcg atatttcagg      2820
     acccggacaa ccacgaccat ttattccgaa acttcatcgt tcgagtatca tgcatgctat      2880
     acacgatttg tctcatcctg gaattcgtac aactcggaag ctcgtatcct ccaagttcgt      2940
     gtggccatcg atgaacaagg atgtttccca attcgttaga tcgtgcgacc gatgccagcg      3000
     ctccaaaatc aaccgtcaca ctcaagcagc ctacgggaat ttcgatgttc ctcgtggaag      3060
     gtttagtcat gttcatatcg acctggttgg acctctacca ccttctaatg gacatcgata      3120
     tctcctcact atggtagaca ggtttagtcg ttggcctgaa gcagtaccgc tgccggacat      3180
     gttagccgaa accgtagcaa aagccttttg caatacatgg gtgtcacgtt tcggcgttcc      3240
     tgaaacaata agtactgatc aaggtcggca attcgagtcg caattgttcc acgaattgac      3300
     ttcatggctc ggaacgacac gtagccgcac cactgcttat catccacaag caaatggact      3360
     agtggagcga ttccatcgca ctctgaagtc agcaatcatg tgtgttgatc cactgcattg      3420
     gagtgataag ctacctatga ttttgctcgg actacgcacc gctattcgag acgattcgaa      3480
     ctgttccgta gctgaaatgg tttatggaca acctctccgt attcctggcg attttcttga      3540
     gcacagtaca actgaagttg accgttcgga tttaattaaa tcgnttcgcg atgtggtaca      3600
     aaatctaaaa ccgattgaga gagtcaacca ctcaaagcaa cgtgtatttg taccaaatga      3660
     tcttcaaagc tgtaaaggag tttttgtcag aatcgacaca gttaagaaac cattacaaca      3720
     cccctatgaa ggacccttcg aggtaattga acggggagat aagaacatgg ttatattgat      3780
     gaaagggaag aagcaacggg tatctatcga caggctcaag ccagcatact cgtgtaatca      3840
     acaactagat tcctgctcag acacaaagac gaaagttacg ccatcaggcc atcgcgttag      3900
     attcttggca taactggtgg agggtag                                          3927
//
ID   Gypsy-277_AA-LTR repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-277_AA_;
KW   Gypsy-277_AA-I; Gypsy-277_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-139
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2657-2657 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 139 BP; 35 A; 33 C; 30 G; 41 T; 0 other;
     tgtggtggca acactgccac cgttgatgta tgaaatcagt tagagtgacg caataaacgt        60
     gtcgtgttgt tattctgtac tcgtcgcagt ctttattatc tttaccgtcc gaagtaatcc       120
     ggaaccaccg aaatcccca                                                    139
//
ID   Gypsy-278_AA-I repbase;    DNA;    INV; 6651 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-278_AA_;
KW   Gypsy-278_AA-LTR; Gypsy-278_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6651
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2658-2658 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5526-6005] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1762..2742
FT                 /product="Gypsy-278_AA-I_1p"
FT                 /translation="MALNIKTASELASLIPSYDGNPGGVKSFIDAIRLVQT
FT                 IVPADQQAPAIQLILTRLTGKARDLFTGVPANYQEIVDKISADCTDKSSSE
FT                 LALANLKNIKPKKGQETSGFTKEVDILADKLKQAYIREEVPNEVAKKLANK
FT                 AAIQSLIIASQKQETKMLLKVGKFDSLSEALNIVVENENFNNEPSVSMLQM
FT                 RKKFPQNKPSYQSNYQNRNNGNNSRGNFRGFTRNNTRQTTPNFPQQSSNRF
FT                 LRYNYQNTNHQHPRQQNWNHSGNRRLYHMNEVDGSMLSSQFAPNGALPQPV
FT                 SMVPSNMMPPQRQHQQPQQVPNHFLGTTGLFPYSR"
FT   CDS           2742..6356
FT                 /product="Gypsy-278_AA-I_2p"
FT                 /translation="MNLNASNFISVNVQMTNTTNTFIIDCGADISIFKRSK
FT                 IHPSYLINITEKIKLTGITDDTVETIASAVTDLYFEGGLCIKHKFHLVNDE
FT                 FPIMTDGILGRDFLSSHRCIIDYESWLLKFNVNNEEITIPIQDNLNNGFIL
FT                 PKRSEVIRRIINIPYTYDMVVHSQEILPGVFCGNTIISSNNPYVKFINTTE
FT                 NPVHILYSRFQPIMEPLYNYHIMKINSSIKNKKNRQQDILNQIKTIGIPLD
FT                 AVKGLQNLIAEYHDIFSLPDDVLTFNNFYTQEIPLQDNCPIYIPNYKNLHA
FT                 QTNEIQRQVDKMLGENIIEHSVSPYNSPILLVPKKSDTNDKKWRLVVDFRQ
FT                 LNKKILADKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIPLDENSRKFTA
FT                 FSTQSGHYHFTRLPFGLNISPNSFQRMMTIAMAGLTPELAFIYIDDIIVIG
FT                 CSVNHHLMNLTQVFDRLRHYNLKLNLSKCKFFQSEVTYLGHKITDKGILPD
FT                 PSKFDTIKNYPVPSNADDVRRFVAFCNYYRKFVPNFAKIASPLNNLLKKNS
FT                 KFMWTDECQYSFESLRNYLMSPMILQYPDFNKQFILTTDASDIACGAVLSQ
FT                 QFENSELPIAFASKTFTKGEKNKPVILKELTAIHWAINYFKPYLYGKKFVV
FT                 RTDHRPLVFLFGMKNPNSKLTNMRLDLEEFDFVVEYIQGKANVIADALSRI
FT                 VTTSEELKNINILKVNTRAMTREQNQTTTPAETPKVTVSKEPDHLSTYVTE
FT                 NPSITNKLHKLRISYDNNVLEMIIFSKNSKKRVASVQQQFIRNGSQTLEFA
FT                 LLKLEKLLLTMKIKKIALSSDNELFKLWPINIFKKITNEKVRHVQIIIYNP
FT                 PKFITDKNEIHEIIRINHETPLGGHIGQHRLYLKIREKYKWKDMKGCISQF
FT                 VKSCELCKKNKITKHTKENMIVTTTPSRPFEVISIDTVGPLPLSNNKNRYI
FT                 VTIQCDLTKYVVLIPTASKEANVIAKALVDHFILVYGNFLELRSDQGTEFK
FT                 NQTLEQICKILEIKQNFSTAYHPQTIGSLERNHRCLNEYLRSFTNEHHTDW
FT                 DDWLKFYSFSYNTTPHSDHQFTPFELVFGRKAQLPNEIYEKGIEPLYNYED
FT                 YYHELKFKIQKSNEIARRKLIDQKLIRTNQANQNINPINLNIGDLVYLTVE
FT                 NRKKLDSFYSGPYKIVEINDPNCKINHYLTQNNENITVHKNRLIKA"
XX
SQ   Sequence 6651 BP; 2594 A; 1111 C; 1057 G; 1886 T; 3 other;
     agtctaaaat ttaatacggt aaaattaata cggtaaatgg cgaccggtga ctttcgaatc        60
     tttcggagtc cgaagtggat tattattgat caccaactag atgatctagt gattgatttt       120
     gcatgaagca aacaagtgaa aaaacaaaac aaaaatcgga agtttttcaa acagtgctag       180
     tgagattcaa gtgataagtg agattcaatt atgggaaaag gcgcatcaaa gtcgtccaac       240
     gaaggcgacg caaatgttca aataactaat ctcctagaaa accatcaaca gttccatgag       300
     gaaaatgcat taaagttgtg gctaattttg gtgatggttg gtatccaaac agtgataatg       360
     gtttacaaca tgataaagaa gaacactcga aaaaatgcac tcaaagcagc taagagtatt       420
     gctgtactgg aaaaagtttg agtaagaaat caagtgcagt gaataaaaat aaacatttta       480
     aatcattcga taaaaataaa ctgaacaatt gtaacgagat ccagtaaagt gaacaaaata       540
     atcttcaaat tgtgcggaaa atcagaatcg cgtgacacaa gaaaatcccg cggtgcagtg       600
     aatcgaaaac gaaaattaat tatccacggg cgaaccggca acttggagcc gccccaacaa       660
     agggcaaacc ggcaacatgg agctgcccct acgaagatga gaacgtacag ttagaacaac       720
     atcaacaagc agcagcagtg accgaggtgc aacgatcgtg ccagagccag gaacatggcg       780
     atgagcagaa ttacccgtag gaagacaact attggtgagc gtatcaaatc cgtaattgat       840
     tactaacatt aattaataat tttcatatgt gaattgtgca ttgtaaatct acttttataa       900
     ttatattgga aaataacaga agaatgaata ttccccatta agaaataata tgttatgatt       960
     tatatggtga acataaatga aagtttatgc ctttattagt aaatttcatt tggtattgat      1020
     atttttctta actatatgaa ttataattaa aattttaaaa tgaatgacat tgaatgggaa      1080
     gattttctca aatttttaaa tgaagttgaa aagggtaatg gtccagaacc atttgcacct      1140
     tttgaaagaa acacaacccc ccgtacgtgg gaagaattga tagcaagaat tgaaaatttg      1200
     ccaggagacg atccaatcac atggttgccc ctgagcgaaa aaccataaaa gaaaaatttt      1260
     attttttttt attatgcaat taaccttatg atcaacttta aaagttttca atgagtggaa      1320
     ttgaattaga aatacaaaat ttaattggaa aactacataa tattaaaaca aacttaaaaa      1380
     aatctccttt tagaagatac cttaaaagta ctctaaagga caaaattctt ttaactggaa      1440
     aaccacataa tattaaaaca aacttaaagt cgtanaanct cctttgaaat atgaagatgc      1500
     cttagaagta ctctaaagga taaaattctt ttaactaaaa ccatatacaa taaagtcgta      1560
     caaactcttt tgaaatatga agatgtttta gataatagac atgttgattt ctttataaaa      1620
     gcagcacgtc ttgattatga tgaaataatt tatatactag aaacaaaact taagaaatat      1680
     tcaaaaccaa tatcattaaa atcacttagt tacgcaataa tattcaatat tagactgatc      1740
     aagatttcaa aaaaagttaa aatggcattg aacataaaaa cagcatctga attagcatca      1800
     ctgattccct cttacgatgg aaatccagga ggtgtaaaat catttattga tgctatcaga      1860
     ttggtgcaaa ctatagtgcc agcagatcag caagcccctg ccattcagct cattttgact      1920
     aggttgactg gtaaggccag agatttgttt actggcgttc cggctaatta ccaagaaatt      1980
     gtggataaaa tttctgctga ctgcactgac aaaagcagtt cagaattagc tctcgctaac      2040
     ttgaaaaata ttaaaccaaa aaaaggccaa gaaacttctg ggtttaccaa ggaagtagac      2100
     atactagcag ataaattgaa acaagcttac attagagaag aagtacctaa tgaagtagca      2160
     aaaaaattag caaacaaggc tgccattcaa tccttgatta tcgcatcaca gaagcaggaa      2220
     acaaaaatgc ttttgaaagt tggaaaattt gattcgcttt ctgaggcatt gaatatcgtt      2280
     gtggaaaacg agaattttaa caacgaacca tctgtgtcaa tgttacagat gagaaagaaa      2340
     tttcctcaaa ataagccaag ttatcaatca aattatcaaa atcgcaacaa tggcaacaac      2400
     tctagaggta attttagagg tttcacacgt aataatacgc gtcaaaccac accaaatttt      2460
     cctcaacaat catcaaacag atttttaaga tacaattacc aaaataccaa tcatcaacat      2520
     ccaagacaac aaaactggaa ccattccggt aatagacgat tatatcatat gaatgaggta      2580
     gatggttcaa tgctttccag tcaatttgcg ccaaacggtg cattgcctca accggtaagt      2640
     atggtgccaa gtaacatgat gccaccgcaa aggcaacacc aacaacctca acaagttcca      2700
     aatcattttt taggaacaac aggtctgttc ccgtactcac gatgaatctg aacgcgtcca      2760
     atttcatatc ggtcaatgtt cagatgacaa acactacaaa cacattcata atagattgtg      2820
     gagcagacat atctattttc aaacgtagca aaatacaccc cagctatcta ataaatataa      2880
     cggagaagat caagttaaca ggtatcactg atgacacggt tgaaaccatc gcgtcagcag      2940
     taactgacct atattttgaa ggaggactgt gcatcaagca taaattccac cttgtaaatg      3000
     atgaattccc tattatgaca gacggcattt taggccgcga tttcttaagt tcccatagat      3060
     gcataattga ttatgagtct tggttactta agtttaatgt aaataatgaa gaaataacta      3120
     taccaattca agacaactta aacaatggct ttatcttacc gaaaagaagt gaagtcatta      3180
     ggcgaattat aaatattcca tatacatacg atatggttgt gcattcacag gaaatattgc      3240
     caggcgtttt ctgtggaaat actatcatat catctaataa cccttatgtt aaatttatca      3300
     acactacaga aaatcctgta catatattgt attcacgatt ccaacctata atggaaccac      3360
     tctataatta ccatataatg aaaattaata gtagtattaa aaataagaag aatcgtcagc      3420
     aagacattct gaatcaaatt aaaactattg gaataccttt agatgcagta aaaggtttac      3480
     agaacctcat tgcagaatat cacgacattt ttagtttacc tgatgatgtt ttaaccttta      3540
     acaattttta tactcaggaa attcctctgc aggacaactg tccgatatat attccgaatt      3600
     acaaaaactt acatgcccaa accaatgaaa ttcagagaca agtggataag atgctgggtg      3660
     aaaacattat cgaacactca gtatccccat ataattctcc aattttgttg gtaccgaaaa      3720
     aatcggatac taatgacaag aaatggcgtt tagttgtcga ttttcgacag cttaacaaaa      3780
     aaatccttgc tgataaattt cctctcccca ggattgatac tattttggat caattgggaa      3840
     gagctaaata tttttccacg ttggacttga tgtctggttt tcatcaaatc ccactagatg      3900
     agaactcaag aaaattcaca gcgttttcaa cacagtctgg acattatcat tttacgcgtt      3960
     taccatttgg attaaatata agtccaaata gtttccagcg tatgatgaca atcgccatgg      4020
     ctggattgac acccgaatta gcttttattt atattgatga catcattgtg attggttgtt      4080
     cagtaaacca ccatctaatg aatcttacac aagtttttga cagattgaga cactataatt      4140
     taaaactcaa tctaagtaaa tgtaaatttt ttcaatcaga agtgacttat ctaggtcaca      4200
     aaataactga taaaggaata ttacctgatc cttctaaatt tgatacaatt aaaaattatc      4260
     cagttccatc caatgcggat gatgttagac gatttgtagc tttctgcaat tactacagga      4320
     aatttgttcc aaactttgca aaaattgcta gtcctttgaa taatttactt aagaaaaatt      4380
     caaaatttat gtggacggat gaatgtcaat attcattcga atcattacgc aattatttaa      4440
     tgtcaccaat gattcttcaa tatcctgatt ttaataaaca atttattttg acgacagatg      4500
     cttcagacat tgcttgtgga gcagtactgt ctcaacaatt tgaaaatagc gagctaccga      4560
     tagctttcgc aagtaaaacc tttacgaaag gagaaaaaaa taaaccagta attttgaaag      4620
     agttaacagc gatacattgg gctattaact actttaaacc ttatttgtat ggaaaaaagt      4680
     tcgttgtaag aacagaccat agaccgctag tattcctgtt tggaatgaaa aatccaaact      4740
     cgaaactcac aaatatgcgt ttagacttag aagaatttga ctttgtcgta gaatacatac      4800
     aaggcaaagc taatgtaatc gcagacgcac tgtcacgtat tgtcacaacg tctgaagaat      4860
     tgaaaaatat aaatattttg aaggttaata caagagcaat gacccgngaa caaaatcaaa      4920
     ctacaacacc cgcagaaaca ccaaaggtta ctgttagtaa agagcctgat cacctctcta      4980
     cttacgtaac tgaaaatcca agcattacca acaaattgca taagttaaga attagttatg      5040
     ataacaatgt tcttgaaatg ataatttttt caaagaacag taaaaaacgt gttgcatcag      5100
     tgcaacaaca gtttataaga aacggaagtc aaacacttga gtttgctctt ctgaaattag      5160
     agaaattatt acttacgatg aaaattaaaa agattgcttt atcttcggat aatgaacttt      5220
     tcaagttatg gcctataaat attttcaaaa aaataacaaa tgaaaaagtt agacacgtgc      5280
     aaataataat ttacaatccg ccaaaattca taacggataa aaatgaaata catgaaataa      5340
     ttagaattaa ccatgagacc ccattaggag gtcatattgg acaacataga ctttatctca      5400
     agataagaga aaaatataaa tggaaggata tgaaaggttg catatcacag ttcgtaaaat      5460
     cctgtgaatt atgtaaaaaa aataaaatta ctaaacatac taaagaaaat atgatagtta      5520
     ccacaacacc ttccagacca tttgaagtga tttcaattga tacagttgga ccacttccat      5580
     taagtaataa caaaaataga tacatagtta caatccaatg tgatttaacg aagtatgttg      5640
     ttttaatacc aacggcaagc aaagaagcta atgtcattgc caaggcatta gtcgatcatt      5700
     tcatattagt gtacggaaat ttccttgaat tgaggtcaga tcaaggaacc gaatttaaaa      5760
     atcaaacctt agaacaaatt tgcaaaattt tggaaattaa acaaaacttt tcaacggctt      5820
     atcatcccca aactattggt tcattagaga gaaatcacag atgtttgaat gaatatctga      5880
     gatcttttac aaatgaacac catacagatt gggatgattg gttaaaattt tacagttttt      5940
     cctataacac cactccacat tcagatcatc aatttacacc atttgaatta gtttttggca      6000
     gaaaagctca actacccaac gaaatatacg aaaaaggcat agaaccactt tataattacg      6060
     aggactatta tcatgaactt aaatttaaaa ttcagaaatc aaatgaaatc gctagaagaa      6120
     aattaattga tcaaaaatta atacgaacaa atcaagcaaa tcaaaatatc aacccaataa      6180
     atctaaatat tggagattta gtatatttaa ccgtagaaaa cagaaaaaaa cttgattcat      6240
     tttattcagg accttataaa atagtcgaaa tcaatgaccc aaattgtaaa attaatcact      6300
     atttgacaca aaataatgag aatattacag ttcacaaaaa tcgacttatt aaagcataaa      6360
     aataaaaaaa aaaaaaaaaa cacaaagttt tgatttaatt attgtatcga taactaacaa      6420
     taaattttaa tacaaaagag atccaccgag cctaacaccc ataaaaaaga gaataaaaca      6480
     caaaaaaaaa aatgacaatc aaatggggta ggtaaaattt cttagtataa cactaagaag      6540
     cttgaaattc gataggatca aataagtata ttttttatgt aaacggtatt tggagcatag      6600
     ctatacacga gtaatttttc ttcgatacat tactctcccg aagggtggag g               6651
//
ID   Gypsy-278_AA-LTR repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-278_AA_;
KW   Gypsy-278_AA-I; Gypsy-278_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-626
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2659-2659 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 626 BP; 228 A; 137 C; 79 G; 182 T; 0 other;
     tgtagcatga tagacttgca ttacaaagtt aatattcaaa aaacataaat aattcatctc        60
     aagcattaga acatgttcat gttccgatgt tcataaagaa tatcaaatta cagaacgttt       120
     cctagctctc acaaatcctt aagagtgtga aaagcataaa acagtaaaac taaatttcac       180
     atcaactgaa atgctgaacc ttcccacgat cataaaaacc ttacttcaca attcccaagc       240
     attcatatca tgctaacatt caaaccaaat tattgccaac cttttccaaa ttacaactca       300
     ggcaatgacc catgtcattg tcactacact ctgacgccaa cgatcattcc agacaatcga       360
     tatatgcaat agcgtaattc gatctccttg cctacgccaa gtgcatcgtt ctcacgatgc       420
     aagaggccaa tggttatatt tcttttcgct tataatgcat agcgctaaat tctgattggc       480
     ttatatttac ataccaaaag ttaactccaa gtaccgcctc ttttagaaca cttttagaac       540
     ataagcaatt caatgattgt aagacttctt gtaagtaaaa atgattctaa ataaagataa       600
     tcttgtagac aacggaacaa tcaaca                                            626
//
ID   Gypsy-279_AA-I repbase;    DNA;    INV; 4673 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-279_AA_;
KW   Gypsy-279_AA-LTR; Gypsy-279_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4673
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2660-2660 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3549-4007] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1974..4586
FT                 /product="Gypsy-279_AA-I_1p"
FT                 /translation="MKSADRVRLCGDYKVTVNKCILVDEHPLPTIDELFSN
FT                 MAGGKKFTKLDLAQAYLQMEVREEDRELLTLNTHLGLYQPTRLMYGVSSAP
FT                 AIFQREISQLLGDIPGVSVFLDDIKVTGSDNNTHLERLNMVLQRLDEHGLR
FT                 LNVAKCDFFADRIEYCGFVVDKEGIRKMQTKVDAIQEMPKPCNREQVRAFV
FT                 GLINYYGRFLKNLSTRIYPINNLLKENVSFKWDEDCDKAFQWIKREMQSDR
FT                 VLVHYDPKLPLVLATDASPYGVGAVLSHLYPDGTERPIHYASQTLNRSQQN
FT                 YIQVDKEAYAIIFGVKKFYQYLFGRRFTLVTDNKAVAQILAPHKGLPTLSA
FT                 LRMQHYAVFLESFDYEIRFRGSKENANADAMSRLPIEDVNNQHRIEEVDLV
FT                 EVNQIETLPVTAEELAECTKEDVNVKNLVQGLKVGRNVEGRDRFGINQSEF
FT                 SIQKGCLMRGIRVYIPSKLRRRVLEELHTGHFGVSRMKSLARSYCWWATID
FT                 HDIEELSRDCSECARVRKNPAKVVPHCWEKASEPFQRIHIDFAGPFLGLYY
FT                 FVIVDSYTKWPEVKIIPDMTTDTTINRLREYFVTYGVPSIIVSDRGVQFTS
FT                 DQFQAFLKRNNITHKMGAPYHPATNGQAERFVQTFKDKLKALKCERKDVQF
FT                 ELYKILMAYRRTVHPATGQSPSMLVFGRQMKSRLDLLVPACVPEESFRGGE
FT                 ESVRRFAINERVAVRDFLGSSKWKFGAVTERLGKLHYMIELDDGRIWKRHV
FT                 DQMRAGPMKEKAESDSWTEFFDRSRRDPTTSCTNQPSSFECSNDTLPRLLS
FT                 TAHQTPSMEPQPVAEEPANQPTTSSRPTVEKVLSETRVLPQVVDRSVQYRN
FT                 ETPRRSSRIRKPPKRLNL"
XX
SQ   Sequence 4673 BP; 1275 A; 1058 C; 1289 G; 1041 T; 10 other;
     gtttggcgac gataacggag aaaacctacg cgaaggacgg tggaaccgac ccgggacggt        60
     gaaagtccgc gttaccggaa gattgaccag gaaggccgat tccgaaggag aattgcatct       120
     acgaaggaga acgtgccatt tctaacctca ctagcgttac gaaagggggc actcccggac       180
     gacgacggtc gcggtcgaga cgacggtgtg atttgctgaa acaaatacac gtatagctgc       240
     gtacaaacga aaaacagtgt gtgtaccagc tgaagtgcga cgggaagttg ctgctgctgc       300
     aacgatcgat cgacgaccgc gtttgtgctg cttgctactg ctgacatcca acgtagacaa       360
     tgtcggacga tgaaagagac gatgctgcta gggccgccgg ggccgcggcc gccgccgccg       420
     ccaccgccgc cgccgctgct gctggtggtg atcctgccgc cgctgctgct gcttttccgc       480
     cacccgttgc gcctaatttc gccatggaac cattcgagaa ggagaacgga aagtgggcga       540
     gatgggtgaa acgtttggag ggcgggtttc ggatgtttgt tgtgccacca gatcgccata       600
     aagactacct cctacactat atggggccaa cgacgtacga tttactatgt gaccatatga       660
     gcccgatcga gccggagacg aaaacgtacg ccgagatcgt tactgctttg ggcgcatttt       720
     tcgacccgga gccgcttgaa atggtggaag tgtggaagtt tcgcaaccgc acacagaagg       780
     agggagaaac cgtaaaggaa ttcgtgacgg agctacaacg ggaagcgaag ttctgcaaat       840
     tcggcaatta cctgaagaac gagcnacgca accagctggt gttcgggttg cggtcgaaaa       900
     ggattcggtc gcgactaatc gaggagaaga acctgatatt tgagaaggcc ctggacattg       960
     cactctcgat ggaagcgtcg ggtgaaggag cggaggttct cgaaaagcga tcacacgacg      1020
     tgaactacac cgagcggcga tctttcaagg taactaacac tactaaaaag aaatgttatc      1080
     gatgtggaag tgaggcccac ttggcgagtg tatgtcgtca caaagagaca gtctgtgctt      1140
     tttgcaanac cgaaggacat ctcaaacgag tgtgcctcaa attccaatcg caggggggac      1200
     aatcaaagaa gggtaaagat attcaaaaga aaacgaaaac taaaatgcat acgaatctgg      1260
     ttgatgaggg tagcagtagc gaggaggaaa gggaagatga gtcagaggta gatgaagttc      1320
     ttactcttga gatttgtnaa gttgaaaagt caaaatnant gtccaaaatt gtgctaccgc      1380
     tgaatgtaaa caagcgggtc attcaattcg aggtagattg tgggtctccc gtttcgctca      1440
     tgagcctcgc cgacaagggg gtctacctgg acgggctgcc gttgctcaag accgacgtgg      1500
     agctgatcag ctactgcgga aataagatcg aggtntgtgg ttatgtgaaa gcggaggtac      1560
     aacataatgg taattcgaac tcgttgcgct tgtttgttgt aaattctgat cgtcatcctt      1620
     tgctgggccg tgagtggatg agggagctaa acgttgactg gaatgaaatc atacggaatc      1680
     cggtgtcttg cgtgggagct gtcgcggttc gtactcctga gaaaccgttg tctggtgctg      1740
     tgaaggattt gattgaacgt tttcctcggg tgttcgatnc gtcggtgggt acgattaagg      1800
     gtttccaggc tacgcttcat gtnaaaccga acagcaaacc cgtttttata aaagcgcgta      1860
     ctattccctt cgcgattcgg gacgctgtgg agcgtgaaat caagagtatg gtagaaagcg      1920
     gaattctgaa gaaggtggaa cgtagtgctn gggcaactcc agtggttccc gttatgaagt      1980
     cagcggaccg agtgcgtttg tgcggagact ataaggtgac agtcaacaaa tgcatcctgg      2040
     tcgacgaaca tcccttgccg accattgacg agctgttctc aaatatggcc ggtggcaaga      2100
     aattcacgaa gctggatttg gcacaggcct atctgcaaat ggaagtacga gaagaagatc      2160
     gtgaactact aaccctgaat acacatctgg gcctctatca gccaacgcgc ctgatgtacg      2220
     gtgtgtcgtc cgcgccggcg attttccagc gggagatttc gcagctgttg ggtgatattc      2280
     ccggagtctc ggtcttccta gatgacatca aggtgactgg ctcagataat aatactcatc      2340
     tggagcggct gaacatggtc ctacaacggc tggacgagca cggcctccgg ctgaacgtgg      2400
     cgaaatgtga tttctttgca gatcgcatag agtattgcgg gtttgtggtc gataaagagg      2460
     gaatacggaa gatgcaaacc aaagtagacg ctatccagga gatgccgaaa ccgtgcaacc      2520
     gtgagcaagt cagagcgttc gtggggttaa taaactatta cggccgtttc ctgaagaact      2580
     tgagtacccg tatttacccc atcaacaacc tcctgaaaga gaatgtatcg ttcaaatggg      2640
     acgaggactg tgacaaggcg ttccaatgga tcaaaaggga aatgcagtcc gatagagttt      2700
     tagtacacta cgatccgaaa cttccgcttg tactggctac tgatgcctct ccttatggtg      2760
     tcggtgcagt attgagtcat ctgtacccgg atggaaccga gaggccgatc cactatgcct      2820
     ctcaaacttt aaaccgatcg caacaaaact acatccaagt cgacaaagag gcctatgcga      2880
     tcatatttgg ggtcaaaaag ttttaccaat acctctttgg ccgtagattc accctcgtta      2940
     ccgacaacaa agccgttgct caaatcttgg cgccgcataa aggactcccg accctgagtg      3000
     ccttgcgaat gcagcactat gccgtcttcc tggagtcgtt cgattacgag ataaggttcc      3060
     ggggttcgaa ggagaatgcg aatgcggacg caatgtctcg actgccgatt gaagatgtga      3120
     ataaccagca ccggatcgag gaagtggatc ttgtggaggt taaccaaatt gaaacgttgc      3180
     ctgtaaccgc agaggaacta gcggagtgca ctaaggagga cgtgaatgtg aaaaatttgg      3240
     tgcaaggcct aaaagtggga aggaacgttg agggacgcga cagattcggc atcaaccaaa      3300
     gcgagttttc gatccagaag ggctgtctga tgagaggcat acgggtctac atcccttcca      3360
     aactgcgacg acgagtgctg gaagagctnc acacgggtca cttcggtgta tccagaatga      3420
     aatcattggc gcgatcgtat tgttggtggg cgactatcga ccacgatatt gaggagctgt      3480
     cgagagattg cagcgagtgt gccagagtcc gaaagaatcc ggcgaaggtc gttccgcact      3540
     gttgggaaaa agcgtcggaa ccattccagc gtatccacat tgactttgct gggccatttc      3600
     ttggactgta ctacttcgtg attgtggatt cgtataccaa gtggccggag gttaagatca      3660
     ttcccgatat gacaacggat accaccatca accgactgcg agaatacttc gtgacttacg      3720
     gagttccatc gatcatcgtc agcgatcgag gagtccagtt cacctcggac caattccagg      3780
     cttttttgaa acggaacaac atcacgcaca aaatgggtgc tccataccac ccagccacga      3840
     acggtcaggc tgaacggttt gttcaaacct ttaaggataa actgaaggca ctgaaatgtg      3900
     aaaggaaaga cgtccagttc gagctgtaca aaattttaat ggcatatcgc agaacagttc      3960
     acccagcgac gggacagtcc ccttctatgc ttgtgtttgg gagacagatg aaatccagac      4020
     tcgatttact ggtccctgcc tgtgtaccag aagaatcatt ccgtggaggc gaagagagcg      4080
     tgagacgttt tgcgatcaac gaaagggtag ctgtgcgtga cttcttagga tcctctaagt      4140
     ggaagttcgg tgcggtaact gaaagattgg gcaagctcca ctacatgatc gaattggacg      4200
     acggcagaat ctggaaacgc catgtggatc aaatgagagc gggtccaatg aaggagaaag      4260
     ctgaatccga ttcttggacg gagttctttg acagatcacg acgcgatcca acgacttctt      4320
     gcacaaacca accaagttcc tttgaatgca gcaatgacac tctaccacgt ctactatcaa      4380
     cagcccatca aactccgagc atggaacccc aaccagttgc ggaagagcca gccaatcaac      4440
     ccactacatc atcgagaccg actgtcgaaa aggttctgag cgaaacgcga gtactaccac      4500
     aggtggtaga caggtcagtg caatatagga acgagacacc tcgtagatcc tcaaggatca      4560
     gaaaaccacc aaaacgattg aacctgtaat gacctttgtg actaacacta ctaacttttt      4620
     gtgttgaatt ccatgtatgt gttaggacac aattctgtta agggggggaa agc             4673
//
ID   Gypsy-279_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-279_AA_;
KW   Gypsy-279_AA-I; Gypsy-279_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2661-2661 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 225 BP; 64 A; 44 C; 47 G; 70 T; 0 other;
     tgttgggatt tgaccttaaa tgcactgatc tgtattatat cgcacaatac tattccatga        60
     cctgtctatt agcgttagtt gtcattgaaa tccagtcagg aaatgagagc aaataaactg       120
     tcactaagtt gtgagcaaac gaacaagtaa gaagtgtttt ctttgctcgg tatctcgtcc       180
     ggagtttcta ctacgaatcc tcgtgcaaag ctgtcggtta cagca                       225
//
ID   Gypsy-27_AA-I repbase;    DNA;    INV; 4620 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   20-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_AA_;
KW   Gypsy-27_AA-LTR; Gypsy-27_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4620
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..4608
FT                 /product="Gypsy-27_AA-I_1p"
FT                 /translation="MQSIQVNVPPNPEIILDSLAANIKEFLYDPEXHSTFG
FT                 SWYARYEDLFAKDAERIDDSAKVRLLLRRLGTQEHYRYVSYILPNAPKDFS
FT                 FSETVEKLHGLFGTKESAVKKRYSTLTIAKSPTEDYVSYACRVNKMCVEFE
FT                 LSKMSEAQFKCLMFVCGLKSERDSEVRTRLLTKIEDNNCANLDALIEECQR
FT                 LINLKNDTAMIENPVAPAVQAIKGNVQHRKPSKKPFSEQRTHYHQQQQQSR
FT                 KSGPASPCWNCGAMHYARDCSFVNHKCSSCQQLGHKEGYCASAKRSAKTRK
FT                 SHNKQFSTKTVVSVNNVQGKRRFVWVKLNDIPVRLQLDTASDITIVSKQTW
FT                 ERIGKPAATPTVQSAKTASGEDLRLDFEFMCTVSLNDSVSTGHIYVSNNSL
FT                 NLLGIDFIDKLSLWSLPMDKFCNLIGGDGPIDEGSLQKAYPKLFSSTLGLC
FT                 TKTKVSLALKEACKPVFRPKRPVSYAMLPIVDKELDRLESLNIIAPVDFSE
FT                 WAAPIVVVRKSNGSIRICGDYSTGLNDRLLPHQYPLPLPQDIFSKLTGCTI
FT                 FSQIDLSDAFLQMEVDENSRKLLTVNTHRGLYQYNRLPPGVKAAPGAFQQL
FT                 MDVMLAGLPFTSGYLDDVIIGGRTEAEHQRNLHAVLQRIQEFGFTIRPEKC
FT                 SFGQKRLGYLGLLLDKDGLRPDPNKIKAIQDMPPPQDLTGVRSFLGAVNYY
FT                 GKFVPNMRALRYPLDELLKVSSSSFKWTKECQKAFEDFKRMLSSDLLLAHY
FT                 DPHQEIVVSADASSIGIGATISHKYPDGKMKVIQHASRALSSAEQKYSQPD
FT                 REGLAIVFAVTKFHKYIFGRHFRLQTDHAPLLRIFGSKKGIPVYTANRLQR
FT                 WALTLLSCDFSMEYVATDKFGNADVLSRLIDQHIKPDEDFVVACTSLEEDM
FT                 QSVANSAISQLPLSFRMVERATNSDPILRKVYRFVKHGWPKKRSDVTDQEL
FT                 LRYYDRQEALSIVEGSIMFSDRLVIPTVYRKRCLNQLHKGHPGVQRMKAVA
FT                 RSFVYWPCLDEEIINYVRDCRSCASAARSPPKATPEPWPKPTVPWQRVHID
FT                 YAGPLEGEFYLVVVDAYSKWPEIFPTKYITAKATINLLRSLFANKGMPEVL
FT                 VSDNGTQFTSAEFKEFCIENGVEHLTTAPFHPQSNGQAERFVDTFKRAVRK
FT                 IQEGKYSIKTALDIFLLTYRTTPNPNTPDGRSPAESMYNRRLRTSLELLRA
FT                 PRSQAPSEQLDTNDRHRSFIPNEAIYAKVYANNKWTWAPGTVVERVGRVMY
FT                 NVWVNERKLIRSHINQLRSRGTTTHRTSKEHILPLDILLSECNLAKPATFS
FT                 DPVQTTPSPESRLDLSTRVSSSESSSSSSEASSSSSATTSSAGFQSAVEAS
FT                 PAIKVPRRSSRNRRPPQRFNAYQRF"
XX
SQ   Sequence 4620 BP; 1300 A; 1184 C; 1080 G; 1050 T; 6 other;
     gtggcgacga gtagtaaagt gattttacgt cggtttcgcc ggtttcgcgt agtgagaaat        60
     cawttaagaa attaccacga cgccaccgac gaaacggaga aagcgcacat atagtgcaat       120
     ggaggaggca cagcaagcat cgggagccaa tccacccgtg catagccaga acggacatca       180
     tcaacaaaat gcccagcacc aacatccgtc tckgcagcaa catcagcttc caccacgaca       240
     accgcctctt ctaccaccac atcagcagca tcctmcacct aacctcaacc aaccacagct       300
     cggctccaca cacgatgccc tcatcctgca agtactgcag caactgcagc atcagcaagc       360
     cagmtcctcc agcagcaacg agattcccag caacagcaac agcagggagc acttcagcaa       420
     caggaggcga ttttccggaa cgctatgcaa tctatccaag ttaacgttcc acctaaccca       480
     gaaatcatct tggactcgtt agctgcgaac attaaggagt tcctstacga cccagaagsc       540
     cattccacat tcgggtcgtg gtatgccaga tacgaagatc tgtttgcaaa ggatgcagaa       600
     cgaatcgatg acagtgcgaa ggtacggctg ttactccgtc ggttaggaac tcaggagcat       660
     taccgttatg tgagttacat tctcccaaat gcaccgaaag atttttcatt ttcggagacg       720
     gtggagaagc tgcatggcct tttcggcacc aaagagtcag cagtgaagaa acggtattcc       780
     acactcacta tcgcaaaatc acccaccgaa gattacgtat cctatgcctg tcgggtgaac       840
     aaaatgtgtg tggagtttga gttatcaaaa atgtctgagg cccagttcaa atgtttgatg       900
     tttgtttgtg ggctgaaatc agaacgcgac tcggaggtac gaacacggtt gctcacgaag       960
     atcgaggata acaactgtgc caatctggat gcgctcatcg aagaatgcca acggttgatc      1020
     aacctaaaga acgatacagc tatgatcgaa aatccggtag caccagcagt tcaagccatc      1080
     aagggaaacg tgcaacaccg caagccttcc aagaaaccat tcagcgaaca acgtacccac      1140
     tatcaccaac agcagcagca atcacggaag agtgggccgg cttcgccttg ctggaattgt      1200
     ggtgcgatgc actacgcaag agactgcagc ttcgtcaacc acaagtgttc gtcctgtcaa      1260
     caactgggac acaaagaagg atattgcgcc agtgctaaga gatcagcgaa gactaggaaa      1320
     tcccacaata agcagttctc caccaaaacc gtcgtttccg tcaacaacgt tcaaggtaaa      1380
     cgtcgtttcg tctgggtgaa gttgaacgac attccggtgc gactccagtt ggacacagca      1440
     tcagacatca ccatagtgtc gaagcaaaca tgggagcgaa tcggtaagcc agcagctact      1500
     ccgactgtgc agagcgctaa gactgcatca ggggaagacc tccgccttga ctttgagttc      1560
     atgtgcacag tttctctcaa cgattcggtg agtaccggtc acatctacgt ttcgaacaac      1620
     tcgttgaatc ttttagggat cgatttcatc gacaaactca gcctttggtc attaccgatg      1680
     gataagtttt gtaatctcat cggcggtgac ggaccgatcg atgaaggttc attgcagaag      1740
     gcctatccca aactcttcag ctcgactctg ggactttgca cgaaaacgaa agttagtttg      1800
     gctttgaagg aggcgtgcaa accagttttt cgaccaaagc ggccggtgtc ctatgcgatg      1860
     ctaccgattg tagacaagga gcttgatcgg ttggaaagcc taaacattat cgcccccgtg      1920
     gacttttcgg agtgggcggc gccaattgtc gtcgtcagaa agtcgaatgg aagcatccga      1980
     atatgtggcg attattcaac ggggttaaat gatcgtctat tgccacacca gtaccccttg      2040
     cccttgcctc aggacatatt ttccaagttg actggctgca caatatttag ccaaatcgac      2100
     ttatcggacg cctttctgca aatggaagtc gacgaaaaca gccggaaatt gctcaccgtc      2160
     aatacccacc ggggcttgta ccaatacaac aggctccctc ccggagtgaa agcagccccg      2220
     ggagcttttc agcaattgat ggacgttatg ctggctggac taccgtttac ttcgggctat      2280
     ctggacgacg tcattattgg tggcaggact gaagcggaac atcagcgaaa tctgcacgca      2340
     gttctccagc gcatccaaga gtttggattt acaattcgtc cagaaaagtg ttcctttgga      2400
     caaaagcgac tcggatattt aggccttctt ctcgataaag acggccttcg ccccgatccg      2460
     aacaaaatca aggcaatcca agatatgcct ccaccacagg acctcactgg tgtccgatca      2520
     ttcttaggcg ccgttaatta ttacgggaaa tttgtcccga atatgcgcgc cctgagatat      2580
     ccgctggatg aacttctcaa ggtttcttct tcttctttca agtggacaaa agaatgtcag      2640
     aaggcttttg aagacttcaa aaggatgtta tcgtctgacc ttctgttggc acactacgat      2700
     ccccatcaag aaattgtggt gtcagctgat gcgtcgtcca ttggcattgg agctacaata      2760
     agccacaagt accccgatgg caaaatgaag gttatccaac atgcttcacg ggcattatca      2820
     tccgccgagc agaagtactc tcaaccagat cgtgaaggat tagcgatcgt gtttgcagtg      2880
     accaaatttc acaagtacat cttcggaaga cattttcggc ttcaaacgga tcatgctcca      2940
     ctcttacgga tcttcggatc taaaaagggt ataccagtgt atacagcaaa ccgccttcaa      3000
     cgctgggccc ttactttgct ttcctgcgac ttttctatgg aatatgtcgc aacagataag      3060
     ttcggaaatg cagatgtgct gtcacgtcta attgaccagc atatcaaacc cgatgaggac      3120
     tttgtggtag cctgtacgag ccttgaagaa gacatgcaat ccgtagcaaa cagcgcaatc      3180
     agtcagctac cccttagctt tcgaatggtg gagcgagcca caaattctga cccaattctc      3240
     aggaaggtgt accgattcgt caaacacgga tggcccaaga aacggtcaga cgtcacagat      3300
     caggaattat tgcggtacta cgatcgtcaa gaagcactat ccatcgtcga aggtagtatt      3360
     atgttcagcg atagattagt cattccgact gtctacagaa agcgatgctt gaaccagctg      3420
     cacaaagggc acccaggagt ccaacgaatg aaggctgtcg cacgcagttt tgtttactgg      3480
     ccttgtctcg acgaagaaat catcaattac gttcgtgact gtcggagctg cgcctctgca      3540
     gctagatctc cgccaaaagc aacaccagag ccgtggccca aaccgacggt tccttggcag      3600
     agagtgcaca tcgattacgc tggcccactg gagggcgagt tttacttggt cgtcgtcgat      3660
     gcatacagta agtggccgga gatttttccg accaagtaca tcactgcgaa agctactatc      3720
     aacctgctgc gaagtttatt tgccaacaag gggatgccag aagtccttgt gtcagataat      3780
     ggcacacagt ttacgagcgc cgagttcaag gagttctgca tcgagaacgg agtggaacac      3840
     ttaactacag cacctttcca cccacaatcc aatggacagg ccgaaaggtt tgtagacact      3900
     tttaagcggg cagtcagaaa gatccaggaa ggaaaatatt ccattaaaac agcgttggat      3960
     atattcctac tcacctacag aaccactcct aacccaaata cacctgatgg acgatcacct      4020
     gcagagtcga tgtacaatcg tcggcttaga acatcgctgg aacttctacg cgcgccacgc      4080
     agtcaggcac cgtcagaaca gctggacaca aatgaccgac acaggtcgtt tattccgaat      4140
     gaagccattt atgcaaaagt ctacgccaat aacaagtgga cttgggctcc aggaacggtt      4200
     gtggaaaggg tcggccgagt aatgtataac gtttgggtca atgagagaaa gttgatccgt      4260
     tcgcatataa accagctacg aagccgaggt acaactaccc atcgaactag caaggagcat      4320
     attttgccgc tggatatttt actgagtgaa tgcaacttag ctaaacctgc aacgttttcc      4380
     gatccagttc agacaacacc ctcgccggag tcccggctgg acctatcaac cagggtgtcg      4440
     tcctcagaat catcatcgtc atcgagtgaa gcaagttcgt cgtcatcagc aacgacatca      4500
     tcagctggtt tccaatcagc agtcgaagct tcgccagcga ttaaagtccc tcgtcgatct      4560
     tctcgtaaca gaagaccgcc acaaagattt aacgcctacc agcgatttta gagagggaga      4620
//
ID   Gypsy-27_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   20-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_AA_;
KW   Gypsy-27_AA-LTR; Gypsy-27_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 227 BP; 57 A; 52 C; 45 G; 73 T; 0 other;
     tgttggggtc aaatggtcac cctaacgcta tcaactaggc tctccgttgg cagcctcgac        60
     tgtcgccggt agaggtcatt gttgtatgaa cgatgctcga ttccattatt gtattgtgtg       120
     atgtagttta ttaaagtcac gtttttatcc atctcaataa attagtttta aagttaacca       180
     acccacgatt ttattgccca aatgggccgc ctcgctacat cacaaca                     227
//
ID   Gypsy-27_AnFu-I repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4560
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2912-2912 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..4546
FT                 /product="Gypsy-27_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTNDNGASDASEDDARRSSLTRTAPFGPSHLFVPPT
FT                 QGPPPPSQYSGASSFQQPGSLTQNPESAVMYQMLQLMQQQMSQQQQMMSQM
FT                 MQIRPTQCNPESSHQQQPFTPQQPELIMESLARSLTEFRYEVESSATFETW
FT                 YARHEDLFKQDASRLDDAAKVRLLLRKLGTVEHLRYSNYILPRCPRDVSFE
FT                 ETVDILKSLFGSEESTVSKRYNCMQLTKTRSEDILAFICRVNRSCVDFNFS
FT                 AMTEHQFKCLILVCGLKDEADAEIRTRLLARVEERNDVTLDDLAAVCRRLK
FT                 HVKGDSVMIGTKTNEQVLAVHKGSMKTKPSALPRTDRTATHQHKPSQYKPN
FT                 ESTSSAKPTRPCWLCGEPHWVRECSYGSHKCNDCGKSGHREGYCNTSRRRK
FT                 RFGNFKKRTSVATRFVTVNVCKVNQRRKFIGIRICGKDVRLQLDTASDITV
FT                 ISRPLWQLLGQPSLAPASVSAKTASGDALQLDGEFETEIMVAGKSLNATVR
FT                 VTPADLKLFGADMIELFDLGSIPMDVFCNMLGSSPFVKDLEAKFPAVFKGA
FT                 GRCTKTRVKLQLKEGVRPVFCNKRPVAYAMIGTVNEELDRLEKMNVITPVD
FT                 HAEWAAPIVVVRKANGKIRICGDYSTGLNSALQSHEYPLPLPDDIFAKLAQ
FT                 CKWFSKIDLSDAFLQVEIDEQYRPLLTINTHRGLYYYNRLPPGIKVAPAAF
FT                 QQIMDAMLSGLQGTSGYMDDVVVGGKTEEEHDDNLDKLFRRLQEYGFTVRA
FT                 DKCSLKMKEINYLGHVIDGNGLRPNPAKIEAITNLPPPTDISGVRSFLGAI
FT                 NYYGKFVPKMRELRYPLDNLLKDGNKFDWNQQCAKAFQAFKRILSSDLLLT
FT                 HYDPNADIIVAADASSIGLGATISHRFPDGTTKVVQHASRALTKAEEKYSQ
FT                 IDREGLAIIFAVTKFHKMLYGRPFRLQTDHRPLLRIFGSKKGIPVYTANRL
FT                 QRFALTLQLYDFTIEYVPTGDFGNADILSRLIRNHAKPEPEYVIASLELEN
FT                 DVRSVVVNAIYSFPLTFRDVEQHTQTDPLLRKVQKYIREGWPRNESYGTDL
FT                 SGFYNRKEALSSVGGCILFRERVVIPEKLRLRCLNQLHQGHPGIQRMKSLA
FT                 RSYIYWPALDSDIADRVATCSSCMAAAKSPPLVESQPWPKPSKAWERVHID
FT                 YAGPLDGYYFLIVVDAFSKWPEIVKTSSTTATATISILRNIFARFGMPHKL
FT                 ISDNGTQFTSEAFSEFCIHSGIEHVTTAPFHPQSNGQAERFVDTFKRALRK
FT                 IRTDTISLDEAQEIFLLSYRSTPHPGLDGRTPADILLGRNIRTTLELLRPP
FT                 SSSDVKEPYYGRKFTRGDPVFAKMFCRNRWKWIAGKISRRIGNVMYEIESE
FT                 NGQMHRRHINQLRKRLISGQRLDTYSADNHLPLDFLVGSSHDVNSSPDHQR
FT                 ASPDEVPSAEPLISSQPHSIVSPEPTSSRTIRDRPPIHSPRRSSRLRRFPR
FT                 RFDAYRLY"
XX
SQ   Sequence 4560 BP; 1265 A; 1104 C; 1095 G; 1095 T; 1 other;
     ctggcgacga gaaaaaaaaa aaccgaacta ttttgtgata aacattttaa tgtgcatatt        60
     ttatctcgtg aacgtccatc gtgtttgtta aacgaaaatt ccgcggccac cgaccaaaaa       120
     gcgaaagatg agcaccaacg ataacggtgc atctgatgcg agcgaagacg atgcgcggag       180
     atcatcattg acgcgcaccg ccccctttgg tccatctcat cttttcgttc ctccgacgca       240
     aggcccaccg ccgccatcgc agtatagcgg agcgtcatcg tttcagcagc cgggatcgtt       300
     aacccaaaac ccggaaagtg cagtgatgta tcagatgttg cagttaatgc aacaacagat       360
     gtcccagcag cagcaaatga tgtcgcagat gatgcaaata cggccgacgc agtgtaatcc       420
     ggaatcctcg catcaacagc agccttttac cccgcaacag cccgagctta ttatggaatc       480
     cttggcgcgt agtttgacgg agtttcggta cgaggttgaa tccagcgcaa cgtttgaaac       540
     gtggtatgca cgtcacgagg atttattcaa acaggacgcc tcccgactcg acgatgcggc       600
     taaggttcgg ctgttactcc ggaagctggg cacagtggag catttacgat actctaacta       660
     catattgccg cgttgtccgc gagatgtatc gttcgaggag accgtagata ttttaaaatc       720
     acttttcggc agcgaggaat caaccgtgag caagcgatac aattgtatgc aattgactaa       780
     aacgcgctca gaagacatcc ttgcattcat ctgtcgcgtg aaccgttcat gtgttgattt       840
     taatttttcg gcgatgaccg agcatcaatt taaatgcctg atattggtgt gtgggttgaa       900
     agacgaagct gatgccgaaa tccgaacaag actgctcgca cgtgtcgagg agcgaaatga       960
     cgtcacgcta gatgatttgg cagccgtatg ccgccgccta aagcatgtaa aaggggatag      1020
     cgtgatgatc ggtacgaaaa caaacgaaca ggtcctagca gtacacaaag gtagcatgaa      1080
     aacgaagcca agtgcgttgc ctcgaactga ccgaaccgct acgcaccaac acaaaccttc      1140
     gcaatacaag ccaaatgaat caacgtcatc tgctaagcca acaaggccct gttggttatg      1200
     cggtgaacca cactgggtga gagagtgctc atacggctct cacaaatgta acgattgtgg      1260
     aaaaagtggg catcgcgaag gttactgcaa tacctcaaga cgcagaaaaa ggttcggtaa      1320
     ttttaaaaag cgcacttcgg tagctacacg ttttgtaacg gttaatgttt gcaaggtcaa      1380
     ccaacggcga aaattcatcg gcataaggat ttgcggaaag gatgtgcgtt tgcagctaga      1440
     tacggcatcc gatatcaccg ttataagtcg cccgttatgg caacttttag gtcagccttc      1500
     attagctcca gcgagtgttt ccgcaaaaac agcgtccggt gatgcgcttc agctggatgg      1560
     ggaatttgaa acagaaatca tggttgcagg gaaaagcttg aatgctaccg ttcgggtgac      1620
     accggccgat ctcaagcttt ttggcgctga tatgatcgaa cttttcgatc tcggttctat      1680
     ccctatggat gttttttgca acatgctagg atccagtcct ttcgtaaagg atcttgaagc      1740
     aaaattccca gcggttttca aaggtgcagg gcgctgcacc aagacacgag ttaaactgca      1800
     gctgaaggaa ggcgttcgtc cggtattttg caataaacga ccagtcgcgt atgcaatgat      1860
     tggtacggtc aacgaggaac tagataggct ggagaaaatg aatgtcatca cccctgttga      1920
     tcatgcggaa tgggcagcac ctatcgtggt tgtccggaag gccaatggaa aaattcgaat      1980
     ctgcggagat tattcgacag gtttgaattc cgcgctccaa tcgcatgagt atccactccc      2040
     attgcccgat gacattttcg caaagttggc gcaatgtaaa tggtttagca aaatagacct      2100
     ttccgatgcc ttcctgcagg tcgagatcga cgaacagtat cgacctttgt taaccataaa      2160
     cacgcatcgt gggttgtatt actacaaccg ccttcctccc ggcatcaaag tagccccagc      2220
     cgcgttccag cagataatgg acgcgatgct ttcaggactt caaggaacct cgggctacat      2280
     ggacgacgtc gtggtcggag gcaaaacgga agaagaacac gatgataatt tggacaaact      2340
     attccgccgc cttcaggagt atgggtttac cgtccgagct gataaatgct cattaaagat      2400
     gaaggaaata aattacctcg gacacgtaat tgatggtaat ggtcttaggc caaaccctgc      2460
     taaaatagag gctataacca atcttcctcc tcccaccgat ataagcggcg tgcgatcctt      2520
     cttgggtgct ataaattatt atggcaagtt tgtccctaaa atgcgagaac taagatatcc      2580
     gctggataac ttgttaaaag acggaaacaa gtttgattgg aatcagcagt gcgcaaaggc      2640
     tttccaagcg tttaagagaa ttttgtcatc ggatcttctt ctcacgcatt atgatcctaa      2700
     tgcggatatc atcgtagcag ccgacgcttc atcgatcgga ttgggtgcca ccatttcgca      2760
     cagatttccg gatggcacaa ctaaagtcgt acagcatgct tcacgagcgc taaccaaagc      2820
     cgaagaaaaa tacagtcaga tagatcgaga agggttagcc atcatctttg ccgtaacgaa      2880
     gttccacaag atgctgtacg gtcgaccgtt tcgccttcaa accgatcacc gaccgctgct      2940
     acgaattttc ggttccaaga aaggcattcc agtgtacacc gcaaatcggc tgcaacgctt      3000
     cgcgctgacg ttgcagttgt acgatttcac catcgaatat gtacccaccg gcgattttgg      3060
     gaatgctgac atactgtcca ggctgatcag gaatcatgca aagcctgaac ccgaatatgt      3120
     catagccagc ctcgaattgg aaaatgatgt aagatctgtt gtggtgaatg ctatttactc      3180
     atttcctctt actttcagag atgtcgagca acacacacag actgatccct tactgcgcaa      3240
     ggtacaaaaa tatattcgtg aaggctggcc gcgcaatgag tcatacggaa cagacctatc      3300
     gggtttctac aacagaaaag aagctttgtc tagtgtagga ggctgtattc tttttaggga      3360
     gagagtggtc atccctgaga agctacgctt gcgatgtcta aaccaactcc accaagggca      3420
     tccaggaatc cagcgtatga aatcgttagc acgcagctat atatattggc ctgcgttgga      3480
     tagcgatata gcagaccgcg tagccacctg ctcgtcctgt atggcagctg ctaaatcacc      3540
     tcccctcgtc gagtcacagc catggccgaa accgtcaaaa gcatgggagc gtgtacatat      3600
     cgactacgcc ggaccactgg acggttacta ctttctaatc gttgttgatg cattctctaa      3660
     gtggccggaa atcgtgaaga cgtcatctac taccgcaact gctaccattt cgatcctgag      3720
     aaacattttc gcacgtttcg gtatgccgca caagttaatc agcgataatg ggacgcaatt      3780
     cactagcgaa gcgtttagtg aattttgcat acacagcggc atagagcatg ttactacggc      3840
     cccatttcat ccacagtcga acgggcaagc agagagattc gtggatacct ttaagcgtgc      3900
     cctacggaaa attagaacag atacgatttc tcttgacgaa gcacaggaaa tctttcttct      3960
     atcatatcga tcgacaccgc atcctggcct tgacgggcgt acgccggccg acatactgct      4020
     tggtcgaaac atcagaacaa ctttagagtt gctaagaccg ccgtcatcgt cagacgtgaa      4080
     agagccatac tacggaagaa aatttacacg cggtgatcct gttttcgcca aaatgttctg      4140
     ccggaatcga tggaagtgga ttgccggtaa gatttctaga agaatcggca acgttatgta      4200
     cgaaatcgag agtgaaaacg ggcaaatgca tagacggcac attaaccagc ttcgcaaacg      4260
     tttaattagt ggccaacgtc tcgataccta ttcggctgat aaccatctac cgttggactt      4320
     cctagtaggc agttcacacg acgtaaattc ctctcctgat catcaacggg catcgcctga      4380
     cgaggtgcct tcggcagaac cgctgatwtc gtcgcagcct cactccattg tcagtccgga      4440
     gccaacctca tcccggacca tccgtgatcg accgccgatt cattcaccac gccgatcttc      4500
     taggcttaga agattcccgc gtaggttcga cgcgtatcgg ctttattaaa gagggggaga      4560
//
ID   Gypsy-27_AnFu-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-273
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2840-2840 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 273 BP; 65 A; 63 C; 71 G; 74 T; 0 other;
     tgttgtgatc cagcctggcc gagccttatt ataccagttg ctcgccgttg acagctaagc        60
     tgtcaacgtg tcgatgtagt cgtgcaagga gggctcggca ggtcaacggt ccttcggcgt       120
     cgaagggaga attcggaatg gcgcaatcgg agcccaagcg atcggtcgtg tacgcaagtt       180
     ttatccacgt tttaatgtaa aatataagtt cttgtttgta acccgcgttg taattcgtcc       240
     cttataatat cacacgcgtt cacggacata aaa                                    273
//
ID   Gypsy-27_AnMe-I repbase;    DNA;    INV; 5714 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5714
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6839-6839 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           995..1999
FT                 /product="Gypsy-27_AnMe-I_1p"
FT                 /translation="MASSLTEHISNLENIKDRLKDIAKTFRSCQIKIIKKQ
FT                 ISDGYEKLQIDLVKLEGKIKEDELNNLVRSSRKIYCELTELVQFHEKKSLD
FT                 KVSQTMTSPVEIIKIASALVPTYNGNEKEAVTFIAALKALKAVVEDANNGI
FT                 AVCVVVSKLRGKALTVVGENPSNIQTIIEKISTKCISKKTPEDLVEIIKRT
FT                 TQKGTAKAFGEEIVELTRQLENAYLEEETPAARATEKANRAGMQALVTGLR
FT                 KEQYQTIVMSGNFASLGQAIEAVNKAESYQVNDPSPPQREIAKNWKKPAQN
FT                 WREQKPQSWRERPQQNWRSNPQPTQQNNFSGQNQREVRYAEAN"
FT   CDS           1930..5667
FT                 /product="Gypsy-27_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SPTNTTKQFFRTEPEGGEIRGGELKPSRSLTANCVRS
FT                 TYTINIKKSNFVKVKLGLSDSICTLLVDTGSDICIIKGQFVKKTQVYQPKD
FT                 NCDIQGIGQGTIISHGSTYTDILVEGQSVFQEFHIVPQDFPIPFDGILGRD
FT                 FYTSYQCRIDYYLWILQIKYEGEDLEIPMEDTLEGKTLIPLRCEIIKEVKF
FT                 LNKLRRDEVVCAQELQKDVLVGNCIVNENSPYVKIINTSDEPKLVRINHLR
FT                 TIPLDQYDVVQNQLNNENRVENLKNAVQTSNCSKNTGIAFNNLLMEFNDIF
FT                 HLPGDKLTVNNFYEQKIRLEDKAPVYIPNYKQNHAQLPEIKEQVGKMLEDD
FT                 IIEPSVSHYNSPILLVPKKSSTEKKWRLVVDFRQLNKKILPDKFPMPRIDT
FT                 ILDQLGRAKFFSTLDLMSGFHQIPLAENSKKYTAFSTPDGHYHFKRLPFGL
FT                 NISPNSFQRMMTMAMTGLPPECAFVYVDDIVVIGCSENQHLKNLRQVFGKL
FT                 RQYNLKLNPEKSHFFKKEVTYLGHKITDKGILPDDSKYDSVRKYPVPTNAD
FT                 EVRRFVAFCNYYRKFVPNFSEKAQPLNNLLRKKVTFEWTPECQAAFEYLKD
FT                 ALINPKILQYPDFEKEFILTTDASTTACGAVLSQTHDGTELPIAFASRTFT
FT                 KGESNKAIIEKELLAIHWAIEHFRPYLFGTRFRVKTDHRPLVYLFGMKNPS
FT                 SKLTRIRLDLEEFDFIIEHVKGEQNVVADALSRINITSDDIKNINVLTRSM
FT                 VKQNATDKVTDTLAQKQPKMYHSLSFEEIEDVPKLQVEVKENENTIELAGK
FT                 VLNKNKTKVLLLVRDFYLKGDIGKEEPLLVKDFYKRKENSALVQFFRILER
FT                 KAKAAKLKIFAISNKDKLFEKISVEDAKKIANESLINLEIKIYENQKEITN
FT                 QEEITNILKNNHETPTGGHLGQTRMFKKIRREFKWNNMKRIIKEYVNNCKL
FT                 CKLNKHQQKTIEKFVKTDTPYQPFQTISIDTVGPFPKTYKGNRYAVTIQCN
FT                 FTKHITIIAIPNKEASTIARAIVEQFMLIYGTNVSQIRTDMGTEYKNDVFN
FT                 NITDILKIEHKFATAYHPQTIGALERNHKCLNEYLRIYTNEHKDNWDEWIS
FT                 YYTFSYNTTPNLEHGYTPFELVFGRREKIQHEISNHSNPIYNYEDYSQELK
FT                 YRLKLAHDRTRSFMEREKDKRISQQVKVNPIDLQINDEIAITNENRRKLDP
FT                 IYKGPYTVIKIDGTNVTIKDQKGQTQIVHKNRAIKM"
XX
SQ   Sequence 5714 BP; 2276 A; 1082 C; 1088 G; 1267 T; 1 other;
     tggcgaccgt gacagtttaa acaagtgcgc gtaagcaatc gacatatcgt cccaaataag        60
     tgcgcgtaaa caaaaatcga gcaaaagcgt gaggaacaag tgactatcag gtkcaaacca       120
     tagcaagagc agtgtttata aacatcgaca ataagcaaca agtgcagtgt cgcaggttgt       180
     aaaaacaaaa acaaaagtga acttgagacc gcaagcgaag cgcggaagtg agttacaaac       240
     aataagtgca gtgtttgtgc cgttaaactt atttagtgaa aacacatata aagctagtat       300
     gggtaatgat aactcgaaac cggaaacgga tgtgaaagga aacaacgact taactattgt       360
     gcaaacccag aacattcata cggagcaaca cgaagcccac gaactcaaac taaatttgat       420
     tctggcgctt atgatcataa tttgcgtagt taagttattc aaaacattat acagaatggt       480
     taaggcacag gcacacaaac aagccatcaa agttttgtca ctgccaaagt aaaaaggtat       540
     aaataccaag tgagtgagtg aaaagtgcac attccaaccc gagcaccaca ggaagcacag       600
     cgaccagccg gaagaaacca cgcagcaagg caaaaacaca aaaacaaccc cttcaaagcc       660
     gaggcagcat ctgcaggaag aaagcgacaa cgaaaaccag acgcaggaaa cagaccagac       720
     gagatgcgag caagcatcaa gaaacaacaa caagcaacac gcagtaacta cagaaaagca       780
     ctgcagttcg tgaaatggat gttcaatgaa cacgagaagg taaacctttc caaaattctc       840
     gcgtctacag aaagcgtcat tttctgtaag agggctacac caagaaaaga agcgttggat       900
     acggcggcag ccacagtcca aattgttaag gctctcgcaa taaatgagat catagataat       960
     taaacaaaaa aaaaagtgat agtcaaatta tttcatggca tcttcactaa cggagcatat      1020
     atcaaattta gaaaacatta aagaccggct aaaagacatt gcaaaaactt ttaggtcgtg      1080
     tcagattaaa ataataaaaa aacaaattag cgacgggtac gaaaaattac aaatcgacct      1140
     tgtcaaactc gaaggaaaaa taaaagagga cgaactaaat aatctggtaa gaagcagtag      1200
     aaaaatctac tgtgaattga cggaactcgt ccaatttcac gagaaaaaaa gtctggataa      1260
     agtttcacaa acaatgactt cgccagtaga aatcattaaa atcgcgtcgg cactagtgcc      1320
     gacatacaac ggcaacgaaa aagaagctgt gacatttatt gcagccttaa aagcgttaaa      1380
     ggccgtagtg gaagacgcaa acaacgggat cgctgtttgc gtcgttgtat caaaattaag      1440
     gggaaaagcc cttacagtgg taggagaaaa cccttcaaat atccaaacca tcatagaaaa      1500
     aatatcgaca aaatgcatat caaagaaaac accagaagat ctcgtggaga tcataaaaag      1560
     aactacacaa aagggaacag caaaggcttt tggggaagaa atagtagagt tgactagaca      1620
     actcgaaaat gcttatctgg aggaggaaac gccagcagca agagccaccg aaaaggcaaa      1680
     tagggcggga atgcaagccc tagtcactgg tctaagaaag gaacaatacc aaacgattgt      1740
     aatgtcggga aatttcgcct ccttaggaca ggcaatcgag gccgtcaata aggcggaatc      1800
     atatcaagta aatgatccct ctcccccaca acgagaaatc gccaagaact ggaaaaagcc      1860
     cgcacaaaac tggagggaac agaaacctca aagctggaga gaaagacctc agcaaaattg      1920
     gaggtctaat ccccaaccaa cacaacaaaa caatttttca ggacagaacc agagggaggt      1980
     gagatacgcg gaggcgaatt aaaaccatcc cgatcattaa cagcaaactg tgtacggtca      2040
     acatacacaa taaacataaa aaaatccaac ttcgttaaag ttaagttagg attatcagat      2100
     tccatctgta ctcttctagt cgacactgga tctgatattt gtattataaa aggacaattt      2160
     gtgaaaaaaa cacaggtata tcaacctaaa gataactgtg acattcaggg aataggccaa      2220
     ggaacaatta tttcccatgg ttctacatat acagacattt tagtcgaagg acaaagtgtt      2280
     ttccaggaat ttcatatagt tcctcaggat tttcccattc cgtttgatgg aattttaggt      2340
     agggattttt ataccagcta ccaatgcagg atagattatt atctatggat tctacaaatt      2400
     aaatatgaag gagaagatct ggagattccc atggaagata cgctagaggg caaaacttta      2460
     atacccctta gatgcgaaat tatcaaagag gtaaaatttt taaataagct cagaagagac      2520
     gaagtggtat gcgcacaaga actccaaaag gatgttctag ttggaaattg catcgttaat      2580
     gaaaactcac cttacgtgaa aataattaac acttcagacg agccaaagct ggttagaatc      2640
     aaccacctaa gaacaattcc cctagatcaa tacgacgtgg tacaaaatca actcaacaat      2700
     gaaaacaggg tggaaaattt aaaaaacgca gtacaaacta gtaactgctc taaaaataca      2760
     ggtattgctt tcaataattt gctgatggaa tttaatgaca tattccatct acccggggat      2820
     aaactaacag ttaataactt ctacgagcaa aaaataagac tagaagataa agctccggta      2880
     tacataccaa attataaaca aaatcacgca cagctaccgg aaataaagga gcaagtcggc      2940
     aaaatgttag aggacgacat catcgaaccc tcagtgtcgc actacaactc accaattttg      3000
     ctcgtaccaa aaaaatcttc aacagagaag aaatggagac tagtggtcga tttccgacaa      3060
     ttaaacaaga aaatattacc cgataaattt ccaatgcccc gcattgatac aatactagac      3120
     caattaggac gtgctaaatt tttcagcaca cttgatctga tgtctggttt ccaccagatt      3180
     ccactggcag aaaattcgaa aaaatacacc gctttttcta caccagatgg ccactaccat      3240
     ttcaaaaggc ttccgtttgg acttaatata tcccctaaca gcttccaaag aatgatgacc      3300
     atggccatga ctgggcttcc cccagaatgc gcgttcgttt atgtagacga catagttgtc      3360
     attggatgct cggagaacca acacttgaaa aatttacgac aagtgtttgg aaaactaagg      3420
     caatacaatt taaaattgaa ccctgaaaaa agccattttt tcaaaaaaga ggttacatac      3480
     ttagggcaca aaattactga taaaggaatt ttgcctgacg actctaagta cgacagcgta      3540
     agaaaatacc cggtacctac aaacgcggat gaagttagga gatttgttgc tttctgcaat      3600
     tattatagaa agtttgtgcc aaatttctca gaaaaggcac aaccacttaa taatctgctg      3660
     cgcaaaaaag taacatttga atggaccccg gaatgccaag cggcatttga atacctaaag      3720
     gacgcactga taaatcctaa aattttgcaa tatccagatt tcgagaagga gtttatatta      3780
     acaaccgatg cgtcaacaac agcttgcgga gcagtattat cgcaaacaca cgatggtact      3840
     gaacttccaa tcgctttcgc aagtcggacc ttcacaaagg gagaaagcaa taaggcaatc      3900
     atagagaaag aattactagc aattcattgg gcaatagaac acttcagacc gtatcttttc      3960
     ggcacaaggt ttagagtaaa aacggaccat agacctctgg tatatttgtt tggaatgaag      4020
     aacccttctt ccaaattgac aagaatccgt ctagatcttg aagaattcga ctttataatc      4080
     gaacatgtga aaggagaaca gaatgtagtt gcagacgctc tatcccgtat caacatcacg      4140
     tcagatgaca ttaaaaacat caacgtgctg acaagatcaa tggtgaagca gaacgctaca      4200
     gataaagtta cagatacttt agcgcaaaaa cagccgaaaa tgtatcactc tctttcattc      4260
     gaggaaatcg aggacgtgcc aaaactacaa gttgaggtga aggaaaacga aaacactatt      4320
     gagctagcag gaaaggtttt aaacaaaaat aaaactaaag ttctcctatt agtaagagac      4380
     ttttacctca agggcgatat aggaaaggaa gagcctttat tagtaaagga cttctataaa      4440
     agaaaggaaa actctgcatt agtgcaattt ttccggatac tagagcgaaa agccaaggcg      4500
     gccaaattaa aaattttcgc tatatccaat aaagacaagc tatttgaaaa aatcagcgta      4560
     gaagatgcca agaaaattgc caacgaaagt ctaataaatc tcgaaataaa aatctatgaa      4620
     aatcaaaaag agataacaaa tcaggaggaa ataacgaata tactcaaaaa taatcatgaa      4680
     acacctacgg gaggtcatct aggacaaact aggatgttta aaaagattag aagagaattt      4740
     aaatggaata acatgaaaag aatcataaag gaatacgtta acaattgtaa actttgtaaa      4800
     ctaaacaaac accaacaaaa aacgattgaa aaatttgtaa aaacagatac accataccaa      4860
     ccgtttcaaa ctatatctat agatacagta ggaccttttc caaagacata caaagggaat      4920
     agatacgctg taacaataca atgtaatttc acaaaacaca taaccataat tgcgatacca      4980
     aacaaagaag ccagcacgat tgctagagct atagtagaac aatttatgct gatatacgga      5040
     acaaacgtat cacaaattag aacagatatg ggtacagagt ataaaaacga tgtatttaac      5100
     aacataacag atatacttaa aatagagcac aaatttgcca cggcttacca tcctcaaacc      5160
     ataggagcgc tagagcgtaa ccacaaatgc cttaacgaat atcttaggat atacactaat      5220
     gaacataaag acaactggga tgaatggatt agctattaca cattttcgta taatactacg      5280
     ccaaatttag aacatggata cactccattt gagttagttt ttggaagaag agagaaaata      5340
     caacacgaaa tatcaaacca cagtaatccc atctacaatt acgaagatta ctcgcaggaa      5400
     ctaaaatatc gattaaaatt ggcacacgat agaacaagaa gttttatgga aagagaaaaa      5460
     gataaaagaa taagccagca agtaaaagta aatccaatag atttacaaat taatgacgaa      5520
     atagcaataa cgaatgagaa taggagaaaa ctggacccaa tttataaagg gccatataca      5580
     gtaatcaaaa tagatggaac taatgtaact attaaggatc aaaagggaca aacccaaata      5640
     gttcataaga atagagcaat taaaatgtga gaataactcc atttagatta cgttattctt      5700
     ccggagggtg gagg                                                        5714
//
ID   Gypsy-27_AnMe-LTR repbase;    DNA;    INV; 755 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-755
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6864-6864 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 755 BP; 237 A; 189 C; 158 G; 168 T; 3 other;
     tgtagcatcc atgctatcgc gtacccgctt gacgcatgaa tgctaacagc mgagtaaaac        60
     actgcacatg cgtcccgtgc tttactgcac acgcakttcc gtgttttacc atggtggtcg       120
     caccacccaa gtaggaaata aacaaggaag acctccaaag taggtcataa ataaggaaga       180
     acaattagca taagaaacgc attagacctt aagcaaaaca ttgtaaattg taaaagccca       240
     ccaggaaggc gaccctcttg acaaacatgc gtttgtcaaa gcgcatcaag ttgcgaaaga       300
     gaaagttacg agcgtaaaca tctggtgaac aaatgtgcgc tagctttctt aagatgggag       360
     tataaataaa gctatcagaa cggacagaag gtcagttctg atcggacata ggatcgtaca       420
     tctcgtccct tcaactcact tatgagcagt attgtccccc tacccaaggt aaggctctac       480
     tgtctccaac aaacgcaccg tgtatcagct ggccggtcag caaaacccca atccgaaagg       540
     ttaacgtatg ctaagtggca taacgtcgtt cccacggttt agcataactg gaagttcgct       600
     tttcacctga cgcagwttga tttcaattgt tacgcaaggt caagttcgat tagtttaccg       660
     cgcgaaatgc aatcgcgaag tgctaactca gcgctgccac taggcctatg acgcgaaccc       720
     gtaccgaacc aacaacaata attccaaaca ccaca                                  755
//
ID   Gypsy-27_CQ-I repbase;    DNA;    INV; 4327 BP.
XX
AC   AAWU01011305;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_CQ_;
KW   Gypsy-27_CQ-LTR; Gypsy-27_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4327
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 433-433 (2011).
XX
DR   GenBank; AAWU01011305; Positions  102974  107300.
XX
CC   Positions [3400-3864] - Integrase core
CC   'GTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..4317
FT                 /product="Gypsy-27_CQ-I_1p"
FT                 /translation="MPDTPPAALAPAPVTSGNQLLLNLLQGQQKLLEELVK
FT                 NSVTQKDTKNSNEFVMESFSNTMSEFAYDPENDVTFASWYSRYEDLFSKDA
FT                 SALDGASKVRLLLRKLSPAAHQRFVDYILPALPKHKTFEQTVDILKAIFGE
FT                 GISTFRKRFRCLQTVKSGQEDFISYSATVNRRCEEFNIGATKADQFKCLVY
FT                 VCGLQSPNDAEIRMRLINRMEMEPEKVTLASLVDECNRLVNLRKDTSMVET
FT                 QEIKAVYQPTNQGNRFKPTDLPKTPCWLCGGVHFVRDCGYSSHRCSMCHQI
FT                 GHKDGYCACVRPSKQNGGHADKPQRKPAAQGQQGRPWKKDNRGSRSQKPYS
FT                 TRIVCCRQVQASSGRKFVEVAINGQQAHLQIDSASDITVISTATWRKIGSP
FT                 LVSSTSARASTASGSQLQLTSQFEAYVTLQGVDREGTIYVTNANLNILGID
FT                 WIERFGLWDVPISSVCQAIKMLKGTEIDELKVKYADVFSEQPSVCSCVDVQ
FT                 LSVKEGAKPVFRPKRPVAYGSLQLVEEELDRLEKRGIITPVTYSEWAAPIV
FT                 VVRKADKSVRICGDYSTGLNDVLEPHQYPLPTPDEIFASLAGGQVYSILDM
FT                 RDAYLLLNVAEPSRKYLTVNTHRGLYQYNRVPFGIKPAPGAFQQVIDTALA
FT                 GLPGVKAYLDDIIVTGRTIEEHKRNLEEVLRRLQKFGLRLKLEKCKFFERS
FT                 VKYLGHIVDQNGTRPDPEKTKAIAEMPAPTDVSTLRAFLGAINYYGKYIPH
FT                 MRNLRYPLDNLLKSSQTKFLWTAECQRSFETFKRILLSDLALTHYDPSLPI
FT                 VVSADASNVGLGACIQHVFRNGSRKTVYHVARSLTKAEANYGQIEKEGLAL
FT                 IFAVTRFHRMIFGRHFTLQTDHKPLLAIFGSKKGIPVYAANRLQRWAVTLL
FT                 NYDFDIEYVRTTEFGNADVLSRLINRCAKPEEDFVIAALTLEADLDEVLRV
FT                 TLNSCNLPLSFRTMQVATVKDAILQQVQKHLRSGWPQSKKQLRAEIRPYFE
FT                 ARESLSLVHDCILFGDRLVVPTIYRAKVLKLLHTAHPGIERMKALGRSYVY
FT                 WPNMSADIRDLVLRCSQCAAAAKAPARAIPQPWPKSTKPFQRVHIDYAGPY
FT                 HDQYFLVVVDSFSKWPEIVPTGTITTTATIAMLREIFCRFGMPEKLISDNG
FT                 RQFTADAFLDFCTQNGIEHVRTPPYHPQSNGQAERFVDTFKRALAKIHQRG
FT                 GNLRADLDTFLLNYRITPNRSAPDGKAPAELLFGNKLRTTLDLLLPPTNVN
FT                 NTLQLDQDKLRAFKAGDLVYAQQHTAGTTRWTPGVVTGRRGKVLYEVELDN
FT                 GRTISSHLNQLRKRLDQCQPKNRGPLPLDILLDTYELKRTKPAPVPGRPVV
FT                 APALPALPQQEDAGPRRSERTRKQPDRYGDAVYC"
XX
SQ   Sequence 4327 BP; 1001 A; 1305 C; 1206 G; 815 T; 0 other;
     ttttggcgac gaggccgtcc cgcgcgaata aaagttcggc ccgaaggtgc ggcgcgctag        60
     cgcaaaaatc gaggtgaact gtggattgag gttacgacac ctttctcgcc acgaggattc       120
     tgcacgatgc cagatactcc acctgcggcg ctggccccgg cacctgtaac ctcggggaac       180
     cagctcctgt tgaacctgct gcaggggcag cagaagctgc tggaagagct ggtcaaaaac       240
     tccgtcaccc agaaagacac gaaaaactcc aacgagttcg tcatggaatc cttctcgaac       300
     accatgagcg aattcgccta cgatccggaa aacgacgtca cttttgccag ctggtacagt       360
     cgctacgagg atctcttcag caaggacgcg tcagctctcg acggcgcaag caaagtccga       420
     cttctgctgc gaaaactgtc tcctgcggcc caccagcggt tcgtggacta catccttccg       480
     gctttgccga agcacaagac gttcgagcag acagtcgaca tcctgaaggc gatcttcggc       540
     gaggggatct ctacgttccg gaagcggttc cgttgtctcc agacggtgaa aagcggccaa       600
     gaggacttca tcagctactc cgcgacggtg aaccgccgtt gcgaggagtt caacatcggc       660
     gcgacgaagg cggaccagtt caagtgtttg gtctacgtct gtggcctaca gtcaccgaac       720
     gacgcggaga tccggatgcg gctgatcaac cggatggaga tggagccgga gaaggtgacc       780
     ctggcgtcgc tggtcgacga gtgcaaccga ctcgtgaacc tccggaaaga cacgtcgatg       840
     gtggaaacgc aggagatcaa ggccgtctac caacccacca accaaggtaa ccggttcaag       900
     ccgacggatc tacccaagac gccctgctgg ttgtgcggag gagtccattt tgttcgcgat       960
     tgtggctact cttcgcatcg ctgctcgatg tgccatcaga tcggccacaa agatggctac      1020
     tgcgcgtgtg ttcgaccgtc gaaacaaaat ggtggacacg ccgacaagcc ccagcggaag      1080
     ccagcagccc agggccagca aggacgaccc tggaagaagg acaaccgcgg atccagaagc      1140
     cagaagccgt attcgacgag gatcgtgtgt tgccggcagg ttcaagcaag ttctgggagg      1200
     aaattcgtcg aagtcgctat caacggacag caagcacacc tccaaatcga ttctgcctcc      1260
     gacatcaccg taatctcgac ggcgacgtgg cggaaaatcg gcagccccct ggtaagcagc      1320
     acaagcgctc gagcatcaac tgcctcggga tctcagctgc agctgacgtc acagttcgaa      1380
     gcctacgtga cactccaggg cgtcgatcga gagggaacca tctacgtcac gaacgccaac      1440
     ctcaacatcc tcggcatcga ctggatcgaa cggttcggtc tctgggacgt gccgatcagc      1500
     agcgtgtgcc aggccatcaa gatgctcaag gggaccgaga tcgacgagtt gaaggtgaag      1560
     tatgcggacg tcttctctga acaaccgagc gtgtgcagct gtgttgacgt gcagctcagc      1620
     gtcaaagaag gcgccaaacc ggtatttcgc cccaaacggc ctgtggcgta cgggtcgctg      1680
     cagctcgtcg aagaggaact ggatcgcctt gagaaacgtg ggatcatcac gccggtcacg      1740
     tactccgaat gggccgctcc gatagtggtg gttcggaagg cagacaagtc tgtgcggatt      1800
     tgtggcgact actcaactgg gctcaacgac gtcctcgagc cccaccagta cccattgccc      1860
     acaccggacg agatcttcgc cagcctggcc ggaggtcaag tttacagcat tctggacatg      1920
     cgcgacgcct acctgctgct caacgtggca gaaccgtcca ggaagtacct gaccgtgaac      1980
     acccacagag gcctgtacca gtacaaccgt gttcctttcg gcataaaacc ggcgccgggc      2040
     gcgttccagc aggtcatcga cacagcgctc gccggcctgc ccggtgtcaa ggcctacctg      2100
     gacgacatca tcgtcaccgg cagaaccatc gaggagcaca agcgaaactt ggaggaggtt      2160
     ctgcgtcgtc ttcagaagtt cggcctgcgc ttgaagctgg aaaagtgcaa gttcttcgaa      2220
     cggtcggtga agtacttggg tcacatcgtg gatcagaacg gcactcgacc tgatccagag      2280
     aagacgaagg ccatcgcgga aatgccggcg cccactgacg tctccacctt gcgggcgttc      2340
     ttgggggcaa tcaactatta cggcaagtac atcccgcaca tgaggaacct gcgatacccc      2400
     ctggacaacc ttctgaagtc gtcgcagacc aagttcctgt ggaccgccga gtgtcagcgc      2460
     agcttcgaga ccttcaagcg gattttgctg tccgacctgg ccctcaccca ctacgatccg      2520
     tcactgccga tcgtggtgtc cgccgatgcg tctaacgtcg gcctgggtgc ctgcatccaa      2580
     cacgtgttcc gcaacggttc aaggaagacc gtgtaccacg tggccagatc gttgacgaag      2640
     gctgaggcga actacggcca aatcgagaag gagggtcttg ccctcatctt tgcggtaacc      2700
     cggttccacc gcatgatctt cggccgtcac tttacgctcc aaaccgacca caagccgctg      2760
     ctggctatct tcggttccaa gaagggaatc cccgtctacg ctgcgaaccg tctccagagg      2820
     tgggcggtga cactgctcaa ctacgatttc gacatcgagt acgtgcgcac gacggaattc      2880
     ggcaacgcag acgtcctctc aaggctgatc aaccgctgtg ccaagcctga ggaggatttc      2940
     gtgatcgcag ccctgacgct ggaagcagac ctggacgagg tacttcgtgt gacgctaaat      3000
     tcctgtaacc ttcctctcag tttcaggacc atgcaagtcg caaccgtaaa agacgcgatt      3060
     ttgcagcaag tccagaagca tctgcgttcc ggttggccac agtcgaagaa gcagctccgc      3120
     gctgaaattc gaccctactt cgaggcccgc gaatcactct cgctggtcca tgattgcatc      3180
     ctcttcggag atcgcctggt agtgccaacc atctaccgtg ccaaggtcct caaactgctg      3240
     cacaccgcac accccggcat cgagcgcatg aaggctttgg gaagaagtta cgtgtactgg      3300
     cctaacatga gcgctgacat ccgtgatctg gtcctgcggt gctcccagtg cgctgccgct      3360
     gccaaagcac cagcccgtgc catccctcaa ccgtggccga agtcgacgaa gccgttccag      3420
     cgagtgcaca tcgactacgc tgggccttac cacgaccagt acttccttgt cgtcgtggat      3480
     tcgttctcca agtggccgga gatcgtacca accgggacca tcacaaccac tgcgacgatt      3540
     gcgatgctcc gagagatttt ttgtcgcttc ggaatgccgg agaagctcat ctctgacaac      3600
     ggccgccagt tcaccgctga cgcattcctg gacttctgta cgcagaacgg gattgagcat      3660
     gttcgtacgc cgccctacca cccacaatca aacgggcagg cagaaaggtt cgtcgacacc      3720
     ttcaaacgtg ccctggccaa aatccatcag cggggaggaa atctacgggc cgacctggac      3780
     acgtttctgt tgaactacag gatcaccccg aatcgaagcg ctcctgacgg caaagcacct      3840
     gctgagcttt tgtttggcaa caaactccgc accactttgg acctgttgct gccgcccaca      3900
     aacgtaaaca acacgctcca actggaccag gacaagcttc gggcgttcaa ggcgggtgac      3960
     ctcgtgtacg cacaacaaca taccgctggc acaacccggt ggacacctgg tgtcgtcact      4020
     ggcagacgcg gaaaagtgct gtacgaagtg gagctggaca acggtcgcac gatttcgtca      4080
     cacctcaacc agttgcgcaa gcggctcgac cagtgtcagc cgaagaatcg tggacctctt      4140
     ccgctggaca tcctgctgga cacgtacgag ttgaaaagga ccaaaccagc gccggtgccc      4200
     ggacgtcctg tggttgcacc tgcacttcca gccttgccac aacaagaaga tgctggacct      4260
     cggcgttctg aaaggacgcg caagcaacct gacagatacg gcgatgccgt gtactgttga      4320
     ggggaga                                                                4327
//
ID   Gypsy-27_CQ-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   AAWU01011305;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_CQ_;
KW   Gypsy-27_CQ-I; Gypsy-27_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-230
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 434-434 (2011).
XX
DR   GenBank; AAWU01011305; Positions  102744  102973.
XX
SQ   Sequence 230 BP; 63 A; 58 C; 58 G; 51 T; 0 other;
     tgttagggcc acgcgatgcg cccctaccga atgttggtgc cgtctagcac ggtacacgtc        60
     aacatgacag ctgccacaca gtgacagctg accggaagat tgtaagcgag agagagagaa       120
     gattgttctg taccattaat tgaccgagcc cgaactagcc ggacgtgcaa taaaaatcta       180
     attgtaaaac gtagtcgcgg tacttttctt ttgctcccgc gatcacagca                  230
//
ID   Gypsy-27_DAn-I repbase;    DNA;    INV; 5445 BP.
XX
AC   AAPP01011868;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DAn_;
KW   Gypsy-27_DAn-LTR; Gypsy-27_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5445
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01011868; Positions    6339   11783.
XX
CC   Positions [4542-5018] - Integrase core
CC   'ACTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           583..2124
FT                 /product="Gypsy-27_DAn-I_1p"
FT                 /translation="MAVRRSLENLVARMSSERDTTISCTICNDTNIQGEYV
FT                 ETACKHRFHRQCILSWLDNNETCPICRSACQRAQIESQNPTNAEVNVPPSR
FT                 TTRAVGNNNTTTGTIPRNRPNTRSHQRPNANVNPRTSLGATSRQDVTNPQA
FT                 NADANGISEERIHQLIASSMESFRINMAATLSEEVRTAFNSLSLNGIPREN
FT                 PEEPQLEWDFPAPLNHPRISLDSGARSNHCNRRNNNSPVREPVRDFSDKTA
FT                 NVISNWHIKFTGLLSDISVEDFIYRVNCLTSQSLNGNFVLLYKFGHLLFAG
FT                 PALNFYWRCHRSNEETTWFDLCTRLRERYKDQRTERDIKDTLRRRKQGRNE
FT                 SFDEFLDAMVAITDALREPLSDEEIVAEVRNNLRPELYHELLHVDTPSLSA
FT                 LRRECHKHEAFFGNNKYKQGNSQNNFRRTINAVSIEDQQDEVSDLETDSQK
FT                 VFAIKTTSMKCWNCDDPGHRYLDCLKPRRVFCYGCGALDTYRPKCIKCNPH
FT                 SGNGPQDIRNSHQRDVRK"
FT   CDS           2265..5384
FT                 /product="Gypsy-27_DAn-I_2p"
FT                 /translation="MKYRNSRSARRMREFWNSLKKSTMYKVSSLTRNGQDN
FT                 RPFVKLHIFDQSYYALLDSGANKSIIGGELAKKIVDSKQYIKRRGRVCTAD
FT                 GKRQEIYGSIVIPLVYNNFQNNFEFLIVPSISLDLICGVDFWDQFGISINY
FT                 EPNLPEVQAIETSNDKLSLSATDHRKLQTVIKLFPTSECDGLGLTKLVEHV
FT                 IDTKDTRPIKQRYYPISPAKEKLLCSEIDRMLELDIIEESPPSEWSSPIVL
FT                 LVKPGKIRFCLDSRKLNSVTAKDTYPMPHLEGLLSRLPAVRCVSKIDLKDA
FT                 FWQIALEEKSRPKTAFVVPNRPLYQFKRMPFGLCNAPQTMCRLMDQVIPYQ
FT                 LKSHVMVYLDDLLVLSSTFDEHLTHLTAVASHLRKAGLTINIVKSQFGLSR
FT                 VEYLGYVVGEGTLQPNNDKVRAISDYPVPSTQKQLRRFLGMTGWYQRFIPQ
FT                 YSTIVFPLTELLKGKTLTWNEEAQNSFQAIKDKLCSSPVLISPNYDKPFII
FT                 QCDASIYGVGGLLAQCDENGYERPISYMSKKLNKAQRNYSVTELECLAVVL
FT                 AIDRFRMYIEGHPFKVITDHASLSWLMKKNDLRGRLERWAIKLQGYQLTIE
FT                 HRKGSENVVADAISRSFEGEVNVANIDIEVWPEIDLSSDAFQSSEYKELID
FT                 KIVANNMPDYQVVDNLLYHRCNFSRGDLDQDDQSWKLVVPRELRTQVIKAA
FT                 HDQPSSSHCGMAKCLERIRRTFSWPGMVINVRDYIRQCEVCQTCKHPTQKM
FT                 KIPMGHQTKSERPFQRLYLDFIGPFPRTKKGHIGILIILDHFTKFTFLKAV
FT                 KKFTSEVVFKILKEDIFDCFGVPQVVVTDNGRQFKGNDFSAFLNRYGVQHV
FT                 CTAAYAPQSNAAERVNRSINAALRSYIQSDQREWDKYLSSINSALRNNLHQ
FT                 SIGMPPYLAVFGQNMITHGKDYQLLEKLGLMKEGSTTFNRIDQFCNIRGDI
FT                 QKYMQKAYQTNKRTYDLRSHHRTFEIGQIVTKRNFKLSNAADNFNAKLAPV
FT                 GVKVRVKKKCGQSLYLLEDLSGKELGTFHAKDIW"
XX
SQ   Sequence 5445 BP; 1837 A; 1039 C; 1092 G; 1477 T; 0 other;
     gataaaatgg cgcccactcg tggagccgac gttggagcca accgtggagc caacgtgggc        60
     aaacgtggaa cacgtggtta caaggtatat agtacaagat gaccatgcgt gaagcacgat       120
     atgtagatac aatccctcac aatttcaccc gttcccaaaa aaaaaaaaat cctcatggcc       180
     aaaagttcac aaattaaatc aagagatctt tggatgacac cgtttggtga tagccaatcg       240
     agtgaccaag actcacgttt attaaatata tctatttctt gtatatcatt aggctttaca       300
     atatcagttt tggatttttc gttctgaatt tatatcgatt cgacaccaac tgaatgtaat       360
     tcctaaaatt attttctgaa aacaattaga attcgagatt agctttgctg agcattctta       420
     gcaagactct cttttaattg tcagtttaca caatagttca atagacccaa atgaaaggaa       480
     tgagagatac cttagctgaa aagtgaagtt agcttgtctc ggagtaaaac cccaacaaca       540
     atgaaaaaca aataaataaa ttactaacaa aacattttta taatggcagt cagacgcagt       600
     ttagaaaact tggtagcaag aatgtccagt gagagagata ctacaataag ctgcactata       660
     tgcaatgata ccaatattca aggagaatat gtggagactg catgtaaaca cagattccat       720
     cgccaatgca tattatcgtg gttagataat aatgaaactt gtccgatctg tcgaagtgct       780
     tgtcagcgag ctcagattga aagtcagaat ccgacaaatg cagaagtgaa cgttcccccc       840
     tctaggacaa ctagagctgt tggaaacaat aacacaacta ccggaacaat tcctagaaac       900
     agacctaata cccgatctca ccaaagaccg aatgcaaatg taaaccctcg aacgagtcta       960
     ggagctacat cgcgtcagga tgtaacaaat cctcaggcta atgccgatgc taatggtatt      1020
     agcgaagaaa gaatccatca attgatagca agttctatgg agtcgtttcg tataaatatg      1080
     gcagcaacct tgtccgaaga agttcgtaca gcttttaata gcttgtcgtt aaacggtatt      1140
     ccgcgagaaa acccagaaga accgcaactt gaatgggatt ttcctgcacc cttaaaccat      1200
     cctcgtataa gtttagacag tggagcacga tccaatcatt gtaacagacg taataataac      1260
     tcgcctgtta gagaacctgt tagagatttc tcagataaaa ctgctaatgt tatttcgaat      1320
     tggcatatca aatttacagg gctgcttagc gatatctcgg tagaagactt tatttataga      1380
     gttaactgct taacatctca aagtttaaat ggaaattttg tattgcttta caaatttgga      1440
     catttgcttt ttgctggacc agcattgaat ttttattggc gttgtcatag atctaatgag      1500
     gaaaccacat ggttcgattt atgcactaga ttaagagaga ggtacaaaga tcaacgtaca      1560
     gaaagagaca ttaaagatac cttacgtaga cggaaacagg gccgaaacga gagtttcgat      1620
     gaattcttag atgccatggt tgcaattact gatgccttac gagaaccatt gtctgatgaa      1680
     gagatcgtag cagaagttag aaacaatcta agaccagagt tatatcatga gcttttgcat      1740
     gtggataccc catcattgtc agcgttgaga agagagtgtc acaaacatga ggccttcttt      1800
     ggcaacaata agtacaagca agggaattca caaaataatt ttagacgtac aattaatgcc      1860
     gtctctatag aggaccaaca agatgaagtt tcggacttag agacagacag ccaaaaggtg      1920
     tttgcaataa agacaacgtc catgaagtgc tggaattgtg atgatccagg tcacaggtat      1980
     ttagattgtc ttaaacctcg gcgtgtgttt tgctacggat gtggagcttt agatacctat      2040
     cgaccaaaat gtattaaatg taatccgcat tcgggaaacg gtccacagga catccgcaat      2100
     tcacaccaga gggatgtccg caaatagatt caaacgaaaa taaaacccta cttttaaatc      2160
     cagtccaacc agaactgtta gacatagaaa ttagtcctaa aattataaag ccgtatcaca      2220
     ttagacttaa agaatatgag ttaagaagat ctgaattgtt ttcaatgaaa taccgtaatt      2280
     cacgctcagc caggcgaatg cgcgaatttt ggaacagttt gaagaagtcc acaatgtata      2340
     aagtctcgag ccttacacga aatggtcaag ataatcgtcc atttgttaag cttcacattt      2400
     ttgatcaatc ttactatgct ttattagata gtggggcaaa caaaagcatc ataggcggag      2460
     aattagcaaa aaaaatcgta gattcaaagc aatatataaa acgaagagga agagtatgta      2520
     cagcagatgg gaaacgtcaa gaaatttatg gttcaatagt aataccattg gtatacaaca      2580
     actttcaaaa caattttgag tttttaattg ttccttctat ttcactagac ctaatatgtg      2640
     gagttgactt ttgggatcaa ttcggaattt ctatcaacta tgaacccaat cttcccgagg      2700
     tgcaagcgat agaaacgagt aacgacaaac tatctttatc agccacagac caccgcaagt      2760
     tacagactgt cattaagcta tttcctacat ctgaatgtga cggattaggt ttaacaaagc      2820
     tggtagaaca cgtaatcgac acaaaggata cgcgtcctat caagcagcga tattatccta      2880
     tatcgccagc caaagagaaa cttttgtgta gtgaaattga cagaatgtta gaattagaca      2940
     ttatagaaga atcacctcca tcggaatggt cttcaccgat tgtcctatta gtaaaaccag      3000
     gaaagataag gttttgtctg gattcaagaa aattgaatag tgttaccgca aaggatacgt      3060
     atcctatgcc acacttagaa ggtctattga gtagactgcc cgcagttcga tgtgtgtcaa      3120
     agatcgattt aaaagatgcg ttttggcaaa ttgccttgga agaaaaatct cgaccaaaaa      3180
     ccgcttttgt tgtcccaaat cgaccgctat atcagtttaa gcgcatgcct tttgggttgt      3240
     gcaatgcacc tcaaacgatg tgcagattaa tggatcaggt tataccatat caattaaagt      3300
     ctcacgtgat ggtgtaccta gacgacttat tggtgttgtc ttctacgttt gatgaacacc      3360
     tgactcactt aaccgcagtt gcttcccatt tacgcaaggc agggttgacc atcaatatag      3420
     ttaaaagcca attcggctta tctagagtgg aatatttagg atatgtagta ggagagggca      3480
     ctcttcaacc gaacaacgac aaagtccgtg caatatcaga ctatccagtc ccttcaacgc      3540
     agaaacaatt acgccgattc ttgggcatga ccggttggta tcagaggttc ataccacagt      3600
     attcgacaat tgtttttcca ctcacagaat tattgaaagg aaaaacttta acatggaatg      3660
     aagaagcaca aaactctttc caagccatta aagacaaatt atgctcatcc ccagtattaa      3720
     ttagtcccaa ttacgacaaa cctttcatta ttcagtgcga tgcatccatc tatggagtag      3780
     gaggcttatt ggcacaatgt gacgaaaacg gatacgaacg accaattagt tacatgtcca      3840
     aaaagcttaa caaggctcaa cgaaattatt cggtaaccga attagagtgt ttagcggtag      3900
     ttttagccat tgatagattc agaatgtaca tcgaaggaca ccccttcaaa gtaatcaccg      3960
     atcatgctag tttaagttgg ttaatgaaaa agaacgactt gagaggtaga ctagaaagat      4020
     gggccataaa actgcaagga taccagttga ccatagagca ccgaaaggga agtgaaaatg      4080
     ttgtagccga tgccatctct cgatctttcg aaggagaagt taacgttgcc aatatagaca      4140
     tcgaagtatg gcccgagata gatctttctt ccgatgcgtt ccagtcttcg gaatataaag      4200
     aacttatcga caaaatagtt gcaaataaca tgcccgatta tcaggtagtt gacaacttgc      4260
     tctatcatcg ttgtaacttt tctagaggcg atctggatca agacgatcag agctggaaat      4320
     tagtagtccc aagagaattg aggacacaag ttattaaagc cgctcatgat caaccatcct      4380
     cttcgcattg tggcatggca aagtgcttag agagaattcg cagaactttc tcatggccag      4440
     gaatggttat aaatgttcgc gactacattc gccaatgtga ggtatgtcaa acgtgcaaac      4500
     accccaccca gaaaatgaaa attccaatgg gacatcaaac taaaagcgag agaccttttc      4560
     agagactata tctcgatttt attggtcctt ttcctagaac taaaaaagga catataggaa      4620
     tactcataat tctagatcac ttcacaaaat tcaccttctt aaaggcggta aagaaattta      4680
     catctgaggt agtttttaaa atccttaaag aggatatttt tgattgtttt ggagttccac      4740
     aggttgttgt tactgacaat ggtagacaat ttaagggaaa cgatttctca gcatttttga      4800
     atcgctacgg agttcaacat gtatgcacgg cagcatacgc tcctcagtcc aacgcggcag      4860
     aacgagttaa tagatctatt aacgcggcgt taagatccta cattcagtcc gatcagaggg      4920
     aatgggataa gtacttgagt agcattaata gcgccttgcg taataatcta catcagtcca      4980
     ttggaatgcc cccatattta gcagtttttg gacaaaacat gattactcat ggtaaagatt      5040
     accaactttt agagaaattg ggattaatga aggagggatc cactaccttt aatcggatag      5100
     accagttttg taatattcga ggcgacattc aaaaatatat gcagaaagct tatcagacca      5160
     acaaacgtac ctatgatttg cgaagccatc acaggacatt tgaaattgga cagatagtga      5220
     cgaaacgaaa ctttaagctt agcaatgcag cagataattt caatgctaag ctagcaccag      5280
     ttggagtaaa agtccgtgta aagaaaaagt gcggacaatc actgtattta ctagaagact      5340
     tgtctgggaa agaattagga acctttcacg ctaaagatat ttggtaaagt tcaccctttt      5400
     ttcagctttg agccgaaaaa tagatttttc attctaacct gtggg                      5445
//
ID   Gypsy-27_DAn-LTR repbase;    DNA;    INV; 1657 BP.
XX
AC   AAPP01011868;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DAn_;
KW   Gypsy-27_DAn-LTR; Gypsy-27_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1657
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01011868; Positions    4682    6338.
XX
SQ   Sequence 1657 BP; 519 A; 327 C; 320 G; 491 T; 0 other;
     tgtgagggtg actgttttga gcaggtttta agacaaaaaa attgcagtcc gtcccattgt        60
     ccagattcca gtggtctcca aaaatgcatg cttgtcatcc ctttcattcc catgcaatta       120
     attgaacccg ttaaagctcc ctggaagatg catattcaag taggcttggg ttaggtttca       180
     aagataagcc ccgcttcact ttcgaaccac acttggactt tcgcggatgg tttattaaga       240
     ccaacgattt ttactagact ttacgctaat cacgtggtat tacgtcatta cacgtgctcc       300
     ccaataaata tatttaaatc accagtgaat tattgcctct tagaccaaaa tcagtccaaa       360
     ccagtttgaa gtgcaattga gagttgcagt ttaaattctt caaattggct cggccaaatc       420
     aggtgagaaa gaaaattgca attcttgtgt cggttcttac aaccgtgtat ttcacagtgc       480
     catggtggcc tggtatttgg ccgagcttat acaaacgtat attagcgaag aaagaaaata       540
     agaagccgat agaagaaaat aatgctgcag aggatcgatt tggagaaaat gtaacggagg       600
     ttatataaaa ctcacccccc ctgcacgtct ctgatattac ataaggaaca cgaggtttcc       660
     atgaggcttg gaatcaaccc cccccttttc tcccgcctaa acgttaacac tctcgaggat       720
     tggagtctgc tctctaccat gctgcggcca tagatccgtt atttccccaa gataagaatc       780
     tataacgaaa atcgctaact tgcgaagcac atagttttgt ttgccaaact agctctgcca       840
     ctgtagaaaa tgtaaaatgg catagcattt tgaatcatta ttgttaattt ctattacttt       900
     taagttttcc aaaattttgc cttcgtaatt taatcatgta ccacatccct taatatttac       960
     atatatatat atcttattat gtagtaagac tttgatttag aatatacata tagctgcatc      1020
     ggaagtcgac aggcctgctg acatcgaggg acaagctgta agtacggcat agccgcaaca      1080
     atttgaagaa tatgtcttag agtgaaatat aaacaagata tatgtatatg aatattaagg      1140
     atggagtaaa gtcagttcaa ttaaaaatca taaagtagat taaattcctt aattttgtaa      1200
     attcaaaaca acgtaaattc ttaaatggat cgctgtaagg tttttgcttt gaactaataa      1260
     tattgagtta ggattagaat gttattatat taggaataat gaacaaaacg ctgaaatgcc      1320
     catgttgaat atattgaagt aatgaagata taatgaatcg cgtctaaata tttcagtggg      1380
     gtttccagag acaagctaat gcaacatggg ttgcccaatg ataatggtgc aacaaggaag      1440
     ggcgggtaaa gaggagatct attacacctg agttctccaa gctggtattc tcattcccta      1500
     ttcccccaca actttggcca ccccctttat ttagcactgt cgaagacttc ttttatttgg      1560
     taaccctgat ttggggaagc acaagaaccc tccctctggc cctgagctag gccggcaata      1620
     gacagtgcgt gctcccgatc agaaccagga cgttaca                               1657
//
ID   Gypsy-27_DBp-I repbase;    DNA;    INV; 6528 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6528
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 696-696 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..1816
FT                 /product="Gypsy-27_DBp-I_1p"
FT                 /translation="MPIIEKERVESGRKIRRSEEFLRNRSAEIMSPAVTRS
FT                 QGQQGNQSMAGLEKVSPTGVMDERQTVHQAMAASIEAEVARGYDQGSSGRG
FT                 AIPKVQPEVPSEIRSAVNTALFQAQQTYESGKHSEFNAFKEQMQADMMLFM
FT                 KDINDCMASWRKDFESQWMSQQQQQPAESHSMKPPERQFQQPPPCQPTARC
FT                 SDRGWQGPSSAPPTGXKMQRAEARADTIRQVVPLPEDYSKPPPNIYGKQDQ
FT                 SRPPERAASRSGWEARGYQPPGQALSLEMEPEWDASYVPXAMNQAESLGQT
FT                 RGSSQARMEVGHLRKWGLLFDGSPRSMPVSEFVFRLEHLQRSYRIPWSEVL
FT                 REFHVLVEGPAREWYWMYIRTNGRTDWPYLRYALQQQFQSHRSNFEREYEL
FT                 RERKQRSGESVEDYIQMMLTLRARLETPVSDFELIKIIKMNLRERISKIVY
FT                 PIHVTNLEQLRHECHDAERMLATRWSRQAAEGEHQRFLLSSEGGRAGRSAG
FT                 GRGRLARGG"
FT   CDS           1946..5350
FT                 /product="Gypsy-27_DBp-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MWHSRSRVAEMSKVSVGKRGKEHVPGRGATFQPICIK
FT                 IEADPQTLGNKKISSVKHINQILVNINKQSPTVERSDGNPISARGADYKEG
FT                 KPRCFQEDPVTPRIERARRRNRQRRTERQRICAAIRAAVSCDNRPFAIVEV
FT                 EGNSIEGLLDSGASVSLLGEGCLELIEKLGLRREKTRAIMQSAGGAKHQVL
FT                 GKVYPEIRYQGQTHRIPILLCPSLKQKLYLGVDFWRKFHIAPEVVGVESLE
FT                 NVETEFHSKGEPVEPHALTNEQQERLDKVKEGFLSYENQGLGLTTMEQHTI
FT                 QLVEGAVPVKERFYPVSPAKQQLLFAEVDEMLRLGVIELSESPWNNRTTLV
FT                 QKPGKNRLCLDARKLNALTVKDAYPLQNIESILSRVDDTIFISSIDLKHAF
FT                 WQVELDEKSRPYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLMDRVIPQRL
FT                 RDRVFVYLDDLLMISKTFEEHCELLAEVGRCLRRANLTIGLQKSKFCFKYL
FT                 RYLGYVLGDGALKTDPRKIAAIKEIEAPKNVRQLRSFLGTANWYRRFIQNF
FT                 SEISAPLTDCLKRGKGLQWTPEAEVAFQKLKQALTCAPVLTHPDFRKHFWI
FT                 QCDASHVGIGAVLFQKDDNKAERPIAFFSAKLRGAQLNYSVTEKECLAAVK
FT                 AVERFRPYIEMMPFTILTDHASLKWLMSFKNLEGRLARWFLALQPYQFNIE
FT                 HRKGKDNVVADTLSRPNDVEELSLLNMETTAFASEEYLERMKLVKEQGDRF
FT                 PDLRVEEGLLFKKTRFCREDSEEFDWKLWIPEELTSTLVQQAHEGEMALHG
FT                 GIRKTLARLQRMYYWPNMVLQVKEWVTSCISCKENKHTTHITRPPMGKEVE
FT                 TDRPLQKLYLDFLGKYPRSRRGDTMLFIVVDHFTKFVWLKAMPKATSVAVA
FT                 GFLREHIFTQFGVPEIIHTDNGRQFISKEFEDMMQLYGITHMKTGRYAPQA
FT                 NASERVNQSVLAAIRVNIGEDHARWDERLPEVQAALRAASHCSTGVSPYFA
FT                 MFGQHMFSNGGDYQLARKLKALNESEIQQLRRXEKQQVQRSGIKERIHQAY
FT                 EEAARRYNLKTKEVKYLPGQEVFKRNFVLSNLRKNINAKFCKKYVKCRVCK
FT                 VLGNSLYALENLRGQPIGVFHAKDLKQ"
XX
SQ   Sequence 6528 BP; 1943 A; 1342 C; 1834 G; 1386 T; 23 other;
     gtgttccgtc ckagacaatt tgtkgctgtg aacggaaaag ggataaatga atgttttttt        60
     tggtatagaa ttaagtaaag taaatcgaak gaagcagcac aagagacgag ataggaggaa       120
     atctcacaga tctgaggagc tggatgaatg cgttttcaca accccccttw aacagaaatt       180
     caagaagcag twaaaaaaaa aaaagaaagg aagaatagaa aatkaagwka cccaaaaama       240
     aamaagaaaa tagakaatag aaataagtta aacgagttaa attaagatta tttaggagga       300
     aatgcccatc atagaaaaag aaagagtaga gtcaggtaga aagataagaa ggagtgagga       360
     gtttttgcgg aatcggagtg cagaaataat gagtccagca gtgaccagat ctcaaggcca       420
     acagggaaac caatccatgg ccggactgga gaaggtatcg cccacaggag ttatggatga       480
     gcgacagacg gtgcatcaag ccatggccgc ctccattgaa gccgaagtag caagaggcta       540
     cgatcaagga agcagtggca gaggagcgat accgaaggtc cagccggagg ttccgtcaga       600
     gattcggtcg gcagttaata cggcactgtt tcaggcacaa cagacgtatg aatcgggaaa       660
     gcacagtgag ttcaatgcat ttaaggagca aatgcaggcc gacatgatgc tgtttatgaa       720
     ggacataaac gactgcatgg catcgtggag gaaggacttc gagagccagt ggatgagtca       780
     acagcagcag cagccggcag agtctcattc gatgaagcct cccgaacgtc agtttcaaca       840
     gccgcctccg tgtcagccga cggcaaggtg ttccgaccga ggatggcagg ggccatcatc       900
     tgcaccacca accggacmaa agatgcagcg cgcagaagca agggcggaca caataagaca       960
     ggtggtcccg ttgccggaag actattcaaa gccaccaccg aacatatacg gcaagcagga      1020
     tcagtcgagg cctccggaac gagccgcgtc caggagcggc tgggaagcac ggggttacca      1080
     accgccgggt caagcgttgt cgctggagat ggagccagaa tgggacgcgt catacgtacc      1140
     ckcggcaatg aaccaagccg agtcgttggg gcaaacgcga gggtcaagcc aggcccgaat      1200
     ggaagtggga catctccgca aatggggctt gttgttcgat ggcagtccca gaagcatgcc      1260
     ggtctcggag ttcgtgttcc gactggagca cctgcagagg tcktatcgca ttccgtggag      1320
     cgaggtacta agggagttcc atgtgttagt ggaaggtcca gccagagaat ggtattggat      1380
     gtacatacgt accaacggga ggacggactg gccatatctg cggtacgcac tccaacagca      1440
     atttcaaagc cataggtcaa actttgagag ggagtatgag ctgcgagaaa ggaaacaaag      1500
     atccggagag agtgtggagg actatatcca gatgatgttg acgctgaggg caagattgga      1560
     gacaccggta tccgattttg agctaataaa aataataaaa atgaacctga gagagagaat      1620
     atccaagatc gtatatccta ttcatgtcac caacctggag cagctacgcc atgagtgtca      1680
     cgatgcggag aggatgctag ccactcgatg gtctaggcag gcggcggagg gtgagcatca      1740
     aaggtttctc ctatcgtccg agggtggaag agctggaaga tcagcaggag gacgaggacg      1800
     gctggcccga ggagggtgaa gtcgaagccc tgcaccgaca agagaagtcg agggataagt      1860
     cgaccctgag ttgctggaac tgcaacgagc gggggcacac attttgggag tgtgagtcaa      1920
     cggtgcgcaa catattttgc tacaaatgtg gcactcccgg agtcgtgttg ccgaaatgtc      1980
     caaagtgtca gtcgggaaac gggggaagga gcatgtcccg ggccgaggag ccacgttcca      2040
     acccatttgc atcaagatag aggccgatcc gcagactcta ggaaataaga aaataagtag      2100
     tgttaagcat attaatcaaa tattagtaaa tataaataag cagagtccaa cggtagaaag      2160
     atcggatggg aatccaattt cagcacgagg agcggattac aaggagggta agccgcggtg      2220
     tttccaagaa gacccagtaa ctccaagaat cgaacgtgcc cggcgaagga atcggcagcg      2280
     gaggaccgag agacaaagga tatgtgcggc gattcgagcc gcggtgagct gcgacaacag      2340
     gccgtttgcg atcgtggaag tagagggaaa cagcatcgaa ggcctgttag acagtggtgc      2400
     atccgtcagt ctcctcggtg aaggatgtct ggaattgata gaaaaattag gattgagacg      2460
     ggaaaagacg cgagcaatca tgcagtccgc gggcggtgca aaacaccagg tgcttggcaa      2520
     ggtttatccg gagataagat accaaggtca aactcaccgc atcccgatcc tgctttgccc      2580
     ctctttgaag cagaaactgt acctgggcgt agatttttgg aggaagttcc acatcgcgcc      2640
     cgaggtcgtg ggggtcgagt cgttggagaa cgtggaaacc gagttccaca gcaaagggga      2700
     accagtagag cctcacgccc taactaacga acaacaggaa cggctggata aggtaaagga      2760
     aggtttccta tcatatgaga atcaagggtt aggactcacc acaatggaac agcacaccat      2820
     acagctagta gagggggcag tgcccgtcaa ggaaaggttt tatccagtgt ccccggccaa      2880
     gcagcaactc ttgttcgctg aagtggacga aatgttgaga ctcggagtca tcgagctgag      2940
     tgagagtccg tggaataacc gcacgacgtt ggtgcaaaaa cccggcaaga acaggctgtg      3000
     tttggacgca cggaagctaa atgcattgac ggtgaaggat gcctacccgt tgcagaatat      3060
     agagtccatc ctcagccggg tcgatgacac gattttcatc agcagcatcg acctgaaaca      3120
     tgcgttttgg caagtggaac tggatgaaaa gagtcgtccg tatacggctt tcactatacc      3180
     tggtaggccg ctgtatcagt tccggaggat gccttttggg ttatgcaatg cggcgcaaag      3240
     actatgcagg ttgatggata gagtcatccc acagagactc agagaccgag tgttcgtata      3300
     tctggatgac ctgttaatga tctcgaagac ctttgaggag cattgtgagt tgctagcaga      3360
     agtgggaaga tgcttacgga gggcgaattt gaccatcggg ttgcagaagt caaagttctg      3420
     ctttaaatac ttgcggtatt tagggtatgt tctaggagat ggcgctctga aaacggatcc      3480
     acggaagatc gcagccatta aagaaattga ggccccgaaa aacgtccgac agttgcgcag      3540
     tttccttggc acngcgaatt ggtacagaag gttcatacaa aatttttccg aaataagcgc      3600
     tcctttaacc gattgcctga aaagagggaa agggctacag tggacacctg aagcggaggt      3660
     agcgttccag aagctaaagc aagcactgac ctgtgcgccg gttttaaccc accctgactt      3720
     ccggaaacac ttctggattc agtgtgatgc cagtcatgta ggtatcggcg cggtgttgtt      3780
     ccagaaggac gacaataaag cggaacggcc gatcgccttc ttttcggcaa agctgagagg      3840
     cgcacagctg aattacagtg taaccgagaa ggagtgtctg gctgcagtca aagctgttga      3900
     gaggttccgt ccctacatag agatgatgcc gttcaccatc ttgacggatc acgcgagcct      3960
     taagtggctg atgtctttta aaaatctgga agggagactg gccagatggt ttctagcgct      4020
     acagccttac cagtttaaca tcgagcatcg gaaaggaaag gacaatgtgg tggctgatac      4080
     tctttcgcgc cccaacgatg tagaagagct gagcctgttg aacatggaga cgacggcgtt      4140
     cgcaagtgag gagtacctgg aaagaatgaa actagtaaaa gagcaaggag atcgattccc      4200
     agacttacgg gttgaagaag gcttactttt caagaagact cgtttttgcc gggaggacag      4260
     cgaggagttc gactggaaat tgtggatccc cgaggaacta acaagtacat tagtacaaca      4320
     agcncatgaa ggggagatgg ctctgcatgg ggggatccgg aagacattag cgaggctaca      4380
     gcgaatgtac tattggccga acatggtgtt acaggtgaaa gaatgggtta cttcctgcat      4440
     cagctgtaaa gaaaataagc acaccacgca cattacgaga ccgccgatgg gaaaagaagt      4500
     agaaaccgac agaccattgc agaagttata cttggatttc ctcggaaaat acccccgatc      4560
     caggcgcggc gacaccatgc tgtttatagt ggtagaccac tttacaaagt ttgtctggtt      4620
     gaaagctatg cccaaagcaa cgtcggtggc ggtggccgga ttccttagag aacatatttt      4680
     cacgcaattt ggagtgccgg aaatcataca cacagacaat ggcaggcaat ttatctctaa      4740
     ggaatttgag gatatgatgc agctgtatgg gataacgcac atgaaaacgg gcagatacgc      4800
     accgcaagca aacgcatccg agcgcgtcaa ccagtcggta ctcgcggcca ttagggtgaa      4860
     tattggcgag gatcatgccc gatgggatga acggttaccg gaggtgcagg cggcactgag      4920
     ggcagcgtca cattgctcga caggggtgtc cccatatttc gcaatgttcg ggcaacatat      4980
     gttttcgaac ggtggagatt accagctggc ccgaaagcta aaggcgttga acgagtcgga      5040
     gattcagcag ctacgaaggt mggagaaaca gcaagtccag cgttccggga taaaggaacg      5100
     tattcaccag gcctacgaag aggcggcgcg gaggtacaat ttaaaaacca aggaagtcaa      5160
     gtacttaccg ggacaagaag tttttaagcg gaactttgta ctcagcaacc tccgcaagaa      5220
     catcaacgcc aagttctgca aaaaatatgt kaagtgtagg gtatgcaaag ttctgggcaa      5280
     ctcactgtac gcgctggaga acctacgagg gcaaccgata ggcgtctttc atgccaaaga      5340
     tttgaaacaa tgagggcccg gctagctcca gtataaacgg aatctcaggg cgtggacgaa      5400
     gcctacgttg ggctaagcat caaagcagtc gacacttttc ttccactcct gttatcctcg      5460
     caagctaagg aaaccgtagt gtgctgttag gtgtcgatag tcgctgcaag cggcagagat      5520
     ggcacgacgg ggctagggat ggcacatcgg ggcaaattga atggacccga gaaagaagaa      5580
     gtcaggacga accgggcggg atccaaccgc tgtgagttga aaggaaagcc gggatcgagg      5640
     agacaaagaa aaaaaggaaa gagaacggca acaggaggag gacacgtggg aaaaaattaa      5700
     tactaaaaat tccaataatt ttctacggag ctctaggcgc cagtacattt cgaagaaaga      5760
     ggacttggag ctcgtcaacc aactggagcc acccgaaggc gaaaatttct gcacagaagg      5820
     aaattggtca cccttcccgg gtggcccaca ggtttttttt gagaatttaa atttgaaaag      5880
     tacctgaaac cctgcctgat cctwgcttag attatatact tatttattta aattatttat      5940
     ttgttattta tttttttgta attaatctat taactgtatt cgtcccaagg tgccttggtt      6000
     aggtgttagg ttaattcatg tttaatattt aagagtacta tccactaaaa atataaaaga      6060
     tgaaataaaa aatattaaat taaattatca attcaaatga aatgtgagtg agaaaaaaca      6120
     taaagggggg gaagtgaaaa cgcgtaatcc agaatgtgag agtgcagatc gataaagggg      6180
     agtttaggga aggcctgtga tgatcccacg gatccaggat ttggaccaag gaatgggaag      6240
     ccttcgatcg gaaatgaccc aataccgtag tgctctcktg tccgctgtgt ttttttgttt      6300
     tgctgatttg atgaatkgtg taacgtagtc gtttttactt ktgcttgttt ggaatttatt      6360
     tatttatttt ttgttgaatt agtgtattat tatttattca ccgtatctat ttttttgtga      6420
     ggctgtcttt tgggkttttc cgggtgttcc catccctgta ggtgttaacg cgtgctagcc      6480
     ggcgaagtga aaaatccaaa caagagaaga aacaggcaga cccttaca                   6528
//
ID   Gypsy-27_DEl-I repbase;    DNA;    INV; 5859 BP.
XX
AC   .
XX
DT   20-OCT-2011 (Rel. 17.04, Created)
DT   01-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DEl-I.
XX
NM   Gypsy-27_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5859
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 465-465 (2012).
XX
RN   [2]
RP   1-5859
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           865..2271
FT                 /product="Gypsy-27_DEl-I_1p"
FT                 /translation="MSKYFLRSKGKMVDRTPPPGNPRKEHQEGDDDSWNLP
FT                 IASKVLPSEITSAVNVALAQAQETQRGGMMESISRSLQEEIRRGFMEMMIA
FT                 VTEAMGPLKQQVELLQMQEVAKDGSDSRHSSRQDEKDRKSTGTKPKYSTGV
FT                 PPASPHTQRPQSLDAKQYSAQNEPIQRSPRFEDGRALRQQAEREAEGRFTR
FT                 WGRVEKWEIYFDGDPNKMMVEDFVFRVEFLRRQSRCSWDEVLDSFHHLVRG
FT                 KAAEWYWQFVRERPPEVWEDLKDEIVARFRGVGGEFERLRALHERRQRPGE
FT                 SVEDYFGAMRRLSTRLTQPMSESEMIRVIKKGLAEDIARYVYAVRVRSVEQ
FT                 LREECLEVEDTFVRREPRPAYRPSQKFSSSGKRVXEIIPEPESQDKEEEVI
FT                 IEEAHLLTKQRICCWNCGQFDHGFRDCVAKERRIFCYRCGKPEHFTPTCPN
FT                 CSGNGRPSVTKAGEQRLGQKPAWK"
FT   CDS           2190..5609
FT                 /product="Gypsy-27_DEl-I_2p"
FT                 /translation="MSELFGKRPTKRDESRRATLGPETCVEVDDKEEENYQ
FT                 YIINKQNRLGINKLRFLPAEERIKRYIEVRNRIFDARQLEGMRGVSRRLLK
FT                 TRSRFKKRRQTRQEVAEAIQRGTRTDPRVFAEVTIHGRKIAGLLDTGASVS
FT                 LLGKDSRELMAKLGVEMDRYVSVVKTAAGEDRSIIGKIKLPVGYKGIVKDI
FT                 LFYICPYLEQSMYLGIDFWRSFELAPAVLGDENSESSQAQVAEVKMSQISH
FT                 YAEDRRQETEVEAWDLGXNEAEELENVKKEFLTYEEAGLGTTAAEQHQIQL
FT                 VEGAVPFKDRCYPLSPAMQEVVWKEVDKMLELGVIEVSDSPWSNRTTVVRK
FT                 PDKNRFCLDARKLNQLTVKDAYPLPSIEGILSRIDQTYYISSVDLKFAFWQ
FT                 IKLEPESRKYTAFTVAGRPLYQFVMMPFGLCNAAQRLCRLMDQVIPTQLRS
FT                 NVFVYLDDLLVIAPDFQTHLRYLRLVAQCLKRANLTIGLKKSKFCFKSLKY
FT                 LGFIIGGGKLQMDPERVLAIQKIPDPKNVKELRSFLGTAGWYRRFIKNFAS
FT                 IAAPLTDALKKHPRGKFSLTPEAVEAIKHLKMALTTAPVLVHADFKRPFFI
FT                 QCDASNYGVGAVLFQLDDENSERPVAFFSSKLNKHQILYSVTEKECLGAVL
FT                 AVEKFRPYVELMPFTVITDHASLKWLMSLKDLNGRLARWSLRLQSFNFKIE
FT                 HRKGTENVVADTLSRCIAELSFDLSDAIGFQTTEFESAEYQELREEISRNI
FT                 ATLPDLRVDGGLVFKRTTFEQLDDQVEGSIWKLWIPAGITSTLIANAHEDH
FT                 KAAHGGMKKTLHRLKRHFYWPAMTTQVREYVRNCTKCKESKPPNYRCQVGI
FT                 GQEVVTERPFQKIYIDFLGKYPRSKKGQAYIFVVVDHFSKFTFLKAMKEAS
FT                 VGKVVEFLVHEVFYKFGVPEVIHSDNGKQFVSKIFQDMITAFGIXHMRTAV
FT                 YSPQSNAAERVNRTILAAIRTYLENDHRDWDLYLPEIEVSIRDSVHEATGV
FT                 TPFFAVFGQQMFLNGNCYKLARKLQSLTEHQITTLDPVDKRQLIRDHIREN
FT                 LHQAYERSSQRYNKRARVFHAKPGQEIYRRNFTQSNFGKMYNAKFARKYVK
FT                 CRVVRPIGNNAYELEDLGGKPVGIFHAKDLKM"
XX
SQ   Sequence 5859 BP; 1747 A; 1185 C; 1572 G; 1344 T; 11 other;
     atagatggcg cccaatttaa aggcaggagt ggattcgctg atcctgtcat ccgaaaggtt        60
     ggaaaggatg cgaattgcac accggtggga attataaata accagccgag aggtaggatc       120
     tcggaaggga cttggtgatt cgggtacctc ggtgaccgat ggcctatgaa ggacctgatg       180
     gtcggttcak agtagcgcgg tgccggggga tctggaagca aagatacccc aaagtaaatg       240
     taattttttt ttgttgaaag agattggtac gtatctgacg aacggaagag ggtgctcggt       300
     aagggtggtt cggcactagc aggaaatawt tcttcggcta gttagcgact atcccgatgc       360
     ctggtgtgct actcgagcgc ctggaaaata aagcagaata ataaccggaa tcagawatag       420
     tccaaatagg gaaaacttcc cttacttacc cgtgatgagg tcaggatgtg gaatatcgac       480
     tgtgagtggc ccgtggggac cagagaagtc ggccacgcgt tgcactcatg gcggctcttc       540
     actcctagaa caatcattta gtgatgtaag taaggggaag twtagataat agaatggcga       600
     gcgcccttga cacctagtct tctggggaag atgggatggt caacagcgct caccgagaaa       660
     cttgtgctgg aaattgaaga cactgaaatc cggggtgaag ttggctccgg tgaatgttga       720
     gtttttccct ccttgtkgta gttgtgaaat tttgtttgag ttgtcattgt gtgttgtgga       780
     tgcgcagccg gttcaaaact ataaaaaaaa gtaaaagata aatattagta aaacatctaa       840
     gtagagatag attaggaaaa gttgatgagc aagtattttt taaggtcaaa ggggaaaatg       900
     gtagacagga ctcctccgcc agggaatcct cggaaggagc atcaagaagg agacgatgac       960
     agctggaatt tgccaatagc atcgaaggtc ctgccatcgg aaatcacatc ggctgtcaat      1020
     gtggccttag cccaggctca ggagacgcaa cgaggaggaa tgatggagtc cataagccga      1080
     tctttgcaag aggagatccg gcgcgggttt atggaaatga tgattgccgt taccgaggca      1140
     atgggaccat tgaagcagca agtagagttg ctacagatgc aagaagtagc gaaggacgga      1200
     agtgatagca ggcatagcag caggcaggac gagaaggaca ggaagagcac tggaactaag      1260
     ccaaaatatt ccacaggcgt acctccagct tcgccgcata cacaacgtcc gcaatcccta      1320
     gatgcaaaac agtattccgc gcagaacgaa cccatccaga gatctcctag gttcgaggat      1380
     gggcgagcct tgcgtcagca agcggaaagg gaggccgagg gtagatttac aaggtgggga      1440
     cgagttgaaa agtgggagat atacttcgat ggagacccaa acaaaatgat ggtggaagat      1500
     tttgttttcc gggtcgagtt tcttcgaagg caaagtcggt gttcctggga tgaggtcctc      1560
     gacagttttc atcacctggt caggggcaaa gcggccgagt ggtattggca atttgttcgt      1620
     gagcgaccgc ccgaggtttg ggaagatcta aaggacgaaa ttgtggccag gtttcgaggc      1680
     gtcggtggtg agtttgagcg gctacgcgct ctccatgaac ggcgacaaag acctggggaa      1740
     tcagtcgagg attatttcgg agccatgcga cgattatcka ccagacttac ccaacccatg      1800
     tcggagtccg aaatgatccg ggtgattaag aaaggactcg ctgaggatat cgctcggtat      1860
     gtttacgcag tcagggtacg aagcgtggag cagcttcgcg aggaatgctt ggaagtggaa      1920
     gacacttttg tcagacgaga gcccaggcca gcataccgcc cgtcgcagaa gttttcgtcc      1980
     tctggaaaga gagtcgawga aatcataccg gaaccggaat cgcaggacaa ggaagaagag      2040
     gtgattatag aggaggctca cctgttgacc aagcagagga tatgttgttg gaactgcgga      2100
     cagtttgatc acgggttccg cgattgtgtg gccaaggaac gcagaatctt ttgctaccgc      2160
     tgcgggaaac cggaacactt tactccgaca tgtccgaatt gttcgggaaa cggccgacca      2220
     agcgtgacga aagcaggcga gcaacgcttg ggccagaaac ctgcgtggaa gtagatgata      2280
     aggaagaaga aaattatcag tatattatta ataaacaaaa tagattaggg attaataaat      2340
     taagatttct accagcagaa gaaagaataa aaagatatat tgaagtacga aacaggattt      2400
     ttgacgccag acagcttgaa ggtatgcggg gagtcagccg caggcttcta aagacccgtt      2460
     cccgctttaa gaagaggcga caaacgcgcc aggaggtggc tgaagcaatc caacgtggaa      2520
     cgagaacgga tccaagggtt ttcgctgagg tgaccataca cggccggaag attgcgggac      2580
     tgctggatac aggagcctcc gtaagtctac tgggcaaaga cagtagagag ctgatggcca      2640
     aactcggggt agagatggac agatatgtgt ccgtcgttaa aacagctgcc ggtgaagaca      2700
     gatccataat cggaaaaata aagcttcctg ttggatataa ggggattgta aaggacattc      2760
     tcttctacat atgcccgtac ctggaacaat cgatgtactt ggggatcgat ttctggagat      2820
     cttttgagtt ggctccagca gttctaggcg acgaaaacag cgaatccagt caagctcaag      2880
     tagctgaagt caagatgtcc cagatcagcc actatgcgga agatagaaga caagaaacgg      2940
     aggtagaagc ttgggacctg ggaawgaatg aagctgagga gttggagaac gtgaagaagg      3000
     aatttttgac ttacgaagaa gccgggctag gaacgactgc agcagaacag caccagatcc      3060
     agctggtgga gggcgcagta ccgtttaagg atcgttgtta cccgctatca ccagcgatgc      3120
     aggaagtggt ctggaaagaa gtagacaaaa tgctagagct aggggttata gaggttagtg      3180
     acagtccgtg gagcaataga acaacggtcg tgcgaaagcc agataaaaac agattctgct      3240
     tggacgcgcg gaaacttaac cagctcaccg taaaggacgc ctaccctctc ccgagtatcg      3300
     aaggcatatt gtctaggatc gaccagacat attatatatc tagcgtcgat cttaaatttg      3360
     cgttctggca aataaaattg gaaccggaaa gccggaagta taccgctttc acagtagccg      3420
     gacgaccact ttaccaattc gtgatgatgc ctttcggcct ctgcaatgcg gcccaaagat      3480
     tatgtcgatt gatggaccaa gtcattccga cacaactacg atcaaacgta tttgtctatc      3540
     tggacgatct tctggtgata gctcctgact tccagacgca tctgcgatat cttcgtttgg      3600
     tagcacaatg cctgaaacgg gcaaatttga cgatagggtt aaagaagtct aaattttgtt      3660
     tcaaatcttt aaaatacctt gggtttatca ttgggggtgg aaagctgcaa atggatccag      3720
     aaagagtctt ggccatacag aagattcctg atccgaagaa cgtaaaggag ttacgaagct      3780
     tcctaggtac agcagggtgg tacagacgat tcataaaaaa ctttgcatcc attgcagcac      3840
     cgctaactga cgccctcaag aaacatccaa ggggcaagtt ttccttgact ccggaggctg      3900
     tcgaggccat aaagcactta aagatggcgc taactacagc cccagtatta gtccatgctg      3960
     attttaaacg tccattcttt atccaatgcg acgcctctaa ctatggagtg ggagcagtat      4020
     tgttccagtt ggacgacgaa aattcagaac gtcccgtagc tttcttctct tccaagctga      4080
     ataaacatca gattttgtat tccgtcactg aaaaagaatg tctgggagcg gtattagcag      4140
     ttgaaaagtt taggccttac gtggagctga tgccgtttac tgtgatcacg gaccacgcaa      4200
     gcctaaagtg gctaatgtcc ctcaaggatc taaacgggcg tttggcaagg tggtctttaa      4260
     ggcttcagag tttcaacttt aaaattgagc atcgcaaggg aactgaaaac gtggttgctg      4320
     acaccctgtc acgctgcata gcagagctga gtttcgattt atctgatgcc attgggtttc      4380
     agacgacaga attcgagtcc gcggaatacc aagaattaag agaagaaatt agtcgaaata      4440
     tagcaacatt gcctgattta cgcgtagatg gaggattagt cttcaaaaga acgacattcg      4500
     aacaacttga cgaccaagta gaaggctcaa tttggaagct gtggatcccg gcaggaataa      4560
     catctacact aatagcgaac gcgcacgagg atcacaaagc tgcacacggg gggatgaaaa      4620
     agacacttca tcgtctgaaa cgtcatttct actggccggc tatgacgaca caagtgcggg      4680
     agtatgtccg gaattgcacc aaatgcaagg aatcaaaacc accaaattat cgttgtcaag      4740
     tcggaattgg tcaagaagta gtcacggaac ggccgtttca gaagatctat atagattttc      4800
     ttggaaagta tcccaggtcc aaaaagggac aagcatatat atttgttgtt gtagatcatt      4860
     tttcgaaatt taccttttta aaagcgatga aggaggcgag tgttgggaaa gtggtcgaat      4920
     tcctggtgca cgaggtgttt tacaaatttg gcgtacctga ggtaattcac tccgacaatg      4980
     ggaaacagtt cgtgtcgaaa atattccaag acatgatcac tgcattcggc attcamcaca      5040
     tgcgtaccgc tgtatattca ccacagagca acgcagccga gagggtaaat cggaccattc      5100
     tagctgcaat tagaacgtat ttagaaaatg atcatcgaga ctgggaccta tacttaccgg      5160
     aaattgaagt gtcgattcgt gattccgtgc atgaggccac gggtgtaaca ccgttctttg      5220
     cagtatttgg acaacagatg ttcctaaatg gaaactgcta caaactggca agaaaactgc      5280
     agtctttgac agaacatcaa ataacgacgc tggatccagt agataagcgc caacttatcc      5340
     gcgatcacat tcgggagaat ctccatcagg catatgaacg cagcagtcag cgctataaca      5400
     aacgggckcg agttttccat gccaagcctg gccaagaaat ctacagacgc aatttcactc      5460
     agagcaattt tggaaagatg tacaatgcca agtttgctcg aaaatatgtg aaatgccgag      5520
     tcgtacgccc tatagggaac aatgcctacg aattggagga tctggggggg aagcctgttg      5580
     ggattttcca cgcaaaagac ctaaaaatgt aaatataaat agtggatgta gctgtacmcg      5640
     tacacacgca tacttacata tatacctggg tagcaaaaca agagtctagt gggtgtaggc      5700
     ctacgttggg cacaaaaggc gaatcggggg gcaaggcagg atagcaaagt tgttgttttg      5760
     attattaaaa acactataaa cacaatttca cggcaagtca atctttcaat gtttacaaat      5820
     aattcgcttc ggccagcatt ctcgcgaatt tttgtgtgg                             5859
//
ID   Gypsy-27_DEl-LTR repbase;    DNA;    INV; 2026 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2026
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 466-466 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2026 BP; 697 A; 331 C; 461 G; 535 T; 2 other;
     tgtgttgcaa ttgaaagcta tcgacagggg aatatcgccc taggagatgg cagtgtgacc        60
     agtttttcaa aggttggcag ggccaagaaa gggaggggaa gtgtggagag taagaggcgc       120
     tctggtggac ggtcaggaaa gagaacctta atccgctctt agattccacc acctcccctg       180
     gcccagaagt atctccaccc acaccaaacc atgaggaact gcacccacac cgatagctga       240
     atgagagccg agcggctacg tgatgcaaat ggaagaggtt tctgccgttg gcgaaaaacc       300
     gagaaaggga tcagggaaaa aaatcgggtg atgctggtgc tgggcagagg gtataaatag       360
     ggctgaaagg ggtcaggcca ccacgagttc ccaaaaattt ttacagcagc aagtggttcg       420
     ggaaatttgt agtgaaaatt aatatatata atattaaaag tgagttagat gatggggtag       480
     tggccatcaa tctaaagtgt agtatcaaga taatataatg tacatcttca gaaaaggaaa       540
     cgggacgagt ttggacgacg aaacaggaca ggcaaccggg accgggaaaa gaaggcaccg       600
     tcaacgaaga agtaagtccg ttccaaagag aaaaatttaa tataaaaaaa aaaaaaggga       660
     aagtaaatct aaaattttcc ggttaaggtc accgttggcg aagtaaataa ataaaaataa       720
     attatacgat atctggacca cgtgccaccg gctccgggcc ggaccacgac aggaagaatt       780
     attcctttaa tcatatacat acctaaaacc ttttgaatta gccgcaccac actggcacgg       840
     gatttgtttt cgttgaaatt tttcttgtcg actataaaac attattgctc tacaaaaagt       900
     taaaatatga acgcagcatt gatgaaagac ttaaaatagt ttttaagtaa attaaattaa       960
     aacattccct cttaatatta tttaaaattt cgtcccaata atttaaataa aagtcgttcg      1020
     tccaccttaa tctaagttta tatgttaatt tattgaatta tttatgcacc actaaactta      1080
     tatatcccac atgcatacat catatattgt ttattaacat atgtctatat agaacatttc      1140
     taaataatat aagtagtatt tgtaagtaaa aagaatttga tataatcaga atttcgggaa      1200
     acaaggaaaa gaatatacat ttgcataaaa ttacatatgt aaatttgcgg aggtctcgca      1260
     gcagttggga tgtaaattag cgagtaaagt aaagtaaata actacacaac tatatgcgaa      1320
     tgtaaagaaa aaggaaaagt ctcacgttaa taagtttaga aaccccgaga taaaaatgat      1380
     ctcaatatta aacccctggt tggagctcca aataggtagg gtaatttaaa tgtataatta      1440
     tgaattgatc aatatttata tgttcgtata tgggtcaaca atggtgtaac gaaaatttaa      1500
     atcaatttca aaggaagtgt ttccgtatga atttgacatc gcagctgtag caaggggawg      1560
     caaataaatg cagataagtt aactgaagat atataatgca agaaattgaa gatgaatgtt      1620
     tatggttaat aataaaattg taacgtgagg atgatgtgct aagtgttcgt ctatggggag      1680
     ggggaaatga gactgaccct ggagtaggct gacggtagcc akcggaaggg agatttggcg      1740
     aaggatgcat gccggatctc aggtagggtg ggggtgtcgg agtacatcac ctaaactcca      1800
     aattgtccag cgcaagtaaa gtttccagta acgtccaatg tgtatcatta tttatcctat      1860
     ttttgtttgc attttgtttt tgtttacatt tgatcttgtt atgatgtcgt cggactgaga      1920
     tggccgatca gctgggctat tgtgcggact gagggctggg aagaacccca ccacgagatg      1980
     gactggctag ccggccttgc cccatcgaag aaccaggtcc gtaaca                     2026
//
ID   Gypsy-27_DMel-I repbase;    DNA;    INV; 6297 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6297
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (16-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A conceptual reconstructed element. A partial consensus.
XX
SQ   Sequence 6297 BP; 1866 A; 1576 C; 1434 G; 1421 T; 0 other;
     aacgcccaac tcgtggtgac tacccacgca aaagtgacac atatttataa aactcaacta        60
     acaagtggtg atcttaaggc atcagtacca gtgcgaaagc caacacctct ccaatagcat       120
     attggcagag gcgcgcgaaa gtgcaaaaat aaaaaaataa ttaaacaccg aagccgcggg       180
     agctcttcgg gcagcggcgt gtcgccagac taacgtgcta gttagctgga cagcggagac       240
     tgcagcgcgg gaagcggaac cagttcagca tcaacaacaa ttaacacaca caacattaaa       300
     aatgtaagtg ggctttttta ctcaaactgt gttttaagtc tgctataatt taaatataac       360
     taaatataat tgaacgcgta attttgcaag aatcaccagc aacaaaatac aaaaagttta       420
     agcaagtata gtggcttgag agctgggttg acataagagt gttatttgtt gactaagcat       480
     tacgagcgcc gcatgaaatg catgtgggca taagtttttt tccgtttgcc tttgttccgt       540
     tcgttctggg tcatcgctca gtgtaacacg atccgctcaa ttttgcaact tagttgcctt       600
     gcccttcaag cggctcgctt caaatcgctt tggctacata gaagcccatg tcttcaccct       660
     tcagctgcta taggaacccc cgtcagcagg tggctccgat tgcgacagtc gcattcgtgt       720
     cccaggccca aggcatacag tttcgtcccc cccagcacca tcaagcatgg acgctgagca       780
     actcagactg gtggtgcaaa cggctgttac tgctgcctta gcagaacaag ccaaagcata       840
     ccagcccttg gtagacaaag tcgaattgct atcacagcaa atgacaggaa cgcatatcgt       900
     atcaccggta gtagaaagtt tctctgatat agatataaca agcgacgctg tgtgtaacga       960
     gccattagat gccgtcaaga gcttacccga attcacaggg gtacaagaaa aatatgcttc      1020
     atggcgacgg gcagccctca tggcttaccg cgtcttcaga ccacactacg gcaccgcgcg      1080
     ccagcttgag agctgggtgc tactgctgcc ttagcagaac aagctaaggc ataccagccc      1140
     taggtagaca aagtcgaatt gctatcacag caaatgacag gaacgcatat cgtactaccg      1200
     gtagtagaaa gtttctccga tatagatata acaagcgttg ctgtgtgtaa cgagccatta      1260
     gatgccgtca agagcttacc cgaattcaca ggggtacaag aaaaatatgc ttcatggcga      1320
     cgggcagccc tcatggctta ccgcgttttc aaaccaccgc caatttattt aaattctgaa      1380
     actcaactta taactaaaaa gattcatact ttctcaacat cggaatccaa cgtcggatct      1440
     attcaccctc atcatctgat cacaagcttc ccccttggac acgctgataa gtcgcgccat      1500
     taccaggcgg tcataatcat aagaaacaaa gtcacaggga ccgcaaatga ttaactagct      1560
     tcattctaca ctgcacttaa cgtcgacgca atcataagtc gtctagattt cgcttacagc      1620
     gataagcggc caattcatgt tatcgaacgc tcaggcagaa tggcgcgcct ctgctgaagt      1680
     actatgatga ggtcggcaag aaactgacgc tgttgacaaa taaagtcaac atgtcgtatg      1740
     agccagcaaa ggcactttgc gaaagatttc gcgaagatgc cctacgaatc tttgtgtcag      1800
     ggttgaagcg cagtctcacg gaagtgctct ttgcaactaa accgagggat ctaccatcgg      1860
     ctctggcact cacctaagag gtcgagtcga accacgacag gtgcaacttc gcgaaaggca      1920
     tggaagacgg aagagcagag atgccaatca gcgagttaaa ccaaatcagc acgccgaagc      1980
     gcaatcaatt gggtcaaaga acccgcactt tagcactcaa cacaaacagc aagtccagcc      2040
     cggtcagcac ggtgctgagc aacaaagtcg cggtagcgca ccgcaaccta tggaagtcga      2100
     tccctcgctt tcaaggttct ggcagcccgc tcaagaatcg aacgatgcca acaagcggcc      2160
     agccacgtcc gagcgcacta acgctaggca tcaaaaccaa aaggtgaatc atgtcactca      2220
     gggtgctgtg cagggagcag agtcgtatgc cgcttccgcc agcgccgcga tggcacatat      2280
     taacgctgat gaggagatcg actcggacgc cctcaatttt ttaggggtaa attcctgcta      2340
     cccgtcatca gacgaagagt agcggggctt gacatgaagt tcctcatcta caccggcgcg      2400
     tcaaaaaact tcatcaggca acataagggc ctacatggcg tccgtccggt tagcacacct      2460
     ttcagggtgc attcggtaca tggctcaact aatgtcaccc aaaagtgctt tgtcgcgcta      2520
     tttaacacaa aagcaacttt ttttcttcta ccagatttgc ctcatttcca tgggatcatt      2580
     ggcctcgact tgctagtgca agctcgggca tcgctttgcc tggcctccgg ccatcttaaa      2640
     tggggcacgg aagttgagga aatctccttc cacacatgcg ctgacgtaaa cttcacagac      2700
     atagactgct cagacgcgcc cgcttgggtg cagaacactt ttttaaaagt gttaagaacc      2760
     agaaagaagg ctttcgcaag tcccaacgtg gcactgccct acaacacgtc agtggttgtc      2820
     acaattagga cagtgagcga ggagcctatc tacgccaagc tttaccccta tcccatgggt      2880
     gtagctgatt tcgtcaaaaa tgagatccaa gacctcctta agaatggcac aatccaaaaa      2940
     tcggcttccc cttacaacaa tcccatatga gtggtagata agaagggaac cgatggggcg      3000
     ggtaaccgga ataatcggat agtaatagac ttccgcaagc tcaacgggag aacaatctct      3060
     gacagataac caatgtcaaa catctcaatg atactaggca atttgggcaa agcccattat      3120
     ttctcgaccc aggatcttaa atccgggcac catcagatca cgctcgccga acgcgaccgt      3180
     gaaaagacat ccttatcggt aaacgggggg aagtatgagt tcaagagaat gccatttggc      3240
     cttaagaacg ccgccagcat ctttcaaaga atcattgatg acatccttcg gaaacaaata      3300
     gacaaatttt gctatgttta tgttgacgat cttctccaag gacgaggagt cgcatgtcga      3360
     gcatgtagat tgggtcttaa agagcctata tgaggaatac atgagggtgt ctgttgaaaa      3420
     ggcccgttct tttttagaaa agcgtcaact ttctgggttc atagtcacta gtaacggtgc      3480
     aacaacggac ccagaaaaag tcagacccat taaagaactc ccagagccaa agacggccat      3540
     agcttttccg aagcccagca acaggcgtat ggaaagcccg catagacgag tcaaacgctc      3600
     gtttattcta taagccgggt aaagagaacc tggcagcgga cgctttatcc agacaacagc      3660
     ttattgcgtt ggaagaagaa gaggctgact cgtgtgccgc aacagtgcac agtgagatgt      3720
     gtctcactca cataatccag tcaacggata agccgttgaa ctgtttccag aatcagatag      3780
     tactggagga agcacgcctc tcgtctaaac atacatttat tttattcgga aacaaggtga      3840
     cactcgatta atttcgtctg cagagaaggg aaatcttgac cgccgaacat aatagggccc      3900
     acagagcagc tcaagaaaat gtaaagcagg tcttgtccga atactacttt cctaaaatgg      3960
     ctaacgaaat tgtgcaggag ttgcagaacc tgtgcaagag ccaagtacga caggcaccca      4020
     aggaagcggg agattggcga aacgccaata ccgtcacaca caggggaaat actacacata      4080
     gacattttct ctactgacaa taaattcttc ctcacttgta tcgacaagtt ttacaaattt      4140
     gccgtcttac agcccattag ctcgcggact atcgaggacc tgaagtcagc gctgcatcag      4200
     ctcatgaact tcttcccaag ggccaagatg atatactgcg acaacgaacc atcgttgaat      4260
     tcgcatacaa ttacaaatat gctgtgcaac aactttggtg ttggcatcac gaatgctcca      4320
     ccattgcaca gcacctccaa cgggcaggta gagcgcttcc atagcacact actggaactc      4380
     gccaggtgca tgaaaataga caagggaatg ggcgacacga tagagttagc caccgcccag      4440
     tataataagt cgattcactg ggttgtcatc gtagcgcacc ccgacgagcc acaggaggaa      4500
     atgtacaata atatccaaaa ggctcaaacc gcgctcaggg ccagagagaa cgcctctcgg      4560
     aaaaacaggg tatttgaagt cggtgagaag gtgttggtca aaaccaaccg aagactcggc      4620
     aacaaactca cgcccctgtg cgaagaaaga gctgtcgaag cggacatggg gaccacagtc      4680
     tttattaagg ggagggtggt ccataaggac aacctcaatt gactcaccca tattcaatgt      4740
     ccttaaatat attagctgta aggttttttc aaactacttg gcacgtttag atttactaac      4800
     atttaagctt aacacctttg acacacacag tagttaagta agtaaattac aaaaatatca      4860
     gtaaaatttt cacacacagg accggattca tccttctcct atctgtgtcc caggactcgg      4920
     cgcacaaaac caactactcg cgcgccaaat gcatccccat cgtcgacgga cagatcctgg      4980
     tatgggagaa gtttgcctac gtaaggcact ccgctaacct ttcggagtac acgcgtgtcg      5040
     tggtagagac aatcgcccta atggaacact tcccacaatc acacatgaag catttgctga      5100
     gtgtggatac gacacacctc aaagatctgt tggatgcatt aggcttgcac cacagggtgg      5160
     ccaggagcct agactttctg ggttccatgc taaaagtcgt agctggcaca ccagatgcta      5220
     gcgatctaga gtagattttt agaagcgcga ttgatcgacg cgaacaatag gcaaatagaa      5280
     ataaacacta aagttcagga ccagattaat caacttacct acacagtcga cgtaattctc      5340
     aaaacggcaa aggggtcgca aattgacacc aatcatttgt atgaaacctt gctggcgaga      5400
     aatagaatgc acaagaatgc ttcaaaattt aatgttggcc gtgacacttg caaagctcaa      5460
     tatcgttagc tcgaatattc tcgatcacgc agacttaaaa tcagtttggc ttgaggagcc      5520
     caccaacacc cccatagggg acctcatgtc cgtgtcgtcc ataaaagtgc ttcagtccac      5580
     taactcatta cacttcatca ttaagtgtcc taagattaag tttgcttgca aaaagattac      5640
     tattttcctc gttagccacc aaggaaccat gctgcgaatc accgacaacg tcatcgctga      5700
     atgtaataac gaagtctaca ccgtcaagga ctgcacggcg tcgaccagca ccgccttttg      5760
     tcaattgtcg tcgggcagct catgtgccag agagctgctg gcggcgtggc gcactgcgaa      5820
     gtgcaaccaa gcagtctgga ccccattacc tatgtagacg atggaatcat catcatcaac      5880
     gacaagactg ccaaagtgca aatagacaat agcaccgaag tctgggtgta cggcacgcac      5940
     ctcatttttt tcacccagca cgccacgata aatgaaacta ctttcatcaa ccgggatagc      6000
     gttcagagcc gagccccagg ggtagctaaa ttccccctgt tgaatattag cgctagccag      6060
     aacgtgctca gcctccctta ccttcatcgc ctgagtgaaa gcaattcgga gacaatccgg      6120
     aaattcaaga agagatcgat gctgatcgcg cccaacaggt ggcacttatc atggcttcag      6180
     tatgctgtct gctattttgc gttggcctcg tgagctggcg tatgtatact aagggccaga      6240
     agagctacaa ggcaattgaa tgtggcgatt gccggaatca ggtcggccga gggcgtc         6297
//
ID   Gypsy-27_DMel-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-301
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 728-728 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 301 BP; 90 A; 66 C; 61 G; 80 T; 4 other;
     agttaactaa agttaacgtc cgcggacggc caaataaaat aagcgacagc aacggcattc        60
     tgcaaagtaa gcataatgct agacgtcgmt gcatagccgg caaactcagc atatttgcgt       120
     ggccgctatg aacatggatc cgcaacgata tgtgttgcgg tttcmmtggt agctttagtc       180
     tttattctgc attcaatacg gcagmctttc gctccgcaaa taaaattata acgcaataat       240
     cgctccgtct ttcattggga cgttaaacgg taactatagt tactcaatta cacaagtaac       300
     t                                                                       301
//
ID   Gypsy-27_DP-I repbase;    DNA;    INV; 4725 BP.
XX
AC   super_86;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DP_;
KW   Gypsy-27_DP-LTR; Gypsy-27_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4725
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1539-1539 (2012).
XX
DR   Genome; super_86; Positions  177904  173180.
XX
CC   Positions [3871-4227] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..3867
FT                 /product="Gypsy-27_DP-I_1p"
FT                 /translation="MAESSSVKEVIRAMVPFSNPRDQDAGLWIMKLELACS
FT                 AVDESDAYKLRCARLLMAPNSEADTFMRLDTSENYDQFKTNFLKTFDKACS
FT                 TTELVMKLQKTFYIPAKTSVMGYILQMQELALRASVCEIEAVHFIIDGFRD
FT                 TSPAIALLYGAKTINELKELSHRYADLRAKNKPKWNSSTISSASTSALTSA
FT                 LTSASTSASAQSSLTSNGEMRCYNCSLFGHYASDCKAPKRAKGSCFRCGSL
FT                 SHTIKTCPEQKHTKSAMEPKTPRDEDSDEYPFVPIFDQVGVYFYTDPKRKT
FT                 YKNILSAMFDPGSAVNIVRASTLRFQNIKKYTLLPSNLRSVSGSHLFTYGK
FT                 IYLHITYHDIENMILFYIMPDEYMSEDLLLGRPFLKKYKLKLFYEHHKPET
FT                 NKIENLSFKLSEKKTISPSIIVSNDIALDQLTPTHPVDTANSYEPLHKSKT
FT                 PINNSETLDHKLDKLGNETAGSIKKKPPNNSELPISNALLDVIEQTSDIQN
FT                 IYNIEKIDIEDYNIDYKISENSRSEIRTLIELNYLDLPNIPAIEHKYEMKI
FT                 KIMSQAPIYSTPRKLSYHDKRVVDKLIEELLTEGHIRPSDSPYTSAIVLTK
FT                 KKSGEKRLCVDYRQLNKITVRDGYPLPLINDCIERMEGNKYFSLLDLKSSF
FT                 HQVKVAENSIQFTSFVTPNGQYEYLSMPFGLRNASAVFQRFVNNIFGPLIK
FT                 QGNVVVYMDDIAIGTKTIEEHFVVLSKVLRLLAEYRLEIKLSKCLFCYTSI
FT                 EFLGFTLSKDGIKPNNDNITTIKHLPKPTNSADMQKCLGLFSYFRRFIPGY
FT                 SKVAKPLQALTKTIGKFELDDKCVTIFNYLCERLASAPVLALYSPTKETEL
FT                 HFDASAEGFGGILLQKQDDNKFHPISYFSQATTPAESRYHSYELETLAIIY
FT                 SLNKFKIYLEGIPIRIITDCNAFTLTLCKKTVNSKIARWALELENYDYTVN
FT                 HRSGKNMPHVDGLSRYPTISPEFSYEPKVSVQENNNKDRIVSVIDIDDINF
FT                 QLQVTQNRDSTIIQLKDKLEREPVKNFVLEDGIVYRKYADFELLYVPSEME
FT                 NNLIRTVHEKLCHLGVEKCVTEIKKHYWFPNMTAKVDSFIKNCIKCITFSL
FT                 PSHSNNRSLHSIPKRPIPFDTLHIDHFGPLPSVINKKKHILVVIDGFTKFV
FT                 KL"
XX
SQ   Sequence 4725 BP; 1681 A; 895 C; 877 G; 1272 T; 0 other;
     acttcagaag tgggatacgc aatccaaagc tactttaaaa acgcctacag ttattcaaat        60
     tttaatcaaa gtcagtatga accccgctgc cattgagaag cagcagcttt tggactggat       120
     ggacgggcaa ggaattgcgc attcgagcaa tgcaactttg cggcagctga tcgtcctgat       180
     cgtcctgatc gtccaaccag ccctgtagtt ccgaccaaat ttaatgcttc agccgacaac       240
     gaccctgaca ttccggccga ccctaatttg gaaaacgacg ccgacacgct gacgccggtg       300
     gtcggcaagg cacgcatacc agaagaagaa gagttagatg ccgccattag aatattacaa       360
     aaaagggctt tgctcacaaa actaatggcg gagagcagca gcgtcaaaga agtgatccgt       420
     gcaatggtcc cattctcgaa tccgagggac caagacgctg gattgtggat tatgaaatta       480
     gagttagctt gttctgctgt tgatgaaagt gacgcctaca agctacgatg cgcacgctta       540
     ttaatggcac caaattcaga ggcagacaca tttatgcggc ttgacacttc agaaaattat       600
     gatcaattta aaaccaactt tctgaaaaca tttgacaagg catgttcgac aaccgaatta       660
     gtaatgaaac ttcagaaaac tttctacatt ccggcaaaaa catccgttat ggggtacatt       720
     ttgcagatgc aagagttggc gttgcgtgca agtgtatgtg agattgaagc agtccacttt       780
     atcatcgacg gtttccgtga cacgtcgcca gccattgcct tgctgtatgg agcgaagacc       840
     atcaatgagc ttaaggaatt atctcatcga tatgcagact taagagcaaa aaacaaacca       900
     aagtggaact catcgactat ctcttcagct tcaacttcag ctttaacttc agctttaact       960
     tcagcttcaa cttcagcttc agcacaatct tcattaacat cgaatggtga gatgcgatgc      1020
     tacaattgtt cgttgtttgg acactacgct tcagattgca aggctcccaa acgtgcgaag      1080
     gggtcctgct tccgttgcgg ctctctcagc cacactataa agacgtgtcc ggagcaaaag      1140
     cacaccaaat cagcaatgga accgaaaact cccagagatg aagacagcga cgaataccca      1200
     tttgttccga tatttgacca ggtaggagta tatttttaca ctgatccaaa acgcaaaact      1260
     tataaaaata ttctttccgc tatgttcgac ccgggcagcg ccgttaatat tgtgagagct      1320
     tcaacattac gattccaaaa catcaaaaaa tacactcttt taccatcaaa cctacgtagc      1380
     gtcagcggct cacatctttt cacttacgga aaaatttact tacacataac ctatcatgac      1440
     attgaaaata tgattttgtt ttacattatg ccagatgaat acatgtcaga agatttgcta      1500
     ttgggtagac cttttttgaa gaagtataag ttaaaattat tttatgaaca tcataagccc      1560
     gagacaaata aaattgaaaa tttaagtttc aaattaagtg agaaaaaaac catttcgcct      1620
     agcataattg tttccaacga tatagcctta gatcaactaa ctcccacgca tccggttgac      1680
     actgctaata gttatgaacc ccttcataaa tcaaaaacac caattaataa ttcagaaaca      1740
     ttagaccata aattagacaa attagggaat gagacagcag gtagcattaa aaaaaaaccc      1800
     ccgaataaca gtgaacttcc gataagtaat gcgcttctag atgtaattga gcaaacttcc      1860
     gatattcaga atatttacaa tatagaaaaa attgacattg aggattacaa tattgattac      1920
     aaaattagtg aaaactcgcg tagtgaaatc cgaacattaa ttgaattaaa ttatttagac      1980
     ctgcccaaca taccagccat tgaacataag tatgaaatga agataaaaat tatgtcacaa      2040
     gccccaatat attcaacacc aagaaagctt tcatatcatg acaaaagagt agttgacaaa      2100
     cttattgaag aattgctgac tgaaggccac atcagaccga gtgattcccc ttatacctct      2160
     gcaattgtac tgacaaaaaa aaaatcaggt gagaaaaggc tgtgcgttga ttatagacaa      2220
     ttaaataaga taacagtaag ggatgggtac ccattgccac ttataaatga ttgcatagag      2280
     agaatggaag gtaataagta tttctccctt ctggatctga aaagtagttt ccaccaggtg      2340
     aaggtggcag agaattcaat tcaatttaca tcttttgtga caccaaacgg acaatacgaa      2400
     tatcttagca tgccattcgg tttgcgaaac gcatcagctg tctttcagcg atttgtaaac      2460
     aatatattcg gcccattaat aaaacaagga aatgtagttg tatacatgga tgacattgca      2520
     atcggaacaa aaactataga agaacacttt gttgtcttaa gtaaagtatt acgcctccta      2580
     gcagaatata gattagaaat caagttaagc aagtgtctgt tttgttacac tagtatagaa      2640
     tttctgggat tcacattaag caaggatgga attaagccaa ataatgataa catcacgaca      2700
     attaagcacc ttccgaaacc tactaattcc gcagatatgc aaaaatgttt aggactcttc      2760
     tcttacttca ggagattcat tccgggttac tcgaaagttg ccaaaccatt gcaagctctg      2820
     acaaaaacta tagggaaatt tgagttagat gacaaatgtg taacaatatt taattatctc      2880
     tgtgagagac tggcctcagc accagttcta gctctgtata gtccgactaa ggaaacagaa      2940
     ctgcattttg acgctagtgc cgaggggttt ggaggaattt tattacaaaa acaggatgat      3000
     aacaaatttc atccaatctc atatttttct caagcaacaa cgccagcaga aagtaggtat      3060
     catagttatg aattagaaac tctagccata atctactcat tgaataaatt taagatttac      3120
     cttgaaggaa taccgatccg aataataacc gattgtaatg cctttactct aaccttatgt      3180
     aagaaaactg taaattcaaa aattgctaga tgggcccttg aacttgaaaa ttatgactac      3240
     acagtgaatc atcgaagtgg taaaaacatg ccccatgtcg atggcttaag tagatacccc      3300
     acaataagtc cagaattcag ttacgaacca aaagtttcag ttcaggaaaa caataataag      3360
     gatcgaatag tttcagttat agatatagat gacatcaact ttcagcttca ggtcacgcaa      3420
     aatagagata gcactataat tcagttaaag gataagttag aaagagaacc agtaaaaaat      3480
     ttcgtattgg aagatggtat tgtttataga aaatatgctg atttcgaatt gctttatgtc      3540
     ccgtcagaaa tggaaaataa tttaataaga actgttcacg aaaaattgtg ccatttggga      3600
     gttgaaaaat gtgtaactga aattaagaaa cattattggt ttccgaatat gaccgcaaaa      3660
     gttgatagtt ttataaaaaa ttgcattaag tgtattacat ttagccttcc gtcccattcc      3720
     aacaatcgct cattacatag tataccgaaa agaccaattc cattcgacac attgcatatt      3780
     gaccatttcg gacctctccc ctcagtcatt aataaaaaga aacacatatt ggtagtcatt      3840
     gatgggttca caaagtttgt caaattgtaa tctgcaaaca caactagtac taaggaagtt      3900
     tgcgcatgct taacgaaata ttttgaaaat tacagcagac ctaggagaat tgtcagtgat      3960
     aggggctcat gtttcacatc gttggaattc agcgagttca tgctaagtaa caacattaaa      4020
     catgttagag cagcaactgc ctcaccacag gcaaatgggc aagtggagag agtaaataga      4080
     acaatgaaaa gtatgttagc aaagataact gaaccattgc aacattcaga ttggtgtaaa      4140
     ctactcacaa aagcggaata tgcaataaac aattcaaaac attcggttac tggggaaata      4200
     ccatcggtgg tactattcgg tgttcagcaa agaggctgtg atattgacgc tttaacggaa      4260
     tttctagaag acaaaaataa tccaaaacca aatagagact taatagcaat tcggaaagga      4320
     gtattagata aaataactga aaaccaaact aagataaaac actattatga taaaaatatt      4380
     agaaaacata tagaatttaa agaaggagac tttgttctcg tacgaaacgt tgacactacg      4440
     ataggtacaa ataagaaatt tataccaaaa tttaaaggac catacattat caaaaaaaat      4500
     ttaccaaatg atcgatatgt tataactgac attgataatt gtcaagtatc tcagattccg      4560
     tacgacggtg taatagaagc ctgtcgactt cggaaatatg taaattggcg tgatcagtgt      4620
     agaactatct cttactaatc tgtattttat aattttagcc tagtagataa taaaagtaac      4680
     caattgtaag gatcgagggc gatccatttg tcaggatggc cgagc                      4725
//
ID   Gypsy-27_DP-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   super_86;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DP_;
KW   Gypsy-27_DP-I; Gypsy-27_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-219
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1540-1540 (2012).
XX
DR   Genome; super_86; Positions  173179  172961.
XX
SQ   Sequence 219 BP; 80 A; 45 C; 43 G; 51 T; 0 other;
     tgtaaggcaa ccccatatta accctaacca accccatatt agcccttacc gatattaacc        60
     ccgatcccga taggttttat gcgataggtt ttatgcgata gttttgatgc gatataatac       120
     tgcgataagt cgggggcaat taattcgacg atcgacaaga agatgaaaga gacgtagaat       180
     aaagaagtta ataaaagtaa aacaaagaac cgcgccaca                              219
//
ID   Gypsy-27_DWil-I repbase;    DNA;    INV; 5864 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DWil_;
KW   Gypsy-27_DWil-LTR; Gypsy-27_DWil-I.
XX
NM   Gypsy-27_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5864
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5864
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
CC   ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           362..4813
FT                 /product="Gypsy-27_DWil-I_1p"
FT                 /translation="MNIIGNLECCSEDLELQDLIKDIESLKVTQTICQSAD
FT                 FALTMSEETVRAVIHGALEHQAAVLSAQFESKLNALREEIDLLKVSAPQVE
FT                 QYRKIIIDPEKQCDELLDIVKSLPEFNGCQEEYVAWRQAATIAYEIFEPYD
FT                 GSARHYHAVAIIRNKIRGAANHTLASFNTVFNFRAIIARLDFTYADQTPRG
FT                 VIQHKLATVRQGDRTLLEYYDEVERTLALLTNKNIMSNEEAAAAILNQRAR
FT                 EEALEAFISGLKKSLRLAVFPSRPKDLPTALALAQAAETSEDRSVLAANYA
FT                 KTMGDKNQKFSTQKSQDNRQSDFWSSKSQSAHQGNSPHYQNRKPQQNRSAK
FT                 QRLYNKETTHQAPEPMDIDPSSSRLRQPTAYRSRADSSRSGYQSGKLKNSS
FT                 ERISGQGAQRINNLIQKSGTSENYDCIANGSAAATDCQGDIEYATENDSEF
FT                 EVDTDNVNVLKGRSLLPFVQKKVAGGILRFLIDTGAAKNYVKPLSWLKGVS
FT                 PVEKPFSVTSIHGSTVIDQKCKIYIYGINSTFFVLPDLSNFDGIIGLDLLK
FT                 QANATLDLKSNRITVGSESELLLYAKCPNVNFTNVVGEQISPQYKNEFIKM
FT                 LESRAAAFASPNEKLPYNTAVVATIRTTTDNHIFSKLYPYPMGVADFVAAE
FT                 VNDLLKNDIIRKSRSPYNNPIWVVDKKGTDEKGNRKKRLVIDFRKLNEKTI
FT                 SDTYPMPSIHMILANLGKSKFFTTLDLKSGYHQITLAERDREKTAFSVNGG
FT                 KFEFCRLPFGLKNAGSIFQRTIDDVLREQIGKTCYVYVDDVIIFSESETAH
FT                 IKHVDWALNRLFEANMRVAQEKSQFFRTSVEYLGFIVTSEGARTDPEKIRT
FT                 ITEYPEPKTLFGVRSFLGLASYYRCFIKDFASIARPISNILKGKNGSISKY
FT                 KSKSIPIQFNELQSHSFHKLKNILASEDVTLMYPDYKKPFDLTTDASADGI
FT                 GAVLSQNGRPVTMISRTLKPCEINYATNERELLAIVWSLSKLRQYLYGVKD
FT                 INVFTDHQPLTFAVSDSNPNAKIKRWKARIDETGAKILYKPGRENFVADAL
FT                 SRQNINALSDDDCESDVATIHSEASLSYTITSSDKPVNCYRNQLILEQARF
FT                 PLKRQFILFGQKIRHLINFSNNETLLEEAKAAINPNVVNAIHCDLPTLARV
FT                 QHELVKAFPATKLYYCKQIVADIFDSNESREIVITEHNRAHRAAQENVKQI
FT                 MSDYYFPKMTQIANEVVTNCKICSIAKYKRHPKRQELGSTPIPGYVGEMLH
FT                 VDIFSTNKKYFLTCVDKFSKFAVVQPIVSRTIEDLKAPLFQLMSLFPKAKT
FT                 IYCDNEPSLNSMTIKTLLQNNFGVEIANTPPMHSSSNGQVERFHSTIAEIA
FT                 RCIKLQRGNVDTVDLVLLATVEYNHTIHSVTQKTPSQIFCPSSEASKGVRD
FT                 MINKAQVTQRERVNRNRQSRVWNVGDKVFVKVNRRLGNKLSPLYVEETVEA
FT                 DMGTCLLIKGRMVHKDNLR"
XX
SQ   Sequence 5864 BP; 1913 A; 1253 C; 1218 G; 1479 T; 1 other;
     ggcgcccaac taaatcaacc caatacttca accagattca tgtaagtgag ttggaatgtt        60
     agaagttttt gttaataaaa aaaaaaagtg tatgaaacat tagaaacata caatgaatgt       120
     taatataaaa aaaatgtgaa acattagaaa catataatga aatcaacgag agggtaagca       180
     attaatgcac aatttgttgt tgtttttttt gagaaaacgt taaatttgtt ttttctgatt       240
     ctcttttgcg ctatgttttc tgctgtgttt tgttcacttt cgaacgtgcc ggtgtcttaa       300
     ataagaatcg aaatttaaaa tacaaatcaa aatttaagtg attttgagtg actgtgtgtt       360
     aatgaatatc attggaaatc tagagtgctg tagtgaagac cttgagttgc aggatttgat       420
     taaagatatt gagagcttaa aagtaaccca gactatttgt cagtccgcag attttgcgtt       480
     aacaatgagt gaggaaacgg tccgagcggt cattcacggt gcgttggagc atcaggcagc       540
     tgttttatct gcacagtttg aaagtaaact aaacgcccta agagaggaaa tagatttgct       600
     aaaggttagt gctccacaag tcgaacagta tagaaaaata ataatagacc cggaaaagca       660
     gtgtgatgag ctgcttgata ttgttaaatc tctgcccgag tttaacggat gccaagaaga       720
     atatgtcgct tggcggcagg ccgcgacaat agcttatgaa atatttgagc cctacgacgg       780
     ttctgcccgg cattaccatg ccgtagcaat tattagaaac aaaataagag gggcggcaaa       840
     ccacaccctc gcttcattta atacagtctt taatttcaga gcaataatag cgagacttga       900
     ctttacttac gctgaccaga caccaagggg agtcattcag cataagcttg ccactgtccg       960
     gcaaggcgat cgtaccttgc tagaatatta cgatgaggta gaaagaacgt tggctctttt      1020
     aacaaataag aatataatga gcaatgagga agccgcagcg gcgatcctaa atcaaagggc      1080
     tagggaagaa gcattagaag cttttatatc gggcctaaaa aaatctttaa gattagccgt      1140
     gtttccttct cggccaaagg acttaccaac agctttagcc ttggcgcagg ccgccgagac      1200
     tagcgaggat agaagcgtgc tcgctgccaa ttacgcgaaa accatgggag ataagaacca      1260
     aaaattttca actcaaaaat cccaagacaa ccgtcagtcc gatttttggt ctagtaagtc      1320
     ccaaagtgcc catcagggga atagtccaca ctatcagaat aggaagcccc aacaaaatag      1380
     atccgccaaa caaaggttgt ataataaaga aaccacacac caggccccag aaccaatgga      1440
     tatcgatcca tcttcgtcca ggctaaggca accgacagcc tatcggagtc gggcggactc      1500
     ctccagatct ggatatcaaa gcggaaagct gaaaaactcg tccgaacgca tttcgggtca      1560
     aggggcgcaa aggatcaata atttgattca aaaaagtggc acgagtgaaa actacgattg      1620
     catcgcaaat ggcagcgctg ctgccaccga ctgtcaaggc gacattgagt atgcaaccga      1680
     aaacgattcc gaattcgaag tagacacaga caatgtcaat gttttgaagg gaagatccct      1740
     tctcccgttc gtgcaaaaaa aggtagcagg cggcatctta aggtttttaa tagacacggg      1800
     ggctgctaag aactatgtta agcctctatc ttggctaaaa ggtgttagcc cggttgagaa      1860
     acccttttcc gttacgtcca ttcacggctc aaccgtaata gaccaaaagt gcaaaattta      1920
     catatatgga ataaattcaa ccttttttgt tttaccggat ctgtcaaact tcgacggaat      1980
     catcggcctc gatctgttga aacaggcaaa tgccacatta gaccttaagt cgaatagaat      2040
     tacagtcggc tcagaatcgg aactgcttct ttatgctaaa tgtccgaatg tcaattttac      2100
     taacgtagtt ggcgagcaaa tatcacccca atataaaaac gaatttatta aaatgttgga      2160
     atctagggcc gcagcattcg cgagcccaaa cgaaaaactc ccctacaaca ccgctgtcgt      2220
     tgccaccatt agaaccacga cagataatca tattttctca aaactctatc cgtatcccat      2280
     gggtgttgca gactttgtag ccgcagaggt aaacgaccta ttaaagaatg acatcataag      2340
     aaagtctaga tccccgtata acaacccgat ttgggtagtg gacaaaaaag gcactgacga      2400
     aaagggaaac aggaaaaaac gactagttat agattttaga aagcttaatg agaaaactat      2460
     ttcggatacc tatcccatgc ccagcattca tatgatatta gcaaatttgg ggaagtctaa      2520
     attttttaca actctcgatt taaagtcggg gtatcaccaa ataactttgg ctgagagaga      2580
     ccgcgaaaag acagcattct ctgtaaatgg gggcaaattt gagttctgtc ggcttccatt      2640
     cgggctgaaa aatgcaggca gtatttttca gcgaactatt gacgacgtct taagagaaca      2700
     aattggcaaa acttgttatg tttatgttga tgatgtcatt attttttcag aatccgagac      2760
     ggctcacatt aaacatgtag attgggcttt aaaccggcta tttgaagcga acatgcgtgt      2820
     ggcccaagaa aaatctcagt tttttaggac aagcgtcgag taccttgggt ttattgtcac      2880
     tagcgagggc gcgagaacag accccgaaaa aatcagaacc ataacagaat accccgagcc      2940
     gaaaactcta ttcggtgtca gatcattctt aggcctcgca agttattaca gatgttttat      3000
     aaaagacttc gcctcaatag caagaccgat ctcaaacatc ctgaagggaa aaaacgggtc      3060
     aattagtaaa tacaaatcaa aaagcatccc tatacagttc aatgaactac aatctcactc      3120
     ttttcataaa ctaaagaaca ttctggcgtc cgaagacgtt accttgatgt accctgatta      3180
     caagaaaccc ttcgacttga caactgacgc atctgccgat ggcataggcg cagtcttgtc      3240
     tcagaacggt cgtcccgtta caatgatttc cagaacgctc aagccgtgcg aaataaacta      3300
     tgcaacaaac gagcgggagc ttctagccat tgtttggtcc ttgagcaaat tgcggcagta      3360
     cctttacggg gtaaaagaca tcaacgtgtt taccgaccac cagccgctaa cctttgcggt      3420
     atctgatagc aatcctaatg caaaaatcaa gcgctggaag gcccgtatcg acgaaacggg      3480
     agcaaaaatt ttatacaagc caggtaggga aaatttcgtt gcagacgcgc tgtcgcgaca      3540
     aaatattaat gcactaagcg acgatgactg tgagtctgac gtggccacma ttcatagcga      3600
     ggcgtcgctg tcttacacaa ttacttcatc agacaagcct gtaaattgct atagaaacca      3660
     attaatttta gagcaagcgc gcttcccgct aaaaaggcaa tttattctat tcggtcaaaa      3720
     aatcagacac cttatcaatt tttcgaacaa cgaaaccctc ctcgaagagg caaaagccgc      3780
     tattaatcct aacgtagtaa acgcaatcca ttgtgatttg cctaccttgg ctcgcgtcca      3840
     gcacgagttg gttaaagctt ttcctgccac aaaattgtat tattgtaaac agatcgttgc      3900
     tgacattttt gatagcaacg agagcaggga gatcgtcata acagagcata accgcgctca      3960
     cagggccgca caagaaaatg taaaacagat catgtccgat tattattttc ctaaaatgac      4020
     gcaaatcgct aacgaagttg tcaccaattg taaaatttgc tcaattgcta agtataaaag      4080
     acacccaaag agacaggaac tcggcagtac acctattcca ggctatgttg gcgaaatgtt      4140
     gcacgttgac attttttcca ctaataagaa atacttttta acctgtgtcg acaaattttc      4200
     caagtttgct gtcgtgcagc ccattgtctc gcgcactatt gaggatttga aagcccccct      4260
     gtttcagttg atgagtctct tccctaaagc aaaaactatc tattgcgaca atgaaccttc      4320
     attaaattct atgaccatca aaacccttct acaaaacaat ttcggcgtag agatagctaa      4380
     cacgccgccg atgcacagct catccaacgg ccaagtggag cgattccaca gcacgatcgc      4440
     tgaaatcgct agatgcatta agcttcaaag gggaaatgtc gacactgtcg atttggtttt      4500
     gttagccaca gtagagtata accatacaat tcattcggta acacaaaaaa caccgtccca      4560
     gattttttgt ccttcatcgg aagctagtaa aggtgttagg gatatgataa acaaggcaca      4620
     ggtgacacag cgcgaaaggg tcaacagaaa taggcaaagc agggtttgga atgtcgggga      4680
     caaggttttc gtaaaggtca acaggagatt aggtaacaaa ttatcaccct tgtatgttga      4740
     agaaaccgtt gaggcagaca tggggacatg ccttcttatt aaggggagga tggtgcacaa      4800
     agacaacctc agatagaatc ccaaatggaa agcagtacat ttctttttca tggcttaaat      4860
     atttaagctt acattttcat tagttatagt cgacactcta tcttaatcca acaatacgaa      4920
     aattattatt aacacatgag tccaataaat aaattaacaa cactcgatct ttatgaattg      4980
     taacaaaact aacaaattgc cgaagtgaat aaaaaacagc atgaaagcag cacaagatcc      5040
     gagattttgt tgtcaatgaa tgaatataaa acctatatag aattacaaga attattaatt      5100
     tctatctctc acgtaaaaag cgaattgtaa ttgccacagt tttgggctat ttagataaga      5160
     atgacttcca actatccaac tcacagggag atagatcaaa atatgtcaat agtattaaga      5220
     ttccaaacgc aattattgtt ccattactaa taatgtcctc gagtcaaaat gtgttccaga      5280
     aaggttttaa aatccctcga catacgtatg gcatggtcga gcaagtccaa ttcgcagagt      5340
     ggtcgacacc gacgagtaac cctggctctc acggctcgcc ggaactacca tcaccaaatc      5400
     atgcgagctg atgtccaagt actcatctat ccagttagga ccaggcgata cagctcatac      5460
     caaggccaaa tccaaccaac tggtggctgt caaggtgacc tccaggcagt ccagttatac      5520
     caagaactaa ctcgaccaac tggtgggacg tcctgggatc agcgacaaga tatgttcggc      5580
     atctgcatcg taacaacccg aaatttataa acacgaacaa cggtcaagca acaccgttcg      5640
     tcatactttc aacagctgtc aacggggaat cttaggcacg tcttcaactt caagaaggat      5700
     tgtcgacaag atgtaacccg aggcacggcg gtccggattg actttaatcg gcatcgtcgg      5760
     cggcctcgcc tcccttggat catctaagga cccaaccaga ccgtcagacc tgatgtcagc      5820
     aaatcgtaag gcgaccgagg actgtcgaat tttagagggg gaat                       5864
//
ID   Gypsy-27_DWil-LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DWil_;
KW   Gypsy-27_DWil-LTR; Gypsy-27_DWil-I.
XX
NM   Gypsy-27_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-301
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
SQ   Sequence 301 BP; 92 A; 51 C; 54 G; 104 T; 0 other;
     agttaactca tattactttg atatgcttac gatatgctga aatgtgagca caagccattt        60
     aatacgttgc tatgtgggaa catgccaaat gcatgtttgg gcagttggca ttattgatag       120
     tatattgtat gccgctacca cttttttggg cgcttgctga ctatttctaa ctggctcata       180
     ttattcttat tcggagggag gaacatggaa cacaatcata tcgcaacaca acattgactc       240
     gtattaatta attttataaa tgattaataa attgaattca tcgaacctga acttattaac       300
     t                                                                       301
//
ID   Gypsy-27_DYa-I repbase;    DNA;    INV; 4758 BP.
XX
AC   .
XX
DT   07-APR-2011 (Rel. 17.09, Created)
DT   07-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DYa_;
KW   Gypsy-27_DYa-LTR; Gypsy-27_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4758
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1840-1840 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2122-2628] - Reverse transcriptase
CC   Positions [3688-4167] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           459..1421
FT                 /product="Gypsy-27_DYa-I_2p"
FT                 /translation="MVSASNNESNKCLAIPMASNNDPEMQMAGNKEPQQCF
FT                 GNQMMRNNVTMQGSDIQRLENELKILKLQNEIDQLKNKQQRSNDTDSSISF
FT                 EILKEIVKVYDGGNNFNVWLSQLLNVQKNFKVGDEMMRALIHYKVKGDAEI
FT                 WLYSSTSATMDTADKMLSHLEKMFVMSKESKLSMRQKLQNCVWIKGEEFSK
FT                 YYNEKWQLADNLALAEDEFLEYVIDGIHDVNLRNLAKSRSFKTGLELLEAF
FT                 RNVELGYVPKPKLPEDRRAGIIRSHEVMQSATIATVGATWPKSAASLRDKM
FT                 GLVTHVACKDMWLRSATNTRSRRAGTTIM"
FT   CDS           2023..4716
FT                 /product="Gypsy-27_DYa-I_1p"
FT                 /translation="MKLRLEEDKPFSFSPRRLAYVEKEKLQGILDDYLKDG
FT                 IIRQSESEYCSPIVLVKKKLGGIRMCIDYRKLNKITAKVRYPMPLIDDLLD
FT                 TLANKVVFSKLDLKNGYFHVYMDEESIKYTSFTTPLGQYEFTRMPFGLTNA
FT                 PSVFQRFINKVFDDMIREKKVIVYLDDIMIATKNIEDHQAILKEVFERLVK
FT                 NKLELRIDKCMFFQSEVKYLGYIISEKGIKADDDGVKAIENFPVPQKVHDV
FT                 QSFLGMCSYFRRFIQNFSTIAKPLHDLTKKDKKFEFGPAQLEAFDELKSKL
FT                 LKTPILALYSPEDETELHCDASSIGFGSILLQRKADGKLHPVFYFSKRTTD
FT                 TESRYHSFELETLAVIYALKRFRVYLQGIEFKIVTDCNSLTMTLNKKDLNP
FT                 RIARWALELQNYLYKLEHRSGTRMKHVDALSRCNTILVIEENTFEDNLVIC
FT                 QNRDEKLRKIKEMLSKEESELYEMRNGVIYKKVKDKLLFYVPEAMEEHVLY
FT                 KYHNELGHVGKDKVTEMVGKSYWFPNVRSKADEHVKNCLKCIAFQGRNGKQ
FT                 EGTVNIVPKGNTPFEVIHIDHYGPVNQKNSTKKHVLVIVDGCTKFVRLYPA
FT                 KSTNSKEAMEALSDYFRAYSRPTTIVSDRGTCFTSDMFEEFLESRNIKHVK
FT                 IATGSPQANGQVERINRDLGPMISKLVDVEKNAQWHKVLEEVEYAMNNTKH
FT                 RSINEHPSIMLFGVNQKGKMLDCLKENVLESMLKRKEINLEKIRQNAEVSQ
FT                 EKVQNYNKKYVDAKRLEANKYKLGDYVVVKNFDSTVGAPRKLITKYKGPYE
FT                 IAKVLDNDRYCIKDVEGFQLTQKPYDGIWAAHNIKPWLREKNSVSNNKNID
FT                 KKNDKEKQKSKVNVNKKTKPNVTNTEISNENVMITRSRAARIRRS"
XX
SQ   Sequence 4758 BP; 1876 A; 699 C; 1023 G; 1160 T; 0 other;
     gaagtggtcg gacctaccca agtgatcatt tcaaaagaaa aataaaaatc ggcattaatg        60
     aattgtaatc ctggcaatta cacattaaaa gaactaaaag ctctgtgcgt gcaaaacaaa       120
     cttaaaagta gtggcacaaa aatcgaattg attaaaagac ttgaaaatat taaatttgag       180
     tggtgcgcgc atgaaaaaaa taaaacagca atgaaaaaaa tcaacgccac agaacaaacc       240
     ggtaaaatag acagggatga aaacaacggc aacggcgaag aacaaagtag cgaaaacgag       300
     atagcaagaa gtagcgacaa cgacggcgac acgatgacgg cgacgtttgc acatacatac       360
     aaaggaatgc aagaaacaga aggttcgaga aaagtaacgg gatcttgtga aatgaatgta       420
     acaacgaaaa tgagatcgag caatgttctg agaggcagat ggtgagcgcc agcaacaatg       480
     agtccaacaa atgtttagcg atcccgatgg ctagcaacaa tgatcctgag atgcaaatgg       540
     ctggcaacaa ggagccgcaa caatgttttg gaaaccaaat gatgcgcaac aatgtaacta       600
     tgcaaggcag cgatattcaa agactggaaa atgagttgaa aatattgaag ctgcaaaatg       660
     agatcgacca gttaaaaaat aaacaacaac gaagtaacga cacagactca agcatttctt       720
     tcgaaatttt aaaggagatc gttaaggtat acgatggcgg aaacaatttc aatgtttggc       780
     tatctcaact tttgaatgtc cagaaaaatt tcaaggtcgg cgacgagatg atgcgtgcgc       840
     tgattcacta caaagttaag ggcgatgctg aaatatggct gtattcaagc acgagcgcta       900
     ctatggacac agcggataaa atgttaagcc acctggagaa aatgttcgta atgtccaaag       960
     agtcaaagtt gagtatgcgg cagaagctac agaactgcgt ctggatcaaa ggtgaggagt      1020
     tctccaagta ctacaacgag aagtggcagc tggcggataa cttagcactg gcagaagatg      1080
     aatttttgga atatgtcatt gacggcatac acgatgtcaa tctacgcaat ctggctaagt      1140
     cgcgttcgtt caagaccgga ttggagcttt tggaggcatt ccgaaacgtt gagttgggct      1200
     acgttcctaa gcccaagtta ccagaagacc gtagagcagg aattatcaga agccacgagg      1260
     taatgcagag tgctacaatt gccacagtcg gggccacctg gccaaagagt gccgcaagcc      1320
     taagagacaa gatggggctt gttacgcatg tggcttgcaa ggacatgtgg ctaaggagtg      1380
     caaccaatac aagaagtcga agggcgggga caacgattat gtaagttata ttgaattaac      1440
     attttgtaca aagaataata tgctgaaccc cattttcata gaatgtctca tagattctgg      1500
     cagcccgata agtattatta aaaaacgttt tataccaagt caaataaaaa tggaaaagac      1560
     tacctcttta agttacgttg gattaaattt aagtaaatta caaatacatg gaagcgtaaa      1620
     atgttcagtt aaattctcaa ataaagatac tcctatgtta ctatatgtcg tggatgatga      1680
     atctatggga tatgctatgt tattgggaag ggatttttta gcaagagtaa aggccaaaat      1740
     tgtaattgaa atgaacacga aaaaatatct gaaataaaaa aagattcgat agttgaagaa      1800
     aatcaaaata aaaataaaga atttaaaagt cattatgaga caaacgcaga cgaacaaaat      1860
     aattttgaaa aacaactatt attaattgat tacaatgata atgaaaaggt atatgagata      1920
     ggttcacaat taaattttaa acaaagatgc gaatttataa atgttattga agaatattat      1980
     attaaaccaa aaagaccgag tgaaccgaat ataaaatgtg aaatgaagct aaggttagaa      2040
     gaagacaagc cgtttagttt ttcgccaagg cgcctggcat atgtagagaa agaaaaatta      2100
     caaggaatcc ttgatgatta tttaaaagat ggtattatac gacaaagtga gtctgagtat      2160
     tgttcgccaa ttgtactagt aaaaaagaaa ttgggtggca ttcggatgtg catagattat      2220
     aggaaactaa ataagatcac ggcgaaagtt agatacccga tgccattaat tgatgattta      2280
     ttagataccc tagcaaacaa agttgtgttc tcgaagttag acctgaaaaa tggatacttc      2340
     catgtttata tggacgaaga atcgataaag tatacatcat ttaccacgcc actaggacag      2400
     tatgagttca caagaatgcc ttttgggctg acaaatgctc cgtctgtttt tcaaaggttc      2460
     atcaacaaag tatttgacga catgattagg gaaaagaaag tgatagttta tctcgatgac      2520
     ataatgatag cgacaaagaa tatagaagat caccaagcta tattaaaaga agtatttgag      2580
     cgattagtta aaaacaaatt agagctacga atcgataaat gtatgttttt tcaaagtgag      2640
     gtgaaatatt taggatatat aatatcagaa aagggtatta aagcagatga cgacggtgtg      2700
     aaagcaattg aaaattttcc cgtgccacaa aaagttcatg atgttcaaag ttttttgggg      2760
     atgtgctcgt attttagaag atttatacag aatttttcaa caatagcaaa gccactccat      2820
     gatttgacaa agaaagacaa aaagttcgag tttggcccag cgcaattaga agcatttgat      2880
     gaattaaaaa gcaagctgtt aaaaacgcct attttggcat tgtacagtcc tgaggatgaa      2940
     acagaattgc actgcgatgc aagttcgata ggtttcggat caatcctctt gcaaaggaaa      3000
     gcagatggta aactacatcc agttttttac ttctcaaaaa ggacaacgga tacagaatca      3060
     aggtatcata gttttgaact ggaaacactg gcagtaatat atgcattaaa aaggtttaga      3120
     gtgtacctac aaggaattga attcaaaata gtaacagact gtaattccct cacaatgacg      3180
     ttgaacaaaa aagacttgaa cccaagaata gcaagatggg ccttggaatt acagaattat      3240
     ttgtataaac tagagcatag atcaggaact agaatgaaac acgttgatgc tcttagtaga      3300
     tgtaatacga ttttggtaat agaggaaaat acgttcgagg acaatttagt tatatgccaa      3360
     aacagagacg agaagttgag aaagattaaa gaaatgctaa gtaaagaaga aagcgaatta      3420
     tatgaaatgc gaaatggtgt gatttacaaa aaagtaaaag ataagttatt gttctatgtc      3480
     ccggaagcta tggaagaaca cgtattgtat aaataccaca atgagttagg ccatgtaggg      3540
     aaagacaaag ttacggaaat ggtcggtaaa agttattggt ttccaaatgt tagaagtaaa      3600
     gcagatgaac atgttaagaa ctgtctaaaa tgtatagctt ttcaaggaag aaatggtaag      3660
     caagaaggaa ctgttaatat tgtaccaaag ggaaatacac cattcgaagt catacatata      3720
     gatcactatg gtccggtaaa tcaaaagaat tctacgaaaa aacatgtatt agtaattgtt      3780
     gatggatgca caaagtttgt gagattgtat ccagcgaaat caacaaactc aaaggaagca      3840
     atggaagcct taagtgatta ttttagagcg tatagcagac caacgaccat tgtttcagac      3900
     agagggacat gttttacatc agatatgttc gaagaatttt tggaatcaag aaacattaag      3960
     cacgtcaaaa ttgcaacagg ctcaccacaa gcaaatggac aagttgagcg aataaataga      4020
     gacctaggac ccatgattag taagctcgta gatgtagaaa aaaacgcaca gtggcacaaa      4080
     gttttggaag aagtagagta tgcaatgaat aatacaaagc acagaagcat aaatgagcac      4140
     ccaagtataa tgctgtttgg agtgaatcaa aaaggaaaaa tgctagattg tttaaaagaa      4200
     aatgtattgg agtcaatgct aaaaagaaaa gaaattaatt tagagaaaat tagacaaaat      4260
     gcagaagttt cgcaggaaaa agtacagaac tataacaaga aatatgttga cgctaaacga      4320
     ctagaagcaa ataaatacaa attaggagac tacgttgtgg tcaagaattt tgattcaaca      4380
     gttggagcgc ctaggaaatt aataaccaaa tataaaggcc cctatgaaat cgccaaagta      4440
     ctagacaatg ataggtattg tatcaaagat gtggaaggtt ttcagttgac acaaaaacca      4500
     tacgatggaa tatgggcggc tcataatatt aaaccatggc ttcgagaaaa gaattcggta      4560
     tcaaataata aaaatataga taagaaaaat gataaagaaa aacaaaagtc taaggtaaat      4620
     gtaaataaga aaaccaaacc aaatgtaaca aacactgaaa taagtaacga aaatgtaatg      4680
     attacaagaa gtagagcggc gaggatcagg agatcctaat tatcaggatg gccgagctgt      4740
     agtagtagta gtagtaat                                                    4758
//
ID   Gypsy-27_DYa-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   07-APR-2011 (Rel. 17.09, Created)
DT   07-APR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_DYa_;
KW   Gypsy-27_DYa-I; Gypsy-27_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-154
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1841-1841 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 154 BP; 58 A; 29 C; 30 G; 37 T; 0 other;
     tgtatataag cagtagtagt ataagtccca ttgcaatatt agaatgtaag aacctaatta        60
     taagagtcgc gaatgtaaac agtacacaca cacttgctga ataaatgaag agtcagtcgt       120
     cgctgaactg tcacagagcg cacactaaag ctca                                   154
//
ID   Gypsy-27_HeAr-I repbase;    DNA;    INV; 4397 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4397
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5575-5575 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..4113
FT                 /product="Gypsy-27_HeAr-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSLVTSITKQAASSAASSAVTAALNASPAPSRDRGTF
FT                 YLPPFDPDVRSHDIRDWCANVDQTISTIGISPHEARMKAILQLKGRAKTWA
FT                 DTWSLQSTTWEQVKQDLIQTFGEEFRYADDVQRWRNFTSEQASSYADYATT
FT                 GWTLFKRVRPEATDAEVIDALITGIYPDFIKCELLRNTPDSLPKLVSVLKT
FT                 YRKRDRPKTDNSTDKNPPNKKPRPFEIPATATNICFRCRKPGHLMRDCKGN
FT                 SVASELNPPATSASQVTPDRRSVECKYCHKKGHLEKNCFRKQNDEKSKPQV
FT                 NFCGPINRCMTTVKIGANTYSCLFDSGADCSLVRKSISGSIPGKRKSVSTI
FT                 FTGIGGIDVMCSQSILAIVEIDQVTVELELFIMEDHQIQFDILIGYNLVQI
FT                 PGLAITLSNSKLTVTRNMIVNECTLSDSETKLNTDIDDPNLLEKLNVVLEK
FT                 FKDNFTSGNKVSEVKTGQLSIRLKNPDKIVQRRPYRLSPIEREKVKEIIDD
FT                 LKQNGIIRDSSSPFSSPILLVKKKDGSDRLCIDFRELNANTVRDNFPLPLI
FT                 ADQIDKLGTARYFTCLDMTAGFYQIPISVESIEKTAFVTPDGQYEFLRMPF
FT                 GLCNAPSVYQRAINNALGDYRDKIALVYIDDVLVISATVEEGLTNLQLVLE
FT                 RLTNAGFSLNIKKCSFLKKSVEYLGNIVENGTVRPSSRKIDALSKTSVPKN
FT                 VKELRQFNGLAGYFRKFVPNFSKIMSPLYELTKTGVPWKWTERQENARNEI
FT                 ISRLTSSPLLTIFNPDLPCELHTDASSLGYGAVLIQRHDNNPHVVGYFSMR
FT                 TTNAESRYHSYELETLAVVKAIKHFRHFLYGRCFKVVTDCNSLKASRTKRE
FT                 LTPRVHRWWAFLQNFQFDIEYRKGDRLSHADFFSRNPVEREDNKIHSENSS
FT                 LQFSVNSSTLDHNWLLIEQKRDPVLKNIVEQLGSDTIPKDIADTYIISQDK
FT                 LLRRKVQIDNKTRKLIIVPQNYRWNLISHYHDSLQHFSWEKVLAKIREQYW
FT                 FPNMSKLVRKFTENCVSCRIRKGMSGAKQVTLHPIDKIAIPFHTIHADITG
FT                 RMNGKRNNTEYAFVFIDAFTKYTHLIYTTDRTSNTAISCLQEVISIFGTPN
FT                 RLITDQDKSMTSADFKNFCQRFGIEHHVVAKGASRANGQVERIMKIIKDNM
FT                 SVVELNKPWHSAIRDLQLAINSTISKSTGISPMELLFGKKCSPPGIKLLQI
FT                 DSDEPIDDLNAVRSLCKLRMDERSFRDKLRFDKGKAHINPFKVGDFVLMHK
FT                 HERHTTKLGPKYEGPMEVLEVLPNNRYKVKHVNLRGCSEKIASHDFLRPAP
FT                 LAQNDPFMDNCDDNNEPTVWADND"
XX
SQ   Sequence 4397 BP; 1381 A; 875 C; 902 G; 1239 T; 0 other;
     gcagcggtgg gatctacctc gcccctgttg aggtcttccg gaaccagggc ccgcaagcta        60
     gccccggcta cgcagccaga ccccaccttc tctctggaac aagtgatgag cctcgtaacc       120
     tccataacga agcaggctgc atccagcgcc gcctctagcg ctgtgactgc tgcgctaaat       180
     gcttctccag cgccgtctcg ggaccgtggt accttctacc taccaccctt tgacccagat       240
     gtcagatcac atgacatcag ggactggtgt gccaacgttg accaaacaat ttcaacgatt       300
     ggtatatcgc cccacgaagc tcgtatgaag gcgattctgc agttaaaggg aagagcgaag       360
     acttgggccg acacatggtc actgcagtcc actacatggg agcaagtgaa acaggacctg       420
     atccagacat ttggagaaga attccgctat gctgacgacg tccagcggtg gcgcaacttc       480
     acgtcggagc aggcgagcag ctacgcggac tacgcgacta cgggatggac gctgtttaag       540
     cgtgtgcggc ctgaagcaac ggatgccgag gtaattgatg ctcttattac tggtatctac       600
     cctgatttca taaaatgtga attgttacgt aatacgcctg actctttgcc caaactagtt       660
     tccgttttaa aaacttaccg caaacgcgac cgaccaaaga ctgacaacag tacggacaaa       720
     aatcctccca acaaaaagcc cagacctttc gaaatacccg caactgccac aaatatttgc       780
     tttagatgta gaaagccagg tcacctcatg cgtgattgta agggaaattc ggtagcttca       840
     gagttaaatc cacctgcaac gtccgcttct caggttacgc ccgatcgtag atcagtagag       900
     tgtaaatatt gccataaaaa gggacattta gagaaaaact gttttcgtaa gcagaatgat       960
     gagaaatcca aaccacaagt aaatttctgt ggccctataa atagatgtat gactaccgtc      1020
     aaaattggag ctaataccta ttcttgttta tttgattctg gtgcagactg ttcgttagta      1080
     cgaaaaagta tttctggttc gattccaggc aaaagaaaat ctgtcagcac aatttttacc      1140
     ggaattggtg gcattgatgt tatgtgttct caaagtatat tggctattgt tgagatagat      1200
     caagtaactg tagagctaga gctgttcatt atggaagatc atcaaatcca gtttgatatt      1260
     ttaataggct ataatttagt tcaaattcct ggacttgcta ttacattgtc aaattcaaag      1320
     ttaactgtaa ctagaaacat gattgttaat gaatgtacct tgtcagattc ggaaacaaaa      1380
     ctaaataccg acatcgatga ccctaattta ttggagaaat taaatgtagt tttggaaaaa      1440
     ttcaaagaca attttacttc tggtaacaaa gtttcagagg ttaaaaccgg tcagttaagc      1500
     attagattaa agaatccaga taaaattgtg caacgtaggc catacagatt atcaccaata      1560
     gaacgtgaaa aagttaagga aataattgat gaccttaaac aaaatggtat aattcgagac      1620
     agttcatctc ctttcagcag ccctattcta ttagttaaaa aaaaggatgg gtctgatagg      1680
     ttgtgtatag attttcgtga attgaatgca aatactgtta gggataattt cccactgcct      1740
     cttattgccg atcagataga taagttaggt acagctcgat attttacttg tttagatatg      1800
     actgcaggat tttaccaaat acctatttca gtcgaatcca ttgaaaaaac agcgttcgtt      1860
     acacccgatg gccaatatga atttttacgc atgccttttg gactttgtaa tgcaccgtct      1920
     gtctaccagc gtgccattaa taatgcgtta ggtgactata gagataaaat tgctttagtt      1980
     tatatcgacg atgtgcttgt aatatctgcc accgtagagg aaggattaac taatctacaa      2040
     ctcgttttag aaaggttaac taacgctggt ttttctttaa atattaaaaa gtgctccttt      2100
     ctaaaaaaat ctgttgaata tttaggaaat atagtagaaa acggaaccgt taggccaagc      2160
     agtaggaaaa tagatgcact ctctaagacc tcggtgccga aaaacgttaa ggagttgcgt      2220
     cagtttaatg gtttagctgg ttacttcagg aaatttgttc caaacttttc gaaaattatg      2280
     tctcctttat acgagttaac taaaacgggc gtaccttgga agtggacgga acgtcaggaa      2340
     aatgctagga atgaaataat ttctagattg acatcctccc cactcttgac aatttttaat      2400
     cccgacttac catgtgaact ccatacagac gctagttctc ttggttatgg tgctgttcta      2460
     attcaacgcc atgataataa tcctcatgtt gtaggctatt tcagtatgcg aacaaccaat      2520
     gctgagagca gatatcactc atatgagctc gaaacattgg ctgtagttaa agccattaaa      2580
     cattttcgcc attttttata cggtagatgt ttcaaagtcg taacagattg taattcactt      2640
     aaagcatcta gaacaaaaag agaactgacg cccagagttc accgctggtg ggcgtttttg      2700
     caaaatttcc aatttgatat tgagtatagg aagggtgacc gactttctca tgctgacttc      2760
     tttagccgga atcccgtaga gcgcgaagat aataaaattc atagcgaaaa tagctcttta      2820
     caattttcag taaactcctc tacgttagat cataactggc tacttatcga acaaaaaaga      2880
     gaccctgttc ttaaaaacat agtagaacaa ctggggtccg atacaattcc aaaagacata      2940
     gcagacactt atataatatc acaagataaa cttttacgac gtaaagttca aattgataat      3000
     aaaactcgta aacttattat agtgccacaa aattacagat ggaatcttat ttctcattat      3060
     cacgatagcc ttcagcattt tagctgggaa aaagtactcg ctaaaataag agaacagtat      3120
     tggttcccaa acatgtcaaa attagttcga aagtttactg aaaattgtgt aagttgtaga      3180
     attcgaaaag gtatgtccgg tgccaaacag gtcactctcc atcctataga caaaatcgct      3240
     attccttttc acaccatcca tgctgacata accgggcgta tgaatggtaa acgtaacaac      3300
     actgaatatg catttgtatt tatagacgct tttactaaat atacgcattt aatttacact      3360
     actgatagaa cgtcaaatac agctatatct tgtttacaag aagtaatttc tatatttggt      3420
     acccccaata gacttataac ggaccaggac aaaagtatga cctcagctga ctttaaaaac      3480
     ttttgtcagc gtttcggtat tgaacatcac gtagtagcta aaggcgctag tcgggcaaac      3540
     ggacaggtgg aacgtattat gaaaataatc aaagataata tgtcagttgt agagcttaat      3600
     aaaccttggc atagtgctat ccgagattta cagttggcta ttaactctac catttctaaa      3660
     agtacgggaa tatctccaat ggagttgcta tttgggaaaa aatgttcacc accaggtatt      3720
     aagctcttac aaattgacag cgatgaacca atcgatgacc ttaatgctgt aagatcgttg      3780
     tgtaaattaa ggatggacga gcgatcattt cgggataaat taagatttga taaaggtaaa      3840
     gctcatataa atccttttaa agttggagat tttgtcttaa tgcataaaca tgaaagacat      3900
     acaactaagc ttggtcctaa atatgaaggc cctatggaag ttctagaggt tctgccaaat      3960
     aatcgttaca aagtaaaaca tgtcaatttg cggggttgtt ctgaaaagat cgctagtcat      4020
     gattttttga gaccagcacc tctggcccaa aatgatccat ttatggataa ttgtgatgat      4080
     aataatgaac cgaccgtatg ggccgataat gattaaatta cctatccacc tttccttcct      4140
     taagcgctgg ctggccacca tgcgtatcct tattcccggt ctaagggcta gatcccaggc      4200
     gggtgatgcc atgtgatatg gctagatcca aggcgggtga tgccaagtca gtgattttgg      4260
     gctagatccc aggcgggtga tgccatgtga tatggctaga tccaaggcgg gtgatgccat      4320
     gcaaagaggt tgaccctaca tgggccatat ctatttaact tgtgcagcgc agagagcgcg      4380
     ctggatcaga atggccg                                                     4397
//
ID   Gypsy-27_HeAr-LTR repbase;    DNA;    INV; 763 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-763
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5605-5605 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 763 BP; 192 A; 94 C; 126 G; 351 T; 0 other;
     tatgggcgcg aaactaatat ttttatttaa attgtaatta ttttgtatca actaccgata        60
     attataatgt tgcaagtaat ttttattgtc atttccgttt ttatattggt atttgttttg       120
     acagctttgt taaatttagt atttatttta ttttgaactt ccgtttgatt taaatttatt       180
     aagtttttgt tttgaacttc cgtttacgat ttaatttaat tattttgtaa atctttcttt       240
     tgactacaac tgtatttccg ttcgtgatat tacaagtgtt tccggctgtg attaataatt       300
     aatattagta tgtctgtaga tttaaaattg tgtttccgtt tatattttat acctgaataa       360
     gtcttcaatt tgatttcaac catgtttccg tttgtattat tttaatttaa tagtaggatt       420
     ttattttaat tcttgtgttt ctttcgtatt tccgtttttg tattaaattc ataatattag       480
     agcttatttt gattcgctag cgtttctgat tggttgattg taggtattgt aatactttta       540
     acattcccgc tctttttgat tgtcaaaaat cggtataaaa aggccgcaat gtggccatta       600
     ggattcattc ttttttcgct cagcagtgaa taaacaactt aagtcggagt aagtcctttt       660
     tattataata tttgttcccc tatttaattg tgtgtgttgg tgtgtgaact ttttggtgga       720
     tataatgtgt gatcgtggtg acgacggcga tgacgcgccg aca                         763
//
ID   Gypsy-27_LMi-I repbase;    DNA;    INV; 5805 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5805
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(991..1674,1341..2234,2238..2507,2511..2906,
FT                 2798..3196,3358..5247,5251..5802)
FT                 /product="Gypsy-27_LMi-I_1p"
FT                 /translation="MDLASDIILSPPPAPKFRNAKEILLRRLSRSPDEALT
FT                 HIIEEVNIGDSTPGQLWRRLRSQVDHSFLPDPALWAIWLLKLPAELQIQLL
FT                 ALSTQPLDARLAYADRAYQVMRHRQLISDSPARGVRQPDTPLPPHFPAIGR
FT                 SKRRAVQQTVEQPVSNRPLPSPSSANPTSTPSQPGMPSATYATTTPSTGAT
FT                 GGSPHPTYPLCWFHVTHGDKARNCRPPCAAASNSQRGDFTGARSSTTGHAS
FT                 SASLSGDRTFQAARRSTDSGATCQQQAATVAVFGQPHLHAFTAGHAICHVR
FT                 HNYSQHRRDRWVPPPHLPAVLVPRNARRQSAQLQATVCSGVKLSARGLNGA
FT                 APRATSHRRRSTAPPSSCPDTTSGRLYITDVSSQTRFLVDTGAEASVIPRN
FT                 LTPSNIKPGPGPLRAVDNSPIRVYGTTELQLQFAQDAIFPWTFYVAEIDTP
FT                 VLGIDFLKHYEFSLDLQTASIHHAPSQRCFRRQFAPAKSQYSVQDDLLSTA
FT                 SECTRLSRNWLCYYGHRSRPHRVRRFTTRQRHAPRLDVISSALASYRARAS
FT                 TPAAASECTATLCPDAPDATQVSDSLAAAQPLVSSVTNGTLHRLNRPRAPR
FT                 CATRQDAYRHINCRPRNLCRRQWDIASFDSNWSSPIHLAKKKDGTYRLCGD
FT                 YRKLNARTIIDNYPIPHIQDFAQQLHGAKVFSVVDCHKAYHQIPMAPDDIQ
FT                 KTAIITPFGLFEYCFMPFGLKNAAQTGSDSLIPSSSSSLFAMLTSTIFILF
FT                 HAFWPKERSADWQRFIDSVLFQFPFCYAYLDDILIFSSSQQEHEEHLARVL
FT                 KALQENGVRINDDKSQLCKETVTFLGHEVSEQGTRPTSDRVSLILQLPLPE
FT                 TYKELRRFLGMINFFRRHIPMRLHYKHRRLFSGRRATTTHSEPLRFFSKKL
FT                 TPSQRKWSAFDRELYAIYAAIKYFREDIEGRPLTVYTDHRPLADAIRNPSG
FT                 DPPPRRWRHLDFISQFTTDVRYVRGADNVVADYMSRICAISAPVDFDRLAR
FT                 LQQTDDEIQELLRSPDTSLRIEPRSLPGSGIPVFCDISTGVARPLVPTAMR
FT                 TDIFHSLHGLSHPGVKPTLKLISERFVWPNMRRDCQSWTRACLSCQRSKVD
FT                 RHTQPPLGSFETPTGRFKHIHLDLVGPLPISDGFRYILSMIDRTTRWVEAV
FT                 PLKDISAATVARTFIDAWISRFGCPSSLTTDQGRQFESALFNNLCDLCGTN
FT                 RFRTTAYHPQSNGLVERWHRTLKTALTCHGGNWTDALPWVLLGIRAAHKED
FT                 LRASLAEVVYGEPLVLPADFVADTDHPSQTDLPTLVERVREHIARTRVPPP
FT                 RAHCTPRVFVHKALEDCEFVMLRDDTVRPPLQPPYSGPHRVLRRSKNTFDI
FT                 SLNGRVVTVSINRLKPAWTLSPACDTPQAGNDDADNPSTSDLTACDDLSPT
FT                 HGVPACDDGLPSAERACDDQVLGSDQADSPPCSHLPVQHVAAMRRTTSSQV
FT                 FLRPPTSMPPSPAPHRRQCTSPIPTPPTQTPMSHTPWTSPPIHRTTPSSCG
FT                 TKRCLSLPPALFRRPSAPVNITLIKHLPLPSSADASKISASLSASGVLHLS
FT                 IPLLPPPSPPSAVPISALDGPSVAHAGWRTTYRLPHLHLSTGRHPRRSTPP
FT                 ASSHAPEARALPAAQPALTAPDTPRRHGHAPLGDRATLRGLTTTRAPRPSP
FT                 DYGPAPRDNTRRRRRRRLPRAPHSQG"
XX
SQ   Sequence 5805 BP; 1234 A; 1993 C; 1357 G; 1221 T; 0 other;
     gtggtgaccc cgacatcgtt cgtcaaccgc gtcacgcgtg aaaaacttcg ttttttcgtg        60
     ttttttgctg tggaactgca tccgacaaca ataccgttac ggccaaacaa tggctttcaa       120
     cagtggacaa attgcaccgg atccccagga gccttcgcaa ttttcggcac aggatgaacc       180
     actcattaaa ttcgaggatg atttaatgaa cgcttccgac tgctcacctc ttccaaccgc       240
     gccgcgcagt gttttccaac aactggcatg gacttcggca ccgtatgctc ccgctgccac       300
     gttgcctcat cccgacagaa aaccagtgtg cacccaagga cacgagtgtt tcacacagtg       360
     ttttaacgca agtacttcga ttcctgcaaa tgtgatgcca tatcggtctg cctgtgcctg       420
     tgacaaacag ttcagtgagc gtgctgtacc cggcgtcccg acgccgcccg ctgcgccgcc       480
     acagttgttc gcgcgcccgt tttccgatcc gcacgcgacg cccggcgtct tcgtcgcgac       540
     gccgtctgcc gcgccacccg cgtcgcgctt acccacgtgc gttccgcagt tcggtccgac       600
     gcgtgcgccg ccgtacaacc cgcactcgac aaccggcgtc accgccgcga tgccgcatcg       660
     cgcgacgccg cgtgcacacc gacgtacgac ccacactcaa cactcggcgt cgctgctgcg       720
     acgcctcctg ccgcgcctgc cgcgccgcgt gacgccgcgt tcgcgcggcc gtacgaaccg       780
     ctaacgacgc ccggtcttcg tgatcagcgt cccttggtgg gaccacagtt ggacacaact       840
     ccacaccact cacgtttccc gaagctgcca ccactggaca aatctaatcc tataacatgg       900
     ttcgcgttgg tggaatctat cttcgagtta cacaacgtca cgagcgagga cgctcgattc       960
     ttgtgtttag tcacacacct ccacgaccag atggacttgg ccagtgatat cattctatcg      1020
     cctccacccg caccgaagtt ccgcaacgcg aaggagattc ttctacgacg cttgtcacgc      1080
     tcgccagacg aggcattgac tcacattatc gaggaggtaa acatcggcga ctccacccct      1140
     ggccagctct ggcgccgcct gcggtcccaa gtggatcact cctttctgcc ggacccagcg      1200
     ctgtgggcta tctggttact caaactgcca gccgagctac aaatccagct cttagcactg      1260
     tcgacacagc cactcgacgc tcgtctggcg tacgccgaca gggcgtacca agtgatgcgc      1320
     caccgccagt tgatttctga ttcaccggcg cgcggagttc gacaaccgga cacgcctctt      1380
     ccgcctcact ttccggcgat cggacgttcc aagcggcgcg ccgttcaaca gacagtggag      1440
     caacctgtca gcaacaggcc gctaccgtcg ccgtcttcgg ccaaccccac ctccacgcct      1500
     tcacagccgg gcatgccatc tgccacgtac gccacaacta ctcccagcac cggcgcgaca      1560
     ggtgggtccc cccaccccac ctacccgctg tgttggttcc acgtaacgca cggcgacaaa      1620
     gcgcgcaact gcaggccacc gtgtgcagcg gcgtcaaact ctcagcgcgg ggattaaacg      1680
     gcgctgcccc ccgcgcaact tctcacaggc gccgctcgac tgctccgcct tcgtcctgtc      1740
     cggacactac ttctggcaga ctctacatta ccgacgtgtc ctcacaaacc cgtttcctgg      1800
     tagacactgg cgctgaggcc agtgttattc ctcgcaacct cacgccgtca aatatcaaac      1860
     ccggcccagg tccgttacga gctgtcgaca actcgcccat acgagtttat ggcactactg      1920
     aactccaact acagttcgca caggacgcta tatttccttg gactttctat gttgccgaga      1980
     ttgacacacc tgtgctagga attgacttcc tgaagcatta cgaattttcg ttggaccttc      2040
     agacggcgtc cattcatcac gccccttctc aacgatgttt ccgcagacag tttgcacctg      2100
     caaagtcaca gtatagtgta caagatgatc ttttatcaac tgcttccgag tgcactcgcc      2160
     tctcgcgaaa ctggctatgt tattatggac atcgctcgcg tccgcaccga gtgcgacgtt      2220
     ttacgacgcg acaatgacgt cacgcgcccc gactcgacgt catctccagc gcactggcga      2280
     gctatcgcgc gagggcgtcc acacctgcag cagcctcaga gtgtactgcc accctctgcc      2340
     ccgacgctcc tgacgccaca caggttagtg attcgcttgc tgcagcgcaa ccgctagtat      2400
     cgagtgtgac aaacggtacc ctccacagac ttaatagacc gagggccccc cggtgcgcca      2460
     caaggcaaga cgcttatcgg cacataaact gcaggccgcg aaacttatag tgcaggagac      2520
     agtgggatat tgcgtccttc gacagcaact ggtcgtcccc cattcatttg gcaaaaaaga      2580
     aagacggcac ctaccgactg tgtggtgact accgcaagct taacgccaga acaataattg      2640
     acaattaccc gataccccac attcaagatt ttgcacagca gcttcacggc gctaaagttt      2700
     tctcagtggt cgactgccac aaggcatacc atcagattcc gatggcacca gacgacatac      2760
     aaaaaacggc tatcattact ccttttggac tttttgaata ctgtttcatg ccttttggcc      2820
     taaagaacgc agcgcagact ggcagcgatt cattgattcc gtcctcttcc agttcccttt      2880
     ttgctatgct tacctcgacg atattttaat tttttcgtcc tcccagcaag agcacgagga      2940
     acatctggca cgcgtactta aggcattgca agagaacggc gtccgtatta acgacgacaa      3000
     gtcccaactg tgcaaagaaa ctgtcacttt ccttggacac gaggtttcag agcaaggcac      3060
     gcgccccacc tcagatcgcg tttcactcat attacaactc ccacttccag agacatataa      3120
     agagctgcgc cgcttcctgg gaatgattaa ttttttcagg cgccacattc ccatgcggct      3180
     tcactacaag caccgttaac cgatgcacta gcaggcaaca acacgtcagg cgagcaaggt      3240
     cccttggacg gacgatatga ctgccgcgtt cgaacaatta aagacagcac tcgctcgcgc      3300
     agtcacgttg gcacatccca tcccggatgc taaaatttca attaccacgg acgctagcga      3360
     ctcttcagtg ggcgccgtgc tacaacaaca cattccgagc cgttacgttt cttctcaaaa      3420
     aaattaacgc cctctcaacg taaatggtcc gcgtttgaca gggaactcta cgctatttac      3480
     gctgccatca aatattttag agaggacatt gagggccgcc ctctgactgt ctataccgat      3540
     caccggccac ttgccgacgc tatacgtaac ccgtcaggtg atccccctcc tcggcgctgg      3600
     cggcatttag actttatttc acaatttaca accgacgtaa gatacgtgcg cggcgcagac      3660
     aatgtcgtag cagattatat gtcgcgcatc tgcgctatct cggcacccgt ggattttgac      3720
     agactcgcgc gccttcagca gacggacgac gaaatacaag agctgctccg ctctccggac      3780
     acgtcactgc gcattgaacc gcgctcgtta cccggctcgg gcatcccagt cttttgtgac      3840
     atttccaccg gcgtggcgcg ccccctggtt cctacggcga tgcgcacaga cattttccat      3900
     tctcttcacg gcctttccca ccctggggtt aagccgacct taaagttgat ttccgaacga      3960
     ttcgtttggc cgaatatgcg acgcgactgc cagtcgtgga ctcgggcgtg cttatcgtgc      4020
     caacgcagta aagtcgacag gcacacgcaa cccccactag gcagtttcga aacccccaca      4080
     ggccgattta aacatattca tttggatctc gttggccccc ttcccatttc ggacgggttt      4140
     cgttatatac tatcaatgat cgaccgtact actcgatggg tcgaagccgt cccgctcaaa      4200
     gacatttccg cagcaactgt cgcgcgtact ttcattgacg cgtggatatc gcggttcggc      4260
     tgtccgtcct cacttactac ggatcagggg cgacagttcg agtcggcact tttcaataac      4320
     ttgtgcgatc tgtgcggcac caatagattc cgtacgacag cctaccaccc acagagcaac      4380
     gggcttgtag agagatggca tcgcaccctc aaaacggccc tcacgtgcca cggcggtaac      4440
     tggaccgacg ccctcccgtg ggttcttctc ggcatccgcg ccgcacacaa ggaagatcta      4500
     cgcgcctccc tggccgaggt agtttacggc gaaccactcg tacttcccgc ggatttcgtc      4560
     gccgacactg accacccctc acaaaccgat ttgccaacgc ttgtcgaacg cgtacgcgaa      4620
     catatcgcgc gcacgcgggt acccccgccg cgtgcccatt gtacaccgcg tgtgtttgta      4680
     cacaaagcgc tggaggactg cgagtttgta atgctgcgtg acgacaccgt gcgcccccca      4740
     ctacagccgc cttactccgg cccgcaccgc gtcctacgca gatccaagaa cacatttgac      4800
     atttccctta acggacgcgt ggttacggtc tccatcaacc ggctgaaacc cgcgtggacg      4860
     ctttcccctg cgtgtgacac cccacaggca ggaaatgatg atgcagacaa cccctcaaca      4920
     agtgatctta cagcgtgtga cgatctttcg cctacacacg gtgttcctgc atgtgacgat      4980
     ggcctcccga gtgccgagcg tgcgtgtgac gaccaagttt taggcagtga tcaggcagac      5040
     tcgcccccct gcagccacct cccggtgcaa cacgtcgccg caatgcgccg gacaaccagt      5100
     tcgcaggttt ttctccgacc cccaacttcg atgcctccca gccctgcgcc acaccgacga      5160
     cagtgcacct cgccgattcc cacgcccccg acgcagacgc ctatgtcaca tacgccgtgg      5220
     acgtctccgc ctatccacag gacgacgtga ccgtccagct gcgggacaaa acgttgtttg      5280
     tccttacctc cagccctgtt ccgacgcccc tccgctcctg taaacatcac cttaatcaaa      5340
     cacctccctt taccctcttc cgccgacgct tcaaagatct cggcatcttt aagcgcgtca      5400
     ggtgtcctac atctgtcaat tcccctcctt cctccccctt ccccaccctc tgctgttccg      5460
     atctccgcgc tggacggccc ctccgtcgcc cacgctggtt ggaggactac atatcgtctt      5520
     ccccaccttc acctctccac cggacggcac ccacgacgtt ctacgccacc agcgtcatcg      5580
     cacgcgccgg aagcgcgcgc cctccccgcc gcacagcccg cgctgacagc ccccgacacg      5640
     ccacgccgcc acggccacgc ccccctcggc gaccgcgcca cactgcgcgg cctcaccacg      5700
     acgcgcgctc cacgcccctc gccggactac gggccagcac cacgcgacaa cacacgacgg      5760
     cgtcgacgcc gacgcctccc ccgtgctcca cactcccagg ggggg                      5805
//
ID   Gypsy-27_LMi-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-207
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 207 BP; 53 A; 46 C; 53 G; 53 T; 2 other;
     tgtggcgtcc cgcgaatcga tatcacacac gggagccaaa agtaacctct ttggtcgagg        60
     tacacgatcg ctgcctcagc agcaagacag ccagtgttgc tcgagaagtt gaaagtgtta       120
     cacctctgtt ggttgtagca cgtaaataaa gtgactttct gccagcattt ccggtgttat       180
     tmwatggtag tgttggtaga aaccaca                                           207
//
ID   Gypsy-27_MoPha-I repbase;    DNA;    INV; 5110 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5110
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1106-1106 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..1127
FT                 /product="Gypsy-27_MoPha-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MLSRTPTRTSPSVTPAEEEAGMPVTRSKAREQASELV
FT                 SAEAATLQAVLLEIRQLRQERDEQARREAELRAKLQQHEDELIRLQRNQIS
FT                 QSVVRACGDSGSCLAEEESVRAECGFKLKPDTYDGSVPLREFFAQFNLIAS
FT                 ANRWSDSIKTIALASCLRGKARSVLETVQNLDNLEFAELKSKLELRFGEGH
FT                 LSQNFYTQFTNRKQKFGEDLAALGLDLERLSRLAYPECPYAVLDKIACAQF
FT                 ISAISDGFIKRTLQLENITSLNLAVERAKTLKIIQGEGFKRRKGNFNKNFW
FT                 KGGKGGMRGEEETNVEKGKENGRDEKVRKENSRGSRFSANRGECWTCGKIG
FT                 HFRSDCPSEKGNTA"
FT   CDS           1109..4417
FT                 /product="Gypsy-27_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RKGKHGLVELFGESSARRNYSPNVKQPFNIKVNRIKR
FT                 NFDYFLFKERADGKECSFKVDTGSDVTIINSKFVTKEKRKILSEHLNLRYP
FT                 TGEKVPVESQVEIKVEIGKYVVQVPMFVAEINDDCLLGVDFLKIVNLERTF
FT                 ENVFGTPELTEEVARIEVSCEKVPISLKELFEENSQNLNCLEKKIFANFLT
FT                 EFEDVFSENVVAGNCNVVEHVINVQDSSPIKQVPRRIPIQMRGEVDKIIEE
FT                 MRSRGVIEESQSPWVSPAVLVKKKDGSIRFCVDFRKLNAVTIKDSYPLPRI
FT                 DDILDQLSGNSWFSTLDLKSGYWQLKIRSEDKIKTAFSIGKGLWQFTVMPF
FT                 GLCNAPATFERLMEEVLRDLISKICLVYLDDVIIYGKSFAEMMENLEKIFL
FT                 RLRKVNLKLNPKKCVLFSKNVKYLGHVISAEEISTDSEKVAAVREWPVPHT
FT                 KKQLRSFLGFASYYRKFVKDFSSIAKPLFALTESQTKFVWEGKCQEAFEKL
FT                 KCMLTSSPILSFPKGESEFILDTDASNIGIGAVLSQNQEGKEKVIAYFSRV
FT                 LSKAERNYCVTRRELLAIVDSIKCFRHYLLGRKFLIRTDHVSLRWLLSFRD
FT                 LEGQLARWLERLQQYEFDIVHRKGRCHGNADGLSRRLCETHGCEYCAKVER
FT                 RDAEINGKAVARIVFEGENLEDWRRDQTQDSSISVFLRGKEEGVRPPRTGF
FT                 TSRDVSSRIYWSYWDALILKDGILYRKWEAPNLKSNFLQLIVPRKRIKEVL
FT                 QEAHDSPSGGHFGINKTLEKIRKRFFWATCKQDVEEWCRTCKICISKKGPL
FT                 GKGKSPLQIYNVGVPLERVQIDILGPLPATKIGNRFLLVIVDCFTKWVEAF
FT                 PLKNFKAKTVADVFVNQFVSRHGVPVEVHTDQGKNFESKLFSELMRLLGIR
FT                 KTRTTPLHPQSDGQVERQHQTITNYLAKFVSENQKDWDRWVPMFLLAYRSS
FT                 KHESTGMTPAELYFARDLRLPLDLLRGGPSKLQEEGSSSEGNFVENLQAKL
FT                 EEIHSCVRERMNLKSSQMKAHYDRKTREVLFQEGERVWFYNPRRVKGKAPK
FT                 LQGDWEGPFLVVKKLSDVVYCIQKTSRHKKKVVHANRLAPFLRRNF"
XX
SQ   Sequence 5110 BP; 1464 A; 873 C; 1321 G; 1452 T; 0 other;
     tttttggggg ctcgtccgag ccacgaacaa tagacaacga gctttgatcg aaaggaatgt        60
     tatcgaggac gccgactcga accagcccta gtgtcacgcc tgcggaagag gaagccggga       120
     tgcctgtcac taggagtaag gctcgtgagc aggcttcgga gcttgtgtcg gcggaagccg       180
     ctacgctaca agccgttctc ctcgagatcc ggcagttacg ccaggagcgc gacgagcaag       240
     ctcggaggga ggcggagctc agggcaaagc tacagcaaca cgaggatgag ctcatacgtc       300
     tccaaagaaa ccagataagt caatctgttg ttagagcgtg cggggattcg ggctcgtgtc       360
     tcgcggagga ggagagcgtg cgcgcggagt gcggttttaa gttaaagcct gatacgtacg       420
     atgggtcggt cccattgcga gaattctttg cgcaatttaa tttgatcgcg tctgcaaatc       480
     ggtggagcga ctcaattaaa actatcgcgc ttgcatcttg cctgcgggga aaggcacgtt       540
     ccgtgctcga gacagtgcag aatttagata atctcgaatt cgcggaatta aaatcgaagc       600
     ttgagttacg tttcggagag ggccatctgt ctcagaattt ttatacgcaa tttacgaacc       660
     gaaaacagaa atttggggag gatttggccg cgcttggttt ggatcttgaa agactctcgc       720
     gcctcgctta ccccgaatgc ccgtacgcag ttcttgataa aatcgcctgt gcgcaattta       780
     tttctgcgat ttccgatgga tttattaaac ggactctcca acttgaaaat ataacatcat       840
     taaatttggc tgtagaaaga gcaaaaactt taaaaattat tcaaggggag ggtttcaaac       900
     gaaggaaagg gaattttaat aagaattttt ggaagggagg taagggaggt atgcgcgggg       960
     aggaagagac gaatgtggag aaaggaaaag aaaatggaag ggatgaaaaa gttcgaaaag      1020
     agaattcgcg tggcagcagg tttagcgcca accgcgggga atgttggact tgcgggaaga      1080
     ttgggcattt ccgctctgat tgtcctagcg aaaagggaaa cacggcttag tcgaactttt      1140
     cggggagagt tcggctagaa gaaattattc cccgaatgtt aagcaacctt ttaatataaa      1200
     agttaataga attaagagga attttgatta tttcttgttt aaagaaagag cagatggaaa      1260
     agagtgttct ttcaaggtcg atacgggctc tgatgttaca attataaata gtaaatttgt      1320
     tacaaaggaa aagagaaaga ttttatcgga acatttaaat cttagatatc ccactgggga      1380
     gaaggtccct gttgaatctc aagtcgaaat aaaagtggaa atagggaaat atgttgttca      1440
     agttccgatg tttgttgcgg aaataaatga tgattgtctt ctcggggtag atttcttaaa      1500
     aattgttaat ttggaacgaa cttttgaaaa tgtttttggt actcctgaat taactgaaga      1560
     agtagctcga attgaagttt cttgtgaaaa agtcccaatt tccttgaaag aactctttga      1620
     ggaaaattct cagaatttga attgtttaga gaaaaaaatc tttgctaatt ttctgacaga      1680
     atttgaagat gtattttctg aaaatgttgt tgcgggaaat tgtaatgttg tcgaacatgt      1740
     cataaatgtg caagactctt ctcccattaa acaggtacct cgccgaattc caattcaaat      1800
     gagaggagag gtagataaaa ttattgagga aatgcgatct cgaggagtaa tagaggaatc      1860
     gcaaagtcca tgggtttctc cagcagtttt agtaaaaaag aaagatggct caattagatt      1920
     ttgtgtggat tttcggaagc tcaatgcggt aactattaaa gattcatatc ccctccccag      1980
     aattgacgat attttggatc aactctcagg taattcttgg ttttctacct tagatcttaa      2040
     gagcggttat tggcaactta aaattcgttc ggaagacaaa ataaaaacgg ctttctctat      2100
     cggcaagggg ctttggcaat ttacggtgat gccctttggt ttatgtaatg ctcctgctac      2160
     gtttgagcgc ctcatggagg aggttttgcg agatttaatt tcaaaaattt gtttggttta      2220
     tttagacgac gtaataattt atggaaaaag ttttgctgag atgatggaaa atcttgaaaa      2280
     aatattttta cgattacgaa aagtaaattt aaaattgaat ccaaaaaaat gtgttctttt      2340
     ttcaaaaaat gtaaagtatc tggggcatgt aatttccgcg gaggaaattt ctacggattc      2400
     tgaaaaagtt gctgccgtta gagaatggcc cgttcctcac acaaagaaac aattacgtag      2460
     ttttctcgga tttgcttcgt attatcgtaa atttgtgaaa gatttttctt ctatagctaa      2520
     acctcttttt gcgttaacgg agagtcaaac taaatttgtt tgggaaggga aatgccagga      2580
     agcttttgag aaattaaaat gtatgctgac ttcttccccg atactttctt tcccgaaagg      2640
     ggagagtgaa tttattttag ataccgatgc ctccaatatt ggaattggcg cggttttatc      2700
     tcagaatcag gaggggaagg agaaggtcat tgcgtatttt agtcgtgttt taagtaaggc      2760
     cgagcgtaat tattgtgtaa ctcgccgtga acttttagcg atagtggatt caattaaatg      2820
     tttccgtcat tatcttttgg gacggaaatt tttgatccgt acggatcatg tttcgttacg      2880
     ttggcttttg tcttttagag atttggaagg acaattggct cgctggctgg aaaggctcca      2940
     gcagtacgaa tttgatattg ttcatcggaa aggacggtgt cacggtaacg ctgacggatt      3000
     gtccagacgg ttatgtgaaa cgcatggttg tgagtattgt gctaaagttg agcgaagaga      3060
     tgctgaaata aatggcaagg cagtcgctcg catcgttttc gaaggggaaa atttggagga      3120
     ctggcgtaga gatcagacac aagattcaag catttcggtt tttcttcgag gcaaggagga      3180
     aggagttcgc ccacctcgca cagggtttac ttcgagggat gtttcttctc ggatttactg      3240
     gtcgtactgg gatgccttaa ttttgaaaga cgggattctc tataggaaat gggaagctcc      3300
     aaaccttaaa tccaactttc ttcagcttat tgttcctcgt aaacggatta aagaagtctt      3360
     gcaggaggca cacgactctc cttccggagg acattttgga ataaataaga ctttggaaaa      3420
     gatccgtaag cgtttcttct gggctacctg caaacaggac gttgaagaat ggtgcagaac      3480
     ttgcaagatc tgtatttcta agaagggtcc cttaggtaaa gggaaatctc ctcttcagat      3540
     ttataatgtt ggagttccct tggagagggt tcagatagat attcttggtc ctcttccggc      3600
     gactaagatt gggaatagat ttttgctcgt catcgttgat tgcttcacaa aatgggtgga      3660
     agctttccct ctgaaaaatt ttaaggcaaa gacagtagct gacgtttttg ttaaccagtt      3720
     tgtttccaga cacggggtgc ctgtggaagt ccatacggat caagggaaaa attttgaatc      3780
     gaagcttttc tcggaattga tgagacttct cggaattaga aaaacaagaa ctactccact      3840
     tcatcctcaa tctgatgggc aggtcgaacg tcaacatcaa acaataacaa attatttggc      3900
     aaaatttgtt tctgaaaacc agaaagattg ggatcgttgg gttcccatgt ttcttttagc      3960
     ttatagatca tcgaagcacg agtctaccgg tatgactcct gcggagcttt atttcgcacg      4020
     tgatcttaga ttacccttgg atcttttgcg aggaggtcct tcgaaacttc aggaagaggg      4080
     gtcgtcttcg gaaggaaatt ttgtggaaaa tcttcaagca aagttggaag aaatccattc      4140
     ttgtgttaga gaaaggatga atttaaaatc ttctcaaatg aaagcacatt atgatcgaaa      4200
     aactagggaa gttctttttc aggagggaga aagagtctgg ttctacaatc ctcgtagggt      4260
     taaaggtaaa gctccaaagt tgcaaggcga ctgggaaggc ccctttttag tggtcaagaa      4320
     gttaagtgac gttgtttatt gcattcagaa aacttccagg cataaaaaga aggtggttca      4380
     tgcgaatagg ctggctccgt ttttgaggag gaatttttag aaatgttggg acaaatcgga      4440
     gttcggaagc ccgtcttgag aaagaattac tttttttttt ggaggaaagg ggaacttgaa      4500
     ttttttaatt ttaacaattt attgcgggaa atttttgttt ttctttttca gaagcgaggt      4560
     cttccgtctt ggagaaggta ttcctaagag gattcttcga gaattgtctg gaagacgtcg      4620
     atagtgtaat ctttcataag aaaagaattt aagaagaccg tctcgctcac ggttttcgac      4680
     cgtggtttcc cgtgagactt tgggcaaatg ccgagacggg gacaagggtg ctcttatagg      4740
     gcgagaggga tccacgggaa attacctccc ccttgttcga agaggagcgg cgtcggcagc      4800
     ggttacgagg agcaacggca gagtggttca cgcagtcttg gaagcggaat tcctgaggag      4860
     ttttcccgaa gctggggggg gggagcctgg ttggctgcct ccgagaaggg gactcgagga      4920
     aaaggaatta agatcccgta gatgcagaag aacgggaatg gaagtgtggc ccggtaacct      4980
     gaagcagcag ctcagggtag ggcaggaaat cactctgaag tcctgatgtc tgcagggaaa      5040
     cgttttaccg cttgaaaact gccctcctcg attgtcggga cgacaatctt ggtggggggg      5100
     gggggggcag                                                             5110
//
ID   Gypsy-27_MoPha-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-269
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1191-1191 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 269 BP; 60 A; 67 C; 73 G; 69 T; 0 other;
     tgttacgatc gcgctggacg cacgatgcat ttcgactctc ggctgcgcgg cgtcctcctt        60
     agcaaccacg ctgtttacgc ggacgcgctc gtcagatttg atccggagct gtcaacccga       120
     acggacgtgc tccgtttctt tgtccgaaaa cgttctgtat ttcaagcttt acattaaaga       180
     gctttgaaag agagaaaacg tctttcttat ttcgtgcggg agtgcgtgag tgagagagcg       240
     aaaggcagtt ttgccgggca aacgcaaca                                         269
//
ID   Gypsy-27_MSe-I repbase;    DNA;    INV; 5256 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5256
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 904-904 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5256 BP; 1870 A; 878 C; 987 G; 1521 T; 0 other;
     gatagcgccc aacgttaaaa caaaacgggt tattcgatac attttagtta acattttttt        60
     gtagtatttt tttatctacc gccatacata gtgttgttat ttaagcaata aggcaaagta       120
     aaattttgtt tagatttaac agtatgaaat gatttatatc gtgcattatt gttaagtaag       180
     aattaattta tgtgatctac gtataatcat ccgtgtctgt ttaagttcta acgtacgatt       240
     ttgttggata ctcactattg ttaaatgatg tatattatca gtgttatctt agctagtaat       300
     tttattaaat tattatttgg ttaagaacac atttacgggg ttctattaga taaataccta       360
     catttgtaat ttagttctat gtaaacagta ggcattaagt aatcactgct aacttgagaa       420
     aggaatacat cccgataagt ttaccctttt gtgcacagct ctgagtaact atcttaagat       480
     ttttttttgt cccttatttc tgtactatgg atccccagta cttattaaag gatgaagttg       540
     aatttgaact cgcgtgtaga ggttatacac acgggggggg attggtttcg gcgttaaaga       600
     gaatattaaa gaaaatgata caggttgaaa gtacacaaga agtttcctac gctataaaag       660
     caccacagtc atgtactgaa actccagagt tacaactaga gatttgtgcg gataaaatca       720
     atgcaatttt gtgctatgtt tcggaattaa atgaaaaacc tgaccagcaa ctttacaaac       780
     gcttagtatc acgtttaatt catatagtaa atagactaaa actggtgtcg cctaaagacg       840
     aattagagga agaaaagaag aaactattac tagataaaac tgccttatta atgtccgact       900
     tagaagtaaa agatgaatta gaggacgggg atgacataac accagaaatg aaagaagcat       960
     tacaaacttc gttaggtgag gatagtaaga aaattttaaa tctaattgat aagaaatcga      1020
     ttgtagcccc tacggcacca tccacttcaa agtctgagaa tgaaatagca tcgaaaagcc      1080
     aacgccaaaa ttatgaagat aaaaagtaaa ttttgcacaa gatgatttag accttgcgga      1140
     tttcaataat gaaaaattta gacactccaa attatttaac tctactacat ttgaagatga      1200
     ccggccccca tgtaaacaaa aactagtccc tattagtcaa tggggtgtcc attattcagg      1260
     tgataatagt tgcagcgtca atgcattcat agaacgtgtg gatgagctca aggaagccag      1320
     gaatgctact gacttggatt tatggcgaca tgcaatagac ttctttaagg gtgatgctct      1380
     aatttggttt cgagcaaata gagaatacgt taatgactgg aaagaactag ttatattact      1440
     gaagcgcaca tttcaggcac cgtattacca agaagaattg cttgccgaag ctaaatctag      1500
     aactcagggt aaacatgaat ctgtgcttat ttttattgcg gttttacaaa atatgtttaa      1560
     tagacttccc aacaaaattc cggaaacgga aaaaattatg atcatagtta aaacctccag      1620
     ccatattatc aaagagcagt atgtagagat acatttactt cgatcgcaga tctaattaac      1680
     gtcctaagaa tagtggagcg aactaaaata aattgtgaca actttcaaga acctaaaact      1740
     ttcataaact ctctagagcc agacttagca tacaaggcta cgtcgacccc aatggtcgat      1800
     aaggaaattc tagagataaa aaatgttgca ataaacaatg gcgctaaaat taaaatacgt      1860
     tgttggaatt gtcgggaatc ggggcacgca tttcgatcat gtccagtacc taaacagcga      1920
     ttattctgtt ttaaatgtgg gcgcttcggc gttacttcca aagattgcac gtgtaaggga      1980
     aacgctatag gggaaagcgc aaaacctgcc aactgagctt tcccttgaca gaaatgataa      2040
     agaatggcag gactggttgt catttgttcg gaatttcatg tcccaagacg tattatctct      2100
     aacatttaaa aaacaatttg ataacaggca ttatgtacac cttaacatct taggatacac      2160
     ttgtagtggt ttattggatt ctggcgccac tcgtacagta gcaaattcta atttcgtaaa      2220
     tattttaaaa cgccttggag taaaaacaca aaaacttaaa cgcatgaaca tatcaactgc      2280
     agatggaacc agtcattgca ttaaagaatt atttgatgta ccaatgcaat ttaacaacca      2340
     attttatatt attcctgtgt tacatatgcc aggtttagca caaacattga tattgggtag      2400
     ggactttttt gacaaatttg gtatctcgtt tcagtttaca tctgatttga tgcaagaacc      2460
     agccattgtg aatacaatta ctcatcaatc agtaacaatt atgagtaagg aggatttaaa      2520
     tccagatcag aataaagctc tggcaaatat catcacggaa attaggaaca agattgggat      2580
     agggcttggc agaactaaaa ttattaaaca cactatagat acaggagaca gtaagccggt      2640
     acatttgaag caatataact tttcgccagt tattaggaaa gaaatagaaa aagaattaga      2700
     tgaaatgtta gataaagatg tggttgaacc atcttacagt ccctggtgct cacctttggt      2760
     tatggttagg aaacctaatg gtggcaatag gctttgttta gatagtagac agctcaataa      2820
     ggtcaccaaa cgagatacat atcccttgcc gagggtgtcc tcaatcttag acaatctacg      2880
     caatgcaaaa tttcttagca ctattgatct aaagtcagca ttttggcaaa ttgaattaga      2940
     ggaaaatagc aaagaaaaaa cagcatttgc tgtgccgggc aggggattgt ttcaatttaa      3000
     agtcatgccc ttcggtctag ttaacgcttc acaatcacaa caaaggttaa tggacatttt      3060
     atttcatgcg ttagaaggaa aagtttgggc ctacctagac gacatcatag tatgttcgga      3120
     gaacttcgat gagcacataa aaatattgaa agatgttaca aacattctga aagaagccgg      3180
     gttaacaata aatgtagaaa aatgtaaatt tgctagacct agtctgcgtt tcttaggata      3240
     tattattgat aaggatgggt tacgtacaga tcctgataaa gtttcagcca ttataaattt      3300
     tcctagacct agaaaaataa cagatttaaa aagatttata ggaattgcca gctggtatag      3360
     aagatttgtc aaagattttg ccactattgc ggcaccttta cataatctaa caaaaggtaa      3420
     aagaaacaag aagtttgtgt ggtcagatga agccgacaag gcatttgtac accttaaaac      3480
     gttgctaact accactccag ttatttcatg cccaaatttt accaaaccct ttataataca      3540
     atgtgatgcc tcaaataaag gaatcggtgc agttttgtgc caaaaactca ataacattga      3600
     acaacctata tcttatttga gtaggaagct aaacgagagg gaacagttgt attcgacttc      3660
     agaaagagaa ctattaagta ttgtttatgc catagaaaaa ttcagaccat atattgacgg      3720
     aactcacttt acaattgtca ctgaccacag tgctcttaaa atgttacaca aaatgaagga      3780
     tccccatggc agattggcca gatgggcaat gaaaatacaa caatttagtt tcgatataat      3840
     tcatagacct ggtaggtaca atattgttcc agatgcgtta tcgcgatcta taaatgcact      3900
     cactgataac agctacaaca ttctaatatt ggacaaacac aaagacgatt ggtataaaaa      3960
     gaaagtggca aaaatagaga aaactgaaga ggtcaactcg gactggcaag ttaaaaatgg      4020
     tttactgtat aagaaaatat gtctaaagca atttccagat aaaacttgtg actggaaatt      4080
     atatataccg aaatcactta aggggagatt ttaaagcgat gtcacgataa tagtacagca      4140
     gggcatttgg gagtaagaaa aactctgttt agaataaaac aattgtattt ttggcctaac      4200
     atgctaacag atgtgaaaca gtatgtggga agatgtgata tatgtgctcg tgcaaaagtg      4260
     tcgcagcaat tacccttggg gcaaatgggg caacatagaa cagtgacaaa accttggcag      4320
     ataatatcca tggacttaat gggaccattt cctaaaagta agaactgtaa cacaatgctt      4380
     ttagttataa cttgcttatt cagcaaattc atacttttgt tccctttaag aacggggaag      4440
     gctgataaaa tttgtgaaat cttagaaagt cagttcttat tgttcggaat accacaagca      4500
     ataatttgtg acaacggtaa acaatttgac tcgcacattt ttaagaatct tataaaacaa      4560
     tataatagtc aaatttggtt tactcctcac tatcaccctc aaagtaatcc cacggaacgg      4620
     gttaacagag taataggcac aatgatatcg tcttacatga cgtcaaaaaa acacaatgaa      4680
     tgggatgttc atctacagaa atttgctcat gccatacgaa catccattca tgagaccacc      4740
     cagtatacac cgtcatttct gttctttgga agggaaacat ccattccagc tacttctgac      4800
     accagcaccc atatagtgtc gaatgagaaa aataatgaaa atttcatcag tgacactcgg      4860
     gagtacttga cagacctaca gtctaggaac gccatttata aggcagtaga aaccaaactc      4920
     aagacatgcc atgccaaaag tctcaaatcc tataacgaaa aacgcagaat agcgaatttt      4980
     caaattggcg atgtggtttg gaaagaacaa agtatctctc taaagcagga accaaattta      5040
     tggctaaatt agcacccaaa ttcgagaaag ccatcatagt aaaaaagtta tcggccaatg      5100
     tttttcattt aaataattct tatggtaaac ctattggagt atggcattca aaagatttaa      5160
     agcccttgtg gcagggttat aataatattt cgagttaaac gaaataaaat attatattag      5220
     atatgaatat tttatttctt tgctaggttg ggggaa                                5256
//
ID   Gypsy-27_MSe-LTR repbase;    DNA;    INV; 751 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-751
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 953-953 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 751 BP; 211 A; 110 C; 162 G; 268 T; 0 other;
     tgttataata ttattatttt ataatgacgg gtaggttgac atagcaaagt ataagcatag        60
     aaaatcttag agaatgcacc ttaactaata aaaagttttg ttaaatgcct gtaatgagct       120
     attggctcgg tggtatttgc actggtctgt agatatctcg acacccgagt tcaaatccac       180
     tcaatcgagt agcaggtttt tattgttttt ttaaattaag tattttaact tcgagtgacg       240
     aaattaggaa tgaccttccg gacattgtcg ggaggacatt ggcgtgtgaa tgacgtgtaa       300
     cgtcccgcag tgtttaccgg tacatttaat tataccgaga tagcataata gtttagtgcg       360
     ttgcttgaca gttggaatat gttttgagtt taatataatt aatgtgttgt gcacagtggg       420
     ggtgagttta tatgtttttg ttaataaggc tggtgagctg aaatagttaa ctgaagagct       480
     aaaatatgtt ttcacttgtt ttagacttag gacatgcccc tttatgtgag gttcatcact       540
     aattacatcc ctgagacacc ctgctggtcg ggtcttggtt ttggcagagt tccgttgtcg       600
     aaaaataaaa actctcctgg cgtccaattt tagttatata gatttaaacc tagttcgtag       660
     tcatagttta atttgttatt agttagtgag taagttaata aatgtattac ttggccaggt       720
     tctttatttg ctttcatggc aacccgtaac a                                      751
//
ID   Gypsy-27_OrIn-I repbase;    DNA;    INV; 5137 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1568-1568 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           308..1480
FT                 /product="Gypsy-27_OrIn-I_1p"
FT                 /note="RING-like zinc finger at the N-terminus."
FT                 /translation="MATCSVCLEGIQGEDSAKCAKCARNFHFQCSRLLERA
FT                 TFIKMNQERRLAWECDGCNRITSLEKDMAKLQSAMEASSKKTNESVSTLRN
FT                 EMGIINQKIDKILSFMKTSPETSPKVLASPEPAKLPTPSQPQPHKIPRYIE
FT                 EKMAKVPVIKTDNVWTVLSFIDEISKLNDLSPDIFPQALKRVAADQPNLIL
FT                 KRLINESTDLSFNAISKLILDHFTTPSTRAFLVTRKVYRPQRDYETFGDYC
FT                 EDILRYSALLTSLSDSEKIDSILCNVNFHTSSRFQFGTRPKSIEELRSLIQ
FT                 AVAKLEIAASSTRNFLNKPRRFQKAGYKNDANHAETSPTKGPDDKTTQNKR
FT                 TEWRDKHSGWNKKFKNSNNTSKKESNMTITDSPQEGATQTNTPSDQKN"
FT   CDS           1459..4599
FT                 /product="Gypsy-27_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YTQRPKKLKSRVGVPKESVINQITISKLNNCLPIFLE
FT                 KNKFLALIDTGASICCISQQTFDKICAGTPSIASRTLHHPVPVIVGDSSTI
FT                 ICKKGVDLQLKIGNFKWKFHFLILEPLPIDLVLGFNFMRYSEMILDPAESL
FT                 IFFKFAPKFKFPLFPKTDDRFQNLNPICTQGNLLKSLKQKFPETLTCRLGR
FT                 TDVIQCSLRLKDHATLRPQRLVFPQGPEKSKIMREIVDKLLADGIVERVSV
FT                 DFASPAFLVPKKPTPGKPKDFRLVVDYRKLNENLEYSYFPIPTIESAFLHL
FT                 SKAKYFTVMDLNSAYNQIALTPESRKLTAFSTPFGCFMYNRVPFGISLAGN
FT                 VFSQLMESVFGDLNHDFIFFYLDDICIYSASWDDHIKHISIVLERLKKANL
FT                 TVNPDKIQLATEKIHFLGHTIQAGGISIDPDRIKAVLNIPRPTTPKQVASF
FT                 LGSVNFFGRFIPDLAAISRPLNALRKLNSDMIWTEECQKAWETLRERITSP
FT                 PVLKTPNFDDRFAVFTDGSSLGIAACLAQRENDAYRPIAYASRKLRGAEEN
FT                 YSAYELEALAVVFAFDKFQIYLEFSEFDLFTDHKALTSVISMQNKGGRHAR
FT                 IAARIMTYRYVSHHIKGTKNSIADYLSRNPVDAAVEPETACVLQRTPEVFQ
FT                 DLGEAQREDINLRSIIEQLEANIPVPNYSLLGDKLYYHFSATQKRVVVPEA
FT                 LRHMIFKYYHTELPGAHQGITRTLHKIRETFYFPKMREFIAIRVRRCLACQ
FT                 RAKPEQSKPKGDLSSFTPSEPNEILFVDLAGPLPCSNSYKYIFVAVDAFTG
FT                 FTFLFPIRNANTSTIITCLKEKIFNYFGYWTTVTTDNHSIFKAKQLRDFLF
FT                 QNGVRKSFQIPYYPNPSRAERCLRNLKPSLIAYFGEQQTKWSGNLSFFQLA
FT                 LNTAVNCSTGFTPAELFLGRRLNTPLNLEWDVPVQGNGRKPQEMWTEALDN
FT                 IGKAKEKYKRDYNKKHENIKLQIGEKVLIKSHILSDKAKKISAKLSYKFSE
FT                 PHIVTRIVSEVTYEVTSTKEPNKVVRVHISQVKKVPQDVGQ"
XX
SQ   Sequence 5137 BP; 1609 A; 1182 C; 943 G; 1403 T; 0 other;
     attggtagca gagcattttc cttttttttc tttccaccct ttgtaaataa tattgtaaaa        60
     aaaaaaaaaa actaataaga agtgtatttt ttaatttttg taaataattt tttcgttaat       120
     aataatcgtg gattttgtgt gtgtttctta tctggtcaag cctgtcccga cgaggacgtt       180
     ttgaccttga catacctttc tattttggga cgaattacct gttttctttt tttttctctc       240
     tttctctccc agtatttaaa tttaaaatac agtgtttaaa tttttttttt ttcttttccg       300
     tgttacaatg gccacatgta gcgtatgcct tgaaggtatc caaggagaag acagtgcgaa       360
     gtgcgccaag tgcgcacgaa atttccattt tcaatgctcc cgtttgctcg aaagggcaac       420
     atttataaaa atgaaccaag aaaggcggct cgcgtgggaa tgcgacggtt gcaatcgaat       480
     cacctccctc gaaaaagaca tggcaaaatt gcaaagcgcc atggaagcca gttctaaaaa       540
     aacaaatgaa agtgtttcaa cccttagaaa tgaaatgggg ataattaacc agaaaataga       600
     caaaattctt tcttttatga aaacatcccc tgagacgagc cctaaggttc tcgcatcccc       660
     cgaacccgca aaattgccaa caccttcaca acctcaacct cataaaattc cgcgttatat       720
     agaggaaaaa atggcaaaag tacctgtcat aaaaacagac aacgtctgga cggtccttag       780
     tttcatcgac gaaatctcca agctaaatga tttatccccc gatatcttcc ctcaagcgct       840
     caaacgggtc gcggcagatc aaccaaacct aatccttaag agattaatta atgaatctac       900
     ggatttgtcg tttaatgcta ttagtaaatt gattcttgac cacttcacga ctccgtcaac       960
     acgagctttc ctggttacaa ggaaggttta ccgcccccag cgggattatg aaacctttgg      1020
     ggattattgt gaagacatcc ttaggtattc ggccctcctc acctcccttt ctgactccga      1080
     aaaaattgac tccatccttt gcaatgtgaa ttttcacaca agctcgcgtt ttcaatttgg      1140
     gactagaccc aaatcgatcg aggagctacg ttccttaatc caagcagtgg caaaactcga      1200
     aatagccgcg agttccacga ggaatttttt aaataagcct cgtcgtttcc aaaaagcggg      1260
     gtataaaaat gatgctaatc atgccgaaac gtccccaacc aaaggtcccg acgacaaaac      1320
     tacccaaaat aaaagaacgg aatggagaga caagcattcc ggatggaata aaaaattcaa      1380
     aaattcgaat aatacttcca aaaaggagtc aaatatgacc atcacggact ccccacaaga      1440
     aggggcaacc caaactaata cacccagcga ccaaaaaaac taaaatcccg ggtcggtgtc      1500
     ccaaaggaga gcgttataaa ccaaatcacg atttctaaat taaacaattg cttaccaatt      1560
     ttcttagaaa aaaataaatt tctagcctta atcgataccg gagcctccat ttgttgcata      1620
     agtcagcaaa cctttgacaa gatttgtgct ggaaccccat caatcgctag caggaccctc      1680
     caccatccag tgccagtgat agtgggagat tctagcacga ttatttgtaa gaaaggtgtt      1740
     gatttgcaat taaaaatagg caattttaaa tggaaatttc attttcttat cctggagccc      1800
     ctccccatcg atctagtctt aggttttaat tttatgcgct actccgaaat gatactagac      1860
     ccggccgaat ccttaatatt ttttaaattt gcaccaaagt ttaaattccc acttttcccg      1920
     aaaacggatg atcgttttca aaatttaaac cccatttgca ctcagggaaa tttattaaaa      1980
     tctttaaaac aaaaattccc cgagaccctg acgtgccgtt taggccgaac ggacgtcatc      2040
     caatgctccc tacgccttaa ggaccatgcg accctcaggc cacaacgatt agtttttccc      2100
     cagggtccgg agaaaagcaa gatcatgcgt gagatcgtcg acaaactttt ggcggatgga      2160
     attgttgaaa gggtatcggt agacttcgcc tctccggcat ttctggtccc aaagaagccc      2220
     acccctggca aaccaaagga tttcagactt gtagtcgact acagaaaact aaacgaaaat      2280
     ttggaatata gctatttccc gattcccact atagaatcag cctttttgca tttaagcaaa      2340
     gctaaatatt tcacggtcat ggacctgaac tcggcttaca atcaaattgc tctaacaccc      2400
     gagtctcgga aattaaccgc cttttcaacc cctttcggat gcttcatgta taaccgagtc      2460
     cctttcggga tctccttagc gggaaatgtt ttctcgcaac taatggagtc tgtctttggc      2520
     gacttaaatc acgatttcat ttttttctac ttggacgaca tatgtattta tagtgcctca      2580
     tgggatgacc atataaagca catctctatt gtccttgaac gcttaaaaaa agccaactta      2640
     acggttaacc ccgacaaaat acaacttgcc actgaaaaaa tacattttct tggtcacacg      2700
     atccaggctg gaggcatttc gatcgatcca gaccggataa aagcggtgct gaacatccca      2760
     agaccaacaa ccccaaagca ggtcgcaagt ttcttaggga gcgtaaattt tttcggcagg      2820
     tttattcctg acctagcggc catttcacga cccctaaacg cccttagaaa actaaattcc      2880
     gacatgattt ggacagagga atgccaaaag gcatgggaaa ctttaaggga gcgaataacc      2940
     tcccctcccg tcctgaagac cccaaatttt gacgaccgtt tcgcggtttt taccgacggg      3000
     tcatctctcg gaattgcagc ctgtctggcg cagcgagaaa acgacgctta ccggcctata      3060
     gcatatgctt caaggaagct aagaggcgct gaagaaaatt acagtgctta cgagctggaa      3120
     gctctagcag tagtttttgc tttcgataaa ttccaaatat atctggaatt ctctgaattt      3180
     gacctgttta cagatcacaa agccctcact tccgtgattt cgatgcaaaa taaaggcggc      3240
     cgtcacgcgc gcatcgccgc ccgaatcatg acttatcgct acgtctccca tcatataaaa      3300
     gggacaaaaa actctatcgc ggactacctt tccagaaatc cggtggacgc tgctgtggaa      3360
     cccgaaacgg cttgcgttct gcagaggaca cctgaggttt tccaagattt aggcgaggcc      3420
     caaagagaag atattaatct tcggagcatc attgaacagc tcgaggccaa tattccggta      3480
     ccaaattatt ccttgctagg cgataagcta tattatcact tttctgccac gcaaaaacgc      3540
     gttgtagtcc ccgaagccct ccggcatatg atttttaaat attatcacac cgaacttcct      3600
     ggtgcacacc aggggatcac tagaaccctc cacaaaatta gagaaacttt ctatttccca      3660
     aagatgagag aatttatagc cattcgagtt cggcgatgcc tggcgtgcca acgggctaag      3720
     cccgagcagt caaaacctaa aggggatttg tcgagtttca cgccttccga acccaacgaa      3780
     atattattcg tggatttggc gggtcctctt ccctgtagta attcatacaa atatattttc      3840
     gtcgctgtag acgcctttac tggttttacc tttttgtttc cgatccgaaa tgcaaacact      3900
     tcaacgataa ttacatgctt aaaggaaaag attttcaatt atttcggata ttggacaacg      3960
     gtaacgacgg ataaccattc cattttcaaa gccaagcaat tgcgggattt tttgtttcag      4020
     aatggggtca ggaaaagttt tcagatcccc tactacccca atccaagtag agcggaacgt      4080
     tgcttgcgaa atttgaaacc atcccttatc gcatactttg gagagcaaca aaccaagtgg      4140
     tccggaaacc tatccttttt ccaattagcc ctaaatacgg cagttaattg ttcaaccggc      4200
     tttacgccag ctgaactttt cctcggtcgg cgtctaaata ctcctttaaa tttagagtgg      4260
     gacgttcccg tccagggaaa tggtcgaaaa cctcaagaaa tgtggactga ggctttagac      4320
     aatattggga aggcgaagga aaaatacaaa agggattaca ataaaaagca tgaaaatatc      4380
     aaactacaga ttggtgaaaa agttttaatt aaatcccata tcttgtctga caaagcaaaa      4440
     aaaatatcgg caaaattgtc atacaaattc tccgaaccac atatcgtcac aagaattgtc      4500
     tcagaggtca catatgaagt gacaagcacc aaagaaccaa ataaagtcgt gagagttcac      4560
     atctcacagg tcaaaaaagt tccacaggat gtaggacagt aaacaaccat ttcaaccatt      4620
     tctattttgt tttatttttt tttatttttt ttggaagaag aagtgtttag tttttgttta      4680
     ccgtttagtc actaaccaaa tctcacgttg gcaataaaag aaaggataaa attaagttgc      4740
     ctaattaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4800
     aaaaaaaaaa aaaaagagag agaagccttg ctcaacctca cttaatcctt tttaacttcc      4860
     tttagccagc atcaaatcat cgacagcgca acgtcttctc catcgctatt cgaccttctc      4920
     caacatccac tgtctaaatt attatttaaa gagatacata tatatataca ttttttattt      4980
     tttacttttc ttctcttgct tctttttttt tctcccaacc gtaatgccta tcaaaggcgt      5040
     aacacctccc gccgttgcca tacctcgacc cgttacctgc cgcccgttac atcccttacc      5100
     ttgggggggc cgtgctgccg ccttcgagag ggggtgg                               5137
//
ID   Gypsy-27_OrIn-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-321
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1534-1534 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 321 BP; 73 A; 64 C; 89 G; 95 T; 0 other;
     tgtcacggta ctccggacac gcctcgcccg gtgctgggtg ggacacgggg gcggaggccg        60
     gggaggtccc tggccggttt aaggggggga gccggagacc ggcaggttga ggaaggacgc       120
     caaatgagaa ggaggtaatt ttcttggtct ttattttatt gccaaaacaa ttgatctttt       180
     ctgtacaaga aattctcttt taataaaaaa taacagtctg aggaggtatc cggtgttttt       240
     tcatttaacc attttccttt catagatctt tgactattat tatcattatt ttttattggc       300
     ccggctcgcg gaagcgtgcc a                                                 321
//
ID   Gypsy-27_SI-I repbase;    DNA;    INV; 5799 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_SI_;
KW   Gypsy-27_SI-LTR; Gypsy-27_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5799
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 444-444 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2490-2969] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4063..5715
FT                 /product="Gypsy-27_SI-I_1p"
FT                 /translation="MNQVESTWKLVINLHIQGFEVRYHQFQEYLKDTEKRC
FT                 GVIVNNAGQTCKNILKIVERDHSKLTALLNQLQTIYKARNPRRGLVNAIGT
FT                 FGKALFGTMDAEDAKIIDEQLKLLHNDDKKLQHAVKHQLRVLNSTIAHIGD
FT                 LENVLTLNEQLLTNTTKRMEQQLAKFTLQEDMNEHLLILTTILNDLIRDTE
FT                 NILDYLTFAKDKIIITRLCPTEAIVAALREAATQLTKGLHFPFSIKVENWE
FT                 TIQNYLTVNAYHDEPYIHTVLRFPVVAYPTYKLIKAVALPTPMHDNVFAYV
FT                 KIDQPLLAIDKENHHYILLDKEEASKCVKEGDTYTCPTSFPTYYAGNTAPC
FT                 EVQMYTQAPGQETYCKKQLLFSNHTLWTALTEENAWLYSAPQPQEVSIKCE
FT                 NKAEEKTTIKRTGKLKMTGNCKLTTTYVTLTTRKTVGTNTIQTYLPEYNLT
FT                 LQTRSDSGKVSEAKLGQAALRPIIRSSNDLDKLKLSIEEIDNLLDKGDDSL
FT                 VTNKYVMYPLGTGTIMIIIVAIVIASSWFVRRRRETTNQRKKREEKRRHDD
FT                 VIMY"
XX
SQ   Sequence 5799 BP; 2071 A; 1359 C; 1390 G; 960 T; 19 other;
     aaagtggtgg cagcggtgac ccgtcgtaga agccagactg gtggtaacct gcaagagaac        60
     cagccgagga tcaacaagcg tcccaaagaa gagcggaccc gaaaaggtga cccggcggca       120
     agcagacgct acgtccggac agcacacgaa gaggcaccgg acgatccaca acacggcaag       180
     gagacaacac catgcgacga cttgcgatag ttatgtaagt caattgtaac acataattgt       240
     aagcgtaaaa ggcattgtaa aagcgcgtag tcaatgtcga gaagcgagcc gagtagccca       300
     cacaatcccg aacgaaatac ttcgtggtta catagtgaac cgggcgctcg agcacgtaga       360
     ccggacgcac tgagccccgt acgcgtaata gccgaagccg tgcaagatat tcgcaacagc       420
     gtacgccgaa atttagaacg ccattactcg agcgattccg cgtccgaaac agaattaccg       480
     ccgaacgtag tcgtcgaacg ggaatttcca tttaacgaac tagacccgag cataatacaa       540
     aacggacacg acggaagtcc aataccgccg acggacgacc aatcagtcga aagtatagac       600
     tcaaatatca gtattaccct acggagggaa ttctctctgt catcgtatga tagcagcgta       660
     ttcaacccgg aagagtttta cattgcggcg cgtaatmcga gaagaatggc gagccaacca       720
     gaactcacac cgcgtccgga cgcgggtgac gwaagagagg tatcaaacgc cgagatagac       780
     gcagagatag ttcggctgag aaccgcgagc gcacgaagac gcaccagaca agagcaacct       840
     gaaccgcagg aggagcaacg aaacatacta gatgtgttag acgaagtgat caacggaatg       900
     cgagctttac aagatcgaat gagtagagta gaaattgcac actacggaga tcaaaacgmg       960
     tcggacttat gcgaaaatcc agaacctccg gaaccgccag aaatagcata cggtcgcacg      1020
     acagcggaca ttagaaattc acgtggaccc gtatatacgt atatgaagct gaaagaggca      1080
     cgcgacatga tccccacaat ggacggaacg gttcgaaacg atgtaataga atttttgaac      1140
     gcaagctcat atgcggtaaa ggaaataaat ccgcaagacg aagactcgct gttgagagca      1200
     atcttatgca caaagctgaa aggcaaagcc ctacatgatk tccaaacgcg cgatatacgc      1260
     acatacgccc aatcaaaaca ggaaatagag acgtgctatt tagcgaaacg cggcaccgcg      1320
     catatcacaa acgaattcaa tcaagctcgc caaaagcccg gcgaaagcgc acaggagtac      1380
     ggtcttcgcg tagatamgct cgccatkaag ctctatcagt ccatgatcga ggggaaaaga      1440
     cagacgcccg agcagagaaa ggggatcctg gatacgatcc aaggattagc actagaaawt      1500
     tttcagctag gactgcggga agagataaaa ttaatagtgc gmtcccgaaa ctacgcgwcg      1560
     ttaatggacg cgatacaagg cgcgtccaat aaagaaaaac tgaaaggggt aaacgtaaag      1620
     ccagataaac ctactgaccg ctacaaagga aacagagaag gacagcacgm ktacaagaaa      1680
     ccaaagtgtt tcaaatgcgg taagataggc catcacgggc gcgaatgcag aacaggccaa      1740
     aaccgatacc acttgccccg gccggaaaga acggctagcg ctaacacagt ggawaaatat      1800
     tgcacgcact gtaaaaggac ggggcataag cgcgaagaat gctggctatt acacggtaag      1860
     ccacgaaaag awaaaccgag gctaccaaga aaagaaagaa gaataaacac tgccgcggta      1920
     gatcgaamag gtaagtcgcg ccgcaataaa gaaagcgacg agtcatcata cagtagcagt      1980
     gacagcgaag aagaaagagg aaagaagagg gcaagagagc gcaccgtgcg cgagcatcaa      2040
     gttacacaag tgacatgcaa gcaacgtaat cataacggcc tagacctaat aacattacca      2100
     gtacgagagg ccaagaaaga aaaattgagc ttactactag atacaggtgc aactatcacc      2160
     ttaataaagk taggatccwt gaagggagag accaaaatgc gtgaggaacg catgacactc      2220
     accggtgtga caggacataa aatccacacg attggaaaga tacgagctac aataaatatt      2280
     ggaaaccaaa aaatacggca cacgatgsac gttgtaaaag atgactttcc catggactat      2340
     gagggcattc taggaataga tttcctaaac aaacaaggcg caaaatgcga ccacggtaaa      2400
     agacgtggag gaatacgtga agcaatttct agtactgcca gaaaaataaa ctaagcaaga      2460
     aaacaaaaat gcctatggtg gtcacagaca cgcccgagaa gccttttgaa aaatgcgcac      2520
     tggacatagt ggggccatta acaataacga cccgcggaaa taagtacatt ctaaccttcc      2580
     aggatagtct aaccaaattc agcaaagcca ttccgttaga aaaccaggag gcagccacgg      2640
     tggcaaaggc cttcgtaacg agagtcgtca ccgaacatgg aataccggag aagatcctca      2700
     cggatcaggg gacgaatttt acgagtgcag tattcaaaac tacttgcaag ctcttaaaga      2760
     tagagaaaat acagacgacc gcgtatcatc ccgagagtaa cggcgcgcta gaaaggtcgc      2820
     ataggacgct cgccgagtac ctgcgacatt atataaatga gacacagaca gattgggacg      2880
     agtggctccc gtacgcgatg ttcgcttata acacgacgcc gcatacagcc acagggttta      2940
     cacccttcga gctgatgtac gggcatcgcg ccacaatacc gacggcactg acaaggccac      3000
     cgaaagaaac atactcttac gaagattacg cacaggaact tcgagagaga atacgcgcaa      3060
     ctaaccagat cgcaaaggaa aacgtacaga aggctaaaac gcaagcgaaa atacagtacg      3120
     acaagaccgc gaataaaaaa gagttcaggg taggagatca ggtgttgctc cacgacgaaa      3180
     cggcgcgccg aggaagatca aaaaagctgg actcacaatg gatagggccg tacgtagtaa      3240
     tggaaaatca cgagggaatc aattacacga ttaagcgagg cagacgaacc attcgcgttc      3300
     acgcaaatag attaaaacat ttcattgaaa actaatgaat actctaaatc aagcgtgccg      3360
     aaaatcatta gaataagcaa taaatttagt agaagataag cgctgtagaa ataaagcaca      3420
     ccagaaggag ccatgtcctt actcacctca agatcgtcga gggagtgtcc tagaccgcac      3480
     cactckttgg ccaktggtgg tatttacctc aaccgttaga aggcgaggaa cacggacctc      3540
     gacccccggg ccccaaagca aaggcgacgg acgatcggaa gggggtaccg tgtcaggcac      3600
     cacaacaacc cgaggaagct ctcggatgga gggacgcacc acttggacag gaggctcgtc      3660
     cacttcatcc tcaggggagt aagggcgaag atgcaaccct acccccgtgg gcagacgacg      3720
     aaattccctc aaccactgcg aacgaagaca cgcccagcaa tgcgtagggg aaaggaaaaa      3780
     atcgtggcac ccgtcgcagt acataataca aataaataag aatatgaaca aaacggcagc      3840
     gaaccacgcg actgccgggc ggcaactaac gttaagccgc agaagaagaa cacaaaaaaa      3900
     aatttgcagt ataagaattc gcagaacgat aacgcagacc ttcacctttg caggttaatt      3960
     accgcaagag catgcctggc ggagttcgcg aattcacaat cggacataag ttggaagacg      4020
     ttcagccatg agcccggact gtatttcgaa gaaataggcc gcatgaacca ggtagaatcg      4080
     acttggaaac tagtgataaa tctgcatatc cagggcttcg aagtaaggta ccaccaattc      4140
     caagaatatt taaaggatac cgagaaaagg tgcggagtga tagtcaacaa tgcagggcag      4200
     acctgtaaaa acatcctgaa gatagtggag agagaccact caaaattaac agcgctgctg      4260
     aatcagctgc aaaccatata caaggcacga aacccgagac gtggcttggt caacgcgatc      4320
     ggaacattcg gcaaggcgct ctttggcacc atggatgccg aagatgctaa aataatagac      4380
     gagcaactga aactgctgca caatgacgac aaaaaattgc agcatgcagt gaaacaccaa      4440
     ctcagggtat tgaactcgac gattgcacac atcggcgatc tcgaaaatgt gctgacgctt      4500
     aacgagcaac tattgacaaa taccacgaag aggatggaac agcaattagc aaaattcaca      4560
     ttgcaagaag acatgaacga acatttgttg atcttgacga ccatattaaa tgatctgatc      4620
     agggacaccg aaaatatact cgactacttg accttcgcca aggacaaaat aataataaca      4680
     agattgtgcc ccacggaagc gatagtagcc gcgctcaggg aggcagcgac acagctaaca      4740
     aaagggcttc acttcccatt cagcataaag gtcgaaaact gggaaacaat ccagaactac      4800
     cttacggtaa acgcgtacca cgacgaacca tatatacaca cggtactgcg ttttccagta      4860
     gtagcgtacc caacatacaa actaataaaa gcagtggcgc taccgacgcc aatgcatgac      4920
     aacgtgttcg catacgtaaa aatcgaccaa ccactgctgg caatagataa agaaaaccat      4980
     cactacatac tactagacaa ggaggaagcc agcaagtgcg tgaaggaagg cgatacttac      5040
     acatgcccta caagcttccc gacttactac gcgggaaaca cagcaccatg cgaagtgcaa      5100
     atgtacacgc aagcgccggg gcaggaaaca tactgcaaga aacagctcct attctcgaat      5160
     cacacgctct ggaccgcatt aaccgaagaa aacgcgtggc tatattccgc accgcaacct      5220
     caggaagtta gcattaagtg cgaaaataag gcggaggaaa aaaccacaat caaacgaaca      5280
     ggtaaactaa aaatgacagg aaactgcaaa ctgacaacca cgtacgtaac actaacgacc      5340
     cgaaagaccg taggaacaaa cacaatacag acgtacctac ccgaatacaa tctgacatta      5400
     cagaccagaa gcgatagcgg aaaagttagc gaagctaaac taggtcaggc agccttacga      5460
     ccgataatca gaagctccaa cgacctagat aaacttaaat taagtataga ggaaatcgac      5520
     aacctgttgg acaaaggcga cgatagttta gtaactaaca aatatgttat gtacccccta      5580
     ggcaccggaa caataatgat aataatagta gctatagtaa tagcgagctc atggtttgta      5640
     agacgccgac gcgagacaac aaaccaacgg aaaaagcgag aagaaaaacg gcgtcacgac      5700
     gacgtaataa tgtactaggc aattaagcaa taaaattaag tttaagcaaa aaaaaaacgg      5760
     gaacgtaccc cacgttccct tccactcaag ggggaggaa                             5799
//
ID   Gypsy-27_SI-LTR repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_SI_;
KW   Gypsy-27_SI-I; Gypsy-27_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-405
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 445-445 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 405 BP; 126 A; 113 C; 87 G; 79 T; 0 other;
     tgtcacgagt ggcgaaagcc accgctgacg aaacagttaa tcaccaaaca caacttgttt        60
     atattacgcc accggtatcg gtaacgctaa cctcacgaca cagtaaccga taccgggaac       120
     gctgaacagg cgaccttcgc gagtagacaa cagatctgcc gagtcggcaa ggccagatcg       180
     gccggctctc caataaatag agaatcaacg ccgtaatagg cggactcagg ttaaagcacg       240
     cgacagtacc gcgtcgcgtc cggcaccatc gtatctatct cgaataactg acagtgtaac       300
     catttataat aaaacacttt attattaacc gtacacgagt gtttgattca accgtctcca       360
     atcgacgggc tcctaccaac gactccgaga aaggaacgca taaca                       405
//
ID   Gypsy-27_SiCu-I repbase;    DNA;    INV; 4249 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4249
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5050-5050 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..4149
FT                 /product="Gypsy-27_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGASVKVEVSSDSDSDSTKSSTATTAANTSKNQPPP
FT                 PNPKPKKKRKKMPQQIVGSLTAFDPKRDDLEMWWATFENFLVANDLSVSSS
FT                 EAKCVGILLSTIGIDTYTVLNTLLSPDAPSTKKLTELKSALVGHYKPAPKA
FT                 IAERFRFTGRKQNTGETVHEFEAALRQLAIRCKFGAELENRVRDQFIFGLQ
FT                 SEAAQRQLFTKDDTIALKDVVALASAQEAAEASTALVRGKAQQQLSNDQVH
FT                 KVYNSSSKHTNNNKQRGNKSWGNKFKGNKHNSQNSQQQKTAKQSSSSSGGD
FT                 HNACQGCGSTDHSRSKCKFLQAKCHTCNKIGHISTVCRSQKGTSNHHLSLD
FT                 SVSDMKMVRSSNKRLITLEVTINGKSHSMELDTGCETSVLSEEFYKTQLGS
FT                 QPPLCPSHHVFRTYTKETFTPIGDLPCIIQHEGQQFSTRIPVSRGSSLFGK
FT                 DLLSVFQINWKNVESQCHQVVGDATELDSLLKIYQDIFQPPTSSDRIKGYT
FT                 ARVILKDDATPRFLKARPIPYALRDKVDKELKMMEATGVITKVETSEWASP
FT                 LVVVPKADGRVRITGDFKNTVNSQLCVTQYPLAIPDDIFATLAGCKTFSKL
FT                 DGSNAYHQLQLDESSKSFLVINTHRGLFRYNVLPQGIASSPAIFQAFMDEL
FT                 LKDVPHTGGFVDDAISGGTDKSSHLQQLRTIFERCRRHNYKLSPLKCQFVQ
FT                 PRIEFLGHVITEEGIQTSSRKLQAIQQIPQPQNVTDVKSFLGLVNFYGKFV
FT                 DKLSSTCEPLYHLTKKDVEFVWSTNCQQAFEQVKKMLSTAPTLTYFDPTKP
FT                 IGVSCDASPVGLGVILFQKEVNGFERPIAFASQLLSTTERNYSQIEKEGLA
FT                 IIYGVKKFYKYLCGRRFTLVTDHKPLLTIFGPKSQLPPLVATRLHHWSLFL
FT                 SQFSYDVIYRKSEDHGNADALSRLPPPEAPPQATPYHESCVNYVATNQLEA
FT                 LPVTASQIRKATSKDPILSKVLQLVLYGWPPKLREEDFNVKPFFTRRLELT
FT                 INQGVLMWGIRVIIPSSLQQRIILQLHEAHLGIVRMKALARQHVYWPGIDQ
FT                 AIEALCKSCVTCQQSAASPPNSPLHPWIFPEKPWQRLHMDLAGPYLNNMWL
FT                 IVTDAHTKWPEVFIMNNTTTTSAVLQKLVELIARFGVPEQIVTDNGRQFIS
FT                 SDFEGFCKENAIKHILSSPYHPRTNGEAERFVRTFKEAMKCSDLPPQLRLQ
FT                 RFLLAYRTTPHSTTGVAPAELLQNRHLRTLLDLIHPNVSTTTRKSQAAQEK
FT                 SFNVNVKSREFHLQDAVWVKTYLKGEEKWTLGTIIGIIGPTTFHIKIGDRI
FT                 LKRHSDQIRKASTPASHVQPSIDPEAEPPSLSSTLAAAST"
XX
SQ   Sequence 4249 BP; 1191 A; 1208 C; 848 G; 1000 T; 2 other;
     ttggcgacga gtgatgtgtt agtgctacag aaagttagtc tcaagttgcc cctacgctgc        60
     tctaaacaga acaaaaaact ttaacttttc tacatgagtg gggccagtgt caaagtagaa       120
     gtttcgtctg actctgattc agattctacc aaatcctcca ctgccaccac cgctgccaac       180
     acctccaaaa accagccacc acctcccaac cctaaaccta aaaagaagcg aaagaagatg       240
     ccgcagcaaa ttgttggatc tttaacggct ttcgatccca aacgggatga tctggaaatg       300
     tggtgggcta cctttgaaaa tttcctggta gccaacgacc tcagtgtttc atcaagcgaa       360
     gcgaaatgtg tcggcatcct cctctccacc atcggcattg acacgtacac agtgctcaac       420
     acgctgctct ctcccgacgc cccatcaaca aaaaagctta cagagttgaa gtcagctctc       480
     gtggggcatt ataagcctgc tccgaaagcc attgctgagc gattccggtt taccggaaga       540
     aagcagaaca caggagaaac agttcatgag tttgaagcag cgcttcgaca attagccatt       600
     cgctgcaagt ttggagctga gttggaaaat cgagttcgtg accaattcat ctttggccta       660
     caaagtgaag ccgctcaacg ccagctcttc actaaagatg acaccatcgc cctcaaggat       720
     gtggttgcmc tcgcctcagc ccaggaagca gcagaagcmt ctactgctct cgttcggggc       780
     aaagcgcaac agcagctctc taatgaccaa gtacacaagg tgtacaactc atcttccaaa       840
     cacaccaaca acaacaagca gcgaggtaac aaaagttggg gaaacaagtt taaaggaaac       900
     aaacataatt cccaaaactc acaacaacaa aaaacagcaa agcagtcctc atcatcttca       960
     ggtggagatc acaacgcttg tcaaggttgt ggatcgactg accactcccg tagtaagtgc      1020
     aaatttttgc aagccaagtg ccatacgtgc aacaagattg gccacatctc tactgtctgc      1080
     aggtctcaaa agggaacctc caaccatcac ctcagcctgg actcagtttc ggacatgaaa      1140
     atggtccgct ccagcaataa acgcctaatt actttggagg tgaccataaa tggcaagtcc      1200
     cattccatgg aactcgacac cggttgtgag acaagtgtac tctccgagga gttttacaaa      1260
     actcaactgg gttcacaacc acctctctgt ccctcacacc atgtctttcg tacctacacg      1320
     aaagaaacct tcacgccaat tggagattta ccctgcatca ttcaacatga aggacaacag      1380
     ttttccaccc ggattcccgt cagtcgcggc tcatcacttt tcggcaaaga tttgctaagt      1440
     gttttccaaa tcaattggaa aaatgtcgag tcccagtgtc accaagtggt tggcgacgcc      1500
     accgaacttg actctctatt gaaaatatac caggacattt tccaaccacc cacctcttct      1560
     gatcgtatca aggggtacac agctcgtgtc atactcaaag acgacgccac cccaagattc      1620
     ctcaaagcac gccccatccc gtacgctctt cgcgacaaag ttgataagga attgaaaatg      1680
     atggaggcaa ctggagtcat caccaaagtg gagacaagtg aatgggcttc tccacttgtc      1740
     gtcgtcccaa aggctgatgg cagggtacgc ataactggcg actttaaaaa taccgttaat      1800
     agccagttat gtgtgactca gtacccccta gccatccctg atgacatttt cgccacctta      1860
     gctggatgca aaaccttcag caaattggac ggctccaatg cctaccacca gctccagctc      1920
     gacgaatcat ctaaatcgtt cctggtaatc aacactcacc gggggctctt ccgctacaac      1980
     gtcctccctc aaggcatcgc atcatcccca gccatcttcc aagcatttat ggatgagctg      2040
     ctgaaggacg tccctcatac tggtggtttt gttgatgacg ccatctcagg tggtacagac      2100
     aagagtagcc acctacaaca attacgcacc atatttgaac gctgtcgccg tcacaactac      2160
     aaattatccc ctttaaagtg ccaatttgtt caacccagaa tcgagttcct gggccatgtc      2220
     atcacagaag agggaatcca aacaagcagc agaaaactgc aggcaattca gcaaattcct      2280
     caaccccaga atgtcactga tgtcaagtcg tttctgggcc tggtcaactt ttatgggaaa      2340
     ttcgttgaca aactctcctc cacctgcgag ccgctgtacc accttaccaa gaaggatgtg      2400
     gagtttgtgt ggagcaccaa ctgccagcag gcattcgaac aagtgaagaa aatgttgagc      2460
     accgccccca cactcacata ctttgaccct accaaaccca ttggggtatc gtgcgacgca      2520
     tcccctgttg gtctcggagt aatcctgttc caaaaagaag taaatggctt tgaacgcccc      2580
     atcgcatttg cctctcagct gctttccacc acggagagaa attactccca aattgagaag      2640
     gaaggattgg ccattatcta cggagtgaag aagttctata aatacctctg tggccgccgt      2700
     ttcaccttag taacggacca caaaccactc ctcaccattt tcgggccaaa gtcccaactt      2760
     ccccctctcg tggctacgcg tcttcatcat tggagtcttt tcctctctca gttttcatat      2820
     gacgttatct accgaaaatc tgaagatcat ggcaacgccg acgctttatc tcgcctgcct      2880
     cctccagaag caccaccaca agcaactcca tatcacgagt cttgcgtaaa ttatgtggct      2940
     acaaatcagc tagaagcgct acctgtaacc gcatctcaaa tccggaaagc cacctccaag      3000
     gacccaatcc tgtccaaagt actccaactt gtactttatg gatggccacc aaagctccgt      3060
     gaagaggatt tcaacgtgaa accctttttc actcgacgat tggagctgac catcaaccaa      3120
     ggtgtgctta tgtggggaat ccgtgtcatt atcccctcat cactgcagca gcgcatcatc      3180
     ctccaactcc acgaagctca tttgggcatt gttcggatga aggccctggc tcgtcaacac      3240
     gtctattggc cagggattga ccaagcaatc gaagccctct gcaagtcatg tgtcacttgc      3300
     caacaatcag cagccagccc tccaaattca ccacttcacc cctggatatt tccagagaag      3360
     ccgtggcagc gcctgcatat ggatttggca ggcccgtacc tcaacaacat gtggctgatt      3420
     gtgaccgacg cccacaccaa gtggccagaa gtgttcataa tgaacaacac caccaccacg      3480
     tcagctgtac tccaaaagct cgttgagctc atcgcacgtt ttggtgttcc tgagcagatt      3540
     gtgactgaca atggccgtca gtttatttcc tccgattttg aaggattttg taaggaaaat      3600
     gctatcaagc acatcctttc atcaccttac catcccagaa ccaacggcga agcagaacgt      3660
     ttcgtgcgca cttttaagga agcaatgaag tgctccgatc tgccacccca actccgtctt      3720
     cagcgtttcc tgctcgccta tcgaacgaca cctcactcaa ctactggtgt tgctccagcc      3780
     gaactcctcc aaaatcgcca tctccgtact ctcttggacc ttatccaccc aaacgtctcc      3840
     accacaactc gtaaaagcca agccgctcaa gaaaaatcat tcaacgtcaa cgtgaaatcc      3900
     cgtgaattcc acctccaaga cgctgtttgg gtaaaaactt acctgaaagg ggaggaaaaa      3960
     tggacattgg gtaccatcat cggcatcatt ggacctacga cttttcacat caaaattgga      4020
     gaccgaatct tgaagcgcca ttcagaccaa atccgaaagg cgtccacccc ggcatcacac      4080
     gtgcaacctt caattgaccc tgaagcagaa ccgccgtctc tttcctcaac tctagcagca      4140
     gcttctactt gagccgttca attctttatt ggattcatca tcactttcta aatattaatt      4200
     gtcacttaga ttttttcatg tatgatgtct tcaagtaggg atgaggaaa                  4249
//
ID   Gypsy-27_SiCu-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5104-5104 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 299 BP; 91 A; 69 C; 36 G; 103 T; 0 other;
     tgtagaatat ttaatcttat aatattcatt tatgttcaat tatgcaaatg ttaaattgga        60
     gactcgaatc tcctcaagcc tacgtgacca acaagtcacc caactttagc cttgagagtc       120
     aattaagatt ctctgctctt cgttactcta gctgttccag caattcttgt ttcattctaa       180
     ctttagctct cattgaataa atacaattca actgaactac cacgcatctc atattattga       240
     ctccatgctc atgctcaact ttggcatatc gcatatctaa agagccataa tatcctaca        299
//
ID   Gypsy-27_SiOr-I repbase;    DNA;    INV; 4730 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4730
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 362-362 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           96..3374
FT                 /product="Gypsy-27_SiOr-I_1p"
FT                 /translation="MEDQDENQSHQFSADDFERFVQNRAEENPNSNANINQ
FT                 FMNTITTLLQQNTQMLQMLQKQQQQPLHAPNQESPVRNYNVMPDLSKTIEI
FT                 FSAEEEPSKAKLWLQQLETAATLHNWPDAFIFQTAKSNLIGAARHWYSGRS
FT                 SEVVDWSSFRMAFIKTFVFTKNKTELWKRMQERVQSVNENVSVYFHSKASL
FT                 CKELSLSFEEEKEQIAIGLWSRELSNFVMSKFHIDEDALYQDIIAYERIVT
FT                 ARKNRLPERKNEIKKPQKTIEASLKKFTSLDQVNNKTIKCYNCNLLGHLAS
FT                 QCKKMPRVRGSCFNCGSMEHKIRDCPKIKGERASTSKKEVEEKEALMVENK
FT                 FPDRFTLPLCLVKDSKQLFIEGTLDSGSVISIITNSIIRPFNFEISEAPSV
FT                 DFEGVNKSKLDVIGSIMFKVYVEGIDVQVLFYIVPDDAIPVKCLLGRNFMT
FT                 NKNISLIFESGKVKIKSVLNDNLLENQENNEILQIDYIDQNEVDLNINSEI
FT                 DAKNRQKLVDLFVQDYIQPERPEKIESKIKMKIVVNSNHTPFYFKPRRLSF
FT                 YEKNIVQDLINDMLENNVIQKSTSEYSSPIVLVKKKTNDYRLCPDFRALNK
FT                 ITVRDNFPIPLIEDQIIQLQGQKYFTTLDLKSAFYHVDIEHDSIKYTSFVT
FT                 PVAQYEFLKMPFGLKNSPSVFMRYIHEIFKELIDLNKIFIYFDDILIPTTT
FT                 IPENISILKHVFKLLVENRLTLRIDKCTFLYTEIKYLGYIINEKEIRPNDE
FT                 HLLAIKNYPVPKNVKQVQSFIGLTSYFRKFVPNFSTIAGPLYNLTKKNSKF
FT                 NFGSEQFTSFNNLKEILMSKPVLALYSPKAETQLHCDASSHGYSGILMQKQ
FT                 KDLKFHPVFYYSQRTTESESKQHSFILELAAIINSIKRFHVYILGIKFKIY
FT                 TDCNSITLALKKKDINPKIMRWSLFLQNYDYTLEHRSGSNMQHVDSLSRCY
FT                 QNVLVLEETPFETNLSIRQYQDSKINKIREELEKTESKDFEINNNLVYKKE
FT                 NRRLLFYVPNTMELNVIRSCHDDLGHVGIDKCINAIKELYWFPNMRTKVDE
FT                 YIKNCLKCITYSPVSGKKEGFYIIYLREINHSLHYI"
FT   CDS           3266..4162
FT                 /product="Gypsy-27_SiOr-I_2p"
FT                 /translation="IYKKLFKMYYLFSCKWKKRGFLHNIPKGNKPFLTLHL
FT                 DHCGPLAKTSEKKNRFIFAIIDGFTKFVKIYACKTTNSTEVIKYLRKYFAD
FT                 YSKPLRIITDRGSAFTSNNFSEFLQNYNVKHVLIATGVPRANGQVERLNKF
FT                 IIPMIAKLTETPEKWDDILNDVEFAVNNSVHSTTGETPAKLLFGVPQEGLM
FT                 NDDLKQFLLTHKEEETDLDDLRDKANRNIEKSQSYNKTYYDKKHKEGKTYS
FT                 KGDYVMIPNVDVNPGINKKLLPKYKGPYVIKKCLPNDRYLITDIEGFQVTQ
FT                 RPFEGIF"
XX
SQ   Sequence 4730 BP; 1817 A; 628 C; 757 G; 1528 T; 0 other;
     acttcaggtg tggggttaaa tctgcgtagt ccccaagaag agaagaagag tgataagtta        60
     taacaatagt ttgaagatta ccggcaataa ataaaatgga agatcaagac gaaaaccaga       120
     gtcaccaatt ttctgctgat gattttgaaa gatttgtgca aaatagagct gaagaaaatc       180
     caaacagtaa tgctaatatt aatcaattta tgaatacgat aacaacctta ttgcaacaaa       240
     atactcagat gttgcaaatg ctacaaaaac aacagcagca gccattacat gcgccaaatc       300
     aagaatctcc agttcgaaat tataacgtaa tgccagatct ctcgaaaact atagaaatat       360
     tcagtgctga agaagagcca agtaaagcta agttatggtt acagcagttg gaaactgccg       420
     caacacttca caattggcca gatgcgttta ttttccaaac agccaaaagt aatctgattg       480
     gtgctgcacg ccattggtat tcagggcgaa gcagtgaagt tgtagattgg tcatccttcc       540
     gcatggcttt tattaaaaca tttgtattta ccaagaataa aaccgaatta tggaaaagaa       600
     tgcaagagag ggtacagtct gtcaatgaaa atgtaagcgt atattttcat tccaaagcat       660
     cattatgcaa agagttaagt ttatcattcg aagaagagaa agagcagata gctattggat       720
     tatggtccag agaattaagt aattttgtca tgtccaaatt ccatatagat gaagatgcat       780
     tataccagga cattatagca tacgagagaa ttgttactgc gaggaaaaat agattgcctg       840
     aaagaaaaaa tgaaattaaa aaaccacaga agacaattga agcatctctg aagaaattta       900
     ccagtttaga tcaagttaat aataaaacca ttaagtgtta caattgcaat ttgctaggac       960
     atttggcgtc gcaatgcaaa aagatgccta gagtgagggg ttcgtgtttc aattgtggct      1020
     caatggaaca taaaataaga gactgtccaa agattaaagg agaaagagcc tctacatcca      1080
     agaaagaagt tgaagagaaa gaagcattga tggtcgagaa caaattccct gatagattca      1140
     ccttgccttt gtgtcttgta aaagacagta aacaattatt tatcgaaggt actcttgatt      1200
     caggtagtgt aatttctatt attactaata gcataatcag accatttaat tttgaaatct      1260
     cagaagcccc atctgtagat tttgagggtg ttaataaatc taaattagat gttataggtt      1320
     caataatgtt taaagtatat gttgaaggca tagatgtcca agttttattt tatatagtac      1380
     cagatgatgc tatacctgtt aaatgtctat taggtagaaa ttttatgaca aataaaaata      1440
     tttctttaat ttttgagtct ggaaaagtca aaataaaatc agtattaaat gataatttat      1500
     tggaaaatca ggaaaataat gaaatcttac aaattgatta cattgatcaa aatgaggttg      1560
     atttaaatat aaattctgaa attgatgcaa aaaatcgtca aaaattagtt gatctttttg      1620
     ttcaagatta tatacaacct gagcgacctg aaaaaataga atctaaaatt aaaatgaaaa      1680
     tagtagttaa ttcaaatcat actccgtttt attttaaacc tagacgttta tctttttatg      1740
     aaaaaaatat agtgcaagat ttgattaacg acatgttaga aaacaatgta atacaaaaaa      1800
     gtacttcgga gtacagctct ccaatagttc tagttaaaaa gaaaactaat gattatcgat      1860
     tgtgtcctga ttttagagct ttaaataaaa ttactgtaag agataacttt cctattcccc      1920
     tgattgaaga tcaaattatt caattacaag gtcaaaaata tttcacaacc ctggacctta      1980
     aaagtgcttt ttatcacgtt gatattgaac acgattcgat aaaatatact tcgtttgtaa      2040
     ccccagtagc tcaatacgaa tttttaaaga tgccatttgg tcttaaaaat tctccttctg      2100
     tatttatgag gtacattcac gaaatattta aagaacttat tgatctaaat aaaattttta      2160
     tttattttga tgatatttta ataccaacta caactatacc agaaaatatc tcaattttaa      2220
     agcatgtttt taaactatta gtggaaaatc gcttgacttt gagaatagat aaatgtactt      2280
     ttttatatac tgagataaaa tatttaggat atattattaa tgaaaaagaa attcgtccga      2340
     atgatgagca tttattagca attaaaaatt acccagtgcc aaaaaatgta aaacaggttc      2400
     aaagtttcat tggtttgacc tcttactttc gaaaatttgt tccaaatttc tcaaccattg      2460
     ctggcccatt atataattta actaaaaaaa acagtaaatt caattttgga tctgagcaat      2520
     ttactagttt taataattta aaagaaatat taatgtctaa accagtttta gcattatact      2580
     cacctaaagc agaaactcag cttcattgtg atgctagttc gcatggttat tccggtattt      2640
     taatgcaaaa acaaaaagat ttaaagttcc atccagtatt ttattatagc caacgtacca      2700
     cagagtcaga gtctaagcaa catagtttta ttttagaatt agcagccata ataaatagca      2760
     ttaaaagatt tcatgtctat atactaggca ttaaatttaa aatttataca gattgtaata      2820
     gtatcacttt agcacttaag aagaaagaca ttaacccgaa aataatgaga tggagtttat      2880
     ttttacaaaa ttatgactat actttagaac atagaagtgg aagtaatatg caacatgttg      2940
     attctttaag tagatgctat caaaatgttt tagtactaga agagacacct tttgaaacaa      3000
     atcttagcat tagacaatat caagattcaa aaattaacaa aattagagag gaattagaga      3060
     aaactgaaag taaagatttt gaaatcaata acaatcttgt ttataaaaaa gaaaatagac      3120
     gtttactatt ttatgtacct aacactatgg aattaaatgt aattagaagt tgtcacgatg      3180
     atttaggaca tgtaggtatt gataaatgta ttaatgctat aaaagaactc tattggtttc      3240
     caaacatgag aactaaagtt gatgaatata taaaaaactg tttaaaatgt attacttatt      3300
     ctcctgtaag tggaaaaaaa gagggttttt acataatata cctaagggaa ataaaccatt      3360
     ccttacatta catttagatc attgcgggcc tttagcaaaa accagcgaaa agaaaaatcg      3420
     atttattttt gctataattg atgggtttac aaaatttgta aaaatatacg catgtaaaac      3480
     taccaattca actgaggtaa taaaatactt aaggaaatat tttgctgatt atagtaaacc      3540
     acttagaata atcacagaca gaggttctgc cttcacctct aacaattttt cagaatttct      3600
     tcaaaattat aatgtaaaac atgtattaat tgcgactggt gttccacgtg ctaatggtca      3660
     ggtagaaaga ttaaataaat ttattattcc tatgattgcc aaattaacag aaactccaga      3720
     gaaatgggat gatatcttaa atgacgttga atttgctgta aataatagtg ttcatagtac      3780
     cactggagaa acccctgcta agctattatt cggagttcca caggaagggt taatgaatga      3840
     cgatttaaaa caatttcttt taacacataa ggaagaagaa acagaccttg atgatctaag      3900
     agataaggca aataggaata ttgaaaaaag ccaatcatat aataaaacct attacgacaa      3960
     aaagcataaa gaaggtaaaa cttatagtaa aggtgattat gtgatgatac ctaatgtaga      4020
     tgtgaatcca ggtatcaata aaaagttatt accaaagtat aaaggtcctt atgtaataaa      4080
     aaaatgtctg ccaaatgaca gatatttaat aactgatatt gaaggattcc aggtaactca      4140
     aagacctttt gaaggtattt tttgattcaa atagtttgaa attatggtta aaattatctg      4200
     acactattga caaagccatt gaccaaaatc ttgaccaatg ttaatatttt gaatctgccc      4260
     aaattgattt tacttaactt attttcctga aagagtcata taatattgga ttgacttatt      4320
     ttattttgac ttatgaaaaa taatttaaaa tttaatcaca tgagataatt tatgaaacat      4380
     tatgattata taatgcaaaa atttatgatt ttggttatga aaattatgtt atgatgtact      4440
     gaattagttt tattagtaat atgtactagt ttctagttta gtcataaaga ttatgttatg      4500
     caattagttt atgaattact tatgatatga tgttatgaaa tcataaaaat attatgttta      4560
     gaattaatct tatgtattac gatacttatg tgttatgatc agaattctta tgtctcttat      4620
     gttaaatttt ttttgattat gaattgctta tgtaacctct tatgtaacct aaagtattat      4680
     gttaacgtta ggatagaacg aggtcgttct aattgtcagg atggtcgagt                 4730
//
ID   Gypsy-27_SiOr-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-201
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 396-396 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 201 BP; 75 A; 23 C; 35 G; 67 T; 1 other;
     tgtaagaatt atttaaatat agcgccaaaa actaggctga caactccttc ctggaagcat        60
     agaattatgg gtagcttgtt gttatggtgt tgttagttgt tatgtattga gaaataaaca       120
     aaattggaga ataaagtata aaaattacat gaagtcattt ttattgtaaa tacaataaaa       180
     attaaggctc ccccwtttat a                                                 201
//
ID   Gypsy-27_SpEx-I repbase;    DNA;    INV; 5500 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5500
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4096-4096 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           511..1719
FT                 /product="Gypsy-27_SpEx-I_1p"
FT                 /translation="MSQQLRDLHAKLKYLREYVIKLGPNRRTEDLGFKKLE
FT                 EAEKEYNKLECILTQLNQEIKDQKIDKESCDIFQTLIDETQHNFKKIKSLF
FT                 SSRENSSQTSAKDLIEYFNCPTKMSDSFDIKTAISLLPVMNGQEQVTNQLI
FT                 DGILLYSSLINDDSKSKLIDFVLKTRLSPSAKLRLKATYADIESLVGDIRA
FT                 NLLPKKSAVALQTQLFRATQGRRTIEKFGSEIEELFVNLTIAQANEKRDAY
FT                 EVLRPLNEKTAIKRFSDGLADKRLSTIIASRQFATLSEAITAAVDEQSMSF
FT                 HPQEQVMQFRANHNVKRGNRSGFRGRGDRHFYNTKKNYNRNYNCYESSTGQ
FT                 RTSHIVNRGKHSGDQRQRQHFRGRPMRCQRVQHNTQESNSQDKLRNDDTNN
FT                 NDNLEFFRT"
FT   CDS           1706..5362
FT                 /product="Gypsy-27_SpEx-I_2p"
FT                 /translation="SFFAPKQCNHSIFSYSNFSVINCHLKNSSIDLNLLID
FT                 SGASLCVLKYEWLSRHRNLLNLVKQDKIVIKGISGNLTSMGYIYLNIIINH
FT                 VNFNQKFYIFEQLSCAAEGILGQDFFERYNAVLNYKDGTLTLESQNESVSV
FT                 NVNKNTFTIPPRCEVIKHIPTSQNRDCVVVSKEVYKGVYTAGVISKPHNGF
FT                 IPVRILNTTDSSVSINTSELIISCLDNFYVCKFDDDCLSVDRVRTLLTTLQ
FT                 LHTYLNKEEQISIENICAKYADVFHLPGDTLTTTNLIEHSIQLKEDASPSY
FT                 VKPYRLPKALKGEVQKQIDEMIKNDIIEESISEWSSPVLLVPKKTDRSGER
FT                 KWRLVVDYRQLNNRIKDDKFPLPNITEILDSLSNNIYFSKLDLSQGYYQLS
FT                 LDEKSRKYTAFTTDRQYQMKRCPMGLKTSPSAFARLMTIAMSGLNYKSCFL
FT                 YQDDCIVVGNCLETHNKNLIKILECLRKVNLKLNPLKCEFLRKEIVYLGHK
FT                 ITSEGIFPEPSKVSCLQKYPVPQNVDEVKRFVAFANYYRRFIPKFAEIAYP
FT                 LNALCKKNVPFVWSDECERAFHKLKEILISPTVLDYPDFSDKNTFTLQTDA
FT                 SKLGLGAVLSNSNGKVVAYASRNLKPPETRYPVIELELLAIVWAVRHFRPY
FT                 LYGKKFYIKTDHKPLIYLFNMTDPSSRLTKFRLYLEEYDFEISYVPGRHNA
FT                 AADALSRIPITSNSLKEMQQHVVSVMTRAQARRLRTDCDNDNMTTEVSSTS
FT                 RPDQPKVVEILKRPIDSIELILFCNKNTLKRIEKLKHFNSDNGNYIFVPEK
FT                 SAIFIISQSLPTVSVLTRELQRFCKQIKINELVIIKSKQYERFVNDFIKEI
FT                 SHLKDVPKLLVIKDVIRVTDKDTKTVILNDFHLLPTSGHAGVNRMLNNIRK
FT                 YYYWPGMTNDVSEYVKKCKNCQIQKHSNRHTKEPMIITSTASTAFERVSLD
FT                 LMGPLDVDNFNYKYILTLQCDLTKYVEAYPLEKKDTVSVARSFVNNFILRY
FT                 GIPTEIITDQGTEFMSSVFTEICNLLHITKLHSTAYHHETLGGLENTHKVL
FT                 GAYLRIQCDNNKTDWSGWLPFWCFSFNTTVHSETKYTPFELVFGKHCNLPS
FT                 NIEQNSYVDPLYNPDSYPLQLKYRLQRAQAEARNNLLFNKKLRKINFDKTI
FT                 NSIKYKKGDLILIKNQVGDKLDKIYLGPYEVIEDVSPNVKILKDNKAYIIH
FT                 KNNTKKFIT"
XX
SQ   Sequence 5500 BP; 1972 A; 870 C; 1028 G; 1625 T; 5 other;
     tggcgaccct tagccagcag ttaaaatttt gcaacatacg taaaatacga aagtagctga        60
     ataaattatg aagaaataca gttatgaaga ataaaagttt gtgaagacga gaaataacaa       120
     agacagaaga ttttcaaact acagaagaca gaaaaaccct cacagaagat ttggacgagg       180
     caacgaaaac aatataagaa gacagaagag tgtgttgctg ccgggagccg ggagaatgct       240
     caagccttat gatgagagga tatgcagggc gccgggagat aaattgtacg ggtccagtgt       300
     ggagcagctg ggagtcagtt cgagtccaat gctgaggagt tcagtgaccc gcgctacgtg       360
     agacgtcatg acctacatat acgttgacag taaatatgcg cctactgcac tgtaagtttt       420
     tgttctacga ttgtattttt ttacgttatt ataagctatt gttattatta aggtcatgcg       480
     gaattacttt atattcagtt taaggaaatt atgtcgcaac aattgcgaga tttacatgct       540
     aagttaaaat atttaagaga atatgtaata aaacttggtc caaatagacg tacagaagac       600
     ttaggtttta agaaattaga ggaagctgaa aaagaatata ataaattgga gtgtattttg       660
     actcaactga atcaagaaat taaagatcag aaaatagata aagaatcttg tgacattttc       720
     caaacattaa ttgatgagac acagcataat tttaagaaaa taaagagctt attttcttcg       780
     agagaaaata gtagtcaaac tagtgctaaa gatttgatag aatattttaa ttgtcctaca       840
     aaaatgtcag actcatttga tattaaaact gcaatttccc tgttgccggt aatgaatggc       900
     caggagcagg tgacaaacca acttatcgat ggtatacttc tttacagttc gctcatcaat       960
     gacgacagta aaagtaaatt aatagacttc gtattaaaaa cccgtctctc tcctagtgct      1020
     aaactgcgcc ttaaagctac atatgctgac attgaaagtt tagttggaga tattcgcgct      1080
     aatttgttgc cgaaaaaatc ggctgtagca ttacaaaccc aattatttag agctacccaa      1140
     ggtcgtagga ctatagaaaa atttggttct gagattgagg agttgttcgt aaatctgacc      1200
     attgctcagg ctaacgagaa gcgcgatgca tatgaggtat tgcgtcctct caatgagaag      1260
     actgcaatta aaaggtttag cgatggtttg gctgacaaac ggctcagcac catcattgcc      1320
     tcgcgacagt ttgcgacctt atctgaagct ataacggctg cggtagacga gcagtctatg      1380
     tctttccacc cacaagagca ggttatgcaa tttagagcca accacaatgt taaacgcgga      1440
     aaccgcagtg gatttcgagg ccgaggagat aggcatttct ataacaccaa gaaaaattat      1500
     aatcgtaatt ataattgtta tgaaagtagc acaggtcaaa gaacttcaca tatcgtaaat      1560
     cgcggtaaac actcgggcga tcagcgccag cgtcagcatt ttcgcggacg tccgatgcgt      1620
     tgtcagcgtg tacagcataa cacgcaagag tccaatagcc aagacaaatt gcgcaacgat      1680
     gacacaaata ataatgacaa tttagagttt tttcgcacct aaacagtgca atcattctat      1740
     ttttagttat agtaatttta gtgtaattaa ttgtcatctt aaaaatagta gtattgatct      1800
     taatttgtta attgatagtg gagctagttt atgtgtactg aaatatgaat ggttgtcgcg      1860
     gcataggaat ttattgaact tagtaaaaca ggataagata gttataaaag gtattagtgg      1920
     taatttaacg tcaatgggat atatttattt aaatattata attaatcatg tgaattttaa      1980
     tcagaaattt tacatttttg aacaattatc ttgtgccgca gaagggatac tcggtcagga      2040
     ctttttcgag cgatataacg cggtattaaa ttacaaagat ggaacactga ctttagaatc      2100
     tcaaaacgag tctgttagtg ttaatgttaa taaaaatact tttacaatcc caccccgttg      2160
     cgaagtaatc aaacacatcc ctacgtcaca aaatcgtgat tgcgtcgttg tgtcaaaaga      2220
     agtttataaa ggcgtgtaca cagcgggtgt aatatcgaag ccacataatg gatttattcc      2280
     agttaggata ttaaatacaa cagatagttc agttagtata aacacttcag aattaattat      2340
     tagttgtcta gataactttt atgtttgtaa gtttgatgac gattgtttat ctgttgatag      2400
     agttagaact ttactcacta ctttgcaact acatacatat ctgaataaag aggagcaaat      2460
     aagcattgag aacatatgtg ccaagtatgc agatgttttt cacttaccag gtgatacgct      2520
     cacaacaaca aatttaatag agcattcaat ccaactaaag gaagatgcgt ctccatcata      2580
     tgttaagcca tatcgattgc caaaagcatt gaaaggcgag gtacaaaaac aaatagatga      2640
     aatgattaaa aatgatatta tagaagaatc tatttcagag tggtcaagtc ctgttttatt      2700
     agtacctaaa aagaccgata ggtcaggaga aaggaaatgg agacttgtag tagactatcg      2760
     ccaactcaat aataggataa aagatgataa gtttccgtta cctaacatta ctgagatcct      2820
     agattcacta tcaaataaca tatatttttc aaaattagat ctcagtcaag gttattatca      2880
     actgtcatta gacgaaaaat ctagaaaata tactgcattc acaacagaca ggcagtatca      2940
     aatgaaacga tgcccaatgg ggttaaagac atccccaagt gcctttgcac gtcttatgac      3000
     tatagcgatg tctgggttaa attacaaatc atgtttcctt taccaagacg attgtattgt      3060
     tgtaggtaat tgtcttgaaa cgcacaacaa gaatctcata aaaattttgg aatgtttacg      3120
     aaaagttaat ttgaaattaa atccattaaa atgcgaattt ttgcgtaagg aaatagttta      3180
     tttaggtcac aaaatcactt cagaaggtat atttcccgaa ccatcaaagg tatcatgcct      3240
     gcaaaaatac cctgtcccac agaatgtaga cgaagtcaag agatttgttg cgttcgctaa      3300
     ctattatagg cgttttattc caaaatttgc agaaatagct tatcctttaa atgcgttatg      3360
     taagaaaaac gtaccgtttg tgtggagtga cgaatgcgag agagcatttc ataagctaaa      3420
     agagatactc attagtccga ctgtacttga ctatccagat ttcagtgaca aaaatacttt      3480
     tacgctgcaa actgacgcat caaaacttgg attaggcgcc gtactgtcta atagcaatgg      3540
     caaggtagtc gcgtatgcta gccgtaactt gaaaccacct gagacgcgat accctgtgat      3600
     tgagttagaa ctacttgcta ttgtttgggc agttcgacat tttagacctt atttatatgg      3660
     gaaaaagttt tatataaaaa ctgaccataa gccattgatt tacttattta atatgaccga      3720
     tccttcaagc cgtttaacta agtttagact atatcttgag gagtacgatt ttgaaatcag      3780
     ttatgtccca gggcggcaca acgcagctgc agatgcattg agccggatac ctattacatc      3840
     caacagttta aaagaaatgc aacagcatgt agtatcggtc atgacaagag cacaggctcg      3900
     tagattacgt actgactgtg acaacgataa catgactacg gaggtatcct ctacttcaag      3960
     gcctgatcaa cctaaagtag tggaaatcct caaaagacct attgacagca ttgaattgat      4020
     tctattctgt aataaaaata cactaaaacg gatagaaaaa ttaaaacatt ttaatagtga      4080
     taatggtaac tacatattcg tgcctgaaaa atcagcaatt tttattattt ctcaatcgtt      4140
     gcctaccgta agtgtgttaa cgagagaatt acaacgtttt tgcaagcaaa tcaaaataaa      4200
     cgagctcgta ataattaaaa gcaagcaata tgaacgattt gtaaacgatt ttataaagga      4260
     aataagccat ttgaaagatg tacccaagtt acttgttatt aaagacgtga taagagttac      4320
     tgacaaagac acaaagacag tgatcctaaa tgacttccac ctgttaccca caagtggcca      4380
     cgcgggggta aacagaatgt taaataatat taggaagtat tattattggc caggaatgac      4440
     caatgacgta tcagaatacg taaagaaatg taaaaattgt cagattcaaa agcattccaa      4500
     tagacatacg aaggagccga tgattatcac atctacggca tccactgctt ttgagagagt      4560
     tagtttagat ttaatgggtc cattagatgt agacaatttt aattataagt atattctgac      4620
     gttacaatgt gatctgacta aatatgttga agcttatccc ttagaaaaga aggatacagt      4680
     ttcagtagca cgatcatttg taaataattt tattcttaga tatggtatcc ctacagaaat      4740
     aataacagac cagggaacag aatttatgtc atcagtattt actgaaattt gcaatttatt      4800
     acatattaca aaactgcatt caacagctta tcatcatgag actcttggag gtttggaaaa      4860
     tactcataag gttctaggag cttatctaag gattcagtgt gataataata aaacagattg      4920
     gagcggttgg cttccgttct ggtgcttttc atttaacact acagtacact ctgagacaaa      4980
     atacacccca tttgaattag tatttggtaa acattgtaat ttaccatcta acatagaaca      5040
     aaattcatat gttgatccct tatataatcc tgattcttat cctttacaat taaagtatag      5100
     acttcaaaga gcacaagctg aagcaagaaa caatttgtta tttaataaaa aattaagaaa      5160
     aataaatttt gataaaacta ttaattcaat aaaatataag aaaggagatt taatattaat      5220
     taaaaatcaa gtaggagata agttagataa gatttattta ggaccatacg aagtcataga      5280
     agatgtctca ccaaatgtta aaattttaaa ggataataaa gcatacataa ttcataaaaa      5340
     taatacgaaa aaatttataa cttaaaataw tgttttattt tagttttatt ggattttgtt      5400
     tgtaaagtat gaagtttaat aawatmmtgt gttaattttg taagtttaaa aaaaaataga      5460
     attatgtaat aatatcattt ttttwaaaaa agggggaagg                            5500
//
ID   Gypsy-27_SpEx-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-119
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4156-4156 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 119 BP; 34 A; 27 C; 15 G; 43 T; 0 other;
     tgtagtgtgc agctcgccta accttatatt tgtaactgca cacactaaat tatgacatta        60
     ttacacgaat tgttgacttg aacagttctc ttttattttg cctacatcac tccaataca        119
//
ID   Gypsy-27_TrNi-I repbase;    DNA;    INV; 5133 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5133
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 230-230 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1154..5038
FT                 /product="Gypsy-27_TrNi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSSQLPAMDNFDCEGDSNSLGHRWEKWKRALDIYLLA
FT                 AGIDKPLKKRAVLLHTAGLAFQEIYYNLPGAHVEETESNDVFKIAVEKLDA
FT                 YFSPKQSFLYERHIFRLLKQESGEKFEKFLVRLRNQSNKCNFARKDDDLID
FT                 QIVEKCSSSDLRKKILKLGDAVTIDQIILEANTIETVERQFQGFQGNSSLD
FT                 INKIGTRPKNINIRCTRCGSQYHDGNSDKCMAKDKICAKCGYTGHFRSQCR
FT                 TRQIKRKAIPDARRSHNAKKSKLNDPSSRALNENTTTTSPTKEQTKPIPPN
FT                 INYVFHIDDDAEIMCQVGGVKVKMLIDSGSKTNIIDDKTWEYLKSNAVGAV
FT                 NQKKGSDQVFMAYGSKDPLEVLGSFESTIAIGPEKQSAKFYVIKNGTRNLL
FT                 GKETAMRLKILKLGVSINSLDTETDTFPKFKDVQLDIAIDKSVTPICQPYR
FT                 RVPIPLENKINDKIAKLVKQDIIEPVDKASSWVSPLVPILKADGDVRLCVD
FT                 MRCANKAILRENHPLPTMTQLLPKLHKARVFSKLDIKDAFHQVEIKEGCRD
FT                 ITTFITSKGLFRYKRLMFGISCAPEHFQKILERMLLSCEGVINFIDDIIVF
FT                 GSSAEQHNARLQKVMHTLKQNGVLLNKNKCMLNKSKIEFLGHELSSEGIQP
FT                 LNKYVKTIASFREPKSVEEVQSFLGLVNYIGKWIPNLATVTEPIREVLRHK
FT                 LSKHADISEFWKNRQANAFAELKRSLSNLRTLGFYDPHDKTQVIADASPVG
FT                 LGAVLIQYDLHGPRVIAYGHKSLSEVEKRYCQTEKEALALVWAIEHFSMYL
FT                 YGLKEFELVTDHKPLEVIFGPRSKPCARIERWVLRLQSYNYKVVYCSGKNN
FT                 IADSLSRLCPNQNSQPYDDGHHVNQIVQFARPLAVSTEDIISESIKDVEIQ
FT                 LVKVGLSDKRWDPKVNNYKLFENELWVHEDILLRGNKIVIPRNLRKQVLTS
FT                 AHEGHPGIVAMKGRLRTKVWWPKLDKDAESMVKSCQSCTLVSGPSPPEPMK
FT                 RRELPSQPWVDIAVDFLGPLPSGHHLFVIIDYFSRYKEIKVMKSITSQETI
FT                 AVLKEIFSRLGVPVSMTSDNGRQFTSEEFKSFCLEFGIKLYHSIPYFPQQN
FT                 GEVERQNRDIIKRLKISQCQRSDWKDDLLSYLMMYNSTPHSTTGKTPSELF
FT                 FNRQFRDKIPSVVDVENRQVNFEVYDRDKMMKEKGKIREDRKRKARNNDIS
FT                 IGEKVYVKNLIKENKLTPNFSPTPHTVISASGGDINIRNDETGQELRRNII
FT                 HLKRVQGQWKIHNQEEDENYESKHSSGMETDEEE"
XX
SQ   Sequence 5133 BP; 1864 A; 912 C; 988 G; 1369 T; 0 other;
     aactggcgac gaggaaaaag aacgtgagta aataatttca ttttacacga ctacaaaatg        60
     tgaaccttgt gttatcagta tggttacgat ttttctaata ctatacgaaa gggttgcagt       120
     gtcttaacaa atcctaaata aatatcagct taaaatcgtt tcataatcat attaaaggaa       180
     aagaaaggtt aatattttaa aataataagc atcgactgac ctaaatttac taataccatt       240
     agtaaattta tcaattacgt aattattatg ataactagaa tgctctaaat catgttatta       300
     actgtattaa tatagcattt gcgtggtaaa taaatccgta ttgatagcaa aaggtttgaa       360
     cctgtgaaca tagtcgtgaa agttatgcta tacataccaa tataattagc tcctctgggg       420
     tatagttggt acatccatta attagcttgc tgattttgat cctaataaga aacttattca       480
     ctttccgttg tgagatttgc caattagttg ataaataagt tttacttata gtgacatcct       540
     attttaattt accctcataa atttatctta agcggattca agcccacaag taaatagtac       600
     acaacctacg aagtagataa acgaggcagt aattaaggac acaactactt tactgtcaga       660
     tggtacgagc tattgggata taccgattat acatccaaca aaatgtgcct gtatgtatta       720
     gcctagtcgg gataacaatc cgaccgagta agtgcaccgt ataacgaacg agtaaaaact       780
     cgtcaagttc acgtaaactg tcattcgatt tttatgtcta aatgtcagtt tatgctatta       840
     aaaggtcgtt ccaaattgaa attgagactg cttccaaagt aataaaaggt cagctctaag       900
     ctaagctcat gagatttaca atttaaaata ttaaataaag ctctattagg ttacttattg       960
     atgcaaattt aaataataac tacctacagt tagataaata ataattagta gttaatacac      1020
     atctaaatga ataaagaaaa tgtttaatag ttagaccagt aaagataaat aataataata      1080
     ataaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaactac ctccgcgttt atgtacttac      1140
     agatcgtccc ataatgtcgt ctcaactacc ggctatggat aactttgact gtgaaggcga      1200
     ttcaaattca ctaggccatc gttgggagaa atggaaacgc gccctagaca tttaccttct      1260
     agctgctggt attgacaagc ctttaaaaaa acgagccgtt ctactgcata ctgccggcct      1320
     cgcgtttcag gaaatttatt acaatcttcc cggcgcacat gtagaagaga cggaatctaa      1380
     cgacgttttc aaaattgctg tcgaaaaact tgacgcgtac ttttcgccca aacaaagctt      1440
     cctgtatgag aggcacatct ttagactatt aaaacaggaa tccggcgaaa aattcgaaaa      1500
     gttcttagtc agattacgta accaaagcaa taaatgcaat ttcgcgcgca aagatgatga      1560
     tctcatagac caaatagtag aaaaatgcag ctcctctgac ctaagaaaaa aaatcctaaa      1620
     attaggagat gcggttacca tagatcaaat tattttggaa gcaaatacta ttgagactgt      1680
     cgagagacag ttccaaggat ttcaaggaaa ttccagcctc gatattaaca aaattggaac      1740
     aagacctaaa aatatcaata tacggtgtac tagatgtgga agtcaatatc atgacggcaa      1800
     tagtgataaa tgtatggcaa aagataaaat ctgcgcgaag tgtgggtata cgggccactt      1860
     caggagccaa tgtcgcacca gacaaataaa acgaaaggca ataccggacg ctcgtagatc      1920
     gcataatgct aaaaaatcta aattaaatga tccttcatct agagcattga atgaaaacac      1980
     tacaactacc tcacccacta aggaacaaac aaaaccaatt ccaccaaata tcaactacgt      2040
     gtttcatata gacgacgatg cggaaataat gtgccaagtc ggaggtgtca aggtaaaaat      2100
     gcttatagac tcgggtagta agacaaatat aattgacgat aaaacctggg aatatttgaa      2160
     atcaaacgcg gttggtgcag taaaccagaa gaaaggttct gatcaagttt ttatggcata      2220
     cgggtcaaaa gacccgttag aggtgcttgg ttcatttgag tctacaatcg caataggacc      2280
     cgaaaaacaa tctgccaaat tttacgtcat aaaaaatggt actcgaaatt tgttgggtaa      2340
     agaaactgcc atgagactta aaatattaaa attaggggtg agtataaatt ccttagacac      2400
     agagactgac acattcccaa aatttaaaga cgttcagctt gatattgcga tagacaaatc      2460
     agtaactcca atttgtcagc catacagaag ggtacccatc ccacttgaaa ataaaattaa      2520
     tgacaaaatc gctaaattag taaaacaaga tatcattgag cctgtcgata aagcttctag      2580
     ttgggtatct ccactcgtac caattttaaa agctgatggc gatgttaggc tttgcgttga      2640
     catgagatgt gctaataagg caattctacg ggagaatcat cctttaccca caatgacaca      2700
     actccttccg aaattgcaca aagctcgtgt attttctaag ctggatataa aagacgcatt      2760
     ccaccaggtg gaaataaaag aaggatgtcg ggacataaca acatttatta ctagtaaagg      2820
     gttgtttcgt tataagcggt taatgtttgg gatatcgtgt gcaccagaac atttccaaaa      2880
     aattttagaa aggatgcttc tctcttgcga aggtgtcata aactttatcg acgatatcat      2940
     cgtgtttgga agtagcgcgg aacaacataa cgctagatta caaaaagtta tgcatacatt      3000
     aaaacaaaat ggtgtattac tgaataaaaa caaatgtatg ctcaataagt ctaaaattga      3060
     attccttggc catgaactat cttcagaagg tattcaacct ctaaacaaat atgtaaaaac      3120
     tatagcgtct tttagagaac caaagtcagt ggaggaagtt caaagcttcc tgggacttgt      3180
     taattacatc ggaaaatgga ttccgaactt agccactgtt actgaaccga ttcgcgaagt      3240
     tttgaggcac aagctttcca aacacgctga tatttccgaa ttctggaaaa atagacaagc      3300
     aaacgcgttt gctgaattaa aaagaagttt aagtaaccta cgcaccctag gattttacga      3360
     ccctcatgac aaaacgcaag tgattgcaga tgccagccct gtagggttag gagcagtcct      3420
     catccaatat gacctgcatg gtccacgagt tatcgcatat ggtcacaaga gtcttagtga      3480
     ggtcgaaaag cgatattgtc agaccgaaaa ggaggcttta gcattggttt gggccataga      3540
     acattttagc atgtatctct atggcttaaa agagtttgaa ttagtcaccg accacaagcc      3600
     tctcgaggtg atattcgggc cacgatctaa accctgtgca agaatagaac gttgggtatt      3660
     aaggttgcaa tcctacaatt ataaagtagt atactgttcg gggaaaaaca acatagctga      3720
     ctcactttct aggttatgtc ccaatcagaa ttcacagcct tacgatgatg gtcatcatgt      3780
     taaccaaata gttcaattcg cgagaccctt agccgtatcc actgaagata tcatcagtga      3840
     gtccataaaa gatgtcgaaa tccaattagt taaagttggt ctgtcagata aacgctggga      3900
     tccaaaagtg aataattata aactctttga aaatgaactc tgggttcacg aagacatatt      3960
     gttacgtgga aataaaatcg taatacctag gaacctccgt aaacaagtgt tgacatcggc      4020
     tcatgagggt caccctggca ttgtcgctat gaaaggcagg cttcgaacta aggtgtggtg      4080
     gccaaagctt gataaagacg ccgaaagtat ggtaaaaagc tgccagagtt gcactttagt      4140
     gtcagggcca agtcctcctg agccgatgaa aagacgagaa ttgccatccc aaccatgggt      4200
     cgatatagcc gtcgactttc taggtccact tccgagtggg caccacttgt ttgttataat      4260
     tgactacttt agtcgataca aagagatcaa agtcatgaag tcaataacgt cacaagaaac      4320
     aattgccgta ttaaaagaaa tcttttcaag gttaggtgta cccgttagta tgacatctga      4380
     taatggacgt cagttcacca gcgaggagtt taaatccttc tgcttagaat ttggcattaa      4440
     actttatcat tctataccgt attttccaca acagaatggc gaagtcgaaa gacaaaatcg      4500
     cgacataatt aagcgtctta aaataagcca atgccagaga tctgattgga aggatgatct      4560
     cttaagctac cttatgatgt acaacagtac accacatagt acgaccggga agacaccatc      4620
     ggaactgttt ttcaaccgtc agtttagaga taaaatccct tctgttgtag atgtcgaaaa      4680
     taggcaagta aatttcgagg tttatgacag agacaaaatg atgaaagaaa aggggaagat      4740
     aagagaggat aggaaaagaa aagcacgaaa caacgacata agtataggag aaaaggttta      4800
     cgtaaaaaat ttaattaaag aaaataaatt gaccccaaat ttcagcccta caccacatac      4860
     cgtgattagt gccagtggag gcgatataaa tatcagaaat gatgaaactg ggcaagaact      4920
     gcgaagaaat ataatacatc tgaaaagggt acaaggtcaa tggaagatac ataatcagga      4980
     ggaagatgaa aattatgaat ctaaacatag ttcaggaatg gaaacagatg aagaagaatg      5040
     aaacaatata agcgctatta aagttaggat aagcatgatt tgcaactaga cttatataat      5100
     cgatcaattt caagatttat tgaaaaggag aga                                   5133
//
ID   Gypsy-27_TrNi-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-173
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 184-184 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 173 BP; 47 A; 39 C; 41 G; 46 T; 0 other;
     tgtgatgtac acgattataa attaataaac attgcgggta cgaaccgtcc tcgcgcacta        60
     ctacccccga gcggtcgcgg cgagtggacg tgtcgcaggc gcattgaaca taataagtat       120
     ctgttttatt tgttatccta cctaaactaa ttgtgtacgt gggagacagc aca              173
//
ID   Gypsy-27_TrVa-I repbase;    DNA;    INV; 6725 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6725
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 272-272 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..2271
FT                 /product="Gypsy-27_TrVa-I_1p"
FT                 /note="zinc knuckle."
FT                 /translation="MSICFTDYLLIGCIFGCLITKRPYFFLKFQPLFVFVL
FT                 VMLPILPELLLKEHLIYECAIRGQSSDGDQAVLRRTLRQVLAEGRGPSLIF
FT                 ISTLDPNQEVETVNDIALNLGRLIDEFEVDPVSGREVQIVARLEHCLRRLE
FT                 NLKITPQEKEILENIDESHKNISTILGNFKKHVISVSGSFTDLSSCCSIAS
FT                 ASMRTKVTDTTQVSASDSWLSQHPLNSVPESNVSGSTSNVFGSTFSPSTSA
FT                 TWGLRPASLGGSGPRNAGPASQSTGIRPALRNSLSRAHSRNPGVRNVFPHG
FT                 TTSTTPSIVTMGPIVSPAISNIPNWTQGYSISEAPVNSLSHSFSNQASLVD
FT                 SHIQGNPIVSLGEHFNPVIQPPNNGHLWSGGIPFSSSARSQCPANRYGKLP
FT                 NPIDRAFRNWSEPDGQKTDVLLRFLGCLLDLKEAHNFEDSTLLRDVLPYCR
FT                 KPLSDRILHALRMGFSFDQFHEDVLRHFLPRHLGEQWRIFAINRLQCSDEP
FT                 FGNFVQDIRHMARVLRVNMFERDLVETIFNNRNPICRGYFASEPTPHSFAD
FT                 LDLLVRVAQDCAFADSQRDASRHSNMQQVGPASRVTQGWPAVYSLEGTSGG
FT                 VPHDMSRPPPVVNSGANTVQAHEDKRHPSQITCYNCGERGHISPKCPRRQE
FT                 SKNL"
FT   CDS           2250..5489
FT                 /product="Gypsy-27_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KARIKKLVSSRLDRSGNAEKICLNNIFSNVKSTSSHT
FT                 PLPLIGILLGEITHTALLDSGSARCLISSRVFNSIRKSPFVKKVTAADLCC
FT                 YTATQEVIPIREVATLHFKIGPFSWNYDFLVAPGLHLDFIVGCDFIRFAGV
FT                 VIDLQRSVFWFRFKERHCLPITGFEQIMFAKVGDSPDGGVKPPPSTTEKNS
FT                 GPNLSHLDLDSRRRVMEVLVKYPEVLTEELGCTSKLEYDIKLIDSTPVKSH
FT                 PYNLAPPKMSILKDKVEKLIQKGVVRSSKSSYSSPAFLVPKGEEDSRMVID
FT                 YRKLNQKIDIEAVPLPNINTAFSWFSKARYFTVLDLNSAYFQVPLSERSKP
FT                 FTGFCTPWGLFEFQRVPFGLATGAQVLTRLGNLLFSDLMFNGLVNFIDDYV
FT                 LYAETLEEMLRLLEIVLQRFKEAGITVNPEKLQVAVSKIAYLGHLISGQGI
FT                 EIDPSRIQSLKDFPPPRDAKGVARFIGMANFYNKFVPNFAERAAPLNTLRR
FT                 KGVKFEWKEEQQQAFEDLKSCLINPPILAKPDFTRPFILQTDGSSVALGAV
FT                 LLQEVDGCRMPVAYGSRSLTPQERHYCAYEIECLGVLFGLEKFRVYLEHQE
FT                 FQLECDNQALSWLLGHPRQLGKIGRWVMRIAAFKFKVKHIKGSENIFADAL
FT                 SRMFYPEDIDNEVAGPVFSLAVNVPQFPMGHSSILEHQLKDDALSTKIEAL
FT                 KRGETLPLYSLRKGVLCCSSARDKAPKIVLPGELVPMVFQYYHQSPFGGHL
FT                 GMYKTVHRIRQHFIYPGMNADIKSRVGQCETCALSKPAQNSLLGKLASEVP
FT                 TRPYEKISADYVGPLVRSKQGNQYILVAVDYFSKFCWLMPVRRATSEAAIK
FT                 ELSKVFQGFSVPSKLVTDNGKHFVSNAFNNFCFSLGIQHIKTSPYYPRANL
FT                 AERVNRNLKSALIAYHSRDQTLWDTNLCWLQLAFNCARHEAHRHTPFELLF
FT                 SFPPKHPLSLLWRIEDLLPDDTKKVPAKWNEVKRNLLKAHGKVEVKYNLKR
FT                 REHHFTVGDLVLVKSFNKSDKARKVMAKLCNRWSGPYRILHFNKSVTASLG
FT                 DPKSGRFRRTAHVSHLKKYPNGV"
XX
SQ   Sequence 6725 BP; 1572 A; 1451 C; 1473 G; 2229 T; 0 other;
     aaaatggtag cgtgaccgtg gtttctgtgt cctaaaatat ttcttcgtaa aaaaaaaaaa        60
     aaaaaaaaaa aaaaaaaacc acattatttg ttcgtttcgt ttttaagagt gccgttttcc       120
     ctgcattact ttattttttg atctgtttga tgattttcta atttttgcgc tgcgatagtg       180
     ttgaattatg ttgcggctat gtttatgtct ttttcgattt acccttgcgt cgtgatgtcc       240
     ctgatatttt atttttgttt atctattttt tgtgtgtatt gaatttagag tgttttgtat       300
     tttgatgcct ttatgtctat ctgttttact gattatttgc ttatcggttg catcttcgga       360
     tgtttgatta ccaagcgtcc ttatttcttt ttgaaatttc aacctctttt tgtttttgtt       420
     cttgtcatgt taccaatctt gccagaactg ctcttaaaag agcatttgat ttatgaatgt       480
     gccattcgag gccaaagttc ggatggggac caggccgtgt tgcggcgcac cttgcgccaa       540
     gtattggcgg aggggcgcgg tccaagtttg atttttattt cgactttaga tcccaatcag       600
     gaagtcgaaa ccgtgaatga cattgctttg aatctcggga ggcttataga tgagtttgaa       660
     gtggacccag tgtccgggcg tgaagtccaa attgtggcac gcttggaaca ttgtctaagg       720
     cgtttggaga atttgaaaat aacacctcag gaaaaggaaa ttttagaaaa tattgatgag       780
     agccacaaaa atatttcgac gattttaggc aattttaaaa aacacgtaat ctcagtatcg       840
     ggttctttca ctgatctctc gtcatgttgt tccattgctt cagcaagtat gcgaacaaaa       900
     gttacagata ccacacaggt ttctgcgtct gactcgtggc tgtcccaaca tccactaaat       960
     agcgttcctg aatccaatgt ttctggatca acctccaatg tttttgggtc aacgtttagt      1020
     ccctctacat cagcaacctg gggtttacga ccagcatctt tggggggttc tgggccgcga      1080
     aatgcaggtc cagcgtcaca aagtacgggt attagaccag ctttacgcaa ctctttatca      1140
     cgcgctcatt cgcggaatcc cggtgtgcgt aatgttttcc ctcacggaac tacttccacg      1200
     acaccgagta tagtgacaat gggtccaatt gtttctccag caatatctaa tattccgaac      1260
     tggacccaag gttacagtat ctcggaagct cctgtgaatt cactgtccca ctctttctca      1320
     aaccaagcat cgctagtgga tagtcatatc caaggtaacc ctatcgtttc tttaggagaa      1380
     cattttaatc ctgtcattca acctccaaat aatggacatc tgtggtcggg aggtatccct      1440
     ttctcctctt ctgcccgatc acagtgtcca gcaaatcgtt atggtaagtt acccaatcct      1500
     attgatcgtg catttcgtaa ttggtctgag cccgatgggc agaagaccga tgtgcttttg      1560
     cgttttttgg gctgtctctt agacctcaag gaagcgcata attttgagga ctctacgttg      1620
     ttgcgggatg tactcccata ttgccgtaaa cctctatcgg atcgtatact tcatgcttta      1680
     cgcatgggat tttctttcga ccagttccac gaggacgtat tacgacattt tctaccaagg      1740
     caccttggtg aacagtggcg aatttttgcc ataaatcgtc tccagtgctc agatgagcca      1800
     tttggaaatt ttgtacaaga cattcggcat atggctcggg ttttacgagt taatatgttt      1860
     gaacgagatt tggtcgaaac tatttttaat aaccgtaatc ctatttgtcg cggttatttt      1920
     gcttcggaac ctacaccgca ttcgtttgcg gatcttgatt tattagttag ggttgcacag      1980
     gactgtgcct tcgccgactc gcaacgtgac gcttcgcgtc acagtaatat gcaacaggtg      2040
     ggccccgcga gtcgagtgac tcaaggttgg cctgccgttt acagccttga aggaactagt      2100
     ggtggtgttc ctcacgacat gtcgcggcca ccacccgtgg taaattcagg agccaatact      2160
     gtccaggctc atgaagacaa acgtcaccca agtcaaataa cttgttataa ttgcggggaa      2220
     agaggacata tctctcctaa atgtcctaga aggcaagaat caaaaaactt gtaagttctc      2280
     ggcttgatcg gagtggcaat gccgagaaaa tatgtttaaa caatatcttt agtaatgtta      2340
     aaagtacatc ctctcacact cccttgcctc ttataggcat tttgcttggt gaaattactc      2400
     acaccgcgtt gctggattcc ggcagcgcaa ggtgtctgat ttcaagcaga gtatttaatt      2460
     ctatacgtaa gtctcccttt gtgaaaaagg tcactgctgc cgatctgtgt tgttacacgg      2520
     ctacgcaaga agtaatccct atacgcgagg ttgctacctt gcattttaaa attggaccct      2580
     tttcgtggaa ttatgatttc cttgtcgctc ctggcctaca tttagatttc attgtcggct      2640
     gtgactttat acgatttgct ggggttgtta ttgaccttca acggtctgta ttttggttcc      2700
     gtttcaaaga acgtcattgt ttgcctatca ccggatttga acaaatcatg tttgctaaag      2760
     tcggcgacag tcccgacggc ggcgttaagc ctcctccttc cactacggag aaaaattccg      2820
     gacccaatct ttctcattta gatctggact cgcgacggcg agtcatggaa gtacttgtga      2880
     aataccctga ggtcctcact gaggaactcg ggtgtacttc caaacttgag tatgacatta      2940
     aattgatcga ttctactcct gttaagagcc acccgtacaa tcttgctcca cctaagatgt      3000
     ctatcctcaa ggataaggtt gaaaaattga tccagaaggg cgtggtaaga tccagcaaaa      3060
     gttcgtactc ttccccggca tttttggtcc ccaaaggaga agaagactcc agaatggtta      3120
     tagactaccg taaattaaac cagaaaattg acattgaggc cgtgcctctt ccaaacataa      3180
     atacggcatt ttcatggttc tctaaggctc gttattttac cgtccttgat ctcaactcag      3240
     catactttca agtgccgctc agtgaaaggt caaaaccgtt cactggtttc tgcacccctt      3300
     ggggtctttt tgagttccag agagtgcctt ttggcttggc gactggggct caagttctta      3360
     ctcgcttagg taacttgctc ttctccgatt taatgtttaa tggattggta aatttcatcg      3420
     atgattacgt gttgtacgcc gagactctcg aagagatgct tagactgcta gagatcgtat      3480
     tacaaaggtt caaagaggcg ggtatcactg taaatcctga gaaacttcag gtggcggtat      3540
     ccaaaatcgc atacctaggt catcttatct ctgggcaggg cattgaaatt gacccctcac      3600
     gtattcaatc gttgaaagat ttccctcccc ctcgtgacgc taaaggagtt gctcgcttta      3660
     tagggatggc gaacttttat aataagttcg ttccgaactt tgccgaaaga gcggctccgc      3720
     ttaacacctt acgccgaaaa ggtgtgaaat ttgaatggaa agaggaacaa caacaagcat      3780
     tcgaagatct caagtcttgt ttgattaatc cgccgattct ggcgaagcct gattttactc      3840
     ggccatttat tctacagacc gatggctcca gcgttgctct aggtgcggta cttctgcagg      3900
     aagttgacgg gtgccgtatg cccgtggctt acggatctcg atctctcacc cctcaagagc      3960
     ggcattattg tgcatatgaa attgagtgtc ttggtgtact cttcggactt gagaaattcc      4020
     gcgtgtattt ggagcaccaa gagtttcagt tagaatgtga taaccaagct ctctcttggt      4080
     tgttagggca cccacgtcaa ttaggaaaaa ttggtcgttg ggtcatgcgt atagcagctt      4140
     tcaaattcaa agtaaagcac atcaagggca gtgagaacat tttcgctgat gccctctcta      4200
     gaatgttcta tcccgaagat attgacaacg aagtagctgg acctgtgttt agtttggccg      4260
     tcaacgtgcc tcagtttcct atgggtcatt ctagtatttt ggagcatcaa ctcaaggacg      4320
     atgcactcag taccaaaatt gaggcactta agagaggcga aaccctacca ttgtattctc      4380
     tcaggaaagg agtactttgt tgtagttcgg ctcgtgacaa agcaccgaaa atcgtactac      4440
     ctggtgagtt agtccccatg gttttccagt attaccacca atctcctttt ggtggacatc      4500
     tagggatgta taaaaccgta caccgaattc gccagcattt catttacccg ggcatgaatg      4560
     cggatattaa gagccgcgtg ggccagtgtg agacctgcgc tctgtcaaaa cccgcccaga      4620
     attctttact gggaaagttg gcgtctgaag ttccaacccg tccttacgaa aagatttctg      4680
     ctgattatgt tggtcccttg gttcggagta agcaaggaaa ccagtacatt cttgttgctg      4740
     tggactattt ttcgaagttt tgttggctca tgccggtgcg ccgagctacc tccgaagcag      4800
     ctataaagga gttgagtaag gtctttcaag gttttagtgt cccatctaag ctcgtgactg      4860
     ataatggaaa gcattttgtc tccaatgctt ttaacaattt ttgcttttcc ctgggtattc      4920
     aacatatcaa gacatcccca tattatccac gtgctaatct ggcagaaaga gtgaatagga      4980
     atctaaagtc ggcgttgatt gcttatcact cacgtgatca gactttatgg gatactaact      5040
     tgtgctggtt gcagcttgcc ttcaattgtg ctcgtcatga agcccaccgt catacccctt      5100
     ttgaattgct tttctcgttc cctcccaaac atcctctttc acttctgtgg cgtatcgagg      5160
     atcttttgcc agatgacacc aagaaggtcc ccgcaaagtg gaatgaagtt aaacgtaatt      5220
     tgttgaaagc tcatggtaag gtggaagtga agtacaatct taagcgaaga gaacaccatt      5280
     ttactgttgg tgatctagtc ttagtgaaaa gcttcaacaa aagtgataaa gcgcgtaagg      5340
     tcatggccaa actttgtaat cgttggtctg gcccttacag gattctacac tttaataagt      5400
     ctgttactgc tagcctcggc gatcccaagt ctggcagatt tcgccggact gctcatgtga      5460
     gccatttaaa gaaataccct aacggggtct agtattttca ctgaacgtgt tatctttgtc      5520
     ataagtgtat gcagacattc ttgcatgttc ggtaaacctt taccctcctc gtcttgtttt      5580
     gtaaatattc ttaaagtgta catagtcttt caaatttatt gtacatattt tgtcgtgtac      5640
     tttcacatac ttatcttcta agtgttttga tatttggggg gtttgttttt ttgcggccat      5700
     tgtgcatttt accgtggatc gtttcccctc ccagtttatt ttcttagtga agtctacgat      5760
     gggtcacgct tttggtcggc ggtcgtttaa cctcgtaaag tcaatctctg aattgttttc      5820
     cttcatcact ggtggtttgt ctttttcttt cttcttatct cctgctcctt ttctctcctg      5880
     ctccctttct cttctctatt ttttttgttt tctatcctct acgtgttgac gtgctttggg      5940
     atgcatgtga caccgttttg cattttgggg ctcttttgct cagcaaggag ttgcgactag      6000
     tgcctttggt atgtcatgtc atcttgtatc gtagttttag tcctatattc ctgtgtgaat      6060
     gagtgtgtgt atgtgtattt ccctctaggt ttaatttttt ttttttttgg tatagttttg      6120
     tatacctttc tatttattta ttgttgtagt tcccgttgtc aatgtacttt gctgtcatcg      6180
     ccggccgcac atttccttcg ggtgtgtcta atgtgcagga cgtgttggtt tgttcttata      6240
     tcctattttg gtttacgctt ttcgcattat cctacccgga tatgtctgat gctgaatcga      6300
     gttaaccaat ccttggtgtc tgttagtgtt ggttttggga tcgtacattt tccttgcgga      6360
     tttgtctagt gtacgttcct caaattgatt ttttttgtct tttctcgatt agcttctaac      6420
     cgtggcgtct tcctttggga atgtctgact ctaacggttc gggagtgttt tgtttctctt      6480
     atgtatgcca atgcttggcg ttgctctgtt aactttgtct tgttttgttc caaaccgtgg      6540
     cgtctccctc tgggagtgtc tgacgctaaa gggtttgcta ttgtgtctct tgggtatatc      6600
     attatgtttg acgttcttcc attgatttct tctggtgcta gtcacaactt ccttagcttc      6660
     tcggtgcttt cttactgcgg gtagctttct ttccgacccc agggtcgttc ttaagggggg      6720
     gagtt                                                                  6725
//
ID   Gypsy-27_TrVa-LTR repbase;    DNA;    INV; 802 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-27_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-802
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 331-331 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 802 BP; 104 A; 211 C; 137 G; 350 T; 0 other;
     tgtgccgttt tacgtcacgt tgtctccctt accttattct ctcgtgcctt ctgcctgggg        60
     catccccttc cgctcaccct tttcgcactg tctcactcac ttctctccct ttctctctca       120
     cactctctct tttcctctct cttgctagct cactctgtct ctcgctcaat tctgttttct       180
     caccttttcc tcattctccc tgtcgcctgt ttcctttcgg tgttggggct ttcccctgac       240
     cacccaccca tttccttccg ctaccaaccg tcttggctct gctgactctg gaggggggaa       300
     ttttcgatcc tactgttact gggtactctt ttggggattg tcactttgat cgtcggacga       360
     gcatcacgta tttttttctc tctgtgtttt tgtggaatat tactgtctac atgttttttg       420
     ctaatttgct cttagttgtt ttgtgtctga atttaatgtg tgtgtgtttt tctttatttt       480
     tgttcttctg accgttacgt acggctacac gtcccttttt tttttctttt taggtgtccg       540
     taaaatattg gttttgttgg ttgatcgttg gatttgttcc ccgttatttt tcatacatcc       600
     acgagatctt gtgtcagttg ttattttttt cccgttattt tcacctccgc gcaacttggt       660
     ctacatttac ttttgttttt ttgttttctc atcgttggat ttttaattac catgtttttg       720
     ttttgtctct tgtgtccgtg tgtcctctct aactcttgac ttccaacctt ccatctacga       780
     tcaagagagg accacgggct ca                                                802
//
ID   Gypsy-28-I_NVi repbase;    DNA;    INV; 4636 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-28-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4636
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 992-992 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           127..4602
FT                 /product="Gypsy-28-I_NVi_1p"
FT                 /translation="MSDVEEPSTALIAAVTKALADALRIAIPQVTTPVTNQ
FT                 PESTSQVQPKAPPFKYQEYRSSDGTTVNDYFKRFEWALQLSKISEEEYGNF
FT                 ARVYMGAELNNALKILVAPDTPESRTYQQIRTVLIAHFDVKKNKYAESVKF
FT                 RQIVQLQNESIANFSLRLKQGATFCEYDTFLDRMLIEQLLHGLTDRDMRDE
FT                 IIAKKPTTFKDAYEIAHTLESTRQTADEVTSTSNKIHALSYSTTHFKHKRN
FT                 ASHTSRSASRKQDHGEQQGQYACYGCGERHKRSECPFRTSECHKCKKRGHI
FT                 AKVCRASSSLSTSQIQSSEEPAQQIDTLKCFNAVEEIHVIDKSCGKKILQV
FT                 LIEGHKLNMELDSGAPYGFIGSDTLRNLKPNFQLQPTSKKFMSYSQHRLNC
FT                 IGTCSVNVSFGSTSRQLPVYVIQGSYDSLFGREWIAQFSHEIDWTELFSPI
FT                 KVNALSTLPPSLTRDQQAQLDQLLTRYAEVFSETAGKLTGPPVKVHFKPGT
FT                 SPVFARAQDIAYALRDKYSKAVDAKLASGFYKKVDFSEWASPTHVVIKKNG
FT                 DIRITGNYKPTLNPRIIIDECPIPKPSDIFNKVKGAKIYAHLDITDAYTHL
FT                 PADDEYSHALTLNTPTHGLVRPTRAVYGAANVPAVWQRRLKEILQGLKNVE
FT                 NFFDDIIVWAESFEELLIILETCLIRLLENGVRLNRRKCVFATNSVEFLGH
FT                 KLDTQGIHKSDSHIKAIRDAPKPSTPQELELFIGKATYYNSFIPDLATKAR
FT                 PLRDMLLTSSFQWSPTADKAYEELKNILISPQVLMPYDPSLPLILATDASK
FT                 VGLGAVLSHKLSNGIERPIAYASRTLTATEQRYPQIDKEALAIVWACQKFF
FT                 NYLYARHFTLFTDHKPLTQIFHPEKSLPILCISRMANYADYLAHFNYDIKF
FT                 KPTKANANADYCSRAPLPSTVDAIEEITELDSFDTFIINQINQFPVRAEQI
FT                 AKETRKDSNLGKIIQLLEAGQDLSRHGYKAPESSYGLSSNCLIFEHRVVIP
FT                 SSLRQAILNDIHSAHLGIVKMKGLARSFVYWPGIDADIELIAKSCAECAKH
FT                 AHAPPKFNTHHWEYPKGPWERIHIDYAGPVAGKMLLVITDAYSKWLEVKVT
FT                 SSSTSTATIDILDQLFATYGVPSIVVSDNGRQFVSDEFETFLKISGVKYHK
FT                 LTAPYHPSTNGQAEKCVGTTKRALLKMDTTQGSLQRNLNEFLRQYRKAPHS
FT                 TTGQPPALLFLKRNIRTRLDLVRPEPINEKISEKHQADFINTYREFKPLEH
FT                 VYFLSGNPKLDKWIPGQINSRLGDLHYEISYMDKKYKRHVDQIRAFTKKSE
FT                 EGEETRKKPERVTFFEDKIGANLTTLSTTSTRRRTRFYKNNVTPRSMSAQQ
FT                 EVNTEVITPSYKAPSTSQTVSFKESPTIQATSTQESLISKSLPTSSVEMST
FT                 TTTEAQSSTSHASLPPTVNDSFQNLSTSATLQEEFPFQTQDQRTERLPQEQ
FT                 SFFIPNTPPIRRSSRIRKSRTIYSPP*"
XX
SQ   Sequence 4636 BP; 1467 A; 997 C; 815 G; 1357 T; 0 other;
     ttttggtgtc agaattggtt tcgaaaatac gccaattact tgattttcta tattctacta        60
     caataacacg cagagagaaa tagtgaaaag tgcatatttt cattacaaat caacgtcaac       120
     ataaccatgt cggacgtaga ggaaccttct actgcattga ttgctgctgt gacgaaggcg       180
     ttggcggatg ctctgaggat tgctattcca caagttacca ctcctgttac aaaccagcct       240
     gaatctactt ctcaagttca acccaaagct cctccgttca agtatcaaga atatcgttcg       300
     tccgacggaa cgacagtcaa cgattatttc aagagattcg agtgggcatt acaactgagt       360
     aaaatttcgg aagaagaata cggtaatttc gctcgagtat atatgggcgc agaacttaat       420
     aatgctctga aaattcttgt tgctcctgat acaccagaaa gtcgtacgta tcaacaaatt       480
     cgcactgttt taattgcaca tttcgacgtc aagaaaaata aatatgcaga aagtgttaag       540
     ttccgacaaa ttgtacagct acagaatgaa tccattgcta atttctcact acgattaaag       600
     caaggagcta cgttctgcga atacgacaca tttctcgaca ggatgctgat tgagcagctc       660
     ctacatggtc tcaccgatcg tgatatgcgc gacgaaataa tcgccaagaa acctactaca       720
     ttcaaagacg cttacgaaat agcacataca ttggagtcaa ctcgtcaaac agcggatgag       780
     gttacctcta cttctaataa gatacatgca ctatcttatt caacgacgca tttcaagcat       840
     aaacggaatg cttcacatac atcgcgcagt gcttctcgga agcaagatca tggtgaacaa       900
     caaggtcagt acgcttgtta tggatgcgga gaacgtcaca aacgcagtga gtgtccattt       960
     cgtacttctg agtgtcataa gtgcaaaaaa cgtgggcaca tagcgaaagt ttgcagagct      1020
     tcatcttcgc tttctacttc tcaaatacaa agttctgaag agcctgcaca acaaatagat      1080
     acattgaaat gtttcaacgc agtcgaagaa atccacgtta ttgataagtc ttgtggtaag      1140
     aaaatacttc aagtgctcat tgaaggccac aaattaaata tggaattaga ttctggtgca      1200
     ccatatggtt tcattggtag cgatacactt cgtaacctca aacctaattt tcaattgcag      1260
     ccaacttcta agaaattcat gagttactcg caacatcgcc tcaactgcat cggtacttgc      1320
     tctgttaatg tctcatttgg ttctacatct cgtcaacttc cggtctacgt tattcaaggc      1380
     tcttacgatt ccttatttgg tcgtgaatgg atcgcacaat tcagtcacga aattgattgg      1440
     accgaactct tttctccaat caaggttaat gccctttcta ctcttccacc ttcattaact      1500
     cgtgatcaac aagcacagct ggatcaactt ttgacaaggt acgctgaagt tttcagtgaa      1560
     acagctggaa aacttactgg acctccagtt aaggtacatt ttaaacctgg aacttctcct      1620
     gtttttgctc gtgctcaaga tatagcatat gcgttacgcg acaaatattc taaagcagtt      1680
     gacgctaaac ttgcgtctgg attttacaaa aaagttgatt tttccgagtg ggcttcgcct      1740
     acacacgtcg ttattaaaaa aaatggtgat attcgtataa ctggcaatta taaacctacg      1800
     ttgaatccac gtataataat agatgaatgt cctattccaa aacctagtga cattttcaac      1860
     aaagtaaaag gagccaaaat ttacgcacat cttgatatta cagatgctta tactcatctt      1920
     cctgctgacg acgagtacag ccatgcttta accctcaata ctcctacaca tgggttggtt      1980
     cgtcctacac gagctgttta cggcgcagct aacgttcctg cagtttggca acgtcgatta      2040
     aaagaaatct tacaaggtct aaaaaacgtt gaaaattttt tcgacgacat cattgtatgg      2100
     gctgaaagtt tcgaagaatt gttgattatt ctggaaacgt gtttgatccg tcttcttgaa      2160
     aatggtgttc gtctcaatcg acgtaaatgt gttttcgcta caaattctgt agaatttttg      2220
     ggtcataaac tagatacaca aggcattcat aaatctgatt ctcacatcaa ggcaattcgt      2280
     gatgcaccta aaccttctac acctcaagaa ttagaattgt ttattggtaa agctacgtac      2340
     tacaattcat tcattcctga cttagctaca aaagctcgac cacttcggga catgcttctt      2400
     acatcatctt ttcaatggtc gccaactgct gataaagcat acgaagagct taaaaatatt      2460
     ctcatttctc ctcaagtttt gatgccatac gacccatcct tacctctcat actcgccact      2520
     gatgcaagca aagtaggact cggagctgtt ttatcacata aacttagcaa cggaatcgaa      2580
     aggccaattg cttatgcgag ccgtacatta actgctactg aacaacgcta tcctcaaatc      2640
     gacaaggaag ctttagctat tgtatgggct tgtcaaaaat ttttcaatta tttatacgct      2700
     cgtcatttta cgctgtttac agatcacaag ccattgacac agatttttca tcctgaaaaa      2760
     tcacttccta ttctttgtat cagtcgaatg gctaattatg ctgattactt agctcatttc      2820
     aactacgata ttaagttcaa gccaactaaa gctaatgcaa atgcagatta ttgttcacgt      2880
     gctccacttc cttcaacggt tgacgctatt gaagaaatta cagaacttga ttcttttgac      2940
     acatttatta tcaaccagat caatcagttt cctgtacgag cagagcagat tgcgaaggaa      3000
     actcgtaaag attctaacct aggtaaaatt attcaactac tcgaagctgg tcaagatcta      3060
     tctcgtcatg gatacaaagc gcctgagtct tcttatggtc tatcttcaaa ttgcttgatt      3120
     tttgaacatc gagttgtgat tccatcgtct cttcgtcaag caattttaaa cgacattcat      3180
     tcggcgcatt tgggcattgt caaaatgaaa ggtttggcac gatcatttgt ttactggcca      3240
     ggaattgatg cagatattga acttattgct aaatcttgtg ctgagtgtgc caagcatgct      3300
     catgctcctc ctaaattcaa cacacatcat tgggaatatc ctaaaggccc atgggaacgt      3360
     atccatatag actacgctgg accagtagct ggtaagatgc ttctagttat cactgatgct      3420
     tatagtaaat ggcttgaagt caaggtcaca agttccagta ctagcactgc tacaatcgat      3480
     attctcgatc agttattcgc tacttatggt gtacctagca ttgttgtttc agataatggc      3540
     cgtcaatttg tttcagatga gtttgaaaca tttctcaaga taagtggagt gaaatatcac      3600
     aaacttactg ctccttatca cccttcgaca aatggtcaag cagaaaaatg cgtgggtaca      3660
     acaaaaagag ccttacttaa aatggatacg acacaaggtt ctttgcaacg gaacttgaat      3720
     gagttcttga gacaatatag aaaagctcct cattcaacta ctggacaacc acctgcttta      3780
     ttatttttaa aacgaaacat tcgcacacga ttagatcttg ttcgacccga acctatcaac      3840
     gagaagattt ctgagaaaca tcaagctgat tttatcaata cgtaccgaga atttaaacca      3900
     cttgaacatg tttattttct ttccggtaat ccaaaattag ataaatggat tccaggacaa      3960
     attaattctc gtctaggaga tctgcattat gaaatcagtt acatggataa aaagtataaa      4020
     cgacacgtcg atcaaattcg tgcttttaca aagaaatcag aagaagggga agaaacaaga      4080
     aagaaaccag aaagagtaac attttttgaa gataaaattg gtgctaattt gacaacgctt      4140
     tccaccacaa gcacacgacg tcgtactcga ttttacaaaa ataacgtaac tccaagatct      4200
     atgagtgcac aacaagaagt aaatactgaa gtaattacac catcatataa ggctccttcg      4260
     acttctcaga ctgtgtcgtt taaagaatca ccgactatac aagctacgtc aactcaagaa      4320
     tctttaattt caaaatcttt accaacttca agtgttgaga tgtctacgac tacaacggaa      4380
     gctcaatcct caacatctca cgcatctctt ccacctactg taaatgattc attccaaaat      4440
     ctatctacct ctgcaactct tcaagaagaa tttccgtttc aaactcaaga tcaacgtact      4500
     gaacgtttac ctcaagaaca gtcatttttc attccaaaca caccgccgat tcgacgatca      4560
     tctcggatac gcaaatcacg aactatttac tctccaccat gataattcaa gaaatcttta      4620
     taaaggaggg aggaaa                                                      4636
//
ID   Gypsy-28-LTR_NVi repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.05, Created)
DT   11-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-155
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 993-993 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 155 BP; 50 A; 24 C; 13 G; 68 T; 0 other;
     tgtagtatat ttcaattaac gttcttttta agttctattg tttttcatgc aacttcatat        60
     tattgattgt aaataataac tgtcattcaa aataaaccta tctttgagta aacatctttg       120
     cactttctct aagtttactc tatacatata caata                                  155
//
ID   Gypsy-280_AA-I repbase;    DNA;    INV; 4402 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-280_AA_;
KW   Gypsy-280_AA-LTR; Gypsy-280_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4402
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2662-2662 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3348-3806] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4388
FT                 /product="Gypsy-280_AA-I_1p"
FT                 /translation="MSLSGGEPSANLGGQDVFRLILQQNQQMVEQNARLMA
FT                 MMERFNNLEAPARTASGPEFIIESLASNIREFCYDPENGLVFDRWYQKYED
FT                 LFLKDGVNLDDSAKVRLLLRSLSVNVHDKYVNFLLPKHYREFSFADTVSKL
FT                 KQLFGMRTTLFSKRYQCFQITKKAEEDYVTYAATVNKRCEDFELNRITADQ
FT                 FKSLIFICGLRSPKEADIRTRLLSKLEADGEGECKLDTLINECQRLQNLKH
FT                 DTALIEQKSSIAATVCAVKQKKQQSNQSAQSTKDNKHSSVPRTPCWQCGGM
FT                 HFVRDCSFANHTCKSCNKVGHKEGYCSCISVKPNPGFKKHKGKKKSSVNGI
FT                 FAVNQINSEIRRKFVNVNICGVKIKLQFDTASDITLISRQTWEKLGSPDLK
FT                 PTTSEAKTASGKPLNLVGELTCSIKLGNIIKDGTCFVTNHPNLNLFGLDWI
FT                 ELFELWSKPLSAICRKVQATQSPIQNYKEAFPNVFKDTLGHCKKTKVKLYL
FT                 KQDARPVYKPKRPVPFTSITKVDAELDRLEQAEIITPVDFSPWAAPIVTVK
FT                 KPNGKVRICADYSTGLNAALEANNYPLPVPDDIFTKLNGCKFFSIIDLSDA
FT                 YLQVEVDDDSKQLLTINTHRGLYRFNRLAPGVKSAPGAFQQLMNGMIADLE
FT                 GVESFLDDIIVFSKTEVEHHQRLEALFKRLEEYGFHLREEKCSVLQREIKY
FT                 LGHIVDENGLRPDPSKIEAISKMPAPTDITSLRSFLGAVNYYSKFVKKMHH
FT                 LRRPLDALLKKDVQFVWSSACQNSFEKIKEILQSDLLLTHYDPKQEIIIAA
FT                 DASKSGIGAVAMHRFPDGNLKAIAHASRTLTQAEAGYSQIEKEGLALVFGV
FT                 TKFHRMILGRKFTLQTDHQPLLRIFGSKKGIPLHTANRLQRWALTLLCYDF
FT                 EIEYVSTTQFGYADVLSRLINNYTKPDEDFIIAAVQLEEDIEVPLDEAVGI
FT                 LPITFNMIRKETIKCPVLQQVVRLNQQGWPSKANSIEDEQVRQFFPYRETL
FT                 TVVKGCVMMADRLVIPYNFRTRILKQLHRGHPGIERMKAIARSHVFWPKID
FT                 NAIEAFVRECNNCASHSKTPRKVPLQSWPQTASPWERIHIDFAGPFFDQYF
FT                 LVVVDAHSKWPEVQIVRSPTTSSVTEFLDELFSRFGVPSTVVSDNGSQFTS
FT                 EQFAAFCKSNGIQHLRTAPYHPQSNGQAERFVDTLKRSLLKINEGEKIAKT
FT                 LQVFLQTYRSTPSRILQGKSPAELILGRKMRTALSLLQPTQRIPTVVNQQQ
FT                 NDQFNKKHGVVSRSFQAGDKIYAKVYSANKWTWSAGVVIEAFGHVNYNVLL
FT                 DNQHGRRKLIRSHANQLKWREVSSSVTDSSRSPLSILVDMFGLQSKPIPVQ
FT                 DTIPVETAGNQEISDISDVRLQATNEDDHGPEANQQESESIPSVTPEVRIR
FT                 PKRTIRMPSRFEPYWVLRK"
XX
SQ   Sequence 4402 BP; 1352 A; 1017 C; 974 G; 1056 T; 3 other;
     attagctcta ataaagatta ttttagaata taatattttg gcgacgagtt attaaagaat        60
     ccactctgga atctcggaaa agaagaagaa tgtctttatc gggaggagaa ccatcagcaa       120
     acctcggagg tcaagatgtt ttccggctca ttctccagca aaatcagcag atggtggaac       180
     agaatgctcg tctaatggcc atgatggaac gtttcaacaa cctagaagct ccagccagga       240
     cagcaagcgg ccccgaattc atcattgaat ccctagcgtc aaacatccgt gagttttgct       300
     acgatcccga gaacggctta gtattcgacc gatggtacca aaaatatgaa gaccttttcc       360
     tgaaggatgg cgttaatctg gatgattcag cgaaggtccg tctcctatta agaagcctca       420
     gcgtgaacgt gcatgacaag tacgtgaatt tcctgttacc gaagcattac cgtgagtttt       480
     cgtttgcgga caccgtctcc aagttgaagc aactgttcgg aatgagaacc acgttattca       540
     gcaagcggta tcaatgtttt caaataacga agaaagcgga agaggattac gtgacctatg       600
     cagcgacagt caacaaacga tgcgaggatt tcgagttgaa ccgtatcaca gccgatcaat       660
     tcaaatctct cattttcatc tgcggattaa gatcgccgaa ggaagctgac atcagaacca       720
     gattactttc aaaactagaa gcagacggag aaggcgagtg caagttggac accctcatca       780
     acgaatgtca acggttgcag aatttgaaac acgacaccgc cttgatcgag cagaaatcat       840
     caattgcagc aacagtctgt gcagtcaaac agaagaagca acaatcgaac caatctgcgc       900
     aatcgaccaa ggacaacaag cattctagcg ttccaagaac accatgctgg cagtgcggtg       960
     gcatgcactt tgttcgtgat tgctcttttg cgaatcatac ctgcaaatcc tgcaacaaag      1020
     ttgggcataa ggaaggctac tgcagttgca tttctgtgaa gcccaaccca ggattcaaga      1080
     aacacaaagg taagaagaaa tcgagcgtca acggcatatt tgcggttaac cagatcaaca      1140
     gcgaaatcag aagaaagttc gtgaacgtca acatctgcgg cgtgaagatt aaacttcagt      1200
     tcgatacagc atctgatatc accctcattt caagacaaac ctgggagaaa cttggatcac      1260
     cggatttgaa accaacaaca agcgaagcga aaacggcgtc ggggaagcct ttgaatctag      1320
     taggagagct cacctgttcc atcaagcttg gaaacatcat caaagacggc acctgcttcg      1380
     tgacaaatca ccctaatctc aatttgttcg gcctagattg gattgaactt tttgaactat      1440
     ggtctaaacc tctatcagcg atctgtagaa aagtacaagc tacgcagtca ccgatccaga      1500
     actacaaaga agcgtttccg aacgtgttca aggataccct cggacattgt aagaaaacga      1560
     aagtgaaatt gtacctcaaa caagatgcac gtcccgtgta caagccgaaa cgtccagttc      1620
     cgttcacatc catcacgaag gttgacgccg aattggatcg tttggagcaa gcggaaatca      1680
     tcacacccgt agatttttcg ccatgggccg ctccaatcgt tactgtgaag aagcctaatg      1740
     gaaaggtacg catctgtgcc gactattcca ccggattaaa cgcagcgttg gaagcgaaca      1800
     attacccttt accagtaccg gacgacattt tcaccaagct gaacggatgc aagttcttca      1860
     gcatcatcga tttatctgat gcatatcttc aagttgaagt ggatgacgat tcaaaacaac      1920
     tgttaacaat caatacccat cgaggactct atcgtttcaa cagattggcg ccaggtgtga      1980
     agtctgcccc cggagctttt caacaattga tgaacggcat gatagcagac ctcgaaggag      2040
     ttgaatcttt tctggacgac atcattgtat tcagcaaaac agaagtagag catcatcagc      2100
     gtctcgaagc tcttttcaag cgcctggagg agtacggttt tcaccttcgc gaagaaaaat      2160
     gcagcgttct tcaaagggaa atcaaatatc tcggccacat tgttgatgaa aatggactac      2220
     gcccggatcc atcgaagatt gaagcaatct ccaagatgcc tgccccaacc gacattacca      2280
     gtttgcggtc attcctgggt gctgtgaact attattcaaa atttgtgaag aaaatgcacc      2340
     acctacgacg tcctctcgat gcgttactga agaaagatgt ccagttcgtt tggtcctcag      2400
     cgtgtcaaaa ttcgttcgag aagatcaagg aaattctgca atcggatttg ctgctcactc      2460
     actatgatcc gaaacaggaa atcatcatcg ctgcagacgc atcaaaatca ggtatcggcg      2520
     cagttgccat gcatcgtttt ccagatggta acctgaaagc aatcgctcat gcttcccgaa      2580
     cgctgacgca agctgaagcc ggttacagcc aaattgaaaa agaaggttta gcattggttt      2640
     ttggagtaac caaattccat cggatgattc tgggcaggaa gttcacgctg caaaccgacc      2700
     atcaaccctt actgagaatt tttggttcga agaaaggaat acctctgcat accgcaaacc      2760
     gtttgcaacg atgggcgctg actctcttat gctacgactt cgagattgaa tatgtttcaa      2820
     ctacacagtt tggctatgcg gatgtgctat cgaggctgat caacaattac acgaaacctg      2880
     acgaggattt cattattgct gctgttcaac tggaagaaga tattgaagtt ccgttagacg      2940
     aagctgtcgg aatactgcca ataactttca acatgattcg aaaagaaaca atcaagtgtc      3000
     ccgttctgca gcaagtggtc cgtttaaatc agcaaggatg gccatcaaaa gcaaacagta      3060
     tcgaagatga gcaagtacgt caattcttcc cgtatcgtga aactctgact gtngtgaaag      3120
     gatgtgtcat gatggccgat cgtttggtaa taccgtacaa ttttcgtacc cgtattctga      3180
     agcaattaca tcgtggtcat cccggaattg agagaatgaa agccatcgcc cgaagtcacg      3240
     tgttctggcc gaaaatagac aatgctattg aagctttcgt tagagaatgc aacaactgtg      3300
     cctcccattc gaaaacgccn aggaaggttc cgctgcaatc atggcctcaa accgcaagtc      3360
     cttgggaacg aattcatatc gattttgcag gaccgttttt cgatcaatat tttctggttg      3420
     tcgtcgatgc ncattccaaa tggccagagg ttcagatcgt ccgatcgcca actacatcaa      3480
     gtgttactga gtttctggac gaattgtttt cccgttttgg agttccttca actgtggtat      3540
     cggacaacgg atcgcagttc acctcggagc agttcgccgc gttctgtaaa tccaatggaa      3600
     tccaacatct aagaacagca ccgtatcatc cacaatccaa cggccaggcg gagaggtttg      3660
     tcgacacttt gaagagatca ctacttaaaa taaacgaagg ggagaagatt gccaagacac      3720
     tacaggtatt tctacaaacg taccgttcta caccaagtcg tatactgcaa ggaaaatcgc      3780
     cagcagaact aatacttggt cgcaaaatgc gtacagctct cagtttactt caaccaaccc      3840
     aacgcatacc cacagtcgtg aaccagcagc agaacgatca attcaacaaa aagcatggag      3900
     ttgtttcccg ttcgtttcaa gccggagata aaatatatgc caaggtttat tctgcgaaca      3960
     aatggacttg gtcagcagga gtcgtgattg aggcgtttgg acatgtaaac tacaacgtgt      4020
     tactagacaa ccagcatggc agacgcaagc tcattcgatc ccatgcaaac cagctgaagt      4080
     ggcgtgaagt aagcagcagc gttacagatt ccagcagatc accattaagt atcctggttg      4140
     acatgtttgg cctacaatca aaacctatac ccgttcaaga tactattccg gttgaaacag      4200
     ctggaaatca ggaaatatcg gacatttctg atgtacgttt gcaagctacc aacgaagatg      4260
     accatggacc tgaagctaat caacaagaat cagaaagtat accttcagtt actccagagg      4320
     tacgaatccg tccaaagcga acaattagaa tgccgtcaag attcgaaccg tactgggtac      4380
     tccggaaata agaagggaga ga                                               4402
//
ID   Gypsy-280_AA-LTR repbase;    DNA;    INV; 125 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-280_AA_;
KW   Gypsy-280_AA-I; Gypsy-280_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-125
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2663-2663 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 125 BP; 36 A; 30 C; 27 G; 32 T; 0 other;
     tgttatcaca agcaatccag tggtagcatc gtagcagtcc atggcagcca actctgagtt        60
     ggcattctga caagttactc tgaaaagagt gattccatta ccagctcttg tacagaacag       120
     tcgca                                                                   125
//
ID   Gypsy-281_AA-I repbase;    DNA;    INV; 3663 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-281_AA_;
KW   Gypsy-281_AA-LTR; Gypsy-281_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3663
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2664-2664 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3027-3539] - Integrase core
CC   'GCTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1413..3647
FT                 /product="Gypsy-281_AA-I_1p"
FT                 /translation="MHPEREKAAQAEFHAMCEMGICQPSSSSWASPLHCVP
FT                 KKNGEWRFVGDYRRLNKVTVPDRYPVPHVHDLLNRFRGKTVFTTLDLVRAY
FT                 YNIPVEEADVPKTAVITPFGLFEFLRMPFGLCNASQTFQRFMNKLFGDLPF
FT                 VVVFIDDICVASPNEEEHKNNLKVVLERLKENGLVINLEKCTFFASQVEFL
FT                 GYLVNQDGIRPLPSRVEAVSNFTTPTTVKDLRRFLALINVYKRFIPHAVEP
FT                 QEVLRKLIPDNRKNDSRKIAWDDHTQRSFDECKQSLAEAVLLFYPDAEKPL
FT                 ALMVDASNFAAGAVLQQLIDQEWKPLGFFSQKFSASQQNYSTFGRELTATK
FT                 LAVGYFRHYLEGRQFTIFTDHLPLTYALTTDPSSRLPHEERYLRYIAEFTT
FT                 DVQHISGQHNIVADALSRVNVVVAGVDFNAIAKDQIDDPHLKKLLSSTSSS
FT                 LKLAPCRFPDVSVPVYCDVSLDNRIRPYLPERHRTSVMTQLHGMAHPGARA
FT                 TRRLIADRFVWPSMNKDINLFVKTCQQCQRSKINRLTVAPLSSFDVPKARF
FT                 RHIHIDIVGPLQPSKGNRYLLTIIDRFTRWPEAIPLSDMTAPTVAMALYSG
FT                 WIARFGTPDTITSDQGRQFESDLFRELTRLLGVHHIHTTAYHPQANGIVER
FT                 FHRTLKASLMCTNSVDWHDRLPLVLLGLRAAFREDLKCSTADLVYGQALRI
FT                 PGEFYDKSIDRIKPAFLCDTNISDHPKEGNNTIVTPSGHRVRFLV"
XX
SQ   Sequence 3663 BP; 976 A; 944 C; 825 G; 918 T; 0 other;
     ttggtgaccc cgacgtgatt tttcactcga ttgcattgcg gggaaatcgc ggacatttcg        60
     attcgataag tttttgtatc gcgccgattc taacctcaaa atggttgacg aaaataacgg       120
     agccggagct gtcgcagcag gagctgaatt ggcagccgcc gtttctgtaa aactgcctga       180
     tttttggaaa aatgacccca acatgtggtt cgctcaggca gaagcgcagt tccatctggc       240
     ccggatcacc caagacgaga ccaaattctg gcacatcgtc gccaggatcg accagagcgt       300
     catctgtcat atttcggatc tggtcaacac gccgccggtt atcaacaaat atcaagcagt       360
     caaagaccgg ctaatcgcac gatttgcttt atccccacaa gctcggattg agcagctgct       420
     aggatcaagc gatttaggcg atctgcgacc atcgcacctt cttgctcgta tgcaggagat       480
     tgctaccggc ctcaacgtgg atgaaagcat catgaagaca cttttcctgc aacgtatacc       540
     gagtcacgct cgtgcgattt tgtccatcag cgatggcagt ctcaccaaac tggctgaaat       600
     ggccgatcga atgctagact cttccgccac gaacgtttcc agttgttctg ctccaacaac       660
     cggctcatcg cccctcgatt acagcagcct taagggagag atagaagcgt tgacagccga       720
     aattcgccgg ctgaaggcca gaccgaaccg aaaccgaagc cgttcatcat caagaccaag       780
     cacggtagga gaagatacga tttgctggta tcatcgcaaa tatggaggac gagctgaaca       840
     ctgtcgagaa ccgtgcggct tcaatcgtca aaaaaactag atgggcgcct tcctgagtcg       900
     gcacaggtag gcggtgatgg tggaagtcga cgtctcgtag tattcgataa aaccagcagt       960
     accagattcc tcatcgatac gggttccgac gtttctataa tccctgcatc aagaagcgac      1020
     aagcaaagag gaaccatccc cttctcactt cacgcagcca acgggacgaa aatcaacact      1080
     tatgccagca aattcgcttt acgtggcgct tcatcgttgc tgatgtgagt ggagctatca      1140
     tcggtgcaga tcttcttgcg catttcggtt tgctggttga tttgaggcac cgacagctta      1200
     tcgacggaac aactaaactt cgatccatcg gcagtctaac cccggctgtc attcacggtg      1260
     taaaagcggt agattgtcaa cacccatatc gtgacctttt ggctgattat cgcgagatac      1320
     tggttccatc gtcgattcca cgtgaggtga agcacgatgt cacgcatcac atcattacga      1380
     acggcccacc ggtcgcatcg aaatcccgtc gaatgcaccc tgaacgtgaa aaagcagcac      1440
     aagcggaatt tcatgccatg tgtgagatgg ggatctgcca accgtccagt agtagctggg      1500
     ccagtcctct ccactgtgtt ccaaagaaaa acggagagtg gcgattcgtt ggcgactatc      1560
     gtcggctgaa taaagtcacc gttccagaca ggtatccagt cccacatgtc cacgatctgc      1620
     tcaacagatt tcgaggtaag acagtcttca ctacgcttga tttggtcagg gcctactaca      1680
     atataccagt tgaggaagca gacgttccga aaacagcagt cataacaccc ttcggactgt      1740
     tcgaatttct tcgaatgccg tttggacttt gtaatgcaag tcagactttc caacggttta      1800
     tgaacaaact tttcggagat ttgccattcg ttgttgtttt tatcgacgac atttgtgtcg      1860
     catcaccaaa cgaagaagaa cataaaaaca acttaaaagt cgtgctggaa cgtcttaagg      1920
     aaaatggcct tgttatcaat ttagagaaat gtacattttt tgcgtcccaa gttgaatttc      1980
     ttggctacct tgttaaccaa gacggtattc gtccgttacc gtcacgcgtc gaggctgtat      2040
     ccaatttcac cacaccaacg actgtgaaag atctgcgacg atttctcgcc ttgataaatg      2100
     tatacaagcg atttattcca catgcagtgg aacctcaaga agtcctgcga aaacttatcc      2160
     ccgataaccg caaaaacgac tcaagaaaaa tagcatggga cgaccatacg caacgttcgt      2220
     ttgacgaatg taaacagagt cttgcagaag ctgttttatt attctatccc gatgccgaaa      2280
     aaccgttagc actgatggtt gatgcgtcta atttcgccgc tggagctgtt cttcagcagc      2340
     tcatagatca agaatggaaa ccgcttggct tcttttcgca gaagttctca gcaagtcaac      2400
     aaaattactc cacgttcggc agagaactaa cagctacaaa attagccgtg ggatatttca      2460
     gacactatct ggaaggtcgt caattcacga tcttcactga ccatcttccg cttacttatg      2520
     ctctcacaac agaccctagt agtcgattgc ctcacgaaga acgctacctt cgctatattg      2580
     cagaattcac taccgatgtt caacatatta gtggccaaca caatatagta gcagatgctt      2640
     tgtctagagt caatgtagtt gtagctggag tggactttaa tgcgattgcc aaggatcaaa      2700
     tagacgatcc ccacttgaag aagttgcttt cgtcgacttc aagctcgctt aagcttgcac      2760
     cttgtcgctt tccagatgtt tcagtgcctg tttactgtga tgtctcactt gataatcgta      2820
     tccgtcccta tcttccagaa cgtcatcgaa caagcgttat gacacaacta cacggaatgg      2880
     cccatccagg agcacgcgcc accagacggc tcatcgccga tcgatttgtc tggccctcca      2940
     tgaataaaga catcaacctg ttcgtaaaga cttgtcagca gtgtcaacgt tcaaaaatca      3000
     accgactcac ggtagcgcca ctttccagct ttgatgtacc caaagctcga tttcgacaca      3060
     ttcacattga catcgtcggt cctcttcagc cttcaaaggg aaatcgttac ctactgacca      3120
     ttatcgatcg tttcacgcgc tggcctgaag caattccact cagcgacatg acggctccga      3180
     cggttgccat ggctttgtac tctggttgga tagcgcgttt tggaactccg gatacaataa      3240
     caagtgatca aggacggcaa tttgaatcgg acctatttcg ggagctaact aggttgttgg      3300
     gtgtgcatca cattcacaca accgcctatc atccacaggc aaacggaatt gttgagcggt      3360
     tccatcgcac actcaaagcc tcgttgatgt gcaccaattc ggtggattgg cacgaccgct      3420
     tacctctggt gctccttggt ctccgagctg cattccgcga agatttgaaa tgttctacag      3480
     cggatcttgt atacggacag gcactccgaa ttcctggtga attttacgac aaatcaatcg      3540
     accgcatcaa accagccttc ctttgcgata caaacatttc ggaccatccc aaggaaggaa      3600
     acaacaccat agttacacca tctggccacc gtgtccggtt cctggtgtaa ctgggggggc      3660
     ata                                                                    3663
//
ID   Gypsy-281_AA-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-281_AA_;
KW   Gypsy-281_AA-I; Gypsy-281_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-171
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2665-2665 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 171 BP; 48 A; 35 C; 38 G; 50 T; 0 other;
     tgtggagacc catttcgttg gtcaccctat cacctggtgg agtgtagaga aaacgtcagt        60
     tgaagaagaa tcgcaagaat tgtaacgcgt gaaatcgaac ggctaataaa aatagttata       120
     gtttcaatcg tttgccttta ttatcactcg ttctcgtgtc cggttcccac a                171
//
ID   Gypsy-282_AA-I repbase;    DNA;    INV; 7362 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-282_AA_;
KW   Gypsy-282_AA-LTR; Gypsy-282_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7362
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2666-2666 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [6310-6786] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           890..1948
FT                 /product="Gypsy-282_AA-I_2p"
FT                 /translation="MIQLEEDVGQLIRLANNLKKSINTNYRTETLQAKFKY
FT                 AHELYADVEQRLIEFEEEISLTNLNFLIKSSRQAYFEITEIIKRKIKVNDA
FT                 KSGVINITTMATPKVDLKLGTALVQIYDGTSEHLTTFLDAVRLFHSNVEET
FT                 FAGATPAQKNAAEATVVRFVRTRLTGKARQAANENQTLNETLDAVKNHCMS
FT                 KITAENLIAKLAAIKQTDNVTDFCEQVDKIIAQLKSVYLGDNIPEATAQKM
FT                 ATKHGVDALIRGTKNNEARIVLKAGNFTNINDAIQKLQENAQSSPITGETS
FT                 QNIARIMWTSRDGARGRARAHQTQNNRGRCQQHNSGNFHQYNHGNFGHNRG
FT                 SFRQSRGYQR"
FT   CDS           2225..3187
FT                 /product="Gypsy-282_AA-I_3p"
FT                 /translation="MIQLEEDVGQLIRLANNLKKSINTNYRTETLQAKFKY
FT                 AHELYADVEQRLIEFEEEISLTNLNFLIKSSRQAYFEITEIIKRKIKVNDA
FT                 KSGVINITTMATPKVDLKLGTALVQIYDGTSEHLTTFLDAVRLFHSNVEET
FT                 FAGATPAQKNAAEATVVRFVRTRLTGKARQAVNENQTLNETLDAVKNHCMS
FT                 KITAENLIAKLAAIKQTDNVTDFCEQVDKIIAQLKSVYLGDNIPEATAQKM
FT                 ATKHGVDALIRGTKNNEARIVLKAGNFTNINDAIQKLQENAQSSPITGETS
FT                 QNTTRIMWTSRDGARGRARAHQTQNNRGR"
FT   CDS           3598..7125
FT                 /product="Gypsy-282_AA-I_1p"
FT                 /translation="MVDSGSDISVLKANKVKPSQIYRPTNKCNVIGIGNGT
FT                 TSTLGDTLVQIKIYNQNLAQNFHIVDENFPIPTDGILGRDFLAGWKCNIDY
FT                 NTWILSIRTSENTLEIPITNHLRGKYFIPPRCEVLKRLHFGNIEDSVTIAQ
FT                 EIQHGVFCANGIISTNYPYVKIMNTLDETVQIPNDFIPKLVPISNYEVFNI
FT                 NKSANNTHRKQALLNELKLNVTDTKLKGKLENLFEEFSDVFALTDDELTEN
FT                 NFYKQTIHLNDPSPTYIKNYRIPEAQKHEMEIQVRNMLKNKIIQNSVSPYN
FT                 NPILLVPKKSATGDKTWRLVVDFRQLNKKISPDKFPLPRIDEILDQLGRAK
FT                 YFSTLDLKSGFHQIPLSEESKKYTAFSSNSGHYEFNRLPFGLNISPNSFQR
FT                 MMTIALSGLPPETAFLYIDDIIVIGCSINHHIANLKEVFQRLRKYNLKLNP
FT                 HKCNFFKADVTYLGHHISASGIQPDKNKYTVIKNFPVPTNTDETRRFVAFC
FT                 NYYRRFIPNFALITNPLNVLLRKNVPFQWSDACQQAFDSLKRSLLSPNILK
FT                 FPDFRKEFILTTDASNVACGAVLAQLHDGVELPISFASKAFTKGESNKSTI
FT                 EQELTAIHWAVQHFRPYLYGRKFKIRTDHRPLVYLFSMKEPSSKLTRMRLD
FT                 LEEFDFEVEYIKGRSNVVSDALSRIQICTESLKQMYVVTRSIHKRQNSVTH
FT                 PNVQSQKPDQLFVYETVSNEEAFVLPKLSFVHNIDNSLDIVIFNKNYTKGT
FT                 AFGLKIQSNNDNINKIVTIQTIMKEIEKGAPKITNKRNNSYMLAIATNDLI
FT                 FKYIDIQKFKQIGNDILRNTTILLFEKPRLLTSQEQVNNVLNKFHNSPTGG
FT                 HLGINRLYRKVKSMYTWQNMKETISNYVKSCVECKLNKNFPSIKSKLVITS
FT                 TPVKPFDVLSIDTVGPFSLTENGNRYAVTMQCDFTKFVIIVPIPDKSSYTI
FT                 AKAVVQHCILNFGPMKSIKTDQGTEYKGVFDEICKLLNINHTCSTAYHPQT
FT                 IGALERNHRCLNEYLRIFSNESKSDWDEWIPHYCFSYNTTPSADHEYTPFE
FT                 LIFGRKCNDIQFLATQKIDPLYNHDSYNHELRYRLQIAHSKVLQKIVKSKT
FT                 LRTNRMNENIKTTPINIGDLVFLKSENNYKLDQVHSGPYKIIKLTDSNATI
FT                 QKDKKTVEVHKSRLLKL"
XX
SQ   Sequence 7362 BP; 2739 A; 1432 C; 1366 G; 1824 T; 1 other;
     tggctaccaa agtgacaggc taccaaagtg aaaaagtgtg aaaaacagtt gtgaagattt        60
     tgaagtgaag attttgcacc atgacggtga catcgatctt aattataatg ctagcattaa       120
     ttttgatgtg cgcaacagtg gcattaatgc agcaaataat caccgagtgg gctaaaggaa       180
     tggaaaaggc acaatttgcc atattaacga actaactgaa gtgaaataaa acggacaagg       240
     agcgttagaa cagtgtagtt tgagtgaatc agcaacatgg gcactacgga gtccaagaac       300
     acggaaaata aaggtgaccc acaggtccaa gtactcaata gattagaagt acacgaaagt       360
     ttacaccaga aaaacgatat taaactgaac attattctaa tactagtagt actacaacta       420
     ctaatcatgt tttaccgcat gtataaggaa cattcacgga agcaagcttt aaaagctgcg       480
     aagagtgtgt cggctttaaa taaactaagt gaggtttaaa aaaaaaaaag tacaaacagt       540
     gtcgaactcg aaaaacggtc agtttttttt ttcaggcatc tatctcgcct ctaagagata       600
     aacagtgggg cagtagccca taataaagaa agtagccgaa tctaacatga tgaatgaacg       660
     cgagaccctt gcctgaggcc ggcaacagta gcagcgaata gcagcagaaa agtgaatcat       720
     cattaaaagc gagcgtagag gagtgcgcct ccgccgcaag gaacagcaat cgaaccagaa       780
     ttcagcgtcg aggagtgcgc ctccgctaaa cgggtggaat ggttgtaaga taagtaaagg       840
     atttgttttt acttttaatg tttatagata taagattagc aaaatattaa tgatacagct       900
     tgaagaggat gttggtcagt tgattagact tgccaataat ctaaaaaagt ccataaatac       960
     gaattataga accgaaactc ttcaagcaaa atttaaatat gctcatgaac tctacgccga      1020
     tgttgaacaa agacttatag agttcgaaga ggaaatatcg ttaacaaatt tgaactttct      1080
     gattaaatct tcaagacaag catattttga aataaccgaa ataataaaac ggaaaataaa      1140
     agtaaacgac gcgaaatcag gagtcataaa tatcacgaca atggcgactc ctaaagtcga      1200
     tctgaaattg ggcacagccc tagtgcaaat ttacgacggc acatcagaac atttaacaac      1260
     ttttctggac gcagtgaggt tgtttcactc aaacgtagag gaaacatttg cgggggcaac      1320
     ccctgcccag aaaaatgctg ccgaagccac ggtggtgcgg ttcgtaagaa ctcgtttaac      1380
     cggcaaagct cgtcaggccg cgaatgaaaa tcaaaccctt aacgaaactc tagacgctgt      1440
     taaaaatcac tgcatgtcaa aaataacagc agaaaacctc atagctaaac tcgctgcaat      1500
     taaacaaacg gacaacgtga ctgacttttg tgaacaagtc gacaaaatta tcgcgcagct      1560
     aaaatcggtg tatttgggtg acaacatacc tgaagctaca gcgcagaaaa tggccacaaa      1620
     acatggcgta gatgctctca tcaggggcac taagaacaat gaagcacgca ttgttcttaa      1680
     agcaggcaat tttaccaata ttaatgatgc aattcagaaa ttgcaagaaa atgcacaatc      1740
     cagcccaatt actggagaaa caagtcaaaa tatcgctcga ataatgtgga catcaagaga      1800
     tggagctcga ggtcgtgctc gagcccacca aacgcaaaat aatcgcggca gatgtcaaca      1860
     gcacaacagt ggaaatttcc atcagtacaa ccatggaaat tttggtcaca atcgcggaag      1920
     tttccgtcaa agcagaggat atcagcggta gcccataata aagaaagtag ccgaatctaa      1980
     catgatgaat gaacgcgaga cccttgcctg aggccggcaa cagtagcagc gaatagcagc      2040
     agaaaagtga atcatcatta aaagcgagcg tagaggagtg cgcctccgcc gcaaggaaca      2100
     gcaatcgaac cagaattcag cgtcgaggag tgcgcctccg ctaaacgggt ggaatggttg      2160
     taagataagt aaaggatttg tttttacttt taatgtttat agatataaga ttagcaaaat      2220
     attaatgata cagcttgaag aggatgttgg tcagttgatt agacttgcca ataatctaaa      2280
     aaagtccata aatacgaatt atagaaccga aactcttcaa gcaaaattta aatatgctca      2340
     tgaactctac gccgatgttg aacaaagact tatagagttc gaagaggaaa tatcgttaac      2400
     aaatttgaac tttctgatta aatcttcaag acaagcatat tttgaaataa ccgaaataat      2460
     aaaacggaaa ataaaagtaa acgacgcgaa atcaggagtc ataaatatca cgacaatggc      2520
     gactcctaaa gtcgatctga aattgggcac agccctagtg caaatttacg acggcacatc      2580
     agaacattta acaacttttc tggacgcagt gaggttgttt cactcaaacg tagaggaaac      2640
     atttgcgggg gcaacccctg cccagaaaaa tgctgccgaa gccacggtgg tgcggttcgt      2700
     aagaactcgt ttaaccggca aagctcgtca ggccgtgaat gaaaatcaaa cccttaacga      2760
     aactctagac gctgttaaaa atcactgcat gtcaaaaata acagcagaaa acctcatagc      2820
     taaactcgct gcaattaaac aaacggacaa cgtgactgac ttttgtgaac aagtcgacaa      2880
     aattatcgcg cagctaaaat cggtgtattt gggtgacaac atacctgaag ctacagcgca      2940
     gaaaatggcc acaaaacatg gcgtagatgc tctcatcagg ggcactaaga acaatgaagc      3000
     acgcattgtt cttaaagcag gcaattttac caatattaat gatgcaattc agaaattgca      3060
     agaaaatgca caatccagcc caattactgg agaaacaagt caaaatacca ctcgaataat      3120
     gtggacatca agagatggag ctcgaggtcg tgctcgagcc caccaaacgc aaaataatcg      3180
     cggcagatnt caacagcaca acagtggaaa tttccatcag tacaaccatg gaaattttgg      3240
     tcacaatcgc ggaagtttcc gtcaaagcag aggatatcag cgatatccac atcaaagagg      3300
     aggttggtca agtcgtggaa attcatttcc aaatcgtgga tttcctttat caaatcatgg      3360
     aatgtttatt gcccaaagtg caaatgaggg atatcaacaa caactgccaa gttttcagca      3420
     gcaaataccc cctttagtat cgcccgtgaa ctatcagcag ccacaacgcc ctttaggggt      3480
     acaatcaata cagcaacacc ctttaggggt aacgttcggg cagcatacgc aataaatgta      3540
     gctgcctcga atttcgtatg tcttaatatt gatgcatcag aaacaccgtg catcttcatg      3600
     gtggacagtg gatctgatat atcagtctta aaagcaaaca aagttaaacc aagccaaatt      3660
     tatcgaccaa cgaacaaatg caacgtaatc ggtataggga atggaacaac atccactcta      3720
     ggagacactt tagtgcaaat caaaatttat aaccaaaatt tagcccaaaa tttccacatc      3780
     gtggacgaaa atttcccaat tcctaccgat ggaattctcg gtagagattt ccttgcaggt      3840
     tggaaatgca atattgatta taatacctgg atattgtcaa tcagaacttc agaaaacacc      3900
     ctcgaaattc ctataaccaa tcacctgaga ggtaaatact ttattccacc acgatgcgaa      3960
     gtattaaaac gactgcattt tggcaatatt gaggatagcg ttaccatagc acaggaaatt      4020
     caacatggag ttttctgtgc taatggcata attagcacaa attaccctta tgttaaaatc      4080
     atgaacactt tagatgaaac ggtgcaaatt ccaaatgatt ttataccaaa actagtacca      4140
     atctcaaatt acgaagtatt taatataaat aaatcagcaa acaatactca caggaagcaa      4200
     gcactattaa atgaattgaa attgaacgta actgatacaa aactcaaagg caagctcgaa      4260
     aatctttttg aagagttcag tgatgttttc gcattgaccg acgacgaact gacagaaaat      4320
     aatttttaca agcaaacgat acatctaaat gatccgagtc ccacgtatat taaaaattac      4380
     aggattccgg aagcacaaaa gcatgagatg gaaattcaag tccgaaacat gctgaaaaat      4440
     aaaataattc aaaactcagt ttccccgtac aataacccaa tacttctagt accgaaaaag      4500
     tccgctacgg gcgataaaac ttggcgccta gtagtggatt ttcgccaatt aaataaaaaa      4560
     ataagcccag ataaatttcc attgccaagg atagatgaaa tcttagacca actaggacga      4620
     gcgaagtatt tttcgacgct cgaccttaaa tctggatttc atcaaatccc gttaagtgaa      4680
     gaaagcaaaa aatatacagc tttctcatcg aattcagggc actatgaatt taaccgattg      4740
     ccattcgggc tgaatattag cccgaatagc tttcaaagga tgatgacgat tgcattaagc      4800
     ggtcttcctc ccgaaactgc attcctatat atcgatgaca tcattgtcat cgggtgctca      4860
     ataaatcacc atattgccaa tcttaaagaa gtttttcaac gtttgaggaa atacaacctc      4920
     aaacttaacc ctcacaagtg caattttttt aaagcagatg ttacctattt aggccatcat      4980
     atatccgcaa gcggaataca acctgacaaa aataaataca cagtcattaa gaattttcct      5040
     gtaccaacga atacagacga aactcgtcga ttcgttgctt tttgtaatta ttatcgtcgt      5100
     tttataccaa actttgctct tattacaaac ccgctcaatg tacttctaag aaaaaacgta      5160
     ccatttcagt ggagtgatgc ttgtcaacaa gcatttgact cccttaaacg gtctttacta      5220
     tcaccaaata tcctaaaatt tcccgacttt agaaaagaat ttattttaac tacagacgcc      5280
     tcaaatgtag cctgtggagc agttcttgct cagctacatg atggtgttga actacctatt      5340
     tcattcgcca gtaaagcttt tacaaaaggc gaatccaaca aatctacaat cgaacaggag      5400
     ttgaccgcaa tccattgggc ggttcaacat tttcgaccat acctttacgg tcgtaagttt      5460
     aaaataagaa cggaccatag gcctcttgtt tacctattct caatgaagga accttcttcc      5520
     aaactcaccc gaatgcgact ggatttggag gaatttgact tcgaagtgga atatataaaa      5580
     ggaaggtcta acgtagtatc agatgccctt tcgagaattc aaatttgtac tgaatctctc      5640
     aaacagatgt atgtagtaac acgatccata cataaaaggc aaaacagcgt tacacatcct      5700
     aacgttcagt cacaaaagcc tgatcaactt tttgtgtacg aaacagttag taatgaggaa      5760
     gcttttgttc tgccgaaatt aagttttgta cataatatcg ataattcgct agatatagta      5820
     atttttaata aaaattatac taagggaacg gccttcgggc tgaaaatcca aagtaataac      5880
     gacaatataa ataaaatagt aacaatacaa acaataatga aggaaattga aaagggggcc      5940
     ccaaaaataa caaataaaag aaacaattca tacatgctag cgatcgcaac aaacgatctt      6000
     atattcaaat acattgatat tcaaaaattt aaacaaatcg gtaatgatat tctaaggaat      6060
     acgaccatat tattattcga aaaacctagg cttttgacaa gtcaagaaca ggtaaataat      6120
     gtactaaaca agtttcataa ctcgcccaca ggaggacacc taggtattaa ccggttatac      6180
     cgaaaagtga aatccatgta cacgtggcag aatatgaaag aaaccatatc aaactacgtc      6240
     aaatcttgcg tagaatgtaa gcttaataaa aattttcctt caattaaatc taaattagta      6300
     attacatcaa caccagtcaa acctttcgat gttctgtcga tagacactgt cggaccattt      6360
     tcacttactg agaatggaaa tcgttacgct gtaactatgc agtgtgattt tactaaattc      6420
     gtaataatcg ttccgatacc agataaatct tcatacacaa tagcgaaagc agttgtccaa      6480
     cattgcattt taaacttcgg acccatgaaa agtataaaaa ccgatcaagg aacggagtat      6540
     aaaggagtgt ttgacgaaat atgtaagcta ctaaatataa accatacatg ttctaccgca      6600
     tatcatccac agacgatagg agcattagaa agaaaccata ggtgtttaaa cgaataccta      6660
     cggattttct ctaatgaatc caaatcagat tgggatgaat ggataccaca ttactgtttt      6720
     tcatataata ctacaccgag tgcagaccat gaatacacac cctttgagct catttttgga      6780
     agaaagtgca atgacataca atttttggca acccaaaaaa ttgatccact ttataaccat      6840
     gattcataca atcacgaact aagatataga ttacagattg ctcattcaaa agttttgcag      6900
     aaaatagtaa aaagtaaaac actaaggaca aatcgaatga acgaaaacat taaaactaca      6960
     ccaataaata taggagattt agtattctta aaatccgaaa acaactacaa attagatcag      7020
     gtacattcag gaccttataa aataataaag ctaaccgatt caaacgcaac catacaaaaa      7080
     gataagaaaa cagttgaggt acataaatct aggttactaa aattataaaa aaaatatatg      7140
     ctgaagcttt tccaaagggg gaagggaagg attcatagaa aacatacata catatagaca      7200
     tgaatacaac atacattgat acatccaaac aaatagcgaa aagttacaat tttataaaat      7260
     agagaggact cgataaaaag aggaaatgaa aaattataca tccaattttg tgagagacac      7320
     ttgaaatcat ctacaaccaa tcactttccg ttagggggat gg                         7362
//
ID   Gypsy-282_AA-LTR repbase;    DNA;    INV; 490 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-282_AA_;
KW   Gypsy-282_AA-I; Gypsy-282_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-490
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2667-2667 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 490 BP; 150 A; 110 C; 93 G; 137 T; 0 other;
     tgtggcatgt gcatcccaca tgttagcaaa tcccatttcc aaactttaag ggaccactct        60
     agtggcaccc cacaaagaaa atagcaaacg ttttacaatg ccatcgaact gatttatgcg       120
     gcgaacgaat atgagcccat aaagcagttc gatgacttaa agcctgaccc ggcaaaaaat       180
     aggctgggat catattacat tctgaacacg caaacagcgt gtggtcgtca agcgcaattc       240
     ggtttggcgc aattagcctt ctccgtatct ctctctctct gagcattctc tttttcggtg       300
     tcgatcactg attggtgatc aaatacataa caatacataa gtgctttcaa gtgtctccga       360
     actaaataag tgtcagaata attttggata actgaataaa tcaattctgt cttgaccctc       420
     aaaccgagag gttcgtttgc cattttaatt atcgaggatg atgacaacca aaaaggagat       480
     tttctctaca                                                              490
//
ID   Gypsy-283_AA-I repbase;    DNA;    INV; 6010 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-283_AA_;
KW   Gypsy-283_AA-LTR; Gypsy-283_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6010
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2668-2668 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5037-5510] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1412..3106
FT                 /product="Gypsy-283_AA-I_1p"
FT                 /translation="MNQIIIEFITFSLFHRAGLDCRIKPFQTNVESSQLPV
FT                 AWAKWKRDLEAYFNSEKIDSQYDRRSKLLYLGGSDLRDIYDNLPESSHISH
FT                 VLSDPPYYDAAIAKLDSHFEPFRRRTYERHQFRQIAQKAAERFSDFVLRLR
FT                 TQVKRCEYEKPDEMILDQIVEKCVSGKLRQKMLKKDMTLDEVEAIGTSMEE
FT                 SEKKLMEFETTKVTEDVNRVSGKTTTNLSDRERNFRQRGFKREFNQVYRPP
FT                 QRKFFGNRSEPVCFACGRRGHVIGASFCPAKQATCLNCKRVGHFARQCRKR
FT                 PNGDPQPEPAAKRVRVVQDTDTENNKESDYVFYAMGNNTFSFSVGGVEIPM
FT                 VIDSGAAANIITQSTWTEMKRQGAVVQNMTTQIDRSLTCYGSDEPMEMVGC
FT                 FTASVAGGGHQTEAQFYVAKKGQQCLLGDETAKLLRVLKVGFDVGRISGDS
FT                 TMEFPKMKNVVVEIPVDQNVQPVRQSYRRVPYALEDKVEEKLDMLLAQGII
FT                 ERVQEPSPWVSPLVPVLKDSGDVRLCIDMRRANKAVLREAHPLPPERKKIT
FT                 TEYQIEVFHTRQFPILTT"
FT   CDS           3723..5990
FT                 /product="Gypsy-283_AA-I_2p"
FT                 /translation="MFGVSCAPEIFQKTMETILAGLEGIIIYLDDIVVFGT
FT                 TKDEHDERLRNLLKRLEQYGVLLNEKKCVYGVKEIEFLGHVLNAEGVKPTE
FT                 NRIVAINRFREPKTVSELRSFLGLVTYVGRFVPNLAEKTEPLRKLLRAASV
FT                 FRWKPEHSVAFQQIKQAVCNIGYLGFFNRVNRTKLVTDASPEGLGAVLLQE
FT                 NEEGETRIIAFASKALTDLERKYFQTEREALAIVWAVEKFSLYLLGTKFKL
FT                 ITDCKALKYLFSPRSRPCPRIERWVLRLQAYDYEISYEPGSSNLADSLSRL
FT                 SVCSPKAFDMETDAYIRQLIDHSVPEAVVLNDVIEATKNDKNLQELMQALE
FT                 TDIWSESIRGYKQFKTELHTAAGIVMRGDRLVIPELLRTQIIACAHDGHPG
FT                 MTVMKRRLRQKVWWLRMDHQVETYVKSCNLCTMVSSVGAPEPMQRTRMPTK
FT                 AWSEVAIDFLGPLPNGYSLLVLIDYFSRFVEVIAMKSTTAELTVKALFETF
FT                 SRFGIPNILRSDHGPQFISETMRKFCKEFGIEQQKTTPYWPQANGEVERMN
FT                 NTILKRLRISQETQGADWKWDLRNFLLMYNSTPHTTTGVAPSLLMFGRILR
FT                 DKLPSVTGETGQMTEEIRDRDWSTKLQSAELTNQRRCARKSTLMVGDVVIA
FT                 KRTTKDHKLSSNFGSEIFDVIRRSGSTAEIRSRSSGKTYNRNVSHLKQIVL
FT                 KTNDNVSANQQEEDTDVSVDVVPQESDDQIINEKSRERREPRPPRYFKDYV
FT                 MKVDY"
XX
SQ   Sequence 6010 BP; 1842 A; 1069 C; 1458 G; 1639 T; 2 other;
     ttggcgacga ggagaaaatg taagtttttt tttgatattt tataacttga cacgattttt        60
     gctatggagt ttctttcgac aacttacatc attcatctgc gggcggttgg tgttggggct       120
     cgtactcagc catccggatg tttttttttc ttggcaactg ttgccgagga ataggttatg       180
     ttgtgctaaa taggatggca cacttagttt tgtctgtgat gttatactga ttcttgtcta       240
     tgaaaaacaa gttaattgtt tattggaagg ctgtatgtgc tggcggaaat tcattattat       300
     tgatgataat ttaatagaat agtggttgcg attagtggtt tggtttgcgt tacatgaagg       360
     gttacggagt gatggagtca aactgtgagt tgttttgttt aataaataaa ttatattatt       420
     tctgattatc ctacattttg ttttatttat tgagattgga attagggtga tgactcatat       480
     aatgtgcaaa caaacaaacc acaaccaata ttgttgatta tcgacgatga tagtgtttat       540
     gaataatgga gaaatagcca ctgatcgcat ataaggcgga tctacctgct gatgacaaaa       600
     taacaatatt aactgattca tcgaaagtga gttgatttgt attttctttt tttttttttc       660
     gttcgaaaat gattttggtg acgggttttg tgcttgattg agagcggaat cgctgaaggt       720
     ggcaataaat gtcatgtttt tttttatcgt gaatagtaga tatcgttgat agttaaaacg       780
     aagtggcggg atcgccgtaa atataagaag gggcgggatc gccgtaaaac gaagcggggc       840
     gggatcgccg taaatataag aaggggcgga atcgtcggcg ggttcgcgna acatgaatgg       900
     cgggttcgcc gaaaatggca gaatggcgga atcgccgtcg ctgcgggttc gcagtgatca       960
     tgaattggcg ggttcgccat aagcggaata aatggcgcaa tcgccattaa ttgaaatact      1020
     ttagcgataa tgtaaaatac attgaaacca gtgcgggttc gccatactca cgaataggcg      1080
     ggttcgccat aaaccgaata aatggcggaa ccgccttaag ctataatagt ttaccggaaa      1140
     tggaaaagac ggcggatacg ccatgcgttg aaacgactgc gggttcgcaa cggtcacgaa      1200
     taggcgggtt cgccacaaaa cgaataattg gcggaatcgc ctcaagttga aatagtgatg      1260
     ggttcaaatt taaccaatat attatttgat tcataaaatc tgatttgatt tgatcaacaa      1320
     aatgagtttg gtttagatat gatgaatgtt gcttggaaaa ttataaattt taagccgcag      1380
     agatgaatga tgttagttgt tctgaattgt aatgaatcaa attataattg agttcattac      1440
     gttttcactg ttccataggg ctggtttgga ttgtagaatt aaacctttcc aaacaaacgt      1500
     tgagtcttct caattacccg tcgcgtgggc gaagtggaag cgagacttgg aagcgtattt      1560
     caattctgaa aagattgatt cacagtatga cagaagatca aagctgctgt acctgggagg      1620
     ctccgatttg cgtgacatct atgacaattt gccagagagt agtcacattt cacacgtttt      1680
     aagtgaccct ccatattacg atgcggcgat tgcgaaattg gattcccatt ttgagccatt      1740
     tcgccgccgg acttatgagc gccaccagtt tagacaaatc gctcaaaagg ccgccgagag      1800
     attctccgat tttgttcttc gtctaagaac acaagtcaaa cggtgtgagt atgagaaacc      1860
     agacgaaatg atactggacc aaatcgtcga gaaatgtgtg tcgggcaagc tgcgccagaa      1920
     gatgctgaag aaagatatga ctctggacga agttgaggct ataggaacaa gtatggaaga      1980
     aagtgagaaa aagctgatgg agttcgaaac caccaaagtg actgaagatg tgaacagagt      2040
     atcaggaaaa actacgacaa acctgtcgga ccgtgagagg aattttcgcc aaagaggatt      2100
     caagcgagag ttcaaccagg tatatcgccc tcctcaaaga aaattttttg gtaaccgttc      2160
     ggagccggta tgttttgcct gtggtcggcg tggacatgta ataggagctt cgttttgtcc      2220
     agctaaacaa gccacatgtt tgaattgcaa aagagttgga cactttgcgc ggcaatgtcg      2280
     caaacgtcct aacggagatc ctcagccaga gccagctgct aagagggttc gtgtggtcca      2340
     agatacagat acggagaaca ataaggagag cgactatgtt ttctatgcca tgggaaacaa      2400
     cactttctca ttttccgtgg gaggagtgga aatacccatg gtaatagatt ccggagcagc      2460
     tgcaaacata ataactcagt caacatggac agagatgaag cggcagggag cagtagtaca      2520
     gaatatgaca acgcaaattg accgatctct tacgtgttac ggatcagatg aaccgatgga      2580
     aatggttggt tgtttcacgg catctgttgc aggaggagga catcaaacag aagcacagtt      2640
     ctacgttgcc aagaagggcc agcaatgtct tctaggagat gagacagcga agctactccg      2700
     ggtattgaaa gtggggtttg atgttggtcg aatttctgga gattctacga tggagtttcc      2760
     gaaaatgaag aacgtggttg tcgagatacc agtagatcag aacgtccaac cggtccgcca      2820
     atcttatcga cgagtccctt atgcacttga agacaaagtg gaggaaaaat tggacatgtt      2880
     actggcgcaa gggatcattg aaagagttca ggaaccatct ccttgggttt caccactggt      2940
     tcctgttctg aaagactccg gagatgtacg tctgtgtata gatatgcgtc gcgcaaataa      3000
     ggctgttttg agggaggcgc acccactccc tcccgagcgg aagaaaataa ctactgaata      3060
     ccaaattgag gtattccata ccagacaatt tccaatactt acaacctgaa tgaggtatga      3120
     atgagccctg cataagaggt aaaatacctc aaataatacc ttatgcatat tctacaaata      3180
     ccaagctgat aactagatca ggtattgtaa tacctaaata atacttgatg gattttcata      3240
     taaaagtgaa atttttcaat acctccagca gtcctcaata gctatcgaat accaaaatga      3300
     agtattttta attgtttttc aaataccatt ataataccaa aatgaggtat tgacaactga      3360
     ataataccta attatggtat gataccaaaa tatggtatgc ataagttatt ggggagttat      3420
     ttgttcctcc tcgggctcta gtggacgaat tactgggatc tgtagatgga gccaccgttt      3480
     tttctaagat tgacattaag gaggcgtatc accagctaga gatttccaag gagtctcgac      3540
     caatcacaac gtttataacg aagactggct tgtacaggta gattaagcat attttcttct      3600
     gaaacttgaa ctatggattt ttgttgttgt ggttattgat ttttataata ctggcgtgaa      3660
     atagaataaa accgtctaaa cattttgttt cgtttttata ctgttttaga tataagaggt      3720
     tgatgtttgg cgtttcgtgt gcccccgaaa ttttccagaa aacaatggaa accattttgg      3780
     ctggcctgga aggaataatt atttatctcg acgatattgt agtatttgga acaactaaag      3840
     acgaacatga cgaaaggttg cgtaatttgc tcaaaagatt agagcaatat ggagtactgc      3900
     ttaacgaaaa aaagtgtgta tacggcgtaa aagaaattga gtttctgggt cacgtcctga      3960
     acgcggaggg agtaaaacca acagaaaatc gaatcgtggc catcaatcgt ttccgagaac      4020
     ccaagactgt gtcagaactt aggagtttct tgggattggt cacgtatgtt ggtcgtttcg      4080
     tgccaaatct ggctgaaaaa acagaacctc tccgtaaact tctgcgagct gcatcagttt      4140
     tccgatggaa accggaacat agtgtggcat ttcaacagat caagcaagca gtttgcaaca      4200
     ttggatactt ggggtttttc aatcgtgtta atcgaacaaa actggtgaca gacgcaagcc      4260
     cagaaggctt aggagctgta cttctgcagg aaaatgagga aggtgaaact aggataatcg      4320
     cttttgctag caaagcgtta acggatctgg aacgtaaata ctttcagacg gagagagaag      4380
     cactggcgat tgtatgggca gtggagaaat tcagccttta cttgctggga acaaaattta      4440
     agctcataac tgattgcaag gctttaaaat atctttttag ccctcgatct cgcccttgcc      4500
     cacgaatcga gcgatgggtt ctgcggcttc aagcgtatga ctatgagata agctacgaac      4560
     caggatcgag caacctcgct gattcattat cacggttgtc ggtatgttcc ccgaaagcgt      4620
     tcgacatgga aacagatgct tatattcgac aattgataga tcactctgta cccgaagccg      4680
     tggtgttgaa cgatgtcatt gaagcaacaa agaatgataa aaaccttcaa gagcttatgc      4740
     aagcgctcga aacagacata tggtcagaaa gtatcagagg atataagcaa ttcaaaaccg      4800
     aacttcacac cgcagctggg attgttatgc gtggagatcg gttagtaatt cccgaactac      4860
     ttcgaacaca aattattgca tgtgcccacg atggacaccc tgggatgacc gttatgaaac      4920
     gccggctacg tcaaaaggtg tggtggttga ggatggatca ccaagtagaa acatacgtta      4980
     aaagctgcaa tctgtgtacc atggtgtcaa gcgttggtgc tccggagcct atgcaaagaa      5040
     caaggatgcc tacaaaagca tggtcggaag tcgccatcga ttttctgggc ccacttccaa      5100
     atggatatag tttattggta ttgattgact attttagtcg gtttgtggaa gttattgcga      5160
     tgaagagtac aacagcggag ttaacagtaa aggctctttt cgagaccttc agtcgtttcg      5220
     gaattccgaa cattcttcgt tctgatcatg ggccgcagtt tattagcgaa acaatgagaa      5280
     agttttgtaa ggaattcggt attgagcaac agaaaacaac cccatactgg cctcaagcta      5340
     atggggaagt tgagcgcatg aacaatacaa ttctgaaacg gttgcgtatt agtcaagaaa      5400
     cacaaggggc agactggaaa tgggaccttc gaaactttct acttatgtac aattcgacac      5460
     cacatactac aacgggagtg gctccttcct tgctgatgtt tggaagaatc ttacgagata      5520
     aactaccaag tgttactgga gaaacaggcc aaatgacgga ggaaataaga gaccgggatt      5580
     ggagcacgaa attgcagagc gcagaattga cgaaccaacg tagatgtgcc aggaaaagta      5640
     cgttaatggt tggcgatgta gtcatagcga aacggactac gaaggatcat aagttgtcca      5700
     gtaattttgg atcagaaata tttgatgtca tcaggcgatc aggatcaaca gccgagatac      5760
     gctcaagatc gtcagggaaa acgtacaatc gaaacgtatc tcatctgaag caaattgttt      5820
     tgaaaacaaa tgacaatgtt tctgcaaatc aacaggaaga ggatactgat gtttcggtgg      5880
     atgttgtacc ccaagaaagt gatgatcaga taataaacga aaagagtcgc gaacgtcgtg      5940
     aaccgagacc gccaagatat tttaaggatt atgttatgaa ggttgactat ngttctaagt      6000
     aaagggggaa                                                             6010
//
ID   Gypsy-283_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-283_AA_;
KW   Gypsy-283_AA-I; Gypsy-283_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2669-2669 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 242 BP; 86 A; 41 C; 63 G; 52 T; 0 other;
     tgtggtatcc tacatgtgtt aatactttca gtgtatgtca agtagcgccg atagggaatc        60
     agatgaaaca gagacaagta gcgcagatag ggcataagag aggcagacga gaagcgagtg       120
     aaaaagtgga ccgttaggta gaaacgaatg gacgccaata aagtgcagtg cgcgtgttgt       180
     aaacttaaac ctagtgaaat acaaagtatt aattccgaaa tacccgtaat ccggatctca       240
     ca                                                                      242
//
ID   Gypsy-284_AA-I repbase;    DNA;    INV; 4439 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-284_AA_;
KW   Gypsy-284_AA-LTR; Gypsy-284_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4439
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2670-2670 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1965-2423] - Reverse transcriptase
CC   Positions [3465-3944] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(36..2651,2655..4334)
FT                 /product="Gypsy-284_AA-I_1p"
FT                 /translation="MAEGRMNKEELLKWLQEHEVEVPETASIRHLRALYDS
FT                 HPANWITNEKEKEDNAEENIGEEEILDEEIRILKKKKQIADLRRELAGNEL
FT                 LYTRPPDFQDVRCLVPMFAGSDSYVPERWLNDFERACDSVKGDAEFRLKCI
FT                 RRLMEPGTEAEWFLRVDRSTTYAEFRDNFLGNFGHTFTVAEIIDQLRKTTF
FT                 SSCKTSVMGYILKMQEIASRADIDEAQTVQIVIDGFRDRSADIAVLYPAKD
FT                 MVQLKQLARRYAQLREIRTSSVRATPAVPVSASGSTKPKAKIGPDFELRCY
FT                 NCSGKGHISARCTLPRREPGSCFRCGSNEHIIKNCPKPAPRNKDEVALVEE
FT                 FCQGKPIDKSSKELKAALSELNLVSVAFLSDQKVHQVNNFLSLFDTGSPIN
FT                 LVKRSAVPSELIPADKKFSGFRSIGNFPLCAYGIIQARVTYGSHSELLKFY
FT                 VIPDYFMTHPVLLGREFLKAFGIILFNTRSNKYKIEVKSTNEIQISDNRLH
FT                 CVYDLFRKGSVDTLSSCPVCSSYFCTDVADLPIDSIIVPDIYAIELDEDIN
FT                 INPKLDKNIQNKLMAIINDNYLDVTNIPEKQHSYEMKLKLTSDVPISYAPR
FT                 RLSYADRIEVDKIVDELLAAGVIRPSNSPYSFPIVLRTKKSGERRMCIDYR
FT                 SLNKITVRDSYPIPLIDDCLERVEGKKYFTVLDLKSGFHQVKMAQESVPLT
FT                 AFVTPSGQYEYIKMPFGLRNAPAVFQRFINMVLEPFIKDGTIVVYMDDVTL
FT                 ATDTIDEHYDLLGRVLRRLAEFRLEIKLKKCQFCFTEIELLGFSVSNKGIR
FT                 PNSSHLEAIKSMPFPSDAKQVSKCLGLFSYFRRFVPSFSSISLPLRNLIKP
FT                 GSKFEFDDICKRSFIALRELVSAPVLALYNPSRETELHCDASSEGFGGILM
FT                 QKQDDGKLHPIAYFSKRTTAAESRYHSFELETLAIIYSLRKFRIYLEGIPF
FT                 RIVTDCNSLAMTLNRKSINAKIARWALELENYHYTIQHRSGKLMNHVDALS
FT                 RIPVSKNPVVSGISPDDIDFQLQLAQGRDPIILKLREELENGILKDFTLDD
FT                 GLVYRTTPNGKFLFYVPAEMESHVVRNVHEKLCHLGITKTLDQLRMHYWFP
FT                 KMKEKVEKYVKNCVRCIMYSDSNSDGGRVLHSIPKKPIPFDTVHIDHFGPL
FT                 PSIVSKRKHILVIVDAFTKYVKLYAVNSTSTKEVCACLDKYFECYSRPRRI
FT                 ISDRGSCFTSLEFAAYLLENNVEHVKVATASAQANGQVERVNRVLKSMLGK
FT                 VSEPVQHSDWTKMLNKVEFATNNSVHSSTHQTPSILLFGVGQRGREIDSLS
FT                 EYLEDRSNSEEIRDLPALRETASRYIENSQTKNSSSFDKTHAIPHNFTEGE
FT                 YVVIRNVDTTIGTNKKFIPKYRGPYRIHKVLPNDRYVIRDIENCQISQLPY
FT                 DGIIEAARIKRWADWRTP"
XX
SQ   Sequence 4439 BP; 1267 A; 839 C; 1020 G; 1310 T; 3 other;
     acttcagaag tgggatcgag gaaggttggc tgaaaatggc ggaaggacga atgaataaag        60
     aagagctcct aaagtggctt caggagcacg aagttgaagt tccagaaacg gcctctattc       120
     gacacttacg tgcgctgtac gatagtcatc cggccaattg gatcacgaac gaaaaggaga       180
     aggaggacaa cgcggaggaa aacatcggag aggaggaaat attggacgag gagatccgga       240
     ttctcaaaaa gaaaaagcaa attgctgatt tgcggcgaga gctggctgga aacgaattac       300
     tgtatacacg accgccggat ttccaggatg taaggtgcct cgtgccgatg tttgctggta       360
     gtgattcgta cgttcctgaa agatggctga acgactttga acgtgcttgc gattcggtga       420
     aaggagatgc cgaatttcgg ctaaaatgta tccgcagatt gatggagcca ggtacggagg       480
     ctgaatggtt tttgcgtgtg gaccggtcga cgacatacgc cgagttccgg gacaattttt       540
     tggggaactt tggccacaca ttcacagtgg cagaaatcat cgaccagctg aggaaaacca       600
     cattctccag ctgcaagaca tcagtaatgg gttatatcct caagatgcag gagattgctt       660
     cgcgtgctga cattgacgaa gcacaaacag tccaaattgt catcgatgga ttccgtgatc       720
     gctccgctga tattgcagta ctctatccag ccaaggatat ggtgcaattg aaacagctcg       780
     cccgacggta cgcacaattg cgagaaatac gaaccagttc cgttcgtgct acaccagcag       840
     ttcctgtttc ggcttcggga agtaccaaac caaaagcaaa aatcggtcct gatttcgagt       900
     tacggtgtta caactgttct ggtaaaggac acatttctgc tcgctgcacg ctgcctcgtc       960
     gggaaccagg atcatgcttc cggtgtggtt ccaacgaaca catcattaag aactgcccca      1020
     aaccagcacc acgtaacaag gacgaagtgg cactggtaga agagttttgt cagggaaaac      1080
     ctattgacaa atccagcaag gaactaaaag cagctctctc agagttgaac ttggtaagtg      1140
     ttgcttttct gtctgaccaa aaagtgcatc aagtaaataa ttttctctcc ctttttgata      1200
     cgggtagtcc gatcaatcta gttaaacgtt ccgctgtacc cagtgagttg attcctgctg      1260
     ataagaagtt ttccggattc cgaagcatag gaaattttcc tctttgtgct tacggtatca      1320
     ttcaggctcg tgttacgtac ggatctcatt ccgaattatt gaagttttat gttattccgg      1380
     attattttat gactcatcct gttttgttag gacgagaatt tttaaaagcc tttggtatca      1440
     ttcttttcaa tacacggtcg aataaataca aaattgaagt gaagagtaca aatgaaatac      1500
     agatctctga taatcggtta cactgcgtgt atgatttgtt ccggaagggg tccgtagata      1560
     ctctgagcag ttgtcctgtt tgttcgtctt acttttgtac tgatgttgct gatcttccta      1620
     ttgatagtat tattgttcct gatatttacg ctattgaact tgatgaggat ataaatatta      1680
     atccaaaatt ggataaaaat attcagaaca agttgatggc aattatcaat gataattatc      1740
     ttgacgtgac aaacattccg gaaaaacagc actcgtatga aatgaaattg aagttgactt      1800
     ccgacgtccc catcagttat gctccgcgac gtctttccta tgctgaccga attgaagtgg      1860
     ataagattgt tgacgaattg ttggctgctg gtgtgattcg tcctagcaat tctccatatt      1920
     cgtttccgat tgttttgagg acgaaaaaat caggtgagcg acggatgtgc attgattatc      1980
     gatccttaaa caaaataact gtgcgtgata gttaccctat tccgcttata gatgactgct      2040
     tagaacgagt tgaggggaag aaatatttta cggttctgga cttgaaaagt gggttccatc      2100
     aagtgaagat ggctcaagaa tctgttccgt tgacagcatt cgtaacaccg agtggacagt      2160
     atgagtacat caaaatgcct ttcgggttac gaaatgctcc agctgtattt cagcgtttca      2220
     taaacatggt tctagaacca tttatcaaag acggtactat cgttgtgtat atggatgatg      2280
     ttacgttagc cactgacacg atagatgagc attacgattt gttgggacgc gttcttcgga      2340
     ggttggcaga atttcgtttg gagataaaat tgaagaaatg tcagttttgt tttacagaaa      2400
     tcgagctatt ggggttctca gttagtaaca agggtatcag gccaaatagt tcacacctgg      2460
     aagctattaa gagtatgccg tttccatctg acgccaaaca agtgagtaag tgtctcggtt      2520
     tattttcata tttccggcgc ttcgttccat cattttcttc tatttcattg ccactacgta      2580
     atttgataaa accaggttct aagtttgagt tcgatgatat ttgcaaacgt tcgttcattg      2640
     cattacgtga aaanctagta tcggctcctg tcttagcact ttacaatcca tcgcgtgaaa      2700
     ctgaactaca ttgcgatgct agttctgaag gctttggtgg aattctaatg caaaaacaag      2760
     atgatgggaa attgcatccg attgcttatt tttctaaacg gacaacagct gctgaatccc      2820
     gttatcacag tttcgaactg gaaacattag ctataattta ttctctgcgt aagttccgaa      2880
     tttacctaga gggtattcca ttccgaattg ttacggattg taattctctt gctatgacct      2940
     taaaccggaa aagcattaat gctaagatcg ccaggtgggc tttggagctt gaaaattacc      3000
     attataccat tcagcaccgc agcggtaaat taatgaatca cgtggatgct ttgagtcgta      3060
     ttcctgtcag taaaaatccn gttgtttccg ggattagtcc agatgatatt gactttcagt      3120
     tgcagttggc gcaaggacgt gatccgataa tcctcaaatt aagagaagag cttgagaatg      3180
     gtattctgaa ggattttact ttggacgatg gattggtata ccgtacaact ccgaatggga      3240
     agttcttgtt ttatgttcct gctgaaatgg aaagtcacgt tgtacgtaat gttcatgaaa      3300
     agttgtgcca tctgggtatt acgaagacct tggatcaatt gagaatgcat tattggtttc      3360
     cgaaaatgaa ggaaaaagtt gaaaaatacg tcaaaaattg tgttcgttgt attatgtatt      3420
     ccgattcaaa ttccgatggc ggtcgagttt tgcatagcat tccgaagaaa cctattccgt      3480
     tcgacactgt tcatatcgat cattttggtc cacttccgtc gattgtatct aagaggaaac      3540
     acattctagt gattgttgat gcgtttacga aatatgtaaa gctgtatgct gtaaattcta      3600
     cgagtacgaa agaagtttgc gcctgtttag ataaatactt tgagtgttat agccggcccc      3660
     gtagaattat aagtgataga ggatcctgtt tcacatctct ggagttcgct gcttacttgt      3720
     tggaaaataa tgtagaacac gtaaaagttg caactgcttc tgctcaagca aatgggcagg      3780
     tcgaacgtgt taatcgtgtt ctcaaatcta tgttgggtaa ggtatctgag ccagttcaac      3840
     attccgattg gactaaaatg ctgaataaag tggaatttgc tacgaataac tccgttcatt      3900
     ccagtacgca ccaaactcct tccattctgt tattcggtgt tggtcaaagg ggacgggaga      3960
     ttgacagttt gtccgagtat ttggaagata ggtcaaattc ggaagaaatc cgggatctac      4020
     cggcgttgcg tgaaactgca tcccgttaca tagaaaattc tcagaccaaa aattcctctt      4080
     cgtttgataa aactcatgca ataccacata actttactga gggcgaatat gttgttatac      4140
     ggaacgttga tactacgatt gggactaaca agaaatttat tcccaaatat cgaggcccat      4200
     atcgtattca taaggtactg ccaaatgatc gttatgttat tcgagatatt gagaactgtc      4260
     agatatctca acttccttat gacggtataa ttgaagctgc tcgtatcaag agatgggcag      4320
     actggaggac cccgtaaaat tagatgcact aaaggaaagc aacacttgtc atgttnattg      4380
     tttgtgtttt gtgtgtttat atcatgatcg agacgatcat tggtcaggaa tggccgagt       4439
//
ID   Gypsy-284_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-284_AA_;
KW   Gypsy-284_AA-I; Gypsy-284_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-269
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2671-2671 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 269 BP; 63 A; 51 C; 49 G; 106 T; 0 other;
     tgtaatattc cgtgtgttag atttatgtat gttacgactg attttcgaca agagtgtatt        60
     ccgtcaattc ccgattttgt tcgtttatcg attatcgtgt ttccgtttcg attttctgtt       120
     ttagtgtgtt ttattttgaa aaaccacctt tgtatatttt cttgacacac ctcctgtatc       180
     attgtgagtt tgctaaccga cacgttcaga cgcgaaaaat aaaacgtcga aagttcaacc       240
     gcgtgtttta tttggacgcc atctcgaca                                         269
//
ID   Gypsy-285_AA-I repbase;    DNA;    INV; 8217 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-285_AA_;
KW   Gypsy-285_AA-LTR; Gypsy-285_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8217
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2672-2672 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5058-5537] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..2664
FT                 /product="Gypsy-285_AA-I_1p"
FT                 /translation="MAVKLPYADHLINDEVDYELTIRGKFEETKNDVEAKY
FT                 RLLRYLFKEDEKEGRVYESPFTIDQEYDLICSRISELRNKLANGLDDRSLS
FT                 RLKHYWGRVYRIMTKDGESERMRRELLKDIRAELSRFEGRKEYERRPDPFD
FT                 FEGADKSIQNGTKQKEQVTKNGNQEETEGVVSEREKALEAQVEELQRKLEI
FT                 LLNASTGAKGGDENSGMESEKLADANDGSKGYAGLVSHNESQNRREKVDRD
FT                 CRASLSGQSAKENVVNRNVERESGAYSRDRESYERDCYYQRESRNYRAAAN
FT                 PNTHRGSRYRGDEGYEDWDRRRDQWNCDRLDEDRYGGADERQRRGGQMQRQ
FT                 RGVDVGFEQQRFSEYVVRAPGGVPRRAEDYDGRDSYEEQRDSSAFRNEQFR
FT                 NPYEGNRLDRTWRHRPSLQADFAQRRFEGNGARVWGRGERVRRSSGVNARA
FT                 QLDFSSDEFSDDEDGWTRRQFRPRRNFRRITEAEIRDADRRMEKWHLSFSG
FT                 DARSRSLEDFLLKVRRLAAMDRIADDVLMQRIHTILRGEAYDWYLCYADEF
FT                 HDWKQFEERIRYMYGNPNRDQGNRQKIYERKQNRNETFLSFKMEIERLNKL
FT                 LSTPLDPQRIFEVIWDNMRPHYRSKLACKTVDSLRKLEYYAYRIDANDPIF
FT                 RNTREGPSKAIHNVEVEQKDEESYSSESESENVNAIGSKFDKEKRFRDQRS
FT                 GGTNGRGTGNTRETSSSTQTPLCWNCRKCGHLWRNCPEEKRLFCYLCGAQG
FT                 KTVTTCEKHSGDGRTNQVENSGN"
FT   CDS           2784..4841
FT                 /product="Gypsy-285_AA-I_2p"
FT                 /translation="MCPHVIVKIFDKEFDALLDSGASVSVTSLKHLAEENG
FT                 LQVHQSPVKIVTADKTVHKSLGYVNLPMEFRGITKVIPTLIVPQVARTLIL
FT                 GYNFWKTFGIQPMIQGTDGFEQVATVDIRQRADLSRTVELAVLPIESLPAF
FT                 KGADPDESLDIPALELPEPSKATPETVETEHLLTPEQRKELSEAIKAFPCT
FT                 TEHRLGRTSVIQHEIVLNEEVKPRRQPLYRCSPAIQAEMDAELERYKQMDA
FT                 IEECASEWASALVPVRKANGKLRVCLDSRRINALTKKDSYPMRNMGEIFHR
FT                 LGKAKYYSVVDLKDAYFQIPLKEECRDFTAFRTPKGLYRFKVCPFGLTNAP
FT                 FTMCRLMDKVIGFDLEPYVFVYLDDIVIATNTFSEHVRLLRIVGERLAKAN
FT                 LTISLDKSRFCRKKVSYLGYLLTEEGVSIDNSRIAPILDYARPKNVKDVRR
FT                 LLGLAGFYQRFIGNYSRIVAPISDLLKKSRQRFVWTDSAEVAFGELKAALI
FT                 AAPILGNPDFSMPFTIESDASDLAVGAALIQQQDGQSRVIAYFSKKLSSTQ
FT                 RKYSSVEKECLGVLLAIQHFRHFVEGTRFRVVTDARSLLWLFTIGVESGNA
FT                 KLLRWALKIQSYDIELEYRKGKNNVLADCLSRSVETISAVSADTQYQELAA
FT                 KIDQSPAEYRNFRVVDGEILRYCKAEKKAEDARFLWK"
FT   CDS           4956..5924
FT                 /product="Gypsy-285_AA-I_3p"
FT                 /translation="MSMEVKRQCQACMRCQTSKATNQNTTPPMTDQKKLIE
FT                 HPWQFLAMDYVGPLPASGKGRSTCLLVVTDLFSKFVMVQPFREATAETLAH
FT                 FVENSIFLLFGVPEVVLTDNGTQFASRTFGDLLEKYHVTHWKTPNYHPQVN
FT                 DSERVNRVVTTAIRATIRSNHKEWANNLQRIANAIRNSVHNTTKYTPYFLV
FT                 FGRNQVSDGREYRRMRDTRSADEVGLTPEEKEELREEVRRNLKDAYQKHSS
FT                 YYNLRSNANCPTYSVGESVLKKNTILSDKGKGVSAKLAPKYIEAVVKRVVG
FT                 SHCYDLEGLDGKRLGIFHCKFLKKLAKPGSP"
XX
SQ   Sequence 8217 BP; 2374 A; 1531 C; 2216 G; 2079 T; 17 other;
     aattggcgcc caactaaggt cttcggaata ttttgagaat ttatgaaatt tctgatgtgg        60
     aattattttt cggaaaatat ttgcgttata tttatggata gttttaggtt cacatattga       120
     tagtttcgga gtaatgtttc ttccgtaatt ttgggttttg tgtggattct ttgagtgata       180
     tagtgaattt ggtaaattat aagattttgg aaggttttga gatttgggaa atattgaatt       240
     agtacagtga aatatattgg ttatatatag aattagttta tttgttgttt tgttttcttc       300
     ttatattttt cctttgattt aagattacat ttttctatta acatggctgt caaacttcca       360
     tatgcggacc atttgataaa tgatgaagta gactatgagc ttactatacg agggaaattt       420
     gaagagacta aaaatgacgt tgaggcaaaa tatcggctgt tgagatactt gtttaaagag       480
     gacgaaaagg aaggcagagt gtatgaatct ccgttcacga tcgatcaaga gtacgattta       540
     atttgctcta gaatctcgga gttgcgnaat aaattggcga atggtttgga tgatagatcg       600
     ttatcccgct tgaagcacta ttggggtagg gtctaccgga taatgacgaa agatggggag       660
     tcggaacgaa tgcgaaggga attgttgaaa gacataaggg cagagttgag tagatttgaa       720
     ggacgaaagg agtatgagcg acggccagat ccgtttgact ttgaaggtgc ggataaatca       780
     atacagaatg gcacaaagca gaaggagcag gtcactaaga atgggaatca ggaagagaca       840
     gagggcgtag taagtgagag ggagaaggct ttggaagcgc aggtagagga attgcaacgg       900
     aagttggaaa ttttgttgaa tgcatctacg ggagctaaag gtggagacga gaatagcggc       960
     atggagagcg aaaaattggc ggatgcaaat gatggtagca aaggatacgc gggtttggtg      1020
     agccataatg agagtcagaa tcggcgngag aaggtagaca gggactgtag ggcttcacta      1080
     agcggtcaaa gcgcaaagga gaacgtggtc aataggaatg ttgaacggga aagcggagcg      1140
     tacagtagag atcgagaaag ctatgagaga gattgttact accagcgcga gagcagaaac      1200
     tatagggcag ctgccaaccc aaacacgcac agagggagta gataccgagg agatgagggg      1260
     tacgaggact gggataggcg gcgagatcag tggaactgcg acagactcga tgaggaccgc      1320
     tacggtggag cggacgaaag gcaacgtcga ggtggacaga tgcagcgtca acgaggcgta      1380
     gatgtgggct tcgaacagca gcgcttttcg gaatacgtag tccgagcacc aggtggtgtg      1440
     ccgcgtagag cagaggatta cgatggcagg gacagctacg aggaacaacg agacagttct      1500
     gcgttccgta acgaacagtt taggaatccg tacgagggaa atcgactaga ccgaacatgg      1560
     aggcatcgac cgagtttgca ggcggacttt gcacagcgtc ggttcgaagg naatggagcg      1620
     cgagtttggg gtcgaggcga acgggttaga cgatcttctg gagtcaacgc gagagcgcaa      1680
     ttggacttca gttcagacga gttttcggac gatgaagatg gatggactag aaggcagttc      1740
     agaccgaggc gcaacttcag aagaatcacc gaggcggaga taagagacgc tgaccgtaga      1800
     atggagaaat ggcacttgag tttcagcggn gacgcgcgga gcagatcgct ggaagatttc      1860
     ttgctgaagg tgcgtcgtct tgccgcgatg gatcgcatcg ctgacgatgt ccttatgcag      1920
     aggatacaca cgattctgcg aggggaagcc tacgactggt acctctgtta tgcggatgag      1980
     tttcatgatt ggaagcagtt cgaagagaga atccggtaca tgtacggcaa ccccaatagg      2040
     gaccaaggga atcgtcagaa aatctacgaa aggaagcaga acaggaatga aacatttctg      2100
     agtttcaaga tggaaataga gcggctgaat aaactgttga gtactccgtt ggatcctcag      2160
     cgaatcttcg aggtaatttg ggacaacatg cgccctcatt accgttcaaa actggcgtgc      2220
     aagacggtag atagtttgcg taagctggag tactatgcgt acagaatcga tgctaacgat      2280
     ccgattttca ggaatactcg agaaggaccg agtaaagcga ttcacaacgt cgaagtggag      2340
     caaaaggatg aggaatcgta tagctcagag tcggagtcgg agaacgtgaa cgcgatagga      2400
     agtaaattcg acaaggagaa gaggttcaga gaccaaaggt caggagggac taacggaaga      2460
     ggtacaggga atacgcgaga gacttcgagt tccacacaga ctccgttgtg ttggaactgc      2520
     aggaagtgcg gtcacttgtg gagaaactgt ccggaagaaa agaggttgtt ctgctacctg      2580
     tgtggtgcgc aaggcaaaac ggtaactact tgcgaaaaac attcggggga cgggagaaca      2640
     aatcaggtag agaactcggg aaactagatc tggaatgcca gttggggaac gacagcattc      2700
     caatctctac agttcccaac aatacagatg ttcctttcgt agatccgtat caaaacgtat      2760
     acgaagtgaa aattcacacg gacatgtgtc cacacgtaat tgttaagatt ttcgacaagg      2820
     aatttgacgc tcttttggat tcaggggcaa gcgtgagcgt aacgagcttg aagcatttgg      2880
     cagaagaaaa tggtctacag gtncaccaaa gtccggtcaa aattgtgacc gcggacaaaa      2940
     cggtgcacaa aagcttaggg tacgttaact tgccaatgga atttcgggga ataacgaaag      3000
     tgatcccaac cttaatcgtt ccacaagtag cgagaacctt gattctgggg tacaactttt      3060
     ggaaaacttt cggaattcaa ccgatgatcc agggtacaga tggtttcgaa caagttgcca      3120
     cggtggatat taggcagcga gccgatttga gtcgaacagt tgagctggct gtattaccga      3180
     ttgaatcact gccggcgttc aagggagctg atccagacga gtcgttggat attccagctt      3240
     tagaactgcc agaaccttcg aaggctacgc cagaaaccgt agagactgag catctattga      3300
     ctccggagca gagaaaggag ttgtcagagg ccataaaggc atttccgtgt acgacggagc      3360
     atcgtctggg aaggacatcg gtgattcaac acgaaatcgt gctcaacgag gaagtaaaac      3420
     cgaggcgcca accactgtat cggtgctccc cagcgataca agccgaaatg gatgccgagt      3480
     tggagcgata caagcagatg gatgccattg aggaatgtgc cagtgaatgg gcgagcgcac      3540
     tagttccagt tcgtaaggcg aatgggaagc tacgtgtgtg cctcgattct cgaaggatca      3600
     acgctcttac gaaaaaggat tcgtacccaa tgaggaatat gggagaaata tttcatcgat      3660
     tggggaaagc gaaatactac tcggtggtag atctgaaaga tgcatacttt cagatccccc      3720
     tgaaagaaga gtgtagagat ttcacggcat ttcgaacacc gaagggtttg tatcgtttta      3780
     aggtctgtcc tttcgggttg acgaatgccc cctttacaat gtgtcgtctt atggacaaag      3840
     ttatagggtt cgatcttgaa ccctatgtat ttgtatacct ggacgacatt gtgattgcga      3900
     caaatacgtt cagcgaacat gttcgactgt tgcgtattgt aggggaaaga ctcgcgaagg      3960
     ccaatctgac gatttcgttg gacaaaagca gattttgccg gaagaaagtg tcctatctag      4020
     gttacttgtt gaccgaggag ggagtgtcca tagacaactc tcggattgca ccgatcttgg      4080
     actacgctcg accgaagaac gtgaaggatg tgaggcggtt gttaggtcta gcnggcttct      4140
     atcaacgctt cataggaaac tatagcagga tagtagcacc gatttccgac cttctcaaga      4200
     agtcgagaca gaggttcgtc tggacggact cagcggaagt agcattcgga gaattgaagg      4260
     cagcgttgat tgctgcgcct attctaggca atccagattt ctctatgccg ttcaccatag      4320
     aatctgatgc ctccgatctc gctgtaggag cagcattgat ccagcagcaa gatgggcagt      4380
     cccgggttat tgcttacttc agcaaaaagc tgagcagcac ccagaggaag tactccagcg      4440
     tggaaaaaga gtgcctcgga gtgttgttgg caattcaaca ttttcgccat ttcgttgagg      4500
     gcactcggtt tcgagtggtt accgatgcgc gcagcctctt atggttgttc accattggcg      4560
     tggaatcggg caacgcgaag ttgttgaggt gggcattgaa aatacaatcc tacgacatcg      4620
     agctagaata caggaaaggc aaaaataatg tcctagccga ttgtctatcg agatcggtag      4680
     aaactatctc cgcagtaagc gccgatacgc agtatcagga actggctgca aagatcgacc      4740
     agagtccagc cgagtaccgt aatttccggg tagtggatgg ggaaatttta cgatactgca      4800
     aggcggaaaa gaaagcggag gatgctcgtt tcctttggaa anggtatccc ccaaaaggag      4860
     agcgtgaggg aatngtgagc aagatacacg atgtagcaca tcttggnccg gaaaagacac      4920
     tagctgctgt taaagaacgg ttctggtggc caaaaatgag catggaggtt aagcggcagt      4980
     gccaggcctg tatgaggtgc caaacgagta aggctaccaa ccagaacact acaccaccga      5040
     tgacagacca aaaaaagctg atagagcatc catggcaatt cttagccatg gactatgtcg      5100
     gacctttacc agcctcggga aagggtagga gtacctgttt gctggtagtg actgatctct      5160
     ttagcaaatt cgtcatggta cagccattca gggaagcaac agcagagact ctagctcact      5220
     ttgtcgagaa ttcgatcttt ctgttgttcg gtgtacctga agtggtgttg accgacaacg      5280
     ggacacagtt tgcttcnagg acgtttggag atctgctgga gaaataccac gtgacgcact      5340
     ggaagacgcc gaactaccac cctcaggtga acgactcgga aagagtaaat cgagtggtga      5400
     cgaccgctat ccgtgctacc atcagaagca atcacaagga gtgggcgaac aatctacagc      5460
     gcatcgcgaa tgccatccgg aattcggtgc acaatacgac caagtatacg ccatatttcc      5520
     ttgtatttgg acgaaaccaa gtatccgatg gcagggaata taggcggatg cgggatacga      5580
     ggtcagcaga tgaggtgggt ctcacacccg aagaaaaaga ggagttgcgg gaagaggtgc      5640
     gtaggaattt gaaggacgcc taccaaaaac attcgtccta ctataatctg aggtcgaatg      5700
     cgaactgccc gacttattcc gtcggtgagt ccgtcctcaa gaagaacacc atactatcgg      5760
     acaaggggaa aggtgtttca gccaagctgg caccgaaata cattgaggcg gtcgttaaga      5820
     gagtagtggg cagtcattgt tacgatttgg agggtttgga tggaaaaaga cttggcattt      5880
     tccattgcaa gttcttgaaa aaacttgcca agccaggctc tccataattt gacctgaatg      5940
     accttcagct atgtacctgt cttagacagc gacgatgaac cagtgctagg cctggtctca      6000
     taaaaatact tgaagtgaac cttttcccag ctatgacact cttggggtta aacccaagag      6060
     ctacgattac tccgttgaag ctgtgctccg ggtaaataaa acacattttc gcctttgcaa      6120
     agcttagcac tgatcttcgg atcagttgcc gcccctacaa aaccttttta cttactaggg      6180
     gcatccttgg actgttaatc ggtccaagaa gaagctttgc aatgtgctgg aaaaaggaat      6240
     tttggtggtt ctttcaaata gaaccaatta ggaagaagta gttgtggcta ttcgtgatcc      6300
     cctcgaccag aagtcagaga gagctctggg agtcttcccg agcgatgatc tcaaagccaa      6360
     aagctcagag ccgaaaggtt atgacgagca gtactgtcca aggaagtgaa attcgtgagt      6420
     ctgatattgg ggagtatcag atgctgatcg aaaagaaaga ctcagaagtt ttctggaagg      6480
     aaaaacgatg ttgagcaacc cgagtcaatc gagcgatagc tacaacaact tcgaaaaatg      6540
     gctctatttt ggaagtacca aaaagtactg cccgaaagtg ggagggacga ggttacacct      6600
     cacgaattca aaaatttgct ctcaattaag acgatcaagg agaatttccg caatttgtaa      6660
     ataatgttag taaggtagtt cacaaaagtg gttcttacat ctagtttagt acttaaaata      6720
     agaatcttta atttcataat ttaaaatata agcatgantt agaattttcg gcctctgttc      6780
     ggaccaggcc acccctctct gtgtcgtctt cgtgcgtatt ccgtcgcang tcttcttctt      6840
     ccgtccgata gtacctaaaa atagaaaagt aaattaaaat acggtanaca attcgtgaga      6900
     agattggaaa accacttccc tgtcaagcga tcctctggga actgcctcat ccggccggtg      6960
     gggtggtctt caaaaatagg tcgtccgata tcccaaatag ctccagccag caggagggta      7020
     cccgtcgtcg gtgttctcga gcctccgtca gccagtctnt tttcctctcg tnagccaanc      7080
     taaaccacaa attaaaagaa aatttcatta cttacagttc aatagtcata ctttgtcttc      7140
     agtttttcga tattcgaagc cattctccgt ccgtatttag ggttaaattt acctaaaaac      7200
     tttcacaatt ttcggtttca ctgcactttt taatgtttac ttttagtttg acgtttatca      7260
     atgtgggtgg gtgtatcact gtatgggtgt cgtgagtgtc cggagaaaat actctctgag      7320
     tgacgtagta gtgagttggt ttgtgtattt ctcatttgat aatgcttcaa gagagccgga      7380
     gaggagttct ggcgtttgaa atgttgttga aatgttgttt gagtgaaatt aagggtgcgc      7440
     actcacgttt tagcgtaggc cacagaaaac tgtggcgggt taacatgtgt tgtggcgcga      7500
     atttttgttg tgtggtttat gtttacgttt cgtcctacac agagacgtgt aagccgggta      7560
     gcaggctcgg tggctctctg tgagacagaa tcgttgcggt gatttcagag gagaacgttt      7620
     taccaacgat gaggattggt gtagttgcga atctgaatga tccagttctg tatgtgtatg      7680
     tatatgcggt catatcggag gaatgtaata gaccaacgtt taggtttggt gtttgatttc      7740
     tcgatgtgct cctgttatgt gttgggttaa gttcattgat agacagttgt ttgttaatca      7800
     atgacgtgtt gttgggatga tgcttctgct gagaatgaaa gttgccagca gtaatgcagt      7860
     tttgagattt ctttgtggtt tgagattttg ttggttaagg tatttcccct acattgataa      7920
     cgtcaaacag ctcaatcttc ctttggggtg aacctaagtt ttgtaaatat gtttgtaaat      7980
     aaagatagag tgtaatatat agatggatta ttgntttttt taattattta ttttttgaat      8040
     tatgtatatg gaaaataggt taggaacccg gttgaaattt gaaatattta aaagctaatg      8100
     ggaattgaat gaattctgta cataaaaagt aaaatttacc actacgaaaa tttggtttaa      8160
     atccttaaac caaattttcg taaaacagcc ctggtgcaat gtagcggtca ggagttt         8217
//
ID   Gypsy-285_AA-LTR repbase;    DNA;    INV; 1830 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-285_AA_;
KW   Gypsy-285_AA-I; Gypsy-285_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1830
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2673-2673 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1830 BP; 470 A; 393 C; 466 G; 495 T; 6 other;
     tgtatatatt ttgtaaatat attccgntat ganatttgta aatattgtcc aaatgcgttg        60
     atatgaatta agatgtcaat aatagtaaat gtacagtaga ntaagcaaat tcaaattata       120
     agaaatccct tagcgtaggc aatcgcgagt tgcgaacnct ttgctgaatc tctcctaggg       180
     cgggcttatc ggtttgttcg aaaggttgga aagggacagc tgcacnacca tcgtgccgag       240
     ttatccttcg tgactgtatg gtcacgaatg tgtacgagga agttttcggg aaatgacgaa       300
     tttccggttt gtccgagatt cactttcctt aatctgagga gtcacagatt cgttcatttc       360
     gttcgtgact acccagcaaa caagaagtgt gcgcgtttgt aatctattcg ttttccgtag       420
     tgaagtatgc tacttttagt gacgttaagt acatgttaat taattaaata tttattcgtt       480
     ctctagttcg tgaaaagtgt gcgtagttag gatttgtgtg cgaattagcg tgatagccaa       540
     atatccaagg taattgtgct cgatatgtgc catgtagtgt cgtgctcagt gttcgtttta       600
     gccgtaaggc tggtttattc gcagcaaata cacccgcacc caagcgcgtg gtcttccccc       660
     ttcacggacg aaaaccttcc cagcaaaccc ccaaccggct ggaagtcggc cgatccgtca       720
     ccaaatcgac cgagtgaggt tcaggggacc tctaggattc gcaggtcggc caatccatcc       780
     gaccgactgc gaagctcgat tattgtcgcc gccattgcga gaccccggct ccggtgaaga       840
     acgcgtcatt caacagtacc gccattggag atcgccgctc gtctagacga ggacactgac       900
     ctgggtcaca ggtcaacgac agcgtaaggc aagccaacga actcggtgag tcaagcccat       960
     ttgaaccttt tcttggagtg aagtggggcg tccggtgagg gcgcctcgga gtgttttttt      1020
     gtccagtctt agactgaaga gtatgcgcta ctaaagcctt actagtggga gaagtgagga      1080
     tcacgatgcg tgcgtgacga attgccgccg ccagatccga ttgtcaccag gagtgcagac      1140
     tagcccgcag atgcactgcc ttcgacggtg acgtagaaca cgtagagcac atgagcacag      1200
     aacagataga gatagggaga gaaatcgcac acatgatagg gagatagaga gaacgaacac      1260
     acacaaacgt tgaaataaaa tgctagcatt aaggaaatca tgaattagtg gattgtaaat      1320
     aaattattcg ttcgtcaacc atgtggtcnt taaaccaata aacgctaatt agtttgtaac      1380
     cgtaattcca aatgtttaat tgttttcatg tgtagaccgt cacttcgcgt ttccttatcg      1440
     tccccgtcct ccttatggag tgtgatcgtt gggtactcag tccgcttcct atttgttgat      1500
     gcgtagcgcg tcgaacgacg agtctgcccg tgatgagaaa gagcgagcgg cagcatatgt      1560
     tggctcgtat tgagaatgag tgattctctt accggagtct ctgagtgcct tcttgattgt      1620
     gtggttgcgt agcgataata gggtgaaccc cgttcggtcg tttggttcgt aagtcagctg      1680
     aagcgatctg taaaattcct ttcgggaaaa ttaaatggac tcgccctcag gagagtctca      1740
     accgggcaaa ttaaaattgg gcatgtggtc tcccttgtgg agtggcgctt aagctacgtg      1800
     ctttaagacg gatcgcccgg gctggctaca                                       1830
//
ID   Gypsy-286_AA-I repbase;    DNA;    INV; 6514 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-286_AA_;
KW   Gypsy-286_AA-LTR; Gypsy-286_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6514
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2674-2674 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3591-4127] - Reverse transcriptase
CC   Positions [5229-5696] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2943..6053
FT                 /product="Gypsy-286_AA-I_1p"
FT                 /translation="MAPLLSVSLANNGCEKEKDDIPAYDPPTEEDAFVVGH
FT                 VAGKRVVFFIDSGAQVNTITKKILDKILADSSKVNKVYDLNYTSDKSLRAY
FT                 ASQGEIAVIATFSAKLYVSKDRPICLEKFYVVEEMRSLMGFNTAARYSLLD
FT                 IGLRVPVGGSSTIWKCELAMGNAGTSSHVEEFPKFNVPPVLLHYDKDMPPA
FT                 RNVYTHIPAGFKKLAQQKLNELLSSGIIEPVTEDMDRSFCSSLLVVPKGKA
FT                 DIRLVVDLRGPNKCIHRTPFKMPTFETILMKLHGARWFSTIDLKNAFFHVV
FT                 LDERCRHLTNFFSGEALYRCRRLPFGLCNAPDIFQEIMQSIILAGCEGTVN
FT                 YLDDVLVFGATKEEHDSNLKEVLRRLEDHNVKINEEKCLLGQQEVPFLGFH
FT                 LSAEGWSIEDDKIKAIKNFRRPQNQDEVRSFLGLINYIDRFIHHRADKTWQ
FT                 LRELARAEHFYWSEDLDREFEYLTCTAWRKIKTLGYYSQADETELYVDASP
FT                 HGLGAVLVQFDRNSNPRVIACASRSLSSAEEKYPHAQKEALAMVWGVERFS
FT                 NYLMSITFKIRTDAKSNEFIFGGKHRIGKRSVSRAEAWALRLQSYSFSVES
FT                 IPGDLNIADALSRLVIESKPTESFDDSSEGHLLFVLDTENMEINWNEIELE
FT                 AEIDEEQKEVRKSMMTEKWNTSLQAYECHAKYLRLLGALIFKEDRVVLPQK
FT                 LRDRALELAHQGHIGAASMKRILRNHFWWPGISKDVQKYVDACETCLRLSR
FT                 KNAPLPLTSRELPQGPWEILQIDFFTDKDFGHGEFLVVVDCYSRYIHVIEV
FT                 KNMDADTTNAALTRIFEVWGCPLAIQSDNGPPFQSDKFVKMWEHKGVRIRK
FT                 SIPLSAQSNGAVERQNSGIKKALAAARLDNTNWRTALEKYVHVHNKIRPLS
FT                 RLGVTPFELLVGWKYRGTFPSLWDTKTSDSLDRVDMQDKDAVSKLQSKKYA
FT                 DKRRGAANSDLQVGDVVLVALQRNHKSDPTFSEERFTILARDGAKVVIRSE
FT                 RGVQYSRNIQDVKKVPECLKNFADVVDQDEV"
XX
SQ   Sequence 6514 BP; 2041 A; 1267 C; 1502 G; 1703 T; 1 other;
     atggcgcagt tggtacgaaa cccgagtcaa catcttcccg gtgagtatac tatttgtttg        60
     tatatgaaat aattggggct gtagtcgaga cagtttccaa agaagatccc tggtagttga       120
     gacagggtat cttagaagag agctgtaaac aaaattgata ctgtagtcga gacagtattc       180
     atgaagagaa atcagaaatt aagaattact ttctgaaatt acaatgaacg attgatatga       240
     attcgagtaa ttgaaatgtg acttctgttt tttttgctct ctttaaatag taaaacgaaa       300
     acgaaagtct ccaagaaaat gcttctggcg gagctgtcag cgctcaagca ggaattggca       360
     acaatacgat cagaaaaaga gccatcattt cgggatttcg atgcaagtgc aacgcataac       420
     gattctgtgg actgtggact tagtgaagtg acgcagcaac caagcatgtc aggaaacggc       480
     tcattgttag cgactatgag caacatgtcc ctcggttccc tgaatatccc ggagtgcaag       540
     ccaacggaag gtgaaacaga tgttgataag aaggcttatg aacactggaa ggaaattctc       600
     aacgcgtcgt tcaacctagt ccacgccaca gacgagcaag ccaaaatgga catatttcgt       660
     atcaaagccg gtccgaagct gctggaagtg atgcaaggaa cttcatcaac cgctgacatg       720
     ccagatcaac gtatcaaacc tttttccaat gcgttggcac gattggacca ttatttcgga       780
     tcacggacct acattattgg acaacgagga aaacttatga atatggtaca gcagcccgga       840
     gaatccaata tttccttcgt gcgtcgagta gcagctgcgg ctaaactgtg tgactacaag       900
     aacgaagagg agatggaagc cgttgtacgg actattgtta aaggaacgtt cgatagccgt       960
     gtccggcagt gttgctgaac agtgatcgga aacgcgaagc acgatgaatt ttcgtaggca      1020
     tcaaaacaga atttgcgaat aaacacgaac aaccgttcgg gcgcttcatt cgttcgtgtt      1080
     tcattttcgg atcgctgttt ctcccgacgc tatcatcggg tgattttcca tcgctcggta      1140
     atgtgaacgg tacgatccac gctgcctgtt cttcgcgaag aacaggaaaa tattcacttc      1200
     gatcatcttc atgcgggctc gcaacaagct agtgctggtg tttatcatgc gcgtggttta      1260
     ttgatttatt aatttggaaa aaaaaaaatg atttgcatgt acctactttg gtgtatttaa      1320
     acggtagaaa acctgtaatc gaaatcttcc agacctctca ggttttttca acaatgtttg      1380
     ggtaaattca attaaactca acaacaaaat aacaaaagca ttttttgttt taatagtttg      1440
     atgctatagt tttacatctc acttataata agagtcaaaa tcagtacatt ttgcgattcg      1500
     tatacatgcc atcgatttta tattgcaact gtacctaaac attgccagaa aattgttgcg      1560
     caattagctc aatagcggtc gctctccaag ccatagtcag cagcacccag ccacgctcgt      1620
     gctgtgcact tcaagcatgt ttttgttggt ctgcatgtac tcagtacacc atgcaaccag      1680
     cagagtgttt gcttgacttt acgagaagaa gcaaccttgc aatgaaccac gagaatgaac      1740
     agcgcgtgga taaatgaatc ctacgagtgg gaaggcttcg cgagccactt atcggtgtgt      1800
     tcattttggt tcttcggcgt tgcatccgtt cgcttttttc gatgctcttc gtgacgcaga      1860
     aatgaaaaat gaattttggc gaatattgga tcgcgaagat gcgtcgatca ccgttcacga      1920
     agaagatcca tcgcaacact ggtgtccggg ttctagcgca taggaactgg gtaaatcaag      1980
     gagacatgaa tagtctgatc gcattggtac gagaccgcga gatggagata tttaatgaag      2040
     aggaatatca gaagttgaat cgccagagca atgccacaat cgcaacagta tcgcaaccct      2100
     ctacttcaag gagagttttc cgaggcagtt caggaacaag atacagaggc atccagcggg      2160
     gaagaggagc gtttcaacgt ggacgagctc attctcaggg cccgctccgt aaagcatgtt      2220
     ggcgatgtgc cagcatctac catgagccat ctcgctgccc taatttggat aaggtgtgcc      2280
     acaattgcaa acgccgtggg cacctagctc gatcgtgtac atcactgccg cagctcggag      2340
     ttggacagaa acgtccgcat aacgaatcag gagaaggaga gccaatgcag aagatcgccg      2400
     caatcaccca gaatggggaa gagaaagagg ccgaggtaat ggataatgat gatattgaat      2460
     aagcttaagt caagaactat cttatctaac acttgaagta tgtttggatg aataaagttg      2520
     atttactaca caaaatttgt taatcgtctt atgagtaaaa agagaaaatc acattgaact      2580
     ctgcttctta accctcataa tcattcgata gttgtttgga atagtacgaa atgtctggaa      2640
     ctgaatttcg ggtcattcaa ttcttatttg gtaaatgttc ggctggaatg gatacaaaca      2700
     acagaaacat gatgaaaaga cgataataac ccaagtaata ttagtagctg aataacagtt      2760
     tatcccactg aagttagctt gagagtgatt tgttcaactc atattcatca aaaatggttg      2820
     ttgggaataa ctcctgaaat gtcaaacatt ttcaaagatg ttagataaga cagcttggcg      2880
     ttatatgttc caaaattaaa tcggcatgtt tgaaacatac atattttcat atattttagg      2940
     caatggcacc tttgcttagt gtttcgttgg ctaacaatgg ttgcgagaag gaaaaagacg      3000
     atatcccagc ttacgaccct ccaactgagg aagatgcttt tgtagtaggt cacgtagccg      3060
     ggaaacgagt tgttttcttc atcgactctg gagcacaagt aaatactatt acgaaaaaga      3120
     tattggataa aatactcgct gatagctcca aagtaaataa ggtgtatgac ttaaactata      3180
     catctgacaa atcgctacgg gcctatgctt cacaaggaga gatagctgta atcgcaactt      3240
     tctctgcaaa attatacgta tccaaggaca gaccaatctg cttagaaaaa ttttacgtgg      3300
     ttgaagagat gagatcttta atgggcttca atacggcggc tcggtacagt cttttggata      3360
     ttgggctgag agtacctgtc gggggaagta gtaccatatg gaagtgcgag ctggcaatgg      3420
     ggaatgcagg caccagctca cacgtagaag aattccccaa gtttaatgtc ccgcctgttt      3480
     tgctgcatta cgataaagat atgcctccag ctaggaatgt ctacacgcac atacccgctg      3540
     gtttcaaaaa actggcacag caaaagctaa atgagctctt gtcgtcgggt attattgaac      3600
     cagtgacgga ggatatggac cgctcttttt gctcttcatt attagttgtg ccgaaaggaa      3660
     aagccgatat ccgattggtc gttgatttga gaggcccaaa caaatgtatc cataggacac      3720
     cattcaagat gcccactttc gaaacaatac tgatgaagct tcacggggct agatggtttt      3780
     caacaattga tctcaaaaac gcctttttcc atgttgtcct tgatgaacga tgtcggcact      3840
     taaccaattt tttctctggt gaggctctgt atagatgccg gaggcttcca tttgggctat      3900
     gtaatgcccc agacatcttt caagagatta tgcagtctat tattcttgcg ggatgcgaag      3960
     gcactgttaa ctacttggac gacgtgttgg tgttcggtgc aacgaaagag gaacatgact      4020
     cgaatctcaa ggaagttctc agacgtttgg aggatcataa cgtcaagatc aatgaagaaa      4080
     aatgcttact tggtcaacag gaggtgccgt tcttgggatt tcacctatct gccgaaggat      4140
     ggagcataga agatgataaa atcaaagcaa tcaagaattt tcgcagacct caaaatcaag      4200
     acgaagttag aagcttcttg ggattgatca actatatcga tcgattcatt caccatcgag      4260
     cagacaaaac atggcagcta agggaattag ctagagcaga gcacttttac tggtcagaag      4320
     atttggatcg agaattcgaa tacctaacat gcactgcgtg gagaaaaatt aagactctag      4380
     gctattatag ccaagctgat gagactgagc tttatgttga cgcctctcca cacggcttgg      4440
     gagcagtctt ggtccaattc gaccgcaatt ccaacccaag agtaattgct tgtgcttcta      4500
     ggtcattgtc ttcagcagaa gaaaaatacc cccacgctca aaaggaggca ttagccatgg      4560
     tttggggtgt ggagaggttt tccaattacc taatgagtat aaccttcaaa attcgaacag      4620
     acgctaaatc aaatgagttt attttcggtg gcaaacaccg aatcggaaaa agatctgtct      4680
     caagagcgga ggcatgggcg ctcaggttgc aatcctacag cttctctgtc gaaagtatcc      4740
     caggagactt gaatatcgcg gacgcgcttt cgagattggt catcgaaagt aaacccaccg      4800
     agtcattcga cgattcgtct gaaggacatc ttctttttgt gttggataca gaaaatatgg      4860
     aaatcaactg gaatgaaatt gagttggaag cagaaatcga cgaggagcaa aaagaagtac      4920
     gcaaatctat gatgacagaa aaatggaaca cgtcgctaca agcatatgag tgtcatgcca      4980
     aatatttgag acttcttgga gcattgattt ttaaagagga tcgagttgtt ctgccacaga      5040
     aactgcgaga cagagcactc gaattggcac atcaaggaca cattggagcg gcgtcgatga      5100
     aaagaatttt gcggaatcat ttctggtggc caggaataag taaagatgtt cagaagtacg      5160
     ttgatgcttg cgaaacatgc ctacgacttt caaggaaaaa cgctccactc cctcttacta      5220
     gcagagagtt accacaaggt ccgtgggaaa ttttacaaat agatttcttt acggacaagg      5280
     attttggtca cggtgaattt ctagtggtgg tagactgcta ctcgagatac attcatgtta      5340
     tagaagtgaa aaacatggac gcggacacaa caaatgctgc ccttaccagg atatttgagg      5400
     tatgggggtg tcccctagcg atacaaagcg acaacgggcc tccattccaa agcgacaaat      5460
     tcgtcaagat gtgggaacat aaaggtgtca ggattcgaaa atccatacct ttaagcgctc      5520
     agtctaacgg agctgtagag cggcaaaata gtggtattaa gaaagcactg gcagccgcac      5580
     gactggacaa cacgaattgg aggacagctc tagaaaaata cgttcatgta cacaacaaga      5640
     ttcgcccatt gtctcgtttg ggggtaaccc ctttcgaatt gttggtgggc tggaaatatc      5700
     gtggcacttt tccgagtcta tgggatacca aaacgtctga ttcacttgac cgcgttgaca      5760
     tgcaagataa agatgcagta tccaaacttc agagcaagaa gtatgctgat aagcgcagag      5820
     gggctgcaaa ttccgacctc caagtgggag acgtggttct agtggcttta caaaggaatc      5880
     ataaatctga tccaacattt tccgaggaaa gattcacaat actggctagg gatggagcta      5940
     aggtagtaat tcggagtgag cgaggagtac aatattcccg caacatccaa gacgtcaaga      6000
     aagttcctga atgtctgaag aattttgctg atgtcgtgga tcaagatgag gttatnaata      6060
     tggatttgaa caaccgtgaa ataccagaaa tcgaaataga cgaaaccatg gaagacgctg      6120
     tttacgataa agaggataag ccgaaccgcc cgagaagaac aataacgatg cccaacagat      6180
     tcaaggatat ggtactatac agtatttttg aataaaaagg taaatatggg tttcagtaaa      6240
     tttaaacttt acctaattta gtttttatat acacaggtca actacataca aaccctatca      6300
     acgatgtcgg aaacagtggg aaaaatggct gtagaaaaaa ttccgtggca ttaaattttg      6360
     aacttttgtt agtataagtt tgtattatat tgctttaaaa tcataatcaa acaaataagc      6420
     tatcaaacaa tatatgcatt aaaatatata tgtactgtat tgaatacaga aaagaagagt      6480
     aggagtggaa agtattgtag agaaaagctc aggt                                  6514
//
ID   Gypsy-286_AA-LTR repbase;    DNA;    INV; 902 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-286_AA_;
KW   Gypsy-286_AA-I; Gypsy-286_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-902
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2675-2675 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 902 BP; 305 A; 206 C; 183 G; 208 T; 0 other;
     tgaataataa attaataaat gaatttcaaa cacaactaaa gttcttcaat aatatcacgc        60
     ttagaatttg cacaaacaat actgtcttct ccctatgatt tttcgcctcg agactccacc       120
     tcgtaaacat agtcgacttc tgaaagaaat aaattactca caacgatgga taggtggagc       180
     tcttttcacc atattgtgaa gtataaaagc caaggtaatt ctgagcatag gccattcagt       240
     aatcgaaagt caaaacgaac gaaacgttca gacagcgaca aaacacgcaa ccgaaaatag       300
     cgcgaaagcc ttaaccaatc gcgtgcgagc agcgaacggt gcgacgaagc aacaaggcga       360
     gaaccccacc actcgccatc ggtgaacggg actggagcat ataaaaccag tggttgtttt       420
     gctcccagct cattcacaaa tcgaacggcg taacgaacgg atcatctgga gcagcaaaga       480
     agagcgaacg gaaccagaga gcgaaagcaa caactgaaaa gcattcagta gtcagcgcca       540
     aaggtacggc caacgaaata tacaccatct gcctctcctt accattcatg ttcttgatga       600
     attcaatgaa atggtttggt ttggcgatgg tgcaaagagt tgtttagaag aatgatttca       660
     cttaacaaag agttgttgat aaatattcca atcaataaga gtcaggttaa aatagttcac       720
     atttagcaga attttcttcg gaaaatttct gttttaccaa agagttgtta ttgaaattcc       780
     tgcagcaaag ggtcgagttt ctccccacga atatttccgg ccaggaccag tcatggagga       840
     caacccatcc cgagcaccac tgcccccacg gccactaccg gcggcaatcg gaaatttcga       900
     ca                                                                      902
//
ID   Gypsy-287_AA-I repbase;    DNA;    INV; 4224 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-287_AA_;
KW   Gypsy-287_AA-LTR; Gypsy-287_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4224
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2676-2676 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3271-3783] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1573..4011
FT                 /product="Gypsy-287_AA-I_1p"
FT                 /translation="MRHQPTQTKTLHHIITTGPPVFCRSRRLPMDKLNEAK
FT                 AEFKFLMEQGICQPSKSCWASPLHMVRKSNGKWRPCGDYRALNAITVPDRY
FT                 PIPHIQDFSTVLHGKKIFSCIDLQRAYHQIPVAPEDIPKTAITTPFGLFEF
FT                 KFMTFGLRNAGQTLQRHLHEILGDLDFVFPYVDDFIIASKDEEEHKQHLRR
FT                 VFQRLRENGLVINPSKCQIGLPSVEFVGHLITADGIRPTPKKVEAVLNFPR
FT                 PSTAKQMKRFLGTINFYRRFIQHAAEHQRILQNMIHGNVKNDRTPLEWDES
FT                 TNQAFEQCKNDLAHAALLAHPSPEAKLALEVDASGTAIGAVLHQLDESGLQ
FT                 PLAFFSRKLSDAKQRASTYDRELLAMYEAVKYFKDLITAREFCIYTDHKPL
FT                 VTAFQQRSDRATPTQQRHLSFISEFTTDIRHVPGEANKVADMLSRISSITT
FT                 TIDFDCMAAQQNDDPELQQYLKSPPQGSGLILKALKSPLSSLPMYCDISTA
FT                 AIRPFVPKEFRASIISSLHNISHPGVRATVRLVADRFVWPSLRRDCKQFVT
FT                 HCIPCQKSKVHRHNRSPILQINTPIERFAHVHMDLIGPLPPSDGFVYCLTL
FT                 IDKFSRWPEVLPIPNMTAATVARAFISGWVARFGVPIRVTTDLGRQFESDL
FT                 FRELTRVLGITHLKTTPYHPQANGQIERTHRQLKAAIMCHSNTKWTESLPI
FT                 VLLGMRSSLREELQASSAEATYGTTLRLPGEFFSEVPTKPLTPEVVMDLKL
FT                 TMAKLRPTPMSNHSKHQPYIQKELAACSHVFVRVGAIKPPLTPPYDGPYKV
FT                 LRRKKKVFIIE"
XX
SQ   Sequence 4224 BP; 1202 A; 1197 C; 889 G; 935 T; 1 other;
     aattttggtg accccgacgt gatcggtacc ataaagtcgc gagtttcttc tgccccgtag        60
     cagaaagttc gtaaaatccg ccgcgtttgc gaaaattcag agccactttt gtgaaccaaa       120
     atccactagt gtgtgaactt tttgccgtcg tcgaacaatg tctgaagacg ataaacaaag       180
     ccttcccggt tcgtcgtcga tcgcgaccaa agtgagtgaa cccactataa tcgcgaaaat       240
     cggatatccg gaattcgacg ccgatgacat cgacacctgg ttcatgtgct tagaagcggc       300
     cttcagcgtc aaccaagtga aagtggacaa acaaaaattc aacgccgtca ttgttgcact       360
     cggtccgcgc gccaagtttg tgtatagcac aatagcgcag tgtaatgacg ccaacaacaa       420
     cgatcgctat gaaacattaa aagccgcggt gatcgctcac ttccaaccat cggaagcaca       480
     aaggttaacc agcttgctat ctggaatcac actcggtgat caaaagccca gcatcctttt       540
     gtccgaaatg cgtcgacttg gcgggaaagg atgcactgat agcgtgctga tgaatttgtg       600
     gttacgtgct ttgcctacaa cagtgcgttc tatcatcgcc gccatgccaa ccgccaccct       660
     ggacgaacaa gcgaaggttg ccgacaaaat catggaagcc ccgaggaatg aaatttcggc       720
     agtccagtca tctactaccc cgcagcgtgc cgacctggag cagcgcatcg aagcattatc       780
     ccaacgcttg gaacaagtcc tttctggaaa cttccaacat cgtcagcgaa accgaaatcg       840
     ctcacacagc cgatcctctg gacgccatag atcatcgacg ccatcgcagc cgaagaatcg       900
     acgatggatt tgttggttcc actatcgtca tggcgcccaa gccaagaaat gtgagaaaca       960
     aaaaggcgat aacccaaatg ttgcctgcat tttttatgac ggaaaaatcc ctgtgtacgt      1020
     tcgccaagaa aaaaattaaa gtgcgtgcga tcccctgatt gcacggaaaa gcccaaaccc      1080
     ctgtttgaat catctatccc tgaagaaccc agctttgatc tgaaccgccc ctcgcacata      1140
     cgtcgcatcc acgttcacga ccaaaaatcg acccagtcct tcctcgtcga caccggtgcg      1200
     gacatttccg tgattcctcc ctcgcctaga gaaaagttcc accctgttaa atcgagacag      1260
     ctctttgctg caaatggaag cccgatccca acctatggaa ctaaacgcct caccattaac      1320
     attggcctcc gtcgcccctt cgagtggatt ttcacgatcg ccgatgtgaa gtcgccaata      1380
     ataggtgcag actttctcaa acactatgat ttgcttgtgg atctgcgaaa cggcaaacta      1440
     gtggataaca ccacgcgctt gtgtatcaac accatcaaag cagattccga atcaattccc      1500
     atctccactt tcaacgtgaa caatcccttt gccgcaatat tgaaggaatt tcaggatata      1560
     actgtgttga acatgcgtca tcaaccaacc caaacgaaaa ctctccacca catcatcact      1620
     acaggcccgc cagttttttg ccgttcccga agacttccga tggacaaatt gaacgaagcc      1680
     aaagccgaat tcaaattcct gatggagcaa gggatttgcc agccctccaa aagctgctgg      1740
     gccagcccat tgcacatggt gcggaaaagc aacggtaagt ggagaccctg cggagattat      1800
     cgggcactga atgctatcac tgttcccgat cgttacccta ttccgcacat tcaggatttt      1860
     tctacggttc tacacggtaa gaagattttt tcgtgtatcg acctgcaacg cgcttaccat      1920
     cagatccctg tcgcgccgga ggacatcccc aaaacagcga ttacaacccc gtttggcctt      1980
     tttgaattca aattcatgac cttcggcctg cgtaatgccg gccaaacctt gcagagacac      2040
     cttcacgaga tcctaggcga tcttgacttc gtcttcccat atgtggacga cttcattatt      2100
     gcctcgaagg acgaagaaga acacaaacaa caccttcgta gagttttcca acggttacgt      2160
     gaaaacggcc tggtaatcaa tcccagcaag tgccagatcg gattaccgag cgtggaattt      2220
     gtgggccacc tgataaccgc cgacggcata cgaccaaccc cgaagaaagt cgaagcagtg      2280
     ttaaattttc ctcgtccaag cactgccaaa cagatgaaac gtttcctagg caccatcaac      2340
     ttctacagga gattcatcca gcatgccgca gaacaccagc gaatcctgca aaatatgatc      2400
     catgggaatg tgaaaaatga ccgaacaccg ttagaatggg acgaatccac caatcaagcc      2460
     ttcgaacaat gcaaaaacga tcttgcacat gcagctcttc tggcacatcc atctcccgaa      2520
     gcaaaactag ctctcgaagt ggatgcctct ggaactgcaa taggcgccgt tctccaccaa      2580
     cttgatgaaa gcggcctaca accactggca tttttctcac gcaaactaag cgatgccaag      2640
     caaagagcca gtacgtacga ccgcgaactt ttggctatgt atgaagcagt caaatacttc      2700
     aaagatctga taaccgccag ggaattctgt atctatacag accacaagcc tctcgttact      2760
     gctttccagc aacgctcaga ccgagcaaca ccaacacagc aacggcatct cagtttcatc      2820
     agcgagttta cgaccgatat tcgccacgtt cccggcgaag cgaacaaggt tgctgatatg      2880
     ttaagccgaa tcagctcaat caccaccact atcgatttcg actgcatggc tgcacagcaa      2940
     aacgacgatc ccgagttaca gcagtatttg aaatcaccac cacaaggcag cggattaata      3000
     ctcaaggcac tcaaatcacc tttgtcatcc ttacccatgt actgtgatat ctcaacagca      3060
     gccatcagac cttttgtccc gaaagaattt cgtgcctcga tcatctcaag cctacacaac      3120
     atctcacacc ctggagtccg agcaacagtt cgtctagttg ctgatcgttt cgtctggccg      3180
     tccctcaggc gggattgcaa gcaattcgtc acacattgca tcccgtgcca aaaatcgaag      3240
     gtacacagac acaacagatc acctatactg cagatcaaca ccccgatcga gagattcgct      3300
     catgtacaca tggatttgat cggaccctta ccaccatctg acgggttcgt atactgctta      3360
     acactaatag acaaattctc tcgttggcca gaggttctcc ctattcccaa tatgactgca      3420
     gccaccgtag ctcgagcctt cattagtggt tgggtcgcac gattcggagt acccatccga      3480
     gtcactaccg atcttggtcg gcaatttgag tccgacctat ttcgcgaact tacaagagta      3540
     ttgggcatca ctcacctgaa gacgacgccc tatcaccctc aagccaacgg gcaaatagag      3600
     agaacgcacc gacagttaaa ggccgcgatc atgtgtcact ccaacaccaa gtggacagaa      3660
     tcgctgccga tcgtgcttct tggtatgaga tcctctctga gagaggaact gcaggcatca      3720
     tctgcagagg ctacatacgg gacaacactt cgtttgcctg gagaattttt ttccgaagtt      3780
     cccactaaac cactaacacc agaagtggtt atggatctca agttgaccat ggctaaactt      3840
     cggccgacac ccatgagcaa ccactccaag caccaaccgt acatccagaa agagttagct      3900
     gcctgctcgc acgttttcgt cagagttggc gctatcaagc cgccacttac accaccatac      3960
     gatggaccct acaaggtact acgacggaaa aagaaagtgt tcatcattga gatnaagggt      4020
     aaaaagcagg ctatctccgt cgatcgcctc aaggcagcac acatctcaac caccgaacag      4080
     caaccaatac agccagcagc aactaccatt gacccagcgt ctccatctag ccgagctcta      4140
     agccgagatg aaccagcatc atacagaacc aaatcaggac gtcatgttaa gattccccgt      4200
     aggttttggt aaagggggga gcag                                             4224
//
ID   Gypsy-287_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-287_AA_;
KW   Gypsy-287_AA-I; Gypsy-287_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2677-2677 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 227 BP; 77 A; 62 C; 27 G; 59 T; 2 other;
     tgtggcgtaa cacagctatg ctcctcaatc actcaatcat accactcaca ctccaaatca        60
     ttccactcat tctcacaata tgtaanacac agtagctaca ctcatctcnt ttagaggctc       120
     attaaagagc atatgatcga tccaatgtaa attatatttt agtaataaat tgaccacagt       180
     accgaccaca cgcatccctt tcaatcggaa agctaaggaa tacccca                     227
//
ID   Gypsy-288_AA-I repbase;    DNA;    INV; 4429 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-288_AA_;
KW   Gypsy-288_AA-LTR; Gypsy-288_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4429
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2678-2678 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3324-3788] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..4412
FT                 /product="Gypsy-288_AA-I_1p"
FT                 /translation="MSRSENPDGTQDGNSGGGGDVVPTGSLSEVMRQMAIQ
FT                 NTRLMALLEQFTGGTQPALQRSAPEHIIESLSSAIKEFHFDPENGLTFDRW
FT                 FSKYEDLFRQDGRNLDDPAKVRLLLRSLSVPVHEKFLNYLLPSHPRDFTFD
FT                 QVVEKLKAIFGQQKSLFSKRYDCLQLIKSEADDFVTYAGVVNRQCEEFELQ
FT                 KLSVNQFKSLVFICGLKSAKDSDVRTRLLSKLESDAADTNIEGLVTECQRL
FT                 SNLKHDTALVEKKHSSSAVQAVRQSKTKSSSHSKSSTADSKVPPSPCWQCG
FT                 SMHFVKDCLFSQHTCKQCGKMGHKEGYCSCSSKSSAPTSASDKKVSKKGKK
FT                 TQMKTIQTVKHIQSRRRYVTVTFNGTQAELQLDCGSDITVVSQETWEKIGQ
FT                 PTVKPTQMEATTASGESLELVGEFTATVTISNVTREDRCYITSVKDLNVIG
FT                 LDWMDAFDLWSKPLAAHCKKVKLSNLPRDEQYFPARYPEVFQEGLGLCTKT
FT                 QISLNLKPDAQPVYRPRRPVPFHATEKVEEELDRLQRLDIITPTDFSDWAA
FT                 PIVVVKKPGGKVRICADYSTGLNAALEANQYPLPTPDEIFAKLAGKRVFSI
FT                 IDLSDAYLQVEVDDEAKKMLTINTHRGLFRFNRLAPGVKSAPGAFQQLMAK
FT                 MTAGLEGIDVFLDDIIVHSENEEKHFAALNALFKRLREYGFRLRLEKCRFN
FT                 QKEIKYLGHIVDANGIRPDPAKVSAIVQMPAPTDVTTLRSFLGAVNFYGKF
FT                 VREMHQLRHPLDNLLKKDVKFIWSQECQHAFSDIKCVLQSNLLLTHYNPEH
FT                 EIIVAGDASKTGIGAVIMHRLPNGSIKAVSHAAKSLNQAEQNYSQIEKEAL
FT                 ALVFACTKFHRMLWGRRFTLQTDHQPLLKVFGSKKGIPVHTANRLQRWALT
FT                 LLGYDFAIEYVSTQNFGYADVLSRLINNHEKPDEEAVIAMVRVEDDVSSSL
FT                 QDTLQNLPVTSKMVQDATAKDPVLQKVSSYIKNGWPARAEAVPDEVKPYFG
FT                 HRESYSLIGGCVMMVDRVVIPKCLQKRILKRIHDGHPGIERSKASARGIVF
FT                 WPRIDNDIADYVRRCSSCASAAKSPPQANPQPWPDADGPWQRLHLDFAGPL
FT                 DGFYYLVVVDSSTKWPEILQTRSPTSSTTIFFLRECFARFGIPTVIVTDNG
FT                 SQFVSAEFRKFCEELGIVHFRTAPYHPQSNGQAERFVDTLKRSLKKIIGGG
FT                 ETSTATALQTFLHIYRSTPSAVLGGESPDKKMLGRSMRTTLDLLRPTYQPV
FT                 RETPKPNRKFEAGTAVYAKVHSSNEVWKWMPGVVIERIGNVNYNILLDHQI
FT                 GRRKVLRSHIDQLKIRSGEDIETERPVPLNILIQDFGLHQQAEPEQQSQSY
FT                 IGNDATIVPVQQPHGSGDQRGHVTEQHLESVVNDSLPAEDPSEDEEFDETL
FT                 LEDLQREPPSYSTPLQQQLPTQRPQRSVRPPKKFDEYIRY"
XX
SQ   Sequence 4429 BP; 1254 A; 1132 C; 1062 G; 981 T; 0 other;
     atttttggcg acgagttttg aagtcctgaa gattttgcaa gcgaaaatcg atgtctcgaa        60
     gcgaaaatcc ggacggtact caagatggaa attctggcgg aggaggagat gtcgtgccaa       120
     caggttcgtt gtcggaagtg atgcgtcaga tggcaatcca gaacacccgt ctgatggccc       180
     tcttggaaca attcaccgga ggaacacaac cagcactgca gcgaagcgct ccagagcaca       240
     tcattgaatc cctgtcatcc gcaatcaaag aatttcattt cgacccggaa aacggactaa       300
     cattcgaccg ctggttttca aaatacgaag atctcttcag gcaggacggc agaaacctgg       360
     acgacccggc gaaagtgcgg ctattgctgc gcagccttag cgttccagtt cacgagaagt       420
     ttttgaatta tctcctgcca agtcacccac gcgattttac cttcgatcaa gttgtggaga       480
     agttgaaggc tatttttgga cagcaaaagt cgttattcag taagcgatac gactgcctgc       540
     agctcatcaa gagtgaagcc gatgatttcg tcacgtacgc tggggtcgtc aaccggcagt       600
     gcgaggagtt tgaactacag aagctttccg tcaatcaatt caaaagcctt gtgttcattt       660
     gcggattgaa gtcagcgaag gactctgatg tcaggactcg acttttgtca aaactcgagt       720
     ctgatgcagc cgacaccaac attgaaggcc tagtgaccga atgccagcgt ctatcaaact       780
     tgaagcatga tacggcgttg gtcgagaaga agcattcatc ttcagcagtt caagcggtcc       840
     gacaatcgaa gacaaagtca agcagccact caaaatcgtc aacagcagac agtaaagttc       900
     caccatctcc atgctggcag tgtggatcca tgcattttgt gaaggattgc ctgttctctc       960
     aacacacctg caagcaatgt ggaaaaatgg gccataagga aggatactgc agctgttcgt      1020
     cgaagtcttc tgcaccaacg tccgcaagcg acaagaaggt cagcaagaaa ggcaagaaaa      1080
     ctcaaatgaa aactattcaa accgttaagc atatccagag ccgaaggagg tacgtaaccg      1140
     tcacattcaa cggaactcaa gcagagttgc agctagactg cggctccgac atcacggtgg      1200
     tctcacaaga aacctgggag aagattggtc aaccgaccgt caaaccgact caaatggagg      1260
     caacaactgc atccggagaa tccctggagt tggtgggtga gttcactgca acagtcacaa      1320
     tcagcaacgt cactcgggaa gatcgctgct acatcacttc ggtcaaggat ctcaatgtga      1380
     ttggcctaga ctggatggac gctttcgatc tgtggtcgaa accgcttgct gcacattgca      1440
     aaaaagtgaa gctttcaaac ctacctcgtg atgaacagta tttcccagct cgatatcctg      1500
     aagtcttcca ggaaggatta ggtctctgca ccaaaactca aattagtctg aatctgaagc      1560
     cagatgcgca gccagtttac cggcccaggc ggccagttcc attccatgcc actgaaaagg      1620
     tcgaagagga attggaccga cttcaacgtt tggacatcat aacacccacc gatttttcgg      1680
     actgggcagc tccgatagtt gtcgtcaaga agccaggcgg aaaggtccgc atttgcgccg      1740
     actactccac cggactcaat gcagctctag aagcgaacca gtacccgcta ccaacgccag      1800
     atgaaatctt cgccaagctc gccggcaaac gcgtgttcag catcattgat ctttccgacg      1860
     cgtaccttca agtagaagtg gacgatgaag cgaaaaagat gctgacaatc aacacccatc      1920
     gtggcttgtt ccgattcaac cgtttggcac caggagtgaa atcagcacca ggcgcattcc      1980
     agcagctgat ggcgaagatg acagcaggcc tggagggaat cgacgttttc cttgatgaca      2040
     tcatcgttca cagcgagaac gaagagaaac attttgcagc tctcaacgca ctcttcaagc      2100
     gactacgtga gtatggtttt cgtttacgct tagaaaaatg ccgattcaac cagaaggaga      2160
     tcaagtacct cggacacatt gttgacgcaa atggaatccg acccgatcca gcgaaggttt      2220
     cagcgatagt ccagatgcca gctccgacgg acgttacaac cctgcgatcg tttcttggcg      2280
     ccgtaaactt ctacgggaaa tttgtacgag agatgcacca actacgccat cctctggaca      2340
     acctattgaa gaaggacgtc aaattcatct ggagccagga atgtcaacat gcgttttcgg      2400
     atatcaagtg tgtcctgcaa tcgaatctgc tcctcaccca ttacaatccg gagcacgaaa      2460
     tcattgtagc tggtgacgca tccaagacgg gtattggagc cgttataatg catcgcttac      2520
     ccaacggaag catcaaagcg gtttctcatg cagccaaatc gctcaatcaa gccgaacaaa      2580
     attacagcca gattgagaag gaggcccttg cgctagtatt tgcctgtaca aaattccatc      2640
     gtatgctctg gggtagacga ttcacgcttc aaactgacca tcaaccgctc ctgaaagtat      2700
     tcggatcgaa gaaagggatt ccggtacaca ccgcaaaccg tcttcagcga tgggcgctca      2760
     cactcttggg atacgatttt gcgatcgagt acgtttcaac acagaatttt gggtacgcag      2820
     atgtcttgtc gcgtctcatc aacaaccacg agaagccaga tgaggaagca gtaatcgcaa      2880
     tggttcgagt cgaagatgat gtcagttcca gtttgcaaga tactctacaa aacctccctg      2940
     tcacttccaa gatggttcaa gacgctacag ctaaagatcc agtactgcag aaggtgtcat      3000
     cctacatcaa gaatgggtgg ccagcgcgag ctgaagctgt tccagacgag gtaaaacctt      3060
     attttggtca tcgagagtcc tattcattga tcggaggctg cgtgatgatg gtggatcgag      3120
     tcgttattcc caagtgctta caaaaacgta tcttgaagag aattcacgat ggtcatcccg      3180
     gaatcgaacg ctcgaaggcg agtgctcgag gaattgtttt ctggccacga atcgacaacg      3240
     atattgctga ctacgtccgc cgatgctcaa gctgcgccag tgctgccaag tcccctccac      3300
     aagccaaccc acaaccgtgg ccggatgcgg atggtccatg gcaacggcta catttggatt      3360
     ttgctggtcc attggatgga ttctactatc tggtcgttgt ggactcaagt acgaaatggc      3420
     cagaaattct gcagacgcga tctccgacaa gctcaactac aatctttttc ctccgcgaat      3480
     gtttcgcccg attcggcata ccaacggtaa tcgtgacaga caacggaagt caattcgtca      3540
     gtgccgagtt ccggaaattc tgcgaggagt taggaatcgt tcatttccgc acagcgccgt      3600
     atcacccgca atcaaatggc caagcggaac gatttgttga cactctcaag cgctctttga      3660
     agaaaatcat tgggggagga gagacttcaa cagcaacagc actccaaacg ttcctgcaca      3720
     tctacagatc cacaccatcc gctgttctgg gaggagaatc accggacaag aagatgctcg      3780
     gacgttccat gaggaccaca ttggaccttc tacgtcccac gtaccagccc gtcagagaaa      3840
     ccccgaaacc caaccgaaag tttgaagctg gaaccgcagt ctacgccaaa gtacattctt      3900
     ccaacgaagt ctggaagtgg atgccaggtg ttgtcatcga aagaattggc aatgtcaact      3960
     acaacatcct ccttgatcac caaattggcc gacgaaaggt gctacgatcc cacattgacc      4020
     agttgaagat ccgttccggc gaggacattg aaacagagcg accagttcca ttgaacattc      4080
     taatccagga tttcggtctt caccaacaag cagaacccga acagcaatcc cagtcgtaca      4140
     ttggtaatga tgcgaccatc gttcccgttc aacaacctca tggttccggc gatcaaagag      4200
     gccacgttac cgaacaacat ttagaatccg tggtgaatga ttcgctacca gctgaggatc      4260
     caagtgagga tgaagaattt gatgaaacgc tcctggaaga tttgcagcga gaaccaccgt      4320
     cgtattcaac acctttgcag cagcaactgc caactcaacg tcctcagcga tccgtgcgtc      4380
     caccgaagaa gtttgatgag tacatccggt actaaccaaa agggggaga                  4429
//
ID   Gypsy-288_AA-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   19-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-288_AA_;
KW   Gypsy-288_AA-I; Gypsy-288_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-153
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2679-2679 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 153 BP; 46 A; 35 C; 32 G; 40 T; 0 other;
     tgctaccaag gcaccgattt gcaaccaagc aagccttgga agacggcgtc gctaggagga        60
     gaaaaatatt tcagttgtcc tgtattagct tttgacaaga atagacgtaa ttagcagtta       120
     ctccgagtct tttcattccc accgatcata aca                                    153
//
ID   Gypsy-289_AA-I repbase;    DNA;    INV; 8276 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-289_AA_;
KW   Gypsy-289_AA-LTR; Gypsy-289_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8276
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2680-2680 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3632-4060] - Reverse transcriptase
CC   Positions [7142-7546] - Integrase core
CC   'CCGAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3161..4765
FT                 /product="Gypsy-289_AA-I_1p"
FT                 /translation="MLIDSGSKHNLIDDTTWALMKLKDVKITNQRTDTEKR
FT                 FLAYGRIPLKLVTAFDATLEVEDGSKLLSTTTFEKGQQPLMGKMTAQRLGV
FT                 LKIGLPNTQQSFESFETNRIEAKKKFPKIRGVSLNLPIDRSVPSVIQPFRR
FT                 CPIPLLEKVKSKIDELLEMDIIEKVTNPASWVSPLVPIIKDNGDLRLCIDM
FT                 RRANQAIQRLNHPLPIFEDFSPKFRNAQYFTTLDIKQAFHQVELDENCRDI
FT                 TTFITNWGLYRYKRLLFGVNCAPELFQNLMESIFAGCKNTVVFIDDIMIYG
FT                 STEEEHDAALKDTLKALERHGVLLNDHKCQFKQRETMFLGHKLSAECFAPA
FT                 DEKVRSILQFRAPQTKEELRSFMSLVTYVSKFIPDLATVNFPLRKLLKQDT
FT                 TFDWKSEHQQSFDELKKRIGSASHLGYFDPKDRTLVVTDASGVGLGAVLIQ
FT                 FKANQPRVISYASKSLSEAEKKYPIIEKEALGIDWAIERFSTYLMGITFEL
FT                 ETDHRPLETLFSTTSRPTARIERWVLRVQAFKFKVNSSI"
XX
SQ   Sequence 8276 BP; 2741 A; 1481 C; 1694 G; 2360 T; 0 other;
     gtttggcgac aaggatataa gatccagcgt gcaagaattt aatctcggag aaacaaatca        60
     atttttatca ttgcgtgaat attaatcgga gtgctgtgaa aggaaggtga aaaaaaatgt       120
     gcaaaaatca atgtgtctga aggctgatta tgtttctgat gctcgaatga aagtctgcaa       180
     aagtgaaaaa aatggattgg agtgaaagaa agaaggaaaa ttggaactat ttattgttga       240
     aagtatgaaa tgtgaataaa attgataaaa tttttgtgat gagtgcgtat taatgaaaaa       300
     tggaaaagaa ttcaattcaa tccaacatga aatatcgtgg cgtctatggg gttgcagtgg       360
     catgccgccg aagctactgc tggcagttca aggtcgagtg tgtgcgcgcg tctgtgtgtt       420
     ttttttcttt gcaaccagct ctaacacaac tcatcgctat ggaaaatatg accataattt       480
     gttcaacatg catatctgat tgcgattgtg tactttgtgt ttcaaaccct ttgactagac       540
     ggtaagagat cggagattta aggtaagtcc atgcgaattt tgattgattg ctgttctgaa       600
     tagggtaatg actgtttatt ttgttctcaa acgctaacag ttggcgccag cggcaaaaat       660
     tacagacaac aaccattcga acattcagtt tctcttaccg gccgccgagc ggcgacactg       720
     ttgtgtgtat tcttcccact gatcgcgcta cgctggattc tcaaatttct caaactttca       780
     acacaagcgc atggaagaat ggtagtcgga gaactgtcaa aacgtatgga aaataatgaa       840
     aatcgtaaaa tgcttacaat ttggaaactg gatcaaaaaa atagtgatta gaaaacaagt       900
     gtaaagtgaa tacataactt tttgtgttta gttcatcttc cgtggtgctt tctttgcttc       960
     aggatttcgt ttttactacc actgaaaaag agccatctat tgccttttca gttttgacta      1020
     tcgccctatt atggtcaact tgaattggaa ttttataagc gtatcgcatc agtcgacctc      1080
     cacgtgtgtg ggtgtttttt cccattgagg gacatgaatc accacattga gttaattgag      1140
     cagctatgga ttatcatgcg ctcttcgatt gaagcttaga gagagaaaga gagagagaaa      1200
     atttatgcat tgtgatattt gttgtgagta cgaaagctcg gtttttatga tgtgttgatg      1260
     ttgcgcttgt gtatgtcaca gtcagatgtg gttattcact ctaacggtag cgcagaactg      1320
     ctgagtggca ccaatcgctc gcgcttatag atgattcgag aatgtacatt cttcaatgat      1380
     gtgtatgaag taaaatgaca aagaacactc ttaaatgatg tgtacgtaga acgaaaatga      1440
     acactcttga atgatgtgta cgtggaatgt aaaagaacac tctttaatga tgtgtacgta      1500
     gaatgaacaa gaacactctt gaatgatgtg tacgtgacaa tggaaatgaa cactcttgaa      1560
     taatgtgtac atagaataaa acagaacact cttaaatgat ttgtacgtag aacaaaaatg      1620
     aacactcttc aatgatgtgt acgtggaatg taaaagaaca ctatttaatg atgtgtacct      1680
     acgtggcaat ggaaatgaac acacttaaat gatgtgtaca tagaatgaat aaaaccactt      1740
     gaatgatgtg taaggatcaa aatgaaaaag aacactcttg gatgatgtgt atgtatgttc      1800
     atgaataaga aaaaaaaact gatgttgaga tggtttgcgt ttgaatgatg cgattataat      1860
     ttagtaatgg acggatgaac gagctagata aatatcattc tagctaattg atacatcttt      1920
     tgtaaaaata actataacaa tgatagattt gcatgtctga tgttgtgtaa acatcacaaa      1980
     aaaagaatgt aatgtaatga atgaaatgta tttttttaaa caggaataat aaacacgatg      2040
     gagggtcagt acgatcagaa taatgatgaa atagtacaag ttgtccaaca acatgtatca      2100
     ttatttagtc ccacatcgta aaatttgccg caatacaagt ttaaacattt gccgccctca      2160
     gaagttagaa attcttggaa tgggtggatt agatggtttg agaccatcat ggcggcagcc      2220
     aatattattg acggcgccag caagaagctg cagcttctag ccatgggtgg cctcgaattg      2280
     caaagcgctt tctatggtat accgggatat gacgatatta gccctactga agatccatat      2340
     ttagtggcaa aagaaaagct caaccaactg ttttcaccaa agcatcacga tagcttcgag      2400
     cgattcatgt tttggtcaat ggcacccgaa gaaagcgaga ccattgacaa atttgcatta      2460
     agagttcagc agaaagctga gaaatgttca tttggcagaa cagaaattga aagcagaaat      2520
     atagctgtaa tggacaaaat cattcagttc acccctgatg acttaagaca aaagctgctg      2580
     gagaaagacg gtttgaccct agataccact ttgaaaactg tgaacgtcta tcagtctgta      2640
     cgctatcaag cttcgaaaat ggtaccaaaa ccaagcacgt cgggtgataa tcgattatac      2700
     gaacattcac gaaaactacc cgattctact caacgatgtg tacgctgtgg ctataaacgc      2760
     catcgtgata aggatcactg tccggcgatt aagagaacat gtttgaaatg taaggtggtt      2820
     ggacactttc agtcagtttg caggattaaa ccagcagcga acaatgtagg tattctgttt      2880
     atattgtata catttcctta agatattgat cgtatggtta aagaatatct tttttttttt      2940
     actaaatatt taaacttaat acgctttcgt cgaccgtaaa agcaaaccgg gctttgtgaa      3000
     tgaacatgaa ttacctcgca ccttttaacg cccgagaaac gtctttaatg ttgaagatgt      3060
     taaacgagat tcccctgagt tggaagatct tcctgtgtat aatgtaggag atgacaaaga      3120
     agaactcata acatgtcgaa tcggtggcgt tgaagtcgtt atgcttattg actcaggctc      3180
     aaagcacaat ctcattgacg acaccacttg ggcattgatg aagctcaagg atgtcaagat      3240
     taccaatcaa agaacagata ctgaaaagag atttttggct tacggtagaa ttcccctaaa      3300
     gctcgtcaca gctttcgacg ccacgttgga agtcgaagac ggcagcaaat tgttgagtac      3360
     caccacgttt gaaaagggac agcagcctct tatgggaaag atgactgcgc agcgtttggg      3420
     agtattgaag atcggtttgc ccaatacaca acaaagcttt gaaagctttg aaacgaacag      3480
     aattgaagct aaaaagaaat ttccgaagat cagaggagtt agtttgaatc tgccgataga      3540
     tagaagcgtt ccatctgtta ttcagccttt tcgtcgatgc ccaataccgt tgcttgagaa      3600
     agttaaatcc aaaatagatg aactgctaga aatggacatc attgaaaaag ttacgaatcc      3660
     tgcgtcttgg gtgtcacccc tagtaccaat catcaaagat aatggggatc ttcggttgtg      3720
     catcgatatg cgcagagcga accaagcgat ccaacgactt aatcacccat tgccgatatt      3780
     cgaagacttc agtccaaaat ttcgaaatgc tcaatacttt accacactcg atatcaaaca      3840
     agcatttcat caagtagaat tggatgaaaa ctgccgtgat attaccactt tcatcacaaa      3900
     ctggggtttg tacagataca aaagactcct cttcggggtg aactgtgcac cagaactatt      3960
     tcaaaatctc atggagagca ttttcgctgg ttgcaagaac actgtggtat tcattgatga      4020
     tattatgatt tacggttcaa ctgaggaaga acacgacgca gcattaaaag atactctgaa      4080
     ggctttagaa cgacatggcg tactacttaa tgaccacaaa tgccaattta agcagagaga      4140
     gacaatgttt ctgggtcata agttgtctgc tgaatgtttt gctcctgctg acgaaaaagt      4200
     aagatcgata ttgcaattcc gagcccccca aacgaaagaa gaactacgaa gcttcatgag      4260
     tttggttacg tacgtttcaa aattcatacc agatttggcg accgttaatt ttccattgcg      4320
     aaaacttttg aagcaagata caacttttga ctggaaatca gaacaccaac aatctttcga      4380
     tgagcttaaa aaacgaattg gttcagcatc ccacttgggg tatttcgatc cgaaagaccg      4440
     aacacttgtt gttactgacg catcaggtgt tggattagga gcggtgctga ttcagttcaa      4500
     agcaaatcaa ccacgtgtta tcagctatgc atccaaaagc ttgtcggaag cagagaagaa      4560
     atacccaatc atcgaaaaag aggcgttagg gatagattgg gcaatagaga gattcagtac      4620
     ttacctgatg ggcataacat ttgagctgga aacggaccac cgccctttag agactctttt      4680
     ttcaacaaca tcgcgaccaa cagcaaggat tgagcgctgg gtattacgag tgcaagcttt      4740
     caagttcaag gtaaatagtt caatttagca tttaggatag gacttaagat aagttttctc      4800
     aacgtattta aatcgaattc ttaaaacgat tgtaggttgt gtacagaaaa ggaaccgcga      4860
     atattgccga tgttctgtcg cgtttaggtt cccatgtcga agatcgccaa tgggcagatg      4920
     aatcggaagt atttatacga cgcgtcatgg cccaaacgat tgcatcactt agtggaagcg      4980
     atgaccgcga gatttttgat gcaaacacag agtgtatgat tcgatcggtc caagaaggtg      5040
     cggccttaga cattgcagag gtagtgtcag caactgatca agatcccgaa atgcagaaac      5100
     tcaaggattg cattctcagt ggtaagtgga ataacgatga tttcaaacct tataccgtaa      5160
     aacggggtaa ctttgataat gcgggtaact ttgatagtgc gagacccaca acatattaaa      5220
     cgaaataacg aagtttctgt taatcagtta agcaaaacga atgtaaaagt aaagagtatt      5280
     agtatgacac ttcatgtcaa agctattttc attggaatca agtgcatttg aggcttttta      5340
     tacgaatatt aaaaattgac acaattttag catttttgaa acgcttacaa acaatctgtt      5400
     ctacgatcac tatttgatgt agttttgaat agttggccag ttatctttga cagcctagtt      5460
     atcatagaac ttgaatacgg tctcaaattt cttagcgaat agcattttca caaactggga      5520
     tcatttttgt aatctaagtc agaaatttcc atataacgtt aaaagcctag aggtatgcaa      5580
     tgccctacaa atgttcgtta ttcattcaat tttgttcgat tcatactcca ttatcaaagt      5640
     taccccaaaa cggaaaacca actttcgctt atatgaaaaa ttatatatcc attcataata      5700
     aatcttttgg aaatctatcg actgcaatcg atagctagga tgccagtact tgttttaaaa      5760
     atataaatta taattctttg aaacagcttt cataaatatt caagttttct tcgaaaaaac      5820
     tatcaaagtt accccgtttt acggtactgc atttcgcctc gaatattcgt ttgctaacaa      5880
     tctaataatg cgaggaacaa agctagtcat cccaaagtcc ttaagacaaa gaatgtgcca      5940
     gttagctcac gaaggccatc ctggtcagtc tatgatgaag cgaagattgc gcgatcgttg      6000
     ttggtggcct ggtattgatc aggacgccca taaagtttgc gaaacatgtg agggctgtag      6060
     actggtacaa attcccgatc ctccggaacc aatggcactt cgacaattgc cagttaaacc      6120
     atgggtggat attgcaatcg acttcttggg tcccatgcct accggagaat atgtgctggt      6180
     ggttatagat tactatagcc actaggggta ccgggggcag tatggacacc cgggcagaat      6240
     ggacacccgg ggcagaatgg acaccccctg tatctttgca taagcgaata cttttacact      6300
     ttcgatgcaa acaatatttc agttgcctgt cggaagagta aattatctac taaaatttca      6360
     gaaaaaatgt ttaaaacatt gattttaaac cgaaaaattg agcatgattt tatttggttc      6420
     gaaaattata acattcacac ctcaccaaat aaggttttag aggcgaatga cttcaagttg      6480
     accgataatg ttgctcttga tggaaccttt aattatttat gctatattca aaaatatagt      6540
     agattttttt ctggtacttt aagactataa aaaacttata tgaaaatttc ttatacggtt      6600
     ggggcaatat ggacaccggg tgacaaagta gagcttacac ttcaaagaga aagaaataaa      6660
     tcttcaaaca caaaattttc caaaaaatat ttagcattta atgcaatgat tatgatgcgg      6720
     aaccacaaat cggttgaaaa tcgtcaattc ttgattaaaa ctaacctgga ggcaatattg      6780
     aaagcatctc tacgaaaaat gttgtaaatt gattttaatc atgttttcag tggcacagtg      6840
     acctgtcact acggtttcct gaatatgtac tttatttttc gaggttttga gaacgatcgc      6900
     gggacaattt tcctataaac attaaggtgt ccatactgcc ccatgggggt gtccactatg      6960
     ccccgctagc ttgatggcga ctaccaaata tgagcttttt taaaaccttt ttttgaaaac      7020
     aaaatatctt tttcctaatt ttgcaaccat gtttaacatt tgttaaacat ggttaagaac      7080
     ttttaaaagc atactgcaca taaaaaacag tataatattc atgtctttac agtaaaacta      7140
     ggcaaagtcc ttagggtgtc catactgccc cgtgtccccc tatatgaaat tggaaattat      7200
     gcacaaaata actgcttctg aaacgatcaa acgactgaat agaatttttc gaatctgggg      7260
     tccaccaagg acaataacat tggataatgc gaaacaattt gtttcagtcg aattcgaaga      7320
     attctgtaca aacaacggag ttcacttgaa tcatacttcg ccgtattggc cacaagccaa      7380
     cggcgaagta gaacgtcaaa atagatcatt gctgaaaaga atgcgaattt ctcacgcgtt      7440
     gtacggcgat tggaaagcag aacttcatca atatttgcaa ctctacaata atactccaca      7500
     cacagtcaca ggtgtatcac cgaatgaact attgcaaaac cgaaaactac gtaccaaact      7560
     gccacaaatt gatgatcttg aaactacgcc accttgtacc gacttcagag atcgagactg      7620
     ggagcatacg actttaggaa aagagcggga agatgcctag cgtaaagcaa aggtcagcga      7680
     attaaccgtt ggtgatactg tcataatgaa aaacctgcta ccaactaata agctttctac      7740
     gaatttcttg aatgagaaat ttactgtgat tgataagcga ggttccaacg tcacagctcg      7800
     atccgatgtt tctggaaaaa catttgatag aaatgtatca cacttcaaac tgatcccagt      7860
     tacagacgga ggtgctgcta caaatgagtt agacttgtcg aaaaataaaa aacgatcaaa      7920
     cgaaacatgt aatgcaggta aagttgggat atcaagaata tttgggattc tgggttcgtc      7980
     aaatttataa ctttttagga aaacagattg aatcgaatgt ggatacaaat attgaattgc      8040
     gaccatcctc attattgtca cctggaatgg gcgtacggag atcgaaacga cttttgagac      8100
     ccccggagaa attcagttca tcgagctaag tataagcaat ttcaaatatg ttgttttgaa      8160
     ttatgaaaac aataactgga atcttctatc attcaattgt gcaatattga atataaacat      8220
     tgaaaagatt acatagtaaa tattataaca ttatactctc ttcaggaaaa agggga          8276
//
ID   Gypsy-289_AA-LTR repbase;    DNA;    INV; 175 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-289_AA_;
KW   Gypsy-289_AA-I; Gypsy-289_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-175
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2681-2681 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 175 BP; 38 A; 32 C; 41 G; 64 T; 0 other;
     tgtggtagat gcttctattt agatgtgtta atgattatcg gattatcaat ggtatgtgta        60
     gcacgcttcg cccttcaatt agttagtctt tcttcagcgt ctgtatggta tggttcagtt       120
     gcctatgaca gtcttcgcag cgcgagttcg atcgttaata aaggtcgtta ccaca            175
//
ID   Gypsy-28_AA-I repbase;    DNA;    INV; 4848 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_AA_;
KW   Gypsy-28_AA-LTR; Gypsy-28_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4848
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions  749281  754128.
XX
CC   Positions [3860-4321] - Integrase core
CC   'TACCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           803..2314
FT                 /product="Gypsy-28_AA-I_1p"
FT                 /translation="MMKNGKKDLLLHYAGSNVQQLFDTLPEVPGTEMRGPL
FT                 LNIEHYTPNMTSYEEARAKLNEFFLPKENSTYERHLLRQLKQQAGENIDAF
FT                 TIRLPVQAERCGFGDRVEENIKDQIIQNCQSAMLRCDLLKRGDASLEEVLS
FT                 IAKIFETVAQQEKSFVSGSESKPDVDVNRIDTTPYGKRRRISDLKQLECHR
FT                 CGYFGHIAKDDRCPAKRKVYNKCGGKDHFAKKCRTKYPISQHARTDGNEKI
FT                 QPHGIGRSNKIDRKDDETHTVKHIVDEHVEYVFHLTTPDGNGEVQCKIGGV
FT                 STYAVIDSGSKYNLLSQSNWEQLKDKKVIVSNQRREAQMVFKAYGGQSLPL
FT                 IGVFTATVKLGNARNSAEFIVVKGNGKILIGRDTATAMGVLKIDIPVNEVE
FT                 FGAKSKKLGTIKDILVDIPIKADAVPVLHQGVIEPVNEPAKWISPVVVVPK
FT                 GDKDVRICVDMRRANEAVERENHPLPTFEDFLPHLAKAKVFSRLDVRNAFH
FT                 QVCHPCFE"
FT   CDS           3719..4804
FT                 /product="Gypsy-28_AA-I_2p"
FT                 /translation="MTIMKQRLRAKVWWPKLDKQVERYVRSCRGCMLVAAP
FT                 SAPEPMKRRALPSGPWQHVAIDFLGPLPSGHYLFVVVDYFSRYIEVEIMTK
FT                 TDSGETIKRLNSIFARFGLPMSITADNGPQFSSEEFRIFCASSNIKLISTT
FT                 PYWPQQNGEVERQNRSLLKRLTISQATNADWIEELNKYLLMYRSSPHSTTK
FT                 KTPSEMLSGYNIRDRLPSIYQPKDDDEETADRDKIAKEKGKLYADERRSTK
FT                 PSPISEGDNVLLKKMAKTNKLTPNFEPNVFKVLKRKGGDVIVSSEESGAKY
FT                 RRHVSHLQQILSDDDTLSIPEEADDTPTPDSSLSKESRSEDLTRKQVRGLK
FT                 RVIRKPAYMRDYVQAVKTD"
XX
SQ   Sequence 4848 BP; 1496 A; 908 C; 1184 G; 1260 T; 0 other;
     ttttggcggc gagaataaaa aaaaatggcc agctcatttg gtaagtaatt gatattcaaa        60
     attcttatat ttggaattta ctcggaagag gaaaaaaaga ctttgaagag taaacagcaa       120
     aatcaaaatt ggcttaaatg cggaaacatt atgtcggatt atgagttaat atgcgttgaa       180
     gcagataatt ggttatggta cagatgctta aatgcagtga gtcgaaacct gttttgcgaa       240
     agagcaagga atgtttgcaa gatggtcgct tcaatgcgga gataaaaaaa aaaacatctg       300
     attgatctat aaagaaaagg gcaatgattc tcaaagtgag cagcctatat ggtagtattg       360
     gtataagacg acaaaggtac gatgcacatg atctgccagt gagcgagccg tatattttgc       420
     actggggcaa acgtaaccaa tactgatgca cacgaaaact gacagatgat ttgacaagaa       480
     gacgacgagg ttgaaagttg gacagaaagt gttattttga agaaagactt gtttacagtt       540
     ccttttctgt tctgcaattg caaatcgtaa aaagtatgta aacagtgtga ttaattaata       600
     tttattgaga cctaaaaagt tgaaaactga taagtttaag gaaatgctaa agttgccgtg       660
     tttggatctt tttcagacat gatacgctca ctcggattgc agctgcaacc gtttgattat       720
     gccacccaca cggacaatgt gggcattgag tggcgaaagt ggttaagatc gtttgagaca       780
     atgatccgcg cgagtcggat tgatgatgaa gaatggaaaa aaggacttgt tgttgcatta       840
     cgctggatcg aacgtccagc agctatttga tacgctacca gaagtacctg gaaccgagat       900
     gcgtggtccg ttgctgaaca tcgaacatta tacaccgaac atgacgagct acgaagaggc       960
     tagagcgaag ctgaacgagt ttttcttacc gaaagagaat tcgacctacg agcggcattt      1020
     gctacggcag ttgaaacaac aagcgggtga gaatattgac gcctttacta tcagactgcc      1080
     agtccaagca gagcgttgcg gctttggcga tagggtagag gagaacatta aagaccagat      1140
     cattcagaac tgccagtcag ctatgctacg ctgcgatttg ctgaaacgag gagatgccag      1200
     tcttgaggaa gtgttgagca tcgcaaaaat ttttgagact gttgctcagc aagaaaagtc      1260
     ttttgttagt ggaagtgaat caaaaccaga cgtcgatgtt aacaggattg acactacacc      1320
     ctatggaaaa aggaggagaa tcagtgattt aaagcagctt gaatgccatc gctgcgggta      1380
     cttcggacat atcgctaaag atgacagatg cccagcaaaa cggaaggtgt acaataagtg      1440
     cggcggcaag gaccattttg ctaaaaagtg tcgcaccaag tatccgatca gtcaacacgc      1500
     aagaacggat ggaaacgaga aaattcaacc acatggaatc ggtcgtagca ataaaattga      1560
     tcgcaaagat gacgaaactc acacggtgaa gcacatagtc gatgagcatg tggaatacgt      1620
     cttccattta accacacctg atggtaacgg agaagtgcag tgtaagattg gtggtgtaag      1680
     cacatatgct gtaatagact caggatccaa gtacaatctg ctcagtcagt cgaactggga      1740
     gcaattaaaa gataagaaag tgattgtatc gaaccaacga cgggaagcgc agatggtgtt      1800
     taaagcttat ggagggcagt cgttgccact gattggtgta tttaccgcta cagttaaact      1860
     gggcaatgcg cgtaattcag ctgaattcat cgttgttaaa ggaaacggta aaatcttgat      1920
     tggtcgcgat actgccacgg caatgggtgt tctaaagatc gacatacctg tgaacgaagt      1980
     ggaatttggt gcgaaatcca agaaactagg aaccataaag gacatcttgg tggatattcc      2040
     gatcaaagcg gacgctgtac cagtgcttca ccagggagtt atcgagccgg tgaacgagcc      2100
     ggcaaagtgg atttctccgg tagttgtggt gccgaaggga gataaagatg tacgcatttg      2160
     cgtggatatg cgacgcgcga atgaagccgt ggaaagagag aatcaccccc ttccaacgtt      2220
     tgaagatttt ctaccgcatt tggcgaaagc taaggttttc tctcgtttgg atgtgagaaa      2280
     tgctttccat caggtatgtc atccttgttt tgagtaattt cagtctgaat tgacacgttt      2340
     acgtttaccg atgtgcaaac aattgatcat aattgaattc gatttatttt tttatttttt      2400
     tctcgatgca ctacctgaga tttgttttac aataaaactg tcagttgttg acttcaataa      2460
     aagagatttc aaactttgga aaattgagct agtttgtttt attttaggtt gaaatttcta      2520
     aacgatcgcg tgaaattaca acatttatca cgcgcagagg cctgtttcgc tataccagac      2580
     taatgtttgg tataaactgc gcgcctgaac tattccaaaa gaccatggaa caagttctta      2640
     gtggttgtga aggttgttta attttcattg acgatgtcat agtgcatggc tctgacaagg      2700
     aagcgcacga catgaggctt aaaatgattc ttcggcggct agatgactgg aatgtgacga      2760
     tgtgactcta aatgatgata aatgtatgta tgggtgtctg aaatgaagat tttgggacat      2820
     attctctcgg cggatggaat taaacccgat tcagataaac tggaatccat tcggcgcttc      2880
     cgcgaaccaa aatccggaga agaggttaga agctttttgg gtctggtgaa ttaccttagt      2940
     aagtttattc ccgatcttgc gacactaacg tatccactac ggcaactaac ggttcagaag      3000
     caatgttttg tctggggagt ggagcaacaa acagcatttg aaaaactgaa ggaacatatg      3060
     actcgtccga cgacgcttgg ttactttgat gtttcggatc gcacacaatt ggtggctgat      3120
     gctagcccag ttggtttagg aggtccttat tcagataaat aaaacaggcc agcaaaagtc      3180
     tttcagacta gctctcgtgt gggcggttga gcgctttcac ttttatttgt acggtcgttc      3240
     gtttgaactg ataaccgatc acaaaccgtt ggaaactatt ttcggatcaa gatcaaaacc      3300
     atgcgctaga atcgagaggt gggtagttcg gctgcaatca tataaggcaa cagttgttta      3360
     ccgcccggga aaatcgaata ttgctgaccc gttgtcccga ttagcagtta cgggtagcac      3420
     gactggaaaa actttcgacg aatatgctga gcattatatt gcatgggttg cttcaaatgc      3480
     attaccggta gcgattaaaa tttcagaaat agagaaagct tcagattccg acaaaataat      3540
     tcagtcgatt cgagttggta ttgaccaagg tgtttggtca gaagatgcgg atccatttaa      3600
     aatatttgct acggaactat gctttgctga taagattttg ttgcgaggaa ctaggatagt      3660
     gataccagaa accttgaggg agcgaacgtt aggcttggct cacgagggtc atcctggcat      3720
     gaccatcatg aagcaacggt tgagagcgaa ggtatggtgg ccaaaactgg ataagcaggt      3780
     tgagcggtat gtcaggagct gtcgtggatg catgctggtc gcagccccat ctgcaccgga      3840
     accaatgaaa cggagagcgt tgccatcggg tccatggcaa catgtagcca ttgattttct      3900
     cggcccgctt ccttcagggc actatttgtt tgtagttgtt gattatttca gccgctacat      3960
     agaagtcgag attatgacaa agactgattc tggcgagact atcaagcgtt tgaattcgat      4020
     tttcgcacgg ttcggcctcc ctatgtccat tactgctgat aacggtcccc agttctccag      4080
     cgaagaattc cgtatttttt gtgcctctag caatatcaaa ctgatcagta cgaccccgta      4140
     ttggccacag cagaatggcg aggttgagcg acagaaccga tctctgttga aaaggctgac      4200
     gatcagtcag gcaacaaatg ctgattggat cgaagaatta aacaaatatc tgcttatgta      4260
     tcgctcatcc cctcactcaa ctacgaagaa aacgccatcg gaaatgcttt ccggctacaa      4320
     catacgggat cggctgccat ctatctacca accgaaagat gatgatgaag aaactgctga      4380
     tcgagacaag attgcgaagg agaaagggaa attgtatgcc gacgaacgcc ggagtaccaa      4440
     accaagtcca atctccgaag gtgacaatgt tctgttaaag aaaatggcaa agacaaataa      4500
     gcttacgcca aattttgaac caaatgtttt caaagtctta aaaagaaaag gcggagatgt      4560
     cattgtatct tcagaagaat ccggcgcaaa ataccgcaga catgtttctc atctacagca      4620
     gatcctcagt gacgatgata cactttcgat tcctgaagaa gcagatgaca caccaacccc      4680
     agacagttcg ttgagcaagg agagccgttc agaggatttg actaggaaac aagtacgtgg      4740
     acttaaacgg gtcatccgaa agcctgctta tatgcgagac tatgttcaag cggttaaaac      4800
     tgattagagt gccgagaaac taaatttata taaaaaagag aaagtgaa                   4848
//
ID   Gypsy-28_AA-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   supercont1.6;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_AA_;
KW   Gypsy-28_AA-I; Gypsy-28_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-192
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.6; Positions  749089  749280.
XX
SQ   Sequence 192 BP; 63 A; 32 C; 34 G; 63 T; 0 other;
     tgtagtgttt taaactaaac taatgtaata cctccttaat aatgatcttg tcgtaaagca        60
     tccattttat atactatgga tacatgttag atgtatgggg gagagtatac tcgaggagac       120
     aataaagggc attcgtattc taactagtaa cctgacttca cgtgttttac tccagcttac       180
     gaaaatacta ca                                                           192
//
ID   Gypsy-28_AnFu-I repbase;    DNA;    INV; 4719 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4719
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2913-2913 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           238..4620
FT                 /product="Gypsy-28_AnFu-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEEAIQSMQAQIAFLTQKVEQQEISQSSVASVDNAIK
FT                 FTKLPDTLKYLPEFTGNTNTILTWIETVERTLTLCNGSEDSIVYQMWLGHV
FT                 RNRIVHKANRILLNKNCPLNWTLMKEALLEHFLDGRDLGTLTSEISRLKQH
FT                 NLSLAMYYDRCETLFCEIRTIISMDKQNFGHESAIMRVMELMIKNAFVEGL
FT                 NGDYSKFLRASKPDSLKDAYKLAEELFSTDKKNMKKAHFETTPFQLKQRYQ
FT                 TQTQPKIEKMDVDSSTRQVRHNNSSGYKTSNYKPQNFFQSNGPPRFKVEEL
FT                 SNVNHSDSNSIDDLNFSLIESNKSENFDNFIPYIKLRNSFGTEMKFLIDTG
FT                 ANKNYIRVSLAKSMNWRRVTPVTVRSVHGLYKVDKYVSFNPFPKIPSSQDF
FT                 KFFIFDFHPFFDGLIGYETLRKLQAKIITTENVLEVSGLKIPMFKKYSEFQ
FT                 SVTLEPNKYQIIGIKTRFDNGDFYIEKEKEIFPSVFILPGVYKSNNHVANV
FT                 VICNNNESKITCDLEKAFEFECNNFEIPLHADTQAHNLSNRCDDLLLKAKI
FT                 DHLNPEEKTKLEKLILSFRDIFFVEGNKLSFTNAIKHRINTTDDIPVYTKS
FT                 YRYPYCHKEEVQHQIDKLLEQGIIRPSNSPWSSPIWIVPKKGTVKGVPKWR
FT                 LVIDYRKVNQKTVSDRYPIPNITEILDKLGRSMYFTTLDLASGFHQIEVYE
FT                 KDIPKTAFSVDNGHYEFVRMPFGLKNAPSTLQRVLDNILKPHIGKQCLIYM
FT                 DDIIVFSTSLQEHLINLREIFESLKKYDLKIQLEKTEFLRKEVSFLGHIVT
FT                 PEGVKPNPEKISAIQNWPIPRNEKNLKAFLGVIGYYRKFIKDFAKITKPLT
FT                 TQLRKGESLDVTKEYISAFDRCRQILSSSQILIYPDFEKPFILTTDASKFA
FT                 IGAVLSQGSIGKDKPIAFASRTLNKHEENYSTIEKELLAIDWACKYFRPYL
FT                 YGRKFVLYTDHKPLTYAMNLKDPHSKLIRYKLRLEEYDYEIRHKPGKQNVV
FT                 ADGLSRLKQMDEINNSSMTAHSGLSDNSHRIQMTELPLNFFKNQIVLELND
FT                 SSEEMHQEIFPHVFRRTIKKAEFDISDLISIFRNNLHSSQITCIFCSVSMI
FT                 QKLQEVFDSYFSQMNPSKIRISQCILQDLTTPEEQNEAIEKIHDRAHRGIE
FT                 ENYNVMIQKYYFPKMKDKIRSFINFCKICLSNKYERHPYKIKFAFTPIPKK
FT                 PLDIFHIDIFISKPNLFLTAVDKLSRFAIIIPLKSRSIVDVKRSLVKLLTT
FT                 YGTPKMVVCDNELAFKSIEIRELLQKLEVDVHYTPSNHSEENGIVERFHST
FT                 LTEIFLCIKGKYNDLTYKEIYKIATTLYNSSIHNATKLKPVEVFFGIKEND
FT                 ERPLEMDKMLEDRNKLFDDVMLQLQKYQHKSIEKQNVKRKNEPTFEENESV
FT                 YNKRQGIRDKRKAKFNKVTVRQNRRKTFVDSRFIRLHKCNVKRKRKI"
XX
SQ   Sequence 4719 BP; 1753 A; 791 C; 864 G; 1311 T; 0 other;
     ggcgcagtcg gcacttcgca cggaatcgag aaaactataa aattcggaca tccagcacat        60
     ccattgcggt tcagttggtg aggaattaaa aagacgattc tcgatcatcg aaggagagct       120
     tcgagcaacc ggtaaaaccg tccttggagg taaaccagtg gatttgtgct gctcgaagag       180
     aaacacgtgt tcccaatcgt tcaactgtgg tagtgatcaa aagtgaaaaa aggaacaatg       240
     gaagaagcaa tacaaagcat gcaagcgcaa attgctttcc ttacgcaaaa agtggaacag       300
     caggagatta gccaaagttc agtggcatca gtggacaacg ctattaaatt tacgaagctt       360
     cctgacacgt tgaagtattt accggaattt acgggaaaca ccaataccat cctaacgtgg       420
     atagaaacgg tcgaaagaac attgacacta tgtaacggat cggaggatag tattgtgtat       480
     caaatgtggt tagggcatgt gaggaacaga attgttcata aagcaaatag gattttgcta       540
     aataagaact gtccacttaa ttggacgctt atgaaagaag cgcttttaga gcatttccta       600
     gatggaagag atttaggcac tcttacgtca gaaatttcga gattgaaaca gcataacctg       660
     tctctagcaa tgtattatga tcgctgcgaa acactgtttt gtgagatacg aacaattatt       720
     tcgatggata agcaaaattt tggtcatgaa agtgcgataa tgagagtaat ggaactaatg       780
     ataaaaaacg catttgttga aggactaaat ggagattatt ctaaattttt gcgagcaagc       840
     aaacctgatt cgttgaaaga tgcgtataaa ttagcagagg aattatttag cacggataaa       900
     aagaatatga agaaagccca ctttgaaaca accccatttc agttgaaaca aaggtatcaa       960
     actcaaaccc aaccgaagat agaaaaaatg gacgttgatt catctacgag acaagtaagg      1020
     cataacaaca gttcaggtta caaaacatct aactataaac cacaaaattt tttccaatca      1080
     aatggcccac cgcgttttaa agtagaggaa ttatcgaatg taaatcattc tgatagtaat      1140
     agtatcgatg atttaaattt ttctttaatt gagagtaata aatcagaaaa ctttgataat      1200
     ttcataccat acataaaact gcgtaatagt ttcggaacgg aaatgaaatt tttgatcgat      1260
     actggtgcga acaagaatta tattcgtgtt agtttagcca aatctatgaa ttggcgtcgt      1320
     gtaacaccag taacagttcg cagtgtgcat ggattgtata aggtggataa atacgtgtcg      1380
     tttaatccat ttccaaaaat tccttcatca caagacttta agttctttat ttttgatttt      1440
     catccttttt ttgatggttt gataggttat gagactttaa gaaagctcca agctaaaatt      1500
     ataactacag aaaatgtact tgaagtatct ggtttaaaaa tacctatgtt taaaaaatat      1560
     tccgagtttc aaagcgttac gttagaacct aacaaatatc aaattatagg gataaaaaca      1620
     cgttttgata atggcgattt ttacatcgaa aaagaaaaag aaatatttcc tagcgtattc      1680
     attttacccg gtgtatacaa atcaaacaat catgtagcca atgtcgtaat ttgcaacaat      1740
     aatgagtcga aaattacatg cgatttggaa aaagcttttg aatttgaatg taataacttt      1800
     gagattcccc ttcatgctga tacacaagct cataatttat caaacagatg cgatgattta      1860
     cttctcaaag ctaagatcga tcatttgaat ccagaagaga aaacaaagct agagaaatta      1920
     attttgagtt ttcgagatat tttctttgtt gagggaaaca aattatcttt caccaatgcc      1980
     attaaacatc gcataaatac gacggatgat ataccggtat acacaaaatc atatcgatac      2040
     ccatattgtc ataaagagga ggtacagcac caaattgaca aactgttaga acaaggcatt      2100
     attcgaccat ccaatagtcc atggtcttcg ccaatctgga tcgtaccaaa aaaaggtact      2160
     gtaaaaggtg taccgaaatg gcgacttgta atagattata ggaaagtaaa tcaaaaaacc      2220
     gttagtgatc gctatcctat ccccaacata acagaaattt tagataaact tggcaggagt      2280
     atgtatttta ctactcttga ccttgcctct ggttttcatc agatagaggt ttacgaaaag      2340
     gacatcccta aaacggcgtt tagcgttgac aatggtcatt acgaatttgt tagaatgcca      2400
     ttcggcctaa aaaacgcgcc gtcgacatta caaagagtac tagataacat ccttaagcct      2460
     cacatcggta aacaatgtct catatacatg gatgacataa tagtattctc gactagccta      2520
     caagaacact tgataaattt gagggaaata tttgaatcgt taaaaaagta tgatcttaaa      2580
     attcagcttg aaaaaacaga atttttacgt aaagaagtat catttcttgg ccatatcgtt      2640
     actccagagg gcgtaaaacc taatcctgag aaaatatcgg caatccaaaa ctggccaatc      2700
     cctcgaaatg aaaaaaatct caaggctttc ctaggagtaa ttggttacta caggaaattc      2760
     attaaggatt tcgctaagat tacaaaacca cttactacac agttacgaaa aggagaatct      2820
     ttagacgtaa ctaaagagta catatctgct tttgatagat gtagacaaat actaagcagc      2880
     agtcagatct taatttatcc cgattttgaa aagccgttta tactcactac agatgcatct      2940
     aaatttgcaa ttggtgcagt tttgtctcaa ggaagtattg ggaaagataa accaatagcg      3000
     tttgcctcac gaaccctcaa caaacacgag gaaaactatt caacaattga aaaggaatta      3060
     ttagccatag attgggcatg taaatatttt agaccatatt tgtacgggag gaaatttgtt      3120
     ttgtatacag atcacaaacc gctcacatat gcaatgaatt taaaggatcc gcacagcaaa      3180
     ttaataaggt ataaacttag attagaggaa tatgactatg agatacggca taaaccagga      3240
     aagcagaatg ttgtcgcaga tggattgtcg cgactaaaac agatggatga gataaataat      3300
     tcaagtatga ccgcccactc aggcttaagc gacaatagtc atcgtattca aatgactgaa      3360
     cttccattaa attttttcaa aaatcaaata gttttggaac taaatgatag tagtgaggaa      3420
     atgcaccagg aaatattccc gcacgttttt cgtcgaacta taaaaaaggc tgaatttgat      3480
     atctcggact taatttcaat ttttaggaat aatttgcatt catcacaaat tacatgcatt      3540
     ttttgctctg tttcaatgat tcaaaaatta caagaagttt ttgactcata cttttcacag      3600
     atgaatccct cgaaaataag aatctcacag tgcatactac aggatttaac tacccctgag      3660
     gaacagaatg aggcaattga aaaaattcat gatagagcac ataggggaat tgaagaaaat      3720
     tacaacgtga tgatacaaaa gtattatttc ccaaaaatga aggataagat tcgttctttc      3780
     attaattttt gcaaaatctg ccttagtaac aaatacgaac gacatccata taaaatcaaa      3840
     ttcgctttta ctcctatacc aaagaaacca ctggatattt ttcacataga tattttcatt      3900
     tctaaaccga acttattttt aacagcagtc gataagctgt cacgttttgc aataatcatt      3960
     ccgctaaagt ctcgttccat agtagatgta aaaagaagtt tagtgaaatt gcttacaacc      4020
     tatggaactc caaaaatggt ggtgtgtgat aatgaattag cttttaaatc aatagaaata      4080
     agggaattat tgcaaaaatt agaagtagat gttcattaca ctccttcaaa ccacagcgaa      4140
     gaaaatggaa tcgtggagag gttccattca accttaacag agatctttct ttgtattaag      4200
     ggaaaatata atgacttaac ttataaggaa atttataaaa tagcaaccac cctatacaat      4260
     tccagtattc acaatgcgac aaaattaaaa cctgttgaag tattttttgg tataaaagaa      4320
     aacgacgaaa ggccacttga aatggataaa atgttggaag ataggaataa attgtttgat      4380
     gatgttatgc tccaactgca aaaatatcaa cataaaagca ttgaaaaaca aaatgtgaaa      4440
     agaaaaaatg aaccaacttt cgaggaaaat gagtcagtct acaacaaacg gcaaggaatc      4500
     agggataagc gaaaggcaaa gtttaacaaa gtaaccgtaa gacaaaatcg aaggaaaaca      4560
     tttgttgata gtaggtttat caggttacat aagtgtaatg ttaaacggaa acggaagata      4620
     tgatgaatgt tagctaaaca caacacactc agaaaaaatg tacacggcat acagttagac      4680
     tcgatcaagc gaggacgctc gatcttctac ccccggaga                             4719
//
ID   Gypsy-28_AnFu-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-202
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2841-2841 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, often in (TA)n
CC   microsatellites.
XX
SQ   Sequence 202 BP; 56 A; 41 C; 45 G; 60 T; 0 other;
     agttataact ggtatagtac tactggagag taccgtacca agttatatac gtagtatttt        60
     cactcggtca gtctctccgg tcatggtaga gactgatcga cagcatccgg ctcgctctct       120
     tctgttcgga ccgtcaaacg atacacatcg agatgattag gagctcatca taagtatatg       180
     tgtgtgtgaa taaagtataa ct                                                202
//
ID   Gypsy-28_AnMe-I repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4552
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6840-6840 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..4521
FT                 /product="Gypsy-28_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTEEVRIAILVEEFTRCGLIKRCQEKGLPITGTKEEM
FT                 ARLLVENQEVQAELDVSSTERYQDAVLGEVASGQSATAIPKLEPVVETSSP
FT                 YFFRDVEEGIEAYSADGSRDLTAWFVEFEEISSLARWSDEHKFIMCRKKLT
FT                 GVAKSFLATLRGVTTYAALKRALLAEFATVVRASDVYRQLASRKKRKDESA
FT                 LEFIYSMQKLAQSIDIEEEDLCEFIVDGFSSDETTRAILYEATTISQLKKK
FT                 IALRERADTKSEDKKKRPFVEQMSKQHKDTPNTRKPKCYNCGQLGHVATSC
FT                 VERKRGVKCYGCGVYGHKASECEKKQTTNAGTHLVTESNDTMVIIEFGDCV
FT                 LHALFDSGSGYNIISNKAFQRIGSPPLENTFVTFNGFGGTQTKAIGRIFVD
FT                 VCVCAVSYKNVPFFVVPDGTMVYDALLGRESLQFFNVEVTIDGVKLVPRSD
FT                 EKEQVAESNVFLADVFSTSTDPRIIVPSVYEEQISALIEKHCVNDEQQPPK
FT                 ESPITMRITTNEGAVPFRQSPRRFSPPENEIVEQQIEQWLEQGVIQKSSSD
FT                 FASRVVIVKKKNGKYRLCVDYRKLNSIVLKDGFPIPVIDEVLEKLQKARYF
FT                 TVMDLTNGFFHVPIEESSRKYTAFATKTGLYEFKRAPFGFCNSPAVFIRFV
FT                 NTIFQSLINQNVLDLYMDDIVIHGVTPEECFNKMELVFDKIREYGLKVNWE
FT                 KCEFLQQSIVFLGHRVEKGTISPGEDKIRAVKNFSLPKNVKAIQAFLGLTG
FT                 FFRKFIKNYAIIARPLTDLLKKDVEFNMRQTEIEAFQKLKQLLIKEPILRL
FT                 YDRDAETEVHTDASKYGFGAVLLQKFDGKFYPILFWSKKTTPGESNQHSYI
FT                 LEAKAIFLAVKKWRHYLLGIKFKIITDCIAFKQTIKKDDTPREVTQWVMFL
FT                 QDFDYEVEHRPGERLRHVDCLSRYPEENVLVISEVSAIIKKQQLKDDSLKA
FT                 ITEILKERPYGSYKMKENILYKTVEGIDLLVIPKSMEKQIIVDAHNVGHFG
FT                 NTKTMHNIKQLYCIPHLEYKVKQVIESCVKCILHNRKLGKKEGLLNQIDKG
FT                 NSPLQTIHLDHIGPMDATAKQYKYILTVVDAFSKFVWLYPTKSTGTEEVIL
FT                 KLNSWSEIFGNPERIITDRGSAFTSNNFMDYLKNRQIEHVINTTGVPRGNG
FT                 QAEIVNKIVLSTLAKLSSDEPSRWYKSVGLVQRAINSNVHATTKRTPFFAL
FT                 FGTTMRNGDEKQLQKIIQEELYERFDNDRTEIREQIQKEIRRAQTIQKQNF
FT                 DKTRKEAVEYNIGDLVAIKRTQFVAGRKLANEYLGPYEVIETKRNDRYKVK
FT                 RAANCEGPNITSSSADNMKLWSYAVENDLLDECDEEIP"
XX
SQ   Sequence 4552 BP; 1529 A; 744 C; 1102 G; 1177 T; 0 other;
     tttgggggct cgtccgggat ttgagattga ttgtggaatg aggattacgt tatcaggatt        60
     gattgtgaat ccgaggattg aagtgctgat cgcgacgcta atgaagaggc ttttctgtgt       120
     gtgaaagcat tgacgctgag tgcgatgtga aaacgctgag tgcgatgtga aaacgctgtg       180
     tgcgagtaaa actgctgagt gcgatacgct gagtgcgaaa cataaaacgt tgtgtctttc       240
     ctgtgtgtga aagaattaat gctgagtgcg atacgctgag tgcgaaacat aaaacgctgt       300
     gtgcaaaacg ttatgctgtg agcatcgtgg tttgatgcac agataagaaa actgctgtgt       360
     gcggaagtat atggtgaatg cgtacagaaa gcgtgtgtca caatatcaca aataattgag       420
     tgcgaacgcg atattcaggt gcaagtgtga ataataggta cacgtgtgac aatgacggaa       480
     gaagtgcgta ttgcgatatt ggtagaagaa tttacacgct gtggcttaat aaaacgttgc       540
     caagaaaagg gattaccgat cacgggaaca aaagaagaaa tggcacgttt gcttgtggag       600
     aaccaagagg ttcaagccga actcgacgtg tcctcgacgg aacggtatca ggatgcggtg       660
     ttgggggaag ttgcatctgg acagagtgca acagccatac caaaacttga gccggtggta       720
     gaaacttcgt cgccctactt cttccgtgac gttgaagaag ggatagaagc atacagcgca       780
     gatggttcta gagaccttac cgcttggttt gtagagtttg aggaaatctc tagtttagcg       840
     cgctggtctg atgagcataa gtttattatg tgtcggaaga aactgaccgg tgtggccaag       900
     agctttcttg ctacattgcg cggagttacc acttatgctg cgctgaagcg agcattatta       960
     gccgaatttg caacagtagt aagagcgagt gatgtctatc ggcaattggc ttcgcggaag      1020
     aaaaggaaag acgaatcagc gcttgaattc atttattcga tgcaaaaact cgcgcagtct      1080
     atcgatatcg aagaagaaga cctttgcgaa ttcatcgtgg acgggttttc gtccgatgaa      1140
     acaacaaggg cgattttgta cgaagcaaca acaatttcgc aactaaagaa aaaaatagcg      1200
     ctgcgagaac gggcagacac aaaatcagag gataagaaaa aacggccctt tgttgagcaa      1260
     atgtctaagc agcacaaaga cacaccaaat acacggaagc ccaagtgtta caattgtggt      1320
     cagctggggc acgtggccac cagctgtgtc gagcgaaaaa ggggcgtcaa gtgttacggg      1380
     tgcggtgtgt acgggcacaa agcaagtgaa tgcgagaaga aacaaacaac caacgcgggt      1440
     acacatttgg tgacagagag caacgataca atggtaatta ttgaatttgg cgattgtgtt      1500
     cttcacgctt tgtttgacag cggcagtggt tataatataa tttccaataa agcattccag      1560
     agaataggct ccccgccttt agaaaacacg ttcgtgacgt tcaacggttt tggcggtaca      1620
     caaacaaaag ccatcggacg aatttttgtg gatgtgtgtg tgtgtgccgt atcatacaaa      1680
     aacgttcctt ttttcgtggt gccggatgga acgatggttt atgacgcttt gttaggaaga      1740
     gagtctctac agttttttaa cgtcgaagtg acaatagatg gtgtaaaact agtcccacgg      1800
     agtgacgaaa aggagcaggt agcagaaagc aacgtttttt tggctgatgt gttttcaacc      1860
     tccaccgacc cgagaataat agtgccgagt gtttatgaag aacaaataag tgcgttgatc      1920
     gagaagcatt gtgtcaacga cgagcaacag ccgcccaagg aatcgccgat aacaatgcgg      1980
     atcaccacca acgaaggggc ggtgccgttt cgtcaatcac cgagacgttt ctctccgcct      2040
     gagaacgaga tcgtggaaca acagatagaa caatggctgg agcaaggagt gatccagaaa      2100
     tcgtcatccg actttgcgag cagagtggtg atcgtcaaga aaaagaacgg caagtaccga      2160
     ttatgcgttg attataggaa actaaattcg atcgtattaa aagatggttt tccaatccca      2220
     gtaattgatg aggtattaga aaaattacag aaagctaggt attttacagt tatggattta      2280
     acaaacggat tttttcatgt tccaatagaa gaaagtagta gaaaatacac cgcgtttgcc      2340
     acaaaaacgg gattgtacga atttaaaaga gcaccatttg gtttttgtaa ttctcccgca      2400
     gttttcatta gatttgttaa cactattttt caatcactaa ttaatcaaaa tgtattagat      2460
     ctgtatatgg acgatatagt cattcacggt gtaactccag aggaatgttt caataaaatg      2520
     gaattagttt ttgataaaat aagggagtat ggacttaaag taaactggga gaaatgtgaa      2580
     tttttgcaac agtcaattgt ctttttgggg catcgggtag aaaagggaac aatttcacca      2640
     ggtgaagaca agataagagc cgttaagaat tttagcctac cgaaaaatgt taaagctatt      2700
     caagcttttt tagggctaac ggggttcttt cgaaaattta taaaaaatta tgctattatt      2760
     gcccgaccat taacagattt gctaaagaaa gatgtagagt ttaacatgag gcagactgaa      2820
     atagaagctt tccagaaatt aaaacagtta ttgatcaagg aaccgattct tagattgtat      2880
     gatcgggatg cagaaacaga agtacacact gatgcatcga agtatgggtt tggtgcagtc      2940
     ttattgcaaa aatttgatgg aaaattttat ccgattttgt tttggagtaa aaaaacaacg      3000
     ccaggagagt caaatcaaca tagttacatt ttagaagcaa aggcaatttt tcttgcggtc      3060
     aaaaaatggc gccattacct attggggatt aaatttaaaa ttattactga ctgtatagca      3120
     ttcaagcaaa ccataaaaaa ggacgacacg ccaagggaag ttacgcagtg ggtaatgttt      3180
     ttgcaagatt ttgattacga ggtagaacat agaccaggtg aaaggttgcg tcacgttgat      3240
     tgtttgagta ggtatccgga ggaaaatgtt ctggtaattt ctgaggtttc ggcaattatc      3300
     aaaaaacaac agctcaaaga tgattcatta aaagccatta cggaaatatt aaaagaaagg      3360
     ccttacggtt catataagat gaaggaaaac attctttaca aaacagtgga aggaattgat      3420
     ttattggtta ttccgaaaag tatggagaag cagataattg tagatgcaca taatgtaggt      3480
     cattttggta atactaaaac tatgcataat ataaagcagt tatattgcat accacattta      3540
     gaatacaagg ttaaacaggt catagaaagt tgtgtgaaat gtattttgca taataggaag      3600
     ctggggaaga aggaaggtct gttgaatcaa atcgataaag gaaatagtcc tttacaaaca      3660
     atccacttag accatatagg accaatggat gctacggcaa aacaatataa gtatattttg      3720
     acagttgtag atgcattttc caaatttgtt tggctttacc caacaaaatc gactggtacc      3780
     gaggaggtaa ttttaaaact aaacagttgg tcagagattt ttggtaaccc tgaaaggatt      3840
     attacggatc gtggaagcgc gtttacttcg aacaatttta tggattattt aaaaaatcga      3900
     cagatagagc atgtcataaa cactacaggt gttccaaggg gaaacgggca agccgaaata      3960
     gttaataaaa ttgtgttgtc tactttggct aagctaagtt cagatgaacc gtcaagatgg      4020
     tacaagtcag taggattagt gcaacgagct attaattcaa atgttcatgc taccactaaa      4080
     cggacaccgt tctttgcgct tttcggtaca acaatgcgaa atggagatga aaaacaacta      4140
     caaaagataa ttcaagagga actatacgaa cgtttcgata acgatagaac agaaataagg      4200
     gaacagattc aaaaagaaat tagaagagct caaacaatac aaaaacagaa ctttgataaa      4260
     acgcggaagg aagctgtaga atataacata ggtgatctgg tagctattaa acgaacccag      4320
     tttgtagcag gtagaaagct agcaaatgaa tatctaggtc cttacgaagt aatagaaacc      4380
     aaacgaaacg atcgttacaa agtaaaaaga gctgctaatt gtgaaggtcc taatataact      4440
     agtagtagcg cagataacat gaaattgtgg tcttacgccg tggaaaatga tctactagac      4500
     gaatgtgatg aagaaatccc ttgagggcaa tggatggcca ggaaaggccg aa              4552
//
ID   Gypsy-28_AnMe-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-237
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6865-6865 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 237 BP; 84 A; 35 C; 64 G; 54 T; 0 other;
     tgtaagtttc tagaaggaga taggacgaaa gtaagaggaa cgaaacgagc gatgacaaag        60
     gacatcagga gaaagagaaa cgaagatatg agtgagcgag ataggagata ataggatagc       120
     cataaaaacg ggagcacgtg cggagtggtc agtcgcgatc ggtttgttgt atttaacacg       180
     tctaaataaa gaactatgaa ctcgtacatt cgtttcctcg tgttttcatt ccttaca          237
//
ID   Gypsy-28_CQ-I repbase;    DNA;    INV; 4445 BP.
XX
AC   AAWU01011844;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_CQ_;
KW   Gypsy-28_CQ-LTR; Gypsy-28_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4445
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 435-435 (2011).
XX
DR   GenBank; AAWU01011844; Positions   17509   13065.
XX
CC   Positions [3363-3881] - Integrase core
CC   'AAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..2071
FT                 /product="Gypsy-28_CQ-I_1p"
FT                 /translation="MDELKALLKNQNKLFEDLLKKQQAEPRAVAPGPHNVP
FT                 LPPPLSLEGDMDENYAFFEDNWNNYATAVGMGDWPEADNPKKVSFLLSIVG
FT                 PDALKKFSNFDLTQADRATPTTVLAAIKKKVTRTRNVIVDRLDFFSAAQSP
FT                 VESIDEYTSRLKSLAKPAKLGAVEAELITFKLATSNKWPHLRSKMLTMADL
FT                 SEAKAVDLCRVEEITAKHVQVLSADKLSEVNKLKASSSKARQCKFCGDWHA
FT                 FTKGSCPAYGKKCKLCSGKNHFEKVCRKNRARMSSSKRNSVRRVKKINDES
FT                 SEDSESDDEWSDQSGTETEIEGEIGKIFDNSKKGGNVLAEVSLKVKGKWKS
FT                 VKCKLDTGANTSLIGHDWLCKLTGESDPELQPSPFKLQAFGGGIINVMGQV
FT                 KLPCKCQNKKYILVLQVVDVSHRPLLSLKVCTTFGLIKFCNSVSMVPAKAT
FT                 PEGAQDLMRIYRIEAEKIVDEFGDVFRGYGKFDGEVTLEIDESVPPVIQQP
FT                 RQVPIALRPKLKAELDQLEKDGIIAREYSHTEWVSNILLVKRGIAGAESIR
FT                 ICLDPIPLNKALKRPNLQFVTLDEILPELGQAKVFSTVDARKGFWHVVLDE
FT                 QSSKLTSFWTPFGRYRWLRLPFGISPAPEIFQSQPAGDSPRIERGRVHSR"
FT   CDS           2103..4421
FT                 /product="Gypsy-28_CQ-I_2p"
FT                 /translation="MEEALRDHNANLKNLLSRLKLNHVKLNNSKLKLCETS
FT                 VKFYGHVLTTEGLQPDHTKISTIKHYPVPTSRTELHRFIGMVTYLSRFIPN
FT                 LSAAFTRLRRLISEKEPWRWTREEDEDFSKVKSLVSDITTLRYYNVREPLT
FT                 IECDASCFGLGVAVFQKDGIVGYASRTLTDTEKNYAQIEKELLAILFACVR
FT                 FDQLIVGNPQTTVKTDHKPLINIFNKPLLTAPKRLQHMLLNLQRYHLALEF
FT                 VTGKENVVADALSRAPHNDSTVRDEYQKLNIYKIFKQLEDCNVSGYLSISD
FT                 NCLDTIMKATEQDAALLTVIDFIRNGWPSTIDRVPSAAKIYFKYRSELSTQ
FT                 DGLVFRNDRILIPCALQRSMIDKVHVSHNGIESTLKLARENIFWPGMSAQI
FT                 TDVVKECHVCAKFAASQQKPPMQSHAVPIYPWQVVSMDVFFTSYQGKRHQF
FT                 LVTVDHYSDYIELDILKDMSARSLVETCRKNFARYGCPQIVVTDNGTNFVN
FT                 EEMKEMAIKWNFKHSTSAPHHQQANGKAEAAVKIAKRLIQKAEETDQDVWY
FT                 VLLHWRNIPNKIGSSPASRLFSRSTRCGVPASFEKYTPRIVQNVPEAILEN
FT                 KRKVKYYYDRKSRNLPALETGSPVYVQAHPEISKTWTPAIVTEKLNDRSYV
FT                 VDVNGASYRRDLTNLRPRKEPTTIPLVPAQSHPPTESSAAQTGADLTAEPE
FT                 ASSLAAMRFDETATTTTTSPVVNQSAAATPSVRERVSQLAAINTPGKQTTD
FT                 ATNRPTRERKIPSKFADYVLET"
XX
SQ   Sequence 4445 BP; 1188 A; 1164 C; 1230 G; 863 T; 0 other;
     tggtgtcaga agtttttgcg gcataaagtt cgagaaacgt tgagaatcgt cgggcatcgt        60
     acaacccggg atcgcgtgaa gagtcagtga aggaagcgat tcaaacttcc accgaaaatc       120
     cacaacaatg gacgagctga aggcgctgct aaagaaccag aacaagctct tcgaagattt       180
     gctcaagaag caacaggccg agccccgagc ggtagcacca gggccccaca atgtgccgct       240
     ccctccacca ttgtccttgg aaggggacat ggacgagaat tacgcgttct tcgaggacaa       300
     ctggaacaat tatgccacag cggtgggcat gggcgactgg ccggaagcgg acaacccgaa       360
     aaaagtgagc tttttgctgt cgatcgttgg ccccgatgcg ctgaaaaagt tcagcaactt       420
     cgatctgacg caagccgaca gggctacgcc gacaaccgta ttggccgcca tcaagaagaa       480
     ggttactcga accagaaacg tcatcgtgga ccgactggac ttcttctcgg cagcccagtc       540
     accggtggaa agtatcgacg agtacacatc ccgactgaag tcgctggcca agccggccaa       600
     actcggagcc gtggaagcag aactaatcac cttcaagctg gccacctcca acaagtggcc       660
     tcatctgagg tccaagatgc tcacgatggc ggatttgtcg gaagcgaagg cggtagatct       720
     gtgccgtgtg gaggaaatca cggccaagca cgttcaggtg ctatcagcgg acaagctgtc       780
     ggaggtgaat aagctcaaag catcgtcgtc gaaggcccgc cagtgcaagt tctgtggcga       840
     ttggcatgcg ttcaccaaag gatcgtgccc agcctacgga aagaagtgca agctttgttc       900
     cggcaagaat cacttcgaga aggtgtgccg gaagaatcgg gctcgaatga gttcgtcgaa       960
     gcgcaacagt gtgcgccgcg tcaagaagat caacgacgaa tcctcggagg acagcgagtc      1020
     ggacgacgag tggagcgatc agtccggaac agagacggag attgaaggcg aaatcggcaa      1080
     gatcttcgat aactcgaaga aagggggaaa cgttcttgcg gaagtgtccc tgaaagtgaa      1140
     aggcaagtgg aaaagtgtga agtgcaagct ggatacggga gcaaacacga gcttgattgg      1200
     ccacgactgg ttgtgcaagc tgacgggaga gtcggacccc gaattgcagc cgtctccgtt      1260
     caaactccaa gcgttcggcg gtggcatcat taacgttatg ggccaagtca agctgccgtg      1320
     caagtgccag aacaagaagt acattctcgt gcttcaagtc gtcgacgtca gtcacaggcc      1380
     gttgctgtcg ctgaaggtct gtaccacgtt cggcctgatc aagttctgca actccgttag      1440
     catggttcca gctaaagcga cgccggaagg agctcaagat ctgatgcgaa tctaccgcat      1500
     cgaagctgag aagatcgtcg acgagttcgg cgacgttttt cgtggctacg gaaaattcga      1560
     cggagaagtc accctggaga tcgacgagtc ggtgccgccg gtgattcagc agcctcgcca      1620
     agtcccgata gctctgcggc cgaagctgaa agccgaactg gaccagttgg agaaggatgg      1680
     aatcatcgcg cgagagtaca gccacaccga atgggtgagt aacattcttc tcgtgaaacg      1740
     gggtatcgcc ggagccgagt cgattcgcat ttgcctggac cccattcctc tgaacaaagc      1800
     gttgaagaga ccaaatctgc aatttgtgac gctggacgag attttgccgg agttgggtca      1860
     ggcaaaggtt ttctcgaccg tggatgcacg gaagggtttc tggcacgtgg tgctagacga      1920
     gcagagcagc aagttgactt cgttctggac tccatttgga cgctatcggt ggctgcgact      1980
     tccgtttggc atctccccgg cgccggaaat tttccagtcc caacctgcag gggatagtcc      2040
     aaggattgaa cggggtcgag tgcatagcag atgacgtctt ggtgtacggc cgtggtgcaa      2100
     cgatggagga agcgctacgt gaccacaacg caaatctgaa gaacctcctc tcgcgcttga      2160
     agctaaacca cgtcaaactc aacaattcga aactcaagct ctgtgagaca tccgtcaagt      2220
     tttacggaca cgttctcacc accgaagggc ttcaaccgga ccacaccaag atctcgacca      2280
     taaagcacta cccggtgcca accagcagga cggaactgca ccgtttcatt gggatggtca      2340
     catacctcag ccgattcatt cccaatttga gcgccgcctt cacaaggctg cggcggttga      2400
     tttcggagaa agaaccgtgg cgttggactc gagaggagga cgaagatttc tccaaggtga      2460
     agtcgctagt gtccgatatc acaacgctgc ggtactacaa cgttcgagag ccgttgacta      2520
     tcgagtgcga cgcgagctgc ttcggtctcg gagtggccgt cttccagaag gacggcatcg      2580
     tgggctacgc atcgagaacg ttgacggaca cggagaaaaa ctacgctcaa atcgagaaag      2640
     agttgcttgc gattcttttt gcatgtgtgc gctttgacca gctgattgta ggcaaccccc      2700
     aaactacggt gaaaaccgac cacaagcctt tgatcaacat tttcaacaag ccattgttga      2760
     cggctccaaa gcgactgcag cacatgctcc tgaacctgca acgttaccat ctggcgttgg      2820
     agtttgtcac cggaaaggag aacgttgtgg cagatgcgct ctctcgcgca cctcacaacg      2880
     actcgactgt gcgtgacgag taccagaagc tgaacatcta caagatcttc aagcaactcg      2940
     aagattgcaa cgtaagcggc tacctgagca tctccgacaa ctgcctggac acgatcatga      3000
     aggcgactga acaagacgca gccctactga cggtgatcga tttcattcgg aacggttggc      3060
     ccagcaccat cgatcgcgtt ccctcagccg ctaaaatcta cttcaagtac cgaagcgagc      3120
     tgtccacgca agacggattg gtgttcagga acgatcgtat tctgatcccg tgtgcactgc      3180
     agcggtccat gatcgacaaa gtgcacgtga gccacaacgg tatcgagtct acactgaagc      3240
     ttgcgcgaga gaacatcttc tggcccggaa tgagcgcgca gattacggat gtggtgaagg      3300
     agtgccatgt ctgcgctaaa ttcgctgcaa gtcagcagaa accgccgatg cagagtcacg      3360
     cagtcccgat ctatccgtgg caagtcgttt cgatggacgt gttcttcacc agctaccagg      3420
     gaaagcgaca ccagtttcta gtgacggtgg accactactc ggactacatc gaattggata      3480
     tcctcaagga catgtctgcc agaagcctag tcgagacctg caggaagaac tttgcgcgtt      3540
     acggatgccc ccagatcgtt gtcacggaca acgggacaaa ctttgtgaac gaggagatga      3600
     aggaaatggc gatcaagtgg aacttcaagc attcgacttc ggcccctcac caccagcagg      3660
     caaacggcaa agcggaagca gcggtgaaga ttgcgaagag gttgatccaa aaggcggagg      3720
     aaaccgacca ggacgtttgg tacgtcttgc tgcattggag gaacatcccg aacaagatcg      3780
     gcagcagtcc ggcgagcagg ctgttctcac gcagcacaag gtgtggagta cccgcttcgt      3840
     tcgagaaata cactcctcga atcgtgcaga acgttccgga agcaattctg gaaaacaaga      3900
     ggaaggtcaa atactactac gatcgaaaat ctcgcaacct acctgcactg gagactggct      3960
     cgccggtgta cgtccaggct caccccgaaa tcagcaaaac ttggacgcca gcgattgtga      4020
     ccgagaaact gaatgatcgc tcgtatgtgg tggacgtgaa tggagctagc tatcgccgag      4080
     acctgaccaa cctgcgaccg cgcaaagaac caacaacaat ccctctcgtt ccagcccaaa      4140
     gccatccacc aaccgaatca agtgctgcac aaactggcgc tgatttgaca gctgaacctg      4200
     aagcgtcgtc gcttgctgcg atgaggttcg acgaaactgc aacaacgaca acaacatcac      4260
     ccgttgtcaa ccaatcagct gctgccaccc cgtcggtgcg agagagagta agccagcttg      4320
     ctgcgatcaa cacacccggc aagcaaacca cagatgcgac gaacagacca acacgcgaga      4380
     gaaaaattcc aagcaagttt gcggactacg ttttggaaac ttaatttttt ataaagaaag      4440
     gagga                                                                  4445
//
ID   Gypsy-28_CQ-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   AAWU01011844;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_CQ_;
KW   Gypsy-28_CQ-I; Gypsy-28_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-151
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 436-436 (2011).
XX
DR   GenBank; AAWU01011844; Positions   13064   12914.
XX
SQ   Sequence 151 BP; 43 A; 44 C; 18 G; 46 T; 0 other;
     tgttacatta attattactc gggttaccac acacgctaaa ctgtattccc acctacactg        60
     aacactcttg attccctcct aaagtcattc tattaaagct cttgtatcga acagacgctc       120
     aagcctttta ctctggacca catccgtaac a                                      151
//
ID   Gypsy-28_DAn-I repbase;    DNA;    INV; 7121 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   13-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DAn_;
KW   Gypsy-28_DAn-LTR; Gypsy-28_DAn-I.
XX
NM   Gypsy-28_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7121
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-7121
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-JUN-2021).
XX
DR   [3] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1784..3118
FT                 /product="Gypsy-28_DAn-I_1p"
FT                 /translation="MQWNELYTELNKLKTDFDKSYKSLTQNRTIQQNTIHK
FT                 HAEILVARFNKARILIYDQRDRLDKNRWSQVSKFLTRLRSNLINVKERYDL
FT                 AISVPSILNTPSTVEPGDELELPTTDQVELEDLDSDRLEIEEKDLNNLTIP
FT                 AVLLQSELSDQDEEDIDSNNIIDQKPIIMADETIAQRAYIKDISNAIPEFN
FT                 GQKLNLQRFITALNLVNLTKGTFEHIAVEVIKSKIVGSTLYKVQNETTING
FT                 IIKKLKDNIIGETSDVIKAKMSKTLQKGKTAEKFTTEIENLRKLLEASYID
FT                 EGLPAEHADKFSTKEAINTMTKNCEHGRLKTVLEAGNFSTMNEAIAKYIQC
FT                 STDITGNPSTILYNRRGQPYHNNFRGNSRGRGYGRGYYNNNYHQNNGYNQN
FT                 NGYNPNYNNHTNNYRGRGNSRGYNRGGNNGYNNTGGNTNSQVRTIESQPEN
FT                 "
FT   CDS           3103..6762
FT                 /product="Gypsy-28_DAn-I_2p"
FT                 /translation="IPAGKLKTSLKKKPQNLQLYKINLSLNIYVTIKNYVT
FT                 KTSLTLLIDTGSDISILKINSDQYNEVDSTKTITMSGIGEGTIQSQGLTFV
FT                 EIQTGKFIIPFHFHLVNNDFPIPCDGILGMDFIKRFNCQLDFQIDQDWLIA
FT                 RPSDFNQDINIPITHSNNNNLLIPARSEVVRQINIITTHKEVLIKNQCIDE
FT                 GIIIASTITDSSNTFVRILNTTDKNKIINISKIKYEPLENYQIVQSNETKT
FT                 RKEDVLSKLTKNFPTMYKSTLTNLCTEFTDIFGLETEPISANNFYKQKLRL
FT                 KDFTPVYIKNYRTPHSQKDEINKQVEKLIKDDIVEPSVSEYNSPLLLVPKK
FT                 SLPGSEQKRWRLVIDYRQINKKLLADKFPLPRIEDILDQLGRAKFFSCLDL
FT                 MSGFHQITLEKESRDITSFSTSTGSFRFKRLPYGVKIAPNSFQRMMTLAFS
FT                 GLEPSQAFLYMDDLVVIGCSENHMIKNLTNVFNLCRKHNLKLHPEKCSFFM
FT                 HEVTFLGHKCTNKGILPDDKKFNVITNYPVPSDADESRRFVAFCNYYRRFI
FT                 PNFSYYSRHLTHLCKKNIKFNWTTECQEAFEYLKNALVQPTLLKYPDFNKE
FT                 FCITTDASKQACGAVLTQSYDGIDLPVAYASRTFTKGESNKSTTEQELTAI
FT                 HWAVNYFRPYIYGKYFTIKTDHKPLTYLFSMRNPTSKLTRMRLDLEEYQFT
FT                 AVYLKGKNNYVADALSRISIDELKEMNRQILKVTTRSQSKQKNNCAVSTSS
FT                 SDLQKQPTASKPKIFDVIHNEDVKKVVTLHLTISKCSLKKGKQIYARINVD
FT                 DLYTNGIFDLDQFFQRLEKIAGINKIRQLKMAPSEKIFELVSIDKFKEKGN
FT                 EILLNLRVALLQPVTIIENKKEKEAILFTLHDDPLQGGHTGITKTLAKVKR
FT                 HYYXKNMTRDVANHVKKCLKCQKSKTTIHTKTPLTITETPLKAFDIVLVDT
FT                 IGPLPKSDEGNEYAVTLICDLTKYLVTIPIQDKSAKTVAKAIFESFILKYG
FT                 PMKTFITDMGTEYKNSIINDLCKYLKINNITSTAHHHQTLGTIERSHRTFN
FT                 EYVRSYVLSDKTDWDVWLIYFTYCFNTTPSVVHGYCPYELVFGKTPTLNIK
FT                 FNSSEYITPLYDIENFAKESKFRLENAYKRARMMIEQNKQKQKETYDKRSN
FT                 DLKLEIGDKVLLKNEVGHKLDFKYTGPYRVESIGERDNITISNVKNKNQTV
FT                 HKDRLKKFYA"
XX
SQ   Sequence 7121 BP; 3016 A; 1275 C; 1044 G; 1779 T; 7 other;
     tggcgaccgt gaaggttcaa agaacctgag gaatgaagaa caacaacaac aacaagtagc        60
     aagcaaataa tcaacatcct aatgcagcca ccaacacctg cggataatag aaccagagga       120
     taataaacca acaacaacaa ctacaacagc agcgagcaaa atagaagtca agaaaacctg       180
     tcactacgca agacgacaca aaaaaaaaag atgatgttcc aaccaackga gaacaaaata       240
     actgagtgag ttgtgtgcaa ataatgggaa aacgcggagg tgtaaaaaat aaggtgaata       300
     aaagaatagc acacattaaa tggctattgt tttctaaaac accgcctccc gcgtggtcta       360
     ctgcacaaaa gttgcaggcc gagcttgact ttttaaaaac aagcckcgca gagagacgcc       420
     caattgttgc aacacactca catacaatac aaaatataac caagccaata acaaagcttc       480
     aaccaccgcc agcaaaaaag ataccggcgc tggtaaagac gtgcccagcc gactgtcccg       540
     gaccactcta ctctacggca tgtaacttca catgcccgaa gcccagtgcg aagatcagca       600
     ccgacaccgc mtaaacsgaa tagacmccaa aggacatcag ccgcagaccc ctggagtaac       660
     ctgtgcagcc accaccggcc cgacagcgct acaaggagcg cacaacaaaa aagatatatt       720
     tttttttaat gcactgcgtt gcattattaa tgtactgcgt tacattataa ttataaacga       780
     ctttatgtaa aattgagcgg aaccttttcc gcccaattag aagtgtagcc cgcaaagcta       840
     tgcgaaacaa taggcaggat aaatgtaata aaaacaaaaa taatataata taatacaaat       900
     aagataataa aagaaaattt tgtaaaagcg tacgaaacca ttttcgctcg tttataagta       960
     tagcccgtaa agctatgcaa aacaataggt aaaataaatg taataaaaac aaacaaaaaa      1020
     aaaaaaaaac atataagaaa taataaatga aaagtaattc tattagtaaa ttcagtgagg      1080
     aaatagttga tagttataca tataattata atcttaaaaa aaaaacaatg gctatagttg      1140
     atgttaagac agtggattcc actgctaacg taataaataa agttgagcca aataacatta      1200
     atttggaatt tgtaaacatt atgctgttaa taattgttgt cataatgtgc gccaattgtt      1260
     tttataaact atacaaactc cacaataaat gtttgaaaaa aaaatatatg agccaagcaa      1320
     acgacttgga caaaatctaa aaaaaaaaaa gagagcaaac aaagcacaca aaataaaaaa      1380
     aaaaataaat aaataaaaat attaatgatc aaaatttttt ttttwaaatt atatacaata      1440
     aagtaacgac attactataa taaagaaaat tttttttttc taaataaaga tgaccaccat      1500
     agaagccatt agaaaagttt acgaaaggga tgcttatttt aaagaacatg ttcaacaaat      1560
     agtcccaacg actccaataa gcataaatca attagaatac cttctaattg aaacatttaa      1620
     tttcgaaaat tcaccattaa tacattgctc aaaaacacaa aaagcgattg tattaagcac      1680
     cattccaggt gtccaaataa aatcagtact ggaagaacat gaaacattag gcaaaactct      1740
     tgttatggta atattcagaa aataattctc cgtattaaca aaaatgcaat ggaatgaatt      1800
     atacaccgaa ttgaataaat taaaaaccga ttttgacaaa tcatataaat ctttaactca      1860
     aaatcgtaca attcaacaga ataccataca caaacacgcc gaaatattag tagcccgttt      1920
     taataaagcg cggatattaa tatatgacca gagagatcga ttagataaaa atcgatggtc      1980
     acaagtttca aagttcctaa caagattgcg atctaaccta ataaatgtaa aagaaagata      2040
     tgacttggct atttcagtac caagcatctt aaacacaccc tcaacagtag aacctgggga      2100
     cgaattagaa ctaccaacca cagaccaagt agagttggaa gatttagact ctgatagatt      2160
     agaaatagaa gaaaaagacc taaacaatct aactataccc gcagttctct tgcaatctga      2220
     attatcagac caagacgaag aagatataga ttccaacaac ataatagacc aaaaaccaat      2280
     tataatggca gacgaaacaa ttgcccaacg ggcatacata aaagatattt caaatgccat      2340
     cccagagttc aatggccaaa aactaaatct tcaaagattt atcacagcct tgaatttagt      2400
     gaatttaaca aaaggcacat ttgaacatat agcggttgaa gtaatcaaat caaaaattgt      2460
     aggatcaacc ctatataaag tccaaaatga aaccactata aatggaataa ttaaaaaact      2520
     caaagacaat ataatcggag aaacatcaga tgtcattaaa gcaaaaatgt caaaaactct      2580
     tcaaaaaggt aaaacagctg aaaagttcac aactgaaatc gaaaacttgc gaaagcttct      2640
     tgaagcatcg tatatcgatg aggggttgcc tgccgaacat gctgataaat tcagcacaaa      2700
     agaggcaatc aacacaatga ctaaaaattg tgaacatgga cgccttaaaa cagtactaga      2760
     agcaggcaat ttttcaacaa tgaacgaagc catcgctaaa tatatacaat gtagtaccga      2820
     tataacaggc aatccaagta caatcctata taaccgaaga ggtcaaccct accacaataa      2880
     cttcagagga aattcccgcg gaagaggtta cggtagaggc tattataaca ataattacca      2940
     ccaaaacaac ggttataacc aaaataatgg gtataaccca aactataata accacaccaa      3000
     taattataga ggtcgtggaa attctagagg ttacaaccgt ggtggaaata acggctacaa      3060
     taacactggt ggaaatacca attcccaagt tcgaactatt gaatcccagc cggaaaacta      3120
     aagacttccc ttaagaaaaa gccacaaaac ttacaattgt ataaaataaa cctcagcctc      3180
     aatatttatg taaccattaa aaattacgtt acaaaaacat ccctaacact gttaatagat      3240
     acaggctcag acattagcat tttaaaaata aattcagatc aatataatga agtagattca      3300
     acaaaaacta taacaatgtc tggtatagga gaaggtacta ttcaatctca aggtttaact      3360
     ttcgtagaaa ttcaaacagg aaaattcata attccatttc attttcattt agtaaacaat      3420
     gacttcccaa taccatgtga tggcatattg ggaatggatt tcataaaaag gttcaattgt      3480
     caactagatt ttcaaataga tcaagattgg ttaatagcaa gaccatcaga tttcaatcaa      3540
     gacataaata ttccgattac acattcaaat aataataact tacttatccc agcacgatcc      3600
     gaagtcgtga gacaaattaa tataataacc acccacaaag aagtccttat taaaaatcag      3660
     tgtatagatg aaggcatcat tatagccagc actataactg attcaagcaa cacatttgtc      3720
     cgaatattaa atacgaccga taaaaataaa attataaaca tttccaaaat aaagtacgaa      3780
     ccattggaaa attatcaaat tgtccaaagc aacgaaacta aaaccagaaa agaagatgtc      3840
     ctttcaaaat taacgaaaaa ttttcctaca atgtataaaa gtaccctcac caacctatgt      3900
     accgaattta cagatatatt cggattagaa accgaaccaa tttcagcaaa taatttctat      3960
     aaacagaagc tgagattaaa agattttaca ccagtctaca ttaaaaacta tcgaacacca      4020
     catagccaaa aagatgaaat aaacaaacaa gtagaaaagc taataaaaga tgatatagta      4080
     gaaccatcag tatcagaata taacagccca ttgctgttag tacccaaaaa gtcacttcct      4140
     ggctcagaac aaaaacgttg gagactagtt attgactatc gtcaaataaa caaaaagcta      4200
     ctagctgata aattcccact accaagaatc gaagatatct tagatcaact tggtagagca      4260
     aaattttttt cctgtctaga tttaatgtct ggatttcacc aaattaccct agaaaaggaa      4320
     tcaagagaca ttacctcttt ctctacaagc actgggtcat tcagatttaa aagactacct      4380
     tatggagtaa aaatagcacc aaattcattc caaagaatga tgacattagc attttcagga      4440
     ttagaacctt cccaagcttt cctttatatg gacgacttag tagttatagg ttgttcagaa      4500
     aatcatatga taaaaaatct aactaatgta ttcaatctat gtagaaaaca caaccttaaa      4560
     ttacaccctg aaaaatgctc tttctttatg cacgaagtca catttttggg acacaaatgc      4620
     acaaacaaag gaattttacc cgatgataaa aaatttaacg taataacaaa ttatcccgtt      4680
     ccgtccgatg cagatgaatc tagaagattc gtagcctttt gcaattacta cagacgtttc      4740
     ataccaaatt tctcgtatta ttcaagacac cttacccatt tgtgcaagaa aaacataaaa      4800
     ttcaactgga ctactgagtg tcaagaagct tttgaatatc ttaaaaacgc actagtccag      4860
     cccacactat taaaataccc agattttaat aaagaatttt gtataaccac agatgctagt      4920
     aaacaggcat gcggtgcagt tctaacccaa tcatatgatg ggatagacct tccggtagca      4980
     tacgcctcaa gaacatttac aaaaggcgaa agtaataagt ccacaactga acaggaattg      5040
     acagctatac attgggcagt taactatttt agaccatata tatatggaaa atatttcact      5100
     ataaaaacag accacaaacc attaacatat ctattttcaa tgagaaaccc aacttccaag      5160
     ttaacaagaa tgaggttaga cttggaagaa tatcaattta ccgcagtata ccttaaggga      5220
     aaaaacaatt atgtggcaga tgccttatca agaataagca tcgatgaact aaaagaaatg      5280
     aatagacaaa tactaaaagt cactactaga tcccaaagta aacagaaaaa taactgcgca      5340
     gtttcaacat ctagttcgga tttgcaaaag caaccgacag cttccaagcc caaaatattt      5400
     gacgtcattc ataacgaaga tgttaaaaaa gtagtgacct tgcatctaac aatatcgaag      5460
     tgctctctca agaagggaaa acagatatat gcaagaataa acgttgatga tctatatacc      5520
     aatggaatat tcgatttaga tcaatttttc caaaggcttg aaaaaatagc cggtataaat      5580
     aagattagac aacttaaaat ggcaccgagt gaaaaaatct ttgaactcgt ttcaatagat      5640
     aaatttaaag aaaagggcaa tgaaatatta ttaaatttaa gagtagcgct actccagccg      5700
     gtgaccataa tagaaaataa aaaagaaaag gaagctattc tgtttacatt acatgacgat      5760
     cctttacaag gcggacacac aggcataaca aaaacgctag caaaagtaaa aagacattac      5820
     tattsgaaaa acatgacacg tgacgttgca aaccacgtaa agaaatgtct gaaatgccaa      5880
     aaatcaaaaa ccacaatcca tacaaaaacg cctttgacga taacagaaac cccattaaaa      5940
     gcgtttgata tagtattagt ggacacgatc ggtccattac ctaaatcaga cgaaggtaac      6000
     gaatatgcag tcactctaat atgcgatttg acaaaatatc tcgttacaat ccctatacaa      6060
     gacaaaagtg caaaaacagt agcgaaagcc atattcgaat cttttattct aaagtacggt      6120
     ccaatgaaga cgttcattac ggacatggga actgaatata agaattcaat tattaatgat      6180
     ttatgcaaat atctcaaaat taataatata acatcaactg cacatcatca ccaaacattg      6240
     gggacaatag aaagaagcca tagaacattt aacgaatacg ttagatcata cgttttgtca      6300
     gataaaacag actgggatgt ttggcttata tactttacat attgtttcaa tacaacaccc      6360
     tctgttgtac atggatactg tccatatgaa ctagtgtttg gtaaaacccc gaccttaaac      6420
     attaaattca atagcagtga atacattaca ccactgtatg acatagaaaa ctttgcaaaa      6480
     gaatcaaaat tcagactcga aaacgcctat aaaagagcga gaatgatgat tgaacaaaat      6540
     aagcaaaaac aaaaagaaac ctatgataaa agatcaaatg atttaaaatt agaaatagga      6600
     gataaagttt tattaaaaaa cgaagtaggg cataaattag actttaagta tacaggaccc      6660
     tatagggtag aaagtatagg agaacgagat aacataacaa tctcaaacgt aaagaataaa      6720
     aatcaaacag ttcataaaga tagattaaag aaattctatg cataattcta tggtggccac      6780
     caatcaatca atcaaaaaaa aaaaaaaaaa taaaaaaaaa aaaatttata tatataatat      6840
     acaataataa gcaaaataaa taagataact attttttcag agaaatttta catatgacaa      6900
     taatgcaaac aaaattaaaa catatttttt tttccttttg tttacatttt tctaaaattc      6960
     tagattttga tcataaaata taaattaatc atatattact aaaatttaat caaaacatta      7020
     agaaaatctt taaactctac actaaatata tataatcaat agataataag ttaattcaaa      7080
     ataactccat tttattacgt tattttaaaa aaggagggag a                          7121
//
ID   Gypsy-28_DAn-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   13-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DAn_;
KW   Gypsy-28_DAn-LTR; Gypsy-28_DAn-I.
XX
NM   Gypsy-28_DAn-LTR.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-435
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-435
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-JUN-2021).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
SQ   Sequence 435 BP; 156 A; 93 C; 75 G; 111 T; 0 other;
     tgtagtatgc atgggtcatt ataggaagca tccactgtag caatacaata ttgtgctaca        60
     gtgttgttat ataatcataa tgccccggcc aaatagccag ctatatacat atgccttaaa       120
     gcctcactcc tgggaagtgc attggtcagc aaattcccat gagttgacaa cgcatacaaa       180
     tgagccatgc atacttacac ccttacgctc gggccgctac cagccttata tacgagcata       240
     gaaatatata tatatatgaa tatagccgcg actgatcgct gccgagcttt tgtaggcagc       300
     gcagccgcga gcaacagaat atcaaatcac tctggatttg acttttaaag aataaagtct       360
     acattaacaa aacactaaga aaacacaata aagattataa attaaataaa actacatggt       420
     ttaaatcaaa caaca                                                        435
//
ID   Gypsy-28_DBp-I repbase;    DNA;    INV; 6823 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   03-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DBp-I.
XX
NM   Gypsy-28_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6823
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 697-697 (2012).
XX
RN   [2]
RP   1-6823
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-FEB-2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1714..2973
FT                 /product="Gypsy-28_DBp-I_1p"
FT                 /translation="IATEWNNLNAKLVDIKTQFDKSYKCLTQNRSVSSVTV
FT                 NKHATTLVACFNQARSLIHDNRKKLNSHHWSYVSRFLQRLKNNLQNIKTKY
FT                 LLEITIPSILNTPAVIEEETNTDTEAVSDSEIASDSEYQIKEEDLQDLTIP
FT                 AVIHFPEVSESESESISEKVVNMAMSQVEYLKIASSLLPEFDGKAENLTSF
FT                 IDALNLIDSLKGPHETTAINLIKSKLKGHTRKLITTESTIVDIIGKLKSKI
FT                 KGDSVSGITAKLMNLQQKQKTANQYVQEVEKLAKALEGAYIDDGLSSETAT
FT                 KYSTEHAVSAIIKNCSIEKVKYIMEAGTFSTLDQATTKFVNSCTDATGQSN
FT                 TVLYFSGQRPYNRGSRGNYRGRINTQNNSNRRYNNNNRGRGQYRGNYRGSG
FT                 NQSRGQIITPLMYVSLRVVRKTTRHL"
FT   CDS           3026..6604
FT                 /product="Gypsy-28_DBp-I_2p"
FT                 /note="retropepsin, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MFVVFKNSATNNNLTFLLDTGADISLLKDNSDAFENI
FT                 EHDRTIDIQGIGQGVIKSNGLVRIELQTDKYTIPHNFHLVSKNFAIPCDGI
FT                 IGVDFIKTFNCKLDCEPANDWFIIRPNNLKYPINVPIKFGSGNNLTLLPAR
FT                 SEVVRKLDINLPEDNILIPNQEVVSGIYVANTVATSNDTFVRLLNTTSTDQ
FT                 LIDINNIQYEPLSNYEIIQPSKGSRTDEVISKLKKNFPKQFESELTDICSK
FT                 YSDIFGLETESITTNNFYKQHLRLKDKEPVYIKNYRIPHSHQDEIKNQVDK
FT                 LIKDNIVEESVSEYNSPLLLVPKKSLPGSNDKKWRLVIDYRQINKKLLSDK
FT                 FPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEEKSRNITSFSTNNGSYR
FT                 FTRLPFGLKIAPNSFQRMMTIAFSGLEPSQAFLYMDDLIVIGCSEKHMIKN
FT                 LTNVFELCRKNNLKLHPQKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIMN
FT                 YPVPHDGDSARRFVAFCNYYRRFIKNFADYSRHLTRLSKKNVPFLWTDECQ
FT                 KAFLYLKKKLMEPTLLQYPDFSKEFCIITDASKQACGAVLTQNYNGLQLPI
FT                 AYASRAFTKGESNKSTTEQELAAIHWAILHFRPYIYGKHFTIKTDHRPLTY
FT                 LFSMVNPSSKLTRMRLELEEYDFTVEYLKGKDNFVADALSRITISELKDIH
FT                 NKILKVTTRYQSRRNICADNEKVELPRQSTEKASQPNVYQVINNDEVRKVV
FT                 TLHIKDALCLFKHGKRIIARIDIGDLCANGNIDLGQLFPRLEKEAGTLKIS
FT                 QLKMAPREHVFEKISIDDFKNMGNELLNTLRVALLNPVTTLTNVKEKEAIL
FT                 STFHDDPIQGGHTGITKTLAKVKRNYYWKGMTRDITQHIQKCEKCQKAKIN
FT                 KHVKTPLTITETPLKAFDRVIVDTIGPLPKSENANEYAVTLICDLTKYLVA
FT                 IPIPNKNANTIAKAIFENFILKYGPMKTFITDMGTEYKNSIINDLCKYLKI
FT                 TNITSTAHHHQTVGTVERSHRTFNEYIRSYISVDKTDWDVWIQYFVYCFNT
FT                 TPSMAHDYCPYELVFGKTSNLPKHFNSVNNIEPIYNIDDYAKESKYRLEVA
FT                 YKRARNMLDSNKQKNKEYYDKKAKEISLSIGDKVLLKNEVGHKLDFQYTGP
FT                 YRVEQINDRDNIVISGNKNKKQTVHKDRIKIFIS"
XX
SQ   Sequence 6823 BP; 2761 A; 1225 C; 1127 G; 1707 T; 3 other;
     tggcgaccgt gacacawgtc ctggaggact taggacttgc aacagcagca gtcagcaact        60
     gaagaagaac aagaccgaga ataagaagaa gcagaagaag cagcgttgca gagatgcctt       120
     ccaacgatac agtcaacaac tgaacaaaac ggaaataatt ctgagtgagt acaggcaatg       180
     agcaaaaggc gaagtggggt caaagaacga ctcagaaaac gcaagtctga gatcgtaaag       240
     accatctaca aaagcaaaaa tcccccgaag tgggatattg ctcaaaaact tttcaacgaa       300
     ctcgaacaca tcgagacgtt gttaaagaaa aaagccactg actcaacctg taactcacaa       360
     acaattcaga ataaaataat taatccaaaa actcatcgtc cagatcggaa aaggatacag       420
     ccttacaaag ccagatgtcc agctgactgt gaaggcccat tatacagccc gtactgcatg       480
     gagacatgca taccagatac caggaacagc aacaaaagcc agtgaaccca gcaccggcac       540
     cgccagcaaa tcaagctgcg cctaaagaag tcgacagcac cacaaagggt gcagatgccg       600
     gcggcactac atagagtgca ggacaacccg cagcgcaact aagtgcgccc accgcctaga       660
     cactacatcc taggcactac atagagtgca ggacaacccg acagcgcaac taagtgcgcc       720
     caacgcctag atagctaaac taataataat actaatatat atatataaaa gtcattgtaa       780
     tacccgacga caattgagtc gaccggtaag ccgtttggcc cgaaaagcca ttcgaaacaa       840
     taggcaggaa aatatgtata aaaactaaat gtctatagag acaaacaaga taagcaaaca       900
     aaaaacaaaa taagcaaaga tatagaatca gaattatcag aaaattttgc caacatgggc       960
     attgtagacg ttaaaactgt agactctaca gccaatgtta tcaacaaagt agaagttgat      1020
     aacactgacc ttaaatttat aaccatatta attgttataa tattcataat aaatgtggca      1080
     aatctattgt ataaagtata taaataccac aataaatgta tcaagaaaag ataccagagc      1140
     caagcaaatg acttggataa aatttaagaa aaacaattaa aacaaaaagc gaaaaaaaga      1200
     acattgtaat ctacataagt aagctaataa aatgacaatt ttatgaataa tctaattcca      1260
     ctcgctaatt tgtttaatgt atctatgtgg tatcattgaa atacaacttg attgaataat      1320
     tgaattttga atttaaagca atgcccgaaa tacaaatagg ttcatattta aacgatgttt      1380
     tagtacacga cccagatttc cgaattcgtg catttagcat tctgcacaaa cacaaggatt      1440
     atatgtcctt atatgaattt gaatgtgaat atatggaaac atataaccgt atgttcagcc      1500
     ctcttctgta cttcgataat acaattaaag caataatttt gaatacattt ccgtatgtat      1560
     atatcaaaaa agtacaagaa actaatccaa tactgggcga atgtacaatt ttaatggtaa      1620
     aactgcatag atagatgaaa gagagacatt taaaaaatat atatatataa ctaaagacac      1680
     ggcgaagaac tatttcatta ttttccatta tgaattgcaa cggaatggaa taatttgaac      1740
     gccaaattag ttgatattaa aacacagttc gataagtcgt ataaatgctt aacgcaaaat      1800
     agaagtgtat ctagcgtaac agtgaataaa cacgcaacaa cgctagttgc ttgtttcaac      1860
     caagcacgtt cattgataca cgacaataga aaaaagttaa actctcacca ttggtcgtat      1920
     gtatctagat ttttacagag gttgaaaaat aaccttcaga atataaagac aaaatactta      1980
     ctagaaatta caataccttc gatactgaac acaccagcag taatcgaaga agaaacaaat      2040
     acagatacag aagctgtaag cgattcagaa atcgcaagcg attcagaata tcagattaaa      2100
     gaagaagatc tacaggatct cacgatacca gcggtaatac attttcccga ggtatccgaa      2160
     tctgagtcag aatcaatatc tgaaaaagtc gtaaacatgg ctatgtcaca ggtagaatac      2220
     ctaaagattg cctcatctct gctgccagag tttgatggaa aggcagaaaa tctgacaagt      2280
     ttcatagacg cattgaatct aattgattca ctaaaaggcc cacatgaaac aacagccatt      2340
     aacttaatca agtcaaaatt gaaaggccat acaagaaagc tcattaccac agaatcaact      2400
     attgttgaca taattggtaa attgaaaagt aaaataaaag gtgattcagt atcagggata      2460
     actgcaaaac taatgaacct tcagcaaaag caaaaaacgg ccaatcaata tgtacaagag      2520
     gtagagaagt tggcaaaggc cctagaagga gcctacatcg acgatggact atcctccgaa      2580
     acagccacta aatacagcac agagcatgct gtcagtgcaa ttattaaaaa ttgctctata      2640
     gaaaaagtta aatacataat ggaggctgga acattcagca ctctagacca agcaacgact      2700
     aagtttgtca atagttgcac agatgcaaca ggacaatcta atactgttct atacttcagt      2760
     ggtcaacgac cctataatag aggtagtcga ggaaactacc gaggtagaat aaatacccaa      2820
     aacaacagta atcgtcgtta taataataac aatagaggca gaggccagta tagaggaaat      2880
     tatagaggta gcggtaatca aagccgcggc caaataataa ctcctctaat gtacgtgtca      2940
     ctcagggtag ttcggaaaac taccaggcac ctttaggtac acaaaattaa ataaaaaagt      3000
     acacacagta aacttaagtc ttaatatgtt tgtagtattc aaaaactccg ccacaaataa      3060
     taatctcaca tttctcctag atacaggagc agacatttca ttactaaaag ataattcaga      3120
     tgcttttgaa aacatcgagc atgatagaac aatagatata caaggcattg gacaaggagt      3180
     aattaagtcc aatggtttag ttcgaattga attgcagact gacaagtata caattccgca      3240
     caatttccat ttagtttcaa aaaatttcgc aataccatgc gacggaatta taggagttga      3300
     ctttataaaa acgtttaatt gcaaattaga ttgtgaacca gcaaatgatt ggttcataat      3360
     aagaccaaat aacttaaaat acccaataaa cgttccaata aagttcggtt ctggtaataa      3420
     tttaacacta ttaccagcaa gatctgaagt tgtccgtaaa ttagatataa acttaccaga      3480
     agataatatc ttaattccaa atcaagaagt agtatccggt atttatgttg cgaatacagt      3540
     agcaacatcc aatgatacat ttgtccgttt actgaataca accagtaccg accaattaat      3600
     agatataaat aacatacagt atgaaccgct ttcgaattac gagataattc aaccaagcaa      3660
     aggttctaga acagatgaag tcatatccaa attaaagaaa aactttccta agcaattcga      3720
     atcagagctc accgacatat gttctaaata tagtgatata ttcggactcg aaaccgaatc      3780
     aatcacaact aataattttt acaaacaaca tttaagactt aaagataaag aaccagtgta      3840
     cataaaaaac tacagaatac cgcacagtca tcaagacgaa ataaagaacc aagtagataa      3900
     acttattaaa gacaatatag ttgaagagtc tgtatctgaa tacaatagcc cacttctgtt      3960
     agtacctaag aaatcactcc caggttctaa tgataaaaaa tggagattag taatagacta      4020
     tcgccaaatt aataaaaaac ttctgtccga taaatttccc ctacctagga ttgacgacat      4080
     acttgatcaa ttaggtagag ctaaatactt ttcatgcctt gaccttatgt caggttttca      4140
     tcaaatagag cttgaagaaa aatcaagaaa tataacgtca ttctcaacca acaacggctc      4200
     atatcgtttc acgcgattgc catttggttt aaaaatagca ccaaattcat ttcagagaat      4260
     gatgacaata gcattctcgg gtctagaacc atcccaagca ttcctttata tggacgatct      4320
     aatcgtcatt ggatgttcag aaaaacatat gatcaaaaac ctaaccaatg tatttgaact      4380
     ctgtagaaaa aataacctca aattacatcc acaaaaatgt tcattcttta tgcatgaagt      4440
     gacatttctt ggtcacaagt gcacagataa aggaatactt ccagatgaca aaaagtatga      4500
     tgtcatcatg aattatcccg taccacacga cggggacagt gctagacgat tcgttgcatt      4560
     ctgcaactat tatcgacgtt ttataaaaaa cttcgccgac tattcacggc acttaacacg      4620
     attaagtaaa aagaatgtcc cattcttatg gacagacgaa tgccaaaaag cattcctgta      4680
     tttaaaaaag aaacttatgg aaccaaccct gttgcaatat cccgatttta gcaaagaatt      4740
     ttgcataatc actgatgcaa gtaagcaagc atgtggagca gttttaaccc aaaactataa      4800
     cggactccaa cttcccattg cttacgcatc gagagcattc acaaaaggtg aaagcaataa      4860
     gagtactaca gaacaagaat tagcagcaat ccactgggca atattacatt ttcgaccata      4920
     tatttatgga aaacatttta caattaaaac agatcacaga cctttaacat atttattttc      4980
     tatggtaaat cctagttcta aattaacacg catgcggcta gaattagaag aatacgactt      5040
     tactgtcgag tacctaaagg gtaaagataa tttcgtggca gacgccctat ctaggataac      5100
     aatatccgaa ttaaaagaca tacacaataa aatcctgaaa gtcactacca ggtaccaaag      5160
     tagacgaaat atctgcgcag ataatgaaaa agtagaattg ccaaggcaat ctacagaaaa      5220
     agcttctcag cccaacgtat accaagtcat aaataatgac gaagtacgta aagtagtgac      5280
     cttgcatata aaagatgcgc tatgtttatt taaacatggt aaaagaatta tagcaagaat      5340
     agatattggt gatttatgtg caaatggaaa tattgactta ggacaactat ttccaaggct      5400
     tgaaaaagaa gccggtacat taaaaataag ccaattgaaa atggcaccgc gggaacacgt      5460
     ctttgaaaaa atttcaatag atgatttcaa aaatatgggc aatgaattat tgaatacatt      5520
     aagagtggcg ctactcaacc cggtgaccac tttaacaaat gttaaagaga aagaagcaat      5580
     attgtctaca ttccatgatg atcctataca aggaggtcat acaggcatta caaaaacctt      5640
     ggccaaggta aaaagaaatt attactggaa aggtatgact cgtgatataa cacagcatat      5700
     ccagaaatgt gaaaaatgcc aaaaagcaaa aataaataaa catgttaaaa cccccttaac      5760
     tattactgaa acccctttaa aagcctttga cagggttata gtagacacta taggtccact      5820
     acccaagtca gaaaacgcaa acgaatatgc agtcacatta atttgtgacc tgactaaata      5880
     tttagtagca attccaattc caaataaaaa cgctaataca atagcgaagg ctatattcga      5940
     aaattttatt ctgaaatacg gtccaatgaa gacgttcatt acggacatgg gaacagaata      6000
     caaaaattcg ataataaatg acctgtgcaa gtatttaaaa ataactaata taacatctac      6060
     tgcacaccac catcagacag ttggaacagt cgaaagaagt catagaactt ttaatgaata      6120
     catacgttca tatatatcgg ttgataaaac tgattgggat gtatggatcc aatatttcgt      6180
     atactgtttc aacacgaccc catctatggc acatgactat tgtccatatg aacttgtctt      6240
     tggaaaaaca agtaacttac ctaagcattt taatagcgta aataatatag aaccaatata      6300
     taacatagat gattacgcta aggaaagtaa atatagatta gaagtagcat acaaaagagc      6360
     aagaaatatg cttgactcga ataagcagaa aaataaggaa tattatgata aaaaagctaa      6420
     agaaataagt ctatcaatag gagataaagt tttacttaaa aatgaagtag gacataaatt      6480
     agacttccaa tacacagggc cctatagagt agaacaaatt aatgacagag ataatatagt      6540
     tatttcagga aataaaaaca aaaaacaaac agtacataag gataggataa aaatttttat      6600
     ttcataagaa tcaacggtca tacatttcaa aaatactata tagatatata tatgaaaaag      6660
     aaaacactga aaamaaaatt ttttctcaaa tataataata ataaaattgt caatttttag      6720
     catgaaaaaa aaataaaatw aaattttaca aataaaaaaa aaaaataaat aaaattttaa      6780
     aaataacttc actaggttac gttatttttc aaaaggaggg aga                        6823
//
ID   Gypsy-28_DEl-I repbase;    DNA;    INV; 5772 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DEl-I.
XX
NM   Gypsy-28_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5772
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 467-467 (2012).
XX
RN   [2]
RP   1-5772
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (21-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1032..2486
FT                 /product="Gypsy-28_DEl-I_1p"
FT                 /translation="NNNSHGYLTRSNLKVRGLSVLNLERIIMSDDEKGAGS
FT                 APKCVLCEKTLASAPTLQIKCGHKFHKVCFESYAKTRNACPICKETPHDTR
FT                 QRKRQNTPAGAGSSSLEEAEQVAISQQAIGNIVAQQVKAMQNDLLAQLSEK
FT                 MAQLIQVNLAAHMPPQSNVPPAINARRLSESVNFQVGGPTSIVHGSGLATP
FT                 RTEVNELAHRPDKVCQIVNSWKLRFSGSKEGLSVDNFIYRVQALTEQTLDS
FT                 NYEALCGNASILFEGKARDFYWRFHKSVRVVNWDGLCCALRKQFRDTRSDV
FT                 DIREAIRDRKQKDKEDFDTFHDAVVQLMDNLEYPMPERDIVDTLSRNLRPE
FT                 IRHELLNIRISSVDSLREICRRRERFLEDVKRNYSYQKTIPFRKNVAELVE
FT                 EAQSDDATEFSDVEVDGEIGAMALICWNCRQEGHRYHDCEGKRKIFCFGCG
FT                 RPNTYKPSCVKCQKNAKMNTQPRQPLCVQRQKPTNPETNQ"
FT   CDS           2399..5695
FT                 /product="Gypsy-28_DEl-I_2p"
FT                 /translation="MSKKRQDEHTASSAVVCSAPEADESRDEPVETPSSTD
FT                 LLNLSEKNHSPLTFWPQLVKSNQRLPSPNPVCPKKRSRNASRIRAFWSAAK
FT                 TINAIRYKKYDKRPYAEVRVLDRVVLGLLDTGAAMSALGGKLAEQVVLSRI
FT                 PFKRVATVASTADGKRQEIIGRLKIPVQYKKITKDLELHIIPSLSQDLYLG
FT                 IDFWQAFDLLPASMNIAEIAQESHDLTTSQQEILKSVVALFPSFAISGLGK
FT                 TSLISHTIDIGDAKPVKQRHFPVSPAVEKLLYEEVDRMLSLGVIEESDSAW
FT                 SSPVVLVQKPGKIRLCLDSRKVNAVTKKDAYPLPQIDGILGRLPKAMFISS
FT                 LDLKDAYWQIPLDKASRDKTAFTIPGKPLYQYKVMPFGLTNASQTMTRLMD
FT                 KVIPASLRNEVFVYLDDLLIISESFEAHMRVLSLVAGFVKTAGLTLNVEKS
FT                 KFCMRSVKYLGHIVGEGVIRTDPEKISAMKDFPLPQSLKALRRFLGMAGWY
FT                 RKFIKNFSSVTAALTDLLKPRKKFVMSKEGERAFEQLKEMLCSAPVLHSPD
FT                 FSRPFFIHCDASKTGVGGVLVQKSDEGDEYPIAFVSKKLNSAQKSYTVSEQ
FT                 ECLAAIICIKRFRAYVEGHAFTVITDHASLKWLMSQTDLHSRLARWALKLQ
FT                 SFDFKIEHRSGKLNVVPDALSRVNESELAVLDASQGLLVELDSPEFKSVEY
FT                 LELLEKVKANAEKLPDLTVSDNLVYRRTEHATGEPLHDVFNWKLWIPPKLV
FT                 PEVLKKAHDDPLASHGGIHKTLERVRRYYFWPGLVNDVKRYIQACDTCKMT
FT                 KAPNCIQRPLMGTSPESQRFFQRLFVDFLGPYPRSRSGHIGIFIVLDHYTK
FT                 FVFLKAVKKLTADVVIKYMQQDLFHTFGVPETIVSDNGSQFKSEAFQKFLR
FT                 ENKVGHTLTAVYSPQANASERVNRSVIAAIRSYVRPDQKDWDEQLSSICCA
FT                 LRSAVHSSIGTSPYYMVFGQHYISSGSTFKLLRNLQMLEDRSAMFTREDSL
FT                 DIIRSKACDVMKRLNEKNSRQYNLRSRDISYAEGQEVYRRNFKQSNFVAGY
FT                 NAKLAPTYLKARVKKRVGQSYYDLEDLQGXYVGRYHAKDMKQ"
XX
SQ   Sequence 5772 BP; 1701 A; 1101 C; 1386 G; 1582 T; 2 other;
     attataaata attcagttaa taatgattat taattctttg gcgcccatcg tttcggccac        60
     atttaaaatg tgctcacaaa ctcatacatc atttcttttc tccacctagg gtgtcagcaa       120
     ttcggcagtg tgctaaacca gagtggttgg tagtaacaca gctgctggcg ttcactttca       180
     aaacaaaaat tctctcagtt tcgctgcact tccgatctgg cgatttggaa gaacgactaa       240
     ccgaattatc agtagtaggt cagtcggcca cgtcaaacgg aagcagcaga ggagcattag       300
     ctttcctata cactattttc cagggtagcc cccaaagtac ggcatatcag tacgcttagg       360
     agaagcaggc taacaatcat tttagtaatg atttgtctga ccacgtatga tttgttgtag       420
     taaagggtta agtctttatg aactaaatca taatctttta tcaagcatct gcataggatt       480
     tattgcaaca accttttaca agggaattgc aagccacaga tgatggcaag agtgtaatac       540
     tttactctta gcaaagaaga gcgcggtagc agtcgcttgg acatcagtcg tcgcttatct       600
     cttaagagcg gtaactgacc acggctgacc acccgcgcag cagcgctgtt tgttgttgtt       660
     tagcgcgatt tttttttgct gtctttgttt tctttggttt cttttacatt gtcaaatttg       720
     gatcagttca aggccagtac ttattcgcag gggaataagc tatgcttgtt ggcaaaatat       780
     tttatgatat attttttttg tttattaatt caagtttctt gttacgtttt taggttttac       840
     aattatttca gctaattaac tggtgggatt tcagaaccaa ttattttagc aaaacatttg       900
     gtcttctcat tgtttttccg ccgttcgcct actgtagtcg gctgctgata aaagggaagc       960
     gcgacgagcg aacatctgat cgagctgagg aggtcattga tctctaagtt tgaaggtgcg      1020
     gaaagcagta gaacaataac agtcacgggt atttaactag gagtaattta aaagttaggg      1080
     gactcagtgt tttaaattta gaaagaataa taatgtcgga cgatgagaaa ggcgctgggt      1140
     ctgcacccaa atgcgtttta tgcgaaaaga ccttggcttc ggcaccgacg ctgcaaatta      1200
     aatgtggtca taaattccac aaagtctgtt tcgagtcgta tgccaagacc agaaatgctt      1260
     gtccgatctg caaagagact cctcacgata ccagacagcg taaacggcaa aatacgcctg      1320
     caggtgcagg gtcatcaagc ttagaagaag cggagcaggt agctatatcc cagcaagcta      1380
     tagggaacat tgtggcacaa caagtcaaag ctatgcaaaa tgatctgcta gcacagctat      1440
     cggaaaagat ggcacagctg attcaagtta acttagcggc tcatatgccg ccacaatcta      1500
     acgtccctcc cgcaataaat gcgaggcggt tatcagagtc ggtaaacttt caggttggag      1560
     gcccaacaag catagtgcac ggttcaggcc tagcaacacc gaggaccgaa gtcaacgagc      1620
     ttgcccacag gccagataaa gtttgccaaa ttgttaacag ttggaagcta aggtttagtg      1680
     gcagcaaaga gggcttgagt gtagataatt ttatatacag agtacaagca ctcacagagc      1740
     agacactaga ttcgaattat gaggctttgt gtggtaatgc tagtatttta tttgagggaa      1800
     aggctaggga tttctattgg agatttcata aatcggtcag agtagtcaac tgggatggac      1860
     tctgctgtgc tttacggaag caattccggg acacgcgcag cgatgttgat attagagaag      1920
     cgatccgaga taggaagcaa aaagataaag aagatttcga tacatttcat gacgctgtcg      1980
     ttcagcttat ggacaattta gagtatccaa tgccagaacg cgatattgta gatactttga      2040
     gcaggaattt aagacctgaa atccgtcatg agctgttaaa tatcagaatc agctcagtag      2100
     atagcttgcg cgaaatttgt cggcgtagag aaaggttctt agaagatgta aagcgaaatt      2160
     atagctacca aaagacgatt ccgttccgta aaaatgtggc agaactggta gaggaagccc      2220
     aatctgatga tgcgaccgaa ttttcagacg tcgaagtcga cggtgaaata ggtgccatgg      2280
     ctctaatttg ctggaactgt cgccaagagg gccacaggta ccacgactgc gagggaaaac      2340
     gcaaaatctt ttgttttgga tgtggtcgtc caaatacata taaaccttcc tgcgtaaaat      2400
     gtcaaaaaaa cgccaagatg aacacacagc ctcgtcagcc gttgtgtgtt cagcgccaga      2460
     agccgacgaa tccagagacg aaccagtaga aacgccaagt tcaacagacc tactaaattt      2520
     gtccgaaaaa aatcatagtc cgcttacatt ttggccccaa ttagttaaat ctaatcagcg      2580
     tttgccaagt ccgaatccgg tctgtccgaa gaaaagatca aggaatgcaa gcagaataag      2640
     agcgttttgg agtgcggcta aaaccattaa tgccattcgt tataaaaaat acgataaacg      2700
     accttatgct gaggtacggg tgttagatcg agtggtatta gggcttcttg atacaggagc      2760
     ggccatgagt gcgttaggag gaaaattggc tgagcaagtg gtcttgagtc ggattccttt      2820
     taaaagagtg gcaacggtgg caagtacagc ggatggaaag agacaagaaa taataggccg      2880
     tttaaaaatt ccggtgcagt ataagaaaat cactaaggat ttagaactgc atataattcc      2940
     aagcctcagt caggatcttt acttaggaat agatttttgg caggctttcg atcttttgcc      3000
     agccagtatg aatatagcgg aaatagctca ggagtcgcat gatcttacaa ctagccaaca      3060
     ggaaatactc aagtctgtag tggcgctgtt tccatcattc gctatttctg gtttaggtaa      3120
     aaccagcctt atttctcaca cgattgatat aggagacgca aagccggtga aacaaaggca      3180
     ttttcccgtt tccccagcag ttgaaaaact tctatatgaa gaggtagatc ggatgttgag      3240
     tttgggggtg atagaggagt cagatagtgc ctggtcatcg ccggtggttt tggtacagaa      3300
     gccaggaaaa attcgtctct gcttagacag ccgaaaagtc aacgcagtta ccaagaagga      3360
     tgcatatccg ctgccgcaaa tagatggcat tttgggacga cttcccaagg caatgtttat      3420
     atccagtctc gaccttaaag atgcatattg gcagattccc cttgataagg catcgcgaga      3480
     taagactgct ttcactattc cggggaagcc cctttatcaa tataaagtta tgccttttgg      3540
     tcttactaat gcttctcaga caatgaccag attgatggac aaggtaattc cagccagtct      3600
     aaggaacgag gttttcgtgt acttggacga tttgcttatc atatctgaga gttttgaggc      3660
     ccatatgaga gtgttgagtt tagtagcagg ctttgtcaaa acagctggtt tgaccctaaa      3720
     tgtcgaaaaa agcaagttct gcatgcgaag cgtaaaatac ttgggccata ttgttggtga      3780
     gggcgttata cgtactgacc cagagaaaat atcggccatg aaagattttc ctctgccgca      3840
     gtcgctcaag gctctgcgtc gttttcttgg aatggctggg tggtacagga aattcattaa      3900
     aaatttttcc tccgtcacag ccgctctcac tgatctttta aagccgagaa aaaagtttgt      3960
     aatgtcaaag gaaggagaaa gagccttcga gcagctgaag gaaatgttgt gttcggcccc      4020
     agttttgcac agcccagatt ttagtagacc attctttata cactgcgatg cgagcaagac      4080
     aggtgtggga ggcgttttgg tgcaaaaatc cgatgaaggg gatgaatatc caatagcatt      4140
     tgtttcaaaa aaattgaatt ccgcccagaa aagctacacg gtaagtgaac aagagtgtct      4200
     ggctgccatc atttgtataa aacgattccg agcttacgta gaaggtcacg catttacggt      4260
     tataacagat catgcctctt taaagtggct aatgtcacag acggacttgc attcccggct      4320
     agctcgatgg gctttaaagc tccagagttt cgattttaaa atcgagcatc gtagtggaaa      4380
     attgaatgta gtgccagatg cgttgtctag agtaaatgag tcggagttag ctgttttaga      4440
     tgcaagtcag ggtttactag tggaattaga ttcacctgaa tttaaaagtg tagaatactt      4500
     ggagttattg gaaaaggtca aagccaatgc tgagaaactt ccagatctga cagtatctga      4560
     taatttggta tatcgcagaa cagagcatgc cacaggcgaa cccttacacg atgtgtttaa      4620
     ttggaaactt tggattccgc ccaaattagt accagaggtg ctgaaaaagg ctcatgatga      4680
     tccactggct tcccatggag gtattcataa aacattagaa agggtgcgac ggtattattt      4740
     ctggccagga ttggtaaacg atgtaaagag atatattcag gcttgcgata cttgcaagat      4800
     gacaaaagcg ccaaattgta tacaacgacc gctaatgggt acttctccgg aatcccagag      4860
     attcttccag aggttgtttg tagattttct cggaccatac ccccgttcaa ggagtgggca      4920
     tatagggatt tttatagtcc tggatcacta cacgaagttt gtgtttttga aagctgtgaa      4980
     gaaactcaca gcggatgtgg tgatcaaata tatgcagcag gatctttttc ataccttcgg      5040
     agtgccagaa actattgtat ctgacaatgg tagccagttt aaatccgagg catttcaaaa      5100
     gtttctgcgg gaaaataagg taggccatac tcttaccgct gtttattcgc cgcaagccaa      5160
     tgcgtctgaa agggtgaatc ggtctgttat agcggcaatt cgttcttatg ttcgaccgga      5220
     tcagaaagat tgggatgagc agcttagcag catttgttgt gcattgcggt cggctgtcca      5280
     ttcaagtatt ggcacttcac cttactatat ggttttcgga cagcattata tatcttccgg      5340
     ttcgactttt aagctattga ggaatttgca aatgttggaa gataggtcag cgatgtttac      5400
     ccgagaggat tcgttggata taattcgtag taaggcctgc gacgtaatga agaggctaaa      5460
     tgaaaagaac tcgcgccagt ataatctgcg ttccagggat atatcttacg cggaagggca      5520
     agaggtgtat agacgtaatt ttaaacaaag taattttgtg gcgggataca atgccaagtt      5580
     agctccaacg tacttaaagg ccagagttaa aaagagagtt ggccaatcat attacgatct      5640
     agaggacctg caagggaakt atgttggmcg gtatcatgca aaggatatga agcagtagta      5700
     gagctgccct ttgctttggg ttatctgtct tggatgtgta acccccaaga cagatcttta      5760
     gcggggggta tt                                                          5772
//
ID   Gypsy-28_DEl-LTR repbase;    DNA;    INV; 2024 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2024
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 468-468 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2024 BP; 634 A; 379 C; 450 G; 554 T; 7 other;
     tgtagcgctt ggtgcagctg cagatggtcc aacgccatct agatacgaag tgaaaaaaat        60
     cggtggcgcc atctagatct cgatggggag aattggtggc ctggcagggt tagatcawtc       120
     ggggtaacag ggcgaaatgt cagactttcc ctgagtgaga gaatttctcc aattaggtgg       180
     agagataggt tgccgccttt attgcggcgt cactagccgc cattcctaat tgggcatcca       240
     aagtggtcgg ttgagtaaaa agtgtttgaa atcagttaac magtgaaagt gctcgaaaag       300
     cagaggcggc taccaacagc cgcacagtta ccacggcaag ggagcccaga aggaagatcc       360
     cagcgggatt ccggccaagt tcaggggtga gtgagaagtg aatgaggtct tttagatttt       420
     ctaagggggc tcatcttgtt gcataggtgt tggccaaaag gtgccgcccc aagtccaaga       480
     cgcaacccgt gaaattagaa gcaggcacca gttttttttg cagtgctgtg aagccaccac       540
     agcgcaaaag ccaccagwga tcgscgctcc aaagaggaga aggaggagac cacggatgga       600
     cggccggcag aaaacataaa agaaatcagc ggtcaagtca gcgtccggcg ggagagcgag       660
     agtgtcgcaa aattcgtcgg tggtgttgaa agtttcgtcg tgttaagaaa aatggcatat       720
     taattgccaa tagttttatc gtcagcccag ctaaaaaagt taagcagcaa aaagctgcag       780
     tgatgtgcgg aaattagtaa agttaattta gtctaagttt tttttctaat aatttttttc       840
     ggtactcaaa tggagtgagt gattaagtga gtgagaaaat atggaatgtg tggctatcgt       900
     ggtgttgttt tattggtagc ttaaaagaaa aagaaaaacg aattaggctt atattaacaa       960
     aaaaaatagc tcaaaaaaaa aagaataaga attaaaagta ctaacgttca tttagcggca      1020
     tcgggtaatg ttcaaataaa taaaatttct agttcctccc aaacagcaga ctaccgtcgc      1080
     cgaaagcgct ttcatcgatg gatgtttaaa gaaaattggt gagtgaggcc ggagctatta      1140
     attcaataaa tcccgatatt acccctacaa gaatgttcct acattcgcgt atagttatgc      1200
     tgttacaaaa agaaaagaaa taaatcatac gctaccgttc gctagggcct cttgaaaaag      1260
     aaaaatgtaa acaaaggcaa aataaccaaa agaaatttaa atgcatttat atgtttgcgc      1320
     gaacgcaacc cagtcgccgt ttaaaagtat tcctatcctc acgcactatg tcaatcgaat      1380
     actctgcctt aagcaactaa tttgcccgaa ataaatttca ttgtattakg atttaccatt      1440
     aatttcatta gtcgcatttt tgatcattaa tatattttta attattattt atattwaccg      1500
     ttatatacgt tcatacatgt cgattccaat atttatttat ttattcacca taatttttat      1560
     gtctattttt aagagtatta tttcgtctta gttttaataa atatgtttat aatgttctga      1620
     acatcaatat tttttgccgc agctagcatg aagcctctgt agagtaagtt acttgggcct      1680
     aataaggggt catcaataat taagaaaata aaagggtatg atggccatag gtagggcggg      1740
     cagaagacct cctcagtcat cggaggtgaa ctgagacttg tttgggctag aagaaaccaa      1800
     tgtccctctc cwctattctt atatgagttc tctacttccg gttctagtaa gcttgtcttt      1860
     cacgcgaaaa taagttttag gatcaaaaaa ggcatctatg gaatctgaag caagaccacc      1920
     accccctcat tgccgacaag cagcagccgg accaacgctc gcgtgcgctc agttccatgt      1980
     attaccatct cgcctgaact cggaattatt cgtgattcgt taca                       2024
//
ID   Gypsy-28_DMel-I repbase;    DNA;    INV; 5802 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5802
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (16-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A conceptual reconstructed element. Not a consensus. LTRs are 95%
CC   identical to each other.
XX
SQ   Sequence 5802 BP; 2267 A; 1113 C; 945 G; 1477 T; 0 other;
     ggcggccgaa cagcgacccg cacgttaaca gataactagc tgacggcttc acagctcaaa        60
     aaaaaaaagt tcgcgtagtg gccaaatcga ggttaaattc aaaaaagtga ctccggtaca       120
     ttaaattggc cgtcgagaat ttgatcgcag caattttaaa tttaaatatt taaattgccc       180
     atcggcggac cgcaagcttt gttgacaagt ttgcagagca ttttcacgga gtatggacaa       240
     cggagcccca gtagcaccac caaaaaggaa ccaatcagga aaggcggccg cagcagcagt       300
     aatagtatcg tatgttagtg aataagaaaa gttaaacaca aaacacataa aagaaaagaa       360
     attgaattag tgctaaagaa aaaaacctac taaatagtta agttacccaa tcaaaaatta       420
     aaaatattaa ataaaataaa acaaatgtaa taaaaatttt cgcactatta tacaaatttt       480
     tgcacaatta tacaaattga aaatttacac acacacacac caaataaaaa aaaattttat       540
     acttacacaa ttacatttat ataattctaa catttcttca actaaagttg aacacttatg       600
     ccgacaccga atattgttta ctcttcaatt ttattattat ttaaatttaa caaattacaa       660
     atttttaatt tttttaacca actacacttt tttctaaaat acaatacaat ttttttttac       720
     tctttcaatt ttgaccagaa atgttgttaa tggcgaacca aaataattta ttaagaccac       780
     ccatattaaa ctagctatta agctatttct aggtgtttga ccctacattt cgcggataaa       840
     cgtgacttgg gaacactcga atatcgaatg attacaatcg tacaaggtag tcatcagtct       900
     gtggaagaat tttaccaggt tgtttataag cacctatctt taattctgta caaacttggt       960
     tctttgggtc caggcagaga agcggaaatg gtcatgacaa aatcttacag atacagctct      1020
     ggatactttt gtcagaggac tgcgaggtta cttatctcgt ttacttggga taaggaaccc      1080
     acagatctcc caactgcgct acatctgtgc ttaaaactgg aaaaccaatc attccgtact      1140
     aactatgcga ctagtagaat tcaaaacaac aataaccaat ttcgaatcat tgaccaacga      1200
     caaacaagcc taagacctac gccagctcca cttactataa tgacgtcgaa caacccagat      1260
     tatcggcaac cgccaccagt tcctccacgg aacctaccac aaaaaaaacc aaatcaatat      1320
     gcctagatac aataacccta attacggaca acaacgagca cccaatatgg tcggacaaaa      1380
     ttataagcaa ttcgggtacc aaggcagaat cctaatctgc aatttcagca agcttaatat      1440
     gttaatccgt tgcgcccagc agcgcctaag ccaatggaag tggatcccag tattcaaact      1500
     agaatggtaa attacatcaa cagaccacag tttgaaattg gcaaaagacc accaccagca      1560
     cagacaaaca aagtgggcaa cgtcaaagaa attttaatat ccaaacaaat aacaatgatc      1620
     aatcagtgca aatgacagcc gaagcaaatg ctaccataac tgattacgaa caagcaatag      1680
     ccgaccatga agcacaggaa tgctgtgacc aaactttaga agactacatt gatcaagatg      1740
     acgggaccga agacgaaaat aagtatgact actcagcctt gaatttttta gaataaaaga      1800
     ctcctcactt ctctattttg aatgtaaggg gaggagtggt caaatattaa aaaatactta      1860
     ttgacacccg acgtagtaac aaatcccata cccaataaac ccaagtttaa tgctatcact      1920
     gttgggggca gtattcaagt aactcatcat aaaatagcca accttttcaa tcatccgggt      1980
     ataaatcttt tgggattaat gtgccgatca aaggaaaaaa aatgaagcag tcaatagcat      2040
     tttcccaaga acagaccatt taaccgataa acaaagaaaa cacttggacc aacaagtaaa      2100
     aaagtatccg acactatttg ctaaaacaga cgaaagactt acatacacca caaatgtcaa      2160
     ggcagagatc agaacaaata cagacacacc agtgttttcc aaattttacc aataccctat      2220
     tcccctcaga gatgaaaaga acaaacaggt caaagaatta ttggatgacg gagtaattcg      2280
     tccatcccga tcaccataca actcaccagt gtgggttgtt ccaaaaaaaa gcagacgcat      2340
     caggtgaaaa gaaatatcgt atggtcatcg attataggaa acttaacaag gtgactatag      2400
     tggataaata ccctttaccg gatataaacg aggtactggc ccaacttggc aataataaaa      2460
     ttttctcagt tgtggacctt aaaagtgggt ttcatcaaat tccacttaag gaatctgata      2520
     tagaaaaaac agccttctcc gtaaataacg gaacatatga gtttttacga ctcccattcg      2580
     gattgaaaaa tgcgacttca atattttaac gcgcgctcga tgatatactt catgaacata      2640
     ttggtaaaat atgttacgat attattatct ttagtgaaga tagttaatcg cacacccaaa      2700
     gtctcgaaaa aattttcaaa accttgcaag aagctaacat gaaatgccag ttagacaaat      2760
     gcgagagtaa aattctcaga caaaggcatc gagacaaatc cgaataaagt gttggccata      2820
     gccaattatc ctcagcctaa aacggtgaaa gaactacgag catttcttgg cttatctagt      2880
     tattacagaa aatttgttaa ggatttcgct aagatggcaa aaccacttag ctccctttta      2940
     agaggggaag atggacgtgt gtccaagaga gagtctgcaa agaaattaat tgaccttaat      3000
     caagaagcgt tagaagcatt taacaaacta aagaacgcac ttgtatctaa agaggtaata      3060
     ctacaatacc ctgactataa taaagaattc cagctaaaca cggacgcatc taattacgca      3120
     ataggggcgg ttttatcaca gaatgacaag ccaatcgctt tcttgtccag atcactttca      3180
     actacagaat agaattacgc aacaaacgag aaagaaatga tagcgataat atgggcatta      3240
     aaaaaattca aaaattacct gtacggtaaa gcaaagggga aaattttcac tgaccacgag      3300
     cccttaacgc attctcttag taactggaat ggaaacggta gagtaaaaag gtagaaaaac      3360
     tatctcgaag aatacaatca tgaattactt tacagacccg gtaacgaaaa tgttgtagcc      3420
     gacgcgttgt caagaatcaa tgaaataaat tcggttacta ctcagcatag ttcagaaagt      3480
     tctggcgaat atttgattcc gagtattgag gtacctatat ttgcgtttaa aaatcaaatc      3540
     cttataaaaa taaaaactga cacagactac aacttcagca tactgtatcc cacatttcac      3600
     agacacatca taagccaacc agagtacgat aatgaaacac ttgttaaaat actaaaaaaa      3660
     tatcttaatc catcagttaa aaatggaatc tttactgaag aaaaaataat gggagaaata      3720
     cagaaaatcg aacctcaaca cttcagaaac gataaatcga gatttaattg tcaaagacct      3780
     cgcaacagaa gcagaacaag aggaaataat cctccaaatt cataatagag ctcaccgaaa      3840
     taccctagaa aacaatcgca aattttactt tcccaagatg aaacagaaaa tagcggctct      3900
     aataaaacag tgcagagata tctaaaacac ctatccctga atatccagga cagataatac      3960
     acatggatat ctattcgacg gaaaagaaat tagttttaat tgccatagat acattttcca      4020
     aacttgcaca gggcagaata ataaaatcaa aagccatcga agacattgag aaaccattgc      4080
     atgatatttt attctattat ggtgtgccac ggtacgttgt aatggaaaaa tcccttaatt      4140
     ccgctacaat aacttttatg ctcagagacc agtaaggtat tcaaatcttt aaggccccca      4200
     ccttacaaaa gttccgtaaa tggaaggtcg agatatatat atatatatat atcactatat      4260
     atatatatat atattataat atatttataa taaaataaat aatatacagc agcaccctgt      4320
     ccggtctgga aggtgagctg aagggcaagt tctaccccct gactggcatg gagagggccg      4380
     tccagcagca gctgatcgac gaccacttcc tgttcgaacc tccgccataa atattgtcca      4440
     tataattgat cttaatgtca tagaaaatac aattgacaaa ttatcctata acattgaaaa      4500
     tgaattaaaa actaacagtt tgtaccctcc actacaccat gaaataactc aaactttcac      4560
     tgcataccac actattactt taaaatttaa tacacgtcat actagatcta ttaattggat      4620
     cggttcggca tggaagtacg tggcaggaag ccctgatcac gatgacttag ttacaataga      4680
     ataagcactt aacaatataa tttcaaataa caacgaacag gtcagtaggt agcttgagca      4740
     aagacttaat aaactaacaa aaataacaaa cgatcttaca aattcaataa aaaaggacag      4800
     tttcctaagt aatgaaatat cgataagctt acaaaaccag gctaggatta taaaggatga      4860
     aaccaataac attaaatatg caacactttg caagattgaa tatagtaaat acattgcttt      4920
     taagtaaaaa agagttaaaa caagttgatg aaataaatat tcaaattcgg taaattgtca      4980
     caattgtcaa ttgaaaagaa ttttcagatg tatcgatttt ccaaaataaa actatactca      5040
     tttatattgt aaaagtactc aaaattgaag aaaaaaaata tcagaagata atactaaaac      5100
     ctgttgtaaa aaataatgtc atagtgcata tctaaacgaa aattgaattt tcctttttca      5160
     taaagaacta tacggaatac aaaaagattg taaaacattt aataatataa aaatatgtaa      5220
     taagaaccaa attgttaatt taagtaaaaa aactagttca ggccaagaac gcagcatgcg      5280
     acttcagcaa cgctgaccat ataaggaaga tagaaagagt tggcgacggc ataataatac      5340
     ttaacaattt caatggaaca gtcacttgga aagacactaa taccaagtta gtgggcacat      5400
     acgtagttca ttaaatgaca aggagtttga aaatatagaa ataactgtaa tgaaaccggg      5460
     aaccccgatc atccaaataa cgccagcaga agttgaagca gcatcaacaa cactgaacat      5520
     ctaagtcatc taaatgttca aaccacaata gatcgggtca ccctcatctc gctatttgga      5580
     ctggttttat taataagttg gatatttcac gcctacggtc gaaaaaagaa gaatattata      5640
     ctacagatgg cccctagttc acagatcaag gaccttgacc aagggaataa acaaaaggag      5700
     gtacaaccaa aaaacttccg gagcttgatc cacaaataca gttcaacaac attccatact      5760
     tctgatgcct gcttgaggac aagcagaaat taaggaggga gg                         5802
//
ID   Gypsy-28_DMel-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-314
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 729-729 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 314 BP; 97 A; 85 C; 46 G; 86 T; 0 other;
     agttaactac aaaaattgca caacctatct aagctcgcta cattgtaata aaatgctgat        60
     gcgtgcaacc taaattcccc ttccactgcc tctacagcga acacgccata cgctgctgac       120
     cattttccaa aacttctcac tcagcagttt cttgtagctg cagccttgtc gccgctacaa       180
     ctgtcgccga cgccgccgca gccaactcag cttagcttag ggatatcatt gatctaagta       240
     atcagtcaca atcttacatc taaataaaga acaccgaaat tactttgaag tgtttaattt       300
     ataaaacatt aact                                                         314
//
ID   Gypsy-28_DWil-I repbase;    DNA;    INV; 4307 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DWil_;
KW   Gypsy-28_DWil-LTR; Gypsy-28_DWil-I.
XX
NM   Gypsy-28_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4307
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4307
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1161
FT                 /product="Gypsy-28_DWil-I_1p"
FT                 /translation="MTKTKRTPAKNTDKKRAGAEMSRQNETLEKADEIQIQ
FT                 EEKQEVGCITRAREVREALMLDLVEKREENTKENKMEEENNTMLKNLIQLL
FT                 TLKIEADEVKQGDSGIQADDFAKVVPDYDGQSMPVEMWFNNFELNAEAYGL
FT                 TMKQKYVQARSKMTKVAKLFLDSTPVRSYDDLRDQLENEFGMDDVCSANIH
FT                 QKLRERKMQKEETFREYMFHMKSIAAEGNIDMKSVLRYIVDGLNMKNDLKI
FT                 NLYCAQSFRELREKYEIYQHAMEMAKTDVPQGLKKVSQRNYEKKPRCFNCG
FT                 SSEHLRKECNVTTKCFRCNGEGHISKNCPKDCEYWCSV"
FT   CDS           1103..4288
FT                 /product="Gypsy-28_DWil-I_2p"
FT                 /translation="MVRVISQRTVQKIANIGAVYNSKPMETANIGVVQNPK
FT                 RIKEVDIKGCNINALVDTGADVSLVSRSAVEKIGVKSLQKAVKNLVGLGGK
FT                 VTHPLGTFQAEVKVDDVQTVQKFVVVANEDVPYDVVLGYDFMEKFFVTSSE
FT                 AGYKFYPPAGDKTSEDNQLSIFNVTETDSDIDVPSDFENDVRAMINDYKAV
FT                 EYQNVEERTQNAAGLVAESTDAVSLQIVPDGVILPFRQAPSRLPPIEAAAV
FT                 KQQVDEWLNAGIVRRSSSNFASRVVVVKKKDGCYRICVDFRKLNSMVLKDG
FT                 FPVPIIDDVLEKLQAAKFFTVMDLENGFFHVPIEETSKKYTAFVTKEGLFE
FT                 FNKAPFGFCNSPAVFIRYVTNVFQPLLNADVLDLYMDDIIIHATTAEECLN
FT                 KMKKVFDTAAAFGLKIKWKKCHFLKTTVDFLGHTIYDGQIKPGQEKTKAVR
FT                 KFKVPENIKAIQAFLGLTGFFRKFIKGYSIIARPLTDLLRKDVDFRMDAVA
FT                 LKAFEELKRALTVEPVLKLYDRNANTEIHTDASKMGFGAALLQWKDGQLHP
FT                 VWFWSKKSSETEARQHSYILEAKAVYLACQKFRQYVLGIKFKVVTDCAAFK
FT                 QTINKKDVPRDVARWIVYLQDFNFDVEHRAGERLKHVDCLSRYPQGIMIIR
FT                 SETSARFKKAQQEDTMSKALIELLQNQPYEDFKLKGGLLYKTVGGNELLVV
FT                 PKQMEKEIIVEAHNVGHYAMQKTMHAVQQSYWIPHLESKVARIINNCVKCI
FT                 IYNKKFGKKEGLMQVIDKGDRPLETIHVDHLGPLDATSKQYKYIFAMVDAF
FT                 TKFVWLYPTKTTSCEEVLRKLKEWSAIFGNAVRIISDRGSAFIAKDFEEYI
FT                 KSNGIHHVWTTTGVPRGNGQIERVNRSIITIISKLSADEPAKWFKYVPNVQ
FT                 RAINSHVNVSTKRSPFELMLGVQMNNGPENRILKLLQEEVCDKFDEERQSM
FT                 RASAKREITKAQEAYKKQYDSKRKIDNVYKVGDLVAIRRTQFVAGRKLASE
FT                 YLGPYEVIAAKRCGRYDVKKAAADIEGPMLTATSSDNMKYWRNNQDSDELS
FT                 SGSDD"
XX
SQ   Sequence 4307 BP; 1436 A; 730 C; 1045 G; 1096 T; 0 other;
     tttgtgggtt cgtcttcgtg ctgtcggtga atgtaaagac aatcagcgat taagttgtga        60
     aatggttttt aaaagttggt aaaaatcatt taaagttgta agttgctatt ggaaaattcc       120
     cgagaacagt tgtaaaatta aaagagttgt tgttgttgaa caaaatcggt tatgacgaaa       180
     acgaagcgta cgccggcaaa aaacactgac aaaaaacgcg cgggcgccga aatgtcgcga       240
     caaaacgaga ccttggaaaa agctgacgaa attcaaatac aagaagagaa acaagaagtt       300
     ggatgcataa caagagccag agaagtacgc gaagcgttga tgctggattt ggtcgaaaaa       360
     cgagaagaga acacgaaaga gaacaagatg gaagaagaga acaacacgat gttgaaaaat       420
     ttgatacagt tgctgacgct gaaaatagaa gctgacgaag tgaaacaggg tgactcaggc       480
     attcaagcag acgattttgc taaagtggta cccgactatg atggacaaag tatgcctgtg       540
     gagatgtggt tcaataattt tgaactgaat gctgaggcct atggactaac tatgaagcaa       600
     aaatatgttc aggcacgatc taaaatgact aaagttgcaa agttattttt agattcaact       660
     ccagttcgca gttatgatga tcttcgtgac cagttggaaa acgaatttgg catggacgac       720
     gtatgtagcg ctaatataca tcagaagcta cgtgagcgta agatgcagaa agaggaaacc       780
     tttcgggagt acatgtttca tatgaagtca atcgcagcag aaggcaatat agatatgaaa       840
     tcggtactgc gctatatagt agacggtttg aacatgaaga acgacttaaa gatcaactta       900
     tattgcgccc agtcattcag agagctacga gaaaaatatg aaatctatca gcacgcaatg       960
     gaaatggcaa agaccgatgt gccacaaggt ctgaagaaag ttagccagag aaactacgag      1020
     aaaaagcctc gttgctttaa ctgcggatcg agcgagcatc ttagaaagga gtgcaatgtg      1080
     acaacaaaat gttttcgctg caatggtgag ggtcatatct caaagaactg tccaaaagat      1140
     tgcgaatatt ggtgcagtgt ataattcgaa gcccatggag actgcaaaca ttggtgtagt      1200
     acaaaatcca aaacgcataa aggaagtgga cataaaaggt tgcaacatta acgctttggt      1260
     tgacacagga gcggatgtgt ctttggtgtc cagaagcgct gtagagaaga ttggagttaa      1320
     aagtctgcag aaagctgtca agaatttggt tggtctaggc ggaaaagtta ctcatccgct      1380
     tggtactttt caagctgagg tcaaggtgga cgacgtccag acagtccaaa aatttgttgt      1440
     ggtcgcaaac gaagatgtgc cgtatgatgt tgtactcggc tatgacttta tggagaagtt      1500
     cttcgttacg tcgtcggaag caggatataa gttttatccc cctgctgggg ataaaacttc      1560
     tgaggataat cagttaagta tttttaatgt aacagaaacc gattctgata tagatgtacc      1620
     ctcagatttc gaaaatgatg tgcgagcaat gatcaacgac tacaaggccg ttgaatacca      1680
     aaacgttgaa gagagaaccc agaatgctgc agggctagta gcagaatcaa ctgatgcagt      1740
     tagtctacag attgtcccag atggtgttat cttgccgttt cgccaagcac caagtcgtct      1800
     gccgcctatt gaagctgcag cagtgaagca acaagtcgac gaatggctca atgctggaat      1860
     cgttcgccga tcgtcatcca attttgccag tcgagtcgtt gtggtgaaaa agaaagatgg      1920
     ctgctataga atctgcgtgg attttcgaaa gctaaacagt atggtgttga aggatgggtt      1980
     tccggttccg ataattgacg atgtcctaga gaagctgcag gccgcaaagt tttttacagt      2040
     catggactta gagaacggat tttttcacgt gccgattgaa gaaacaagta aaaaatacac      2100
     agcatttgtg accaaggagg gattattcga attcaacaaa gctccgtttg gattctgtaa      2160
     ttcacctgca gtatttatcc gatatgtgac aaatgttttt caaccgttgt taaatgctga      2220
     cgtgctggat ctgtatatgg atgatattat aatccatgca acaacagcag aagaatgtct      2280
     caataagatg aagaaagttt ttgacacagc agcagcgttt ggacttaaaa ttaaatggaa      2340
     gaagtgtcac tttctaaaaa ccactgttga ttttttgggc catacgatct acgatggaca      2400
     aattaagcca ggacaagaga agaccaaagc tgtcagaaag tttaaagtac cagaaaatat      2460
     aaaggcaatt caagcatttc tgggcttaac tggatttttt cgcaagttta ttaaggggta      2520
     ttcaattatt gctcgaccat tgactgatct tttgcgtaaa gacgttgatt ttaggatgga      2580
     tgcggttgca ctcaaggctt ttgaagaatt aaaaagagct ctcactgtcg aaccagtact      2640
     gaaactgtat gatcgcaatg ccaacacaga aattcacaca gacgcgtcaa aaatgggttt      2700
     tggagcagca ttgttgcaat ggaaggatgg ccagttgcat ccagtgtggt tttggagcaa      2760
     aaagtcttcg gaaactgagg ctcgacagca tagctacatt ttggaagcga aagcagtata      2820
     ccttgcctgc caaaagttta gacaatacgt tttgggcatc aaatttaaag ttgttactga      2880
     ttgcgcagcc ttcaagcaga caataaacaa gaaggatgtt cctagagacg tggcgcgatg      2940
     gattgtctat ttgcaggatt ttaacttcga tgtggaacat agagctggag agagacttaa      3000
     acatgtggat tgtctcagtc gctatccaca aggaattatg attatacgat cggaaacgtc      3060
     ggcacgattt aaaaaagcac agcaagagga tacaatgtca aaggctctga ttgaattgtt      3120
     gcaaaatcaa ccctatgaag attttaaatt aaaaggcggt cttttataca aaacggttgg      3180
     cggtaatgaa cttttggttg tcccgaaaca aatggaaaaa gagatcattg ttgaagccca      3240
     caatgttggt cactatgcga tgcaaaagac aatgcatgca gttcagcagt cttattggat      3300
     accgcattta gagtcaaaag ttgccagaat tataaataac tgcgtcaaat gcataattta      3360
     taacaaaaag tttggcaaaa aggaaggatt gatgcaggtg atagacaaag gagatagacc      3420
     tttagaaacg atacatgtgg atcatcttgg gcctttagat gcgacatcaa agcaatataa      3480
     atatatattt gccatggtcg acgccttcac gaaatttgtt tggttatatc caacaaaaac      3540
     aacaagttgc gaggaagtac tacgaaagtt aaaagagtgg tctgctatat ttggtaacgc      3600
     tgttcgaatt atcagtgaca gaggatctgc gtttatagct aaagatttcg aggaatatat      3660
     taagtcgaac ggaattcacc atgtttggac aacaacgggc gtaccaagag gcaacggtca      3720
     gatcgaacgt gtaaacagat ctatcattac gattatttcc aagctgtctg cggatgaacc      3780
     ggctaaatgg tttaagtatg tgccaaatgt gcaaagagct attaattctc atgtcaatgt      3840
     atccacgaaa agatcaccat ttgaactaat gctgggtgtt caaatgaaca atgggccaga      3900
     gaatcggatt cttaagttgt tacaggagga agtatgcgat aaattcgatg aagagagaca      3960
     gtcgatgaga gcttctgcca aacgggaaat tactaaagcc caggaagcat acaagaaaca      4020
     atatgattca aaacgcaaga ttgataacgt atataaagtt ggagatttgg tagcgattcg      4080
     gcgtacacag tttgttgcgg gtcgcaagct tgcgagtgaa tatcttggac cgtacgaggt      4140
     tatagcagct aaacgatgcg gaagatacga tgttaagaaa gcagcagcag atatcgaggg      4200
     gccaatgctc acagctacta gctcagacaa tatgaagtat tggcggaaca accaggattc      4260
     ggacgagttg tcatcggggt cggatgacta agatcaggat ggccgaa                    4307
//
ID   Gypsy-28_DWil-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   scaffold_181145;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DWil_;
KW   Gypsy-28_DWil-I; Gypsy-28_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181145; Positions 1781779 1781491.
XX
SQ   Sequence 289 BP; 91 A; 43 C; 64 G; 91 T; 0 other;
     tgtaagatgt gtgctgggtt gctggtcgtt ttttgtagcc ctggcgaata agagaagagg        60
     tagaaaagtt ggagagagtc gagaagtagc atcgtcggtg gaaagttgtc cgcgagtgaa       120
     gccaaaagtc gtcggcaaaa taagtagaag aatcaagtcg ctttaaaacg ttgtatttaa       180
     ttaagcctaa tttctgaacc ctattgaact aatttgtttt tgtaaactga tatagcatta       240
     aaactctcta tttgttttta taccaataaa tccattacat tccattaca                   289
//
ID   Gypsy-28_DYa-I repbase;    DNA;    INV; 7997 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7997
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1842-1842 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. Terminal regions are similar to
CC   Gypsy8-I_Dya, but distinct.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2299..3399,3354..5693,5730..6119,5971..6411,
FT                 6428..7996)
FT                 /product="Gypsy-28_DYa-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 envelope protein."
FT                 /translation="MSKRTIVDKTRSRLGLRSSGSLPEIREEELIAMDSGH
FT                 ATGGSRTTSPIPGGSNSIGNMSTVLNTSINTTLSTTLNPKDILAFVKQLPT
FT                 FDGTPGTLQKFIVSVEEVIMLIRGTDQTPYGQLLLRTLRNKIIGRADETLN
FT                 MLDTKLEWDSIRDNLKRMYACKKTEPILISEIQNQPNGLSFGKLFYEITRL
FT                 RSELLTLPTNSEQGVSAESKRALYDGICLNAFLVGLRDPLRTVIRAKGPST
FT                 IEQAHEWCQVEQSFMYQRQNRDNNYSNSFDRNRSYQNRSGGRFERNRNYPS
FT                 NNYRQDYRSNNPFRQEESRNYSNRGRNNSRDGSRDPQSNNSGRRNRSPQRA
FT                 PANFNNIDDSVNFQQGASTDKSVTQRKFSTRSLDRQVGYLSNKTPGSALPY
FT                 VTLTLFDPPKLLKFLIDTGSSYSFIDPDIIPQELTRTLDQDVKITTVLDSY
FT                 TLRKATTLPIPREFEEQGVMNLLLFKFHPFFNGLLGIDFLTQNKAKIDIEN
FT                 LTLKTQSASIPIITRTNRGTQELHIPPHSRSRVRLPVDINKGHFSVNAVGI
FT                 SNNLTITGGLYTAIDGHSYFEVTNNSHDERTLCLDQPIEVTPYNEDEYNQI
FT                 YSMTLGPNPNEKYKQPIDHIRTEHLNSEEKKGLLLVCNKFRELFYDEKETL
FT                 TFSNAVKHSIPTTDDMPVHVKTYRYPYIHKEEVRSQIKKMLEQDIIRNSHS
FT                 PWGAPVWVVPKKTDSDGNKKWRLVIDFRKLNEKTIADRYPIPNINEILDSL
FT                 GRATYFTTLDLASGFHQIQMNPEDRAKTAFSVENGHYEFTRMPFGLKNAPA
FT                 TFQRVMDNVLGSLIGNICLVYLDDIIIFSTSLQKHLGDIELVFTKLRTANL
FT                 KIQITKSNFLRKEIDFLGHVVTQEGIKPNPNKIIAIKGFPCPKTRRQIKSF
FT                 LGLIGYYRKFVKDFARITKPLTRQLKGGKSVIIDNEFREAFEFCKTLLIND
FT                 PILKHPDFTMPFTLTTDASNVALGAVLSQGPKSCDRPICFASRTLNEAETR
FT                 YSTVEKEMLGIVWAVKYFRPYLYGRKFKLVTDHKPLLGLKNFNGQNAKLIR
FT                 WRDALSEYDYELEHEKGSQNVVADALSRVEPNTHVNVSVPNDPEQSRYPRV
FT                 HLTSLDYRPPLQSHQTHHAQPVPHAETKLGDRYPNLSLTNPIKPSRVRNRR
FT                 NFRIIQESYSKYFAGTNLYKILRCLTFLKEPSSNEIESIIETGHTNNNHRG
FT                 VDEMYTHLKREIYAPHLKSLITQAIRNCEICLTLKYDRHPQKPPQQRLDPQ
FT                 WPHPCVRKNSQVQQRTKASSHKQFGIARSASPSNMIGTRRNRPSSASTLSG
FT                 RTHVFEKTVKFNNEHDFLSRLHEYQSKLYPVVKTHLEETASKRINKLNEAR
FT                 EDPLTLPVGSSVFRKENRRNKITPRFSKHKISRDNGVTVRTIKKQKIHKQK
FT                 IRKISLPTNPPPRNSPLYRLTLVNSQRLEINRLGEEQTLIKLNMGTARTIT
FT                 SFMTIKHLIHLEEYEVTTDKLHELITNLPDLPNIVEIRTLLLRKLNQIEQK
FT                 LTSLLPSESNSRPRRGLINGLGTIIKTISGNMDATDEEKINSELKQLGRNA
FT                 ENTAQFQNETLIRFMEITDHINKEQEVINNFINFNQNRISKEIDTGLQDAE
FT                 LNIFLTRININLDLLYTHLAGIAESLLFAKLNIVPKYILDNAEIQKIKMSL
FT                 TDQNVKIKADYEVYNLLSLETSTEKKTIVFEIKIPILSPNNYTLYQIVTIP
FT                 FNGTEIVNLPKFILEDRIELKTLNTNCIRVNDLSVCETPTDPDNPECIHNL
FT                 LANKTATCTVVETITQTRIYSPIEGLLVILNARDVNMTSDCIPSKSLSGSF
FT                 IINHDSCSITINGTKYADATVTMTDRWQMDITKTNDVKTMPAVEPINLQQL
FT                 HLSTLKTKWAINTMQSKAADHLTTIYILIASSIVLAIAAWIWRKDKIIYAT
FT                 TSLPTTGTPAIPSLWPSFRLEGG"
XX
SQ   Sequence 7997 BP; 2900 A; 1844 C; 1444 G; 1808 T; 1 other;
     ggaaaaggaa cctaaaggag atccaggaca tccaggcccc agaagaagga tatgaagatc        60
     accgggatat tcttaaatat tatactgtaa cgcaggtaag cagccggcca agtgacttca       120
     gtaagtgagt gcaaatgtaa aataaagaaa gaaacgaaat taaaaagaat gcagtgcatc       180
     cgaacaaatt gtaaattccg tgcgcttaaa agaaaaacaa ccgactccga acatacataa       240
     atacctttat acacaagaac aaatatgcag aaccagcaaa ttacggtgtg cggaagcaaa       300
     ataaacggca ttaacaattg tgcattacac acgcaaatct agaggcatat taataaatat       360
     atattaaaac gatcatcaat cgctgatgac tgtaaggcat cgagcattaa aaaaagtgaa       420
     cactaaatat gcgacgaaac aaatatacta ttaaacccta aaattcacaa tttaaatttc       480
     gtactacata catactacgt actacgtagc gcctaatatg taccacaaaa aaataaaata       540
     aataattttt acacaaaaat ttatggaaac atatttttag caacgatcaa tcgctgattg       600
     ccgctataaa atgcatcgcg cattaaaata tgtacacgcc taatatgtac cacaaaaaaa       660
     taaaataaat aatttttaca caaaaaaatt tatagaaaca tatttttagc aacgatcaat       720
     cgctgattgc cgctataaaa tgcatcgcgc attaaaatat gtacacgcct aatatgtacc       780
     acaaaaaaat aaaacaaata atttttacac aaaaaaattt atagaaacat atttttagca       840
     acgatcaatc gctgattgcc gctataaaat gcatcgcgca ttaaaatatg tacacgccta       900
     atatgtacca caaaaaataa aacaaataat ttttacacaa acaattttta tggaaacata       960
     tttttagcaa caatcaatcg ctgattgccg ctacataatg catcgcgcat taaaatatgt      1020
     aaacgcctaa tatgtgccgc aataaaaata ataataaata attttgcata ttacacaaaa      1080
     attttctatg gaaacatatt tttagcaaca atcaatcgct gattgccgct acataatgca      1140
     tcgagcatta aaatatgtaa acgcctaata tgtgccgcaa taaaaaataa taataaataa      1200
     tttcgcatat tacacaaatt tttttttatg aaaacatatt tttagcaaca atcaatcgct      1260
     gattgccgct acataatgca tcgagcatta aaatatgtaa cgccttatat gtgccgcaat      1320
     aaaaaaaaat aatttcccat attacacaaa gaaaaattat agaaacatac ataggcggca      1380
     atcaataata attaatagcc gctcatgcat cgcgcataaa tatgtgaata tagccacact      1440
     gaaaaaaagg gaaacgaaac ctatgtgccc caacttaaca aatgctagtg ctccgccacc      1500
     taaattaatg cttgtgtgta tataagtgcg gccgatcatt tctttctgtg tgccggggaa      1560
     gaaaggggaa accggcaccg acagcagttc gtagggagcc cccctccagg cctcggcaac      1620
     cgcacttaac agtcgaccac ttgagtttgt ttacgtgggc acacatactt gcatgcacgc      1680
     cgcagcgtcc ggccgctaca ttgtagacgg tgtcgcatga caacataaaa ctatattcag      1740
     taaaatcgac aaaacgaccg ccgcggagtc ggatgctttt gcgcaacgga tgctaaaata      1800
     aaaatataca aataatcaaa ttttacgact gcagtgcaca atgtatcaag aaaacactta      1860
     gaaaaaaaga gaaacactgc actgaaacca cttggctcgg cggctttatt agattacttt      1920
     ttatcgattg agtaaacaat tattaatgac acccacttgc agatcccaac ggatcaaccc      1980
     atacactaca caataaaaaa ttttttacga atgataagta caaacaaaca aagaaaaaca      2040
     taaataaaac atcgtaatat ataaaatctt acattagcac acaaatacat atatatatat      2100
     atattttttc catactatta cacatacaca ttttttatac tctagtagta taaaatatca      2160
     atatacagat aaccaaatat cgtcaaagat agataggaaa aattaaaaag ggaaaataaa      2220
     aaaagaaata ggccgaatat cttaacgtta tacttacgcg aattttcact tgcgaataaa      2280
     aggggttccg taacctaaat gtcaaagagg acaatagtgg acaaaacgag gtccaggcta      2340
     ggtctcagga gtagcggtag tctaccagaa attagggagg aagaattaat agccatggat      2400
     tcgggacacg ccaccggggg ttctagaacc accagcccga tccccggcgg ttcgaatagt      2460
     atagggaata tgagcactgt cctgaatact tcaattaata ctactctgtc cactacattg      2520
     aatccgaaag atattttagc atttgttaaa caactaccga ctttcgatgg gaccccgggg      2580
     accctacaga agttcattgt aagcgtggag gaggtcatta tgttaattag aggaactgac      2640
     caaacacctt acggacagct attgctgcgt acgttgagga acaagataat agggagagcg      2700
     gacgaaactt taaatatgct ggatactaag ctggaatggg atagtattcg cgacaaccta      2760
     aaacgcatgt acgcatgcaa aaagacggaa cccatactaa tatctgaaat acagaaccaa      2820
     ccaaacggtc tctccttcgg gaagcttttt tacgaaatta ccaggctcag gagcgaacta      2880
     cttacactgc caactaattc agaacagggg gtcagtgcgg aatcaaaaag agccctctat      2940
     gatggcattt gcctaaatgc ctttttagtc gggctccgcg acccgctcag gacagtcatt      3000
     cgggctaaag ggccgtcgac cattgagcag gcccacgaat ggtgccaggt ggaacaaagt      3060
     ttcatgtacc agagacaaaa tagggataac aactatagta acagcttcga ccgtaacagg      3120
     tcttatcaaa atagatcagg cggacgcttt gagcgtaacc gcaattaccc ctcgaacaat      3180
     tataggcagg actataggag taataaccct ttccgacaag aggagtcccg gaactacagt      3240
     aatagggggc gtaacaactc cagggatgga tcacgcgacc cgcaatcaaa taactcaggt      3300
     cggcgtaaca gatcccccca aagggccccc gccaacttca ataacattga tgacagcgta      3360
     aattttcaac aaggagcctc gaccgacaag tcggttactt aagtaacaaa actcctggct      3420
     ctgcccttcc ctatgtaaca ctgactcttt ttgacccccc caaactccta aaattcctta      3480
     ttgacaccgg gtcatcctac tcatttatcg acccggacat tattccccaa gaattgacgc      3540
     ggacacttga ccaggacgta aaaataacca ctgtcttgga cagttataca ctaagaaaag      3600
     caacgacact acctataccg agggagttcg aggagcaagg ggtcatgaac ctcctgctct      3660
     tcaaattcca cccctttttc aacgggctcc tcggtataga cttcctaact caaaataagg      3720
     caaagattga tattgagaat ttaaccctca agacacaatc tgcctcaatt ccaataataa      3780
     cacgaactaa caggggtaca caggaattgc acattccacc ccacagcaga tctcgcgtca      3840
     gactgcctgt agacattaac aagggacatt tttccgtcaa tgcagtgggt attagtaaca      3900
     accttaccat cacggggggc ctctacacag ctatcgacgg acacagttac tttgaggtaa      3960
     ctaacaactc tcacgacgaa cggacactct gcttagacca accaatagaa gttacaccgt      4020
     ataatgaaga cgaatacaac caaatctaca gcatgacact ggggcccaac cccaatgaaa      4080
     aatacaaaca accaatcgac cacatccgga cggaacacct aaactcggaa gagaaaaagg      4140
     gactcctcct cgtctgcaac aagttccggg agctgttcta cgatgagaag gagactctca      4200
     ccttttcgaa tgccgtcaaa cactcgatac caacaacaga cgatatgccg gtacacgtga      4260
     aaacatacag gtatccttac atccataaag aggaggtacg gagccaaata aaaaagatgc      4320
     tagaacagga tataatccga aatagccact caccttgggg cgcacctgtc tgggttgtac      4380
     ccaagaaaac cgactcggat ggcaataaga aatggcgact ggtcatagat ttcaggaaac      4440
     tgaatgaaaa aaccatcgcc gatcgatacc ccattcccaa catcaacgaa attctcgata      4500
     gtttaggccg tgccacgtat ttcactacct tggacctggc aagtgggttc catcaaatcc      4560
     agatgaaccc cgaagacagg gctaaaacag cattctcggt cgaaaatggc cattacgaat      4620
     ttactagaat gcccttcggt ctaaagaacg cccccgccac atttcagcgt gttatggaca      4680
     atgtcctagg ttcattaatc ggaaatatat gcctagtcta tctagacgac atcataatat      4740
     tctccacttc attacaaaaa catttggggg atatcgaatt agtcttcaca aaactccgta      4800
     cggccaatct aaaaattcaa atcaccaagt cgaacttcct acgaaaagaa atagacttcc      4860
     tgggtcacgt ggtcacccag gagggtatca aaccaaaccc taataaaata atagctataa      4920
     aaggatttcc ctgtcccaag acccgtcggc aaattaagtc tttcctggga cttataggct      4980
     attacaggaa atttgtaaaa gacttcgcgc gaattactaa accactaacc agacaactaa      5040
     aaggagggaa gtcggtaata atcgacaacg aattccgcga agccttcgaa ttctgcaaaa      5100
     ctctccttat aaacgacccc attttgaagc acccagactt caccatgccc ttcaccttaa      5160
     caacagacgc gagcaacgtc gcattgggag cagtgctgtc acaaggacca aaatcctgcg      5220
     acagaccaat ctgcttcgcg agcaggaccc ttaacgaagc cgaaacccgt tactcaacgg      5280
     tagaaaaaga aatgctggga atcgtctggg cagtaaagta cttccgaccg tacctctacg      5340
     gccggaaatt caaactagtt actgaccaca aacccttatt aggcctmaaa aattttaatg      5400
     gccagaacgc aaaactcatt cgctggaggg atgccttaag cgaatacgat tacgaattgg      5460
     aacacgaaaa gggttcccaa aacgtcgtcg cagatgcact gagcagggta gaaccgaata      5520
     cccatgtgaa tgtctcggta ccaaacgacc cggagcaatc ccgatatccc cgagtccact      5580
     taacgtcttt agattacagg ccacctttac aatctcacca gacccatcac gcacaacctg      5640
     tgccccatgc agaaacaaaa ttaggagaca gatatccgaa cctctcttta acttagaaat      5700
     tgttacggat atcttaaaaa ctttgctaaa acccaataaa acctagccgt gttcgcaacc      5760
     gacgaaattt tcggataata caagaatctt attccaaata tttcgcggga accaaccttt      5820
     ataaaatcct caggtgctta acgttcctta aggaaccctc aagcaacgaa atagaatcga      5880
     ttatcgagac aggccacaca aataataacc atcggggggt ggacgagatg tacacccacc      5940
     taaaaaggga aatttacgcg ccccatctga aaagcctcat cacacaagca attcggaatt      6000
     gcgagatctg cctcaccctc aaatatgata ggcacccgca gaaaccgccc cagcagcgcc      6060
     tcgaccctca gtggccgcac ccatgtgttc gaaaaaacag tcaagttcaa caacgaacat      6120
     gacttcttaa gcaggcttca tgagtatcag agtaagctct atccagtcgt caaaacacac      6180
     ctagaagaaa cagccagcaa acggataaac aaactaaatg aagctaggga agaccccctt      6240
     actctgcctg tcggaagctc ggtcttccgt aaggaaaaca gaaggaacaa aattactccc      6300
     aggtttagca aacataaaat ttctcgagat aatggggtca ccgtgcgaac aattaaaaag      6360
     cagaaaatac ataaacagaa aattaggaaa atctcgttac ctacaaaccc ataaaattaa      6420
     aaactgacca cctcggaatt ctcctcttta caggctgacg ttagtcaata gccagcgact      6480
     agaaataaat agactaggtg aggagcaaac cctcattaag ctcaacatgg gaacggcccg      6540
     gacaataaca tcatttatga caatcaaaca cctgatccac ctggaagaat acgaagttac      6600
     tacagacaaa ttacacgaat taattacgaa cctgccggac ctgccgaaca tcgtcgaaat      6660
     aagaacacta ttacttagga aacttaatca gatagaacag aaattaactt cacttctacc      6720
     tagcgaaagt aatagcagac ctaggagagg actcattaac ggactaggga caataatcaa      6780
     aacgatcagc ggcaatatgg atgccactga cgaagaaaaa attaattccg aattaaaaca      6840
     attggggagg aacgcggaaa ataccgcgca atttcagaac gaaacattaa taaggttcat      6900
     ggaaatcaca gaccacataa acaaagagca ggaggtcata aataatttca tcaattttaa      6960
     tcagaatagg atatctaagg aaatagatac aggactccaa gatgcagaat tgaatatatt      7020
     tttgactaga atcaatatta acttagatct tctctacaca catttggcag gtatagcaga      7080
     aagcctatta ttcgcaaaac tcaatattgt ccccaaatac atcttagata atgctgagat      7140
     acaaaaaatc aaaatgtcat taacagatca aaacgttaag ataaaggcag actacgaagt      7200
     ttacaaccta ctatcactcg aaactagcac agaaaagaaa acaattgttt ttgaaattaa      7260
     aataccaatt ttgtctccaa ataattacac actgtaccaa attgtaacca taccgttcaa      7320
     cgggacggaa attgtaaacc taccaaaatt tattttagag gatagaatag aacttaaaac      7380
     actaaacaca aattgtatta gagttaatga tttatcagtt tgcgaaaccc ccaccgaccc      7440
     cgacaacccg gaatgcatcc ataacctgct agccaacaag acagcgacat gtaccgtggt      7500
     ggaaaccata acccagacac ggatctacag ccccatagaa ggactcctgg ttatcctcaa      7560
     cgcaagagac gttaatatga cctccgattg tataccgagc aaaagtttga gcgggtcgtt      7620
     tattataaat cacgacagtt gctccatcac catcaacggt acgaaatatg ccgacgccac      7680
     cgtcacaatg accgatagat ggcagatgga tataacgaaa accaacgacg ttaaaaccat      7740
     gccagccgta gaacccatca accttcaaca actgcacctc agtacgctca aaaccaagtg      7800
     ggctatcaac accatgcaga gcaaagcggc ggaccacttg acaacgatat atatattgat      7860
     cgcaagctct atcgtactag caatcgccgc atggatctgg aggaaagaca agattatcta      7920
     tgcaactact tccctgccaa ccaccggaac tccagctata ccttcgttgt ggccctcgtt      7980
     ccgtcttgag gggggag                                                     7997
//
ID   Gypsy-28_DYa-LTR repbase;    DNA;    INV; 367 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-367
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1843-1843 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 367 BP; 121 A; 107 C; 74 G; 65 T; 0 other;
     gagttatcgg tgacggcaca agcatgcctt cacctccccc gaaaccccca cgggcagcga        60
     cctacatatg agacactcaa cccggacaca caccgcagca aagtcatcaa cccacactgg       120
     atcagcagag tcaggattcc caagaatcca accgaagcac tggaaggggc atccggataa       180
     aaagtgccga cgcaaggggt ttcgcagacc aaaagaattg tacgctaggc ttagaggaaa       240
     atttattctg aaaataaaat cattctgtca ccgaacttca aacgagtcgc tttaattact       300
     acaaaatcct ccttggctta aatacaaaac cgaacagatc ctcgcccacg acataactgg       360
     cgcagcc                                                                 367
//
ID   Gypsy-28_HeAr-I repbase;    DNA;    INV; 6328 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6328
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5576-5576 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..5461
FT                 /product="Gypsy-28_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="METGNGHGRLETPRSSRSLTRRSHSRERSRXRSRGVR
FT                 DRELALRREQEKVRLLELALQRERDAEQRRKHSERXSERRSERRSERRSER
FT                 RSERRSERRSERRSERRSEHHSERRSEHRGEHRRERRSEHRNRRRSVDRGE
FT                 HEMRSRSRSRASVEHRTKRSCTPTFTTNDVVKLFKNIRDVIPSQPSNQCLP
FT                 SISKGFDKNILPEFNPSQKNQRMDTWLKKVNECAEVYGWDGRTTVHFAMQK
FT                 LSGLAKTWYESLNSILFTWEEWQIKLMSAFPCEQNYGQLLEDMLKRKSRPN
FT                 ELVENYYYEKLALLNQCDITGRRAVDCIIHGISDKTMRSSALALRCDEPDQ
FT                 LLKFLLSNNKELPTHPFFNRDKVGASSDDRQSFRPNSKSNPNVYCYNCKEK
FT                 GHPFSKCTKPLVKCSTCNRIGHKAETCRSKSEMGNSKTDTITKTMRIKNSN
FT                 PNNKFIKSVKIGDDIVEAFVDLGSEASLIRKTTFSKLGLQHDNIPIPLTGF
FT                 GNKLIYSLGSAKFKISVDDIEADVVFRVVDDVFLEKPILVGQTYSEQPHIA
FT                 LYKDAHKLNFLCNSNDTSTFDVIEDGDKIRIRSAAHNVLFGPASIRALTHK
FT                 EFTGNLILDSKIVGKPNDQYLVCGGIYEAKDSLLFVTLTPCSTPCRVLENF
FT                 VFSRAERVEAVYRLTEVAKSIEGQFFENNVGEGFDEKDVHIGDSISESDKE
FT                 KLLELLRRHKECFASTLGDLGCTTTTEMKIELNSQRPVVYRPYRLSHFERE
FT                 KVRAMIDEMLQAGIIRESASNYASPIILVRKKDGNIRLCVDYRLLNSVTVK
FT                 ERYPIPVIDDEIARLSGQAWFITLDLMSGYYQVPIAEESKHLTAFVTPDGQ
FT                 YEYNRMPFGLANAPAVFQRMMNNVLGSARFEKATVYIDDLLIYGKDPSECM
FT                 KRLEDILQLLREANLKLNLSKCSFLQNRINYLGYEISAEGMRPGMSKIQSV
FT                 ADFPRPENIHGVRQFLGLVSYFRRFIQGFAQLAHPLTKLLKRDTVWNWSTD
FT                 QEEAFSVLKRKLISRPVLTIYDPSAEFELHADASKLGVGGILLQRPKGSEG
FT                 SFHPVAYYSRQTTPEEKNFHSYELETLAVICSLKKFRVYLLGKTFKVVTDC
FT                 SALRSTFGKRDLIPRIARWWLAMQEFDCVVEYRAGTRMNHVDALSRNPIRD
FT                 IDTQNCQQYPTVMAISEGDWLLTLQLGDSELCRIRDIVGSDLDAKGIEYIK
FT                 ENYVIRDNKLYRYVDRNKDSVRFVVPKGARWQVCKMNHDDLGHVGFEKTYE
FT                 RIKRNYWFAKMKRFIRKYVSACIDCAFAKKNETSREGLLHPIEKVAIPFHT
FT                 LHVDHLGPFVKSKRGNTHILTVVDSFTKFVFIKPVRNTNTQNLIKALRDIF
FT                 DTFRVPDRVISDRGSCFTSHSFRRFCLDQGIRHVLNAVASPRSNGQVERYN
FT                 RTILDSLTAENLRDDERNWDDKLGKIQWGLNNTMQKTIGRSPAEVMFGSKM
FT                 NSEKNSAMNEIVINTREDEDVDSIRVEVKDRIDKCQVAQKLYYDKGRRPAR
FT                 VYKNGELVKITKVAFHNNGKSTKLMPNYEGPYKVIKILGNDRYKVAPIAGF
FT                 EGMRNKKKTTVASDRMKPWIHVASLEIEDVVDEDDAPDDGDDAMSSD"
XX
SQ   Sequence 6328 BP; 1996 A; 1200 C; 1442 G; 1681 T; 9 other;
     tctcagaagt gggataaaga aaacgtaagt acacgcctac atctattttt acttttatat        60
     ttgataatct gttttgcaat aatcacgcta acctaactgt taaaaatatt attcaagagg       120
     tacatacata gttgtacctg cctattccac aatttttaat acatgtattt tacttattta       180
     ttttacttak ggccgatttt tcaatcgccg gatggctctt gtctgaggag tgtgtttgac       240
     agcttttgta cagaaaatat gtcaaaccgc catatttatt ccttagatgg aagttagctg       300
     atgattgaaa aatcagccca tgcggacaac tttcttcagt aatatggaat ccaaatatcc       360
     caattcaaat actttgcatg taccacatag ttatttaaac cttgcggatt catttatatt       420
     atttttgcat ctmacccgta tacagggtat attaatgatt gaaaaaacaa maccaacata       480
     aaaaaaaaat atattgcagg ggtwtataaa aggggtgaaa aaacgtgtta tttttgtcgt       540
     cagacttacc gtttacgaga tatcttaagg tttagttctc ttactaaaak ctacaatttt       600
     gttcgacgag tttcagaaaa tggagactgg aaatggccat ggcaggctag agacccctcg       660
     aagcagtcgt tcactcacac ggcgtagcca cagccgcgag cgcagccgca stcgcagtcg       720
     cggagtacgg gaccgcgagt tggcgctcag gcgggagcag gagaaggttc ggctcttgga       780
     gttggccttg caacgagaac gagacgccga acagcgcagg aagcacagcg agcgccwcag       840
     cgagcgccgc agcgagcgcc gcagcgagcg ccgcagcgag cgccgcagcg agcgccgcag       900
     cgagcgccgc agcgagcgcc gcagcgagcg ccgtagcgag catcacagcg agcgccgtag       960
     cgagcatcga ggcgagcatc ggagggagcg ccgcagcgag catcgcaacc ggcggcgcag      1020
     cgtggaccgt ggcgagcatg agatgaggtc aaggagtcgc agccgagcca gcgtcgagca      1080
     tcgcactaaa aggtcatgta ctcccacttt cactactaac gatgtcgtga aattatttaa      1140
     gaatattaga gatgtcattc catcgcagcc gtcaaatcaa tgcttaccct caatcagtaa      1200
     aggtttcgat aaaaatatac ttccagaatt taatccatct cagaaaaacc aacgtatgga      1260
     cacgtggtta aaaaaggtta acgagtgtgc agaggtttac ggctgggatg gaagaactac      1320
     agtgcatttt gcgatgcaga aactctcggg acttgcaaaa acatggtacg agagtcttaa      1380
     ctcgattttg ttcacctggg aggaatggca gataaagttg atgagtgctt ttccctgtga      1440
     gcaaaattac ggacaactcc ttgaggatat gttgaagcgc aaaagtcgtc ccaatgagtt      1500
     agtcgagaat tattattacg agaaattggc cctccttaat caatgtgaca taacgggtag      1560
     gcgcgcggta gactgcatca tccatggcat aagtgataaa actatgagat ctagcgcgtt      1620
     ggcgttgaga tgcgatgagc cggatcaatt attaaaattc ctactaagta acaacaaaga      1680
     actcccgaca catccatttt ttaacaggga taaggtgggt gcctcctctg atgaccgaca      1740
     aagtttcagg cccaatagca agagcaatcc aaatgtgtat tgttacaact gtaaggagaa      1800
     aggacaccct ttctctaaat gtacgaagcc tttagtgaaa tgctcaacgt gtaacagaat      1860
     tggacacaag gctgaaacat gtcgctctaa atctgaaatg gggaatagta agactgacac      1920
     tataacaaag acaatgcgta taaagaactc aaatccgaac aataaattca taaaatcagt      1980
     taaaattggg gatgatatcg ttgaagcctt cgttgatcta ggtagtgagg ctagtttaat      2040
     acggaaaact acattttcaa agcttgggct acaacatgat aatattccaa tcccactgac      2100
     tggttttggt aataaattga tatattcctt gggttctgct aagtttaaga taagtgttga      2160
     cgatattgag gccgatgtcg tatttagagt agtagacgac gtgtttttag aaaaaccaat      2220
     acttgttggg caaacttatt cagagcaacc acatattgcg ttgtataaag atgcgcataa      2280
     gctgaatttc ttatgtaata gtaatgacac ttcaactttt gatgtcatag aagacggtga      2340
     caagataaga atcagatccg cggctcataa tgtactattc ggtccagcca gtattagagc      2400
     tttaacgcac aaggaattca caggaaattt aatactagac tctaagatag taggtaagcc      2460
     aaatgatcaa tacttggtat gtggtggtat ctacgaggcc aaggatagtc tcctttttgt      2520
     cacattaacg ccgtgttcga caccatgccg ggtgctagaa aatttcgtct tttcgcgagc      2580
     cgaaagagtg gaggcagttt ataggctcac ggaggtagca aagtccatcg aaggtcaatt      2640
     ctttgagaac aatgtgggcg agggtttcga cgagaaggac gttcacatag gcgattctat      2700
     atctgaaagc gacaaggaaa aactgcttga attgttacgt cgccacaaag aatgttttgc      2760
     atccactttg ggtgatctgg ggtgcacaac aaccaccgaa atgaaaatag aactgaacag      2820
     ccaacgtcca gtcgtctata gaccgtatcg actttcgcac ttcgaacgtg aaaaggtacg      2880
     cgccatgata gatgagatgt tgcaggcggg aatcattagg gaatctgctt ccaattacgc      2940
     gagtcccata attcttgtcc gcaagaaaga tggcaatatt cgactatgcg tcgattaccg      3000
     attactaaat tcggttacgg tgaaggagag ataccccata cctgtcatcg atgatgagat      3060
     tgccagactt tctggacaag cgtggttcat tacgttagat cttatgtctg ggtattatca      3120
     agtccccatc gcggaagaaa gtaaacacct gacggcgttt gtcacgccgg acggacaata      3180
     cgagtacaat cgtatgccgt tcggcttggc aaacgcgcca gcagtattcc agcgaatgat      3240
     gaataacgtt ctaggttcag ctaggtttga gaaggctact gtgtatatag atgacttgct      3300
     aatatacgga aaggatccgt cggaatgcat gaaacggtta gaagatatat tacagttgtt      3360
     acgggaagcg aatctaaaat tgaatctgtc taaatgcagt tttcttcaaa acaggataaa      3420
     ctatctgggc tacgaaatta gcgctgaggg tatgcggccg gggatgtcaa aaattcaaag      3480
     tgttgcagat tttccccgtc cggaaaatat acacggtgtg cggcaattct taggtctggt      3540
     gagctatttt agaaggttca tccaaggctt tgcacaatta gcacaccctc tcactaaact      3600
     gcttaaaagg gatactgtgt ggaactggtc caccgatcaa gaagaagcat ttagtgtttt      3660
     aaaacggaaa ctaatcagta gacccgtgct gacaatatat gacccctctg cagagtttga      3720
     actgcatgct gatgcgagta aactgggtgt aggagggatc cttttacagc gcccaaaagg      3780
     gagtgaaggt tcttttcatc ctgtggccta ttatagccga cagacgaccc ctgaggaaaa      3840
     gaactttcac tcatacgaac tggaaactct agctgttata tgctccctta aaaagtttag      3900
     agtatacctg ttaggcaaaa cttttaaggt cgttacagac tgcagcgcct tacgttccac      3960
     gtttggaaaa cgcgacctaa tacctaggat tgcccgatgg tggctcgcta tgcaggaatt      4020
     tgattgcgtc gtggaataca gggcaggtac aaggatgaac cacgttgacg cattatcgag      4080
     aaatcctata cgagatatag acacgcaaaa ttgtcagcag tatcccacag tcatggccat      4140
     aagtgagggc gactggctac ttactctgca gctaggagac tcggagcttt gtcgaattcg      4200
     cgatattgtt ggaagcgact tagatgctaa agggatagag tatattaagg aaaactatgt      4260
     tatacgggac aataagctat accgatacgt ggatagaaat aaggactctg ttagatttgt      4320
     ggtgccgaag ggtgcaagat ggcaagtttg caagatgaac catgacgacc tagggcatgt      4380
     tggttttgag aaaacttacg aacgtatcaa aagaaactat tggtttgcca aaatgaaacg      4440
     gttcatcaga aagtacgtat cggcgtgtat cgattgtgct ttcgcaaaga aaaatgaaac      4500
     ctctcgagaa ggattattac atcccatcga aaaggttgcg attccttttc atacgctaca      4560
     cgtcgaccat cttggaccct ttgtcaaatc aaaacgaggc aacacacaca tactgacggt      4620
     ggttgactct tttacaaagt ttgtatttat taaaccagtg aggaacacaa atacccagaa      4680
     tcttattaag gctttaagag acatctttga tacgtttaga gtccctgacc gtgttatcag      4740
     cgatcgaggg tcctgtttta cctctcattc gttcaggagg ttttgtctag accaggggat      4800
     aaggcatgtt cttaatgcag ttgcgagccc caggtcaaac ggacaagtcg agaggtataa      4860
     cagaactatc ctcgattcct tgacagcaga gaacctaaga gatgatgaaa gaaactggga      4920
     tgacaaatta ggaaaaatac aatggggctt aaacaatact atgcaaaaaa caattggtag      4980
     gtcacctgca gaggttatgt tcggatctaa aatgaatagc gaaaagaatt cggcaatgaa      5040
     tgaaatagta attaatactc gtgaagacga ggatgtagat tcaattcgtg tagaagtcaa      5100
     ggataggata gataaatgcc aagtagctca gaaactatat tacgataaag gacgccgacc      5160
     agcacgtgta tataaaaacg gggaactggt taaaataact aaagtcgctt ttcacaacaa      5220
     cggtaaaagt acaaaactca tgcctaatta tgagggaccg tataaagtta ttaaaattct      5280
     gggcaacgat agatacaagg tagcccctat tgccggtttt gagggaatga ggaataagaa      5340
     aaagaccact gttgcttcag acaggatgaa gccgtggatt cacgtagcgt cattggaaat      5400
     agaagacgta gttgatgagg atgacgcccc tgatgatggc gatgatgcaa tgtcttctga      5460
     ttgactagtt gataaacaat tacctaagtt tcaaaagata tttattaatg ttttatttaa      5520
     ttatgttgta aattattcga gagatggcta catacctaca tatatgtttt atttttctgt      5580
     ttcaggtcaa gcatgagsca tcaaacggat acgccgtgac ttgacctgtt acatggatgg      5640
     ttattggtta atctacaact gacttaatca aatggaaggt ggttagttag ttgatagatt      5700
     tggattgtta ttggatggac gggtaataca aatactcatg gttcgattga taataattga      5760
     aggatggtta ccagtcttgt tctcggaaat tcaggctcgt agcgttaccg cgtgtctgga      5820
     ttttgcatgg ctaatttctc ttagacattt ttatgttcaa atttaaaatg tatagttttg      5880
     gttttagaca aattgtatct agttaacacc aaatcatact tacactwatt acctagtaca      5940
     aaacttacaa ctggatagcc aaaatagtca attgtattaa gtataaaaat aactaatgtt      6000
     aactgtaggt ttagaaatac ggtagtctaa tataatagca atcaacaaac tatatacgac      6060
     aatcaaaaca cgaagcctgt aaaatatgcg attcttgcaa aacaaacatg catgcactgt      6120
     aaaatactat acatagatgt ttctaaaaat aacaaaatat agatcaaaac atttaattat      6180
     acttatagta tcactttata ttaggtcaaa caaaatatta tgcaattgaa atgattattg      6240
     tgtaagcaaa atgttcccac ccacttgccg agtgtaaggt tccacctggg ttgtgtatga      6300
     gggcatacac aatgtcagga tggacgag                                         6328
//
ID   Gypsy-28_HeAr-LTR repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-346
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5606-5606 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 346 BP; 84 A; 52 C; 77 G; 133 T; 0 other;
     tgtaaggttc gaaatgtttt tcacgtttat tttatccttt taattacgaa ttctgatgct        60
     ttagaatttt tattatggca acatttcaat ttgaggagat tttacttttc gccatctggc       120
     aacaccggaa attgatttga acggaataag atcaggtggg ggcattctgg ctcggaccgt       180
     tgaatcgtgc ggttgcgtca agttgttcaa gtgtaagacg taaattggtt ggctggataa       240
     ttttcaaggc tggattgtta tttgttttgg tttactaaat atattcaagt ttgaacgaag       300
     aacctttgtt tcctgttcgt gcccttactt ctgaggtagt cctata                      346
//
ID   Gypsy-28_LMi-I repbase;    DNA;    INV; 6589 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6589
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(127..1266,1170..1802,1763..3460,3054..4178,
FT                 4341..5093,5097..5828)
FT                 /product="Gypsy-28_LMi-I_1p"
FT                 /translation="MSTPMQPPPGLTLPRQPVVSSILMSVSSSHNARLPHL
FT                 SGHSPQDIFTSPQFNNAVPQRCDSGFVTPQTLSSAPFYATPPFECSQLFRA
FT                 SDNASYNMDFVQNSNVQPPAATPGTPMYHSAGHVPSLQRPGGLRTFASSSA
FT                 VHQSVPFELRQPSYCTHVCAEHCANFASAPPHASLSPAAPPPPPPTSVPVQ
FT                 LPHSVHPVNIPRYDPSYDPHSFIHCANSANVCATQHVLPCAVPPGVPSATR
FT                 SGPLPHPNFAGLSTVAPAPPGASAAPCDASAPSPIADADAAAPPPLPGSPP
FT                 SLPPGRLPKLPQFSFDSPTTWFALIERIFEHYNLDDSARYLCLITSLHDHV
FT                 DLICDLVTSPPVRTAMTVLKRQSWSVSPSLWRRLFDTPGYLPPSQDRYDSA
FT                 KKTILERVTQSVEETVRHIIEEENLGDKRPSELWRRLRLLVSEQVMPDPSL
FT                 MAIWTSKLPLAVQTALMYSVLESPSERIRIADRVHEAHLRESRLAQSAAPS
FT                 LAPRPPTFARGRSRFPKEIMDPPGIPRRIVTAMLQPLPAPEGISSGEEDTP
FT                 PSPPRFPQEQRPHYPYCFFHARFGSAARKCRSPCSYPNEVGGLVVPLQLPK
FT                 RGGRAGLGATACPEDCRRLPTLHSVRTVAAAGARLYVTDLNSGINFLIDTG
FT                 ADVSLLPPGLSPNPVRPTNMLLRAVNASQLRCSGSTTLQVRLSPSRVFEWD
FT                 FLVASVPEPILGIDFLSFHGLSPDVIRRAVFHSPSNTFIECAPSSCANLSV
FT                 IRECLDTVTELGSTIDKLRAEQVQVEQLRRERLSVIRECSDTVAKLQSAID
FT                 KFNSEHAQVEQLRRERLDLSRRLAENQSALDSARQVLEQLSGPTPHKSQVS
FT                 HSAALPRVPSEPPPTSELLPSPSISPAPPRSYAEVCKDNSKLSPRSRAPQT
FT                 VAPSNSAQNRRSCIRSSAPRVTFLNKPTVFTVPVSTNSSEVSQCVPVSTPA
FT                 SASRKSSVKHSCARHPTELNCTNRLAGPRCDVGNAVSPPARVASPATRSAA
FT                 RALPPHPSAPAPVSLTPTLAASISSAPRTPACAPPVANTRTKRSQSRLNCS
FT                 AAASSTPAAATAAVSAPRAPTPRPQWPPRHLRLLFRLLPPSSLTASRQLLQ
FT                 VGRLHARRLQLLRYLLTAAGSVTPARCATPTSPAVILRNCRRARHVLRALR
FT                 RSPLPSPRRHVHPPARRLWPTRAPSARSRGSTVLRLPRQLRPLPPPLCRRH
FT                 ARRLHAPSGHLVTYGSCFVCCRHPLSRPRGNYFKSAGYTRAACSYCATSSP
FT                 PPALSHLRGVPRPPLQLSFCATAVAPATSSAPSATPSPASQVAVVTNGTVH
FT                 RLRLTDNVPVFSKPRPLCPKKLAAVDAQLSELLSTGVIERSCSSWASPIHL
FT                 VKKHDGTWRMCGDYHKLNAKTIMDRFPIPNVTDFSKLLAGSKVFSVVDCKR
FT                 AYHQIPMAPEDIEKTAITTPLGLFQYRFMPFGLKNATQTWQRFISEVLQDL
FT                 KFCFVYLDDILIFSSSVEENKRHLQIILDRLAEAGIELNDDKRQLHLPSVQ
FT                 FLGYTVSSEGVAPPPPPRGALDGPNDESFNALKELLARAITVAHPHPDAEV
FT                 FLTTDASDTAIGAVLSQSHDGVISPLQFFSKKLNNAQRKYSAFDRELLAIY
FT                 EAIKHFRAELEGRPFHVLTDHKPLAAAIKNPPADPPPRRFRYLDYIRNSQR
FT                 TCVTSRARIMWWRISSLGSMLSLPSSISLTFPPCNPLTMISLLSSLTLPLP
FT                 YIPSAPPFRASPARYGAMTRRANSVPSFPALFNVPFSRSCTSSRTRVSKPR
FT                 HAWCASVSFGATGGIARPGPALVSRVSGTRSHLTPPLPWFIPSSVRQIPAR
FT                 PLGSCWSSAAGRRLPVHPFMIDRTTRWMEATPLLNITAESVARAFISPGLL
FT                 ALAAPRSSQLTRDANSRVPFSPISVTFAAFAGSTPPPIIRRATGWWSGGTG
FT                 PSKRPFGATGPLARRPSSGPPWPAFDLQGGPPWHRCGIRIRATTHLTGRAC
FT                 RPIPAPLARGSPFLVDRVRLICAAASPPLLPATLLPCKGTFGPADLRVRVL
FT                 A"
XX
SQ   Sequence 6589 BP; 1191 A; 2323 C; 1500 G; 1574 T; 1 other;
     gtggtgaccc catactaaaa cggttctacg cgttcggtac agtgttgtcc cgcggttttc        60
     ggcgtgttcc ttcgaccgta attcgctcgc gctcggtacg ccaacaatcc cgcgcccaag       120
     tgcaacatgt cgacgcccat gcaaccgcca cccggactca cacttcctcg gcaacctgtg       180
     gtttccagca ttctcatgag tgttagcagt tcgcataacg ccagactgcc gcacttgtct       240
     ggacattcgc cacaggacat cttcacatcg ccgcagttca acaatgccgt gcctcagcga       300
     tgtgattctg gctttgtcac tccacagacg ctttcgagtg ctccttttta tgccactcca       360
     ccgttcgagt gctctcagct cttccgtgct tcggacaatg ccagctacaa catggacttt       420
     gtgcaaaatt caaacgtgca accgcctgcc gccacgccgg gtacgccaat gtatcactcc       480
     gccggtcacg tgcccagcct ccaacggcca ggtgggctac gaacttttgc ttcttcgagt       540
     gctgtgcatc aaagtgtacc atttgaactt cgccaaccta gttactgtac acatgtttgt       600
     gctgaacatt gtgctaactt tgcgagtgca cctcctcatg caagtttgtc tccagcagct       660
     cccccccccc ccccccccac ctctgtaccg gttcagctgc ctcactcagt gcatcctgtg       720
     aacattccgc gctacgatcc ttcctacgac ccccacagtt tcatccactg tgccaactct       780
     gcaaacgtgt gtgctacaca gcatgtgcta ccgtgcgccg tgcctccggg tgtgccttcc       840
     gcgacgcgaa gtggtcccct tccacacccg aactttgccg gactttcgac cgttgctccg       900
     gcgccgcctg gcgcctctgc cgcgccatgc gacgcttccg cgccttcgcc gatcgccgac       960
     gccgacgctg cagcgcctcc gccacttcct ggctcgcctc cttctctgcc gccaggccgc      1020
     ctgccgaagc tgcctcaatt ttcattcgac tctccgacca cctggtttgc tctcatcgag      1080
     cgtatattcg agcattacaa tttggacgac tccgctcgct acctctgttt aattacttcg      1140
     ctgcacgacc acgtggatct gatttgtgac ctggttacct cccccccagt caggaccgct      1200
     atgacagtgc taaaaagaca atcctggagc gtgtcaccca gtctgtggag gagactgttc      1260
     gacacataat tgaagaggag aaccttggtg acaaacgtcc atctgaacta tggcgacgcc      1320
     ttcggctctt ggttagcgag caggtcatgc ctgacccctc gctcatggca atctggacaa      1380
     gtaaactccc tctggctgtg caaacagcat taatgtacag cgtgctcgag tcccccagtg      1440
     agcgtattcg cattgcggac cgagtacatg aagcgcatct tcgagaatct cgtcttgcgc      1500
     aatccgccgc gccgagcctc gcaccacgcc cacctacctt cgcgcggggc cgttcccgct      1560
     tcccaaagga gatcatggat ccgcctggca ttccgcgccg catcgtcact gcaatgctgc      1620
     aaccgctgcc agcaccggag ggcatcagct ctggcgaaga ggacacgccc ccttcccctc      1680
     cgcgcttccc gcaggaacag cgacctcact acccgtattg cttttttcac gcccgttttg      1740
     gcagtgctgc aaggaagtgt aggtcccctt gcagctaccc aaacgaggtg ggcgggctgg      1800
     tctaggcgcc accgcctgcc ctgaagattg caggcgccta cctactctcc actctgtgcg      1860
     caccgtcgcc gctgcaggcg ctcgtctcta tgttactgat ctgaactctg gcataaactt      1920
     cctcatcgac actggtgctg atgtctcact tctgcctcct ggactgtctc cgaaccctgt      1980
     gcgaccgacc aacatgcttc ttcgagctgt caatgcctcg caacttcgct gctcgggctc      2040
     cacaactctc caagtcaggc tctcaccttc gcgcgtgttc gagtgggatt ttctagtggc      2100
     cagtgttccc gagcctattc tcggaattga ctttctctca tttcatggac tatctcctga      2160
     tgtcattcga cgtgcagtgt ttcactcccc ctcaaatact tttatcgagt gtgctccatc      2220
     gagctgtgct aatcttagtg taattcgtga gtgtttagac actgtcaccg aacttggtag      2280
     taccattgac aagttacgtg cggaacaagt gcaagtcgag caattacgcc gtgaacgcct      2340
     cagtgtaatt cgtgagtgct cagacactgt ggccaaacta caaagtgcca ttgataagtt      2400
     taattcggaa catgcgcaag tggaacagtt acgacgcgaa cggctcgacc tgtctcggcg      2460
     gttggctgaa aatcaatccg cgctcgactc tgcaagacaa gtcctcgagc agctgtccgg      2520
     ccccacgccg cacaaatcac aggttagtca cagtgctgct ttgcctcgtg ttcccagtga      2580
     accccctcct acttcggaac ttttgccttc tccgagtatt tctcctgctc ctccccgctc      2640
     atacgcggag gtctgcaaag acaatagcaa gctctcgcct cgttcgcgtg ctccacaaac      2700
     tgttgcgccc tcgaactctg cacaaaacag acggtcgtgc attcgttcga gtgctccgcg      2760
     agtgactttc ctgaacaagc ccactgtgtt cactgtccct gtctcaacaa actctagtga      2820
     agtgtctcag tgtgtgcccg tcagtactcc tgcttctgct tcccgcaaat cctctgtcaa      2880
     acattcatgc gcacgccacc ctacagagct taattgcacc aaccggctcg ccggccctcg      2940
     ctgtgatgtt ggcaatgctg tctcccctcc agctcgcgtc gcctcgcctg ccactcgctc      3000
     agctgcgcgc gcattgcctc cccaccccag tgctccggct cctgtttctc tgactccgac      3060
     gctcgccgct tccatctcct cggcgccacg tacacccgcc tgcgcgccgc ctgtggccaa      3120
     cacgcgcacc aagcgctcgc agtcgcggct caactgttct gcggctgcct cgtcaactcc      3180
     ggccgctgcc accgccgctg tgtcggcgcc acgcgcgccg actccacgcc cccagtggcc      3240
     acctcgtcac ctacggctcc tgtttcgtct gctgccgcca tcctctctca cggcctcgcg      3300
     gcaactactt caagtcggcc ggctacacgc gcgccgcctg cagctactgc gctacctcct      3360
     caccgccgcc ggctctgtca cacctgcgcg gtgtgccacg cccacctctc cagctgtcat      3420
     tctgcgcaac tgccgtcgcg cccgccacgt cctccgcgcc tagtgccacg ccctcgcctg      3480
     cctcgcaagt agctgtcgtc acgaacggca cggttcacag actgcgcctc actgacaatg      3540
     tccctgtgtt ttctaaaccg cgccctctgt gtcccaaaaa attagccgca gttgacgcgc      3600
     agttatctga actactgtca accggtgtga tcgagcgatc ttgtagcagt tgggcctcmc      3660
     ccattcactt agtaaagaaa catgacggca cgtggcgcat gtgtggcgac tatcacaagc      3720
     tcaatgctaa gactattatg gaccgcttcc cgattccgaa cgtcaccgat ttttccaaat      3780
     tacttgccgg atctaaagtt ttctcggttg tcgattgcaa gcgtgcttac catcaaattc      3840
     ccatggcccc tgaggacatt gaaaaaacgg ccatcaccac cccgctcggc cttttccagt      3900
     atcgtttcat gcctttcgga cttaagaacg ccacacagac ctggcaacgg tttatcagtg      3960
     aggttttaca ggacttaaaa ttttgcttcg tgtacttaga cgacattcta attttcagct      4020
     cctcggtcga ggaaaacaaa agacatttgc aaatcattct tgacaggctg gccgaggcag      4080
     gaatcgagtt gaatgatgac aaacgccaac tgcatctccc ctcggtacag ttcctcgggt      4140
     atacagtctc gtcggagggc gtcgcccccc cccccccttg acaaggtcaa ctcggtgcaa      4200
     aacatcacgc gcccctccac ttacaaagag cttcgtaggt tcctcggcac cattaactac      4260
     tacaggcggc acctgcccaa cgcggctgag gttcaggccc cccttacaga cgcgttggct      4320
     ggcaagcaca cgtcaggtga ccgcgcggtg ccctggacgg accaaatgac gaatcattca      4380
     atgcactcaa ggaattactt gctcgagcga tcacggttgc tcatccgcat cccgacgcgg      4440
     aagtttttct cactactgac gcgagcgaca ccgccatcgg tgcagttctc agccaatctc      4500
     acgacggtgt aatctctccc ctgcagttct tttccaaaaa attaaacaat gcacaacgca      4560
     agtactcggc ctttgacagg gaacttcttg ccatctacga ggccattaag catttccgtg      4620
     cagaacttga aggtcgcccc tttcacgttc ttaccgatca caaaccgctg gctgctgcca      4680
     tcaaaaatcc cccggctgac ccgcccccta ggcgcttccg ctacctcgac tacattcgca      4740
     attcacaacg gacgtgcgtt acatcaaggg cgcggataat gtggtggcgg atttcctctc      4800
     tcggatcgat gctgtctcta ccgtcatcga tctctctaac ctttccgccc tgcaatccgc      4860
     tgacgatgat ctccttgctc tcatctctga cccttcctct tccctacatc ccatccgcac      4920
     cacctttccg ggcgtcaccg gcgaggtatg gtgcgatgac tcgacgggca aactccgtcc      4980
     cttcattccc cgctctcttc aacgtcccat tttccagaag ctgcacgagc tcgcgcaccc      5040
     gggtgtcaaa gcctcgacac gcctggtgtg cgagcgtttc gtttggcgcg acatgaggcg      5100
     ggattgccag gcctgggccc gctcttgtgt cgcgtgtcag cggaacaagg tctcatctca      5160
     cacctcccct cccttggttc attccctcct ccgtccggca gattccagca cgtccacttg      5220
     gatcttgttg gtcctctgcc gccggtcgac ggttaccggt acatcctttc atgatcgacc      5280
     gcaccacgag gtggatggag gccacacctc tgcttaacat cactgccgag tccgtcgctc      5340
     gtgctttcat ttctcctgga ttgctcgctt tggctgcccc tcggtcatca caactgacca      5400
     gggacgccaa ttcgagagtg cccttttcac caatatctgt cacttttgcg gcattcgccg      5460
     gatccacacc accgcctatc atccgcagag caacgggctg gtggagcggt ggcaccggac      5520
     cctcaaaacg gcccttcggt gccacgggtc ctttggctcg acgcccttcc tctggtcctc      5580
     cttggcctgc gttcgaccta caaggaggac ctccgtggca ccgttgcgga attcgtatac      5640
     gggcaacaac tcaccttacc gggcgagctt gtcgccccat ccccgccccc ctcgctcgag      5700
     gatctccctt cctggtcgac cgagtccgcc tcatctgtgc tgcggcctcc cctcccctcc      5760
     tgccagccac tctcctcccc tgtaagggta ccttcggacc tgcagacttg cgagttcgtg      5820
     ttcttgcgtg atgacaccgt ccgcccgccc ttacagcccc cttactctgg tccttatcct      5880
     gtcctccttc gtgcagcaaa cacctacacc atcctcctca atggcaaacc ttccgctgtc      5940
     tccatcaatc gcctgaagcc cgcgcacctc gatcctgctt cccctcccga ggtcgaggct      6000
     ccctcctctt ccttctcctc gttcgaggct ccccctccct ctccctcctg cgctcccccc      6060
     ccctccttcg ccgtcgggtc acgcaccacc ttcggtcgtt gactcctctt cctcctctcc      6120
     gtcctccccc ttcagaggat tctctcgtcc cctcccccct ccgatccctg ctatcaattc      6180
     tccgtccccg ttcccccgcc ctcacaacag agctgtccgt cgtggtgcgc gactataacc      6240
     tattcattat gtgcacgtcg tccactaaat gcgagctcat taaatgtttc cagctggccc      6300
     gtgattccgt tccttccgag gctcgggcct tcctgctccc gtcgagcact gtgctagtcg      6360
     tagttccggt ctgtggctcc cgctcgagcc ggcgactctc gcgacagtca cgctgcctcc      6420
     tcgattacag aacttcattg ttcgaggccc taccgcacgt cggctacctc cccctcctgt      6480
     ctaccggatg ggacaacaga actcactgtg tgtgtgatgc cctcgcgtgt gctcctcccc      6540
     cccccccccc ggctctcagg agtactccgt actggggggg ggggggctg                  6589
//
ID   Gypsy-28_LMi-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-216
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 216 BP; 45 A; 47 C; 52 G; 71 T; 1 other;
     tgtggcggcg ctagccacca attcgagtgt gtgtgtatcg accatggtca cgaaccgagt        60
     ggcacatctt atgacaatct ttggtgttgt ttccttggta ttatccgcca tgtttaaatc       120
     agttggtgtt tgtackctgt gttgacagca tcaataaagc tattgttctg taaagtgtgt       180
     ggtcattggg ctccactgcc cttagtaacc tccaca                                 216
//
ID   Gypsy-28_MoPha-I repbase;    DNA;    INV; 3950 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-3950
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1107-1107 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..844
FT                 /product="Gypsy-28_MoPha-I_1p"
FT                 /translation="MPDSLDDTVIEMAAPEVERANVHRVALKMPPFWADEP
FT                 ELWFAQIESQFTLSGITQDATRYAYVVSHIETRHAKEIRDLITRPPADHKY
FT                 ESVKRALIQRLSISQEQQIRQLLEHEEIGDRKPSQFLRHLQSLAKNAIPEQ
FT                 LLRTLWMGRLPAQLQAILATRTADNLEEVAAQADRVFEITGRSGAVASLQP
FT                 ATATPSTIEQQIKELAQQVASLNDRFSRSANKTRQRERSQSRNRKKQEDNI
FT                 CYYHRRFKGKAKKCTAPCEFKKQEEEN"
FT   CDS           826..3930
FT                 /product="Gypsy-28_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EARRGKLSGQPIVAAYGPSPQPRRLFVTDRDTKLQYL
FT                 IDTGSDVSVYPRTMTRGRRLIDSRELYAANGSPISTYGDLTIQPNLGLRRD
FT                 FTWRFMVADVTTPIIGSDFLAHYHLLPDVKSGQLIDAKTGIKANGTTRKYE
FT                 LRSIKAMIGNSPYHQLLEKFPVLTRTTGTYCQKQVHNTMHHIKTTSGPPEA
FT                 CRPRRLAPDKLKIAKAEFDLLLKEGIIQPSKSPWASPLHMAPKKDNAWRPC
FT                 GDYRKLNARTVPDQYPIPHIEDFTHSLEGKKIFSTLDLVRAYNQIPVHPQD
FT                 VPKTAITTPFGLYEFLYMPFGLRNAAQTFQRFINEVTHGLDFCYVYIDDIL
FT                 VASSSEEEHLKHLGELFSRLDSYGIQLNPAKCVFGANEIKFLGYSVSAQGT
FT                 QPLPEKVQAIQDFKKPETIKQLRQFLGTLNFYRRFIPKAAQDQTTLHDVLK
FT                 GPKTKGKTPIQWTPQLEQAFQNCKNSLARATLLAHPKMEATITLTTDASDT
FT                 AMGAVVHQEINGERQPLAFMSKKLNQAQTKYSPYDRELLAIYSAVKYFRHL
FT                 LEGRKFTIFTDHKPLVYAFQQDVLRSSPRQARHLDFISQFSTDIQHVAGKD
FT                 NVVADTLSRVESVQQAPDFEELAKSQQEDPELKEILDGTAQSSLKIVATQI
FT                 PGSTTMLYCDTTTPIKRPYVTGPYRKQIFQALHGLSHPGIKATTRMVTQRY
FT                 VWPSIRKDCHTWAQACIPCQKAKVHKHTASPTGNFLGPTRRFEHIHMDIVG
FT                 PLPSSRGYKYCLTIIDRFTRWPEAIPISDITAETVSKQLLVHWITKYGTPA
FT                 RITTDQGRQFESELFKKLTQLTGSKHLRTTAYHPAANGMIERFHRQLKAAI
FT                 KSHETEDWVAVLPIILMGVRAAWKEDLQATPAEMVFGESIRLPGQFFEDSG
FT                 MPDNSEGFAAQLGKMMKNLRPRVKRHGERTTFVHKDLQKTQQVFLRHDTPG
FT                 GALQATYDGPYPVLSRGEKMFKIRINGRAANVSIDRLKPAYVLEQEESGSK
FT                 QSEQPPVEPAEKRTRSGRLSRPPVRFEGL"
XX
SQ   Sequence 3950 BP; 1227 A; 1094 C; 927 G; 702 T; 0 other;
     caaattggtg accccgacgt gatctgtgag gatatccacc atgccggatt cactggacga        60
     caccgtaatc gagatggcag cccccgaagt cgagcgcgca aatgtccacc gagtggcatt       120
     gaagatgcca cctttctggg ccgacgagcc ggaactctgg ttcgcgcaaa tcgagagcca       180
     attcacattg agtggaatta cgcaggatgc cacccgctac gcctacgtcg tgtcgcacat       240
     agaaacacga cacgccaaag aaatccggga cctcattact cgaccgccgg cggaccacaa       300
     atacgagagc gtgaagaggg cgttaatcca gcgcctatcc atctcacaag agcagcagat       360
     ccgccaactc ctggagcacg aggagatagg ggacagaaag ccgtcgcagt tcctacggca       420
     cctacagtca cttgccaaaa acgccatacc tgagcaactc ctacggacac tgtggatggg       480
     cagacttccc gcgcagctac aggccatcct ggcaactcgc acagccgaca acctggagga       540
     agtcgcagca caagccgacc gagtcttcga gatcacggga agatcaggag cagtcgcgag       600
     tctacagcct gccaccgcca caccgtctac gatagagcag cagataaaag aactggccca       660
     gcaagtggcc agcctgaacg atcgtttttc acgcagtgcc aataaaacta ggcagcgtga       720
     gaggtcacag agtcgcaacc gaaagaaaca agaggacaac atctgctact accacaggcg       780
     tttcaaaggg aaggccaaga aatgcacagc accgtgcgaa tttaagaagc aagaagagga       840
     aaactaagtg ggcagccgat agtagcggcc tacggcccca gcccgcaacc acgccgccta       900
     ttcgtcaccg atcgcgacac taagttgcag tacctcatcg acaccggttc agatgtcagc       960
     gtctatccac gcacgatgac cagaggacga cgtttgatcg attcccggga attatatgcg      1020
     gctaatggat ccccaatatc gacatacgga gatctcacaa tccagccgaa cttgggactg      1080
     cgacgagact tcacatggcg attcatggta gcagacgtaa ccacacctat catcggttcc      1140
     gacttcctgg cccactacca cctcctcccg gacgtaaaaa gcggacaact tatagacgcg      1200
     aaaacgggaa tcaaggcaaa cggaaccaca cggaagtacg agctacggtc aatcaaggca      1260
     atgataggaa actcacctta tcaccagttg ctagagaaat tccccgtctt aacacggact      1320
     acaggaacat actgccagaa gcaggtgcac aatactatgc accacataaa gacaacgtcg      1380
     ggacccccag aagcttgtag accacgaaga ttagcaccgg acaaattaaa aattgccaag      1440
     gctgaattcg accttctact taaagaaggg attatacagc cttcgaaaag tccgtgggca      1500
     tcgccgttac acatggctcc gaaaaaagat aatgcatgga gaccctgcgg cgattataga      1560
     aaactcaacg cacgaacggt tccggatcaa tatcccattc cgcacatcga agattttacg      1620
     cactcactgg aaggaaagaa aatcttctct acactagatt tggtccgggc atataatcag      1680
     attccagtgc accctcaaga tgtaccaaaa acggccatta caactccgtt cggattgtac      1740
     gagttcctgt acatgccttt tggactccgc aatgcagccc agacgttcca acgcttcatc      1800
     aacgaagtca cgcacggatt agatttctgt tacgtctaca tcgacgatat cctggttgca      1860
     tccagctctg aggaagaaca ccttaaacac ttaggggaac tgttcagccg tcttgacagt      1920
     tacggcatac agttaaaccc agcaaaatgt gtgttcggag ccaacgaaat caagttcctg      1980
     ggatactccg tctcggcaca aggaactcag ccgttgccag aaaaagtaca ggcaattcaa      2040
     gacttcaaaa aaccggagac cattaaacag ctaagacaat tcctgggcac gttgaacttc      2100
     tacagacgat tcatcccaaa ggcagcacaa gaccaaacca cgcttcacga cgtgctgaaa      2160
     ggaccgaaaa ccaaagggaa gactccaatc caatggacac cgcaactcga acaggcgttc      2220
     caaaactgca aaaatagttt ggcaagagca acacttctgg cacatccaaa gatggaggcg      2280
     acaattactc tgacgactga tgcatccgac accgcgatgg gagcagtagt tcatcaggaa      2340
     atcaacgggg aacgacagcc cttagccttc atgagtaaaa agctcaacca ggcgcagaca      2400
     aagtacagtc catacgacag ggagttacta gcaatatact ccgccgtaaa gtacttccga      2460
     catcttctcg agggcagaaa atttaccatc ttcacggacc acaagcctct agtatacgct      2520
     ttccaacagg acgtcctccg tagctcgccc agacaagcaa gacacttaga cttcattagc      2580
     caattttcca cggatattca acatgtggcc ggcaaagaca acgtggtggc agatacattg      2640
     tcacgcgttg aatctgttca acaagccccc gatttcgagg aactggcaaa gtcgcaacaa      2700
     gaggatccag agctaaagga aatactcgat ggcaccgcgc aatcctcact caaaatagtt      2760
     gcaacgcaga taccaggctc cacgacgatg ctgtactgtg acaccacaac gcctatcaaa      2820
     cgcccatacg tcacgggacc atacaggaag caaatatttc aagctctgca tggcctgtca      2880
     caccctggca tcaaggcaac aacgaggatg gtgacacaac gctatgtgtg gcctagcata      2940
     cggaaggact gccacacatg ggcacaagca tgcataccgt gccaaaaagc gaaggtgcac      3000
     aaacacacag cttcgcccac cgggaatttc ctgggaccta cgaggaggtt cgagcacatt      3060
     catatggaca ttgttggacc tttgccatcg tcccggggat acaaatactg ccttacaata      3120
     atcgacagat tcacgagatg gccagaagca ataccgatct cggatatcac agcagagacg      3180
     gtatccaaac aattgctggt gcactggatt actaagtacg gaacgccggc acggattaca      3240
     acagatcaag gacggcagtt cgagtccgag ctattcaaaa agctcacaca acttacagga      3300
     tccaagcacc tcagaaccac agcttatcac ccggcagcca atgggatgat agagaggttc      3360
     cacaggcaat taaaggcagc aatcaaaagc cacgaaaccg aagactgggt agcagtactc      3420
     ccgattatac ttatgggcgt cagagccgcg tggaaagaag acctgcaagc cacgccagcg      3480
     gaaatggtct tcggagaatc aatccgtcta cctggacaat tcttcgaaga ctccggcatg      3540
     ccagacaact cagagggttt tgcagcccag ctggggaaga tgatgaaaaa ccttcgacca      3600
     cgagtcaaga ggcatggaga gagaaccacc ttcgtacaca aggacctgca gaagacacaa      3660
     caagtcttcc tgaggcacga cacaccagga ggagctctac aagcaacgta cgacggccca      3720
     taccctgtcc taagcagagg agaaaagatg ttcaagatcc gcataaacgg acgagcagcc      3780
     aatgtctcca tcgacagact aaaaccagca tacgtcctcg agcaagagga gtcaggatcc      3840
     aagcagtccg aacaacctcc tgtggaacca gcagaaaaac ggacgagaag cggacgatta      3900
     tcacgtcctc cagtccgttt cgagggactt taagacaacc aagggggtca                 3950
//
ID   Gypsy-28_MoPha-LTR repbase;    DNA;    INV; 1137 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1192-1192 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1137 BP; 253 A; 382 C; 295 G; 180 T; 27 other;
     tgtggcggca cgccacagcg cgacgcgcgc gcgcgcgcac gcagcgtcca cggccgggtc        60
     agcggccccg gcgaccgcga gtagtgcgcg cggccgccac taggcgaaag cgcggcgcct       120
     caactcacaa gaagaaatgt aacatcaggt ttacataagc agaccaccca cggcgtgaaa       180
     tcaagccaag cttcacgtat agmgagctca agagggccta tactacgctt gcaagtamtt       240
     tttggaggwa gtaccaacgg gccccggtgw wtctgacatt cggcacgggc gagctctctg       300
     gtacgackag kaactcctcc gggagactac mgscawtstg ccccgctgmc gccgacccgg       360
     ccgccgtggc cctagggcca atccggtgag gccggacatc aggagccctg cgaagccgct       420
     gggagcccag gmgccgccaa ttacgaagag cagcgtcccg tggcgactca tccggattgc       480
     tttccscccg gagaagcmcc ggggtcmgck wccccggccc ckagktcttc cacgccatcc       540
     tccggtccac wgggcgacgc agaccgccag tcgasggaaa atcacccgag cttcgcagac       600
     cacaacaacg ggtcctgcgg tttctattgg csggtccacg cagactgcaa ccggccctct       660
     cagamcgaac caccaggggc acgcaggcct cctccgacga gtttgtcacc gcttcgccag       720
     catcccagaa gcacctacga ctccacgggc gctcccgcga acacccggga agcatattcc       780
     ccgggctctc ctagaaagaa gcgagccgta ttcagggagc tcttcggcag cgacagcgag       840
     taggagccac ctagtttcct ccgggcacct tcgggtgccg cctaatcctt ccacatccta       900
     tacggaccct cttccgaggc taagattgct gaggaagtca camccacckg gaagctactc       960
     cgagcgacgc ctactcccac caagtccagt actmaccagc ttccggctac ctcaagagat      1020
     ctaatacaca cttacgcaat aacaagtgta caaccaaaga ttaaatatat ccgacacgtt      1080
     ttattgtttg taaaaggggg ccttctgatt gaaccaaacc taaccacgtc ccccaca         1137
//
ID   Gypsy-28_MSe-I repbase;    DNA;    INV; 5187 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 905-905 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5187 BP; 1445 A; 1050 C; 1184 G; 1507 T; 1 other;
     tcttggcgtc ccaacgtgtg tttttgtatg aaacaagggg ttggagtcta ttttttagtg        60
     cagatcaaac ttttgcgcgt cagttcgtca gtgtacctac ctagttcaca aaaacttttg       120
     aacttagtgt cgcgaccgac aattgtgcat tatagaagtt tataaaactg ctttgccgtt       180
     gttttgtgat tttcgcccaa aatgccgcga agacgcaagt cgctcagtac cgacgactcg       240
     gttcaggaag aatcggaaaa atcagttacg atgtctcaag aagctttaac tacactattg       300
     actacgctac aacagtcgca agcagagttt tgcagtcaaa ttttacgtga agttcgctct       360
     tcgacaccgc aaactatatc aattgatcca aattctacgt catgtacttc caccattacg       420
     aaaaataatt tctcaaagtg cgcatcgaga ttcggtggta gtccggaaga atccgttgat       480
     aattttattg atgccataca agtttacaaa acatgtttga atatatgcga cgagaacgca       540
     ttgttaggta tgtcgatgtt actccattca tcggcaggaa catggtggca aggcgtaaaa       600
     ggtactacca gaacatggga ggatgccatt acgaagctac gaagtgcgta tggtgaacgc       660
     cggccgcctt ttcgaatata tgtcgagctg ttttccttag ttcaagataa agaaaacact       720
     gatcgtttta tttcaaaagt tcgtgccttg ttagcaaaac tgccccaagg tgacctgtcc       780
     gaacgtgtcg aattggatat gacatttgga ttgttggacc gccgtattcg taaacgtatt       840
     gatagagaat caatttccac gtttgacgaa ttgcttaaaa aagcgagagc catcgaagac       900
     tcgcttagtg aagtacggca tgatggttcc aaagtgtcga catcgtccag ttgcgaagaa       960
     cgtgccgccg cgcccgtgga accagcgcgt gccgccgccc gcgcggaacc agcgcgcgcc      1020
     gccgccgtcg agtcttcgcg tgccgccgcc gctccgtcga gttttacaaa agttaaagac      1080
     tttacgacaa gagcgggaaa accaaagttt tgtgtttact gtaaacgtac cggtcacagt      1140
     aaggacacat gtgaaaaatt aaaaaataat gcmaaaagtg aggacaccaa aaacgttaaa      1200
     tgttatggtt gtggtgccgc gaatgtaatt cgttcaaagt gtacaaaatg taacaacgcg      1260
     gttaatagtg aacattcagc gttttgttcg gtattatgtg agtcccaggt gcctcaatgc      1320
     attgagtcgc ttcacgcgcg ttctgtgcgt agcgataggc gctgcgcgac cggctcgccg      1380
     ctgctgcccc agccgctgtc gtcgccgctg ccgtcccggc cgcgtcgtcg ccgctgccgt      1440
     cccggccgcc gttgtcgtcg ccgccgccac aaataagtac cccgtcaccg catagtgtaa      1500
     gttttgccga cgattcttgt tatattaata ataatatttt acaaaattgt gtctcgcaaa      1560
     ctgatatgtg taattgtcgt agtaatttta aaacacgtag atataggaat atgaaaatgt      1620
     gtaattgtgt taaatgtact acttgtgacg agggggagtt tgcgttgccg ccacaaatta      1680
     ataataatat gtcacagtca gtattgagtt ttcaatcttt tagtgataat tctgatactt      1740
     cagaaatcaa aagtggttgt caacattttt ctgaaattgc aaatggttct caacattttt      1800
     ctaaaactaa aagttgttct caattttttt ccgaaaatag tgtttctcaa ttaacgtacg      1860
     gaattgctag taattgtcaa tcttttaatg agaatagaca ttttttacgg cctgtactaa      1920
     aaattagtat tttgggtaaa aatggtatag ctttagtaga ttcggctgcg aaaagctgtg      1980
     tggctggtca tacgctgtac actcttttga aggatcatca tcacccaatg tcgtcgtgta      2040
     tggaaaatat aaaattggca gatggcatta gtagaccaat gacggttctt aaaaccaaag      2100
     ttaatgtaac tcttgaaggc agaaccaggc tagtaagttt tttaattttt ccagacgcgg      2160
     ataaaaatga gactctttta ggtatagatt ttctgataac ttttaatatt agtgttgatt      2220
     ttggtaactc taaatggcac tttgctgata acgtaaatga gcactttgat cttctatctg      2280
     aaaaagcatc acagtcacac caaataaata ctttgcctgt tagtagtatt cttagaggtg      2340
     aggaagcgtc acagcttagc gacgagcagc gcaaggtact ttctcagttc ttagttaata      2400
     ataaggatgt ctttgagtta aaaggcgaac caactacttt cgctgaacac acaatagaca      2460
     ccggtgaaca tagtcctata gcggttcctc cttatcgatt aactcctgcg aaaaaagctg      2520
     ttatgcaatc tgaaatagaa aagatgttag ctgatgacat aatagaagag tgcgaatctg      2580
     catggggctc tcctgcgtta ttagtgccta agaaatccgg tcaagttcgt ttctgcgttg      2640
     attatcgaaa acttaacgcg attacgaaaa ccgatgtgta cccgatgccg cttatagatg      2700
     agttaataca atctaccaag cgcaattgca tcatgagtac gttagatatg cgaagtggat      2760
     tttggaatgt ttctgttcgt gagtgtgata gagacaaaac tgcatttttg acaccttttg      2820
     gaacgtatcg tttcaaaaga atgccgtttg gattaaaaaa cgctccatcc acattccaac      2880
     ggttgataga taggttgcgt tctgccgcgt cacttaaaaa tgtgacttta ttagcctatc      2940
     aagacgattt gctcgtcatt tcagaaagct ttgatcaaca tattgctgat ttacaaatgg      3000
     ttttcgagag gttgcgctta tttaatcttc gtgccaatcg cgaaaagtgt gttttcgcgc      3060
     gcgaagaagt aaaatatttg ggacatgtca tcactcagga tgggatttca cctgatcatg      3120
     ataaagtccg cgctgtagcg gatatgaaag caccgaattc gctacgtcac ctcaaaacat      3180
     ttcttcagac ctgttcgtgg ttcagaaagt ttattttgaa tttttcaaaa gttgctgaac      3240
     cgttaacacg tctcttaaag aagaatcaac catgggtatg gggctctgag caaaatcagt      3300
     cgttccagga gctcaaaagg cttttaacgt ctgcacccat tcttgcccag gctgattaca      3360
     gcaagccatt tgtcttgcgt actgacgcca gtaattacgc tctcggcgca gtgttgctgc      3420
     agggagatgg gaaagacgaa cgcccgatag cgtacgcaag ccgtctttta aacccagctg      3480
     agcgtaatta tagtactacc gaaagggaag cacttgcggt agtgtggtca gtcgatcgtt      3540
     tcagaggata tatcgaaggt cagcaaattg ttataggcag tgatcatcag cctcttaagt      3600
     ggttgttgag tttgaagtca ccatcaggta gattagttcg gtgggctttg aagttacagg      3660
     agtttaacat tcagttcgaa tacactcctg gcagggccaa tgttgtcgcc gacacgttga      3720
     gtcgtcctac ctgtgaagaa aatagtaaag gtcagtgtgg tatatgtacg gttgtcgttg      3780
     acttacctac gcgaagtcct gctgatctgc ggtctgctca gttagatgat ccggagctga      3840
     aaaaaataat tattaatggt cttgaaagta atgatgcagt ggaagataaa cgctggtctg      3900
     agcgaggtta ttttatgcag caaggtgttc tttatagata caatcctgat gtcgatgttg      3960
     aagaacccca actcgttctt ccaataagtt tgcgactcga tgtcttgaag gaatgtcatg      4020
     atactccact tgctggacat caaggtattg ataggacctt tcagaagctt tcgcagcgat      4080
     ttttcttccc tggcatgaga cgttacgttg ccgactttgt caagtcgtgt gcaacttgcc      4140
     agcggtacaa accatcaaat ttaaaaccct caggtctttt acagaccccg gtcttaaatc      4200
     aaaggggaga ggttttggcg attgatttgt ttggcccgct ccctcctgga gagaagggga      4260
     gaaatacatt ttgttaatag aggacacagc tactcggtgg gtcgagcttt ttgctctcgc      4320
     tgacgccact tcagaagctt gtgctcgaac tctaattgag gagtatttcc ttagatacgg      4380
     tcttccacgt cgcattgtct cagacaatgg cgtacagttc gtatctgccg ttatgcaaca      4440
     gtgcatgtat attctgggga ttaaacagga tttattaccg ttgtatcatc cagaagcaaa      4500
     cccggccgaa cggaaaaata gagatctaaa ggcacagctg gcccagttgg tagacactga      4560
     gcattcttcg tggcctaacc atttaccatc ggttcgtttt gctatgaatt cggctatgtg      4620
     tcagacaaca ggcgtttcac cagcttttct tacattagct agagaacttc gttcacctgt      4680
     tgacgttcat ttcgatataa gagctgtttt aaaaaaggat aatttcgtgc ctcagatcac      4740
     gccctactta aagaggttct tggattcttt aatttcagtt agggatagag tagaaaaaga      4800
     acaggatagg cgtaaggatt atgctgataa aggtcgtaaa cctgaagaat ttaatgtcgg      4860
     agatcaagtt ttagttaagt cgcatgtatt aagtaatgct gcaaaagggt tatcgtctaa      4920
     atttgtacct aaaagagacg gtccttatat ggttattagg aaaactagcc ctacaactta      4980
     cctggtgtca aaacttaatg ctcctgatga tgttttaggc aggtttcacg catcccaact      5040
     tacgccattt gtgaatagag atgacgcgcc acctccaccg attatgccaa agcgtcgtag      5100
     aggccggcct cgtcatgtaa agcctgtttc tgatgttctt gagcgtgttc ctgagcgagg      5160
     acgcattcac gaacccgagg gggagtg                                          5187
//
ID   Gypsy-28_MSe-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-274
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 954-954 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 274 BP; 71 A; 68 C; 70 G; 65 T; 0 other;
     tatagcggtg actagtagca gactccccgt ccgtataggt cgcggtacgt tgcctgcacg        60
     atacacctcg taacggtgag tatccgaaac aaggtgtatc caggcgccgc acgtgacatc       120
     ttcccgacca atggggtgag cctgcgcgcc acagagagag tcacgtagtc catggcgcgc       180
     gagtgtactt atgtaaaagt gttaattgtt aagtgcatta aagtttacgc tgtaataaat       240
     agactcttat tgaagctgac ccaccccgac tata                                   274
//
ID   Gypsy-28_OrIn-I repbase;    DNA;    INV; 5761 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5761
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1569-1569 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           281..2092
FT                 /product="Gypsy-28_OrIn-I_1p"
FT                 /translation="MSTLPCLACENVFPSEDFVDCTQCKRKVHFACSHITK
FT                 TNYSKLKTELKAIFTGICCNPNLAQKITKKQMSEFASHLESKVVEIQKQTH
FT                 TQLDNFKTEMEKQNELYQKRIEEKVKKCQEDIASLTHKYKSEIGTLRGDLN
FT                 SLKSLETVDSQTPKKQSKRKEGGPLAPKENKIPPSTPKNDLAAKLSALGLE
FT                 EKDISEISSWVADTYVPVKSLSTPDIPIKSSTNTDFPFQSTAIDFRQTSIP
FT                 VIEDTDLSSSDSDSDSNSSKSSSKKGRRRYISKQLKRTISNLPKFYFYNPI
FT                 SIFRFLLKLAPIAARLKRHFKKILGIIADNTRHAMYADFLYNAMSHANIDF
FT                 DLFAHSLINFGMTPRQFWISKSRFLFSPQDPDLHLRQYIDSQITLARFFGE
FT                 TNEADNAKNIVKSLHASYFMLIGSPENIKSYADLYAKTKEIEITLNERYGT
FT                 TKPNFGNAFPGTSFDHQFPHYTAYHYQYKNNRYSGYNSYNHKSHDFQGGFD
FT                 KIKNSGNNVSNHQHPNRDNSKKPYQKNYRYHSERPKEFFDSFTYGRNESKP
FT                 FKQKSHYQNKKNVQFKQSKNQTAVAVEEVKNIPSTSSQSNQTQKNKTNAKE
FT                 TNNSKN"
FT   CDS           2083..5307
FT                 /product="Gypsy-28_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FKKLITSPSHVLAATTTTLFHSLPFVDVTIGKKKVAA
FT                 LLDTGSTINAMSRQFFNGLNKHEITEVVHNPKKSVVSVAAESLHFTEKGKV
FT                 KIKIFNLSWIIEVFVLEKMPVPFLLGFHFQSTAGVIIDATSRTFSFAHNPL
FT                 KTYEFVTINEGNEDLINMLSNYITPISKENSGYLFCLHPRVVPNFKDLNTF
FT                 PFKQHFVELFPKVLNDNLGQAKDYKLKIYIKDVPPINQPAYPLNPNDLEKM
FT                 REITDDLLKQGVIKPAFSPWASPAFLVAKKDAKEKRLVINYKKINELIIFS
FT                 AWPLPLLDAIFLHLRDAKFFSILDLSQAFHQLPLDENSRKITAFKTPFGHF
FT                 EFCRVPMGLSLGSQALTEYLEKIFHHVKYKFVWNYLDDILIFSKNEQDHYN
FT                 HIRETLKILQNNGLTVNPDKIKFFQTSIKYLGHQIEHNSIKIDNDRISYVK
FT                 NLLPPTTLKQTLSFLGFCSFFARFIPNYSAIAAPLHALTKKTTSLVWTHEC
FT                 QNSFETLKKLLTSPPTLAIPDFNRTFLLYTDSSGVAIGSLLAQQDNNGAVC
FT                 PIAFYAKKLKASELNYTTYKKELFAVVLSFRHFRQFLVHKPFILYTDCSGL
FT                 ASFLKGDRSRILSNPAIRWISELDSFSFEVKHVKGAANTVADYLSRFSEPE
FT                 AALFDESTSQTTDSILFISPLKNLPSLFEDFGRQQAADPSIQSLLSSKDPN
FT                 IKVIKNLIYFVPLKHPQSKKLLVPEALKSPLFQYYHINSYGAHLGTFKTLE
FT                 RIRSLFTYKGIHNDIRSRVAACEICAKIKPNNNPFPPVLHSTPPTRVMEKL
FT                 YIDFIGPLPVSTKGNKFVLVAVDAFSKFLFAVPCRATTTTTVIRILQNHVF
FT                 AQHGLPTYIISDRQSCFRSSAFKNFLFDLGVTYIANITHFPQANLAERYIS
FT                 GIKKSIRAFHSDSQKKWEDNLFLFVSALNSAQHETTKHSAALIFLGREIQH
FT                 PLTLRFNLEENLTHLKHSQLVELFQNVHTNLLNSSKTRNNYYSKGNKDKKL
FT                 PGIGDIVYRKHFILSSKPKNIQASLAHKFTGPYKVLKIFNKVSYLLEDLND
FT                 PSIKVHAHLSQLKPASKN"
XX
SQ   Sequence 5761 BP; 1869 A; 1217 C; 876 G; 1799 T; 0 other;
     aatatatggt agcagaaact gcgagtcttt tcacgaaaat ttttatcttt ttcggacctt        60
     gaccgagtct ttaagaaaaa agcctgtcgg gctattttta atctaatttt gtccatttta       120
     tttacctaag acataattat ctacgtctta tctttgtcta aaccttcttt aaagtaaaat       180
     tttttttata atttataatt ttataaattc ccttcattca aaagggctat ctttcacgtt       240
     aaaactttta gcttgccaat tttttttttt tctataaaaa atgtctacct tgccttgtct       300
     tgcttgtgaa aatgtttttc ctagtgaaga ctttgtagat tgcacgcagt gtaaaaggaa       360
     agttcatttt gcatgctcac acataacaaa aacaaattat tctaaactga aaacagagtt       420
     gaaagcgatt tttacaggaa tttgctgcaa ccctaatcta gcacaaaaaa tcacaaaaaa       480
     gcaaatgtct gaatttgcct cacatctaga atcgaaagtg gtggaaatac aaaaacaaac       540
     tcatactcaa ttagacaatt ttaaaaccga gatggagaag caaaatgaat tataccaaaa       600
     acgtatagaa gaaaaggtaa aaaaatgtca ggaggatatt gcgtctttaa cccacaaata       660
     caaaagcgaa ataggcactc tcaggggaga tttaaattct ttaaaatctc tggaaaccgt       720
     tgattcccaa acacccaaaa aacaatcgaa aaggaaggag ggagggccac tcgcccctaa       780
     ggaaaacaaa attccccctt ctaccccaaa aaatgattta gcggccaaac tttcggctct       840
     gggattagag gaaaaagaca tttccgagat ttcctcatgg gtggctgaca cttacgtccc       900
     cgtcaagtcc ttaagtaccc cggatatacc aattaaatcc tcaactaaca cggattttcc       960
     ttttcaatcg acggcgattg atttccgtca aacatcgatt cccgtaatcg aggatactga      1020
     cctttcatca tccgactcgg attctgacag caactcctcg aaatcatcct ccaaaaaagg      1080
     aaggagacgc tacatttcga agcaattaaa acgaacaatt tcgaaccttc caaaatttta      1140
     tttttataat cctatttcta tttttagatt cttgctcaaa cttgccccga tagctgcgcg      1200
     attgaaacga catttcaaaa aaattcttgg cataattgca gataatacta gacatgcaat      1260
     gtatgcagac ttcctttata acgccatgtc acatgccaac attgattttg atttgtttgc      1320
     ccactcactt ataaacttcg gcatgacccc tcgacaattt tggatttcaa aatccaggtt      1380
     tttattttcg ccccaagacc cggatctgca tctccgtcaa tacatagatt cacagatcac      1440
     tttagcgcgt ttttttggtg aaacaaacga agctgataat gcaaaaaata ttgtaaagtc      1500
     cttgcatgct tcgtacttca tgctaattgg gtctcctgaa aatattaagt catacgcgga      1560
     tctatatgct aaaactaaag aaattgaaat cactttaaat gaacggtacg gtaccacaaa      1620
     gcctaatttt gggaatgctt tccctggtac ttctttcgac catcagttcc ctcattacac      1680
     agcttatcat taccaatata aaaataatag atactcaggt tataattctt ataatcataa      1740
     atctcatgat tttcagggcg gctttgacaa aataaaaaat tcagggaaca acgtgtctaa      1800
     ccatcaacat cccaatcggg acaattctaa aaaaccatat caaaaaaatt atcgctatca      1860
     ttcagagaga ccgaaagaat tttttgattc attcacgtat gggcgtaatg agtcaaaacc      1920
     gttcaaacaa aagagccatt accagaacaa aaaaaatgta caattcaagc aatcaaaaaa      1980
     tcagactgct gtagcggttg aggaagtcaa aaatatccct tccacctctt cccaaagcaa      2040
     tcaaacccaa aaaaataaga ccaatgcgaa agaaactaat aattcaaaaa actaattacc      2100
     tccccttccc atgttcttgc ggcaactacg actaccttat ttcattcttt gccttttgta      2160
     gacgtcacaa tcggtaagaa gaaggtggcc gctctattag atacgggcag caccataaat      2220
     gcaatgtcta gacaattttt taacggtcta aacaagcacg aaatcactga ggttgttcat      2280
     aatcccaaaa aatctgtcgt atctgtcgcc gcagaatcat tacattttac ggagaagggg      2340
     aaggtcaaaa taaaaatttt taatttatca tggattatag aagtatttgt gttggaaaaa      2400
     atgcctgttc cttttctttt gggtttccat tttcaatcaa cggcgggtgt cataatagac      2460
     gccacgtcac gaactttttc ttttgctcat aatcctttaa aaacctatga gtttgttaca      2520
     ataaatgagg gcaatgagga tctcattaac atgttaagca attatatcac cccaataagc      2580
     aaagagaatt cagggtattt attttgcctt catccacggg tggttcctaa tttcaaagat      2640
     ttgaacacct ttccatttaa gcagcacttt gtggaattgt tcccaaaggt gttgaacgac      2700
     aatttgggtc aggcaaaaga ttacaaattg aaaatataca tcaaagatgt ccctccaatt      2760
     aatcagcctg cttatccgtt aaatcccaat gatttggaaa aaatgcgtga gatcacggat      2820
     gatcttttaa aacaaggtgt cataaaacca gccttttctc catgggcatc gccagctttc      2880
     ctggtagcca aaaaagatgc taaggaaaaa cgactcgtca tcaattataa aaaaattaac      2940
     gagttaatta tcttttctgc atggcctctc ccattactgg acgcaatttt tttacatttg      3000
     cgagatgcca aatttttctc gatcttagat ctctcacaag cctttcatca actaccattg      3060
     gatgaaaact ctcgcaaaat aacagccttt aaaacgcctt ttgggcactt tgaattttgc      3120
     agggtaccga tggggttgag tttaggttcc caagctttga cggaatactt ggaaaaaatt      3180
     ttccatcatg taaaatacaa attcgtatgg aattatttag acgatatcct catattttcc      3240
     aaaaatgagc aagatcacta caatcacatt cgtgaaacct tgaaaattct acaaaacaat      3300
     ggtctcacgg taaatcccga taagatcaaa ttttttcaaa cttcaataaa atatttggga      3360
     catcaaattg aacacaattc cattaaaatc gataatgatc gaatttcata cgtaaaaaat      3420
     ttacttccgc ctaccacttt aaagcaaacc ctgtcctttc ttggcttttg ttcatttttt      3480
     gccaggttta ttcctaatta ttccgccata gctgctcctc tgcatgcgct cacaaaaaaa      3540
     accacgagct tggtttggac ccatgagtgc caaaattcgt ttgaaacttt aaaaaagcta      3600
     ttaacctcac cgccaactct ggccattcca gactttaacc gaacatttct tttatacact      3660
     gattcttcag gcgttgctat cggtagtctg ttagcacagc aagataataa tggagcagtt      3720
     tgtccaatcg cattttatgc aaaaaaactt aaggcctcag agttaaacta tactacctat      3780
     aaaaaggaac tctttgcagt tgtattaagc tttagacatt ttagacaatt tttagttcat      3840
     aagccattta ttctatacac cgattgcagc ggtttagctt cttttttaaa aggggatcgt      3900
     tcacgtatcc taagcaaccc tgccataagg tggatatcgg agttagactc atttagtttt      3960
     gaggttaaac acgtcaaagg cgctgcaaat accgtagcgg actatctatc ccgcttttca      4020
     gaaccagaag ctgcactttt tgatgaaagc acttctcaaa caacagattc aattcttttt      4080
     atttcgccgt taaaaaattt gccttcctta ttcgaggact ttggcagaca acaagctgcc      4140
     gacccaagta tacaaagtct tctttcctct aaagacccca atatcaaggt cataaaaaat      4200
     ctcatctact ttgtccctct caaacatcca cagagcaaaa agttgttggt acctgaagct      4260
     ttaaaatcac ctctttttca gtactaccat attaattcat atggagctca cttagggact      4320
     ttcaaaactt tggagcgtat ccgctcactt ttcacatata agggcattca caatgacatc      4380
     cgttcacgtg tcgcagcttg tgaaatttgt gcaaaaatta agcccaataa taaccctttt      4440
     cctcccgttc tccatagtac cccgccaaca agggtaatgg aaaaactcta tatagatttc      4500
     attggccctt taccggtttc tactaagggt aataagttcg ttcttgtggc tgtcgacgcc      4560
     ttcagcaagt ttctttttgc ggtaccatgt cgcgctacca cgacgaccac tgtcatccgc      4620
     atcctacaaa atcatgtatt tgcgcagcat ggcttgccga catacataat aagtgaccgg      4680
     caatcttgct ttcgatctag tgctttcaaa aatttccttt ttgacttagg cgtaacttac      4740
     atagcaaaca tcacccattt tcctcaagcc aacttggctg aacgctacat ttcggggatc      4800
     aagaaatcca ttcgtgcgtt ccatagtgac tcacaaaaaa aatgggaaga caatcttttt      4860
     ctctttgtat cagccctaaa ttcagcacaa cacgaaacga ctaagcactc agcagcgttg      4920
     atatttctag gaagggaaat acagcatcct ctaactttaa ggttcaattt ggaggaaaat      4980
     ctcacacact taaaacactc ccaattagta gagctatttc aaaatgttca tactaacctt      5040
     cttaattctt cgaaaacccg taataattat tactcaaagg gaaataaaga caaaaaatta      5100
     cctggcattg gcgacatagt ttatagaaaa cattttattt tatcctcaaa gccaaaaaat      5160
     atacaggcat ctttagctca taaattcacc ggtccgtata aagttttgaa gatttttaac      5220
     aaggtttctt atctcttaga agatcttaat gacccgtcaa taaaagtgca tgcacacttg      5280
     tcacaactta agcctgcatc aaaaaactaa gtcaatttta acaattttaa cttcattcaa      5340
     ttttttttta aattttgcat ttcacttaag atctccttta aataaatcac ttaaatggct      5400
     tcgcttagat ttggcatata tatatatatt ttttcttctc aaattttaat ttcctttttg      5460
     ccttttactt attactttat tacctttttc attttcacca gttttatagg agattatata      5520
     catgtaataa attgaaattg taagaccaga cctttttcct ttatataatt aaaaatgggc      5580
     ttcattcgat tgcaattaat tttattatta ttgtataact tcattatgac taatgaccaa      5640
     attgggcttc ttcgtttcat catccttctt caatggacca cgacttcatc accatctcca      5700
     tcgcctgcgc tgtacttcat gaattttttt tccctttttt tttttaaccc tggggagtat      5760
     t                                                                      5761
//
ID   Gypsy-28_OrIn-LTR repbase;    DNA;    INV; 615 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-615
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1535-1535 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 615 BP; 155 A; 131 C; 103 G; 226 T; 0 other;
     tatgacgaca cgattcgtaa tgaagcggga aaccatggag agtggggaga ggtttgagga        60
     accggcgaga gaggcggagc gagcggcgtc ttttttttcg ctcgcgcgaa atttccttct       120
     tcttccttca gcattggaac gacgtacaac tcgaagactt ttaccttctt cttcgacggg       180
     atccggtagc gcgagcagct caagcgtctt ttctcttcaa gagttttttt tttaccaaca       240
     tctatttttt tttcgctcac gtaaaaaaaa aaaaaaatta ttcttcatcg tcatctttaa       300
     acatctttaa acatctttaa acatctttaa acatctttaa acgaggtcag agacttttca       360
     gtgtcgtctt cagtgttcct ctttatgttc tgttttttcg agtttttcaa ctccttgaac       420
     atttgcaaca tttccccagt gccgcgaggt caaagacagt tttttacttt tcctcattta       480
     tgtacctttt tttaatgcaa gatttccttg taaactcttg agaatttttt ttttatttca       540
     atattatcgc cctatctaaa aagaagcttt tttttatttc tattaatcct ccatggtctc       600
     agcataccca tcata                                                        615
//
ID   Gypsy-28_SI-I repbase;    DNA;    INV; 4020 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_SI_;
KW   Gypsy-28_SI-LTR; Gypsy-28_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4020
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 446-446 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2734-3246] - Integrase core
CC   'GTGA' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..2634
FT                 /product="Gypsy-28_SI-I_1p"
FT                 /translation="MFADFRAYRASGKARDSCFAQPFTNSAGFSSRKLFKI
FT                 QFREPIRQLLVPSTFWQQSQQVHEAVRLETSPTGKLEAELPQAAGSLAVAA
FT                 RRLIVRDRVTGIKFLIDTGADVSTLPVSRRDRSNQSDHVLYAANGTIIPTF
FT                 GQKLLKLDLGFRRTFQWPFVIADVDTCIIGSDFLAHFNLLPDIRHKRLIDG
FT                 NTLIKVSAQLVKQATPRITTLAENCPFKEILSEFPEVTRTSIIHKETAHGV
FT                 EHVIETTGPPVSAKARRLCPEKLKAAKQEFEYMIQQGLCRPSKSPWASPLH
FT                 LVRKKNSDWRPCGDYRKLNEVTLPDRYSIPFLQDSTHFLHDKTIFSTLDLV
FT                 RAFQQIPVRESDIPKTAIITPFGLFEFPFMTFGLRNAAQSFQRFMDRVTAG
FT                 LDFCFTYIDDILIASQDEVQHKEHLRILLGRLQQYGIAINPNKCVFGQKSV
FT                 SFLGHTISTEGIRPLPEKVQAITDFQEPATVKGLRRFLGMLNFYNRFLKDV
FT                 ATMQAPLLKEISGRKRCNNAKIVWTPELRQAFQEVKKHLAQATSLAFPDSK
FT                 ATLSLQTDASDTAIGAVLQQRSNGILQPLSFFSRKLTPTQTRYSAYDRELL
FT                 AIYSAIKHFRFMLEGQNFYIVTDHKPLVFAFKRKSDQMSPRQTRQLLFISE
FT                 FTTDIRHIAGAENIVADALSRVDTIVMPTSLDMQEIAEAQSSDEELQQLKQ
FT                 SAATSLKLKKFTLSETASTIFCDTSEDDIRPYIPASLRRRVFDMVHQMSHP
FT                 SGRATHRQISQKF"
XX
SQ   Sequence 4020 BP; 1084 A; 1048 C; 897 G; 989 T; 2 other;
     gtgattggct cccacgacaa cgtcgtagcc acagtaagtt tcgcggacag cgccgaaaag        60
     aaactgcgta gactattaaa cgagatcgat ctaggtgacc gccgcccgtc gcaattactt       120
     agacgaatgc gagaccttgc acaatccggt gtatccgaag aagtgcttaa atccttgtgg       180
     ctacaacgac taccgcagca ggtgcaagcc attattgaca gctaccaagt acgaccttga       240
     agaattatcg cagctagcgg atagagtaac agatgtgtta cccgccggca ttaacgtggt       300
     cacggcagca acatccaagc agactcttcc aacggatccg caatgttcgc agatttccgc       360
     gcttatagag cgagtggaaa agctagagac tcgtgcttcg cgcagccgtt cacgaactcc       420
     gcagggttct cgtcgcggaa gttattcaag atccagttca gggagccaat ccgacagctg       480
     ctggtaccat cgacgttttg gcagcaaagc caacaggtgc acgaagccgt gcggttggaa       540
     accagcccca caggaaaact agaagccgaa ctgcctcagg cggcaggtag tttggccgtg       600
     gcagctcgcc gtctcatagt cagagaccgt gtcaccggca ttaaattttt gatagacacc       660
     ggggcggacg tctcgactct ccccgtctca agacgcgacc ggtcgaatca gagcgatcat       720
     gtactctacg cggctaatgg aacaattatc cctacgtttg gacagaagtt actcaaactc       780
     gacttgggat tccgtcggac ctttcaatgg ccttttgtga ttgccgacgt ggacacctgt       840
     atcattggct cggatttcct ggcacatttt aatttattgc ccgacattcg acacaagcgg       900
     ttaatcgacg gcaatacgct catcaaagtc tccgctcagc tggtcaaaca agccacgcct       960
     cgcataacaa cgttggccga aaattgccca tttaaagaga ttctaagtga gtttccagaa      1020
     gtaacgagga cgtcgatcat tcataaggaa actgcgcacg gagtggaaca tgttatcgag      1080
     acaacgggtc cccctgtgtc agccaaagct agacgactgt gcccggagaa gcttaaggca      1140
     gccaaacagg aatttgaata catgattcaa caaggcttat gtagaccctc caaaagtcct      1200
     tgggctagtc ccctacatct agtacgaaag aaaaacagcg actggcgccc gtgcggggac      1260
     taccgcaaac tcaacgaggt aaccttgcca gatcgttact caattccttt tttgcaagac      1320
     agcacgcatt tcctgcatga caagactata ttctccaccc tagacttggt gcgcgcattc      1380
     caacaaatac cagtccgcga atcggatatt ccaaagaccg caattattac gccgtttgga      1440
     ctgtttgaat ttccgtttat gacttttggg ctgcgtaacg cggcgcagtc ctttcaaaga      1500
     ttcatggatc gggtaaccgc gggacttgac ttctgcttta cgtatattga tgatatcttg      1560
     atcgcttcac aggatgaagt acagcacaaa gagcacctga gaatactcct cggcagactc      1620
     caacagtacg gaatcgcaat caaccccaat aaatgtgtgt ttggtcaaaa aagtgtcagc      1680
     ttcctgggac acacaatcag cacggaaggc atcagacccc ttcctgaaaa ggtccaagcc      1740
     atcaccgatt tccaagaacc agcaacggtt aaaggacttc gacgcttctt gggcatgctc      1800
     aacttttaca accgatttct caaagacgtt gcaaccatgc aggcgccatt gctcaaggaa      1860
     atctccggac gtaaacgttg caataacgca aaaatagtgt ggaccccgga gctcagacaa      1920
     gcttttcagg aagttaaaaa acaccttgct caagccacct cacttgcatt ccctgatagc      1980
     aaggcaacac tctcgttgca gacggacgcc tcagatacag cgatcggtgc agtattgcaa      2040
     cagcgcagca acggaatttt acagccactt agtttcttct cgaggaaact cacacccacg      2100
     caaactaggt atagtgcgta tgatagagag ctgttggcta tctactcggc tatcaagcac      2160
     tttcgtttca tgcttgaagg acaaaatttt tacatcgtaa cagaccacaa gcccctcgtg      2220
     ttcgcattta agaggaaatc cgatcaaatg tctcccaggc aaactcgcca gctgcttttc      2280
     atctcagagt tcacgactga cattcgccac atcgcaggcg ccgagaacat cgtagcagat      2340
     gctttatctc gcgtcgacac catcgtgatg ccaaccagcc ttgacatgca ggaaattgca      2400
     gaagctcaat cttcagacga agaactgcaa cagttgaagc aatccgcagc aacgtcactg      2460
     aagctaaaaa agtttaccct atcggagaca gcatccacca tcttctgtga cacctcggaa      2520
     gacgacatca ggccgtacat ccctgcatca ttgcgcagac gagtgttcga catggtgcat      2580
     cagatgtcgc atccaagcgg cagagcaacg catcgacaaa tttcgcaaaa atttktgtgg      2640
     ccatctatgg cgaaagatat taaagagtgg gcccgtacat gtttagcgtg ccagcaatcg      2700
     aaaatccatc ggtacaacca cgtttcgccc actaaaatcc cagtgcctga ctcacgtttt      2760
     gaacatgtgc atattgatat tgtcggcccc ctgcctccat ctaaaggttt cagatatctg      2820
     ttaacgatgg tcgatcgatt tactcgttgg cccgaagcca ttcctttgca ggactgcact      2880
     gcagatacgg tggcaaagaa ccttttcact cactgggtag ccaggttcgg ttccccacgc      2940
     ctgatcacaa ctgatcaagg ctcacaattc gaggcacaat tgttcgatgc tctagtccaa      3000
     cttgtcggtt cgaagcgctg ccgaacaact gcgtatcacc cggagtccaa cgggatcatc      3060
     gagcgatggc atcgctccct caagtccgca ttgatgtgcc atggcgaagc tcaatggatc      3120
     gacacactac cagtggtttt gcttggtttg agaacctgct tcaaggaaga tttaggcacc      3180
     tccgtagcgg aattagtcta cggcaccacg ctcaaggtcc caggtgaatt tttctcctcc      3240
     gaggaaatgc cgagtaaccc acggattttc gttgaggatt tccgcgtaat tatgcaaaag      3300
     ctgcgaccta gaccgacctc gcatcatatt aaacctaaaa tgtttttcca caaagactta      3360
     tgtaattgtt cccatgtttt tctcaaagta gaaggtagca gacgtccctt agatcagccg      3420
     tacaccggcc cacatagggt tttagagcgc atctcggata aagtctttgt tttggatatk      3480
     aacggtaaac gcgttaatgt tactgtcgat aggcttaagc ctgcctactt agcaatccaa      3540
     gacccggata cctctcagtc aactacattt ccggcgtcag ctggtgcacc gagccagcaa      3600
     gaaccaagga catattccgg tccagcgacc aagccaaaga ccgtcagatt taaagaataa      3660
     ttcgcgcatt aagaaaaact ctaatgtaca acttagcgtt aagcattcaa aaagcaataa      3720
     tttttttttt ttttattttg tttattatac catattgtat ttactattat ccttgttctt      3780
     ccattccagt attaactagt ttattttctt acgtttacac tggggggggg gagtactgtg      3840
     gcgttacgag cgctagcggc ggcgctggtt tgttccgttt ttctctctcg ctctctctct      3900
     ctctctctcc gtgcatggcg tacctgatgc gaacgttcgc aagcgatagc gtaatatttc      3960
     ctaagtttta tttggtaaga ttaatctatt tcctaatcaa tcctccggga tcatttgtga      4020
//
ID   Gypsy-28_SI-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   22-MAR-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_SI_;
KW   Gypsy-28_SI-I; Gypsy-28_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-249
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 447-447 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 249 BP; 74 A; 61 C; 44 G; 70 T; 0 other;
     tgttagctca gacagccgta cccatgatag cgtagactct actactcttg tacagtagga        60
     ctataagttc ccgagagcta acctcgaacc atagccgtta aggctcaagc tgtaagcacg       120
     cgatcacgtc cacgtactcg tggatgtaat tgttttgata attcaataaa acaaaactaa       180
     ttctattaga agcctagctg ctttaacatt cattataact ctccattttc cgccagtcgg       240
     aatacgtca                                                               249
//
ID   Gypsy-28_SiCu-I repbase;    DNA;    INV; 4104 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4104
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5051-5051 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4091
FT                 /product="Gypsy-28_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSVGNLSVFNPSVDDITVWLQAFDSYLLANDLDPYT
FT                 VPTGGKLDPGTVSKCRAIFLSSIGLSTLSTLTSLLSPAKPESKTLEELKKT
FT                 LTDHFKPTPKALLERYKFTGRKQKHGETVAQFVAELKKTAQYCKFEASTTM
FT                 TELEVRIRDQLLFGLSNEKAQNQLFQKDDNLSLADAIKIAEAQESADASTT
FT                 MVREGHTTAGGGSDVHKTSTSNKKKNKHFEKNKSSQEGKDKDECGRCGSKK
FT                 HNSSTCPHKSVECYECGKKGHFANKCRTDASKKKEKNTKKFSTNTVAAIHS
FT                 HQAADEDKVKISTKIDGVAHEWEWDSGCQRSVLSVDFWRNQLGSRALEKST
FT                 VKFRTYQNEEFSPLGLLDCSIQYKGQTTKYKIPVVDGSSLFGRDLIRLFKL
FT                 DWKEIIAQLNQVQADEEASCSSLEALLKEYDDIFTVPDHRCRIKNFKAQII
FT                 LKDDATPKFLKARPIPYAYREKVIAELTKMEDLGQIERVDYSEWASPLVVV
FT                 PKSGGRIRITGDFKDTINSQLCVNQYPLASPEELFNTVSGGHTFSKLDGTD
FT                 AYHQIEVDENSKKFLVINTPKGLYRYNVLPQGIASSPAIFQECMDRILQGI
FT                 QAAGSYLDDGICTGRTDQQHLKTLKKIFQRMREANYHLSREKSEFMKKRLT
FT                 YLGHIITKDGILTDPSKVEDIINMEKPKDVGELRSFLGLINFYAKFVPFLS
FT                 DICTVLYKLLTDESKWKWTAECNQAFMKVKSELASNRLLTLFDPSIPIGLA
FT                 ADASSKGLGIILFHRFPDGTERPIQFASRTLSKAELNYSQIEKEGLSIMFG
FT                 LKKFYKYLLGRKFILVTDHKPLLAIFGPKTSLPPLVATRLHHWSFNLSQFQ
FT                 YTIEYRKTTEHGNVDALSRLPASKNPMTTEEEEAVQINAVMEETLDALPVT
FT                 AKKIRFYLSRDTTLSKVQRWTQTGWPDKLTEGETEFRPFLSRKEELHVQQG
FT                 VLMWGSRAVIPTALRIKLLNELHSCHSGIVRMKSLARQYIWWPGIDEDIEK
FT                 IAKSCSTCAAVQPNPTSAPLHPWQYPDNPWERLHIDLAGPFLGKMWLVVVD
FT                 AYTKWPEIYCLNQDTTSNAIIIKMREVIGRFGLPLQIVSDNGRQFVSTEFE
FT                 NFCKQIGVKHTTSSVYHPRSNGEAERMVQTFKMAMKKGEGELDARLQNFLT
FT                 TYRQTAHATTGASPCELMLGRKTRNKFDLIMPDVKETVSKSQQQQRENYDK
FT                 KSKMRSYSAGQHVWVKTFKKGEPKWSYGNVMEVIGPLTYIVEVDGQEMKRH
FT                 IDQIVEAVSPIKTPPQPTAEREDEPDVLQEEQEEFEEPTATGNDEPPEEPV
FT                 IAPSTSSSRPTRERKAPARFGYKIKGQPS"
XX
SQ   Sequence 4104 BP; 1340 A; 876 C; 963 G; 925 T; 0 other;
     tcttttctgg cgacgagtct gactttagtt tttgaaattt taaaatagtg caagttttaa        60
     aattcaaaat gccatcggtt ggtaatttat cagtgtttaa tccaagtgtg gatgacatta       120
     ctgtgtggtt acaagctttc gactcttatc tcctggccaa tgatttggat ccctacaccg       180
     taccgacagg gggaaaacta gatcctggaa cagtttcgaa gtgtagagca atctttctgt       240
     cgtcaattgg attgtccaca ttgtcaacgc tcacatcttt actgtcacca gcgaagccgg       300
     agtcaaaaac tttagaggag ttgaagaaga cgcttactga ccactttaag ccaacgccga       360
     aagcgctcct ggaacgttac aagttcacag ggagaaaaca gaaacatgga gagactgtgg       420
     cgcaatttgt agctgaattg aagaaaacag cacaatattg caaattcgaa gcatcaacaa       480
     caatgacgga gctggaagta aggatccgtg atcagttgct ttttggactg tctaacgaga       540
     aagcgcaaaa tcagttattc cagaaggatg ataacttatc gttagcagac gccattaaaa       600
     tagcagaagc acaagaatca gcagacgcca gcaccacgat ggtcagagag gggcacacca       660
     ccgccggtgg aggatcagat gtccacaaga ccagcacttc aaacaagaag aaaaataaac       720
     attttgagaa gaataaaagc agccaagagg ggaaggacaa ggatgagtgt ggaagatgtg       780
     gctcaaagaa gcacaacagc agtacctgtc ctcacaaatc agtggaatgc tatgagtgtg       840
     ggaagaaggg gcattttgcg aataaatgtc gcacagacgc cagcaagaag aaggagaaga       900
     acacgaagaa gttctctacc aacactgttg ctgccattca ctctcaccaa gctgctgatg       960
     aagataaagt gaaaatatct acaaagattg atggagtagc tcatgaatgg gaatgggatt      1020
     ccggatgcca gcgcagcgtc ctcagtgttg atttttggag gaatcaactt ggttcacgag      1080
     ccctggagaa gtcaactgta aaattcagaa cttaccagaa cgaagaattc tcaccacttg      1140
     gacttctaga ctgcagtatt cagtacaaag gtcagacgac aaaatacaaa attcctgtgg      1200
     ttgatggttc atcattattt ggccgtgacc ttattcgact gtttaagctt gattggaaag      1260
     aaatcatagc tcaacttaat caagttcaag ctgatgaaga agcaagttgc tcatcacttg      1320
     aagctctact gaaggagtat gacgacattt tcaccgtacc ggatcatcgt tgcagaatca      1380
     agaatttcaa ggcacagata atcctgaaag atgacgccac tccaaagttt ttaaaagcaa      1440
     gacccatccc atatgcgtac cgagaaaagg tcatcgcaga gctgaccaaa atggaggatt      1500
     taggtcaaat tgaaagggtt gactacagcg agtgggcgtc accgttggta gtagtaccca      1560
     agtctggagg aagaatccga atcaccggag acttcaagga caccatcaat agtcaactgt      1620
     gtgtgaatca gtatcccttg gctagccctg aagaattatt caacactgtg tccggtgggc      1680
     acacattttc aaaattggat ggtaccgatg cctaccacca gatagaagtt gacgaaaatt      1740
     ccaagaaatt tttagtcatc aatacaccga aagggttgta ccgatataat gtgctacccc      1800
     aaggaatagc atccagccct gccatttttc aagaatgcat ggacagaatc ctgcaaggaa      1860
     ttcaagcagc cggttcttat ctggatgatg gtatatgtac tggacgtaca gatcaacagc      1920
     atttgaagac tttgaagaaa atatttcaga gaatgaggga agccaattat cacctgtcca      1980
     gagagaagag tgaatttatg aagaaaaggc ttacctacct ggggcacatt atcactaaag      2040
     atggaatact tacagaccca tcaaaagtgg aagatatcat caatatggag aaaccaaaag      2100
     atgtaggaga attgagatca ttccttgggc tcatcaattt ttatgccaag tttgttccct      2160
     ttctctcaga catttgcact gttctgtaca agttacttac ggacgaatca aagtggaagt      2220
     ggacagcaga atgcaatcaa gcattcatga aggtcaagtc ggagttagca tcaaacagac      2280
     tacttaccct cttcgacccc tccattccaa ttgggttagc agcggacgcg agctcaaagg      2340
     ggcttggaat aatattattt catcggtttc ctgacggaac tgaacgtccg atccagtttg      2400
     catcaagaac cctcagcaaa gcggaattga actactctca aattgagaag gaaggactca      2460
     gcatcatgtt cggtctgaag aaattttaca aatatcttct gggacgaaaa tttatactag      2520
     taactgacca caagccatta ctagctatat ttggccccaa gaccagcctt ccacccttgg      2580
     tggcaacgcg attgcatcat tggagtttca acttgagtca attccagtac actatcgagt      2640
     acagaaagac taccgagcat ggaaatgttg acgcactttc cagattgcca gcaagcaaaa      2700
     atcctatgac aactgaagaa gaagaagcag tgcaaatcaa cgcagttatg gaggagaccc      2760
     tcgacgccct accagtaacc gcaaagaaga taagatttta cttatcacga gatacgacac      2820
     tgagcaaagt gcaacgttgg acacaaacag gttggccaga caagctgaca gaaggagaaa      2880
     cggagtttcg tcccttcctt tcaagaaaag aagaattgca tgtccaacaa ggagtgctga      2940
     tgtggggatc cagagcagtg ataccaacag cattacgaat caaacttttg aacgagctcc      3000
     acagttgcca ttccggcatc gtgaggatga agtcactggc gaggcagtac atttggtggc      3060
     cgggaataga tgaagacatc gagaagatag cgaaatcctg ctccacctgt gcagcggtcc      3120
     aaccgaaccc gaccagtgct ccacttcacc cgtggcaata tcctgacaac ccgtgggaaa      3180
     gactacacat tgatttagcg gggccgttct tgggaaagat gtggctagtt gtagtggacg      3240
     cctacacgaa gtggcctgaa atttattgtc ttaaccaaga caccaccagc aacgccatca      3300
     ttatcaaaat gagagaagtc attggtagat tcgggctacc attacaaatt gtctctgaca      3360
     atggaaggca gtttgtttcg acggagtttg aaaacttttg taaacaaatt ggtgttaagc      3420
     acaccaccag ttccgtttac catcctagaa gcaatggaga ggcagaacgg atggtgcaga      3480
     cattcaagat ggcaatgaag aagggggaag gagagctgga cgcaagattg cagaatttcc      3540
     ttactaccta ccgacaaacg gcacatgcta ctacaggagc atcaccgtgt gagctgatgt      3600
     tgggaaggaa gaccagaaac aaatttgatc ttatcatgcc tgacgtgaaa gaaacagtct      3660
     ccaagtctca acaacagcag cgtgaaaatt acgacaagaa atccaaaatg agatcatact      3720
     ctgccggtca acatgtttgg gtcaagactt tcaagaaagg cgaaccgaaa tggtcatatg      3780
     gaaacgtgat ggaagtcatt gggccactca catacattgt cgaggtggac ggccaagaaa      3840
     tgaagcggca tatcgaccaa atagtggaag cagtaagccc tatcaagacg ccacctcagc      3900
     cgacagccga gcgggaagac gagccagatg tccttcaaga agaacaagaa gagttcgaag      3960
     aaccaacagc aacgggtaat gacgagccac cagaagagcc tgtcattgcc ccgtccacat      4020
     cctcgagccg cccaactaga gagagaaaag ctccagcacg ttttggatac aagataaagg      4080
     gacagcctag ttagggggaa ggag                                             4104
//
ID   Gypsy-28_SiCu-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-352
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5105-5105 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 352 BP; 116 A; 60 C; 65 G; 111 T; 0 other;
     tgtgatgtat ttgaatattt agctattaag caaatatata ttaatgtaat ttcattagta        60
     aaatagataa cataggttga aggacagttc atcatgagtt cgtcgtccgc acgtgtgtgc       120
     ctgggagaac catggcacca gcaagagagc aagatagatt tgaccatgag gcttgagcct       180
     cattcgatta tattccagct agggaatagc acgttctctc ctcagtacca actgatgtaa       240
     aatacccatg tactttacct ataatatctt ttagaataaa gatactgatg ttgtatgtag       300
     aaaagcattg tgtataaaac ctactggctt tattcatttc acatacataa ca               352
//
ID   Gypsy-28_SiOr-I repbase;    DNA;    INV; 5367 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5367
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 363-363 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1259..5098
FT                 /product="Gypsy-28_SiOr-I_1p"
FT                 /translation="MNLSSLSTLENFDCEGEISSVALRWRKWKRALNIYLE
FT                 AASIDSPAKKRAVLLHMGGIGIQEIYYNIPGAHVETSVDVDIYEVAVQKLD
FT                 EYFAPKQSKVFERHIFRLLKQDQGEKFERFLIRLRHQAEKCQFQNLEENLI
FT                 DQIVEKGCNLELRKKILAVGDSMTLEMIINEANSLESVTRQLGEFSGNPDT
FT                 LTQDINLLQHKPSGSRREEEFCRRCGSTKHSSTSLNCPAVNQECGKCGFKG
FT                 HFMSQCRTAPGKRKNKRLNVIPQKRQSKFKKAKMSNAHAIEENSEDEGDYV
FT                 FHIDQDDTLSCKIGGVNIDMLIDSGSKCNLLSLDAWQYLKRERVQVHNQVK
FT                 NPDKIFLAYASKAPLTVVGSFEAFIDVGNQPIKAVFYVIKNGNKNLLGKRT
FT                 AIELGVLKIGLHNVNATTSPFPKFKDTVVDIPIDETIQPVSQPYRRVPIPL
FT                 EEKINRKLKELIDLDIIEEVAGSSKWVSPIVPVLKDNGEVRICLDMRRANS
FT                 AIMRENHPLPTMDQLLPKFRGAKIFSKLDIKNAFHQIEISPASRHITTFIS
FT                 SKGLLRYKRLMFGISCAPEIFQKLLERVLAKCDGVVNFIDDILIFGATLEE
FT                 HNMRLNNVLTTLDQNNILLNKDKCMFRLRSVEFLGHQLSAVGIKPLESYIG
FT                 AINTFRAPKTIMEIQSFLGLVNYVGKWIPNLATLTDPLRKILRLKLGKNSN
FT                 IESYWKAEQQHSFKKLKETLSSIKTLGYYHPGDRTQVIADASPVGLGCVLI
FT                 QFDESGPRIISFGNKSLTACEKRYCQTEKEALALVWSVEHFHMYLYGKETF
FT                 ELVTDHKPLEAIFKPTAKPCARIERWVLRLQCYNYKVVYRPGKFNIADVLS
FT                 RLPRIENINKSFDENSICQILSYSRPVAVSLSDIKRASEKDQEITKVKEAI
FT                 FQDVWDQSINQYKIFSSELCFHEGILLRGDKIVIPSQLRPKVMEAAHEGHP
FT                 GIVAMKKRLRTKVWWPKIDADAEKLVKACKGCTLVSAPNRPNPMKRRELPS
FT                 QPWVVVAIDFLGPLPSNEFIFVIVDYFSRYKEIKVLKDISAQSTISTLQEI
FT                 FSRLGYPSCINADNGRQFTSIEFKNYCKETGIELFHTIPYWPQQNGEVERQ
FT                 NRDILKRIKISCALKQNWKRDLLDYMMMYNSTPHSITGKSPSELFFRRFFR
FT                 DKIPSISDLENNNLDSEVRDRDKILKEQGKEYGDRKRKAVETNLEPGDKVY
FT                 VKNLIKSNKTCPNFNPSPHTVINKNGGDIQIRNDETGQDYRRNIIHLKKIE
FT                 GEWKVTNKPEQNDSSHEHD"
XX
SQ   Sequence 5367 BP; 1991 A; 833 C; 1061 G; 1482 T; 0 other;
     gtggcgacga ggactaaacc aaacagatat tgtgattcgg ttaaaataca atcgagtaag        60
     tacctaaagt tttaattgga aaattacacc aaatatttac tatatattga ccgatttcga       120
     aaaataaatt aacactttaa ctgccacgtt aaacactagt gactgacatt tctttggtaa       180
     ggaatcggcc gtgtcaaacg ttctgggttt attttacatc gtattgtata ttagaatcat       240
     tttcctggtt ccttcaagta tcagagtaca ttaataacaa gacaatgaaa attttatttt       300
     ataaagaaat ggaaataggc agctaaaatg ttaacaaaaa aaaattcttt tggtgttaat       360
     ttataatact aagtacatgt gtacatttaa gcttaattta atacaaataa aagagactaa       420
     ggtccaaatt agagggacgt aggtccatat tagagggacg taggtccaaa ttagagggac       480
     gtaggtccaa acagagggac gtaggtccaa acagagggac gtaggtccaa atcagaggga       540
     cgtaggtcca aatcagaggg acgtaggtcc aaacagaggg acgtaggtcc atatcagagg       600
     gacgtaggtc caaatcagag gacgtaggtc caagttagag ggacgtaggt ccaagttaga       660
     gggacgtagg tccaaaacag agggacgtag gtccaaaaca gagggacgta ggtccaaatc       720
     agagggacgt aggtccaaat cagagggacg taggtccaaa ttagagggac gtaggtccaa       780
     atcagaggga cttaggtcca aatcagaggg acgtaggtcc aaatcagagg gacgtaggtc       840
     caaattaaag ggacagaggt gcaaattcga gtttcattta tatgccatta agagattaag       900
     tcgaaattaa atgacaaata tatatatata tatatatata tatatatata tcgataatag       960
     ttaatatttg gtgttaaaat gtaaattaat taaataatat gtatactgta aatgtatcat      1020
     aactaggtaa caaagttata acaaaaaaaa aaaaaaaaaa atcagtaatt attaattttg      1080
     ttaagctttt ttaagccata tttgaaataa agtaataata attgcaaatt gtttatctga      1140
     acattagatt tagatcattg tccttaatta ttaaagcgtt aatgtttatt tatacctaag      1200
     atgtgtatat acgactcaat cctatatata tttttattcc agaaaattaa aatcgacgat      1260
     gaatttatca agtctttcaa ccctggagaa ttttgattgt gaaggagaaa tttcttctgt      1320
     tgctttaaga tggagaaaat ggaaaagggc tttgaatata tacctagagg cagcaagtat      1380
     cgacagtccc gcaaaaaaac gagctgtatt attacatatg gggggaatag gcattcaaga      1440
     aatatactat aatattcctg gggcacatgt tgaaacttcc gttgatgtag atatttatga      1500
     agtcgctgtt caaaagttgg atgaatattt cgctcctaaa caaagcaagg tgtttgaaag      1560
     acacattttt agattattga agcaagatca aggagagaaa ttcgagagat tcctcatacg      1620
     cttaagacac caagcagaaa agtgtcaatt ccagaatttg gaggaaaacc ttatcgatca      1680
     aattgtggaa aaaggatgca acttagaact gagaaagaaa atattagcag ttggagatag      1740
     catgacttta gagatgatta taaatgaagc taattcctta gaatccgtaa cacgacagct      1800
     cggggaattc tcaggaaatc cagatacgct aacccaggac attaatttat tgcaacataa      1860
     gccatctgga agtcgtcgtg aagaggaatt ttgtaggcga tgcggtagca caaaacattc      1920
     ttctacaagt ttaaattgcc cagctgtaaa tcaagaatgc ggaaaatgtg gatttaaagg      1980
     acattttatg agccaatgca gaacagctcc tggaaaaaga aaaaataaaa ggttaaacgt      2040
     cattccccaa aagcggcaat ccaaatttaa aaaagcgaaa atgtcgaacg cacatgccat      2100
     tgaagaaaac tccgaagatg aaggcgacta tgtgttccat atcgatcaag acgacacact      2160
     atcatgcaaa attggtggag tgaacattga tatgctcatt gactcaggca gtaaatgtaa      2220
     tttactgagc ctagatgcct ggcaatattt aaaacgtgag agagttcaag tccataacca      2280
     ggtaaaaaat ccagacaaaa tatttttagc ctatgccagt aaggcaccct tgactgtcgt      2340
     gggatctttt gaagcattta ttgatgttgg aaatcagcct attaaagccg tattttatgt      2400
     aataaaaaat ggaaataaaa atctacttgg taaaagaacg gcaatagagc taggtgttct      2460
     aaaaattggt ttacataatg tcaatgccac aacaagccca tttccgaaat ttaaggacac      2520
     agttgtagat attccaattg acgaaacaat acagccggta agtcagccat atagacgagt      2580
     accaattcca ctggaagaaa aaatcaacag gaaacttaag gaacttattg atttagacat      2640
     cattgaggaa gtggcaggat catctaaatg ggtatctcca atcgttccag tattaaagga      2700
     caacggggag gttagaatct gccttgacat gcgaagagca aattcagcta ttatgcgtga      2760
     aaatcatcca cttccaacga tggaccagtt attaccaaaa tttagaggtg caaagatatt      2820
     ttcaaaatta gatataaaaa acgcattcca tcaaatcgaa atttcaccag cctcccgtca      2880
     tattactaca tttattagca gcaaaggatt actacgatat aaaagactga tgtttggcat      2940
     atcttgcgct ccagaaattt ttcagaaatt attggaacgt gtacttgcca aatgtgacgg      3000
     tgttgtcaat ttcatcgacg atattttaat ttttggagca actctagaag aacataatat      3060
     gagattaaat aatgttttaa caactttaga tcaaaataac atcctactaa ataaagataa      3120
     atgcatgttt agattgagaa gcgttgaatt tttaggtcat cagctctcag cagtaggtat      3180
     caaaccacta gagagctaca taggagccat aaacacattt cgagcaccca aaactattat      3240
     ggagatacaa agttttttgg ggttggtaaa ttacgtggga aaatggatcc ctaatctagc      3300
     aacgctgaca gacccgttaa ggaagatact taggttaaaa ttaggaaaaa attccaacat      3360
     agagtcctac tggaaggctg aacagcaaca ttcgttcaaa aaactaaaag agaccctatc      3420
     cagcatcaaa acattgggct attatcatcc aggtgacaga acccaagtca tagctgacgc      3480
     cagtccagtt ggtcttggct gtgtacttat ccaatttgac gaatctggtc ctcgaattat      3540
     atcatttgga aataaaagcc tgacagcttg tgagaagaga tattgtcaga cggaaaaaga      3600
     agctcttgcg ctggtatggt cagtggaaca tttccatatg tacctatatg gaaaagaaac      3660
     atttgaattg gttacagatc acaaaccact agaagccata tttaaaccaa cagccaaacc      3720
     gtgtgcgcgc atagagagat gggtccttcg actacaatgt tacaattata aagtagtata      3780
     ccgccctgga aaatttaata tagcggatgt tttatccaga ctgccaagaa tagaaaatat      3840
     aaataaatca tttgatgaaa attctatttg ccaaatacta agctattcaa gacctgttgc      3900
     tgtttcatta tctgatatca agagagcttc agaaaaagac caagaaatca ccaaagtaaa      3960
     agaagcaata tttcaagatg tttgggacca atcaattaat caatataaaa tatttagttc      4020
     agaactgtgt tttcatgaag gaattctatt aagaggtgac aaaatagtta taccatcaca      4080
     acttaggcca aaagttatgg aagcagctca cgaaggtcac cctggcatcg tagctatgaa      4140
     gaaacgttta cgaacgaaag tgtggtggcc taaaatcgac gccgacgcgg aaaaacttgt      4200
     aaaggcttgc aaaggatgta cgttggtttc agcgccgaat agaccaaatc caatgaaacg      4260
     acgggaactg ccttcacagc catgggtagt tgttgccatt gatttcttag gcccacttcc      4320
     aagtaacgag tttatattcg tcatagtcga ttattttagc cgttacaagg agattaaagt      4380
     attaaaagat atttcagcac aaagcacgat tagtacatta caagaaattt tctctaggct      4440
     agggtatcca tcttgcatta atgctgataa tggcaggcag tttacaagca ttgaatttaa      4500
     aaactattgt aaagaaaccg gtatcgaatt atttcacact ataccttatt ggcctcaaca      4560
     aaatggcgaa gttgaacgac aaaatcgtga catactaaag agaattaaaa ttagctgtgc      4620
     tttaaaacaa aactggaaaa gggatcttct cgattacatg atgatgtaca atagtacacc      4680
     gcacagtatt accggtaaat ctccatccga attgtttttt cgaagatttt ttagagacaa      4740
     gattcctagc atcagcgatc tagaaaacaa taatttagac agtgaagtta gagacagaga      4800
     caaaatatta aaagaacaag gaaaagaata cggggacaga aaacgaaagg cagtagaaac      4860
     taatttggag ccaggtgaca aagtttatgt gaaaaattta attaaaagta ataaaacttg      4920
     tccaaacttc aatccaagtc cgcatacagt aataaataaa aatggaggtg atattcaaat      4980
     taggaatgat gaaacaggtc aagattatcg aagaaatata atacatttaa agaaaattga      5040
     aggagaatgg aaagtcacta ataaaccaga acaaaatgat agtagtcatg agcatgacta      5100
     gggaactatt gaatgaagtt aaatgtattg tttggatagt gggtattttg tgatttaact      5160
     taattttatt gttacaaaat agtgtagtcc ctaagagatt attattagca ttaagttata      5220
     ctagttcgtt gtttattgta aattagaatt agttaaatta atatatctag gtaataagtt      5280
     atatcgtttt agttataggt tgcagaagtt atatcttgtt gctaattttg ttaatgtatt      5340
     tcaatttgtt taaaagaaga aggtgga                                          5367
//
ID   Gypsy-28_SiOr-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 397-397 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 61 A; 26 C; 28 G; 57 T; 0 other;
     tgtagtgttc aatagtttag agattattat tatataaaaa atgtactctg aataactgta        60
     aacaacaatg tttatcttta cgtaatgcgg aaaggcgagt tcagtcaata cacgatagcc       120
     agcaagcaaa cagtatttta ttttaaaccc cagagttttc gtgtattcta ca               172
//
ID   Gypsy-28_SpEx-I repbase;    DNA;    INV; 4092 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4092
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4097-4097 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..942
FT                 /product="Gypsy-28_SpEx-I_1p"
FT                 /translation="MCESGNDAKTDAAASRDIFRVGVRVPPFWPEKPAIWF
FT                 AQVEGQFAISNITADTTKFFYIVSHLDPRYASEVEDIIVNPPAAEKYERLK
FT                 TELIKRLSESREKKVHQLLTHEELGDRKPSQFLRHLQHLAGPKVPDEFLRT
FT                 IWSSRLPSSIQPIIASQESSPLEVLADLADRIHDVVPRGHEVAVASSTHGV
FT                 SDLHTINQQMAELKKQVELLTQKVDKISRRNRSNSRNHSSSRQNRSHSSSK
FT                 VHPTCWYHFKFGEKATKCDQPCDFKSENFKSSQ"
FT   CDS           912..4067
FT                 /product="Gypsy-28_SpEx-I_2p"
FT                 /translation="FQIGKLQKQSVMAADDCSTCKGRLFISDKRTGVQFLI
FT                 DTGSDVCAYPRSYLKNQLHYRYNKQCNYELVAANGTPIPTYGTYQLTLNLG
FT                 LRREFIWKFIIADVSRPIIGVDFLSYFNLLVDCRQQKLIDSITNLTVGAPS
FT                 TKEITHELVSLKTITGHSTYLDLLRRYPEITRPAGSQIKPIHNTKHHIRTT
FT                 PGPPVTSRPRRLAPDRLKIAKKEFEQMLQNGTARRSESPWSSPLHLVPKKD
FT                 DGWRPCGDYRQLNSRTVPDRYPVRHIHDFAYQLSGSTIFSKIDLVKAFNQI
FT                 PVHEDDIKKTAITTPFGLFEFPAMTFGLRNAAQTFQRFLDEILQGLDFTFG
FT                 FLDDILVFSKGEKEHIEHMTKVFDQLKKYGVVINSNKCVLGVXEVTFLGYH
FT                 VSAAGIRPLPEKVQAIRDYPIPKTAKELRRFLGMLNFYRKFLPGAAQIQAP
FT                 LNQALSGPSIKGSTPIVITADIQKAFDACKNNLLEATLIAHPDPEAELALF
FT                 TDASDVAIGAVLQQRRQDNWQPLGFFSRKLSPAQTKYSTYDRELLAIHEGI
FT                 KYFRYMLEARTFKVFTDHKPITFAFTTSRDNCSPRQHRYLDYISQFTTDIN
FT                 HITGNDNVVADAFSRLESVDTTINYKHLQIEQEKDQELQHLLRNNTALKLD
FT                 KVKTMDAYIYCDQSTSRPRPFITPTFRKQIFNNLHNLSHPGPNATAKLISE
FT                 RFVWPRIRRDCRTWAQQCADCQRNKVTRHTQSPLSPFPVPSNRFSHVHLDI
FT                 IGPMPPSSGFRYCLTAVDRFTRWPEAYPLADITAETCASTFISGWVARFGC
FT                 PESITTDRGKQFDSQLFQSISSIIGAYHRPTTSYHPQCNGLVERMHRQLKA
FT                 AIMCHNNAQWSEALPLVLLGMRSAWKEDVQASSAELVYGESLRLPGEFLKP
FT                 ITHQSMDEADFAARLRQHISKLSPVSTSSHGEKIFYVPKDLNTATHVFLRK
FT                 GPLKKSLESPYSGPHLVIERGPKTFIIEVQGKRITVTIDRLKPAYMANSDE
FT                 KMSHETSSSPQQPSAPWPVPPQRQPETTTRSGRTVRFPRHLSHYRP"
XX
SQ   Sequence 4092 BP; 1231 A; 1053 C; 829 G; 976 T; 3 other;
     gtggtgaccc cgagacttaa cacgtgctaa tagtgctgcc tgtgctacct acctcgtgcg        60
     ggaatcgtgg actcagcgaa cctaagtgac aatatccaag tgccttacgt gatatacaaa       120
     atgtgtgaat caggaaatga cgcgaagact gatgcagcgg catcacgcga catttttcgc       180
     gtgggcgtgc gcgtgccgcc attttggccc gaaaagcccg cgatttggtt cgcgcaagta       240
     gaaggccaat tcgcaatttc aaatattacg gcggacacaa caaaattctt ttacatcgtc       300
     agtcatctcg acccgagata cgcgtcggag gtagaggata tcatagtcaa cccaccagcg       360
     gccgaaaaat acgaacgatt aaagacggaa cttattaagc ggctctcgga atcgcgggaa       420
     aagaaggtgc accaactact gacacacgag gagttaggtg acagaaaacc gtcgcagttc       480
     cttcgccact tgcagcacct cgccggcccc aaggtacccg atgaattttt gcggacaata       540
     tggtccagtc gtttgcctag cagtatacaa ccaataatcg cctcacaaga atcatcgcct       600
     ctagaagttc tagctgatct cgccgacagg atccatgatg tcgtgccgag aggtcacgaa       660
     gttgcggtcg catcgtcaac acatggggtg agtgatttac ataccataaa tcaacaaatg       720
     gccgagctga agaaacaagt ggaattatta acacaaaaag ttgataaaat ttcccgccga       780
     aatagatcaa acagtcgtaa ccattcgtct tcccgccaaa atcgatctca ttcgagtagt       840
     aaggtacatc caacatgctg gtaccacttc aaattcggtg aaaaggcaac taaatgtgat       900
     caaccctgtg atttcaaatc ggaaaacttc aaaagcagtc agtaatggcg gctgacgact       960
     gctcaacttg taaaggccgc ctattcattt ccgataaacg taccggcgta cagtttttaa      1020
     tagatactgg ttccgacgta tgtgcctacc caagatcgta tctaaaaaat cagctgcatt      1080
     accgttacaa caaacaatgt aactacgagc tggtcgctgc caatggcaca ccgataccta      1140
     cctacggcac gtaccaactt actctgaatc ttggattacg ccgtgaattt atctggaagt      1200
     tcattattgc agacgtgtca agacctatta taggcgtcga ttttttaagt tactttaatt      1260
     tactagtcga ctgtcgacaa caaaagttga tagactcaat aacaaacctg accgtcggcg      1320
     cgccttcaac caaagaaata acacatgaac tagtgtcgtt aaaaactatt acaggtcatt      1380
     caacttatct cgaccttctt cgacgctacc ctgaaattac gagacctgct ggatctcaaa      1440
     taaaaccgat ccataacacc aagcatcaca taagaactac acctggaccc ccggtaacat      1500
     cacgaccgcg ccgcttggca cccgatcgcc tgaaaatcgc gaagaaggaa ttcgagcaaa      1560
     tgttacaaaa cggtacagct cgtcgctctg aaagtccatg gtcgtctcca ttacatctcg      1620
     tacctaaaaa agatgatggc tggaggccat gcggcgatta cagacaatta aattcaagga      1680
     ccgttccaga tcgataccca gtaagacaca tccacgactt cgcgtaccaa ctgtcaggat      1740
     ccaccatatt ttctaaaatt gatctcgtca aagctttcaa ccaaatacca gttcacgaag      1800
     atgacattaa gaaaactgct attacaacgc cattcggatt attcgaattt cccgccatga      1860
     ccttcggttt gagaaatgct gcacagacgt tccagagatt cttggacgaa attcttcaag      1920
     gtttggattt tactttcgga tttcttgatg acattctcgt attttcaaaa ggggaaaaag      1980
     aacacattga acacatgacg aaagttttcg accagttaaa aaaatatggc gtcgttatta      2040
     atagtaacaa atgtgtttta ggtgttagwg aagttacatt cttaggctat catgtatctg      2100
     cagccggcat acgacctctc ccagaaaaag tacaggccat ccgtgattac cccattccca      2160
     aaacagctaa ggaattgaga agatttttag gtatgttaaa tttttaccgt aaattcctwc      2220
     ctggtgctgc gcaaattcag gcccccctca atcaagcttt gagcggcccg agtatcaaag      2280
     gatcaacgcc tattgtcata acagctgaca tacaaaaagc gttcgacgca tgtaagaaca      2340
     acttattaga agctacgctc atcgcgcatc ctgacccaga ggctgagtta gcactattta      2400
     ccgacgcatc agatgtggct atcggtgctg tcttacaaca acgaagacag gacaactggc      2460
     agccactagg attcttctct cgcaaattat cacctgctca gaccaagtac agcacctatg      2520
     accgtgagtt gctcgcgata catgaaggta taaaatattt taggtacatg ctcgaagcga      2580
     gaacatttaa agtgttcacc gaccataaac ccatcacatt cgccttcaca acaagccgag      2640
     ataactgttc accccgtcaa caccgctacc ttgactacat atctcaattc accacagata      2700
     tcaaccacat cactggaaat gacaacgtag tcgccgacgc attttcacga ctggaaagcg      2760
     tcgacactac catcaactac aaacatttgc aaatagaaca ggagaaagat caagaattac      2820
     agcacctact aagaaacaac acagcgttaa agttggataa agttaaaact atggatgcct      2880
     acatatactg cgaccagtct acttctcgcc ctaggccatt catcacacca actttccgca      2940
     aacaaatttt caacaatctt cataatctaa gtcatccagg tcccaacgca acagcaaaac      3000
     tgatatccga aagatttgtg tggccgagga tacgtcgaga ctgcagaaca tgggctcaac      3060
     aatgcgcaga ttgccaacgc aacaaagtta cccgtcacac tcaatctcct ctttccccat      3120
     ttcctgttcc ttccaaccgt ttttcccatg tccaccttga cataataggc cctatgcctc      3180
     catcttctgg tttcaggtat tgccttacag cagtggacag gttcactcga tggccggaag      3240
     cctatcctct cgctgatatc acagcggaga cctgcgccag taccttcatt tctggctggg      3300
     tcgctcgctt cggatgtcct gagagcatca ctacggatcg agggaaacaa ttcgactctc      3360
     agctgttcca gagcatctcg tcgatcatag gtgcctacca tcgtcccaca acatcgtacc      3420
     acccgcagtg caacggtttg gtggagagga tgcacagaca gctgaaggcc gccatcatgt      3480
     gccacaacaa tgctcagtgg tcagaggccc tacctcttgt tcttctgggt atgagaagcg      3540
     cctggaagga agatgtacaa gcctcttcag ccgaattggt gtacggcgag tcactccggt      3600
     tacctggtga gttcttaaaa cctataactc accagagcat ggatgaagca gacttcgcag      3660
     cacggctgag acaacatatt tcgaagcttt cacctgtatc aacttcgagc cacggtgaga      3720
     agatatttta tgttcctaaa gatctcaata cagccactca cgttttcttg cgaaaaggtc      3780
     ccttaaagaa gtcattagaa tcaccgtact ctggtccaca cttagtcatt gaaagaggac      3840
     ccaaaacctt cataatagaa gttcaaggga aacgcattac agtaaccatt gacagactta      3900
     aaccggctta tatggctaac agcgatgaga agatgtcaca tgaaacatca tcttcacctc      3960
     aacaaccatc tgctccatgg ccwgttccac cacagcgaca acctgagacc accacacgaa      4020
     gcggaagaac tgtgagattt ccacggcatc tttctcacta tcgaccgtga accggtctca      4080
     gcgggggagt ga                                                          4092
//
ID   Gypsy-28_SpEx-LTR repbase;    DNA;    INV; 546 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-546
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4157-4157 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 546 BP; 174 A; 145 C; 82 G; 145 T; 0 other;
     tgtagggtat agctaagaga catacataat tatacactta cataatcaca tacatacata        60
     aatacataca catacataca tacatacata cataatacat acatacatat aaataactca       120
     tacacaataa gtctaaacgt tacactaaca atctataaaa atatttattt gtatttgtat       180
     aacatctgta cacagcctta tacgcacgca cgcttgtaca cacccttagc tatacctacc       240
     gtccagccgc tagcggagcc ccggcgcccg cgttgccaaa atacctaacg ttcggggaac       300
     cgctcggtat acggcgcgct gtcgccgcct acaccccgcg ctcacgagcc gcgcccctcg       360
     ctcgccctcg acagtccgca tcggccagcg atcgcgcgcg catcgccgaa cattactcgc       420
     gtaatattta agttaatgta caaatatctt attaactatt gtatgataac ttttgtattt       480
     caataataaa catttataag ttagtgcgta gtgtttaatt tctacctgaa cactatagac       540
     actaca                                                                  546
//
ID   Gypsy-28_TrNi-I repbase;    DNA;    INV; 5687 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5687
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 231-231 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           791..1957
FT                 /product="Gypsy-28_TrNi-I_1p"
FT                 /translation="MDIILTLYNDLKKIRINLIKLGPKRRTERVLENKLIE
FT                 IDAIYQQYETWIIDFNDKVKNKYYSSQDILLIQKHCREFLDLHEDILLLCQ
FT                 SDKSESFSKMSSFDLKTALNLLPVMTNEESNTKQLIDNIEYYNSILKESSC
FT                 KQNLINFVLKSRLSQEAKIKLKAKYDTVDELINDMRSVLLCKKAATAIQNK
FT                 LQRIKQNESSIADYGKDITELFVDLTIAQADGNDQCYNILKPINEKMATKQ
FT                 FASGLRNRRLSTIISARNYSSLKDAVQAAQDEEVTIGAPSGEVMGMYKQPY
FT                 NIFYNRSHSNNYRGQRGGRSNFYSYRGRGRGPQHGAHFASRGQWTQGGTTG
FT                 RKQHRGKFYNSNRGNQGMRRERNVNLMQNSETAGESEVTSNQFFRE"
FT   CDS           1935..5588
FT                 /product="Gypsy-28_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="HLISFFVNNGENVILSSDSNCYIYLHSPLYRNKKHYF
FT                 LVDSGASLSACTYKHALECNIPIHKENVSINGLGGKVQAIGYLYLSFFLND
FT                 ETISQKFYVFHTLPIKGSGILGRDFLNKFKAQLDFHKNILTLRNNISTFSL
FT                 PLVNKHNVTFDIPARSESIHFIYTNIDEDCVVSSKQLRDGVFLASSIGSPQ
FT                 NGLIPIRILNVTENDLTLTEIEPSIEKLSKFDVCIFEKTQKNADRVKKLFS
FT                 LMKLKHLNDEEQKTIENICAKYSDIFYLPGDQLTTTDIYTHTISVKPNTNP
FT                 VFSKQYRLPYSQKDEVKRQINKMLEEGIIEPSKSDWSSPILLVPKKSDTTE
FT                 DKKWRLVVDYRKLNNCIEDDKFPLPDITEILESLTGSIYFTHLDLHQGYYN
FT                 VKLDENSRKFTAFYSGQYQMTRMPMGLKTSPSSFSRMITMAMAGLNYEKCL
FT                 IYLDDLIVFGRNLTVHNKNLQDIFERLRAVNLKLNPAKCDFLRKEILYLGH
FT                 VISSEGIMPDPAKITTVQNYPRPTNTDEVKRFVAFTNYYRKFLPNFAEIAH
FT                 PLNKLTRKGVPFEWNTECEQSFETLKQRLASPPILQYPDFSDQNRFIVQTD
FT                 ASNNAIGAILSNGNGLPIAYASRSLNKGEKNYPVIEKELLAIVWAVKYFRP
FT                 YLYGRPFKVLTDHKPLVYLFNMKDPSSRLMKFRMTLEEYNFEVHYVKGSDN
FT                 AAADALSRITSKDLKEMHESVLNVMTRAQTRKLNNANSALDMDTSDLRPDQ
FT                 PKVVSTHIKPKESVELRFIDIKGLENLRKLRIITKENKILCYVESKRTVYV
FT                 KFLNSQSQMTRDEFVREIDKFCNLLNIEEIYILKSKDNDIFIKKLLEEIKN
FT                 NKSRCGPRICILSDVKRIENKDDKKVILNDFHLLPSSGHAGMRRMSNNIKK
FT                 YYFWPGIDNDVREFVKRCDKCQRQKYSLPKKEPMVITSTANTAFEKIFLDL
FT                 VGPLETDNDNFTYVLTLQCELTKYVEGYPLISKKAEEVARSFVNNFILRYG
FT                 VPKVIATDRGKEFLSEIFQKVCTLLNIEQLNSTAYHHQSIGALEVTHKHLN
FT                 AFLRIQTENHPELWSKWIPFWCFAYNTGVHTETGFTPYELVFGKKCSLPSN
FT                 LTNDLEPLYNFESYPHELKYRLQLSQREARNNLVKSKMNRKIMYDKYVNPV
FT                 SYNENDLILVKNDTLGKLDSIYSGPYKVVKDIPPNVEIINKYGKKNIIHKN
FT                 RTKPYHTN"
XX
SQ   Sequence 5687 BP; 2086 A; 829 C; 1069 G; 1703 T; 0 other;
     tggcgaccct gccaaagagg tcaacacgcg cgccgcgaat ttgagacgtt cgagtgtact        60
     gtgtacctac ttaagtactg cgaattatta gtaactatgg ggccagggca gatttattat       120
     aattacgaac ttaacgtgag tgtacgtata atctacgacc atgggcaaac aacagtctaa       180
     agaagagacc ttcgtcatcc aaaatgctgc aggcagtaac gaagcgaaaa ctgacgaaat       240
     tcgttttcat atgtctataa caaatatttt cctggccatt atcttgttga ttatactact       300
     tggggtgata tacttcgtgt accggctgta tagaagatgc catgtacgat ggataacaag       360
     tgaaatcaat cggacaacta tgatgaggag atcttttctt cgccgtcgtt tgcagccggg       420
     ggtcaacgat aacactgcta aaacatattc agaagatatg gtgtgaagca taaaagtgtg       480
     taaaagtgcg ataagtgaaa aaaaaaaaag tgcttaaaaa tgtgttagtg tggaaaagta       540
     taaattaatt ttaatcgttt caataatcat atgcaaatat tatatcaatc gagttgcgta       600
     gtatcttagt tttaaaataa tgcagtgcct taccaaatac ggactgaacg tggattgaac       660
     tttgaactat ggtgttaatt gcgtttgttt gcattcgtac ttaattataa aacttaatac       720
     taatgttata atatgaatta caggtacata aatattttac tttgctctac gttgtggtgg       780
     taagtaccta atggatataa ttttaacatt gtataatgat ttaaagaaaa taagaataaa       840
     tttaataaag ttaggaccga aacgaaggac agagagagtg ttggaaaata agttaattga       900
     aattgatgct atttatcaac agtatgagac ttggataatt gattttaatg ataaagttaa       960
     gaataaatat tatagtagcc aagatatttt attaatacaa aagcattgtc gtgaattttt      1020
     agatttacat gaggatattt tattgttgtg tcagagtgat aagtcagaat ctttttcgaa      1080
     gatgagttca tttgatttaa aaactgcctt aaacctttta cctgttatga caaatgagga      1140
     gtctaataca aagcagttga ttgataatat agagtattat aattctattt taaaagaaag      1200
     ttcttgtaaa caaaacttaa taaactttgt gctaaaaagt agactttctc aagaagctaa      1260
     gataaagtta aaagcgaaat atgatactgt agacgagtta ataaatgata tgagaagtgt      1320
     gttattgtgt aagaaagctg caacggcaat acaaaataag ttgcaaagaa ttaaacaaaa      1380
     tgaaagttca attgcggatt acgggaagga tattacagaa ttatttgtag atctgacgat      1440
     tgcgcaagcc gacggcaatg atcaatgcta taatatatta aaaccaataa acgaaaaaat      1500
     ggcaactaag cagtttgcca gtgggttgcg gaatcgtaga ttaagtacga ttatatctgc      1560
     tagaaattac agctcgctta aagacgctgt ccaggctgca caagacgagg aagtcaccat      1620
     aggtgcacct tctggagaag ttatgggtat gtacaaacag ccttataata ttttttataa      1680
     caggagccat tcaaataatt atagaggcca gcgtggaggt cgcagtaatt tttattcgta      1740
     cagaggacga ggccgaggac cgcagcatgg agcccacttt gcttctcgag ggcagtggac      1800
     tcaaggagga actaccggtc gcaaacaaca tagaggtaaa ttttataatt caaatagagg      1860
     aaatcaaggg atgcgtagag aacgcaacgt taatttaatg caaaattcgg aaactgcggg      1920
     agaatcggaa gtaacatcta atcagttttt tcgtgaataa cggtgaaaat gttatcttat      1980
     ccagtgacag taattgttac atttatttgc attcaccatt gtatcgtaat aagaaacact      2040
     attttttagt agattctgga gcatcgttgt cagcgtgtac gtataaacat gctctcgaat      2100
     gtaacattcc tatccataaa gagaatgtat ccataaacgg tttaggtggc aaagtacagg      2160
     caatcggata cctatattta tcattcttct tgaatgatga aacaattagt cagaagtttt      2220
     atgtttttca taccttgccc attaagggaa gtggaatatt aggccgtgat tttttaaaca      2280
     agtttaaagc tcaattagat tttcataaaa atattttaac attacgtaat aatatttcaa      2340
     ctttttcttt gccattggta aataaacata atgttacttt tgacattcct gctagaagtg      2400
     agtctataca ttttatatat acgaacatcg atgaagattg tgtagtgtca tcaaaacaat      2460
     taagagatgg agtatttcta gcaagctcta taggtagtcc tcaaaacgga ttaataccta      2520
     ttcggatatt aaatgtaact gaaaatgact taacacttac agaaatagag ccttccattg      2580
     agaaacttag taagtttgat gtttgcatat tcgaaaaaac acaaaaaaac gctgatagag      2640
     taaaaaagtt attttcatta atgaaattga aacatttaaa tgatgaggag cagaaaacta      2700
     ttgaaaacat ttgcgcaaag tattcagata tattctacct tccaggagat cagttaacta      2760
     caacagatat atatactcat actatttctg taaagcctaa cacaaatcca gtattttcaa      2820
     aacaatatcg tttgccatat tctcaaaaag atgaagtaaa acgccaaatt aataaaatgt      2880
     tagaggaagg tataatcgag cctagcaaaa gcgattggtc aagtccgata ctattagtac      2940
     ccaaaaagtc agatacaacg gaagataaaa aatggcggtt agtggttgac tatcggaagc      3000
     tgaacaattg tatagaggac gataagtttc cattaccaga tatcacagaa attttagaat      3060
     cattgacggg tagtatttat tttacgcatt tagatttgca tcagggttat tataatgtaa      3120
     agttagatga aaatagtaga aaattcacag ctttttattc gggacagtac cagatgacgc      3180
     gtatgccgat gggactgaaa actagcccga gttcgttttc aagaatgata acgatggcga      3240
     tggctggttt aaattatgaa aaatgtttaa tatatttgga cgatttgatt gtatttggcc      3300
     gaaatttgac agttcataac aagaatttac aagatatatt tgaaagatta agggctgtta      3360
     acttaaaatt aaatccagca aaatgtgatt ttctcaggaa agaaattctg tatttgggac      3420
     atgttatttc aagtgagggc ataatgcctg atcctgcaaa aataactact gtacaaaatt      3480
     atccgcgccc cacaaacaca gacgaagtaa aacgatttgt agcttttact aactactatc      3540
     gaaagttttt accaaatttc gctgaaattg cacatccttt aaataaattg accagaaaag      3600
     gcgtaccatt cgaatggaat actgaatgtg agcaatcttt tgaaacttta aaacaacgtt      3660
     tagcaagccc acctatatta cagtacccgg atttttcaga tcaaaatcgt ttcattgttc      3720
     aaaccgatgc gtcaaacaat gccataggag caatcttatc taatgggaac ggattaccaa      3780
     tagcttatgc tagtagaagt ttaaacaaag gcgaaaagaa ttatccagta attgaaaaag      3840
     aacttcttgc gatagtttgg gctgttaagt attttcgccc atacttgtat ggtcgacctt      3900
     ttaaagtact tacagaccac aaaccacttg tttacttgtt taacatgaaa gatccttcta      3960
     gtagacttat gaaattcaga atgacgttag aggaatacaa ttttgaagta cattacgtta      4020
     aaggttctga caatgcagct gcagatgcac tgtctagaat cacttcaaag gatttgaaag      4080
     agatgcatga aagtgtgttg aatgtaatga cgagagcaca aacaagaaaa ttaaataatg      4140
     ctaattctgc gttagatatg gatacttcag acttgaggcc tgatcaaccg aaagtcgtaa      4200
     gcacccacat caaaccgaaa gaatcagtcg aattaagatt tattgatatt aaaggattag      4260
     agaatttaag gaaactaaga ataattacta aagaaaacaa aatattgtgt tacgttgaaa      4320
     gtaaaaggac tgtttatgtg aaatttttaa actctcaatc gcaaatgacg cgagacgagt      4380
     ttgtgagaga gattgataaa ttttgcaatt tattaaatat agaagaaata tacatattaa      4440
     aaagcaaaga taatgatatt ttcataaaaa agttattaga agagattaaa aataataaga      4500
     gtaggtgcgg accacgcata tgtatattaa gtgatgtgaa aagaattgag aataaggatg      4560
     ataaaaaagt tatcttaaat gacttccatc tcttacctag tagtggccat gctggtatga      4620
     gacggatgtc aaacaatata aagaaatact atttctggcc cggtattgat aacgatgtac      4680
     gggaattcgt aaaacgttgt gataagtgtc agcgacaaaa atattcatta ccaaagaaag      4740
     aaccaatggt gattactagt accgcaaata ctgcatttga aaaaatattt ttagaccttg      4800
     ttggtccttt ggagacagat aacgataatt ttacatatgt attgacttta caatgtgaac      4860
     tcacgaaata tgtggaaggc tatcccttaa tttccaaaaa agcagaagag gtggcaagat      4920
     cttttgtaaa taactttatt cttaggtacg gcgtgccaaa agtaatcgca acagacagag      4980
     gtaaggagtt tttatcagaa atatttcaaa aggtttgtac attacttaac attgaacaat      5040
     taaattctac agcataccat caccaatcaa taggagccct agaagttact cataaacatt      5100
     tgaatgcgtt tttgcgtatt caaacggaga accatcctga gttgtggagt aagtggattc      5160
     cattttggtg ttttgcttac aatacaggcg tacatacaga gacagggttt actccctacg      5220
     agttggtgtt cggtaagaaa tgttctcttc ccagcaatct gaccaatgac ttggaacctc      5280
     tttataattt cgagagttat ccgcatgagt taaagtaccg tttgcaactt tctcaaagag      5340
     aagcaagaaa taatcttgta aaaagtaaga tgaataggaa aataatgtat gacaaatatg      5400
     ttaatcctgt tagttataac gaaaatgatt taattttagt taaaaatgat acactaggta      5460
     aattagatag catttattca ggtccttaca aagtagttaa agacatacca ccaaacgtag      5520
     agataataaa taaatatgga aaaaaaaata ttattcataa aaatcggacg aaaccttacc      5580
     atacaaattg atattaatta cctaaatgta catgatataa actataatat agagaaaaaa      5640
     aaaaaaagaa ccttactttt tttttttttt ttcaataagt gcggtga                    5687
//
ID   Gypsy-28_TrNi-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-150
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 185-185 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 150 BP; 43 A; 27 C; 18 G; 62 T; 0 other;
     tgtgaggcat gtattatacc tattgtaagt tctatcttgt attaatcttt gtatcaatgt        60
     aaccatttat attatgttat tctatcaaat atacttcagt attattcggg catccactgg       120
     tttcatttca tataaacacc gcaccttaca                                        150
//
ID   Gypsy-28_TrVa-I repbase;    DNA;    INV; 9052 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9052
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 273-273 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1190..2506
FT                 /product="Gypsy-28_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MSHNTRYRDQRRPVIFPENVRNKGQRSVSLEEGPYCH
FT                 VDQANCAMPCQASQQPPPPGVEVDMSFLEGQFSGGSANASAREVRSMDLTC
FT                 DNQYYGPSPNDQNDGISQGTSNATHQEPLAVLVNEMRSLSLNIDAKFNSLK
FT                 AEIPAIVASEVNNVTFKMHASQANRLDHLENSHATPVKYFDRPQVPVSQCW
FT                 DVVSHHTQKRKHPVNVNLKDCPVFSGDLELLHPVDFLEELGYLFDSYDLSD
FT                 SQKLTSVGRLLSGDALEWFKAYKSSFITLDQFKIAFLKYFWGPNPQNALRR
FT                 DCLNIDPESVKSNFASFFFKQFNKAKYLQDAIPEDALISTILQNFPYHLQV
FT                 SLLQSEDQSQDSIVRRLRAVDQLQKQKPKQSQPSFNTNRNNTRFNSQPQCN
FT                 NVNAVETNFMTSPPPMFHNPPNAPFECVAAPHSEHLNFQGAGASN"
FT   CDS           2449..7146
FT                 /product="Gypsy-28_TrVa-I_2p"
FT                 /note="retropepsin, SGNH_hydrolase, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="VCCGSSFGAFKLPGSWGIQLDSPAXVLYTQYKILDSK
FT                 NIGILEQQFVYIITLNCTQSQINLNILFLGSREIPGLQAELSYSCFDQIDI
FT                 FLIAKVTASSLPSLFSKLSLMKLPRYDAILINPSNYWVLSRLKHSLAPPHL
FT                 GTXRISKKALEEIFSGVFCGSTFSFSDKVDIFFSCFQTDHALNINSSMLEQ
FT                 VNHYFASKIGEKKGISWISYKKCSDQLHPHRSDALCPADLETLLIHPFKLI
FT                 YDRTRADFIVNTLCISDAASPQPNEENFLLFEREMMVAQNPRYKCPFIQCK
FT                 VYDYPTQALLDTGSEISLISSEFFDELKEGCSTKLPTLPISNLTIKGVTGV
FT                 RSKHISLQTYLSIDLNGKSISFPAIIVPGISMSFILGVDFFNKYQAIVDFE
FT                 QKTLELLDGEIKVPFQRFAQEPTSPATHVVAVESGFSIYMFSDSHGRDMVS
FT                 HLKSFLPPNIKVKVNFMPGAPFNKVIDTFQHNLPNFSENDIIIILAGTNNL
FT                 SPAKTIPDIKSEFNLGPLLESKHKIVLIEIFPRFDLKSQTHMSVPINLFLR
FT                 AKLKTNSNIHFIKTSDVLTRKFFSKPGLHLNHKGKAKLANLITEKITEITS
FT                 NVSNPQISPTKSQVMFSQIVELESFSSLVSSEIETPTSTDVHSLVPCSKKQ
FT                 PINVSLVQADPESNITREMIGYKLSTAKLSESERGTLANLIFEFKDIFSNK
FT                 PGCCSTYTAHLRLKDNIPFVKRSYPIPFAKQKAVRAEVESMLGQGIIERSN
FT                 SPYSNPITPVAKPDGNIRLCLDARALNAKLISDAEAPESIDTILATFNNPK
FT                 FMSTLDCTASFLQIPLDRESRDVVSFSFEGKNYRFCRLPYGLNVSMQHFIK
FT                 ASDTVFGPEMSAFLSRFVDDLRVVSASFDKHCQHLALIFSALRRANMTLKF
FT                 AKCLFIQEFLPFLGYIISQHGISKDPKKTRPILEYPTPKNVKSLQSLIGLF
FT                 NFYRKFHLQHSELLTPLLHLLKKNAPWKWTLKEEEAFARIKEVFISDVMLA
FT                 YPNFSQPFYLNTDASLNAVAGELFQIDCEGFRRPLAFHSRVLSQSEKNYTT
FT                 TELELLSVVTCCQKFRQFLLGHETFVLTDHSALTFLQQCVLSSGRLARWSL
FT                 FLQEYDLKFQHVKGVENIAADTLSRYPPEFNELTPGNLEINVYSAKLFSPD
FT                 MQSNLMGRIPELTKNDPKLNLILNKLQQQDSKITELYFLIEDKYLFFKKTP
FT                 DSDPLLCIPQAAETEVVRLTHEFLGHLGSRKVLEYLKFLVIFPKMGYKVRK
FT                 FCAACLDCCQSKARNVKNSHPLVPVLANSNLELVSVDLYGPLPKAFGNKRF
FT                 ILVCLDVFSKYVKYIPLTSATGVVTTRNFVKYFVEPIGTPKTVLSDHGPCF
FT                 RSLIWDTTLKSLGAQPRHTSFYHPQSNPVERYMRTLGNFFRIYCHRQHRKW
FT                 VNHLAFFENCLNNSVNESTGCAPVEVLLGTKPENFLKKFIPFPESTPIDQQ
FT                 SKIVLVQENLQKSATRRKQRHDKTVRTPSFMEGNTILLKSHRLSDALAGEI
FT                 KKFFRLYEGPFLLGRPVGENAFEVIDPNSGDLKGVYNVIHFRPFAEQTWQ"
XX
SQ   Sequence 9052 BP; 2506 A; 2005 C; 1590 G; 2947 T; 4 other;
     actggcgccc aacgtatcag caatgattta aacttaaatt cattaaaaga atctccttat        60
     taaatcttaa aattgtgcga tctaacttcg gtttcggcat gaagtccgcc atcttgctca       120
     tcgtgagtct tgcgcgagcg tggttcgcat tcgcgccttc gcactttgtg atcatcttta       180
     ttagttccta gtattttgtg aattwctatc ctcgtctgat tcaccatgca gttcgcactt       240
     gttcggtaaa taacaccatt ctgtccgtaa ggacatattc cgattttctt catcaggcgt       300
     ctctgtttcg tcagtgtgtg tgtgtgtgtg tcaccgggat cgtgtggttg tgtgagtgtt       360
     caacacctcc gttgacaagt caacagtcaa ctctcaacgt tcaccactat tgatgtttac       420
     gtttacggta ttgcgtttac cctgtgttta cctgacaact tatacaattg tcttcggatg       480
     tatccacggt tttgtgctca gtgcacagtg cacttgccgt gcgctcattc acctacatga       540
     tttcagcgga caatttgttt tgtttttgtt tttatttacc agcactaaaa ttatttccct       600
     tcatgctgct aatttactgt taaccgttaa tgtggttaat tttcaaaatg gtattcgcca       660
     agtgtcttcg gaattttatc cctttactcc gaaacgcctc ggctcaaatt gattggcgtc       720
     ctgtactcat tataatatga aaatgaccaa tctgatcttc accaccaagt atcaatctca       780
     aactgaaatg atggatacaa gatttcaact aattcaatcg gatggaagga agttgtcatt       840
     tggcgacaaa caaagcaaaa tctcatgcgc ggtctcaggg atggatggct gatgtggaag       900
     atgtctctcc taaatttctt tgcaatgaac aagcgtaact catgtatcgg acctggaaca       960
     ataaacctgc tttttcaaca cagctctaac ctcatacttc gatttctttt tcagctctct      1020
     ggattctctt cgttccggga tcgtcactgt ttggtatcgg tatcgttcaa ttttttttta      1080
     atctgcttac tttaaatttc cttttgaatc tgtttacttc aaatttcctc aatctatttt      1140
     gaagattact ttaaatttcc tcaatcaatt ttaaagactt tttgttagga tgagtcataa      1200
     tactcgttat agggatcaga gaaggccagt gatcttccct gagaatgtcc gtaataaagg      1260
     tcaacgttcg gtctcattgg aggaagggcc atattgtcat gtagatcaag ctaactgtgc      1320
     aatgccttgt caggcctctc agcaaccgcc acccccaggt gtcgaagttg acatgagttt      1380
     cttagagggg cagttttctg gtgggtctgc taatgcatct gcgcgggagg tgcgctctat      1440
     ggacttgacg tgtgataatc aatattatgg cccctcgccc aatgaccaaa atgatggtat      1500
     ttctcaaggt acatctaatg ccacccacca agaacctttg gctgttttgg ttaatgaaat      1560
     gaggtctctc tctctcaata tcgatgctaa atttaattct ctgaaagcag aaatacctgc      1620
     cattgtagct tcggaagtaa ataatgtcac ctttaaaatg catgcctctc aggcaaatag      1680
     gcttgaccat ctagaaaatt ctcatgcaac tcctgttaaa tattttgatc gccctcaggt      1740
     ccctgtgagt cagtgctggg atgtggtgtc gcatcacact caaaagcgta agcacccggt      1800
     gaatgttaat ctgaaggatt gtcccgtgtt cagcggtgat ttagagctgt tgcacccggt      1860
     agattttctt gaggaattag ggtatctctt tgattcttac gatctgagcg actctcaaaa      1920
     attaacgtcg gttggtcgac tgctctcagg tgacgcactg gaatggttca aagcttataa      1980
     atcctccttt atcacacttg accaatttaa aattgccttc cttaagtatt tctggggccc      2040
     taatccccaa aacgcacttc gcagggattg cctcaacatt gatcctgaat cagtgaaaag      2100
     caattttgct tctttctttt ttaaacaatt taataaggct aagtacttac aagatgcaat      2160
     tcctgaagat gccttaattt ctactattct tcaaaatttc ccataccacc ttcaagttag      2220
     cctgcttcag tccgaagatc agtctcagga ttccattgtg cggcgcttga gagcagttga      2280
     tcaactccag aaacagaaac ccaagcagtc tcagccttca tttaacacga atagaaataa      2340
     caccaggttc aatagccaac cgcaatgtaa caacgtcaat gctgttgaga cmaattttat      2400
     gacaagtcct ccgccaatgt tccataatcc accaaatgcc ccttttgagt gtgttgcggc      2460
     tcctcattcg gagcatttaa acttccaggg agctggggca tccaattaga ttctccagct      2520
     camgtgctct atactcaata taaaatttta gatagcaaaa acattggaat tttggaacaa      2580
     cagtttgttt acatcatcac tcttaactgt actcaatctc aaattaattt aaatatcttg      2640
     ttcttaggct cacgagagat tccggggctt caagccgaac tttcctattc ctgttttgat      2700
     caaattgata tctttttaat tgctaaggtg actgcgtcct ccctgccaag cctgttcagc      2760
     aagctctcac taatgaagtt acctaggtac gatgccattt taatcaatcc ctccaattat      2820
     tgggttcttt ctcgcctgaa acactctttg gctcctcccc acctcggcac akctagaatt      2880
     tcaaagaaag cccttgaaga aatattttct ggtgtgttct gcggctccac tttctccttc      2940
     tcagacaaag tagatatttt tttcagctgc ttccaaacag atcatgcact gaacataaat      3000
     tcctctatgc tagaacaagt gaaccattat tttgcctcaa aaattggcga gaaaaaagga      3060
     atatcctgga tttcttataa aaaatgttct gaccaactgc accctcaccg tagtgatgca      3120
     ttatgtcccg cagaccttga gacactttta attcatccct tcaaattaat ttatgacagg      3180
     acccgagcag attttattgt caatactctt tgtataagtg atgcagcctc tccgcaacct      3240
     aacgaggaaa attttctgtt gtttgagagg gagatgatgg tggcgcagaa cccccgttat      3300
     aaatgtccat ttattcaatg taaggtctac gattatccaa cgcaagctct attggacact      3360
     ggtagtgaaa tatctctcat aagttcagaa ttctttgatg aattaaaaga aggttgttca      3420
     actaaacttc caactctacc catatctaac ctcactataa agggcgttac cggtgtacga      3480
     tcaaagcaca tctctttgca aacatacctt agtattgacc tgaatggaaa atcaatctcc      3540
     tttccagcaa ttattgtccc tggcatttct atgtctttta ttcttggcgt cgactttttt      3600
     aataagtacc aggccatagt tgatttcgaa caaaagacac tggaactatt ggatggtgaa      3660
     ataaaggtcc ctttccagcg atttgctcaa gaaccaacta gtccggccac ccatgtggtt      3720
     gcggtggaat ccgggtttag tatctatatg ttttcggata gtcacggacg tgacatggtg      3780
     tcgcacttaa aatctttcct tcctccaaac ataaaagtta aagtaaattt tatgccaggt      3840
     gcccctttta ataaggtaat agatacattc caacataact tgccaaattt ttccgaaaat      3900
     gacattatca ttattctggc tggcacaaat aatctttccc ctgctaaaac aattccagat      3960
     attaagagtg agtttaactt aggtcccctt ttagaatcta agcataaaat agttctaatc      4020
     gaaatttttc caaggtttga tttgaaaagc cagacacaca tgtcagtccc gatcaatctg      4080
     ttcctcaggg cgaaattgaa aacaaactca aatattcact tcatcaaaac atcggatgtg      4140
     ttaactagga aattcttttc taagcccggc ctccacctca accacaaggg aaaggctaag      4200
     ttggctaacc taataacaga gaaaattact gaaattactt ccaatgtttc taaccctcaa      4260
     atttcaccaa caaagtctca ggttatgttt tctcaaattg tcgaacttga atcgttttca      4320
     tctctcgttt cttctgaaat agaaacccca acatctactg atgtgcattc tcttgttcct      4380
     tgctcaaaaa agcaacccat taatgtgtcc ttagtacaag cggaccctga atcgaacatt      4440
     actagagaga tgattggcta caaactttca acagcaaaac tctcagaaag tgaaagagga      4500
     acgcttgcaa atttaatttt tgaatttaaa gatatatttt caaataaacc tggctgttgt      4560
     tcgacctaca cagctcatct cagattgaaa gacaatatcc cctttgtaaa acgctcttac      4620
     ccaattccat ttgctaagca aaaggctgtc cgtgccgagg tggagagtat gctaggacaa      4680
     ggtattattg agagatcgaa cagtccttac tctaacccaa ttactcctgt tgctaagccg      4740
     gacggtaaca tccgtctctg cttagatgct agggcgttaa acgccaagct tatctcagat      4800
     gctgaagcgc cagagtctat agataccatt cttgctacct ttaataatcc taaattcatg      4860
     tccacccttg actgtacagc aagcttttta caaatacctc tcgatagaga aagccgtgat      4920
     gtagtgagtt tttcctttga aggaaaaaac tatcgttttt gtcgcttgcc atatggctta      4980
     aatgtctcaa tgcagcattt catcaaagca tcggacacag tgtttggccc tgagatgtca      5040
     gcattccttt cacgtttcgt tgacgattta agagttgtct cagcctcttt cgataaacac      5100
     tgccaacatc tagctttgat attttcagcc ctgcgccgag caaatatgac tctaaagttt      5160
     gccaaatgcc tcttcatcca ggagttctta ccatttctag ggtacattat ttctcaacat      5220
     ggtattagta aagatccaaa gaaaactcgt ccgatattag agtatccaac tccaaagaat      5280
     gtaaaatctc ttcagtctct tattggtctt tttaacttct atagaaaatt tcatctccaa      5340
     cactcggaac ttttaacacc ccttcttcat ttgctcaaga agaacgctcc ctggaaatgg      5400
     actcttaagg aggaagaggc gtttgccaga attaaagaag tatttatctc cgacgtaatg      5460
     ctagcctatc ctaacttttc ccagcccttt tacctaaata ccgacgcatc gttaaatgct      5520
     gtcgcagggg aactatttca aatagactgc gaaggcttta gacggcctct ggcgttccac      5580
     agcagagttt taagtcaaag tgaaaagaat tatacaacaa cagaattgga attattatca      5640
     gttgttacat gttgccaaaa gttccggcaa tttcttttag gtcatgaaac ctttgtgcta      5700
     actgaccatt cggctctcac cttccttcaa caatgcgttc tgtcttcggg acgtctggca      5760
     cgatggtccc ttttcttaca agagtatgac ctaaaattcc aacatgtgaa aggtgtagaa      5820
     aatattgcag cagacactct ctctagatac ccccctgaat tcaatgagtt aaccccagga      5880
     aacttagaaa taaatgttta ttctgcgaaa cttttcagcc ctgacatgca gtccaacctg      5940
     atgggcagaa ttcccgaact caccaaaaac gacccgaaac tgaacttaat cctcaacaaa      6000
     cttcagcagc aagattctaa aattacagaa ctatatttct tgatagagga taaatatctc      6060
     ttctttaaaa aaacaccgga ttcagaccct cttctgtgca ttccgcaagc tgcggaaaca      6120
     gaggttgtta gattaacaca tgagttctta ggacatctcg gttcaagaaa agttctagaa      6180
     tatctaaagt ttttagtaat ttttccaaaa atgggttata aggttcggaa attctgcgca      6240
     gcatgtctgg actgctgtca gagcaaagcg agaaatgtga agaacagtca ccctctggtc      6300
     ccagttctcg caaattccaa tttagagtta gtctctgtag atctttacgg cccattacca      6360
     aaggcctttg gaaacaaacg tttcattctt gtttgtctag atgtattctc caaatatgtc      6420
     aaatatattc ccctcacgag tgcaactgga gtcgtgacaa ctcgaaattt tgtaaaatat      6480
     tttgtggaac cgataggcac cccaaaaact gtgctcagcg atcatgggcc atgcttcagg      6540
     tctcttattt gggacactac ccttaaaagc ttaggagctc aaccgaggca cacttcgttc      6600
     tatcatcccc agagcaatcc cgttgagaga tatatgagaa ccctgggaaa cttcttcaga      6660
     atttattgtc atcgccagca cagaaaatgg gtgaatcatc tagcattttt tgaaaactgt      6720
     ctaaataact ctgtgaatga gtcgactggg tgtgccccgg ttgaggtcct gctgggtacc      6780
     aagcctgaaa attttcttaa aaaattcatt ccttttcctg aaagtacacc aattgaccaa      6840
     cagtcaaaaa tagttttggt ccaggaaaat cttcagaaga gtgcgacacg gcgaaaacaa      6900
     cgccacgaca aaactgttcg taccccgtcc tttatggaag gcaacacaat tctccttaaa      6960
     tctcaccgtc tctcagatgc actcgcgggg gaaattaaaa aattcttccg tctctatgaa      7020
     ggccccttct tgctagggcg tcccgtagga gagaacgcat ttgaggttat tgatccgaac      7080
     tcaggcgatc taaaaggtgt ctataacgtt atccatttca ggccttttgc tgaacagact      7140
     tggcagtgag gtcgtactcc tcggtagcaa ttcttcttta aattatgtct cgtttttaag      7200
     aaccagttaa taatcttttt ttttctcatt tttttttctc cattggggaa gggggttgga      7260
     ttaaatccaa caaccccatc caaaatcaat gtggactatt ccaaataggg tggagcaata      7320
     ttcaaaaaaa atacttggct caaccggcaa atgtaaagcg ttctcttttt gtttgtctct      7380
     caacttgtta attcatttat gtttcttgaa ccaacatttt acattgtttc ggctttaact      7440
     ctgcctatga ttcctgttgt aataattata ctgggccttc catcattagt caactaatag      7500
     ccaggaatcc ccattgtgac ccagatcaga ggatcatgac acagtgcggt agctctctca      7560
     tattttcagc agacccggcg gagtctttct tgttttctct tgtattttaa acagacccgt      7620
     caggtctttc tttttttttc tctcatgtat ttcataatgt gtgtaggaat tgggtgatca      7680
     ctctcagata agtctcagag gagaccccga gagtccacca acctgaatct ggccattcca      7740
     ggttttaaat tccagtcccc tattgtatgc ccaaagcaag gccgcggact aaagctgcaa      7800
     caattcgccg aaattctctc ttaaaaccta ttgtgtcttt tttttttatg acatgccacg      7860
     cagatgaggt aaactctttt ccgagtctta ttttatttat tttgttttgt aatcaacgct      7920
     cagacaaaat gaaaaatttc atgagtctta ttttttatct agatgcgata acgtcaagtc      7980
     tatcttcctt gtcagaccta taggatttac gattgatctc aatatttcaa tatttgagcc      8040
     actacctcat tacaagtgca aacttatctc cccacctgtt agtgaataga atacaagacc      8100
     agatgctttc ctcaactgga aaattttgtg gatctaacgc tccatttaac ctgaatattt      8160
     ctgttgtaga aaaaatactt gtcccctaga gaataatctt attgccttac tcaactaaac      8220
     tccttgggga aatgattcca gggggaactt tctttgacga gtttagtcct tagttttccc      8280
     ttcctttctt ttcaatttct agtctccagt tgaggaaccc aactggtcac taaataaact      8340
     tagcactatg gatccctccg tcaacccctt tttttttttt taccttaaca atctcatttg      8400
     agattattaa aattattttt ccctttgtgt taacgcacct cacgttaatg atattttgtc      8460
     atgtataatc gtactttttt tttctctctc ttcaacaatc tcttttgtaa ttattcacat      8520
     tacgttttga tgtatttcaa ttccatattg ttttcatttt ttggtcttaa tagacaatta      8580
     tttttcccac ggtctctccg tagactgctt aataattttt ttttgtaact catgtacatc      8640
     ttgtcaatta ttttcttttg ccatgttaaa ttgtaccttt ttttttctct ctcttcaaca      8700
     atctcttctg tgattgttca ctttatggtt gatgtatctc aattccatat tgttttcatt      8760
     tttggtctta atagacaatt atttttctta cggtctctcc gtagactgct taaagaaact      8820
     ttaagtttcc atctttttgt tgatcttatt tgttgatctt atttgtttgt gtacataaaa      8880
     atttttttct atgccaaatt gaataaacgg caatcttcgc tggggtcgct gtgaactctc      8940
     cgtctaactt gtaattaaca attctcgctc attttttttc tctctccaat tggggattca      9000
     atcttctgag ccttaatcct tctgatttag gtacagatga ctggggggtt gt              9052
//
ID   Gypsy-28_TrVa-LTR repbase;    DNA;    INV; 453 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-28_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-453
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 332-332 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 453 BP; 92 A; 121 C; 107 G; 133 T; 0 other;
     tgtaacggtt cgttaccggg cctccctaca agtgtgcctt ccgtcctctc tagcttgagt        60
     gcctctatcc gtcaagcgag ccttgccgga tggtggcgct gccgctaggt gagggcggga       120
     actactcttg aagggaggcc cccctctata accatattcc tctctcgtgg atgtaacttc       180
     gctatagagt cgtgttgcgc cgtcgatctc attctaattc taaataatgt aagtgaagtt       240
     taaatcaccc ctatggggtg aaattccttt ttattaccct gacggagggc ttatagcggc       300
     ctccgcgccg atctattttt ccctaaaaaa tgtgttaaag tttatttatg tttcagctgg       360
     ggcaggcctc gtggtctgtt cccagtgaag ggccgcgagg cctcctccac aaccttaact       420
     tataattctg attcggaaac cccgaccgtt tca                                    453
//
ID   Gypsy-29-I_NVi repbase;    DNA;    INV; 5327 BP.
XX
AC   .
XX
DT   12-MAY-2009 (Rel. 14.05, Created)
DT   12-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-29-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5327
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 994-994 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           782..1957
FT                 /product="Gypsy-29-I_NVi_1p"
FT                 /translation="CCAPRRASAPTIARVPLAPLPPRVSREGATRHPSAVR
FT                 RAHSVPRLGSRTSQRLAARRALNFXHSETTLRKPGQSSVGPQSXXXGANXS
FT                 XXXPXPPPMPXXGVLPXPRPSXEXTRCEXPSYWXANPALWLAQVDAALEAS
FT                 GVRSXRHKFNMVVARLPQDVAQELSDIILHPPAANRYXALRVAXLQRLXIS
FT                 ADTQLHQVLNEVRLEDRTPSQLLRHMRRLANNAISDEAMRVKWLDLLPSNT
FT                 SRLCRVLPATSLDELAHLADLAMVPEPQVHAVAARQPTPSSSGVSSGTASP
FT                 QPESDMATLQATLAQLLTTSQRQSKLLETLVRNNTSNNXSNNISNSSSNSR
FT                 GRARSRSRPRRTAAPAAASDDMCWYHRKFGQQATQCKQPCSFTPGPGN*"
FT   CDS           1816..5325
FT                 /product="Gypsy-29-I_NVi_2p"
FT                 /translation="SALSLTPPSYRSASGRQRRHVLVSPEIRPAGHTXQAA
FT                 LLLHPGPGKLKAPPPLQAEAVGAVTERRLHITDQSTKLRFLVDTGSAVSLL
FT                 PLTHFKETRRRSPLTLSAANASAIGTYGTHSLTLDLALAKPLNWKFIVAAD
FT                 VSDPILGADFLAHFGLAVDLHHRQLLDADHSHHTTGALLPARVFSVAVNIT
FT                 ADVAEGVFADLLRDYQDLATPGSTTISLPDLSALHHIVTNGPPAAARPRRL
FT                 HGERLEAARAGFRALLEMGIVRLSDSSWASPLQLVKKADGSYRITGDYRQL
FT                 NSRTVPDRYPLPVIEDLLLELQGDTFSVIDLKKAFYQVPIAPEDAHKTAIT
FT                 TPFGLFEFTRSSMGLRNAAQSLQRAMDHLLRDLPFARAYLDDIVVASWGRE
FT                 QHLEHLKVLFATLRKARIKINQDKCVLAKESVTYLGYRISKDGCSPPPGKV
FT                 EAIQAFPQPADTSQLRRFLGLVNYYRRCIPGAARLLAPLNDLLKLLPQCKK
FT                 PSPLAWTKEAQDAFEKTKQALADAVTTTFLRREAPLRLYTDASDVAIGAAL
FT                 EQXEREDIWRPLGFFSRKLSDTERRYSTYDRELLAAFASVKHFSSILEGRP
FT                 FTLFTDHKPLSLAAQQPPEKASPRQSRQLDYIFQFPIKLAYVKGPNNIAAD
FT                 ALQMPFRESTPSRCRLAWTSPPSPSSKRATKTCRTCSTPETENFSPSTSRV
FT                 PPCIAQVXEKXXXRYIPKELRKTVFEALHGLSHPGVRSTTRTIAQKYFWPH
FT                 MRKEIARWARACEPCQHSKVHRHNRAALGDFAAPDARFDHLHLDLIKLPSC
FT                 SGXQYCLTIVDRFSRWPHAIPLPDQQADTVARAFLEHWISSFGTPLTITTD
FT                 QGPQFEARLFAALANIIGAARVHTTPYHPQANGLVERMHRTLKAALMCCAP
FT                 TPWPQALPAVLLGLRTTFKEDLQASPAEMLFGTTLRVPGDFFVSASHPDAN
FT                 APAFVAELRGLIGRLRAAPGSRHLPPRTPFFHGDLRTCTHVFRRVDTVRTT
FT                 LQPPYTGPHRVLRRLDDQRYVVEVNGEAKTLSTSSLKPAYLEVADQPPTNA
FT                 PLPARASPAAAAPAPPPAAPSAQAAPPAAPSAQAATPSAPEARPLAQGPPA
FT                 GPSTQAHPAPTPSTQPQPPVSPPVPAPSTSPPPPPSASPSLNRPRKTVSFR
FT                 TQDTSGTGGGV"
XX
SQ   Sequence 5327 BP; 1024 A; 1941 C; 1406 G; 907 T; 49 other;
     tactctcggc ggccagccca tccttctctc tcggcgtacc gcgcggagcc gagaaagaat        60
     tttttttact gattcgactt acggcacgtc gcagcccatt tacagctcgc ggcggccact       120
     tttatttttc tttacttctt gcatcgagca gcgagcgcag tcgcgcgcgg tggcacgcgc       180
     gaccccggtg aatctcgccg ccggtgaagt gaccctcaat cgagcaccgt agcaacatca       240
     ggcgagcacc agcggcacct cgtcgcacgg cactaccagc agcagggagt ctgcctccag       300
     cccctctaca gctggagtgc gcgcggagcg gccccgtcgg tcgtctccct gcctgcgagc       360
     acaccacgcg gcgagagcag ccgcaccacc gaggacgagg cacagcacca gaacatcgcg       420
     gtgacacgca ccaacgcagc cggggtccca gccaggaggt gccttcaaca tcggcggaac       480
     aacaccggcc gagcaacgca gtccagcagc agcgcggcgt ccacatctcg ccatcatcat       540
     cggcagcgct cggcggccag cgtcaccttc acaccaggtt tttwtacgct ccgcaacagg       600
     tatagttctt tcgcggcctt gagtcgctct ttcttttcaa gtgccgcgct atacctgttg       660
     cgtgccgccg gcgccgacgc cgcgctccac gcagtcggcc atcttgccga ctcgcgtcgt       720
     ctcccgcgct ttctcgcctt ccgccccggc cctcccgcgc gagcggccat tttcccggta       780
     gtgttgcgcg ccgcgtagag ccagcgcgcc gaccatcgcg cgcgttccgc tggctccgct       840
     accaccacgc gtgtcgcgcg agggcgccac ccgccatcct tcggcggtac gccgcgcaca       900
     cagcgtgccg cgtctcggtt ctcgtacttc tcagcgcctt gccgcgcgcc gcgcgctcaa       960
     ttttttwcac tccgagacaa cgctgcgcaa accgggccag tcctccgtgg ggcctcagag      1020
     cwcgcmrrck ggmgcgaatg rttcggrcts yrtaccasct cctccgccca tgccmrccgr      1080
     cggggtrttg ccgtwtcckc gaccgtctwm cgarkycacg cgctgcgagw twccatcata      1140
     ytggartgct aatcccgctt tgtggctcgc acaggtcgat gcagckctcg aggccagcgg      1200
     agtacgcagc gakcgccaca aattcaacat ggtggtggct cgcctyccyc aggacgtcgc      1260
     ccaggagctg tcggacatca tcttgcatcc gccagccgcc aaccgctack grgccctccg      1320
     agtcgcgstg ctgcagcgcc tgkccatctc cgctgacacc cagcttcacc aggtgctgaa      1380
     cgaggtgcgc ctggaggacc gcacaccatc gcagctgctg cgccacatga ggcgcctcgc      1440
     caacaacgcc atctccgacg aggccatgag ggtcaaatgg ctggacctcc tgccatcgaa      1500
     caccagccgt ctgtgccgag tcctgccagc cacctcactc gacgagctgg cccacctggc      1560
     tgacctcgcc atggttccag agccgcaagt ccacgctgtc gcagctcgcc aaccaacacc      1620
     gtcctcgagt ggcgtttcgt caggcacggc atcgccccag ccagaatcgg acatggccac      1680
     gctgcaggct acgctggcgc agctcctcac cacctcgcag aggcagagca agctgctcga      1740
     gaccctcgtg cgcaacaaca ccagcaacaa camcagcaay aacatcagca atagcagcag      1800
     caacagcaga ggtagagcgc gctctcgctc acgcccccgt cgtaccgcag cgccagcggc      1860
     cgccagcgac gacatgtgct ggtatcaccg gaaattcggc cagcaggcca cacartgcaa      1920
     gcagccctgc tccttcaccc cgggcccggg aaactaaagg cgccgccgcc cctgcaagcc      1980
     gaagcggtag gcgcagtcac ggagagacgc ttgcacatca ccgaccagtc aacaaagctc      2040
     aggttcctgg tggacaccgg ctcggccgtc tcactgctgc ctctcacaca cttcaaggag      2100
     acgagaagac gtagccctct caccctcagt gcagccaacg cctcagcgat tggtacctac      2160
     ggcactcact cgctgacgct ggacctcgct ctggccaaac cactcaactg gaagttcatc      2220
     gtagccgcag atgtcagtga tcccatccta ggcgcggatt ttctggcaca tttcggcctc      2280
     gctgtcgacc tccatcacag acagctcctc gatgctgacc actcacacca taccaccggt      2340
     gcactccttc cagctcgagt cttctccgtc gcagtcaaca tcacggccga cgtcgctgag      2400
     ggtgtgtttg ctgacctgtt gagagactat caagatctag ctactccagg cagcaccacc      2460
     atctcactac cggatctctc cgccctccac cacatcgtga cgaacggacc accagctgca      2520
     gcacggccac gccggctcca cggggagcgc ctcgaggcgg cgcgtgccgg atttcgagcg      2580
     cttttggaga tgggcatcgt ccgattatca gacagctcct gggcgagccc tctacagctg      2640
     gtcaagaaag ccgatggctc ataccgcatc acgggcgact atcgccagct caacagtcgc      2700
     accgtcccgg acagataccc gctcccagtt atagaggatc ttttactgga actacaaggc      2760
     gacaccttct cggtcataga cttgaagaag gccttttatc aagtccctat cgctcccgaa      2820
     gacgctcaca agacggcaat tacaaccccc tttgggctct tcgaattcac ccgctcttcg      2880
     atggggctcc gcaacgctgc acaatctctc caacgcgcaa tggatcatct tctgcgcgac      2940
     ctgccgttcg cacgagcata tctggacgac atagtcgttg catcctgggg ccgagagcag      3000
     catttggagc acctcaaggt cctcttcgcc acgctacgca aggcacgcat caagatcaat      3060
     caggacaagt gcgtcctggc caaggagtca gtcacctatc tcgggtaccg catctctaaa      3120
     gatggctgta gtccaccacc aggcaaggtc gaggcaatcc aggcttttcc gcagccggct      3180
     gacacttcac aacttcgtcg tttcttgggg ctggtcaact actacaggcg atgcatccct      3240
     ggagctgcac gcctcctcgc acccctcaac gatctgctga agctcttgcc gcagtgcaag      3300
     aaaccgtcgc ctctcgcctg gacgaaggaa gctcaagatg cattcgagaa gacgaagcag      3360
     gcgctcgctg acgcagtcac caccaccttt ctgcgtcgcg aggcccctct acggctctac      3420
     accgacgcct ccgacgtcgc catcggtgct gccctggagc agyacgagag ggaagacatc      3480
     tggcgcccgc taggcttctt ttccagaaag ctctcggaca ccgagaggcg ctacagcacc      3540
     tacgatagag agcttctcgc cgcattcgcc tcggttaagc acttcagcag catcctcgag      3600
     gggcgccctt tcaccctgtt cacggaccac aagccgctgt ccctcgcagc tcagcagcct      3660
     ccggaaaaag catcgcctcg ccagtccaga cagctggact acatattcca gttcccgatc      3720
     aagctggcgt acgtcaaggg ccccaacaac atcgccgcag acgccttgca gatgccyttt      3780
     cgagagtcaa caccatcaag atgccggctt gcctggacct caccaccctc gcccagcagc      3840
     aagcgagcga ccaagacctg ccgcacttgc tcgacgccgg agacggaaaa cttcagcccc      3900
     tcaacatcga gggttcctcc ctgtattgcg caggtgrcgg aaaagktawt msgccggtac      3960
     atccccaagg agctgaggaa gaccgtcttc gaggcactgc atgggctctc ccacccaggc      4020
     gtccgttcca cgacgaggac gatcgcccag aaatacttct ggccacacat gcggaaggag      4080
     attgcgcgct gggcgcgcgc ttgcgagcca tgccagcact ccaaggtcca ccggcacaac      4140
     cgagcagctc tgggagactt cgcggccccg gatgcgcgtt tcgaccacct gcacctggac      4200
     ctyatcaagc tcccgtcgtg ctcgggtttm cagtactgcc tcaccattgt cgacaggttc      4260
     tccaggtggc cgcacgccat ccctcttccg gaccagcagg cagacacggt cgcgcgagcc      4320
     ttcctcgagc actggatcag ctcgttcggg acgccgctca ccatcaccac ggaccagggc      4380
     ccgcaattcg aggcgcgcct tttcgccgcc ctcgccaaca tcatcggcgc agcccgggtg      4440
     cacacaacac cttaccaccc gcaggccaat gggctggtgg aaaggatgca tcgcactctc      4500
     aaggcggccc tcatgtgctg cgcaccaaca ccgtggccgc aggcccttcc agccgtcctg      4560
     ctgggcctca gaacgacctt caaagaggat cttcaggctt ctccggccga gatgctcttc      4620
     ggcacaactc tccgagtccc aggagacttc tttgtttcag ctagtcatcc agacgcgaac      4680
     gcgccggctt tcgtcgccga gttgcgtggc ctcatcggcc ggttgcgggc agccccaggg      4740
     tccaggcacc ttccgcctcg cacgccgttc ttccacggcg acttgcgcac ctgcacgcac      4800
     gtcttcagga gggtcgacac ggtccgcacg acgctgcagc cgccctacac ggggccacac      4860
     agggtgctgc gacgcctcga cgaccagcga tacgtggtcg aggtgaacgg cgaggccaag      4920
     accctctcga ccagctccct caagccggcg tacctggagg tagccgatca gccgcctacc      4980
     aacgccccgc tccctgcgcg ggcctcacca gctgcagcgg ctccggctcc tccacctgcc      5040
     gcgccatcgg cgcaggcagc tccaccagcc gcgccatcgg cgcaggcagc aacaccatca      5100
     gcgcccgagg cacggccact cgcacagggt cctccagctg ggccatccac gcaggcgcat      5160
     ccagcgccca cgccgtccac ccagccgcaa ccacctgtgt cgccgcctgt cccggcgcct      5220
     tcaacatcgc cgccgccgcc gccctccgcc agtccatccc tcaacaggcc aaggaaaacg      5280
     gtgtcgttcc ggacgcagga cacgtccggc actggcgggg gagtagc                    5327
//
ID   Gypsy-29-LTR_NVi repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   12-MAY-2009 (Rel. 14.05, Created)
DT   12-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-409
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 995-995 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 409 BP; 87 A; 126 C; 109 G; 87 T; 0 other;
     tgtggcgcca cgcactggac agcgtcggcg ccagcgtaag cagacgctgc agccgaggcc        60
     tgacttcgac tagcggagta ccgccggagt cagcctcaag atgtcgtccg cccgacgcca       120
     cgctgtggcc agcggggagc acgtacccgg tcgccattct ggaactggcc gccagactga       180
     gcacacgctc aattttcttc agtattacta gttaaaataa agtcttcaga gttgagtaat       240
     agtacatcgg agtgtgaatc ttttcctcct gtaccctcct gtgcccacgc gactcgcgtt       300
     cgtcagtgat acagttaaat tctaaagtgg tgaccccgtt cagcagcacg cttcggagtc       360
     gggcacagcg cgaagaaccg acgccatctt cgccgcgtca tctcactct                   409
//
ID   Gypsy-290_AA-I repbase;    DNA;    INV; 5876 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-290_AA_;
KW   Gypsy-290_AA-LTR; Gypsy-290_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5876
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2682-2682 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4331-4807] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..2029
FT                 /product="Gypsy-290_AA-I_1p"
FT                 /translation="MDLDFEVQYKSLMVHHLEKQEIEHELAIRAVQFDPTE
FT                 SRSAIQRRLRDRLKEEKEMNTVDIDFLRSKVTVDAEIKMIDANVDQIRGYL
FT                 ENEVRFEGFKDSLKSRLVHYFARIRRALEYAETDEDLNDLDKLLRAVRGLV
FT                 NTHFSIFSPIQTVRSEMMQEIVRSVSNLRTGLDDEKNPSKKGGKESQKVSK
FT                 NVDRSDLRTSEDESDDPLTAQGASGMAKHSNRRELKSDRQTSKTNLEQLSG
FT                 LLAALFPFGFPQNPNERPRQDVSSDTNRSEKVIRKFALDRRSKSKPIPPAE
FT                 TSDSVVESDQESSTALSDPPVPNRYKNRNHRVALKNRPVSEWNIRYDGKDS
FT                 GQNLMKFIKEVEFYAKSENVSKRELFRSAIYLFKDQAKSWFMSGVENEDFT
FT                 NWNELKSELKREFLSPDHDHVTEIKAISRKQGPKERFSDYYMEMQNIFNSL
FT                 TKPISEGKKFEIINRNLRSDYKGHAVASNIDNLADLKRFGRQLDATFWYKY
FT                 ANSNNNEQNTSRNKTQVNELTRNPEKKSKHQSEDSKKSYKSRNFYRSQKEC
FT                 SDEEQPSTKSSRENPGNVKPKPKTPDHPKDSQSWVDRYVPPTAGICFNCRG
FT                 QGHHYSECNRPRCKFCLRCGLPDVETKNCPYCAKNFK"
FT   CDS           2393..5191
FT                 /product="Gypsy-290_AA-I_2p"
FT                 /translation="MNFNGQTKLIAALVVPALKRRLLLGTDFWNAFGIVPT
FT                 IPKVAVEELEASPEEPPLTNDQLGELDIVKDLFKVAIEGKLDTTPLISHRI
FT                 ELTEEVKNSPPVRINPFPTSPKRQEQINQELDNMLEAGIIERSYSNWALRL
FT                 VPVDKPDGTVRLCLDARKLNERTLRDSYPLPHADRILSRVGPCKYISTIDL
FT                 SKAFLQIPLHPKSKKFTAFSVLGRGLFQFTRMPFGLVNSPATLSRLMDRVL
FT                 GAGELEPKVFVYLDDIIVLSETFEEHLTLLRDVASRLSRANLSINIQKSKF
FT                 CVTELPYLGYILTNKGLKPNPDRVEAIINIERPTTIRALRRFLGMCNYYRR
FT                 FIANYSEVVRALTDLLKDKPKSIRWNDSAEKSFVEIKELLISAPLLANPDF
FT                 NKPFSIHCDASDTAIAGVLTQDLEGVEQPIAYFSQKLTSPEQRYFATEKEA
FT                 LAVLKSVEKFRCYVEGSKFTVITDASALTYILRSSWRTSSRLCRWSIELQR
FT                 HDMIIKHRRGIDNVVPDTLSRSVEVLVLNRQNQDWYTKMIGKVNDEPEKYK
FT                 DFRVENGVLKKFVSTQGEALDYHFEWKICVPKEMRENILVEEHDDALHLGT
FT                 DKTIAKVKKKYYWPNIGDDVRAHIRKCSVCHESKPSNRSQNPMVGSPRLAT
FT                 KPFQIIAVDFIQSLPRSKSGKAHLLVILDLFSKFCLLFPVRKITAPQVCDI
FT                 LENCWFRRYSTPECLISDNASTFLSSNFKELLQKFQVQHWTNPRHHSQANP
FT                 VERLNRTINACIRSYARTNQQLWDTRVPEIEYALNNTPHGATGFTPYRVLF
FT                 GHEIVSRGDEHRVDRDTETLSDGERIEKKLQIDQFIHELVHKNLKKQFDKN
FT                 SQNYNLRHKTFSPVYTVGQKVYKRNFRQSSAVHKYNAKLGPCYLPCTVIAR
FT                 VGTSAYELADEKGNSIGVFSAADLKPVET"
XX
SQ   Sequence 5876 BP; 1798 A; 1308 C; 1257 G; 1512 T; 1 other;
     aattggcgcc caacaaaaaa atcgatcaag cgatcaaatc tttcacccct ccccctatca        60
     gtgggaagaa aacaggttct gttttggtaa attcgtcctt caaacgaaac agtttttgag       120
     caacatggat ttagattttg aagtgcagta caaaagtttg atggtacatc atttagagaa       180
     gcaggagatt gaacatgagt tggctatcag agcagtgcaa tttgatccga ccgagtccag       240
     atctgccatt cagagacggc tcagggatcg tctcaaagaa gaaaaagaga tgaatacggt       300
     tgatattgac tttctcagat ctaaagttac agttgatgca gaaatcaaga tgattgacgc       360
     aaatgtggac caaattcgtg gatatctgga aaatgaagtg cgatttgaag gttttaaaga       420
     cagtttgaaa tcgcggcttg tccattactt tgcccgaatt cgccgtgctc tagaatacgc       480
     ggagacggac gaagatctta acgatttaga caaactcctc agagcagtaa ggggtttagt       540
     gaatactcac ttttcgattt tctctcctat tcagacggtt agaagcgaaa tgatgcaaga       600
     aattgtccgc tccgtctcaa atttgaggac tggactagat gatgagaaaa atccttccaa       660
     aaaaggaggt aaggagagcc agaaggtctc caagaacgta gatcgaagtg atttaagaac       720
     atctgaggat gagagcgatg atccattaac agctcagggt gcgtcaggga tggctaaaca       780
     ttcaaatcgt cgcgaactaa aatcggatag acaaacgtct aaaacgaact tagaacaact       840
     ctcgggactg ctcgccgcgt tgttcccatt cggatttccg cagaatccta atgagagacc       900
     tcgtcaagat gtcagctcgg atacgaaccg ttcagaaaag gttattcgca aattcgcatt       960
     agacagaagg tcgaagtcaa agccaattcc tccagctgag acatcggatt cagttgtaga      1020
     atccgatcag gaaagttcta ccgcgttgtc agatcctccg gttccaaatc gctacaaaaa      1080
     tcgaaatcat cgtgtcgcgc tgaagaatag gcccgtttcc gagtggaata tccggtacga      1140
     tggcaaggat agtggccaaa acctaatgaa attcattaaa gaagtcgagt tttacgccaa      1200
     atcggaaaac gtgtctaaac gtgaattatt tcggtccgcg atctaccttt tcaaagacca      1260
     ggccaagtcg tggttcatgt ctggggtaga gaacgaagat ttcacgaact ggaacgagct      1320
     aaaatcggaa ctcaaacgtg agtttcttag tcccgatcac gatcacgtga ccgagattaa      1380
     agcgatttcg cgaaaacaag gtccaaaaga acggttttcg gactattaca tggaaatgca      1440
     aaacattttc aattccctca cgaaaccgat ttcggaaggg aagaaattcg aaatcatcaa      1500
     tcgaaacctt cggtcggact acaaaggtca cgcagtcgcc tcaaatatcg ataatctagc      1560
     ggatttaaag agatttggaa ggcagctaga tgcaaccttc tggtataaat acgccaactc      1620
     gaacaataac gaacagaaca cgtcgcggaa caaaacccag gtgaacgaac ttactcgtaa      1680
     tcctgagaag aagtctaagc atcagagcga agactcgaag aaatcgtaca aatctcgaaa      1740
     cttctatcgt tcacagaagg aatgctctga tgaagagcaa ccctctacaa aatcgtcgcg      1800
     cgaaaacccg ggaaatgtaa agccaaaacc gaagacacct gatcacccta aagattcaca      1860
     atcgtgggtt gacagatatg ttcctcccac agccggaatt tgtttcaatt gccgaggtca      1920
     aggtcatcat tattcggagt gtaatcgacc aaggtgcaaa ttttgtctca ggtgtggttt      1980
     gcctgacgtt gaaaccaaaa actgtcccta ttgcgcaaaa aacttcaagt agacctgaga      2040
     gggcaggtca gtcaaacttg tacgcaaatt ccctcttcta gcgattgtca agattctctt      2100
     ttccatttcg gctacagccg agttcaatcc accgactatg attcgccaac agcagctcgc      2160
     ctggaagagt tattcgttcg agtggaggac gacgaccgtc catttgtcaa ggtgtctgtg      2220
     ctcggtattc ccatcatcgc attactcgat agcggagcac accgaagcat tctaggcaca      2280
     ggatctttaa agctcataaa gacctgcaag ctaaaaattt tttccagcaa atgttgacct      2340
     ggttacggcc agtggacaga aattggatgt gacgggatac gtgaatctcc ctatgaactt      2400
     caatggacaa acaaaactta tcgctgcatt ggtagtccca gccctgaaac gacgcctgct      2460
     tttaggcacc gatttttgga acgcttttgg aatcgtacct accattccga aagtggctgt      2520
     ggaagaacta gaagctagcc cagaagagcc acctctgaca aatgaccagc tcggtgagtt      2580
     agatatagtc aaagacctgt tcaaagtagc tattgaagga aaattagaca caacaccgct      2640
     aataagccat cgcattgaat taaccgagga agtcaaaaac tctcctccgg tgcgcataaa      2700
     ccccttcccc acctctccaa aacgacagga gcaaattaac caagaactgg acaatatgct      2760
     cgaagcggga ataatcgagc gatcatacag taactgggct ctaaggttag tccctgtgga      2820
     caaacccgat gggacagtac gtttgtgtct cgacgctcga aaattaaacg agaggacctt      2880
     acgagattct tatccactgc cccacgcaga tagaattctc agcagagtgg gaccatgcaa      2940
     atatatttcn acaatcgatt tgtcgaaagc ctttttgcaa atccccttac acccgaaatc      3000
     taagaaattc acggcgtttt ccgttctagg tcgagggctg ttccagttca ctcgtatgcc      3060
     attcggattg gtcaatagcc cagcaacgct atcccggctt atggaccgag tcctgggtgc      3120
     gggtgaactt gaacctaaag tcttcgtgta cttagacgat ataatcgtcc tgagtgaaac      3180
     gtttgaggaa cacctcacgt tgctcagaga tgtcgccagt cgactgagta gagcgaattt      3240
     atcgatcaat atacagaaat ctaaattttg tgttaccgag cttccttatt tagggtatat      3300
     attgactaac aagggcctaa aacctaatcc agaccgagtg gaagcgatca ttaatatcga      3360
     acgccctacc accatccgag ccttaagacg gtttttgggt atgtgtaatt actaccgtcg      3420
     ttttatagcc aactatagcg aggtagtacg ggcacttaca gacttgctga aggataagcc      3480
     caagtcgatt cgttggaacg attcagcgga aaagtccttt gtggagatta aagaactgct      3540
     tataagtgcc ccgcttcttg ccaaccctga cttcaacaaa ccctttagta tccattgcga      3600
     tgcaagtgac acggccatcg ccggagtctt aacacaagat ttggaaggcg ttgaacaacc      3660
     cattgcctat ttctcgcaga aattaacaag ccccgagcaa cgatactttg ccacggagaa      3720
     ggaggcccta gctgtcctga agtccgttga aaaatttaga tgctacgttg aaggatcgaa      3780
     gttcacggtt attaccgatg cttctgccct cacatacatt ctaagaagta gttggcgtac      3840
     ctcttcacgt ttgtgtcgat ggagcataga actacaacgg catgacatga ttatcaagca      3900
     tcgccgcggt atcgacaacg tggtgcctga taccctgtca cgatccgtgg aagtcctagt      3960
     gctaaatcga caaaaccagg attggtacac gaaaatgatc ggcaaggtaa acgatgagcc      4020
     tgaaaaatat aaggattttc gggtagagaa tggtgttctc aagaaatttg tatccacaca      4080
     aggagaggct ttagattacc attttgagtg gaaaatctgt gttccaaaag aaatgcgaga      4140
     aaacatactg gtcgaagagc atgatgatgc acttcatcta gggaccgaca aaaccattgc      4200
     taaagtgaag aaaaagtatt attggccgaa cataggagac gatgtgcggg cacatatccg      4260
     caaatgttcg gtgtgtcacg aaagtaaacc ttccaatcgg tcacaaaatc cgatggttgg      4320
     ttctcccaga ctggccacca aacccttcca gatcattgcc gtagatttta tccaatcctt      4380
     acccaggagc aaatcaggga aggctcattt actagtcata ttggatctct tttcgaagtt      4440
     ttgcttgctc tttccggtac gaaagataac agctccccaa gtctgtgata ttctggaaaa      4500
     ctgctggttt cggcggtatt ctactccaga gtgcctcata tccgacaacg catcaacttt      4560
     tctgtcgtct aatttcaaag agctcttgca aaagttccag gtgcaacact ggacaaaccc      4620
     tcgacaccat agccaagcta atccggtgga gcgtctcaat cgcaccatca atgcgtgtat      4680
     acgatcttat gctaggacta atcaacaact atgggacact agggtacctg aaattgagta      4740
     cgctcttaac aatactcccc atggagccac cggatttact ccgtatcgtg tactatttgg      4800
     tcacgaaatt gtgagccggg gagatgagca tcgggtcgac cgagacaccg agaccctttc      4860
     ggatggtgaa agaattgaaa agaagcttca aattgaccag tttattcacg aacttgttca      4920
     caaaaacctg aaaaaacaat tcgataagaa ttcacaaaat tacaacttgc gtcataaaac      4980
     attctcacct gtttacactg ttggccaaaa agtttacaaa cgaaactttc gtcaatcgtc      5040
     agcagttcac aaatataacg ccaagttagg tccatgctat cttccttgca ccgtgatagc      5100
     tcgtgtggga acctctgctt acgagctggc agatgaaaag gggaattcaa ttggagtttt      5160
     ctctgctgca gatttgaaac ccgttgaaac ctgaaaagaa aacaaatgca ctcattaact      5220
     taacatttta cgatacgtat cgagaaaaac ttccttctgt ttagttgcgg ccgaagctga      5280
     acatcctcca gttacacctg taacaaaatc aattaattag tctctgcaat caaaagccaa      5340
     ctcctttcga tcaatgattt caatttcgta gattacttac ctttgtaaac aacgaatagc      5400
     ttccttctct gtgtgttcct ccatgcaggc tgtaaaacaa aatataaaca ttggtaccat      5460
     aactgacaat tagagcagct cctgttagtc gcgcgcaata acagacggaa caaacaggga      5520
     atgaaaacat tcactagtta gctataattt ttcactacgt accaacagta attttcacta      5580
     ttttcacgat tgtctgcact ttcactttct caattcaatt cgtgttttgt tttgctcact      5640
     tattcagttt gacagttctt gtgcttttgt attggtgaaa gactccataa cgctatcctt      5700
     ccttcaaatg ggaaagagta acgcgttggc agtgttgccg atttcatgta tgcgacataa      5760
     tttactttgt acattcaaaa taaatattat gttgattatt tcattgtatt gttaaacccc      5820
     atgcttagta aaaatgaatg tttccattca tttttttact gggatggagg ggtatt          5876
//
ID   Gypsy-290_AA-LTR repbase;    DNA;    INV; 1545 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-290_AA_;
KW   Gypsy-290_AA-I; Gypsy-290_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1545
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2683-2683 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1545 BP; 422 A; 412 C; 319 G; 392 T; 0 other;
     tgtaaccgta ggtcccaatt tgcagcttgt tggcgctgcc acaatttccc caggtctgtc        60
     cgaacctgcc agtaagcccc tatatccaat tccaactctc ccaaaaacat atggacagcc       120
     ttactggcac ggtaaaccta gctgtccatg cttaaaaaga tccgacaacg tcatttcctc       180
     aattagcata tgtaacaatc tttctaactg gtattttctg acagtggttt gagtaagtcc       240
     gacaaccgtt acgagttgtg tcggcccaat tgctaccctg cgcagaatgg ttgacaatcc       300
     gacgaagtgt caaacttcgg cacttcgtca tcgttcttat tggatcgagt ggtggtaata       360
     taagacgaat caaggggatt cgtccttctt tgccgtttga cttttgaaga aaatagtagt       420
     gcgcgccgta aagtgtccta gctaaaaaag tttgccctaa attacgatta gtatcgaatg       480
     ttagtagtcc aaattagtgg tataaaagtg ttagtacgtt gcgaacgagc agttagacac       540
     gaaaacgaac gtctataacg attaccaact tataacaaag aaaagtgaag ccaaaggacc       600
     agtttggagt gtaggaaagt tggttggtgt gccgataacc agcttagttc cgcccgccat       660
     cttggagcgt ccgttccaac aatagcatcg acgccatttt gaaatttcgg ccattgcaac       720
     atctttacgg cttccttacc gctttcaacg ttcggtcagt cggattaaga ccaatcccga       780
     caaggaaccc gaacgaaaga agcccagctg gtgggccaca gtccgtccag caaccctaca       840
     ttgccacaat ccgtccaaca accctacatt tccacaccgg caagaaacag attcgaaaga       900
     agcccagctg gtgggcccta gtccattcag caatcacgga atccagtcga tgaaggccat       960
     gctggtgggc catagtccgt tcagcagcca tctctgggaa agagcttaac gccctcggtc      1020
     gaggaccgaa taccgaccct ctttcgcccg ttttctcgcc aacaacccgc ccaattcgcc      1080
     gacatccagc caagctagcc accgttcatc accatcaagc ctcgccaaca acccacccaa      1140
     aagcgcaagt accatgtaac cgtctctcca ccataccaat atgcccggat tgggtgaata      1200
     aatctagtaa tgtaagctaa attggcgagt aggattattt agccaccgca ctccctataa      1260
     acttttatat acacctctct ttcctcgctt ttcgtaccca aaaggggttc ccaagcctca      1320
     ttctctttag tctgctataa aagttgacct tcccttcgat tcatttccgc tttggtcctt      1380
     tgagtggatt attatctatt cagctgtcag tgtgcttcag ttaagctccc actgaaggta      1440
     agtgactggt gaagcagggg ttgaaacgat gctaattgag taaacgaccc agtgctcgac      1500
     aaaattcata cccattattc cctactgagc agccgagagg ctaca                      1545
//
ID   Gypsy-291_AA-I repbase;    DNA;    INV; 5432 BP.
XX
AC   .
XX
DT   21-FEB-2012 (Rel. 17.12, Created)
DT   06-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-291_AA_;
KW   Gypsy-291_AA-LTR; Gypsy-291_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5432
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5432
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2684-2684 (2012).
XX
RN   [3]
RP   1-5432
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..1480
FT                 /product="Gypsy-291_AA-I_1p"
FT                 /translation="MEELIALKTELVLARAERDQLLREKEIGDKGIDLSSP
FT                 SEDSNDHPKSENESLMVTMNHMSLGSLNIPECKPSEGENDVDKKAYEHWKE
FT                 IISASFNLVHATDEQAKMDIFKIKAGAQLLEVMRGTSSTTDMPEERTHPFS
FT                 NAIARLDRYFGSRTYIIGQRGKLMNTVQIKGESNVAFVRRVAAAAKLCDYK
FT                 GDEEMEAIARTLVKGSSDKRVRVLAHRNWVNQGDMNSLIALVRDREMEVSN
FT                 EEEYQKLNRHNTAAVAMVSQDSVRQPQFRRGATTRFRGNQRGKAIYQRAQS
FT                 HHQGSSRSSCWRCASMYHGPAECPNLDKVCHNCNRRGHLARTCSVVARQGI
FT                 GQKRARSGADEDEPRPKLAAITQNGEDKEEAAQDFVKVE"
FT   CDS           join(1958..4393,4397..5302)
FT                 /product="Gypsy-291_AA-I_2p"
FT                 /translation="FVRFQTXNDKFESSIISQSTNKLICSVPAWNPLTEED
FT                 AYVVGYVAGARVIFFIDSGAQVNTIARKIWDKMLQNESTMNKLHELSEISD
FT                 KKLHAYASPGEIKVMATFLAKLYVSKDRPVMLEKFYVIEETRSLLSFNTAA
FT                 RYSLLDVGLRVPISETGSVWQCELAMVSSVTIPLAKEFPKFNVPPVLLHYN
FT                 KDLPPARNVYTHIPAGFKRLAQQKLDELLAYGIIEPVTEDMDRSFCSSLLV
FT                 VPKGKNDIRLVVDLRGPNKCIYRTPFKMPTLESIIMELHGAKWFSTLDLKH
FT                 AFFHVVLDERCRHLTNFFSGEALYRCRRLPFGLCNAPDIFQEIMQSVILAG
FT                 CKGTVNYQDDVLVFGATIDEHDRNLAEVMKRLEDHNVMINESKCFLQKQEV
FT                 TFLGFNLSASGWSVEEEKIKAIQQFRIPKNQDEVRSFLGLINFIDRFIPNR
FT                 AEKTWRLRELSRAERFYWTEELENEFDYLKNEAWTKIKTLGYYNQSDETEL
FT                 YVDASPQGLGAVLVQFDSQSQPRVIACASKSLSAAEQKYPHTQKEALAMVW
FT                 GVERFSSYLMSQTFKIRTDAKSNEFIFGGLHRIGKRAVSRAEAWALRLQPF
FT                 DFTVESVPGDMNIADTLSRLVQEDKSAKSFDDSAEDHLLFSLDAGNMELNW
FT                 NEIEIEAEIDKEQNDIREALKSGSWNADYRAYECHAKYMRVLGALIFKEDR
FT                 AILPTKLRMKAMELAHQGHLGVSSMKRILRNHFWWPSMNKEVQAYVDKCET
FT                 CLRLSRKNAPLPLTTRELPQGPWEILQIDFFTDKDFGHGEFLVVVDTYSRY
FT                 VNHMFVVHFDMLLSVYRYIHVIEMKHIDAESTNSALLKIFEIWGYPLAIQS
FT                 DNGPPFQSDKFVKMWEDRGIKIRKSIPLSAQSNGAVERQNAGIKHALSAAK
FT                 LDNMNWRTALEKYVHAHNKVRPLSRLGVTPFELLVGWKFRGTFPSLWDSSS
FT                 PEMLDRTDIKEKDAVSKLKSKVYADKQRGAKDSDIQVGDTVLVAIQKRQKS
FT                 DPEFTAERFCVIAREGAKVVVRSERGVQYSRNVQDVKKVPLCLQEQDEQTS
FT                 NKDDRNTSHSKAETQGNDIGIELQDVHDNDGEINGRPKRATRKPNRFKDMV
FT                 LYSIFE"
XX
SQ   Sequence 5432 BP; 1725 A; 1014 C; 1302 G; 1385 T; 6 other;
     atggcgcaga aggttcgaga accactascg atcaggagag gtaagcaaca aagatccaaa        60
     gctattgtta ctatgaagta aactggaact gtagtcgagg cagaatccgg ttaattgacc       120
     tctgatagtc gaggcagagt gtctgaattg ttgattgatt taacaggtct gtagtcgagg       180
     cagtcctgtt agtawgaaca taagaaagag aataatcgga actgtagtcg aggcagtttc       240
     ctgatttgat atgcaatgtg gataatgagg atattctgct ctttcttgtt tcagaacaaa       300
     ctctaaatca aagaagattt cgagaaggaa gcttatggag gaactgatag cgctcaaaac       360
     cgaattggtt cttgcacggg ctgaaagaga ccagttactt cgagaaaagg aaatcggtga       420
     taaaggaatc gatctatcaa gccccagtga ggattccaat gatcatccga aatcagaaaa       480
     cgagtctctg atggtaacaa tgaaccatat gtctcttggc tcgttgaaca tcccggaatg       540
     caagccgtcg gagggcgaga atgatgtgga caaaaaagca tacgagcact ggaaggagat       600
     aatctcggca tctttcaacc tggttcacgc aactgacgaa caggcaaaaa tggatatctt       660
     caagatcaaa gccggggcgc aacttttgga ggtaatgcga ggaacatctt ctacaacaga       720
     catgccggaa gaacgaactc atccgttttc caatgcaatc gcccggctgg atcgatattt       780
     tggatcgagg acctatatca ttgggcaacg cggcaagctg atgaatactg tccaaatcaa       840
     aggagaatcg aacgttgcct ttgttcggcg agttgcagct gccgcgaaac tatgcgacta       900
     caaaggtgac gaagaaatgg aggctattgc gcgaactctt gtcaagggat caagcgacaa       960
     gcgagtacgt gttctggctc atcgtaattg ggtcaaccaa ggtgacatga atagcttgat      1020
     tgcgttagtc agggatcgtg agatggaggt ttccaatgag gaggaatacc agaagctaaa      1080
     tcgccacaac acggcagcag tagcgatggt gtcgcaagat tcagttcgac aaccccaatt      1140
     ccggcgtgga gcaacaacac gattccgtgg caatcaaaga ggcaaagcaa tataccagcg      1200
     ggcacaatct caccatcagg gttcgtctag aagctcctgt tggcgatgcg ccagtatgta      1260
     tcatggcccc gcagaatgtc ccaacctgga taaagtatgc cacaattgta accggcgagg      1320
     tcatctagct cgcacctgtt cagttgtggc tcgtcaaggg attggtcaaa agcgtgcacg      1380
     cagtggagcg gatgaagatg aaccaagacc gaagcttgca gcgattactc aaaacggcga      1440
     agacaaggaa gaggcagcgc aagactttgt gaaggtagaa taatagtaga taatatttta      1500
     agcgttttat ctcacatttg gactgaattt gtttggcata atgacgattt gatgtaatgt      1560
     tgaatttaaa taaaaataat taattaaaat cgataaactc aaacgaaaaa aaaagtttta      1620
     attattgggt gaagaaattc ttgatacggg ttctcggttg gctcaattta tcattcggaa      1680
     gcgttgtttg tagttgggag tttatttgag gtctccatca agtgaaatat taggttcgaa      1740
     tattgttccg tgtgtagtat gagcggagac aaatcgaagg agatggaaaa tattatttgc      1800
     ggcaggtttt cacccaaggt ataaccgttg cataagtttt gcatgcctca tttaccaaca      1860
     aaacagtcta aattggcatt atgaattttc tgcacttatt tggttttaaa tgtgagataa      1920
     gactactaag ttgtataatg cgtcgcaata tttataattc gttcgttttc agaccgmsaa      1980
     cgacaaattt gagtctagca taatcagcca aagtactaat aagttgatat gtagtgttcc      2040
     tgcatggaat ccgcttacag aagaagatgc atatgttgtc ggctatgttg ctggagcgcg      2100
     agtcattttc ttcattgact ctggagcaca agttaataca atcgcaagga agatatggga      2160
     caaaatgctw cagaacgagt ccactatgaa caagttgcac gaattaagcg agatatcgga      2220
     taagaaactg catgcctatg cttcacctgg ggaaatcaaa gtaatggcaa cttttttggc      2280
     aaagctgtat gtttcgaaag ataggccggt tatgttggaa aagttctatg ttatagagga      2340
     gacacggtcm ttgttaagtt tcaacacagc agctcgatac agccttctgg atgtgggact      2400
     gcgagtacca ataagtgaaa caggaagcgt ctggcaatgt gagctcgcaa tggttagtag      2460
     cgtgacaatt ccacttgcca aagaatttcc gaagttcaac gttcccccag ttctactaca      2520
     ttacaacaag gatttgcctc cagctagaaa tgtatatacg catatccctg caggatttaa      2580
     aagattggca cagcaaaagt tggacgagct tttggcatac ggaattatcg aaccagtaac      2640
     tgaagacatg gacagatctt tctgttcctc gttgctagta gtgccaaaag ggaaaaatga      2700
     cattcgcctg gtcgtcgact taagaggtcc aaacaaatgc atttatcgta cgccattcaa      2760
     aatgccgaca ctagaatcaa ttattatgga gctacacggc gcaaaatggt tttctacatt      2820
     ggatttaaaa catgcgttct tccatgtcgt tcttgacgaa cgctgtcgtc atttaacgaa      2880
     ctttttctcc ggcgaagcac tatacagatg tcggcgtctt ccattcggtc tttgcaacgc      2940
     tccagatata tttcaagaga taatgcagtc ggttatctta gcgggatgca aaggcactgt      3000
     taactaccag gacgatgttt tagtgtttgg cgctacaatt gatgaacacg acagaaacct      3060
     agcggaggtt atgaaacggc ttgaagatca taatgtaatg atcaatgaga gcaaatgttt      3120
     tctgcaaaaa caggaagtga cgtttttggg attcaatttg tcagccagcg gttggagcgt      3180
     agaagaagag aagattaaag ccatccagca gttccgcata ccaaaaaatc aagatgaagt      3240
     gagaagtttc ttaggattga taaacttcat cgatagattt attcctaaca gagcagagaa      3300
     gacgtggcgg ttgagagaac tatcgagagc tgaacgattc tactggactg aagagctgga      3360
     aaatgaattc gattacttaa aaaacgaagc ctggacgaag ataaaaactt tgggatatta      3420
     caatcagtca gacgaaacag agctatatgt ggatgcttcc ccccaaggct taggggctgt      3480
     tctagttcaa tttgattctc agtctcaacc aagggtaatt gcgtgtgctt ccaaatcact      3540
     atctgcagct gaacaaaaat acccacatac acaaaaagag gcactggcca tggtatgggg      3600
     ggtagaaagg ttctctagtt atttgatgag tcaaacattc aagatcagga ctgacgccaa      3660
     atcgaacgaa tttatctttg gtggcctaca ccgaattggt aaaagagccg tttcgcgagc      3720
     agaggcatgg gcgctcaggc tgcagccctt cgattttaca gtcgaaagtg tcccaggcga      3780
     catgaatatt gcagacacgt tatctcgatt agtgcaagag gataaatcag caaaatcttt      3840
     cgatgattcg gcagaagacc atttgttatt tagtcttgat gctggtaata tggagttgaa      3900
     ttggaacgaa attgaaatag aagccgagat cgataaagaa cagaatgata ttcgggaagc      3960
     cctgaaatct ggatcctgga atgcggatta tagagcctat gagtgccacg caaaatatat      4020
     gcgagtacta ggagctctca ttttcaaaga ggatcgtgct atactgccaa ctaagttgag      4080
     aatgaaagca atggagcttg cgcaccaggg tcacctagga gtttcatcta tgaaaagaat      4140
     tctgcgaaat catttctggt ggcccagcat gaataaggag gttcaagcgt atgttgacaa      4200
     atgtgaaaca tgtctgaggc tgtcgagaaa gaatgcgcca cttccactca cgactagaga      4260
     gctgcctcaa ggaccgtggg aaatcctaca aattgatttt ttcacggata aggatttcgg      4320
     tcatggagaa tttttggtgg tagtggacac gtattcaagg tacgtaaacc atatgtttgt      4380
     cgttcacttt gattgaatgc ttttatctgt ttataggtat attcacgtca tcgagatgaa      4440
     acatatcgac gccgaatcaa ctaattcagc tctgttgaag atctttgaaa tttggggtta      4500
     tcctctagct atacagagcg ataacggacc cccatttcag agtgacaaat ttgttaagat      4560
     gtgggaagat cgaggcataa aaattcgcaa atccataccc ttgagcgctc aatcgaatgg      4620
     ggcagtggaa cggcagaatg ctgggattaa gcatgcgtta tccgcagcca agttggataa      4680
     catgaattgg agaacggcac tggaaaaata tgtccatgca cataataaag tgcgtccgtt      4740
     atcgcgcctc ggcgttactc catttgaatt actggtcgga tggaaattcc gaggaacttt      4800
     tcctagcctt tgggattcta gctctccaga aatgttggat cggacggaca taaaggaaaa      4860
     ggatgccgtt tctaaactca aaagcaaggt atatgcagac aaacaaagag gagctaagga      4920
     ttcggacatt caggtaggag atacggtttt ggttgcaatt caaaagaggc agaaatcgga      4980
     tccggagttc acggcagaga ggttttgcgt aatcgccaga gaaggagcaa aagttgtcgt      5040
     tcgaagtgaa agaggagtcc aatactctcg caacgtgcag gatgtcaaga aagttccact      5100
     ttgtcttcaa gaacaagatg agcaaacaag caataaagat gatcgaaata cttcccactc      5160
     aaaagcagaa actcagggaa acgatattgg aatcgagctt caggacgtac acgataacga      5220
     cggagaaatc aatggacggc caaaacgggc gacaagaaaa ccaaaccggt ttaaggatat      5280
     ggtactttac agcatatttg aataaacata catagctgtt caaaatgcaa caaaatgaat      5340
     tgaaattatc aaaatgtatc aatattaaca aaaaaataaa aatacttttc tttgtttttt      5400
     tcctacatca agagagtaca ggatggaagt at                                    5432
//
ID   Gypsy-291_AA-LTR repbase;    DNA;    INV; 802 BP.
XX
AC   .
XX
DT   21-FEB-2012 (Rel. 17.12, Created)
DT   26-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-291_AA_;
KW   Gypsy-291_AA-LTR; Gypsy-291_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-802
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-802
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2685-2685 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 802 BP; 236 A; 189 C; 211 G; 166 T; 0 other;
     tgtagagaat aaagaacgat atgaacaata aaactgttaa aaaataactt gcttttaaat        60
     tagtagtttg gtattattta aaaatagctg attcacatat cccatacagt agggtctggc       120
     ctttttgcga attatccact tcgttgtaaa agaggtgtgg cttactctgc tcgagaacgt       180
     gaatagcaga ggcaaaaatc gcgttgaggt ttccctgcca acgaacaaag caatggaata       240
     aaacagtgac accattgcat tcacacctca ttcgtatcac ggacggcaaa gcgaacgggt       300
     caccatcgga atcgggttga gacttccccg acagcagcga agaacagcaa aagagaggtg       360
     cgatcgctcg cgcagctcat tcgtatcacg gacggcaaag cgaacgggtc accatcggaa       420
     tcgggttgag acttccccga cagcagcgaa gaacagcaaa agagaggtgc gatcgctcgc       480
     gcagctcatt cgtatcacgg acggcaaagc gaacgggtca ccatcggaat cgggttgaga       540
     cttccccgac agcagcgaag aacagcaaaa gagaggtgcg atcgctcgcg cagctcattc       600
     gtatcacgga cggcaaagcg atcgggtcat cactggaatc ggatcgagac ttctccgaca       660
     gcagcgaaga gcagaagagt ggtgcgattg ctcgcgcaac ccattcttgt ttcggtcggt       720
     tcgttttgaa ggattgtcat cgcaatggag agtcacaagt tcgtcagggc acctaccgaa       780
     tcggggtccg ccgattacga ca                                                802
//
ID   Gypsy-292_AA-I repbase;    DNA;    INV; 5420 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-292_AA_;
KW   Gypsy-292_AA-LTR; Gypsy-292_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5420
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2686-2686 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4017-4487] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           879..5252
FT                 /product="Gypsy-292_AA-I_1p"
FT                 /translation="MSLTTTCEPFIPGAIPFAQYVEQLEWLFVHNNYTEDR
FT                 YKASFLAVCGTEVYSQLKLLFPGQNFKDIAYKDMVEALKKRYDRKESEVIH
FT                 SFKFWTRKQGQYEKSIDFVLNVKHLAEDCDFGAFKDRAIRDVLVIGINDRQ
FT                 LQKRLFDEDDLTAAKAEKIIVNQEWVAEGTNIIKKDDDRREGVIARLGRRS
FT                 EHPTPPRPSFRNRSRSNSRDRSFSSRNKYRNRYDAKRSNDYDRDYHRQTYL
FT                 CSYCKKKGHIRKYCYKLKRNNSPKEKSRVNFADSPKPSASNSSGLFKRLKK
FT                 DLEAEDISDSDDDMRCMMISSVNRINNPCHVEVLIEKRRLSMEIDCGSAES
FT                 VISEEMFARNFSHLPIKTCNKQLVVIDGNKLKVLGKVEVSVRLGNTQKTLF
FT                 LVVLKCRSDFVPLMGRTWLDVFYSGWRDTFACPTPSAVGVNVLKEEKTVVD
FT                 LKSKFPTVFDRDFSKPITGYKGDLVLKDNSTPIFRKAYQVPLRLKQKVVDY
FT                 LVDLEKDGIITPIEGSEWASPVIAVVKKNQEIRLVIDCKVSINKVLVPNTY
FT                 PLPVAQDIFATLAGAKVFCSLDLEGAYTQLPLTERSKRFMVINTIKGLYVY
FT                 NRLPQGASPSASIFQKVMEQVLLGLENVICYLDDVLISGASYEECKRNLYL
FT                 ALERLAKANIKVNFSKCNFFVNNLPYLGHVLTDKGLLPCPDKVETISEAKA
FT                 PQNVSELKAFLGLITYYAKFIPNLSTKIRCLYALLRKNTKYVWSNECNEVF
FT                 NDCKRYLLKPRLLEYFDPEKPVAIVTDACTYGLGGVMTHVINGEEKPVSFT
FT                 SFTLNEAQRKYPILHLEALAVVCTVKKFHKFLYGKKFKIYTDHKPLIGILG
FT                 KEGKTAMSVTRLQRYIMELAIYDYEIVYRQSSQMGNADFCSRFPLPQEVPE
FT                 KLDRGYIKSLNFTDEFPINYKEVAAETEKDQLLQKIKEYVRKGWPDRVERS
FT                 LLDIYSHHQDLEEVEGCLLFQNRVIVPDTMKQKVMKMLHINHSGINKIKQL
FT                 ARRTVYWFGMNGDLEDFVKFCRICHETTALPKKPAYSEWIPTNKPFGRIHA
FT                 DFFHFDRKTFLVIIDSHTKWIEVEYMRHGTDHTKVIKVFLGIFARYGLPDV
FT                 LVTDGGPPFNSGIFTTFLEKQGIKVLKSPPYHPESNGQAERMVRLVKTVFK
FT                 KFVVDPDVRKLDTDEQISLFLINYRNTCVGEDNKFPSERLLSYKPKVLVDL
FT                 LNPKHDFKKNWTKSDDDQNNFNGGTSDSPSEGFSSLKKGDLIYYKNINKTD
FT                 ARSWIPAKFLKQVSSNILQVLLGSKVVLAHKRQLKTLPVSRRKATKALVFQ
FT                 GENSNRRRDHGVSPHQSSIDRLVDQETAPQQSSTLECANNSIRTGGRKHSE
FT                 VEEVLSDSSSDFYGFVAESFIFTEEEKKTGKRKHSDSEGDLSGSSSDFYGF
FT                 AADSSICTSEENCIPSTSKGQNTKNVRRSKRKLKKIKKDDFVYY"
XX
SQ   Sequence 5420 BP; 1661 A; 912 C; 1268 G; 1574 T; 5 other;
     agtggcaaac gaggattaag ttttgctata tttgattcgc gtgcagtacc gacgggagtg        60
     aacttctggt gagataaacc gttaaattac gaatttggca agaggagncc aaacgttttg       120
     gttagtgcgt ggagtatccc acaatttttc atttgcgcta cagcaggaag ttgctgagca       180
     aattntaagt tctacgccac atgtgaaaag aattatngtg aaaaacaggc cattttagca       240
     tcaaaaaggg gtaaaaggag cgcgttacta ccggcgtcat ttttggtgtg ccttttgtac       300
     gtgcgatttt ttcttttgtg ctgtgttgct tttgtgctct attcaccgta ttcatcggng       360
     gccttttgtt tctactttac gtttgtagag catcgaacgc gaagccaagt ccaaattcga       420
     gcagttgcgg tgagcagtga gaaaaccggc tgtgatatta tcaccccatc atagcaaagt       480
     tttgcagtga gcagttagat ttcttcattg aaaaagtgag tgaagttggt gagaggacgg       540
     atcaaccggc tgcatcgatt gcatgnggat atatagtcgg tgctaaccag caaacgagtt       600
     ttgctgcgga tttgtcgacg aaggaagttg ctgctagctg ttgttgggat ttgctgctgt       660
     tgttgcaact tgctgctgct gttgtcgctt ttcggaagtt tcttgcacat tttacgttta       720
     ctggagactt gggctaatcg tgttttcttc aggtatgtga tttggtttcc ctattgtttt       780
     gtgtacattt ttatttgaat ttgggtttac atttgttgac attgtgcaat tttatttact       840
     tttgttttat ttatttttta tatttgccat atacaaggat gtctttaaca acgacttgcg       900
     aaccatttat tcctggtgcc atcccttttg cgcagtatgt agagcagtta gaatggttat       960
     ttgtacataa caactacaca gaggataggt acaaagcatc ttttttagca gtttgcggga      1020
     cagaagttta ctctcagttg aagctgttgt ttccagggca gaattttaag gatattgctt      1080
     acaaggatat ggttgaagca ttaaaaaagc gttatgatag gaaggaatct gaagtaattc      1140
     acagttttaa attttggacc cgcaaacaag gtcaatatga aaagtctatc gattttgttt      1200
     tgaacgtgaa acatttagct gaggattgtg atttcggcgc atttaaggat cgggcaataa      1260
     gagatgtttt agtaatcggg ataaatgaca ggcagttaca gaagcgttta tttgatgagg      1320
     atgacttaac tgcggcaaaa gcggagaaga ttatagttaa tcaggagtgg gttgcggaag      1380
     gaacaaatat tattaaaaag gacgacgaca gaagagaagg cgtgattgcg cgtttaggac      1440
     gacgttctga gcacccaact ccaccaagac caagttttag aaacagaagc cggagcaaca      1500
     gtagggatag gtcgttctca tccagaaaca aatacagaaa cagatatgac gcaaaacgga      1560
     gcaacgatta tgaccgggat taccataggc aaacatattt atgctcgtat tgcaagaaaa      1620
     agggccacat taggaaatat tgctacaagc tcaaacgaaa caattctcct aaagaaaaat      1680
     ctagagttaa ctttgctgac tcgccaaaac catcggcttc taattcatca ggtttgttta      1740
     aaaggctaaa aaaggatctt gaagcagagg atatttcgga ttctgatgat gatatgcgct      1800
     gcatgatgat ctcatcggtt aatagaataa ataatccttg ccatgtagag gttttaattg      1860
     aaaagcgtag attgtcaatg gagatagatt gcggctccgc tgaatcggta atttctgagg      1920
     aaatgtttgc tagaaacttt agtcaccttc ccatcaaaac ttgcaataag caattagtag      1980
     tcatcgacgg caataagtta aaggttttgg gtaaggttga ggtttcggtc agattaggaa      2040
     acacacagaa gacgctcttt ttagtagtgt tgaaatgtcg gagtgatttt gtgcctctca      2100
     tgggaaggac gtggttggac gtgttttatt cgggatggag agatactttt gcctgcccta      2160
     cgccatccgc agttggagtc aacgttctta aggaggagaa aacagttgtt gatttgaaga      2220
     gtaagtttcc cacggtattt gatagagatt tttctaaacc tataactggt tataaagggg      2280
     atttagtgct aaaggacaat agtactccaa tttttaggaa agcataccag gttcctttgc      2340
     gcttgaaaca aaaagttgtg gactatttag ttgacctgga aaaggatggt atcataacac      2400
     ctattgaagg tagtgagtgg gcttctccag ttatagcagt ggtaaaaaag aaccaggaaa      2460
     ttcgtctagt gatagactgt aaggtttcca tcaacaaagt gttggtgcct aacacttacc      2520
     ctttgccagt cgcacaggac atttttgcta cactggcagg ggcaaaagtt ttttgttcct      2580
     tggacctgga aggagcttac actcagctgc cattaacaga gagatcaaaa cgcttcatgg      2640
     tcataaatac aatcaaaggc ctatacgtgt acaacagatt gccacaaggt gcgtctccaa      2700
     gtgcttcgat attccaaaag gttatggagc aagtgttgct aggattggaa aacgttattt      2760
     gttatttgga cgatgtgttg atatctggag ccagttatga agagtgcaaa agaaatcttt      2820
     atttggcctt agagcgttta gctaaggcta atataaaagt taatttcagt aaatgcaatt      2880
     tttttgttaa taatcttcca tacctaggcc atgttttaac ggataaggga ttattaccat      2940
     gtccagataa agtggaaact atcagtgaag caaaagctcc acagaatgtt tcggagctta      3000
     aggctttttt gggattgatt acgtactatg cgaagtttat cccaaattta tctactaaaa      3060
     tacgctgcct ctatgcttta cttaggaaaa acacaaaata cgtttggtcc aatgaatgca      3120
     acgaagtttt caatgattgt aagcgttatt tgttgaaacc gagacttttg gaatactttg      3180
     atccggagaa accggtggcc attgtaacgg atgcttgtac ttatggattg gggggagtca      3240
     tgacccacgt aattaatggg gaagaaaaac ctgttagctt tacttctttt acgttgaacg      3300
     aggcccaacg gaaatatccc attttacacc ttgaggcttt agcagtcgtg tgcacggtaa      3360
     aaaaattcca taaatttctg tatggaaaaa agtttaaaat ttacactgat cataaaccgt      3420
     tgatcggaat tcttggaaaa gagggtaaga ccgcgatgtc agtaacacga ctgcagcgat      3480
     acatcatgga attggccatt tacgactacg agatagttta tcgtcaatca tcacaaatgg      3540
     ggaatgcaga cttctgctcg aggttcccgt tgcctcaaga ggtgcctgag aagttggacc      3600
     gtggttacat aaaaagcttg aactttaccg atgaattccc gatcaactac aaggaggtgg      3660
     ccgcagaaac agagaaagat cagctgttgc agaaaatcaa ggagtacgtc cgtaagggat      3720
     ggccagatcg ggtagaaagg agtttgctgg atatatactc tcatcaccag gacttagaag      3780
     aagttgaggg ctgcctactt ttccagaatc gtgtaatagt tccggataca atgaaacaga      3840
     aggtgatgaa aatgctccac ataaaccatt cgggaatcaa caaaataaag caattggcca      3900
     ggagaactgt atattggttc gggatgaacg gtgatttgga agattttgtt aagttttgca      3960
     ggatctgcca tgaaaccacg gctcttccca aaaaacccgc ttattcagaa tggatcccga      4020
     ccaacaaacc ttttggtcgt attcatgctg atttttttca tttcgatagg aagacatttt      4080
     tggtaataat agatagtcat accaaatgga ttgaagtgga atacatgagg catgggacag      4140
     atcacacgaa ggtaattaag gtgtttcttg gtatttttgc gcgatatggg ttacctgatg      4200
     ttttggtgac agatggtggg ccacctttca attcaggaat ttttacaact tttttggaaa      4260
     aacagggcat aaaagtccta aaaagtcctc cgtaccaccc ggaaagcaat gggcaagcgg      4320
     agagaatggt tcgtctggtt aaaacggttt ttaagaagtt tgtagtggat cctgatgtga      4380
     gaaagctgga cacagatgaa caaatttcgc tttttctaat aaattacaga aatacctgtg      4440
     tgggggagga taataagttc ccatcagagc gattgctttc ttacaagcca aaagttttag      4500
     tagacctttt aaacccaaag catgatttta agaagaactg gacaaaatca gatgatgatc      4560
     aaaacaattt caacggtgga acatcggata gcccatccga gggcttttct agcctaaaaa      4620
     agggtgatct gatatattat aaaaatatca ataaaacgga tgcaaggagt tggatacctg      4680
     ctaaatttct aaaacaagtt tcttcaaata ttttgcaggt gctgttgggg agcaaagtcg      4740
     ttttggctca taagcgccag ttgaagactt tacccgtttc tcgccggaaa gcaaccaagg      4800
     ctttagtttt ccaaggagag aacagcaatc gtcgcagaga tcatggagtt tcgccacatc      4860
     aaagcagtat tgaccgtctc gttgatcaag aaaccgcacc acaacaaagc agtaccctcg      4920
     agtgtgcaaa caacagcatc agaaccggag gaagaaagca tagcgaagtc gaagaagttt      4980
     tgtcggattc gagttctgat ttttatggat ttgtcgcgga gtccttcatt ttcaccgaag      5040
     aagaaaaaaa aaccggtaaa aggaagcata gcgacagcga aggagatttg tcgggctcta      5100
     gttccgattt ttacggtttc gccgctgatt cttctatctg caccagcgag gagaactgca      5160
     ttccatcgac ttcaaagggt caaaatacaa aaaatgtgcg tcgttcgaaa agaaagctga      5220
     agaagattaa gaaagatgat tttgtttatt attaagaatg caaacagtgt tattacgtat      5280
     tgaattggta aaattaagag catcattatg ctatcgaatt ttataatgga ttgtataata      5340
     agtgtgagat gtgataattg aaagtttgaa ataataagca ttcgaaggtg attagaataa      5400
     ggtctcaagg gataaggagt                                                  5420
//
ID   Gypsy-292_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-292_AA_;
KW   Gypsy-292_AA-I; Gypsy-292_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-221
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2687-2687 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 221 BP; 65 A; 38 C; 62 G; 56 T; 0 other;
     tgtgacggcc aacagccggc gggaaaacgg acgaaccctt tcttgtgagt gccagggcga        60
     agagagcacg agtgagagat aaagccgaag actagggagt ctgagcgttg tatgtaaaag       120
     aggtgaaata tagattcatt cgttttgtga ctgaagacca cactggttgt atttactggt       180
     tatggtaaat ccgagtctta gactatctta cagttattac a                           221
//
ID   Gypsy-293_AA-I repbase;    DNA;    INV; 6169 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-293_AA_;
KW   Gypsy-293_AA-LTR; Gypsy-293_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6169
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2688-2688 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5133-5612] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1339..2307
FT                 /product="Gypsy-293_AA-I_1p"
FT                 /translation="MALNIETASKIAELIPNYDGGPEGAKSFTDAINFLDG
FT                 VVTAAQKPGTIQLALTKLTGKARELFTEVPADLATIVTKITENCVDKTSAD
FT                 LALSNLQNLRLRNDVQKFTAEVEKLCDKLTRAYVREQIPAEAARKLSQKAA
FT                 VKTMINQAQSTETKMMLKIGKFDTLKDACNILIENENTSTTTSQILQAGNQ
FT                 TNRRFDNAPRNFKQYSSRREYENHTNRNRSFDRFRNRNFNERRPVNRDFYQ
FT                 RGNRGNGNYRGRGYGQNRHQNYGHQNGNSRVYCANEQPQSGNVVHNNTANQ
FT                 APPTCAHVGVVQSNQQSQPSQMQQHFLGQRM"
FT   CDS           2328..5954
FT                 /product="Gypsy-293_AA-I_2p"
FT                 /translation="MQTTVLNINLNASNFITAGALMANRKCSFIIDCGADV
FT                 SLFKMDVIEPTQIIDTAVKTRLTGITDGAVHTLATTVTDLYFDHGLTIRHT
FT                 FHLVPSNFPIATDGILGRDFLTKNKCIIDYETWLLNFNLGDVQISIPIEDN
FT                 VNNGFILPNRSEVIRKLSNLPICEDMVVLSEEIQPGIFCGNTIISPEMPYV
FT                 KFINTSNDPVYISNSTFKPKLEPLKDYCIMQFSRNKNNSAERVQEILKELN
FT                 VSKLPEYSRREFTKLITDYADIFCLPNEKVTTNNFYSQNIVLNDTVPTYIP
FT                 NYKSIHSQNVEIQSQIKKMLNEKIIEPSVSPYNSPILLVPKKSNNGEKKWR
FT                 LVVDFRQLNKKVMADKFPLPRIDSILDQLGRAKYFSTLDLMSGFHQIPLER
FT                 DSRRYTAFSTQTGHYHFMRLPFGLNISPNSFQRMMTIAMAGLAPECAFVYI
FT                 DDIVVIGCSVNHHLTNLVKVFERLRHYNLKLNVQKCKFFRTEVTYLGHHIT
FT                 DHGILPDSSKFDAIKNYPKPNNADEVRRFVAFCNYYRKFVPNFATVAHPLN
FT                 QLLKKNAQFQWTSECETAFQKLREYLMSPTILQYPDFLKEFILTTDASDVG
FT                 CGAVLSQRFENNDLPIAFASKTFTQGEKNKPVILKELTAIHWAIKYFRAYL
FT                 YGHKFTVRTDHRPLVYLFGMKDPSSKLTQMRIDLEEFDFTIEYIKGKNNTG
FT                 ADALSRIVMTSDDLKRGNVLVVNTRSMTRNKQRQNDKSKQVQNTPVRSQKI
FT                 DHLLTYITENPSETNKLWKLHVHIKNKIWRFILKKKEERFIAHLRQDNENG
FT                 SQIFEFVLPIIEKNAKVLNVNQIALSINDDIFQNVSLNSFKTIVNNTLKNL
FT                 QIIIYQPPRFIDDLQEIQTILRNYHDTPTGGHIGQHRLYLKLREQYTWRDM
FT                 KSSISRFVKACESCKKNKIIKHTKEKMVVTTTPSSPFEIISIDTVGPLPIS
FT                 IQGNRYAISIQCDLTKYIILIPIKTKEAQIIAKALVENFILIYGSFIELRS
FT                 DQGTEYKNDVLDRICKLLGIRQSFATAYHPQTIGSLERNHRCLNEYLRSFI
FT                 NDQKNDWDEWMKFYSYSYNTTPHTDHGFTPYELVFGRKSNLPHEIYEKGIE
FT                 PVYNLNEYYYELKYKIQRTNEIAKENLIKHKILRKDQYEAKSNSIQVHVGD
FT                 SVYLTNENRKKLDEIYTGPYTVVEVSEPNCKIQDPITTKITEVHLNRLIV"
XX
SQ   Sequence 6169 BP; 2287 A; 1072 C; 1109 G; 1701 T; 0 other;
     tatactttat ggcgacctga cattcgaaca ggcaatgttc ggtactaaaa agtgaacttt        60
     ggaaatctgt gttaaagtgt taagtgttaa agtgttctta aaaatctcgg tatttttcgt       120
     taaaagaaga ttaaaaatgg gtaccgagga gtcaaaggct caggtacaac acaacgggga       180
     cacacacatc gagatagtga acactcagaa cgaacactcc gcgaaactcg atacgatcga       240
     gacgacactg tggttcgtga ctgctggagt gagtttacaa ctcgtgctaa gcctgtgggc       300
     tttaattcag cgaagaataa acagcaaagt gttgaagagg gcagacaagc tgtgcaaatt       360
     aaacgaacta gcaacagaaa agtgaacaag aaaaacactt tgtgattaag gtaaaagaag       420
     agaatgctgg tgaaaatagt aatcgcggta atagtaacaa tagtgttaca atttacaatt       480
     ttacgcggat ggttaacagt tctagaagaa accaaacttt tatggacaca gttagacggt       540
     gcagaagtac aggtgatttg tgtgtaatga gagcaaaaac taaaaggcat ctacctagcc       600
     tctaataggt aaacagtgct taaaggtgca ataaaaacaa gaagagatga gcagagacga       660
     ggcagaccaa caacgaagct gaagtgatcc gagtgataac atgtgcccac tcacgctaga       720
     ccaacggatg cagtggaaat cgaaaaaagg acatcggtcg gtgagcgaaa tatgaaaatc       780
     atgacatata tttgtttaca caccattttt gtgcgatttg ttagaaattt ataaatatat       840
     tgtaaatcac tatatatata taattgtttt acccaccatt tttgaatttg attgatcggt       900
     tcgatatata tgagcagtat aattgaaatg tgatgtttga agtaattgaa gaaaaaatca       960
     acgaactgaa tcgaattgct acaaatttta aaaaatctat aaataagtgt tataaaccag      1020
     agactttact tgcaaaaaga gcacaagtcc aagaactttt tattcaaatt caaaatttga      1080
     ttcgatcaaa tttttttttt tttttttttt ttttctatct ttattaacga gatttttagc      1140
     cctgggctag ttcatctcgg aattcgatca aattcagatt taacgcaatt acaacacgac      1200
     tgttttataa catttgcgaa tgaatcgtac caaagtactt tagaaataat caacaagaag      1260
     ttagaaagcg gaaatttctt taaaataaaa tttaaaaata tagtgaacag aataataata      1320
     acaaatcgga aacataaaat ggcgctaaat atcgagacgg cttccaaaat agcggaatta      1380
     attccgaact atgatggtgg cccagaagga gcaaaatcat tcactgacgc gattaatttt      1440
     ctcgacggtg tcgtaacagc agcacaaaaa cctggaacaa ttcaattggc tctgactaaa      1500
     ctaacaggca aagcaagaga attgtttacg gaggtgcctg ctgatttagc aacgatcgtc      1560
     acgaaaatta cggaaaactg tgttgataaa acgagtgctg atttagcact cagtaactta      1620
     caaaatttga gactccgcaa tgatgtacaa aaattcaccg cagaagtaga aaaattgtgc      1680
     gacaaactga cacgagctta tgttagggaa caaattccgg cagaagcagc gaggaaactc      1740
     tctcaaaagg ccgctgttaa gacgatgatt aatcaggctc aatctactga aacgaaaatg      1800
     atgttgaaaa taggtaaatt tgataccctg aaggatgcat gcaacatctt gattgagaac      1860
     gaaaatacct cgaccacaac atcgcaaatt ctgcaggcag ggaaccaaac caatcgcaga      1920
     tttgataatg cgccgaggaa ctttaaacaa tattcctcgc gcagggaata tgaaaatcat      1980
     acaaaccgga accgatcttt cgatcgcttc cgaaaccgaa atttcaacga aagacgacca      2040
     gtaaatcgcg atttttacca acgtggtaat cgcggtaatg gcaattatcg cggcagaggc      2100
     tatggtcaaa atcgtcatca aaattatgga catcaaaacg gtaacagtcg agtgtactgc      2160
     gcaaacgagc aacctcaaag tggaaacgta gtacacaaca atacagcaaa tcaggcaccg      2220
     ccaacgtgtg ctcacgtcgg cgtcgtgcaa tccaaccaac agtcgcagcc tagtcaaatg      2280
     caacaacatt ttttaggcca gcgcatgtag aagtcattcc gaacgaaatg caaacgaccg      2340
     tccttaacat aaatttgaac gcatcaaatt tcataacagc tggtgcgctc atggcaaatc      2400
     gtaaatgcag ctttatcatt gactgtggag ctgacgtatc actttttaaa atggatgtaa      2460
     ttgaaccaac gcaaattatt gacacagcag taaaaactcg attaacgggt attactgacg      2520
     gagctgtaca tacgctagca actacggtaa ctgacctata ttttgatcat ggtttaacca      2580
     ttcgacatac tttccatttg gtaccaagca attttccgat agcaacagat ggaattttag      2640
     gaagggattt tttgacgaag aataaatgca taatcgatta cgaaacatgg ttactcaact      2700
     tcaatttggg agatgtacaa atatctattc caatcgagga taacgttaat aatgggttta      2760
     ttttgccaaa cagaagcgaa gttattcgaa aattatctaa tttgcccatt tgcgaagaca      2820
     tggttgtgct ttcagaagaa attcaaccag gaattttttg tggaaataca atcatttcac      2880
     cagaaatgcc ctatgtaaag tttataaaca caagtaatga ccctgtttat atatctaatt      2940
     caacatttaa acctaaatta gaacctctga aagattattg tattatgcaa ttttctagaa      3000
     ataaaaataa ttccgcagaa agagttcaag aaattttaaa agagttaaat gtaagtaaac      3060
     tgccagaata ttcaagaaga gagttcacca aattaataac cgattatgca gatatatttt      3120
     gtttacccaa cgaaaaagta acaaccaata atttctattc acaaaatata gttttgaatg      3180
     atactgttcc tacgtacatt cccaactata aatcaattca ctctcaaaat gtcgaaattc      3240
     aatctcaaat aaaaaagatg cttaatgaaa aaattattga gccatcggta tccccataca      3300
     attcgccgat acttttagtt ccaaaaaagt ctaataatgg agaaaaaaaa tggcggttag      3360
     ttgtcgattt tagacaacta aacaagaagg tcatggctga taaatttccg ttaccaagaa      3420
     ttgattcaat tttagatcaa cttggtagag caaagtattt ctcaacatta gatttaatgt      3480
     cgggatttca ccaaattcct ttagaaagag actcgagaag gtacactgct ttttccactc      3540
     agactggaca ttatcatttt atgcgactgc catttggact gaatatcagc ccaaatagtt      3600
     ttcagcgtat gatgacaata gctatggctg gattggcccc tgagtgcgct tttgtataca      3660
     tcgatgacat tgtagtcatc ggttgttctg taaaccatca tttaacaaat ttagtaaagg      3720
     tttttgagcg tttaaggcat tataatctta agcttaatgt ccaaaagtgt aaatttttcc      3780
     gtactgaggt gacatattta ggacatcata taactgatca tggaatttta cccgacagtt      3840
     caaaattcga tgcaataaaa aattatccaa aacccaataa tgcagacgag gtacgaaggt      3900
     tcgtagcttt ctgcaattat tatcggaaat ttgtgccaaa ttttgccact gtggcacatc      3960
     ctttgaatca acttttgaaa aagaacgcgc aatttcagtg gacttcggaa tgcgaaacag      4020
     catttcaaaa attaagagaa tatttaatgt caccaactat tctccaatac ccagattttt      4080
     tgaaagaatt tattctcacg acagacgctt ctgatgttgg atgcggagca gtcttgtccc      4140
     aaagatttga aaacaacgac ttgcctatag catttgcgag caaaactttc acacaaggcg      4200
     aaaagaataa accggtcata cttaaagaat tgacagccat acattgggca ataaaatatt      4260
     ttagagctta tctgtatggt cataaattca cagtacgaac ggaccataga ccacttgtat      4320
     atttattcgg aatgaaagat cccagttcta agttgactca aatgcgtatt gaccttgaag      4380
     agtttgattt tacgattgag tatatcaaag gtaaaaataa tactggtgcg gatgcattat      4440
     cacgtattgt aatgacttcg gatgatttga aaagaggcaa tgttctagta gttaacacta      4500
     gatcaatgac tcgaaataaa caacgccaaa atgacaaaag caaacaagtt caaaatacac      4560
     cagtgcgtag ccaaaagatt gatcaccttt tgacttacat tactgagaac ccatctgaga      4620
     cgaacaaatt atggaaactc catgtgcaca tcaaaaataa aatttggaga tttatcctaa      4680
     aaaaaaaaga agagcgattt atagcgcatc tacggcaaga taatgaaaat ggaagtcaga      4740
     tattcgaatt tgtacttcca ataatcgaga aaaatgcaaa agttttaaat gtaaatcaaa      4800
     tagcgctttc tattaatgac gatatattcc aaaatgtctc tttgaattcg ttcaagacga      4860
     tagtgaataa tacgttgaaa aatttacaaa tcataattta ccaaccacca agattcatcg      4920
     atgatttaca agaaatccag acaatactgc gaaactacca cgatacacca acaggaggac      4980
     acataggaca acatcgcttg tacctcaaac tccgtgaaca atacacctgg agggacatga      5040
     aaagttcaat ttctcgattt gtgaaggcct gcgaatcgtg taaaaagaac aagataatta      5100
     aacatactaa ggagaaaatg gttgtaacta caacgccatc ctcacctttt gaaataatat      5160
     cgatagatac ggtaggacct ttaccaatta gcatacaagg aaacagatat gccataagca      5220
     tacaatgtga ccttactaaa tatataattt taattcccat taaaactaag gaagctcaaa      5280
     ttatagctaa agccttagta gaaaacttca ttcttatata tggttcattt attgagttaa      5340
     gatcagatca aggtacagag tataagaacg atgtacttga tcgtatatgt aaacttttag      5400
     gtataagaca atcatttgca actgcctacc atccccagac aatcggatca ttagagagaa      5460
     atcacagatg cttgaatgag tatctgagat cgttcattaa tgatcaaaag aatgactggg      5520
     atgagtggat gaaattttat agttattcat acaatacaac tccacatact gaccatggat      5580
     tcacacccta cgagttagta tttggacgga aatcaaactt gccacatgaa atatacgaaa      5640
     aaggaattga acccgtttat aatctgaatg aatattacta cgaactaaaa tacaaaattc      5700
     aaagaacaaa cgaaatagca aaagaaaacc tcatcaagca caaaatttta cgaaaagatc      5760
     aatatgaagc aaaaagcaat tcgatccaag ttcatgttgg agattcagtg tatttgacca      5820
     atgaaaacag gaaaaaacta gatgaaatat atacaggtcc ttatacagta gttgaagttt      5880
     ctgaaccaaa ctgcaaaata caagatccaa taacaacaaa aattacagaa gtacatttga      5940
     atagactaat agtttaattt tattttgatt tttatattaa ttgtgatact tgaaatccaa      6000
     atacattagc attatataaa taatatttaa agttccaccg agttagacat gaaccaaatt      6060
     tcaaggttag atataaattc aaattagttt tattccaatt gtggaggtgt ttggataaac      6120
     tctttagaac gatttcactt cgttgcatca ttcttttaaa gggggaagg                  6169
//
ID   Gypsy-293_AA-LTR repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   22-FEB-2012 (Rel. 17.12, Created)
DT   22-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-293_AA_;
KW   Gypsy-293_AA-I; Gypsy-293_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-471
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2689-2689 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 471 BP; 165 A; 96 C; 75 G; 135 T; 0 other;
     tgtagcatcc caaataatat cattcatata ccatttcact gctcgagtca taatttacat        60
     taaggcactt gattgccaac attcattagt gcatactcag atttcacaac agacctcatt       120
     caaaatttat tgcatacaca tgttttcatg aacatgttat ttcgaccata tcataacatt       180
     gaatttggga ctaggcagtt gacacttgcc tgacccacat tcaatgttga acaaacagaa       240
     aataccaccc gtgcagtaaa agacacatgt tgaacaaaca gcctgcttca tgacgattgg       300
     ctatcgtctt cacaaaaata agtccaagct cctcccatag aatttaagtt tgtgtagact       360
     taagcttgag tgtagagtta aggtttgatg taaatcaaaa agaaagatac aagacagatt       420
     gatttgaacc aagaacaaaa acggacgtgt tttcaatgtg atatcaccgc a                471
//
ID   Gypsy-294_AA-I repbase;    DNA;    INV; 4919 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-294_AA_;
KW   Gypsy-294_AA-LTR; Gypsy-294_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4919
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2690-2690 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3893-4351] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2657..4213
FT                 /product="Gypsy-294_AA-I_1p"
FT                 /translation="MLGFDNLILQIRTDIVKRRLTERNIMLNDSKTVECVS
FT                 QTDFLGFNLTSNGVRISQEKLQAIREFREPQSAEEVRSFLGLVTFVSRHIP
FT                 NLSTIANPLVTLTKKNTIFNWTAAHQKAFELLKTSLLKEETLAYFDPELET
FT                 FVVTDASPVGLGAVLFQKTRSGEYNIISYASKTLSDVEKRYAQTEREALAL
FT                 VWAPEKFHFYLYGKFFWLITDHKPLVTIFGDRSKPCARIDRWKLRLMSYDY
FT                 KVIYRPGKSNIADPLSRMCQNQTLCPSSYDEESERIVRLISSDVSPVAIPV
FT                 IEIIEATKKDLDLLELIKWLPYPHKRWPKTLARYRLVANDLSTDGQIILKN
FT                 QKIVIPRSLQKKILQLAHEPHLGIDAMKRRLREKVWWVRIDTMVDSFVKEC
FT                 HGCLLVSQPSVEPMTRIEMPSKPWRKIAIDFMEVLNGIHLLVAVDYHSRFP
FT                 EIEIMTSTTANLTIFRLRTIFSRYGFPEEIVCDNGPPFRSEEFKDYCTSND
FT                 IRINHSIPYAPFQNGLVERQNRT"
XX
SQ   Sequence 4919 BP; 1652 A; 851 C; 1056 G; 1357 T; 3 other;
     ttggcgacga aagtgaagga cgtttggccg ccggcagaaa gttccagccg cggaagagga        60
     aaaaagtgag aatcgcgagg ctcgagagtg agaattattt ggaaatcatc gttgagcgga       120
     acagaaaatg gctacggtaa ttatacctta tgttaatttc aggtggagaa aaatatttga       180
     cagttttatt gagtgaattg tttcaaattt tgacctgagc caaagggaag acattccagt       240
     ctggccagga aaaatctcag acatagagaa agaatgttct agtctgtctg agtagtgact       300
     agaaacaaag agaattcgga aaattctagt ctgttctgga aaaatcctga cacataggga       360
     ttaaaggtaa tccagtctgt ccaggtagac aaagggaaat caatttccag cctgtctccg       420
     aattgaaaag attgcaggga acataggttc cagtccaata aaattagtga agacgtagtg       480
     aattgtatca agaccgtctg aaaaaaaaat caacgctgtt gttgatgtcg ctttggaccg       540
     ttgctatgca acggttgagt ctaatggatg caaatgaaaa gttgatccaa ttcacgaaga       600
     aaataaataa ctgtcaaata gaagattatt ttgaatataa ttttataaat tataattgga       660
     atcatattat tccacagttc aattttacaa ttaccccgtt tgttgagaat gatgttggtc       720
     ctacaagctc acgctgggat ctgtggaaag atcagttctg cgcatatctt gcgttgaaaa       780
     acgtaacgga tcatgaggaa atgtacaagg ctcttatgtg ttttggaggt ccggatgtac       840
     ggaaaattgc tcaaaatgcg ccatctgcgg tcagcaatgt tatggacaat ccttaccgca       900
     tcgcgatgga ggttttggac aattattatg cgcctcgtat gtctttgcgg tacgagcgat       960
     tcaaattcag acagatgatg ttcaatcctg atgagaagat agatcaattc gtcattcggt      1020
     tgaggtcaca ggccgccctt tgcgattttg atgaccagct cgatcaaatg ttgatggacc      1080
     agatagttgt agctacacaa aatgacgata aactgagagc aaaatatctc gaggctgatg      1140
     tttgccttga tgatatgctg aaaattggtc gaacacacga gtcagtaaga gcacaggtaa      1200
     tgttaaacta cttgaaaatt attttaatgt gtcccatgta atatatatat atgtaatttc      1260
     accaattaaa aaaataaaat aaaataggtt caagagtttc gtggcaagtc aaacgagatt      1320
     ggtgatttga acaccatgca gagcattgac aaaaatgcag ataaacctag tcggacttgc      1380
     tttaggtgtc ttggtaatca tttctctaga gatccaggat gtccagcccg ttcatcacgt      1440
     tgcaacaaat gtaagtctaa aggacacttt gcccggtgtt gtgatcgttt ccgtaaattc      1500
     gaaagtcaac aatcaagatt caagagatcg atgaagcaag aaactgggag gacgaacgga      1560
     aagtctcgat tcgatagaaa accgaaattc attcgcgaag ttgatgatgt gaccaagccc      1620
     gtggagatcc gagaaatttt tcatctggaa ggcaaacggt cagttcaagc aacagtagga      1680
     ggtgtcaata tcaggttcat catagataca ggtgctgatg aagatgtact aagcgaaatg      1740
     gattggagac gtttgaagca agttggattt gaagctttcg gtattcgcaa aggaagtgat      1800
     aagatttttc atgcgtatgg ttcaaacaaa gccctagttg tactaggtga agttgatgtg      1860
     aaaatcgcaa tcgaagatca gtcctgcttc actacgcttt acgttatcca agatggtaaa      1920
     tgttccttac tatcgggaaa cactgccgaa aagcttggtg tggtaaaatt cctcagatcg      1980
     ttgtctgatg atacactgcc tgcaattaaa ggtgagtaaa aaaattgtgc tttaaattta      2040
     tattaccatt ggaaaattat tgaaataaat attaaaaaat ttagatatgt gcgcatcgat      2100
     caaaatcgat aaaagtattc ctcctgttca acaatcttat cgtcggatcc ctattccttt      2160
     agaagaatta actcttttga agcttaaaga actagaaaaa caggacatta tagagcgtgt      2220
     tcgagatgcg tcagaatggg tatctccaat gattgtaaaa cggaaaagtt cgactgaagt      2280
     gagaatcata atagatcttc gagaagctaa taaagctata ataagagaga ttcatcctct      2340
     tccaacattg gagcaaatgg cttgccaact gcgaggaagc aaggtatttt caaaattcga      2400
     cattaagcaa gcattccacc aactcatgtt gcgtgaagat tgccgttaca tcaccacatt      2460
     catctctcct ttgggtctta tgagatataa gcgattggtt tttggtttat cagcggcacc      2520
     tgaacttttt caaaagtgta tggagacaat attgggagaa ttcccatggg tnattgtgtt      2580
     tattgatgat atcttgatac atgctcccga tatagcaaca ttgaaggtat tttaaacttt      2640
     agaatattat gtttaaatgt taggttttga taatttgatt ttacagattc gaactgatat      2700
     tgtgaaacgt cgactaaccg aaaggaacat aatgttaaat gattccaaaa cagtagaatg      2760
     tgtctctcaa actgattttc tcggatttaa cttaacatcg aatggtgttc gcatttcaca      2820
     agagaagtta caagctatca gagaatttcg ggaaccgcag tctgccgaag aagttcgaag      2880
     ctttctgggt ttagtaacat tcgtaagtcg tcacattcca aatttgtcaa ctattgccaa      2940
     tccgctagta actcttacga agaaaaacac aatattcaat tggacggcag cacaccagaa      3000
     agcgtttgaa ctactgaaaa ctagtttact aaaagaagag accttggctt atttcgatcc      3060
     tgagttagaa acattcgtag ttactgatgc cagcccagtc ggcttaggtg cagttctgtt      3120
     tcagaaaaca agatcgggag aatacaacat aattagttac gcttcaaaaa cactgtcaga      3180
     tgtagaaaaa cgatacgccc aaacggaacg tgaagcttta gctttagtat gggcaccaga      3240
     gaagttccat ttttacctat atgggaagtt tttctggctc ataacagacc acaaaccact      3300
     tgtaacgata ttcggagacc gatcgaaacc ttgtgctagg attgacagat ggaagttaag      3360
     attgatgtct tatgactaca aagtcattta tagacctgga aaatccaaca ttgcagatcc      3420
     attatctaga atgtgtcaaa atcagacctt atgcccaagt agctacgatg aggaaagtga      3480
     gagaattgta aggttgattt cgtctgacgt ttctcctgta gcaattccag ttattgaaat      3540
     aatcgaagcc actaaaaaag atttagactt actggaattg attaaatggt tgccttaccc      3600
     acacaaacgc tggccgaaga cattagctag atacagatta gttgcaaatg atctatcaac      3660
     agacgggcag ataatattga agaatcagaa aattgtcata cccagaagcc ttcagaagaa      3720
     aattctacaa ttggcccatg aaccacatct tggtattgat gcaatgaagc ggcgattgag      3780
     agagaaagtt tggtgggtgc gtatcgatac gatggtggat agttttgtta aggaatgtca      3840
     tggatgtttg cttgtttcgc aaccatcggt ggaacctatg actcgtattg aaatgccatc      3900
     caaaccatgg aggaaaattg ccatagattt tatggaagta ttgaatggca ttcatctttt      3960
     ggttgcagta gactaccatt caaggtttcc ggagattgaa atcatgactt ctacaacggc      4020
     aaatctgacg atattcagat tacgcaccat cttttcaaga tacggattcc cagaagaaat      4080
     tgtgtgcgat aatggtccac catttcggtc agaagagttt aaggattatt gcacatcaaa      4140
     tgatattcgt attaaccatt caattcctta tgcaccattt cagaatggtc tagtagaacg      4200
     acagaacagg accntactga aaactatacg gattagtgta gctatgggaa gagattggaa      4260
     aaacgatcta tacagttttc ttttggctta ccgaaacact ccccactcca ttactggaaa      4320
     atcaccagcg gtcctaatgt ttggtagaac gttgaaggac aaattacctg aagcgctgaa      4380
     tacgcaagaa gatgagaaag atgtggtaac cagttttgac caaattaaaa aggataaagg      4440
     aaaacaatat ggcgatttta aaaggaaagc taaatactcg gaaattgacg tcggcgatac      4500
     tgtgctactg aagaaccaaa tgaagaaaaa caaacttact actaatttca atccacagcc      4560
     taacatagtt ttaagacgaa acgggacgag gcttacggtt aaggatctca aaaccggagc      4620
     agaaagcgac agacatgtta accatgctaa acgaataaca tcaagcagcc cttttcagaa      4680
     ctctgaaaca gctgctactg aagatctgtt cgatccgaat caaaacanag cttctagtaa      4740
     tcctaagcat cgtgaagaag acggccggga tgataccagc agaataacta agaaaccaag      4800
     acgagaacga cgaatgcctg agtatttgaa agattataat ataaatgaaa tcgactgtta      4860
     agcactttta tattgaatgt tattgaaata aattaaaatt atataaagtt gaggagggg       4919
//
ID   Gypsy-294_AA-LTR repbase;    DNA;    INV; 117 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-294_AA_;
KW   Gypsy-294_AA-I; Gypsy-294_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-117
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2691-2691 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 117 BP; 42 A; 17 C; 23 G; 35 T; 0 other;
     tgtagtaggc cgagaaacat gtatcaatca taggaggcac gtaagatata tgttataata        60
     aatgtcactt tagatccaga gctctaagaa gtaacaagtg ttttattgac ttctaca          117
//
ID   Gypsy-295B_AA-I repbase;    DNA;    INV; 7508 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.01, Created)
DT   26-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-295B_;
KW   Gypsy-295B_AA-I; Gypsy-295B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7508
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7508
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 230-230 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7508 BP; 2203 A; 1826 C; 1997 G; 1477 T; 5 other;
     ctggcgccca actgaaaatc cacaaaattt agtactaccg ttagcgaatt tttggtttgt        60
     gatttagcaa atttggtttt gtgcttttga ttatccggcc ttgataatca acaaaatttt       120
     agcccttacg cataagttaa gatatggatt acacacattt gacggacgaa gaggtcacgt       180
     atgagttggc cctacgtcat gtagttaatt taggacctac cactcataga ggcaaggtct       240
     tacgtctcaa ggcactcatg caagaggagt ccttgcgaga taaccagccc acgagctcat       300
     gccatgtaat gagttcacag tcaaacattg agcactgtga aactcaaata caacagttgc       360
     acatcagcac ggaagcggct attcgcacta acgatagtgc atccttgaat aaaatccgga       420
     cacgtcttaa ccattatcgc gaccgtttgc aattgatccg ccctccggtc gagctgaagg       480
     aaacacatgc tatgttgtgc atgcatgtta acgtgttgtt aagcaaagtg gacggtacaa       540
     gtgtagtgaa tggtgtacaa atgggtgaaa atgcggtgag aaacasaaca tcaactggcg       600
     ctgtgaggag gaacgacaac gactcggaag gagctgttgg aggaatagcg gaagccacaa       660
     tcccagttgg aagcacctct attcaagaca attcaccacc cccagcaccg caaccacctc       720
     tgatgtcatc gttttcgtgt ggacaaggaa gaggactatt gttttctagt tctttccaag       780
     cagaccacga agacagacga caagcggaat caagacggca aagcagttca ccaccccctc       840
     cctacctggc cagggagtwt gcaggatgga atcaacaggc aagagaaacc ccatcacaag       900
     aagcgctgga agtgagaatc agacagatgc aggagagaga agagcggatg cgagaagaat       960
     gccacaggat gcgagaagaa ctggagcggt tgatccggcg agaacgacca gcaccggagc      1020
     gagtagacga gagaaggatg cagaaagcgg tgcataactg gccgttcaag ttccgaggcg      1080
     agaaggacac aacctcactg aacgttttcc tggatcgtgt ggagacgttt gcaaggtcgg      1140
     aaggcatgag cgatgccaca cttctgagct ccatcaagca cttgctgcaa gaggatgcca      1200
     ttgattggta cgcacgagca acctctcagc aactactgcg tacctgggac gactttaaga      1260
     gagagattcg aagagagttc ttgcctagcg gctactcgca aattctgcgt ttggaggcca      1320
     gcttcagatt tcaaggaaga gaggaatcat ttgcgaaata ctatcgcgac atttcggcgc      1380
     tctttcgctt tgtagatcca ccgattccag ccgatgaaaa gttcttccta gtgaaaaaga      1440
     acatgaacga aaactatgcg gctatcgtaa ctgcagcaag gccacgctca ttggaagaaa      1500
     tggtcgaggt ttgcaccgga tacgacgaaa caagaatgct cctgagcagg cagcgccgga      1560
     ttccgattcc acacagtgcg ctactggaac caaacttcgc tacacccgtg tcgaccaaca      1620
     ggccggttct gatgcagcag caacagcctc atcgtttcgg cagagtgcaa gcggtggaaa      1680
     tacaaggaag cgttccggat caagaaatgg tagaggatca agcggaagac aactggcagc      1740
     acaccatcga cgagctggtg gagcaagtca acgcgttgaa gatgagcatg gagcggagaa      1800
     ctacgcggcc tgatttcacg tcaaggaatg aagggcagtc tagattcccg aatagggtcg      1860
     gccgaactga gggggatact gcgcaagcag ggtggcagca gataagagac gcacgctcac      1920
     ccacacaaca acaaagaccg ctgcaagtcg cttcgtatca gccacgacaa acagagcagc      1980
     agcaagatca gtcgcgaatg gttcagaatt ggccagcgcg acagcggata tccggctcgg      2040
     tagaagaggc gcacaacatc aaccggtcag gcagctatct tcaacaagag ccgatgagag      2100
     tcgtcgatcg tcgatttgaa gagcagcaag aagcagcaac ccgtcagcaa ctggccttgg      2160
     tttgctggaa ttgcgacgag gaaggccata gattcacgga ctgtccaaaa ccgcaagcga      2220
     tcctgttctg ctaccggtgt ggacgcaaag gctactcgtt acgcagttgt ttcacttgcc      2280
     gcacagccgc gggaaactac ccagcggaga accagcagta gaggggagca gctctccgca      2340
     cattctcgga gacccctccg acatcccaga atttaaaaac ataaactcca tcattataaa      2400
     ccccggaagc gacaatcgac cgcacgccgt catttcagtg ctcggaaaag agctcactgc      2460
     tttgctggac agcggagcaa actgctctct actaggaggc gcagtagtag gattagcaga      2520
     ggaatatggc ctgcagaaag gtaccgtctg tggcggaata aaaacggcag acggcacaaa      2580
     acatagaata acaaatttcg tctatcttcc catcgtatac aacaaccgca acgaagttct      2640
     tccagtgcta ctggtgccct ccattccgga ctgcatcatt ctcggaatga acttctggga      2700
     aaagtttgga gttaaagcgg tgtgttgcac agtcgaatcc cagcaggaag aggaagaagg      2760
     cagcgaagaa caagagatga agcagctgaa tcccgagcag aagaggcgtc tagagcaggc      2820
     gatccaaaag ctcccgaaag cggttgaagg caagctagga cgtaccaggc tgtacgagca      2880
     ccgaatagac gtaggaaacg caccgccwcg gaagcaacgg cattacccca tgtcgccgta      2940
     tgttctgcag gaggtgaata gagagatcga ccggatgata gcgctggacg tgatcgaaga      3000
     ggcgcagttc tcgccatgga acaacccgct ggtcgccgtc aagaagaaga ctgggcagta      3060
     tcgcgtttgc ttggacgcta gacacctcaa ctccatcatg gtgaacgagg gctacccgat      3120
     tccccagatc gcggcgatta ccaacaacct ccgaagcagc aagtatatct cgtccatcga      3180
     tctcaaggat gccttctggc aactacctct ccattccggt tcgaggccgc taacagcatt      3240
     caccgtccca tccagaggcc acttccagtt caaggtggtg ccattcggac tatgtacagc      3300
     tagccaagct ctggcgcgac ttatgacaca cctgttcgcc gacttagaac cgctggtatt      3360
     tcattacctc gatgacatca tcatctgctc cgagaccttc gaagaacacg tagcacttct      3420
     tgaagaagtt gcccgccggc tatgccaagc aaatctcacg atttcggcgg aaaaatccaa      3480
     gttctgcagg aagagcatga agtacctcgg ctacgtgatt gacgagcaag gctggcgtgt      3540
     agatgatgag aagatccaag cgatcgtgca gtttccaact ccaacgacaa ggaaagaagt      3600
     acagcgtttt ctcggtgtct gcaattggta ccgacgcttt atcgccggat tctcgcaact      3660
     ggcggctccg ttaacgaact tgacgtcagg caaggccaag ttccgctgga atccgatcgc      3720
     cgaagaagcg ttcctcaaac taaaagcagc cctagtttcg gcgccggtgc tagcgatgcc      3780
     cgactacagc aagccattcg ccatagcgtg cgatgccagt gatactgcaa ttggagcggt      3840
     gctaacgcag gagattaacg acgaggagca cccaatcagc tacttctcgc agaagctgtc      3900
     agcgtcggaa agaaaatact cggtcacaga gcgggagtgt ctcgctgtga tccgagcaat      3960
     cgagaagttc agggcgtatg tggaaggaat ccggttcatc gtgtactgcg atcatgcggc      4020
     gctcagctac ctaaagtcca tgaagaaccc gacggcgctg atgagtcgtt ggctgttgcg      4080
     tctgaacgcg ttcgactttg agatccgata caggaaggga tctatcaacg ttgttccaga      4140
     tgctctttcg agaacggtag cagaagcggt gtttaccgta gatcaggtgc aagatccgtg      4200
     gtacagaaag ctggtggaga aggtgaaaag cgaaggagat cagttcccgg actttcgcat      4260
     agcaaacgac acgctgttca aaaactgccg ctgtaagaac gaagtcggag cagtctgcca      4320
     caagtggaag caggtcatcc cgaaagaaga aagattccag ctgatccgaa gatttcacga      4380
     cgaaccggca gctgcgcatc ttggcttcta caagacctgg cacaaaatac aagcccacta      4440
     ttactggccg cagatgcagc aggagattag tgattatgtc aggaactgtg cgacctgcaa      4500
     agcatgcaaa gcaccgggga gtagaatgac gccgcagatg ggaaacccga agccggcgaa      4560
     aacaccatgg gagatgatat cagtggactt tattggtcca ctcacacgtt ccaaacgagg      4620
     aaacacagtg ctattggtgg tagtagattg ggtcagcaaa tacgtgatcg ccaagccaat      4680
     gcgcgcagcg gattcaaaga aaatggtgga gttcctggag gaagaggtgt gcctgaagtt      4740
     ctcgcgtcca cggctgatat tgtccgacaa tgggaagcag ttcgaatcga tggtcttcaa      4800
     gtcctggctg gcgaagaaca agatcggcca catgaagacg gctttctact gcccacaggt      4860
     caacaacgcg gagcgcgtta accgcgtcgt agtcacctgc atccgagcgt tgctggacgg      4920
     cgatcatcga gagtgggacg agaagctacc ggcaatcacg gcagcaatca acgcggccag      4980
     gcatgaggca acgggtgtga gtccgcacga agcgaatttc ggacgaaacc tactgctaca      5040
     cacggacctc tacacgcagc aagaactgaa cacgccggaa gaccctaaag ttgcgcaaga      5100
     tctacggcta tcaamgattc gccgaataca gaagctgatc atcgatcgca tcaaaaacag      5160
     ccaccagcgg gcgaaacagc gatacaacct ccgaacaaga ttagtggcgt tcaaagtcgg      5220
     agatctggtg tggcgtcgaa cgttcatcct ctcatcgaaa gcggaccaga tcaacagcaa      5280
     gctggagccg aaattcgttc cggcaatagt gaaggagatc ctcgggacga acttgtacct      5340
     gctggaggac gtgatgagtg ggaagaaagg cagattccat gcgaaggaca ttaaagcgga      5400
     ttaagcgtaa agtgtaaagc tatgtacgca ggcagtgcct gtcaaccaag aagcgaaagc      5460
     tgacaaaaac accaaatggg agcagtgaca acgagcagag gcgagcacag tatccacaat      5520
     tccgcttcgc ctcagctaga ccgattagga gatttctgta aggatttccg ttcacccgaa      5580
     cgaggttccg aaaccatcaa gctatgtaca caggcggtgc ctgttaacca taattagtag      5640
     cagtcggaaa caccaatcac cgggatgttt gaccacgaat gctgagagag agaacttgct      5700
     acaacaatgc tccacttcag caatatcgag caagacgaag acaaggattt ccgttcatcc      5760
     gagcgaggtt ccacaatgct aaagctatgt ccacaggcac agcctgtcaa ccattagtac      5820
     catacttcaa aacacgtacc aagcgggaaa atggcaaaag tcaggtgtga tgagcaacaa      5880
     cttcttaacg actacctctc cacctcgacg attcgtcagt ttcgttgtag aacacgatct      5940
     tcgccaaaag attgaacacg atttgcgacc acgtcaagca gagaagagaa ccaacatgcg      6000
     gtacaaaaac acttccatcg cgccaggagg tgtaccgtgc gccgttcgcg aaacgggaga      6060
     aatcgcaccc tacgtcactg gaaacgggga gtagggatct cggcaatgca ccagatgcat      6120
     tctctgatag gaggagtgga gacccggaga tcgacgacca aaaatcggtt cgacgcggag      6180
     ttgaagctta cggccactat cgggcgcagt gagacagcag ctggagggca ttgagaggag      6240
     gaggacgtaa ctggagccta cgaagggcac gggagattgg aaccctgaaa accatcgtga      6300
     gtagggaggc tccaaagacc atcacgaaga agcagaaaag caagcagcct acggaaggca      6360
     cgggagattg gaaccctgaa aacagccggg agtagggagg ctccaaatac cagttcgaag      6420
     aaacgcaaac gtaagcagcc tacggaaggc acgggagatt ggaaccctga aaacaatcgt      6480
     gagtagggtg gctccaaata ccatcatgat gaagcggaag aacaagcagc ctacggaagg      6540
     cacgggagat tgggaccctg aaaaccattg tgagtaagga ggctccaaat accatcagat      6600
     agagcggaag aagcacgtag cctacgtcag gcatgggaga ctgggacccc gaagtccaca      6660
     atagggaggc tccagacacc agaaagtgaa gcgcaccgta gaccgcgatc aaacgcaagc      6720
     aacatcatca agctatgtcc gcagcgagct gccaaccaag tataggaaac cccacatcaa      6780
     aacacaccaa gtggtcatgc cgttcgccga acgagataaa tcgagcccac catcaagatt      6840
     cgaccaccca ctacactaca agactggata agtgcacaca aaccctcaag tgtttccagt      6900
     cgattcaaat gcgtggccaa gggttaaaga tctgggggtc gtcatgaaat cttcatccca      6960
     aggtaacgcg accaggggcg cggtaaaacc ccatttttgg gctcatgacg atttagtcgc      7020
     ggaaatgctt cttttctcag ttttaagcac aaaccaaaac aaacsaattc agtccttgta      7080
     aaattctgta aatatagctt cttcgtttag tgtgcgattc agcctattct agtcaataca      7140
     ataggctaga atccgatttg aatgttttgc cgtagtttga gcgggttggt ggaagctgga      7200
     caaggacttt ggtcagagac gatttgagag gtcgaagatt ctgccaggcg cagctggcgt      7260
     agtatcaagt ctagaattag gatatgatgt ttagacgata gtggagattt gatttggcaa      7320
     gcaaccaagg cttgcggata ggagtttatt tattgaaaga atcagaaata acttgaggtc      7380
     tgctcaaggg tttagttgac cgacttgtct ctgaccatca tcctaggagg atgatcgaag      7440
     atttgtgaat ttttcataaa tcgtttgatc atcgatttat gaaaaattct tccgctacgg      7500
     tagagttg                                                               7508
//
ID   Gypsy-295B_AA-LTR repbase;    DNA;    INV; 1570 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.01, Created)
DT   26-APR-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-295B_;
KW   Gypsy-295B_AA-I; Gypsy-295B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1570
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1570
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 232-232 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1570 BP; 441 A; 356 C; 437 G; 336 T; 0 other;
     tgttacgttt agtttatgtg agctaaggat tattagatat tatcatgaga ataaacacta        60
     tgtaatgcaa catctgaaat atagaggtcg cagtgtgcct cccattagca cacccctgaa       120
     cgaaaagcct ttttcgcaca cgcacatacc atcgcatcaa tcgataacta gcaaaacacc       180
     gactgaaatg ttcgtgcaaa ccaacattgc acacacacag aggtgcatga gcgatcgcaa       240
     aatctgcacc acaccgcagc taggagacag aaaccgtttg gccggaaagt ggaaaagtcg       300
     ccattgttcg ctcgtcgcga aaaagtgaaa aatcaaaaag tgggcagtcg cctgtaacaa       360
     atttccggga ttccgcacct gtagcgacag ccagcaataa gggtagctgc gatcggttga       420
     gcccttcgat tccagaaacg ctgtgtgtag atttttctcg ctcgaaggcg cacgaattga       480
     aggtgagtgc tttgtggaag ccacgtggat ttaaccaaaa aacctcacac ggactgacgt       540
     gccatttcaa tcctctaata ggccgcattt tcggaacaaa caattggggc tgaagccgaa       600
     agaaacttcc gacgcacgat ttgggaggaa aagccagccc aagcgatcgc tcccaatcta       660
     cgctccgttg gtgaaccgaa tcccgtgagc aacgacggac attcggtcgt acacgaagaa       720
     gacaacagac cccttaaagg gtgagtttca ttgtaagagt tcaaaatcgg ccaaacgctg       780
     atggcaacga tgcgcagggt ttttatttgt acttatagac tgattcgtcc ggtcgctaga       840
     cggattgcct cggagaaagg agagccaccg gcgcgcttcg gtgtgaacca tcattccggc       900
     atcgtgttcg gaagacaaac ggtgtggtcg ggccagagga agcggctgca aggaacaccg       960
     agtgacgagg agcagcgtcg ataccattca ggccgatcag tggaagggga ccggggttgt      1020
     gtcccacgtg aacaacaaca tcattccggc atcgagttcg gaagacaaac ggtgtggtcg      1080
     ggccagagga agcggccgca aggaacaccg agtgaggagg agctgcgtcg ataccattca      1140
     ggccgatcag tggaagggga ccggggtggt gtcccacggg agcaacacgt ccgaaggtcg      1200
     aagtcgtcac cagtcaccca cggtggtccg aatcagcata gttcccgaat caggtgtgcg      1260
     atgtgctcgt gcgttgtgcg accgaggaat gcattgaaga tggtgcgatg cagtaggtca      1320
     ggtagtcact tataggacgg gcccgtaagt aaagaaagat aattagcttg taagaacatg      1380
     atttagtcag gccttgatgc aaaagggggt cgataggagc taggaaggtg ggagaaagct      1440
     cgatgggtgt aataaagtct ttgtaaaatg taagctttat gagttggtgc attttgcctt      1500
     tgagtgttga ttgccgaaat acttccgcat atgatagttc tgctctaccg ctaccgggga      1560
     acttgcaaca                                                             1570
//
ID   Gypsy-295_AA-I repbase;    DNA;    INV; 7634 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-295_AA_;
KW   Gypsy-295_AA-LTR; Gypsy-295_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7634
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2692-2692 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2976-3479] - Reverse transcriptase
CC   Positions [4548-5024] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           928..2319
FT                 /product="Gypsy-295_AA-I_1p"
FT                 /translation="MQEREERMREECHRMREELERLIRRERPAPERVDERR
FT                 MQKAVHNWPFKFRGEKDTTSLNVFLDRVETFARSEGMSDATLLSSIKHLLQ
FT                 EDAIDWYARAASQQLLRTWDDFKREIRREFLPSGYSQILRLEASFRFQGRE
FT                 ESFAKYYRDISALFRFVDPPIPADEKFFLVKKNMNENYAAIVTAARPRSLE
FT                 EMVEVCTGYDETRMLLNRQRRIPIPHSALLEPNFATPVATNRPTPIQQQQH
FT                 PQRFSRVHAVEIQDSAPSFETPEDQDEDHWQHTIDELAEQVNALKMNLERR
FT                 TTRQNFTPGNGRQHRFPDRFNRTEGDSSPVMRQQLRDTHIPVQQQRSQVTP
FT                 YQPRQPEQQQEQPQRMQNWQARQWKPSSLEGPQNYNQRNNSFQQEPLRLVD
FT                 RQSDEQQEADNQQRLVLVCWNCDEEGHRFMDCPKPQAILFCYRCGRKGYSL
FT                 RSCFTCRTGAVNYPAENQQ"
FT   CDS           2277..5396
FT                 /product="Gypsy-295_AA-I_2p"
FT                 /translation="MPHRCGKLPSGEPAIEGSSSPHSIGNPSDIPEFRNLN
FT                 SLIINLGSDNRPHAVISVLGKELTALLDSGANCSLLGGNKANLAEECGLQR
FT                 GTVKGGIKTADGTKHKITNFVYLPIVYNNRNEVLPVLLVPSIPDCIILGMN
FT                 FWDKFGVKAVCCAMEAEQEHKGGEEQMKQLTPEQKKQLEQAIRKFPRAVEG
FT                 TLGRTKLYEHHIDVGNAPPRKQRHYPMSPYVLQEVNREIDRMIALDVIEEA
FT                 QFSPWNNPLVAVKKKTGQYRVCLDARHLNSVMVNEGYPIPQIAAITNNLRS
FT                 SKYISSIDLKDAFWQLPLHPQSRPLTAFTVPSRGHFQFKVVPFGLCTASQA
FT                 LARLMTHLFADLEPLVFHYLDDIIICSETFEEHIALLEEVARRLRQANLTI
FT                 SSEKSMFCRKSMKYLGYVIDERGWRVDDEKIQAIVQFPTPNTRKEVQRFLG
FT                 VCNWYRRFIAGFSQLASPLTNLTSAKTKFRWNPVAEEAFLKLKAALVSAPV
FT                 LAMPDYSKPFAIACDASDTAIGAVLTQETDGEEHPIGYFSQKLSASERKYS
FT                 VTERECLAVIRAIEKFRAYVEGIRFVVHCDHAALSYLKSMKNPTALMSRWL
FT                 LRLNAFDFEIRYRKGSINVVPDALSRTVAEAVFTVNQVQDPWYKKLVERVQ
FT                 TEGERFPDFRIANNTLFKNCRCKDEVGAVFHRWKQVVPKEERLQLIRRFHD
FT                 EPASAHLGLYKTWHKLQAHYYWPQMQQEISDYVRSCPTCKACKAPGTKMMP
FT                 QMGNPKPAKIPWEMISVDFVGPLTRSKRGNTVLLVVVDWVSKYVIVKPMRA
FT                 ADSQKMVDFLEEEVCLKFSRPRLILSDNGKQFESMVFKSWLAKNKIGHMKT
FT                 AFYCPQVNNAERVNRVVVTCIRALLDGDHREWDEKLPAITAAINAARHEAT
FT                 GVSPHEANFGRHLLLHTDLYTQQELNTPEDPKVAQDLRLSTIRRIQKLIID
FT                 RIKNSHQRAKQRYNLRTRLKAFKVGDLVWRRTFVLSSKADQINSKLEPKFV
FT                 PAIVKEILGTNLYLLEDVMSGKKGRFHAKDIKAD"
XX
SQ   Sequence 7634 BP; 2233 A; 1882 C; 2031 G; 1477 T; 11 other;
     ctggcgccca acgtggggat ccacgaaatt tagtactacc gttagcgaat ttttggtttg        60
     tgatttagca aatttggttt tgtgcttttg attatccggc cttgataatc aacaaaattt       120
     tagcccttac gcataagtta agatatggat tacacacatt tgacggacga agaggtcacg       180
     tatgagttgg ccctacgtca tgtagttaat ttaggaccta ccactcatag aggcaaggtc       240
     ttacgtctca aggcactcat gcaagaggag tccttgcgag ataaccagcc cacgagctca       300
     tgccatgtaa tgagttcaca gtcaaacatt gagcactgtg aaactcaaat acaacagttg       360
     cacatcagca cggaagcggc tattcgcact aacgatagtg catccttgaa taaaatccgg       420
     acacgtctta accattatcg cgaccgtttg caattgatcc gccctccggt cgagctgaag       480
     gaaacacatg ctatgttgtc catgcatgtt aacgtgttgt taagcaaagt ggacggtaca       540
     agtgtagtga atggtgtaca aatgggtgaa aatgcggtga gaaacacaac atcaactggc       600
     gctgtgagga ggaacgacaa cgactcggaa ggagctgttg gaggaacagc ggaagccaca       660
     atcccagttg gaagcacctc tnttcaagac aattcaccac ccccagcacc gcaaccacct       720
     ctgatgtcat cgttttcgtg tggncaagga agaggactat tgttttccag ttntttccaa       780
     gcagaccacg aagacagacg acaagcggaa tcaagacggc aaagcagttc accaccccct       840
     ccctacctgg ccagggagta tgcaggatgg aatcaacang caagagaaac nccatcacaa       900
     gaagcgctgg aagtgagaat cagacagatg caggagagag aagagcggat gcgagaagaa       960
     tgccacagga tgcgagaaga actggagcgg ttgatccggc gagaacgacc agcaccggag      1020
     cgagtagacg agagaaggat gcagaaagcg gtgcacaact ggccgttcaa gttccgaggc      1080
     gagaaggaca caacctcact gaacgttttc ctggatcgtg tggagacgtt tgcaaggtcg      1140
     gaaggcatga gcgatgccac acttctgagc tccatcaagc acctgctgca agaggatgcc      1200
     attgactggt acgcacgagc agcctctcag caactactgc gtacctggga cgacttcaag      1260
     agagagattc gaagagagtt cttgccnagc ggctactcgc aaattctgcg nttggaggcc      1320
     agcttcagat ttcaaggaag agaggaatcg tttgcgaaat actatcgcga catttcngcg      1380
     ctctttcgct ttgtggatcc accgattccg gccgatgaga agttcttcct ggtgaagaag      1440
     aacatgaacg aaaactatgc ggccatcgta acngcagcna ggccncgctc attggaagaa      1500
     atggtcgagg tgtgcaccgg atacgacgag acgaggatgc ttctgaacag acagcgtagg      1560
     attccgattc cacacagtgc gttgctggaa ccgaacttcg ctacgcctgt ggcgaccaac      1620
     agaccgactc caatacagca gcaacaacat cctcaacgct tcagcagagt ccatgcggtg      1680
     gaaattcaag atagcgctcc tagtttcgag acaccagaag atcaggacga agaccattgg      1740
     cagcacacca tcgacgagtt ggcagagcaa gtcaacgcgt tgaagatgaa cttggagcgg      1800
     agaactacgc gacaaaattt cacgccaggc aacggaaggc agcatcggtt tccggatagg      1860
     ttcaatcgta ccgagggaga cagctcacct gtaatgcgac agcagttgag agacacgcac      1920
     atacccgtgc agcagcaacg gtcgcaagtt actccgtacc agccacggca accagagcag      1980
     cagcaagagc agccacaaag gatgcagaac tggcaagcgc gacaatggaa accaagctcg      2040
     ctggaaggtc cgcaaaacta caaccagcga aacaactctt ttcagcaaga gccactaaga      2100
     ctggtagatc gccaatcaga tgaacaacag gaagcagaca accagcaacg actggtactg      2160
     gtttgctgga actgcgatga ggaaggccat aggtttatgg attgtccaaa gccgcaagcg      2220
     atccttttct gctatcggtg tggacgaaaa ggctactcgt tacgcagctg ctttacatgc      2280
     cgcacaggtg cggtaaacta cccagcggag aaccagcaat agaggggagc agctctccgc      2340
     acagtatcgg aaacccctcc gatattccag aatttcgaaa cctgaactcg ttaataatca      2400
     atcttggaag cgacaatcga ccgcacgccg tcatatcggt gttagggaag gagttaaccg      2460
     ctttgctaga cagcggagca aactgctctc tgctaggagg aaataaggcc aatctggcag      2520
     aggagtgcgg actacagaga ggaaccgtca agggcggaat aaaaacggcg gacggcacga      2580
     agcataaaat caccaatttc gtctatcttc ccattgtgta caacaaccgc aacgaagtgc      2640
     ttccagtact gctggtaccc tcgatcccgg actgcatcat cttgggaatg aacttctggg      2700
     acaagttcgg agtaaaggca gtctgttgcg caatggaagc agaacaggaa cacaaaggcg      2760
     gcgaggaaca gatgaagcag ctgacgccgg agcaaaagaa gcagttggag caggcaatcc      2820
     ggaaatttcc tagagctgta gagggaacgc tgggtcgcac gaagttatac gagcatcaca      2880
     tcgacgtagg caacgcacca cctcgcaagc aacggcatta tcccatgtcg ccgtatgttc      2940
     tgcaggaggt gaacagggag atcgaccgaa tgatcgcact cgatgtcatc gaggaggcac      3000
     agttctcgcc gtggaacaat ccactagtcg ccgtgaaaaa gaagactggg caatatcgcg      3060
     tctgcctgga tgcccgtcac ctaaattccg tcatggtaaa tgaaggctac ccaattccgc      3120
     agatagcagc gatcaccaac aacctccgaa gcagcaaata catctcgtcg atcgatctca      3180
     aagatgcttt ctggcagcta ccgctccatc cacaatcgag accgctgacg gcgttcaccg      3240
     ttccatccag aggccacttt caattcaaag tggtgccttt cggactgtgt acggccagcc      3300
     aagctctagc gcggctcatg acgcacctgt tcgctgatct agagccgctg gtattccact      3360
     acttagacga cataatcatc tgctcggaga ccttcgaaga gcacatcgct ctgctcgaag      3420
     aagtagcacg ccggctacga caagcgaatc tcacgatctc ttcggagaag tccatgttct      3480
     gcaggaagag catgaaatac ctaggctacg tgatcgacga gcgaggttgg cgagtagatg      3540
     acgaaaagat tcaggccatc gtacagttcc ccactccaaa tacccggaaa gaagtgcagc      3600
     ggttcctagg tgtctgcaac tggtaccgac gcttcatcgc aggattctcg cagttggcat      3660
     caccgctcac gaacctaaca tcggccaaga cgaagttccg gtggaatcca gtagctgaag      3720
     aagccttcct caagctgaaa gcagctctgg tctctgcccc ggtactagcg atgccggact      3780
     acagcaaacc gttcgcgata gcgtgcgatg ccagcgacac agcgatcgga gcagtgctaa      3840
     cacaagagac cgacggcgaa gaacatccga tcggatactt ctcgcagaaa ttgtcagcgt      3900
     cggagaggaa gtactccgtc acggagcggg agtgtctcgc ggtgatccga gcgatcgaaa      3960
     agttcagagc ctatgtggaa ggaatcaggt tcgtcgtcca ttgcgatcac gcagcgctca      4020
     gctacttgaa gtcgatgaag aacccaacgg ccttgatgag ccgatggctg ttgcggctga      4080
     atgcgttcga cttcgaaatt cggtaccgga aaggttctat caacgtggta ccggatgctc      4140
     tgtcgagaac ggtagcagaa gcagtattca ccgtaaacca ggtgcaggat ccgtggtaca      4200
     agaagctggt ggagagagtg cagactgaag gcgagcggtt tccagacttc cgaatcgcaa      4260
     acaacacctt gttcaagaac tgccgctgca aggacgaggt cggagcagta ttccacaggt      4320
     ggaagcaggt ggtacccaag gaagaaaggt tgcagctgat ccggagattc cacgacgaac      4380
     cggcgtccgc gcatttaggc ctctacaaaa catggcacaa gctacaagcc cactactatt      4440
     ggccgcagat gcagcaggaa atcagcgatt acgtgaggag ctgtccgact tgcaaagcgt      4500
     gcaaggcacc tggaacgaag atgatgccgc aaatggggaa tcccaagccg gcgaagatcc      4560
     cgtgggagat gatatcggtg gactttgtcg gtccgctcac tcgttccaag cgcgggaaca      4620
     cggtattgtt ggtggtagta gattgggtca gcaaatacgt gatcgtcaag ccaatgcgcg      4680
     cagcagattc acagaaaatg gtggatttcc tggaagaaga ggtgtgcctg aagttctcgc      4740
     gtccacggct gatattgtcc gacaatggga agcagttcga atcgatggtc ttcaagtcct      4800
     ggctggcgaa gaacaagatc ggccacatga agacagcttt ctactgccca caggtcaaca      4860
     acgcggagcg cgttaaccgc gtcgtagtca cctgcatccg agcattgctg gacggcgatc      4920
     atcgagagtg ggacgagaag ctaccggcaa tcacggcagc gatcaacgcg gccaggcacg      4980
     aggcaacggg tgtgagtccg cacgaagcga atttcggacg acacctactg ctacacacgg      5040
     acctctacac gcagcaagaa ctgaacacgc cggaagaccc aaaagttgcg caggatctac      5100
     ggctatcaac gattcgccga atacagaagc tgatcatcga tcgcatcaaa aacagccacc      5160
     agcgggcgaa acaacgatac aacctccgca caagattaaa ggcgtttaaa gtcggagatc      5220
     tggtgtggcg tcgaacgttc gtcctctcat cgaaagcgga ccagatcaac agcaagctgg      5280
     agccgaaatt cgttccggca atagtgaagg agatcctcgg gacgaacttg tacctgctgg      5340
     aggacgtgat gagtgggaag aaaggcagat tccatgcgaa ggacattaaa gcggattaag      5400
     cgtaaggtgt aaagctatgt acgcaggcag tgcctgtcaa ccaagaagcg aaagctgaca      5460
     aaaacaccaa atgggagcag tgacaacgag cagaggcgag cacagtatcc acaattctgc      5520
     ttcgcctcag ctataccgat taggagattt ctgtaaggat ttccgttcaa acgaacgagg      5580
     ttccgaaacg ttcaagctat gcacgcaggc ggtgcctgtt aaccagaatc ggtagcagtc      5640
     gaaaacacca atcactggga gatttgacca cgaatgctga gagtgagatc ccgctacaac      5700
     acgctccagt tcagcaaccc taatcaagac tggcaaggat ttccgtttat ccgagcgagg      5760
     ttccacgacg ataaagctat gtccacaggc gaagcctgtc aacgattagt accatactcc      5820
     aaaacacgta ccaagcggaa aaatggcaaa agatcaggtg tgatgagcaa caacttctta      5880
     acgactacct ctccaccacg acggttcgtc agcttcgttg tagccaacga tcttcgccaa      5940
     aagagtgaac acgattcgcg accacatcaa gcggggaaga gaaccaaaat gcggtacaca      6000
     aacgcttcca tcgcgccagg aggtgtaccg tgcgccgttc gcgaagcggg agaaatcgca      6060
     ccctacgtca ctgggaacgg ggagtaggga tctcggcaat gcaccagatg tattctctga      6120
     taggaggagc ggagacccgg agatcgacga ccaaaaatcg gttcgacgcg gagttgaagc      6180
     ttacggccac tatcgggcgc agcgagacag caactggacg gcattgagag gaggacgtaa      6240
     ttagagccta ctgaagggct cgggagattg gaaccctgaa aaccatcgtg agtagggagg      6300
     ctccaaagac catcatcaag aagcggacaa gcaagcagcc tacggaaggg cacgggagat      6360
     tggaaccctg aaaaccatcg tgagtaggga ggctccaaat accatcatca agaagcggac      6420
     aagcaagcag cctacggaag gcacgggaga ttggaaccct gaaaaccata gtgagtaggg      6480
     tggctccaaa taccatcatc aagaagcgga caagcaagca gcctacggaa ggcacgggag      6540
     attggaaccc tgaaaaccat agtgagtagg gaggctccaa ataccatcat caagaagcgg      6600
     tcaagtaagc agcctacgaa gggcacggga gattggaacc ctgaaaacca tcgtgagtag      6660
     ggaggctcca aataccatca tcaagaagcg gacaagcaag cagcctatgt caggcgtggg      6720
     agactgtgac cccgaagtcc acaataggga gactccagat accagaaata gacagcgagc      6780
     aaagtgcatc gtagaccata tccacagcga gctgccaacc aagtagagga agccccacac      6840
     caaaacacac caaatggtca tgccgttcgc cgaacgagat aaatcgagca caccatctag      6900
     attcgaccac ccactacaca gagctatgag tggcacaact acaaagacac aaaacacgat      6960
     cacggtaatc caagcacatc caagactgga tgagtgcaca caaaccctca agtgtttcca      7020
     gtcaattcaa atgcgtggcc aagggttaaa gatctggggg tcgtcatgaa atcttcatcc      7080
     caaggtaacg cgaccagggg cgcggtaaaa ccccattctc gggctcatga cgatttagtc      7140
     gcggaaatgc ttcttttctc agttttatgc acaaaccaaa acaaaccaat ttagtccttg      7200
     taaaaagttt gtaaatatag cttctatgtt tagtgtgcga ttaagcctat tttagccaat      7260
     acaataggct agaatccgat ttgaatgttt tgccgtagtt tgctcggatt tgtagaagct      7320
     ggacaaggac tttggtcaga gacgatttga gaggtcgaag attctgccag gcgcagctgg      7380
     cgtgatattg agtctaggat taaggttatg cagtttaggt gatttgattt ggcaagcaac      7440
     caaggcttgc gtatatgagt ttagtttacg gtataaggtt aaagaaccag aagtaacttg      7500
     aggtctgctc aagcgtttag ttgaccgact tgtctctgac catcatccta ggaggatgat      7560
     tgaaaatttt gtgaattttt cataaatcgt ttgatcatcg atttatgaaa aattcttccg      7620
     ctacggtaga gttg                                                        7634
//
ID   Gypsy-295_AA-LTR repbase;    DNA;    INV; 1684 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-295_AA_;
KW   Gypsy-295_AA-I; Gypsy-295_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1684
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2693-2693 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1684 BP; 453 A; 415 C; 485 G; 331 T; 0 other;
     tgttacgttt agattagttt ggttatcgta acaaaattaa gcttgtaaag acaaaactca        60
     attccttgta aaacctacga aattagaatt tgtcgccacg cacgcctaca tcaaaaaaca       120
     cttattgcca tgctgcacca taataacaac ggaaaacgga ggatatcatt cgttccgtgc       180
     atatcgcttt cgaacaacaa ccgccgattc aaaacaccgg tcgctaaaag ccttttcaaa       240
     tcagcggtac ggaccagcac cgccaagcgg agaaagcgag aatctcgaaa acgtcactat       300
     ccccgacaag tgacagctgc aggactccgt cgaaggccct gccacgccat cgccattcgt       360
     ccagttcgct cgatcgagtt ggtcgcgaca tcgcgtgtga aacaggaatc atcctctggc       420
     cacaatcgga aaccaaccga ggacacgggc ctacgatcca atcgacgtaa gccaatcaga       480
     acctgctcaa gaatgtgcaa taatcagatt cccgttctgc agacgtaaga ctcggcatcg       540
     tcacaccacg aggccggcag tagacgtcca gagccgccat tttgccggac tgcgatttca       600
     ccgggtctag cactaagttg accgtgcggc caattggagg acgagagcag gccatcacta       660
     cggtcaccaa tcgcttccat cgcgccagga agtagaccgt gcgccgttca cgatacggga       720
     gaaatcgtac cctgtgatcc tggaaacggg agcagggaac tcgccagtgc accggatagt       780
     gtcctggatg ggaggagcgg agacccggag ttcgacgacc aaaaatcggt tcggcgcgga       840
     gttgaggctt aaggccacca tcaggcgcaa cggggtatca tttggagagc actgggagtg       900
     gcagctggtc cagaaggagt cggtcggtga gtacgagatt atcacgaaga gaagtgaccc       960
     cttattgagt ttgcgctgta ccgtaggtga atcgcggcgc gcagattcgc accaagctga      1020
     ccgtgcggcc gattggaggg cgagagtcgg caatcactgc cgggaacggc acgaagcaaa      1080
     aaccccagaa agggtaggtc acaacgcaat ccgtaacgcc agcacagcct aaccggtcgt      1140
     ggacggggtt tttgtttttg atttccagtt tcatcattcc gctcgctgca gcaagtcgac      1200
     cgggaattca cgaacgacac gacgcgccaa ggcctctcgg acggccggta gtcgattgag      1260
     gaagcatcgc cggagaattg cccatcggcg aatgacggca gcgagaatcg gtgaggagtc      1320
     gaggaccagt cggaccgccc cggtcggagc gaatccggga gcgcgaattg aacgcgggtg      1380
     cgggtgcgat cgaaggaagg caccgaggaa tgaggtgcag aggcgtggcg gctggtagga      1440
     aggggcgccc catgaagtag taagtaagaa aagaagaatg caagtagaag tttaagagaa      1500
     aaggtagtag gagaaggaat gtaggaagta gaagagagga aatgggtgag tgaacccaaa      1560
     atatatgtat taaattgagt tttggcactg tttttcggat ttgttggtgc tgtggccctc      1620
     cagtctttgt gtgattcgct tttcggtggt tttcgctcta ccttctaccg gagaattcgc      1680
     aaca                                                                   1684
//
ID   Gypsy-296_AA-I repbase;    DNA;    INV; 5817 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-296_AA_;
KW   Gypsy-296_AA-LTR; Gypsy-296_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5817
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2694-2694 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3139-3672] - Reverse transcriptase
CC   Positions [4762-5229] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3097..5724
FT                 /product="Gypsy-296_AA-I_1p"
FT                 /translation="METKVESKIQEMLLSDVIEPVVGPPEWISPMVVVPKG
FT                 KDDIRLCINMKYPNQAIQREHYPLPMIDTLLNKLRGSTYFSKLDITSAFHH
FT                 IELHPDSRGITTFMTSKGLMRYKRLMFGINCAPEIFQRVMCEMLAGIEGVI
FT                 VYIDDVVVAGETKEQHDSRLEEVLSVLRKNNAMLNKQKCLIGVKQLEILGY
FT                 NVSGAGISPSDDKIAAIRNFRKPETKEEARSFLGLINFVGQFIPNLSTRTE
FT                 PLRRFIRGDVSVFGEDQETAFNDLRNELSSTVRRLGFYDTKDETDLYVDAS
FT                 PVGLGAVLTQRDTFGTPRIISFASKGLTKAERIYPQTQREALAVVWAVEKF
FT                 YPYLFGTCFNIFTDHKTLEYIYGGKHRDGKRACTRAEGWALRLQPYNFRIK
FT                 HIPGPTNISDVLSRLCPQSESDIPFDEESEHYLCAIDDGLDAITLEEIQYE
FT                 TTSDETLCAVIEALRSGVWPSTLIHYQSFAKEIGVINGIVVRDVRIVLPVK
FT                 LRPRALDIAHRGHPGAVSMRRNLREHVWWPYMDRDVGDRIQECAGCAAVST
FT                 QGPPEPMARKEMPDRAWQEIAIDFFSAKECATFLVIVDYYSRFLKVIEMKS
FT                 TTASKTIEALEPVFLEQTYPETIRSDNGPPFSSEEFLSYCKRRNIRLIRTI
FT                 PYWPQMNGLVERQNQGILRALRIAKAVKADWRKAVRDYVHMYNTSPHTMTG
FT                 KPPLELMTGRPVKDLLPSLRTEPYWNRDAEVRDEDAIKKMKGKLYSDNRRR
FT                 AKESEIIEGDTVLLRNHETGKLEPKFRLEKFKVIKKTGSDTIVANDEGVRY
FT                 RRPVSHLIKWGGKSLGSTSGAPREDETQIPLPPVETSIQDHPMSEESKLET
FT                 NNGNNQPKVNRPKRIRKLPIRYN"
XX
SQ   Sequence 5817 BP; 1791 A; 1109 C; 1408 G; 1504 T; 5 other;
     attggcgcag ccggtaggan ataaggtgag tgtagtgcaa ttgctcgtac tctgtgattt        60
     atgccgtatt cggtaaaatt tggttcaatt ttttttttga ctcggaaaat tgagtgcatg       120
     cttgacctgt tgctgccaag caccgggcat ttaagtttct gcattttgga cgctttggat       180
     tttattggga agtggaaaat aaatagggac tcttttgtgc gttaccaagc gccgctggag       240
     atatttttgg cagcatgaaa ttgtagaatg aaaaccacgc attttacaaa atggcgacag       300
     atgagcgtca ggcaaatttc attcgtagcg tatgagtgta tgagcgtgtg tagctgctga       360
     aactttacgc atacattgga aggccagcag ttttagtaca tggattgtga ttataggaaa       420
     cgtgaaagca aggccgggtg tgtgttgtga tgaacagatg gcaagtccgg ttgataaccg       480
     tagtgcctag tgcaggcctg gtagcgagtc actttttagt tacttggtca cttttcagtg       540
     aatttgtcat ttcttctcga cttgatcgct caaagcatct atttgcaaaa aaaaaggttt       600
     tcaaagtctt tttcttttca taaaatgact actagtcacc attactttgc tattattctg       660
     ctaccagccc tgctagtgag aagaaaagcg agtctgactg aaagtcaaag cgcaccaata       720
     caaatggcaa gtccggttga cgaccgtagt gctagtgaag aaaagcgagt ctgactgaaa       780
     gtcaaagcgc accaatacaa atggcaagtc cggttgacga ccgtagtgct agtgaagaaa       840
     cgcgagtctg actgaaagtc aaagcgcacc aatacaaatg gcaagtccgg ttgacgaccg       900
     tagtgctagt gaagaaaagc gagtctgact gaaagtcaaa gcgcaccaat acaaatggca       960
     agtccggttg acgaccgtag tgctagtgaa gaaaagcgag tctgactgaa agtcaaagcg      1020
     caccaataca aatggcaagt ccggttgacg accgtagtgc tagtgaagaa acgcgagtct      1080
     gactgaaagt caaagcgcac aaatacagat ggcaaatccg gttgacgacc gtagtgctag      1140
     tgaagagaag cgagtctgac tgaaagtcaa agcgcaccaa taacagtccg attttaaaag      1200
     ttggtgtctg gaagtgcgct acagcacact aataaagctc caggtgaaga ccgtagtgcc      1260
     gaggggaggg aaaagcgaat caagcagaaa tttgccaaat gggacagaaa ataaactgga      1320
     tgagtgattg gttgaatgca tttactaaaa tcgatgataa tcgtgcgcat ggaatgtttc      1380
     ggaaatatat atattgagtt ttatctttga tttcattaaa atgacttgtt taaaccttaa      1440
     cggaaattaa aattcaagat tctgtgatgt tttgcaacat tacagtaaaa tattttcaat      1500
     aatttttgtg gaatttgtcc attatttttg cagatggact ccgaaaaaca ctggccactg      1560
     gaatctttta acgaggctgt tgatccttct gatttgcgtc gagaatggga ggaatggctg      1620
     agagcgtttg agcttgttgt tgagttgaag aatgtcgagt cacagcatga taagctagtg      1680
     ttcatgctcg ctagaggtgg gcgaggtctt caacgtatct attataattt gagaccggtc      1740
     gcaagtgaga tccaccctga gccagtgaag attccactat tgccaaagga aataccggaa      1800
     tatgacaatg ccgtgaaacg attgagtagc tttttcatcg gaaagcgaaa tgaacgagtc      1860
     gaattagagg tttttcgttc actgaaacaa acgccagatg aaacattcaa tcaattcatc      1920
     ttgaagcttc ggacacaggc agcccgctgt gattttcaag accgtgagga gcgagagata      1980
     ttgcaacagg tgaccatggg tgcaaaagac gagcgtgttc gagataaagg actcgagaat      2040
     gtgatgaatc ttgatgagct tacaaactac gcgataaatc gggaaatatt ggctaagcaa      2100
     aaaggaaagc agaactcttt caattctgaa caaggaacgt cgtccatttc ttatgtgaag      2160
     caggagagaa gtaccaatgg atcgacaaca tacagaggac ggttcaccct gaaggacagg      2220
     cgtccgaata ttgaatgcga ccgatgtgga tcatggaaac atcgtaagga ctctcgtgac      2280
     tgttatgcac gtaacgcgcg ttgtaacaac tgtggagcaa gaggccattn tccaaggaaa      2340
     tgttcagcat ccggccaagt caagcgaagt gggcctttca gaccaaacca atcgaaacgt      2400
     catcttgatg ctaatgctat ccaagagaat taccgttcta cagcggaggc aactcgctac      2460
     gatcgagcca aatcggagga ctcatggaag gtacagaatc cttgattaca ttttattctg      2520
     atttttttaa ttatctaaat aaaagagggc tagtagaatc cagaaaagaa ttttatttgg      2580
     gagtttacaa atacttatat tttgtttatt gtttggtcat tccaatagga taatatgggt      2640
     aacagtggca tcatcacttg caaaatccat catactccag ttgtcttttt gatagactct      2700
     ggagcagcga taaatacggt aactgaacat gcctgggaca atcttgtcaa gagtaatgcg      2760
     aaactttaca aaaagaagtt tcaatgtgat cgacgtataa cagcgtacgc tagccaagtc      2820
     cctctggaag tattaacgat ctttgaggca tggatctccg ttgatgatag taaaccacgg      2880
     gtgtatgcgg aatttttcgt tgtaaggggt ggccgaaaat cgctattgag taaaagaacg      2940
     gcagaggagc tcaaagtgct aaaagttggg cttgacgtta acaacattga tctaaagagt      3000
     ganagttttc caaaatttcc gaatatacag atcaaattgg ccatcgatga gagtgtgcca      3060
     cccaagaaag tggcatatct gagaattccg gcagccatgg agacgaaagt agaatcaaaa      3120
     atccaggaaa tgctgcttag tgatgtaatt gaaccagttg tcggtccacc ggaatggata      3180
     tctcccatgg tcgttgttcc caaggggaag gacgatatca gattgtgcat taacatgaag      3240
     tatccgaatc aagcaataca gcgtgaacac tatcctcttc cgatgattga caccttattg      3300
     aacaagctca gaggttctac atacttttcg aagttggaca taacatctgc gttccaccac      3360
     attgaactgc accctgattc gcgaggaatt actaccttta tgactagcaa aggcttgatg      3420
     aggtacaaac gattgatgtt cggcatcaat tgcgcgccgg aaattttcca gcgcgtaatg      3480
     tgtgaaatgt tggctggcat agaaggggtg atcgtctaca tagatgacgt agtagttgca      3540
     ggagaaacta aggaacaaca tgacagtaga ttggaagaag ttttgtctgt ccttcgtaag      3600
     aacaatgcaa tgctcaataa gcaaaaatgc ttaatcgggg taaagcaact tgaaatcttg      3660
     ggttacaatg tgagtggtgc tggaataagc ccatcagatg acaaaattgc ggcaattcgg      3720
     aatttcagga agccagaaac aaaagaggaa gcccgcagtt ttctgggttt gataaatttt      3780
     gttggacagt ttatcccaaa tctgtccacc agaactgagc cactgcgacg atttattaga      3840
     ggagatgtat ctgtttttgg cgaggatcaa gagacggcat tcaacgatct tcgaaatgag      3900
     ttatctagca ctgttcgcag attgggtttc tatgacacga aagatgaaac agacttgtat      3960
     gtagatgcgt ctcctgtggg cctcggcgcc gttcttactc agagagatac attcggtacg      4020
     ccgcgaatca ttagcttcgc atcaaaggga ttaacaaaag ccgaaagaat ctatccacaa      4080
     acacaacgag aagccctcgc agtagtatgg gccgtggaga aattttatcc atacctgttc      4140
     ggtacttgct ttaatatctt tactgaccac aaaactctag aatatatcta tggcggtaaa      4200
     catcgtgatg gaaagcgggc ttgtacaaga gcagaaggtt gggcgctccg tctacagccg      4260
     tacaacttcc gtataaagca cattcccgga ccaaccaata tatcagatgt gctgtcacgt      4320
     ttgtgtcctc agtctgagtc tgatattccg tttgatgagg aatcggagca ctatctgtgc      4380
     gctatagatg atggattgga tgctattact ttggaggaaa ttcaatacga aacaaccagc      4440
     gatgaaaccc tatgtgcagt catagaagct cttcgaagcg gtgtctggcc gtcaactctc      4500
     attcactatc aatcttttgc caaggagatc ggagttatca atggaatcgt agttcgagac      4560
     gttcgaattg tactcccggt caaattgcgg ccaagagcat tggacattgc ccatcgtggg      4620
     catccaggag cagtgagtat gcgacgaaat ctacgtgaac atgtgtggtg gccctatatg      4680
     gaccgagatg taggtgatcg gattcaggaa tgtgctggat gtgctgcggt gagcactcaa      4740
     ggaccaccag aaccaatggc gagaaaagaa atgccggata gagcgtggca agagatagcc      4800
     atcgattttt tctctgcgaa agaatgtgcc actttccttg taatagttga ttattacagt      4860
     cgctttttaa aagtaatcga gatgaagagt accaccgcgt ccaagaccat cgaagctctt      4920
     gagcccgtct tcctggaaca aacgtatccc gaaactattc gcagcgataa tggtccgcct      4980
     ttctccagcg aagagttttt gtcctattgc aaacgaagaa atatcagatt gattaggacc      5040
     attccctact ggccacagat gaatggtctt gtggaaaggc aaaaccaagg aatcttgcga      5100
     gcgcttcgaa ttgccaaagc tgtcaaagca gattggcgaa aggccgtaag agattatgta      5160
     catatgtata atacatcgcc tcatacaatg actggtaaac caccattgga gctaatgaca      5220
     ggaaggccag taaaagatct gttgccgtct ttgcgaacgg aaccgtattg gaatcgtgat      5280
     gcagaagtac gggacgaaga tgccatcaag aaaatgaaag gaaagctcta ctccgataat      5340
     cgacgacgtg ccaaagaatc ggaaatcatt gaaggtgaca cagtgttgtt aagaaaccat      5400
     gagacaggaa aattggagcc aaaatttcga ctcgagaaat ttaaagtaat caagaagacc      5460
     gggagtgata caattgtggc caatgatgaa ggagttcgat atcggcgacc tgtntctcat      5520
     ctgataaagt ggggcggcaa atcattagga tcgacntctg gtgccccacg tgaagatgaa      5580
     acacaaatac cacttccacc agttgaaaca tcaattcagg atcatcctat gagtgaagag      5640
     agtaagctgg aaacgaataa tggaaacaat caaccgaaag tcaaccgtcc aaaacggatt      5700
     cggaagttac caatacgata caattaaggg gtaatatgtt tttttttctc ttaatacgtt      5760
     gcgtggtcgt tttgttttcc ttttattcat ttcttttatt ccagagtaga aaaggga         5817
//
ID   Gypsy-296_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-296_AA_;
KW   Gypsy-296_AA-I; Gypsy-296_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-273
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2695-2695 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 273 BP; 85 A; 46 C; 75 G; 67 T; 0 other;
     tgtagagtca tcgagatgtt taaccccagc tttccttata ctatcacgtg agcggggaga        60
     cgacagtttg agagagcgag agacgatgac gaacggtcac tacagcaagc gaacgagagg       120
     attggtgcaa acggataaag agtgtatgag tcagtgattt acgaagcttt gacaggatcg       180
     gtcgcgaaat aaagtaactt gttggaaagt atcagtagtg taattcttta atacgtccga       240
     agtgaaataa gttgaccctc ggtggattct aca                                    273
//
ID   Gypsy-297_AA-I repbase;    DNA;    INV; 4659 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-297_AA_;
KW   Gypsy-297_AA-LTR; Gypsy-297_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4659
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2696-2696 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3607-4071] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3388..4647
FT                 /product="Gypsy-297_AA-I_3p"
FT                 /translation="MFSDRLVIPVIYRQRCLNQLHKGHPGIQRMKAIARSF
FT                 VYWPCLDEEIANYVRDCNGCASAAKSPPKATPEPWPKPTVPWQRVHVDYAG
FT                 PLEGEYYLVVVDSYSKWPEIFPTKSITSKATINLIRSLFANKGMPEVLVSD
FT                 NGTQFTSAEFKEFCIENGVEHITTAPFHPQSNGQAERFVDTFKRAVRKVQE
FT                 GEGSIKTTLDIFLLTYRTTPNPNTPDGRSPAELMYNRRLRTSLELLRAPRK
FT                 QVSSTDTDTSQRTRSFVPKDAVYAKVYANNKWTWAPGTVVERIGRVMYNVW
FT                 IDNRKLIRSHINQLRSRGSTTHRASKKHTLSLDILLDECNVAKPSTISNPV
FT                 QTTPSLEPQLEPPPWVSSSESSSSSESSSSETSSSSSTTTSSAGFQSAVEA
FT                 SPVIQVPRRSSRNRRPPQWFSDYQRT"
FT   CDS           join(118..1095,1099..2835)
FT                 /product="Gypsy-297_AA-I_1p"
FT                 /translation="MSEQHQAPGVIPPGQIQNGLPPQNGQPLQQQPPNAPP
FT                 QQQQLPPPQHQQHPSLHPQQHPQPNLTQPQHSSPHDALIAQLLQQMQHQQA
FT                 IMSQILQQQRESQHHQQQGVLQQQEIFRNAMQTIQVHVPPNPEVILDSLAA
FT                 NIKEFMYDPDTHSTFGSWFARYEDLFAKDAERIDDAAKVRLLLRRLGTKEH
FT                 YRYVSYILPNTPKDFSFLETVEKLRGLFGTKESAVKKRYSTLTIAKSTTED
FT                 YVSYACRVNKMCVEFELPKMTEAQFKCLMFVCGLKSERDAEVRTRLLSKIE
FT                 DNGNVTLDALIEECQRLINLKNDTAMIENPAAPAQAIRGGQTQRKPFQKQF
FT                 GEHRKFQYQQKPQQQPRKNGPASPCWNCGAMHYAKDCSFVNHKCASCHQLG
FT                 HKEGYCSSAKRSAKGRKSSKQFSTNTVVSVNSVQSKRRFVWVKLNDIPVRL
FT                 QLDTASDITIVSQEAWERIGKPTAVPTTQSAQTASGDDLRLEFEFPCTVAL
FT                 NESVSTGHVYVSTNSLNLLGLDFIDKLNLWSLPMNTFCNLVSGDEPVDAGE
FT                 LQRAYPKLFNPTLGLCTKTKVSLALKEACKPVFRPKRPVSYAMLPTVDAEL
FT                 DRLESLNIISPVDFSEWAAPIVVVRKSNGSIRICGDYSTGLNDRLLPHQYP
FT                 LPLPQDIFSKLTGCTVFSQIDLSDAFLQMEVEESSRKLLTVNTHRGLYQYN
FT                 RLPPGVKAAPGAFQQLMDAMLAGIPYTSGYLDDVIVGGRDAKEHQRNLHAV
FT                 LQRIQEFGFTIRPEKCSFGQKQLGYLGLLLDKDGLRPDPNKIKAIQDMPPP
FT                 RDLTGVRSFLGAVNYYGKFVPNMRSLRYPPDELLKSSSTFQWTKECQKAFD
FT                 DFKAILSSNLLLAHYDPRQEIVVSADASSIGIGATISHKYPDGKMKVIQHA
FT                 S"
XX
SQ   Sequence 4659 BP; 1260 A; 1277 C; 1129 G; 985 T; 8 other;
     gtggcgacga gatttttcga agtttgtgtc ggtttcgccg gcttcgcgta gtgaaaaagc        60
     agttgcagtt tcatcacgac gcccccacgg aaaaggcgaa agcgcacata cagtgcaatg       120
     tcggagcagc atcaagcacc gggagtcatt ccacccgggc aaatccagaa cggactacct       180
     ccgcagaacg gacaaccgct ccagcagcag ccgccaaatg ctccaccaca gcagcaacag       240
     ctgcctcctc cgcagcatca acagcatcct tcactgcatc cgcaacagca tcctcagcct       300
     aacctcactc agccgcagca tagctcccca cacgatgccc tcattgcgca actcttgcaa       360
     caaatgcagc atcagcaagc cataatgagc cagatccttc agcagcagcg agaatcccaa       420
     caccatcaac agcaaggggt tctacagcag caagagatct tccggaacgc catgcagacc       480
     attcaagtgc acgttccacc caatccagaa gtaattctgg actcgttggc tgcaaatatc       540
     aaggagttta tgtacgaccc agatactcac tccacattcg ggtcgtggtt tgccaggtac       600
     gaagacctnt tcgcgaagga cgccgaacgc atcgacgacg ctgccaaggt tcgattgctt       660
     cttcgtcggc taggaaccaa ggaacattat cgctatgtca gctacatcct gccgaacaca       720
     ccgaaggatt tctcgttctt ggagaccgtg gagaagcttc gaggactttt tggcaccaag       780
     gagtcggcag tgaagaagcg ctattccacg ctcaccatcg caaaatcgac cacggaagat       840
     tacgtgtcct acgcctgccg tgtcaacaag atgtgtgtgg aatttgagct tcccaaaatg       900
     acggaggccc aattcaaatg tttaatgttt gtttgcgggc tgaaatccga acgcgatgct       960
     gaggtgcgga caaggctgct tagcaagatc gaggacaacg ggaatgtcac tctggatgcg      1020
     ctcatcgagg aatgccaacg gttgataaac ctnaagaatg atacggccat gattgaaaat      1080
     ccggcagctc cagcanntca agccatcaga ggaggtcaaa cacaacggaa gcctttccag      1140
     aagcagttcg gggagcatcg taagttccag tatcaacaga agccgcagca gcagccacgg      1200
     aagaatggcc cggcatcacc atgctggaat tgcggtgcga tgcattatgc aaaggactgc      1260
     agttttgtca accacaagtg cgcatcctgc catcaactgg ggcataaaga aggctattgc      1320
     tccagtgcca agagatcagc gaagggacgg aaatccagca agcagttttc caccaataca      1380
     gtcgtgtccg tcaacagtgt ccaaagcaaa cgtcgtttcg tttgggttaa gctcaacgat      1440
     attccggtgc gtctccagtt ggacacagcg tccgacatca ccatcgtgtc gcaggaggcg      1500
     tgggagagga tcggtaagcc aacagcagtt ccaacaacgc aaagcgccca gactgcgtca      1560
     ggcgatgatc ttcgtctcga gtttgagttc ccctgcacag ttgctctcaa cgaatcggtg      1620
     agtacaggac acgtttacgt ctctaccaac tcgctgaacc tcctgggnct cgacttcatc      1680
     gacaagttga acctctggtc attgccgatg aacacatttt gcaatctagt cagcggtgat      1740
     gaaccagtcg acgcaggcga attgcagagg gcctacccca aactcttcaa tccaactctg      1800
     gggctctgca cgaaaacgaa agtgagcttg gcattgaagg aagcgtgtaa accagtgttt      1860
     cggcccaagc ggccggtgtc ttatgccatg ctacccaccg ttgacgccga actcgatcga      1920
     ttggaaagcc tgaacattat ttcccccgtg gatttctcgg agtgggctgc tccaattgtg      1980
     gtagtgagga agtcgaatgg cagcatccgt atatgtggcg attattcaac gggcctaaac      2040
     gatcgcctac tgccgcacca gtacccgcta cccctgccgc aggacatttt ctcgaagctg      2100
     actggttgta ccgtattcag ccagatcgac ttatcggatg ccttcctgca aatggaggtc      2160
     gaggagagta gccggaaatt gctcaccgtc aacactcacc ggggcttgta ccaatataac      2220
     aggctccctc ccggagtgaa agcagctcct ggagcatttc agcagttgat ggacgcaatg      2280
     ctggctggaa ttccgtacac gtcgggctat ctggatgacg tcatcgtcgg cggtagggac      2340
     gccaaagaac accagcgaaa cttgcacgca gttctccaac gcatccaaga attcgggttc      2400
     acgattcgtc cagaaaagtg ctcttttgga caaaagcaac tgggatattt gggcctattg      2460
     ctcgacaagg acggacttcg cccagatcca aacaaaatca aggccatcca ggatatgcca      2520
     ccgcctcgcg atcttactgg agttcgctca ttcttgggag ccgtaaatta ttacggaaaa      2580
     tttgttccga acatgcgctc gctgagatac ccaccggacg aactcctcaa gtcgtcctca      2640
     accttccagt ggacgaaaga atgccagaaa gcgttcgacg acttcaaagc gatcctgtca      2700
     tccaatcttc tgttggcaca ctatgatcca cgtcaagaga tagttgtgtc agcagacgca      2760
     tcgtcgatcg gcatcggggc tactatcagc cacaaatacc ctgatggcaa aatgaaggtt      2820
     atccagcacg cttcanggtc actaacgccc accgaacaga agtactcgca gccggatcgt      2880
     gaaggattgg cgattgtatt tgcagtgacc aaattccaca agtacatctt cggacgacac      2940
     tttcgnctac aaacggatca cgctccactc ttgaggatct tcgggtctaa aaagggtata      3000
     ccagtgtata cagctaaccg ccttcaacgc tgggccctaa ccttgctgtc gtatgacttt      3060
     tccatggaat acgtcgctac ggataagttt gggaatgcgg atgtgctatc acgtctaatt      3120
     gaccagcata tcaagcccga tgaagatttt gtggtagcct gtacaaccct cgaagaagac      3180
     ctgaagtccg tagccaacag cacagtcagc cagctaccac ttagtttcca gatggtggag      3240
     caagccacaa gttccgaccc agttcttcgg aaagtgtacc gtttcgtcaa acacggatgg      3300
     ccgaagaatc gttcggaaat caaggatccg gagctactgc gctactatga ccgtcaagaa      3360
     gcgctatcca tcgtcgaagg ttgcatnatg ttcagcgaca ggttggtcat tccagtaatc      3420
     tacaggcagc ggtgcctcaa ccaactacac aaagggcacc caggaattca acgaatgaag      3480
     gccatcgcgc gaagttttgt ctactggcct tgtctcgacg aagaaatagc caactatgtt      3540
     cgagattgca acggttgtgc ctctgcagca aaatctccgc caaaagcaac accagagcca      3600
     tggccaaaac ccacggttcc ttggcagaga gtgcacgtcg attacgctgg cccattggag      3660
     ggcgagtact acttggtcgt cgtggattct tacagcaaat ggccggagat ttttccgaca      3720
     aaatccatca cttcgaaggc aacaatcaac ctcatacgaa gcctgtttgc caacaaggga      3780
     atgcccgaag tcctagtgtc agataatggc acgcaattta caagcgccga gttcaaggag      3840
     ttctgcatcg agaacggcgt ggaacatatt acaacagcac ctttccatcc gcagtcgaac      3900
     ggccaggccg aaaggtttgt cgacaccttc aagcgggcgg tcagaaaggt ccaggaggga      3960
     gaaggttcca tcaaaaccac cttggatata ttcctactca cctacagaac cactccgaat      4020
     cccaatacac ccgatggaag atcacctgcg gagttgatgt acaatcgtcg gctcaggact      4080
     tcgctagaac ttctacgcgc accacgcaag caagtatcat cgacggacac ggacaccagt      4140
     caacgaacca ggtcgttcgt tcctaaggat gccgtctacg ccaaggttta cgccaacaac      4200
     aagtggactt gggctccagg aacggtggtt gaaaggatcg gccgtgtaat gtacaacgtc      4260
     tggatcgata acaggaaatt gatccgttct catatcaacc agctcagaag ccgaggttca      4320
     actacccatc gagcaagcaa gaagcacact ttgtcgttag atattttact agatgagtgc      4380
     aacgtagcta agccttcaac gattagcaat ccagttcaga caacaccctc gctggaaccc      4440
     caattagaac caccaccttg ggtgtcgtca tcagaatcgt catcgtcttc agaatcgtca      4500
     tcaagtgaaa ctagttcgtc ctcctcaaca acgacgtcat cagctggttt ccaatcagca      4560
     gtcgaagctt caccagtgat ccaagtccct cgtcgatctt cacgcaacag aagaccgccg      4620
     cagtggttca gcgactacca gcgaacttaa ggagggaga                             4659
//
ID   Gypsy-297_AA-LTR repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-297_AA_;
KW   Gypsy-297_AA-I; Gypsy-297_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-236
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2697-2697 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 236 BP; 64 A; 53 C; 47 G; 72 T; 0 other;
     tgttggggtc aattgatcac cctaacggga acaccactgg gctctccgct ggcagcactg        60
     actgtcatcg gttgacgtct gtcgttctag tttgtcatgt agaagattat gattattatg       120
     tgtgatgtag acaatttgta aagtcacgtt tttatcacta gaatacaaat tagtttatag       180
     ataacaaacc cactattttc tcgccccaaa tgggccacct cgcgtacatc acaaca           236
//
ID   Gypsy-298_AA-I repbase;    DNA;    INV; 3070 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-298_AA_;
KW   Gypsy-298_AA-LTR; Gypsy-298_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3070
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2698-2698 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2181-2663] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           516..3002
FT                 /product="Gypsy-298_AA-I_1p"
FT                 /translation="MKNRKSNVTHEHQQVLEEHSKKYTAFSTTSGHYHFKR
FT                 LPFGLNISPNSFQRMMTIALAGLTPECAFVYVDDIVVIGCSENHHLRNLRL
FT                 VFDKLRQYNLKLNPEKCCFFKQDVTYLGHKITDEGILPDDSKYDIIKKYPI
FT                 PKNADEVRRYVAFCNYYRKFIENFSEIALPLNKLLRKNTPFKWSDECHISF
FT                 ETLKAKLLNPQILQYPDFQKEFILTTDASSTACGAVLSQNYNEIDLPIAFA
FT                 SRTFTKGELNKAIIEKELAAIHWAIEYFKPYLLGRKFRVKTDHRPLIYLFG
FT                 MKNPSQKLQRIRLDLEEYDFEIEYVKGKQNVIADALSRINITSDELKTINV
FT                 ITRSMTKTKTSDDDEVNILQPDQLRMFNALSFEEVIQLPKLEFNIANKHNS
FT                 ILCTPKIKNKKGTKDLLLVSGIHLMAEDKDALVHLFQNIEKCATKLNLDQL
FT                 ALPTDDEIFDFISAEELKRVANKSMKYIEILLYEKPKIIKDPRMASEILEK
FT                 THNSPTGGHIGQTKMYTKLRREFYWKNFKESIENFVNNCINCKLNKHQKHT
FT                 QEKFIKTTTPCKPFEIISIDTVGPFQKTNHNNRYAVTIQCDFSKYVSVIPI
FT                 INKEASTVARAIVEEFMLTYGTNISAVRTDMGTEYRNELFKNIAQLLKFDH
FT                 KFSTPYHPQTIGALERNHKCLNEYLRIFTNEHINDWDEWVNYYTFAYNTTP
FT                 NLDHGYTPFELVFGRTEKIQNQFLTEKVQPIYNYDDFVKELQRRLHTAHKR
FT                 TRKYIEINKQKTIKNQNKFNPIELKLGDQIAIVNENRKKLDQIYNGPYTVV
FT                 EISNPNVKITNSQGTTQIIHKNRLIKL"
XX
SQ   Sequence 3070 BP; 1201 A; 566 C; 515 G; 786 T; 2 other;
     ccttcntcgg tctagtagat ggcgaccnaa cgacaggtag gatctttgga gccttctcca        60
     agtgctaagc aaagtgaccg cttaactaca aatccggata agtaagttga agtgaaaaat       120
     cgaaaatgca gtgcgcgata actgccggaa taatcgcagt agtacttttc ttagccgtac       180
     taaaactagc agctgatttc ctagaagaac aaaaggaaat tatgaaattg gccaagatcg       240
     ccatccaata gtgatcaaac atggggagca cggagtctaa aagagaagaa atcgtagtgc       300
     agcagcagca gcaacagcag cagatgcaac cagtgacatc aacaggaatt ggcccagtgc       360
     atgtgattgc cacatgcatg gtgattttta ttgttgctat cctcctacgt gtaatttggc       420
     aaaccctgat gcgcgaaatt gaaagtcgcc cgcgccgtac gaacagtgtg ataacgaagg       480
     tttgaaaaag tgctagtgca ttaaatttat gaaaaatgaa gaacagaaaa tctaatgtga       540
     ctcatgaaca ccaacaagtt ttagaagaac attccaaaaa atataccgca ttttcaacta       600
     caagcggtca ttaccatttt aaaagattac ccttcggact taatatttca ccgaacagtt       660
     tccaaagaat gatgacaatc gctttggcag gcctaacacc agaatgtgcg tttgtttatg       720
     tagacgacat tgtggtgatt ggttgctctg aaaatcatca tttgaggaac ctcagattgg       780
     tttttgataa attacgccaa tacaacttaa aattaaaccc agaaaaatgt tgcttcttta       840
     aacaagacgt gacgtatttg ggacacaaaa ttacagacga aggcattttg cctgacgatt       900
     caaaatatga cataataaaa aaatatccaa tacccaaaaa cgccgatgaa gtaaggcgct       960
     atgtagcttt ttgtaattac tatcgaaaat ttatagaaaa tttttcagaa atcgccctac      1020
     cactaaacaa gttactgaga aaaaacacac cattcaaatg gtcagatgaa tgccacatat      1080
     cattcgaaac tttgaaagcg aagcttctaa acccccaaat tcttcaatac ccagattttc      1140
     aaaaagaatt catattgaca acggatgcat catcaacagc ttgtggcgct gttctttcac      1200
     aaaactataa cgaaatcgac cttccaatag catttgccag tagaaccttc acgaaaggcg      1260
     aactgaacaa ggctattatt gaaaaagaat tagctgcaat ccattgggct attgaatatt      1320
     ttaaaccgta cctattagga cgaaaattcc gagtgaaaac agatcataga cccttaatat      1380
     atttatttgg gatgaagaac ccatcccaga aattacaaag gattcgtctt gacctggagg      1440
     aatatgactt cgaaatagag tatgttaaag gaaaacaaaa tgtaattgct gatgccctct      1500
     cacgcatcaa cattacttca gatgaattaa aaacaattaa tgtcataaca cgaagcatga      1560
     ctaaaactaa aacatctgac gacgacgagg taaacatctt gcagcctgat caactcagga      1620
     tgtttaacgc tctttcattt gaagaagtta tacaacttcc gaaattagaa tttaatatag      1680
     ctaacaaaca taacagcata ctgtgtacac caaaaatcaa aaataaaaaa ggcacaaagg      1740
     acctcttatt agtaagtgga attcatttga tggcagagga taaagatgca ttagtgcact      1800
     tgttccaaaa tatagaaaaa tgtgcaacca agttaaactt agaccagcta gcactaccta      1860
     ctgatgatga aatttttgat tttatttccg cggaagaatt aaaaagagta gcaaataaat      1920
     ccatgaaata cattgaaata ttgttatatg agaaaccaaa aattataaaa gatccaagaa      1980
     tggcctctga gattctcgag aaaactcata acagccctac cggaggtcat attggtcaaa      2040
     ctaaaatgta taccaaatta cgaagagagt tttattggaa aaattttaaa gaatcaatcg      2100
     aaaactttgt aaacaattgc ataaattgta aacttaataa acatcaaaaa cacactcaag      2160
     aaaaatttat aaaaacaaca accccctgca aaccatttga aattatttca attgatactg      2220
     ttggaccatt tcaaaaaacc aatcataaca atagatacgc agttaccata caatgtgatt      2280
     tttcaaaata cgtttcagtt attccgatta taaacaaaga agcctcaacc gttgccagag      2340
     ctattgtaga agaattcatg ctaacatatg gaacaaatat atcagcagtt agaacagata      2400
     tgggaacgga atacaggaat gaattattca aaaacatagc acagttatta aaatttgatc      2460
     ataaattttc tacaccttat catccacaga caatcggtgc attggagaga aatcacaagt      2520
     gtctcaatga gtacttgcga attttcacca atgaacatat aaatgactgg gatgaatggg      2580
     tcaactatta cacattcgca tataatacta caccaaattt agaccatgga tatactcctt      2640
     ttgaacttgt ctttggcaga acagaaaaaa tacaaaacca attccttaca gaaaaggtac      2700
     aaccaatata taactacgac gattttgtaa aagaactaca acgtagatta cacacggcac      2760
     ataaaagaac cagaaaatat atagagatta acaagcaaaa aaccatcaaa aaccaaaaca      2820
     aattcaatcc catcgaacta aaactaggag atcagatagc aatagttaac gaaaacagga      2880
     aaaagttaga tcaaatatac aatggtccat atacggttgt tgaaatttca aatcctaatg      2940
     ttaaaataac aaattctcaa ggaacaactc aaattataca caaaaacaga ttaattaaat      3000
     tataaaagag ttttagggca atggtctgag agtcagaatg tttaacacca ttctcccaaa      3060
     aggggggagg                                                             3070
//
ID   Gypsy-298_AA-LTR repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   23-FEB-2012 (Rel. 17.12, Created)
DT   23-FEB-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-298_AA_;
KW   Gypsy-298_AA-I; Gypsy-298_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-356
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2699-2699 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 356 BP; 109 A; 81 C; 68 G; 98 T; 0 other;
     tgtggtgcac agtcaaaaga cgtgcccatc ttcagttaag ttaattcggt ggtcataaaa        60
     atatatgctg acgcgaacga tgaaccaaca tctaggttcc acgcatttgc ggggagctcg       120
     attaacagtt cgatcgatcg cgataggcaa cgatcggacc acaattattt tgtcacgctg       180
     acctcagcat atgtgctcca gaactcttca cccattactt ctaggcaaaa ccattaatgt       240
     agcacatacc ggtgcaacac ttttaggcct atttaaggaa tccagattca ttgaatacag       300
     cagttcaatt tgggtcttcg aaccaaacaa gtcttttaat caatgattaa atatca           356
//
ID   Gypsy-299_AA-I repbase;    DNA;    INV; 3947 BP.
XX
AC   .
XX
DT   07-MAR-2012 (Rel. 17.12, Created)
DT   07-MAR-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-299_AA_;
KW   Gypsy-299_AA-LTR; Gypsy-299_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3947
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2700-2700 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3054-3374] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..3374
FT                 /product="Gypsy-299_AA-I_1p"
FT                 /translation="MPDQSDEIAADPGTSSVAVHVAASVAVKLPDFWRSDP
FT                 TMRFAQAEAQFALANVVQDQTKFYHIIAKVDQSILCHISDLVANPPQNDKY
FT                 LTVKTRLIKRFEVSPQGKLEQLLGSCDMGDLRPTHLLAKMQELATGLNVND
FT                 ELLKMLFLQRMPGNVKAILAISDGSLAKLAEMADKMMESSASVSMVSIHSE
FT                 QQKPLEVAATSKHSDGFSPSDLQEQIDFLSAEIRRLRTRSASRSRSASRSS
FT                 SATEICWYHKKFGRNANTCRQPCRYSDKKKLIPRSPVSAEVSGVTESRRFL
FT                 IFDRSSNIKFLIDTGSDVSIVPATSKQRQQKPVPIRLHAANGSSIKVYGSR
FT                 YIDTDFALRRKFCWNFLIADVQIAIIGADFLANFGLLVDLKNRRLVDEKTG
FT                 LHTCGGRATSSIFGVTTIGLCHPFRDLLQEFREITVPTTTGSVAKHDVKHF
FT                 IQTKGPPVAFKVRRMSPDKVNAAKKEFKLMCDLGVCRPSSSSWASPLHCVP
FT                 KKDGQWRFVGDYRALNKVSVPDRYPVPHIQDLLYAFQGKSVFTTLDLVRAY
FT                 HQIPVNEEDIEKTAVITPFGLFEFPRMQFGLCNAGQTFQRFMHKVLGDLDF
FT                 VVVYIDDICIASSSQEEHRRHVRIVFERLHDHGLVINLEKSKFVQEKVDFL
FT                 GYSVSSTGVLPLPERVRAVTNFPLPVTVKDLRRFLALVNGYKRFIPHASAI
FT                 QIELQALIPGNKKNDMRKICWTDTTRLAFHECKKSLSDATLLHYPDSAKAL
FT                 ALMVDASNTAIGATLQQLDGDNWQPLGFFSEKLSKAQRNYSTFGRELTAAK
FT                 KAVQYFRYLVEGRKLVIFTDHKPLTFAMGSSTDNRLPHEQRYLNYISNFTT
FT                 DIRHISGSKNTVADALSRVAAISTPSLIDYEQLAIDQAGDSELASLIASAT
FT                 SLKLELRQTPLTPKALYCDVSIPGKVRPYVPKQYRHQILQYFHGVSHPGIR
FT                 STRRLLSDRFVWTSMNKDVRTHVKSCIECQKSKIHRHTKAAVQSFELPKAR
FT                 FRHVHMDLVGPLPPSNGNRYLLTIVDRFTRWPEAIPLADTTADTVARAFCS
FT                 TWISRFGVPEKITTDQGKSSNHVYSVNCPRLWDSNIFGPQHIIRRRTV"
XX
SQ   Sequence 3947 BP; 1092 A; 859 C; 892 G; 1104 T; 0 other;
     tccctaaatt ggtaaccccg acgcgagttt cgacgcgata aaactcgttt taaagaaaaa        60
     tgccggatca gtcagatgag atcgccgccg accccgggac atctagcgta gccgttcatg       120
     tagccgcttc tgtagccgta aagcttcctg atttttggcg gtcggatccc accatgaggt       180
     ttgctcaggc agaggctcag tttgccttag cgaatgtggt acaggatcaa accaaattct       240
     accatattat cgcaaaggta gatcaatcga ttctttgcca catatccgat ctcgttgcta       300
     atcctccgca gaacgacaag tatttaaccg tgaagactcg tctcattaaa cggtttgagg       360
     tgtcgcccca aggcaaattg gagcagttat tgggatcctg tgatatggga gatctgcgac       420
     ccacacactt attagctaaa atgcaggagt tagcaacagg attgaacgtt aacgacgagt       480
     tgctaaagat gttgttttta caaagaatgc caggcaatgt aaaagcaata ctcgcgataa       540
     gtgacggaag tttggctaaa ttagcagaga tggctgacaa gatgatggag tcatcggcta       600
     gtgtatccat ggtatcaata cactcagaac aacaaaagcc actcgaagta gcagctactt       660
     caaaacactc agacggtttc tcaccaagcg atctacagga acagatcgat tttttatcag       720
     ctgaaattcg taggctgaga acacgatcgg catcgagaag tcgctctgct tcgaggtcat       780
     ctagcgctac agaaatttgt tggtatcata agaaatttgg acgaaatgct aacacttgtc       840
     gacagccttg tcgatattcg gataaaaaaa aactaattcc tcgttcacct gtatcggcgg       900
     aggtgagcgg agtaacagaa agtcgccgtt ttctgatctt cgatcgttcg agtaacatca       960
     aatttttaat agacactggc tcagatgtgt ctattgttcc tgctactagt aaacaaagac      1020
     aacagaaacc cgttcctatt cgacttcacg ctgctaatgg tagcagtatc aaagtgtatg      1080
     gttcacgata catcgatacg gactttgcac ttcgacgaaa gttttgctgg aattttctga      1140
     ttgctgatgt tcaaatagct atcatcgggg ccgatttttt agcaaatttt ggattactag      1200
     tcgatcttaa gaatcgtcgt ctcgttgatg aaaaaacggg attacatacg tgtggaggta      1260
     gagcaacatc atcaatattc ggcgtgacta cgattgggct ttgccatccg ttccgcgatc      1320
     tgctgcaaga atttcgtgag ataacagtac caactactac tggaagtgtt gcaaaacatg      1380
     atgtgaagca tttcattcaa actaagggcc ctccagttgc ctttaaagtt cgtcgtatgt      1440
     cgccggataa agtgaatgct gccaagaagg agtttaagtt gatgtgtgat cttggtgtgt      1500
     gccgtccatc atcaagcagc tgggcaagcc cattacactg cgtgccgaaa aaagatgggc      1560
     aatggcgttt tgttggcgac taccgtgcgt taaacaaggt atccgtaccc gatcgttatc      1620
     ctgtaccgca catacaagat cttttgtatg cctttcaggg gaagtctgtt tttactactc      1680
     ttgacttggt tcgagcgtac catcaaattc ctgtgaatga agaagacatc gaaaaaaccg      1740
     cagtgatcac tccattcgga ttatttgagt tccctcgtat gcagttcggc ctttgcaatg      1800
     ccggacaaac gtttcagcgc ttcatgcaca aggtcctagg cgacctggat tttgtggtag      1860
     tgtacataga cgatatatgt atcgcttctt ctagtcaaga agagcatagg aggcacgtgc      1920
     gaattgtctt cgaacgcctg catgatcacg gcctggtaat caacctagaa aaaagtaaat      1980
     tcgttcaaga gaaggtggat ttcttaggtt attcggtgag tagtaccgga gttctaccct      2040
     taccggaacg cgtgagggcc gtgacgaatt tccctctccc ggttactgtg aaggatttgc      2100
     gccgtttctt ggcactcgta aatggctata agcggttcat tccgcacgca tctgccatcc      2160
     agattgaact ccaagcgctt attccgggga acaaaaagaa tgacatgaga aaaatatgtt      2220
     ggacggacac aacacggtta gctttccatg agtgcaaaaa atccctctcg gacgcaacac      2280
     tgctgcatta tccggactcc gctaaggccc ttgctcttat ggttgatgct tcgaatactg      2340
     cgataggagc aacacttcag cagctcgatg gggataattg gcagccactt ggattctttt      2400
     cggaaaaatt gtccaaagca caacggaatt actcgacgtt cggacgtgaa ttgactgcag      2460
     caaaaaaagc cgtccaatat tttcgttacc ttgtggaggg taggaagttg gtcatattca      2520
     ccgaccacaa accgcttacg tttgctatgg gttccagcac cgataatcga ttgccacatg      2580
     aacaaaggta tttgaattat atttctaact ttactaccga tattcgacat attagtggta      2640
     gtaaaaatac cgttgcagac gctctatctc gtgtggcagc aatttcgact ccatcgctta      2700
     tcgattacga gcagttggct attgatcaag ctggcgatag tgagttagca tcattgatag      2760
     catcggctac atcattgaaa ttggaacttc ggcaaactcc acttactcct aaagcgcttt      2820
     actgtgatgt ctccattccc ggaaaggtac gtccttatgt tcctaaacag tatcgtcatc      2880
     aaattttgca gtattttcat ggtgtttcgc atcctggaat tagatccact cgtcgtttgt      2940
     tatcggacag atttgtatgg acttccatga acaaagacgt taggactcac gtcaaaagtt      3000
     gtatcgagtg ccagaaatca aaaattcatc gacacacgaa agcagcagtt caaagtttcg      3060
     aattgcctaa agcacgattc cgccacgtac atatggattt agttggcccg ttaccacctt      3120
     ctaatggtaa tcgctatttg ctcacgatcg ttgaccggtt cactcgatgg cctgaagcaa      3180
     tccctttggc tgatacgaca gcggacaccg tggcacgcgc gttttgttca acgtggattt      3240
     ctcggtttgg agttccggag aaaataacaa ccgatcaggg caagagttcg aatcatgttt      3300
     attccgtgaa ttgtcccaga ttatgggatt caaacatctt cggaccacag catatcatcc      3360
     gcaggcgaac ggtttagttg agcgtttcca tagaacgttg aaagctgcta ttatggcagt      3420
     tgattcaaaa cattggagcg atcgtttgcc gttgattttg ttgggtctgc gtacattata      3480
     tagagaagat ttggactgtt cggtggcgga tttagtctac ggtcaagcat tgcgtttacc      3540
     tggtgaatat tttgaatact atccgacaga acttcatcaa gctgacttcc tggtacaatt      3600
     acaagagacg atggatcatc tacaaccacg ttcccctaat caccattcta agccgtccgt      3660
     gtttgttcat caagatttgg ccaaatgttc ccatgttttc gtgcgaatcg actctgttaa      3720
     aaaaccactc caacgaccat atgaagggcc gttcaaagta ttgcagaaac atggaaaatt      3780
     catggatgtt cagattcatg ggaaatccca acgaatttcg attgatcgtc ttaaaccagt      3840
     atttggtttc aatgattcta ttagcgattt tccaattcaa gacaaaagtt taaaagttac      3900
     tccatcaggt cataggattc gttttatggt gtaactgggg agagtac                    3947
//
ID   Gypsy-299_AA-LTR repbase;    DNA;    INV; 147 BP.
XX
AC   .
XX
DT   07-MAR-2012 (Rel. 17.12, Created)
DT   07-MAR-2012 (Rel. 17.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-299_AA_;
KW   Gypsy-299_AA-I; Gypsy-299_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-147
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 12(12), 2701-2701 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 147 BP; 43 A; 25 C; 29 G; 50 T; 0 other;
     tgtagtgggg ttaaatcgat agaccccttg tattgagtgt gcgctaagat acgagagaat        60
     aaataaaatc agttcgtttt taacctgtaa accaatcggt cgttttgtat tattgcttcg       120
     tcaaactctt gatatcacta agtctca                                           147
//
ID   Gypsy-29B_DEl-I repbase;    DNA;    INV; 4569 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29B_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4569
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7085-7085 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..4035
FT                 /product="Gypsy-29B_DEl-I_1p"
FT                 /translation="MPASTVQQTGEICLPKYNPDIAGVDATQWCATVDIIL
FT                 RTKPLSDSALILALSKALEGTAAQWLSQICYPGITWQQFRQLFEQRFESSE
FT                 TPAAVIFNLLNSRPRNGESLPVFASRSVTSLCTKLRNLNCEQISIALILGH
FT                 MANFDRRLQRMIHTTHISNRRELQAELQVFSALKERPIAPNWEPETKRAKT
FT                 ADLKCYQCGKPGHKKQDCRSGLGFQFSSTEKERRSGKSHQERPIVTCYRCQ
FT                 EPGHIATNCQKKVQNTGSRVRSEKRVELCTVVEPKSSMLVDGERFPITFDS
FT                 GAECSLIKESVSNKLVGKRIHSVISLKGIGNANTYSTVQVESNIMVDGNSL
FT                 VVLFHIVPDECMTNNIVIGREILAQGFSVEVSYDNFKIIQTKAVNVCETVQ
FT                 PIDFDNIETEVVGNEKEMLISLLKQHSKSFTEGTPQTRVSTEEMRIRLIEP
FT                 TKTVQRRPYRFSPCERELVRVKINELIEYKVIRPSSSPFASPALLVKKKNG
FT                 TARLCVDYRELNKNTVADKFPLPLISDQIARLRGANYFTSLDMACGYYQIL
FT                 MHPESIEYTAFVTPDGQYEFLSMPFGLKNAPSVFQRAVLKALGSLAHSFVI
FT                 VYMDDILIVSETKEEAFERLQLVLDVLVKAGFSFNISKCFFLRTTVRYLGY
FT                 EIKAGEIRPNLNKIESLVALPPPKSVATLRQFIGLASYFRQFIPGFSQLMK
FT                 PLYFLTSEKNSFDWQVQHEEIRSKIISVLTNKPVLIIFDPQFPIELHTDAS
FT                 SIGYGAILLHRINSKPHVVEYYSRATSSCESRYISYELETLAVVNAVKHFR
FT                 HYLHGRKFVVFTDCNSIKSSRNKVELSPRVYRWWEFLQAFDFEIEYREGKR
FT                 MAHVDFLSRNPVCQKIKSVPNKIEEKRIDLTEISENWILVEQQRDPEILEI
FT                 ITKLKNDDLPLALVATYEMRSNVLYRKIQRHSRTRCLPVVPRTFRWSVINQ
FT                 VHESIMHLGWEKTLDKVYDHYWFTGMAKYVRRFVENCITCRVSKSTSGKPQ
FT                 IELHPIPKISIPWHTVHIDISGKLSGKSDRKEYIIVQIDAFTKYVYLFHTF
FT                 SLDANTCISAMKSSIAIFGVPTRLIADQGRXFTGTKFAQFCSNQKIQLHLI
FT                 GTGASRANGQVERVMSTLKNLLTAVETSPRSWQDALGDVQLALNCTVNRST
FT                 KCSPLELLIGKIARPMGLIPIGDTETEFDKIELRELAAKNMEEVARYEKTK
FT                 FNKNMAKVIKFCVGDFVLLKNSERQQTKLDPKFRGPFLVVEVLNGDRYVLK
FT                 STQNNRRYKYPHESLRKLPDVQIPEELDVNYKAQSLLEKSVETEECRETM"
XX
SQ   Sequence 4569 BP; 1447 A; 764 C; 1057 G; 1295 T; 6 other;
     tcagaagtgg gattcggccc taaccaaact ttgtcaaggg atgtcttcgc gttgttggag        60
     caacaaaacc ggaattttct ggaactggtt aagaaactac agatgccggc gagcacagta       120
     caacagactg gcgagatttg cttgccgaaa tataatccgg acattgctgg agtggatgcc       180
     acgcagtggt gcgctacggt cgacataatt ttacgaacga aaccgctaag tgacagcgct       240
     cttatattag cgctgagtaa ggccttggaa ggcacagcgg cccagtggtt gtcacaaata       300
     tgctacccag gaataacttg gcaacagttc cggcaattat ttgagcagcg tttcgagtct       360
     tcagagacgc cagccgctgt tatttttaat cttctaaata gtcgsccaag gaacggtgag       420
     agcttgcctg tttttgcgag ccgcagcgtg acgtcactgt gcacaaaatt gcgtaattta       480
     aattgtgaac aaatttccat cgctttgatt cttgggcata tggctaattt cgaccggcgt       540
     ttacaacgaa tgatacacac aacgcatatc agcaatcgac gtgagctgca agcggagctg       600
     caagtatttt ctgcactgaa ggagcgtcct attgcaccaa actgggaacc ggagactaag       660
     cgggctaaaa ctgctgatct aaaatgttat cagtgtggaa aaccaggaca taaaaagcaa       720
     gactgcagat ctggactagg atttcagttc tcgtcaactg aaaaggagcg gcgttctggg       780
     aagtctcatc aggaaaggcc aattgtaact tgttacagat gtcaggagcc gggacacatt       840
     gccactaatt gtcaaaaaaa agtgcagaat accggatcga gagtaagatc ggaaaagaga       900
     gtggagctgt gcactgtggt ggagcctaaa tcgagtatgc tggttgatgg tgagagattt       960
     ccaataacat ttgattcggg agctgagtgt tcattaatta aagaaagtgt ttctaataag      1020
     ttagttggta agaggattca tagcgttatc tctctaaagg gaataggcaa tgccaatact      1080
     tacagcactg tacaagttga gtcaaacatc atggttgatg gtaattcttt agtagttttg      1140
     ttccacatag taccagatga atgcatgacg aataatattg taattggcag agaaatattg      1200
     gctcaagggt tttcagtaga agtgtcttat gataatttta agattattca aactaaagct      1260
     gtgaatgttt gtgaaacagt tcaacctatt gattttgata acattgaaac tgaagtggtc      1320
     ggaaatgaaa aagaaatgtt aatatcattg ctaaagcaac attcaaaatc gtttacagaa      1380
     ggcactccgc aaacgcgtgt gagtactgag gaaatgcgta ttcggttgat tgaaccgact      1440
     aagactgtac aaaggcggcc atacagattt agtccatgcg aaagggaact agtacgagtt      1500
     aaaattaatg aattaatcga gtataaagtc atcagaccta gtagttcacc ttttgctagt      1560
     cctgcattat tggtaaagaa gaaaaatggt acagcaagac tttgcgtcga ctatagagaa      1620
     ttgaataaaa atacagtagc ggataagttt ccattaccgt tgatctcaga tcaaatagct      1680
     agacttaggg gagctaacta tttcacttct cttgacatgg cttgcggcta ttaccagatt      1740
     ttaatgcacc ccgaatcaat tgaatataca gcatttgtta ctcctgatgg gcagtacgaa      1800
     tttctttcga tgccctttgg tttaaagaac gcaccctcag tgtttcaaag agctgtactg      1860
     aaagcacttg gtagtttggc tcattcgttt gtaatcgttt atatggacga tatattaatt      1920
     gtttcggaaa caaaagaaga agcttttgag cgactgcaac tggtattaga cgttctagtg      1980
     aaggcaggat tctcatttaa catttcaaag tgcttcttct tgagaactac agttcggtac      2040
     cttggctacg agataaaagc gggggaaata cgcccaaact taaacaaaat agaatcgcta      2100
     gtggcgttgc ctccaccgaa atcagttgct actctgagac agtttattgg gttagcgtca      2160
     tattttcgtc aattcattcc gggtttttca caattaatga agccgttata ttttctcaca      2220
     tctgaaaaga atagttttga ttggcaagta cagcatgaag aaatacgcag caaaatcatc      2280
     agtgtattaa caaacaagcc tgttttgatt attttcgatc cacagtttcc gatagagttg      2340
     cataccgatg ccagttctat agggtatggg gcaatccttt tgcaccgcat aaactctaag      2400
     cctcacgtgg ttgaatacta tagtagagcc actagctcct gtgagtccag atatatatcc      2460
     tatgaattgg aaacgctggc tgtcgtgaat gctgtaaaac attttcgtca ttatctgcat      2520
     ggcagaaaat tcgtggtttt tactgactgt aattcaatca aatcttctcg aaataaagtc      2580
     gaattgtcac ctagggttta tcgttggtgg gagtttctac aggcatttga tttcgaaatt      2640
     gaatacagag aaggtaaacg catggcacac gtggactttt tatctaggaa tccagtgtgc      2700
     caaaagatta agtctgtacc aaataaaata gaagagaagc gaattgactt aacagaaata      2760
     tcagaaaact ggatactggt ggaacaacaa agggatccag aaatattaga aatcataact      2820
     aagttgaaga atgacgattt accattagca ctagttgcca cttatgaaat gagatcaaat      2880
     gttttgtata gaaagattca gaggcattcc agaactcgtt gtttacctgt agttcctcgt      2940
     acgttccgct ggtcagttat aaatcaggta catgagtcta tmatgcattt aggttgggaa      3000
     aaaacgctag acaaggtgta cgatcattac tggtttactg gtatggcaaa atatgtccga      3060
     agatttgtgg agaactgtat tacatgcaga gtgtctaaga gtacgtctgg aaaacctcaa      3120
     attgaattac atccaattcc aaaaattagc attccttggc acacagtaca catagatatt      3180
     tcgggaaaac taagtgggaa aagtgatcgt aaagaatata tcatagtaca aatcgacgct      3240
     tttactaaat atgtttatct atttcacacc ttttctttgg atgctaatac ttgtataagc      3300
     gcaatgaaat cttcgattgc catttttggt gtgccaacac gtttaattgc agatcagggg      3360
     cgcwgcttca cgggtacaaa gtttgcgcaa ttttgttcta atcaaaagat acaattacat      3420
     ctaattggaa caggtgcaag tcgagccaac ggccaagttg aaagggttat gagcacactt      3480
     aaaaatctgt tgacggctgt tgagacaagc cctagatcgt ggcaagatgc actaggggac      3540
     gttcagttag cccttaactg tacagttaat cgtagcacta agtgtagtcc tttagaactt      3600
     ttgatcggta agattgcgcg tccaatgggg ttgattccta ttggcgatac tgaaaccgaa      3660
     tttgacaaga tcgaattaag agagctagcc gctaagaaca tggaagaggt cgctaggtat      3720
     gagaaaacaa aatttaataa gaatatggct aaggtaatta agttctgtgt gggcgacttt      3780
     gtgttactta aaaacagtga gagacaacaa acaaaattag atccaaagtt cagaggaccc      3840
     tttttggtgg tcgaggtttt gaacggagat cgatacgttc taaagtctac acagaacaat      3900
     agacgttaca agtatccaca cgaaagtttg agaaagttac cggatgtgca aattccagaa      3960
     gagcttgatg taaattataa agcacaaagt ctgttggaaa agtctgttga aacagaagag      4020
     tgtcgtgaaa ccatgtgatt ggtgatgaac gaaggttgct ttagaaatga gattgatgaa      4080
     ttcgtgaagc caagtgttgg gcgatgtacg agcgatgtgg ttaatgaatt cgtgaagcca      4140
     agtttgggcg atgtacgagc gatgtggtta atgaattcgt gaagccaagt gttgggcgat      4200
     gtacgagcga tgtggttaat gaattcgtga agccatgtgt tgggcgatgg acgagaaaga      4260
     aaaaaaaaag aatgcgtgaa gccaatgcgt ttggcgatgg acgaagttgg ctagtataag      4320
     acaagttctg tttcatggat tatsatttaa tgatttgtaa tgattaattt ataatttgat      4380
     aatgttwaaa tgatctgttg agtgaaaatg taaatgaaag aaatggttta taagagaaca      4440
     ttatgattgt watatgaatt tgagattact tggttaagtt tttctgaagt attcaataaa      4500
     attataatgt tggaatgaaa ctgagaggtt tattgtagac acgaggacgt gtctatgtca      4560
     gaatggccg                                                              4569
//
ID   Gypsy-29B_DEl-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29B_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-340
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7076-7076 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 340 BP; 90 A; 61 C; 92 G; 97 T; 0 other;
     tgtcggagag tatgtagtga agcatttcga caggtatgac catgggttgt gctggtatac        60
     tagatatact agatattagt tttggtagaa tggggactca gtttgcgagc tgaggccgag       120
     tgtggcttcg tatgcgttgc tagatctggt ctctcctttt cttctggttt gtagcgtggc       180
     gtgagataga cacgtgtttg gtccttacga gagaatgatg agcaacaaaa gcatcgaaga       240
     ctcgctgcat ttgccagaat taagttcagg caatcaagaa ccaaacgatc aattcaccag       300
     caatgacgac ttacaagggg atgaatttag ttctccgaca                             340
//
ID   Gypsy-29_AA-I repbase;    DNA;    INV; 6322 BP.
XX
AC   supercont1.18;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_AA_;
KW   Gypsy-29_AA-LTR; Gypsy-29_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6322
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.18; Positions  759078  752757.
XX
CC   Positions [4397-4873] - Integrase core
CC   'ATAAT' target site duplication
CC   LTRs are 99% similar to each other.
CC   A non-autonomous DNA transposon inserted at positions 5360-5596
CC   is masked.
XX
FH   Key           Location/Qualifiers
FT   CDS           782..2122
FT                 /product="Gypsy-29_AA-I_1p"
FT                 /translation="MVVYATKYFINSFQSILFRYLIVMSANGMYVRAPDAY
FT                 MDEEESELYVVESQYSDDLNSCQLGANEVVGITEPIDTDGEGEPQSAEEVM
FT                 WSTEDDPNATIMEKNQKDACSTNAHIDERLDRLERMMLELASSHTTSARNV
FT                 PVEQNEIGWGFAKETGSQGAGYSSIRMETIPPFPKDVPANKLWEAWQEFLE
FT                 NFEIAVSLSHPLDPVRRAKLLFVSMGRELQGIVRAAKLRPNLNEATCYSTF
FT                 VENIDRHLKAMTDTSAEHEAFTSMKQEKGESAVSFHSRLMEKVRLCGYSPS
FT                 DQERFVRAQLLKGLANRELAKLSRTFGYETNFVVQSATRDEAYDRETRHEA
FT                 PDVYAITQTKSEPGANPGPAWKRPRTNESNRRAVHARDNFRKGRRFRCSRC
FT                 NRLAHNGGPCPALGRKCRTCGMEDHFAAACRDRRKTAGALRRDERTSNDAE
FT                 QV"
FT   CDS           2195..5314
FT                 /product="Gypsy-29_AA-I_2p"
FT                 /translation="MSFILRSTYPLFQEINAITLDDVTVNCRVGRSTPISF
FT                 LIDSGADVNVIGGSDWSVLYDQYQKGLVDLDIMNTQPNQELRAYATSNPMT
FT                 VKCSFRGTVEIVGSSKPVVKALFLVVSEGRRSLLGRTTAGEMKLLEVGLAV
FT                 NNCDTVQPEIFPKMPGVIVKFSVDKTVPPVKNAYFNVPAAYREGARLRLCD
FT                 MEKQGIIERVAGAPGWISGMSAVPKGQNDFRLVVNMRSANKAIKREYYRLP
FT                 LLDEMKIKLHGAKHFTKLDLSNAYYHLELSEESRDLTTFMTENGMYRFTRL
FT                 MFGVNCAPEIFQREMCRILEGEDNIIVYIDDVLIFANSPEQLRKITSRVLE
FT                 ILRKNNLTLNKSKCEFEKTQIKFLGHELDEDGFHVDKAKIKDIENFRPPTT
FT                 GSELRSFLGLATFISPYIDNFANITHPLWAVSSSRTWTWGPQQQKAFEEIK
FT                 NKITHCTTTLGYFSEEDRTIIYTDASPDALGAVLVQQQEGHPPRIISFASK
FT                 SLTPTEKKYAQNQREALGAVWAIEHFSFFLLGRQFTLRTDAEGITFILNRT
FT                 REDSKRALTRADGWALRLSPYNYDVEFVKGRDNIADPSSRLYVGVDEPFDE
FT                 QKSPWEVACLDSNKGGFLTVDEIRKATLNDPILQKVRASVESGDWPADLNK
FT                 FKAVTRELSLRDGLLIKNGCAVIPESLRERTLELAHDGHPMTAKLKSILRE
FT                 RVWWPGITSDAEKWVQSCKTCAVNGKPEKPTPMKRIFAPQSVWETIALDFN
FT                 GPYVKHGGISILVIVDYRSRYLIARPVKSTSFDHTKRVLEDVFAREGFPAT
FT                 MRSDNGPPFNSTEYKQYCAQRGIQTVFSTPLFPQQNGMVENYMKLINRAMA
FT                 SATENNTKFTDELQAAVNAHNAAAHSITGIPPEEVLMGRKIKRRLPLVDYK
FT                 RAEYNDETLNAKDKKAKLLGKEREDARRGARECRVKPGDTVIVERQNKAKG
FT                 EPRFDNNKFTVLEEVNGNLTLSSNGLTLKRHVTQTKKVGDWRNETDDETRN
FT                 DSAVDESGKESHRPGCQRKQPAYLQNYVRTVSDD"
XX
SQ   Sequence 6322 BP; 1917 A; 1254 C; 1446 G; 1468 T; 237 other;
     atggcgatcc agccaggtta gctgttcttt cgaagcagct aataaagaaa ggatcagtcg        60
     atgacctcgg aattccctta cattttcaaa ttttcctgca aagcaatgct accatcataa       120
     cctctgatac aaatgcgaca cgatgagtag agattaccat ctcaagcgag gggtagtaaa       180
     attgttttcc caagaaaata tatctaactt tgcttgcatg tgctgagaca gccatcgata       240
     atgaaggtta tgagtttgtt agaacaaaat gatcaatgag ctgagaccgc cattaaaagc       300
     gtttaattac tgtaaagatg agtgttgaaa aaccatagag accagtagta gatatcgagt       360
     aaaccaaatg aaaaagagac aggtttcccc cactgagcgt tgacgagagt tcgcataggg       420
     gcatgtcatg aacatccgta aaagtttgca gaataaagcg ttgacgagag tccgtcattt       480
     aagacactag caatagcgca cgtgatggaa tagggaaatt gtaatgcgtt tagataacca       540
     tttatgattt cggtgcgagc attcccacat gttgatcacc cgcgatataa ctaattacaa       600
     tccaggagtt catacactct ctgggaagag cttgtcacaa gaaacaagaa agttctagag       660
     gttaataaca aacaataaat ggttgtatgt atggccaaag gatgaactgg gaaagtcatt       720
     tatcactgaa gaggctcaag taggcagatc agtatgtcta ctaaaatata gtgacaattg       780
     gatggttgta tacgcaacaa agtattttat caattcgttt caatcgatac ttttcagata       840
     cctaatcgtt atgtcggcaa acgggatgta tgttcgcgca ccagatgcgt atatggatga       900
     ggaggagtcc gagttatatg tggtcgagtc ccaatattcg gacgatctga actcctgtca       960
     acttggtgcg aatgaggtag tagggataac tgagcccatc gacaccgatg gtgaaggcga      1020
     gcctcaatcg gccgaggagg tcatgtggtc aacagaagac gatccgaatg caaccataat      1080
     ggaaaaaaat caaaaagacg cttgctcaac gaatgcacac attgatgaga gacttgaccg      1140
     tctggagaga atgatgctcg aattagcaag ttcccataca acttcagcaa ggaacgtacc      1200
     ggttgagcaa aacgagatcg gttggggatt tgctaaagaa acgggatctc aaggtgctgg      1260
     ttattcgtcg attcgaatgg aaacgattcc cccatttccg aaagacgttc cggcgaataa      1320
     actttgggaa gcttggcaag agtttctcga aaattttgag attgctgtgt cattatcgca      1380
     tcctctcgat cccgtacgcc gtgcaaagct tttgtttgta tcaatggggc gagaactaca      1440
     aggcattgtg cgcgctgcga aacttcgccc gaaccttaat gaggcaacat gctattcgac      1500
     ttttgtcgag aacatcgaca gacatttgaa ggcaatgacc gacacatcgg ccgagcacga      1560
     ggcatttact tccatgaaac aagagaaagg cgagtcagcc gtatcgttcc attcgagact      1620
     aatggaaaaa gttcgactgt gtgggtattc accatcggac caggagcgat tcgtacgagc      1680
     ccaactgttg aaaggactgg ccaatcgaga gctggccaaa ttgtcgcgaa cgtttggata      1740
     cgagactaat ttcgttgtgc aatcggccac tcgcgatgaa gcttatgata gagaaaccag      1800
     acatgaggct ccagatgtgt atgccatcac acagacgaaa tcagaaccag gagcaaatcc      1860
     aggaccggct tggaaacgtc cacgcacgaa cgaatcaaac cgacgagctg tacatgcccg      1920
     agacaatttt cggaaagggc gacgattccg ctgttccagg tgcaacagat tggctcataa      1980
     tggaggtcca tgcccagccc taggccggaa gtgccgcacc tgtgggatgg aagaccattt      2040
     tgcagcagct tgtcgagaca ggaggaagac tgccggtgct ctaagaagag atgaaagaac      2100
     gtccaatgat gccgaacagg tatgatgagt tcaataagga ataaatagag aaataaaaat      2160
     aaattttctg aattggttta tctcaagacc atgaatgtca tttattttaa ggagcaccta      2220
     tccccttttt caggaaatta acgcgattac tctcgacgat gtaacggtca actgccgggt      2280
     gggtagatct acaccgatta gttttttgat tgactcggga gccgatgtta atgtcatcgg      2340
     tggctcagat tggtccgttt tgtatgatca gtaccaaaag ggattggtag acttggacat      2400
     catgaacacc cagcctaacc aggaactgcg agcttacgcg acctcaaacc ctatgacagt      2460
     gaaatgttct ttccgtggga cagtagaaat cgttggttcg tcaaaaccag tagtaaaggc      2520
     acttttcttg gtagtcagtg aaggtcggcg atccttatta ggaagaacaa ctgctggaga      2580
     aatgaaacta ctagaggtag gcctagcagt taacaactgt gacacagttc agccagagat      2640
     ttttccaaag atgccaggtg tgattgtaaa attcagcgtt gacaagacgg taccgccagt      2700
     taaaaatgcc tactttaatg taccggcagc atatcgcgag ggagcaagac ttcgtttatg      2760
     tgatatggag aagcaaggta tcattgaacg agtagctggc gcccccgggt ggattagcgg      2820
     aatgtccgcg gtcccaaagg gtcaaaatga cttcaggttg gtcgtcaaca tgcggtcggc      2880
     gaataaggct ataaaaaggg agtattatcg actccctctg ttggatgaaa tgaaaatcaa      2940
     gctacacgga gccaagcatt tcacgaaact tgacttgagt aatgcttatt atcacttgga      3000
     gttgagtgaa gagtcgcgcg acctcacaac gtttatgacc gagaacggca tgtatcgttt      3060
     tacccgatta atgttcggtg taaactgtgc tccggaaatt ttccagagag aaatgtgtcg      3120
     tattcttgag ggcgaagaca atataatcgt ttacatcgac gatgtactta ttttcgccaa      3180
     ttctcccgag caactccgaa aaatcaccag ccgtgttttg gagatcctgc gtaaaaataa      3240
     cctaacgctc aataaatcga aatgtgagtt cgagaaaact caaatcaagt tcctaggtca      3300
     cgagcttgac gaggacggat ttcacgtcga taaggcaaaa ataaaggaca tagaaaactt      3360
     tcgaccaccc actactggat ccgagcttcg aagctttttg ggattagcta cgttcattag      3420
     cccgtacata gacaacttcg ctaacatcac acacccactc tgggcagtat cttcaagtag      3480
     gacttggacc tggggcccac agcaacaaaa agcgttcgaa gaaattaaga acaaaatcac      3540
     gcattgcact acaacgctgg gatatttttc agaagaagac aggaccataa tttacacgga      3600
     cgcttccccc gatgctctcg gagcggtgct ggtgcagcaa caggaaggac atcctccgag      3660
     aattataagt tttgcatcga aatcgttgac tccaacagaa aagaagtatg cccaaaacca      3720
     gcgtgaagca ctcggagcag tttgggctat tgagcatttc tccttctttc tactcgggag      3780
     acaatttacg ctgcgcaccg atgcagaagg cataaccttc atcttaaatc ggacacgcga      3840
     ggattcaaaa cgagcgttaa ccagggctga tggttgggcc cttcgcctca gtccttacaa      3900
     ttatgatgta gagtttgtca aaggtcggga taacatagct gacccctcat cccgattgta      3960
     tgttggagtt gatgagccat tcgatgaaca gaagagtcca tgggaggtag cctgccttga      4020
     ttcaaacaag ggaggtttct tgactgtaga tgaaataagg aaagccaccc taaacgaccc      4080
     aatattgcaa aaagtacgtg cgtcagtaga gtcgggcgat tggccggcgg atctgaataa      4140
     atttaaagcc gttacgcgtg aactgtccct acgtgatggg ctgctaatca aaaacggctg      4200
     cgcagtaatc ccagagagct taagggaaag gactttggaa ctggctcacg atggccaccc      4260
     tatgacagct aaattaaaaa gcatcctaag ggaacgcgta tggtggcccg gaataacttc      4320
     tgatgctgaa aaatgggtac aatcttgcaa aacgtgtgct gttaatggca aacccgagaa      4380
     accgacgcct atgaaacgga tatttgcacc tcaatccgta tgggaaacga tcgccctaga      4440
     ttttaatggg ccatacgtca aacatggtgg aatatccata ctggtgattg tagattatcg      4500
     atctcggtat ttgattgcac gcccggtcaa gtccactagc tttgaccata ctaaacgagt      4560
     attggaagat gtcttcgcta gagaaggttt cccggcgacc atgcgttccg ataacggccc      4620
     accgttcaat agcacggaat ataagcaata ttgtgcacag agaggaatac aaaccgtatt      4680
     ttccactccc ctatttcccc agcaaaatgg gatggtagaa aattatatga aactcataaa      4740
     ccgtgcgatg gcatcagcta ccgaaaacaa cactaaattc acggatgagc ttcaagcagc      4800
     tgtgaatgca cacaacgcag cagcccattc cataacagga ataccgccgg aagaagttct      4860
     gatgggccgg aagatcaagc gacgtttacc actcgtggat tataaaagag ccgaatataa      4920
     cgacgaaact ctgaacgcga aggataagaa agcaaaacta ctcgggaagg agagagaaga      4980
     tgcacgtcgc ggggctcgag aatgtcgagt taagcctggt gatacggtca ttgtcgagcg      5040
     ccagaacaaa gctaaaggag aacccagatt tgataataac aagttcactg tccttgaaga      5100
     agttaacggt aatctcacct tgagtagcaa tggactgaca ctcaaaagac acgtcactca      5160
     aacgaagaag gttggagatt ggcgtaacga aaccgatgat gaaacgcgaa atgattctgc      5220
     tgttgacgag tcagggaaag agtcccatcg accagggtgc caaaggaaac agccagcata      5280
     tttgcaaaat tacgtgagga ctgtgagtga tgactgatgc aggcttgtat cacaaacagg      5340
     gtcagaaaag ttaaattaax xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      5400
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      5460
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      5520
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      5580
     xxxxxxxxxx xxxxxxttaa atgtttgaac cggtacgatt ttttggaaac gattattgcc      5640
     cctattcttg aatagacaaa aacaccgaaa cgactgcaac actagaagcc ccaccttaca      5700
     cacctgaaaa gaaaagaaag aagaaattta gcaacaaact tacattttca cttacctgtc      5760
     gatttgagtg agaaactcga gactcagctc atgatcaatg ctttgatcga agccgttcct      5820
     cattcaacta agggattttt ttatcaccag gaacattgat tggaacggga aaatagtttt      5880
     aatgtccact ttctttgaat agtttcaact tctgtttcaa cagttgcaac agcaggacgg      5940
     tgaaaatttt tgacgttttg accaggtaaa caaaacaaac ggagagctaa taggcctgtt      6000
     catggaagaa aagcaaatcc tgcttagagc caatagacct gttcatgatc atttgagatg      6060
     aaaggcctgt tcatggttta gttttttttg gactacacgg aaaagtattt tctactaaga      6120
     atataagttt aaaacaaccg aagtttatgt aaattgggta aaatcgaatt tgggtaaacg      6180
     catcgatttg agggtcagct tacgtgaaga aaagctaatt ttaagctggg ggttttaaat      6240
     gcatagctca aaagacctgt ccgtaagatt tacgttctga aagtttcaaa ttacaaaaaa      6300
     aaattaggaa caaggaggga ga                                               6322
//
ID   Gypsy-29_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   supercont1.18;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_AA_;
KW   Gypsy-29_AA-I; Gypsy-29_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.18; Positions  752756  752529.
XX
SQ   Sequence 228 BP; 57 A; 56 C; 59 G; 56 T; 0 other;
     tgtgtgtatg tggaacaacc ctacataatt ggagatgtga gatgtgtcaa catcacatct        60
     gtaacgcatc gggtggaacc aatacaaatg caactcaggc ctcgtgcccg attacgcatt       120
     gggctcggcc tctttcttgt ttcagccatc aaccggagta gacgtatcta aggtgagtag       180
     cagcgctcca tgatgggatt ccgctggcgt catcggcgga atcacaca                    228
//
ID   Gypsy-29_AnFu-I repbase;    DNA;    INV; 5872 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5872
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2914-2914 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1064..2194
FT                 /product="Gypsy-29_AnFu-I_1p"
FT                 /translation="MLSKIRQYIKRLQEIEEKLKPGGKKFRKCLIEQYNIS
FT                 AYDSYVKIKHLASRLKDTDAAEEIEAINKSANSYYNNILSYINFQLQNRVH
FT                 FKLKTLAKVSIVLNRWKPHKMEDFDIKTAATLVQLYDGNPDSLENFLGSAN
FT                 LLKKLYPKDTKQILVEFLKTRLTGKAQFGLAPNITDFETLINDVKERCQER
FT                 INPDKLIGELKSIRYTDTKCLCKEVETLSTKLKIMYLKQSIPEKVANDMAI
FT                 KRGVETLIEKVKHAETKIILQAGQYSSILDATEKVLESERIHSSTQVLSFR
FT                 GNNYNTNRNPNRYTSNTYNHRQQYRGNSNGYRQTPNRYQRNNFSNQSNRQF
FT                 FGNTNRKNNRVYSAQNTEEYNFLEESQQPTDCQS"
FT   CDS           2155..5826
FT                 /product="Gypsy-29_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFRRKPAAYRLPILAVNLNANNYIKIKLEMAYNDFSE
FT                 LIVDTGADVSLFKINKIKPNHPIHSQNKINLKGITTHSIDTLATTHTTMNF
FT                 GDAYIKHQFHVIPKEIDIGADGILGRDFFANYRCIIDYEHWLLIFNHNGST
FT                 VCHPIEDKHNDGFVLPIRSEVIQKVNLPNINEESIVLAEEIRPGVFCGNSI
FT                 ISKENQYVKFINTTENNVFISKRSFRPQIDLVKNYNVKTQSPPSSVSSTSR
FT                 LKTIINTIDTSNVPQYIKNDLENLILKYTDIFCINEDQITTNNFYTQSIQL
FT                 KDNTPCYIPNYKQIHAQAEEIKTQVDKMLKDDIIEHSVSSYNSPILLVPKK
FT                 SGEGKKWRLVVDYRQLNKKIMPDKFPLPRIDAILDQLGRAKYFTTLDLMSG
FT                 FHQIPLDKESRKYTAFSTSAGHFQYKRLPFGLNISPNSFQRMITIAMAGLT
FT                 PDSAFVYIDDIIITGCTVKHHLQNLIKVFDRLRQYNLKLNPEKCKFFQNSV
FT                 TYLGHKITDKGIYPDETKFDTIKNYPVPQNVDEVRRFVAFCNYYRKFVRNF
FT                 AEVAKPLNSLLKKGATFNWSTECQYAFDTLRKNLISPTILQYPDFEKEFIL
FT                 TTDASDIACGAILSQITNGNDLPIAYASRTFTKGEKSKPTIEKELAAIHWA
FT                 VNYFKPYIFGKKFRVRTDHRPLVYLFNMKNPTSKLTRMRLDLEEFDFEVEF
FT                 VQGKMNTGADALSRIVTDSQQLKSMQESANAIRENAVLLATTRSMSKSLKE
FT                 GRQPEQKVQEHISEPTLWLTENPNEVNKLLKVRSEVNMNTIKIALFNNNYN
FT                 KELGNIKIILNQNGSQALEAALLQLSQLAKKYNRNRIAISTEDILFQYYSI
FT                 QTLKEIANMAISGFEIVAFTPPSWISKREEIQNILENYHMSPSGGHVGQYR
FT                 LYLKIREKFKWKNMKDEIKKFVNDCETCKVNKATRHTKEKSVITTTPTRPF
FT                 DTVSIDTVGPLPKTPKNNRYAITIQCDLTKYVVLIPTQNKEANTVAKALVE
FT                 NLILTYGKFIEIRSDQGLEYNNEVFKKLTEILGIKQTFATAYHPQTIGGLE
FT                 RNHRTLNEFLRSFTNEHGDDWDNWIKFYEFTYNTTPHTDTGYTPFELLFGR
FT                 KANLPQDVVTRNIEPVYNHEQYYNELKYKLQKSNGIARKKLIDQKEKRQAA
FT                 ENCKINPLIIKPGDVVYLKNENRKKLDPLYLGPYVVSKIQEPNCTIVNKYS
FT                 KKESTVHKNRLIKG"
XX
SQ   Sequence 5872 BP; 2318 A; 1117 C; 1056 G; 1381 T; 0 other;
     tggcgaccgt gatcatgtaa tgtacatgac gacgcgaact acaaaaaaaa aaatcattca        60
     aaatagtaac ggtacagtgt gtaagttgca acaagaatag taactattaa ccgtaaagct       120
     accaccacaa attcggagga actacgctaa cgatataagt gcaacgaccg atgaacgtac       180
     gggcaaccga tcgctcaaat tgatccccca acggtgagaa aaagtgtcgt aggacgaaac       240
     aggcaggatc attaaggatc ccatcaacga cgatagcgag agcgagagag tgtcagtgat       300
     caacgttaca agtgcaaagt atgaccgtaa gcaaccgtaa gcacaaagag tgaagaatac       360
     gctgaacgag taaaacgata tgtgaacgag tgagtgaaga atacgttgaa cgagtgaaaa       420
     ataagccgaa agagtgaacg agattgtgtg acaagcagga aaccgaaaat gtgagcaaaa       480
     ctttacgaca gtagtggata accgaagagt gactaacgca gaacattgac gatgagaaca       540
     gtacgggcaa tgacatcaca gcgagctatc cggaagatcc ttacgaacgt gaaggaatga       600
     gtgatcgact gagagatcta caatctacga cgggcggcag tatcaccagg aaggaatgag       660
     tgatcaactg agagtaacct acgacgggca gcagtaacaa catcgaacga agatagcgga       720
     acaaacgata gtgtgcgata attccccatg cgtgagtaaa aaaaaaaaaa aaaaaaaaaa       780
     aaaaaaaaaa aaaaaaaaaa aaaatcgtag atcaattagg cttgaacaaa gtagtttagc       840
     aaatatctat tataaatttt ccgaaaaata ggtaatattt tgtaattggt caattatttt       900
     tttccgctgt tcaatgtcac tcgggaatat atacacatac atacgtaatt aagcacattc       960
     atattgcctc tcactacact ccatacaata ctacaatcac tcactctcac aacactgaaa      1020
     aatgctcata aaagttatac cgtcattcca catgctcgca taaatgctgt ctaaaatacg      1080
     tcagtacata aaaagattac aagaaattga ggaaaaatta aagccaggtg gtaaaaagtt      1140
     ccgcaaatgt ctgattgaac agtacaatat ttccgcatat gactcgtatg tgaaaattaa      1200
     acacctagca tcccggttaa aagatacaga tgcggcagaa gaaattgaag ccataaataa      1260
     atctgccaac agctactaca ataacattct ttcatatatt aacttccagt tacaaaacag      1320
     agttcacttt aaacttaaaa cattagctaa agttagtatt gtgctaaatc gttggaaacc      1380
     tcacaaaatg gaagatttcg atataaagac tgctgcgaca ctggtgcaac tgtatgacgg      1440
     caatcccgac agccttgaaa attttttggg ttcggcaaac ttattaaaaa agctttaccc      1500
     aaaagatact aaacagatat tagtagagtt cctcaaaaca cgattgacag gaaaagcaca      1560
     atttgggcta gccccaaaca ttaccgactt tgaaaccctt attaacgatg taaaagaacg      1620
     gtgccaagaa agaataaatc cggacaaact aataggagaa ttaaaatcaa tccgctatac      1680
     agataccaag tgcttgtgta aggaagtaga aacacttagc acgaaactaa aaataatgta      1740
     tctaaaacaa agtattcccg aaaaagtcgc gaatgatatg gcaattaagc gaggtgttga      1800
     aacactaatt gaaaaagtaa agcatgccga aacaaaaata atattacaag cagggcagta      1860
     ttcttccata ttagatgcaa cagaaaaagt gctagaaagt gagagaatcc acagttcaac      1920
     acaagtcctc tcgtttagag gaaacaatta caacacaaat agaaacccaa atagatacac      1980
     aagtaatact tacaaccaca gacaacagta tagaggcaat agtaacggat ataggcaaac      2040
     acccaataga tatcaacgga ataatttctc taatcaatcc aacagacaat ttttcggaaa      2100
     cacaaacaga aaaaataata gagtttattc tgcacaaaac acagaagaat ataatttttt      2160
     agaagaaagc cagcagccta cagactgcca atcttagcag ttaatttgaa cgctaataat      2220
     tacattaaaa taaaattaga aatggcatat aatgatttta gcgaactcat agtagatacc      2280
     ggagcagatg tatccttgtt taaaataaac aaaattaaac ctaaccaccc gatacactcc      2340
     cagaacaaga ttaatttaaa aggtattact acacactcaa ttgatacgct agccactacg      2400
     catactacca tgaattttgg tgacgcatac attaaacacc aatttcatgt tataccaaaa      2460
     gagatagata tcggcgcaga cggtatactg ggaagagatt ttttcgctaa ctataggtgc      2520
     ataattgatt acgagcactg gttattaatc ttcaatcaca atggctcaac tgtctgccat      2580
     cctatagagg acaaacataa tgacggcttc gtgctgccaa taagaagtga ggtcatacaa      2640
     aaggttaatt taccaaatat aaacgaagaa tctattgtgc tagctgagga aatcaggcca      2700
     ggagtatttt gtggaaattc tatcatatca aaggaaaatc aatacgttaa gtttataaat      2760
     actactgaaa ataatgtgtt tatcagtaaa agatcattca gaccccaaat tgatctagta      2820
     aaaaactata acgtaaagac gcaatctccc ccttcttctg tctcctcaac ttctaggctc      2880
     aaaactataa ttaatactat agatacatca aatgttccac aatatattaa aaacgaccta      2940
     gaaaacctta tattaaaata tacggatata ttttgcataa atgaagatca aattaccaca      3000
     aacaattttt atacacagtc gatacagttg aaagataata caccatgtta cattccaaac      3060
     tacaaacaaa tacatgcaca ggctgaagaa ataaaaaccc aggttgataa aatgttaaaa      3120
     gacgatataa tcgaacactc agtttcatcc tataactccc ccatattatt ggtgccaaaa      3180
     aaatcgggag aaggaaaaaa atggagactc gtagtagatt accgacagtt aaataaaaaa      3240
     ataatgcctg ataaatttcc actgccgcga attgatgcaa tactagacca actgggtaga      3300
     gcgaaatact ttacaactct agatctcatg tccgggttcc atcaaatacc gctggataaa      3360
     gaatcgagaa agtatacagc attttcaacc tctgcgggac actttcaata caagaggtta      3420
     ccctttggct taaatattag cccaaatagc tttcaacgca tgataactat agcgatggcg      3480
     ggactgacgc cagatagcgc atttgtttac atagatgaca tcatcataac aggctgtaca      3540
     gttaaacacc atcttcagaa tttaataaaa gtgtttgata gactgcgaca gtacaacctg      3600
     aagctcaatc cggaaaaatg caaatttttc caaaatagtg tcacctattt gggtcacaag      3660
     attaccgata agggtatata tccggacgag actaagttcg acacaattaa aaactaccct      3720
     gtgccacaaa atgtggatga agtcagaaga ttcgtagcct tctgtaacta ctaccgcaag      3780
     tttgttcgca actttgctga agtagcaaaa ccgctgaata gtctattaaa aaaaggagct      3840
     acatttaact ggtctaccga atgtcaatat gcttttgaca cccttaggaa gaaccttata      3900
     tcacctacta tattacaata tccagatttc gaaaaagaat ttatattaac cacggacgca      3960
     tcagatatag catgcggagc catcctttct caaattacta acggtaatga tcttccgatt      4020
     gcatatgcca gtagaacctt tacaaaaggg gaaaaatcga aaccgaccat tgaaaaagag      4080
     ctagcagcca ttcactgggc tgtgaattat ttcaaaccat acatttttgg aaaaaagttc      4140
     agggttcgaa cagatcatag gccactggtt tatctgttca acatgaaaaa ccctacatca      4200
     aagctaacac gaatgagact agacctggag gagtttgatt tcgaggtcga attcgtgcaa      4260
     ggaaaaatga acacaggggc agatgcattg tcaagaatag tcactgattc ccaacaactt      4320
     aagtcaatgc aagaaagtgc aaacgccatc agagaaaatg cagtattgtt agctaccacc      4380
     agatcaatgt caaaatcact taaggaaggg cgacaaccgg aacagaaggt acaagaacat      4440
     atatcagaac ccacgctgtg gttaacagaa aacccaaacg aggtaaataa actgttgaaa      4500
     gtgcgatccg aagtaaatat gaataccatt aaaatagcgc tcttcaataa taattataac      4560
     aaggagttgg gcaatattaa gatcatactt aatcaaaatg gaagtcaggc actcgaggct      4620
     gctcttctac aattgtctca gctagcaaag aagtacaatc gcaataggat agctatttct      4680
     acagaagaca ttttgtttca atattactcg atacagaccc taaaggaaat cgcaaatatg      4740
     gccatttccg ggttcgagat agttgcattc accccaccca gctggatttc aaaaagggag      4800
     gaaattcaaa atattttaga aaactatcac atgtcgcctt cgggaggaca tgtcggtcaa      4860
     taccgcttat acctcaaaat acgagaaaag tttaaatgga agaacatgaa ggatgaaata      4920
     aaaaaatttg tcaatgattg tgaaacatgt aaagtgaaca aagcaacgag gcacactaaa      4980
     gagaaatccg ttatcacaac gacacctact cggccattcg ataccgtctc aatcgacaca      5040
     gtaggacccc ttccaaaaac gccaaagaac aacagatacg ctatcaccat acaatgtgac      5100
     ctaacaaaat atgtggtatt aataccaaca caaaacaagg aagcgaacac agtagcaaag      5160
     gcgttagtcg aaaatttgat actaacttat ggaaagttca tagaaatcag atcagaccaa      5220
     ggattagagt ataataatga ggtgtttaaa aaactaacgg aaatattggg catcaaacag      5280
     acatttgcga cggcatacca tcctcaaacc ataggcggcc tagagcgaaa ccacaggact      5340
     ttgaatgaat tcttgagatc tttcactaac gagcatgggg acgattggga taactggata      5400
     aaattctatg agttcacata caataccacc ccacacacag acactgggta cacaccattt      5460
     gaactgttgt ttggaagaaa agcaaacctt ccacaagatg tagtgacacg caatatagaa      5520
     ccagtataca atcacgaaca atattacaat gagttaaagt ataaattgca aaaatccaac      5580
     ggaatagcgc gaaaaaaatt aattgaccaa aaggaaaaaa gacaagctgc agaaaactgt      5640
     aaaatcaatc ctcttataat taaaccagga gatgtagtat acctaaaaaa cgaaaacagg      5700
     aagaagttag atccattata tctaggtcca tacgtagtat ctaaaataca agaacctaat      5760
     tgcactatcg taaacaaata tagcaaaaag gaaagcactg tacacaagaa cagattaata      5820
     aaagggtgaa aatctatact gtacgatttt catttttaaa aaagggggga gg              5872
//
ID   Gypsy-29_AnFu-LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-430
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2842-2842 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 430 BP; 165 A; 57 C; 100 G; 108 T; 0 other;
     tgtgacgcct acgcataggc aatgcgaagt cgcaatataa atataagttt atagtaagca        60
     aatataaaaa taagttatag taagaaaacg actaggaaag aatagggcag gaacagggac       120
     gccacgattg gctaatgagc agtactggta ggatagaata ggatagcgag taaatacgat       180
     agggatagac ttataggctt aggtagaatc ataattatta cataagtagg ctagactatt       240
     ttacataagg gaattggata taaatagggt gtcggtggca aagaacgaca gaaaaaaggt       300
     tcgaacgaaa tacgaggaaa ctctgcccga tcgcgaagcg ttgtaataaa agtttagttt       360
     ttaaagtata tcacgtcaac ctccagtgtt attttgtggt cgtaaatagt tacatttaaa       420
     acatatcaca                                                              430
//
ID   Gypsy-29_AnMe-I repbase;    DNA;    INV; 5991 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5991
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6841-6841 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..1548
FT                 /product="Gypsy-29_AnMe-I_1p"
FT                 /translation="MNPKVLALRNRTVKINNGNVDKIHSTNLQHNLNSTTN
FT                 SDQCLHKEYNYTEHLRILKEDFFNQSIEIERALNTTIHKMAYEFPLERAML
FT                 CIPEYNGNANDLDGFLYQVEFFAKQIPAGESEEDLIRTVMFKLKGSAAGFF
FT                 NRILDESWVKVKTNLIKLFGEKMSLEAIFQQVETLQQGGNEAFSAFKERVL
FT                 KLKENIINADKNNTEDSYAIRNLKIHFLAGLRNSELQTLARMNKHLDFDEL
FT                 LEYLEDEVVQIEHMRKIETRLNRSEAHNTPQTSYCSGSSAQGVIDERNLQQ
FT                 EECSANSFRRCNNSTNFTNPSNSNSFWQSQHNSTAYNTNTRNINSNFSRPR
FT                 RYFAPHSSSYHNNYTQLTPSHNSTQPQNYYTQHFSQQTPPQNQHENNNSRG
FT                 QNQYYHQPLNSNTHTKN"
FT   CDS           1488..5003
FT                 /product="Gypsy-29_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FTGAKSILPPTIEFQHTYKKLNQGTLCAETVMNSVPK
FT                 KQKNLFLLSPKEEYMDNIEEVPNVCGNEYESLDIEFTSDGKLMVHILSQSS
FT                 KKLMIKYLIDSGACFNALSWESAKELGPSSINYNDKVTLSGFDGTLSETIG
FT                 SIYVNLNVGKSLYAIKFYILKTLSVPGIIGASFLRKYTLGIGKKFENIHLQ
FT                 KNINENEKEKGSEEASMNEEDCTLIDNQEKNELLSHMEKQLSDCDVVETSK
FT                 EEELVGSERYRELVKKINFTHLDSTKTNIIQQIIAKYTDIFHLPGDKLTFT
FT                 KAAMHEIETNSNIPIYKRQYRFPAALNNIMEEQIEEMLKQKIIRPSKSPWN
FT                 APVMCIPKKSEDDQGEKKYRIVVDFRALNLITKPFVYPIPRIDDIMDNIGN
FT                 SKFFSTIDLKSGFFQIPIALKDAAKTAFSTAKGHYEFLRMPMGLKNSPSTF
FT                 QKLMNTVIYTIQPIKAFVYLDDIVVFGDSIEEHTNNLLKVFNALRNHNLKI
FT                 EPSKCKLLHKEITYLGHTIKETGIKPTQANVKTILDMHTPKTLKEVRSFLG
FT                 MINFYGKFIPNVSDIRKPLHELLKKNAEFIWDKNCDEAFKTLKNLLISEPI
FT                 LVRPNFEDCFVITTDASDYALGAVLSNEKTVECPIAYASRSLVGAEKRYHP
FT                 IEKELLAIVWAVEHFKHYIYGNKFIVYSDHRPLVSIWRLRENSPILSRLRL
FT                 RLQGLECEIRYKKGKENVVADFLSRLPELKSSENQKEEENNTVAVFTRQQK
FT                 KLLMNPNQGKKQKEKVEENNNIPEHEDHWQQLLKLDVQKETSTEELKRTEK
FT                 LEKNKQTLKSKFQNYNPGTERIQIEKHEVDTVLKEFHDSPVGGHVGVKRMK
FT                 KRIKELFFWAGMDRNIEGYVKSCKSCQLNKIGRYNKIPMQITTTSTFPFEK
FT                 LYMDIVVLPESERGNKYGLVIQDDLTRYLIVTPIANQEATTVAKAFVEHVI
FT                 CLVGAPVELVTDQGTNFMSAIMKEACKLLKIKKINTSAYHPQGNIVERANR
FT                 ELKIYLRQFVGKNYKVWDEVLPYFSLQYNTCINSSTGYTPYELVFGRKARL
FT                 PTSIYKQIDRKRMYSDYSEELIRNMAETHFIARENLIKSKEKRKLIYDQNA
FT                 IEWQPMWGEMVLVRNNQIGVGQKLQGLWRGPYEVVEIPSDQTCIVRNGKKL
FT                 EKVHNNRLKKFNS"
XX
SQ   Sequence 5991 BP; 2369 A; 955 C; 1117 G; 1550 T; 0 other;
     tctggtgaca gcggtaaagc gcctactttg tagcgcacgt aacgttattt ctggctggtg        60
     ttctaagtga tagtgtaaaa gtaaaggtat aaagtatgtg gtgaaggtaa attgcagcgt       120
     catagtgtta agtgctaatt atgatctaat tattaaaaaa atcatttttc tttcgtgtaa       180
     ctaagttaac aacagtttat ttttattact atcattacaa tcatagtcat cataatcggt       240
     aggctaatca aattagttgg taaatttttg caaccataat ccgtcatttt attttagccg       300
     cgtacgtaga gagtaatgaa ccctaaggtg ttggcgctta gaaacaggac tgtcaaaatc       360
     aataacggta acgtggataa aattcattca acaaatctgc aacacaatct taattcaact       420
     acaaatagtg atcagtgtct acacaaagaa tataattata cggaacacct cagaattctt       480
     aaggaagact ttttcaacca gagtattgaa atcgagcgtg cattaaacac tacaatccac       540
     aaaatggcat atgaatttcc actcgaaagg gcaatgttat gtatcccgga atacaacgga       600
     aatgcaaatg atttagatgg atttctttat caagttgaat tctttgctaa acaaatacca       660
     gcgggtgaat cggaggaaga tttaattcga accgtaatgt ttaaattaaa aggtagtgca       720
     gctggtttct ttaatcgcat attagacgaa tcgtgggtaa aagtaaaaac aaaccttatt       780
     aagctgtttg gagaaaaaat gagcttagaa gccattttcc aacaagtgga aacactacag       840
     caagggggaa atgaagcttt ttccgcattc aaagaaaggg ttcttaaact caaagaaaac       900
     ataattaatg cagataaaaa caacaccgag gactcgtacg ccatacgaaa cctaaaaata       960
     cactttttag ctggtttgag aaattcggaa ctgcaaacac tggcgagaat gaacaaacac      1020
     ttagatttcg atgaactttt agagtatttg gaagatgaag tggttcaaat tgagcacatg      1080
     cggaaaatcg aaacaaggtt gaatcgctca gaagcgcata atactcctca aaccagttac      1140
     tgtagtggct catctgcaca aggcgtgatt gacgaaagaa acctgcagca agaagaatgt      1200
     agtgccaata gttttagacg ctgcaacaat agcactaatt tcactaaccc ttcaaattca      1260
     aatagttttt ggcaatcaca acacaatagt acggcatata acacaaatac tcgtaacatt      1320
     aacagtaact tttctcggcc aagaagatat tttgctccgc atagtagttc ctaccataat      1380
     aattatacac aactaacacc atcacacaat tcaacacaac cacaaaatta ttatacacaa      1440
     catttttcac aacaaacacc accacagaat caacatgaaa ataataattc acgggggcaa      1500
     aatcaatatt accaccaacc attgaattcc aacacacata caaaaaacta aatcaaggaa      1560
     cactatgtgc tgaaacagta atgaatagtg ttccgaaaaa acagaaaaat ttatttttgc      1620
     tcagtcctaa agaagaatat atggataaca tagaagaagt accaaatgtc tgtggaaatg      1680
     aatatgaatc attggatata gaatttacta gcgatggtaa actaatggtt catattttat      1740
     cgcagagctc aaaaaaatta atgataaagt atttaattga ttcgggagct tgcttcaatg      1800
     cattgagttg ggaatcggca aaagaattag ggccttcttc cataaattac aatgacaaag      1860
     taacattgtc agggtttgat ggaactttgt ccgaaaccat tggctcaatt tatgttaatt      1920
     taaatgttgg aaaatcttta tatgctataa aattttacat acttaaaaca ctcagcgttc      1980
     caggaataat cggagctagt tttttaagaa aatacacgtt aggaatagga aaaaaatttg      2040
     aaaacattca tttgcaaaag aatataaatg aaaatgagaa agaaaaaggg agcgaggaag      2100
     cgagtatgaa tgaagaagat tgtactttga tagacaatca agaaaaaaat gagttgctct      2160
     cacatatgga gaaacaactc tctgattgtg atgtggtcga aacgagcaag gaggaagagt      2220
     tagtcggttc agaaagatat agagaattag taaagaaaat taattttaca catttagata      2280
     gcacaaaaac aaatatcatt caacaaataa ttgcaaaata caccgatata ttccatttgc      2340
     caggggacaa acttacattt actaaagcag caatgcacga aattgaaaca aattccaata      2400
     tacctatata taaaagacag tacagatttc cagctgctct gaataatatt atggaagagc      2460
     aaatagaaga aatgcttaaa cagaaaataa taaggccaag taaaagtcca tggaatgctc      2520
     ctgtcatgtg cattcccaaa aaatctgagg atgatcaagg agaaaaaaaa tatcggatag      2580
     tagtcgattt tcgtgctctc aatttaataa ctaaaccttt cgtatatcct attcccagaa      2640
     tagatgacat catggataat attggcaata gtaaattttt ttctaccata gatttgaaat      2700
     ctggattttt tcaaataccc atcgcactta aagacgccgc aaaaacagct ttctctacag      2760
     ctaaagggca ctatgaattt ttaagaatgc caatgggcct caaaaacagt ccttcaacat      2820
     ttcagaagct gatgaacact gtgatttaca ccatacaacc aattaaagct ttcgtttact      2880
     tagatgatat tgtggtgttc ggggattcaa tagaagagca caccaataac ctactaaaag      2940
     tgtttaatgc tttaagaaat cacaatctca aaatagaacc gtcaaaatgc aaattactcc      3000
     acaaagaaat aacatattta ggccacacta tcaaggaaac aggtattaaa ccaacacaag      3060
     caaatgtgaa aacaatttta gacatgcata caccaaaaac cctgaaggaa gtacgatcgt      3120
     ttttaggaat gataaatttt tatggtaaat ttataccaaa cgtttctgat attagaaagc      3180
     ctttgcatga gcttttaaag aaaaatgctg aattcatttg ggataaaaat tgcgatgaag      3240
     catttaaaac gttaaaaaac ctacttatct ctgaaccaat tctagtgcga ccaaattttg      3300
     aagattgttt tgtaattaca acagatgcta gcgattatgc tcttggagca gtattatcga      3360
     acgaaaaaac agtagaatgt ccgatcgctt atgccagtag atccttggtt ggagccgaaa      3420
     aacggtatca ccctattgaa aaggaactat tagctatagt atgggcggtg gaacacttta      3480
     aacattatat atatggaaac aaatttatcg tatattccga tcataggccc ctagtctcta      3540
     tatggcgcct tagagaaaac tcgccgattt tatctcgact taggttgcgc ttgcaaggat      3600
     tggaatgtga aatacgatat aagaaaggga aagagaacgt ggttgccgat tttttatctc      3660
     ggcttccaga gctaaaatcg agtgaaaatc aaaaagagga agaaaacaat acggtagctg      3720
     tgttcacacg ccaacaaaag aaacttctta tgaatcctaa tcaaggtaag aaacaaaaag      3780
     aaaaagtgga agaaaataat aacatccctg aacatgaaga tcactggcaa caattattaa      3840
     aattagatgt acaaaaagaa acaagcactg aagaactaaa gaggacagaa aagttggaga      3900
     aaaacaaaca aacacttaaa tcaaaatttc aaaattataa cccggggaca gagcgaattc      3960
     agattgaaaa acatgaagta gatacagtgc ttaaagaatt tcatgactct ccggtaggag      4020
     gacacgtggg tgttaaaaga atgaaaaaaa ggataaagga gttattcttc tgggctggta      4080
     tggataggaa tattgagggc tacgtaaaaa gttgcaaatc ttgtcaatta aataagattg      4140
     gtagatacaa caaaattcct atgcagatta ctactacatc aacttttcct tttgaaaagt      4200
     tgtacatgga tattgtagta ctaccagaat cagagagggg gaataagtac ggattggtaa      4260
     tacaagatga tctcacaaga tatttgatag ttacaccaat agcaaatcaa gaagcaacaa      4320
     ctgtagctaa agcatttgtg gaacatgtca tctgtcttgt tggcgctcct gtggaactcg      4380
     ttactgatca gggaacaaac ttcatgagtg cgattatgaa ggaagcttgt aaattattaa      4440
     aaattaaaaa aatcaacacg tcagcatacc atccgcaagg taacatagtc gaaagagcta      4500
     acagggagct taagatatac ttaagacagt tcgtcggtaa aaactataag gtgtgggacg      4560
     aagttttacc atatttttcc ctacaataca atacatgtat taattcgtcg actggttata      4620
     ctccctatga attagttttt ggtaggaaag ctaggttacc aacttccata tacaaacaaa      4680
     ttgataggaa aaggatgtac tcggattatt ctgaagagtt aataagaaat atggcagaga      4740
     cacatttcat agcgagagaa aatttgataa agtcaaaaga gaagcgtaaa ttaatatacg      4800
     atcagaacgc aatagaatgg caacctatgt ggggagagat ggtactcgtc agaaataacc      4860
     aaataggagt agggcaaaag ttgcaagggc tgtggagagg accatacgaa gtggttgaaa      4920
     taccgagcga ccaaacatgt atagtaagga atgggaaaaa attagagaaa gtacacaaca      4980
     acagattaaa aaaatttaat tcataaaatg aaaatgggaa aacaaaaaga gtagaaatag      5040
     gataaggaag attcttatat tcagattagg atttagaaac attagaatta gtagtttagg      5100
     gatttgaaat caaggaaaac ataaattgta ggatagtctt ggtagaaaaa gcttagttac      5160
     caaaaaaaaa aaaaaaaaaa aaaaagtaga agtagaagta ggatagacaa gggtcatagg      5220
     ttagattagg atttagatac agaatacggg gtttgaattt taggaaatta ttatttagct      5280
     gcaggataga gccaagatat agttagttta gatttcattt atagctttaa gtgattatgt      5340
     acatttaaga aataaggatt attaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5400
     aaaaaaaaaa aaaaaaaaaa aaaaagatta tccctaacta gttccctaag caacagtagc      5460
     atatagccac aaatatccac acggcatatc cacacaagca cgtatcgatg gaagcagcat      5520
     taaacagaca caggcacaaa cgagatatcg agttgaagaa aaaaaaaaaa cgtagcacac      5580
     accactagca caggaaacaa acgctatacg ggttgagctg gtgaggttga gctaagacgg      5640
     ttgaatgatg gttgaatgat aactttgctc ccccagttcc cagtccaaga aggcagctta      5700
     tagtcagaat tatgcaccta aaatatagaa ggccaatgaa ttattaagtc acgcggacgg      5760
     actttacacg tatgttacgt tgttcgcacg tgaacgcagc agcaaaaaga gcgatgaaaa      5820
     cgacagccca gcacaaggag cgttctgacg gaagtccctt ctgacggcct agatctatca      5880
     taagacacat atagatcacg agataacgat aagaaattgc ttgcaaaaca aatcgtacta      5940
     tatagttttc ttgcaaaaca attttcgtta aaaaaaaaaa gtaaaaggac a               5991
//
ID   Gypsy-29_AnMe-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-288
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6866-6866 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 288 BP; 86 A; 39 C; 91 G; 72 T; 0 other;
     tgcagcgacc ttggtcgcta cgattcgcgt aacgtgtaaa tgcgactcgg gtgctgataa        60
     tgaagtgaga gcgatcggca cagatcgatt ggagagagag atcgtgaacg gcgaagagag       120
     atcggagaat ggagacagaa gcgatggcgg agagaagcgg gacttcggtg acggcttgcg       180
     tgtagttcgg gtgtgtttag agtggcggtt aaattaatgt agcgggaaat aaaagttaat       240
     aaataaagtt agttataatc tctaaaatat taatctttag ttgtttca                    288
//
ID   Gypsy-29_CQ-I repbase;    DNA;    INV; 4879 BP.
XX
AC   AAWU01023199;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_CQ_;
KW   Gypsy-29_CQ-LTR; Gypsy-29_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4879
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 437-437 (2011).
XX
DR   Genome; AAWU01023199; Positions   43017   38139.
XX
CC   Positions [2262-2795] - Reverse transcriptase
CC   Positions [3891-4352] - Integrase core
CC   'GTTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           861..4856
FT                 /product="Gypsy-29_CQ-I_1p"
FT                 /translation="MDKFDIPPFKFKQMPPNEVREEWTRYKRNFEYMALAN
FT                 AVTNKTRLKHIFLARAGVDVQDVFSSIPDADVEERLGVDPFRIAINKLDEY
FT                 FAPKQHEAYQRFLFWSQKMKDGESLDKFMLRAMDLASKCNFGNTQQEARDI
FT                 SVIDKVIQMAPDDLREKLLQKEHLSVDSVTKTVNAYQSVKFQAGQMAGHSN
FT                 QPKPFQEVNVVNNDAAGAVGECSRCGYPGHFHYDERCPARDRTCKVCGNVG
FT                 HFGIKCRSRKARKRKFNGPTGQRKRVKIERVRAVDTEEEGKSTDFIFTIGD
FT                 GDELIWVTLGGIVVQMLIDSGCEKNIVDSGTWDKLKNQGVSVSDMRTDSRV
FT                 NFRAYGHTDPLKVSRVFEASIAVGDNGERAKTMATFYVVEGGQQPLLGRAT
FT                 AKVLGVLVLGLPSTRPPELYQMSCEQKRPFPKIKGVKVVIPIDPTVSPVAQ
FT                 HVRRPPLALLDKIECKIDSLLASDIIEPVEEYSPWVSPLVAVLKDNGEIRL
FT                 CVDMRRANLAIKRESHLMPTFEDFLPRLKEARVFSRLDIKDAFHQLELDES
FT                 CRQITTFISHKGMFRYKRLMFGLSNASEVFQKIVEQMLAGCPNALNYIDDI
FT                 LVYGKNEEEHDAALAKVMDKLKAKNVLLNHKKCVFRVSEVVFLGHHISGTG
FT                 IRPAEEKLSALKSFRAPQTVEELRSFLGLVTYVGRFLPDLATATVALRKLT
FT                 HAGEKFRWEQEHENAFQKVKRLICDLKTLRYFDNKLRTRVIADASPVGLGA
FT                 VLVQFTDYRNDSEVRVIGYASKSLSPTEKRYCQTEKEALALVWAVERFSVY
FT                 LLGRHFELETDHKPLEIIFSPSSSPCPRIERWVLRLQAYRFAVKYRKGSSN
FT                 IADPFSRLCTLDEGVDFDSDSKFLVLAIAESAAIDTNELEKASQGDGELAA
FT                 VRECVRSGVWNQPDAKPYERFQGELGVLGESLLVRGSKLVVPRALRPRMLD
FT                 LGHEGHPGETVMKRRLRDRVWWPNMDGDIVKHVTGCEGCRLIGLPSKPEPM
FT                 CRRELPTKPWVDVAIDFLGPLPSGEYLLVIVDYYSRYKEIEVMKHITAEET
FT                 TKRLHRIFTRLGFPVTITLDNGRQFVSTHFDHYCKQHGISLNYSTPYWPQE
FT                 NGLVERQNRSLIKRLQISHALGRDWKEDLAGYLLMYYTTPHSTTGKTPTEL
FT                 CYGRTIRSKIPSLIDVESTPNDEDFRERDRLLKQKGKELEDKKRHARPSDL
FT                 QPGDTVLMKNVLPGNKLTTAYSPKEHVVLSKEGGRVTVQDKESRKVYKRNV
FT                 THLKRVPVEAPSESSVAGSVEAPQEDPVPPVELRPSPVAEEAQADNHFRNR
FT                 REVKRPTRFRDYIVSHLVDD"
XX
SQ   Sequence 4879 BP; 1363 A; 1129 C; 1375 G; 1012 T; 0 other;
     aattggcgac tgtggatggg ttgcggaata catcacgcga ttggtaagat tttgttcttt        60
     atcgttgaat gttttttctt ccagcgtcaa attatgcggg gcggagcccc tccgtatgct       120
     ttgacctgtt acacacacac acacagtgat gccaaacggg tccggcaccg gaaggagtgg       180
     tcgaagagag tgaaaactca cacgccgtgg cttcgagcca ggaaaattgg tcaaaggcct       240
     tgggccggcg acgagacttc gagtcagaaa cgaaaagact ggactcggaa tcgagtagag       300
     gcttcgagcc aggttacaac aaaggccctg agccagatgt tggaaaggcc tagagccagg       360
     gaaagttggt taaatccaca aaaaaaaaaa gaagaagaaa gaaattgagc tgagttgtca       420
     aaacaacagg ccacccaggc tgacagacat ttctctgtga cagcattcgg aaaagtctgc       480
     gattaaaagt tctatcgaca acttggcaac ccagccaact gtcaagctga aaacagacaa       540
     cgaaacgaga accagatgta aacattgtgt aatcgaaaca attttgtgtt gttacagata       600
     atacgtgatt tcgagttacc agatggctta ctgaaacaag ggtttcgggt aaaatcagac       660
     tgaccggtaa gaaaaacaac atttgagttg tgtaaactgt aaatacatga gtaaatgaca       720
     ttgtaggacg aaagcagaaa aagcgaagtc aactgagtgc gctgtcaact agtggagcga       780
     tatcgattag cccaggtaat ttttacagtc tgacgaatgc atgagaaaaa gctgagaaag       840
     ttgtgatttc agcaagcacc atggacaagt ttgacatccc gccgtttaag ttcaaacaaa       900
     tgccgccaaa tgaagtgcgc gaggagtgga ctcgctacaa acgaaacttc gagtacatgg       960
     ctctggcgaa cgcagtgacg aataagacca ggctgaagca tatcttcctc gcccgagctg      1020
     gagtcgacgt ccaagacgtg ttcagcagca ttccagacgc tgacgtcgaa gagcgcctgg      1080
     gcgtcgaccc gttcagaatc gctatcaaca agctggacga gtacttcgca cctaagcaac      1140
     acgaagccta ccagagattc ttgttctggt cacagaaaat gaaggacgga gaatcactgg      1200
     acaagtttat gctgcgcgct atggacttgg cttcgaagtg taacttcggg aatacccaac      1260
     aggaagcacg agacataagc gtaatcgaca aagttatcca aatggcccct gacgacctgc      1320
     gcgaaaagct tctgcagaag gagcacctga gcgttgattc ggtgaccaag accgttaacg      1380
     cttatcagtc cgtcaaattc caagcgggac agatggcagg tcactcgaac cagcccaaac      1440
     catttcaaga ggtgaacgtg gtgaacaatg acgcggccgg cgcggtcggc gaatgctcgc      1500
     ggtgcggcta tccaggtcat tttcactacg atgaaagatg tccggcgcgg gaccggacct      1560
     gcaaggtctg cggaaatgtt ggccatttcg gaatcaaatg ccgttcgaga aaagctcgaa      1620
     agcgcaagtt caatggacca actggacaac ggaagcgagt aaaaatcgag cgggtgcgag      1680
     cggtggacac cgaggaagaa ggtaaaagca ctgattttat tttcacgatc ggtgatggtg      1740
     atgagctcat ctgggtgaca cttggaggca tcgttgtaca aatgctgatc gactcgggct      1800
     gcgagaaaaa cattgttgac agcggaacgt gggacaagtt gaaaaaccaa ggagtttcag      1860
     tatcggacat gcgcacggac tcccgagtaa acttccgggc atacggacac acggatcccc      1920
     tcaaggtcag ccgggtattc gaggcatcca tcgcggtggg ggacaacggt gaacgtgcca      1980
     agacgatggc aactttctac gtggtggagg gcggtcaaca acctttattg ggccgcgcca      2040
     cagcgaaagt gttgggtgtg ctggtgttgg gattacctag cactcgtccc ccggagctgt      2100
     accagatgag ctgcgagcaa aagcggccgt ttccaaaaat aaaaggcgtc aaggtagtca      2160
     taccaattga cccgacggta tcacccgtcg cgcaacatgt ccgacgccca cccctggcgt      2220
     tgcttgataa aattgaatgt aagattgatt ctttgctggc ctcggacatt attgaacctg      2280
     ttgaagagta cagtccgtgg gtgtcgccgc tggttgccgt gctgaaggac aacggagaga      2340
     ttcgactctg cgtagacatg cgaagagcta atctcgcaat caagcgcgag tcgcatctga      2400
     tgcccacatt cgaagatttt cttccaaggc tgaaggaagc acgcgtgttc agccgtttgg      2460
     acatcaaaga tgccttccat cagctggagc tggacgagtc atgccgtcaa attacgacgt      2520
     tcatctctca caaggggatg ttccgataca aacggttgat gttcggactt tcgaatgcat      2580
     ctgaggtttt ccaaaagatc gtggaacaga tgttggcagg atgtccgaat gccttgaact      2640
     acattgacga cattttggtc tacggcaaga atgaggagga acacgacgcg gcgttggcga      2700
     aggtgatgga caaactgaag gcgaaaaatg tgctgctcaa ccacaagaag tgcgttttca      2760
     gggtatccga ggttgtgttc ttgggtcacc acatttcagg aacgggtatt cggccagcag      2820
     aggagaaatt aagcgcgttg aaatcgtttc gagccccgca gaccgtcgaa gagctccgga      2880
     gttttctggg cctcgttacg tacgttggcc gtttccttcc ggatctggcc acagctacgg      2940
     ttgctttaag aaagctcacg cacgccgggg agaagttccg ctgggagcag gaacacgaaa      3000
     atgccttcca gaaggtgaag cggttgattt gtgatctgaa gacgctgcga tactttgaca      3060
     acaagctacg aacccgtgtg atcgctgacg catctcccgt gggactggga gcagtacttg      3120
     ttcaattcac ggactacaga aatgactcgg aggtgcgggt gatcggttac gctagtaaaa      3180
     gcctcagtcc aaccgaaaag aggtactgcc aaacggagaa agaagccctc gcattagtgt      3240
     gggcagttga gcgtttttcg gtgtacttgc ttggacgtca tttcgaacta gaaacggatc      3300
     acaagccgct ggagattatt ttctctccca gttcgagtcc gtgccctaga atcgagcgtt      3360
     gggtcctgag actgcaagca taccggtttg cagttaagta tcggaagggc agcagtaaca      3420
     tcgcagatcc gttctcgagg ctgtgcacgc tggatgaagg cgtggacttc gacagcgaca      3480
     gtaagtttct ggtgttggca atcgctgagt cagcagctat cgatacgaac gaactggaga      3540
     aagcctcaca gggagatgga gagctggcag cagtccgcga gtgcgtccgt agcggcgtat      3600
     ggaaccaacc tgatgctaag ccgtacgaga gattccaggg ggagctcggc gtgctgggag      3660
     aatcactgct ggttcgaggg tcaaagctag ttgttccgcg ggcgttgcga ccgaggatgc      3720
     tcgacctcgg acatgaaggt catccgggag agacagtcat gaagcgtcgg ctaagagata      3780
     gggtgtggtg gcctaacatg gacggtgaca tcgttaaaca cgtaacaggt tgcgagggat      3840
     gcagactgat cggcctgccg agtaagcccg aaccgatgtg ccgcagggag cttccgacga      3900
     aaccatgggt ggacgtcgca atcgacttcc tgggtccgtt gccgtctgga gaatacctgc      3960
     tagtgatcgt ggattattac agccggtata aggagatcga ggtaatgaag cacataaccg      4020
     ctgaggaaac tacgaaacgg ctgcacagga tattcactcg tctgggtttt ccggtcacta      4080
     tcactctgga caatggcaga caatttgtga gcacacattt cgatcattac tgcaagcaac      4140
     atggaatatc actgaactac tcaactcctt actggccaca agagaacggc ctcgtcgagc      4200
     gccagaatcg atccctgatc aagcgactgc agatcagcca cgcgttggga cgcgactgga      4260
     aagaggattt ggcgggctat ttgttgatgt actacacgac tccacactca acaacgggga      4320
     agacgccgac tgagctgtgc tacggcagaa ccatcagatc gaaaattccc agcttgatcg      4380
     acgtggagtc gactcctaat gacgaggact tccgggaaag ggaccgtttg ctgaaacaaa      4440
     aagggaaaga attggaggac aagaaacgcc acgccagacc atctgatcta caaccgggag      4500
     acacagtcct aatgaaaaat gtacttccgg gcaacaagct gacaacggcc tacagtccaa      4560
     aggaacatgt cgttttgagc aaggagggcg gtcgcgtcac cgtgcaagac aaggagtcac      4620
     ggaaggtata caaacggaac gtcacacatt tgaagcgagt gccagtcgag gcaccgagcg      4680
     aatcttcggt ggcgggaagt gtggaagcgc cccaggaaga tccagtgccc ccagtcgaac      4740
     tcagaccatc accggtagcg gaggaagctc aagcagataa tcatttcagg aaccgacgcg      4800
     aagtgaaacg accaactaga ttcagggact acattgtttc tcacctagtt gacgattaga      4860
     gtctagaaag aaaaggaga                                                   4879
//
ID   Gypsy-29_CQ-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   AAWU01023199;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_CQ_;
KW   Gypsy-29_CQ-I; Gypsy-29_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 438-438 (2011).
XX
DR   Genome; AAWU01023199; Positions   38138   37952.
XX
SQ   Sequence 187 BP; 61 A; 35 C; 56 G; 35 T; 0 other;
     tgtggtgcat tggcaccaag atcaacaaac acacctatac catataatct tggtaagcca        60
     acgtagcggg gggagataaa ccattgtagc ggtggatagg cagacgtgta cggaaagcga       120
     gagaaggcag acgcgcggcg gagaaccgtc gtggattaaa gttggaataa agagtttagc       180
     tatcaca                                                                 187
//
ID   Gypsy-29_DAn-I repbase;    DNA;    INV; 6337 BP.
XX
AC   AAPP01014773;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DAn_;
KW   Gypsy-29_DAn-LTR; Gypsy-29_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6337
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01014773; Positions    7585    1249.
XX
CC   Positions [4067-4546] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           390..1781
FT                 /product="Gypsy-29_DAn-I_2p"
FT                 /translation="MSFQGPYRENRRAFESDSEEEIIRESQRYRAQAKADL
FT                 HTMNAAQIEALVQAALANQEQRLRAEFASQISAVNQQLQNMRVEVPEVESY
FT                 QRVASVPGAAQCDIPLDIVKSIPDFTGIQDDYVAWRQSASDAYELFEPYPG
FT                 SSAHYQAVTIIRNKIKGPARALLVSHNTVLNFKAILARLDCSYADKTSLRL
FT                 LRQGLESVRQGEKSLMQYYDEVERKLTLVTNKIVMTHDDERASLLNTEVRA
FT                 DALHVFISGLKKSLRAVVFPAQPKDLPAALALAREAEASIERSVFAATYAK
FT                 AVEQRNQNTDPHKCHNRAFEKQGKNSGADGGSEKNPHFFKKANKNQNNSPW
FT                 RKQDNWGDREIAAEPMDVDPSSSKFRHPTNFRQGNNTQVQNSQTQKRPISS
FT                 ERMTGQRRQRVNNIGQTANAEETHDYDSAAEAALNAIDDDSDTFDANDLIN
FT                 FLEEGPAYLSSSEGWRGEL"
FT   CDS           1781..4678
FT                 /product="Gypsy-29_DAn-I_1p"
FT                 /translation="MKILIDTGAAKNYVRPLKELKNIMLVDSPFTVSSIHG
FT                 SSKVKEKCLMHIFGLKAPFFLLDSKNTFDAIIGFDLLTQAGAALDLCNSVI
FT                 RYGNVSEQIKYYECDNVNFTNIDDLVVPNLVKAEFKKMIIKRKQVFSHSNE
FT                 ALPFNTAIIAAIRTETSEPVYSKLYPYPMGAADFVNTEIKQLLKDGIIRPS
FT                 RSPFNSPTWVVDKKGLDNDGNKKKRLVIDFRKLNERTIADRYPMPSIPMIL
FT                 ANLGKAKFFTTLDLKSGYHQIYLAEKDREKTAFSINGGKYEFCLFQRAIDD
FT                 VLREQIGKICYVYVDDVIIFSENAVDHVVHIDTVLRCLCEANMRVAPEKTK
FT                 FFKETVEFLGFIVTPNGTKTDPEKVKTLQEYTEPKNLFSLRSFLGLASYYR
FT                 NFVKDFAAIARPLTSILKGENGTVSKHMSKKVSIQFDEIQRKAFKRLRDIL
FT                 SSEDVILAYPDFKLPFDLTTDASASGIGAVLSQNGRPITMISRTLKDCELN
FT                 YATNERELLAIVWASGKLQNYLYGAKEIRIFTDHQPLTFAISERNTNSKIK
FT                 RWKAFIEEHGAKVFYKPGKENFVADALSRQHINAMQNEPQSDAATIHSELS
FT                 LTYTVESTDKPLNCYRNQIILEEAKQPLRRHFIVFGTKNRHIIHFDNRDSL
FT                 FELVKEAVNVDLVNAIYCDLPTLACIQHALIAEFPATKFWHCKKFVGDITN
FT                 ADEQKEIITCEHNRAHRAAQENVKQVLQDYYFPNMAKLANEVVINCKTCTK
FT                 AKYNRHPKKQELGVTPIPSYAGERLHIDIYSTDKKLFLTCVDKFSKFAVVQ
FT                 PLLSRAIVDVRSPILQLVNFFPNIKVIYCDNEASFNSETITSLLKNQYDID
FT                 VVNAPPSHSSSNGQVERFHSTLTEIARCIKIDKKIDDTIELIMRATVEYNK
FT                 TLHSVTKLQPKYALHLANDDQKLTIQNNIEKAQQTNLDRCNPTRQNRIFEV
FT                 GEKVYLKITKG"
FT   CDS           4785..6335
FT                 /product="Gypsy-29_DAn-I_3p"
FT                 /translation="MPLSSFFLIFHTQYTLRHLTHSRSNLSPSYRTAEIML
FT                 ITLTIVNARVTDYSHAQYIPITDGVALVWEQRNLLRHSSNLSEFALMIEET
FT                 SRLSDFFPESHMRKLLDVDTDHLRSLLSVLKVHHRIARSLDFLGTALKIIA
FT                 GTPDAADLEMLKISDSRLIESNNRQVIINTKTQNKINELTEAVNKIIRAKQ
FT                 NNMVDTPHLFEILLARNRILITEIQNLMLTVTLAKANIINPAIFNHNDLKS
FT                 ILIDHPTEVPIISLIEASSIKIFQSDSMIHMIIAYPSIKNTCKKVTIFPVS
FT                 HQHTILQLNENIVAECNNDVLAVTDCIPTTYASFCKLATHDSCARGLHAGG
FT                 TALCETQASHLSPITLVDEGVIIINECPAKVSTDNGPEIVTNGTHLVTFER
FT                 VAYINGTKYSNIREAIRKTPGMAASPLLNIIGHNPMLSMPFLQRINNQNLE
FT                 EIQGLKEEVKSAGSTDIWFAVGVAASIFISCSILLMMNLKRKRDAQEIQQV
FT                 VDKFQMTEDGHSLKGRVVNTI"
XX
SQ   Sequence 6337 BP; 2138 A; 1414 C; 1279 G; 1506 T; 0 other;
     tcttaaatat aattggcgct caacaacaac aagaacccac ggctcaaaaa atgtaagtgg        60
     gctgaacaag caatatacaa cttcaataca tattgtcaaa aaaaaaataa ataaaaattc       120
     gtacacaaaa aattttttac aaaaaaataa ataaaatata attgtaaata attataatca       180
     ttcaaaatca taaacaaagt gtgactgtaa tttgaaaaaa acaaaaagat gtttttaaat       240
     aaaaataaac ctctctgagt aattttgcag gagtaaagct cccatttgtt aattgttaat       300
     ctaatctgtt aatctaaaca attttctgtc gaattaaaat attcggcttc aaagtaactg       360
     gtgtcttgtg ttagcaagtt agtggcccca tgagttttca gggcccatac agggaaaata       420
     gacgtgcatt tgaaagtgat agtgaagaag aaataattcg agagtcccaa agatataggg       480
     cacaagcaaa ggcagactta cacaccatga acgcggctca aatagaagcg ttagttcagg       540
     ccgcattggc caatcaggaa cagagactta gggccgaatt tgcgagtcaa atcagtgccg       600
     ttaatcaaca gttacaaaat atgcgtgtag aagtgccaga ggtagaatcc tatcagaggg       660
     tggcctcagt accgggagcg gcacagtgcg acataccatt agatatagtt aaatcaattc       720
     cagacttcac cggtatacag gacgattatg tggcttggag gcagtccgcc tccgatgcct       780
     atgaattatt cgaaccctat ccaggcagta gcgcgcatta ccaagccgtc actattatta       840
     gaaacaaaat taaaggccca gcgcgcgcgt tgctagtttc acacaacaca gtgcttaatt       900
     ttaaagccat tttggctaga ttagactgct cctacgcaga taaaacgtcc ttgcgcctac       960
     tgcggcaggg acttgagtcg gtccgtcagg gtgaaaaatc cctaatgcag tactacgatg      1020
     aggtcgagcg aaaattgacc ctcgtgacca acaaaattgt aatgacgcat gacgatgaaa      1080
     gagcctcgct gctcaataca gaagttaggg ctgatgccct acacgtattc atctcagggc      1140
     taaaaaaatc gctcagggcc gttgtttttc cagcacagcc caaagacctg ccagcagcat      1200
     tggcattagc tagagaggca gaggccagca ttgaacgaag tgtgttcgcg gccacatatg      1260
     ccaaggcagt cgagcaaaga aatcagaata ctgaccctca caagtgccat aaccgcgcgt      1320
     ttgagaaaca aggaaaaaac tctggtgccg acggaggctc agaaaaaaat cctcattttt      1380
     tcaaaaaggc aaacaagaat caaaataata gtccctggcg taaacaagac aactgggggg      1440
     atcgagagat cgccgcagaa ccaatggacg tagacccatc atcctctaag tttagacacc      1500
     ctacgaattt caggcaggga aataatactc aggtccaaaa ttcgcagacc cagaagagac      1560
     ccatctcttc agagagaatg accggccaaa ggcgccagcg agtaaataat atcgggcaaa      1620
     ccgccaatgc ggaggaaacc cacgattacg acagcgcggc tgaagccgca ctgaatgcaa      1680
     ttgacgacga cagtgacaca ttcgacgcca acgaccttat caatttttta gaggaaggtc      1740
     ccgcttacct ttcatcgagc gaaggctggc ggggagaact atgaaaattc tcatagacac      1800
     tggagcggca aaaaattatg taaggcccct aaaggagctg aagaatataa tgcttgtcga      1860
     ctccccattt actgtgagtt ccatccatgg ctccagtaag gtaaaagaaa agtgcttaat      1920
     gcacatattc ggcctaaagg ctccattttt tttacttgat tctaaaaata cgtttgatgc      1980
     cataataggt ttcgacttac taacgcaggc cggagcggca ttagatctat gcaatagcgt      2040
     aatcagatat ggaaacgtat ctgaacagat caaatactac gagtgcgata atgtgaactt      2100
     cacaaatatc gacgacttag ttgttccaaa tttagtgaaa gctgaattta aaaaaatgat      2160
     cattaagagg aaacaagtgt tttcgcactc taacgaggcg ctaccattta acacagcgat      2220
     cattgctgca attcgtacgg agactagtga acccgtatat tccaagctat atccttatcc      2280
     aatgggagca gcggattttg ttaacacaga aatcaaacag ctgttaaagg atggcattat      2340
     ccgaccgtct aggtcgccat ttaacagccc gacatgggtt gttgacaaaa aagggctcga      2400
     taacgatggc aacaaaaaaa aacgattggt gatcgacttc aggaaactga atgaacgaac      2460
     catcgccgat cgttatccca tgccaagtat tcctatgatt ttagcgaacc taggaaaggc      2520
     aaaatttttc actaccctag acctaaaatc agggtaccac caaatctatc ttgccgaaaa      2580
     agaccgcgaa aaaactgctt tctccataaa tggaggaaag tatgaatttt gccttttcca      2640
     aagggcgatt gacgacgtac tccgcgaaca aattgggaaa atatgttacg tctatgtgga      2700
     cgacgtgata attttctccg aaaatgctgt tgaccacgtt gtacacatcg acacagtcct      2760
     gagatgcctg tgcgaagcca acatgagagt ggcaccagaa aaaaccaaat tcttcaagga      2820
     aactgtcgaa tttttagggt tcattgtcac tcccaatgga accaaaacag accctgaaaa      2880
     agtaaaaaca ttacaagagt acaccgaacc aaagaatttg tttagcctcc gatccttttt      2940
     aggattagca agttactaca gaaattttgt caaagacttt gctgccatag ctaggccact      3000
     cacctccata cttaagggag aaaatggcac ggttagcaaa cacatgtcaa aaaaggtttc      3060
     tatccaattt gacgagatcc aacgcaaagc gttcaagcgc ctgcgagaca tcttatcatc      3120
     agaagatgtt atactggctt acccggattt taaacttcct ttcgatctga ccaccgatgc      3180
     ctctgcaagc ggcatcggtg cggtactgtc ccaaaacggc agaccaatca caatgatatc      3240
     tcgcacatta aaagactgcg agcttaatta tgcaacaaat gaaagagaat tattagcaat      3300
     tgtttgggct tcagggaaat tacagaatta cctatatggc gcaaaggaga tccgcatttt      3360
     tacggaccac caacctctaa cgttcgctat atccgagcga aatactaatt caaaaattaa      3420
     acgttggaaa gctttcatcg aagaacacgg tgctaaagta ttttacaagc ctggcaagga      3480
     aaattttgtc gctgatgcct tgtcccgaca gcatattaat gctatgcaaa acgaacccca      3540
     atctgacgca gccactatcc acagcgagct ttcgttgacc tacacggtcg aatctaccga      3600
     caaacccttg aactgctaca ggaatcaaat aattctggaa gaagcaaaac agcctttacg      3660
     gcgacatttc atagttttcg ggacaaaaaa ccgtcacatt atccactttg acaacagaga      3720
     ctctctgttc gaactggtta aggaggcagt taatgtggat cttgttaatg ccatttactg      3780
     cgacctcccc acactagcat gtatccaaca tgcattaatt gcggaattcc cagcaaccaa      3840
     gttttggcac tgcaagaaat tcgtgggtga tatcacaaat gcagatgagc agaaagaaat      3900
     aattacatgc gaacacaacc gcgcccacag ggctgcccag gaaaatgtta aacaagtcct      3960
     ccaggactac tattttccga atatggccaa actcgctaat gaagtggtca taaactgcaa      4020
     gacttgcacc aaggctaagt acaacagaca ccccaagaag caggaattgg gagtcacacc      4080
     tatcccttca tacgcgggtg aaagactaca tatagatatc tactctacgg ataagaaatt      4140
     attcctaacc tgcgtagata aattttcaaa attcgctgta gtacagccat tactttctag      4200
     ggctatagtt gacgtacgca gccccatact gcaacttgta aacttttttc caaacattaa      4260
     agtcatatac tgcgataatg aggcgtcctt taactcggag accataacct cattattgaa      4320
     aaatcagtat gatattgacg ttgttaatgc acccccttca cacagcagct ccaacgggca      4380
     agtggagcga tttcacagta ccttaacgga gatagctagg tgcattaaaa tcgacaaaaa      4440
     aattgacgac accatcgagc tcattatgag agccacggta gagtataata aaacattaca      4500
     ctcagtgacg aagctgcaac ccaagtatgc cttgcactta gccaacgacg accaaaaact      4560
     aacaattcaa aataatatcg agaaggccca acaaactaat ctagataggt gcaaccctac      4620
     tagacaaaac cgaatttttg aggtaggaga aaaggtatac ctaaaaataa caaaaggtta      4680
     ggaaacaaac tgaccgcact gtacacggaa gagcatgtac aagcagacat gggaacgtct      4740
     gtcctcatta gagggagggt ggttcataag gacaacctta gataatgccc ctctcaagct      4800
     ttttccttat ttttcacaca cagtacactt tacgccactt aacacacagt agatctaacc      4860
     tttcgccttc ttacaggacc gcggaaatta tgttaataac tttaactata gttaacgcta      4920
     gagtaacgga ctactctcat gcccaatata tcccaatcac ggacggagtt gcactggtgt      4980
     gggaacagag aaacttgttg cgacactcaa gcaatttgtc agaatttgca ttaatgatag      5040
     aagaaactag tagattatcc gattttttcc cagagtcgca tatgcgaaaa ttgttagacg      5100
     tcgacaccga ccatttaaga agcttattgt ccgtactaaa ggtacaccat aggattgcca      5160
     ggagcctaga ctttttaggc acggcactta aaataatagc gggcaccccg gatgccgctg      5220
     accttgaaat gttaaaaata tccgactcac gactaataga atccaataac agacaggtga      5280
     ttattaatac gaaaacacag aacaaaatta atgaattaac agaggctgtt aacaaaatta      5340
     taagggcaaa acaaaataat atggttgaca ctccacactt gttcgagatc cttttggcca      5400
     gaaatagaat attaataact gaaattcaaa atttgatgct tacagtcaca ctagctaaag      5460
     ccaatattat aaatccagct atttttaatc acaatgattt gaagtctata ttgattgatc      5520
     accccacaga agtccccatt attagcttaa ttgaggcgtc tagcattaaa atatttcagt      5580
     ccgatagtat gattcacatg ataatcgcat accctagcat taaaaatact tgtaagaagg      5640
     tcacaatttt cccggtgtca caccaacaca ccatcctgca actaaatgag aacatagtag      5700
     ccgagtgcaa caacgacgtc ctagcggtca ccgattgcat accaacaact tatgcatcat      5760
     tttgcaagtt ggcgacccac gattcatgtg ctcgaggcct acacgcgggc ggcactgcac      5820
     tgtgtgaaac acaggccagc catttaagtc ccatcacact ggtggacgaa ggagtaataa      5880
     taatcaacga gtgcccagcc aaggtcagca ccgataatgg ccccgaaata gttaccaacg      5940
     gtacgcacct tgttacattc gagcgggtgg cttacatcaa tggtacaaaa tactccaaca      6000
     tacgggaagc cataagaaaa actccaggca tggcagcatc cccgctactg aacatcatcg      6060
     gccataatcc catgctgagc atgccattcc tccaaaggat taacaatcaa aacctggaag      6120
     aaatccaagg ccttaaggag gaagtgaaat cggctggttc tacagatatc tggttcgcgg      6180
     ttggcgtggc agccagtatc ttcataagct gctccattct cctcatgatg aacttgaaga      6240
     ggaaacgaga cgcgcaggaa atccagcagg tcgtcgacaa gttccagatg accgaggacg      6300
     gtcatagtct taaggggagg gtagttaaca ctattaa                               6337
//
ID   Gypsy-29_DAn-LTR repbase;    DNA;    INV; 506 BP.
XX
AC   AAPP01014773;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DAn_;
KW   Gypsy-29_DAn-LTR; Gypsy-29_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-506
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01014773; Positions    1248     743.
XX
SQ   Sequence 506 BP; 136 A; 120 C; 119 G; 131 T; 0 other;
     tgagtagaat ataagtcgat aaaaatcttg ggcgattatt gaatcaccct aatgtttata        60
     tgcagataca gcataaacgt ctttaggggc ggtggccgaa cccgactccc ggtatggtac       120
     gatatgctgt tttgctaggt cagcacttcg ctagacgagc ggtcggtttg ccggccgcgc       180
     taagttaaag tacagttaag agttttcagt tttgatttga cattctacta ataaagagcc       240
     aaagctcgta tatgcaaatt ctactccgac aacttgtcgt aaaatcttat cattggtaac       300
     tgactgagtc cctaggccag cggttaatga agggcagtca cccttccaac ctaatctccc       360
     taactcttct ttgggaaatc ttcagccagc cggccagcat ccagcggcga tcaggtcgtc       420
     catcttcgtg ggactatcca aagaatatcc aacgaatctg cgtgggacca cccgaggaga       480
     caaggggatc tgccgttaag acggca                                            506
//
ID   Gypsy-29_DEl-I repbase;    DNA;    INV; 3441 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DEl-I.
XX
NM   Gypsy-29_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3441
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 469-469 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..924
FT                 /product="Gypsy-29_DEl-I_1p"
FT                 /note="zinc fingers."
FT                 /translation="MPASTVQQTGEICLPKYNPDIAGVDATQWCATVDIIL
FT                 RTKPLSDSALILALSKALEGTAAQWLSQICYPGITWQQFRQLFEQRFESSE
FT                 TPAAVIFNLLNSRPRNGESLPVFASRSVTSLCTKLRNLNCEQISIALILGH
FT                 MANFDRRLQRMIHTTHISNRRELQAELQVFSALKERPIAPNWEPETKRAKT
FT                 ADLKCYQCGKPGHKKQDCRSGLGFQFSSTEKERRSGKSHQERPTVTCYRCQ
FT                 EPGHIATNCQKKVQNTGLGVRSEESGAVHYGGA"
XX
SQ   Sequence 3441 BP; 1091 A; 527 C; 811 G; 1009 T; 3 other;
     tcagaagtgg gattcggccc taaccaaact ttgtcaaggg atgtcttcgc gttgttggag        60
     caacaaaacc ggaattttct ggaactggtt aagaaactac agatgccggc gagcacagta       120
     caacagactg gcgagatttg cttgccgaaa tataatccgg acattgctgg ggtggatgcc       180
     acgcagtggt gcgctacggt cgacataatt ttacgaacga aaccgctaag tgacagcgct       240
     cttatattag cgctgagtaa ggccttggaa ggcacagcgg cccagtggtt gtcacaaata       300
     tgctacccag gaataacttg gcaacagttc cggcaattat ttgagcagcg tttcgagtct       360
     tcagagacgc cagccgctgt tatttttaat cttctaaata gtcgcccaag gaacggtgag       420
     agcttgcctg tttttgcgag ccgcagcgtg acgtcactgt gcacaaaatt gcgtaattta       480
     aattgtgaac aaatttccat cgctttgatt cttgggcata tggctaattt cgaccggcgt       540
     ttacaacgaa tgatacacac aacgcatatc agcaatcgac gtgagctgca agcggagctg       600
     caagtatttt ctgcactgaa ggagcgtcct attgcaccaa actgggaacc ggagactaag       660
     cgggctaaaa ctgctgatct aaaatgttat cagtgtggaa aaccaggaca taaaaagcaa       720
     gactgcagat ctggactagg atttcagttc tcgtcaactg aaaaggagcg gcgttctggg       780
     aagtctcatc aggaaaggcc aactgtaact tgttacagat gccaggagcc gggacacatt       840
     gccactaatt gtcaaaaaaa agtgcagaat accggattag gagtaagatc ggaagagagt       900
     ggagctgtgc actatggtgg agcctaaatt gagtatgctg gttaatggtg agagatttcc       960
     aataacattt gatccggaag ctaagtgttc attaattaaa gaaagtacag tactacagta      1020
     cttcgaaaat caagatttat atcattgttg gtggaaattc tttggtagtt ttgtttcaca      1080
     tagtaccaaa ttgtggaatc aaaaaaaaaa atattgtcat tggcagacaa atattggttc      1140
     aatgtttttg gtatagtttt tgttttattt tttttgcatt tgactggttg aatcaactaa      1200
     gactcttcaa aagcgaccat atagatttgg ttcaagtgag agggcgctag ttcgtggcaa      1260
     aaatagagaa ttaattgagt ataaagttat cagacctagt aaaaatagag aattaattga      1320
     gtataaagtt atcagaccaa gcccggtaaa tataaaataa atggttcagc aaaactttga      1380
     gttgattatc gkgaattaaa taaaaataca gtagctgata aaatttcatt acctctgata      1440
     tcagataaag tagctagact ttggggagca aattatttca cttctcttgt catgtctagt      1500
     ggatatcatt agattccaat gcactcggaa caattaaata ctgcttttgt tacacctgat      1560
     cggaagaatg aatttctatc gatgccattt agattaaaga ttgctttctc tgtgtttcaa      1620
     agaacggttg gaaattgtta tagaaatttt agtgaaagat gaatttttat ttaacatttc      1680
     aaaatgtttc tttctgaaaa ccaatagttc ggtacattgg ttatgaggtt aacgcggcga      1740
     aaaattaaag caacatcgag atcaatcgct acattacgac agctcatcgg tttgatgtcg      1800
     tattttcgca aatttccgag gtttttgcac aatttttgaa ccttttgtat tttctcacat      1860
     ttgaaaataa tagcttgttt tggagtgtag agcactaaga aattagcaaa agaataatca      1920
     ctgtattaac gaacaagcca gtgttgatta tttttgatcc ttagtttcca attaatgctt      1980
     ttactaagtt tgcttatttg ttttgcacct tctctattga tgcttatact tgtattaacc      2040
     cactgaaatc tacgacagtc atttaaggtg tgacaacacg tctaattgcc gatcagcggc      2100
     gaagcttgac tggttcaaag tttatgaaat tttgttctta tcaatagata gatctacatt      2160
     taattgccac aggtgtaagt cgagtcaacg gtcaagttga aagggttatg agaaccctta      2220
     agaatctatt gacggctgtt gagacaagct ctatgtcgtg gcaagaagca ctagtggagg      2280
     tacagctggc ccttgatttc gcagtgaatc gtagtacwaa atgtagtcca ttagaacttt      2340
     tgattggtgt aaatgctatg cctctggggc taatcctaga agcgatactg aaactgaaat      2400
     tgacaagata taagaaaaca aaattttacg aaagcaaggc taaggtaatt ggattcagta      2460
     tgggttactt tgtgctggaa aacagtgtga aacagcaaac gaaatcggat ccaaagttta      2520
     gaggttcttt cgttgaggca ttgaagggag acagcatgtt aaaaaaaaaa aaaaaacaaa      2580
     caaacacgaa agtttgagaa agttacagga tgtgtaaatt tcagagagcc tgatgcaaat      2640
     tttaaagaac aaagtctgtt agaaaagtct tttgaaacag aagagtgtcg tgaagccatg      2700
     tgattggcga tgatcgaagg ttgctttaga aatgtggttg atgaattcgt gaagccaagt      2760
     attgggcgat gaacgagcga tgtggttgat gaattcgtga agccaagtat tgggcgatga      2820
     acgagcgatg tggttgatga attcgtgaag ccaagtattg ggcgatgaac gagcgatgtg      2880
     gttgatgaat tcgtgaagcc aagtattggg cgatgaacga gcgatgtggt tgatgaattc      2940
     gtgaagccaa gtattgggcg atgaacgagc gatgtggttg atgaattcgt gaagccaagt      3000
     attgggcgat gaacgagcga tgtggttgat gaattcgtga agccaagtat tgggcgatgg      3060
     acgagcgatg tggttgatga attcgtgaag ccaagtattg ggcgatggac gagctgagag      3120
     cataataaaa tgcgtgagcc aatgtgtttg gcgattgatg aatattcaaa agttggctag      3180
     tataagacaa gatatgtttc atggattatg acttaatgat ttgtaatgat taatttataa      3240
     tttgataatg tttaaacgat cttttgactg gaaatgtaaa tgaaagaaat ggtttataag      3300
     aaaacgtaat gatttgaaat attctatgaa attgagatta cttggttaag tttttctgaa      3360
     gtattcaata gtattataat gttggaatga aacwaagagg tttattgtag acacgaggac      3420
     gtgtctatgt cagaatggcc g                                                3441
//
ID   Gypsy-29_DEl-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.06, Created)
DT   21-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DEl-I;
KW   Gypsy-29_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-341
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3097-3097 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 341 BP; 89 A; 59 C; 92 G; 101 T; 0 other;
     tgtcggagag tatgtagtgc agcatttcga caggtatgac catgggttgt gctggtatac        60
     tagatatact agatattagt tttggtagaa tggggactca gtttgcgagc tgaggccgag       120
     tgtggcttcg tatgcgttgc taggtctggt ctctcttttt cttctggttt gtagtgtgac       180
     gtgagataga cacgtgtttt ggtccttaag agagaattat gagcaacaaa ggcatcgaag       240
     actcgctgca tttgccagaa ttaagttcag gcaatcaaga accaaacgat caattcacca       300
     gcaatgacga cttacaaggg gatgaattta gttctccgac a                           341
//
ID   Gypsy-29_DMel-I repbase;    DNA;    INV; 4140 BP.
XX
AC   .
XX
DT   17-AUG-2018 (Rel. 25.03, Created)
DT   17-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4140
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (17-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A conceptual reconstructed element. Not a consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2620..3471,3468..3653,3657..3875)
FT                 /product="Gypsy-29_DMel-I_1p"
FT                 /translation="LHKLSKFAEYYTLKEYDKIAKINLGDARVIQSYKHLL
FT                 HKINTKNLLENTKHFETGYRLEQVRFSDEIKDGLRAKVDQLRTKINALLPK
FT                 RREKRGLVNGLGLTKVVLGNMDANDAQSIDNRFNVVKENENQITEKINKQT
FT                 IFNKEAILRFEIITKHINQEQVIINDFIKHYNNNIYKTLNDEHNEIHLLYV
FT                 LHNHINNIAESILLTKLNIIPKFILSEGIIKSINEFISNQNVTIESNEHLY
FT                 RLLALETYINDSYIIIHVKIPIFNTQMYSLTRIVPLPLNKTKLIVANYILY
FT                 DRNNEILCLEEKCPKIHRTYICEGARTHITLVNVHCLKGILHNQTTTCDVK
FT                 GVGQEIIKGIEPRHIIILNTINTNVTSSFRKPFSINGYINFQQLHGQDQQP
FT                 DLRRHSDGIRLRNETLRKVICADKN"
XX
SQ   Sequence 4140 BP; 1639 A; 761 C; 668 G; 1072 T; 0 other;
     ggcgcagtcg tattacgaac cgtgagctcc caaggacatg gacaggatga acatcgtatt        60
     aactatagtt ttgtaagtaa ataataagtc aatatagaat aagtgatgtg aaagatgttc       120
     taagaatgag aagaaagaat acaaaaaata taataataaa taataatatt gaatttctta       180
     caaatgggat aatgctctgt ataaaatata acaaatataa catggtacaa attcctaaca       240
     aataaatgca aaatgcaggc aaaatgaaaa catacaaaaa aaagaaagaa acaatatgta       300
     cagttcatgc caacttagcg tcaggccata cgaccacatg tcgctgagag cttgttgtta       360
     ccgaacaaca ggtttgatgt ggtcttctgg cctttacaac gtgttcggtg tagcatacga       420
     acagggatga cgccaacggt tggcacacaa ccactatagc agtcgcatcg acatgctgga       480
     cgcgaaatgg tttgctgttt gaagtcaagc gacgtttcga cacgcaacac aaatcggttc       540
     gaagtggtca ctgaagcata cgatggggtt gttctgacgg ttgtctcaac cagtttgtgc       600
     gaacatgtat aattaccagc tacgtcacgc tgtacaacat ggtacagtgg ttcgagaggc       660
     aataaggcaa aaaaaaaatt taaaaaaaac taatgaaagt taaataaaac aggaaaagaa       720
     attatatttt attacaaaaa aaaaaaaaaa acaaggaata tgaaatttaa aaaaaaatat       780
     atatatatat ctttggaata taaaacaagt gacaactgac aaacgtgaat cacatataac       840
     gacgcgaaat agttcattgt ggaataggtc actgaagcta gtcaaactat gcgttgacgc       900
     tctggacgcc acggagctgt ttcgaatagg tcactgaagc gtaatcggat caagattcaa       960
     accctaaaaa tttaaactaa acaaatacca acaacaaata tacagatagc acattaactt      1020
     acacaaagca aggaaagaag tcaaaactat actacggcga ccgtgacagg actcgaacct      1080
     gcaatcttcg gatcagcatg cctggcagaa cataataata acaataataa taataattat      1140
     gataataata ttaataataa ttataatatg aataagtaaa cttaggacta atcctaaatt      1200
     tttaattttt aaataatata atatttcttt ggtgtgctgt aagatacagt tctgtaacag      1260
     cgttaaattt aaaaatttaa aatttaaaaa ttttaattta aaaaatttaa aaaaaattgt      1320
     tttttagtat tttattaaaa actaaatttt tgtcaactaa gaccgttttg ttccattaga      1380
     cagttgctgt tagtaaaaat atttttcttt tgtcatcaat ttctactatc gggaaagtta      1440
     aaaaaatttt cccatgcact aggagcaagc tccgatctag caccagcctt acggatatta      1500
     gggaagaaac cgaagaacat caactccaaa taggtttacc ctctccatcg tcattgaact      1560
     cgacacaaag ctccgcatca tccaaccaag ccgtggtacc aacaaaccag gcagacttgt      1620
     attcggctct taaaattccg gaccctatcc gctttctacc gccttatgat ggcaacccta      1680
     aaaaccttag cgatttcatt aacaatgtgg aagaaattct tatagatatc agagaaacag      1740
     ataaaacaac ttatggacgt agtctcttaa ggtcaattag acacaagatc gtagataagg      1800
     ctgatgatgc gattcatgca gctggagccg gtcttaattg ggacgaaatt taagacgcac      1860
     taattttatt ctgttctgac aaacgagacg aacaaaccct tatgtccgag ctacatggct      1920
     tagctcactc tcaactttca atacaaaccc tgtttaaaaa aatttgcgaa attaaatctg      1980
     ttttcttcaa attaatagat accatggaac tcgaaccaat attaattaga tcaaagaagg      2040
     aatttttaca gacacttgtt taaatattta cttaacgggc attagaggtc cacttggccc      2100
     agcagtaagg tctatgagac ctacaaatct tcaatgggtc atgaaagaaa gggacattta      2160
     ctactaggaa aataaaagga aacaagaaac taggcagatc gactacagaa gacaatcgga      2220
     ctctcggggt ggatacccaa gaacatatca gaattatcaa agatctagtt acgaaacaag      2280
     ggattacgga agtaagaggg actatagaca atacccctcg aacgtgagag acaattctcc      2340
     acgtagaaag aataacgtac cggcaagaat gcctaaagac catcaaacta atcgtttcta      2400
     tgaacaaaga aaattcgaaa attcaaactc ctacaataag aaggagatac agtgtttgga      2460
     aaagaaaata gaagaaacaa actgacaccc cgattcacca aacatacagt taaggggaag      2520
     ataaagccta acctttatat cacacaaaaa ccaaaaaatt cacaaatcaa aaattaagaa      2580
     aagaacaaaa tagtaatctt tacagacttc gctgcgtaac tgcacaagtt atcaaaattc      2640
     gctgaatact atacgctgaa ggagtatgac aaaatcgcaa aaataaatct gggagatgct      2700
     agggtcatcc aatcatataa acatttactt cataagatta atacaaaaaa ccttcttgaa      2760
     aacactaaac attttgaaac aggctatcgc ctagagcaag taagattttc agacgaaatt      2820
     aaagatggtt taagagctaa agtagaccag ttaagaacca agataaatgc cttattacct      2880
     aaaagaagag aaaagagagg attagtaaac ggtctcggtc ttacaaaagt tgtacttgga      2940
     aatatggacg caaatgacgc ccaatctatt gataataggt ttaacgttgt taaggaaaac      3000
     gaaaaccaaa taacagaaaa aattaacaag caaacaatat ttaacaaaga agctatccta      3060
     agatttgaaa tcataacaaa acacattaat caagaacaag taataattaa cgattttatt      3120
     aagcactata ataacaatat atacaaaaca ctaaatgatg agcataatga aatacaccta      3180
     ctatatgttt tacacaacca cataaacaac atagcagaaa gtattttgct aactaaatta      3240
     aatattattc ccaaatttat attatcagaa ggaataatta aatctataaa tgaatttata      3300
     tcaaatcaaa atgttacaat agaatctaat gaacacctat atagattgtt agctttagaa      3360
     acttatatta acgactccta cataattatt catgttaaga tacctatatt taacacacaa      3420
     atgtattcac ttacacgcat tgttccttta ccattgaaca aaactaaatt gtagccaatt      3480
     acatcctata cgatcgaaac aacgaaattc tgtgtcttga ggaaaaatgt ccaaaaatac      3540
     acaggacata tatatgtgag ggtgctagaa cccatataac actggtaaac gtccactgtc      3600
     tcaaaggtat ccttcataac caaacaacaa catgcgatgt aaaaggcgta ggttaacaag      3660
     aaatcataaa aggaattgaa ccacgccaca tcattatctt aaacactatt aacaccaatg      3720
     tcacatcgtc gttcagaaaa cccttctcta tcaatggcta tattaacttt caacaactgc      3780
     acggtcaaga tcaacagcct gacttacgac gacacagcga tggaattcga cttagaaacg      3840
     aaactctccg taaagtcatt tgtgcagata aaaattaaca acactttcga agatattaac      3900
     ctgcacaaac ttcatctaca gaccctagca agtcaagacg acatcattgt aattaagacg      3960
     tcaaccacga accacctctt tacgatctac atactgtctg cattttcgat catatgcata      4020
     gtacttatca tgatgtttac aagaagaagc accaccatta tcaccccggt ggaacttccc      4080
     ttaaattacg ttccggccat tccatctatg tggccgtcac ttcattccag gaggggagga      4140
//
ID   Gypsy-29_DMel-LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-424
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 730-730 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 424 BP; 131 A; 86 C; 89 G; 118 T; 0 other;
     agttaccgat accgcattac agagtatatg cgattcggta ccaccagcca agccgccgag        60
     acacagttca ttgctcactt gagcaatgga atgtattaca atgttgcaag tgccgacaca       120
     gcacttcgac aggacgtcca ttgcgacagt tcttataaac agaaatgaga actgccgcac       180
     tagcgttttc ttgggtacat gtttagacac agacacgaaa tcttgtatac atttttaact       240
     tagctttagt tttgaaaata aagtaagatt cagttccagt ttggacacaa gcaaataacg       300
     ttggtcttct aatttatttg ggaaattggg aatgaacatt gtttcaacta cgtgggaagt       360
     tggcacctga aaactacctg gaaatccacc taagtgcaga ttggcatctg gagaacctgt       420
     aatt                                                                    424
//
ID   Gypsy-29_DWil-I repbase;    DNA;    INV; 5725 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DWil_;
KW   Gypsy-29_DWil-LTR; Gypsy-29_DWil-I.
XX
NM   Gypsy-29_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5725
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..1196
FT                 /product="Gypsy-29_DWil-I_1p"
FT                 /translation="MEAEMDNLRAALLQQEGELNLLRQQNQQQQQQLQQQQ
FT                 QQQQQQPFQWLSNKDIIQQFRQLRQLDDQHDVLAFIKSVEFLMTLCQGNAL
FT                 LIQFGTSIVANEKVSGTAANFIRQLGMEPSWDQMKTKLMEQMRPRMTYEDV
FT                 FDRCRFIKVSSLRDLFQEFEKAKCEINKIYMFDESKPAMYENDKVDRDLLN
FT                 MLMNKIDTPFRIHVDQGISMHALQTKYSNIKALDDPRAILQRYRKNSNNTY
FT                 NKQGNTNANTNISTTHKNATQNNQFASNNNNTKQNQGGQPNTNNNASPPRS
FT                 DQVNQQSYNRSQPTQNPNFKPNYNNKGNSSRQTRMSHMSVDTQKNDPTPME
FT                 IGTLEEKQAEEEEEEQVNFLIPCLEHPYP"
FT   CDS           1094..4381
FT                 /product="Gypsy-29_DWil-I_2p"
FT                 /translation="SHTHGDWDFRRKTGRRRRGRTGKFFDSLPRASLPIIV
FT                 WTIGKEKIKCLVDTGATTSILKSKILEFQYPKTELTKPCSYKTLNGINVVK
FT                 YTVTTPLPKEIPYSGTLQWNLIDFSNKNFSAIIGQNFLKAFNAQINNTERY
FT                 VQLLDRKFYFLDYEYPEAMHNACALQPVNKEEIRDRFNLAHLNDEERRAVE
FT                 TLLAESDDLFFQEGDVLSATNQIFHEIITTVDRPLYSKIYRYPQIHEKEIN
FT                 RQIKEMLEQNIIKKSNSPYNSPLWIVEKKLDNSGSKKFRIVIDYRKLNEFT
FT                 VDDRFPIPNLNSLLDKLGRSQYFTTLDLAKGFHQILVREEDRPKTAFSTPS
FT                 GHYEFVRMPFGLKNAPSTFQRLMNEVLKDHINDNCVVYMDDILIFSTSLQE
FT                 HMTTLRKIFRTLKEANLKIQVDKCDFLKKETQFLGHILTTHGIKPNPDKVH
FT                 IIQNLKLPKTAKQIKSFLGMTGFYRKFVKDYAKIAFPMSRYLKKNETINTN
FT                 DPSYIAAFEKLKTLVTNSPVLRYPNFSKKFTVTTDASNFAVGAVLSQESHP
FT                 IAYASRTLNQHECNYSTIEKELLAIVWAVKYFRPYVYGREFDLESDHQPLK
FT                 WLMAKYTGKDISPRLQRWLINLGEYNFHIEYIKGKNNNIADFLSRIKEDEI
FT                 NLMEVEPTDEEDNKSLTETVHSKEEDQGFNMSILETAVNRFKTQIIFTEKK
FT                 PNTIVQVFGRKRVYISKEDLENNQAVNILRREITAGKIGVFSHLSDHEFYQ
FT                 FQKILTKEYTSNPKVRFVKCTRFATDIESEDELHTQIALFHKNESGHCGIV
FT                 ATYQKLKLKIYHPNLKTHIHRIINNCDVCSGGKYDRKPIKNNFHLTETPKT
FT                 CNEIIHVDTYVNSKQSFIIFIDKFSKHATCLPLTDRNSITIVEHIQQFLSI
FT                 KGKVQKFVFDNEFNSLNVREFLEKEGIEYHVTKPNSHTGNSDVERLNNTLT
FT                 EKIRTLNIEEKRPITEQMARAVYFYNNTHHTTTKSTPFEVQNHKVDHKELY
FT                 DRMSAQKAEKISKLNKNRETYIETRTEGFIKNYKNLRHKEEPKFRKTKLQN
FT                 IHTTNIKRPTKFSDNVDTPHHVPVANTVDGNDQHNPDPG"
FT   CDS           4326..5723
FT                 /product="Gypsy-29_DWil-I_3p"
FT                 /translation="MCLLPTLSTAMINITPIQAETGFISLGESTVELVSEF
FT                 KMVLHIISPEEILELTNIIQNNTKILVKKDRHRLDTEIETIKIKIRSITPN
FT                 SLARQKRGLINAIGKAQKWLTGLMDDDDRETIMNHLLNNQENQNNIINNIN
FT                 KQVNINNDLQNSINTLKEVILDDREKITKTLNNIETYNTMLRTDIMYHDQL
FT                 LKLKFLHDKVDTILDTIASAKYNLFHPSILTNKEFILYNIDFYKIKLIRMG
FT                 VMTYDTNIIIAIKIPTNIITTTVFLITPLTNQKNKRIDMSPERVIKIENKT
FT                 YTYEEQKTINELKLSSNCIIKRNCKMIEDVEFKTKLINEGTLLISNAQDNE
FT                 IQYNCNNTTNSEILRGNFLIEFTNCTVRIDETYYKNNQEIYIQSFANEEEE
FT                 ENSFNFTEKQTFKDIVLKEIENTKTIKEIKIQTIVSNSFGIVSITLVLLFI
FT                 GIYSYNKCKRGIQENPSSKGG"
XX
SQ   Sequence 5725 BP; 2330 A; 1138 C; 955 G; 1302 T; 0 other;
     ggcgcagtcg aaatcggaca aatacgttca gaattaacca aagttaatct gcgagaaatt        60
     tttttttaat ttaaaccaca atggaagcag agatggataa tttaagagca gcattgcttc       120
     aacaagaagg agagttgaac ctattaaggc aacaaaatca acaacaacaa caacaactgc       180
     aacaacaaca gcaacaacaa caacaacaac cattccagtg gctgtcaaac aaagatatca       240
     tccagcagtt tcgccagcta aggcagctcg acgaccaaca tgatgtattg gcttttataa       300
     aatctgtgga gttcctcatg acattatgcc agggaaacgc attgctgatc cagtttggca       360
     ctagcatcgt cgctaacgaa aaggtgtcgg gaacagcagc aaatttcatc agacaattgg       420
     ggatggagcc tagctgggac caaatgaaga ccaaactgat ggagcaaatg cgacccagga       480
     tgacctacga ggacgtattc gatagatgca gattcatcaa agtgagtagt ttaagagatt       540
     tgttccagga gtttgagaaa gcaaagtgcg aaataaataa aatatatatg ttcgacgaat       600
     ccaaaccagc catgtatgaa aatgataaag tagatagaga tttgttaaac atgttaatga       660
     ataaaataga cactccattc aggattcatg tcgatcaggg catatctatg catgctttac       720
     aaacgaaata ttcaaatatt aaagcactgg acgatcccag agctatctta cagaggtata       780
     ggaaaaattc gaacaatacc tataacaaac agggtaacac taacgctaac accaacatta       840
     gcaccactca taaaaacgca acccagaata atcagtttgc tagtaataat aacaatacca       900
     aacagaatca aggtggccaa ccaaacacca ataataacgc cagcccacct cggagtgacc       960
     aagtcaacca acagtcgtat aacaggtcac aacccaccca aaatccaaat tttaaaccta      1020
     actataacaa caagggtaac agctcaagac agacaagaat gtctcatatg agcgttgaca      1080
     ctcaaaaaaa tgatcccaca cccatggaga ttgggacttt agaagaaaaa caggcagaag      1140
     aagaagagga agaacaggta aattttttga ttccttgcct agagcatcct tacccataat      1200
     agtgtggaca ataggaaaag aaaaaattaa atgcttagtc gacactggtg cgacgacaag      1260
     catcttaaaa tcaaaaattc tcgaatttca ataccccaaa acagaactca ccaaaccatg      1320
     ctcttataaa actcttaacg gcattaacgt cgtgaaatac accgtaacaa caccacttcc      1380
     aaaagagata ccctactcgg ggacactaca gtggaatctt atagatttct caaacaaaaa      1440
     tttctcggca ataataggcc aaaatttctt aaaagccttc aatgctcaaa tcaacaacac      1500
     agagcgatat gtacaattac tcgatagaaa attttatttt ttggattacg aatacccaga      1560
     agccatgcac aatgcttgtg ctctgcaacc cgtgaacaaa gaagaaatac gagatcgctt      1620
     caacctcgct catttaaatg acgaggaacg tcgagccgtc gaaaccctat tagcggaatc      1680
     tgacgactta ttttttcaag agggggacgt tttgtcagca acaaaccaga ttttccacga      1740
     aataattacc acagtggata ggcctttata ttctaaaata tatagatatc cccaaataca      1800
     tgaaaaagaa ataaatagac agataaagga aatgcttgag cagaacataa taaaaaagag      1860
     taactcaccc tacaacagtc ccttatggat cgtcgagaaa aaactcgata attcagggtc      1920
     aaaaaagttc agaatcgtca tcgattaccg taaattaaac gaattcacgg tcgatgacag      1980
     atttccaatc cctaatctaa actctctatt ggataaatta ggtagatccc aatatttcac      2040
     aaccctcgat ctggcgaagg gttttcacca aattctcgta agagaggaag acagaccaaa      2100
     aacggcattt tcaacaccgt caggtcacta tgagtttgtc agaatgccgt tcggactaaa      2160
     aaatgctcca tcgacatttc agaggctcat gaatgaagtc ttgaaagacc atattaatga      2220
     caactgtgtc gtctacatgg acgacatatt aatttttagc acttcccttc aggaacatat      2280
     gaccacccta aggaagatat ttagaacctt gaaggaggca aatttgaaaa ttcaagtaga      2340
     taagtgtgac ttccttaaga aagaaacaca atttcttggc cacatcctga ccactcacgg      2400
     tattaaaccg aacccagaca aagtacatat tatacaaaat ttaaaattac ctaaaacagc      2460
     aaaacagatt aaatcattcc tgggaatgac aggattttac agaaagttcg ttaaggatta      2520
     tgcaaaaata gcattcccta tgtcaaggta tctgaagaaa aacgagacga tcaacactaa      2580
     tgacccaagc tatatagctg cattcgaaaa gttgaagaca ctagttacaa acagtccagt      2640
     cctacgatac ccaaattttt ccaagaaatt cactgtcact acagacgcca gtaattttgc      2700
     ggtgggagca gtgctatcgc aagagagcca cccaatcgca tatgcatccc gaacattaaa      2760
     tcaacatgaa tgcaactact cgactataga gaaagagctt ctagccatag tgtgggccgt      2820
     aaagtacttt cgaccgtatg tttatggtag agaattcgac ctcgagagcg atcaccaacc      2880
     cttaaaatgg ctgatggcta aatatacggg caaagatata agcccaagac tgcagagatg      2940
     gctcattaat ctaggggagt acaatttcca tatagaatac ataaaaggaa aaaataataa      3000
     tattgccgat tttttgagta ggattaaaga agacgaaatt aacctaatgg aggtcgaacc      3060
     aacagacgaa gaagacaaca aatccctgac tgaaacggtt cactctaaag aagaggatca      3120
     gggctttaac atgtccatac tagaaacggc agtcaacaga ttcaaaacac aaataatttt      3180
     cacagaaaag aaacccaaca ccatagtaca agtgtttggc agaaagagag tttatattag      3240
     caaagaagac ttggaaaaca accaagcagt aaacatcctc agacgagaaa taacagcagg      3300
     aaagatagga gttttttcac acctaagcga ccatgaattt taccaatttc aaaaaatatt      3360
     gacaaaggaa tacacttcca atccaaaagt aaggttcgta aaatgtacca gattcgctac      3420
     agacatagag tctgaagatg agttgcacac ccaaatagct ctgtttcata aaaacgagag      3480
     tggccattgc gggatagttg ctacctatca gaaacttaaa cttaaaattt accatcccaa      3540
     tctaaaaaca catatccaca gaataataaa taattgtgac gtttgcagtg gtgggaaata      3600
     tgataggaaa cccattaaaa acaacttcca tctaacagaa acaccaaaaa cctgcaacga      3660
     gataatacat gtggacacat atgtgaattc aaaacaatct ttcataatat tcattgataa      3720
     attctcaaaa cacgccactt gcttgccact gaccgataga aatagtatca caatagtaga      3780
     acacattcaa cagttcttgt ccattaaagg gaaagtacag aaatttgtct tcgacaacga      3840
     attcaatagc ttgaacgtca gggaattcct ggaaaaagaa ggcatagaat accacgtaac      3900
     aaagccaaat agtcatactg gcaatagcga tgtcgaaaga cttaataata cattgacaga      3960
     gaaaattcgt acactaaata tagaagagaa aagacctata actgaacaaa tggccagagc      4020
     tgtatacttt tacaacaata cacaccacac caccacaaag tctacaccat ttgaagtaca      4080
     aaaccataaa gtcgatcaca aagaattata tgacagaatg tcagcacaaa aagctgaaaa      4140
     aatatcaaaa ctaaacaaaa acagggaaac ttacatagaa accagaacag aaggatttat      4200
     aaaaaattac aaaaacttaa gacacaagga agaacccaaa tttaggaaaa caaaattaca      4260
     aaacatccat acaacaaaca ttaaaagacc tacaaaattt tcagataacg ttgacactcc      4320
     tcatcatgtg cctgttgcca acactgtcga cggcaatgat caacataacc ccgatccagg      4380
     ctgaaaccgg attcatatcg ctgggggaaa gtacggtgga gctggttagc gagttcaaaa      4440
     tggtcctaca tataataagt ccagaagaaa tattagaatt aaccaacata atccagaata      4500
     atacgaaaat tctggttaaa aaagacaggc ataggctaga tacagagata gaaactataa      4560
     aaatcaaaat aagatccata accccaaatt cgctagcaag acaaaaacgc ggccttatca      4620
     acgcaatagg aaaagctcag aagtggctca ccggtctcat ggatgatgac gacagggaaa      4680
     ccattatgaa tcatctcctt aataaccaag aaaaccaaaa taacataatt aacaatatta      4740
     acaaacaagt aaacataaat aacgacttac aaaattctat taacacactt aaagaagtaa      4800
     tattggatga cagggaaaaa ataaccaaaa cccttaacaa cattgagaca tataatacca      4860
     tgctcagaac agacataatg tatcatgacc agctgttgaa gttgaaattt ttgcatgata      4920
     aagtagacac catcttggac acaatagcgt cagccaaata taacctcttt cacccctcaa      4980
     tactaacgaa caaagagttt atactctata atatagattt ttacaaaatt aaattaattc      5040
     gcatgggagt catgacctat gacactaata taatcatagc aatcaaaata ccaactaaca      5100
     taataactac cacagtattc ctaataaccc cactaactaa tcagaagaac aaaagaatcg      5160
     acatgagtcc cgaaagagta ataaaaatag agaacaaaac ttatacatac gaagaacaga      5220
     aaacaataaa tgaactcaag cttagctcta actgtataat taaaagaaat tgtaaaatga      5280
     tagaagatgt agaatttaag acaaaattaa taaacgaagg tacattgtta ataagtaatg      5340
     cacaagataa tgaaattcaa tacaattgca acaataccac caatagcgaa atattaagag      5400
     gaaacttcct catagaattc acaaattgca cagtccgcat agacgaaaca tactacaaaa      5460
     ataaccaaga aatttatata caatcatttg ccaatgaaga agaggaggaa aactcattta      5520
     actttaccga aaagcagacg tttaaagata tcgtattaaa agaaatagaa aacacaaaaa      5580
     caattaaaga aataaaaata caaacaatag tttccaacag ttttggcata gtatcaatta      5640
     ctcttgtact cctcttcata ggaatatatt cctataacaa atgtaaaaga ggaatccagg      5700
     agaatccctc atcaaagggg ggagg                                            5725
//
ID   Gypsy-29_DWil-LTR repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DWil_;
KW   Gypsy-29_DWil-LTR; Gypsy-29_DWil-I.
XX
NM   Gypsy-29_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-455
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 455 BP; 201 A; 78 C; 62 G; 114 T; 0 other;
     agttatgaaa ccaatcaaag tcgcacaaac aaataacata attatacaaa aagccaaagc        60
     tgaacaaaca aataaaccta tgcatgggaa tgttgataac gacgagatca gcataatcat       120
     gcagaagtac ttgaaccaaa atcaaatttc aaaagcataa gcaacagaag cgtcgccgtc       180
     gcttccgttg caaatgctcg atcagcaatt tatgaaacaa acgaaatggg catttgcata       240
     tgccaaagaa aatcatattt tttagtctta agattcaatt gtaaccagac agaagtcgaa       300
     gttccaaact aataaagaaa ctcacaatat ctaaagatat ccagtgaaca aaaatcgttt       360
     aattctgcaa aatttaaatc aaaaatttaa ataaataaat aaagatatct aaagatatct       420
     agtgactaaa attcgttctt tcaacgaata taatt                                  455
//
ID   Gypsy-29_DYa-I repbase;    DNA;    INV; 4674 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4674
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1844-1844 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           405..4631
FT                 /product="Gypsy-29_DYa-I_1p"
FT                 /note="SAP, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MVKIAELKADQLRYLLRERNLGVSGSRAELVQRLVDH
FT                 ENSEEVDLAHAVGNMSQQEEAFAAQAAAISQLQQQMTTLTNMMAQFVNNMP
FT                 TANQQQQRQQREDEIDIDDFINRNPGDQAAISHRQASVKEIANTLPDYDPG
FT                 DDNSISVNQFIDRVNKVVDAYHWDEKFVLLAIYTKLKGPAKMWLDSSQILH
FT                 TTWNSFAAAIREEFGSEPDEAEIHFNMANATRRSKETVKEYCFRMSALGVR
FT                 FKLSEAAVIRYVRAGLQHRELQNSIAAIHFSSMKEFRDATEAYFINRGRPN
FT                 LNKKEFLPKSSTFEVKQENEMKQSKPREARACFNCGDVGHFANSCPKERRK
FT                 TRCSKCNKFHATDVICQAAQVMRLGASNQDKLFTRLIHINEKGYNAFIDTG
FT                 SQASIIRKSIADEIGADRQECFMKIVGICGGSRILTEALVLDIEIAGKIVT
FT                 AKFYIAEDNMLQEDLLLGQDVITCAEFLWKFEPTEIELKRAVHQPVTRSTE
FT                 TIFKNLLVNFQKEAERIKVCSLLEKFANVFSTGLEGIGKTNVVQAKIDVEG
FT                 GQVVSQAPYRVSEPKKEVVAKMVDELLERDIITPSTSEYASPVVLIKKPNG
FT                 SDRLCIDYRRLNKLIRKENFPVPNIEERLQEAKRFAYFSSLDLNSGYYQIE
FT                 MEPESRKFTAFITTDGLFEFKRLPFGLKNAPAAFNRLMAELQKRVKKGDMI
FT                 HYMDDILIGSQTFDEMYEKLERVLQVLRXCGLTLNLGKCELYKQSITFLGH
FT                 QIHPDGISPGEVKTNAIADFEKPNNITEVRQFLGLTGYFRKFVPGYAIISE
FT                 PLRILLRKDQKFKWEQPQDDAFEKLKISLTSKPVVTSYRIDAEHEVHTDAS
FT                 AIGLAGVLMQKDDDQLKPIAYYSRSTSKPEKNYHSYELEALAVVESLERFK
FT                 YYIYGKMVKVITDCNALKTSMEKRELIPRIARWWLRIQEFDIDIIHRAGTQ
FT                 MCHVDALSRAPVEESHEMETASLKISKTIIDEADWLFAIQLQDEKIQKIVA
FT                 DMKAEKKSENDEYVIEQDRLFRKYDGKMLWVVPKQLRFHILHECHDKAGHM
FT                 STDKTISRILNLFWFPRMRNFVKSYIKSCVGCAMYKIPGGRQEGQYHYDDI
FT                 KPIPFSTVHMDHLGPFPKSSKRNEHILVLVDAFTKFTIVRAVKSTATKHVL
FT                 DALQEVTSYVGMPDRIVTDRGTAFTSKDFEKYCKSNKVKHILNAVRTPRAN
FT                 GHAERTNRIIMSMLLPSNENEKRWDEMLRSIQWSINTMVNSTTKCSPFQLL
FT                 YGYEPRDVLKNTLTSVIQNQDQGMMTDAELEKLRADAANTINDHRAVAKKR
FT                 YDAAHSKPTVYSPGDIILVENEPFSTGTSRKLEPRYKGPFIVSKVLPNDRY
FT                 LVEDLPHAQRKQRHYKSVYSSDKMKRWCEIPPDEPDEDDEEEDDTN"
XX
SQ   Sequence 4674 BP; 1511 A; 973 C; 1124 G; 1063 T; 3 other;
     gttcagaagt gggataactc gagttggtaa tgtgtaagag gcagtaacag tgtgagacac        60
     ggaaaagcag aggcagcaga agaatcgtcg gcgtggaaag tttgtaatgg gataggtgtt       120
     cccaaaggtc tagaggacaa tagattacaa ataacggata aggcatcctt ttctacgtgg       180
     ctgatggatt caaagcggag tactcaggaa tctgtgtgaa cttggagata tgtacatgca       240
     aaaagcttgt gtgtatgtgt agcgtctggt gaaattcaca gaaggtgaaa ttcacgagaa       300
     tcgtggtgaa ataccgatca cccttgcaga cgggcataca gcggtgctcg tggtgaattg       360
     tggttcggcg taaataggag agaagcgatc atttttccga gaagatggtc aagatagcgg       420
     aactcaaggc agaccagttg cggtatctgc taagagaaag gaatttggga gtttcagggt       480
     ccagagcaga actagtgcag agactagtgg accacgaaaa ttcggaagaa gtggatttgg       540
     cacatgcagt tggaaatatg agccaacaag aggaagcatt cgcagcacag gcggctgcga       600
     tttctcaact acaacagcag atgacgacgc tgacaaacat gatggcgcag tttgtcaata       660
     atatgccaac agctaatcag cagcagcagc ggcagcaacg ggaagatgaa attgacatag       720
     atgattttat caaccgtaac cctggagacc aagcggcgat cagccataga caagcgtcgg       780
     taaaggaaat cgcaaacacc ttaccagatt atgaccccgg agatgacaat tcgatctcag       840
     tcaatcaatt catcgatcgt gtcaacaaag tggtagatgc gtatcattgg gatgaaaaat       900
     ttgtacttct ggccatatac acaaagctga agggtcccgc caaaatgtgg ctcgattctt       960
     cgcagatatt acacaccaca tggaacagtt ttgcagcggc aatccgagaa gaattcggat      1020
     cagagccgga cgaggcagaa attcacttca acatggcaaa tgcaaccaga cgatcgaagg      1080
     aaaccgtaaa ggagtattgt ttccgtatgt cagcacttgg agttcgattt aagcttagtg      1140
     aagcagccgt catccgatat gttagagcgg gtctacagca cagagagttg cagaacagta      1200
     ttgcagccat tcatttttcg tcgatgaagg agtttcgcga cgctaccgag gcatacttta      1260
     taaatcgagg gaggcccaat ctaaataaga aagagttctt acccaaatcc agtacttttg      1320
     aggtaaagca ggaaaatgag atgaagcaat caaagccaag agaagctaga gcatgcttca      1380
     attgcggaga tgtcggacat tttgctaatt catgcccaaa ggagaggaga aagacgcgtt      1440
     gctccaaatg caataagttt catgccaccg atgtgatttg ccaagccgca caggtgatgc      1500
     gtttgggtgc atccaatcag gacaagctgt tcactcgttt aatccacatc aacgagaaag      1560
     gctataacgc tttcattgat actggaagcc aagccagtat tattcgcaaa tccatagcgg      1620
     acgagatcgg cgcagatcga caggagtgct tcatgaaaat tgtgggcata tgtggaggtt      1680
     cacgtatcct taccgaagct ttggtactag atatcgaaat tgctggaaaa atcgtgacag      1740
     ccaaatttta catcgccgaa gacaatatgt tgcaggagga cttgttgttg ggacaagatg      1800
     tcatcacatg cgctgaattc ttgtggaaat tcgagccaac cgagattgaa ctcaagagag      1860
     cagttcatca gccggtaaca cgttcaaccg agactatttt taaaaacctt cttgttaatt      1920
     ttcagaaaga agcagaacga atcaaagtat gcagcttgct cgagaagttt gcaaacgtct      1980
     tttccacagg cttagaaggc ataggcaaaa ccaacgtcgt ccaggcaaaa attgatgttg      2040
     agggtggcca agtagtctct caagcgccat accgagtgtc cgagccgaag aaggaagttg      2100
     tcgccaagat ggtcgacgaa ctattagagc gagatatcat tactccatca acgtcagagt      2160
     acgccagccc agtggtgctc atcaagaagc cgaacggtag tgaccgtctt tgcatcgatt      2220
     accgccgcct gaacaagctg atcagaaagg aaaatttccc cgtaccgaat attgaggaaa      2280
     ggttgcagga agcgaagcgt ttcgcatatt tttcgtcact mgacctgaat agcggatact      2340
     atcagatcga aatggaacca gagagtagga agttcactgc attcatcaca acggatggac      2400
     tatttgagtt taaacgtctt ccttttgggc taaagaacgc acctgctgca ttcaacagac      2460
     tcatggcaga gttacagaaa cgagtgaaga aaggcgacat gattcattac atggacgata      2520
     tcctcattgg cagccaaact tttgatgaga tgtacgaaaa actagagaga gttttacaag      2580
     tattgcgaga stgcggattg acgttaaatc taggcaagtg tgagttgtat aagcagtcaa      2640
     tcacattttt aggtcatcaa atacaccctg atggaatcag ccccggagaa gtcaaaacta      2700
     atgccattgc agacttcgaa aagccaaaca atatcaccga agtgcgacag tttttgggtc      2760
     tcactggata cttccggaaa ttcgtacctg gatatgcaat aatatcagag ccattgcgaa      2820
     tccttttacg caaagaccaa aagttcaaat gggagcagcc acaagacgat gcttttgaga      2880
     aattgaagat atccctcacg tcaaagcctg ttgtaactag ctaccgcata gatgctgaac      2940
     atgaagtaca tacagatgca agtgccattg gattagctgg agttctgatg caaaaagatg      3000
     acgatcaatt aaagcccatc gcatattatt ctcgatccac gtccaagcca gagaaaaact      3060
     accacagtta cgagctagaa gccttagccg tcgtcgagtc gttggaacga tttaaatact      3120
     acatttatgg aaaaatggta aaggttatca ctgattgcaa cgctttaaaa acatcaatgg      3180
     aaaaacgaga gctgataccg cgaattgcaa gatggtggtt gcgaatacaa gagttcgaca      3240
     tcgatattat tcatagagca ggaactcaga tgtgccacgt tgacgcgtta agtagagcgc      3300
     cagttgaaga atcgcatgag atggagacag catccctgaa gatctcaaaa acaatcatag      3360
     atgaagctga ctggttattt gcaatacaac tacaagacga gaaaatccag aaaatagttg      3420
     ctgatatgaa agccgagaag aaatctgaaa atgacgagta tgtaatcgag caagatcgcc      3480
     tgtttcgcaa atatgacggc aagatgcttt gggttgtgcc gaagcagttg agattccata      3540
     tcctccatga atgccacgac aaagccggac acatgagcac agataaaacc atcagtcgga      3600
     ttttgaatct gttttggttt ccccgaatgc gtaattttgt aaaaagctat atcaagtcct      3660
     gtgtcggctg cgcaatgtat aaaataccag gtggacgcca ggaaggtcag taccactacg      3720
     atgacatcaa gccgattcca ttttccaccg ttcacatgga tcacctggga ccgtttccaa      3780
     aaagttcaaa gcgaaatgaa catattttag tccttgtcga cgctttcacc aagttcacca      3840
     tcgttagagc agtaaaaagt acagcaacaa aacacgtcct agatgcccta caagaagtca      3900
     ccagctacgt gggaatgcca gatagaattg taaccgatcg aggtaccgca ttcacgtcca      3960
     aagattttga gaaatattgc aagtcgaaca aggtaaagca tatactcaac gccgtgagaa      4020
     caccaagagc caacggtcat gcagaaagga caaatcgaat tattatgtca atgcttttgc      4080
     cttcaaatga aaacgagaaa cgttgggacg aaatgctgcg atcaatccag tggagcatta      4140
     ataccatggt aaatagcact actaaatgtt ccccattcca gcttctatat ggttatgagc      4200
     cccgagatgt ccttaaaaac acgctgacga gtgtgatcca gaatcaagac caaggaatga      4260
     tgactgatgc cgaattagag aagctccgag ctgacgctgc gaacactatc aacgaccaca      4320
     gagcagttgc caagaagaga tacgacgccg cccattccaa gccaactgtc tatagccctg      4380
     gagacattat tttggttgag aacgagcctt ttagcacagg cacgtcgcgc aaactagagc      4440
     cgcgatacaa aggtccwttt attgtatcga aagtgctgcc caacgaccga tatcttgttg      4500
     aagatctgcc acatgcccaa cgaaagcaga gacattataa gtcagtgtat tcatcagaca      4560
     agatgaagcg ctggtgcgaa attccccccg atgagccaga tgaagacgac gaagaggaag      4620
     acgacacaaa ttaataatca cgcgaggacg ccgtgatcgt caggagaggc cgaa            4674
//
ID   Gypsy-29_DYa-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-238
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1845-1845 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 238 BP; 85 A; 44 C; 50 G; 58 T; 1 other;
     tgtaacgagc gggttgttgt caaggattag tttaagcaaa accctatact gtaatcgata        60
     gctaagttga attaagatcg agatcgatag aagamtaaga agaggagatc aaaaaggcac       120
     gcgtaaggaa gcgcacgtaa agtttgtaga agcgaatctc atttagcgac tgttaccctc       180
     taagccaata aaaacactcc accattcgga aaactagcca tcctgtcata tttttaca         238
//
ID   Gypsy-29_HeAr-I repbase;    DNA;    INV; 5184 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5184
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5577-5577 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. An insertion is masked by X.
XX
SQ   Sequence 5184 BP; 1489 A; 1015 C; 1031 G; 1245 T; 404 other;
     tcagaagtgg gatcaccacc cacttctcct agtcattctg atgcaattcc catagctaac        60
     acttctgtta gcggggttcc agccgagttc tttgctcaaa tgatgcagat gatgaagcac       120
     gtatcggatc gtatgacgaa ggtcgattct aaagtgaaaa tcagtgatat atttttgccg       180
     tcatatgacc cggacagtaa tataggaatt cgcgagtggt gtaagcatgt tagcactgca       240
     atggacacgt acaacctcag tgattatgat gttcgaatga aagtaggtag tctattgaaa       300
     ggtcgtgcga ggttatacgt agacaattgg ttagtgtcca cggggtcttg ggaggagctg       360
     cgcgatgtgt tgatcacgac atttgaacct gaaagtcggt attcgcgaga tgtatttcgg       420
     tttcgagaac atgtttacga cagtagcaaa aacattgcac agtttctatc cgaggcctgg       480
     gtattgtggc aacgtgtcac caaagataag ctgactagtg atgacgcggt ggaggctgtt       540
     attggctgcg ttagtgacga aagattacga attgaattat taaatgcacg tgctaaatcg       600
     gtaccagaat taatctctgt agcttcatca atacgtccaa caaaacgttt aaattcgaat       660
     cagacgtcac agaattcaaa caaacgccca cgtttggcag aaaagttata ttgtcaagtt       720
     tgtaagagga ctaaccatga tacacgtgat tgtcgttttg cgaacaaaaa cacagctcca       780
     cagccgcgtc aggtttcaaa tagtgaaacg caaaacgctg tcaaacctac ctgtacgttt       840
     tgctccaaag ctgggcatac atatgaaacg tgttttaaac gtgaacgcac agtggtttca       900
     aatgtgaatt gcgttggcaa accaaatctt acttggttac ctgtcactat tggaaatttt       960
     gaatttactg ctatttttga tagtggagcg gaatgttcac tgatacgcga gtcggtggct      1020
     gcaaaaattc cgggtaaacg cgttgatcaa gtccattact tgaagggcat tgggcagttt      1080
     acattgatgt cgttaacttg tttaactaca atttgtcaga tagacaactt acgcgtggaa      1140
     ctacagtttc atgtggttcc ggattacgaa atatgctctg atatgctgat cggtactaac      1200
     cttattaaga acacatacct aagtgtgtta gttacggccc agggtgccaa attactgcac      1260
     caaccgatgg tttatcacat acattcacaa gatgaaaaat ttgatagact tattaccgac      1320
     ttatctagtg aggatcacta tgtaagttat gatgtaxxxx xxxxxxxxxx xxxxxxxxxx      1380
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1440
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1500
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1560
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1620
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1680
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1740
     xxxxxxxxxx xxxxxxcaag gatcagataa acgagttaaa aatactgttg aacaagtata      1800
     cacatttgtt cattcgtgga tatcsgcgta cgcgggttaa cacgggtgaa ttagaaatcc      1860
     gtttaaaaga tcctaacagg tatgtagagc gtaggccgta caaattgagt cctgtcgaaa      1920
     gagaaaaagt cagagaaatc gtgaccgagt tgttagaaca taatatcatt agagagagta      1980
     cctctgcttt ctctagtccc attatattag tgaaaaagaa gaacgggcaa aatcgcatgt      2040
     gcgtagacta ccgsgagctg aataaaaata ctcttaggga tcattaccct ctacctatca      2100
     tttctgacca aatcgatcaa ctatcagggg gcttctacta ctcaacattt gatatggcag      2160
     cgggatttca tcaaataccg gtgtccaaaa actctattga aaaaactgcc ttcgtaacgc      2220
     ccgacggcct ctatgagtat ttggccatgc cgtttggttt aagtaacgct gtttctgtgt      2280
     accaaagatg tataaataga gctctggggc ctctacttta cgggcctaat cccatatgtc      2340
     aagtatacgt agatgacgta ctcacaaagt gcagggactt ttcagagggt ttgtcacgca      2400
     ttgagagaat actcatgact cttcaggaag cagggttttc aatcaatgtg gagaagacgg      2460
     ccttctttaa gcgttctatt gagtacctag gtaatatcat atcagacgga caagttagtc      2520
     ctagcccgac gaaaatacag gccctaacga aagcccccat tcccacaact gttaaacaag      2580
     tacggcaatt taacgggtta gcggggtatt ttagacgctt tataccaaac ttttckcgtg      2640
     ttatgacacc actatacgag ttaactaaaa aggacgcaaa atgggawtgg aatacaaggc      2700
     atgatcaggc taggaattat gtcatccaac acttgtctac tgcgcctacc cttttgatat      2760
     tccaggaaga cgctcctatt gaactgtaca ccgacgccag cagcatcggc tacggggcgg      2820
     tgttggtgca gatagttaac gggcgacatc atccagtggc ctacatgagc ctgcgtacca      2880
     ctgaagtaga gagtcgatac cactcctacg aacttgaaac tttggcggtg gtaaaagcaa      2940
     tcaaacattt tcgtcaatac ctgtacggga ggaagtttaa ggtcatcact gactgcaatg      3000
     cgcttaaagc gtccaaattc aagaaagatt tacttccacg aatccatcgc tggtgggcgt      3060
     ttctccaaaa ttatgatttt gaaatagaat atcgtaaggg tcagaatctt cagcatgccg      3120
     atttctttag tagaaaccca aatatggaga gtacagtcaa tactttgacc agaaatacgg      3180
     aatgggttca gatagagcag agacgagata gtgacttgcg cttacttatt gatggtattg      3240
     ccagcggtaa tccagtagag aactatgtcc tggtggatgg cgtactcaag aaacgtctta      3300
     ccgactcacg attcggcaat tatgaagcta ttgtggtgcc gaagtcattt caatggagct      3360
     taataaattc gtatcacact gctttacaac acccgggatg ggagaagacg ctatgtaaat      3420
     tacgagagtc ctactggttc gacaagatga gctcaatcgt tcgaaagttc gtggataatt      3480
     gcattgtatg caaaatgtca aaaggtcctt ctggtgctac acaagttcaa ctgcatccta      3540
     tacaaaaacc aactacggcg ttccaagtta tccatatgga tattacgggc aaattgggta      3600
     ctagaaacca aaatggtcag gacgagtatg tgattgttat catagacgcc tttaccaaat      3660
     acttgctcct taattattca aatgataaaa gtccaagcag ttgtctcgcc gcattaaaac      3720
     gcatgatcca tttatttgga acacccgtac aagttatagt tgatggaggg agagaattcc      3780
     tgggagattt caaaaactat tgtgacaact ttagtatcaa cattcacgcg attgcgccag      3840
     gagctagccg agcgaatgga caagttgagc gcgtcatggc tacactgaag aacgcgttga      3900
     ccatggttaa aaattatgaa accgagaact ggcaaactgc tttggaagcc ctgcaattgg      3960
     cattcaactg cactcctcat cgtataaccg gaatggcgcc actcactctc ctgactcgaa      4020
     gacagcatac tgtaccccca caacttttga ggctagtaaa ccttgatgaa gaaactattg      4080
     attttgacat actcgaccaa caagtccaac agaaaatgca agctgctgct cagtatgaca      4140
     agcgacgctt tgatcaaaat aaggctagga taaggccatt tcaaaaaggt gattacgtac      4200
     tgattaaaaa taatccacgt aatcaaacat gcctggacct caagtacagt gacccttatg      4260
     agatcgtgag ggttgaagat aaggacagat acatcgttaa acgagtaaca ggaagaggac      4320
     gacctcgtaa ggttgctcac gaccagcttc ggcgggcacc gcagccgggt gatcagggtg      4380
     ccatgtcgac gcactctgat gatgaccaac aaaacaaccc tgatgacctc cagccccaga      4440
     cgaacacaag tgacccgcag ccatcaacgt cacaggctgc gatgacgttt gattgttaaa      4500
     caatcggtga gttcatttca taatttattc tataacttaa acacaaagag aattaacaga      4560
     gaaataacaa cccagtttaa aataacaata atgaactaac ataaaaattt cacataacaa      4620
     gacagtatta atccttgcat gtcccatctc ccacctaagt tatcattttc agagcctctg      4680
     tggaccacgg tcaaataaag gcctagacca cagcatcgtc ctacccattt cctttagagc      4740
     ctctgtggac cacggcgtac atgaccgccc agaccacagc cacaatactt ttcaaatttt      4800
     aactcaataa actgtgtgga ccacggcgta catgaccgcc cataaccaca ttaccaagac      4860
     aaagatgtac tgtggaccac ggcgtacatg accgcccaga ccacatcatc aatcaaaaat      4920
     gcaaggatgc gtggagacat ttgcatttaa taacaaaaat atgaaacgtg taaaatgcgt      4980
     ggagcattat aaacacggtc tacgagaaca tatttgctta tcattattac agctcattcc      5040
     tatgtgcaaa tttaaaatta tatttcaaag gtgtatttca atacctaccc taggtatgct      5100
     gtccagatac ctagtaaaga taaaaacttt ctactttcag aatcgaggca ggcgcagagc      5160
     acgcaccgcc ccgcagaatg gccg                                             5184
//
ID   Gypsy-29_HeAr-LTR repbase;    DNA;    INV; 762 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-762
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5607-5607 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 762 BP; 225 A; 95 C; 138 G; 304 T; 0 other;
     tgtcgacgca tttgttttaa agtttattct tatttctaat ttatgattat gattaatttt        60
     aattaatttc atttctttgt tctgataaat aaattgatta atgaacttga taattaatta       120
     ggtaggtaat tctataagaa tattttgatc aattaaatgg ttcaaaaagc aacgatcatt       180
     tttaaaagga tttgaaatat tagtagttgt tacagccgcc attgtttatc gttggttttt       240
     gaatatccgt tttgttatta ctgtgtttta aaatgtgtta gttattcgac aattcgttta       300
     aaattacttt atgaattatg aaagatcaat ttgaattatt agaattaaaa agtaaacacg       360
     tgttattgta aattccccaa aacgtgacgt tcagccgcca tgttgatttc ttgcatcgtt       420
     caccgagttg actagggcac tttgctcgtg gcgcttggac cgaacggtcg tttggtgagt       480
     gctttgatac tttgatactt ataattgtta ttgctattga taattattat tgtgtttatt       540
     gatttattga ttgattataa cgagtgtatg agtgtattta cttttggcta taggtatacc       600
     aaaactgtag tgataaagag gttataaaaa taaagttgtt ttgtatttca aaattgtgtt       660
     tcgtttatct gatacatcat gagtgcaaat aatacggatg gtgacgtcag cggtgctgac       720
     gtcacccttc ctaaaaaccc ggctgggatt aataccccgt ta                          762
//
ID   Gypsy-29_LMi-I repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4438
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(73..1128,1101..2210,2069..2803,2659..4422)
FT                 /product="Gypsy-29_LMi-I_1p"
FT                 /translation="MEDAEKSILAIQEEIQQLQRQLEVLEVSTPSNDESSA
FT                 TMNLPIPAISSMPQTHARVEGHTQNMTLAPSAPRLQLRAPQFSPAQPEIWF
FT                 AILENIFTQQKITDDQEQFTLAVSNLDQRATAVVSDIIQQPPRHRAYHALK
FT                 TALITRSTKTPAQKITQLLYYERRGDRTPSEYWRHLRSMVEVNVVSNELLL
FT                 HIWQRQLPLEVQLTLIAHEGQCLEKLIRVADRAYDTVGSAAVASLTPTNTE
FT                 NARSNQVLEVTDKHTQLYVAGSSRRTPNLSGAQLDLQTTLENLADRLQALE
FT                 RRMETNRWPRXRRSANLSTEKHTEAQEDNPGICWYHRRFGPQATKCTKPCS
FT                 YPNGEGGPQLPKWRGRPTIGAMGRVIFKRRRRRGKHRLAAVVRTRHDGNVP
FT                 TVNAKSCDPQFERALEQKCVSKSHRLYITDKRSGLVFLVDTGSEVSTLPTY
FT                 FTPDTSAIEPLQLLAVNHSRIKTLGHKELIIDIGFETDFKWTFVVADISTP
FT                 ILGADFLAHFALLVDVSSGRLTCKDYSNGVNGVVGSDADKTICHISNLQQQ
FT                 PILHSVKHKTLHYIRTSTGPPVARRVRRISPDKLLEIKTVFEEMLNAGIIR
FT                 RSDSAWAAPLHLVRKKDGSWRPCGDYRGLNARTIPDKYPIPHIHDFTYALA
FT                 GATIFTVLDCRKAYNQIPVAPMDIPKTAVITPFGLFEFLRMPFGLKNAAQT
FT                 WQRFMMKCCRDCLSSLRIWTTFNSGYHAVWSFRVLADAFWAQKCSPDLATI
FT                 YDEVLQGLPFVFAYLDDILVFSGDAQSHTKHVAEVRQRLEDVGVVLNEEKC
FT                 ILGKSEVAFLGYKVSRDGISLLPEKLAALQELSRPKTYRQLRRLLGMINFY
FT                 RRHLPGTAAIQAPLTDALAGRYTNGKRLLKWTPEMDNAFRALKDSLKQAVS
FT                 LAHPVSDAQLAMAVDASQTAIGAALHQKVNDCWQPLGFFSKNYCHDKQTGV
FT                 PTIGSCWLFMRVCKPNSDRGSITSESERLLAATRLLFKKLLPRQTNWSAYD
FT                 RELLAIYESVKHFRPHVEAHPVTIYTDHKPIVPAFQNASDKCSPRQLRYIE
FT                 FVCQFTTDVRHIRGAENIVADYFSRACEAVTIFKYEDLAKAQKTDHQLQEL
FT                 LRDRSSSLQLQQVEVPGGGVKLWCDVSQKLPRPYVPPQFRKVVFDSVHNLA
FT                 HPGANTTVKMITERFVWPSIKKDIRSWSRTCLHCQRCKVGRHVHPEVGQFS
FT                 GLPPRFGHIHLDIVGPLPVSEGFRYLLTLVDRCTRWSEAIPLPDISAETVA
FT                 KAFVAHWLSRFGCPLHITTDQGRQFESTLFSELAKLCGFQHHHTNSYHPSS
FT                 NGMVERWHRTLKASLMCHQESWTEALPLVLLGLRTAYKADIGASVAEMVYG
FT                 EPLRIPSEFLSAAPLPDQTELPLLVQRIRDQVAKIRQTPAIHHGSHPVFVH
FT                 KALADCTHVMLRTDSARTPLQPPYTGPYQVLKRGQHTFEILQNGKNSKVSV
FT                 ERLKPAWVMPEPTSDDQTNSTEGHGLEETINYQSYDDTIGLEEVTPDSQVT
FT                 IRHDSTPTPIVRTRAGRVIKFKYPYIPGAPHFGRGAVWE"
XX
SQ   Sequence 4438 BP; 1307 A; 1023 C; 1027 G; 1078 T; 3 other;
     taattggtga cctcacgacg aaaatagtcc acgcacaata atcacagtct tgtttagagc        60
     gtgttaatag caatggaaga cgcggagaaa tcgattctcg caattcaaga agagattcag       120
     caactacagc ggcagctaga ggttctggaa gtttctacgc caagcaatga tgagagctca       180
     gccacaatga atttaccaat tccggctata tcttctatgc cgcaaacgca tgcaagagtg       240
     gaaggccaca cacaaaatat gacattagcg ccgtccgcac cgcggttaca gttacgagcc       300
     cctcagtttt cgccagcgca accggaaata tggttcgcaa ttttagagaa tattttcaca       360
     cagcagaaaa ttacagacga ccaagaacag tttacgttag ccgtcagcaa tttggatcag       420
     agggctacag ccgtagtctc tgatataatt caacaacctc cacgccatcg cgcctaccac       480
     gctctcaaga cagcattgat cactcgtagt accaagacac ctgcacagaa gatcacacag       540
     ttgttatatt atgagagaag aggcgacaga acaccatcag agtactggag acacttacgg       600
     tctatggtgg aggttaatgt agtttcaaac gagttgttgc tccacatctg gcaacgacag       660
     ctgcctttgg aagtgcaatt aacgctaata gcacatgaag gtcagtgttt agaaaaactg       720
     atacgtgtag ctgatcgcgc atacgacact gtaggctcag cagcagtagc gtctttaaca       780
     ccaacaaata ctgagaacgc acgaagtaac caggttttag aggtgacaga taaacatacg       840
     caactttacg tcgcaggatc cagtcgacga actccaaatt tatcaggagc gcaactagat       900
     ttacaaacga cgctggaaaa tttggccgac cgattgcaag cattagaacg tcggatggag       960
     acaaacagat ggccgcggsc acggcgttcc gctaatctat cgactgagaa acacactgaa      1020
     gctcaagagg acaatcccgg catctgctgg taccataggc ggttcggacc acaggctacg      1080
     aagtgcacga aaccgtgtag ttacccaaat ggcgagggcg gcccacaata ggcgccatgg      1140
     gtcgcgtcat cttcaaaagg cgccgacgac gcgggaaaca tcgcttagca gctgttgtca      1200
     gaacccggca cgacggtaat gtacccacag taaatgctaa atcttgtgat cctcagtttg      1260
     aacgagcgct tgaacagaaa tgtgttagta aatcgcatag attgtacata actgacaaac      1320
     ggtcaggttt agtctttctg gtggacactg gttcagaagt tagcactctt ccgacatatt      1380
     ttacacctga cacgtcagca atagagccct tacaactgct agctgtcaat cattctagaa      1440
     tcaagacact aggccacaag gagttgataa tcgacattgg wtttgaaact gatttcaagt      1500
     ggacttttgt agttgcagac atttccacac ctatcttagg agcagatttt ctggctcatt      1560
     ttgcactgtt ggtggacgtg tcttcaggcc ggcttacatg taaagactat agtaatggag      1620
     ttaacggagt agtaggcagt gatgcagaca agacaatatg tcatatcagc aatttgcagc      1680
     aacagccaat cttacacagt gtgaaacata agacactgca ttatatacgt acaagtacag      1740
     gacctccggt cgcgcgtcgt gtccgtagaa tttcaccaga taagcttttg gaaattaaga      1800
     cagttttcga agaaatgctg aacgctggta tcattcgacg atctgacagt gcctgggcag      1860
     ctccactcca tttggtgagg aaaaaagatg gttcatggcg cccttgcggg gattatcgtg      1920
     ggttaaatgc cagaacmatt cctgacaaat atcctatccc tcatattcat gatttcacat      1980
     atgcattggc gggggcaaca atttttacag tcttggattg ccggaaagca tataatcaga      2040
     ttcctgtagc accaatggac atacctaaaa cagcggttat cacgccgttt ggtcttttcg      2100
     agttcttgcg gatgcctttt gggctcaaaa atgcagccca gacctggcaa cgatttatga      2160
     tgaagtgctg cagggattgc ctttcgtctt tgcgtatctg gacgacattt tagtgttctc      2220
     tggcgatgca caatcacata ccaaacatgt agctgaagtg cgacaaagat tagaagacgt      2280
     tggtgtggtg ctgaatgaag aaaagtgcat tttaggtaaa agtgaagtgg ctttcctcgg      2340
     atataaggtg tcacgtgatg gaatctctct cttgccagaa aaattggctg cattgcagga      2400
     actgtcacgt ccaaagactt accgacaact tcgacgtttg ttaggaatga taaattttta      2460
     tcgtcggcat ttaccaggaa cagcagctat ccaagctccg cttacagatg cactcgccgg      2520
     acgctacaca aacgggaaac gtttgcttaa gtggacaccc gaaatggaca atgcttttcg      2580
     agctttgaag gacagtttga aacaagcagt gtcacttgca cacccagtat cggatgcgca      2640
     attagcaatg gcagttgatg caagccaaac agcgatcggg gcagcattac atcagaaagt      2700
     gaacgattgt tggcagccac taggcttctt ttcaaaaaac tactgccacg acaaacaaac      2760
     tggagtgcct acgataggga gctgctggct atttatgaga gtgtgaaaca cttccgtcct      2820
     catgtcgaag ctcatccagt aacgatatat acagatcaca aaccaattgt gccagccttc      2880
     caaaatgcaa gtgataagtg ctcacctcgt cagttgagat acattgagtt tgtttgccaa      2940
     tttactacag atgtgcgaca tattcgtggt gcagaaaaca tagtggctga ctatttctcc      3000
     cgtgcatgtg aggcagttac aatatttaag tatgaagacc tcgccaaagc tcagaagaca      3060
     gatcatcagc ttcaagaatt actgagggat aggtcatcaa gtctgcaatt acaacaagta      3120
     gaggttccag gtggtggtgt taagttatgg tgtgatgttt ctcaaaagct gccgcgcccc      3180
     tatgtcccac cacaatttcg taaggtagtg tttgacagtg tgcacaatct cgcacaccca      3240
     ggggcaaaca ccacagtgaa aatgataaca gaacgttttg tctggccatc aattaagaaa      3300
     gacatccgta gttggtcccg cacttgcctt cactgtcagc ggtgtaaggt gggacgtcat      3360
     gtacatcctg aggtgggaca gttttcaggc ctaccaccaa gattcggtca tattcatctc      3420
     gatatcgtag gtcctctacc agtctctgaa ggtttccgat atttactcac attggtggat      3480
     agatgcacaa gatggtctga agccatacca ctgccagaca tatcagctga gactgttgca      3540
     aaggcgttcg tcgcgcactg gttgtcacgt ttcggttgtc ccttgcacat aacaacagac      3600
     caaggaagac aattcgaatc cactctgttc agcgagctgg ctaaactgtg tggttttcag      3660
     caccaccaca ctaacagtta ccacccttcc agcaatggaa tggtggaaag atggcatcga      3720
     actctgaagg cttcacttat gtgccatcaa gaaagttgga ctgaagcact tccgctggta      3780
     cttttgggat tacggacagc atacaaagct gatattggcg catcagtagc tgagatggtg      3840
     tatggagaac ctttaagaat cccatctgaa ttcctttctg ctgccccgct tccagaccag      3900
     acagaattac cattattggt acagaggatt cgagatcagg tggctaagat tcggcaaaca      3960
     ccagctatac atcatggttc acaccctgtt tttgtacaca aggcactggc agactgcaca      4020
     catgtaatgc tgcgcactga ttctgcacgg acacctcttc aacctccata tacaggcccc      4080
     taccaagttt taaaacgagg tcaacacaca tttgagatcc ttcagaatgg gaagaacagt      4140
     aaagtgtcag tggaaagact gaaaccagct tgggtgatgc cagaaccaac gtcagatgac      4200
     cagacaaaca gcacagaagg acacggactt gaagaaacca taaattatca atcatacgac      4260
     gatacaattg gcctagaaga agttactccg gactcgcagg tgaccattcg acatgactca      4320
     acaccaacac caattgttcg tacaagggca ggaagagtga tcaagtttaa atacccctac      4380
     atcccaggtg ctccgcactt tggaaggggg gctgtgtggg aataagttaa ttcccagc        4438
//
ID   Gypsy-29_LMi-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-142
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 142 BP; 36 A; 14 C; 26 G; 65 T; 1 other;
     tgtgtttaaa tatactcttt ggtgtgaaag tgttcgstta gttatatttg ttccttgctt        60
     tagtctagtt ttcttcttgt ttatttaagt ggaagtttga ttttcttaat aaagaaaagt       120
     gtagatgaag aattcctcta ca                                                142
//
ID   Gypsy-29_MoPha-I repbase;    DNA;    INV; 4598 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4598
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1108-1108 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1073
FT                 /product="Gypsy-29_MoPha-I_1p"
FT                 /translation="MPLMRDNEMLVQPLEPQQVAVASTMAGQSVPLIHGAE
FT                 VNRVGMRMPEFTPNDPELWFSILDRSFHAAGITTDATKFGYALTALGPTYM
FT                 AEVRDVIMNPPGEGAYDTLKRELTKRLSLSQEHKTRRLLEHEEIGDRKPSQ
FT                 FLRHLRSLAGAAVGDSVLRTVWLSRLPSYLQPHLVARATDTLDQLADIADA
FT                 IAGAVRAPALQIAEAATPSVTRVIETDGAAAFQAKINLQLTQMRLSLQQEM
FT                 TEQIAALRRSIEAIGQPERGRGEFRGRQRSRSRSRGRGHASNNLCWYHWRF
FT                 GPDARRCDPPCAESSARGNAAADR"
FT   CDS           1040..4195
FT                 /product="Gypsy-29_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VVGTGKRGGRSVEATTEEGQLTRRLFVTDQDTKVRFL
FT                 VDTGADLCVYPRRMVRGPRPRSEYELSAANGTPIYTYGTETLTLNLGLRRT
FT                 FTWRFVVADVSRPIIGADFLSFYGLLVDLRNSRVVDGVTSMTVRGQCSRCA
FT                 MPSVKTVTGVTYYHELLARYPELTRPGGRPSETKHDTKHFIETTQGPPVVC
FT                 RPRRLAPERLVVAKREFQKLVELGVARPSKSNWSSPLHLVQKKGEEWRPCG
FT                 DYRALNARTVPDRYPVRHIHDFAQALQGRKIFTTIDLVRAYHQIPVAEADI
FT                 HKTAITTPFGLFEFPYMSFGLRNAAQTFQRFMDEILQGLDFCFTYIDDILV
FT                 ASTTEEEHLTHLKILFERLRKYGVVVNPAKCVFGRSEVEFLGHAVSEKGTR
FT                 PLPERVRAINEFPLPRTAKELRRYLGIINFYRRFLPRSAEIQAPLNDCLRE
FT                 NIKGKELISWDEQSRRAFEESKECVAQAVLLAHPRIGAELAVFTDASDRSI
FT                 GAVLQQRGRGGWEPLGFFSKKLSSTETKYSAFDRELLAVYSAVKYFKHMLE
FT                 ARTFTIFTDHKPLTFAFKQKTDKCSPRQFRYLDLIGQYTTDIRHIAGSENV
FT                 VADTLSRIDEVQDSIDYAELADSQNSDEELENFLQQHTGLKLERVNIPGTG
FT                 VAIFCDVTTQTPRPFLTKPFREKAFRSVHGLAHTGIKATVKAMSERYVWPS
FT                 IKKDCREWARTCVPCQRAKISRHVTAPLGTFNAPSRRFEHVHIDIIVLPIS
FT                 EGKRYCLTCVDRFTRWPEAFPLENQEAETVARAFYEGWICRFGAPLRVTTD
FT                 QGRQFESQLFRQLSQLLGTVQLRTAAYHPQANGMVERFHRQLKAAIRCQGS
FT                 SRWTQVLPTVLLGIRAAWKDDLRATAAELVYGETLRLPGQFLCQRAAEEPI
FT                 DDANFIRELRRRFDELRPVRGACHGERRPFVFKDLGTAEQVFVRHDGPKNI
FT                 LQPPYDGPFEVIKRNDKDFVIRVGDKSTTVTIDRLKPAYLFLENKTDQAGE
FT                 ARPRSDEGAKDERAAETERSLQRRATVRTRSGRRVHFPDRLQVGAS"
XX
SQ   Sequence 4598 BP; 1200 A; 1083 C; 1322 G; 993 T; 0 other;
     gtggtgaccc cgacgtgatc cgtcggcgcg agaaataaac gctcatttgc tttttctccg        60
     cgttctgttt tttatttccg tggacaaggt gtttgtgacg agtgttacaa gaacgttaag       120
     aagagatgcc tttgatgcgc gacaacgaaa tgttggtcca gccgctcgag ccacagcagg       180
     tagcggtagc atcgaccatg gccggtcagt cggtgccttt aattcacgga gcggaggtga       240
     acagagtcgg gatgcgaatg ccggagttca ctccaaacga ccctgaactc tggttcagca       300
     tattagaccg gagcttccat gctgccggaa taaccactga cgcgacgaag ttcggttatg       360
     cgcttaccgc attaggacca acttatatgg ctgaggtacg cgacgtaata atgaacccgc       420
     ccggggaagg cgcgtacgac actttgaagc gcgaattgac caagcgttta agcctgtcac       480
     aagaacacaa gacacgcagg ctgttggagc acgaggagat cggtgaccgt aaaccgtcgc       540
     aatttttacg gcacctccga agtctcgcgg gagccgcggt cggggacagc gtgctgcgaa       600
     ccgtatggct tagccgattg ccttcgtatt tgcagccaca tttggtggca agagcgaccg       660
     acaccctgga ccagctcgcg gacatcgcgg atgcgattgc gggagcggtc cgcgccccgg       720
     ccctccagat agcggaggct gcaacgccgt cggtgacgcg tgtgattgag acggatggcg       780
     cggccgcgtt tcaggcaaag atcaacctcc aactaacaca gatgaggttg tcgctgcagc       840
     aagagatgac ggaacagata gcggcccttc ggaggtccat cgaggctatc gggcagccgg       900
     agcgaggccg tggcgagttt cggggacggc agcgttcgcg gtcgcgttcg cgaggtcgag       960
     gtcatgccag caataatctg tgttggtacc attggagatt cgggccggat gctagacgtt      1020
     gtgatccgcc gtgcgctgag tcgtcggcac ggggaaacgc ggcggccgat cggtagaggc      1080
     gacaaccgag gagggccagt taacgcgtcg cctgtttgtg accgaccagg acacgaaggt      1140
     gagatttctg gtggatactg gagcggactt atgcgtgtat ccgcgccgga tggtgcgcgg      1200
     accgcgaccg cgatcggaat atgaactctc cgccgctaac ggaacgccga tttatacata      1260
     cgggacggag actttaacat tgaacctcgg gttgcgacgg acgttcacgt ggagatttgt      1320
     cgttgcagac gtgtcgcgac cgataattgg cgccgatttt ttatcatttt atggcttgtt      1380
     ggtagacctt cgaaacagcc gcgtggtaga cggagtaaca agcatgacgg tgcgtggaca      1440
     gtgttcgcga tgcgcgatgc cgagcgttaa gacagtgacc ggagttacat actaccacga      1500
     attattagcg cgatatcccg aattgacgcg accgggcggc cggccgagtg aaacgaagca      1560
     cgacacgaaa cattttatag aaacgacgca ggggccaccc gttgtgtgca gaccgcgaag      1620
     gcttgcaccg gaacgtttgg tggtcgcaaa gagagagttt cagaagctag tagagttagg      1680
     agtcgcgcga ccatcaaaaa gtaattggtc atctccatta cacctcgtac aaaaaaaagg      1740
     tgaagagtgg cgtccgtgcg gcgattatcg agcgctgaac gcgcgcacgg tacccgaccg      1800
     ttatcccgtg cggcatatac atgatttcgc acaggcgcta caaggccgga aaatatttac      1860
     aacaatagat ctcgtgcgag catatcacca gatcccggtc gccgaagcag acatacataa      1920
     aacggcaatc acgacaccgt ttgggctgtt tgagttccca tacatgtcgt tcgggttgag      1980
     aaacgccgcg caaacgttcc agcggtttat ggacgagatc cttcaaggct tagatttttg      2040
     ttttacgtat atcgacgaca ttttagtcgc gtcgactacg gaggaagagc acctgacgca      2100
     tttaaagata ttgtttgaac ggttgcgaaa atacggagtc gtcgtgaatc ccgcgaaatg      2160
     cgtgttcggc aggtcagaag tcgaatttct cggtcatgcg gtgtcagaga agggcactcg      2220
     tccgttgcca gagcgtgtaa gagcgatcaa cgaatttcca ttgccaagga cagcgaaaga      2280
     actcaggaga tatctgggaa taatcaattt ttacaggcga tttctgcctc gatccgccga      2340
     gattcaggct ccgttgaacg attgcctccg cgaaaatata aaaggcaagg aattgatatc      2400
     ctgggacgag caatcaagac gagcgttcga ggaatcaaag gagtgcgtgg cacaggcagt      2460
     attattagca catccgagaa tcggcgcgga actggcggta ttcacggacg cgtcggatcg      2520
     tagcatagga gccgttctcc agcagcgcgg ccgcggcggc tgggaaccgc tcgggttctt      2580
     ttcaaaaaaa ttaagctcaa cggaaacgaa atacagcgcg tttgacagag agttgttggc      2640
     cgtgtattca gccgtgaaat attttaagca tatgctggag gcgcgaacat ttacaatttt      2700
     caccgatcac aagccgttaa ctttcgcgtt caaacaaaag acggataaat gctcgccgcg      2760
     acagttccga tacctggatc taatcggaca atatactacg gacatccgac atatagcggg      2820
     atcagagaat gtagtggccg acacactctc aagaatcgac gaagttcaag actcaataga      2880
     ttacgcggag ttggcggatt ctcaaaattc ggacgaggaa ttggaaaatt ttttacagca      2940
     acacacgggt ctaaaattag agagagtcaa catcccagga acaggagttg caatattttg      3000
     cgatgtaacg actcaaacgc cacgaccatt cctgaccaaa ccttttcgcg agaaagcgtt      3060
     tcgcagcgtc cacgggttgg cgcacacggg aataaaagcg acggtcaagg ccatgtcgga      3120
     aagatatgtt tggccgtcga ttaaaaaaga ttgtcgagaa tgggcccgga catgcgtgcc      3180
     gtgtcagcgc gcgaagattt cgagacacgt gacggcgcca ctcgggacgt ttaacgcgcc      3240
     atcccgacgt ttcgaacacg tgcacattga cataattgta ttgccgattt cagaaggaaa      3300
     gcgatattgt ttgacctgcg tagatcgttt tacacggtgg ccggaagcct ttccactcga      3360
     gaatcaggag gcagagacgg tggctagagc gttctacgag ggctggatat gccgattcgg      3420
     ggcccctttg cgggtcacga cggaccaagg ccgacagttc gagtcacagc ttttccgtca      3480
     gctgagccag ttattaggaa cagtgcagct gaggacggca gcgtaccacc cccaggcaaa      3540
     cgggatggtg gagcgattcc atcgacagct gaaggcagcg atcaggtgcc agggaagcag      3600
     ccgatggacg caagtactgc cgacggtact tctgggcatt agggctgcct ggaaggatga      3660
     cttgagggcg acggcggctg agcttgtata cggggaaacg ctccggctcc cggggcagtt      3720
     cctgtgtcaa cgagcagctg aagaaccgat cgacgacgcg aatttcatca gggaattgcg      3780
     tcgtcggttc gacgagttac gcccggtccg cggggcgtgc cacggggaga ggcgcccgtt      3840
     cgtgttcaag gacctgggaa cagcagagca ggtctttgtc cggcatgatg ggccgaaaaa      3900
     catcctgcag ccaccgtacg acggcccgtt cgaagtcata aaaaggaatg acaaggattt      3960
     tgtcatacgc gttggtgata aatcaaccac agtcacgatt gaccgattaa agccagccta      4020
     tttatttcta gaaaacaaaa cagatcaagc aggagaagct aggccaagga gcgatgaagg      4080
     agccaaggac gagagagcgg ctgagaccga gcgatcgtta cagaggcgag cgacggtcag      4140
     aacgagatcg ggcaggagag tgcacttccc agatcggctg caagtaggcg cgagttaagg      4200
     aaacgatgta cgcgtaaaat gtagtaaaat ctttataaat ggttgtaaaa ttataaaaac      4260
     gaatcgtccg ctctgtagga aaatgattgt aaattacgac ttttgcttag tgtgatatct      4320
     taatttacca gacgaaggaa aaccggatat attatatata ggcaattcga gccatcactt      4380
     attcttattt acttacattc attcttatta attgttatta gatatattat attagtcaca      4440
     cgaccgcccg tactgcattt atattcatag tacattattt attatattgt attagtctcc      4500
     gagtattttg taattgacgc gggaaactca gaatgcgaaa tatactagca tagacgcacg      4560
     gaagacttta tcgtgctaca gcactggcag gggggtac                              4598
//
ID   Gypsy-29_MoPha-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-352
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1193-1193 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 352 BP; 108 A; 91 C; 87 G; 66 T; 0 other;
     tgtggcgatc gcgtcgccac acgcccgcaa accggcaggt cgttgcccga ttttaagcgc        60
     gcgaaagatt gacaaagccg cgtaaacgaa gaacaacgtt agttgaaatc gggcaacgaa       120
     ccataataag aaatcaagga cggaatccca ggtagggata agtgcggaga ggacgaaaaa       180
     acaaaaaggt tcacggcggg tcgtctagcg gataccgaac gattcggacc tacacgtcgc       240
     gtcagatgta ccgcgaattc gaataaagtt cttttctata ctcgcaaatc gtctgcctcg       300
     taatttcgcg gatcacactc ctgcacggac acacctatcc taacacgcta aa               352
//
ID   Gypsy-29_MSe-I repbase;    DNA;    INV; 5407 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5407
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 906-906 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5407 BP; 1816 A; 847 C; 1187 G; 1557 T; 0 other;
     cttcagaagt gggattactc ggagaatgga taaggacatc gaagctatag aagaagtttc        60
     aggtaatcgc agtgaaagca ggcggcggtt acggacaaga gaaaaaagta cgtcacggcg       120
     taaacgagtg cgtagtagtc gcagctgctc tcgcagtcga agtacttcac gaagtcgtgt       180
     gttacactgt gggagtcaca gtgttcgtaa aaaggagatc ctggtggaag cagaaaagag       240
     gcggttacgc gcactagaac acgagttacg tcaagaaaga gaaaaaatgt cccgaggttc       300
     tagatctcgc aaacgagata ctggacgtag ttgctgtcat aaccggtcca acgaccatag       360
     ccgcagccgc aatcgtagtt gccgctcgaa tgaacgtgaa gatgaaagag agagagcaaa       420
     acgtagacgg gactcccgtg agcatagtcg taggcgtgaa gtccgcactc ctgagaatga       480
     caggttatgt aattcttctt tttctttaaa agacgttatg aaattggtgc attctcttaa       540
     aaatgattac gaattaaggt cctttacaaa tgcttcacca aaaaatattg atcataaaaa       600
     tattctccca aattttgacc cgtcagcgaa aaatcaacgt atggacatat ggttgcgtaa       660
     agtaaatgaa tgtgctacgg tatacggctg ggatgataaa accacaatac attttgctat       720
     gcagaaactc cagggtttgg ctaaagtttg tacgaggggt taagtactat attgcatact       780
     tggtcagaat ggcaggataa gttactgagt gctttccctt gtgagcagaa ctatggtcaa       840
     aatcttgaag atatgcttaa aagaaaaagt aaaattaacg aaccaatcga agtctattat       900
     tacgaaaaac ttgcattaat aaatcagtgc gatattgagg aaaacgtgct gttgattgta       960
     taatacacgg aatatctgat agaaccatga agtctagtgc cctagcactc tgttgctctc      1020
     agccggatca acttctacaa tttttaatga gtaacaagca atatcagtct ttcgagtaca      1080
     gttataacag aaataattcc agaaatgatt taattcaaag accaattcaa ataaaattaa      1140
     tcgttctcct aacactatat attgttacaa ttgtagagaa ttaggtcatc ctttcttaca      1200
     atgcccgaaa cctctgataa gatgcacaaa atgcaataaa gtaggtcaca aagtagaaaa      1260
     ctgtttacaa gacacacagg ggaaaaatgc agttatcccc aaaacaatgt gtattacaaa      1320
     ttcaaatccg aattcaaaat tcttaaagca ggtattggtg aataacgtac tggtagaagg      1380
     atttattgat ttcgggagcg aagtaacatt aataaagcaa tcattaatta ctcgtctaaa      1440
     attgaatcat gatcatttac ctacagttat gaagggattt ggtagcgaat ctgtgtggtc      1500
     tttaggtagt ttgacagtac aaataacggt agatggagtt aacgcgtggg tatcttgtag      1560
     ggtagtcatg gactgcttat tggataaatc tatattgata ggtcagtcgt atacagaaca      1620
     gccacacatc attgtgtata aagattctga aaccttacag tttcgtatgt tagactcaga      1680
     aatcccatgg attgatccta agacaaatgc tttagagctt agaaaaatta agattaccgc      1740
     agatgtagag ctttatgggc ctgcttcagt aaaggctcaa ttagatgaaa atttcagtgg      1800
     ttgtctgttg ttaaataata agattattgg tgaaccgaat cgggaagtca ttgtgtcagg      1860
     aggagtgtat aatgcgcagt atggccgact agacattgta ctttttccgt gtattgttcc      1920
     ttgtaggata caacataatt ttgttgttag cagaggggaa aaggtagaat ttattcgtag      1980
     aatcgtggta caaccaccag ggttagcaga atcacatgaa ttagaaataa aagaacgaac      2040
     ctttaacgaa aaggatgtta agttgagtaa ctttgtaaca aaggccgata aacaacggct      2100
     attggctata ctcgaaaaat ataaacattg ttttgcctct aatttaaaag atttgggttg      2160
     cactgatgta acgcagatga ctattgaatt gaacaaccaa cgtcctgttg tctatagacc      2220
     ttacaggttg tcgtatcatg aacgtgacaa agtgcaatca atgataggtg aaatgttaga      2280
     tgctggtatt attagagagt ccacatccga gtatgcaagt cccataattt tagtaaaaaa      2340
     gaaggatgga aactatcgta tgtgtgtgga ctataggatg ttgaactcta ttacagtaaa      2400
     agaaaggtat ccgatgccga ttattgaaga tgagatagct agattggctg gtcaagaata      2460
     ttttattaca cttgatttgg cgtccggtta ttatcaggta ccgatatcag aacagtgcaa      2520
     acatttaact gcatttgtta ctcctgatgg gttttatgaa ttcaaccgca tgccatttgg      2580
     attggcaaat gcgccagtta ttttccaacg aatgatcaat aaagttttgg ggtcggctcg      2640
     tttcactaag gcagcagcat acatggacga tgttttaatt tttggtagaa cttccactga      2700
     atgtttagat agacttgaag atattttaaa gttgttagaa gaagcacatc ttacactaaa      2760
     tttgtcgaag tgtgactttt tacaaaatag tattaactac cttggatatg agatcagtgc      2820
     gtcgggatta cgaccaggga caaataaaat agaatccgtg gtaaactttc catgtccaac      2880
     aaatgttcat gggattagac agtttcttgg tttggctagt tattttagaa aatttattaa      2940
     gaactttgcc caaatagctt caccattaat gaaattatta aggaaaaatg tcgaatggga      3000
     gtggggtcca gaacaacaag atgcatttag catattaaaa tcaaaactaa tacagagacc      3060
     aattttggct atttatgatc atgaagcaga aaccgagtta cataccgatg ctagcaaaga      3120
     tggcaccggt ggtatgcttt tacaacgatc gaaaaatgat gatgcgttta aagtcgtagc      3180
     ttattgtagc cggcgaacat ctccggaaga aaagtattat cattcatatg aattagagac      3240
     tttggctgtc attcgttcat tggagaagtt tagggttttt ttgctaggaa aggagttcaa      3300
     aattgtcact gactgtagcg ctctccgctc tactttcatg aaacgcgatc tcgtacccag      3360
     gatagcacga tggtggttac ttttgcaaga atttaactgt ttgattgagt acagaccagg      3420
     gagtaaaatg tcacatgtcg acgcgttatc acgcaatccc gttatcgata atattgatag      3480
     tgatagtatg aggcaacata atcaagttat gtcaattagt aatgacgact ggttgcacac      3540
     ccttcaactt ggtgaccctg aattagaacg cataaagcag attgtagaaa aagatttaga      3600
     ttcgaaaaag cttgactata tcaagaataa ttatgttgtg cgaaataata agttatatag      3660
     gtgcatcaat ggtgataaaa acgatattcg ttgggtagtt ccgaagggtg cgaggtggca      3720
     aatatgtagg atgaatcacg acgatattgg gcatctagga ttacaaaaaa cattaaaaag      3780
     aataaaaaca aattattggt tttcgaaaat gtcacgattc ataaaaaaat atgtaactgc      3840
     ttgtcttgac tgtgcgtatg ctaagaaaac ttcaactagt aatgaaggtt tattacatcc      3900
     aataactaag gtgaaatcac cattccatac cttgcatatc gaccaccttg gtcctttcgt      3960
     gagatcaaaa cgaggacatt cttatctctt agttgtcgta gacgcgttta ctaaatttgt      4020
     ctttattaaa ccagttcgaa atacaaacgc acaaaatgtg attcgtattt tagacgatat      4080
     attttataca ttcagagtac ctgatcgctt aataagtgat cgtggaagtt gctttacttc      4140
     caactctttt aaaagatatt gtcacgataa gggtgtgaaa cacatattaa atgcagtctc      4200
     tagtccaaaa tcgaacggtc aggtagaaag atacaatagg acgattctaa attcgttaaa      4260
     ggcgcagaca ttaaataatg atgaaaggga ttgggatagc caggtaggga aaatacaatg      4320
     gggacttaat aatactgttc agaagactat cggcaggaag ccggttgaag tcatgttcgg      4380
     tacatttatg aatggtgaaa ttcacgctgg gctaaatgag attttagagg agttacgaga      4440
     ggatatagat gttgacacaa ttcataatca ggttaaacaa aatatagata aggaacaagt      4500
     gaaacagaaa gaacgttacg accgcaataa acgcccggct aaggtataca atgaaggaga      4560
     cttggttaaa attacaaaaa taacatataa taacgacgga aaaagtaaaa aacttcttcc      4620
     agcatatata ggacctttcc gtgtgatcaa agctctaggt caggacagat ataaagtagc      4680
     acctattcct ggttttagtg gtaatacaat caaaagaaca actactgtcg cagcagagcg      4740
     aatgctgcct tgggtgcatg tagccgcgtt acaattacat gataaatcag attccagtga      4800
     aaattctgat attgacgaat caaatgatgt agaatagaat aaatttcaat gtatagttat      4860
     actacagaac gattgattgt tacagatgaa ctgatgttac tgatgaagtt gatcgatggt      4920
     tggagagtaa cattggtgcc ttgaggtatt gtcactccga tcaggcatga gaagtgattg      4980
     gttcatgacc tgatggaata acaaggagtt ccaagcgaga attgattggt tcgcttgaaa      5040
     ttatgttggc tctgatcagg cttgagaatt gattggttca agacctgata gagcaaaagt      5100
     ctggcgagaa ttgattggtt cgcctaaagt agcgctctaa tcagacatga gaagtgattg      5160
     gttcatggtc tgatagagta ggtgatagta aataattaat tattcgaagg atcatggttt      5220
     atgaaatgtg ctgaagttat tttttttttt ttggggtgac aattgattgg tttgccaaaa      5280
     tcatgaatgt tgtatagtaa gatcagatga atgtaattag ggtgtttttg tctcattagg      5340
     cctagtgtag ggtattcata ctaaagtata cgtgtatggg gacatacaca ttgtcaggac      5400
     ggtcgag                                                                5407
//
ID   Gypsy-29_MSe-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 955-955 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 291 BP; 89 A; 27 C; 68 G; 107 T; 0 other;
     tgtagggttt tagaaatatt taaataaaag taaggtattt tcacaaaaat aacaagttat        60
     tgtttgacag cactacttgt tggagaggga atattgtatt taaatgaatg ttcgtctgcc       120
     aaaggggcag tttttgttgg tcgcttgtaa ggtgattatg ctggtctgag ttttctaaat       180
     aaattgtgac tatttaacaa gtgaaagtgt ggtgttttta ttcatttggt gacgagtgta       240
     taaaagtgaa tgtgtgacaa tcagtgagtg caacaagtag tttttcttac a                291
//
ID   Gypsy-29_OrIn-I repbase;    DNA;    INV; 6110 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-6110
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1570-1570 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           410..1762
FT                 /product="Gypsy-29_OrIn-I_1p"
FT                 /note="PHD finger at the N-terminus."
FT                 /translation="MDAVCAKCQKGCKKSEDSTDCAQCAKVYHFECDNLQS
FT                 REVFIKKNQEARAAWKCSGCKLSPQTLQSQIAAISGNLSIVQKMNVELDKE
FT                 NKRLAKEIKDLKAAMAEQHKLQEAFTRNAQLLAEQAKATEELNQLKSQSGQ
FT                 SLXQTSTYSGSLSINPPGDRKFPRHLEEVVKSLPVLQTDDPWKIIEFMGKL
FT                 HDVNSTCSNFFGEIFVRLAVSQPNDFLRQLVSEYGSRIGFPEVKDKIIGQF
FT                 IDERTRTFLLSKKVLRNQRYEEAFRSFARDILKFGEILGSYSSEDVIGIIL
FT                 SGVNLATRARFQFLEKPKTLAALDKLILEVEKLEVASKMYERKPSKPRYNS
FT                 DRNSQRSSNDDKNSPPAAGPIGKDFNNRRFFNKKFDNREPRNQHFNKVENQ
FT                 DKDFGSNRASQKTQKVQQVSEGNEKLTEKKEQVSTANYKSDKHDKKNDTPN
FT                 KKQTKN"
FT   CDS           1735..4908
FT                 /product="Gypsy-29_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YPKQKTNKKLKPRIYGLASKNSQPLYLKITLNDYPTE
FT                 ALLDTGATVSCIQLSVVEAISKFRRKLTIRDCTEKITVGNSESVEIKQKVS
FT                 VLLKMDNFSWKHEFWVVPQLSVGVILGLDFIEATNMSIDPSKKIVNFNFLP
FT                 HLKIKLFSESEIMEAKKMTNIVKHYSLTESFQDRFPDVLTKKLGCAKNMVY
FT                 DIRLKDGATLDSRGSRIAYRSGPERYAVLRSKVEGLLAEGVIEPVTSFFTS
FT                 PCFLVPKKTQEGKSRDFRLVVDYRTLNSKILYIAQQTPTIDEAFIHLRQGK
FT                 IFSLFDLNSAYNQIPLSLESKRLTAFQVPWGTYAYRRVPFGLATGGQILQI
FT                 LMEKIFGDLVYKFVFFYFDDLVVYSNSYEQHIEHLQVVFSRLRTAGLTVNP
FT                 EKLQLARSTIEFLGHVIQHNRISIDPSRIEALLKIPRPVTLHDLEAFLGAV
FT                 NFFSRFIPDFGKISSPLNDLRKGWRTMGKSKVSNKALEWGQESQTAWENLR
FT                 KIITSPPVLRTPDFSKRFALYTDGSTKGVSACLAQAVEGVMAPIAFASRKL
FT                 KGPEARYSAFDLEALAVSFGLKKFHIYLEAEEFDLYTDHSALTNMVDMQRN
FT                 NGRQARFAMQLMSYRFKAHHVPGKSNTIADYLSRYPAGEVPQKEQSVSILK
FT                 SIPELFSNLGLKQSEDQELKIVIDKIQEGHQVPNYSIKNSILYYQVRKKTF
FT                 RAVVPESLKSLVFEYFHASLLGSHLGISRTINKIRDLFYFKNLKEFVVKNV
FT                 NSCTACARTKVQQRLPAGNMSSYVSARPGERIFIDLAGPLPSSNGYRHILV
FT                 AIDDFSRFVVLIPLRRPTAETIVSKLQERVFSNFGYWETVVSDNGSVFHSN
FT                 VYKDFLLTHGMHAQYLVRFYPNPSKAERILRDVKTALMAFYGEKQSKWSTG
FT                 LNSIQIGLNSARNESTKYTPAQLFLGRRLNTPINLHWEIKYDEDGGNPQEL
FT                 WERAFQNMHHAMKMSKKYYDKKHAKQEFEVGDVVYLKAYNLSNASRNFQAK
FT                 MAYRFNGPYDVIEKLSPVTYRVRHQDDDSDVKKAHVSQLKPFRVTRQSSRR
FT                 D"
XX
SQ   Sequence 6110 BP; 1897 A; 1091 C; 1276 G; 1843 T; 3 other;
     tttggtagca gagcgtggtt ttttgatttt tttttggtgt tggaaaaaag gttttaagtt        60
     ttttttaaat ttttgtaaat aatttttgta cataataagg tgtaagttag atttaagtgt       120
     ataagtgtat ttatttttat ttttttataa ttttatttaa gtattttacg aagtagtaca       180
     agaagtccat tgattttcgt aaattttatt tgagaaatat ctttagtttc atgtccaagg       240
     ccgagttcgc ccaagaggta ggcgataagg ataggattat taggattatc gttttccgtc       300
     ttgaattttc aagataaaat tttaaatttt gggaaataaa attttacaat tttttttctt       360
     ttttcgtttc gctttttatt ttattaccgt taaaaaaaaa aaaaaaaaaa tggacgctgt       420
     ttgcgcgaag tgccaaaaag ggtgcaaaaa gtcggaagat tcgaccgact gcgctcagtg       480
     cgcaaaagtg taccattttg agtgcgacaa ccttcagtcg cgagaggttt ttattaaaaa       540
     aaaccaagag gctagagcgg cctggaagtg ctctggatgc aaattgtcgc ctcagactct       600
     tcagtcgcag atagccgcaa tttccggaaa tttgtccatt gttcagaaaa tgaacgtgga       660
     gctcgataaa gaaaacaaac ggttagccaa agagatcaag gatttaaagg cggccatggc       720
     cgaacagcac aagttgcaag aagcgtttac gcgtaatgcg cagcttctgg ccgaacaggc       780
     gaaggcaacg gaagagctaa atcagttgaa aagccagtca ggccaatctt tawcacaaac       840
     ttcaacttat tctgggtcgc tttcgattaa tccccctggg gacagaaaat ttccccgtca       900
     tttggaagag gtagtaaaaa gcttaccagt actccaaact gacgatccgt ggaaaattat       960
     tgaattcatg ggaaagctcc atgatgtcaa ttcgacttgt agtaattttt ttggtgaaat      1020
     tttcgtgaga ttagccgttt ctcagccaaa cgacttctta cgtcaactag tttcggaata      1080
     cgggagtaga ataggttttc ccgaagtaaa agacaaaatc attggacagt ttattgacga      1140
     aagaactcgt acttttctgc tgtcaaaaaa ggtcttacga aatcaaagat acgaggaagc      1200
     tttcagatct tttgccagag acattctcaa gtttggagaa attttaggct cctattcgtc      1260
     ggaggatgtc attggtatta tcttgtccgg ggtgaatttg gccaccaggg cgcgttttca      1320
     atttttagaa aaaccaaaaa cgttggcagc ccttgacaag ttaattttgg aagttgaaaa      1380
     actcgaggta gcttccaaaa tgtatgaaag aaagccctct aaaccaagat ataatagtga      1440
     tcgtaactcc caaagatcgt cgaatgacga caaaaactcg cccccagctg ctggaccaat      1500
     tgggaaagat tttaataatc gaagattttt taataaaaag ttcgataata gggaaccccg      1560
     gaaccaacat tttaataaag tcgaaaatca agataaagat tttggttcga accgggcctc      1620
     tcagaagacc caaaaggtcc aacaggtttc tgaagggaac gaaaaactta ccgaaaaaaa      1680
     agagcaagtc agtacagcaa attacaaatc tgacaagcat gataaaaaaa atgatacccc      1740
     aaacaaaaaa caaacaaaaa actaaaacct cggatctatg gactggcttc aaaaaatagt      1800
     cagccacttt accttaagat cactctaaat gattatccaa cagaggctct gctggacaca      1860
     ggggcaacag tctcatgtat ccagctgtcc gtggtggaag cgatttcaaa attcaggcga      1920
     aaattgacca tccgagactg caccgagaaa attacagtcg gtaattctga atctgtggag      1980
     attaaacaga aggtctcggt gctgttgaag atggacaatt tttcgtggaa gcatgaattt      2040
     tgggtggtac cgcaactgtc agtaggagtg attttaggtt tagacttcat tgaagccaca      2100
     aacatgtcta tagatccgag caaaaaaata gttaatttta actttttacc ccatttaaag      2160
     atcaagttat tttcagagtc agaaataatg gaagcaaaaa agatgacgaa tatcgttaag      2220
     cattactcat taactgagag ctttcaagat cggtttcccg atgtgcttac caaraagtta      2280
     ggatgtgcta aaaatatggt ttatgatatt agattaaagg atggtgcgac gctggattct      2340
     cgcggatctc gaatagcata tcgttcaggg cccgaacggt atgctgtcct tagatcaaaa      2400
     gtcgagggat tgctagcaga aggcgttatt gagcctgtca catcattttt cacgtcacct      2460
     tgttttttgg tcccgaaaaa gacgcaggag ggaaagtcgc gcgatttccg cctcgtcgtt      2520
     gactatagga ctttaaattc taaaatttta tacatagcac aacaaacgcc gacaattgat      2580
     gaagctttta ttcatttgag gcaaggaaaa atttttagcc tttttgactt gaacagcgca      2640
     tacaatcaga ttcccttaag tctggaatcg aaaagattga ctgcatttca ggttccatgg      2700
     gggacctatg cgtatcgtag agtcccattt ggtcttgcaa ctggaggtca aattttacaa      2760
     atcctaatgg aaaaaatttt tggagacctc gtttataaat tcgtattctt ttattttgac      2820
     gacctcgtcg tatattctaa ttcatatgag caacatatag aacatttgca ggtggttttc      2880
     tccaggctaa ggacagctgg actgacggtc aatccagaaa agctacaact agcgagatca      2940
     acgattgagt ttttaggaca tgtgatccag cacaaccgaa tctcaatcga cccctcgaga      3000
     attgaagctt tgttaaaaat acctcgtccg gtcacattgc atgatctcga ggcgttttta      3060
     ggtgcggtga attttttttc ccgatttatc ccagattttg gaaagatttc cagtccatta      3120
     aatgacctca ggaaagggtg gaggacaatg ggaaaatcaa aagtttccaa taaagccctt      3180
     gagtggggcc aggagagcca aacggcttgg gaaaatctgc gtaaaataat tacgagccct      3240
     ccggtgttga ggaccccgga tttctcgaaa cgttttgcgt tgtataccga cggatcgacg      3300
     aaaggagtct cagcgtgctt ggcacaggcc gtcgaaggcg taatggctcc gatagctttt      3360
     gcatctcgga aattaaaagg tccggaggct cggtattcag ctttcgattt ggaagcgtta      3420
     gcagtcagtt ttggactcaa aaaatttcat atatatttgg aagcggaaga gtttgatctg      3480
     tataccgacc atagtgcgtt gactaacatg gtggacatgc agcgcaataa tgggcggcaa      3540
     gcccgctttg caatgcaact tatgtcctac cgattcaaag cgcatcatgt gccagggaag      3600
     tcgaatacga tagcggayta tttgtcccgg tatccggctg gcgaagttcc gcagaaggaa      3660
     caatcagttt caattctgaa gtccattcca gaactctttt cgaatcttgg tcttaaacag      3720
     tcagaggacc aagaattaaa aatagtaatc gataaaattc aagagggtca tcaagtccct      3780
     aattatagca ttaaaaattc tattctatat tatcaggtca gaaaaaaaac attcagggcg      3840
     gtagttcctg aatccttgaa atcattagtt tttgaatatt ttcatgcgtc gctgttaggg      3900
     tcgcatttag gaatctcacg aacaataaat aaaataagag atttatttta ttttaaaaat      3960
     ttaaaagaat ttgtggtaaa aaacgtaaat tcgtgtacgg cttgtgcgag gacaaaggtc      4020
     caacagcggt tgcctgctgg caacatgtcg agttacgtct cagctcgtcc aggagaaaga      4080
     atattcattg atttagcggg tcccttgccg agtagcaatg gataccgtca cattttagtc      4140
     gctatcgacg acttttcacg ttttgtcgtt ttgattccac ttagaaggcc gacggccgaa      4200
     actattgtct cgaagttgca ggaaagggtt tttagtaact ttggttactg ggaaactgtg      4260
     gtttctgaca acggttctgt ctttcattct aatgtttaca aagattttct actcacgcat      4320
     ggaatgcatg ctcaatattt ggttagattt tatcccaatc cgagcaaagc ggaaaggatt      4380
     ttacgcgatg ttaaaacggc tttaatggca ttctacggtg aaaaacagtc taagtggtct      4440
     acaggcttaa attcaattca aattggctta aattcggctc gtaatgagtc gacaaaatat      4500
     accccggctc aattgtttct tgggcggcgg ttaaacacac caatcaacct tcattgggag      4560
     attaaatatg atgaagatgg tggcaatccc caggaattgt gggaaagggc attccaaaac      4620
     atgcatcatg caatgaaaat gtcaaagaaa tattatgaca agaagcatgc taagcaggag      4680
     ttcgaagtag gcgatgtcgt atacttgaag gcctataatt tgtctaacgc aagcaggaat      4740
     tttcaggcga aaatggcgta tagatttaat ggtccgtatg acgtcattga aaagttgtca      4800
     cctgtgacgt atagagtccg tcatcaggat gacgattcag atgtaaaaaa agctcatgtt      4860
     tcgcagctca agccatttag agttacgcgg caaagctcaa ggagggattg atctttgtcg      4920
     gcgagatcaa tggcaatttc tgttaattgt ttaaatcaat gttggtatta aggaatgttt      4980
     ccaaatttaa aagaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5040
     aaaaaaaaaa aaaaaaaaag tcttttggtc taagctggtt agataatttt aatttgttta      5100
     tagaaatatt ttaaagggaa cgttttataa tccctgttta acgacgaata gatagcggcg      5160
     gtgtctctcg tctattcctc tttctttcta tctaaggtac agtaaaaggt ttattgttct      5220
     tatagaaaca tttttttttt aaatcaaatc tttattcatg tataaataaa tttgaagttc      5280
     aacattaaaa tgtcttttaa tatacattaa atattatgtt caatagttta aaacaaatta      5340
     tctttctttc gattgttatc ttttgtaaac aaatcgggcg gtacaagtta atccgcttac      5400
     acgtcaatta agtatttaac ttttgtctaa ttttttttta tttttcaatt tttttgtcat      5460
     aatttccggc ttattcttct gtacctttga acaagttgtt tcaaattcaa ttttttttat      5520
     ttttacgcct aatgagcact aattacccga tacttgatat caacgtttta ttcgacataa      5580
     tcctcgaaag ttgtttactt tttcacaata taaattttta aattttctca actttttacg      5640
     ggatattttt tttttaaatg tatttctcaa ttcttgtagc aaaatttttc agcattaaat      5700
     acttacaaat aataaatttt cattgtatag aagcgcttaa aggtctacct atgtttgtct      5760
     cattttcatg ctttaccgtt tatcactccc cttaaaatcg tcgctattat agactgatga      5820
     gggatctgca tcgacgacta ctgaggctct ttttgacgat cgatggagag gggccatcta      5880
     cggagtccag ggccatcagt acgtcccccg ccctgagggt ttgtcatggg ggcgactggc      5940
     gtcgttagac gttccgggcg tcacccgctt tgacacgtgc cgtggaggcg actggcggcg      6000
     taggacgttc tggtcgtctc tactttggcg cattttgagt ctacagttat gtccaccgca      6060
     gggagtttat ttttccgtcg accggtggcc gactctttaa cggggggcag                 6110
//
ID   Gypsy-29_OrIn-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-327
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1536-1536 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 327 BP; 79 A; 97 C; 51 G; 100 T; 0 other;
     tgtcaccccc cggtgacaac ccaagccagg gagtggggac atcgtaggtc ctctggactc        60
     acggccccca ccttaactag gaagagacga aacgccgcac cgtcgacacc tcgcataaat       120
     tactctttct tactttaaag ttgcttacca ggtagaccca ataaaagacc attattgttt       180
     tatatattta attgctcgag tctaataaat cccgtaaatt ggtatttcgt tattttttgt       240
     tcacttacct ctcctaacta ccctttaaac cttacccttt tctcccttca cctatgtccc       300
     gtgtttctcc ctccgattcc cgtgaca                                           327
//
ID   Gypsy-29_SI-I repbase;    DNA;    INV; 6889 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 19.02, Created)
DT   21-APR-2014 (Rel. 19.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_SI_;
KW   Gypsy-29_SI-LTR; Gypsy-29_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-6889
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 448-448 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4217-4693] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           611..1879
FT                 /product="Gypsy-29_SI-I_1p"
FT                 /translation="MTTSEGKSRYGWIYKLSEDRLREELARRGQLSGGDLA
FT                 ALHDRLLRYEMEQPIETASLHDAIEMPAVQRLPPPSPPMRPDSPGDLAMGN
FT                 LRLGEDDDAIPAHASSSREMLPLRGGGGRPPPPGGPQHSVTEIFNILRKWN
FT                 LAFSGSRGSDAEAFLVRIEEGRALLPVSDDDLFRCLPFFLSGTAVHWFRNR
FT                 RAEWRSWDDFVVAWRARFGDPDFQFALRDEILRRTQGEHETVADYLTCMQA
FT                 LFDRLSPPWTLEEQLNYAHRNMLPRLQIAIRRDEFRSFASLELLASRIEVS
FT                 HDAATRYRAPPAPERSLFPELAYRSPKKAARAPAVVAAGVATASPGGRKKS
FT                 AKPPSTAAAAPTAASTSTASADPATASPRTSTAKCWNCDKIGHIARECGEN
FT                 RRMYCYRCGKTGVTVKSCATCAGNEPASR"
FT   CDS           2606..5083
FT                 /product="Gypsy-29_SI-I_2p"
FT                 /translation="MLEAGIIEPSFSEWSNPIVMVKKATGKYRFCLDFRKI
FT                 NSISKKDAYPLPNMNGILDKLRPAHYISTIDLSQAYFQIPLAKESREITAF
FT                 SVPGKGLYHFTRMPYGLTGAPATFQRLLDKLIGPEMEPHAFAYLDDIVVVT
FT                 STFEEHLEWLQRVLDKIAAAGLTINPGKCEFCRSHVRYLGFVVQREGLTID
FT                 PDKVQPILEYPAPRNLKQLRRFLGMSSWYRRFIPQFATLSEPLTRLLRKNQ
FT                 RWEWGGEQEAAFEQIRARLTSAPTLACPDFSIPFVLQTDASSVGLGAVLTQ
FT                 TVDEVEHVIAFASRALSDPEKKYSVTEQECLAVVWAIQKFRPYLEGYKFTV
FT                 ITDHSSLRWLHHLKNPTGRLARWALELLEYDYEVVHRKGAQHHVPDALSRM
FT                 FEGETEPAVVAVADAIDPPNTQDQWYLKKFREVGEAKKNCTDWKIVDGQLY
FT                 FLKPRPVTSAIVPDLDRWKLVLPRELREEALRESHDDPQSGHLGVDKTHYR
FT                 LSIAYYWPNAFRDVAGYVKRCEICQRTKVEQASPVGLMGRRVIEAPWTVIA
FT                 ADIMGPLPRSKNGYSYLLVIQDLFTKWVECQALRTANGKKIREALEDLVLS
FT                 RWGTPKFLLTDNGTEFVNQTLRAFAQDFGITHTTVPPYHPQANPVERVNRV
FT                 LKTMIIAFLDRDHRDWDLHIHDFRFAYNTAHHSSIGTSPAFLNLGRELEPI
FT                 NSLRRRCRNATEVASGEAGDWSRRMQDLRALHAWVSENLEQAYQKQAKYYN
FT                 QHRRDKVFGVGELVLKRQHVLSSAAQNIAAKLSPKFHGPFRVSKALSPVVY
FT                 ELTELDGTAVGKVHVKDLKAYNGA"
XX
SQ   Sequence 6889 BP; 1388 A; 1836 C; 2092 G; 1565 T; 8 other;
     aatttggcgc ccaacgtggg gcccagaaac gttggaaaat aaaaattctg caattatcga        60
     aattacgggc gttgagagcg agagaacttc tgcatgtttt cgtattgatt tattgcattt       120
     tgaaattatt ttctatatgt gtgatttatg tctctctggt gaattttatt gttgtgattt       180
     ctgttgttgc taatcatttt cctttcagca gtgtgcatgc tatttttcgc gtactgattt       240
     tgtgaattcg agtggtcctg gaatttcgag tgttttccgc gtgaacggtt tcgcgcgacg       300
     tcgcttgttg ccgtgcgctg tgcgtgcgcg tcgaccttgc ggctgtctct ctcgcgctcg       360
     cgtacgcgtt cgcgcgacga cgttgtttac gttttcgagt gcctctctgt gattgccttc       420
     accgttctag cttactgaga gttttcgcgc ttgggctggc ggaatttgga aagtattcgt       480
     gtcaaaatat tattcgttct gaaccttgcg gatcgttgtg agcgaccgta tcttgacttt       540
     cggtcgcccc gtccttgcgg gtctctttcg ttcgctgtag cgtcgtgcgg tttcgcggca       600
     ttctttcgcg atgacaactt cggagggaaa atcgcgttac gggtggattt ataagttatc       660
     ggaggatcgc ttgcgggagg aattggcgcg tcgtggacag ctgagcggcg gggatctcgc       720
     ggcattgcac gaccgcctat tgcgttacga gatggaacag ccgatcgaga ccgcgtcgtt       780
     gcacgacgct atcgagatgc cggccgtcca acggctaccc ccgccctctc cgccgatgcg       840
     accggacagt ccgggtgacc tcgcgatggg caacctccgc ctgggcgagg acgacgacgc       900
     gattcccgcg cacgcttcct cgagtcgtga gatgctgccg cttcgcgggg gcggaggacg       960
     gcctccacct cccggcggac cgcagcattc ggttaccgag atttttaaca ttttgcgaaa      1020
     atggaacttg gcgttctcgg gttctcgcgg tagcgacgcg gaagcatttt tagtgcgtat      1080
     tgaggagggt cgcgcgttgc tgcccgtttc ggacgacgat cttttccgtt gcctgccgtt      1140
     ctttttatcg gggacggcgg tacattggtt ccgcaaccga cgcgcggaat ggcgatcgtg      1200
     ggacgacttc gtggtggcgt ggcgcgcgcg attcggcgat ccggattttc aattcgcgtt      1260
     gcgcgacgag attctccgtc gcacgcaggg ggagcacgag accgtcgccg attatttgac      1320
     gtgtatgcag gcgttattcg atcgactaag cccgccgtgg actctcgaag agcaattaaa      1380
     ttacgcgcat cggaatatgt tgccgcgatt acagatagcg attcgccgag acgaatttag      1440
     aagtttcgcg tcattggaat tattggcgtc gcgaattgag gtgagccacg atgctgccac      1500
     ccgctatcgc gctccacccg cgccggagcg atctcttttt ccggaattgg cctatcgctc      1560
     gccgaagaag gccgcgcgcg cgcctgcggt cgtcgcagcg ggagtcgcga ctgcgagtcc      1620
     cggggggcgt aagaaatccg cgaagccacc aagcaccgcc gccgccgcgc cgacggccgc      1680
     gtcgacgagt accgcctccg cagaccccgc aaccgcttcc ccgcgtacca gcaccgctaa      1740
     atgctggaac tgcgataaaa tcggtcacat tgcgcgcgaa tgcggcgaga accggcggat      1800
     gtattgttac cgttgcggta aaaccggcgt gaccgtgaag tcgtgtgcca cgtgcgcggg      1860
     aaacgagccg gcgagtcgct agatcgggtc tgcgcgactc cagtagaatc ggcagaggcc      1920
     cgatcaccaa ttaactaagc gatttcgaac attcgtacgg tgcgtttccg atcgaggggc      1980
     gcccacccct ccgatatttt cgcgttctcg tggagggaca ctcgctcctc gcgctggttg      2040
     actccgggtc gagccgcacg attttcgggc aggacgggat ccggataata cgacggctgg      2100
     ggattccgac gctccgcgac cgmggctcgc ggatacgaac cgcgaacggt cagatcgccg      2160
     cgatcgcgga ggaagccgac gtgacggtgg agttggaggg gaggcgccac gctctctccg      2220
     tgtgcctctt gccgaattta gtcgtcccgt gcgtagcagg tgtagatttt ctgtgcgttt      2280
     tcggcattag tctcgatttc acttccgtgg gtggactttt gcggacgagc ctgatcgcaa      2340
     atatccgttc gagcttggcg ggaaaaatat tacgtccgcg atcgccggcg ttccggccgg      2400
     cggcgggctt tcggagttga catcggatca ggaacggcgt ctagaggaat ttttagaaaa      2460
     acacgtacca aaacaagtcg cgaatccggg tgttactaag cttaccgagc atcgcattga      2520
     cgtgggacaa caccggcccg tgaaacaaag gtgttattta gtttcgccga aggttcagga      2580
     cgcgatacgc gaggaagtca acaagatgtt agaagcggga attatagaac cgtcgtttag      2640
     cgagtggtcg aatcccattg tgatggtgaa gaaggccacg ggcaaatatc ggttttgcct      2700
     tgactttcgg aaaataaaca gcatttcgaa gaaggacgcg tacccgctac caaatatgaa      2760
     cggtattctc gataagttgc gacccgccca ttacatctca acgatcgatt tgagccaagc      2820
     gtattttcag attcctttag cgaaggagag tagggaaatt accgcgttta gcgtaccggg      2880
     taaagggttg tatcacttca ctcgcatgcc gtacggattg acgggggcgc ccgcgacttt      2940
     tcaacgactc ctcgacaaac tgatcggtcc ggagatggaa ccgcatgcgt tcgcgtatct      3000
     ggacgacatc gtcgtggtca cgtccacgtt cgaggaacat ttagagtggc tccaacgggt      3060
     cttggataaa atcgccgcag ccggtctcac tatcaatccg gggaaatgtg aattttgtcg      3120
     ctcacacgtt cgttacctcg gcttcgtcgt gcagagggag gggctaacaa ttgaccccga      3180
     taaagtgcaa ccgatcttgg agtatccggc tccgcgcaat ctaaagcaat tacgccgttt      3240
     tctcgggatg tcgtcctggt accgtcgctt catcccgcaa ttcgcgacgc tcagcgaacc      3300
     gctcacccga ttacttagga aaaaccagcg gtgggagtgg gggggcgagc aggaggcggc      3360
     ctttgaacaa attcgcgcgc gcttaacgtc cgctccgacg ctggcatgcc ctgatttttc      3420
     gattccgttt gtgttacaaa cggacgcgag ctccgtcgga ttgggggctg ttctgacaca      3480
     gacagtggac gaagtcgaac acgttatcgc gttcgcgagt cgagccttgt cggacccgga      3540
     gaaaaagtat tccgtaactg aacaagagtg tctggcagtc gtgtgggcca tacaaaaatt      3600
     taggccgtac ctcgaaggtt acaaatttac tgtgataacc gatcatagta gtttacgctg      3660
     gcttcaccat ctcaagaacc cgacgggtcg actagcgcgg tgggcgctgg agttgctcga      3720
     gtacgactat gaggttgtac atcgtaaggg cgcgcagcac catgttccgg acgccttatc      3780
     gcgaatgttc gagggggaaa ccgagcccgc cgtggtcgcg gtcgccgacg cgattgatcc      3840
     gccgaacacg caggaccagt ggtatcttaa aaaatttcgc gaggtggggg aggcaaagaa      3900
     aaactgtacc gactggaaaa tcgtggacgg gcaactctat ttcctgaaac cgcgcccggt      3960
     gacttcggcs atcgtccccg atctagaccg atggaaattg gtattgccac gggaattgcg      4020
     ggaggaggct ctgcgtgaat ctcacgacga tccgcagtcc ggtcacttgg gggtcgataa      4080
     aacgcactac cgcttgagta tcgcgtacta ctggccgaat gcgtttcgcg atgtggcagg      4140
     gtacgtgaag aggtgcgaga tctgccagcg gacaaaggtc gaacaagcca gtcccgtggg      4200
     attgatgggt cgtcgcgtga tagaggcacc gtggacggtc atcgcggcgg acatcatggg      4260
     tccattgccg cgaagtaaga acggctactc gtatctcctc gtgatacaag acttgttcac      4320
     taaatgggtc gaatgccaag cgctgcgaac cgcaaacggc aaaaagatac gggaagctct      4380
     cgaagatctc gttttgtcgc ggtggggtac gccaaaattc ctactgacgg ataacgggac      4440
     cgagttcgtg aaccagacgt tgagagcttt tgcgcaggat ttcgggataa cgcacacaac      4500
     cgtcccgccg taccacccgc aagccaaccc cgtggagagg gtgaaccggg tattgaaaac      4560
     gatgattatt gcgtttctcg atcgtgacca ccgcgactgg gatctccata tccacgactt      4620
     ccgtttcgcg tataacaccg cccaccactc gtccatcgga acctcgcctg cgtttttaaa      4680
     tctcggtcgt gaattagagc caattaactc tttgcgtcgt cgttgccgca acgctaccga      4740
     ggtggcctcg ggcgaagcgg gggactggtc gcgacgtatg caagacttgc gagcgttgca      4800
     tgcgtgggtt tcggaaaatc ttgagcaagc ataccaaaaa caagctaagt attacaacca      4860
     gcaccggcgt gataaagttt ttggggtggg agagctcgtt ttgaagagac agcacgttct      4920
     atcgtccgcg gctcaaaaca tcgcggcgaa gttgtcaccg aaattccatg gaccattccg      4980
     agtttcgaaa gccctttcgc ctgtcgtata cgagctcacc gagttagacg gaaccgcggt      5040
     aggaaaggtc cacgtgaagg acctaaaagc gtataacggt gcctagggtg agacgtgctt      5100
     aaagctttct cccttctttc tctcgtttct ttcctccccc cctgaccaag cagccagatg      5160
     tcggatggaa gggagtggta ccgccgcgcc atggcggagg agtacckgcg tcggcgsgag      5220
     gagttcctgt tgaagtaccg ggactctaca gcatgatcta ctgggagtac ccggacttct      5280
     ggcgggagcg cagcgagctc gagcggctga gggagcggag ccgcggagcg cgggaccgcg      5340
     gagcgaagcc agcggcgggc gacccgtggc gtgggggttc aggtggtctg gggtggaggt      5400
     gccaccaatg ggagaaagcc acccaaacgg acccggcccg ggccggagcc ccgcaccgaa      5460
     ccgggaggag gagagcgggc gacggcgagc ggccggagac tgcccgcgtc gtggaccagc      5520
     cgcgagaccg aaagcgccga ggcctgcgct gcaaatccgc gcgggggagg aggatacccc      5580
     cctcccgggc tgctggaact gcggttccag ggtccaccgg tactcccgct gcccagagcc      5640
     actagggagc gcgttctgct acgcttgcgg ctacgtcggc gtcaccatca gggaatgccc      5700
     gcgatgcggc gaggattggc cccgagcggc cgcgcagccc ggagacagcc gctgatagga      5760
     ggagccaacc cgggagaggg agcgagggaa gaggcctcga gccgcgggag ccccccgcat      5820
     cccgaggagg cgcggccggc gtcgggaccg aacggcctgg ggggacacga atcgtgacct      5880
     ccgacttata taaccatatt tttttttgtg agatttctct ttgagtccgt ccaatttttt      5940
     ttgtttgtgt gtttgttttg tttttgccta ctggttgatg gccaatgttt tctttttttt      6000
     tcttgtcstt ttgaggcccc cccccccccc tgtgcaaacc cgtcgtaaac caataaaacg      6060
     ctttttttct tgcgtaccta gttactgtct cactttggta actatcctcc cctccaccct      6120
     gcttttcttc tccctattag gttacgctag gcactgagga tcgacgttgt gwmtgtccmg      6180
     tgtgaacgtc tgggtgtaat cgtttgggaa gtgccgttaa ggagaaggta cgactgggct      6240
     gtggagtatt atcggccagg cggaggtgac aaggcctccg ctggtaagta cgacgcctcg      6300
     ttttcgcgtc tcttttttgt ttctttttat cattgctgcc gcctcgtggg gaggcatctg      6360
     agaattagtt aaaatgattg cggactttgt gttctagtgc ttggttgcgg gcggggcggg      6420
     cgagcggagt tgggagtcgc cgggaaaatc ttcggcgaac tttagagtag gcatctcgaa      6480
     agtgttaagc gttttctgcg tttcgggcca ccggactgga tgccacggac cgggatgtgg      6540
     gcacgccgcg agggcgccag atgttcctcc cgaccgggcc cagcggaggg ccaccccttt      6600
     ttggcgtttg gagagcccgg agaccgccgg actggttgat cggcaacgga tgtgatccag      6660
     gagtatgggc acctccctct cgagccggac agcccggagg ctccacttcg tagggcaatt      6720
     tctagcgtag gcagccggac gcggctgaga cagttactgt actcccggcg actgcaaccc      6780
     gctccgccca tctccctcgt ggctactcga caccgtttgg cgaaatgggt ggctatcgac      6840
     gttcgtcgat agccaagacc tcctcggtcc tccccgggga agggggagt                  6889
//
ID   Gypsy-29_SI-LTR repbase;    DNA;    INV; 1763 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 19.02, Created)
DT   21-APR-2014 (Rel. 19.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_SI_;
KW   Gypsy-29_SI-LTR; Gypsy-29_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1763
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 449-449 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1763 BP; 333 A; 491 C; 521 G; 415 T; 3 other;
     tgtgacgtga catcccgttt ggctgtccgt cacagggatc gtaagatccg gacgaggagc        60
     gcacgctgcg gctttacgtc ctctcggctc ggagacggac gtgtcggcgc gtgcgctaat       120
     aattccgcgt ttttgttttg tgtgcttgtg ttcgtccgtt aattttagcg acgttttgcg       180
     gatcggcggc tagcggatat tcattttttg tatcgacgaa atctcacccg gcgagcagac       240
     tgcaagaagg aggacctacc gccacttgag atctttcgga ccgtgcgcag gatcgcagta       300
     gcgcgcacga caggtgatct ctcttcattt aattacgtta tctcttaccg tcgcgcctgt       360
     acgcaacagt aaggccgctg aaattgcagg acgcaaagag ggaaggtccg gcgtagggga       420
     cgtcgacact ccacgcagat catcgcgtag gagaccccga acgaggagct gcgagagaag       480
     gttcccgact tggtcccgag cgcgggggca ccggacgtcg aagagtccgt agggatagcc       540
     gtccggcctc gggaaaacca cgggaagagt cgcgagctgc ccgaagacac cgacctacct       600
     cgaattgcgc gccgcagcgc gacagcctga ttagagggtc gcgaggaccg cgttataagg       660
     cggaaccaat agcgcggcgc gacgaacccc cgtgcgtggg gcgagagatc ctgcgtgccg       720
     cctgccgaat ttcctcgcgc tatcgatcac ttcgctgtgg atcgtcgcga ggagctgcca       780
     cgagccgaga cgacgggagc cgctaccgag gacggtcgca tccccgtagg acgagtggcg       840
     gagmcaagcc agcgtcgtgg tgagacgaac gagacttgtg taaagccacc gatttcgccg       900
     gtcggatgag tcgcgcgcgc ggtagttgcc gttagagtta tcgttcgccg taaaatcttc       960
     cgccggaatg ggaacacgcc ggtgatcgcg tgctgtccgc gtgctcagcc gccgtgcgcc      1020
     tcatccgatc aagtcgcgtc ttgattcttt cggttccgtt tattgagagc gtcgccgaca      1080
     ccacagccaa gtcgcgttaa ttgcgtcata ttcttgtgtg tcgtctgtag tagcgtttgt      1140
     atgcgtttct gtttggcgat gccgttttgt tccgcgtatt tccgawcgct tgcttcgtac      1200
     cgaatcgccg tataatttcg cgtgaaatga gagtgcgtgt gtagagttgc gagtgtgcac      1260
     ggcgtatttt gtccgccgct gmttagaatg gaatttcgac tctctccgtt cggtgagctc      1320
     gtaccgacga ccgcgtggta ttttccgacc gcgcccgggt cgcgagacat cgtcgcggag      1380
     ccctgtgagt agtgttagat ctcggaaata cattgtccat ttctctatta aattgaagtg      1440
     ttttctttaa gttccctcgc tctcctctac caccccgccc gccgcgaacc accccctctg      1500
     ccaattccgt ggctgagcta ccggttaaga gagcccgtta ttgcccgtga cgaagtagag      1560
     tattttcgcg tttccttttc cggcatgaat cgagagatcg gtcacgtccc gatctaagag      1620
     tggcacgctc gctcgtgcct ggcgcccaat cgtaccgtct aacttcgcgc atttgatgtg      1680
     agcgacttcg cgattaccgt ggctgcctaa ctagcgtcac gagcaattaa cgtagttgca      1740
     ccacgctcgt gagtgcggtc gca                                              1763
//
ID   Gypsy-29_SiCu-I repbase;    DNA;    INV; 5735 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5735
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5052-5052 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..4921
FT                 /product="Gypsy-29_SiCu-I_1p"
FT                 /note="gag, zinc knuckle, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MANTRRGRARNIVDGDEEGAAAAGPVQHSPDRPAVGV
FT                 VPPPNQPQVGDVIPPNRNLAQRPNLLVPPQVNAPPQVNVPPPPPQPGQINA
FT                 GALPDNAMALLMQQMVQGMQQINNSLRNLHAQNAPGNGRAANVQPPPVVAG
FT                 PANAPNNGQPQNPRGPRTHHLKSSEVKIPTYSGASDLNTPFDYLLEVEKYQ
FT                 AIVGYSEQDIMDYVIPVSLTGDAYSWYRYEPPFQNWDDFKLRLRQEFQAVD
FT                 YVEDLKRELDNRYQGPNETLTAFIRVILDYYVRLGENTPEAEQVAKIKRLM
FT                 HPEYRKSLVGIPTNTLDQLRAAAPQAQELIKSYRSYRLPPVAGSLEPSLAW
FT                 KPVAPATNKSYANVAAAMPAENNSNSHKLHPAAVDPYTYFHKARRVRFSGN
FT                 NDANKPVQRQNSPSPSSSRESSPSRLCYNCRQPGHMAKDCMQKSKQNSSQE
FT                 MLCTDSDDDMATVVLAXKDKRPFMKIKILGQDFPAFLDTGSSISVLGDDVI
FT                 SLIREKGIKCREANKKIKFLKGNYTANESATLTVNYGADSRKHTFYLAPST
FT                 ITTVLLGRDFLGPAMIAVHIGNGGWTVGLNPQKVIPFIKCRTPFLSTQDHT
FT                 IASAEDSCGEEMFLNTTDYPAQVLATWDHVDDESPTKEIREEISLFPDSEL
FT                 YEIKAPAFLTDTERNELQALLAEFKPMFTRLPGLCHAYEHSIDTGDHKPVS
FT                 TTLRPMSPAKRKIFDESFRELLAMDIIEPSYSPWSANAFVVPKKDGTLRPV
FT                 IDYKPINKITVTDCYPIPRINDQLAMLGPCSWFTLFDIAKGYYQIAMKSED
FT                 KPKTAFLSSHGLWQYKRMPMGLKNSPSTFQRCMDTILGPLKWTCCVVYFDD
FT                 ICVYSQNYADHITHIRQVLTKLRDAGLTIHPGKVQLCRNKLKYLGFIIEPG
FT                 KCSPDPEKVRCLKEYPRPSRPKDIQKFLGFVGFYMRFIPNYSEHARPLTQL
FT                 TRKGKKFIWNEDAERGFQALKNSLSEYSLLYLPDMNKEFIVQCDASEFCIG
FT                 SLLIQEIDGVRHPIWFASRLLKDAETRYSTVQKEILACIWSIEKYRQFIEY
FT                 SHFTLETDHQAISWLNKLKDPTGRLGRWFLKLQMYDFDVHYRKGSSKIMKG
FT                 PDALSRIQHSFFMDANEISRSEFIKAQDDDPFLLSIKECIKKSGSDANSAI
FT                 TRVAEQCTLTDDGMLMHYVGCRGKPWENESLYWRIYVPESMYEKVICMFHD
FT                 DALSCHLGIRKTYSRLEHRVYWKGMRHTVQEYIRHCKVCQESKAARLPPAP
FT                 ASGFESNGPFDLITVDLMGPYTKGKQQHTHILVCVDYFTRYVELFPLRQTK
FT                 AETIIRKLWELCCRWGLPRLILSDNGTQFTSKVYAEWCQSLGITPFYISAY
FT                 HPQANMTERYCQSVKNIIICMSQKCKDWDIHLNEIAFALRSSKNDSTGMSP
FT                 AYANLGRELRTPFDNIMRVELSKFKEVHEIADKLATVQCIIKEQSKDSQVK
FT                 YLKHYNEKARARLFKTGDLVWLRSHFLSDASRGITASLTKKREGPYRVSSV
FT                 ISQNIYNLEHRETGAKVNKVHINELSPYFQPLNNEQPAKQQAEAMEEFPEA
FT                 QSLLPIHAHPNDGANGPIPVPQTEETTLSSGSCADPKENAEVQVRGCAAAT
FT                 QQ"
FT   CDS           4710..5465
FT                 /product="Gypsy-29_SiCu-I_2p"
FT                 /translation="MSNQLNNRRRQWRNSQKPNLCFPFMLTQMMEQMAQFR
FT                 YPKPRKQRSPQALARIQKRTQRFKSGDVQRQRNNSSHSQPEPMQVDVPHAS
FT                 STQTTATHNKQFRTVFTQTDPVQVFPLTPTDTRTVVVNEDNRYRMQKRTER
FT                 NKFILEQRKKFAAQKKATGQALAVHRAIEALQQPDNSHSPKMNRTSGPPGA
FT                 SCTGMSFPKDYFNSSPSPVDGMKNMTIQETLELNSLPPTPGKGTTNDAEDD
FT                 LLRSDDEGKNK"
XX
SQ   Sequence 5735 BP; 1876 A; 1219 C; 1172 G; 1465 T; 3 other;
     aaattggggg ctcaaccggg atcaccttga tcagtaaatt aagtacgtat tagaaataaa        60
     gatggctaat acaagacggg gacgtgcacg taatattgtg gatggtgacg aagaaggagc       120
     agcggctgca ggccctgttc agcacagtcc cgaccgtcca gcagttggag tggtaccacc       180
     accaaaccaa cctcaagttg gagatgtcat ccctccaaat aggaacttgg cacaacgacc       240
     taatttactt gtgccaccac aagtaaacgc accaccacaa gtaaatgtac caccacctcc       300
     acctcaacca gggcaaataa atgctggggc tcttccagat aatgcaatgg cattattgat       360
     gcagcaaatg gtacaaggca tgcaacaaat caataattct ctgagaaatt tgcatgctca       420
     gaatgcccca ggaaacggac gagctgctaa tgtccaacca ccaccggtag tagcaggtcc       480
     agctaacgca ccgaataacg gtcaaccaca aaaccctaga ggtccacgca ctcatcacct       540
     gaaaagtagt gaagtaaaaa ttcctactta ttccggtgca tctgatttaa ataccccatt       600
     tgattatctg ctcgaggttg aaaaatacca agccatcgta ggatattccg agcaagatat       660
     aatggattat gtcattcctg tttccttaac aggtgatgca tattcatggt acaggtatga       720
     accaccgttt caaaattggg atgattttaa gctccgcctt cgacaagaat ttcaagctgt       780
     tgattacgtt gaagatctga agcgggagct tgataataga taccaaggtc caaatgagac       840
     cttgacggct tttattcgag taattctgga ttattatgtt cgcttgggtg aaaatactcc       900
     agaagcagaa caagtagcaa aaattaaaag gttgatgcac ccagaatacc gaaaatcatt       960
     ggtaggtatt ccaaccaaca cacttgatca gctacgtgct gctgcacccc aagcgcaaga      1020
     gctgataaaa agttatcgct cttacagact gccaccagta gcaggtagtt tggagccatc      1080
     attagcatgg aagcccgttg cacctgcaac aaacaaatcg tacgcaaatg tagcagcagc      1140
     aatgccggca gaaaacaaca gcaattcgca caagcttcat cctgctgcag ttgatcccta      1200
     tacatacttc cataaagcac gaagagttcg ctttagtgga aataatgatg caaacaagcc      1260
     tgtacaaagg cagaatagtc cttcaccatc ttcctcaaga gaaagctcac cttcaaggtt      1320
     atgctacaat tgcaggcaac ctggtcatat ggcaaaagac tgcatgcaaa aatcaaagca      1380
     gaacagctca caagaaatgc tttgcacaga ctcagatgac gatatggcga cagtcgtcct      1440
     cgcnaanaaa gataagcggc cattcatgaa aatmaaaata cttggtcaag acttccctgc      1500
     atttttagat actggaagtt ccatctccgt tctcggagat gatgtgattt cattaattcg      1560
     ggaaaaaggt atcaaatgca gagaagcaaa taaaaagata aaatttctca agggaaatta      1620
     tactgccaat gaatccgcta ctctcactgt taattacgga gcagattccc gtaaacacac      1680
     attttacctt gccccaagta caatcactac tgtactgtta ggcagagatt tcctagggcc      1740
     agcaatgatt gcggtacaca ttggtaatgg aggatggaca gtgggtttaa acccacaaaa      1800
     agtcattcct ttcattaaat gcagaactcc ttttctgagc acacaagacc atacaatcgc      1860
     aagtgcagag gattcatgcg gtgaagaaat gtttttaaat accaccgatt atccggcaca      1920
     ggtactggcg acttgggatc atgttgatga cgaaagccca acaaaggaaa taagagagga      1980
     aatttctctt ttcccagaca gtgagcttta tgaaattaaa gctcctgcat tcctcacaga      2040
     tacggagagg aatgaactcc aagctttgct ggctgaattt aagccaatgt tcacccgttt      2100
     acctggtctt tgtcatgcat atgagcattc tatagatact ggagaccaca agccggtgtc      2160
     aactacatta cggccaatgt ccccagctaa gcgaaaaata ttcgatgagt cattccgtga      2220
     gttactcgca atggacatta tagaaccaag ctatagtcca tggtcagcca acgcattcgt      2280
     agtcccgaaa aaagatggga ctctgcgccc tgtcatcgac tacaagccca taaacaagat      2340
     aacagttaca gactgttatc ccataccaag aattaatgac cagcttgcaa tgctgggccc      2400
     atgctcttgg ttcacattat ttgatattgc aaaaggctac taccaaattg caatgaaaag      2460
     tgaagataag cccaaaactg cgttcctttc cagtcatggc ctgtggcaat ataaaagaat      2520
     gccaatggga ctgaagaata gtccgagcac ttttcaaaga tgcatggaca caatattagg      2580
     tcccttaaaa tggacttgct gcgtagtata ttttgacgat atctgtgtat atagtcaaaa      2640
     ttatgcagat catattacgc atattaggca agtgctgacc aaattgcgag atgctgggct      2700
     caccattcac ccaggtaaag ttcagctttg tcgtaacaag ctgaaatacc taggctttat      2760
     tattgagcct ggtaaatgtt cacctgaccc agaaaaggta cgatgtctaa aagaatatcc      2820
     acgtccatca cgcccaaaag atattcaaaa attcttgggc ttcgtaggat tttacatgag      2880
     attcatacca aactacagtg agcatgctcg tccgctcaca caactcacca gaaaaggtaa      2940
     aaagttcatt tggaatgaag atgccgaaag aggatttcag gctcttaaaa attctctttc      3000
     cgagtactct ctcctttacc taccagacat gaacaaagaa ttcatagttc agtgcgatgc      3060
     aagtgaattt tgtattggaa gtcttcttat tcaggagata gatggcgtta ggcacccgat      3120
     ttggtttgcc agtcgcttgc taaaagacgc tgaaacaaga tactccacag tacaaaagga      3180
     aattctagct tgtatctggt ctattgaaaa atataggcag ttcatagaat attcacattt      3240
     cacgcttgaa actgaccacc aagcgataag ttggttaaac aagctaaagg atccaacagg      3300
     tcgtttggga aggtggtttc tcaaattaca aatgtatgat tttgatgtgc actaccgaaa      3360
     aggtagtagt aaaatcatga aaggtcctga tgcattgagt cgcatacagc attcattttt      3420
     tatggatgca aatgagatct ccagatctga gttcataaaa gctcaagatg acgatccgtt      3480
     tttactctca ataaaagaat gcattaagaa aagcggctca gatgcaaatt cagctatcac      3540
     acgcgtagca gagcagtgca cattgacaga cgacggaatg ctaatgcatt atgtaggttg      3600
     tcgtggtaaa ccatgggaaa atgaatctct ctactggaga atttatgttc ctgagtcaat      3660
     gtatgaaaaa gtaatctgca tgtttcatga tgatgcgctc tcttgccatt taggcataag      3720
     aaaaacgtac tctcggttag agcaccgtgt atactggaaa ggaatgagac acacggtaca      3780
     ggagtatata cggcattgca aggtgtgcca agaatccaaa gcagcaaggc tgccgcctgc      3840
     tcctgcttca ggatttgaaa gcaatggtcc atttgacctg ataacagtag atttgatggg      3900
     accgtataca aagggaaaac agcaacacac acacatctta gtatgtgtgg attatttcac      3960
     tcgctatgtc gagctattcc ctttacgtca gacaaaagcc gaaaccataa tacgtaaatt      4020
     atgggaatta tgctgtcgct ggggcttgcc tcgccttata ctaagtgaca atgggacaca      4080
     gttcacttca aaagtgtacg cagagtggtg ccagtcactt ggaattactc cattctacat      4140
     ctctgcgtac catccacagg caaatatgac tgagcgatat tgccagtcag taaaaaatat      4200
     aattatttgc atgtcacaga aatgcaagga ctgggatatc catctcaatg aaattgcttt      4260
     tgctcttcgc agtagcaaaa atgatagtac tgggatgagt ccagcttacg caaatttagg      4320
     cagagaactt cgtacaccat ttgacaacat catgcgagtt gagttgtcta aatttaagga      4380
     ggtacacgaa attgctgata agctggccac tgttcaatgc ataattaaag aacagagtaa      4440
     ggacagtcag gtcaaatacc tgaagcatta caacgagaaa gctagagcaa gattatttaa      4500
     gacaggcgat ttagtctggt tacgctctca ctttctgtct gacgctagcc gaggaataac      4560
     tgcctctctt accaagaagc gagaaggacc ttaccgggta agctcagtca tttcccaaaa      4620
     tatatataat ttggagcatc gtgagacagg ggctaaggtg aataaagttc acattaacga      4680
     attatcccca tattttcagc ctctgaacaa tgagcaacca gctaaacaac aggcggaggc      4740
     aatggaggaa ttcccagaag cccaatctct gcttcccatt catgctcacc caaatgatgg      4800
     agcaaatggc ccaattccgg taccccaaac cgaggaaaca acgctctcct caggctcttg      4860
     cgcggatcca aaagagaacg cagaggttca agtcagggga tgtgcagcgg caacgcaaca      4920
     atagcagcca ttctcaaccc gagcccatgc aggttgatgt accacatgca tcatcaaccc      4980
     aaaccacggc cacacacaat aaacaatttc gcactgtctt tacacaaaca gatccagtgc      5040
     aagtgttccc attaacacct actgatacac gtaccgttgt tgtcaacgaa gataatcggt      5100
     atcgtatgca aaagcgaacc gaacgaaata aattcattct tgagcaacgt aaaaagtttg      5160
     ctgctcaaaa gaaagctact ggtcaagctt tagcagtgca tcgtgctatt gaagcattgc      5220
     agcagccaga taattctcat tctccaaaaa tgaatcgtac gtctggtcct cctggtgcaa      5280
     gttgcacagg tatgtcgttt cctaaagatt attttaattc ttcaccatca ccagttgatg      5340
     gtatgaaaaa tatgaccatt caggagactt tagagttaaa ttctcttcca ccgactccag      5400
     gtaaaggcac tacaaatgat gccgaagatg acttacttcg gtcggatgat gaaggtaaaa      5460
     ataaataaac tgtcgcgtga atgtcttgat aaaaagttgt tacatattca atttccgctt      5520
     atgtatcttt gattatgatt atttataatt ataaaatgat tagttaagtt atccaagtct      5580
     tctaaataat gaaatataat aataagtcaa taatgtgagt taattataac aagtgaataa      5640
     taaatggaaa aattcttatg tacatgaaat aataatgagg ttatgtgttc ttaaaaataa      5700
     ataatattta tttttactta aagggggaag gaatt                                 5735
//
ID   Gypsy-29_SiCu-LTR repbase;    DNA;    INV; 554 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-554
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5106-5106 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 554 BP; 153 A; 109 C; 90 G; 202 T; 0 other;
     tgtcaggtac cgactttaga gaatggtatt gttcctgtat gaatattatg cagatgaact        60
     attctttaag atgatctagt ttttgcttta tgctaatttg ttttgttcgc attatggatt       120
     gtcatccatg atgcatgtta acatgtaagt ttattgcgct gcgtctcata taaaagggcc       180
     agcagaactg gtcatcatca tcagttatac tttacctttt gagagactta ttcctctgag       240
     agattgcctt tgagctacgc tcaggttatt tttcctaact ttcgttttct gagagctatt       300
     ccctcagaaa actcaatcga gattgtttcc attccgggaa catttccgat acctgactta       360
     ggacttccat cctacagttt tctttaattt aaaacataaa acactttgtg ttatttctat       420
     ctgcacttat ttactgatcg catctattca tatgcatagt ctatggctat aaggagaacg       480
     aaccaaattt ctttgttacg ttgcatattg gaaaaatacg cataagcata tttcacccaa       540
     caaccaacct aaca                                                         554
//
ID   Gypsy-29_SpEx-I repbase;    DNA;    INV; 4620 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4620
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4098-4098 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4008
FT                 /product="Gypsy-29_SpEx-I_1p"
FT                 /translation="MPTHIFIIIIFFFFTNFIFIFQMDPAVLENFLKAIRD
FT                 AVAGNRNEDDVVLPPFDPEKNDNGAENWCNNIDTVAKDRGWSSITTVSKAG
FT                 KALKGSALLWFETWDPDEGRSWENFKTSIKDLYPEKKNLSEKLSKAVLYTS
FT                 DVAETYCEYAREKLRLFRNTKVMFSEEQLVELVCGGISDINIRMASFNSRV
FT                 NSTSELISLFTTYIKNPRKRPTETINTPSTNKRLKPESLNPSNPPTCFLCN
FT                 KTGHVRSQCFKNKNQNTPNSETPKIQCSYCKKAGHNELICFFKKRDAEKSA
FT                 SNSVNCSTNGNLSLTDIKICDRPIKALIDSGASCSILKRSIANSFGRRLEP
FT                 CSTSLKGIGNGMITISSKISLPVRFSNDYLEIEFCVANDTDCHYDCLIGRN
FT                 VVQNPNIAIVIDTNGCRLKRINYTESVNALNLTTTIDNHIQVLMELTSHLD
FT                 SSLQRKIKSIFDKFSKVLPSSDYISTVKTGEMIIRLKKDEVVYYRPYRLAS
FT                 TEKEKVQEIISDLLKKNIIRESLSPFASPVLLVKKKDGSDRLCVDYRALNK
FT                 IIEKDRYPLPLIEDQIDKLGNAKYFISIDMKNGFHQIPIKEECIKYTAFVT
FT                 PDGHFEFLKMPFGICNGPSVFQRAINTAVKDLKFLLVYIDDLLIPFSEIAQ
FT                 GLEYLEQTIEALFLSGFTINLKKCKFFVQEIDYLGRHISSKGVRPSNDKVN
FT                 ALTNSPIPGTVKEVRQFMGLANYFRKFIPEFAYRTACITRLTKKDQKWQWG
FT                 PEQDAAREYVIKHLISKPLLNIFNPKLRTELHTDASSIGYGAILLQKEDSQ
FT                 CRVIAYFSKRTSPAESKYPSYELETLAIFNALKQFRIYLLGLNFTIVTDCN
FT                 SVKSTMNKRDISPRVARWWTYMQDFTFDIVYKKGKYVTHVDYLSRNPAITS
FT                 TETSEVINIIDEPDPPPSWLHSAQNNDPETQSILEKIRNGDTDANRYIIKN
FT                 SLLLYKNEDGDPPKFFIPKGYRLSLLRLFHDENCHVGYNKTLTKISENFWF
FT                 PSLAAFTKKYIGHCLVCVKGKNHSGPKQGLLHPIEKTIPFHTLHLDCTGPF
FT                 SVSSEGYKHVLIMVDGFTKYCILKPLKTLNGQELVSILRENLTLFGTPNMI
FT                 VTDRGTNFTSEPVRSFLRDMQINHHMIATGTPRSNGQAEKYVGTIINMLTT
FT                 TVNDSSEWPSVLWKIQLSLNTTMQKSTGFSPTRLLIGCNGNIPPIQARLDE
FT                 IQDNDYIQNNDSEADRDLARQNLRETAEKYKKRFDTTRRNNLVFKKGDIVY
FT                 VNQNHRRHDKLSPKFKGPYEVIDILEHDRFSLKGLNTLRNIIVAKEKLKLW
FT                 PGEWVEQNSSFEEFP"
XX
SQ   Sequence 4620 BP; 1583 A; 807 C; 832 G; 1398 T; 0 other;
     tcagaagtgg gatacgaaac cagctttatg cctacccaca tatttattat tattatattt        60
     ttttttttta ctaattttat atttattttt cagatggatc ctgctgtatt agaaaacttt       120
     ctgaaagcca tccgtgatgc tgtagctggt aaccgcaatg aagatgatgt ggtgttgccg       180
     ccgtttgacc cggaaaagaa cgacaacggt gctgaaaact ggtgcaacaa catcgacacc       240
     gtagctaagg accgtggatg gagcagtatt actactgtca gcaaagctgg taaggccctt       300
     aagggttctg ctcttttatg gtttgaaacc tgggatccag atgagggtag aagttgggag       360
     aactttaaaa catctatcaa agatttgtac cccgagaaaa agaacctgtc agaaaaactt       420
     tcaaaagccg tcctttacac ctcggacgtt gcagaaacct attgtgaata tgctagggaa       480
     aagcttaggt tattccgtaa tactaaagtt atgttttctg aagaacagct ggtcgaactt       540
     gtttgtggag gtatatcgga tattaatatt aggatggcat cgtttaacag tcgtgtcaac       600
     agtacatcag aactgatatc tctttttacg acttatatta aaaaccctag aaaacgccca       660
     accgaaacta ttaacacacc ttcgactaat aagcgtctta agcctgaaag tctaaaccct       720
     tctaatccac ccacttgttt tttgtgtaat aaaactggac acgttaggtc gcaatgtttt       780
     aaaaataaaa accaaaatac cccaaattcg gaaacgccta agatacaatg ttcttattgc       840
     aaaaaggctg gtcataatga attgatttgt ttttttaaga agagagatgc ggaaaaaagt       900
     gcctctaata gtgtcaattg ctccacaaat ggtaacttat cgcttactga tataaaaatt       960
     tgtgacaggc ccattaaagc tctaatagat tcgggtgcta gttgcagtat tttgaaaaga      1020
     tcaatagcaa atagttttgg tcgccgttta gaaccctgtt caacatcatt aaagggaata      1080
     ggaaatggga tgattaccat ctcctcaaag attagtttac ctgtcagatt tagtaatgac      1140
     tatttagaaa ttgaattctg tgtagctaac gatacagatt gccattatga ttgtttgata      1200
     ggcagaaatg tagttcaaaa tccaaacata gctattgtta tagacaccaa tggttgtaga      1260
     ttaaaacgaa taaattatac agaatcagtt aatgctttaa atcttactac tactatagat      1320
     aatcacattc aagttttaat ggagttaaca agtcatttag attcaagcct acagcgtaaa      1380
     ataaaatcta tttttgataa attctcgaaa gtgttgccaa gttcagatta tattagtaca      1440
     gttaaaacgg gtgaaatgat cattaggttg aaaaaggatg aagttgttta ttatcgacca      1500
     tataggctag catctacaga aaaagaaaaa gtccaggaaa ttatttctga tctacttaaa      1560
     aagaatataa ttagagaaag tctgagccca ttcgctagcc cagtcctttt ggtaaagaaa      1620
     aaggacggta gcgatcgact ttgtgttgac tatagggccc ttaataaaat aatcgaaaaa      1680
     gatagatacc cactaccgtt aattgaagat caaattgata aactaggaaa tgctaaatat      1740
     ttcatctcta tagatatgaa aaatggattt catcaaatcc ctattaaaga agaatgtatt      1800
     aaatacactg cttttgttac accggatgga cacttcgaat ttcttaaaat gccatttggt      1860
     atctgcaacg gcccctctgt ttttcaacgg gccattaata cggcagttaa agacctaaaa      1920
     tttttattgg tatatatcga tgatttgctg attccatttt ccgaaatagc acagggttta      1980
     gaataccttg aacaaaccat tgaggctcta tttttgtcag gatttaccat taatttaaag      2040
     aaatgtaagt tcttcgttca agaaatcgat tatttaggta gacatatttc tagcaaaggt      2100
     gttaggccta gcaatgacaa agttaatgct ttaaccaact ctccaatccc cggtacagtg      2160
     aaagaagtcc gccaattcat ggggctggca aactatttta gaaaattcat acccgaattt      2220
     gcatatcgca ccgcctgtat cactagatta actaaaaaag accagaaatg gcaatggggg      2280
     cccgaacaag atgcggctcg agaatatgtt ataaaacatt taatttcgaa accattattg      2340
     aatatattta atccaaaatt aagaactgaa ctacacaccg atgctagtag cattggatac      2400
     ggtgctatac ttttacaaaa agaagacagt caatgtcgtg tcatagcata ctttagtaaa      2460
     cgtacttctc cagccgaatc gaaatacccc tcttatgaat tagaaacttt agctattttt      2520
     aatgccttga aacagtttcg gatttatttg ctaggtttaa atttcacaat tgttaccgat      2580
     tgtaactcag taaaatcgac catgaataaa agagatattt ctcctcgtgt agcaagatgg      2640
     tggacctata tgcaagactt tacgtttgat attgtgtata aaaagggtaa atatgttact      2700
     cacgttgatt atctgagtcg caatccagca ataacttcta ctgaaacgtc ggaggtaatt      2760
     aatatcattg atgaacctga tcctccacca tcttggctac actctgcaca aaataacgac      2820
     ccagagacac aaagtatttt agagaagatt aggaacggtg acacagacgc aaatcggtat      2880
     ataatcaaaa atagtttgtt gctttataag aatgaggacg gtgatccacc taaatttttt      2940
     ataccaaaag gttatagact cagtttgtta cggttgtttc atgacgaaaa ctgtcacgtt      3000
     ggctataaca aaactttaac caaaatatcc gaaaatttct ggtttccaag tcttgctgct      3060
     tttacaaaga aatatatagg acattgttta gtgtgtgtaa aggggaaaaa tcattcaggg      3120
     ccaaaacaag gcctccttca ccccatagaa aaaactatac catttcacac attacattta      3180
     gactgtacag gaccattcag tgtatcttcc gagggctata aacatgtttt aataatggtg      3240
     gatggtttta ccaaatattg tatactcaaa ccacttaaga cgcttaacgg tcaagaattg      3300
     gtctcaatct tgcgagagaa cttaacttta ttcggtacac ctaacatgat agtaactgat      3360
     agaggcacaa attttacatc tgaacccgta cgatcatttc ttagagatat gcaaataaat      3420
     caccatatga tagccaccgg tactccaaga agcaacggcc aagctgaaaa atatgttggc      3480
     actataatta acatgttaac cactactgtt aatgattcct cagaatggcc aagcgttctg      3540
     tggaaaatac aattatcact gaatactacg atgcaaaaat caacaggttt ttcaccaaca      3600
     aggttattaa ttggttgcaa cggaaatata cctccaatac aggctcgact agacgaaata      3660
     caggataatg attatattca aaataatgat tctgaagctg atagggactt agctaggcaa      3720
     aaccttagag aaactgcaga aaagtataaa aaacgatttg atactactcg tagaaataat      3780
     ttggttttca aaaaaggtga tatagtctat gtaaatcaaa accacagaag gcacgacaaa      3840
     ttaagcccta aattcaaagg cccttatgaa gtaattgata ttttagaaca cgatagattt      3900
     tccttaaagg gtcttaacac gttaaggaat attattgtgg caaaggaaaa attaaagctc      3960
     tggccaggag aatgggtcga gcaaaattct tcctttgagg agttcccata gcttcagcat      4020
     cactagccat gatagaatat ttattgtacc tttgttaatt ataataatta tagttaattt      4080
     tggttgtcat ataattttta tctttttcat gttatttcct ttttgtacac tgattaatct      4140
     ttgtaaaaca atgtgttttt ttttaactga ttataatttg tgttcaatta aaatttatta      4200
     tataattata attgagatta ttataattgg atttaatcaa tcattggata ttcaaaatga      4260
     ataaataaca taatcataca aaacaattct tacattactg ctggtcagcc gctgccctga      4320
     tactagtctg aaattcactc gcagcaggtg ataggactag tatgccaagg ccagaggcta      4380
     ttgtatgaac tgctggtcag tcactgccct gataccagtc tgaaattcat tcgcagcagg      4440
     tgataggact ggtatgtcaa ggccagaggc tatcatatga attgccaaag gtccctgccc      4500
     tgatattagt ttccaattca tgtgcagaaa accataaaac aaaaatacca ggttcagaga      4560
     ccttttgaaa ctaactataa gttgggtact tcgagagcga agtacaggtc agtctggccg      4620
//
ID   Gypsy-29_SpEx-LTR repbase;    DNA;    INV; 773 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-773
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4158-4158 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 773 BP; 252 A; 118 C; 92 G; 311 T; 0 other;
     tgatagatta ttccaattat ttcagtttgt tcattacatc aaatcacgta aatttacata        60
     attgaacata aataaagcca ttcagacgat aattataacc ttgttacatg tgatgtacat       120
     catttaatag ttccttatcg aaatataacg aaagaaagtc ttttcattgt tgctttgtgt       180
     atattacata tttaactgtt aattacaaaa tggttatttt actggattat tgattatgcc       240
     attatagggt caaatataca attgaataat tattttcaac atatttttat aattataatc       300
     atagtttata ataaaaacta atattaactt tgtaaatgaa tcatacgatg tgacgtcatt       360
     tccttacgat tgaacattaa aaccactgcc cggtcatact cggctcattc gcttcagagt       420
     agccacaccg agcggaccag ttaagtacct ctatgttata ctttgtaatt tcctaatata       480
     tttgtttatg tactaaatat gttttatgta cctgtgtaac catgtatcca caatgtatgg       540
     tctatgatat atgtttgtgt aatgtgcctt aatttgttac ctataacgtt cctttagtct       600
     ttgttatctt gttatgctta taaaattaat aaattgctag actcatctgt cttataaaat       660
     aattacgaat attattacac ataccagtaa atagctattc ctaatcttta ataaattgtt       720
     tgattctttg tccgtttatt atttttactc atcccgtata taattatcta aca              773
//
ID   Gypsy-29_TrNi-I repbase;    DNA;    INV; 6195 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6195
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 232-232 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1285..5763
FT                 /product="Gypsy-29_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSDHEADTPPDTPPKRRRSKKTEKRRRRRSSSSTSS
FT                 STDEPAPRKTRKVSSRLSTRDVLKLLSKLKGESSKNYFGGNNNFNNVIPEF
FT                 DPSNRTQTIDCWLRKVNECATIYGWEDKQTIHYSLQKLIGLAKKWFESLQT
FT                 VKYTWDEWQRKLRKAFPSEENYGRLLEEMLTRTSRNDESLREYFYDKLGLL
FT                 SRCEIHGKKAVDCIVYGISDRSVRNGAQALNSMEPEDLLNYLSSQKPQPVM
FT                 SNNNKARERTFQKPNNSGNPTTGGNNSNSSSVICYNCRAKGHPYFKCPNPI
FT                 IKCKQCNRIGHNSDRCKLDPLISTNLNSNNNVEGAEKKTLKIDATNDTNSK
FT                 FFKTVAINDHFLEAYIDFGSECTLLRKTDANLLKLAQNYDNVPIVRGFGQS
FT                 SVVPLYKAFASVRVDDIESTVEVLVVDDAHMQTSMIIGQNFTEQSFVSVLK
FT                 DSDRLTFYRSPNKNPFDNNGGALKLYVTETTNISTTDIVPVHVDHDFTGDI
FT                 FIEGYSAVEPRREYRLFQGAYHISSGKGEVVISNLSDSSITFEKNALIARA
FT                 IPFVERDIYRINKIAEDSSTLEPLDKADIKIGPGLDNSQANALYSLLQKYR
FT                 DCFATNLGEIGCAVDVEMKIDLVDNKPIFYRPYRLSHSEREKVRETVDELL
FT                 QNNIIRESTSDYASPILMVKKKTGEQRLCVDFRALNNKTIKDRFPLPLIDD
FT                 QLSNLSGNNFFTTLDLASGYYQIPMAPSSRHLTAFVTPDGHYEFLRMPFGL
FT                 ANAPAVFQRMINKILGNRRFEYALAYLDDVLIPSKDVAEMFRRLEEVLKIF
FT                 REYGLTLKLSKCRFFDATVSYLGYEISSHGMQPGEAKVTAVKGFPTPRNIH
FT                 EVRQFLGLTGYFRKFIKSYGEIARPLTSLLKKEAKWQWSEIENQAFSLLKE
FT                 SLVSRPVLALYDPKLETELHTDASSLGVGGILMQWQKESRVLKPVAYFSRQ
FT                 TTPEEKHLHSYELETLAVVCSLKKFRVYLLGIPFRIFTDCAALRTTLTKRD
FT                 LIPRIARWWLQISEFDFSIEYRPGVQMKHVDALSRNTTLPANSDDHLSVNI
FT                 YSIEQDNWLLSLQKADPDISRIWQILKPEDDLECRDIRKNYVVKNHVVYRK
FT                 IDDQLRLVVPRSARWQVCRANHDEIGHHGYSKTLERIQSKFWFPKLRKFVK
FT                 KYVTACLECAYNKDTAAKQKSGHLYPIEKVNIPFHTVHMDHLGPFVRSKDG
FT                 NTHILTIVDAFTKYVFVRPVKDLKTKTTTKVLEKIFYDFGIPARIITDRGT
FT                 SFTSTAFKTFCEGHGIKHVLNAVACPRANGQAERFNQTILNSLAAQNSFGH
FT                 ERDWDKCLGKIQWGINNTVNASTQKTATEALFGLKMRDDLANKLDIVDQPL
FT                 ASNLQELRQDISHNIQRGQEKMKLRHDKNRIPAAKYEVGNLVKISRNNFAN
FT                 DGKSTKLLSKFIGPYKIVEVLGNDRYRIADVPGFNRTGKPYKTVIAADRMR
FT                 PWIHIKALEVHNSENSSSSEHSDDHNSD"
XX
SQ   Sequence 6195 BP; 1941 A; 1136 C; 1288 G; 1830 T; 0 other;
     cttcagaagt gacacggacc agataaaaag gtatgttcaa tcaaatatta taaaatatct        60
     tcatcaagag attttgtctg ttgggatgtt gtttttacgc ccaccatggt aattatatac       120
     ctgtacctag ttagcagaca aataatctcg acttataacc tttttctttc tttatgtgtt       180
     tggccgggga taggctccga tatcatttat tttacagtca taaaatacgt ttgaccccgc       240
     aattctagtt gtgttttctt cgtgtaattg ctcacatcca cgataaataa tacgttacga       300
     tcactgatta taacacatga aatattagga actatatttt tatgattttc ttataaataa       360
     attaccaacc tatttacata attattaact cggttaataa attgtcgagc acatttttaa       420
     atttataact gatgataaat catcttttta attttaaata atttatcttt aatatgtatg       480
     tattttgaaa tatataaccc taagatgacc cactgaccta agtatgttta tcagttgtct       540
     ggttaccata acacaggctc tgcttagctt gggatcaggt gacccgcgac cgtgtgtgag       600
     ttgtcccgga atattattat tatttatacc agatttttaa tatttaaatg cgaatagaac       660
     gtaaataaat atatatatag aacgagatgt aatatgggtg gactatgttt gttcatcgga       720
     ttacgttagg gggtggacta tatttgttca tcggattatg ttagggggtg aactatgttt       780
     gttcatcgga ttatgttagg gggtgaacta tgtttgttca tcggattatg ttaaggggtg       840
     aactatgttt gttcatcgga ttatgttagg gggtggacta tgctttgttc accgctgtat       900
     gcgtaagatt ctactagcta gtatgcttct cgctggttat gctatacgct gggtatgagt       960
     atcattgtcg tttaatactg agctatgtat gctttttgaa ttctttactt gtatttatgc      1020
     ctttaaatgt ggaaaattac agttcagata actcttaaat ccggtagata ataagtaaat      1080
     atattatcat aaaaaaaaaa atgttatttc ttttttttta agtagtacga actacaatgt      1140
     tttcctgatt acttattgtt ctgttttagt gtttataaat taatttaact tacactgtca      1200
     gcctattggt atgtaagtat ggtacatata tgataaattg cttacgtctc agatgatgtc      1260
     aaaacgtttc agaatttatt ggcaatgccg tctgatcatg aagcggatac gccgccggat      1320
     acgcctccaa agcgacggcg gtcaaagaag acggaaaaac gaagaaggcg aaggagctcg      1380
     tcttccacgt cttcatctac tgatgaacca gcgccgcgaa agacgcgtaa ggtttcaagc      1440
     aggttatcca ccagagatgt gctgaaactt ctgtcgaaat tgaagggaga gtcaagtaag      1500
     aattattttg gtggaaacaa taattttaac aatgttattc ctgaattcga cccgtctaac      1560
     aggactcaaa ctatcgattg ctggttgcga aaagtgaacg aatgtgccac tatatacggt      1620
     tgggaggata aacaaacaat tcactactct ttacaaaaat taattggtct ggcaaagaag      1680
     tggtttgagt ctttgcagac agtcaaatac acttgggacg agtggcaaag gaaattacgt      1740
     aaggcatttc ccagtgagga aaattacgga cgtcttttag aagaaatgtt aactcgcaca      1800
     tcacgtaacg atgagagcct acgagaatat ttctatgaca agttggggtt gttaagtagg      1860
     tgtgaaattc atggtaaaaa ggctgttgat tgtattgtgt acgggattag cgaccgatct      1920
     gttaggaatg gggcacaggc tctcaatagt atggaaccag aagatttgct caattacctt      1980
     tcttctcaga aaccacaacc ggttatgagt aacaacaata aagcacgtga acgcacattt      2040
     caaaaaccta acaactctgg caaccccacc acgggtggca ataattcaaa ctcaagttct      2100
     gtaatttgtt acaattgtcg cgctaaaggc cacccctatt ttaaatgccc taatccgata      2160
     ataaaatgca aacaatgtaa ccggatagga cataacagcg accgatgcaa gttagacccg      2220
     ttaatatcca caaatcttaa ttcaaacaat aacgtagagg gtgccgagaa gaaaactcta      2280
     aaaattgatg cgactaatga cactaatagt aaatttttca aaaccgtcgc aatcaatgac      2340
     cattttctag aagcgtatat agacttcggg agtgaatgta ctctattacg taaaacagat      2400
     gcaaatctat tgaaactcgc gcaaaactat gacaatgttc caatcgtaag aggatttggt      2460
     cagtcttctg tagtaccttt gtataaagca ttcgcttctg tgagggttga tgacatcgag      2520
     tcgactgtcg aagtattagt ggttgatgac gcgcacatgc agacgtctat gattattgga      2580
     caaaacttca cagagcagtc attcgtttca gttttaaaag atagtgaccg tctgacgttc      2640
     taccgaagtc ctaataagaa tccttttgat aacaacgggg gtgcacttaa actttacgtt      2700
     accgagacca ctaacatttc gacaaccgac attgtccctg tacacgtcga tcatgatttt      2760
     accggagata tttttattga gggctatagc gcagtagaac cacggagaga ataccgtttg      2820
     tttcagggcg cttaccatat ttctagcggc aaaggcgagg tcgttatatc aaatttgtcc      2880
     gatagctcta taacctttga aaagaacgcc ttgatagcta gagcgattcc ttttgttgaa      2940
     cgagacattt accggatcaa taagattgca gaggattcct ctacgttaga acccctcgac      3000
     aaagctgaca ttaagattgg accagggctt gacaatagtc aagcaaatgc gctttattcg      3060
     ttgcttcaga aataccggga ctgcttcgct accaacttgg gtgagatagg ttgtgcggtt      3120
     gacgtggaaa tgaaaattga tctcgtggat aacaaaccga ttttctaccg accctaccgc      3180
     ctatcgcatt ccgaacgtga aaaggtcaga gaaaccgttg atgaattatt gcaaaacaat      3240
     atcatccgag agtcaacatc tgattatgct agtccaattt taatggtaaa aaagaaaacc      3300
     ggtgagcaga gattatgtgt agattttagg gccttaaata ataaaacaat caaggaccgg      3360
     tttcctcttc ccctcataga tgatcaatta tctaatctta gcggcaataa tttctttact      3420
     acccttgatc tcgcatctgg ctattatcag atcccaatgg ctccgagtag ccgacatctt      3480
     accgcctttg ttacgcctga tgggcattat gagtttttaa gaatgccctt cggactcgct      3540
     aacgcgccag ccgtcttcca gaggatgatc aacaaaattc tcggaaacag gcgattcgaa      3600
     tatgcgttag cttatttgga tgacgtgctg ataccatcaa aggatgtggc agagatgttt      3660
     cggcgactag aggaggtgct taaaattttt agagaatacg gattaacttt gaagctttct      3720
     aagtgccgtt ttttcgatgc cacagtcagt tacttgggat atgaaatttc ctcacatggc      3780
     atgcaacccg gcgaggctaa ggtaacagcg gtcaagggat ttcccacacc tcgaaatatt      3840
     cacgaagttc gccaatttct cggcttaacg ggttattttc gaaagtttat aaagagttat      3900
     ggggaaatcg ctcgaccgtt gacttctcta ctaaagaaag aggcgaaatg gcagtggtct      3960
     gaaatcgaga accaggcatt ttcccttttg aaggaaagtc ttgttagccg ccccgttttg      4020
     gccctttacg acccaaaatt agagaccgaa ttgcataccg acgccagttc cttgggcgtg      4080
     ggtggcatat tgatgcaatg gcaaaaagag tcgcgtgttt taaaaccagt agcgtatttt      4140
     agtcgccaaa caacaccaga ggagaaacat ctgcactctt acgagctaga gacactggcc      4200
     gtcgtatgtt ctctaaaaaa attcagggtt taccttttag gcataccttt taggattttt      4260
     actgattgtg ctgcacttag aacaacctta acaaagagag atttaattcc gcggatagca      4320
     aggtggtggc tgcaaataag cgaatttgat ttcagtatcg agtatcggcc aggggtacaa      4380
     atgaagcatg tggatgctct cagtcgaaat accactctac ccgcgaactc ggatgaccat      4440
     ttatccgtta acatttattc tatagagcag gacaattggc ttctaagttt acaaaaagcc      4500
     gaccccgata tctcgcgtat ttggcaaatt ctaaaaccag aagatgacct agagtgccgg      4560
     gacattcgca aaaattacgt tgttaaaaac cacgttgttt atagaaaaat agacgaccaa      4620
     ttacgccttg ttgtgccacg tagtgcgagg tggcaagtat gtcgcgctaa tcatgatgag      4680
     atagggcatc acggctattc taaaacgcta gaaaggatac aaagtaaatt ttggttcccg      4740
     aaattgagaa aatttgtaaa aaaatatgta acggcttgtt tagagtgcgc atacaataaa      4800
     gatactgcag caaaacaaaa gtctggacat ttgtacccaa ttgaaaaggt aaatatacct      4860
     tttcatactg tccacatgga tcatctcggg ccatttgttc gcagcaaaga tggtaatacg      4920
     cacattttga ccatagtcga cgctttcaca aaatatgtgt tcgtgagacc agtaaaagat      4980
     cttaaaacaa aaaccactac caaagtcctc gagaaaatat tttatgattt cggtattccg      5040
     gctaggataa taactgaccg cggtacatct ttcacgtcga cagcctttaa gaccttttgt      5100
     gagggacatg gaattaaaca tgtattgaat gcagtcgctt gtcccagagc caatggtcaa      5160
     gccgaaagat ttaaccagac cattcttaat tcattggcgg cacaaaattc ttttggccac      5220
     gagcgcgact gggacaagtg tctggggaaa attcaatggg gcattaacaa cactgtaaat      5280
     gcctcaacac aaaaaacggc aactgaagct ttgtttgggc tgaaaatgcg ggatgattta      5340
     gcgaataaac tcgatattgt agatcaaccc ttggcttcta atttacaaga acttagacaa      5400
     gacataagcc ataacataca gagggggcaa gaaaagatga aactaagaca tgataaaaat      5460
     agaattcctg ctgctaaata tgaagtcggt aacctggtaa agatttcgcg aaacaatttt      5520
     gccaatgatg ggaagagcac aaagcttttg tcaaaattca taggtcctta taaaattgtg      5580
     gaggttctag ggaatgatag gtataggata gccgatgtcc caggcttcaa taggacgggc      5640
     aagccctata agactgtgat agcagcagac aggatgagac cctggataca tataaaggct      5700
     ttagaggtac ataattcaga aaatagcagc tctagtgagc atagtgatga tcataatagc      5760
     gactgaacat gcacagggtc ttataacaaa tccatgtaat tattaactgt acacttttac      5820
     tactgtacat tgatttattt ggaatgtact aactacactt ttatcctatt aactattaat      5880
     tttcactgtg tttaaaaatg ttttgttact gtttacacat tttatttggc gaatgtcatg      5940
     atttgtttta agaaggtaga agaaacagca gcagttgaga ttcaacttgt ataaattgtt      6000
     gttatacttt taaattcctg cgtattattg tattgtgccg caggaagttt ttgttagggg      6060
     aaaaactaag tgtgatgaag atatataata taacaagcaa taatcctaac ataatagcaa      6120
     atgatgcact tgtataaaat ttataatcgt tagtaagtcg tgcgccagga gtcggcacga      6180
     tgtctgatgg ccgaa                                                       6195
//
ID   Gypsy-29_TrNi-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-361
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 186-186 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 361 BP; 117 A; 43 C; 64 G; 137 T; 0 other;
     tgtcatgatt ttttaaaata tatttctata attttatttc aaataataat aggtattaaa        60
     actttgattt ttaaatacgt ttttttttta ataaaataac ttttatgttt aatctattcg       120
     gttatcgata tcctgctgcc gcacgcccgc catttttttt ggttggacaa cacttagcgt       180
     ggcgggaagc tagtacttgc cggcgcggga aaacttggtt aattttaaaa acgaaaagga       240
     gacggatggt tgaactgaag aggaagtaat attttctgtt atgttataag taatacatat       300
     gtataaaagt atgcactaat atatgaaaaa ctaaattgaa gtgagttgct gttttatttc       360
     a                                                                       361
//
ID   Gypsy-29_TrVa-I repbase;    DNA;    INV; 5509 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5509
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 274-274 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           347..3865
FT                 /product="Gypsy-29_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H."
FT                 /translation="MSILRPSKLKVFTMPNSPVTEGATGTSFNMTSDQFMA
FT                 EFLRMRTTLETLQNAQLSTVNKLKDGDINAIPEFRGEPQILPQFIKICDEL
FT                 VRDFYVEGEPGNVQNTRLMRGILSKIKDRAQLQITTSTYENWKELKDILTE
FT                 FYGDRKSDKTLFIELSKFYQYPNETAIDFYNRLTYQLNSVISYMNTHSTLA
FT                 HKDFVTETALQVFLRGLRDPLGQYLKSRNPTSLAQALSLLNNEFQYESMWQ
FT                 QNKPNSQNSKPPGNEFQRQNPEKTKLVQQAVQSFNSLNNLPYPPQNQNRGF
FT                 SSSPNWNNQNQNFNSNSNRTYPNQNQDRNFQNYNQQRPSGSNNVPTNRPIA
FT                 MSGISHNTRFNQTHAVDTSKVVPVVSVASNNMEFEPPPQVYESEPSEMVSE
FT                 PEPEPEAGISQFFHISASCKDPDFILSSQHKGSLPYVMIPELNQAKFLVDT
FT                 GATTSLINPDIATRFFPNSIRLSPLEISTPHGSEISERCAYVPIPSIFKQK
FT                 GHLRLQLCKFHNFFDGLLGMDLITTFQGKINFRDSLFETPEAKISLLLHET
FT                 KPGMNKIICEVNTEQIMEIPVVAQGSSRVILPPAQYCKKVKIPACLTTVKN
FT                 GSTLCSMVKNSNQQLGIVPLKPLSVEPADSYFIHSDVQKEKAKIYYSNFHN
FT                 MSGNNGNSRIVDSLLRTKHLNSEEFDTIKNLTLDFQDIFYINGEPTSFTNT
FT                 IKHEIKPKDNEPVYTRNYRYPHVHKKEVHDQVNKMLDSGIIRPSYSPLSSP
FT                 IWIVPKKRNASGKVKWRVIIDYRKLNDKKINYKYPLPNITDLLDKLGRCQY
FT                 FTNLDLTPRFHQLKMHPNSIAKTVPGPENGHYEFLRMPFGLENASTTFQRV
FT                 MDNVIRGIQIDFCFFCFIQLDNVLIFSSSLQEHCIHLTHIFDRLRQFNLKV
FT                 RLDKSEFLKKEIDYLGHVITSDGVKPNPKKVEMVKTYPTPDTITKIKRFLN
FT                 LIGYYHKFIPEFAEIIRPLTSRLKKGTKTNVQDPDFSECFEFCKTLLRNDS
FT                 ILQYPDFSKPFNLTTNASNVALGAILSQVRVKSDLPIAYASRTLNDTESRY
FT                 SSIERELLAVVWAVKQFRPYLFGTKFALVTDLQPLVWLFSLKEPKSKLFRW
FT                 RLQLANYEFEIQQRNGAKIPHVGNLSQLELNMLPSNISVLGFTSNDNVSTV
FT                 YSSDDFIVPSSKSK"
XX
SQ   Sequence 5509 BP; 1588 A; 1250 C; 883 G; 1788 T; 0 other;
     ggcgcagtct aggtaggata cgcgaaaagt tctgattctc atcgtgattg tcagatcttt        60
     tttgtttcaa caattgatcg cggatcctct gccccctctt ccgaatttta gtgcgtccca       120
     cttttcggaa cttttctcgt tttctttctt tccggtcacc tttactcatc gacggtaaat       180
     gcatcgtgca tttcttctgt tactgtaagt gttgtgttct ggttatttct tttactattc       240
     tgaccatccc ttattactta ggtttttgtt tttaattttt cagttattct tgtcttttct       300
     ttgtgtttta ctattgtttt attgttacaa ttgacaaacg tgttgtatgt caattcttcg       360
     accaagcaag ttaaaagttt ttacaatgcc caattctcca gtcactgagg gtgccacggg       420
     tacctccttc aatatgacat cagaccagtt catggcagaa ttcttgcgga tgcgtactac       480
     tcttgaaaca ctgcagaacg ctcagctttc aactgtcaat aagttaaaag atggcgacat       540
     taatgccatc cccgaattta ggggtgaacc tcaaattctt cctcaattta taaagatttg       600
     cgatgaactg gtacgagatt tttatgtcga aggggaacct gggaacgttc aaaatactcg       660
     cttgatgcga ggcattttga gcaaaatcaa agatagggct caattacaaa ttactacttc       720
     cacttatgaa aattggaaag aattaaaaga tattttgacg gagttctacg gtgaccgcaa       780
     gtccgacaaa actctgttca tcgaattgag caaattttat caatatccga atgaaaccgc       840
     aatcgatttt tataatcgat taacttatca attgaactcc gtaattagtt acatgaatac       900
     ccacagtaca ttggctcata aggattttgt tactgaaact gcacttcagg tatttttgcg       960
     tggtttacga gatccacttg gacaatattt gaaatccaga aacccgacct ctttagccca      1020
     agccctgtca ttactaaaca atgaatttca atatgagagc atgtggcagc aaaataaacc      1080
     taattctcaa aattctaaac caccaggtaa tgagtttcag aggcaaaatc ccgaaaaaac      1140
     taaactagtt caacaagcgg tgcaatcatt caattctctt aataatcttc catatccacc      1200
     tcaaaaccaa aatcgaggtt ttagttccag tcccaactgg aataatcaga atcagaattt      1260
     caattcaaat tctaatcgga cctatccaaa tcaaaatcaa gatcgcaatt ttcaaaatta      1320
     taatcaacaa aggccttctg gtagcaataa tgttcctacc aatagaccaa tagccatgag      1380
     tggtatatcg cacaatacgc gatttaacca gactcatgca gttgatacat ctaaggttgt      1440
     ccctgtcgtc agcgttgcca gtaacaacat ggaattcgaa cccccgcctc aggtttatga      1500
     gtctgaacca tctgaaatgg tgtcggaacc cgagcctgag cccgaagcgg gaatttctca      1560
     atttttccac atatcagcct cttgcaaaga ccctgatttt attctcagct ctcagcacaa      1620
     agggtcgctt ccttacgtaa tgattcccga attgaatcaa gctaagtttc tagtggatac      1680
     aggtgcaaca acttctttaa tcaatcccga tatagcaacc agatttttcc ctaactctat      1740
     tcgtctttcc cctttagaaa tcagtactcc ccacggtagt gaaatttcag aacgttgcgc      1800
     ttacgtacct attccctcca ttttcaaaca aaagggacat cttaggctac agttatgcaa      1860
     attccataat ttcttcgatg gtttacttgg catggatctt attactactt ttcagggaaa      1920
     aattaatttt cgggacagtc tcttcgagac tcccgaagca aaaatttctc ttttactcca      1980
     tgaaaccaaa cctgggatga acaaaattat ttgtgaagtt aacacggaac aaataatgga      2040
     aatcccagta gttgctcaag gaagttcaag agtaatttta ccccctgctc aatattgcaa      2100
     gaaagtcaaa attcctgcct gtttgaccac ggtaaaaaat ggttccactt tatgctcaat      2160
     ggtaaaaaat tctaatcaac aactcggaat tgttccttta aaaccattgt ctgttgagcc      2220
     agccgacagt tattttattc actctgatgt ccaaaaggaa aaagcaaaaa tttattattc      2280
     aaatttccac aatatgtctg gcaacaatgg gaacagtaga attgtcgact ctttgctaag      2340
     aactaaacat ttgaattctg aagagtttga cacaataaaa aacctgaccc ttgacttcca      2400
     agacatattt tatatcaatg gggagccaac atcattcacg aatacaatta agcacgagat      2460
     aaaacctaaa gacaacgaac ctgtctacac taggaattat cgctatcccc acgtgcataa      2520
     aaaagaagtt cacgatcaag tcaacaaaat gttggactcc ggaatcatta gaccctctta      2580
     ttctcccttg tcgtctccaa tctggatagt tcccaagaaa cgaaacgcga gtggaaaggt      2640
     caagtggcgt gtaattattg attatcgtaa attaaacgat aagaaaatta attataaata      2700
     tccgcttccg aacataactg acttgttaga caaattagga cgttgccaat acttcaccaa      2760
     tctcgattta actcctcgat tccaccaatt aaaaatgcat ccaaactcca ttgcaaaaac      2820
     cgttcctggt ccggagaacg gacattacga atttttgcga atgccgttcg gattagagaa      2880
     cgcatctacc acttttcaga gagtcatgga caacgtgatc cgaggaattc aaattgactt      2940
     ttgtttcttt tgtttcattc aattagataa tgttcttatt ttcagtagct cattacagga      3000
     acattgtatt cacttaactc acatatttga tagattgaga caattcaact tgaaggttcg      3060
     actcgataaa tcggaattct tgaagaaaga aattgattat ttagggcacg tcattacttc      3120
     agacggtgtg aaacctaacc ccaaaaaggt agaaatggtg aaaacttatc ccacacctga      3180
     caccattaca aaaatcaaaa gatttttaaa cttaataggt tattatcata agttcatccc      3240
     ggagtttgca gagattatca ggcccttaac ctcacgcttg aaaaagggta caaagacgaa      3300
     tgttcaagac cctgattttt ctgagtgttt tgagttctgt aagactttgt tacgtaatga      3360
     ctcaattctg cagtatcccg atttctcaaa accattcaat ttaactacta atgcctccaa      3420
     tgtagctctc ggtgcaatct tatcacaggt tagggttaaa tcagatttgc ccattgctta      3480
     cgctagtaga acgttgaatg atactgagag cagatattca tcaatcgaac gggaactgtt      3540
     agcagtagtt tgggctgtaa aacaattcag gccttattta ttcggaacaa aatttgcttt      3600
     ggtcacggac cttcaaccat tagtttggct gttctctttg aaggaaccga aatcaaaatt      3660
     atttcgttgg agattacagc tggcaaatta tgaattcgaa attcagcaac gtaatggggc      3720
     aaaaataccc cacgttggca atctttcaca gcttgaatta aatatgcttc caagtaatat      3780
     ttcagtcctc ggttttacat ctaatgataa tgtttccact gtttattcat ctgatgattt      3840
     catcgtcccg agttcaaaat caaagtagtg accgattttg tctcacttca ttctatcaaa      3900
     gttcacttca ccccacactt cataccccat ttcaaatctt cactttcatc tcgattttca      3960
     ttcttttcaa atttccattt tccttttcgt ctcatttctt aatattttca ttctttcttt      4020
     gctttcagtc taacacataa taacaccccg ctgttttaga taattaaacc cttctattct      4080
     tttagtaaga aataactgtc ctgaacttcc cgactggtat tcctttataa cttctattct      4140
     tcaacttcag ttaaaccgca aaatcacccg aaccgaagaa ttgcgaattt cctcagtcag      4200
     ggaattagtt ggcttgctgg taaccttgat gacaccgaca aacgacgata taatgaaatt      4260
     ctcgaattat tcggggaaac tgagtggtga acttatgttg aaagaaaagc ttcagcttca      4320
     gcaacaagac tattccggtc attcttggta aattttgcct tgtctggtga cccacagttt      4380
     tgccgggcac ttacatccta cagttatctt gccttctgac ctccgtcggg atgttaaatg      4440
     tctttccaaa ttttataccg gaaaatattt ttataccaat tgctttcact gctcgatctc      4500
     cttttgagat cgacgattta ctcagaattt cttgctcagt catttttgat aaaataatat      4560
     attttgtttc tatttcaact aattacaacc aaacttttag tcaattacat ctcttatcag      4620
     tccccgtgct tgtaaggtca gaatatgtga ctgcgatacc agaataccgg cacatgcttc      4680
     gagacgatga cacctctaca ttctacgctt tgtcacagcc gtgcatccgt atcaacaggg      4740
     ttatcaattc caagatgtca cccactatca ccttcgcctt gccttgttgc cgtctctacc      4800
     acccatgata ctgctacctg ctcgttcctc accgtccatc tcgactccag ctacgtagaa      4860
     ccaatttcga aaacggatca atttatttca tttacctcat tctgaaatca tcactttttc      4920
     ttgttctagt atttctgaaa atcgttcttt atgtggcatt tttctctatt ccaatacttt      4980
     gtgctctgtt atttttctca atatgacact cccaaaatct ttagtctcca ctaactgtgt      5040
     cattctctct cattttctat cacacgaatt gcacgtgatt ctattttgcc actcgatatt      5100
     tctctctcta atcttaaaat ggatctcttg cctcaattac tccatagctt aacagtgcct      5160
     attaagccca gtttcttttc gtcgccgacc cacttttatt ttctctattc tggcataatt      5220
     ctgtttatct ttctattttt aatcttgaat cttttgtctc tacagaaata ccgcggtctt      5280
     tatcgccgct ttccccctgc cgctgtgcaa ccttctgtca ctctgccagt gccagccgct      5340
     caacccatgg ctcaatcttt gtctctcttt cccccgagct tcttgccgcc cgcatctggt      5400
     tgacgtcaca cttcttggtt gctctctttt tggaacatcc cggtttcacc ttgatcttcc      5460
     atcttggaac atcccggttt caccttgatc ttccctcttc ggatggaga                  5509
//
ID   Gypsy-29_TrVa-LTR repbase;    DNA;    INV; 593 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-29_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-593
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 333-333 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 593 BP; 123 A; 174 C; 90 G; 206 T; 0 other;
     agttatgttt tcgcttgccc tctgttccat ctggcaacct cgactcgttc tcgcttgctc        60
     actcttccat ctggcaacct cgactctgtt ggactcatgg cacgcgcctc tattgccgaa       120
     caacgacgca ctctcttcac gatgcttatt ttcatctatc ttgcgactcg tgccaattca       180
     gcgctaaccc ttggcctacc tcacctttgc catccgaatt ctgctggacc accgagtttt       240
     cgccaccaaa tttgtctatt cgtccactct gtcaacctaa tcttcacatc tgacgtcagt       300
     ccatttgcat ctcgcctaat taagcgacat cagcttattt tcggtttgac tttcggctca       360
     gtcgccaaag tcaaacgcct cccgaaaact ataaaacgtc tgacctctat actttcggca       420
     ggcattcata ttaggactct cctagtgagt tgtttccctt ttcactgtta gaatcaaccg       480
     ttgaaattgt acttacttaa taaaccccgc tacttgttac taattgtaac tatttcgtct       540
     tttctcattt ttctctattt ttccgattac gtgttttcaa cgtattcgtt act              593
//
ID   Gypsy-2_AA-I repbase;    DNA;    INV; 4208 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AA_;
KW   Gypsy-2_AA-LTR; Gypsy-2_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4208
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 973-973 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3170-3628] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(20..2374,2378..4159)
FT                 /product="Gypsy-2_AA-I_1p"
FT                 /translation="MANPGEIQAGGDGAAAGVPAVLPPPTFAIESFDKRKL
FT                 KWMRWVERLETAFLIYGVADVQMKTHFLLHYMGSETYDVICDKVAPDSPRT
FT                 KTYQEIVTTLDDFFSPQPLEISENFRFKCRRQGDKDAASADETVDEYLVAL
FT                 RRIAVTCNFGAYLETALRNQLVFGIKRNDIRSRLLERRELTLKDARDIAVS
FT                 MELSRKGGAAIEGSSTRQEVHAVQHPAGKKEKQNAKNKSAGKSANDGSCYR
FT                 CGEKSHFANACKHKQTVCSYCKLTGHLAKVCLKKSAAAKSDSRSTNKSHSV
FT                 QTNYVDQSGDRQRPERVEVREVCTVESSSRCKKLLMDVYVNGKCVRFEVDT
FT                 GSPVSIISAEDQNRFFPGARLCKSDTDLVSYCNTSIDVLGVFNASVEYNGK
FT                 TMKLPLYVVNSGKHPLLGREWLSEMSVDWSCVFQGPIAVSAIAATASPCRD
FT                 VALRALLEKFPKVFDASIGRISNVQANLPLKKDARPVFLKARKIPFNMLKT
FT                 VEDELEKLVAEGVLTKVNSSNWATPIVPVKKSQNRVRICGDYKQTVNPNLI
FT                 VDKHPLPTVDELFASLAGGKKFSKIDLVQAYLQLEVAPEHREILTLSTHRG
FT                 LYRPNRLMYGVASAPAIWQRQMEAILQGIEGVSVFLDDIKITGENDEVHLR
FT                 RLEEVLRRLNECGIRVNKDKCEFFVDNIEYCGYLIDKDGIHKIRKKVQAIQ
FT                 DMPRPKNVDEVRSFVGFINYYGRFFQNLSTVLYPLNNLLKNDVPFRWTKQC
FT                 EDSFRKVKEQMQSDNCLVHYSPELPLLLATDASPGVGAVLSHVYPDGTERP
FT                 IQFASQTLSRVQQKYMQVDKEAYAVIFGVKKFFQYLYGRKFTLLTDNQAIS
FT                 KIFGEHKGLPVMSALRMQHYATFLQSFDYQIRFRKSSNHSNADAMSRFPLE
FT                 KTDPENEIEESDVVELSQIDTLPLTAAELGQVTAEDQTVQKLLQGIKHGQL
FT                 VDAKDRFGVEQHEFSLQKGCLLRGIRVYVPAALRKRVLEELHSAHFGTTRT
FT                 KSLARGYCWWPGLDRDIEEMVSNCADCQSVRAEPTKMDLHCWETPSAPFQR
FT                 VHVDFAGPFMDTYFFIYVDAYSKWPEVQICRSTTAECTVSMCREIFSKFGI
FT                 PSILVSDHGVQFTSEVFQRFLKMNGVVHKMGAPYHPATNGQAERYVQTIKQ
FT                 KLKALKCSKSQLNLELCNILLTYRKMIHPSTGKSPSMLVFGRQIRSRLDLL
FT                 LPKNETSSKADIIVRQFLDGDRVRVRDFLSKDKWKFGRIAEKLGKLRYAVR
FT                 LDDGRIWERHIDHIVGVGADLQDVSVDTPQEEEFIERYEPNLTASSAVDSA
FT                 ADAVVPALPQAETTNATPVISCPNAATAPALAPTPERFASTEAGRSESTVP
FT                 LRRSSRTVKPPQRLNL"
XX
SQ   Sequence 4208 BP; 1087 A; 981 C; 1153 G; 983 T; 4 other;
     atagttctgg cgacggagga tggcgaatcc cggtgaaatt caagctggcg gagacggtgc        60
     tgctgcggga gttccggctg ttttgccccc accaacgttt gcgatagaat cgttcgacaa       120
     acgtaagtta aaatggatgc ggtgggttga gcgtctcgag accgctttcc tcatctacgg       180
     agttgcggac gtgcagatga aaacgcattt tcttctgcat tacatggggt ccgaaaccta       240
     cgatgtcatt tgcgacaagg ttgccccgga ttccccccga acgaagacgt accaggaaat       300
     cgttacgacg ttggatgact tcttcagccc gcagccgctg gaaatcagcg aaaattttcg       360
     cttcaagtgc cgccgccagg gcgacaaaga tgccgcatct gccgacgaaa cggtggatga       420
     atacctggtg gcccttcgga ggattgcggt tacgtgcaat ttcggtgcgt accttgagac       480
     ggcgttacgc aaccagcttg tgtttggcat caaacgaaac gacattcgga gccggctgct       540
     ggagaggcgg gagctaacgc tgaaggatgc tcgcgatatt gccgtgagca tggagctttc       600
     acgcaaagga ggagctgcga ttgaaggtag ttcaaccagg caggaggtac atgcagtgca       660
     acacccagca ggtaaaaaag aaaagcaaaa tgcgaaaaac aaaagtgcgg gtaaaagtgc       720
     gaatgacgga agttgctatc gttgcggtga aaaatcgcac ttcgcgaatg cgtgcaaaca       780
     taaacaaacg gtttgctcgt attgtaaatt aaccgggcat ctcgcgaaag tttgcctaaa       840
     gaaatctgcc gcggcgaaat ccgattcacg gtcgacgaac aaatctcatt cggttcaaac       900
     gaattacgtg gaccaatctg gcgatcgtca acgccccgaa cgtgtggaag tgcgagaagt       960
     ttgtacggtc gaatcgtcgt cgcgttgcaa aaagctgcta atggatgttt acgtgaatgg      1020
     maagtgcgtt cgattcgagg ttgatactgg ttcgccggtc agtatcatca gtgcagagga      1080
     ccagaacagg ttcttcccgg gtgcgcggtt gtgcaaaagc gatacggatt tggttagcta      1140
     ctgcaatacc agcatcgatg tgcttggtgt cttcaacgcg agtgttgagt acaatggaaa      1200
     aacgatgaaa ttgccgctgt acgtggtgaa ttccgggaag catccgctgc tcggccgcga      1260
     gtggctgagc gagatgtcgg tggactggag ctgcgtgttt cagggaccga ttgctgttag      1320
     tgcgattgct gctactgctt ccccgtgccg cgacgttgct ttgcgggcgt tgttggagaa      1380
     attcccaaag gtgttcgatg cctcaatcgg aaggatttcc aacgttcaag ctaacctacc      1440
     actgaagaag gacgcacgac cagtgttcct gaaggcacgg aaaataccat tcaacatgct      1500
     taagacagtt gaggatgagc tggagaaact ggttgcagaa ggcgtactca cgaaagttaa      1560
     ctccagtaac tgggcaacgc cgattgttcc cgtcaagaag tcgcagaatc gcgtgaggat      1620
     ttgcggagac tacaagcaaa ccgtgaatcc gaatctcata gtggacaagc atcccctgcc      1680
     tacggtggac gagctgttcg cttcgctagc tggaggaaaa aagttcagca agattgatct      1740
     cgtccaagcg tacctgcaac tcgaagtggc accggaacat cgggaaatac tcacgctgtc      1800
     tacacatcgt ggtctttatc gtccgaacag gctcatgtat ggtgttgcgt cggctccggc      1860
     catctggcag cgccaaatgg aagccatact acaaggaata gaaggcgtta gtgttttctt      1920
     ggacgatatt aagataacag gtgagaacga tgaagttcat ttgcgtcggc tggaggaagt      1980
     acttcggcgg ctgaacgagt gcggaatacg agtcaacaag gacaagtgcg agttcttcgt      2040
     ggacaacatt gagtattgcg gatacttgat tgataaggac ggcatccaca agatccggaa      2100
     gaaggtgcaa gctatccagg atatgcccag accgaaaaac gtggacgaag ttcggtcgtt      2160
     cgtcggattt attaattatt acggacggtt cttccagaac ctgagcacgg tgctgtatcc      2220
     tctgaacaac ttgctcaaga atgacgtacc gttcagatgg accaagcaat gcgaggattc      2280
     cttcaggaaa gttaaggaac agatgcaatc cgacaactgt cttgtccatt attcaccgga      2340
     gttgccacta ctgctagcta cggacgcttc gccctwcgga gtaggggcgg tactaagcca      2400
     cgtgtatccc gatgggactg aacgtcctat tcagttcgcg tcccaaaccc tcagtcgtgt      2460
     gcagcaaaaa tacatgcagg tggacaagga ggcgtacgcc gtcatatttg gagtgaagaa      2520
     attcttccaa tacctttacg gccggaagtt caccctgctt accgacaatc aggctatctc      2580
     gaagatcttc ggggagcata aagggttgcc ggtcatgtct gcattaagga tgcagcatta      2640
     tgctaccttt ttgcagagtt tcgactatca aatccggttc cgtaagtcgt ccaatcactc      2700
     aaatgctgat gctatgtcca gatttccgtt ggagaaaacc gatcccgaga acgagataga      2760
     agaatccgat gttgtggagt tgagtcaaat cgacacacta ccattgactg ctgctgagct      2820
     aggccaagtt ackgcggagg atcaaacggt gcagaagctt ctccaaggaa tcaaacacgg      2880
     acaactggtg gatgcgaagg atcgcttcgg agtagaacag cacgagttct ccctgcaaaa      2940
     aggatgcttg cttcggggaa ttcgagtkta cgtgcctgct gctctccgga aacgtgttct      3000
     ggaggaatta cattctgctc acttcgggac aactcgtact aagtcgttgg caaggggata      3060
     ttgctggtgg cctggattgg accgggatat agaggagatg gtatcaaact gcgccgactg      3120
     tcagtcggta cgtgccgagc caacgaagat ggaccttcat tgctgggaaa ctccgagtgc      3180
     tcctttccaa agggtccatg tcgactttgc tggtcccttt atggatacct acttcttcat      3240
     ctacgttgac gcttacagca agtggccgga ggttcagatc tgcagatcca ccacggctga      3300
     gtgcaccgtt agcatgtgtc gcgaaatctt cagtaagttt ggcattccgt caattctggt      3360
     gagcgaccat ggcgtccaat ttacatcaga ggtattccag cgattcctga agatgaacgg      3420
     tgtagtacac aagatgggtg caccgtatca cccggcaacg aacggacaag ctgagaggta      3480
     cgttcaaacc atcaaacaga agttgaaggc gttgaagtgc tccaagtctc agctgaacct      3540
     ggaattgtgt aacatcctac taacttaccg caaaatgatt catccgtcaa ctggtaaatc      3600
     accctcaatg ctcgtgttcg gtcgacagat tcgatcaagg ctagatctgc tacttccgaa      3660
     aaacgaaact tcaagcaagg cggatatcat cgtgcgtcag ttcctggatg gagaccgagt      3720
     acgtgtgaga gatttcctgt ccaaggataa gtggaagttt ggacggattg ccgagaagct      3780
     cggaaaactg cgatatgctg tacgtctcga cgatggacga atctgggagc gtcacatcga      3840
     ccacatagtc ggtgtgggcg ctgatctaca agacgtttcg gtggacactc cacaggaaga      3900
     ggagttcatt gaacgatacg agccgaactt gactgcttct tctgcggtgg attcagcagc      3960
     tgatgcggta gtgcctgcgc ttccacaagc agaaactacc aatgcgacac cggtgatttc      4020
     ctgccctaat gctgctacgg cgccggcgct tgctcctact ccagagcgct ttgcgtctac      4080
     cgaggctggt cgatcggagt ctactgtacc tctacgacga tccagtcgta ctgtgaaacc      4140
     tccccaaaga ttgaatttat gattttgttg aagtattaac tgtattttct tttgacaaag      4200
     gggagaag                                                               4208
//
ID   Gypsy-2_AA-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AA_;
KW   Gypsy-2_AA-I; Gypsy-2_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-254
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 974-974 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 254 BP; 80 A; 50 C; 37 G; 87 T; 0 other;
     tgttatatct tgaccttaaa ttacattaca taaaccttgc tactttttat acaaacctac        60
     attcgtatat cttgatcgcg cataccttca aaatacaatg tctttgtttt tccttctgtg       120
     cgatcagtta gaacataacg gtatttgctc gccattatga gcgcacgagg cgctgaagaa       180
     atcattatta atttagaata ataaagtgat taaacaagta aaactattgt gagtactttc       240
     actcggccgt caca                                                         254
//
ID   Gypsy-2_ACe-I repbase;    DNA;    INV; 5600 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-5600
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 728-728 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1910..2566,2570..3751,3936..4739)
FT                 /product="Gypsy-2_ACe-I_1p"
FT                 /translation="MIIVFWVSIFLNYLIYKIFLIAFFSDQFLILTLILNA
FT                 RVESIAVAGVPSNLTLFEESSRCLGNLEKENFASFLNEFYDVFSHDVIAGN
FT                 CKFGEHVINVKDSSPIKQVPRRIPLQMRKEVDKIIVEMERQGIIEESTSPW
FT                 ISPVVLVKKKDGTIRFCVDYRKINAITIKDSYPLPRIDDILDQLSGNNWFS
FT                 TLDLKSGYWQIKIRSEDKEKTAFSIGNGLRFKVMPFGLCNAPATFERTMEQ
FT                 ILKGYLFKICLVYLDDVIIFDKSFEEMLSNLEKIFHRLREANLKINPKKCV
FT                 FFNKKIKYLGHIISAEGIATDPEKISAVKDWPIPQNKKHLRSFLGFCSYYR
FT                 KFVKGFSSLAKPLYVTENQTKFVWEKKHQGSFNDLKRALTSPPILAFPETE
FT                 GEFILDTDASNEGIGAVLSQKDGIERVIAYFSQTLSKAERNYCVTRRELLA
FT                 IVRSVKSFHHYLYGCKFLIRTDHISLKWLLSFKDLEGQLARWMERLQQYDF
FT                 EVDYRKGLSHKNADGLSRRPCASDQCHCYCANVELKEVAKQESYVRRIFAE
FT                 DSCENWRKEQMEDPCICLFLSKKEAGVGRLHGKKRRVMFLPRCIGPIGILS
FT                 KLRMVYSTRNGKPLILKKVLPVKENLLYRHIMWEPHSKEFNWTFSAPLPIT
FT                 SAGNRYLLVAVDCFTKWVEAFPLKNVRSKTIAETFLNQIISRHGVPLEVHT
FT                 DQGRNFESRIFRELSRLLGMKKTRTTALHPQSDGQVERQHQTILNYLAKFI
FT                 SENQKDWDRWIPLYLLAYRSSKHETTGMTPAEVYFAQDLRLPTDLLRGNPP
FT                 KTEEVGSPEDYLGKVKRKLEEIHEGVRKRIDIKSSRTKTWYDLKARFILRR
FT                 DRKCGYIIPEERRGELPSCRAIGKDHIL"
XX
SQ   Sequence 5600 BP; 1768 A; 1024 C; 1329 G; 1477 T; 2 other;
     ttttgggggc tcgtccgaga tcgtgtaatg attcgttcgc caatcattac gaggaaaaga        60
     gctcaaatgg agagtccgca ggaaacgtca gcacagcgag aattggagca aacgacggaa       120
     gcgacagttc agcgagccgc ttcagaggaa gctttttccg tcgcatcgac gcttcaagct       180
     gttctacaag aggtacaata gctgcgtgag gaacaacgtc gtacaagagc cgaatttacg       240
     gagacgttgc gacagcggga cgcagaggtc gcacaacagc agcaacgaca ggaggaattt       300
     gcggcgacgt tgcgacaacg ggatacggag attgcgcagc ttcaggaaaa actgcgaggg       360
     attcctgcaa accagctaag tctctctaat aatgtttaca ataataatcc accctcccgc       420
     gtcgatggtc attccgttgt tgccgcgaat gacgttgtgc atgccaatcc tgtcgcgagt       480
     gtcgtcaatt tccctgattc cgtcgcgagc ttgtcaatcg cacgaatcct gtcgcgagcg       540
     ctgccaactt tattaactcc gatgtaaatg tcggttgcac aaatattgtg aatcatcgtg       600
     tattgtccgc gcattcggtc gggagtgtcg atcgtttcga tccgcctgcg ctgcttcgcg       660
     ggggggggga aactgaaacc agacatttac gacggaagtg cgcccttgcg cgagtttttc       720
     gcgcaattca atctcatcgc ccgcgcgaac cgttgggaag aggaaacaaa gaccgctgtc       780
     ttggtttcgt gtttgcgagg caaagcgcgt gcagtwttgg aaagcatgca aaatttagag       840
     aacttacaat tcgaagagtt aaagtcgaaa ttggagatgc gtttcggaga gacgcattcg       900
     ttacaaaact attattcgca atttactaat agaaaacaga aattcggaga aaatatcgct       960
     tctttgggtt ctgacataga aagattatca caattagctt atccagagtg tcccgattcg      1020
     gttcgcgata aaatcgcatg cgcacaattt gtttccgctc tttccgacgg attcgtaaaa      1080
     agggctctcc aaatggagag gataacgtcg ttaaggatag caatcgaaag agggaaggca      1140
     attaaattga ttcaagaaaa taattttcaa cataaaaaag aaaataattt aaatttcgaa      1200
     agaaaacaag aaaatgattt tattaaaaaa gaaaagagtc aaactgaaga aaaaaatgga      1260
     gagagagaag ggaacaaatc taatggaaat aaatttaaaa gatttccaaa gaataaaaat      1320
     tttgagggga atagaaataa taaagaatgt tgggaatgtg gaaaggaggg gcatttccgt      1380
     tctgagtgtc ctggcaaagc gggaaacaag gaatagtcga gctttacggg gaaggctcga      1440
     ctgaaataaa agaattcccg aaaaatattt atcatttgaa tggcttatgc tttggtgaca      1500
     ctaaagataa gccatgtatt tgctatgata attgttgtgc taatctacat tctttcagaa      1560
     aatattctta ttctactaaa aataaacaat gttttaataa ccgatgtatt aatctttata      1620
     ctgttgtatt aaccaatgtt ctttcaggaa aaatagaatt aagaataacg tgaaagattt      1680
     ttgttatgaa ggcaaagtta atgataaacc ttgtcttctc agaattgata cgggctccga      1740
     tatttcaatt ataaatagta attttgttga atcgtgtaaa ccgaaaatta taattgacaa      1800
     ctgtaatgtt aaatatacgg gaacaagtta ccaatcagat acaaaaccat agtaaaagtt      1860
     cgacttgcaa aatactgtgt tgagatacca atgttaatag ccgaaataaa tgataattgt      1920
     attttgggtg tcgattttct taaattactt aatttacaaa atatttttga ttgcattttt      1980
     ctcggatcag tttctgatat tgacactgat tttaaatgct cgcgtagaaa gtattgcggt      2040
     tgctggagtt ccgtcgaatt tgacgctttt tgaggagagc tcgcgctgtt tggggaacct      2100
     cgaaaaagag aactttgcca gttttctgaa cgaattttat gatgtattct ctcatgatgt      2160
     tattgcgggg aattgtaaat ttggggaaca tgttattaat gtgaaagatt cttcccccat      2220
     caagcaggta cctcgtcgta tccctttgca aatgagaaaa gaggtggata aaattattgt      2280
     ggaaatggaa agacaaggga taattgagga atccaccagt ccatggatct cgccagtggt      2340
     actagttaaa aagaaggacg gtacaataag attctgtgtg gattatcgca aaattaacgc      2400
     aattacgata aaagactctt atcccttacc aaggatagat gatatactcg accaactatc      2460
     aggtaacaat tggttttcta ccttggattt gaaaagtgga tactggcaga ttaaaattcg      2520
     ttcagaggat aaagaaaaga cggctttttc gattggtaac ggattgtgac ggttcaaagt      2580
     catgcccttc ggtctttgta atgcccccgc tacatttgaa cgtacaatgg agcagatttt      2640
     gaaaggttac cttttcaaaa tttgcttagt ttatctcgat gatgtgatta tttttgataa      2700
     aagttttgaa gaaatgttgt caaacctaga aaagattttc catcgtttga gggaagcaaa      2760
     cttgaaaatt aatccaaaaa aatgtgtttt ctttaataaa aaaattaaat atttaggtca      2820
     catcatatca gcggagggca ttgctacaga tccagagaaa ataagtgctg tgaaggactg      2880
     gccaatccct caaaataaaa aacatttaag gagtttcctt ggattttgct catactatcg      2940
     caaattcgta aaaggattct cttcgttggc aaagccgctt tatgtaacag aaaatcaaac      3000
     taagttcgtt tgggaaaaga aacaccaagg ttcttttaac gatttaaaac gagctttaac      3060
     ttctccgccg atattagcat tccctgagac ggaaggggaa tttattctag atacagacgc      3120
     gtcaaatgag ggaattggcg cggtcctatc gcagaaggac ggtatagaaa gagtgattgc      3180
     atatttcagt caaacattga gtaaagctga aagaaattat tgcgtcacgc ggcgtgaact      3240
     tttagccata gtacgatcag tgaaatcttt ccatcattat ttgtatggat gtaagtttct      3300
     aattcggaca gatcacattt cgcttaaatg gctgctgtcg tttaaagacc tagagggaca      3360
     gttggcgcgt tggatggaaa gactacaaca atacgatttc gaggttgatt atcgtaaagg      3420
     tctttctcat aaaaacgcgg acggattgtc gaggcggccg tgcgcgagtg atcagtgcca      3480
     ttgctattgt gctaacgtgg aactaaaaga agtcgcaaag caggaaagtt atgttagaag      3540
     aatttttgca gaagacagct gcgaaaattg gcgtaaggag caaatggaag atccctgcat      3600
     ttgcttattt ttatcaaaaa aagaagcggg cgtgggacgt cttcatggca agaagcggcg      3660
     agtgatgttt ctaccaaggt gtattggtcc tattgggatw ctctcgaagt taaggatggt      3720
     gtactctaca agaaatggga agcccctaat ctgaagaaaa cgatcttcca attaattgtg      3780
     cccagaaagc tcatagcaca aattttggaa gagctacata attctcctgc aggtgggcac      3840
     tttggcatca ataaaacgct tgacaaagta cggaggcgat tttattgggc aacaggatgt      3900
     ggaagaatgg tgcaaaacgt gcaagatctg tttagctaaa aaaggtcctc ccggtaaagg      3960
     aaaatctcct ttacagacat ataatgtggg agccccattc gaaagaattc aattggacgt      4020
     tctcggctcc tctaccaata acttctgctg gaaataggta tttgctcgtc gctgtcgact      4080
     gttttactaa gtgggtagaa gcttttccgc taaagaatgt cagatctaaa actatagcag      4140
     aaacctttct aaatcaaatt atttccaggc acggagtacc tctagaagtc catactgatc      4200
     aggggaggaa cttcgaatcg agaatttttc gcgaactgtc acgcttacta gggatgaaga      4260
     aaacgaggac aaccgctttg cacccacagt cggacggaca ggtagaacgt cagcatcaaa      4320
     ccatcttgaa ctatttggca aaatttatct ccgaaaatca aaaagactgg gatcggtgga      4380
     ttccattata tctgctggcg tacagatcat ccaaacacga aactactgga atgactccag      4440
     cggaggttta ttttgctcaa gatctccgtc taccgactga tttgttacgc ggtaatccac      4500
     caaaaactga ggaggttggt tctccggaag attacttagg aaaagtgaaa aggaagttgg      4560
     aagaaattca tgaaggagta aggaaacgaa tagatatcaa atcttcacga acaaaaacct      4620
     ggtacgatct taaagccaga tttattttga ggagggacag aaagtgtggt tatataatcc      4680
     ccgaagaaag aaggggagaa ctcccaagtt gcagagcaat tgggaaggac catattttgt      4740
     agttaagaaa cttagcgatg ttgtatactg tatctgcaag tcgaacaagc ataaaaataa      4800
     agttgtacat tcggatagcg ccttatttag aaagacgttt aggagaaacg agctaaaaag      4860
     gttaacaaat cggagcccta tcacttgaaa agaattgtaa tcttatggtg taagctgcgc      4920
     gagttatttt tctttcttag ttgcagagtt cacgttcgcg cagcacataa cgcggtttcg      4980
     gacggagagg atctccccag gggcttcggt gaaatcgttt tggacgcctc acagccagtc      5040
     cagcgggctc atcttccacg aaatcggaag ttatcaacga acgcgcttca accgtgcggc      5100
     cctacatttt ttttaagaag accgcctcgc ccgcggtttt tgaaccgtga tttttccgtg      5160
     ggacggaggg cgaatgccga ggcggggatt gggggcagag atactgcggt acatcatttt      5220
     ttttgtttcc ccccccccct ttccgaaaag agaagaacca agagcgcaag gcctcaagag      5280
     aagaggcaag aggatcctgg cgttcccttc atgaagacgg ggggatgccc gagcgggttt      5340
     cgtcctacgg gggagtagct atcctccggg gagaaactga agaggggtcc tgcccggaag      5400
     gagaagaagg cctcaagaat aaacctcgag aggaaagtcg gacctcaaga ctcaaggaga      5460
     ccaaagctca agaaaactgt tgcagcagca cagtagggag caggaaattg gtcaggaggg      5520
     agctccgaat tcctttgaga ggccaacgtt cttggaagaa ccataattgt cgggacgaca      5580
     atttaagaga aggggggcag                                                  5600
//
ID   Gypsy-2_ACe-LTR repbase;    DNA;    INV; 325 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-325
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 729-729 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 325 BP; 54 A; 88 C; 87 G; 96 T; 0 other;
     tgttacgccc gtgccggccg acaccgtaga tcgccgctcg tgaagtcctg aaagtcgcgt        60
     tgcccagcga cacgcggctc tgttatttaa caagatcggc agatttggac gtgagccgtc       120
     gctgcgctcg gacgtgtctc tcgatccgct tattctctca tcgttcgtgt gctctgagct       180
     ttacgtgtgt gtgtgtcctg tgttcatttc aaaataaact ctttttcttc tttctattat       240
     aatccgtgtt gttcatttct gcgggcggga gtgcgtgaac gcgttcgcga gaacgtctcc       300
     gcgagccgga cgctcggacg taaca                                             325
//
ID   Gypsy-2_AEc-I repbase;    DNA;    INV; 4871 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AEc_;
KW   Gypsy-2_AEc-LTR; Gypsy-2_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-4871
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 661-661 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2172-2693] - Reverse transcriptase
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2214..3827
FT                 /product="Gypsy-2_AEc-I_1p"
FT                 /translation="MVQKKDGSWRICGDYRRLNAITVPDKFPVPHLHDCSS
FT                 NLRGKVIFSKLDLHQAYNQIPVAPEDIPKTAVVTPFGLFEYKFMTYGLRNA
FT                 SQTFQRQIFRALGDLEFVFAFIDDILIASTSLEEHEAHLRIVLQRLKKFYL
FT                 RLNVDKCEFGKQELEFLGFTINSEGCKPTLDKVQAIREFPRPNTIVELRRF
FT                 LGLVNFYRKLLHNAATVQAPLNEYLRDSRKNDKRPIIWTPAAEEAFNKCKE
FT                 SLANATILSHPSDAAETRLVCDASDFAIGAALEQRLDDSWKPLAFFSRKLS
FT                 SAQQNYSAYDRELTAIAEAVKYFRYFLEGRNFKIVTDHKPLIYAFMQRSEK
FT                 ASPRQQRQLSFISQFTTRIEYLSGNDNIVADSLSRIEAIRLPAEIELNELA
FT                 QQQEQDEELRSIRESPEFPLTMKRIQWGPTHTTLYCEMTGEAIRPYIPASL
FT                 RDRVFHLFHDAAHPGPKVTDRVIRQRYVWPNMHRDIAKWCKNCLDCQQSKI
FT                 TRHVQLHPEKFVAPDGRFEHVHMDLIGPLPESDGYRYCVTMH"
XX
SQ   Sequence 4871 BP; 1277 A; 1252 C; 1226 G; 1113 T; 3 other;
     ttggtgaccc cgacgtgatc gaggtcgaaa ggccgacgtg atcgagagga agaagcgatt        60
     gaccggtaac cgtcgttcga gcaacatcga aacgagcagc agtgcacatc gccgacgtcg       120
     tagccgacaa ggaggctcat cgccgacgcc gtggccgaca aggaggccca tcgccgacgt       180
     cgtgagcagc aggaggccca tcaccgatat cgtgaccggt cgcaaggccc catcgctgag       240
     gccggggccg gcggaaaagt ctcgccgtcg gaagcaccgc agggacatat ccaacgacag       300
     gcgcgcagcg tgccgcctcc gtgggaaccg gacgggccag cccaggagcc ggcgttcagg       360
     acgccatcgc cgtcgccgcc attgtgacct gtgaaggacg acatcgccgc cattgtgacc       420
     agtgaagcgc gtcgtcgccg ccattgtagt cgggcaagtt gcgtgcgcag tgcgtcagtt       480
     tttagcgcgc gtaatccggc agaacaggaa agtagatcct ccgcgttttc ttcgcgaggt       540
     caacgcatga acgttaatta acgatttctc catttttgac agattagtat taagcgatcg       600
     acgttttaca tagcgcgcgc gtaagcggtt agtatttaag gccgttagga aatactgatt       660
     gttcgcgagc ttcgacacgg tagacgtgta gtcatggctc ctcccaccta tgaggaattg       720
     caggagcagg tggtgcagct gcaagcggcg cttcagcaga gcaatgtcgc gcgcgtggat       780
     tcatataggg ttccgaaaat tccgccgttc ttaatcaaag atccggtgat atggttcatt       840
     caagtcgagg ccacgttcga ggccgcacga atcacagagc aaaagactaa ggcgcatcac       900
     gtgattatgt ctttggacgc cgaagccatc gcgtgctgca gagatctcat cgcggagccc       960
     gatgagaacg aaccatacac caaattaaaa cagcgtatta ttgaaaattt ttcagcgtca      1020
     gcagagagtc aactgcgaca actaataaaa ggccaagtgc ttacgtcagg gaaaccgtcg      1080
     cagatcctca gtcgactccg caacttgaac actgacaagc gatgtgacga cgccgtaata      1140
     aaaaccgtgt tttttgaaca cctatcgccg cacattagag gcattcttgc gacttccgaa      1200
     agcacggatc tggacaagct agccaaaatg gcggataaaa tagctgagac cgcgggtgac      1260
     tctgcgcagt gtgccgccac atcgttgtca gaatcgaagc cgtccgactt agaagctaag      1320
     atggaccgtc tggccgccga kgtggccgcc ctcgcggctg aggtcgagcg gtccagcaga      1380
     tctcaggcga gagacggggc aaacaaaaat cgtaagcgtt ccaaaagcag aagctctcgt      1440
     gtctgctggc cgcatcgtac tttcggggcc caggcgcgag tttgtaaggg aaccgacaaa      1500
     tccccgtgtg attggccgaa gcccaaggct ttaacggacg ggaaggcggg ggaatagaat      1560
     cgtctgccac cgaggagaca ggtatggcgg gcgtcgattc ttctgtccgt ctccacatcc      1620
     gcgatcgagt caccggagag ctattccttg tggatacggg ggcggaaatt tcgctgcttc      1680
     ccagcasata cgcgaagaac aaaactccga ccaatttcaa gctttacgcg gcaaacaata      1740
     cgcgtataga cacgtatggg gagtcgttcc gaacgctaca tttagggata cgcccgctca      1800
     catggaattt ctgcgtagca tcagttccgt acccgattat tggggccgac ctgattgcac      1860
     attacggtct ccttccggac cttaaaggtc gcagactcat cgattcacaa aacaatgtgt      1920
     acgtgtcggg cattgtcaaa tcggtaccac agcttgccat tagcacggtc aatcccagta      1980
     cgaaattcgc gagcatctta tctgaatttc cggaggtcac cggtttagaa caggcaactc      2040
     cgaattgcag tagcgatgtt cgtcatcata tcattaccac gggcccgccg gtagccgagc      2100
     gccccaggcg gttaagtccg gtaaaattaa aagcagcaaa ggctgaattt caacggctag      2160
     tcgaagccgg tatatgccgt ccgtccagta gtccatgggc aagtcccatt cacatggtac      2220
     agaaaaaaga cgggtcatgg aggatctgcg gcgattaccg tcgtcttaac gcgatcaccg      2280
     tgccggataa atttcccgta ccacatttgc acgattgctc ctccaacctg cgtgggaaag      2340
     tcattttctc taagctagat ctgcatcagg catacaacca aattccagtg gcgccggaag      2400
     atattccgaa aacggctgtc gttacgccct tcgggctgtt cgaatataaa ttcatgacat      2460
     acggtcttag aaacgcgagt caaacatttc agcgtcaaat cttccgcgct ctaggcgacc      2520
     tggaatttgt gtttgcattc atcgacgaca ttctcatagc gtcgacgtct cttgaagagc      2580
     acgaagctca cttacgcata gtgttacagc gattaaaaaa gttttattta cgactcaatg      2640
     tagataaatg cgagttcggc aagcaagaat tagaattcct cggctttacg attaacagcg      2700
     aaggttgtaa accaacactc gataaggttc aggctattcg cgagtttcca aggcctaaca      2760
     ctatagtcga attgcgtcgt tttcttgggc ttgtcaactt ttatcgtaaa ctactgcata      2820
     atgcagctac cgttcaggca ccattaaatg agtaccttcg cgattcacgc aaaaacgaca      2880
     aacggccaat catatggacg ccggcggctg aggaagcgtt taataagtgc aaggagagtc      2940
     tggccaacgc gactatactc tctcacccct ccgacgcagc cgagacgcgc ctcgtttgtg      3000
     acgcgtcaga tttcgccatc ggggccgccc tcgaacaacg tctagacgac tcgtggaaac      3060
     cgctcgcgtt cttttcgcgc aaattaagtt cggcgcaaca gaactacagc gcgtacgatc      3120
     gggagcttac ggcgatcgcc gaggcagtca aatattttcg ttatttcctc gaagggcgaa      3180
     atttcaagat tgtgaccgat cacaagcctc tcatctacgc gttcatgcaa cgttccgaaa      3240
     aggcatcacc ccggcaacag agacaacttt cgttcatctc gcagttcacc acgcgtatcg      3300
     aatacctatc gggcaatgat aatatcgtgg cggattccct ttcccgcatc gaagccatcc      3360
     gtttacctgc cgagatcgaa ctaaatgagc ttgcacagca acaagaacaa gacgaggagc      3420
     tacggtccat ccgcgaatct cctgaatttc cgcttactat gaagcgaatt caatgggggc      3480
     cgacgcatac tacactttac tgcgaaatga ccggcgaggc aatccgcccc tatataccgg      3540
     catctttacg agatcgcgtc tttcacttgt tccatgacgc ggctcatccg ggccctaaag      3600
     tcactgatcg ggtaatccgt caacggtatg tgtggcctaa catgcatcgc gacattgcga      3660
     agtggtgcaa gaattgtctt gactgtcagc agtcaaaaat aacccgacac gttcaattac      3720
     atcctgaaaa atttgtcgcg cccgacgggc gtttcgagca tgttcacatg gatctaatag      3780
     gtcccttgcc tgagtcggac gggtacagat attgtgtgac gatgcattga tagattttcg      3840
     cgttggccag tagcaatacc tctgaaagac atcgaagcca ttacagtggc acgcgcgttt      3900
     tacgacaact gggtagcaaa ttttggagca cccaaaacga taactactga tcaaggtagc      3960
     cagttcgaag cgcaactttt tactgcactt cttcagctga tcggctgtca acgaattcgt      4020
     accacggcgt atcaccccgc ctcgaacggt atgatcgagc ggtggcatag aagcttaaaa      4080
     gctgcattat gtgtcatgct aatgaaggtt ggtcacgagt actttcgacc gtattattag      4140
     gtctgcgtac tcatgtccgc cttgacaccg gcgcatcgcc tgcggaattt gtttacggaa      4200
     cgacgctgcg cgtccccgga gaatttgtac tgccggacga cttcactcct agtccgcaaa      4260
     ttttcatcga ggaattccgc gagcatatgc gcaaagttaa gccaatctcg atagagcata      4320
     agcacaagaa acgcgcattc gtatttaaag atttatattc atgttcccat gtttttctac      4380
     gggtgggcgg taccaagaga gcgttagagc gtccctacac cggccctcac aaggttataa      4440
     atcgtgtktc ggatcgagta ttcgacattg atgttaacgg tacacagcgc agtgtatcgg      4500
     tcgaaaattt aaaaccagcg tatggcatac gcgatgactt atgtagtgcg accccagaag      4560
     cagggcaagc aaccaattcg ttcagcaacg agcaaccagc tttgaaaacg tatgcgcgtc      4620
     cgaagaaaaa agtcaccttc gccatataat tataataaat cctcccaacg acaaaatgta      4680
     attagcttaa gacagacacc aaagacacgc aatgatatgt tttatataat atgttttgta      4740
     tgatacgttt tatatgtttt atatggtaga cctaagtgcc ggcattataa atgtacctgt      4800
     cactaaagca atattttgtt aacctagtaa taagcatagg gtttagattc gttgtcactc      4860
     gggggggagt a                                                           4871
//
ID   Gypsy-2_AEc-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AEc_;
KW   Gypsy-2_AEc-I; Gypsy-2_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-284
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 662-662 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 284 BP; 83 A; 63 C; 62 G; 76 T; 0 other;
     tgtagggaac tacgttctca atacctcact agcgcagcga gtgtagaaag cctagggatt        60
     ttgtaggttg cgagttgcct acaagcagcg tcagagaaaa aaataagatt agatagatta       120
     tggcgctcat cctgtacggt cgtattcatt cgtgctccag taataaagat tcatcgttac       180
     cagttacaag aaagtgtcga tcattacacc ttacatcacg tcacacgaca agcgtgggct       240
     tgtcttgaga atctgactcg tcaatcgagt cacttattcc caca                        284
//
ID   Gypsy-2_AnFu-I repbase;    DNA;    INV; 3973 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-3973
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2888-2888 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..3943
FT                 /product="Gypsy-2_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSLIGEIEPFVMGESIREYLERIDIFFQVNEVEDSKK
FT                 TVMLLTLGGASLYSLISKMVLPEQPKTLNYEKLCIKLQEQLEQKVNVVAER
FT                 FNFRNCLQKDSSVAEYIVELKSLAQSCKFTCCLKESLRDQLVVGVRDEGLR
FT                 KRLLRESELTFESAENIARTWEAADEQNETFTSKEKPREMAVIKCAPKRSV
FT                 GPKVHYHRGNSTPLHQQSYTHKQESKQQQQQQQQQQQQQQQCYRCGRSHNP
FT                 QTCPARMWQCFNCKKYGHVSSCCRSTNVHSLRAEPKDVSLTRILEENTISN
FT                 PEVCVLNINGVDIAFEIDCGACNTVIPESVYRKEFANVELEQTHLRFITAS
FT                 GQRLTPLGKICVNVAIKSKTVRLEVNVIKTENNGNPLLGRDALDILFPDWR
FT                 KGFKLNQIEADKWLGDMKKMFPNLTNGNNKETIEGFEASLVLKPNFTPIFH
FT                 KAYSVPFALIEKVEANLDKLVNDGILVPIRTSAWASPIVVVGKSDGSVRIC
FT                 LDGKATINKYLTVEHYPLPRIDDILAKIANWTVFCKIDLTGAYLQVKLSEN
FT                 SQNICTINTHKGLYKYTRMPFGVQSAPAIFQTIVDQILLKTKGIAYMDDIL
FT                 VGGENEKQCMENVCEVLKRLELHKVKINEKKSEFFKTEIEYLGYKISKNGI
FT                 TPNESKVKAIIEAPVPSDVMQLQAYLGMINYYSRFLPNLATILSPMYELLR
FT                 KDKKYVWSKECQESFEKAKSMLVDNNVLVPFDPKKPVILAVDASPYGLGAV
FT                 LSHEIGGVEKPIYFASTTLSQAQRNYAQVHKEALAVVFGVQKFHKYIYGIK
FT                 FKLVTDNSGVKEIFKPSRTTSSIAVARLSRWALLLANYEYVIEHRPGKCMG
FT                 HVDGLSRLPLAEILEIDEEFTQLNAISSSSIIDIELVKQFQKSDSILQKVY
FT                 KNVKYGWSNNVKWELKDYAKVSNSLAIEDGVLFFNDRVVIPDKLKDKIVSL
FT                 FHENHDGLVRMKMSARKLVWWKNMDRDFEQYIKACQVCQCRQIVPKEIVAT
FT                 KWLQCTRPFQRVHIDFFFFENSTLFIIVDSFSKFMEVKIMKSTKAENVIEM
FT                 LEIFFAYFGLPEEIVSDNGPPFSSEKFLSFLRAKGIKVSKSPPYHPQSNGL
FT                 AERAVRTVKDSLKKYLLDTRLKPLSLQRKLNHFLISYRNSPCTVTKVTPSE
FT                 RVFCYVPHTLITKVNPIKGHERQILTKVESRRQVPMITNHDQYEEEEEVYY
FT                 KNHFKEHMRWIPAIVKKKISGLRYLISLNGVIRMVHKNQIRKKDSRMSKNV
FT                 IVVPTNVNISHKRKRSESSPPPLRRSKRLEGQPRLKYPR"
XX
SQ   Sequence 3973 BP; 1452 A; 617 C; 893 G; 1011 T; 0 other;
     gttggcgacg aggaaaaagc aaacgaaaag tcaaatatta gtcatgtcgt taatcggaga        60
     aattgaacca tttgtcatgg gcgaaagcat cagggagtac ttggaacgta ttgatatttt       120
     tttccaagtt aacgaggtgg aagattcaaa gaaaacagtg atgttgttaa cgttgggagg       180
     agcatcgctg tatagcctca tatcaaagat ggtgttgcct gaacagccaa agacgctaaa       240
     ctacgagaag ctgtgcatta agctgcaaga gcaattggaa cagaaagtca acgtagtggc       300
     ggaacggttc aactttagaa actgtctaca aaaagatagt tctgttgcgg agtacatcgt       360
     ggaactgaaa tcgctcgcac aatcgtgtaa attcacgtgc tgtctaaagg aaagcttgcg       420
     agatcaatta gtagttggtg tccgagatga aggactaagg aaacgtcttc ttcgagagtc       480
     cgagttaaca ttcgagagtg cagaaaatat cgccagaaca tgggaagctg cggatgaaca       540
     aaacgaaaca tttacatcga aagagaaacc gagggaaatg gcggtgatta agtgtgcgcc       600
     aaaacgaagc gtcggtccaa aagtgcacta ccaccgtggg aacagtacac ctttacatca       660
     acagagctac acgcataagc aggagagcaa gcagcagcag cagcagcagc agcagcagca       720
     gcagcagcag cagcagtgtt acagatgtgg aagatcgcat aatccacaga catgtcctgc       780
     gcgtatgtgg cagtgtttca actgtaagaa gtatggtcat gtgtcgtcgt gttgccgaag       840
     tacgaacgtg catagtttgc gagcggaacc gaaggatgtg tcgctaacac gcatattaga       900
     agagaatacg atcagtaatc cagaagtgtg cgttttaaat atcaacggtg tagacattgc       960
     gtttgagata gactgtggtg cgtgtaatac ggtaataccg gagagtgtgt atcggaaaga      1020
     gtttgctaat gtcgaattag aacaaacaca tttgcgtttt attacggcat cgggtcaacg      1080
     tctgacaccg ttaggaaaaa tatgcgtaaa cgtagcgata aaaagtaaaa cggtccgtct      1140
     agaagtcaac gtaattaaaa cagaaaataa cggtaatcct ttactaggtc gtgatgcgtt      1200
     ggatatatta tttccggatt ggcgaaaagg ttttaaatta aatcaaatcg aagcggacaa      1260
     atggcttgga gacatgaaaa aaatgtttcc gaatctaaca aacggaaata acaaggaaac      1320
     gatagaaggg tttgaagcca gtttagtgtt aaaacctaat tttaccccaa ttttccataa      1380
     agcgtattca gtgccgttcg cattaataga aaaagttgaa gccaacctag ataaattagt      1440
     gaatgacggt atactagtac caatacgtac atcagcgtgg gcgagcccta tagtggttgt      1500
     aggaaaaagt gatggctcag tacgtatctg tttggatgga aaagctacga taaataaata      1560
     tcttacggta gaacattacc cattaccgag gattgatgat attttggcga aaattgcaaa      1620
     ttggacagtt ttttgcaaaa tagacctaac aggagcgtac ttgcaagtaa agttatcaga      1680
     aaattcgcaa aatatttgta ctataaatac gcataaaggg ctatacaagt acactagaat      1740
     gccatttgga gtacagtctg cgcctgcaat atttcaaaca atagtagatc aaatattgtt      1800
     aaagactaaa ggcattgcgt atatggacga catactcgtt ggcggagaaa atgaaaaaca      1860
     atgcatggag aatgtatgcg aagttttaaa aaggctggaa ttgcataaag taaagataaa      1920
     cgaaaagaag tcggaatttt ttaaaacaga aatagagtac ctaggctaca aaatatcaaa      1980
     gaacggaata acaccaaatg agtcaaaagt aaaagcgatt attgaagcac cggtaccatc      2040
     agatgtgatg caattacaag cgtatctagg catgataaat tattacagca ggtttttgcc      2100
     aaatctagca acaatattga gtccgatgta tgaacttcta cgcaaagaca aaaaatatgt      2160
     atggtcaaag gaatgtcagg aatcattcga aaaagcgaaa tcaatgttag tagataacaa      2220
     cgttttagta ccatttgatc ctaaaaaacc tgttatttta gcagtagatg caagtcctta      2280
     cggtttaggt gcagttttgt ctcatgaaat tggaggggta gaaaaaccta tatattttgc      2340
     ttcaacaact ctttctcaag cacagagaaa ttacgcacag gttcataagg aagcattagc      2400
     cgttgttttc ggtgtccaaa agtttcataa atacatttac ggaatcaaat tcaaactggt      2460
     aacagataac tcaggcgtca aagaaatatt caaaccgtca agaacaactt cgtctatagc      2520
     agtagctagg ctgagccgat gggcattgtt attagccaat tatgaatatg tgatagagca      2580
     taggccagga aaatgtatgg gtcacgtgga tgggttaagt agattacctt tggcagaaat      2640
     tttagagata gatgaggagt tcacacaatt aaatgcgatt tcgtcttcct caattatcga      2700
     tattgagttg gtcaaacaat tccaaaagtc agatagtatt ttgcaaaaag tctacaaaaa      2760
     tgttaagtat ggatggtcga acaatgtgaa atgggagttg aaagattatg ctaaagttag      2820
     taacagttta gcaatagaag atggagtatt attttttaac gatcgagtag taataccaga      2880
     taagctgaaa gataaaatag tcagtctatt ccatgaaaac catgatggtt tggtaagaat      2940
     gaaaatgtca gctaggaaac tcgtgtggtg gaaaaatatg gatagagatt ttgagcagta      3000
     tataaaagca tgtcaagtct gtcagtgtag acaaatcgta ccaaaagaaa tagtcgcaac      3060
     caaatggttg caatgtacgc gtccgtttca aagagtgcat atagattttt tcttttttga      3120
     aaatagtacg ttatttataa tagtcgatag tttttccaag ttcatggaag taaaaattat      3180
     gaaaagtact aaggcagaaa atgttataga gatgctagaa atattttttg catattttgg      3240
     gttaccagag gaaatcgtgt cagataatgg tcctccattt agttcagaaa agtttttgtc      3300
     gttcttaaga gcaaaaggta taaaagtgag taagtccccg ccgtaccacc cacagtcaaa      3360
     cgggttggcc gagagagcgg ttaggacagt aaaagatagt ctaaaaaagt atttgttgga      3420
     tacaagatta aaaccattaa gtctacaaag gaagctgaat cactttctaa tcagttatag      3480
     aaatagtcca tgtactgtaa ctaaagtcac gccgtcggag agagtatttt gctacgtacc      3540
     acacacatta ataacaaaag taaatcctat aaaaggacac gaaagacaaa tcttaactaa      3600
     ggtagaatca agaaggcaag ttccaatgat aacaaatcat gatcagtatg aagaagagga      3660
     agaagtgtat tacaaaaatc actttaagga acatatgaga tggattccag caatagtcaa      3720
     aaagaaaata agtggtctaa gatacttaat aagtctgaat ggagtaatac gcatggtgca      3780
     taaaaaccaa ataaggaaaa aggatagtag gatgagtaag aatgtaattg tagtaccaac      3840
     aaatgtaaat atttcacata aaaggaaaag gagtgaatca agtcctccac cgttaagacg      3900
     atcgaaaaga ctggaaggac aaccaagatt aaagtatcct agatagaaag taaacttcgt      3960
     ttaaggggga gaa                                                         3973
//
ID   Gypsy-2_AnFu-LTR repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-140
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2954-2954 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 140 BP; 50 A; 18 C; 32 G; 40 T; 0 other;
     tgtagtgtcg taagtgtagg ttagcgtata agcgtatagt gtaagcgtta gatgtaagta        60
     tatgtatgta tgtattagac taagaataaa gagtcagtcg ataaatagca ctcgaacgag       120
     caacacctaa ctccataata                                                   140
//
ID   Gypsy-2_AnMe-I repbase;    DNA;    INV; 4421 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AnMe-I;
KW   GYPSY4-I_AG.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4421
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6814-6814 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. The consensus is ~87% identical to
CC   that of GYPSY4-I_AG from Anopheles gambiae.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..4381
FT                 /product="Gypsy-2_AnMe-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MVGKDELRRALIEAGVDVPHTATLAQLRQLYASLELA
FT                 ARSPRAAQPTTSAMASASAYANHPEAAILYHPHENGGDAVNDAASTNNTTD
FT                 ANANLPSAQGVAAALPRGSDDMEAHIEALRMQLQLAELRQKVHQLEAQQPT
FT                 AICTKDFESFIEPLDAEKNSDVIRWFRDLERLFSLHRVCDADKFLFTLRLL
FT                 TGTAANVAKEFDVTTYDELKMELIDNLHFVATPESVYRQLRNRRLQPQESA
FT                 LRYLFDMQRIAGQADIPDLELIPIVIDGLGSPSITSSLHFMPLTMEDFRKK
FT                 LKLFESCRHLRAIKPPSADIRAPMNSXMERPQPSQEPVRCFNCSRFGHLQS
FT                 ACSKPKRPPGGCFRCFQTGHVYRNCPERRANATVEGGISSEDTLGTNQEVS
FT                 LTFLHPSTKRTTLNRVRSLLDTGSPVSFISDTVVPARLLGPLSTTEYCTMV
FT                 KGPLYSRGRINCTIQFRDHSVQHSFIILPGIAWPVIIGRDLLNSLNISLTY
FT                 SSFSKSCITKTPLAELEEVDTTLPEKLEDAIRSICSLDVIEAENELDLGDT
FT                 LSLEQRSIVISIIENSYLKYISNTKPLVHPMKINLTHDTPIFTKPRRLSYG
FT                 ERQQVKQIVDKLLAENIIRPSNSPYASALVLVRKKSGEVRMCVDYRPLNKI
FT                 TVRDNYPLPLIETCLEHLCGKRFFSLLDLKSGFHQVPMSDESIPYTSFVTP
FT                 DGQFEYLKMPFGLRNAPSEFQRFINSILREFIDDGRVVVYLDDIIIASTDL
FT                 NSHLTTLRSVLEKIKQNNLELRLDKCKFAHEEIEYLGYKANYNGIQPSDRH
FT                 IQALTNYPMPTNLKQLRRCLGLFSYFRRFVPSFSCIAKPMTKLLQKDEAFN
FT                 FDSTCVHAFETLRDKLVHSPVLSIFDPKRETELHCDASSFGFGAILLQKQD
FT                 DNKLHPVAYFSKTTSKDESKLHSYELETLSIIYALKRFHTYVHGLPIKIVT
FT                 DCNSLVETLKNRNASAKIARWSLFLENYDYTICHRSGTSMPHVDALSRTEA
FT                 VGAIGEIDLDFQLQVAQTRDPSIEALKHRLESEEVDGFLLQDGLVYRDIPD
FT                 GQPQLYVPSEMVDNVIRHTHERIGHLGINKTFSKISQHYWFPHMKPTIDKF
FT                 IKNCLKCIVYSAPHHTNARNMYSIPKEPLPFDTIHIDHLGPLPSSPLRKKY
FT                 ILVVIDAFTKLTKLYPTSSTNAKEVCSALSQYMSYYSRPKRIVSDRATCFI
FT                 STLFEDFLESHNISHVLNATGSPQANGQVERVNRVLRPILSKLSDAPDQAD
FT                 WVSKLRSAEYALNNTVHTSTNFCPSVLLFGVEQRGKIPDEIVEHLDEKFDQ
FT                 VPRDLGAIRAKALENIEESQRKNEDYFSKKHKPLQCYKEGELVAIRYTDTT
FT                 DSGNKKLNPKFRGPYVIHKVLPHDRYVVRDVEGCQLTQLPYDGVLEANKLR
FT                 RWTESSD"
XX
SQ   Sequence 4421 BP; 1180 A; 1172 C; 887 G; 1181 T; 1 other;
     tctcagaagt gggataacca acaaaaagtc gcctacaaac cgcctgcaag ccgcttaacc        60
     agccggtcta cgtgtgtctg tgtacgtgtg tgcgtgtgac ataacgccat ttcataaaat       120
     ggtgggcaaa gacgaacttc gccgggcgct catcgaagcc ggcgtcgacg taccgcatac       180
     tgccaccctc gcacaacttc ggcaacttta cgcctctctc gagctggccg ctcgttcccc       240
     ccgtgcagcg cagcccacca cctcggccat ggcatcagcc tccgcttacg caaaccatcc       300
     cgaggccgcc attttgtatc accctcatga aaatggcggt gacgccgtta atgatgccgc       360
     ttcgacgaac aacaccaccg acgccaatgc taatctgccc tccgcccaag gtgtagctgc       420
     cgcccttccc cgcggttccg acgatatgga ggctcacatc gaagcgctgc gaatgcagct       480
     acagttagcc gaattgcgtc agaaagtgca tcaactcgag gcgcagcaac cgaccgccat       540
     ttgtacaaag gatttcgaat ccttcatcga gccgcttgat gctgagaaaa attccgatgt       600
     catccgctgg ttccgtgatt tggaacgcct tttctcactc caccgagtgt gcgatgcgga       660
     caaatttttg tttactcttc ggctcctcac aggcacggca gctaacgtcg ccaaagaatt       720
     tgacgtcacc acttacgacg aactgaaaat ggagctgatc gacaaccttc atttcgtcgc       780
     tactcctgaa tctgtgtacc gccaactccg caatcgtcgg ctgcagcccc aagaatctgc       840
     cctccgctac ctgtttgata tgcagcgcat agctggccaa gccgacatcc ctgatttgga       900
     actgatcccg atcgtcatcg acggcttggg aagcccgtca attacttcaa gcctgcattt       960
     catgcccctc acgatggaag atttccggaa gaagctgaag cttttcgagt cttgccgtca      1020
     tcttcgagcc atcaagcccc cttccgccga tattcgggcc ccgatgaaca gccstatgga      1080
     acggccccaa ccgtcgcagg aacctgtccg ctgcttcaac tgctcccgat ttggacacct      1140
     tcagagtgcc tgctccaagc cgaagcgccc acccggcgga tgtttccgct gtttccagac      1200
     tgggcacgtc taccgcaatt gccctgaacg tcgggccaac gccactgttg agggcggtat      1260
     tagctcggag gatactctcg gcacaaacca agaggtgagt ttgacatttc tacacccttc      1320
     tactaagcgt accaccctca atcgcgttcg ttcccttctc gatacaggga gtcctgtgag      1380
     cttcatcagt gacacagtag taccagctag gctgctagga cctctttcaa caactgaata      1440
     ctgcactatg gttaagggac cactttattc tcgaggacga attaattgca caatccagtt      1500
     tagggatcat tctgttcaac attcttttat tatattacct ggaattgcgt ggcctgtcat      1560
     tattggtcgc gatttactta attctcttaa catttctctt acttattcat ctttttcaaa      1620
     atcatgtatt actaaaaccc cgttggcgga acttgaagaa gttgatacaa ctcttccaga      1680
     aaaattagaa gatgctatta ggagtatttg ctcgctcgat gtaatcgaag ccgaaaatga      1740
     actggattta ggagatactc tatccttaga gcagcgttca attgttattt ctattattga      1800
     gaattcatac ctcaaatata tttcaaacac taaaccactc gtacatccaa tgaaaatcaa      1860
     tcttacccat gatacaccga tattcactaa gccgcgtaga ctttcttatg gcgaaagaca      1920
     acaggtgaaa cagatcgttg ataaactctt agcggaaaac atcatccgcc ctagcaattc      1980
     tccttatgct tccgcattag ttctcgttag gaaaaagagc ggcgaagttc gtatgtgtgt      2040
     ggattaccgg cccctcaaca aaattaccgt tcgggataat taccccctac cccttatcga      2100
     gacttgtttg gagcatctgt gtgggaaaag attctttagt ttgctagact taaaaagcgg      2160
     tttccaccaa gtcccaatga gtgatgaatc catcccttac acttcttttg taaccccaga      2220
     cggtcagttt gaatatttga aaatgccctt cggtctccgc aacgcccctt ccgaattcca      2280
     acgttttatc aactctattt taagagaatt tattgatgat ggcagagtag tcgtttatct      2340
     tgatgacatc atcatcgctt ccaccgatct taactcacat cttaccactc ttcgatctgt      2400
     cttagaaaag attaaacaga acaatttgga actccgtctt gataaatgca aatttgctca      2460
     cgaggaaata gaatacttgg gctacaaagc taattacaat ggaattcaac ctagtgatcg      2520
     gcatattcaa gcacttacca attaccctat gcccactaac ctgaagcagc ttaggcgttg      2580
     ccttgggttg ttttcatatt tccgacgctt tgttccctcc ttctcttgca tagccaaacc      2640
     tatgacaaaa ctacttcaga aggatgaagc atttaatttc gattcaactt gcgtacacgc      2700
     ttttgaaacc ctacgtgaca aacttgttca ttcccctgtt ctttccatct tcgacccaaa      2760
     gcgggaaact gaattacact gtgacgcgag ttcttttggt tttggtgcca tactccttca      2820
     aaaacaagat gacaataaat tacaccctgt cgcttacttt tccaaaacca cttcaaaaga      2880
     tgagtccaag ttacacagct atgaacttga aactctttcc atcatttacg ctcttaagcg      2940
     cttccacact tatgttcatg ggctccccat taaaatagtt accgattgca actccctggt      3000
     tgaaaccctt aagaaccgta atgcttccgc taagattgcc aggtggtcct tgtttctgga      3060
     aaattacgat tacaccatct gtcatcgctc aggtacctct atgccccatg tcgatgcact      3120
     gagtcgcacc gaagccgtgg gtgccatcgg tgagattgac cttgacttcc agcttcaagt      3180
     agctcagaca cgtgacccat ctatcgaagc tcttaaacat cggttagaat cagaagaagt      3240
     tgacggattc ttacttcaag atgggcttgt ctatcgcgac atacctgatg gtcaacctca      3300
     attgtatgtc ccttcggaaa tggtcgacaa cgtaattaga cacactcacg agcgaattgg      3360
     ccacctaggc attaacaaaa cctttagcaa aattagtcag cattattggt tcccccatat      3420
     gaagcccacc atcgacaaat tcattaagaa ctgcctcaag tgtattgttt attctgcacc      3480
     tcatcatact aatgcccgaa atatgtacag catccctaaa gaacctttgc ccttcgatac      3540
     aatccatatc gatcatttag gtccactgcc tagttcccct ttacgcaaga agtacatact      3600
     tgttgttatc gatgctttca ctaaattaac caaactttac ccaacctctt ccactaatgc      3660
     aaaagaagtg tgttctgccc tctctcaata catgtcttac tatagccgcc ctaagcggat      3720
     tgttagcgat cgtgctactt gtttcatctc caccttgttt gaggactttt tggaatcgca      3780
     taacattagt catgtcctca acgccaccgg atccccacaa gccaatggac aggtagaacg      3840
     ggtgaaccgc gtgttgcgtc ccatccttag caaactatct gatgctccag accaggccga      3900
     ttgggtgtcc aagttgcgat cagctgagta tgccttaaac aataccgtcc acacatctac      3960
     gaacttctgc ccctctgtct tgctctttgg agttgaacaa cgcggtaaga ttccggatga      4020
     aatagtcgaa cacttagacg aaaaatttga ccaagtgcct agggacttag gagccattcg      4080
     ggctaaagcg ttagaaaaca tagaagaatc tcaacggaag aatgaggatt attttagcaa      4140
     gaagcataaa ccactgcaat gctacaaaga aggtgaatta gtagccatac gttataccga      4200
     tacgaccgat agcggtaata agaagctcaa tcccaagttc aggggaccgt atgtcattca      4260
     taaagtgtta cctcatgata ggtacgtggt acgtgatgta gaaggatgtc aactcacaca      4320
     actaccctac gatggggttc tagaagcgaa taagttgcgg cgctggaccg agtccagtga      4380
     ttaggaaatt gagggcaatt tattgttcag gatagccgag c                          4421
//
ID   Gypsy-2_AnMe-LTR repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-271
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6805-6805 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 4-bp TSDs. The consensus is ~96%
CC   identical to that of GYPSY4-LTR_AG, but the internal portions
CC   show a lower identity.
XX
SQ   Sequence 271 BP; 73 A; 71 C; 54 G; 73 T; 0 other;
     tgtaacgtcc ggactaatat cgcccactgt gcactcaacc cgaaccccaa acgcagcggt        60
     atatacgcat tgtattttga ccgctggagc acccggtgtg ctagatgaac tgtcatagaa       120
     taaagctctc ttcttggcgc gacattgaac tgaacagacg taagccactg acttctgtgt       180
     ttaactaatt gtgtgctctt ccgaattgtg ctaaatatta ttaaaacggc caattaacct       240
     tccgccaccc gtaaaacgct tggtcgttac a                                      271
//
ID   Gypsy-2_AnSt-I repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4438
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 787-787 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..2737
FT                 /product="Gypsy-2_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase."
FT                 /translation="MERLVEEFTRVGLVRKCEMAGLATSGSKEDLAKRIMD
FT                 SGITLEAVPEQNPIEDAANTTGYMDAESGSLVDATKTAIIHTPVQPYSFRD
FT                 VEDGIEPYGADLTKDIRAWFDDFEGVAKMALWSEDQMFIMCRRKMVGIARS
FT                 FLATEKTLSSYPVLRSKLIKEFEKIVRSGDVHRRLMARRKTHKETMLEYVY
FT                 EMQRIARDADIDECSLIEYIVDGVTHETRMRASLYRTSNMTELKQELLFLE
FT                 RAEAKRTSEKSVTRVEPRNQRKCYNCGDVGHEAKKCVKEENPKKCFECDGV
FT                 GHRARECDSRTKGPKCYSCGERGHVSNSCPRNRNRHNPGNTNLVSSENSGT
FT                 VDMRIGQYYFKTLFDTGSEYSLLQYSVMNKIGSLLLAKTDMVFNGFGGKKT
FT                 KALGRVETEVCIDGQNYPVMSFYVVPDNSSVYEVILGRDALCAMDALVTAE
FT                 GVKLKPRVSENQEQCDVLCANALTINGANEVSIHHQYRNEIGQMIEDFKDK
FT                 EKTISKWSSKSPVELEIVPDGQIMPFRHAPSRLPFVQEQAVNKQVDEWIKS
FT                 GIIRASTSNFASRVVVVKKKDGSNRVCIDFRKLNSMVLKDAFPIPVIDDVL
FT                 VKLQAAKWFSVMDLENGFFHVPIKEESKKFTAFVTSRGLYEFNRTPFGFCN
FT                 SPAVFIRFVNHVFQQLIDDNVLELYMDDIIVHGKTAEECLARTKKVLSTAA
FT                 EFGLKIKWKKCLFMQRSVNFLGHYIENGTVSPGMEKTKAVREFKTPSNVKA
FT                 VQAFLGLTGFFRKFIKSYSIIARPLTDLLKNEAKFSIGERELNAINA"
FT   CDS           2713..4437
FT                 /product="Gypsy-2_AnSt-I_2p"
FT                 /note="ribonuclease H, and integrase."
FT                 /translation="KRVECYKRVKEALVREPVLKLYQRGAETELHTDASKE
FT                 GFGAALLQRFEGKMHPVSFWSKKTTQAESSLHSYILEAKAVYLSVKKFRFY
FT                 LLGNQFKLVTDCIAFKQTLKKAEVPKDVLPWVMFLQDFTFETEHRPGKNLK
FT                 HVDCLSRYPLSVMNIAADVSVRIRENQLKDDQLKAIMAVLEKAKYDPYKMK
FT                 NGLLHRAVEGQDLLVVPRLMERQIISDAHNAGHIGVQKMMHGIRQKFWIPH
FT                 LEMKVRQHIGNCVPCILHNKKLGLKEGYLSPIPKGDVPLHTLHMDHVGPMD
FT                 TTAKQYRYILTIVDSFSKFVWLYPTRTTTAEEVLRKLECWSAVFGNPTRII
FT                 TDRGSAFTSNTFAAHVQNQGIEHIVSTTGVPRGNGQAERVNRTAIEMLAKL
FT                 STEDPSKWFKWVNRVQRAINAYYHSTTGKTPFELMFGVKMKNSSDDQLREI
FT                 INKEWYEYHDNVRQELRKDARIAIEQAQRRYKDQFDKKRKPASGYKLGELV
FT                 AIKRTQFVAGKKLASEYLGPYEIMHVNRNGRYRVRKVGLGEGPLETSTSED
FT                 NMRLWAYALTAEEGDDEDQGSDFNQDDR"
XX
SQ   Sequence 4438 BP; 1382 A; 778 C; 1196 G; 1082 T; 0 other;
     tttggtgtca gaagtgggat atacctattc ccaaaacccg tttgctgtgt gcggctggtc        60
     gtattagtgg ttgctgtgtg cgccaaaata aagacctgca cgggtgtgaa tataccgata       120
     cgcggaaaag gttcgcttta ctagctgtgt gcggcaggtc gtgtgagtgg ttgctgtgtg       180
     cgccaaggga tcgacgtgcg cgtgtgtggt aggcgattcc tggaaagtat tcggtgcttc       240
     ggctgtgtgc tgtttttcat gtgagagtgc tgtgtgcact aaaaaagaaa caatcgacgt       300
     gtatgtgagc tgtgtgttac aggtcgtgcg gtgtgaataa actatggaac gattggtgga       360
     agaatttacg cgtgttggcc tagtgcgaaa gtgtgaaatg gctggcttgg ctacgtccgg       420
     cagtaaagag gacctggcga aacggatcat ggattccgga ataacgttag aagccgttcc       480
     cgaacaaaat cccatcgaag atgccgcgaa cacaacgggc tatatggatg cggaaagcgg       540
     atcgctagta gacgcgacaa aaacggccat aatccataca ccagtgcagc catactcatt       600
     ccgagatgtg gaggacggaa ttgagcccta tggagcggat ttgacaaagg atattagagc       660
     gtggttcgac gattttgagg gtgtcgcaaa aatggcactg tggtccgaag accaaatgtt       720
     catcatgtgt cgacgtaaga tggtgggcat tgcgagaagt ttcctggcga cggaaaaaac       780
     tttatcatcc tacccggtgt tacgatctaa actgataaag gaattcgaaa agatagtgcg       840
     ctcgggtgat gttcatagaa ggcttatggc tcgacggaaa acgcataagg aaactatgct       900
     tgagtacgta tatgaaatgc aacgcatagc tcgtgacgcc gatattgacg aatgcagcct       960
     aatcgaatac atcgtggacg gcgtgaccca tgaaacaaga atgcgtgcgt cactgtatcg      1020
     aacgagcaac atgaccgagc taaagcagga attgttattc cttgaaagag cagaagccaa      1080
     aagaacatcg gaaaagagtg ttacgcgagt tgaaccaaga aatcaacgaa aatgttacaa      1140
     ttgtggcgat gtcggacatg aagctaagaa gtgtgttaaa gaagaaaacc cgaaaaaatg      1200
     cttcgagtgt gatggtgttg gtcatcgagc aagggaatgt gattctcgaa caaaaggacc      1260
     gaaatgttat tcgtgcggtg agcgcggcca cgtgtcgaac agttgtccaa gaaatcgaaa      1320
     caggcacaat cctgggaata cgaacctcgt ttcgagtgaa aatagtggaa ctgttgacat      1380
     gcgcatcggg caatactatt tcaaaacgct ttttgacacc ggcagcgaat acagtttgtt      1440
     acaatacagt gttatgaaca aaatcggtag cctattgttg gcaaagaccg acatggtatt      1500
     caacggtttt ggtggaaaaa aaacaaaggc attgggtcgg gtagaaaccg aagtgtgtat      1560
     cgacgggcaa aattatccgg taatgtcttt ttatgtggtc ccagacaata gcagtgttta      1620
     cgaagtgatt ttgggaaggg atgcgttgtg tgcgatggac gccttggtaa ctgcggaggg      1680
     cgttaaacta aaaccaagag tgagcgagaa tcaggaacaa tgcgatgtgt tgtgtgcgaa      1740
     tgccttgacg ataaacggcg caaatgaagt atcaatacat catcagtatc ggaatgagat      1800
     agggcaaatg atcgaggatt tcaaagataa ggagaaaacc atctcgaaat ggtcaagtaa      1860
     aagtccggtt gaactggaaa ttgttcccga tggacaaata atgccattta ggcatgcgcc      1920
     cagcaggctg cctttcgtgc aggaacaagc agtaaacaaa caagtcgatg agtggattaa      1980
     gagcggaatt ataagggcgt ctacatcaaa cttcgcgagt cgtgtcgtgg tagtaaaaaa      2040
     aaaggatggg tcaaatcgtg tgtgtattga ttttcggaaa ttaaacagca tggtattgaa      2100
     agatgcattt ccaataccgg tgatagacga cgttctagtg aagttgcaag cagcaaaatg      2160
     gttctcggtg atggacttag agaatggttt cttccacgtg ccaataaagg aagagagcaa      2220
     gaagtttacg gctttcgtga caagcagagg tttatacgaa ttcaatcgta cgccatttgg      2280
     tttctgcaac tcacccgcgg tgtttattcg tttcgttaac catgtgtttc aacaactaat      2340
     tgatgataat gtgttagagt tgtatatgga cgatattata gtgcatggga aaacggcgga      2400
     agagtgtcta gccagaacaa agaaggtgtt gagtacggcg gcagaattcg gactgaagat      2460
     aaaatggaaa aaatgtcttt ttatgcagcg atctgttaac tttttgggcc attatatcga      2520
     gaacgggaca gtttcccctg gaatggaaaa aacgaaagca gtaagggaat tcaaaactcc      2580
     gagcaatgta aaagcggtgc aagccttctt agggcttacc gggttcttta ggaagtttat      2640
     caagtcgtat tccatcatag ctagaccttt aacggatttg ctaaagaatg aggctaaatt      2700
     tagcattggt gaaagagagt tgaatgctat aaacgcgtaa aggaagcatt agtgcgcgaa      2760
     ccagtgttga agttgtatca gagaggtgca gaaactgaac tccataccga tgcgtcaaaa      2820
     gaagggtttg gtgcagcatt attacaacgg tttgaaggga aaatgcatcc agtttcattc      2880
     tggagcaaga aaacaactca ggcagagtcg agtttgcaca gctatatttt agaagcaaaa      2940
     gcggtgtatt tatcggtgaa aaaatttagg ttctacctgt taggaaatca gtttaaatta      3000
     gtaacggact gtatagcttt caagcagaca ctgaaaaaag cagaggttcc taaagatgtt      3060
     ttgccatggg tgatgttctt acaagatttt acgttcgaga cagaacatcg gcccggaaaa      3120
     aatttaaagc atgtggattg cttgagtcga tatccgttga gtgtaatgaa tattgcagct      3180
     gatgtgtcgg tgcggattag agaaaatcaa ttaaaagacg atcagttgaa agcaatcatg      3240
     gctgtgttag agaaagcaaa gtacgatcct tacaaaatga aaaacggtct attgcatcga      3300
     gctgtggaag ggcaagactt gttggtggtt ccgcgtctga tggaaaggca gataatatca      3360
     gatgctcaca acgcaggtca cattggagta caaaagatga tgcatggtat aagacaaaag      3420
     ttttggatcc ctcatttgga gatgaaggtg cgacaacaca ttggcaattg tgttccgtgt      3480
     attttgcaca ataaaaagct tggattgaag gagggttacc tgagtcctat tccgaaaggg      3540
     gacgtgcctt tgcacacact tcatatggac cacgtaggcc ccatggatac cacagcgaaa      3600
     caatacaggt atattctaac aatagttgat agtttttcta aatttgtttg gttatacccc      3660
     acacgtacta caactgctga ggaagtacta cggaaactgg agtgttggtc agccgtgttt      3720
     ggaaatccga caaggattat caccgataga ggatcagcgt tcacgtccaa tacatttgct      3780
     gcgcacgttc agaaccaggg tatcgagcac atcgtttcta ctaccggagt gccacgggga      3840
     aatggacaag cggagcgagt taaccggacg gctatagaaa tgctggcgaa actatcgaca      3900
     gaagatccgt caaaatggtt taagtgggtg aaccgagtgc aacgtgcgat aaatgcgtat      3960
     tatcattcaa caacgggcaa aacaccgttt gaactgatgt ttggcgtgaa gatgaaaaat      4020
     agcagtgatg atcagctgag ggaaattata aataaagaat ggtatgaata tcatgataac      4080
     gtaaggcagg aattgcgaaa agacgctcgt attgctatag aacaagcgca gcggcgctac      4140
     aaggatcaat tcgataagaa acgaaaacct gcgtcagggt ataagctagg agagttggta      4200
     gctatcaaac gaacgcaatt cgttgctggt aagaaacttg ctagcgaata cttgggtccc      4260
     tacgaaatta tgcatgtaaa ccgcaacggg cggtatcgcg ttaggaaagt aggacttggc      4320
     gaaggaccgc tagagacgag tacaagtgaa gataatatga ggctatgggc ttatgcgtta      4380
     acagcagaag agggagatga tgaagatcaa gggtctgact tcaatcagga cgaccgga        4438
//
ID   Gypsy-2_AnSt-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-186
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 776-776 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 4-bp TSDs, mostly TATA.
XX
SQ   Sequence 186 BP; 62 A; 34 C; 44 G; 46 T; 0 other;
     tgtaaaatca aaaacgttag ttgggtagca ggcaggatca ccctgtaccg agtaaaatga        60
     gaaggatcac cttgggcaga ggatgaaaag tagatcagta gcgaaacgtc agcagagcga       120
     taaggtcatg aaataaagtt gctgctccgt aaattcttca gttgttccat ttctcccatt       180
     attaca                                                                  186
//
ID   Gypsy-2_BM-I repbase;    DNA;    INV; 4805 BP.
XX
AC   nscaf2953;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BM_;
KW   Gypsy-2_BM-LTR; Gypsy-2_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4805
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 979-979 (2010).
XX
DR   Genome; nscaf2953; Positions 3438914 3434110.
XX
CC   Positions [3171-3647] - Integrase core
CC   'TATGTA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..2064
FT                 /product="Gypsy-2_BM-I_1p"
FT                 /translation="MMFEQMSLFSSGMEAMLQRIAENMSVHRPSQSSPTTL
FT                 VNFDPDEPEADIVNWCTLSEMIIEQKKLDGVDLILTLTHSLKGRAATCLTK
FT                 IQPGKISWPTIKEMLISKFSKPMMMQDHFDLIIKFEIEGKEGPAEAGIRLW
FT                 QLIEKIPDANMPEQVITGFAISILSQCDERIRRELNSVIITTKTQLFRTLR
FT                 GFTLKRKNEDPASSDSEPKRFRSLFRGSCHLCGKLGHRGVECRDRRLLSKN
FT                 FIIPAKPEQPPRPWARSSRPQVSCYVCGDANHVASGCPMRYKKKDDTAPGA
FT                 VAGPSRYVNVCSRASHGVLQISGVDFPFMFDSGSECSLIKQSHSNLLIGKR
FT                 FHEQVTLRGVGSNNIASTLQIKCPTSVQDLRFDVLYHVLPDKNLTESVLLG
FT                 RDILEAGLSVKISDGKLTFAKTKTSNSCSKSEICDLNMIDTDLVNENRDRL
FT                 IRILKKYSGSFIQKLPTARIKTAELKIDLIDPTKIVHRRPYRLSPTELKIV
FT                 NEKVNEMLVANIIRESCSPFASPILLVRKKDGGDRMCVDYRELNSNTRPDS
FT                 YPLPLINDQIDKLHGARFYCSIDMASGFHQLKVHKDSIEKTAFVTPTGQYE
FT                 FLTMPFGLRNAPQVFQRAINAVLKPLNDDKILIYMDDVLSASETIDEGLSR
FT                 LDKLLKALSNSGFSFNFKKCFL"
FT   CDS           2055..4223
FT                 /product="Gypsy-2_BM-I_2p"
FT                 /translation="MFFMKQKVEYLGYVISSGEVRPNPRKIEALRNVPKTT
FT                 TVKQVRQLIGLATYFRQFIPNFSNLLKPLYPLTSGKGTISWTTEHDKIHTK
FT                 IVNYLTSEPVLRIFDPSLPIELHTDASSEGYGAVLIQKVDNLPHVVAYFSH
FT                 RTSDAESRYHSYELETLAVVKSVEHFRHYLYGRKFTVFTDCNALKASHSKK
FT                 DLTPRVHRWWAILQSYDFSIVYKEEKNMAHADFLSRNSLISQNGAKEKIVN
FT                 FSELERGWLSIEQQRDSEISDLIVKAKSNELPPEISHTYDVRQGILYRKIE
FT                 RGKTTKWLPILPRSLIWSLISHVHTEIKHLGYEKTLDKLYELYWFQNMAKY
FT                 VKKFVDSCVICKSSKGPSGAQQVRLHPIPKIAVPWHTVHIDLTGKLSGKSD
FT                 QKEYCSVLIDAFTKYVLLKHTLNLNSANAIKSVKDAVHLFGAPKRIIADRG
FT                 RSYDNTGFKDFCKDSNIELHLIATGTSRANGQVERVMRTLKSLLTIAETNS
FT                 DQSWQEQLGDIQLALNSTRCRVTGFTPIELMFGVQGSSLEISKVTTDSDNP
FT                 SRLDLDLVRSNASENIKKMAQAEVARFSRGKAKVKPFSVGDFVFVKSEERH
FT                 QTKLDRKYKGPFKITAILDNDRYELRHINGSNRVYKFSHENLREVPRGPSG
FT                 LLEASENYSDDDVTACTDELIDLVHETDLNNDCSVTDNRSNTLSANSDTMS
FT                 VGSDTISVSSGTSGIGNVEKLEK"
XX
SQ   Sequence 4805 BP; 1600 A; 951 C; 974 G; 1280 T; 0 other;
     gaagtgtcgg actcacctcc actgcagtca tcaaataact cggccaacaa tatgatgttt        60
     gaacaaatgt cattattttc atctgggatg gaagccatgc tgcaaagaat cgctgaaaat       120
     atgtcggttc accgacctag ccagagttcc ccaaccacat tggtcaattt tgacccggat       180
     gaaccggagg ctgatattgt aaattggtgt acgctgagcg aaatgatcat cgaacagaag       240
     aaattggatg gtgtagattt aattttaact ctcacacatt cacttaaggg tcgagctgct       300
     acttgcctca ctaaaataca acctggtaag atatcctggc ctactattaa agagatgctg       360
     atatcaaaat tctcgaaacc tatgatgatg caagaccatt tcgacctgat tattaaattc       420
     gaaatagaag gcaaagaggg accagctgaa gccggtatcc ggctatggca actcatagag       480
     aagattcccg acgccaatat gccagaacaa gtaatcaccg ggttcgcaat atcaatactg       540
     tcgcagtgtg acgaaagaat tcgtcgagaa ttaaactctg ttattattac caccaaaact       600
     caattatttc gcacactacg tggcttcaca ctgaaaagaa aaaacgagga tcctgcttca       660
     agtgattcag aaccaaaacg ctttcggagc ttattccgtg gaagctgtca tctctgcgga       720
     aaacttgggc atcgtggcgt agaatgccgc gatagacgac tactctcaaa aaatttcatt       780
     attccagcaa aacctgaaca acctcctcgt ccgtgggcgc gcagttctcg cccacaagtc       840
     agctgttacg tgtgcggtga tgcaaaccat gtagcttctg ggtgtcccat gcgctacaag       900
     aagaaagatg acaccgctcc aggagccgtg gcaggtccaa gcagatacgt caacgtgtgt       960
     tccagagctt cacacggtgt gttacagata agtggtgttg atttcccctt tatgtttgat      1020
     tcagggtcag aatgcagtct cataaaacaa agccacagta atttactcat tggcaagcgg      1080
     tttcatgaac aagtcacttt gagaggtgta ggtagtaata atatcgcgtc tacgttacaa      1140
     attaagtgcc ccactagtgt acaagatctg aggtttgatg tgttgtatca cgttttgcca      1200
     gacaaaaatc tcactgaaag cgtattgtta ggtcgtgata ttttagaggc aggattatcc      1260
     gtaaaaatca gtgacggaaa attaactttt gctaaaacca aaacctccaa ctcttgttca      1320
     aagtcggaaa tttgtgactt aaatatgata gacaccgatt tggtaaatga gaatagggat      1380
     cgtttaatta gaatactcaa gaaatattca ggttctttta ttcagaagct accaaccgcg      1440
     cgtattaaaa ctgctgagct gaaaattgat cttatagacc ctactaagat tgttcataga      1500
     agaccttatc ggttatcccc aactgaactg aaaatcgtta atgaaaaggt taatgaaatg      1560
     ttagttgcca atataattag agaaagttgc tcgccatttg caagccctat cttattagta      1620
     agaaagaaag atggaggtga tcgtatgtgt gtggattaca gagagcttaa tagtaacacg      1680
     cgccctgata gttaccctct tcccttaatc aatgaccaga tagacaaact acacggagcc      1740
     cgattttact gtagtatcga tatggcctct ggtttccacc aactgaaagt ccataaagac      1800
     tccatagaga aaactgcctt cgttacacca acaggccaat acgaattttt gactatgccc      1860
     tttggtcttc gaaatgctcc acaagttttc caaagagcaa tcaacgcagt attgaaaccg      1920
     cttaacgatg ataaaatttt gatttatatg gatgatgtgt tatctgcgtc agaaactatt      1980
     gatgaggggc tatcacgcct tgacaaattg ttaaaagcct tatccaactc cgggttttca      2040
     ttcaatttta aaaaatgttt tttatgaaac agaaggtcga atacttgggt tacgtaatct      2100
     catcagggga ggtcaggcca aacccgcgta aaattgaagc tcttcgaaat gtcccgaaaa      2160
     ctaccactgt aaaacaagtc agacaattaa tcggcttggc aacctatttt cgtcagttta      2220
     tcccaaactt ctcaaattta ttgaaacctc tatacccttt aacatcagga aaaggtacta      2280
     tctcatggac tacagagcat gacaaaattc acactaaaat tgtcaattat cttacatctg      2340
     aacccgtgtt aaggatattt gacccttctc tacctatcga gctacatact gatgcaagta      2400
     gtgaggggta tggcgcagtc ttaatccaaa aagtcgataa cctccctcac gtcgttgctt      2460
     actttagtca ccggacgtct gacgcagaga gccgctatca ttcgtatgaa ttggaaacgt      2520
     tggcagtggt caaatctgtg gagcatttcc gtcattatct ttatggccga aaatttactg      2580
     tgtttactga ttgtaatgcc ttaaaagcct cccattcaaa aaaagaccta acacctaggg      2640
     ttcacaggtg gtgggcaatt ttgcaatctt acgatttttc catcgtgtat aaggaagaaa      2700
     agaatatggc tcatgctgat tttttgtcgc gaaactccct tattagtcaa aacggtgcta      2760
     aggaaaaaat tgtaaatttt tccgagcttg aaagggggtg gctctctata gagcaacaac      2820
     gtgattccga aatttcagat ctaattgtta aggctaaatc caacgaatta cctcctgaaa      2880
     tctcgcacac atacgatgtt agacaaggta tactgtatag aaaaatagaa cgtggaaaaa      2940
     ctaccaagtg gctacctata ttgcctcgat ctttgatctg gtctcttata agccacgtgc      3000
     atactgaaat aaaacatcta gggtacgaaa aaacgctcga caaactgtat gaactttatt      3060
     ggtttcaaaa tatggctaaa tatgtaaaga aattcgtaga ttcttgtgtg atatgtaaat      3120
     cttcaaaagg cccatcgggc gctcaacagg tacgtttgca tccaatccca aaaatagctg      3180
     ttccgtggca taccgtgcac atagacctta ccggaaagtt aagcggtaaa agtgatcaga      3240
     aggaatattg ctctgtcctc attgatgcct ttacaaagta cgtattgcta aaacatacat      3300
     tgaatttaaa ctctgccaac gcaataaaat cagtcaaaga tgccgttcat ctatttggcg      3360
     ctccgaaacg aatcatagct gaccgagggc gttcatatga taacacagga tttaaagact      3420
     tctgtaaaga tagcaatata gaattgcatc taatcgctac gggtaccagc agggctaacg      3480
     gacaggttga gcgcgttatg cgaactttga agagccttct cacaatagct gaaactaact      3540
     cagaccaatc atggcaagag cagttaggag atattcaact cgcccttaat agtacacgtt      3600
     gtcgagtaac agggttcact ccaatagaat taatgtttgg cgttcaaggt agctcacttg      3660
     aaatctctaa agttacaaca gactctgaca atccctctag attagatctt gatttagtac      3720
     ggtcaaacgc ctccgaaaat ataaaaaaaa tggcacaagc agaagttgct cggtttagtc      3780
     ggggcaaagc taaagtaaaa cccttttctg ttggagattt tgtttttgtt aaaagtgaag      3840
     aacgacacca aactaaatta gaccgaaaat ataaaggtcc ctttaagatt actgcaattt      3900
     tggataacga tagatatgag ttgagacata taaatggttc taatagagtg tacaaatttt      3960
     cccatgagaa cttacgcgaa gtacctcgag gcccgtcagg cttactagaa gcttctgaaa      4020
     attatagtga cgatgacgtg acggcgtgca cagatgagtt aattgatctt gttcatgaaa      4080
     ctgatctcaa taatgactgc tctgtaactg ataatagaag taacactctg tccgcaaata      4140
     gtgatactat gtcagtgggt agtgatacaa tatctgtaag ctcaggcacc tctggtattg      4200
     gaaatgtaga aaaactagaa aaataaaatc ggtctcgcac tatttctgaa gaaactctat      4260
     ctaaatgttc tggttaccag gggagtaaaa aaaaaaaaag aagaaaaaaa aagagaaaaa      4320
     aaaaaaaaaa aaaaaaaaaa aaaaaaagag aattgaagtc attgaagggt ctatccggtc      4380
     caatgacttg gctaaaggga tgataatccg gactagcaaa aaaaaaaaaa aaaaagaaaa      4440
     aaaaaaagag aattgtaagt cattgcaggg tctatccggt ccaatgactt ggctaaaggg      4500
     atattaatcc ggactagcaa aaaaaaaaaa aaaagaaagg ctatagggat gtttatccgg      4560
     actagccgca ataacttgct acagggatta cgatccggtc tagcattatc cggtccagtt      4620
     taaaaactga agggataaca tcagggtttc tgacgaatta tgcgaaaccg aaccgaccca      4680
     gattgttaat atcatagacc acattttaag ttgcactggt taaagtcagg atgaacgaat      4740
     acgcttattg tctacagacc aaccataaaa aggcgcacga ggacgagcgc atgtcagtat      4800
     ggccg                                                                  4805
//
ID   Gypsy-2_BM-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   nscaf2953;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BM_;
KW   Gypsy-2_BM-I; Gypsy-2_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-375
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 980-980 (2010).
XX
DR   Genome; nscaf2953; Positions 3434109 3433735.
XX
SQ   Sequence 375 BP; 106 A; 81 C; 83 G; 105 T; 0 other;
     tgacggcgtt aacaatattt ctaataaaca tcacgtgcaa caggcgtgac tcacacaagc        60
     caggtgcgcc ggccgtgtcg ttccactcgt aaacaacagc tgcaacagaa gtgactcata       120
     agccagctgc gccggctagt ataaaaaggc ggaacgtgcc ttgcaatatt cattcgttcg       180
     actgcgtttg cccggtgcac ttactatatc gttgttacgt tgtgtgattc agtgactgtt       240
     gtacgtactg gttaaagttg gacaagtgtc aaagtgaatt gtcaagttaa catattgttg       300
     attaaattag aaatcaaagg tgacttcgtt ttacttggtg ttcaacgaaa taatgtctac       360
     cccgcaacct ataca                                                        375
//
ID   Gypsy-2_BrCo-I repbase;    DNA;    INV; 4767 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-4767
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1402-1402 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           238..1104
FT                 /product="Gypsy-2_BrCo-I_1p"
FT                 /translation="MSDTEEIIVEQPANETDGARNVVHANNNDGTIRSVQL
FT                 KLPPFWKAKPEIWFMQIEAQFATNAIRADTSKYNHLVGKLDTDILDKVSDI
FT                 VMNPPDNDKYLTLKNRLIKEFSVSDRKKLKHLFDNNSINEACKPSELLRKM
FT                 KDNTCNKVSDDLLQELWFNRLPQNIQSILSYSSEPLEQLSLMADKIYETMD
FT                 LDKIQTFTKQQPVNDCDLAQQFCKLEDKIDSLQKEINKSNSRIRSDSRNRN
FT                 KSKSPNRDKQSPSGFCKSHLDYGKRSWRCTPPCSYPDKSNIKKRNPKN"
FT   CDS           1032..4202
FT                 /product="Gypsy-2_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TVVALYTTLFLSRQEQYKKTQPKKLNSQSNQAQFDEG
FT                 KDISRLYIQEKNTGNTFLIDTGADISVIPPSYKERSHAPCQFQLHAANGTP
FT                 IKTYGSKSVTINLGLKRNIRWIFIIADVQQPIIGADLLQKFDLLVDIKNNR
FT                 LIDSKTSISSIGTTVGTRKNKNSIKTISNISVYYQLVNEFPDILDLTKFKS
FT                 KVKKHNVKHHIVTKCAPLFAKARRLHPSKLPIAKKEIDDMLKLGICRPSDS
FT                 PWATPLLIKEKPSGGFRPCGDYRRLNAATQPDRYPVPNIQEFNYFLHGKKI
FT                 FSVVDLVRAYNQIPVHEDDIQKTAIITPFGLFEFPFMTFGLCNAGQTFQRF
FT                 MNEVLKELDFCFVYLDDILIASENEEEHKKHLKILFARLNDYGVVINLQKC
FT                 VFGQKEVKFLGFLINEHGTKPLDNRVKSILDFPLPDTVTKLKRFLGMINFF
FT                 RRFMPHAAETQLPLFSCMKGNIKNDKTPITWTVTMIEAFNKCKSDLANATL
FT                 LAHPKTDAPIGLHVDASDYALGGVVVQFVNNKWQPLSFYSQKLNTAQLKYS
FT                 TYDKELLAIYEGIKHFRQILEGMEFTIFTDHKPLVHAFTQKADKATPRQIR
FT                 QLNYISQFSTDIRHLPGKKNVVADAMSRIETLNIVHSISLDSSIDYKLLAE
FT                 AQTRDMTVIDKVKKDTSLKVIKTDYHGTDIFCDISTGNLRPIVPPDFRKIV
FT                 FDKVHNFAHPGIKASTTTIKKDFVWPTMIKDIRNYCKSCIPCQKTKVSRHN
FT                 SSPITPIDMPNQRFDHVHLDIVGALPNSEGFKYVLTCIDRFTRWPEAIPME
FT                 NQTAETCAKQFFFHWIPRFGVPEVITTDQGKQFESDLFAELNKLLGTKRLR
FT                 TTAHHPQANGILERWHRIVKGAIKCHSTPDWMKTLPIVMLGLRSIILPHIN
FT                 ASVSEMVYGTNIRLPYHFFHHTEEDLSKDPSSFVEKLKRHMNDLQPVPSAN
FT                 HHKQKVFLFKNLDTCTHVFVRTDGYRKPLQPNYEGPYEVIKRDTKFFTLKI
FT                 KGKEKVISIDRLKPCYEIPLLNEIFKQAKHVTFANDLVHYSLNAYKSGNNI
FT                 "
XX
SQ   Sequence 4767 BP; 1769 A; 979 C; 724 G; 1295 T; 0 other;
     taattggtga ccccgactct gaatacaaag tcaatatcaa gctatacgct tcgatatatt        60
     aattgctaac aagcaactgt ttaaaataaa ttgttagcaa taacaagaat aaattcgatt       120
     gagttctacc gtccaaataa ttaaatttat ttgtgagaac aaaatcaata aacgcaaagt       180
     ttcctttgtc tcatctaaaa aatattttgc aaaataaaat tttttgcata atctacgatg       240
     agtgatacag aagaaattat agttgaacaa cccgccaatg aaacagacgg cgcaagaaat       300
     gttgttcatg ccaataataa cgacggcaca attcgatctg tccagttaaa attaccacct       360
     ttctggaaag caaaaccaga aatatggttt atgcagatcg aagctcaatt tgcgacaaat       420
     gctataagag ccgacacatc caaatacaat catctggttg gaaaattaga caccgatatc       480
     cttgacaaag tcagtgatat tgtaatgaac ccaccagaca atgataagta tttaactctt       540
     aaaaatcggt tgatcaaaga attttcagtc tctgaccgta aaaaactaaa acatcttttc       600
     gacaataatt caattaatga agcgtgcaaa ccttcagaat tattacgaaa aatgaaagac       660
     aacacttgta acaaagtctc cgatgactta ttacaagaat tatggtttaa ccgactacca       720
     caaaacatcc aaagcatttt gtcgtatagt tccgaaccat tggaacaact aagtctcatg       780
     gccgacaaaa tttacgaaac catggattta gataaaatac agacttttac caaacaacaa       840
     ccagtcaatg actgcgatct agcacaacag ttctgcaaac tggaagacaa aattgattct       900
     ttacaaaaag aaatcaataa gtctaactcc cgcatcagat ctgattcgcg aaatcgtaat       960
     aagtctaaat ctcctaaccg agataaacaa tctcctagcg gattttgtaa aagtcattta      1020
     gactacggta aacggtcgtg gcgttgtaca ccaccttgtt cttatccaga caagagcaat      1080
     ataaaaaaac gcaacccaaa aaactaaaca gccagtcaaa ccaagcgcaa tttgacgaag      1140
     gcaaagacat aagtcgctta tacattcaag aaaagaatac tggaaatact ttcttaattg      1200
     acactggtgc cgacatatca gtcattccac caagttataa agaaagaagc catgctccat      1260
     gtcaattcca acttcatgca gctaatggta ctcctattaa gacttatggg agcaaatcgg      1320
     tcactattaa tttaggccta aaaagaaata taagatggat ttttataatt gcagacgtgc      1380
     aacaacccat cattggagct gacctactcc aaaaattcga cttactcgtc gatattaaaa      1440
     acaacagact aattgacagt aaaacttcaa tttcttctat cggaacaacc gttggtacac      1500
     gaaaaaataa aaattcgatt aaaaccatat cgaacatttc agtttactat caattagtca      1560
     acgaatttcc agatattctt gacttgacaa aatttaaatc aaaagtgaaa aagcacaatg      1620
     ttaaacatca catcgttacc aaatgtgccc cactttttgc aaaagctcga agattacatc      1680
     cctctaagct tccaatagct aaaaaagaaa tcgacgatat gcttaaactc ggtatatgtc      1740
     gcccctcaga cagcccctgg gcaacaccat tactgataaa agaaaaacca tcaggtggtt      1800
     ttagaccatg tggcgattac cgacgtttaa atgctgcaac gcaaccagat cgatatccag      1860
     ttccaaacat ccaagaattt aactatttct tgcatggaaa aaagatcttc agcgttgtcg      1920
     atttagtcag agcttataac caaatacccg ttcacgaaga cgacatacaa aagacggcaa      1980
     tcataacacc gtttggttta tttgaatttc cattcatgac tttcggtcta tgcaatgccg      2040
     gtcagacgtt ccaacgtttt atgaacgaag tcctcaaaga attagacttc tgtttcgtct      2100
     accttgacga tattctaatt gcttccgaaa atgaagaaga acacaaaaaa catctcaaaa      2160
     tactttttgc tcgcctcaac gactacggcg tagttattaa cttgcaaaaa tgtgttttcg      2220
     gacaaaaaga agtcaaattc ctcggatttc taataaatga acacggaaca aaacctctcg      2280
     acaaccgagt taaatcaata ttagactttc ccttaccgga tacagtcacc aagctcaaac      2340
     gatttctcgg tatgatcaat tttttccgtc gcttcatgcc acacgccgca gaaacacaac      2400
     taccattgtt ttcttgcatg aaaggcaaca taaagaacga taaaacacct atcacctgga      2460
     ctgtgaccat gatagaagct ttcaacaaat gtaaatcaga tttagcaaac gcaactttgc      2520
     tagcgcaccc taaaactgac gcacctatcg gtttacatgt cgatgcttcc gattatgcac      2580
     ttggaggtgt agttgttcag tttgtcaata ataaatggca acctttatca ttttattcac      2640
     aaaaattaaa tactgcacag cttaagtatt caacttatga taaagaactc ttagccatct      2700
     atgaaggaat taaacatttc cgacaaattt tagaaggaat ggaatttacg atcttcacag      2760
     atcataaacc attagttcat gccttcactc aaaaagctga caaagcaacc cctcgtcaaa      2820
     tacgacaact aaactacata tctcagtttt caactgatat tcgacatcta cctggaaaga      2880
     aaaatgttgt tgctgatgca atgtctcgaa tagaaacatt gaacatagta cattcaatat      2940
     cacttgatag ctcaattgat tataaattac tagccgaagc ccaaaccaga gatatgacgg      3000
     taatcgacaa agtaaaaaaa gacacgagtc ttaaagttat taaaacggac tatcatggta      3060
     cagacatatt ttgtgatata tcaactggaa acttgagacc gattgttcct cctgattttc      3120
     gcaaaattgt ttttgacaaa gtccataact ttgctcatcc aggaatcaaa gcttctacaa      3180
     ctacgataaa aaaagatttc gtttggccaa ctatgatcaa agacattcga aattattgta      3240
     aaagctgtat tccttgtcag aagaccaaag tctcacgaca caactcgtcg ccaatcacac      3300
     cgattgatat gccgaatcaa agattcgatc atgtccattt agacattgtg ggtgcactcc      3360
     ctaattcaga aggattcaaa tatgtcctaa catgcatcga tcgttttaca agatggcccg      3420
     aagcaatccc tatggaaaac caaaccgctg aaacatgcgc taaacagttt ttcttccatt      3480
     ggattcctcg cttcggcgtg ccagaagtta taacaaccga tcaaggtaaa caattcgaat      3540
     cagatttgtt cgccgaatta aataaacttc ttggaacaaa gagattgaga acaacagccc      3600
     accatcctca agccaacgga attcttgaaa gatggcatcg gattgttaaa ggagcaatca      3660
     agtgtcattc aacacctgat tggatgaaaa cgctccctat tgtgatgtta ggattacgtt      3720
     caataattct acctcacatc aacgcttctg tttcagaaat ggtatatggt acaaatatcc      3780
     gtttaccata ccattttttc catcatacag aagaagatct ttcaaaagat ccaagttctt      3840
     tcgttgaaaa gttaaaacga catatgaatg atttacagcc tgtcccaagc gctaatcatc      3900
     ataaacaaaa agtttttctt ttcaagaact tagatacttg tactcacgta ttcgtccgta      3960
     ccgatggtta tagaaaaccc ctacaaccta attatgaagg accatacgaa gtaatcaaaa      4020
     gagatactaa atttttcact cttaaaatta agggaaaaga aaaagttatc tctatcgatc      4080
     gactaaagcc atgttacgaa attccgttgc tcaacgaaat ttttaaacaa gctaaacatg      4140
     taacttttgc aaacgatcta gtacactatt ctctaaatgc ctataaaagc ggcaacaata      4200
     tttgagaaaa gtacattcac ttctagtcgt tcgaaagaac aacaactaca agtaaataaa      4260
     ataaaatatt taaataaaaa atgatggaaa cacttaaaga cgcaaacacc ggtctaaagt      4320
     gtatcattga taccggaagt ccattttcat tattcccaca atttgaaatc aatggacgat      4380
     atacatccct atctatatac aacggaaatc aaatccttcc aatgtatgaa aaaatagaaa      4440
     agaatataaa gatcaataat atcaattatt cgtggcgttt ttacaccgcc aatattgatg      4500
     aaataatttt gggtgctgat tttatcgcag cataccaaaa tcaaaataca taaatcaatt      4560
     gaaaaattga cttatatcca aaaatcaatt ataaaatcca gaatcaccag catcatacga      4620
     tacaatgatc atcaaaatca aacaaacatt tggaaaaaca taaatcaaaa tcgccaataa      4680
     gttcctttca taatttggtt ggtcaaatgg aatcaaaaga attcacgcct caaatggata      4740
     ccgaaacctg atcctagggg ggaagtg                                          4767
//
ID   Gypsy-2_BrCo-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-183
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1390-1390 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 183 BP; 59 A; 43 C; 25 G; 56 T; 0 other;
     tgtggtaact cgtcaacact cgccaacact cgacaacata tcaattcatc acagtatgcc        60
     aatcaaatga ttccagacat agtagacatt gtatccccta tatatacggt gtatttgtta       120
     gactaagatt cattcaaata tatggattca aactgaaagc atcttgcctt ttcgttcccc       180
     ata                                                                     183
//
ID   Gypsy-2_BT-I repbase;    DNA;    INV; 4108 BP.
XX
AC   AELG01001160;
XX
DT   15-JAN-2011 (Rel. 16.02, Created)
DT   15-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the buff-tailed bumblebee: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BT_;
KW   Gypsy-2_BT-LTR; Gypsy-2_BT-I.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-4108
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the buff-tailed bumblebee.";
RL   Direct Submission to RU (15-JAN-2011).
XX
DR   Genome; AELG01001160; Positions  121038  116931.
XX
CC   Positions [3031-3561] - Integrase core
CC   'TCAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1096..4026
FT                 /product="Gypsy-2_BT-I_1p"
FT                 /translation="MELNLSLRRAFKWHFTFADVQTPIIGLDFLSHYGLLV
FT                 DPRKRRLLDTTTQLTTRGYAANCEQHMIKTVNGDSIYHQLLAKFPDLTRPP
FT                 AFGREKIRHGVEHHIETTPGPPVYCKPRQLAPDRLKQIKAEFATLIEQGVM
FT                 RPSKSSWASPLHVVLKKDGSLRPCGDYRALNARTVPDRYSPPHIQDFAQQL
FT                 HGRRIFSKIDLVRAYHQIPIAPEDVKKTAIATPFGLFEATNMMFGLRNAAQ
FT                 TCQRFVDEITRGLDFVYAYVDDFLVASETEEQHREHLRILFERLNHYGVVI
FT                 NLAKCEFGVDEITFLGHTVNAQGIKPLADRVKAVNEAPLPANIKALRRYLG
FT                 MIIFYRRFIPGAAKILQPLNDLLQGAKKGNMPITWSEEAKTSFSESKRALA
FT                 NATMLAHPIPDAPISLAVDASDFAIGAVLQQRANDTWQPLGFLTKPLNSAQ
FT                 RKYSAYDRELLAMYTAVKRFRHAVEGRNFIIFTDHKPLTYAFSKNPDKCSP
FT                 RQFRQLDYIGQFTTDIRHIKGLNNNADALSRIEAIGKSVDHKTLAAAQEND
FT                 EELRDIVNSDTSALQLKKIRFPDYDAEIYCDVSGDIVRPYVPKSLRRDVFN
FT                 ALHGLSHPGIRATQKLVKSRFVWPALNKDCQIWTRQCIPCQQCKITRHVST
FT                 PSGTFVELAGRFEHIHLDIIVMQYSQGCRYCLTCIDRFSRWPEAIPIPDME
FT                 ATTVASALLSTWIVRFGVPTKITTDQGRQFESNLFKKLCRMLGIKHLRTTA
FT                 YHPASNGMVERFHRQLKAAIKCHNSSNWVESLPIVLLGIRTAIKEDLSATA
FT                 AEMIYGTGIRLPAEFFVPAKQPTNAEFANRLRERMSEIRPLPTSQHGEKKT
FT                 FMFHDLQTSPYVFVRHDAIEGPLQPPYDGPYQVIQRREKTFTIRVKDKSVK
FT                 VSVDRLKAAFIVSEDIEHLERSAQTHDVFVPRKIFRPQSSEQAQQSDGDAR
FT                 AHYTTRSGRRVRFPDRFQAGLN"
XX
SQ   Sequence 4108 BP; 1156 A; 1130 C; 985 G; 837 T; 0 other;
     actggtgacc ccgacgtgat tttttagtgt aagaggtgac agtgatagac tagtcgcagt        60
     gtgaacagta ttgtccgcat ctcacacgat ggaaaaggag agtaaaccaa ctccagccgg       120
     cgcatcgttc cgcgtgccgc catttatgcc tacgaagacc gggatctggt tttcgattct       180
     agagaagtat ttcggcgtag ccggcattag ccacgacgac gagaaagcct taaccctcat       240
     gggattcctc gacccagaat acctcgcaaa gatagaggat accgtgacca acctccccgc       300
     caccggccag tacgataaat tgaagagcga gctgatccgc gccctgacag aatcggacag       360
     cgccaaggtt gaaaggttag tcgaacgcga agagatgggc gacagaaagc cctcgcaatt       420
     ttacaacgat ttaaagaaat tagccagctc tctcgtgtcc gatgaattca tcctaaactt       480
     gtggaagaat ctcctcccag atcgtatcag ggaagtcctg gctgaagtgg gcgatacgag       540
     cattgagaaa ctgatcagga ccgcggataa aattgacgag gcgtacaatc gtatcgggca       600
     gcgcccgcac aaggtggtca cactcgccga gccaccggca ccgcacgtag acaaaaacga       660
     cgcgctggcc gccgaggtca gcagactgcg gaaggaaatt aaggctttga aaatcggcga       720
     gcatcgtcga ccgcgaagac gctcgaactc cctcactcga ccccgccgcc gttcccgctc       780
     gtgagacaac ccgcgtcagg acggaatttg cttttatcat acgagattcg gcggtcgcgc       840
     cacgaaatgc accatcccgt gtaagtggaa gtcgggaaac gaccccagcc gtccgtaaaa       900
     gcggcagacg tcgatggctt gcgatctcgc cgcatcttta tcgtggatca gagaacgaaa       960
     acttcgttct tagtggacac cggtgccgac atcagcgttt atccccgaag caggctatcc      1020
     agggacgtaa agaaaacagc gtacaaacta ttcgctgcca atgggtagcg catcgcaacg      1080
     tacggcactt tagcgatgga gctgaacctg tccctcagac gtgccttcaa atggcacttc      1140
     acgttcgccg atgtgcaaac ccccatcatc ggcctagact tcctaagtca ttacgggttg      1200
     cttgtggacc caagaaaaag acgtcttctt gacacaacaa cccagctaac gaccagggga      1260
     tacgccgcca actgcgaaca acatatgatt aagaccgtaa atggggattc gatctaccac      1320
     caactgttgg caaaatttcc agatctaacg cgcccaccgg cctttgggcg agagaaaatc      1380
     cggcacggcg tggagcacca catagaaacc acacccggcc cacccgtata ttgcaaacct      1440
     cgccagctcg caccggaccg tctcaagcaa atcaaggcgg aatttgcaac acttatcgag      1500
     caaggagtca tgcgcccatc gaagagttcc tgggcatctc cactacacgt cgtcctaaag      1560
     aaggatggaa gtctgcgacc ttgcggtgac tacagggcgc tgaacgcccg cactgttccc      1620
     gacaggtact ctccacctca catacaagac ttcgcgcagc agctacacgg taggcgaatt      1680
     ttctcaaaaa ttgacttagt gcgcgcctac catcaaatcc caatcgcgcc tgaggacgtt      1740
     aaaaaaaccg cgattgcgac accattcggc cttttcgagg caaccaacat gatgtttggg      1800
     cttcgaaacg ccgcgcaaac gtgtcaacgt tttgtcgatg aaatcacgcg aggcttagat      1860
     tttgtatacg cgtacgtaga tgacttcctg gtagcttcgg aaaccgagga acagcaccgc      1920
     gagcacttgc ggattttgtt cgaacgtcta aatcattacg gcgtagtaat caaccttgca      1980
     aagtgcgagt tcggcgttga tgaaataacc ttcctaggcc atacggtaaa cgcgcagggt      2040
     ataaaaccgc tcgccgatcg agtaaaagcc gtaaatgaag caccgctccc cgcgaacatc      2100
     aaggctctcc gcaggtacct cggtatgatt atcttttacc gacgtttcat accgggagca      2160
     gccaaaatct tacaacccct caacgatttg ctgcaagggg cgaaaaaggg caacatgccc      2220
     attacctggt cggaggaagc caaaacgagc tttagcgagt caaaacgcgc cctagctaac      2280
     gctacgatgt tagcgcatcc tatacctgac gcgcccatca gcctcgctgt agacgcgtcc      2340
     gactttgcaa taggagcggt gttgcagcaa cgcgcgaatg acacttggca accgttgggt      2400
     ttcttaacta aacccttaaa ttccgcgcag cgaaaatata gcgcgtatga ccgcgaattg      2460
     ctcgctatgt ataccgcggt caagcgattt agacacgccg tagaggggag aaattttatt      2520
     attttcactg accataaacc cctcacttat gcgttcagta aaaatcccga caagtgttcg      2580
     ccgcgacaat tccggcagct agattatatc ggtcagttca cgaccgatat aaggcatata      2640
     aaagggctga acaataatgc cgacgcccta tcgcgcatcg aagccatagg aaaatccgtg      2700
     gatcacaaaa ccctcgccgc cgcgcaagaa aacgatgagg aactccgcga catcgttaac      2760
     tccgatacat ccgcgttaca gcttaagaaa attcgttttc cggattacga cgcggaaata      2820
     tactgtgacg tgtcaggcga catcgtacga ccgtacgtac cgaaatcctt gcggcgcgac      2880
     gtattcaatg cacttcacgg actttcccac ccagggatac gcgcgactca aaaactcgta      2940
     aaatcgcgtt ttgtttggcc cgcgctaaac aaagattgcc aaatatggac acggcaatgc      3000
     atcccgtgtc aacaatgtaa aataacgaga cacgtatcaa cgccgtccgg aacattcgta      3060
     gagctcgcag gacgattcga acatatacat ttagacatta tcgtcatgca atactcacaa      3120
     ggctgccgat attgtctaac atgtatcgat cgtttttcac gttggcccga agcgattcct      3180
     ataccagata tggaagcaac gaccgttgcc tctgctcttc tttccacttg gatagtgcgg      3240
     tttggcgtcc caacaaaaat aacaacagac caaggacgcc aattcgaatc caatcttttc      3300
     aaaaaactat gccggatgct cggcattaag catttgcgta ccacagccta tcaccccgcg      3360
     tccaacggga tggtagagcg cttccaccgg cagcttaaag ccgcaatcaa atgccacaat      3420
     tcgagcaact gggtcgaaag ccttcccata gttcttttag gcattagaac cgctatcaag      3480
     gaagacctga gcgcaacggc agccgaaatg atctatggta cgggcatacg attgccagcg      3540
     gaattttttg taccagcaaa acaaccgacc aacgcggaat tcgcaaaccg tctgcgagag      3600
     cgaatgagcg agatcagacc tctgccgact tcacaacacg gcgaaaagaa aacattcatg      3660
     ttccacgact tacaaacatc gccgtacgtt ttcgtacgtc acgacgcaat cgaaggccca      3720
     ctgcaaccgc cgtacgatgg cccctatcag gttatacagc gtagggaaaa aacctttacc      3780
     atacgggtga aggacaaaag cgtgaaagtc tccgtagacc gtctaaaagc cgcctttatc      3840
     gtgtcggaag atattgagca cctagaaagg agtgcacaaa cccacgacgt gtttgtacct      3900
     aggaaaatct tccgaccgca aagcagcgag caagcgcaac aaagcgacgg agacgcaaga      3960
     gcccattaca ccacgcgttc gggcaggaga gttcgttttc ctgaccgctt tcaagcgggt      4020
     ttgaattaag cggttagcaa gggcaccccc cgctaactta agtaagccaa cataaaagga      4080
     agtaacgtta acactggcag gggggtac                                         4108
//
ID   Gypsy-2_BT-LTR repbase;    DNA;    INV; 502 BP.
XX
AC   AELG01001160;
XX
DT   15-JAN-2011 (Rel. 16.02, Created)
DT   15-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the buff-tailed bumblebee: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BT_;
KW   Gypsy-2_BT-I; Gypsy-2_BT-LTR.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-502
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the buff-tailed bumblebee.";
RL   Direct Submission to RU (15-JAN-2011).
XX
DR   Genome; AELG01001160; Positions  116930  116429.
XX
SQ   Sequence 502 BP; 146 A; 125 C; 102 G; 129 T; 0 other;
     tgtagcggta ctcgtcgaca aaaatcataa tagtttttgc ccagtaaatc cgctacacaa        60
     gaaaccgtgt ttacccaaag acgagctaat tatagatcca tcgcccttag gcggttccga       120
     tcgttagtcc aaatccgtcg tttttgccgt gttcataggc cctcaagtca actacccaaa       180
     aagccaacaa ttgtaaacaa ggtcgagagc tcggcgcccg ttgggacgtt tcgagaacat       240
     cttcgaaatt caaatcccaa cgcctttcgt caactcccgc gaatataaat atagcggaca       300
     gggtagcgac gcattcttag ttatcgagag acacgagcag cagcaattaa ccgatacttc       360
     ttcgcgccga tctattagcg accgcgaacc gagacggcaa gtgtattgta cgactagtgt       420
     acgcattggg tatattctaa taaactacgt agttaggtat actcttgtgt ttgtgaaaat       480
     taatccacac cttatcacct ca                                                502
//
ID   Gypsy-2_BTa-I repbase;    DNA;    INV; 6251 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6251
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 581-581 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~100% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..4580
FT                 /product="Gypsy-2_BTa-I_1p"
FT                 /translation="MTANTEGTEDTYLALFQELKAQTKTIQQQLENQGQLN
FT                 EHISRMRNFGIPKGALMTKFEEYDPKKENFKFYKRRFENFLKIKNIDVTTD
FT                 AAACVPLLLNSMSKIYDQLVSLVTPKTPEEMSYKDLTQLIQEYFSPDLNTV
FT                 VAQHRFSLTVQKSGESITDYLATLKRCALDCDFKVKCTSENCNQEFDVSEM
FT                 FIQPQFIRGLKDDEIKDELLRTEATDFKTILKKALIMEISKENTKELSIKT
FT                 NGPKNATSDINAVEYRKPYKRHYNDKKENGNAYKNTGENRQNYNGSNNKNG
FT                 NSRTRRFRAKLEKLGIEKLCIKCGLQNHKTQDCFAKNLYCKGCNNKGHVVK
FT                 VCIKTLEKNSIAAVEEDSDSEKYQNWDELNVFDEINTVELHDDTQKFFAKL
FT                 EIEGKPCTLEVDSGATRTLIPVTMFRKLCPNLTLQSTQKIFRACNQATFKP
FT                 LGFTPVRVKYNDVESTEILFVVPDEFPALLGRPWIRRLNIHLSDLDDVNKI
FT                 DGPEDTAEDLPSFVKQITEKYAQTFQQKVGKIPNALAKLELRPNAKPIALK
FT                 ARNMILALRKPVEEELSRLEAEGIITKVETSDWASPLVVVPKPNNQVRLCV
FT                 DYKTTVNTQIETDHYPLPKIEETLNSLVASRYFCKLDVYKAYLHIEVDKES
FT                 AKIQTMITHKGTFKMNRLSFGIKVAPAIFHRIFEQLFADLPGVTSYFDDIL
FT                 VHAESIKTCREYLLKCLDRMQQNDIHINIEKCSFFKTEVKYLGHVIGYNSK
FT                 RPDPEKVRAISHMKAPQSVDHVRQFLGMATFYSSFIPNLAEATAHMRKLLR
FT                 KGIKFNWDKECENEFNVLKEILASDKVLIHFRDDLPVIITSDAGPKGIAAV
FT                 MSHSIEGSQRPVMYASRALSIAEERYSQLDREALAIVFAVKKFTYYIYGRH
FT                 FILETDNKPINHIFHPNKNIPPVTSHRLMRYAIFLQNFDFEIKLKKSNEIP
FT                 QADCLSRNPAKCKASFLENEIDEECTFLLEETFENIGTLQLNYETVSQETQ
FT                 KDKKLAEIKQILQNNANLSIQPPYKEYSIQGEALLWRNRLVIPESMQLLVL
FT                 KALHETHIGTEKMKQLARRHVHWTSINKDIEDYVKSCDKCATSKSAPKTAP
FT                 KHAWEAPTGNFERIHMDYTGPFEGHHIFVVVDAKSKWAEITCQKTAPTSKS
FT                 TINRLIEIFSRHGLPTFLVSDNATIFKSEEFTDFCARNGIQQRFIAPMHPA
FT                 TNGQCERLIQTLKQKLKAMGTEDSLQERIRKFLTRYYITPQADGKSPSELY
FT                 LHRQIRTGLDILKPMQKGPFSEITTKKVRQLTKGDTIYVKFMENNREKWKK
FT                 GEILEKYGNLHYKVRLFHNNYTLLRHINQIKLCPTTAAATENGPPRENKQA
FT                 ANETQQKEEEEELAMQLLAAMQTDQPDITKSLERTTIQAEETYVGTPENPG
FT                 PASKIPRRVILAPSPQPTTPGRKRGGQLLSSAQKAFISILRKSGRKSQPPD
FT                 RYKP"
XX
SQ   Sequence 6251 BP; 2237 A; 1355 C; 1168 G; 1491 T; 0 other;
     attggcgacg aggataaagc aatcataatc cacattcgcg gccgtagtga aaaaattaat        60
     cgtgttctat taagtttacg ctcggatcaa cttgatcact tgttccgctg ccggtagtgc       120
     acagataaga attttcaacc gcgccgcgcc gcacagttta cgcatcactc aacatgacag       180
     caaacacaga gggaacggaa gatacgtacc tggcgctctt ccaagagcta aaagcccaga       240
     caaagacgat tcagcaacaa ttggaaaacc agggacagct aaacgaacac atctccagaa       300
     tgcggaattt tggcatacca aagggagccc tgatgacaaa atttgaggag tatgacccga       360
     agaaagaaaa ctttaaattc tacaaaagaa ggtttgaaaa tttcttaaaa atcaaaaata       420
     ttgacgttac aactgacgct gcagcctgtg tacccctatt gctgaattca atgtcaaaaa       480
     tttatgacca attagtctct ttggttacac cgaagactcc cgaagagatg agctataagg       540
     accttacaca actaatacaa gaatatttta gtccagacct gaatacggtc gtagctcaac       600
     accgattttc cttaacagtg caaaaaagtg gtgaaagcat cacagattat ctcgcaaccc       660
     tgaaacgctg tgcgctggac tgcgatttca aagtcaaatg cacttccgag aactgtaatc       720
     aagagttcga cgtgtcggaa atgttcattc agccacaatt tatacgggga ttaaaagatg       780
     acgagataaa agacgaactc ttacgaacgg aagcaacaga cttcaaaact attctcaaaa       840
     aggcgctcat tatggaaatt tccaaagaaa atacaaagga attatccatc aagacaaatg       900
     ggccgaaaaa cgcgacgagc gatattaatg cagtagaata cagaaaaccg tacaaaaggc       960
     actataatga caaaaaggaa aacggaaatg cttacaaaaa tacaggcgaa aaccgacaaa      1020
     actacaacgg ctcgaataac aaaaacggaa attcccgtac acgcagattc agagcaaaat      1080
     tagaaaaact tggcattgaa aaattatgca taaaatgcgg cttacaaaat cacaaaactc      1140
     aagattgctt tgccaaaaac ctatattgta agggctgcaa taacaaaggt cacgtggtca      1200
     aagtttgcat taaaactctt gagaaaaact ctatcgctgc agtcgaggaa gacagcgatt      1260
     cagagaaata ccaaaattgg gacgaactaa atgtctttga tgaaataaat acagtcgaat      1320
     tacacgacga tacacagaaa ttttttgcaa aactcgaaat cgaaggcaaa ccatgcacac      1380
     tagaagtgga ttccggagcc acacgtacac taattccggt tacaatgttc agaaaattat      1440
     gccccaatct tacattacaa tctacgcaga aaatattcag agcatgcaat caagcaacat      1500
     ttaagccact aggatttaca cctgtgcgcg ttaagtacaa tgacgtggaa tcaacagaaa      1560
     ttctcttcgt agttccggac gaatttcccg cattactcgg aagaccttgg atacggagat      1620
     tgaatataca tttatcggac ctagatgacg tcaataaaat tgacggtcca gaagatactg      1680
     cggaagactt accttcgttc gtaaagcaga ttacagaaaa atatgcacaa acttttcagc      1740
     aaaaagtcgg gaaaatacca aatgcactgg caaaactgga attacgccct aatgcaaagc      1800
     caatagcact taaagctaga aacatgatac ttgcactaag aaaacctgtg gaagaagaac      1860
     tgagcagatt agaggcagaa ggcattatta caaaagtgga aactagcgat tgggctagcc      1920
     ccctggtcgt tgtcccgaaa ccaaataacc aagtaagact gtgcgtagat tacaagacca      1980
     cagtgaacac gcagatcgag acagatcact atcctttgcc aaaaatcgaa gaaacattga      2040
     attccctcgt tgcgtcgaga tatttttgca agttagatgt atataaagct tacttacaca      2100
     tagaagtgga caaagagtca gcaaaaatac agacaatgat tacacacaaa ggcacattca      2160
     aaatgaacag actgtctttt ggaattaaag tagcaccagc aatattccac cgaattttcg      2220
     aacaactttt tgcagactta cctggagtaa catcatattt cgacgatatc ctagtacatg      2280
     cagagtcaat taaaacatgc agggaatact tactcaaatg cctagacagg atgcaacaaa      2340
     acgacataca catcaacata gagaaatgct cattcttcaa aacagaagta aaatacttgg      2400
     gacacgtcat cggatacaac tcaaaaagac ctgaccctga aaaagtacgg gcgatttcac      2460
     atatgaaagc cccacaatca gtagatcatg tacgccaatt tttaggcatg gcaacattct      2520
     attccagttt tatcccaaat ctagcggaag ctacagcaca catgcggaag ctattacgaa      2580
     aaggcatcaa gtttaattgg gacaaagagt gtgaaaatga gttcaatgtt ttgaaagaaa      2640
     ttctcgcaag cgataaagtg ctaatccatt tccgggatga cttaccagtg attatcacat      2700
     ctgacgcggg accaaaagga atagccgctg tgatgagtca ctcgattgaa ggttctcaga      2760
     ggccagtaat gtacgcatca cgtgcgttat caatagcgga agagcgctat agccagctgg      2820
     accgggaagc acttgcgatc gtgttcgcgg ttaaaaaatt cacttactac atttacggac      2880
     gacatttcat cctggagacg gataataagc caattaatca catctttcat ccgaacaaaa      2940
     acattccgcc agttacatca cacagattga tgagatatgc aatcttctta caaaattttg      3000
     acttcgaaat taaattgaaa aagtcaaatg aaattccaca agcagactgt ttgtcacgca      3060
     acccagcaaa atgcaaagca tcatttctag aaaatgaaat agatgaagaa tgcacgttct      3120
     tactcgaaga aacattcgaa aatatcggca cattacaatt aaattacgaa acagtatctc      3180
     aagagaccca gaaagacaaa aaactggcag agatcaagca aatcttacaa aataatgcga      3240
     atttaagcat acaacctcct tacaaagaat actcaattca aggagaagca ctcctttgga      3300
     gaaacaggct agttatccca gaatcaatgc aattgctcgt tctcaaagca ttacacgaaa      3360
     cacacatcgg gacagagaaa atgaagcaac tagcgcgaag acatgtccac tggacaagca      3420
     ttaacaaaga tatagaagat tatgtaaaat cttgcgataa gtgcgccaca agtaaatcag      3480
     ccccaaaaac ggcaccaaag cacgcgtggg aagcacccac gggaaacttc gaaagaatac      3540
     acatggatta cacaggacct tttgaaggac atcacatttt cgttgttgtg gatgcaaaat      3600
     ctaaatgggc agaaataacg tgccagaaaa cagctccaac gtcaaaatca acaattaata      3660
     ggcttatcga aatattttcg cggcatggtt taccaacatt tttagtctca gataacgcca      3720
     caattttcaa gtcagaagag tttacagatt tctgcgccag aaacggaatc cagcagcggt      3780
     tcattgcacc catgcacccc gccacaaatg gacaatgtga aagacttatt caaaccctga      3840
     agcaaaaatt aaaagccatg ggaactgagg actcactcca agaacgcatt cgaaaattct      3900
     tgacgcgata ttacataacg cctcaagcag atggcaaatc gccgtccgaa ttgtacctgc      3960
     accgacaaat taggacaggc ctagatatct taaaacccat gcaaaaagga ccattctctg      4020
     aaataacgac taaaaaagtt aggcaactta ccaaaggcga caccatatat gttaaattca      4080
     tggaaaacaa cagggaaaaa tggaagaaag gagaaatttt agaaaaatat ggcaacctgc      4140
     attacaaagt cagattattc cataataatt acaccctgtt aagacatata aatcaaataa      4200
     aattgtgccc aaccactgca gcggctacag aaaatggacc tccaagggaa aataaacaag      4260
     cagcaaacga aactcagcaa aaagaagaag aagaggaatt ggcaatgcaa cttcttgcag      4320
     caatgcagac agaccaacca gacatcacta aatctctaga aagaacaacc atacaagctg      4380
     aggaaacata cgttggtact cctgaaaacc caggaccggc gtcaaaaatt ccgcgccgcg      4440
     taattttagc gccatcacca caaccgacaa caccgggcag gaagcgtgga ggacaattac      4500
     tcagctccgc gcaaaaggct ttcatctcaa ttctgcgtaa aagcggccgg aaatcgcaac      4560
     caccggatag atataagcca taatgtgaca aatccgggac taagataaac aatccggaat      4620
     tatcggatat atataaacaa tttttcttta taaaatttta tcagtctcaa tccaaactta      4680
     ctcacgctca agtctgcgat attactagtg tcaaaacggt gcgcaaagtt ttgtctcttc      4740
     gttccgcggt tcatttttaa gtgaagttac gttctcagct cgttcaacat gagtacggca      4800
     acgatttgct cagacagtag tgcattcaac gctctaatcg acatgggcga actgtcagat      4860
     tccatttact cgccgacgga caggcaacgg ccagagtcac cagtggccaa gaaacccaag      4920
     aacaaagaag tgaaaaaacc agcaccaaga agaaaaaacg aaatgttcct agaatcagca      4980
     ccggactctc aagtaacact agataatgtg cgcaaatgtt tactcgtgca gcattcatat      5040
     gagttcatgt cagctctaga aaagatgaca aacttgacag caggcagctc agggatgcta      5100
     aagtgcttga accagcaact gatcgccacg acgtggttct tccatacagt atgtcaatcg      5160
     ctggaagcca ataatccaga ggtttttgtt tccaaataaa atttcataaa ttatatacgt      5220
     gcggttagtt atcaaaacat ttccgtcagt attacgcata ttattactca tatacattac      5280
     tcacctgttt cgttcgcgga atattatatc aaaaattagt cattatccgt gttcgtgcta      5340
     taaactaatc accgtgcgtt gttcatggga aaaattcttt actatacgcc gccgctcgcc      5400
     gactcatcgc ttatcaaaag tgatagcgcc cgacctacgc caactattaa tgccggcgct      5460
     tactgcttcc tggatacagt gctctatcgt ccttcaacag tcgcgtgcca gattccatcc      5520
     cggacagtga cattagtttg tttacactgg ctctccaccg cggtaaccac aacttttggt      5580
     atcagtactt caaacgcacg gaggccccga caacgacaaa accacctatt gtcattctag      5640
     acggcgtttt acaaaaccag cctatcaaca tgggattcat cggtgatgat gaaaaaattg      5700
     aaatcatcaa cacgggagac gcgcgcggcc tttcactgcc tcacattgac cacatccaat      5760
     cattcttcat tgtcacgctg ttcctacttt ttgcgggata cctcatcaga agacactgcc      5820
     gcaagacaaa gcagcagaaa gtggcactct catatgcaat ggctcacttg ggacagcagc      5880
     agcagaaaaa acctacactc tttcctacgc aagtttagaa aagaggcata cgtatgtaaa      5940
     tttttttttt tttttcaatt attgtgttac atttttcatt ttcgtaagcg agttccaaat      6000
     atgtttatac gattttcaat tttctatcat aaaaatttaa tttattaaac agtaatttca      6060
     catttctttc cgaaaaattt ttttttaaat gaaattctcg aaatttcttg gggaaattag      6120
     gtagtagcat aaataaaaca aatttgtgtt taacgtaaat ttattagtac aacctttttc      6180
     ctgttataag tacatttttc tcattttttc cattttcata aagtaattga acatttccta      6240
     gggggggaga a                                                           6251
//
ID   Gypsy-2_BTa-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-321
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 607-607 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~100% identical to each other.
XX
SQ   Sequence 321 BP; 78 A; 89 C; 55 G; 99 T; 0 other;
     tgtcatagtc atattcattc atccaggtat tgcatcatga ttagatgact catatccgtt        60
     cagtcacgca ggaactccgt acatcctgat tactcatgcg tattgcctca gcttagaaag       120
     aaaccttgtg cattcgcgca acccatgagt cactaggact cttatctggt acacctttgt       180
     ataagtatag ccgtgctcgg cacctatctt cagtcttcag ccaatacact catgaatacc       240
     acggtacctc tcagtgtttt ctctttccct gtgttgaccc ccagttcttt tctcatacgc       300
     gtgtaaacca gtgacacgac a                                                 321
//
ID   Gypsy-2_Cfl-I repbase;    DNA;    INV; 4817 BP.
XX
AC   AEAB01029725;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_Cfl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-4817
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01029725; Positions     472    5288.
XX
CC   Positions [3299-3784] - Integrase core.
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..992
FT                 /product="Gypsy-2_Cfl-I_1p"
FT                 /translation="MGRHKSRRDSDRGNSKRKERQSRSPSTSHEEKKRREE
FT                 RFERLERIVESLDHRSHVRGSCIHRGDEQIIPVFDPSRDDLVIEKWIEHVD
FT                 DLAMQYDWDDRAIMRLIPGRLRGHARQWYDTRPRLAIMWTEMKETLMQQFR
FT                 KSVPFSKLFKEAALYESTPGQALGDYCFQKLNKMRKLDINIPDKYLIDAVI
FT                 GGITDENVARTVRSAQHSDANALYVYMTSLGNLSAKGEKNKAASAPIFKND
FT                 RKGQTSNRSTNQSQATNDENAKSADDKTAASDIKLNNRDRNVLIAVNRATS
FT                 RGNAVCRA"
FT   CDS           983..3214
FT                 /product="Gypsy-2_Cfl-I_2p"
FT                 /translation="MPRVECEQCRRLSHNADKCPFKKDVNAITEAKYLPNL
FT                 YERQIIVNGHKIKGLLDTGSSCSLLRESIVEKYKLPTAITPDNVLRGFAGQ
FT                 VTTSNQSAPCDIRVMNATARVDAVVVPDSHLVYDIIVGRDFLEQEHIVTIK
FT                 RGHKLILKQLPMINAKCENIVDVNFAELRTHDTVKINVESWEAGAQCTELI
FT                 REFRDCVAFSIKELGKTEATSLSIRCTVDIPVVYRPYRLAEAEKQIVRGII
FT                 QELLANSIIRESKSPYASPIILVKKKSGEHRMCIDFRKLNLVTVKDKYPMP
FT                 LIEEQIDKLGGNRYFTGLDLASGYYQVPVAADSIEKTAFVTPEGHYEFLRM
FT                 PFGLTNAPAVFQRLMDNVLGDLKNSVAFPYLDDIIIPSKTIAEGMMRLRQV
FT                 LKALRKHHLTLKLEKCSFFAQSIEYLGREISESGVQPGRCKIEAVRDMQAP
FT                 RSVKQVRQFLGLAGYFRKFVENFATIVEPLTKLTKKDVPWEWKIEQERAFN
FT                 IIKNKLTTRPVLAIFNPEVPAEVHTDASAIGVGAVLLQPVEGKMVAVAYYS
FT                 RQTTADQRCYHSYELETMAVVFALRYFRVYLLGTKFKVVTDCNALRTTFAK
FT                 RDLLPRIGRWWLEVQEYTFEIEYRAGTRMAHADALSRNPSPILLEVLQIDI
FT                 TEGDWVLAAQLQDEQLLRIRKILTDKRKTSETKHYFEEYLIKDDKIYRRLD
FT                 EKTQTWVVPRDARLQICRLCHDDAGHLGAEKTLERIKRTIGLQE"
XX
SQ   Sequence 4817 BP; 1473 A; 1007 C; 1246 G; 1091 T; 0 other;
     tatcagaagt gggattacaa agaacgagtg cgtgcttagt taatcgatct attaaaatat        60
     ataaatatat tttcctgttg taacgcaacg agatgggccg tcataagtcg cgccgcgaca       120
     gtgatcgcgg caattcaaag cggaaggaac gccagtcccg gtcaccatcg acgtcgcacg       180
     aagaaaagaa gcgacgagag gagcgtttcg aacgactgga acgtatagtg gaaagtctgg       240
     atcatcgatc gcatgtgcga ggctcgtgta ttcatagggg ggacgagcaa ataataccgg       300
     tgtttgatcc atcaagagac gatctagtaa tcgaaaaatg gatcgaacac gtagacgacc       360
     tggccatgca atacgattgg gatgatcggg cgatcatgcg attaataccc ggacggttaa       420
     ggggccacgc cagacaatgg tatgatacgc ggccacgatt agccattatg tggacggaga       480
     tgaaagagac tctaatgcaa caatttcgta agtccgttcc ttttagcaaa ctgtttaagg       540
     aggccgcgtt atacgagagt acccccggtc aagcactcgg agactattgt tttcaaaagt       600
     taaacaagat gcgtaagtta gatattaata tacccgataa atatctcatt gacgcggtga       660
     taggcggaat tactgacgag aatgttgcta gaacggtacg gtcggcgcaa catagcgacg       720
     cgaacgcgtt atacgtttat atgacgtcgt taggcaatct gtccgcgaag ggtgaaaaga       780
     ataaagccgc gtctgcacct attttcaaga acgatcgaaa aggccagaca tcgaatcgtt       840
     cgacaaatca atcgcaagcc acgaacgatg agaacgctaa gtcagcggac gacaagacgg       900
     ccgcgagcga tataaagcta aacaatcgcg accggaatgt tttaattgcg gtaaaccggg       960
     ccacatcgcg aggaaatgcc gtatgccgcg cgtagagtgc gaacagtgcc gccggttaag      1020
     tcataatgcc gacaaatgtc cgttcaaaaa ggatgtaaat gccataacag aagcaaaata      1080
     cttgccgaat ctatatgaaa ggcaaataat tgtaaacggg cataaaatca aaggactgct      1140
     tgatacaggg agtagttgta gtttgttgcg agaatctatt gttgaaaagt ataaactgcc      1200
     gacagcgata acacccgata acgtattaag aggtttcgcc gggcaagtta caacgagtaa      1260
     tcaatcggca ccctgtgata ttcgagtcat gaacgcgacc gcccgagtcg atgccgtcgt      1320
     agtaccggat agccatcttg tttacgatat tattgtcggc cgtgatttct tggaacaaga      1380
     gcacatagtc accatcaagc ggggacataa attgatactc aaacaattac ctatgattaa      1440
     tgccaaatgc gagaatatcg ttgatgtaaa tttcgcggaa ttacgaacgc atgacaccgt      1500
     aaaaataaac gttgagagct gggaggcggg ggcacagtgc acggagctaa ttcgagaatt      1560
     tcgggattgc gtagcgttct caataaagga actaggtaaa acggaagcta cgtccttgag      1620
     catccgttgc acggtcgata taccggtagt ataccgccca tatcgattgg ctgaggccga      1680
     aaaacagata gtaagaggga ttattcagga actcctagct aatagtatta ttcgcgaatc      1740
     gaagtcacca tacgctagtc ccatcatact cgtgaaaaaa aagagtggcg agcatcgaat      1800
     gtgcatagat ttcaggaagc taaatttggt tacggtaaag gataaatatc cgatgccctt      1860
     gatcgaggag cagatcgata aattaggggg aaatcgatat ttcaccgggc tagatctggc      1920
     ttcaggatac tatcaggtgc cggtagcggc agattctata gaaaagacag catttgtgac      1980
     gccggaaggt cactacgagt ttttgcgtat gccatttgga ttgactaatg caccggcagt      2040
     ttttcagcga ctgatggata atgtattagg cgacttaaag aattccgtag cttttcctta      2100
     cctggatgac attattatac cgtccaagac catagcggaa ggaatgatgc ggctacgaca      2160
     agtgttgaag gcactacgca aacatcactt aacactaaag ctggagaaat gctccttctt      2220
     cgcacagtcc attgagtatt tgggcagaga gatcagcgaa tctggagtac aacctggtcg      2280
     atgcaaaata gaagcggtgc gggacatgca agcacctagg tcagtgaagc aggtacgcca      2340
     gttcttaggg ttagctggtt attttaggaa gttcgttgaa aactttgcaa ccatcgttga      2400
     gccgctaacg aagctcacaa agaaagacgt accctgggaa tggaaaatcg agcaggaacg      2460
     agcgttcaac atcattaaaa acaaactgac gacgcgacca gtgctagcga tattcaaccc      2520
     tgaagtcccg gccgaggtac acaccgacgc aagcgcgata ggcgtagggg ctgttctatt      2580
     acaaccagtt gaaggtaaaa tggttgcagt agcatattat agtcgacaaa ctacggctga      2640
     ccaacgttgt tatcattctt acgagttgga gacgatggct gtagtatttg cgttgaggta      2700
     ctttagagtc tatctactag gtacgaaatt taaggttgtg actgactgca acgcattgcg      2760
     tacaaccttc gcaaagcgag atttgctgcc acgcatcggt cgatggtggc ttgaagtgca      2820
     agaatatacc ttcgagatag aataccgcgc aggaaccagg atggcacacg cggatgcact      2880
     tagtcgcaac ccgagtccga ttttattaga agtgctgcag atcgacatca ccgagggcga      2940
     ttgggtattg gcagctcagt tacaagacga gcaattgtta cgaattcgga agatcttgac      3000
     ggataaaaga aagaccagcg agacgaaaca ttactttgaa gaatatctta tcaaggatga      3060
     taagatatac agacggctgg acgaaaagac tcagacttgg gttgtgcctc gagatgcacg      3120
     gctgcaaata tgcagattat gtcacgatga cgccggacac ctcggcgcag aaaaaacatt      3180
     ggagcgaatc aaaagaacta ttggtttgca ggaatgagac gctttataac gaaatatgta      3240
     aacgcttgtt tgagctgtgc atattacaag aacacagctg gcaagcgaca atgtaaacat      3300
     tgagaaggtt ccagtacctt tccatacaat acatgtggat catgttggtc ctttcgaaac      3360
     gagccggaag cataataagt tcctcttggt agtagtggat gcattcacca aattcacaat      3420
     tgtggagccg gtaaagagcc agaagacgtg ttatgtcatt aaaatattaa ctaatatgat      3480
     ttatttgttt ggagtcccta acagaattat caacgataga ggaacggctt ttacatctca      3540
     gggatttggt acgttctgtc gccattacgg aataaaacat gtactaaacg cagttgcaac      3600
     accacgagct aacggccaat gcgaacggta caacaagacg attgtacaag cgctggcgac      3660
     cactacggcc ggacgggatc cacgcgattg ggattcggtc gttaagcagg ttcaaagtgc      3720
     gctaaacacg acgcacaaca agggcatcaa tacgacgccc atgaaagcac tcattggatg      3780
     tgagacacgg agcgctacag aagcgccgct attatcacag atccaagacg ttgtacatca      3840
     actggattta gacgagttac gtaaagatat caagatgcat attaataacg agcaacgagc      3900
     gcagaaggag cgctatgatc ggatgcgtcg agaggcaacg cgatacgatg aaggtaccct      3960
     agttttggta caaattacta gtgacccagc aacgggcagt agtcgaaagt tacatcctaa      4020
     gtttaaaggt ccattccgag ttcacaaagt tctcatcaat gatcgatatg aggtccaaga      4080
     cctacgagaa ggacataaac gaaaacgaac ggtggtggcc gccgatagaa tgaagctctg      4140
     gatcacgacc ccgagcgagt gagcgagtag gatactcgta tttattaagg attgatctgg      4200
     ggcggcacga cggtgcctct tcaggtcagt tattacgaac tgattccggc tgacacggtg      4260
     gtgtctagcc gagtcggtta ccacggattg acttggaatg acactacggt gtctttctaa      4320
     gccagttatt acggactgat ctgaggcggc acgacggtgc ctcttcaggt cagttattac      4380
     gaactgattc cggctgacac ggtggtgtct agccgagtcg gttagtgata ctacggtgtc      4440
     ttcctaagcc agttattacg gactgatcct ggcaggcaca gtggcgctgg tgaggtcagt      4500
     taacgatgac ggaccgacag aaagctatgg caagtaactt gatcgatcag acgaattacc      4560
     agccggtaat atgaaaatat aggaaaacat cgcgaacgaa aactccaaga gtctgaggac      4620
     agactccaac gcaggaaggc cgaatgtaag aaaattgcta cgggcctgta atgattagcg      4680
     cggggcccga atcgatggcg atacataaga cctacgatat cgccccgcca cgatgatacc      4740
     gagtggaggg gataggacat gcacgctagt gtcctgcgca cgtggtagac tggaagctct      4800
     cgctcaacga ggagtac                                                     4817
//
ID   Gypsy-2_Cfl-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   AEAB01029725;
XX
DT   26-JAN-2011 (Rel. 16.02, Created)
DT   26-JAN-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Florida carpenter ant genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_Cfl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-196
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Florida carpenter ant genome.";
RL   Direct Submission to RU (26-JAN-2011).
XX
DR   Genome; AEAB01029725; Positions     272     467.
XX
SQ   Sequence 196 BP; 61 A; 45 C; 28 G; 62 T; 0 other;
     tgtagaaaca cgtctcaacg aaaacgcaga ataaaaccac attcgtatag cttatcaacg        60
     gtattttctc ttatcccgtt gcagtactgt agaaacacgt cacgacgata acgcagaata       120
     aaaaccacat tcgtttagct tatcaacggt attttctctt atcctgttgc cattttgtac       180
     tacagttttt cttaca                                                       196
//
ID   Gypsy-2_CoFl-I repbase;    DNA;    INV; 10013 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-10013
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2271-2271 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 10013 BP; 3959 A; 1897 C; 1516 G; 2640 T; 1 other;
     atcgcacttg tcagaaaatg cgattggtac tgttgtattg ttatttccta atatgtaaaa        60
     tcataacatg taacatcatc gtgcaactgt caacgcagtc tgcaagaaca tcgctcattg       120
     gttgacctaa ttcaaccaaa ggcctctttt actcgctctg atgctataaa aacgcaccat       180
     caagaggaaa aatcgctctc tttacgtctg tcacctgtcc tctaaagttt tagtcaactc       240
     ttgactctcg cgactcgtga gtaccttata cacgtaaggc ataacgtgtt ggctgaggca       300
     actcaagtgc gtatcgagaa catcaaatag tatcggacta cgctaaggag cgaggtacag       360
     caaaggaggc ccgccgaaag tgattccggc gatagcagag gaagcagaaa tcgcaacatc       420
     ctactggcca cgaactcgtt cgtgtagttt aaggaaacac tgacggttac agcacgaagc       480
     attagggaac tccgaagcag cagtaacaat agtcagtgat agatgtaagt aaaatatcag       540
     taataaaatt tacgctgaac cttgttaaag tgacccgatt aaattgtatt taaaagaaca       600
     aattattatt aaattgcttt aataaagaaa tacattttaa aattacccat attatttaaa       660
     taaagattat tatttaataa aaaaataaaa gaacaaataa agctcacgag ctgaatccta       720
     agaaccccac gaatgacact taaataaaac agttaagacc atactctgaa caagtccggt       780
     cataacaaat tggcatccct tgtgtgttct tcaaatctta gttttgttaa aaaaaaaaaa       840
     aataaataaa taaaaatgcc cggaaatagt ggagaaaacc cgtcagtgga cgactctctt       900
     atacaacagt ttttaaatgt ttcacaagga ttaagtacga ctaattcatt aatgtgcata       960
     aatcaagcat ctcaacacat acctttttat gacggatact cgactccctt aaaagacttt      1020
     ttacaagatg tagaaaatgg acgaactcta ataacagccg ctcaagaacc tatgtacctt      1080
     cgcacagtta tttctagact caaaggcaaa gctcgagaga gtttagtagg ttctactttt      1140
     gcatcaattg atcagttaaa aaaacatctg aaacaagaat tttcaccaac caaatcatat      1200
     catgaataca tggcagaact tttaaatact acaatgaaac aaaacgaaac agttcgaaat      1260
     ttttatcata gaataatttc tcttacagaa actaccttaa cagccctttt gaccgaattg      1320
     aatgatgaga aactcaagac aacacaaaaa ccacaacttg aaaaattagc gctacaaacg      1380
     tttattaatg gtttacctga ctcgtggaaa ttaagtatag cactttcgaa acccaaagat      1440
     atccatgaag ctttagaagc tgctttactt actgaacgca cttgcccacc agtatacaat      1500
     caggccaagt acgtttacaa ggccgtaccc acgacctcta cttctacgac tcctgaatct      1560
     tcggtaccga acgttaccaa aattcctgtt cctgtctcta ctcagttcga ccaccaaaaa      1620
     aaattcgtca gttttaatga cccattgacc cacaatagaa attctttccc gcatacctac      1680
     gataaaaatg atgtcaagat gactcaatca aaattcgacg agtatggtcg aaaaattgta      1740
     catcccgcac ttagctacgc acctcaacga cgatcaagta ccccgccacc aagccgtaca      1800
     ccaccaccac cctggaataa tcaacctaat aactattatt accctccaaa tttccaagaa      1860
     tttccatatt ttcaaccacc acccttttat ccaccttact acccacaaat gtattatccc      1920
     tatcctcata ctcaaggcta tgcttaccat caacaagctc catttcaata ctacaaccaa      1980
     aaacaatacc aaaattataa tcaagaacga taccgagact ctcgccctaa ctctccaaaa      2040
     aacgagaacg agactcgccg gttggacgtg actgcgagtt tgaatccgat gacgcgtccg      2100
     aaatcaataa tggcaatgaa atctacagag ccttccgagc aagaacaata ggaaattcac      2160
     cagcagttaa attacgttgc gaaacatttc ggaaagattc ggaaattttt atattagatt      2220
     caggcgccga agtaaatgtc atcagttata acgcattaaa gaacggcaca gaaattaatt      2280
     gtgataatac aattgaatta gaaggaatag ccccacagcg aatatacact ctaggtaccg      2340
     taacggtaaa tttatttgat acagatcacg aatttcacgt tatgagtcca gaatcgccaa      2400
     taaataatgt atgtatttta ggagatccgt tctttacgca agaaaacgct agaatcgatt      2460
     acggattaaa tgcattaata gttgaaagca gaccaattga acctatacct tttctatacc      2520
     gagataataa aatcaactct ataaaattaa ttaaaaaaca agaaaaaccc ttaagattga      2580
     aaacgaaaca aaatttcgaa tcaacttgtg aaaaatttat ttttccattt cacgatgaag      2640
     ataaaatacc cacaccccca cgcgatacta tttattataa ttctcaagga tttaaagtaa      2700
     ataaaaacag aagttatatt taccagccag aacaagagta gctattaaat taccgactag      2760
     aaacaagatc accggccatg cgtatcttcg tagaattact accgtacccg gagtatatat      2820
     aggcgaggcg gtagtagatt gcaaagaagg tcactgttat acaatagcta taaacacaag      2880
     agatgagccg acaaaaatag aaatacccgc gcaagaactt gagccttttg atgtcatgga      2940
     atctgaagac tttttcgaca ctgacttcga agaaaacgat ttaaacaata taaaagatcg      3000
     cattgaattt ataatggata agctaaaaag atctcatcac tcaaaagcta gtttatcaga      3060
     aataagaaaa attgtagaaa aatacgctca cttattttac attccaggtg acccggctcc      3120
     tcgtacttct attatgacac ataaaatacc tacgacagac gaccgccctg tatatgtcaa      3180
     acaataccgc taccccttat cattacacca agaaattaaa actcaaatag aaaaattatt      3240
     agcagacggt acaatcataa aatcaaacag cccttacagt agtcctctct ggatagtacc      3300
     caagaaacaa ggacctgatg gaacaaaaag atacagatta gtaatagatt accgtaaact      3360
     aaacgaaaaa accatccctg atgcttatcc actaccaaac attactgaaa tattagagca      3420
     aatcggaggc tcaaattatt tctccgtttt tgatctagcc agtggattcc atcaaataga      3480
     agttgatcct gcagatagac ataaaactgc ttttagcaca cctaacggtc attatgaata      3540
     tgtaggaatg ccatttggac tatgcaatgc acctgcaaca tttcaacgac taatggacgt      3600
     aattttatca ggactgcaag gcatagagct atttatattt cttgatgaca taattgtatg      3660
     ttcaaaaact ttaaaagatc atgtgacaaa aattactcat ttatttgaaa aactttcgaa      3720
     atcaaaatta aaattacaac ttgacaaatg tgaattatta atgcccgaag taacttattt      3780
     aggacataaa ataggaaact acggagtaaa accagattca aaaaaattag aagctgttga      3840
     aaaatttccg aaaccaaaaa atcaaacgaa tgttagacag tttttaggat tagcgaacta      3900
     ttaccgtcgt tttgtcaaaa attttgcaga aattgcagag cctttaacgt ccttgttaag      3960
     gaaaggaaag aaatttgagt ggacagatac tcagcaaaaa agctttgaag agttaaggag      4020
     aatattatgc aaagcacctg tgttagcttg cgtcgatttg aataagccat tcatattaac      4080
     aacagacgca tctaatatag ctattggggc agtattaagc caaggagaac caggaaaaga      4140
     ccgcccaatt gcgtatatgt caaaaactct aaataaggct gaaagaaatt attctacaac      4200
     ggaaaaagaa tgcttagcag tagttgtagc agtccaatat tttcgacatt acttatatgg      4260
     caggaaattt acggtttacg gagatcatga accactatcc tggattgagt ctataaaaga      4320
     tcctatgagt aggctaaata gatggagagc aagacttcga ggttatagct atacttataa      4380
     gtacaaacct ggtagactaa atacaaacgc ggacgcctta tcaagaaatc caatagaatg      4440
     gaatgaagac gaaagtgata aagataattc ttcggacgaa gaaatatcat taaaagctcg      4500
     tttgctacct ataaaaccta aacaaactaa aacttcgata gctcgccaaa ttatgtcaaa      4560
     aaccaatcta atctcattcc gataccattg aaagcataaa atcagcacct aaagtwagaa      4620
     aaaataaacc tagagataca ctattaaaag tacctcgggg tatggaaggc ggacagggtg      4680
     aattaaatgc acctacaata gcggaaagat tgaaagcgag acgaagaaaa gaaacaccaa      4740
     gagctcaaat acaagactcg tcatccgaac ccgacaccgc gtctacttca cagtttagtg      4800
     acccacaatc cgacgcgcca ataccattac aagaacgatc atttatgcca agcttaataa      4860
     atgcacttga agaagagacc cctcagaata taatggaaaa ctcaagtgac gaaaattcgg      4920
     aaatcagtga aattgaagaa ataatcgaaa aaaattcagg tttttcacca agacgaacta      4980
     atattccaat caaacccagt acatcccgag ccaatgacgt taatcaaaaa tctgtaacat      5040
     ttcaacaaga tgaagactct acttcttctg atgaagaaac tttaaattta actacaataa      5100
     aaccaaaatt ttaatctact tttcgacgct ccgtacaaga ccaagtaaac aatacaaata      5160
     aaaataaaga gcagttatcc gattcaagaa ataacactta cattaataaa gattgcgaca      5220
     aagaaagatt tattgaagaa tggaatcaaa actcattatg gtgggatagt tacgataaga      5280
     aaaatgaaat accaagtaac agcattcttg gagaaataca atctttacct acatccccta      5340
     ccgaacgtca tgacggcagt tacttaaatc aagaacaaat aaattcactt ccatcgtcac      5400
     ctcaaaattc aatttctcct actatagtaa atgaatggat cgatgaaaca atgaacgaat      5460
     ttattgcaaa cggaaatccc ataagagcaa aatctccaat taaatcacac agaaatagtc      5520
     ctaccaaaaa taaattacaa aactctaatg atgaactata cagaagaagt ttatcaccta      5580
     tagaacaaaa tagtaatgaa gaaagagacg aaaacccttc tcaatcggaa aacatagaaa      5640
     ataaaattga ttacgatacc aagaaaactt ccaatcaaaa tattttacta caaacaagcc      5700
     atacagcagc attagaaccc atacagcaaa attggaactt agctcgtagc gaaaaagtaa      5760
     caagaaatat aagtcccgtt ggaaatccct ctaatatgac ttatgaaaca aataaattaa      5820
     catttttaag tactcgtgaa aatttaactt acacaaagga taactacatc cattttattt      5880
     ctgaaactgt agatttaaaa tcaataaaca ataaactact attagatata ggagctatat      5940
     caaaagaaga attatcaaat gttcaaccaa aattgggaga cgttattact acgaaaaacc      6000
     gaaatcgcta catattttca ctagtcgtga acaaaaactt tactgatgaa ataaaaccta      6060
     gcattttacg aacctgcttt aaaaatcttg cagatgcaat atcagtaaag gaagttacca      6120
     ccgctcgtat ttctaggaaa ggtgaactca ccgataatct ccctagagga gaaatgccat      6180
     caattttata cgaagagtta cgtcaccttc cccttacagt aaaaatttgt tttggcgcat      6240
     gttcttatct aaccctagaa gatagaaagg aaaaattagt tgaatgtcat actagtttat      6300
     tcggaggtca tagaggagta gtaaaaactt atagacgaat gagagaaaaa tattattgga      6360
     aaggaatgcg caacgacatt gctgaataca tacaaaaatg taaaatttgc caggaacaaa      6420
     aattagtcca cacaaaaact agagaaccta tggtaattac agacacacca tcagaagtat      6480
     tttacaaggt cgcaatagat acagtaggcc ctttcccaca aagtacatct ggaaataagc      6540
     acattttaac aatgcaatgc ttacttacaa aattttttat tgcagttcct gttcctaata      6600
     tacaagcaat aactattgcc gatgtgttat caagatattt tatttcaact ttcgacattc      6660
     ctagaattat tctcagtgac agatcaaaaa gtttcattaa tcaagtattg acagaagtat      6720
     caaaaattta tggattccgt ttagctctca ctagtgcata tcacccacaa tcaaatggtt      6780
     cattagagag aagccacgct atgttaaacg atttcttgag aactaacgct aaaaacaaaa      6840
     atgattggga taaaatggtt ccttttgcaa tgcatgagta taatacttca gttcattcag      6900
     caacaggctt tacacctttc aaacttgtct ttggtagaca ggcacgttcc ccaaatccac      6960
     ttccagacga attcaaatta gaaacataca gctcatatgc taatgacctt gcccgctgtt      7020
     tacatacaat acaagaaata gctcgtgaca gacttaaaat atcaaaacaa aatacaaaaa      7080
     cacgttatga caataagtca aagccacaga acttggaagt tggaatgaca gtctatgtac      7140
     tcaaagaacc ccgaaaagga aaattagata gattttataa cggaattttc aaaattaaag      7200
     aaatacatag taataataac gtcatattag aatcaggaaa tggaagaata attaacaaac      7260
     acattgacaa agtaaaacgt tgctacccat aaaaaaaaaa ataaaaaata aaaatttatt      7320
     tttgttgcag attgatccga tcaatatgtt gactaaaaac attgcctttc tgcttctgct      7380
     aacactaagg cctggtataa taaaaagtaa ggaagagata cctgcaaaac cttacgacaa      7440
     catgctttta gtaaataatc caggtatata ttatgaatac actaacgaag tcagactaat      7500
     tcgtaccgaa tggcacgtta ctattacgtt agattttcgt agcattgaag accaaactaa      7560
     actataccat gaacagctag atactgtatt tgaacagtgt actagagtac ttgaaaatca      7620
     agagtgcaaa aatttaatac caagatacac gttaaataat atgatttgtt taacaaaatc      7680
     aacatacgaa gatttaaaac tattttttgc acctgaaata caaatacata gtaaagaaat      7740
     aaactctaac aatatagtaa aagttatccc tagccacatg ataatgagac gagcaccact      7800
     agaattcgtg gggtggattt tgaaaaaatt atttggatct atggatgcgg atgatcgaga      7860
     taaaataaat gtggatataa ataatcttta caactctaca caaacaatat catatttaga      7920
     agcaaaacag actcatattg tacgcttaaa tctcgaaaaa tttatataga attagagaaa      7980
     aatggaagac ataatgaaaa agttatgaaa aatttggaaa gtttaaccga agaagcatgc      8040
     tgattagata atgataacag aaaaattgag tataaaataa aagtattaga atggactaac      8100
     tctttcgaaa aatctctatt tttcatacta aattcttaca aaacgcttat tagtgcggtg      8160
     gaaagcacgt cacaaggaca cctacatccg ctaatgatac aaaacgaaca actatcaaaa      8220
     atttgtaacg aaattaattc atacaaaaaa gagcatacgc taccatggga cgattcaacc      8280
     gtaacacttg aacgcctgca cgcactgtcc acaacaaacg cagtaataat agaaggtaga      8340
     ttagcagtta aacttagttt cccgttaata ggtaaagaac aattcagtaa ttatgccatg      8400
     cactcgattc cagttccaag aaatttacac tcagatttaa aaggatatgt cagcattgag      8460
     tcccgatata gtaacctgat cgtaagcaat aatctttaaa attattttcc ttaccgacga      8520
     aaaattttta aataattgca ttaaagataa gaagatttta tattgctgac cagatatgcc      8580
     tatttacgaa gataatataa ataatccttg caaattctct ttatttataa acccatcaac      8640
     agaagcatta aaaacttgtc aaatagcatt atataagtca accgaaattt attggataag      8700
     actaaaaacc actgaacaat ggttatattc tgcacaaaat actaccacga tacaagtatt      8760
     gtgtggaaac aatccttcaa tcacacaacc aactgaaatt aaaatacaag gtacgggaat      8820
     actaacgatc aacagtaact gtattgctca tgctcccagc tacaccctat atggagtcac      8880
     aacactagaa ttgacagaga cttactacta tagatcagag cttccctaca gttcagcaaa      8940
     tttattgaac ctccctgata tcaaaacaat caaaatcggc aatataactt cactcttaat      9000
     ctacaagagg aggaaaaaac cgaaataaat aaatgggcag agtcaaatga tgcaatagcg      9060
     ttaactagaa tggaggaaac cttagaggat atagcgataa aaaaaacaag ttaactatcg      9120
     aaatacagca ataatttttg gaagcctaat agtaaattta attgttacat tagtcattgc      9180
     cttaatttca ttaagatgca ttttaaaatt gaaaaaaaaa tccacttatt tactacaatt      9240
     tgtatataga gctcaaccga gtagatcaaa tgagcctcaa atttttataa cacaacataa      9300
     tactccgaaa aaagtacgaa aaattgtaaa aaatccagca ccaccagttc ccgacagaac      9360
     gacagatgat tatttgccga tacaaggcca ttattaattt attaaatgtt tctaaaaaaa      9420
     aatatacata tatataacat gtatatatat atagtaaaat attttactca taaattcaat      9480
     aattacacat tattaacatt atattaattt ccagaaaaac tttgaatgtt tgatctcaag      9540
     ccaagaaagt ctacaagaaa atcagcagta aaaattaaat cacatcgctc ctcttctctt      9600
     cctttaccta atcttcggta atgccaaacc actatcctac agtattaata aacgtcatca      9660
     ccacgatatt cactgcatac actggagagt attctaccta caccataaag tactttaatc      9720
     attaaactaa caaaacaaaa atatatgggt aaaacacaca gcataattaa tacctaacgc      9780
     acgcgtgtta actcaacaac ttgatacctg cactgcttta cgataaaagc aagagtataa      9840
     aatgattgat caatcatttt gcaaaaaaaa aaaaattaat aaaaacaaat aaacaaaata      9900
     aaataaatca aaaggaaaaa attaacatct attgtgataa ttcgtctcat cagctcgtgt      9960
     gaattctcga tcgatctgta gttgccgagg gcagcaacaa tctaggaggg ggg            10013
//
ID   Gypsy-2_CoFl-LTR repbase;    DNA;    INV; 437 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-437
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2297-2297 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 437 BP; 144 A; 68 C; 71 G; 154 T; 0 other;
     tgttacatcc cgagttgata cgaattatat tataactaaa aactatccgt ccatcaaaat        60
     tcagataaga cgtattgtga atataggcaa gctcatatga caagaggagc ttgtatgtca       120
     tttatgtgtg cgcgtgtgtg tattagcttt aaggtgaatg cttcataata tgctgacata       180
     gaatacggcc agcctcattg taaaaattca tgtatgtatg aatgaatagt tacttgctca       240
     ttaattgttt aattctgata atgtatacta attaaaaatt tgtaattcac acattacttc       300
     attatattca aaattgattg taaaatcctc agaaggatta atttcgaaat ttgtaagctt       360
     actgtcacaa ttgaacttgt atttggcgtt cttatattgc tgatgcgagc tttcatcatc       420
     actgacccaa aaactca                                                      437
//
ID   Gypsy-2_CQ-I repbase;    DNA;    INV; 2263 BP.
XX
AC   AAWU01034370;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_CQ_;
KW   Gypsy-2_CQ-LTR; Gypsy-2_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2263
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 383-383 (2011).
XX
DR   Genome; AAWU01034370; Positions    3738    1476.
XX
CC   'CTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..2113
FT                 /product="Gypsy-2_CQ-I_1p"
FT                 /translation="MSDSLARLPYLGQLHPRQEQFQQTSLRQGPLSHQRLL
FT                 PNPDLMIQMLTMFEQLVGTVQQTAQQQMEFMERFSTDAVQPPPNPAQNVDT
FT                 LPGNTKAFQTDSVRSHAVVINEHSVQQWRRCASVNFGGTPIRLPLDAASGG
FT                 PMLSSPSVRVKTASETGLSLDDEFRCDITTAGSTRNEPTIVTELHVSSFPD
FT                 SSPVPESVLHKVFNEELGKEVNLELKENRRPTVCPKRPVAYAVVENVDHEL
FT                 DKQQQQQLNIITPIVYSELAAPIVGVRKAIGSKTVLNTALQPRLYPLLAEN
FT                 AHGAYQQSIATMLARNPGASCHLEDVDVGGATQKEHVRNHFQDYALETRHD
FT                 NAPQLRIVRFKADRKHFAPSFELYLLLYDFASQYVSTDQFGHADVQRLINQ
FT                 HVRPEEDFAIARLRLEDISTQPDPLLRKIRRYVLEGWPTTKAADPKIERYH
FT                 TRADFDVGKACQMCTSVARSPPHSLPVPWPKPAGPWQRSCMDFAEPLNDDY
FT                 VVCTHRISVLATIAILHQMFPQLATVPYQPHGRAKRVVGILKRAVKKISEG
FT                 RGTIARTLNIFLSAYRCAPEVLDPEPHQKEFHRRGIAMRDGNQRDTRSHIN
FT                 QLRSCFKAGPAASPSVKPKALPLDVLLGEWKLASVPELPPLSPMQLTPRPP
FT                 SSLPAIPAEPNTRATYT"
XX
SQ   Sequence 2263 BP; 511 A; 762 C; 581 G; 409 T; 0 other;
     gtggcgacga gaatctgtcg aattcgtcgg agttgtcgcg gtttacgaag gtgggcgcca        60
     cctaacctgc aattccgaca cccacgtgca gctaaaggag gagcccccta gcggcatgag       120
     tgattcactt gcccggctcc cctacctggg gcagcttcac ccacgtcagg agcagttcca       180
     gcaaacatca ctccgccaag gcccactctc tcatcagcgc ctgctgccga atcctgacct       240
     gatgatccag atgctgacga tgttcgagca gttggtcggc acggtgcagc agactgccca       300
     gcagcaaatg gagttcatgg agcggttctc aacagacgca gtccagccgc ctccaaaccc       360
     ggcgcagaac gtcgacacgc tccccgggaa cacgaaggct ttccagacgg actcggtccg       420
     cagccacgcg gtggtgatca acgagcactc ggtgcagcaa tggcggagat gcgcgtcggt       480
     caatttcggt gggacgccga tccgacttcc actagacgcc gcatccggtg gcccaatgtt       540
     atcatcaccc tctgttcgcg ttaaaacggc ttccgaaacg ggattgtcac tcgacgacga       600
     gttccgatgt gacatcacca ccgccggaag cacccgcaac gagccgacca tcgttaccga       660
     gctccacgta tccagcttcc ccgactcgtc gccggtgccc gagtcagtcc tccacaaggt       720
     gttcaacgag gaactcggca aagaggtgaa cttggagctg aaagaaaacc gccgaccgac       780
     cgtctgcccg aaacgtccgg tggcctacgc ggtggttgag aacgtcgacc acgaactgga       840
     caagcagcag cagcagcagc tcaacatcat cactccgatc gtctactcgg agttggccgc       900
     cccgatcgtc ggggtgcgga aagccatcgg atccaaaacc gtcctcaaca ctgctctaca       960
     gccgcgcctg tatccgctgc tggccgaaaa tgcacacggt gcctaccagc agagcatcgc      1020
     caccatgctg gcccgaaatc ctggagcgtc ctgccacctc gaagacgtcg acgtcggtgg      1080
     cgcaacccag aaggaacacg tccgcaacca ttttcaagac tacgccctcg agacgcgtca      1140
     cgacaacgca ccgcagcttc gcatcgtccg gttcaaggca gaccggaaac attttgcacc      1200
     aagcttcgaa ctgtacctgc tcctctacga cttcgcctcc cagtacgtct ccaccgacca      1260
     gtttgggcac gccgacgtgc aacgtttgat caaccagcac gtacgaccag aggaggactt      1320
     cgctatcgcc agacttcgcc tagaggacat cagcacccag cccgatccac tacttcgcaa      1380
     gattcgccgg tacgtactcg agggttggcc aacaacgaaa gccgctgatc cgaagatcga      1440
     gcgttaccac acccgtgccg acttcgacgt cggaaaagca tgccagatgt gcacctccgt      1500
     agcacggtcc ccaccgcact cacttcctgt gccatggccg aaacctgctg gcccgtggca      1560
     gcgcagctgc atggattttg cggaaccact caacgacgac tacgtagtct gcacgcatcg      1620
     catctctgtc ctcgcaacca tcgccatcct ccaccagatg tttcctcaac tcgcgactgt      1680
     cccgtaccag ccgcacggac gagcgaaacg ggtcgtaggc attctcaagc gtgccgtcaa      1740
     gaaaatttcg gaggggagag gcactatcgc aagaactttg aacatctttc tgtcggcgta      1800
     ccgctgcgca cctgaagtgc ttgaccccga accgcaccag aaggaattcc atcgtcgagg      1860
     catcgccatg cgagatggca accaacgcga cacacgctcg cacatcaacc aactgcgaag      1920
     ttgcttcaag gccggacctg ctgcttcacc atcagtcaaa cccaaagcgc tcccgttgga      1980
     tgtcctgctc ggtgagtgga agcttgcgtc ggtacccgag ctgccaccat tgagcccgat      2040
     gcagttgacg ccgcgtccgc cctcttctct acctgcgatt ccagctgaac caaacacgcg      2100
     cgcaacttac acctgatctg gatcgctgct tctacaagaa cccggtgcaa caccatctcc      2160
     aatccctgcg tcgtcgtcct caacgagttc gtcgcagctg gcactcttct ccggcgcacc      2220
     gacagcgctt gcaagagccg accagctgtt ttaagagggg aga                        2263
//
ID   Gypsy-2_CQ-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   AAWU01034370;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_CQ_;
KW   Gypsy-2_CQ-I; Gypsy-2_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 384-384 (2011).
XX
DR   Genome; AAWU01034370; Positions    1475    1187.
XX
SQ   Sequence 289 BP; 58 A; 82 C; 65 G; 84 T; 0 other;
     tgttgtggac agaaccagtg cgcggagtgc ccccactttc cgcacgtcgc tggctcacaa        60
     gtggctgcca gtctgccacc ttgtgacgca agacagcgcg tcaattttta tgctagctgt       120
     caagattatt tgttgtgccc tttcactcta tttccggatc ttaacaagaa tacacgcgtt       180
     tttacatttt gttataaatt accgtgtttt atttgcgtat cgtgcgctga ttccgtggcc       240
     ctgccatagg ttcccacgcg acatcacgtc ccgcgcaccg gacacgaca                   289
//
ID   Gypsy-2_DAn-I repbase;    DNA;    INV; 8601 BP.
XX
AC   AAPP01018403;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DAn_;
KW   Gypsy-2_DAn-LTR; Gypsy-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8601
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018403; Positions   41991   50591.
XX
CC   Positions [6172-6648] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2483..3781
FT                 /product="Gypsy-2_DAn-I_2p"
FT                 /translation="MEEIKATLQKFDESLKTLLDQVVAVKEDIRKVGTRVA
FT                 TLEQDHERRNPAVIQPVPLVRPRTEYELKETSTLPDCVKELQTFEGEPGKF
FT                 VSWINRAQAVVNDYEIIIGKPLYRTIILYIRQKIRGDADLALSSYNVEDDD
FT                 WSEIKRVLSLHYADKRDVRTLEYQLSQLTQAGRTLDQFYNDVNNHFSLILN
FT                 KLKQSEHAPNVASALIEMYRDKALDVFVRGLNGDASKLLIIRGPKNLPEAY
FT                 SFCLELQNVSVRGNARMEHTNKFTPFFQPRYPTNASRYAPPMAPRFPPSFQ
FT                 PPVRAPAGATFNDGSSGNSRGFNRFQGPRPAIKMESNRSGQSYQSGFGMRR
FT                 GNDSVYGSAPGPNPFKKAQRLYHMAAVPSSVVTMPETDTQNSACQATYVDE
FT                 AVSAHDSSLEYDAPYHKADNENVNDEANFMPDAYPACHT"
FT   CDS           4327..6927
FT                 /product="Gypsy-2_DAn-I_1p"
FT                 /translation="MRGEVEKQIQELLDGGIIRPSASPYNSPIWIVPKKPK
FT                 PNGEKQYRMVIDFKRLNAVTISDTYPIPDINSTLASLGKAKYFTTIDLTSG
FT                 FHQIHMNEKDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDVLREHI
FT                 GKICYVYIDDIIVFGEDYQSHWNNLRAVFQNLRKAKLHVNLEKTRFLSTQV
FT                 EFLGYIVTQDGIKANDQKVKAIIDMKPPTNVKELKSFLGMASYYRKFVQDY
FT                 ATIAKPLTNLTRGEYARIKASQSRKVPIELDGVALQAFNDLKAILASSEVL
FT                 AFPDFSKPFHLTTDASDYAIGAVLSQDEQGKDRPIAYISRALNETEENYAT
FT                 IEKEMLAIVWALDNLRSYLYGAGSIKVYTDHQPLTYALSNRNFNAKLKRWK
FT                 SRIEEYGAAISYTPGKSNVVADALSRITTQVNYLGSTTCTASETDSLATVH
FT                 SALEDASQLIPHVEAPINAFRNQLVFDENQLEYSCEHPHVGYVRHLIPLND
FT                 GTMSGLVNILEKHLKPSIINGVKISETYLPSFQSTCFENFKLYKIRITQRL
FT                 VKDLSDPEQISEIIEREHRRAHRGPKEVTIQILEKFYFPRMTSTVRAQLSS
FT                 CDCCKRFKYERHPNKPELQPTPIPNYPCEILHIDVFTLEKKVYLSCIDKFT
FT                 KFAKLFPLQSKASIHLRETLLEALHYFTVPRMIVSDNERGLLCPTVLNYLR
FT                 TLEIELYYSPTQRSEVNGQVERFHSTFLEIYRCLKFEHPKFTSAQLALIAV
FT                 DRYNNSVHSVTNKKPVDLFLNRASRINYQGLSNFKEKTLEDVRGLIERNQA
FT                 MANIGHNKNRSEPKQYESGDKAFVANKQIKTKEKQRFRPEEVQENREVTIK
FT                 TKSGKILHKADLRN"
FT   CDS           7113..8525
FT                 /product="Gypsy-2_DAn-I_3p"
FT                 /translation="MSAARIYKYDAPVVPLQQGGVWRINGIFKLVHVIDIS
FT                 RMMQLVDETSRDAATLSDQRIKTITRHYLEQAAEGMNRVMRPTTRRARAVN
FT                 WLGSAWKWIAGSPDAEDWNAVLNSEKMISENNNQQIRINARLFDASHKSIQ
FT                 ELNDVVARVNAIDGDLHAVTATLHKAIILAGQVAEITRACQLAKTGVTNSN
FT                 LLDHEEIEAILMEVNDLPYQNAVEAVEFSRPTILSNGTTLLYVLALPKVSN
FT                 RRYELVRLYPTVSGGRQIVLEHHKFALNGEETYAVVGSCSTIGNITVCPEE
FT                 DLIALEENSCIPRLLKGGHASCSYLRSNEEVVQLVEDGTLFLSNYNGSLTT
FT                 LERDYQLEGTYIVQFNNEVVAVRNKNFTAHSANHPMALPPVLTNITVTGYR
FT                 PSLGYVDDINAQNTQAMSGVSRGVTFSYVLEASLTLVVFLTLFIIWRKLTS
FT                 TKGIPTTRVITEDLENTKKTSTTAHQ"
XX
SQ   Sequence 8601 BP; 2995 A; 1856 C; 1750 G; 2000 T; 0 other;
     ccttaactgg cgcccgagcg ggtaagtaga gtgaaggtgt attgtgtgtg ctggaaaatg        60
     ttttcccaaa aggaaaaaat caatcgaaaa ttaaagaaaa aatgtgcaaa tgtaagaaat       120
     ccttctcaaa gagaaaaagg tagagaaata ttcttcgttt tttcccaaac aaaattcccc       180
     aaacaaattc cccaaataaa atgaagataa atagtgaaaa tttaaacctg aagaaatttt       240
     tcccaaataa aataagaaag ggagaaaatg aatagtggaa aggttaaaag tgcaaatttt       300
     tttttttctc tctctccaaa ataaaataaa aatagagaga atgaatagtg aaaaggttaa       360
     aagtgtagaa attgtttttt cggaataaaa taaaaataga gagaatgaat agtgaaaagg       420
     ttaaatgtgt agaaattgtt ttttcggaat aaaataaaaa tagagagaat gaatagtgaa       480
     aaggttaaaa gtgtagaaat tgttttttcg gaataaaata aaaatagaga aaatgaatag       540
     tgaaaaggtt aaaaatgtgg aaattttttc caaaaataaa aaagggggga agatgaaatt       600
     ttttccaaaa taaaatggaa atagagaaat tgaatagtga aagatctaaa agtgtggaaa       660
     tttttcccaa aataaaataa aaaaaagggg gaagatgagg cttttccgaa ataaagtgaa       720
     agtaaggaaa tgaatagtaa aaagttaaaa gtggaggaat ttttctcaaa ttaaaataaa       780
     aaaaaggggg aagatgaaaa gggacatgtt ttaaagtgta ataatccttc cgaaaattaa       840
     gagaaaaaaa taggaaaagt gtagaggtga aataacgagg agtttttatt tttctttcaa       900
     gtaaataaag gaataaaatc aagaatgaaa aataacgtaa agttttcaga gtagagcaaa       960
     aaagagaggt cattaaaaca ttaaggtttg ggaaaagagc gggtaattta agaaccaaga      1020
     tgagattgaa atacaaaaac gaaaatgaaa tcaaagaatt acgaaatatg aaacgaaatt      1080
     aaaaagaaaa agaagaaaaa tatgtgttga aataaaagta atgaagtaat tacccaccgc      1140
     ggcggtttgc tatcatagca tattcgcggg tgcaaaaata ttacttcata taaaaaaata      1200
     agagaaccac cgcgaagaca ttcgcgtgtg gcaagaagta taacaaaagg aaaaaaataa      1260
     aatataaaaa agggttgtgt cgtgtcataa aagaaaagaa acggaattac ccactgcggc      1320
     ggtttgccac tggcatatcc gcgagtgcta aaacattgcc gtgcgtataa aaaaataaga      1380
     gaaccaccgt gaagcttatt cgcgtgtggc aagaaaaata aattaaaaaa taaaagataa      1440
     aaatggtgtg tggcaatctg ctggaaacgc taagaggtgt gcaatgcacc caaaaaaagc      1500
     tgcccagtgg gttgtgtgag caaccgtacc tgagtaggcc tgcgggccaa aacggaacaa      1560
     tacggaccac cgcgcccagt gccaagaaaa tacaagaaca cgagacaaac ccaaaaacca      1620
     gattttacaa cacacagaac aaaagaaaac ccaaaagcac gaaacaaaaa gaaaaactga      1680
     aacgaacgaa aaagaaaaaa ctaaaagtat gcaacaaaaa ttacacttaa gataggcaac      1740
     aaaaaaagaa aaacttaaag tatgcaacaa aaaaggaaaa ctgaaagtat acaagatatg      1800
     caacgaaaca gcacccaata cacactcact ctacacccta atagaattaa ataatattat      1860
     attctgccat tcctcatatt taaaaaaatt tctttttcta attatcagaa gaagttgaag      1920
     acgaacacga gcactccaag acacacagat atcgacacac agatagttgt aaagggtgag      1980
     taaagcgctt cctctcttcc tcctcaagac agtaaaatca gacaaaattg aatattcccc      2040
     ttaacataaa cacaatcaat aaaaaatcca aacaccattt acaaatatcg aaaattatat      2100
     tgtaagccaa aaacaactat taaaagtaca gctacaaaat tgaatattcc ccttaacata      2160
     aacacaatca ataaaaaatc caaacaccat ttacaaatat cgaaaattat actgtaagcc      2220
     aaaagcaact attaaaaata cagctacaaa attgaaataa aaaatccaaa caccatttac      2280
     aaatatcgaa aattatacta taagccaaaa acaactacta gaaaatttta ttaaagaaca      2340
     cagaagttca accatcattt aaagatatta aaattactta cttattattt ttgcattcga      2400
     cttacgcgtc attctcttga gaccccttga cataggtcta ttatattttt ctgaataaaa      2460
     catttttccc cttgctgttg aaatggaaga aatcaaggcc accctgcaaa agtttgacga      2520
     gagccttaag accctcttag atcaggtcgt agcagttaaa gaggatatca ggaaagtcgg      2580
     gacgagggta gccaccctcg agcaagacca tgaaagacgt aatcccgcgg taatccaacc      2640
     cgttcccttg gtccgtccgc gcaccgaata tgaattaaaa gaaacatcta ctttgccaga      2700
     ttgcgttaag gaactccaga ctttcgaggg ggagcccggg aaatttgtgt cctggattaa      2760
     cagggcgcaa gccgttgtca atgattatga aatcattata ggcaagccct tgtataggac      2820
     cataattctt tatattaggc agaaaataag aggtgacgcc gatttggcgc tttcttctta      2880
     taatgtggag gacgatgatt ggtcggaaat taagcgggtc ctctcgcttc actacgccga      2940
     caagcgagac gtccgaaccc ttgagtatca attaagccag ttgacacagg caggtagaac      3000
     cctagatcaa ttctacaatg acgtcaataa tcacttttcc ttgatcctaa acaaattaaa      3060
     acaatcagag catgcgccta acgtggccag tgccctgatt gagatgtata gggacaaagc      3120
     gctggatgtt tttgtaagag gactcaacgg cgatgcctct aaattactga taattcgggg      3180
     tccgaagaac ttgcctgagg catattcctt ttgcctggag ctgcaaaatg tatcggtcag      3240
     gggtaatgca cgaatggaac atacaaataa gttcacccca tttttccaac cccgctaccc      3300
     aacaaacgca tcacgctatg cgcctccgat ggccccacgg tttccgcctt cattccaacc      3360
     accagtaagg gcaccggcgg gtgcaacctt caatgatggt tcatccggta attcacgggg      3420
     ctttaataga ttccagggac cacgaccagc cattaaaatg gaatcaaatc ggtccggtca      3480
     gtcgtatcaa tccggctttg gcatgcgccg tggaaacgac tccgtgtatg ggtccgcacc      3540
     cggcccgaat cccttcaaga aggcacaaag attgtaccac atggcggcag ttccgtccag      3600
     cgtggtgaca atgcccgaaa ccgacacgca aaattccgct tgtcaagcta cttacgtaga      3660
     cgaagcggtg agcgcccacg actcgagcct tgagtatgat gccccatacc ataaggccga      3720
     caacgagaat gttaacgacg aggcaaattt tatgccggac gcctatccag cgtgccatac      3780
     atagaatacg tcgcgcgaaa tggcagcaag ttgaagtttc ttatcgacac cggcgcgaat      3840
     aagaactttg ttagccaaaa acactccgcc ggctccatcc ccttatccac tcccttttat      3900
     gttgaatctg ctgccggtaa tgttaaaatc acacattgcc tgataggacg attctttgag      3960
     cccattggca atgacgcgat taccaccttc tacgttctgc ctggtctgaa ttccttcgac      4020
     ggtatcatcg gtgacgatac tctcagggaa gcaaaagcct taattgatcg aaaaaacgat      4080
     cttctgctaa tatcccctgg tacccagata ccccttctgg cgagatattc ctccaatgtc      4140
     catgccctga ttgatggcga tcatgacgac gaaaccaaac aagcgctgga caatctactt      4200
     aaagaatttg caacaatttt tgaaccactt tcgtcagggg aatcggtaaa tacaaccgtt      4260
     aaggccgaaa tacgtactaa cactcaagac cccattttca ctcgcagtta cccatacccc      4320
     gcgaacatga ggggggaggt tgaaaagcaa atacaagaac tcttagacgg gggaataata      4380
     aggccatctg ccagcccgta taactctccg atctggattg tcccaaaaaa acctaaacca      4440
     aatggtgaga aacagtatcg catggttatc gacttcaagc gcctaaatgc ggttacgata      4500
     tccgatactt acccgatacc ggatataaat tctactctgg ccagccttgg gaaagccaag      4560
     tatttcacga cgattgatct gacgtctggc ttccaccaaa ttcacatgaa cgaaaaagac      4620
     atccctaaaa cggccttctc caccctcaat gggaaatacg aattccttcg tctaccattt      4680
     ggcctaaaaa atgccccggc aatcttccag cggatgattg acgatgtttt gagagaacat      4740
     atcggaaaaa tctgctatgt ctacatcgac gatattattg ttttcggcga agactatcag      4800
     agtcattgga acaatttgcg tgcggttttc caaaatcttc ggaaggccaa actgcatgta      4860
     aacttggaaa aaacacgttt cctctccaca caagttgagt tcttaggtta tattgttacg      4920
     caggacggta ttaaggcaaa cgaccagaag gtgaaagcaa taatcgatat gaagccccct      4980
     actaacgtga aggagctgaa aagttttctt ggaatggcct catattacag gaaattcgtt      5040
     caggactatg cgacaatcgc gaaaccattg acgaatttga caagaggaga gtacgctaga      5100
     attaaagcat cgcaatctag gaaggttccg atcgaactgg atggcgtagc tttacaggcc      5160
     tttaatgacc tgaaggcgat tcttgcctcc tctgaagtcc tggctttccc cgattttagt      5220
     aaaccattcc atttgaccac tgacgcgtcg gactatgcca taggtgctgt tctgtcccaa      5280
     gacgagcagg gcaaggaccg accaatagct tacatttctc gtgcattgaa cgaaaccgag      5340
     gaaaactacg ctaccataga gaaagaaatg ctggcgatag tatgggcatt agataatctc      5400
     agatcttatc tttatggcgc agggtcaatc aaggtataca ccgatcacca accacttacg      5460
     tacgcgttga gcaatcgcaa cttcaatgcg aaactcaagc gatggaagtc gcgaattgaa      5520
     gaatatggcg ccgcaatttc ttatacgccc ggtaaatcca acgtcgtcgc tgacgccctt      5580
     tcgcgtatca caacgcaagt taactacctc gggtcaacaa cgtgcactgc ctctgaaact      5640
     gactccttgg ctaccgttca cagtgcgctt gaggatgctt ctcaattgat acctcatgta      5700
     gaagcaccaa tcaatgcgtt caggaatcag ctggtttttg atgaaaacca gcttgagtac      5760
     tcatgtgaac acccacatgt tggttatgtc cgtcatttaa taccacttaa cgacgggacc      5820
     atgtccggtt tagtgaacat tctcgagaaa catttaaaac cctccataat taatggagta      5880
     aagatttccg aaacttacct cccatccttc caatctacat gctttgagaa ttttaagcta      5940
     tataaaattc gaataacgca aagattggta aaggatttgt ccgatccgga gcaaatctcc      6000
     gagataatag aaagggaaca tcgcagggcc cacagaggtc caaaggaagt cactattcaa      6060
     attttggaga aattctattt tcccagaatg acaagtacgg ttcgtgccca gttgtcatcg      6120
     tgcgactgct gcaaacgatt caaatacgag cgtcatccca ataaaccaga gttgcaaccg      6180
     acacccatcc caaactaccc gtgcgaaata ctgcatatcg acgtattcac actagaaaaa      6240
     aaggtttatc taagctgtat cgacaaattc acgaaattcg ccaaactttt tcccctacaa      6300
     tccaaggcat caattcacct ccgcgaaaca ctgttagagg cccttcacta ctttacggtg      6360
     cctagaatga tagtgtcaga caacgagagg ggtctccttt gtccgacggt attaaactat      6420
     ctccgcacat tggagattga attgtactat agccctactc agaggagtga agtcaacggt      6480
     caagtggaaa gatttcattc cacctttttg gaaatctacc ggtgcttaaa attcgaacat      6540
     cccaaattca caagtgcaca gttagcgctg atcgctgtag acagatacaa caactctgtc      6600
     cattcagtga ccaacaaaaa gcccgttgac ctattcttaa accgcgcatc gcgcattaac      6660
     tatcagggtt tatctaactt caaggaaaaa acacttgaag atgttagagg cctgattgaa      6720
     cgaaaccagg ctatggccaa tataggtcac aataaaaata ggtccgaacc taaacaatat      6780
     gaatcggggg ataaggcttt cgtcgctaat aagcagatta aaactaaaga gaaacaacgt      6840
     ttcagaccag aggaggtcca agagaatcgc gaagtgacaa taaaaactaa atcagggaaa      6900
     attctacaca aagcagactt gaggaattga agagcgcttt acgaccctct attttttaag      6960
     aaaaaaacaa accacaaaaa acttttttat tatttcaaca ctttcacaaa acattaaacg      7020
     tagaataaga tattataagt atgaatagca tatacactag cttttctttc attctagatt      7080
     aatgccctat aagcctcaca accatcggtc tcatgtcagc cgcgcgcata tacaaatatg      7140
     acgcacccgt cgtaccactg caacaaggag gagtatggcg catcaacgga atattcaaac      7200
     tggttcacgt catcgacata tcgaggatga tgcagctagt ggatgaaact agccgggatg      7260
     cggcaaccct gtcggatcaa cgcatcaaaa ctataacgag gcattacctg gagcaggcag      7320
     cggaagggat gaacagagta atgaggccaa caacacgcag agctcgagca gtaaactggc      7380
     tgggttctgc ctggaaatgg atagcaggat caccggatgc agaggactgg aatgcggtac      7440
     tcaactcgga aaagatgatc agcgaaaaca acaaccagca gattcggatc aacgctcgac      7500
     tcttcgacgc aagccacaaa tcgattcaag aactaaatga tgtggtagcg agagtcaatg      7560
     cgattgacgg agacctccac gcagttacag caacactgca taaggcaatt atcctggctg      7620
     gccaggtggc ggaaatcacg agggcctgcc aacttgccaa gacgggagta acgaattcga      7680
     accttctgga tcacgaggaa attgaagcca tactcatgga agtcaacgat ctcccgtacc      7740
     aaaacgctgt ggaagcagtg gaattttccc ggccaacgat actctccaat ggcacgacgc      7800
     tactatacgt cctggctctc cccaaagtat caaacaggag atacgaactt gtacgcttgt      7860
     atccaacagt atcaggcgga agacaaatag tgctcgagca ccacaagttc gcactgaacg      7920
     gagaggaaac gtatgcagta gtgggcagct gttccaccat cggcaatata acagtctgcc      7980
     cagaggagga tttaatagcc ttggaggaga actcatgcat tccacggctc ctgaagggtg      8040
     gccatgcatc ctgctcatac cttcggagca acgaagaagt cgtgcagtta gttgaggatg      8100
     ggacattatt cctctccaat tataatggat cgctcacaac actcgaaagg gactaccaac      8160
     tggaagggac gtacatagtc cagttcaaca atgaagtcgt cgcagtccga aacaaaaact      8220
     tcaccgccca ttctgcaaat caccctatgg ccttaccacc ggtactaacc aacattacgg      8280
     taaccggcta cagaccttcc cttggttatg ttgatgacat caacgcccaa aacacacagg      8340
     cgatgtctgg cgtctcacga ggcgtaactt tttcctacgt cttggaggct tctctaacac      8400
     tagtagtctt cttgaccctg ttcatcatct ggaggaagct gacctccacc aaaggaatac      8460
     caaccacgag agttatcacc gaagatctgg agaacacaaa gaagacatca acaacagccc      8520
     atcaataaat taattgatct gcgggacgca gacttttaga gggggaggag ttatcacccg      8580
     gcacattcgg gcccctccct c                                                8601
//
ID   Gypsy-2_DAn-LTR repbase;    DNA;    INV; 562 BP.
XX
AC   AAPP01018403;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DAn_;
KW   Gypsy-2_DAn-LTR; Gypsy-2_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-562
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018403; Positions   41429   41990.
XX
SQ   Sequence 562 BP; 164 A; 169 C; 104 G; 125 T; 0 other;
     tgcgcagcac tattcgcccc ctaccattta ctcagcacta ttcgccccta ccatttgctc        60
     agcactattc gccccctacc actacgccct gaactcgact cggactctta aacccgaatc       120
     cacaacatag gcacaattcc caatattcaa gtgctgtggg ttcaagtaca tccgggtatg       180
     tcacaagagt gcaactaagt cacaagtgtg caactatgta cgctgactaa agtgttgcgg       240
     gaaagctgac tccacatctg ccgacaccac acacgccgac gccacacacg ctgacaccgc       300
     gtatagaact ggagtgggag atcagcctat tccgaaccga tgaccggagg gtctcaactc       360
     ggcgtagcca gtcttctccg gaccgctgag catctaagcc gaacttggac atctttaacc       420
     caatctaaga attctacact taagaaccca ttcttaacac actttcgaac aattgttaac       480
     ttaagaaacc aacaataaat tgtaatcacg cacatcgaac catgaacgga gtattcttaa       540
     tcaggtgacc gaccattgga ca                                                562
//
ID   Gypsy-2_DAzt-LTR repbase;    DNA;    INV; 2253 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2253
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 806-806 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 2253 BP; 627 A; 516 C; 439 G; 670 T; 1 other;
     tgtaatattc gacgcctgtc gtgccttttg aatggcaacg gtttttcttc tgatattcgt        60
     tgggaaatag ttcgaaaaaa aaaatactga tttacgatca taggagcttt catagagctt       120
     tcggcccgaa cagctgtttt ggaacaaggt ggcaacgccg tcccattgtt tgcattccgt       180
     attgccctga aaattattgc taatttgctt ttagctaaag agccaggcaa cggaagaaag       240
     aaaaaaggaa gaaaaaaccg tggtctacct cccttggcga tgcagagagt cgacctcttt       300
     ctcctcgtgg ccgtcaaggt gtccagtcgt gatttttgtt atagccatta acctgtgtag       360
     cgcccgacac cacgccaatt gattgtgtat taaaattata acccgaagat ccccgtgagt       420
     acgggttcga cacagcaagg tggattgttt tgaaaaaata cattttcaca gacttttcca       480
     tataccgsga ggtgcaccta atcagcaagc acacggcagc acctctgtgg cggggtgcga       540
     ggttaccgca gtgatccagc agggaccaga ccataagccc acatcttccg gtagcggttc       600
     atacccgcac cgcgaatcgt ctagaacctc tttggtttta tattcgggtg cgagccgagt       660
     gatttcgagg acggagttcc tagcgcagga ggcagcagag atccaccaag caagaccgcg       720
     gcagctgatg ttgatgggct aaggaaagat ttaggcccac atatatggcc acagcaagag       780
     agttcccgct ggcctaacct cttgatcgtg ggtgtaccgc ggtcattgac cctcttgctt       840
     cgtcagctgt tttgacaccc ggtgccctgg agaaaccacg gatgaacacg caactcagtt       900
     tggaggcatc gaacaggctg cggcattagt ttgtagttgc gattatagac ctgatacgac       960
     aaccccgttt ggtttcgtcc gtttatgaat taaaatttgt gtaattatac ggctaaaata      1020
     tgaataagcc atgtttgctt gatataaacg gatagaaaga aaaaaaaagg gagcgcatgt      1080
     acatggtcaa aattgccaat cggatttttg tttggttata tatgtaaaat taatatgata      1140
     ttaacattgc agtcgagagt gtggttaccc cgcattcatc atctcatcat taatcatctc      1200
     atcatctaat catctcatca tataatcacc tattcacctc atcatccagc catctacaca      1260
     acgaaagatc tttctgcgtg ggagtcgtaa tggatatcag tatcgtgagt ggttataata      1320
     cccatttggt agttaataca catgaatttg cggtaacttt tctctctgaa cttgcaataa      1380
     tcccgaaatg accatataca tggaaagctg tttttttttc gattttcttg gctttgcatt      1440
     ggccagcgtt aaaacaaaac ttactcttgt ttaattttga atatttttct taaatcgcaa      1500
     atcattgaaa taacacctac acatatacca tattcccatt attacattac attattacta      1560
     ttaccttaca ctatcactat ttcactacat tattactatt atcaaatatt atcatcctaa      1620
     tacccctagc tatacgatta ttatgaattg atttcccctt aaccttcccc tattacaact      1680
     tataagccta tatatattct ttatccatat attataccga ttatttaatg ctaggtgcag      1740
     ttagagttag gttggttcgt accgtaaatg aattattttg gatttgctaa ataaaattag      1800
     tattgaaatg aatcaaggct aaatatcgtt aatagaaacc atgcagcatc gtcttgtagc      1860
     agtgtaatct accgacagct ctgttggagg gatccttaat ataaattgaa ttggccctta      1920
     aggatcatgg tagggtgggc gtgttcgcac ttggcgatca cacaaccaac agagacctga      1980
     ctattgacag tatccccttt ctcctatagc tgctgaccta tccctatgac ctcctgcatc      2040
     ccctctcccg ttctccattt catccttgta cgcgataact ataattttta aacacttctc      2100
     cctgcaactc tacgcgggag cccccaaatt ggtggtaccc tgtcctcaat gcccacaccc      2160
     agccgaccag agacaaaagc cgaagccagc gcgtacgtcc ttccatcaat ttgagtttca      2220
     tctgctccta acccctgtac gttgtatgct aca                                   2253
//
ID   Gypsy-2_DBi-I repbase;    DNA;    INV; 4241 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DBi_;
KW   Gypsy-2_DBi-LTR; Gypsy-2_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4241
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 823-823 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3214-3684] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1852..3939
FT                 /product="Gypsy-2_DBi-I_1p"
FT                 /translation="MELDEDSKTIMVVNTPLGLFQYQRLPYGIASAPAIFQ
FT                 RYLEQLLKGVEGCGNYLDDIIISAPTSEQHLKRIDQVLSILRENGIRCKKE
FT                 KCFFFKDEIEYLGRRISAQGILPDSSGLEAVKLLRPPSNLQQLEAFMGKVN
FT                 YYCNFIPNYSQLAAPLNQLRRKNVAYLFGPQQQQAFTALKSHIINATQLAH
FT                 FDENLPLVQQDGKERPIVFASKTLDKHQVKYSQIEKEGLSIIFGVKRFHQY
FT                 LYGRKFTLITDHKPLVTIFNPGKHLPLMTSNRLQRWAIILMAYNFEIQYRS
FT                 TSAHGNADALSRLPVGMDPDFDREEEACHIVTELSPPINSEIIRNHIEKDK
FT                 LLKQVPRYVTVGWPEKLQQGEEALSPYFNRKFALTINKKLLCLYTDASRVV
FT                 IPVTLQARILNLLHEGHWGIVRMKQLARQHVWWPTIDADIKSLAQSCSICK
FT                 CNNPAPPKEYQSWPAATTAWERIHIDFAGPILDSMWLICVDAYSQFPFVVQ
FT                 MSSTTTANTIAALSSIFAIEGYPKTMVSDNGPQLTADAFEEFCKRHGIKHI
FT                 TTAPFHPASNGLAERFVQTFKFSVKKNLKDGIPVRVAVTKYLASYRFTPNS
FT                 YGKSPAELIHGRPVRTVLSQLFEQPVEAKQSVTKYVPNQMVYARNYARGEK
FT                 WIEGSIDRPIGKMLFMVRTTNGYIKRHFNQLKPKFPASSSIEKPPEF"
XX
SQ   Sequence 4241 BP; 1361 A; 1001 C; 864 G; 1014 T; 1 other;
     tattggcgac gaggaaaaaa gtgaaatatt tagtcgaaag ataaaaacag ttaaatcgca        60
     taaatcgtgt cgagtagtcg ttgattttca tcaagatgcc ggcagatgat gatttgatcc       120
     agtcgatact tgctcaacag caagcattta caaaagacat tatggaacag caacaaaaat       180
     ggatgcaagc aatgatggat agaaacgctt ctccagggca gggtgattca agccacacgg       240
     gtgaattatc tgcgtgtcct ccattccaca aattcgacaa agacaatcaa aactgggagt       300
     cttaccttga acagttaacc cagcatttta acgcgtattc ggttagtgca gaaataaagc       360
     aaaaggctta ttttctttcg tggtggcata aacatattcg aactattgaa aaatctgttc       420
     gggagcaaca atttgaacac gtacacatac atgcaactca cagacaagtt aacggaacat       480
     ttcacaacaa aacgacacgt tgttgctgct cgctatgagt tttttaagag ggagatgaag       540
     cattcacaaa cgcacagaga gtgggttgcc gatttgcgcg ggatcgctcg ggaatgccaa       600
     ttcgtctgta atgccaacgg ttgttcttct aactatgtaa atgaaatgat tcgagatcag       660
     atcatagtac atacaccata cgatgccgtc cgtgcatctg ctcttcagaa gtcccagcca       720
     actcttgaag atgtgcttat agttgcagaa acctatgaga caactacaaa aaccgtggca       780
     gccctcaaag aaacagtatc aaagcaagac ccaataaacg cagttcacac ctaaaaaaaa       840
     aaccattcct tggtggtggt gaaagtgatg ccaaatcaaa caaaagttcg ctaaaatcat       900
     gctctggttg tggacacaat catgccagag agaagtgcaa gtttcgcgat gccgtatgtc       960
     acaagtgcgg tagaaaagga catatagctg ttgtatgcat gtcgaagcaa gacaaaagca      1020
     aatggcaaat gcaaaaaagt cgcaaatccg aagcaaacga aatcgaaacg attgaagctg      1080
     taaacagtct tacaggtcaa gtcaagtgtc agcagaacaa gattcttata gatcttgaaa      1140
     tacacagcaa agtgatatca ttccaaatgg attccggagc cacagcgtcc gtgatcaacg      1200
     ccactacata cgcgctgttg aataagccta aattactcaa gtgttcccga gtattacatg      1260
     cgtttggtca tacaccaata ccattgcttg gggagttgca cacaattgca aagtgtggtg      1320
     aaaaagagaa gcaagtggtc attatcgttg cgaacattga gacatcaaac aatctatttg      1380
     gtatggattt attcaacatt ttcggctttg atatcatgca agtatcaaac gttcaagagg      1440
     tgcacgaaga cgaattaggt gaccttttca gcacgtacaa cgaagtgttc gaaccagcca      1500
     tgggtgtcat aaaagacttc aaagcaagtg tctttttaaa gcagtcagca acaccaaagt      1560
     ttttcaagag ccgtcaaatt ccattcgcac agatggataa attcagagct gaggcagaca      1620
     gacttacaca agccggaatt tggaagccga tcaaattcag taattgggca tctccaattg      1680
     cgcttgcacc aaaaccaggt ggcgctattc gcatatgtgg cgttttaagc aagagtcaac      1740
     gcacagatcg atgttgaaca gtacccgcta ccgacaaaag agtctctgtt tcacataata      1800
     cgtcacggca agcagttcag caaaatcgat ttaaaggatg cctatcttca aatggaactg      1860
     gatgaggatt caaaaactat catggtcgtc aacacacccc ttggcctatt tcaataccag      1920
     cgccttccct acgggattgc cagtgctcca gcgatcttcc aaaggtattt ggagcagctt      1980
     ctaaaaggag tagaaggatg tggcaactac ttagatgaca tcattatctc agcacctaca      2040
     agcgagcaac atctaaagcg aatcgaccaa gttctcagta ttcttcgtga gaacggtatt      2100
     agatgcaaaa aggagaaatg cttctttttc aaggacgaaa ttgagtactt aggacgaaga      2160
     atcagcgctc aagggattct tccagacagc tcaggcttgg aggctgttaa actgttgcgt      2220
     ccgccttcta atctgcagca attagaagca ttcatgggta aagttaatta ctattgcaac      2280
     tttataccga actattctca gttggccgct cctttaaacc aacttcgtag aaaaaatgta      2340
     gcataccttt tcgggccgca acaacaacaa gcttttacag ccctgaagtc ccatattatc      2400
     aacgcgactc agctagctca tttcgatgaa aacctaccac tagtccaaca agatggcaag      2460
     gagaggccta ttgttttcgc atccaaaacg cttgacaagc atcaggttaa gtacagccaa      2520
     atcgaaaaag agggactttc tataatattc ggagtgaaac gttttcacca atatttgtac      2580
     ggccgaaagt ttacccttat aacggatcac aagccacttg taacgatttt caatccaggc      2640
     aagcatcttc ctttaatgac gtcaaacagg ctacagcgct gggccatcat tctcatggcc      2700
     tataattttg agattcagta tcgttctaca tctgctcatg gcaacgcaga tgccctatcg      2760
     cgccttcccg tgggcatgga tccggatttc gacagagaag aagaagcctg ccacatcgta      2820
     acggaactgt caccaccgat caattctgag atcattcgca accacatcga aaaggacaaa      2880
     cttctcaaac aagtcccacg gtatgttact gtaggatggc cagaaaaact tcagcaaggc      2940
     gaggaagcat tatcaccata ctttaatcga aaatttgccc tcacaatcaa caaaaaattg      3000
     ctttgcctat acacagatgc cagtcgtgta gtaatcccag taactcttca ggcgcgtatc      3060
     ctgaatctgt tacacgaagg acattggggc attgttcgaa tgaagcagct agctagacaa      3120
     catgtttggt ggcctacaat cgacgcagac attaaaagcc ttgctcagtc atgcagcatc      3180
     tgcaagtgca acaatcctgc tcctccaaaa gagtaccaaa gttggcctgc agcgacaaca      3240
     gcgtgggagc gaatccatat cgacttcgcc ggcccaatac tcgattccat gtggctaatc      3300
     tgtgtagacg cttactcgca gttcccattt gtagttcaaa tgtcgtccac tacaaccgct      3360
     aacacgatcg ctgcactatc atcgatattc gccatcgaag gatatccaaa aaccatggtc      3420
     agcgacaacg gtccgcagct tacggctgac gcctttgagg aattctgcaa acgtcatgga      3480
     ataaaacaca taaccacagc accgttccat ccagcatcca atggattagc agagcgtttc      3540
     gttcagacgt tcaaattctc agtcaagaaa aacctcaaag acggtatacc agtccgagta      3600
     gcagttacta aataccttgc ttcttacagg ttcactccaa attcctacgg aaaatctccc      3660
     gccgagttaa tccatggtcg tccagtccgt accgtactaa gtcaactttt cgagcagcct      3720
     gtcgaagcca agcaatcggt taccaagtac gtcccaaatc aaatggtcta cgctcgtaat      3780
     tatgcaaggg gagaaaagtg gattgaaggc tctatcgacc gtccaattgg aaaaatgctt      3840
     ttcatggttc gcaccacaaa tggttatatc aagcgccatt tcaaccagct aaaaccgaag      3900
     ttcccagcaa gcagctccat cgaaaaacct ccagagttct twtggatccc ggatattccg      3960
     ccctcttcaa attaacacca caacaacaag atcaaccacc acaacaacaa gaagatgaac      4020
     cggtaactcc gtcaaccgtt cagcaacgtc atcctgaacc tgagccaccc gagagctcca      4080
     catcatcgaa ccaacaacca aggcaaaaac aaccagcacg actttcatcc ggcatacctg      4140
     ttcgccaaag tagtcgtgtt cgccaagaag tagatcgttt taagcccaag gatttccgaa      4200
     aacctaaaaa tcctattcgt tcttaattaa aggaggagat g                          4241
//
ID   Gypsy-2_DBi-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DBi_;
KW   Gypsy-2_DBi-I; Gypsy-2_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-141
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 824-824 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 141 BP; 46 A; 31 C; 18 G; 46 T; 0 other;
     tgttatatat tgtcaatctc acatctgttt tgtattcctc cattctatac accttctatg        60
     tagtacttta agaatctggc aactctgtaa gcttcgcata caataaagca gtctgaaata       120
     gaactcaacg agaacacaac a                                                 141
//
ID   Gypsy-2_DBp-I repbase;    DNA;    INV; 6274 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DBp_;
KW   Gypsy-2_DBp-LTR; Gypsy-2_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 655-655 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4263-4742] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           667..1944
FT                 /product="Gypsy-2_DBp-I_1p"
FT                 /translation="MSWEYREVKQEVDSDDSEEIGFYHTTTQLESPTMNPE
FT                 MIQALITNAVNVALTAQEQRWRAEIESVRNQVSSLTVQAPQVEVYERVTPD
FT                 PTIECGVKLDIVKSLPTFSGSHDEYVSWRQAALDAYEVFKRYKGSETHYEA
FT                 VVIIKNKICGNARSLLTSHNTVLNFDAILARLDCTYADKTSLRVLRQNLEM
FT                 VRQGDADLMTYYDEVERKLTLVTNKIVMSHTMDTATILNKEVRDDALHAFI
FT                 AGPAQPKDLPSALALAREAENSIERSAFAASYAKAIEDKAPFYEGNRRNNK
FT                 GQGRQWKAEDKNPHFIPRQGQGKSHEDNLFPKCEDSETMHQNKVQPMEVDP
FT                 STAKFRQETSWRKPQSNNNYKRQNSSQRQSGQRRQLVNNIATAETEVADFE
FT                 EDVDTAELNDLLNFLGSAPDCRSSSDSWPVEH"
FT   CDS           2013..4979
FT                 /product="Gypsy-2_DBp-I_2p"
FT                 /translation="MPVKTPFTVSSIHGSSDVKNKCIMRIFGLDAPFFLLD
FT                 TLSTFDAIIGFDSLTRAGVALDLGDSVIKYGNVTEKLKFFDCENVNFTKIE
FT                 NIVVPNSAKAEFKKVILKRIKVFSTSNEALTFNTSVIATIRTKSDEPVYSR
FT                 LYPYPMGAADFVNNEIKELLSNGIIRPSRSPYNSPAWVVDKKGTDDNGIRK
FT                 KRLVIDFRKLNEQTIADRYPMPSIPMILANLGKAKYFTTLDLRSGYHQIYL
FT                 AEKDREKTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREEIGKICYV
FT                 YVDDVIVFSENETEHVKHIDIVLKRLIDANMKVAREKTKFFKESVEFLGFI
FT                 VTRGGTKTDPEKVRAIQEFPEPKTLFSLRSFLGLAGYYRIFIKNFASIARP
FT                 LTHILKGQNGSVSKNMSKKLPITLDETQRNAFDHLRNILASEDVILTYPDF
FT                 KLPFDLTTDASASGIGAVLSQNKRPITMISRTLKDRELNYATNERELLAIV
FT                 WAIGKLQNYLYGTQGVRIFTDHQPLTYAVSDKNTNTKIKRWKAFIDENKGK
FT                 VFYTPGKQNLVADALSRQHLNNLEVEAQSDAATVHSELSLSYTIETTDKPL
FT                 NCFRNQIILEEANQTLRRDFIVFGNRTRHVIHFNNKTLLVESVKEIINANV
FT                 VNAIHCDFPTLACIQHASRQEFPATKFWHCKNFVTDITNTNEQLEIVYAEH
FT                 NRAHRAAQENAKQILRDYYFPNMSKLASEVVANCKVCNKAKYDRHPKRQEL
FT                 GSTPIPSYVGEMLHIDIFSTDKKTFLTCIDKFSKFAIVQPLSSRAIVDVRA
FT                 PILQLVNFYHKTRTIYCDNEASFNSETITSLLKNQYSIDVINAPPLHSSSN
FT                 GQVERFHSTLAEIARCLKIDKKIDDTVELILRATVEYNRSLHSVTDCRPAE
FT                 VIHASSDEVNSAIRAKIDKAQQTNLDRINTSRQNRVFEVGEKVLVRNNKRL
FT                 GNKLTPLYSEERIEADLNTSVLIKGRVVHKDNIK"
XX
SQ   Sequence 6274 BP; 1978 A; 1493 C; 1335 G; 1468 T; 0 other;
     ctcgttaatt ggcgcccaac tactggataa tattacaaat taatcactct tcgaatctca        60
     ctctgaggaa tataaaatgt aagtgactgt gcgcctaaga tagcatccag gtcaatacgt       120
     gatattgtaa taaataaagt gtctacgaac tctccacacc ctaccattaa aaagtcaata       180
     aatatcgaca aaaattttac ctacaaactt gtgccagagc tagcaattta aattcaaatt       240
     taaaaaatac aacaaacaat tatttgaaat atatatttat ttgcattttt gagtggcgat       300
     cacgcatagg aaaacttgcc cctcaccttt ttcccttgat tattctgtaa agatacttga       360
     tttgcacgtg tttattttga aaaaaaaaaa cagaaatttt gtgtgattgc taagcctgtt       420
     gcttcgctcc aaccaattcc caactggagt ttttcttggg atgtataaat tctgcgggtt       480
     tactattata ttttctcttg caattaattg tgcttcaccc accgtgtagt gactcctctg       540
     aaataattgt ccatcgtcgc aagaccctga attggctaca ggtgttgtcc aactaaacgt       600
     cgtgcgcaaa cgcaaatttt cgcccttatt actgccgatt aacttactca gccccatttg       660
     cggccgatga gttgggaata cagggaagta aaacaggaag tggacagtga cgatagtgaa       720
     gaaatcggat tttatcacac aacgacacaa ctagaatcac caacaatgaa cccagaaatg       780
     atacaagcgc tcataacaaa tgccgtcaat gtcgcactaa ccgcacagga gcagcgctgg       840
     cgagcagaaa ttgaatcagt tagaaaccag gtcagctcgc taactgtgca ggcaccccaa       900
     gtagaagtat atgaaagggt aacaccggac cccaccatag agtgcggtgt caaattagac       960
     atcgtaaaat cgctcccaac ctttagtggc agccatgacg aatacgtgtc gtggaggcag      1020
     gccgcattag atgcgtatga ggtattcaag agatacaaag gcagcgagac ccactatgaa      1080
     gcagtggtta ttatcaagaa caaaatttgc ggtaacgcgc gatcactcct cacgtcccat      1140
     aataccgttt taaatttcga tgcaattcta gctaggctgg attgcacata cgcggacaaa      1200
     acgtccctaa gggtgctacg ccagaattta gaaatggttc ggcaaggaga tgccgacctt      1260
     atgacatatt atgacgaggt cgagaggaaa ctcaccctcg tcaccaacaa gatagtcatg      1320
     tctcatacta tggacacggc aacgatcttg aataaggagg ttagggatga cgcccttcat      1380
     gccttcattg cggggccagc acaacctaag gaccttccgt ccgcactagc tttagcgcgg      1440
     gaggctgaga acagcattga aagaagtgcg ttcgcggcat cctacgcgaa agccatagaa      1500
     gacaaggccc ctttttatga gggcaataga cgcaacaata aaggtcaggg aagacaatgg      1560
     aaagctgagg ataaaaatcc gcacttcatt cctaggcagg gccaaggcaa gtctcacgag      1620
     gataacctat tcccgaaatg cgaggattct gaaaccatgc accagaataa agttcaaccc      1680
     atggaagtag acccctcgac ggccaagttc agacaggaga caagctggag gaagccgcaa      1740
     agtaataata attacaaaag gcagaactcg tcccagcgtc aatcgggcca aagacgccaa      1800
     ctcgttaaca atatagccac agcggaaacg gaagtggccg actttgagga agacgttgac      1860
     actgccgaac ttaatgacct ccttaatttt ttagggagcg ctcccgactg ccgttcgtcg      1920
     agcgacagtt ggccagtaga acactaaaaa tactcataga cacgggggcg gcaaagaatt      1980
     acgttaagcc cgtaaaggag ctaaggaatg taatgccggt caagaccccc ttcactgtga      2040
     gctctattca cggctccagt gacgtcaaga acaagtgcat aatgcgcatt tttgggttag      2100
     atgccccatt ttttttgttg gacacactga gcacgttcga tgctataata gggttcgact      2160
     cgctaacgcg agcaggagtg gcattggact taggcgacag cgtaataaaa tacggaaacg      2220
     ttactgaaaa gctcaagttc tttgactgtg aaaacgttaa tttcaccaaa attgaaaaca      2280
     tagtggtacc aaattcggcg aaagccgaat tcaaaaaagt tattctgaaa agaataaagg      2340
     tgttttcgac ctctaacgag gcgctaactt tcaacacctc tgtcatcgcc actattcgaa      2400
     ctaagagtga cgaacccgtc tactccagat tataccccta ccccatgggg gcagcagact      2460
     ttgttaacaa cgaaatcaag gagctgctga gcaatggcat aatcaggcct tccagatccc      2520
     cgtacaacag ccctgcttgg gtagttgaca aaaaagggac tgacgataat ggcatcagga      2580
     agaagcgttt ggtaatcgac tttaggaaac taaacgagca aacaattgcc gatcgctacc      2640
     ctatgccaag cattcccatg attctggcga acttggggaa agccaaatac tttactaccc      2700
     tagacttgag gtcagggtac catcagatat acttggccga gaaagatcgg gaaaaaacct      2760
     cgttctcagt taatggaggg aaatacgaat tttgccgact gcctttcgga ttaaaaaacg      2820
     caggtagcat tttccaaaga gccatcgatg atgtgctgcg ggaagaaata ggcaagatat      2880
     gttacgtcta cgtcgatgac gttatcgttt tttccgaaaa cgaaaccgaa catgttaagc      2940
     acatcgatat agtgcttaag cggcttatcg atgccaacat gaaggtggca cgagaaaaga      3000
     ctaaattctt taaagaaagc gtagaatttt taggctttat agttactaga gggggaacaa      3060
     aaacagaccc tgaaaaagtc agggcaatac aagagttccc cgaacccaaa actctgttta      3120
     gcctcaggtc cttcctcggc ctggcgggct attacagaat ctttatcaag aattttgcct      3180
     ccattgccag gcctcttact cacattctca aagggcaaaa cggatcggtc agtaaaaaca      3240
     tgtcgaaaaa acttcctatt acgttggatg aaacccagcg caatgcgttt gaccatctgc      3300
     gtaatatcct ggcatcagaa gatgtcattc tgacgtaccc cgatttcaaa ttaccatttg      3360
     acctaaccac cgacgcttca gccagtggaa taggcgcggt attgtcccaa aacaagaggc      3420
     ccattacaat gatctcgcgt acgcttaaag atcgcgaact aaattacgcc accaacgaaa      3480
     gagaattgtt ggcgatagtt tgggccatag gcaaactaca gaactacctt tacggcactc      3540
     agggggttcg gatcttcaca gaccaccagc cgctgactta cgcggtatct gacaaaaaca      3600
     ccaacactaa aatcaagcga tggaaggcct ttatagacga aaacaaaggg aaggtgtttt      3660
     acacgcctgg gaagcaaaac cttgtagccg atgcgctgtc tcggcaacac ttgaacaacc      3720
     tagaggttga ggctcagtcc gatgctgcca cggtgcatag tgagctttcg ctctcataca      3780
     ccatcgagac tacggataaa cccctaaact gtttcagaaa ccaaattatt ttggaagagg      3840
     caaaccaaac acttcggcga gacttcattg tttttggcaa tagaactcgc cacgttattc      3900
     actttaataa caaaacccta cttgtcgaat ctgtaaaaga aatcatcaac gccaacgtcg      3960
     taaacgcgat ccactgcgac tttccgacac tagcttgtat tcaacatgcc tcgaggcagg      4020
     agttccctgc aacgaaattt tggcactgta aaaactttgt aactgacatt acaaatacca      4080
     atgaacagct ggaaatcgtt tatgccgaac acaaccgcgc ccacagggct gcgcaggaaa      4140
     acgccaagca aattcttcgt gactactatt tcccgaacat gtcaaaactg gccagcgaag      4200
     ttgtcgcgaa ttgcaaagtc tgcaataaag ccaaatacga tcgccacccc aagcgacagg      4260
     agttaggaag caccccaatt ccttcatatg taggggagat gttacatatt gacattttct      4320
     ctaccgacaa aaagaccttc ctaacttgca tcgataagtt ctcaaagttc gccattgtac      4380
     agcccttatc ttctagggca atagttgatg tacgggcccc tatactccaa ttggtaaatt      4440
     tctaccacaa aactagaacc atctattgtg acaatgaggc ttccttcaat tctgaaacga      4500
     ttacgtcttt gctgaaaaac caatacagca tcgatgtcat taatgcgcca ccgcttcaca      4560
     gtagctccaa tggccaagtg gaaagattcc acagcacctt ggcagaaata gccaggtgcc      4620
     tcaaaatcga taaaaaaatt gacgacactg tggaattaat tttgcgggct acggtagaat      4680
     acaatagatc gttgcactca gtcacggatt gtaggccagc ggaagttatc catgccagca      4740
     gcgacgaagt caactcggct attagagcca agattgacaa ggcgcaacag accaacctcg      4800
     acagaatcaa cacttcaaga caaaacagag tctttgaagt tggggaaaag gttctcgtgc      4860
     gcaataataa aagactcgga aataagctga cgccgctcta ctcagaagag cgcatagaag      4920
     cagacctaaa cacgtcggtt ctcattaaag ggagggtggt ccataaggac aatataaaat      4980
     aaacatctac accatccata ctcgccctta tgttatacag aactcgatac taccgcaatc      5040
     cccacaggct tgccgtgata ctaatcttac tgctgtctat agcgagcacg ctaaccaccg      5100
     actctctcac gcaaagtata ttccgttatt ggatagaatg gccaggagct tagatttcct      5160
     ggactcggca ctctaggttg tggtaggcac ggccgacgcg gaggacctct ataatattaa      5220
     aacaaagaag cagcgcaagc aataggcagg ttgtaatcaa cacagaaaca cattaactaa      5280
     cttacagatt cagtaaataa aattctcaag gaaaaaaggg acgggttagt tgacgccggc      5340
     caccttttcg aaacacttct agccaggaat agaatcctta tttcagagtt acaaaattgc      5400
     atgctcgcaa tcacacttgt caagaacaat attataaata tatttaatca caacgacctt      5460
     aaatctatct ttgacgaaca gctcacggag gtccccatag ttagccttat ggctgtatct      5520
     aagatataaa ttttttcaat ctaatgtttt tacatagtcc agtatcctag agttaagctt      5580
     atttgtaaaa aagtcctgct cttccctgtc gcacactacc atactatgct acaaatagga      5640
     gacaacatcg tggcggaatg cgatgacgga gtcctagcag tctccgattg cgcttctacc      5700
     aacttggcca cattttgcaa aaggcgtccc acgacactaa cccacaacta aaccttgcgc      5760
     caggcaatta cgtgcaggcg aggtttcagc aatctgaaac cccttacaat cgtggacgac      5820
     ggagtaataa tcgtcaacga aaaacttacg aggattacca tcgatgacgg tcccacagca      5880
     accatgatag agacccacct ttttactttt gaaaggattt gaacctcaat tactctgtgg      5940
     aaaagagcct gggaatcgcg gcctctccct taactaacat cacgggacac gatcacatac      6000
     taagtcagcc actaccacaa cgaatgaacg agcacaacct gcgtctgatg caggagctca      6060
     aagacgacgc gtcggctgga ggtgcaccaa ggatttggtt cgccgcggga gtcgccgtca      6120
     gcctcacact atgcggcttg gtcctgctcc aacaacactg caggcgcaaa cgagaggcat      6180
     cccaattacg atagtccatc gacgaattgg ctgtcaccga ggacggtgtc caatttaagg      6240
     ggggagtagt taacaaccaa ctcccagctt aggc                                  6274
//
ID   Gypsy-2_DBp-LTR repbase;    DNA;    INV; 513 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DBp_;
KW   Gypsy-2_DBp-I; Gypsy-2_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-513
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 656-656 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 513 BP; 134 A; 121 C; 102 G; 155 T; 1 other;
     tgagcaggcc aattcccttt ataaatattt accatttttt agtataatta ttattattac        60
     ttattattag tataattatg attattacaa actcttatac cactcatgta tgggccgtta       120
     tggacagggg gccgttaaag ctcatgggcc gttatggacc gtggccttgt ctcattggct       180
     gacagcgatc gtatgacttc tgcaaaagtc catggttagc ggtctgccac gggcatgcgg       240
     tcttgcatga gcttttgtta agtcttaagt tagttcatat ttwgtattca ataaagcaag       300
     agcaccagct catactaatg aaactccggc acttagtcgt caaatccttt attaactaat       360
     ataccgactg agtctctagg ccagcggtat cgaaggacag ttcccttcca ccatatctcc       420
     ttatctcagc ataggagcag tacggccaac cggctactaa ttattggaga cagcggcgag       480
     ggacaccact tcgaccgttc ccctcccctc aca                                    513
//
ID   Gypsy-2_DEl-I repbase;    DNA;    INV; 5029 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DEl_;
KW   Gypsy-2_DEl-LTR; Gypsy-2_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5029
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 512-512 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2417-2959] - Reverse transcriptase
CC   Positions [3995-4471] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           872..4948
FT                 /product="Gypsy-2_DEl-I_1p"
FT                 /translation="MDAKTILEMTVPLLRAKCSELGLETNGRKSALQDRLL
FT                 DHFGVDVGGDADEDAVSVSGSSNYQEAIPPSSSRFTLRDIQDSVSSFSGSE
FT                 QEDVNHWLSEFDDVAITVGWDSLQKFIYAKQLLIGAAKLYIRSISGVRGWN
FT                 ELKEALKEEFGKKLCSAEIHKILRQRQKQQKETCIEYLYSLMEISKPIKLD
FT                 EESLVSYFVDGIPDSKVNKAGLYRAKSIRELKDEIYIYEKMKGKGNIKENV
FT                 NKEAANKQTQGNFQRKCFKCNSEGHIAKDCKGEVVCYNCNKKGHISKQCQE
FT                 NKSKACVKHEPANVLEVKAAKGLIYKMLKVKDVTFVAMIDSGCDLCLMRED
FT                 IFRSFDGLKLKPVIKHLRGIGKGELVTIGSFDVDLESDDVCFSVTFHVAKQ
FT                 HELEYAAIVGNDVLQSVDLMFTSNGVKFISKEREFASTFKGMCVTEIVEET
FT                 SVLDKVDLSHLDKSQKLKVEQLVTGYKPVKSIDSPVSMKIVLEDDNPVYQR
FT                 PRRTSYENKCFIEKQVQEWLAEGIIVPSSSEYASPVVLVAKKDGSRRFCCD
FT                 YRRLNQKIKKDNFPMSLIDDVLDRLQGSKIFTTLDMMNGFFHVPIDEQSRK
FT                 FTAFVTHNGQYEFTHVPFGISNSPAVFCRYLTATLRDLIQSQSIVVYMDDI
FT                 IVPSKDENEGLLALEKVLKVASKAGLRIKWEKAQILKSKIDFLGYTIENGT
FT                 IAPTNEKIKAVVNFPIPQSRQALQRYLGLTSYMRRFIKDYALAAKPLSDLL
FT                 REKNSRKNDRNLTLTEEGLVSFNSLKQLLVSAPVLKLFDPLAETEVHTDAS
FT                 KYGFGGVLMQRDSEDQQFHPIEFMSRKTNASEEKYSSYELEVLAIVNALKK
FT                 WRVYLLGKRFTVITDCNAFAMTIKKDDLPPRVARWAMSLQEFEFKVEHRAG
FT                 TKMRHVDALSRLSCFLITDSTKSRLLKAQNNDNWIRAVKSVLSSNDVYEDF
FT                 FLKNNILYKDTVNELLVVPDSMEEEIISIAHKEGHFGIKKTRDILEKSYYI
FT                 PGIQPKVERVVKGCVECLIIESKRGKKEGLLNPIDKAQEPLGTYHIDHVGP
FT                 LTDTKKKYNHILAVVDGFSKFVWLYPTKSTGSEEVLEKLEKQAAVFGNPRR
FT                 IVTDKGTAFTSGLFKEYCSREGIQLLHITTGMPRGNGQVERIHKIVIPMLS
FT                 KMCQENPANWYRHVDRVQQIINSSPPRTTKYSPFKILTGLDMRKKDDDLRK
FT                 LFEDLGIEELNDEREEIREKAQENIEKVQQENRKNFNEKRKVETDYAIGEL
FT                 VAIKRTQYGTGMKLRPKFFGPYKITQKLNHGRYEVQKEGNQEGPKHTTTAA
FT                 EYMKNKKESKLRQAEVHIPLQLSQELNIFENIKIMIYLRICLKTLKL"
XX
SQ   Sequence 5029 BP; 1733 A; 873 C; 1186 G; 1232 T; 5 other;
     aattattggg ggctcgtccg ggatataaaa ctcaagaaca attaaaacta ctgtgcgtta        60
     acacataaag atcaagacac ggcagagtga tgtgaaagta aattaaaaag cgaaaacccg       120
     aagaaaatct aagttgttgc agaaattttg acgatataaa attcaaggtg gcaaattctt       180
     ttcataaaac gcaattaaaa gcttgagtgt gtgcgaacag tgtgaataca cggattcaca       240
     gagtgcaaaa gcaaatgcaa aaacttgaat gtatgcgtgt gcggaagtaa acagttaaaa       300
     tacgcagcaa ccaaaagatg atgaaatcga tgcaaaactt cgaagacgat ttgctgagct       360
     tgtaaaattt ttttgatgag gcgatcgcag gtgacgacga agtaagcgat tacctgtacg       420
     agggtgaagc aaagtaatcc tagcaacgac ggcgaaggat tcgcattacg aagagagcaa       480
     gagaaggacg acgtgcagga caggatctga cgagttttgg cagtcagagg caacaatagt       540
     tctgtggcga aatatgaamg caktgagwgg ttgcaaawcc aattgggtgc aaaaacagta       600
     acgaagacaa aagagcagag ctgtgacgac atcgttgaag agaacgagtt gcagtagaag       660
     agagcgaact ggactggagg agctggcaag aggacaagaa gagaacgtat tggatagtca       720
     aatccaattg ggtgcggtga gcgacaggaa gattcaatat aaaattctta tttgaaaatc       780
     ttttgattga atttgtttaa cgtaaattaa atattttctg tgtcaaattg aattttggaa       840
     aaccatttgt aaacggctta gacgcattac catggatgct aaaacgatcc tagaaatgac       900
     tgttcccctg cttagagcaa agtgttccga gttgggactg gaaacaaatg ggagaaagag       960
     tgctttgcag gatcgcttgc ttgatcattt tggggtggat gtgggcggcg atgcagatga      1020
     ggatgctgta agcgtcagtg gttcatccaa ttaccaagaa gcgattccac caagtagctc      1080
     aagatttact ttacgcgata ttcaggacag tgtgtcttcg ttttcgggct ccgaacaaga      1140
     ggacgtcaat cactggctgt ccgaattcga tgatgtggct attacggtag gctgggatag      1200
     tttgcagaag tttatttatg ccaaacagct tctgattgga gcagccaagc tttacatcag      1260
     aagcataagc ggwgttaggg gttggaacga gctaaaagaa gcattgaagg aagaatttgg      1320
     aaaaaaatta tgttcggcgg agattcataa gatattgcgg cagaggcaga agcagcaaaa      1380
     agaaacatgc attgaatatc tttacagtct tatggagata agcaagccga ttaagctcga      1440
     tgaggaaagt ttggtttcat acttcgtaga tggtatacca gatagcaaag taaacaaggc      1500
     agggctgtat cgcgcaaaat ccattaggga actgaaggac gaaatatata tttacgagaa      1560
     gatgaagggt aagggaaata taaaagaaaa tgttaacaag gaagcggcaa ataagcagac      1620
     tcagggtaat tttcaaagaa aatgttttaa atgcaacagc gagggccaca ttgcaaaaga      1680
     ctgcaagggt gaagtagttt gttacaactg caacaagaaa ggacacatct cgaaacaatg      1740
     tcaagagaat aaatcaaaag cttgcgttaa gcatgagccg gctaatgtgc tagaagttaa      1800
     agctgcgaag ggcttaattt acaaaatgct gaaagtaaag gacgtgacat ttgtagccat      1860
     gattgactca ggatgcgatt tgtgcttgat gagagaggac atttttagaa gttttgacgg      1920
     tctgaagctt aaacctgtaa ttaaacacct gagaggtatt ggcaagggcg agttggtaac      1980
     aataggatct tttgacgtcg acctcgaatc agacgatgta tgcttttcgg tgacttttca      2040
     tgtggccaaa cagcatgaac tggagtatgc tgcgattgta ggaaacgatg ttctgcaatc      2100
     cgtcgacctt atgttcacct caaatggagt caaatttata tcgaaagaga gagagttcgc      2160
     atctacattt aaaggtatgt gtgtcactga gatcgtcgag gaaacttctg ttttagacaa      2220
     agttgacttg tctcacctgg ataagagtca aaaactaaag gtagagcagc ttgttacagg      2280
     gtataagccg gtaaaatcaa ttgattcacc tgtgagcatg aaaattgttt tggaagacga      2340
     caatccagtt tatcagcgcc caagacgcac atcgtatgag aacaagtgct ttattgagaa      2400
     gcaagtgcag gaatggctgg cagaaggaat tattgtgccc agctcctcag agtatgcatc      2460
     accagttgta ctagttgcaa aaaaggacgg atccagaaga ttttgctgtg attaccgacg      2520
     actaaatcaa aaaatcaaga aagacaattt tccgatgagt ttaattgacg acgttctcga      2580
     caggttgcaa ggatcaaaaa tatttactac tctcgacatg atgaacggat tctttcatgt      2640
     accgattgac gaacaatcca ggaagtttac agcgttcgtg acgcataacg ggcagtacga      2700
     attcacgcat gtaccgtttg gtatctcaaa ctctcctgct gtattctgcc gatacctaac      2760
     agctacattg agggatctca tacaaagtca atctatagta gtatacatgg acgacataat      2820
     cgtgccaagt aaggacgaaa acgagggtct gctggcgttg gaaaaagttt tgaaagtagc      2880
     ttcaaaagct ggattacgca tcaaatggga aaaagcgcaa attttgaaga gcaagatcga      2940
     ttttctaggt tacactattg agaacggaac catagcacca actaacgaga aaataaaagc      3000
     ggtcgtcaat tttccaattc ctcaaagcag acaagctttg cagcgttact tgggtctgac      3060
     gtcttacatg cgccgattta taaaggatta tgccttagca gcaaaaccat tgagcgactt      3120
     gctgcgagag aaaaatagta gaaaaaacga caggaattta acgttgactg aggaaggctt      3180
     agtttccttc aactctctga agcaactgct agtatcagca ccagtactca aactgttcga      3240
     tccgctagca gaaaccgaag tgcatacaga tgcaagcaag tatggctttg gcggcgtttt      3300
     aatgcaaagg gactcagagg atcaacagtt tcacccaata gaattcatga gtcgaaagac      3360
     gaatgcttct gaggaaaagt acagttccta cgagcttgag gttttagcga ttgtaaacgc      3420
     gctgaaaaag tggagagtct acctgctcgg aaagcgattt acagtgatca ccgactgcaa      3480
     cgcttttgca atgacgatta aaaaagacga cctgccaccg cgagttgcaa gatgggccat      3540
     gtcattgcaa gaattcgagt tcaaagtgga gcacagagct ggaaccaaaa tgaggcacgt      3600
     ggatgcatta agccgattgt catgtttttt aatcacagac tccacaaagt cacgattgtt      3660
     aaaggcacaa aacaacgaca actggattag agctgttaaa tccgtattga gcagcaatga      3720
     cgtatatgaa gacttctttt taaagaataa tattctttac aaagacacag taaacgaatt      3780
     actggttgtt cctgactcaa tggaagagga aatcataagc attgcacata aggagggaca      3840
     cttcggtatc aaaaagactc gtgatatttt agaaaagagt tattatatcc ctggaatcca      3900
     gccaaaagtc gaaagagtag tcaaaggatg cgtcgaatgt ctgatcattg aatccaagcg      3960
     aggaaaaaaa gaggggttgc tcaatcccat tgacaaggct caagaacctc ttggaacgta      4020
     tcatatcgac cacgttggac ctttaactga tacaaagaag aaatataatc atattttggc      4080
     ggtcgtcgat ggattttcca aatttgtttg gctttatcca acaaaatcga cgggatcaga      4140
     agaagttttg gaaaagcttg aaaagcaagc agcagtcttc ggcaaccctc gccgaattgt      4200
     tactgacaag ggaactgcat tcacttctgg actgtttaaa gagtactgca gccgcgaagg      4260
     aattcaacta cttcacatca ccaccggcat gcctagaggt aacggtcaag tggaaagaat      4320
     ccacaaaatt gtcataccca tgttgagcaa gatgtgccaa gaaaatcctg ccaattggta      4380
     tcgccacgta gacagagttc aacagataat aaacagcagt ccacctcgaa ctaccaagta      4440
     tagtcctttt aaaattttga ctggactcga tatgcggaaa aaagacgatg atttgagaaa      4500
     actatttgaa gacttaggta tagaagagtt aaatgacgag cgagaagaga tacgtgaaaa      4560
     agctcaggaa aacatagaaa aagtgcagca agagaacaga aagaacttta atgagaaaag      4620
     aaaggttgaa actgattatg ctatagggga attagtagca attaagagga cacagtacgg      4680
     cactggtatg aaacttcgcc ctaaattttt tggcccgtac aaaattaccc aaaaacttaa      4740
     tcacggacgt tatgaggtac agaaagaagg caaccaggag gggccaaaac atactacaac      4800
     agccgcagaa tatatgaaaa acaagaaaga aagcaaactt cggcaagccg aagttcatat      4860
     acccttgcag ctatcgcaag aattaaatat ttttgaaaac attaaaatta tgatttactt      4920
     gcgtatatgt ttaaaaacat tgaagctatg acgatttgca gcttaattat ttgattgttc      4980
     ttttatatat ttttaaaggg ttcattcatg aagatgcagg atggtcgat                  5029
//
ID   Gypsy-2_DEl-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DEl_;
KW   Gypsy-2_DEl-I; Gypsy-2_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-349
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 513-513 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 349 BP; 105 A; 68 C; 66 G; 110 T; 0 other;
     tgtgggatag ggatacttag tagatttagt tgccctctat tcgtagttgg tatggggaca        60
     cactgttttg aatttcacaa taaatgcaat tgatgtcatc agccagattc gcaagccgca       120
     ttccatccct ttttatcagg ttgatctatc gccatcactc tcttccctaa aggcccatac       180
     caagaaattg cgcaataagt cagtcggttg cgaagatttg tcgaaggaag gtcatggtct       240
     ccatagagtg cgaaagtcgt gaaacttaat ttgttcagtt ttaattaaat aaactcttgt       300
     aaactttacc cggaataaat aaataataac taatttgtaa taccctaca                   349
//
ID   Gypsy-2_Deu-I repbase;    DNA;    INV; 3605 BP.
XX
AC   AFPQ01003955;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_Deu_;
KW   Gypsy-2_Deu-LTR; Gypsy-2_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-3605
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01003955; Positions    6409    2805.
XX
CC   Positions [2556-3017] - Integrase core
CC   'GTATG' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1698..3431
FT                 /product="Gypsy-2_Deu-I_1p"
FT                 /translation="MPYDPSLPLLLATDASSTGIGAVLSHRLTNGNERPIA
FT                 YASRTLSQAELKYSPIDKEALAIVWATQRFFKYLYARHWTLITDNKPLAQI
FT                 LHPGKSLPTLCISRMANYADFMSNFDFDSVTKKSKENSNADYLSRLPIKAG
FT                 VIKEVEDSSSLDEFDNFMIRQIKQLPVTAKGISQETRKDQHLGKILQLLEN
FT                 GQCLAKNGYKSPECIYGLSYGCLTFEHRIVIPTKLRQTILDELHRAHLGVV
FT                 KMKGIARSFVYWPGIDKDIENTGKACESCAKNAKLPPKCSDHYWEYPKTPW
FT                 ERIHIDYAGPIHGMMLLIITDAYSKWLEVKVTKTITAGATIAILDELFATY
FT                 GVPLMLVTDNGTNFTSKEFKNYLTSAGIRYHKLTVPYHPATNGQAERNVQT
FT                 VKQALKAMRTSSDTMRRDLNEFLQQYRNAPHCTTGEPPAKLFLGRKLRTRL
FT                 DLIRPENVTEKVSAKRVMNFNPSYRQFHSHDEVYFYPETLEWTNGCKEKLQ
FT                 SVSEIFIMKYYTMENSSKDISTKCEVASHKVQKDSSARGRANYWNTLPKTK
FT                 TQFRDLQVIQSTEILRVPPMKKIMMTFSALQ"
XX
SQ   Sequence 3605 BP; 1278 A; 783 C; 727 G; 817 T; 0 other;
     gtggtgtcag aagtcaaaag gaatggcttc taccaattca gagagggcta catcgacttc        60
     aaataatgat ctaagcggga tcattgagtc gctggctgat gcaattcgca tagcagtggc       120
     acaaggtagc caaaatgcag ggattccagg aactgcaaag acgccgcagt ttgcaatgcc       180
     aagctacaag agcggggaag attctacagt taaagattac ttcagtcgat tcgagtgggc       240
     actacaactc agcaaggtgc cagaggagga gcaccacaac tacgcgcgtg tgcatatggg       300
     ctcagaattg aatacagcct tacgtatact gatcagtcca aagtgtcccg aagaattaca       360
     gtacagggag atcaaagaag tgctaattaa tcactttgat ggcaaacgaa acatgtatgc       420
     agaaagtttc aaatttcgtc aacttcgaca agagccagag gaaccactgg caacgttcgt       480
     acttcgctta aaacaagcaa tcgtttcgag caattaaacc ttcaatgcgt cttcagaaaa       540
     ccgaccgcaa attctccagc tatacagggc ataaattaca tgcataggac gagcgcccct       600
     taacgtaaca tatggaaaca ccacacggaa acttaatttg tacgtggtgg aggggaatct       660
     ggatacactg tgtggacgcg agtggatcac acaatttgca aaggaaatca acttcgagaa       720
     attattcgat gaagatagaa ctgaggacgc cattgatcta gatatgttta catccaacgg       780
     cagcacgatc aaggcaatta aagtacaagc aactggacta ccagaagaca aaaaaggtca       840
     gcttcaacaa attctcacta aatacaattt ggttttaata ctacagcagg aacattcaaa       900
     gggccagaag ttaaggtaca cttgaaacca ggggcaaaac cgatttttgc acgagcgaga       960
     gatgtaccat ttgcattgcg tgacgcctac gcaaaagaga tcgacaagaa aatttctgca      1020
     ggattctata agaaggtaga ttattccgaa tgggcttcaa caacacacgt agttaccaaa      1080
     aagaccgggg gcattcgaat aactggcaac tataaaccta cattaaaccc ccaaatgatt      1140
     atcgatgaac atcctatacc acgagctgaa gatttattca accagatgaa aggagctaca      1200
     atattcgcac acttggatat tactgatgca tattcacatt tacgaattga cgacgatgga      1260
     aacagtatta caggacatcc caaatgtact aattttttcg atgacataat gatatacgcc      1320
     ggaaatatgg aagaattgcc aaaaacgtta gagaagactt tggaaaagct gcagaatttc      1380
     ggattaaaac taaataaatc aaaatgtata tttgcggcat tatctataga atttctgggc      1440
     cacaagatcg acgcacaagg aatacacaaa tcaaccaaac acattgaggc cataatacat      1500
     gcacccagac cagcaacaat agagcagtta cagttgtttt tgggaaaagc aacatactat      1560
     tcgaatttca ttccaaactt atcgacacta gaaagaccgc ttcgcaacgt tttgaagaca      1620
     ggaaaattct actggtctca ggaaatagaa tctgatacaa acaaattaaa caaattctga      1680
     tatccccaca ggtactgatg ccatatgatc cgtctctacc tctactacta gcaacagatg      1740
     caagcagcac aggaataggc gcagtcctat ctcatcgact aaccaacggc aatgaacgac      1800
     caattgcata tgcgagccgc acgttaagcc aagcagaact caaatactca ccaatcgaca      1860
     aagaagcact tgccatcgta tgggcgaccc aaagattctt caaatattta tacgctaggc      1920
     actggacatt aataacggac aataaacccc tcgcacaaat tttgcaccca ggtaaatcac      1980
     ttccaacatt gtgcatctct cgaatggcta attatgcaga cttcatgagt aattttgatt      2040
     ttgattcagt aacgaaaaaa tctaaagaaa acagtaatgc agactacctt tctcgactac      2100
     caatcaaagc gggcgttata aaggaagtgg aagacagttc ttcgcttgat gaattcgaca      2160
     atttcatgat acgacaaatt aagcaacttc cagtgacagc caagggaata tcgcaagaaa      2220
     caaggaagga ccaacactta ggaaagattc tgcaactact cgagaatggt cagtgtttgg      2280
     ccaagaatgg atataaaagc ccagaatgta tatacggcct ttcttatggc tgccttacgt      2340
     ttgaacaccg aattgttatt cccacgaaat tacgacaaac aattcttgat gagttacaca      2400
     gagcacacct aggtgtagta aaaatgaaag gaatcgctcg atcctttgtg tattggcccg      2460
     gaatagataa agacatcgaa aatacaggaa aagcatgcga gtcctgtgcc aaaaatgcta      2520
     aactaccgcc gaaatgctcc gaccactact gggaataccc taaaacccca tgggagcgca      2580
     ttcatataga ctacgcgggg ccaattcatg gtatgatgtt attaattata actgatgcct      2640
     actcaaaatg gttagaggtg aaggtaacga aaacaattac ggcaggtgca acgatcgcca      2700
     tcttagacga attatttgca acttacggag tcccactgat gctggttacg gataatggaa      2760
     caaacttcac gtcaaaagaa tttaaaaact accttacatc tgcgggaatc agatatcaca      2820
     aattaacggt gccatatcat cctgccacaa acgggcaagc cgaacgaaat gtgcaaacag      2880
     taaaacaggc attaaaagca atgagaacat cttcggacac aatgagaaga gacctgaacg      2940
     aattcttaca acaataccga aatgctccac actgcactac cggagagcct ccggcaaaat      3000
     tgtttttggg cagaaaattg cgtacccgac ttgatttaat ccgtccagaa aatgtaacag      3060
     agaaagtttc cgcaaaacga gtcatgaact tcaacccttc atatagacag ttccattcgc      3120
     acgatgaagt ttacttttat ccggaaaccc tcgaatggac aaatgggtgc aaggaaaaat      3180
     tacaaagcgt ctcggagatc ttcattatga aatattatac aatggaaaac tcttcaaaag      3240
     acatatcaac caaatgcgag gttgcatctc acaaggtgca aaaggattca tccgcgagag      3300
     ggagagcaaa ttactggaat actcttccga agacaaagac gcagtttcgg gatcttcaag      3360
     tgatacagtc caccgagata ttgagagtac caccaatgaa gaagataatg atgacatttt      3420
     cagcactcca ataacttcgc catcactgga tcatagggat gcactggagc aaactcaaca      3480
     agcaccacaa atggattcgt ctacaccaca ggtgcaggtg gacacaaaac caaccctacg      3540
     acgatcatcc cgcatacgac aaccaagaat tatattttca tcatcaccct aagaggggga      3600
     agtat                                                                  3605
//
ID   Gypsy-2_Deu-LTR repbase;    DNA;    INV; 162 BP.
XX
AC   AFPQ01003955;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_Deu_;
KW   Gypsy-2_Deu-I; Gypsy-2_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-162
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01003955; Positions    2804    2643.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 162 BP; 61 A; 19 C; 19 G; 63 T; 0 other;
     tgttatgtat taagttaaag gaatcacatt aatgaataat cgatagtttt tagtttgcga        60
     tagttatcat tttgaaaata catccctgtt tattacttct tcttctttca ccataaaaaa       120
     atgtaattga gtttcaataa gaataaaata tacgatataa ca                          162
//
ID   Gypsy-2_DFi-I repbase;    DNA;    INV; 3343 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DFi_;
KW   Gypsy-2_DFi-LTR; Gypsy-2_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3343
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 891-891 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1747-2289] - Reverse transcriptase
CC   'TATATA' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..3342
FT                 /product="Gypsy-2_DFi-I_1p"
FT                 /translation="MMRSAKKNKNQNQTKTRSGQQYGQKSPQNAEIANLDL
FT                 NKTFVSSQEIDEQNQKEEGNEREVNEEAEICNELKFTAIREEMCSNELSEV
FT                 LKLLATKIGQSESNRNIVPIESFAKVVPEFDGVSIPIRQWLKCFDENADAY
FT                 ELTNKQKYVNARIKMKGTAKLFLESSTVSDYDNLTAVLLDEFDKTLTSAEI
FT                 HKQLRDRKKNDNENFHEYVLHMRKIAALGVVEDESVIRYIADGLKLRDDLK
FT                 YPLYSASTFKELRSRFETIEAMTKSTMGRKQAMQQSDFRKPGTQGRRSEQQ
FT                 PSQNQRHCFNCGSPEHMRAECKEETKCFKCNGSGHTSRNCPGKGPSISVIS
FT                 ESREKMLMINNKSVSCLVDTGADVSLMRMRTYKNNFAENPLQKSFAKLYGL
FT                 GNIATSVLGALDAKVEVDGISSQHRFLIVPDNKVNVNVIIGFDFLKKFTVV
FT                 LENGKYAFTGGDDVVEVETDRNVYNVVSRDTELDVPPKYKPAVEHLIDNYK
FT                 PSKVEKSCPVKMTIIPNCNNIAFREHPSRSSAAEREIIRKQVEEWLQQGII
FT                 RESSSDVASKVVLAKKKDKSYRLCIDYRVLNTMVLKDRFPVPLIDEVLDKM
FT                 QGAKYFSVFDLKNGFFHVEIDEPSRKYTAFVTKEGLFEFNRAPFGYCNSPA
FT                 VFVRYVTYIFQQLINENIMEMYIDDIVVFGRTAQECLSNMERVLKQAQQYG
FT                 LDIKWSKCHFLKERINFLGYEVENGQIWPGKEKVKAVKHFPMPVNIRGVQA
FT                 FLGLTGYFRKFIKNYAFIAKPLTELLKKDAVFKIEGAQKQAVEQLRAALQE
FT                 EPVLKIWSQSAKTQLHVDASKHGFGGTLLQQHDGKWHPVFYWSKKTTPQEE
FT                 KLTSYVLEVKAAYLATKRLRHYLLGVQFDLVTDCAAFKQTISKKDIPREVT
FT                 PWLMYLQDFTFNAEHRAGTRMQHVDSLSRFPVMIVTSEVHTQIKKAQQNDE
FT                 HLMAVRELLKQNPYADYIVKNSIIYKQVRGQDLLAVPKCMEKEIIINSHNF
FT                 GHMGTQKTMHAIQQDFYIPHLEKKVKQVISNCIECITHNQKLGKQDDFLHV
FT                 DEEAEASGTDVLQDGR"
XX
SQ   Sequence 3343 BP; 1136 A; 619 C; 809 G; 777 T; 2 other;
     tgggggctca accgtgccaa aagttgaaag agcaaaaatc atagtggtgt gcgtaagcgt        60
     cgagcgaaat cggaagaaaa ttgaaataaa accagttgca gttggattaa taaagtcgca       120
     ataatgatgc gttcagcgaa gaagaacaaa aatcagaatc aaacgaaaac ccgaagtgga       180
     cagcagtatg ggcaaaaaag tccgcaaaac gccgaaatcg cgaatttgga tttgaacaaa       240
     acttttgtct cgtcgcagga aatagatgag caaaaccaaa aagaagaggg aaacgagagg       300
     gaggtgaatg aagaggccga aatatgcaac gagttgaaat tcacagctat acgcgaagag       360
     atgtgcagca acgagttaag cgaggtgctc aaactgcttg caaccaaaat tggacaaagc       420
     gaatccaata ggaatattgt tccgatcgag agtttcgcta aagtggtgcc cgagttcgat       480
     ggagtttcaa tcccaataag acagtggctg aaatgttttg atgaaaacgc cgatgcctac       540
     gagttgacga acaagcagaa atatgtgaac gctcggataa aaatgaaggg aacagctaag       600
     ttatttttgg agtcctccac cgtttcagat tatgataact taactgctgt acttttggac       660
     gaatttgaca aaacgctgac cagcgctgag atacataagc agctaagaga tcgtaagaaa       720
     aatgataacg aaaattttca cgaatacgta ttgcatatgc gtaagatagc agctcttgga       780
     gtagttgaag atgagtcggt gattcgttac atagcagatg gattaaagct tcgtgatgat       840
     cttaaatacc ctctttacag tgcctcaact ttcaaggagc tacgtagtcg gtttgaaacg       900
     atcgaagcga tgaccaaatc aacaatgggg cgaaagcaag caatgcagca gagtgacttc       960
     agaaagccag gaacacaagg aaggcgatcc gagcagcagc catctcagaa tcaaaggcat      1020
     tgcttcaact gcggctcacc cgagcatatg agagccgaat gcaaggagga aactaaatgt      1080
     tttaagtgta atggcagtgg acatacgtcg cggaattgtc caggaaaggg accgagtatc      1140
     agtgtgatca gcgaatcaag ggagaaaatg ctcatgatca acaacaaaag tgtgtcctgt      1200
     ttagttgaca ctggagcaga cgtatctctt atgcgtatga ggacatacaa aaacaatttt      1260
     gctgaaaacc cactacaaaa aagtttcgct aaattgtacg gactcggaaa cattgcgacw      1320
     tcagtgctgg gtgcgttgga tgcgaaggtg gaggtggatg gaatttctag tcagcacagg      1380
     tttctcatag tgcctgataa caaagtgaat gtcaacgtta ttattggctt tgattttctg      1440
     aagaagttta ctgttgtgct ggagaatgga aaatacgcat ttacaggagg agatgacgtt      1500
     gtcgaagtcg agactgaccg taatgtttac aacgtggtaa gtcgtgatac agagttagac      1560
     gtacctccaa aatacaagcc ggcagtcgag catttgattg ataactacaa gccatcgaaa      1620
     gtggaaaaat catgtcctgt taaaatgaca ataattccga attgtaacaa cattgcattc      1680
     agggagcatc caagccgatc atcagctgca gagcgagaaa ttattcgcaa acaggtcgaa      1740
     gaatggttgc agcagggcat tatacgtgaa tcaagctcgg acgtggcaag taaagttgtg      1800
     ctagcaaaga aaaaggataa gtcatatcgg ctgtgcatag actaccgtgt tttgaataca      1860
     atggtactaa aggaccgatt cccagttcca ctcatagacg aagtgcttga caagatgcaa      1920
     ggtgcgaagt atttttcagt cttcgacctc aagaacggtt ttttccacgt cgaaatagat      1980
     gaacccagcc gcaaatatac agcattcgtc acaaaggaag gacttttcga atttaataga      2040
     gctccattcg gttattgtaa ttcgccagct gtattcgtaa ggtatgtcac atatattttt      2100
     caacagctga tcaatgaaaa tattatggaa atgtacatag acgacattgt tgtttttggg      2160
     cgaacagcgc aggaatgtct aagcaacatg gagcgagtcc tgaaacaagc acagcagtac      2220
     ggccttgaca taaaatggtc aaaatgccac tttttgaagg agcgtatcaa ttttctaggc      2280
     tacgaggtag agaatgggca gatatggccc ggtaaagaga aagttaaagc cgttaaacat      2340
     ttcccgatgc cggtaaatat cagaggcgta caagcatttc ttgggttaac tggatacttc      2400
     cgcaaattta ttaaaaatta cgcttttatt gctaaaccct taacagagct gttgaaaaag      2460
     gatgccgttt tcaagataga aggagcacag aagcaagcag tagaacaact cagagcagca      2520
     ttacaagaag aaccagtcct gaagatttgg agccagagcg ctaaaacaca attgcatgtg      2580
     gatgcatcga aacatggatt cggaggaaca ttgctgcagc agcatgatgg caagtggcac      2640
     cccgttttct actggagtaa gaaaacaacg ccacaagagg aaaagttgac cagttacgta      2700
     cttgaggtaa aagcagcgta cttagcaacg aagagacttc gacattacct gttgggtgta      2760
     cagttcgact tggtaacaga ttgtgcggca tttaagcaga cgatttccaa aaaagatatc      2820
     cctcgagaag ttacgccgtg gttgatgtac ctacaagact ttaccttcaa tgcagagcat      2880
     cgcgcaggaa ccagaatgca acatgtcgat agtctgagtc gttttcctgt gatgatcgta      2940
     acatcagaag ttcacacaca gatcaaaaag gcgcagcaga atgatgaaca cctaatggct      3000
     gtcagggaat tattaaagca gaatccttat gcagattata ttgtcaaaaa cagtataatt      3060
     tacaagcaag taagaggaca agatcttttg gcggtaccaa aatgcatgga gaaggagata      3120
     ataataaact cacacaactt tggccacatg gggacgcaaa agacgatgca tgcaatccag      3180
     caggattttt acatacckca cttggagaag aaagtaaagc aggtaatttc aaactgtatc      3240
     gaatgcatca cacataacca gaagctgggc aagcaggatg attttttaca cgtcgacgag      3300
     gaagctgaag catctgggac agatgttttg caggatggcc gaa                        3343
//
ID   Gypsy-2_DFi-LTR repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DFi_;
KW   Gypsy-2_DFi-I; Gypsy-2_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-296
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 892-892 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 296 BP; 101 A; 56 C; 52 G; 87 T; 0 other;
     tgtgaagtaa tggcagtagt agaagttggc agtccttatt catatcgata tgagacttct        60
     ttcaacagtc ttcagcgata gcccatcact cagaaagtag aagcgagtct tggatcagcg       120
     aaaaagcaga gaacgtgcaa aaagtcggcc gtaaagttgt aaaagtagtc aagtcgcgcc       180
     aatcagttgc caaattgttg ttcaaccttt ttgaatcatt ataatcaaca tttttgtaaa       240
     catttatcca catatctatc caaataaact tatgataata atcccattat cttaca           296
//
ID   Gypsy-2_DGri-I repbase;    DNA;    INV; 6776 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DGri_;
KW   Gypsy-2_DGri-LTR; Gypsy-2_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6776
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1293-1293 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4657-5133] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           722..2086
FT                 /product="Gypsy-2_DGri-I_2p"
FT                 /translation="MAVQRSNEDIAAGINADIVLCNICRDPVLISTEIAET
FT                 PCKHKFHRACLVAWLRTNETCPACRQTCTLSQLNDIESQSSEQHLQVPRTV
FT                 RGGHRTGATPRTRPNTRSNNQRNNSGAQAYRPNSNFNVRNRRDSSNASLDP
FT                 PILSEQRIQQLISSSLDTFRASMVVAVTDEISLAIRNLNISNNQQEARIEP
FT                 GVEQNNSMNSNNNNRYQGIRTVADNRSADSIERPDKVSRIISSWHVQFSGS
FT                 FNEISVEDFIYRINRLTDQCLNGNWNLLYQFANILFCGPALQFYWRFQRTN
FT                 SRANWFQLCDALRERYRDQRSDEEIKDSLRSRKQRNGESFDQFLDAILSIA
FT                 DALREPMTDRELVANIKRNLKPELRLELLHVATPDIATLRTECHKHEQFCL
FT                 SMSSRPVSRPTNTRRFLNEVVHEEESIDTSPTEATEINAIQSVDRIRCWNC
FT                 DEKVIDIKIV"
FT   CDS           2725..5499
FT                 /product="Gypsy-2_DGri-I_1p"
FT                 /translation="MIVPSITQDVICGMDFWKSFGINISNTTVVSELDCSD
FT                 QTSDNMCLSVTDRNRLKAVVDFFPSSERDGLGKTSLIEHSIDTGDAKPIKQ
FT                 RYYPLSPAKEQQMCTEIDRMIELGVLEEAPMSAWSSPAVLVLKPGKVRICL
FT                 DSRKLNSVTVKDAYPSPLIEGLLSRLPPVQCISKIDLKDAFWQICLDAKSK
FT                 EKTAISVPNRPLYQFTRMPFGLTNAPQTLCRLMDQVIPYAMKSHVLVYLDD
FT                 LLVLSSNFEEHLSHLAEVATQLRKAGLTINVNKSQFCLKKVEYLGYIVGEG
FT                 TLKINPNKIQAVSEFPTPKTKRQLKRFLGMTGWYQRFISQYSDVTFALTEL
FT                 LKGKSFEWNEDAQKALDELKRQLTSAPFLVHPNYAKPFVLQCDASINGVGA
FT                 VLAQCDESGVERPIAYMSKKLNKAQRNYSVTELECLAVVLAIKRFRMYIEG
FT                 HEFKVVTDHASLRWLMNQQDLNGRLARWAIKLQGFNFSIEHRKGSENIVAD
FT                 ALSRSYEDEIAAIDLEVIPEIDLSSDAFKSSEYVELKDHYVKANLPDFQVV
FT                 DEYIYHRTELAQNEIDRNTESWKLVVPMALRESVIKSAHDLPTSSHCGIAK
FT                 CLELIRRKFYWPRMVVDVRTYIRNCELCKTSKYPAQALKTQMGDQVISERP
FT                 FQRLYVDFIGPYPRTRKGNIGIFIVLDHFSKFTFLKPVRKFNSKIIISYLK
FT                 EDIFDCFGVPEIIVSDNGTQFKSHEFATFLSKHGVKHICTAVYSPQSNAAE
FT                 RVNRSINAALRSYVRHDQRDWDLYLSSINCSLRNHLHQTIGQSPYFVVFGQ
FT                 YMLTHGKDYLLLKNLNLLSEGSIKLNRADEFAKLRSDIQKHMNKAYDKNQR
FT                 TYNLRARPRTFAVGQIVVKRNFVLSNASANFNAKLAPIGTQARIRKRLGNS
FT                 LYILEDLNGRELGSFHAKDIW"
XX
SQ   Sequence 6776 BP; 2156 A; 1325 C; 1348 G; 1947 T; 0 other;
     tcgacgtgtt cgttacataa ttaaatggcg cccaacgtgg ggccacgaat aacgtagtac        60
     ggctacttct ccaactacat atagccttct caaaaccccc cacaaaccag ataacctctc       120
     tgaattttcc tttccctaaa tcaaccatca tccaaaaata gttcagtgcg tattattaat       180
     tattaggaat tgcaggtaat ctgtcagttt tgcggtgcct gaccaataat caataaatac       240
     gaaagaaaat gtcttaagtt aaccactttt agctaataat attaatgatt ttgaattctg       300
     ctctccttcg gaattttagc attggcttca tgtcgatcta aaccaggcga tagaattcta       360
     aataaatacc ataatgattg ttaaaagaga atgagattgt ttttggtgga ttatttcgcc       420
     actttcctct tttccgaaag caattcttca attataagta gaatcagtta ttggtcgagg       480
     gaaatcacga ttgatatgtc tataattcaa attgcaacca ttttattgac ggataagtcc       540
     ccaaagtgat tcataaattc gatagtcgtt cattattttc atattgccta tcgtttgata       600
     gttaacaaaa tcatgaccat tttctaaatc tagtatcata aatttaaata caaaattata       660
     ttaagatttg ctgattaatg taaaatttaa atattcgtta gtaaacctat tacattgtat       720
     aatggcagtg cagcgaagta acgaagatat agcagctggc ataaatgctg atatagtgtt       780
     gtgtaacatt tgtagagacc cagttctgat tagtactgaa attgcggaga ccccttgcaa       840
     acacaaattc catcgagctt gtttggtagc ctggttacgt actaatgaaa catgtcctgc       900
     gtgtagacag acatgtacac tttcccagtt aaatgatatc gaaagtcagt catcagaaca       960
     gcaccttcaa gttcctcgaa cagttcgtgg tggccatcga actggtgcta ctcctaggac      1020
     tagacctaat accagatcca ataaccaacg aaataactct ggcgcacagg cttacaggcc      1080
     taatagtaat tttaacgtca ggaatagacg agactcatcc aatgcttcgc ttgaccctcc      1140
     catcctttct gaacagcgaa ttcagcaact tatttcaagc tcgttagata cctttcgagc      1200
     cagtatggtt gtagcagtga ctgacgagat cagtttagct atcagaaacc ttaatatatc      1260
     aaataaccag caggaagctc gaattgaacc aggagttgag caaaataatt caatgaattc      1320
     aaataataat aataggtatc aagggattcg aacagttgca gataatcgaa gcgctgattc      1380
     cattgaacga cccgacaaag tctcaagaat tatttcgagt tggcatgtac aattctctgg      1440
     atcctttaat gaaatttctg tggaagattt tatttaccgg atcaatcgct tgaccgacca      1500
     atgcctcaac ggaaattgga atttgcttta tcaatttgcc aatattttgt tctgtggccc      1560
     tgcattacag ttctactggc ggttccaaag aacaaatagt cgtgctaatt ggtttcaact      1620
     atgcgatgcc ttgcgtgagc ggtatagaga tcaacgctcg gacgaggaga taaaagattc      1680
     tttaagatct cgtaaacagc gaaacggaga aagctttgac caatttttgg atgctattct      1740
     gagtattgct gatgcactgc gagaaccaat gacggatcgg gagttagtgg ctaatattaa      1800
     aagaaacctt aagcctgaat tgaggctaga actacttcat gtggctacac ccgatatagc      1860
     aactcttcga actgaatgtc acaagcacga acaattctgt ttgagtatgt cctcaagacc      1920
     tgtgtctcgg ccaactaaca ccaggcgttt tctcaatgaa gtcgtgcacg aggaagaatc      1980
     gatagatact tcccctacag aggcaactga gataaatgca atacaatcag ttgataggat      2040
     aagatgttgg aattgtgatg agaaggtcat agatatcaag attgtataaa aaccagacgc      2100
     atattttgct atgggtgcgg tcgtcttgat acatacaaac cgacatgtcc taagtgcaat      2160
     cccgtatcgg aaaacttgca acaggatgtc caccgagcat aatcagtgga tatccaccta      2220
     cagtctcgga tcaaccatca aacaatggaa aatactcaac ttgtacccca caaattccta      2280
     acaataacac ggacttatct aagaatctaa gattcaaacc gttgcatgta aaattgaaag      2340
     aatattacca gcgtagagcg gaaatattct gtttgaaagt aagttcgctt cctaaaactc      2400
     gttcttcagt tagaatgaat gagttttgga gaaacaagcg atcgctaaag aacattactg      2460
     ttgtctctac cgtccgcaac tgtaatgatt cgcgcccata tataaatctt atgttattcg      2520
     gtcaaagcta tttagcatta ttggatagtg gtgctaataa aagcgtgatc ggaggacaat      2580
     tggccgcacg attgcttgca acagacctaa agtttgaaaa aattaaaagg caatgttcgc      2640
     accgcagatg gccagcgtca gacagtatta ggtactcttc gtattccgat agagtatgac      2700
     ttactgcaga aagaggttga atttatgatt gtaccttcaa tcacacaaga cgtcatctgt      2760
     ggcatggatt tttggaagtc attcggtatt aatatttcta atacgactgt agtaagcgaa      2820
     ttagactgca gcgatcaaac atctgataat atgtgtctta gtgttaccga caggaatcgc      2880
     ttaaaagccg tcgtagattt ctttccatcc tcggaaagag atgggctagg aaaaacctct      2940
     ttaatcgaac acagtattga taccggtgat gctaagccca tcaagcaaag atattatccg      3000
     ttgtccccgg ctaaagaaca acagatgtgt acagaaatcg acagaatgat tgagttagga      3060
     gttcttgaag aagcacctat gtctgcctgg tcttctccgg ctgttcttgt tctaaagcca      3120
     ggtaaagtaa gaatttgttt agattcaagg aagctaaact ccgttacagt taaagatgct      3180
     tatccttcac ctctaatcga aggactgtta agtcgtcttc cacctgttca gtgtatttcc      3240
     aaaattgacc tcaaagacgc tttttggcag atttgtctgg atgccaagtc gaaagaaaaa      3300
     acggcgatta gtgtcccaaa cagaccgttg tatcaattta ccaggatgcc attcggatta      3360
     acgaatgctc ctcaaacatt gtgcagactt atggatcaag ttatacctta tgccatgaag      3420
     tcccatgtac tagtttattt ggatgaccta ttagtgcttt cctccaactt tgaagagcac      3480
     ttgtctcacc tggccgaagt agcaacgcaa cttcgaaagg ctggtctcac aatcaacgtt      3540
     aataagagtc aattctgtct gaagaaagtg gaatatttag gatatattgt aggtgaaggc      3600
     acattgaaaa taaatccaaa taaaattcag gctgtttcgg aatttcccac acctaaaaca      3660
     aaacgccagc ttaagcgctt tttgggtatg accggctggt atcaaaggtt catctctcag      3720
     tattcggatg ttacattcgc cttaactgaa ttattgaaag gaaaatcttt cgagtggaat      3780
     gaggatgctc aaaaggcttt ggatgaatta aagagacaac taacatctgc accctttctt      3840
     gtccatccaa attacgcaaa acccttcgtg ctgcaatgcg acgcatctat aaatggagta      3900
     ggcgcagtac tagcacaatg tgatgagtct ggagtagaac gacccattgc atatatgtca      3960
     aagaagctta ataaagcaca acgcaattat tcagtgacgg aactggaatg tttagcagtg      4020
     gttttagcta taaaaagatt tcgtatgtac attgaaggtc acgaatttaa agtcgtaacc      4080
     gatcatgcaa gtttacgttg gctaatgaat caacaagact tgaatggtag acttgcaaga      4140
     tgggctataa agctacaagg ttttaacttt agtatagaac atcgcaaagg cagtgaaaat      4200
     attgtagccg atgcattgtc tagatcatat gaagatgaaa tagccgccat agaccttgaa      4260
     gttattccgg aaattgactt aagctcagac gcattcaagt ctagtgaata tgtcgaacta      4320
     aaggatcatt atgttaaagc caatttacct gatttccaag ttgtggatga atacatttac      4380
     caccgtacag aattggctca gaatgagata gatcgtaata ccgaatcttg gaagcttgtt      4440
     gttcccatgg cattgcgtga aagtgtgatc aaatccgcgc acgatctacc tacttcttct      4500
     cattgtggta tagccaagtg cttagagcta atacgtcgca agttttattg gccacgaatg      4560
     gttgttgacg ttcgcacgta tattcgaaac tgtgaattat gtaaaacttc gaaatatcca      4620
     gctcaagcac tgaaaacaca aatgggcgat caagtcataa gtgagaggcc tttccaaaga      4680
     ctgtacgtag attttattgg accttaccca cgtacgagaa aaggaaatat tggaattttt      4740
     attgtattag accacttttc caaatttaca ttcctaaaac ctgtaaggaa atttaactcc      4800
     aaaattataa tttcgtactt gaaggaggac attttcgatt gttttggtgt tcctgagata      4860
     attgtaagtg ataatggaac tcaatttaaa agccatgaat tcgctacatt tctctcaaag      4920
     catggtgtaa agcatatctg taccgctgtt tactcacctc aatcaaatgc tgcagaacga      4980
     gttaatcggt cgatcaacgc tgcgttaaga tcgtatgtac gacacgatca gagagattgg      5040
     gatttgtacc taagtagtat aaattgctcc ttaagaaacc accttcacca gactattgga      5100
     cagtcaccct atttcgtcgt gtttggacaa tatatgctca ctcacgggaa agattacttg      5160
     ttgcttaaaa atttgaattt actaagcgaa ggctcaatca agttgaatcg agctgacgag      5220
     tttgctaaat tacgttcaga tatccaaaag catatgaata aggcttacga taaaaatcag      5280
     agaacatata atttacgtgc gaggccacgt acatttgcag ttggacaaat agttgttaaa      5340
     cgaaactttg tattgagtaa tgcatccgct aattttaatg caaagctagc tcctattgga      5400
     acccaagctc gtataaggaa aaggttggga aactcgttat atattttaga ggacttgaat      5460
     ggcagagagt taggctcatt tcatgcgaaa gacatctggt aattcatatg aacacctttc      5520
     ttcagctttt atcttcgcct atcagactta gattaaacct gtgctgtagt ggtgtacata      5580
     ttcgcacagg taacgtctgg gacgggcttg taaacgatca gcatgcaaga aaatatgtaa      5640
     acagctgatc gccaacgatg cgatagctga acctttcaca gcacttatga actaattagc      5700
     aactctgaat tagagcatct gtgcgcagcg acggctacat tagttgcttc cgaaaagggc      5760
     tctcggcaac tgacacgtgt gcattgatta ttggctggaa aaaataactt ggcggcatcg      5820
     ccatagtacc gctcaagtat tgatattcat taaaagaatt caatgtaact gacggcgtaa      5880
     agtgcgtgcc caccaatatt ggctggaaag tttacgtctt cccgcaacgt agtggctgcc      5940
     ataagctaat tgtgcaaggg cggctacact atcactcaaa ttgtgatcgc cagggcctac      6000
     tgaaattgaa gcggtcaatt cgagcgccaa gcgtattgct gccattacca attaacttac      6060
     tgttaatctg ttggctgtgc aatacgggaa actgtctaca actctctgac gccgcatcga      6120
     taacgcacac gtgcagcagg cccacctgtt aagggcgagt cacccctgaa atctcggact      6180
     caaacatttg atatcttagt ggcgtaacct acaccaactt gcacacgtat tggaacacat      6240
     gtgagcggcg gtggaccaaa tcatcaaaaa acaaaagaat agcaactgtc gactacttag      6300
     aactctacaa tacacaacat tctaatagga ttttaaggtt atgttaataa tgagtgaatt      6360
     tatggaaaat tagttgtatt aattttggta aggcgttaac taaacttggt atggtacgta      6420
     tatgtgatat cagctgctat attgtctaat ccgtttcgaa gttcaaaaat agcaacgtca      6480
     tccgtcttca ggcctgtcga ctacgatgga ctactgccgc agcttttgtt tggtgctgta      6540
     agtacggcat aaccgcgctc agaaattgta agttattaac cataatgacc atatagcagt      6600
     tttgatatac ctagccatac gaagatacct ccttatttag ttgacacagg ttacatacat      6660
     atatatatac agtctttata gcataagtgt attatcgaat gaattgacca gaattgagaa      6720
     aaatgtaatg aattattagc aattaagaag tagtaattaa gcaacaactc caaacc          6776
//
ID   Gypsy-2_DGri-LTR repbase;    DNA;    INV; 421 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DGri_;
KW   Gypsy-2_DGri-I; Gypsy-2_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-421
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1294-1294 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 421 BP; 132 A; 82 C; 77 G; 129 T; 1 other;
     tgaaaaatgg aaattattaa ttaagtaaac tcgaaatatt aatgttaata attataataa        60
     tggaaccaat caccamtatg aagtagataa gaacataata atgaattaaa gtagactaat       120
     gggctcctga cataaaatgg ttttgcatcc ttaatagggt aaaggcacca actattagtc       180
     tttacaggtt gggcgggtaa agaagaagag catcaacatc tctgttcttc gatctagata       240
     tgtcactcgt gaattctttt agctattcta tctggttgtt tattccgttc ctttagcact       300
     ccctgtctac tatttttagt tatgtggcac ggcagcttac taggtagcaa aagcaccccc       360
     ccattttccc tgagcacagt cgaccctgta ggcagagtac gcctccagtt tgctgcacac       420
     a                                                                       421
//
ID   Gypsy-2_DHyd-I repbase;    DNA;    INV; 6325 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6325
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2407-2407 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           489..1805
FT                 /product="Gypsy-2_DHyd-I_1p"
FT                 /translation="MSDSEIQDLVKKFQSIDTGEKIKMSLSNEQLRAIVEG
FT                 AVTSALRTQKENFDQKLRDIEQRIGSVQVSTPEVETFREAEIRASVICNET
FT                 LDIMKSLPEFEGKNETYVSWRKAAHTAYKVYEKYDGSSKHYQALGILRNKI
FT                 KNAADMVLSSFDTPLNFRAIINRLDFTYADKRPIYLIEQELSTLRQGNLTL
FT                 LQYYDEVEKKLTLLINKTIMTYDANVASSLNEKYRADALRVFISGTRKTLS
FT                 DVLFSARPTDLPSALALAQEVESNHDRYMFATNFARSLEEKAQRTVQKQQG
FT                 RDRNLTQDPKYNQPGKSPYYKKQEFSPRREQVEPMDVDTSARFGQTTQYQQ
FT                 NTAPSKQTQWSTQQQNTKYESYNNQGQANKRPNNSSARLTGPKQQRVNYLE
FT                 ARDSEYEQDGNKYRTIAENEAEDIEDESDEYDQVHFLDLAPCYRS"
FT   CDS           1766..4867
FT                 /product="Gypsy-2_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="PGPFFRPGSLLPFIERSVAGRTIRLLIDTGASKNYVK
FT                 PLKELKHIKPVEKPFRVKSIHGYNDIDRKCTMHLFNTNTTFFLLPNLTKFD
FT                 GIIGLDLLNQNNVILDFKNKKLITNCTSETIKFLKCPAVNFTDVKEIETPQ
FT                 AITTNFQTMLKKRTGVFAEPNEALPYNTNIIATIRTENEDPIYSKLYPYPM
FT                 GVSEFVNAETQDLLKNGIIRPSRSPYNNPVWVVDKKGTDEQGRKKKRLVID
FT                 FRKLNQKTIDDKYPIPNIASILSNLGTARYFTTLDLKSGFHQILLAEKDRE
FT                 KTAFSIGSGKYEFCRLPFGLKNAPSIFQRAIDDVLREQIGKSCYVYVDDVI
FT                 IFSENMENHVKHIAWVLDKLYEANMRVSPEKSHFFKESVEYLGFVVSSKGI
FT                 KTCPSKVEAIRNYELPTTLFNVRSFLGLASYYRCFIKDFASLAKPISDILK
FT                 GENGKVSAGQSKKIPVKFDESQLTAFEKLKEVLASENVMLLYPDYKKAFDL
FT                 TTDASSFGLGAVLSQGGKPITMISRTLKDRELSFATNERELLAIVWALKSL
FT                 RNYLYGVKNLNIFTDHQPLTFAVSDRNPNAKIRRWKAFIDEYNANIYYKPG
FT                 KENYVADALSRHNIHALEDDAQSDRATMHSEVSLTYTIETTDKPINCFQNQ
FT                 IIIEEDRVASDRTVIIFGKKIRHTIHFSDRNSLIERVYDVVKKDVVNAIHC
FT                 ELPVLAFIQHKLIETFPTTIFRYTKHMVNDIFDKNEQKEITVTEHNRAHRA
FT                 AQENVKQILQDYFFPKMTKLANEVVANCKICKTAKYNRHPQKQILGETPIP
FT                 SYVGEMLHIDVYSTDKKYFLTCIDKFSKFATVQPIASRTIIDIQSAILQLV
FT                 NFYRHIKTIYCDNEPSLKSETIKSLLNGQYDIQIVNAPPLHSTSNGQVERF
FT                 HSTLSDIARCLTAQRKITDTVETILQATIEYNNTVHSVTDKRPIDIIHSSS
FT                 PELKIEIRNKIQKAQQLQINRVNETRHDRQFQVGDTVLVKANRRLGNKLTP
FT                 LYNENKIDADLGTTVLIKGRVVHKDNLR"
FT   CDS           4866..6323
FT                 /product="Gypsy-2_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="GKQNIKPFLFLFIFRIWAIILFATTVAAKLTDYTNTD
FT                 YIPISDGYVTIWTDFQYLKHSTNLTLYSAIVEDTKKLRQNFPRSHMRQLLD
FT                 TDIQHIEALIATVNIHHRHARSINMLGTVLKVVAGTPDSDDLENLKFTQKE
FT                 LVESENRQVTINTKMQEQINKLTDTVNLITKTKQIDTEHLYETLLSRNRII
FT                 ISELETLMLSVTLAKVGIVNPSILDSSDLKNIVNEHPINITITDLMEVSQV
FT                 KVLLNNNFLHFIIRYPKPNIVCKKLTIYPVQHDGIVINFAEDYDIAVCDNH
FT                 VISIGNCSTALTTTFCKKLPYTTCAQQLHSGGTAHCSTRPSHLEPLTIIDD
FT                 GVIIINDRVAIVDEQMVKGTFLLTFDNEIKVNGTVYKNPKKYVRKSPRPAA
FT                 STLLNITDHQEIPSLPYLQKLSIKNIRDIAQIEEQLVKRPIISGLTVVIIL
FT                 LSCYASMKLYQRHQRSKRQLDLQAVINSLKNSEDVIHLSGG"
XX
SQ   Sequence 6325 BP; 2478 A; 1299 C; 1061 G; 1487 T; 0 other;
     ggcgcccaac gaaatcggaa aaaaaaaacc cgaactcaat taaacaaata ttcaaaaaat        60
     aatttgtgaa aaaaacccga actcagttaa acaaatattc aagaaataat ttgtgaaaaa       120
     aaaaaaaacc cgaactctat taagaaaatt tccaacaaat aatttgaaaa aaacccgaac       180
     tcaatcaaac aattattaaa aaaaaatttg tgaaaaaaaa aaacccgaac tcagttaaac       240
     aaatattcaa caaataattt gtgaaaaaaa acattataaa ttacaactaa tacgcaacaa       300
     aaaaagttca ccgagggatt catcaaacca tcagctctac gaaaataata taagaacatg       360
     taagtagggt gttcaaaaaa aaaaaaaaaa aagaataata ataaataaaa attgtaaaaa       420
     tacaattcca actgttcaac taaattttaa ttgtataaaa aacactacac atatcttatt       480
     tgcatgttat gagtgatagt gagatacaag atttagtaaa aaaatttcaa agtatagata       540
     caggtgaaaa aataaaaatg tctttatcta acgaacagtt aagagcgatt gtagaaggcg       600
     cagttacaag cgcattaaga acccaaaaag aaaactttga tcagaaatta cgcgacatag       660
     aacaacgtat tggttctgta caagttagca ctcctgaagt agaaacattt agagaggccg       720
     agatcagggc aagcgtcatt tgcaatgaaa cccttgacat aatgaaatcc cttccagaat       780
     ttgaaggaaa aaatgagact tatgtatcat ggaggaaagc tgcgcatacc gcatacaaag       840
     tatatgaaaa atatgatggt agctcgaaac attatcaagc tttaggaata ttaagaaaca       900
     aaattaaaaa cgccgccgat atggtactct cttcgtttga cactcctctg aattttaggg       960
     ccattataaa tcggttagat ttcacgtacg cagacaaaag accgatatac ctaattgaac      1020
     aagagctgtc aacactccgt caaggaaatc tgacactact acagtactat gacgaagtgg      1080
     agaagaaact gactttactc ataaataaga caatcatgac ctatgacgcc aacgttgcct      1140
     cttcgttaaa tgagaaatac agggcagacg ctctacgagt attcatctca ggtaccagga      1200
     aaactttaag tgatgtccta ttctcagcta gaccaactga ccttccgtct gcactggcat      1260
     tagcccaaga agtcgagtct aatcatgacc ggtatatgtt tgccacgaat tttgcacgta      1320
     gtttagaaga aaaggctcag agaacagtac aaaaacaaca aggcagagat aggaacctaa      1380
     ctcaagaccc aaaatacaac cagccaggga aaagcccata ttataagaaa caagaattct      1440
     caccacgacg agaacaagtt gaaccaatgg acgttgatac atccgctcgc ttcggacaga      1500
     cgacccaata ccagcaaaac acggctccct caaagcaaac tcagtggtcg actcaacaac      1560
     aaaacacaaa atatgaaagt tacaataatc agggacaagc aaacaagaga ccaaataata      1620
     gtagtgcacg actcacagga ccgaagcagc aaagagttaa ctatttagaa gcaagagatt      1680
     cagaatatga acaggacggt aataaatatc ggaccatcgc agaaaatgag gcagaagaca      1740
     ttgaagacga atccgacgaa tatgaccagg tccatttttt agacctggct ccctgctacc      1800
     gttcatagaa agatcagtgg caggaaggac aataagatta cttatagata caggggcctc      1860
     taaaaactat gttaaaccat taaaagaatt aaaacatatt aagccagtag aaaaaccctt      1920
     tcgagtaaaa tcaattcatg gctataacga tattgacagg aagtgtacaa tgcatctttt      1980
     taacacaaat acaacatttt tcttactacc aaaccttacg aaatttgacg gtataattgg      2040
     acttgattta ctaaaccaaa acaacgttat attagatttc aaaaacaaga agttaataac      2100
     aaactgcact tccgagacta ttaaatttct aaaatgccca gccgtaaatt ttacggatgt      2160
     caaagaaata gaaacccctc aagccataac gacaaacttt caaacaatgc tcaagaaacg      2220
     aacaggagtc tttgcggaac caaatgaggc actcccgtat aataccaaca tcattgccac      2280
     cattagaaca gaaaatgagg atcccatata ttccaaacta tacccatacc caatgggcgt      2340
     atcggaattc gtaaacgcag aaactcaaga cctgttaaaa aacggtataa tacgtccatc      2400
     tcgttcaccg tacaataacc ccgtttgggt tgtagataaa aaaggtactg atgaacaggg      2460
     aaggaaaaag aagcgtttag tcatagactt cagaaaactt aaccaaaaaa caatagacga      2520
     caaatatcca atccccaata ttgcctctat cttatccaac ttaggaacag caaggtattt      2580
     tacaacccta gatctgaaat ccggatttca ccagatctta cttgctgaaa aggacagaga      2640
     aaagacagcc ttttctatag gaagtggaaa gtatgagttt tgcaggctcc cttttggctt      2700
     gaaaaatgca cccagtattt ttcaaagagc cattgacgat gtgctcagag agcaaatcgg      2760
     aaaatcttgt tatgtttacg tcgacgacgt aataattttt tctgaaaaca tggaaaacca      2820
     cgtcaaacat atcgcctggg tcttagataa gctatacgag gccaacatga gagtttcgcc      2880
     agaaaaatca cactttttca aagaaagcgt tgaatatcta ggtttcgtgg tctcaagtaa      2940
     aggtataaag acatgtccaa gtaaagttga agcgattcgt aactacgaat taccaacaac      3000
     tctgtttaac gtcagatcat tcctcggcct ggcaagctac tataggtgtt ttatcaagga      3060
     cttcgcatct ttggcaaaac ctataagcga catcttaaaa ggcgaaaacg gcaaagttag      3120
     cgcaggacaa tcaaagaaaa taccagtaaa attcgacgag agtcaactca cggcatttga      3180
     gaaactaaaa gaggttctcg catccgaaaa tgtaatgtta ctctaccccg actacaagaa      3240
     agcgtttgat ttaacaactg atgcttcgtc ctttggtcta ggggcagtct tatcccaagg      3300
     tggaaaacca atcaccatga tatcaaggac attgaaagat agggaactta gctttgcaac      3360
     aaatgaaaga gaattacttg ctatagtctg ggccttgaaa agcctccgaa actatctgta      3420
     cggagtaaaa aatttaaata tctttacgga ccaccaaccc ctgacgtttg cagtatctga      3480
     ccgtaatcca aacgcaaaaa tcaggcgttg gaaagctttt atagacgagt ataatgcaaa      3540
     tatctattac aagccaggga aggaaaacta cgttgctgat gcgctatcgc ggcataatat      3600
     tcatgccttg gaagacgacg cacagtcaga cagagctaca atgcatagcg aagtatcact      3660
     cacgtacact atagaaacaa cagacaaacc aatcaactgt ttccaaaacc aaattataat      3720
     tgaagaagat agagtagcct ctgatcgtac agtcattata ttcggtaaaa aaatccgaca      3780
     tacaattcac ttctcagaca gaaattcgtt aatcgaaaga gtttacgatg tagtcaaaaa      3840
     agacgtcgtt aatgcaatcc attgcgagtt accagtactg gcattcatac aacataaact      3900
     aatagaaact ttcccaacaa caatatttcg atatacaaaa catatggtaa atgacatttt      3960
     tgacaagaac gaacaaaaag aaataactgt aacagaacac aatcgagccc acagagcagc      4020
     tcaagaaaat gtaaaacaga ttttacaaga ctactttttt ccaaaaatga caaaactagc      4080
     taacgaagtg gttgcaaatt gcaaaatctg taaaacagct aagtacaacc gtcacccaca      4140
     aaaacaaata cttggagaaa ctcctatacc ttcctatgtg ggtgaaatgc tacacattga      4200
     cgtatactca actgataaaa aatacttcct tacatgcata gacaaatttt caaaattcgc      4260
     aaccgttcaa cccattgctt caaggacaat aatcgacata caatcggcaa ttttacaact      4320
     tgtaaatttt tatcgacata tcaagacgat ctattgcgat aatgaaccct ccttaaagtc      4380
     cgaaacaata aaatcactat taaacggcca gtatgacatt caaatcgtaa acgccccacc      4440
     actccatagt acttcaaatg gacaagtcga gagatttcat agcaccctca gcgacatcgc      4500
     aagatgccta acagctcaaa gaaaaattac agataccgtt gaaacgatac tccaagcaac      4560
     tattgaatac aacaacacag ttcactcggt aacagacaaa cgtccaatcg acataatcca      4620
     ctcatcctcc ccagaactta aaattgaaat aagaaataaa attcaaaaag cacagcagct      4680
     ccaaataaac agggtaaatg aaacaagaca cgatagacaa ttccaagtag gcgatacagt      4740
     tcttgtaaag gcaaacagac gtttagggaa caaattgaca ccactgtaca atgaaaacaa      4800
     aattgacgca gacttgggga caacggtctt aataaaaggg agggtggtcc acaaagacaa      4860
     cctaaggtaa acaaaacatt aaaccctttt tatttctttt tatctttagg atttgggcta      4920
     taattctctt cgccacaacg gtagcggcga aacttaccga ttatacgaac acagattaca      4980
     taccgatctc agacggatat gtaaccattt ggacggattt ccaatattta aaacattcaa      5040
     ctaatcttac tctatactca gcaatagtag aggacacgaa gaaattaaga caaaattttc      5100
     cacgatcaca tatgagacag ttattagaca cagatataca acatatagaa gcactaatag      5160
     ccacagtaaa tatccatcat agacatgcta ggagcattaa tatgctaggc accgttctta      5220
     aagtcgtagc tggcacgcca gactccgacg acttggaaaa tcttaaattt acacagaaag      5280
     aacttgtaga atcagaaaac aggcaagtaa ctataaacac aaaaatgcaa gaacaaataa      5340
     ataagctaac cgacacagta aacctcataa caaaaacaaa gcaaatagat acagaacatt      5400
     tgtatgagac actgctctca agaaacagaa taattatttc agaactagaa accttgatgc      5460
     tatcagtaac acttgcaaag gttggaattg taaacccctc catattagat tcttctgact      5520
     taaaaaatat tgttaatgaa caccctataa atatcactat tactgactta atggaagtat      5580
     ctcaagttaa agtcttgcta aataataact ttttacactt tattataaga taccctaagc      5640
     ctaacatagt atgtaaaaaa ttaacaatat accctgtcca acacgatggc attgtaatca      5700
     atttcgccga agactacgat atagctgttt gcgacaacca tgtaatatca ataggaaatt      5760
     gtagcacagc cctcacaaca acgttctgta agaaattacc ctatacaacg tgcgcgcaac      5820
     aactgcactc aggtggcact gcacattgct caactcgacc cagccatctt gaacctctaa      5880
     ccatcatcga cgatggcgtt atcatcatca acgacagagt ggctatagtt gacgagcaaa      5940
     tggtgaaagg gacattcctc cttacctttg acaacgagat aaaggtaaac ggcaccgtat      6000
     ataaaaatcc aaaaaaatac gtgaggaaat ccccgagacc agcggcatcc acgcttctaa      6060
     atataacgga tcatcaggaa ataccgagcc tgccgtacct acagaagcta agcataaaaa      6120
     acatccggga cattgctcaa atagaagaac aactggtaaa aagaccaata atatctggac      6180
     taaccgtggt catcattcta ctttcctgct acgcctcaat gaaactttat caaagacatc      6240
     agaggagcaa acgtcaactt gatcttcaag cggtaattaa cagtttgaag aactccgagg      6300
     acgtcattca cctaagtggg ggagg                                            6325
//
ID   Gypsy-2_DHyd-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-353
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2416-2416 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. It is often inserted in (TA)n
CC   microsatellites.
XX
SQ   Sequence 353 BP; 113 A; 77 C; 69 G; 94 T; 0 other;
     agttaacaca attgatcagc agaacgtaaa tattgaagct gaccatgcat tctcagcata        60
     aatgcttacg acaccagctg tctcaagcgg acattgcaca acagcggaag cgtccacgcg       120
     caacaatgtt gctgaccagc gacctagtac tgtatgcaat gccagcgttt tcagggctta       180
     gggctagctt ctattataag aacgattgtc aaatagagtt agttgatttt tggaaataaa       240
     gaacgtcggt catcgccacg gaattcacaa agtcttctca tttttcgaat aagtgttaac       300
     gccgatactc cgtacgcgct taacataatt tcgaaatctt aaaataaata act              353
//
ID   Gypsy-2_DKi-I repbase;    DNA;    INV; 5330 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.07, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DKi_;
KW   Gypsy-2_DKi-LTR; Gypsy-2_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5330
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1307-1307 (2012).
XX
RN   [2]
RP   1-5330
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-OCT-2019).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to the consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..5163
FT                 /product="Gypsy-2_DKi-I_1p"
FT                 /translation="MDLNISDITVVQLKRWLEVLKLSTKGTKNELFARLAK
FT                 VPVEVRGSAPENCTEMDQQILQPDVESREPDMESGEEMQIEVQTLENLRVE
FT                 IAKAQKKLENLNRQIGNEDTENEGGENAQLRNRDGNSSSENLEQSVRSFEN
FT                 TQRGDDRDGEIGGGRSGGSGDDRDGEIGGGRSGGSGDDRDGEIGGGRSGGS
FT                 GEDRDGDMGGGRGEGRDGDRNGDRREERDGDRSGVRGNSGEIGVQQNGGRF
FT                 ETSGLLSPGFNMAREILMDFTEKVSVRSWIAQYENISALYSLSDMQRRALL
FT                 ISKLKGNSLEWMHADAGRFAKPVNELLEQLKLAFGGIESKSALRRKFEARS
FT                 WSPNEQFATYFGEKCRLARDVAMDEDELLDGLVEGIPVLSLRTQAKLQCFD
FT                 GPERMLRAFADIRLPARGPAMAKLAAAKAVPASSETRCFNCNAKGHWKREC
FT                 TKPKRSPGSCYGCGAEDHRIAECPGNKKKAENNYVRLLKIFCSEYPNQPII
FT                 TECQIDSGSPVSFIKRSYVPANIKLEPQEESYFGINKSLLKSFGKILCFIF
FT                 KNEIKIWFKLIVVADESMGCNIVLGRDFMKVCGLEIDLEALKIVTVECVET
FT                 DVEKKAKELSNNCMELKNGGIKLGDIKLGTRLGDSYLDEQLGETLGEKNLG
FT                 TTLGEKSLGTTLEGKSLGTTLEGKSLGTTLIGNSLGTSLGKQSLGTIWNEN
FT                 FEGTVLNKDSLWNAYEEDVRIGXTNNFDEQLLGTKKLDEPMGVLEENFEKE
FT                 MMQINMLEHEKEERVYDIGEQVSYTDKIKLIGILESNYIHVPRPELPKSRC
FT                 EINIILENSKPFSCVPRRLSYSEKEALQKLLDEYLENGIIQSSRSEYASPI
FT                 VLVKKTSGELRLCIDFRRLNKIMVKDNYPIPLIDDLLDKLVGKSVFTKLDL
FT                 KNGYFHVFVNKDSVKYTSFTTPLGQFEFLRMPMGLKTAPQVFQRFVNDIFS
FT                 DMIRENKVIIYMDDILIASHDIKEHLEILVEVFRRLVENKLELRMDKCKFL
FT                 QDKVKYLGFLISKEGIKADEKGLEAIKNFPIPSKVQAVQSFLGLCSYFRRF
FT                 IKDFSILAKPLYDLLRKDKTFEFGKAELDCFTLLKDKLVAAPVLALYDHRD
FT                 DVELHCDASALGFGAVLLQRKEDKKLHPIFYFSKRSTPTEAKYHSFELETL
FT                 AIIYALRRFRIYLQGKPFKIVTDCNSLTLTLNKIDLNPRIARWALELQEFD
FT                 YELKHRAGRQMQHVDALSRCNNVMIIDANTFEDNLIICQARDTKLKEIREI
FT                 LENREHKWFEMRNGVIYRKDNNNRLLFYVPSRMEQHVLYKYHDELGHIGRD
FT                 KMLDAISKSYWFPSMKDKVCEHIQNCLKCIAFSPKVGKGDGLLHSIPKGNK
FT                 PFEVIHIDHYGPVDNSRSKKHILVVIDGFTKFVRLYTTKTTNTKEVLSALA
FT                 DYFRAYSRPRCIISDRGSCFTSTDFANFVEERNIKHIKIATGSPQANGQVE
FT                 RVNRSLGPMIAKLSEPERGLHWDVVVEKVEYSLNNTLHSSIKQFPSEILFG
FT                 IAQRGEDSDEFKEKLKEEEKVRETLEDDDEIIEENRRNLEQLRRKLEGEEE
FT                 IEENLEGEEKIIENLESEEEIIEENRKNLEQLRQKAEENQRKSQLRNETYY
FT                 NSKRKLNSEYREGDYVMVKNFDSTAGVSRKLIPKNKGPYIIGKVLRNDRFL
FT                 LKDIDGFQLSRNPYQGVWSANNIRHWMKDDSKSR"
XX
SQ   Sequence 5330 BP; 1896 A; 722 C; 1361 G; 1348 T; 3 other;
     aacttcagaa gtgggattgg gaaaaaaatt tcccccaacg ccagtgtgaw taaaatggat        60
     ttaaacatta gtgacataac agtggtacaa ttaaaacggt ggctggaggt gctgaaattg       120
     tcgacaaagg gaacgaagaa cgagctgttt gcgcggctag ccaaagttcc ggtagaagtt       180
     cgaggaagcg ctcccgaaaa ttgtaccgaa atggatcaac aaattttgca gccggacgtg       240
     gagtcccgtg agccggacat ggaaagcggc gaggagatgc agatcgaagt tcaaactctg       300
     gaaaatttgc gtgtcgaaat tgcaaaggca cagaaaaagc tggaaaattt aaatcgccag       360
     atcggcaacg aagacacgga gaatgaagga ggcgaaaatg cgcaactgag gaacagagac       420
     ggcaacagca gttccgagaa tttggagcag agcgttagaa gcttcgagaa cacacagcgt       480
     ggcgatgaca gagacggcga gataggcggc ggtagaagcg gcggcagcgg cgatgacaga       540
     gacggcgaga taggcggcgg tagaagcggc ggcagcggcg atgacagaga cggcgagata       600
     ggcggcggta gaagcggcgg cagcggcgaa gacagagacg gcgatatggg cggcggcaga       660
     ggtgaaggca gagatggaga tagaaacggc gacagacgcg aagagcgaga cggcgataga       720
     agcggcgtca gaggcaattc tggcgaaatt ggtgtgcagc aaaacggagg cagatttgaa       780
     actagcggct tgttgtcacc cggctttaac atggccaggg aaatcttaat ggatttcact       840
     gagaaagtgt ctgtgcggtc gtggattgcg caatacgaga atatatcagc gttatattct       900
     ctgtcagaca tgcagcgacg tgctttgctg atcagcaaat tgaagggaaa ttcgttggaa       960
     tggatgcatg ctgatgcagg gcggtttgcg aagcctgtta atgagttgct ggaacaactc      1020
     aagttggcgt ttggaggcat cgagtccaag tctgcactac gtcgcaagtt cgaagcgcgt      1080
     agttggtctc caaatgagca gtttgccaca tactttggcg agaaatgcag actggctcga      1140
     gatgtcgcaa tggacgagga cgaactactg gatgggctcg tggagggcat tccagtacta      1200
     agcttgcgta cacaggccaa gctccaatgt tttgatggcc cggagaggat gctgagggcg      1260
     tttgcagaca ttaggctccc agcaaggggg ccagccatgg cgaaattggc ggcagcgaag      1320
     gcggttccag cgagcagcga gactcgttgc ttcaattgca acgcgaaggg gcactggaag      1380
     agggagtgca ctaagccaaa gaggtcgcca ggttcgtgct acggatgcgg cgcagaggat      1440
     caccggattg ctgaatgccc cggaaataag aagaaggcag aaaacaatta tgtaagattg      1500
     ttgaaaattt tttgcagtga atatcctaac cagcctatta ttacagagtg ccaaatagat      1560
     tcgggaagcc cagtttcatt tattaagcgt tcatatgtac cagcgaatat taaattagaa      1620
     cctcaagaag agagttattt tggaataaac aaaagcttat tgaaaagttt tggaaaaata      1680
     ttatgcttta tatttaaaaa tgaaataaag atttggttta aattaattgt agtggctgat      1740
     gaatctatgg gctgtaatat tgtgctgggt agagatttta tgaaagtttg tggtctagaa      1800
     attgatttgg aagcattgaa aattgtaact gtagagtgtg ttgaaactga tgtcgagaag      1860
     aaagcgaaag agctttccaa caattgtatg gaactaaaaa atggaggaat aaaattaggc      1920
     gacataaagt taggtacaag attaggagat agttatttgg atgaacagtt aggtgaaacg      1980
     ttaggtgaaa agaatttagg tacaacttta ggtgaaaaga gtttaggtac aacattagag      2040
     ggaaagagtt taggtacaac attagaggga aagagtttag gtacaacatt aattggaaac      2100
     agtttaggta caagcttagg taaacaaagt ttaggtacaa tttggaatga gaattttgaa      2160
     ggtacagttt tgaataaaga ttcattgtgg aatgcatatg aggaagatgt aaggataggt      2220
     gkaacaaaca atttcgatga gcaactttta ggtacaaaga agttagatga accaatggga      2280
     gttttggagg aaaattttga aaaggaaatg atgcaaataa atatgttaga gcatgagaag      2340
     gaagaaaggg tttatgatat tggagaacag gttagttata cagacaaaat aaagttaatt      2400
     ggaatattag agtcgaatta tatacatgtt ccgagacctg aattgccgaa aagtagatgt      2460
     gaaattaata taattctgga gaactcaaaa ccatttagtt gtgtacctag gaggctgtcg      2520
     tatagtgaaa aggaagcgtt acagaaattg ttagatgaat acttagaaaa tgggattatt      2580
     cagagtagta ggtctgaata cgcttctcca atagtgttag tgaagaaaac gagtggcgag      2640
     cttagactat gcatcgattt cagaaggcta aacaaaatta tggtcaaaga taattatcca      2700
     attcctttaa ttgatgactt attggataaa ttggttggaa aatcggtatt tacaaaattg      2760
     gatttaaaga atgggtactt tcatgtgttc gtgaacaaag attcggtgaa gtatacatct      2820
     tttacaacgc cattaggaca gtttgagttt ttacgtatgc caatgggttt gaaaacagcg      2880
     cctcaggtat ttcaaagatt tgtgaatgat attttttctg atatgattcg agaaaataag      2940
     gttataatat acatggatga tattttaatt gcaagtcacg atatcaaaga acatttagaa      3000
     atattagtag aagtatttag gagattagtg gaaaataaat tagaacttag aatggataaa      3060
     tgcaagtttc tacaagataa ggtaaaatat ttaggtttct taatttcaaa ggaaggaata      3120
     aaagctgatg agaagggatt agaagcaata aaaaattttc caattccgag taaagtgcaa      3180
     gctgtacaaa gtttcttagg tttgtgttct tattttcgac gatttataaa ggacttttcg      3240
     atattggcaa aacctctata tgacttgttg agaaaagata agacgttcga gtttgggaaa      3300
     gcagagttgg attgttttac acttttgaag gataaattag tagcagcccc agtgctggct      3360
     ctatatgatc atagagatga tgttgagctt cattgcgatg cgagtgcgtt aggttttgga      3420
     gctgtactgc tgcagaggaa ggaagataag aaactacacc caatatttta cttttcgaag      3480
     agatccactc cgactgaggc gaaatatcat agctttgagt tagagacgtt agctattatt      3540
     tatgcactta gaaggtttag gatatattta cagggtaaac ctttcaaaat cgtmacagac      3600
     tgtaactcgt taacattaac tctgaataag atagacttaa acccaagaat tgcgagatgg      3660
     gctttagagc tacaggaatt tgattatgaa ttgaagcaca gagcaggtag gcaaatgcag      3720
     catgtcgatg cacttagcag atgtaataat gttatgataa tagacgcaaa tacttttgag      3780
     gataacttaa taatttgtca ggcaagagat acgaagctaa aagaaattag ggaaatttta      3840
     gagaacagag aacataaatg gtttgagatg aggaatgggg ttatatatag aaaggataat      3900
     aacaatagat tactgtttta tgtaccaagt agaatggagc aacatgtttt gtacaagtat      3960
     catgacgaat tagggcatat tggacgggat aagatgttag acgctattag taaaagttat      4020
     tggttcccga gcatgaaaga taaggtttgt gaacacattc aaaactgttt gaagtgtata      4080
     gcgttctctc ctaaagtagg taaaggagat ggattgctac acagtatacc gaaaggcaat      4140
     aagccatttg aggtgataca tattgatcat tatggcccag tagacaatag cagatcaaag      4200
     aagcatatat tagtggtgat agatggattc acgaaatttg ttaggcttta tactacgaaa      4260
     acaacaaaca caaaggaagt tttgagcgca ttagcagact attttcgggc gtatagcaga      4320
     cctaggtgta ttatatcaga tcgaggaagt tgcttcacat caacggattt cgcaaatttt      4380
     gttgaggaaa ggaatataaa acacataaaa attgctacgg gatcaccaca agccaatggt      4440
     caagtggagc gagtaaatag aagtttagga ccgatgattg cgaaactttc agaaccagaa      4500
     agaggactac actgggatgt agtagtagag aaggtagagt attcgttgaa taatacactg      4560
     catagcagca ttaagcagtt tcccagtgaa attttattcg gaatagccca gaggggagaa      4620
     gatagtgatg aatttaagga aaagttaaaa gaggaagaaa aagttagaga aacgttagag      4680
     gatgatgatg aaattattga ggaaaacagg agaaatttag aacaactaag aagaaaatta      4740
     gaaggcgaag aggaaattga agaaaattta gaaggtgaag aaaaaattat agaaaactta      4800
     gaaagtgaag aagaaatcat tgaggaaaat aggaaaaatt tagaacaact tagacagaaa      4860
     gcagaagaaa atcaaagaaa gtcgcagtta agaaacgaaa cctattacaa ttcgaaaaga      4920
     aagctgaatt cagaatacag agaaggtgac tatgtaatgg taaagaattt tgatagtacc      4980
     gcaggagtta gtaggaagtt aatacccaaa aacaaaggac cgtacattat tggaaaagtt      5040
     ttgagaaatg atagattttt gttaaaagac atcgatgggt ttcaattatc tcgaaatcca      5100
     tatcaaggag tttggagcgc taataatatt cggcattgga tgaaagatga tagtaaatct      5160
     agataaataa aattgaaaca gaatgttaaa gataaaaatc aagaaaattg taaactaaaa      5220
     atgagaaaag aaattgtaca aactatatga attgttaact aattctaaga ctaaatttaa      5280
     gatattttta gccgagatag tgggctatct caaggtcagg acggccgagt                 5330
//
ID   Gypsy-2_DKi-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.07, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DKi_;
KW   Gypsy-2_DKi-LTR; Gypsy-2_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-232
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1308-1308 (2012).
XX
RN   [2]
RP   1-232
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-OCT-2019).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2]: sequence updated.
XX
SQ   Sequence 232 BP; 68 A; 45 C; 58 G; 61 T; 0 other;
     tgtagcaggc caattgcatt aagtggggtc tgggcacacg attcgatgag ttacgctctc        60
     tgagagagca ggttacactc tctctctcag agagcgtcgc tactggtttt cggggttgaa       120
     gagagctgcc tacgtgcagc gagatcactg tcattcgagc gaacaaattg taaagacgtg       180
     tgtgtaaaag tacttaagaa taaataaata tttaataaaa catcctgtca ca               232
//
ID   Gypsy-2_DMo-I repbase;    DNA;    INV; 6817 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6817
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6817 BP; 2800 A; 1165 C; 1080 G; 1769 T; 3 other;
     tggcgaccgt gacatagtca cgaacatgtg ttgcgaaata gtaattatta actattaacg        60
     agctgtgcaa agaaatactt ttaaaatatg tgttgagagc ggaagtgtgc gaatatggaa       120
     gggacgtgtg ttgtacgtag cgtgaaaata taaatatata tacatatatt accaatttgt       180
     gaaaaacatt ccattggcca aatgcaaagt taaactaatt tttcaaccga aaacgtaaca       240
     caacgcaccc tgcaaacccg ctaccaacca aaaactcagc agcagcaata aatgacaaac       300
     accgaatcta cgtcgctgga ggaagctgct cctatcgagc aaagggacgc accgacactc       360
     caagaagcgt tagaggtgca tcccaccgat ggaccacgcc cactcacgat agctgagtac       420
     cgggcacgtc aagcgaagaa agaaaaaaag aagacaaaac gcggaggcag gattaggaaa       480
     cttcttcaac aaagatacct agaaagggat ctgttgaaga catacacaac agacgaggaa       540
     aaaacaaaag gactggagcg gatcgcaaag attaaccagc aacttcgcca aagagcgcag       600
     taacgcaatc gggctgcaga aatgcatatg ccttgtttgc ctttataata agacctacct       660
     caagttgaag cactttacag tgcaacttga aaaaactaat cactgatagg ctatatacta       720
     aaaccacacg attggacaat taattgttta aaaaaaaaaa atgtcagcca atcgtgtgta       780
     ataacacact aatattttcc atgtctgtgg cgctatgaaa atagcagcaa aaaaaaaact       840
     tttctctttt tttaaaaaaa aaaaaaaaat ttttttaata ataattttca ttaaatgaaa       900
     gcaaagtaaa ttaaccatta aaaaaaaaca aatattcaaa ataatttgaa gaaaaacaaa       960
     ttttttcttt tttttcacac cgattttatg aaacagtatg atagaaatat gaaatagtag      1020
     aaagcaagca taagttatac aaaatttttc tctaaaattt tttttttcat tattaattct      1080
     tctcttcaaa atgggttggt tcggaagcga cgatacccag tcaaaagaca atacggccaa      1140
     tgtcgtcaat aatgtcaaaa tagtggatca cacagatgat atccaatcat tgtggattct      1200
     acttctgatc ttaacaattg cttcagttgg tcaattctta ttgactctat atataaaaca      1260
     caataagatc ataaagaaga gatatataag tagagcaaac catttggatc agatatagac      1320
     aatgaatgtc aatcgaatag attatattta cgagaactat cctaattttc gaattaacgc      1380
     aattagaatt ttacacttgc ataaagaata catatccata taccagtttg aaaatgagta      1440
     tatagaagca tttaatgaag aatttagtcc attaatacac tgcaatacag cagaaaaggc      1500
     aatggtatta accacactgc catacgttag agttaaatta gttaaggaat acaatccaat      1560
     attaggaata gcaactatat ggttagttcg tttacaaaag tgaagctcca ttaaaggatg      1620
     gaatggaacg aaatagcgaa aaacatagac gcatttcgct ataaatttga aaggtcatac      1680
     aaatgcatca ataaagatgc agtaataaaa acgaacacat taatacacca tatagatata      1740
     attgtaggag aatacaataa tatagtaacg ctagtaaata agtacgagaa tagatttaca      1800
     gctgaacata gagagaaatg tttaagagtc ttaaaatctc taaacacaag attaatttct      1860
     gtcgccaata gacgacacat tcaaatatca gtaccaaaaa atctaaatca attggcagac      1920
     tttaatgcca gcccattaaa agatttagac gaatctatac agtcaggcga cgctgaatct      1980
     gatagtgaca tagaaacact agaagacaaa acaagtgaat tagtagatac aaaacctaat      2040
     ttactaacaa atacaaatat ggcaaatcag gtcgctttag acagggaata tgtgaagcaa      2100
     gtatctgctt ccgttcctga attcgatggt aaaaaatcat cattgaatag attcctaaca      2160
     gccttaasac tcgtagaaag aactaaaggc gatcaagaag atatagcggt cgaagttatc      2220
     aaatcaaaga taactggccc gatcctgtac aaggttcaaa atgaaaccac aataacagga      2280
     ataatcaaca tcctaaaagg caacgtaaaa ggagaatctc ccgacgtaat aaaagccaaa      2340
     ttgttgaaca ataaacaaaa aggaaaaaca gcatctcaat atacagttga aatggacaat      2400
     ttgcggaagc aattggaagc agcgtatatt gatgagggac ttgaccctga caatgcagag      2460
     aaattctcta caaaagaatc aatctctgcc atgaccaaaa actgcgagca tgacaagctt      2520
     cggataatac tagaagcagg taactttgtc actttcaatg atgtaatggg taaatatatc      2580
     cattgcagca ctgaaatgac tggaagttct agcacagtgc tattccagca cagtcgcaac      2640
     aatagaggag gtggttaccg ataccaaaga ggtagaggca atggccgcgg taaccacaac      2700
     tcttacaaca acaacaataa ctataacaac aatagaaaca ataatagagg tggaagaagt      2760
     tataaccgag gtaggaataa ttccaaccga ggcaactatt cagacagaaa tagtaaccat      2820
     aacagcaata ataatgtccg agttacccaa agcaattcgg gaaacggaca gaatccttca      2880
     gatactcaga gcaattaggt aacaaaatat acacactcaa tctcagtttt agcatattta      2940
     taaaggttaa caatgaaagt acaggtaaaa catatacctt actaattgac acaggtgcag      3000
     atatatcaat tctaaaagag aatatagata tatttgataa tataaataat aatatttcaa      3060
     cacaaatatc aggtattggt aaaggttcag ttttttcaaa aggtttagca ttcgtagaat      3120
     tatctacagg taaacatgtc ataccacatg acttccatct agtcgataaa gactttccaa      3180
     ttccaagcaa tggcattatt ggtatagatt tcattaaaaa atataattgc caattagatt      3240
     tcacaccatc aagtgattct ctaatactac ggccaaataa tctaaattat ccaatacata      3300
     taccaattat acacacatgt gataataatg ccacaatact cccagctcgt gctgaagtag      3360
     tccgtcaaat taatataact tccaaagaac aaaatgttct aattccaaat caggaaattg      3420
     aagaaggaat ttttattgga aacactattt ccaataaaaa taatacattt gtccgaatat      3480
     taaacacaac caattcaatt aaattaataa accttaacaa aataaaaata gaaacgctaa      3540
     atgactacga gatagcccaa gaaattagcg aagacagaca aaatactgtc atgaagaaac      3600
     taaatcagaa ctttccaaat ttattcaaac aaattttaac agacctgtgc acaaaatata      3660
     cagatatatt cggactagaa accgaatcaa tatctacaaa taatttttat aaacaagaac      3720
     tgagattgaa agataaagaa ccagtgtata taaaaaacta tagaatacca catgctcaca      3780
     aagaagaagt agacagacaa gtcgataaac tcattcttga taagatagta gagccctcag      3840
     tttctgagta taacagtccg atattactgg tacctaagaa aggtttacca ggttcagata      3900
     agaaacgatg gcgattagta atagactatc gtcaaattaa taaaaaactg ttgtccgata      3960
     aattccccct tccaagaatc gacgatattc ttgaccagct cggaagagca aaatattttt      4020
     catgcctgga cttaatgtct ggatttcacc aaatagagtt aaaagaacac tctagaaatt      4080
     taacgtcttt ttcgaccagc aatggttcat atcgttttac acgattacct tacggtttaa      4140
     aaatagcacc caattctttt caaagaatga tgacaatagc tttttctgga ttaaaccctt      4200
     cacaagcttt cttgtacatg gatgacttaa ttgtcatcgg ttgttctgaa aagcacatga      4260
     tcaaaaacct aacaaatgtt tttgacttgt gcaggaagca taaccttaaa ctgcatccag      4320
     aaaaatgctc tttcttcatg cacgaagtga cattcctagg tcataagtgt actgataatg      4380
     gtattttacc agatgacaca aagtatgatg tcattgaaaa ataccctgtc cccacggacg      4440
     cggacagtgc tagaagattc gttgcattct gcaattacta cagacgtttt atcaaaaatt      4500
     tcgccgacta ttcacggcac ataactagat tatgtaaaaa gaatgtcaat tttcgatggt      4560
     ccgacgaatg ccaaaatgca ttcgattact taaaacaagc tttaattaag ccaacattat      4620
     tgaaataccc agatttcaat aaagaatttt gcataattac agatgcaagt aaatacgcct      4680
     gtggagctgt actaacacaa aattatggag ataaacaact cccagttgca tatgcttcac      4740
     gctcattcac caaaggtgaa agcaacaaat caacaacaga acaagaatta gcagcaatcc      4800
     actgggcaat tacacatttc agaccatata tttatggcaa acatttcact gtaaaaacgg      4860
     atcatagacc gttaacgtat ttgttctcaa tgacaaatcc aagctcgaaa ctaacaagaa      4920
     tgagattaga attggaagaa tatgacttta ctgtcgagta tctgaaagga aaagacaact      4980
     tcgtagctga tgcactatca cgcatcacta taaaagaatt aaaagaaata acacaaaaaa      5040
     tacttaaagt cactactaga tttcaaagta aacagaaaaa ctcctgcgca ggaaatgttc      5100
     aagatttgcc taggcaaaca cttgacaacg cttctaagcc caacgtatat gaagtcattt      5160
     gtaatgacga aatacgaaaa gtagtggcct tgcacataat aaacaataca tgttttttga      5220
     aacatggaaa gaaaattatt gcaagaattg atgttgacga tctgtacacc aatggaaccc      5280
     ttgacttagg tcaattcttc caaaggcttg aaaagcaagc cggtatactt gggatcagcc      5340
     aactcaaagt ggcaccgagc gaaaagatct ttgaattaat ttcaatagaa tctttcaaaa      5400
     atatgggcaa caaaatattg aaaaccataa gagtagcgct actcaagccg gtgaccgtaa      5460
     taaataacag aaaagatcaa gaagcgatac tgtttacata ccatgacgat ccaattcaag      5520
     gaggtcatac aggcattaca aaaactttgg ccaaagtaaa aagacattat tattggaaaa      5580
     atatgacacg tcatatcaaa gagtacatta agaaatgtcc aaaatgcctg atgtcgaaaa      5640
     cgacaataca tacaagatca ccaatgacca taactgaaac accacaatat gctttcgaca      5700
     gagtgatagt agacacaatt ggtccactac cacgatcgga aaatggcaat gaatacgcag      5760
     ttacgctaat atgcgattta acwaaatatt tagtagccat tccaattccg aacaaaagcg      5820
     caaaaactgt tgccaaagct atatttgaag attttattct gaagtacggt ccaatgaaga      5880
     cgttcattac ggacatggga acagaataca aaaattctat tataactgat ctgtgcaaat      5940
     atttaaaaat agacaacata acgtctacag cacaccatca tcagacatta ggtaccgttg      6000
     aaagaagtca taggacattc aatgagtaca ttcgttcata tatatcagta gataaaactg      6060
     attgggacat atggttacag tatttcgagt attgttttaa cacaacacca tcagtaactc      6120
     acaattattg tccatatgaa ttagtatttg gtagacagaa caatctacca attcaattta      6180
     atagcgtaaa tagcatagaa cctatatata atatagaaga ttattctaag gaagttaagt      6240
     ttagactaga acacgcgtat aagagagcgc gaatactttt agaaaacaat aaaattaaac      6300
     aaaaagaaaa aaatgataag aaagtattag attttaaaat agaaatagga gaccaagttt      6360
     atttaaagaa cgaaacaggt cataaactag aatcttcata tataggacca tttgaggtca      6420
     ttagtataga aaaaaataat aatataatta tcaagaataa gaaaaataaa aaacaaatag      6480
     tacatagaga taggctaaaa aaaaattttt cataattaaa aggttcataa aatcggtctg      6540
     atcaacctaa tataataaaa ttaaaaaaaa aaaaaaaaaa aaaaaaaata aaaaaaatgg      6600
     ttcatttatt tcactctcat tttattcaaa ccaacaaaaa aaaaaatttt taattatttt      6660
     cataaagcca caacaataaa acaaaaattt atatattaag aatatatatt aaaaaaaaaa      6720
     aaaaaaaaaa aaaataatat atatatmtaa ttaaatttaa aattaaataa ataattaaat      6780
     aactacatat attacgttat ttttttaaaa agggagg                               6817
//
ID   Gypsy-2_DMo-LTR repbase;    DNA;    INV; 519 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-519
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 519 BP; 178 A; 107 C; 75 G; 159 T; 0 other;
     tgtagtatgt ctcatttaat aatatatata cccgacactc aatactttaa aatgtacaca        60
     tagtgacaca ctatgtaaat atacaaccca ataatgtaaa cataaatgca cttgagatga       120
     tcggacatat atacatatat accgcttata tacaagaggc gtgggaatag ccgcgtcagc       180
     acttgaccgc tccacaagcc aacggctgcc gcttgcaaac atatatatat atgctcacat       240
     atatatatat atatatatgc tcatgagcag aggctcatat agcaattcta atgtatatgc       300
     cctttgcata tacatacaca catactacgc tctctcgctc tgctgccttc tgcggcagag       360
     atatatataa taagaaatat atgtatctta gcttaagact ttaattcatt tttcacattt       420
     gacattcaat aaactgaact cagacagagc agatgcgttc acggcgtttc attaacatta       480
     catggcgtta attacaagtt acaagttatt atctttaca                              519
//
ID   Gypsy-2_DPer-I repbase;    DNA;    INV; 4308 BP.
XX
AC   super_2;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DPer_;
KW   Gypsy-2_DPer-LTR; Gypsy-2_DPer-I.
XX
NM   Gypsy-2_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4308
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_2; Positions 5384944 5380637.
XX
CC   Positions [3179-3664] - Integrase core
CC   'GTGAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4099
FT                 /product="Gypsy-2_DPer-I_1p"
FT                 /translation="MNSNMTKNEAPTFYQMATIAEFSPHQETFCIWKEKFD
FT                 IHLCELNVKEENTKKAVLLKSIGTAAYTVLHSLCDPVSPVSKAYKELCEIL
FT                 KTHYTPPTLIFRERKQFHMSTKSEDETVAEWYARVKQLALECKFGSNLEAF
FT                 VLNQFVMSLPNPIYERICEEDENLTLADALKKAMIMETKISTRKTEHNVNY
FT                 MHQKNGTSQWQRQRGENRDQAKSNGRSHFKGNRNVSYRGGRSDGDGDGETD
FT                 CDAGREKKQQPCTHCGWRNHNSNNCKYKACKCHSCGKIGHLASICKNKSKK
FT                 SVNYVSQTKHSDNNFDNDNYNFSIYSVDTTSTSGVYYLPVKIDGNITKIAC
FT                 DTGAPCTLVPKTFYESLNTSRPLRKCLVPYVDYNGDSIKVIGEYDATIEYR
FT                 GLKKQIVVVVTNAVSPPLLGRTFLRAFNFELMQVNNVYVNEPNSVITEQIK
FT                 SEFAEVFEPRLGSYTTNTISLLLKEDAKPIFFKPRSVPLAWKEKIEVQLRK
FT                 FIDDGILEQVVSSEWATPLVPILKPNGDIRICGDYKVTLNRSLVDVKYPLP
FT                 RIDDIFAALEGGTLYSKLDLSNAYNQLNLDEQSQNLCTWSTHIGLLKVKRL
FT                 PFGIKTAAAIFQKTMEGLFQGMRGVVVYQDDITVTGRDLQEHISNLKAVLR
FT                 KLKSVGLKLNDKKCEFFKSKICYLGFSIDRIGLSKNNDRVASVLFAPAPEN
FT                 VSQLRAFIGMVNYYSKFINNFAQIMSPLYALLKKNTKFNWTRECQSAYEEV
FT                 KKEVTSEQVLVHYNPDQPLVLTTDASSHAVSGVLSHKCNEDIKPIAFVSRA
FT                 LSKSEHNYSTIEKEALAIVFCVSKLRQYLLGNKFILRTDHKPLLSIFEDLK
FT                 GLPLMASARMQRWALTLSGFQYTVEHIKGTLNIADGLSRMPQWETAVPNED
FT                 YNYIHFIQSEKVFKISFKEIARETRRDPILSKVCEAINTGSKTRLNGSEFS
FT                 AYISKTNELSVEYDCILWGHRVVIPTKLRQAILAEFHASHLGIVKTKMLAR
FT                 SYVWWPCIDSEIEKLIRDCIPCQELQSSPEKSLLIPWKSTGKAWSRVHIDF
FT                 AGPIRGFHLLVIIDSYTKWAEVFKTKEITSLFTINKLREVFCRYGLPDVLV
FT                 SDNGRQFTSDDFKTFMKNNGVNHIFTAPGHPATNGQAENFVKTVKKSLYAN
FT                 IKANERQDFNTILNRFLIDYRNTIHCTTGESPAKLFFGRTLRTRFSLLKPP
FT                 TVESIINKKQTECVVNHKGRRSTEFFKGQKVMVRDYKNPNKASWTQATVKQ
FT                 QLGPRSYCCILANNNREIKRHLDQIRNQSTNNHTSPNAKTPDVESNCSVDD
FT                 NSKTNNEQIVSQPTPTRRELRPREAGKVVKRI"
XX
SQ   Sequence 4308 BP; 1609 A; 717 C; 843 G; 1139 T; 0 other;
     taattggcga cgaggataaa ataaaacgta ttaatataca tacacatgtt aaaagtgcat        60
     ataatatatg aatagcaaca tgacgaaaaa tgaagcacca acattctatc aaatggcaac       120
     aattgctgag ttttcgccac accaagaaac gttctgcatt tggaaggaaa aattcgacat       180
     acatttgtgc gaattgaatg tgaaagagga aaacacaaaa aaggcagttt tgttgaagtc       240
     gatcggtaca gcggcttaca ctgtactaca tagtttgtgc gatccggtat cacccgtatc       300
     aaaagcatac aaagaattat gtgaaatttt aaaaacacac tacacaccac ctacactcat       360
     attcagagaa agaaaacaat ttcacatgtc cacaaaaagt gaagatgaga ctgtagcgga       420
     gtggtatgct cgagttaaac aattggcatt ggaatgcaaa tttggctcaa atctggaagc       480
     gtttgtatta aaccaatttg tgatgagcct tcccaacccc atatatgaaa gaatatgtga       540
     agaagacgaa aatctaactc tggctgatgc actcaagaag gcgatgatca tggagacgaa       600
     gatcagcaca aggaagacag aacacaacgt caactacatg catcaaaaga acgggactag       660
     tcaatggcag aggcaaagag gcgagaacag agatcaagca aagagcaacg gcagaagtca       720
     tttcaagggc aaccgaaacg tgagttacag aggcggcaga agcgacggtg acggcgacgg       780
     cgaaaccgac tgcgacgctg gcagagaaaa gaagcagcag ccatgcacac actgtggctg       840
     gcgaaatcat aactcaaaca attgcaagta taaggcatgc aaatgtcaca gctgtggaaa       900
     aataggtcac ttggcgagca tttgtaaaaa caaatcaaaa aaatccgtaa attatgtatc       960
     tcaaacaaaa cattctgata ataattttga taatgataat tataactttt ctatctatag      1020
     cgttgataca acctcaacta gtggagtgta ttatttacct gtaaaaattg atggaaacat      1080
     aacgaaaatt gcttgcgaca ctggtgcacc gtgcacattg gttccaaaaa cattttacga      1140
     aagcttaaat accagcagac cacttagaaa atgtctagtt ccatatgtag attacaatgg      1200
     agattcaatc aaagttattg gtgagtacga tgcaacgatc gaatatcgag gtctaaaaaa      1260
     acaaattgtt gttgttgtaa ccaatgcagt gagtccacct ttgctaggta gaacattttt      1320
     gagagctttt aattttgagt taatgcaggt gaacaatgtg tacgtaaatg aaccaaattc      1380
     tgtaattaca gaacagatta aatcggagtt tgctgaagtt tttgagcctc gtttaggttc      1440
     atatactacg aatacgatat cgttactatt aaaagaagat gcaaaaccaa tatttttcaa      1500
     gcctaggtca gtaccattag catggaaaga aaagattgaa gtgcagttac gaaaattcat      1560
     agatgatgga attttagagc aagttgttag ttctgaatgg gcaacacctt tagtaccgat      1620
     tttaaaacca aacggtgaca tacgaatttg tggtgactat aaggttacat taaaccggtc      1680
     tttagtcgac gtaaagtatc cactacctcg aatagacgac atttttgcag cgcttgaagg      1740
     gggtacactg tattcaaaac ttgacctgtc aaatgcttac aatcagctaa atttagatga      1800
     gcaatctcaa aatttgtgta cttggagcac acatattgga ctattgaaag ttaaacgctt      1860
     accatttggt ataaaaactg cagcagctat ttttcaaaaa acaatggaag ggttgtttca      1920
     gggtatgcga ggagttgtgg tttatcaaga tgacataaca gttacaggac gagatcttca      1980
     agaacatatt tcaaacctaa aagctgtact tagaaaactg aaatcagttg gacttaaatt      2040
     aaatgacaag aaatgtgagt tctttaaatc caaaatttgt tacctaggat tttcaattga      2100
     caggatagga ctgagcaaaa acaatgatag agttgcgagt gtattgtttg caccggctcc      2160
     ggaaaacgta tcacagctta gagctttcat aggcatggta aattattatt caaagtttat      2220
     caataatttc gctcagataa tgagtccttt atatgcatta ttaaagaaaa atacaaaatt      2280
     taattggaca cgcgaatgtc agagtgcata tgaagaggta aagaaagaag taacttctga      2340
     acaagtttta gttcactaca acccagatca accgttagta ttaacgactg atgctagcag      2400
     tcatgcagtt tcaggtgttt tatcacataa atgcaatgaa gatatcaaac caatagcatt      2460
     tgtatcaaga gcattatcca aaagcgagca taattacagt acaatcgaga aagaggccct      2520
     ggctatagtg ttctgtgtga gtaaattaag acagtatctt ttaggaaaca agttcatcct      2580
     tcgaacagat cacaaaccat tactaagcat atttgaagac ctgaaaggac ttccattgat      2640
     ggcctctgca cgaatgcaaa gatgggcact gactttgtca ggttttcaat atacagttga      2700
     acacataaag gggaccttaa atatagcaga tggactctca agaatgcctc aatgggaaac      2760
     ggctgtacca aacgaagact ataattacat acattttata cagtccgaaa aggtgttcaa      2820
     aattagcttc aaagaaatag ctcgtgaaac acgacgtgac ccaatattat caaaagtttg      2880
     tgaggcaatt aacactggtt cgaagacaag attaaatggc agcgagtttt ctgcctacat      2940
     ctcaaaaaca aatgaacttt cagtggaata tgattgtatc ttatggggac acagagtagt      3000
     aattccaacc aaactgagac aagctatttt agcagaattt catgcatcgc atttgggaat      3060
     agtaaaaacc aaaatgttag cacgttctta tgtgtggtgg ccttgcatag attctgaaat      3120
     tgagaaatta attcgagatt gtattccttg tcaggaacta caatcaagtc cagaaaagag      3180
     tctgttaata ccgtggaaat ccacaggaaa ggcttggagt cgagtacata tagactttgc      3240
     aggaccaatt agaggttttc atttattggt tattatagat tcttatacaa aatgggcaga      3300
     agtattcaaa acgaaggaaa taacttcatt gtttactatc aacaagctta gagaagtatt      3360
     ttgtcgatat ggtttaccag acgtgttagt tagtgacaat ggacgacagt ttacttctga      3420
     tgattttaaa acgtttatga aaaacaatgg tgttaatcac atttttactg ctccaggaca      3480
     tccagcgact aatggtcaag cagaaaattt tgtaaagact gttaagaaat cactatatgc      3540
     aaacataaag gctaatgaaa gacaagattt taatacaatt ttaaatagat tcttgatcga      3600
     ttacagaaat acgattcatt gtactacggg cgaatctcct gctaaattat tttttggtcg      3660
     tacactaaga acaagatttt cgttgttaaa accacctacg gtcgaaagca taataaataa      3720
     aaaacagact gagtgtgttg taaatcacaa aggtagacga agcacagaat tttttaaggg      3780
     tcaaaaagtt atggttaggg actacaaaaa tcctaacaaa gcaagctgga ctcaggcaac      3840
     tgtaaaacaa caactgggcc cgcgttcgta ttgttgtatt ttggcgaaca ataacagaga      3900
     aataaaacgt cacctggatc aaattagaaa ccaaagcact aacaatcata catcgcctaa      3960
     tgcgaaaaca cctgatgtcg aaagcaattg ttcagtagat gacaattcca aaaccaacaa      4020
     tgaacaaata gtttctcaac caacacccac caggagagag ttgagaccac gtgaggcagg      4080
     gaaggtagta aagcgtattt aacaataaaa taatataaag aaaggaatta tgaaatcaaa      4140
     ttatgtacaa attaaacact gaaacaaata ctaaatagat taagaagaaa gaaaaatacg      4200
     aaatcacata aattttatat acgataatta gattaagtac acaaatcaaa ttgttataag      4260
     aaaatagatt tgtaaatgac atgtatatta aacatctaag gagaggcg                   4308
//
ID   Gypsy-2_DPer-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   super_2;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DPer_;
KW   Gypsy-2_DPer-LTR; Gypsy-2_DPer-I.
XX
NM   Gypsy-2_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-110
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_2; Positions 5380636 5380527.
XX
SQ   Sequence 110 BP; 42 A; 19 C; 19 G; 30 T; 0 other;
     tgttaggtat tatattaata tccatatacg gtcacaccat ccaagggata tagaataaaa        60
     gagaatcttg aagacaacgc gtgcttaaat ctgagtgtca atacactaca                  110
//
ID   Gypsy-2_DRh-I repbase;    DNA;    INV; 5038 BP.
XX
AC   AFPP01020181;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DRh_;
KW   Gypsy-2_DRh-LTR; Gypsy-2_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5038
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01020181; Positions    2520    7557.
XX
CC   Positions [2429-2935] - Reverse transcriptase
CC   Positions [3980-4456] - Integrase core
CC   'TTAT' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..984
FT                 /product="Gypsy-2_DRh-I_1p"
FT                 /translation="MPDEDLNQFTVLQLKNWLGALGLQTSGSKTELIVRLQ
FT                 ALSTEVRGDPPAKTTSRQGGQPQNSESVMEPEDGAASLLLQQQFGEPSFDQ
FT                 EALTSPPIESFGIGQLSLVDAEKATLEKIRTEIDASMAVLHRIHTEINDAN
FT                 NSKTHHVRQIHDVIGNNFENVADGNSDTHSNAVKINSTEVTRANDNIGSGR
FT                 PSVEKETADSDDQRHVEKVNKLLESPAAALALAKEVTMEYDGSRCPRNWIT
FT                 QIQNIAQLYNLDSGGTRMLLLAKLKGNSQLWLHANAINRSFRCKNVQRRTK
FT                 KRIPKPSMAPRGKVCCIFRGQNHASKRHKY"
FT   CDS           707..1681
FT                 /product="Gypsy-2_DRh-I_2p"
FT                 /translation="MMAAGVLVTGSHRFKTSRSFTIWIPGARVCYYLPSLR
FT                 EILNFGFTQTQLIVAFGAKMSKGELRNAFQNRQWRPEEKFVAYFEDKIMLA
FT                 NDINIDVEELLENIIEGIPAAGLRDQARIQCFSEPEQMLRAFSGIRLPERK
FT                 RGGISSRDLSGKIAGNKDLRCANCNSKGHFAKECLKPKREPGSCYACRAFG
FT                 HFVGQCPERKSANTNNYVRYFKIFFHNNSNAPLVAACLIDTGSPISFAKIS
FT                 SLSNIVNLESVSENFFGLNKSQLKIFGKILCYVIKERIKCYFDLYLVQKES
FT                 MSHDVVLGRKTRSRHLEDGNGRACETKMQTKTK"
FT   CDS           join(2444..3508,3512..4720)
FT                 /product="Gypsy-2_DRh-I_3p"
FT                 /translation="MQPSESEYASPIVLVKKKTGDIRLCIDFRKLNKVLIK
FT                 DNYPIPIIDDLLDKLVNKKVFTKLDLKNGYFHVFVDKESIKYTSFVTPLGQ
FT                 FEFLRMPMGLKTASAVFQRFVNKIFEDLIRNNKVIVYMDDIMIASKDTEEH
FT                 LQVLKEVFLRLVQNKLELRMDKCEFLQTNIKYLGFIINGEGIRADDKGIEA
FT                 IKHFPTPDKTQSVQSFLGLCSYFRRFIKEFSTLAKPLYDLLKKDEKFKFGE
FT                 KEMNCFLILKDKLVQAPVLAIYNYKDDVELHCDASALGFGAVLCQKKEDGK
FT                 LHPIFYFSKRTSVAESKYHSFELETMAIIHALRRFRIYLNGKRFKIITDCN
FT                 SLKIELNPRIARALELQNYDYELIHREGNKMQHVDALSRCANILIVESNTF
FT                 EDNLIICQAKDPKIQEIKKHLEKNEHKLFEMRNGIVYRKCNDGRLLFYVPT
FT                 DMEEHVMYKCHNEIGHIGRDKMLDIISKTYWFPNAKDKCLSHIEYCLKCMA
FT                 FSPKTGKEGFLHCILKGNKPFELIHIDHYGPVDSGRSKKHIFVVIDGFTKF
FT                 VRLYATKSNNTREVITALKDYFRAYSKPKCIISDRGSCFTSKEFDDFLLEF
FT                 NVKHMKIATGSPQANGQVERVNRSLGPMIAKLIEPEKGIYWDTVIDKVEHV
FT                 LNNTQHRSIKQSPSKVPFGIEQRGQIVDELKEKLEELENMPEDRNLEKIRN
FT                 ETEINQEKAQAYNKVHYDKTAKKPSEYKIGDYVMVKNFDSTAGVSRKLIPK
FT                 NKGPYVI"
XX
SQ   Sequence 5038 BP; 1858 A; 849 C; 1039 G; 1292 T; 0 other;
     acatcagaag tggtcactat gcctgacgaa gatttaaacc aatttacggt gctccagcta        60
     aaaaactggt tgggtgctct cggactacaa acttctggct caaaaacgga gttgatagtg       120
     cgtctgcagg ctttgtctac ggaggttcgt ggcgaccccc cagctaaaac aacaagtcgc       180
     caaggcggtc agccgcagaa cagcgaatct gtgatggagc cagaggatgg agccgcatcg       240
     ttgttgctac agcaacagtt cggagaacca tcgttcgacc aggaagcatt gacgtcacca       300
     cccatagaaa gtttcggcat agggcagctc tcccttgtag atgccgagaa agctacattg       360
     gaaaaaattc gcaccgaaat agatgcaagc atggccgtat tgcatcgaat tcacaccgaa       420
     atcaacgacg ccaacaacag caaaactcat catgttcgcc aaatccatga cgtcatcggc       480
     aacaacttcg agaatgtcgc cgatggtaac agtgacactc acagcaacgc tgttaaaatt       540
     aacagcaccg aagttaccag agccaacgat aacattggca gtggaagacc cagtgttgaa       600
     aaagagaccg ctgacagtga tgatcaacgc cacgtcgaga aggtaaacaa actcttagaa       660
     tctccagcag cggcgctcgc attggcaaaa gaagtaacca tggagtatga tggcagccgg       720
     tgtcctcgta actggatcac acagattcaa aacatcgcgc agctttacaa tctggattcc       780
     gggggcacgc gtatgctact acttgccaag cttaagggaa attctcaact ttggcttcac       840
     gcaaacgcaa ttaatcgtag ctttcggtgc aaaaatgtcc aaaggagaac taagaaacgc       900
     attccaaaac cgtcaatggc gcccagagga aaagtttgtt gcatatttcg aggacaaaat       960
     catgctagca aacgacataa atattgacgt ggaggagctt ctcgagaata tcatagaggg      1020
     aattccagca gcaggattgc gtgatcaggc tcgtatacaa tgtttctccg agccagagca      1080
     gatgttaagg gctttttcag gaatccgttt gccggagcgt aagcgaggag gcatttcctc      1140
     gagggattta tccggaaaaa ttgcaggcaa caaggatttg cgttgcgcca attgcaattc      1200
     caaagggcat tttgcaaagg agtgtcttaa gccgaaaagg gagcctggtt cctgctatgc      1260
     ctgcagggcg tttggacact tcgttgggca atgcccggag cgcaaaagcg caaacactaa      1320
     caactatgta agatatttta aaatattttt tcacaataat tctaatgccc cattagttgc      1380
     agcgtgcctc atagacactg ggagtccaat ctcttttgct aaaataagca gtttatctaa      1440
     tatagttaat ttggaatccg tttcggaaaa ctttttcggg ctaaataaga gccaactaaa      1500
     aatatttgga aaaattttat gttacgttat aaaagaaaga ataaagtgtt attttgatct      1560
     ttacttagtc caaaaagagt ctatgagcca tgatgtagtt cttggaagaa aaactagatc      1620
     taggcacctt gaagatggta acggaagagc ctgcgaaaca aaaatgcaaa ctaaaactaa      1680
     ataataatgc aaatgttaat gcatacaaca caaaacatac tttaaatgtt aatattatgc      1740
     aagaaaataa gtttgaaatt aataaggata cagttagtga aacagttagt gatacagtta      1800
     gtaatacagg cagtgaaaca gttagtgata cagttagtaa tacaggcaat gaaacagtta      1860
     gtgatacagt tagtaataca ggcagtgaaa cagttagtga tacagttagt aatacaggca      1920
     atgaaacagt tagtgataca attagtaata caggcaatga aacagttggt gaaatagtta      1980
     gtgaaacagt tagtgaaata gttagtgaaa cagttagtaa aacagttagt gaaacagaga      2040
     gtcccagatt taatcaaaca gttagtcaaa aggaaacaac gaaatccaca gttaataaaa      2100
     cggttagtcc cgaaattagt aaggcagtaa gtcctacggt tagcgagata attaataact      2160
     atgaagaaac ggttagagag atgttcagta taaattgcct agaaactgaa gaggcggatt      2220
     acatatgcgg cacaaatgat gaccaggatt taaatcgtcg tttaaaggag gttattgaaa      2280
     gcaattataa gacattagaa aggccaaagg aaccttttat taaatgcgaa ttaaattaaa      2340
     tttagaaact tcgaaaccat ttagttgtgc tccaagacga ctcgcatatt aggagaagga      2400
     aaaattgcaa cttttgctag atgattattt aaataacagt attatgcaac ctagcgaatc      2460
     ggaatacgct tcaccgatag tattagtcaa gaaaaaaacc ggagacataa gattgtgcat      2520
     agactttaga aaacttaaca aggtattaat taaagacaat tatcccatac cgattatcga      2580
     tgacctatta gacaaattag ttaacaaaaa agtttttacg aaacttgatt taaaaaatgg      2640
     ttattttcat gtttttgttg ataaggaatc gatcaaatac acctcttttg ttacaccgtt      2700
     aggtcaattc gagtttctca ggatgccaat gggtctaaaa actgcatcag cagtatttca      2760
     gaggtttgta aataagattt ttgaagatct gattagaaac aacaaagtaa ttgtatacat      2820
     ggacgacata atgatcgcca gcaaggatac cgaagaacat ttacaagttt taaaagaagt      2880
     gtttctcaga ttagttcaaa acaaattaga attacgtatg gataaatgcg agttccttca      2940
     gactaatatt aaatatttag gatttatcat aaacggtgag ggtatcagag ctgacgacaa      3000
     ggggatagaa gccataaaac attttccaac cccagacaaa acacagtccg ttcaaagttt      3060
     tcttggcttg tgttcatatt tccgtagatt cataaaggag ttttcaacgt tagccaaacc      3120
     attatatgat cttctgaaaa aagatgaaaa atttaagttt ggagaaaagg aaatgaactg      3180
     ttttttaatt ttaaaagata agctagtgca agcaccggta ttggcaattt acaattacaa      3240
     agacgatgtg gaactgcact gtgatgccag cgctcttggt tttggagctg ttttgtgtca      3300
     aaagaaagaa gacggaaaat tacaccccat cttttatttc tctaaacgca catccgttgc      3360
     agaatcaaaa tatcacagct tcgagctgga gacaatggcc attattcacg cattgcgtag      3420
     atttcgaata tatttaaatg gaaaacgatt taagattatt actgattgta attctcttaa      3480
     aattgagctt aaccctcgaa tagctaggta ggcgttagag ctccaaaatt atgactacga      3540
     gctgatacat agagaaggta ataagatgca acatgttgac gctcttagta gatgcgcaaa      3600
     tattttaata gtagaatcaa atacgtttga ggacaattta ataatctgtc aagccaagga      3660
     tccaaaaatt caggaaatta aaaaacatct ggagaaaaac gaacataaat tattcgaaat      3720
     gagaaacgga atagtgtata ggaaatgtaa cgatggcaga cttttatttt atgttcctac      3780
     ggatatggaa gagcatgtta tgtacaagtg ccataatgaa atcggacaca taggaaggga      3840
     caaaatgtta gacatcattt cgaaaactta ttggtttcct aacgctaaag acaaatgttt      3900
     aagtcacatt gaatactgtt taaaatgtat ggcattttcc cctaagacag gcaaggaagg      3960
     atttttacac tgcattctaa aaggcaacaa accgttcgag ttaatacata tcgatcatta      4020
     tggcccagtc gattcaggta gatcaaagaa acatattttt gtagtcatcg acggtttcac      4080
     aaagttcgta cggttatatg ccactaagag caataacaca agggaagtca tcacagcttt      4140
     aaaggactac tttagagcat atagtaaacc aaaatgcata atttcagata gaggaagctg      4200
     tttcacgtcc aaagagttcg atgatttttt attagagttt aatgttaagc atatgaagat      4260
     agcaacggga tcaccgcagg caaacgggca agttgaaaga gttaacagaa gtcttggacc      4320
     aatgatagct aagctaatag agccggagaa aggtatatat tgggacacag taatagataa      4380
     agtagaacat gtactgaata acacccaaca tcgcagtata aaacaaagtc caagcaaggt      4440
     gccgtttggg atagaacaaa gaggacagat agtggacgag ttgaaagaaa agttagaaga      4500
     attggaaaat atgccagaag acagaaattt agagaaaatt agaaacgaaa ccgaaataaa      4560
     tcaggaaaaa gcacaagcgt acaacaaggt acattatgac aagacagcca aaaagccttc      4620
     agaatacaaa ataggagact acgtaatggt caaaaatttc gatagcacag caggagtttc      4680
     tagaaaatta attccaaaaa ataaaggtcc ttacgtaatt tgaaaagtat taagaaatga      4740
     cagattctta ttaaaagacg tagaaggatt tcaagtatcc cgtaacccat accaaggtgt      4800
     ctggagcatt aaaaatatta agcactggtt aaaaaagaaa aatgaaaagt aaataaataa      4860
     atagcagaac ataactatta aggaacgatt ttgtaaaata attgtatata tttgtaaaaa      4920
     caaaatgtga attgtaacta aaataagtaa atttttttgt aattaaaaac cttatgtaaa      4980
     acaattttat accaaagtta acagtgatca ggggatcatc cagtcaggac ggccgagt        5038
//
ID   Gypsy-2_DRh-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   AFPP01020181;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DRh_;
KW   Gypsy-2_DRh-I; Gypsy-2_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-328
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01020181; Positions    2192    2519.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 328 BP; 119 A; 51 C; 62 G; 96 T; 0 other;
     tgtagcagta tagatacatg caaggcccac tgtaccatat acatttagat aattacgcat        60
     taagccttct gtataacaat aagatagatt ctccgttaga tttaagcatt atactgtcat       120
     ccctttctag cacgtacact tagcatttaa ggataaaatg tatgcatagc agactgacgc       180
     agttaaattg tatggaagca tagagaaaga tcgagacgcg gcattcagtg gcttgcgttt       240
     gagaagaaca gttgacagaa attgaataaa gaaattaaga gaaatatata catttaatta       300
     aacgagtgaa gtgatttatc cttttaca                                          328
//
ID   Gypsy-2_DSe-I repbase;    DNA;    INV; 6411 BP.
XX
AC   AAKO01000708;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DSe_;
KW   Gypsy-2_DSe-LTR; Gypsy-2_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6411
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01000708; Positions  264190  270600.
XX
CC   Positions [4208-4687] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           579..1865
FT                 /product="Gypsy-2_DSe-I_3p"
FT                 /translation="MLRPGQYQNKAGDSSGDELIPSYLERTLEQSKKMNAE
FT                 QVARMEAKVQAALEQQARLFDEKIASLTNQLGKARVSAPQIEIFQEAEIVP
FT                 GTRCDEPLDVAKSIPEFDGKIENYVSWRQAASAAYKVFEPYSGTSRHYQAV
FT                 AIIRNKVRGPADAVLASFNTVLNFKAIIARLDFTYADKTPVHVIQQQLSTL
FT                 QQGNLPLIQYFDEVEKKLTLLTNKTLMTHDSVAAAILNEKFRNDALHVFVS
FT                 GLKKSLKWAVFPAQPIDLPSALALAQEAESSNERGYFAANFARHLEEKPQK
FT                 QNSPKAQNWRQNAQQAKEENPQNRNPYFQKNQKDRNDQQNPNSAKQRFNNQ
FT                 KSQGRGPEPMEVDSSSRSRQPTQGYWNNQRYGDQSMRTQQNLNHLPQEESS
FT                 GDYESRSQHETTQVEDDLSEVESCNFLAEAPCFRS"
FT   CDS           5018..6409
FT                 /product="Gypsy-2_DSe-I_2p"
FT                 /translation="MTLTEATLRLNDYSHADYIPIVDGDVTIWDSYTYLGH
FT                 TTNLTSFETYIDETWKLIDKLPKDHMRQVLKTDVQHIATLITSLTVHHRQA
FT                 RSINMIGSALKAIAGTPDFDDWEQIKFKQNQLIESESKQIEINTKFQARLN
FT                 DVSRALNAILKPDAEVEHFYATILAKNRMIITNLEDLILTVTLAKINLISP
FT                 LILDSIDIKELLNEQLTNTSITDLLEVSHIKAFQNSELLYFLIKYPKPLLS
FT                 CKKIDILPVQHNNIILDLEEGNTVADCGTRTFAVRDCAATVSTTFCRRLQN
FT                 TSCAQQLVSGTVAHCATRPGHLAPVIVIGEGIAVINNATMNVVDSTGHKQI
FT                 IAGTFLATYDDYVSLNGTRYVNHRGILKKKPAVSTSAVVNVTLFREHLSLP
FT                 FLHDLTMKNLRHIGDLRTGLSSRSYGGLALIALFLLLLGTWKLYQCRMGKK
FT                 KPEDAFQTSRGGVNTRKLK"
FT   CDS           2063..4924
FT                 /product="Gypsy-2_DSe-I_1p"
FT                 /translation="MLESLNDFDGIIGLDLLKQINAQIDLTNNVIKHDHGM
FT                 EEIEFTKCQQVNHIQINDADVPPAIRPTFDSMIKKMVKAFADVNESLPYNI
FT                 NTVATIPTDDEPVYSKLYPYPKGVSDFVNAEVKQLLANGIIRPSKSPYNNP
FT                 IWVVDKKGIDEAGHKQKRLVIDFRKLNHKTTDDKYPIPSISTILSNLGEAQ
FT                 YFTTLDLKSGFHQIELAERDRKKTAFSVNNGKYEFCRLPFGLKNAPSIFQR
FT                 AIDDVLREQIGRICYVYVDDVIIFSKSKEDHVRDIEWVLKNLRDAGMRVSQ
FT                 EKSKFFKKNVEYLGFTVCRGGIQSSPDKIKAIKDFPPPKTLFALRSFLGLA
FT                 RYYSCFITGFANIARPLTDILKGENGKVSANYSRKVIIELSPEQNEAFDRL
FT                 KNILASEDVMLSYPNYKKPFDLTTDASGCGLGAVLSQDGRPITMISRTLRG
FT                 NEVNFATNERELLAIVWALKNLRNYLYGVKNLNIHTDHQPLTFSVSDKNPN
FT                 AKIKRWKAFIDEHNANIIYKPGKENLVADALSRQNVNALEDSVDSDVATIH
FT                 SEESLTYTIEATDKPVNCFRNQIILKEGTIPQQNTLILFKTKTRHILHFSD
FT                 HSTLLQSIKDAVNADVVNAIHCELPILAFIQHGLVMAFPSTTFRYCKNLVT
FT                 DIVNPMEQREIATAEHNRAHRAAQENAKQILRDYFFPKMGHLTSEIAANCR
FT                 ICTMSKHDRHPRKQELGKTPIPSFAGEMLHIDVYSTGGKYFLTCIDKFSKF
FT                 AVVQPIRSRAIVDIKAPLLQLLNMFPETKAIYCDNEKSLNSETIKSMLSNN
FT                 FGIVISNAPPLHSLSNGQVERFHGTLGDIARSYKLETRVEDTVENILFATI
FT                 KYNRSIHSVTNERPIDVIHAASKDSTVQIKEKIASAQQKTLDQMNKKRIYK
FT                 SYLVGDRVWIKNNKRLGNKLSPLFTEGIVEADLGTTVLIKGRVVHKDNLK"
XX
SQ   Sequence 6411 BP; 2182 A; 1474 C; 1280 G; 1475 T; 0 other;
     attggcgccc acacggaaag taacccagtt actctaactc ttcgagctaa cgcaaagagt        60
     cgcggtacgg ttcaataaag tgaataacaa aatcaacaag tgaacagtta ctctattatc       120
     taaccgaaat aactcttcga gctaaagcaa agagttgcgg tatgatttaa taaagtaaac       180
     aaaaaacaca acaaatccaa ttttgtgaaa aaaaaaccca aaaatagtgc aaaaatacgc       240
     acacaacaaa tacaaaaaaa ttaagaaccc cagccgaaga gctgagcgag taaaaaaaat       300
     caaatcaaca agtacgagcg gccgacggga aacagcatat cgcagcggcc accacaccac       360
     ttgatcgaag ttcgaatttc atatataaaa aaaatgtaag tgagatgttc atttttattt       420
     tttcgaataa agtaaataaa atgctcagag ctgtcagtgt gagatctcag tgtttataaa       480
     aacaaactta aataaatttc tgcctgttgc aataaagcgt taaagaacct ctataagctt       540
     aaacaaaaaa ttaattccga aacgatttga gtctttttat gttgcgtcca gggcaatacc       600
     aaaacaaagc gggcgacagt agtggcgacg aactaatacc ctcatactta gagcggactt       660
     tagaacaatc aaaaaaaatg aatgctgaac aggttgcccg aatggaggca aaggtgcagg       720
     cagcccttga gcaacaagcc cgattatttg acgaaaagat agcctccctg acaaaccagc       780
     ttggtaaagc tagagtttct gcaccacaga tagaaatttt ccaagaagct gaaatagtgc       840
     cagggacccg ctgcgatgag cccttagatg tagcaaagtc catccccgag ttcgacggaa       900
     agatagaaaa ctatgtttcg tggaggcaag ccgcttccgc agcctataaa gtcttcgaac       960
     catacagcgg cacctcaaga cactaccagg cagtagctat aatcagaaac aaagtaaggg      1020
     gaccagcaga tgctgtgctg gcctcattca acacagtgtt gaattttaaa gccattattg      1080
     ctaggttaga ttttacatac gcggacaaga caccggttca cgtaatccaa cagcaactaa      1140
     gcactcttca gcagggcaac ttgccactaa tacagtattt cgacgaagtc gaaaaaaaac      1200
     tcacactatt gacaaataaa acgctaatga cgcacgactc cgtcgcagca gctatattaa      1260
     acgaaaaatt tagaaacgac gcgcttcacg ttttcgtctc aggattaaaa aaatccctga      1320
     agtgggcagt cttcccggcg caacccatag atctcccctc agccttagct ctagcccaag      1380
     aggctgaatc aagcaatgag agaggctatt tcgcagcaaa tttcgcaaga caccttgagg      1440
     aaaaacccca aaaacaaaat tcgccaaagg ctcagaactg gcgtcagaac gcccaacagg      1500
     caaaggaaga aaatcctcaa aacaggaatc cctacttcca aaagaaccaa aaagacagaa      1560
     atgaccagca aaacccaaat agcgcaaaac agcgatttaa caaccaaaag tcccaagggc      1620
     ggggtcccga gccaatggag gtagattcct cctcgcgctc caggcaaccc acacagggtt      1680
     actggaacaa tcaaaggtac ggcgaccagt ccatgaggac ccaacaaaac ctaaatcatc      1740
     taccccaaga agagagtagc ggtgactacg agtcacgatc acagcatgaa acgacacagg      1800
     ttgaggacga tttgtccgaa gtcgaaagct gtaatttttt agcggaagct ccctgcttcc      1860
     gttcataaga cgaacggttg cagggcgaat tatcagactt ctgatagaca caggggcctc      1920
     aaaaaattat ataaaacccc ttcccgaact ggcacattgg gtgccagttg acagcccttt      1980
     tcaagtcaaa tcaattcatg ggcacactaa gatcgagcag aaatgcccca tccacctttt      2040
     cggtgtaaag tcctattttt tcatgctaga gtcacttaat gactttgatg gcataattgg      2100
     ccttgacctg ttaaaacaga tcaatgccca aatagatctg acaaacaacg tcattaaaca      2160
     tgaccatggg atggaagaaa tcgagttcac taaatgtcaa caggtgaacc atattcaaat      2220
     taatgacgca gatgtccctc ctgctatcag acccactttt gatagtatga tcaaaaaaat      2280
     ggtaaaggca tttgcggacg ttaacgagtc cctaccgtac aacataaata cggttgccac      2340
     cataccaacg gatgacgaac cagtttactc aaaactgtat ccgtatccaa agggcgtgtc      2400
     tgactttgtc aatgcagagg ttaaacaact tctagcgaat ggcataatac gaccgtcaaa      2460
     gtccccttac aataacccga tatgggtcgt cgacaaaaaa ggcatcgacg aagcgggtca      2520
     caaacaaaag cgtctggtta ttgattttag gaaactaaat cataagacaa ccgacgacaa      2580
     ataccctatc ccatccattt cgactatatt gtcaaatttg ggcgaggccc agtatttcac      2640
     tacgctggac ctcaagtcag ggtttcacca aatcgaattg gctgaaagag acaggaaaaa      2700
     gacagcgttc tctgtcaaca acgggaagta cgagttttgt agactcccct tcgggctgaa      2760
     aaatgcccca agtatttttc aacgagccat cgatgatgtg ctccgcgaac aaattggtag      2820
     gatatgttat gtttacgtcg acgacgtaat aattttctcc aagtccaaag aagaccacgt      2880
     cagagacatt gagtgggtct tgaaaaacct tagggacgca ggcatgcggg tgtctcaaga      2940
     aaaatccaag ttttttaaaa aaaacgtgga atacttggga tttacagtgt gcagaggcgg      3000
     gattcagtcc tcgcccgata aaattaaggc tattaaggac tttcccccac caaaaaccct      3060
     attcgctcta aggtcatttt taggtctagc acgctattat agctgcttca taacgggctt      3120
     cgccaacatc gcaaggcccc taacagatat cttgaaaggc gaaaatggca aagtaagtgc      3180
     caactactca agaaaggtga taatcgagtt gtcaccagag cagaatgaag ccttcgatag      3240
     gctaaaaaat atactggcct ccgaagatgt aatgttgtcc tacccaaatt acaagaagcc      3300
     ttttgacctc acaacagacg cgtctggctg cggactggga gcggtactgt ctcaagacgg      3360
     ccgcccgata acaatgatct cgcgaacact gcgaggtaac gaggtaaatt ttgccacaaa      3420
     tgagcgtgag cttctcgcca ttgtatgggc acttaagaac ctcagaaatt acctgtatgg      3480
     tgttaagaat cttaacattc atacagacca ccagccatta accttttcgg tatcggacaa      3540
     aaacccgaat gccaaaataa agcgttggaa agccttcatt gatgagcaca acgcaaacat      3600
     aatttataaa cccggaaaag agaacttggt agcagacgct ctgtctcgcc aaaatgtcaa      3660
     cgcactagag gactcagtag actcggatgt cgccaccatc cacagcgaag aatccctcac      3720
     gtataccatt gaagccacag acaaaccggt gaattgtttc cggaaccaaa ttattttgaa      3780
     agaaggaact attccccaac agaatacgct tattttgttt aagacaaaaa ctcgtcacat      3840
     actacatttt tctgatcaca gcacattatt gcaaagcatt aaagatgcag taaatgctga      3900
     cgtagtcaac gcaattcatt gcgagctacc catactggct ttcatccaac acggactggt      3960
     tatggcattc ccttccacca cctttagata ttgcaagaac ttggtaacag acattgtaaa      4020
     cccaatggaa cagagggaaa ttgcgacggc cgaacataat cgcgcgcaca gagcagccca      4080
     agaaaatgcg aaacaaatac ttagggacta cttttttcca aaaatgggtc acttaacatc      4140
     agaaatagct gcaaactgta gaatttgtac tatgagcaaa catgatcggc acccaagaaa      4200
     gcaggaatta ggaaaaaccc cgataccgtc gtttgccgga gaaatgttgc acatagatgt      4260
     ttactccact ggtggtaaat attttctaac ctgcatcgat aagttttcca agtttgcagt      4320
     agtacagcct atacggtctc gcgcaattgt ggatataaaa gctccacttt tgcaactttt      4380
     gaacatgttc cccgaaacaa aggcaattta ctgcgacaac gagaaatcct tgaactcgga      4440
     aactattaaa tcaatgctca gcaataactt tggcatcgtg atttcaaacg ccccaccctt      4500
     gcatagtctc tctaatggac aagtcgagcg gttccatggc actcttgggg atatagcacg      4560
     ctcttataag ttggaaacac gagtagagga cactgtcgaa aacattctct ttgcaactat      4620
     aaagtacaac aggtcaattc attcggtgac aaacgagaga cccatagacg taattcacgc      4680
     agcctccaaa gatagtacag tgcagatcaa agaaaaaatt gcatcagcac agcaaaagac      4740
     acttgaccaa atgaataaaa aaaggatcta taagtcgtat ttggtaggcg atcgggtttg      4800
     gataaaaaac aataagagac taggaaataa actatcaccc ctattcacag agggtatagt      4860
     ggaagcagat ctaggtacga cggttcttat taaaggaagg gtggtccata aggacaatct      4920
     taaataggct cttgacattt gaaaaatcat gacaactatt ttttaactaa ttacattttt      4980
     atttaggttg tatcttttca gtttaataat agcagccatg accttgaccg aagcgacatt      5040
     gagactcaac gactactccc acgcggacta catacctata gttgacggag acgtaacaat      5100
     ctgggactcg tacacttatt tgggacacac gacgaacttg acatcgttcg aaacttacat      5160
     cgacgagaca tggaaattaa tagacaaact acccaaagac catatgagac aggtactgaa      5220
     aacggacgta cagcacatag ccactttaat aacttccctg accgttcatc accgacaagc      5280
     acgtagcatt aacatgatag gtagtgccct taaggcaatt gcaggaaccc cagattttga      5340
     tgactgggaa caaataaaat tcaaacaaaa tcagttaata gaatccgaaa gtaagcagat      5400
     agagatcaac actaaattcc aagcaagact caatgacgtt tcaagggccc tcaatgcaat      5460
     tttgaaacca gatgcagagg tcgaacattt ttatgcaact attttggcaa agaatagaat      5520
     gataattaca aacctcgagg acttaatcct cactgttaca cttgcaaaaa taaatttaat      5580
     cagccccctt atactagaca gcatcgacat taaagaatta ttaaatgaac aactcaccaa      5640
     tactagtata accgaccttt tagaggtctc ccatataaaa gcttttcaaa attctgaatt      5700
     attgtacttt ctgatcaaat atcccaaacc tctgttaagc tgtaaaaaaa tagatatcct      5760
     tcctgtccag cataataaca taatattaga tctagaagag ggtaatacgg tggccgactg      5820
     cggaacaagg accttcgctg ttcgtgactg cgctgctact gtgagcacca ctttctgcag      5880
     aagactacaa aatacttcat gcgctcaaca actggtatct ggaactgtcg ctcactgtgc      5940
     cacacgcccc ggtcacctgg cgcccgtgat agtaatcgga gagggtattg cagtaataaa      6000
     caacgcgacc atgaatgtag tggacagcac tggacacaaa cagataatcg cgggaacttt      6060
     cctcgcgact tacgacgatt acgtctcact aaatggcacc cgttacgtga accaccgagg      6120
     catcctgaag aagaaacctg ctgtatccac gtcagccgtg gtcaacgtca cccttttcag      6180
     agaacatctg agcctcccat ttctacatga cctaaccatg aagaatctcc gacatatcgg      6240
     ggatcttaga acaggattat cttcacgatc gtatggcggc ttagcactca tcgccctatt      6300
     cctactcctc ctgggcacct ggaaattgta ccagtgcaga atgggaaaga agaaacccga      6360
     ggacgcgttt caaactagta ggggaggagt taacacgcgc aagcttaagt t               6411
//
ID   Gypsy-2_DSe-LTR repbase;    DNA;    INV; 253 BP.
XX
AC   AAKO01000708;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DSe_;
KW   Gypsy-2_DSe-I; Gypsy-2_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-253
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01000708; Positions  263937  264189.
XX
SQ   Sequence 253 BP; 68 A; 71 C; 57 G; 57 T; 0 other;
     tgctgacaac gctgctacgc cggatgccgt cgcgacaaag ttgcagccga aaccagaaac        60
     ccgcacgcgc aagctgcctg accgcccgtt gcagacgctg actcaacatt cagccgactt       120
     tccagcggca gcggcggctt cgtggtccgg cggagctggc cctaagtttc agtttttaat       180
     tttgttctcc aaaggttctt acataccaga aataaaaaca aataaagtta cttgctaaaa       240
     aagacttatt tca                                                          253
//
ID   Gypsy-2_DSer-I repbase;    DNA;    INV; 5078 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5078
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1978-1978 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4962
FT                 /product="Gypsy-2_DSer-I_1p"
FT                 /note="SAP motif, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDLNIADITVVQLKRWLELLNLPTKGTKVELFARLAK
FT                 VPIGIRGSAPEECVEMEKLGDTDVEIDGELEIAKETLGELREETAKARKIL
FT                 ANLNRQIGANVGGSQSKEDGGNERDENARIRHGSEKEGQLGVRVGDSGGRR
FT                 NNDANNNSSENFEQLPTRSFQNSQRGDGRGDGRGNGRGDVQRDGEIATDSF
FT                 ATPGFNMAREMLMDFGSKVCVRSWIDQWDSISALHRLTDMQRRILLIIKLK
FT                 GDSLQWLHAEAGRLAKPMDELIAELKLAFGGMESKAALRRKFEARVWSPDE
FT                 KFAMYFEEKCRLARDVAMEEDELVDGLVEGIPLPSLRMQAKMQCFDAPRKM
FT                 LRAFADIKLPARASIKAKASAAKAVSTNNETRCFNCNGKGHWKWECTKPKR
FT                 EPGSCYGCGAEDHRIAVCPQNKKEVENNYVRVFKIFCVKNTNQPIITECQI
FT                 DSGSPVSLIKRSCIPKNIKLEPLRENYFGLNKSLLKSYGKILCFVLKNEIK
FT                 IWFKLIVVASESMLCNIVLGRDFMKACKLEINLETLKMITIEECKTQVGRD
FT                 TNISLVNDNTKDPYDLDRVLGCENLESEILVDKNLDKGSFSTDLDQKGLGT
FT                 SLGENILGTNLGKNILGTNLGEDDLGTNLGKNILGTNLGENLLGTSLGENL
FT                 LGTNLGENLLGTSLGENILGTNLGENGLGTSLYENILGTNLGENGLDTSLG
FT                 ECLEDNNLGTDVIREQTLGTKGLGEEHRGVLDENFDREMMDINILENCEEE
FT                 KIYNIGEQINYKDCETFIKMLETHYVQIKRPEVPKIKCEMKIVLENSKPFS
FT                 CAPRRLSYSEKEALSKMLDEYIRDGIIQPSKSEYASPIVLVKKKSGELRLC
FT                 IDFRKLNKIMAKDNYPIPLIDDLLDSLVGKSVFTKLDLKNGYFHVFVNEES
FT                 VKYTSFTTPLGQFEFLRMPMGLKTAPQVFQRFVNDIFSDMIREKKVIIYMD
FT                 DILVASKSLEEHLDVVKEVFRRLVENKLELRMDKCKFLQDKVKYLGFLISN
FT                 DGIKADSKGLEAIQNFPIPGKVQAVQSFLGLCSYFRRFIKDFSILAKPLYD
FT                 LLRKDRLFRFEEEELNCFSLLKAKLMEAPVLALYDYRDDVELHCDASALGF
FT                 GAVLLQKKDDSKLHPIFYFSKRSTATEAKYHSFELETLAIIYALRRFRIYL
FT                 LGKRFKIVTDCNSLTLTLNKIELNPRIARWALELQEFDYELKHRAGRQMQH
FT                 VDALSRCNNIMIVEANTFETNLVICQSKDVKVQEIRKMLESNEHKLYEMRN
FT                 GVIYRKSNDNRLLFYVPNRMEEHVLYKYHDEMGHIGRDKMLEVIGKSYWFP
FT                 RMKDKVVEHIQNCLKCIAYAPKVGRGDGHLHSIPKGNKPFEIIHIDHYGPV
FT                 DSSRSKKHIFVVVDAFTKFVRLYTTKTTNTKEVINALTDYFRAYSIPRCIV
FT                 SDRGSCFTSSDFAEFMEKSNVKHIKIATGSPQANGQVERVNRSLGPMIAKL
FT                 TEPEKGLHWDRVMEKVEYAMNNTIHNSTKQCPSETLFGIRQKGEVLDNLKE
FT                 RLEDENELGNIRKTLEDVRKEAEEEQRKSQIKNEKYYNAKKKTATEYKEGD
FT                 YVMVKNFDSTVGASRKLIPKSKGPYVIEKVLKNDRYLLKDIDGFQLSRNPY
FT                 QGVWSANNIRHWLKL"
XX
SQ   Sequence 5078 BP; 1829 A; 692 C; 1219 G; 1338 T; 0 other;
     aacttcagaa gtgggatcag aatcaaaatt ttttctcatc atttggaaaa ataaaataaa        60
     ataatggatt tgaacatagc ggatataacg gttgtgcaat taaaacggtg gttggagctg       120
     ttaaatttgc ctacgaaggg cacaaaagtg gagctgttcg caaggctagc caaggtcccg       180
     attgggattc gaggcagtgc tccggaagag tgtgtggaga tggaaaagtt aggtgacacg       240
     gacgtggaaa tcgacggtga gctggagatc gccaaagaaa ctcttggaga attgcgcgag       300
     gaaactgcca aggcgagaaa aattctggca aatttgaatc gccagatcgg cgccaatgtc       360
     ggcggcagcc agagcaaaga agacggcggg aatgaaagag acgaaaatgc tcgaattcgg       420
     catggttccg agaaggaagg acagctaggc gttagagttg gcgacagtgg cgggcgacga       480
     aacaacgacg ccaacaacaa cagttctgag aactttgaac agctacctac cagaagtttc       540
     cagaactcgc aacgaggcga cggcagaggc gacggcagag gaaacggcag aggcgacgta       600
     cagcgagatg gcgaaatagc aacagacagt ttcgcaacac cgggttttaa catggccaga       660
     gaaatgctaa tggacttcgg cagcaaggtg tgtgtgcgat cgtggattga ccagtgggac       720
     agtatttcgg cccttcatag attaacggac atgcagcggc gaattctgtt gatcatcaag       780
     ctcaagggag attccttaca atggctgcat gctgaggccg gacggttggc gaagccaatg       840
     gacgagctca tcgcagaatt aaagctagct tttgggggca tggagtcaaa agcggcatta       900
     aggcgcaaat ttgaggcacg cgtctggtcg ccggacgaaa aatttgcgat gtacttcgag       960
     gaaaagtgca gattagctcg ggatgtggca atggaagagg atgagctggt ggatggactg      1020
     gtagagggca ttccattacc aagtcttcga atgcaggcta aaatgcaatg ttttgatgca      1080
     ccgaggaaaa tgttgcgagc gtttgcggac atcaagctgc cagcaagggc gtcaattaag      1140
     gcgaaggcgt cggcggcaaa ggcggtttcg acgaacaacg aaactcgatg cttcaactgc      1200
     aacggcaagg ggcactggaa gtgggagtgc accaagccaa agcgagagcc tggttcgtgt      1260
     tatggctgtg gcgcagagga tcaccgtatt gctgtatgtc cccagaataa gaaggaggtg      1320
     gaaaacaact atgtaagagt attcaaaatt ttttgtgtga aaaatacgaa ccagccgatt      1380
     attacagagt gccaaataga ttcgggaagc ccagtttcgc ttataaaacg ttcttgtata      1440
     ccgaaaaata ttaagttaga acctctaaga gaaaattatt tcggattaaa caaaagctta      1500
     ttgaaaagct atggtaaaat attatgcttt gtattaaaaa atgaaataaa gatttggttt      1560
     aaattaattg ttgtggctag cgaatctatg ctctgtaata ttgtgctggg gcgagatttt      1620
     atgaaagctt gtaaattaga aattaattta gaaaccttaa aaatgattac aatcgaggaa      1680
     tgtaaaaccc aagtcggtcg tgatacaaac attagcttag tgaatgacaa tactaaggac      1740
     ccttatgatt tggatagagt attaggttgc gaaaatttag aaagtgaaat tttagtggac      1800
     aaaaatttag ataaaggtag tttcagtaca gatttagatc aaaaaggttt aggtacaagt      1860
     ttaggtgaga atattttagg tacaaattta ggaaagaata ttttaggtac aaatttagga      1920
     gaagatgatt taggtacaaa tttaggaaag aatattttag gtacaaattt aggagagaat      1980
     cttttaggta caagtttagg agagaatctt ttaggtacaa atttaggaga gaatctttta      2040
     ggtacaagtt taggtgagaa cattttaggt acaaatttag gagaaaatgg tttaggtaca      2100
     agtttatatg aaaacatttt aggtacaaat ttaggagaaa atggtttaga tacaagctta      2160
     ggtgaatgtt tagaagataa taatttaggt acagatgtta tacgggaaca aactttaggt      2220
     acaaaagggt taggtgagga acatcgaggt gtgttagacg aaaattttga tagggaaatg      2280
     atggatataa acattttaga aaactgtgag gaagaaaaaa tttataatat tggtgagcaa      2340
     ataaactata aggattgtga aacgtttatc aagatgttag agacgcatta tgttcaaatc      2400
     aagcgaccgg aagttccgaa aataaaatgc gaaatgaaaa tagtgttaga aaactcaaaa      2460
     ccatttagct gcgcaccaag aagactgtca tatagtgaaa aggaagcatt atcaaaaatg      2520
     ttagacgaat atattagaga tgggattatt caacctagta aatcggagta tgcttctcct      2580
     atcgtattag tgaagaagaa gtcgggtgaa cttagacttt gtatagattt tagaaaattg      2640
     aacaaaataa tggctaagga caattatccg ataccattaa ttgatgacct tttggatagc      2700
     ttagtgggaa aatcagtatt tacaaaattg gatcttaaga atggttactt tcatgtattt      2760
     gtcaacgaag agtcagtgaa atatacgtcg tttaccaccc cgttagggca gtttgagttt      2820
     ctacggatgc ccatgggtct taaaacagcc ccacaggtat tccagagatt cgtcaatgac      2880
     atattttcgg acatgataag agaaaagaag gtaatcatat acatggacga tattttagtt      2940
     gcaagcaaaa gtttagaaga acatttagat gttgtaaaag aagtatttag aaggttagta      3000
     gaaaacaagt tagaattgag aatggataaa tgcaaatttt tacaagacaa ggtcaaatat      3060
     ttaggttttc taatttcaaa cgatgggatt aaggctgata gcaaggggtt agaagctata      3120
     caaaattttc cgatcccagg caaggtgcaa gcagttcaaa gctttttggg tctttgttca      3180
     tattttcgac gattcattaa ggatttttct atattagcga aaccattata tgatttatta      3240
     agaaaggata ggctttttag gtttgaagaa gaagagttga attgtttttc gcttttaaag      3300
     gcaaagttaa tggaagcgcc agtgttagct ttatatgatt acagagatga tgtcgaactt      3360
     cattgtgatg caagtgcctt aggatttggg gctgtgcttc ttcagaaaaa agatgacagc      3420
     aagttacatc ctattttcta tttttcgaaa agatcaactg caacggaagc gaagtatcac      3480
     agttttgaat tggagacttt agctataata tacgcgttaa gaagatttag aatatatttg      3540
     ctaggcaaac gatttaaaat tgtaacagac tgtaactctc taactttaac cctcaataag      3600
     attgagttga acccaagaat agcaaggtgg gctctagagc tacaggaatt cgattatgaa      3660
     ttaaaacaca gagcaggcag acaaatgcaa catgtagatg cattgagtag atgcaacaat      3720
     attatgatag tggaggcaaa tacattcgaa acaaatttag taatttgtca atcaaaagat      3780
     gtaaaggttc aggaaattag gaaaatgtta gaaagtaacg agcataagtt atatgaaatg      3840
     agaaatggtg tgatctatag gaaaagcaac gacaacagat tattgtttta cgtaccgaat      3900
     cgaatggagg aacatgtgct atacaagtat catgatgaaa tgggtcatat tgggagagat      3960
     aaaatgttag aagttattgg aaagagctat tggtttccac gcatgaaaga taaagtcgtg      4020
     gaacacattc aaaattgctt aaagtgtata gcgtatgctc cgaaggtagg tagaggagat      4080
     ggacatttac atagcatacc aaaaggcaac aaaccttttg agatcattca tatagatcat      4140
     tatgggccgg tagatagtag cagatcaaaa aagcatatat ttgtggtcgt agatgcattt      4200
     acaaagtttg ttaggttgta cacaacaaaa acgacaaata caaaagaggt gataaatgca      4260
     ttaacagact attttcgagc ttatagtata cctagatgca tagtatcaga tcggggcagt      4320
     tgttttacat cgtctgattt tgcagagttt atggaaaaaa gtaatgtgaa gcacataaaa      4380
     atagcgacgg gctcgccgca ggctaatggc caagttgaac gagtcaatag aagcctagga      4440
     cctatgatag caaaattgac agaaccggaa aagggattac attgggatag agttatggaa      4500
     aaagtagagt atgcaatgaa taatacaatt cataatagta ctaagcagtg tcctagtgaa      4560
     acattatttg ggataagaca gaaaggagaa gttttggata atctaaaaga aagattagaa      4620
     gacgaaaatg agttaggaaa tattagaaaa accttagaag atgttagaaa agaagcagaa      4680
     gaggaacaaa ggaaatctca aataaagaat gaaaaatatt ataatgcaaa aaagaaaact      4740
     gctacagaat ataaagaagg agattatgtt atggtaaaga attttgatag cactgtagga      4800
     gcttcgagaa aactcattcc aaaaagtaaa ggtccttatg taattgaaaa agttttaaaa      4860
     aatgacagat atttgcttaa agatattgat gggtttcagt tgtctcgcaa tccatatcaa      4920
     ggtgtttgga gtgcaaataa tataagacat tggttaaaac tgtaattaag atagtaaact      4980
     aagaattgaa ttgtaaatga aaatcaaatt gtaaatagta gttaagttat aattctaagc      5040
     agagatagag ggctatctca aagtcaggac ggccgagt                              5078
//
ID   Gypsy-2_DSer-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-299
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1990-1990 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 299 BP; 121 A; 36 C; 79 G; 63 T; 0 other;
     tgtagcaggc cagttaagat aagtatgctc tggccactct aattgagatg ttacgctctc        60
     tcaaaagaga acatgagaga gcgactggct aagaatgggg gttgattgag tgtttgctga       120
     gagcggcaga tcacttggtg agaagatcgg aacgagagta gacgtgtaaa gacaaaaagt       180
     gtaaagacaa gagtgaagaa tagataaaac caagtataaa agtttaggat taaataataa       240
     agaaatatta gtaagagaag aaaagaacaa gaagtgttta gaactaaaag acggccaca        299
//
ID   Gypsy-2_DSim-I repbase;    DNA;    INV; 4418 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DSim_;
KW   Gypsy-2_DSim-LTR; Gypsy-2_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4418
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1498-1498 (2012).
XX
RN   [3]
RP   1-4418
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..4143
FT                 /product="Gypsy-2_DSim-I_1p"
FT                 /translation="MEMQNKNLIELVKAIQSTASETPNKNTVVLPKFNADL
FT                 DGADATAWCSTANIILAESTIKGSALVMALSVAMEGSASQWFAQICYPGIT
FT                 WAEFKELFVQRFASVETPAAMFLAMLAGCPTDGECLSNYASRMMTSLITKW
FT                 REMDVEEIAVSVTLAKLAHVDSRLQRLTFTSNVRTRSELQTELKAFTFNKR
FT                 KKTPQEEMPPADIKRQRLSTMKCHFCGKLGHKMIECRAKQQQQFSTSAKDS
FT                 NDRNPFGHRQKSDVTCFNCGERGHISTHCSKPKKDKGTHQVKRLELCEVVE
FT                 PKGEMIHQGETFSTTFDSGAECSLIKQKLSSKLVGKRINNVVMLKGIGNGS
FT                 ICSTLQILSNVIINNHCIEILFHVLNDIYLKNDIIIGREVLFPEFNVVISP
FT                 GKFEIVRAKTVNYCSNDEKFSELNTDLVGEDRDKLKSLVEKYSKSFIAGIP
FT                 LTRVSSGEMKIKLVDPKRTVQRRPYRLSPNERELVRDKINELLECNIIKPS
FT                 CSPFASPIMLVNKKDGSHRLCVDYRELNSNTVSDRYPLPLISDQIARLHGA
FT                 KYFSCLDMASGYYQIPLHPDSVECTAFVTPDGQYEFLAMPFGLRNAPSVFQ
FT                 RTVMQALGDLANKFVVVYMDDVMVAASTKSEALERLQITLDCLTKAGFSFN
FT                 INKCSFLKSKVQYLGYEVSAGEIRPNSLKIAALTTLPPPQSVPALRQFIGL
FT                 ASYFRQFMQGFSCFMKPLYLLTSERNEFIWKPEHEEIRQKVISILTQKPVL
FT                 VIFDPQHPIELHTDASSRGYGAILLHKINNKSHVVEYFSKAASPAESRYHS
FT                 YELETLAVVLAMKHFRHYLLGRNFVVFTDCNSLKASRTKQDLSPRVQRWWS
FT                 YLQSFTFDLQYREGKRMAHVDFFSRNVPSADLSTTTPKVLEKRINLAEISS
FT                 NWLLAEQRQDLEIVNIVNKLKDNSLAEDVAKTYELRGGILYRKIQRNGRTR
FT                 SLSIVPKVFRWSVINQIHESIMHLGWEKTLDKAYDYYWFDNMSKYIRKFVE
FT                 NCITCKMSKTSSGKIQASLHPIPKVNIPWHTVHIDITGKLSGKSDQKEYII
FT                 VQVDAFTKFVYLTHTHKIDAENCVSAVTSAISLFGVPNRIIADQGRCFASS
FT                 RFSDFCEQQKINLHLIATGASRANGQVERIMSTLKNLLTAVETSSRSWQDA
FT                 LGEVQLALNCTVSRVTKASPLELFIGKVARPLGLVPPCDEVDEVDLDEVRA
FT                 RAVQSISAAAAYNKAQFDKNKAKVDRCQVGDFVLLKNEERHQTKLSPKFRG
FT                 PFQITELLDGDRYMLRSLTNNRKYKYAHDDIRKMPNWQVPAEFENCNEAVE
FT                 RDSSEIVEAVERDSSEIVEAVERDSSEIVEAVERDSSEIVEAVERDSMDA"
XX
SQ   Sequence 4418 BP; 1458 A; 740 C; 965 G; 1254 T; 1 other;
     tcagaagtgg gatctggctc gctgcctaac accatagatg ggccgtggcg cgttttaatg        60
     gaaatgcaaa ataaaaactt gatcgaactt gttaaagcaa tacaatcaac ggcatccgaa       120
     acaccaaaca aaaatactgt ggtgttacct aaatttaacg cggaccttga tggcgcagac       180
     gcaacggcgt ggtgctctac ggcaaatatt attttggctg aatcaactat aaaaggcagc       240
     gcgttagtta tggctttaag tgtagcgatg gaaggaagcg cgtcgcagtg gtttgctcaa       300
     atatgctatc cgggaataac ttgggccgag tttaaggaac ttttcgtgca acgttttgct       360
     agtgtggaaa ctccagcggc tatgttttta gcaatgctag caggttgtcc aactgacggc       420
     gaatgcctct ccaattatgc tagtcgcatg atgacgtcgc ttattacgaa gtggcgtgag       480
     atggatgtgg aggaaatagc tgtttctgtg acgcttgcta agttggctca tgtagacagc       540
     aggctgcaac gattaacatt tacttcaaat gtgcgcacaa gaagtgaatt acaaactgag       600
     cttaaagcat ttacgtttaa taaacgaaag aaaactccgc aagaagaaat gcctccagct       660
     gacataaagc gccagcgact ttcaacaatg aaatgccatt tctgtggaaa actcggtcac       720
     aagatgatcg aatgtagagc taaacagcag cagcaatttt cgactagtgc caaggacagc       780
     aacgacagga acccttttgg tcaccgtcaa aaatcggatg tgacttgttt taattgtggc       840
     gagcgcggtc atatttcaac acactgcagc aagcccaaaa aggacaaagg cacgcatcaa       900
     gtgaaaaggt tggaactatg cgaggttgtc gaacccaagg gagagatgat tcatcaaggc       960
     gagacatttt caacaacgtt tgactctgga gcggaatgtt ctttaattaa acaaaagcta      1020
     agtagcaaat tagttggtaa aagaattaac aatgtagtga tgttgaaagg tattggcaat      1080
     ggtagtattt gtagcacatt gcagatactt agtaacgtaa taattaacaa tcattgtatc      1140
     gaaatattgt ttcatgtctt gaatgacata tatttgaaaa atgacataat tattggtcgt      1200
     gaagtattgt ttccagaatt taatgttgta atatcacctg gtaaatttga aattgtcaga      1260
     gcaaaaactg taaactattg ttctaatgat gagaaatttt ctgagttaaa tactgatctt      1320
     gttggtgaag acagagataa actaaaaagc ttagtggaaa aatactcaaa atcttttatt      1380
     gccggaattc cattgaccag agttagctcg ggggaaatga aaattaaatt agttgaccca      1440
     aaaagaactg ttcaaagacg accatataga cttagcccaa atgaaaggga attagtgcga      1500
     gacaaaatta atgaattatt agagtgtaac ataataaaac caagctgttc accctttgca      1560
     agtcccataa tgttagtcaa caaaaaggac ggctctcatc gtttgtgtgt tgattataga      1620
     gaattaaatt ctaatacggt atcagacaga taccccttgc cccttatatc agaccaaata      1680
     gcgagacttc atggagcgaa atatttttca tgtctggaca tggcaagtgg atattatcaa      1740
     attccattac acccagattc agtagagtgt acagcttttg tcaccccaga tggacaatat      1800
     gaattcttgg caatgccgtt tgggctcaga aatgctccat ctgttttcca gcgtacagtg      1860
     atgcaagctc tcggagacct tgcaaataaa tttgtagtcg tttatatgga cgatgtaatg      1920
     gtggctgctt caacgaaaag tgaagcttta gaaaggttgc agattactct tgattgtctc      1980
     acaaaagctg gattttcatt caatataaac aaatgttctt ttttaaagtc aaaggttcaa      2040
     tatttgggat acgaagtgag tgcaggtgaa atccggccaa attcgcttaa aattgcagcg      2100
     ttaactactt taccacctcc tcagtcggtc cctgctttgc gacaatttat aggattagcg      2160
     tcttactttc gacaatttat gcaaggattt tcttgtttta tgaagccgtt atatcttttg      2220
     acttcagaaa ggaatgaatt tatttggaag ccagagcatg aagaaataag acaaaaggtt      2280
     atttctattc ttacccagaa gccagtttta gtaatttttg atccgcagca tcccatcgag      2340
     ttgcatacag atgcaagttc tcgtggatac ggtgccatct tattacacaa aattaacaat      2400
     aagtctcatg tcgttgaata ttttagtaag gcagcttctc cggctgagtc acgttaccac      2460
     tcatatgaac tggagactct tgctgttgtt ttagcaatga aacattttcg ccattattta      2520
     ctgggtagaa actttgttgt cttcactgac tgtaactctc ttaaggcctc aaggacaaaa      2580
     caagacctat ctcctagagt acagagatgg tggtcttatt tacaatcatt tacatttgat      2640
     ttacaatata gggaaggcaa acgaatggcg catgttgact tcttttcaag aaatgtgcct      2700
     tcagctgatt tgagtactac aactccaaaa gttcttgaaa aacgaattaa tttggctgaa      2760
     atatcaagta attggctttt ggctgaacag cgccaagatc tcgaaatagt aaatattgta      2820
     aataaattga aagacaattc cctggctgag gacgttgcaa aaacttatga gttaagagga      2880
     ggaatattat atcgaaaaat tcagcgaaat ggtagaactc gatcgttatc aattgttccc      2940
     aaggtattta gatggtctgt tataaaccaa attcatgagt caatcatgca cttgggatgg      3000
     gagaagacgt tagacaaggc ctatgactat tactggttcg ataacatgtc taaatatatt      3060
     cgaaaattcg ttgaaaactg cattacgtgt aaaatgtcaa agacctcctc gggcaaaatt      3120
     caagctagcc ttcatccaat accaaaagta aatatccctt ggcacactgt tcacatcgac      3180
     ataactggaa agttaagcgg caagtctgat cagaaagagt atatcatcgt tcaagtggat      3240
     gcctttacta aatttgttta tttaactcac acgcataaaa ttgacgcaga gaattgcgta      3300
     agtgcagtga cgtcggctat atctctgttt ggagtaccaa atcgcattat tgcagatcag      3360
     ggtaggtgtt ttgccagcag tagatttagt gatttctgtg agcaacagaa aataaatttg      3420
     cacttgattg cgactggtgc aagtagagca aatggtcaag tagaacgcat tatgagcacc      3480
     ttaaaaaact tactaaccgc agtcgagact agcagtcgct cttggcaaga cgcattaggt      3540
     gaggttcagt tagcattaaa ctgtacggtt agtcgagtga caaaggcaag ccctttagaa      3600
     ttgtttattg gcaaagttgc tcggccgttg gggttggttc caccttgcga tgaggtagat      3660
     gaggttgatc tagatgaagt aagagcgcgt gcagttcaga gtatttcagc tgcagcagca      3720
     tataacaagg cgcaatttga taaaaacaaa gctaaagttg atagatgtca agtcggagat      3780
     tttgtattgt taaagaatga agagaggcat caaacaaaat taagcccgaa gttcagaggg      3840
     ccttttcaaa taactgaatt gttagacgga gacaggtata tgctcaggtc actgacaaat      3900
     aatagaaaat ataaatatgc tcacgatgac ataaggaaaa tgccaaattg gcaagtacca      3960
     gcagaatttg aaaattgtaa cgaagctgtt gaaagagaca gtagcgaaat tgttgaagct      4020
     gttgaaagag acagtagcga aattgttgaa gctgttgaaa gagacagtag cgaaattgtt      4080
     gaagctgttg aaagagacag tagcgaaatt gttgaagctg ttgaaagaga cagtatggat      4140
     gcctgaaggg ctaataatga aatttttaag tataatgtaa gcacaagtgc aaggcaaatg      4200
     tcttgatcat ggcgtgttgc gcattacata tgaataagaa gaaaatgaat tatgttaaag      4260
     aaaagaaatt tttattggaa atttaaattt ggaaatttga tttgtcaatt ggctaatatt      4320
     tgtkttaaaa tgatgtaaaa atagttttac aataaaatta tagagaacga atcattttgg      4380
     taatatttca cgaggacgtg taaaggtcag gatggccg                              4418
//
ID   Gypsy-2_DSim-LTR repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DSim_;
KW   Gypsy-2_DSim-LTR; Gypsy-2_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-360
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1499-1499 (2012).
XX
RN   [3]
RP   1-360
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-AUG-2018).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 360 BP; 92 A; 61 C; 90 G; 117 T; 0 other;
     tgtcggcgca tacttttgta agctggtgga tgtgctagaa tatttcacaa gaataataat        60
     ttcatcatat tgtattatgt gttagaatat tccagaagta cagtaatttc atcatttcgg       120
     gaaatcattg gtatttcgtc atattacatt attgcatact gcgttgctat tggtcggctg       180
     tatttttgta gctttggcat ctcccgttac agcgcggcgg cagcgtgtgg tcgctgtcgc       240
     cgagtgtggt tcgaaggata gcacggagaa gaagtgagtg acacaaatta attgtgtgta       300
     gatcttcggt gcgttcgaaa ctcgctgcgc gaaatggaaa ataataattg tgctccgaca       360
//
ID   Gypsy-2_DTa-I repbase;    DNA;    INV; 5131 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.08, Created)
DT   29-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DTa_;
KW   Gypsy-2_DTa-LTR; Gypsy-2_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5131
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1612-1612 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2192-2698] - Reverse transcriptase
CC   Positions [4201-4680] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..1125
FT                 /product="Gypsy-2_DTa-I_1p"
FT                 /translation="MRYSDIIKKTRPELKAFLERENVFFQEDATIHQLRAA
FT                 AKTIMDNLEKPSLEHVELEKLDLEELSLEGASCGAAGVSGADGDACVGGEL
FT                 EREQKGDGEEVLESSNMAAAHVQRCDRIAACDEILEVTNVASADMHRDLMA
FT                 EAILESSDTAALDGQRRARVSASVEAELQHLQQIEKLYAARKRVDDLEKEL
FT                 NRNKLTQETDIDISDLDALIQPFSGDNGYPVLRWIDDFSNIMDIYGVPEKK
FT                 RFIFAKRLLTGSARAFMNEAAALNWPRLRAELIAVFDLKLTAFDVFKQLEA
FT                 RKKLPGESALHYFLLCAALGDRWIWRKRISSGLSSKDWEISPERRLQWLTA
FT                 LLCTSFVRKL"
FT   CDS           2021..3295
FT                 /product="Gypsy-2_DTa-I_3p"
FT                 /translation="MCEQVVQTHYVSNQYDYNTAPRYRMSIKLTDTTPFYC
FT                 SPRRLSYFEREKVAEIIDDLLKKNVKRPSASPYASPLVLVKKKSGEIRMCV
FT                 DYRGLNKRVVKDNFPLPLIEDCLEYLEGKCCFSVIDFKSGFHQIEVEEKSV
FT                 PYTAFVTPQGQYEYLRMPFGLKNGPAVFQRFISETFSDFIRKKSLVIYMDD
FT                 IVIATKTVCEHLEILGKLLDRISEYNLEINKKKCVFLKKECEFLGYSISKY
FT                 GIKPSESHLEALRNFPVPQNVHTLHSCLGFFSYFRRFVLSFARIAKPLTEL
FT                 LKKGGPFPLNEEQLSAFNELRNALANPPVLAIFSPGRETELHTDASSHGFG
FT                 AILLQRQDDGKMHPISFYSGKTTAAESRYHSFELETLAIINALRRFRVYLE
FT                 HRPFKIITDCNSLVQTLSRKSINPRIDQMVP"
FT   CDS           3325..5085
FT                 /product="Gypsy-2_DTa-I_2p"
FT                 /translation="MHRPGVNMAHVDALSRQIEVVKLLKSSEFDNDEDLLE
FT                 NLVDNRRDHCVENPRDKLLENYRDRRTVENRRDDPLETRRENLDGSSGDSI
FT                 IESLLEIRRDTPVDTMLVDSYSKDPLERIRALLENLHEEEEEDKANGNYMD
FT                 GSKMAWGNDKSESREDTFLKSIPIVGVVGATPDDVDLILQTEQMRDQNIVR
FT                 LREKLERGHLRSFELRDGLVCRKIGDEAYCLYVPVCMEEQLIRKSHEKLGH
FT                 LAADKCVKDLRRTYWFPEMRTKVEHFIRNCLSCILHSVPRSIHDRTLHSIP
FT                 KPCIPFHTLHIDHLGPLPSIISKRKHLLVVIDAFTKFIKLFPVNTTSTREA
FT                 RDALSKYFDFYSRPQRIISDRGTCFTSLEFTTFCQERDIEHIKVATGAPQA
FT                 NGQVERVNRVLTPMLGKLAEPLSQSDWYKLLNKVEYAINNAVHSSTQVPPS
FT                 VLLFGVVQKGPIVDELSEYLENKFNNEPRDLVSIREHAAVNIQNSQKRNEE
FT                 LYSRKHRAPREYQIGDYVAIKNVDTTAGTNKKFAPKYRGPYKISRVFDNDR
FT                 YEVVDIDDCQLTQMPFRGVLEPARLKPWISNVNETVALCL"
XX
SQ   Sequence 5131 BP; 1602 A; 908 C; 1227 G; 1394 T; 0 other;
     gaaaaataaa aagtttacat accaggtgtg gggtaaaagg cccgtacaaa atataactca        60
     ttggtcatga gatatagtga cataataaag aagacgagac ctgagctgaa agcttttctg       120
     gagcgggaga acgtattttt ccaagaagac gccaccatcc atcaactacg cgcggcggcg       180
     aaaaccataa tggacaacct ggagaagcca agcctggagc atgtggaact tgagaagctt       240
     gacctagagg agctgagctt ggagggggca tcgtgtggag ctgcgggggt ttctggagca       300
     gacggcgacg cttgtgttgg tggcgaattg gaacgtgagc agaaaggaga cggcgaagaa       360
     gttctggaaa gttctaatat ggcggctgca cacgtgcagc gctgcgatcg aattgctgct       420
     tgtgatgaaa ttctcgaagt tacgaatgtt gcaagtgcgg acatgcatcg tgatttgatg       480
     gcggaggcaa ttctggaaag ttccgatacg gcggcgttgg acgggcagcg tcgtgcacga       540
     gtgtcggcaa gcgtcgaggc agaactacaa cacttacagc aaatcgagaa gctgtacgct       600
     gcgcgtaaac gtgtggatga tttggaaaaa gagttgaacc gaaataaatt aactcaagaa       660
     accgacatcg atatcagtga tctggacgcc ctaattcaac cgttttctgg ggacaacggg       720
     taccctgtat tacgttggat cgacgacttt tccaatatta tggatatata tggggtgcct       780
     gagaaaaaac gttttatttt cgctaaacgt ttgttgaccg gatctgcaag agcatttatg       840
     aacgaagcag cagctctaaa ttggccgagg ctgcgagcag aactaatagc cgtttttgac       900
     ctcaagctca ctgcattcga tgtgttcaag cagctagaag ccaggaagaa attacctgga       960
     gaaagtgccc tgcactattt tttgctatgt gcggcattgg gcgacaggtg gatctggcgc      1020
     aagaggatat cgtccggttt atcgtcgaag gattgggaga tcagtccgga aaggcgtctg      1080
     caatggctta ctgcacttct ttgcacgagc ttcgtcagaa aattatgatt tatgacaaac      1140
     tgaagaaaat gccggcgcag cagacttcta agccggagga gcagactaaa ctggtgaaac      1200
     tccaagtacg tgcgcccgtt cctgaaggca ttcgttgcta caattgcagg caaatggggc      1260
     acatggctag agagtgcgga cgacccaaga gaccggatgg ggcctgtttc aagtgctttg      1320
     ggctggacca taaataccag caatgcccca agcgagaggt gtcaacaagg acggcgctga      1380
     tgcaagatga agaggaatct ggatcggaag agttgacagc ggttcaacca atcaaaattt      1440
     gaggattgcg cggtgaaaag ggaaaatata tttctactgt aagtttattt gatactggta      1500
     gtccggtaag ctttattcgt aagtctttaa ttccaaaaat attgtttagt ttaaaaaaat      1560
     cgaagtacgc tggtttagga ggaccgcgac tatcaatatg gggcattgtg aaggcctctg      1620
     ttaagtttta cgcaaagaca tattttcttt tcttaaatat aatcgatgat aaaatattac      1680
     cataccctgt actgatagga agagactcac ttaaaataat gaatgttcaa ttagttcata      1740
     aggctaagta caagtcatcc ttaaaattaa taaatattaa tgctggtaaa tcaaaagact      1800
     ctcccctttt caccgcgaag ataaaaccag cgcataactt taacaaaaat actaaagtaa      1860
     attctaattt aagccataat cccaagttag gtttagataa cgaaagtttt ggagaaattc      1920
     taatgctgac agggatgcgc aaggattctt gaacgctata gaaccatttc tagacgattc      1980
     ttttgaaata ggaactgagt ttgggttaga ttcggcaaag atgtgtgaac aagttgttca      2040
     aacgcattat gttagtaacc aatacgatta taacacagca cctagatatc ggatgtccat      2100
     taaattaacc gataccactc cgttttactg ttctccgaga cgtctgtctt actttgagag      2160
     agagaaagtt gcggagatca ttgatgattt acttaagaaa aacgtaaaac gtccgagcgc      2220
     ttcaccttat gcgtcacctt tggtccttgt gaagaaaaag tctggtgaaa ttcgaatgtg      2280
     cgttgactac cgaggtttaa acaagcgtgt cgttaaagat aattttcctt tgccgcttat      2340
     tgaagattgc ctggagtatt tggaaggaaa atgttgtttc tctgtgattg attttaaaag      2400
     cggatttcat caaatagagg tcgaagaaaa atctgtgccg tatacggcgt ttgttacccc      2460
     tcaaggacag tatgagtatc tgaggatgcc ttttggattg aagaatggtc ctgcagtgtt      2520
     ccaacgattt atttcggaaa cgttttcaga ctttataaga aagaagagcc tagtaattta      2580
     tatggacgat atagttatag cgacaaagac agtatgtgag cacttagaga ttttaggaaa      2640
     acttttggat cgtattagtg aatataattt agagataaat aagaagaaat gtgtattttt      2700
     gaagaaagaa tgtgagttcc tggggtacag tattagtaaa tatggtatta aacctagtga      2760
     atcgcatttg gaagctttga gaaattttcc tgtgccccaa aatgttcata cccttcactc      2820
     gtgtttagga ttcttttcgt attttagacg tttcgtccta tcatttgcgc gaatagctaa      2880
     acccttgaca gagttattga agaaaggagg tccttttcca ctcaatgaag agcaattaag      2940
     tgcatttaat gaattgagga atgctttggc taatccacct gtcttagcca tttttagtcc      3000
     tggtcgagaa actgagctcc atacagatgc cagttcacat gggtttggtg ctatattatt      3060
     gcagcgacaa gatgatggaa aaatgcatcc tatttctttt tattcaggta aaaccactgc      3120
     agcagaatca cgataccata gttttgagtt ggaaacactt gcaataataa atgcattgcg      3180
     ccgttttaga gtataccttg agcacaggcc gtttaaaata attacggact gcaattcgtt      3240
     ggtgcagaca cttagtagaa aatctattaa ccctaggatt gaccagatgg tcccttagag      3300
     ttagagaatt acgattactc aattatgcat agacccggtg tgaatatggc ccatgttgat      3360
     gccttgagca gacaaataga agttgtgaag ctgttaaaga gtagcgagtt cgacaatgat      3420
     gaagacctat tagaaaacct tgtagataac cgtagagacc actgtgtaga gaaccctaga      3480
     gacaaacttt tagagaatta tagagaccgt agaaccgtag agaaccgtag agacgatcct      3540
     ttagaaaccc gtagagaaaa ccttgatggg agcagtggag atagcattat tgaaagcctt      3600
     ttagagatcc gtagagacac tcctgtagat actatgttgg ttgatagcta tagtaaagac      3660
     cccttggaga gaatacgtgc cttgttagag aatcttcatg aggaagaaga ggaagataaa      3720
     gctaatggga attacatgga cggtagtaaa atggcctggg gaaatgataa atcggagtct      3780
     cgtgaggaca cttttctaaa atccatacct atagtaggag tcgtaggagc aacacctgac      3840
     gacgtagacc tgattctaca aactgagcaa atgagagatc aaaatatagt tcgattgaga      3900
     gagaaactag agaggggaca cttgcgttcc tttgagttga gggatggact agtatgtaga      3960
     aagattggcg acgaggctta ttgtttgtat gtgcctgtct gtatggaaga acagcttatt      4020
     aggaaatctc atgaaaaact aggacacttg gcagcggata agtgcgttaa ggatttaaga      4080
     agaacctatt ggtttccaga aatgagaact aaagttgagc attttattag aaattgcctg      4140
     tcgtgcattt tgcattcagt gccgagatcc attcatgata gaaccttgca tagtattcca      4200
     aaaccttgta tcccgtttca tacactccat atagatcatt tgggcccctt accgagtata      4260
     atttcaaaga gaaaacatct gctagtggtt attgatgctt ttaccaagtt tatcaaactc      4320
     tttcctgtaa atacaactag tacaagagaa gcgagagacg cgttgagtaa atactttgat      4380
     ttttatagtc gaccccaaag aatcatatcg gaccgcggta cttgttttac gtccctcgag      4440
     ttcaccacct tttgtcaaga acgggacatt gagcacataa aagtagctac gggagcacct      4500
     caagctaatg gccaggtaga gcgtgtaaac cgcgtgttaa cgcccatgtt agggaaatta      4560
     gcagaacctc ttagtcagtc cgattggtat aagctactta ataaagttga atacgcaatt      4620
     aataacgcag tgcatagtag cacccaggta ccgccaagtg ttttgttgtt tggagtagta      4680
     caaaagggac ctatagtgga tgagctttct gaatacttgg agaataaatt caataatgaa      4740
     cctagagatc tggtcagcat ccgtgagcac gcggctgtca atattcagaa ttcccaaaag      4800
     agaaacgaag agttatatag tagaaagcat agagctcctc gagaatatca aataggcgat      4860
     tatgtggcta taaaaaatgt cgataccact gcaggaacaa ataagaagtt tgctcctaag      4920
     taccgtggac cttataagat aagtcgtgtg tttgataatg atagatacga ggtcgttgat      4980
     attgatgatt gccagttaac gcaaatgcca tttagaggtg ttttagaacc agctagactt      5040
     aaaccttgga taagtaatgt taatgaaact gttgcccttt gtttgtaaag atcgtggtcg      5100
     atctgtagtc aggtcggccg aatgtaaata g                                     5131
//
ID   Gypsy-2_DTa-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.08, Created)
DT   29-JUL-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DTa_;
KW   Gypsy-2_DTa-I; Gypsy-2_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-161
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1613-1613 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 161 BP; 67 A; 20 C; 37 G; 37 T; 0 other;
     tgtaaatatt gtattaatta gataaggtaa cactaagaaa taacacatgt aactatcgat        60
     aagaagatga atcgattgat cgagtgtgta cgatcgatgt gagtgcgatc actaacgaga       120
     gagaaccaag cagagtggac gtgaaatcag aataaaagac a                           161
//
ID   Gypsy-2_DVir-I repbase;    DNA;    INV; 7177 BP.
XX
AC   scaffold_7526;
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   07-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DVir_;
KW   Gypsy-2_DVir-LTR; Gypsy-2_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-7177
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (07-MAR-2011).
XX
DR   Genome; scaffold_7526; Positions    7811     635.
XX
CC   Positions [4653-5129] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3036..5504
FT                 /product="Gypsy-2_DVir-I_1p"
FT                 /translation="MIKLGVIEEAPYSAWSSPAILIVKPGKVRFCLDCRKV
FT                 NEVTSKDAYPIPNLDGLISRLPPVHCVSKIDLKDAFWQICLDESSRAKTAF
FT                 TIPNRPLYQFKRMPFGLCNAPQTMSRLMDQVIPYDMKGHVMVYLDDLLVLS
FT                 QSFDEHLIHLAEIATRLRRAGLTINIRKSNFCLTKVEYLGYIVGEGTLQPN
FT                 PAKVQAVADFPVPSTKRQLRRFLGMTGWYQRFIPQYSSIIFHLTELLKGTS
FT                 FAWNDNAQISFEEIKRKLSSAPFLINANYEKPFIVQCDASMHGVGGLLAQC
FT                 DESGIERPIAYMSKKLNKAQRNYSVTELECLAVVLAVRKFRMYIEGHDFKV
FT                 VTDHATLRWLMNQKDLSGRLARWSFKLQGYNFSIEHRKGSENVVADTLSRA
FT                 FEPADEVAAVDLEVYPEIDLSSEAFRSNEYCRLKNNIIRSNLPDFRVVDDY
FT                 IYFRNEPSASSVDENMEGWKLFVPSELRLNVMKAAHDQPTSAHCGMAKCLE
FT                 CIRRHLYWPNMVVDVREYIRHCEFCQTSKVPSRCLKPTMGNQVVSERPFQR
FT                 LYVDFVGPYPPSKKRNIGIFVILDHYSKFTFLKPIKRLNAKVVVDILQEDI
FT                 FDCFGVPEIIVSDNGTQFKSLEFSSLLSKYGIQHMCTGVYSPQANAVERVN
FT                 RSINAALRTYIRSDQSLWDVYISSINSSLRNTIHQSIGISPYFVVFGQNMI
FT                 KHGNDYKLLKSLNMLNEGQLKLDRADEFPLIRSNIQKHMDKAYEKNLRTYN
FT                 LRTRPRSFEVGQIVIKRNFVLSNLAKHFNAKLAPVGTKARIKRKIGNCLYL
FT                 LEDLKGKELGHYHAKDIWECK"
XX
SQ   Sequence 7177 BP; 2208 A; 1441 C; 1487 G; 2041 T; 0 other;
     tgataaaata ataagaaaaa tggcgcccaa cgtggggcct gaacttctgc tcttccgctt        60
     ctcaccaccg agatccggaa ttggcccaca agaacttagg agagagccga tagcattgtt       120
     cgttacatga tttgtcacga gccaatgtgg acgatcctaa gttaaatcca tgctagcttt       180
     cacccttctt cctatcctta tcacaatata ccatccaaat aattttagtt tccgtgacga       240
     catttatcct ctcttggaac tgctggtatt ctgatgtctt ttgttggagc cagaccagga       300
     agtaaatagt cgagcgattt atttagtgga tcagttatac tgttccacta gaaatcttat       360
     tatgttttcg ccacttttga ttcatttagg acttttagat ctgatttcga gtcggttctc       420
     taccaagtga tagaaggttg gtagggcata ataacattcc gtttgttcta gttgaattga       480
     gaattgttct ggttgggtta tttcgactcg tccctcttca actttgttca gacaactcaa       540
     cactgattta gtaaaatagt ttgcttgctt ttcgtaagaa gatatatcaa acatagagat       600
     ttagattatg cgagaaattt acctaaggat aagtcccatg ttataaaatg ttataatatt       660
     gtattagcat cgaagtgcct taaacctttt cattctgcct taaaaccgtt tccgattttc       720
     ataattatcg ctcattagcg cttctcgtat atatcttaaa attaaaatcc tttcgggagc       780
     aattcccatt taactctttg accaattata atcgatttat tgatgatggc tgtcgttcgt       840
     agtcaggaaa atttaactct cagcgaagca cctgcagtgt gtactatctg caatgaatca       900
     tcgattggtg atgcagacac tgtagaaact ccatgtgctc ataaatttca tcgaaattgc       960
     ctaaatcaat ggttaagaag caatgagaca tgtcccactt gcaaacgagt ttgtagtcga      1020
     gaattatacg aagatagcag tgacttgaat gcagtagctt cacaaagacc tacaaacacg      1080
     gtcccgaact attacaccca accctctaag gaatcgcttg gtttgtcaga acagcgtgtg      1140
     cagttgctta tcagtaagac attggaagcc cataaggctg aaatggcctc ctatttgtcc      1200
     gaagaattaa atgccgcagt tagaaattta aacttgtatc aggagccacg tgaggaaccc      1260
     caattagaat gggaaaatga ttttccacgt gatgcaccgc gatcgaacaa cgcttcgaga      1320
     ttaccgaatg ctagtgttca gtctgatgcg agacgtgaat acgcagtcga taggcccgac      1380
     aaaatatcga gtgtcatatc caattgggat gtcagatttt caggcgtggc tagtgatatc      1440
     ccagtcgacg actttatata tcgcataaat tgattgactt cacaatgttt aaatggcaat      1500
     tttaggttgt tatatcagtt tgccaatttg ctgtttaccg gaccagcttt gacatttttt      1560
     tggagatatc accgtacgac tgaccaaaca ggctggttca atttgtgcac atgcttgcga      1620
     gaaagatata aagaccacag atcagacgaa gacataaaag acatggtgag aagacgcaaa      1680
     caacgagggt ccgaaagctt tgatgaattt ttagatacga tgcttgcctt gtcagatgcg      1740
     ttacgggaac caatgtcaga ctcagagtta gtgatcaatg tcaagcgcaa cctaaaacca      1800
     gaattgagac acgaactact tcatgtaaat actccgagtc ttgcgacatt acgcaaagaa      1860
     tgtcacaagc atgaagcgtt ctattcgaat tacctttcca agccaatttc tcgaccaatt      1920
     ataccacaac gagtagtcaa cgaggtagtc catgaagata ccacaatgac ggatcttacg      1980
     cagaatctgg tagaaactgg ggacttatat gctatacatt ctccggataa attgatttgc      2040
     tggaactgcg aggaaaaggg acacagatat caagaatgtt taaaagcgcg tcgtgtattt      2100
     tgttacggct gtggtgccgt tgacacttac aaacccactt gtagaaagtg taaccctgtt      2160
     tcggaaaact ctccggagga ctttcgtcgt ctcttaaacg cgaatgtccg tcgtcaatag      2220
     cctcggatcc agactttaat aaagatacct taacacctga ttcgaccttc acaccagact      2280
     tatcaaaacc gtgtcagaca aaacttaaac cttaccacgt ccgtttacac gaatatttag      2340
     accgtagagc aactattttc gcttcagaac ccaaagttga atttaagcct cgttcgtcag      2400
     agagactaag aaacctatgg actcagcgac gctcgctaaa taagcatcgt atttcagcga      2460
     ttgatcatcg atcaaacgat gtgcgaccgt tcacgaattt agaaatattc aatcagcatt      2520
     acttagcctt gttagatagt ggggctacga aaagcgtgat tggagggagc ttagcgaata      2580
     aaattctcga ttcgaaaatt gactttaaca aaataaaagg cgatgtgaga accgccgacg      2640
     gacaaaaaca acatgttgta ggttccattt caattcctat cgtttataac tccattgcaa      2700
     ataatttcga attcttaatt gtcccgtcta tcaaggaaaa cgttctctgt gggatagatt      2760
     tctggagagc gtttggcatt tcagtacatc attcgaatac attgaactca gtggatttcg      2820
     aagaagtgga gtcgaatcag ttgtcgttaa cactagccca aaagaaacgc ttacaatcag      2880
     taatcacttc ctttccttcg tttgaaattg atggtctagg aaagactact cttgtagaac      2940
     atatcatcga tactggggac gccaagccca taaaacagag gttttatccg ttatcaccag      3000
     caagggaaaa attgttgtgc gaagaagtag ataggatgat caagcttgga gtcattgaag      3060
     aagctccata ttccgcatgg tcatctcccg cgatattgat tgttaagcct ggaaaagtca      3120
     gattttgttt agactgccgc aaggtaaatg aagtgaccag taaggatgct tatcctatac      3180
     caaatttaga tggcttgata agtagacttc ctcctgtaca ttgtgtgtcg aaaatcgatt      3240
     taaaagatgc cttttggcaa atctgcttgg atgaatcatc gcgggcaaaa accgcattca      3300
     ctatcccgaa caggccgcta tatcaattta agcggatgcc attcggattg tgcaatgcac      3360
     cgcagaccat gagccgattg atggatcaag taattcctta cgacatgaaa ggtcatgtta      3420
     tggtttattt ggatgattta cttgtactat cgcaaagttt tgatgaacat ttaattcatt      3480
     tggctgagat cgcaacacga ttgcgtaggg caggtttgac cattaatatc cgtaaaagta      3540
     atttttgtct aacaaaagtc gaatatcttg gttacatcgt aggtgaaggc accttgcagc      3600
     ctaatccggc taaagttcaa gcagttgcag attttccagt gccgtcaaca aaaagacagc      3660
     tgagacgatt cctaggaatg accggttggt atcaacggtt tatccctcag tattcgtcga      3720
     ttatctttca cctaacagaa ttgctaaagg gcacgtcatt tgcttggaat gataatgctc      3780
     aaatttcgtt tgaagaaatc aaaagaaaat tatcctcagc accgttcttg ataaacgcaa      3840
     actatgagaa gccgtttata gtccaatgcg acgcttccat gcatggcgtg ggcggtctgt      3900
     tagcccaatg tgatgagtca ggaatcgagc gacccatcgc atacatgtcg aaaaaactaa      3960
     ataaagcgca gcgaaattat tccgttacgg aactcgaatg tcttgccgtt gtattggctg      4020
     taagaaaatt tcgcatgtac atcgaaggac acgattttaa agtcgtgact gatcatgcaa      4080
     ctttacgttg gctaatgaac caaaaagatc taagtggtag actagctaga tggtcattca      4140
     aattgcaagg atataatttt tctatcgaac atcgcaaggg tagtgagaat gtggtcgcag      4200
     acacgctttc ccgtgccttt gagccagcag acgaagtagc tgcggtggac ctagaggtat      4260
     accctgaaat cgacttgtct tcggaggcat ttcgatccaa cgaatactgc cggctaaaaa      4320
     ataatattat tcgttccaac ttgccagatt ttcgagttgt agatgattat atatatttcc      4380
     gaaatgaacc ctcagctagt agtgtagatg agaacatgga gggttggaaa ttatttgtgc      4440
     catctgaatt acgcttaaat gttatgaaag cagcacatga tcaaccaaca tccgcgcatt      4500
     gtgggatggc caaatgtttg gaatgtattc gcagacattt gtactggccg aacatggtgg      4560
     ttgacgtacg cgagtacata cgccactgcg agttctgtca aacgtcgaaa gttcctagtc      4620
     gatgcctcaa accaaccatg ggaaaccaag tggtcagcga aaggcctttc caaaggttat      4680
     atgtcgactt tgttggtccg tacccaccat caaaaaaacg aaacattggt atattcgtca      4740
     ttctggatca ctactcaaag ttcacatttc tcaagcccat aaaaaggctc aatgccaaag      4800
     tagtggtaga tatactgcaa gaagatattt ttgactgttt tggagtaccc gagataatag      4860
     tgagtgacaa tggcactcaa tttaaaagcc tggaattctc ctcactcttg tcgaagtacg      4920
     gcatacagca tatgtgtacc ggtgtatact cgccacaggc aaacgcggtg gaaagagtta      4980
     atcgttcgat taatgctgct ttgcgcacat atattcggtc cgaccaaagc ctatgggatg      5040
     tatacattag cagtataaat agttcgttac gaaacaccat acaccaatct attgggattt      5100
     ctccatactt cgttgtgttt gggcaaaata tgattaagca cggcaatgat tacaagttgc      5160
     tcaaaagcct gaacatgctg aatgaagggc aattaaaact cgatcgagca gacgaatttc      5220
     ccttaatacg ttctaatatt caaaaacaca tggataaggc atatgaaaag aatttgcgaa      5280
     cgtataactt acgcacacgc cctcgttctt ttgaagtcgg tcaaatagta ataaaacgca      5340
     acttcgtttt aagcaatttg gctaagcatt tcaacgcaaa acttgcacca gttggaacta      5400
     aggcacgtat caaacgaaaa attggtaatt gtttatattt gttagaagac ctcaagggaa      5460
     aagaacttgg tcattaccat gctaaagaca tttgggaatg taagtaatca cccctttttc      5520
     agcttttatc tcagtattag ttaatccttt cgattaaacc tgcgttgtaa tggggtgatg      5580
     agttttattt ctgtaaacat aaacatacat tgccattggc atgatcagct gatcgcaatc      5640
     agcttgaaga ggcagcactg caccataaca tttatgcaat tacatatgat cagcggaggt      5700
     taataacata accagagtga ccatgaccta tgttaatgac gccgttgcga atgaaaatat      5760
     cgtgtcttgg gtgaatgcta aattgcttct tttagttttg gcgaggcgtc attcttttcc      5820
     attttaatcg ccaacgagta cagtcggttt agattgcttt aaaaattata aaattcaatt      5880
     tttcacgtgg gcgtaataaa cccacgtgta tcggcactca agctcaaaaa aaaaaaaaaa      5940
     aaaaattaat aaataaaagg gaaggaaaaa aggtccaagg tgcccagaaa gaaaaggggt      6000
     aatatagaca tcatgcgctc ccaagagctt ggctataaca tttcaccgga ataaagaaaa      6060
     ttttcagaat tcggacactg acaaatattc actaaaggat cgttactgga gtcgtggggt      6120
     gcctttcctg tgtgtggtag tcgtaggaag gtgcaggcta aagcgcgggg ctgcgttatt      6180
     gcgtgccaaa aagaaaaatt acgcataacg cgtagtcctt atcagagcca aagccaaggc      6240
     cccaaagctc caaaaagcga caatctacac tggtagcagg gagcgaattt cctaagggcg      6300
     gaccaagatt tcagcatcgt ctcattttct gcagataagc tttgaacctc gctaaccaat      6360
     agttcgtgct gcacgcacag gcagaccaac gtgaccacgt gttcgaccca ttgattcccg      6420
     gacattcctg agcgcagatc tggtggatag ctaaccagtg cgcaccctca ctcggattta      6480
     caacatctga cataattgtt aaacggcata ctggccgtag gtataagcga agggcataag      6540
     tacacatgaa atttaaattg caattctttc cgttttatat cgctgacatt gtctttcgat      6600
     cctgatttag catgtatatg tcgctgacta ctatatttct acgttacata gttcaaatta      6660
     agagcccaca gcacatcatc gtcgtcaata ggcctgctga catcgttgga tcatactaaa      6720
     gtagtgagta ctgtgtgaaa gaacaaaaga taataagcca acatatcgaa ttgtacgtat      6780
     tgtttgaatc gcggttatag tcagcgggtg tactcctaat cagccttcgt aattacaaat      6840
     aacttttgtg gatcattcag atcagcagtg atttaacttc atattagttt cgtgtaatct      6900
     cattcatgtg tgtttttgcc cagattgagt ttagttttat aaaaaaaaat agaaaaacgt      6960
     tgttcttctc acgtaatgta taatgaagtc cgatcatgag cttaaatctt ctttgaatac      7020
     acttatatga taaaatgaaa tcttaattcc tttttgggca ccttaggtaa atagtatcgc      7080
     atacaaaagg gtagttgcaa cgacaatcgc agatgcagct acaggcaggg tgggtgaaga      7140
     ccaagggtag ccaacatcta agctcctcgg ctctata                               7177
//
ID   Gypsy-2_DVir-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   scaffold_7526;
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   07-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DVir_;
KW   Gypsy-2_DVir-I; Gypsy-2_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-237
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (07-MAR-2011).
XX
DR   Genome; scaffold_7526; Positions     634     398.
XX
SQ   Sequence 237 BP; 52 A; 64 C; 53 G; 68 T; 0 other;
     tgatatattc tgcttgcaga tcgtagtcgc tccttatata tcgtggtatt ccgtcctacc        60
     ttaactctgt ctaccttttt tttctttatt atacttgacg cgtcgagtgt gttagggagc       120
     aaaagaaccc acgccacttc cctgagcacg gtcggaaccc gtagacggag tacgctccca       180
     atgcacaaca cgagtgttag gcaagacgcg cccagcgtag ccgtcgtgtt cgttaca          237
//
ID   Gypsy-2_DWil-I repbase;    DNA;    INV; 5631 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DWil_;
KW   Gypsy-2_DWil-LTR; Gypsy-2_DWil-I.
XX
NM   Gypsy-2_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5631
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
RN   [2]
RP   1-5631
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
CC   99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           829..2313
FT                 /product="Gypsy-2_DWil-I_1p"
FT                 /translation="MSVRHSSEDLAAIQDDNTLCLICDKPIQYRAQLRSTT
FT                 CGHHFHIACFNIRVGSREICPTCDQPLQSMEGDGAEALSGGPQTSHQARVQ
FT                 TRSAAQRANLLAEMAQRDVSQERRLDESVEPAESVRNSDVNLARLIANAMA
FT                 TAASRQNERLEIQAVRQTELLTQALENGFQRLYSVVATHQANAEESTQQAA
FT                 NLRSQVSATAASEQASNSNSILELRPDRISQVISSWKLRFNGKSGISVDEF
FT                 IYRAEAMTHQALEGNFVVLSRYVSNLFEGNASEWFWRYHKKVSHIKWLDLC
FT                 RALREQFKDERTDQHIKAAISKRRQGDKESFDEFYEAIVALADKLSTPLPE
FT                 IELLEHLRANLLPDIQHELLYESIASVSKLRQLVRTRETFMQTVRKPLGVP
FT                 PRPMPRRMVNAVSIQTEEESEAEDDVPVVEAVNLVCWNCDTAGHPYQECVA
FT                 ERRVFCYGCGKPNTYKPSCTHCNDHSKNTAGRALRRSARKQMISRASNTD"
FT   CDS           2235..5558
FT                 /product="Gypsy-2_DWil-I_2p"
FT                 /translation="PFKKHGRSCTSEKCTQTDDLEGQQYRLEETQGLEEYL
FT                 PEFTHIPDEKSQEISKYSETEPVESPRLGIYWSKTRSRERRKVFNKGVKKE
FT                 RKLIASAVVGNVFDIRPYAEVKLFNRLVSGLMDTGASISCVGGSFAEELLA
FT                 VKQNIRPMSNKVNTADGTPQQIVGKISTEVNFRGNSKILKFYIVPGLTQDL
FT                 YLGIDFWLAFDLLPSGLSVGPIQIASLSVEDTAQRMLDSNQKQRLSECMGL
FT                 FPSFAKLGLGKTQLLSHVIDVAGAAPIKQRHYPMSPAKEQLIYEELDRMLK
FT                 LGVIEESQSAWSSPVVLVSKPGKHRLCIDSRRLNAVTVKDAYPMPIIDGIL
FT                 SRLPKAEYITSLDLKDAYWQIPLQPESRDKTAFSVAGRPLYHFKVMPFGLC
FT                 NAAQTMSKLMDKIVPPHRRHQIFIYLDDLLIVSDSFDEHITLLTELSKCIS
FT                 DAGLTINVEKSHFCRKNVKYLGHIVGEGTIKTDPDKISAIVDFPTPKSVKQ
FT                 VRRFLGMAGWYHKFIQNYAAIASPITDTLKHKRKFIWTSEAQSAFEDLKTR
FT                 LSQAPVLHSPDFRKPFSINCDASHTGVGAVLTQLTEDKDEVPIAFMSKKLN
FT                 QAQRNYSVTEKECLAAVLAVKKYRAYVEGQEFSIITDHASLKWLMSQSDLS
FT                 SRLARWSLKLQGFNFTISHRKGSKNVVPDALSRVFTPDLAVLDSDLGIDLN
FT                 SAHFLSPEYVELKTKVEKNPQSVPDVKVMGNLVYRRSEHFPGERLADDHCW
FT                 KLWIPKGLVEQLLKSAHESPLAAHSGINKTLEKLRRYYYWPNLVSEVKEFI
FT                 NRCEVCKATKHPNYTLRPPLGKSGETSRFFEKLYVDFLGPYPRSKSGNIGI
FT                 FIVVDHFSKFPFLKKVKKFTAEVVTQFLEEDLFHCFGVPEIIVSDNGPQFR
FT                 AHHFNELLQRYKVRHTYTAAYAPQANVSERVNRSVLAAVKAYVSPSQSDWD
FT                 EKLSSIACALRSTIHSAINTTPYRMAFGQHMVTDGSVYQVLRNLELLEDRA
FT                 VRFSRDDSFEIMGTKAKEESRKQHDRNEKLYNLRSREVSFSVGQEVFRRNF
FT                 QQSNFSKGFNSKLAPPFVKARVRRKLGNAYYELENLQGHVVGKFHAKDIKQ
FT                 "
XX
SQ   Sequence 5631 BP; 1740 A; 1040 C; 1336 G; 1515 T; 0 other;
     gttagttaag tattcataat tttattaatt ggcgcccaaa cgtggggcca aatcggtttc        60
     gggagccccg acgacaacat tttagtcaac aacagctttt cttatgggta tttatatctc       120
     ggttttcgaa cgctagtatt ctttactgta ttgggtggtc agtcggagta cataaaagtt       180
     tcgacataac tctatgtcca caccaccaac aaaaaaaaaa aaaaaaaaaa cattagggca       240
     acgcacaatc aattggtcag ctggatcagc cttaaattct aaaatatttt cggctccgcg       300
     cttaggattg tcggtgtagc cacaggtaat tttcgatagt cagaaagagt attttttttt       360
     cgttttggat caggtttaac aatggtcaaa gactatagcc tccaagcggt taataattct       420
     tagaactatt ggttttttat ttgcctacaa gttaggtaca aaatgtttat tgctttaagc       480
     agttaggtaa attgtaagga gttatgtgat acttggcaat aagctagggc atacctgcaa       540
     tttcaattat acttaaagcc ctcttttatc gttattttag cagctgctca aaccattttt       600
     ttttaacaca tggcatgatt cccctcatta cttttatgaa agttattcaa ttttttttat       660
     attttcttta tttctttgcg atattattat aataagtata actttattaa tcaaacaatt       720
     tagtggaaac agtttcatca ggaattaaac agatctggga ttaaaatctt aagagcgaag       780
     tcctcagcat agttagttaa caaataggta caagttttgt tctgagaaat gtcggtaagg       840
     cacagcagcg aagatctagc cgcgattcag gacgacaata ccctttgcct tatctgcgat       900
     aaaccaattc agtatagggc gcagctacgg agcactactt gtggtcatca cttccacata       960
     gcgtgcttca acatacgcgt cggtagtagg gaaatttgcc ccacttgtga tcagccgtta      1020
     cagagtatgg aaggagacgg agctgaagca cttagtgggg gaccacagac cagccatcag      1080
     gcaagagtgc aaaccagatc agcagcgcaa agggccaact tactggcaga aatggcacag      1140
     agagatgtta gccaggaaag aaggttagat gagagtgtag agccagccga atctgttagg      1200
     aatagcgacg tgaatttagc aaggttaata gcgaatgcca tggcgacggc tgcatctcgg      1260
     caaaatgagc gactggaaat tcaagcagtc agacaaacgg aattgttgac acaagcgctt      1320
     gaaaatgggt tccagaggtt gtactcagta gtagcgacac accaggcgaa cgctgaggaa      1380
     agtacacaac aggcagcgaa tttacgtagc caagtatcag caacagcagc tagtgagcag      1440
     gcaagcaaca gtaatagcat tttggagctt agaccagaca gaataagtca ggttataagt      1500
     agctggaagt taaggtttaa tggcaagtcc ggtatatcag tggacgagtt catttataga      1560
     gcggaagcaa tgacccatca ggctttagaa ggtaatttcg tagttctgtc gcggtatgtt      1620
     agcaatttgt tcgaagggaa tgctagtgag tggttttgga gataccacaa gaaggtatca      1680
     cacatcaagt ggctagactt atgtagagcc ttgagggaac aattcaaaga cgagcgtacc      1740
     gatcagcata ttaaagctgc tatcagcaaa cgcagacagg gagataaaga atcgttcgac      1800
     gaattctacg aggcgatagt ggcgctagct gacaaactgt ctactccgtt accagagatt      1860
     gagttactag agcatcttcg ggctaatctc ttgcccgata ttcagcatga gttattgtat      1920
     gagtccatag cttcggtctc taagttaagg cagttagtgc gtactagaga aacctttatg      1980
     cagacagtac ggaaaccatt gggtgtacca ccaagaccaa tgcctaggag aatggtaaat      2040
     gcagtgagca ttcaaacaga agaagagtct gaggcagaag atgacgtgcc agtggtggaa      2100
     gcagttaatt tggtttgttg gaactgtgat acggcgggac atccctatca agagtgtgta      2160
     gcagaacggc gagtgttttg ctatggctgt gggaagccaa atacgtataa gccatcttgt      2220
     acccattgta atgaccattc aaaaaacacg gcaggtcgtg cacttcggag aagtgcacgc      2280
     aaacagatga tctcgagggc cagcaataca gattagagga aacacaaggg ttagaagaat      2340
     atttgcccga atttacgcat atccccgatg agaaatcaca agaaatatct aaatattcag      2400
     aaacggaacc agtagagtca cctagattag gaatctattg gtcaaagact cgttcaagag      2460
     agcgaaggaa ggtttttaat aaaggtgtta agaaagagcg aaagctaata gcctcggcgg      2520
     tagtcggcaa tgtttttgat atccgtcctt atgcagaggt aaagttattc aatagattag      2580
     taagtggcct catggatact ggggctagca taagttgcgt tggtggcagt tttgccgaag      2640
     aattattggc tgtaaaacag aatattaggc caatgtcaaa taaagtaaat actgcagatg      2700
     gaacacccca gcagatagta ggaaagataa gtactgaagt taattttaga ggaaatagta      2760
     agatattaaa attttatata gtccctgggc taacccagga tctttactta ggcatagatt      2820
     tttggctcgc tttcgattta ttaccatctg gactgtcagt aggaccgata cagatagcta      2880
     gtttaagcgt tgaggatacg gcgcaacgaa tgctagacag taatcagaag caacgtttgt      2940
     ctgaatgtat gggtttgttt ccatcattcg ctaagttggg actagggaaa acgcagctgc      3000
     tgtcacatgt aatagatgtt gctggtgcag caccaattaa gcagcgacac tatcctatgt      3060
     caccggcaaa agaacagttg atatatgaag agttagatcg tatgttaaaa ttaggagtta      3120
     ttgaggaatc tcaaagtgct tggtcttcgc ctgttgtgtt ggtgagtaag ccaggaaaac      3180
     ataggttatg catagatagt agacggctga atgccgttac agttaaggat gcttacccaa      3240
     tgccaatcat agacggcatc cttagcagat tacctaaggc cgagtatatc acaagtctcg      3300
     acttgaagga cgcgtattgg caaattcctt tacagcccga gtcacgggat aagacagcct      3360
     tttcagtagc aggtagaccc ctgtaccatt tcaaagtaat gccttttgga ttatgtaacg      3420
     cggcacaaac catgtccaaa ctcatggata aaatagtgcc accgcatcgg cgccatcaga      3480
     tatttatcta cttagatgat ctgttgatcg tctcagattc gtttgacgag catataactc      3540
     tacttacaga gctatccaaa tgtatatccg atgcagggtt aactataaac gtcgagaaaa      3600
     gccatttttg tagaaagaat gtcaagtatc taggacatat tgtaggtgag ggaactatta      3660
     agacagaccc agataaaata tccgccatag tcgatttccc caccccaaaa tcggttaaac      3720
     aagttcggcg ctttttagga atggcgggtt ggtatcacaa attcattcaa aattatgctg      3780
     ctattgcgtc tccaattaca gatactttaa agcataagcg taaattcata tggacgtcag      3840
     aggctcagtc agcatttgag gacttgaaga cacgtttaag ccaggcacca gttttacata      3900
     gtcccgattt tagaaaacct ttctccataa actgtgacgc cagtcatacg ggagttggcg      3960
     cggtgctaac ccagttaaca gaggataagg acgaagtacc cattgcgttt atgtcgaaaa      4020
     aactgaacca ggcacaaaga aattactcag ttacagagaa agagtgtttg gcagccgtgt      4080
     tagcagttaa gaaatatagg gcctacgtgg agggtcaaga attttctatc ataaccgacc      4140
     atgcttcgtt aaagtggtta atgagtcaat cagacttgag ttctaggttg gccagatggt      4200
     ctttgaaact tcagggattt aattttacca tttcacatcg aaaaggtagt aaaaacgtgg      4260
     tgccagacgc tttgtccaga gtttttaccc ctgatttagc ggtattagat agtgatttag      4320
     gaatcgatct caattcggcg cattttctaa gtcccgaata tgtggagcta aagacgaagg      4380
     tcgaaaaaaa cccccagtca gtaccagacg tgaaagtaat gggcaattta gtttaccggc      4440
     gtagtgagca ttttcctggg gagaggttag cagatgatca ttgctggaaa ctatggattc      4500
     ccaagggatt agtggagcag ttgttgaaat cggctcacga aagcccacta gcggcccaca      4560
     gcggtattaa taagacattg gaaaaactta ggcgctacta ttactggcca aatctagtgt      4620
     cagaagttaa agagtttata aacagatgtg aagtttgtaa agccaccaaa cacccgaatt      4680
     atacgttaag gccaccatta ggcaagtcgg gtgaaacgtc aaggttcttc gagaaactgt      4740
     atgtggattt cttgggtcct tacccgcgaa gcaagtctgg caatattgga atatttattg      4800
     tagtggacca cttctcaaaa tttccgtttc taaagaaggt aaaaaagttt actgcagaag      4860
     tggtcacaca gtttctagaa gaggatcttt ttcattgttt tggggtacct gagattatag      4920
     tttccgataa tgggccccaa tttagagcac accattttaa tgagctattg caaaggtata      4980
     aagtgcgtca cacatatacg gctgcgtatg ctccgcaggc taacgtgtca gagagagtaa      5040
     accggtcggt attggcagca gtaaaggctt acgtaagtcc aagccagtct gattgggacg      5100
     aaaagctaag tagtatcgct tgtgccttga ggtctactat tcattcggcg ataaacacaa      5160
     caccctatag gatggcattt ggtcagcata tggtaaccga cgggtccgtt taccaagtgc      5220
     tacggaactt agaattgtta gaggatcgag ctgtgaggtt tagtagggac gactctttcg      5280
     aaataatggg aactaaagct aaagaggagt cacgaaaaca gcatgatcgg aatgagaagc      5340
     tgtataattt acgtagtcgc gaggtgtctt tttcagttgg acaagaggta tttcgtagga      5400
     acttccagca aagtaatttc tcaaaaggat tcaattccaa gttagcgcca ccgttcgtga      5460
     aggcgagagt gagacggaag ctcggcaacg cgtattatga gttagagaat ctacaaggtc      5520
     atgtggtagg caaattccat gcgaaagata ttaagcaata attttttttg cccggtttca      5580
     agcgagtatc accctttcca ttaggtaagt gtgattttag tgggggggtt t               5631
//
ID   Gypsy-2_DWil-LTR repbase;    DNA;    INV; 2501 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_DWil_;
KW   Gypsy-2_DWil-LTR; Gypsy-2_DWil-I.
XX
NM   Gypsy-2_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2501
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2501 BP; 739 A; 414 C; 472 G; 876 T; 0 other;
     tgtagtagcg cttgtaaccg tttgtattta ggaagaaaat aaaaaaaaat gagaaagaat        60
     gatttttttt gtctataact aaaacgacat ataaacgttt tatccctaaa agcgagcaat       120
     ataagtttca tatagtaacc gtgttcactg ctttcactgc ttacactgct tgcgctgctt       180
     gtattgttag ttagcgttat actaactaac agaatgttag tctactaggt aaaatttggg       240
     aaaggtagga gctgcgtttt cgagattcgt tttttttggt tgtgttcaga aaattttctt       300
     cgaatttttc aatccgatta ctttctcttg cgtttttgtg gcgcccccta ggctcctcta       360
     aagttgggat cagggaagtt taggggtaat cgaggtgaag agaggggtcc aaagaggact       420
     aatggataga gagttaacca agtatgtcgg cccccatggg aatgactttt ctttttcaag       480
     ttatcttcaa gtagtgcggt cacaaaaaag aaaaaaaaat taaagtgata gtgaaaacga       540
     attttattgg aaaaaaaaag tctgactgtg aaaaagtcgg cataaattgt gaattcgaag       600
     cagttttctg ctaaggagta tagtatgtgt cttaagaaag tgaatgtaag tacggcgtta       660
     tacaaacgcg taaattagtt atggaaaaat tttatttagg aaaatataaa ttttcatctt       720
     ttaggcacat gtcagcctga attagattgc taagagaaag gcatatatac atatttttaa       780
     tccggtgcca aatcaactgg taactattag caaaaagcgc cttttgagtg cgtgtgtact       840
     aagagtgttt tttttataga attggcacct agttttggtc taaacctagt tttggtctaa       900
     acctagtttt ggtctaaacc tagttttggt ctaaacctag tcctggttca aacctagtcc       960
     acagactaga tataatggta taagtctaac agcgaactta agagaggcgc aggagaggca      1020
     cgcccgtcga aacggactga agcccacggg agcagcagac tctcgagaag gagtattttg      1080
     gcgcagacat ttggccagaa gagatctgat gcgacaggcg taaaaagaga aaaaaaatat      1140
     aaagagtata tgattctcta ggcccccccc actacccttg ctttgcgtga taagcaaaag      1200
     ctttctttag atgattatca gccagcgaag ctttcatgtg tagccgcttg gcttgcgttt      1260
     tgttttgttt tttttggtta ctggtgattg ccgcatagcc tccaaccaca aaaaaaaaaa      1320
     gaaaaattaa atatcttcgc caggccctaa tgatgaatgt aactctttaa ttttgggcac      1380
     aaataattta tgcccttgat ttttttttat ttttttttat atataatgtt atcttaaagt      1440
     taatcttttt aaatcgtaaa attctgatgc attggcgttc tccaaagcca attttatttt      1500
     tttttctttt atttcatttt gcttttgtaa ttttttttat gtaatttttt tttggtcatg      1560
     attgaacttc gatgaaaatt tttatttaac ccctttttcg gcacgcctct ggcaaaagct      1620
     tatcatgtgg tttaattctc tctcaagcca gcaacaacaa ctctccctat atttaatgca      1680
     attgcttaca gctgtcacca gaaagatctt tctccgtggg atgcttaagt gagtactctt      1740
     ttgttttaat atcatttttt tttgctgttg gtatatgatg gtaaagtaaa gagagagtta      1800
     aagcagtttt cgttgctctc gtttaaataa cataaaaaaa attaaatttt ggtaaagtca      1860
     tcagaagttt aacttatgct caaaaaaaaa ataatttttc tttccttgaa tttcaaaatg      1920
     ctttctatat aaacattgtc atacctatat atatatatta tcatatcacc tttatatcat      1980
     tatctatatt tttgatcttt gaaatgcctt attatattgc ttatagttat taaatataag      2040
     tttttgaaat gaatttggtc tgagacgttc atgagggggg gaatcatgcg aagtaagtta      2100
     ggttgaaaaa ttggtttggc atagggatcg ctgtgtaatt ttatattttg gctttagtac      2160
     agcgatcatg gtagggtggg cgaatttttc ttttgggcgt cactgacatc tgaccccttt      2220
     ctttttcagc agctgcgcta aaaacgacgg tctttctgtt ctcttctcat ccttttctct      2280
     attcttttct ttttttgtac gaaacgttaa accgagtata agtagtctta gtacgcgaat      2340
     ttattaataa aattttctac tagcagagcg ggtagtctat ccattccccc ccatccccca      2400
     tttctcaccg actaatttga gccgaaacca gcgcgtacac ttgataggta ctaccagttt      2460
     ccaacagctc gcagtaaact tgtagcaggt tatatgttac a                          2501
//
ID   Gypsy-2_FoCa-I repbase;    DNA;    INV; 9166 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-9166
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2571-2571 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..1651
FT                 /product="Gypsy-2_FoCa-I_1p"
FT                 /note="zinc fingers."
FT                 /translation="MTTTKPVKLGVIPSTFSGRADQDPYKYLQRFELAAQA
FT                 NSWDETIKTAQLQNYLADTALLWLHKYLKEQNAQATAAASGTPTIAKIKWK
FT                 DITEALQKAFRTVASKEVAEDKMLARKQRSGESPEDYVYAKIDLISDYESD
FT                 MDETTQVRHIVRGLKPLYFEKIYPQNLKTVEEVLNQIRRISDTQFLITKYE
FT                 EVNSVXPATKAVADLSKILELQNKQHAQQMDKMMEVFTTQFKFQNNKTQNF
FT                 SQQNNLVQCANCGKRNHNANQCRGQKAPRIQCMHCGKFGHIAGVCRSQQSS
FT                 XITCXTCNKVGHILNMCLSQVTCNQCQRRGXLSRNCRSGNQQGRSSTNPTP
FT                 NNRTPPTRGSTVNAVEXTTPDLNMA"
FT   CDS           1468..5823
FT                 /product="Gypsy-2_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YVPIAGYLQPVSTKGXFITQLSVGKPAGAEFNQPNTE
FT                 QSNSANPRQYSECCGXDNPRLEYGLAMNSSNLTRTCGXVNNLPAQILYDSC
FT                 SSATIVNSKFVTXIQXLSYTVNVTGISNNPMKTIGYANLKIKLDGQSSAID
FT                 FKXYVIENFKYDLLLGLDFHKLHXVHLNFAKEEITVDQXTXPMDPIQVTDL
FT                 XTQAVETNVKESKKIIPVICSRDQSITNSTCKRIEVEYQGEINPINMIYMH
FT                 TNLAELSLYMPTILLRKEFSANLYLPITNITDKKILLKKGTKIAEIHVLAD
FT                 IPIEETSFTTDHDITKNKQESNLPQPTHTDKSHLEKLLSRIHPEAPSEEKE
FT                 EIAKVLTEYQDVFSKPGEIGLVNCYKHKIQLIEGAKPVKKAPYRKPAHXEK
FT                 FERETVQDLLNKGIIRPSHSPWASGVVIVTEGHKNSEGQKSPRLAVDYRNL
FT                 NSQIQQDSFPLLNIQTVLDWIGSRANFISVMDCSKGFWSIPLEEESIPLTS
FT                 FICSSGLFEFLRLPFGISTGSQAMQRVISIILCGLMWESVLAFIDDIILAD
FT                 KTIQNHVRHLRATLARFREXGIKLNVEKSYFLKPNIKILGHIIXKEGISAD
FT                 MSKVSAILKIPPPQKPNQLKELQHFLGCANYFRRYIANYSTISEPLTKLTR
FT                 KNIPYIWGTEQEQAFQALKFHLTNPPLLAFYDPDRPIHIQCDASGVGIGSC
FT                 LMQLSEKGHEQPVAYASKTLNEYQRRYNNTERXFYAIYHALRVXHPYIYGK
FT                 KFKIFTDHQTITQIKFASQTEKTSNRLTTWALLLQEHNCTLMYRKGSEQKI
FT                 ADXLSRLPIEDPEKLEIPTLCLEXSHXLELQQLDKECQAILSSLXTGSTKF
FT                 KIKDGILYNISLGYARLVVPKILRQEILNDFHSIPMSAHLGLTRCYQKLXL
FT                 RFYWETMKSDLYDFIQACASCTSIRRNYDKFPGLLHPIPVPEFPMQFISTD
FT                 ILGPFRLTKAKNVYIINAICLFSKWAEFRAIPDQSSQTVVKFLHEAIFCRH
FT                 SAPQFLLSDNGKSYVSNLLKTHTELYGVKHKYITPYHSRGNGLSERLNSTI
FT                 GRMIAHFVNQQHSDWDKKLPDLQFAYNTSVQESTKQTPFKIIYGRNPNYLF
FT                 DFKENINDPSSKIELQELRKQVKAVLKLEQQRYKEREDAWRKPVYYETGQV
FT                 VKLKYPKKTKIIGQSLKFIPHYLGEYKVIKKINDLSYEAKCLKTDRIIKTS
FT                 VERMRKFLIEDDDEVENFQSVSLLREELLNPXRIVKTVSELKLESFYDQHE
FT                 HFVQYVPFKVQFNPDVNNLTYQDTSLLDLTDLGILPSVKDQFKDQDKIYKL
FT                 IKHQNTKLPVFRMIKTREQIEAFSSTMKTHKLIIWGTDDDIVQFLCKYVIY
FT                 KHLSLHLYPSITCFLVHLSQYIKINKSKLDNIFKEILEEIPXDNVIMQDDD
FT                 DDEENDDIPNFSPSPRKSKXIKYRPIWHSDYHFYSSPL"
FT   CDS           5687..7831
FT                 /product="Gypsy-2_FoCa-I_3p"
FT                 /note="Herpesvirus Glycoprotein B ectodomain."
FT                 /translation="MLLCRMMMMMRKMMTFLISLPAQEKAXVLNIGPFGIL
FT                 IITFIVHLFKMAIFFNXLVPSFLFQYTFMQTLLIQPTQGEVPIQDYFINMN
FT                 XKDIPIILCRGYSEGVLWXLPPKIECPLVNITKPSKVTXWWQDITKQSISA
FT                 YECFKETVYERKSYFFFGTYSSEKNTKRETVSVHDCHNIVYKDIAPNGQKF
FT                 KMIADGLFWTGNTYPSLEYTWPKTQEVLTVNYFFINMKISINNEDDTIITM
FT                 TKVLDTCKAQQGHCPTQDGILIWKSEDVDHCRLAEGETTDCLYTDNRISCP
FT                 ALNLAISDPKTISMCKRTIGYSKQGLMFTPINNSEVDFISLSTHKFREVVQ
FT                 GKVKVKRDIMKPLLFPKVKLDAQVNGELQFLYDALRDDVSYALQIIHRDTC
FT                 KSQQLELELVRALAEFGQSSITVRALTRDGRYRSTLRGDVLSVFKCTEIWE
FT                 YMFLRQTNCTLEYPVSYMYQHQKHEGWIQGLSHEIVQSPTMTSCPAPVWLF
FT                 DMGNKVIQLSNHSLPASTIPYLPSPRETAEYPTIRDLSFDQTGIYSLKQIS
FT                 GETTILDLMQQLQERTRISDLIKTKEEGASFNTEQIRLSRLIQDITLDPIR
FT                 KYFNITITICITLLIVYILYTLLKFHRLRLGNEFPFLRNLPIFGHIFTNQE
FT                 IQIENSATAPNDLLLFSNETQSDSDSLTQESRIQMEPLISNQSLEVNAIQS
FT                 EYPNASLYALKRVKY"
FT   CDS           8596..9120
FT                 /product="Gypsy-2_FoCa-I_4p"
FT                 /translation="MQKNIEKESKNIINHNVELGKLMFSINNLKIDSSTKV
FT                 KKLFTNPFYGYSFPTSIKISKPKNVKKSNKKLLKVTNKIKEKQAKQKLLDK
FT                 EIVRTIKLTDSHNDKIKPNLNGKIDKKVKIKKNNSYMSRFKKGKFIELENQ
FT                 MNEISNHLNCKNVQNLDELQQKIDQCQNIINNLLFH"
XX
SQ   Sequence 9166 BP; 3320 A; 1705 C; 1484 G; 2604 T; 53 other;
     tttggtgcsg aaactaaaat ctttcaaaat ctctttttac ataattckct acacatttag        60
     aaaaattttc aaaaaattat tttgsgcatt tcttttcstt tcacgatgtt ctcttgctta       120
     tctcctaaaa agaaggataa aactaaaatt aaggaaattg acttaacaca aggcaaagct       180
     actctccaaa accaggattg taaattcgaa atcgatctga attcatctgg tgaatmtcaa       240
     wcgacwcaga aaaattcaaa aaattcgwaa aagtaaaata aaatcccgaa ttttagcatt       300
     tattwtttgt ctcatttttt cacaatgttt tcctgtttca aaaaagaagg ctcaaagcca       360
     acatctgaaa ctcctaaagt mgagccccat cataaaaata tcactatgcc taggactacg       420
     tggtatgtgg acttgcctac cacacaaaac actcagaaat cttcagtaga acmaaagcaa       480
     cccaaaaagt agggcacagt tgaccttttc cattttcatt actgatcgta aaaacactcc       540
     astgacaatg acwacaacaa aacctgttaa gttaggggtt attccctcta ccttttctgg       600
     tcgtgcagac caagacccat ataagtattt acagcgcttt gagttggctg cacaggccaa       660
     ttcwtgggac gagacgataa aaacggctca acttcaaaac tatttagctg acacagcgct       720
     tttatggctc cacaaatatt tgaaagagca aaatgctcag gcaacagccg ctgcgagtgg       780
     tacccctacg attgctaaga tcaagtggaa agatatcaca gaggctttac aaaaggcttt       840
     ccggacagtg gcctcgaagg aggtcgctga ggataaaatg ctagctagga aacagcgttc       900
     gggcgaaagc ccagaagatt atgtctatgc caagatagac ttaatctcag attatgaatc       960
     tgacatggat gaaaccaccc aggttcgtca cattgtcaga ggcttaaaac ctttgtactt      1020
     tgagaaaatt tatccacaaa atttaaaaac ggtcgaagag gtactcaacc agattcgtag      1080
     aatttctgac acacaatttc tcattacaaa atacgaagag gtaaattctg tggmaccagc      1140
     cacaaaagct gtggcagatt tatctaagat tctagagcta caaaacaagc agcatgcaca      1200
     acaaatggat aaaatgatgg aagtttttac gacccaattc aaatttcaga acaataaaac      1260
     ccaaaatttt tctcaacaaa ataacctggt acaatgtgcc aactgtggta aaaggaatca      1320
     caatgcaaac caatgtagag gtcagaaagc tcccagaatc caatgcatgc actgtggtaa      1380
     attcggccat atagcagggg tttgtaggtc acaacaatct tcttstatta cttgtgscac      1440
     atgcaacaag gtaggccata tacttaatat gtgcctatcg caggttacct gcaaccagtg      1500
     tcaacgaagg ggcmatttat cacgcaactg tcggtcggga aaccagcagg ggcggagttc      1560
     aaccaaccca acaccgaaca atcgaactcc gccaacccga ggcagtacag tgaatgctgt      1620
     ggaawtgaca acccccgact tgaatatggc ctagccatga attcttcmaa tctcactaga      1680
     acatgtggca tkgtcaacaa ccttccggct caaattcttt atgactcctg ctccagtgcs      1740
     acaattgtaa attctaaatt tgttactgaw atacagsctt tgtcmtatac tgtaaatgtt      1800
     actggaattt ctaataaccc aatgaaaact ataggatatg ccaatcttaa aataaaactg      1860
     gatgggcaaa gttcagcgat tgatttcaag gmttacgtta tagaaaattt taaatatgat      1920
     ttgctgcttg gtttagattt tcataagcta catawagtac atttaaattt tgcgaaagag      1980
     gagattactg tagatcagam aacttwgccg atggatccta tacaagtaac agatttaaak      2040
     ackcaagcag tmgaaactaa tgtaaaggaa tcaaagaaaa taattccggt aatttgtagc      2100
     cgagaccagt ctatcacaaa tagtacttgc aaaagaattg aagttgaata ccaaggggaa      2160
     atcaatccaa taaatatgat atacatgcac acaaatttag cagaattatc tctttatatg      2220
     ccaacaatcc tactcaggaa agaattttca gccaatttat acttgcccat tacgaatata      2280
     acagacaaaa agatacttct caaaaaagga actaaaatag cagaaataca tgttttagca      2340
     gatatcccca ttgaggaaac tagttttaca acagatcatg acattacaaa aaataaacag      2400
     gaatccaatt taccccagcc tacacacaca gacaaaagcc atttagaaaa acttttaagc      2460
     agaatacacc cagaagcacc ttcagaggaa aaagaggaaa tagctaaggt attaackgag      2520
     tatcaagacg ttttctccaa acctggagag atcggtttag taaattgcta caaacacaaa      2580
     attcaattaa ttgaaggggc aaaacctgtt aaaaaagctc catatagaaa gcctgcacat      2640
     ttkgagaaat tcgagagaga gacggtacaa gatttgttaa ataagggaat aataagaccg      2700
     tcacattcac cttgggctag tggagttgta attgttacag aaggtcataa aaattcagaa      2760
     ggtcaaaaat cgccaagatt agcggtggat tacagaaatt tgaattcgca aattcagcaa      2820
     gattcttttc cattattaaa cattcaaacc gtattagatt ggataggaag tcgtgcaaat      2880
     tttatttcag tgatggattg ttctaaggga ttctggtcta tcccacttga ggaggaatct      2940
     atcccactca cgagttttat ttgcagttct ggattatttg aatttttgag attaccattt      3000
     ggaattagca cgggaagtca agcaatgcag agagtaatct caattatatt atgtggctta      3060
     atgtgggaaa gtgttcttgc tttcatagat gatattattc ttgcggataa aaccatacaa      3120
     aatcatgtcc gccatttgag agccacttta gcacgcttcc gagaacawgg tatcaagcta      3180
     aatgtggaaa aaagctattt tttaaaacct aatataaaaa ttttaggtca tataatttsa      3240
     aaagagggaa taagtgctga tatgtccaaa gtttcagcaa ttttgaaaat tccaccacca      3300
     caaaaaccaa atcaacttaa agaattgcaa catttcttgg gatgtgcaaa ttatttcagg      3360
     agatacattg caaattattc aaccatctct gagcctttaa caaaattgac tcgtaaaaat      3420
     attccttata tttggggaac tgaacaagag caagcctttc aagctctaaa attccacctt      3480
     actaaccctc ctttacttgc attttatgac ccagacaggc caatacacat tcagtgtgac      3540
     gcctctggag tgggaatagg aagctgttta atgcaactaa gtgagaaagg tcacgaacaa      3600
     cctgttgctt atgccagtaa aaccttgaat gaataccaaa gaaggtataa caatactgag      3660
     cgagastttt acgccatata tcacgctttg cgagtakttc acccatatat ttacggaaag      3720
     aaattcaaaa tattcaccga ccaccaaaca atcacccaaa taaagtttgc ctcgcagacg      3780
     gaaaagacat cgaaccgtct taccacatgg gcattactac tccaagagca taactgtacc      3840
     ttaatgtaca gaaaagggtc tgagcagaaa atagccgatk ggcttagtag attgcccatc      3900
     gaggacccag aaaaattaga aattccaacc ctttgtttag aaakttcgca cmttttggag      3960
     cttcagcaac tagacaaaga atgccaagcg attctttcta gccttscaac tggttcaaca      4020
     aagttcaaaa taaaagacgg tattttgtat aatatttcac twggatatgc cagactagtt      4080
     gtgcccaaaa tcttgagaca agaaatttta aatgactttc actccatccc aatgtctgca      4140
     cacttgggac tgactcgttg ttatcaaaaa ttatmactca gattttactg ggaaactatg      4200
     aaatctgatt tatatgattt tattcaagca tgcgcttctt gcacaagcat taggcgaaat      4260
     tatgacaaat ttcctggatt attgcatcct attccagtac ctgaattccc tatgcaattt      4320
     atttccactg atattttggg tccattcaga cttacgaaag caaaaaatgt atatattatc      4380
     aatgcaattt gtttattcag caaatgggct gaatttagag ccattcctga tcaatcttca      4440
     caaacagtag taaaattttt gcatgaagct atcttttgta gacattccgc accgcaattt      4500
     ctcttatctg ataatggtaa gtcttatgtg tcaaatttat taaaaaccca cacagaatta      4560
     tatggtgtaa agcataaata tataacaccg tatcattctc ggggaaacgg attgagtgag      4620
     cgtttaaatt caacaattgg tagaatgatt gcacattttg tgaatcagca gcactctgac      4680
     tgggataaga aattacctga tttgcaattt gcatataaca cctcggttca agaatctaca      4740
     aaacaaactc cattcaaaat catttatggt agaaatccaa attatctttt tgattttaaa      4800
     gaaaatatca atgatccatc gtcaaaaatt gaattacaag aactgcgcaa acaagtcaaa      4860
     gcagttttaa aattagagca acaaagatat aaggaacgtg aggacgcatg gagaaagcct      4920
     gtttattacg agactggtca agttgttaaa ttaaagtatc ccaagaaaac aaagattatt      4980
     ggccaatcat tgaaatttat tcctcattat ttaggagaat ataaagtaat taagaaaata      5040
     aatgatttat catatgaagc taaatgttta aaaactgaca gaataattaa aacttcggtg      5100
     gaaagaatga gaaaattttt aatagaagat gacgatgagg tggaaaactt tcaatccgtc      5160
     tcattattaa gagaagaatt attaaatcca tgwagaatag taaaaaccgt aagcgagttg      5220
     aaattggaat cattttacga tcagcatgag cactttgttc aatatgttcc atttaaagtt      5280
     caatttaacc ccgacgtaaa taatttaaca taccaagata cttcactgct ggatttgack      5340
     gatttgggaa ttttgcctag tgtaaaagat caatttaaag accaggataa aatttacaaa      5400
     ttaattaaac atcagaatac taaacttcct gtttttcgaa tgattaaaac aagagaacaa      5460
     attgaagcat tttcaagtac catgaaaaca cataagctca tcatctgggg aactgatgat      5520
     gacattgtac agtttttatg taaatatgta atatacaagc atttgagtct acatttatat      5580
     ccatcaatca cttgcttttt agtacactta tcccagtata ttaaaatcaa taaatccaaa      5640
     ttagataaca tttttaaaga gattctggag gagataccgg wggataatgt tattatgcag      5700
     gatgatgatg atgatgagga aaatgatgac attcctaatt tctctcccag cccaagaaaa      5760
     agcaagsgta ttaaatatag gcccatttgg cattctgatt atcactttta tagttcacct      5820
     ctttaaaatg gccatctttt tcaactkcct ggtaccctct ttccttttcc aatatacctt      5880
     tatgcaaact cttcttattc aaccgaccca aggagaagta cckattcaag actattttat      5940
     caacatgaac awgaaggaca tccccatcat cctatgccga ggatacagtg aaggagtatt      6000
     gtggwggctt ccaccgaaaa tagaatgtcc attggtgaac ataacaaaac cctcaaaagt      6060
     gaccwtctgg tggcaggata taacaaagca atctatatcc gcctacgagt gttttaagga      6120
     gacagtttat gagaggaaaa gttacttctt ttttggtaca tatagtagtg agaaaaatac      6180
     taaacgtgaa actgtgagtg tgcacgattg tcataatatc gtgtataagg acattgctcc      6240
     aaatggacaa aaatttaaaa tgattgccga tggtctattc tggactggaa atacttaccc      6300
     ttcgcttgaa tatacatggc ccaagacaca agaagtgcta accgtgaact attttttcat      6360
     taatatgaaa atctccataa acaacgagga cgatacaatt attacaatga ctaaagtgtt      6420
     ggatacgtgc aaagctcaac aaggacattg ccctacacaa gatggtatat taatctggaa      6480
     atcggaggat gtggaccact gcagactggc tgaaggtgaa accacagatt gtttatacac      6540
     agacaatcgc atttcatgcc ccgctctcaa cctcgcaatt tccgatccta aaacaatttc      6600
     aatgtgcaaa cgaactatcg gctattccaa gcaaggatta atgttcaccc ccataaacaa      6660
     ttcagaagta gactttatca gcctgtctac gcacaagttt cgtgaagtgg tacaaggaaa      6720
     agtgaaagtg aaaagagata ttatgaaacc acttctcttt cccaaagtta agcttgatgc      6780
     gcaagtgaat ggagaattgc aatttttata cgatgcgcta cgtgatgatg tttcgtatgc      6840
     tttgcaaatt attcatcggg acacctgtaa aagccagcaa ttagaactcg aattggtcag      6900
     agctttggca gaatttggac aaagttcaat tacggttcgt gccttaactc gtgatggaag      6960
     atacagatct actctgcgtg gtgatgtttt aagtgtgttt aagtgcactg agatttggga      7020
     gtacatgttc ttgcggcaga caaattgcac gctcgagtac cccgtctcat acatgtacca      7080
     gcatcaaaaa cacgaaggat ggattcaagg actgagtcat gagatcgttc agtctccgac      7140
     aatgacatca tgccctgctc cagtatggct ctttgacatg ggaaataagg ttatacaact      7200
     ttccaatcac tcgttgcctg catcaactat tccttatttg ccttccccaa gagaaacagc      7260
     agaatatcca actattcgtg atttatcatt tgaccagact ggaatatatt ccttaaagca      7320
     aatatctgga gaaaccacta ttttagatct aatgcaacaa ctgcaagaga gaactcgcat      7380
     tagtgatcta attaaaacta aggaggaagg agcatcgttc aacacggagc aaatacgact      7440
     ctcacgatta attcaagata tcactctgga tcctattcgc aaatacttca acatcactat      7500
     taccatctgt attactttgc ttattgtcta cattctttac actttactaa aatttcatcg      7560
     tctccgttta ggaaacgaat tcccatttct cagaaatttg cctatttttg gccatatttt      7620
     tacaaatcaa gaaattcaaa ttgaaaattc ggctactgca cctaatgatt tgcttctttt      7680
     ttcaaatgaa actcaatctg attctgactc gctgacgcag gaatctagaa ttcaaatgga      7740
     accactcatc tcaaatcaat ctttggaagt aaatgccatc caatctgaat atcccaatgc      7800
     ttcactatat gcactaaaaa gagtgaaata ctaataaatt gatttctttc cagatccggt      7860
     tacgaactat gcatttctat atgactagta tatagttata aatattatac ttcttagttt      7920
     tacgtattaa ttatttcgat attatttaaa ttatttctct taatattatt aagtttaaga      7980
     tgggtaaaac acaagctaaa aatgaaaaac gtaggttaaa gagacttaga aatagaaatg      8040
     ataaattagc aaataagtta gaaattatac cttcaaattc tccaaattca caagaagtta      8100
     caaatcctat cacaattcac acaccagcag tatccttttc caacattatt tcatccgaca      8160
     aaatacaaat tcaatcccaa ttcacgcatc accacatctt tcaaaattat tacacctcaa      8220
     caaaatacac attcaatccc aattcacaca tcaccagtat cttcaaaaat tattacacct      8280
     caacaaaaca ctatttcaat ctcaattcgc acaccacttg tttcttcttc caatattaat      8340
     ttaccccaac aaaattgtcc ttccccacaa gcaaatacta caccgaatga attggacgga      8400
     ctagaaaaac tactggacga gagatacaac cagcaaaccc tttggctcct aaatcacccc      8460
     aatcccgagt taataataga cacacattcc acaacgtcaa tccttcaagc accgactagc      8520
     ccttctgaga aactgaatac tttatatgat aataaaattc catgtaaaat ttattatgag      8580
     aaaaatgaac taaaaatgca gaaaaatatt gagaaagaat caaaaaatat tattaatcat      8640
     aatgtagaat taggtaaatt gatgtttagt ataaataatt taaaaattga ttcttcaaca      8700
     aaagttaaaa aattattcac taatccattt tatggttatt cattccctac tagtattaaa      8760
     atatctaaac ctaaaaatgt gaaaaaatca aataaaaaac tattaaaagt gacaaataaa      8820
     attaaagaaa aacaagctaa gcaaaaattg ttagataaag aaatagttcg tacaattaaa      8880
     cttactgata gccacaatga taaaatcaaa cctaatttaa atggtaaaat tgacaaaaag      8940
     gttaaaataa aaaagaataa ttcatatatg tctagattta aaaaaggaaa atttatagaa      9000
     ttagaaaatc aaatgaatga aatttcaaat catttaaatt gtaaaaatgt tcaaaattta      9060
     gatgaacttc aacaaaaaat tgatcagtgt caaaatatta ttaataattt attatttcac      9120
     taaaaattaa attaaaaatt aaaattaaat tagaaggggt gagata                     9166
//
ID   Gypsy-2_FoCa-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-249
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2577-2577 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 249 BP; 76 A; 43 C; 44 G; 85 T; 1 other;
     tgttacaata gcgtctatac ctgtctaggt tgatttatgg cattagagat accctagttt        60
     tatgatccta gcctttaggt ataaatacgc ctccaaaatm tgtgtgagag gcagatgaga       120
     tttgtactta ctagcacacg gtttctacct ctggaacttg agctaggtaa atgttttaat       180
     aaatgcaact acataaaata taaaatgaat gcgttgcttt cttcatttat catcatctaa       240
     tgcgtaaca                                                               249
//
ID   Gypsy-2_HeAr-I repbase;    DNA;    INV; 4765 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4765
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5552-5552 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..4222
FT                 /product="Gypsy-2_HeAr-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MEHARPPAELSLEGGPANRADAWRKWLRQFQVFLKAS
FT                 GVHKEPSDVQASLLINLIGPEGYDIFTTFKFAADEDKDKLEKIVEQFNAHF
FT                 GTKSNTTMVRFKFFTRCQEIGESIDEYVTALKLLSQRCEFEQLEDSLLRDR
FT                 IVCGVKDTSVRDRLLRTDELTLEKAVKICQANEISNDGEKQIEGIKTEALK
FT                 SASVDTIWKGGRRDGRRSVRGASLSVESRRGRGAVGGGRGSGSAGAGLRGG
FT                 GDGGGAFADMRSVASGPGEAAGPSARACAACASVHCDSGERCAARKVKCFN
FT                 CGGKGHFKVMCPVRKSRKVYELYEDYDEDDKKDLYYISSLEYVDTIVQAEA
FT                 SKWYETLYLSYTGIEHRFKLDTGSDLNVLSKNDYIKLGLSMSNVIKDHTRA
FT                 KSFCGNFLSIIGSCIIKWMYKNVTYNLKFIISEQNCQSILGKDALEQIGLV
FT                 KRVFSLNLDNYKNLFRGLGKLPGTYTIPIESNASPCICPVRKIPLGVRDQL
FT                 KEELTRMERLGVIRKVHHPTSWVNGIVMAGKKDGSFRICLDPRPLNRVIRR
FT                 QHYPLPTLTEIATKLKGARYFSKLDAKSGFWMIQLDDKSADLCTFGTPFGR
FT                 YQYLRLPYGINSASEVFHARVRQLLEDLEGVDSFVDDVIVWGSTKEEHDER
FT                 LRSLLERANEVGIKFNPEKCEFGVNEVTYLGHRFSIDGMKIDQTKLKAITN
FT                 MPSPTDRSSLERFLGMVNYVSKFIPHYSEKVAPLRNLLKKDSEWCWGECEE
FT                 VVVSELKRALCAAPVLALFEPREPAVLSVDASARALGAVLLQAGRPVEFAS
FT                 MTLTDTQQRYAQIEKEMLAIVFALERFHQYIFGKNDVIVETDHKPLEALFK
FT                 KSLDSVPARLQRMMLRVQRYDFQVKYTPGKYMFVADTLSRAPLPDLLNNKV
FT                 SEELEEQTCFLIQNLRFSGGRLETVRVHTERDEECQTLINYVLNGWPINKY
FT                 NVKEIARPHWSYRECLEYVDGTLLMNNLVFIPKTLRSEMIERVHEGHLGID
FT                 RCKRRARDVMFWPGMSRDVERAVRACRVCSLHAPLPQREPIIAHHIPGLPW
FT                 AKIGSDIFEVNKKYFLILVDYFSNFVEVSPLTSISSKQVILAMRDQFARHG
FT                 IPQELISDNGPAYSSKEFRNFVENWGFKHSTSSPNYPQSNGRSERAVRTIK
FT                 GLISKSVHSNEDFYLSLLNYRATPRDGIASPAQLLMGRRLNTRLPCHHNKL
FT                 LPERDNTADYNNLIRNQIRSKSWYDSRARPLPELKVGDNVVALEGPRREYA
FT                 RVLRRAAQPRSYFVLDGAGRVLRRNRRHLVRVSSPDPEPSPATSSQQTTCE
FT                 DDVTQEDTGLNHSSSESECYDSCPELYDNVSPKSSVGQIQNKRTERAAARV
FT                 AKEKLKFMN"
XX
SQ   Sequence 4765 BP; 1366 A; 857 C; 1204 G; 1338 T; 0 other;
     tggtgacagc ggtgcgtgaa ataaattaaa taatcgtgta attggtggtt aaaagttgtt        60
     aatattgatt gtatttgctg tataaacata ttaatcatcg agtacaatgg aacatgcgcg       120
     accaccagcg gaattgagcc tggaaggagg gcccgccaac cgggccgacg catggcgtaa       180
     atggttacgt caatttcaag tgtttttgaa agcgtcaggt gttcataagg agccgtcgga       240
     tgttcaagcc agtttattga taaatttgat cggaccggag ggatacgaca tctttacaac       300
     gtttaaattt gcagcggacg aagacaaaga caaactagaa aaaattgttg aacaatttaa       360
     tgcccatttc ggtacaaaat ctaatactac catggtgaga tttaaattct tcacaagatg       420
     tcaagaaatt ggtgagagca tagatgaata tgtcactgct ttgaagctgt taagtcagcg       480
     ttgtgaattt gaacaactgg aggatagctt attgcgcgat cggattgtgt gtggggtcaa       540
     ggacacgagt gtacgcgata gattgctgcg gacagacgaa ttgactttag agaaggcggt       600
     aaaaatatgt caagcaaatg aaatatccaa cgacggtgaa aagcagattg aaggtattaa       660
     aacggaggcc ttaaaaagtg catcggtgga cactatttgg aaaggtggac ggcgagacgg       720
     ccgccgtagt gtcagaggcg caagtttgag tgtggaatca cggcgtgggc gcggagctgt       780
     cggcggcggc cggggcagcg gcagcgcggg cgccggcttg cgtggcggcg gcgacggtgg       840
     cggcgcgttt gctgacatgc gcagcgttgc aagcgggcca ggcgaggcgg ccgggcccag       900
     cgcgcgcgcc tgtgcggcct gcgcttcggt acactgtgat agcggtgaac gttgtgcggc       960
     gcgtaaagtg aagtgtttta attgtggtgg caagggccat ttcaaggtaa tgtgtccagt      1020
     gcgtaagtca agaaaggttt atgaactgta cgaagattac gatgaagatg ataagaaaga      1080
     cttgtactac atatcatcat tggaatatgt ggatacgatt gtgcaagcag aagcctcgaa      1140
     gtggtatgaa actctttatt tatcctatac aggcatcgaa catcgtttca aattagacac      1200
     aggttcggat cttaatgttt tatcaaaaaa tgattatata aaattaggtt tatctatgtc      1260
     gaatgttatt aaagaccata ctcgtgcaaa atctttttgc ggcaatttct tgtcaattat      1320
     agggtcttgt ataatcaaat ggatgtataa gaatgttact tataatttga agtttattat      1380
     atcggaacaa aactgtcaga gcatattagg taaagatgcc cttgaacaaa taggccttgt      1440
     aaaaagagtg ttttcattga acttggacaa ttataaaaat ttatttcggg gtctagggaa      1500
     attacccggt acttacacta ttcctattga gagtaatgcg agcccttgca tatgtccggt      1560
     cagaaaaatc ccattgggtg tgagagacca acttaaagag gaattgactc gcatggaaag      1620
     gttaggggtg atacgaaagg ttcatcatcc tacatcctgg gttaatggta ttgttatggc      1680
     aggaaaaaaa gatggtagct ttcgaatatg tctagatccg cggccactaa atcgagtaat      1740
     acgacgtcaa cattatcctt tgcctacatt gactgaaata gcgaccaagt tgaaaggtgc      1800
     gcggtatttt agtaaactag atgcaaaatc tggcttttgg atgatacagc tggatgacaa      1860
     gagtgctgac ttgtgtacat ttgggacgcc attcggccgg taccaatatt tacgtttgcc      1920
     atacggcata aattcggctt ctgaggtgtt tcatgctcga gttaggcagt tgttagaaga      1980
     cctggaaggc gtcgactcat tcgttgatga cgtcatcgtc tggggttcta ctaaggagga      2040
     gcatgatgag cgccttcgaa gccttctgga gagagccaat gaggtaggta taaaattcaa      2100
     tccagaaaag tgtgagttcg gtgtgaatga ggttacttat ttgggccata gatttagtat      2160
     tgatggtatg aaaatagacc aaactaaatt aaaggcgatt actaatatgc cgagtccaac      2220
     agatcgttca tcactcgaac gcttcctcgg tatggttaat tatgttagta aatttattcc      2280
     tcattattcg gaaaaggttg caccgttgcg taatttgttg aaaaaagata gtgagtggtg      2340
     ttggggtgag tgcgaggagg tcgtggtaag cgagttgaag cgtgcgttgt gtgcggcgcc      2400
     cgtgctggcg ctgttcgagc cgcgcgaacc cgccgtgctg tcggtggacg cgagcgcgcg      2460
     cgctctcggc gcggtgctgc tgcaggccgg ccgacctgtc gaattcgctt caatgacgct      2520
     cacggacaca cagcaaagat acgctcaaat tgaaaaggag atgctggcaa tagttttcgc      2580
     tttggaaagg tttcatcaat acatctttgg aaaaaatgat gtaatcgttg aaaccgatca      2640
     caaacctttg gaggctttgt tcaaaaagtc acttgactct gtgccggcta gacttcagcg      2700
     aatgatgctt cgcgtgcagc gttatgactt tcaggtaaag tatacgccgg gaaaatatat      2760
     gtttgttgcc gacactttat ctagggcccc gcttcctgat ttattaaata ataaggtatc      2820
     ggaggaactc gaagaacaga catgtttctt aatacaaaac ctaagattta gtggtggtcg      2880
     gcttgaaact gtaagggtgc atactgaacg agatgaggaa tgtcaaactt taattaatta      2940
     tgtattgaac ggctggccca ttaacaagta caatgtgaaa gaaatagctc gcccgcattg      3000
     gagctacaga gagtgtttgg aatatgttga tggaacgttg ttaatgaata acttggtatt      3060
     tattcctaaa acactcaggt cggagatgat agaacgcgtg cacgagggac atctcggtat      3120
     agacaggtgc aagaggcgtg cgcgtgacgt catgttttgg ccagggatgt cacgcgacgt      3180
     ggagcgcgct gtgcgtgcgt gtcgagtgtg ctcgctgcat gcacccctgc cgcagcgcga      3240
     gccgatcata gcacaccaca tacctgggtt accatgggca aagataggct cggatatttt      3300
     tgaagtcaat aagaaatatt tcttgatact agtcgattat ttttcaaatt tcgtggaagt      3360
     ttcgccgtta acaagtattt cttcaaagca ggtgatatta gccatgaggg atcaatttgc      3420
     caggcatggc ataccccagg aattgatatc tgacaatgga cctgcctatt cctctaagga      3480
     gtttagaaat tttgttgaga actggggatt taagcactcg acatcgtcac ctaattatcc      3540
     gcagtcaaac ggacgtagtg agcgtgcagt gcgaacaata aaaggcttga tatccaagtc      3600
     agtacattcg aatgaagatt tctatttaag cttgcttaat tacagagcaa cgccacgaga      3660
     tggcatagcg agccctgccc aattgctgat gggccgaagg ttaaatactc gtcttccgtg      3720
     tcaccataat aaactgttgc cagaaaggga caatacagct gattataaca acttgatacg      3780
     aaatcaaatt agaagcaaat cgtggtacga ctctcgtgcc cggccgcttc ctgaattaaa      3840
     agtaggcgac aacgttgtgg cgctggaggg gccgcgccgg gagtatgcgc gagtgctgcg      3900
     gcgcgcggcc cagcctcgct cgtacttcgt gctcgatggt gcgggcaggg tgctgcgtag      3960
     gaatcgtagg cacctagtga gggttagttc tcctgatcct gagccgtctc ccgcgacatc      4020
     gtcgcaacag acgacttgtg aggacgatgt cacccaggaa gatactggat taaaccattc      4080
     ttctagcgag tcggaatgtt acgattcctg tcctgaacta tatgataatg tatctccaaa      4140
     atcatcagtt ggccaaatac aaaataagcg aactgaaagg gcagctgcaa gggtagctaa      4200
     agaaaagtta aaatttatga attaattacc taaaccccca tatttaccta cttattatta      4260
     taatattaat tcattgaata atgtcttgat caggttgatg agtaggtatt aatatgttca      4320
     ttttgcatgt ttgcttataa ttgaaaccaa tttactttgt ggaaagaaaa atatatctat      4380
     tattgttgta tcgtacttct attattctat taatatttta gaatgtgtgt aattaattat      4440
     tatgtagata ttgttacact cttattttgt tttaagatgg ttgtaaacaa tatgagggat      4500
     atgataatta tatgtaacgt gtattactga ttcccatttt gagtgtaaaa gcgataaggt      4560
     aggtaattag gtatatatgt ataaataact tgcagtatta agtttaaatt aaaattgtat      4620
     tgcaactaaa tatagctcct attccttggg tcacatcatt gttactgtac ttacttatgt      4680
     ttttattttg ttgcaacttg tatggttact atttaagtat gctaagctca acctacatta      4740
     aaatgttatt gtttaaggag ggaga                                            4765
//
ID   Gypsy-2_HeAr-LTR repbase;    DNA;    INV; 82 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-82
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5540-5540 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 82 BP; 23 A; 10 C; 17 G; 32 T; 0 other;
     tgtagcatat ttaatattag tgaagttgag ggtgtctcga aataaatcag tctgtgtcaa        60
     gctatcttgt tgttttacta ca                                                 82
//
ID   Gypsy-2_HMM-I repbase;    DNA;    INV; 5892 BP.
XX
AC   CAEZ01010474;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_HMM_;
KW   Gypsy-2_HMM-LTR; Gypsy-2_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-5892
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01010474; Positions    6814   12705.
XX
CC   Positions [3027-3452] - Reverse transcriptase
CC   Positions [4644-5060] - Integrase core
CC   'GGAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1071..5060
FT                 /product="Gypsy-2_HMM-I_1p"
FT                 /translation="MESNGEYTPEEELPTQRTEGKEKRKRKFIRNTKHRKN
FT                 SSRRRESSRSSDSDSDSSNGKILRRRKIHKGVPKWYSKEMLKFINSCNKDK
FT                 NNSHSSSISTHFNVIPEFDPSSKFQNIHSWLKKVNECADIYNWDEKHTTHY
FT                 ALLKLTGLARKWFESLPTVVFSWTEWQLKLKKAFPNEQNYGMLLEEMLART
FT                 TRYNESLREYFYDKLSLLNRCEIKAKKATDCIILGILDKSIRNGAQVLNCQ
FT                 EPEDLLIFLSSQRSLIESTSRRSIPIRSSNVVTKSGESVITCFNCRNKGHF
FT                 YYQCSKPLTQCRKCHRIGHDNELCKFSPLIKYTESNSVEKKILTIATTNDN
FT                 NDKYIKEVDVNENKVTAYIDFGSECSLIREADAKYLNLQKDFSKLPVIKGF
FT                 GNSLVTPIFKSLVNLKLDEIETSIEVLVVDNDLMQTALLIGQNFTELDSVT
FT                 VFKDSNTLFFYKSPKSDVNLSLGNSLKLFVSNSTNVPASGLVEVKTSDCVF
FT                 SGDVYVEGHISNQPGKEYYLHQGVYRVCNGKCYLNIVNLSGNNLALAADSL
FT                 LARAMLFTESPIVSTNKIFKDVTALEPLRQSEIVVGPDVDIKTSERLYNLL
FT                 QLYRDCFALTLSEIGCTDAAEIKISLLDDRPVIYRPYRLSHSEREQVKEII
FT                 DDLLSNDIIQQSHSNYASPILIVKKKTGESRLCVDYRALNNKTKKDRFPLP
FT                 LIEDQLTNFSGYKYFTTLDLASGYYQIPIAKDSQPLTAFVTPDGHYEFKRM
FT                 PFGLTNAPAVFQRAMNNMLGSNRNESAMAYLDDILIPSTNVEQGFSRLEDI
FT                 LKILRKNGLTLKLSKCHFFDSSINYLGYEISVDGVRPNENKILAVKDFPIP
FT                 RNVHEVRQFLGLASYFRKFIKGFGEIARPLTTLLKKGIVFKWTEVESRSFI
FT                 LLKNCLITRPTLALYNPKFKTELHTDASALGVGGILMQWQNETFQGLKPVA
FT                 YFSRQTTQEERHLHSYELETLAIVSSLKKFRVYLLGLQFKIVTDCNALRTT
FT                 LTKRDLVPRIARWWLLISEFSFTIEYRPGTRMAHVDALSRNTTLSVDHDDN
FT                 STLLVYNIETSNWLLSLQMTDPDISRIIKILNPETDSEARDIKKNYILKNH
FT                 KVYRKVGESYCLVVPRDARWQICRANHDDVGHLGITKTTERIQKVFWFPKL
FT                 RRFVEKYVKACIQCAYNNNDKTHKRGLLHPIEKISVPFHTIHIDHLGPFVK
FT                 STSGNTYILTIVDGFTKYVFIRAVKNTKTNSTVRALQSIFLDFGLPCRIIS
FT                 DRGSSFTSHSFENFCSSHGIKHILNAVACPRANGQAERYNQTILNSLAKHN
FT                 IDSDERKWDTFLGKAHRG"
XX
SQ   Sequence 5892 BP; 1989 A; 887 C; 1138 G; 1878 T; 0 other;
     tctcagaagc gggatccacg ccacgttcca cgcaccataa agtgaggtac gtacaacaag        60
     aaaatggaaa tcaagctttc cactgctagc ttttgtagat attattgatc ggagagcttt       120
     tgattgaaaa tttagtcact ttaagagtta ttatgcattt tattagaata gtatgaagat       180
     aaagtatatt ttgtagaata gtgtgatgat gaagtatatt ttattagaat agtatgaaga       240
     taaagtatat tttatagaat actatgaaga ttaagtataa tttataaaat agtatgaaga       300
     ttaagtatat tttatagaat agtataaaga ttgatacacg gctaaggatg ccgtagatga       360
     attagtggtc agcgtgccac agaagaatgg ctagaatacc atagatgaat tagtggtcag       420
     cgtgccacag aagaatggtt agaataccat agatgaatta acggtcagcg taccgtagat       480
     gaattatcgg tcagcgtgcc gaagattgat gattgatatt atgtatttag agtaagagcc       540
     tgcttgctcg aggctggtgg tggcctcggt atgtcgggcg tagtagtaaa gtaaaacatt       600
     aagtaagcgc ctgctcgtga ctgatgattg cggcagtcag gcatagtgtg tattaattag       660
     tctttgtaag taatgtaagc ttaaattatt atgtttgttt attaatattg attattttag       720
     tattattatt attatttatt ttttttctct ctcctgattg attctgattt atttattgat       780
     attttgacgg tccattttaa atattttttg aatgacattt aaaagacaat gcttttgaat       840
     tgatttgttt taatgacatt tgttgcattt atttgaagga aatggagcct cattctgaga       900
     caaatttttg tatctttgat atttggactt ttgatttatt tgttgacatt ttgacatttt       960
     ttttaaaaaa aatattttgt aagattttaa gtacagttct gtgaattgac agttagaatt      1020
     tatttgattt tattcagtct taataacatt attgtgtgta tttgagggat atggagtcaa      1080
     acggtgaata cactccagaa gaggaactac ctacccagcg aactgagggc aaggagaaac      1140
     gaaaaagaaa atttataaga aatacaaaac ataggaaaaa ttcttctcga cggcgggagt      1200
     cgtcgaggtc ttcggattca gatagtgatt cgtccaacgg taaaatactt cggcgacgca      1260
     agattcacaa aggagttcct aagtggtatt caaaggaaat gttaaaattt ataaattcat      1320
     gtaataaaga taagaataat agtcatagtt ctagcattag tacacatttt aacgtaatcc      1380
     cagagttcga cccttctagt aaatttcaaa atattcacag ttggcttaaa aaggtaaacg      1440
     aatgtgcgga tatatacaac tgggacgaaa agcacaccac acattatgct ctcttgaaat      1500
     taacaggtct tgctaggaaa tggtttgaat cactccctac cgtagtattc tcttggacag      1560
     aatggcaact aaaattaaaa aaagcatttc ctaatgaaca aaattatggt atgcttctcg      1620
     aagagatgtt agctcgtact acgcgatata atgaaagttt acgtgaatat ttttatgaca      1680
     aattgtctct tttaaataga tgcgaaatta aagctaaaaa ggccactgat tgtattattc      1740
     ttggaatact cgataaatct ataagaaatg gtgctcaagt actaaattgt caagaaccag      1800
     aagacttgtt gatttttctt agctcccaac gtagtctaat tgaaagtacg tcacgtagat      1860
     cgattccgat acgatcaagc aacgtagtaa ctaaatcggg tgaaagcgtt attacatgct      1920
     ttaattgccg aaataagggg cacttttatt accagtgtag taagcccctc acacagtgtc      1980
     gtaagtgtca tagaataggt catgataatg aattatgtaa atttagtccg ttaataaaat      2040
     atacagaatc taattccgtc gagaaaaaaa ttttgacaat tgccactaca aatgataata      2100
     acgacaaata tataaaagaa gtagatgtaa atgaaaataa agtgacagca tatatagatt      2160
     ttggtagcga atgtagttta atacgagagg cggatgccaa atatttaaat ttacaaaagg      2220
     atttttccaa attgccggta attaaagggt tcgggaattc gttagtcacc ccaattttta      2280
     agagtttagt aaatttaaaa ttggacgaaa tcgagacttc aatcgaagta cttgtagttg      2340
     ataatgattt aatgcagacc gctttgctta tagggcaaaa ttttacagaa ttagattcag      2400
     tgactgtttt caaagatagc aatacgctct tcttttacaa aagcccaaag tcggatgtta      2460
     atttgagttt gggaaatagc cttaaattat ttgtttctaa tagtacaaat gttccggcat      2520
     cagggcttgt tgaagttaaa acatccgatt gtgttttctc cggagatgtg tatgttgaag      2580
     gacacattag taatcaaccg ggaaaagaat attacctaca tcaaggcgta tatcgcgttt      2640
     gtaatggcaa gtgttattta aatattgtca atctttcggg aaataattta gcgctagccg      2700
     ctgattcgtt attagccagg gctatgttat ttactgagag tcccatcgtt tctactaata      2760
     aaatatttaa agacgttaca gccttggaac ctttaagaca atcagaaatt gtagtaggtc      2820
     ctgacgtgga tattaaaact tcagaaaggc tctataattt attacagtta taccgtgact      2880
     gttttgcgct gactttaagt gaaataggtt gtacggacgc ggctgaaatt aagatatcgt      2940
     tattagatga cagacctgta atatatcgtc cttatcgctt gtctcactct gaaagggaac      3000
     aagtaaaaga gattattgat gacttactaa gcaatgatat tatacaacaa tcacattcta      3060
     attacgccag tcccatttta attgttaaaa agaaaacagg agaaagtcgg ctctgtgtag      3120
     attatcgcgc tttaaataat aaaacgaaaa aagatcgttt cccgttacct ctaatcgaag      3180
     atcaattgac taatttcagc ggttacaaat actttactac cttggacctt gcttcaggct      3240
     actatcaaat acctatagca aaagatagtc agccactaac tgcgttcgtg acgcctgacg      3300
     gtcactacga atttaaaaga atgccttttg ggttgaccaa cgccccagcg gtatttcaga      3360
     gggccatgaa taatatgtta ggatcaaacc gtaacgagtc agcaatggcc tatttagatg      3420
     atattcttat tccatctact aatgttgaac aggggttcag tagacttgaa gacattttaa      3480
     aaattttgcg aaagaacggg cttaccctta aactttctaa gtgtcatttt ttcgatagct      3540
     ctattaatta tcttggatat gagatttcag ttgacggtgt cagacctaat gaaaacaaaa      3600
     ttcttgcagt aaaagacttt ccgattccgc gaaatgtaca tgaggtccgc caatttcttg      3660
     gactggctag ttatttcaga aaattcatta aaggtttcgg tgaaattgct agaccattga      3720
     ctactttatt aaaaaaagga attgttttta aatggacaga ggttgaatca cgatcattta      3780
     ttttgctgaa aaattgtttg ataactaggc ccacgttagc tctgtataac cctaaattta      3840
     agactgaatt gcacaccgac gccagtgctt taggcgtagg gggaatttta atgcaatggc      3900
     aaaatgagac ttttcaaggt ttaaaacctg ttgcgtactt cagtagacag actactcaag      3960
     aagaacgaca cttacattct tacgaactcg agactttggc tattgttagc tcgttaaaaa      4020
     aatttagagt ctatctattg ggactacagt ttaaaatagt aaccgattgc aatgcgctta      4080
     gaactaccct aactaaacgt gatcttgtac cccgtatcgc aagatggtgg ttactaatta      4140
     gcgaattttc gttcacgatt gaatatcgac ctgggactcg catggcccac gtagacgcct      4200
     taagccgtaa tacgacatta tccgttgatc atgacgataa ttctactcta ttagtataca      4260
     atattgagac aagtaattgg ttgttgtcat tgcaaatgac tgatcctgac atttcacgta      4320
     ttataaaaat attgaatccc gaaacagata gcgaggctag agatataaaa aaaaattata      4380
     ttttaaaaaa tcacaaggtc tatagaaagg taggagaaag ttactgttta gttgttccta      4440
     gagatgcacg ctggcagata tgtcgggcaa atcatgacga tgttggtcac ttaggtatta      4500
     ctaaaactac tgagagaatt caaaaagtgt tctggttccc gaaattgcga cgctttgtag      4560
     aaaaatatgt taaggcttgt attcaatgtg catataataa taatgataaa acgcataaaa      4620
     gaggactttt gcatccaatt gaaaagataa gtgttccatt tcataccata cacattgatc      4680
     atttagggcc gtttgtaaaa agtacgtctg ggaacactta tatcttaact attgtcgatg      4740
     gtttcactaa atatgtattc attagagcag taaaaaatac taaaacaaat agtactgtaa      4800
     gagctcttca gagtattttt cttgactttg gcttgccttg tcgaattatt tcagatcgcg      4860
     gctcatcgtt cacatctcac agctttgaga acttttgtag tagtcacggt attaaacata      4920
     ttttgaatgc ggtagcatgt cctagagcga acggtcaagc cgaaagatat aatcaaacta      4980
     ttttaaattc acttgctaaa cataacatcg atagtgatga acgtaaatgg gacacgtttc      5040
     ttggcaaggc acacagggga taggtaaaca atacaattaa ttcgtctact cgaaaaactg      5100
     ctacggaagc aatgttcggt gtgagattta gggatagttt aagtaataaa atggatgttg      5160
     gtactgaatc tccagtagaa actttacggg atattagaaa tgaagtaagt tccaacatcc      5220
     aattaagtca aaataaacaa aaaatgaact acgacattgg tagaactcct gctactattt      5280
     ataaagaagg cgatcttgta aaaataacta gaactaattt ttataacaaa ggcaaaagca      5340
     cgaaacttat gtcaaagttt ataggacctt ataaagttgc tcaagtttta ggtaacgata      5400
     ggtatagaat cagtgaaata cctggtttta caaaacgtaa aaaaaaattt gaaagtgttg      5460
     tttcggcaga tcgtatcaga ccgtggataa atattgagtc atctgacaat gatagtagtt      5520
     ctaataaaag tggaacttta aatagcgttt cgtccgctga aaatagtgat aatagttaag      5580
     tccaaaaatt tatgtaatgg accgaatgta atgattttat atttatagtt ttaatacaat      5640
     ttataatttt acctctttgt ctagcttaaa aaaatattat atattgcgca ttttgtacta      5700
     gctcaagacg caatgattta attagttgta tatttgttga aactagtgtt gtcaagtagg      5760
     ctgcggcaat atcaatacat atgttatttg taatcgaccg aatgtaatga gtttataata      5820
     atacattgtt gattttaact gtttttgtga gtagtcgtgc attgggagat tgcacgaagt      5880
     cggatggccg aa                                                          5892
//
ID   Gypsy-2_HMM-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   CAEZ01010474;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_HMM_;
KW   Gypsy-2_HMM-I; Gypsy-2_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-320
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01010474; Positions    6494    6813.
XX
SQ   Sequence 320 BP; 117 A; 37 C; 55 G; 111 T; 0 other;
     tgtaatgatt ttatataaat agtttttata ttcacgataa tttgttatag aaaaatgtaa        60
     atcaacctgt ttgtttaatt aaaagatatt tttgaaaatt tatacataga acctaatacg       120
     aattgtcaat tgaaaaaggg acgcttaatg tggtcgattc tgatgtgcat tatgagactt       180
     ggagctgaag aggaaactgg tcctttgaaa taaaatattg tgctgtaatt caggaaaaat       240
     attgtacaag cctaatacta actagccctt gaagaaatat aagttctata aaaagcctcg       300
     aggtgtttga tttccttaca                                                   320
//
ID   Gypsy-2_LH-I repbase;    DNA;    INV; 3376 BP.
XX
AC   ADOQ01002428;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_LH_;
KW   Gypsy-2_LH-LTR; Gypsy-2_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3376
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002428; Positions     595    3970.
XX
CC   Positions [2451-2936] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           729..3290
FT                 /product="Gypsy-2_LH-I_1p"
FT                 /translation="MNQRTPVRCTMVQLKEKLRELKLSTVGNKAELLMRLR
FT                 EADPAGGWAIEDPEATGSSTIVHENQIESDSEEGSTIHERESEIQRREKEL
FT                 AEREIQMMRREIELLREMRQLYATNQGQIAGGENASRDVAKASISVIADLL
FT                 SYFDGSIGNFENWELQLKLLKTTYRLSDDYVRILIGMRLKGKAAEWFQSKA
FT                 KHIELSVDELLDELRDMYNHRPSKIKLRKQFEERMWNSGETFCQYVHDKVI
FT                 LANQVPIPEDEVVEYLIDGIPEARLRDQARIGQITTRASLLSAFEKVTLSD
FT                 RASVSGAGNAERRRRSNGDWRRRLNERGKDERKEAAGSETERRCFNCGQRN
FT                 HVAVKCPTKAEGPKCFKCNERGHVAAHCVRNQSVVSNVDASVNKRCDKYLK
FT                 SVSIGDCALIALIDTGNDICLMRDSSYIQLGCPRLELKEIRFRGVGTTGNS
FT                 TLGEFNTELTIDDHSYPILVRVVRDTLINQDLLVGTDFLNLVELEIKAGKI
FT                 VVRPLSEYISVDDNLPEILQIDLDFGKDDVDVSHVPEPKYKEKIKRFVREY
FT                 EPNKTREIDLKMSIIVKDDEPVYQRARRLAIPEKELANAQMNEWMRDGVIQ
FT                 PSLSDYASPIDAFSKFVWLYATKTTSTSEVLNKLRKQAFIFGNSRKIISDR
FT                 DTAFTSNDFSEYCKSENIEHSLVTTGVPRANGQVERVNRALIPLLTKLADP
FT                 NCNEWYRYLERAQLYMNVTLHQSIGTDPFRLLFGTKARLQDDPDIREFIEN
FT                 EWITTFQEERDALRDCAKENILKVQQENRRGYDKKRKAAVIYKKGDLVAIK
FT                 RTQLKPGLKLAAKFLGPYKVTRVLRNNRYLVQREGDHEGPYTTSTSSDNIK
FT                 S"
XX
SQ   Sequence 3376 BP; 1041 A; 630 C; 922 G; 783 T; 0 other;
     aactttgggg gcccctccgg gattgagatc gtgcgagacg ggattgagat cgtgcgagac        60
     gggattgaga tcgtgcgaga cggaatcgag atcgtacgag acgggattgg atcgtgtgcg       120
     acagaattga gatcgggatt agatcgtgca tgataagacc atacgcgacg ggataggatc       180
     gtgcgcgaga aaaaagattg tcaagttatt gtaaaaaccg ttgcgaacgt gagtgcaacg       240
     tgcgagtcga tccgtccgac caatcgcgcg agtacagcgt gcaagccgat ccgtccgacc       300
     aatcgcgtga atgcaacgtg cgagtcgatc cgtccgacca atcgcgtgag tgcaacgtgc       360
     gagtcgatcc gtccgaccaa tcgcgcgagt acaacgtgcg agtcaatccg tccgaccaat       420
     tgcgtgagtg caacgtgcga gtcgatccgt ccgaccaatc gcgtgagtgc gacgtgcgag       480
     tcgatccgtc cgaccaatcg cgtgagtgca acgtgcgagt cgatccgtcc gaccaatcgc       540
     gcgagtacaa cgtgcgagtc aatccgtccg accaatcgcg taaatacagc acgcgagtcg       600
     atctgtttgc cgagcgcgaa gagaaccgat cgcgtgagtc gagaggaaga aggacagtcg       660
     gtagagatag actgcgaagt cgtgagtgta acgattgcca taagtgatta ttaaccgtgt       720
     gcgctaaaat gaatcagcga accccagtga gatgtacgat ggtccagttg aaggagaagc       780
     tgcgagagtt gaaattgtca actgtgggga ataaggccga actgttgatg cggctacgtg       840
     aagcagatcc agccggtgga tgggcgatag aagatcctga ggcgacagga tctagtacca       900
     tcgtacatga aaatcagata gaatccgata gcgaggaagg atcaaccatc catgaacgag       960
     agagcgagat acagcgcaga gaaaaagaat tagcagaacg ggaaatacaa atgatgagga      1020
     gagagatcga gctgttaaga gaaatgcggc agctatatgc gacgaatcaa ggacaaatag      1080
     cgggaggaga gaacgcttct cgcgatgtcg ctaaggcaag catctcagtc atagcagatt      1140
     tactcagtta ttttgatggc agcatcggta actttgagaa ctgggagtta cagcttaaac      1200
     tgctgaagac gacgtatcgg ttgtccgacg attatgtcag aattcttatc ggcatgcgtt      1260
     taaaaggaaa ggcagctgaa tggttccagt cgaaggccaa gcatattgaa ttatccgttg      1320
     atgagctact ggatgagcta cgtgacatgt acaatcatcg tcccagcaag ataaaattac      1380
     gcaaacaatt cgaggaacgc atgtggaatt cgggcgaaac cttttgtcaa tacgtccatg      1440
     ataaggtcat tctagccaac caagtgccga tccctgaaga tgaggtggtg gaatatttga      1500
     tagatggaat accagaagcg agactacggg atcaggcgcg cattggacag attacgacaa      1560
     gggcatcgtt actgagcgct ttcgagaaag taacattgag cgatagagct tcagttagcg      1620
     gtgccggaaa tgcggagcgc cgacggcgga gcaacgggga ctggcgacga cgactgaacg      1680
     agagaggcaa agatgagcgg aaggaggcgg cgggcagcga gacggagaga cgttgtttca      1740
     actgcggtca gcgaaatcac gtggctgtga aatgtcccac aaaagcagaa ggtccgaaat      1800
     gttttaagtg caatgagcga ggacatgttg ctgcgcactg tgttagaaac cagagcgtag      1860
     tgagcaacgt tgatgcgagc gtgaataaaa ggtgcgataa gtaccttaaa agcgttagta      1920
     taggcgattg cgcattgatt gccctgatag acacagggaa tgacatttgt ctaatgcgag      1980
     atagttcgta tattcagtta ggttgtccgc gattagagct aaaagaaatt cgattccgag      2040
     gtgtgggtac aactggcaat tcaacgttag gagaatttaa tacggaatta acgatagacg      2100
     accattcata tcccattctt gtgcgtgtcg tgcgggatac acttataaat caagatctac      2160
     tcgttggtac tgactttttg aatttagttg agttagagat aaaagccgga aaaattgtag      2220
     tccgtccatt gtcagaatat atatctgtag atgataattt accggagatc ctccaaattg      2280
     atttagattt tggaaaagac gatgtcgatg tatcccacgt tccggaaccg aaatataaag      2340
     aaaaaataaa gagatttgtg cgagagtatg agccgaataa gacgcgagaa atagatctta      2400
     agatgtcgat aattgtgaaa gatgacgaac ctgtttatca gcgggcgagg cgactagcga      2460
     tacctgaaaa ggaattagcg aatgcacaga tgaatgaatg gatgcgtgat ggtgtgatac      2520
     aaccgtcgtt atcggactat gcgagtccaa tagatgcatt ttctaaattt gtatggcttt      2580
     atgcgactaa gactacgagc acgagtgaag ttttgaacaa actgcgtaag caagcgttta      2640
     tttttggaaa ttcacgtaaa ataatttctg atagagatac agcgtttact tccaatgatt      2700
     tttccgaata ttgtaagagc gagaacattg agcatagttt ggttacaact ggcgtcccaa      2760
     gagcgaatgg acaagttgag cgtgtaaatc gtgcacttat accgttgtta acaaagctag      2820
     cagatcccaa ttgtaatgaa tggtatcggt atctggaacg agcgcagttg tatatgaatg      2880
     ttactttgca tcaaagtata ggtacggatc catttcgttt attgtttggt actaaagctc      2940
     gtttacaaga cgatcctgat attcgagaat tcattgagaa tgagtggatt acaacatttc      3000
     aagaagaacg cgatgcattg agagactgtg cgaaagaaaa tatattgaaa gtgcaacaag      3060
     agaaccgtcg aggatatgat aagaaaagga aagcagcagt aatttataaa aaaggcgatt      3120
     tggttgccat taagcgaacc caattaaaac caggcttgaa gttggcagca aaatttcttg      3180
     gtccttataa agtgactcga gttttacgca ataacagata tttggtacaa cgagaaggcg      3240
     atcatgaagg accatataca acttcgactt cttcagataa cataaaatct tgattacctg      3300
     ttttgtcgga tgatgagtca gacagcgatt agaaattagg atattcgagg tcgaatatct      3360
     atgcagaatg gccgag                                                      3376
//
ID   Gypsy-2_LH-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   ADOQ01002428;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_LH_;
KW   Gypsy-2_LH-I; Gypsy-2_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-299
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01002428; Positions     296     594.
XX
SQ   Sequence 299 BP; 92 A; 44 C; 90 G; 73 T; 0 other;
     tgtagagtgt tagaattaag tgttagaatt aagaagcgcg cgtacgcgag cgcgtgcgta        60
     tgtaagactg ttgaatagat ttcgcgagcg gccgaagtgc ggcgcaatta ggatagagtt       120
     cggtgtgacg agtcctggag agaggacaca gagagaaaga gtgagagtca gagataagag       180
     tctgtgagtc agtgtgtgcg aaccgaagat ttgcgagacg ttaagacagc gaatactact       240
     tacgcgttgc attgagcatt aataaaagag ttttataagt tcttgtaata catcctaca        299
//
ID   Gypsy-2_LMi-I repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_LMi-I;
KW   Gypsy-2_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4438
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3363-3363 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3314-3799] - Integrase core
CC   'ACACT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..2891
FT                 /product="Gypsy-2_LMi-I_2p"
FT                 /translation="MSTGSSDEILRRLVEQQEVFATAIHAQNQVLQSLATA
FT                 LSSGSQPPSTPQVVSPPAPPLSYPPPFPAYDESVEEWDAYEKRLRQHFQAF
FT                 GWSDGTLCRALFLSWLSPRLYQLLCQLAPLQDPSPLSFDQMCGLFSQYYRK
FT                 RTHVIAARVEFYRCRKQPQQSYRAWAADLHGLSRRCHFVTDVHKESYADQM
FT                 VRDAIIRLAPDREVRERALLCENPSLSEVLNIAQSFEVSRAAGNQIEAWCE
FT                 VAEIQPTSSPLQAGSQRDDVVAAVRAQPRRQGDRPVARQRKLGPGGVQSRN
FT                 RKMLPSCPSCFVDHDRPDCPKRWSTCHQCHKKGHIASVCASKIQDSDAEMD
FT                 VNCVSAISVAPNKLFIDVTVFHKQLRMQVDTGAAVTLLNSKTYLDLGSPSL
FT                 LPVSRKLVSYNKQNIPILGQFSAPVTYKSVTRRLTFLVVNNAHTDNLFGLD
FT                 AFQGFGFTISDEVNIVSDQVPFPQLDSLCAEFSALFSAGLGCANNFQAHIT
FT                 LKPSARPRFFRARPVPIALRDHVKAELDRLEEAGVVKRIPSSEWATPMVIV
FT                 KKPSGRLRLCGDFKRSVNAQSIIDTYPLPRPDELLAKLAGGQYFSKIDLSD
FT                 AYLQVPLDADSQRLLVLNTPFGLYQYLRLPFGVASAPAIFQRFLEQLTLSV
FT                 PGCVNYLDDIVVSGPSADEHLRNLRALFTVLQEAGLTCNLEKCHFFQPSIT
FT                 FLGFEVSSEGSKPLRQNVSPVLALPRPTSVKDLQVFLGKVAYYHKFLPGAS
FT                 SIAKPLHDLLRKGTSFHWSSACEKAFCTLKELLQSAPCLVTYQPGLPLVLA
FT                 TDASQHGIGAVLAHKYPDGSERPIAFASKTLTPAQTRYSQIEKEALAIVYA
FT                 LKKFHVFLYGVKFHLITDHKPLVSLFHPSASLPDKAAHRLQRWALFLSRYN
FT                 YAIHFRPTSKHANADALSRLDQTQTLIRKNCCAFMLT"
FT   CDS           3254..4438
FT                 /product="Gypsy-2_LMi-I_1p"
FT                 /translation="MVTSCSLCAQHQASPRATFAPWPQPSQAWDRLHIDFA
FT                 GPFLNAYWLLVIDAFSRFPYVVRCLSTSATATVAALSRIFSIEGLPTTVVS
FT                 DNGPQFVSREFASFCNTRGIRHVLAPPFHPQSNGEAERFVRTFKTQLKKYV
FT                 ARYPSDVALDQFLSSFRFTPFGDKSPAELLHGRQPRTLLHLLHPSPGHSPM
FT                 SPSSRFRPGMAVWARGFGRRPKWIPAIVTRCRGRRLCDIRTEDGITARHHD
FT                 QLRLRVEDREPPITRPMLPHQSAPLTSPQAEERFLPLPASCLPQPGTDPGP
FT                 SPQGPIPLRVQPPPMLDSSPPDALLPLGPPSPSPGPGPEVEMETEPXSPVL
FT                 PYGLSGEGRRRCPRPKYFRPYATVPARNLSQSPTDDDVMDIARIRASPRGK
FT                 E"
XX
SQ   Sequence 4438 BP; 864 A; 1342 C; 1096 G; 1135 T; 1 other;
     tttggcgacg agtgcggtat ttttttctcc gcgcgttttc cgtctgaagt ggttgttcgt        60
     cttacacaat gtctactggt tcttccgatg agattctacg tcgcctcgtc gaacaacaag       120
     aggtttttgc aacggcgatt cacgctcaaa accaggtatt acaatctctt gctacagcct       180
     tgtctagtgg gtcccaaccc ccgtccaccc cacaggttgt ttcgcccccc gcgccccctc       240
     tgtcttatcc gccacccttt ccggcgtacg acgagtccgt cgaagagtgg gacgcttatg       300
     aaaaacggtt aagacaacat tttcaggctt ttggctggtc tgatggcacc ttatgtcgtg       360
     cgttattcct gtcgtggctg tcgcctcgtc tgtatcagct cctttgccaa ctcgcccctt       420
     tgcaggatcc ttcgccgctg tctttcgatc aaatgtgcgg ccttttttca caatattacc       480
     gcaaacggac tcatgtgata gcggcccgtg ttgagtttta ccgctgcagg aagcagccac       540
     aacagtctta tcgggcgtgg gccgcggacc tccatggttt aagccgtcgt tgtcattttg       600
     ttacggatgt gcataaagaa tcgtatgccg atcaaatggt ccgtgacgct attattcggc       660
     tcgcccccga tcgcgaggtt cgcgaacgtg ctctcctgtg cgaaaatcct tctctttcag       720
     aggtccttaa cattgcgcag tctttcgagg tttcgcgggc ggcgggcaac caaattgagg       780
     cttggtgtga ggtggcggaa atccaaccca cttcttcccc gttacaagca gggtcgcaaa       840
     gggatgacgt ggtcgcggca gtccgcgcgc agcctcgtcg ccagggcgat cggcccgttg       900
     cacggcagcg gaaactcggg ccaggcggcg tgcagtcacg caaccggaaa atgcttcctt       960
     cgtgtccctc ctgttttgtc gatcatgata gacctgactg ccccaagcgg tggtccacgt      1020
     gtcatcagtg ccacaagaaa ggtcacattg cttctgtttg tgcctccaaa atccaagatt      1080
     ccgacgccga gatggacgta aattgcgtct cagcgatttc ggttgcaccc aacaagctct      1140
     ttattgacgt cacggttttc cacaaacagt tgcgtatgca agtggacaca ggcgcggccg      1200
     tcaccttatt aaactcaaag acgtatttgg atctgggttc tccctctctc ttaccggtgt      1260
     cacggaaatt ggtcagttac aataaacaaa atattccgat cctgggacag ttctcggccc      1320
     ctgttacata caaatctgtc actcgtaggc tcacttttct tgttgtaaac aatgctcaca      1380
     cggacaactt gtttggtctt gacgcctttc aggggtttgg gttcactatt tctgacgaag      1440
     tcaacattgt ctctgaccag gtgccttttc cgcaactaga ctctttatgc gccgaatttt      1500
     cggcgctgtt ttcggcgggg ttgggctgtg ctaataattt ccaagcccac atcaccttga      1560
     agccctccgc caggccccgt tttttccgcg ctcggccggt tccgattgca ctccgtgacc      1620
     acgtcaaagc ggagctggac cgcctggagg aagctggggt ggtaaaacgc attccgtcca      1680
     gtgaatgggc gactcccatg gtcattgtaa aaaaaccgtc ggggcggttg cgcctttgtg      1740
     gcgatttcaa acgttctgtg aacgcccaat ctatcatcga cacttatcca ttgccgcgcc      1800
     cagacgagct tcttgcgaaa ttggcgggtg gacagtactt ctccaagata gatctctccg      1860
     atgcatattt gcaagtccct ctcgatgctg actctcaacg tctcttggtc ctgaacacgc      1920
     cctttggttt gtaccaatac ttgaggttgc ccttcggggt ggccagcgct ccagcaattt      1980
     ttcagcgttt cctcgaacaa ctcacactgt cggtgcccgg ttgtgtcaat tatctcgacg      2040
     atatagtagt gtccgggccc tcagccgatg aacatttacg caacttacgt gcgctgttca      2100
     cagtactgca ggaggcgggg ttgacgtgca atctggagaa atgccacttt tttcagcctt      2160
     ctatcacttt tttggggttt gaggtttcta gtgagggcag caagcccctc cgtcagaatg      2220
     tgtcccccgt gttggccctc cctcggccga catcagtcaa ggacctgcaa gtgtttttag      2280
     gaaaggtcgc ttattatcat aaattcttgc cgggggcttc atctattgca aaacccctgc      2340
     atgacctgct gcgcaaaggg acttccttcc attggtcatc ggcctgtgaa aaagcatttt      2400
     gcacattaaa ggagctgcta caatcggccc cctgcctcgt cacctatcaa cccggcctcc      2460
     cccttgtctt agcaacggac gcctcccaac atgggattgg ggcagtgctc gctcataaat      2520
     atccagacgg atctgagcga ccgatcgctt tcgcctctaa gacgctcact ccggcccaaa      2580
     ccagatattc gcaaattgag aaggaggctc ttgctattgt ctacgctctg aagaagtttc      2640
     atgtctttct gtatggcgta aaatttcatc tcataactga tcacaaaccg ctggtttctc      2700
     tctttcaccc ttcggcatca ctacccgaca aggccgctca ccgtcttcag cgttgggcgc      2760
     tgttcctatc tcgatataac tatgcgatac acttccgccc tacatccaaa catgcaaatg      2820
     cggatgcgct ctcccggctg gaccagaccc agactttgat caggaagaat tgctgtgctt      2880
     tcatgttgac atagccgctc agcaagcagt ggacggtttt ccaatcacag gtgccaaggt      2940
     ggctctggct agtgccgcag acccggtcct ccgcaaggtg atccgtttgg tccagcaggg      3000
     ctggcctgcg actccgccga aacgggcatc ggaccccctc agaaactact atgcatttcg      3060
     acaccgtttt tctgttgtgg atggcgtgct tctccttgat tctgaggatt cctctcctcg      3120
     ggtcgtcatt ccatcggccc tccgctcaga ggtcctcaag ctgctacacg ccgatcattg      3180
     gggggtatct cgtactaagg cattggcccg ccgtcatgtg ttttggccgg gtctggccag      3240
     cgacgtgtct cgtatggtta cctcgtgctc gctctgtgcg caacatcaag cctcccctcg      3300
     ggcgacattc gccccgtggc ctcaaccttc gcaggcctgg gatcgcctgc acattgattt      3360
     tgcgggcccc ttccttaatg cctattggtt gctggttatt gatgccttct ctaggttccc      3420
     gtacgtggtc cgttgccttt caacctcagc cacggccacg gttgcagcct tgtcacgcat      3480
     tttctcgatt gaaggcctcc ccactacggt ggtgtcagac aacggtcctc agtttgtatc      3540
     acgcgagttt gcctccttct gcaacacccg gggtatccgc catgtcctcg ccccaccctt      3600
     ccatccgcag tcaaatgggg aggctgaaag atttgttcgc acctttaaga cccagttgaa      3660
     aaagtatgtg gctcggtacc cttcggatgt tgccctcgat caatttctct catcctttcg      3720
     gttcaccccg tttggtgaca agagtcctgc ggaacttctc catggccggc agccccggac      3780
     tctgctccat ctcctgcatc cgagcccggg acattcaccc atgtctccat cttctcgctt      3840
     ccgaccaggg atggctgtct gggcacgtgg gttcggacgt cgaccgaaat ggattcctgc      3900
     catcgtcacc agatgccgcg gccgccgtct ctgcgacata cgcacagaag acggcatcac      3960
     tgcacgtcac cacgaccagc tgcgcctgcg tgtggaagat cgggagcccc ccatcactcg      4020
     gccgatgctc ccgcaccagt ctgctccact aaccagccca caggccgaag agaggttcct      4080
     gccattacct gcaagttgtc tgcctcagcc agggactgac ccaggtccct cccctcaggg      4140
     acctatacct ttgcgggtac agccaccacc catgctggat tcatctcctc ctgatgcatt      4200
     gctccctttg ggtccaccat caccatcacc aggtccgggg cccgaggtgg agatggagac      4260
     cgagccacma tcaccggtcc tgccatatgg gttgtcgggg gaagggcgcc gacgctgccc      4320
     gcgccccaag tacttcagac cctacgcaac ggtgcccgcc cgcaacctca gtcagagccc      4380
     aacagatgac gacgtcatgg acattgctcg catccgagcc tccccaaggg gaaaggaa        4438
//
ID   Gypsy-2_LMi-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_LMi-I;
KW   Gypsy-2_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-248
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3364-3364 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 248 BP; 55 A; 62 C; 80 G; 51 T; 0 other;
     tgctgtaagg cacagacaca gccgataaca tatgtcggga gtcggccgcg agagtgcgcc        60
     gcgggaaact gcggcaaacg ccagagcacg ccacgggcga gtcaatgaca taaacagtgc       120
     ggagttgtgc tccgcgccca gtgtgttgtt taccaggtac gagctcactt cgcgggtgtt       180
     cgcacagcca gtgcacgcca gtgttctgtg tagtagttgt gagagtggtg ttgtccgtga       240
     ttacaaca                                                                248
//
ID   Gypsy-2_MeUr-I repbase;    DNA;    INV; 4248 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4248
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3038-3038 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..952
FT                 /product="Gypsy-2_MeUr-I_1p"
FT                 /translation="MPVTPNVPGLPGAYYVTPSNPPTTSTSVTQHQDSKPS
FT                 TSPELASISITTRIPDFWTEMPRLWFAQFESVMTPQKQSDECKFHLVIAKL
FT                 GRETVHQVGDLLLSPPAEKKYETLKNRLLSIYEESVERQFQKLISEMELGD
FT                 QKPSQLLRKMSELARNSNVAEATLLSLWLQRLPASVRAVLMVSQDQKPENL
FT                 AAIADKIMENMKANEVSAVTCSTSLPVTELLDKINKLSLEVAELRTSRSNP
FT                 RRRPYRHGYRGRSTSRRRLPIAPIPNDKPYCYYHFRFRERARKCQEPCAWK
FT                 LQSENLQ"
FT   CDS           907..4062
FT                 /product="Gypsy-2_MeUr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSRTVCMEVTVGKLTIAVTEADVSAIFPSSRLSVTDR
FT                 KSGYRFLVDTGANISVIPRTRKAIQTSDYKLYAANGSEIKTYGEKLLELDL
FT                 GLRRPYKWTFVVADVKQPILGADFLTKHNILVDMRHQKLIDNITGLLTFGK
FT                 IVNYGTPSIKTINIQSPYFSILEKYPDITKPFCAKETPKHNVVHQIITDGY
FT                 PVHSKCRPLSADKYRRVKQEIEHMMETGVCRPSKSAWSSPIHVTTKKDGSI
FT                 RLCGDYRKLNAITKPDRYPIPRLLDFTYLLPKKVIFSRVDINRAYNQIPVQ
FT                 EVEKTAVITPFGLFEFPRMPFGLRNAGQTFMRFINDIMFGLDFIFCFVDDI
FT                 LIASSSEEEHREHLEEVFKRLSDHGITVNMDKCIFGSQELEFLGYKITPEG
FT                 ITPSPDRVKAIDEYPLPKTVRELKRFLGMLNFYRTSIPHAAKHQSTLNLYT
FT                 RGSKKRDNTTIAWTDESREAFRQCKEGLKNAIALCPPSPDAPLSIMTDASQ
FT                 TCVGAVLQQRVQNEWKPLAFFSKALSDTHQGYSTYDRELLAIYMSICHFQN
FT                 YIEGRELIIYTDHKPLCYNPKQKPAVSKDKISPRRLRHLDYILQFTSDIRH
FT                 LPGSQNPVADALSRVSQIDCPSNVDWTEIATHQESDPELPNLLTKCNLKWR
FT                 KVFLPNNKVLYCEESTRELRPYVPSMFRKQIFSTLHDVTHPGVRTTRKLIQ
FT                 KHYFWPGMNQNASTWAKQCLSCQRSKVHRHNITPLMSFPESERFEHIHIDI
FT                 VGPLPVSNENKYIITIIDRFTKWPEAIPVPEVNAMIVAKTLYEAWIVRFGC
FT                 PRRITTDQGRQFESCLFTSLAKLMGIKRIRTTSYHPQSNGMVERWHRVMKT
FT                 AIIARGNSTDWSDELPTVLLGLRTTIREDCSLSPAQMVYGGNIRIPGVFFQ
FT                 NTSNITSPDLFIEKLQRTISQIKPRERKLTSSQNTFVSKDMSSCNYVFIRI
FT                 DAVRKPLVAPYEGPYKVLEKHPKYFKIQINNRTAVISIDRLKPAFMLQQSE
FT                 VNEHQNKKSSEIRECNSHDADADTNPIPKRVTKSGRNVKPVVRFCY"
XX
SQ   Sequence 4248 BP; 1420 A; 932 C; 813 G; 1083 T; 0 other;
     ttggtgaccc cgacgaagac attccgattt tcaacgctca cttcaatcct caataatgcc        60
     agtcacgccg aatgtacctg ggctacctgg agcgtactat gtgacaccgt cgaacccacc       120
     aactaccagt acaagtgtta ctcaacatca agattcgaag ccatctactt caccggagct       180
     cgcatcaata tccatcacaa caaggatacc agacttttgg acggagatgc cgagactgtg       240
     gttcgcgcaa ttcgaaagtg ttatgacgcc acagaaacaa agcgatgagt gcaagttcca       300
     tctggtcatt gcgaaattag gccgggaaac cgtacatcaa gttggtgatt tacttctgtc       360
     tcctccagcg gaaaaaaagt acgaaacgtt gaagaaccgt ttactttcta tctacgaaga       420
     gtctgttgaa cgtcaatttc aaaagttaat tagtgagatg gaattaggcg atcagaaacc       480
     ttcccaactt ttacggaaga tgtcagaact agcgcgtaat tctaatgtcg ccgaagcaac       540
     attactcagc ttgtggttgc aacggttacc agcttcagtt cgagctgtat taatggtgag       600
     ccaagatcag aaacctgaga acctagctgc catcgcagac aagatcatgg aaaatatgaa       660
     agccaacgag gtgtcagcag tgacgtgttc taccagtctc ccagtcaccg agctactaga       720
     taaaattaat aagctttcat tagaagttgc agaattgaga acaagccgtt ccaatccacg       780
     cagacgaccc tatagacatg gttacagagg ccgttctact tcaaggcgca gactaccaat       840
     agcacctatt cccaacgata aaccctattg ctattaccac ttccgattca gggagagagc       900
     cagaaaatgt caagaaccgt gtgcatggaa gttacagtcg gaaaacttac aatagcggtg       960
     actgaggcgg acgtcagcgc tatattccca tccagccgcc tatccgttac cgaccgaaaa      1020
     agtgggtatc gattcttagt tgacactgga gccaatatct ctgtcatacc aagaactaga      1080
     aaggcaatcc aaacgagtga ctacaaatta tacgccgcta acggaagcga aataaaaaca      1140
     tatggcgaaa aattactcga attggatctt gggttacgcc gaccatataa gtggacgttc      1200
     gtcgtcgctg acgtcaaaca acctatacta ggcgcagatt ttttaacaaa acacaatata      1260
     ttagttgata tgcgccacca aaaactgatt gataatatta caggattatt aacgtttggc      1320
     aagatagtta actacggtac acccagcatc aagacaatta acatacagtc accatacttc      1380
     agcatcctcg agaagtatcc cgacatcact aaaccatttt gtgctaaaga aacaccaaaa      1440
     cacaacgtag ttcatcagat cataactgac ggatatccag ttcactcaaa gtgtcgaccg      1500
     ctctctgcag acaaatacag aagagtcaag caggaaatcg agcacatgat ggaaaccggc      1560
     gtatgccgcc catctaaaag cgcttggtcg agccctattc atgtcacgac aaagaaggat      1620
     ggatcaataa ggttgtgtgg cgactaccga aaattgaatg cgataaccaa acccgatcgc      1680
     taccccattc cacgactctt agattttaca tatctgctac ccaaaaaggt aatattttct      1740
     cgtgtggata tcaacagagc atacaaccaa attcctgtcc aagaagtaga aaaaacagcc      1800
     gttattactc catttggtct atttgaattt ccacgaatgc catttggatt acgcaacgct      1860
     ggtcaaacat tcatgagatt cattaatgac atcatgtttg gtttggactt catattctgt      1920
     ttcgtcgatg atatactgat agcttcatca tccgaagaag agcatcgaga acacctcgaa      1980
     gaagttttta agagactcag cgaccatggt attacagtta acatggataa atgtattttc      2040
     ggcagtcaag aactggaatt cttgggttat aaaatcacac ctgaaggaat aacgccttcc      2100
     ccagacagag taaaagcaat agatgagtat ccattaccta aaacagtacg ggaattaaaa      2160
     cgtttccttg gtatgttgaa tttttatcga accagtatac cccatgccgc aaaacaccag      2220
     tcaactctaa atctgtatac acgaggaagt aagaaacgcg acaacaccac tatagcatgg      2280
     actgacgaaa gcagggaggc atttagacaa tgcaaggaag gcttgaaaaa tgccattgca      2340
     ctttgtccac cctctcccga tgctccgcta tcaattatga cagatgcatc acaaacttgc      2400
     gtcggagcag ttctccaaca aagagtacag aacgagtgga agcctcttgc tttcttttca      2460
     aaggcgcttt ctgatacaca tcaaggctac agcacctacg acagggagct attggcaatt      2520
     tacatgtcaa tttgtcattt tcaaaattat attgagggac gcgaattaat catatatacc      2580
     gatcataaac cattatgtta taatcccaaa caaaaaccag cagtttcaaa agataaaata      2640
     tcaccgcgac gattacgtca cttagactac atattacagt ttacgtccga tataagacac      2700
     cttcccgggt cacagaaccc agtagccgat gccttatcgc gtgtatcaca aatcgattgt      2760
     cccagcaacg ttgattggac tgagattgca acgcaccagg aaagcgaccc cgaattacca      2820
     aatttgttaa caaaatgcaa cttgaagtgg agaaaagtat ttttacctaa taataaagta      2880
     ttatattgcg aagagtccac acgcgaatta cgtccttatg taccgagcat gtttaggaaa      2940
     caaatattca gtacattgca cgacgtcaca catcccggag ttcgaactac aagaaaatta      3000
     atacaaaaac attacttttg gcctggaatg aatcaaaatg caagtacttg ggctaagcaa      3060
     tgcttatcat gccaaagatc aaaggttcac cgccataaca taacaccctt gatgtcattc      3120
     cccgaatcag aaaggttcga acatatacat atagatatag tcggaccgtt gccggtatcg      3180
     aatgaaaaca aatatattat tacaataata gaccgattca cgaagtggcc ggaagccatc      3240
     ccagtaccag aagtcaatgc tatgatagtc gcgaaaacat tatacgaagc ctggattgta      3300
     agatttggat gtccccgtag aatcacgacg gatcaaggac gccagtttga atcatgtctg      3360
     ttcacatccc tggctaaatt aatggggatc aaaaggatac gtactaccag ttatcacccg      3420
     cagtccaacg gaatggtgga acgatggcac cgcgtcatga agacagccat catagcacgc      3480
     gggaattcca cagactggag cgacgaatta cccacggtac tgttaggctt acggacaaca      3540
     atcagagaag attgtagctt aagcccagct caaatggttt atggtggtaa catcagaatt      3600
     cctggcgtgt tctttcagaa tacaagtaat attacatccc ccgacttatt tattgagaaa      3660
     ctacaacgta ctatcagtca gataaaacca agggaaagaa aattaacatc atcgcaaaat      3720
     acatttgttt ccaaagatat gagctcatgt aactacgtct tcataagaat tgatgcagta      3780
     agaaaaccat tagtggcacc gtacgaaggc ccgtataaag tattagaaaa acatccgaaa      3840
     tattttaaaa ttcaaataaa caaccgaaca gctgttattt caatagatcg tctcaagcca      3900
     gcatttatgt tgcaacaaag cgaagtcaat gaacatcaaa ataagaaatc atcagaaatc      3960
     agagaatgca actcacatga cgctgacgcc gatacgaatc caatacctaa acgcgtgaca      4020
     aaatcaggtc gtaatgtgaa gcctgtagtg cgattttgtt attaatattt ttaattttac      4080
     ttatactaaa acttatttat actacctttt taaaaaagtg cttttactaa tattttattt      4140
     ggttattcaa taattttaca tgtatacttt atttcgtttt aattgacaag tgttcttttt      4200
     tcaaattgta tatttttcta atattttttt tttaaggggg gggagtat                   4248
//
ID   Gypsy-2_MeUr-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-215
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3055-3055 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 215 BP; 67 A; 55 C; 29 G; 64 T; 0 other;
     tgtggtagca taattataat gtcaatgcac tctgtttatg caacactgct cgatcgcaat        60
     aaaacaacac gcatattgca ttatgtttta catataaatt cagtatgaaa taaagtcttg       120
     tgcgcatcat tcgtctgttc cattcataca ctcccatctt gaacactgtg actatacctg       180
     ccacttagtc acaccataac acgcacaccc gcaca                                  215
//
ID   Gypsy-2_MoPha-I repbase;    DNA;    INV; 4423 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4423
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1088-1088 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..4370
FT                 /product="Gypsy-2_MoPha-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTEEAEHDGDCVSAEDETREDALRRMEIDFYIREKKL
FT                 AERELELARREISMLREQRRGNFDSGESESATVSGGAEEITPRTQPRTSIT
FT                 VIGDLLSDFDGVSSDVDTWEKQVRFIKTTYKLEDDYAKILIGMKLKKKAFE
FT                 WFHSKPEHVSMSFETILQKLKAMFCRHESRLTMRRKFEGRVWKREETFHEY
FT                 FHDKIIMGNRVPVDEDELLEHVIDGIPDVALRDQARIQGFASTDSLLKAFE
FT                 KITLRDRGVAGSSRRDGRGGGSARGDRREWTGEKESGGGRGDSGRGNTLAP
FT                 RRCFNCGSREHLSANCPDKELGTKCFECRKYGHIAAKCPKRNDSGKSVVAS
FT                 VSQVACKKYMKDVLMGSRVINALIDTGSDISIMRASEHALIGSPRLRASET
FT                 EFCGVGGCRASATGEFWTQIAIDGNTYPILIRVVPDAILHYGLLLGADFLS
FT                 KIEVNFKGDIISIKPICEETVDSETRPEIFTIDIQDVNAIDVSNVQDAEHK
FT                 RIITDLVESYQPSKTQDIDMTMTIILNDDEPIYQKARRLAQVEKEIVNAQI
FT                 DEWEKQGIVRPSTSEYASPVVLVKKKDGSSRLCVDYRALNKKIIKDRYPLP
FT                 LIEDQLDRLQDARVFSTLDLKNGFFHVRMDEASIRYTSFIVPDGQYEFLRV
FT                 PFGLCNSPAVFQRFVNEVFKSLIKQKIVLVYMDDLIVLSDNEHNGLRNLEI
FT                 VLEVASRAGLAINWKKCHFLQRRVEFLGYIIERGTIRPSERKTEAVKRFPE
FT                 PRDMRQVQAFLGLSGYFRKFIPKYSLIARPLSNLLRANTKFHFGAAERDAF
FT                 NRLKIVLSERPVLNLYRVGAETELHTDASMYGYGAILLQKNSEDRLLHPVY
FT                 YASGKTTPAEEKYTSYELEVLAIIKALKRFRIYLLGIKFKIVTDCRAFALT
FT                 MSKRDLCVRVARWALLLEEFQYTIEHRPGRSMIHVDALSRSPLPHCLVVTE
FT                 CEEGLLARLRKAQKEDNDLKIIFDAIERGESNGYAVRGGVLYRDADGDARV
FT                 VVPGAMRRQIVRRAHEQGHFGVSKTEALLRKDYWIVGLHAEVEKVVKNCVA
FT                 CILAERKHGKPECFLNPIEKGSVPLDTIHIDYLGPLPSTGKSYAHIFVVVD
FT                 GFSKFTWLYATKSASAADAIERLKKQSSIFGNPERIVSDRGSAFTSGEFGK
FT                 YCQSEGISHQLITTGVPRANGQVERVNRTLIPLLTKLSAPKPCEWYKYLDT
FT                 AQLYLNTTKHRGIGMTPFRALLGVHPRVRDNPDVRELLEKELLISFNDDRE
FT                 ELREQARRNIEKIQRENKATYNKKRKEPFVYREGDLVAIKRTQQGPGLKLA
FT                 HKFFGPYEVIRALRNHRYVVRKVGDHEGPLQTSSAADFIKPWLNDDEDISD
FT                 D"
XX
SQ   Sequence 4423 BP; 1285 A; 860 C; 1246 G; 1032 T; 0 other;
     tctttttggg ggctcgtccg ggatcggtgt ggatagattc gagcgacgca cgagtttgtg        60
     aattattgaa gttatatact gctctgtgaa gtaacgacga cgacggtgac agtgaggacg       120
     acggtgaaca ataagaatcg agacgttcga catgtctgag cataatactc tcaaagtaag       180
     cgaattgaaa gataaattaa aggcgtgtgg tttatcgacg gcgggaacga gggcggaact       240
     catcgcacgt ctcatgagct aacccgacga atttgacgat gacggaggag gctgaacacg       300
     acggagactg cgtgagcgct gaagacgaga cgcgagaaga tgcattgcga cgaatggaga       360
     tcgactttta tatacgcgaa aagaagcttg cagaacgaga gcttgagttg gctcgacgtg       420
     aaatctcgat gctgcgtgaa caacgacgag gaaattttga cagtggagaa tcggagtcgg       480
     cgacggtcag cggtggtgca gaagaaataa ctccccggac gcagccgcgg acaagcatta       540
     cggtgatcgg agatttgctg agcgactttg acggcgtgtc gagtgatgtc gacacgtggg       600
     aaaaacaagt aagattcata aagaccacgt ataaattaga ggacgattac gctaaaattt       660
     tgatcggcat gaaactgaaa aaaaaggcat tcgaatggtt tcactcaaaa ccggagcacg       720
     taagcatgtc gttcgaaaca attttacaaa aattgaaagc aatgttttgt cgtcacgaga       780
     gtagattaac gatgcggaga aaattcgaag gtcgcgtttg gaagagagag gagacgtttc       840
     acgaatactt tcatgataaa ataatcatgg gcaatcgcgt accggtggat gaggacgaat       900
     tgctcgagca tgtcatcgat ggcatcccag atgtagcatt acgcgatcag gcgcgcatac       960
     aaggatttgc atcaaccgat tcgcttttaa aagcatttga aaagatcacg ttgcgggatc      1020
     gtggtgttgc tggttcgagt cgacgagatg gacgaggcgg tggatcggcg agaggggatc      1080
     ggcgcgaatg gaccggtgag aaggagagcg gcggtggaag aggcgattct ggaaggggaa      1140
     acacacttgc tcctaggcgt tgctttaact gcggttcacg tgagcatctt agcgcgaatt      1200
     gtccggataa agaattagga acgaaatgtt ttgaatgccg taaatacggg catatcgctg      1260
     caaagtgtcc aaaaagaaat gattcgggaa agagcgtagt tgcgtcggtt tcacaagtgg      1320
     catgcaaaaa atacatgaaa gacgtgttga tgggctctcg agtcattaat gcattgatag      1380
     atacgggtag cgatatttca attatgcgag ctagcgagca tgcgctgata gggtcaccga      1440
     gattgcgagc atccgaaacg gagttttgcg gagtgggcgg ttgccgtgcg tcggctacgg      1500
     gagaattctg gacgcagatt gcgatcgacg gcaatactta cccgatactt attcgagtgg      1560
     tacccgatgc aattttgcac tacggattgc tgctcggcgc ggattttttg agtaaaatag      1620
     aagttaattt taagggagat ataatctcca ttaaaccgat ttgcgaggaa accgtcgaca      1680
     gcgagacgcg tccggaaatc tttacaattg acatacagga tgtaaacgcg atagatgtat      1740
     ctaacgtaca agacgcggaa cacaagcgta ttataacgga tttagtcgag agttaccaac      1800
     cgagtaaaac gcaagatatc gatatgacga tgacgatcat attaaacgac gatgaaccga      1860
     tatatcagaa agcgagacgc ttggcgcaag tcgaaaaaga aattgttaac gcgcagatag      1920
     acgagtggga gaagcagggt atagtccgac cttctacttc tgaatacgcg agccctgtag      1980
     tccttgttaa aaaaaaagac ggatcaagta gactttgcgt ggattatcga gcgcttaata      2040
     aaaaaataat taaagacagg tacccacttc ctctaatcga agatcaattg gaccgactgc      2100
     aagacgcgag agtttttagt actctcgatc taaagaacgg ctttttccac gtgcgtatgg      2160
     acgaggctag cataagatat acttcgttta tcgtgcctga tggtcagtac gaatttcttc      2220
     gggtcccgtt tggcttgtgt aattcgccgg cagtcttcca aagattcgtt aatgaagttt      2280
     ttaaaagtct aataaaacaa aagatcgttt tagtttatat ggatgacttg attgtgttgt      2340
     ccgacaacga gcacaatggc ttgagaaatc ttgaaattgt tttggaggtc gcgagtcggg      2400
     cagggttggc gattaattgg aagaaatgtc attttttaca gcgaagagta gaatttctcg      2460
     gatatataat cgagcgcgga acgatacgac catccgaaag aaaaactgaa gccgttaaac      2520
     gtttccccga accacgagat atgcgacaag tacaggcttt tctgggcttg agcggttact      2580
     tccgcaagtt tataccgaaa tacagcttaa ttgcgcgacc attgtcaaat ttattaagag      2640
     ctaatacaaa attccatttt ggcgcggcgg agagggacgc gtttaaccgg ctaaaaattg      2700
     tgttgagcga acgcccggtg ctgaatttat atcgagtagg cgcagagaca gagctgcata      2760
     ctgacgcgtc catgtacgga tacggagcga ttctcttgca gaaaaacagc gaagatcggt      2820
     tattgcaccc cgtgtattat gcgagcggaa aaacgacgcc ggccgaggaa aaatacacga      2880
     gttacgagtt agaagttctc gcgataatca aagcgcttaa gcgatttcgt atatatttat      2940
     taggaataaa atttaaaatc gtaacggatt gtagagcgtt tgcgctgaca atgtcgaaga      3000
     gggacctttg cgtgcgagtg gcgaggtggg cgttactatt agaggaattt cagtatacga      3060
     tagaacacag gcctggtaga agcatgattc acgtcgacgc ccttagtagg agtccgttac      3120
     cgcactgtct ggtggtaacc gaatgcgaag aagggttgct ggcgcgactg aggaaagcgc      3180
     agaaggagga caacgacttg aagattattt ttgacgcgat tgagcgaggg gaatcgaatg      3240
     gctatgccgt tcgaggcgga gtcctgtatc gggatgcgga tggcgatgct cgcgtggttg      3300
     ttccgggcgc catgcggcga cagatagtcc gaagggccca cgagcaggga catttcggcg      3360
     taagtaagac ggaggcgttg ttgagaaaag attattggat tgttggccta cacgccgagg      3420
     ttgagaaagt cgtgaaaaac tgcgttgctt gtattctggc ggagcggaag catggaaagc      3480
     ccgagtgttt cctgaaccca atcgaaaagg gcagcgtgcc gctggataca atccacattg      3540
     attatctggg tccgttaccg tcgactggaa agagctacgc acatatcttc gttgtggtgg      3600
     acggcttttc taagttcact tggctgtacg cgactaagtc agcaagcgcg gcggatgcga      3660
     ttgagcgtct gaaaaaacaa tcgtctatat tcggtaatcc cgaaagaatc gtgtccgaca      3720
     gaggatctgc gtttacgtcg ggagaatttg gaaagtactg tcagtcggag ggcatcagtc      3780
     atcagctgat cactacggga gtgccgcgag cgaacggtca ggtcgagcgg gtaaatcgta      3840
     ccctaatacc attgttgacg aagttatctg ctcccaagcc atgcgagtgg tacaaatatt      3900
     tagatactgc gcagttatat ttaaatacca cgaagcatag aggtatcgga atgacgccgt      3960
     tccgtgcatt attgggcgtg catcctcgtg tccgcgacaa tcctgacgtc agagagcttc      4020
     ttgaaaagga attactcatc tcatttaatg acgatcgaga ggagctgagg gaacaggccc      4080
     gaagaaacat agagaaaatt cagcgagaaa ataaggcaac ctacaacaag aagagaaaag      4140
     agccttttgt ctatcgtgaa ggagatttgg tggcgattaa acgcacgcag cagggtccag      4200
     gcctcaagct cgcgcataaa ttctttggac catacgaggt tatcagggcc ttgcgcaatc      4260
     atcgttacgt cgtgcgaaag gtgggcgatc acgagggacc tcttcagaca tcatcggcgg      4320
     cagatttcat aaagccctgg cttaatgacg acgaagatat ttcagatgat tagaataaga      4380
     ggaaacgcgc ggtcgggacg accgcttggt caggacggcc gag                        4423
//
ID   Gypsy-2_MoPha-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-254
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1166-1166 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 254 BP; 85 A; 48 C; 44 G; 77 T; 0 other;
     tgtaggaaat cagatttttg taaactcgag aatgttcgag tcgttagacg aaagcctgct        60
     ggctcaactt atacacaaat attgtattta ttgactcttg tatattgaag gagaatgact       120
     gcgaaaagca agtcagtcgt cctcgcgcct cgaacatagc tggaccaaca agaaatccgt       180
     tgttttgaaa taataaagaa tcttccttca taccgagacc cattatattt tatttaaaat       240
     cataaattcc taca                                                         254
//
ID   Gypsy-2_MSe-I repbase;    DNA;    INV; 4294 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4294
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 880-880 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4294 BP; 1271 A; 756 C; 1115 G; 1152 T; 0 other;
     gtggcgacga ggaaaattga gaacatattg tatgtaagtt atctcggagg aagggtatag        60
     cgtgttaaaa tgtcgattgg aaaggtatca aaattcgacg tacaaaatgg tacgtggtca       120
     acatatatag accgactgga aatgtatttc aaagtaaata atgtgaaaga agacatgagg       180
     ttaccaactt taattgctgt aatgggcgaa gaggcctatg aactattagt caatttatcc       240
     agtccgaaaa accctcagaa tccgagtacg aaaagtggtg gagcagatgc ggaatcatct       300
     gcaacccaca ccatcgcctc tagcggagcg ctataaattt aggcagagga gacaagaaag       360
     ccaagaaact gttgccgttt acgtggcgga attaaaaaaa atggcacgtt attgtgaatt       420
     tcgagcaaat ttgaacgaaa atttaagaga tcaatttgtc tgtgggatta aaagcgaggt       480
     gattcggcag cgtctatttg ccgaaaacgg tattctgtct tttccggaag cggtgatgtt       540
     ggcgagctca ttagaagcgg cggagagaga tgcggcggct gtgatggttc cgagtgcgga       600
     agtgacggaa tcaccgacga ctgcagagga aaagtgcact tactcgcgtc gcatgagcgt       660
     gcaaagaagg ctcgtggcgg tctttttgtt cacggaaata gcggatcgcg gacagggcac       720
     agagtccgca gcacaggttg tggccgatgc ggttctatag atcatggtaa tgtagactgt       780
     aggtaccgcg acttcgtatg cggaagatgc ggaattgttg gtcacttacg gcgaatgtgc       840
     cgatttgtcg cggcatcgaa gactcgagca agtgaaatac cagcggtggc aagatctcag       900
     ggtcgcacag gaatacacca cggccaagcc aatcaacggg aaaatgccga agagcaatcg       960
     gatgtagaag agaaccttca ccagttatgt ttaaataatt ataaggcggt gagtttgccc      1020
     atatccattg atggttgtac tatacaaatg gaagtagaca cgggttcagc tgtgtcatgc      1080
     attagtaaga gcacctatga tgcgtatttt aatcatctaa aactgaagcc gcacaagata      1140
     gtttttaatt tttataatgg tgtaagtata aaacccatag gggttattaa tccgctagta      1200
     cgttacaggg aacaaactaa acgattagag ttgtttgtag taaaaggagg tactacctca      1260
     ctcttaggaa ggcagtggtt aactgaacta catatcaaaa taccactatt taccaatacg      1320
     aatgtaaacc attgtaatgt tgatcggact cattttaata aagaaataaa cttattattt      1380
     gacagatata acaagctgtt tgatggacgt ttgggccgat tcactggctg taaggcgacg      1440
     ttgaaattac gggaatcggc ggtaccggtg ttccatcgtg cgcggccact gccttacgca      1500
     ctgcgcgacc gtgttgacgc agagttagac agaatgctgc gcgatggaat aatcgagcca      1560
     gtcgattgtt ccgactgggc gtctcctctg gtaccggtaa ataaagcgga tggctctctg      1620
     agaatctgtg cggattataa ggctactgtt aatcctatgc tatatgtaga taggtttccg      1680
     ttaccgagaa ttgatgactt attggtgcgc ctaggcgggg ctaaatattt ttctaagata      1740
     gatttatccc aggcctataa ccagatagag ttagatgaaa caaaaaaata tactgtgata      1800
     aatactcatc gcggcttatt tcagtataat agattagttt atggtctagc gtctagtgcg      1860
     ggcatttttc agcgcataat gtgtgaatta gtaaagggaa ttcctaatgt agaggtattt      1920
     ttagacgatg tgataatagg aggtagcaat aaggaggagc atttggccgc tttagaagca      1980
     gtgcttgaga gactttatat taaaggaatg aaattgaaaa ccgaaaaatg tgttttctta      2040
     gttgatgaag taaagtattt aggatacgtt ttacataagg acggcattaa aaccgaccca      2100
     gcgaaattgg aggcgattga taaaatacct agaccgagta atgttacgga gttgcgatct      2160
     tttataggac taattaactt ttacgcgaga ttcgtaaaga atatgagcac tatattagta      2220
     ccgctctacg aattattcaa aaagggcaag gtttgggttt ggtcggccga atgtgaacgt      2280
     tcttttagta aaattaagca gttaatgatg agtacagagg ttttagcgca ttacgaccca      2340
     aataagcctc ttattctgac ttgtgatgcg agtgcgcgtg gagttggagc ggtgctatcg      2400
     caaccggcgg caagcggggc gggagagcgc ccgatagctt atgtatcgcg cactcttacc      2460
     gacgcggaaa agaattactc tcaaatacat cgtgaagcgt tggcaataat attcggggtc      2520
     aaaagtttca ccagtatttg tatgggcgtc attttctctt gagaacggac cataagccgt      2580
     tggtatcgat cttcggccct cataaaggaa ttccaacgat ggtagctagt cgtatgcaaa      2640
     ggtgggctat cattttatct gcttatgatt ttgaaataga gtatgttagg tcggagagaa      2700
     atggtgccga cgggttgtcg cgtttaccga taaatagtaa gcaagatgtc actgtgccgg      2760
     aacaaactta tttgcatttt gttcaacagg ctttattgtt agattataaa gagttaaaac      2820
     tacagactag taaggatccg gttttatcga ggatattgag ttttttgcgc gatggttggc      2880
     caagagactg tgatatcgaa gagtttagac cttattttaa tcggaaagat gaactctatg      2940
     aagaattgag ttgcgtgttg tgggggcata gattattgat tccggtgaag tgtagggaaa      3000
     aagttttgag gatgctccat gagccccata tgggtatagt taaatccaag gctatggctc      3060
     gtagttacgt atggtggccc ggacttgatg aagaaataga gcgcatgtgt cgtagttgtg      3120
     agatatgtgc tgctcaggcg gatgctccgc cgcggcaaac tccgagtatg tggccgtggc      3180
     cgaatcatcc atggaccagg ctgcatttag atttcatggg gcccatattt gggaaaacat      3240
     acttgatcgt agtggacgct acatctaaat ggacggaact tttccatatg agtaatacaa      3300
     caggaccgaa ggtcatagat aagttatgtg aactttttag cagatggggc ctacccaagc      3360
     agatcgttac ggataatggg ccccagttta cgtgcaatga gtttggtagt ttccttaaat      3420
     ctaatggtat agatcacgtt ttttcggcgc catatcatcc ttcctcaaac ggtctcgcgg      3480
     aaaatgcagt gcgatcctta aagagggtta ttaagaaagc agtgcaggct aaggaagaag      3540
     ttgataaagc actttatact tatcttttac actatagaaa tactgcgcat tcgactacgg      3600
     gagaaagccc tgcaatgtta atgttaggta gacggttacg gacgaagtta gacgttttaa      3660
     ggccagacag ggagaatttt gtaaggaaag ctcagcaacg gcaaagtgga gctagaaaag      3720
     gggtacacag atctttcgat cagggtgaag aggtatggta ccgtcagtat ttgagtggag      3780
     acaaatgggt ctcaggcaaa attcatagat gtttagggaa tactgattac gagattgtag      3840
     gcagccgggg agagttagtt cacaggcata tagaccaaat taaaaggaag tttcataaaa      3900
     atgaaaacca aattaggaag gagaacgcta gtttatccct agcgattcca atgaaaaggg      3960
     tgtctcaact tcctagtgca ggattaaggt cagcactagg ttcagagcca gccactttat      4020
     catcggtgca ggggcagaga gtgtgcgatt ccgcaattca tactccggtc agtagaccga      4080
     tcgcgacgcg gtctccgtta gtggaacttc agggtagtgc caccccgcta tcacctgaat      4140
     ttcaggacgc cttaccgtat gagccaacga ctccacgtcc caggcaacgc cctattaggc      4200
     agtgtagatt aacaaacgtt cctgattata gaatgtgagg tattatcatt ttaagttgta      4260
     gagttgagtg ttttgttaat ttagtatgga ggag                                  4294
//
ID   Gypsy-2_MSe-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-127
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 871-871 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 127 BP; 38 A; 16 C; 22 G; 51 T; 0 other;
     tgtagtgtac tggctggtac gtttttctta atataatgtt ttgtttcaaa gaaatgtcag        60
     tttgtaaata aatggattcc gaagtacaaa ctcagaatat tatttccatg ttttctggaa       120
     ttctaca                                                                 127
//
ID   Gypsy-2_OrIn-I repbase;    DNA;    INV; 5349 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5349
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1543-1543 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..1557
FT                 /product="Gypsy-2_OrIn-I_1p"
FT                 /note="PHD finger at the N-terminus."
FT                 /translation="MAACNVCLGDITAEDFAKCAKCSRIFHFPCTRLLDKA
FT                 TFTKMNQERRAVWECDNCNRFKCLEKDLIKLQSSVDGNAKKNDESITALKT
FT                 EVGQLTSKINQILTLMKQIPPSEQTPTKTPIIPQITTPIKSPSPPEKIPRY
FT                 VEDKMSNIPVIKTDNVWTVLNFLDEIRKIDELSPEHFPTLIKRIAVNQTNL
FT                 ILKRLISETTDLSFKNVSKLILDNFTTPSTKAFLVSKKVYRPQRNFETFGD
FT                 YCEDVLKYSALLTSLSDAEKIDTILCNVNFYTSSRFQFGSKPKSIEELRSL
FT                 VQSVAKLEISASSFRPFSNKTRRFDKNYNKSYSDRTDKFQNKSPDEQKFQT
FT                 SPDKKTEWKKKHSTWNKNFGNPNSYQKNDNKKESQMSITKKTDSPQKEPDK
FT                 SKQNQTKPNDKKN"
FT   CDS           1551..4679
FT                 /product="Gypsy-2_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKLKSRVSISEESVINQITVSQLNNCLPILLESNKFL
FT                 ALVDSGASICCISQPTFDAIYAVIPSVAGRTLQRPVPVVVGDSSTILCKKG
FT                 VDLGIKIGNFTWKFHFLILESLPIDLVLGFNFMRFSEMILDPAESIISFKF
FT                 APNIKFPLFPKTDSRFHNLNRICTQENLLKFLLKKFPDTLTSRLGRTDVIQ
FT                 CSLRLKENSTLKPQRLVFPQGPEKSKIMREIVDKLLSDGVIERVSVDFASP
FT                 AFLVPKKPTPGKAKDFRLVVDYRKLNENLEYSYFPIPTIESAFLHLSKARY
FT                 FTVMDLNSAYNQIPLSPESRKLTAFSTPFGCFMYNRVPFGISLAGNVFSQL
FT                 MESIFGDLNHDFIFFYLDDICIYSSSWDDHVKHICVILERLEKANLTVNPD
FT                 KIQLATKKINFLGHTIQEGGISIDPDRINAVLSIPKPTTPKQVASFLGSVN
FT                 FFARFIPDLAIISRPLNALKKIKCDMIWTDQCQHAWESLRKRITSPPVLKT
FT                 PDFGNRFAVFTDGSSLGIAACLAQREDDSYRPIAYASRKLRGAEENYSAYE
FT                 LETLAVVFAFDKFHIYLEFAEFDLFTDHKALTSVISMQNKGGRHARIAARI
FT                 MSYRYKAHHIKGEKNSIADYLSRNPVDAFAESAEAICVLQRIPEVFQDLEE
FT                 AQLEDDSLRPIIDQLKSNIPVQNYSLSGNKLYFSISPSEKRVVVPKSFQHM
FT                 VFKYYHAELIGSHQGIARTLHKIRETFYFPKMREFVAVRVRRCLACQRAKP
FT                 EQNKPKGHLSSFTPTRPGEMLFVDLAGPLPLSNGFKYIFVAVDAFTSFSFL
FT                 FPIRNGNTSSVITCLREKIFNYFGFWTTVMTDNHSIFKAKSLHDFLFSHGV
FT                 KKEFQIPYYPNPSKAERCLRNLKPALIAYFGDNQTKWSANLPFFQMALNTA
FT                 VNSSTGFTPAELFLGRRLNTPLNLEWDVPVQGIGRTPQEMWSEALQNIGRA
FT                 KEKYGKIYNKKHDNVKLNVGDKVLVKTHILSDKAKKISAKLSYKFSVPHIV
FT                 ISKLSEVSYEVANESDPSKISRVHISQVKKVPQDVGS"
XX
SQ   Sequence 5349 BP; 1665 A; 1115 C; 994 G; 1575 T; 0 other;
     gttggtagca gagcatcctg tacatatttt gtatttaatc cacccctttg tgttttgtgt        60
     tgttttgata aaaaaaaaaa aaaaagagaa aagaaaaaat tttaattttt gtgaataatt       120
     ttgtgtgata attttcgtct ttccatgtct tatctacgtt gttattagcg ttaatcctcc       180
     catttttcca gtgaccttca ttttgatttt taaagatagc actttcgatt ttgattttta       240
     ctttcccttt ccattattta ttgaattttt ttttaaaacg taaatcctga acaaaaaaaa       300
     tttttttttg aaaactctaa acaagatttt cttaaaatgg ccgcgtgcaa tgtttgtctg       360
     ggagacatca cagcggaaga tttcgctaag tgcgctaaat gctcacggat tttccatttt       420
     ccatgcaccc ggttgctcga caaagcaacg tttaccaaaa tgaaccaaga aaggcgagcg       480
     gtttgggaat gcgacaattg taataggttt aagtgcttgg aaaaagacct tattaaattg       540
     caatcctcag tggacggaaa tgccaaaaag aatgatgaat ccatcactgc tttaaaaact       600
     gaagtggggc aattgacttc taaaataaat caaattctta ccttaatgaa acaaataccc       660
     ccttcagagc aaacgcccac aaaaaccccg ataatcccac aaatcaccac accgataaaa       720
     tcaccttcac cacctgaaaa aatccctcgt tatgtcgaag acaaaatgtc gaatatacct       780
     gtgataaaaa ctgataacgt gtggactgtt cttaatttct tggacgagat ccggaagata       840
     gacgaattgt cccccgaaca tttccctaca cttattaaac gaatagcggt aaatcaaacc       900
     aatctaattc tgaaaagatt aatttctgaa actactgatt tatcgtttaa aaacgtctct       960
     aaattgattt tagacaattt tacgaccccc tcaactaaag catttttagt ttcaaagaaa      1020
     gtttaccgcc ctcagcggaa ttttgaaact tttggggatt actgcgaaga cgtcctcaag      1080
     tactcggccc tcctcacctc gctttctgac gccgaaaaaa ttgatacgat cctgtgcaac      1140
     gtaaattttt atacgagttc tcgtttccaa tttggatcca aacctaaatc gattgaagaa      1200
     ctacgttctt tggtccaatc cgttgcgaag ctcgaaatat ctgcgagttc ctttcgacct      1260
     ttttcgaata aaacgcgtcg tttcgataaa aattacaaca aaagttattc tgatcgaacc      1320
     gacaagtttc aaaacaaaag ccctgacgaa caaaagttcc aaaccagccc ggataaaaaa      1380
     acggagtgga agaaaaagca ttcgacatgg aacaaaaatt tcggaaatcc taattcttat      1440
     cagaagaatg ataataaaaa ggagtcacaa atgtccataa caaaaaaaac ggattccccg      1500
     cagaaagagc ccgataaatc aaagcaaaat caaacaaagc cgaacgataa aaaaaactaa      1560
     aatcgcgggt cagtatctca gaagaaagcg tcataaatca aattaccgtt tctcaattaa      1620
     ataattgctt accaatcctt ttagaatcaa acaaattttt agccctcgtc gattcgggag      1680
     cctccatctg ttgtataagt caaccaacct ttgacgcgat ttatgcggtg atcccatccg      1740
     tcgccggcag gacgctgcaa cgtccagtgc cggtggtagt tggagattct agcactatat      1800
     tgtgtaaaaa gggagttgat ttaggaataa aaataggtaa ttttacctgg aaattccatt      1860
     ttcttatcct ggaatccctc cccatcgacc tagttttagg ttttaatttt atgcgctttt      1920
     cagaaatgat actagacccg gctgaatcaa taatatcctt taaatttgca ccaaatatta      1980
     aatttcctct ttttccgaaa acggatagcc gttttcacaa cttaaatcgt atttgtactc      2040
     aagaaaactt attaaaattc ttattaaaaa aatttcctga tactttgact tcgcgtttag      2100
     gccgaaccga tgtcattcag tgctctttac gacttaaaga aaattcgaca ctcaagccac      2160
     aacgattagt ttttccccag ggcccggaga aaagcaaaat catgcgcgag attgtcgaca      2220
     aacttttatc ggacggggtt attgaaaggg tttcagttga ttttgcctct ccggcttttt      2280
     tggtaccgaa aaagcccact ccaggcaaag caaaagattt tagattagta gtcgactaca      2340
     gaaaattaaa cgaaaattta gagtacagtt atttcccgat tccaactata gaatctgcct      2400
     ttttgcattt aagcaaggcc cgatacttca cagttatgga cttaaattcg gcttacaacc      2460
     agataccgtt gtcgccagag tcccggaagt taacggcgtt ttccacccct tttgggtgtt      2520
     tcatgtataa tcgcgtccct ttcggcattt ccttagcggg aaatgttttt tcgcaattga      2580
     tggaatcaat tttcggggat ttaaatcacg atttcatttt tttttactta gatgatattt      2640
     gcatctatag ctcttcgtgg gatgaccatg ttaaacatat ctgtgtcatt ttagagcgct      2700
     tagaaaaggc aaatttaact gtcaatccag acaaaattca acttgcgacc aaaaaaataa      2760
     attttcttgg ccatactatt caggaagggg ggatttcgat tgaccctgat cgcattaacg      2820
     cggttttaag cattccaaaa ccaaccaccc cgaagcaggt ggcgagtttt ctggggagcg      2880
     taaatttttt cgcgagattt atccccgact tggcgatcat ttctcgcccg ttgaacgccc      2940
     taaaaaaaat caagtgcgat atgatctgga cagaccaatg ccaacatgca tgggagtcat      3000
     taagaaaaag aatcacctcc cctcctgtgc tcaagacccc agatttcggt aatcgttttg      3060
     ccgtttttac ggatgggtca tcgttaggga ttgcagcctg tttggcgcag cgggaagatg      3120
     actcataccg acctattgca tacgcttcga ggaagttaag aggcgctgaa gaaaactata      3180
     gtgcctatga gttggaaact ctggcagtag ttttcgcctt cgacaaattc cacatttacc      3240
     tggaatttgc ggagttcgac ctcttcacag accacaaggc cctgacttca gtgatatcca      3300
     tgcaaaataa agggggacgt catgcacgaa ttgcagctcg aattatgagc taccgctata      3360
     aagcgcatca cattaagggt gaaaaaaatt ccatagcgga ctatctgtcg aggaatccgg      3420
     tggatgcatt cgctgaatca gctgaagcaa tatgtgtcct acagaggatc cccgaagtat      3480
     ttcaggatct tgaagaagct cagctggaag atgactcgct tcgaccgatt atcgaccagc      3540
     tgaaatcaaa tattccggtc caaaattatt ctttgtccgg aaataaactt tatttcagta      3600
     tttccccatc cgaaaaacga gtagtagttc caaaatcgtt ccaacatatg gttttcaagt      3660
     attatcacgc cgagctgatc ggctcacatc aaggtatcgc taggacgctc cacaaaatta      3720
     gggaaacctt ttattttccc aaaatgcgtg agtttgtggc agtaagggtt agaagatgct      3780
     tggcatgtca acgagctaaa cctgaacaaa ataagcccaa gggacatctt tccagtttta      3840
     cccccacaag acctggcgag atgttatttg tcgatctagc aggacccctt cccctcagca      3900
     atggttttaa gtacatcttc gtggcggttg acgcgtttac aagtttcagt tttctgttcc      3960
     ctatccgaaa tggcaatacg tcttccgtta tcacgtgcct tcgagaaaaa atttttaatt      4020
     attttgggtt ctggacgacc gtcatgactg ataatcactc gatttttaag gcaaaatcgt      4080
     tgcatgattt cctgttttcc catggggtga aaaaagagtt ccaaattcct tattacccaa      4140
     atccgagcaa agccgagagg tgtctgagaa acctaaagcc ggctttaatc gcatatttcg      4200
     gcgataacca gacgaagtgg tctgcgaacc tgccattctt tcagatggcg ttaaatacgg      4260
     ctgtcaattc ctccactggt ttcacaccag ccgagctttt cttgggaaga agattgaata      4320
     ccccattaaa cttggagtgg gatgtccccg tccaaggaat cggccgcacg ccacaggaaa      4380
     tgtggtcgga agcgttgcaa aatattggcc gagccaagga aaagtatggc aaaatttata      4440
     ataagaaaca tgataatgta aaactaaacg tcggtgacaa ggtcctcgta aaaactcata      4500
     tcttatccga caaggcgaag aaaatttctg cgaagctgtc gtacaaattt tcagtgccgc      4560
     atatcgtcat ctcaaagctt tccgaagtgt cgtatgaagt tgcaaatgag agcgatccct      4620
     caaaaatttc tagggttcat atctctcaag taaaaaaggt cccacaggac gtgggaagtt      4680
     aaattttgtc taaaagataa aatgtctatt tttgttcgat tttaaatttt aatgttaatt      4740
     tttgtgacta acaaagtgtt ttggcaacat atacctatta caaaaaaaaa aaaaaaaaaa      4800
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaagca ggaacctcgc tcaacctcaa      4860
     ttaatttttt tttctttttc cgaatttttt tttcctatag cttcaaagat ttaggttgct      4920
     tgtctggcac ctcgatggtt cgaggatcgt cgcgcgaccg aagaagctgc caatgaagga      4980
     acagacgatc aataattttc atcatcatta tttttttttt tttttttttt cactacgtct      5040
     tctaaatttt taaattttat ttttcaaatc acttttgatt ttcaaagtca tgtcaaaaaa      5100
     aaaaaaaaag aaaatttttt tttgttttac ctcacaattt tattttttag ccagttttgg      5160
     gcaaataatt taaaggtccc agttttgggc aaatatgtag tttaaacgtt ctttggcaac      5220
     attatgactt ctctattctc ggccattctg cccctcttgg ggcataacac ctctcgccgt      5280
     tgttacaccc ccactgggta cccgccgccc taggggggcg ccgtgctgcc gccttcgaga      5340
     ggggggtgg                                                              5349
//
ID   Gypsy-2_OrIn-LTR repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-345
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1527-1527 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 345 BP; 76 A; 67 C; 95 G; 107 T; 0 other;
     tgtcacggta ccccctgcac tgcccacgta acgtggggta gggtgcggta acggggcccg        60
     cggggtccct gaccggttta agagggggag ccccggagcg ggcaggcttg agagagttcc       120
     tgtcgaggaa ggacgttttt ctgtccgagc atccaaatat tttataaagg taaaaggtgt       180
     tgccaagggt gttggtgaag attttgatca agtgtaaatt tattttattt tttcattaaa       240
     tttcataaca gaggtatttg ttgttttttt ttatttatat tattttttcc ctaaattgtt       300
     gtccggccca taagtagctg ggccccagca cgctcaggcg tgaca                       345
//
ID   Gypsy-2_OsLi-I repbase;    DNA;    INV; 7093 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-7093
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2012-2012 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.1% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..5766
FT                 /product="Gypsy-2_OsLi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MPNGTADIPAGTSASGSTEGSRPISIRDAADIVPAFN
FT                 GRNIPVYQFAKSCFKAKNIISPNAEYGLVQLIKNKFYGQASRVVQNGDYDT
FT                 IEELIAVIKSRFAPLFTSMQLCGDMARMVQAPTEAVVDYGSRVSGLLIQIK
FT                 SCNEMEFPDQVERYNQSSETNTVRAFLTGLKQEVYSRMRNQNFDSLEDAIS
FT                 AAILAEAESIENLTKVKLSQGFITAEQCNNCYGYGHNTSVCCSQRFQRQST
FT                 SRAHWPAKYCQHCQRSGHTLETCWFKDQQGRPGVPQDFAQPNQAHKNQPMP
FT                 RQNRNWTQNRAPICEFCQNIGHTIQECRKKAYQERVKSQRLQQTPQVQQVR
FT                 KKANLYLNLGEINKSPSVELLSENFKNQKALFMVDTGSDINIIKKQAISNK
FT                 IAINTDIIFQLNGITKSSIYTTGYIKVKILETESIFHIIEELPIEQDGILG
FT                 TEYFKSSGASINYAKSILIVNNNIIPFKQPAVVIPSRTKTMIPIKVSNTEI
FT                 KTGFVPKLQLHPQLYMGNAVVTNRDGIAFLYAINVGAEDIEIEMPAVELQQ
FT                 YEEAPQDEDAVHQEPERAQKILKILQTDHLNQEEFANVEDIVKEHADRFYI
FT                 DGDKLPATNKIYHRIITTDEMPVNVKQYRYPHALKDEINHQVNDLLEKGII
FT                 KHSSSPFNSPLWIVPKKQDSQGNKLWRLVIDFRKLNEKTISDAYPLPNITD
FT                 ILDQVGSAKYFSVFDLKSSFHQTPMHPEDKHKTAFSTPFGHFEFNRMPFGL
FT                 KNAAATFQRLMNNVLDGLQGLELFVFIDDIVIYASSLQEHETKVNRMMAKL
FT                 REANLCLQPDKCQFLKKEVAYLGHIITEDGVRPDPAKVEAVQRFPIPKTVK
FT                 NIRQFLGLCGYYRRFIKDFSKIAKPLSDLTKKEQKFEWSSQQQQAFEFLRN
FT                 VLCEEPILQYPDFERPFNITTDASGTAVGAVLSQGEIGKDQPVAYASRVMN
FT                 KPETQYSATERELLAVIFAVNHFRPYIFGRKFYLITDHKPLIWLNSLTDPT
FT                 SRLMRWKLRLSEYDYEIKYKPGKQNINADALSRNPIEDINALQIHAKRLHS
FT                 STSGSKKKRKKKKEWHQYPTRPRQTTTTSESGKHKKRKEWHQYPTRPRQTT
FT                 TTSESREFKKKKESHQYPTRLRPTTTTESEEHKKKKEWHQYPRRPRPTTSS
FT                 SSRDIKKRKISHKHLTRPRDDSSEFETRKKYRKDRIRERSFSQEDNATKKR
FT                 VKEDYTSSDESQYYETDVSEEPPKPRKRTNLNPKIYSSEEIRKKRRPNEQQ
FT                 VIVEVHQPPQDRKYIIPQKRPINREPVIIGDEIEEYNEETIIPKHIFREPP
FT                 KIDSSSSTRGRSPVLKRKIDKETSSDTLSAPITPIKIKKEKNQPPKIKQIK
FT                 PKIISNKPIILKIEETEDHLWMKKGTAIIFLNKEGQPEDIQSRQFMENEKI
FT                 KISKPQSNIMQYKIKNRLIFGIIVESRETLPQKIKILHQILLQKGIQECSM
FT                 PNRQGLKAILQIVFADSNINITICKGTVQIPPKEERKNIIRENHESPVAGH
FT                 KGIRKTYLRIRNKYYWKNMKKEITDYVRSCISCQRTKLVRMKNKEPMVITD
FT                 TPSDAFDKVSLDILGPLPMTHKGYSYILTIQDNLTKYSVAVPLVSATSEDV
FT                 ARAFTNSFICQFGSPKAILTDQGTCFTSSLIKKLAKIFHIKTYRTSSFHPQ
FT                 SNGSLERSHHVLVEYLKHYISKQEHWDEWLQQAMFSYNTSVHEGTKFTPHE
FT                 LVYGKKARLPSKFIPSDRLDTYPDYVDKLLQNLHEIRQTAKINLEQSKYRQ
FT                 KYYYDRKIRPINYETGEEVMLLNPPRRSKLQKEYTGPYTVLRNIEKNNIEL
FT                 QIGPKKTRIVHKDRLKRAYRPIYSADQK"
XX
SQ   Sequence 7093 BP; 2786 A; 1413 C; 1319 G; 1575 T; 0 other;
     cgtaaatagt taagagaaaa attttggtga cagcggtggg attgttcgag tggtaatgag        60
     aaaatcgtat ctctgcggac attaatggtc aagcctagaa taaaataaag acagataaat       120
     aaaataaaaa aaaaaaaaaa aaaaaatata tatagcaggg tagatataga gagttgtaca       180
     tatatacata tattacatta ataagcaaac atcaagatgc ccaacggaac agccgatata       240
     ccagccggca catcagccag cggatcaacc gaaggaagcc gaccgatcag cattcgtgat       300
     gcagcggaca tcgtaccagc attcaacggc cgcaatatac ctgtttatca atttgcaaag       360
     agctgtttta aggcgaagaa tataatctcc ccaaatgctg agtacggatt ggtgcagctg       420
     atcaagaaca aattttacgg gcaagcttca agagtggtac aaaacggaga ctacgacact       480
     attgaagaat taattgccgt aataaagtct cgtttcgccc cgctgttcac ttcaatgcag       540
     ctatgtggcg atatggcaag gatggtacaa gcgccgaccg aggcagtcgt agactacggc       600
     agccgcgttt cgggactctt gatacagatc aagagttgca acgagatgga gttcccagat       660
     caggttgaaa gatacaacca atcctcggaa acaaataccg tcagagcatt cctgacaggt       720
     ttaaaacaag aggtatatag tcggatgaga aatcaaaatt ttgacagtct tgaagatgca       780
     ataagcgcag caatcctagc agaagctgag agcatagaga acctaacgaa ggttaaatta       840
     tcgcaaggat tcattacagc cgaacaatgc aacaattgtt acggatatgg gcacaatacc       900
     agtgtatgct gcagtcagag gttccaaaga caatccacgt cgagggccca ctggccagca       960
     aaatactgtc agcactgcca aaggtccggg cacaccttgg aaacctgctg gtttaaagac      1020
     cagcaaggaa gaccaggggt ccctcaggat tttgcgcagc caaatcaagc ccacaagaat      1080
     caacctatgc caaggcagaa tcgaaattgg acacaaaata gagcgccaat ttgcgaattt      1140
     tgccaaaaca tcggccatac gattcaagag tgccgaaaga aagcatatca ggagcgtgtc      1200
     aaaagtcaaa gactccagca aactccacaa gtacaacagg tacgtaagaa agcgaactta      1260
     tacctgaact taggagagat aaataagtct cccagtgtcg aactattaag cgaaaatttc      1320
     aaaaatcaaa aggcattatt catggtcgac acagggtcag acattaatat aattaagaaa      1380
     caagcaatct caaataaaat agctataaat acagatataa tttttcaatt aaacgggata      1440
     actaaaagct ccatttacac tacaggatac atcaaagtaa aaatactgga gacagaatcc      1500
     atcttccaca ttattgaaga attaccaatt gaacaagacg gaattttggg cacggaatac      1560
     tttaaaagca gtggagctag catcaattac gctaaatcta tattgatcgt aaacaacaat      1620
     ataataccgt tcaaacaacc agcagtagta ataccatcca ggacaaaaac catgataccc      1680
     ataaaggtgt caaacacaga aataaaaacc ggttttgtcc caaaactgca gcttcaccca      1740
     caactatata tggggaatgc tgtagtcacg aaccgggatg gcatagcatt tctatacgca      1800
     atcaacgttg gagcagaaga tatagaaatt gaaatgccag ctgttgaact gcaacaatat      1860
     gaagaagcac cacaagatga agatgcagtc caccaagaac ctgagcgagc ccaaaagatt      1920
     ctaaagatac tacagacaga ccatctaaat caagaagaat ttgccaatgt agaggatata      1980
     gtaaaagagc acgctgacag attttatata gatggagata aactcccagc aacaaataaa      2040
     atctaccata gaatcatcac aacggatgag atgcctgtaa acgttaagca atacaggtat      2100
     cctcatgcgt taaaagacga aatcaatcat caagtaaatg atctccttga gaaaggaata      2160
     atcaaacatt catcgtcacc atttaactcc cccttgtgga tagtacctaa gaaacaggat      2220
     tcacagggaa acaaattgtg gagattggtg attgatttcc gaaagctaaa cgaaaaaaca      2280
     atcagcgatg cctatccact acccaatatt acagacatcc tggatcaagt gggaagcgca      2340
     aaatacttct ccgtgtttga tttgaagtcc agttttcatc aaacaccaat gcatccagaa      2400
     gacaagcata agacggcatt ttcgacacca tttgggcact ttgaattcaa cagaatgcct      2460
     tttgggttga aaaatgctgc agctacgttc caacgtctga tgaacaacgt cctagacgga      2520
     ctgcaaggac tggaactatt cgtgttcatc gatgacattg taatttatgc aagttcgtta      2580
     caagaacacg aaaccaaagt caataggatg atggcaaagc tcagagaagc aaacttatgc      2640
     ttgcaacctg acaaatgcca atttctgaag aaagaagtag cgtacctggg tcacataatt      2700
     acagaagacg gtgtaagacc tgacccagca aaggttgaag cagtccagag gttccccatt      2760
     cctaagactg tcaaaaacat tagacaattt ctgggattgt gcggatacta cagacgtttt      2820
     attaaagact tctctaagat agccaagcca ttatccgacc tgacgaagaa agaacaaaaa      2880
     ttcgagtggt ccagccaaca gcagcaagcc ttcgaattct tgagaaacgt actatgcgaa      2940
     gaaccgatcc tgcaatatcc agactttgag agaccattta atataaccac tgatgcatcc      3000
     ggaacagcgg taggagcagt cctaagtcaa ggagagatag gaaaggatca gccagtagct      3060
     tacgcctcaa gagtaatgaa taagccggaa acgcaatatt ccgcaacaga gagagaatta      3120
     cttgctgtaa tatttgcagt aaatcacttc agaccatata tatttggcag gaagttttat      3180
     ctaattacag atcacaaacc attgatctgg ctaaatagtc tcacagatcc tacatcgaga      3240
     ctcatgcgat ggaaattgag attgagcgag tacgattatg aaataaagta caaaccaggc      3300
     aaacaaaata taaacgctga cgctctttcg agaaatccaa tcgaagatat aaacgccctg      3360
     caaatacatg ctaagaggct gcattcgtct acgtctgggt caaaaaagaa gcgtaagaag      3420
     aagaaagagt ggcaccaata tcccactcgc cccagacaaa cgacgaccac ttcagaatcg      3480
     ggcaaacaca agaaaaggaa agagtggcac caatatccca ctcgcccaag acaaacaaca      3540
     accacgtcag aatcaagaga attcaaaaag aaaaaggaat cacaccagta tcctaccaga      3600
     ctcagaccaa caactacgac tgagtctgaa gaacacaaaa agaagaaaga atggcatcaa      3660
     tatcctagaa gaccaaggcc aacaacttca tctagttcac gggatattaa gaaaaggaaa      3720
     ataagccata aacatttaac acgaccacga gacgattcct cagaattcga aacaagaaaa      3780
     aaatatcgga aagacaggat acgagaaaga agtttttctc aagaggacaa cgcaacaaag      3840
     aaaagagtaa aagaggatta tacaagctca gatgaatctc aatattatga gacagatgta      3900
     tctgaagagc caccaaaacc aagaaaaaga acaaatttaa atccaaaaat atattcctct      3960
     gaagagatca gaaagaaaag aagacctaat gaacagcaag tcattgtaga agtacatcaa      4020
     ccaccacagg atcgaaaata tatcattcca cagaaaagac ctataaatag ggaaccagta      4080
     ataattggag atgaaataga agaatacaac gaagaaacaa ttataccaaa acacattttc      4140
     agagaaccac ctaaaatcga ttcttcttca agcacaagag gaagatctcc agtactaaaa      4200
     agaaaaatag ataaagagac ttcaagcgat actctatcag ctccgattac acccatcaaa      4260
     attaaaaaag aaaaaaatca accaccaaaa attaaacaaa taaaacccaa aataatcagc      4320
     aataaaccaa ttatattaaa aatagaagaa accgaagacc atctatggat gaaaaaaggc      4380
     acagcaataa tatttcttaa caaagaagga caaccagaag atatacaatc aagacaattt      4440
     atggaaaatg aaaagattaa aatttctaaa ccacaaagta acatcatgca atataaaatc      4500
     aaaaatagat taatttttgg aataatagta gaatctagag aaacattacc acagaaaatt      4560
     aaaattcttc atcaaatatt actccaaaaa ggaatccagg agtgcagcat gccaaataga      4620
     cagggtttaa aagcaattct ccagatagtc tttgcagact ctaatatcaa catcactatc      4680
     tgcaaaggaa cggtccaaat tccacctaaa gaggaaagga aaaatataat tagggaaaat      4740
     catgaaagcc cagtcgcagg acataaaggt atcaggaaaa cttaccttag aatcaggaac      4800
     aagtattatt ggaaaaacat gaaaaaagaa attaccgatt acgttagatc ctgtataagc      4860
     tgccagcgaa ccaagctagt aaggatgaag aataaggagc caatggttat cacagacact      4920
     ccttcagacg cattcgataa ggtgtcccta gacattcttg gacccttgcc aatgacacat      4980
     aaaggataca gttacatcct cactatacag gataatttaa ccaaatactc cgtcgcagtt      5040
     ccacttgtat cagccacatc cgaggacgtc gcaagagcat tcactaattc attcatatgc      5100
     cagttcggta gtcctaaagc tatcctcact gatcaaggga catgcttcac atcctcgcta      5160
     atcaaaaagc tagccaaaat cttccatatc aagacgtacc gtacatcatc cttccatcct      5220
     cagtcaaacg ggtccctgga aagaagccat cacgttctgg ttgaatattt aaaacactac      5280
     atatctaaac aagaacattg ggacgaatgg ctacagcaag caatgttctc atacaacaca      5340
     agtgttcacg agggaacaaa attcacacct catgaactgg tttatggaaa aaaggcaaga      5400
     ttgccatcaa aatttatacc atctgacaga ttagatacat accctgacta cgtagataaa      5460
     ctattacaaa acttacatga aattagacaa accgcaaaaa taaatctaga acaatcaaaa      5520
     tatagacaaa aatactatta cgatagaaaa atacgtccaa ttaattatga aacaggagaa      5580
     gaagtaatgc tcttaaatcc accaagaaga agtaaattac aaaaagaata cactgggcca      5640
     tacactgttt taagaaacat agaaaaaaat aacatagaat tgcagatagg tcccaaaaag      5700
     actaggatag tacacaaaga tcgactaaag agggcctatc gaccaatcta cagcgcggat      5760
     caaaaataaa agtcgatacg acaatctata taattttcgg aacatacgca tgcgcagata      5820
     cagaatttta aacctaccgc catattgcgc atagaacgca aaaaaagcaa ggcacacgaa      5880
     aaagagacgc tactgaaatt tttattacta taatataaaa aaaaaaggga aaaagttaga      5940
     aaaagatgga tctgaacgag gtagaacata ttttaaatat aaacttatgc aagaaagtaa      6000
     aactttttct ttttattgta gtttgaagaa attgggcaat atatcttgga cgctgtctgt      6060
     atccgcgaca tcggcccagt tttcaataac aatttggcgc acagaattgg ccgaacatgt      6120
     atcgactgtg catttaaaat ggtcccggaa gcgaaggaga tgtggttctt tatgggatgg      6180
     cacaaccatg tatccaaaaa tacagatatc aactatatcc actgcataat atgcagaaaa      6240
     gtgctatgca ggatgagacc agcagcctcc tgcactagct gcagaagtag actattcgca      6300
     gccgacaatg aacataagga aacctttcgt gaaggattta ttttgccgac tctagaccct      6360
     aacatttttc cattaaagga tgttgttgtg caaaatgaag agtacagagt cattactcat      6420
     aattaatatt aatccatgtt ttctttcttt tataaaatac tttattcatt taaatatata      6480
     tataattatt tttcttctat aaacgagtga atttatttat ttcaaaactc acgaaccata      6540
     tttatttcgt tcgatttatt aatgcgcaga atcgcaagtc cgccatatta gcatagaaag      6600
     agatagaaac aaagagcgac aaagaaagct atacaaggcg acgctacgca cgcaccgcta      6660
     cattcaattt ataaagagcg aaaatggtgc gacgcgcagg acgacgcgaa cgtttaaaaa      6720
     gattaagaag agcattaaaa cagttcagag aggtagaatt atacttttaa taatttattt      6780
     catttattaa ttatttgttt tctacaaaat tttcaaagat gccagagcaa aaagaaatga      6840
     taatagtaga agaaaaagca ccactaccac gatggaggtt aattacaatc gacataccag      6900
     aattcgactg gcaagcatac agacggttac aaaaagagga ccctagaagg aaacatggaa      6960
     aagttattcg ctactttgga gtcctatcag catccccaag gaacagcaaa gagaaatgcc      7020
     gctgcgccct ttgccatctc agaagatgca atcacagtct cttgaggaca agagacaaac      7080
     gcacggggga agc                                                         7093
//
ID   Gypsy-2_OsLi-LTR repbase;    DNA;    INV; 1238 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-1238
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2022-2022 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.1% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1238 BP; 367 A; 235 C; 254 G; 382 T; 0 other;
     tgtaacgacc cgttaagaag acccagcacc tttttcattt cgttgttgtt gttatgattt        60
     atttttggtt taaatattgt acaaaatagt taagttaatt tttacgttta attgaattta       120
     taaaaaagta attagtttga tttgtattat acttcttata ataaataaat ttcatttaat       180
     cgataatata gtctgattga ataagtcgat aagcgataag tcgataagca attagtcggt       240
     aagtcggtcg gtaaatagat tatcgataaa tgatcgacaa acgaatgcat acgcgccagc       300
     gcaaccccga tgatctcgcg gtggggtgaa attctagagt agggtgaccg cgtagactaa       360
     ggagcagggg tgctcggccg tcacgtgatg gggaattcca gaaattcaaa ggaaccctat       420
     aataaaaaaa aacgctaagt cagcagaatc tgactataaa tagaggcgtt ccacgcagag       480
     ccagatcaga tcttccctgg cttcggtcag atgcagacaa tactctggaa gtagaggaaa       540
     agcttgcgct gaattgccta ggcaactata gagcgcgaga ttagctctat ccttctcttt       600
     cagtagcgac gtacgagagt tcggatctgt ggacacccta ctcatggtac gcaacgtgtt       660
     gaacacgtgc taatactaag ccacacgttc aagtgtaaag agctagcgag gagcggagct       720
     ccttgagcag gcctgtatta gcatagctct ggctagacca gaaaccgatt gcgacctgta       780
     ggtatagtcc gctcgtgtcc gaaggtatca tacaagctac tagaatatag ttttccagta       840
     cttagtgtaa cttggcaaat tgtacagagt attggctgta ttcgaagatc aagtcgcgtt       900
     aatcatatat tttgcactgt atctgggcgt acctattata atttcttatt gtatttcatt       960
     atctagggcg tacctattat aatttcttat tgtatttcat tatctagggc gtacctattg      1020
     ttatacttaa tattatactt acttagagca attatagtta atttacttac ttaaataaaa      1080
     gataattttt agtttgatac attaatgttg gatttcactc cttaaccgca caccacacga      1140
     acctataatc ccaattctca ttcatacgag tcgccttctt ggggaaccgc tctccctata      1200
     cgtcggtgca gtgacgtacc tatcactggg tcgttaca                              1238
//
ID   Gypsy-2_PBa-I repbase;    DNA;    INV; 7664 BP.
XX
AC   ADIH01017344;
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   24-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PBa_;
KW   Gypsy-2_PBa-LTR; Gypsy-2_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7664
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to RU (16-SEP-2011).
XX
DR   Genome; ADIH01017344; Positions    9110    1447.
XX
CC   Positions [4399-4608] - Integrase core
CC   'GCAC' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           968..2491
FT                 /product="Gypsy-2_PBa-I_1p"
FT                 /translation="MTYGRTRDDVRNSRDPAHTFMKLKEACDMIPEMDGSS
FT                 RNQVQKFLNASTYAMSEINPADEKSLLKAILCTKLTGKAMHDFQTRDIRTF
FT                 MQLKREIEMCYLAKRSTTHIQREFNITCQKPGESAREYGLRVDKLAMELYQ
FT                 SMIEGREHTAEQRKAILDTIQELALENFQLGLRDEIQTIVRSRNYTNLTAA
FT                 MLGATAEEKLKGSQPIKMYNNEKAKSNQEQYRNRNQKLECHKCGRLGHLAR
FT                 DCRSSRYTNKYPLPRAERPANVNNIEKYCLFCKKAGHKRDECWSLNGHPRK
FT                 RQPRRTRQDNEKGRQINIAVIMRKNKQQRGSDNLSFTSSGDDEEEEKPRTK
FT                 ITRTVREHQVTQVNTPHTNATLDLITLPMRETKKGKTSFLLDTGVTLTLIK
FT                 VGNLKGNTLMREERLALTGVTGHKIHTLGKIRATITLGDREIRHTMYVVRD
FT                 DFPINYEGILGLDFLNKQQAKCDHGKKQVRIGNTTFKLYPYKKTMLTPPSE
FT                 TIIQAPIGIALE"
XX
SQ   Sequence 7664 BP; 2936 A; 1674 C; 1606 G; 1448 T; 0 other;
     tttctggtgg cagcggtggg atcgtttcgc agctacatcc agtcatctgg aaggaacaaa        60
     cgatcggaat tcaaggaaaa ggccggaaaa gaagtcgaca tccctgcggc gagaaagagc       120
     cggtagccac aacgcagagc atatcagtga caccggagaa gccacgacct atcgccagcg       180
     ccacgtcaca aacatgcgaa ttgcgagcgt aatgtaagtc atagaaaatt aaggcaagcg       240
     cattagatag cgagagaagc gtgtaggtaa atgtcgaacg agagagttaa ccaaactcct       300
     gcccaaagaa acacgtcgtg gctacatagt gcgtcagcca gccgagcgct caacccgagc       360
     cctccgagcc tcgagcagac ggaaaattca cgcgatccgc gcgataacgt acgccgcgat       420
     ttaagtaatt attattctga cgatagtctg acgagtcaac cgaaattaca gccaaacatt       480
     gtaattgaac gcgtgttttc gcttagtgac atagataata tcctactacc gagtagtgag       540
     agacgcgacg acgctctatt acaaccaaca gacgcaagat ctgactatag cgacggcacg       600
     aacgcaagta accctagtcg cggagaattc tcattgacat cttacgatag tagcatgttc       660
     gatccaaccg aattttacac cgcctcacga aacataattc cagcggaaat ggcaaatcaa       720
     ccctcacacc gttaaaatcg atcgcggaag aacaacaagt agtaaacaaa gaattggacg       780
     acgaagtaaa aaggatgaga gccactttaa gccaggcaaa ctgaaaatct gacccggaat       840
     cttcgtacga cgcgcgagat gcaatgttgg tcgagttgat agaaggcatg cgagcactac       900
     aggccacata agccaactag aagtcgttaa ttacgatcgg agtgcagaaa atgacgaacc       960
     gatagaaatg acatacgggc gtacacggga cgatgtccga aattcacgag atcccgcaca      1020
     tacgtttatg aaactaaaag aagcctgcga tatgattccg gagatggacg gatcatcgcg      1080
     gaaccaagtt caaaaatttt taaacgcaag cacgtatgcg atgagcgaaa taaatcctgc      1140
     cgacgaaaaa tcattattaa aagcgatctt gtgcacgaaa ctaacaggga aagccatgca      1200
     cgatttccaa acaagggata tacgcacgtt catgcaactg aagcgcgaga tcgagatgtg      1260
     ctatttggca aagcgtagca ctacgcacat tcagcgagag tttaatataa cctgtcaaaa      1320
     acccggggaa agcgcgcgag aatacggact ccgcgttgac aaactagcaa tggaactcta      1380
     tcaatctatg atagaaggac gcgagcacac cgcggagcaa cgaaaggcaa tcctagatac      1440
     gatacaagaa ttagccttag aaaattttca actaggatta cgtgacgaga tacaaacaat      1500
     agtacgatcc aggaactata cgaatttaac agccgcgatg ctaggcgcga cagccgaaga      1560
     aaaattaaaa ggtagccaac ctataaaaat gtacaataac gagaaagcta aaagcaacca      1620
     agaacagtat agaaaccgca accaaaaact ggagtgccac aaatgcggta ggctaggaca      1680
     tttggcgcgc gactgtcgtt caagccgata cacaaacaaa tatccgctac cgcgagccga      1740
     acgaccggcg aacgtaaata atatcgagaa atactgcttg ttctgcaaaa aggcaggtca      1800
     taagcgcgac gaatgctggt cactgaacgg ccacccgaga aagaggcagc cgagacgcac      1860
     gagacaggat aatgaaaaag ggcgacaaat aaatatcgct gtaataatga gaaagaataa      1920
     gcagcaaagg ggaagcgata acctatcgtt cacaagcagt ggcgacgacg aagaagaaga      1980
     gaaaccgaga acaaagataa cgcgaaccgt acgcgagcat caagtgacac aggtgaatac      2040
     gcctcacaca aacgctacgt tagacttgat taccctgccg atgcgagaga caaaaaaggg      2100
     aaaaacaagt ttcctcctcg atacaggcgt cactttgaca ttaataaaag taggaaatct      2160
     aaagggaaac acactaatgc gcgaagagcg tttagcccta accggagtta cgggccacaa      2220
     gatacacaca ctcggaaaga taagagcaac gataacgcta ggagaccgag agatacggca      2280
     cactatgtat gtggtaagag atgacttccc aataaattat gaagggatac tgggactaga      2340
     ctttttgaat aaacagcaag cgaaatgcga tcatgggaaa aaacaagtcc gtattggcaa      2400
     cacaaccttc aaactctacc cgtacaagaa aaccatgcta acgcctccca gtgaaaccat      2460
     aattcaggca ccgatcggaa tagcattgga atagtaaatg cagtcgaaac caaacccgga      2520
     gttttcatag gaaattgttt ggtcatacca gaagaaaacg tatgtccaat aagtgtgata      2580
     aataccacgg gagaatccgt ggagataaca acgccgctag tcacggtgga cgagataaag      2640
     acaaaagacg ccgcacacat gtataccatg gaggtgtcaa gtaacgaaac aagcgacgag      2700
     cccattcaag ctcgtaaaga aaaattgcac agacaaatgc gaaccgagca tttaaataaa      2760
     gaggaaaaga aaatcttgca ccagatttac gaagatttct gtgatatctt ccacctagaa      2820
     aacgaccgcc tatcgtacat taacgcagta gcacatgaaa taaatacgcg agcagatagc      2880
     gcgccggtga atgtccaacc atacagatta ccagagaagc gcaaggcaga agtaaataaa      2940
     cagatagcga aaatgctgga cgacgagata atccgtccca gcacgagtca gtggaacgca      3000
     cccttactag tagtaccaaa gaaattagac gcatctggag agcgaaaact acgaatagtt      3060
     gtggattttc agaaattgaa tgacttaaca attggcgatt ctttcccgct cccgaatatc      3120
     actgacatac tagatcaact aggaaacgcg aaatacttta caacattgga tcgggatacc      3180
     atcaaatccc catgcatgag gaacacaaac aaaaaacagc attctccaca ccttacgggc      3240
     actacgaatt taatagaatg ccttttggat taaaaaatgc gcctgcaaca ttccagagac      3300
     ttatgaattc cgtactaacc ggattacaag gcctcaaatg cctagtctat ctagatgaca      3360
     tcgtaatata tggaccaaat ttgaaagagc ataacaaaag actaattgaa gtattcaaaa      3420
     aactaagaga ctacaatctg aaactacaac cgaataaatg tgaattctta agaaaggaag      3480
     tgacatactt aggatacatt atccccgaaa acggtataat accggattct gcgaaaataa      3540
     cggccgtagc aaactttcca ataccaaaac aggtaaaaga tgtgcaatcc ttcataggat      3600
     tagccaggta ttatagaaga ttcatcgaga atttttcgaa gatagcaaaa ccactgacaa      3660
     aactaacaaa aaaggatgag aagttcgctt ggacagcaga acaacagaac gcattcgaaa      3720
     cattaaaaga aaagttaacg atcacactag ttctagctta cccggacttc actaaacaat      3780
     ttatagtaac gacagacgcc ggatacgcca tcggagtagt attgtcgcaa gggccagtag      3840
     gccaagaccg accaattgca tacgcaagca gaattctgaa taaagcggaa caaaactata      3900
     atacaatgga gaaagaattg ctagccatag tatgccgtca cactttcgac cgtacctcta      3960
     tggaacaaaa tttcaaataa ttacagatca caagccattg atctggctat ttagtataac      4020
     agaccctggt tcacgattaa ttagatggag gctcaaatta gaagagtacg actatgaggt      4080
     gatatacaaa gcaggtaaag gcaatacaaa tgctgacgta gcagaaaccc gatcgcgcct      4140
     gacacacaga taaacagcat cgagcgcgac aaggaagaac gcgaatgtaa caaagaagac      4200
     aaggagcaaa taatgtacga atatcataat gccctcctcg gaggacatca aggcgtaaca      4260
     cgtaccgtaa atcgaataca actaatgcac aactggcacg gactaatacg agacgtggaa      4320
     gaatacatcg ccaaatgtga atattgccag aaaaacaaac taagcaagaa aaccaaaatg      4380
     cctctagtac tgaccgacac ggcagaaaga ccgtttcaaa aatgcgccct ggacataata      4440
     ggaccactca cggtcaccat gaaaggaaat aaatacctac taacatttca agacgactta      4500
     acaaaattta gtaaagcaat atcagaccaa gaagcaaaca cgattgccaa agagttcacc      4560
     acaaaaataa tatgcgaatt cggaataccg gagacagtac taacagatta aggaacgaac      4620
     ttcgtcagtg aaatgttcaa ggatgtatgc accctcctaa aaataacgaa aattcaaaca      4680
     accgtgtacc atcctgaaag caacggagcc ctggagagat cgcacagaac tctgatcgaa      4740
     tacttaaggc actatataaa cgaggattaa accaattggg atgaatggat cccatatgcg      4800
     atgttcacgt acaatacgac accgcataca gcaacgggct atacaccgtt cgaattgatg      4860
     tacgggcacc gagcaacatt acctacggcc ctggcagtgc cgccgaaacc atattataca      4920
     tacgataact acgcgcaaaa actaagagaa cgactcagag ccacacagaa agtagcaaaa      4980
     gaacatattc gcgaagcaaa acaaaaagca aaaaactatg cagataaaaa tacgaatact      5040
     aaaaccttca aagtaggaga taaagtcctc ctgcatgacg aagcagtgcg cagaggacga      5100
     tcgaagaaat tggaagcacc atggataggt ccatatcaaa taatcgagaa aacctctgat      5160
     gttaattaca aaattaaaca gaaacgaaaa attacgacgg tgcacgcgaa ccgactcaaa      5220
     ctattcatcg aagagtagca aacaacgcat acgaataatt acccgcaaaa agcaaaaagc      5280
     aaaagcagta aaataaagat taataataat gacaacataa attagagtta gtaaaaagaa      5340
     aaaatacagg actcaccagt cacgcaggac agcgacgaac cgctgcccgg tggcaacgca      5400
     aacttgcacc cgcaacgagt cgcggggata gagctcctcg cagacgggcg gagggggcac      5460
     atgagacctc tcaacgcaga ttgcttgtgg aacacgggga cgatactccc ccgtccagac      5520
     gaccgtggac ggccacctgg acgacatcct caaggatata cgttgggccg ccaggcggta      5580
     tgaccgccgc acgcactcgc cacacataat gggaacatgt tcccgaccac acctagtaca      5640
     ctgcataatg gaaaatctaa gaaataaact aaaaaccgtc cacgacgcgc gacagaccac      5700
     ggtcgacggc agactgaaca aaataattta taatattaaa cgtagcacac aaaaaaatgc      5760
     acgacgagga ttcacggaaa agtaatctga accctaaact tgcaggatgc tccttatgtg      5820
     gagaagagca ggacaagcga cacctgactc tcggcatact cttgactggg aattgttctc      5880
     acactagcca ggaatctact acgaggaaat cggttaaaaa aacatattat cagctgagac      5940
     aggctgaatc ggcatggaga ttagtgataa aactgagcgc aaaagaatta gagatcagac      6000
     accagcaatt gcaagactat atggaggaaa tcgcaataca gtgctgaaaa gtaataggca      6060
     acgctcagtt aggttgccga aacattatga ggataataaa aaaaaatacc aaactgatca      6120
     cgctgttgac acaagtagaa acgctataca aaacgactga caaacgacga ggactgctag      6180
     atgcggtcgg gtcggtcagc aaaatattat tcggaacgat ggacgccgac gatcagaaac      6240
     taatagacga gcaactgcaa acattacgaa caaacggcaa ggtactgcag cacgcggtag      6300
     caaatcaaat aaaagtaatc aacgccacaa tagcgcactt tgacgaatta gaaaatactc      6360
     taaattataa tgaaaatctg ataatgagtg cgacaaaacg actagaacaa cggttgaccg      6420
     agtccacact acaggcagac gtagacgaac acttactaat cctgacaacg ataatgaacg      6480
     atttaatgaa ggacacggaa aatgtaatag actacctgac atacgggaaa aacggaatga      6540
     taccgacacg actactaccc atcaaacata taataacagc tctcaaagaa gcggctacac      6600
     aattaaccat gggattacac tttcctttta aaatccagat tgagcactgg cagaccatac      6660
     acacatacat cagcgtactt ttagcgcata ttcagatggt ccatacatat acacaatctt      6720
     gcgatttccg gtagcatacc ctacatttaa actggttaaa gcaataccgt taccagtaca      6780
     cgatcatgcg aatgtatttg cctacataaa aataaaccat cccttgctag ctatagataa      6840
     agagaatcac cactacaaat tactagagga agtagagtta gaacgctgca tacgagaaac      6900
     aaacacatac acatgcgaac agaacttcgc gacatattat gcggaaacaa cagcaccatg      6960
     cgaggtgtaa atatatacac atacaccggg acagctcaat tactgcgaaa agaaccatat      7020
     gatatctaac ataccgttgt ggatagcatt gacggaggag caagcgtggc tctactccac      7080
     ggcacacaag taagaaatta gcattaagtg cgaaaagcaa atagaagaga aaattatatt      7140
     agaagaaacc ggaaaaataa aactaaaaga taattgcaaa ctaatcacac caaacgtaat      7200
     attaaaagca cgaaaaattg agggaataaa atatatccaa aattacctcc ccgagtacaa      7260
     tataacatta gaaataaaaa taaagacatc gataagaata agctacacga aaccgacacg      7320
     ttacgacaaa taattaagaa cctcgtagat ttaaccaagt taagcataag tctagaagaa      7380
     ataagagaaa ctctagaaga tagcgattat aacttactca aaaataaata cactgtatac      7440
     tctatggaaa caggcacttg cgtagtaata ataactataa tagaattaat aacatggcgc      7500
     acaaacaaaa acaaaaataa aaagcaaaag aaaagcgaga ccgcacagaa gcgccgcgac      7560
     gatgctatgt tatattagtc ataagcacac gattatatta cagttacgcg acaacatatg      7620
     taaactaaca agtaagatca ccttccatcg aagggaggga ggga                       7664
//
ID   Gypsy-2_PBa-LTR repbase;    DNA;    INV; 460 BP.
XX
AC   ADIH01017344;
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   24-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PBa_;
KW   Gypsy-2_PBa-I; Gypsy-2_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-460
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to RU (16-SEP-2011).
XX
DR   Genome; ADIH01017344; Positions    1446     987.
XX
SQ   Sequence 460 BP; 135 A; 128 C; 107 G; 90 T; 0 other;
     tgccgcgagc gccgagaacg caatcacgct caccgctgac aaagcggatt gcggcaagcg        60
     ataccttatc cgacgaatta ttattttacc aagcgatagc gattaccaac gctaccgtgc       120
     taatcgcgca aatattgtgt aatcattcca cgtgaagcaa ctgctaaccg ggttgcgcgg       180
     cccttacgcg gaaaaccgcc gcgcgaccca gaaatatacc gcgaacgctg acgaacatgt       240
     tgatgacacg gcaaggatcg cctggaacag gataaaaacg gaagaccgat actaggagaa       300
     gactcgtcga gatccgccgt gccatcacgt ctgtcgcggt ctgaattaaa aaggacaatc       360
     tgtgtcaagt tttaataaaa tttattgatt atcaaacaaa gtggtgagcg cctccttccc       420
     gccgactcct tgaccgatcc ccgaaacgac ccgcacaaca                             460
//
ID   Gypsy-2_PXu-I repbase;    DNA;    INV; 2788 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio xuthus: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PXu-I.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2788
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2955-2955 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2785
FT                 /product="Gypsy-2_PXu-I_1p"
FT                 /note="retropepsin, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="LAERYKFRQRRQATEENVSEYVAELKKLSRYCAFGSN
FT                 LNENLRDQFVCGLRSDVIRQRLFAEDDSLTFTKAVKIASTLEAAERDAAAV
FT                 EKPLDDGSQATQAVHALSHSGVRSVLPREIRGKGARGGAPGSRGGATSGRS
FT                 GSVGAVSWRGGAAAGERDISRYAACTGCGSSDHRYAVCRFRNYMCSWCRRK
FT                 GHLRRVCPERGSGVSGGRRAADRAELNYAGAEAEDSDEEGLEENFHHLCLN
FT                 DYRPVSLPVVVDAVTINMEVDTGSAVSCISADTYNEYFKHHRIQDSALILN
FT                 FYDGSKIKPLGLIKPMVRYGDHKKRLELFIIRGGNTSLLGRQWLTELNIKV
FT                 PMLSNCHKIDMNDDKVKWSTELNKLCSRYKELFSGGLGRFTGGQATLRVRE
FT                 GATPVFHRARPLPYALRERVDAELDRMLRDGVIEPVDCSDWASPLVPVNKA
FT                 DGSLRVCADYKATLNPVLQIDRYPLPRIEDLMVRLSGACFFSKIDLSQAYN
FT                 QIELDDTKKYTVINTHRGLYRYNRLVYGLASSPGIFQRIMCNLLRGIANVE
FT                 IFLDDVIIGGKTIKEHLEALQEVFSRLHSSGLKLKSSKCVFLVNEIRYLGY
FT                 VISREGIKTDPSKIEAIVKLPRPSNVSELRSFLGILNFYGKFIKNMSGRLV
FT                 PLYELLKKDKEWYWSAECENAFIKIKKILSSVDTLAHYDSRKPLVVTCDAS
FT                 GRGIGGVLTQIDAGSGGERPIAYASRTLTDAEKNYSQIHREALAIIFCVNK
FT                 FHQYLYGRHFTLRTDHKPLVSIFGPNTGIPAMVASRMQRWAIILSAYSFDI
FT                 EYVRTDENSADGLSRLPIDCNKQSEPTPPEQTYLHCIQDSLCLDYNEIKNQ
FT                 TGRDPILARVLLYIRDGWPAHCELANMKPYWNRRXELYEELGCVMWGHRLV
FT                 VPEQCXXKILKIIHEPHMGIVKSK"
XX
SQ   Sequence 2788 BP; 752 A; 579 C; 798 G; 654 T; 5 other;
     gctcgcggaa cggtacaagt tcaggcagcg cagacaagcc acggaggaaa atgtatctga        60
     atacgtggcg gaactcaaga aactgtcacg gtactgtgcg ttcggaagca acctcaacga       120
     aaatctacgc gatcaatttg tgtgtggcct ccgcagtgat gtcatacggc agcgcctatt       180
     cgcggaggac gactcgttga ccttcacgaa ggcagttaaa atagcaagca cgttggaagc       240
     ggcagagcgg gatgcggcgg ctgtggagaa gcctctggac gatggcagtc aagcgacgca       300
     ggcggtgcat gcgttaagtc atagcggggt gcgtagtgtt cttcccaggg aaataagagg       360
     caagggggcg cggggcggcg cgcctggttc gcgtggcgga gcgacgagtg gacgcagcgg       420
     atcagtcggt gcggtgagct ggcgcggcgg agcggccgcc ggagagagag acataagccg       480
     gtatgcagct tgtacaggct gcgggtcgtc ggatcatcgg tatgcagtat gtcggttccg       540
     taattatatg tgcagctggt gcaggcggaa gggacatttg cggcgcgtgt gtcctgagcg       600
     cggcagcggg gtgtccggcg ggcggcgggc cgccgaccgc gccgagctga actacgcggg       660
     agctgaagca gaagactctg acgaggaggg cctggaagag aacttccacc acctctgcct       720
     caacgattac agaccggtga gtctccccgt cgtagttgac gcggttacca ttaatatgga       780
     agttgatact ggctcggccg tatcgtgcat aagcgctgat acatacaacg agtacttcaa       840
     gcatcatcgt atacaagata gtgcattaat tttaaatttt tatgacggct caaaaataaa       900
     gccgctaggt ttaataaaac caatggtccg atatggtgac cacaaaaaaa ggttagaatt       960
     gtttattatc aggggtggca atacatcgtt actggggcga caatggctca ctgagttaaa      1020
     tataaaagtc ccaatgttga gtaattgtca taagatagac atgaacgatg ataaagtaaa      1080
     atggtctacg gagttaaata aattgtgttc taggtataag gaactattca gtggcggact      1140
     cggtcgcttt acgggcggcc aggctacgct gcgtgtgcgg gaaggggcaa cgccggtgtt      1200
     ccaccgcgcg cggccattgc cgtacgcact gcgtgagcgc gtcgacgccg agctggaccg      1260
     catgctgcgc gacggcgtca tcgagcccgt cgactgctcc gactgggcct cgccgctagt      1320
     accggtaaat aaagcggacg gatccttgag ggtttgtgct gactataagg caacgttaaa      1380
     tccggtttta cagatcgatc gctatccctt gccgcggatc gaggatttaa tggttaggtt      1440
     aagcggtgct tgtttctttt caaagattga tttgtcgcag gcctacaatc agattgaact      1500
     agacgacaca aagaaataca ccgttatcaa tacgcacagg gggctatata gatataatag      1560
     gctcgtttac ggtttggcgt caagtccggg tatattccag cgcattatgt gcaatctttt      1620
     acggggaatt gctaatgtgg agatattttt agatgacgtc atcataggcg gtaaaacaat      1680
     taaagagcat ttggaggcat tacaggaagt ctttagtaga ctacatagtt cgggtctcaa      1740
     gttaaaatct agcaagtgtg tgttcctagt taacgaaatt cgatacttag gttacgtaat      1800
     cagtagggag gggatcaaaa cggatccatc gaaaatcgaa gccattgtaa aactgccaag      1860
     gccgagtaat gtttcggaac ttaggtcatt tttaggaatt ttaaattttt acgggaaatt      1920
     cataaagaac atgagtggca ggttggttcc gttatatgag ttgttaaaaa aagataaaga      1980
     gtggtattgg tcggcggaat gtgaaaatgc gtttattaaa attaaaaaaa tactaagtag      2040
     cgtggacacc ctagctcatt atgattctag gaaaccattg gtagtgacgt gcgacgcgag      2100
     tgggcgcggc atcggcggcg tgctaacgca gatcgacgcc ggcagcggtg gtgagcgccc      2160
     gattgcgtat gcgtcgcgca cgttgaccga tgcggaaaaa aactattcac agatacatcg      2220
     cgaggcgttg gctataattt tttgcgtaaa taaatttcac caatatttat atggccgaca      2280
     ttttacgttg cggacagacc acaagcctct tgtatcaatt ttcggaccga acacaggcat      2340
     ccccgcaatg gtagctagtc gtatgcagcg gtgggctatt atcctgtcgg cttactcgtt      2400
     cgacattgaa tatgtgcgaa cagatgagaa tagcgcggac ggtctgtcgc ggttaccaat      2460
     cgactgtaat aaacaaagcg agccgacgcc acccgagcaa acttacttac attgcattca      2520
     ggattcttta tgtttagact acaatgaaat aaaaaaccag acgggacggg atccaatact      2580
     ggctagggta ttgctataca tacgagacgg ttggcctgca cattgcgaat tggcaaatat      2640
     gaaaccgtac tggaataggc gaaakgagtt gtacgaggag ttaggwtgtg ttatgtgggg      2700
     gcaccggttg gtggtgcccg aacaatgtma aaawaaaatt ttaaaaatta ttcacgaacc      2760
     ccacatgggc atagtwaagt caaaggcg                                         2788
//
ID   Gypsy-2_RP-I repbase;    DNA;    INV; 3597 BP.
XX
AC   ACPB02032414;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_RP_;
KW   Gypsy-2_RP-LTR; Gypsy-2_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02032414; Positions    5363    1767.
XX
CC   Positions [2706-3182] - Integrase core
CC   'CTGAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..2535
FT                 /product="Gypsy-2_RP-I_1p"
FT                 /translation="MTPEQKPDSTQTNVLKPERLMVEPSSANASKQWNHWF
FT                 RTFESYVRRSGISDESVKLDYLVTLVSSDIYEYIEECTTYKEAVDILKSLY
FT                 VKRNNEIFARHQLATRCQQSGESLDRFLQELKILSKDCNFSSVTADQHRDE
FT                 SIRDAFITGMLSSNIRQRLLENSTLTLKTAYDQARSLEMAQKQSQSYVNLE
FT                 VPSVNSVLERDSSTSGHSDDSPVAAATSVTCLYCGNRKHSRKVCPARDVVC
FT                 HSCNKKGHFSKVCLANRRQIRKKTSASILAAAPSSLSKAVVKVTINGVCAD
FT                 ALVDTGSSDSFINTEFVVRRQIPMTRAPSNVSLASKAVSSQINGYCVVDLE
FT                 FQRYSYKAKLNVLKDLCADTIIGHDILNQHSSLELSFGGNKAPITICSVHE
FT                 ANVSSVSLFSNLTTDVRPIATKSRRHSLADREFIRDEVTRLLKDGIIEESI
FT                 SPWRAQPLVVSNENNKKRMVIDYSQTINRFTLLDAYPLPRIEEVVNRVAQY
FT                 SVYSSIDLKEAYHQVPIRDDEKAYTAFEANGKLYQFRRIPFGVTNGVACFQ
FT                 RIIDKIINDENLQDTFPYVDDVTVCGVSQEAHDRNLERFLNAAKRYNLSLN
FT                 ENKCVFSATTINLLGYKITQGTIQPDPERLRPLTNLPVPHSTNELKRVLGM
FT                 FSYYSRWIPKFADKIRPLVKTQNFPMDTLAVKAFEQLKTDVASSVVQSIDE
FT                 SSPFTVETDASDFAIGASLSQSDRPVAFFSRTLSKCEQRYSAVEKEAQAII
FT                 EALRKWKHYLIGRHFKLVTDQKSVAFMLDRKHTNKIKNDKIMRWRLEMSCF
FT                 QFDVVYRAGRENQVADTMSRICASIEEPSGKTI"
XX
SQ   Sequence 3597 BP; 1118 A; 800 C; 753 G; 926 T; 0 other;
     atttaatcaa caaaaaacaa aaacacaatt atgactcctg aacagaaacc tgattccaca        60
     caaacgaatg ttctgaagcc agagaggctc atggtggagc ctagctcggc taacgcgtcg       120
     aagcaatgga accactggtt cagaacattc gagtcatatg ttagaagaag tggaataagt       180
     gacgagtcag taaaactcga ttaccttgtt acacttgtct catcggatat ctatgaatat       240
     atcgaggagt gtactactta caaagaagct gtagatattc ttaaatctct ctatgtcaag       300
     agaaataatg aaatatttgc tcgtcatcaa ctggcgacaa gatgtcaaca atcaggtgag       360
     tctttagata ggtttttgca agaattgaaa atactaagta aagactgtaa cttcagctca       420
     gttactgccg accaacatag ggacgaatca atacgggacg cttttattac gggtatgttg       480
     tcaagcaata ttcgtcagag attactcgaa aattcaaccc tcacactcaa aactgcttat       540
     gatcaggcca gatcactcga aatggctcag aagcaatcgc agtcctatgt taatctcgaa       600
     gtccccagtg ttaactctgt gctcgaacgt gacagctcta cctctggcca ctccgatgac       660
     tctccagttg ctgcagctac atcagtcact tgtttatatt gtggcaaccg caagcactcg       720
     cgtaaggttt gtccggctcg tgatgtcgtt tgccattctt gcaataaaaa ggggcatttt       780
     tccaaagtat gtctagcgaa taggagacaa attagaaaga aaacctcagc atctatacta       840
     gcagctgccc catcttcctt atcgaaagcc gtggtaaagg ttacaataaa cggggtatgt       900
     gccgacgcgc tagtggatac aggtagctct gacagcttca tcaacacaga gtttgtagtt       960
     aggcgtcaga tacctatgac aagagcccct agtaatgtca gcctcgcctc taaagctgtt      1020
     agttcgcaga ttaatggata ttgcgttgta gatctcgagt ttcagagata ttcttacaag      1080
     gccaaactaa atgtcctaaa ggacttatgc gccgacacca tcataggtca cgatatactg      1140
     aatcaacaca gtagtctaga gctctcattt ggtggtaata aagcacctat cacaatttgt      1200
     agtgttcatg aagctaatgt aagttcagtt tcactctttt cgaacctgac cactgacgtc      1260
     aggcctattg ctactaaatc caggcgacat tctctagccg atagggagtt cattagagat      1320
     gaagtaactc gactcttgaa ggacgggatt attgaagaga gtatcagccc atggcgtgct      1380
     caacctttag tcgtcagcaa tgaaaataac aagaagagaa tggtcatcga ttactcgcag      1440
     acaatcaata gatttacgct actggatgcc tatccactgc ctagaattga agaggtagtg      1500
     aaccgcgtag cccaatacag tgtgtacagt agcatcgatc taaaagaagc ttaccatcaa      1560
     gttcctatca gagacgatga gaaagcttat acagcattcg aagctaacgg aaagctctat      1620
     cagttccgcc gaatcccctt cggcgtgact aatggtgtag cttgttttca aagaattatt      1680
     gacaaaatta ttaatgacga gaacttgcaa gacacctttc cttacgttga tgatgtcact      1740
     gtttgtggag tgtctcaaga agctcatgac agaaacttgg aacgtttcct caatgctgcc      1800
     aaaaggtaca acctatcgtt gaatgaaaat aagtgtgtgt tttcggcaac aaccatcaac      1860
     cttttgggat acaagataac ccaaggtacg atacaacctg atcccgagcg gcttcgtcct      1920
     ttgactaacc tgccagttcc gcattctacc aacgaactaa aaagagtttt aggaatgttc      1980
     tcgtactatt cgcggtggat acctaagttc gcagataaaa ttcgaccact tgtcaaaact      2040
     caaaatttcc caatggatac attagcggta aaagcatttg agcaactcaa gacagatgtc      2100
     gcctcttcag tcgtacagag catagatgag agttctccat tcactgtaga aactgacgct      2160
     tcggattttg caattggagc atcgttgtcg caatccgacc gtccagttgc atttttttct      2220
     agaacattat cgaaatgcga gcagcgttat tcggcagttg agaaggaagc acaggccatt      2280
     attgaagcgc ttaggaaatg gaagcactat ttaataggcc gacattttaa gctagtcacg      2340
     gaccaaaaaa gtgtcgcttt tatgttggac aggaagcaca ccaacaagat caaaaatgat      2400
     aaaataatgc gctggcggtt ggaaatgtcc tgtttccagt ttgatgtggt ttatcgcgct      2460
     gggagagaaa accaggtggc agacacgatg tctagaatat gcgcttccat tgaggaaccg      2520
     tcaggaaaaa caatttagta gaattacaca catccctatg ccatccaggg gtgacaagaa      2580
     tgtaccatta cgttcgtatt aagaacttac ccttttcgct agatgatatt cgaaaaatta      2640
     cgaacgcctg tagcatttgt gctcaactca aaccacggtt ttacaagcag aagggtactc      2700
     taataaaagc tacgagcccc tttgaaagac taaacataga tttcaagggc cctcttccaa      2760
     gtttaaccaa gaaccgatat ctcctgacaa ttgtggacga gttttcaagg ttcccctttg      2820
     cctttccctg caaagacgtt acttcatcca cagtaataga atgtcttcgt cagttattct      2880
     acttgtttgg gattccttgt tacatacatt cggatagggg ctcatcatca atatctaagg      2940
     aactaaaatc atttcttact tctttaggca tagcaactag ccgcacaacc ccatataacc      3000
     cacaaggtaa tgggcaagta gagcgctaca acggtatcat atggaaaaca gtatctcttg      3060
     cactcaaatc aaaaaacatg gaacagggag aatgggaggc cgtgttggcg gattcactac      3120
     atgcgattag aactcttcta tgtacagcca ccaatgaaac gccccatgaa caacaactgg      3180
     actagctaca cccacttggc taattacacc gagaccgatc ctcctaagga aacatgttag      3240
     acaaagcaaa tttgaccctt tagtagaaga agtggagcta ctggaggcta atccatccta      3300
     tgctcacgtc agattcccgg atgggaggga atcaacagta tcacttaggc atttagctcc      3360
     cagtggcgat cccgattgtt ctctcgaaac cttgcaggct ccccaaggga acgaggagct      3420
     agagaaaaca atgggtgtta acgaaacgga gcatcaaggt actgaattcg caaccgctac      3480
     tccaccacta gcagaaccga catctactaa agaaggaact gggagacctg ttagaatccg      3540
     gcggatccct tcttatttac aagaatatca cctgaacacc ctctcaggag ggaagaa         3597
//
ID   Gypsy-2_RP-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   ACPB02032414;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_RP_;
KW   Gypsy-2_RP-I; Gypsy-2_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02032414; Positions    1766    1564.
XX
SQ   Sequence 203 BP; 57 A; 22 C; 45 G; 79 T; 0 other;
     tgagatgaaa taagagtgaa tttggcgggc atcttggaaa tagggagggt aaccagaagt        60
     aaacctcctt gtgtggacta tatatattgt ttataatgta gtgtactatg tattgttcta       120
     atgtagtgtt tctatgtatt tctatgtact atgtattgtt ctttgttgat taaagcctac       180
     atttaaggtc tagtgtcatt aca                                               203
//
ID   Gypsy-2_SI-I repbase;    DNA;    INV; 4390 BP.
XX
AC   AEAQ01005246;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SI_;
KW   Gypsy-2_SI-LTR; Gypsy-2_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01005246; Positions    4623     234.
XX
CC   Positions [3237-3722] - Integrase core
CC   'GGTGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1046..2839
FT                 /product="Gypsy-2_SI-I_1p"
FT                 /translation="MEVDSGASRSVIHVNDYKELFRDLELEPVSFKLKVVT
FT                 GENVTIVGQITVSVSYHKKQFMLPLVILYSKSRFMPLLGRNWLNIFNPEWR
FT                 NVIDTKLVIKTQDINSLTNSKSIKHNVSQVKENNKVKNMVTQIKKEYAEVF
FT                 KDEPNAHIKKFKAEITLKEGVSPIFHRAYEMPYALKPKVEEEISKMVKSGI
FT                 LTKVTHSDWASPVVIVPKKNSSDIRICVDFKKTLNRVIDRDHCVLPLPEDI
FT                 FACLSGSVVLCVLDLKRAYQQLVIGENSKKLFTINTHLGLFKFNRLTYGVS
FT                 AAPGIFQSCMETILAGISNAKCYLDDILIYGSSLTECYDYVRQVLERLREY
FT                 NVKVNESKCKFFRESVEFLGHRIDAQRVHPLDDKVECIKKAPSPQNRTQLK
FT                 SFLGMLNYYGKFIPMLSSILKPLYDLCGNSNGKFQWSEECERVFQESKKLL
FT                 TESNVLIHFNPKLPIIVTYDASGYGVGAVLSHKIDGDLRPVLFASSTLSKA
FT                 EQRYSNIERESLALIFALKKLHKYLYGRKFTLITDHQPLQFIFGKNKSIPV
FT                 TAAARITRWALSLSAYDYELEYKPGKLIANADSLSRLPVEGRTDFRIFEFI
FT                 "
FT   CDS           3351..4286
FT                 /product="Gypsy-2_SI-I_2p"
FT                 /translation="MEEGTNAKETIMRLKEIFAVFGLPVELVSDNGPPFGS
FT                 IEFVNFCQTNGITIIKAPPYHPQSNGIAERGVQTVKKSLSRALFHESGKSV
FT                 SKNIIVSCLLNFLFTYRATPSSVTGISPAQDLFKVRPRTRFDLIKPSCCKS
FT                 KLREGTLLSKKIHSFAVNQNVYVKNNQTKLWQIGKIVKIVSHSTYLVQVGN
FT                 SIRFIHANDIRPNISNNIENQQGTNQKEGVPSSRPISSSKILNNNNDIIAL
FT                 DTPLFNAVSPQQQDREIERKEESAEVVPIKVEENKKTVNSPTVKDVTVNTP
FT                 KVFKTTRSGRIIRSPVKLNL"
XX
SQ   Sequence 4390 BP; 1630 A; 637 C; 882 G; 1241 T; 0 other;
     taatattggc gacgagtaag aaaagaatcc acataatagt taaccaaaac aatttaagca        60
     agaaacacaa ctcaagttgt aagtagaggt tagaatgtcg ctaatcggga atatagattc       120
     aatcctaaag aggcggaaat aacagcgtat ctagaacggc tggagatgtt atttcaatgc       180
     aatgatgtgg aggatacaaa aaaagtatca ttgctattga ctctaatagg aggagaagtt       240
     tatgggacgc tcaaacatct tttagcgccg gcacttccaa gcagtaaatc attcggtgaa       300
     ttgaaaactg tgttaatgaa tcattatagt cccaagaggc tagtgatagc agaaagattc       360
     aaattctatt cggcaagcca agaagagaac gaagatataa aatcgttctt agccagactg       420
     aagagtttga cacaatactg tgagttcgga ggattcttag aagaaacgct acgagatcgt       480
     ctagtgtgtg gagttcgttc agaagggatt aaacgcaagt tattaacgga agaaaatctg       540
     tcattcgaac gagcaatcca aattgctgta ggtttggaaa tagccgaggg tcaaatcaaa       600
     ataatgggat cggagtctgg aacaatacac aaggtcaatt ttcaaaaaga caacaaaaat       660
     aaaaagtcaa gtagaggtac tctacagttt aaatcgtcac ctaaccaatt caatagcggc       720
     tataaggcta atcgccctgc atttgtccga aacaaaagtt gtaaaagatg tactagatat       780
     catccggaaa atgttagctg tccggctatt aattgacagt gctactcgtg tcatcagaaa       840
     ggtcatacag cgaagtcagt tctatgcaag aatagggtcc atgaattatc tacaaaagaa       900
     gatgaagatg agtcagaggt cgttgaagaa gatacgttgg aattagggtg gatacaggaa       960
     gaggacagaa aatattatat aaaccaaatg tagggacact gaaagtttaa agattaagct      1020
     tccgatagaa ggtaaatatt tgttaatgga agtagattca ggagctagta gatcggtaat      1080
     acatgtcaac gattataaag aattatttag agatttagaa ttagagccag tcagttttaa      1140
     attaaaagta gttacaggag aaaatgtgac gatcgtaggg caaattactg taagtgtatc      1200
     atatcataag aaacaattta tgttgccttt ggtaatttta tatagcaaaa gtagatttat      1260
     gcctttacta ggtagaaatt ggttgaatat ttttaatcct gagtggagaa atgtcataga      1320
     tacaaagctt gttattaaga ctcaagatat taattcgtta accaatagta aatctataaa      1380
     acataacgtg tcacaggtaa aagaaaataa taaagttaag aatatggtaa cacaaattaa      1440
     aaaagagtat gcagaagtat ttaaggatga accaaacgca catataaaaa agtttaaagc      1500
     agagattaca ttaaaagaag gtgtcagtcc gatatttcat agagcatatg aaatgcccta      1560
     cgccttaaaa ccaaaagtcg aagaggaaat atcaaaaatg gtcaaatctg gtattttaac      1620
     aaaagtaaca catagcgatt gggcaagtcc ggtagtaata gtaccgaaga aaaatagttc      1680
     agatattcga atttgtgtag actttaaaaa aactctaaat agagtaatag atagagatca      1740
     ctgtgtgttg cctttgcccg aggatatatt tgcatgtttg agtggtagtg tggttttatg      1800
     tgtgctggat ctaaaaagag cgtatcaaca gttagtaata ggagaaaatt caaaaaaatt      1860
     gtttacaata aatacgcact tagggttatt caagtttaat cgtctgacat atggagttag      1920
     cgcagctcct ggaatttttc agtcgtgcat ggaaacgata ctagcgggta tttcaaatgc      1980
     taaatgctac ttagacgata ttttaattta tggttcctct ttaaccgaat gttatgatta      2040
     tgtacgacaa gtgctggaac gtttgagaga gtacaatgta aaggtgaacg aatcaaaatg      2100
     taagttcttt agagaaagtg tagaattttt aggtcacaga attgatgcac agcgagttca      2160
     ccctttggat gataaagtcg aatgcataaa aaaagcacct tcacctcaaa atcgtactca      2220
     actaaagtca tttctgggta tgttaaatta ctatgggaag tttataccta tgctttcgtc      2280
     aatacttaaa ccactctatg acttgtgtgg aaattcaaat gggaagtttc agtggtccga      2340
     ggaatgcgag cgagtatttc aagaaagtaa gaaattactt acagagagta acgtactcat      2400
     acactttaac ccaaaattac caattattgt aacttatgat gcgagtggat acggagtagg      2460
     agccgtgtta agtcataaga tagatggaga tttgagacct gttttgtttg cgtccagtac      2520
     attatcaaaa gccgagcaac gttattctaa cattgagaga gaaagtttag cacttatatt      2580
     tgcgttaaaa aaattacata aatatttgta tggaaggaaa tttacgttaa taactgacca      2640
     ccaaccgcta cagtttattt tcgggaaaaa taaaagcata ccagttactg ctgcagcacg      2700
     aattacacgt tgggcattat cgttatctgc ttatgattac gaattagagt acaaaccagg      2760
     aaagttaata gcaaatgcgg atagtttgtc tagattacca gtggaaggga ggacagattt      2820
     cagaatcttt gaattcattt agtttagtta atgaactccc ttttgatgca aatgatattg      2880
     ctgacatcac aaaaaaagac ataattttag ctaaagtatt agaactaaca ctttcgggat      2940
     ggccaaacac tattaagaat aaaattgaac tgggaccata ttttaagagg agacatgaat      3000
     tattggtaga gaacaattgt cttttagtag gtaataaagt cattattcca aagatattac      3060
     aaaaggaaat attacaacta ttccatgagc aacatttagg tatagtccga acaaaaatgt      3120
     taatgagagc ttactgttgg tggccaggta ttaacgaaga tatcgagtga tttataaata      3180
     attgtaaggt ttgtcaacaa acacaaaact ttacgagtaa gggtgcactt ctaccttggc      3240
     cgagcgcacc tcataacttt tatagagtgc acatagattt cttccataaa tatgggtata      3300
     catttcttat attgatagat tgtaagtcaa aatggctaga agtaaaatta atggaagaag      3360
     gcaccaatgc gaaagagact attatgcggc taaaagaaat atttgcagtt tttggtttgc      3420
     ctgttgagtt ggtatcagat aatggaccac ctttcggttc tatagaattt gttaattttt      3480
     gccaaaccaa tggaataaca ataataaaag caccgcctta tcacccacaa agtaatggaa      3540
     tcgcggaacg gggagtacaa acggtaaaaa aaagtctgtc aagagctctt ttccatgagt      3600
     caggaaagag cgtcagcaaa aacataatag tctcttgttt actaaatttt ttgtttactt      3660
     atagagcgac tccgtcaagc gttacgggta tatccccggc acaggatctt tttaaagttc      3720
     gtccgagaac tagatttgat cttattaaac cttcatgttg taaaagcaaa ttgagggaag      3780
     ggactctttt atcaaagaaa atacattcat ttgctgtaaa tcaaaatgtt tacgttaaga      3840
     ataatcaaac taaattgtgg cagataggaa aaatagtaaa aattgtaagt catagtacat      3900
     atctagtgca agtaggaaat agtataagat ttatacatgc gaacgatata agaccgaaca      3960
     taagtaataa catagagaac caacaaggaa caaatcaaaa agaaggtgta ccttctagtc      4020
     gtccaatatc tagcagtaag atattgaata ataacaatga tattatagcg ttagacacgc      4080
     ctttatttaa tgcggtatca cctcaacaac aagaccgaga aatcgaacga aaggaggaat      4140
     cagcagaggt ggtcccaatt aaggtagagg aaaataagaa gactgtaaac tcacccacag      4200
     ttaaggatgt aacagtaaac acccctaaag tttttaaaac tactcgttcg ggaagaataa      4260
     taagatcacc agtaaaatta aatttataag cgtcatactt tgttaataat aatactatat      4320
     tttatatgta agttgtgtgt atatgcattc tatataatta ttatagtttt tatttaatca      4380
     agggaggaaa                                                             4390
//
ID   Gypsy-2_SI-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   AEAQ01005246;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SI_;
KW   Gypsy-2_SI-I; Gypsy-2_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-181
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01005246; Positions     233      53.
XX
SQ   Sequence 181 BP; 56 A; 26 C; 38 G; 61 T; 0 other;
     tgatgcatat ggcactacgt tagaaatcag ccttaatggc tcattcgttt gtaagtcaag        60
     gttggcggcc ttgcgaggtc tttagagatt tggacggttg taatataata gctattaaaa       120
     tattataata aaggctacgt taatcagagt ctataactgt gtgttatttc aatacataac       180
     a                                                                       181
//
ID   Gypsy-2_SiCu-I repbase;    DNA;    INV; 4490 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4490
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5031-5031 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..4335
FT                 /product="Gypsy-2_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPAKTEPKAKVKQEDTSSSSTSASSTTSPPPTTTITV
FT                 MSTIGILKPYETSEDFSVWVETFQAFLSANGLSKPTSDDEKAKVRGIFISS
FT                 LGIPTYTLLKSLLSPTDPTAKSLDELIKELKDHLQPAPKAIAERFRFMRRM
FT                 QQPGESVSKFLAELRQLATHCQFKTDLEFRLRDQFILGLRSEQAQKSLFTK
FT                 KDDIALKDVVGVAIAQESADSNTALVRGQQQQSTEASDVHKATKAQSRKGG
FT                 KNNNTQQQQQGNEKQRGGKQFQKSNQQQKHCPNCGSTQHLTARDCPHKNIE
FT                 CHKCHKSGHFAKMCRSSRTRSSHHVQLDSVSDNRHVRSNIFKVNHDAPIMF
FT                 KVKIGDHDHQMEADSGAQTAVLSKEFWKTTLKSPPLLPSSYRFRTYTNEIF
FT                 HAIGEYKTQIQYNNQVKWHSFPVCDGPSLFGRDLLRLFKIDWDDFERQCHV
FT                 VSASKPSQPTLNSLLNEFGDVFQSPSASDRIHQFKARIHLQEGATPKFLKA
FT                 RPLPYAVREKVDQELELMEKQGVIERIETSDWASPLVVVPKDNGRVRITGD
FT                 FKATVNSQLCVTQYPIALPEDIFACVSGGQKFSKLDGSNAYHQIEVEETCK
FT                 QFLVINTHRGLYRYNVLPQGIASSPAIFQEFMDRMLAGIPRTGSYIDDGLT
FT                 TGATDEEHLHNLRRIFEQFRKYNYKLSKEKCQFMKSSVEFLGHVISQHGIE
FT                 TSNRKVEDIVKIPAPKTVSELRSFLGFINFYGKFIPKLSDLCAPLYKLTEE
FT                 KEDWKWTNQHKEAFAEAKKRLSSSPVLAHFDPNLPIGLSCDASSRAIGIVL
FT                 FHKFQDGSERPIAYASKLLSPTEQRYSQIEKEAYSIIIGIRKFYKYLCCRK
FT                 FTLITDHQPLLKIFGPKTQLPSFAASRLHHWSVYLSQFQYDVQYRRTDQHG
FT                 NADALSRLPCKDSIPADSTTESLVRQVVSEQLTVMPVTAAAIRKATARDPV
FT                 LSKVVQFVVSGWPAQLKPEEKNLQNFFSRRDEFSIVQDVLLWGVRVVIPES
FT                 LRDRILQQLHDSHLGIVKMKSLARQYVWWPRVDDDIEATAKSCVQCQQQHP
FT                 DPASAPLHPWQFPQRPWQRLHMDLAGPLHNKMWLIIVDAHSKWPEVYAMGT
FT                 DTTSAAVLTKLTDVISRFGIPEQIVTDNGRQFASSEFATYCKQNGIKHIPV
FT                 SAYHPRSNGEAERFVQTFKKAIKKKATMSVDLQLSRFLFTYRVTPHSTTAS
FT                 SPAELLQGRKLRTALDLVRPSVQTSVDQAQARQEAAYNSGTKFRELSPGQD
FT                 VWVKTHSKNEEKWSFGVVVKPLGPVTYLVKVGGKEMRRHVDQIRAAASRQQ
FT                 QPQDEEVSSCPIPSNPPSRNATPASTPQSSPVRPPPTPRSDQSQQHNEPES
FT                 APPPRSPVAEQQAESSSSTRYPRRQTKPVQRYGH"
XX
SQ   Sequence 4490 BP; 1236 A; 1233 C; 1012 G; 1008 T; 1 other;
     ttctggcgac gagtacaagt ccagaatagt ttttttcgag tgttttttcc cgtctcaagt        60
     caagttttac acacactacg tttacagtgt gtagtctcac gttaccccga ctagtacagc       120
     ggcatagtag aagcgtcttc tcacatgcca gcaaaaacag agcccaaagc gaaagtaaag       180
     caagaagaca ccagttcatc cagcacgagt gcaagttcta caacttcacc tccacctact       240
     acaacaatta cagttatgtc tacgataggc attttaaagc cctacgagac aagtgaggat       300
     ttttctgtgt gggtggagac tttccaagcg ttcctgtcag ccaacggatt gtccaagccg       360
     acgagtgacg atgaaaaggc caaagttcga gggattttca tctcctcsct gggcattccc       420
     acctacacgc tgttgaagag cctcctctct ccaacagacc caacagccaa atccctggat       480
     gaactcatca aagagttaaa ggatcacctg cagcctgccc ccaaggccat agcggagcgt       540
     ttccgtttta tgaggaggat gcagcagccg ggcgagtccg tgtccaagtt cctggccgag       600
     ttacgtcagc tcgccaccca ctgccagttc aaaacggatc tggagtttcg ccttagggat       660
     cagtttattt tggggctccg cagtgaacaa gcccagaaat ccctgttcac taagaaggac       720
     gacatcgctc tgaaggatgt cgtaggcgtt gccatcgctc aagagtcagc cgacagcaac       780
     acagcgttag tccggggtca acagcagcag tctacagaag cgtcagatgt ccacaaggcc       840
     accaaggccc agtctaggaa aggagggaaa aacaacaaca ctcaacagca gcagcaagga       900
     aacgagaagc agcgcggtgg aaaacagttc cagaaaagca atcaacaaca gaagcattgt       960
     ccgaattgcg gctctactca gcacctgaca gcccgagatt gcccgcataa aaatatcgag      1020
     tgccacaagt gtcacaaaag tggtcacttt gcaaaaatgt gtcgctcttc cagaacacgc      1080
     agctctcatc atgtccaact ggactcagtc agtgacaacc gtcacgtccg ttccaacata      1140
     tttaaggtga atcatgatgc cccaataatg ttcaaagtga aaattggaga tcatgatcac      1200
     cagatggaag ctgatagcgg tgctcagaca gcagtactgt ctaaggagtt ctggaagacc      1260
     accctcaagt cgccgccgct gctcccctca tcataccgtt ttcgtaccta cacgaacgaa      1320
     atcttccacg ccattggtga gtacaagacg cagattcagt acaacaacca agtcaaatgg      1380
     cactcgtttc cagtttgtga tggcccatca ttgtttggcc gcgacctgct ccggcttttt      1440
     aaaattgact gggacgattt cgagcgacag tgccatgtcg tttcagccag caagccatca      1500
     caaccaacgt taaattcact gttaaatgaa tttggtgacg tgttccagtc cccatcagca      1560
     tcagacagaa tccaccagtt caaggcaagg attcacctcc aggaaggagc aacgcccaag      1620
     ttcctgaagg ctcgtcctct tccctatgca gttcgtgaga aggtcgacca ggaactggag      1680
     ctgatggaga agcaaggagt catcgagcgg atcgagacct ccgactgggc gtcaccattg      1740
     gtcgtcgtac caaaagacaa cggacgagtg cgcataactg gcgattttaa agcaacagtc      1800
     aacagccagt tatgtgtcac acaatacccc atcgctctcc cagaagacat ctttgcctgt      1860
     gtgagtggtg gacagaagtt ttcgaagctc gatgggtcca acgcttatca ccaaatcgaa      1920
     gtggaggaga cctgcaagca gtttctggtg ataaacaccc accgagggct ttatcgttat      1980
     aatgtgcttc cccagggcat cgcatcatcc cctgccatat tccaggaatt tatggacagg      2040
     atgttagccg ggataccacg taccgggtcg tacatagatg acgggctgac cactggagct      2100
     acagatgagg agcacctcca caacttacgt aggatcttcg agcagttccg taagtataat      2160
     tataaattga gcaaggaaaa atgccaattt atgaagtcat ctgtcgagtt cctgggtcac      2220
     gtcatctctc agcacggtat tgagacgtca aaccgaaaag tggaagacat cgtcaagatt      2280
     ccagcgccca aaacagtttc cgagctacgc tcattcctgg gattcataaa cttttatggc      2340
     aagtttatcc cgaagttgtc cgacctgtgt gcaccgctgt acaaactaac cgaagaaaaa      2400
     gaagattgga agtggacaaa tcagcataag gaagcatttg ctgaagcaaa gaaacgtctt      2460
     tcttcatctc ctgtgctcgc ccactttgac cccaatctac ccattggctt gtcgtgtgat      2520
     gcaagttctc gagcaattgg aattgtcctt tttcacaagt tccaggatgg ttcagaacgt      2580
     ccaattgcgt acgcctccaa actcctctct ccaactgagc agcgctacag ccagattgag      2640
     aaggaagcct actccatcat catcgggata cgcaaattct acaaatacct ctgttgtaga      2700
     aagtttactc tcatcaccga ccatcagccg cttttgaaga tttttggtcc aaaaacccag      2760
     ttaccgtcgt ttgcagcgtc ccgcctccac cactggagcg tgtacctcag tcagttccag      2820
     tatgatgtcc aataccgccg aactgaccag cacggcaacg cagatgcttt gagtcgcctt      2880
     ccctgcaagg actcaatacc agctgactcc accacagagt cactcgtacg tcaagttgtt      2940
     tctgaacaac tcaccgtcat gcccgtcact gcagctgcaa tccgcaaagc gaccgctcga      3000
     gatccagtcc tctccaaagt ggtccagttt gtcgtttctg gttggccagc ccagctgaaa      3060
     cctgaagaaa agaacctgca aaattttttc tccagacgag acgagttttc cattgtccag      3120
     gatgtgctat tgtggggagt tcgtgtggtg attccagagt ccctccgtga ccggattctc      3180
     cagcagctcc atgactctca tctaggcatc gttaagatga agtcacttgc ccgtcaatac      3240
     gtctggtggc ccagagttga cgacgacatt gaggcgacag cgaaatcctg tgtccagtgt      3300
     cagcagcagc atcctgatcc agccagcgca ccgcttcacc cgtggcagtt tccacaacgc      3360
     ccctggcaga gactccacat ggacctggct ggtcctctcc acaacaaaat gtggctcatc      3420
     atcgtcgacg cccactcaaa atggccagaa gtttacgcca tgggcaccga caccacctcc      3480
     gctgcagtcc tcaccaagtt gacggatgtc atctctcgtt ttggcatccc tgagcaaatt      3540
     gtcacagaca atggacgaca atttgcctcc tccgagttcg ccacctactg caagcaaaat      3600
     ggcatcaagc acatccccgt ctccgcctac catccacggt ccaacggcga ggcagagcga      3660
     ttcgtgcaaa ccttcaagaa agccataaag aagaaagcaa caatgagcgt tgacctccag      3720
     ttatccagat tcctcttcac ctaccgtgtc acgcctcatt ccaccacagc aagttcccca      3780
     gcggaattgc tacaagggag gaagctccgc acagcattgg atttggttcg tcccagcgtc      3840
     cagacgtcag tcgaccaagc tcaagcacgt caagaagcag cgtacaacag cggtaccaag      3900
     tttcgtgagc tttccccggg acaagatgtt tgggtgaaaa cccactccaa aaacgaagaa      3960
     aaatggtcct ttggtgtcgt cgtcaagccg ttaggtcctg tcacctattt ggtcaaagtt      4020
     ggaggaaagg aaatgcgccg ccacgtcgac caaatccgtg cagcagcatc acgacaacag      4080
     cagcctcaag atgaagaagt ctcaagctgc cccattccaa gcaatcctcc aagtcggaat      4140
     gctactccag catccacgcc tcagtccagt ccagttcgcc cgcctccgac accaaggtca      4200
     gaccaaagtc agcagcacaa cgagcccgag tcggctccgc cgccacgttc tccagtagcc      4260
     gaacagcaag cagaaagttc cagctccaca cgttatccgc gccgccagac caagccggtt      4320
     caacgatatg gacattaaaa atattatatt attcatgcta attatctaat gatgaatgat      4380
     gtatgtatgt tagatgccga aaaattgttt gttaagattg aaatgaaatt atgtgtctgt      4440
     ttgctgactt aaagattttg ttagttagtt aaaaactaga aaggaggaaa                 4490
//
ID   Gypsy-2_SiCu-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-306
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5080-5080 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 306 BP; 92 A; 76 C; 51 G; 86 T; 1 other;
     tgtggtgtat tagaataaga tgctaatatt aaggttaatt atactacacg tgtctaatga        60
     gcmttgatca ctcatgtaga cactaattac ttgtatgtcg cctgtgccgg ccaactcccc       120
     aataaagatt agttaggagt accgacacag cccaagatca cttcacttga gtcctagact       180
     tgtctgtagc acaccgttct ctccagtaaa taaataccta cagactattg gcaaagaacc       240
     catgctacct tgtagtaaag cgtgcaccta atttacccac tcgctcacct agcttcatat       300
     accaca                                                                  306
//
ID   Gypsy-2_SiOr-I repbase;    DNA;    INV; 5093 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5093
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 339-339 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           604..1482
FT                 /product="Gypsy-2_SiOr-I_1p"
FT                 /translation="MKKQENHFQEAVEDLEERLQQKMEKLEMDLQKTKAQV
FT                 RTPGVHGTANLKAPTYDGQTTWTMYHRQFEAAAAANGWTDQEKAAALVIAL
FT                 RGPALELLQTIPAAQQQEYQTLVAALDRRYGDQHRRQLYQAQIKTRLQRSG
FT                 ESLQEFEADLRRLVHLAYPEAPEGFREELAAQCFISGLRDNELQRALQISR
FT                 FSTSSEALVRALEIEAAFSAIPRPKIRSVTVEEQPESTHRGLEEMCKKVDK
FT                 LCELLINKGINNTQTENQRRSQDIRCFRCGRNGHIQTGLPRSNAIPFTIQR
FT                 T"
FT   CDS           1486..5079
FT                 /product="Gypsy-2_SiOr-I_2p"
FT                 /translation="APGKLKSVNTKGRVLTGENRAPRIFSIRSLGRTADSL
FT                 VIDGKVNGKGIRMTVDTGAMVSLVRANSVQGLKLMPLRRRVCLRTVTGEMA
FT                 VVRGEAIVELKLGNLKFQHSVLVADIEDDFILGMDVIRQHGFSFDHQRNIL
FT                 NIGNEEFMLSPDEGPGRMDVRSAETVVIPGNTEKIVFGKVEKIAGCCVGLV
FT                 QSSDKKQDRYLVGKSLVNTDKNIPIRIANVFPNCVKIQKGDKIAICEPVRS
FT                 VTRCDEVSSAVTQKASQETLKHLEQPWDHLTSEEKQKAKQFLLKHGSILRK
FT                 NNSGRTDFVKHRINTGHAQPIRQRPRRVPLSKQQEMETMVDKMLEDGVIEE
FT                 SSSPWSSPVVLVTKKDGSTRFCVDYRKLNDVTKKDSYPLPRIDDTLTTLAG
FT                 SCWFSTLDLKSGYWQVGLDEEDKEKTAFSTGNGLYQFKVMPFGLCNAPATF
FT                 ERLMEVVLRGLTWKTCLVYLDDVLVMGRTFEEHLRNLEEVFGRIRNAHLYL
FT                 NPKKCSLFQRQVEFLGHVVSADGIYTDQKKIAAIKDWPKPRDKHELRSFLG
FT                 LCTYYRRFVKGFANIAAPLHRLTGDEVGYEWNTDCDVAFGRLKAALCSSPI
FT                 LAYPQQQGRYILDTDASNIGIGAVLSQVQDGEERVIEYYSRVLSKPERNYC
FT                 VTRKELLAIVKAVDHFHKYLYGQEFLIRTDHAALKWLMEMKQPEGQIARWL
FT                 EKLQQYHFTIQHRAGKMHGNADGLSRRPCQTDCKHCCKTEQREGTVMIRSF
FT                 KLGTDEQWTTTQLRKDQMEDPDIGAILRLKEGNGERPPWQDIADRGLVFKA
FT                 LWAQWNSLVIENGLLKRTWESADGSTVTTQLLVPRKKVTQVLEEIHGGKTG
FT                 AHLGVNKTLSKLRDRFYWVDYCEDVKKWCRQCKICAASQGPSTRSRGKMKQ
FT                 YNVGLPFERIAVDIAGPFPETHKGNKYVLVAMDYFSKWPEVFAIPNQEAST
FT                 VAEVLVNNVFSRFGIPLELHTDQGRNFESRLFQKMCDLLGIHKTRTTALHP
FT                 QSDGMVERFNKTIEEHLSKMVDEHQRDWDQHIPLFLMAYRSAVHNTTGLSP
FT                 SKILFGRELRLPCDLVFGSPDDSTTNVEDYADELKERLLGIHKAVRSKITL
FT                 ASDRMKARYDLRANSTGFQQDDMVWLYNPQRKKGRSPKLTPAWEGPYTVIK
FT                 RINDVVYRIQRSPRSKMKVVHLDRLKRYQTGNLDRDDQI"
XX
SQ   Sequence 5093 BP; 1680 A; 985 C; 1319 G; 1109 T; 0 other;
     attggtgtcg gaagtgcgat tcaagaggat tttaagaaga aattaagtgg attggaagat        60
     ttttagaccg aattagagta tttttatggt tggtacaagg gaacaagcga agaaaatgga       120
     ggaagtaagc aaactattag gcgattttat ggagaatatg agaagagaga aggcagaaga       180
     acaagagagg ctgcgaaaga acgagaagaa gagcgagccc gattagaaag agagaaagaa       240
     gaggaacaag accgcctacg aaaatactta tggaaaatca agaaaaaaat attagaaggt       300
     ttagaagcgc gtcaaaagaa agaaaaacaa gaagaacagg accggcttga gaaaatgttg       360
     ggaaatttgg aaattcgaac agcgacatcg tagagaaaaa caagaagaac aggaccggct       420
     tgagaaaatt ttcgaagatt tgaaaattca acgacaacaa gacaaacaag aagaacagga       480
     ccggcttgag aaaattttag aagatttaga aattcattta gagagcgcca gaaagacaaa       540
     caagaagagc aggaccgtat tcagaaaagt ttcgaaaatt cggaattcga ctcaaattcg       600
     aagatgaaaa agcaagagaa ccacttccaa gaagccgtag aagatctgga ggagcgcctt       660
     cagcagaaaa tggaaaaatt agagatggac ctacagaaga ccaaggcaca agtaaggaca       720
     cctggcgttc atggaactgc gaacctcaag gccccgacct acgatggaca aaccacctgg       780
     acgatgtacc accgccagtt tgaagcagcg gctgctgcca atggatggac tgaccaggag       840
     aaagcagcgg cacttgtcat cgcgctgcgt ggccctgccc tggaactcct gcaaactatt       900
     cctgcagccc aacagcagga ataccaaact ttggtcgctg cactggacag aagatatggc       960
     gaccaacatc gacgccaact ttaccaggcc cagatcaaga cacgcctgca gaggtccgga      1020
     gagagtctgc aggaatttga agcagactta cgtcggctgg tacacctagc atatccagaa      1080
     gcaccggaag gatttaggga ggaactcgct gctcagtgct ttatcagcgg actgagggac      1140
     aacgaattac agagggcgct gcaaatatcc cgattttcta ccagcagcga agcactggtc      1200
     agggcgctgg aaatcgaagc tgcttttagc gccatcccta gaccgaagat aagatcggta      1260
     acggtcgagg aacagcccga aagtactcac agaggtttgg aggagatgtg taagaaagtc      1320
     gacaaactat gtgagctact aataaacaag ggaatcaaca acacccagac agagaaccag      1380
     agaagatccc aggacataag gtgctttaga tgtggcagga atggccacat tcaaacggga      1440
     ttgccgcgtt caaatgcgat cccgttcacc atccagagaa cgtaggcacc aggaaaacta      1500
     aaatcagtca atactaaggg gcgagtattg actggggaga acagagcccc caggattttt      1560
     tccattagaa gtctaggaag aaccgctgac agtttggtga tcgacgggaa agtcaatgga      1620
     aagggaatcc gaatgacagt ggacactggc gctatggtat cgttggtgcg ggctaactca      1680
     gtgcaaggat tgaagctgat gcctctgaga agaagagtgt gtttacgtac agttacgggg      1740
     gaaatggccg ttgtacgggg agaggctatc gtcgaactga agttaggaaa tttgaagttc      1800
     cagcatagcg ttttagtggc agatattgaa gatgacttca tcttgggcat ggatgtgatt      1860
     cgtcaacatg gattttcgtt cgatcaccag agaaatatct taaatattgg aaatgaagag      1920
     tttatgttat ctccagacga gggaccagga agaatggatg taagatcagc ggaaactgtg      1980
     gtgatacctg gtaataccga gaagatcgta ttcggtaaag tggagaaaat cgctgggtgc      2040
     tgtgttggac tggtacaaag tagcgacaag aaacaagata ggtacttagt aggaaaatca      2100
     ttggtgaaca ccgacaagaa tataccgatc agaattgcga atgttttccc gaattgtgtc      2160
     aagattcaaa aaggtgacaa gatagccatc tgcgaacctg taagaagtgt cacccgatgt      2220
     gatgaagtgt cgtcagctgt tacacaaaag gcatcccaag aaacactaaa acatctagaa      2280
     cagccatggg atcacctaac atctgaggag aaacagaagg ctaagcagtt cctgctaaag      2340
     catggcagta ttttgagaaa gaacaacagt ggaagaacgg attttgtgaa gcaccggatt      2400
     aatactggtc atgctcagcc gattcgacaa cgtcctagaa gggtgcccct ttccaaacaa      2460
     caagaaatgg agacaatggt agataagatg ctagaagatg gagttatcga agaatcatcg      2520
     agtccatggt catctcctgt tgttttggtg acgaagaaag atggtagtac acgattctgc      2580
     gtggactatc ggaagctcaa tgacgtcact aagaaggaca gctacccact gccacgtata      2640
     gacgacacgt taaccacact ggcaggttcg tgctggttct ccactctcga cttaaagagt      2700
     ggatactggc aagttggtct ggacgaggaa gacaaagaaa agacggcttt ttctacagga      2760
     aacggactat accaattcaa ggtcatgccg tttggattat gcaatgctcc agccactttc      2820
     gaacgtctca tggaggtggt gttaagagga ttaacttgga aaacgtgctt ggtttacctc      2880
     gacgatgtat tggttatggg aagaactttt gaggagcatt tgcgaaattt agaagaagtc      2940
     ttcggccgca tacggaatgc tcacctgtac ttgaacccga agaagtgtag cttattccag      3000
     cgacaagtgg aatttttggg ccatgtagtc tcagcagacg gaatttacac cgaccagaag      3060
     aaaatcgctg caatcaagga ttggcctaaa cctcgcgaca aacatgaact tagaagtttt      3120
     ctgggtttat gcacctatta cagaagattt gtcaagggat ttgccaatat agctgcaccc      3180
     ttacatagac ttacaggtga tgaagtcggc tacgaatgga acaccgattg tgatgtagcc      3240
     tttggaagac ttaaggcggc tttatgttca agtcctattc tagcctaccc gcaacaacaa      3300
     gggaggtata tcctggatac cgacgccagc aatatcggca taggtgcagt gctatcacaa      3360
     gtgcaagatg gcgaagaacg agtgatagaa tattacagtc gagttctatc caaaccagaa      3420
     aggaattact gcgttacccg gaaggagctg ctagcaattg tgaaggcagt tgatcatttt      3480
     cataaatatc tgtacggcca agaattttta attaggacag atcatgcggc tctcaagtgg      3540
     cttatggaga tgaaacaacc tgaaggtcaa atagcacgat ggctcgagaa gctccaacag      3600
     tatcacttta ccatccaaca tcgtgctgga aaaatgcatg gtaacgcaga cggtttatcc      3660
     agaagaccct gtcaaaccga ttgtaagcac tgctgtaaaa cggaacaacg tgaaggcact      3720
     gtcatgataa ggagttttaa acttggaacc gatgaacagt ggacgacgac acaattgagg      3780
     aaagatcaaa tggaagatcc agacatcgga gcaatactac ggctcaagga aggtaacggc      3840
     gagagaccac cgtggcagga tattgcggac agagggctcg ttttcaaagc tctctgggct      3900
     cagtggaatt cactggttat tgagaatgga ttgttaaagc gcacatggga aagtgcggat      3960
     ggcagcacag taacaactca gttactggta ccaaggaaga aagttaccca ggtattggaa      4020
     gaaattcacg gtggtaaaac tggagcccat cttggggtaa acaagacctt gagcaagctg      4080
     agagatcgct tttactgggt ggattattgc gaagatgtca agaaatggtg tcgacaatgt      4140
     aaaatttgtg cagccagcca aggaccaagc actcgatcta ggggaaaaat gaaacaatat      4200
     aacgttggac tgccattcga aagaatcgct gttgacattg caggcccatt ccctgaaacg      4260
     cacaagggca acaagtacgt tttagtggcg atggattatt tcagtaaatg gccagaagtt      4320
     tttgccattc caaaccaaga agcatcgact gtagctgaag tattagtcaa taatgtcttc      4380
     agtagatttg gaattccttt agagcttcac actgaccaag gaaggaactt cgagtcaaga      4440
     ctgttccaga agatgtgtga tctgcttggt attcacaaga ctaggacaac agctttacat      4500
     ccgcagtctg atgggatggt cgagagattc aataagacca ttgaagaaca tctctcgaaa      4560
     atggtggatg aacatcaaag agattgggat cagcatatac cactattcct aatggcatat      4620
     agaagtgcag ttcacaacac caccggactt tcaccatcga agattttatt tggtcgagaa      4680
     ttacggttgc cttgtgactt ggtgttcgga tcaccagacg acagcaccac gaacgtagag      4740
     gactacgcgg atgaactgaa ggaaaggtta ttgggaattc ataaggccgt gagaagtaag      4800
     attacgctag ccagtgaccg gatgaaagct cgttacgacc tcagagctaa ttctacggga      4860
     tttcaacagg acgatatggt atggttatat aacccacagc gcaagaaagg gaggtcccca      4920
     aagttaactc cagcatggga aggtccttat acagtcatca agaggataaa tgatgttgtg      4980
     taccggattc aacgcagccc tagaagtaag atgaaagtag ttcatctgga tcgattgaag      5040
     agataccaga caggaaacct tgatcgggac gatcaaattt gagaaggggg caa             5093
//
ID   Gypsy-2_SiOr-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-425
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 327-327 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~% identical to consensus. -bp TSDs.
XX
SQ   Sequence 425 BP; 148 A; 63 C; 95 G; 119 T; 0 other;
     tgtcaagaaa aatggcgcat ccgccagaaa ttaaaaatgt attactggtt gcctgcacaa        60
     ccgcaacgta tccgccagaa attaaaagac tttttcaggc gccatctttt agtcaagtcg       120
     agaagtaagg gaatcagaca atagaattgt ctggtatgaa gaagtacgct ttccgagaat       180
     tggggaaatt tcgagaagca gtcaatagag tatataagcc ggagccatcg acaactgaga       240
     cagtttttga aatttgaata taccgcgtgg aaattgaaaa taccggacaa tattggtgaa       300
     ggaatcttat aaatagttag tttgttgtgt gttataagtt agtaattgtg tataaagtga       360
     gacaaataaa ttcgttaagt attttatcgt gagtttaaat tagtggaccc acggaatccg       420
     taaca                                                                   425
//
ID   Gypsy-2_SpEx-I repbase;    DNA;    INV; 3215 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3215
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4063-4063 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..2298
FT                 /product="Gypsy-2_SpEx-I_1p"
FT                 /translation="MSKNTNAGDSPDHEQFWCTKDAVPSFSGQDKTYPVSK
FT                 WIQDIEDNGDIFQWSPIQQLLVARRSLTGTAALWFRAEKTFKTWEELKTAI
FT                 SKEFPDTLDQKTVHELMSARKKKPSESLLEYLYTMKELGKRGKMPDYIAIR
FT                 YIVDGIPDLESNKIMLYGVTTYSDLKDKFKIYEMVKEKMKVRMLSTRSKQQ
FT                 AEAVSHSDHYKPFQRRCFSCGDRSHMLDQCPHSGKGKKCFHCNDFGHISAE
FT                 CPSKKHANATPSTSRTYTYTQSRKDGGGAERTTRTIERNEYQRSRSTPHEA
FT                 TPRPPKQIYFTTNECGAIDDVMHDVHVVNTDMKCATIHERNATYDSDSSNR
FT                 SIDVIDRDVKDNNNIALFTSRSRQKPLKTVKICGKTAEALVDSGSDINLIT
FT                 DEWRRQLGLSVNSDSVSVSGLGLSIIKTSGSCTMDIIIDDKKYENVKFYVI
FT                 SKSEMPFCIILGNDFLQRVTMCMSGNSVWFGTKDDEWLNCMLSEVNVCSDF
FT                 PSTDHIKDTEVRYKVQQLVQSYIPRQSKESPIQMKIIVKDDVPVAQRPRRI
FT                 SLKEQQEVETQVREWLDKGIIRVSHSEYASPLVLVRKKDGSLRMCVDYRKL
FT                 NQKIVKDEFPLPLIDDCIDKLSGGRYFSVIDLKNGFFHLPISEESIKYTAF
FT                 VTHHGQYEFLRAPFGLSICPNYFMRFVSIVFRDLISSGKVIIFIDDIIIPA
FT                 LNEQMAVTRLMEVLEVAEYGLQINLEKS"
FT   CDS           2246..2950
FT                 /product="Gypsy-2_SpEx-I_2p"
FT                 /translation="WKFWKLQNMDCRLIWKKASLITPKITFLGHIIENGEV
FT                 RPSLEKTEATGVPRANGQVKRVHRTIISVLTKLCIENPSLWYRHVSQVQRA
FT                 INSTFHRSINTTPFELLTGVKLKTGKNEEICKLIQQEEIDEFADRREQLRL
FT                 KAMEQILKVQDENERNYKRRRKESTKYYVGELVAIKRTQFGGGLKLKPKFL
FT                 GPYKVTKVKGNDRYDVEKVYNGDGDGPNRTSTSVDNMKKWPVVVE"
XX
SQ   Sequence 3215 BP; 1076 A; 547 C; 750 G; 842 T; 0 other;
     gttttggggg ctcgtccggg atcaaggatt agtgctgcgg atacataccg acgaagacgc        60
     cacgaagtga agaatcacga cgacgacgct tacgactata acgatttcaa aagaatgtcg       120
     aagaatacca atgccggtga ttcaccagac cacgagcagt tctggtgcac caaggacgcc       180
     gttccatctt tcagcggaca ggataagaca taccccgtct cgaaatggat tcaagacatt       240
     gaggacaacg gagacatatt ccagtggtcg ccgatacaac aattactcgt cgccaggcgc       300
     tcgcttacgg gtacagcagc gctctggttc cgggctgaaa aaacgtttaa gacatgggag       360
     gagctgaaga cggccatctc aaaagaattt cctgacacgc tcgatcaaaa aactgtgcat       420
     gaattaatga gtgcacgtaa gaaaaaaccc agtgagtcct tattggagta tttatacacg       480
     atgaaggaat taggaaaacg aggtaaaatg ccggactata tcgccatccg ctacattgta       540
     gacggtatac ctgacctaga gagtaataag atcatgcttt acggtgttac aacatattcc       600
     gacttgaagg acaaattcaa gatttacgag atggtgaaag aaaaaatgaa ggtgagaatg       660
     ttaagtacgc gtagtaagca gcaagcggaa gcggtgagtc acagcgatca ctataagcca       720
     tttcaacgaa gatgttttag ctgcggcgat cgaagccaca tgttagacca gtgcccgcat       780
     agcggtaaag gcaagaagtg ttttcattgt aatgatttcg ggcatatttc ggcagaatgt       840
     ccgagtaaga agcatgcaaa tgcaacgcct tcaacttcaa gaacatacac atacacgcaa       900
     tcaagaaaag atggcggcgg tgctgaacga acaactcgaa caattgaacg caacgaatat       960
     caacgaagtc gctcgacgcc acacgaagct accccacgtc cgccgaagca gatctacttc      1020
     accacgaatg agtgcggtgc gatcgatgac gtcatgcacg atgttcatgt cgtcaatacg      1080
     gatatgaagt gcgccacgat tcatgaacga aacgcaacgt atgacagtga cagctcaaac      1140
     cgttcgattg acgttataga tcgagatgtc aaagacaata acaacatagc attgtttaca      1200
     tcaagatcgc gccagaaacc gctgaagacg gtgaaaatat gtggtaagac agcagaagcg      1260
     ctggtggatt caggcagcga tattaatctt attacggatg agtggcgtcg tcagctggga      1320
     ttgagtgtca acagtgatag tgtctcggtc agtggtttgg gattgtcgat aataaaaacc      1380
     agtggttcgt gcacaatgga cattattata gacgataaga aatacgaaaa cgttaaattc      1440
     tatgtaattt cgaaaagtga aatgcctttt tgtatcatat tgggcaatga ttttttacaa      1500
     agagtgacaa tgtgtatgag tggtaattct gtgtggtttg gtactaaaga tgacgagtgg      1560
     ttaaattgca tgctaagtga ggttaatgtg tgttctgatt ttccttccac agatcatatt      1620
     aaagatacag aggtaagata taaagttcaa cagttagttc aaagctacat acctcggcaa      1680
     agtaaggaat cacctataca gatgaaaatt atagtgaaag atgatgtccc tgtagcacaa      1740
     cgtccccgaa gaatttcatt gaaagaacaa caggaggtag aaacacaggt tagagaatgg      1800
     ttggataaag gcatcattcg ggtgagccat tctgaatatg ctagtccctt agtacttgtc      1860
     cggaaaaaag atggatcatt aagaatgtgt gttgattata gaaaattgaa ccagaaaatt      1920
     gtaaaagacg aatttcctct tccgttgatt gatgattgta ttgataaact atcaggtgga      1980
     agatatttta gtgtgattga cttaaagaat ggattttttc atttacctat tagtgaggag      2040
     tccataaagt acactgcttt tgtaacccat cacggccaat atgaattttt aagggcgcct      2100
     tttggactat caatttgtcc aaactatttt atgaggtttg tgtctatagt gttcagagac      2160
     ctgatatctt caggtaaagt tataatattc attgacgata taataattcc agctttaaat      2220
     gaacaaatgg cagtaacaag gttgatggaa gttctggaag ttgcagaata tggactgcag      2280
     attaatttgg aaaaaagcta gcctgattac cccgaaaatt acctttcttg gacacataat      2340
     tgaaaatgga gaagtacgac catcgttaga gaaaactgaa gctactggag tacctcgtgc      2400
     taatggacag gtgaaacgag ttcacaggac aataatatct gtactcacga agttatgcat      2460
     tgagaatccg tccctatggt atagacacgt cagtcaggtt caaagagcta tcaacagcac      2520
     atttcataga agcataaaca caactccatt cgaattgtta acaggagtca aactgaagac      2580
     aggtaaaaat gaagaaatat gcaagttgat acaacaggaa gaaattgatg agtttgctga      2640
     caggagagag caactccgat taaaggctat ggaacaaatc cttaaggtac aggatgagaa      2700
     tgaaaggaac tataaaagaa gaaggaagga aagtacaaaa tattacgttg gggaattagt      2760
     ggctattaag cgcactcagt ttggaggcgg gctcaaattg aagccaaagt tcttaggtcc      2820
     ctacaaagtt acaaaagtta aagggaacga ccgttatgac gtagaaaagg tatataatgg      2880
     agatggagat ggacctaaca ggacttctac ttctgtggac aatatgaaaa agtggccagt      2940
     agtagtagag taaaggtaca tatttttaca cattttcatt ttgggtatga aagggatgaa      3000
     tgtcagttgt cttagaaata ggtttttttt tcaagtgttg ttaaagttct tatttgttaa      3060
     gtactaagaa atgtttagtt atataagaag ataccatgtt tagttttatg agttttcagc      3120
     tgttatgttt tgtgatgtaa ctttaaaaat agatatattt aagttttatt gtatgtatag      3180
     tgtctgaggg cagacactct gtcaggatga ccgaa                                 3215
//
ID   Gypsy-2_SpEx-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-261
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4073-4073 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 261 BP; 90 A; 40 C; 60 G; 71 T; 0 other;
     tgtgggatgt gaatatttcc gaacgagtga gatgtgtgta aggtaatgct agtttctaaa        60
     cgaatgtgtg gaagtaagag agaatgaatg agcgagtgag atagagcaat ttccgaaaaa       120
     agaacaggta atgagacgaa tgacaggacg gacacgtttt ttttgtttta accacgacga       180
     attgacaaat acacgattat tacgattttt cctacacaaa acgaagtatt tttaatatcc       240
     tgcgaaccct tgatccccac a                                                 261
//
ID   Gypsy-2_SpFr-I repbase;    DNA;    INV; 4298 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4298
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1878-1878 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. The consensus is ~80% identical to
CC   that of Gypsy-11_HR-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1175
FT                 /product="Gypsy-2_SpFr-I_1p"
FT                 /translation="MDQLRFEFALMPASDGKSNVCCVTSITTKDEKVFVIP
FT                 EELQSVSLHKELIKTAAYNKVKNSLKKRHQTRKVWMTMSDELRKVYIDEDG
FT                 NLQFGEQYLEEIEQKQTSGGLEKNTDSLEKLFAKLIENTQDQKKQNLKYIA
FT                 EKFVIEKFTSKNTNPNQWIDIFEKECLRFDILEDEKKIEILRLFMDKSCVD
FT                 WYSSMIIKLTLNSDWQIWKNKFCESFANQGWNQVTYALFFKYKDGSLVDYA
FT                 IKKEKLILDMRRSIDTGTLVDLIAAGLPGFVREKINREAMKDTVDLFNEVR
FT                 KYEHLVNKNRNGVYRKFENQKINNKIEERTPCKTCEKLNKGTRYHPEAACW
FT                 FKVKDDNTFDRKSIRHVNNSVIEAELNENEQKN"
FT   CDS           1160..4249
FT                 /product="Gypsy-2_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KRTKKLIVTPLIRVKLLINDKLEIYGVYDSGSNVSLI
FT                 NSKLLKLKTKKNNANEENLVTINGVKKTSGLTNLKIKIFEKEENVNVYVID
FT                 EPNFKYDFLIGLDMIKAYELIQNEELKITQKQYLRQENIKQEEEIYKKKNE
FT                 SKEYVKEYKINFNEHIKEKEFEIKVNHLEEDKREKIYKLIQKYKSVFAKDK
FT                 YDIGTVNGYEARIDLLVDKYCCKRPYKCTIEDKKEIEKQIANLLDNKLIEE
FT                 SYSPFAAPVTLAFKREENKKSRLCIDFRELNKIVVPQAQPFPLIEDLMEKT
FT                 RNCMYFTALDINSAFWAIPLRIEDRRKTGFITQEGHFQWTCLPFGLKTSPA
FT                 IFQRILSSILRKYNLTSFTVNYIDDILVFSRNFEEHVNHLEQLLEAIQLEG
FT                 FRLKFTKCNFASDTVKYLGHIIQNNTVKPIKDNLISIKDFPTPKTQKNVRQ
FT                 FLGKINFYHKYIPNSATILDPLHNLLRKNQQFIWSHECEKAFNTIKALLCS
FT                 QPVLEIYDPNLPINIYTDASIEGVGAILKQIQPDGREKPVAYFSKKLNGTQ
FT                 KKKKAIYLECLAIKEAVRYWQYWLIGKSFTVYSDHKPLENMNLKSRTDEEL
FT                 GDLMYYLSQYDFNIKYAPGKDNLEADCLSRNPVLGSDENKDEQLRIVNVIN
FT                 LQDILIDQNKNEEIQKNKDRMIKKQNIYYKKVRNKEKIMLSEKFSIELINK
FT                 VHKNLCHIGIKQMQKTLSPLYIARNLTENIKKISKNCEICIKNKSRGQGKI
FT                 GFMSHLGPATKPFEIVSIDTIGGFGGSRSTKKYLHLLVDHFTRYAFVLTSK
FT                 TQGANDFIKLVTNISETDNIGMILTDQYPGINSKEFKRFLAEKQIPMIFTA
FT                 VNAPFSNGLNERLNQTLVNKIRCKINEEENTRAWTKIAHECVEKYNKTIHS
FT                 VTGFSPSYLLYGTDATILPKELKEEKTQQDWIRDRTTALENTIKSHNYNKI
FT                 LFDKNREYHEFNVGDMVYVENGNKLNRKKLDHLRIGPFQIIEKISKSIYRI
FT                 DTGHKKTESNLFHVTKLVPVSVYL"
XX
SQ   Sequence 4298 BP; 1828 A; 563 C; 749 G; 1158 T; 0 other;
     aaacgacaat cttgtttatt gaaataccta aataaataaa gcaaaatatg gatcagctac        60
     gtttcgaatt tgctttaatg ccagcgagtg atgggaaatc aaatgtctgt tgtgtaacct       120
     caataacaac aaaagatgaa aaagtgtttg ttataccgga agaactacag tctgttagtc       180
     ttcataaaga gttaataaag acagctgcgt ataataaagt gaaaaatagt ttaaagaaaa       240
     gacatcaaac gagaaaagtt tggatgacaa tgtcagatga actaagaaaa gtatacatag       300
     atgaagatgg taatttacaa tttggagagc aatatctaga agaaattgaa caaaagcaaa       360
     catctggagg attagaaaaa aatacagatt cattggaaaa attatttgca aaattgattg       420
     agaacacgca agatcaaaaa aaacagaatc taaaatatat tgcagagaag tttgtgattg       480
     aaaaatttac aagtaaaaat acaaacccaa accaatggat tgatattttt gaaaaagaat       540
     gtttacgttt tgacattttg gaagatgaga aaaaaattga aatactaaga ctattcatgg       600
     acaaaagttg tgttgattgg tacagttcta tgattataaa gttaacacta aactctgact       660
     ggcagatatg gaaaaataag ttctgtgaat catttgcgaa tcaaggctgg aaccaagtga       720
     cttatgccct tttttttaaa tacaaggatg gttcattggt ggactatgct attaaaaagg       780
     aaaaacttat tctggacatg agaagatcaa tagatacagg tacgctggtg gatttaattg       840
     ctgcaggttt acctggattt gtgcgggaga agataaatag agaagcaatg aaggatacag       900
     tagacctatt caatgaagtg agaaagtatg aacatttggt aaataaaaat aggaatgggg       960
     tctatagaaa attcgaaaat caaaagataa ataacaaaat tgaggaacgt actccatgca      1020
     aaacatgcga aaagcttaat aaaggtactc gttaccaccc cgaagctgca tgctggttta      1080
     aggttaaaga tgacaataca tttgatagaa aatctataag gcatgtgaat aattcagtga      1140
     ttgaagcaga gttaaatgaa aacgaacaaa aaaactaata gtaacaccat taataagagt      1200
     caaactacta ataaatgata aattggaaat atatggagta tatgattcag gttcgaatgt      1260
     ttctctcatt aattccaaat tattaaaatt aaaaaccaag aaaaataatg caaatgaaga      1320
     aaatttagtt acaattaatg gtgtgaagaa gaccagtggt ttgacaaatc taaaaataaa      1380
     aattttcgaa aaagaagaaa atgtaaatgt ttacgtcatt gatgaaccaa atttcaaata      1440
     tgatttttta ataggattag acatgataaa ggcatacgag ttgatacaaa atgaggagtt      1500
     aaaaataact caaaaacaat acttacgtca agaaaacata aaacaagagg aagagatata      1560
     caagaaaaaa aatgaaagta aagaatatgt aaaggaatat aagattaatt ttaatgaaca      1620
     tattaaagaa aaggaatttg aaataaaagt aaatcattta gaagaagata aaagggaaaa      1680
     aatttataaa ttaatacaaa aatataaatc ggtttttgcc aaggataaat acgatatagg      1740
     aactgtgaat gggtatgaag ccagaataga cttattagta gataaatact gctgtaagag      1800
     gccttacaaa tgcactatag aagacaaaaa agaaatagaa aaacaaatag ctaacctact      1860
     agacaataaa cttatagaag aatcatacag tccatttgcg gcaccggtga cattagcctt      1920
     taaaagagaa gaaaataaga agtcaagatt gtgtattgac ttcagagaac taaataaaat      1980
     agtggtacct caagcccaac cattcccttt aattgaagat ctaatggaaa aaactagaaa      2040
     ttgtatgtat tttacagctt tagacataaa ttctgcattt tgggctattc ctttacgaat      2100
     tgaagataga agaaagacag gatttataac acaagaagga catttccaat ggacttgttt      2160
     gccatttgga ttgaagacct caccagcaat ttttcaaaga atactcagta gtatactaag      2220
     aaaatacaat cttacaagct ttacagtaaa ctatattgat gacatattag ttttttctcg      2280
     gaattttgaa gaacatgtaa accatttaga acaactgtta gaagcaatac aattagaagg      2340
     atttagattg aaatttacca aatgcaattt cgcatcagac accgtaaaat acttgggtca      2400
     tataatacaa aataatactg taaaaccgat taaggataat ctaatatcaa taaaggattt      2460
     tccaactccg aagactcaga aaaatgttag acaatttttg ggaaaaataa acttctacca      2520
     caaatatata ccaaatagtg caactatact agatccacta cataatttgt taaggaaaaa      2580
     tcaacaattc atttggtccc atgaatgtga aaaagcattt aatacgataa aggctttact      2640
     ttgttcacaa ccagttttag aaatatacga tccaaacttg ccaataaata tttacactga      2700
     tgcatcaata gaaggagttg gagctatatt gaaacagata caacctgatg gaagagaaaa      2760
     accagtggca tacttttcaa agaagttaaa tggaacccaa aaaaagaaaa aagccattta      2820
     cttagagtgt ttggcaatta aagaagcagt acgatactgg caatactggc tgataggtaa      2880
     gtcatttaca gtttattcag accacaagcc actggaaaac atgaatttga aatcaaggac      2940
     cgacgaagaa ttaggtgatt tgatgtatta cctgtcacaa tatgatttta atattaaata      3000
     tgctccggga aaagacaatt tagaagcaga ctgtcttagt agaaaccctg tattgggatc      3060
     agatgagaac aaagatgaac aactgaggat tgtaaatgta attaacctgc aggatatttt      3120
     aatagatcaa aataaaaatg aagaaataca aaagaataaa gacagaatga taaaaaaaca      3180
     aaatatatac tataaaaaag tcaggaacaa ggaaaaaata atgctatcag agaaattcag      3240
     catagaactt ataaataaag tacataagaa cctttgtcat attggaatca aacagatgca      3300
     gaaaacactt agtccactat acatagctag aaatttgacg gaaaatatca aaaaaataag      3360
     taagaattgt gagatttgta taaaaaataa atcaagagga caagggaaaa ttggatttat      3420
     gtcacactta ggtccggcca cgaagccatt tgaaatagtc tctatagaca caattggagg      3480
     ttttggagga tcaaggtcta caaagaaata tttacatcta ctggtagatc attttacaag      3540
     atacgcattt gtcctgactt caaaaaccca aggagcaaat gattttataa aactggttac      3600
     aaacatatca gaaacagata atatcggaat gattctcacc gatcagtacc ctggaataaa      3660
     ttcaaaagaa tttaagagat tcttagcgga aaaacagatt ccaatgatat tcacagcagt      3720
     aaatgcgcca ttctccaatg gtcttaatga gaggttaaac caaacattgg taaacaaaat      3780
     tcgatgtaaa attaatgaag aggaaaatac acgagcttgg acaaaaatag ctcatgaatg      3840
     tgtagaaaaa tataataaaa ctattcactc agttactggt ttttcaccaa gttatctttt      3900
     atatggtaca gatgctacga ttttacctaa agagttgaag gaagaaaaaa cacaacaaga      3960
     ctggataaga gatagaacaa cagctctaga aaatacaata aaatctcaca attacaacaa      4020
     aatattattt gataagaata gagaatacca tgaatttaat gttggtgata tggtgtatgt      4080
     ggaaaatggc aataagctga acagaaaaaa attagatcat ttgagaattg gtccttttca      4140
     gattatagaa aaaatatcca aatcaatata tagaattgat actgggcaca agaaaactga      4200
     gtcaaattta tttcatgtca cgaagcttgt tccagtatcc gtatatttat agattttctt      4260
     ttccactttt atagattttc ttttccaagg gggggaga                              4298
//
ID   Gypsy-2_SpFr-LTR repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-391
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1860-1860 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 391 BP; 136 A; 33 C; 53 G; 169 T; 0 other;
     tgtaaagtaa aatactatac tattttcttt aatttttagt ttgaatgaaa cctattttat        60
     tttattttat gaaactattt tgtttgtggt aaatgtgaca ttgggtgtca agattatttt       120
     tctattaaag aaaagatgga tgttatttta gttaaatatt tctttattta aaatgtaact       180
     cacaattgtg aagaaagaga tatctaagaa taaactttaa ttgtcgtttc ttcatttaca       240
     ggttgatttt gattttgtta tgcacttgta aatgaatcaa tgtaagtttt aagatgttat       300
     ttttgttata aaatgtgtaa aaataaaatt cttcatttac agagcaacgc aagtttattc       360
     ttcaaaccta taattagaga ataatcttat a                                      391
//
ID   Gypsy-2_TCa-I repbase;    DNA;    INV; 4498 BP.
XX
AC   ChLG3;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_TCa_;
KW   Gypsy-2_TCa-LTR; Gypsy-2_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4498
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG3; Positions 29081813 29077316.
XX
CC   Positions [1742-2245] - Reverse transcriptase
CC   Positions [3354-3863] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..3535
FT                 /product="Gypsy-2_TCa-I_1p"
FT                 /translation="MGTEKVVADMMTMFTDALRVMEQNRVASEERLMKMML
FT                 EQQNRGTTIQTVPDFSKSVETFDGDCESGAAIEWLEKINVTAEIHSWSNEC
FT                 CLETARNHLVGAARKWYDAHRTEIKTWTDFVTQFKKTFEIRVSTTECWRQM
FT                 QSRQQIPGESVSTYFHDKFQLCQKLKLPFAETKEQIVVGLSNKNIVQGLVA
FT                 KSHTDADELLHDIIEFSRILNNSRAFSGINERSKKPSKNINEIKCYNCLQA
FT                 GHLASKCTQPKQTICFQCKQTGHVAKDCKNSYGEKSQNFSRKPVATVKKEV
FT                 SLISSHQKPREDSDGIEKYLRVTKVDDVNIHAMIDMGSSVCTVRSSVVKEN
FT                 NWPITRKDVQLFGFGNNSPIPCLGVVNAGIQIDEVRVDNVDICIVADDAQS
FT                 VDMIIGRPFTENENLIYLRVDDKLIFKKREDFPFSEWEISTDEHKKTAEDS
FT                 EVVSEECEITEDQIIVDPSTPPEITHELIKLFNEFRSCFAFNLKELGCTDV
FT                 MKMKIRDTNVPVSAKPYRASLREREIIKNIVRDWKENGIVTETNSQYASPV
FT                 VLVQKKSGEPRLVVDYRRLNKQTEKVPFPIPSIDEQFEMLSESRIFSTLDL
FT                 AHGYLQIPLDEESKEKTAFITPDETGQFERLMFGLTNGPYEFCRLMHIVLG
FT                 PLRNKVCMTYIDDILLGAKDWTDMLDKLKMVLTALKKAKLTLKLRKCVFGL
FT                 KEVEFLGYTISSEKMQPAKSKMRAISEFPTPKNIHELKRFLGLTSYFRRFL
FT                 RNYAIRARPLTDLTRKTQTFTWGEDQSAAFEDLRDSLCAEPVLKLYNPKAT
FT                 ITELHTDACSAGVAGMLLQTDSAGQLHPVYYISKKTTDVEEKYHSTKLELM
FT                 AVVWCIERLRNLLIGLKFVVYTDCQAITFLNNFKTQNAQICRWFNLLQEYD
FT                 VEIKHRPGGRMAHVDALSRAPVDDSQDTLDHIHERLEVLQTLDETDYVLMI
FT                 QYGDAELRELIQILKKPNEERTPVERQRVLPYKLDSARLLRNVNVNGSGKW
FT                 LYVIPKSMRKSIVVKHHDQLGHFGVDRTVAKIRERYWFAKMKQYVQRHISA
FT                 CAECLLNKIPSGKRPGELHPPRPPRRPFEKNSFRPCRPFSKNRRRKFLHSC
FT                 GNRCFNEVCETVPHEEYKIQ"
XX
SQ   Sequence 4498 BP; 1531 A; 810 C; 999 G; 1158 T; 0 other;
     atcagaagtg ggattttccc aaaaagtcca gtgtgtggag aaaataagtg agcgcgtgtg        60
     tttggcgttt gtaaaagtgg tgttacagcg tcattcaatt tttctctttt gacgaattgc       120
     gatcagccga tcagtggaag aaatcatcat catgggtacc gagaaggttg ttgcggacat       180
     gatgacgatg ttcacggatg ctttacgagt catggaacaa aaccgtgttg ccagcgaaga       240
     aagactaatg aaaatgatgc ttgaacaaca aaatcgtgga acaacgattc aaactgtgcc       300
     cgatttttcg aaatcagttg agacatttga tggcgattgt gagagtggtg cagcaatcga       360
     atggttggag aagataaacg tcacggcaga aatccattcg tggtcaaacg aatgttgctt       420
     ggagacagcc aggaaccatc ttgtgggagc ggcaagaaaa tggtatgatg cccatcgcac       480
     ggaaatcaaa acatggaccg acttcgttac ccaatttaag aaaaccttcg aaatcagagt       540
     aagcacaacg gagtgttggc gacaaatgca aagtaggcaa cagatacccg gtgagtctgt       600
     atccacatat tttcacgata aattccaatt gtgccaaaaa ttgaagttac ctttcgcgga       660
     aacaaaggaa caaatagttg tgggactatc gaataaaaat attgtgcaag gactagtcgc       720
     gaaatcgcat acagacgcgg atgaacttct tcatgacatc attgaatttt cgagaatttt       780
     gaataattcg cgcgcgtttt ccggtataaa tgaacgttcg aaaaaaccga gtaaaaacat       840
     taacgaaatt aagtgctaca attgtttaca agcgggacat ttggcgtcaa aatgtactca       900
     accaaaacaa acgatttgtt ttcaatgcaa acaaacgggt catgtggcaa aggattgtaa       960
     aaattcttat ggggaaaaga gtcagaattt ttcgcgaaaa ccagttgcaa cagtcaagaa      1020
     agaagttagt cttatttcgt cccatcagaa gccaagagaa gatagcgatg gaattgaaaa      1080
     atatttacga gtgacaaaag tagacgacgt aaatatccat gcaatgattg atatgggcag      1140
     ttctgtttgc acagttagaa gttcagttgt caaagaaaac aattggccca tcacgagaaa      1200
     agatgtgcaa ttgtttggtt ttggaaataa ttcaccaata ccatgcttag gtgtagtgaa      1260
     tgctggtatt caaatcgatg aagttcgcgt agataatgtt gatatctgca ttgttgctga      1320
     tgatgcccaa agtgtggaca tgattattgg cagaccattt actgagaatg aaaatctaat      1380
     ctatcttaga gtggacgata agctaatctt taaaaaacga gaggattttc ccttttcgga      1440
     atgggaaatt tcgaccgatg aacataagaa aacggcagaa gattcagaag ttgtttccga      1500
     agagtgtgaa attactgaag atcaaataat agtagaccca tcaactcctc ctgaaattac      1560
     acacgagcta atcaagcttt tcaacgaatt taggtcttgt tttgcattta atttaaagga      1620
     actaggttgc acagatgtga tgaaaatgaa aattagagat acgaatgttc cagtaagtgc      1680
     caaaccatat cgagcaagtt tgcgagaacg agaaattatt aaaaatatag tccgtgattg      1740
     gaaggaaaat ggaatagtga cggaaacaaa tagtcaatat gctagcccag tcgtcttggt      1800
     ccagaagaaa agtggtgaac ctcgactagt tgttgactac aggagattga ataaacaaac      1860
     tgaaaaagtt ccttttccaa ttccaagtat tgatgaacag tttgagatgc tgagtgaatc      1920
     aagaatattt tcgacattgg acctcgctca tggatatttg caaattccgt tagatgaaga      1980
     atcgaaggag aagactgctt ttataactcc agacgagaca ggccagtttg agaggttaat      2040
     gttcggatta acaaatggcc catatgagtt ttgccgatta atgcacatag tccttggtcc      2100
     actcagaaat aaagtgtgca tgacttacat tgacgacatt ttgcttggtg cgaaagattg      2160
     gacagatatg ttagacaagt taaaaatggt tttaacggct cttaagaaag caaagttgac      2220
     tttaaaattg cgtaaatgtg tatttggact aaaagaagtt gaatttcttg gctacacaat      2280
     ttcaagtgag aagatgcaac cagctaaatc caaaatgaga gccatatcag agtttccaac      2340
     gccgaaaaat attcatgaat tgaagagatt cttaggacta acaagttatt ttcggagatt      2400
     tttgcgaaac tacgcaatac gtgcccgacc tttgacggat ttgacaagga agactcagac      2460
     atttacgtgg ggagaagacc aaagtgcagc ttttgaagat ttgcgcgata gtttgtgtgc      2520
     tgaaccggtt ttaaaactgt ataatccaaa agcgactata accgaattac atacggacgc      2580
     atgtagtgcg ggcgtggcgg gaatgctact tcaaacggac agtgcaggac aactacatcc      2640
     cgtatattat atctcgaaga aaaccactga cgttgaggag aagtatcatt cgacgaaatt      2700
     agaactgatg gcggtagttt ggtgtatcga gagattgcgc aatttgttaa tcggactaaa      2760
     atttgtggtc tacacggact gtcaagccat aacatttcta aataatttta agacgcaaaa      2820
     tgcccagatc tgtcgttggt ttaatttgtt acaggaatat gacgtcgaga ttaaacatcg      2880
     tccaggtgga agaatggccc atgtggatgc cctttcccgt gctcctgtcg atgactctca      2940
     agacactctt gaccacattc atgagagact agaagtcctg caaacacttg acgagaccga      3000
     ctacgtgcta atgattcaat atggagatgc tgaacttcgt gagctaatcc aaattttgaa      3060
     aaaacctaat gaagagagaa caccagtgga acgtcagcga gtgcttccct acaagttaga      3120
     tagtgcgaga ctactcagaa acgttaacgt gaatggttct ggaaaatggc tgtatgtgat      3180
     cccaaaatca atgaggaaaa gtattgtggt gaaacatcac gaccaattag gacatttcgg      3240
     cgttgaccga acagttgcaa aaattcgaga aagatattgg ttcgcgaaga tgaaacaata      3300
     tgtacaaaga catatcagtg cgtgtgcgga gtgtttacta aataaaatcc catcaggaaa      3360
     gcgacccgga gagctacacc caccgagacc accacgacga cctttcgaaa aaaattcatt      3420
     tagaccatgt aggcccttta gtaaaaaccg acgacgaaaa ttcttacatt cttgtggtaa      3480
     tcgatgcttt aacgaagttt gtgaaactgt accccacgaa gagtacaaaa tccagtgaaa      3540
     gtgtaagcgc cttacaaaac tgtattgaca attacggaat accccgtctc gtagtggcgg      3600
     accagggttc atgtttcaaa tcagatgaat tcggtgaatt ttgcgacagc ttaggcatac      3660
     aggttttatt aatacctccc cggtggcctc aagcaaatgg acaagtggaa agagtaatgc      3720
     gaactcttat acccacatta atgtgcgaaa tggatatcga agaacaatgg gacaaaaaga      3780
     ttgtcaaggt agaacgcaat ttaaattcta tgttgaataa aaccactggt agagttccat      3840
     ttgaagccct tcatggatac ttacccgtgt tcgacgatgg aaaactcact aagcttgcag      3900
     aaggcgaaga ttgtacctgg actcctcccg aaagtatcca agcagaaatt cgtgaagcaa      3960
     ttgttgaaaa acaaaaagca tataaaagac gatatgataa gaagaagttc caaggtgtga      4020
     catacaacgt tggagacatc gttatgttca aaacctacat ccctggagga accggacaat      4080
     catcaaaaac taaagccaaa tatagaggac cattaacagt tattgagaaa ttgccttcgg      4140
     atatatatcg tatctccagt cttgcggatg agggacgcat ttttacgact acagccaatg      4200
     tttctcaact caaactctac agaaacccaa tcgaagacac agaacccgaa gacacagaat      4260
     ccgaagacag tgacagtagt gaagatgaac ttccacaaat cgaaactgtt gaagttcaga      4320
     tacattctac accagatgca attgtaaccg aagaactacc aaaacgaaat agacggatgc      4380
     caaagaaact ggctgactat aaactatttt aagtgatttt gtttcattag tgtattaaat      4440
     ttcattgctc cttgttttat gtcgagcgga ggtccgctcg aaggtcagaa tgaccgag        4498
//
ID   Gypsy-2_TCa-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   ChLG3;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_TCa_;
KW   Gypsy-2_TCa-I; Gypsy-2_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG3; Positions 29077315 29077133.
XX
SQ   Sequence 183 BP; 49 A; 25 C; 41 G; 68 T; 0 other;
     tgttagaata tttagttagt ttaggttatg aggttggtag tcagaaagta actaggggag        60
     aagctactgt gatggcgtcg gcctgaaatg tgtttttgtt gttaatcttc cgaaatcaag       120
     ttcatcatta aacttttgtt ttaacagact gtgttttgtg ttccctgaca ctcaaatcta       180
     aca                                                                     183
//
ID   Gypsy-2_TrNi-I repbase;    DNA;    INV; 4415 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4415
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 208-208 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           85..4314
FT                 /product="Gypsy-2_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSVGKVRDFDIKNGNWSAYVDRLEMYFVANKIAEDLK
FT                 LPTLIALIGEPAYELLSTLASPRKPSTLKYKEAVELLQAHLQPKPSILAER
FT                 YRFRQRRQSAGETIADYVADLKKMSRYCEFKINLEENLRDQFVCGLRSEYI
FT                 RQRLFAEDNIDYQKALVLANTLEAAERDAGAVEGTQEQTTSRELSERIHKL
FT                 ELNKCSACGVNGHGAHNCRYKEFECSYCGQPGHLRRVCRKKEFDRRIKSTI
FT                 SNRGNNGARGRSRRGRVIGSSAYGAGVWRSGNMARGGRSNARTARSNDVTD
FT                 AAYWLSEPAMDDNSGSEQDVEGTNEEPMYQMSLTNYKPVCIKLLINNKTLS
FT                 MEIDTGSALSCISKSTYKEHFKELPLKPCKMKVKFYDGSVIQPIGYLETDV
FT                 QYMKNMKKLDLYVIDKGTTNLLGRQWLSELNIEIPKFTRCNHIKLCKNKMF
FT                 NDIISRHDNLFDGTLGKYTGEEVKLCVRDGTEPVFCRARPVPYALLARVNA
FT                 ELDAMLRAGVIEPVERSDWATPLVIARKGDGGIRLCADYKVTLNKALLVDR
FT                 YPVPKVEDLFSNLSGNHYFTKLDLSQAYNQLILDETSRNYTVINTHRGLFK
FT                 YNRLVYGLSSSPGIFQKFMMNLFKNVQDVVIFYDDILIKNKSLESHLERVE
FT                 QVFSILERNGLKIKKEKCEFMVGQVKYLGFIIDKHGVRVDANKIKPILSMP
FT                 DPTNVSELKSFLGMVNFYGKFIKNLSTHITPLYELLKKGKHWQWTKTHRYV
FT                 FNKIKQLLCSTEVLTHFDISLESIVTCDASARGLGAVLAQRASDGSERVVA
FT                 YASRALTAAELHYSQIHKEALAIIFAVDKFHQYLYGRKFTLRTDHKPLVTI
FT                 FGPHAGIPNTAASRLQRWAIKLSAYDFNIEYIRSDKNTADILSRLISTHKE
FT                 GVISEELDTPEQTYLHFAAEALLLDYQTLKKETVSDSVLSRVARYINDGWP
FT                 VEVEMKELKPYFNRRKELYIELGCVMWGHRLVIPSTCRNKVIAELHESHMG
FT                 IVKTKSLARSYVWWPGIDEALETACCSCTVCAEVADAPPAHAPRAWPWPDR
FT                 PWTRIHVDFLGPVAGLTYLVVVDAHSKWIEAIRMLSTTSQAVIKELREMWA
FT                 RFGLPKQLVSDNGPPFFSGEFQQFLNNNGIEHIFSAPYHPASNGAAENAVK
FT                 ICKKSIKKAIKSKSDVHSTLCRFLLAYRNTPHYTTGESPAKMLLGRNLRMR
FT                 LDCLKPDQKALIRARQETVEATSSGVTRQFNPGDLVWFREYRSSNKWSAGT
FT                 VIEKTGSTDYNVKSIHGTEVHRHIDQLKPRVINRTARLVDANFRNFQPVQP
FT                 VKSSRSSLVFPSDNNRAPNTEPDRTNGTSLTKALVEETSRTQTDGSDLVTS
FT                 EPLSTSSVPLNMPKVQETGSPRVPITRDIRTSNRTRKPVKRYGFDDD"
XX
SQ   Sequence 4415 BP; 1392 A; 820 C; 1088 G; 1115 T; 0 other;
     gtggcgacga ggataacgga acgatattcg gtgcagaata aagtcttaaa ttattgtggt        60
     atagtgcttt gggggtgatt aaaaatgtct gttgggaaag ttcgagattt tgacataaaa       120
     aatgggaatt ggtcggcgta cgtcgatcgt ctcgaaatgt attttgttgc taacaaaata       180
     gcggaagatt tgaagttacc aacattaata gctcttatcg gcgaaccggc ttatgagtta       240
     ctgtctactt tggcgagccc gagaaaacca tcaaccctga aatataaaga agcggtggaa       300
     ttactgcaag cacatctaca gccgaaacca tcaattctcg cggagaggta taggttccga       360
     caaagacgcc aatcagcggg agaaacgata gctgattacg tggcagattt gaaaaagatg       420
     tcacgttatt gtgaattcaa gatcaattta gaagaaaatt tgagggatca gtttgtgtgc       480
     gggttacgta gcgaatatat acgtcagagg ttattcgcgg aagataacat agattatcaa       540
     aaagcgctag tattagccaa tactctggag gcagctgagc gggacgccgg ggccgtagag       600
     ggaacgcagg aacaaactac cagccgggaa ctaagcgaga gaatacacaa gttggaactc       660
     aataaatgtt cagcctgcgg ggtcaacggt catggggcac ataactgtag gtacaaggag       720
     ttcgaatgta gttattgtgg acaacctggc catttacgaa gagtttgtag aaaaaaagaa       780
     tttgatcgtc gcataaaatc tacgatttca aaccgcggga ataatggcgc gcgaggaagg       840
     tcacgtagag gacgcgtgat cgggtcgagc gcctacggag cgggtgtatg gcggagcggc       900
     aacatggcgc gcggggggcg cagcaacgct cgcaccgcac gcagcaacga cgttaccgac       960
     gcggcgtact ggctgagcga gccagcgatg gatgacaact ccggctcgga gcaagacgtt      1020
     gagggtacaa acgaggaacc gatgtatcaa atgtcactaa ccaactataa accggtgtgt      1080
     ataaagcttc taattaataa taaaacctta tcgatggaga ttgatacagg ctctgcgtta      1140
     tcctgtataa gcaagtctac gtataaggag cattttaaag aattaccttt gaaaccatgt      1200
     aaaatgaaag taaaatttta tgatggctct gtcattcaac caatagggta tttagagact      1260
     gatgtgcaat atatgaaaaa tatgaagaaa ctagatctct atgtgatcga taagggtact      1320
     actaatttac taggtagaca atggttatcg gaattgaata ttgagatacc aaaatttact      1380
     agatgtaacc acattaaatt atgtaaaaat aaaatgttta acgatatcat ttccagacat      1440
     gacaacctat tcgatggcac gttgggcaaa tataccggtg aagaagtcaa gttatgcgtg      1500
     cgggatggga ccgagccagt attttgtcga gcgcgccccg tgccttatgc attgctggcg      1560
     cgggtcaatg ctgagttaga cgcgatgctg cgcgccggcg tcatcgagcc cgttgaacgg      1620
     tccgactggg ccacaccgct agttatagcg aggaagggag acggtggaat acgcttatgc      1680
     gcggattata aggtgacact taacaaggct ttactggttg acaggtaccc ggtcccgaag      1740
     gtagaggact tatttagtaa tttgagtggc aatcattatt ttactaagct agatttgtca      1800
     caggcttaca atcaattaat tttggatgaa acttctcgga actacacagt aattaataca      1860
     cacagaggac tttttaaata caatcgcctc gtttatggtc tctcttccag tccgggcatt      1920
     tttcaaaagt tcatgatgaa tctctttaaa aacgtgcagg acgtagtcat attctatgat      1980
     gatattttaa taaagaataa gtcattagaa tctcatttag aaagagttga acaggttttt      2040
     agtattttag agaggaatgg gttgaaaata aaaaaagaaa agtgtgagtt tatggtaggc      2100
     caagtaaaat atttaggatt cataattgat aaacatggcg tacgggtaga tgcaaataaa      2160
     ataaaaccga tcctatctat gcccgaccca actaacgtct cagagttgaa gtcttttctc      2220
     ggtatggtta atttctatgg aaaattcatt aagaatttga gtactcatat tacaccactt      2280
     tacgaattac ttaagaaagg taaacattgg caatggacta aaacacatag atatgtgttc      2340
     aataaaatta aacaacttct atgtagtact gaagtattga cacactttga catatcgctg      2400
     gagagcatag taacatgcga cgcgagcgca cgcgggctgg gggccgtgct ggcacagcgc      2460
     gcgtctgacg gcagcgagcg ggttgtggcg tacgcatcgc gggcgctcac tgccgcggag      2520
     ttacactaca gccagataca taaagaagcc ttggctataa ttttcgcggt agacaagttt      2580
     catcagtatc tttatggcag aaagtttaca ctacgtacag atcataaacc gctggtcaca      2640
     atttttgggc cccatgcagg aataccgaac acggcggcga gtcgtttaca gcggtgggcc      2700
     attaaactat cagcttacga ttttaatata gagtacattc gatcagataa aaacacggca      2760
     gatattttgt ctaggttaat tagcactcat aaagaagggg ttattagtga agaattagac      2820
     acacctgaac aaacgtattt acactttgcc gcggaagcat tgttattaga ttatcaaacg      2880
     ttaaaaaaag aaaccgtttc ggatagtgta ttgagcagag tagccagata tataaacgat      2940
     ggctggccgg tcgaggtcga aatgaaagaa ttaaaaccat attttaaccg tagaaaggaa      3000
     ttatatattg agctagggtg tgtaatgtgg ggacataggc tagtaattcc tagtacgtgt      3060
     aggaataaag tgatcgctga gcttcatgag agtcacatgg gcatagtcaa aactaaatcg      3120
     ttagcgcgaa gttacgtatg gtggccggga atagacgagg cactagagac agcatgttgc      3180
     agctgcaccg tgtgcgctga agtggcggac gcaccacctg cgcatgcgcc ccgcgcctgg      3240
     ccgtggccag atcgaccgtg gaccaggata cacgtagact tcttaggacc ggtagccggt      3300
     cttacttatc tagtggtagt cgatgcacat tcaaagtgga ttgaagctat tagaatgctg      3360
     agcaccacat cgcaagcggt aataaaagaa ttacgagaga tgtgggcgag atttgggtta      3420
     cctaaacaat tggttagtga taatggccct ccgtttttca gtggagaatt tcagcaattc      3480
     ttaaataata atggtataga acatatattt tcggcacctt atcacccagc ttctaatggg      3540
     gcagcggaaa acgctgttaa aatttgtaaa aagagcatta aaaaggcgat taaatcgaaa      3600
     tccgacgtac actccacatt gtgtcgtttt ctgctggcgt acagaaacac accacactat      3660
     acaaccgggg aaagccccgc caagatgtta ttagggcgca acttgcgcat gcggttagat      3720
     tgtttgaaac cagaccagaa ggcacttatt agagctcgcc aagagacagt agaagctaca      3780
     tcgagtggcg tcacaagaca gtttaatccg ggggaccttg tatggttcag agaataccgt      3840
     agctcaaaca agtggtctgc agggactgtt atagagaaaa caggtagtac agattataat      3900
     gttaaatcta tccacggcac tgaggtgcat agacacattg accaactaaa accaagagtg      3960
     ataaatagga cagctaggct agtagatgca aactttagga actttcaacc agttcagcct      4020
     gttaagagct ctcgctcttc tctcgtgttt ccttcggaca ataatcgagc gccgaacaca      4080
     gaaccggacc ggacaaacgg aaccagcttg acgaaagcat tggtcgagga aacatcccgc      4140
     acgcaaacag acggaagtga tttggttaca agtgaaccct tgtcaacgtc aagtgtacct      4200
     ttaaatatgc ccaaggtgca ggagacgggt agtcctaggg ttcctattac tcgggatata      4260
     cgaactagta atcgtacacg caaaccggtt aagagatatg ggtttgatga tgattgaagt      4320
     aagaaaatat attataagat tgttaagatt attattgata tgttgtttaa tataatttag      4380
     taagtaagtt tatctgtaat aattaagggt ggagg                                 4415
//
ID   Gypsy-2_TrNi-LTR repbase;    DNA;    INV; 121 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-121
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 247-247 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 121 BP; 37 A; 15 C; 29 G; 40 T; 0 other;
     tgttacatat gattataaat atttgtgttg tctgtggtta agtgaggagc gacgcgccag        60
     atttggaatg gcggcaattg aaaatagaag cttgaactat gcaaacgtct attatttatc       120
     a                                                                       121
//
ID   Gypsy-2_TrVa-I repbase;    DNA;    INV; 5082 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5082
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 248-248 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..4773
FT                 /product="Gypsy-2_TrVa-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDPNQFKQFLEVMQTNQRTLIKELVNQLKPTAEGETQ
FT                 VIKVSHVPPFESFDPSKEKFNYYKQRFENYLSMKEIQDDKKAQMLLNSIGA
FT                 SNYNILAALVAPKKPSSLGYDELVNELEKHLAPKKNALVSQHYFLSKYQKE
FT                 GENIADFVASLRRDVAECDFNVKCQCDSQVSAADLLLRAQFIRGIKDNSIK
FT                 EQLLQSNLLSFNEIVSKAMALEASKSDCRELSKTQPFASSTSHAQEEINKV
FT                 SFRNHQSRNRSKSNSQSSRSKSFSHNRSNSFNRSNSKSFNSSNSRYNGSRK
FT                 SKIDYEKLGINNMCLRCGKDNHRVSDCYNDASKFKCKACHKVGHVERVCVK
FT                 TLLSKRQSRVSHLSDDESVDECYPTYSINKIIDIYPSNNQGSVKSVSNQIS
FT                 RKDAEKYFINVSIDNVSQCFEVDSGSAHSLLPMQQFKKLNIKKPLNPTKVV
FT                 FRSYTGEVFVPYGTIQVEVKYKETSSIEELFIVPNGLDALFGRIWVRHLNV
FT                 NLNELDQEPIFKPSNTTPEIFTVYTLNDIERRYHDLFVPKVGCVPKFEVKL
FT                 QLREGVKPSYTREREVPYALREKVERELDTLEAAEIITKCETSDWGSPLVA
FT                 IPKTDGSVRLCVDYKVGVNECLVNSNYPIKKIEDVLNSLCNSKYFCTLDLF
FT                 KAYLHLKVDEQSSVIQTISTHRGTYRMNRLSFGIKPAPSEFNRIFEQILRG
FT                 LPKCESYFDDIIIHGRTLGECKQNLNLCLERLRAFDLHLNLPKCKFFQTRI
FT                 EHLGYQIQLNKISKSPSKVKAITEMPRPTDLQGLRRFLGLVTYYSRFLPNF
FT                 SSVTHPLRQLLRKNQKFRWSAACQAAFIKLKQEIASDRVVRPFDPTLPVLV
FT                 ATDASPTGIAAVLSHEVNGVEQPVAFVSRSLTEAEQNYSQIDREALAIVFA
FT                 CDRLYHYLYGRHFSLITDNKALTRIFHRKTALPKMTSARLLRYASFLSGFN
FT                 YSVVFRKGIDNNNVDCLSRAPIKECDSFSADAALNREVHQICVSTLNEIST
FT                 ISLTSTSIAAETGKDPDLAKLCKEVLRSETESEYLIDHGILFRAHRVVIPK
FT                 SLQPAVLQELHSTHVGITKMKQLARRYCYWKNIDKDIEHLVKSCPECASVK
FT                 HQPNKAPLHHWDPPENNWDRIHIDYAGPLDNRHFLIILDAKSRWAEIKILQ
FT                 NEAPTSSNTIKLLDQVFSFHGYPSVMVSDNAKIFSSDYFTEYCKSNGIVQK
FT                 FTAPNHPATNGLAERNVQTLKRRLKTMSNEKLSIHEKVQKILFRYRATPLV
FT                 DGKTPAENYLNRKIKIKLDAMRPHQEAKSPQKLKPKTRVLQVGDSIQARFL
FT                 VNNRFIWKFGQIIRKLGLLHYIVKLDEGREVKRHINQLLKTSVNRKQVTFD
FT                 KSTHQKPIDTVEESKPASNQSFLFDPLCSRVLRPIIKKPSTSYKPPAFQKP
FT                 CIIQQQPSTSGQPHVRKKPPLVDLRSPMKKNLSMSAASSSSSSTRPQREKK
FT                 TPRYLGEYDLTDL"
XX
SQ   Sequence 5082 BP; 1649 A; 1043 C; 904 G; 1486 T; 0 other;
     aattggcgac gaggtaaaac gtttcggcga gaataattcg gtcgcggacg tgactcgcga        60
     aaattcggtt cgtgtcgtgc aatcgtccaa catgccggcg tggtaaattg tcgatcaagt       120
     tctttcaatc tagtcaaatc aaccatcaat tcgtgatcaa tcatcgttaa gtgcctacca       180
     tgatcaacct acgtaagttt cgttatcaaa attcggtttc gtgcgcgcac cgtaagtaac       240
     cgtgtacccg tatcaacctg ttaaatccaa agttccatgc gaagatctcc atcaacttat       300
     caaatctaac actatcaaat caatcaaatc ctccacatca tggatcctaa tcaattcaaa       360
     cagttcttgg aagtcatgca aaccaaccag cgaactctca tcaaggaatt ggtaaatcaa       420
     ctaaaaccaa ctgcggaagg tgaaactcag gttatcaaag tatctcatgt tcctcctttt       480
     gaaagttttg acccatccaa agagaaattt aattattaca aacaaagatt tgaaaattac       540
     ttgtcgatga aagaaattca agatgacaaa aaagcgcaaa tgcttttaaa ttccatcggc       600
     gcatcaaatt acaacattct agctgcatta gtcgctccta aaaaaccgag tagcttaggt       660
     tatgatgagc ttgtgaacga gttagaaaaa catcttgctc ccaagaaaaa tgcattagtt       720
     tctcagcatt acttcctctc caagtatcaa aaagagggtg aaaatattgc tgattttgtg       780
     gcgtcgttac gcagagatgt tgcggagtgc gacttcaatg taaaatgtca gtgtgattcg       840
     caggtctcag ctgctgatct cttactcaga gcccaattta tcagaggtat caaagataat       900
     tcaatcaaag aacagctcct acaatcaaat cttcttagtt ttaatgagat agtctcaaaa       960
     gcaatggctt tggaggcatc aaaatctgac tgccgcgagc tttctaaaac tcaacctttt      1020
     gccagctcta cttcacatgc tcaagaagaa attaacaaag tctcttttcg taatcatcaa      1080
     agtagaaatc gatccaaatc caattcgcaa tctagtagat caaaatcctt ttctcacaat      1140
     cgatcaaatt cttttaatcg ctccaactca aaatccttca atagctcaaa ttcaagatat      1200
     aatggtagtc gtaaatcaaa aattgactat gagaagttag gtattaataa catgtgcctt      1260
     agatgtggta aagataacca ccgtgtatct gactgttata atgacgcatc taaattcaaa      1320
     tgtaaagcat gtcataaagt tggtcatgta gaaagagttt gcgtaaaaac tcttttatcg      1380
     aagcgacaat ctagagtttc tcacttgtcc gatgatgaat ccgtagacga gtgctatcct      1440
     acttacagca ttaataaaat cattgatatt tatccatcca acaatcaagg cagcgtgaag      1500
     agcgtctcta atcaaatttc tcgaaaagat gcagaaaagt attttattaa tgtttctatc      1560
     gacaatgttt cacagtgctt cgaagttgac tctggttcag ctcactctct attgcctatg      1620
     caacaattca agaagttgaa tatcaagaag ccgttgaatc caactaaggt agtcttccga      1680
     tcctacacgg gagaagtttt tgtgccttat ggaacaatcc aagtagaagt gaaatacaag      1740
     gaaaccagct ccatcgaaga attgtttatc gtgccaaatg gacttgatgc cctcttcgga      1800
     cgaatttggg taagacattt gaacgttaat ttgaatgaat tagatcaaga accaattttt      1860
     aagccatcaa atactactcc agaaattttt actgtctaca ccctcaacga catcgaaaga      1920
     agatatcatg atttgtttgt cccaaaagtg ggatgtgttc caaaatttga agtcaaactg      1980
     cagctcagag aaggagtgaa accatcgtat acccgagaac gagaagttcc gtatgcccta      2040
     cgtgaaaaag ttgagagaga attagacact ttagaggctg ctgagataat tactaaatgt      2100
     gaaaccagtg attggggttc gcctcttgtt gccatcccaa aaactgatgg ttcagttcga      2160
     ttatgcgttg actacaaggt cggcgtcaat gagtgcttag taaactctaa ttatccaatc      2220
     aaaaaaatcg aagatgtttt gaacagctta tgcaactcca aatatttttg taccctggat      2280
     ttgtttaaag cgtaccttca tctgaaagtt gatgaacaga gtagcgtcat ccaaactatt      2340
     tcgactcatc gtggcactta caggatgaat agacttagtt tcggtatcaa gccagcacca      2400
     tcggaattta acagaatttt tgaacaaatt ctacgtggtc taccaaaatg tgaatcttat      2460
     tttgacgaca tcattattca tggcagaact ttaggagaat gcaagcaaaa cttaaatctc      2520
     tgtttagagc gtttgcgagc ttttgatctt catttgaatc taccgaagtg taaatttttc      2580
     caaaccagaa tagaacatct aggttatcaa attcaactta ataaaatttc aaaatctcca      2640
     tcaaaagtga aggctattac tgaaatgcct cgccctacag atctgcaagg attacgtcgt      2700
     tttcttggtc ttgtcactta ttactctcgt tttttaccaa atttttcaag tgttactcat      2760
     ccgttacgac agttgttaag gaaaaatcaa aagttccgtt ggtctgccgc ctgccaagct      2820
     gcgtttatca aattaaaaca agagatagcc agtgatcgag ttgtccgtcc atttgatcca      2880
     accctgccag ttttggttgc aacagatgcc agtcccacag gtattgcggc tgtgctatca      2940
     cacgaagtca atggagttga gcaacctgtt gcatttgtat ccagatcatt aacagaagcg      3000
     gagcagaatt actcacaaat cgatcgagag gctttagcta tcgtttttgc ttgtgaccga      3060
     ttatatcatt atctgtatgg tcgtcacttc agtttaatta ctgacaacaa agctctcacc      3120
     aggatttttc accggaaaac tgcgctacct aagatgacat cggcccgtct ccttcgttat      3180
     gcttcatttt tatctggatt caattactct gttgtgttcc ggaaagggat cgataataat      3240
     aatgtggatt gtttgtcacg tgcacccatc aaagaatgtg attcgttttc tgcggacgct      3300
     gcactcaata gagaagttca tcaaatttgc gtatcaacgt taaacgaaat ttcaacgata      3360
     tccctaactt caacatccat tgctgcagaa actggaaaag acccagattt agcaaaattg      3420
     tgcaaagaag tgctgaggtc agaaacggaa tccgagtact taatcgacca tggaatctta      3480
     tttcgagctc atcgagttgt cattcctaaa agtttgcagc ctgctgtttt acaagagcta      3540
     cattctacac atgtcggcat caccaaaatg aagcaattgg ctcgtcgata ttgttattgg      3600
     aaaaatatcg ataaagacat tgaacaccta gtcaaatcgt gtcctgaatg tgcttcagta      3660
     aaacaccaac caaataaagc tccacttcac cactgggatc ctccagaaaa taactgggat      3720
     cggattcata tcgactatgc aggtccatta gataatcgtc attttctaat tattcttgat      3780
     gctaaatcgc gttgggctga aatcaaaatc ttacaaaacg aagcccctac ttcaagcaac      3840
     actatcaaat tacttgacca agtcttttct tttcatggtt atccttctgt tatggtatct      3900
     gataacgcaa aaatcttttc tagtgattat tttacagagt attgtaaatc gaacggcatc      3960
     gttcagaaat ttactgcgcc caatcatcca gcaacaaatg ggttggcgga aaggaacgta      4020
     caaactctga aacgccgttt gaaaaccatg tcaaatgaaa agttatcaat tcatgaaaaa      4080
     gtacagaaaa ttctttttcg ttatcgagct acaccgttgg tcgatggaaa aacacctgct      4140
     gaaaactatc tcaatcgtaa gataaaaatt aagcttgatg ccatgcgacc acatcaagaa      4200
     gccaagtcac ctcagaaatt gaaacccaaa acaagagttt tgcaagttgg cgatagtatc      4260
     caagctcggt tcctagttaa taaccgtttc atctggaaat ttggtcaaat aatccggaag      4320
     ctaggattac ttcattacat cgtaaaacta gacgaaggta gagaagtgaa gcgacacatc      4380
     aaccaactct taaaaacaag tgtcaaccgg aagcaagtta ctttcgataa atcaacacat      4440
     cagaagccaa ttgacaccgt tgaagaatca aaaccggcat caaatcaatc ttttcttttt      4500
     gatccgcttt gctctcgagt tctccgtcca atcatcaaga aaccgtctac cagctacaaa      4560
     cctcctgctt tccaaaaacc gtgtatcatc cagcaacaac cttctaccag tggtcaacct      4620
     catgtcagga agaaacctcc cctcgttgat ctcagaagtc caatgaaaaa gaacttaagt      4680
     atgagtgctg catcttcttc ttcatcatca acccgtcctc aaagggagaa aaagacaccg      4740
     agatatttag gggaatatga tttgactgat ttgtaggtaa atgaaatgta tataaatctt      4800
     taaatcattt tgaagataaa cttttaattt gttatcaatt ccgtccctcc gggactcaaa      4860
     gttcctatta ttttcttatt cttattcttt attgtaaata tgacgtaaga gatttaaacc      4920
     taatttttct ttaaaaaaaa agactgaggg taactgtatc ctaaattaat cctcccaaat      4980
     taattattga tttgtcttat ctgtgataaa agtaccagta cctgagaaga aaatttttta      5040
     tttgttttat cgttgtttct caaaataagg gggggggaga ac                         5082
//
ID   Gypsy-2_TrVa-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-2_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-223
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 231-231 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 223 BP; 62 A; 50 C; 28 G; 83 T; 0 other;
     tgttgtatct atagtcagcg atgtcagcat catcgatgca catcggttgt tattaacctc        60
     actctttgct tttcattcaa tcccgatcag gctcccagtc gcataagtca tacgtataag       120
     ttcaacatgt tttatcatca atatataatt gtcctatcct gtatccatcg agtataatta       180
     tttatcctta ttaatattct acatccttca tcaagatgta aca                         223
//
ID   Gypsy-30-I_NVi repbase;    DNA;    INV; 11685 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-30-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-11685
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 996-996 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           857..3286
FT                 /product="Gypsy-30-I_NVi_1p"
FT                 /translation="MSSSDESEKTTINREANITKTRGNRTLDLDDSLLNPD
FT                 LQIINQYSDSQKRNDPIDSALERKASQSYKRLEKSLSKYHVEAPFAKPKAR
FT                 KSIHDRVQSFNKNLFSAYRENKVTDDEEDSIIKQVNTSVPVKQVPIKPIRL
FT                 RESLLKPSSLNQENFKISAVAQANASLEATPPFSNPTLEQRDPTRTEPSDA
FT                 AHELKLAESEKNLSTELLTNSNLSESLNLENIQNLSSSSINSTVENATIIN
FT                 TTETNTQSQEKVKSDVIPENLTKFEVIQANKQIELLSRQSLAESAEEVARE
FT                 AEELRNKFANHLKIQLSPCVKKEVLDDYFQSPENVDELGEKLRKGEKFSSV
FT                 YDYVCRRISNFWGITAFKDSPNNTRDYTENNEQFSTPTGNIINPLQIIAPK
FT                 TRLKFDETINEENSESEIESNKKKMAPQIKGISLKDTLDLIPRFNGSNISV
FT                 TQFVDGCTEARDILPEGNEEDCARLIRMRLFGDALACARGQKFKTIDEIIQ
FT                 FFESNFGSSKTYHEVSGELAKIKQRPTESVVVYSNRLREIEKEIKKAAVRE
FT                 GRATDKNNFNEELEKDCIRFFIRGLRWEIQTRMGDMQTLEKAHKKAIEIER
FT                 DFAYTEENDENLRREEARLKPKETRRVNVVEATPEITCSFCNQVGHAAMNC
FT                 LKFCLQFLSNNRPSQSNGNPNNSRFSSFNGNNNRNNNQQSYNRNNNWNGFE
FT                 RNFRYNNQQNNYHPNNEAISNNNIRDNNNQNLNNSTSNLPTNFFCHYCLKP
FT                 GHYKRNCYTLMRDMQEGNLPTGNGRGNPRAGGEAAASXARPIXETQGASTS
FT                 STRQQST*"
FT   CDS           9690..10286
FT                 /product="Gypsy-30-I_NVi_3p"
FT                 /translation="MAICDTSARDQALMRTLLSISMNNSSGPKHPEYIAYK
FT                 DRLYTFILWLEGSSQKPEILAEMGLCYNYYENQVYCFYCDCKMSQLQHGED
FT                 LWIRHAILAPDCNYLRTRKGEEFIEKVYTRVNFNREPPPESLHCHDQDSNS
FT                 DKSDIVVMKPLDCKICFRKEVKILFLPCSHLIACAECAIKLEECYICKQTI
FT                 EHMIHVNS*"
FT   CDS           join(3127..6087,6044..6421,6393..7973,8004..8666)
FT                 /product="Gypsy-30-I_NVi_2p"
FT                 /translation="LLYIDEGYARRKLADGKRSRQSSRGRRGCRFECSPDX
FT                 RDSGSEYILYETTVNLNQKNCAPNVEIDIKELTRPAIFMLDTGSSPNLLKI
FT                 SHVPIYLPINSQEIILLRGITSASIKTLGTITVNYDGLNIYFHIVGDEFPI
FT                 REAGILGSDFFQQTSAKICYERNCLELANIEYPFINDIQNFQNDEYNDERW
FT                 NLKNNASKRVVSERLSKGDSTIDFRRERAKSLENILFDNATLNLTTENQAI
FT                 FENYLSTSSFVQEDEATAPQGGEIVNCAYVQEVPSASAKTLPSLESRRENI
FT                 VEESLLERETDYFDDFEKFNDDLFVNSLGVNETKGIMDNIEMIQSDKYDAE
FT                 KVYVCQNKNDDAYPTERLTDKIIGKIRRFEDLYEYTPDCQESSARELSANE
FT                 NYEDFNTSDYYENDEQYKNKNLEFSAPISLCHRGQAQIAKDDYENYENEMI
FT                 KSCKRIEQDTEIEENCLNEDVECVYFCAQQADDENCVKLKSKIKEMEDCDP
FT                 REYNEQIQEEKQPYSDEHGALTSQISLRESASKREDFERKIRDEAHEKFEP
FT                 MYASQIAEISPTGRPPDEESARATVNVPREVTLKKNVRFRDENLEQYYDFK
FT                 SNLQNSENNSNNIIRGISNDDEVSKINIRKKRVISKGAIPKSIKLRKKIKK
FT                 MLPSDNNYEDFTDIFSKTRPSKFHNSIKKDENPEVFKFNAISEALENIITT
FT                 ERKENKNQNYSISLEKDNSQETEKYLHECGRIEELLNDCQNPYGKQEHEVH
FT                 GLCVISSTPAYENAEGAYCSVMLIDSAAAEVLRCEKVRALLRLDHLKPRER
FT                 EAIEQIVDTYHEQFHLPGEKLTTTHIIQHRIPTIDNRPVNVKTYLPPRAHR
FT                 GPINEKIKEFLDGGLISPSNSDYNSPLWCLRKKDDSHGNPRYRIVLDYRKL
FT                 NEVTITDNYPLPNIQDIFDQLGGSTYFTVLDLASGYYQIPLHPEDRHKTAF
FT                 TVMNSGFYEWNVCPQGLTSMPATFMRCINRIIHLCLRHLCDALIELYNNTP
FT                 MKEGEKPESALTVSPEDAKELDSGPLDVCVYLDDIIIYAKTVEEHNEKFAK
FT                 LLKRLKAANFKLSPDKCDFLRTEVSFLGHLISNQGICPDPKKVEAVRKKIS
FT                 ATENCERKFPRPKTVKNIRQFLGLAGYYRRFIDGFSKIAKPLSNLLKQNVP
FT                 FEWNEKAQEAFDILREKLCKEPVLIFPDFSKPFILTTDASLTCIGAVLSQG
FT                 TIGQDRPIAYASRVLNDAETRYDTYSREALAMVFGIRHFRHYLLGTKFVVC
FT                 TDHLPLCWWKDSRDPDSRATRWRLKLSDYNFEVVYKPGRINLNADALSRNP
FT                 IEENTESVMLIRESTESHAETRVENGDQSPLESAATEVATGRMTRTRAGKL
FT                 SRPDYRENRKKLPNANKGTKELRGKERSEENDSVSANKTVEKHVEIRTNKK
FT                 SYKLPVSNQSTSETINLDDIGTHNVSDQDQETMINHEDNDSVINPNTQKRS
FT                 KSYGKMFAETREQLSMRKDNYLYFLSSMHQPCDEGARLLESRKEVPRLHEL
FT                 TAGELRIMPKSNKRHFIIILRGLERESISKITENLVSGLKQLKSFILKEQI
FT                 KSISLAKSVSIENVRWDDVIDKIRSTLRGSQVKIIICKGTITYPSLSERAK
FT                 IIEESHCSAIGGHKGVNKTISAKSTYKCIFGSVYLVNKLVFMKRLAKRFRI
FT                 TQFKTTAIHPQSNGSLERSHHVLSEYLKQFISQDEQWDQWLEMAAFSYNTS
FT                 VHEATQHTPYELVFGRLARSPSSDPLETEDRLPTYADYIIELTTRLNNIQE
FT                 IAREKLIAAKWRAKYYYDRSANPQDFKVGDYIWLLKGGKIHKLKDQYEGPY
FT                 LVVDILRNGNIKIQLKTNKYKVVHMNRVRISYIEPEKT*"
XX
SQ   Sequence 11685 BP; 4477 A; 2018 C; 2193 G; 2993 T; 4 other;
     ggttgtttac ttataatttt ttggtgcatc gcaggccggg aaatattttg aaacgcaaaa        60
     aattcagaca tttttgagta attattaaac aaaaactcgt gaaagtggaa attaaaatcg       120
     tgtagaaact aagaaagtga tcatttaaca caatatttta ttttgcgcaa gccttttcct       180
     attcctccgc aagcaaagaa tcgctgagta gcgacttgct ttcgttttca caattcctct       240
     gcaagtaaat aatcactgag tagcgacttg ttttcgtttt cacaattcct ccgcaagcaa       300
     agaattgctg agtagcgact ttctttcatt tctacaatcc tttcgcaagc aaagaatcgc       360
     tgagcagcga cttgctttcg ttctcacaat ccttccgcga gtaaagaatc gctgagtagc       420
     gacttactcg ttatcaacaa tccttcttaa aacagagaat cgcctctttg tgcgacctgt       480
     tcgtcagtcc ctaactccgt gatcgattaa taaccttatt ttccttacta gtacgcaaaa       540
     taaaataaat gaatactaca aataatccga ccgaaattcc gcgaaaaaat agaagggctg       600
     gcagaaaagt aagagcaaca attaagaccg aaagcaccga agaatcgggg gaaatagtta       660
     attctttagc cgaaaatcat caaattaccg agaaaacaag cgaatcgaaa ccgaaaagtg       720
     acgtaaaatt atcagaattt caaatcgaga taggaaaaaa gttcgacgcg ctattcgcat       780
     tcgctgaaaa agaaattaaa ttaaacaagt taaaagcaca aaaattaaaa aatgaaagtt       840
     gtaataaaaa ttaattatgt cgagtagtga cgagagcgaa aaaaccacaa taaatcggga       900
     agcgaatata acaaaaactc gtggaaatcg aacacttgat ttagacgaca gtcttttaaa       960
     cccagatttg caaataataa atcaatattc ggattcgcaa aagagaaatg atcccataga      1020
     ttcagcgtta gaaagaaaag caagccaaag ttataaaaga ttagaaaaga gtttatcgaa      1080
     gtatcacgta gaagcccctt ttgctaaacc aaaagctaga aagtcaattc acgatagagt      1140
     tcagagtttc aacaaaaatt tatttagcgc ttatagagaa aataaagtta cggacgacga      1200
     agaagacagt attattaaac aagttaacac cagcgttcca gttaagcaag tacctataaa      1260
     accgattcga ttaagagaat cattattaaa accgagtagc ctaaatcaag aaaattttaa      1320
     aatttccgca gtggcccaag cgaacgcatc tctagaagcc acgccccctt tctcaaaccc      1380
     cactctcgag cagcgagatc ctactcgtac agagccgagc gacgccgctc acgaattaaa      1440
     attagccgaa tcagagaaaa atctatcgac cgaattgcta actaactcga atttgtctga      1500
     atcccttaac ttagagaata tacagaattt atccagctcc tcgataaact caaccgtcga      1560
     aaacgcgact attattaata cgacagaaac taatacccaa tcgcaagaaa aagtaaaaag      1620
     tgatgtaatt cccgaaaatt taacgaaatt tgaagtaata caagcgaaca aacaaataga      1680
     gttactatcg agacagtccc tggcagaatc ggcagaagaa gtcgcgcgag aagcagaaga      1740
     attacgcaat aaattcgcga atcacttgaa aattcaattg agtccctgtg tgaaaaagga      1800
     agttttagac gactattttc aaagtccgga gaacgttgac gaattaggtg aaaaacttag      1860
     aaagggagaa aaattttcta gcgtatacga ctacgtctgc cgacggatct cgaatttttg      1920
     gggaatcact gcatttaaag atagtcctaa caacactcgc gactacacgg agaataacga      1980
     acagttctct acgccaactg gaaatataat aaatccttta caaataattg ctccgaagac      2040
     gcgtctaaaa tttgacgaaa ctataaacga agaaaatagt gaaagtgaaa ttgagagtaa      2100
     taagaaaaaa atggcgccac aaataaaagg gatatctttg aaggacacgc ttgatttaat      2160
     tccccgtttc aatggatcga acatatcagt aacacagttt gtcgacggtt gtactgaagc      2220
     gcgagatatt ctacccgaag gaaacgaaga agactgtgcg cgtcttattc gaatgcgtct      2280
     ttttggcgat gcattagcgt gcgcaagggg acaaaaattc aaaactattg atgagatcat      2340
     tcaattcttt gagagtaatt tcggatcatc aaagacgtac cacgaagttt cgggagaact      2400
     agctaaaatc aaacagcgtc cgacggaaag tgtagtcgtt tactcgaatc gccttcgaga      2460
     aatcgaaaaa gaaatcaaga aagccgcggt gcgcgaaggg agagcaacgg ataaaaataa      2520
     ttttaacgag gaattagaaa aagattgtat tagatttttt attcgaggac ttagatggga      2580
     aatacaaact agaatgggtg atatgcaaac actagaaaaa gcccataaga aggcgataga      2640
     aatcgagagg gatttcgcgt atacagaaga aaatgatgaa aatttaaggc gagaagaagc      2700
     gcgattaaaa ccaaaagaga ctcgtagagt aaatgttgta gaagctactc cggagataac      2760
     gtgcagcttt tgtaaccaag ttggacacgc cgcgatgaat tgtttgaaat tctgtttaca      2820
     atttttaagt aataaccgtc cctctcagtc aaatgggaat ccaaataata gtcgtttttc      2880
     atcatttaat ggaaataata atcgaaataa taaccaacaa tcgtataatc gtaataataa      2940
     ctggaatgga ttcgaaagaa atttccggta taataatcag caaaataatt atcatccaaa      3000
     taacgaagcg atttcgaaca ataatataag agataacaat aatcaaaatc ttaataattc      3060
     cacttcaaat ttgccaacga actttttctg tcattactgt ctaaaaccgg ggcattataa      3120
     gcgtaattgt tatacattga tgagggatat gcaagaagga aacttgccga cgggaaacgg      3180
     tcgcggcaat cctcgcgcgg gcggagaggc tgccgcttcg artgctcgcc cgatcmcaga      3240
     gactcaggga gcgagtacat cctctacgag acaacagtca acttaaacca aaagaactgt      3300
     gcgcccaacg tcgagattga tattaaagag ttgacacgtc ctgcaatttt tatgttagac      3360
     accgggtctt cgccaaatct attaaaaatt tcacatgtcc cgatttattt accaataaac      3420
     tcgcaagaaa taattttgtt aagaggaata acttcagcat caataaaaac cctagggact      3480
     ataacagtta attatgacgg tttaaacatt tattttcaca tagtcggtga cgaatttccg      3540
     attagagaag caggaatatt gggcagcgat ttctttcaac aaacaagtgc aaaaatttgt      3600
     tatgagagaa attgtcttga actagcaaat atagaatatc cgtttattaa cgatatacag      3660
     aattttcaaa atgatgaata taatgatgag cgatggaatt tgaagaataa tgcaagcaag      3720
     agagtcgtat cggagaggct ctctaaggga gatagtacaa tcgattttcg aagagaacgt      3780
     gccaagtctc tagaaaatat tctttttgat aatgcaactc tcaatttaac aacagaaaat      3840
     caagccattt tcgaaaatta tctgagtacg agtagttttg tgcaagagga cgaagcaacc      3900
     gctccacagg gaggcgagat cgtgaactgc gcatatgtac aagaggtgcc gtcggcgagc      3960
     gctaagactc taccgagcct agagagccgg agagagaata tagttgagga gtctctattg      4020
     gaaagagaga ctgattattt tgatgatttc gagaaattta atgatgacct ttttgtaaat      4080
     tccctaggag tgaatgagac aaaaggtata atggataata tagaaatgat tcaaagcgat      4140
     aaatatgacg ccgaaaaagt gtatgtgtgc cagaataaaa acgatgacgc ttatccgacg      4200
     gagagattaa cagataaaat tataggaaaa atcagaagat ttgaggattt atatgaatat      4260
     acgcccgact gccaggagag cagcgcacgc gagttaagtg ctaatgagaa ttatgaagat      4320
     tttaatacaa gtgattatta tgaaaatgat gaacaatata aaaataaaaa tttggaattt      4380
     agtgcgccaa tatctctatg ccacagaggt caagcacaga ttgccaaaga tgattatgaa      4440
     aattatgaaa atgaaatgat aaaaagttgt aaacgaattg aacaagatac agaaattgaa      4500
     gaaaattgtt taaatgaaga tgttgaatgt gtatattttt gtgctcaaca agcagatgat      4560
     gaaaattgtg taaagttgaa gagtaaaatt aaagaaatgg aagattgtga tccgagagaa      4620
     tataatgaac aaattcaaga agaaaaacag ccctacagcg atgagcatgg agccttgacg      4680
     agtcaaataa gtctaagaga aagcgcgagt aaaagagaag atttcgagag aaaaattcgg      4740
     gacgaagcac acgagaaatt cgaaccgatg tacgcctccc aaatagccga gataagccca      4800
     acaggacgtc caccggacga ggaaagtgca agggccactg taaacgttcc cagagaagtc      4860
     acacttaaga aaaatgtgcg ttttcgagat gaaaatctag agcaatatta cgatttcaaa      4920
     tccaatttac agaattctga aaataatagt aacaatataa tcagaggaat aagtaatgac      4980
     gatgaagttt caaaaataaa tattcgtaaa aagcgtgtaa ttagtaaagg tgcgattccg      5040
     aaatctataa aattgagaaa gaaaattaaa aaaatgttac catcagataa caattacgag      5100
     gatttcacag atattttctc gaagactcga ccgagtaaat ttcacaattc aatcaaaaag      5160
     gacgaaaatc ccgaagtgtt taagttcaat gcaataagcg aggcgttaga aaatataatt      5220
     acaactgaaa ggaaggaaaa taagaatcaa aattattcca tatcacttga aaaagataat      5280
     tcgcaagaaa cagagaaata tttacatgag tgtgggagaa tcgaggaatt gttaaatgac      5340
     tgtcagaatc cctatggaaa acaagaacac gaagtgcatg gactttgcgt aatatccagc      5400
     acgccagcct acgaaaatgc agaaggagcc tactgtagtg ttatgctyat agactctgca      5460
     gcggccgaag tcctccgctg tgaaaaggtc agggctctat tgcgcctcga tcaccttaaa      5520
     ccaagagagc gagaagccat tgagcaaatt gttgacactt atcacgaaca atttcattta      5580
     cccggggaaa aacttactac tacgcacata atccagcatc gcattccgac tatagataat      5640
     cgacccgtaa atgtcaaaac gtacctccct cctagagcac acaggggtcc aatcaatgaa      5700
     aaaattaaag aatttttgga cggcggactt atttcaccgt cgaattctga ttataatagt      5760
     ccgctttggt gtttaagaaa aaaagacgat agtcatggta atccaagata cagaatagtt      5820
     ttagattatc gaaaattgaa cgaagttact ataactgaca actatcctct tccgaacatt      5880
     caagatattt tcgatcaact cggwggttcg acatatttca cggttctaga tctcgcgtcg      5940
     ggctattatc aaatcccatt acacccggaa gatcgacata agactgcatt tactgtaatg      6000
     aattctggat tttatgagtg gaatgtttgt ccacaaggtt tgacatctat gcctgcgaca      6060
     tttatgcgat gcattaatag aattatataa taacacacct atgaaagaag gagagaagcc      6120
     tgaaagtgct ctcactgtct cgcccgaaga cgcgaaagag ttagattctg gaccattaga      6180
     cgtttgcgtg tacctcgacg acatcattat ttacgcaaaa accgtagaag agcataacga      6240
     aaaattcgcg aaattattaa aaagattaaa agccgccaat tttaaattat cgcctgataa      6300
     atgtgatttc ctccgcacag aagtaagttt cttaggacat ttgataagca atcaaggaat      6360
     ctgccccgat cctaagaaag tagaagccgt aagaaagaaa atttccgcga ccgaaaactg      6420
     ttaaaaacat acgccaattt ttgggactag ctggttatta tcgaagattt atagacggat      6480
     tttcaaaaat agctaaacca ttaagtaatc tactcaaaca aaacgtaccc tttgaatgga      6540
     acgagaaagc acaagaagct ttcgatatac tgcgagagaa attatgtaaa gaacctgtac      6600
     taatttttcc cgacttctca aaacccttta tactcaccac cgacgctagt ctgacttgca      6660
     tcggagcagt gctttctcaa ggtacaatag gccaagatcg cccaattgca tatgcttctc      6720
     gggtgttgaa tgacgcagaa actcgttacg atacgtattc gagagaagcc ttggctatgg      6780
     tttttggcat tcgccatttc agacactatt tattaggcac gaaattcgtc gtttgcacag      6840
     atcatttgcc actatgttgg tggaaagact ctcgagatcc cgattcacgt gcaacacgat      6900
     ggaggcttaa attgtcggat tataattttg aagtcgtcta caaaccaggc cgaatcaatc      6960
     ttaatgctga cgcactctct cgaaatccaa tcgaagagaa tacggaatca gtaatgctta      7020
     ttcgcgaaag cacagaaagt catgcagaaa ctcgagtcga aaacggggac caatcacccc      7080
     tagagtcagc agccacggaa gttgcaacag gacgaatgac gcgtacgcgc gcaggtaaat      7140
     taagtcggcc tgattacaga gaaaaccgaa agaaacttcc caatgcaaat aaggggacta      7200
     aggaacttag ggggaaggag agatcagaag aaaatgatag cgtatctgct aataagactg      7260
     ttgagaaaca cgtcgagatc cgaacgaaca aaaaatctta taaattacct gtcagcaatc      7320
     aaagtacgtc agaaacaatt aatctcgacg atattggcac acataatgtc agtgatcaag      7380
     atcaagaaac tatgattaat catgaagaca acgattctgt tataaatccg aatacacaaa      7440
     agcgttctaa aagttatggc aaaatgtttg ctgagacccg agagcagctg tcgatgcgca      7500
     aggataatta tttatatttt ttatcctcta tgcatcagcc ctgcgatgaa ggagcacgac      7560
     ttctagagag tcgtaaggaa gtaccgcgat tacacgaatt gactgcggga gagttaagga      7620
     taatgccgaa aagcaacaaa cgacacttta tcataatatt acggggactt gaacgcgaaa      7680
     gtatctcgaa aattacagaa aatttagttt ccggtttaaa gcaattaaaa tcatttatct      7740
     tgaaagaaca aatcaaatca attagtcttg caaaaagtgt ctcgattgaa aatgtacgat      7800
     gggacgatgt gattgataaa attcgaagca cactaagggg atcgcaagtt aaaataataa      7860
     tttgtaaagg tactattact tatccgagtt taagcgagcg cgcaaagatt atagaggagt      7920
     ctcattgttc tgctatcggc ggacataagg gcgtgaataa aactataagc gcgtaaagca      7980
     aaatttttat tgggaaaata tgaaaatcga catacaaatg tatattcgga agtgtttacc      8040
     ttgtaaataa attagttttt atgaaacgat tagcaaaaag attcagaatc acacagttca      8100
     aaacgacagc cattcatcca caatcgaacg gctctcttga gagaagtcac catgtactga      8160
     gcgaatattt gaaacaattt atctcgcaag acgaacaatg ggaccagtgg ctagagatgg      8220
     ctgctttttc gtataatacg tccgtacacg aagcgacaca acacacgccc tacgagttag      8280
     ttttcggaag attggctcgc tcaccgtcga gcgacccact cgaaacagag gacagacttc      8340
     cgacgtatgc cgattatatt atcgaattaa caacaaggtt gaataacatt caagaaattg      8400
     cgcgagaaaa actaatagca gccaagtggc gtgcaaaata ttattatgac agaagtgcga      8460
     atccgcaaga ttttaaggtt ggcgattata tttggttact taaaggagga aaaattcata      8520
     agctaaaaga ccagtacgaa ggtccctatt tagtcgtaga tatactgcgt aatggtaata      8580
     ttaagataca actaaaaact aataagtata aagtagtgca tatgaatcgc gtacgtatat      8640
     catacattga accagaaaag acttaagtct aaattaatta gatgatacat gtcaaaaata      8700
     gtttaagtat aaagtacata atgcataatt acagtattag cgttaatcga ttaaacaagt      8760
     gagataaaaa ttaaaaaaaa agtagtagaa aaataattgt tgaaatctac atttaaagaa      8820
     actaagctta agaaaaaaat ataatcaaaa gataaactcg cctcaagata cactgtgatc      8880
     tgtaagagtg taccaagaaa ctcggtagca ccttcgtagc aatactagac atgaacgcta      8940
     gcgccctgat ggcgattata tagagatatg cgcttgcgcc ccgatggcaa tgatatgtac      9000
     atcatacata tgtcgattat aggcataggc aagcgagaat cagtattaag caaaatcttg      9060
     tctatacaac gaaaatcgtg tgatataact actgtaattc gagaaaatct aaaaattcta      9120
     cctcacagaa aaaaagaaaa aaattcaaat aattctcaaa tatgcgggaa aatctttgtt      9180
     gggtttcaca tatatttata tactactatt ttgaatgata agcagagcca ttttagtaat      9240
     ttcattacaa ttaaaataac aataatcatg acatcaattc tttcattgta caattaaact      9300
     tattctttct tttcttttac ttcttcacca caaattaaca acgatcattt taaattatcg      9360
     ccatgcaaaa aattaacaag gatcatcaaa aaatttaatt tgatacaaaa attaatgaga      9420
     aaatacaaat atatgctcaa ctttcactca caaaactcac aaagatatca cttttacacg      9480
     gacacaagaa caattatcac tgagttaaga agaatcacgt agttaaccat ttcaacactc      9540
     gtaaaacatt aatacaagat tttacacgac tcaaagaaca caaaagagga gcaattctgt      9600
     tttattgttt tagattccgc ctaagccgaa gaatcgaatt ctgggacaag ttagcgttgg      9660
     gttaaactca gaatttcgct gaattgaaaa tggctatttg tgataccagt gcaagggatc      9720
     aagctctaat gagaacctta ctgagcatat ccatgaacaa ctcgtcaggt cctaagcatc      9780
     ctgaatacat agcttataaa gacagactat acactttcat attatggtta gaaggatcaa      9840
     gccagaagcc agaaatctta gcagagatgg gcctctgtta taattattac gaaaatcaag      9900
     tctattgttt ttactgcgat tgcaaaatgt ctcaacttca acacggagag gatctatgga      9960
     ttagacacgc catccttgca ccagactgta attatctaag aacccggaaa ggagaagaat     10020
     tcatagaaaa agtatataca agagtaaact ttaatagaga accaccacca gagagtctac     10080
     attgccatga tcaagattct aattcggata aatcagatat tgtagtaatg aaaccactgg     10140
     attgtaaaat atgtttcaga aaggaagtca agatcctttt tcttccttgt tctcacttaa     10200
     ttgcttgcgc agagtgtgcc attaaattag aagaatgtta catatgtaaa caaacaatcg     10260
     aacatatgat tcatgtaaac tcttaaagag gaaacaactt gacgattcca tcgaacgtat     10320
     aagaagagga aaaaaaacat aaaattatat ctaacccgac cactcagaag aattaagaac     10380
     cattatatga cgatttcaac gaaatttaga taaaatatta tccgaacaat tactgcaaga     10440
     agagataaaa taaatgaata tatagaagta cgattaaaag tagatgataa tattattgat     10500
     ataagaagaa atagtcatcg cgtgcagaac tatcgtataa ttaggtataa aaagaagaga     10560
     aaaaaaaaat aattataaaa agtacaaacc gtgcctaaca ttccgaaact gaacaacgaa     10620
     cgagaagttg actatactga acattcaaca agaactaatt catcaaggaa gcagccacga     10680
     gggtattctt gagccgactt catgcaccac tgtaacgttc cagatcaaga cttcaaaaca     10740
     ataaacaagt aaatagagat taagaacaag atatatttta agaggggatc gggatccttt     10800
     tttctatcat gttacgttcg agttaattaa caaaatattt gattgcaaaa ggaatattaa     10860
     atttctagta ggaccaaaga cgtaacattg aaaaagggaa catgatcctt tgcatgcatt     10920
     agttatagaa gagaattaat aaattaaatt gacaactatt actaaatatt aagaattaca     10980
     taatcaatga ggctacatag tgataccaaa agaatcatgt actaacatga aggaaaacaa     11040
     aaaattacaa aaaaaagaag tttttgaaga gtaaatacta ttaatattat taaaaataac     11100
     gatatcattg ttaaatgcac attcccgata aagtacaggg accattataa aggagtatat     11160
     aaaatcaaaa ctattattaa atttaaatta aaaagagtta aagttgctta cattatagcc     11220
     atattatatg catttgcatg acaattatta agaattatat ctagaaaaac caaaacagaa     11280
     taaaatcaag aaaaaaataa agtattaatt aagcattgta atcgaaacca aatgtattag     11340
     caattttttt ttactattaa gcgatagaat attaagtaac atcagtatct atacgagtat     11400
     tgtcgaaaca aatgataatt acctcattta caaacaaata ctgattacta aaattaagga     11460
     taccagatgt aaaatgtcaa tcaaaatata tatgcaaaga gaatatcaga aaatatgtta     11520
     ataaagaaaa aaatacaatt ccataactac aaagcatgtt atatagatat taagaaataa     11580
     tgtaaacgct cgcaagatag ggaaataaga ttaagaaacg aaattcacaa aaattaattg     11640
     tgagcgtcag aggctcacct cagaacgctc atcctagggg gaagg                     11685
//
ID   Gypsy-30-LTR_NVi repbase;    DNA;    INV; 1815 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1815
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 997-997 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1815 BP; 619 A; 395 C; 381 G; 419 T; 1 other;
     tgtgaaatgc tcactttctt tcgcattctt aatatattaa aaacaagtaa gattagttat        60
     tataaaggaa atcaatcgat acccttccta ctagaatgca gtgtataata agatatagaa       120
     aactcgacaa attcaataat taattgaatt aataagaata aggaacgaca acgtaaggca       180
     aagtaaacat gaaaatataa ttaaatccga agtaaaatca ttgaggaaaa tcaataataa       240
     tagtaaattc acgtagaaca atcaggataa aataaaaacg cacgcacaca ttgcggctct       300
     acggcggagg cataagacca agcgaaaaac accgatatga acgcacatat tacagtccta       360
     cagcggaggc acaaagctaa gcgaagcaca ctaatatgat cgcacacatt atgcacacac       420
     agatcacgac tccacggcgg gaacacagca gacgcaagta gaaaaaaaca agaagcctac       480
     tgtacatcat ggaccgcgca tacccgaaag cgatgcacgt gcaatgaagg gaaaacccac       540
     ggagcgcgca gcgctatcgg caagtgacac ataagtcacg cgcgctggaa gctcgaggag       600
     ccgccaaaga ggacaccgcg aaagtcggct caaaatgcac agaggaagcc tatgagcctg       660
     cagataagga aggtaaatca gaggcgagtt tgacaggaga agagcacgag gggactcgat       720
     gtactagagg agaggatttt tactctggtt ttctgattgg ccctccctgc aacgtcacat       780
     gcattaaacg ctccaaataa ggcaagaagc tgcatctagg cctcctaatt ggccaaacac       840
     ccaccccgcc gaggagacga aaaatcggag atcgcctctg ctacgagagc ataaaagagc       900
     ccagcaacag gtcctcacgt cctcagtcta ctctaaaaat catcaccacg cgcaagctct       960
     gcccgaattc ggttcggtgt ttcgcgactt agaataattt cggtgtcctg gaacttagaa      1020
     tattttcgac cgttcgggac ttagaatatt ttggatagta caaaaactta ggatattttc      1080
     tttctatcat ttaaaactta gaagaatttc ggccgtgcaa cacttataaa atcttcactt      1140
     tatcaaacta gcatacttac gttgttgttc gtcattcttg acaaaccaaa ataattaaca      1200
     aaacgtcaga tagttgcgag cgagcgttat ttacaagttg tttaaaattg aataaaataa      1260
     gaaattaaaa gcgaaatcgc gagtgtattt tgaacctgga aactcctgac tccttgcgga      1320
     ccaatccacm atcgaattta ctccgcttcg gaagctgagc caaagctgct gagaggacgt      1380
     gctggtagcc gagcagtcca gtagcagaga atagaaaaag gtaagtgact ttaattaaat      1440
     aagcatgcct caatcgtgca cttctctctt tctctctcat gattagaaat ccaagtagcc      1500
     tctcgaatat cacgaattcg cgataacgat atcacgatta gagtcacgtc cattcgacga      1560
     attacccgaa aagcagcgga atcaaaattt aggagtttaa attaaatttg tgcgtgtaac      1620
     gggaactagt gcaatttcga aagattttcc ggcggctact ggaggccgtt ctattaaata      1680
     gatcgcgaag gtagtcaagc accgacggcg ctcagcttcg cgctctgaag ctttgtcctc      1740
     gtccgtgctt atgaaagcaa aataacccgt agagttactg tccggtgaca gctttcaata      1800
     gcttaggaca taaca                                                       1815
//
ID   Gypsy-300_AA-I repbase;    DNA;    INV; 4667 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 24.03, Created)
DT   07-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-300_;
KW   Gypsy-300_AA-I; Gypsy-300_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4667
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4667
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 430-430 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..4471
FT                 /product="Gypsy-300_AA-I_1p"
FT                 /translation="MADANRMTKAELITWLQNRHVEFPPSATVRHLRILFE
FT                 QVTLRDKINAENDQQNGGHDEEADSANEEERELDAEIRVLQKRKFIADLRR
FT                 EIAAIEAELNVAQVAPIKPPDFRDIKYSVPCFRGGESYDAEKWIDDFEQAC
FT                 DSVHGDDEFRLMCVRRLMEPGYEGELFLRVDRSKTYQEFKNSFLENFNHVH
FT                 SVSEVIDTMKKTTFAAAKTTVMGYILRMQEIASRANIDEKQTVQLIVDGFR
FT                 DRSANIAVLYPATSIAQLKQLAHRYSQLREMYSASSVPNRVKTNIKLAAKP
FT                 STSEVRCFNCSGVGHFSASCPEPKREIGSCFRCGSNQHKLKDCPKPAPAHR
FT                 QQIALVDDFRRGCPVTDDELPEAIDGSIPVINRVSVSFPTDSKLQLSKTLI
FT                 SLFDTGSPINLIQRSAVPSHFIPTEKKCSGYKGVGGFPLCTYGIIPVCVTF
FT                 RNRTKTIKMYTVPDYFICHPLLLGRDFLLNFGITLCDKFFVSDIVRPKVEI
FT                 HEKNKLNISGEALHCSYNLFEDDFNSDKFQHCSKCRYFFSVYDPVTYDRSV
FT                 PDVFSIDMSDNIAESFNINSELSSDIMQQIRRIIELDYLDCSNIPTEKHNY
FT                 EMRLKLTTDVPISFAPRRLSYSDRKDVDGIVDSLLAEGIIRPSNSPYSFPI
FT                 VLRPKKSGEKRLCVDYRALNKVTVRDSYPIPLIDDCLERLEGKXYFTVLDL
FT                 KNGFHQVNMATDSIPYTSFVTPGGQYEYLKMPFGLRNAPAVFQRFINRVLE
FT                 PFIKEGSLVVYLDDVTLASHTIEEHLDLLQRVLRRLAEFRLEVKFKKCLFG
FT                 YTEIDLLGFTVSKKGIRPNGSHLQAINSLPLPNDAKQLSKXLGLFSYFRRF
FT                 VPFFSTISKPLRALTRPDMKFEFDDKCVEAFNTLRNSLVAAPVLALYSPDR
FT                 ETELHCDASADGFGGILLQKQDDGKFHPVAYFSQRTSPAESRYHSFELETL
FT                 AIIYSLRKFRIYLEGIQFRIVTDCSSVAMTLNQANMNRRIARWVLELENYH
FT                 YTIHHRSGKLMSHVDALSRLPSVSVKTIEDSAQIVSAIDPEDIAFQLQITQ
FT                 NRDSDISTLREKLENGPVNGYVLEDGLVYRSAGDDKLLLYVPKEMEINVIR
FT                 SAHEKIGHMGVTKCVEQIKMQYWFPKMQDKVEKFIQNCIRCIMYSIPSTSN
FT                 QKTLHNIPKKPLPFDTIHIDHFGPLPSIISKRKYILAVVDAFTKHVKLYAV
FT                 NSTSTKEVCACLEKYFEHYSRPRRVISDRGTCFTSLEFGSFLLDHNIEHVK
FT                 VGTASAQANGQVERVNRIIKSMLGKVSEPIQHSDWSKMLVKVEYALNNSVH
FT                 STTRQTPSMLLFGVNQRGREVDRLTEFLEDKQDDNVCRDVDKLRELAATHI
FT                 QESQEKNLNMFQKKHKPALNYSVGEFVVIRNVDTTIGTNKKFVPKYKGPYR
FT                 IHKVLPNDRYVIRDIENAQISQIPYDGIVEACRLKRWADWRDSYDYLED"
XX
SQ   Sequence 4667 BP; 1334 A; 926 C; 1072 G; 1333 T; 2 other;
     tcttcagaag tgggattgcc ctcgcgttta ccggaggacc agacttgtgt ggaggaagct        60
     aaatttggag ttggctgcag taatggcgga tgcaaatcgg atgaccaaag ccgagctcat       120
     tacttggctg caaaaccgcc atgttgaatt tccgccttcc gctacagttc ggcacttgcg       180
     gatcctgttt gaacaagtga cgctgagaga taaaatcaat gctgagaacg accaacaaaa       240
     tggcggccac gatgaggagg ccgattcggc taacgaggaa gaacgtgaac tggatgctga       300
     aatccgcgtg ctgcagaaac gaaaatttat tgctgattta cgtcgagaaa tagcagcgat       360
     tgaagccgag ttgaatgtgg cacaagtggc accaataaaa ccaccagatt tccgtgacat       420
     caagtattcc gttccgtgct tccgaggtgg tgaatcgtat gatgctgaaa agtggattga       480
     tgatttcgag caagcgtgtg attccgttca tggtgatgac gaattccggc tcatgtgtgt       540
     ccgccggttg atggaacctg gatacgaagg agaattgttc ctcagagtcg accgatccaa       600
     gacatatcag gagttcaaaa acagtttctt ggagaacttc aaccacgttc attcagtgtc       660
     ggaagtcatt gacacgatga agaaaacgac gttcgctgca gcgaagacaa ctgtaatggg       720
     atacatcttg agaatgcagg agattgcatc gcgggcaaac atcgatgaga aacaaacggt       780
     gcagttaatt gttgacggtt ttcgcgatcg gtctgcgaat attgctgtgc tctacccagc       840
     gacaagcatt gcacaactga agcagttggc gcatcgatac tcgcagttga gagagatgta       900
     ttccgcctct tccgtaccaa acagagtcaa gaccaacatc aaactcgcag caaagccttc       960
     aacctcggaa gtacgctgct tcaactgctc cggcgtggga cacttctctg ccagctgccc      1020
     agaaccaaaa agagaaattg gatcctgttt ccggtgcggc tcgaaccaac ataagctgaa      1080
     ggattgtcca aagccggctc ctgctcatcg tcaacagatt gctttggtag acgacttccg      1140
     acgtggatgt ccggtgacgg atgacgaatt gccggaggca atcgatggaa gcattccagt      1200
     gattaacagg gtaagtgttt cattcccgac agattccaaa ttgcaactta gtaaaacgtt      1260
     gatctcactt tttgacacgg gtagtccgat taatttaata caaagatcgg cagtccccag      1320
     tcatttcatt cccacagaga aaaaatgttc tggatataaa ggcgtaggag gatttccatt      1380
     atgcacatat ggaataattc cggtatgtgt gacatttcgc aatcggacca aaaccatcaa      1440
     aatgtatact gtgccagact attttatttg ccatccttta ctgttggggc gtgatttcct      1500
     cttgaatttt ggaatcacgt tgtgcgataa gttttttgtt agtgacattg taagaccaaa      1560
     agttgaaatc catgaaaaaa ataaattaaa catttccggt gaagcattgc attgttcgta      1620
     caatcttttc gaagatgatt tcaattccga taagttccaa cattgttcga agtgtcgtta      1680
     ttttttctct gtgtatgatc ctgtaacata cgatcgttcc gttcctgatg ttttctctat      1740
     tgatatgagt gacaatattg ccgaatcatt caacataaac agtgaattga gttccgatat      1800
     catgcaacag ataaggagaa tcatcgagct cgactatttg gattgctcga atattcctac      1860
     tgagaaacac aactacgaga tgagattaaa attgactaca gatgttccga taagttttgc      1920
     tcctcggcgg ttatcatatt ccgacaggaa agatgttgat ggcattgtag atagtctgct      1980
     tgctgagggt attattcggc ccagtaactc cccgtattcg ttccctattg ttctgcgacc      2040
     aaaaaagtca ggtgaaaaac ggttgtgtgt tgactatcga gccttgaata aagttacagt      2100
     acgtgatagt tatccaatcc cattgattga tgattgtttg gagcgtctcg agggtaaaam      2160
     atattttacc gtattggatc tgaagaacgg atttcatcag gtcaacatgg caactgattc      2220
     cattccgtac acttcatttg ttactccggg tggtcagtac gaatatttga aaatgccgtt      2280
     tggcttaaga aatgcccctg cggtctttca gcgctttatc aatcgtgtgt tggaaccatt      2340
     catcaaagag ggatcgttgg tagtatacct ggatgacgta acattagcta gtcacacgat      2400
     tgaagaacat ctcgatttgt tgcagcgtgt tctgagacgg cttgctgaat ttcgtttaga      2460
     ggtgaagttt aagaagtgtt tgttcggtta tactgagatt gatttgctgg gattcactgt      2520
     cagtaaaaaa ggcattcgtc caaatgggtc tcatttgcag gctatcaact ctttgccgct      2580
     cccgaatgat gcgaaacagt tatcaaaakc tcttggattg ttttcatatt ttcgtaggtt      2640
     tgtccctttc ttttcgacca tttctaagcc gttgagagca ttgacaaggc ctgatatgaa      2700
     atttgagttt gacgataaat gtgtcgaagc ttttaatacg ttgcgaaata gtttggtagc      2760
     cgctcctgta ctggcgttgt atagtcctga tcgagaaacc gagttgcatt gtgatgccag      2820
     cgctgatggg tttggaggaa tactgctaca gaaacaagat gatggaaaat tccatcctgt      2880
     ggcatatttt tcacagcgca ctagtccagc cgagtcacgt taccacagtt tcgaattgga      2940
     aacattggcc attatttact cgctccgtaa atttcgaatt tatctggaag gtatccagtt      3000
     tcgaattgtg acggattgta gttctgtagc aatgactttg aaccaggcca acatgaatcg      3060
     aagaatagct cgttgggttt tggagttgga aaactaccat tacaccattc atcaccgaag      3120
     tggaaagttg atgagtcatg tcgatgcatt aagccgcctc ccttccgttt ccgttaaaac      3180
     aattgaagat tccgcgcaaa ttgtttccgc cattgatcca gaagacatag cgttccagct      3240
     acaaataacg caaaatcgag atagtgatat ttctacgctt agggagaaat tggaaaacgg      3300
     gccagtaaat ggttacgtct tagaggatgg tttagtatat cgatccgcag gtgatgataa      3360
     acttcttctg tacgttccta aagagatgga aattaatgtt attcgatctg ctcatgagaa      3420
     gattggtcac atgggcgtta ccaaatgtgt tgagcagata aaaatgcagt attggtttcc      3480
     taaaatgcag gataaggttg aaaagtttat tcaaaactgt attcgatgca taatgtattc      3540
     tattccatca acaagtaacc aaaaaacgtt acacaatatt ccgaaaaaac cgttaccgtt      3600
     tgacactatc cacatagatc attttggacc gctgccgtct attatttcaa agaggaaata      3660
     catacttgca gttgtggatg cgtttaccaa acacgtcaag ctgtatgctg tcaactccac      3720
     cagtaccaaa gaggtctgtg catgtctcga aaagtatttc gagcactata gtagaccaag      3780
     gcgtgtgatc agcgacagag gaacttgctt tacttctctt gagttcggtt cttttctgct      3840
     ggatcacaat atcgagcatg tcaaagtagg tactgcgtca gctcaggcga atggacaagt      3900
     ggaaagggtg aatagaatta tcaagtctat gctcggtaaa gtgtctgaac caatccagca      3960
     ttctgattgg tcgaagatgt tagtgaaagt tgagtatgct ttgaataatt ccgtacattc      4020
     gactacacgc caaactccta gtatgcttct ttttggggtc aatcagcgag gtcgagaggt      4080
     tgataggctc actgagtttc tagaagataa acaagatgat aatgtttgta gagatgtgga      4140
     taaattgcga gagttagcag cgacacatat tcaagagtca caggaaaaga atttgaatat      4200
     gttccagaag aaacataaac cagctcttaa ttattctgtg ggcgaatttg ttgtgattcg      4260
     gaatgttgat actactatcg gaacaaataa aaaatttgta cctaaatata agggacctta      4320
     ccgaattcac aaagtgcttc cgaacgatcg atatgttatc agggacatag agaatgcaca      4380
     gatttcccaa ataccatatg atggcattgt cgaggcatgc cgattaaaac gttgggccga      4440
     ttggcgagac tcctacgatt atttggaaga ctaagttgca agaatactga cggatgttac      4500
     acttgcccta tttactgttg tgtctgtatg tgacccatcc atttattcct ttccctcata      4560
     ttgtagccta ctaaccccga gtcggccacg ggtgtttggt catcctttac taacacataa      4620
     atacgtacat tgctgatcga gtcgatcagt tgtcagaatg gccgagt                    4667
//
ID   Gypsy-300_AA-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 24.03, Created)
DT   07-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-300_;
KW   Gypsy-300_AA-I; Gypsy-300_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-281
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-281
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 452-452 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 281 BP; 93 A; 41 C; 70 G; 77 T; 0 other;
     tgtagtgata tgtagattgg ccacactgtc ctggtataat ttttcagtgt atatcctgaa        60
     tgacactatg tgttcgtatg agtgtatgag tgcgtgaggt actgtactaa agaagcatat       120
     gtatgagtgg ggaattgatt gagacgagtg agagttcgag aacacacgat agaggaaaac       180
     cgcatcagtt tgtaaaaagc cacgaacgaa taaacatcgg aaaactttta atatccgcgt       240
     ttcaaaagaa gtccgaaaaa gtaaagtttt ggccggttac a                           281
//
ID   Gypsy-301_AA-I repbase;    DNA;    INV; 4539 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-301_;
KW   Gypsy-301_AA-I; Gypsy-301_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4539
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4539
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..4513
FT                 /product="Gypsy-301_AA-I_1p"
FT                 /translation="MDGKQFQMFLEHQTNIFTQLMNTVSAAARHGSSSMQS
FT                 SNQPQASTSGVPVPQPSPLALEGDMSENFEFFQRSWENYSKAIGMDKWSVA
FT                 DNERKVSILLTVIGEPARKKFFNFELTPQQLADPQAALAAIQEKVISKRNV
FT                 IIDRLDFFSAGQSTSESIDDFCCRLKVLAKVAKLGVLEKELLAYKVVTANK
FT                 WPQLRTKMLTITDITFEKAVDLCRAEEIAAKRSQELGIFPEVNKITKFKGS
FT                 SKQKLLRCKFCGDIHEFAKGVCPALGKKCHKCKGKNHFEKVCKFAXKSKSR
FT                 KQRRVKEVKEDNSSSESECDSESESPDESEEEYEIGKIYDNSNNGGSVMAA
FT                 VNLKFSKSWKNILCELDTGANTSLIGHATLSKLSGIREPVLLPSKLRLQSF
FT                 GGNPINVLGQVKIPCRRQGKKFLLVLQVVDVDHCPLLSARASRELGLIKFC
FT                 NTVSFVKQEPTNQVADSDRLFNIFRVEAQKIIDRHGELFTGYGKLPGTVSL
FT                 ELDQTIKPSIQPPRRVPIAMRNKLKQELESLEKDGIITKETSHTDWVSNIV
FT                 IVQRGGEEAGVRICLDPVHLNKALRRPNLQFVTLDEILPELGKARVFSTMD
FT                 ARKGFWHVVLDEQSSKLTTFWTPFGRYRWTRLPFGIAPAPEIFQIKLQEVI
FT                 EGLAGVECIADDLLVYGIGDTIEEALANHNVCLERLLCRLKHHNVKLNLSK
FT                 LKLCEKSVKFYGHVLSDEGLKPDTSKIEAIRKYPRPTNRKEVHRFVGMVTY
FT                 LGRFIRNLSASLTNLRNLIPETQPWKWTPVEENEFNQVKAMVSDIGTLRYY
FT                 DVNLPITIECDASSIGLGVAVFQNDSVIGYASRTLTSTEKNYAQIEKELLA
FT                 IVFACVRFDQIIVGNPKATIKTDHKPLLSIFKKPLLSAPRRLQHMLLNLQR
FT                 YNLSVEFVTGKSNVVADALSRAPLLXVEXKDEYRKENIFKILEAVEEVKLS
FT                 NFLCVASSRLDEIMQETKKDSTMQLIIEYVRNGWPKTVDGVPDCVKVYHGY
FT                 RNEFSTQDGLIFRNDRILIPHVLRKKLIESCHASHNGVEATLRLARANLFW
FT                 PGMSSQIKDAVSSCDVCAKFAASQPNPPMKSHEIPVHPFQLVSMDVFFAQL
FT                 NGAKGKFLVTVDHFSDFFEVNRLPDLSPESVIHACKQNFCRYGIPQRVVTD
FT                 NGTNFTSQKMVKFAADWDFELVSSAPHHQQANGKAEAAVKIAKHLMKKAEE
FT                 SGNDFWYALLHWRNIPNKIGSSPVARLFSRSTRCGVPTAAENLLPKIVKDV
FT                 PAKIEANRKRSKLYYDRKTRNLPELSVGSPVYVQLHPESSKHWTPATVSHR
FT                 YNDRSYTVSVNGADYRRSLVHLKPRKVPDTLLSHGMPSYPDGSLDDSTQQS
FT                 HTSYNDNFAAESIPNQVVTETPTMPSTPTVTSPAKQPSTSELNSTMTTTNC
FT                 KSKGVPPVIPTKIDRPKRAVRVPEKMKDFRLEF"
XX
SQ   Sequence 4539 BP; 1391 A; 959 C; 1076 G; 1108 T; 5 other;
     tggtgtcaga agctgacgca ggcttctaag tattttcggc gtcatagtga gaaatcgcga        60
     aaataaagtg tacgaacttt agtgaataac aaagcaaagt ttcgcttcgg tacagtcgca       120
     tcggcggcca ttttggaata gcgaaaaaag tgatccggaa agcctcattg aaatggatgg       180
     aaaacaattc caaatgttct tggaacatca aacgaatatt tttacgcagc tcatgaatac       240
     agtatcagct gcagccagac atggttcctc atcgatgcaa tcgtccaacc aacctcaagc       300
     aagtacatca ggtgttccgg ttcctcagcc gtcgcctctg gcattggagg gagatatgtc       360
     agaaaacttc gaattcttcc agcgtagctg ggaaaattat tcgaaggcta ttggtatgga       420
     caagtggtca gtagctgaca acgaaaggaa agtgagcatt ttgctaaccg tcatcggcga       480
     gccagcaagg aagaaatttt ttaacttcga gctaacgccg caacagctag ctgatcccca       540
     agcagcgctg gctgcaatcc aggagaaagt gatatcaaaa aggaatgtga taatcgaccg       600
     tcttgatttt ttctccgctg gccaatcgac tagcgaatca atcgacgatt tttgctgcag       660
     attaaaagtg ctggctaaag tagccaagtt gggggtgctg gagaaggagc ttttggctta       720
     caaggttgta acagccaata aatggcctca acttcgaaca aaaatgttga caatcacgga       780
     tatcacattc gaaaaagcag tagatttgtg cagagcggaa gaaattgctg ccaaaaggtc       840
     tcaggaactg ggaatcttcc ccgaggtgaa caaaatcaca aagttcaaag gatcatcgaa       900
     gcaaaaactt ctgagatgca aattctgcgg tgacatacac gagtttgcaa agggcgtttg       960
     tccggccttg ggtaaaaagt gccacaagtg caagggcaaa aatcactttg aaaaggtctg      1020
     caagtttgct gkaaaatcga agagccgtaa gcaaagaaga gtgaaggaag tgaaagaaga      1080
     caatagcagc tcggaatcgg aatgtgatag tgaaagtgaa tcaccagatg aatctgaaga      1140
     agaatatgaa atcggcaaga tctatgacaa ttcaaacaat ggtggaagtg taatggcagc      1200
     agtgaatcta aagttcagta aatcatggaa aaacattttg tgtgaattgg acactggtgc      1260
     gaatactagt cttattggac atgcaacgct atcaaagcta tcagggattc gtgaaccagt      1320
     gctactgcca tctaaacttc gtctgcaaag ctttggaggc aacccaatca acgttctcgg      1380
     acaagtgaag ataccatgtc gtcgtcaagg caagaagttt ctcttggtgt tgcaagtcgt      1440
     agacgtcgac cattgtccac tgttgtcggc acgagcttcc agagaacttg ggctcatcaa      1500
     gttttgcaac accgtgtcgt ttgtaaaaca agagccaaca aaccaggttg ctgattcgga      1560
     cagattgttc aatatatttc gtgtggaggc acagaaaatc atcgaccgcc atggagaact      1620
     gtttactgga tatggcaagc ttccagggac ggtaagtttg gaattggatc aaacaataaa      1680
     accttcgatt caaccaccgc gtcgtgtgcc tattgcaatg agaaataagt tgaagcagga      1740
     attggagtct cttgagaagg acggcataat tacgaaagaa acaagtcaca cggattgggt      1800
     cagcaatatt gtcatcgtgc aacgtggcgg agaggaagcc ggagtcagaa tttgtctgga      1860
     tccagttcat ctaaacaagg cgctcaggag accaaatcta caattcgtca cccttgacga      1920
     gatattaccc gagcttggta aggctagagt tttctcgacg atggacgcta gaaaaggttt      1980
     ctggcacgta gtgttggacg aacagagcag caagttgact acattttgga ctccattcgg      2040
     gcgttatcgg tggacacgtc ttcctttcgg aattgctcca gccccagaga ttttccaaat      2100
     caagttgcag gaggtgatag aaggtctggc cggagtcgaa tgcatcgcgg acgatttgct      2160
     ggtatacgga atcggagata ccatcgagga agcattagca aaccataacg tgtgcctgga      2220
     aaggttgctt tgtcgtctga agcaccacaa tgtcaagcta aacttgtcga agctgaaatt      2280
     gtgtgaaaaa tcagttaaat tctacggaca cgtactctcc gacgagggtc tcaaaccaga      2340
     cacwtcaaag atcgaagcta tccgtaagta tccaagacca actaaccgca aggaagttca      2400
     cagattcgta ggaatggtga cgtatttggg acgtttcatc cgtaacttga gtgccagctt      2460
     gactaatcta aggaatctta taccggaaac acaaccttgg aaatggacac ctgtggaaga      2520
     aaacgagttt aatcaggtga aagcgatggt atctgatata ggaacgctac gatactatga      2580
     cgttaatctt cccataacga tcgaatgcga tgctagcagc attggtctcg gggtggcggt      2640
     atttcaaaat gattcggtca taggatatgc ttcaagaaca ctaacatcta cggaaaagaa      2700
     ctatgcccag atcgagaaag aactgttggc tatagtcttt gcatgtgttc gtttcgatca      2760
     gataatagta ggcaacccaa aagcaacaat aaaaactgat cataagccat tgctatcaat      2820
     tttcaaaaaa ccattgctgt cggcaccgcg ccgtttacaa cacatgttgt taaaccttca      2880
     acgctataat ctctctgttg agttcgtcac cggaaaaagt aatgtggttg ccgacgcatt      2940
     gtcccgtgca ccgttgctga amgtggaatm caaagacgaa taccgaaagg aaaacatctt      3000
     caagatactc gaagccgtcg aagaagtgaa gctatccaat ttcctctgtg ttgcaagttc      3060
     cagactggat gagattatgc aagaaactaa aaaggattca acgatgcagc ttattatcga      3120
     atacgttcga aacggatggc cgaaaacagt tgatggtgta ccagactgtg ttaaggtgta      3180
     tcatggatat aggaacgagt tttcaactca agatggatta attttccgca atgatcgcat      3240
     cctgattccc catgtactcc gtaagaagtt gattgaaagt tgtcatgcta gccacaatgg      3300
     tgtggaggcc actttaaggc tagcccgtgc caatttgttc tggcctggta tgtcaagtca      3360
     gatcaaggat gcggtgagta gctgtgacgt gtgtgcaaaa tttgctgcat cgcagccgaa      3420
     tcccccgatg aaaagccacg agattcccgt tcatccgttt caacttgtgt caatggatgt      3480
     cttcttcgct caactgaatg gtgccaaagg aaagtttctc gtwaccgttg atcacttctc      3540
     cgatttcttc gaggtgaatc gtttaccaga tttgagtccc gaatccgtta ttcatgcatg      3600
     caagcaaaat ttctgtcgct acggaatacc acaaagagta gtgacagaca acggtactaa      3660
     tttcactagc cagaagatgg tcaagttcgc agctgattgg gatttcgaat tggtttcatc      3720
     tgcgccgcac catcaacagg ccaatggaaa agcggaagcg gcggtcaaaa tcgcgaagca      3780
     tctcatgaag aaggccgagg aaagtggaaa tgatttctgg tacgcactcc ttcattggcg      3840
     aaacattcca aataagattg gttcaagtcc cgtggcaaga cttttctcac ggtccacccg      3900
     atgcggcgtc cctaccgctg cagaaaacct tctaccgaag atagtgaaag atgttccagc      3960
     taaaatcgaa gcgaatcgta aacgctcaaa actgtattac gacaggaaaa ctaggaactt      4020
     accagagcta tctgttggtt ctcctgttta tgtccaatta catccggaat cgtcaaagca      4080
     ttggactcca gctaccgttt cccatcggta caatgacagg tcgtatacag tgagtgtcaa      4140
     tggtgccgat taccgtcgtt cgttggtcca tctgaagccg cgtaaagttc ccgatacgct      4200
     actaagccat ggaatgccat cctatcctga cggttcactt gatgacagca ctcagcaatc      4260
     ccatacaagt tacaacgata attttgctgc agaaagtatt ccgaaccagg ttgtaactga      4320
     aacaccaact atgccttcga cgcctactgt gacatcacca gctaagcaac catcaacaag      4380
     cgagctgaat tcgacgatga caacaactaa ctgtaaatcg aagggggttc cgcccgtcat      4440
     accgacaaaa atagaccgac cgaaaagggc agttcgagta ccagaaaaaa tgaaagattt      4500
     tcgtttggag ttttgatatt ttttaaagaa caaggagga                             4539
//
ID   Gypsy-301_AA-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-301_;
KW   Gypsy-301_AA-I; Gypsy-301_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-182
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-182
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 368-368 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 182 BP; 44 A; 39 C; 36 G; 63 T; 0 other;
     tgttgtagta ttgatgcacc cctcggtgct cttccgttat accggtttta cctacctata        60
     cgagtgacag ctcctacagc tgccatcatt atcgttcgag taaccggcgc gttaagatcg       120
     gtgttttctc aataaagtga attgattaat gttaaacctg tgttttggct attattaaaa       180
     ca                                                                      182
//
ID   Gypsy-302_AA-I repbase;    DNA;    INV; 4990 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-302_;
KW   Gypsy-302_AA-I; Gypsy-302_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4990
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4990
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 431-431 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           540..4889
FT                 /product="Gypsy-302_AA-I_1p"
FT                 /translation="MAYVAPNIDPYRKGQSFASWFKRLGYHFRINKVADEN
FT                 KKDQMFLLGGEYLFEVAQNLYLSEQLLDAAPLDELVQKLKQKLDKTDSALI
FT                 QRFKFGSRIQQPGETASDFLFSLKLQAEYCNFKDDKDGRILDRVLIGLSDD
FT                 ALRQKLLGEDGEKLNLAQAEKMITTWEMAASHAKALTKDDISTQIASVGSL
FT                 TGGRGAVLQRMANLSRGRGPVKSRLGYRSQFQSPTRSTERSTTSYNRYNDR
FT                 SSSQSRQSKQVRFREYQRRFQDAEVYPAEMKRSQEPIYDQRWCSYCGVRGH
FT                 VRRKCLKLKQLKQDPINNIDLEKPGSSMENKLSSMMNRMAWEDKTDDSDQG
FT                 ELDCMQISTINQISSPCLLELTIEGKTLQMEVDSGASVSVIGKKLFMTNFN
FT                 VPLQISSKKLIVVNGSSLKVAGEAVVYVEFRDKRKILKLLVLDCDHDFVPL
FT                 LGRTWLDVFFPDWRDFFDNLAPVNNVISNKNNELTNEIKSKFSDVFIKDFS
FT                 SPIRGYEAELVLKTDTPIFRKAYDVPFRLRDKVSNYLDRLQRENVITPIRT
FT                 SEWASPVIVVAKKNGDIRLVIDCKVSINKLIIPNIYPLPVAQDLFAELAGC
FT                 KVFCALDLEGAYTQLSLTERSRKFMVINTIKGLFTYNRLPQGASSSAAIFQ
FT                 QIMDQILQDIENVYVYLDDVLIAGKDLEDCRRKLFIVLDRLSKANIKVNWE
FT                 KCKFFVTSLEYLGHNISEKGLSPCASKIATIQNAKTPKNVTELKSFLGLLN
FT                 YYNKFIPGLSSKLFCLYNLLKNDVKFNWNDDCNKAFENAKNLLLETDFLEF
FT                 YDPRKPIVIVSDASGYGLGGVIAHCIDGVEKPISFASFSLNSAQKKYPILH
FT                 LEALALVCSIKKFHKYLYGQKFTVFTDHKPLVGIFGKEGKNAIFVTRLQRY
FT                 ILELSIYDFEIQYRPSAKMGNADFCSRFPLEQSVPKELDVECIKHINFSND
FT                 FPIDIEDIAKQTKTDSFLQQIIRFMRHGWPQRLDKRFVDIFANQHDLEIVE
FT                 GCLLYQDRVIIPQQLQDEILRLLHANHVGIVRMKQLARRSVYWYGINADVE
FT                 KFVSECDACASMAAYPKQKIESKWTPSTRPFGRVHIDFFYFKQHVFLLIVD
FT                 SFSKWVEVEWMREGTSCTKVMKKLLAYFARFGFPDTLVSDNGPPFNASDFK
FT                 KFLERQGIRVLNSPPYNPASNGQAERLVRTVKTVLKKLLLDPEYMKLELEN
FT                 LISLFLINFRNNSSTMKGFLPSEKVLAYTPKLLIDLINPKRHSSKPNVHTN
FT                 THNRNDEMSSGSNDNCSMAVRKDPMDSLMAGDVLWYKNHDPRHQAKWLKAH
FT                 FLKRVCKNILQITIGNGITTTAHRSQIKIANDSSREVRRRMVVHVDPNVDE
FT                 PDPLPLPRVDAEEPFQSSSPDASPPQETSDEEEPFRGFPEFELEEAPSSTV
FT                 KPNRKRKIETSVALDGQPRRSKRMRRNHFRNEFEYY"
XX
SQ   Sequence 4990 BP; 1553 A; 859 C; 1112 G; 1466 T; 0 other;
     tttggcgacg aggtaaagca ggaaaccgta gtgaagtgat ttttttttcc ttcgctgcaa        60
     gaggcggcag cagaaaagtg cactaccacc tgagcggcgg ctggaattta accttcaaga       120
     ggtcggattc cccatcatca cggcggcgga gttttcacgt tcgtggtggc agcagtaacg       180
     aagggtatcg gaagtcatcc ggagacgttc cgaaggattg gtagaggtaa gaaacagggt       240
     tttttttttg cctgaagcgt gtttttgtgc tttgaaaacg ccattttgtg gcataaaacg       300
     acgctaagtg atatctattg tgttgataga caaagactag acaataccaa gtgtgaataa       360
     ttaacggaag ccaattatta gattttatga gagttttttt tttcctttta tttctgttaa       420
     gtgcaggttg tttaggaacg acagtaagcc gagtgatttt ccgactggaa tcgcagtttt       480
     agaaatttgt gtttctgata attttgtcgg cgtttgtggg acaaatttac attagcataa       540
     tggcgtacgt agccccaaat attgacccat accgcaaagg gcaatctttt gcatcctggt       600
     ttaagcggct tggttatcat tttcgcatta ataaggtggc ggatgagaat aagaaggacc       660
     aaatgttcct cttggggggc gaatatcttt ttgaagtggc acagaatttg tatctcagcg       720
     agcaattgct tgacgcagct ccgcttgatg aattggtgca gaaacttaag caaaaactag       780
     acaagacgga ttcagcttta attcaacgtt ttaaattcgg ttctcgcatt cagcaacctg       840
     gtgaaactgc cagcgatttt cttttttctc taaaactcca agctgagtat tgtaatttta       900
     aggacgacaa agacggtcgc atccttgatc gtgttctcat tggtttgtcg gatgacgctt       960
     tgagacagaa gttattgggc gaagatgggg aaaaacttaa tctagctcaa gccgagaaaa      1020
     tgattacaac ttgggaaatg gcggcttctc atgccaaagc tttaacaaaa gacgatatct      1080
     ccacgcaaat tgcttctgtc ggtagcctta ctggaggtcg aggtgctgtt ttacagcgta      1140
     tggcgaattt atcgcgcggc cgaggaccgg taaaaagccg gctagggtac aggtcccagt      1200
     ttcagtcccc gacaagaagt accgaacgca gcactacatc atacaacagg tacaacgatc      1260
     gatcctcttc gcagtcccga caatcgaagc aggtgcggtt ccgtgaatat cagcgcagat      1320
     tccaagatgc agaggtttac ccagcggaaa tgaagcgtag ccaggaaccc atatacgatc      1380
     agagatggtg cagctattgt ggtgtgcgag ggcatgtgag aaggaagtgt ctcaaactga      1440
     aacaattgaa gcaagatcca attaacaaca ttgatctgga gaaacctggc tcaagtatgg      1500
     agaacaaatt gtccagcatg atgaatcgga tggcgtggga ggataaaact gatgattcag      1560
     atcaaggtga attagactgt atgcaaattt caacaattaa ccaaataagt agcccttgtt      1620
     tactagaact aaccatagag gggaagacat tgcagatgga agttgatagc ggagcttctg      1680
     tttctgttat tgggaaaaag ttatttatga ctaatttcaa tgttcctctt cagataagtt      1740
     caaagaaatt aattgtggtt aatggttcca gtttaaaagt tgctggagaa gctgtggttt      1800
     atgttgaatt tcgagataaa aggaaaattt taaaactttt agtgttggat tgtgatcatg      1860
     attttgttcc tttattggga agaacatggt tggacgtttt ctttcccgat tggcgtgatt      1920
     tctttgacaa tttagcacct gtaaataatg tgattagcaa taaaaacaat gaactgacga      1980
     atgaaatcaa aagcaaattt tctgatgtct tcattaaaga cttttcctct ccaattagag      2040
     gttatgaagc cgagttggtt ttgaaaacag acacacctat ttttagaaaa gcttatgacg      2100
     ttcccttcag gttgagggat aaagtttcaa attatttaga tagattgcaa agagagaatg      2160
     taataactcc gatacgaaca agtgaatggg catctcctgt tatagtggta gcaaaaaaga      2220
     atggcgatat tcgtctagta attgactgta aagtttcgat aaacaaactc attattccta      2280
     atatttatcc tttacctgtt gcacaagatc tttttgctga attggcaggg tgtaaagttt      2340
     tctgcgcact tgatttggaa ggcgcttaca cccaattgtc attgactgaa cgttcaagaa      2400
     aattcatggt aataaacact ataaaaggtc tttttaccta caatagattg ccacagggag      2460
     cttcctctag tgcagctatt tttcagcaga taatggatca gattttgcag gatattgaga      2520
     atgtgtatgt ttacttggat gatgttctca tagcaggaaa agatttggaa gattgcagac      2580
     ggaaactttt tattgttttg gatagattgt ccaaagcaaa tattaaagta aattgggaga      2640
     aatgtaaatt ctttgttact agtttagaat atctagggca taacattagc gaaaaaggtt      2700
     tgtcgccgtg tgcaagtaaa attgccacaa ttcaaaatgc aaaaacacca aagaacgtaa      2760
     ctgagctcaa atcatttttg ggtttactca attactacaa caagttcatt ccagggttgt      2820
     cttctaagtt attttgcttg tataatttat tgaagaacga tgttaaattt aactggaatg      2880
     atgattgcaa caaggctttt gaaaacgcga agaatttact tcttgaaaca gattttcttg      2940
     aattttatga tccaagaaaa ccgattgtaa ttgtctctga tgcttcaggc tatggacttg      3000
     gcggagttat tgcgcattgc attgatggtg tggagaaacc cattagtttc gcttcatttt      3060
     cactcaattc agctcaaaag aaatatccaa ttctccattt ggaagcgctg gcacttgtgt      3120
     gctcaataaa aaagtttcat aaatatcttt atggacagaa atttacggta tttaccgacc      3180
     ataagccatt ggttggaatt tttggtaaag aaggtaaaaa tgcgatattt gtgacaagat      3240
     tgcagcgcta tattctggag ttgtcaatat acgattttga aattcagtac aggccttctg      3300
     cgaaaatggg aaatgccgat ttttgttcgc gatttccatt ggagcagtcg gttcctaaag      3360
     agctagatgt agagtgcatc aaacacataa atttcagtaa tgatttccca attgatattg      3420
     aggatattgc caaacaaaca aaaactgact cattcttgca gcaaatcata agatttatgc      3480
     gccatggttg gcctcaaaga ctggataaac ggtttgtgga tatttttgca aatcaacacg      3540
     atttggaaat agtggaaggt tgtttgcttt accaggacag agtaataatt ccgcagcaat      3600
     tgcaggatga aattttaaga ctgttacatg ccaatcatgt cggaattgtg aggatgaagc      3660
     agcttgcaag acgctcagtg tactggtatg gaataaatgc tgatgttgaa aagtttgtta      3720
     gtgaatgtga tgcttgtgct agtatggcag cgtacccaaa gcagaaaatt gaatctaaat      3780
     ggacaccttc cacaagacca tttggtagag tgcacattga ttttttctac ttcaagcaac      3840
     acgttttctt attgatagtt gacagctttt caaaatgggt ggaagtagag tggatgagag      3900
     aaggcacatc gtgtacaaaa gtgatgaaga agttattagc atattttgca aggtttggtt      3960
     ttccagacac tttagtatct gacaatggtc ctccattcaa tgcatctgat tttaagaaat      4020
     ttcttgaaag gcaaggaata agggtcctaa atagtcctcc atacaatcct gctagtaatg      4080
     gccaggcgga gagactcgtt cgtacggtta aaaccgtttt aaaaaagttg cttcttgacc      4140
     cagaatatat gaaattggaa ttggagaact tgattagctt attcttaata aattttagga      4200
     acaacagctc gacgatgaag ggtttcctac cttctgagaa agttttagca tatacaccta      4260
     aattactaat cgatttgatt aatccaaaac gacattctag caagccaaac gtacatacta      4320
     atacccataa ccgcaatgat gagatgtctt ctggatctaa cgataactgt agtatggcgg      4380
     ttcgtaaaga tcctatggac agtctgatgg cgggagacgt actatggtac aaaaaccatg      4440
     atccccgaca ccaggctaaa tggcttaaag cgcattttct aaaacgtgtt tgtaaaaata      4500
     tattacagat tacaattgga aacggaataa ctacaaccgc gcacagaagc caaatcaaga      4560
     tcgccaatga ctcgagcaga gaggtgcgtc ggaggatggt ggtacatgtc gatcccaatg      4620
     tcgatgagcc tgatccatta ccactaccaa gagtcgacgc cgaggaacct ttccagagta      4680
     gtagtcctga tgcatcacca ccacaagaaa cgagcgatga agaagaacca tttcggggtt      4740
     tcccggagtt cgagttggaa gaagctccat catcaacggt caaaccgaat cggaaacgaa      4800
     agattgagac aagtgtggcg ctcgatggcc agccacgacg ttcaaaacga atgagaagaa      4860
     atcatttcag aaatgaattc gagtattatt gataatcaag ttttttacat tgtttgtaaa      4920
     tttcaatgat aatattagtt tttttttata actccagtag tttatcgaat aactctaaaa      4980
     gaggaaggac                                                             4990
//
ID   Gypsy-302_AA-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-302_;
KW   Gypsy-302_AA-I; Gypsy-302_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-320
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-320
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 383-383 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 320 BP; 93 A; 68 C; 52 G; 107 T; 0 other;
     tgatatgtcc actgaattga ttattattag agtgcttttg ccataaaggc atatcgtgtt        60
     aattgtatta cgaaaggcgt aaacttgatt catagtgtat ttgtcaaatg tttatagcaa       120
     ataccttcta ataaacgatc cgacgactgt cggtctctct tgttatcctg acatcgaacg       180
     aacaacacgt atctctacga agctccgaaa cctacaagta ccttttactt aacaccttca       240
     ccgttacgat aagtctgccc gcgagtgtcc gcttgctgaa tcttaatcac tttttttaac       300
     caagttattg gtacataata                                                   320
//
ID   Gypsy-303_AA-I repbase;    DNA;    INV; 4408 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-303_;
KW   Gypsy-303_AA-I; Gypsy-303_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4408
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 432-432 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..4395
FT                 /product="Gypsy-303_AA-I_1p"
FT                 /translation="MPDPTLQQNGGGVSQQPNSNQMLMQILQQQQQLMTQL
FT                 TQQVSATQLAIQKMSGDETVLDSLSSNITEFVYDSEQGCTFDSWYARYADL
FT                 FDKDAEKLDDAAKVRLLMRKLNPAAHERFTSFILPRLSKELTFSETVAKLK
FT                 TIFGSPVSVFHRRYLCLQTTKDDSDDFVSYSCKVNRACVDFKLRDLSEEQF
FT                 KCLIFVCGLKSSRDSDIRMRLITKLNETADISLEKVVEECKSLHNLKQDNS
FT                 LVEKQQSFSAVNAVHQDRPPKPKHKQGGGGKVNNNQPKTPCWSCGGMHFSA
FT                 DCPFREHQCRKCKRKGHKEGYCACFSSGSTSGNSKKKKNKYSPKSSKDVKI
FT                 VSVKNISQRRKYSEIRINKVLVQLQVDSASDITIISDKHWRKIGQPQGTAP
FT                 SCNAKSASGGSLDLAREFWCDVNIGGKTKRGLCRVASPNLDLNILGSDWIE
FT                 LFGLWDVPINSFCNKINSQQSRTEQSLQVQFPKVFSNEMGLCTKTKVRLTL
FT                 KGEPKPVYRPKRPVAYSQQSAVEDELQRLQNLGILKRVDHSDWAAPIVVVR
FT                 KPNGKVRICADFSTGLNEALESNQCPLPLPEDIYTKMAGCKVFSHIDLSDA
FT                 YLQVEVDPRDQHLLTVNTHKGLFRYTRLTPGIKSAPGAFQQIMDAVLSGIK
FT                 KTCGYLDDVLVGGRMQEEHDHNLKQVLQRLEDYGFTVRIEKCSFNMEEVEY
FT                 LGQIMDGDGIRPDPEKTSAIATMPPPQDVSSLRSYLGAVNYYAKYVPEMRK
FT                 LRFPMDQLLKSGAKWNWSEACQRSFNRFREILQSPLALIHYNPKLKIIVSA
FT                 DASNYGIGARIAHKLPDGSVKPIAHASRSLTPAESNYSQIEKEGLALIFAV
FT                 TRFHRMIFGRQFVLETDHKPLLAIFGSKKGIPVYTANRLQRWALTLLLYDF
FT                 SIKYVNTESFGYADILSRLINTHVRPNEEYVIASIELENTMEDIIKQSVEV
FT                 LPVTFNMIQAGTQADAVLKQVKQFVQTAWPSNQSKISDPQLQQFHQRRESL
FT                 SIVSDCLTYGERLVIPTKFRDRVLRLLHKGHPGVERMRSIARNYVYWPGID
FT                 EQISQRVRSCEECSRAAKTNSKTVESWPIPEKPWQRIHADYAGPVDGNYYL
FT                 IVVDAFSKWPEVISTKRITTSATVTMFREIFSRNGMPETLVTDNGTQFTSE
FT                 EFEAFCSTNGILHLKTPPYHPQSNGLAERFVDTFKRGLRKITAGGEILREA
FT                 IDTFLLCYRSTPCRSAPEGKSPAELLLGRKLRTSMDLLKPPTSFYKQAESK
FT                 QDVQFNRKHGTKARNYDAKDLVWTKVHRNNAWSWEPGQVIERIGRVIYNVW
FT                 LPEKRNLIRAHCNQLRKRYESEQSASTVEQQSSKIPLDILLDSCGFSQPTS
FT                 EQAEPESVEPSQAILNELQQREVRSRAPKKPPRATTQQQPSQLRQSSRTKR
FT                 QPVRYEPYHLF"
XX
SQ   Sequence 4408 BP; 1334 A; 1022 C; 1032 G; 1020 T; 0 other;
     aagtggcgac gagtattttc ggtgccggtt tcgcgaaatt cagttttccc gtcgcgtgaa        60
     agtcagtttt acggtcgaca aaagttcgcg tgtgcagtga taaaagttga ggttagcatc       120
     atgccggatc caactctgca acagaatggc ggaggagtct cgcagcagcc aaattccaac       180
     cagatgctga tgcaaattct ccaacaacag cagcagttga tgacgcagct cactcagcag       240
     gtttcagcta cccagctggc cattcagaag atgtcaggag acgaaactgt tttggattcg       300
     ctctccagta acatcaccga gttcgtctat gattcggagc aaggctgtac tttcgactct       360
     tggtacgcac ggtatgcgga tttgttcgac aaagatgcgg aaaaactgga cgatgcagcg       420
     aaagtccggt tactgatgag gaaattgaat ccagcagcac atgaacggtt taccagcttc       480
     attttgccta gactgtcaaa ggagctaaca ttcagtgaaa cagtcgcgaa attgaaaaca       540
     attttcggat ctccagtgtc agtgtttcac cgccgttatt tgtgcctaca aacgacaaaa       600
     gacgattccg atgattttgt gtcgtattcg tgcaaagtta acagagcgtg tgtggatttc       660
     aagttgcgcg acctctcaga ggaacagttt aagtgtctca tttttgtgtg cggtctaaaa       720
     tcttcgcgag attcggacat tcgcatgagg ttaattacca aattaaacga gacagcggac       780
     atttctctcg aaaaagtggt tgaagaatgt aaaagtttac ataacctgaa acaggacaac       840
     agtcttgtgg agaaacagca atcattcagt gctgtgaatg cagttcatca ggatcggcct       900
     cccaaaccta aacacaagca aggcggaggg gggaaagtga acaacaatca accaaagact       960
     ccatgttggt catgcggcgg aatgcatttt tctgcagatt gcccattccg tgaacatcag      1020
     tgtcggaagt gtaaacgaaa aggccataaa gaaggatatt gtgcttgttt ttcgtctggc      1080
     agtaccagtg gcaacagtaa gaagaagaaa aataagtaca gtcctaagag cagtaaagat      1140
     gtgaagattg tgtcagtgaa gaacatcagc caaaggagga agtattccga aatcagaatc      1200
     aacaaggttc tagtgcaatt gcaggtcgac tcagcgtcgg atattacgat aatttccgac      1260
     aaacattggc gaaaaatcgg acaaccacaa ggaactgcac cctcctgcaa tgccaaatca      1320
     gcttctgggg gatcacttga tctcgcccgg gaattttggt gcgacgtaaa catcggtggc      1380
     aaaacaaaac gaggtttgtg tcgtgttgct tcacccaatt tggatctgaa cattctgggc      1440
     tcggactgga ttgagctttt cggattatgg gacgtgccaa tcaactcgtt ctgtaataaa      1500
     atcaacagtc aacagtcccg tacggaacag tctctgcaag ttcaattccc gaaagtattt      1560
     tcgaatgaaa tgggactctg tacgaaaaca aaagttcgac tgacactcaa aggggagcca      1620
     aaaccagtct accgaccgaa gcgtccagtt gcttacagtc agcagagtgc ggtagaagac      1680
     gaacttcaac gcttgcagaa tttgggaatc ctcaaacgag tcgatcattc agattgggca      1740
     gcaccgatcg tcgttgtgcg gaaaccaaac ggtaaagtcc gcatttgcgc tgatttttca      1800
     accggactca acgaagctct agagtcaaat cagtgcccac ttcctctacc agaagacatc      1860
     tacacgaaga tggccggatg taaggtcttc agtcatattg acctttccga tgcatacctc      1920
     caagtggaag tggacccccg agatcaacat ctgctaacag tcaataccca taagggactt      1980
     ttccgctata cacgcctgac acctggcata aaatcagctc cgggtgcatt ccagcagatc      2040
     atggacgcag ttttgagtgg catcaaaaag acctgtggtt atttggatga cgtgttagtc      2100
     ggtggtcgta tgcaagaaga gcatgaccac aatctgaaac aagttcttca acgtctggaa      2160
     gattacggat tcacagtacg gatcgagaaa tgcagtttca acatggaaga agtggaatac      2220
     ttggggcaaa ttatggatgg agatggaatc agacccgatc cggaaaagac ttcagctatc      2280
     gccaccatgc caccgcctca agatgtttcg tcactccgtt cttacctagg agccgtgaac      2340
     tattacgcaa aatatgttcc agaaatgcgt aagttgcggt tcccaatgga tcaactgtta      2400
     aaatctggag cgaagtggaa ttggtcagaa gcatgtcaac gttcattcaa ccgtttccgt      2460
     gaaatcctgc agtcaccgtt ggcgctcata cactacaatc caaaattaaa aatcattgtg      2520
     tcagcggatg cgtcaaatta cggaatcgga gcgcgcattg cccacaagct accggacgga      2580
     tcagtgaaac cgattgcaca tgcgtcgaga agcctcacac ccgctgagtc caactacagt      2640
     caaatcgaga aagaaggact tgcgctgatc ttcgcagtaa cacggtttca tcggatgatt      2700
     ttcggacgac aattcgtttt ggaaacggac cacaagcctt tactagcgat ttttggttcc      2760
     aaaaaaggca ttccagtgta cacagccaac aggttacagc gatgggcatt aactctgctt      2820
     ctgtatgact tcagtatcaa gtacgtcaat acagaaagtt tcggttatgc agatatcttg      2880
     tcccgtctca tcaacaccca cgtgcgtcca aacgaagagt acgtcatcgc atcgatagag      2940
     ctggaaaaca ccatggaaga tatcatcaag caatcagtgg aagttctccc agtcacgttc      3000
     aatatgattc aagcaggaac acaggcggat gcagtactga agcaggtcaa acagttcgtc      3060
     cagacagcct ggccgtccaa tcagtccaaa atcagcgatc cacagctaca acagtttcat      3120
     caacgtcgcg aaagcttatc aattgtttcc gattgcctca cctacggaga acgattggtc      3180
     attccaacca aatttcgtga tcgagttcta cgacttctac acaaaggaca tccaggagta      3240
     gaaaggatgc ggtccatagc acgtaattac gtctattggc ctgggatcga cgagcaaatc      3300
     agtcagcgag ttcggtcgtg tgaagaatgt tcgagagcag ccaagacaaa cagtaaaacc      3360
     gtggaatctt ggcctatacc agaaaagcct tggcagcgga tacatgcaga ttatgctgga      3420
     ccagtcgacg gtaattacta cttgattgtt gtcgacgcat tcagtaagtg gccagaagtt      3480
     atctctacca agcgcatcac aacatctgct actgtaacca tgttccgaga aatcttttct      3540
     aggaacggta tgccagaaac attggttaca gataacggta cacagttcac cagtgaagag      3600
     ttcgaagctt tctgcagtac caacggtatc cttcatctga agacaccacc gtatcatcca      3660
     cagtcgaacg gactcgctga gagattcgtc gatacattca agcgaggact tcgaaaaata      3720
     actgcggggg gagagatact ccgtgaagca attgacactt ttcttctgtg ttaccgctcc      3780
     actccgtgcc gtagcgcgcc tgaaggaaag tcgccagcag aactgttact aggcagaaaa      3840
     ctccgaacat caatggatct actgaaacca ccaacttcgt tctacaagca agccgaatcc      3900
     aaacaagacg ttcagttcaa ccgtaagcat ggcacaaaag cgaggaacta cgatgccaaa      3960
     gatttggttt ggacgaaagt acatcgaaac aacgcctggt catgggaacc cggtcaagtg      4020
     atagaacgga ttggtcgtgt catctacaac gtttggctac cagagaagcg gaatcttatc      4080
     agagcacact gcaatcaact gaggaaacgg tatgaatcag aacagtcagc atcaacagta      4140
     gaacagcagt catcaaaaat tccgctagat atacttttgg attcgtgcgg tttcagtcaa      4200
     cctacatctg aacaagcaga accagaatca gtcgaaccgt cgcaggcaat ccttaatgaa      4260
     ctacagcaaa gggaggttcg aagccgagca cctaaaaagc caccaagagc tactactcag      4320
     cagcaaccaa gccagcttcg ccagtcttca aggacaaaaa gacaacccgt gaggtatgag      4380
     ccgtatcatc tcttctaaga gggggagg                                         4408
//
ID   Gypsy-303_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-303_;
KW   Gypsy-303_AA-I; Gypsy-303_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 384-384 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 267 BP; 84 A; 65 C; 50 G; 68 T; 0 other;
     tgttgggagg accaccctac gaaccaacaa ggcaccatct cactaccggt gggctcatcg        60
     tctgacacac tctgtcagag cgacagacgt ctaccgaatg aaagggaatg atctgtcacc       120
     cgacagcaac agttacaata gatcagacag aatgtattta accgccaact gaaaaccacg       180
     ccgcgtttta tcctgtaaat ttaatcagtt ttaaataaag tttttaatat gtttgttgtg       240
     taaatcatcg gcccatttat cacaaca                                           267
//
ID   Gypsy-304_AA-I repbase;    DNA;    INV; 5152 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-304_;
KW   Gypsy-304_AA-I; Gypsy-304_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5152
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5152
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           763..5025
FT                 /product="Gypsy-304_AA-I_1p"
FT                 /translation="MSANMAFTTEPYRRGASFTDWFTRLKYFFKVNNVKEE
FT                 DKMAYFVTLSGPSMFAEIKLLYPAGNFEEVAFEDLIAKLKSRLDKIEPDLV
FT                 QRYKFSSRVQNPGETTEDFVLALKLQAEFCGFDNYKEIAILDRLIVGINDK
FT                 NLRQRLLGEEKLSLANAEKIIATWEIAKANAGAVDEGPNGNTGFVAAIRNG
FT                 SERVGIAYGKLNRTFDLAKRYQEEEALRGTGSGRGPVKSRLGMRSYDEGHH
FT                 SRGKRHYGTKTVHFRQDGGFQKRQRPDYSQMVCNFCGMKGHIKKKCFKLKN
FT                 LERDAVNLVDSYRPGPSADRHINELMERMRTVDSEDEESDTGELHCMLVSS
FT                 INKISNPCLIKVKVEGKDLEMEVDCGSSVSVISKSRYMSDFDIPLRKYSKQ
FT                 LIVVNGAKLKIEGEATVSVKFKNKMKLLQLLVLDCENDFYPLFGRTWLDVF
FT                 CPDWRQFFSESLEVNNVKDEAANCDVDYIKKRFSNVFVKNFGQPISGFKAE
FT                 LVLRDETPIFKKAYEVPYRLRDKVSAYLDKLEKENVITPIDRSEWASPIII
FT                 VMKKNNEIRLVIDCKVSINKSIVPNTYPLPTAQDVFANLSGCRVFCALDLE
FT                 GAYTQLELSERSRRFVVINTMKGLYVYNRLPQGASSSASIFQQVMDKVLQG
FT                 IDHVSVYLDDVLIAGRNLEECKVKLLMVLERLAKAGIKVNFGKCNFFVSEL
FT                 THLGHVISEKGLRPCNDKILTIEKAKAPKNESELKSFLGLLNYYHKFIPHL
FT                 SSKLYHLYNLLKNNVKYVWDENCQKAFEESKTLLMNTQFLEFYDPRKDIVV
FT                 ISDASSYGLGGLIAHVIGGVEKPISFTSFSLNEAQKKYPILHLEALALVCT
FT                 IKKFHKYLYGQRFTVYTDHKPLVGIFGKEGKNSIYVTRLQRFILDLSIYEF
FT                 DIVYRPANKLGNADFCSRFPLQQEVPEELDAEVIKSLNFSENLPIDSGMIA
FT                 EASRSDDFLQKIKEFMLNGWPERVEKRFADVFANQENLELLDDCLLYKDRV
FT                 IIPLLYQKQILELLHGNHACSVKMKQLARLMVYWFGINKDIEQYVASCVAC
FT                 NSMSIPHKTEEVSKWTPTTRPFSRIHIDFFFFEHRSYLLIVDSFSKWIEVE
FT                 WMKQGTDCNKVLKRLVAFMARFGLPDVLVSDNGPPFTSYEFVSFLERQGIK
FT                 VMKSPPYHPSSNGQAERLVRTVKEVLKRFLLEPDVAKLDLEDQINLFLINF
FT                 RNNNLTSDGHFQSERIFPYIPKTLLGLVNPKNHYKKQLAVPQPDDESIEQE
FT                 LGGEIPRHSNDALDNLTVGEEVWYRTNNPHSRARWIKATFSKKYSQNIFQI
FT                 HVGSVSVMAHRRQLKVCKECLDWSLPNVVIRRLEDDGLPDLEAVVTAEDCE
FT                 EELDDNRGTGKPTPKGEIRKTMNRKRKLPSMADPEAEGLRRSKRTRKKNLD
FT                 NEFLYKF"
XX
SQ   Sequence 5152 BP; 1638 A; 856 C; 1168 G; 1490 T; 0 other;
     gtgtcgacgg ggaaaatcgg gtgcgtgcga aaaagtggta tcccacacac aacagcagca        60
     gccggcatta catcggccac catcatattc tgcgtgtcgg cgttttgctg tgcaattccg       120
     attcagtgcc agtgaggaag tgaacagtgc ctttcttcta atcctaaaat cttattggca       180
     ttgctagatt ataaaaggat cagttcggtg tgcgcggatt ccgtcagtgg taaaccgcta       240
     gtggttttat cacccgtaca gcttctggac gaattcagga cgggaagtgc atgatccaga       300
     tcaattccct aacggccagt tcgaacaact cactcattgg aatcccgcaa gttccggaga       360
     gcggagatta ctgttgcaag gctcggtcag aggaagtacc tagagcggga cagttcggct       420
     aaagttcagc catcaggacg ggaagtgatt tggtgagtca ttttcttttt ttctatattg       480
     aaagttaaat cctttgtgtt gtgaggacac agttgtatcc tttgtgttac ggggacattt       540
     tggccatttt caaaggattt tgattttgtt aactgaggta ttgttttttt tttcttcttt       600
     tttcctcttt ttgtgttgaa tccttttgaa tcattgtgac aatttttgct attttgtatt       660
     gttttattga aatttttgtt tgatcaattg gtgtcattgt ttttgaattt tattatcgac       720
     aattaccttt ataaaaaaaa gagagaaaaa gagcttcgca gaatgagtgc taacatggct       780
     tttaccaccg agccttatcg gcgtggtgct tcctttaccg attggttcac ccgattgaag       840
     tacttcttca aggtgaacaa cgttaaggaa gaggataaga tggcatattt cgtaacgttg       900
     agtggaccat ccatgtttgc cgaaataaaa ctgctttatc cggcaggtaa ttttgaagaa       960
     gtggcatttg aggatttaat tgctaaactc aaaagtcgtt tagacaaaat agaacctgat      1020
     ctagtacaac gctacaagtt cagctctagg gtacaaaatc cgggtgaaac caccgaggat      1080
     tttgtgttgg cactgaaact tcaagccgaa ttctgtgggt ttgacaatta taaggagatc      1140
     gctatactag atcgccttat agtaggcatt aatgataaaa atttaaggca acgtctctta      1200
     ggagaagaaa aactgtcttt ggcaaatgct gagaaaatta tagcaacttg ggaaatagca      1260
     aaggctaacg caggtgcagt ggatgaggga ccaaatggaa atactggatt cgttgctgca      1320
     attcggaatg gttcagaacg tgttggaata gcctacggaa aacttaacag gactttcgat      1380
     ttagcaaaga ggtatcaaga ggaggaagca ttaaggggaa ccggaagcgg ccgaggtcca      1440
     gtgaaaagcc gtctgggaat gagatcatat gacgaaggac accattcaag aggtaaacga      1500
     cattacggta caaagacggt tcatttccgg caggatggag gatttcaaaa gagacaaagg      1560
     ccggactatt cgcaaatggt gtgcaatttc tgcggaatga aagggcacat caagaaaaaa      1620
     tgttttaaac tgaagaatct agagcgagat gccgttaatc ttgttgattc ttacagacct      1680
     ggtccttctg ccgacaggca cattaatgaa ctgatggagc gaatgaggac agtagattcg      1740
     gaagatgagg agagtgacac aggtgaattg cactgtatgt tggtatcgtc cattaataag      1800
     attagcaacc cttgtttgat caaagtcaaa gttgaaggta aagacctcga aatggaagtt      1860
     gattgtggtt cttccgtttc agtaatcagt aaaagcagat atatgtctga ttttgacatt      1920
     cccctacgca aatatagtaa acaattgatt gtggtaaatg gagcgaaact taaaattgaa      1980
     ggggaggcaa cggtctcagt caaatttaaa aataaaatga agttgcttca gttgttggtt      2040
     ctcgattgtg aaaatgactt ttatccattg tttggtcgca cctggttgga tgttttttgc      2100
     cctgattgga ggcaattttt ttcagaatcc ttagaagtaa ataatgtaaa agacgaagcc      2160
     gctaattgcg atgtagatta cataaagaaa cgctttagta atgtttttgt taaaaacttt      2220
     gggcagccaa taagtgggtt taaagcggaa ttagttttga gagacgagac gcctattttc      2280
     aagaaggctt atgaagttcc ttacagattg agggacaagg tttccgctta tttggataaa      2340
     ctggaaaagg aaaatgtaat cacacccatt gatagaagcg aatgggcttc tcctatcatt      2400
     atagttatga aaaagaacaa cgaaattcga ttagttatag actgcaaggt atctatcaat      2460
     aaatcaatag ttccaaacac atacccattg cccacagcgc aagacgtttt tgcaaatttg      2520
     tctggctgta gagtgttttg tgctctcgat ttggaggggg cttatacgca attggagtta      2580
     tcggaaaggt ccagaagatt cgtagtcatt aataccatga aaggattata tgtatataac      2640
     aggcttccac agggcgcctc ttcaagtgcg tctatatttc agcaagtaat ggataaagtt      2700
     ttgcaaggaa tcgatcatgt ttcagtatat ttagacgacg ttttgattgc aggaagaaac      2760
     ctagaggagt gcaaggtcaa acttttaatg gtcctggaga gattggcaaa agctggcata      2820
     aaggttaatt ttggaaaatg taattttttt gtatcggaac tcacccattt agggcacgtg      2880
     ataagtgaaa aaggactaag gccatgcaat gacaaaatat taacaattga gaaggcaaag      2940
     gctccgaaaa atgaatcaga gctaaaatcc ttccttggac tgcttaatta ttatcataaa      3000
     tttataccac atttgtcatc taagctttac catttgtata atttacttaa gaacaacgta      3060
     aagtatgtat gggatgaaaa ctgccaaaaa gcatttgaag aaagtaaaac cttgcttatg      3120
     aatactcaat ttttggaatt ttacgaccct cgaaaagata tcgtggtaat atcggatgct      3180
     tctagttatg gactaggggg attgattgca catgtgatag gaggcgttga gaaaccaatt      3240
     agtttcacat cgttttcact gaatgaagca caaaaaaaat atcctatttt acacctagag      3300
     gccttagctt tagtctgcac gataaaaaaa tttcataaat atttgtatgg acaacgtttt      3360
     acagtgtaca ctgaccataa acctttagta ggcatttttg gcaaagaagg gaaaaactct      3420
     atatatgtaa ctagacttca acggttcatt ttagatttgt cgatttatga atttgatatt      3480
     gtatatagac cagcaaacaa attggggaat gccgattttt gttcgagatt tccactgcag      3540
     caggaagttc ctgaggaatt ggatgcggaa gtaataaaaa gtttaaattt cagtgaaaac      3600
     ttaccaattg attcaggaat gattgcagaa gcatccagaa gcgatgattt tttgcagaaa      3660
     attaaagagt ttatgctaaa tggctggcct gaaagggtgg aaaaacgttt cgctgatgtt      3720
     tttgcaaatc aagaaaattt ggaacttttg gatgattgtc tactttacaa agacagagta      3780
     ataattccat tattatacca aaaacagata ctggagcttc tgcacggaaa tcatgcgtgc      3840
     tcagtaaaaa tgaagcaact tgccaggctt atggtctact ggtttggaat taataaagat      3900
     atagaacaat acgttgcaag ctgcgttgcg tgcaatagta tgagcattcc tcacaagaca      3960
     gaagaggtgt ctaaatggac tcccacgact agacccttca gtagaattca tatagatttt      4020
     ttcttttttg agcatcgttc ttacctgctg attgtcgata gtttctccaa atggattgag      4080
     gttgaatgga tgaaacaagg tacagattgt aataaagttt tgaagagatt agttgcattt      4140
     atggcaagat ttggtcttcc ggatgtttta gtatcggaca atggtcctcc atttacgtca      4200
     tatgagtttg tcagcttcct tgagagacag ggaatcaagg ttatgaaaag tccaccctac      4260
     cacccttcta gcaatggtca agcagaaaga ctggtcagaa ccgtaaaaga ggttttgaag      4320
     agattcttgt tggaaccgga cgtagcaaaa ttagacctcg aggaccagat aaacttattt      4380
     ttgattaatt ttagaaacaa caacttaacg agtgatggtc attttcaatc tgagagaata      4440
     tttccttata tacctaagac gcttttgggt ctagtcaacc ctaaaaatca ttataaaaaa      4500
     cagctcgctg taccacaacc ggatgatgaa agcatcgaac aagagttggg cggggaaatc      4560
     ccgaggcatt caaatgatgc gcttgataat ctgacggtgg gggaagaagt gtggtacaga      4620
     accaacaacc cccacagtcg ggcaagatgg atcaaagcaa cttttagtaa aaaatattct      4680
     caaaatattt tccagattca tgttggaagc gtcagcgtaa tggcacaccg tagacagcta      4740
     aaggtttgca aggaatgtct ggattggtcc ctacccaacg ttgttataag aagactagaa      4800
     gatgacggac tgcctgatct cgaagcagta gtgaccgcag aagattgcga ggaggagctc      4860
     gacgacaacc gaggaactgg gaaaccaact ccaaagggag aaattcgtaa aacaatgaac      4920
     agaaaaagaa agctaccaag tatggctgat cctgaagcag agggactccg gcgttctaaa      4980
     cgtactagga agaagaattt agataatgag tttctttaca agttctgata aagttaacct      5040
     tcagatcgtt ttttagaatt aaggtttatt gaatttgatt tttttattga atttgaattc      5100
     tatctaagtt ggcaacggcc agatctgatc aactaattaa aaggggaaga ac              5152
//
ID   Gypsy-304_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   10-DEC-2018 (Rel. 24.03, Created)
DT   10-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-304_;
KW   Gypsy-304_AA-I; Gypsy-304_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-269
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-269
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 385-385 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 269 BP; 76 A; 63 C; 56 G; 73 T; 1 other;
     tgtcatgtcc atgacgttca ggcgcaccct gcgcattcga ttcgaactgt caaagttcgg        60
     gtgcattcgt tccacgaccg gttgatccgg tggttacctg maaagaaaga aaagaaaata       120
     aatttagttc actttgtaac ttgaaacaaa tcagacgttt ctctccaagt cttatcacgg       180
     tgtacaaaca gtccgcagtt tctccgcctc gcaattcttc caatcagtgc agttctccag       240
     cagtgtggaa gcagggttaa aatataaaa                                         269
//
ID   Gypsy-305_AA-I repbase;    DNA;    INV; 4370 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-305_;
KW   Gypsy-305_AA-I; Gypsy-305_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4370
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4370
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 433-433 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..4356
FT                 /product="Gypsy-305_AA-I_1p"
FT                 /translation="MAPPGGDSETLMQQIVRQNQQMAEQNARLMVLLERFG
FT                 IQEGSASGRSSSNSEFIIESLASNISEFSYDPDNGQVFDRWYRKYEDLFLK
FT                 DGAKLDDAAKVRLLLRSLSVNVFDRYVNFVLPKHPREFTFEETVKRLKELF
FT                 SIRISLFSKRYQCFQLTKNDADDFVTYAGTVNKFCEDFELNKLTADQFKSL
FT                 IFICGLRSSKDTDIRTRLLSKLETNADDECKLESLIAECQRLQNLKLDTAM
FT                 VEQKQTSVSSVCAIKQKKSQPNSSGPKNKPSGKSTNPKTPCWQCGGMHFVR
FT                 DCSFTNHVCKDCKQTGHKEGYCGCYSAKTSISKKKKNSKVNGVFAINQVSS
FT                 ESRRKFLTVTIDGSEVTLQFDTASDITIISRKLWRKLGSPKLLPTTRAATT
FT                 ASGKPLQLLGELQSSVTFGGVTKIGKLYVANNDLNLFGLEWIDLFGLWNMP
FT                 LSTICNQVHADRSNAIQHYKARFPKVFRQGLGHCTKTKVRLFLKPEAMPVY
FT                 RPKRPVPFTSVEKVDAELDRLQKLDIITPVDFSQWAAPIVVVKKPGGKIRI
FT                 CADYSTGLNAALESNNYPLPVPEDIFSKLNGCKYFSIIDLSDAYLQVEVDD
FT                 NSKNLLTINTHRGLFRFNRLAPGVKSAPGAFQQLMNTMIADLKGVESFLDD
FT                 LMVFSKTEKEHHEILTALFQRLQEYGFILREEKCNLLQHQIKYLAHIVDES
FT                 GLRPDPAKIEAIVKMPPPSDITSLRSFLGAVNFYGKFVSEMHQLRKPLDAL
FT                 LKKDAQFVWSNECQKSFEKFKEVLQSDLLLTHYDPTLEIIVAADASQSGIG
FT                 ACIMHKFPDGSVKAVAHASRSLTDAEKRYGQVEKEGLALVYAVTKFHRMLL
FT                 GRKFTLQTDHQPLLRIFGSKKGIPIHTANRLQRWALTLLCYDFEIKYVSTT
FT                 QFGNADVLSRLISKHSRPEEDFVIASIQLEDDIEVPLQEAVGFLPVTFDMV
FT                 RNSTVKCPVLQQVVSHIENGWPASTKDITDPDVRAFYTHQDALELVKGCVM
FT                 LSSRLVIPETLRKRILKQLHKGHPGMERMKALARSHVYWPKIDESISDYVK
FT                 RCDSCAMHSKTLPKVPLQSWPLAQSPWERIHIDFAGPVNGLHFLVVIDAFS
FT                 KWPEINIVRSPTTAAVINFLDESFARFGIPTTIVSDNGTQFSSVQFATFCK
FT                 KNGVQHLRISPYHPQSNGQAERFVETLKSALLKINKGENISESLQIFLQAY
FT                 RTTPSRVLNGKTPSQLMIGRNMRTVLSLLQPRQPVTPIINHDQNVQFNRKH
FT                 GVVPRKLKAGDTVYAKVYQTNSKWKWASGIIIEAIGQVNYNVLLDDWHGRR
FT                 KLIRSHANQIKHRFDEQTVPRNSTVPSPLSIFVDEFGLQENTENAQQNMVD
FT                 VDASPDSEHNXEITKDDDEENEVQPEIEAPDVNPLESTQRSQPEVQSDEEP
FT                 STSRPKRIIQMPSRLEPFLVFWK"
XX
SQ   Sequence 4370 BP; 1314 A; 1061 C; 955 G; 1036 T; 4 other;
     tttggcgacg aggwtatcaa gaactcaagc tcaagaggaa gaatcatggc accacctggc        60
     ggcgacagcg aaactctgat gcagcagatt gttcggcaga accagcagat ggcagagcaa       120
     aacgcgcgat tgatggtctt gctggagcgc ttcggcattc aagagggctc cgcatccggc       180
     cgatcttcaa gcaactcgga attcattatt gaatctttgg catcgaacat cagcgagttc       240
     tcctacgatc cggacaatgg ccaggttttc gaccggtggt accgcaaata cgaggatctc       300
     ttcctgaagg acggtgcgaa attggacgat gctgcgaaag tacgtttgct cctaagaagc       360
     ctcagcgtca acgttttcga tcgctacgtc aatttcgtcc ttccgaaaca tccccgagag       420
     ttcacattcg aagaaaccgt gaagcgactc aaggaattat tcagcatccg gatttcgctc       480
     ttcagcaaaa ggtaccagtg cttccagctg acgaaaaacg atgcggacga ttttgtcact       540
     tacgcgggga cagtcaacaa gttctgtgaa gatttcgaac tgaacaagtt aaccgcagac       600
     cagttcaaga gtttgatctt catttgcgga cttcgttcct cgaaagacac ggatattcga       660
     acacggctac tctcaaagct cgaaacgaat gcagacgacg aatgcaagct cgaatcgctt       720
     attgcagaat gtcagcgtct tcaaaatctc aaacttgata ccgcgatggt ggaacagaag       780
     caaacatcgg tgagctccgt ctgcgcaatc aaacagaaga agtctcagcc gaattcatct       840
     ggaccgaaaa acaaaccaag cggcaaatca accaatccga agacaccatg ttggcagtgt       900
     ggcggtatgc acttcgttcg tgattgctcg tttaccaacc acgtttgtaa ggactgcaag       960
     caaaccggac acaaagaggg ctactgtggc tgctattcgg cgaagacatc catttcgaag      1020
     aagaagaaaa attccaaggt caacggtgtt ttcgcaatca accaggttag tagcgagtcc      1080
     agacggaagt tcctgactgt gacgatcgat ggctctgaag taacgctgca attcgacacg      1140
     gcttcggaca tcacgattat ctctcggaaa ctctggagaa aactcggatc acccaaacta      1200
     ctacctacca caagggcagc aacaacagcg tctggcaagc ctctccagct tcttggtgaa      1260
     cttcaaagct cagtcacttt tggaggtgtc accaaaattg gaaagcttta cgtggccaac      1320
     aacgacctca acctctttgg tctggaatgg atcgacttgt tcggactttg gaacatgcca      1380
     ttgtcgacga tttgcaatca agttcacgct gataggtcga acgcaataca gcattacaag      1440
     gcaagatttc ccaaagtttt ccggcaaggt cttggacact gcacaaaaac caaggtacgt      1500
     ctgttcctga agcccgaagc tatgccagtc tacagaccga aacgccccgt tccattcacg      1560
     tcagtggaaa aagtcgatgc tgaactggac cgtctacaaa aactggatat tatcactccg      1620
     gttgattttt cacagtgggc tgcaccaatc gttgtggtta agaaaccagg aggaaagata      1680
     cggatctgtg ccgattattc gaccggacta aacgccgccc tggaatcaaa caactaccca      1740
     ttgccagttc cagaagacat tttcagcaag ctgaatggct gcaaatattt cagcataatc      1800
     gatttaagcg acgcttacct gcaagtggaa gtagacgaca actcaaaaaa tttactgaca      1860
     atcaacaccc accgaggact ttttcgattc aaccggctag cacctggggt gaagtccgct      1920
     cctggagcat ttcaacagct tatgaacact atgatcgcag atctcaaggg tgtagaatcg      1980
     ttcctggatg acttgatggt attcagcaag accgaaaagg agcatcatga aattctcact      2040
     gcactctttc aacggctgca agaatatggt ttcattcttc gtgaagaaaa gtgcaatctc      2100
     cttcaacatc aaatcaagta tcttgcacat atcgttgacg aatctggtct acgtccggat      2160
     cctgcgaaaa tagaagctat tgtcaagatg ccccctccaa gtgacatcac cagtcttcga      2220
     tcmttcctcg gtgcagtaaa tttttatggc aagtttgtat cggaaatgca ccaactacga      2280
     aaaccacttg atgcacttct caagaaagat gctcagtttg tctggagcaa cgagtgccag      2340
     aaatctttcg agaaattcaa agaagtactm cagtcagacc ttctactcac ccattacgac      2400
     ccaacattgg aaataatcgt tgcagcagac gcatctcaat caggaattgg agcatgcata      2460
     atgcataaat ttcccgatgg ctctgtcaaa gcagttgccc atgcatcccg ttctcttact      2520
     gatgctgaaa aacgttacgg acaggtagaa aaggaaggcc tagctttggt gtatgcagtc      2580
     acgaagttcc accgaatgct acttggacgt aaattcactc ttcagacgga tcatcagcca      2640
     ctattgagaa tttttggatc aaaaaaggga ataccaatcc acaccgccaa tcgcttacaa      2700
     cgttgggcac tgacgcttct ttgctatgac ttcgagatca aatatgtatc caccacccag      2760
     ttcggaaatg ctgatgttct ttctcgtcta atcagcaagc attcaagacc agaggaagat      2820
     tttgtcattg cttcaatcca gctggaagac gacatcgaag tacctctcca agaagcagtc      2880
     gggttccttc ctgttacgtt tgacatggtt cgcaactcaa cagtcaagtg tcccgtactc      2940
     cagcaagtag tcagccatat cgagaatgga tggccagcca gcaccaaaga catcacagac      3000
     cccgatgttc gagcatttta cactcatcaa gacgcgctag aattggtgaa gggatgtgta      3060
     atgctctcaa gccggttggt gattcctgaa acactacgca aacggatact aaaacagctc      3120
     cacaaaggac atccaggaat ggaaagaatg aaagcgcttg cacgaagtca cgtctactgg      3180
     ccaaaaatcg atgaaagcat ttctgattac gtcaagcgat gcgacagctg tgccatgcac      3240
     tcgaagacac ttccgaaggt tcctctgcaa tcgtggccgc tcgcacagtc tccctgggaa      3300
     cgcattcata tagattttgc tggtccagtt aacggattgc actttttggt agtaatcgac      3360
     gctttttcca aatggccgga aatcaacatt gtacgatcgc caactactgc agcagtaatc      3420
     aatttcctgg atgaatcatt cgctcgtttt ggaattccaa ccaccatcgt ttcggacaac      3480
     ggtacacaat tttcatcggt gcagttcgca acattctgca agaagaatgg agttcaacat      3540
     ttgcgaatat ctccgtacca tccgcagtct aatggccagg ctgaacgttt tgtagaaact      3600
     ttgaagtcag cgttgctcaa aatcaacaag ggggagaata tctctgaatc attgcaaatc      3660
     tttcttcaag cctacagaac aaccccaagt cgtgtcctaa atggtaaaac accatcccag      3720
     ctaatgattg gaagaaacat gcgaacagta ttaagcttac ttcaaccacg acaaccggtg      3780
     acaccaataa tcaatcacga ccagaatgtc caattcaatc ggaagcatgg cgtagtacct      3840
     cggaaactaa aggcaggtga taccgtttat gcaaaggtct accaaaccaa ttcaaaatgg      3900
     aaatgggctt ccggaatcat cattgaagct attggacagg tgaattacaa tgttctactg      3960
     gacgactggc atggcagacg gaaattgatt cgttcacatg ccaatcaaat caagcaccgt      4020
     tttgatgaac aaacggtacc taggaattca acagtaccat ctccattaag catatttgtg      4080
     gatgaatttg gattacaaga gaataccgaa aacgctcaac aaaatatggt cgatgttgac      4140
     gcttctccag attctgaaca caatcmagaa attacaaagg atgatgatga ggaaaatgaa      4200
     gttcaacccg agattgaagc tcctgatgtt aaccctctgg aatcaacaca gcggtcccag      4260
     ccagaagtac aatctgatga ggaaccctcc acaagccgtc ccaaacgtat aattcagatg      4320
     ccatccagat tagagccttt cctggtattc tggaaataag aagggaggaa                 4370
//
ID   Gypsy-305_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-305_;
KW   Gypsy-305_AA-I; Gypsy-305_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 386-386 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 201 BP; 68 A; 46 C; 35 G; 51 T; 1 other;
     tgttgtagac taacatagta gtcgacgacc aagtcggaga atcgtagtag tcaactacca        60
     agccagtgtt gtttgggtaa ccactcgaac ttgccttagc aaccactagc aacctgacaa       120
     tataaaaggc gaacaatatt gctactccgt cattctgtac ttaccattcg awcaataaac       180
     atctagttta aaagtacaac a                                                 201
//
ID   Gypsy-306_AA-I repbase;    DNA;    INV; 5102 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-306_;
KW   Gypsy-306_AA-I; Gypsy-306_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5102
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5102
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 434-434 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           701..4945
FT                 /product="Gypsy-306_AA-I_1p"
FT                 /translation="MALNGIATMIEPYRKGSSFCDWVKRLAYCFEANEVTD
FT                 EMKKAHLITLGGPVMYSELKLLYPNGALATAVYADIVAKLKARLDKIEPDV
FT                 IQRAQFNSRIRQNGETLEDFVLALKLQAEFCGFGDFKNMAIRDRIVAGVND
FT                 KALQQRLLNEENLTLESAEKIITTWQIAESNAKALGNRENSWDQIASLKMA
FT                 DPNTVGAAMGKIARTFEFAKQGEHSRGPVKSRLGHRQWTERHGHFERRRDE
FT                 WGRPRPLQLEKWRNQEYRRPSRFANFTCDYCGIKGHIKKRCFKLKNLKRNA
FT                 VNMVQNLNPIPTVDEDLQELIRMTANDSDSEDDDMDEGENGSEEFECMNIT
FT                 SINNINNPCLLDLFIEDKLLSMEIDCGSAVTVINKRQYFSIIDKPLKRCNK
FT                 NLAVVNGSKLDVLGEVIVSVKLRGKEANLKLLVLDCSNNFIPLLGRSWLDV
FT                 LFPNWRNFFSNHTLINNLMNENKEAVINDLKQQFSKVFVKDFSTPIVGFKA
FT                 DLVLRTEVPIFKKAYDVPYRLKQKVDDYLDKLENQRVITPIKTSEWASPVI
FT                 VVIKKNDQIRLVIDCKVSINKMMIPNTYPLPTAQDLFAKLAGSKMFCALDL
FT                 EGAYTQLELTDRSKQFMVINTTKGLYTYNRLPQGATSSAAIFQQIMDQVLH
FT                 GIEGVYVYLDDVLISGKSFEDCASKLREVLSRLSKTNIKINLDKCKFFVNE
FT                 LDYLGHVISEQGLKPCPDKISTIKNANVPQNVTELKSFLGLINYYHKFIPN
FT                 LSAKLYHLYNLLKKDVKFVWDSKCNKAFNDSKNALLETDLLEFYDPNKPIV
FT                 VVSDASGYGLGGVIAHIVDGIEKPVSFTSFSLDKCQKSYPILHLEALALVC
FT                 TIKKFHKYLYGKKFLVFTDHKPLVGIFGKEGKNSIFVTRIQRYVLDLSIYD
FT                 FEIRYRPSAKMGNADFCSRFPLPQLIPNEIHTDFVRSINFSKNIPLDYVKV
FT                 ANATKNDEFLLKVISYMKNGWPDRIDKHFFNVFANHHDIEIIDDCLLYQDR
FT                 VVIPKELQKPVLNLLHGNHSGIVKMKRLARQSVYWFGINSQIEEFVKECEV
FT                 CNSMAVVSKRKVESEWIPTTRPFSRIHVDFFHFSSHTFLLIVDSYSKWVEI
FT                 EWMKTGTECGKVLKKLVAFFARFGLPDVLVSDGGPPFNSFAFVCFLENQGI
FT                 KVFKSPPYHPASNGQAERFVRTVKDVLKKFLLEPEFLNLELEDQINLFLIN
FT                 YRNNSISADGHFPSEKVFAYIPKTLIDLLNPKKHFKKLLLKPAKTFNDDNQ
FT                 LEVVSKLKRKDPLDDLMEGDAIWYQNHKPGHLAKWVKAIYLKQISQNLFQV
FT                 LIGSVVVTAHRAQIRTTGVTRGEIRPNVVVSKQKSMNVDERPRDQVSDPVD
FT                 FEMNECNSDKYHQKEENSSKKRKKPANWVDEPLRRSKRERKAKRDNAFVYT
FT                 K"
XX
SQ   Sequence 5102 BP; 1688 A; 883 C; 1061 G; 1470 T; 0 other;
     acttgacgac gaggcaaccg gacatcaacg cacaagtgct gtaagtaaaa gctgtcagtc        60
     agtgttccag ctcagttaga gtgcggtcgg cttacagaac ggtgcgaatc aagcgtgcga       120
     tcggcaaaca gcggcagaaa gaaatacgga gttggtctgg tggcgtaaaa aaatcctacg       180
     agtgtctatc ggagtccgaa aagttcgagg ggttcgtgaa atcctttccg ttccacatag       240
     gattggcaac gctagagggc cggcgatcac aatccggttt atgtgcatag tgaaaaccat       300
     agcgtcaacg cagattcagt gaaattcgac acacccggca aagtgatcgg tgctcgctat       360
     agcgtcgttg cgaggggcat cgctaagaat aatcagccaa gcaacaaacg aggtcatcgt       420
     acttcactgg atcaacgacc gaccgacgta acagtgtgtg agtgaacagt aatctggtga       480
     gtttttacga ttttttttcc ttgccaatct aacggaattc ttattggaat tttatatttt       540
     gattctttac tgcacgtatc ggcaaactga ttgaaaaaca cccatttttc acaatatttt       600
     tcgctgcctt tttctttgta atttttttca acccgtggat tattgtttgg ctcttttaaa       660
     actatttcta tacatctcaa tagaatttga ttttgagaca atggcattaa atggaattgc       720
     tacaatgatt gaaccatata gaaagggctc atcgttttgt gactgggtaa agcgacttgc       780
     ctattgcttt gaagctaacg aggttaccga tgaaatgaaa aaggcacact tgataacatt       840
     aggaggacca gttatgtatt cagaactcaa attattatat ccaaatggtg ccttggctac       900
     tgctgtctat gcggacatcg tagcaaagtt gaaagctaga cttgataaaa ttgagcccga       960
     tgtgatacaa cgtgctcaat tcaattctcg gatcaggcaa aatggagaaa ctttagaaga      1020
     tttcgtatta gcccttaaac tccaagccga gttttgcggt tttggcgatt ttaagaacat      1080
     ggcgatacga gatcgcattg tagctggtgt aaatgacaag gccctccaac aaaggctact      1140
     caatgaagaa aacctgacgt tggagtcggc tgaaaagatt attacgacgt ggcaaattgc      1200
     cgaaagcaat gccaaagcat tgggaaacag ggaaaacagc tgggatcaaa ttgcctcttt      1260
     gaaaatggca gaccccaaca cagttggagc cgccatggga aaaatagctc gtacttttga      1320
     atttgcaaag caaggtgagc actctagagg tcctgttaaa agccgtttag gtcacagaca      1380
     atggacggag cgtcatggac attttgagcg acggcgtgat gaatggggta gacctaggcc      1440
     gctgcagcta gaaaaatggc gaaaccagga atacagaagg ccatcacggt ttgctaactt      1500
     cacgtgtgac tactgcggaa ttaaggggca tattaaaaaa cgctgcttca aactgaagaa      1560
     tttgaaaaga aatgccgtca acatggtgca gaacctgaac cctattccaa cggtagatga      1620
     ggacctgcag gagctcatta ggatgactgc aaatgattca gattccgaag acgacgatat      1680
     ggacgaaggt gagaacggta gtgaagaatt tgaatgcatg aacatcacct ctattaacaa      1740
     cattaataat ccctgtttgt tagacttatt tattgaggat aaattactta gcatggagat      1800
     agattgtggg tctgctgtga ctgtgataaa caagcgacaa tatttttcta taattgacaa      1860
     acctttgaag agatgcaata aaaacttagc agttgttaat ggttcaaaat tagatgtgct      1920
     cggagaagtg attgtttcgg tcaaattgag agggaaagaa gcaaatttga agcttttagt      1980
     actcgattgt agcaataatt tcattccact tttgggccgt tcttggttgg acgttttgtt      2040
     cccaaactgg cgaaattttt tctcgaatca taccttgata aacaatttga tgaacgaaaa      2100
     caaagaagca gtgattaatg atttgaaaca acagttttct aaagtttttg ttaaggattt      2160
     ttcaacacct atagtaggtt tcaaagctga cttagttttg agaaccgaag ttcctatttt      2220
     caaaaaagcg tacgatgtac catacagatt gaaacaaaaa gttgacgatt acttggataa      2280
     gttagaaaat cagcgagtga taactccaat aaaaactagt gagtgggctt ctccagtgat      2340
     agttgttata aagaagaacg atcaaattag acttgtgata gattgcaaag tatcgattaa      2400
     caaaatgatg atacctaaca cttacccact tccaacggca caggatttgt ttgcaaaatt      2460
     agcggggagt aaaatgtttt gtgcccttga tctggaaggc gcttataccc agttagagtt      2520
     aacagatcgt tcaaaacagt ttatggtaat taatacaact aaagggttgt acacatataa      2580
     tcgactacca caaggtgcaa catcaagcgc tgctatattt caacaaataa tggatcaagt      2640
     tttgcatggt attgaggggg tttacgttta cttggatgac gtgctgattt ccggaaaaag      2700
     ctttgaagat tgtgcttcca aattacgtga agttttatca agattatcta aaactaatat      2760
     taagataaat ttagacaaat gcaagttttt tgtaaacgaa ttagattacc ttggccatgt      2820
     aataagtgaa cagggcttaa agccatgtcc cgacaaaatt tctacaatca aaaacgcaaa      2880
     tgtgccacaa aatgtaaccg agttgaaatc ttttttgggt ttgattaatt attatcacaa      2940
     atttataccc aatctctcag ctaaactgta tcacttgtac aatctattga aaaaagatgt      3000
     gaaatttgtc tgggacagta aatgcaataa agcctttaat gattctaaga atgcactttt      3060
     ggaaaccgat cttcttgaat tttatgatcc aaacaaacct atagttgttg tgtctgacgc      3120
     ttcggggtat ggtcttggag gagtcattgc ccacatagta gacggtattg aaaaaccagt      3180
     aagttttact tcattttctc ttgataaatg tcaaaaatcg taccctattt tacatctgga      3240
     ggctcttgct ttagtttgca caataaaaaa atttcataaa tacctttatg gaaaaaaatt      3300
     cctagttttc acagaccata agccacttgt agggattttc ggcaaagagg gaaaaaattc      3360
     aatttttgtt acgcgaattc aaagatatgt tttagattta tctatttacg acttcgaaat      3420
     tcgctatagg ccttctgcca aaatgggtaa tgcagatttc tgctcccgtt ttcctttgcc      3480
     tcaattgatt cctaatgaaa tacacacaga ctttgtcaga agcattaatt tcagtaaaaa      3540
     tattccgtta gattatgtta aagttgccaa tgcaaccaag aatgatgaat ttttactcaa      3600
     agtgatttct tacatgaaga atggctggcc tgacagaata gacaaacatt ttttcaacgt      3660
     ttttgctaat catcacgata tagagataat tgatgactgc ttattgtatc aggaccgtgt      3720
     ggtaattcca aaagagttac aaaaaccagt tttgaatctt ttgcatggga accattcagg      3780
     aattgttaaa atgaaaagac tggccagaca atccgtttat tggttcggta tcaattcaca      3840
     gatagaagaa tttgtaaaag aatgtgaagt gtgtaatagt atggcagttg tttctaaacg      3900
     aaaagtagaa tctgaatgga ttcctactac aaggcctttc agtaggattc atgtggactt      3960
     tttccatttc tccagtcaca catttttatt gatagttgac agctactcaa agtgggtgga      4020
     aatagaatgg atgaaaactg gtactgagtg tggaaaagtc ctcaagaaat tggtagcctt      4080
     ttttgccagg ttcggtctcc cggacgtgtt agtttccgac ggaggtcctc cattcaactc      4140
     atttgcattt gtttgtttct tagaaaatca aggaattaaa gttttcaaaa gccctccata      4200
     ccatccagcc agcaatggtc aagcggaacg gtttgtgaga acggtaaaag atgtattgaa      4260
     aaaattctta ttggaaccag agttcctaaa tcttgaactg gaggatcaga ttaatttatt      4320
     tttaatcaat tacagaaata attctatatc ggcagatgga cattttccat ccgaaaaagt      4380
     gtttgcatat ataccaaaaa cattaattga ccttttaaac ccaaaaaagc attttaaaaa      4440
     actattacta aaaccagcta aaactttcaa tgacgataat caactagagg tcgtttccaa      4500
     gttgaaacga aaagatcctt tagatgatct gatggaaggc gatgctattt ggtatcagaa      4560
     tcataagcct ggccatctag ccaaatgggt taaggcaatt tacttaaaac aaatctctca      4620
     aaacttattc caggtgctaa ttggaagcgt tgtggtcacg gcacacaggg cacagattag      4680
     gactactgga gtaacgcgag gagagataag gccgaacgtg gtggtatcca agcaaaaatc      4740
     tatgaacgtg gacgagaggc cgagagatca agtttccgac cctgtagatt ttgaaatgaa      4800
     tgagtgcaat agtgataaat accaccagaa agaagaaaat tcttctaaga aaaggaaaaa      4860
     acctgccaac tgggtggacg aaccacttcg gcgttcgaaa agagaaagaa aagcaaaaag      4920
     agataatgca tttgtgtaca ctaagtgagg taaataccct atcagaatga atatttaaga      4980
     aaaaaacatt tccatcgaat tcacaataat ttcaaatttt ttgtcaagta aaaacagatc      5040
     agaattattt tatttttatt ttttcaatac taggataaga aatatctaaa aggtgaagga      5100
     gt                                                                     5102
//
ID   Gypsy-306_AA-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-306_;
KW   Gypsy-306_AA-I; Gypsy-306_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-298
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-298
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 387-387 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 298 BP; 92 A; 58 C; 49 G; 99 T; 0 other;
     tgtaatgtaa tgacttcatc gaatagaatt cgttcagtgt agcttgctat aaattatgta        60
     aacctctgat caccaataca atcaatcaga tatcaaatgt gaaattaata acgccttgta       120
     tcgatcatga aaactataaa agataaaagc tgccatcgga gtggtctctt ttggctttca       180
     gctatcaagt acttaaagtg ttttaatcga gtctaagaaa gacaattaat cttggttcac       240
     ccttactcta ctctgctgct ttcgtctact gctgtttgtt ccccggtcgg atactaaa         298
//
ID   Gypsy-307_AA-I repbase;    DNA;    INV; 4593 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-307_;
KW   Gypsy-307_AA-I; Gypsy-307_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4593
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4593
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 435-435 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..4558
FT                 /product="Gypsy-307_AA-I_1p"
FT                 /translation="MDPNQFKAFMEHQAQMMTQLMQGLNATAATIAARAAT
FT                 QIPATPQVPQMPLPSPLVLEGDMTENMDFFEKSWNNYVKATKMDSWPAIDN
FT                 QQKVSILLSVIGEPARKKFFNFELTEAQRNDPDAALTAIRDKVTPKRNVIL
FT                 DRLEFFSATQFSRESTDDFATRLKILAHGAKLGNLMDELVTYKLVTANKWP
FT                 QIRSKMLAIPDITIDKAVDMCRAEEITTKRCQDLAIQSMDSKSESEIKKVR
FT                 KSKSRPKPKTLHCKFCGDQHEFSKGVCPALGKRCNRCKGRNHFERVCKAKR
FT                 KSYRGTRRVKEIKDDSSESEESSASQDDASSEDSEPEYEIGKIFDCSERGG
FT                 CVVAELELKFCEKWKKIKCELDTGANTSLIGQNYLVKQDKEENLVMLPSKL
FT                 RLQSFGGSPIKVLGQVKVPCRRKGRKYSLVLQVVEGDHCPLLSAKASRVLG
FT                 FVKFCKSVTFGGPNPAVSSENLLKVYRVHAQKIVDTHKELFTGYGKLVGEV
FT                 SLEVDNSISPSIQTPRRVPIALRSKLKAELEMLEREEIIVKETTHTDWVSN
FT                 ILIVQRGDPAKQSIRVCLDPVPLNKALKRPNLQFVTIDEILPELGKAKVFS
FT                 TVDAKKGFWHVVLDEASSKLTTFWTPFGRYRWTRLPFGIAPAPEIFQMKLQ
FT                 ETIQDLEGVECIADDILIFGIGDSLEEALSNHNLCLEKLLCRLEKHNVKLN
FT                 REKLKLCQTSVKFYGHILTDKGLQPDESKIATIRNYPTPTDRKEVHRFIGM
FT                 VNYLSRFIPNLSANLTNMRKLISESQPWKWTPTEAAEFHRVKSLVSDIGTL
FT                 QYYDVNQPITIECDASCFGLGAVVYQSSGVIAYASRTLTATERNYAQIEKE
FT                 LLAILFACIRFDQLIVGNPKAVIKTDHKPLLNIFEKPLLSAPRRLQHMLLS
FT                 LQRYNLSMEFVTGKENVVADALSRAPIADDQPTDRYKKLCIYKIFREIEDV
FT                 ELNQYLSISDSRLSEIMDETAKDPTMQQIIDYVNHGWPHSITRVPDNVKIY
FT                 YSYRDELATQSGIVFRGDRIVVPYALRRKLIDCCHVSHNGIEATLKLARAN
FT                 LFWPGMNSQIKEVVKSCNVCAKFSASQANPPMKSHIIPIHPFQLISMDVFF
FT                 AEYEGRKRALLVTVDHYSDFFEVNILRDLTPHSVISACQQNFARHGTPQRV
FT                 LTDNATNFVNRPMVEFAKHWDFELVTSAPYHQQANGKSEAAVKIAKRLLVK
FT                 ATETGTNFWYALLHWRNIPNKIGSSPSARLFSRSTRCSVPRSVANLLPKIV
FT                 KDVPESIEENRRKVKHRYDQKTRHLPDMETGSPVFVQLSPDTSKIWTPGTI
FT                 SKRLNDRSYCVAAKGKEYRRSLVHIKPRIEETAPSARTAITPKDNEGIVPR
FT                 EPRTVMGQRTNNNIDDEVSSEVPNTICSPPALSPSSLSVSPSLSALSTSTV
FT                 KPTESRIPSISDKVTRPKRVIKIPEKLKDYDLN"
XX
SQ   Sequence 4593 BP; 1384 A; 1017 C; 1060 G; 1132 T; 0 other;
     tggtgtcaga agtaaacctg gactactgtt gtgttttccg gcgtcattga tatcgcggat        60
     aacgttttca atgtagaaaa ccggacagaa gtggtcacga tagtttaccg tgagccgcca       120
     ttttgtttcc cgggtgatcg ttcgagaagt gttcacgtcg gtaaaaagtg ccgccattgc       180
     tattttccga gtgtgattca gtgtaaatcc tcatgaaatg gatccaaacc agttcaaagc       240
     gttcatggag catcaggctc aaatgatgac gcagttgatg caaggattaa atgcgactgc       300
     cgctacgata gcggcacggg ctgccacgca gattccagcc acaccacagg tgccacaaat       360
     gcctctacct tcaccgctcg tattggaagg cgacatgacc gaaaacatgg attttttcga       420
     aaaaagctgg aacaattatg tgaaagctac aaagatggac tcgtggcccg ccatcgacaa       480
     tcagcagaaa gtcagcattc ttctttctgt gattggggaa ccagcccgaa aaaagttctt       540
     taacttcgag ctcactgagg ctcagcgtaa tgatccagat gcagctttaa cagcaattcg       600
     agacaaagta acaccgaaac gaaacgttat tttggatcga ctggaatttt ttagtgccac       660
     tcagttttcc cgtgagtcta ccgacgattt tgcaacccgt ctgaagatac tagctcatgg       720
     tgctaaacta ggtaacctaa tggatgaact cgttacctac aaactcgtta cagccaataa       780
     atggccacag attcgttcca aaatgttggc tataccagac atcaccattg acaaagcagt       840
     cgacatgtgt agagcggagg aaatcaccac caaacgatgt caggatctgg caatccaatc       900
     tatggattca aaatccgaat ctgagattaa gaaagtcaga aaaagcaaat ccaggcccaa       960
     gccgaagacg ctccattgca aattctgtgg tgatcagcac gagttctcga aaggtgtttg      1020
     tcctgccctt ggtaaaaggt gtaatcgatg taagggaaga aatcattttg agcgagtgtg      1080
     caaagccaaa cgtaaatcgt acagaggcac cagaagagtc aaggagatta aagacgacag      1140
     cagtgagtct gaggagtcat ctgcttccca agacgacgca tcatctgaag atagtgagcc      1200
     ggaatatgag atcggaaaaa ttttcgactg ttccgagcgt ggaggatgtg ttgttgctga      1260
     gttggagtta aagttctgtg aaaagtggaa gaaaatcaag tgtgaactgg acactggtgc      1320
     caacaccagt ctcataggac aaaactatct agtgaaacaa gataaagaag aaaatctcgt      1380
     gatgcttcca tcaaagctac gtttgcagag ctttggtgga agtcctatca aagtgctagg      1440
     gcaagtaaaa gtaccctgtc ggcgtaaagg aagaaaatac agtttggtac tgcaggtggt      1500
     agaaggagac cattgtccac tactgtctgc aaaagcatcc agagtactcg gattcgtcaa      1560
     attctgcaag tcagtcacat ttggtggacc aaatccagct gtatcatcgg aaaacctgct      1620
     aaaagtttac cgtgttcacg ctcaaaagat tgtggacacc cacaaggaat tgttcacggg      1680
     atatggaaaa ctggtcggcg aagtatcctt ggaggtcgac aattcaattt ccccatcaat      1740
     tcaaactcct cgtcgagttc cgatcgcatt acgcagcaag ttaaaggcgg agcttgaaat      1800
     gctggaaaga gaagaaatca tcgtaaagga aacaactcat actgactggg ttagcaacat      1860
     tctcattgtg cagcgtggtg atcctgctaa gcagagtatt cgtgtttgct tggacccagt      1920
     tccgttgaac aaggcgttga agaggccgaa cttgcagttt gtcaccattg atgaaattct      1980
     tccagagctg ggcaaggcga aagttttttc aacggtagat gccaagaaag gattttggca      2040
     tgttgtcttg gatgaagcga gcagtaaact aacaacgttc tggacgcctt tcgggcgata      2100
     ccgctggacc cggctaccat ttggtattgc accggcaccc gaaatattcc agatgaagct      2160
     ccaagaaacc atacaggacc tcgaaggtgt tgaatgcata gcagatgata ttctgatttt      2220
     cggcatagga gattcactgg aggaagcttt atccaaccac aatttgtgcc tagaaaaatt      2280
     attatgcagg ttggaaaaac acaacgtaaa gttgaatcgt gaaaagctta aactatgtca      2340
     gacttcagtg aagttctacg gacacatcct aacggataag ggtcttcaac cggatgagag      2400
     caaaattgcg actattcgta actacccgac acctacagac cgcaaagaag tacatcgttt      2460
     catcggcatg gtgaattatc tcagcagatt tatcccgaat ctgagtgcaa atcttaccaa      2520
     catgcgaaag ctcatctcag aatcccagcc gtggaaatgg acaccaacag aagcagcaga      2580
     gtttcatcga gtcaaatctt tggtatcgga tattgggacg ctccagtatt atgacgtaaa      2640
     ccagccaatt accatcgaat gtgatgccag ctgttttggt ttgggagctg ttgtgtacca      2700
     aagtagcgga gttatagcat atgcttctcg aaccctgact gcgacggaac gtaactacgc      2760
     ccaaattgaa aaggagttgc tggctattct gtttgcgtgc atccgttttg atcaactaat      2820
     cgttggaaat ccaaaagcag tcattaagac cgaccacaag ccgctgctca atattttcga      2880
     aaagcctctg ctttctgcac cacgcagact acaacacatg ctacttagcc ttcagcggta      2940
     caacctttca atggaatttg ttactggaaa ggaaaatgtc gtcgctgatg cgttgtcgcg      3000
     agcacctata gcagatgacc aacccacgga tcgatacaaa aagttgtgca tctacaagat      3060
     cttcagggag attgaagacg tggagctgaa tcagtattta agcatctcag atagtcgatt      3120
     gagcgaaata atggacgaga cagctaaaga tccaacaatg cagcagatca tcgattatgt      3180
     gaatcatggt tggccacatt caatcactcg agtgcccgat aacgtgaaaa tttactacag      3240
     ctatcgtgat gagttggcta cccaaagtgg aatcgttttc agaggtgacc gaatagtagt      3300
     accgtatgca cttcgtcgta aattaattga ttgctgtcat gtaagccata acggcataga      3360
     agctactctc aagctggccc gggcaaacct gttttggccc ggcatgaact cgcaaataaa      3420
     ggaagtagtg aaaagctgca acgtgtgcgc aaagttttcc gcatcgcaag ctaacccacc      3480
     catgaaaagc catatcattc cgatccatcc gttccagctg atatccatgg acgtgttctt      3540
     tgcagaatat gaaggacgca agcgagccct tttagtcact gtggatcatt attccgattt      3600
     ttttgaggtg aacatcctac gcgatctaac gcctcattcc gtcatatcag catgccaaca      3660
     aaactttgct cgtcacggaa caccacagcg agttttgacg gacaatgcta cgaatttcgt      3720
     taatcgtccg atggtcgagt tcgctaaaca ttgggatttt gaattagtga cttcagcgcc      3780
     gtaccaccag caagcaaatg gaaaatcaga agccgccgtc aaaatagcaa aacgtttgct      3840
     agtaaaagct actgaaaccg gaactaattt ctggtatgct ttgctacatt ggagaaatat      3900
     tcccaacaag attggttcga gtccgtctgc ccgtttattt tcccgctcaa cacgttgcag      3960
     tgtcccacgt tctgtcgcta atttgctgcc gaaaattgtt aaagatgtcc ctgaaagtat      4020
     cgaagaaaac cgaaggaagg tgaaacacag gtacgatcag aaaacgcgcc acttaccaga      4080
     tatggaaacc ggttctcctg tcttcgtgca gcttagtcca gacacatcca agatttggac      4140
     tccaggtact atttcgaagc ggttgaatga cagatcctac tgtgttgcag caaaagggaa      4200
     ggaatatcgc cgtagccttg tacacataaa gccacgaatt gaagaaaccg ctccatccgc      4260
     tcgtactgca atcactccca aggacaacga aggaattgtg ccaagagaac cgcgaactgt      4320
     tatgggtcag cgaacaaaca acaacattga cgacgaagtt tcttctgaag ttcctaacac      4380
     aatttgctcg ccgcctgctt tgtcgccgtc atcgttgtca gtgtcaccgt cgctgtcagc      4440
     tttatcaaca tcgacagtga agcccaccga gagtcggatt ccatcaataa gtgacaaggt      4500
     taccagaccg aaacgggtga ttaaaattcc agagaagttg aaagattatg atttgaattg      4560
     atgttacaat acttattttt aaagtgggga gga                                   4593
//
ID   Gypsy-307_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-307_;
KW   Gypsy-307_AA-I; Gypsy-307_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-172
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-172
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 388-388 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 172 BP; 56 A; 32 C; 32 G; 52 T; 0 other;
     tgttctatta tgtacacccc taattattag ttgaatttat acaagcgttg ccacccctac        60
     cttctcgaca cagaggagag ttcagtttga ttgagtgcgc cgcagtgaaa agatcgcaga       120
     gaataaagtt aatgaattcg ctaattcatg tgttttaata aagactaaaa ca               172
//
ID   Gypsy-308_AA-I repbase;    DNA;    INV; 5171 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-308_;
KW   Gypsy-308_AA-I; Gypsy-308_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5171
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5171
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5171 BP; 1678 A; 861 C; 1138 G; 1494 T; 0 other;
     agtggcgacg aaggaaaagt gattcgtgca ggtgctagtt gcttgtgcgt taaattggtg        60
     aagaaaaacg gtgacgggtt tgcctcgtgg aggatagaag gcattgctgc agtaaacgct       120
     atctcacgtc gacgcagaca aaggaaaaag ctagcctcac gcagctggca gaattacccg       180
     ccgtcccaat agtaagcgct agaatcatct gaacagacca attgatttcc tttgaagtga       240
     agcggtagaa acaatcaagc gcaataaata ctgattgttt tgcgtttggt aagtgtacga       300
     agaataaatt tcacctcagg tggaaatttc aagttacggt gatttctggt aacgccattt       360
     tggacgcagc tgtaattaca ttgttcgtga ttttctttct aaaaatagaa caatagaaca       420
     agaaaagaaa acgtagacaa ttaattccaa ttgtttaagc tatatattaa gagagtattt       480
     tcttttttcc aaaggttttc aattgttgcg ccattaccga gtggatcagg gttgcagttt       540
     taccggagtt gtccgactga accgtttctg gattactgtc caacgactcg gtggttgcca       600
     acgggcattg ctgtgaggaa ttcattgaag tcggcaaagg ctgagcgatt ggttctggtg       660
     agtcagttta atatttttaa attgaggcgt tttatctatt gcaaatcaaa aactcattac       720
     aacataccgg agaaagttcc tatagtatca gcatggctca gtctaacata acaactacct       780
     tagaaccctt ccgtaagggc acttcattta gcgattgggt agatagactc agatttttct       840
     ttaacatgaa taaggttacc gatgaagcta aaagggacca ttttattgcc ttaagtggcc       900
     cggtgatttt caaagaacta aagcttttgt atccaaatac cgatttagaa acaattgcct       960
     atgacgaaat ggtaaaaaaa ttgaaagctc gcctagataa gacagagtct gacctagtgc      1020
     agcgtcttaa attcaatatt agagtacagc agccggatga atctttggag gatttcgtgc      1080
     tgtctgtgaa acttcaagct gaattttgca attttgatac tttcaaggat atggccataa      1140
     gagaccgaat tgttgcggga atccgtgata aggttctcca gcaaagactt cttaatgagg      1200
     agaaactaac tcttgatagt gcagaaaaga tgattgcaac ttgggaaatt gcaagaaaca      1260
     atgcgaaaaa tatggattgt gctagcgcaa gttgtctaga acatgtttcg gcactgaggt      1320
     ctatgggggc ctcttcaggg gctaggttta gaaaattggc ggccactttg gatttagcaa      1380
     gcaaagcgaa tcaaggcaat ggtggagttg agcagggaag gggtccggta aagagccggt      1440
     tggggtattc tccgtacaat aaggaacaat cgcgcagcag acagtggcaa ggcaaggcgg      1500
     atcagacaag acaggcacga aatcgtggtc agcacagcac agatgaaaac cgctcatggg      1560
     ctcgacctga ctattctcag atggtttgcg acttttgtgg cgtcaaaggt cacataaaaa      1620
     ggaagtgctt caagctcaaa aacatgcaaa gagacgcgat taacatggtg gatgacaacg      1680
     tatcgggcaa caacaatgag gattacctaa gcgaattggt gaacaaactg cgcgcgggat      1740
     cggacaccga agaggaagaa gacggtgagg aatctgttct ggagtgcatg catgtgtctt      1800
     ctattggtaa aattagtgag ccttgtattt taaatgttgg aattgataat gtaatggtta      1860
     atatggaagt ggattgtggt tcgtcagtaa cggtaatggg aagaggccaa tattttaaac      1920
     atttttcgaa agagttgacg agatgtcaga gaaaattaat tgttgttaat gggtccagcc      1980
     ttgttgtcga gggacaagtt gatgttctag tgaaattcaa aggaatggag cacaagttgg      2040
     tactttttgt acttaattgt aataacaatt ttatccctct attaggcagg ccatggcttg      2100
     atgtattttt cccaaattgg agaggttttt tcgttaattc tatttcaacc aacgcaatga      2160
     caaatcaaga atcaattgac gagattaagg gtaaatactc taatgtgttt cagaaaaatt      2220
     tctccttgcc tatttttgga tatgaagcag atttagtact aaaatcggag gtgcccatat      2280
     ttagaaaagc atatgacgtt ccctatcgct taagggacaa agttttggca tatttgacga      2340
     agttagaaaa cgaaaaagtt ataaccccga ttaaaactag tgaatgggcg tctccggtaa      2400
     tagtagtcat gaagaagaac aatgaaataa gattagtcat agactgtaag gtttctgtga      2460
     acaaattcat tattccaaat acctatccat tacccactgc tcaggatgta tttgcaggct      2520
     tggccaattg cacagttttt tgctcgctgg accttgaagg ggcatatacg caactatcct      2580
     tatctgacag atccaaacaa ttcatggtga taaatacaat aaagggactt tacacgtata      2640
     acagattacc acaaggtgca tcttcaagcg cctccatttt ccagcaagtt atggagcagg      2700
     ttttaaatgg tattgagtat gtatctgttt atttggacga cgtcttggtt gcagggaaaa      2760
     atttcgatga ttgcaaggct aaattactat tggttcttga aagattggaa aatgctaata      2820
     ttaaagtaaa ttttgagaag tgtaagtttt ttgtgaccga acttggtttt ttaggacatg      2880
     taataagcga aaatgggctg aaaccgtctc ctgataaaat ttctaccatt cagcaggcta      2940
     aagcaccaca aaatgtgaca gaacttaagt cattcttagg tttgatcaat tattatcata      3000
     gatttattcc tcgcttatca tcaaagttgt attatttgta caatttgttg aaatcaggag      3060
     agaaattcat ttgggatgat aactgtaaca ctgcttttga aaaaagtaag aattcgttga      3120
     tagaggctaa gtttttggag ttttatgacc ctagcaagcc aattgttatc gtttctgacg      3180
     catctggtta cggtttaggt ggagtaatgg cacatattat tgagggaaaa gaaagaccca      3240
     tatattttac atcattttca cttaattcgg cacaaaagaa ctaccccatt ctccatttag      3300
     aggcgcttgc cttggtttgt acggtaaaaa aatttcataa gtttttattt ggcaaagaat      3360
     ttttaatata tacggatcat aaaccgttag taggaatttt tggaaagaat ggaagaaact      3420
     caatttatgc aaatagacta caaagatatg tactagaatt atcaatttat gagtttgaaa      3480
     ttcaatatag accttcacag aaaatgggca acgccgattt ttgttcccgc tttcctttga      3540
     gccaatcagt tcctgatgaa tttgataaag aattgattaa cagcataaac tacagcgggg      3600
     aattccccat tgattatcgc gaaattgcga ataaaactaa taatgacgaa tttttacaaa      3660
     ctgtgatgaa ttttatgcat aatgggtggc ctgctaaagt gggtagacag ttcatcgacg      3720
     tttttgccaa tcaacaagac ttagaggtgg tagatgaatg tttattgtat caaaataggg      3780
     ttgtgatacc cgttatgatg aaagataagg ttttgaagct cttgcatgcc aaccatgctg      3840
     gtatagtgaa aatgaagcgt ttggcaaggc aatgcgtcta ctggtttggt attaattctg      3900
     atatagaaaa atatgtggcg aattgtgata cgtgtaatag catgataata gttccaaaaa      3960
     cgaaaataga gtccaaatgg ataccaacca ccaaaccatt cagtagaatt cacattgatt      4020
     ttttttattt tgcacatcat acatttttat taactgttga tagttattca aaatgggtgg      4080
     aacttgattg gatgaaaaac ggtacagatt gtggaaaggt tttaaaaaaa ctggtcgcaa      4140
     tatttgcaag atttggccta cctgatgttt tagtttctga tggtggtcca ccgttcaatt      4200
     ctacggcttt cgttggattt ttgaagaaac aaggaataaa tgttctcaaa agtccgcctt      4260
     acaacccttc cagtaatgga caagcagaaa ggttggtaag gacggtaaaa gacgttttga      4320
     aaaagttttt gctagatcca gagtattctc atttagaatt ggaagaccag ataaacctgt      4380
     tcctgataaa ctacagaaat aattgtctga caatcgaggg taatttccca tcgcaattaa      4440
     tgttctcata taaaccaaaa acaatccttg atctattgaa tcctaaatct cagtacaaaa      4500
     atcatttgaa acaacaacta ttggttgaag aggaacttga taaacctaca aacaataata      4560
     agctagtaaa tcccatgaat gatgatgctt cctcgaaagg cagccgggtt atcctggaaa      4620
     gtggcttaga tcctttcgaa catctgacag aaggggatga attatggtac aaaaaccata      4680
     atccgcacaa cccagctaaa tggcttaaag caaatttcat taaacgaagt tctcgaaata      4740
     cattccaggt tcaaattgga agcgtgccaa ccatggccca tcgaggacag cttcgtttga      4800
     gtaaagcaca gaaagatctt aatcctatca tccgatggag tcctcagcag ctgcagcctg      4860
     cccaaagagc gacaagtgag gagttccacg gtttctctga aagcgaaatg cttggaagga      4920
     agcgcaagcg tgcagtcgat aacatggcaa gtgaaattga aatatcgccg gaatcagctc      4980
     ctcggcgatc gaaacgatcg cgaaaactta aaatggataa agattatgtg tacatgaagt      5040
     tttaaatgga aacaaagccc tcaattaaat tttgaattcg attatacgta atattgaatg      5100
     atgtcagagt aatggattta atagttgaat taaaaacaag tctgaagagt ttctttccaa      5160
     gggggaagag c                                                           5171
//
ID   Gypsy-308_AA-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-308_;
KW   Gypsy-308_AA-I; Gypsy-308_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-221
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-221
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 389-389 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 221 BP; 77 A; 40 C; 45 G; 59 T; 0 other;
     tgtgatatac atttagcgtg taggcgatcg ggcgaaatgc cgaattattc gttaaacgaa        60
     aaccgatgta ttcgatcggt agatcgatat aaggatgtga ataaaaagga atagagtcag       120
     tctttacaag aatctcaaca agtgtccatc tacctcattt aaacatacca ctccgaagta       180
     agtccccggt tagcctgtga atctaatagt aagatctaaa a                           221
//
ID   Gypsy-309_AA-I repbase;    DNA;    INV; 4465 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-309_;
KW   Gypsy-309_AA-I; Gypsy-309_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4465
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4465
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 436-436 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..4443
FT                 /product="Gypsy-309_AA-I_1p"
FT                 /translation="MATGLDLRLPQPLDCADLAKEWPRWKQAFGIYLRANG
FT                 KIAESEENKIAIFLWLIGPRGVEIFNTLYPDKASADHLFGVGDAEFGDAVD
FT                 VVVEEPREEQILTLAKVIASFDEYCLPRKNIAMEAFKFNTIAQKERQTFAE
FT                 FETELRTQIQYCEFKCQQCQSSYSDRMLRDRIIIGIQDKKLQLRLLDGRDD
FT                 PLAKVVETCKVFEAASANKLILDRKANLLEVNSMEKPPEGQKEIAVINWKQ
FT                 CYNCGKPFNQNHRRSCPAVNVKCFACGSVGHFSKCCRRKQQKEDPNTKQPM
FT                 KQPTKLPGQVDKAKAVYTVNWSDAGEFLIRRKVSNACVNDSNETIDLYRIN
FT                 STGNGTDGSGAWRKVYQVGNKEVRFKLDTGADVNCIPIDVVNKVGVPIQNV
FT                 NNTHVVDYSSNQIKIHGIVNLTCFDHAKGSSHCADFLVVDSNFEPLLGLQS
FT                 CVDFGLISRLNRVQQLNPVREDKAEFVEKFRDVFEGLGKFPGQCSIVLKEN
FT                 SVPTLFYRKRIPLALHDKIKTELKRMEDESIIAYVDYPTDWVSNMQVVEKS
FT                 NGALRICLDPKALNQCIKREHYLIPTQQDLFSRLSGKRVFTVLDLSSGFWQ
FT                 MELDRKSSDLTTFMTPFGRFRWTRVPFGLNNAPEMFQRKMVQIFGDIAGVE
FT                 IYFDDMAIAGVDEAEHDYILSQVMQRARENNVKFNMDKLQFRKNRVKFMGN
FT                 MIGCGEVLPLEKDVRAITEMPKPKNVADVTRFLGLCKYLAKFMPNLSKRTA
FT                 NLRKLTHNDAPWNWNDVHEQEMNDIVKRISDVPGLAIFDPKKPCIIQTDSS
FT                 KDGLGCVLLQENGPVAYASRTLTKSEQRWAQIEKELLAVVFACQRFHYFVY
FT                 GRDFVVQSDHKPLETLIKRNIDDVTPRLQRMFLILLKYPGLSLVYTPGKSL
FT                 LVADCLSRAALPETGEAQEDLENVVHTLVKKACMSKDNFDLYVEKLNQDER
FT                 YLRITKYVETTWPPYHKLDDLGQLFYKYREQLHFENGLLFKDHRLVIPTAL
FT                 QATVCRWLHAPHLGNEKTLARARTQFFWPGMTNDIKEVTTNCTVCEKFRRN
FT                 NQKEPLLQDSPPEYPFQRVSTDIFEYGGSDWLVLIDAYSGFICSDRLEDKT
FT                 MRSVCRLLDRFFNCYGYPTVVRSDNVPFNSRECDRYANLNNILFEFSSPRY
FT                 PQSNGLAEKGVAIAKNILKRCYETGEVDQFQYRLLEYNSTPVASMQLSPSQ
FT                 LFFGRLVKTRLPIEETLLKRNVLEECDVQRRIQKKRAVQKNYYDRHAKQLP
FT                 MLKSGDKVIFKKNAREWHYGTVVRDVNGRSYVIRDTFGNHFRRNRRFMSRT
FT                 INNDSNPSEVLLEDHAVKYFMNEHSPRVESPLESCINVPRVVSPPETYGNE
FT                 LRVASPPESCTGKVDNSPIVPESIEPETSDRSLQQIFQSTHPEPDHQPPVS
FT                 SSRSTRSGRTVVPPDRYGQWQY"
XX
SQ   Sequence 4465 BP; 1353 A; 837 C; 1069 G; 1206 T; 0 other;
     tggtgtcaga aacggtaatt tacccgcgtg attgaaattt gtgttagaat ggacaaggca        60
     aaagcgtaac acaaagtacg agtgattctg aagaaacaga agattgcgtg agaaaagttc       120
     tggagaaaat cgaagatggc taccggactc gatcttcgac tgccacagcc tctcgattgt       180
     gccgacttgg ctaaagaatg gcctcgttgg aagcaggcgt ttggaatata cctgcgagcg       240
     aacggtaaaa ttgcggaaag tgaggaaaac aaaatcgcca ttttcctatg gctgattgga       300
     ccccgtggtg tcgaaatttt caacacgttg tatcctgata aagcaagcgc ggatcatctt       360
     ttcggcgttg gtgatgccga attcggagat gctgttgacg tggtggtgga ggagccgaga       420
     gaagagcaaa tactcacact tgcaaaagtg atcgcttcgt tcgacgagta ttgccttcca       480
     cgtaagaaca ttgccatgga agccttcaaa ttcaacacca tcgcacagaa agagaggcaa       540
     acattcgccg agtttgagac tgaacttcgt acacaaatac agtattgtga gttcaagtgt       600
     cagcagtgtc aatcatccta ttcagatcgc atgctgcgtg atcggataat tattggcata       660
     caggataaaa aactccaact gagacttctt gatggacgag atgacccgct ggcgaaggtc       720
     gttgaaactt gtaaggtgtt tgaagctgcg tcggcgaaca agcttattct tgaccgtaag       780
     gcgaacctac tggaggtaaa ttcaatggag aagccacccg aaggacagaa ggagatagct       840
     gtcatcaatt ggaaacagtg ttacaattgt ggaaagccgt tcaaccaaaa ccatcgtcgt       900
     tcgtgcccgg cggtgaatgt gaaatgtttt gcgtgtggta gtgtgggcca tttcagcaag       960
     tgctgtcgtc gtaagcagca gaaggaggac cccaatacga agcaaccgat gaagcaaccg      1020
     acgaagctac caggccaggt ggataaggcg aaagcagttt acactgtcaa ttggagtgac      1080
     gcaggtgagt ttcttattag aagaaaggtt agcaatgcat gtgtgaatga ttctaatgaa      1140
     acgattgatt tgtatagaat aaattcaact ggaaatggca ctgatggttc gggagcttgg      1200
     cgaaaggttt atcaagtggg caataaagaa gtgcgtttta aactagacac tggagccgat      1260
     gtgaactgta tacctattga tgtggtgaat aaggtgggcg taccaataca aaatgtaaac      1320
     aatactcatg ttgtggatta cagttcgaat caaataaaaa ttcatggaat agtaaacttg      1380
     acgtgcttcg atcatgctaa aggtagtagt cattgtgctg attttttggt tgttgattct      1440
     aattttgagc cattgctggg tttgcagtct tgtgttgatt ttggattgat cagtcgtctg      1500
     aatagagtcc aacaacttaa ccctgttcgt gaggataaag cagaattcgt tgaaaaattc      1560
     cgtgatgttt ttgaaggatt agggaaattt cctggtcagt gttcaatagt gctcaaggaa      1620
     aattccgttc caactttgtt ctatagaaag cgcattccac tggctttgca tgacaaaata      1680
     aaaactgaac ttaaacgaat ggaggacgag agtattattg catatgttga ttatccaacg      1740
     gattgggtca gtaacatgca ggtggtggaa aaatctaatg gtgcattacg gatttgtctc      1800
     gaccccaaag cgttgaatca atgtattaag cgtgaacatt acctcattcc aacacaacag      1860
     gatttgttta gtcgtctctc tggcaagaga gttttcacgg tgctcgattt aagcagtggg      1920
     ttttggcaga tggagttgga tcgaaaaagt tctgacttga ccactttcat gactcctttc      1980
     gggcgttttc ggtggacacg ggttccgttt ggtctgaaca atgcaccgga aatgtttcaa      2040
     cgtaaaatgg tgcagatttt cggtgatatt gctggcgtgg aaatttactt cgatgatatg      2100
     gcaatagctg gagtcgatga agctgaacat gactacatat tgtcgcaagt tatgcaacgt      2160
     gctcgagaaa acaatgtcaa attcaacatg gataaattgc aatttcgtaa gaatcgggta      2220
     aaattcatgg gtaatatgat cggatgtggg gaagtgcttc ctttagagaa agatgtaagg      2280
     gcaatcacgg aaatgccgaa accaaaaaac gttgcagatg tcacacggtt tctcggtttg      2340
     tgtaaatatt tagccaaatt catgccgaat ctctctaagc gtacagcaaa cctgcgtaaa      2400
     ttgacacaca atgatgctcc gtggaactgg aatgatgtgc atgagcaaga gatgaatgat      2460
     attgtgaaaa ggatttcaga tgtgccaggc ctagctattt tcgatccaaa aaagccctgt      2520
     atcatacaga ctgacagctc aaaagatggt ttgggttgtg tcttgcttca agaaaatggt      2580
     ccggtcgcat acgcctcaag aactttaacg aaaagtgagc aacggtgggc tcaaattgaa      2640
     aaggaattat tagcagtggt atttgcctgt caaagatttc actattttgt ctacggtcga      2700
     gattttgtgg tacagtctga ccataaaccg cttgaaactt tgatcaaaag gaatattgat      2760
     gatgtaaccc ctcgtctgca acgcatgttc ctgatacttc tcaaatatcc tggactttct      2820
     ttagtgtaca caccaggaaa gagtttgctt gtggccgatt gtctttcgag agctgctctt      2880
     ccggaaactg gcgaagcaca agaagattta gagaacgttg tccacactct cgttaagaaa      2940
     gcatgtatgt ccaaggataa ttttgacttg tacgttgaaa aactgaacca agatgaacgt      3000
     tatttacgca ttactaaata cgtcgagacc acgtggccac catatcacaa actagacgat      3060
     ttgggccagc tattctacaa atatcgtgaa cagcttcatt ttgagaacgg acttcttttt      3120
     aaggaccacc gtttggtaat acctacagct ctacaggcaa ctgtatgtag gtggttacat      3180
     gctccccatt taggaaatga aaaaactctt gctcgagcaa gaacacagtt tttctggcca      3240
     gggatgacaa acgatatcaa ggaagtaact actaactgta cggtttgcga gaaattccgg      3300
     cgtaataatc agaaggagcc actactgcag gattcaccac cggagtatcc gttccaacgt      3360
     gtctcaactg acatttttga atacggagga agtgattggt tagttctaat cgatgcatat      3420
     tctggattca tctgttctga tcgtttggaa gacaaaacaa tgcgtagtgt ttgtagacta      3480
     ttagatcgat ttttcaattg ttatggctat ccaacagtag ttcgaagcga taatgtaccg      3540
     ttcaactctc gggaatgtga cagatatgcc aatttgaaca acattttgtt tgagttctca      3600
     agtccccgat atccccaaag caatggactt gcggaaaaag gagtagcaat tgccaaaaat      3660
     attttgaaac gatgctatga aacgggagaa gtcgatcagt ttcagtatag attactcgaa      3720
     tacaattcaa caccggttgc tagtatgcag ttatctccca gccagctgtt cttcggaaga      3780
     cttgtgaaga cccgcttacc tattgaagaa acactgttga aaaggaatgt tctcgaagaa      3840
     tgtgacgtgc aaagaagaat tcaaaaaaag cgtgctgttc agaagaacta ctatgaccga      3900
     catgcgaaac aattaccgat gcttaaatca ggtgataaag tgatctttaa gaagaatgca      3960
     cgagagtggc attacggaac tgtagttcga gatgtgaatg ggcgttctta tgtgattcga      4020
     gatacttttg ggaatcactt ccgtcgtaac cgaaggttta tgtcacgtac gataaacaat      4080
     gactctaatc caagtgaagt tctgttagaa gatcatgctg tgaagtattt tatgaatgaa      4140
     cattcaccca gggttgaaag tccactcgaa tcatgtatta atgtaccaag ggttgtaagt      4200
     ccacctgaaa catatggtaa cgaacttagg gttgcaagtc cgcctgaatc gtgcacagga      4260
     aaggttgaca attcacctat agtgccagaa agcatcgaac ctgaaactag tgatcgatca      4320
     ctgcaacaaa tatttcaaag cactcatccc gagcctgacc atcagccgcc agtcagtagt      4380
     tcgaggtcta ctcgaagtgg tcgtacggtt gtcccaccag atcgttacgg acaatggcag      4440
     tactagtttg ttcaagaaga aagcg                                            4465
//
ID   Gypsy-309_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-309_;
KW   Gypsy-309_AA-I; Gypsy-309_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 390-390 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 71 A; 42 C; 38 G; 63 T; 0 other;
     tgtaataata gcaggtttat tgaacaacat tattaattgg acatccctac tacgttatat        60
     gtatatctca ttaaacacac acagtctcac catgcattgc tatagggaca attattgtca       120
     agctaggtag gactgcgtca ctcacccagt tgtttgtgca ccgtttgacc gtgtggacgt       180
     gaataaaaaa ggcattaaaa cgtaacttaa aaca                                   214
//
ID   Gypsy-30B_DEl-I repbase;    DNA;    INV; 4889 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30B_DEl-I;
KW   Gypsy-30B_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4889
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7051-7051 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 4889 BP; 1757 A; 1062 C; 1319 G; 751 T; 0 other;
     tggcgcccga gcaggttaaa gtggttgcaa agagaaagac atcggtacag agttatgtcg        60
     acgtgggtgt acctagcaac taaggcggat ctgatcaagt acgcaagaga gttcggatta       120
     gacacaacag gaaaagtgga ggagctaaga cagatactgt cagcattcgc aaagaaccca       180
     aaccacacgg agacgatcat gcaaagacta ggagtactag cagagaagca caagaaggaa       240
     aaaggagcaa cggatcagaa cagcacacca gcggaggaac tcaacacgat ggcgaaccag       300
     atcgacatac gggtcaaaca aaccaacacc ccaccacggc gggaatcgga aactccagac       360
     ataccggaca gaaaggtaga agtggaaatc ttagaccgag taaggagttg ggggatccgc       420
     taccaaggag caaccaatcc cttggaattc atcagcaaga tggaggaatg ggccaaaggc       480
     tacggcatac acaaagatgc cctgatccag acgatgccat tcatcctaga aggagtagca       540
     gtggactggt ggaacaccac accgagccag ataaggacat gggaggacct cagggaggaa       600
     ctgttagaat actttttgcc accaagatat caggaacagt tggaaacaca aatcactcaa       660
     ctacggcagc gagaaacaga accaacaagg gaatacgcaa tgaacctgag gaaactaatg       720
     agatttacag agtattcaga agagacaaag ctggaccgga tatacagaaa ctgcagaagt       780
     aaaataaagc tctacacgag acggtcggga tttaaaacat tgacagaatt cctgaggttg       840
     gcagaagaag tggaagaaat agaaactatg gaaggaacca acagaccaac aacaacagga       900
     aaccagaact ttacgtcgga aatctgcata agatgcggag gaacagggca cgccgcaaga       960
     acctgcacaa accccccaag actgttttgc tgggtatgcg gcagaaatgg aacaagaaca      1020
     acggaatgtt gccgagctgg agcgggaaac gccagaggcc tgagcaggta acgctggtag      1080
     ctcaggacca aaaacaaata ccagcgacag gggaacaatt aagttgtgac ggattccaaa      1140
     tatttgccac ggtaaaaatc ggaccagtaa aagcaaaagg aacagtggac acaggagctt      1200
     cacggagtgt gatcagcaag agaagataca acgaattgag aaaatatgga aaatggagga      1260
     agggaaggac agaaataaca ttagcgaacg gatcaaagca aagatcggat ggagacttta      1320
     caaccaacat acagttcgca ggagaagaat tcgagttgga cttcctcatc ttaaaccagg      1380
     tgacaggagg aatattatta ggaatagact ttctggccaa aacgcgcaca agaatccaat      1440
     gcggcaacct ggaattagat atcaccgagg cagagacaac acaaggagaa atagaacccg      1500
     agcagagcac agacgatacg gagccgacgg aggaggaaat cagcaaattt ctggaacaac      1560
     aaaggcaagt attcgaggga atgaagggaa ccagtaatat cacgacacat aaaatttaca      1620
     tgaaggacga cagaccggtg aaacaacgat actacccacg gaacccgaaa caacaagcga      1680
     taataaatga acaagtggat gaattgctgg cactagggtt gattgaacca tcacacagtc      1740
     catacagcgc gccagtagta ttggtaaaaa agaagaacaa cgagtggaga atgtgtgtgg      1800
     actatcggct gttgaacgaa agaacagaaa aagacgccta cccggtacca aggatggact      1860
     ttatattaaa ccagctaaga gaagcaaagt tcataagcac gctagacctg aaatcggggt      1920
     attggcagat accaatggaa ggtctcagtc gacaatacac agcgttcaca gtaccgggac      1980
     gaggcttgtt ccagtggaag gtcatgccgt tcggactcac gacagcacca gccacattcc      2040
     agagagctct agacacggtc ataggcccag agatggagcc attcgcgttc gcatacctgg      2100
     acgatatcgt ggtaatcgga agaaacaaaa aagaacactt ggagaaatta agagaggttt      2160
     tcagaaggtt gcaagcggca aacctaaaga taaatgcgga aaagtgtcat ttcttccaaa      2220
     ccgagctaaa atacttggga cacattgtaa ccgacagagg catcaggacg gacccggaga      2280
     aagtggcagc cattcgagaa ttaccagccc caaaaggcac taaggaagta cacagctttt      2340
     tagggatggc atcatggtac aggaaattca tcccagggtt cacggagaaa gcaagcgccc      2400
     tacaagaact ggtaaagaaa ggaaaaaaat tcgaatggcg gacagaacat caagaggcgt      2460
     tcgagaagat taaagaaagt ttaacaatgg caccagtact agcatgccca gacttcacca      2520
     aacaattcaa gctacagacg gacgcaagcg agctggggat aggagcagta ttaacccagg      2580
     aagacgccga gggggaacat gtcatctcat acgcaagccg gaagctgagc aaggaagagc      2640
     gaaactatag cgccacagaa aaagagtgcc tggcaatcta ctggagcatc aacaaataca      2700
     aaatgtatct ggaaggatac cgatttgtag tggtgacgga tcacctagcg ttgaaatggc      2760
     taaactccat agaaagccct tcagggaggg tagccagatg ggcgctcgga ctacaaccgt      2820
     tccaattcga gattagatac cgaaaaggaa aattgaacgc agtagcagac gcattgtcca      2880
     gggccccacc agtagaaata aagtccgcga actgtcaggg cgactggttg aaggaggcat      2940
     acgaggaggc gcagaaagac ccgagcatca aagaattcag agtagaagga gaaagactct      3000
     acaaaagatg cgggagagaa agggacagac aaccatggaa gctgtgcatt tcacaaagcg      3060
     agattcaaac ggtgcttaaa gaaaaccact gcaacacaac agcggggcac atggggatat      3120
     taaaaacaca gaggaagatt atgcaacgat atttttggcc cggaatgcgg aaggacattg      3180
     tcaaattcgt aaaggcgtgc gagagctgcc agcgatacaa attgtctcaa caaaaaaccg      3240
     cagggaaaat gctgacaaga ataaccgaag caccgtggga aaccgtatgt gtcgacttcg      3300
     tcggacctct accacgcacg aagcatggaa acaccacact aatagtgata gtggatagat      3360
     tttctaaatg gactgaactc gcggcaataa ggagcgcaac ggcagaggca ttcctgaaaa      3420
     tatttcgtga acggataatc gccagagtgg gtgcgccaaa aacactgata tcagacaatg      3480
     gggtccagtt tacgggagga aaaacaaagg ccgccatgga acagtggggc atacagcaac      3540
     aattcacggc gccatatacg ccgcagcaga acccaactga aagaacaaac cgaaccataa      3600
     aaaccatgat atcacaaatg gcaggggagg aacaaactag gtgggacgag aatctgccgg      3660
     agctaatgct agcatacaac agcagcacat ccgaatcaac gggattcagc ccagcccaaa      3720
     tactgtatgg gagagaactc cgactgccgg gagcactgtt cgacaaggtc accaaagggt      3780
     caggattagc gacagaaaca gtagcagcaa ggtggaagag actacaaggc atcagaagcg      3840
     aagcgatcga gaacatggaa ggagcagcag agatacaaaa acaccattac gacctacgta      3900
     aaagagagtg gaagccaagt gtgggacagc tcgtctggtg caaaacacac tacctatcca      3960
     acgcagcgga aaaattcaac gctaaattag caccgaaata tgacgggccg tgggtagtag      4020
     acaaattttg ttcaccggtg atagttatat taaaaaattg taaatcgaag aaagcaaaac      4080
     gcgcatacat cggagatgta aaaatgtata ttgacactaa ccatgaacta accaaccggg      4140
     ataagaaaga aacaaaaggt aactcaaacg atgtattatt aatttcagaa aacaacaaca      4200
     tgaacaaatt cgacgccaca aagaagaagt tccgggagag cagcacacgg ctgcagcaag      4260
     aaaggcgaac ggcgaggttg ataccggcga gaccagcagg ggcgggcata cgggtcagga      4320
     cagcaccgac tcgcctcaga ccaccaatgt gcaggctagc tctggcacaa agagaagggc      4380
     agtcacgacc agaggggcga cagacagccc gaccgccagc aagaacggcc gtggcgaccg      4440
     atagaggcgg acggacccgg atcgcccatg ttcctcgcag ctctcttgag gcagtgaccg      4500
     acggaagtgt ccaggagcaa cagggagaac gggcaaggac accgtcgcca gaccgggaca      4560
     tcctggagct acacccgatg gacacggata cacaagcggc ggatgcacag gcagaggaag      4620
     caacaccaag ccaggagaca gaggcacgcc cagacgcaca ggcgccacga gtggagtgtt      4680
     tcacaaacga tatggggtgg atcgtaccca gagatgcgac gatgtcagcc agggcggtca      4740
     acgaaatcaa agagagatgg aacaggagga gaaaggggaa acagcagagt atcctagtga      4800
     aggacgacca gaagacgtgg aaggccatct ttggaagggg aagccgcatc acgataagac      4860
     acttcgtgcc ttctcaagag ggggggagg                                        4889
//
ID   Gypsy-30B_DEl-LTR repbase;    DNA;    INV; 1377 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30B_DEl-I;
KW   Gypsy-30B_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1377
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7073-7073 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1377 BP; 346 A; 440 C; 322 G; 268 T; 1 other;
     tgtgacgctc aggagcgcac aaagtagata taataacata agcagtagct atagatagtc        60
     gttaagtagg caagaagccg aaatagttat aagttcaata ccgtacaaag gcaagaagcc       120
     gaaataatta taagttcaaa ggcaagaagc cgaaataaat ttaagttgaa tggaaatatt       180
     caaatttaaa tatccgggcg ggcgcgccaa acaaaggaaa cggtcacact gaccaatagc       240
     caccacaagc cacacgcggt atggccatgg ctataggatt atgaaactac agtcacactg       300
     gcgagggccg ggaggatata aaaagggcgc cggggcccat acagatcact ctgcggccga       360
     cggcgatcgg agaaggtaag gcttaccctt tggagtgagc aaacttctct gggagttaac       420
     tgcggagtct tttttcggga tagggtctag taccccgtcc acccaataca ttgtagttag       480
     ttgtttcccc ccccttcccc ttcttcccaa ccccctaagg accggccgtc atcagtgata       540
     tccgaccttt gggatcccac accccaagac cgaccgtcat tagtgacacc cgatcttctg       600
     gggactccac cactcggttc tccgaggcgc tcctcggccg tctgccgaac cgatcccacc       660
     tggttctcac ccgggttgcg tcggtccgca acgcgccctg accaccactc ggttctccga       720
     ggcgctcctc ggccgtctgc cgaaccgatc ccacctggtt ctcacccggg ttgcgtcggt       780
     ccgcaacgcg ccctgcccac cactcggttc tccgaggccc ccggccctgc gcgcccggaa       840
     ctaggaccga tcagatcggc aaggccgacc cctcgtggtc gccacmcttc tcattccctg       900
     gtagacccaa gcggcctcca ccctcttttc ggaactggca gacccaagcg gctccaccct       960
     cttctcgaaa ctggcagacc caagcggcct ccaaactgtc tcatcctcct agacataagc      1020
     atagccaaga gggacgtggc tctttctttc tcatccacag ggtacccgcc gccaccgccg      1080
     ccgacgccgc cgccaccggg acgacgacgc ccaacgacga cgccgaacga cgacacggaa      1140
     gaccccggca acctacgggc ggacgagccc ctgcagcacg aactgtatat atatatatat      1200
     cctatgtaac aaataattct taataaacgc ataccgattc gatttcactg aacccgctta      1260
     cgtgtcatac tctgggaacc gggtcgacct cttacagcaa ccactcctga cataaataaa      1320
     tgttggaacg agcccctgga caccgttgaa ctacctcagc aaagcaggat cgttaca         1377
//
ID   Gypsy-30_AA-I repbase;    DNA;    INV; 5390 BP.
XX
AC   supercont1.271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_AA_;
KW   Gypsy-30_AA-LTR; Gypsy-30_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.271; Positions  655542  650153.
XX
CC   Positions [2597-3025] - Reverse transcriptase
CC   Positions [4355-4816] - Integrase core
CC   'GTTGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1682..3247
FT                 /product="Gypsy-30_AA-I_1p"
FT                 /translation="MSNGHPSPNTPAEDKKKCLRCGYRSHRPGDRCPASNK
FT                 TCLQCGIVGHFRTVCRSKQRSQSNDDWVSRTSSIFCLCYIIWDSNLQGTRK
FT                 RKHSFTATRDKYRSEKRARNVFNVKENSSDESPEDLPVYNVGNGEDEVIQC
FT                 RVGGVQIAMLIDSGSKHNLIDDTTWELMKLRDVKITNQRVDTDKRFLAYGR
FT                 IPLKLITTFDAELEVDDNGDLLRTRTSFHVIQKGQQPLLGKVTAQKLGVLK
FT                 VGLPSTHSSSIRTIESSTKVFPKMKGIKLNIPIDRTVPPVIQPLRRCPIPM
FT                 LEKVEQKLNELLEMDIIERVMKPTSWVSPLVPILKENGDLRLCIDMRRANL
FT                 AIQRLNHPLPIFEDLVARFRNARFFTSLDIKQAFHQVELSEDCRDITTFIT
FT                 NWGLYRYKRLLFGINCAPELFQNLMESILGGCKNTVVFIDDIMIFGETEEE
FT                 HDAAVKQTLHVLSQYGILLNDHKCRFKQREVKFVGHQLSADGVSPSEEKIK
FT                 SILSCRAPRTKEELRSFLGLVTYVSR"
FT   CDS           3956..5293
FT                 /product="Gypsy-30_AA-I_2p"
FT                 /translation="MIRAVQESAAIDIGEVVQATASDDELQDLIKCIETDH
FT                 WERENVKQYKAFRLEFSFVNKLIMRGTKLVIPTALRSRMCELAHEGHPGQS
FT                 MMKRRLRERCWWPGIDVDAVKFCEKCAGCQLVQSIDPPEPMMRRTLPEKPW
FT                 IDLAMDFLGPMPSGEYLLVVIDYYSRYIEIEIMNRITAQETIKRLRRIFRT
FT                 WGPPRTITLDNAKQFVSTEFKEYCSINGIHLNHTSPYWPQANGEVERQNRS
FT                 LLKRMKIAHAIHDDWKVELDSYLDLYNNTPHTITGKAPSELLQGRKLRSKL
FT                 PQFDDLETTPPNTDFRDQDLVKKVQQKEREDTRRRAKLSPIAAGDIVLMKN
FT                 LLPSNKLSTNFLNEKFTVLDRNGSNVTVQSNKSGKQFNRNVSHLKKFNALS
FT                 DAENEESTMEPNTHQVIQKSTEYPETAATDVSGSGPMRRSLRIIRPADRFS
FT                 P"
XX
SQ   Sequence 5390 BP; 1745 A; 991 C; 1220 G; 1434 T; 0 other;
     aaccgtggcg acgaggtgaa aaccaggtta aagcatcgag taataatttg aaaatcgtgg        60
     caggtatgtg aaaaaagtga aaattagtgt tggattcggc ttgtgtggtt agcgccatat       120
     tggaaatcgc agaagttgac cttgaaaaaa aatcaacgct gaattggcac agagttactt       180
     atctatctat aagagtttta aagtggtgct ataaggtgtt ttgatgtaag cgaacgaatg       240
     tgtgaatgaa gaaaatctgt tttttcttta gcataaaatt aattcaagtg ctggaaaaaa       300
     agaaaatgct aaagtgacgc cacatcattt tttttttctc tcctattgtg tgtattggtg       360
     atggaaagta tttctttatg atgggaagga atgaattaca gaaacactat gtgtgtagta       420
     gtgagaaaaa tcgttgatgg tgaaatgaaa ccgtatgcgt gtttagaaag aaaagagaaa       480
     attctaattg gataattatg tgtcgactgt cgaaggtgtc tgtttggcac gaatatgaat       540
     gagatgcatg aaaggttgtg tagccgattc aatgccggtg tgaaacggaa tacatatgaa       600
     catgttgatg aataagcaac cgattcaatt ccggttgaca gtaattgatg gctacgaaac       660
     cgattgaatt ccggtttgaa gaaatagtta gacaagaaac cgattaaatt acggttcaca       720
     attgtgttgt tatgcaagat gttggttatg tgaccgattg aattacggtt gatgatgcgt       780
     gttgtgaata ttttgctgga tattttgaaa gtgttaccga atctattcag gctcagaaaa       840
     atatccaatg tctttgatgt gtaaattaac ttgatgaaaa aaaaaaacaa aatgaaatgg       900
     aaagaaaaga ttatggattg tggtgaaaat aaatgtgtag caataagaaa atatgcttca       960
     gtagaaaata tattgaaaag ctcatgatgt gtgttctgtt atgttttttt tggatgcagc      1020
     ttcagcaaaa tggaaggaat cgaagacagt caacaaatcg ttcagcaaca tgtgcagttt      1080
     tttagcccgg catcgtataa tctacctcac ttcaagtata agcacctccc acaaaccgag      1140
     gtgcgaaatg cttggaacat gtggattagg tggtttgata atgtcatggc tgcagctaat      1200
     gtgttagatg aggcgagcaa gaaggtgcag ttattggcca tgggtggcat ggagctacag      1260
     tgtgcctact acggccttcc aggtgctgat gaagaagcaa acgaagaaga tgactgcttt      1320
     ccttatcaaa gcgcgaaagc caagttaaca cagcattttt caccgaaaca ccacgacagt      1380
     tttgagcgtt tcctcttttg gtcaatggct ccccaggaag atgaaccaat tgagaagttc      1440
     gcttcgaggg ttcaaatgaa agcggagaaa atctgttttg gaaagactgc tcttgaaagt      1500
     cgtcatattg ctattatcga caagataatt caatatgcaa cagatgatct gcgccaaaag      1560
     ttgctggaga aggaggtgtt gaccctcgat gatacaacaa aaatcgtgaa cgcttttcaa      1620
     gcggtgcggt atcaatctgc taaaatgaac agcaaagaaa aggaaaacgt aacaatcaac      1680
     aatgtcaaat ggtcatccta gtcccaacac tcctgcagaa gataagaaga aatgcttacg      1740
     ttgtggatat agatcgcatc gtcctgggga tagatgcccc gcatccaaca aaacctgctt      1800
     acaatgtgga atagtaggac atttccgaac ggtatgtcga tcgaagcaaa ggtcacagtc      1860
     caacgatgat tgggtaagtc gaaccagttc tattttttgt ttatgttata ttatttggga      1920
     ttcaaatctc cagggtactc ggaaacgtaa gcatagcttt acggctacca gagacaaata      1980
     tcgatcagag aaacgcgcta gaaatgtttt taacgtcaaa gaaaatagca gtgatgaatc      2040
     accagaagac ttgccggttt acaatgtggg aaatggagaa gatgaagtca ttcaatgtcg      2100
     tgtaggcggt gttcagatcg ctatgctcat tgattcaggt tctaagcaca accttatcga      2160
     cgatacaaca tgggaattga tgaaattgcg ggacgtgaag ataaccaacc aaagagtaga      2220
     caccgataaa cgattcttag catatggtcg catacccttg aagcttatta cgactttcga      2280
     tgctgagctc gaagttgatg ataacggcga tttattgaga actagaacat ctttccatgt      2340
     cattcaaaag ggtcaacaac cacttctagg aaaagtgaca gctcaaaaat tgggagttct      2400
     gaaggttggg ctacctagca ctcactcttc atcaatcagg acaattgaaa gttccacaaa      2460
     ggtttttcct aaaatgaagg gcataaaatt gaacatccct atcgatagaa ctgtccctcc      2520
     cgttattcaa ccgttgagac gctgcccgat tcctatgttg gaaaaggtag aacaaaaact      2580
     gaatgagctc ttagaaatgg acattattga gagagtaatg aaaccaacat catgggtttc      2640
     acctttggtg cctatcctta aagaaaacgg agatttacgg ttatgtatcg atatgagaag      2700
     agcgaatctg gcaatccaaa gattgaacca tcctctacct atcttcgaag atcttgtagc      2760
     aaggtttcgc aacgcccgat ttttcacatc actcgacatc aagcaggcct ttcatcaggt      2820
     agagctatcg gaggactgcc gcgatatcac caccttcatt acgaactggg ggctgtaccg      2880
     gtataaacgg ctgttatttg gaataaactg cgcgcctgag ctcttccaaa atctcatgga      2940
     aagcattctc gggggatgta agaacactgt tgtgtttata gacgacataa tgatattcgg      3000
     agagacggag gaagagcacg acgctgcggt aaaacaaacg ctacatgtct tgagtcaata      3060
     cggaatactg ctgaatgacc ataagtgtag gttcaaacaa cgggaagtca agtttgttgg      3120
     acatcagcta tcagcggacg gcgtatcgcc cagtgaagaa aagatcaaat caattttatc      3180
     ctgcagggct ccacgtacaa aagaagagct aagaagtttt ctaggtcttg tgacgtacgt      3240
     ttcaaggtaa acttatataa ccttgtaaca tattttcgat gtgtttgtaa tttggtgtac      3300
     tattaggttt attccgaatc tagcgaccat aaactaccct ttgagacagc ttctgaaaca      3360
     gggaattccc tttgagtgga aagcgttaca tcaagagtct ttcgaaaaag tgaaatcact      3420
     cattggatcc gtaggcagct taggtttttt tgaccctaaa gatcgcactt tgctagttac      3480
     tgatgcttct ggagtaggat taggggccgt cttcatccag ttcaagaact gtcaaccaag      3540
     aattatcagc tatgcttcga aaagtttatc cgagatcgag aaaacctatc cacctattga      3600
     aaaagaagcc ctcggtattg tctgggcagt tgaaaggttt agaaactatt tgctcggagt      3660
     cacattcgaa ctagaaacag accatagacc tctggaaaca ttattttcgg caacatccag      3720
     accaacagcg agaattgagc gatggctgtt gcgaatccag gctttcaaat tcaaagtcat      3780
     ttaccgcaaa ggctcggcta atttggcaga ttgtttgtct agattagcgg cacatgttga      3840
     agaccctcaa tggacagaag aaacggatgt tttcataaga agagttgtgg tgcagtcttt      3900
     gtctattctc tcgacttcat ccgatacgca agattttgac acaaaaactg aagaaatgat      3960
     cagagcagtt caagaatcgg ctgcaatcga tattggagag gtcgtacaag caacagcttc      4020
     tgatgatgag ctacaagacc tcatcaaatg catagaaacc gatcattggg agcgagaaaa      4080
     tgtgaagcaa tacaaagcct ttcgactaga attctcattt gttaacaagt tgattatgcg      4140
     aggaactaaa ctagttatcc ctactgctct gaggtcaagg atgtgtgaat tggctcatga      4200
     aggtcatcca ggacaatcaa tgatgaagag gaggcttcgg gagcgatgtt ggtggcccgg      4260
     aatagatgta gatgctgtga aattttgtga aaaatgcgca ggatgtcaac tggtacaatc      4320
     tatagatcct ccagaaccca tgatgcgtcg tacgctcccg gaaaagccct ggatagattt      4380
     ggcgatggat tttctggggc ctatgccatc cggagagtat ctgttagttg taatcgacta      4440
     ttacagtcga tacattgaaa tagaaataat gaaccgaatc actgctcaag agaccatcaa      4500
     acgtttaagg cgcattttca gaacatgggg tcctccaaga acaataacgc ttgataacgc      4560
     gaaacagttt gtttcaactg agttcaagga gtattgttca atcaacggca tacatctcaa      4620
     ccatacttcg ccatattggc cacaagcaaa tggcgaagta gaaagacaga accgatcttt      4680
     attgaaacgg atgaaaattg ctcacgctat tcatgatgat tggaaggtag aactagacag      4740
     ttacctggat ctatacaata atactccgca caccataacc ggaaaggcac ctagtgaatt      4800
     gttacagggc agaaagttgc gatcgaaact tcctcagttc gacgatcttg agacgacacc      4860
     gccaaatacc gatttcaggg atcaagattt ggtcaaaaag gttcagcaga aggagagaga      4920
     ggatactaga aggcgtgcaa agctcagtcc tatcgctgct ggtgatattg tgctaatgaa      4980
     aaatcttctt ccatcgaata agctatccac caacttcctc aacgagaagt ttactgtgtt      5040
     ggatagaaat ggatcgaacg tgacagtgca atctaataaa tctggcaaac agttcaacag      5100
     aaacgtttca cacttaaaga aattcaacgc tctatctgat gctgaaaacg aagaatcaac      5160
     gatggaacca aatacccacc aagtcatcca aaagtctaca gaatatcccg aaaccgcagc      5220
     aactgatgtt tccggttcgg gacctatgag acgatcgctg cggatcatca gacctgccga      5280
     cagattcagt ccttgaagat aagtatacct tttgttctag aagtattgtt ctatttatca      5340
     tcacaaaaat gcgaataaaa tgtttctata aattggtaaa aaaaagggga                 5390
//
ID   Gypsy-30_AA-LTR repbase;    DNA;    INV; 198 BP.
XX
AC   supercont1.271;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_AA_;
KW   Gypsy-30_AA-I; Gypsy-30_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-198
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.271; Positions  650152  649955.
XX
SQ   Sequence 198 BP; 39 A; 43 C; 46 G; 70 T; 0 other;
     tgtggtagac gggtctattt atactgaacc ctattcggta tctatccatt gagaatttgc        60
     accaacacta ccgtatgctc tgcattgggt cagtctgtga ttttgcgctg ctcggtgtga       120
     tcggcttctc gcgtctctgc ggctttgagc aagtaatact gtttgttcgc gaagtgctca       180
     ttttaattga ttactaca                                                     198
//
ID   Gypsy-30_AG-I repbase;    DNA;    INV; 3908 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   19-JUN-2012 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_AG_;
KW   Gypsy-30_AG-LTR; Gypsy-30_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3908
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1434-1434 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [2969-3436] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..2779
FT                 /product="Gypsy-30_AG-I_1p"
FT                 /translation="MSQIGNIEPYVMGESFKEYIHRLEMYFTVNDIAVEKK
FT                 VPVLITMAGASLYSVAIKLCAPDDPRDKTYADLVKVLEKHFKPNVNVVSER
FT                 YLLRKCKQTAEQSIADYIIELKAAAQTCDFGSFLSDALRDQFVAGVYDLEL
FT                 RKRLLKKEDLKFVRACEIARSWEAAQEQNEVMTDRERNVSAAMRKAAKQQP
FT                 ANRQRGQQVMCRRCGKGHDPLNCPARTWKCYVCGKQGHVAKVCRGRSYQRG
FT                 VRKVEGTNTSVPQMITLVCDGKKLVFEIDCGACASVISQKTYTDVFSEVEV
FT                 KPTTMSFISASGQSLKPIGKIEVKIRMPKAEKEEKLELVIIPTEREVSPLL
FT                 GRDGLDLLFPNWRKVFEIKVIETDLIMEIAKKFPKVIKSGENETIEGFKAD
FT                 LVLKAGCGPVFHKAYPVPYSMQTKVEEALDKLVAEGVLRPTRFSKWASPIV
FT                 IVKKQDGSIRLCLDGKVVLNRQLSVEHYPLPKVEDIFAKIAAWKVFCKIDL
FT                 SGAYLQVLLSETSREICTVNTHKGLFQYTRMPFGIHSAPAIFQSLIDQVLQ
FT                 DTEGIAYIDDILVGGTDMQQCKERLYKILWKLNTHNVKINVAKSVLFKSSI
FT                 EYLGYILSDKGIHPNESKVRAIVNAPVPKNVTQLQAYLGLVNYYHRFIPNL
FT                 ANLLHPLYNLLRKQTKFEWTEQCQIAFDKSKNQLVDHQVLIPYDESKPLVL
FT                 QVDASPYGVGAILSHIIDGEEKPIGFASSTLTAAQMNYAQVHREALAVIFG
FT                 IKKFHKYVYGRAFKLITDNSGVKEIFNPSKGTSAITAARLQRWSLFLANYN
FT                 YSIEHKAGKLMSNVDAMSRLPLPEENELENVNLGVNVLKENSQIEIEVIKK
FT                 HQLQDGEIRNVYNLVKNGWKNNLEPGLKVYNKVKNRLGIENGILFFDDRIV
FT                 IPK"
XX
SQ   Sequence 3908 BP; 1361 A; 575 C; 923 G; 1044 T; 5 other;
     cgtaatattg gcgacgagga taaaaaaagg tcacagcaga gaatccgcaa gtaaaaagat        60
     gagtcaaata ggaaacatag agccctacgt aatgggagaa agtttcaaag agtatattca       120
     tcggctggag atgtacttca ccgtcaatga tattgcggta gaaaaaaaag taccagtgtt       180
     gatcacaatg gctggtgcgt cgttgtattc ggtagcaata aagttgtgtg caccggatga       240
     tccacgagat aaaacgtatg cagatttagt gaaggtgttg gagaagcatt tcaagcccaa       300
     cgtgaacgtt gtgtccgagc gttatctact cagaaagtgt aagcagacag cggaacagtc       360
     gattgctgat tacatcattg agctgaaggc agcggcacag acgtgtgatt tcggcagttt       420
     cttatcagac gctctaagag atcaattcgt ggctggcgtg tacgatctgg agcttcgcaa       480
     acggctgctg aagaaggaag atttaaaatt cgtgcgagca tgtgaaatcg ctcgatcttg       540
     ggaagcagcg caagaacaga acgaggtaat gaccgacaga gagagaaacg tgtcggcggc       600
     catgcggaaa gcagcaaagc agcaaccggc gaaccggcag cgagggcaac aggtgatgtg       660
     tcggcggtgc ggcaaaggtc atgacccgtt aaactgtcct gcgcgaacct ggaagtgtta       720
     tgtgtgtggg aagcaagggc acgtagcgaa agtgtgtcgt ggtcgatcgt atcagagagg       780
     cgtacgaaaa gtagaaggaa ctaatacaag tgtaccgcaa atgatcacgt tagtgtgcga       840
     tggaaaaaag ttagtttttg aaatagattg tggtgcgtgt gcgagtgtga tctcgcaaaa       900
     gacatatacg gatgtattta gcgaagtaga ggtgaagccg accaccatgt cttttatatc       960
     ggcgtcgggt caatcgttaa aacccatcgg taaaattgaa gtgaagatta ggatgccgaa      1020
     ggcggaaaaa gaagaaaagt tagagttggt gattatacct acggaaaggg aagtaagtcc      1080
     tttattagga cgagatgggt tggatttatt atttccaaac tggagaaaag tgtttgagat      1140
     aaaagttata gaaacggatc taattatgga aatagcaaag aaatttccga aagttataaa      1200
     atcaggagag aacgaaacaa ttgaaggttt caaggcggat ttagtattaa aggcaggttg      1260
     tggtcctgta tttcataaag cgtacccagt gccatactca atgcagacga aagtagaaga      1320
     agctttagac aagcttgtag cagaaggtgt tttacggcca acacgatttt caaaatgggc      1380
     aagtccaatt gtaatagtga agaagcaaga cggaagtata cgtttgtgtt tggacggtaa      1440
     agtggtattg aataggcaat tatcagtgga acattacccg ttaccgaaag tggaagatat      1500
     ttttgctaaa atagcagcat ggaaggtatt ttgcaagata gatttgtcgg gtgcgtactt      1560
     gcaagtgtta ttatcggaaa cgtctcgtga aatatgtacg gtaaatacgc ataagggatt      1620
     atttcaatat actcgtatgc cttttggcat acattcagca ccggcaatat ttcaatcgtt      1680
     gatagatcaa gtattgcaag atacagaagg aatcgcgtat atcgatgata ttttggtagg      1740
     aggtaccgat atgcagcaat gtaaagagcg tttatacaaa attttgtgga aattgaatac      1800
     gcataatgta aaaatcaatg tggccaaatc agtcttgttc aaaagcagta ttgagtattt      1860
     aggatatata ttatcagaca agggtattca tcctaacgag tctaaagtga gagcgattgt      1920
     taacgcaccc gttccaaaga atgtaacgca actgcaagct tatttagggt tggtgaacta      1980
     ttatcatcgc ttcataccca atttagcaaa tttattacat cccttgtata accttttgag      2040
     gaaacaaact aagttcgaat ggacggagca gtgtcaaata gcgttcgata agtcgaaaaa      2100
     tcagttagta gatcatcaag tgttaatacc ttatgatgag agcaaaccgt tggtattgca      2160
     agtggatgcc agtccttatg gtgtaggagc aattttatcc catataatcg atggtgagga      2220
     aaaaccaata gggtttgcat catccacgtt aactgcagcg caaatgaatt atgcacaagt      2280
     gcatagggag gcattagcgg taatattcgg cataaaaaaa tttcacaaat atgtgtatgg      2340
     aagggcattt aaactaatta cggataacag tggcgtcaag gaaatattca atccgtcgaa      2400
     aggaacttct gcaattacag cagcaaggtt gcaacgttgg tcnttatttt tagcgaatta      2460
     taattattcg attgaacata aggcagggaa gttaatgtca aatgtagatg ccatgtccag      2520
     attaccgttg cctgaagaaa atgaactgga aaatgtgaat ttgggagtaa atgtgctaaa      2580
     agaaaattca caaattgaaa tcgaggtgat aaaaaaacac caattacaag atggtgaaat      2640
     caggaatgtt tataatttgg tgaaaaatgg atggaaaaat aatttagagc cagggttgaa      2700
     agtttataac aaagtgaaaa atcgtttagg aatagaaaac ggaatattat ttttcgatga      2760
     tagaatagtg attccaaaaa ngttaagaaa cgatatactc aacaaatttc acgcaaatca      2820
     cgatggtatc gtaaagatga aaattagtgc gaggaagttt gtttggtggt tgggaatgga      2880
     taagcatatt tcggattttg taacagaatg ttcgatttgt caagcttgtc aaccagttag      2940
     caaagagata gtagaaacaa aatggccttc atgtggaatt ccgtttgaan ggattcatat      3000
     agatttattt tattttgaat ctagaacatt attaataata gtagatgcgt attcgaagtt      3060
     tatagatgtg cgtttgttaa atatggccaa agctaacgac atcatagagc agatagaatc      3120
     tttttttggt tattttggga ttgctcagga agtggttact gataacggtc cgccgttcaa      3180
     ttctgaatca tttgtgaatt ttttgagaga gtatggtgta aaagtaacta aatcaccacc      3240
     gtatcaccct caatcaaacg ggttagcaga aagaggagtg aggacagtaa aagaagtatt      3300
     aaaaaagttt ttgttagatt ctaaacataa atttttgcct ttgagccgca aaataagcaa      3360
     atttctgttg cactatagga atacgcccac tacggttact aaagaaacgc cgtcacagag      3420
     aatttttgct tacattccag taactgtttt aaataaatta aatgcaaagc aagtagaaaa      3480
     aaataaggat aacgaagata attgtaaagc ggtccgtatt cataacataa gaaaggaaaa      3540
     taagtatatc gattttaaaa gcggagaaaa ggtagtgtat agaaaccatt ttaaggantt      3600
     agtgcgatgg attccagcca ctattataaa gaaagttagt tatactactt acactgctaa      3660
     tataaatgga aatatcagat tagtacacaa aaaccaatta aggaagctga aacgcaagtt      3720
     gaattatagt tatattactg aaaagaattg gtcccaaaat gatacattgt tgaatacaga      3780
     gaataattat aaacgcaaac gtagcgaatc acaatctcca cccattagga gatcagatag      3840
     attgaaaggt caaccgcgac tnaaatattg taaatagtta atcgtaagtt tgcgtttagt      3900
     ggggagac                                                               3908
//
ID   Gypsy-30_AG-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   19-JUN-2012 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_AG_;
KW   Gypsy-30_AG-I; Gypsy-30_AG-LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-122
RA   Jurka J.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1443-1443 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 122 BP; 39 A; 14 C; 30 G; 39 T; 0 other;
     tgtagtatat atacatatgc gaaattatag catgtaacta ggtgttagtg agatcggtgt        60
     tagggctcag gttagtgtaa gattatatgg tcagttcaat aaaagcactc atggttgaac       120
     ca                                                                      122
//
ID   Gypsy-30_AnFu-I repbase;    DNA;    INV; 4384 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4384
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2915-2915 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..4359
FT                 /product="Gypsy-30_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDTENKELMEALSGMLVQALKASIGPAIEQVSAGLRS
FT                 SGADGVALHPKPPTFSMPEYRSSEGATVEDYFNRFEWALQLSKIPEPQYAD
FT                 FARVHMGAELNSSLKFLIAPKQPQEATYTELRKILQAHWDEKKNKFVQSVK
FT                 FRTIVQQRGESIAQYVLKLKQGSAYCEYGEFLDRMLIEQMLHGLTDRDICD
FT                 EIIAKNPSTFQDALDVALALEATHKIARDINTSAPETTNKLGYERPMVKRS
FT                 QTRRNITNKTNDNAPKNKAYGKMDNNQPVDCNGCGGGHLRSECRFRNAKCN
FT                 LCSKKGHIAKVCKSGKSKRNVPESDQKSPMSLDHVQWLNRINNLPSGDKKM
FT                 IDVKIDGKTLKMELDTGAPCGIVSESTLRAIKPHFVLQPSDKQFSSYTGHR
FT                 VTCIGRIKVHVTIGSVTHQEQLYVVSGTHDSLLGRDWISHFAEEIDLNRLF
FT                 SARTPVHTVDNSPLSPDRETQLSTLLNSFANVFSEFPGKLIGPPAKVHLKE
FT                 NATPVFAKARDVPLALRDRYAAEIDSKIKSGFYEKVDYSEWASPTHVVVKK
FT                 NGKLRITGNYKPTVNPMMIIDEHPIPRIESIFNRMKGATLFCHLDVTDAYT
FT                 HLPIDMKFREVLTLNTTTHGLIRPTRAVYGAANIPAIWQRRMEEILLGLPN
FT                 VVSFYDDIIVFAKDYQELLLALTSILSRIREHGLKLNRSKCVFATTSLECL
FT                 GHRIDQEGLHKGTKHIEAIRDAPRPSTREELQLFLGKATYYSQYIPNLSTR
FT                 ANVLRNLLATDRIKWSTEADEAYRDIKNALISPQVLTQYDPALPLILATDA
FT                 SKTGLGAVLSHKMNNGLERPIAYASCTMSATEQRYPVIDKEALAIVWAVKK
FT                 FFNYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMANYADYLAHFNFEV
FT                 VYRSTNDNKNADYCSRIPSSEKRSDVNKLALFGGGNDGEDEFEGFVLHQIQ
FT                 QLPIRAEQIARETRKDDHLGKILKDLEMGRDLSHAGYKAPESKYNLVANCL
FT                 LFEHRVVIPCIFRPSILKDLHSAHIGMVKMKALARSYVYWPGIDTDIEKLT
FT                 KACGECAQTASSPPKYNQHHWEYPSNPWDRVHVDYAGPVAGAMLLVVVDAH
FT                 SKWTEVRVTHSTTTAATIAILDDLFASYGAPITVVTDNGPQFVSEEFKTFL
FT                 QRSGVKWHKTSAPYHPATNGQAERYVQTVKKALKAMNTTSTTLSSNLNEFL
FT                 QQYRKVPHSETGEPPAKLFLGRNIRSRLDLIRPQDIHTKFTEKQRAESKSA
FT                 FRTFFAGQRVFFLSGNPRKDKWLLGTVISRLGDLHYRIDSQGVLVKRHVDQ
FT                 MRSTIDKAGNTSSGSTQRTRRRHYFEPITAPEPSISSTPPAQMTTPSDTPF
FT                 ATPTGSPSRFCQDLPPPPRRSERTRRPPQRFSP"
XX
SQ   Sequence 4384 BP; 1317 A; 1089 C; 1012 G; 966 T; 0 other;
     ttggtgtcag aagtgggatt gcaggagata catcggtgcc gaaggaaaca cgatacatca        60
     cacgcacatc ccaaaacaaa aaaagtgagg ttagcgtcac cacgcgcaca cacaaccttt       120
     cgtacgccgg aaagtacgct ctaacgctgt acccagagaa aacggtccac tatggatact       180
     gaaaacaagg agctgatgga ggcgctatcc ggaatgctag tccaggcact gaaggcgtcg       240
     attggacctg cgatcgagca agtaagtgct ggcctacgca gttccggtgc agatggcgta       300
     gctctacacc cgaaaccacc gacattcagc atgccggagt accgttccag tgaaggagca       360
     acagtggagg actacttcaa tcgatttgaa tgggcgcttc aactcagcaa gatcccggag       420
     cctcagtacg ctgatttcgc acgtgtgcat atgggtgctg agctgaactc ttccttgaaa       480
     tttttgatcg ctccaaaaca accgcaggaa gctacataca cggaactgcg caagatcttg       540
     caggcacact gggacgaaaa gaaaaacaag ttcgtgcaga gtgtcaaatt ccggactatt       600
     gtgcaacaac gaggcgagtc gattgcgcaa tatgtattga aactgaaaca aggttcggcg       660
     tattgcgaat acggagaatt tctggaccgc atgctgatcg aacaaatgct ccatgggttg       720
     acagatcgtg atatctgtga cgagataatc gcaaaaaatc cgtccacctt ccaagacgct       780
     cttgacgtag ctcttgcgtt ggaagccacc cataaaatcg ctcgagacat taatacatcc       840
     gctcctgaga caactaacaa gctgggttac gaaagaccta tggtgaaaag atcgcagacc       900
     cgccggaaca tcaccaacaa aacgaacgac aacgccccaa agaacaaagc gtatggcaag       960
     atggacaaca accaacctgt tgattgtaac ggctgtggag gtggtcacct cagaagcgag      1020
     tgccgcttcc gcaacgcgaa atgtaaccta tgtagcaaga aaggccacat tgctaaagtg      1080
     tgcaaatcgg gtaagtcgaa acggaatgtt ccggaaagcg atcaaaagtc cccaatgtct      1140
     ctagatcacg tacaatggct gaatcggatt aacaatcttc catcgggtga taagaagatg      1200
     atagatgtta aaattgacgg taagacactg aaaatggagc tagatactgg cgcaccttgt      1260
     ggaatcgtat cggagtccac attgagagca atcaaaccgc acttcgtgtt gcagccaagc      1320
     gacaagcaat tttccagtta caccggacat cgtgtcacct gcatcggtcg cattaaggtt      1380
     catgtcacca ttggatcggt aactcatcag gaacaattat atgtggtatc cggaacacat      1440
     gattcacttc tgggacgcga ctggatttct cacttcgccg aggagatcga cttaaatcgg      1500
     ttattctctg cccgtacgcc agtccacacg gtagataaca gtccactatc tccagatcga      1560
     gaaacacaac tctctacgct gttgaacagc tttgccaatg tcttcagtga attccccggt      1620
     aagttgatag gtcccccagc aaaagtacac ctgaaagaga atgccactcc agtgttcgcg      1680
     aaggcacgcg acgttcctct cgcgttacga gataggtacg cagcagaaat cgatagtaaa      1740
     atcaagtcag ggttttatga gaaggtcgat tattcggaat gggcatcccc gacacacgtg      1800
     gtagttaaga aaaatggtaa gctgaggata acagggaact acaaaccgac agtaaacccg      1860
     atgatgataa tagacgagca tcctattcca cgcatcgaaa gtatcttcaa ccgaatgaag      1920
     ggggccactc tgttctgtca tctggacgtt acagatgcat atactcattt acctatcgat      1980
     atgaaattcc gtgaagtgct tactttaaat acgaccactc atggtcttat tcgaccaaca      2040
     cgagctgtat acggcgccgc caacatacca gcaatttggc aacgtcggat ggaagaaatt      2100
     cttctaggtc tgccaaatgt cgtgagcttc tatgatgaca ttatcgtctt cgctaaagat      2160
     tatcaagagc tgctattagc attaacgagc atcctgagca gaatcaggga acacggatta      2220
     aaattgaatc gttcgaagtg tgtgtttgcc accacatcac tggaatgctt gggtcatcgg      2280
     atcgatcaag aaggccttca caaaggaacc aaacacatcg aagcgataag agacgcacct      2340
     agaccgtcta cccgcgagga attacagttg ttcttaggga aagcaacata ttactcgcaa      2400
     tatataccga acttatcaac tagagcaaat gttcttcgta atttactggc cacggatcgg      2460
     atcaaatggt ccaccgaagc agatgaagcc tatcgtgaca ttaaaaacgc tctaatttca      2520
     ccacaagttc tcactcaata cgaccctgct ctacctctca tattggcaac ggatgcaagc      2580
     aagacaggac tcggagcagt actttcgcac aaaatgaaca atggtttaga aagaccgatc      2640
     gcgtacgcta gctgtactat gtcggcaacg gagcaacgct atccagtgat tgacaaagaa      2700
     gctcttgcga tcgtttgggc cgtaaagaag tttttcaact acttatacgc aagaaagttc      2760
     acgctggtga cggatcacaa accattgaca caaattctcc atcccgaaaa atcactgccg      2820
     acactttgta taagtcgcat ggcaaattac gccgactatc ttgcacattt caacttcgaa      2880
     gtggtgtacc gatccacgaa cgataataaa aacgctgatt attgttcacg cataccgagc      2940
     agcgagaaac gttcagatgt aaacaaattg gcgttgttcg gaggaggaaa tgacggagaa      3000
     gacgaattcg aaggttttgt acttcatcaa attcaacaac ttcctatcag agcggaacaa      3060
     atcgcccgtg aaacacggaa ggatgatcac ttaggcaaaa tcttgaagga tctggaaatg      3120
     ggacgagacc ttagtcatgc cggttacaaa gcgccggaat cgaagtacaa tttggtagcc      3180
     aattgcttgc tcttcgagca tcgcgtcgtt attccgtgca tcttccgccc gtcaattctg      3240
     aaggatctcc attcggctca catcggtatg gtaaaaatga aagctttggc tcgatcgtat      3300
     gtctactggc caggcatcga cacggacatc gaaaagctga ccaaagcatg tggcgaatgc      3360
     gcacaaacgg catcatcccc tcccaagtac aaccaacatc attgggagta tcccagtaat      3420
     ccttgggatc gagtacacgt cgattacgct ggaccggtag caggagcaat gttactcgta      3480
     gtggtagatg cgcatagcaa atggactgag gtcagagtta ctcactcgac gacgacagct      3540
     gcaaccatcg ccatattgga tgacctgttc gcatcatatg gagcacctat tacagtggta      3600
     acggacaacg gtccacagtt cgtatcggaa gagtttaaaa cctttctaca gcgtagtgga      3660
     gtgaagtggc acaaaacgtc agcaccgtat catcccgcca ccaacggcca agccgaacgc      3720
     tacgtgcaaa cggtaaagaa agcactcaag gccatgaaca ccactagcac gacactgagt      3780
     tcaaatctca acgaatttct acagcagtat agaaaagttc cccactcgga aacgggagaa      3840
     ccaccggcta aactcttctt aggtcgcaat attcgatcac ggctcgatct gattcgtcct      3900
     caagacattc atacgaagtt caccgaaaag cagcgggcag aatcaaaatc tgcttttaga      3960
     actttctttg caggacaacg agtcttcttc ctatcaggca acccaaggaa ggacaaatgg      4020
     ttgctgggta ctgtgatctc gcgattagga gatctacatt accggatcga cagtcaaggg      4080
     gtcctcgtga aacgccacgt ggaccagatg agatcgacca tcgacaaagc cggtaataca      4140
     tcgtctggct caacccaaag gacgcgtcgt cggcattatt tcgagcccat cacagctccg      4200
     gaaccatcca tttcatcaac gccgccagct cagatgacta ccccatcgga tactccgttc      4260
     gcaacaccga caggcagtcc aagtcgtttc tgccaggacc taccaccgcc accgcgccgt      4320
     tcagagagaa cacgtcgtcc gccacaacga ttttcaccgt agtcttcttt taagcgggga      4380
     ggac                                                                   4384
//
ID   Gypsy-30_AnFu-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-179
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2843-2843 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 179 BP; 55 A; 31 C; 42 G; 51 T; 0 other;
     tgttatgttt gacagttgca tgcacattgc tgtcatgcgg agcgcagcgg tgcaacccgg        60
     tggtagtaga gtttcgagag cgtttagaag aacacgttag aagagcacgc gtactatttt       120
     cccatttttt gtaaatctca gaaataaatg aaatcagttt agaattacag aatacaaca        179
//
ID   Gypsy-30_AnMe-I repbase;    DNA;    INV; 5895 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5895
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6842-6842 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           301..1494
FT                 /product="Gypsy-30_AnMe-I_1p"
FT                 /translation="MNNRVLALRNRAIQINTGSLTNICAFQPTYNLNSTTV
FT                 SESCMNQEYSYKERLQILKAELLNQSVEIERALNGTISSMAYEFPIEKAML
FT                 YIPEYHGTAKDLDGFLYQIEYFAKQIPEGESEEDLIRTVMFKLKGEAAGSF
FT                 NRILDDSWNSVKMNLIKVFGEKFSLEAIFQQVETLQQEVNEPFSIYKERVM
FT                 KLKEHIINNDRANTEDSYALKNLKIHFLAGLKNPELKTLARTNKHLSFDEL
FT                 LEYLQEEVVQIEHIRKIEERLNRTQFFETYNNESSMNPCQNSYNYTYPNNQ
FT                 TAPNVDCSTDSRKRCDNGNSSLNHSHFNNFGIPQHNSTTYNTNPPNFNNNY
FT                 SRPRRYFTPYRNNNTQNTIPQNNFTQGPSQNNLYNNSNSSHNHQQSDNPTV
FT                 NKKN"
FT   CDS           1488..4946
FT                 /product="Gypsy-30_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKLKQGTLVNLNKNTSVPTNQNNIFFFGSCQEHQNKY
FT                 DNGLCSDFVEESELLNIDYIKDGKLMAKILSKCMGAKEIYYLIDTGACFNF
FT                 LSLELAKELGASSIDYNDNIKFASFDGIVSDTVGSILINLHIGRSTYPIKF
FT                 YIIKTLNVPGILGAEFLKQYTVKVDKYFQSISLKSPVNGEVNESNIEKLPI
FT                 DSIECDLASPPEDFELLPHIEKQEIDCDVVETSKEIQLIGSERYVELLRKI
FT                 SLDHLEQTTAKDIKNIINDFKNIFYLPGDNLTYTDAASHEIETNSNIPIYK
FT                 RQYRFPAALNTIMELHIEEMLKQQIIRPSKSPWNAPVMCIPKKSDVDGERK
FT                 YRIVVDFRALNLITKPFIYPIPRIDDIMDNIGQSKYFSTIDLKSGFFQIPI
FT                 ARKDAAKTAFSTSKGHYEFLRMPMGLKNSPSTFQKLMNTVLYAIQPVKAFV
FT                 YLDDIVVFGESEEEHNLNLEKVLNGLKQHNLKIEPSKCKILHKQINYLGHT
FT                 INEEGIKPTLANVKSILNMPIPKTLKELRSFLGTINFYGKFLPNVSNIRKP
FT                 LHELLKKNTNFVWNEGCQQAFEKLKQLLTSEPLLLRPNYNDVFVITTDASD
FT                 YALGAVLSNEKTIERPISYASKTLVGAEKRYHPIEKELLAIVWAVEHFKHY
FT                 VYGQKFIIYTDHRPLVSIWRLKENSPILSRLRLRLQGLECEIRYRKGKENV
FT                 VADFLSRLPQIKLREIQEDGQIKTVAVITRQQIKKTLISNNEIEESIGGQT
FT                 MMDTKQANHWEDLMKMDLERETSEQEKQRRDKLNNLKEKAKLKFQNYTPGD
FT                 DKVEIERSEINTVLQEFHDAPLGGHLGTRRMKRRIKDLFFWKGMDKDIEGY
FT                 VRSCKSCQLNKIGRCNKIPMQITTTSKYPFEKVYMDIVILPESEKGNKYGL
FT                 VIQDDLSRYLIVTPMGNQEATTVAKAFVEEVICLVGVPIELVTDQGTNFMS
FT                 QVMKDVCKLLKIKKINTSAYHPQGNIVERANRELKIYLRQFVGKNYKSWDK
FT                 VLPYFAMEYNTCINTSTGYTPYELVFGRKARLPTSIYNQNERKRLYSDFCE
FT                 EMQTKLKEMHLIARENLIQSKHKRKEKYDQNANEWQPMWGEMVLVRNNQTG
FT                 VGQKLQGIWRGPYEVVEIPSDQTCVIRNGKRLEKVHNNRLKRFNE"
XX
SQ   Sequence 5895 BP; 2277 A; 935 C; 1131 G; 1552 T; 0 other;
     tgtggtgaca gcggaaaagc gcaaaatttt tagcgcaggt aacatttctg actggtgtgc        60
     aaaaaacggg agtagctggt gaaatttttt tttgggtaag tggtggcgga aaatagcagc       120
     gttatagtga gtgatattaa attatagtga ataatactac acataagttc ttttgaatct       180
     tttattaatt cgttttaaat ataattagaa aaaaatacat aaatagttaa gatagtttgt       240
     acgatctttc tctttgtaat ttattcccaa atccttcatt ttattttcgg gcgtaaggtg       300
     atgaacaata gggtgttagc acttagaaat agagcaattc aaattaatac aggtagctta       360
     actaatattt gtgcattcca acctacatac aacttaaact ccacaactgt tagcgaatcc       420
     tgtatgaatc aggaatatag ttataaagaa cgcctccaga tcctcaaagc agagcttctt       480
     aaccaaagtg tcgaaatcga gagagcgtta aacggtacaa tttcaagtat ggcgtacgaa       540
     tttccgatag agaaagcaat gctttacatt ccggaatatc acggaacagc aaaagatctg       600
     gacggttttc tatatcaaat agagtatttt gcgaaacaaa ttcctgaagg ggaatcagaa       660
     gaagacctta tacgaacggt aatgttcaaa ttgaagggag aggctgcggg ttcttttaat       720
     cgaattttgg atgattcgtg gaacagtgtt aaaatgaatc tgataaaagt gtttggagaa       780
     aagtttagct tggaagccat tttccagcaa gtcgagacgc tgcaacaaga ggtcaatgaa       840
     cctttttcca tatacaaaga aagagtgatg aaacttaaag aacatattat taataacgat       900
     agagcaaata cggaagattc atacgcactt aaaaacttaa aaatacattt cttggctggt       960
     ttaaagaacc cggaattaaa aactcttgcg agaaccaata agcatctcag ttttgatgaa      1020
     cttttggaat atctccagga agaggtagtg caaatcgaac atatccgaaa gatcgaggaa      1080
     agattaaacc gcacgcaatt tttcgaaact tacaacaatg agagttccat gaacccgtgc      1140
     caaaacagct ataattacac ctatccaaat aaccaaactg ctcctaatgt agattgtagc      1200
     actgatagta gaaaacgctg cgataatggt aacagtagct taaaccattc acattttaat      1260
     aattttggga taccccaaca caacagtaca acatataata ctaatcctcc taattttaat      1320
     aacaattatt cacgcccgag aagatacttt acaccatata gaaacaataa cacacaaaac      1380
     acaatacctc aaaataattt tacacaaggg ccttctcaaa acaacctcta caataactct      1440
     aacagctcac acaatcatca acaatccgat aatccgactg tgaataaaaa aaactaaaac      1500
     aaggaacact agtcaatctt aataaaaaca ctagtgttcc tacaaaccaa aataatatat      1560
     tcttcttcgg ttcatgtcaa gaacatcaga ataaatatga taacggttta tgtagcgatt      1620
     ttgtagaaga gagtgaattg cttaatatcg attatattaa agacggtaaa ttaatggcca      1680
     aaattttatc gaaatgtatg ggagcaaaag aaatttatta tttaattgat actggagcct      1740
     gctttaactt tctaagtttg gaattggcaa aagagcttgg ggcatcttca atagattata      1800
     atgataatat aaaatttgct agttttgatg gaatagtatc cgacacagta ggttcaattc      1860
     taattaactt acatattggt aggtcaacat acccaataaa attttatata attaaaacac      1920
     ttaatgtccc aggaattttg ggggcagaat ttctaaagca atacacagta aaagtcgata      1980
     aatactttca aagcatatcc ttaaaaagtc cagttaacgg agaggtcaat gaaagtaata      2040
     ttgaaaaatt acctattgat agcattgaat gcgatttagc ttccccacca gaagatttcg      2100
     aactacttcc acatattgag aaacaagaaa tagattgtga tgtagttgaa acaagtaagg      2160
     aaatacaact gataggttct gaaagatatg tggaattgtt gagaaaaatt agtcttgatc      2220
     atttagaaca gactacagcg aaagatataa aaaatatcat taatgatttt aaaaatatat      2280
     tttatttgcc aggggataat ttaacatata cagatgcagc ttcacatgaa atagaaacaa      2340
     actctaatat tcccatttac aaacgccaat atagatttcc ggcagcatta aatacgatta      2400
     tggagttaca tatagaggaa atgttaaagc aacaaattat aagacctagt aagagccctt      2460
     ggaatgctcc cgtgatgtgc ataccgaaaa aatctgatgt tgatggggaa cgaaaatacc      2520
     ggattgttgt tgattttcga gctcttaatt taattacaaa gcctttcatt tatccaattc      2580
     ctcggataga tgatataatg gataacattg gccaaagtaa atatttttcc acaattgatc      2640
     taaaatccgg gtttttccaa ataccgatag cacgtaaaga cgctgcgaaa acagcatttt      2700
     caacgtctaa aggacattat gagtttttaa gaatgccaat gggtttgaaa aatagtcctt      2760
     caacttttca gaaacttatg aacactgttc tttacgctat acaacccgtt aaggcattcg      2820
     tgtacttgga cgatattgta gtgtttgggg aatcagaaga ggaacataat ctcaatttgg      2880
     agaaagttct aaacggatta aaacagcaca acctcaagat tgaaccatca aaatgtaaaa      2940
     ttcttcataa acaaataaac tatttgggcc acactataaa tgaggaaggg attaaaccta      3000
     cattagctaa tgttaaatct atcttaaata tgccgatacc aaaaactctc aaggagctac      3060
     gttcgttttt gggaaccatt aatttttatg ggaaatttct tccaaacgtt tccaatattc      3120
     gcaaaccatt gcatgaatta ttaaagaaaa atacaaattt tgtttggaat gaaggctgtc      3180
     agcaagcatt tgaaaaatta aaacaacttc ttacttctga gcctttatta ttacgtccta      3240
     actataatga tgtttttgta atcaccactg atgctagtga ttacgctctc ggagcagtcc      3300
     tttcaaatga gaaaaccatt gaaaggccaa tttcttatgc tagcaaaact cttgtgggag      3360
     cagagaaacg ataccaccca atcgagaagg agctcttggc gatcgtgtgg gccgtagagc      3420
     actttaaaca ttatgtctat ggacagaagt ttatcatata cactgatcat agaccactag      3480
     tgtcaatatg gagactcaaa gaaaattctc caattttatc acgattgcga ttaaggctcc      3540
     agggattaga atgtgaaata aggtatagaa aagggaagga gaatgtggtt gccgattttt      3600
     tatcaaggct tcctcaaatt aaactgaggg aaatacaaga agatggacaa attaaaacgg      3660
     tagcagtcat cacacgccaa caaatcaaga aaacccttat ttcaaataac gaaatagagg      3720
     aaagtatcgg tgggcaaact atgatggata ccaaacaggc aaatcactgg gaagatttaa      3780
     tgaaaatgga tttagaaagg gaaacaagcg aacaagaaaa acagaggagg gacaaattga      3840
     acaatttaaa agaaaaagca aaattaaaat ttcaaaatta cacaccaggt gatgataaag      3900
     tggaaataga aagatctgaa attaacaccg ttcttcagga gtttcacgat gctccattag      3960
     gaggccactt aggaaccaga agaatgaaaa gaaggattaa ggacttattc ttttggaagg      4020
     ggatggacaa ggatatcgaa gggtacgtaa gaagttgtaa atcgtgccag ctcaataaga      4080
     taggaagatg caacaaaatt cctatgcaaa tcacaaccac ctcaaaatat ccttttgaaa      4140
     aagtatacat ggatattgtg attttaccag aatcggagaa aggaaacaaa tatggattgg      4200
     ttatccaaga tgatctctcc agatatctta ttgtaacacc catgggaaat caagaggcaa      4260
     caacagtagc caaagccttt gtagaggagg ttatttgcct tgtaggggtt cctatagaat      4320
     tagtaacaga ccagggcaca aattttatga gccaggtcat gaaagatgta tgtaaactac      4380
     taaaaattaa aaaaatcaat acttctgcat accaccctca aggaaatata gttgaaagag      4440
     ccaatagaga attaaaaata tatttaagac aatttgtcgg gaaaaattat aaatcttggg      4500
     ataaagtatt accatatttc gctatggaat acaatacgtg tataaacact tcgacagggt      4560
     acactccata tgagttggtt ttcgggagga aagctagatt gcccacatca atttataatc      4620
     aaaacgagag gaaaagattg tactccgatt tttgtgaaga aatgcaaaca aaactaaaag      4680
     agatgcactt gattgctagg gaaaatctta tacaatcgaa acacaaaaga aaagaaaagt      4740
     acgaccagaa cgctaatgag tggcaaccca tgtgggggga aatggtgctg gtccggaaca      4800
     atcaaacggg tgtagggcaa aagttgcaag gtatttggag aggaccgtat gaggtggtgg      4860
     aaataccaag cgatcagaca tgtgtaataa gaaatgggaa aaggctagag aaggtccaca      4920
     acaacaggtt gaagaggttt aatgaataaa aaaaaaaata aaaaaaaata gaatagataa      4980
     aaaaaaaaat accgagtctg cccgggataa ggcacgtgca aaaggaggaa atgccctgca      5040
     ctagggttaa gtttagatta ggcagattag ggaaaacgga gcagattgag aatagggcat      5100
     agctagggct actttaagca aaagtaaaaa ttagggtaag aaaaataatg taaatggata      5160
     tgcatcaaca tttttataat aatgcaaatt tagctgaacg ggtttaaaat taggatgtta      5220
     tcaatttata agcttattat attaattttt atgcatatcc ataagaaaaa aaattgtaaa      5280
     attagtgaat aaggatttcg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5340
     aaaaaaaaaa aaaaaaaacg ttaagcaggc taacactttg aggcacacat cacacatcac      5400
     cactgtacac acacacatac actttacacg cacgggtaga acgctacacg cacggatgga      5460
     agcgaaaagc aagcaagcga attgatggca tagcggcata atattcgatg ttcaattaaa      5520
     aggttgatct ggtgcggttg agcggatgaa gttgatagga cagagttgat caaatgctcc      5580
     cccagaggtt gctcttagca gaggattgaa cgagcacacg gcaaattatt agacagcacc      5640
     taaaacaata agacgaaaca ataagcacag cgaagcaggt tgttcgatcc gtatacttag      5700
     gttgcgagag atgctaataa gccaagaagc aagaaatcct ttataagaga caaagcgatt      5760
     gctggtgcac ggtacacgtt tatgcgacgg aagtggtagg ataattgaac gaattgataa      5820
     tatgcaggca gcaggcttga aatagaaggc acatatgcaa attttcttgc tttcgaaaaa      5880
     aaaagtgtaa tgaca                                                       5895
//
ID   Gypsy-30_AnMe-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-338
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6867-6867 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 338 BP; 97 A; 53 C; 101 G; 87 T; 0 other;
     tgtagcgacc ttgcccgcta cgatccgttt tcgataaggc tacgtgtagc tgcggctaaa        60
     ggggcggccg tgagaataaa tattgcggat agttgcgaga ggagaacgag cgaaccaaaa       120
     aaccgagaga gcgagcgatc ggacgaagcg gtacgatgat cgagcggttt tgcggcgcga       180
     tggcgaaaaa aagacgcggc actttggtaa cggttatcag gtggtttggt ggtggttttg       240
     gctcgtgcaa taaagttttt agttggtttg gcgtaatacc aaataaaaat aatttaataa       300
     ttggtttaat tttaaaaaga aagtagttag tcgtttca                               338
//
ID   Gypsy-30_CQ-I repbase;    DNA;    INV; 4939 BP.
XX
AC   AAWU01003903;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_CQ_;
KW   Gypsy-30_CQ-LTR; Gypsy-30_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4939
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 439-439 (2011).
XX
DR   GenBank; AAWU01003903; Positions    8762   13700.
XX
CC   Positions [3822-4289] - Integrase core
CC   'GCGGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           511..1488
FT                 /product="Gypsy-30_CQ-I_1p"
FT                 /translation="MKFVYSVQLQMDTSSKLRCSLAPFDATVDSQDLRREW
FT                 EEWLRAFELEMEMQNVFTQHEKFVRLLSFGGRGLQRIFYNLKPVPEEIIPE
FT                 VVPVPMRPPEDPEYDNAIKRLDKFFVGKVNDRVELEIFRSLRQRPDESFKH
FT                 YLLRLRTQAARCEFNEREDKEILQQISMAAKDEKVRDKGLENIMDLDALTN
FT                 YANNREILIQQKEKTKPFVAEEVLATSKHRGSGWSAGPSRSRGDSKPRGRF
FT                 GTGRPRVVCTRCGSWNHDSNSNSCTARGLRCRQCGKIGHYARKCPGRGQNE
FT                 WRRPENDANALDEAEAWKEEVPRRPKPEDISKVE"
FT   CDS           2502..4787
FT                 /product="Gypsy-30_CQ-I_2p"
FT                 /translation="MFGITCAPEIYQRIMTEMLAGIEGVIIYIDDIVVAGR
FT                 TLQEHDERLREVLAVLERNNTMLNRGKCIIRVQELEILGFKVSAHGISPSA
FT                 EKVQAIKNFRKPETKEEVRSFLGLMNFVGHFIPHLSTRSEPLRKYLRGEIA
FT                 TFGLEQAQAFDDLRNELSNHVRKLGFFDPRETTELYVDASPVGLGAVLVQR
FT                 DSNNTPRIVSFASKGLTVSERVYPQTQREALAVVWAVEKFFFYLFGLHFTL
FT                 YTDHKTLEYIYGGKHQIGKRACSRAEGWALRLQPYDFGVEYLPGTDNISDP
FT                 LSRLVNQDDPAFDDNAEHYLLAVGEGPAAITFNEIRRETSNDDNLSAVMKA
FT                 LETGQWPPELFRYQAFDKELGVVDGMLIRGERIILPVKLRARALEIAHRGH
FT                 PGVVSMRRNLRERVWWPCMDRDVKDNIQKCRGCAVVSKQNPPEPMQRKQMP
FT                 ERAWQEIAVDFFTAKECATFLVVIDYYSRFLKVIEMKTTTAAKTIEALESV
FT                 FGEQTYPEVIRSDNGPPFASEEFRNYCLSKNVRLNHTIPYWPQMNGLVERS
FT                 NQGILRTLRIAKASGTDWRTALQEYVHVYNRTPHSVTEKAPLELLLGRPVK
FT                 DLLPSLRTGPGSYRDEGVRDMDAIKKAKGKLYADKHRHAKPSDIKVGDAVM
FT                 VKNYDSGKLEPNFRSERFTVIKRSENDVVIESENGVRYRRCVTHLRKWPLE
FT                 TSPDNPNPEDEPTEGDKNSESTDIEEQTVKRPKHSCDDHVKGTVLARDRPT
FT                 RAKKLPARYNS"
XX
SQ   Sequence 4939 BP; 1375 A; 1081 C; 1333 G; 1150 T; 0 other;
     attggcgcag ccggtacgat cgagggtagg tatttttttc atctcgagat ggtatttctt        60
     gaaatgaatt ggtttgacgt gtgtgcgggc ggagaatggt tgcggaaaga ttttttttca       120
     ttcgatggct tagaggggcc tgggatggag aaggaggaaa aatcaaaaga gcgggaccgg       180
     ttgaagcccg aagcgccaac acaaaagagc ggggccggtt gaagcccgaa gcgccactaa       240
     tacaaaagag cgggaccgga tgaagcccga agcgccacca atacaaaaga gcgggaccgg       300
     ttgaagcccg aagcgccacc aatacaaata gcggtaccgg atgaagcccg gaggaagaga       360
     gagaaagagg gagaaactga cagtacagcc acagacggta cagatgaagc acgatcaagt       420
     ttgaagacac agatgtaaag atgaatcatc tgagagttgt aattgaaatt gacaaaatag       480
     ttttcgcacg gatgagagaa attggttatt atgaaatttg tttattccgt tcaattacag       540
     atggatacca gcagtaagct gcgttgctcg ctagcaccgt tcgacgcaac ggttgattca       600
     caagatttac gacgggaatg ggaggagtgg ttacgagcct tcgagctgga gatggagatg       660
     cagaacgtgt ttacgcagca cgaaaagttc gtgaggttgc tctcattcgg agggcgaggt       720
     ttgcaacgta tcttttacaa cctgaagccg gtaccggagg agataatccc ggaagtcgtt       780
     ccggttccaa tgaggccacc agaagatcct gagtacgaca atgccattaa gagattggac       840
     aagtttttcg tcggcaaggt gaacgaccgg gtggagctcg aaattttccg ctcgctgagg       900
     cagaggccag acgagtcctt caaacactat ttactacgac tacgcacgca agccgctcga       960
     tgtgagttca atgaacgaga ggataaagaa attctgcagc aaatctcaat ggcagccaag      1020
     gacgagaaag tgcgtgacaa aggattggag aacatcatgg acctggacgc actgacgaat      1080
     tacgcgaaca atcgtgagat tcttatccag caaaaggaga aaacgaagcc atttgtggca      1140
     gaggaggtgc tcgctacgtc aaaacatcgt ggaagtggct ggtctgctgg acccagtcgc      1200
     tctcgtggtg attcaaagcc aagaggacgg tttggaacgg gtcgacctcg cgttgtgtgc      1260
     acccggtgcg gttcctggaa ccacgacagc aactcgaaca gctgcacagc acgtggtttg      1320
     cgttgtcggc agtgcgggaa aatcgggcac tacgctcgaa agtgtcccgg tcgtggacag      1380
     aacgaatgga ggcgtccgga aaacgatgcc aatgctttgg acgaggcaga agcttggaag      1440
     gaggaggtcc cgcggcgccc gaaacccgag gatatctcta aggtagaata ggagttttgt      1500
     taaactgttt gttttgttgg aagagagtga ttaaaagctc gacgtaacgg tttttgttgt      1560
     tggcgattaa taaaatgaat tgaagccgag actgatgcgt gtgttttcgt ttattttgct      1620
     taacaggtca atgattctgg cagcaacgga agtgatgggc acatcttctg catgatcgat      1680
     tcctatccag tggaatttct aatcgattcc ggttcatcaa tcaacacgat cacagaggat      1740
     gtttgggata aactgactga agccaaggtt aagctgtaca atgagaggtc acactgtagc      1800
     cggagcttca cggcatacgc aagccgggac tcgttgtgcg tgctgacaat gttcgaagct      1860
     cacgtgtcag tcaacccatg gaagccacac acttatgcag agtttttcgt catcaaggga      1920
     gccacgaaat gccttctgag taaacgaaca tccgaggaac tccatgtgct caaggttgga      1980
     atcagtgttg ataacattac cgcgaaggtt gaaccgtttc cgaagttccc taacgttcaa      2040
     gtcaagttgt ccattgacaa aagcgtccct cccagactga tctcgtacct ccgtgtgccg      2100
     gtggctatgg aagagaaggt ggacgccaag atcatggaaa tgctgcaaac cgacattatc      2160
     gaaaaagttg aaggcccgcc tgtatggatc tccccgatgg tagttattcc caagggctcg      2220
     ggggacgtac gaatctgcat caacatgaaa tatcccaacg aggcgataaa gcgtgaacac      2280
     tatccgcttc cggtcatcga tacgttcctg aataaactac gaggcgcggt gtacttctca      2340
     agattggaca ttacgtctgc gttctaccac gttgaattac accctgaatc cagagcaata      2400
     acaacgttca tgactgcgag aggtttgatg cggttcaaaa ggttagaatg gttgaatttt      2460
     tcaggtgaca aattaaaaca aattggttgt attttaggtt aatgttcggg ataacgtgcg      2520
     cgccagaaat ctatcaacgc atcatgaccg agatgttagc tggaatagaa ggagtgataa      2580
     tctatattga cgatatagtg gtggcgggaa gaacccttca ggagcacgac gagcgtttgc      2640
     gggaagtcct cgcagtgctg gaacgcaaca acacgatgct gaatcggggc aagtgcatca      2700
     tccgggtgca ggaactcgaa attctcggtt tcaaagtgag tgcccatggc atcagcccgt      2760
     cggcggaaaa ggttcaggct ataaaaaact tccggaaacc agaaaccaag gaagaagtcc      2820
     gtagttttct ggggcttatg aactttgttg gccattttat cccacatctt tcaacaagat      2880
     ccgagccgtt acggaagtat ctccgaggag aaatcgccac tttcggattg gaacaagcac      2940
     aggccttcga cgacttgcgt aacgaactgt ccaaccatgt tcgcaagctt ggatttttcg      3000
     accccaggga aacgaccgag ctctacgttg atgcttcgcc tgtgggactg ggagcagtgc      3060
     tcgtccagcg ggactccaac aacaccccca gaatcgtcag ttttgcttcc aagggcttga      3120
     cggtgtctga acgagtctac ccgcaaacac aacgagaagc attggctgta gtttgggcag      3180
     tggagaaatt tttcttctac ttgtttgggc tacacttcac gttgtatact gatcacaaga      3240
     cgctagagta catctacggt ggtaaacatc agataggaaa acgcgcgtgc tcgagggctg      3300
     aaggatgggc tctacggttg cagccgtacg attttggggt agagtattta ccggggaccg      3360
     acaacatctc agatccactc tcgcgacttg tgaatcaaga tgatccagca ttcgacgaca      3420
     acgctgagca ttatctgttg gcagtgggtg aaggtccagc agccataacg ttcaatgaaa      3480
     tcagacggga aacatccaac gacgacaact tgtccgcggt catgaaggca ctcgaaactg      3540
     gtcaatggcc gccggagctc ttccgttatc aagctttcga caaggaactc ggagttgtcg      3600
     atgggatgtt gatccgtggc gagaggatta tacttccagt aaagctgaga gccagagccc      3660
     tggagatcgc ccatcgcggt catcctggag tcgtgtctat gcgtagaaat ctgcgggaaa      3720
     gagtttggtg gccctgcatg gatcgggacg tgaaggataa tatccagaaa tgtcgtggtt      3780
     gtgctgttgt aagtaaacag aatcctccag aaccaatgca gcgtaagcag atgccggaac      3840
     gggcctggca ggaaattgcc gtagattttt ttacggctaa agagtgcgct acttttctcg      3900
     tcgttatcga ctattacagt cgatttctca aagtcatcga aatgaagact acaacggctg      3960
     ccaagaccat cgaagctctg gaaagtgtgt tcggcgagca aacctatcct gaagtaatcc      4020
     gcagcgataa cggcccccct ttcgccagtg aggaattccg caactactgc ctgagcaaga      4080
     atgtacgctt gaaccacact attccttatt ggccgcagat gaacggtttg gtggagaggt      4140
     caaatcaagg gattcttcga acgctacgaa tcgctaaggc atcggggact gattggagga      4200
     cagcgcttca ggaatatgtg cacgtgtaca acagaacacc acacagtgtc actgagaagg      4260
     ccccgctcga gctgctcttg ggtcgtcccg tcaaagacct actcccgtcc cttagaaccg      4320
     gaccaggatc ataccgcgat gaaggcgtac gtgacatgga tgctataaag aaagcgaaag      4380
     gaaagctgta tgcggacaaa catcgccacg caaagccgtc ggacatcaag gttggcgatg      4440
     cagttatggt caagaactat gacagcggca agcttgagcc aaatttccgt tctgaacgat      4500
     tcacagtcat taagcgaagt gagaacgatg tggtgataga aagcgagaat ggagttagat      4560
     atcgtcggtg cgtaacccac ctgaggaagt ggcctttgga aacctcgcct gataatccga      4620
     atccggaaga tgaaccaacc gagggcgaca agaattctga atcaaccgac atagaagagc      4680
     aaacagtcaa gcgacccaaa cattcgtgtg atgatcatgt aaaaggtact gtgctggcac      4740
     gtgaccgtcc caccagggcg aagaaattgc ccgcacgcta caattcttag caaactttgt      4800
     ctgtttcaac cgttctgagt atttttttct ttttttttct ctcttaaatt tgaatgaaat      4860
     aaacattgtt tttacattga atggtttttt ttatttttag ttttttattt ttagtttttt      4920
     ttctggacta ggagagaga                                                   4939
//
ID   Gypsy-30_CQ-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   AAWU01003903;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_CQ_;
KW   Gypsy-30_CQ-I; Gypsy-30_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-216
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 440-440 (2011).
XX
DR   GenBank; AAWU01003903; Positions    8546    8761.
XX
SQ   Sequence 216 BP; 59 A; 39 C; 72 G; 46 T; 0 other;
     tgtagggtta tgcatttata gctacattat tacttaaaat gggtaaacac agttaacagt        60
     gtagtcaggg agttttgaca gctcgggcgc gagggagaca gttgaaaatc taccaccgca       120
     gcgtgaggac gcgtgattga aggacgggga cggttgacga ggtggaccag gtaacggcag       180
     gcttgaggag ctctcgccgg gggaagaatc tcgaca                                 216
//
ID   Gypsy-30_DAn-I repbase;    DNA;    INV; 6326 BP.
XX
AC   AAPP01014825;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DAn_;
KW   Gypsy-30_DAn-LTR; Gypsy-30_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6326
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01014825; Positions   67770   74095.
XX
CC   Positions [2425-2943] - Reverse transcriptase
CC   Positions [4119-4616] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2068..3825
FT                 /product="Gypsy-30_DAn-I_1p"
FT                 /translation="MKKLGAIIDVKNDILLLENNRKIKIHQLEAQAVNKIG
FT                 PTDEHMTEIQREIIKKFIDTHKNLFADPETKLTYTTRVVGEIRTSSDTPVY
FT                 GKHYPYPASLRQEVEHQKEMLKDGIIRPSRSPYNAPVWVVPKKTDSNEKQK
FT                 YRLVIDYRKLNEVAISDRYPIPEIGEIIAQLGNRSFSVLDLKSGFHQIPLK
FT                 ESDIEKNAFAVNGGKYEFTRLPFGLKNSPAIFQRALDDILREHIGKICYVY
FT                 VDDIIVFSKTESDHAENLNKVFLLLQKANMRIQIDKCHFFKKEVDFLGYTI
FT                 SEEGVKTNIEKIKTIKNFPIPKTLKELRSFLGMTSYYRRFIKDYAKIAKPL
FT                 TALLRGEEGRVSKYKSSRIAINLDKEATGEFEKLKNTLISRDVTLAYPDFT
FT                 KEFQLTTDASNFAIGAVLEQNHRPITFISRTLSKTEENYATNEREMLAIVW
FT                 ALQSLRHYLYGYSKVTIYTDHQPLTFSNSANNHNAKLKRWRDIIGEYSPEI
FT                 KYKPGVANVVADALSRARPEVNSIHSNSTIHSDESSSHNLIFSIEAPINAF
FT                 KNQIFLLKENTDAYNFEIPFPTFHRHIIKKNCLHRTGNH"
XX
SQ   Sequence 6326 BP; 2534 A; 1299 C; 1040 G; 1453 T; 0 other;
     atagaggagg ctccatagta gacccacaca caggaggaat cgttgctgcg tgggacaaaa        60
     aggaatcagc cgaacctatc gtcacgatag cacgccgaaa tgatcttaat gtaagctagt       120
     taagaaatat ttgaaaacag aaaaatccat aagaagcctt gagtaaaata aacacgaaca       180
     aaaaattaat agttcaaatc gaaaataata ggaaaacctc atcaagaaat taaacaaaca       240
     aaaaaaaaat tttaagaata atattaaaaa ggatataaaa attaagttaa aggaaatccc       300
     aatcaaatca tacaaattaa taatatatgc tccaattgaa actttacgaa gatctaaact       360
     agaattttta gaaaaaatta aatataattc gcttgacatc caaacaacta accctcataa       420
     gaccattaat gatcatccat taaaaacctc ataaaaatga ctgaacagga cttggtagat       480
     aggatgggaa atcttgcagg accttcgtcc tctgtaagga cgagttcgaa actactgacg       540
     gaaaaagaca ttgaagagaa aattagggac atacttcaag agaacctagc tgggttggta       600
     aaggaagtca ttaacctaga caaggacttt tcagaccaaa taattaaaag ggaactagcc       660
     cacaatattg gcgagttaga taaattaccg gacatagtgc ggacacttag agacttttct       720
     ggaaataaga ccgaatattc gtcttggaag aaaagtgtag aaagggtttt aaaaatttat       780
     gacagtaaaa aggggtcccc aaaatattat ggcataatat tagcaattag gaacaaaatc       840
     gtcggtcaag cagatgctgt cctcgagtcc tataacacac ctttggactg ggaggcaata       900
     tcgaagtgtc tgactgcaca ctttgctgat aggagagact taaagaccct agaatatcag       960
     ttgtatgcac ttaactaagg cagcaactcg atagtcgaat tctatcaagc cgtataccaa      1020
     caactttctt tgattttgaa ccaaattggg aatctcgaag catctcagga aactatacag      1080
     gcactaacag cactgtatag agagaaagca ctggatacat ttgtaagagg cctgaacctc      1140
     aatctttccc aacttctggc tattaaagaa ccccacgact taggacatgc attacatctt      1200
     tgaaacctaa tagagaatca gaacactagg aatggccaaa caccaaaaaa catttacccc      1260
     agaagagata acttagtacc cactagaggg tatccgccac aagccctacc ccgaatgacc      1320
     aaaccaaatt ttcaaccaaa tctgtactat tacccaagcc aagaaaaaaa acccgcaatc      1380
     ccaccaagga tatttgaaac aacaccaaac cgacctaacc cactcaacca aactcagacg      1440
     aattaaccag gaacacaagc tttctttaat cccaacccac ctcccagacc ccaactaaag      1500
     ccaacaccca tggacgcaga ccagtctatt cgttcacgcc acgttaacta tatgaataga      1560
     cctcaggaca acaattttgt agggaaacga cccctgagca acacaaatgt tcaaaatact      1620
     aataaaatac aacgccagtt caatatacaa ccagaggtag atgaggaaca agaatatttt      1680
     cagtcatcgg aagagaatgg aataaacgag ctggatgaag aagcttcatg gcaagaggaa      1740
     tccgaacaac aggaatccat tgatatgtca gaattatatt ttttagaata aaccgttccc      1800
     ccttacccta ttttaaggta actatcggga acggcaaaac tctgaaattc ttaattgaca      1860
     ccggctcaaa ccaaaattac attcaagcga aactagtacc aagccctaaa cccaatagta      1920
     acaactttac agtaaattca gtaggaggga ataatgaaat aaaaccaaca tacaatagat      1980
     taacttccca atatatcaga tacccctcta aaattctttc tattagatac actgaaaacc      2040
     ttccatggaa ttctaggtaa cgacactatg aaaaaactag gggcaataat agatgttaaa      2100
     aatgatattc tgctgttgga aaataatagg aaaattaaaa ttcatcaatt agaggcacaa      2160
     gccgtaaaca agatcggacc aacagacgaa catatgacag aaattcaaag ggaaataatc      2220
     aaaaaattta tcgacaccca taaaaacctt ttcgccgatc ctgaaacgaa actaacttac      2280
     actaccagag ttgtaggtga aattcggact tcctccgata cccctgtcta cggaaagcac      2340
     tacccatatc cggcatcgct taggcaagaa gtagaacatc aaaaagaaat gctgaaagat      2400
     ggcattatta gaccctcacg gtcaccctat aatgcaccag tttgggtagt cccgaaaaaa      2460
     accgactcta atgaaaaaca aaaatacagg ctagttattg attatagaaa gctcaatgag      2520
     gtagcaatat ccgatcggta ccccatccct gaaataggcg aaataatcgc acaattagga      2580
     aacagatcct tctcagtact agacttaaaa agtggatttc atcaaatacc acttaaagag      2640
     tcagacatag aaaaaaatgc attcgcagta aatggaggca aatacgaatt taccagatta      2700
     ccatttggat taaaaaattc accagccata tttcaaagag ctttagatga cattttgcga      2760
     gaacacatag ggaaaatctg ttatgtgtac gtcgacgaca tcattgtttt cagcaaaaca      2820
     gaaagcgacc atgccgaaaa cttgaacaaa gtgtttcttt tattacaaaa agccaatatg      2880
     aggatacaaa tcgacaaatg ccactttttc aaaaaagaag ttgattttct gggatacacg      2940
     atttcagaag agggagttaa aaccaacatc gaaaaaatca agacaattaa aaacttccca      3000
     atacctaaaa cactaaagga acttcgatca tttttaggaa tgacaagcta ttataggaga      3060
     tttattaaag attatgcgaa gattgccaaa cctttaactg cccttttaag gggagaagag      3120
     ggacgcgtat ccaaatacaa gtcaagcaga atagctatta acctagacaa agaagcaacg      3180
     ggtgaattcg aaaaacttaa aaacacactt atatctaggg atgtaacatt agcgtaccca      3240
     gacttcacga aggaattcca attgaccaca gacgcatcaa attttgccat aggagccgtt      3300
     ttagaacaga accatagacc aataacattc atatcccgta ccctctcgaa aaccgaggaa      3360
     aattacgcaa cgaacgaaag ggaaatgtta gccatcgtat gggctctcca aagcttaaga      3420
     cattatctgt acggatattc gaaagtgaca atttatacag accaccaacc cctgaccttt      3480
     tcaaatagtg caaataacca caatgccaag ctaaaacgct ggagggacat tatcggcgaa      3540
     tacagcccag aaattaaata caagcccggt gtagctaacg tagtagcaga cgccctatcc      3600
     agagcccgac cagaagttaa ttcaatccat tcaaactcta caatccacag cgacgaaagt      3660
     tcctcacata atctaatatt ctcaatagaa gccccgatca acgcatttaa aaaccaaatt      3720
     tttttattaa aagaaaacac tgatgcgtat aacttcgaaa ttccatttcc aacttttcat      3780
     cgccatataa taaaaaaaaa ttgcttacac agaacaggaa atcattaata tactccgagc      3840
     ccgattagat cccagaatta tcaatggtat ctacacttca taagaaataa tgggaaaaat      3900
     tcaaactatt tatcctacgc acttcaagtt ttacaaagtt aggtttacta gttatcaagt      3960
     tgaagacgta ccatcagaaa caacccagaa tcagatcatt ccattagagc acaaaagggc      4020
     acacagagac gcaaaagaaa acaaaataca aattcttaaa aaatacttct tcccacaagc      4080
     tcaaaagaaa attcaggcaa tagtccaatc ctgtcaaaca tgtagagaat ccaaatacga      4140
     tagacaccca ccgaaggggg caatccaacc aactcccatc cctaagtacc catattacag      4200
     aaaaaaataa tattctaact ggtctcgaca agttctcaaa atacgcccaa atcaagatat      4260
     taaaatcaag ggcccccgag gacattaaag agcctttgag agaaatgctg atagcattcg      4320
     gcatgcccaa gtgggtagta atggacaacg aacgcgcttt aaactctgca gtgattcgat      4380
     tccttttaga agatcaactt aaaatatcag tccatacaac agccccatac gcttcaacca      4440
     gtaatggtca ggtagaacga tttctttcaa cactttcaga aatcatgaga tgcattaaaa      4500
     aagacaacgg gagtatgaca ttcgaagacc taattttcaa atcagtcgaa gaatataatg      4560
     ggtccatcca ttcagtaata aaggaaaaac cagttgaggt gtttttcagg aggacataga      4620
     gaaacagcgg accgaaatca gggaaaaaat aaaaaaaaaa caggtagccg acctagaata      4680
     ccataatcag gataaaatac agccaaaaca atatgagaca ggagatacaa ttcatgtaaa      4740
     aatcgacaaa agactaggta ccaaacttac cccacgctat aaaaaagaaa cagtcaaaga      4800
     aaataataac actacaataa aaactcaatc cgggaaaata ttacacaaga ataacatcag      4860
     aaactaactt tcagactatt cataccaact tgcctcagcc tgtctacagt acttgattat      4920
     tcaaattcac aagtgatctt acttgagact ggacttgcgg ccaaacaaga gggaacattc      4980
     aaaatcatcc atacattcga cctaaaagaa tacgacaata catttgacga acttaacaaa      5040
     ggactaaaca gcctcacacc atttataccc ctacctgtct tacgaattaa atcagataaa      5100
     acaaaacctt ctcaaactaa aaacaagcaa tagacaaaaa agagcaatag aaatcctagg      5160
     aacggcatgg aaatggttgg caggaacacc ggaccgccat gatcatcaaa tactaaagaa      5220
     caaaataaac ggacaattag aaaataataa taagcaggtt aaaataaata aaaaattaag      5280
     tgagaaaatt aatcaaataa gtaacgttac gaatgccatt ttaaaaataa ctaatgaaat      5340
     aattaatgaa gaggcaaata tcctcagata tagaattcaa atagtaaaag aagaaatatc      5400
     taatatacta cacgcaataa cttgggccaa aacaaatatt ataaactctt ttatattctc      5460
     aacaatagaa gccaatattt tagaacaaat ttttaataaa ggaaataatc tgtttattaa      5520
     tatggaagaa ttactagaat tttcaaaagt caaacttgca tcgaataata aagctcttct      5580
     gtatatcata agtatcccaa taataagtaa tgaaatctgt agaaccctat tagtcaaagc      5640
     agtaaaaaag gcccatataa tatatgacat aaaatatgaa aacttgttag aatgtaaaaa      5700
     ggaactattc gcgatatcaa aaccatgtga atcgcataat gatagaacca tttgtgttaa      5760
     ggataaactg ttagacttaa gcaacgacac ttgcgtaagc gctctattaa acctaagacc      5820
     accggaatgc aaggcaatca acagccaaca tgtgcctaat tttgaggaat tactaccagg      5880
     aacactgatg ctgaacgact ttaacggaat ggtgtctttg gacggaaaga accttaatct      5940
     tcaaggatcc ttcatcatcc agcacaggaa ctccacggta cagatcggcg aaaacatcta      6000
     cagaacggaa gaggtcactg tggtagaccc cgaacctccg cttttccaac tgtttattaa      6060
     ttaaacatat ttattaaaca taaataacac taagattcca aaaaaaaatt aaagaagaga      6120
     agacaatcga ggtttccgtg aattatacgt cagccactat cctgctcgta agtctgatca      6180
     taatgctagt tagaaggtgc agaccaaaag aagccgcccc gaaaacgaca aaaacaccgg      6240
     cggatccaac cccacctaac cctgttctct tctacgttgc gaacgaggac gcccgctttt      6300
     aaggggggaa gagttaacac ctaaaa                                           6326
//
ID   Gypsy-30_DAn-LTR repbase;    DNA;    INV; 475 BP.
XX
AC   AAPP01014825;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DAn_;
KW   Gypsy-30_DAn-LTR; Gypsy-30_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-475
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01014825; Positions   67295   67769.
XX
SQ   Sequence 475 BP; 176 A; 108 C; 94 G; 97 T; 0 other;
     tgtcaaacac tagataatat taataaaacg ctaagtccaa gcacataagt tctcaattac        60
     aactgcaaaa gagcttacat aaacgcattg agtgcaccgt gcaccggatg caatatgatg       120
     ccgtggcacc aataagggtc acacggatcg aaagacaagt gcgctgagta agcattgatt       180
     atgcttgcga tcgtaggaaa gccaaaagaa agaaaacacc caaatatttg gcaaagctca       240
     ctgaacttaa tggcaagtgc attcaccaac aacacaatgc acttgcattg accaatcagc       300
     aatgaagata tggacttaag ctacagcaac aacatcagct accaatgaca tcgagggacg       360
     ccagcaccag cagcaaccgc gaccgcgatc gcggcagcga tggagcaacg cattggtgta       420
     attattaatt ataagaatca taattgtcag ttctaatccg atactcaaat aaaca            475
//
ID   Gypsy-30_DEl-I repbase;    DNA;    INV; 2252 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2252
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 547-547 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..1077
FT                 /product="Gypsy-30_DEl-I_1p"
FT                 /note="Gag."
FT                 /translation="MSTWVYLATKADLIEYAREFGLDTTGKVEELRQILSA
FT                 FAKNPNHTETIRQRLGVLAEKHKKEKGATDQSSTPAEELNTMANQIDIRVK
FT                 QTNTPPRRESETPDIPDRKEQKVEVEILDRVRSWGIRYQGATNPLEFISKM
FT                 EEWAKGYGIHKDALIQTMPFILEGVAVDWWNTTPSQIRTWEDLREELLEYF
FT                 LPPRYQEQLETQITQLRQRETELTREYAMNLRKLMRFTEYSEETKLDRIYR
FT                 NCRSKIKLYTRRSGFKTLTEFLRLAEEVEEIETMEGTNRPITTGNQNLTSE
FT                 ICIRCGGTGHAARTCTNPPRLFCWVCGRNGTRTTECCRAGAGNARGLSR"
XX
SQ   Sequence 2252 BP; 799 A; 499 C; 648 G; 302 T; 4 other;
     tggcgcccga acaggttaaa gtggttgcaa agagaaagac atcggtacag agttatgtcg        60
     acgtgggtgt acctagcaac taaggcggat ctgatcgagt acgcaaggga gttcggatta       120
     gacacaacag gaaaagtgga ggagctaaga cagatactgt cagcattcgc aaagaaccca       180
     aaccacacgg agacgatcag gcaaagactg ggagtactag cagagaagca caagaaggaa       240
     aaaggagcaa cggatcagag cagcacacca gcggaggaac tcaacacaat ggcgaaccag       300
     atcgacatac gggtcaaaca aaccaacacc ccaccacggc gggaatcaga aactccagac       360
     ataccggaca gaaaggaaca aaaggtagaa gtggaaatcc tagaccgagt aaggagttgg       420
     gggatccgct accaaggagc aaccaatccc ttggaattca tcagcaagat ggaggaatgg       480
     gccaaaggct acggcataca caaagatgcc ctgatccaga cgatgccatt catcctagaa       540
     ggagtagcag tggactggtg gaacaccaca ccgagccaga taaggacatg ggaggacctc       600
     agggaggaac tgttagaata ctttttgcca ccaagatatc aggaacagtt ggaaacacaa       660
     atcactcaac tacggcagcg agaaacagag ctaacaaggg aatacgcaat gaacctgagg       720
     aaactaatga gatttacaga gtattcagaa gagacaaagc tggaccggat atacagaaac       780
     tgcagaagta aaataaagct ctacacgaga cggtcgggat ttaaaacatt aacagaattc       840
     ctgaggttgg cagaagaagt ggaagaaata gaaactatgg aaggaaccaa cagaccaata       900
     acaacaggaa accagaactt gacgtcggaa atctgcataa gatgcggagg aacagggcac       960
     gccgcaagaa cctgcacaaa ccccccaaga ctgttttgct gggtatgcgg cagaaatgga      1020
     acaagaacaa cggaatgttg ccgagctgga gcgggaaacg ccagaggcct gagcagataa      1080
     cgctggcagc tcaggaccaa aaacaaatac cagcgacagg tgaacaatta agttgtgacg      1140
     gattccaaat attkgccacg gtaaaaatcg gaccagtaaa agcaaaagga acagtggaca      1200
     caggagcttc acggagtgtg atcagcaaga gaagatacaa cgaattgaga aaatatggaa      1260
     aatggaggaa gggaaggaca gaaataacat tagcgaacgg atcaaagcaa agatcggatg      1320
     gagattttac aaccaacata cagttcgcag gagaagaatt cgagttggac ttcctcatct      1380
     taaatcaggt gacaggagga atattattag gaatagactt tctggccaaa acgcgcacaa      1440
     gaatccaatg cggcaacctg gaattagata tcaccgaggc agagacaaca caaggagaaa      1500
     tagaacccgg gcagagcaca gacgatacgg agccgacgga ggaggaaatc agcaaatttc      1560
     tggaacaaca aaggaaacaa caacatgaac aaattcgacg tcacaaagaa gaagttccgg      1620
     gagagcagca cacggctgca gcaagaaagg cgagcggcga ggttgatacc ggcgagacca      1680
     gcaggggcgg gcatacgggt caggacagca ccgactcgcc tcagaccacc aatgtgcagg      1740
     ctagctctgt cacaaagaga agagcagtca cgaccagagg ggcaacagac agcccgaccg      1800
     ccagcaagaa cggccgtggc gaccgmtaga ggcggacgga cccggatcgc ccatgttcct      1860
     cgcagccccc ttgaggcagt ggccgacggg agtgtccagg agcaacaggg agaacgggca      1920
     aggacaccgt cgccagaccg ggacatcctg gagctacacc cgawggacac ggakgcgcaa      1980
     gcggcggatg cacaggcaga ggaagcaaca ccaagccatg agacggaggc acgcccagac      2040
     gcacaggcgc cacgagtgga gtggttcacg aacgagatgg ggtggatcgt acccagagat      2100
     gcgacgatgt cagccagggc ggtcaacgaa atcaaagaga gatggaacag gaggagaaag      2160
     gggaagcagc agagtatact agtgaaggac gaccggaaga cgtggaaggt catctttgga      2220
     aggggaagcc gtatcactat aagacacttc gt                                    2252
//
ID   Gypsy-30_DEl-LTR repbase;    DNA;    INV; 1248 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1248
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 470-470 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1248 BP; 329 A; 391 C; 292 G; 235 T; 1 other;
     tgtgacgctc aggagcgcac aaagtaaata taatataata acataagcag tagctataga        60
     tagtcgttaa gtaggcaaga agccgaaata gttataagtt caataccgta aaatgcaaga       120
     agcaagcaaa ggcaagaagc cgaaataaat ttaagttaaa cggaaatatt caaatttaaa       180
     tatccgggcg ggcgcgccaa acaaaggaaa cggtcacact gaccaatagc caccacaagc       240
     cacacgcggt atggccatgg ctataggatt atgaaactac agtcacactg gcgagggccg       300
     ggagggatat aaaaagggcg ccggtggccc atacagatca ctctgcggcc gacggcgatc       360
     ggagaaggta aggcttacac tttggagtga gcaaacttct ctgggagtta actgcggagt       420
     ctttttcggg atagggtcta gtaccccgtc cacccaatac attgtagtta gttgtttccc       480
     ccccttcccc ttcttcccac ccccctaagg accggccgtc atcagtgata tccgaccttt       540
     gggatcccac accccaagac cgaccgtcat tagtgacacc cgatcttctg gggactccac       600
     cactcggttc tccgaggcgc tcctcggccg tctgccgaac cgatcccacc tggttctcac       660
     ccggagaccc aagttgcgtc ggtccgcaac gcgccctgac caccactcgg ttctccgagg       720
     cccaccggcc ctgcggcccg gaagaccgat cagatcggag gccgaccctg tcctggtaga       780
     cccaagcggc ctccaccctc tkctcgaaac tggtagcccc aagcggcctc caccctcttc       840
     tcgaaactgg tagacccaag cggcctccaa actgtctcat cctcctagac ataagcatag       900
     ccaagaggga cgtggctttt tctttctcat ccacagggca cccgccgccg ccgccgccgc       960
     cgccgccgcc gccaccggga cgacgacgcc caacgacgac gccgaacgac gacgcggaag      1020
     accccggcaa cctacgggcg gacgagcccc tgcagcacga actctatata tcctatgtaa      1080
     caaataattc ttaataaacg cataccgatt cgatttcact gaacccgctt acgtgtcata      1140
     ctctgggaac cgggtcgacc tcttacagca accactcctg acataaataa atgttggaac      1200
     gaacccctgg acaccgttga gctacctcag caaagcagga tcgttaca                   1248
//
ID   Gypsy-30_DMel-I repbase;    DNA;    INV; 3511 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3511
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A conceptual reconstructed element. A partial consensus.
XX
SQ   Sequence 3511 BP; 1177 A; 576 C; 809 G; 946 T; 3 other;
     tttgggggat taaccgccga attaatatga aactgtgtaa attattatta ttatattatt        60
     attgtgaaaa ttaatgtgta tgtgtttggc ttcgaagaaa cgaacaaata cacgcagaca       120
     accaaaagag aaaaaagtac aattacaaaa aaaatttcaa gtgctgagtt agaaaatcca       180
     agctgatgaa gtggcataga atactccaaa agtctcaatg gattgcttcg gtaaagttgt       240
     ggtagatttt gacggcgatc aaaaatgact aagacggcaa agttattctt aatcgtatga       300
     agaatcgaaa acagcgcttt taactaagtt caaacgaaaa tttggaagtg cagaagtaca       360
     cgagaaactg gcaaatagga aaaaattgca aacggagagt ttccattaat acgccttgct       420
     gggccaagtt gaaaccaagt ctgtagtacg taatgttgtg aatggattga acatcaaaac       480
     cgaatacaaa tttataatgc atctgtaata catatgagga atttaaagag cgatatgaaa       540
     atttggaatt agtagacgaa aaaaaagcaa cagcatgtta catcagtaaa aaggcggttc       600
     gttgcttcaa ttgtggatgg tctgaacaca tgaagaaaga ttgcaatgct ggaacgaagt       660
     gctttaagtg cggtgctgtg ggtcatatat caacaagttg cccgcagtca gtgaaattgg       720
     tgcaattggt aaaggattcc aaagctctga aaaacattat actaaatggt attgaagttg       780
     cgtgccgggt tgacacgggt gctgatgtta cggttgtgaa gcactctgtg tacatgaggc       840
     taatagatgt tgtgctaagt ccatgtcgtt ctttgtcgcg tggcctgggc aaggcggcca       900
     cgttgcctct gggagttttc gctggagatg ttcaaataga cgatatggag actgttcaaa       960
     acttcatcgt ggtggcggat gaaaaaatgg aaggtgatgg aagtgcattg gatacgattt      1020
     tctatcgaag tttcaattta cactggatgt aaatgggttt acgttttgtg tcgttatcag      1080
     cttggcctga ggtagctaac attaaccaga taagtattca cgattatgtt tgcactgaaa      1140
     gtaatgtgaa tgctcctccc caatttgcac ctatgatacg gaagctgata gacgaatatc      1200
     atccaacctc caattgtgcc ggatgagaaa attaagacgt ttcgtcatca accaagtcga      1260
     catccgccag ttaaagccaa agccgttaaa aaacaagtcg atgactggtt aaaagaagaa      1320
     atcgattgac catctacttc aagcttcgcc agtagaactg tcgtagtgaa gaaaaaagta      1380
     cggcacttac agaatctgta taggactatc gccaattaaa cagcatggtt ctcaaggatt      1440
     gcttccctgt gtcgatttcc tgcaattcta ctgcggcatt tataagattt ataaaccaca      1500
     tattcccgag acattctaca actctatatg gatgatatta taatatatgg acagacgaat      1560
     gacgaatgta ttaagaaact aaagttggtg ctattagaat cagcgaagtt cggcttacgt      1620
     ataaagtgaa agaaatgtca tttccttgta aacaaaatcc acttcctggg acatgcagta      1680
     caagatggaa aggtttggcc tggcagagaa aaaacaatgg ccgttaagca gtttgcagta      1740
     cctaagaatg tgaaagctgt tcaatccttt ttcggtctaa cgggattctt caggaagttt      1800
     gtaagagact atgccatcat tgcgcgacct ttaaccaatc tattaaaaaa ggatgccact      1860
     ttcaaattgg agtctaaaga atacgcagct attgagagtc tgaagagtgc attgtgtgaa      1920
     gaatctgttt taaggatttg ttgtagaggt gcatcaacgg agctgcacac agatgcttca      1980
     aaggacggat tcggtgccac attgctgcag aatattgaaa atcaattgca ccccatattt      2040
     tattggagca aaaagacgag tccaagtgaa tcaggaagac acagttacat tttggaagta      2100
     gaggctgctt atttagctat gaagaaattt cgccattatt tacttggtgt tccgttcaag      2160
     ctggttactg acgacatagc gttacgcaga ccatcaagaa gaaagacgtt cctcgagagg      2220
     tagcagaatg gattttgtat atggcagatt tcgacttcaa gacagagcat cgtgcgggtg      2280
     agagaatgcg tcagatggac tgtctcagcc gttatgccaa cgagattttt tttatatcgt      2340
     ctaagatatc ttgtcggttg aaggctgccc aacaaaaaga tgaatatatt caggccatac      2400
     gcacgatatt ggaagaacga ccttacaacg actttaactg aagggaggag ttttgttcaa      2460
     gtttgtcaaa ggaaatgatt tgcttgttgt acctaaaata atggaacgtg agattataag      2520
     cgaagctcat ggagtcggac attatgcaac acaacagcag ttttggattc cacacctaga      2580
     gagcaaggtc gcaaagctta taaacgcgtg tattccgtgc attattacga acaaaaagct      2640
     gggcaaacag atggactttt atgctgattg ggagatggac tcgtctgtga aacaatataa      2700
     gtacatcttc gcacttgttg atggattttc gaaattcgtg tggattttta ctacaaaatc      2760
     aactggagct gacgaagttt tgaagaaaat ggaagaatgg tcaaacgtat ttggtaatcc      2820
     gagcagaata ataaccgaca gaggagttgc gtttacttca ggagcatttg aagattacct      2880
     caagagaaat ggaatcgagc atgtcttaac aacaactgga gttgccagag gaaatgggca      2940
     ggtagagaga ataaataggt ctatcttgtc tattatttct aatccggctg aagattcttc      3000
     aaagtggtat aagttcacat cacaagtgca aagagctatt aattccctaa gttgctctac      3060
     aaagaagtca ccatttgaga taatgtttgg agtaaaaatg cagaataagt ccaacgccag      3120
     actattgaaa cttttggaaa atkaaatkct tgaagaattt gacaaasaga ggcagatatt      3180
     acgacaagcg gttaagggac aaatactaaa ggctgaagat gtttttaaaa aacagtacga      3240
     caagaaactt aaagaagaag ttgtatacaa agaaggtgat cttgtagcag taaaacgtac      3300
     tcagtttgtt gctgggaaaa agttgacaag cgcttttcta ggaccttttg aagtaataag      3360
     atatgtagtt cgtaaagctg tcaaaggaga aggccccacc aacaagacgc atacgagtgc      3420
     tgataaaatg aagctatgga agtatgctca gaataatgag gatgacttat cgtctgggac      3480
     agacgatgat gagcaggatg aacaggccga g                                     3511
//
ID   Gypsy-30_DMel-LTR repbase;    DNA;    INV; 372 BP.
XX
AC   .
XX
DT   17-AUG-2018 (Rel. 25.03, Created)
DT   17-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-372
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 740-740 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 372 BP; 136 A; 53 C; 94 G; 87 T; 2 other;
     tgtaaacaat gatagtgatg gcagcgcgat agcacaggtg gcaacactgc aggaaactat        60
     cgataggatc aggagagcag ttggctggaa tgatcgaaga agaagttgca gatcgtgaag       120
     atagagggga gtcgtcgcca agaagtcaag tagaaaaagt tgcaaaagag aagtcgaaaa       180
     gaacgcgcat aagtcaagag ttgtggaaaa gcggataagt cggtcggttt ttcagaaacg       240
     attagtcaag tcggacagtc gttgaaagca gaagtagtgt tgcgtgaagt tcaktctktc       300
     aaatattaca catttgtcaa tactcttaaa cttaactttg atataataaa taaatattac       360
     actaatatta ca                                                           372
//
ID   Gypsy-30_DWil-I repbase;    DNA;    INV; 4494 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DWil_;
KW   Gypsy-30_DWil-LTR; Gypsy-30_DWil-I.
XX
NM   Gypsy-30_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4494
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..4038
FT                 /product="Gypsy-30_DWil-I_1p"
FT                 /translation="MQTPRAPATDEKGKHVTLPKFNPEGAGADATAWCTTV
FT                 DLIFADKMPEGSTLMITLSKALEGSASQWLSQICFAGITWPQFKELFVQRF
FT                 VGIETSAAILMKILNGRPKSGESYTEYGSRIVTLIMSKFKSNDLEEIAVSL
FT                 ALAHMAQMDDKLSRLVFTNNIKTRNEMQQQLQAHTFKKRNLDDDSSTTGPE
FT                 RKKPKYLSQVKCNYCGKSGHKYAECRARQRTPIQGKSHYGSSSQGSKDRST
FT                 VKCFKCDELGHFASACPKGRPRGNDRVIEKRVDICTVAPPSGTICSSTGES
FT                 IPFCFDSGAECSLVKESVADKFSGKRINNIVKLNGISNDSICSTQQLLCNI
FT                 SIDQCYFEILLHVIMDKYLKHDVLIGREIFSQGFGVTMDADKFQLYKTKRV
FT                 EALIISNYEDVIESNSELDDLDKAALINILKYYSEWFIDGIPKTRVTTGHL
FT                 EIRLIDQQKTVQRRPYRLSEEEKNKVRGKVDELLKAQVIRPSCSPFASPMM
FT                 LVKKKNGTDRLCVDYRMLNDNTVADKYPLPLISDQIARLRGAKYFSCIDMA
FT                 SGFYQIPVHEDSIERTAFVTPEGQYEFLTMPFGLKNAPSVFQRAIMKALGA
FT                 LAYTYAIVYIDDVLIIAESKEDALVRLRTVLETLSKAGFSFNVTKCSFLTT
FT                 RIEYLGFELSNGEIRPNSRKIQALNGLPPPQNVSQLRQFIGLASYFRQFVL
FT                 NFSQTLKPLYLLTSKKNTDFVWLPVHEQIRTKIITILTQTPVLIIFDPQYP
FT                 IELHTDASCIGYGAILLHKIDNKPHVVEYYSKCTSPAESKYHSYELETLAV
FT                 VNAIKHFRHYLQGRKFIVYTDCNSLKASRTKLDLTPRVHRWWAFLQAFDFE
FT                 IEYRKGERMAHVDFLSRNPVLEQHKRPNKIPELRINLTEVSDNWLVSEQQR
FT                 DSEIQEIILKLKSNELPGNMDKTYELRKGILHRKIQRNSKTKCLPVIPRAF
FT                 RWAVINHVHEAIMHLGWEKTLDKVYGYYWFENMSKYVRRFVENCITCKVSK
FT                 PLVGKVQVELHPIPKIEIPWHTIHIDITGKMSGKNDLKEYVIVLIDAFTKF
FT                 VYFHHTLNIDSESCIKAVKSAVSLFGLPTRIIADQGRSFASKSFREFCSSQ
FT                 KINLHLIATGASRANGQVERVMSTLKGMLTAVETSQRSWQDALAEVQLAMN
FT                 CTINRVTKFSPLELLIGKEARPFGLLPINEDNNDEVDKENLRKEAKKNMET
FT                 QAKYDKNRFDKNKAKIVNFKVGDHVLLKNEERHQTKLDPKFKGPFEIIETL
FT                 DGDRYLLKSLTCNRKYKYSHECLKAIPNNQILDELCEDRDSTMEVASVVQY
FT                 DK"
XX
SQ   Sequence 4494 BP; 1571 A; 779 C; 931 G; 1213 T; 0 other;
     tcagaagtgg gatctgcctt gcctacaaat accaccgatg catacttggc agctttacaa        60
     ctgcaaaaca acaacctttt ggagatcatt aaaaatatgc agacaccaag agctccggca       120
     actgatgaaa agggaaaaca tgtaactctg ccaaaattta atcctgaggg agctggagca       180
     gacgccacag cttggtgtac gacagtggat ctcatatttg ctgataaaat gccagaagga       240
     agcaccctga tgataacttt aagtaaggcg ctagagggaa gcgcatcaca atggctgtcc       300
     caaatatgct ttgctggcat tacatggcca caattcaaag aactctttgt gcaacgcttt       360
     gttggcatag aaacgtctgc ggctatactg atgaaaattt tgaacgggcg accaaagtct       420
     ggagaaagct acaccgagta tggcagccga attgtcaccc taataatgtc aaaatttaaa       480
     tctaatgatc tggaggaaat cgcggtttcc ctagctctgg cccacatggc acaaatggat       540
     gacaaattgt cgcgcttggt ttttacaaac aatattaaaa cccgaaatga aatgcaacaa       600
     caactacaag cgcacacttt taagaagcgg aacctagatg acgactcatc tacaacaggc       660
     ccggagcgta aaaagcctaa gtatctctct caagtgaaat gcaactattg tggaaagtct       720
     gggcataaat atgctgaatg tcgtgctcgg caaaggacac caattcaagg aaaaagccac       780
     tacggaagtt catcgcaagg atcaaaagac cggtcaactg tcaaatgttt caaatgcgac       840
     gagcttggac acttcgcatc cgcttgccca aaaggacgac cacgaggaaa cgaccgagta       900
     attgagaaac gtgtagacat ctgtactgta gctccgccat caggaacaat atgcagttca       960
     accggtgagt ctattccatt ttgtttcgac tccggagctg aatgctcctt ggttaaggaa      1020
     agcgtcgccg ataagtttag tggtaaaaga attaataaca ttgtaaagtt aaacggtata      1080
     agcaatgatt caatatgtag cactcaacaa ctattatgta atataagtat tgatcaatgt      1140
     tatttcgaga ttttgttaca tgttattatg gataagtatt tgaaacatga tgtactgatt      1200
     ggtcgtgaaa tttttagtca gggctttggc gtaactatgg acgctgacaa atttcaactt      1260
     tacaagacca aaagagttga agcgttaata atttccaatt atgaagatgt catagaatcg      1320
     aatagtgaac ttgatgatct tgataaggca gccttgataa atattttaaa atattattca      1380
     gaatggttta ttgatggaat accaaagact agggtcacca cagggcattt ggaaattaga      1440
     ctaatagatc agcaaaagac agtacaacgg cggccatata ggcttagtga agaagaaaaa      1500
     aacaaagtgc ggggtaaagt tgacgaatta ttaaaggctc aagttattcg cccaagctgt      1560
     tcacctttcg ctagtcccat gatgctagtt aagaagaaaa atggcaccga tcgactgtgt      1620
     gtagactatc gcatgctaaa cgacaataca gttgctgaca aatacccgtt gcccctcatc      1680
     tcagaccaaa ttgccagact tcgtggtgct aaatattttt cgtgcattga tatggcaagt      1740
     ggcttctatc aaattccagt tcacgaggac tcaatcgaac gaactgcatt tgtgacgcca      1800
     gaaggtcaat acgagttctt gacaatgccg ttcggtttga agaacgcacc atctgtgttc      1860
     cagagggcta taatgaaggc cttaggagct ctagcttaca cttatgcaat cgtgtatatt      1920
     gatgatgttc tcataatagc agaaagtaaa gaagatgcgc tagttagatt acggacagta      1980
     ttggagacat taagtaaggc tggattttca tttaatgtca ctaagtgttc ctttctcaca      2040
     actagaatag agtatcttgg atttgaatta agcaatggag aaatcaggcc aaattcacga      2100
     aaaattcaag ctttaaatgg attaccacca cctcaaaatg tttcacagct aagacaattt      2160
     ataggtttag cttcttattt tcggcaattt gtgttaaatt tctcccaaac acttaaaccc      2220
     ctgtatcttc tcacctctaa gaaaaacact gactttgttt ggttaccagt gcatgaacag      2280
     atacgaacaa aaataataac tatattgaca cagacgccag ttttaatcat attcgatccg      2340
     caatacccaa tagagctaca tacagacgca agttgtattg ggtatggagc gatcctgtta      2400
     cacaaaattg acaataaacc tcatgtggta gagtattaca gtaagtgtac gtctcccgcc      2460
     gaatctaaat accattcata cgaactggag acgttagcag tagtaaatgc tattaaacac      2520
     ttccgacatt atttgcaggg acgtaaattt atagtttata ctgactgtaa ttctttaaag      2580
     gccagtcgca caaaattaga tttaacaccg agggtgcata gatggtgggc gtttttacag      2640
     gcatttgatt tcgaaataga atatagaaaa ggcgagcgaa tggcgcatgt tgactttctc      2700
     tctcggaatc cagtgcttga acaacataaa agaccgaata aaatccctga attacgaatc      2760
     aatttgacgg aggtatctga caactggttg gtctcggaac aacagcgaga ttccgagata      2820
     caagaaataa ttttaaagtt aaaaagtaat gagttaccag gaaatatgga caagacctat      2880
     gaattgcgaa aaggaatact acataggaaa atacagcgaa atagtaagac caaatgtttg      2940
     ccggtaatac caagagcttt tcgatgggcc gtcataaatc acgtccatga agctataatg      3000
     catctgggtt gggaaaaaac gctcgacaag gtctatggtt attattggtt cgaaaatatg      3060
     tccaaatatg tgcgtaggtt tgttgaaaac tgcatcacat gtaaagtatc taagccactt      3120
     gtgggaaaag tgcaagtcga gctgcatcct attcctaaaa tagaaatacc atggcatacg      3180
     atacatattg acattacagg caaaatgagt ggtaaaaatg atttgaagga atacgtcatc      3240
     gttcttatag atgctttcac taagtttgtt tattttcatc acacactaaa tatagattct      3300
     gaaagctgca ttaaggctgt aaaatcagcc gtatctttat ttggtttacc cactcgaatt      3360
     atagcagatc aaggacgcag tttcgcaagt aaaagtttcc gcgaattttg ctcatctcaa      3420
     aaaattaatc tacatttaat tgctacgggt gccagtagag caaacggtca ggtagaacgg      3480
     gtcatgagta ccctgaaagg tatgctgact gctgtcgaaa ccagtcagag atcatggcag      3540
     gatgcgttgg ctgaagtgca gctagcaatg aattgcacga ttaatcgtgt gactaagttt      3600
     agccctttag aactattgat tggaaaggaa gctcgacctt ttggcttgtt gccgataaac      3660
     gaagataaca atgatgaagt agacaaagaa aatttgagaa aggaggctaa aaagaatatg      3720
     gaaactcaag caaaatatga caaaaatagg tttgataaaa ataaagctaa aatagtaaat      3780
     ttcaaagtgg gtgatcacgt tttgctcaaa aacgaagaac gtcatcaaac caaacttgat      3840
     ccaaaattta aagggccatt tgagataatt gaaacattgg atggagacag atatttactg      3900
     aaatctttaa catgtaatcg aaagtataag tattctcatg aatgtttaaa agcaattcca      3960
     aataatcaga tactcgatga gttatgtgaa gatagagaca gcacaatgga agttgcatct      4020
     gttgtccaat atgataaatg aagactgcac catagcagaa gagacatgtt atggcggggg      4080
     tcgtatgtat gtgtagaagg aattacacaa atgattagtt tatatgtgta gaaggaatta      4140
     cacaaatgat aagtttatat gtgtagaagg aattacacaa aagataagtt agttatgtgt      4200
     aaaaggaact acacaaattt gtttggttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4260
     caatatgtta aaggaattac acgaatgtta tgatttatta gattaaaatt atgttacgaa      4320
     aatgtaatta tgctatgaca agaatgaatt ttaaactgat ttgaattgtg ttacataatg      4380
     aataagaata tcgaataaaa atgtattgaa ataccctttg aattctgaag cgttgtcact      4440
     tatgtggttg agttaagaca acacacgagg acgtgtatat tgtcaggaag gccg            4494
//
ID   Gypsy-30_DWil-LTR repbase;    DNA;    INV; 367 BP.
XX
AC   scaffold_181154;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DWil_;
KW   Gypsy-30_DWil-I; Gypsy-30_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-367
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181154; Positions 1825338 1825704.
XX
SQ   Sequence 367 BP; 96 A; 70 C; 102 G; 99 T; 0 other;
     tgtcgcataa tggacgtact ttggacactg tacgtgtctg tcacataatg aatatagttt        60
     gaccactgtg cttgccagag caagctgtgc aatgagtttg ggatattggg aatgcttctt       120
     agaatttgac tatagcgaag aatatgactg gcgcctaggt gccgtacgag tgaggcgaca       180
     gcgttgtcgc gctgtcgccg agtgtagtcc agcttggcgt ctaagaagaa gtagatcggt       240
     gcgtgatcga agaatgcgag tcagttgcgt tcggataatt gtatgcgtcg gttggaattc       300
     acttcactct taaagtttct gaaacaatat ggcagaccag cagatagaac taaatgaccc       360
     tgcgaca                                                                 367
//
ID   Gypsy-30_DYa-I repbase;    DNA;    INV; 6629 BP.
XX
AC   .
XX
DT   08-JAN-2012 (Rel. 17.09, Created)
DT   08-JAN-2012 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DYa_;
KW   Gypsy-30_DYa-LTR; Gypsy-30_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6629
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1846-1846 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2965-3387] - Reverse transcriptase
CC   Positions [4492-4968] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1065..2306
FT                 /product="Gypsy-30_DYa-I_2p"
FT                 /translation="MSDNVSRTLQQEIRQGFLEMMAMINEVVQPLKQTAAA
FT                 VQSMQQQAMQGDPSGGHEHAGARGCQEATGAYPKTRPEGQNPWTSPPKPPR
FT                 ASEVLAERNVGAGGYPGEQQRFQTECEARSGSTEGLRGPERREDSVRGVRI
FT                 EKWEIFFDGDQNKLAVEDFVFRVEYLQRQSRCSWDQVLGSFYQLMRGQAAE
FT                 WYWQYVKESPPQTWEDLKENLVARFRGIGGEFERRRALQDRRQQPGESVED
FT                 YFRAMRRLGNRLLAPIPEAEMIRIVKKGLTAEVARFVYALRVYSVDQLREE
FT                 CLEVEEAFMRRERDSRASYRAPAKFPSSGRQVEEVAMESSDGEAGEPEPYI
FT                 EEVSRQRISCWNCGQPDHGFRDCASSERKIFCYRCGKPEVITPNCPVCAGN
FT                 GRTSAGKVGDPRSKYRSNRQ"
FT   CDS           2848..5340
FT                 /product="Gypsy-30_DYa-I_1p"
FT                 /translation="MQEIVWAEVDKMLELGVIEVSESPWSNRTTVVRRPDK
FT                 NRFCLDARKLNNLTVKDAYPLPCIEGILSRIEQTYYISSVDLKFAFWQVEL
FT                 DPESRPYTAFTVAGRPLYQFAMMPFGLCNAAQRLCRLMDKVIPARLRSNVF
FT                 VYLDDLLIIAPDFETHLKYLRLVAECLKKANLTIGLKKSKFCYRALKYLGF
FT                 IIGGGTLRMDGDRIVAIQKIPEPKSVKELRSFLGTAGWYRRFIKDFATMAA
FT                 PLTDALKKGKNTRLVLNDEAKDAIQALKTALTSAPVLVHADFRRPFVVQCD
FT                 ASHYGVGAVLFQYDEEKNERPIAFFSAKLNKHQINYSVTEKECLAAVLAIE
FT                 KFRPYVELMQFTVITDHASLKWLMTMKDLSGRLARWSLRLQSFDFQIAHRK
FT                 GSENVVADTLSRCVEELKLDADDALGFATTEFESEEYKEIRDEILENQDRL
FT                 PDVRVEGNLVFKRSGFDRLEEEVEGGSWKLWIPASLTAGLIATAHDEPTSG
FT                 HGGVRKTLQRLQRQYYWPKMTTQVRDFVGQCIQCKESKAPNYRTQVGIGQE
FT                 VVTERPFQKLYIDFLGKYPRSKRGKAWIFVVADHFSKFTFLKAMNEATTSN
FT                 VIEFLVQEVFFKFGVPEVIHSDNGKQFTAKAFQEMMEAYGVQHMRTAVYSP
FT                 QSNAAERVNRTVLAAIRTYLEQDHRDWDAYLPEIEVAIRNSVHEATGVTPF
FT                 FAVFGQQMYLHGSCYKLARKLRSMTDHEVVALNSQNKRDIIRERISQHLHQ
FT                 AYERSSRQYNKRAREFHVKPGQEVFRRNFTLSDFGKNYNAKFARKFARCRI
FT                 RRPVGNNMFELEDLAGKPIGIYHAKDLRL"
XX
SQ   Sequence 6629 BP; 1751 A; 1563 C; 2072 G; 1243 T; 0 other;
     taatggcgcc caatgcttaa accaggaatg gggtggcgaa ggtcctctaa aaaggacatt        60
     cgagcccata cgcggaaaag tagataaaaa taaaaatcca gtgggggaat ggaatccacg       120
     tggtgccggc agaccaggtt ggaacgcgtg cgatggctta tgtcggctat ccaaaaagcc       180
     gaacataatt gctcgccgcg gaaagacctg ggatgctgga aaaaaataaa ccacaaagta       240
     attgttcata tttgtagtaa ttttgtcgtt gtactcacct aaagtgtaga gatcctccaa       300
     gcgaagggta tgtcgctagc ggcggatacc gccagctagt tttgcgaccc gttcggtgcc       360
     tggtggcgaa cggaggactc gcaatgggat gagtcggtag gagagtcttc tgctggttgc       420
     ggcgcgaatg tgcgcggggg aatggctggt ctccgggtgg cccatgggaa cacagggttc       480
     accatgcgat gcgcccggga cggccaaaga actggcaagc gcatccgcgg cgcaactgga       540
     catgaagcag agtagatatg tgagcgccct cgatgcccta tcttccagga agaagataga       600
     ggatccgatg gagctcgcca tggcatacaa ctcgatcgca gaggtagatg aaagacgcag       660
     gaaagcatgt ggaagttggc tccggttagg catcactcct tttcaccccc cccccccccc       720
     ccctttgttg tccaattgag ttcccgtttt ttggctttgt tgttttcgtc tagaaaagga       780
     aaagaaagcg tgtttagtgt aaggaacaga aattagcagg tagagtaggt tcatggttag       840
     cagatataac ttgcggtccg gagctgataa gatgacaact agaactcccc ccgccggaag       900
     ggcagcagct cagagcggaa gatggcacgg caggcggcgc agccggcgca gccggtgcag       960
     ccggcgataa ctgggaaatc tctcccccac ggggaatccc gagcgatatc gcgtcgacga      1020
     taaacgttgc ggtggctcag acgtacgaga cgcacagggc ggcgatgtcc gacaacgtca      1080
     gtcggacgtt gcaacaggag attcgccaag gcttcctcga gatgatggcg atgatcaacg      1140
     aggtggtcca gccgctgaag caaacggcag cagccgtgca gtcgatgcag cagcaggcga      1200
     tgcaaggcga ccccagtggt ggtcacgagc atgcaggagc acgaggatgc caggaggcga      1260
     cgggcgcata tcccaagacc cggccagagg gacagaatcc ttggacgtct ccacccaaac      1320
     ctccaagagc aagcgaagta ctcgcggaga ggaatgtcgg cgccggtgga tatccgggag      1380
     agcagcagcg tttccagacg gagtgtgagg ctagaagtgg tagcacggag ggtctccgag      1440
     gtcctgaaag gagagaagat tcggttagag gcgtcaggat cgagaagtgg gaaatcttct      1500
     tcgacggcga ccaaaataag ctcgccgtgg aagactttgt gttccgcgtg gaatacctgc      1560
     aacggcagtc tcggtgttcc tgggaccagg tgctgggtag cttctaccag ctgatgcgag      1620
     gccaggctgc agagtggtac tggcaatatg tcaaagagag ccctccgcag acatgggagg      1680
     acctcaagga gaacctggtg gcgaggttcc ggggcatcgg aggcgagttc gagcgcagac      1740
     gagcactcca agatcgacgg caacagccag gcgagtccgt cgaggattat ttccgagcga      1800
     tgcggcggct gggaaacaga ctgctggcac cgataccgga ggcggaaatg atccgcatag      1860
     ttaaaaaggg acttaccgcc gaggtcgccc ggtttgttta tgccctgagg gtgtacagcg      1920
     tggaccagct gcgagaggag tgcctcgaag tggaggaggc cttcatgagg cgggagcggg      1980
     acagccgagc ctcataccgc gcgccggcca agtttccgtc gagcggacga caggtggagg      2040
     aagtggcgat ggagtcatcc gacggcgaag cgggagagcc ggagccgtac atcgaggaag      2100
     tttccaggca gcgaattagt tgctggaact gcgggcagcc ggaccacgga ttccgtgact      2160
     gcgcatcgtc ggagcggaag atcttctgct accgctgcgg gaagccagag gtgatcacac      2220
     cgaactgccc ggtatgtgcg ggaaacggga ggacgagcgc cggaaaggtg ggagacccgc      2280
     gctcgaagta caggtccaac cgacagtaaa ccttccgccg aagccaccaa caattaaacc      2340
     taggtagaga gtaataaaat cgtcattaag aatagcaata agctgagata cttaccagcg      2400
     gaggaacgga tgcagaagta ccttgaggtt cggaaccggt aggtcgagta cacgttccgg      2460
     tagaatttaa gggagtggag aaggtactta ccttttacgt atgcccgtac ctggagcaag      2520
     agctatacct tgggatcgat ttctggagga aattcgcgtt ggcaccggct atcctcggag      2580
     agataccagc aacgaatccg aaggcgaacg tggaggaatt gtgggacgca acaaatccgt      2640
     ggctggatgg caaagccggt aaagagtctg taatcgagga gtggaacctg caagaagaag      2700
     acaaaaatcg gttagaagcg gtaaagaaag agttcctagc gttcgaggac gtcggtctgg      2760
     gtaagacatc ggtggagaca catcggatcc agctcgtgga aggcgcagag ccgtttaagg      2820
     atcggcatta tccacaatcg ccagcgatgc aggagattgt gtgggccgaa gtcgacaaaa      2880
     tgctggagct gggcgtgatc gaggtcagcg agagtccgtg gagtaaccgc acgacagtgg      2940
     tgcgaaggcc ggacaaaaat aggttctgct tagacgcacg gaagctgaac aacctcaccg      3000
     tgaaggatgc ttatccgctg ccatgcatcg agggaatcct gtccagaatc gagcagacct      3060
     actatatttc aagcgtcgac ttgaaattcg cattctggca ggtggagttg gatcctgaaa      3120
     gccgtccata tacagcgttt acggttgcgg ggaggccctt gtaccagttc gccatgatgc      3180
     cgtttggcct gtgcaatgcg gcgcagcggc tatgtcgact gatggacaag gtgattccag      3240
     cgcggttgag atcgaacgtc tttgtgtacc tggacgacct gctaatcatc gctccagact      3300
     tcgagaccca tctaaagtat ctccggttgg tagcggaatg cctgaaaaaa gcgaatttga      3360
     cgataggttt aaaaaaatca aaattttgct acagggcgtt gaaatacctc gggttcataa      3420
     tcggtggagg gacacttcgg atggatgggg acaggatcgt cgcaatccaa aagattccgg      3480
     agccgaaatc ggtgaaggag ttacgaagct tcctgggaac agcgggatgg taccgccggt      3540
     tcatcaagga cttcgcgacc atggcggccc cgctcaccga cgcactgaaa aaaggaaaga      3600
     acacccgatt agtgctgaac gacgaggcca aggacgcgat acaggctcta aagacggcgc      3660
     ttacctcggc tcctgtcttg gttcacgccg attttagaag gccgttcgtt gtccagtgcg      3720
     acgcgtcgca ctatggagtt ggagcagtcc tgttccaata cgacgaggaa aagaacgaac      3780
     gtccgattgc cttcttctcc gcaaagctaa acaaacatca gataaattat tctgtgacgg      3840
     agaaggagtg cttggcagcc gtacttgcca tcgaaaagtt ccggccctac gtggaactga      3900
     tgcagttcac ggtcatcacc gaccacgcca gtctgaagtg gctgatgacc atgaaagacc      3960
     ttagtgggcg cctggcacga tggtcactca ggttgcagag cttcgacttc cagatagcgc      4020
     accggaaggg atccgaaaac gttgtggccg acacgctgtc cagatgcgta gaggagctga      4080
     agctggatgc cgacgatgcc ctcgggttcg ccacgacgga gttcgaatct gaggagtaca      4140
     aggagattcg ggatgagatt ctggagaatc aggatcgact gccggatgtc cgagtggaag      4200
     ggaacctcgt cttcaaacgc agcggattcg acagattgga ggaggaagtc gaaggagggt      4260
     cttggaagct gtggatccca gcctcgctca cagctggcct gatcgcgacg gcccacgacg      4320
     aaccgacgtc aggacacgga ggcgtaagga agacgctgca gcgactccag cggcaatatt      4380
     actggccgaa gatgacgact caagtccgag actttgtggg gcaatgcatc caatgcaagg      4440
     agtcgaaggc tccaaattac cgcacacagg tcgggatagg gcaggaagtg gtgacgagag      4500
     gccattccag aaactctaca tagatttcct aggcaaatat ccaagatcca agcgaggaaa      4560
     ggcctggata tttgtagtag cagaccactt ctccaaattc acattcctga aggccatgaa      4620
     cgaagccaca acgtccaacg tcatcgagtt cctggtgcag gaggtgtttt tcaagtttgg      4680
     agtgccggag gtaatccact ccgacaatgg gaagcagttc actgccaaag cttttcagga      4740
     gatgatggag gcgtacgggg tccagcatat gcggacggca gtgtactcgc cgcaaagcaa      4800
     cgctgcagag cgggtaaacc ggacagtact ggccgcaatc cggacatatt tggagcagga      4860
     ccaccgggac tgggacgcat atctgccgga aatcgaagtc gcgataagga actctgtcca      4920
     cgaagcgaca ggcgtcacgc cgttcttcgc ggtattcggg cagcagatgt acctccacgg      4980
     cagctgctac aaactggcca ggaaactgcg gtcaatgacg gatcatgagg tagttgcgtt      5040
     gaactcgcag aacaagagag acatcatccg cgaacgtatc agccaacact tgcatcaggc      5100
     ctacgagcgg agcagccggc aatacaacaa gcgcgcccgt gagttccacg tgaaaccagg      5160
     ccaagaagtg ttccggcgta acttcaccct gagcgatttc gggaagaatt acaacgccaa      5220
     gttcgcccgg aagttcgcga gatgccgaat caggaggccg gtcgggaaca acatgttcga      5280
     gttggaggac ctggcgggga aacctattgg catctaccat gcgaaagacc tgcggctgta      5340
     agggaagaac gacacgctca agatagggac aaagcaggat gcttaccgtg ggtgtggcct      5400
     acgttggggt aacccaggag caaaggggca agggccgatc gccgggtgaa caccgcggag      5460
     cgtgtccgag ttttttgttt ccataatttg tttgtttacg tgttggtgtg gaatgctcgc      5520
     gaatattccc ctccctattc gattggcgaa ttttcgcgtg gtgttgcatt ctgacggtga      5580
     tcgatagccg cgggcgaaag aaatatcgtc tggaatgagc acctaaggcg aggttggcag      5640
     tcccaagagg agaaggggaa agtgggatgt atgtagagcg ccccctaccg tccacaccca      5700
     agaaagggga agtgtggatg gtatgtggag agaggagaac accgacgaag tgcatccaca      5760
     cacactaaga cgggaaatga gcactggcat tggccttgaa gtcggttctc gacctatgtg      5820
     aagggaaagg aggaagcaaa agaataggaa agggaaccgg cagagccgag cccataaata      5880
     gggcgaggtg accgccatgt gggccagagg aaatttggga atcggacgac ccgctgccgc      5940
     gaactaacta atctaacggc cgtgttttaa aatcggtggc gcacataaac gtgtgagtgc      6000
     ggtcggtcta ccggaggtga aagctccgag gaaacgttta gtgatgtttt ttttattgtt      6060
     ggtataggga aattagataa tttaacccga tccggagatc gacgggagca ggacgggagc      6120
     agaacaggaa gacccggcag ccggaagctt tctttagagc gccccctacc gtccacaccc      6180
     aagaaagggg aagtgtggat ggtatgtgga gagaggagaa caccgacgaa gtgcatccac      6240
     ccacactaag acgggaaatg agcactggca ttggccttga agtcggttct cgacctatgc      6300
     gaagggaaag gaggaagcaa aagaatagga aagggaaccg gcagagccga gcccataaat      6360
     agggcgaggt gaccgccatg tgggccagag gaaatttggg aatcggacga cccgctgccg      6420
     cgaactaact aaatctaacg gccgtatttt aaaatcggtg gcgcacataa acgtgtgagt      6480
     gcggtcggtc taccggaggt gaaagctccg aggaaacgtt tagtgatgtt ttttttattg      6540
     ttgtataggg aaattaagat aatttaaccc gatccggaga tcgacgggag caggacggaa      6600
     gcagaacagg aagacccggc agccggaag                                        6629
//
ID   Gypsy-30_DYa-LTR repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   08-JAN-2012 (Rel. 17.09, Created)
DT   08-JAN-2012 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_DYa_;
KW   Gypsy-30_DYa-I; Gypsy-30_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1266
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1847-1847 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1266 BP; 361 A; 229 C; 266 G; 410 T; 0 other;
     tgaaaaataa atgtgagtcc gttccgagag ggcatagaca ttatatttat atatctgggt        60
     tgcagagggt atacaggcat tttcttgacc tcgggatatc cacagtttgg acccggggag       120
     accttttctg gaacccgtgg tggattccaa cctgaaatcc cgccgaggac caagccaaac       180
     cgcccgggag aagctcggcc ggaaaaaaaa aaaaatttag aataattatt tatttataat       240
     tatttattta ttatttaatc cggcttattt attcgcatct atttatttat ttccatttat       300
     ttattaatcg ttatttattt atttatttaa cttatttatg tgcccgtgtt aaaattatgt       360
     aaaatattcg tccgtgtgta attatttatt tatttatttt agtggcgttt agcgtgccct       420
     aaacaaacac acgaatattt gtttgacaga cgaaaaaacc taaaacacgt aaaacgatga       480
     tcaaaaaaat tataaatatg atataaataa ccaataattt atgtataatt aaatcgcgcc       540
     gagtccaagc aaaattaaat ctaaatcttg agatacgacc tccgagaaga ccaggccgat       600
     cctgtgtagg ggtatggacc tttcgtaaat aaccacctga cccgtctcag cccctgatcc       660
     tccttggagc tccatgtagg caggaattct gaagtgaaat gagggtttat taattttatt       720
     aatttatata tatttatatg tcaatgcccg tgcagtagtt tcgcgtcttt gttgtcctct       780
     cccgctcttt cgtcgtcctt tttttttttt tttttgtatc gtatttgctt tggcccaggg       840
     cgatggaagc ctaaaatttt ggaaaatttg aaaaatgtta tttagtataa ttgaatattt       900
     aaataagtaa agattataac gatgaattgc tagagtgtat taattagggg gggaaagacg       960
     aacggatgag ccgataacct ggaggaagcc gatgaaccac atgccaggga gatcctcaaa      1020
     tgggaaatag acggatcctt ggtagggatg ggtgcgtcag ggtcctttcc atcgaagacc      1080
     caaatctgcg tcgtgtcgtc cggtattagt ccttcacttg tagtttctgt tgatgtttct      1140
     ttgttgtttt tgtggattcc atgccgagtg gaatttatgg tgcgacctgt gggcacaggg      1200
     gaagaatccg ccctgttgat gactggctag ccggccttgc cccatcgaaa tcagcaggcc      1260
     gtaaca                                                                 1266
//
ID   Gypsy-30_LMi-I repbase;    DNA;    INV; 5040 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5040
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(155..1345,1327..4959)
FT                 /product="Gypsy-30_LMi-I_1p"
FT                 /translation="MDTKPAVSQLHIRHPSVFSGDAGQDPNKWLKGFDRVA
FT                 KYNRWDHTMCLANVYFYLDGTAQQWFENNEDKLNDWETFQEELKKTFGDRQ
FT                 RQIRSAEEQLKNRAQRHGEPTQSYIQNVLALCNIVNPNMTEADKITHLMKG
FT                 IAEDMYQALLIKDVATTEEFIKWCQRIEEMQQRRVGRKKYDRLPNVVPMAV
FT                 VEDQHDFASLIRQIVREELQQFMAAGTIRPSEHQIMAMDVSPVSHEGADAA
FT                 EEEVFQTLAPVCPANRTRREEWRRPAMTYAAAAKRQPMNRPTRPQPTPPAT
FT                 MTPRRRTDVWRTEDNTPLCFHCGRPGHVVRYCRERRRVFDDYFAARRQPSE
FT                 QFYPRQSPADEFSRPMGRSPSPYPRRGRSPTRRSRSPSPYRGTSRSPSRRA
FT                 QENPPRPGKLSEATIYGGEAAADENPPWTTVAKMSGNLIDVIIDGQPVRAL
FT                 VDSGASFSVLSDNYRRTLKKTMFCDTGATVLKVANGKYVQPAGTCVARITI
FT                 NNRTQPFEFVVLTECSHNVILGWDFLQASQAIIDCGRSELQIEEVVPTGTR
FT                 NTEFSGKLFAVDNVTIPPLTMRRVAVTNTDERLNCEVLVDSKKFIRLTKEI
FT                 YIPAAIISITGGRGEIWITNCHEQSQLIPKGMCIGTAEPIQDGELNVINED
FT                 PCSAVSTDNTLEETNVELPIGPGLTKEQRQRVLAILRQFSGAFTPQQGKSQ
FT                 TKRPTIRHRINTGDHPPISQRSYRVSPAERRIIREEVEKMLHDDIIQPSES
FT                 PWSSPVVLVKKKDGTWRFCVDYRRLNKITKKDVYPLPRIDDTLDCLKGATY
FT                 FSTMDMQTGYWQIEVDEADREKTAFITPDGLYEFKVMPFGLCNAPATFERM
FT                 MDNLLRHLKWTTCLCYLDDIVVFSKTFEEHLSRLSTVLKCVQAAGLRLNPK
FT                 KCLFVAKEIKILGHLVNGDGVRPDPDKVRAVTEFPTPQHIRDVRSFLGLCS
FT                 YYRRFIKGFCNKARPLQELLQGDAKFYWDETKERAFRALKEALTSAPVLAL
FT                 YDENAETELHTDASGYGIGAVLVQVQEGAEKVIAYASRVLSKSEINYSTTE
FT                 KECLAVIWAINKFRPYLFGKPFTVVTDHHSLCWLTSLKDPSGRLARWALRL
FT                 QEYDVTVVFKNGRKHKDADCLSRNPLVEHNSMNEISALTELDDVTAEQRED
FT                 PALLKTIEALEKGEPTNGEFQLINGTLYKSNYDPLGPKWLLVVPAHLQPAI
FT                 LKYFHDAPISGHLGFVKTLDRIRRRYYWKGLYRSVKHYVSHCKECQRRKHV
FT                 PQLPPGHLVPIPPAAAPFHRVGIDLLGRFPKSTTGNRWIIVCTDYLTRYAV
FT                 TKPVPTAEAPEIAKFLVEDIILKHGAPRVMISDRGKVFQSKLVSEVMSRCD
FT                 IVHRMTTAYHPQTNGLTERFNKTLADMLSMYVDVEQKDWDTILPVVTFAYN
FT                 TARQDTTGFTPFFLLHGREAETTMDTLFPFQPDDTQDDYVKQLITRVEEAR
FT                 QLARIRTLDAQEKDRQRYNDKHRPVVYSPGDLVWIFTPVRKVGLSEKLLKR
FT                 YFGPYRVIRRLSDVTYEVEDYEPSSKRQKRRDIVHVLRMKPYYDPEEQVGD
FT                 NGFLFKDSKDGNVTDEATTGTSVVDNRGEGKDSLNCHTEDP"
XX
SQ   Sequence 5040 BP; 1445 A; 1234 C; 1282 G; 1079 T; 0 other;
     ttgtttggtg gaggcgccgg gtaccctgtg caacagctgc atcaccgtgg ctccgattag        60
     gcaacgtaaa agccgtcgct tacacggact ggaaccggaa tacaagggat acaccgagta       120
     catccttcca aaagtccgta tcatcagaag aaccatggac acgaaaccag cggtaagcca       180
     gctgcacatc agacacccgt cggtgttctc tggagacgct ggacaggacc ccaacaaatg       240
     gctaaaaggg ttcgaccgag tcgccaagta caacaggtgg gatcatacga tgtgcttggc       300
     caacgtttat ttctacctgg acggaacagc ccagcaatgg ttcgaaaaca acgaagacaa       360
     gttgaatgac tgggagacgt tccaggagga acttaagaag acgtttggag accgccagcg       420
     acaaatccgc tcggcggaag aacaactgaa gaaccgggcc caacgacatg gtgagccgac       480
     acagtcgtac atacagaatg ttttggccct gtgtaacata gtgaatccga acatgactga       540
     ggccgacaaa atcacgcacc tgatgaaggg tattgcagaa gacatgtacc aagctcttct       600
     gataaaagac gtcgctacga cagaagagtt catcaagtgg tgccagcgta ttgaagagat       660
     gcaacaaagg agggttggac gcaagaagta tgacagactc cccaatgtag tccctatggc       720
     cgttgtggaa gaccagcatg acttcgcttc tctcatacga caaattgtga gagaagaatt       780
     acaacagttc atggcagccg ggactattag accgagcgag catcagatta tggccatgga       840
     tgtaagccct gtaagtcacg agggagccga cgccgctgag gaagaggtat ttcagacatt       900
     agctcctgtc tgccccgcca atcgcacccg acgtgaagaa tggcgtcgcc ctgctatgac       960
     ttacgctgca gccgccaaac ggcagcccat gaaccggccg acgcggccac aaccaactcc      1020
     cccggcaact atgacgcccc gcagaagaac agacgtctgg aggacagaag acaacacacc      1080
     actgtgtttc cactgtgggc gccctggaca tgtcgtacgc tactgcagag agagaaggcg      1140
     agtattcgac gattattttg ccgcaagacg tcagccatca gagcagttct atcccaggca      1200
     atcacctgct gatgagttca gtcgacctat gggaagaagc ccatcgccgt accctagacg      1260
     aggtcgctcc ccgacgcgcc gcagccgttc accgtcgccg tacagaggta ccagccgctc      1320
     ccctagccgc cgcgcccagg aaaactaagc gaggcgacca tctacggagg tgaggccgcc      1380
     gcagatgaaa atcctccatg gacgacagtc gctaagatgt cgggaaatct catcgacgtc      1440
     ataatcgacg gccaacctgt ccgggcactt gttgattcag gagcgtcttt ctctgtattg      1500
     tcggataatt accgccgcac actaaagaag acaatgttct gtgatacggg ggcaactgtg      1560
     ctgaaggtcg cgaatggaaa gtacgtccag ccagcaggaa cttgtgtcgc aagaataacc      1620
     atcaacaaca ggacccagcc gtttgaattt gtcgtgttaa cagaatgtag tcacaatgtc      1680
     atcctcggat gggacttcct tcaggcatcc caagctatca ttgactgtgg aagatctgag      1740
     ctgcaaattg aagaagttgt tccgacgggt acacgtaata cagaattttc tgggaagtta      1800
     tttgccgttg acaatgtgac gatcccgccg ttgacgatga gaagagttgc agtcacaaac      1860
     acagatgagc gattaaactg tgaagtgctt gttgatagta aaaagtttat caggctcacc      1920
     aaagaaattt acataccagc ggctatcata agcattaccg gaggtcgagg agagatttgg      1980
     atcactaatt gtcacgagca gtcgcaactt atccccaaag gaatgtgtat cgggacagct      2040
     gaaccaatcc aggacggtga gctcaacgtc atcaacgaag acccatgctc tgctgttagt      2100
     acagacaaca cgctggagga aacaaatgtg gaactgccaa tagggcccgg actgaccaag      2160
     gaacaacgcc agcgggtgtt agctatacta cgtcaatttt cgggtgcatt cacacctcag      2220
     caggggaaaa gtcagacgaa acggcccacg ataaggcacc gtatcaatac tggggatcat      2280
     ccaccaatta gccagcgttc gtatagagtg tcgccagctg aaagacggat aattcgggag      2340
     gaagtggaga agatgttgca cgatgacatt attcaacctt cggagagtcc ttggtcgtct      2400
     ccggtggtcc ttgtaaagaa gaaggatggc acgtggcgat tctgtgtcga ctatcggcgg      2460
     ctgaacaaaa tcacaaagaa agatgtctac ccactgccgc gcattgacga caccttagac      2520
     tgcttgaaag gagctacata cttctcaact atggacatgc agacaggtta ctggcaaatc      2580
     gaggttgacg aagctgacag ggagaagacg gcttttatta cacctgacgg cctctatgaa      2640
     ttcaaagtaa tgccatttgg attatgtaat gctccggcca cattcgaacg catgatggac      2700
     aacttgcttc gacaccttaa gtggacgacg tgtctttgct atttagatga cattgtcgtt      2760
     ttctcgaaaa catttgaaga acatctgagt cgcctgtcaa ctgtgttgaa gtgtgttcag      2820
     gctgcaggac tccgcctcaa tccaaagaag tgcctcttcg tcgccaaaga gataaaaatc      2880
     ctggggcacc tagtcaacgg agatggtgtc cgtcctgatc cagataaagt aagggcagtc      2940
     acagaatttc caactcctca gcacattcgt gatgtgagaa gttttctcgg gctgtgctca      3000
     tactaccgac gtttcataaa aggattttgt aacaaggcac gtccattaca agaacttctg      3060
     cagggagacg ccaagtttta ctgggatgag acaaaagaaa gagctttccg ggcacttaag      3120
     gaggctctaa cttccgcacc agtgctagcc ttgtacgacg agaatgcgga aacggaactt      3180
     cacacagacg ccagtggtta tgggattggt gcagtgcttg tacaagttca ggaaggtgct      3240
     gaaaaagtga tagcctatgc atcaagagta ctctcaaagt ccgagataaa ctactctaca      3300
     actgagaaag aatgtctcgc agttatctgg gctatcaaca agttccggcc gtatttattc      3360
     ggcaaaccat tcaccgtcgt gacagaccac cattctttgt gttggctgac tagcttgaag      3420
     gatccatcag gtcgactagc aagatgggca ctaagactcc aagagtacga tgtcacagtg      3480
     gtattcaaga acgggcgcaa acacaaggat gccgactgcc tttcgaggaa tccattagtg      3540
     gaacacaaca gcatgaatga aatttcagcc ctcactgaat tagatgacgt tacagctgaa      3600
     cagagggaag atccagcact attaaaaacg atagaggcct tggagaaagg agaaccgacc      3660
     aatggagagt tccaacttat aaacggaaca ttgtataaga gcaactacga tccactgggc      3720
     cccaaatggc tactggtcgt tccagctcat ctccagccag ctattctcaa atatttccac      3780
     gatgctccaa tatccggtca tctgggattc gtgaagaccc tagacagaat cagacgcagg      3840
     tattactgga aaggtctcta ccgatctgtc aagcactatg tgagtcactg taaagagtgc      3900
     cagcgacgga agcatgtgcc gcaattacct ccagggcatc tcgtaccgat tccgccggca      3960
     gcagctccat tccaccgagt tgggatcgat cttttaggga ggttcccgaa gtcgacaacc      4020
     ggtaaccgat ggataatagt ctgcactgac tacctcacac gctacgctgt caccaaacct      4080
     gtgccgactg cagaagctcc agagatcgca aaattccttg tagaagacat tattttgaag      4140
     catggagcac cacgtgtcat gatatctgat cgtggaaaag tattccagtc aaaactagta      4200
     tcagaggtaa tgtcacggtg cgacattgtc cacagaatga caactgcata ccatcctcag      4260
     acaaatggtc ttacggaacg ttttaacaag acgttagccg atatgctgtc gatgtacgtc      4320
     gatgttgagc agaaggattg ggatacaatt ctgccagtcg tgacatttgc ttacaatacc      4380
     gcaagacaag acaccacagg cttcacgccg tttttcctgc tccatggccg tgaagctgag      4440
     acgacaatgg atacgctgtt cccgttccaa ccggacgaca ctcaggatga ctatgttaaa      4500
     cagctcatca ccagggtcga agaagcaaga cagctggctc gcatacggac actggacgcc      4560
     caggagaagg accgtcagcg gtataacgac aagcaccgac ctgttgtgta cagcccagga      4620
     gatctggtat ggatttttac ccctgtacgg aaggttggac tgtcagaaaa gttattgaag      4680
     cgatactttg gtccgtatcg tgtcatacgc cgcctgtcag acgtcacata cgaagttgag      4740
     gattatgagc cgtcgtcgaa acgacaaaaa cgaagagaca ttgttcacgt cctgcgcatg      4800
     aagccttact acgatcctga agagcaggta ggcgacaatg gcttcttgtt caaggactct      4860
     aaggacggta atgttactga tgaagccacg acaggaacgt ctgtcgtcga taatcgtgga      4920
     gaagggaagg attctctgaa ctgccataca gaggacccat gacaaggtca agatccagga      4980
     cattgcagct ggctccacag ggaacataac agcgggtcgc tgtttttcca ggagagggag      5040
//
ID   Gypsy-30_LMi-LTR repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-360
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 360 BP; 82 A; 85 C; 79 G; 113 T; 1 other;
     tattgccgcg agasaccacg tacaccgact gccggcgtgg cgcaggggat agcgtcaccg        60
     actgcggtgc tgaaggtcgc cggttcaatc ccgcccaccg gcaaaaattt atttctttgt       120
     aattaacaat tccagaatgt tctacatctt tcttatgttc acttgtaaat tctacttgtt       180
     tcttatgtta actgttcttc taatttctgg tacattctgt ctgtgtataa atagcagagc       240
     actctgcccg agaggcagtc agtgctgcgt gtatgttaag ttcgtaataa acgtgctttc       300
     agtataagtg ctgtgttcag ttgccttcga agtcaagcct gcttccattg caacgcgaca       360
//
ID   Gypsy-30_MoPha-I repbase;    DNA;    INV; 5137 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1163-1163 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..1162
FT                 /product="Gypsy-30_MoPha-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MSIPRSPVVTRSHASAAAEGDRADARDLERETGERRV
FT                 ETPXPPSGAAAPEFLLLLEELRRMREEQAQQQREFVEALRRLQSSRATENQ
FT                 LSLSDNIRSAGNVRGALRESGASMEAWGDMRAPVXIKLKPDTFDGTSPLRE
FT                 FLTQFSLIANANRWSESEKAVVLASCLRGKARSLLDSCPASEGSLSFVELK
FT                 SQLELRFGESELAQNFYTQFTNRKQSPGEDYATLGADLERLSRKAYSECTH
FT                 EVRDKIACSQFIAALSDGFVKRTLQVEGITSLRVAIERAKTLKFINQSCFP
FT                 EKFNGNFRAERKEVSGLKEKEKKNFKGSFKEGERKNKECWQCGATGHFRAE
FT                 CPAAGKTEN"
FT   CDS           1093..4479
FT                 /product="Gypsy-30_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RVLAVRGDRAFPRRMSCGGEDGKLNSVGLIGARSADG
FT                 VLAPFRARGKAVLVRRVGGMGANVRSHCCVKGSLNDKPCYFKIDTGSDVSV
FT                 LSAKMAASLEHERIKFCDLRYPTGEKVPIISRVKATVSLGKFCFVLPFYVA
FT                 EIVDECILGVDFLSKAGILDGLFESALGLTGSEVEERGLVCSRMQNCPLQL
FT                 SNSLSRILEESSRNLNSSQKQIFSDFLIEFCHVFSENIVAGNCNVLCHEIK
FT                 LCDSRPIKQVPRRIPLHLQSEVDKILEEMKVQKVIEESSSPWISPAVLVKK
FT                 KDGTIRFCVDFRKLNEVTKKDSYPLPRIDNILDCLTGNSWFCTIDLKSGYW
FT                 QVSLDPKDREKTAFSIGNGLWQFTVMPFGLCNAPATFERLMEKVLKGLISK
FT                 ICFVYLDDVIVFGKNFEEIMNNLKKVFIRLQNANLKVNPSKCVFMKREVKY
FT                 LGHVISAEGVATDPEKISSVKNWPLPKTRKQVRSFLGFCSYYRRFVKGFAT
FT                 LAKPLYKLSEENNKFVWSLECQEAFENLKHVLTCPPILSFPSEEGQFILDT
FT                 DASNHGIGAVLSQLQGEEERVIAYFSRVFSKVERNYCVTRRELLAVVDSIK
FT                 SFHHYLYGRKFLVRTDHVSLRWLMSFRNLEGQLARWLERLQQYDFDVFYRS
FT                 GKAHGNADGLSRRPCLEVPCRYCAKVEFNEGTSEEAIFGRIFFSEGTSQEW
FT                 RSAQLQDPVTSMIIRAKEAGSRPDWQELASEEVSLKIYWSHWDLLTMIDGV
FT                 LHKRWISPNLQKSIFQIVVPRQKVQEILEEAHDSPSGGHFGVNKTLQKIRK
FT                 HFYWASSKKDVERWCATCKVCIARKGPIGKGKSPLQTYNVGAPFERIQVDI
FT                 LGPLPISSSGNRYLLVIVDCFSKWPEAIPLKNKRASTVARSLVEQVFSRHG
FT                 IPLELHTDQGRNFESQLFREMSTLLGMKKTRTTPLHPQSDGQVERQHRTIL
FT                 DYLAKFVCENQKDWDRWIPLFLLAFRSSKQEATGASPAEIYLGQDLRLPLD
FT                 LLRGCPPSKKEEEEKDGNFVSRLRDRLDVVHCFARQRLRISSRNAKFWYDQ
FT                 RTRRVLYEPGQKVWFFNPRRVAGRAPKLQSSWEGPWKIKKKLGDVLYCIEK
FT                 SSRFKNKVVHANRLAPFQERN"
XX
SQ   Sequence 5137 BP; 1347 A; 983 C; 1384 G; 1420 T; 3 other;
     attttggggg ctcgtccggg atccgttcgt cggatcctgt gaagcgcgcg gattcaagtg        60
     ataagtgcgc ggagtgaaaa gacgagaaag agcggagaat tcgaaaatgt ccatccctcg       120
     ttcccctgtg gtgactcgat cccacgcttc tgccgctgcg gagggagaca gagcggacgc       180
     acgggatttg gagcgagaga cgggagagag gcgcgtcgag actcccgkgc ctccttcagg       240
     agcagcggcg ccagaattcc tgcttctwtt agaggaactc cggcggatgc gagaggagca       300
     ggcgcagcag cagcgggagt tcgtagaggc acttcgacgg ctgcagtctt cccgagcgac       360
     ggagaaccag ctaagtctct ccgataatat tcgttcggcc gggaacgtga ggggcgcgtt       420
     gcgtgagagc ggtgcgagca tggaggcgtg gggggacatg cgggcgcctg tckgtattaa       480
     attaaaaccg gacactttcg atggaacgtc cccattacgc gaatttttga cacaattttc       540
     gctcatcgcg aacgcgaatc gttggagtga gtcggagaag gcggtggttt tagcttcctg       600
     cttacggggg aaagcgcgtt cgttgctgga ctcctgcccc gcgagtgagg gctctctttc       660
     tttcgtggag cttaaatcgc aattggagct ccgttttggg gagagcgagc tcgcgcaaaa       720
     tttttatact caattcacga atcggaagca gagtccgggt gaggattacg cgacgttggg       780
     cgcggattta gagcgtcttt cccggaaagc gtattctgaa tgtacacatg aagtgcgcga       840
     caaaatcgct tgctcgcagt ttattgccgc gttgtcagac ggattcgtga aacgtaccct       900
     tcaggtggag gggataacat ctttaagagt cgcgattgaa cgggcgaaaa cgcttaaatt       960
     catcaatcaa agctgttttc cggaaaagtt taacggaaat ttccgcgcgg aacggaagga      1020
     agtttctggg ctaaaggaaa aagaaaagaa aaattttaag ggatcgttta aggaaggaga      1080
     acgtaaaaat aaagagtgtt ggcagtgcgg ggcgaccggg catttccgcg cagaatgtcc      1140
     tgcggcgggg aagacggaaa actgaattct gtcgggttga taggggctcg ctcggcagac      1200
     ggagttctag ccccgtttcg cgcgcgtggc aaggccgttc ttgtgcgacg ggtcgggggc      1260
     atgggcgcga acgtgcgcag ccactgctgc gtaaagggtt ctttgaatga taaaccgtgt      1320
     tactttaaaa ttgatacagg ctcggacgtt tcggttttaa gcgccaagat ggcggcttct      1380
     cttgagcatg agcgtataaa attttgtgat ttaagatatc ctactggaga aaaggtcccg      1440
     ataatttctc gtgtgaaagc cacagtttct ttaggcaaat tttgttttgt tttgcctttc      1500
     tatgtcgcgg agattgtcga tgagtgtata cttggagtgg attttctctc caaggcggga      1560
     attttggacg gattatttga gagcgccctc ggtttgacgg ggagcgaagt ggaggagcgc      1620
     gggcttgtct gctctcgaat gcagaactgc cctttgcagc tctccaactc tctttcgcgg      1680
     attcttgagg aaagttctcg gaatttgaat tcttctcaaa agcaaatatt ttctgatttc      1740
     ttgattgagt tttgtcatgt cttttccgaa aatattgttg ccgggaattg taatgtttta      1800
     tgtcatgaaa taaaattatg tgattctcgc cctattaagc aggtacctcg ccgaattccc      1860
     ctacatttac agtcggaagt agataaaatt ctggaggaga tgaaagttca aaaggtaata      1920
     gaggagtcta gcagtccttg gatttcccct gcagtcttgg ttaaaaagaa agacggaact      1980
     ataagatttt gtgtggattt tcgaaagcta aatgaggtaa cgaaaaagga ctcctaccca      2040
     cttccgagga ttgataacat tttagattgt ttgacgggga attcgtggtt ttgtaccatt      2100
     gatttaaaga gcggatattg gcaggtaagc ttagatccta aggatcgtga gaaaactgct      2160
     ttttctattg gaaatggttt atggcaattt acagttatgc cttttggtct ttgcaacgcc      2220
     cctgctacgt ttgagcgatt gatggaaaaa gtattgaaag gtttaatttc taaaatttgc      2280
     tttgtttatt tggatgatgt aattgtcttt ggaaaaaatt ttgaggaaat aatgaataat      2340
     ttaaaaaaag tttttattcg tttgcagaat gctaatttaa aagttaatcc cagtaaatgt      2400
     gtttttatga aaagagaagt aaaatatctt ggtcatgtta tttctgcaga gggggttgca      2460
     acagacccag aaaagatttc ttctgttaaa aattggccgc ttccaaaaac gcggaagcaa      2520
     gttcgaagtt ttctcggatt ttgttcgtat tatagacggt ttgttaaagg atttgcaact      2580
     ttagcaaaac cattgtataa attgtccgaa gagaataata aatttgtttg gtctcttgaa      2640
     tgtcaagagg catttgaaaa tttgaaacat gttttgactt gtcctccaat tttatctttt      2700
     ccttcggaag aaggtcagtt tattttagat accgatgcct cgaatcatgg catcggagcg      2760
     gtgctttctc aattacaggg agaagaggaa agggtcatcg cttatttcag ccgtgtattt      2820
     agcaaagtgg aacggaatta ttgtgtgacc cgtcgagagc tccttgcggt cgtggattca      2880
     ataaaatctt ttcatcacta cctctatgga cggaagttcc ttgtgagaac agaccatgtt      2940
     agtctccgat ggttgatgtc ttttcggaat ttggaagggc aattggccag atggttggaa      3000
     cgtcttcagc aatacgattt cgacgtcttc tatcgaagtg gaaaagcgca tggaaacgct      3060
     gacggacttt cgaggcgtcc atgtttggaa gtgccctgcc ggtattgtgc taaggtcgag      3120
     tttaatgaag ggacgtctga ggaagcaatc tttggtcgaa tatttttctc cgaaggaact      3180
     tctcaggaat ggcgctccgc tcagctacaa gatcccgtta cttctatgat aatacgggct      3240
     aaagaagctg gtagtcgacc ggattggcaa gaactagctt ccgaagaggt ttctttaaag      3300
     atttattggt cacattggga cttacttact atgatcgatg gtgtccttca taagaggtgg      3360
     atttctccga acttacagaa gagtattttt caaatcgtgg tccctcgaca gaaggtacag      3420
     gaaattctag aggaggccca tgactctcct tctggaggac atttcggcgt gaacaagacc      3480
     ctccagaaaa ttcgtaaaca tttttattgg gcttccagca aaaaggatgt ggagaggtgg      3540
     tgtgccacgt gtaaagtttg catcgcaagg aaaggcccca tcggaaaagg gaaatctcct      3600
     ttgcagactt acaatgtggg cgctcctttt gagaggatac aagtagatat ccttggcccc      3660
     ttaccgattt cttcttcggg gaataggtat ctcttagtaa tcgtggattg tttttccaaa      3720
     tggccagaag cgattcctct caaaaacaag agagctagta ctgtcgcaag atcattggtt      3780
     gagcaagtat tttctcgaca tggaattcct ttggagttac atactgatca aggaaggaat      3840
     ttcgaatctc aacttttccg ggaaatgtca actctattag gaatgaaaaa gacgcgaaca      3900
     acacctcttc atccgcagtc ggacggacaa gttgagcgtc agcatcgtac catcttggat      3960
     tatctggcaa aattcgtttg cgaaaatcag aaggattggg atcggtggat tcctttgttt      4020
     ttactagcgt ttcgttcttc gaagcaggag gctactggag cgtctccggc tgaaatatat      4080
     ctaggacagg atcttcgtct gcctttagat cttcttagag gatgtccccc ttctaaaaaa      4140
     gaagaagagg aaaaagatgg aaattttgtt tccagactca gagatagact cgatgtagtc      4200
     cattgtttcg cccgtcagcg tcttcgcatc agttcccgga atgcgaaatt ctggtatgat      4260
     caacgaacta ggcgagtgct ttatgagccg ggacaaaagg tctggttctt taatcctaga      4320
     cgagtggcag gaagggcccc gaaattgcag agttcttggg agggaccttg gaaaattaag      4380
     aaaaagcttg gagatgtttt atattgtata gagaaatctt cccgctttaa aaataaagtc      4440
     gttcatgcaa accgtttagc tccttttcag gaaagaaatt agtcttagaa tcttctttac      4500
     gaagccgaaa cgagcctgag cctgtacgcg agcgtgaagg gaggggaaga atgtttttgt      4560
     tttgttctaa agaaagagtt aaaactgttg atttttctgc gtttgtttgt tctttcgttt      4620
     tgtttcagtt tcattaaagt aagctgggaa gaagagagaa actgaatttt tgatctggga      4680
     tgttttctca agtctgcctc tcccacggtt tttgaccgtg gttttcccgt gggactttgg      4740
     gcaaatgccg aggcagagga cagagagctt taaaaagcgt tgggtccacg gaaattattt      4800
     ccccctctga tcctgaagag agaagtaaga agcgctcaag acccggcgcg gagaagcgag      4860
     aagtgctcaa ggctcaagat ggaagagcac gggcagcgga aaactggaat cgggcgtaag      4920
     agtctctgcg aaggagccta atcagctctt cgagggaaga cgcatgagag tttccagtca      4980
     agaggaggcg agctcggatg gacgtggccc attgtactcg ctgcaactgc acgtggaggg      5040
     caggaaatcg tccaggaatc ctgaggcgtc gactcagaga ggcgcgtcga attgccttcc      5100
     ggattgtcgg gacgacaatc tttaagaggg agggcag                               5137
//
ID   Gypsy-30_MoPha-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-240
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1194-1194 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 240 BP; 55 A; 53 C; 71 G; 60 T; 1 other;
     tgttacgtgc gctgcccggt atactctgcg atcgcgagtc agctgtcgga tcgggaatat        60
     cgatcggcgg cggcggtcag ctgtcaagag ccggggcaac ggggataaac aaggaataaa       120
     acagtctgag agcgacctcg agcttgtaaa gacgctttgt gttaattgca ataaagctgt       180
     tcgwttcttt cagttaaaga gagtgtgtct tattcctttt ccgcgagcgc gcgcgttaca       240
//
ID   Gypsy-30_MSe-I repbase;    DNA;    INV; 5121 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5121
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 907-907 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5121 BP; 1303 A; 1336 C; 1112 G; 1370 T; 0 other;
     tctggtgacc accgacgctc gctgcctcgt agtatttccg cgaggctcat ggaagcaaac        60
     gaagtcagag cgcattgaag acacgattgc ggttcaaatg tgggtgcatg gctgactcca       120
     ctgacgttca cgcctagcta caccgcgcga ccggctccct tgttggccta cgtgaccaac       180
     cgcacatggt tgggcgcgcg ctcatctcgt gcgccgacca tcctgcagca acccggacga       240
     gccaccgccg tgcctcgccc ctgtcacgac tagtgccaag tccaccgagc cgccgtcgcg       300
     cctcaccgca gtcaacttta gtgtcaagcc caacgagacg ccgtcgcgcc tcaccgcaga       360
     caacttcagc gtcaagtttg acgagccacc gccgtgcctc gcctgccgac acgtccagcg       420
     agctgcgccg tgcatcgctg ccgacacgtc caatgagccg ccgccgcgcc gtgactcgtt       480
     cacattcatc aatcaagtcc agtgagccct acttcgctac tgcagtaaca gttttaacag       540
     ggaagttgac attgtttaat ttttcattgt aaatgcccat tgtataaaat tataagtgtt       600
     agcattcaca acagggactt atatatacat atatttttaa ttgcaaaggc tgcatttaaa       660
     gtcacattaa atttaataac tttaattgta ttacatatgt ttatttttaa ttttaaaggc       720
     tgcattataa gcccaataga atattgtaag tgcctacacg ggtagctaat atttgttaca       780
     ttgtagaggt tgcattttaa aacctcattt aattgttcca ctgcctgtga ccctcattcc       840
     tgttttcctt ttttaattgt ttttcccctt tttctttttt tttttttgac tccatcatgt       900
     cgcaggagga tttgttgagg caagtcaggg agctgcagga agaattggcc aaacttcaaa       960
     caccagcagc ttccagtgat gttaaagcaa gtgtgtttgg catcaccatg aaattgccac      1020
     cattttggca tgacaagcca gcaatatggt ttgcccaggc cgaagctcaa tttgaaatag      1080
     cgggcatatc acaagattcc accaagtatg gccacattct ttctaaatta gacactcggg      1140
     ttgcaacaga gcttgaggac gttatcgaaa atcccccaac taaagataaa tataacaatt      1200
     tgaaatccga agtaataaag cgatttggca tttccagaga tcagcgtgtt cggcaactgc      1260
     tcagtgatga gccactgggg gaccgcaaac catcctcatt cttgcgccac ctgcaaactc      1320
     tcgctggtgc caagagtgat gaaaacataa ttagggagct gtggatgcgg aggctgccat      1380
     cggacatcca gcacatctta atggcacaaa tagatttgcc attgcagaag gtggcagaca      1440
     tagctgatgc tattatggat acacctgtca gtaagtctaa taattctgtt aatatggtca      1500
     cacctagtgc tcctgtggct gctcaatctg cagagataga gtctatcatg cacagcatca      1560
     aagccttaac taagaaggta gatgcactta ctcgagacaa ctcgaggagc acaagggcac      1620
     catcaaggcc tcgcttaaag tcgttctccc gcaccaacaa caatatgtgc tggtaccacc      1680
     aaaggtttgg tgtaaaagca accaaatgta tttcgccatg cagcagcgca ccggagccgg      1740
     gaaacgccag cagcagtcag taatggcggc ttctgactgc aatccatctg gccgcctttg      1800
     tgtgactgac atcacatcta agcgtcaatt ccttatagac acaggttccg acctgtgctg      1860
     ctatccccgc catttgttga aaggtagtct taagcccact aaatatgagg cacaggctgc      1920
     aaatggcagc tccattaaaa cctatggtaa tatcaacctt tgcttaaatt ttggactccg      1980
     acaaaaattt aattgggatt ttgtcattgc agatgtcagc tgtcctataa ttggttctga      2040
     ttttctggcc cattatcatc tcttgccaga ctgtcgccag cagagattag tagacgggat      2100
     ctccaagctg tcttcaccag ctaccgtagc atcagctgct caacccgcag tcaagtctgt      2160
     tattgccgga gactctgcct ttaagaaaat acttctggaa ttccctgact taacacgccc      2220
     tcctggtaag ccgagaattc ttaaacattg tacgacgcac cacattataa cgacagaggg      2280
     acccccagtt gcatgcaaat atcggcgact agcgcctcaa aagctatgcg ctgctaaaaa      2340
     ggaatttgag gagatggtcc gttgtgggac cgcccgtcct tccgacagcc catggtcttc      2400
     tgcattgcac ttggttccaa aagcagatgg tagtctacgt ccatgtggcg attatcgcgt      2460
     actaaacgca agaaccatcc cagaccgcta tccagtccgg catatagggg atgtcagcca      2520
     taacctggct aaatgctctg tttttagcac tatcgacctt gtgaaggcct accaacagat      2580
     tccggttgcg cctgatgaca tctgcaagac agccatcatc acgccattcg gcctttttga      2640
     gttcccttat atgacctttg ggttgcgaaa tgcgggacaa accttccagc gcttcattga      2700
     tggcgttata cgtggtttag atttttgctt tgcatatgtc gacgacatac tggtgttctc      2760
     gcacacacca gaggaacatg cgcagcacct tagaattctt ttcaaccgtt tatcagaatt      2820
     tggcattgtc attaacccat ctaagtgtgt ttttggggct gacactgtga cctttctggg      2880
     ctacaaaatt tcaaaagctg gaacctctcc tccacctgag agaattgaag ccctaaaaag      2940
     ttttcccctc cctaaaactg tggaaggact ccgcagattt ttggggatgg taaattttta      3000
     ccgcaaattt attcccaggg cagctgattt acaagcacct ctactggaag ttttggcatc      3060
     tagcaagtta aaaggagcca agccagtacc atggacaagt gaccttgaac tggcattcca      3120
     aaagtgtaaa gaccatttat ctaatgctac tcttttggca catcccgttt ctaactctaa      3180
     agcttggttt gttcacagat gcctcatcta ctcatgttgg cgcttgtcta caacagtttg      3240
     tagataatgc ctggcagccc attgctttct ttagcaaaaa gctcaccagc cgccaggcta      3300
     cctggccagc gtactaccgc gagttactgg gagtatatga agctgttcag cacttcagac      3360
     atattttgga ggcccaacat gtcaccatat atactgacca caagcccctt atttatgcat      3420
     tctcgcaacg acgcgagaag ctgcctcctg ttcaattaaa tcaattatct tttatttcgc      3480
     agtttaccac cgacttcgtg catgtgcagg gcacggacaa cggttgtcgc cgatgccttg      3540
     tcacgagtag acgccgtcca cgtcggtttt gactactccg ctctcgccaa agaccaggca      3600
     accgacgagg agttaaagca catgcaaagt gactcgtccc tggaactaaa gaaggtaacc      3660
     atacctggtt ctgatacgca aatcttttgc gatttatcaa ctgggaaacc ccggccgtat      3720
     ctcacaccat cttttcggcg actgcatttt gacaagctgc acaacctcag ccatccaggc      3780
     gcacggacct cggcgcgtat ggtcgccgac aggttcgttt ggccgggtat gaggcgagac      3840
     tgcagaatgt gggccagact gtgtccggcc tgccaacgct gcaaaatctc tagacatact      3900
     gccacgcctt taggaatctt taccacacct actagacgct ttcgccacgt gcacatagac      3960
     attattgggc ctctgccatc cagtagaggt taccagtatt gtctcacagc tgtggataga      4020
     ttcacccggt ggccagaagc atggcctatg gccaccgcga ccgcggagga atgcgcggaa      4080
     gttttcttta gagagtggat ggctcgttat ggtaccccat ctattgtgac tacagatcag      4140
     ggccgtcaat ttgaatcttc cctttttcag accctgatgc agctttgcgg cgccaaacgc      4200
     gtgcgcacga caagctacca tccgtgcgca aacgggttgg tagagcgaat gcaccggcag      4260
     ttgaaggctg ctctaatgtg ccatgaggac acatggcata aagctttacc tgtcgtgctc      4320
     ttgggcatgc gtgccgctct taaggaggac atacaagcat cgcccgccga gctagtgtat      4380
     ggagaacccc tatgcctgcc tggcgaattt attgttcctc cctcactttc tgatcgcact      4440
     gacagcgaat caaattttgc aactgaactg agacggcata tgtctgtttt aagaccgaca      4500
     cctgccactc ggcatagaaa gcagtctatt ttcgtttcca aggacctagc tactacgtcg      4560
     cacgttttct tacgtgacga cgccgtaagg acctctttga aaccgcccta cacgggcccc      4620
     ttcaaggtca tctccagaag agataaaacc attaaaattt cagttagaaa caaggacatc      4680
     gaggtgagtc tggaccgcgt caagccagcc tacatcgacg aggactccag ggaattgaaa      4740
     actgccgctc ccactgcctc agcaaatcct tgtgctctga gcgagcagaa taatgactct      4800
     gccgcactca aaccgcagca gtatacacgc tcaggtcgta aggtccgttt taaaacacct      4860
     tacgatgttt aatttttttt ttaccctttt tcccatgtat tacatgttat ttcttcctat      4920
     ttcccatgta atacatgttt cccttccctt taatttccca ggtattacat gttacccttt      4980
     ttcattaatt tgtcatgtgt aacatgttac tttttttcaa tttcccgtgt ggccacatgc      5040
     aacacgatac tttttctcct tgtttccatg taatattaca ttttttcgca aaaaaaagta      5100
     attgtctccg taggggggtg g                                                5121
//
ID   Gypsy-30_MSe-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-250
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 956-956 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 250 BP; 76 A; 57 C; 58 G; 59 T; 0 other;
     tgtggcgatc accaattcaa atcacgcgcc caagcctgcg ccgcgcacac ataggcgctc        60
     ggcgtaggct cgagctgcgt gagaaccccg cgtgacatac acatttcaag tagcgacatt       120
     tggaatgacg gatgtaaata aaaatagttt tctgtgttgt gactctggtt gtgacggatt       180
     aataaacatt ataaaatcga acacaaggtt ttattaaacg tggagaatac gataacccat       240
     gagctccaca                                                              250
//
ID   Gypsy-30_OrIn-I repbase;    DNA;    INV; 4755 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4755
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1571-1571 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           338..4753
FT                 /product="Gypsy-30_OrIn-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSQVEKLSDIGVVAEALKAASFKTIKSLYQLIFGEEG
FT                 GRTARKMVREFKGFKFEKDSEEYDAKVCEVSGSFSKSELILISSILRLDCD
FT                 DGCDDIAERICSELTDLTALRRRVTESDEDEESDESSEESDGNGKGEERGV
FT                 HSKNRRKKIRDAKKKREDDSSEESDGSSEESEEEDTDDDQLTYRHKKNRDA
FT                 KTRKNGGKSRPNPIFSMNFRDIEDSIRPFEGKKEYPVEKWISDFEEAADLF
FT                 EWPELHKFVFAKKSLRGLAKMYIQSERGITSWTRLKKALVGEFAKKLSSRE
FT                 LHRILDARKLQKDESLEEYLLVMKELASRGKIETDSLIQYIIDGIPGDEYA
FT                 KTVLYGASNLRELKIKMATFTKIMERRANHEQKNETAKTTSATVKTGGGKK
FT                 TAPDVPVGKPEKETVRCYKCGARGHKAFECKKQLKCFKCGKSGHKSFECTT
FT                 PNEASNIHCLTERLATTCKTVTVNGVTMNALIDTGSCVNVMSESAYRRVES
FT                 PSLNTTTKILSGFGGGNINLKGFFEGSVRIDDEIYPTTFYVVSTKMAYDLI
FT                 VGQDLLTKTDVVIDKFGIKFKKREELGRVVEPETEFLFNIELDTPLDIGNE
FT                 ASAEAKKIVTEAIMNYSPGKPKETEIKMSIVVKDEEPISCSPRRLPFTERK
FT                 IVEDQVEQWLKDGVVEYCESEYASPVVVTKKKDGSARICIDYRRINKVISK
FT                 DRYPLPLIEDLLDRLQDAKIFTTLDLKNGFFHVTVNESSRKYTGFVTHNGH
FT                 FQFRKMPFGLCNSPAVFQRYINFIFKELVNQGIALPFMDDVIIPAATEEEA
FT                 LHRLQKVVRVAQDFGLELNFKKCHFLKRRVDFLGHVIENGKILPSTEKVKA
FT                 VMNFPEPTTTKKVQSFLGLTGYFRKFIPFYSIIARPLSDLLKQDRRFHFGP
FT                 EQMNAFNELKRQLADKPVLNIYRQGGELELHTDACAEGYGAILFQRSIEDN
FT                 AFHPIYYMSKKTTDQEKKYSSYELEALAVIQAIKKFRVYLLGVRFKVITDC
FT                 SAFQKTMDKKEVSTRVARWFLDLQDYNFTVEHRVGSRMAHVDSLSRNPVYQ
FT                 IEVIEDDVTIVKAQKSDDRLRVIREIVKDKEFEDYFLKGEVLYKLEHGVEK
FT                 LVIPDGMATEVIMRIHGDGHLSAQKTEEILRQHYSVGDAKSRVVKTIACCV
FT                 PCILVNRKRGKQEGFLHPLEKEEVPFHTYHVDHLGPLETTNKRYKHILVVV
FT                 DSFSKYVWLYPTKSTTSEEVIKKLDFQKSLFGNPAVIVSDRGTAFTSREFE
FT                 EYCSQENIKHHKITTGLPRANGQVERINAIILPILTKLAVDEPSKWFKYVP
FT                 QVQQVINSSRSRSIAASPFEVMTGVVMRMKNRDDIVQVVEDEMRRHFYDQR
FT                 EELRLKAKEQIAKTQEENKRTYNLRRKRARKYQVGDLVAIRRTQPASKLKA
FT                 KFMGPYKITRVKGHDTYDVEKAGYHDGPTRTTSCAEYMKLWSSCIGEPPGE
FT                 VAEQNGR"
XX
SQ   Sequence 4755 BP; 1597 A; 837 C; 1175 G; 1146 T; 0 other;
     aattttgggg gctcgtccgg gatctcaatc taaattcaaa atcgtaaaat tgaggtgaaa        60
     aggaaaaaga aaccggtgat aagtgaagaa aactgaaaaa aaagaagact gaagaaaaaa       120
     gaaacggatt tcggaaaatc ggaaaagaac gccgtggaac attctagaat cgtcggggcc       180
     ggtcagccat cttgttgttt tgtttttgaa catctgtttt ttatgatttc tcaaaattta       240
     actttcaaaa aagaatattt tcggtgtgat ttatcaactt taactgactt ttaaataatt       300
     tttgtgagtt ttacgtgaat tatctaaatt ttctgaaatg tctcaagttg aaaaattgtc       360
     agacatcggt gtcgtcgccg aagctttaaa agcggcatcg tttaagacaa ttaaatcgct       420
     gtaccaactt atttttggag aagaaggagg acgtacggca cgtaagatgg tccgtgagtt       480
     taaagggttt aaatttgaga aagattcgga agaatacgac gctaaagttt gtgaagtcag       540
     cggaagtttt tcaaagagtg aactaattct catttcctcg atactcagac tcgattgtga       600
     tgatggatgt gatgacatcg cagaaagaat ctgttcagag ctaacggatt tgactgccct       660
     gcgtagaaga gtgaccgaat cagacgaaga tgaagaaagt gatgaatcca gtgaagaaag       720
     tgatggaaac ggaaaaggtg aagagcgagg tgttcactca aaaaaccgtc gcaagaagat       780
     tcgagacgcg aagaaaaaaa gagaagacga ctcaagcgaa gaaagtgatg gatccagtga       840
     ggaaagtgaa gaggaagaca cagatgacga tcagttgacg taccgtcaca aaaagaaccg       900
     tgatgctaag acaagaaaaa acggtggaaa atctaggcct aatcccatat tcagcatgaa       960
     ttttagggac atagaagact ccattagacc ttttgaagga aagaaagagt accctgtcga      1020
     gaagtggatc tcagacttcg aagaagctgc agatctattc gagtggcctg agctgcataa      1080
     gtttgtattc gctaaaaagt cgttgagagg gctggcgaaa atgtatatcc aaagcgaaag      1140
     gggtattact tcatggactc gtttgaagaa ggccctagtg ggagaatttg ctaagaagtt      1200
     gtcgagccgt gagcttcata gaattttaga cgccaggaag ctccagaaag atgaatcttt      1260
     agaggagtat ttgctggtga tgaaagaact agccagtcga ggaaagatag aaacggactc      1320
     gttaatccag tacatcatag atggcatccc aggtgatgaa tatgcgaaga ccgtcttgta      1380
     tggggcgagt aatctacggg agctaaagat aaaaatggcg acatttacaa agatcatgga      1440
     acgtcgtgcc aaccatgaac aaaagaatga aactgcgaag acaacgagcg cgacagtgaa      1500
     gaccggtggg ggtaaaaaga cagccccaga tgtcccagtt ggaaaacccg agaaggaaac      1560
     tgtgagatgc tacaaatgtg gcgccagagg ccacaaagcg ttcgaatgca aaaaacagct      1620
     gaaatgtttt aaatgcggga agtctggcca caagagcttc gaatgtacca ccccgaatga      1680
     ggcatccaac atccattgcc taacggagag actagccacg acttgtaaga ctgtaactgt      1740
     aaatggagtt acgatgaatg cgctgatcga cacagggagt tgtgttaacg tcatgtcgga      1800
     aagcgcatac cgtagagttg aatccccttc gttgaatacc acaacaaaga tactaagtgg      1860
     ttttggagga ggcaatatta acctcaaagg atttttcgaa gggtccgtga ggattgatga      1920
     tgaaatatac ccgaccacct tttatgtagt gtccactaaa atggcatatg atctcatagt      1980
     cggccaagat ttattgacaa aaacggacgt tgtaattgac aaatttggga taaaattcaa      2040
     gaagagagaa gaacttggac gtgtggtcga gccagagacc gaatttttat tcaacataga      2100
     gctggacacg cctttggata ttggtaacga agcctctgcg gaagcaaaga agatcgtgac      2160
     ggaagctatt atgaattatt ctccgggaaa accaaaagag acggaaataa aaatgtccat      2220
     agtggtgaaa gatgaggagc cgatatcctg ttcgcctaga agactcccgt ttacagaaag      2280
     gaaaatcgta gaagaccaag tggagcagtg gttaaaggac ggtgtggtgg agtactgcga      2340
     gtcggagtac gctagcccag tggtggtcac aaagaagaaa gacggttcag caaggatttg      2400
     tattgactat cggaggatta ataaagttat atcaaaagat agatatccgc ttccattaat      2460
     agaagactta cttgacaggt tgcaggatgc gaaaattttc actacacttg acctaaagaa      2520
     tggatttttt catgtaacgg tgaacgagag cagccgaaag tacaccggct ttgtgacgca      2580
     taatggacat ttccaattcc gtaagatgcc tttcggttta tgtaattcac cagcagtctt      2640
     tcaaagatac ataaacttca tattcaaaga attggttaac caaggtattg ctttaccatt      2700
     catggatgac gtgattatac ctgcagcgac ggaagaagaa gcgcttcacc ggcttcaaaa      2760
     agttgtaaga gtcgctcaag attttggatt agagttaaac ttcaagaaat gtcatttttt      2820
     aaagagaaga gttgactttt tgggacatgt tattgagaac ggcaaaatcc tcccatcaac      2880
     agaaaaagtc aaagcagtga tgaattttcc ggagccgacg acaaccaaaa aagtgcaaag      2940
     ctttcttggg ctgacgggtt attttcgtaa gttcatcccg ttttattcta tcatagccag      3000
     accattaagc gatttgctga agcaagaccg gcgttttcac tttggtcccg aacagatgaa      3060
     cgcttttaat gagctgaaga gacaacttgc tgataaaccc gttttgaata tctacagaca      3120
     gggaggtgag ctcgagctgc atacagatgc atgtgctgaa ggttatggag caattctatt      3180
     tcaaagatcg atcgaagaca acgcctttca ccctatttat tatatgagca agaaaacgac      3240
     ggatcaagag aaaaagtaca gcagttatga actagaggct ttggcagtaa ttcaagctat      3300
     aaagaaattt cgtgtttatc ttcttggagt tcgatttaaa gttattactg actgttcagc      3360
     atttcagaag acgatggata agaaagaggt ctcaacaaga gtcgcgagat ggtttcttga      3420
     cctacaggat tacaacttca cagtggagca tcgagttgga agtagaatgg ctcacgtcga      3480
     ttccttaagc cgcaatcctg tctatcaaat tgaagttatc gaagatgatg ttaccatagt      3540
     taaggcacag aaatcagatg atcgactgag agttatcaga gagatcgtga aagacaaaga      3600
     gtttgaggac tactttttga agggagaagt tttgtacaaa ttggaacacg gagtcgaaaa      3660
     attggtcatc cctgacggaa tggctaccga ggtgattatg agaatacatg gagatggtca      3720
     tctatctgcc caaaaaacgg aggaaatttt gagacaacat tatagcgtcg gtgacgctaa      3780
     aagtagagtt gttaaaacta tcgcgtgctg cgttccatgc attttagtca acaggaaacg      3840
     aggaaaacaa gagggattct tgcacccgct cgagaaggaa gaggtccctt ttcacacata      3900
     tcatgtggac catcttggac cattggaaac aaccaataaa cgatataaac atattttggt      3960
     cgtcgtagat tcgttctcga agtatgtatg gttatacccc acgaagtcta ccacatcgga      4020
     ggaggtgatt aaaaaactag actttcagaa gagtttgttt gggaaccctg cggtgattgt      4080
     aagtgataga ggaaccgcat tcacgtcgcg ggaatttgaa gaatattgca gccaagagaa      4140
     tatcaaacat cataaaataa ctacgggtct acctcgagcc aacggccaag tggagaggat      4200
     aaatgccata atattaccaa ttttgacgaa actagcagta gacgagccta gtaaatggtt      4260
     taagtatgta cctcaggtgc agcaagtgat caactcgtcc agaagtcgaa gcattgctgc      4320
     ttcacctttt gaagtgatga ccggagtcgt gatgcggatg aagaatcgag atgacatcgt      4380
     tcaagttgta gaagatgaga tgcggcggca cttctatgac caaagggaag aacttcgcct      4440
     taaggcaaaa gaacaaatcg cgaaaactca agaggaaaat aaaaggacgt acaacctgag      4500
     acgaaagcgt gcaaggaagt atcaagtagg agatttagtg gcgattcgga gaactcaacc      4560
     agcatccaag ttgaaggcta agttcatggg gccctacaag atcacacgag taaaaggaca      4620
     tgacacatac gacgtagaga aggcgggata ccacgacggt cctactcgga caacctcttg      4680
     tgcggaatac atgaaattat ggtcgagttg tataggagag ccacccggcg aagtggctga      4740
     gcagaatggc cgaga                                                       4755
//
ID   Gypsy-30_OrIn-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-292
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1581-1581 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 292 BP; 101 A; 22 C; 76 G; 93 T; 0 other;
     tgtgggagtt taagatgatt gtgttggcag aactgtataa gtatggcgga ggagtttagt        60
     tggtgttgag agaagagaga gagtgccgtg tgagagataa gtgtggatat ttttgtgaag       120
     aatctgagaa gtgaattgaa agaattgtga gactcgagtt tggtgaagaa aatagaagaa       180
     agcgaagagt taagttggaa tttatttgtg taaaaataaa ttaaataaac taaacaaata       240
     tcattgtaat ttcttttcct cttttaacct cactataaga ttggatccta ta               292
//
ID   Gypsy-30_SI-I repbase;    DNA;    INV; 5443 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_SI_;
KW   Gypsy-30_SI-LTR; Gypsy-30_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5443
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 450-450 (2014).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..1011
FT                 /product="Gypsy-30_SI-I_1p"
FT                 /translation="MPLAEWTEQLPRDQLELLAQTYQIETTGTLDELRYRV
FT                 TRHFLAMTNPNQSAGAPAPETASPSPPVTGNESHSHSKIMNQIRKWGCHFD
FT                 GRDPLSFLERVTELQEEYQYTDSQMKAGLPELLKGDALAWYRNEREAWETW
FT                 ADFTSALRRHYLPRRYQAKLMREIQERRQQPNEAYAKYATALLTMMRRAGG
FT                 FTQAEKVDRLYENLRAEYKLYVRMSDATDLADLADQAAEFEDISRARESEV
FT                 RAERKKVNTATSADVPPYDRATACWRCKQRGHSRFECRRPARKFCSQCGKD
FT                 GVLTKDCHPRAGNAAPAGDATAPRPEST"
FT   CDS           4338..5402
FT                 /product="Gypsy-30_SI-I_3p"
FT                 /translation="MEAVLDALLNVPGNDAEFDGLWKRMMETTPSPPGLFP
FT                 SPPSGEPARPRPEHRRGIXPAHDQQLAQRRDRLTGAGXAAPCKAGXXHPRA
FT                 AXGPDTGSKTAKRPTSXPAQKDHHQSLVCGSSDPPQPTQESXPHSWPSHPC
FT                 QATTARGDPRQPAPSGRRRLAPAERRKETLIALFGDPLSDLEEEPTIRAPA
FT                 TASCEPHRCPRPGQGTQHDRRRPTHGSTPSPTHRGRSSIHHCQPARGARKQ
FT                 RAPCSDAANAPPEEATAEFPTGVSPSAVTRGARTTATAPSNDGEATAPVQP
FT                 THRTGIRPDRPPIPVRVKDDLTVYVPYYAATVSRVYKVRLADRRFTLRFGR
FT                 DGQCHYVREFPA"
FT   CDS           1134..4241
FT                 /product="Gypsy-30_SI-I_2p"
FT                 /translation="MRIWPQEQEEAIHLADGTTATTPGRVKLRLRIAGRQL
FT                 EHTFQILPSLDSPMLIGTDLWARLQITIPPPPPQFRKTXPTAYSVTPGMVK
FT                 RTAQEERELQAFLATELAKFEEVRGPTDQASHQIRLKTDVPIKQRYRPRNP
FT                 AMQSIIDEEVRKMEEAGVIEPSTSAWSSPVVIVRKKDGKHRFCIDFRKVNE
FT                 VTERDAYPLPQIPATLDKLRGGRYLTTLDLQQGYWQIPLTPDSRPITAFTV
FT                 PGRGLMQFTVMPFGLHSAPATFQRLLDRILGPELEPHVFVYLDDIIVTSAT
FT                 FSDHLRHLQEVFRRLRKAKLRLNPEKCHFCLNELKYLGHIVDGKGIRTDPD
FT                 KVRAVAQWPTPTNVRQVRQFVGLASWYRRFTPSFSETAAPLTRLTRKNARW
FT                 TWGPDEEAAFRELKRALTSAPTLACPDFSRRFVLQTDASTHGLGAVLSQHF
FT                 DEGERVIAYASRSLNGAEKNYSATELECLAVVWGIRHMRGYLEGYEFTVVT
FT                 DHQALQWLRRLDSPTGRLGRWALELQQYTFDVRYRAGKLNRVADALSRLPA
FT                 VCSNQAHPACPWYRRQLLRVRERPGDFADYEIRHGRLYRRILHSTNFKDEP
FT                 AETQWKRCVPRDERGAVLARVHDNPAAGHLGIAKTIARAAQYYYWPGMFSD
FT                 IARHVRACANCQAHKSAQVRPAGLMHASHVEAPWEQVTTDLVGPLPRSTNG
FT                 AAWLLVLQDRFTKWVELVPLRRATATAIAQNITDRVVYRHGCPETLISDNG
FT                 TQFVAGHVRERLRDLGIRHRTAPVHAPHCNPVERTNKTVKTMIAQFVGRDH
FT                 RRWDQHIPALQFAYNTAVHDATGYTPAYLNCGRELETPPRDPDGRHAPTAA
FT                 PAANQRRLQEAYEVVRTNLARAFNRQEKYYNLRRRAWKPAIGDMVWKRDHP
FT                 LSNKGKAFNAKLAPKYVGPLEVRKIHSPVIVDLRDKRGKWHRHVHVQDLKP
FT                 GHRHEQTRGADDAETDHGEAADVEAADAEADDATADDTEVDAMTDDGGTDE
FT                 FGADDTDDDAAGKNDDPAGNGARADHARTA"
XX
SQ   Sequence 5443 BP; 1271 A; 1856 C; 1557 G; 745 T; 14 other;
     tggcgcccga acagggaccg ttttgaaacc gataatcgca cccggaaata aatgcctctc        60
     gccgagtgga ccgagcagct accgcgagac cagctcgagt tattagctca aacttatcag       120
     atagagacga ccggtacact tgacgagtta cgataccgcg tgacccgtca cttccttgcg       180
     atgaccaatc cgaaccagtc cgccggtgcg cccgcgccgg aaaccgcgag cccgtcccca       240
     ccggtcaccg gaaacgagtc tcactcacat agtaagatca tgaaccagat acgcaaatgg       300
     ggttgccact tcgacggtcg cgaccctctg tcgttcttgg agcgcgtaac ggaactacaa       360
     gaagaatatc agtacaccga cagccagatg aaggccggac tgccagaatt attgaagggg       420
     gatgccctgg cgtggtatcg aaatgagcga gaggcctggg aaacatgggc cgactttacc       480
     agcgccctgc gacggcacta tctgccgcgg cgataccaag ccaaactgat gcgcgagata       540
     caagagcgcc gacaacaacc caacgaggca tacgccaaat acgcgaccgc cctgcttacs       600
     atgatgcggc gcgccggggg tttcacccag gcggaaaagg tggaccgcct atacgagaac       660
     ctgcgggcgg aatacaaact atacgtgcgc atgagcgacg ctacggacct tgccgacctg       720
     gccgaccagg ccgccgaatt cgaagatatc tccagggccc gggagagtga ggttcgtgcc       780
     gagaggaaaa aagtcaacac cgctacatcc gccgacgtcc cgccctacga ccgcgcaacc       840
     gcctgctggc gctgtaagca gcgcggacac agccgattcg agtgcagaag acccgcacgc       900
     aaattttgct cgcagtgcgg gaaggacggc gtcctcacga aggactgtca ccctcgggcg       960
     ggaaacgccg caccggccgg ggacgcaacc gctcctcggc ccgagtccac ataaaataca      1020
     caccacgacc gcatgtaccg gtccgcctgg gacgacaccg gatctccgct ttactagaca      1080
     ccggggccga agtatctatc atcaaccgac aggtagccgg gtacgccaag gaaatgcgaa      1140
     tatggcctca ggaacaggaa gaggcaatcc acctggccga cggcaccact gccaccacgc      1200
     ccggccgcgt caaactccgc ctccgaatcg ccggacgtca gctcgaacac actttccaga      1260
     tccttccgtc cttagacagc ccgatgctca taggcaccga cctatgggcc cgactacaga      1320
     tcaccatacc cccgccacct ccccagttcc gaaaaacgcm acccacggcg tactcagtga      1380
     ccccgggcat ggtaaagcga accgcacaag aggagcgaga gctccaagcc ttcctggcca      1440
     cggagttggc caagttcgag gaggtgcgag gaccgaccga ccaggccagc caccagatcc      1500
     ggctgaaaac ggacgtacca atcaaacaac ggtaccgacc acgcaacccg gcgatgcaaa      1560
     gcatcatcga tgaagaggtc cgcaagatgg aagaagccgg tgtcatcgag ccatcgacca      1620
     gcgcgtggag ctccccggtg gtcatagtgc gaaagaagga cggaaaacac cgtttttgta      1680
     tcgacttccg gaaggtaaac gaagtcaccg agcgggatgc atacccgcta ccgcaaatcc      1740
     ccgccacact ggacaagctg cgcgggggcc ggtacctcac tacgctcgac ctgcagcaag      1800
     ggtattggca gatcccgctc acgcccgata gccggccaat caccgcattc accgttccgg      1860
     gccggggcct aatgcagttc accgtcatgc ctttcggact gcattcggct ccggcaacgt      1920
     tccaacgtct gctcgaccga atactgggcc cagaattaga accgcacgtg ttcgtctatt      1980
     tggacgacat catcgtgacc agcgcaacat tctccgacca tctgcggcac ctgcaggaag      2040
     tctttcggcg actacgcaaa gccaagctcc ggttgaatcc ggagaaatgc catttctgcc      2100
     tcaacgaact caaatacctg ggccacatcg tggatggcaa gggaatccgc accgaccccg      2160
     acaaggttcg cgccgtcgca cagtggccaa ccccgacaaa cgtacgacaa gtccgacaat      2220
     tcgtgggact cgcgtcatgg taccgccgct tcacacctag tttttccgaa accgccgcgc      2280
     cactcacccg cctcacgcga aagaacgccc gatggacgtg gggacccgac gaggaggccg      2340
     ctttccgcga gctcaagcgc gcactaacct ccgcacccac cctcgcgtgc ccagatttct      2400
     cgcgccggtt cgtcctccag acggacgcca gcacgcacgg tcttggcgcc gtcctctcgc      2460
     agcattttga cgagggggag cgcgtcatcg cgtacgccag ccggtcgctc aacggcgcgg      2520
     agaagaacta cagtgccacg gagctcgagt gcctggccgt ggtgtggggc atccggcaca      2580
     tgcgcggcta cctggaggga tacgaattta cggtcgtcac cgaccaccag gccctccagt      2640
     ggctgcgtcg cctggattcc cccaccggcc gactcggccg atgggcactc gagctccaac      2700
     agtacacgtt cgacgtccgg taccgcgcgg gaaaactgaa ccgggtcgcc gacgctctct      2760
     ccaggttacc ggccgtgtgc agtaaccaag cgcaccccgc gtgcccgtgg taccgccgcc      2820
     agctcctccg cgtacgggag cgaccggggg atttcgcgga ctacgaaatc cggcacggtc      2880
     gattataccg ccgcatactc cattcgacca actttaagga cgaacccgcc gagacacaat      2940
     ggaagcgatg cgtacctcgc gacgaaagag gggccgtgct ggcacgggta cacgacaacc      3000
     ctgccgccgg tcacctcggc atcgccaaaa ccattgcccg agccgcgcaa tattactact      3060
     ggccggggat gttctccgat atcgcgcgtc acgtacgggc gtgcgccaat tgccaggcgc      3120
     acaagagtgc ccaggtccga ccggccggac tgatgcacgc atcccacgtg gaggcgccct      3180
     gggaacaggt caccaccgat ctagtaggac ccctcccgcg gtccaccaac ggagccgctt      3240
     ggctgctggt cttgcaagac cgcttcacca agtgggtgga gttggtgccg ctgcgacgag      3300
     caaccgccac cgccatcgcc cagaacataa cggaccgcgt cgtctaccgc cacggttgcc      3360
     ccgagaccct gatctccgac aacgggacgc aattcgtggc ggggcacgtg cgcgaacggc      3420
     tgcgcgacct gggcatccgc caccggacgg ctccagtaca cgctcctcac tgcaaccccg      3480
     tcgagaggac caacaagacg gtcaaaacca tgatcgcaca attcgtaggc cgggatcacc      3540
     gccgctggga tcagcacatc ccggcgctgc aatttgcgta caataccgcc gtccacgatg      3600
     ccaccggcta cacgcccgcg tatctgaact gcgggcggga gctcgagacg ccaccacgag      3660
     acccagacgg gagacacgcg ccgacagccg ctccagccgc caaccagcgg cgactccagg      3720
     aggcatacga ggtggtccga acaaacctcg cccgggcctt caaccgtcaa gaaaaatatt      3780
     ataatttgag gagacgggca tggaaacccg ccatagggga catggtctgg aagagagacc      3840
     accccctctc gaacaagggc aaggcattta atgcgaagct ggcgcccaaa tacgtcggac      3900
     cgttggaagt ccgaaaaatc cattctccag tcatcgtcga cctacgggac aaacgcggta      3960
     agtggcaccg acacgtacat gtgcaggacc ttaagcctgg tcaccggcac gaacagaccc      4020
     gaggggcaga cgacgcagag acggaccatg gggaagcagc cgacgtagaa gcagccgacg      4080
     cggaagcaga cgacgcgacc gcagacgaca ccgaggtaga cgccatgacg gacgatggcg      4140
     ggaccgacga attcggagca gacgacaccg acgatgatgc tgcaggaaag aacgacgacc      4200
     cggccggcaa cggggctcgt gccgatcacg cccggacggc atgactgcct gaagggaagg      4260
     agctacctcc cccagcccag agcagtatat aagggggacc accgcaacca ggaacttgca      4320
     gaaagaccga atccgctatg gaagcagttc tggacgcact actcaacgta ccgggcaacg      4380
     acgccgagtt cgacggtctc tggaagagga tgatggagac gacgccgagc ccaccggggc      4440
     tgttcccgtc accacccagc ggcgaaccgg ccaggccscg accggaacat cgccgcggca      4500
     tcasgccagc ccacgaccaa cagctcgccc agcgtcgcga ccgactcacc ggcgccggct      4560
     magccgcccc gtgcaaagcc ggtcmcsgcc atccgcgcgc cgccscmggg cctgatacag      4620
     ggagcaaaac cgccaagcgc cccacttccc sgccggccca aaaagaccac caccagtcat      4680
     tggtgtgcgg atccagcgat cctccgcagc caacgcaaga aagcksgccg cactcatggc      4740
     cgagccatcc ctgccaggca acgacagcgc gaggcgaccc acggcaaccc gcgccatccg      4800
     gacgacgacg actcgcaccg gcagagcgac gaaaggagac tttgatcgcc ctcttcggcg      4860
     acccgttgtc cgacctagag gaggagccca cgatcagggc accagccacc gcgtcctgcg      4920
     agccccaccg ctgcccgcga ccaggccagg gcacacaaca cgaccgacga cggccgaccc      4980
     atgggtccac gccgtcaccg acgcaccgcg gaaggtcgtc gatccaccac tgccagccag      5040
     cacgaggggc acggaagcaa agggcaccat gcagtgacgc cgccaacgcg ccaccggagg      5100
     aggcgaccgc cgagttcccc accggcgtct cccccagcgc cgtgacacgg ggagccagga      5160
     ccaccgcaac cgcaccgagc aacgacgggg aggcgacagc accagtacag ccaacgcaca      5220
     gaaccggcat ccgcccagac cgaccgccta taccggtgcg cgtaaaggac gacctgacsg      5280
     tatatgtacc gtattacgcg gccacggtat cccgggtsta taaggtccgc ctcgccgacc      5340
     gccgcttcac gcttcgtttc ggacgggacg gccagtgcca ctacgtgcgg gaattcccgg      5400
     cgtagtggcc aaagttcgcc actcgcaaag gggggggggg tga                        5443
//
ID   Gypsy-30_SI-LTR repbase;    DNA;    INV; 1186 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_SI_;
KW   Gypsy-30_SI-LTR; Gypsy-30_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1186
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 451-451 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1186 BP; 243 A; 404 C; 273 G; 264 T; 2 other;
     tgtaacaaaa cgcccctcca cctcgcgcgc actgccactc cgctccgtcc acccgagcaa        60
     tacaccggca gaacgccacg tgcgcgcacc gagctaacct gccgtcgcga tcacgcggca       120
     gcacgcgcgc cgcccgtggc gttcggcaac gttcccactc cgggccagcc gaccgaacgc       180
     gcggattggt ccgcccaacc gtgcgttcgg atatataagc cggcagtggg aacgccgagt       240
     cagatcttcc cggtccgccg aacccgacag gtcgagaatc ctcgaccgca actccgactc       300
     ccaagaggac gagaatactc gcctcatcca gactcccctc gacgagaatc ctcgtcgtcc       360
     cggctagctg aggatcctcg gctaatcctg ctataccgaa taccgctccg cagccaatca       420
     cggcgagcat cctcgccgtg ctccgtagcc gagtatcctc ggcgaatcac cgtccacgac       480
     gagcatcctc gtcgagtccg caggctaggt atccctggcc aatcacctcc gtcctctccc       540
     tcagggaaga ttctcttgta acctaaagcc tcgtcagggc atccgcgctc tgacgagatc       600
     ttcgcctcac tttgcacgag gcggctcggg cgaggcgcgg aatcgccacc gtcgctccga       660
     tcccgcgttc cgcggctccc cgatcacccc ggacaccgtg tccgtttaaa accacgcgat       720
     tagtttaagt tagattatgt agctttacca ttccgtcagt tcttattatg ttaagttaga       780
     attattattt gtcgctttac cgtttcatcc gtattatcgc ggttatcata atttgattct       840
     tgtcttgtta ttcaatctcg gctctcgcct agcattttcg ttattccgcg cgkcgccgta       900
     cttttaccgt taccaaagct agcgwttcgg accgctcagc ggcgattggt cgtcgcgacc       960
     accgcgagcc aatcgcgtcc ccgcttaggc taagtccact tgtcgcgagg cgttcgagtc      1020
     aacaagctat ctgctacatg taaatatcac gtcttgaata aagatctagt gttttgtcac      1080
     taaattccga gtgcgattat tctaccgaac ccggccaatc cggcgagctt atccgcaacc      1140
     gtatcctgac tcctaccgca accgcacgaa aaccaccagc gttaca                     1186
//
ID   Gypsy-30_SiCu-I repbase;    DNA;    INV; 4469 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4469
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4974-4974 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..3896
FT                 /product="Gypsy-30_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MANPGVGVLKPFDSATDDFESWFETFEAYLIANNLDT
FT                 SGFNVREADELKKKQEMEKIIKNLFISSIGLTTYSLLKNLLSPDAPSSKKL
FT                 KELKTALMGHLKPAPKAIAERFKFMGRKQKREETVTQFLAELRMLAKHCKF
FT                 ADLDQRLRDQFIFGLQSEAAQKTLFTRDDNIALADVLSVAVAQESAEISTA
FT                 IVRNAQSHGESAVHKTSKFRSQQHKGQPQQNNKKNYNSKQQQGEGSHSGNK
FT                 NNHKDHKECPNCGSYKHVTAKECPHKEVICNNCHKKGHFARKCRSSRNANM
FT                 VSVDSIRNVNSLTSQVKQSRRDITINVTINGVPHEMELDTGCDDSILSEEF
FT                 WMGQLSAPNLTPSSRVFSTYTKQKFRPTGDLQATIAYKGQKKKINIAVSKG
FT                 NSLFGKDLLRAFKIDWNEIASQCKNVNSEKLNLDSLLREYEDVFRPPTAMD
FT                 RIKNFHAKIYLKDDAQPKFLKARPFHTQSEKVDKELLEMESLGVITKIEHS
FT                 EWASPLVVVPKPDGRIRITGDFKLTVNNQLCITQYPIAVPEDLFSSVSGGV
FT                 VFSKLDGSNAYHQIELEEQSKKFLVVNTHRGLYKYNVLPQGIASSPAIFQE
FT                 FMDIMLSGISRTGSYIDDCLSSGTSEQEHLLNLRQILDRMRQYNYKLSTKK
FT                 CEIMKKSVEFLGHRISQHGISTTQKKIEDIVNMPVPKEVSTLRSFLGLVNF
FT                 YGRFVHNLSEICEPLYKLTHQDEPWSWSKKCQRAFEEVKKRITTTPVLAHF
FT                 DPSLPIGLSCDASSVGLGNVLFHRYPDGSERPIAFASKTLSATEQRYSQIE
FT                 KEGYSIVFGIKRFFKFLCGRKFLLITDHKPLLSIFGPKSQLPVYAATRLHH
FT                 WSIFLSQFQYTVEYRKSDQHGNADALSRLPSSSQNDPDFEETETRVKQIVN
FT                 ENMEVLPVTAAAIRKASARDRALSRVLHYVATGWPARLSXEEQYLQPYFVR
FT                 RDELTIVQDVLFWGIRVIVPXALRKKILAQLHEVHFGIVRMKGLARQHIWF
FT                 PGIDEEIESVCRSCTHCQQHQNNPASTPLHPWQFPERPWQRLHMDLAGPLN
FT                 NKMWLIIVDAHSKWPEVYSMNQDTTTTAVLTKLLEVIARFGLPEQIVTDNG
FT                 RQFVSADFSKFCNENGIKHIRVSPYHPRSNGEAERFVQTFKKGMKSQDLPV
FT                 DLRLQRFLLQYRATPHXTXRVPPSYYREGSCVLFWIWSSQV"
XX
SQ   Sequence 4469 BP; 1341 A; 1083 C; 976 G; 1052 T; 17 other;
     catttggcga cgaggttttc agttatttta aagaaacttt cgtcagtttt cagtgaactt        60
     gttagtttca aagcccaaaa acagtaattt tggcattgtc agttgtatac ttacatacaa       120
     gtcgcaactc cggagcaagt gaagtgaagt ctcacgttgc cccaccgttc agttttgtcc       180
     agcacacaaa ctttcaacgc aatcagcttg tgcccagcac aacaaaaagt ctatttctct       240
     ttcagggaat ttcatccaga tcaacaacaa ggttttaaac cgaagacaag gctaacatgg       300
     ccaatccagg agtaggagtt ttgaagccat tcgacagtgc gacagacgac ttcgaatcat       360
     ggttcgaaac ttttgaagcc tacctcatag cgaataattt ggatacatcc gggttcaatg       420
     taagggaagc cgacgagttg aagaagaagc aggaaatgga gaagattatc aagaatctat       480
     tcatctcatc cattgggctc accacttatt cgctcctcaa gaacctgctt tcacctgacg       540
     ccccctccag taagaagtta aaggaattga agacagctct aatgggacac ctgaagccag       600
     cgcccaaggc cattgcagag cgcttcaaat tcatggggag gaagcagaaa agagaagaaa       660
     cagttacgca atttttagca gagctcagaa tgcttgcaaa acattgcaaa ttcgccgatc       720
     tggatcagcg cctcagagac cagttcatct ttggcctgca aagtgaagca gctcagaaga       780
     cgctcttcac tcgtgatgat aatatcgctc ttgcagacgt attatcagtg gccgtggctc       840
     aagaatcagc agaaatttct accgccatcg tccgcaacgc ccagtcccat ggagagtcag       900
     cagtacacaa aacttcgaag ttcaggtctc aacagcacaa gggtcagccc caacaaaaca       960
     acaagaagaa ctacaactcc aaacagcaac agggagaagg atcacactct ggtaacaaaa      1020
     acaatcacaa agatcataaa gaatgtccta attgtggttc gtacaagcat gttacagcca      1080
     aagagtgtcc ccacaaggaa gttatttgca ataactgcca taaaaagggc cattttgcaa      1140
     gaaaatgccg ctcatctcgg aatgccaaca tggtcagtgt ggattccatc cgtaacgtga      1200
     actcactcac ttcacaagtc aaacaaagcc gacgtgacat taccattaat gttaccatca      1260
     acggggtccc tcacgaaatg gagttagaca caggatgcga cgacagcatc ttatcagaag      1320
     aattttggat gggccagctc agcgcaccaa acctgacgcc atcatcacgt gtattcagca      1380
     catacacaaa gcagaaattc cgcccaacgg gagatttaca ggcaaccatt gcctacaagg      1440
     gtcaaaagaa gaaaattaac attgcagtca gtaagggaaa ctcgcttttt ggtaaagatc      1500
     tcttacgtgc attcaaaata gattggaatg aaattgcaag tcaatgcaaa aatgtaaatt      1560
     cggagaagct taatcttgac tccctcctcc gagaatatga agatgttttc aggccaccga      1620
     cggccatgga caggatcaag aattttcatg cgaaaatcta tctcaaggat gacgcccaac      1680
     caaagttcct caaggctcgc cccttccata ctcagtcgga aaaggtggac aaggagcttt      1740
     tggagatgga aagcctcggg gtcatcacga agatagaaca ctcagaatgg gcatccccac      1800
     ttgtagttgt acccaagccg gatggaagaa tccgcatcac aggtgacttt aaactgacag      1860
     tcaataatca gttatgtata acccaatacc cgatagcagt gccggaagat ctcttttcca      1920
     gcgttagtgg tggtgttgta ttctccaagc tcgacggctc caacgcctat catcaaatcg      1980
     agttggaaga gcagtccaag aagtttttag tagtcaacac ccaccgtggc ctgtacaagt      2040
     acaatgtact cccacaaggc attgccagct cacctgcaat tttccaagaa tttatggata      2100
     tcatgctaag tggaatatcc agaacaggtt cctacattga tgactgcttg tcctcgggaa      2160
     cctcagaaca ggagcacctc ctcaaccttc gccagatact tgaccgcatg cgtcaataca      2220
     actacaagct gagtacaaag aaatgtgaaa ttatgaagaa atcagtggaa ttccttggac      2280
     atcgcatctc ccaacacggg atatctacta cacagaagaa aatagaagat attgtcaaca      2340
     tgccggtccc aaaggaagtt tcaacgttac gttcttttct ggggttagtt aacttttacg      2400
     ggagatttgt tcataatctt tcagaaattt gcgagccgct ttacaagtta acccatcaag      2460
     acgagccctg gtcctggtcc aagaaatgtc agcgtgcatt tgaagaagtg aagaagagaa      2520
     taaccacaac accagttttg gcgcactttg acccgtcact gcccattggt ttaagctgtg      2580
     acgcgagctc tgtcggatta ggaaatgttt tgttccaccg ctatccagac ggttcggaac      2640
     gccccatcgc ctttgcctcc aagactctca gtgcaacgga gcaacggtac agccagatag      2700
     aaaaagaagg ctactccata gtttttggca tcaaaagatt cttcaagttc ctatgtggtc      2760
     gtaagttttt gctaattacc gatcataagc cattattatc aatttttgga ccaaagtccc      2820
     agttaccagt ttatgcagca acccgcctgc accactggag tatctttttg agccagttcc      2880
     agtacacggt cgaataccgt aagtcagatc agcacgggaa tgctgatgcc ctcagtcgtc      2940
     ttccgtcgtc atcacaaaat gatccggatt ttgaagaaac cgaaaccaga gtcaagcaaa      3000
     ttgtcaatga gaacatggaa gttctacccg tgacagcagc cgcaatacgg aaagcatccg      3060
     ctcgggaccg tgctttgtcc agagtcctgc attatgtcgc aaccggatgg ccagcccgtc      3120
     twtctgakga agaacagtac ctgcagccgt acttcgttcg tcgtgatgaa ttgacaatmg      3180
     tacaggatgt gctattttgg gggattcgtg tcatagtccc wamcgcccta cgtaagaaga      3240
     tactagctca actccatgaa gttcattttg gmatcgtgag aatgaagggg ttagctcgac      3300
     agcacatctg gtttcctgga attgatgaag aaatagagtc tgtgtgcagg tcatgtacac      3360
     attgtcaaca gcaccagaac aatccagcga gcactccgct ccatccgtgg cagtttcccg      3420
     aacgcccgtg gcagcgcctc catatggatc tagctggtcc gctcaacaac aaaatgtggc      3480
     tcattatagt ggacgcccac tcaaaatggc cagaagtgta ctcgatgaat caagacacta      3540
     ctacaacagc agttttaacg aagctcctag aagttattgc tcgctttggc ttacccgaac      3600
     agatcgttac tgataacggt cgccagttcg tttctgcaga tttcagtaag ttttgtaatg      3660
     aaaacggtat taagcatatc cgwgtttccc catatcaccc tagatccaat ggcgaggccg      3720
     aacgttttgt gcagaccttc aaaaagggca tgaaatctca agatttaccg gttgaccttc      3780
     gcctccagcg gttcctcctg caataccgag cgaccccgca ckccacamgc mgagtcccgc      3840
     cgagttatta cagggaagga agctgcgtac tattttggat ctggtcaagc caagtgtaga      3900
     agcagcagtc gcacgtgccc agtcacgtca agaagaaagc tacaacaaag ggacaaggca      3960
     gcgccatttc gagccaggtc aagaagtatg ggtgaaaacc tattcgaaak cggaagaaaa      4020
     gtggtcattt ggtcgcatta tccaagccct tggtcctctt acttatttgg tcgacgtcaa      4080
     cggaaagaat atgaagcgtc atgcmgatca aatacgagca gcggcgcagc gtcatcatga      4140
     cgttctggat gakgacacgc atgaagagcg tgaagaatcg cctcagcagc aaagccagcc      4200
     tgctagccca gctcgaagca cccgagatcc atcaacagca ccatgtagcc ctgttcagga      4260
     tccacccmtc agctctccgc ctcgtgttca gcaagaagta ccaagatacc ccagacgtat      4320
     cgcgaagcca gttcaacgct atggacatca gtaatttgtc acgtagtcat ccagtcatat      4380
     ctmgatgttt tcttttccat taaaataaaw tttgatgaaa tgttaagtwa attgctgatc      4440
     acgtaggctc aaatgtaaaa gggaggaaa                                        4469
//
ID   Gypsy-30_SiCu-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-319
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5107-5107 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 319 BP; 95 A; 75 C; 43 G; 106 T; 0 other;
     tgtagaatat ctgattattc taacatgcaa atatgttcaa ttagttcaat tgtcttatca        60
     acacgtgtct tgattctcca gacagcaaag atgcctgtct ccagctagta attgattacc       120
     atgctcttgc agcttgatcc tttacctaca ctagtagcga gacatcctcc tctcatcaga       180
     cctattcctg actctctagc taacacttta gcactcttat aattctctta actgttaata       240
     aatacctatg ctgaaggcaa agaattcacg catctaaaag catattttat tttgcatcaa       300
     gtgtggtaca tacaccaca                                                    319
//
ID   Gypsy-30_SiOr-I repbase;    DNA;    INV; 6179 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-6179
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 364-364 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1686
FT                 /product="Gypsy-30_SiOr-I_1p"
FT                 /translation="MDPNCLKDAELCYELSIRGLETTGNVDAKRKRLRGVL
FT                 NQQSSNRSLVSINNPFLFNDDVKLFLDSLLDLSNVIKNYAGVRNDPAFKRI
FT                 DTRLTHLSNRFNNFNIISDDDQQQADTLKLKLIDLEGEFVSKVSEFAPMTS
FT                 TPTQAVSMPLPSTSHSLHSANIFKWNVHFSGSSNESLVAFLERVELLRQAR
FT                 GLSKSELFASALDLFKDQAWTWFVSNKSRVSDWDSLVTKLKEDFLPYHYDI
FT                 DLLEEIRKRTQGSKERVTIYIAVMESLFRRLSNPPDEQTIVNQIRRNLLPH
FT                 YISHLALVDTSTIASLSTSCKRIEESLSLSDRYKPPPSRTSGLLEPDLSCG
FT                 SSSGNFSSKNVSTLSNNVTCWNCDRVGHAYGNCRSPRTIFCFSCGYKNKTR
FT                 PNCPKCTSKNLAGTSGGPRGATTGPFQNQQSGNQTTVRSANLPSTSQQGHN
FT                 TKTKDPKPKNQPQNN"
FT   CDS           1482..4898
FT                 /product="Gypsy-30_SiOr-I_2p"
FT                 /translation="NKTKLSQVYFKKLGRHQWWPQRSDHWSVSKSTVRKSN
FT                 HRPKRQFTKYVSTRSQYQNQRSQTKKPTSKQLKSQLTDWDNWLKIVRNFSF
FT                 SSTKNISPLLTQKVQDNRHYISISCFNHVFLALIDDGSNSSILGSDAYNII
FT                 NKFNLEVHSDRLFNVSAADGRSLNVVGYVYLPLTIGSQTLNLKVLVVPSLC
FT                 HELILGIDALKMFGFTIDYLNSRYFLHESEKQDICTINTITSFENLSSYQK
FT                 QSLENIINLFKGLSSKDKLGLTNLISHHIDTGTAKPFRQRQYPLSPAMQKF
FT                 LNEEIDEMLSLGIIEPSQSPWSSPLWLVKKKDGEYRVCFDGRKLNEITVKD
FT                 SYPLPLIDGILNKLRNAKYLTSIDLRKAFYQVPLEESSKQKTAFIVHGRGV
FT                 FNFKVMPFGLSNSPQTMMRLMNQVIDPSLEPFAFCYLDDIIVATPDFQTHQ
FT                 DILMKIYYRLKNANLTINLDKCEFCRPSLTYLGFLVDQNGLRTNPEKVDSI
FT                 LNFPVPKTTTQIKRFIGLVSYYRRFIKNFSSTSSAITDLLKGRKKGQPITW
FT                 TDXAEKAFIDIKNRLTTSPVLAAPDFNEPFVIQTDASDTGLGAVLYQRSDG
FT                 VEHPVAYASRTLNKCERKYTVTEKECLGVIFGIERFRSYVEGTHFTVETDH
FT                 ASLIWLKNMSNPAGRLARWSLKLAQFDFTIVHRKGSTMVVADALSRSNSEL
FT                 AVLNSSSFKPCKWYQTLFDNIQTDPDKYPTFCIKDNIIYKHISHKNILLNN
FT                 SYEWKIVVPTPNRTDVLKMYHDDPTAGHFGVSKTLSRILELYYWPKLRQDV
FT                 IKYVKRCSICAASKSSNFPRAGLMGSYRNINFPFQMISADLLGPYPRSKNG
FT                 NQYVLVIVDWFTKFVLVQPLAKATTKAVTKFIENQVFLIFGVPQIFCCDNG
FT                 SQFISKDFKKLMEEYKVQKIFYNARYHAQVNHTERVNRVIVTALRSYIHEN
FT                 HKTWDTNIFEIAQAIRLAKHDVTEYSPAFLTFGRNIPVSGDYYGNISENDQ
FT                 NIPDISEKIHLANDLQQLPKVYEEVRTRLKSAHVKNTKYYNLRKRDFQFHV
FT                 GDYVWKKNFQLSNAVNDFSAKLSPKFVPCIVDKVLSPLVYHLKDKHGNSLG
FT                 NFHIKDLKPNFVTDDHSDLDSDDLSDDQSSN"
XX
SQ   Sequence 6179 BP; 1769 A; 1072 C; 1108 G; 2228 T; 2 other;
     catttggcac ctgaaacgtg gggctcttgg cattttgtcg agactgcact ttggaagttt        60
     gctttggagt tgaatatttt gactgtattt agtcttctct caaattttag taaccagaat       120
     tttctctttc aaagaattct attatcatat taaattttga aattttctct cttgctattt       180
     tgttggctat attaattttt ttatctggct ttggcagttt ttttaatttt ttwaatattt       240
     catattacca cttctgatcg ttgattatcg taattttatc ttaactttta tcgtaaattt       300
     tgaactatgg atccaaattg tcttaaagat gccgaactat gctatgaact tagtattcgt       360
     ggtttagaaa ccaccgggaa cgttgatgct aaacgtaaac gtttacgcgg cgtattgaat       420
     caacaatctt caaatagaag tcttgtttcc attaacaacc cttttctttt taatgacgat       480
     gttaaactat ttctcgattc tcttcttgat ttgtcgaatg tgataaaaaa ttatgctgga       540
     gtcaggaatg accctgcttt taaacgtata gatactcgct tgactcattt atctaacaga       600
     tttaataatt ttaacattat ctctgacgac gatcagcaac aggctgatac gttaaaatta       660
     aaattgattg atttggaggg tgagtttgtg tcgaaggtat ctgagttcgc tccgatgact       720
     tctacaccaa ctcaagcagt ttcgatgcct ttaccatcta catctcatag tttacattcg       780
     gcaaatattt ttaaatggaa cgtccatttt tcgggttcaa gtaatgaatc attagttgct       840
     tttctggaga gagtagaact tttgcgacaa gctcgtggac tttctaaatc agaacttttt       900
     gcgtccgcat tggatctctt taaagaccaa gcatggactt ggtttgttag taataaaagt       960
     cgtgtttcgg attgggatag tttagtaact aaattaaagg aagattttct tccctatcat      1020
     tatgatatag atcttttgga ggaaattagg aaacgaactc agggttctaa agaacgtgtt      1080
     actatttata ttgcagttat ggagagctta tttagaagat tatcgaatcc tcctgatgag      1140
     cagactatag taaaccaaat aagacgtaat ttattgccac attatatttc acatttagct      1200
     ttggttgata ctagcactat tgccagttta tctactagtt gcaaacgtat tgaggaatca      1260
     ttatctttgt ctgatcgtta taaacctcca ccttctcgta cgtctggttt actggagcct      1320
     gatcttagct gtggttcatc ttcgggaaat ttcagtagta aaaatgttag tactctcagt      1380
     aacaatgtta cttgttggaa ttgtgatcgg gtaggacatg cttacggtaa ttgtcgtagt      1440
     ccgcgaacga tattttgttt ctcttgtggt tacaaaaata aaacaagacc aaattgtccc      1500
     aagtgtactt caaaaaactt ggccggcacc agtggtggcc ccagaggagc gaccactggt      1560
     ccgtttcaaa atcaacagtc cggaaatcaa accaccgtcc gaagcgccaa tttaccaagt      1620
     acgtctcaac aaggtcacaa taccaaaacc aaagatccca aaccaaaaaa ccaacctcaa      1680
     aacaattaaa atcacagtta actgattggg ataattggct caaaattgtg cgaaattttt      1740
     ctttttcttc aactaaaaat ataagcccct tgctgacgca aaaggttcaa gataatcgtc      1800
     attatatatc tatatcgtgt tttaatcatg tgtttctggc attaattgat gatggatcaa      1860
     atagttcaat tttgggtagc gatgcgtata atattattaa caaatttaat cttgaagttc      1920
     actctgatcg tttatttaac gtgtctgcag ccgacggtcg ttcattaaac gttgttggtt      1980
     atgtatattt accgttgact ataggtagtc agacgttaaa tcttaaagtt ttagttgtac      2040
     cgtcgttatg tcacgaactt atacttggca tagatgctct taaaatgttt ggttttacta      2100
     ttgattatct taattctaga tattttttgc atgagtctga aaagcaggat atttgtacca      2160
     ttaatactat tacttctttt gaaaatttat cttcttacca gaaacagtca cttgagaaca      2220
     taataaattt gtttaaaggg ctttcttcta aagacaaact tggtctcact aatttaatct      2280
     ctcatcatat cgatactggt acagctaagc ccttcaggca aagacagtat ccgttatcac      2340
     cggctatgca gaaattttta aatgaagaga ttgatgagat gctttctttg ggtattatcg      2400
     aaccttcaca atctccttgg tctagtccac tttggctagt caagaaaaag gatggcgaat      2460
     atagagtttg ttttgatggt cgtaaattaa atgaaattac cgttaaagat agttatcctt      2520
     tacctttgat cgacggaatt ttaaataaat taagaaacgc taaatatctg acttcgatag      2580
     accttcgtaa ggctttttat caggttcctt tggaagaaag ttctaaacaa aagactgctt      2640
     ttattgttca tggccggggt gtttttaatt ttaaggttat gccttttggt ttatctaatt      2700
     ctcctcaaac tatgatgaga ttgatgaatc aagttataga tcctagtttg gaaccatttg      2760
     ctttttgtta tcttgatgat attatcgtag ctactcctga ttttcaaacc catcaggata      2820
     ttttaatgaa aatttattat cggttgaaga atgctaattt aactattaat ttagacaagt      2880
     gtgaattttg tagaccatct cttacatatt taggttttct tgtagatcaa aatggtttaa      2940
     gaaccaaccc tgagaaggta gattctattt taaattttcc agttcctaaa actactactc      3000
     aaattaaacg ttttatcggc ttggtaagtt attaccgccg ttttatcaaa aattttagtt      3060
     caacttcttc cgctattact gatcttttga agggccgaaa aaagggtcag ccgataactt      3120
     ggactgacga sgcggaaaaa gcgttcattg atatcaaaaa tcgactcacc accagtccgg      3180
     tcttggctgc tccggatttt aatgagcctt ttgttatcca aacagacgct agtgacactg      3240
     gtcttggagc tgtgctctat cagaggtcag acggtgtaga acatccggta gcgtacgcaa      3300
     gccgcacttt aaacaaatgt gaacgtaaat acactgtaac ggagaaggaa tgtttgggag      3360
     tgatttttgg tatcgaacgt tttcgaagct acgttgaggg tactcatttt actgtagaaa      3420
     cggatcatgc ttcattaatt tggttgaaaa atatgagtaa tccagcggga agactggctc      3480
     ggtggtcttt aaaattagca cagtttgatt ttacaattgt tcataggaaa ggttctacga      3540
     tggtagtggc cgatgcctta tcgcgttcta attctgaatt agctgtacta aattcttcta      3600
     gttttaagcc ttgcaaatgg taccaaactc tttttgataa cattcagact gatccggaca      3660
     agtatcctac tttttgtatc aaagacaata ttatttataa acatatttct cataaaaata      3720
     ttttattgaa taattcatat gaatggaaaa ttgtagtacc gactccaaat cgtactgatg      3780
     tcttaaaaat gtaccacgat gatccaactg cgggtcactt tggagtatct aagacactat      3840
     cgcgtatcct agaattatat tattggccaa aattacggca agatgttatt aaatacgtaa      3900
     aaagatgtag catctgtgca gcaagtaaaa gttcaaattt tcctagagct ggtttaatgg      3960
     gttcttatcg taatataaat tttccatttc aaatgatttc cgctgattta ttaggcccgt      4020
     atcctagatc taagaatgga aatcagtatg tccttgttat tgttgattgg tttaccaagt      4080
     ttgttttagt tcaaccttta gctaaagcca ctactaaggc tgttaccaaa tttatcgaga      4140
     atcaagtatt tctaattttt ggtgttcctc agattttttg ttgtgataat ggttctcaat      4200
     ttattagtaa agattttaaa aagttaatgg aagaatacaa ggtacagaaa atattttata      4260
     atgctcgata tcatgctcag gttaatcata ctgagagagt taatcgagtt atagttaccg      4320
     ccttacgttc gtacattcat gaaaatcata aaacttggga tactaatatc tttgaaattg      4380
     cacaagctat tcgcttagct aaacacgatg ttactgaata ctctcccgct tttttaactt      4440
     ttggacgaaa tattccagtc tcaggagatt attatggtaa tatttcggaa aatgaccaga      4500
     atataccaga catttctgaa aagattcatt tagccaatga tttgcagcag ttacccaagg      4560
     tttatgagga ggtacgaacc aggttaaagt ccgctcatgt aaaaaacacc aaatattata      4620
     atttaaggaa aagagatttt caatttcatg ttggtgatta cgtttggaag aagaatttcc      4680
     aactttctaa cgctgtaaat gatttttctg caaaattaag tcctaaattc gtaccttgta      4740
     ttgtcgataa agttttatct cctcttgttt atcatttaaa agataaacat ggtaacagtc      4800
     ttggtaattt tcatattaaa gatttaaaac ctaatttcgt aactgatgac cattctgatt      4860
     tggattcgga cgacctttcc gacgatcaga gtagcaacta gattctcttg gattattttt      4920
     ttttcctctc tgtttatttt tcttctcttt cgtgaacttt cgttctttcc gctctacatg      4980
     gtgggcgagt tggatatacc tctgatatgg cgcgataacg tatcagtggt gtattcaaca      5040
     gggaagacta attatgtacg ggttccccgt gacggtaaaa gtccgtcaag agacagttgg      5100
     aagttgcctt cagctcttcc aactttttgt ttggcaccgc ttttgttctt aaagggcgcc      5160
     aaccttaagt tgacgaccct cgcggtgctt tttactgtaa gtgtccctta aatgtaatgg      5220
     cagttttacc gtatcgctac ctatcgttga aaggattcac gatctatgct acgggatgtt      5280
     tattaaaact gccctgttta aattttctat aacttgaatt attatatata tttctataac      5340
     ttagctttta aattttgact tttatcttgg ggggcgttga cgggtattgt gcttgtgttg      5400
     agttcgggtg ggacgaactg atcatcagta cgctttattt ctttatatat cgtgcccgtg      5460
     attagtttgg cgcgaaacga actggtcatg gatacgatag tctgattttt ccgattttcc      5520
     cctaagattt ctttctctct ctccgaaatg ttcaattttt tatatattgt gcccgtgatt      5580
     agtttggcgc gaaacgaact agccacggat acaatagtcg atttctccga tttttcccta      5640
     agctttcttt ctctttctct ctctctctct ctccgcaatt ttcaattatt tatatatctt      5700
     gtatccgtga ttgatttggc gcgaaacaag ccaatcatgg atacgatttg tttaattttt      5760
     tctctttgca aatttttaat tatcttatat attttgtgcc cgtgattgat ttggcgcgaa      5820
     acgagccaat catggataca atcagttcaa attttgactc tcgtttactt tatatatcta      5880
     cttcttgtac tcattgcgtt ttagtgcttg acgatttctt gcagtgcctt taaggttgaa      5940
     tttgttttat tatctttacg tttatcttat cattaacctg ttaacgtaat taatagtttc      6000
     ctagcctatg cagattcgac ctcgcacatt tgtgctggcg cccaatttta atattttgtc      6060
     taattatctg attatcttca ccttagtgac agttgcatct tggtctttca attgagtaat      6120
     atttctttga aaaatattca aacttgagtt ctcatatttt tctttccggg aaggaggag       6179
//
ID   Gypsy-30_SiOr-LTR repbase;    DNA;    INV; 2386 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-2386
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 398-398 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2386 BP; 701 A; 360 C; 380 G; 943 T; 2 other;
     tgtaacgaaa atttattttc gttgtgcttg ccttcggatt attttacttt taaacgaggt        60
     ttttacagtt tgcaatttta ctcgcattga cacttggccc tcgggtacca tactttttcc       120
     ccgttggatg ttgtgcgtcg gataaaawat atttttttat cgttctttaa taattctcaa       180
     tggtacttag caaagttgaa cttattattt ggattttaat atgtttttgt tcaacgatta       240
     taaattaagt tgctcttttc atggatcgtg ccatccatca cgagaatcca tggagtacca       300
     aattacacca aatggtacgg tgtacaaaat attgcagact gtaaaacacc gtagattgtt       360
     ttaggcaatt cataatacaa tagttgcaat ttttggttgc ctatctactg tttgagattc       420
     atttgtttat ttttaacaga ggttaagtga attttccttg ttatcagtgc taattgatta       480
     agatgcaatt gtttccttca tttttaaggt atgtaaggag tcgttaagta ttatttttat       540
     tagtagttga aattttatcg agaattagtt taacaacgca tgactatttt taattcgatc       600
     tgatatgtca agattttcgg gagaaggggt atggttaata taaaactaaa aattttaaaa       660
     ttttgccttc ttctcttctc atctctgctc tggtcatttg gtcattattc caatttgttt       720
     gagattttat tttttcttca agattgcacg ctgaaggtac gattttattt gattttacta       780
     tctggttcta tttaacaatt tattttcagc aattatttca gtgcttttta gtagccttaa       840
     tataaggcta cctattgttt ttttttcaat tgttttttat atatcatata gctacagttt       900
     tttctcataa gagcacgtgc ttagacgtat cgtaagatag ttttctactc tactatcttt       960
     cgagttataa ataactaatt attgtcttat tttttctacc tatatataat atacggagac      1020
     gccacaacgt ggaacaggaa cacagacagg tgttcgatac agagtcaggc tgtccgagag      1080
     aaccaactgc tgcaggagta cgatcaggaa gatcccagga aaagcaggcc tttggtaagt      1140
     aaagctttta taatttcatt attaacgact atagtcatct ttgaaaaaac tttacttgcc      1200
     agagggtggc ttctccatac ctggaccctg tggtggttat ttttctcgtt tgactcctcg      1260
     acagataaga tttttctaat tttttttctc gccttatctg tcaattaatt tcttattaat      1320
     aatatttttt tttataattt aaatcatcgt ctcttcgtat tgcatttttt ttggattttg      1380
     ttttttagca cgtgcaaagc aataaataat tgtctgatag aaccacggtt ttttttatcc      1440
     aatttttatt ataaaatcgt acctgtagtg tggtagtggt cttgatattt ttttttatta      1500
     aattgatttt acatttttta gagagagaga cagagagaga gaggtataca ttttatcttt      1560
     gcctagtttt ttaaaataat ttggactata ctcaattcta atttcattta agctgttata      1620
     gccagatttc aaaatttatt caattgaatt aaaattttat taaatttaat tattaatatt      1680
     aaattttcag tttgatagta gaattttgtc aattacttac ttattcattt tttactggtt      1740
     gttttttgag aagactaaca acttattggt taaataccaa tttgttttgt attttaaaat      1800
     tgatcaattt taatgttaat tttaaagtta attttaagtt gatttttagt agtagttaat      1860
     tagatttaat ttaaatattg ttaaggtaaa taactatacc tttgatttaa attttgattg      1920
     actctcattg tacattttat tggcaaccac agacagtcga cttggtactg tagaacacta      1980
     ccacataact gggtacttaa ccattatttg gaatagcata ctgctgttta ttatcttcta      2040
     ggaagatacg agaactgacc ctccccataa gtagctcacg cactgagact ggtggagtct      2100
     cacaagctct ccaagattag ccagacaatc acgctaccca ccagcggatg agtgcagcga      2160
     agagggcgag gcctttctcc caatcaactg aaccaaccga agcagatgaa aatttaagta      2220
     tcccagttat attgtatcta accttatata gtcaagactg tcacagccag cmaattgtat      2280
     tagtataagt tagaatatag gtagtatttt aaaaaaaaga acttgtttta tttaattcca      2340
     aagcatactt ctaaattcat caacatccag aattttgtgg gttata                     2386
//
ID   Gypsy-30_SpEx-I repbase;    DNA;    INV; 4711 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4711
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4099-4099 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4711 BP; 1406 A; 982 C; 1031 G; 1292 T; 0 other;
     tcagaagtgg gattggatgg ggctagaatt gagcaagaaa cactaaaatc ggatgcagaa        60
     aaattgctga ataacatgga aatgctttta tctcgtgttc tcgcagctca gccaacgcca       120
     actgtgagta ctaaccaggc aacacatttc ttaccgttta atccagacga accagactgt       180
     gacatatctg gttggtgcaa tattaccgaa gcaatcgttc ataataagcg cttagaagga       240
     atagacttgc tcatggctct tactacctct ttaaaaggac gagcggctgc ctgtatcact       300
     aagctaaact tagatgaaat atcctggagc gttgtcaaac agacactttt agctaaattt       360
     tcaaaaccaa agcttcttca ggactacttc gacgaaatat tgcgattcca aataggacct       420
     aaggagacag cttcggaagc cgctcttcgt ttatggaact taatcgaacg aatacctaag       480
     gctgtcatgc ctgaagaagt ggtgactgga ttcgttattt ctgtgctctg tcagaaggac       540
     agcctgataa gacgcgaatt gattgcgcac aatatcacaa ctcgcactca attgttccga       600
     attctggggg gcgtatctct taagcggcgt tcagacggtg tcgaagctaa cgaacctgag       660
     gcgaagcgtt ttcgtgctac cgaaaggttc actggcagat gtaacttttg cggaatatca       720
     ggacatcgtt ttgcggaatg ccgtaaacgt cgcgacgcac tgggatcagt cgagcctcga       780
     gatactccga gtacttcccg tccgttggag aggaagaacg atgtaacgtg ctacacttgt       840
     ggccaaatag gtcatgtgac gactaactgt cccgataaaa gaaacggtgg taaagctgcg       900
     gccaaggaag tccaccaatg tgaacaccgt ccttcaaggg gtaacttgac aacatcttcc       960
     ggtgagtctg taccttttct atttgacagc ggatcgtcct gttctcttgt gaaagaaggt      1020
     tatcgtggta aactcttggg tactgtgtgt aaaagtctcg tctatctgag cggcatcgga      1080
     ggcgatgata tacagtgtac gactcaaatt caggccgatg ttaaaattgg tgatcgcttg      1140
     attagtttac tctttcacgt agtttccgac aatattatat ctgaccctat aattattggt      1200
     agagatatct ttgatcaggg gttaagtgta gaaattgata atgataatct tgttatatac      1260
     tctaaacaac aatctaatct ttgtgtcgcg acatcagata tcccagattt ttcaaaaatt      1320
     gacacggatt tgcaggaacg ggataaagac atgttgattt ccatattgag caaatatgcg      1380
     aataacttta tcgagggtat acctaccaag cgtgtgaaga cgggagtatg tgaaattaaa      1440
     ttagtagatc cccatagagt agtgcagcga tgtccccata aaagagcacc tatagagaaa      1500
     caaataatta gggaacaggt tcaaaaacta ttagacgcag gggtgattcg agagagtaca      1560
     tctccatttg ctagtcctat cgttcttgtg aaaaagaagg ataattccga tagactttgt      1620
     gtagatttta gagagttaaa ttcaaatacc atacctgaac attatccctt acctcgaatc      1680
     gaggaacaaa tagaccagct tacgggtgcc aatttcttct cttcattgga tatggcttct      1740
     ggcttccacc agatccctat ccaccctgag tcagtggaga agacagcttt cgtgacaaac      1800
     gaagggcaat acgagtatct cgccatgccg tttggtttgc gaaatgctcc ttcagttttt      1860
     cagagatgca tcacaagggc tcttagtcat ttacaagata aaccacttat ctatatggat      1920
     gacgtgttat gtcattctgc taacatctcc gaaggactga agcgccttga cctcgtttta      1980
     ggtgcgttat cagaagccgg gtttacgttc aatacaaaga aatgtaaatt tatgaaacaa      2040
     cggattgact acctaggata ttctgtacaa tccggtgaga ttaggcccaa ttcacggaag      2100
     attcaggcat tagcagatgc cccggaacct aaatctgcta ctaatgttcg ccaatttctc      2160
     ggtctagcct cctactttcg gaaatttatt cctgagttca cacgtatagt cggtccacta      2220
     taccctctca caaaacttaa aggacgaatt acctggacta ccgaacatga aaaaataagg      2280
     cgcaaaatta taggtattct cacgtccgaa ccggtgctaa ctatattcga cccagaactt      2340
     ccggtggagc tacatacaga tgctagctca gaaggatatg gagcaatcct tctgcaaaag      2400
     aaaaaataat cttccacacg ttgttgagta ttatagccgg cgtacagcag acgcggaatc      2460
     tcgttatcat tcatacgagt tagaaacttt agcggtcgtc agagctgtag agcattttcg      2520
     ccattattta tatggtaggc gatttgttgt agttaccgac tgcaattcac tcaaggcgtc      2580
     gaaatcaaag aaagacctaa caccccgcgt ttaccgatgg tgggcttatt tacaagctta      2640
     cgatttcgac attgtgtacc gcgaaggaag taaaatggaa catgctgact acctgtcccg      2700
     aaatccactg tcagattctg ccgttcccat cactccagta aagcctaagc ctaaaactgt      2760
     caattatgtt gaactacatc aaggctggct gtcagttgaa cagaaacgcg acgcagaaat      2820
     tcaggatctt atcgcaaaac ataataataa tagctttccc gaaacagtag gccaaacgta      2880
     tgacgttaga gatggtatac tttataggaa gattactcgt aacaaagcgg tttcatggct      2940
     acccgtagtt ccacggtctc taatttggac actaattaac catgtccaca acgaaatgca      3000
     acatttaggc agggacaaaa ctctagacaa gctgtatgaa aagtattggt ttcccgatat      3060
     gtctaaatgt gtacgaaaat ttatagattc gtgtatcatt tgtaaggcat cgaaaggtcc      3120
     atcaggtgct cagcctgttc agcttcattc gattccaaaa gtatccgtgc cttggcacac      3180
     gattcacata gatttttcgg ggaagctgag cgggaagagt gaccgaaaag agtattgctc      3240
     tgtgataatc gatgccttta ctaaatacgt tttactcgaa catactttgt cagtcgattc      3300
     caagagtgca atatatgccg tacaaaaagc ggtgtgtctt tttggagccc cgaaaagaat      3360
     catcgcagat cagggccgtt gctacataag ctcagatttt aagagctttt gtcaagagca      3420
     taaaatagac ctccatttca tagcgactgg tacgagtaga gcaaacggcc aggttgaacg      3480
     ggtgatgcgt actcttaaaa gcctccttac tatcattgaa aacgacccta acaaagtgtg      3540
     gcgtgacgaa ttaggtaaca tccaacttgc tctcaatagt tctaaatctt ccgttaccaa      3600
     atactcaccg tcagaactaa tgtttggaat tcgttccaat tctttaggaa tgtgtaagtt      3660
     gaacgccgat aatatagatc atgaggttcg cttagattta gattcgataa gaactgatgc      3720
     atcagctaac atttgcaaag ctgctgaatc tgataccctt cggtttaatc gtggccgggc      3780
     cacaataaga cctttctcta aaggagactt tgtatttatt aaaaattgtg aacggaataa      3840
     aacgaaattg gataggaagt ttcgaggccc atatgttata gtagaagtac ttgaaaatga      3900
     tcgctatgaa cttaaaagct tagatgatga tggtgatgga tgcttagttc tcagagaact      3960
     tataaatact ctcacgagaa tttgcgcgca gtgccccagg gacatatcgg tttgctcgaa      4020
     atagctacta gtcttttaaa ttgtgaagag gccgagacgg cgtcggaaga tgaagaaaat      4080
     ataactaact caaatcatga caatgataac tctgacacct tgaccgtatg ctcaaacact      4140
     gtttccgccg attcgaggac gctcacagca ggctcagaca ctctcagtac atactcagat      4200
     cctgagactt gggaagtgtc gcacgaagct gaaattcaca cagaacagga tgattcataa      4260
     tcgtaggtaa gtggagtgac ctgtaagaat ctctttcctg ccaaatagtc agacgaacta      4320
     tgtcgtccga gtcagtatta gattgacttg tctctgtgca tttgttctat gagacgaaac      4380
     atgtcgtccg agtcagaacc ctttaagttg gctgacttgt tctggatgtt ttgcagattg      4440
     gtaagacgaa tattgtcgtc caggtcacat ccaccaaagg attgactcat gtaatagtac      4500
     caattgtgaa cagttaacct acatgctgtt tagtgacgag gctgtgtcat ccagcttaat      4560
     tgtttcgaga cactcgcctt aagtcttaag tatcatagcg cattgtgata attctaatta      4620
     gtcgtccgtc aggatgccga acggactgtg tacgactgca actcattgtt tcagagaatc      4680
     gcccgaggac ggtcgaatgt cagtccggcc g                                     4711
//
ID   Gypsy-30_SpEx-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-359
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4159-4159 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 359 BP; 95 A; 73 C; 78 G; 113 T; 0 other;
     tgacggcgca tccgtcaacg ttagaggtca ggttgatttt taagctgtta aaagtcagcc        60
     tagcgaagcg tcattgtcga tggttgtgag ggcggccatc ttgagacggt tgtttttcga       120
     gtcggcgccc gctcaccacg cttacgacga atcgctttga atttcattcg taattaaatt       180
     taatgtttaa gttagtatcg cgttgactgg actataaatt gatcattaga ctgtgtactt       240
     caattattaa accctgtgct gattaaataa ctgtgattat aataaggact tgtgattttg       300
     ccaactacct acatacatca cacaagatga gttctgatga aggccatcct cgccctaca        359
//
ID   Gypsy-30_TrNi-I repbase;    DNA;    INV; 4154 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4154
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 233-233 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..4140
FT                 /product="Gypsy-30_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MANNFVIEPYKQDGDISCFLERIEEYFEANDTIDEKK
FT                 KCSILLISLQEDVYRIIKNMCHPKVPKELSYKELQEKLKLRFEKRVSFFRK
FT                 RIEFDRMFQQEGEKVAEWYSRVREVAAGCNFTTTLEERVKDKFVTGMRPGA
FT                 IQERMCEQEVSQSVATLVEIALNKEMALKEVRAVHQVARGRQAKPSNSKQS
FT                 THKQAKKPEKETGERLKCIHCGKPNHNFSKCKYKSYKCKNCEKTGHLAVVC
FT                 KSKAQTHSVDTKEEEVSNNSIDIFTIQQNVAYVNYVSPISIQGYIENKQVQ
FT                 MELDTGAAISCLPERIYLSKFSHIKLQHSNIELKTYNGQILKPVGEINCKI
FT                 KLNDSEVKCKIMVVKNGCKILFGRDLIQKFKLDISKLLSVNCVQSTEEKLQ
FT                 SILKEYDTLFKNELGIIKGEEVTLELIDKDVKPIFHKPKPVPHAFKDQVEA
FT                 ELTRLEKEGVISKAETSQWGTPLVPVLKENNKIRLCANYKVTVNKHIKDVN
FT                 HPLPRIEDIFTALQGGTSFSKLDLRNAYNHLCLSKETSELLAWSTPKGIYR
FT                 VNRLPYGTKPASSIFQNKLEKVLLGAKGVVNFIDDVIVTGSNDEEHLENLK
FT                 EVLRRFKEVGIRLNKSKCEFMQPKIKYLGHYISKNGLSKDMSKVESIINAP
FT                 VPTNVAEVRSWLGMVNYYGKFINKVSMKLKPVYDLLQKNSKFYWTKECQKS
FT                 FDNIKKDIISDNVLIHYTRDLPLRLACDASQNGIGAVLSHVLPNGSDRPIS
FT                 FISRVYSKAEKGYSMIHKEALAIYWAVQKFYQYLVGRKFELLSDHKPLVAL
FT                 FGENKSLPQMAAGRLQRWSLYLSSFDYTFKYVKGIDNVKADCMSRLPLPSP
FT                 ILNDKKECDYINFIQDQNVIDLNLVRSETRKDPILSNVYNMIRYGFPTHVN
FT                 NEIFKPFINRQSELYIENGVIMWGYRVVIPKKLHNSVLQELHVSHEGIVRM
FT                 KNNARSYFWFPNIDSSIENFVKSCQVCMSARPEPQKSKQIPWPKANFPYER
FT                 VHADFLGPINGKMVLIIIDCYTKWPEAFIVKSLDAKTTVEKFRECFSRFGL
FT                 PKVVVTDNAATFCSKEFSEFINKNGIKHETSPPFHPATNGFAENAVKSFKS
FT                 SMQKCLNDVKNRNVSFETLMYRYLFHYRNSIHCVTNVSPAEAMFKRKLRSR
FT                 LDVLSTKKDVKQSNIGKREERFKEGEYVYCRDYRNPNKKKFVKCIIDEVLG
FT                 QRTYLCRVLNENLIWKRHLDQIIGSLPQDQQEDLNETSDCVPDNSLLQYDK
FT                 YPNNECQDKQIMSKDEYVVVNEPISEVVNETNDNSLPDNSNKIPEVSPNIS
FT                 NTYQNVICSSTHRNSPVNQPIVSVTNENQTVRRSERQRKAPQRLNL"
XX
SQ   Sequence 4154 BP; 1565 A; 543 C; 801 G; 1245 T; 0 other;
     aatggcgacg agtgaaaatt cgacaaattg gaaaaactaa ggaagtattc cattttcggt        60
     tgaaatatgg ccaacaattt cgtgatcgag ccttataaac aagatggcga catttcatgt       120
     tttttggaaa gaattgaaga atactttgaa gcaaatgaca caatagatga aaagaagaaa       180
     tgttcaatat tactcatcag tttgcaagaa gatgtctaca gaatcattaa aaacatgtgt       240
     catccaaagg tgccaaaaga attgtcatat aaagagctac aagaaaaatt aaaacttaga       300
     tttgagaaaa gagtatcatt tttcagaaag agaattgaat ttgacagaat gtttcaacaa       360
     gaaggagaga aagtggcaga gtggtattct agagtaagag aagtagctgc gggatgtaat       420
     ttcacaacca cgttggagga acgcgtaaag gacaaattcg tcactggaat gcgaccagga       480
     gcaattcaag agcgaatgtg cgagcaggaa gtgtcccagt cggtggcaac gttggtggaa       540
     atagccctca acaaagagat ggcattgaag gaggtccgag cagtgcatca agtagctcga       600
     ggtaggcaag ccaagcccag taatagcaag cagagcacgc acaagcaagc gaagaagccg       660
     gaaaaggaaa ccggagagcg gttgaaatgt attcattgcg gtaaacctaa tcataatttt       720
     tctaagtgca agtataagtc ctataagtgt aaaaattgtg agaagacagg tcatttagcg       780
     gttgtttgta agagcaaggc tcaaacccat agtgttgata ctaaagagga agaggttagc       840
     aacaacagta ttgatatttt tactattcag caaaatgtag catatgttaa ttatgtttca       900
     cctatttcaa ttcaaggtta cattgaaaat aaacaagtcc aaatggaatt ggacacaggc       960
     gctgcaattt catgtctacc tgaaagaatt tacttgtcaa aattttctca tattaagttg      1020
     caacattcca acattgagct gaaaacatat aatggtcaaa tattaaaacc ggtaggggaa      1080
     attaattgta aaattaaatt aaatgacagc gaagttaagt gcaaaataat ggtagtgaaa      1140
     aatggttgta aaattttatt tggtagagat ttaatacaga aattcaaatt agatatttct      1200
     aaacttttgt cagttaactg tgtacaaagt actgaggaaa aattgcagtc catattaaag      1260
     gaatatgata cactattcaa aaatgagtta ggcattatta aaggggaaga ggtaacatta      1320
     gaattaattg acaaagatgt aaaacctatt tttcataaac caaagccagt accccatgct      1380
     tttaaagacc aagttgaggc cgaactcacc agactagaaa aagaaggtgt tatttctaag      1440
     gcagaaacat cccagtgggg aacaccatta gtccctgttt taaaggaaaa taataaaata      1500
     aggttatgtg caaattacaa agttacagtt aataagcata ttaaagatgt taaccatcct      1560
     ttaccaagga ttgaggacat ttttactgcg ttacaaggtg gtacatcatt ctcaaaatta      1620
     gatttgagaa atgcatacaa tcatttatgt ttaagcaagg agactagtga acttttagca      1680
     tggtcaacac ctaaaggtat ttatcgagtt aatagattgc catatggtac aaaacctgcc      1740
     agttctattt ttcaaaataa acttgaaaaa gttttgttag gtgctaaagg tgtggtcaat      1800
     tttatcgatg atgtaatagt cacaggctcc aacgatgaag aacatttaga aaatttaaaa      1860
     gaggttttaa gaagattcaa ggaagtaggt attcgtttaa ataaaagtaa atgtgagttt      1920
     atgcaaccta aaattaaata tttaggtcat tatatttcta aaaatggatt atcaaaggat      1980
     atgtccaaag tggagtctat tataaatgca cctgttccta caaatgttgc agaagttcgt      2040
     tcttggctcg gtatggtaaa ttattatggt aaatttatta ataaggtatc aatgaaactt      2100
     aagcctgtat atgatttgtt acagaaaaat tctaaatttt attggactaa ggaatgtcaa      2160
     aagagttttg ataatattaa gaaggatatt atttcagata atgttttaat tcattatact      2220
     agagacttac ctttaagatt agcttgtgat gcttcacaaa atggtattgg agcagtttta      2280
     agtcatgtat taccaaatgg ttcagacaga ccaatcagtt tcatttctag agtgtattca      2340
     aaagcggaaa agggttattc tatgattcat aaagaagcct tagcaattta ttgggcagta      2400
     caaaagtttt atcaatattt agttgggcga aaatttgaat tgttatcgga tcacaaacca      2460
     ttggtagcct tatttgggga aaacaaaagt ttgcctcaaa tggctgcagg aagacttcaa      2520
     agatggtcat tgtatttgtc aagttttgat tacacattta aatatgttaa aggcatagat      2580
     aatgtgaaag ccgattgcat gtccagatta cctttaccat cacctatttt aaatgataag      2640
     aaggaatgtg attacataaa ttttatacaa gatcagaatg ttatagactt aaacttagtt      2700
     cgctctgaaa ctagaaaaga tccaattttg agtaatgttt acaacatgat aaggtatgga      2760
     tttcctacac atgttaataa cgaaattttt aaaccattca taaatagaca aagtgaactc      2820
     tatatagaaa atggagtaat catgtggggt tatcgtgtag taattcctaa aaagttgcat      2880
     aatagtgtat tacaagaact acatgtttcg catgaaggaa ttgtgagaat gaaaaacaat      2940
     gccagatctt acttttggtt tcctaatata gatagtagta ttgaaaattt tgtaaaatca      3000
     tgtcaagtat gtatgtcagc tagaccagaa cctcagaaat ctaaacagat tccatggcca      3060
     aaagctaatt ttccttatga aagagttcat gcagattttt tgggaccaat taatggtaaa      3120
     atggttttaa taataataga ttgttacact aagtggccag aggcatttat tgtaaaaagt      3180
     ttggatgcta aaacaacagt agaaaaattc agagaatgtt tcagtagatt tggattacct      3240
     aaagtagttg ttactgataa tgctgctaca ttttgttcaa aagaattttc ggaattcatt      3300
     aataaaaatg gcattaaaca tgaaacatca ccaccttttc atccagcaac taatggtttt      3360
     gcagaaaatg ctgtaaaaag ctttaaaagc tctatgcaga aatgtttaaa tgatgttaaa      3420
     aatagaaatg tatcatttga aactttaatg tatagatatt tatttcatta cagaaactca      3480
     attcattgtg ttactaatgt ttcaccagca gaagctatgt ttaaaagaaa actgagatct      3540
     agattagatg tattatctac taaaaaggat gttaagcaaa gtaatatagg gaagagagag      3600
     gaaagattta aagagggaga gtatgtttat tgtagagact atagaaatcc taataaaaag      3660
     aaatttgtta aatgtataat tgatgaggta ttgggacaaa gaacatacct atgtagagta      3720
     ttaaatgaaa atttaatttg gaaaagacat ttggatcaaa ttattggttc tttgcctcaa      3780
     gaccaacagg aggatttaaa tgaaactagt gattgtgtac cagataatag tttattgcag      3840
     tatgataagt atccaaataa tgagtgtcag gataaacaga taatgtcaaa agatgaatat      3900
     gttgttgtaa atgaaccaat ttcagaagtg gtaaatgaga caaatgataa tagtttgcct      3960
     gataattcta ataaaatacc tgaagttagt ccaaatattt caaatactta ccagaatgtt      4020
     atttgtagta gtactcaccg taattcacct gttaatcaac ctattgtatc tgttactaat      4080
     gaaaatcaaa ctgtaagacg ttcagagagg cagagaaaag cacctcaacg tttgaatttg      4140
     tagagggaga gtat                                                        4154
//
ID   Gypsy-30_TrNi-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-204
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 187-187 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 204 BP; 55 A; 33 C; 42 G; 74 T; 0 other;
     tgtcatgtat ttgattatta agtgttttcc aattttgtgt gtaagtcgga taggagtggc        60
     aacattacaa acttacttgt caattggcac tggtcaacca tgccgttgtg ttcgtaattg       120
     cgtgcaagag aaaattaaat gtgattacct cattactcac tgttttattg gaagttgttc       180
     catatgtaca cggcgtacac atta                                              204
//
ID   Gypsy-30_TrVa-I repbase;    DNA;    INV; 4531 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4531
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 275-275 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4490
FT                 /product="Gypsy-30_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MALSVNIPQALQVTGNLSNNWKTFRQNFEIFILASKS
FT                 SNEEDAVKVAMFLNVIGQDGVDLYNSFNMPADKKNVLNEVLSTFEAYASPK
FT                 KNVTFERYVFNNTNQAEGESTDQYITKLKNLAKTCEFGDLQESLIKDRLVC
FT                 GIRNSAIREALLRIQDLDLTKAIMHCKSAELSKVQASHMSNGRSSKTSEDD
FT                 LLPIDSISRKTSKHQSKQTYKSAYRSKNFEPKKHSNVSSKNRISECIYCGY
FT                 EHAPKKCPAFGTKCSKCKKPNHYASVCKSSSSVHHLNEISDSDSSDTDTSE
FT                 IAFLNEVKSLPINSVGCGKASSNEWXQNIFIQNSCINFKLDPGASVNTISN
FT                 NVFKKLNYPGELKPATKYLQVFGGNIIKPXGEIVLNTSVKDMQSKLKFSVV
FT                 KADTTPILGLQACVNLNLVHRVESIATSKADFEKENFINQNLASFNGLGKI
FT                 PGEVKITVVKNASLPNHPPRRIPSSLKRNFKKALDRLVKKKIIVKVNKITN
FT                 NHCINHLVVVEKENGSLRFCLDPQELNKQIVTKHHLIPTVSEISERLQHNK
FT                 YFTVFDLKDGYHQLQLDEESSNLCCFSTPFGIFKYVRLPFGLTCSSEIFQN
FT                 SMEEKFGIIPNVLAFQDDIIIYAKTEEEHDRAVRAVLRRARELNIKFNLNK
FT                 LQYKKPSVKYVGFIYDENGRHIDKDRIEALLAVEPPNSKKKLQKCLGMFNY
FT                 VRDFIPNMSTITAPLRDLLKDNVQFQWLHTHEEAFKKLKTLVVNSPVLANF
FT                 DPNLPVEIQSDASQDGLGCVLMQNQRPVAFASASLTSAEKNYSQSEKELRA
FT                 IDFACNKFHNYVYGYDILVKTDHKPLVPLMNNPVNKIGSSVLRRLRLKLFK
FT                 YKLTVEYLPGKQMLIADLLSRSFLKCVSKDDPESCEIVHSIVKYLPMSEQR
FT                 REQFVLETNKDPELKALKDCYMKGWPEHRKLLPEIIKWAWPTRHNFYVDSN
FT                 LVFFNDRLCVPLALRKTILDLLHKGHNGRDKTVAKAQQVYHWRNLYQDISK
FT                 SVAECFICQKHQPMKSKATMVLPEISNFRFETVAVDILQTMGNSYLILIDT
FT                 FSKWLEICPIKRKTAKAVVDKLLTVFACHGIPMKIHADNVPFNAEEFINFT
FT                 KKYDIELIKCSPYYHQGNGLAEKACHVAEKILLKSKDQNVDFRELLLEYRN
FT                 TPLSKLKASPSQILMSRNMRTLLPVTTNFLTPKVIENVREQLVENQRKSAL
FT                 VYNKTAKRKPDVFEEGEKVLVKTAKNESWLPATVVEKHKTPRSYIIRKQNG
FT                 NLCRRNEVHLKPFCGRKEDVINEEPFYDFTLEAGASPTYEXTVDQGNQEEV
FT                 REDNNEQATQEEVTVDQGNQEEVLEDIIQQAPDDQQSSHENNPSPSLLKTN
FT                 STILASVSGPSTSLSNSPVVKDSPNLTLTPTLYHSANDSDDSSDDEVQILA
FT                 STHGPSKVLVSSGXPTLKARGLSRTSKSGRSIIPPNRYTPEFD"
XX
SQ   Sequence 4531 BP; 1546 A; 860 C; 830 G; 1291 T; 4 other;
     tggcgcagtc gaatctgtaa atacgtgagt gctcattctt caatcttttt tttcttcggt        60
     aaagtaaata cgttcgtcgc ggtgtgctac tataacctca catcctttgt tcaatcacca       120
     tggctttatc cgttaacatt cctcaagcat tgcaagtcac cggtaatctg tccaataact       180
     ggaagacttt tcgccaaaac ttcgagatat tcattctagc aagtaaaagc agcaatgagg       240
     aagatgcagt taaggtggcc atgttcctga acgtaatcgg tcaagatggg gtggatttgt       300
     acaattcatt caacatgcct gcggataaga agaacgtact aaatgaagtc ttatcaactt       360
     ttgaagctta tgcctcgccg aagaagaatg tgactttcga acgttacgta ttcaacaata       420
     ctaaccaagc agaaggtgag tccactgatc agtatattac taagctgaaa aacttagcca       480
     aaacatgcga atttggtgat cttcaggaat ctctcattaa agatagactt gtgtgtggca       540
     tcagaaattc tgcgattaga gaggcccttt taagaatcca agacttggat ctaacgaagg       600
     cgattatgca ttgtaaatct gcggagctaa gcaaagtgca agcgtcacac atgtctaacg       660
     gaagaagcag caagacatcg gaagatgact tacttcctat tgatagtatt tctagaaaaa       720
     caagcaagca tcagtcaaag caaacgtata agtcagctta tcgtagcaaa aattttgaac       780
     ctaaaaagca ttcaaatgtc tctagcaaaa atcgcataag tgaatgtatt tactgcggtt       840
     atgaacatgc acccaaaaaa tgtccagctt ttggtactaa atgttctaaa tgcaaaaaac       900
     cgaatcacta tgcctctgta tgtaaaagtt caagtagtgt acatcatctt aatgaaattt       960
     ctgattctga cagcagtgac actgacacaa gtgaaatagc atttcttaat gaagttaaat      1020
     cactcccaat aaacagtgtt ggttgtggca aagcaagcag caatgaatgg csacaaaata      1080
     tcttcattca aaattcatgc attaatttca aattagatcc aggtgcaagt gttaacacaa      1140
     tctcaaataa tgtcttcaaa aaactgaatt atcctggtga actaaaaccg gcaacaaagt      1200
     acctacaggt atttggtgga aacattatta aacctawagg cgaaattgtt ttaaatactt      1260
     ctgtcaagga tatgcaatct aaactgaaat ttagtgttgt taaagcggac acaacaccta      1320
     ttttaggtct ccaagcgtgc gtaaatctca atttagttca tagagttgaa tcaatcgcaa      1380
     ctagcaaagc agattttgaa aaagaaaatt tcataaatca aaatttagcc tctttcaatg      1440
     gattaggtaa aattcctggc gaagtaaaaa tcacagttgt gaaaaatgcc agtttaccaa      1500
     atcatccgcc tcgacgaatt ccatcgtcat taaaaagaaa cttcaaaaaa gctcttgata      1560
     gattagtcaa aaagaagata attgtaaaag tcaacaaaat cacaaataac cattgtatca      1620
     atcaccttgt tgttgttgaa aaagaaaatg gaagtctccg tttttgtctc gacccacaag      1680
     agttgaataa acaaattgtg actaaacatc atctcatccc aactgtgtcg gaaatatctg      1740
     agcggttgca acataacaaa tattttactg tttttgacct taaagatggg tatcatcaac      1800
     tccaactgga tgaagaatcc tcgaatttgt gttgtttttc cactcctttt ggaattttta      1860
     agtatgttcg cttacctttt ggtttgactt gctctagtga aatctttcaa aacagcatgg      1920
     aagagaagtt tggaatcatc cctaatgttc tagcctttca agatgacatc ataatctacg      1980
     caaaaacgga ggaagagcat gatcgagctg tacgggctgt actccgaaga gcacgtgagt      2040
     taaacatcaa atttaatcta aataaactcc aatataaaaa accatcagtt aaatatgttg      2100
     gtttcattta tgatgaaaat ggtcggcaca tcgacaagga tagaatagaa gctttattgg      2160
     ctgttgaacc tcctaattca aagaaaaaac tccaaaagtg ccttggaatg ttcaattatg      2220
     tacgagattt cataccaaac atgtcaacaa tcacagctcc tttacgtgac ttactaaaag      2280
     ataacgtaca gttccaatgg ttacatactc atgaagaagc ttttaaaaaa ctaaaaacgt      2340
     tagttgtcaa ttctcctgtc cttgcaaatt ttgacccgaa tttacccgta gagattcaaa      2400
     gtgatgcgag tcaagatggt ttaggatgtg tgttgatgca aaaccaaaga cccgtagctt      2460
     tcgcatcagc tagtttaaca tctgctgaga aaaactattc tcaatctgaa aaagagttgc      2520
     gtgccattga ttttgcctgt aacaaatttc acaattatgt ttatggctat gatatccttg      2580
     ttaagacgga tcataaaccg ttagtccctc tcatgaataa ccctgtgaat aaaattggat      2640
     ctagtgttct acgtagactt cgtctaaaac tatttaagta taaattgact gtcgaatacc      2700
     ttccgggtaa acaaatgctc attgcagact tattatcaag gtcatttctt aaatgtgttt      2760
     caaaagacga tcctgaatcc tgtgaaatag tccattcaat agtaaagtac ttacctatgt      2820
     cggaacagag aagagaacaa tttgtgctag aaactaacaa agatcctgaa ttaaaagctt      2880
     taaaggattg ctacatgaag ggttggcctg aacatcgtaa actcctccca gaaattatca      2940
     aatgggcttg gccaactaga cataattttt atgttgattc caatttagta tttttcaatg      3000
     atcgtctctg tgtccctctg gctctgagaa aaactatttt agacctgctt cataaaggac      3060
     ataatggtcg cgataaaacg gtggccaaag cgcagcaagt ttatcactgg agaaacttat      3120
     accaagatat ttctaaaagt gtagcagaat gttttatctg tcaaaaacat caacctatga      3180
     aatcaaaagc aactatggta ttgcccgaaa tctctaattt tcgttttgag acggtcgctg      3240
     ttgacattct acaaacgatg ggtaatagtt acttaatact cattgacaca ttctctaaat      3300
     ggctagaaat ttgcccaatt aaaagaaaaa ctgcaaaagc agtcgtcgac aaattgctaa      3360
     ccgtatttgc ttgtcatggt attccgatga aaattcatgc tgataatgtt ccgttcaatg      3420
     ctgaagagtt cataaatttt acaaagaaat atgatattga actaattaaa tgtagtcctt      3480
     attatcatca ggggaatgga ttggctgaaa aggcctgtca tgtagccgaa aaaattctgt      3540
     taaaaagtaa ggatcaaaat gttgatttta gagaacttct gttagaatat cgaaacactc      3600
     ccctatctaa attgaaagct tcacctagcc aaattttgat gagccgaaat atgcgaactc      3660
     tattgccagt aacaacgaat ttccttacac cgaaggtcat tgaaaatgtt cgtgaacagt      3720
     tagtagaaaa ccagcgtaag tctgcgctcg tatacaacaa aactgcaaaa cggaaacctg      3780
     atgtgttcga agaaggggaa aaagtattag tcaaaactgc aaaaaatgaa tcatggttgc      3840
     cagcaacagt agttgaaaag cacaaaactc ctaggtcgta tatcatccgc aaacagaatg      3900
     gaaatctctg ccgaagaaat gaagttcatc tcaaaccgtt ctgtggtcgg aaggaagatg      3960
     ttattaatga agaacccttt tacgatttca ccttggaagc aggagccagt ccaacttatg      4020
     aakcgacagt tgatcaagga aatcaagagg aagtacgaga agacaacaat gaacaagcaa      4080
     ctcaggaaga agtgacagtt gatcaaggga atcaagaaga agtcctagaa gacatcattc      4140
     aacaagctcc ggatgaccag caatcatctc atgaaaataa tcctagtcct tcattgctta      4200
     aaactaattc aactatttta gcctctgttt caggtccttc tacttctttg tctaattcgc      4260
     ctgttgtcaa ggattccccg aacttaacgc tgacgcccac tctgtaccac tctgcaaatg      4320
     attcagatga cagcagcgat gatgaagtac aaattttagc ttcaacgcat ggtccttcta      4380
     aagttttggt ttcaagcgga sggcccactt taaaagctag aggtctgagt cgtacatcca      4440
     agtctggaag atccatcata cctccgaacc gatatactcc tgagttcgac tgaccctcgt      4500
     tttgttctcc tgtctttgtt aaagggggag a                                     4531
//
ID   Gypsy-30_TrVa-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-30_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 334-334 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 187 BP; 54 A; 27 C; 39 G; 67 T; 0 other;
     tgttggagtg gcatgcgtgt catgcctttt tccttggttg gcagcagtgc cgtgattgta        60
     ttatctttat atatattgag agctgtcagt gaacgtgtca aagttgttaa ctgttaatta       120
     gttatagaaa gtaaaataaa tattttctga tctcaacaat gggttagctt aatcaaaccc       180
     taaaaca                                                                 187
//
ID   Gypsy-31-I_NVi repbase;    DNA;    INV; 12808 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-31-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-12808
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 998-998 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3123..5720,5545..8928)
FT                 /product="Gypsy-31-I_NVi_2p"
FT                 /translation="PKFKLEARSPRSSSAERCKEAREKREENTMGGQHENS
FT                 AAIRFLTAGRQPPIVKIESPQLRARTGKFYADSGADISVIKVGELAPGYPY
FT                 DARKIIKVLGVTPGTSFTLGQAVIQLQGLQCDIHVVPNEFPISESGIIGWD
FT                 IINAHKGCVDAANKSLRLGEVILPFEADEQITIPPRVRMVISARVRNNNAK
FT                 IGWVPLTDLHPNLLFGNFVAENNNGRVYAECINISESEITIPSPVVELLDC
FT                 ETIADNTLYRADEDGSAENIANFTASLRRMFSCEKQQEKYKEVSALNNKLM
FT                 ADDKARRERVEKILQLADTEGCNAEEIELIRAVVNDYAGVFGLEGEPLPAT
FT                 HLLQHKIILKSDKVIRNARFRFPPALKEHMLRELAKLREQNIVVPSNSNYS
FT                 SSLWIVPKKPDAQGNKKFRLVTDFRALNEETEGSCHPLPFTSDILEHLAAA
FT                 NYITVMDLKQGYHQIEMHPESAHLTAFYAPDGNYGNQLLQFNRMAMGLKEA
FT                 TITFTRAMSLAMAGLQGEEVEIYLDDLMVFSETLDQHMVRLRRVLKRLLEA
FT                 NLTVEPRKCQFLKKEAHVLGHIVGGGSIKTDPAKTRAMAKYPVPTDPKKLK
FT                 QALGLFSYYRRFIKNFSGIARPLFKLLQKEAEYIWGPEQTVAFNTLREMMS
FT                 KEPVLKAPDLNQPFIVTTDASDWALGAILSQGKLGADQPCAYASRCLKGSE
FT                 LKYPTYDKELLAIVFAKDQFRYYLFGRKFTICTDHEALKHFHTTKKPDLRF
FT                 NRLKAALIGYDFDIIYRPGKKNANADALSRNPVISEGEDNPELPRVELYAL
FT                 ADKQIKENPDEDANAPPGRIFRTRAVKGAAGEKARQSSSSPDDFERSRENK
FT                 EKAGRERANFQQRKKIRTKMQTPHRAEFFAHAQSKGRQERKHDNRHRAPTI
FT                 SSEAGKIKKKRDVNALIFSKDDTLAVRNEFNEFYLCRALHDVHHGDELIQI
FT                 RWFTEAKNQPNVYALDYRDAIRFETVLTSTTLKRTTGNRYVLSKDEKARIF
FT                 KILHEAIELYPAPVISQVGAETALNAASDSDESMITVKTAVSDSIRDVILP
FT                 PGAWNYVRNVSPASATRGAKSSKSRKTPKVYSPNSSSSSESEGLIPPSGKI
FT                 TSQEPLQTFKFPIERVNPRNILLPHSASSVSSMSANKSPAPKVPSLSHETS
FT                 PKENHSRPNSKPMTPDVENRANDDPIPLPSPSWPWSEQIQKKRLAVDIKAK
FT                 EFGSKGGLQINVWERKSTDGSERGNAQQIIATESNRHAPAENAHVDVRNAQ
FT                 IRHPSPQAERIQQDAQKLDSRSGKVILDSRKPPPAANATEPEPKETSREQT
FT                 XHIAPMDTESEMHALADPENVGPAEDFSGIPRNYDRRPEPSDENSSISSGN
FT                 VLVQTYIRKKRCAEPYTKLRRSSNIPSFPPGNCLFFSLIKIAKLDISATEL
FT                 RQQLRVSSMLQHCGEPGETEKILASDTDYGTVDCAFLFAHEYGINICIHYD
FT                 LPGDTRIFCHIIVNSRDKYIHLNLTGQHFTPYLRVKVPKPAARAAARPRNR
FT                 SPSSDTDQSARKSPILGRIKKRTRKTAHTTIGLKAKGHIAQNSDAVSEAPA
FT                 PIAASSGSNVHPMQVATSDDHETSKSPSIIVNPAESSGPEGSGTPQFTKFQ
FT                 RSYNAHPPSANISPQIPPDTSNSTVASSAGENIAAAEVHSGSTAHQPTRTR
FT                 PRAEADALTDESGVSTDNERIAPTGDTTGAMIEAARKDEKLKRYLVAGARP
FT                 PREKPPWAIPEGQEPPPFVHLQSYNEHPFRFRENLVYLMSADNFISTEIQE
FT                 ALIERGYLDAEALVSKRFNVGEINITEFKEIQLIGVYVKRHIDDRPLKADL
FT                 QKCLKTLRSVVLSRKINSFAIIRDLAILTIDEWTKFIDLFDAIFMNKHVTA
FT                 ILYKNNLPVPPVSERIKILKEYHEAAMGAHRGISKTYNKVASDFYWRHMRP
FT                 DVKQFVARCAVCQSNKLVRIKTRLPMLISNTPSLPFAQIALDFYGPLEPTE
FT                 RGNRYILSVQDMLTKYVI*"
FT   CDS           join(8805..9614,9694..10854)
FT                 /product="Gypsy-31-I_NVi_3p"
FT                 /translation="QYTIVTFRANCVRLLRATGANGTWQQIHSFSPRYANK
FT                 VRNLIPTKHASANEVARALTEKVICIFGPPAAIVTDQGTHFQNKTLEYLAE
FT                 IFGIHKFCTTAYHPQANGSIERMHHTLTEYLRKYVRKTDCWDDWTAICQHA
FT                 YNCTEHESTRYTPHELLFGIKPRTPSSFPRKNDDISYNQYIEEMTTNLTAL
FT                 QSTVAMNLVQSKYRSKYYYDRKLNTKHFREGETVFLLKEPKESKFAVEYQG
FT                 PFEIIKISRKTNNVTLQNDETTKIVHVNKCLYLNIYFANIRVPRSLARRKN
FT                 KLSLLTRACPYRLAVGAQPVGTFELNEESTNGFIHRFQENLGLIIEKIAPL
FT                 ATSSTDWKIIQKTDLRAYFKAGEILMKHATQIIHACGPKCEESNILEEIKA
FT                 AKRQAERVIDLILVHGGGEDLHRQRRSLLPFIGTVHKFLFGTLNENDEREI
FT                 KAAIQAIDGDTRLTAALLAKQTEIVNRTLFDLDQKTARLQAHVVELANRTA
FT                 ANNNDIATNSAMSSLKTTLLQFKLDTEVLTDAILFAAKGLVHPRILPPNTI
FT                 NRAAKTVESAISNARFPLPEGSFSALPIMKISKLSILYAEGYLIYQIAIPL
FT                 LDTQKFIQSITPTGDATNSKQLGGSSIYLARTSVLRNERIKPYLYAATSGK
FT                 NRKTQEN*"
FT   CDS           join(95..619,672..1841,1576..2292,2358..2981)
FT                 /product="Gypsy-31-I_NVi_1p"
FT                 /translation="FLKKLEESSTWHQDSHRRIQQRKVKENREFSRQNPRG
FT                 RRGSRQPSELKKITQSIEKAVGRLNKEGLDCKASLKKSTKSIWAHKVDLRP
FT                 SKSIWTNEAHLGQRTSSNTRRRGQTTDEPSSSAAVATTRQPEPAPASTRST
FT                 VVGADQPPTRASNQPAPAASPATSMDRVIAVALSFLNTHTYFRERQNSYSV
FT                 KSAHHKSKQKKNYIMAPPKIISAARSALRLGARSKDRTSGAESDPQDTRKQ
FT                 LSRANRIFKIHQKMPPNYQRGVTRTLSSAVLESSDSENEIHRTRMTRNWST
FT                 AQKQLLENSSTVPRRTEQSNQTDEESRELIDIRANSPALSYAGLPQGPQST
FT                 QIDMKNLESRLEELRLDQSVQVDNPWGPIGQPLETPERLAINARCQQNIAN
FT                 LCGMKNIVWGNNDLITDGPKPQDYGLPTATDSTQFVGLPPVLPIDNLGQKE
FT                 TDGGMVRAEPAIVNAAGTSELRLSREQLQRIIKESIRQYSEEEGSVLGGKA
FT                 SRRYRVREGNTKQRGRTYAEKNTETRRKDTRQARKVARTKNDKAAIGEARD
FT                 RERYGCTRQSEKNQRRRALKSRSGSIVKKRAQYSVVRQADDIGSAKATPNN
FT                 AEERTRKKTPRRDEKTPDRRERSRERRTIRRQSERRETGKDTVARDSQRKI
FT                 RDDARSQNISREIRRNKYEPHSIRRSPYREAAANSDRTRKMHSSPSRGFMR
FT                 YNGHATPRRAHNAYYADTESDSEDDFETETNDELETRRDGARTYDDYSSET
FT                 HDSEYESSPGTRPDRAIYELVTSATDITFDEKCEYRHCGANSLPDTHGKAR
FT                 RRTQPQSYRTPKGRRGGDRRTRTCLVRSKGPKSLGAAITVAIGYEGKQSAR
FT                 SAIPSETSAARASAQVRLVTAEEASPAADRDARPEKSNAQSDRQTEKTYCT
FT                 YCKMXGHPLDECRTIIRHAAEKIIQNPIANRGRNFRYDDNNGNGNNNGTNP
FT                 ENRNASNGSASKLNGDQNYNNGGDSNNGGYRGRNPNFNRNSRFNNYQNNGS
FT                 QLRPK*"
XX
SQ   Sequence 12808 BP; 4252 A; 3170 C; 2934 G; 2446 T; 6 other;
     tctggcatcc ctacgtgggg ctcagcagca gccaagacag cagctgagtt tacggcaact        60
     ttccaccgca gccgtctgaa aattactcag ataatttcta aagaaattgg aggaaagcag       120
     cacgtggcac caagatagcc accgcagaat acaacagcga aaagtcaagg agaacagaga       180
     attcagccga caaaatccac gaggtcgccg aggctctcga caaccgtcgg agctaaaaaa       240
     aataacgcaa agcatcgaaa aagcagtcgg ccgattaaac aaggaaggcc tcgactgcaa       300
     agcaagtctc aagaaatcca caaagtccat ctgggcccac aaagtcgatc ttcggccctc       360
     aaagtccatc tggaccaacg aagcccatct gggccaacgc acaagcagca acacccgtcg       420
     gcgcggacaa accaccgacg agccaagcag ctcagcagcc gtcgctacaa ccagacaacc       480
     ggagccagca ccagcctcca cgcgcagtac agttgtcggc gcggaccagc cgccgacacg       540
     cgcgagtaac cagccagccc cagcagcgtc accagcaacc agcatggaca gggtcatcgc       600
     agtcgcgctc agctttctgt aagtccctct tattaaatat ccacgcagct tggcttccgg       660
     gaacgaattg aaatacccat acatattttc gcgagcgcca aaatagctac agtgtaaagt       720
     ccgcgcacca taaatcaaag caaaaaaaaa attatattat ggcacccccg aaaataatta       780
     gcgcggcaag gagcgcgctc cgacttggcg cacgcagcaa ggacagaaca tcaggtgcag       840
     agagcgatcc gcaagatacg cgaaaacaat taagccgggc aaatcggata tttaaaatac       900
     accagaaaat gccgccgaat tatcaaagag gagtaacgcg tacgttaagc tccgctgtat       960
     tagagtcaag cgattcagaa aacgagatac accgcacaag aatgacgcga aattggagca      1020
     cggctcaaaa acagctactc gaaaatagca gcacggttcc gcgaagaacc gaacaatcca      1080
     atcagacgga tgaagaaagc cgcgaattaa tcgacataag ggcaaacagc ccggcattat      1140
     catatgcggg attaccgcag ggccctcaat ctactcagat cgacatgaaa aatcttgaga      1200
     gtagattgga ggaattgcgc ttagatcagt ccgtgcaagt agataacccg tggggaccaa      1260
     tcggacagcc actagaaacc cccgaacgcc tggcgataaa tgctagatgt cagcaaaata      1320
     tcgcgaattt gtgcggcatg aaaaacatag tgtggggcaa taacgatcta atcactgacg      1380
     gtcccaagcc tcaggactac ggtttaccca cggccaccga tagtacgcaa ttcgtgggtc      1440
     tcccacccgt gttaccgata gacaacttag ggcaaaagga aacagacggg ggaatggtac      1500
     gcgcggaacc agctattgta aacgcggcgg gcacgtcgga gcttcgcttg tccagggaac      1560
     aactccaaag aataattaaa gagtcgatcc ggcagtatag tgaagaagag ggctcagtac      1620
     tcggtggtaa ggcaagccga cgatatcggg tccgcgaagg caacaccaaa caacgcggaa      1680
     gaacgtacgc ggaaaaaaac accgagacgc gacgaaaaga cacccgacag gcgagaaagg      1740
     tcgcgcgaac gaagaacgat aaggcggcaa tcggagaggc gcgagacagg gaaagatacg      1800
     gttgcacgcg acagtcagag aaaaatcaga gacgacgcgc gtagtcagaa tatctcgcga      1860
     gaaattcgca gaaacaagta cgagccccat agcatccgac gctcaccgta ccgcgaagcg      1920
     gccgcaaatt cggacagaac ccggaaaatg cacagctcgc ccagccgggg atttatgcga      1980
     tataacggcc acgcaacacc gagacgcgca cataatgcgt attacgcgga tacggaatcg      2040
     gacagcgaag acgattttga gacagaaaca aacgacgagc tggagacaag acgagacgga      2100
     gcgcgcacat acgatgacta ctcgagcgaa acacacgaca gcgaatatga gagcagccca      2160
     ggcacccgac cggatcgcgc gatatacgaa ttagtcacaa gcgcaacaga cataacattc      2220
     gacgaaaagt gcgaatatag gcattgcgga gcaaattcac tcccagatac gcacggcaag      2280
     gcaagacgaa ggtgaaacgg caggcgacta cggtctgcgc gtcagcaaat tatataaccg      2340
     gttgaaaact attctaaact cagccccaga gttatcgaac gccgaaaggg aggcgcggcg      2400
     gcgacaggcg gacgaggacg tgcttggttc gaagtaaagg gccaaaatcc ctgggtgccg      2460
     ctatcacggt agcgatcggg tatgaaggga agcaaagcgc gagatcagcc atacccagcg      2520
     aaaccagcgc tgcaagggca tcagcacagg tacgtctagt gaccgctgaa gaagctagcc      2580
     ccgccgcgga tagagacgca agaccggaaa aatccaacgc gcagtcggac cgccaaaccg      2640
     aaaaaacata ttgcacgtac tgcaagatgm caggccaccc acttgatgaa tgccgcacaa      2700
     taataagaca cgccgcggaa aaaataattc aaaatccgat tgcaaataga ggcagaaatt      2760
     tccgctatga tgataataat ggaaacggca acaataatgg cacaaatcca gaaaatcgca      2820
     acgcgagcaa cggctccgcg agtaaactaa acggcgacca gaattataac aacgggggcg      2880
     atagcaacaa cggcggatac cgcggcagaa atccgaactt taaccgtaat tcccgattta      2940
     acaactacca aaataacggc tcgcaattac ggccaaaata accgaaataa ttacggcaac      3000
     aatcgctata gcaatcacta taatcaccgt aactataatc gcaatgataa ctacaatgat      3060
     aatcacaata ataaccgtga taatagccgc gacaacgttc aaacaaataa cgaaactaat      3120
     aaccaaaatt taaactagaa gcacgctcgc cgcgttcctc aagcgccgag cgttgcaaag      3180
     aagcacggga aaagagagaa gaaaayacta tgggcggaca gcacgaaaac tcagccgcga      3240
     ttagattttt gacagctggt agacaaccgc cgattgtaaa aatagagagc ccccagttga      3300
     gggctagaac gggcaaattt tacgcrgact cgggagcaga catttcagtt ataaaagtag      3360
     gggaactagc ccctggatat ccgtacgacg cgcgtaagat aataaaagta ctcggagtta      3420
     cccccggtac atcgtttaca ctagggcaag cggtcataca gctacaaggg ctgcaatgtg      3480
     acattcacgt agtgccgaat gaattcccga taagcgaatc aggaatcatc ggctgggata      3540
     taataaacgc acataagggt tgcgtagatg ccgctaataa gagcctaagg cttggcgaag      3600
     taattctgcc gttcgaggca gacgaacaaa ttacaattcc ccctagagtc aggatggtta      3660
     taagcgcgcg cgtacgaaat aataatgcaa aaatcgggtg ggttccacta acggacctac      3720
     accctaacct actattcggc aatttcgtag ctgaaaataa taatggccga gtctacgcgg      3780
     aatgcataaa cataagcgag tccgaaataa caatacctag ccccgttgta gaattacttg      3840
     attgcgaaac aatcgcggat aatacgttgt accgagccga tgaggacggc tcagctgaaa      3900
     atatcgcgaa ttttacagcg agtttgcggc gcatgttcag ctgcgaaaag cagcaagaaa      3960
     aatataaaga agtaagtgca ttaaataata aactaatggc agacgacaaa gccagacgcg      4020
     agagagtcga aaaaatattg cagttagcag acacggaagg ctgtaacgcg gaagaaatcg      4080
     aattaattcg ggcggttgtc aatgattacg ccggagtttt cggcctcgaa ggtgagccac      4140
     tcccggcaac gcacttactg caacataaaa tcatattgaa atctgataaa gtcataagaa      4200
     acgcgcgatt cagattccca ccggctttaa aggagcacat gctccgagag ctagccaagc      4260
     tccgcgagca gaacattgta gtaccgtcaa actcgaatta ttcatcatca ctttggatag      4320
     tcccaaaaaa acccgatgcg caaggcaaca aaaagtttcg cctggtgaca gattttcgtg      4380
     ccctcaacga ggaaacggaa ggaagttgcc acccgttacc gtttactagc gacatacttg      4440
     aacatctcgc ggccgcgaat tacattacgg tgatggacct taaacaaggg taccatcaaa      4500
     tcgagatgca cccagaatcc gcgcatctca cagcatttta cgcgccggac ggtaattacg      4560
     gaaatcaact tttgcaattt aatcgtatgg cgatgggcct taaagaagct acaattactt      4620
     ttacgcgagc catgtcccta gctatggccg gtctgcaggg ggaggaagtc gaaatctacc      4680
     tcgacgacct catggtattt agcgaaacgt tagaccaaca tatggtccgc ttgcgacgcg      4740
     tgttaaaaag actgctcgaa gcgaatttaa cagttgaacc gaggaaatgc cagttcctga      4800
     aaaaggaggc gcacgttctc ggacatatcg tcggaggcgg tagcattaaa actgacccgg      4860
     ccaaaactag ggcaatggca aaatacccag tgccaaccga cccgaaaaaa ctaaaacaag      4920
     cactcggcct attcagttat tatcggcgat tcataaaaaa tttctcgggg atagcgcgac      4980
     cgctatttaa actcctgcaa aaagaggcag agtatatatg gggcccggag caaacagtag      5040
     cgtttaatac gttgagagaa atgatgtcaa aagaacccgt gctaaaagcc ccggatttaa      5100
     accaaccatt catcgtgaca accgatgcga gtgactgggc gctgggcgcg attttaagtc      5160
     aagggaagct gggagcggat cagccctgtg cgtacgcttc gcgctgcctg aaaggcagcg      5220
     aattaaaata tccgacgtac gacaaggaac tcctcgcgat agtatttgcc aaagatcaat      5280
     tccgctacta cttattcgga cgtaaattca caatatgtac agaccacgag gcgcttaagc      5340
     attttcatac aaccaagaaa ccggacctaa gatttaaccg attaaaagcg gcgctgatcg      5400
     ggtacgattt cgatattata tatcgcccgg gcaagaaaaa cgcgaacgcc gacgcgctat      5460
     cacgaaatcc ggtgataagc gaaggtgagg ataatccaga gctgccgcga gtcgaactat      5520
     acgcgctagc agacaagcaa ataaaagaaa atccggacga agatgcaaac gccccaccgg      5580
     gcagaatttt tcgcacacgc gcagtcaaag gggcggcagg agagaaagca cgacaatcgt      5640
     catcgagccc cgacgatttc gagcgaagcc gggaaaataa agaaaaagcg ggacgtgaac      5700
     gcgctaattt tcagcaaaga tgatacgctc gcagtgagaa acgaattcaa cgagttttac      5760
     ttgtgccgcg cgctgcacga cgtacaccac ggtgacgagc taattcaaat acgttggttc      5820
     acagaagcga aaaatcaacc gaacgtgtac gcgctagact accgcgacgc gataagattc      5880
     gagacggtgt taactagtac aacgctaaaa agaacaacgg gaaacagata cgtactaagc      5940
     aaagacgaga aggcgcgtat atttaaaata ctacacgagg caattgaact ctacccagcg      6000
     ccagtgatct cgcaagtggg agccgaaacg gccctcaacg cggcgtcaga ttccgacgag      6060
     tcaatgataa cggtaaaaac tgcagtatca gacagcatcc gcgacgtaat tttgccgccc      6120
     ggggcgtgga attacgttag aaatgtaagc ccagcaagcg ctacgcgtgg cgcaaaaagc      6180
     agtaaaagcc gaaaaacccc gaaagtgtac agcccgaaca gctcgtccag cagcgaatca      6240
     gaaggcctaa tacctccgtc gggaaaaata acgagccagg agcccttgca aacgttcaaa      6300
     ttcccgatag aaagagttaa cccgcgcaac atactcttgc cacatagcgc tagctccgta      6360
     agtagcatga gcgcaaacaa atccccagct cccaaggtac cctcgctgtc gcacgaaacg      6420
     agcccaaaag aaaatcattc acggccaaac agcaagccca tgacaccaga cgtggaaaat      6480
     cgagcgaacg atgacccaat accgctgccc agtccatcgt ggccgtggtc cgagcaaatc      6540
     caaaagaaga ggctggcagt cgacataaaa gcaaaagaat tcggtagtaa aggggggcta      6600
     caaattaatg tatgggaaag aaaatcgact gacggatcgg aaagaggaaa cgcgcagcaa      6660
     ataatcgcca cagaatcgaa tcggcacgcg ccggccgaaa acgcgcacgt agacgtaaga      6720
     aacgcgcaaa ttcgccaccc gagcccgcag gcagaaagaa ttcagcaaga cgcacagaaa      6780
     ttagactcga gaagcggaaa agtaatacta gactcacgga aaccaccgcc agccgcgaac      6840
     gcgacagagc ccgagccgaa agaaacctcg cgcgagcaaa ctyagcacat cgcgccaatg      6900
     gacaccgagt cagaaatgca cgcgctcgcg gatcccgaaa acgtcggccc agccgaggat      6960
     tttagcggca tcccaaggaa ttatgatcga aggccagagc catccgatga gaactcgtca      7020
     atcagctcgg gcaatgtatt agtgcaaacg tatataagga aaaaacgctg tgccgaaccg      7080
     tatacaaagc taagacgttc aagcaatatt cctagtttcc cgccagggaa ctgcctcttt      7140
     ttctcactaa tcaaaatagc aaaacttgac atttcggcca ccgagctgcg acagcaattg      7200
     cgagtttcgt caatgctgca gcactgcggc gagccaggcg aaacagagaa aatcctagct      7260
     tcagatacgg actacggcac ggttgattgc gcgtttctat tcgcgcacga atacgggata      7320
     aacatctgca tacactatga tttgccaggc gacacccgaa ttttctgcca cataatagtg      7380
     aatagccgcg ataaatatat tcatttaaat ctaaccggcc agcatttcac gccgtacttg      7440
     cgcgtaaaag tacccaaacc cgcggcaagg gcagcagcta gaccgcgaaa ccgctcccca      7500
     tcaagcgaca ccgatcaaag cgcgcgcaaa tcaccgatcc tcggcaggat aaagaaaaga      7560
     acgcggaaaa ctgcgcacac gacgattgga cttaaagcga agggtcatat cgcgcagaat      7620
     tcagacgccg taagcgaagc gccagcgcca atcgcagcca gcagcggttc aaacgtccac      7680
     ccaatgcaag tagcgacgag cgacgatcac gaaacctcga aaagcccttc aataatcgtg      7740
     aatccggcgg agtcctcggg ccctgaagga agcggaaccc cgcaatttac gaaattccaa      7800
     cgctcataca acgcccaccc tccaagcgcg aatataagtc cacaaatacc acccgatacg      7860
     agtaacagca ccgtagcatc ctctgcggga gaaaatatag ccgcagccga agttcatagc      7920
     gggtcaacag cacatcagcc aacgcgaact cgaccgcgag ccgaggccga tgctctgaca      7980
     gacgagagcg gcgtcagcac tgataacgag cgcatcgctc ccacaggcga caccacgggt      8040
     gcaatgatcg aggcagcgcg aaaagacgaa aaattaaagc gatacctggt agcgggagcc      8100
     aggccgccgc gcgaaaaacc accctgggcc atcccagaag gccaggagcc ccctcccttc      8160
     gtacacctcc aatcatacaa cgaacaccct tttcgcttca gagaaaatct cgtatattta      8220
     atgtcagcgg ataactttat atcaactgaa attcaggaag ccttgatcga acgcggctac      8280
     cttgacgccg aggccctggt tagcaagcgc tttaatgtag gagaaataaa cattacggaa      8340
     tttaaagaga tccagctgat aggggtttac gttaaaaggc acatcgatga ccgcccattg      8400
     aaagcagact tacagaaatg tttaaaaaca ttgagaagcg tggtactctc gcgcaaaatt      8460
     aacagcttcg caataattcg agatctagcc atattgacga tagacgagtg gaccaaattc      8520
     atcgatctgt tcgacgccat attcatgaac aagcatgtaa cagcaatcct atataaaaat      8580
     aacttaccgg tacccccggt aagcgaacgc attaaaattc tcaaagagta ccacgaagca      8640
     gcaatgggag ctcatcgtgg catatccaaa acttataaca aggtagccag cgatttttat      8700
     tggagacaca tgcgcccaga cgtgaaacaa tttgtcgcgc ggtgcgcagt gtgccagagc      8760
     aacaagctag tacggataaa aacgcgacta cctatgttga ttagcaatac accatcgtta      8820
     cctttcgcgc aaattgcgtt agacttttac gggccactgg agccaacgga acgtggcaac      8880
     agatacattc tttcagtcca agatatgcta acaaagtacg taatttaatc ccgacaaaac      8940
     acgcgagcgc gaacgaagta gcacgtgcgc taaccgagaa agtaatctgc atttttggtc      9000
     cacccgcagc tatagttaca gatcagggaa cacatttcca gaataaaacc ttagaatacc      9060
     tcgcggaaat tttcggcata cataaatttt gcacaacagc ttaccaccct caagcgaacg      9120
     gatccatcga acgcatgcac catacgctga ccgagtattt gcgaaaatac gtgagaaaaa      9180
     ccgattgctg ggatgactgg accgcgatat gccagcacgc gtataattgt acggaacacg      9240
     aaagcacacg ttacacgccg cacgagctgc tgttcggaat aaaaccacga actccgtcga      9300
     gctttccgcg aaaaaacgac gatatctcgt ataatcaata tatcgaggag atgactacga      9360
     atttaacagc gctacaatcg accgtggcga tgaacctcgt acaatcgaaa tatcggtcga      9420
     aatattatta tgatagaaaa cttaacacca agcattttcg cgagggggaa acggtattcc      9480
     tactgaaaga accaaaagag agcaaatttg cagtagaata ccaggggccg ttcgaaatta      9540
     ttaaaatcag caggaaaacg aataatgtaa cattgcaaaa cgacgagaca acgaaaattg      9600
     ttcacgtcaa caaataaaaa gaatagcgaa ctagctagac tcgggaggat agtcgttttt      9660
     ttttcactgt ttttacgtgc cgcgcaaaaa tagtgtctat acctcaacat atacttcgca      9720
     aatattcggg tcccgagaag ccttgcgcgc cgcaagaata aattatcctt gttaacgcga      9780
     gcatgccctt acagattagc agtgggagca caacccgtgg gcaccttcga gttgaatgag      9840
     gaaagcacca acggatttat ccaccgattt caagaaaact taggcttaat tatagaaaaa      9900
     atagcaccgc ttgcgacgtc cagcaccgac tggaaaataa tccagaaaac ggacttgcgc      9960
     gcatacttca aggcaggaga gatactaatg aagcacgcga cacaaattat acacgcgtgc     10020
     ggcccgaaat gtgaagaaag taatatcctc gaagaaataa aagcggctaa gcgtcaggcc     10080
     gaaagggtga ttgatttaat tttagtgcat ggcggcggag aagacctaca caggcagcgc     10140
     cgctcgcttt tgccatttat aggcaccgtg cataaatttt tattcgggac tttaaacgag     10200
     aacgacgagc gcgaaatcaa agccgcaatt caagccatag acggcgacac acgcctcaca     10260
     gcagctctcc tagcaaagca gaccgaaata gtcaaccgca cgctattcga cttggatcaa     10320
     aaaaccgcgc gtttgcaagc ccacgttgta gaattagcca atcgaactgc ggcaaataat     10380
     aacgacatag caacgaacag cgcgatgagc agcctaaaaa ccaccctact acaatttaag     10440
     ctagacaccg aggtcctcac tgacgcgatc ctgttcgcgg ccaagggatt agtccatccg     10500
     cgaatcctac ctcctaatac aatcaatcgc gcagcgaaaa cagtcgaaag cgcaatctca     10560
     aacgcaagat tcccactacc agagggcagc ttttcggcgc tcccaattat gaaaatttca     10620
     aaattatcaa tattgtatgc cgagggttac ctaatttacc aaattgcgat ccctcttctc     10680
     gatacacaaa aatttataca aagcatcacc cctaccggcg atgcaacgaa ttctaaacag     10740
     ctcggaggta gcagcatata tttggccaga acatcagtac ttcgcaatga gcgaatcaaa     10800
     ccgtacctat atgccgctac ctcaggaaaa aatagaaaaa ctcaggaaaa ttagtaactt     10860
     gctcatagcc gaaacctgta agggaggtgc acgctaacgc ggcgtgcgag attataatag     10920
     ctgccgggcg cgcattgaac aaccctgggc actgcgacgt cagaattcgt cagctcaagg     10980
     acacattctg gctacggctg cacaaagcta atacatgggt attctccacg tattcagccg     11040
     aaatatatac atccaatgtc ttaagagccg agcagattac ggcaaccata aacggtgcag     11100
     ggctgttatg cacggcctga attctcggcg cacatggcaa acgcgtaatt aacagcgtcg     11160
     cgatccctcg aagcgcgcat gaaagattca tctttcaata ccgtgcactt agatctttca     11220
     gcaatcgttg ccgaattaaa ccaatcaaaa aatactttat ccgaattcga atcagcaatt     11280
     aaaacggaag cggaaattcg ggccgtgaat ctacacggta taaaattaga agcactagaa     11340
     tcggggatag gccttcgcga cattgccgca aaagcccgcg agcaagcgca aagcaaggca     11400
     acagcgcgca aggtgcaagc ccttgacgag aacacaacca ttttcggata ctccgcgtcg     11460
     gcaatcttaa taggagtaat tgcgctaggc ggcgcctgct ggtacgtaaa gagcagacgc     11520
     gccagtaacc ccatagaaaa attcatccgg cagcaagaaa cgagaatgat ggtggaccaa     11580
     gtgcgccagc tatcgcgcag tcgtaacgcg atcaacattc aataaaaaga aaaaataaaa     11640
     atcaatctcg ctatcgattc gctacaacag attgaagccc tcgcacgctc aaaaatatca     11700
     gagtcaaaag ccaagctgca tggaaagagg gacaaaatgc gagctctcta ggagcaagct     11760
     tactagtaga ataaccccta gtagaaaatt aacagttgaa attcattaaa aagttaagtt     11820
     taattggcca gttttatcaa atttgaatgt aaaaaaatta attaaaatat tgctaatatt     11880
     ttagtgatgc gtatctataa taccacatca gtattattat taagttaaac attgtttttc     11940
     cctttttttg gcattaaaac gtatatatgt cttattacga atatttggat tttttacgat     12000
     tgtaacgtat ttttctacaa tttttggatg aacagtcatt tgacaaattt caagcaaaag     12060
     tttcatttta tcatgattaa tgcgtcatat ctatgcattt ataacggtta aacgcttatt     12120
     taggtaaatc gttaaccaca caagtgtgtt aaaacttagc ttattaaccg ttaacatttc     12180
     taccagggac ctttattata tatttgtaca cataatatta atcaaatggg aatatttaga     12240
     tataagttgc gcttaggcca taccagccaa gccgcaggta gcgcaagtag cgcccataat     12300
     cattartaac gccaagcgcg atataattaa tttttctttt cagctatact tattacaaca     12360
     caatgattat aatataaaat attgttatac caattttcgt caatgaaatt aataattatg     12420
     tatatctaat tttaagaaat atttgtatgt aggagctctg ccccgccccc aaaaaattgt     12480
     acagcagcag cggctgctaa tcacaacatc cgcgacataa aatacacaca caccgaaatt     12540
     cacacttgca ctaaaaaaca tatataatag cacaataata aatcggaaat tggagaagaa     12600
     tccaatgcgc aaacctctct cgtgtggggt cacccccact ggcatccggg acaaaagaaa     12660
     tttaaaagag aaaaaaaatt tttttaaatt kaatcacaca cactcactct cacaaacaca     12720
     aactcacaca agcgctccca ggtgcggcaa tcggtaactg tttttttttt ctgggcgacg     12780
     aggacgtcag cccgcgcgac ctcggact                                        12808
//
ID   Gypsy-31-LTR_NVi repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-311
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 999-999 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 311 BP; 61 A; 108 C; 83 G; 59 T; 0 other;
     tgtcacggac gagcaccagg ctctccgtcg gcacatccgg tggtaccacc gacgatgcag        60
     gtgcatcgtc agcgaggtaa gccgccacct gagagctcgc gcgtgcagaa atgcaaggta       120
     tgcatctcca cccgcgcgac cgctcgccgt cgacgagtcg cgtcgacgac agagcgggca       180
     gatcaccggc gaccaccaaa ctggacggag ctcccttttt gggactaata cacgagcttg       240
     ttctccacct ctgccttctt cttttctgcg cctccaagtg ctctctggga gcacccaccc       300
     attccgtgac a                                                            311
//
ID   Gypsy-310_AA-I repbase;    DNA;    INV; 4242 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-310_;
KW   Gypsy-310_AA-I; Gypsy-310_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4242
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4242
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 437-437 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4206
FT                 /product="Gypsy-310_AA-I_1p"
FT                 /translation="MAPPDPRAASTAANAAAVAGNAMPASFTFEPFNAATA
FT                 KFDRWLERLEISFRIYKVAPEDKRDYLLHYMGGSTYDVLCNKLKNESPDTK
FT                 TYDDIVTLLKSHYSPAPLEILENYKFICRKQLDHEALCDYITDLEKLAQTC
FT                 NFGAHLDTAIRNQFVFGLRNRTIQSRLLEVRDLTLVKAKEIAFGMEMSHRG
FT                 TDEMHGSTKTEIQYLEHGRLKKKKSGAKPFTPKTKPKPAAASQERACYRCG
FT                 DADHFANKCRHQSTVCNFCKRKGHLEKVCQSKLRSNKEKSSEKAVTHHIED
FT                 STVIKDVFHLRSTPGFADKFMLDLKVDGRTLTFEVDTGSPVSLISSHDQRR
FT                 YFKDFPIHTTATKLVSYCDTDINVPGKIFVKVMSNGDELTLPLHVAXSNRH
FT                 PIMGRDWLLRLNIDFNSVFKPGVHSVSHTDLSCKPTPSTLKCLLDKYSRVF
FT                 NGNTGKIVGVQASLNLRAGTQPVYIKHRPVAFAVRNAVETEIDKFVKDGVW
FT                 EKVDHSDWATPVVPVRKAAGKVRLCGDYKVTINPHLLVDEHPLPTVEELFA
FT                 TVAGGDKFSKIDLSQAYLQLEVRNEDRKLLTLSTHKGLYRPTRLMYGVASA
FT                 PAVFQRLMEQILQGIPGVTVFIDDIRITGPDDESHLRRLEEVLRRLEAHGM
FT                 RANRDKCEFFASNIEYCGYSVDKCGIHKLQSKVDAIQSMPVPTDKEQVRSF
FT                 VGLVSYYGRFFPNLSTILYPLNNLLKDDVPFAWSKECDKSFNFVKKEMQSD
FT                 RFLVHFDTTLPLVLATDASPYGVGAVLSHRFPDGTERPLQYASQTLTRTQQ
FT                 KYSQIDKEAYAIVFGIRKFYQYLFGRRFTLVTDNKPVSQIFSESKGLPTMT
FT                 AMRMQHYAAFLQNFDYCIRYRRSSDHCNADAMSRLPVATTDPENEIEEPDA
FT                 IEINSIQTLPLTVEDLGSATLADSSVRELIRGLRSGRTVDARFRFGINQEE
FT                 FNLQRDCIMRGIRVYVPPSLRQKVLNELHSTHFGVSRIKSLARGYCWWEGI
FT                 DRDVENLVNNCASCQATRSNPPKISYHCWESPSEPFQRVHADYAGPFMGYY
FT                 YLIIIDAYSKWPEVHIVKNMTTETTIRACRQFFSTYGLPSVFVSDNGPQFT
FT                 SCEFAKFLKMNGVVHKLSAPYHPATNGQAERFIQTMKLKLKAIDCDRSQIH
FT                 GELCSILMSYRKMIHPATGLSPSXMVYGRQIRSRIDLMIPSSNSNVREALG
FT                 RFRELELGTRVSAREYVHDNKWEFGIVQKRLGKLHYLILLDDGRVWKRHIN
FT                 QLRSIGQGIASSSTSEFSARGDRSEHVQDHTVAITPIEPTVSGTGSAQHDS
FT                 DNIHDENVPLSSPNVTAKPATPFRSSTAPVSIAADHAETQRPAGSGGLLVD
FT                 QGLRRSGRTIRPPTRLDL"
XX
SQ   Sequence 4242 BP; 1105 A; 976 C; 1027 G; 1130 T; 4 other;
     ttttggcgac gagaaggagg aaaggaccat tttcggcgtg caagkaattt tcgttttgcc        60
     aacatggcgc ctcccgatcc gcgagctgca tcgactgctg ctaatgctgc tgctgttgct       120
     ggcaatgcaa tgccggcatc gttcactttc gagcccttca acgcggcaac cgccaagttt       180
     gatcgctggt tggagcgctt ggaaatttcg ttccggatct acaaggttgc tccggaggac       240
     aagcgggact acctcttgca ctacatgggt ggttcaacgt acgatgtttt gtgcaacaaa       300
     ttgaagaacg agtcgccgga caccaaaacg tacgacgaca tcgttaccct gctgaagtcg       360
     cattacagtc cggctccact ggagattttg gagaattaca aattcatctg ccggaagcag       420
     ctggaccacg aagcgctgtg tgactacatt acggatctgg aaaaacttgc acagacctgt       480
     aattttggtg cacacctgga tactgccatc cgaaaccaat ttgtgtttgg tttgcggaat       540
     cgtaccatcc aatcccgctt actggaggta cgcgacttga cactagtcaa ggcgaaggaa       600
     attgcgttcg gcatggaaat gtcccataga ggaacggatg aaatgcacgg ctcaacgaaa       660
     acggagatcc agtatctgga acacggaagg ctgaagaaga agaaatccgg tgcgaagccw       720
     tttacaccga agacgaaacc aaagccggcg gctgcgagcc aggagcgggc ttgctatcga       780
     tgtggtgacg cagaccattt tgccaacaag tgcaggcatc aatcaacagt gtgcaatttc       840
     tgcaaacgga aggggcacct ggagaaagtt tgccaatcca agctgcgtag caacaaggag       900
     aagtcgtcgg agaaggctgt tacgcaccat attgaagact cgaccgtgat taaggatgtt       960
     ttccacttgc gaagcacgcc ggggtttgct gataaattca tgctggatct caaggttgat      1020
     gggaggacgc tgaccttcga ggtggatacc ggttcaccag tttccctcat cagttcccac      1080
     gaccaacgac ggtactttaa ggacttccct atccacacga ctgcgacaaa actggtgagt      1140
     tattgcgata ctgatattaa cgttcccggt aaaattttcg ttaaagtaat gtcgaacggt      1200
     gatgagctca cattaccctt acatgtggcg gaktctaaca gacatccaat aatgggtcgt      1260
     gattggttgc ttcgattgaa tatcgatttc aatagcgttt tcaaacccgg tgtacattct      1320
     gtttcccata ctgatctttc ttgcaaaccg actcccagta ctttgaaatg cttgttggac      1380
     aaatactctc gtgttttcaa cggaaatact ggtaaaattg ttggggttca ggcttcactc      1440
     aacctgcgtg ctggtacaca gccagtgtac attaagcata gaccagttgc ttttgctgtg      1500
     cgcaatgcag ttgaaaccga aattgataag ttcgttaagg atggtgtttg ggagaaagtt      1560
     gatcattctg attgggctac gccagttgtc ccagttcgga aagctgctgg caaggtgagg      1620
     ttgtgtggtg attataaggt taccatcaat ccccatttgc tcgtagacga gcatccacta      1680
     ccaactgttg aggaattatt cgcaactgtt gcggggggag ataaattctc caaaattgat      1740
     ttatcgcagg cttatttaca gcttgaagtc cggaatgagg acagaaagct acttactctc      1800
     agcacacata aggggcttta tcggccaacc agattgatgt atggtgtggc ttccgctcct      1860
     gctgtgtttc aaaggctgat ggagcagatc ttgcagggca ttcctggggt cacggtattc      1920
     atagatgaca ttcgtattac agggcctgat gatgaatctc atttgcgtag attggaggaa      1980
     gtgctgagac gattggaggc acatggaatg cgtgccaatc gtgataagtg tgagtttttc      2040
     gcgagtaata tcgaatactg tggatactcg gtggataaat gtggtatcca taagctgcaa      2100
     tcgaaggtag atgctattca aagcatgccg gttccaaccg acaaagagca agtgcgctcg      2160
     tttgtcggac tcgttagtta ctatggtcga ttcttcccca atctgagtac cattttgtat      2220
     ccactgaata atctcctcaa agatgatgtc ccttttgcat ggtcaaaaga gtgcgataaa      2280
     tctttcaatt tcgtaaagaa ggaaatgcag tctgatcggt ttctggtcca ttttgatacg      2340
     acgctccctc ttgtgcttgc gaccgatgct tccccctacg gcgtcggtgc cgtactgagt      2400
     caccggttcc cggatggaac tgagcgacca ctgcagtacg cttctcaaac gttgactcgc      2460
     actcagcaaa aatactcgca gattgataaa gaagcctatg ccattgtatt tggcattcgc      2520
     aagttttatc aatatctttt cggacgtagg ttcactttgg tgaccgacaa caagccagtt      2580
     agccagatat tttctgaaag taaaggtctt ccgacgatga cggctatgcg tatgcaacat      2640
     tacgctgctt ttctccaaaa cttcgattat tgtattcgat accgccgttc atctgaccat      2700
     tgcaatgctg atgccatgtc acgtctgcca gttgctacaa ctgatcccga aaacgaaatt      2760
     gaggagcctg atgctatcga gatcaactcc attcaaacat tgcccttaac tgtggaagat      2820
     ttaggatctg ctactcttgc tgatagtagt gtacgagagt tgattcgcgg tttgagatcc      2880
     ggtagaacgg ttgacgccag gtttcgcttc ggcatcaatc aggaagagtt taatctgcaa      2940
     agagactgta ttatgagagg tattcgagta tacgttcccc cgtccctcag gcagaaagtg      3000
     ctcaatgaat tacattcgac acactttggt gtttccagga tcaaatcctt agcgcgaggc      3060
     tattgttggt gggaaggcat cgacagagat gttgaaaatc ttgtcaacaa ttgtgcttca      3120
     tgtcaggcta ctagatcaaa tcctcctaaa atctcgtatc actgttggga gtctccgtct      3180
     gaaccattcc aacgcgtaca cgcggattac gcaggccctt tcatggggta ctactatctt      3240
     atcatcatag acgcttactc taagtggcct gaagtccata ttgtcaagaa catgacaaca      3300
     gaaactacga ttcgagcctg tcgacaattc ttcagtacat acggtcttcc ctctgtgttt      3360
     gttagtgata atggtccaca attcacatcg tgtgaatttg cgaagtttct aaaaatgaat      3420
     ggtgtcgttc ataagcttag cgcaccctac catccagcca caaatggcca ggcagaaaga      3480
     ttcattcaaa caatgaaatt aaagctgaag gccatcgact gtgatcgatc ccaaattcat      3540
     ggcgagttgt gttccatact gatgtcgtac agaaaaatga ttcatcctgc tacaggactt      3600
     tccccttcaa tkatggtgta cggtcgtcaa atccgctccc gtatagatct gatgattccg      3660
     tccagcaatt cgaatgttcg cgaagcccta ggtcgattcc gtgagctaga actaggtact      3720
     agggtatccg cacgtgagta tgtccatgac aacaaatggg agttcggtat tgtccagaaa      3780
     cgtctaggta aattgcatta cctaatctta ctagatgacg gtcgtgtttg gaaacgccat      3840
     attaaccagt tacgaagcat tggccaaggg attgcgagct cttcaacgtc cgaattttcc      3900
     gcacgcggtg accggtctga acatgtgcaa gaccatactg tcgcaataac tccgattgag      3960
     cctacagttt ctggaactgg aagtgctcag catgactctg acaatataca tgacgaaaac      4020
     gttccattat cctcacccaa cgttaccgcg aaacctgcta ctcctttccg atcttcaact      4080
     gcaccggtat ccattgcggc ggatcatgct gagacccaga gaccagcggg ttcaggtggt      4140
     ttgttggtgg atcaaggttt gcgacgctcg gggaggacta ttcgtccacc tactcggctt      4200
     gacctctaac gttgtggaga aacttcttac ccgagggaga gc                         4242
//
ID   Gypsy-310_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-310_;
KW   Gypsy-310_AA-I; Gypsy-310_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 391-391 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 227 BP; 67 A; 58 C; 44 G; 58 T; 0 other;
     tgttataacc tggcagcact ggacgctacc aaccgcaacg agaacacttc cgccgacgat        60
     gcgttcactc ggcgaacgtg ccagaataag tagtgcaacc acgagagcaa catcgccatt       120
     attgactctc tattaaaaca cataaaataa ataagtttat tcgtttaacc ggtagatttc       180
     aattgcttgt ccccattcgc gattcggact gtcgtgtcgt tacaata                     227
//
ID   Gypsy-311_AA-I repbase;    DNA;    INV; 4303 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-311_;
KW   Gypsy-311_AA-I; Gypsy-311_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4303
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4303
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           15..4274
FT                 /product="Gypsy-311_AA-I_1p"
FT                 /translation="MATTAESRSESSGSTDAGAELAAGAGGVAGAGGAAGA
FT                 AIAGFPFAGMQSSFTIDPFDRHKMKWSRWVERLEGAFNLFGVQPNSRLFFL
FT                 LHFMGGETYDILCDKLAPDKPQQRTYTDIVAALENHFNTEPLEILENFRFK
FT                 CRRQGDDRPDESIDEYLIALRKLAITCKFGDYLHTALRNQFVFGLKDRTIQ
FT                 SRLLEVRDLTLTRARDMAVSMELSSKGGREMQSRQERPELNLVDRSRSSGT
FT                 KVQVKGANKNKTNKESLSAGKKGECYRCGSSTHFANKCPHIHTVCHFCNVA
FT                 GHLQRVCLKAKKGKTTKSAAHLLEEGSTTGSNENEVVTLEELCKLDATSDV
FT                 HSPKFWLDVKVNGKEIRFEIDTGAPVSIMNVEDQQKFFAGKKLHPPDMELV
FT                 SFCNTNIGIEGMLNVAVEYGTERVSLPLYVTSMRKHPLLGRQWMRSLRIDL
FT                 NEVAYSEVHTLTAAAPTPENVSVGQPEVSTTEVRALVRRYANLYDDSIGKI
FT                 RGLSAKLRLKSNTNPVYIKARPVPFSLRGAVEQELDKLVKDGVLEKVNHSA
FT                 WATPIVPVMKSNNRVRLCGDYKITVNPNLIIDEHPLPTMEELFANVAGGDK
FT                 FSKIDLTQAYLQLEVEEEDREVLTLSTHKGLYRPTRLMYGVASAPAIWQRL
FT                 MEEILSGIPGVTVFLDDIRVTGPNDHEHLRRLTEVLKRLNAYNMRINIEKC
FT                 QFFTNEIEYCGYRIDKTGIHKVRSKVEAIHHMPTPESKDQVRSFVGLVNYY
FT                 GRFFPNLSTTLYPLNNLLKNSVPFVWTKQCQAAFDSVKKEMQSDRFLVHYN
FT                 PSLPLILATDASPYGVGAVLSHVYPDGSERPISYASQTLNATQQAYKQVDR
FT                 EAYAIIFGIRRFYQYLYGRRFILVTDNEPLKQILSDTKGLPKMSALRMQHY
FT                 AIFLQSFDYSIKFRPTKQHANADAFSRLPLKTKAPDNVIEETDMLEVNMIE
FT                 TLPLTVGELAKATAADHTVKPLLEGLRSGRTVEPSHRFGVDQSEFSLQKGC
FT                 ILRGIRVYIPPILREKVLSELHSTHFGMTRLKTLARGYVWWQSIDSQIEEM
FT                 VRNCSHCQSMRAEPAKAPTHCWEQPAKPFERIHVDFAGPFMQSYFIVLVDA
FT                 YTKWPVVKILNNITTATTIQVCREYFATYGISSVLVSDHGVQFTSDAFQDF
FT                 LRKNGVYHKMGAPYHPSTNGLAERFIGTFKAKLKSLKCDKSMLHAKLCNIL
FT                 LTYRNTIHPATGKSPALMVYNRSLRSRLDLMIPNSKDAVKDVQGKTRDIAE
FT                 GARVAARDYIDSDRWKYGVVAEKLGKLHYYVKLDDGRTWKRHIDQLREVGS
FT                 SLETTRTLLLRESPNIPAVVSQQAMDSDANITRPNISADNISSNGSVVQPE
FT                 FPRQPIADASSVGVNNAKQPGSVDQDSTLSIPPVVKDYRQSPRRSGRVTRP
FT                 PTRLDL"
XX
SQ   Sequence 4303 BP; 1235 A; 950 C; 1084 G; 1034 T; 0 other;
     attggccgac gaggatggcc actacggcgg aatccagaag cgaaagttcc ggatctaccg        60
     atgcaggtgc ggaattggct gccggtgccg gcggtgttgc aggagcagga ggtgctgcag       120
     gagccgccat tgctggtttt ccatttgctg gtatgcagtc ttcattcacc atcgacccgt       180
     tcgaccgtca taaaatgaaa tggtcgcgat gggtagagcg gctggagggg gcgttcaatt       240
     tgtttggggt gcagccgaat tccagattgt ttttcctact tcacttcatg ggcggcgaaa       300
     cgtacgacat tctctgtgac aaattggcac ccgataaacc tcaacaacgt acgtatactg       360
     acattgttgc tgcgctagag aaccatttca acacggagcc acttgaaatt ctggaaaact       420
     tcagatttaa gtgccgaaga caaggggatg atcgcccaga tgagtccatc gacgaatatt       480
     tgatagctct tcggaagcta gctatcacgt gcaagtttgg tgactacctg cacaccgcat       540
     tacgtaacca attcgttttt gggctcaagg atcgaaccat ccagtctcga ttgttggaag       600
     tacgtgacct gactttgact cgtgctcgtg acatggcagt ttccatggaa ctttcgtcca       660
     agggtggaag agagatgcaa tccaggcagg aaagaccaga gctcaacctg gtggatcgat       720
     cgaggagcag tggaaccaag gtacaggtaa agggtgcaaa taaaaataaa acgaataaag       780
     aatcattgag tgcgggaaag aagggtgaat gctacagatg tggtagctct acacattttg       840
     caaataaatg tccacatatc cacactgtct gccacttttg taatgtggct ggacacctac       900
     aaagagtgtg cctaaaagcg aagaaaggga agactacaaa atctgctgca catttgctgg       960
     aggaaggttc cacgacgggt tcgaacgaga acgaggtcgt cacgttggaa gaattgtgca      1020
     aactggatgc aacttctgac gtccacagtc ccaaattctg gttggatgtc aaggttaatg      1080
     gaaaggagat acggttcgag atcgatacgg gtgctcctgt ttccattatg aacgtggagg      1140
     atcaacagaa gtttttcgcc gggaagaagc tacacccacc ggatatggag ctggttagtt      1200
     tctgtaatac gaatatcggt atcgaaggta tgctgaatgt tgccgttgaa tacggaaccg      1260
     aacgggtgtc ccttcctctg tatgttacca gtatgaggaa acacccactg ctaggccgtc      1320
     aatggatgcg aagtttgcgg attgatctca acgaagttgc ctattcggaa gtgcatacgc      1380
     ttactgctgc tgctcccact ccggagaatg tttctgttgg acaaccggag gtttctacta      1440
     ctgaagtcag agcattggtc cgaaggtacg caaatctcta cgacgattcc atcgggaaga      1500
     ttaggggttt gtctgcgaag ctacgtttga aatcaaatac taatccagta tacatcaagg      1560
     cacgaccagt accattttct cttcgtggag ctgttgaaca agaactagac aagctagtta      1620
     aggatggtgt cctggagaag gtcaaccata gtgcgtgggc cacgcccata gtacccgtga      1680
     tgaagagcaa caatcgggtg aggctatgcg gcgattataa aattacagtt aaccctaatc      1740
     tgatcattga tgaacatccg ctacctacga tggaggaact gtttgctaac gttgctggag      1800
     gggacaagtt ttcgaaaatt gacttgactc aagcctacct acagcttgaa gtcgaggaag      1860
     aggatcgaga ggtgttaacc ttaagcacgc ataagggcct ctaccgacca acgcgattga      1920
     tgtacggggt tgcgtccgca ccagcaatat ggcaaagatt gatggaggag atcttgagcg      1980
     gaataccggg cgtaactgta tttcttgatg acattcgtgt tacggggccg aatgatcacg      2040
     aacatctgcg taggctgaca gaggtactca agcgtctcaa tgcctacaat atgcgaatca      2100
     acattgaaaa atgtcagttc ttcaccaacg aaatagaata ttgcggatac cgaattgaca      2160
     aaactggtat tcataaggtc cgttcaaagg ttgaagctat tcaccatatg ccgacacctg      2220
     agagcaagga ccaggttcgc tcattcgttg ggctagtaaa ttactacggg aggttctttc      2280
     ctaacctcag tacgacgctg tacccgttaa acaacctact taagaattct gttccattcg      2340
     tttggacaaa acagtgccaa gcggcgttcg atagcgttaa gaaggagatg caatcggaca      2400
     gatttctagt ccattacaac ccttcactac cgttgatact ggcaacagat gcgtcaccat      2460
     acggggttgg cgctgtgctc agccacgttt accctgatgg ctcagaacgg ccaatatcgt      2520
     atgcatctca gacattgaat gcaacgcaac aggcgtataa acaggttgac cgcgaggcct      2580
     acgcgataat tttcggaatc cgacgattct atcaatacct gtacggaagg cggttcattc      2640
     ttgtgacgga caatgaacca ctcaagcaaa ttctatcgga cacgaagggt cttccgaaaa      2700
     tgtcagcgct aagaatgcaa cactatgcga tattcttgca atcgttcgac tacagtatca      2760
     aattcagacc gacgaaacaa cacgcaaatg ctgatgcttt ttcgcgactg ccgctgaaga      2820
     ccaaagcacc tgacaacgtt atcgaggaga ccgatatgtt ggaggttaac atgatcgaaa      2880
     cgctaccatt aacagtagga gagctcgcaa aggctactgc tgcggatcac accgtaaaac      2940
     cattactgga aggtttgcgt agtggaagaa ctgtagaacc aagtcatcgc tttggagtag      3000
     atcagtcaga attctccttg cagaaaggct gtattctacg tggaatcagg gtctacattc      3060
     caccgattct tcgagaaaaa gttctcagcg aattgcactc gacacatttt ggaatgacaa      3120
     gactgaagac gctggcccgt ggatacgttt ggtggcaaag tattgatagt cagattgaag      3180
     agatggtgag aaattgcagc cactgccaat ccatgagagc tgaaccagca aaagcgccaa      3240
     cacactgttg ggaacaacca gcgaagccgt ttgaacgaat tcacgtggac ttcgctgggc      3300
     cgttcatgca aagttatttt attgtgttgg tagacgccta tacaaagtgg cctgtggtga      3360
     aaatactaaa caacatcact acagcgacta caatacaagt ctgccgggag tactttgcaa      3420
     cttatgggat ttcttcggtc ttagtgtcgg atcacggagt ccagtttact tccgacgctt      3480
     ttcaagattt tcttcgcaag aacggtgttt accataagat gggagcgcca taccacccat      3540
     ctacaaatgg attagcggaa aggttcattg ggactttcaa ggctaaactc aaaagtttga      3600
     agtgtgacaa gtcgatgttg catgctaaat tgtgcaacat tctgctcaca tacaggaata      3660
     caatccaccc agcaactgga aaatctccgg ccttaatggt gtataatcgt tcgctgcggt      3720
     ctcgcttaga cttaatgatt cccaattcca aagatgctgt gaaggatgtc caaggaaaaa      3780
     cccgagacat tgcggagggg gcgagagttg cggctagaga ctacattgat agtgacagat      3840
     ggaaatacgg agttgttgct gaaaaactcg gtaagctgca ctactacgtg aagcttgatg      3900
     atggcagaac atggaaaagg cacatcgatc agctcagaga agttggttct agtttggaaa      3960
     ccactagaac actgttactg cgtgaatcac ctaatattcc agctgttgta tcgcaacaag      4020
     caatggatag tgatgcgaac attacacgcc cgaacatcag tgcagataac atctcttcaa      4080
     acggttcggt ggtgcaaccg gaattccctc gacaaccgat agctgatgca tcgtctgtag      4140
     gagtcaacaa tgcgaaacaa ccgggttcag tggatcagga ttcaacactc tccattccac      4200
     cggttgtgaa agactaccga cagtcaccaa ggagatccgg cagggtaaca cggccgccaa      4260
     caagacttga cctatgaatt gcattaatta aggggggaag aga                        4303
//
ID   Gypsy-311_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-311_;
KW   Gypsy-311_AA-I; Gypsy-311_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 392-392 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 58 A; 45 C; 38 G; 73 T; 0 other;
     tgttatagcc accttgaatt cttatggcta tcctattttg taccatacct tatttgtaaa        60
     cacactttga ctcccctact tatgtttacc aactgaactg aataaaacca ttgtataaga       120
     gagtacgaat agtagagaac gtgtttttgc tttcgtggta agaatttgcc gtccgaattg       180
     ctagcggatt gtgcttcgcc cgtgatctac aaca                                   214
//
ID   Gypsy-312_AA-I repbase;    DNA;    INV; 4331 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-312_;
KW   Gypsy-312_AA-I; Gypsy-312_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4331
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4331
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 438-438 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..4320
FT                 /product="Gypsy-312_AA-I_1p"
FT                 /translation="MAQASGEPAATRAEQPIGDIQTAIFQITQLLQRIAAP
FT                 NQPNPEQTLEALSSNISEFVFDPENGITFEKWFARYTDLFESDARHLDDAA
FT                 KVRLLLRKLDTTSHSRYLNYILPRLPREITFNDTVETLKKIFGEQTSLFRR
FT                 RFQCLQLTKSEGDDVITYGGRVNRACEDFDFANLTIDQFKCLVFVTGLKAT
FT                 KHADIRTRLLTRMENERPDAPVTLQTLIDEFQQLVNLKADNNLIEHPTSSK
FT                 ATVHAISEKKXPTDVSKSSFKPEVKSPKTPCWQCGQMHFVKDCTYSSHLCK
FT                 SCNRVGHKEGYCGCFTKPSSAPTGDHPSQRKGKKQHKKTKYQANVVHTVNH
FT                 TGTLNRYVSTTLNGRQATLQLDSGSPITIISEETWRKIGSPALKPSTCEAL
FT                 SASRDPLPLLGEFTCLVGVNNIIKPGLCRVTSVKGLNLFGSEWMDLFDMWT
FT                 KPLSSFVNQVNPSNSNSFSGKHFLMRFPEVFQDTLGHCHKAQVSLHLKPDA
FT                 RPVFRPKRPVPYNAIPLVDAELDRLQQLGIISPVEYSDWAAPIVAVRKPGG
FT                 KIRICADYSTGLNAMLEAHNYPLPTPEDIFSKLAGSKVFSIIDLSDAYLQV
FT                 EVDGASKRLLTINTHRGLFNFNRLAPGVKSAPGAFQQLMHTMIAGIPGVEV
FT                 FLDDFIVFSETEEQHYQTLCILFDRLQEYGFHLKLEKCHFYQQEIKYLGHI
FT                 VDEHGLRPDPEKTAAISSMPRPTDVSTLRSFLGAVNFYGKFIREMHQLRRP
FT                 LDQLLKKDAKFVWTAECQQAFTDIKHVLQSDLLLTHYDPSLDIIVAGDASK
FT                 TGIGAVIMHRFPDGRIKAIAHASKTLSSAEQNYGQIEKEALALVFAVTKFH
FT                 RMLLGRRFKLQTDHQPLVKVFGSKKGIPIHTANRLKRWALTLLGYDFEIEF
FT                 VSTNNFGYADVLSRLISNHERPEEEFVVAQVNVDADLQYVLDNTFEQLPVT
FT                 FQMVKQATSDDPIMQKLIRFIKNGWPSNGKSIRDSALQSFFHRRESLSLLQ
FT                 GCVMMMERLVIPECFRKKLLKQLHRGHPGIERVKAIARSTIYWPNIDDDIG
FT                 EYVRRCSSCANAQKSPPQSEPHPWQSAEGPWERIHVDYAGPINGFSYLVIV
FT                 DSFSKWPEIFRTKSTTASATIGFLQESFARFGVPKVIVSDNGTQFTGYDFR
FT                 TFCENLGIIHFRTAPFHPQSNGQAERFVDTLKRSLRKIQEGEGLPASAALQ
FT                 TFLQVYRSTPSNLLDGKSPSEVLNGRRMRTTLDLLKPSSAPPQAPAPIKLS
FT                 QSRKFAAGATVFAKVHKNNSSWRWQSGVVIEAIGNVHYNVLLDAASGRKRL
FT                 IRSHIDQLRVNDSAKQERAEIELPLSVLLGDFGMASSAEAPREQPVPIAAE
FT                 DSSFLSAQDLPDIPEDQDQPEPINQPGPSGSSTPLPSRPTRTVKLPRHLQD
FT                 YVLS"
XX
SQ   Sequence 4331 BP; 1202 A; 1174 C; 1020 G; 934 T; 1 other;
     aattttggcg acgagtttta gtgaaaattg aaaatcgaag caaattgcaa agccgaaact        60
     tcgacaatgg cgcaagcatc aggagaaccg gccgcaacac gtgctgagca accgatcgga       120
     gacatccaaa cggcgatttt ccagatcacc cagcttctgc agcggattgc agctccaaat       180
     cagccgaatc cggagcagac cctggaagcg ctttcctcaa acatcagcga gttcgttttc       240
     gacccagaga acggcatcac gtttgagaag tggttcgctc ggtacacgga tcttttcgag       300
     agcgacgcac gccatttgga cgacgcagcc aaagttcggc tgttgctgcg aaaactagat       360
     actacatccc acagtcggta tctaaattac atcctcccac gattgccgag ggagatcacg       420
     ttcaacgaca cggtggaaac gctgaaaaag attttcggcg aacaaacctc acttttccgt       480
     cgtcggttcc agtgcctcca actgacgaaa agtgaaggcg atgacgtcat cacgtatggc       540
     ggaagggtca accgagcgtg tgaagacttc gattttgcga acctgacaat cgaccaattc       600
     aaatgtctgg tgttcgtcac cggactgaag gcaaccaagc atgcggatat tcggacgaga       660
     ttgctcaccc ggatggagaa cgagagacca gatgcgccag tgactcttca aactctcatc       720
     gacgagttcc agcagctcgt taatctgaag gcggacaaca atttgattga gcatccaacc       780
     agctccaaag caacagtgca cgccatcagc gagaagaaga sgccaacaga cgtttccaaa       840
     tcttcgttca agccggaagt caaatccccg aagacgccat gctggcaatg cgggcaaatg       900
     cacttcgtca aagattgcac atacagcagc catctgtgca aatcatgcaa ccgtgtagga       960
     cacaaggagg ggtactgcgg ttgtttcacc aagccatcaa gcgcgcctac tggtgatcat      1020
     ccaagccaga ggaaaggtaa gaagcaacac aagaagacca agtaccaagc caacgtcgtt      1080
     cacacggtga atcacaccgg tacactcaac cggtacgtct caacaacgct gaacggtcgt      1140
     caagccacgc tgcagcttga tagcggatca ccaatcacca taatcagtga agaaacgtgg      1200
     agaaagattg gatcacctgc actcaagcca tcgacctgtg aagcactctc cgcatccaga      1260
     gaccctcttc cactgctggg ggaattcacc tgccttgttg gagtcaacaa catcatcaag      1320
     cctggcctgt gtcgagtcac gtcagtcaag ggactcaact tattcggctc ggaatggatg      1380
     gacctcttcg acatgtggac gaaaccattg tcatcgttcg tcaatcaggt gaatccttcc      1440
     aattcaaatt ccttttctgg aaagcacttc ctcatgcggt tccccgaagt ttttcaggat      1500
     actcttggac actgccataa agcccaagtc agcctccacc tgaaaccaga tgccaggccc      1560
     gtcttccgac ccaaacgccc tgtaccgtac aacgccattc cattggtcga cgcagagctc      1620
     gatcgtctgc agcagttggg tatcatctca ccggtagagt actccgactg ggcagcacca      1680
     atcgttgcgg ttcggaagcc tggtggtaaa attcgaattt gtgccgacta ttcgaccgga      1740
     ttgaatgcca tgctggaagc gcacaactat cctcttccaa cgccggaaga catattctcc      1800
     aagttggccg gtagcaaggt gttcagtatc atcgacctat cggatgccta cctacaggta      1860
     gaagtcgatg gcgcatcaaa acgcctgctc accatcaaca cacaccgggg cctattcaac      1920
     ttcaacaggc tggctcctgg tgtcaagtca gcacccggcg cgtttcagca actgatgcat      1980
     accatgattg ctggaattcc tggcgtcgaa gtattcctgg atgacttcat agtattcagc      2040
     gaaaccgagg agcaacacta tcaaacgctc tgcatcctct tcgaccgttt gcaggaatac      2100
     gggttccacc tgaaactaga aaaatgccat ttctaccagc aggaaatcaa gtacctggga      2160
     cacatagtag acgaacatgg actgcgtcca gatccggaga aaacagctgc catttcttcg      2220
     atgccacgtc caactgatgt ctccacactg cggtcattcc tgggtgcagt aaatttttac      2280
     ggaaaattca tccgtgaaat gcatcagctt cgaaggccgc tggatcaatt gctgaagaaa      2340
     gatgcaaagt tcgtctggac tgccgaatgc caacaagctt tcaccgacat caagcacgtt      2400
     cttcagtcgg atctactcct cacccactac gacccctcgc tcgatatcat cgtagccggt      2460
     gatgcatcca aaactggcat aggagcggtc atcatgcatc gctttcccga cggtcgaatc      2520
     aaggcaattg cgcatgcctc caaaacactg tcgtcggccg aacaaaacta cgggcaaatc      2580
     gaaaaagaag cgctcgctct ggtctttgct gtcaccaagt ttcaccgcat gctgttggga      2640
     cgaaggttca agttgcagac tgaccatcag ccactcgtga aagtcttcgg gtcgaagaaa      2700
     ggaattccca ttcacacggc caaccggctg aagcgatggg cactcactct gctcggatac      2760
     gatttcgaaa tcgagttcgt gtccacgaat aatttcggct acgccgatgt actatcgcgg      2820
     ctcatcagca atcacgagcg tccagaggaa gaattcgtcg tggcacaagt caatgtcgac      2880
     gccgatctgc aatacgtttt ggataacacc ttcgagcaat taccagtcac gttccaaatg      2940
     gtgaagcaag ctacatcgga tgacccaata atgcagaaac tcatccggtt tatcaaaaat      3000
     ggctggccaa gcaacggcaa gtcaattcga gattcggcgc tacaatcatt cttccaccgg      3060
     cgcgaatcat tgtcgctact tcaagggtgc gtgatgatga tggaacgact ggtgataccg      3120
     gagtgtttcc ggaaaaagct tctgaagcag ctacatcgag gtcatcctgg tatcgagcga      3180
     gtaaaagcca tcgctcggag caccatctat tggccgaaca tcgacgacga catcggtgag      3240
     tacgttcgac gctgctccag ttgtgcaaat gcacaaaaat caccaccgca atcagagcca      3300
     catccgtggc agagcgcaga aggaccatgg gaacgcatcc atgtcgacta tgccggaccg      3360
     atcaacggat tcagctatct ggtaatcgtc gactcgttct caaagtggcc ggaaattttc      3420
     cggacaaaat cgaccacagc atccgctacg attggtttcc tccaagagag cttcgccagg      3480
     ttcggcgtac caaaggtgat tgtgtccgat aacggaacac agttcactgg atacgatttt      3540
     cgtacattct gcgagaatct gggcatcata catttccgca ccgcaccgtt ccatccccag      3600
     tcgaatggac aagcggaaag gttcgtcgac acgcttaaga gatcgcttcg caaaatccag      3660
     gagggagaag gattaccagc atctgcagct cttcaaactt ttctgcaggt ttatcgatca      3720
     actccatcca atctgctcga cggtaaatcc ccttccgaag tattgaatgg tagacgaatg      3780
     cgaacaacac tggatctact caagccttcg tcagcgcctc cacaagcacc agcaccaatc      3840
     aaactttctc aatcacgaaa attcgcagca ggagcaaccg tctttgcgaa ggttcataaa      3900
     aataattcga gctggaggtg gcagtccgga gttgtaatcg aggcgattgg gaacgtacat      3960
     tacaatgtac ttctggatgc agcatctggg cgaaagcggt taatacgatc gcacatcgac      4020
     caacttcgag tgaacgattc tgcaaaacaa gaaagagcgg aaattgaatt accgttgtct      4080
     gtattgttgg gcgattttgg aatggcatca agtgcagagg cacccagaga gcaaccagta      4140
     ccgattgcgg ctgaagattc gtccttcttg tcagcacaag acctacctga tattcccgaa      4200
     gatcaagatc agcctgaacc aatcaatcag ccaggaccat ccggtagttc aacgccgcta      4260
     ccatcgagac caacaagaac cgtcaaactt ccacggcatc ttcaagacta cgttctctct      4320
     taggggggag a                                                           4331
//
ID   Gypsy-312_AA-LTR repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-312_;
KW   Gypsy-312_AA-I; Gypsy-312_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-222
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-222
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 393-393 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 222 BP; 79 A; 41 C; 33 G; 69 T; 0 other;
     tattaccatc ccataatatt aagccagtac tacaaccaac cataataaat tatagcactt        60
     aatgcaaatt tgaatttcaa attatgagtt ggatcgcagt aagcatggtt tgctgcggta       120
     tccatagcaa ctagaatttt cactccattt gaacagttag taatgagcac gaaataaaac       180
     tagacgcttt ttgtaaaaac gtgttcgctt tcaattgtaa ca                          222
//
ID   Gypsy-313_AA-I repbase;    DNA;    INV; 4385 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-313_;
KW   Gypsy-313_AA-I; Gypsy-313_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4385
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4385
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 439-439 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4372
FT                 /product="Gypsy-313_AA-I_1p"
FT                 /translation="MSREGTPSWGANEAEAISFQQALTQILAQQQRLITQL
FT                 SQQMSATQLGLKELSRDDVALNALASNINEFXYAPEEGCTFDSWYSRYSEL
FT                 FDKDAKKLDDSAKVRLLMRKLNPSAHERYTSFILPKQSNEFTFSETIEKLK
FT                 SLFGSPVSIFHRRYQCLRTAKDDTEDIVAYSCKVNRACVDFKLADLSEEQF
FT                 KCLIFVCGLKSSKDSDIRMRLITKLNESSDITLAKIVEDCRSLVNLKNDNV
FT                 LVEKPSTSNVHAVKYNKKTPKPKYQSSGNGGSSSADQPRSPCWSCGGMHFS
FT                 KDCQFREHTCRDCGKKGHKEGYCACFAGKPAGTNAKKNARNQKSTKVVSVN
FT                 SVSHGRKYAEVRINNVPVRLQVDSASDISIITDAMWKQIGKPEASPPSCQA
FT                 VTASGEPLNIASEFWCDVTINGVSKPGLCRVMVPEINLSVLGSDWMDKFGL
FT                 WDVPINSFCNQVSSRSSSEVASIQAKFPEVFTNKMGLCGKTKVKLQLRGNP
FT                 TPVFRPKRPVSYSMEEAVEEEIQRLHNLGVLKPVDFSDWAAPIVVVRKPNG
FT                 RVRICADFSTGLNDVLESNQYPLPLPEDIFSKMSGCRYFSHIDLSDAYLQV
FT                 EVDEDSQNLLTINTHRGLYQFTRLSPGIKSAPGAFQQLVDAMLAGLKFTCG
FT                 YLDDVLVGGRTEGEHNQNLERLLNRLQEYGFTVRLEKCTFNMEQVNYLGQI
FT                 MDGDGVRPDPDKVAAIANMPPPHDVPSLRSYLGAVNYYAKYIPEMRKLRYP
FT                 MDKLLKAGTKWNWSADCQNSFDRFKELLMSPLMLTHYNPRLDIVVSADASS
FT                 VGIGARIAHQFPDGTIKAICHASRSLTSAEENYSQIEKEGLALIFAVTRFH
FT                 RMLFGRHFTLETDHKPLLAIFGSKKGIPVYTANRLQRWALTLLLYDFDIQY
FT                 VSTESFGYADLLSRLINNHIRPDEEYVIAAIEMENTFQDAVQQSLDFLPLT
FT                 YKSIQEETKADPVLQEVVKHVQRGWPVKKSDISESCQQFFLRKDGLSVISD
FT                 CLAYGERLVIPSKFHKKVLQMLHKGHPGVERMRAVARSYVYWPTIDDSIAQ
FT                 LVLSCKECAMAAKSNTRTKLKSWPVPVKPWQRLHIDYAGPVDDWYYLILVD
FT                 AFTKWPEVVPTRRITTSATLEILQGIFARFGMPETIVSDNGRQFISEQFER
FT                 YCDNNGILHLKTPPFHPQSNGLAERFVDTFKRTLKKITAGGECLSEAINTF
FT                 LLCYRSTPNRSAPEEKSPAELLLGRPLRTSLDLLKPPATFHKVEQNKQDDQ
FT                 YNRKHGAKTISYNPKDLVWAKVFKNNSWNWEAGQVLERVGNVIYNVWLQQK
FT                 NTLIRSHCNQLRSRSESETVDATENSVQVPLDILLDTWGLNTQTESESQHD
FT                 LDLDSVPEEPVQKRTKPSSDSQRSHQRPPRRVEQHPSIPRHSSRRRKVPVR
FT                 YDPFHLY"
XX
SQ   Sequence 4385 BP; 1246 A; 1090 C; 1050 G; 995 T; 4 other;
     atttggcgac gagtaaaact caaaacggtt cgcggaattt tgcgtagatc ggtgtttttc        60
     gcgatcgggg agtaaattcg agattcggca agagtagagg ttagctgcta tgtctcgcga       120
     aggaacaccc agctgggggg caaatgaagc ggaagccatm tcattccagc aagccctgac       180
     gcagattctc gctcaacagc agagactgat tacccagttg tcccagcaga tgtcagcaac       240
     acagctcggc ctgaaggagc tttcccgtga cgacgttgca ctgaatgcgc tagcaagcaa       300
     catcaacgag ttcsgctacg cacctgagga ggggtgcacg ttcgattctt ggtactcccg       360
     ctactcggaa ttgttcgata aggatgccaa gaagctggac gattccgcga aagtccgact       420
     tcttatgagg aagctcaatc catcggccca cgaacgatat acaagcttca ttcttccgaa       480
     acaatccaac gagttcacct tcagcgaaac tatagagaag ttgaaatcgc tcttcggatc       540
     acccgtctct attttccacc ggcggtatca atgcttgcga accgccaagg atgacacgga       600
     agacatmgtt gcgtattcgt gcaaggtgaa tcgagcttgt gtggacttta aacttgccga       660
     cctgtccgaa gaacaattta aatgcctcat ctttgtctgc ggcctcaagt cktcgaagga       720
     ttccgatatt cggatgcgac taataacgaa gctgaatgaa tcatcggata tcacattagc       780
     gaaaattgtg gaggactgca gaagcctagt gaacctcaag aacgacaacg tactggtaga       840
     aaaaccatca acatcaaatg tgcatgctgt gaagtacaac aagaagactc ccaaacctaa       900
     ataccaatca tcgggtaacg gaggtagcag tagtgcagat cagccgcgtt ctccatgctg       960
     gtcgtgtgga ggaatgcact tttcaaagga ctgccagttt cgtgagcaca catgtcgtga      1020
     ttgtgggaag aaagggcaca aagagggcta ttgtgcttgc ttcgccggga aaccagcagg      1080
     aaccaatgcg aagaagaatg cacggaatca aaaatcaacg aaagtggtgt ccgtaaattc      1140
     cgtcagtcat ggaagaaaat atgctgaagt gcggatcaac aacgttcctg tacgccttca      1200
     agttgattcc gcgtcggaca tcagcataat aaccgacgcc atgtggaagc aaatcgggaa      1260
     accagaggca tctcctccat catgccaagc cgtgacagct tcaggagagc cgctcaacat      1320
     cgcgtccgag ttctggtgtg acgtgaccat caacggtgtc tccaaaccag gtttgtgtcg      1380
     tgtcatggta ccggaaatta atctttcggt tctaggttcc gattggatgg ataagtttgg      1440
     cctttgggat gtgcctatca attctttctg caaccaagtc agcagcaggt cgtcgtcaga      1500
     agtagcatca atccaagcga aattcccgga agtattcacc aacaaaatgg gactatgcgg      1560
     caaaacgaag gtcaagcttc agcttcgcgg aaatcccaca ccggtgtttc ggccaaagcg      1620
     tcccgtctcc tacagtatgg aagaagcagt cgaagaagaa attcagcgtc tacacaatct      1680
     gggggtcctc aaaccagtag acttctctga ctgggctgct cctattgtgg tcgtccgaaa      1740
     gcccaacgga agagtacgga tttgtgccga tttttcgacc ggtttaaacg acgtcctcga      1800
     gtccaaccaa tatccacttc cgctacctga ggatattttt tcgaagatgt caggatgtcg      1860
     gtacttcagt catatcgacc tttccgatgc ctatcttcag gtagaggtcg atgaagacag      1920
     ccaaaatctc ctcacaataa acacccacag ggggctctac caatttacgc gcttatctcc      1980
     tggcatcaag tcagccccgg gggcttttca gcagttggta gatgcaatgc tcgcaggact      2040
     caagttcacc tgcggctacc tggatgatgt tcttgtgggc ggccgaactg aaggggagca      2100
     taatcaaaac ctcgagcggc tgctgaaccg gttacaggaa tatggtttca ctgtgcgact      2160
     cgaaaaatgc actttcaaca tggagcaagt aaattacctt gggcaaatca tggatggcga      2220
     tggtgtccga ccagaccccg acaaggttgc tgctattgcc aatatgccac cgccacacga      2280
     cgttccatcg ttacggtctt atttgggagc cgtaaactac tatgcaaagt acatcccaga      2340
     aatgcgaaag ttgcggtacc caatggacaa actcctgaaa gcaggaacca aatggaactg      2400
     gagtgcagat tgtcagaact cgttcgaccg attcaaagaa ctgttgatgt ctccgctaat      2460
     gctgacgcac tacaatccta gactggatat agtcgtatcg gcagacgcct catccgtcgg      2520
     catcggtgct aggatcgctc atcagttccc agacggcacc ataaaagcaa tttgtcatgc      2580
     atccagaagt ctgacatcgg ccgaagaaaa ctatagccag atagagaaag aggggttagc      2640
     cttgatattc gctgtaacac gattccaccg catgctattt ggccggcact tcacgttaga      2700
     aaccgaccat aagccattgt tggccatatt cggatctaaa aaaggaatac ccgtttatac      2760
     tgccaacagg ctacagcgct gggcgctgac cctcctttta tacgattttg acattcagta      2820
     cgtgtccacc gaaagttttg gctatgcaga tcttttgtcc aggttaatca acaaccacat      2880
     tcgccctgat gaggagtacg taattgcggc aatcgaaatg gagaacactt ttcaagatgc      2940
     tgtgcagcaa tccctagatt ttcttccgct aacgtataaa tcgattcagg aagaaacaaa      3000
     agcagatcct gttcttcaag aagtggtcaa acacgttcag aggggctggc ccgttaaaaa      3060
     gagcgatatc agcgaatcat gtcagcagtt ctttctacgt aaagacggat tatcagtcat      3120
     atccgattgc ctagcctatg gtgagcgatt ggtcatcccg tcgaagttcc acaagaaagt      3180
     ccttcaaatg ctccataagg gacaccccgg cgtcgaaaga atgagagcag tcgcccgcag      3240
     ctatgtatac tggccaacca tcgacgacag catcgctcaa cttgttctct cttgtaaaga      3300
     atgtgcgatg gctgccaaaa gcaataccag aaccaaactg aagtcatggc cggtacctgt      3360
     aaaaccctgg caaagacttc atatcgatta cgcagggcct gtggatgatt ggtattacct      3420
     tatactagtc gatgccttca cgaaatggcc cgaagtagtc ccaactcgtc gaatcactac      3480
     atctgctacg ttggaaattc ttcaaggaat cttcgcacgt tttggaatgc cggaaaccat      3540
     agtgagtgat aacggccgcc agttcatcag tgagcagttt gaacgttact gtgacaacaa      3600
     cggtatactc cacctgaaga caccaccatt ccacccgcag tccaacggtc ttgcagaaag      3660
     gttcgtcgac acttttaagc gaacacttaa aaaaattaca gcgggagggg agtgtctcag      3720
     cgaagccatc aacaccttcc tgctgtgtta ccgttcaaca cctaaccgaa gcgctcctga      3780
     agagaagtcc cctgctgagc tgttgcttgg cagaccccta cgcacatcgc ttgacttgct      3840
     taaacctcca gctacgtttc acaaggtgga acaaaataag caagacgatc aatacaaccg      3900
     caaacatgga gccaagacca tcagttataa tccaaaagac ctggtctggg ctaaagtctt      3960
     caagaacaac agttggaatt gggaagcagg acaggtactt gagcgagtgg ggaacgtaat      4020
     ttacaacgtt tggctgcagc agaaaaatac actgatccga tcgcactgca atcagcttcg      4080
     aagccggagt gaatccgaga cagtggatgc aacagaaaac tccgttcaag ttccactaga      4140
     catcctacta gacacatggg gtctgaacac acagaccgag tctgaatcac agcacgatct      4200
     ggatctggac agtgttccgg aggagccggt acagaagagg acgaaaccgt ccagtgattc      4260
     tcaacgaagt catcaacgcc caccaagaag agttgaacag catccatcca tacctcgcca      4320
     ctcttcgcgc agacgaaagg tgcctgtgag gtacgacccg ttccatcttt attaaaaggg      4380
     ggagg                                                                  4385
//
ID   Gypsy-313_AA-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-313_;
KW   Gypsy-313_AA-I; Gypsy-313_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-228
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-228
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 394-394 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 228 BP; 57 A; 51 C; 48 G; 72 T; 0 other;
     tgttgagagg accaccccta ccggagtcag cacgcagtcg gtggctcatc atctgacaac        60
     cgtcagactg acagatgccg tccacgccag accgatgggg aaatgtcatc gtccaaatta       120
     ttaatctttg tattcgccta gcattgttca agtccacatg tcgttcatat tttaataaag       180
     ttttaatttg ttatttgttg cgttaattgc gagtttgtta ttgcaaca                    228
//
ID   Gypsy-314_AA-I repbase;    DNA;    INV; 5317 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-314_;
KW   Gypsy-314_AA-I; Gypsy-314_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5317
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5317
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 440-440 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           915..5138
FT                 /product="Gypsy-314_AA-I_1p"
FT                 /translation="MAATNITTTIEPFRKGTSFADWFERIELFFSVNNVQP
FT                 DMKRGYFVTLGGPVIFSELKLLFPTTSVQEIPYEEMTSKLKSRLDKTESDL
FT                 IQRLKFNNRVQQPDETVEDFILSVKLQAEFCTFGTFKNTAVRDRILAGLRD
FT                 NSLRQRLLTEENLTLESAEKIIATWELAGTNNRNLTGTAVGLESIAYLRNQ
FT                 GRGPIGSSLNRLANTFQMAHNSNTMTTQNGSYRGPVKNRLGFRATERENSG
FT                 ERYKDRRFSAYKNDQYKSRDWRKEDNRQRQNYADIICSFCGVKGHVKRKCF
FT                 KLKNMRRDTINLVDDVDTGRNVDCQMSNLMNRMRTDESDDEENNSGDLQCM
FT                 MVSSINKINDPCLVEVTIENKNLVMEIDCGSSVTVMSKDKYFTHFKNPLSK
FT                 YDKQLIVVNGEKLKVEGEANVSVEFKGVKAQLQLLVLNCSNDFFPLMGRTW
FT                 LDIFFKEWRQFFSNSLTVNNMTTETEREAMEIKEKFPNVFLKDFSTPIKGF
FT                 QADLVMKSDEPIFKKAYDVPYRLKDKVINYLERLEKEKVITPIETSLWASP
FT                 VIIVIKKNNEIRLVIDCKVSINKVIIPNTYPLPVAQDLFAGLAGCKVFCAL
FT                 DLEGAYTQLELTEKSKRFMVINTIKGLYTYNRLPQGATSSASIFQQIMDKV
FT                 LEGIEYVYVYLDDVLIAGRNLNECKDRLLMVLNILANANIKINWEKCKFFV
FT                 SQLPYLGHIISEKGLLPCEEKISTIQKAKVPRNVTELKSFLGLINYYNKFI
FT                 PHLSSKLYLLYKLLKNDVKFIWDENCEKAFEEAKTALLNTQFLEFYDPKKA
FT                 IIVVADASGYGLGGVIAHVVQGIEKPICFTSFTLNDAQKSYPILHLEALAL
FT                 VCTIKKFHKYLYGQHFTVYTDHKPLVGIFGKSGKHSIFVTRIQRYILELSI
FT                 YDYDIVYRPSAKMGNADFCSRFPLEQSVPAEYDTDVVRSINFGKELPMDHK
FT                 KIAELTKVDKYLQNIIYYLKNGWPKRLEKQFIDVHSNQQELEIVDECLLYQ
FT                 DRVIVPQQMHSEILKLLHANHSGTVKMKQLARRTVYWYGINKDIENLVSKC
FT                 DACNGMAANMKPKATFQWTPTLRPFSRIHLDFFYFQHETFLLIVDSFSKWL
FT                 EVEKMNKGTDAGRVLKVLVEFFARYGLPDVLVSDNGPPFNSINFVQFLERQ
FT                 GIVVLKSPPYNPASNGQAERLVRTVKDVLKKFLLDKDYLDMDLGDQINLFL
FT                 FNYRNNCLTEDGRFPSENIFSFVPKQLIDLINPKKHYKRQMSQPHAITNDN
FT                 CLISNFNADLANDPINNLMEGEEVWCKNHNPHVPARWIKGHFVKRFSKNTF
FT                 QIMIGSVPTTLHRNQLRLPKRSESPIRPMITTSIERTRSPMNHRDGSSGGA
FT                 RRSPAAAEQPRRKRKSVLSSEIVSTEPRRSKRVRKENFDKDYVYN"
XX
SQ   Sequence 5317 BP; 1769 A; 836 C; 1137 G; 1574 T; 1 other;
     gttggcgacg agataaatca gtggaatttt aaagtgcatc cagaaaaagt aaggaaggag        60
     ctggaaaaag tattcgtggt gtgccatcgc gatagtattt tgtggttgga gtctggattc       120
     gacttgaaag gccactgaat ctgscagatc ttttcttcag aggcttaggt attttacttg       180
     ggtatagggt tgatttctcc ctcgacgggg aaaagattcc aacacaatcg taagtatagc       240
     tacgtgaaaa gttttgaaac gaaagtgaaa tcaaagaaaa gtgtatgcag agagagttgt       300
     aagccgacat attgtgttac gtatatgcac gaggcgcaat tttgggttgc aaatcgccat       360
     tgtgtttgac agcatcgccg gcggcatcac ttgctttctc gctcagacgt caagacaaag       420
     cgtattgaca gtggtataac aaaagctttt gcaaattgaa tcaaaacaaa acagaatctc       480
     attctattta gttgaagtaa ttgtgcgttt tttttactaa ttaaatccaa gtaatatagc       540
     aagaatttcg ccgaatttgt ttaataagag tggtttttct tccattttgt gcagatttca       600
     aggaagtgca gtgaaaattg tggttttggt ctgactggtg acgaattcgg acgaagtgta       660
     atctagctgc tgggaaacaa ttttctgctg gacaagacga gagtatcagt tactccggtg       720
     tgtttgacgc ctacaagttg gccttttctt atccggccag aggataaaac ctaaaagaat       780
     cggttttcga gacgacctgg tgagttcttt tgttgcttat tatcatatta acaaagccca       840
     ttgagagttt tggtcgcctt tgttaaccgc ggtttttttt ggttttcttt ttggggtgcg       900
     tttagtactt caaaatggca gcaacaaata taacgactac aattgaacct ttccgcaaag       960
     gaacctcgtt tgcggattgg tttgaaagga ttgagctgtt tttctcggta aataatgtcc      1020
     agcctgatat gaagagggga tattttgtaa ctcttggagg acccgttatt ttttccgagt      1080
     taaagttact tttccctact acgagtgttc aggagattcc gtatgaagaa atgactagta      1140
     aacttaaatc aaggctagat aaaacagaaa gcgatttaat tcaacgtctt aaattcaaca      1200
     atagagttca acaaccagat gagacggtag aggattttat tctttccgtt aaattgcaag      1260
     cagaattctg cactttcgga acttttaaaa acactgctgt tcgtgacaga attttggccg      1320
     ggctaagaga caattcttta cgtcagaggc tattaactga agaaaattta accctagaat      1380
     ccgcggagaa aatcatagct acgtgggagt tagcaggtac aaacaataga aatcttacgg      1440
     gtacagcagt aggtttggaa agtattgctt atctgagaaa tcaaggacga ggaccgattg      1500
     gttccagtct aaataggctc gcgaacactt tccagatggc gcataacagc aatacaatga      1560
     cgacgcaaaa tggttcctat agagggccag tgaaaaacag gcttggattt agggcaactg      1620
     aacgagaaaa ttcaggagag agatacaagg ataggagatt tagtgcttat aaaaacgatc      1680
     aatataaatc tagggattgg agaaaggagg ataataggca acggcaaaat tatgcggata      1740
     ttatatgcag cttttgtggc gtaaaagggc atgttaagcg gaaatgcttc aagcttaaaa      1800
     atatgaggag agatacaata aatttggtgg acgatgttga taccggacgt aatgtagatt      1860
     gtcagatgag taatctaatg aataggatgc gaacggacga gtctgatgac gaggaaaata      1920
     actcaggtga tttacaatgc atgatggtgt cctcaattaa caaaattaac gatccatgct      1980
     tggttgaagt aacaatagaa aataaaaact tagttatgga aattgattgt ggttcttctg      2040
     tgacagttat gagtaaggac aaatatttta ctcatttcaa aaatccttta tccaagtatg      2100
     ataaacagtt gatagttgtc aatggtgaaa agctgaaagt tgaaggggaa gcaaatgttt      2160
     cagttgaatt taaaggtgtg aaagctcaac tacaattatt agtacttaat tgtagtaatg      2220
     acttttttcc actaatggga cgaacttggt tagatatttt tttcaaagag tggagacaat      2280
     ttttctcaaa ttccttaact gtaaataaca tgacgacgga aactgaaagg gaagcgatgg      2340
     agatcaagga gaaatttcct aatgtttttt tgaaagattt ttctactcct attaagggat      2400
     tccaagcgga tttagtgatg aaatcagatg aacccatttt caaaaaagcg tatgatgttc      2460
     cctaccgctt aaaagataaa gttataaact atttggaacg gttggaaaag gaaaaagtaa      2520
     ttactcctat tgaaactagc ctatgggcat ctccggtgat tattgtcatt aaaaagaaca      2580
     acgaaataag attggtcatt gattgcaaag tgtccattaa taaggttatt atccctaata      2640
     cttacccttt gccagttgct caagaccttt tcgctggttt agcgggatgc aaagtattct      2700
     gtgctctaga tttggagggc gcttacaccc agctagagtt aacagaaaag tcaaagcgtt      2760
     tcatggtcat taatacaatt aaagggcttt atacttataa tagactgcct caaggagcaa      2820
     catcgagtgc atctatattc caacaaatta tggacaaagt tttggagggc attgaatacg      2880
     tgtatgttta tctcgatgac gttcttatag ctggtagaaa tttaaatgaa tgcaaagatc      2940
     gattattgat ggtactgaat atattagcaa atgcaaatat aaaaattaac tgggaaaagt      3000
     gcaaattttt cgtttcacaa ttaccctatt tggggcacat cataagcgaa aaaggtttgt      3060
     taccgtgtga ggagaaaatt tctaccattc aaaaggcaaa agtgccgaga aacgttacgg      3120
     aattaaaatc gtttttgggt ttaataaact attacaacaa attcattccg cacttgtcgt      3180
     caaagctcta ccttttgtat aaacttctaa agaatgatgt gaaatttatt tgggatgaaa      3240
     attgcgaaaa agcatttgaa gaagcaaaaa ctgcattatt gaatacacaa tttctagagt      3300
     tttacgatcc taaaaaggca ataattgttg tggccgatgc atcaggatat ggccttggag      3360
     gagttattgc acatgtggtc cagggcatag aaaagcccat atgttttaca tcttttacgt      3420
     tgaatgacgc acaaaaatcg tatcctattc tccatcttga agctttagct cttgtttgca      3480
     ccataaagaa atttcataaa tatttatatg gccagcactt tactgtttat acggaccata      3540
     agcccttagt gggaattttc ggtaaatctg gaaaacactc aatatttgtt actaggattc      3600
     aaagatacat acttgaattg tcaatttatg attatgatat tgtatacagg ccatcggcta      3660
     aaatgggaaa tgcagatttt tgctccagat ttcctttaga acagagtgtt ccggcagaat      3720
     atgacaccga tgttgtgaga agcattaatt ttggtaagga actacctatg gatcataaga      3780
     aaatagcaga gttgacaaag gttgataagt atctgcaaaa tataatttac tatttgaaaa      3840
     atggctggcc aaagagatta gaaaaacagt tcatagatgt tcattcaaat caacaagagc      3900
     tagaaattgt tgatgagtgt ctattgtatc aggatagggt aatagtacca caacaaatgc      3960
     acagtgaaat tttgaaactg ttgcatgcaa atcattctgg aactgtcaag atgaagcagc      4020
     tggcaagacg tacagtatat tggtatggaa tcaacaaaga catagaaaat ttagtaagta      4080
     aatgtgatgc ttgtaatggt atggcagcaa atatgaaacc taaagctaca tttcaatgga      4140
     cccctacctt aagaccgttc agtagaatcc atcttgattt tttttacttt cagcatgaaa      4200
     cgttcttgtt gatagttgac agcttttcca aatggctaga agtggaaaag atgaacaaag      4260
     gcacggatgc tggaagagtc ttgaaagttt tagttgaatt ttttgcgcgg tacggtttgc      4320
     cagatgtttt ggtatcggac aatggtcccc cattcaattc tattaatttt gtacaatttc      4380
     tagaaaggca gggaatagtg gtgttgaaaa gtcctccata caaccctgct agcaacgggc      4440
     aagctgaaag actggtcaga acagttaaag acgttttaaa aaaattccta ttggataagg      4500
     attatttaga tatggatctg ggggatcaga taaatttatt tttgttcaat tatagaaaca      4560
     attgcttgac ggaggatgga cgttttccat cagaaaatat tttctcgttt gtacctaaac      4620
     aacttattga cctaattaat cctaagaaac attacaagcg acaaatgtcc caaccacacg      4680
     ctataactaa tgataactgt ctaatttcta attttaatgc tgatttggca aacgatccca      4740
     ttaacaatct aatggaggga gaggaagtat ggtgcaagaa tcataacccc catgttccag      4800
     caagatggat caaaggacat tttgttaaaa gattctctaa aaatacattc cagattatga      4860
     ttggaagcgt gccaactacg ctacatcgaa accaacttag attaccgaaa cgttcggaat      4920
     ctcctatccg gccaatgata actacgtcga tcgaaaggac acgaagccca atgaatcatc      4980
     gagatggcag ttcggggggt gccaggagaa gtcctgcagc cgctgagcag ccgagaagaa      5040
     aacgtaaaag tgtgttatct tccgaaatag tatcgacgga acctcggaga tccaaaagag      5100
     tgcggaagga aaattttgac aaagactatg tttataactg aatttgttac atgtatttta      5160
     gaacaaatgt tctttcgaag ttaattgaat caaaaattca gtcgaattat attgaatggt      5220
     acactcaaac atcgaattct gaattggtga ttattatata agaagaagaa gctaagattt      5280
     cattttaagt gtattttagt tcttaaggag gaagagc                               5317
//
ID   Gypsy-314_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-314_;
KW   Gypsy-314_AA-I; Gypsy-314_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-202
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-202
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 395-395 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 202 BP; 69 A; 44 C; 34 G; 55 T; 0 other;
     tgtggtatcc ctgtccaatg acagagatgg cgaacaaagg ttcgatctca ctcaaatcac        60
     atgtaatgcg tgtaacgcca tcaaacgatt taaaactgaa aataaacacg tagatgaagt       120
     ctttctacgt tcagatagct aactataaac atcttgaaac actcagtatt attctccgaa       180
     agtctggttc ccgatcatta ca                                                202
//
ID   Gypsy-315_AA-I repbase;    DNA;    INV; 5337 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-315_;
KW   Gypsy-315_AA-I; Gypsy-315_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5337
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5337
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5337 BP; 1700 A; 909 C; 1157 G; 1571 T; 0 other;
     gtggctacga gaaaaagaaa gtgatcgtga aaagtgtaaa aatcggccat tactctcgat        60
     gcacctccaa tcagcctgat agcagatccg atttacgaca atcgcgtgca gctaccgttt       120
     tccagaacag cactgcagta ggcacaccaa cgacggggac gctttcgttc cagatttcgc       180
     ttgctgctag gttgaagttc cagtgcgctt ttggtttgat ttggtaggat ttttcatcgt       240
     aagtagaatc cttcctgggg taagtggagc gattcccagt tttccaacgt ggttagtcat       300
     tttgattgat aacgtgtggt atttttccac agtaccattg gtgagacagt gaaaaggcct       360
     tttcttctat tgaagcatta ttaagcaaac aatagggtgg accaaataca caattaattg       420
     ttgactataa aacatttttc ttttcaattg tttttgtttc aaattaataa aagaatttta       480
     ttttttacaa cagcatcctt attgtggttg agacaatcgt gcagtgattt taccacaatt       540
     cttctggagc gttcctctgg ttcatgcggc gtgaaggagt ccgttcaaat ttcggctaat       600
     tcggtcggct gtgcccttca caggtgcggc tgtggaacgt gacctgtatc ggtatcactt       660
     caccagggct agtggacagc tgcgttttca aaccggagtt ttgtggcgat aacggttacg       720
     acaaaagtcg ttgctgagaa gtacaaaaag gaccttgtcg gtaagtcagg catttttttt       780
     attttttgtt aaacgactaa gcacaatagt ttcccccatt atcaacaatt gaccattgat       840
     ttgatacaat ctgttctttt tttttcattg tttttctttt ttttaacttg ttttttctat       900
     tttgctgcaa actaaaattg caaatttttg gtaaaataac tattttttat tcagtgtgtt       960
     aaaatgagta cgaatattgg ttgcacaatg gaacagtttc gtaagggtac cagtttcagt      1020
     gactggtatg ctcgtttgaa attctttttt aaagtgaaca agataaagga tgaagaaaaa      1080
     atggcattct ttatcacatt aggtgggccg attctttttg atgaaattaa attactctat      1140
     ccggcgggtg attatgaaga aacagctttc gatgatttaa tttcgaagct gaagaaccgt      1200
     ttggacaaaa ttgagccgga cttagtccaa cggtataaat ttagcatccg aaaacaaaat      1260
     cctgatgaaa ccacggagga ctttgtctta gctttaaaac ttcaggcaga attctgtggt      1320
     ttttccaact acaaagaaac cgccattatt gatcgcctta ttgcgggaat aaaggataag      1380
     cagctaaggc agcgactcct tggggaagaa aaacgtacct tagcaaatgc agagaagctc      1440
     atcgcaacct gggaggtggc aagagcaaat gcaggtgctg cagatgagag aagcaaagtg      1500
     gatcctgatc agattgcctt agttcatgat ggtccagccg gacgatttgg agtgacctac      1560
     agaaagctga aacagacttt ggatttggcc agcaaatacc agagggacga ccggactaga      1620
     ggagccgaaa gcagcagggg tccggtgaaa agtcgcctgg gcgtacgacc ctacgagtat      1680
     ggacaacaaa gtcgggggca acggcattat ggctcgagga cagcaaactt tcgcctggac      1740
     ggagctggct tggcaaggac taggccagat tattcggatg tcatctgcaa cttttgtgga      1800
     atgaaaggcc atataaagaa acgttgtttt aaacttaaga acctccagag ggattcggtc      1860
     aacctcgtgg attccttcca accagagtca actgcggatc gccatatagc cgagctgatg      1920
     gaaaggatgc gaacgaatga ttcggatggc gaggacagcg attcaggtga tttggaatgc      1980
     atgctaattt cgtcaattaa taagattagt gacccttgtt tagtttttgt ggaaattgaa      2040
     gggaattctt tggaaatgga agttgattgt ggtgcgtcgg tctctgtgat tagtaagaac      2100
     cgatattttt ccaaatttac caagcccttg cagatatatg gcaagaagtt gatagtggtc      2160
     aatggatcaa ggcttaaagt tgagggggag gcaaaggtct gggtgagatt caatggaaag      2220
     cagcaaatga tgcaattatt agtactagat tgtgataatg acttttatcc tttgtttggc      2280
     cgaacttggc tagatatgtt ttaccccaac tggaggattt tttttgcaaa tacaatgacc      2340
     atcaataatt tgacaaatgt acccagcgac acgtctgtag atgaaatcaa aacgaaattc      2400
     catcacgttt ttgagaaaga tttgtcggct ccaattaagg attttaaagc acaattagta      2460
     ttgaaggacg agtctccgat ttttaaaaaa gcctacgatg ttccatatag gctgaaagat      2520
     aaagttaaag aatatttgga caaattagaa aaggaaaaag tcattacacc tattaagact      2580
     agtgaatggg catctccgat aataattgtc atgaaaaaga ataacgatat tcgtttggtg      2640
     attgattgta aagtatctat caataaatca attataccta atacttaccc actaccttca      2700
     gtacaagata tttttgcaaa tttagccggc tgtaaagttt tctgtgctct tgatttagag      2760
     ggagcgtaca cccaactcga attaacagac agatcaaaac gttttgtggt tatcaacact      2820
     atgaagggat tgtacactta taacagactt ccacaaggcg cttcttcaag tgcttctatt      2880
     tttcagcagg taatggataa gattttggag ggtattgaat atgtgtcatg ctatctggac      2940
     gatgtattga ttgtcgggag aaatgcagag gattgcaaaa aaaacctgtt tctagttttg      3000
     gaaagattag ccaatgctaa cattaaagtt aattttgtga aatgcagatt ttttgttaca      3060
     aaacttactc atttaggtca cattattagt gagaaagggt taatgccttg cactgataaa      3120
     atgtctacca ttgaaaaagc aaaggctcct aagaatgagt ctgagttaaa atcctttttg      3180
     ggttttttaa attactatca taaattcata ccgcatttat cctctaaact gtatcatttg      3240
     tataatttgt taaagaacaa tgtaaaatac atttgggatg acaactgtca aaaagcgttc      3300
     gaggaaagca aacatctttt gatgaatgct aattttttag aattttacga tccaaaaaaa      3360
     ccgattgtga taatttcaga cgcttctagt tatggccttg gtggcttaat agcccatgaa      3420
     gtagatgacg aagaaagacc cattagtttc acctcgtttt cattgaatga agcacagaag      3480
     aagtatccaa ttttacattt ggaagcttta gctttggttt gcacgataaa aaaatttcat      3540
     aagtatctat atggtctgca ttttacagtt tacactgatc ataaaccgct agtgggaatt      3600
     ttcggaaaat ctggtaataa ttcaattttt gtgacaagac tccaaagatt tatcttggac      3660
     ttatcgatat atgacttcga aataatttac agaccatcac ataaactggg aaatgcggat      3720
     ttttgttcac ggttcccttt gacgcaggaa gttcctgaag gcctggactc tgaagtaatt      3780
     aagagcatta attttagcaa agacattcca ttagactaca aaatgattgc tgaaggcact      3840
     aaagacgacg aatttttgca agaaatcaaa ggatttatgc acaatggttg gccagaaaga      3900
     gtaaataaac gatttagtga agtttttgca aaccagcagg atttagagtc tgttgacgat      3960
     tgtttgcttt acaatgacag ggtaattata cctaaaattt accaaaaaca aattttgaag      4020
     ttactccata gtaatcatgc aggagtagta aagatgaaac agctagctag aagcatggtt      4080
     tattggtttg gtataaatgc cgacatagag aaatttgtga attcgtgcga agcatgtggt      4140
     agtatggcta ttcctcgcca accaaagaca gaatctgaat ggataccaac gaccagaccg      4200
     tttagtcgag tacatattga ttttttttac tttgagcatc gtacatactt gctaatcgta      4260
     gatagttact ccaaatggat tgaaatcgag ttaatgcaac agggtactga ttgcaataag      4320
     gttttgaaaa agctagtaga attttttgcc cgttttggat taccagatgt cttagtctcg      4380
     gacaacggtc ctccttttaa ttcccatgat ttcaaaattt ttctagaaag gcaaggtata      4440
     aaagttatga aaagtccacc ttaccatcct tcaagcaacg gacaagcaga gagattagta      4500
     aggacagtaa aagaagtcct caagaggttc ttattggaac ctgaaatcat gaggatagac      4560
     cttgaagacc aaataaatct tttcttgagt agttatagaa acaacaatat gacaagggat      4620
     ggacattttc catcagaaag gatatttttc tatgcaccaa aaactatttt acatttgatt      4680
     aacccgaaga agcagtataa gcatcagcta gcagtatcac aaccaaatga ggaaattatc      4740
     acagagcatt cgaccggggc gatcccgaag cattcacatg atgcaattga taatctgatg      4800
     gtaggggatg atctgtggta caaaaatcac agccctcacc accactcaag atggataaag      4860
     gctaccttta taaaaaagta ttctctcaac acattccaga ttcgaattgg aaacgtagag      4920
     gccatggtac acagagatca aatcaggatt cgtaaggacg atgcatcaga gcgaaagccg      4980
     aacgttttca tcacgcagag tggcccagac gaagcaatta gcgagaagat tgtggatcgg      5040
     aacgaagggc aggagagtcg cgaaggcgaa gtgacggacc ttacaagcaa aagcgtccga      5100
     aacagaaaac ggaagtgcgt gattacggaa ccagaattag gagaacctag gcgatctaag      5160
     cgaactaaaa agcctaacag agttgatgaa tactgctacg attagaatta gttatgttgg      5220
     atctgttaaa atgaattcag ttgtgaattt cgaggttttt atgatttttt attatatctc      5280
     aaagtttaag ttacaaaagt tgacaaaggt cagttctgat tttaaaaggg gtagtat         5337
//
ID   Gypsy-315_AA-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   11-DEC-2018 (Rel. 24.03, Created)
DT   11-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-315_;
KW   Gypsy-315_AA-I; Gypsy-315_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-203
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-203
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 396-396 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 203 BP; 59 A; 42 C; 43 G; 59 T; 0 other;
     tgttatacct tcgcgcaccc tgcgcattcg aaatcggttc tgtgaacaga tgtcaaagtt        60
     cgtcagcctt cgggcgatgt cgtgtataca tgttggttac ctggaaagaa gaaatgagaa       120
     atacagttag acagttttga gacttgaaac caaacggact tgttttcatt acatcggact       180
     attccctacg caaatacttt aaa                                               203
//
ID   Gypsy-316_AA-I repbase;    DNA;    INV; 5380 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-316_;
KW   Gypsy-316_AA-I; Gypsy-316_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5380
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5380
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 441-441 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1016..5242
FT                 /product="Gypsy-316_AA-I_1p"
FT                 /translation="MSSTMAFSMEPYRRGTSFNDWYTRMKYFFRVNDVKEE
FT                 DKLAYFITISGPVIFAEIKLLYPAGNFEEASLDDIVSKLKSRLDKTDPDMV
FT                 QRYKFATRVQNPDESTEDFILNLKLQAEFCGFENYKQVAILDRVVAGIRDK
FT                 NLRQRLLSEEKLTLANAEKLIATWEVARANAGTAEQQNGGHSSLVAALYSS
FT                 PSQRVGATASRLAQVYRLARDDEAEGTSSRGPVKSRLGFRPTERWQQPYRG
FT                 GRRADGSNTQAREGRQGHRQWQRPDYSQMICNFCGIKGHIRKKCFKLKNLH
FT                 RDAVNLVDSYRPGPSADRHISELLERMNTQDDDDVEESESGNLQCMLVASI
FT                 NKISNPCLVRVEIEGKGLEMEVDCGASVSVISKRRYLSKFDNPLRNYSEPL
FT                 MVVNGSKLKIEGEATVSVKVNGKEALMQLLVLDCENDFYPLLGRTWLDAFY
FT                 PNWRHFFTSSLQVNKVNEGSGEITVDELKHKFENVFKKNFSSPIIGFKADL
FT                 VMKDTDPIFKKAYDVPYRLKEKVSSYLDKLEREKVITPIDTSVWASPIIIV
FT                 IKKNGEIRLVIDCKVSINKAIVPNTYPLPTSQDIFANLAGCKVFCALDLEG
FT                 AYTQLELTDRSKNFVVINTMKGLYRYNRLPQGASSSASIFQQVMDKVLEGI
FT                 ENVSCYLDDVLIAGKTAEDCKNKLLLVLQRLANANIKVNFEKCKFFVTELT
FT                 HLGHIISDKGLMPCPDKISTIEKAKAPKNESELKSFLGLLNYYHKFIPNLS
FT                 AKLYPLYNLLKNNVKYTWDDDCQKAFMESKNYLTETNFLEFFDPXKPMVVI
FT                 SDASSYGLGGLIAHVIDGEEKPISFTSFSLNPAQRKYPILHLEALALVCTV
FT                 KKFHKYLYGQHFTIYTDHKPLVGIFGKEGRNSIYVTRLQRFVLDVSIYDFD
FT                 IIYRPSHKLGNADFCSRFPLDQDVPEQXDIDAIKSINFSKEIPIDSKLIAE
FT                 ATKEDEFLQKVISFMLNGWPDRVDRHFHDVFSNYLDLELVDDCLLFRDRVI
FT                 IPKVYQNKVLVLLHANHFGIIKMKQLARNSVYWFSINKDIENYVANCDACS
FT                 SMAIVHKSKDSSIWTPTTRPFSRIHIDFFFFEHRTFLLIVDSFSKWIEVEW
FT                 MKQGTDHAKVLKKXVAYFARFGLPDVLVSDNGPPFNSWNFVDFLERQGIKV
FT                 MKSPPYNPSSNGQAERLVRTVKEVLKRFLMDPKMMELDLEDQINLFLFNFR
FT                 NNNLTKDGTFPSERIFSYKPKTILDLVNPRNHYKKHFYKPQPDDEVQIEHQ
FT                 GGRIPKVSEDAIDKLIAGDEVWYKNHNPHNPARWIKATFIKKHSHNIFQIS
FT                 IGNVVAMAHRTQIRICKADTTWQGPNVLVTKQKQNGRHDDSMILPDVEPPP
FT                 MGDDPQIQAPKGGRKRKQPIPVDDIVELRRSKRSKKSNRRDEYQYN"
XX
SQ   Sequence 5380 BP; 1737 A; 934 C; 1118 G; 1587 T; 4 other;
     gtgtcgacga gtaaatagct ttcgcgtgca aagtgaggaa gaaaatacac atttttacca        60
     ccaaagtgct tcatttcgcc gtgggacggg caccggttac cggataaacg attcagcagc       120
     ctcgtttagc agccagagaa ggaccaagcc gtcgcaaagg ttcggaagct cacggtggag       180
     tttttcgggt ggcttccgat agatttctcg gttgggtcaa cgaaagggtt ttcgacgctg       240
     tgaaatcgta agtaaggtga caaaattgca ggaaaatcat aaaagtgtga aaatattaca       300
     ttgattccac cattttgtgt aatagcgtta ctccggacac aattgccggt gaaaatcgaa       360
     aaggcctttt cgtttctgta tgcggtcgag tataataggg tggtccataa aataaccatt       420
     ttttttttca gctgcgtttt acttttacgc catttcgtta tttcgataga caattaatag       480
     aagttttctt ttcttcaaat ctagtagaaa cagttgaaag acgattgtcc tcggttaatt       540
     caaaggaatt caggcatccg gtctaccttg ttcgacgagc gctcaggttg agttgcagag       600
     gtgaagcaaa ggttgtgcta gataagaaca taatagggtg agtaattttt gccgtttttt       660
     gtaacatttt gaagaacaat tccaattttc caaacgacta agtttatttt tataacttta       720
     tttcccttcg tcacgttttt tatattaatt tgttgtatta ctgccgattt atcaaccatt       780
     ttcaattatt ggggcgtact attgtaccgg gttgttcttt caaacattaa tactgttcct       840
     ttttacaaat ttgttcattt actgaatacc ttttgtcaat tattgaaaac cttttgttaa       900
     ctactgaata ccttttgtca tttactacct tttgtcaatt actgaatact tgaattattc       960
     aattatttca tatcgtttgt tcctgaatac ctttggttaa ttggcaatta gtacaatgag      1020
     ttccaccatg gccttttcta tggagcctta ccggcgtggt acatcgttta acgattggta      1080
     cacccgcatg aaatattttt tccgtgtaaa tgatgtaaag gaggaggaca aattggcata      1140
     ctttattaca attagtggtc cggtaatttt tgccgagata aaacttcttt atcctgcggg      1200
     aaattttgag gaagcgtcac tggacgatat tgtttcaaag cttaaaagtc gcttggacaa      1260
     aacagatccc gatatggtac aaaggtacaa atttgctacc agggtccaaa atccggacga      1320
     aagtacggag gatttcattt tgaatctgaa attgcaagcc gaattttgcg gttttgaaaa      1380
     ctataaacag gttgctatcc tagaccgcgt tgtagccggc atcagggata aaaaccttag      1440
     acaacgactt ttgagtgagg aaaagttgac tctggccaat gccgaaaaac ttatagctac      1500
     ttgggaagta gctcgagcta atgccggtac agctgaacaa caaaatgggg ggcactctag      1560
     tttggtagca gcactataca gcagtccaag ccaaagggta ggagcaacgg cgtcaagatt      1620
     ggcccaagtc tatcgactgg caagagatga tgaggcagaa ggtactagca gtagagggcc      1680
     cgttaaaagt cgtttaggtt ttagaccgac ggagagatgg cagcaaccat accgaggggg      1740
     acgtagagca gatggaagta atacccaagc acgggaggga cgacaggggc atcggcaatg      1800
     gcagcgaccc gactattccc aaatgatctg caatttttgc ggaattaaag gccatattcg      1860
     gaagaagtgc ttcaagctga agaatttaca ccgtgacgca gtgaatctag ttgattcata      1920
     tagaccaggg ccatcggcgg acaggcacat ctccgaattg ctggaaagaa tgaacaccca      1980
     ggacgacgat gatgtcgaag aatctgagtc aggtaatcta caatgcatgt tagtagcatc      2040
     tattaacaag ataagcaatc cttgcttagt aagggtggag attgaaggca aaggtctaga      2100
     aatggaagtt gattgtggag catctgtatc agttataagt aaaaggcgat atttgtcgaa      2160
     gtttgataat cctctgcgaa attatagcga accactgatg gtcgtaaatg gatcaaaatt      2220
     aaaaatcgaa ggggaggcaa cagtttctgt aaaagttaat ggaaaagaag cgctaatgca      2280
     gctactagta cttgattgcg aaaatgattt ttacccactt ttaggtcgaa catggcttga      2340
     tgcgttctat ccaaattgga gacatttctt cacaagttct ttacaagtta acaaggttaa      2400
     tgagggatcc ggtgaaataa ctgtagatga attaaaacac aaatttgaaa atgtatttaa      2460
     aaaaaatttt tcgtcgccta ttattggttt caaagcggat ttagtaatga aagatacaga      2520
     ccctatattt aagaaggcct atgatgttcc ttatagattg aaggaaaaag tttcctcata      2580
     tttagataaa cttgaaaggg agaaagtcat cacacctatt gataccagtg tatgggcttc      2640
     tccaatcatt atagtaataa aaaagaatgg tgaaatacgg ttagttattg actgcaaggt      2700
     gtccatcaac aaagccattg ttccaaatac ttaccctttg ccaacatcac aagatatttt      2760
     tgcaaattta gctggatgta aagtgttttg cgcacttgac cttgaaggtg cctacacaca      2820
     attggaacta accgacaggt ccaaaaattt tgtagtcatc aacacgatga aaggattata      2880
     cagatacaat agattaccac aaggagcatc ctcaagtgcc tctatttttc aacaggttat      2940
     ggataaagtg ctggaaggga ttgaaaacgt ttcttgctac ctagatgacg ttttgattgc      3000
     cggaaaaacc gctgaggatt gtaaaaacaa acttttatta gtgttgcaac gattggctaa      3060
     tgctaacata aaagttaatt tcgaaaagtg caaatttttt gttacagagc ttacacattt      3120
     ggggcacatt attagcgaca aaggactgat gccatgtccg gacaaaatat caacaataga      3180
     aaaggcaaag gcccctaaga atgagtcgga attgaaatcc tttttaggtt tattaaacta      3240
     ttatcacaaa tttattccta acctgtcagc taaattgtac cctttatata atttattgaa      3300
     gaacaatgtc aagtacactt gggatgacga ctgtcaaaaa gcttttatgg aaagcaaaaa      3360
     ttatctaact gaaacaaact ttttagaatt ttttgatccc wgtaagccaa tggtagttat      3420
     ctcagacgct tcaagttatg gtcttggagg tttaatagca catgtgatag atggagaaga      3480
     aaaaccaatt agttttacat ccttttcctt gaatccagct caaagaaaat atcctatttt      3540
     acatttggag gctttggctt tggtttgcac tgtaaaaaaa tttcataagt acctttatgg      3600
     acaacatttc actatttaca cggatcacaa gccattggtg ggaattttcg gtaaagaagg      3660
     aagaaattca atttatgtga caagactaca acgctttgtt ttagatgtga gcatatacga      3720
     ttttgacatt atctacagac cttcgcataa attagggaat gcagatttct gttccagatt      3780
     tccattagat caagacgtac ctgagcaatt kgatatagac gctataaaaa gtattaactt      3840
     tagtaaggaa atacctattg attcaaaatt gattgctgaa gcaactaaag aagatgaatt      3900
     tctgcagaaa gttatatctt tcatgcttaa tggttggcct gacagagtag acagacattt      3960
     tcatgatgta ttttcaaatt atttagattt agaacttgtg gacgattgtc ttcttttccg      4020
     agacagagta atcataccta aagtttacca aaataaggtt ttagtattgc tgcatgcaaa      4080
     ccattttgga attattaaaa tgaagcaatt agcacgaaat tcggtgtatt ggtttagcat      4140
     caataaagac atcgaaaatt atgtagctaa ctgtgatgca tgtagtagta tggcaatagt      4200
     tcataaatcc aaagactcat ccatctggac accaactacg agacctttca gtagaataca      4260
     cattgatttt ttcttcttcg aacaccgcac ctttttgcta atagttgaca gcttctccaa      4320
     atggatagaa gtagaatgga tgaaacaagg aacagatcat gctaaagttt taaaaaaawt      4380
     ggtggcttat tttgctcgtt ttggtttgcc tgacgtttta gtttcggaca atggtcctcc      4440
     ctttaattcc tggaattttg tggacttctt agagaggcaa gggataaagg ttatgaaaag      4500
     cccaccatat aatccctcaa gtaacggtca agctgagagg ctggtgagaa ctgtaaaaga      4560
     agtcctcaag aggttcctaa tggaccccaa aatgatggaa ttggatctgg aagaccagat      4620
     aaacttattt ctgtttaatt ttagaaataa taatctaacg aaagatggaa catttccatc      4680
     tgaaagaata ttttcttata aaccaaaaac tattttagat cttgtcaatc caagaaatca      4740
     ttacaaaaaa catttttaca aaccacaacc cgatgatgaa gttcagattg agcatcaagg      4800
     cggaagaatt ccgaaagttt cagaagatgc tattgataaa ctgattgctg gggatgaagt      4860
     gtggtataaa aaccataatc cccacaatcc agcaagatgg attaaagcca cgttcattaa      4920
     aaagcattct cataatattt ttcagatttc cattggaaac gtggtcgcaa tggcccatcg      4980
     aacgcagata aggatctgta aggcggatac aacctggcaa gggccgaacg ttttggtaac      5040
     caagcagaag caaaacggca gacacgacga tagcatgatt cttcccgacg tagagccgcc      5100
     gcctatgggc gatgatccac agatacaggc tccgaaggga ggtcgaaagc ggaagcaacc      5160
     gattcctgtt gacgatatag ttgagctccg tagatcaaag cgttcgaaga aaagtaatcg      5220
     tagagatgaa tatcaataca actagcataa tttaaagttt tcggattaat ttcagatcaa      5280
     ttaccattga attcgattct tgtctwatac atagtttatt gtattttctg atcataattt      5340
     cacattctga atagttgtaa cttcgtgaag ggggaagaat                            5380
//
ID   Gypsy-316_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-316_;
KW   Gypsy-316_AA-I; Gypsy-316_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 397-397 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 68 A; 50 C; 42 G; 54 T; 0 other;
     tgatatgttc gttatgagca tccctaacga tgtgtcattt gacgttcgtc tatcggacga        60
     acgagcgcga gagccgaagg gctcgaacaa gagaaaaaaa ataaatcaga cttcagtctg       120
     ttctgatact ccacttgaag cagaagttct tttaaaaacc ctctcatcac gtccgatcat       180
     caatccctct gtccggtacg gaaaacatat aaaa                                   214
//
ID   Gypsy-317_AA-I repbase;    DNA;    INV; 5281 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-317_;
KW   Gypsy-317_AA-I; Gypsy-317_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5281
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5281
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 442-442 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           917..5152
FT                 /product="Gypsy-317_AA-I_1p"
FT                 /translation="MSSSMAFSLEPYRRGTSFNDWFTRLKYFFRVNKIKED
FT                 DKMAYFITMSGPVIFTEIKLLFPAGNFEEEALDDIVSKLKNRLDKTDPDLV
FT                 QRYKFSTRVQNPDESTEDFVLNLKLQAEFCGFENFKQVAILDRLIAGIRDK
FT                 NLRQRLLSEDKLTLTNAEKIIATWEVARANADTTDQSSIGHPGMIAAVSDR
FT                 SYQGVAARRLSQIYDYSKKYQNLDNNGEGSSGRGPVKSRLGFRPSERWQQT
FT                 NKGRREMDTGNFRIQTGRYGGQRQWQRPDYSQMICNFCGVKGHIKKKCFKL
FT                 KNLNRDAVNLVESYRPGPSADRHIVELLERMHTRDDDEVEDSDSGNLQCMF
FT                 VSSINKISNPCLVQVEIEGKYLEMEVDCGASVSVISKRRFMSKFDNPLRNY
FT                 SEPLMVVNGSKLKIEGEAMVSVKFNGKEALMQFLVLDCENDFYPLFGRTWL
FT                 DTFYPNWRQFFKTAVTINSVNEMPGEITVDELKKRFKNVFTKNFSSPINGF
FT                 KAEIVMKDDTPIFKKAYDVPYRLKDKVSVYLDKLEREKVITPIDTSEWASP
FT                 IIIVMKKNNEIRLVIDCKVSLNKMIVPNTYPLPTSQDIFANLADCKVFCAL
FT                 DLEGAYTQLELTERSKKFVIINTMKGLYKYNRLPQGASSSASIFQQVMDKV
FT                 LEDIENVSCYLDDVLIAGKTAEDCKQKLLLVLERLSKANIKVNFEKCKFFV
FT                 TELTHLGHIISDKGLSPCPDKISTIEKANAPKNESELKSFLGLLNYYHKFI
FT                 PNLSSKLYPLYNLLKNDVRYVWDENCQKAFVESKNLLIKTNFLEFYDPRKP
FT                 VVVISDASSYGLGGLIAHIVDEQEKPISFTSFSLNAAQRKYPILHLEALAL
FT                 VCTIKKFHKYLYGQHFTVYTDHKPLVGIFGKEGRNSIYVTRLQRFVLDLAI
FT                 YDFDIIYRPAHKLANADFCSRFPLQQDVPDFLETDAIKSINFSKEIPIDYK
FT                 LIANATKADEFLQKVITFMLNGWPERVDRQFHDVFSNYLDLELVDDCLLFR
FT                 DRVIIPKVHQEQILKLLHANHSGIIKMKQLARNMVYWFGINTDIEKFVANC
FT                 DACCSMAVVQKSTDSSKWTPTARPFSRIHIDFFFFEHRTFLLLVDSFSKWI
FT                 EVEWMKNGTDCKKVLKKLVAYFARFGLPDVLVSDNGPPFNSWNFVDFLERQ
FT                 GIRVMKSPPYNPSSNGQAERLVRTVKEVLKKFLMDSEMSGLDLEDQINLFL
FT                 FNFRNNNLTKEGHFPSERIFSYKPKTILDLINPRNNYKKQMIVPRPDDEVH
FT                 VEHQSGGIPKTTVNAVDNLKAGDEVWYRNHNSHNQARWIKATFIKKYSHNV
FT                 FQICIGNVDAMAHRTQIRVCKKSTTWQRPNIMIMREQPSDIIQDDQMITPG
FT                 DGPLNGEEEIQAPKGSRKRRLQESDSNQVELRRSKRPRKVNRSADYHYN"
XX
SQ   Sequence 5281 BP; 1727 A; 842 C; 1123 G; 1589 T; 0 other;
     gtgtcgacga gtaaaaagaa attagttttc gcgtgcgtgt ggtgatttat tccgatattg        60
     gaattgggac ggccatcctc cacgtttgca gcggaaaata gttgggattt gctggaaaac       120
     tttaaggata gaggtaattt tcatacacca tttggtgaag gccattacca gccagcggcg       180
     taagttggcc agcgtagaaa accgtaagta cggcaagtaa agtgtgttga aatctgaact       240
     acataaagaa agaggttcct gtaagtgatt tcgccattgt ggggtgcgct ttactggcaa       300
     gtaattgaaa aggccttttc atctttgcaa gtgaccgaat acaatagggt ggaccatttt       360
     tttttctttt gctctaacaa agcttttgtg gcataaaagc gaacatttca tttcatcgtt       420
     tggagttatt gcaaataaaa atattctttt catttgtata aaggtttagt cgccgcacag       480
     ttcgacaatc ttaagaacga aacccatcca aggaaaattc ctcaacgcaa gttcaaggga       540
     actggaccat tggcggctta aagagtagct gaatttagtg aaattctgga ccgtaatttg       600
     cgtagcgaag attccgactg gttatcagca gagtagggta agtcctttat ctttcttcca       660
     tttattcgat tgtttaaaaa gtgaaaagac cattttgttg tagtttatac aatagcctaa       720
     taagtttttg tttttcatat ttttcatttt tttttctatt ttttacgatc attgtttctg       780
     cttttatctg ccttgattta tcaatttacg ctattgtact aaaatttgaa ttggtttgat       840
     tgtttttgtt caatttgaat tgatccattg tgcctattga atcttttgga taaattttgt       900
     ttctattatt tagataatga gctccagtat ggcgttttct ttggaaccat accgcagggg       960
     aacctcattc aatgactggt ttacccgttt gaaatatttc ttccgggtga acaagattaa      1020
     ggaagacgat aagatggctt actttatcac tatgagtggc ccggtgatat ttaccgagat      1080
     taagcttttg ttccctgctg gaaatttcga agaggaagcc ttagatgaca ttgtatccaa      1140
     gcttaaaaat cgtctggata aaacggaccc agacttagtt caaaggtaca aatttagtac      1200
     acgagtacaa aaccccgacg aaagtacgga ggactttgtt ttaaatttaa aactacaagc      1260
     agagttttgt ggatttgaaa attttaagca ggtcgctatc ttggatcgct taattgctgg      1320
     cattagggac aaaaatctta gacaacgtct tctgagtgaa gacaaattaa ctttgacgaa      1380
     cgcagaaaaa ataatagcta catgggaagt agctcgggct aatgcggaca ctactgatca      1440
     atcaagcata gggcatccag gtatgatagc ggcagtgagc gatagaagtt atcaaggtgt      1500
     agctgcaaga agattgtctc aaatttacga ttattcaaag aaataccaaa atttggacaa      1560
     caacggcgaa ggaagcagtg gtagaggacc agtaaaaagt agattagggt tcaggccgtc      1620
     agagagatgg caacaaacaa ataaaggtag acgagaaatg gacacaggga acttccggat      1680
     tcaaacagga cgatatggtg gacagcggca atggcagcga ccggactact cccaaatgat      1740
     atgcaatttt tgcggagtaa aaggccatat taaaaagaag tgctttaagt tgaaaaattt      1800
     gaatcgtgat gcggtaaatc tcgttgaatc atataggcca ggaccatcag cagaccgcca      1860
     catcgtcgaa ttactagaga gaatgcatac cagggatgat gatgaggtcg aggacagtga      1920
     ttcaggtaat ctacagtgta tgtttgtgtc ttctataaac aaaattagta atccttgctt      1980
     ggtgcaagtg gagattgaag gcaaatacct tgaaatggag gttgattgtg gtgcgtcggt      2040
     gtctgttata agtaaaagac gatttatgtc gaaatttgat aatcctttgc gtaattatag      2100
     cgaaccgctg atggttgtga atggatctaa attgaaaatt gagggagaag caatggtttc      2160
     agttaaattc aatggtaaag aagcgcttat gcagtttttg gtacttgatt gcgaaaatga      2220
     tttttatcca ctttttggcc gaacttggct agatacgttt tatcccaact ggagacaatt      2280
     ttttaaaaca gctgtaacaa ttaacagtgt aaatgaaatg ccgggtgaaa ttaccgttga      2340
     tgaactaaag aaaagattta aaaacgtttt tacaaaaaac ttttcatcgc ctatcaatgg      2400
     atttaaagca gaaatcgtaa tgaaggatga tacccccatt tttaaaaaag cttatgacgt      2460
     tccttacaga ttaaaggaca aagtttctgt ttatttagac aagttggaaa gagaaaaagt      2520
     catcaccccg attgatacaa gcgaatgggc atcgccaatt attatagtta tgaagaaaaa      2580
     taatgaaatt cgtttagtaa ttgattgtaa agtgtcatta aacaaaatga tcgtacctaa      2640
     tacttaccct ttaccaacat cgcaggatat ttttgcaaat ttagctgatt gcaaggtttt      2700
     ttgtgcactt gatcttgaag gcgcgtatac tcagttagag ctgacggaaa ggtccaagaa      2760
     atttgttatt attaatacaa tgaaaggctt atacaagtac aacagattac cacaaggtgc      2820
     gtcttcaagt gcttccattt ttcaacaagt tatggataaa gttttggaag acattgaaaa      2880
     cgtttcatgc tatttagacg atgtgttaat agccggaaaa accgctgaag attgcaagca      2940
     aaagctttta ttggttttgg agcgactgtc aaaagctaac ataaaagtta attttgaaaa      3000
     atgcaaattt tttgttacag agctaacgca tttaggacat atcattagtg acaaaggact      3060
     tagtccgtgt ccagataaaa tatcaaccat agaaaaagca aatgctccga aaaatgagtc      3120
     agagttaaaa tcatttctag gtttgttaaa ctactaccac aaatttatac caaacttgtc      3180
     gtctaaattg tacccattgt acaatttgct aaagaatgat gtgcggtatg tttgggatga      3240
     aaattgtcaa aaggcatttg tggagagtaa aaatttgctt attaaaacca actttttaga      3300
     attctacgat ccaaggaaac cagtggtagt gatttcagac gcttcaagtt acggtctcgg      3360
     aggcttaata gctcacatag tagatgagca agaaaaaccg atcagtttta catcattttc      3420
     attgaatgca gcccaaagga aatatcctat tttacatctg gaggcattag ctttagtatg      3480
     tacaataaaa aaatttcaca agtacctcta tggccaacat ttcactgttt atactgatca      3540
     caagcctttg gtgggtatct ttggaaaaga gggtagaaat tctatttatg ttacaagatt      3600
     gcagcgtttt gttttagatt tggcaatata tgactttgat ataatttaca ggcctgcgca      3660
     taaactagca aatgcagatt tttgttcaag atttccctta cagcaggatg ttcctgactt      3720
     tttagaaaca gacgccatca aaagcataaa cttcagtaaa gagataccta tagattataa      3780
     attgatcgca aatgcaacta aagctgatga gtttttgcaa aaggttataa catttatgtt      3840
     aaatggttgg cctgaaagag tagatagaca gtttcatgac gtattttcaa attatttgga      3900
     tttagagttg gtagacgatt gtcttctgtt cagagatagg gtaataatac cgaaggtgca      3960
     tcaagagcaa attttgaaat tgttgcatgc aaatcattca gggataatta aaatgaagca      4020
     gttagcacgg aacatggttt attggtttgg tatcaataca gatattgaaa aatttgtggc      4080
     taattgtgat gcatgctgta gtatggcagt ggttcaaaaa tccacagatt cgtctaaatg      4140
     gacacccact gctaggcctt tcagtaggat tcacattgac tttttctttt tcgaacatcg      4200
     tacttttctg ttgttggtcg acagtttttc caaatggatc gaagttgaat ggatgaaaaa      4260
     tggcacagat tgtaaaaaag ttttaaaaaa attagtggct tattttgctc gattcggttt      4320
     accagacgtt ttggtttcgg acaatggtcc tccttttaac tcctggaatt tcgtggactt      4380
     tctagagcgg caagggataa gggtaatgaa aagcccacct tataaccctt caagcaatgg      4440
     tcaggccgag aggttggtta gaactgtgaa ggaagtcctc aagaagtttc taatggattc      4500
     ggaaatgtct ggacttgatt tagaggatca gataaatctg ttcctattta attttagaaa      4560
     taacaatttg accaaagagg gacatttccc atcggaaaga atattttcat acaaaccaaa      4620
     gactatttta gatttgataa atcctagaaa caattataaa aaacaaatga ttgtaccacg      4680
     tccagatgat gaagtccatg ttgagcatca aagcggaggt attccgaaaa ctacagtaaa      4740
     tgctgtggat aatctgaaag ctggggatga agtgtggtat agaaatcaca attcacacaa      4800
     tcaggcgaga tggattaaag ccaccttcat taaaaagtac tctcacaatg ttttccagat      4860
     atgcattgga aacgtggacg caatggccca caggacgcag atcagagtct gtaaaaagtc      4920
     aacaacctgg caaaggccca acatcatgat catgagagag caaccaagtg acataataca      4980
     agacgaccag atgataaccc ccggcgatgg gccgctcaat ggcgaggaag agatacaggc      5040
     tccgaaggga agcagaaaaa gaagacttca ggagtctgac tcgaatcagg tggagcttcg      5100
     gaggtctaaa cgcccgagaa aagtgaatcg tagtgcagat tatcattata actaattgcg      5160
     tttttcggat ttgcttaagt agaatttgtt ctgaattcaa gattgttttt tgtatagtta      5220
     cttaatgtga gtttattttc actttcgaat tatagtacaa acattataaa aggggaagaa      5280
     t                                                                      5281
//
ID   Gypsy-317_AA-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-317_;
KW   Gypsy-317_AA-I; Gypsy-317_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-256
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-256
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 398-398 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 256 BP; 71 A; 62 C; 46 G; 77 T; 0 other;
     tgttgcatcc tacttgcgca cccctagcgc aatcgaaacg ttatttgacg ttctgcttcg        60
     taagacgaac taatcagtta gccgaagggc tcgaacgaat ctgaaatata tgagacagtt       120
     agtctgatct gaaacctcaa cctgaacagt cgttacttat ccctagatca cggttatctt       180
     catctaagct cctatatttt attcgtttcg cttcttcagt ccacgtcggt acggcccaat       240
     tagtaaagat ataaaa                                                       256
//
ID   Gypsy-318_AA-I repbase;    DNA;    INV; 4968 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-318_;
KW   Gypsy-318_AA-I; Gypsy-318_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4968
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4968
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 443-443 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           716..4882
FT                 /product="Gypsy-318_AA-I_1p"
FT                 /translation="MAQGTLATIMEPYRKGTSFSEWIERLGSVFRLNKIKE
FT                 EDKKDYFATLCGPSVYSEVKLLFPNTNYSDIKFDEMVTKLKSRFDKTESDF
FT                 IQRFKFNHRVQQPDESVEDFVLSVKLQAEFCSFENFKQKAILDRIVAGVRD
FT                 KALQQRLLSEENLTLSNAEKIVITWEMASSNAKSMKDNSDQIGLIRHDRSA
FT                 GIAYKKLEKTLGLARSLNGDNERGPVKDRLGYRPYGRQRQVDWKRDNSRNQ
FT                 QPYEDRVCGFCGLKGHLKRKCFKLKNLKRDTVKFMDTWQAEHGSKGPSDET
FT                 TISGLFNRLRTDKSESEDEEYDAGDLECMMVSSINKINNPCLVNTFVDGKL
FT                 LTMEVDCGASVSVIGKNQYFRTFDKPLSKSNKQLIVVNGNRLSIRGEANVS
FT                 VKFREKLANMQLLVIDCENEFIPLLGRSWLDVFFSNWREFFTSTSTINGLN
FT                 EHHSDITVNEVKQKFANVFKKDFSFPIKDFEADLVLKSEIPIFRKAYDVPY
FT                 RLRDKVLDYLDRLEKEEVITPIKTSEWASPVVIVMKKNNDIRLVIDCKVSV
FT                 NKLIIPNTYPLPTAQDLFAGLAGCKIFCSLDLEGAYTQLSLTERSRKFMVI
FT                 NTIKGLFIYNRLPQGASSSASIFQQVMDQILEGLEYVYCYLDDVLIAGKDF
FT                 DDCKRKLFLVLERLNNANIKVNLDKCKFFVSQLDYLGHILSDKGLSPCPDK
FT                 IATIQKARVPQNVTELKSFLGLINYYNKFIPNLSSKLFHLYNLLKKNVRFV
FT                 WDKHCNEAFETAKRCLLATNFLEYFDAKKPIAIITDASSYGLGGVIAHIVD
FT                 GVEKPICFTSFSLNAAQKSYPILHLEALALVCTVKKFHKYLYGQTFKVFTD
FT                 HKPLLGIFGKSGKNPIIVTRLQRFIMELSIYDFEIFYRPSHKMGNADFCSR
FT                 FPLEQTIPMEYGLEYIRSINFSGEIPLNFNTIAEETKKDDFLQKLIFYMQQ
FT                 GWPDHIGKQYKNVFANQSELEMVDGCLLYQDKVVIPQQLHKEVLKLLHANH
FT                 NGIVKMKQLARRTVYWFGINQAVEKFVACCEVCNGMAVVPKQKIESKWTPT
FT                 TKPFSRIHIDFFHFSGHIFLLIIDSFSKWLEVEWMKRGTDCSKVLTKLVEF
FT                 FARFGLPDCLVSDGGPPFNSLSFVEFLGRQGITVLKSPPYNPASNGQAERL
FT                 VRTTKEVLKKFLIDPDIAEVSLEDQLYLFLFNYRNTCLTNDEEFPSERIFS
FT                 YKPKTLLDLINPKKQFKHNLFAQNDRSYDENASASIRPEPLDPLDNLTSGD
FT                 FVWYKNHNPHNHARWLKAVFLKRVSRHILQVEIGSVQTTAHRTQIRLFNDP
FT                 DSTRPNISLPTPSTQDMAISSTSPVNIGSEHHRGPQDDPPNPGVKRKREQH
FT                 QSSSELRRSKRIKQVKSDSDFVYYDR"
XX
SQ   Sequence 4968 BP; 1577 A; 824 C; 1079 G; 1484 T; 4 other;
     actggcgacg acaggataaa aaaaaggtgc tttttacata gttctactat tgtgtggaaa        60
     atcgtacttt ccattgtgca gtggatagtg gccatcattt cggaggaaat ccatmaaaaa       120
     aggcstatac ttgcaagttg ggaccggaat tgaaagaaga gtaaggctag aaggaacgtt       180
     tttggaccta agaggagtgt tttggaccat cccgagccat actcttgcgc ttggtgcccg       240
     tttgtaagct ggtaatgtga gtatctagtt ggttggactt ttgttcgaca ttttggtgct       300
     caagttgaag ccttttgtta ggaaaagacg ctttgcttct tttgtttacc gtaaacaaag       360
     gtgacattgg tgtctgtaac aaaagcagtg agaatcaata gacacttttg ttaaaaaaaa       420
     acccttgtat taagtgaata ataagcacat ttgattaacg tttgttttct atatcccgtt       480
     atctagaatc gagaatcgtc tgctaactgg cacgatacca gcggaacaag gcatttgttc       540
     gttaagctga agagaatatc cggattactg ttcggacgag tgcgaccgtg cgcccattac       600
     gatctgtttt ggagttgtct ctggctaact ggcttgtgaa ggttgaacac cggaagattt       660
     ggtaagctac ccattttttt ctcattgtcc ccggttgtgc ctaggaactt tcaaaatggc       720
     tcagggtacc ctagctacca ttatggaacc gtatcggaaa ggaacgtcct tttctgagtg       780
     gatwgaacga ttgggatccg tgtttcggtt aaataaaatt aaagaggaag ataagaaaga       840
     ttattttgct acattatgtg gtccgtccgt gtatagtgag gtgaaattat tgtttcctaa       900
     tactaactac agtgatatta aattcgatga aatggtgacg aaacttaaaa gtagatttga       960
     taaaaccgaa tcggatttta tccagcggtt taaatttaac caccgggtac aacaacccga      1020
     tgaatctgtg gaggactttg tcctctctgt aaagcttcaa gctgaatttt gctcatttga      1080
     aaacttcaaa caaaaagcca ttttagacag aattgttgct ggagtcagag acaaggctct      1140
     acaacagcgt cttcttagtg aagaaaattt aaccctttca aatgccgaaa aaatagttat      1200
     tacttgggag atggctagct ctaatgcgaa gagtatgaaa gacaactctg atcaaattgg      1260
     cttaattaga cacgatagat cagcaggtat agcttataag aagttggaga aaactttagg      1320
     gttagccaga tctttgaatg gagacaatga gagaggccct gtgaaggaca ggcttggtta      1380
     ccgtccatat ggtagacagc ggcaggttga ttggaaaagg gacaatagta gaaatcaaca      1440
     gccatatgaa gatcgcgttt gtggattttg tggattgaaa gggcatttaa aacgtaaatg      1500
     cttcaaattg aaaaacctta aaagggacac cgtaaagttt atggacactt ggcaagcaga      1560
     gcatggcagc aaggggcctt cagatgaaac aaccattagt gggctattca acaggcttag      1620
     aaccgacaaa tctgaaagtg aagacgagga atatgacgca ggtgatttag agtgcatgat      1680
     ggtgtcgtct atcaataaga ttaataaccc ttgtttagtt aatacctttg ttgatggaaa      1740
     attgttaaca atggaggtgg attgtggcgc gtcggtgtct gttattggca aaaatcagta      1800
     ttttcgtact tttgacaaac ctttaagcaa aagcaacaaa caattgatag tggtgaatgg      1860
     taacagattg agtattagag gagaagcaaa tgtttctgtt aaatttagag agaaattggc      1920
     aaatatgcag ttattagtga ttgactgtga gaatgaattt attcctttgc tcggtcggtc      1980
     atggctagac gtgttctttt ccaattggag agaatttttc actagtacct caacaataaa      2040
     tggtttgaat gaacatcatt ctgatataac tgttaatgag gtaaagcaaa aatttgcaaa      2100
     cgtatttaaa aaagattttt catttccaat aaaagatttt gaagctgatt tagttttaaa      2160
     aagcgagata ccgattttca gaaaggctta tgatgttcca taccgtttgc gggataaagt      2220
     tttggattat ttggatcgtt tagaaaaaga ggaggtgatc actccaatca agaccagtga      2280
     atgggcgtca cctgtggtga tagtaatgaa gaaaaataac gatattaggc ttgtcattga      2340
     ttgcaaggta tcagtaaata agttaattat tccaaacacg tatcctttgc ccaccgctca      2400
     agatttgttt gcgggtttag caggctgtaa aattttttgc tcattagatc ttgaaggggc      2460
     ttacacccag ttatcattga cggaaaggtc cagaaaattt atggttataa acacaatcaa      2520
     aggattgttt atttacaata gactaccaca gggtgcgtct tctagtgcat ccatatttca      2580
     acaggtaatg gaccagatat tggaaggttt ggaatatgtt tactgttatt tggatgacgt      2640
     tttgatcgcg gggaaagatt ttgatgattg caaaaggaag ttgtttttag tacttgaaag      2700
     gttaaataac gcaaatatca aggtcaatct agacaaatgt aaatttttcg tttcgcagct      2760
     tgattatctt ggtcatatat tgagtgataa aggtctgtca ccatgcccag ataaaattgc      2820
     tacgatccag aaagctaggg ttccccagaa cgttacagaa ttgaaatcat ttcttggatt      2880
     aatcaactac tataataagt tcataccaaa tttatcctct aaattgtttc atttgtacaa      2940
     cttactgaaa aagaacgtga gatttgtgtg ggacaaacat tgcaatgaag cttttgaaac      3000
     tgcgaaacgt tgtcttttag caacaaactt tttagagtat ttcgatgcaa aaaaacccat      3060
     agcaattata acagatgctt caagttatgg cttagggggg gttattgctc atattgtcga      3120
     tggtgtmgaa aaacctatat gcttcacatc gttttcattg aatgcagccc agaaatctta      3180
     ccctattttg cacctagaag cacttgctct tgtgtgcaca gtgaaaaaat tccataaata      3240
     tctatatgga caaactttta aagtttttac agatcacaag cccttattgg gaatttttgg      3300
     gaaatcgggt aaaaacccaa taatagtaac tcgactacag cggtttatca tggagttgtc      3360
     catttacgat tttgaaatat tttatcgacc atcgcataaa atgggaaatg cggatttctg      3420
     ttctcgcttt cccttagagc aaacaatccc aatggaatat ggcttagagt atattagaag      3480
     tataaacttt tctggggaaa tccctctaaa ttttaatacg attgctgaag aaacaaaaaa      3540
     ggatgatttt ttacagaaac ttatttttta tatgcagcag ggctggcccg atcacatagg      3600
     aaaacagtac aagaatgtat ttgctaatca atctgagttg gagatggtag atggctgttt      3660
     gttgtatcag gacaaagtgg tcattccaca acaattgcat aaggaagttt tgaagttatt      3720
     gcatgcaaat cacaatggaa tagtaaaaat gaaacaactt gcaagacgta ctgtgtattg      3780
     gtttgggata aatcaggcag ttgaaaaatt tgtagcgtgt tgtgaggtat gcaacggaat      3840
     ggcagtagtg ccaaagcaaa aaattgagtc taaatggaca cctacaacca aaccatttag      3900
     caggatacat atagattttt tccatttttc cggacacatt tttttactga ttatcgacag      3960
     cttctcgaaa tggctagaag tagaatggat gaagagagga accgattgct ctaaggtgtt      4020
     aacaaaatta gtagaatttt ttgcgcggtt tggtttaccg gattgcttag tttcggacgg      4080
     cggccctcct ttcaactcac tctcttttgt agaatttttg ggaaggcaag gtataactgt      4140
     acttaaaagt ccgccgtata atccagccag caatgggcag gcggagaggc tggtgagaac      4200
     tacaaaagag gtgttgaaga agttccttat tgatccagat atagcggaag ttagcttaga      4260
     agaccagctt tatttgtttt tattcaatta tcggaatacc tgtttgacga atgatgagga      4320
     attcccatca gaaagaatct tttcttataa gcctaagact ttattagatc ttataaatcc      4380
     taaaaagcaa ttcaaacaca atttatttgc acaaaatgac cgttcttatg atgaaaatgc      4440
     atccgctagt attagaccag aaccattaga tccgttggat aatctgacta gtggggattt      4500
     tgtttggtac aagaatcata acccacacaa tcatgcaaga tggttgaaag ctgtgtttct      4560
     aaaacgtgtt tctcgacata tcttgcaggt ggaaattgga agcgtgcaaa ccactgctca      4620
     tcgcacacag atccgtctgt ttaatgaccc ggattcaaca agaccaaaca tctcgcttcc      4680
     tacgcccagc acacaagaca tggccatttc aagtacctct ccggttaata tcggcagtga      4740
     acatcatcga ggccctcaag atgatcctcc caatccggga gtcaagcgta aacgcgagca      4800
     acatcagtcg agctcagagc tgcgacggtc taagcgaata aagcaggtca aatctgattc      4860
     ggattttgta tattacgatc gatagtaaga tattttgaat tccattataa tgtaaagcca      4920
     agttcattca gaatcaatta tagaatcact tcggaagggg gaagaagt                   4968
//
ID   Gypsy-318_AA-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-318_;
KW   Gypsy-318_AA-I; Gypsy-318_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-224
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-224
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 399-399 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 224 BP; 72 A; 32 C; 42 G; 78 T; 0 other;
     tgtagtgtct cactggacgc tttcgagaat gaaatacttt cagtgtatta tattgtattt        60
     cgattatatt aactttacag tgtattcagc tgattaacgg tgtgctaatg aattgtaacg       120
     aattgtaacg atgttgtaag tgaaatggaa taaacaaccg atgagctgtg ctcattcgag       180
     ttctagacgt taacaaaaca agtcctttat tttaaaacat atca                        224
//
ID   Gypsy-319_AA-I repbase;    DNA;    INV; 4682 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-319_;
KW   Gypsy-319_AA-I; Gypsy-319_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4682
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4682
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 444-444 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           462..4583
FT                 /product="Gypsy-319_AA-I_1p"
FT                 /translation="MSAMGTLDHYVAGTPFTNYVERLESLSRFNKWDEENK
FT                 KCILIALSGSVVYDELKLMFPGVELQTLKYDDMIKKLKERFDKVEPDMMQR
FT                 YRFYNRYQRPDETAESYILAVKLQAENCDFKQFKETAIRDRLIMGLFDKEL
FT                 QKKLLMDEELSLAAVEKKIISSEVAGNQANSIFGPERRESSEISSIKNRLG
FT                 RKEYDGNPREYEREPRDYGRRSREFYRQPRDHSRSTGERKHVSFRERSTSN
FT                 NRDVNPYANAVCNYCKKKGHLRRQCYSYRNRNSVRFVGQGSKTETSYSFKR
FT                 DKENSSSEVESDGMECMLITAVNKISEPCMVEVVVEGNKMRMEIDSGAAVS
FT                 VISDIDYLEFFGTVPIDACNRQLAVVNGDSLYIVGEIKVRVVLNGRKSYQK
FT                 LIILECEKNFTPLVGRTWLDFYYPEWRSGFMQKASVNNLVQSKGTDKIVAS
FT                 LKQKYSKIFNKDFSEPIEGYEGELQLKHDQPIFKKAYTVPYKLKDKLDRHL
FT                 NMLEQQNVITSIKASEWASPVIVVVKKDQDIRMVIDCKVSINQVIIPNTYP
FT                 LPLAQDIFASLAGCTVFCCLDLAGAYTQVQLSERSRKFMVINTSKGLYTYN
FT                 RLPQGASSSAAIFQQIMDQILQGLKNISVYLDDVLIAGKDLAECLKNLELV
FT                 LERLCKANVKVNFSKCKFFVNKLPYLGHVVTDKGLMPSPEKLSTIEQAKPP
FT                 KNVSELRAYLGLINYYHRFVPHLSTKLSSLHALLKNDKHFEWTEMCDNAFK
FT                 DSKIALLKADILEYYDPNKPLVVVSDASSYGLGGVLAHEINGKEKPICFTS
FT                 FSLNSAQKKYPILHLEALALVCTIKKFHKFLFGQKFKVFTDHKPLLGIFGK
FT                 SGANSVFVTRLQRYIMELSIYDFEIAYRPSSLMGNADFCSRFPLDQMVPKS
FT                 LDTEHVKSLNFSHSLPIDNRKIAEGTTTDPYLAEIRRFVKEGWPMSINERY
FT                 KSMYSLRADLEVTENCVMYQGRVIIPVDLRPKILKMLHANHIGIVKMKQLA
FT                 RETVFWPRINMDIEDFLNGCEICIKSSPAPSKPTENKWIPTTRPFSRIHAD
FT                 FFYFDRKMFLLIVDSHSKWVEVELMQNGTDAKRVIDKFMAVFARFGLPDVV
FT                 VTDGGPPFNSKEFFSFLVNHGIKPLKSPPYNPSSNGQAERLVRVVKDALKK
FT                 HLLDPELRRLDMVSQLNYFLFNYRNQITTTDGFIPSSKMFSYKPKILMDLL
FT                 NPNRQYKQYLENPKPIDNAYIPAEQDPDPFSKLVVGDKIFYKNFRKTDPQR
FT                 WIEAKFIKQLSKNIFQISLHRNVLSAHRNQLKLLKSTRGSALLVPSKQSRK
FT                 RSSREMTDENSVCMGFEVEPKDQSFSMFMDNLERSSGANKPKRLKRSRSPI
FT                 ITRSRSRTCEM"
XX
SQ   Sequence 4682 BP; 1556 A; 788 C; 1016 G; 1321 T; 1 other;
     gtggcgacga gataaaatta attacaacct tgtgcagtgt tagtgatcgg atatatcata        60
     agtgatcaag ccaccggctg ctttgttcta cactatagtg ctacagcgga acagaaaact       120
     tttgtttcca gcgccggctg tgatttgmaa aagccagacc tagcgtaggc aattgaatgc       180
     tgaaacgtag tggttcgtaa attacggtgc gaattaacag aaaacatatt cgaagcggta       240
     agtgaaatta gcaaatttac aagaccgtgt gcgaggaata cttagtgaat cattaaaaca       300
     gtgagcagtg aaaggcgcgc aaaagctgat aactcaattg ctgtgagtgg acgaataaga       360
     gctcagtaac ccaggacgag atcattgagt gggtatatcc agagaaaacc gtaagtgcat       420
     tttatctaat ttttgtctct ttctcgaagc tctctcagaa aatgtctgct atgggaacgc       480
     tggaccacta tgtggcaggt actcctttca ctaattacgt tgagagactg gagagcctta       540
     gccggtttaa caaatgggac gaagagaata agaaatgtat tctaattgct ctgtctggtt       600
     cggttgtata cgatgaatta aagttaatgt ttcctggcgt cgaacttcaa acgttgaaat       660
     acgatgacat gattaaaaag ttgaaagaac gtttcgataa agtcgaacca gacatgatgc       720
     aaagatatcg attttataat cgatatcaac gccctgatga aacagctgag agctacattc       780
     ttgctgttaa gttacaagct gaaaattgtg atttcaagca atttaaagaa accgcaattc       840
     gagataggct tattatggga ctttttgaca aagaattaca gaaaaagttg ttgatggatg       900
     aggaattgag tttagcagcg gtcgagaaga agattatcag tagcgaagta gcaggaaacc       960
     aagcgaattc tattttcggg ccggagagac gtgaatcatc tgagattagc tcaattaaga      1020
     accggttagg gagaaaagag tatgatggaa accccaggga atacgagcga gaacccagag      1080
     attatgggag gagatccaga gagttttaca ggcaacctag agatcatagc cgaagcactg      1140
     gtgagagaaa acatgtgagc tttcgtgaga ggtctacttc aaataacagg gacgtgaatc      1200
     catatgcaaa tgcagtttgt aactactgta aaaagaaggg ccacttaaga cgacaatgtt      1260
     attcttatcg taacagaaat tcagttaggt ttgttggaca aggttcaaaa actgaaacat      1320
     catatagctt caaacgcgac aaagaaaata gctcatctga agttgaatct gatggtatgg      1380
     aatgcatgct gataaccgct gtaaacaaaa ttagtgagcc ctgcatggtt gaggttgttg      1440
     tagaaggaaa caaaatgcgt atggaaatcg attcgggagc ggcagtatct gtaataagcg      1500
     atatcgatta cttggagttc tttgggacag ttcctattga cgcctgtaat agacaattag      1560
     ctgttgtaaa cggtgatagt ttatatattg tgggagagat caaagttagg gttgtcttga      1620
     atggaagaaa gagctatcaa aagttgatca tcttagaatg tgaaaagaat tttacgcccc      1680
     ttgtcggtcg tacctggctt gatttctact atcctgaatg gagatcaggc tttatgcaga      1740
     aagcttcggt taacaatttg gttcaaagca aaggtacaga taaaattgtt gcaagtttga      1800
     agcaaaaata ttcaaaaatt ttcaataaag atttttcaga accaattgag ggatatgaag      1860
     gagagttgca actaaaacat gaccaaccga tttttaagaa agcgtacact gtgccctaca      1920
     aactcaaaga caagttggat cgtcatctta atatgcttga gcagcaaaat gtaataacat      1980
     ccattaaggc cagcgaatgg gcttcaccgg ttatcgtagt tgttaaaaaa gatcaagaca      2040
     tccgcatggt gattgattgc aaggtatcta ttaatcaagt tattataccg aatacttatc      2100
     cgttaccatt agctcaggat atatttgctt ctctggctgg atgtacggtt ttttgctgtt      2160
     tggatttggc gggggcttat acccaagtgc aactctctga gcgttctaga aaatttatgg      2220
     tgataaatac atccaagggt ttgtacacgt ataatcggct cccacagggt gcttctagta      2280
     gcgcagcaat attccaacaa attatggatc aaattctgca gggtttgaaa aacataagtg      2340
     tgtatttaga tgacgtcctg attgcaggga aagatttagc tgaatgtttg aaaaatttgg      2400
     aattagtttt agaacgttta tgtaaagcta atgtaaaggt taatttttca aaatgtaaat      2460
     tttttgtaaa caaattacca tatttaggtc acgtagtgac agacaaaggg ttaatgcctt      2520
     ctccagaaaa gttatcaaca attgaacaag ctaaacctcc taaaaatgtt agtgaattaa      2580
     gggcttatct tggcctgatt aattattacc acaggtttgt accgcacctt tcaactaagc      2640
     tgagcagttt gcatgctctg ttgaaaaatg acaaacattt tgaatggact gaaatgtgtg      2700
     ataatgcgtt caaagacagt aagattgccc ttttaaaggc agatattttg gaatattatg      2760
     acccgaacaa accacttgtt gttgtatcgg atgctagttc gtatggttta ggaggagttt      2820
     tagcgcatga aatcaatgga aaagaaaagc cgatatgttt tacatcgttc tctctaaact      2880
     ctgcccagaa aaagtatcca atactacacc ttgaagctct ggcgttagtt tgcaccatca      2940
     agaagttcca taaatttctc tttgggcaaa aatttaaggt tttcacagac cacaagccat      3000
     tattaggaat tttcggcaag agcggagcta actcagtttt tgtgacacga cttcaaagat      3060
     acattatgga gttatcgatt tatgattttg agatcgctta cagaccttca tcactaatgg      3120
     gaaacgcaga cttttgctcg cgattccctt tggatcaaat ggttcctaaa agtttggaca      3180
     cggagcatgt taaaagtttg aacttttcac attccctacc aatagataac cgaaagattg      3240
     cagaaggaac tacaacagat ccttatttag cagaaatccg gcgttttgta aaagaaggtt      3300
     ggccaatgtc gataaatgaa cgatacaaat ctatgtattc tttacgagcc gatctagaag      3360
     tcacagaaaa ttgtgtcatg tatcaaggaa gagttattat tcctgtggat ttgaggccca      3420
     aaatactaaa aatgctgcat gctaaccaca taggcatagt taagatgaaa caattggccc      3480
     gagagacagt attttggcct cgaattaata tggatataga agatttcctc aatggttgtg      3540
     aaatctgtat aaaatcatct ccagcgcctt ctaagcctac ggagaataaa tggattccta      3600
     cgactagacc tttcagtcga attcatgccg actttttcta ttttgatagg aaaatgtttc      3660
     tattaatagt ggacagtcac tctaaatggg tggaagtaga attaatgcaa aacggtacag      3720
     atgcaaaacg agtaattgac aaattcatgg ccgtttttgc tagatttggg cttcctgacg      3780
     ttgtggttac cgatggtggc cccccattta attcaaagga gttcttttca tttcttgtga      3840
     atcatggaat aaaacctttg aaaagccctc cttacaaccc aagtagcaac ggtcaggctg      3900
     aacgacttgt tagggttgtg aaggatgctt tgaagaaaca tcttttagat ccagagttac      3960
     gaaggttaga catggtgagt caattgaatt acttcctatt caactacagg aaccaaatca      4020
     ctacaacgga tgggtttata ccttccagca aaatgtttag ttataaaccc aaaattttga      4080
     tggatttgct taatccaaat agacaataca agcaatactt agagaaccca aaaccaatag      4140
     acaatgccta catcccggca gagcaagacc cagacccgtt tagtaagctg gtagtggggg      4200
     ataagatatt ctataaaaat tttaggaaaa ctgatccgca gcgttggatt gaagctaaat      4260
     tcattaaaca actttccaaa aatatttttc aaatatctct ccataggaac gttttatcgg      4320
     cgcacagaaa tcaacttaag ttgctgaagt ctacgagagg ttctgcactg ctagtcccgt      4380
     caaaacaatc tcggaagcgc agtagtaggg aaatgacaga cgaaaatagt gtttgtatgg      4440
     gctttgaagt agagcctaag gatcaatcat tcagcatgtt tatggataat ctagaaagat      4500
     caagcggagc aaacaaacct aagagactga agcgcagtag aagtccaata attacaagaa      4560
     gtcgctcgcg aacatgtgag atgtagtata agtagataga aatacaataa tgaactatta      4620
     gcattaagta gaattttgtc aatatgaaat tatgataaat tgttttccaa agagggaagg      4680
     at                                                                     4682
//
ID   Gypsy-319_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-319_;
KW   Gypsy-319_AA-I; Gypsy-319_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 400-400 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 232 BP; 88 A; 41 C; 39 G; 64 T; 0 other;
     tgttaagtat tcccggttcg gtaaatccgc agaaacccca acggattctg attgaactac        60
     cacgagcaaa ctgttcagta ctgtaaatgt atgtgacacc aatgtgtata aaaaggaagc       120
     cgaaataaac caaatagtca gttcttaaca gaaatcctaa aagttaattt atttcttata       180
     ataagaaacg tctagagata tttaataaag ttcttgttca cagaacggaa ca               232
//
ID   Gypsy-31B_LMi-LTR repbase;    DNA;    INV; 2522 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31B_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2522
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 2522 BP; 929 A; 492 C; 520 G; 580 T; 1 other;
     tgaaagttga ccactgcaga tgtaatgtga tatttagcta ttttagctga gtatattcac        60
     tgtagctgtc tgcttactag aataaactga tcttagtctc ggtaaataat caaaaatgca       120
     ctgcttaaat agtgtaatca aatctggcat caattaattt aatgaaaaac tcacagttat       180
     aaaattagta aatagagtct tgacgagagg agccaaaacc aagatcaaca ttaatttaat       240
     gaaatgattc tagtagcaga aaacatagaa agattacttt taaaaattat agttctgggt       300
     gtacaagcca gttaaaagat tcatgtaaac tacttgatgt gctgctgaaa cttgttccct       360
     ggcccaaatt gagaactagt ttgaccttaa attactctca cagccgcaag ttagaaaagc       420
     agcggtcata tgaattgtag ctcacaggaa tcacacttac tatgaaacga gccaccacaa       480
     ataaattact ttatgaaagt ggcggacgaa acaagaggcg caacggaaat attaacaata       540
     atcagcatct gaatctgttc tcagcacatg tgaaacaata tttataaaga aaggggtagg       600
     tattctcaaa ctactgtatt aaaaatagga taagatttta ctgaacaaaa tgcttttatt       660
     cagtgtaagc acaagcacgt ggggggaacc aatttagtta cacaataaaa acgcatccca       720
     ttgaaactag ctcacaagca ctatcatatc ttatgctaaa aatgcccata atagaaattt       780
     aaatttatct acactgaatt gaattttagt tgggggagga tttacaaata acaagcattc       840
     atccacacac acacgcgcaa tgcaagcgaa acttactaaa atcagcgtgc tgaacaaggc       900
     agaaacggcc gtcgatctcg taggggaagt ttcagcgagc caaggcgaag gacacaacac       960
     aataaaaata actttcgtac gtggctggtt ctattctttc ttaactggag atggcgcgta      1020
     tagcaacaaa atctgtttgc atttgaagct aaaccaagcg ctggcaaact aactgaggcg      1080
     cgcaccacgt ggttccgaaa tccagtaaaa tgaagaaaat cagttactaa aatattacga      1140
     aaattaacta tagcatgcaa cccatagaaa tgcgtggaat gttacaagga aacggaagaa      1200
     acactgttcc acacgatagg agaactttcg agagatggat gaggtccgct ctcagaaatc      1260
     atcaaagttt aataaattca gattcgcggt aaaacaaata caaaatacgg catgcaacgc      1320
     atcgaaatac gtagaatgtt gtaaggaaac gaaagaaaca cagatatacg cgatagcacg      1380
     aactttacag agaagggtga aatcctatct caaaaatcat caaagtttaa taaattcgga      1440
     gtcgcggaaa aacaaatatg aaatacggca tgcaacctat agaaatgcgc agcatttcat      1500
     aagcaagcaa atgagaaagg ttgtacaggg ctagtaaaga atttacagac cgcggttggg      1560
     aacagagtac aagttcgaga ataaaatagc aatttacaac aggcggaaga gggaagatcg      1620
     cgcagtacta ccagaaaatt gaaagataca tgcagttatt ctagcctgaa gggcatagaa      1680
     caaacacggg ttccgctgaa ggctttgttc tgagaacaca ccacgtggag tacatgttac      1740
     tcgcggacag agaaaacgaa cagtaaaatt gcacacgagt tacaagaagc aaaaatcctg      1800
     cttagtagtc gcgcatcttt cgatgcatgc tcggagaaac ttactccgaa aatgaatgca      1860
     agttctaaaa cctaagttga actaactgaa caacgaattg ctgccatctc caggctgaaa      1920
     gagcagagct aactcaccat tccgaaggac agccaccgaa cgagtgagac tttggcgggc      1980
     catgtgggcc tccgcccgga aatcggcaag gccgagggag ccaggggtgg tgggggaaac      2040
     gcagagattc acacaagggc gcgtataggc tcacaccagc ctcttgccaa cctaacttgc      2100
     aacgaaaggg tgtggaaacc tctttkgaga gcatagaaag agaggttggt actagccacc      2160
     tatcgacgca ggtccagaga gcatcgccca aggctaaatt tctcatactt ccagacacac      2220
     tagcacgcca aaaaattctc atactcacac atgcagagac aaaacatttt acactcttat      2280
     aggcacggtg gcgagacgga gaagccgttc atgttgccac attgattgac acactaataa      2340
     attaataaca taaatctaac acaaatgaag ttaaatacga ttactaataa taacatttaa      2400
     aaacgagaac tgaaaggcta cgttactcct catgcctcag aaaacgaata gagtgtcgtt      2460
     aagcgacttt aaataaaata caagattaaa atttagggaa ggcggcagac agccgtcttt      2520
     ca                                                                     2522
//
ID   Gypsy-31C_LMi-LTR repbase;    DNA;    INV; 2473 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31C_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2473
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (28-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 2473 BP; 531 A; 506 C; 532 G; 904 T; 0 other;
     tgaaagacgg ctgtctgccg tcttccctag gtttttaact ttgtaaatta tctaagttca        60
     ctagacggcc ttttttgcta aacgagaacc cctctcgttc ggaggcatga ggaatagcat       120
     ttcatttcat gtttttaaat gttagtttct gtaatactgt gttaatattg ctgggatttt       180
     attatgctaa taatttatca ttgtgtctat gaatgtggca agatgaacgg tttctccgtg       240
     acgccactgt ccctgtgaga atgtgtactt gctttattct gtatgtgcat gtatgagaat       300
     cttctagcat gggagtctga gtgtatgtat gagaattttc gtcgtcggct gctggctgct       360
     cgctactagt gtttctctgg cttcgtgtcg ataggtagtc gttaccaacc tctgcttttg       420
     atgctaccaa agaggttcct ccaccctttg gttacaagtt gggttggcaa tgcccagtta       480
     gcgagcctcg gcaggacgcg cgagtttaag ctcccccacc acctcggttt ttccgggggt       540
     tttgccgatt tccggggatt tccggtggtg gcggggctcg ggggccgact ggacattctg       600
     tggctgcgct tcgacctggt aagacgttct gattttcttt cctcccttga gatggtagcg       660
     attcgttgtc tggtttgtta gacttcagat cttaggttca tttttcggga taagtttctc       720
     cgatcatgta cggaaatgta ttcaatttca tttcggtgat tttgcatagg taaacgcggt       780
     gaatatgcaa ctaattcggt ttgataacgg ctgggaatcg gtaacctgtg tgagactagc       840
     tggcggtgta tgaactctgt ttaatttctt tctagctttg tggaacgcga ctaatatgcg       900
     ggaatatttt tattctgtgt agtgcatgtg aaatattctt ttccgttttc tccttccgcg       960
     agtgatatgt actccacgtg gtgtgttctt agaacaaagc cttcagctac ccctgtgtct      1020
     gtttctatgc ccttcaggca agaaattatg catgtatctt tctgatttcc attagtacat      1080
     cgcgatctcc tctccgtcta ttttaaattg ctgtttcgtt tccaaacttg tactttgcat      1140
     tcagactccg ccagtaaatt ctcttctagc cttgtacgac cccctttatt agcttgctta      1200
     tgaaatacta cgtatttcta ggggctgcat gccgtatttc ttagttgatt tactccgact      1260
     ttgaatttat tccacttttc tgatttttga agactggact tcgtccatcc gtgtaaaacc      1320
     ttcccaatcg cgtctaactg tatttcttta gcttccttat gatatcctac gcatttctaa      1380
     gggttgcatg ccgtagctat ttttctttat ttttcggaaa ttgaattttt atatttttac      1440
     tggttttcgg aaccacgtgg ctccgaactc cgacttcaag ggtttatagc tagtcacttg      1500
     agttctcgcc actgctcaca caccagtgcc ttcctattgt gtattcttgc ttcgtaatct      1560
     gtgattccgt tggtttttgt tgaaatgaat acgatcttta agcacttcgc cttcagtggg      1620
     gtgcgaatat gtaatgtagc agacacgtgc cgtgtgtctc aataattccg catgctcacg      1680
     gtttgatttg aatggaaatt aatctcgcta ttatcgcgta ccatctcaag taaagaaaga      1740
     cagaccagag cgacctacga agtttatttt tcttgtgttg tgtggtacat cctggttcgc      1800
     tgaatttcgc ctacgatagc ggcgcctgct tctgcttcgt atcagcacgc tgagttgggt      1860
     gagtttcgct ttgcttcgcg cgtgtgagtg gctgaatgct tgttgattgt aaatccctcc      1920
     cccgacgatg ttcagttcag attactttaa gttaattttc aatgggatgc atttttattg      1980
     tttaacaaaa ttggttcccc catttgctca tgtttgaact gaataaataa tttattgtca      2040
     gtgaaatttt atcctcttat gaatattagt taatgaatac cctccctttt ttatttaatg      2100
     ttgtttttca ccagtgctga gaacaaattc agatgcaaat tatcatattt ttaattccgt      2160
     tgcgccataa atgttctcac agccaccttc atgaaatggt ttagttcggg gtggcttgta      2220
     tattaatgat tgtgtgtaat tctcgtgatc tacgacgtat gttggccacc gtctctttgt      2280
     cttcctgctg ctaaagtaaa gtttgagtca gttctaaatt ctgggccagg gaacaagatt      2340
     ctgttgcagg aagtagtcag tagttcacgc gaatccttta gctggtttta cggccagagt      2400
     tatatgttta aagtaagctt ttaactggct cctttcagct agagttaatt ttacaattaa      2460
     cggtggtctt tca                                                         2473
//
ID   Gypsy-31_AA-I repbase;    DNA;    INV; 6109 BP.
XX
AC   AAGE02023662;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_AA_;
KW   Gypsy-31_AA-LTR; Gypsy-31_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6109
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023662; Positions   28124   34232.
XX
CC   Positions [1781-2320] - Reverse transcriptase
CC   Positions [3464-3835] - Integrase core
CC   'ATAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1100..3292
FT                 /product="Gypsy-31_AA-I_1p"
FT                 /translation="MVHEENNFIKMVGIGGMRLNALIDSGCKVSTIQWRFA
FT                 GNAGRLEDTNTTLVGFGGRKVKVDKMVKTTVKLDEIEVSVKLNVVPNWTQS
FT                 TALILGRDVLNHDGVVMVNKSGEVRFQRDGSVRTVEAQPESQMVVELQKRQ
FT                 YETMFTIDDRSEFEEIRESDLNADGTKEEILKLVNEFRSCFAKNMKELGIA
FT                 KDTEMKIELSDKDPVYVKPHRMEFAREAALREIVEEFVDANIVVESVSPYS
FT                 SRVVMVPKKDGSYRMAVDYRLLNKKTVKDRYPMPDIEWCLNKLSGAELFIT
FT                 VDLYSGYYQIPVAEESQACTAFSTRDGHYHFLRMPFGLVNGCSVFQRAMNN
FT                 LTAKLRKEGIVVYIDDLVIGGKCVVELLEKFRRLLEVLEESGFTINLKKSH
FT                 FFKSTIEFLGFEISKKDVRPGSAKTKAVKNFPVPQTVQQVQQFLGLAGFFR
FT                 KFVPRFSLVASPLFALLKKEARFGWEREQEEAFVALKKVLSSRPLLVLFDP
FT                 KREVELHTDASKDGLSGILLMQMDEGLQPISYFSKKTTEAESNYHSYELEV
FT                 LAVVTSVERFRNYLIGKFFPIRTDCTAVRDTYEKREMNARIARWFLKLQEY
FT                 DFKMVHRPGSSMRHVDALSRNPVESGSETLPVLAEMLQRQDPKLLLIIDTL
FT                 RREPTTGEDRQVKLNYELVQNRLMRIVDGLKLWVVPSRVRWRLVNTYHDEM
FT                 GHFGEEKVLELLRDKFWFPKMRKYVRSYIEA"
XX
SQ   Sequence 6109 BP; 1833 A; 1065 C; 1592 G; 1619 T; 0 other;
     agctgtagac aggatgaaag ccttgtgtgg tacgggccag tgcgaacaat agatacggtg        60
     cgcattgtcg gatggtgaaa tttgcaaatt gtgaacgtgt ggtttttgcg gagatttgtt       120
     aagcacacgg ttcaggtgtt agcgaaggaa gttcgcggtt gataattcac gatacggtag       180
     tcgtggatga gtacggacga cgaagatagg tcggacgttg agacggctgg ttatagagac       240
     ggtgaattta gaacgccggt gtgtttcgta accgatcgaa aagctaagca aaagtcgcgc       300
     gtgtttgttg ctgatggatg caaaattgaa agcagattta gaagccaaag aagaagagat       360
     ccagaaggtc aaaatgcaat tgttgcaaat cggagctgga acgagtggtg ggacgagttt       420
     cagtgtagat cgccggccag atttttggga gctctgcctt gtttgtctgc cgaagaatgg       480
     atcgaggaga tcgatactac ggcggctcat tataagtgga aagaagacac aaagctccat       540
     tgtgctcggt tgaatttgga gggctcggcg aagttgtggt gggctgaggt tcaaagcgtt       600
     gcgactacat gggcaacctc ctcgcagaaa ttggttaatg cctacccgtc ggcgcgtgat       660
     ccgattttct accacaatca gatgtcccaa cgaaagaagc aaaaagagga aacgttggat       720
     gagtatgtct atacccaagt ggctatggga aagcgtgctg gttttcaaga atcagtgata       780
     gtgaaatacg taatcaatgg gttgagggac ttcacggcga actgtaaagt gaccttggcc       840
     gggaaaatag ctaccgtcga agcgttgatg gaaatggatg gagggtttca tggacgctcc       900
     ttcggagaga gatgtagtga aaattgggga gaaaaggaaa gagaagcgtg ccttgtgcta       960
     taggtgtaat aagcctggct acaaagcgat agtgtgtaaa gcgacagcag atcggagttg      1020
     tttcagctgt ggagatagtg gccatcaggc gtagagttgc cctaaatcgc ctcgggccgg      1080
     accatcgtcg cgagtgcaga tggtccacga agagaacaat ttcatcaaaa tggttggaat      1140
     aggaggcatg aggttgaacg ccctaattga ctccggatgc aaggtgtcga ctatacagtg      1200
     gcggttcgcg ggaaatgcag gcagattgga agacacaaac accactttag tgggtttcgg      1260
     tggaagaaaa gtgaaagtgg ataaaatggt gaagaccacg gtgaagctag atgaaataga      1320
     agtttcggta aaattgaacg ttgttccaaa ctggactcag agcacggcat tgatcttggg      1380
     tcgagatgtg ttaaatcacg atggcgtagt gatggtgaac aaaagtggtg aagtgaggtt      1440
     tcagcgtgac ggtagtgtgc gtaccgtgga ggcacaacct gaaagccaaa tggttgttga      1500
     actccaaaag cgacaatatg agacgatgtt cacgatcgat gaccgttccg agttcgaaga      1560
     aatcagggaa agtgatttga atgctgatgg cacaaaggaa gaaattttaa aactagtgaa      1620
     tgagtttcga tcgtgctttg ccaagaacat gaaggaattg ggaatcgcga aagacactga      1680
     gatgaagata gaactgagtg ataaagatcc cgtatatgtg aaaccacatc gcatggaatt      1740
     cgcccgagag gcagcgttgc gggagattgt ggaggaattc gtggatgcca atattgtggt      1800
     cgagtctgta tcgccgtata gcagtagagt ggttatggta ccgaaaaaag atggatcgta      1860
     tcgtatggca gttgattacc gcttgctgaa taagaagaca gttaaggacc gttacccaat      1920
     gcctgatata gagtggtgct tgaataagtt gagtggggcc gagttgttta ttaccgtgga      1980
     tctttattcc gggtattacc agattcccgt cgcggaagaa agtcaagcat gtacagcttt      2040
     ttcgacaagg gatggtcatt accatttcct ccgtatgccg tttgggctgg tgaatggctg      2100
     ttcggtattt cagcgggcaa tgaacaattt gacggcaaaa ttgcggaaag aaggtatagt      2160
     cgtctatatt gatgacctag tgattggggg aaaatgtgtg gtggaattat tggaaaaatt      2220
     tagacgtttg ctggaagtgt tggaagaaag tggttttaca atcaacctga agaagtcgca      2280
     tttctttaaa tcaaccatcg agtttttggg gttcgaaatc tcgaaaaagg atgtgcgtcc      2340
     cggatcagcc aaaacaaaag cagtgaaaaa ctttccggtg ccgcaaacag tgcagcaagt      2400
     acagcagttt ttgggtttag ccgggttttt ccggaaattc gtaccgcgat tcagtctggt      2460
     ggcatcgccc ttgttcgcgt tactgaagaa agaagcacga tttggctggg aacgagaaca      2520
     agaagaagca tttgtggcgc tgaagaaggt gttgagttca cgaccactgc tagtgctgtt      2580
     tgatccaaag cgggaggtcg aattacacac cgacgcttca aaggatggtt tatcaggaat      2640
     cctattgatg caaatggatg agggccttca accaataagt tatttcagta agaagactac      2700
     cgaagcagaa tccaattatc acagctacga gttagaagtt ttggcggttg tgacgagtgt      2760
     agaaagattt cgaaactatc tcattgggaa attcttcccg attcgtacgg attgtacggc      2820
     ggtgcgcgac acttacgaga agcgcgagat gaatgctcgt attgctaggt ggtttttaaa      2880
     gcttcaggag tacgacttca aaatggtgca ccgaccaggg agttcgatgc gacacgtaga      2940
     cgccctcagt cggaatccag tggaatcagg aagtgaaacc ttaccagtgt tggcagagat      3000
     gttacagagg caagatccca aattgctgtt gataatagac actttgcgac gcgagcctac      3060
     tacgggcgaa gacagacagg ttaaactaaa ctacgaatta gtgcagaatc ggttgatgag      3120
     gatcgttgat ggtctaaaat tgtgggtggt gccgagcaga gtgcggtgga gattggtcaa      3180
     cacctaccac gatgaaatgg gacattttgg tgaagaaaaa gttctcgagt tgttacgtga      3240
     caagttttgg tttccgaaaa tgaggaagta tgttcggtca tatattgaag cctgacctca      3300
     gtgtgcatac tacaagtgca aagggaataa gccagagggg tttctgcacc cagtgccgaa      3360
     agaaccagta cccttcagca cagttcattt ggaccacatg gggccgttcg ttcgctctgc      3420
     tcgcggaaat tgttatgtgc tcctgttaac ctgcgggttt tagaaatttg tgatagtccg      3480
     cgcagtgcga tcgacgcaga ctggcccggt actaagtttt ttgattgaga ttaccggagt      3540
     gtttgggacc cctaaccgta tagtgaccga cagaggtacg gcgttcacgt cgaaacagtt      3600
     cgtagaatat tgtcgtgtta atcaaattca gcatatcaag actgcagtgg ggagccccag      3660
     agcaaatgga caggtggagc gatcgaacaa aactgtactc aatgctctgc ggtgcaccgt      3720
     gggtgagaac aaaacgcgct gggatgaacg agtagcagca gttcagtggt caatcaattc      3780
     ggtggtgaat tcgaccacac agttggcccc gaatgcgtta gcgttttcat tcaagccgag      3840
     agacgtaaat caaaacgcga ttgtgatggc gttgcacgat gaagcggata acgtggtggg      3900
     ggactcgaat gaacttaggc agcgagcgat gtcaagaatt acagccagac agcaggtgca      3960
     gaaaaactac ttcgatgaat agcgccgaaa acctacagaa taccaggtag gtgacatggt      4020
     taaagttgaa cgagatctga ctgctatggg acacagccga aagttggagt ctagattcaa      4080
     ggggccgttc gtggtgatga aaatactgga taacgatcga tatgagcttc aagaaatacc      4140
     aggaacgaaa ggctcgagga ggatgggcta ctacagtgta ttcgggggac agaatcaaac      4200
     gctggtgtca actggcagat atagatggtt gtgaaacatc caacggagaa gaagagatgt      4260
     gaattgtttg actagacgtt taacttgaaa ttagtaacat tttcattttc attttgcagc      4320
     gtttggtggg gcaatgagag cgcaagtcag tccaaagccg ggggaaggga taggtaatgg      4380
     ccgtaatagt ctatgcggac cacttgaaca ccatcggaaa ggataagaag ggttggggta      4440
     gggtataggg aattggagaa gacttaacac agtaatgcga ttaatgctgc aaaatgtaaa      4500
     tgtgctgaaa gcaatttaat ttgagttttg aagtttgatt tgacttatta aaattccaga      4560
     tagatcggcc attgtacaag taagaaagag tatgctgatc gctttctaga aattttataa      4620
     acaacaaaat aataacaata tgagaatatg agagtgatgc taagggctgc tgatggcacg      4680
     atgcggcgct ttaggagatt ttgatactga ttgaacatta ctataaagag cgcaattcaa      4740
     tcgatggtga taactttaca aactgtatct gttttgcact gattgacgat gctgatttat      4800
     ataaaaatat ttgatattat tagttcattt gtttgtgtga tctatcagtt aataatggaa      4860
     aaaatttaca tacccttgat gatgatactt ccctgaccag aaatattcta ttttgagcat      4920
     ccttttcgaa gctattctat ccaggtatcc atgtactgct ttcaatcctg aaattattct      4980
     tattgtgcat gctcatgcat tatattagtg atgctcataa tcatgcaaca gataagaaga      5040
     agagaaaaag agaatatagg aacagtgatt agtaatgagt taattatgta gttttgttag      5100
     aattataaac aattaaacag tagtaatgaa tagcttacaa aaattttgca gcatagctga      5160
     gcctttcgga tcgtaagacc gatgtatgaa aataatttgt ttcgaaattt tccgcgtggt      5220
     cttctagtgc ccctattaga taagaatcag tcatagacat acataccgaa tgctcgccat      5280
     gaccctatga ccaacatttg tatatgtata gccttagctg atgtggcttt tctaataggt      5340
     agttctttca ctcattgatt gtcttcaaag ccttgtcaag tatagaaaat tgattttatt      5400
     ttatttatta ctacattgaa gctacattgt acttattaaa tattaggtat tattttgttt      5460
     ttatcactat tgatatgatc aaggccagaa ttcccagtga gtgaagaatt ttatagtact      5520
     agaacaccat agaagatcgc taaacattac ctaatcatgg aacggctttt tgctctatta      5580
     ttttaagtag atgctattga tctccctttg ctcctatccg caacccggtg cacgcgccct      5640
     gttggttttc gaaaacctcg tagaagatta caaaccgtca atggcattcc caattactac      5700
     cccacattgc acattcaagg gtctgattgt gctcctctct gtaatcttct cgccagtttg      5760
     aaattatatt ttcccgaagt gaaagtaatt ttgatgagtg atagcgtagt gcagcccaac      5820
     tgcatagtac agtagtttaa ccagaatctt taggtcagaa gataaaattt aaatgttgta      5880
     ataaagaggc cattgccatt gctttgaaat tcaccctaca tctaatcaaa actactaaca      5940
     acagcgatca attatcaaaa ttcatcgctc cctggaaaat ataattccaa gcccagggtt      6000
     taacttgaaa ttagtaacat tttgtagcaa aactactaag aaaagtgcga agtattcaaa      6060
     aaatgaatta gaaacctaat ttcaaatcag gttagatagg gtgtccgaa                  6109
//
ID   Gypsy-31_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   AAGE02023662;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_AA_;
KW   Gypsy-31_AA-I; Gypsy-31_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023662; Positions   27882   28123.
XX
SQ   Sequence 242 BP; 73 A; 48 C; 47 G; 74 T; 0 other;
     tgtaaacgga tgaaaaatag ctggtgctat cggtgatgag tgaactgaat tctctgagtg        60
     tgaactaata ctacatcact gtgcaaaata atactattta tacagcaaaa tatataccct       120
     tctagtcagt ctaaattaaa ccacgaaagt agacagatct acgttatcta ctccgaaagg       180
     tctcggttct ctcggtagtc cgctttgagg tcgatgtccg ttcgttccgc atatttgtta       240
     ca                                                                      242
//
ID   Gypsy-31_AnFu-I repbase;    DNA;    INV; 4338 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4338
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2916-2916 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..4320
FT                 /product="Gypsy-31_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTIEELCENLTKIGLARKCEDLGLVTTGGKRDMAKR
FT                 ILHHTTMAATDENDENYHQNREPHDEDEKDAVLLHNDGVRENDDSHTHNDE
FT                 NGDREDGGARATSLNHDDERHDDDSVSENDYSHTDDDDSDDDEVLFQTAMR
FT                 SSTPMTKRRNFSGTSRVYSFRDMEESIDTFGAKEGENVRLWLKQLEMISKS
FT                 ARWNNEQMLIMCRKKLTDTARRFVFSLRDASKYSILKKALIKEFAPLVRAS
FT                 DIHRTLAGRKKKSSETMLDYIYEMQRIALPIDLDEPSICEYIVDGVTDDEF
FT                 HRSTLYEANTIQRLKEKLKIFEKATKNAKVAKKIRPDESNDGKKDKQRFEA
FT                 KNKGELKRKCFNCGDTTHVVSECPKKNDGPKCFRCNEFGHVSKDCLKTEKT
FT                 IKKENKAQVNVLKVAVSEKLSVQVQLFGRKISAVVDTGSDISLMRMDLWNQ
FT                 LNCHHIQAHESNMKLRGYGGGVNSVCGKTTLSATIDGEIFDILFYIVPHDA
FT                 IDSQLLIGMEFLTTVDYAITPQGVSIKKIIQDEDDTATETKWIRRITEYVD
FT                 QEEIVVPYRHRDEVIRLIEEYEPQKNVSNKNQLTITLNDSNVVCENPRRLA
FT                 QLEKAVVRKQIDEWLNEGVIQPSQSEYASPIVVVPKKDGSYRVCVDYRELN
FT                 KKIVRDKYPMPIVEEQVDQLAEARVYTTLDLKNSYFHVPVNESSRKYTAFV
FT                 ADTGLYEFLRAPFGLCISGSGFGRFINDVLRTFIRDGTVLAFVDDIIIPSK
FT                 TEEDGLTAMKRVLEVAAKAGLMFNWKKCVFLQRRVEYLGYTIYDGKIEPAP
FT                 AKIEKLKQFPQPTTVKQLQRFYGLASYFRKFVPSFAGIARPLSELLKKDRF
FT                 IQMNDEAVSSFQLLKSILSAYPVLRIFRADGDVEVHTDASKAAIAGILMQR
FT                 ANDDDRLHPCYYFSRLTSSAEKNYHSFELEALAVVESVRKFRCYLLGRRFK
FT                 IVTDCMAFKDSVKKKKLNARIAKYVLALSEFDYDMEHRPGEKMPHVDALSR
FT                 ADIMIVSTPIVAKIRAAQKEDDRAKFIIAAFERKDPIDRFTINNGIIYEGD
FT                 GDKRRLYVPKSMELEIIRSAHEQGHFGVRKTKERINADYYIEAVDEKIKYY
FT                 IDTCVPCIIGEKKRGKPEGELQPIPKGDVPLDTLHVDHLGPMPSTKKSYGY
FT                 ILTVIDAFTKFVWLFTTKSTTAEEVVKKLQVISSTFGNPRRIISDRGSAFT
FT                 SGHFTRFCENEGVEHHTIATGIPRGNGQVERVHRIIIPMLTKLSMEKPEEW
FT                 FKHVSRVQKCLNNSWQRSINTTPFELMTGVKMRTKEDAVLHDLLSREIQDD
FT                 FTNGRNELRITAKQNIERLQEENRKYYNLRRRPVKQYLIGDLVAIPKTQYG
FT                 VGQKFKPRFYGPYEISSVLENDRYEVKKLDEEAEGPRKTITAGSCMKSWTL
FT                 PGRK"
XX
SQ   Sequence 4338 BP; 1381 A; 813 C; 1100 G; 1044 T; 0 other;
     tgggggctcg tccgggaacg agcaaaacag gataagctac agtaaacgtt gagcaacggt        60
     gaaaagatga cgacgatcga agaattgtgc gaaaacctta cgaagatcgg tctcgctcgc       120
     aagtgtgaag atctcggttt agtgacgact ggcggaaagc gcgatatggc caaaaggatt       180
     ttacatcata cgacgatggc tgcaaccgat gaaaatgacg aaaattatca tcaaaatcgt       240
     gaaccgcatg acgaagatga aaaggacgct gtgctgctgc ataacgatgg tgtgcgcgag       300
     aacgacgact cacacacaca caacgatgaa aacggcgatc gagaagatgg cggcgcgcgc       360
     gcaacatcct taaatcacga cgacgaaagg cacgatgatg atagtgttag tgagaacgac       420
     tactcacata ccgacgatga tgacagcgat gacgatgagg tattgttcca aacggcgatg       480
     agaagctcca ctccaatgac gaaaaggcgg aatttctccg gaacatcaag ggtgtattcg       540
     ttccgtgata tggaagaaag catcgacaca tttggtgcta aagaaggcga aaatgtaaga       600
     ctgtggttaa aacagctcga gatgatttca aaatctgctc ggtggaataa tgagcaaatg       660
     cttatcatgt gtcggaagaa gctgacggat acggcaaggc gttttgtttt ctctctgcga       720
     gatgcaagca agtacagcat tttgaagaaa gcattaatta aagagtttgc tcctcttgtt       780
     cgcgctagcg acattcatcg aacgttggca ggccgaaaga agaaatcatc agaaacgatg       840
     cttgactata tttatgagat gcaacgtatt gctttgccga ttgatttaga cgaaccaagt       900
     atttgtgaat atattgtgga tggtgttact gacgatgagt ttcatcgctc cacgttatat       960
     gaagcgaaca caatacaacg actaaaggaa aagcttaaaa tttttgagaa agctacgaag      1020
     aacgctaagg ttgccaaaaa aataagacca gatgaaagca atgacgggaa gaaggacaag      1080
     caacgctttg aggctaaaaa caaaggtgaa ttgaaacgta aatgtttcaa ttgtggtgac      1140
     accacgcatg ttgtttctga gtgtcctaag aaaaacgatg ggccgaaatg ttttcgttgt      1200
     aatgagttcg gacatgtttc gaaagattgt ttaaagacgg aaaaaacgat aaaaaaagag      1260
     aataaggcac aagtcaacgt actgaaagta gctgtcagtg aaaagcttag tgtacaggta      1320
     caattattcg gacggaaaat ctcagcagtt gtagatacgg gtagcgacat ttcattgatg      1380
     aggatggatt tatggaatca gctcaattgt caccatattc aggcgcatga gtcgaacatg      1440
     aagctacgag gttacggtgg cggcgtaaac tcagtgtgtg gtaaaacaac gctatctgca      1500
     acgatcgatg gagagatttt cgatattctc ttttacattg tgccacacga tgctatcgat      1560
     tcacaattgt tgatcgggat ggaatttctc actacggttg attatgctat tactcctcaa      1620
     ggtgtgagta taaaaaagat aatccaggat gaagacgata cggctacgga aacaaagtgg      1680
     atacggcgta taacagaata tgttgatcaa gaagaaatag tggttcctta caggcatcga      1740
     gatgaagtga ttcgcctgat agaagaatat gagccgcaga aaaacgtatc gaacaaaaat      1800
     cagctgacga ttaccctcaa cgattccaac gttgtttgtg agaacccccg acgattagct      1860
     cagcttgaaa aggcagtggt tcgaaagcag attgatgaat ggcttaatga aggggtcata      1920
     caaccatctc agagtgagta cgcaagccct atagttgtgg ttccgaagaa ggatggctcg      1980
     taccgcgttt gtgttgacta ccgcgagctt aataagaaga ttgttcggga taaatatccg      2040
     atgccgattg tcgaagaaca agtcgatcag ctggccgaag ctcgagttta caccactctc      2100
     gatttaaaga attcttattt tcatgtacca gtgaatgaaa gtagtagaaa gtatacggct      2160
     tttgtagcgg atactggtct gtacgaattc ttacgcgcac cattcgggtt gtgtatcagt      2220
     ggaagcggat ttggcaggtt catcaacgac gtgcttagaa cattcatccg agatggaaca      2280
     gttttagctt ttgttgacga cataattatt ccatcgaaaa ctgaagaaga cggactgacg      2340
     gcgatgaaac gtgtactaga agtggctgca aaggcgggac taatgttcaa ctggaagaag      2400
     tgcgtatttc tgcaacgacg tgtagaatac ctcgggtaca cgatttacga cggtaagata      2460
     gaaccggcac cggcgaagat tgaaaaattg aagcagtttc ctcaaccgac gaccgtgaag      2520
     caattgcaac gattctacgg gttagcaagc tattttagga agttcgtgcc ctcgttcgcg      2580
     ggtatcgctc gtcctttatc ggagttattg aagaaggatc gattcattca aatgaacgac      2640
     gaagcggtga gttctttcca acttcttaag agtattcttt cagcttaccc agtactacga      2700
     atattccgag ctgacggaga cgttgaggtg catacagatg ccagtaaggc ggcgattgct      2760
     gggattctaa tgcagcgtgc aaatgatgat gacagacttc atccctgcta ctattttagt      2820
     cgtcttacga gtagtgctga aaagaactac cattcgttcg agctagaagc actggcagta      2880
     gtagaatccg tacgaaagtt ccgatgctac ctattaggac gcaggtttaa gatcgttacc      2940
     gattgcatgg cttttaaaga ttcggttaag aagaagaagt taaacgcacg tattgcgaag      3000
     tacgttttag ctttatccga attcgactat gatatggaac atcgtccagg ggaaaagatg      3060
     ccgcacgtcg acgcactgtc tagggctgat attatgatcg tttcaactcc tattgttgcg      3120
     aagatccgag cagcacagaa agaggatgac cgagcgaagt ttatcatagc ggcgttcgag      3180
     cgaaaagatc ctattgacag attcactatc aataatggca ttatttacga aggcgacggg      3240
     gataaacgac gactttatgt gcctaagtct atggaattgg agattataag atctgctcac      3300
     gagcaaggac attttggagt ccgaaaaacc aaagaacgaa ttaacgcgga ttattacatt      3360
     gaagctgtag atgagaagat caagtattac attgacacct gtgtgccgtg tattatcggc      3420
     gaaaagaaga gaggcaagcc tgaaggtgaa ctgcaaccca ttccaaaagg tgatgtaccg      3480
     ttggatacgt tacacgtcga ccatctagga ccgatgccat caacgaagaa gtcatatggc      3540
     tatattctta cagtgatcga cgcatttaca aagtttgtgt ggttgtttac aacgaaatcg      3600
     acaactgcag aagaggtcgt taagaagcta caggtgatca gcagtacatt tggtaatccc      3660
     agacgaatta tcagcgaccg tggatcagcc ttcacgtcag gacacttcac gcgattttgt      3720
     gaaaacgaag gcgttgagca tcatacgata gctactggaa ttccacgtgg aaacggacaa      3780
     gtcgagcgtg tccatcgtat catcatcccg atgctgacaa agctatccat ggaaaaaccg      3840
     gaagaatggt ttaaacacgt atctcgggtg caaaagtgtt tgaataacag ctggcagaga      3900
     agtatcaaca cgactccttt cgaattgatg acgggtgtga aaatgcgtac gaaagaagat      3960
     gctgtacttc atgatctgtt atcacgcgag atccaagatg actttacgaa cggacgaaat      4020
     gagctacgta taacggcgaa gcaaaatatc gaaagattgc aagaagaaaa ccgaaagtac      4080
     tacaatctgc gtagaagacc agtgaaacag tatcttatcg gagatctggt ggcaatcccg      4140
     aaaacgcagt atggggttgg tcaaaagttt aaaccgcgat tttacggacc gtacgaaata      4200
     tcgagtgttt tagagaacga tcgatacgaa gtgaagaagc tagatgagga agcggaaggg      4260
     cctaggaaga cgataacagc gggaagttgt atgaagtcgt ggacacttcc gggtcggaag      4320
     tgatttcagg aaaggccg                                                    4338
//
ID   Gypsy-31_AnFu-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-161
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2844-2844 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 161 BP; 45 A; 45 C; 33 G; 38 T; 0 other;
     tgtaggacag ggctaccccc cggtcaaatg acagcaagaa tgacagctag gaggcgagaa        60
     agtcagtcga agccaggcat tcgcgcgtgt cacttcacat cacccaatac tgttccttat       120
     aataaactta tctgtaccgc tcgtattccc tttatctcac a                           161
//
ID   Gypsy-31_AnMe-I repbase;    DNA;    INV; 4427 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4427
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6843-6843 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..4414
FT                 /product="Gypsy-31_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MVEKLTVLFGKMESVLSKRFKCLNITKTRTEDLLAFT
FT                 CRVNKACVDAEFSSMTEEDFKCLILVCGLKDESVQDIRMKLLAAIEDRKNA
FT                 TLEQLAADCQRLVRVKADSAMIATDTSERVQAVQARNNRQWHRNTNNERYP
FT                 KPAPRNEASKPRTLCWLCGALHWTRDCTYRTNKCRDCGRTGHREGFCNSSQ
FT                 RRRGRPRFDHRRAVSSRVVRVNVCSVQQKRKFVSILIGEKPARLQLDTGSD
FT                 ITVINQQLWKQLGKPHLNPPKVRAKAATGEVFGLQGEFEANVSINNTTKQA
FT                 TIRVSKADVSLFGADLIHLFGLGTVPMDSYCNHIGTAEPRSWEKEFPSLFS
FT                 GTGLCTKAQIHLXLQQGSRPVFRPKRPVAYAMEDAVNKELDRLENLGIISS
FT                 CDYSDWAAPVVVVRKANGKIRLCGDYSTGLNAALHPHEYPLPLPQDIFSKL
FT                 ARCVIFSQIDLSDAFLQVEIEAKSRPLLTINTHRGLYHYNRLPPGIKVAPG
FT                 AFQQIMDKMLAGVNGVSAYMDDVIVGGKTQEEHDAALEETLKRIRDYGFTI
FT                 RSEKCAFNKSEIRYLGHIIDSRGLRPDPAKIDAIKNLPAPKDVTGVRSFIG
FT                 AINFYAKFIPNMRNLRYPLDKLLLAGSVFQWTPECQKAFDQFKALLSTELL
FT                 LTHYDPTRDIVVSADASSVGLGATLCHKYPDGSLKVVQHASRALSKAEIGY
FT                 SQIDREGLAIIFAVTKFHRMIYGRHFTLQTDHRPLVRIFGSKKGIPTYTAN
FT                 RLQRFALTLQLYDMDIEYVATGSFGNADVLSRLIHHHAKPEAEYVIASLEL
FT                 ENDLRSVAINALSSFPLCFRDVETATQTDPLLRKVHKYVQDGWPHDVSFGA
FT                 DLARYHNRKESLSTVEGCILFGERVVIPEKLRSRCLLQLHKGHPGMQRMKA
FT                 IARSYLYWPMIDDDIVSYVASCGSCLAAAKAPPRATPATWPTPSGAWRRVH
FT                 VDYAGPLEGYYFLVVVDAFSKWPEIYKTTSTTTSATISMLRNIFARFGMPE
FT                 TLVSDNGPQFTSALFAEFCNSSGIEHITTAPFHPQSNGQAERFVDTLKRAL
FT                 RKIQSDETSLDEALELFLMTYRSTPNAQLSQQKSPAEEMFGRPIRTALELL
FT                 RPPSSHSLSPSSFISVRSFQPGDLVSTKSFYRNSWKWIPGKIVRSCGRVMY
FT                 DVIASDGRLLRRHINQIRRRAVARAPEGHQLPLDVLLEEWSSSSSRPEPTQ
FT                 PELEPIVSEPTALSRSSPAYSSLAATTPMDVPLTTSSSLPPADLDNRHGGR
FT                 TDQRLIDLPRRSSRVRRLPRRLGAYQLI"
XX
SQ   Sequence 4427 BP; 1193 A; 1144 C; 1110 G; 979 T; 1 other;
     gtggcgacga gtttaagtgg aaacggtcaa cgacaagtag ggaaacgccg cagaatgtcc        60
     agcccagaag agacgccgat catcgaggag caacgtcgtc tctcacaaaa tggggtcctg       120
     aacacagggt tcattcaccc ccagccaccg cagcacacgc catcggattc atcgccgctg       180
     cagcaaacgc tgcagctttt acaacagcaa ttggcccaac agcagcagca aatggcacag       240
     caacagcaac tgttatcgca gctcgtgcaa caacaacagc agcagcagcc accgaccccc       300
     gatctgcaat ttgtgccaaa accgagcaac ccggagttga tactggaagc cctcgccggt       360
     aatattagtg agttccggta cgatccagaa gcgggagtaa catgtagatt tgtttcgtga       420
     agatgcttcc cgcttggatg acgccgccaa ggttcgactc ctgggacgta agcttggaac       480
     cgctgaacac gcccggttta gtaattttat tttaccgcgt gcaccgcgag atttcagctt       540
     caacgaaatg gtggaaaagc ttaccgtcct gttcggcaaa atggagtcgg tgttaagcaa       600
     acgcttcaag tgtcttaata ttaccaaaac gcgcaccgag gatctgctag catttacctg       660
     tcgagttaat aaagcgtgcg tcgatgcaga attttcttcg atgacggagg aagattttaa       720
     gtgcctcatc ctcgtatgcg gattaaagga cgaaagcgta caggacataa gaatgaaact       780
     gttagccgcc attgaagaca ggaagaacgc caccctagag cagctagcag cagattgtca       840
     acgtttagtg cgtgtaaaag ctgatagcgc tatgatcgct acggacacta gtgagcgagt       900
     acaggcagtg caagccagaa acaaccgcca gtggcatcga aacaccaaca acgagcgcta       960
     ccccaaacca gcaccccgaa acgaagcctc caaaccccgc accctgtgct ggctttgtgg      1020
     tgctctgcat tggacccggg actgcaccta cagaaccaac aagtgccgag attgtggacg      1080
     tacaggtcat cgagagggtt tctgcaactc gtcacaacgg cgcagaggac gaccgcgatt      1140
     cgatcatcgc cgtgcagtgt catcgcgagt agtacgtgtc aacgtatgca gcgtgcagca      1200
     gaagcggaaa tttgtcagca tactcatcgg agagaagcca gctcgactac agctagacac      1260
     cggatcggac atcactgtca ttaaccagca actatggaag cagttgggta agcctcacct      1320
     caacccaccc aaggtaagag cgaaagcagc tactggtgaa gttttcggcc ttcaaggtga      1380
     gtttgaagcg aacgtgagca ttaataatac caccaagcaa gcgacaattc gcgtgtcaaa      1440
     agcggatgtg tcattgttcg gggctgattt aattcatctt ttcggcttgg ggaccgtccc      1500
     gatggatagc tattgcaatc acataggcac agctgaacca cgatcctggg agaaagaatt      1560
     tccttcgctt tttagtggaa cgggcctgtg caccaaggca caaattcacc tasagctgca      1620
     acaagggagc agaccagttt ttcgaccgaa acgtccggtt gcatacgcga tggaagatgc      1680
     tgtaaataaa gagttggatc ggcttgagaa tctaggcatc atcagttcct gcgactattc      1740
     ggattgggca gcaccagtcg tagtggttcg aaaggcgaac ggcaaaatac ggctttgcgg      1800
     agactatagc accggactca atgcagcatt acacccgcac gaatatccgc ttcctttacc      1860
     ccaggacatt ttttctaagc tagcccgttg cgtaatattt tcacaaattg atttatccga      1920
     tgcatttttg caggtagaaa tagaagcaaa gagccgaccc ctgctgacaa ttaatacgca      1980
     tcgtggtcta taccattaca acaggcttcc tccaggcata aaagtggccc ctggtgcttt      2040
     tcagcagata atggataaaa tgctcgccgg ggtaaatgga gtatctgctt acatggatga      2100
     cgtaatagtt ggagggaaaa cacaggaaga gcatgatgca gctcttgaag aaacgctgaa      2160
     gcgcataagg gactatgggt ttaccatccg gagtgaaaag tgcgcattca acaagtcgga      2220
     aatacgctac ttggggcata tcatcgacag ccgaggccta cgacccgacc cggcaaagat      2280
     cgacgccatc aaaaatttgc cagctccaaa agatgtaaca ggcgttcgat cattcatcgg      2340
     tgcgataaat ttttatgcca agtttatccc caacatgcgt aacttgcgct acccattgga      2400
     taagttgctg ctagccggaa gtgtgttcca gtggacaccc gaatgtcaga aagcttttga      2460
     ccaatttaaa gccctcttgt ccacggagct cttgctcaca cactacgatc caacgcgcga      2520
     catagttgtg tccgccgatg catcatcagt tggcttagga gcaacgctat gccacaagta      2580
     cccagacgga tccctaaaag tggtacaaca cgcatccaga gcactcagca aggcggagat      2640
     tggttatagc caaatcgaca gagaaggact ggcaataatt ttcgctgtaa ccaaatttca      2700
     tcgcatgata tacggtcgtc atttcacact gcagaccgac caccgaccat tggtacgcat      2760
     atttggcagt aagaaaggaa ttccgacata cacagcaaac cggctgcaga ggtttgcact      2820
     aactcttcag ctgtatgaca tggacatcga gtatgtagca acaggctcat ttggaaacgc      2880
     cgatgtgtta tctcggctca tacatcatca cgccaaacct gaagctgaat acgtcatcgc      2940
     cagcctggag ttagaaaacg acttaaggtc agttgccatt aatgcgctta gctcatttcc      3000
     tttatgtttt agagacgttg agacagctac gcagactgac cccttgctcc ggaaagtcca      3060
     taagtacgtg caggacggtt ggccgcatga tgtttcattc ggagcagatt tggcacggta      3120
     ccacaatagg aaagaatcgc tctcaaccgt tgaggggtgt atacttttcg gggagagagt      3180
     ggtcatcccg gagaaactgc gttcccgttg tttgctgcag ctgcacaagg gtcatccggg      3240
     gatgcagaga atgaaggcga ttgcgagaag ctacctgtat tggccaatga tcgacgacga      3300
     tattgtgagc tacgtggcat cttgtggatc ctgtttggca gccgctaaag caccccctcg      3360
     agcaacacct gcgacatggc caacaccatc gggcgcctgg cgtagagtac acgtggacta      3420
     tgctgggcca ctggaagggt attacttttt agtggtggtt gacgctttct ccaagtggcc      3480
     tgaaatctac aaaactacga gtacaacaac atctgccacc atctccatgt tacggaacat      3540
     tttcgctcgc ttcggtatgc ctgaaacgtt agttagcgac aacggtccgc aatttaccag      3600
     cgccttgttt gcggagtttt gcaacagcag cgggatcgag cacatcacga cagcaccgtt      3660
     ccatccgcaa tcaaatggac aggcggagcg gttcgtcgat acgctgaaac gagcactgcg      3720
     gaagatccag agcgacgaga cgtcccttga tgaggccctg gaattgtttc tcatgacgta      3780
     ccgatcgaca ccaaacgcgc agttgagcca gcagaaatct ccagctgagg aaatgttcgg      3840
     ccgccccatc aggacagcac tggagctgtt gcggccccca tcatcacact cactatctcc      3900
     ttcctcattt atttcagtgc gaagttttca acctggcgat ctcgtttcta caaaatcttt      3960
     ctatagaaac tcatggaagt ggataccggg aaagatcgtt cgtagctgtg gacgcgttat      4020
     gtatgacgtc attgcgagtg atggacgttt acttcggcgc cacataaacc aaatcaggcg      4080
     tcgtgcggta gcccgtgcac ctgagggaca tcagctgccg cttgatgtac tgttagagga      4140
     atggtcttct tcttcttccc gaccagagcc aacccagccg gagctggaac caatcgtaag      4200
     cgagccaaca gcgctttcac ggtcatcgcc cgcttattca tcactagcag cgacgacccc      4260
     gatggatgtt cctttgacga catccagctc gctacctcct gccgacctcg acaaccgtca      4320
     cggaggtagg accgaccagc gcctgataga tttgccacgc aggtcttctc gagtaagaag      4380
     acttccgcgt cggctcggag cctatcagct catttagccg ggggaga                    4427
//
ID   Gypsy-31_AnMe-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-288
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6868-6868 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 288 BP; 69 A; 71 C; 57 G; 91 T; 0 other;
     tgttgcagtc cgccgagact gcagcctctt cgcacactcg atgctttccg ggaactgaca        60
     gcattcgatg tgtagcgaat atagtcgtct ctttctctct ctctctctct cgtgcatgat       120
     ccattacgat cggggatcct gcgatgtaac gaacactcgg gatcttatct gcaccagcaa       180
     tagacgtggc tagcgcgcgc ggcaccgtat tcctttttct tttatcattt gatcgttttt       240
     tatatatatg tttgttaaaa taaagtataa gtcaacaaca acataaaa                    288
//
ID   Gypsy-31_CQ-I repbase;    DNA;    INV; 5436 BP.
XX
AC   AAWU01031725;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_CQ_;
KW   Gypsy-31_CQ-LTR; Gypsy-31_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5436
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 441-441 (2011).
XX
DR   Genome; AAWU01031725; Positions   18641   24076.
XX
CC   Positions [4430-4891] - Integrase core
CC   'CCCAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1813
FT                 /product="Gypsy-31_CQ-I_1p"
FT                 /translation="MMNHNIQPFVVGETATVGKRWKSWRRSFDLYMACCGT
FT                 VTDEKKKAMFLHLAGPEVQEIFYDDPDHDAALPNGSDVFKEAVNLLDKHFE
FT                 PVVCIPHERVLFRRMKQEGSDGIEQFARKLRHQGNLCDYGGALDMRITEQI
FT                 FDGSTSDALREAILKKRLVALKDILEEGRILETIELNKQEAVASTSNGPAA
FT                 VNKVDSGKCFRCGSLEHFANSKKCPALKKKCDKCGLVGHFKLQCRTKSHTA
FT                 KTKKKKVRQVDSSDEEDSDEDKVSDADSENSEVLHIFSTTMKQNEVVRESS
FT                 KYNTKISCSVGGVKLKWTVDSGASVNVIDEGTWELLKKKGCKVSYENNETR
FT                 KKLMAYGNNRLDVKGVFKADISHGPKTVHREIYVIRGHGANLLGKTTSIDL
FT                 GVLQIKSEVSQVQESKTPAFGKAKGVSIVVELDQQVRPVQQPCRRLPIPLQ
FT                 AVVEAELQKLLDQDVIEYAPNKVTWSSPLVVTPKDGGRKVRLCVDMRRANT
FT                 AIVPQRYPLPTFDEIMPYLDLKDRPHASISSAGTTSGFSGNNHIRHAEGLL
FT                 SL"
FT   CDS           3797..5434
FT                 /product="Gypsy-31_CQ-I_2p"
FT                 /translation="MYLRGKFFVVLTDHKPLVKIFATESDPNERQQRWVLN
FT                 LMGYRFLVRHVPGKANIADPLSRLAQSEEAQNCDKDCEKDLCAVVESALPA
FT                 TLTMTELIQAAEEDAETFMLRKAIRTGTWGDDMKRYRPFQNELCYANQVVL
FT                 RRNKIVVPQSLRERVLDLAHGGHPGSSKMKRRLRAAVWWPGIDQDVDKRCK
FT                 QCLECQAVRSGPSPEPLCIQEMPSKPRSHLSADFLGPLPNGKYLFVLIDAY
FT                 SRYCVVEVMTKITSVLVIQRLERIFTRLGLPDILKTDNATNFCSQEFKDYC
FT                 VDSGIKLTHTTPYWPAANGEVERQNRSILKALKIGQLNGENLEKALQDYLY
FT                 MYTVTPHAVTGVSPAELMFGRRFKDRFPHLSGEVVVPEEVQERDRIAKYQA
FT                 KVYRDIKVHAKPSDIQIGDHVLMKNQHRDNKLAPNFNPEPVVVVQKAGNCV
FT                 TVRTPRGDLFRRNSSHLKPIRSSIGPAEQANEPDVDGETLAEADFDAEYPV
FT                 AANDRAATPGIGQGGVRFNVLSGLSNPQLDSRTTSWEKSRESNLTVTKGE"
XX
SQ   Sequence 5436 BP; 1599 A; 1150 C; 1446 G; 1241 T; 0 other;
     ttttggcgac gattcgggaa atttaccggg agaacgcgcg gaaaagatcg cgaaagtacc        60
     gtttttgtga aaaaccgtgc gaagggaagt agttcggcta gcagaaaacg ggaaattgaa       120
     cgaattttga gcgtcgcgtg tgtgagcatc gaagtgtgcg agggagatga tgaatcacaa       180
     tattcaacct tttgtggttg gagaaaccgc gacagtggga aagagatgga aatcttggcg       240
     aaggtcattt gatctttaca tggcgtgctg cggcacggtg actgatgaga agaagaaggc       300
     gatgtttttg cacctcgccg ggccggaagt gcaagaaatt ttctacgatg acccggacca       360
     tgatgctgca cttccgaatg gatcggatgt tttcaaagag gcggtcaatt tgctggataa       420
     gcatttcgaa ccagtggttt gcatccctca tgaaagagta ttgttccgac gcatgaaaca       480
     agaaggcagt gacgggattg agcagtttgc gagaaagttg cgtcatcaag ggaacttgtg       540
     tgactacgga ggtgctctgg acatgcgaat cacggaacag atcttcgacg gctcgacgtc       600
     ggatgctctt cgagaggcga ttttgaagaa gcggctggtg gcgctgaagg acatcctgga       660
     ggaaggaagg atcttggaaa cgattgagct gaataagcag gaggctgtcg cttcgacgtc       720
     gaacggacct gcagcagtga acaaagtgga tagtggaaag tgtttccgat gtggctctct       780
     ggaacatttt gcgaactcca agaagtgccc agctctcaag aagaaatgcg acaaatgtgg       840
     acttgttgga catttcaagc tacaatgtcg cacgaagagc cacaccgcga aaacgaagaa       900
     gaagaaagtg cgacaagtgg atagttccga cgaagaagat tcggacgaag acaaagtcag       960
     cgatgccgac agtgagaaca gtgaagtgct ccatattttc tctacaacga tgaagcaaaa      1020
     tgaagtagta agggagagct cgaagtacaa cacgaagatt tcgtgttcgg tgggaggagt      1080
     aaagctgaag tggacggtgg actccggagc gtcagtcaac gtaatcgacg aaggcacttg      1140
     ggaattgctg aagaagaaag gttgtaaagt gagctacgag aacaacgaaa cccgcaagaa      1200
     gctgatggcg tacggcaaca atcggctgga cgtaaagggt gttttcaagg cggacatctc      1260
     gcacgggcct aagactgtac atcgggaaat ctacgtaatt cgtggtcacg gagctaatct      1320
     gttgggaaaa acgacctcga tagatttggg cgtgttgcag atcaagtctg aagtttcgca      1380
     ggtgcaagaa agcaaaacac cagctttcgg aaaagctaaa ggcgtgtcca tcgtcgtcga      1440
     gttggatcag caagttcgcc ctgtacagca gccctgccgc agattgccga ttcctttgca      1500
     agccgtcgtc gaagcggagc tgcagaagct cctggaccag gatgtgatcg agtatgcgcc      1560
     gaacaaggtc acttggtcat ctccgcttgt cgtgacgccg aaggacggag gtcgtaaagt      1620
     aaggctctgc gtggacatgc gacgcgctaa cactgctatc gtcccgcaaa gatatcctct      1680
     cccgacattc gatgaaatca tgccctacct cgatctcaaa gatcgacctc acgcaagcat      1740
     ttcatcagct ggaactacat ccggattctc gggaaataac cacattcgtc acgccgaagg      1800
     cttactttcg ctttaagcga ctgatgtttg ggatgagcat cgcatcggag gttttccaac      1860
     gagagctcgg aaacatgctg aaagggctcg agggggtaaa gcacttcatc gacgatattt      1920
     tggtctttgg ccgaactcga gaagagcacg accgccggct ggcggcgttg atgaagcgga      1980
     tcgaggagtg cggactaaca gtgaacaagc tgaagtgtca gattggtcag acgaaggtct      2040
     cattcatggg acatctgctg tcgagtgacg gaatactgcc aatggaagag aaggttagtg      2100
     caatcaagtc attccggcga ccggagtcag ccgaagagat tcggagtttc cttggtttgg      2160
     cgaactacgt cggaaaattt atcccgaatc tttcctcgat cagcactccg ctgagggaca      2220
     tgacggtgaa gggggccaac ccaagtagca agaaaaacat cgctttttat ttttttgttg      2280
     aacaattgct gcataagcgt tttaatacgc taattattga acaagtgtca taacaattgg      2340
     taaattgttc aaattttgat caaaaaacca ttgttaaaca tggttgtgta acataaatgc      2400
     taaatctagc aacggattac gaaaagttca tttttgaagt ttattctgac ttaaatgaaa      2460
     catgcttgta gaactcggag agcaaaatga catttgtaaa catgatgttt catttcagtt      2520
     tgctaaacat gataacatag atgaattgac ctttggcttc ggctgggatt tctcgtaaac      2580
     aagttgttta tgtatagttt gccttcgtgt tttaaaaacc gagaaagaac atgttgacga      2640
     aacaagcaca gatagttcta aaaatagaaa cagcttatgt tcaaaggaag ttttagcaaa      2700
     ctgttagtga acttggtaaa agctagatga ccgcagactt ctaattgacg tttaggcctg      2760
     ctcatccaat ataacccctc gtggaaagat gcagacgcgc gcccggactt gacatttgga      2820
     gtgatcgagg gttcaatact tgccgtgagg attcttcatc aaaaaggaaa actgaaaatg      2880
     cagccaccgg gggaaccagc agcagagtag cagcaagcga tgttgattag tactcaaaaa      2940
     ttgaaaaaaa ttatctccaa aagcaaaata atgaaattga atgatttttt tttttgttga      3000
     tatttttatt attcatcgta tccctgtaaa aactgataaa tcacaaaact agtaattaaa      3060
     gtattgtaaa gtgacattac tcacaaataa agtttaaaat aaagaaaaat atatttaaag      3120
     cgaaaacttg ggacgtatat tatgaaaagc ctctttaaat tttttgtctg ccacgacatg      3180
     ttcttggacg gttctcaaaa ggttttccta actcgcttct gaatcttaaa ggcaggatgt      3240
     tgttaaacgg ttctaacaac gttcacctga cccaattcag aatcttatag tcaagagttc      3300
     ttatgacatg tttaacaaac gttctctatg caaagatgat ttgcatttgc aaaactaact      3360
     taaaccacgc acatttctga cggatgaaga gatgttcaac aacagaaaaa cgtgcgcttt      3420
     ttccagcgtt caagagtcct tagggacgtt gggaaaacat agtaaacgag ttcaacaagc      3480
     agttcggaaa tctcttggcg aataaagtgt gctacttggg aagttcaagt ggacgaaaca      3540
     agccggaaaa gcgttcacgt ccattaaaag ttctctgtca aacccgcagc acctgggatt      3600
     ctacagtccg gaaagtgaaa caaccctggt ggtagatgca agtgccacgg gactgggtgc      3660
     tgttctcctg cagacggaca acggtcagcg aagggtgata agttacgcga gcaaaagctt      3720
     gtcgaagacc gagcgcaggt actctgtttt ggataaggaa gcgttggcga tttactgggc      3780
     gatcggcaga ttcgacatgt acctgcgggg aaagtttttc gtagtgctga ctgatcacaa      3840
     gccgctggtc aagattttcg ctaccgaatc agatccgaac gaacgacagc agcgctgggt      3900
     gttgaacctg atggggtacc gtttcctagt acgacacgtt cctggaaaag cgaacatcgc      3960
     tgaccctttg tcgcgactcg ctcaaagcga ggaggcacaa aactgcgaca aggactgcga      4020
     aaaggatctg tgcgccgtgg tcgaaagtgc gttgccagca actctgacaa tgacggagtt      4080
     gatccaagcg gcggaagaag atgctgaaac gttcatgctg cgtaaggcga taagaacagg      4140
     aacctggggt gacgacatga agcggtaccg tccattccaa aacgaactct gctacgccaa      4200
     ccaggtggtt ctacggcgca acaagatcgt cgttccgcaa agtcttcggg aaagagtttt      4260
     ggatctagca catggtggtc acccgggtag cagcaaaatg aaacgtcgac tgagagctgc      4320
     ggtttggtgg cctgggatcg atcaagacgt tgacaaacgt tgcaagcagt gcctggagtg      4380
     tcaagcagtt cggagcggac caagtcctga accgttgtgt atccaagaaa tgccatcaaa      4440
     gccgcggagt catttgagcg ctgacttcct cggtccacta ccaaacggca agtacctgtt      4500
     cgtcctgatt gatgcctaca gtcgctactg tgtggtggaa gtaatgacca agatcacttc      4560
     agttttggtc atccagcgcc ttgagcgaat tttcactcgg ctcgggctgc cggacatttt      4620
     gaagacggac aacgcaacca acttttgcag ccaggagttc aaggattact gtgtggacag      4680
     cggtatcaaa ctcacccaca caacaccgta ctggccagct gcgaacggtg aagtggagag      4740
     acagaatcga tccatactga aggcgctgaa aatcggacaa ttgaacggcg agaacctgga      4800
     aaaggcgcta caagattacc tgtacatgta cacggtaact ccacacgctg tgaccggcgt      4860
     ttccccagcg gagttgatgt ttggaaggcg cttcaaggac agattcccgc acctttcggg      4920
     agaagtcgta gttccggagg aggttcaaga acgcgatcgg atcgcaaagt accaggccaa      4980
     ggtgtaccgg gacatcaagg tgcacgctaa accatcggac atccaaattg gcgaccacgt      5040
     cttgatgaag aaccagcacc gagacaacaa gttagcccca aatttcaacc cggaaccggt      5100
     ggtagtggta caaaaggcgg gaaattgcgt gacggttaga acaccccgag gtgatctgtt      5160
     ccgacgaaac tcttcgcacc tgaaacccat cagaagcagc attggaccag ctgaacaagc      5220
     gaatgaaccg gacgtcgatg gtgaaacgtt ggcagaagcc gacttcgacg cagagtaccc      5280
     ggtagcagcg aacgatcgag cggcaacccc agggattggt caaggaggag tgcgtttcaa      5340
     cgtcctaagc ggattatcaa acccccagct agattccagg actacgagtt gggagaagag      5400
     tagagaaagt aacttaactg tgacgaaggg agaaga                                5436
//
ID   Gypsy-31_CQ-LTR repbase;    DNA;    INV; 134 BP.
XX
AC   AAWU01031725;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_CQ_;
KW   Gypsy-31_CQ-I; Gypsy-31_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-134
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 442-442 (2011).
XX
DR   Genome; AAWU01031725; Positions   18507   18640.
XX
SQ   Sequence 134 BP; 39 A; 20 C; 37 G; 38 T; 0 other;
     tgtagtgttt tgtctgtaca aatatctggc aacactgtaa tcggtggagg gagagaagaa        60
     ctgtcagagg agggagccat tataataaag atcttgtgag agtacgcacg tgtctcgggt       120
     ataattcttc taca                                                         134
//
ID   Gypsy-31_DAn-I repbase;    DNA;    INV; 5350 BP.
XX
AC   AAPP01015519;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DAn_;
KW   Gypsy-31_DAn-LTR; Gypsy-31_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5350
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015519; Positions   56912   51563.
XX
CC   Positions [4413-4907] - Integrase core
CC   'TAGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           694..2142
FT                 /product="Gypsy-31_DAn-I_1p"
FT                 /translation="MNPAEAEKGAATPVKVPVCTLCNKEMATGRARTKCGH
FT                 EFHKACITTHAKSKLSCPTCKVVCFEKAQAASDTTGASTSQLTRRADSPCG
FT                 ASQASSQAESAGSTAELSSIVSQSISAMQATLLEQLSAQMDRLFHQRAQAE
FT                 REGEEGTGSYEQPSGVYGDEREIRDQGDYLGNGVRQPADHNFGYRPEKVGQ
FT                 ILNSWKIRFSGHPDGMTIDNFIYRVEALTHQTLDSNFSALCGNASLLFDGK
FT                 AGEFYWRFHKLNRGMRWNDLCDALRKHFRDDRSDEDIREAIRDRKQRDRED
FT                 FDTFYEAVEQLMDGLSVPLSDATLVEMVRRNLRSEIRHELLNVSIRSISHL
FT                 REICRRRERFLEEVRRDCGTSKPGWGKKPYGETQRREDRSSHRSYNKSVAE
FT                 VGSDVEWEEAQEFSGDEAGEVEAVALICWNCRKEGHRYHDCAGKRKVFCFG
FT                 CGAPNVYKPSCPKCLKNGRANALDRPSQRVPSGVNKDK"
FT   CDS           2067..5276
FT                 /product="Gypsy-31_DAn-I_2p"
FT                 /translation="MSKKRKSECAGSSISARSVRCEQGQVGRELSEECNKA
FT                 KVESKNRSRNTNRLRQYWQSMKTVETIRYKVSDKRPFAEVRLLGEEVLGLL
FT                 DTGAAVSCIGGSFARKVIRSGVDFKRKGTIVSTADGQRQQVVGHLTTEVGF
FT                 KDRCKTHMFYLVPTLSQDLYLGIDFWRSFELLPSEFRVGEISVSQELSEEQ
FT                 KVSLKAVVELFPSFAKLGLGKTHLISHSIDVGDTKAVKQRHYPVSPAVEKL
FT                 LYGEVDRMMRLGVIEESQSAWSSPVVLVQKPGKVRLCLDCRKVNSFTQGDA
FT                 YPLPQIDAILSRLPRAMFISSLDLKDAYWQIPLDPASRDKTAFTVPGKPLY
FT                 QFKVMPFGLMNASQTMTRLMDKVIPASLRNEVFVYLDDLLVVSDTFESHLA
FT                 VLTTVAGHIQKAGLTLNIEKSHFCMRSVKYLGHVIGEGVIRTDPEKIEAMV
FT                 NYPVPRTLKALRSFLGMTGWYSKFISNYADIAAPLTDLVRPKCRFTMSQAG
FT                 LEAFTKLKEAMCQAPVLHSPDFTKPFYIHCDASSYGIGGVLVQKTEGDKGD
FT                 EYPIAFVSKKLSKAQRNYSVTEQECLAAIICIKRFRPYVEGHKFTVITDHA
FT                 SLGWLMAQPDLRSRLGRWAAKLQAYKFHIEHRKGKLHVVPDALSRAYEGAS
FT                 DEEIVAEVGMDYESPHFEAEEYKTLRETVEANGETVPDLKVMDGKVFRRTK
FT                 QVRGLELAENFAWKLWVPKGMIPEILREAHDSPTAAHGGVRKTLERVRQMY
FT                 YWPGLANEVKEYVGKCEVCKMNKVPNQVMRPAMGRPAETQRFFQRIYVDFL
FT                 GPYPRSKSGNIGLFIALDHYTKFVFLKAVKKLSADVVVKYMKQELFHTYGV
FT                 PETVFSDNGTQFKGEAFRTLMRENRVTQVFTAVHSPQANASERVNRSVIAA
FT                 IRSYVNADQRNWDEHLSEICCALRTSIHSGTGESPYYLVFGQQFVGSGGTY
FT                 KLMRELGIMEDREIRLSKEDSLEVARAQAQKALARQTEKNERLYNVRSREV
FT                 SYREGQEIFRRNFKQSNFAVGYNAKLGPRYIKARVRRRTGRATYELEDMQG
FT                 RAIGTYHAKDLKQ"
XX
SQ   Sequence 5350 BP; 1487 A; 1081 C; 1636 G; 1146 T; 0 other;
     gttataatta tcttaatcat aaatttatct ggcgcccatc taagtggcca tgtttttagc        60
     atggttagac gcagccatgt tttgcggaca agttttttcg gctggttaca gtggcatggc       120
     agtaaccaga ccaaaaccct caacagtggc gcgggtaccg ctcggaattc tacactcaga       180
     ggagagagta gaccacagtg cctcgcaacc acagcaatag tttcgtgtag agtttagcag       240
     gacggattct cgcaggactt tagcagggga taggacccag ctgaccacga gtttcggata       300
     gcaggctgct acaataacga agggacggga aagacagtgc cacagttgtt tggaaaagca       360
     gtatcagcta gcggactgat atctgaccaa gcctgtagat tggcagctaa atcccgtcat       420
     cccctaggag agcagaagga cgcttggagt tcattcgtaa caggcacgaa atgaccacgt       480
     caaaagggtt tcagcttata gagctggaaa ggggagtttt ctacgagcga aattccagaa       540
     cggaattagg tgagaagcaa tggcgaaaag aagaagaacg ttaggcagcg tgcatggcgg       600
     taggcaggct aaagacgaag gcgaagttca gttttagagt ttcggtattt gtgaagcgag       660
     cattttttag ggtaggcaag aaagaaagaa aggatgaacc cggcagaggc agagaagggg       720
     gcagcgacac ctgtgaaggt gcccgtctgc acattatgta ataaagagat ggcaaccggc       780
     agagccagaa ccaagtgcgg acacgagttc cacaaagcgt gtataacaac acacgccaaa       840
     tcgaagttgt catgcccgac gtgcaaggta gtgtgtttcg agaaagcaca ggcggccagc       900
     gatacgactg gcgcgagcac gagtcagctg actcgcagag cagattcacc ctgtggggcc       960
     agccaagcga gctctcaagc agagtcggca ggaagcacag cggagttaag ttcgattgtg      1020
     tcccaatcaa tcagcgccat gcaggcgacg ctgctggaac aactgtcagc gcaaatggac      1080
     agactgttcc accaaagggc gcaagcagag agggaaggag aagagggaac tggaagctac      1140
     gagcagccta gtggggtcta cggtgatgaa agagagatcc gggatcaggg cgactactta      1200
     ggaaatggcg tgaggcaacc ggctgatcac aactttgggt atagaccaga gaaagtgggt      1260
     cagatcctga atagttggaa gattcgtttt agcggtcatc ccgacggcat gaccatcgat      1320
     aatttcatct atcgggttga agctttgacg caccagacgc tggatagtaa cttttcagca      1380
     ctatgcggaa atgcgagttt gttatttgat gggaaagcgg gagaatttta ctggcgtttt      1440
     cacaagttga atagaggaat gaggtggaat gacctatgcg acgcgctcag gaaacacttt      1500
     agggacgata ggtcggatga ggacataaga gaggcaataa gagatcggaa gcagcgcgac      1560
     agagaagatt ttgacacgtt ttatgaggca gtagaacagc tgatggatgg tctgagcgtt      1620
     ccattaagcg atgccacgct agtggagatg gtaaggagga atctcaggtc cgagatccgc      1680
     cacgagctgt tgaatgtgtc gatacgttcg ataagccact tacgggagat ttgtcggcgc      1740
     cgggaacgat tcttagagga ggtgcgacga gactgcggca catccaagcc aggatggggg      1800
     aagaagccgt atggggaaac ccagagacgg gaagacagaa gctcacacag aagttacaac      1860
     aaatcggtag cggaagtagg aagcgacgtg gaatgggaag aggcccaaga attctcaggt      1920
     gatgaagcgg gtgaagtgga ggcagtggct cttatctgct ggaattgcag gaaagagggt      1980
     cacaggtacc acgactgcgc gggcaagcgg aaagttttct gttttgggtg cggagcacca      2040
     aatgtctaca agccatcgtg tccgaaatgt ctaaaaaacg gaagagcgaa tgcgctggat      2100
     cgtccatctc agcgcgttcc gtcaggtgtg aacaaggaca agtaggaaga gagctcagtg      2160
     aagagtgtaa taaagctaag gtagagagta agaataggtc aaggaacact aataggttaa      2220
     ggcagtattg gcagtcaatg aagacggttg aaacgataag gtataaggtc tcagataaac      2280
     gtcctttcgc cgaagtcaga ttgttaggtg aggaagtact aggactattg gatactggtg      2340
     cggcagttag ctgtatcgga gggagtttcg cgaggaaggt cataagaagc ggggtcgact      2400
     tcaagcgcaa aggaacgatc gtaagcacgg ccgatgggca acgacagcag gtggtaggcc      2460
     atttaacgac tgaggtaggg ttcaaagatc gatgcaagac gcacatgttc tacctggttc      2520
     ccactctgag ccaggatttg tatttaggta tcgatttctg gaggagtttc gagctgttgc      2580
     catcggagtt ccgagtcggc gaaatctccg ttagtcagga gttgtctgaa gaacagaaag      2640
     ttagtctaaa ggcagtggta gagctatttc catctttcgc caagttagga ttgggcaaaa      2700
     cgcatttaat cagccacagt atcgatgtcg gggacacgaa agcggtcaag cagaggcact      2760
     atccggtctc tccagcggta gagaaactgc tctacggaga ggtcgatagg atgatgagat      2820
     tgggagtgat cgaggagtcg caaagtgcct ggtcgtcgcc ggtggtattg gtacagaagc      2880
     caggaaaggt tcggctatgt ctggactgca ggaaggtgaa tagtttcacc cagggcgacg      2940
     cctatccact tccacagatt gatgcgatcc tgagtagact tcccagagcg atgttcatct      3000
     ctagtctgga tctgaaggat gcgtactggc aaatcccgct ggatccggct tcacgcgaca      3060
     agaccgcgtt tacggttcca gggaagccat tgtaccagtt taaagttatg cctttcgggc      3120
     taatgaatgc atcgcagact atgactcgcc tcatggacaa agtgattccg gcctcgttgc      3180
     gtaatgaggt gttcgtatat ttggatgacc tgctggtcgt ctccgacacc tttgagtcgc      3240
     atctggcggt tctgacgacg gtggctgggc acattcagaa agcagggcta actctgaaca      3300
     tcgagaagag ccacttttgc atgcgttcgg ttaagtattt gggccatgtg atcggagaag      3360
     gcgtcataag gacagacccc gagaagatag aggcgatggt aaattacccg gttccacgga      3420
     cgctaaaggc gttacggagt tttctgggca tgactggatg gtacagcaaa ttcataagca      3480
     attatgcaga catagcggca ccattgacgg atctggtgag gcccaagtgt cgtttcacga      3540
     tgtcgcaggc tggcctagag gctttcacaa agcttaagga agcgatgtgt caggctccgg      3600
     ttctgcacag tccggatttt acgaagccgt tctacattca ctgcgatgcg agcagttatg      3660
     ggattggtgg cgtcctggtt cagaagacgg aaggggacaa gggtgacgaa tatccaatcg      3720
     cttttgtctc aaagaagttg agcaaggccc aaaggaatta ctccgtcacg gaacaggaat      3780
     gcctggccgc gattatttgt attaaacggt ttagacctta cgtagaaggg cataagttca      3840
     cggtcatcac agatcacgcg tcgctaggat ggctcatggc acagccggat ttgagatctc      3900
     ggttggggcg atgggcggcg aaattgcagg cctacaagtt ccatattgag catcggaagg      3960
     gcaaactgca cgtggttccg gatgcgctgt ctagggcata tgaaggagcg tcagatgagg      4020
     agatagttgc ggaggtagga atggattatg aatccccaca tttcgaggcg gaggagtaca      4080
     agacccttcg ggagacggtc gaagccaatg gcgagacggt accagatctg aaggtcatgg      4140
     atggcaaggt cttccgacgg acgaagcaag tccggggttt agagctagcg gagaatttcg      4200
     catggaagtt atgggtgcca aaggggatga ttccagagat attaagagag gcccatgaca      4260
     gtcccacagc agcgcacgga ggtgtccgta aaacgctaga gagagttcgt caaatgtact      4320
     actggccagg cttagccaat gaggtgaagg agtacgtagg caagtgcgag gtctgtaaga      4380
     tgaacaaggt acctaatcag gtgatgaggc cagcgatggg aaggccagcg gaaacacaga      4440
     gattctttca gcgaatatat gtggatttcc tggggccgta tccgagatcc aagagtggaa      4500
     atattgggtt attcatcgct ttagaccatt acaccaaatt cgtgttcctc aaggcggtga      4560
     agaagctctc ggcggatgta gtggtgaagt acatgaagca ggagttgttc cacacgtatg      4620
     gagttccgga gactgtgttc tcagataatg gaacgcaatt caaaggagaa gcatttagga      4680
     cgctaatgcg ggagaatagg gtgacgcagg ttttcacagc ggtccattcg ccgcaggcca      4740
     atgcgtcgga aagggtaaat aggtcggtca tcgcagccat aaggtcgtac gtaaatgcag      4800
     accagagaaa ctgggacgag catctcagcg agatctgctg tgctttgagg acctcgatcc      4860
     attccggcac gggtgagtcc ccatattact tggtgtttgg gcaacagttt gtaggatcgg      4920
     gaggaacgta caagctcatg agagagctag gtatcatgga ggacagagaa atcaggctgt      4980
     ccaaggagga ctcgttggag gtggcacgcg ctcaagcgca gaaggcctta gcgaggcaga      5040
     cggagaagaa tgaaaggctt tacaatgtgc gttcgagaga ggtttcatat cgagagggcc      5100
     aagagatctt caggaggaat ttcaagcaga gtaacttcgc tgtaggatat aatgccaagc      5160
     ttgggcctag gtatattaaa gctagagttc ggaggagaac aggaagagct acttacgagc      5220
     tggaggacat gcaagggcga gcgataggta cctatcatgc caaagacttg aagcagtagt      5280
     tctcgcctcc gtggtttagc taaacaggat cgtttgagac cctgttctag ctcttgagaa      5340
     gggggcattt                                                             5350
//
ID   Gypsy-31_DAn-LTR repbase;    DNA;    INV; 2052 BP.
XX
AC   AAPP01015519;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DAn_;
KW   Gypsy-31_DAn-LTR; Gypsy-31_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2052
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015519; Positions   51562   49511.
XX
SQ   Sequence 2052 BP; 508 A; 477 C; 618 G; 449 T; 0 other;
     tgtaacgtcg gcgatagttc gaacgggttg gcagcctggg ggggtgcggt gtttcagcct        60
     ttctggcagc ccgatcgcgt aataggaccc tattcagcgt ttcgtggagg atcggatcga       120
     tctggtaacg cgctcaaagc taaggttagg aaaccgcgtg ggagtggcgt tctttttgaa       180
     tttaaccacg aaacaagcaa gttcgggcaa gaaaggagaa gcatccggaa attttcgagc       240
     aactgcagcg tagttttacc cgctgaggaa tcatcgtgct ggtgcaggac cagcaggcat       300
     acaggaagag ggccacaagc ggcaatttgg tggtgtacgt actgctcagt caaggcaggg       360
     cgcgatcgta gaagctaggt gagttttaag actggtcatg gttatgcgag cctgacgtag       420
     gtgttttcgt ttagctaggt caggggtacc agcgtgcgag ctagacccct ggtggcagag       480
     aggcatagtg cgagcaacgc ttggccagaa gaagaagaga agagcgggtc acagttgcgg       540
     cgcgaatctc tcagtcaggc cgcccacgag gcggggctga ggggagtcat caaaaccaag       600
     taggagctgg agataccgtg agctcgacct gaagtgaagc aatcggagcg ttcgcgacgc       660
     tttaaggggc gctccgccag agatccggat agggttcggc cctaacctca caggagtcgc       720
     cgtaaagtag gcgccatcct ggagcagtga cgaaggacgg agtgctggcg gcgctttaag       780
     cagcaccccg tcgatcacag gagccgtcgt gtagtaggcg ccatcctgga gtagtgaagg       840
     aagacagagt gctggcggcg ctttaagcag caccacgccg atcgcaggag ccgccgtgca       900
     gtaggcgtcc tcctggagga gtaaaaacaa ggacggagtg ctggcggcgc ttttaaggag       960
     cacgccgtcg aacggaggag tcgccgcaaa ataggcgagc tcctatagga gcagtagcgg      1020
     gagcggagcg ctggctgcgc tttaaaggag cgttccgtta tccggaggag caggcgtgga      1080
     ctagccttca gccgtaggat aagaagcagg gacagggcgc ttgcggcgct ttcaagaagc      1140
     gctttgtcga tcaggagagc ggagagactc gaccggctga tggcctaacg gtgccggaag      1200
     aggaggagaa gaagtagtgg gcgaagattt cgcgtcagag ctctgccact ggctgtatga      1260
     tttgttgttg gcattgttga cgggttaggc aaaggccctc ccgaattaca tattatcttt      1320
     tccagcctcg agtagtggaa gcgcttcaac gactcgtcgc ggatgtattg agtgagtaat      1380
     cctaaatcta tgccaagcca gcagaagtga tacggaattc tccgatcaat attttcctcg      1440
     ttttccgagt tccagcccaa gaggcttcac cggtcataca gtcaacccca cgcgtggcct      1500
     ttgtagtagc gctctcttag taactaaaat ctgttgtcat gatattgaac gcgagtccgc      1560
     aaatcctgcc aagtcgaata tacacttaag ttctctaatc tttagcaata agatattatt      1620
     aagcatagtc agaaaaatca tacattggag tattagaata gttaggaagc taggataagg      1680
     atgtcatcta gaattttaag gtcttttgtt aaggaataaa acaatgaagt ttataatgga      1740
     gtaagaaaac atatttcgcc tcgtttgggt cgccaccgcc ctgccaccaa cctatgccat      1800
     gtgccttctt gggggatctc cgaaggatcc taatatactc tggtctgagg agctcaggtt      1860
     tgacccacgc tgttcgtggg gtcgcgcacg catcattatc gattcaattt atgatccccg      1920
     aggcagcatc gaggggagag aagggggtgt tccagaaccc acccactagc cggcgagatc      1980
     tggccggaca cagcgtgcaa ctccctcctc tcgtccgata tatccagaga tgccacctca      2040
     ctgttcgtta ca                                                          2052
//
ID   Gypsy-31_DEl-I repbase;    DNA;    INV; 6723 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DEl-I.
XX
NM   Gypsy-31_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6723
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 471-471 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           791..2134
FT                 /product="Gypsy-31_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MYRNSDNVSSDEEVLEEYKKLLKTRVERQKSEQNQSE
FT                 RDCHPSTSRVPHIRDSVLDFKNARTQNTEEMQAEQIASMEAAIACALQRQQ
FT                 ELFDEKLAKIMGELCSLKDKTPKIQTFLEIEIEPGKECNEPLDMVKSVPEF
FT                 DGKQENYVSWRQAATAAYRVFEPYKGSSRHYQAVGILKNKVRGAAAAVLAS
FT                 FNTVFNFHAILARLDFTYADKTPAHVIKQELSLSRQGELPLLKYYDEIERK
FT                 LTLLTNKTIMTHDATAAAVLNEQHRDDALHAFISGLKKSLKIAVFPAQPRD
FT                 LPSALALAQEAEASNDRSAFAATFARHSEEKIFRPSNQRQTGWKNYEQNQS
FT                 QGAIKKNPHFVRTQKGATNQSGSFKQKPYNSAGPSQPAPEPMEVDTSSRFK
FT                 QPTAWQRGSTRSQQKINFMPEEKTDDEEYDFVAQASTTEIEDELAGEDSCN
FT                 FLE"
FT   CDS           2062..5214
FT                 /product="Gypsy-31_DEl-I_2p"
FT                 /translation="LRCASKHHGDRGRVSWRRLLQFFRIKSLLPYITRTVA
FT                 GKEIKLLIDTGTSKNYITPLPGLKGIVAADKPFTVKSIHGFTKIDKKCLVS
FT                 VFNVKTPFFILNDLKDFNGIIGLDLLKQVNAKLDFTKNVLHTSNGTEKIQF
FT                 AKAENVNFIKIDDEDVPLAIKATFDKMIVKNHKAFADPDEALPFNINTLAT
FT                 IKTDGEPVYSKSYPHPMGVTEFVNAEVKQLLADGVIRPSKSPYNNPTWVVD
FT                 KKGTDQNGVKKKRLVIDFRKLNQKTVDDRYPIPTISTILSNMGESKFFTTL
FT                 DLKSGFHQIELAEKDREKTAFSINNGKYEFCRLPFGLKNAPSIFQRAIDDV
FT                 LREGISKICYVYVDDVIIFSKTKEDHVRDVDWALTKLLEAGMRVSQEKSKF
FT                 FKKSVEYLGFIVSQTGLRTSPEKIKAIKQFPPPRTLYELRSFLGLASYYRC
FT                 FIKNFATIARPLTNILKGENGKISKYQSRKVDIDMTKEQRETFDRLREILA
FT                 SEDVLLSYPDFKKPFDLTTDASGSGLGAVLSQDGRPITMISRALRDNEKNY
FT                 ATNERELLAIVWALKNLRNYLYGVKGLQIFTDHQPLTFAVSDKNPNAKLKR
FT                 WKGIIDDHGAKLVYKPGKENLVADALSRQNINVLEDEIESDVATIHSEQSL
FT                 TYTIDTTDNPVNCFRNQIVIEEGNSSSVDTFILFKSKVRHVIKISNRENLL
FT                 NTLQDLVNAEVVNAIYCSLPILAFIQHRLVELFPSTSFKYTKSFVQDITDT
FT                 TEQREIVIAEHNRAHRAAQENVKQILRDYFFPKMLRLATETTLNCKTCSMA
FT                 KYKRHPSKQVVAETPIPSFVGEILHIDIFSTDGTLFLTCIDKFSKFATVQA
FT                 IASRAIVDVKSPILHIINFFPKIKTIYCDNERSFNSETIKSILMNHFNITI
FT                 ANAPPLHSTSNGQVERFHSTLAEIARCLKIEGNLSDTTELILLATNKYNNS
FT                 IHSVTNKKPIEIVHSKPADFESRIRKRIQQAQEKSLDQVNKDRTQKGYQAG
FT                 EKVFLKANKRIGNKLSPLCSEKIIEADLGTTVQIEGRVVHKDNLR"
FT   CDS           5465..6721
FT                 /product="Gypsy-31_DEl-I_3p"
FT                 /note="envelope."
FT                 /translation="MTKTFTDDHRTPVIMTDLTNIRKLVTTLKIHHRAARS
FT                 INLXGTALKVIAGTPDFNDWEQIKFNQEQLIRTDEGQTELNIKFQKRLNEL
FT                 TNSMNQIHKFETDKETHLLEIILAKNRIVITDLENILMGLTLAKLNIVSPA
FT                 ILDSSDIGEFKDRQLIDVSLIELLEVSSISVFQNSEILHFLIKLPSPKLIC
FT                 KKITVYPVQHQKKILDFEDGNLVAECPARNLNIGHCKTTVGATFCRELQNG
FT                 TCAQQIVSGAIAHCSTLPGHLDPVTIVDHGTLIVNDANVTITDNQGRETKI
FT                 SGTYLVTYSDKVALNGTWFVNQLGSSMRKPAVSAMAIVNITAHQNRLSLPF
FT                 LHELSLSNLHHIGTLREELTLGSFLSNSFALLATFFLCSTIWLGYRYLRAR
FT                 SHTKPRTDNDVERAGPRDVDHLKGG"
XX
SQ   Sequence 6723 BP; 2335 A; 1514 C; 1372 G; 1500 T; 2 other;
     gtcgcccaac tcaacgatac tcacgcgatc caagtgcaag aaattgcaag tgaaagtaaa        60
     aagtaaaatt aaaatcaacg acacatgcga tccagtgcaa taagtgcaag tgaaaatata       120
     aagtgcggtc aagaactggc actaaaaaaa taaatacgaa aatcaaaccg taatatttcc       180
     caaaactttt aacaaagtga gggaaaactg gaaaaaattc ctcttaacaa gtggaaaaaa       240
     aaccgtctgc aacgggaagt kcaagaaatt actccctaag aagacaacag cagcggcagc       300
     gataacggca gcagcagcga caacagcagc gacagcggcg gcagcgacaa cagcagcgac       360
     agcggcggca gcgacaacag cagcggcagc gacaacggct gcggcagtac cagtggcggc       420
     aaaagccgtc ggcaaaacat agaactcgaa gacgaaataa atataagaac atgtgagtag       480
     gctttttgtc ctaagtgttc gctaatgcaa atatttcaaa aataaatctc attgacactt       540
     aaaaacgaat aaatttcaaa ttttcctata ataaaataaa ccagttatat tttttggaga       600
     atttttagta ataaaaattt atatttttga tgcctgattt ccgtcacaaa aaaatacaaa       660
     acattttttt aataaaacgt tctttttgat atttaaattt tgttgcaaaa aataataggt       720
     gcaaaaatat ttttttaaca aacccttgat tgaattttgt ggcacccacg atattttttt       780
     attctgactc atgtatagaa atagcgacaa cgtctcatcg gacgaagaag ttctagaaga       840
     atacaaaaaa cttttgaaga caagagtaga aaggcagaag tcagaacaga atcaatctga       900
     aagagattgt cacccatcga ccagcagggt accacacatc cgagacagtg ttcttgactt       960
     taaaaacgca cgaacccaga acacagaaga aatgcaggct gaacaaattg cgagcatgga      1020
     agctgccata gcctgcgcgc tccaaaggca acaggagtta ttcgatgaaa aattagccaa      1080
     aattatgggg gagttatgct cattaaagga taaaactccg aaaattcaga cttttctgga      1140
     aatagaaata gaaccgggaa aagaatgtaa cgaacccctg gacatggtaa aatctgtccc      1200
     ggagttcgac gggaagcagg aaaactatgt ttcctggagg caggctgcta ctgcagcata      1260
     tagggtattt gagccataca aaggcagcag ccgacattac caggctgtag gaatacttaa      1320
     aaataaggta cggggcgcgg cagcggctgt attagcctca tttaacacag tgtttaactt      1380
     tcatgccata ctggcaaggt tggattttac gtatgcggac aaaactccag cacacgtaat      1440
     taaacaagag ttaagtctat caagacaggg agaactgccc cttcttaaat actatgacga      1500
     gatcgaacgg aagctaacgc ttcttaccaa caaaacaatc atgactcacg acgccaccgc      1560
     ggcggcagtc ctaaatgaac agcacagaga tgacgcttta catgcgttca tatctggctt      1620
     aaaaaagtca ttgaaaatag ccgtttttcc ggcgcaacca agagacttac catcagcctt      1680
     ggcattagct caagaagctg aggcaagtaa tgacagaagc gctttcgcag ccaccttcgc      1740
     ccgccacagc gaggaaaaga tatttaggcc gagcaaccag cgacaaacgg ggtggaaaaa      1800
     ctatgaacag aaccaaagcc agggggcgat aaaaaagaac cctcactttg tcaggaccca      1860
     aaagggagca actaatcaga gcggttcttt taaacaaaaa ccatataata gcgcaggtcc      1920
     aagccaacca gcgccagaac caatggaggt cgacacctcc tccaggttca agcagcccac      1980
     ggcgtggcaa agggggtcga cacgatccca acaaaaaata aacttcatgc cggaagaaaa      2040
     aaccgacgat gaggaatatg acttcgttgc gcaagcaagc accacggaga tagaggacga      2100
     gttagctgga gaagactcct gcaatttttt agaataaaat ccctgcttcc ttacattaca      2160
     cgtacggtag caggaaaaga aataaaacta ttaatcgaca caggcacctc taaaaattac      2220
     attactccac tcccggggct gaaaggcatc gtggcagcgg ataaaccctt cacagtaaag      2280
     tcgatccatg gctttactaa aatagataaa aaatgtctag tttcagtgtt caacgtaaaa      2340
     acaccctttt tcattcttaa cgaccttaag gattttaacg gcattatcgg actcgactta      2400
     cttaaacaag tgaatgcgaa gctcgatttt actaaaaatg ttctgcacac tagcaatgga      2460
     actgaaaaga tccagtttgc taaagcggaa aacgttaact tcataaaaat cgatgacgag      2520
     gacgttcctc tggcaattaa agccaccttc gataaaatga ttgtaaaaaa tcataaagcc      2580
     ttcgccgatc cggacgaagc gctgcctttc aacataaaca cattggcaac gattaaaacg      2640
     gatggggaac cggtatactc taagtcatac ccgcacccca tgggtgtaac cgaattcgtc      2700
     aatgcagagg ttaaacaact tcttgcggac ggcgtaataa ggccatccaa gtccccatat      2760
     aataacccta cctgggttgt ggacaaaaaa ggaactgacc aaaatggggt taaaaagaag      2820
     cgattggtta tcgactttag aaaactcaac caaaaaaccg tagacgatag ataccctatc      2880
     cctaccatct cgacaatact gtcgaatatg ggcgagtcga aattttttac gacactcgac      2940
     ctcaagtcag gctttcatca gatagagctg gcagaaaagg acagggaaaa gacagccttt      3000
     tcaatcaaca acggcaaata cgaattctgt agactgccat ttggacttaa aaatgccccg      3060
     agcattttcc agagggccat cgacgatgtc ctccgggaag gaatttcaaa gatatgctat      3120
     gtgtatgtcg atgacgttat aatattttcc aaaacaaaag aggaccatgt tagggacgtg      3180
     gattgggcct taacgaaact cttagaggcg ggcatgagag tgtcccaaga aaagtcaaag      3240
     ttcttcaaaa aaagcgtcga atacttggga ttcatagtgt ctcaaacagg gctacgaact      3300
     tcacctgaga agatcaaagc aataaaacaa ttccccccgc ctagaacgtt atacgaactc      3360
     agatctttcc tgggactagc aagctattat aggtgcttca taaaaaactt cgcgactatc      3420
     gcaagaccct taacgaatat cctaaaggga gaaaatggta aaattagcaa atatcagtcg      3480
     agaaaagtcg acatagatat gaccaaggaa cagagagaaa cgtttgacag gctgagagag      3540
     atcttggcat cagaggacgt tctgctatcc tacccggact tcaaaaagcc atttgacttg      3600
     acgactgatg cgtcaggctc tggattggga gcagtactat cacaagatgg ccgccccatc      3660
     actatgatat cacgagcgct gcgggacaac gaaaaaaatt atgcaaccaa cgagcgagag      3720
     ctcctcgcta tagtttgggc actgaaaaac ctccggaatt acttgtacgg agtgaaaggc      3780
     ttgcagatct ttaccgacca ccagccactt acctttgccg tctcggacaa aaaccctaac      3840
     gcgaaactaa aacgctggaa ggggattatc gacgatcacg gcgcgaaatt agtttataaa      3900
     cctggcaaag aaaaccttgt ggcagacgcg ctgtctcgcc agaacataaa cgtcttagaa      3960
     gacgaaatag aatcagacgt agcaaccata cacagcgaac aatcactgac atacaccata      4020
     gacacgacgg acaacccagt aaactgtttc cggaaccaaa tagtaattga ggaaggaaac      4080
     agctcctctg ttgacacatt catcttgttt aaaagcaagg tgcgacacgt aataaaaatt      4140
     tctaaccgag aaaatctgct taacacttta caagatttag ttaatgctga ggtggtaaac      4200
     gcaatatatt gctccctacc gatcttggca tttattcaac atcgactagt cgaactgttc      4260
     cccagcacgt cattcaaata tacgaaaagc ttcgtgcagg acataacgga tacaactgag      4320
     cagagggaaa ttgtcatagc agaacacaac agggctcacc gagcagcaca agaaaatgta      4380
     aagcaaatct tgagggacta ttttttccct aaaatgcttc ggttagcaac agaaacaact      4440
     ttgaattgca agacctgttc aatggcaaaa tacaaacgcc atccatctaa gcaagtggta      4500
     gcagaaacac cgataccttc ttttgtgggg gaaattctcc acatcgacat tttttcaaca      4560
     gatggaaccc tttttctaac atgcatcgat aaattttcaa aattcgccac ggtgcaggct      4620
     atcgcatcga gggccatagt ggacgtaaaa tcccctatac tgcacataat aaatttcttc      4680
     ccaaaaatca aaacaattta ttgtgataac gaaaggtcgt tcaactccga aacaattaaa      4740
     tcgatactca tgaatcattt caatatcacc atcgccaacg ccccgcccct acatagcacc      4800
     tcaaacggtc aagtagaaag gtttcatagc accctggcgg aaatagccag atgcttgaaa      4860
     atagagggca acttaagcga tacgaccgaa ctaattcttt tggcaaccaa caaatacaac      4920
     aattctatcc actcagtaac caacaaaaaa cccatagaga ttgttcactc aaaacccgcg      4980
     gatttcgaaa gcagaattag aaagagaatc caacaggctc aagaaaaatc ccttgaccag      5040
     gtaaacaaag ataggaccca aaagggctat caagctggtg aaaaagtttt cttaaaggca      5100
     aacaaacgca taggaaacaa gctctcgcca ctatgttcgg aaaaaatcat tgaagcagac      5160
     ctggggacca cggtccaaat tgaggggagg gtggtccaca aggacaatct acgctaacca      5220
     tcttcgcgag attactgaac ccctttttct attattttta tatttttcta ggttaggaaa      5280
     attcgtctta gtttttgtac ttacggctgt caagacggac gcgacagtaa aacttaatga      5340
     ctacacgaac gcagactaca tcccgataga agacaacgaa attgtcatct gggagtccta      5400
     cggataccta cagcactcaa cgaacgtgac gacttatgaa gactacgccg accagacgga      5460
     aacaatgacg aagacattta cagacgatca caggacacca gtcataatga cggaccttac      5520
     aaatattcgc aagttggtga ctaccttaaa aatccaccat agagccgcta ggagtattaa      5580
     cttamtcggg acagcactaa aagttattgc cggcacaccc gactttaacg attgggagca      5640
     aataaaattc aatcaagaac aattaattag aacagatgaa ggacaaacag aattaaatat      5700
     caaatttcag aaacgtctaa atgaactcac aaactcaatg aatcaaatcc ataaattcga      5760
     aacagataaa gaaacccacc ttttggaaat tattctagca aaaaatagaa ttgtaatcac      5820
     ggatctagaa aacattttaa tgggcttaac cctggcaaaa ttaaacatcg taagtccagc      5880
     aattttggat agttccgata ttggcgaatt caaggacagg cagcttattg acgttagttt      5940
     gatagaatta ttagaggtat ctagtattag tgtttttcaa aattctgaaa ttctacattt      6000
     tctcattaaa ctccctagcc ctaaattaat atgtaagaag ataacagtct atccagttca      6060
     gcaccagaaa aaaatcctgg actttgaaga tgggaacctt gtcgccgaat gcccagcgcg      6120
     aaaccttaac atcggtcatt gcaaaacgac ggtcggcgcc accttctgca gggagctgca      6180
     aaatggcacc tgcgcacagc aaattgtttc tggggctatt gcgcactgct ccacactccc      6240
     aggtcacctg gatccggtta ccattgtgga tcatggcacc ctcatcgtga acgatgccaa      6300
     cgtgaccata accgataacc aagggcgaga gacaaaaata tccggaacct acctggtaac      6360
     ctattctgac aaggtagccc tcaacggaac ttggttcgta aatcaattgg gaagttcaat      6420
     gagaaaacct gctgtgtcgg ccatggccat agtcaacatc acggcccacc agaaccggct      6480
     gagtctccca tttcttcacg agctgagtct gagcaatctc caccacatcg ggaccctcag      6540
     agaagaactt acactggggt ccttcctcag caactccttt gccctacttg ctaccttctt      6600
     cctgtgttcc accatttggc tcggctatcg ctatctaagg gccagaagtc acaccaaacc      6660
     aagaactgac aacgatgtgg aacgagcggg tccccgggac gtcgaccact tgaagggggg      6720
     aga                                                                    6723
//
ID   Gypsy-31_DEl-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_DEl-LTR.
XX
NM   Gypsy-31_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-351
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 472-472 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 351 BP; 107 A; 85 C; 90 G; 69 T; 0 other;
     agttaacaca ggcagttccc aagagaagaa actgccgagt tgcagaccat atccggtggc        60
     ctgcacgcgc agcgaagaaa ccgctgaccg cgcgttccgg gtgcaagtgc ccggagtcag       120
     aacagagcac tcgcggagcg agtgatcgcc acgggcaggg acaaaacgct gacccggcac       180
     cttggcgaca gcgctgcagt caggcaaagg tctcaagctg cagttggata ggttctttag       240
     tttagtcaaa aattgtactc cagagaacta actctgtata aaatacctat gcccttacgg       300
     gcgtatggaa ataaataaaa tataaaataa atacccaacg gttttataat t                351
//
ID   Gypsy-31_DMel-I repbase;    DNA;    INV; 4910 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4910
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   Not a consensus, representing a sinlge old insertion.
XX
SQ   Sequence 4910 BP; 1795 A; 913 C; 902 G; 1300 T; 0 other;
     ataaaaagaa tatagaacaa ttggagcaaa agcactcaac caacaacaaa aaacactcaa        60
     caccaaccat aaacactcaa aaaaaaatat ccaaatgcaa cgcaaaacat cagcagcggc       120
     tatacttaaa ttcatcgaca tttatataat cttattaaca taatattcta agcattacca       180
     aatgaaaaag tgtaaataca aacgcaacat tcgtaagtac aacgcctatc ggttaaatta       240
     taaaatctta aatttttact gctaaggtta ttgtaagtta ttggtgctat ttaaatgagt       300
     gaaagcgata aagctttaga aaacttcgtg tcaagttaaa ataagtggag tgtaaaacag       360
     gctcagcgat tcgacaatac aagtgtaaga aacgaaaata aagataattg gtgggaagta       420
     gagaatcaag cttgcaatat gctttcagca agtcaataga gcagtcaaaa agaattattt       480
     gataagcagt tacaagagat aggagagcgc ataaaaaaaa ataacagtga gcaccccaga       540
     aatggaaact tacagagatg cggaaattat accaggtgtt gtgtgcactg agccattaga       600
     tataataaag tctttgccac accttgagga cagaggtgaa acatatgtct catggagaaa       660
     agcggatgat gtggctttta aagtttttga aaaaaaatct tggcattatg cgaaataaag       720
     gtaaaaactc tgcaaattgt gtgctggctt catttaacac accgctgaat tttaaggcac       780
     tgatcaatcg tcttgatttt aggtaaaaga ccgatttata taaataagca tgagttacga       840
     agaacgttaa gacatgaggg cgacatgaca ctgaccgaat tctacgacga ggtcgaaaaa       900
     aaattgactc ttcttacgaa caaaacaata ttgacatgcg atagcgtttc ggcgaaaaaa       960
     gtcaataagc gatatcttat ttgtcaaagg accctaagac ttaccaacag cccttgcttt      1020
     agcacaagaa tttgagtcga atcacgaacg ctaccaattt gccctgattt actctagaag      1080
     ctttggagac agaggccaga aggccgaaaa aaaaaccacc tgaaagagat agggataata      1140
     atatgcctct tatgcctcac agcagaaaag gcagttcagt cagtaaatga tactgacgta      1200
     tatatgcgat ccattcgaac tggccaaaac caatttagac agccaccact cttgaatcag      1260
     ggtaccttcc ctttacataa aaatatttgg tcaaaccagc agcagactac ctggtcagct      1320
     caggtaaaaa tgaacaatga gcaagccgcg aaaagaccgt aaagtggcac aagcaggttt      1380
     acagggccaa agcagcaaag agttaaccat ctcgatcatg aggtggatcc agcagaagca      1440
     gaagttgagg atgctgaaga cgaacgtact tattatgatc atgtacattt tttagccaaa      1500
     gttccctgct accgttcata ggtagaaaga tagcagggag aaccaaaaat ctttcgatcg      1560
     ataccgggtc ttaaaaaaac tgtatgtagt tttaaaaata aagtacataa tgccggtaca      1620
     aaaagaattt acagtaaaat cccttcatga ctataacaca ttgaaatata aatgctttct      1680
     taagccaaat cggacacact gacacaaaca atcgcgatat tggatttaaa aaaatacaac      1740
     tttaaaggtc gacaatgcag tcgaacaaat tcaactttta taatgtaata gcgtaaactt      1800
     ctctgatact aaagatatcg tagtaccaaa gcctacagat tatacgctat gctaagagac      1860
     cgattgggtg tattttcaga gccagaagag gtactgcctt ataatacgaa tattattgct      1920
     aatataccta ccgaagacga ccgaccaata tactcaaaac tttatccata ccccatgggt      1980
     gtggcggatt ttgtgaataa ggagatgaag gcattgttaa aagacggaat tatcagaccc      2040
     tcgcggtcac catataataa tcaaatttgg gtagtcgaca aaaacggcac agatgaaaag      2100
     ggaaatagaa aaaaaggttg gtaatagatt ttcgaaaatt gaactcaaag gcagttaacg      2160
     acaaatattt aataccacaa gtggtttcat cctgacaaac tagggagaag ccaaatactt      2220
     tgccactctg gacctttagt caggattcca tcaaatcctc ctcgccgaaa aggataggga      2280
     aaaaatagct ttcttagttg cgaatggaaa ttacgagttc tgcagacttc gattcggtct      2340
     taataacgca cctggtattt ttcaacgtgc catagatgac gtactcttag aaacgaaatc      2400
     ggaaaatcat gttacgttta cgtagacgac gtatttattt tttagatcga ttcgaggacc      2460
     atttaaatca cattgcttgg gtgctagata gactgttcca ggccaacatg agggtgtcca      2520
     aagagaaatc tccttttcaa agaaaaggcc gaatatttag gattcgtggt atcaaggggt      2580
     attattacaa ccaatcccag taaagtagaa gctatccata gttatgaaga accaacaaat      2640
     ttgttcaata ttagattgtt tttggcgtta gcttgtaatt aacgttgctt tataaaggac      2700
     tttgcctcca tagctagacc gctgaatgac attctaaaga gagaaaacgg tgatgtttca      2760
     gccagtcgct ctaaaaagat accagtagcc tgtgatgaca agcaacggta tgcttttgaa      2820
     aaacttaaaa atgtccttct gtccgaaaat gtaatgttac tctatcctaa ttacagaaaa      2880
     ccctttgatt taactacaga cgcttcggcc tatggcctgg tgctgttcta tcgcaggatg      2940
     gcaagcttat caggaaaatt actaagatat ctaggacttt aaaggataga gagcttagtt      3000
     ttgcaccgaa cgagcgagaa cctatggcca ttgtatgggc tttcaagagt ttgaggaaca      3060
     gtatggtgtt tgtatggcgt tctaaatctg aacattttca cagaccacac gccgttaacg      3120
     ttcgccgtgt cacataccca aacgctaaaa tccaaaggtg gaaggcgttt atagacgaac      3180
     ataacgctta catttttttt aagctgggaa aggaaaatta tgttgcagat gcactatcca      3240
     ggcaggccct tcatgctttg gaaaatgttg tagaagagtt ctcagcaaca acattccgac      3300
     atactaataa aatggtcacc gacgtttata ataaagatta acaaagggaa atagtaacaa      3360
     tcgaacataa cagagcacac ggggcagcac aagagaatgt taaacagatt ttagaagatt      3420
     tattttttcc taaaatgtct cagcttgcag ccagtactgc gggtaactgc tcagtctgta      3480
     aaaaagccac ccgcaaaaac aaatccttgg gagaacacct aatccctcgc aaattggaga      3540
     gacgttgcaa atcgatatct tctctacaga cagaaatact ttctgaccct atcgataaat      3600
     tttcgaaatt cgcgattgta caacacatag attctcgaac atataaccta caatgatgca      3660
     attaatgaac tttaacccac attcgatgac aatatattgc gacaataaac tccgagtcaa      3720
     ttaggtcact tttattaaat cagttcgaag ttcaaattga aaatgcaccg ccactccata      3780
     gtatctcgaa cgggcatgtg gaaaggttgc gcagcacact gttagaaatg gcacgatgtc      3840
     ttaaactcaa aagaggcata attgacacgg tcaacctaat acttcaggca accgtagaat      3900
     acaacaaaac agttcattca gtcattaaca aaaggcagat cgatattatt cataaaatac      3960
     cttccgatct tgcactggaa atcacaggca agattaataa tggacaagag gtacaattga      4020
     aaagaacgaa tgaatcgaga cgacacagat cctttcaggt tgggacactg tcaaagtaaa      4080
     acttaacaaa ctaaccccac gttataaaga ggaaaaaatt gaagacagac attggggcac      4140
     gtgttcttat aaaaggaagg gctgttcata aagacaatat acgttaggat tatggtacta      4200
     tctggcttat tagaataaat tatggttttg caaaagttta atttagtaaa catttgacaa      4260
     ttctacatca atatttcttt atcatttttt acaataggta aaacctaaag gtaattagaa      4320
     ctagttagaa ctatccattt caaaaacttt taataaaggc aacagacgat ttttgagtta      4380
     aatatgagac acagcaaaac atctacaaaa taaacgagct aattcagcag atataactaa      4440
     agttcttcag gaaaaaaaac caataacgct atcaataacc tttcccgata ctttaaattt      4500
     aaacaaaccc tatttaatca attagcgttt tacgtaaacc acagtaactg attaaattgt      4560
     ataacgactt ataaatttct ctattctagc ttatattttt gtactttata aacaagccaa      4620
     tactattatc actgtataaa tgaatttata atagttaaat attttatagt taattaagca      4680
     aatcattagc acaggagaaa gctcttaatt ctcgcttggc attacggcgt atccgattat      4740
     tgcaactaat tttaattcat ccacaactgc acaatcaaac tatcacctag ttcccgccac      4800
     cagctgcttt attcaccgtg agaaccatga ctacaccact ggcgtgaatt ggccaaataa      4860
     ctttaaaatc ttaagaaggc tggggacagc cttcgtctta gtaagggaag                 4910
//
ID   Gypsy-31_DMel-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-286
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 731-731 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 286 BP; 96 A; 57 C; 54 G; 79 T; 0 other;
     agttaagact actcacccag catccaatct gccgagataa atgcaagcgc ccaaagcttt        60
     caagataaga gtgaagcctt gactcaagat gtagggatag cttaagagat aatgattgta       120
     ttagtcagtt gatttctgga tattaaacgc gttggtcatc gccacgcaaa tcgaaacttg       180
     aatactcatt tagcgcagac cgcgcttgtc aacgaaattg ttaacattat attgtttcgt       240
     cggccatcgt cacgaaaata aataacaata atagcatttc ataatt                      286
//
ID   Gypsy-31_DP-I repbase;    DNA;    INV; 3633 BP.
XX
AC   super_619;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DP_;
KW   Gypsy-31_DP-LTR; Gypsy-31_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3633
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1541-1541 (2012).
XX
DR   Genome; super_619; Positions    5053    1421.
XX
CC   Positions [2221-2697] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1501..3066
FT                 /product="Gypsy-31_DP-I_1p"
FT                 /translation="MPIGYMSVKLSKAQRNYSVTELECLAVIKGIKKFRAY
FT                 IEGQEFLVITDHAALQWLMRQKDLSGRLARWAIQLQGFDFRIEHRKGSQNV
FT                 IADTLSRQNESSVDEFIDLGPIIDLESEHFTLLEYLDLIERIQQNQEKLPD
FT                 LKITDGYVYKRTEASIGDSESDHQSWKLWVPSGLVSSVIKQAHDSPSASHG
FT                 GMGKTVEKLKRYLFWPKMLVQIREYVNNCVICKQTKSPNIVLRPPLGKPIQ
FT                 SERPFQRLYMDLLGPYPRSKAGNIGLLIIVDHCTKFHFLCPLKRFTSGKIC
FT                 EYLENSIFFTFGVPESILTDNGSQFRSGFFEAFLTRFSIKHICTAFYSPQA
FT                 NASERLNRSVLAAIRAYVGKDHTTWDQRLNEINGAIRYSLHTTTGYSPYFL
FT                 TFGQNMILNGKDFELLRKLNLLSDDSRVNYPDALQLARYAAKVNNAKAHAT
FT                 NARVYNLRSRNIQFNVGDQVYVRNFSQSNASKQFSHKLAQVFVTATVTKKL
FT                 GPVYYELSNEKGKKMGVYHVKDIQTR"
XX
SQ   Sequence 3633 BP; 1083 A; 765 C; 770 G; 1015 T; 0 other;
     gtacgggaga taatcgtctg tacacaccca tcacgattga agacaaggtt tacaacgcct        60
     tgttagattc tggagcgtcg gttagttgcg ttggcaacaa tgccgcccgt gctctcctta       120
     accatccgaa atcacgtaag tgttcgggaa gggttaaaac agccagcgga accaaatgct       180
     cggttgaggg cattttcaca gcgactatta tatatcgtag tctcacggaa agtatagatt       240
     ttttcatcat accaaactta acccaagagg tttacttagg aattgacttt tttaggaaat       300
     ttaaacttgc tgatcgactc atgagcgaaa gtgtctctga gttagatata ggtcccacgg       360
     aggatgagga aagctcaccc aagttacaca aactttctag taaagagcag gagagactgc       420
     aaggtgtcgt cgaaattttt ccttcgtacg aacgagacgg attgggcaga accagcatta       480
     tttcgcactc gatcgacgta ggtgatgcta aggcgattaa acaaagacac tggccaatct       540
     cccctgcgcg cgaaaaactt atgtttgctg aggtagataa catgttagct ctcgatatca       600
     tagaaccttc ttgcagtcct tggagtagta attgtgttct tgttcaaaaa ggtgataagg       660
     ttcggttgtg tttagactct cgcgagatca ataaatacac gaggaaggat gcttacccct       720
     taccacatat tgacgggatc ttaagccgct tacctccagc gcggtatata actggtcttg       780
     atatgaaaca tgctttctgg caaataccat tggacgagcc atcacgaccg tatactgcgt       840
     ttaccgttcc gaatcgtcca ctgtaccaat ataagctcat gccatttggt ctgacaaatg       900
     cacctcagac cttatgccgc ttaatggacc atgtcatacc cccacattta cggaatcgag       960
     tttttgtata tctcgatgac ttgcttgttc tatagaatga ctttgattcg ctcttgattc      1020
     ttttgcaaga aatcgcaata tgcttaagaa aagcgaatat tactatcaac gttcgaaaat      1080
     ctaagttctg catgagagag attaaatatc tcggtttcat aatttcggat ggtccgatca      1140
     agactgatcc atttaagatt caggcaatca acgacttccc aattccaaca acggtaaagc      1200
     agttacgacg gtttctcggt ttatccggat ggtatcgacg tttcgtctag aattatgcct      1260
     ccgtgagcta tccattgacc gagatgctta agaaacagaa tacttcctta atatggaatg      1320
     aaaccgcaac caatgctttt gaagaattga aacgaagatt aacatcagct ccaatccagc      1380
     tccaattaac atccaatcct cagaactcct gatttttcta agaaattcat cttattgtgt      1440
     gatgctagtt cttttggtct cgggtgagtc ctagcgcaag agaatgaaga aggcttcgaa      1500
     atgccaattg gatacatgtc ggttaagtta tccaaagctc aacggaatta ttccgttaca      1560
     gaactagaat gtctagcagt tattaaggga attaagaaat ttcgagctta catagaaggc      1620
     caggaattct tagtaataac cgaccatgca gcattgcagt ggttgatgcg acaaaaggat      1680
     ttgtctggaa ggctcgcgcg atgggctata cagttacagg gttttgattt tcgcattgaa      1740
     caccggaagg gttcacaaaa tgttattgct gacactctgt ccaggcaaaa tgaatcgtca      1800
     gtagatgagt ttatcgatct agggccgatc atcgatttag agtccgagca tttcactttg      1860
     ttggaatatc ttgatttaat tgaacgcatt cagcagaacc aagagaaact tccagattta      1920
     aaaataacag atggctatgt atacaaacgc accgaagctt cgattggaga ttctgaatct      1980
     gaccaccagt cgtggaaatt atgggtaccc tctggcctag tcagtagtgt tatcaaacaa      2040
     gcccatgatt ctcctagcgc atcacatggc gggatgggta aaaccgttga aaaacttaag      2100
     agatacctgt tctggcccaa gatgttggtt caaatccgag agtacgtgaa taattgtgtc      2160
     atttgtaaac agaccaaaag tcccaatata gtattacgac caccattggg aaagccaatt      2220
     caatcagaga gaccgtttca acgactctac atggatctgt taggtccata ccctcgttca      2280
     aaggccggga atatcggatt attaataatc gtggatcatt gtacaaaatt ccattttctc      2340
     tgtccattga aacgattcac ttccggaaag atttgcgagt acttagaaaa ttccattttc      2400
     tttacgtttg gagtgccgga atccatctta acggacaatg gttctcaatt tcgatcagga      2460
     ttctttgagg cttttctaac tcgattttca attaaacata tttgtaccgc tttttattcg      2520
     cctcaagcga atgcaagcga gcgcttaaac cgatcggttt tggcggcgat ccgtgcgtac      2580
     gtggggaaag atcacactac ctgggatcaa cgactgaatg agattaacgg tgctattcga      2640
     tacagtctac atacaaccac cggatattct ccttacttcc ttacgtttgg gcaaaacatg      2700
     attttgaatg gcaaggattt cgaattgctc aggaaactta acttgctatc agatgattct      2760
     agagttaatt accccgatgc tctgcagttg gcaaggtatg cagcaaaggt caacaatgca      2820
     aaggctcatg caaccaacgc gagggtatac aatttgagga gtagaaacat acaattcaac      2880
     gtcggagatc aggtttacgt tcgcaatttc tcccaaagca acgcgtctaa acaattcagc      2940
     cataaattag cgcaggtgtt tgtgaccgca acagtaacga aaaagctagg tcctgtttat      3000
     tacgaattat cgaatgagaa aggaaagaaa atgggagtat accacgtaaa ggatattcaa      3060
     acccgctaat tcactgtcct tcttttcttt tcgattacga tccctgtcga tcactccgag      3120
     acataatctg gtggtggaga gtgttgtggc cagtgaagca aacccagatt aaatacccta      3180
     ataatttccc agatataaag cagattcaaa tcacgcgcca acttgattag ttcgaacacc      3240
     aaggctttac ttcgaatatg gagctttaat tgctcgaatg ttctttttcg tctctcgaga      3300
     ccgaattcca tggaagggtc ccgttaaagc tcgtctatgc cgcttaagcc gacagcgacg      3360
     gtgaacacgc ggatcaattc catttttctc ccaaaacact tcggttgtgc ctgtgccaat      3420
     agtgccaaac tctagtggaa gttcccgtgt ccctgtatta cataatacat accaaattac      3480
     ataactgcaa gtcggcggag aatcgactaa aaagcaagat caagctatat tgtgtggtga      3540
     aagtgcaaag tgctacgtag agaaaagaag gtgattatag aggaaagcag gtttggtaca      3600
     ttcactgaat tccgaatcta ttacagaatc tct                                   3633
//
ID   Gypsy-31_DP-LTR repbase;    DNA;    INV; 1413 BP.
XX
AC   super_619;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DP_;
KW   Gypsy-31_DP-I; Gypsy-31_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1413
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1542-1542 (2012).
XX
DR   Genome; super_619; Positions    1420       8.
XX
SQ   Sequence 1413 BP; 426 A; 298 C; 317 G; 372 T; 0 other;
     tggtcactgg aggtctgccg tgctttggcg ctctcacgcc taaacccccc acgcaacctc        60
     cagtgtctta tttttggccg cttcgaatta ccagcgtttc cgttgtacgg acgatctgca       120
     tagactgcac ccaacaaaag acgtttttgg agaagctaac cgcccatatt gagacagcat       180
     tgagccatca gctgagttcg tttcaattga gatcgggact tgcggagcag gcttcgaatt       240
     atcagcatgt accagcagac gttaggagta gagcaagcca agaggcagac ttaaggaata       300
     ctagcaatcg ctcttcagtt tcaatttcac cagaaaaggt aggacatgtt attcaaaact       360
     ggaaggtaaa gtttgacggt agtaaggacg gtctatcggc cacagaattt atttaccggg       420
     tacgttcctt gacggcacag accctgggaa acaatttcca gctggtttgc gatcatttgc       480
     acttattgtt atccgcaaaa gcaggtgatt ggttctggca gttccatcgt aaacatgaag       540
     agttcgcgtg ggagactttt tgtctagcat ttagggataa atatgacgat gctgccactg       600
     atgtcgacat atggcgtaga atcgcgaaac gaaagcaagg ggaaaatgaa ccttttgatt       660
     cctatcagaa tagtatagaa gagttggtga atagactcga gcgtagccta ccagaatgcg       720
     accttgttaa gctgttgatt gacaattcga aaaagtacac ttcatcacga gttactacat       780
     ttgaatatca cttcgataaa gaaattactt ttagaggtta aaaagcacga acaattttat       840
     tcggagcttc gaaacccttc ttacaaaacg ccttttgtaa accggcgcaa catctccgag       900
     atctctccgg agagggaaca ccttgaggag cctgaaccaa taatatcagc gatcatgcgt       960
     aataagatgt cctgctggaa ttgtgataag atagggcata gatgggatga ttgtgtggaa      1020
     cctagaagca tattttgtta cggttgtgga accaagaatg tttacaagcc acgttgctct      1080
     aagtgccatc cttcggaaaa ccggctgcgg gatgtgtcaa cgaaccccct gtaggcacat      1140
     ccgtaccaaa acatagcgaa agcatcagtc agactataga tgagggttta gctaaaaccg      1200
     ctatggactc aggattttta tcggataaac gaccaactag atatttaccc ttacatgtaa      1260
     gactgtcaaa ttacaagaaa gctagaaata ggatatttgg cgatctttgt accatatcaa      1320
     ctacgacaaa atctaaaaga tctacccttc gattacgcaa attttggaaa acagttgtta      1380
     gcactcgaca atgcttaatt gcttccatat tca                                   1413
//
ID   Gypsy-31_DWil-I repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   18-AUG-2020 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_DWil-LTR; Gypsy-31_DWil-I.
XX
NM   Gypsy-31_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4368
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (18-AUG-2020).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..1386
FT                 /product="Gypsy-31_DWil-I_1p"
FT                 /translation="MAEIKPFLCANIEKSLWRNEWEKWLRSFNIYVDTEEI
FT                 SSVIKKRNKLLHLGGPQLQEVVYSLPGALVAYDATKENDVFTPLVDKLNEY
FT                 FSPQRNAVFERHMFRSMVPRQGECFAEFLLRLRQQASKCSFGATKTEIEEI
FT                 CIADKIIDAWAKTALKKKLLEAELKLEEIINTCTVEEQVNQQSEAMVIPSD
FT                 ADIVKKIAVQTKRNDRTNDVCGRCGAADHDERSMACPARNSKCNKCSRFGH
FT                 YARMCKTALKRRFGTPYDNQRKRPRTSQFQVRAIDEEETKCHSDNSWSNCF
FT                 KITGEPEGEETVSCLLGDPSCK"
FT   CDS           1359..4367
FT                 /product="Gypsy-31_DWil-I_2p"
FT                 /translation="MSVGGSQLQMIIDSGSRYNLISLGDWLQLNSVXATVF
FT                 NVRXNSSTQFRAYASDDVLRVTNVFEAPIRIQERPEMIATFYVIENGRQSL
FT                 LGRDTAVQLNVLKIGLGVNRVDSCAHFPKWKASPVRLAIDHNVRPVQQPMR
FT                 RFPTALEDRIAERISQAVQQDIIEPVHGPSSWISPVVIAYKGSGEIRLCLD
FT                 MRRANLAISRENYPLPTFDMFMTKLREARCFSRLDLKNAYHQLELDESSRQ
FT                 ITTFITHKGLFRYKRLFFGVNSAPEIFQRRLEELLAGCPNALNYIDDVIVF
FT                 GKNEEEHDKALTAVLKIFDTHNVVLNKQKCVYKTTKLKFLGHILSDHGIEA
FT                 DPEKVKVITDFRAPKTKEETRSFLGLVTYVGKFIPDLANTTEPLRRLIKAN
FT                 TKFDWTNKEQQAFDTLKKQVVEVTKLSYFNKNLRTCLIADASPVALGAVLV
FT                 QVDDHNDHHIVSFASKSLTDVEKRYSQTEKESLALVWAVEKFYYYLAGLEF
FT                 DLITDHKPLESIFKPTSKPPARIERWLLRLQSYRFRVIYKAGKENIADSVS
FT                 RLCQLTEAVAFDWQDEQNIFQIVAKGVPKSLTISEIMEKSMQDEEIIDAMT
FT                 YLSTNSWEANSSSPYYPFRWELSTVGNVLLRGTKIVIPTILRSQVLELAHE
FT                 GHPGESAMKRRLRSKVWWPRIDREAEGFVKACRDCISVSLASKPAHMDRHA
FT                 FPAGPWQCVASDLLGPLPSNDYVLVLIDYFSRYMELKFIKTISSKVLIEQM
FT                 EEIFSRLGIPRTLRTDNGRQFVSLELQDFCRTNGITQITTPPYWPQANGEV
FT                 ENMNKSLVKRLKIAWSKGKDYKREIQNFVMMYNVTPHGTTGAAPSELMFNR
FT                 IIRDKIPDVRDVVGDVGESSERDLDCWNKQKGKEKADKGRGAKASDIQPGD
FT                 KIVLKNVLCPHKLTPTFDTTEYVVVNRKGNIVQVQGGGKTLTRDVSHLKKI
FT                 PVTGTHEAATTTDSVQGPSTPRQTSQAPENEACAQDEGLKLKLKNIGG"
XX
SQ   Sequence 4368 BP; 1450 A; 871 C; 1079 G; 966 T; 2 other;
     ttggcgacga ggtgaaaaga ggaaacacag agaagaagga aaacgcggcc taagcaaaaa        60
     aaagaaaaaa aaaagagaaa agagaagtga ggttatacac gaagcaacgc gtgccagacg       120
     cggccataag aataaaaatt aaataaaaaa catacatata agtgcgtaca tgtaagtata       180
     caatggtgat ggaaacagaa tataaattaa ttatctgcat ttgacagagg ccgcgtcgag       240
     agagtgcaaa ggcgactcta agacaagcca aaagaagaaa aaaaaagcaa acagctgagc       300
     aaggcagaac taacgcccgt gcaagctgaa aaatatctgg aaaatgccag aagttgtaca       360
     cagcatggct gtccaagcga aatcatctga aaagaatcag aggctgagca cgaaataaag       420
     tgtaagctaa aacaaatcag caagatggct gaaattaaac catttctgtg cgccaacata       480
     gaaaaatcgt tgtggcgcaa cgagtgggag aaatggcttc ggtcattcaa tatctatgtg       540
     gacacagaag aaatttcatc ggtaattaaa aagcggaaca aattattgca tctcggcgga       600
     ccacagctac aagaggtggt gtacagtctt ccaggcgcgt tagtggcata cgatgcgaca       660
     aaggaaaatg atgtatttac tcctttggtg gataaattaa atgaatattt ttcaccgcaa       720
     cgtaacgccg tattcgaaag gcacatgttt cgcagcatgg tgccccgcca aggtgagtgc       780
     ttcgccgagt tcttgctgcg gctaagacaa caagccagta aatgctcttt tggagccacc       840
     aagaccgaaa tagaggaaat ctgcatcgct gataaaataa ttgatgcctg ggctaagact       900
     gcgttgaaaa agaagctatt agaagcggag ctcaagctgg aggagataat aaatacttgc       960
     acagttgaag agcaagtgaa tcagcaatca gaggcaatgg tgattccgtc ggatgccgat      1020
     attgtgaaga aaattgcggt ccaaacaaaa agaaatgaca ggacgaatga tgtgtgtggc      1080
     cggtgtggag cagcagacca tgatgaacgc agtatggcat gcccggcaag aaactcaaaa      1140
     tgtaataaat gttcccggtt cggacattat gctcggatgt gtaagaccgc attgaagaga      1200
     cgttttggaa caccatatga taatcaacgc aagcgaccac gaacctcaca gttccaggtg      1260
     cgcgccattg atgaggagga gactaagtgt cacagcgaca acagttggtc gaactgtttt      1320
     aaaataactg gtgaaccaga aggagaagaa accgtatcat gtctgttggg ggatcccagc      1380
     tgcaaatgat aattgactcc ggatcacggt acaacctgat aagccttggc gattggctgc      1440
     aactgaatag tgtamatgcg acagtgttca atgttcgtam caactcgtct acccagtttc      1500
     gagcctatgc ttcggatgac gtgctgaggg tgactaacgt ttttgaagct ccgataagaa      1560
     ttcaggaaag accagagatg attgctacat tttatgtaat tgaaaatggt agacaatcgt      1620
     tactaggacg ggacacagcc gtacaactca atgtcctaaa aattggttta ggcgtaaata      1680
     gagtggattc gtgcgcacat tttccgaaat ggaaagcttc acctgtgaga ttggccatag      1740
     accacaatgt gagaccagtg cagcagccaa tgcggagatt tccgactgcg ttagaagatc      1800
     gaattgcaga aaggataagc caggctgtgc agcaagacat tatagagcca gtccatggac      1860
     cgagttcatg gatttcacca gttgtaattg cgtataaagg aagcggcgag ataaggctat      1920
     gtctggatat gcgaagggcg aatttggcca tctcgaggga aaactaccca ctgccaacat      1980
     tcgacatgtt catgaccaaa ctacgggagg cgagatgttt ttccagactg gatttgaaaa      2040
     atgcttatca ccaattggaa ctcgatgagt caagtcggca gattaccaca tttattacac      2100
     acaagggact atttcgatat aaaagactgt ttttcggagt taattcggct ccagaaattt      2160
     tccagaggcg gctggaagaa ttgttagcag gctgccccaa tgctctgaac tatattgacg      2220
     atgtcatcgt cttcggcaaa aatgaggagg aacacgacaa ggcgctaact gcggttctga      2280
     aaatctttga tacccacaac gttgttttga ataagcaaaa atgtgtgtac aaaacaacaa      2340
     aactcaagtt tcttggccat attctatcgg accatggtat cgaagcggat ccggagaaag      2400
     ttaaagtgat cacagacttc cgtgctccga aaactaagga ggagacaagg agtttcctgg      2460
     gcctcgtaac atacgtgggg aaatttatac ccgatctcgc caacacgacg gagccactga      2520
     gaagattaat aaaggcgaat accaaatttg attggaccaa caaagaacag caagcctttg      2580
     atacgttaaa gaaacaagtc gtcgaggtga caaagctgtc atacttcaat aaaaatctcc      2640
     gtacatgtct tatagccgat gcaagtccag tggcactggg agctgttctg gtacaggttg      2700
     atgatcacaa cgaccatcat atcgtatcgt tcgccagtaa aagcctaact gatgttgaga      2760
     agagatattc gcaaacggag aaagaaagct tggcactggt atgggcagtg gagaagtttt      2820
     actactacct agctggactg gaattcgatt tgataacgga tcataagcca ttggagtcca      2880
     tcttcaaacc aacttcgaaa ccaccggcac gtatcgaacg ttggttacta cgcctacagt      2940
     cctaccgatt ccgagtcatc tataaagcag gaaaggaaaa catcgcagat tccgtgtcgc      3000
     gtctttgtca gcttacagaa gcagtagctt tcgactggca ggatgagcag aatatctttc      3060
     aaattgtagc caaaggagta ccaaagtctc taaccatatc ggaaatcatg gaaaaaagta      3120
     tgcaggacga agaaataatt gatgcaatga cctatcttag caccaactca tgggaggcga      3180
     actcatccag tccatattat ccgttccgat gggagttatc gacagttgga aatgtactct      3240
     tacgcggaac gaaaatagtt ataccaacaa tactacgatc gcaagtgctc gaactggctc      3300
     acgagggcca tccgggtgaa tcggctatga aacgaagatt acgttcaaag gtgtggtggc      3360
     caaggatcga ccgggaagca gaaggatttg ttaaggcctg tagagactgc atctccgtat      3420
     cgctagcaag taaaccagcg catatggatc ggcatgcgtt tccagcaggc ccttggcaat      3480
     gtgtcgcatc tgacttacta ggacctttac cgagcaacga ctatgtactg gtgttgatcg      3540
     actatttttc cagatacatg gaattaaagt ttataaaaac catttcgtcg aaggtgctga      3600
     tcgagcaaat ggaggagata ttttctcgtt tgggaatacc acgaacgctg agaaccgata      3660
     atggtcggca attcgtaagt ctcgaactcc aagatttttg tcggaccaac ggtattactc      3720
     aaataacgac accaccatat tggccgcagg cgaatggcga agttgaaaat atgaacaagt      3780
     ctttggtgaa acgccttaaa attgcgtggt cgaaagggaa agattataaa agagagatcc      3840
     aaaactttgt catgatgtac aacgtaacac cacatggaac cacaggagca gctccttcgg      3900
     aattgatgtt taaccggatc attagagaca agataccgga tgttcgagac gttgtgggtg      3960
     atgtcggtga atcctcggaa agagacttgg attgctggaa caaacagaag ggaaaagaga      4020
     aagcagacaa gggaagaggc gccaaagcat cggatatcca acccggagac aaaattgtgc      4080
     tgaagaatgt cttgtgccca cataagctga cacccacgtt tgatacaacc gagtacgtgg      4140
     tagtcaacag aaaagggaat atagtccaag tgcaaggagg agggaaaacg ctaaccaggg      4200
     atgtgagtca tttaaaaaaa attccagtta caggtaccca tgaagctgca acgacaaccg      4260
     atagtgttca gggcccgagc acacccagac aaacgtccca agcaccggaa aatgaagcct      4320
     gcgctcagga cgaaggattg aagctgaagc tgaaaaatat tggaggga                   4368
//
ID   Gypsy-31_DWil-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   scaffold_181154;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DWil_;
KW   Gypsy-31_DWil-I; Gypsy-31_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-248
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181154; Positions 3531096 3530849.
XX
SQ   Sequence 248 BP; 67 A; 55 C; 61 G; 65 T; 0 other;
     tgtggagacc cgtgccaagg gagctttcgg cggccggcga tcaacagaca gaaagccccg        60
     cggcacaagc cacggaatga gcttttgacg tacgaacttt gggtatcgct ttctccatcg       120
     atcttcactt tgattcttga cggcaagcgc agcatatatg cataagcagc acatgaataa       180
     attaatagct aattggttaa tggtaaactt gttgttgttt ctaatcgctg gaataccggg       240
     ttaataca                                                                248
//
ID   Gypsy-31_DYa-I repbase;    DNA;    INV; 7150 BP.
XX
AC   .
XX
DT   07-JAN-2012 (Rel. 17.09, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DYa_;
KW   Gypsy-31_DYa-LTR; Gypsy-31_DYa-I.
XX
NM   Gypsy-31_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7150
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1848-1848 (2012).
XX
RN   [3]
RP   1-7150
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-JUN-2021).
XX
DR   [3] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1037..2227
FT                 /product="Gypsy-31_DYa-I_1p"
FT                 /translation="MPNISKVKDLIKPTQITTRAVSKKKVVSEKEVQAGSL
FT                 SLRPRVPSASSNTDSSTTSSPPLTANMAINPVELVASMRIPDIIRFLPTYS
FT                 GDPLTLNEFINNVEEVILMIRGTDQTPYGQMLLRAIRQKIEGKANEAVIAA
FT                 GASLIWDEIKEALIRHCRDRRDEETLMSELFNLKQRQLPLQSLYEQITKIK
FT                 LALFRLIEAEETEALTIKVRQKVVSQTVLTTFLGGLRGNLGGIVGAWRPRD
FT                 LGEAYGVAIKERNLYFSEGSAYNQQRQPMRQNDRFRPNYNQYQNRDRDQFQ
FT                 NRAYNQYQGRDRYQYQNRDNNRYNRNTYENNNRNSRYPAILPNDNTPSTSN
FT                 AAAKKNANMNRPSTNGQRLFNIETNTKTNDTESSHNFEEDGNFRTGASKNK
FT                 QDS"
FT   CDS           2173..5613
FT                 /product="Gypsy-31_DYa-I_2p"
FT                 /translation="LRRGWKFSDRSLEKQTGFLSKFQLDANLPYIILSFQN
FT                 NNNLKFLVDTGAQGSFITPKFVPDNARIALEKPISISTVLQEHPISQMAIL
FT                 PIFEQVNDQREFPFLMFDFHQFFDGLIGMNILTQLPAIIDIAQLTFTLPNT
FT                 ILPLRVEPNRSSEVYEIKEESKSLIKVPVSVKEGPFLCEHIRLGDDFFITG
FT                 GIYRAHNNTGLIEVNNFSAEQKKFVLDSSLEVKEFNEDDFACINVMTNNIE
FT                 YRNEDHSSTLDAIRAEHLNEEEKQQLYRLCRRFTNLVVREGDKLSFTNQVK
FT                 HEIRTTDERPIFCRPFRFSPTESTEIHNQIDKLLQQNIIKHSHSPWSAPVF
FT                 LVSKKMDASNTKKWRMVVDFRKLNEKTIKDRYPMPNINDVLDRIGRAKYFT
FT                 ALDLASGYHQIEMDPNDTPKTAFTALGGHYEFIRMPFGLTNAPATFQRVMD
FT                 SVLADLXGVCCLVYLDDIIIFSPSLQDHITHLDAVFRRLSQANLKIQPDKS
FT                 EFLRKEIEYLGHIVTEDGIKPNPKKIAAVKAFPIPTTRKEIKSFLGLLGYY
FT                 RKFIRDFAKITKPMTQQLKGKAPVLVSEDFKKSFETCKTLLCNDPLLKYPD
FT                 FKKPFILTTDASNVAIGAVLSQGTVGSDRPVSFASRTLNPREENYSTVEKE
FT                 MLAIIWATKYFRPYLFGQKFKIITDHRPLTWLMNFKEPNSKLVRWKLQLME
FT                 YDYEVEYKKGPQNVVADALSRVRIETNCISNSGSHDEIIRTADRPLNEFKS
FT                 QYTFELGNEDRTRNYILFKNKFRRSIIKVKFDLSIITEILKEILTPKRLHA
FT                 IFASDPIFDLIKESHAQHFKEYELIRCKSLLMDVTGREEQEQAIKEYHVKN
FT                 NHRGIEETLNHLKRTLYFPYMKQKITQLVNRCDTCQTLKYDRRPPKPEFQK
FT                 TETPGVPLQIVHMDIYTINGRTILTLIDKFSRFASAYTIPARSCINVVKSL
FT                 RHYFCVVGIPTKLVFDQGTEFSGKIFTDFCKQYNIETHMTSFQQSSSNSPV
FT                 ERLHSSLTEIYRIIFENRKAEKLDCDHEEILCETLITYNNAIHSATKFTPF
FT                 ELLSGRTHVFNKEVTFDTEHDYLQKLNEFQNTLYPRVKALVQQKMEARINR
FT                 ITLVSAKKQKLHKAKIRDKIIKKQIPIDLTGSLPSQHRT"
FT   CDS           5580..7148
FT                 /product="Gypsy-31_DYa-I_3p"
FT                 /translation="SYRFTSIAAQDLKVQNLGNDTPLLKINLGQARVVQSH
FT                 KFLIHRINLQEFIDGTVNFQRAINKLERNIQSEYAIESLSTKVGQLQARVE
FT                 KLLPNRRQKRGLFNGLGNVIKIVTGNLDDSDGRRIQDSLKTISENQKDLTV
FT                 NVNKQEVINNDILNRFDNITEHINREQQIINSFLNSYKDSMFKTVNAEHHL
FT                 LHTMQYASRINMNLEILSDHLKNIEDSLLLAKLKIVPTFIVSAEEVEIIRK
FT                 ELNDPELRELSDEYIFQMLELDTFMIGIKIHFRIRIPTFKQHFYKFTHIIP
FT                 LPINESKFLVVPNYMAYLNAKEVYYFSEVCNKIYKYYICENSMSIKDDVKA
FT                 ECLSGILTMETANCKTKDISSQEIITEIEPAHILILNTQNTVIESNCTTRI
FT                 SIKGSALVTFENCKVLINQIPYDKELSSYEEKLDVHIPIIKNINFTESTED
FT                 INLQKLNLRSIHASNSIIYWKNFTTTNLGALYILLIVGATTTTCLIYARRR
FT                 VEFTTIPEPSFVTTTPSLWPSLQSGRG"
XX
SQ   Sequence 7150 BP; 2527 A; 1325 C; 1455 G; 1837 T; 6 other;
     ggcgcagccg acgactacga accgggatgg gtcgcttcat aatgatgtta ttgtaagctt        60
     acacacacac aaattgatgg ttatctgtga gtagtaaaat tttcgttcta aattaaaata       120
     tctgagtata aagtaatact aaagaaaaca aggtgcgaca tgggaagcaa aaaaagaaag       180
     agagcgagga aagtgtcgtt gtggttaaaa gtgataagtg tgcagacgta aaaaaaaatt       240
     atttggccaa acaaagaaag aatttggtga taatataatc gaacaaagaa aaagaataaa       300
     naattataaa taatagagat tgtaaagaat acgaaataat tttatactgg ccaaatgatt       360
     tttgatatcc acagtgcatg cgacactttt gatgaagtaa taagaaagaa aaaaggaaaa       420
     caaaggaata caaagagaaa atttaaatan atcggtaaat aactctgcag tcccatcgtg       480
     tgttctgcag atcgttgcaa tattttcttt tatgtaattg angaataaaa agaaaaaaga       540
     caaaggaata caagagagat caaagataaa tacatngagt cagctcctgc aagtcccatc       600
     gcgtgttctg cagagggctg ctcaaagtgt gaggggtact tgtaaagagg gccgtactct       660
     cccatgtcgt agcttaaaag gaaggaactt ccaacagtat agaattagac tgattatttt       720
     ctattatttt gctcattatg tttgctttta aatacaaaaa gaaagagaga agagcctaag       780
     aaaatacaaa tttacgctgt cttggcctta aatatttacg attacgaatt ttataccttc       840
     acgggtaaaa atcaagaaca caacacttga gagcctcaac cacgacctta cattactaaa       900
     tatataaatt ctacacatca tagtacataa gtataataag tacacttgtt aagaattatt       960
     cacaattgag agagttattc agagttattc acaattgagc gtgaccttct ttaaagatat      1020
     aataaaagtg gacttaatgc ctaacataag taaagttaaa gatctaatta agcccaccca      1080
     aattaccact agagcagtca gtaaaaagaa ggttgttagc gagaaggaag tacaggctgg      1140
     ttcattgtcc ttaagaccta gagttccgtc cgctagttca aatacggatt cgagtactac      1200
     ctcatcgccg cctctgaccg ccaatatggc cataaatcct gttgaattgg tggcatcaat      1260
     gaggattccg gatataattc ggttcttacc gacttattct ggggatccgt tgacattgaa      1320
     tgagttcatc aacaatgtgg aggaggtaat cttgatgatt agaggtaccg atcaaacccc      1380
     ttatggccaa atgttactaa gagcaattag acagaagatc gaagggaagg ctaatgaggc      1440
     agtgatcgca gcgggagcaa gtctaatttg ggacgagatt aaagaggccc taattagaca      1500
     ctgtagggac agaagggacg aggagactct aatgtcggag ctatttaatt taaagcaaag      1560
     acagttgcca ctacaaagtt tgtacgaaca aattacgaag ataaagctag cgctcttcag      1620
     actaattgag gcagaagaga ccgaagcact aacaattaaa gttaggcaga aggtcgtttc      1680
     gcaaacagtc ctcacgacat ttcttggggg actgcgggga aacctcggtg gtatagtcgg      1740
     agcctggagg ccgcgagacc tcggggaagc ctacggcgta gccatcaaag agaggaattt      1800
     atatttttct gaaggttcgg cgtacaatca acaaaggcaa ccaatgcggc agaacgatcg      1860
     ttttcgccca aattacaatc agtaccaaaa tagggaccgg gatcagttcc aaaacagggc      1920
     ctataaccag taccaaggta gggatcgtta ccaataccag aacagggaca ataatcgcta      1980
     caatcgtaat acgtacgaga acaataacag gaactctaga tatccagcca ttttgccaaa      2040
     cgataatacg cctagtacat caaacgctgc ggcgaagaag aacgctaata tgaacaggcc      2100
     aagtacaaac ggacaaagac tgtttaatat tgagacaaat accaagacaa acgatactga      2160
     atcgtcacat aacttcgaag aggatggaaa ttttcggaca ggagcctcga aaaacaaaca      2220
     ggattcttga gtaaatttca gttggacgct aacttgccgt atataatttt atcatttcaa      2280
     aacaataaca acttaaaatt cctggtagat acgggagctc aaggctcttt tatcacccct      2340
     aaatttgtac cagataatgc aagaattgct ttggaaaaac ccatttctat tagtacagtt      2400
     ttacaagaac acccaatttc acagatggca atattaccca ttttcgagca agttaatgat      2460
     caaagagaat tcccttttct aatgtttgac tttcaccaat ttttcgatgg attaataggc      2520
     atgaatattc taacccagtt gccagctata atcgacatcg cacaattgac tttcacgttg      2580
     cccaatacaa ttctgccttt gagggtagag cctaatcgtt cttcggaggt ttatgaaatt      2640
     aaggaggaat ctaaatcntt gatcaaggtt ccagttagtg tcaaagaggg gccatttttg      2700
     tgtgaacaca ttcgtctcgg ggacgatttt ttcatcactg ggggaattta cagggcgcac      2760
     aacaacactg gactgatcga agttaataat ttttctgcgg aacagaagaa gttcgttttg      2820
     gattcgagtt tagaggtaaa ggaatttaac gaagacgatt tcgcctgcat taatgtgatg      2880
     accaataaca tcgagtacag gaatgaggac cattcttcca cgctagacgc cattcgtgcg      2940
     gagcatctca atgaggaaga aaaacaacaa ctttatcgac tatgcagaag atttacaaac      3000
     ttagtagttc gggaggggga taaactctca tttaccaatc aggtgaagca cgaaataagg      3060
     acgacggacg aaagacccat attttgtaga ccatttaggt tcagtccaac ggaatccacg      3120
     gagatccaca atcagataga taaactgttg cagcaaaaca ttattaaaca cagtcattcg      3180
     ccgtggagcg ccccagtgtt tcttgtttct aagaagatgg acgcttcaaa tacaaagaaa      3240
     tggagaatgg tagtggattt caggaaactg aacgaaaaga cgattaagga taggtacccc      3300
     atgcccaaca ttaacgatgt actcgacaga atcggtaggg cgaaatattt cacggcgttg      3360
     gatttggcca gcggttacca ccaaattgaa atggatccca atgacacgcc taaaacggcc      3420
     ttcacggcat taggggggca ttacgagttt attcgtatgc cattcgggct cacgaacgcc      3480
     ccagcaacat ttcaaagagt gatggatagc gtgttagccg acctcantgg agtatgctgt      3540
     ttagtttacc tagatgacat cataattttt tcgccatcct tgcaagatca catcacccat      3600
     ttggacgcag tgtttcgcag attaagtcag gctaatttaa aaattcaacc agataaatcg      3660
     gaatttttaa ggaaggagat cgagtatttg gggcatattg tcacggagga tggaattaag      3720
     ccaaatccta agaagattgc ggcagtgaag gcgttcccaa ttccgactac cagaaaggag      3780
     atcaaatcct tcctaggcct tctgggatat tataggaaat tcattcggga ttttgccaag      3840
     atcaccaagc caatgacaca acagttaaag ggcaaggcac cggtattagt atcggaggac      3900
     ttcaagaaat cgtttgaaac atgtaagacc ctgctgtgta acgacccttt gttaaaatac      3960
     cccgacttca agaaaccctt tatattgaca acagatgcta gtaatgtggc aataggggcg      4020
     gtactgtcac aaggtacggt aggctcagac aggccagttt cctttgcgag tagaacacta      4080
     aatccgcggg aagaaaatta ttccaccgtg gagaaagaaa tgctagcaat catttgggcc      4140
     accaaatatt tccgtccgta cctatttggt caaaaattta agatcattac ggaccataga      4200
     ccattgacct ggttaatgaa tttcaaagaa ccaaattcaa agttggttcg atggaaactt      4260
     cagttgatgg aatacgacta cgaggtagag tacaagaagg gaccacagaa tgtagtagct      4320
     gatgcgctga gtcgcgtaag aatagagaca aactgcattt ccaattcagg ctcgcacgat      4380
     gaaataatta ggacagccga tagaccatta aatgaattta aatcacaata cactttcgag      4440
     cttgggaatg aggacaggac tagaaattac attttattca aaaacaaatt tagacgttcg      4500
     ataattaaag tcaagttcga tttatctata ataaccgaaa ttttgaaaga aattcttaca      4560
     cctaaaagat tacacgctat tttcgcatcc gacccaatct ttgacctaat aaaggaatca      4620
     cacgcccaac attttaagga gtacgaacta atcagatgta aatcccttct aatggacgtt      4680
     actggtaggg aagaacaaga acaggctatt aaagagtacc atgtaaagaa taatcatcgg      4740
     ggaattgaag agaccttgaa tcacctgaag agaaccctgt attttccgta tatgaaacag      4800
     aaaatcaccc agttagttaa taggtgcgat acgtgtcaaa ctctcaagta tgacagaaga      4860
     ccacctaaac ccgagtttca aaagaccgag actccggggg tgccgttgca gattgttcat      4920
     atggatatct ataccataaa tggacggacc atcctgacat tgattgacaa attttcaagg      4980
     tttgccagcg cttatacaat cccagctagg agttgtataa atgtggtcaa atccttaaga      5040
     cactattttt gtgtcgtggg tataccaaca aagctggtat ttgatcaggg cacggaattc      5100
     tctgggaaga tttttacgga tttttgtaaa caatataata tcgagacaca catgacatcg      5160
     ttccagcaat cttctagcaa ttctccggtg gaaagactac attcatcgct cactgaaatt      5220
     tacagaatta tcttcgaaaa caggaaggct gaaaagctgg actgcgacca cgaagaaatt      5280
     ttatgcgaaa cgttaattac atataataac gccatacatt cagccacgaa atttacgccg      5340
     tttgaattac tttcagggag aacgcacgtg ttcaataaag aagttacgtt cgatacggaa      5400
     cacgattact tacaaaaact aaatgaattt caaaacacat tgtaccctag agtcaaagct      5460
     ctggtacagc agaagatgga ggctagaatt aacaggatca cactagtttc agcaaaaaaa      5520
     caaaaattac acaaagcaaa aatcagagac aaaattatta agaaacaaat ccctattgat      5580
     cttacaggtt cacttccatc gcagcacagg acttaaaagt ccagaattta gggaatgata      5640
     cacccctact aaaaattaac ctgggacaag caagagtcgt tcagtcccat aaattcctta      5700
     tccatagaat taatctccag gaatttatcg atggtacggt caacttccag cgggctatta      5760
     acaagctgga gaggaacata caatcagagt atgcaattga aagtttgtca acaaaggtgg      5820
     gacagttgca ggctagggtg gaaaaattgc tgccgaatcg gagacagaag aggggattat      5880
     tcaatggttt gggaaatgtg attaagatcg taacagggaa tctagatgac tcagatggac      5940
     gcagaattca agatagttta aagacaatct cggagaatca gaaagacctc acagtaaacg      6000
     taaacaaaca ggaggtgatc aacaacgaca ttctaaatag attcgacaac ataacggaac      6060
     acatcaatag ggagcaacag ataattaata gttttttgaa ttcctataaa gatagcatgt      6120
     ttaaaacggt taacgctgaa caccatcttt tacatacaat gcaatatgcc tctagaataa      6180
     atatgaattt ggagatttta tcggaccatt taaagaatat agaagacagc ttattattag      6240
     ccaaactgaa aatcgtaccc acttttattg tatctgcgga ggaagtagaa ataatccgaa      6300
     aagaattaaa cgacccggag ttacgggagt tatctgatga atatatattt caaatgttag      6360
     aattagacac tttcatgatt ggaattaaga ttcactttag gataagaata cctactttta      6420
     agcaacactt ttataagttc acacacatta ttccactacc catcaatgag tccaagtttt      6480
     tggttgtacc caattatatg gcttatctta atgctaagga ggtctattat ttttccgaag      6540
     tatgtaacaa aatatataaa tattatattt gcgaaaactc aatgtctatc aaagatgatg      6600
     tcaaagccga atgcctcagt ggcatactca ctatggagac ggcaaattgt aaaacaaaag      6660
     atataagtag ccaagaaata ataactgaaa tagaaccagc acacatttta atattaaata      6720
     cacaaaacac agttattgaa tctaattgta ccacaagaat ttccataaaa ggttccgctc      6780
     tagtaacgtt cgaaaactgc aaggttttaa taaaccagat tccttatgac aaggaactat      6840
     catcatatga ggagaagtta gacgtccata tcccaattat aaagaatata aatttcaccg      6900
     agagtacaga agatattaat ttgcaaaagt taaatttaag atctatccac gcttctaact      6960
     caattattta ttggaagaac tttacaacaa caaatctggg agcattatat atattattaa      7020
     tagttggagc aacgacgaca acatgcctta tctacgcgag aaggagggtg gagtttacta      7080
     caataccaga gccaagtttc gtgacgacaa ctccttcgct gtggccgtca cttcaatccg      7140
     ggaggggagg                                                             7150
//
ID   Gypsy-31_DYa-LTR repbase;    DNA;    INV; 540 BP.
XX
AC   .
XX
DT   07-JAN-2012 (Rel. 17.09, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_DYa_;
KW   Gypsy-31_DYa-LTR; Gypsy-31_DYa-I.
XX
NM   Gypsy-31_DYa-LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-540
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1849-1849 (2012).
XX
RN   [3]
RP   1-540
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-JUN-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 540 BP; 171 A; 153 C; 97 G; 119 T; 0 other;
     agttaccggt tccaaccggc acacaaaccc tccagcgaag ccaccccggc ttaccctgga        60
     attggtacag agtaaccaga gtataagcaa tggtttaaat taggccaccc aacgaccgtt       120
     cggcgaacgg ccgttgtcaa cagcggggaa atgtttacat gacatttaca caggaaaccc       180
     ccacttctcc ggactgggta ataggagcac aacatcagca agaattgacc cactcaagaa       240
     tagaccacac agcactccac attttcggca acccgactca cccacttaag agtgtgcgac       300
     gcagcattta actataacac ttacacatgt agtatttaag accctatgta tttcctatgt       360
     acttttctca gcggaggtct cattgtgacc gccgctgcaa ataaagatca gattaatttt       420
     tacattcgaa caagtaacac gccttcttat caaaagacca aactcggaac ttcggaccaa       480
     ccttcaacat actcgcagaa ccaccaacat tgttcaggac aagcatcctg aatcacaact       540
//
ID   Gypsy-31_HeAr-I repbase;    DNA;    INV; 4707 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4707
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5578-5578 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..4083
FT                 /product="Gypsy-31_HeAr-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLQMMKHMSDRIATIPDTKVKINDVFLPSYDPDANIG
FT                 VREWCKHVTTAMETYNLSDYDVRMKVGSLLKGRARLWVDNWLVSTSTWQEL
FT                 RDVMITTFEPENRYSRDIVRFREHTYDNSKDIAQFLSQAWMLWRRVTRDKL
FT                 SDDDAVEAVIGCVGDERLRIELLNARATSVPELISVASSIKRSKRPYPSSS
FT                 NIQQGPVKRQRFLDKPSLYCQHCKKPGHDTRDCRYRNKTDNPQLRHHDDKT
FT                 VPQKDNKPTCTFCSRIGHTYETCYKRERTIVSNVNCVGTPKLNRIPVLIGG
FT                 LKIFAIFDSGAECSVIRESVASKLPGKRTNVVNYLKGLGQFTVVSLSTLIT
FT                 VCVIDDIRVELHFHIVPDYEVCSDILIGMNLMQDTNLSVIVNSKGVTLIHQ
FT                 PAVFHMRLQSEKFDNLDCDLTDGDQINELKLLLAKFEHLFIRGYPHTRVNT
FT                 GELEIRLKDPNKCVERRPYRLSPIERQKVRDIVSELLEHNIIRESKSPFSS
FT                 PIILVKKKNGKDRMCVDYRELNRNTLRDHYPLPIISDQIDQLAGGYYFSTF
FT                 DMAAGFHQIPISEGSIEKTAFVTPDGMYEYLAMPFGLSNACSVYQRCMNRA
FT                 LADLLNSPDQVCQVYVDDVLTKCSEFAEGLSRIERILIALQNAGFSINIEK
FT                 TAFFKRSIEYLGNIITNGQVSPSPKKVEALTKAPIPRTAKQVRQFNGLAGY
FT                 FRRFIPNFSRVMVPLYELTKKDAKWEWNERHDEARNKIILHLSTAPTLALF
FT                 QENAPIELYTDASSLGYGAVLVQVIGGRQHPVAYMSQRTTDAESRYHSYEL
FT                 ETLAVVRAVKHFRHYLYGRKFKVITDCNALKASKHKKDLLPRIHRWWAFLQ
FT                 NYEFEVEYRKGERLQHADFFSRNPTIEMAINIMTKDTEWLQIEQRRDDTLR
FT                 PVINSMTTDNPAPGYVLEEGVLKKLLADPSILGTCKPTVVPKSFQWSLINS
FT                 FHTSLQHPGWEKTLQKLRDSYWFPNMSTIVRRFVDNCVICRTSKGPSGAIQ
FT                 AQLHPIQKPTAAFQVIHMDITGKLGTRNAEGQDEYVIVIIDAFTKYILLNY
FT                 SNDKSQSSSLAALKRVVHLFGTPVQVVVDGGREFLGEFKAYCDCFGINLHA
FT                 IAPGVSRANGQVERVMSTLKNALTMIRNYDTENWQTALDALQLAFNCTPHR
FT                 VTGCAPLTLLTRRKHTVPPELLRLVDIDNESIDFDTLDQHVQRKMAAAAEY
FT                 DKHRFDRNKAKLRPFQRGDYVLIKNNPRNQTSLDLKYSEPYEIYRILDNDR
FT                 YMVKRVTGRGRPRKVAHDQLRRAPQPGEQETVSTGANDDTEQQTTAQIVDT
FT                 PDPPSTSQTTQLLDA"
XX
SQ   Sequence 4707 BP; 1405 A; 1065 C; 1055 G; 1182 T; 0 other;
     tcagaagtgg gatcaccacc cacatctgct cgtccttctg tttcaaacaa tgaacatagt        60
     gatgcttctg ttggcggggt cccagtggaa tttttcgcgc aaatgttgca aatgatgaag       120
     cacatgtccg atcgtatagc aacaataccg gacacaaaag ttaaaatcaa tgacgtgttt       180
     ttgccatcat atgatccgga cgcaaatata ggagtgcgag agtggtgtaa gcacgtgacc       240
     acggccatgg aaacctacaa cctaagcgat tatgatgtca ggatgaaagt cggtagttta       300
     ctcaaaggtc gtgcaaggtt gtgggttgac aactggcttg tttcaacctc cacgtggcag       360
     gaattgcgtg atgttatgat aacaactttt gaacctgaaa atagatattc tcgtgatata       420
     gtccgttttc gagaacatac ttacgataat tcaaaggaca tcgcgcagtt cttatcacag       480
     gcttggatgt tatggagacg tgtcactagg gataaattat cggatgatga cgcggttgag       540
     gctgtgattg gttgcgttgg agacgagcga ttgagaatcg agttgttgaa cgccagggct       600
     acttcggtcc cagagttgat ttcggtagct tcctcaataa agcgcagtaa gcgaccttat       660
     cctagttcat caaatataca gcagggccct gtcaaacgac agcgattctt ggataagccg       720
     tctttatatt gtcaacattg taaaaaacct ggtcatgata ctcgagattg ccgttaccgt       780
     aataaaactg ataaccctca actgcggcat catgatgata aaacggttcc tcaaaaggat       840
     aataaaccga cctgtacgtt ctgctcacga ataggtcaca catatgaaac ttgctataaa       900
     cgtgaacgaa caatcgtctc gaatgttaat tgcgtaggta caccaaagtt aaaccgcata       960
     ccggtgttga ttgggggttt aaaaattttc gcaattttcg atagcggggc ggaatgttcg      1020
     gtaatacgcg aatcggttgc ttcaaaatta ccgggtaaaa ggacgaacgt tgttaattat      1080
     ctaaagggtt taggacagtt tacagtagtg tcattatcaa cgttgataac cgtttgtgta      1140
     atcgatgata taagggtcga actccatttt cacatagttc cggattatga agtgtgttca      1200
     gatattttga taggcatgaa tcttatgcaa gatacgaatt taagtgtgat agttaattca      1260
     aaaggcgtga cattgattca tcagcccgcg gttttccaca tgcgattaca aagcgaaaag      1320
     tttgacaatt tggattgtga cttgacagac ggtgatcaaa tcaacgaact taaattgtta      1380
     ttagcaaaat ttgaacatct ttttatccgg ggttaccctc acacacgcgt taataccggc      1440
     gagctcgaaa tacgtctaaa ggacccaaac aagtgtgttg aacgtaggcc atatagattg      1500
     agtccaatag aacgacaaaa ggttcgtgat attgtaagtg agttacttga acacaatatt      1560
     attcgagaga gcaagtcacc tttctccagt ccgatcatat tagtcaaaaa gaaaaacggc      1620
     aaagatcgca tgtgtgtgga ctaccgtgag ctgaatagaa acactctgag ggatcactat      1680
     cctctgccta taatttccga tcaaatagac caattagcgg ggggttatta cttctctacg      1740
     tttgatatgg cagcggggtt ccaccagatc cccatctctg aagggtccat tgaaaagact      1800
     gccttcgtaa caccggacgg catgtacgag tacttggcca tgccattcgg tcttagtaat      1860
     gcatgttccg tttaccagag gtgcatgaat agggctttag ctgacctcct aaattcacct      1920
     gaccaggtat gccaagtcta cgtcgatgac gtacttacaa aatgtagtga atttgcagaa      1980
     ggattgtccc gtatcgaacg gatacttatc gcgttacaaa atgccgggtt ttctataaat      2040
     attgaaaaaa ctgccttctt taaacgctct atcgagtact tgggcaatat tattacaaac      2100
     ggacaggtta gtcctagccc aaagaaagtg gaggctttaa cgaaggcacc tattccacga      2160
     acggctaaac aagttaggca attcaatggc ctcgccggat actttcgtcg tttcattccc      2220
     aatttctcgc gtgtaatggt accgctttat gagctaacaa agaaagacgc aaaatgggaa      2280
     tggaacgaaa gacacgacga ggccagaaat aaaatcatac tgcatttgtc tactgcgcct      2340
     acccttgcat tatttcagga aaacgcacca atcgagcttt acactgatgc gagcagcctc      2400
     ggctacggcg cggtactcgt tcaggtcatc ggaggtcgcc agcatccagt cgcgtacatg      2460
     agccagcgta ccactgacgc agagagccgc taccattctt acgaactcga gacgctagca      2520
     gtggtgagag cagtaaagca ttttcggcat tacctatacg gccgaaaatt caaggtaata      2580
     acagactgta acgccttgaa agcgtctaag cataagaagg atttactgcc acgaattcat      2640
     cgctggtggg ctttcctgca aaactacgag ttcgaggtcg aatatagaaa aggtgagcga      2700
     ctgcagcacg cagacttttt cagcagaaac cctacaattg aaatggcgat caacattatg      2760
     accaaggaca ccgagtggct gcaaattgaa caacgtcgtg acgacaccct tcgtcctgta      2820
     ataaacagca tgacaaccga caacccagct cccggctacg ttcttgagga aggcgtgctg      2880
     aagaaattac tcgcggatcc ttctatactc ggtacgtgca aacctacagt agtaccaaaa      2940
     tcattccagt ggagcttgat aaactccttt cacacatctc tacaacatcc gggatgggag      3000
     aaaactttac aaaaactcag agatagttac tggtttccta atatgagcac cattgtaaga      3060
     aggtttgtag ataactgcgt tatatgcaga acctcgaagg gaccttcagg cgcaatccag      3120
     gcacagctcc acccgataca aaaacctact gcagcatttc aagtaatcca tatggacatt      3180
     accggcaaac ttggtacgag aaacgctgaa ggtcaggacg aatatgtgat cgttattatt      3240
     gacgccttca ccaaatacat actacttaat tactctaatg acaagagtca aagcagcagt      3300
     ctcgcagcgc tgaaacgagt cgtgcattta ttcgggactc cagtccaggt agtggttgat      3360
     ggcggtcgag aatttcttgg cgaattcaaa gcctattgcg actgttttgg tatcaatttg      3420
     catgctatag cgccaggagt aagccgagca aatgggcaag tagaacgagt aatgagtacc      3480
     ttgaaaaacg cactaacaat gataaggaac tatgacactg aaaactggca gacggccttg      3540
     gatgcccttc aacttgcatt taattgcacc ccacacagag tgacaggatg cgcgccactt      3600
     actctcctga cacgccgtaa gcacaccgtt ccaccagaac ttttaaggtt ggtagacatt      3660
     gataacgaat ccatcgattt tgatacgctc gatcaacacg tgcaacggaa aatggcggct      3720
     gcagctgaat atgataagca ccgtttcgac agaaacaaag ctaagctgcg cccttttcaa      3780
     agaggagact acgtcctcat caaaaataat cccagaaatc aaaccagctt ggacctgaaa      3840
     tacagcgagc catacgagat ttacagaata ttggacaacg accgctacat ggtaaaacgt      3900
     gtaaccggca gagggcgccc acgcaaagtg gcgcacgatc agctacgccg ggctccacag      3960
     cctggggaac aagaaaccgt gtcgacgggt gccaacgatg acaccgaaca gcaaaccaca      4020
     gcacaaatag tcgatacacc ggatccacca tcaacgtcac aaaccacaca gttattggac      4080
     gcttaagtta gtgtaatatt gattagaagt ttagtgtaac attttaagag tgtgcttagg      4140
     tagttcagta tcatttattg tggatgttaa attctgtgcg acacgtatcc ttttctcctt      4200
     gcctaacttg tcattttcag agcctctggg gaccacggtc agaaacataa ggcccaggcc      4260
     ccagcatcga cctacccgga tcctttagga cccctgtgga ccacggcgta cgagaccgct      4320
     cagcgccaca gcagcaaatc cctgtgagct tcatcaataa actatgggta acagattgca      4380
     taactgtcag agcttctggg gaccacggtc attggaaaga cctaggccct agcatcgacc      4440
     ttccttcatc tcctagagcc tctgtggacc acggcgtaca tgaccgctca gcgccacagc      4500
     acgcctgttc gagaaatata atcatgcaag tatgcgttgg tcatttgcat gtcaacaaat      4560
     cagaaatgta atcaagttac taactacttt gctcacattc ctttatattc ccttaacttt      4620
     atgaactcta tgatctgttg tgtaccaaaa tctgttttac aagaaccgtg actggtgctg      4680
     agcacgcacc gtctcgcaga atggccg                                          4707
//
ID   Gypsy-31_HeAr-LTR repbase;    DNA;    INV; 737 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-737
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5608-5608 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 737 BP; 215 A; 98 C; 146 G; 278 T; 0 other;
     tgtcgacgca agtccatggt aattaaccag atgtaattgt tttgattatg aaatcgatta        60
     ttgtgatgaa tcaattggtc tttttagtta ttaattagtg ttatgatttt tggaatgcac       120
     tgactatatt tttgcgttag aataaaaacc ttaaattaat cgatgaaatt attatgagtt       180
     ttgtttgaca gttgaaacat tcgccgccat ttgtagaccg gatgtttcaa ctgagattaa       240
     gatttaaaaa ttaatgaaat tgttcataat tactttcgaa atgtttaatt aatttaagaa       300
     ttatttttgt aattaaaagt taattattta aagaagttgc aatttaaata gtgcgttgac       360
     gttttcccgc ccgacgccat ctttggtttt aaattcgatt ggcgcgcgaa actgcgagag       420
     acgaataaaa tcactttttg ttggagcgcc gggcggttaa gacgtggtgt attgcagtct       480
     tgtgagtacc ttgctcttct tttattattg taattgtgac gtgataattg tgattgtgat       540
     tttgaatatt actgattata aaacgtgaac tgtgattata aaactagatt gctctctggt       600
     attgtaaata aatcgtttag tgtgtttatc gttgtgtttt attgtttgca atgagtgcgc       660
     caaataatga aggcagtgac gttagcaatg ctgacgtcac tgcttttaaa gattccactg       720
     gaccaaaccc ctcgtca                                                      737
//
ID   Gypsy-31_LMi-I repbase;    DNA;    INV; 8748 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8748
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2399..5638
FT                 /product="Gypsy-31_LMi-I_2p"
FT                 /translation="MQPLITISVKDVVLECVLDTGSVVSVMSDSAFGRCQT
FT                 VGTWPVLPLQRTKVKGALVGRSVDVKRQAEVVFECQGHEFCVNFIIVPSLT
FT                 VDVLLGVEFLLAHNALFDFSEGVVRLCKGNAIITLKFDECAAKVDSADRYC
FT                 QFLYDFCPANATGSFSSCGEDTVVLYCGIDDENALSNEIAKKVELIDDASG
FT                 TAKSELSQILREHSSVFSETPGTIKGFVYRFKVREHRKFFVRPYPIPWVYK
FT                 EQVEEEIKRMLAEGVIEQAVSSYNNPLLVVPKRDNSIRLVLDSRQINTVIE
FT                 PETDRPQTLDELLQQFHGVRVLSSIDLRSSYWQIELDPSCRPYTAFLCFGT
FT                 CYQFRKLPFGLNVSSAAFIRGFNSILPDDLRKRVTTYVDDVLIAENSWEDH
FT                 NYVLKRLLQVFGQSGVTVNLMKSEFGRREVKFLGHIISGDGILPDPTKLDA
FT                 IREFPVPSTKKQVRAYLGLINFYKRFLSIESIATPTLCGLTSKNKAWKWTA
FT                 SAQKEFEDVKRALLAAPLLAHPDLSKDFCLGTDSSKVGIAAELFQEIEENG
FT                 VVQRKTIAFASRVLNKCERNYSVTELEALAVVFGFLKFRGYLFGRTTKVYT
FT                 DHRALEFLMSAKLTHGRLARWALFLQEFRFTVVHIPGSENVVSDALSRSPV
FT                 GLTQGTNDELNENNFSVLYLRGVAFENFITASLQDIAREQDKDEILRDVKA
FT                 KWRDQTHPSIRHYYLIRRNILFRRSDPGQSNWVVCIPDEWVNKLIWFTHLS
FT                 YAHYGPRKCYQKLRDTCYFLNMEKRIRKVLATCKLCQKSKPPTVTHQAPLF
FT                 PIIPSRLRELAAVDLFGPLPRTMNGYSYIFVAVELTSKFVTLTPLRRATGR
FT                 SVAQAFIKDFLRQVGPVEKVIADNGSQFRSPVWKEMLRRRRMRPVFISVYH
FT                 PASNPCERVMKELGKLCRLYCYRRHRAWDRYIQGFQHVLNDLPNSSTSMPP
FT                 VLVLKNQHPEDKVRETVPLDPPVRLRHRDVIERALANIRDAAERRRRQDKV
FT                 SRVVRVFEVGQKVLVRSRRLSSKRHSLTKKFFPLFVGPYRVRRIAHENAVE
FT                 LETLRTRKSRGLHHVSSLRFYRE"
FT   CDS           join(351..971,975..1469,1457..1711)
FT                 /product="Gypsy-31_LMi-I_1p"
FT                 /translation="MMENSSALSVSTRSRRLNQSEDREKSSRSDLSTEREK
FT                 VANTDGRVPVENATCLNVDATGSEGRGEQSEPHTNMPVSATSQTSSTSVTR
FT                 PVCVSDTTLSDIMAFMREIKAGMKAEVGSIMEAQNASVQAELIKVSAQCRE
FT                 AQSNTVQVINNNLDGLRTDIVRLVQERHEVAMHGISENTTKISGNAEAISA
FT                 LSDRVDTNIHSLEERVELRLSPPLNERVDLVDGRAKTRTDELGARVEELAT
FT                 SVAQLLQTGETAAERAVPAVVNESEEVRDLLRFKEQQWEINRRRRDVAAEL
FT                 EERVARLEQVSVAPPPPPQVENACRSLCGGRPCRSDRGDDSAFEEEEVEPL
FT                 RARPPIRERPSRVPVREPVQAFDYNHFLTPLSDVKKYQVFRNSASGIHPRA
FT                 WLEQFDYSLPPNWPEGQKIEYVCGYLEGEPATRMRPLLRYCRYYEILGSIS
FT                 CLPTGRRGSRNE"
XX
SQ   Sequence 8748 BP; 2192 A; 1921 C; 2174 G; 2460 T; 1 other;
     tctggcttac cgctgccagg attcgctctt ctagcgggtc atctgtttaa tgaaatagtt        60
     ttttgcttta aatgcgtgcg ggaatattct taaaaaaaat tttttctttc ccctcccagt       120
     ggatgaatgt gtgagattag cagcgcgcat taatctattt cattttatgt tttcagcact       180
     tgtgtttgta ttttttgtgt gtttttgaag ggttatttta tttaattgtt tttgtaaaaa       240
     gagcacagcc acagtgcatt gcgtgtgaag gttttagttc gtgtttcgtt acgcggtttt       300
     tgttaggcta atcttgtgtt tgttactttt gttgttctaa actacttgtg atgatggaga       360
     atagttctgc cttgtccgtt tccactcgct ctaggcgatt aaaccaaagt gaggaccgtg       420
     aaaagtcgtc taggtcagat ctttcgaccg aaagggaaaa agtagcgaat acagacggcc       480
     gcgttcccgt tgaaaacgcg acttgtttaa acgtggacgc gaccggaagt gagggcaggg       540
     gcgaacaaag cgaaccgcat accaatatgc cggtttctgc tacttcgcaa actagttcaa       600
     ccagtgttac taggcccgtg tgcgtttctg atacgactct aagcgacatc atggctttca       660
     tgagagaaat aaaagcagga atgaaagcag aggtaggttc cataatggaa gcgcagaatg       720
     cttcagtcca ggccgaactt atcaaggttt ctgcgcagtg cagggaggcg caaagtaaca       780
     ccgttcaggt tattaacaat aatctggatg ggttgcgcac cgatatagtg cggctagttc       840
     aggaacggca tgaggtagca atgcatggta tctcagaaaa cacgaccaaa atttcaggga       900
     atgcagaagc tatatctgcc ctctccgacc gtgtagatac taatatccac tctcttgagg       960
     agagagtcga atagttaaga ctgagtccac ctcttaacga gagagtcgat ttggtagacg      1020
     gtcgggcgaa aacgcgcacc gatgaactag gcgcgcgcgt tgaagagctg gccacctcgg      1080
     tggcgcagct tctacagacc ggggagacgg cggcagaaag ggcagttccc gctgttgtaa      1140
     atgaatcgga ggaagttcgc gacttactcc ggttcaagga acaacagtgg gaaattaacc      1200
     gtaggcgtcg cgatgtagcg gccgagctag aagaacgcgt cgcgcgtctg gagcaagtct      1260
     ccgttgcacc cccgcctccc ccgcaagtag aaaacgcctg ccgcagtttg tgtggaggtc      1320
     ggccctgtcg ttccgaccgc ggagatgatt cggctttcga ggaggaggaa gtcgaacctc      1380
     tgcgtgcccg tcctcccata agagaaagac cgagtcgagt gcctgtgcga gagccagtgc      1440
     aggcatttga ttataaccac tttctgacgt aaaaaagtac caggtcttcc gaaactctgc      1500
     aagcgggata cacccccgtg cgtggctaga gcaattcgat tactctctgc ctccgaactg      1560
     gccagaaggg cagaaaatcg agtatgtgtg cggatatctc gagggagagc ccgccacgcg      1620
     gatgcgacct ctcttgagat attgccgcta ctatgagatt ttagggagca tttcctgtct      1680
     gcctactggt cggagaggca gcaggaacga gtaaaaagta gcattctagt gatgccccac      1740
     tttgcaacag caattgcagg agtctcggcg aattctttcg aggaatgatg ctgagaaatc      1800
     agttcctcga ctacccatac cctccacgcg aattaataga atttgcgctc gaagctccca      1860
     cggaatgtgc gcaatgccgt ccttgcggga agctgcaagg aggacattga gtccttccag      1920
     gcttacctgg aggacttgga gttgacgatg attacggacc tagaagagac ggcaacggct      1980
     cttctaggag aagtaatcgg agcgacaata gcgctaggac aaccgccagc ggaaagtata      2040
     gcagcgggag tccggtcctt ccaatgctga gaatcagcgc agcggaggaa cgagcaaggt      2100
     tattggcgtg ataagcgaga gacaagcggc gaaggttcgg gaacggaata agggctaccg      2160
     acccgataag gccgaaaacc acgcgacccg ccaacagaag acgtggaaat caggtcgctg      2220
     atccgcgcca taaccgaccg aaagaccccg gccctagcac gagccaatga caatccacgg      2280
     aagttgatcg acaccggtca acttgctagg aaaggagcac gtccgtccga aactagcagg      2340
     ggcagatgac attagggaca cacttctcga ggaagagcct actgcggtag cgccggcgat      2400
     gcaaccgctt attacaataa gcgttaagga cgtagttctg gaatgcgtac ttgacaccgg      2460
     cagcgtcgtt tcggtcatga gcgattccgc attcggccgt tgtcagacag tggggacatg      2520
     gcctgtactt cctttgcaga ggacaaaggt aaagggcgca ttagtcgggc gcagtgttga      2580
     tgtcaaaagg caagccgaag tagtatttga gtgtcagggt cacgaattct gcgtgaattt      2640
     tattatcgtg ccctcattga cggtagatgt cctcctaggc gtagaattcc tcctcgcaca      2700
     taacgccctg ttcgatttta gtgaaggggt ggtgcgatta tgcaagggga acgccatcat      2760
     cacattgaaa ttcgatgagt gtgctgctaa ggtggactct gccgaccgct actgccagtt      2820
     cttgtatgac ttctgcccgg caaatgctac cggttctttt agttcctgcg gagaggacac      2880
     ggtcgtactc tactgcggta ttgacgacga aaacgcgcta tcgaacgaga ttgctaagaa      2940
     agtcgagctt atagacgacg cgtcaggtac tgcgaaatcc gagctgtccc aaatcctccg      3000
     tgagcactcc tctgtgttct ctgagactcc cggcactata aaggggtttg tctaccgttt      3060
     caaggtccgg gaacatagga agttctttgt taggccatac ccgattccgt gggtgtataa      3120
     agagcaggtc gaggaggaaa ttaagcgcat gctggcggaa ggagttattg aacaagctgt      3180
     aagttcatac aacaacccgc tgctggtcgt tccgaaacga gataactcga ttcggcttgt      3240
     tctcgattcg agacaaatta acacggtgat agaaccggag acggaccgac cacagacgtt      3300
     ggatgaattg ctgcagcaat ttcacggcgt gcgcgtgctt tcctccatag acctgcgctc      3360
     cagttactgg caaattgaac ttgacccgag ctgccgacct tacactgcct tcctatgttt      3420
     cgggacctgc taccaattcc gtaagttgcc tttcggactc aacgtcagtt ctgctgcatt      3480
     tatccgcggg tttaacagta tcttgccaga tgacttacgg aaacgggtaa ccacgtacgt      3540
     ggacgacgta ctaatagcag agaactcgtg ggaagaccat aattatgttc ttaagcggtt      3600
     acttcaggtg ttcggacagt cgggagtgac tgtaaaccta atgaaatcag agttcggccg      3660
     ccgggaagtg aagtttcttg gccacattat atcgggggat ggtatcctac cagacccgac      3720
     caaactagat gcgattagag aatttccggt cccstcaacg aagaaacagg tcagggccta      3780
     cttagggctt ataaattttt ataaaagatt cctatcaata gaaagtattg ccacaccaac      3840
     tctttgcggg cttacgagca agaataaggc ttggaagtgg actgcgagcg cgcaaaagga      3900
     attcgaggac gtgaaacgcg ccttgttagc cgcgcccctg ttagcccacc ctgacctgtc      3960
     gaaggatttc tgtttaggaa cggacagctc taaggtcgga atagctgcag agctgtttca      4020
     agaaattgag gaaaatgggg tggtacagcg aaagacgatt gctttcgcga gtcgagtact      4080
     gaacaagtgt gagcgcaatt actccgtgac tgaacttgaa gctcttgccg tcgtcttcgg      4140
     tttccttaag ttcagagggt atttgtttgg gaggacgacc aaagtatata ccgatcaccg      4200
     cgcattagaa tttctaatgt cggctaagtt gacgcacggt aggttggcca ggtgggcgtt      4260
     gtttctccag gaatttcgtt ttaccgtggt tcacataccc ggaagcgaga atgtggtgtc      4320
     tgacgctctt tctcgctctc cggttggttt gacgcaaggg accaatgatg aactgaatga      4380
     aaataacttc agtgtcttat atctccgtgg cgttgctttc gagaacttta ttaccgcctc      4440
     ccttcaggac atagcgcggg aacaagataa ggatgagatt ttgagagatg tgaaggccaa      4500
     atggcgtgat cagactcatc cgtcgatccg acattactac ctaattaggc gaaatatctt      4560
     gttccgacgt agcgaccccg ggcaatcgaa ctgggttgtg tgcattccag atgagtgggt      4620
     caacaaactc atctggttta ctcacctaag ctacgcgcac tatggacccc gcaagtgcta      4680
     ccagaaactc cgtgatacct gttacttcct aaatatggaa aaaaggatcc ggaaagtgct      4740
     ggccacttgt aagctttgtc aaaaatctaa acctcccacg gttacacacc aagctcccct      4800
     ctttcctata atcccttctc ggcttcgtga gttagctgcg gtcgatctct tcggaccgct      4860
     accacgcaca atgaatggct attcttacat ctttgtggca gtggagctaa cgtcaaaatt      4920
     tgttaccttg actcctttaa ggagagcgac cggacggtcc gttgctcagg cctttatcaa      4980
     agacttctta cgacaagtcg ggcctgtaga gaaagtcatt gcggacaacg gttctcagtt      5040
     ccgttccccc gtctggaaag aaatgctgcg gaggagacgc atgaggccgg ttttcatatc      5100
     tgtttatcac cctgcgtcaa atccttgtga gcgggtgatg aaggaactgg ggaagctgtg      5160
     ccgcctgtac tgctaccgtc gtcatagggc ttgggatcgg tatatacaag ggtttcagca      5220
     cgtcctgaac gacctcccaa acagctccac ctctatgccc ccggtgctgg tacttaaaaa      5280
     ccagcacccg gaggacaagg tgcgtgaaac tgtgcctctc gatccgccgg ttcgtctgag      5340
     acaccgtgac gttatcgaac gcgccctggc gaatattaga gatgccgcag agaggagacg      5400
     acggcaagac aaagtcagtc gcgtggtaag agtgttcgaa gtgggccaga aggtcctagt      5460
     acgctcgcga cgactctcga gcaagcgtca ttcgcttacc aagaagtttt tccccctttt      5520
     tgtcggaccc taccgtgtca gacgtatagc ccacgagaac gccgtggagc tagaaactct      5580
     tcgcactagg aaatccagag gactccacca tgtctcgagc ctgaggttct accgcgagta      5640
     gccaggcgcc taattgtgtc atacgttttg tgtaattttc tgtttgctaa ggtaaattta      5700
     agtgatattc ttaccaccca tgtcatttgt gtttgtagat ttatgctgta ttttgtatgt      5760
     cttttgtagt gttttcttta aatggtttgt tttaatagtg tattttgtta tatgtgtcct      5820
     ttgtatatgt atgtgtttgt tgtgcgattt catttcgcca taacgcatct tcatgttgta      5880
     tgcgtgtttt gtgtactata aggtacacgc cgctattggg gtggataaca gcaacttgcc      5940
     agttccatct ggtcggctgt tcgacgtacg ttaccttgac gctccgtttt gtacataaaa      6000
     aattattagt gtgacatgtt caagtgtctc tgttagctat aaggctgcct gcctcacata      6060
     gtcccttttt ttttttcccc atgcttttat ctttttgttt ccatcgtgag gattgatggt      6120
     gcataatcta agttctttag gccatgttaa gtattttatt gtgtatattt tgtgtatgtc      6180
     ttgtttatgg taatttgtgt ccctgtatat cgttttaagt gtgtgtgctc ttcttcactg      6240
     tgcgtgaaac tagccttgtt tagcaagtgc tttagttgcc acctttactg taaattttat      6300
     atcggcaatc tccccgttag gtagcatgtt tataagacgc cgtggtaggc gccaacgccg      6360
     taattcatag gatttttagt tgcacgtaga tgcactgtgg tgttgatgct caggggtcta      6420
     gataattttg tctagggatt gtccgtttga ataacaggag gtgtgcgatt cgaccggaag      6480
     acggtcgcgg cagagcacta acgaaggggt tcatcaaaat ttcattgaca atatacaccc      6540
     tggcttatta atagaaccaa cttatatttt tcagataagt tttgcagggc aattttgtaa      6600
     attaaaggac ggagcgtgat ctgtagaaga ggccagactc acattcagaa gagggcagaa      6660
     tcacagatgt gaggaaatac aaacaaaaat aaaggagctg aacaaaggca agctccacgt      6720
     caaggaactg tccgccctac atgtaccatg aggacacctg aatttctaac atcgatagga      6780
     cggtaaacca ctaatctcca ttcttagttt tgcagcatgg ttgtggaaga ataggttaca      6840
     ttgtaagtca attttacctt agattatttt attaacttag gattgtttaa cttgtgtgga      6900
     tttctagtgt ttattttatg tgtttgtaca tttgatcatg ttttgtcttt ttttatttcc      6960
     aagatgtttt ttgttttttg ttaatatgtg tcatggtttt atctcgcctc tgcgtgagcg      7020
     atttgcgtaa gactgtttcc aggcctaacc acgaatttgc ggcgttggaa ccagaccgac      7080
     gggctcaaga aaactccctc ccccttcgcg ctgtagttag ttagttgggc agtaggtagt      7140
     tatgcagtag ttagtttgcg tagcgttgca tagagcttgg tagttcgttt ttttttgcat      7200
     aggctgcatg ctgcatgagt aaaagtagct ttgcttcact aacactaacc ctgagagtct      7260
     gacttaaagt ttaagttatt tattataaat atattatgct caatgtgata ttaagttaga      7320
     ggataaacta ttattcttct attattatgt gttatttcaa tgtaatatgt caatttttgt      7380
     gttttgccta tatatatcta tgacattgta tccttaatgt taaaatattt attaaggact      7440
     aaaggcctag gcgttctgtt cgccatatgg ctaatttaat gtatgagtgt tttaatttta      7500
     aaatgttttt gtatgaacct ctatcgaggt tatttgtatt tttgttaaat gttttgttta      7560
     aataagaagg cactccacgt ttgtgacacg atggagttcc tcataagttt aatatgtcct      7620
     gtggtaacat ggtgcaccaa agtgttggca gatatctgag ggtgtctgag gccaagacgg      7680
     aagacgagcg gccgccctgc caaaactgct aactggtccg gtcgagcggt tccagccggg      7740
     tacacaatgc taccgaccct cggcgcgcac aaaagagttg ggtgattagc agcaacacac      7800
     aagctgcgcg gccgccgctg gtgcgcagcc gtcctgatcc cggtcgctgg tccgctaatc      7860
     tcttccggtg gcgagcctct cgccgacgcc ccacacttgt caggccgcct gtcacgggta      7920
     caagggacac caggccttgc agacaggtgc actaaccaca ccctcctact cacgtcggat      7980
     gcagttgaat agctgaggaa gagacacaaa agtaaaagta tcttcttatg tgtgcgggtt      8040
     ttagcttcct cccagtacct tctagaagat tgtctccctc cctcttcaaa gaccctagtc      8100
     gacggttcga actaatgaga acagtgttta ttgacttaaa aaccagtgtt gagtggacga      8160
     caatgtgaag gacagcatca ggttgaaaag tggtgtgagt agtagaaaca gtgaacgctc      8220
     tgagagtgca aaatacgatt cacctgctaa gaggcccttt ccctgtagcg accctggtcg      8280
     ccctcagcaa ctttaaaaat ctgtcatgaa catactgttt tttcctaatt tggagtgatt      8340
     ttaaaaacat tttatccatt tttttttatt gaggaactgt tttagcataa caggacacat      8400
     tcaaaattgt gatcttattt ttttttttgt gtttcaacct catgtatatt ttatatttat      8460
     gatttatcta tctatgtttc cttgtaaatt ttgcattgtt atacatgttg tcccaatccc      8520
     gtggtctcac cagccacatc tgcatctcca ttgttttagt ttttatggca attattattt      8580
     ttcaatgtgt tttgttgttg ttgttgtatt tgctgttttt gtgtgacgtg ccccagctgt      8640
     ctatgtcgcc cataaggcaa ccacatgtta gttttgaaaa gtttgctgta tatgatgtaa      8700
     tataattacc tcagcctaca tcaaaatttt caattaacga aggggtga                   8748
//
ID   Gypsy-31_LMi-LTR repbase;    DNA;    INV; 2538 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2538
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 2538 BP; 548 A; 524 C; 511 G; 955 T; 0 other;
     tgaaagacga ccgtctgtcg tcttccatat attttttgta tatttctgta aagttataat        60
     ttatttaatg tcgctagatt atcattttgt taaaacttga accccactct tttcaaggct       120
     tgaggaatag catttttatt tcatgtgtta aaatattagt taatattgct aggtttttct       180
     tattttgtta tgttaataat ttattattat attaattaat gtggcataag tacggcttct       240
     ccgctacgcc actgtccctg tgagaatgtg cagttgtttt acttttaagt gggtgcgaga       300
     atctatggct gtctgaatgt ggggagtgat agctcgcttt gcatcgttct ctctggctca       360
     ggtcgatagc tgctgatgct accaaagagg tttccacacc ctttggttgc agtctagtcg       420
     gcgagccttc ttcagcgcga gtctcgctct ccgtccccac caccgctgtt tcttggattt       480
     tccggcttcc ggtggcttcc cgcgtccgtg gccgctcggt ctgtcattct gtgctggtct       540
     tctggtgagg taaggttggt tctgctcttg ttttggagat ggtagcgttt cattgactag       600
     cacgtttaac ttagattcgt gaacttagaa tcattttttt gaatattttc tccgatcgtg       660
     tgcggaaatg tgttctcgtt tttcaattca gtgatttcca atagataaac gcggtgtgtg       720
     tgattctagt tgcagtttga taacggcctg gtatgttaaa accttttgtg atcatgtggc       780
     ggtgtatgaa ctctgtgtaa atactttcta gctttgtggg gcccgatttc taataggtga       840
     tatgttcatt tttgtacagt gcatgtaaaa atcttctcat cgtttccttc cgtgagtgat       900
     atgtgttcca cgtggttggt tcatagaaca aagccttcag cttccactct tgtttgttcc       960
     atgcccatca ggcaagtaac tatgcgggta tccttctgat ttccactaat atttcgcgat      1020
     cttctctccc cgcctatttt aattttgctg tttcttctcc gacttgtagt acgcactctg      1080
     tctttgtcag taattctctc tgagccttgt acaacctcct tcaatagctt ccttatgtaa      1140
     ttctaaacat ttctatgggt tgcatgctgt aattcttaat tttatttttc cgactttgta      1200
     attatttcac ttttacgagt tttttgagac tggacttcat ccgtctctgt aacgctccct      1260
     atcgcgtgta gctgcattct ttcgcttctt catgtaattc taacatttta gggttgcatg      1320
     ccgtaattct attttatttt tccgactttg taattatttc atttttgtgg tttttctgag      1380
     acaggacctc atccgtctct gtaatcgccc cctatcgcgt gtagctgtat ttcattcgct      1440
     tccttatata attctaagca tttctatggg ttgcatgctg tagttaattt tctttatttt      1500
     tcggaaactg aatttattca attttatcgg ttttcggaac cacgtgggtc cgagttccga      1560
     cttccggggt ttgcagctag tcgcctgagt tcacgccact tctcatataa aaccagtacc      1620
     tagatcgatt tctaacagac tgcaacttaa gaatccaccg tgattttgta taatgaatcc      1680
     gattttcaac cacttcacct tcagtggagt gcgttcatgt aacgtagccg tgtgtcgccg      1740
     ttagcgtgtt tgctcgcggt ccaattcaga tgtaatttaa cttggctata cacacgcacc      1800
     atctcaaaac aggcacgaca gaccagagcc agcttcaaag tgtttttgta tattgtgttt      1860
     tgtgctacct ccgacttgct gaatttcgcc tacgatagcg gcgcctgctt ccgcctcgtc      1920
     tcagcacgct gattttggtg agtttcgctg tggcattgcg tgtgtgtgag cgaatgagtg      1980
     ttgtttgtga atccttcccc ccagtagcgt taaatcatgt ataatttagg ctgggcaccg      2040
     tccgcattaa tccatgtaag agatgcattt ttattgtatt aacaaaattg gttccccatt      2100
     ttgcttgttt tctatctgaa taaacaagtt taagttcagc ataatccgta agttgcctat      2160
     aaattgtagt tttagagcac cttccctctt ttatttaata ttgttcttca caagtgctga      2220
     gaacaagctc agatgcaatt tttcttatgt ctaaattccg ttgcgccata aatgttttct      2280
     tagccacctt tctaagataa ctttaattgt ggtggcttgc ttattaatgt ctgtgtgtaa      2340
     taacgtgtga gctgctatgt atattgacca ctgtagtatt aacttcctgt tattgaagta      2400
     atttgaaacg agtcagttct cagtttgggc cagggaacaa ggctttgtag cagggagtaa      2460
     ccggtagttc acacggacct catttgctaa ttttagtgat aaaacaaggc tcttgtttcg      2520
     tacagtggtc gactttta                                                    2538
//
ID   Gypsy-31_MoPha-I repbase;    DNA;    INV; 5051 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5051
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1109-1109 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           686..4858
FT                 /product="Gypsy-31_MoPha-I_1p"
FT                 /note="SAP domain, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MEKNLAQLKVAELKERLVALGLSTTGTKTELVSRLCA
FT                 ADPSGEYIGNFQMEEESPEAASGAAEPMRSAWGMEELVREVALLKREREVM
FT                 ERERRLLERENELLRGSPSSTASLQQAPHKIGVKSVIELLCDFDGVKPLFC
FT                 NWERQVKLLCTTYQLDDNAAKILIGARVKGKALQWLHSSPEHIEMSVEELL
FT                 KKMTDMFDLRPSKMVLRKEFESRKWKPGETFSDYYHAKIVLANNVPVEETE
FT                 LVDYIIDGIADTQLQNQARIQRFKSKAELLAAFEKITISDWKNRSGRNVQN
FT                 QKTGSRTTTPSSSEKTDKDISKGPPKIVRCYNCDKTGHWAKECQLPAREKG
FT                 ACFSCGEXGHVVKDCTKGQVNYVHEMSSQEEEFKQLVTYKLSNSXVSYTFQ
FT                 LETLIDTGSPVTFVKAKHLPSHCINKLNIASELCGINNSKLNIQGSVNVHI
FT                 CFDGVEKKDLTVYVVPNDTMRVSAVLGRDVLKIFGLSLTKPSRVNYNTAVA
FT                 EILNIEVSNDTDIVNKMNISSEIPVEYQEKLKEEFRHKYVEAESPVEPKIK
FT                 TELKLVLTDTKPFHYNPRRLSQYEKTELKKILDNLLQKGIIRESESEYASP
FT                 IVLVKKKSGDLRMCVDYRHLNKIILRENHPIPVIEEQIEIVGNKCYFSILD
FT                 LKDGFYHINIVEESRKFTAFVTPFGVFEFTKMPFGLKPAPQIFQKHIYKSF
FT                 KKLIESGDVGVYMDDVIVATVTIEDHIKVLSQVFEILNENNLVLRLDKCKF
FT                 LYTNVDYLGYSVSSEGVGPTKAGVQGVIDFPIPRDIHRVHSFVGLCSYFRK
FT                 FIKDFSVRAKPLYDLLKKDTSFQMGERESKSFEDLKDALVKAPVLAVFNAK
FT                 DSTELHCDASSIGFGAVLLQKKADRKLHPIFYFSKRTTNTESKYHSFELET
FT                 LAIIYALRRFRNYLIGVKFKIVSDCNALKLTLDKKDLNPRIARWALELQDY
FT                 DYTIEHRSGNKMKHVDALSRITDVLVVEDNPFEFNLSVCQSQDATIKELRE
FT                 RLEKKEDRDFELRNGIVYRKMGDSLLFYVPENMESNVIYRYHDSMGHLGLD
FT                 KVRSIIKSSYWFPNMKRKIENHVQNCLKCIAFSPSSGRVEGFLHCIPKGNV
FT                 PFATIHIDHYGPVDKQRLCKQYIFLVIDAFTKFVKLYATKSTTSKEVIVCL
FT                 SQYFAYYSKPNVIVSDRGTAFTSAEFTEFIEKQEIKHVKIATGSPRANGQI
FT                 ERVNRVVTPMLAKITDSSVGDHWYKMLEEVEYALNNTVHKSTKEIPSKLLF
FT                 GVTQRGKVTDYIKEYVENDVNDKDLDLGKVRDTAAKEIETSQKYAKDHFDR
FT                 KRKKPHQYEVGDRVMVRNFDSKVGVSRKLIPNFKGPYEISKKLRNDRYVVK
FT                 DIEGHQITQKPYMGTWEAANLRPYVVSA"
XX
SQ   Sequence 5051 BP; 1647 A; 827 C; 1255 G; 1320 T; 2 other;
     aaatcagaag tgggattcga gatccgggat ttggaattcg attctctcgg gcatctcgag        60
     tggcaaggca cgacaagaac ggacatcgtt tggtggcgat tgtcgcggat gttgtgcgct       120
     gacgagtggc cggcgtagtt tggtgacgag cggcggcata tcgttcggtg acgattacca       180
     gtgatatcgt tcggtgacga ttcactggca tagtgtgatt gcgagcagcg gcatatcgtt       240
     cggtgacgat tgctacagat tcgctcttcg ccattgattg aagtggcgat tgcgcgtaag       300
     attgcgcaga tctcgttcgg tggcgagtgt gcaacagata tcgttcggtg acgattacga       360
     gagacattat agagagtgtc aagagtggtg cattgctcgg tggcattgct aaaagacagt       420
     tacgacacga gaagagcgca agaaaggacg acgtagtgga aacgcggtcg gccatattgg       480
     aagattttgg cgcgaaaagt ggtagtgtgg ccattgtgca tgccggaaga cggaacggcg       540
     gccatattgc catcgaggtc gtgaggatac acccgccata agaggacgct ggctggcggt       600
     atcgatacgc aggtggcgtc agagtgtcga tcgatatatc gataaagcgc agtgcagaga       660
     cattaaccta aacctaagca gaggaatgga gaagaatcta gcgcagttaa aagtggccga       720
     actgaaggaa cggttagtag cgctaggatt gtcgaccaca ggtacgaaaa cggaactagt       780
     gagcagattg tgcgccgcgg atccgtcagg agagtatatc gggaatttcc agatggaaga       840
     agaatcgccg gaagcggcat caggagctgc ggagcccatg agaagtgcat gggggatgga       900
     ggaattggta cgagaggttg ccttgttaaa aagagagaga gaagtaatgg agcgagagcg       960
     gagattactg gagagagaaa atgagctgct gagaggctcg ccaagttcaa cggcaagttt      1020
     acagcaagca cctcacaaaa ttggtgtaaa atctgtaatc gaattgttgt gcgatttcga      1080
     tggagtcaag ccattgttct gcaactggga acgtcaagta aagttgttat gtacgaccta      1140
     tcaactagat gacaacgcgg ccaaaattct catcggtgcg agagtgaaag ggaaagcctt      1200
     gcagtggtta cactcttcac cggagcatat tgagatgagt gtggaagagc tattgaagaa      1260
     gatgacggat atgtttgact tgcggccaag taagatggtg ctgcgtaagg agtttgagag      1320
     cagaaagtgg aaaccaggtg aaacttttag cgattattat catgctaaaa tcgtgctcgc      1380
     aaataatgtg cctgtagaag aaacggaact cgtggactat attattgacg gcattgcgga      1440
     cacacaacta cagaatcaag caagaataca gcgtttcaaa tccaaagcgg agctgctagc      1500
     ggcatttgaa aaaattacta tttcggattg gaaaaatcgg agcggacgga acgtgcagaa      1560
     ccagaagaca ggcagtcgaa caaccactcc aagttcatct gagaaaactg acaaagacat      1620
     cagcaagggt ccaccaaaga tagtcaggtg ttacaactgt gacaagacag gacactgggc      1680
     caaggaatgt caacttccag ccagagagaa aggagcgtgc ttcagctgtg gagaaamagg      1740
     acatgtagta aaagactgta ctaaaggtca ggtgaactat gtacatgaaa tgtcgtctca      1800
     ggaggaagag tttaaacagc tggtaactta taagctaagt aactcgaamg taagttacac      1860
     atttcaatta gaaacgttga tagataccgg gagtccagtt acgtttgtaa aagcaaaaca      1920
     tttacctagt cattgcatta ataaattgaa tattgccagt gagctttgcg gtattaacaa      1980
     tagtaagtta aatatacaag gaagtgttaa cgtgcacatt tgctttgatg gagtagaaaa      2040
     gaaagattta actgtatatg tggttcctaa cgataccatg agagtatcag ctgtgctagg      2100
     tagagatgtt ttaaaaatat ttgggttaag tttgaccaaa ccgtcccgtg taaattataa      2160
     tacggctgta gctgaaattt taaatattga agttagcaat gatacggaca ttgtgaataa      2220
     gatgaatata agttcggaaa ttccggttga atatcaggag aaattaaagg aagagtttag      2280
     gcataagtat gttgaagcag agagtccggt agagccaaaa attaaaacgg agttaaaact      2340
     tgttcttacc gatactaaac ctttccatta caatccgcgt agattgtcac aatatgaaaa      2400
     gacagaatta aagaaaattt tggataattt gttgcagaaa ggtataatta gagaaagtga      2460
     gtccgaatat gcctctccca tagttttggt taagaaaaag agcggtgatc ttcgtatgtg      2520
     cgtagattac aggcatttaa ataaaatcat tttgcgggaa aatcatccaa taccagtaat      2580
     cgaagagcaa atagagatag ttggtaataa atgctatttt agtatcttag atctgaaaga      2640
     cggtttctac cacataaata ttgtagaaga atcgcggaag ttcacagcat ttgttactcc      2700
     gtttggagta ttcgagttca cgaaaatgcc tttcgggttg aaaccagctc cccaaatatt      2760
     tcaaaagcat atatataagt catttaagaa gctaatagag agtggtgatg taggcgtgta      2820
     tatggatgat gtgattgtag ctacggtaac aatagaggac cacataaagg tgttgagtca      2880
     agtttttgaa atattaaacg aaaataacct tgtactcaga ttagataagt gtaagttctt      2940
     atatactaat gtagattatt taggttattc ggtatctagc gaaggcgtag gaccaactaa      3000
     agcgggcgtg caaggggtaa tagatttccc cataccgcgg gatattcata gagttcattc      3060
     ctttgtcgga ctttgttctt atttccgcaa atttataaaa gacttttcgg ttcgagcgaa      3120
     accattgtat gacctattaa aaaaggatac tagttttcag atgggagagc gagagtcgaa      3180
     atccttcgag gatttaaaag atgcgctagt caaagctcct gtattggctg tgtttaatgc      3240
     aaaagatagt acggagttgc attgcgacgc cagctctata gggtttggag cggtgttatt      3300
     acaaaagaaa gcggaccgta agttgcatcc cattttctat ttttcaaaac gtacgactaa      3360
     tactgagagt aagtatcaca gtttcgaatt ggaaactctg gctatcattt atgcgctgag      3420
     acgttttcgc aattatttga ttggcgtaaa attcaagata gtttcagatt gtaacgcgtt      3480
     gaagcttacc ctagataaaa aagatttgaa tcctcgaatt gccagatggg cattggagtt      3540
     gcaagattat gactacacta tcgaacatcg cagtggaaat aagatgaagc acgtcgatgc      3600
     tttaagtaga ataaccgatg ttctagtagt agaagacaat cctttcgagt ttaacttatc      3660
     agtttgtcaa agtcaagatg ccacaatcaa ggagttgcgt gaacgtctag agaaaaagga      3720
     ggatcgcgac tttgaattaa gaaacggtat tgtatatcgg aagatgggag acagcttatt      3780
     attctatgtt cctgaaaata tggaatctaa tgtaatatac agatatcacg atagcatggg      3840
     tcacttagga ttagataaag taagaagcat tattaagagt agctattggt ttccgaacat      3900
     gaagagaaag atagagaatc acgtccaaaa ctgtcttaaa tgcatagcgt tttcgccgag      3960
     tagcggtaga gtagaggggt tcttgcattg catcccaaag ggaaatgttc cttttgcaac      4020
     aatacatatc gaccattacg gtccagtgga taagcaacgt ttgtgtaaac aatacatatt      4080
     tttagtaatt gatgcattta ctaaatttgt aaagctatat gctactaagt ctactactag      4140
     taaagaagtt attgtctgtc tttctcaata ctttgcgtat tacagcaaac caaacgttat      4200
     cgtctcggac agaggaacag cgttcacctc tgctgaattt actgaattta ttgaaaaaca      4260
     agagataaag catgtcaaaa tagcgactgg ctctcctcga gctaatggac aaattgaacg      4320
     cgtaaatcgc gttgtgactc cgatgttggc gaagatcact gatagttccg tgggtgacca      4380
     ctggtataaa atgttagaag aagttgaata cgcgctaaat aacacagtac ataaatcgac      4440
     caaagaaatt cctagtaaat tgctgtttgg agttacgcag cgtggtaaag tcactgacta      4500
     tataaaagaa tatgtcgaaa acgatgtaaa cgataaagat ctagatttag gcaaagttcg      4560
     ggatactgct gcaaaagaga ttgagactag tcaaaaatat gcaaaagatc actttgatcg      4620
     caaaagaaaa aagccacatc agtacgaagt aggagatcgc gtaatggtgc gaaatttcga      4680
     tagtaaggta ggcgtgtcaa gaaagctgat tccgaatttt aagggtccgt acgagatatc      4740
     aaaaaaattg cgaaacgacc gatacgtggt taaagatata gaaggacatc agataactca      4800
     gaaaccgtac atgggtacgt gggaagcggc gaatctgaga ccgtatgtgg tttctgccta      4860
     aacaaagtcc atttgaagaa tagtcataaa acacgatcga accaaagata ctcgtttgtt      4920
     tttgtattat ttagtgttaa gtatattata ccactgacat gtattttgag ttatggttat      4980
     gtatttcaaa ttgaattatt atatatgtat tcgggaaagc ccgagacggg ctagtgtcag      5040
     aatggccgaa t                                                           5051
//
ID   Gypsy-31_MoPha-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-167
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1195-1195 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 167 BP; 54 A; 20 C; 54 G; 39 T; 0 other;
     tgtgagcgtt aggttggtag tccgggagtg agctaggttg gtaatgcgag agttaggttg        60
     gtggaagaac ggcagtagga aaagaatagg cggcgagaca agaagtaaat aaagcatgtg       120
     cgagtaaatg tattacgaga aatttaattg tccagtaatc cctcaca                     167
//
ID   Gypsy-31_MSe-I repbase;    DNA;    INV; 5141 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5141
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 908-908 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5141 BP; 1628 A; 904 C; 921 G; 1686 T; 2 other;
     aatggcgccm aacgtggtta taagttaaaa ttcacgattc gaacgtaaac aattagtgtt        60
     aagtactatg ttaagtggtt gtaaactgtg tcaaatttag taaataagag tgtacgtagt       120
     tttatttaat aaaaaaaaac gacgtataca attacctata tatktaataa gtttagtgta       180
     gtgcacatat ctggtaagta caatttgatt gtaatattgg ggacgccatt gctacaactt       240
     gcaagtctat gcttagctcc gtgtacatta catttctttt tattaattat tattgactgt       300
     ttatcggtta tggtcgaatg cgcgttgctc taacaaaaat aaaaactgtt tttgctcttt       360
     tctcaatgag tactaacttg aaaagtaacc actgcttgat ttgattttgt tttacagttg       420
     acacttcgtt gcgtgtttat cgtcactatt attgtattta aaatggccta cccaataaaa       480
     tttttattac tccagaaagc tgaattattg tatgaagtgg caattcgagg ggagtctccg       540
     tcggacaacg taataggttt acgacgtcaa gtcaataaat tgacacaact ttatgcgtct       600
     gatgatatat tggacacagt gtacagtttt gcagaggata tagccggttg tgaagagacg       660
     ttaggtaaag tgagcattaa cattgaaaat ctgaaaacta attacaatga tgcactacta       720
     gctagaacca cttcattgtt aaatcactta cactacagat tacaaagaat acaacaaccc       780
     gaagagccta atgattttat tactttaaac aaattaagga atacatttga cagccactac       840
     tcaaatcttt tgactttaac taatcctagt caggaatcta aagtagcttc tatagagcca       900
     cataaagaac atttagacaa atctgaattg tccaatttaa atatttcagt aaaatgtgat       960
     cgtggactgg ctggagaatt agcaaaactg aaatatgacg gtaaaacttg tgtacgctcc      1020
     tttattcaaa accttgagga attccgggta tctaagggtg ttacagagga aaaaatgctt      1080
     tcctctgcca ttgatatttt tattggtgat gctcttcatt ggtatcgtag tactaaggca      1140
     aaagttaatg attggaaaac tttaattcat ttacttaggg aggattttga cattcctgac      1200
     tatgactata ggatgtcctt ggagatacga cagcgtaccc aaggcagtaa tgagaatatt      1260
     gtcatttatt tagctataat ggaaggtatg ttttcccgtc taagtaagcc tatgagtgag      1320
     gagcataaac tagaaattat tttacacaac atacgccctt gttactctct gttcattgca      1380
     tctagaccta atgttaattc tatagaggag ctccgaaata tttgtaaaaa ttatgagcaa      1440
     ataaaagtgc attctgacca atttaaagaa ccacctgttg caagttccag taccatagct      1500
     cctgaattca gttaccgccc ctataagcca aaagaaaacc gtagacaatt ttataatagt      1560
     agctggagta acacaaaaaa ttctaacccc gctgtgtctg aggtttccaa acccaaaact      1620
     ttctgtcttc gctgcaaggt tgatagtcat tctatgaaag attgtccagc tgagagaatt      1680
     attttctgtt ttaagtgtgg aaaaaaagat gttagaaccc caaactgtcc aaattgtgct      1740
     ccaaaatccc agacaaaaaa ctaagatctg aaaattgcaa gagagtaaca actaatcatt      1800
     ttgacatctc ggattggaat gattggttgt taaagataag aagttttttt acaaaaaaga      1860
     accagatttc tgcaattttc acatctgttc cgagccaaga ctctcgtcct tatattaagg      1920
     taaaaataaa taatacaaat gatttggaat tctatggact tttagacact ggttctgcgg      1980
     ttactatttt gggtaacaat tctcacaagt atctttttca atttgactta gccttgtgta      2040
     ctgatcaaag gattacagtt actgctgccg gaggtcaaaa gataaattcc ctaggttaca      2100
     ttctgcttcc aataactttt gagaataagt tctctattat taaggctcat tgtatcccag      2160
     atattaaaac aacattggta ttgggaattg atttttggaa tatgtttgat ttatgcccta      2220
     aatatttgac taatacaaaa aatttatttt ttgatgaccc tggactttca gaaatttcga      2280
     aatcttcctc aagctactta caagcttatg atactctaag tgatgctgag aaacccattg      2340
     ctgatactat aattgaaaaa tttaaagata tttccttctc cgaaaaaggt ttaggcagaa      2400
     caaatcttat taaacacaat attaacacag gtgattctga acccatacac caacgttatt      2460
     atcgtatgtc accggaaaaa caaagagtta tcactcaaca ggtggatgaa atgttggcac      2520
     ttgatgttat tgaaccatgt gaaagtccct ggtcttcccc tgtattagta gttggcaaaa      2580
     aagatggtaa tcctcgtttt tgtttagata gccggaagtt aaattcaatt acaaagaaag      2640
     atgcatatag tctaccatat atttctgaaa tattggataa tttaaaagat gctagatatt      2700
     tgtccagtat tgatttgtct aaagcttatt ggcaaattct aataaatgaa cctgaccggg      2760
     aaaagactgc cttttatgtt cctggccggg gcacttttat gtttaaggtt actgcatttg      2820
     gtcttactaa cgctcccgct actcagcagc gtcttgtaga ttctttgttt ggaccagaat      2880
     ttgaattgaa agtatttgcc tatcttgatg atattattat tgtttctaat acttttgaag      2940
     agcatgtttt attgttgaat aaagtgcatg aaaagttact ttcagctaat cttacagtta      3000
     gccttgaaaa atgtaagttt ttagaagtag gttatgttac cttggttata ttatagattc      3060
     acaaggttta cgcacagacc ccgaaaaaat tgaggctata ctgaattacc ctacccccac      3120
     taacaaaaaa gaaataaaac gttttctggg gactgcctca tggtacaggc gttttattcc      3180
     gcaatttagt acaattgcag gcccccttaa taaactgaca tcaactagaa aggactctcc      3240
     tccgtttcat tggacgccac aattagaagc tgcttttctt aagttgaaat ccaaattagt      3300
     tgaggcacca gtccttgcgt gtcctaattt tgaacaccca ttcgaagtgc ataccgacgc      3360
     tagtaatttt ggcataggcg ctatgttagc tcagaccatt aacggggtgg agcacccaat      3420
     agcatacatg agccgttcct taactccacc agaacgtaat tacagcacta cggagagaga      3480
     agctcttgca gtcttagtcg cacttgaaca ttggcgttgc tatttagaaa ccgacaaaaa      3540
     atttattgtt ttcactgatc atgcggcatt gaagtggttt atgtcccttt caaatcctac      3600
     gggtcgtcta gctagatggg gtgttcgtct ctcttccttt aattttgaga ttaaacatcg      3660
     gcgcggtaaa gacaatatcg ttcctgatgc tctttctaga agtgtggcag ttaacattat      3720
     cactgaagat gaatctattg tttctactcc taccatgact acagatagct ggtatcttag      3780
     tatttttaac ggctgcaaag attccccaat tagttttcca aattatagag tagaaaacag      3840
     tatcttgttt agatacatga aaaataaaaa cattctcact tctgaatttg cgtggaaaga      3900
     agttattcct gaagaacggc gtgaacagat ccttaaggaa tgccattcag tgcccacatc      3960
     cggtcatttc ggcgtgttca agacatacaa acgcttggca cttcgttttt attggcctgg      4020
     tatgtactct gatgtcgtaa agttcgtttc tcattgtgat atttgtcttg catacaagtc      4080
     acctaaccat agtacccttg gtatgatggg tagaccaaag aatgtctcgc gaccctttca      4140
     gactctttca attgacttgg tcggcccgtt acctaaatcc agaaaacaaa atcagtacat      4200
     ctttgttgta acatgttgtt tttcaaagta ttgtcttctt ttcccactca gacgggctac      4260
     tgcagacttg gtgtgcaaac atttggaaaa tgatgtattt cttgttcatg gcattcccca      4320
     aactatcatc ttggataatg gaagtcaatt tattagtaga gaacttaata aaatatttaa      4380
     aaggtataaa attcccaata taaatttcat tcctaaatat actcctcaga taaataccgt      4440
     tgaaagatat aataaaacaa taattactgc tgtttctacc tttgtaaatg atgatcatag      4500
     aacttgggac ttaaatttgc ctaaaattca gtttgctata aacagttcag taaatgaaag      4560
     caccggatat tctgccacat ttttagttta tggccgggaa cttgtgactt gtgggacaca      4620
     ctatatagaa aattccgatc ctaatgatct cgtgctttta ccacatgatg cttatgctga      4680
     aaatttaggg tacctagctg aaatttttga caaagtgcaa gcatcacttt ggcaggcaca      4740
     tacaaaaaac actcaacaat ataatttgcg tcgtagaaag gcagagttta atgtgggaga      4800
     tattgtctgg aaaagatgtt attttcaaag tgacaaagaa aattacttta gcaagaagtt      4860
     ggctcctaaa tttaaaaaat gtcgcattaa agaaaaacgt tcagcacttg tctatgtgtt      4920
     ggaagattta gtaggaaatg acctaggtgt ctggcatatt aaggatttga agatttccgg      4980
     tagttcttaa catttattaa tgttatgttc taagtattcc ctttattctt ccctctttcc      5040
     cttttctcat tgtgtactta tacacacact gagtttattt tttatttttt tttttttgaa      5100
     tttctcccct aggaaaaatt ctttcctaag ggagggggta a                          5141
//
ID   Gypsy-31_MSe-LTR repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-357
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 957-957 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 357 BP; 96 A; 74 C; 70 G; 116 T; 1 other;
     tgtaacgtag cgttataaat attgtttaaa ctttttattt agtcgataac ttatcgatta        60
     ttttggacag cgcgtcgacg ctgacgccga cttccctcgc ckccgcgcca gtcgtgctcc       120
     gccaccgtag cggacggtcg tcaaagatta tatgtaaacg atacgcatgg tgaagcacgg       180
     cgcccggctt acggacgaat gtgaatttat aatttgtgcc cgaacctgta ttacctttat       240
     ataataacta taatctagcc taagtgtgtt tagtgttagt atgtactaat cactcaatat       300
     atgttaaact aattcaatag tttcatttaa gtacttgtgt tgcatcttaa cgtgaca          357
//
ID   Gypsy-31_OrIn-I repbase;    DNA;    INV; 5770 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5770
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1572-1572 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           310..1830
FT                 /product="Gypsy-31_OrIn-I_1p"
FT                 /note="PHD zinc finger at the N-terminus."
FT                 /translation="MSVPCGYCEQEVPEAECVTCTGCKGWVHLPCSHITIA
FT                 NYNKLATALKKTFQGPCCNSSARDKISRNSMDKLLDSRFKDFTSGIDASLK
FT                 KMSDNLQDQIRNLSKDCSKLNSMHTSLQSAFSDFENKFRALSKDVSNLSSS
FT                 QESLKKSCAEWPIPRSQPPAMDTPSEGKKSTPDCGDNPFLYSKNELVSELD
FT                 KLGLSETQAAGVLSFFNRPSSNSDMVSNDLLSQGAAMGAPRGRKSVGFVEE
FT                 ALDFSVLHSGRREDNTMSDDSLSDASELSTPKHHSDDVSKPIRNRLLKLPP
FT                 FYLYNPYTIVRFLMQLAPIAQRAPNKIKQILSIIADNTENILSANFIYNAA
FT                 AHPHISFDMFSQSLMTHGLGQRQCLQAKTLLLFRPQSEGTDLREYVDTQIM
FT                 LARLFRENDEVQNCKQIVMSLLPKFLMHFGNAETITSYDALYRRLKDVEIC
FT                 VNERSAFSSGQTTIPNFNPDFLKTQYYKSDQDQKSNYGQKNHSDSSSQGQQ
FT                 SNRRWGKNRYH"
FT   CDS           2212..5319
FT                 /product="Gypsy-31_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IIPPPGPPSSPHIFNGLPFLTVQIGTHTTVALLDSGS
FT                 TVSAMSMSYFKTIGTKVFRKLTKNSERTVTSVAGNSVSIAGEGSLKIKFKT
FT                 LSWFVNIVLMDNMPIPLLLGFNFMKQTGLTLDAGSRQISFSYNPLKTYSLL
FT                 SSTSDVLPKDSFPESDSASEDYDDSFSFPTPSFSLVPHSPYRDRYVKKFPD
FT                 VLTDKIGEAKGYFLKIHVRDIPPINSPTYPLNPVDLQKMRSIIDELLAQRI
FT                 IRPACTAWSSPAFLVAKKGTQDKRLVVNYKKLNENIVFSAWPLPKLDDIFQ
FT                 HLHNAAYFTVLDLSQSFFQLPLCPSSQKYTAFKTPFGHFQYLRVPMGISLG
FT                 SQALTEYLEKIFHSIKYKFMWNYVDDIIIYSQTIQDHHSHVSTTLEILRQH
FT                 GLTVKPEKTEFFQTSVVYLGHRIAKNSVSIDPDRIAAVKKFLPPKNLHETL
FT                 SFLGFCSFFAKFIPNFSELAAPLHALKSSGSQLVWTFECQLAFEKLKEILT
FT                 SPPVLALPNFNKKFLLYTDASGIAAGSLLAQEDDQRQTRPIAFFSKKFKGS
FT                 ELNYSAYKKELYAVLLSFRHFRKFLTHNPFCLYTDCSGLVDFLKGDRSRIL
FT                 SNPAVRWITELDSYKFDIVHVKGKSNTVADFLSRFHEGNTESPSSETILFI
FT                 SPLKNLPSFFSDFGTLHKKDPFISSKLDARDSEYVEKNGLVFYVPSRNKSL
FT                 QKIIVPDSMKDPIFDYFHVSSYGAHQGLAKTLNRIKALFTYPEINRDIKAR
FT                 VRACKVCCCVKPNNHPYPQVLHSTPPSRVFERLYVDFIGPLPTSSKGNKFI
FT                 LIAVDGFSKFIFAIPCRNTTSDIVIRSLKNYIFSQHGLPSHLITDRQSCFR
FT                 SAAFRHFLFDLGVTYIANITHYPQSNLAERYIQGLKKCIRAFHGNSQKNWE
FT                 DNLFLFVSALNSSQHESTKSTPSLLFLGRELQHTLILKFHLEDSLTHLSHD
FT                 QLAQLLSNAYDNLIKSYQNRKKRERALTPDDLPKIGDIVYRKTYILANKAK
FT                 NIQVSLSPSFSGPYKVIKIFNRVSYLIELV"
XX
SQ   Sequence 5770 BP; 1699 A; 1307 C; 1021 G; 1741 T; 2 other;
     aatatggtag cagagcccat ggaattttaa atataaaaaa aaaaaaaaaa aaaccaacgc        60
     ttgccttttt tgttcttctc agttttgaag ttgacctcca tcttggaagt tttcatgtaa       120
     gaacaagcca gttcatcgat ctttgtttga aagccttcca tgatttcatg atttttgttt       180
     cactttgcct ttttttagaa atcacccaag gtcatctcct ttctttttta atttttatct       240
     ttgtttcttt tttagaaaat tctatttcat ttttagaaat tctcggagtc tttaaagaat       300
     tattttaaaa tgtctgttcc ttgtggatac tgcgagcagg aagttcctga agcggaatgc       360
     gtcacttgta ccggttgcaa aggatgggta catcttcctt gttctcatat aactatcgcg       420
     aattacaata aacttgcaac tgcattaaaa aagacttttc agggtccatg ttgtaactcg       480
     agcgccagag ataagataag tcgaaattca atggataaac ttctagatag ccgatttaaa       540
     gacttcacga gcggaataga tgcctcatta aagaagatgt cagacaattt gcaggaccaa       600
     attcgaaatc tttcgaagga ctgcagtaag ttgaattcta tgcatacctc cttacaatct       660
     gccttttctg attttgagaa caaatttcga gctctctcga aagatgtttc caatctatct       720
     tcttctcaag agtcgttaaa aaaatcatgt gctgaatggc caattcccag atcgcaacct       780
     cctgctatgg ataccccatc tgaaggtaaa aaatccaccc cagattgtgg ggacaatccc       840
     tttttgtact caaaaaatga acttgtcagt gagttggaca agctaggtct gtcagaaacg       900
     caggctgctg gcgttttgtc cttttttaat cgaccatcca gcaactcgga tatggtgtcg       960
     aatgacctcc tttcccaggg ggccgccatg ggtgctccaa gagggagaaa gtctgttgga      1020
     tttgttgaag aggcattgga tttctcagtg ttgcattctg gtcggaggga agataatacc      1080
     atgtctgatg actccttatc agatgcatct gaattgtcta ctccgaaaca tcatagtgat      1140
     gatgtgtcta agccgattag gaaccgtttg cttaaacttc cgccattcta tctgtataac      1200
     ccttacacga tagtgcgttt tctaatgcaa ttggcaccaa tcgctcagag agcaccaaat      1260
     aagataaaac agatcttatc catcattgca gacaatactg aaaatatcct gtccgcaaac      1320
     ttcatttata atgctgcggc tcatcctcat atttcattcg atatgttcag tcagtcgtta      1380
     atgacccatg ggctaggtca acgtcaatgc ttgcaagcaa agacactgtt acttttccgt      1440
     cctcagtcag agggtactga cttaagagag tatgtggata ctcaaataat gttggcccgt      1500
     ttgtttaggg aaaatgatga ggtccaaaat tgtaaacaaa tagtcatgtc cttgcttcct      1560
     aaattcctca tgcattttgg caatgctgaa acgatcacct catatgatgc cttataccgc      1620
     aggctaaaag acgtagaaat ttgcgtcaat gagcgatcag ccttctcctc gggacaaacg      1680
     accattccca acttcaatcc agatttccta aagacccaat actataagtc tgaccaagac      1740
     cagaagtcca actatggaca aaaaaaccat tctgacagct ccagtcaagg tcaacagtct      1800
     aaccgtcgct ggggaaaaaa ccggtatcac tgaaattatc aacaagggaa atatgatcgg      1860
     aatagtttca atgctccatc cacttctcaa agtgatacta atcgggataa ggtttcccaa      1920
     gacaaaaatg gccaaaacaa ccatgaatat ggcaacaggc ctcataaaaa aaattcccaa      1980
     agcgattaca acgctaatta caaaaaaaac aaaaataaac cctttcataa gggaaagcag      2040
     gatcaaacct tcgtatcctt agctgacaca atgcagcagt ttttacagct gcaaaagatt      2100
     ttcaccaatc aggaaaatca catcgtgaca cctcctaatc cagcccctac ggcttcaact      2160
     gctcctgctg agcagaagcc gaaacaaaaa aaacagaacc aaaaaaacta gataattccc      2220
     ccccccggcc cgccgagtag tcctcacata ttcaacggac taccctttct taccgtccaa      2280
     attggaacgc acacaacagt cgcgttattg gactcaggtt caackgtgag tgccatgtca      2340
     atgtcttatt tcaaaaccat tggtaccaaa gttttcagaa aactcacaaa gaactctgaa      2400
     aggacagtga cctcggtggc cggcaattcg gtgtccattg cgggggaggg ctccttaaaa      2460
     ataaaattta aaaccttgtc atggttcgtc aacattgttc tcatggacaa catgccaatc      2520
     cctttattgt tgggttttaa ttttatgaaa caaacaggct tgaccctgga cgcaggctca      2580
     agacagattt cgttttcata taaccctctc aaaacctact ccttgttgtc atcaacttcc      2640
     gatgtgcttc caaaagattc tttcccagaa tccgattctg cttcggaaga ttatgatgac      2700
     tccttttcct ttcctacccc ctcattttcc ttagtccccc acagccctta tagggatcga      2760
     tatgtgaaaa agtttccgga cgtcttaaca gataaaatag gcgaagccaa gggctacttc      2820
     ttgaagattc atgttaggga catacctcca attaattcgc ctacgtatcc tctgaacccg      2880
     gtcgatctgc aaaaaatgcg ttctattata gatgagcttc tggctcaacg gattattcgt      2940
     cctgcttgta cagcatggag ttcccctgcc tttttagttg ccaaaaaagg gactcaagac      3000
     aaacgccttg tcgtaaacta taaaaagttg aacgaaaata tcgtcttcag tgcatggcca      3060
     cttcccaaac ttgacgacat ttttcagcat ctgcataatg cggcttactt cacggtactt      3120
     gatttatcgc aatccttttt tcagttacct ctctgcccct cttcgcagaa gtatactgct      3180
     tttaaaacgc cctttgggca tttccagtac cttcgtgttc ctatgggtat tagccttggt      3240
     tcacaagccc tcacagaata cctagagaaa atctttcatt ccataaagta taaattcatg      3300
     tggaattatg tcgatgacat tattatctac tctcaaacga ttcaagatca tcacagtcat      3360
     gtgtcgacaa ctctagaaat cttgaggcaa catggtttaa cagtcaaacc tgaaaaaacc      3420
     gaatttttcc agacttcggt agtatactta ggtcatcgca tagcaaaaaa ttcagtatcc      3480
     attgacccgg atagaatagc tgcggtcaaa aagtttttgc cgccaaaaaa ccttcacgag      3540
     accttgtcgt tcttgggttt ctgctccttt ttcgcgaagt tcattccgaa cttttctgaa      3600
     ctcgctgctc ctcttcatgc attaaagtcc tcagggtcgc agttagtatg gacctttgag      3660
     tgccagctcg cttttgaaaa gttaaaagaa attttaacat cgcctcctgt tttggccttg      3720
     ccaaatttta ataaaaaatt ccttttatat acagatgctt caggcatcgc ggcaggcagt      3780
     ctgctggcac aggaggatga tcaacgtcaa acgagaccaa tagccttctt ctcaaagaaa      3840
     tttaagggct cggagttaaa ctactctgca tacaaaaaag agctctacgc agtgttactg      3900
     agcttcagac acttcagaaa gtttttaact cataatccct tctgtctata cacagattgc      3960
     agtggactag ttgatttcct taaaggtgat aggtctagga tccttagcaa cccagcagtt      4020
     aggtggataa ccgaattaga ctcctataaa tttgatatag tccatgttaa gggtaagagc      4080
     aacacggttg ctgattttct ttctcgtttt cacgaaggaa acacagaatc cccttcaagc      4140
     gaaacgattt tatttatttc gcctctaaag aatctacctt cctttttttc agattttggt      4200
     actctccata aaaaagatcc ttttatttcg tcgaagttag atgctcgaga ttccgaatac      4260
     gtagagaaaa acggtctcgt tttttatgtt ccttctcgaa ataaatcctt acagaaaata      4320
     atcgtgccgg attccatgaa ggatcccata ttcgattatt ttcacgtaag ttcgtatgga      4380
     gctcaccaag gtttggctaa aaccttgaat agaataaaag ctctgtttac gtatcctgag      4440
     atcaatcgag atatcaaggc cagggttcgt gcttgtaaag tctgctgttg cgtcaagccc      4500
     aacaaccatc cctaccctca ggtgcttcac agtactccac cttcacgcgt ctttgaacgc      4560
     ttatacgtgg atttcatagg tccacttccg acttcctcca aaggaaacaa gtttattctg      4620
     atagctgtcg atggatttag taagttcatt tttgctattc catgtcgtaa tacgacatca      4680
     gatattgtca tccgatcgct aaagaattac attttttcac agcacggact tccttcgcac      4740
     ttgattacag atcgacagtc atgcttcaga tctgcagcct tccgtcattt cttatttgac      4800
     ttaggcgtaa catacattgc caacataacg cattatccgc aatcaaattt ggcggagcgt      4860
     tatatccaag gcctaaaaaa atgcatacgt gccttccatg gaaattctca aaagaactgg      4920
     gaagacaatc tttttctatt cgtatctgcg ttgaattcat cccaacatga atcgactaaa      4980
     tctactccgt cgctgttgtt tctggggcga gagttacaac atacactgat tcttaaattt      5040
     catcttgaag attcacttac ccacctttct cacgatcagc ttgcacagct gttaagcaac      5100
     gcttatgaca atctcattaa atcataccaa aataggaaaa agcgcgaacg cgccttaaca      5160
     cctgatgatt tgccaaaaat cggcgacata gtataccgta aaacttatat acttgccaac      5220
     aaggcaaaaa atatccaagt ttccctttcc ccaagttttt cgggtccata caaagtcata      5280
     aagattttta accgggtatc atatctcata gaacttgtat gaaatccgaa cataaaggtt      5340
     catgcgcatg tgacccaatt aaagagagga gatacctcac agatcaccaa tgatgactaa      5400
     ttctcctgaa gccaatatca tgaaatcata ctttaattaa taaaaaaaat tttttttttg      5460
     ttttgtcaag tgcttctagc atatgttcgt cttaaagact gtcctctgta caatcctttg      5520
     tcctttgtac acttattaat gaaacttttt tttagccttt atatacttta catcttgtat      5580
     ttttgtacgt atttttgtac ctcgtctaat tctggakgcc tcgcctacta taataattgt      5640
     gaatcccctt ccctacgtcg acagcggcat cttcaaaatg cgtcgttctt cagaagttca      5700
     tcgctcatcg ttcatcgcta agttcagcat ttttcttttt ttcttttctt ttgtgcgtcg      5760
     gaggagtatt                                                             5770
//
ID   Gypsy-31_OrIn-LTR repbase;    DNA;    INV; 667 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-667
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1537-1537 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 667 BP; 170 A; 157 C; 129 G; 211 T; 0 other;
     tgtgaccaaa aatgacgtca ggacagacgt cacagcctcg gggagaggaa ggagaacgat        60
     ccggatctat tcgccattcg agtttggact acgaaaaggt acgccggccg gtctcgcttc       120
     ttcttgaaat cttcatccgt tttcatccgg tgatttcatc agttttttta atcttgaagt       180
     ttcgggttct ctttttttca tcgccctgtg ttttttctct cccgtgtaaa aagcagaaaa       240
     taagggacgg gccgtcttca ggacttggtg tccgaccctc tcgccgctcg tcgagtcatc       300
     gttttttacc aacacgacgg tttttctttt tttcattgct ctgtgttttt tcttctcgcc       360
     gtacccaaaa gaacgaaaaa agagccgagc gacaaccgca acttcgagac ttcttccggc       420
     gttcaactcg tcgccacgtg cagcgaactt ccaacatttc ctaaatttgt aaaggcgagg       480
     tacattttta aaacaatcaa aaaattcaat tctttttctt atataaaaag cgttatcaac       540
     aatatctttt ttttatccaa tcctttaaaa cagagaagga agaaaaggta agttgggcga       600
     tccacccgag acaacgtctc actttttttt tgctgatttt tatgcgatta cttccacgat       660
     cgtcata                                                                 667
//
ID   Gypsy-31_SI-I repbase;    DNA;    INV; 4485 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_SI_;
KW   Gypsy-31_SI-LTR; Gypsy-31_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4485
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 452-452 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2103-2561] - Reverse transcriptase
CC   Positions [3598-4074] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1759
FT                 /product="Gypsy-31_SI-I_2p"
FT                 /translation="MERLEQIKVIANNLKTGSTKAVRALHKLIFEREGDRS
FT                 NRKRLREFAGFAFASGSDEYKSKLAYADTNLGRGDLVAICNILTIDYAGTK
FT                 RELSQRICEYLMDLNSLDKANEDRMDAEENVTEDNDELDDEDDEEEVEEAH
FT                 DEEDENEANDENNDDEDAAENRQAGRNKKTTKNKFSMTFRDVEDSIRPFSG
FT                 DEKYPVERWILDFEETAELFEWTDIQKMIFAKKSLRGLAKLFIQGERGLNT
FT                 WKKLKKALEDEFSDKMNSAELHRQMEKRKMKKDESVLAYFLAMKEIAARGE
FT                 IEEEALFQYTIDGIDDQLTNKSILYGARNKKEFKDKLKIFEKIRTKNAATN
FT                 KSSNPTTVKKITKLKEETRCFNCGDLGHKSTTCENKNKGTKCFKCNEFGHK
FT                 SFDCKKEKPKKMKEDNNEDTRKIETINSLSAPKGMHKTIEIKNKKFRALID
FT                 TGSQLNILNQSSHKKIGSPTLSNSTLCFSGFGGSRVAPIGHFEDVISIDDE
FT                 QFQSTIYVVNDDAMTTEAGRRKRTVITSQSDHKSRKHHY"
FT   CDS           1920..3551
FT                 /product="Gypsy-31_SI-I_3p"
FT                 /translation="MSITISENQKIFARPRRLPFHEREIVAEQVEEWIHEG
FT                 IVEPCSSEYASPVVVTKKKDGSSRICIDYRAINKIIIKDRYPLPLIEDIVD
FT                 RLQDANVYNSLDLKNGFFHVPVNKDSQKYTAFVTHGGQYQFRKVPFGLCNS
FT                 PAVFQRFINKIFSDMTTKRIVLPYIDDLIIPAKNEEDAIEKLKLVLKRAEE
FT                 YGLEINKKKCQLLKRRIDFLGHVIEEGKLFPSTEKTRAVLNFPEPKTTKQI
FT                 QSFLGLTGYFRKFISQYSTIAKPLSDLLKKKQNFRFGKEEEDAFKKLKQCL
FT                 AAEPVLSIYNREYETEVHTDASQSGYGAVLLQKQPKDGKLHPVYYMSKETS
FT                 DVEQKYSSYELEALAIVEALKKLRIYLLGKPFKIVTDCAAFQQTMRKKDLT
FT                 PRIARWAMFLEEFDYNIEHRAGTRLRHVDALSRHPVMVIKSHDITPRMKKA
FT                 QEEDEVIKNIKKLLKKGPYQDYILKNELVYKQAQGYELIMVPTAMQDEIIK
FT                 SAHEKGHFATKRTEESIKQEYFIPNLHAKIERCMQTARYCKLREVHTD"
XX
SQ   Sequence 4485 BP; 1706 A; 856 C; 987 G; 936 T; 0 other;
     atattggggg cttgtcagcc gggatttggt ctcaggaaag aaagcggtga gtacaacgac        60
     gccagaaacg tcgaaaaatt tcgaggttag attgacggtg ctatcgacaa gagtgaaagt       120
     gctttccaag aaagacgatt aagacgctac gacgatggaa agacttgaac agatcaaggt       180
     catagccaac aacttgaaga cgggctcgac gaaagcggta agagcactac acaagttaat       240
     ttttgagcgt gagggagatc gcagcaaccg gaagcgattg cgcgagttcg ccggtttcgc       300
     gttcgctagc ggatcggacg aatataagag taagttggca tatgcggata caaacctcgg       360
     acggggagat ctggtagcaa tctgcaatat tctaacgatt gattacgcag ggacgaagcg       420
     agaattgagc cagcgaatct gcgaatacct aatggatctc aactcactag acaaagcgaa       480
     cgaagataga atggacgctg aagagaacgt tacagaagac aacgatgaac ttgacgatga       540
     agacgacgaa gaggaagtag aggaagctca cgacgaagaa gatgaaaacg aagcgaatga       600
     cgagaataat gacgatgaag atgctgcgga aaatagacaa gcaggtagga ataaaaagac       660
     gacaaaaaat aaattttcca tgacattcag ggatgtagag gattcaatcc gaccatttag       720
     tggagatgag aaatatccag tggaaagatg gatcttggat tttgaggaga cagcggaact       780
     tttcgaatgg acggacatac aaaaaatgat ttttgccaaa aaatcattac gaggcctggc       840
     gaaactattc attcaaggcg aacgaggact aaacacatgg aaaaaactga aaaaagcact       900
     cgaagatgaa tttagcgata aaatgaacag tgctgaactg cacagacaga tggaaaaaag       960
     gaagatgaag aaagatgaat cagtactagc atacttttta gccatgaaag aaatagccgc      1020
     cagaggtgag attgaagaag aagcactatt tcagtataca atagacggca ttgacgatca      1080
     gttaacaaat aaaagcatac tgtacggagc aagaaacaaa aaagaattta aagacaaatt      1140
     gaaaatattt gagaagataa gaacgaagaa tgcagccacg aataaatcgt caaatccaac      1200
     cacagtaaag aagattacga aactaaaaga agaaacgcga tgtttcaatt gcggcgattt      1260
     aggacacaag tcgacgacgt gcgaaaacaa aaataaaggc accaagtgct tcaagtgcaa      1320
     cgaatttggt cacaaatcat ttgattgcaa gaaagaaaag ccaaaaaaga tgaaggaaga      1380
     caacaatgaa gacacaagga aaatagaaac aataaatagc ctgagtgctc ccaaaggaat      1440
     gcacaagaca atagaaataa aaaataagaa gttcagagca ttaattgaca ccggaagtca      1500
     gcttaatatt ttaaatcaaa gctcgcataa gaagataggg tcaccgacat tatcaaattc      1560
     aacgctatgc ttttctggat ttggcggaag cagagtagca ccaataggac attttgaaga      1620
     tgttatttca attgatgacg aacagttcca atcaacgatc tacgtagtga atgacgacgc      1680
     tatgacgacg gaagctggtc gtaggaaacg aactgttatc acaagccaaa gtgaccataa      1740
     gtcaagaaaa catcattatt aatagaatat ttgaagaaaa taatatcctt tctccaaatt      1800
     acgttgtcga attagactca cctaccgttg aacatacagt ctgcaaagaa aagcaaaagg      1860
     aagttcaaga cttattagac aattatacac caaggaagat taaagaatct gatatcgaga      1920
     tgagcatcac aataagtgaa aatcaaaaaa tattcgcgcg accacgacgc ctaccgttcc      1980
     acgagaggga gatcgtagct gaacaagtgg aagaatggat tcacgaaggg atagttgaac      2040
     cgtgctcctc agaatacgcc agtccggttg tagtaaccaa gaaaaaagac ggatcatcaa      2100
     gaatttgtat tgattacagg gcaatcaaca aaataataat aaaagatcgt taccctctgc      2160
     ccctcataga agacattgta gatcgactac aggatgccaa tgtttacaac tcgctggatc      2220
     tgaagaatgg attcttccac gtgcccgtga acaaggattc ccaaaaatat accgcattcg      2280
     tgacacacgg aggacagtat caatttcgga aagtgccatt cggcctttgt aactctccag      2340
     ctgtcttcca gcgattcatc aacaagatct ttagtgacat gacgacaaaa agaattgtac      2400
     tgccgtacat cgacgacctg ataataccgg caaaaaacga agaagatgcc atagaaaaac      2460
     tgaagctagt attgaagaga gcagaagaat acggactaga gatcaacaag aagaaatgcc      2520
     aactacttaa acgacgcatt gactttttgg gtcatgttat tgaggaggga aaattatttc      2580
     cttcgacgga aaaaacaaga gcagtcttaa attttccgga gcccaagacc accaaacaaa      2640
     tacaaagttt tcttggactc accggatact tccggaagtt tatctcacaa tattctacaa      2700
     tcgcaaaacc tctgagcgat ttgttaaaga agaaacaaaa ttttcgattt ggtaaggaag      2760
     aggaagacgc atttaagaaa ttaaaacaat gcctagctgc agaaccagtt ttgagcattt      2820
     acaaccgtga atatgagact gaagtacaca ccgatgccag tcagtctggg tacggagctg      2880
     tgctattgca gaaacagcct aaggatggga aactacaccc tgtgtactac atgagcaaag      2940
     agacgtcgga cgtagagcaa aaatattcta gttatgagct cgaagcacta gcaatagtgg      3000
     aggcgctgaa aaaacttcgt atctaccttt taggtaagcc atttaagatt gttacagatt      3060
     gcgctgcttt ccaacaaacc atgcggaaga aagaccttac accccgaata gcaagatggg      3120
     ctatgttctt agaagagttc gactacaaca tcgaacatcg agctggtaca cgactgaggc      3180
     acgtggatgc gctcagccgt caccctgtaa tggtcataaa atctcacgac attactccaa      3240
     gaatgaagaa ggcacaagaa gaggatgaag tcatcaaaaa tattaagaag ctactaaaaa      3300
     aaggaccata tcaagattac atactaaaaa acgaattggt gtacaaacaa gcccaagggt      3360
     acgaattaat catggtgccc actgctatgc aagatgaaat tatcaaaagt gcgcatgaga      3420
     agggacactt cgcaacaaaa agaaccgaag aaagcataaa acaagagtat tttatcccca      3480
     atctgcatgc taaaatagag agatgtatgc aaactgcgcg atattgcaaa ctgcgtgaag      3540
     tgcatactga ttaataagaa gttaggcaaa tctgaaggat acctacatcc attaaataaa      3600
     ggagatactc cgctgcagac ttatcacata gaccatttag gaccattaga aacgacccac      3660
     aaaaattata agcatattct agcaatcata gacgcattca ccaagttcat atggttatac      3720
     cctacaaaaa cggtaacttc cgaagaagtc attgagaaaa tggaactaca aaaaagcgtc      3780
     ttcggaaatc caaaacgaat aatttctgat cgaggtaccg cctttacctc tgccgagttt      3840
     gaggattact gtttaaatga agatattgaa catgtcaaaa tcacggtggg cttaccacga      3900
     gctaacggac agatagagag gattaacagg acaattatcc cagtgctagc caaaatgtcc      3960
     atagacgaac cgacgaaatg gtacaagcac gttgcaagac tgcaacaagt cttaaattcc      4020
     acgtatcaac gaagcatcaa cactactcca tttgagctgc tgataggaac caagatgaag      4080
     actaaagacg accttaccat gaaggaggca atcgagcaag aaatgacaca ctattacgaa      4140
     gatacaagaa agcaattaag agacgacgca agaaaacaaa tcgaaaagat acaacttgaa      4200
     aacaaaaaac gttacgattt acgacgtaga gatcccaaca agtaccatat cgatgacctg      4260
     gtggccatca agcgcacaca agcaggacct ggattaaagc tgaaatccaa attcctagga      4320
     ccgtatcgta tcgtcaaaat aaaacctcac gatacatacg atgtcatcaa agttggaagc      4380
     tgcgaaggac cgacaaggac cacgacatgt accgagtatt tgaagcgttg gcctggagga      4440
     gactcggatt catccgaggc ggatgatagt tcaggacggc cgaga                      4485
//
ID   Gypsy-31_SI-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_SI_;
KW   Gypsy-31_SI-I; Gypsy-31_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-214
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 453-453 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 214 BP; 66 A; 51 C; 46 G; 51 T; 0 other;
     tgtgggaaga aggagaatag aacagacgcc cgtacagagg gcgtcaggct agaacgagtt        60
     accgatgaat aacagaacag actagagaga gagagacgct cgcgtatccg catcgctgtg       120
     aaaacacgct ttttccccga aaatatatct gttgttagat actcaaccct tttctctttc       180
     tgagtttacc ttacttacaa ccatcatccc taca                                   214
//
ID   Gypsy-31_SiCu-I repbase;    DNA;    INV; 4023 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4023
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5053-5053 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..3974
FT                 /product="Gypsy-31_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTDTPFTAPAAFSFDAREWPKWKTRFEHYRLLSKLKD
FT                 KDEEFQIHALIYSMGEKADEIMASFKLTDADKKKYEKVLAAFENHFVGKRN
FT                 VVYERAKFGMRNQQEGESIEKFVTALHTLSEHCEFETLRESLVRDRIVLGV
FT                 LDKQLSQKLMLMEKLDLQKAVEMATQWETIKSQHKEITGDEEKKIDRVQNF
FT                 KSKNKHYNKNKSTNSSGEDKKDNKCTRCGKNKGHKQCPALESQCNKCNKTG
FT                 HWAAMCRSKAVNRVEEEPDKKALLDAVTTSEKDREDKWTAAVQVGSQEINF
FT                 KLDPGADVVVIPYITFKKLWKKRKLEKSDCSLRGPDGTKIQAVGMFEAELK
FT                 YKNVKIKDTIYVVRELTQPLLSRRACEDLALVKRIHQVEVRQTDVEPTKEY
FT                 PKLFKGLGKIDSPYKIKLKEGARPYATSAPRRVPLPLMDVVKKKLEDMVSE
FT                 GVISRVEEPTEWCSPMVIASKANGDIRLCVDLTKLNQCVERELHPMPVVEH
FT                 TLGQLAGAKVFSKLDANSGFYQITLDEESMKLTTFITPIGRFMFRRLPMGI
FT                 TSAPEHFQKRVSQILEGITGVVVHMDDVLVHGKNKKEHDQRLREVLKRLQV
FT                 AGITLSKAKCKFGVPEVKFLGHVINEHGVRPDPAKVEAIVNMKAPADVTDV
FT                 RRILGLVNFVGKFVPTLSDTLRPLYQLLCEDKEFVWEEPQKAAFQKLKDIL
FT                 TNGPVLVLYDPQKETKVSADSSSYGLGAVLLQKQDDGHMKPVSYASRTLTS
FT                 AERRYAQIEKEALAITWACERFKDFVTGLHFRVETDHKPLLQILGSKELDD
FT                 LSPRLQRFRMRLMRFSYSVEYLPGKQLITADLLSRHPLPETGELEAEKDIA
FT                 AQVNLLLAHLPASDERLAEIVQEQHKDTTVNKLASYAENGWPERSKVDSEC
FT                 LKYWSVREDITVQDGLVMRGCRILIPVKMREEMLGKIHSGHMGIVKCRARA
FT                 RESVWWPGISEQIAEMIKRCPVCIQDRSDRHEPLIPSEFPERPWQKVGMDL
FT                 FKLDGKWYIVLMDFYSRFPEVAELSKLTAAAVINKCQSFFSRHGVPEEVRS
FT                 DCGTQFKELEKSEFQIFAKEYGFIHRTSSPRYPQSNGFAEAAVKTVKTLIK
FT                 KNKDVYKALLEYRATPLSNGYSPAELLMGRRIRTTLPINPHRLVPEGVDQA
FT                 KLKEREEIRRNKQKNDYDKRHGVREKDDLKKGDAVWVKDLRTWGTIASKLQ
FT                 IPRSYLVDTPRGQFRRNTFHLVRAFGQDVAFSADAGSESTAEQGVELQEQV
FT                 PAQVRGPERSGPYRTRSGRQSRPVRRYPN"
XX
SQ   Sequence 4023 BP; 1248 A; 800 C; 1076 G; 899 T; 0 other;
     tggtggcagc ggttaactga atcattaaaa gttaattttc gagagtgatt gacagggata        60
     ctaaattttt ttgagtgatc gcctgcaagt gacacgatat caaaatgact gacaccccgt       120
     tcacggcacc tgcagccttt agtttcgacg ccagggagtg gccaaaatgg aagacacggt       180
     ttgagcatta ccgtttactg tccaaattga aggataagga tgaagagttt caaattcatg       240
     ccttaatcta ctccatgggg gaaaaggctg acgagatcat ggcctcattc aaattgactg       300
     atgcggataa gaagaagtac gagaaggtgc ttgctgcgtt cgagaaccat ttcgtgggaa       360
     aacggaacgt tgtctatgaa cgagccaaat ttggaatgcg gaatcaacaa gagggggagt       420
     caattgaaaa atttgtcaca gcgcttcaca cgttgtcaga gcactgcgag ttcgagactc       480
     tacgcgaaag cctcgtgagg gataggatcg tgctgggtgt tctggacaag caattatcac       540
     aaaagttgat gttgatggag aaactcgacc tccagaaggc tgtggaaatg gcaactcagt       600
     gggagacaat caagtctcag cacaaggaaa tcaccggtga tgaagaaaag aagatcgacc       660
     gagtccaaaa tttcaaaagc aagaataaac attacaacaa gaacaagtcc accaacagta       720
     gtggtgaaga caagaaagac aataaatgca caagatgtgg caagaacaag ggtcataagc       780
     agtgtccagc tttggaatct cagtgcaata aatgcaacaa gactggccat tgggcagcga       840
     tgtgtcgttc caaagctgtt aaccgagttg aggaggagcc agacaagaag gcactactag       900
     acgcggtaac aacttccgag aaggatcgcg aggataagtg gacagctgca gtccaagttg       960
     ggtcccaaga gatcaacttt aaacttgacc ctggagcgga tgtggtggtc atcccataca      1020
     tcacgttcaa gaagctgtgg aaaaagcgga agctggagaa atcagattgc agtctgcgtg      1080
     gtccagatgg aaccaagatc caagctgtag gaatgtttga agcggagctt aaatacaaaa      1140
     acgtcaaaat taaagacaca atttatgttg tgcgtgagct aacccaacct cttttgagtc      1200
     gccgagcttg tgaggatttg gcattggtca agaggatcca tcaagtcgaa gtacgtcaaa      1260
     cggatgtgga gcctacaaag gagtatccca aactattcaa ggggttggga aaaattgata      1320
     gcccgtataa aatcaagttg aaggagggag cgcgacctta cgcaacatca gcacctcgtc      1380
     gtgttccact gcctcttatg gatgtcgtta aaaagaaact ggaagatatg gtcagtgaag      1440
     gcgtcatttc gcgagtggag gagcccactg aatggtgctc gccaatggtg attgcatcaa      1500
     aagcaaacgg cgacatcaga ctatgcgtgg acctgacaaa gctgaatcaa tgtgtcgaga      1560
     gggagctaca tccaatgccc gtcgtcgagc acactttggg acagttagcg ggagcaaaag      1620
     tgttctccaa actggacgcc aacagcggat tttatcaaat aacactggat gaggagtcta      1680
     tgaagcttac cacgttcatc actccaattg gaaggttcat gtttcgaaga ttgccaatgg      1740
     gaatcacatc agcaccggag cattttcaaa agcgagtcag tcaaatcttg gagggaataa      1800
     ctggcgtcgt agttcatatg gatgacgtgc tggtccatgg aaagaacaaa aaagagcatg      1860
     accagcgact ccgagaagtg ctgaaacgac tacaagtggc tggaatcaca cttagcaaag      1920
     caaaatgcaa gtttggagtt ccagaggtga aatttttggg ccatgtcata aatgaacatg      1980
     gagttcgacc agatccggcc aaggtggagg ctattgtcaa catgaaagct ccagccgatg      2040
     tcactgacgt gaggaggatt ctgggtcttg tcaactttgt tgggaaattt gtccctacct      2100
     tatcggatac gctgaggcct ctttatcaac tattatgcga agacaaggaa ttcgtttggg      2160
     aggagcctca gaaagcagct tttcagaaat tgaaagacat tttaacaaat ggtcccgtgt      2220
     tagtgctgta cgatcctcag aaggagacca aggtatctgc tgattcgagc tcttatggtc      2280
     ttggcgcagt gttactccag aagcaggatg atggacacat gaagccagta tcgtacgcgt      2340
     ccagaacact aaccagtgct gagagacgtt acgctcaaat agagaaagaa gcgttggcaa      2400
     tcacgtgggc atgtgagcga tttaaggatt tcgtcacagg attacacttc cgggtggaga      2460
     cggatcataa gccgttattg caaattcttg gctccaaaga gcttgatgat cttagtccca      2520
     gattgcaacg attcaggatg aggctgatga ggttctcata cagcgtggaa tacctacctg      2580
     gaaaacagtt aattacagca gacctgcttt ccagacatcc cttgccagag acaggagagt      2640
     tggaagcaga gaaagacatt gcagcgcaag taaatctttt gttggctcac cttccagcgt      2700
     cagacgagcg gttggcggaa attgtccagg agcaacataa ggatacgaca gttaataagc      2760
     tggcatcata tgctgaaaac ggatggcctg aaaggagcaa agttgactcc gaatgcttaa      2820
     aatactggtc agttcgagaa gacatcacag tgcaggatgg attggtgatg cgcggctgca      2880
     gaattttaat cccagtgaag atgcgagaag aaatgttagg gaaaatccac agtggtcaca      2940
     tgggaatagt aaagtgccga gcgagagcgc gggaatctgt gtggtggcct gggatttccg      3000
     aacaaatagc tgagatgatc aaaagatgtc cagtatgcat ccaggataga agcgataggc      3060
     acgaaccgct tatcccatcc gagtttccag agagaccttg gcaaaaggtc gggatggact      3120
     tatttaagct ggatggaaaa tggtacattg tgttgatgga cttttactcg agatttccag      3180
     aagtagccga gctatcaaag cttaccgcag cagcagtcat caacaaatgt caatcatttt      3240
     tttcgcgaca tggagttccg gaagaagtac ggagtgactg tgggactcag tttaaggaat      3300
     tggaaaagtc cgagttccag atatttgcga aggagtacgg gttcattcat cgtacgtcca      3360
     gtccccggta ccctcaaagt aatggatttg cagaggcggc agtgaaaacc gtgaagacat      3420
     taatcaagaa aaataaggac gtatacaagg cgttgttgga atatcgcgca actccattga      3480
     gcaacggata tagtccagca gaattgctaa tggggcgacg gatcagaacg acattgccaa      3540
     ttaatcctca ccggttggtt ccagaaggag tggatcaagc caagctgaaa gaaagggagg      3600
     agatacggcg aaataagcag aagaacgatt atgacaagcg gcatggcgtt cgagaaaaag      3660
     atgacctcaa gaaaggcgac gcggtttggg taaaggacct gaggacgtgg gggaccattg      3720
     caagtaaatt gcaaattcca agatcatact tagtggacac tcctcgtggg cagttcagga      3780
     ggaacacctt tcacctagtt cgtgcgtttg gacaagacgt tgctttctcc gcagacgccg      3840
     gaagtgaaag tacagcggaa caaggagtcg agttgcagga acaagttcca gctcaagttc      3900
     gtggaccaga gcgaagtggg ccataccgta ccaggtctgg tcgccaatct cgtccagttc      3960
     gacgataccc taattagtta agataaagtt aacaaatcaa attaattatc ttaaaagggg      4020
     gga                                                                    4023
//
ID   Gypsy-31_SiCu-LTR repbase;    DNA;    INV; 260 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-260
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5108-5108 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 260 BP; 74 A; 47 C; 53 G; 86 T; 0 other;
     tgtggaataa agtcttagtt taccccaatg aaagcggtat atgtaattcg tgtaacatgc        60
     ggtgtgcatg cagctagttc taagatgatg caatgtaatt tggtatcagt ccgactctgg       120
     ctgcctgttc gtgttctcaa taaagtacat aatattttag cgaatattaa cgtgcactat       180
     cactgctcat ttatttaaat attcatagtt gcgtttgtac tcgggtcata ggctacgcta       240
     ttagagtacc aaacgacaca                                                   260
//
ID   Gypsy-31_SiOr-I repbase;    DNA;    INV; 5626 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5626
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 365-365 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..5090
FT                 /product="Gypsy-31_SiOr-I_1p"
FT                 /translation="MAYVDSDGDEFFDSFETLDETEVEDFSPLHHPKQYIY
FT                 QDVPENYVYPNYTFQECYKFTSRPTQHCPSSETXXEVPPVYDYTPFNNKCH
FT                 FQQHSSEQNDKFYQSSLIENSLPKINITNKSNHIQTKTPEYPQNHQDMSRE
FT                 FLSAVQMIAQNFHKKEIIYPTFTGNESEDPTVFLKNLEELFRQERVNIKER
FT                 TNIAASLLKGPAQQWYQPYKHIALSWEMFKSQFMDAFSNTAVIAHLTTQLY
FT                 GEKQKTNESAIVFITKKQGLFYRLIPQASEIHLINIIMEQLVPDIRSRLRG
FT                 LQFNTIQKLLQVVTAIEKDLTYTHLNQQYTTKESSIEDLNRATQNKLRQEN
FT                 RPHSACKYCGAWHFHKDCSRNPYNQRSQEQTVTSNRRDHVNGHQPNQQEHS
FT                 SANHTLQENGEGRTEACSWPSLNMFSAGSISIADLSKQTPKIMIKFNNVYI
FT                 NALADTGASVNLISSQFFSELPNSYKQIVKIGCGTVEMDIHGIFELEYTVL
FT                 DVTLNSKFLIVPNLSEECILGYPWFLEQQVVLDTVRSCMYFGKNIRRTIYF
FT                 ANGTPPSGTVINNISLNHLDDLIKDQYEAILDEYSYLFDESLKRPVTRTIE
FT                 HDIRLNSNKPIKIKPYPLSEHKKRIMNEQIQEMLSAGVIESSISPYSSSPV
FT                 IIERPDKKPRFCVDYRALNQVTEDEFTKLPKVHETLKELGVAKIFTSLDLR
FT                 SGYWQVGLSERSKPLTAFSTPDGGHYQFTVMPFGLKNAPTSFQKLMSEEVL
FT                 TGFLHKFALVYLDDIIVYSRNHEEHLKHLHLILERLSLHGLQISPKKCHIA
FT                 KNNLNFLGHHIKGDCNTPQEYHLNEILNYPTPKNKKQLQSFIGTINWLREY
FT                 VFGLSILTAPLVDLLCKKAKWKWTEVEQRAFDATKNAFSQPLKLHRPDPTL
FT                 PFLLQTDASDLGMGAVLFQEGEGGKKQVISYSSARLNMTERKYHINEKECL
FT                 CIVWAIKKYRQFLEDRKFKLITDNRALLWLNKYRDSKAKLTRWSLLLSEFN
FT                 FDIEHCPGKLNLFPDFLSRNARNEQTSLTEYDMSRLIPPENRQDQKFEINN
FT                 SNLIHLNYLAPIDDSSLYKNICLAQTTDPELRQKVSRWNFLQSNLSCSSND
FT                 RQLLNNYLVKDDLLFKQDTGQVIVPTNVIERVLYFYHDSPWAGHPGRDEMF
FT                 NTINQYYYWSEMRSDISKYTKNCLVCLSVKGRNLQQSATMTAHVATNPGEI
FT                 FSIDIMGPYPKTGSGCRFLITVEDLFTRWVEAKPVPTVRSKDIIHFLNNEV
FT                 CCRLGYPKTIISDNGTQFMSENWKNFCKEYHINHVTSPIYHQRANPVERRN
FT                 QEIKKVLKAQLFNKNTQNWDKRLPRCLFCLRNRTNAATGLSPAMSLLGYSL
FT                 SAPGERDHPKFAVPVINRGHMREQRLQKARENQEAYQGKYTNGMSRHPTFQ
FT                 SGDQVLVRSMTTKPGEAFNPAWEGPFTIISPLSEAVYFVSRNGVDCKIHID
FT                 DIRPIPPERLLSFQKNPKVGSFTSVSSEELEEENREYGISPQSSNPDMELE
FT                 NVMKYLDRSSIEIEVCSDNSSVSSWNSDDSKPTCILPDQYPKLTTRTRKAP
FT                 IFLNDYVCN"
XX
SQ   Sequence 5626 BP; 1936 A; 983 C; 958 G; 1747 T; 2 other;
     tggcgcccaa tacgtgtggc ctgaatagaa cgattctgtt cggatctacg actgtaattg        60
     taatatatac ttatatgatg tgattttgat tgtaaataaa gaaaatattg tgttttattt       120
     agttttaagt atatatatct tttggtttac gactgattct ttcaatgttt cccagtacct       180
     aaattagaca atttgacctt gaaaaaattt tgaaatattg gatatttcac aataactttt       240
     aattttcttg caattggagt tggtttcatc aagttttagt taaaatattc ttataatcga       300
     gtatccttat cattaaaaac attcccgtaa agatatttag agttttgaga atcggtttga       360
     cgatggccta cgttgatagt gacggtgacg agttttttga ctcgtttgag accttagatg       420
     aaacagaagt cgaagatttc tctccattac atcatccaaa acaatatata taccaagatg       480
     taccagaaaa ttacgtatat ccaaattata catttcaaga atgttacaag tttacaagtc       540
     gtccaaccca gcattgtcca tcttcggaga cascttkcga agtacctcct gtgtatgatt       600
     atactccatt caacaataag tgtcattttc aacaacacag tagtgaacaa aatgataagt       660
     tttatcagtc aagccttatc gagaacagtt taccaaaaat caacataacc aataaatcaa       720
     atcacataca aactaaaaca ccagaatatc ctcaaaatca tcaggatatg tcaagagaat       780
     ttttatccgc agttcaaatg atagctcaaa acttccacaa gaaagaaata atctatccaa       840
     catttactgg taacgagtct gaagatccaa cagtgtttct gaagaatcta gaagaactgt       900
     ttcgtcaaga acgtgtcaat atcaaagaaa gaacaaacat tgctgcttca ctcttaaagg       960
     gcccagcaca acaatggtat caaccctaca aacatattgc cttatcctgg gaaatgttta      1020
     agtcacagtt catggatgca tttagcaaca ctgcagttat cgctcaccta acaacacaat      1080
     tgtacggaga aaaacagaaa actaacgagt cagccatcgt atttattaca aagaaacaag      1140
     gattattcta tagactgata cctcaagcat ccgaaataca ccttattaat attataatgg      1200
     aacaattagt gccagatatt cgatccagac taagaggact ccaatttaac actatacaaa      1260
     aactgttaca agttgttacg gcaatagaaa aggacctaac atatacacat cttaaccagc      1320
     aatatactac aaaggaatct tccatcgaag acctaaatag agccacacaa aataagttaa      1380
     ggcaagaaaa ccgtccacac agtgcctgta aatattgcgg agcttggcat ttccataaag      1440
     attgcagtcg aaacccttat aaccaaagat cacaagaaca aacagttacg agtaacagaa      1500
     gagatcacgt taatgggcat caaccaaatc aacaagaaca cagttcagcc aatcatacac      1560
     tacaggaaaa cggagaggga aggacagaag cctgtagctg gccgtcccta aacatgtttt      1620
     cagcaggcag tatatcgatc gccgatctct ctaaacaaac tccaaaaatt atgattaaat      1680
     ttaataatgt ttacataaat gcgttagccg atacgggagc ttcagttaat cttatatctt      1740
     ctcagttttt ttctgaattg cctaattcgt ataaacaaat agttaagatt ggttgtggta      1800
     cagtagaaat ggatattcat ggtatttttg agttagaata cacagtcctc gatgtaacat      1860
     taaattcaaa atttctgata gtcccaaatt tatctgaaga atgtatttta gggtatcctt      1920
     ggtttttaga acaacaagta gttctagata ctgttagatc ttgtatgtat tttggtaaaa      1980
     atattcgaag aactatttat tttgctaatg gaactcctcc ttctggaaca gttataaata      2040
     atatttcatt aaatcatctc gatgatctca ttaaagacca gtacgaagct attttggatg      2100
     aatattctta tctttttgat gaaagtctaa agagaccagt tacccgtaca attgaacatg      2160
     atattcgatt aaattctaat aaacctatca aaattaagcc atatccttta agtgaacaca      2220
     aaaagcgaat aatgaatgaa caaattcagg aaatgttatc cgcaggagta attgaatctt      2280
     ctatctctcc ttattcatca tcacctgtta ttatagagcg tcccgataaa aagcctaggt      2340
     tttgtgtcga ttatagggct ttaaatcaag taaccgagga tgaatttact aaacttccta      2400
     aagtgcatga aactttgaaa gagttaggag tggctaagat atttacttct cttgacttaa      2460
     gaagcgggta ttggcaggtc ggtctgtcag aacgctcaaa acctcttact gctttttcaa      2520
     cgcctgacgg aggacattat cagttcacgg taatgccctt tggacttaaa aatgccccta      2580
     ctagttttca aaaattaatg tccgaagagg ttttgaccgg ctttttacat aaattcgcat      2640
     tagtttatct ggacgatata attgtttatt cacgaaatca tgaagaacat ctgaaacatt      2700
     tacatcttat tttagagcgg cttagccttc atggtctcca aatctctcca aaaaaatgtc      2760
     atattgctaa aaataattta aattttcttg gtcatcatat aaaaggagat tgcaatactc      2820
     cacaagaata tcatttaaat gaaattttaa attatccgac cccaaaaaac aaaaaacagt      2880
     tacaatcttt cattgggaca ataaattggt taagggagta tgtgtttggg ttatccatat      2940
     taaccgctcc tcttgttgat cttttatgta aaaaagctaa gtggaagtgg actgaagtcg      3000
     aacaacgtgc atttgacgca acaaaaaatg cattttcaca acctctaaaa ttgcatcgtc      3060
     ctgatcctac attacctttc ttactacaga ctgatgctag tgacttagga atgggagctg      3120
     tactgtttca agagggcgaa ggggggaaaa agcaagtgat ctcatatagt agtgcgcgtt      3180
     taaatatgac cgagcgaaaa tatcatatta acgaaaagga gtgtttatgc attgtttggg      3240
     ctataaaaaa gtatagacag tttcttgagg acagaaaatt taaattaata accgacaaca      3300
     gagcgttgct ctggcttaat aaatatagag attctaaggc taaactgact cgttggtctc      3360
     ttttgttatc tgagttcaat tttgacatag aacattgtcc aggtaaatta aatttgtttc      3420
     ccgattttct atcgcgtaac gctagaaacg aacagacatc gttaacggaa tatgacatgt      3480
     cacgattgat tcctcctgaa aatagacagg accaaaaatt cgaaattaat aactcaaatt      3540
     taattcattt aaattattta gctcctattg atgactcatc tctctataaa aacatctgct      3600
     tagctcaaac taccgatccc gaattaagac aaaaggtttc tcgctggaat tttttacaaa      3660
     gcaatctttc ttgttcttca aatgatcgtc agttattgaa caattattta gttaaagatg      3720
     atttactttt taaacaggac acaggtcaag taatagttcc tacaaatgta attgaaagag      3780
     tgctttattt ttatcatgat tcgccatggg caggtcatcc aggtcgtgat gaaatgttta      3840
     acactattaa tcaatattat tattggtcag aaatgagaag tgacatttct aaatatacaa      3900
     aaaattgttt agtttgccta agtgtcaaag gtaggaactt acaacaatca gccacgatga      3960
     ctgctcatgt tgcgactaat ccgggagaaa tttttagtat cgacataatg ggaccttatc      4020
     cgaaaacggg ttcaggttgt cgttttttga ttactgtaga agatctcttt actcgctggg      4080
     ttgaagctaa accagtacct actgttcggt ctaaagacat aattcatttt ttgaataatg      4140
     aagtatgttg tagactaggt tatcctaaaa ccattatatc cgataacggt acacaattta      4200
     tgtcagaaaa ttggaaaaat ttctgtaaag aatatcatat taatcacgta acttcaccaa      4260
     tatatcatca acgtgccaac ccagttgagc gtagaaatca agaaatcaaa aaagttttaa      4320
     aagctcaatt atttaataaa aacacacaaa attgggacaa gagactgcct cgttgtttat      4380
     tttgtttaag gaaccgaaca aatgccgcaa caggactatc ccctgctatg agtctgctgg      4440
     gatattcgct tagtgcccca ggagaacggg atcatcccaa attcgcagta cctgttatca      4500
     atagaggaca catgcgagaa cagcgtttgc agaaggctag ggaaaaccaa gaagcatacc      4560
     aaggcaaata cacgaatggc atgtcacgcc atccaacgtt tcagtctgga gaccaagtgt      4620
     tggttcgatc catgaccaca aaacctggag aagcctttaa tcctgcctgg gaaggaccct      4680
     ttactatcat tagccccttg agtgaggctg tctactttgt atcaaggaat ggtgtagact      4740
     gtaaaattca tattgatgac attagaccga tacctcccga acgattactc agtttccaga      4800
     aaaatccaaa agttggatca tttacttctg tcagctcaga ggagttagag gaagagaaca      4860
     gggaatatgg aataagcccc cagtcaagta atcccgatat ggagcttgaa aacgtcatga      4920
     agtatcttga caggtcttcc attgaaattg aagtttgttc ggacaacagc tctgtatcat      4980
     catggaattc tgacgatagt aagcctacct gcatattacc tgatcaatac cctaaattga      5040
     ctactcgtac tcgtaaagca ccaatcttcc ttaacgatta tgtttgtaat taacagttta      5100
     gttataccaa cttgtactta tatcactaag ttactagtat aactttgttt ttagatatag      5160
     aaatatcttt attatttagt cttagataag attaattgaa tgttaatttc ataacattct      5220
     tgcagattga aaaactgtag gattgattat ttttatgtta caagtccgaa gacatgtaaa      5280
     taattacctt aattgtatta ttttctttga attctttctg aattttgttt tcttgtgtaa      5340
     agaaaagaaa aaaaaaattt agtaggccgc tggatatacg aaaagttaaa attttagtga      5400
     tatatgcata gactagattc ttgttttata gactgaacgg ttataaggaa cttgtttata      5460
     agtatttttt tttgaatttc tatgactaag tcttattgta aattgttttg attttatagt      5520
     tactatgttg ttaaaaggaa ttaatgttac taaatttttg ttcggaactt tagtaataaa      5580
     acgacatttt gaaaaaacca cgaaaattcc atcttagcag gggggg                     5626
//
ID   Gypsy-31_SiOr-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-323
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 399-399 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 323 BP; 118 A; 55 C; 68 G; 82 T; 0 other;
     tgttatcgat acctccctaa ttaaaataca aaaattggca accccggaag tggcaacaat        60
     gtgaaagaaa agattatgaa gaagagagtc gctcaccggc ttcgaaagac gtcgtcacgg       120
     gatggtcacg gtcacaaaaa gaataaggtg gaattttcga ggcgagcagg tgtccaatac       180
     aagcgtaatg gttttatttt ctaggtaaga tcctttttat tccctataaa attcaaacaa       240
     gtagattatc gatctcgatc ggtagagcta gccggtaata ggtattaatc aataatatta       300
     ataaaaaatc gagaacgata aca                                               323
//
ID   Gypsy-31_SpEx-I repbase;    DNA;    INV; 5214 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5214
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4100-4100 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..4312
FT                 /product="Gypsy-31_SpEx-I_1p"
FT                 /translation="MGRRSRTRSGSRVSHGRSRSRSRISKRRRHRNRLARS
FT                 PRSRSNSVLRGSLQTIITRLNALEDRSSFGMSSNIEVPPKKRDSTEQIVSA
FT                 INSLKYGGTRDFYVSNFDPNIHDVDAWFDEVDRAQILNKWNDAECLSRIGH
FT                 CLKGDAKSWLDEWVTTDRSWSNFKRDFKSLCVKKIDVANILYDVMSTNSDS
FT                 FVTYAEYVRRSLLRLQIVKGLSDELISAIVIRGVNEPNIKAAATNENLKPC
FT                 ELVNYFSTFVKPVENKNEKRANRGSIHSKEAVKPYFANRLTQKSTFKSKCF
FT                 SCGQTGHKQINCYSKQKPTSTNSDVTGTTTIGNDVKSVTKTICAYCKKTGH
FT                 HINDCFAKQRSDNRKSKVSFCFAPNLKNNKDVVVGVIQGIPVDVLIDSGAL
FT                 DVSLIASSVVNHLSCPIKTTYRELKGVGNTITRVYSYVTVAIEFKEITLEV
FT                 DLLVVPTESMNAPIIIGTDVLNREGVTYVRTKDYQRLTFSAVPAKVSSIQS
FT                 NEHPIQTSLLHDDKAKLIELLKEFSKVMITGTATSTVTTGSMHIRLNSDAP
FT                 VYYRPYKLSFNEKLRVREIIKDLLAKGIIRESESAYASPILLIKKKDGTDR
FT                 MCVDFRALNKITVKDRYPLPLIEDHIDRLGKGKYFTTLDMASGFHQIRLDD
FT                 ASIPLTGFVTPEGHYEYIKMPFGLANAPVVFQRIISNTLRSFINNGRVMVY
FT                 IDDVLLVSNSVDEGLQLLRDVLRTLSNAGFSLNMKKCSFLGTEIEYLGRVI
FT                 SDGKVRPSKSKITALINSPVPENVRQVRQFLGLAGYFRKYIENYALKTSCI
FT                 ARLTKKGVDFKWGKNEDQARTDIIKCLTSEPILSIFDPELNTEVHTDASSQ
FT                 GYGAVLLQMGKDGRKVVVAYYSQVTHGAEVRYHSYELETLAVVKALRHFRH
FT                 YLIGIEFKVITDCNALKATQNKKDLLPRVARWWVYLQDFTFVIVYRKGVLL
FT                 PHADYLSRNPIRIVNNVDKPRNWAQVAQSGDEETQKLISLLEEGQLDANRY
FT                 VQINDILYYRYSPVGEQSRLLCFIPKGHRLSLLRIFHDENCHIGVDKTIGL
FT                 ILNHFWFPGLHAFVKKYIAHCLACMASKRIPRAPLQPITSWKKPEVAFHTI
FT                 HVDVLGPLPESNGYKHILVLVDSFSKYCLIYPLYRQDHDELKKAFKNAISL
FT                 FGTPHLIVTDRGRMFESATFVKWVNDLGCSIHYITPEMHHANGQVERYVRT
FT                 LLNMLRVETYNKKSKWSEELWRLQLVLNVTKQKTTQASPLNLLIGIEGTTP
FT                 VIKTLVRDVALDISSSDRRSLRELDRQRAAERLKDNQIRQDEDVNKTRRAP
FT                 HVFQKDDLAFVIKYTQSKGKLDPGMRGPYRVTRVLENGRYELKLVAGAYGK
FT                 VTYAAAQFMVPWKGEWTPDECAAFFAREYLLLRLALLNN"
XX
SQ   Sequence 5214 BP; 1461 A; 1013 C; 1146 G; 1594 T; 0 other;
     tcagaagtgg gattcctacc tattacgcat ccacgtgtgt tcttaattat tgatttctgg        60
     cttattattt tgataattag tggcggttac tgtgttgtgt gtgataatgg ggagacgtag       120
     tcgtacacgt agtggatctc gcgtatctca cggtcgttcg cgttcgagga gtcgaatttc       180
     aaagcggcgg cgtcatcgta accgtctcgc gcgcagcccg cgatctcgga gtaattctgt       240
     gctacgtggc tcgttacaaa caataataac ccggttaaat gcgttagaag atagatcttc       300
     atttggtatg tcgtctaaca tcgaagtccc acctaaaaaa cgtgattcga cggaacaaat       360
     tgtgagcgcc atcaattctt tgaaatatgg cggaacacgc gacttttacg tgtctaactt       420
     cgacccgaat atccacgatg ttgatgcttg gttcgatgag gtagaccgag ctcaaatttt       480
     aaataagtgg aatgatgctg aatgtttgtc acgtatcggt cattgcctta agggtgacgc       540
     gaaatcttgg ttagacgaat gggttactac agatcggtcc tggagtaact ttaaacgtga       600
     ttttaaatcg ttgtgtgtga aaaagattga cgtagcgaac atactatacg acgtcatgag       660
     taccaattcc gatagttttg ttacgtatgc agagtatgta agacgatcct tattacgatt       720
     acagattgtt aaaggcttaa gtgacgaact aattagtgct attgttatac gtggggtcaa       780
     tgaacctaat ataaaagctg cagctacaaa tgagaatctg aagccgtgtg aattagttaa       840
     ctatttttct acttttgtaa aaccagtcga gaataaaaat gaaaagcgcg caaatcgagg       900
     ctctattcac tctaaagagg ctgtaaaacc atattttgcc aaccgcctta ctcaaaagtc       960
     tacgtttaaa tctaaatgtt tttcgtgtgg acaaaccggt cataaacaga ttaattgtta      1020
     ttctaaacaa aagcctacct cgactaatag tgacgtgacc ggaacaacta caatcggtaa      1080
     tgacgtaaaa tctgtaacta aaactatttg cgcatattgt aaaaagactg gacatcatat      1140
     taatgattgt tttgctaaac aacgttctga taacagaaaa agcaaagtta gtttttgttt      1200
     cgcacccaac ttgaaaaaca ataaagacgt tgtagtagga gtaattcaag gaattcccgt      1260
     tgatgttttg attgatagcg gtgctttaga tgtttctctt attgcatctt ctgtagtaaa      1320
     tcacttgtcg tgtcctataa aaaccacata tcgagaatta aaaggtgtag gaaatactat      1380
     tacgcgagtg tattcatacg ttaccgtagc catagagttt aaagaaatta cacttgaagt      1440
     cgatttattg gtcgtaccca ctgaaagtat gaatgcacca atcattatag gtacagacgt      1500
     tcttaatcgc gaaggagtaa cgtacgtgcg cactaaagat taccagcgat taacttttag      1560
     tgctgtccct gcgaaagtct cgtccataca atcgaatgag catcctatcc agacgtcact      1620
     tcttcacgac gataaggcta aacttattga attattaaaa gagttctcta aggttatgat      1680
     cactggtacc gctacctcaa ctgtgaccac cggtagcatg cacattcgtc taaatagtga      1740
     tgcgcctgtg tactataggc cgtacaagtt gtcttttaat gagaaattaa gggtccgcga      1800
     aataattaaa gacctattag ctaaaggaat aatccgtgaa tctgaatccg cgtacgcgag      1860
     tcctatactt ttaattaaaa agaaagacgg cactgatcgt atgtgtgttg attttcgcgc      1920
     cttaaataaa atcaccgtta aagacagata tcctttgcct ttgatagaag atcatataga      1980
     ccggttaggt aagggtaaat atttcacgac tcttgatatg gcctcggggt tccaccagat      2040
     tcgtcttgat gatgcttcga ttcccttgac aggctttgtt acacctgaag ggcattatga      2100
     atatatcaaa atgccctttg gtcttgctaa tgcacctgta gtcttccagc gtattattag      2160
     caatacttta cgttcgttca taaacaatgg ccgggtgatg gtgtatatcg atgatgtttt      2220
     gttggtcagt aatagcgttg atgaaggatt acaactattg cgtgatgttt tgcgtacgtt      2280
     gtccaatgct ggcttttcgt taaacatgaa aaaatgttca tttctaggta cggaaataga      2340
     gtatttaggt cgagtaataa gtgacggaaa agtacgacct tccaagtcta aaatcaccgc      2400
     cttgataaat tctcccgtac ccgaaaacgt tcgtcaggtc cgacaatttt taggattagc      2460
     ggggtacttt cgtaagtaca tagagaatta tgctctcaaa acatcgtgta ttgcacgttt      2520
     gacgaaaaaa ggcgtagatt tcaagtgggg taaaaacgaa gaccaagccc gtactgatat      2580
     catcaaatgt ttaacgagtg aacctattct ctctatcttt gatcctgagt taaacacaga      2640
     agtgcatact gatgctagca gtcaaggtta tggtgcggta ctactccaga tgggtaaaga      2700
     tggtcgcaaa gtagtagttg catattatag tcaggtcaca catggagcag aggtgcgata      2760
     tcattcttac gaattagaaa cgttggcggt agttaaggcg ctacgtcact ttcggcatta      2820
     tctcattggt atagaattca aagttattac agattgtaac gcactaaagg ccacccaaaa      2880
     taaaaaggac ctactgcctc gtgtagctag gtggtgggta tacctacaag atttcacgtt      2940
     cgtcattgtt tatagaaagg gtgtgttact accccatgcg gattacctta gtcgcaatcc      3000
     catccgtatc gtaaataacg ttgataaacc gcgaaattgg gcacaagtag cacaatcagg      3060
     tgatgaagaa acgcagaaat tgataagttt gttagaggaa gggcagttag atgctaatcg      3120
     gtacgttcaa atcaatgata ttctgtacta ccggtattcg ccggtaggag agcagtcgcg      3180
     gctactttgt tttataccga aaggacacag attgagctta cttagaatct ttcacgatga      3240
     aaattgtcat atcggtgtag ataaaactat tggattgatt ttaaatcact tttggttccc      3300
     tggcctccat gcttttgtga aaaagtacat cgcacattgt ttagcttgca tggctagtaa      3360
     gcggattcct cgagcaccat tacagcctat tacctcttgg aaaaagccgg aagttgcttt      3420
     tcataccatt catgtcgatg tcctaggtcc tctaccagaa tctaatggtt acaagcatat      3480
     ccttgttctt gttgactctt tttctaagta ctgccttatt tacccactgt acagacaaga      3540
     tcatgatgag ctaaagaaag cgtttaaaaa tgctatctcc ttgtttggca ctccacacct      3600
     tatagttacc gatcgtggtc gcatgtttga atccgcaacc tttgtgaaat gggttaacga      3660
     tttaggttgc tccattcact acattactcc tgagatgcat catgccaacg gtcaagtgga      3720
     gcgatatgta cgtactcttc tcaatatgtt acgtgttgaa acctataaca agaagagtaa      3780
     gtggtccgaa gagttgtggc gtttacaact tgtgctgaac gttacaaaac aaaaaactac      3840
     tcaagcgtct ccactcaacc tgctgatcgg cattgaaggc acgactcctg tgattaaaac      3900
     tttagtccgt gatgtcgctt tagatatctc cagcagtgat cgccgatctt tgcgagaatt      3960
     ggaccggcag agagcagctg aacgcctcaa ggataatcag atccgtcaag acgaggacgt      4020
     taacaaaaca cgccgagcac ctcacgtctt ccaaaaagac gaccttgctt ttgtcataaa      4080
     gtacacgcag tctaagggta aattagatcc tgggatgcgt ggaccttata gggtcacaag      4140
     ggtcttggag aacggccgat acgaattgaa gcttgttgct ggggcttacg gaaaggtgac      4200
     ttatgctgcg gcgcagttca tggtgccctg gaagggcgaa tggactcctg atgagtgtgc      4260
     tgctttcttt gcacgtgagt atttgctgtt gcgtctagcc ttgttgaata actagacctt      4320
     gtgtgatatg tctagccttg ttggataact agaccttgtg tgatatgtct agtcttgcct      4380
     gataactaga ccttgcttgt tatgtctagc gttgcttgaa aacctagacc ttgtgtgata      4440
     tgtctagcgt tcttgaaacc tagaccttgt gtgaatgtct agtcttgcct gataactaga      4500
     ccttgtgtgt tatgtctagc cttgcttgat atctagacct tgtgtgatat gtctagcgtt      4560
     gcttgaaaac ctagaccttg tgtgatatgt ctagtcttgc ctgataacta gaccttgtgt      4620
     gttatgtcta gccttgcttg atatctagac cttgtgtgtt atgtctagtg ttgcttgaaa      4680
     acctaaacct tgtgtattat gtctagtgtt gcttgaaaac ctagaccttg tgtgttatgt      4740
     ctggtcttgc ttgaaaacct agaccttgtg tgttatgtct ggtcttgctt gaaaacctag      4800
     accttgtgtg ttatgtctgg tcttgcttga aaacctagac cttgtgtgtt atgtctggtc      4860
     ttgcttgaaa acctagacct tgtgtgttat gtctagtctt acttgaagac taaaccttga      4920
     ttactatgcg tagtcttgtc taaggatgag acctgctctt gccttgcata tgcctgaacg      4980
     tgatagatcg tttataatct caaatggact atacaccatc tttcactctt cctgggaatg      5040
     gtaatctttc tattgaacat ctgcttactg ttttatgtat atcgggatgt gtttttatat      5100
     gcgtagatcc ttcggatgtc accacaacag aggtccagag cactccagcc tccgatgatg      5160
     aagaagttgg agcaaaaata cctgccgagg acgccagggt gtcaggagag gccg            5214
//
ID   Gypsy-31_SpEx-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-256
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4160-4160 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 256 BP; 79 A; 45 C; 44 G; 88 T; 0 other;
     tgtaaggaaa cgtcgtcggt ttgacgtttg taaaactgtc aaattcaatt gacagataag        60
     acaagcgaca cttccgccca cttccgcttg ggacagcatc gcgaaccggc gcatcactta       120
     ttcgtatcgt ataaaaactc ttttctttat tgttaaattg tgtgtagcca gaaatcaata       180
     acaacaaatt attgtgatta aatttagtaa cattaaattc attagttttc tgtaaaggtt       240
     gttttatttg tttaca                                                       256
//
ID   Gypsy-31_TrNi-I repbase;    DNA;    INV; 5222 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5222
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 234-234 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1113..4988
FT                 /product="Gypsy-31_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAQATSTLPNLEQFNCDGDPTSVGSRWEKWKRALEIY
FT                 LLAASIDTPAKKRATLLHLGGIALQDVYYNLPGAHAEEGEGIDVYAIALDK
FT                 FDSYFAPKQSRIYERYLFRLMKQEEGEQFEKFLLRLRNQAEKCQFQNKEEH
FT                 IIDQITEKCLLIDLRKKILEYGDAITLDEIISKANALEVVTRQLDQFKSFN
FT                 TINENKYNKAEINTIYNKKKYDKSIRKQESNTKCSRCGSSTHLSEDSKCPA
FT                 RDKRCSKCGYIGHFREHCRTRQKRYLPNNRRETVHKKPRQETKKETNKSEI
FT                 DYIFHLDEDETIKCNIGGVIVNMLIDSGSRCNVITDRTWQLLKDNSVKVSN
FT                 QIRKPNKTLISYGSKEPLNIMGSFEANISVGNNRGIKCTVYVIKNGTRDLL
FT                 GKETAILLGVLKIGLQINALSNQTPLKKEFPKFKGVTVQIPIDQAVKPVIQ
FT                 PYRRIPIPLEEKVARKLKELKDADIIEEVNGPSPWVSPMVPVLKEGQEEVR
FT                 ICLDMRRANEAIIRENHPLPTMNELLPNFCQAKYFSKLDIKNAFHQLEIHE
FT                 NCRYITTFSTSKGLYRYKRLMFGISCAPEMFQKILEKMLLGCDGTFNFIDD
FT                 IIVHGATEKEHDERLSKVLRVLKENDVLLNENKCIYKTQKIEFLGHELSAS
FT                 GIRPLEKYLTVIKTSRTPNTTEEIQSFLGLVNFVSKWIPNLATLTEPLREL
FT                 LRLGLGKSANIQKFWTPKQDEAFEALKKSLSNIQTLGYYNPSHKTQVVADA
FT                 SPVGLGAVLVQVGEDGPRVIAFGHKALTDCEKRYCQTEKEALALVWAVEHF
FT                 KMYLLGKDFELISDHKPLETIFGRSSKPCARIERWVLRLQAYRYKVIYRPG
FT                 KSNIADTISRLSKTTSSEPFDSENYVNQIVSYSRPTAVPLNEIKRCSSEDE
FT                 EILKVKNGIFNNDWHDSVNNFKIIKNELCFNEDILLRGTRIVVPHNLRSRV
FT                 LEAAHEGHPGIVSMKARLRTKVWWPRIDKDAERLVKTCQGCTLVSNPIPPH
FT                 PMKRRTLPDGPWMDVAMDFLGPLPSRDYLLILVDYYSRYKEIKVMRSITSL
FT                 DTIKVLKEIFSRLGYPATLTCDNGNQFTSEIFQNYCKECGISLFNTIPYWP
FT                 QMNGEVERQNRDVLKRLKISQAENKDWKDDIFNYLMMYNSTPHSITGKSPS
FT                 ELFYRRQFRDKIPAAQDVEYKTIDEEVRDRDLQMKEKGKEYGDLKRRATDS
FT                 HLEIGEKVLIKNVIKENKLTPNYNPTMHTVTGVKGGDICIRNDETGKEYRR
FT                 NVIHLKKVNDAWTVINQDCSNNNLEENDELT"
XX
SQ   Sequence 5222 BP; 1932 A; 863 C; 1005 G; 1421 T; 1 other;
     agtggcgacg aggacaaaag tgagtacaaa taattatatg caaaaaaaaa aaaaaaaaaa        60
     gaaaaaaaaw aagaataaag aacgaggaat aagtagacgg ttgtttattt ccaaccagtt       120
     gtgtgcatgt atcttggatt taaatatcga attagaggtt gtcaatgttt agaccaaaga       180
     aattaacatt caaataaata taataataac attaataaca tacttccata ccaagttagc       240
     aggtaaacaa tggtcacaaa cataacaaat acttatcata acccttcatt cctaatggcc       300
     atgcatcctg tgagatagaa ataaaatatt aaaataaggc cacgcaaagg taatataatg       360
     aataataccg acaaaaaaaa aaaagcatac gtcatgttgt gcacgcacgc cacttaatta       420
     tacccacatt ccattataga atcaaaacaa cataaagtgt agattaattg aaaaataccc       480
     actaaatccg aatagaaaat aattctactg gatacatttt atacagttta tagtgtcatt       540
     ttaaagtata cattcatgca tatgtaggta tttgccaatc ctatttgctt acatttgaaa       600
     ttttgtcgtt ttattgttaa agaatactta ttatagcttg aataataatt caattgacgg       660
     ttaagtttaa taccacttgg aatttctatt aattaaggat tatgtagagg aaacatattt       720
     gattattata ttaataacaa tttgttctaa gctttgatta ccttcttact ttagtaataa       780
     cagttaaaat taattagttc aatattttat catttgagta aggacaatca catcaaatag       840
     gtatttatcg atattaggcg tgcacgaatc atgttggaag ggttcacgta aaagccacgc       900
     aatttgtaaa ttacaaatgg ctatgcagat taattaagaa cctaccttat ggacatgtac       960
     tcgttaagta tcatcaataa gatgtaaata cgtccacgca ttaagaagtc gtaaaagtat      1020
     aatagggcta cgcaattact atattgttac tgatttccag taaagagcca cgcaaatata      1080
     ggaggcaaaa ttctattgca ggacgcccca aaatggctca ggcaacctcc acactgccca      1140
     acttagaaca atttaattgc gatggtgatc cgacatcggt tggttcacgt tgggagaaat      1200
     ggaagagggc acttgaaatc tacttactgg ctgctagtat cgacacgcct gcaaagaaaa      1260
     gagctactct cctccatctt ggggggatag ccctccaaga tgtttattat aacctaccag      1320
     gagctcatgc tgaagaaggg gaaggtatcg atgtctatgc tatagcgtta gataaatttg      1380
     acagttattt cgcaccgaag caaagtcgga tatacgagag gtatcttttc cgacttatga      1440
     aacaggagga aggagaacaa tttgaaaaat tcttattaag gttgagaaat caagctgaaa      1500
     aatgtcaatt ccagaataaa gaagaacaca ttatagacca aattacagaa aaatgtctct      1560
     taatcgattt aagaaagaaa attttagaat atggtgatgc aattacctta gacgaaatca      1620
     ttagtaaagc aaatgcatta gaagttgtaa ctagacaatt agaccaattt aaaagtttta      1680
     atacaattaa tgagaacaaa tacaacaagg ctgaaataaa tacaatctac aacaagaaaa      1740
     aatacgacaa atcaattcga aaacaagaat caaacacaaa atgtagcaga tgtggaagct      1800
     ccactcactt atctgaagat agtaaatgcc ctgcaagaga caaacggtgt tcgaagtgtg      1860
     gctacattgg tcatttcagg gaacattgta ggactagaca gaaacgatat cttccaaaca      1920
     ataggagaga gactgtacat aaaaaaccaa gacaagaaac aaaaaaggaa accaacaaat      1980
     cagaaatcga ctatattttc cacctagatg aagatgaaac tataaagtgc aatattgggg      2040
     gagttattgt gaatatgttg atagattcag gaagtagatg caacgttata actgatagaa      2100
     cttggcaact tctaaaagac aatagcgtaa aagtttccaa ccaaatacgc aaacctaata      2160
     aaacactcat ttcctatggt agtaaggaac ctttaaatat tatgggttct tttgaggcaa      2220
     atatttcagt cgggaacaat aggggcataa aatgtactgt ttatgtaatt aaaaacggta      2280
     cacgtgatct actaggcaaa gaaactgcga ttttattagg cgtgcttaaa attggactcc      2340
     aaattaacgc actaagcaat cagacaccat tgaagaaaga gtttccaaaa tttaagggtg      2400
     taactgttca gattccaata gaccaagcag ttaaaccagt catccaaccg tatcggagaa      2460
     ttcccattcc tctagaagaa aaggttgcca ggaaactaaa ggaactaaag gatgcggata      2520
     tcatcgagga agtaaatgga ccctcaccgt gggtatcgcc aatggtgcct gttcttaaag      2580
     aaggacaaga ggaggtacgt atctgcttgg atatgaggag ggctaacgaa gctattataa      2640
     gagaaaacca tcctcttcca acaatgaatg aattgctacc caatttctgt caagctaaat      2700
     acttttccaa acttgacata aaaaatgcct tccatcaact tgagattcat gaaaattgta      2760
     gatacattac tacctttagc acgagtaaag gactgtatag atataaaagg ttaatgtttg      2820
     gaatatcttg tgcaccggag atgttccaaa aaattctaga aaagatgttg ctgggttgcg      2880
     atggtacatt taactttatt gatgatatta tcgtacatgg tgccacagaa aaggagcacg      2940
     acgaaaggtt gagtaaggtg ttgcgagtct taaaggaaaa tgacgtccta ctaaatgaaa      3000
     acaaatgtat ttataaaaca caaaaaattg agtttctcgg tcacgaactt tcggctagtg      3060
     gaataagacc ccttgaaaaa tatttaacag taattaaaac cagtagaaca cctaacacta      3120
     ctgaagaaat ccaaagtttt ctgggtttag ttaattttgt tagtaaatgg attcccaatt      3180
     tagctaccct tactgaacct ttgcgggaac tgttacggtt aggcctgggg aagtcggcaa      3240
     atatccaaaa gttctggaca cccaaacagg atgaggcatt tgaagctttg aagaaaagct      3300
     tatccaacat ccaaacatta ggctattaca atccttcgca taaaacccaa gttgtcgctg      3360
     atgcttctcc tgtaggatta ggtgctgtat tagttcaggt aggtgaagat ggtcctcgtg      3420
     tgattgcttt tggtcataag gctttaactg attgcgaaaa gagatattgc caaacagaaa      3480
     aagaggctct agcgctcgtc tgggcagtgg agcactttaa aatgtacctt ttaggcaaag      3540
     attttgagct aataagcgat cacaaaccat tggagaccat tttcggacga tcttctaagc      3600
     cgtgtgctag gatagaacgg tgggtactta gattacaggc ttacaggtat aaagtcattt      3660
     atcgtccagg caaatccaat atagctgaca caatttccag gctcagcaaa actacctcgt      3720
     cagaaccatt cgactctgaa aattatgtca atcaaatagt aagttacagt agacctaccg      3780
     cggttccttt gaatgaaatt aaaagatgtt ctagtgaaga cgaggaaatc ttaaaagtta      3840
     aaaatggtat ttttaataat gactggcacg attccgttaa caattttaaa atcataaaaa      3900
     acgaactttg ttttaatgaa gatatcctac ttcggggaac caggatagtt gtaccccata      3960
     atctgcgttc tcgagtacta gaagcggctc acgaaggcca tccgggtata gtatcgatga      4020
     aggctcgcct tagaacaaag gtgtggtggc ctaggattga taaagatgct gaacgtctgg      4080
     tcaaaacttg ccaaggttgt acactggtat ctaatcctat tccaccacat ccgatgaaaa      4140
     gacgaacact tcccgatgga ccttggatgg atgtagcaat ggacttcttg gggcccctcc      4200
     ctagtcgcga ttatctacta atactggttg attactatag tagatataag gaaattaaag      4260
     taatgcgtag tatcacctct ctagacacaa taaaggtttt gaaagaaata ttttctaggc      4320
     taggctatcc agcaactttg acgtgtgata atggaaacca gttcaccagc gaaattttcc      4380
     aaaactattg caaggagtgc ggaatcagtt tatttaatac aatcccttat tggccccaaa      4440
     tgaacgggga agtggagagg caaaatcgcg acgttttaaa acggctcaaa atttcacaag      4500
     cggaaaataa ggattggaaa gatgacatat ttaattatct gatgatgtat aatagtaccc      4560
     ctcattctat tacaggcaaa tctccttcag aattatttta caggaggcag tttagagata      4620
     agatcccggc agcacaagat gtggaatata aaacaataga cgaagaagtt agagacagag      4680
     atttacaaat gaaagaaaaa gggaaagaat acggagacct caaacggaga gcaacagata      4740
     gccatttgga aataggagag aaagtattga ttaaaaatgt aatcaaagaa aataagttga      4800
     cccctaatta taatcctacc atgcataccg taacgggggt gaaaggtggc gatatttgta      4860
     ttcggaatga tgaaaccggg aaagagtacc gccgaaacgt aatccactta aagaaagtga      4920
     acgacgcatg gaccgtgatt aatcaggatt gcagtaataa taatttagaa gaaaatgatg      4980
     aattaacgta aatccttaga tgattgttgt attattaaat tgttatatgc tgttgctaag      5040
     tgcgatttta agattgtgca atttaagtaa aatcaaagtt ttgttacatt gtgcagcaaa      5100
     tttgtaacac atagtaccta atatttaaaa tacttgatta cttaaccctc aaagttgata      5160
     aaacattaaa atagtaatta tgaatcttga aacatttgaa atcattaaaa ataaagaagg      5220
     ga                                                                     5222
//
ID   Gypsy-31_TrNi-LTR repbase;    DNA;    INV; 135 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-135
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 188-188 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 135 BP; 32 A; 38 C; 30 G; 35 T; 0 other;
     tgtagtgtat gtgcctacgc atcagcgcgt cagtcgctta caagccgtca gtgcatgcac        60
     acgtgtctga gctacgcata ccctacaccc gcctaagtac gacaaatagt gttttattgc       120
     ccctgggata ctata                                                        135
//
ID   Gypsy-31_TrVa-I repbase;    DNA;    INV; 8748 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8748
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 276-276 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           892..2463
FT                 /product="Gypsy-31_TrVa-I_1p"
FT                 /translation="MDFEPSMWNVFWSHLDGLSWNFSTNNLLIEALSFFCS
FT                 SLHNQRITATHHQRIIYRRVFTSQVKSLYYQNSFFFFLLILFSVSYSLCLT
FT                 SVTYSIMSHQQHYNLRSAPFRIPSAHPPPQEVAINVENHHRQEIVAIPQNH
FT                 SPTGIRSPIEDRTPMRHLYPNVHMMHSRAPQSLENPIAIGTPNNDFHRSPN
FT                 NDFHRSPNNDFQRSPRSFSSGAEPQVSVAAACVEGSQSSPNVMNTVLNELK
FT                 NMQLMINDRISNLESKIPDLVKSELSGQNGPRERSDSMVSASVSTNKGKRD
FT                 RLYGSVNFRDIAAFNGKLEPVHPKIFINSLRLYLQVNPCSDEIIINEISRL
FT                 LTGDAQSWYQVYGDSFSTFDSFCAGFLRYFWGEALQNNIRASIFMPHRFVS
FT                 GGSLASYFLENVKKVKYLDQPLPESVILSAIIAHFPEQVRWTLSESQADTI
FT                 DKVLFRLQSLDNLKFQYQVSPFRSNAPIQNSNFSRNNNNSRPQNQRVNQLA
FT                 IEYVPDVSIPPPQIGESPSESNLTESLN"
FT   CDS           2349..7013
FT                 /product="Gypsy-31_TrVa-I_2p"
FT                 /note="retropepsin, SGNH hydrolase, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="TSKSTGQSACYRVCARCIDSTSSNWRVSLREQLDRVF
FT                 KLENCWATVNSVVPAVNTQIQMDKRIIEKLQSKAHLTFTFVKIQVTSLGDN
FT                 SFNFVILAIVPNLFQRNFKNIIHGNTIFNFEILNFFVSINMFNLLKFVQSL
FT                 DMTKFSYLLLFLSSSLIIHDRDFLSNFVNPVPANSKICENMAKVLMHNISL
FT                 PLILQLSQKIQIFLCELIVRNDKNLDEFIKTVNQRLVVGLKAQHTVKMIDI
FT                 NQHLLSLEQFDENELPTSSFLKVLSDVVRQVVENQDRCKTVDCHRISTIQQ
FT                 NPDHFLLSEKDQSSTRVIKQKSPYISAIIENHPFELLVDTGSEITLCSQNF
FT                 FESLEKITNFKFPKLPVTGLTIRGVTGVKSKRVQFQIFINFVISGVSFPSP
FT                 VLVVPEIQVPLIVGIDFLTQFGAFIDCQKRTVTLLNGQISVPWIYREAVNI
FT                 NQIRWEINPEKPKVLILSDSHGRGLSSLIIPKLLNVNIEVKVKPGAKFNDV
FT                 IADLESEKDMLFENDILILIGGTNNIDFLKSQAFLNSEFKVDVLRQLKCNI
FT                 IIFEIFERFDVSSINPIISDINHHLRESLAEINCQFVKTDELFCREDFSSH
FT                 GLHLNHAGKQKLSKVIIDKVNQIITFEYSDVNLSCNWHLENTELLEMEASA
FT                 NVVTSTTFGEAEIMEKLDSLQLSTDQKTQLRDLLLEFKDVFSDIPGKCKVY
FT                 KASFRLTDLKPFVKRSYPVPFAKKDMVRREIRRMLDLEIIEISYSAYSSPI
FT                 VPVPKKDGNCRLCLDARTLNSKLIADAEKPEHIDTLLYKFRKPAFISTLDC
FT                 VSSFWQIELEEESRDCTSFTFEGVNYRFTRLPFGTKVSMQHFNKGMNTSLG
FT                 PELYDFLTKYVDDLRIVSETFEDHLKHLRITLQKLRDAGFTLKFTKCFFIQ
FT                 AFVDFLGYILSVNGIQMDPDKVRAIRDFPVPKSLKDLQSFVGLVNFYRKFF
FT                 INHSNLIEPLLYLFKKGAVWEWTEKEQRAFEKIKNNFCNDVILSYPDFTKE
FT                 FYINTDASFSAIAGELFQYDEEGYRRPITYFSRTLAPSEKNYTITELELLA
FT                 IVSSCHKFRQYILGFPVVVLTDHSALTFLNRCVLSSGRLTRWALYLQEFDL
FT                 TIKHIKGQENTALDVLSRFPPELHSLPPNNTEISVNKVNYLTELKDLFRNL
FT                 AQLQREDLKLGQIYTKVKNRVSFEGEKFYLIQDEHLFTNSFSDNNFKLCVP
FT                 QSLETSVIKTAHEKIGHAGINKTYNYLKNFVTFPKLEVKIRSFVRACLACQ
FT                 KCKVPNKTFHAPLEPVLASKPLELLSVDLYGPLPKAKGNFCHIFVVLDIYS
FT                 KYVKLYPLRNATGVLVTRKFINNYPNDVGTPVMVLSDRGPAFRSKFWDQNL
FT                 KSLGIKPTHTSVYHPASNPVERYMRTIGDMCRLYCNENHRSWIDYLQFFED
FT                 CLNHSTNESTGVTPIEIMKGQNPDNFLTNLINFPDSSNKVNVKLKLSILEK
FT                 NLKRKAETRKAVYDQKHRLHHFSIGDKVLVKTNFLSNSQYGEIKKFFCLFE
FT                 GPYEIIETAGKNAFKLKNIESGDILGVYNAALLKPLITI"
XX
SQ   Sequence 8748 BP; 2521 A; 1716 C; 1536 G; 2975 T; 0 other;
     acatggcgcc ctcctcgttg gcaatcgatg attagtacaa tcaatcatcg gtataaccca        60
     atttaactcc ccgagataag tcaagtttta aaagtgtctt tttattcgtg tactcgtatt       120
     tttgtgttgt aagtgttatt catcgtgtca tttcgtgttt ttctttattt cgcgtgtttc       180
     ttaatttcgt atcgtttcgc gttattgttt cgagctatct cgtgtttcgt gttttttcaa       240
     gtgttccgtt ctttaagtgt tctgcagtgt attttatgtt cttacactta attcatgttt       300
     tttttttatg ttctcgtatt tttctcgtgt tttcgtgttt ttaaattttc aggtcgaaac       360
     gtatttttcg tattttcgag ctctgacttt gttcgtgttt ctttttccgt gctctttttc       420
     gtgttttttt gtgttttcgt tttcgtgttt ttgttgagtg tttagtgagg gagtgcacgc       480
     ccttaccacc tcaacttttt cttgtttaat acgttatttt agcggacaat ttattcattg       540
     ttttttatag tttgactacc ctcagttccg tgaggccaag tcttattatc aattaaatga       600
     aaatatagaa tttctcaaat aaagccgttc ggttattttc tgtgaaatta accgcatatt       660
     attttcaatg tcgtgatttt tctaaaagtt tctaccactt tatcagttaa tttaatttta       720
     aataaattag cccgtgcttt cgctgagtga atccagccga tgttccagaa ccagagtgtg       780
     cttagtatga tttacaattc caaaatcaca cattctgcaa cgtgggagtt ataataacaa       840
     tcgtgatttc aacatcctgg tctttattaa cgtccagctc tcctcacttc tatggatttt       900
     gaaccatcaa tgtggaacgt cttttggagc catctcgacg gactgtcatg gaatttctca       960
     acaaacaatc ttctcatcga agcgctctct tttttctgtt ccagccttca caatcagagg      1020
     atcaccgcta ctcatcacca aaggattatt tatcgtcgag tatttactag tcaagtaaaa      1080
     agtttatatt atcaaaattc tttttttttt ttcttgttaa tcttattttc cgtcagttac      1140
     tcgctttgtc taaccagtgt cacatatagc atcatgagtc atcaacagca ctataactta      1200
     aggtcagcac catttagaat tccctctgcc cacccacccc ctcaagaggt ggctattaat      1260
     gttgaaaatc atcatcgcca agaaatagtg gctattccgc aaaaccattc accgaccgga      1320
     atcagatcgc caattgagga tcgcactcct atgcgtcatt tgtaccccaa tgtccacatg      1380
     atgcatagta gagcaccgca aagtctcgaa aacccaattg ctatcggaac tccgaataat      1440
     gatttccatc gatctccgaa taatgatttc catcgatctc cgaataacga tttccaacga      1500
     tctccacggt ctttttccag cggagccgag ccccaggttt ccgttgccgc tgcttgtgtc      1560
     gagggttcac agtcctcacc taacgtcatg aataccgtct taaacgagtt aaaaaatatg      1620
     caactaatga tcaatgaccg aatctcgaat ctcgagagta aaattcctga cctggtcaag      1680
     tctgaacttt ccggacaaaa tggacctcgg gagagaagtg actccatggt aagtgcctcg      1740
     gtctcgacta acaaaggtaa aagagacaga ctttatggat ctgtgaactt tcgagatata      1800
     gcagcattca acggaaagtt ggagccggtg catccaaaaa ttttcataaa tagccttcgt      1860
     ctatatttac aggtgaatcc atgttccgac gaaattatta tcaacgaaat ttctaggttg      1920
     ttaacaggtg atgctcaatc gtggtatcaa gtgtacgggg actcgttcag tacttttgat      1980
     agtttttgcg caggattttt aagatacttt tggggggaag ctctccaaaa taatattcgg      2040
     gcatcgattt tcatgcctca tcggtttgtt tccggaggaa gcctcgccag ttatttcctt      2100
     gaaaacgtta aaaaggtcaa atatttggac caacctctgc cggaatccgt aattttatca      2160
     gcaattatcg cccattttcc agagcaagtt cgctggactc tctctgagtc acaagctgac      2220
     actatcgata aagtgttatt ccgactccaa tcactagata atttgaaatt tcagtatcaa      2280
     gtctcgccgt ttagaagtaa cgccccgatc caaaattcga acttttcccg aaataacaat      2340
     aattctagac ctcaaaatca acgggtcaat cagcttgcta tcgagtatgt gcccgatgta      2400
     tcgattccac ctcctcaaat tggcgagtct ccctccgaga gcaacttgac cgagtcttta      2460
     aactagaaaa ctgctgggct acagttaatt cagtagttcc agcagttaac acccagattc      2520
     aaatggacaa gagaataatt gaaaaattgc agtctaaagc acacctaacc tttactttcg      2580
     tgaaaattca ggttacatcg ctgggagata attcattcaa ttttgttatt ttagccatcg      2640
     ttcccaattt attccagcgc aattttaaaa atattatcca tggcaatacc attttcaact      2700
     tcgaaatcct aaatttcttt gtatcaatca acatgttcaa tttgttaaag tttgttcaat      2760
     ctttagatat gaccaaattc agttatttac ttttatttct atcatccagc ttaattattc      2820
     atgatcggga ttttttgagt aactttgtca atccagtgcc agcgaattca aaaatatgtg      2880
     aaaatatggc caaagttctt atgcacaata tttcattgcc tcttattctt caactttctc      2940
     aaaaaattca gatattttta tgtgaactca ttgtgagaaa tgataaaaac ctggatgaat      3000
     ttattaaaac agtcaatcag cggctagtcg ttggtctaaa agctcagcac actgtcaaaa      3060
     tgatcgacat aaatcagcac ttattatcct tagaacagtt tgatgaaaat gaactcccca      3120
     cctcttcttt tctgaaagtg ttgagtgatg tcgtacggca ggtggttgag aatcaagacc      3180
     ggtgcaagac cgttgattgt caccgaatta gcaccattca acagaatcca gatcattttt      3240
     tgctatcaga aaaggatcaa tcttcaactc gtgttattaa gcagaaatct ccttacattt      3300
     ctgccattat tgaaaatcat ccatttgaac tgttagttga cactggcagt gagataacgc      3360
     tgtgtagtca aaatttcttc gaaagtttag aaaagattac aaacttcaag ttcccaaaat      3420
     taccggtgac tggtttgacc attcgtggag tcactggtgt taaatctaaa agggttcagt      3480
     ttcaaatttt catcaacttt gtaatctctg gcgtgagttt tccgtcaccc gttttggtcg      3540
     tcccagaaat tcaagtccca ttaattgtcg gcatagattt tctaactcaa tttggagcgt      3600
     ttattgactg tcaaaagcgc acagtgaccc tactgaatgg ccaaatcagt gtaccgtgga      3660
     tttacagaga ggcagtcaac attaatcaaa tccgatggga aatcaatcca gaaaagccca      3720
     aagttttgat actctctgac agtcatggta gaggattaag ctcattaata attcctaagc      3780
     ttcttaatgt gaatattgag gttaaagtca aacctggtgc taaatttaac gatgtcatcg      3840
     ctgatctaga atctgaaaag gatatgttat tcgaaaacga catcttaatt ctcataggag      3900
     gtaccaataa catcgacttt ctgaaatcac aagcatttct taattcagag ttcaaagtcg      3960
     atgttttaag acaattaaag tgtaatatta ttatttttga aatttttgaa cgcttcgacg      4020
     tatcatccat taatccaata atttcagaca taaatcacca tttgagagaa agcttagcgg      4080
     agattaactg tcaatttgta aaaactgacg agttattttg ccgcgaagac ttttcctcgc      4140
     atggtcttca tttaaatcac gcaggtaaac agaaattatc caaagttatt atcgataagg      4200
     tcaatcagat aatcacattc gaatattccg atgtgaactt gagttgtaac tggcaccttg      4260
     agaatactga attgcttgag atggaagctt cagcaaacgt tgttacatcg acaacttttg      4320
     gtgaagccga aataatggaa aaattagatt cattgcaact ttcaactgat caaaagactc      4380
     agttaagaga cttactttta gagttcaaag atgttttttc agatataccc ggcaagtgta      4440
     aagtttataa ggcgagcttt cgattaactg acttaaaacc tttcgtaaaa cgctcgtatc      4500
     ccgtgccttt tgcaaaaaag gacatggtac gaagagagat ccgcagaatg ctagacttag      4560
     agataataga gataagctac agtgcttatt cgagtcctat tgtgccggtt ccgaaaaaag      4620
     atggcaactg tcgtttatgc ctggacgcca ggacattgaa ttctaaactc atagcggacg      4680
     ccgagaaacc cgaacatatt gacaccttac tgtataaatt ccgaaagcct gcattcattt      4740
     cgacattgga ttgtgtatcg agcttttggc aaattgaact tgaggaagaa tccagagatt      4800
     gcaccagctt cacttttgag ggtgtcaatt accgattcac tcgacttcca tttggaacaa      4860
     aagtatcgat gcaacacttc aataaaggaa tgaatacatc tttgggccct gagctttatg      4920
     atttcttaac caaatatgta gacgatctca gaatcgtgtc ggaaactttt gaagaccacc      4980
     ttaagcacct gcgaatcact cttcaaaaac tcagagatgc tggattcact ttaaagttca      5040
     caaaatgctt tttcatccaa gcgtttgtgg actttttagg ctacatctta tcagtaaatg      5100
     gaatccagat ggatccagat aaagttcgtg caatccgtga ttttccagtg cccaagtctc      5160
     taaaagacct acaaagtttt gtcggcttag ttaattttta tcggaagttc tttatcaatc      5220
     actccaactt aattgagcct ttactctatc tctttaaaaa gggagcggtt tgggagtgga      5280
     ctgagaaaga gcaacgagct ttcgagaaaa tcaagaacaa tttctgtaat gacgtcattc      5340
     taagttatcc ggacttcaca aaagaatttt acataaacac tgatgcatcg tttagtgcta      5400
     tagccggtga gctttttcag tatgacgaag agggttacag gagaccgatc acctatttca      5460
     gtcggacgct ggccccgtcc gaaaagaact acactataac tgagctcgag cttttggcga      5520
     tcgtgtcaag ttgtcacaaa tttcgccaat acattttagg cttcccggtt gtcgtactaa      5580
     ccgatcacag tgcactaacg tttttaaata gatgcgtcct ttcatcagga agactcactc      5640
     ggtgggctct gtatttgcag gaattcgatt tgaccataaa acacatcaaa ggtcaagaaa      5700
     atacagcgct ggatgttctt tctcggttcc ctcccgaact ccactccctt ccaccgaata      5760
     acaccgaaat cagtgtaaat aaagtaaatt atcttacaga attgaaagac ctgtttcgaa      5820
     atttggccca gttacaacga gaggacttaa aattaggtca aatttatacc aaagtgaaaa      5880
     atcgcgtttc ttttgagggt gaaaagtttt atttgataca ggacgaacat ttatttacaa      5940
     attcatttag tgacaacaat tttaaacttt gtgtacctca gtctctagaa acctctgtta      6000
     ttaaaaccgc tcatgaaaag ataggacatg ctggcattaa taaaacatat aattatttga      6060
     aaaattttgt aacgtttcca aaattagagg taaaaatcag aagctttgta cgagcttgtt      6120
     tagcatgtca aaagtgcaaa gtaccaaata aaacttttca cgctccactt gaaccggttt      6180
     tggcttcaaa accccttgag cttttatcgg ttgatttgta tggacctctt ccgaaggcca      6240
     aaggaaactt ttgtcatatt ttcgttgtac ttgacattta ttctaaatac gtaaaacttt      6300
     atccattgag aaatgcaacc ggtgttttgg ttacccgaaa attcatcaat aactacccta      6360
     atgacgtcgg tacacctgtt atggttctga gtgatcgtgg accagcattc cgatcaaaat      6420
     tctgggatca aaatctgaaa agcctgggaa taaagcctac tcatacttca gtatatcacc      6480
     cggcttcaaa tccagtcgag cgatatatgc gtactattgg agatatgtgt agactttatt      6540
     gcaacgaaaa ccaccgatca tggattgatt acctgcaatt ttttgaagat tgtctgaacc      6600
     attccaccaa tgagtccacc ggtgtaacac ccatcgaaat tatgaaagga caaaatccag      6660
     acaattttct aaccaatctc attaattttc ctgactcaag taataaagtt aatgttaaac      6720
     ttaaactgtc aattttagag aaaaatttaa aaagaaaagc agaaactaga aaagcagttt      6780
     atgaccaaaa gcatcgcctg catcatttct ccatcggtga caaagttttg gtgaaaacga      6840
     actttttatc aaacagccag tacggagaga taaagaagtt cttttgtctt tttgagggtc      6900
     catatgagat catcgaaaca gcagggaaaa atgcattcaa actgaaaaat atcgaaagcg      6960
     gagatattct aggtgtatat aatgcggcgc tattaaagcc gttaatcaca atttgatctg      7020
     tataacttcg attttttttt tttttttttt ttttattttt tgagaatgtg gggtcagtga      7080
     accccaattc ttagtcaaat tgttgataga tgtaagttct tataattaag ccaaacataa      7140
     gttaagtttc gacaactcgt tgatttttca tttttcattt tatcactttt tatttttttt      7200
     cttgttttac atgtttgtgt aacctaagtt aagtttcagc aaatcgttga tttttatatt      7260
     tttttttctc tcacttttcg tttattattt ttgttgtgta aatctaagtt aagtttcaac      7320
     aaatcgttga ttttattttt ttcactttct catttaccaa ttttatttct tttcttgctt      7380
     taaaattttg tgtgacctaa attaagtttc aacaaatcgt tgattttatt ttcatttctc      7440
     acttttcctt tttttttttt ttttcttctt tttttttttt ttcctcgttt attgttttaa      7500
     tttgtatata tttttgactt ttgaaaactt gacttatcta cattaattcc gatttcattt      7560
     cctaacttaa atagtttatt gtttgagcga tttgtgtgtt catgtaaagc ttatgagtta      7620
     taggaccaaa aagcttcgca ggagcgcata catcgctcga agcttgcatt ttactttgaa      7680
     ttttatttta ttgcgtttat catgaaagtt cgtcctgcca tagcatctaa cagttagtaa      7740
     gaggtaactg tgtggaataa acgcctccta gcgggcatag ttgtgtgttt ctccctgagg      7800
     ggtttaacgt cactaggagt atcctttatt ttttttttca ttttattcat attttttttt      7860
     tttaaactga aatttgtccc cctcccctca atttttctcc ttgatgtgat ggctgatatc      7920
     aaggaaaccc tgcggaaaag gagcagactg ggtcatccgc agttttatgt cgtttacagg      7980
     ccatttttct agcctgtaag ccaatgtatg tgtatgtatt tgtgtttgtt tacgatgtat      8040
     gtcgtgccga aagtcacgct tcttcttctt ctttcgttct ttctcagtgt cactttcggt      8100
     gccaatgtat gattcccgtg accatctcga taggatgaaa atgttttggt tacacccaag      8160
     cctttctttt attttagtca agccccaatt ttttttaacc acagctggta cttttggtgg      8220
     aaacactatt ttgagttaag tgatacttgt ttccgggaat ttcacgtggt atgggactca      8280
     gtaacttttt tgatggcaag tatcatgctc accttgattg tacccccaag cgattaaaag      8340
     tacagccata aggtgggtct cttatggttt cagccccctt cccccctacg gacaaccgct      8400
     cgaccccgga gcgaggccca gcaaagtaaa atgcaataac tatgaaacct taaataaaat      8460
     aatgagcaag caaacactat cccaccccag gaatatttta tgtaatatta tgtattttgt      8520
     tttgttcttt gtcatatgtt tttttttttg cttatttcta ctaatctctc actggatttt      8580
     tttttttagc tttaattctt aagttctttt agaataaaac ttaaggcagt acttgattcc      8640
     ttcaacggcc cgagcacttt tacaaattac catcgttgtt attttttgag aatatcagct      8700
     tctcagttga atgccaaggc attcagctga taagctggtt ggggtagc                   8748
//
ID   Gypsy-31_TrVa-LTR repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-31_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-525
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 335-335 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 525 BP; 140 A; 115 C; 143 G; 127 T; 0 other;
     tgtagcatgg gagtatttcc catgtggtgt ccagaaccgt cccttcgctc attccatcca        60
     cttgcgcaac aggcagagag gatcgaggca tagcaactct tgtcagtgcg ttcgcgggtg       120
     ggagaaagcg ggggaaaaaa gagaaaacgt aacggggatc gacctttgtt tcaagccagg       180
     agtcgaaggc cagaccctgg gagaaatcag ggctcgaact gcgttgcata ttttaagccg       240
     aaaggcagtc ggatagtttc ttgcacagcg taaagacgga gtctctttct ccaaaataat       300
     gtgagtatct tttgggggct agtcatgtac tttgtacatg gctagctttc cataaagtta       360
     attcgtgtgc ttcgggtcgg ggagggataa aagtggttcc ttgatcatat atccaaaacc       420
     cgtgttctat ttattccaaa cccccgtagc attaaatgaa agtaatctga cagatcgcgt       480
     tcctaatggg gggggcgagc gacccccaaa aaggaccacg cgaca                       525
//
ID   Gypsy-32-I_NVi repbase;    DNA;    INV; 8549 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-32-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8549
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 1000-1000 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3220..5361
FT                 /product="Gypsy-32-I_NVi_1p"
FT                 /translation="EAGKLKHPAVKETDSRLPYTARLHTRDILSTDLFLID
FT                 TGADISVIPKPTNWQGKPIDLKLYAVNGSTINVYGTVLRELDVGLPYRLTW
FT                 NFTIADVPHSIIGADLLTHYHLLPDLKNKRLVDGNLFTHAPAFIKSVRPMQ
FT                 ISFLAPSHKYANIINNFPKVFGPDQFRSTKKRGVFHHILTTGPPSAQRARR
FT                 LKPEKLKIAKAEFRRMVEQGICRPSNSNWASPLQMVPKKNNKVRPCGDYRK
FT                 LNIDTVPDRYPVPHMHDCMAFLHGKNIFSALDLRQAYHQIPVAPEDIPKTA
FT                 VITPFGLYEFPVMTFGLRNASQTFQRYINSALGDLDFVFVYLDDILIASTS
FT                 EEEHKKHLETVLSRLNEHELQVNLEKCSLGVSELIFLGHLITPNGFKPNPE
FT                 KVKAINDFPLPKTIEELRRFLGLVNSYRRLLAHSAETQRHLNDFLKGAKKK
FT                 DKRPVPWTKEAEAAFQKCKDDLVNLSFTAFPSENAELRLIPDASDTAMGAA
FT                 LEQRSGNSWQPLAFFSQKFSPAQMKYATYDRELTAIYEAIRYFHHYLEGVE
FT                 FKTYTDHKPLIYALQQNHDKMPAIRSRRLSYIAQYNTEIYYLPGEENDVAD
FT                 ALSRINAFTSPTLFNWSDPELFTDPQVKKVLANISAFKLPTMFDAKQLSQE
FT                 QGNDDQLKGILNDASHPLKLRKLTWGSDHAEFYCDIHEDVIRPYIPKKLRK
FT                 AGAKRAQLVNNLK*"
FT   CDS           join(5178..6605,6517..7227,7200..8423)
FT                 /product="Gypsy-32-I_NVi_2p"
FT                 /translation="RPAQGHSQRREPSAKASQAHMGLRSRRILLRYSRRRH
FT                 SSIHSKKVEKGWCKTCTACQQSKVTKHNKFLPKHFIAPDARFDHVHLDLVG
FT                 PFACSHGYTHLLTIIDRYTRWPEAIPIADITAATVARTFYDNWICRYGAPT
FT                 TITTDQGAQFESRLFNELLSILGINRIRTTAYHPASNGMVERLHRDIKTAL
FT                 MCHGDNQEWVRLLPTVMLGLRSRIRLDTDASPADLVFGKTMRIPGDFSPFT
FT                 NEEPNVRTFYNEFRDVMQQLRPVPVSHKTATKPFIHQDMKTCTHAWMQEKP
FT                 IKPALTRPYTGPHKVISRNMENQTFNIDINGTQKTVSLQRLKPAFILQEDP
FT                 DGAKENARPEPIKIPKSTKDNSAQRAPKTSIRTQLPADDIQPAPPSPPIVD
FT                 PPDQPLPVPQPPAPKRVRFVPDTSKCSKNQPSEPVPSAEPGPKRTKFVPNI
FT                 LKRKTNANSIQSRKHTPRKLNSFAGGGGRSANEKRTRIQSSHVNTHRENST
FT                 PLRGGGGAVPNQRYISHRIVSNHTIFLLSMDKLGELRAQLNRFRNNSSDER
FT                 VRADCFNADLELESFENFLRRKLEHRDVRLRMARHHSLADHPVMYEPPIPQ
FT                 LFSNNVPITQLFLRNLNYRLNKNKLREVLSAQGFEDVEITSLKNTKSGSVA
FT                 TLVCKSLASSCKIQVKSCKKELIFTDPKGKVSYIRIRPDQFSSQNALLPTQ
FT                 ASSKKISVLPQALKNISIAAGSLSLLDCPQAVNHLLEYVSANDIYNFYIAS
FT                 FENPKFLAVDFTFDSAADRYNSENGLNRMLDDARKLSFRSILLNAHRITIE
FT                 TPFVNKLLNICVNRRLDPDRRLWLRQVDLSAVAASEQTIRTLSESCTIINL
FT                 TLGSTPGGCDRSLDINKLNTLTLVNNAQLSLKFLTKDCFSLITSLKIIGCN
FT                 EVPMDKLFNFVTINTNLKTLVFKDSQSRNKNSVDLLIAVFSSRNCIEEFQF
FT                 DYSSIREFRTQLIPNMVLNQTTSLRALNLENNDFFKNWIPDPIIDNASNLT
FT                 ELNILGLEFEYSLPLHRLPFLASLKLNYNQAIETTLANLVNKSKLDVLVNN
FT                 TRGKKRTRAINLASLRDVTFGCAKLSLKFINCKFVALASTQRALESDGVIV
FT                 QRSENSIIICKR*"
XX
SQ   Sequence 8549 BP; 2584 A; 2291 C; 1758 G; 1915 T; 1 other;
     ttggtgaccc cgacgtgatt tttggcaacc agccacagca ccttcgacga gaagaatagt        60
     gtcagtgaca gtgcacgcga ctctctctct agcaacggcc tctttgtctc gcacgctcgc       120
     ggacaaagac atgctgcgat tgcgtcagtc aacgcgcatc gcagcccttc cgtgatacgc       180
     tggcacgccg gtacacacgt gaagagccac acaaaaataa gtcgacatca ccgacttcct       240
     cgacacacgt ctccacggtc gagcgcggca gcaacaggtc ggcaagaccc gccgccattt       300
     tctccaagct atacgcgcgc aggcatgccg gcgcgtatat acttgtcgca actcgacgtt       360
     gcgcgagaaa gagtgtgcgt gctggcacgt cgaccaactc gcaccaacgg cttcctggac       420
     accgcagcat agcacagcat ccagaggcca cttcggcgcg gggcagctgc cgccgagttt       480
     tccatcgcac atcagcgcag cgggttcgtc gttggatacg cgtgaagcca ccgacaccgg       540
     cgccttcaac gggggaattg catcactcct gctttgcgtg aagccaccga caccggcgcc       600
     ttcatcgaga agtccagcat cccctcgaca acgcagcggg aaattcttct catcattttt       660
     gcgcggcgat tcacgcggga atcgccattt tttattttat aaggtaaata agtgcgcgcg       720
     cgcgagattt cacacaaagc cgccatcttg cttcggcaag caatcaattc taagaaagcc       780
     agtgcgaacg gctttagttc acagaatcga cacgcacgcg cggcgtagcc actatacaaa       840
     gcgaattcga taaatctaat tcgattcaag cgagtaacaa agttttcttt ttttattttt       900
     acacagacaa tagcgctata cgaatataca aatacttgcg cctctcgcaa gcgctattca       960
     gtcaaaattt atttattaat tcggcattct cacattttat tttatcagga gttccagcaa      1020
     ttaccacttc cggactgtgt tcctcgcaag cggtactacc tgggcttcat caacgcggct      1080
     gatccgcaaa taagcggcaa gcaagcgcta acgcgttaag ttcggcaacg gctcctttcg      1140
     ttgttactgc ctctcggacc gagctacaca tgggcagtac agcaaagcaa ccacgtcaga      1200
     ctctagcgta tccgctgtgc ttgaaccagc tgcaacagca gataaggtaa agaaagctct      1260
     caaaaggtga caatcttaga ttaggcgtga ggcagacaga cattgctttg ttcatgtatg      1320
     tacctgcgag tacattttag tcattttaat aattttgtac gtctgatctg cactcgaggt      1380
     tagattagac actgcgcctc accgcacatg agcgaacgtg acttgcattt acgtctcaga      1440
     tcgggtaggc aggttcctaa attatccttc cccacaagtc acgccaacaa gaggcttaca      1500
     aaatcaagaa atatgacgtt tccaagaaca ccaatcaagt cacaaaatac aaatgaagac      1560
     aacgagaccc aggtcaccac atcgagcgaa agcctacgca ttcagactcc tccagtcaca      1620
     gcgatggcaa acacagatca acctgcaaac acatcagggt taacaacctt cgctcccata      1680
     gactctaccg actcgtcagc agggtccagc caagattata atggccttct aaacgccttc      1740
     gctgttggca caggccagca acgaggtgct tcagggccca acttcaaatt cgggtttcct      1800
     aaccagcaac acgtgtccgc aaacacagcg tcgtctacgt cgtctccaaa aaacacgcaa      1860
     acttgcttcg gagcgaaaca atggtcacag acgatagacc actcactgtc gcaaaacacg      1920
     catatgtcta gctcagagat aggtgcctac aaaaagccaa gttggcataa tcaagacaaa      1980
     actgccaatg agcattgaca gttagcagag aagaagtcca cagaaataaa tgccgagcag      2040
     atcatggaat ctgtcgagca caaaataaag agtggcatag aagaaatgaa agattacatg      2100
     aataaatgct tcaccacctt gttcgcgcac taacaagcct catccggtga agacaagagt      2160
     gtacccacga cctcgagttc acctcaggtc acgacgacaa cgaatctgtc aaacttcacc      2220
     acagcaaaca ctacttgctg gacacgagga gcatgcggaa gcgctccatc gaccgtattt      2280
     cctcctcagc agcctcacat accgccgtac gcaccagttc cagtcccagg cacgcaacca      2340
     aacatgggag taggtttccc aacacaggga aatacaggat ttggtcaaca gcacaacgca      2400
     tctgcggcag caagcaccag gcacttgcta ttttggtcgt tctataaaca cgatccacaa      2460
     ggctggttta ggcaactaga ggatctattc gcaacaaata acgtcacgga agacgaagta      2520
     agattcaact ttgtcggcag gtacctcagc ccagacattc accacgagat ccagtacaaa      2580
     atgaatactc tcatcagagg acaaaagtac ctgcaactga agaaaattct caccgacaaa      2640
     tacgctgaga ctccagagca acagctggat agacttttca aaggccttga aatcggtgca      2700
     aaacgaccat cagatttttt cgcagagatg attagcttgc gtgcaaagcc gagtaccaag      2760
     agacacagtc atccagctct ggaaaaatag gtggtcacct cagattcgcc tgatggtatg      2820
     gaactataag gaagaatcag agctcatcat gaacgcagat atggcttatg aggtgcttca      2880
     acaatctcac aacatcagta ccatgaaatt cggcaaccag ccggattcgt caatcagaga      2940
     caccatggaa aggctggacc aacgcattgc ggcaatcgag aaaacgccga acacacaacc      3000
     agatgatcgc tcaagaccca aggggcgaaa caactctcgc aataacgcga acaacaatcg      3060
     cggctctaca ccgaatagat ccaagtccag gtcacgtacc aacggcttat gctttttcca      3120
     caacaagcat ggcaaagaag ctcgcaactg ccagcctccc tgtacctgga aacgtggccc      3180
     tgggcaagac tacagggtga gagaaccggc ggactctaag aagccggaaa actaaagcat      3240
     cctgctgtta aggagactga cagccggtta ccatacaccg cacgtctcca cacgagagac      3300
     attctctcaa ccgacctgtt cttaatagac acaggtgcgg atatctcggt gatacccaag      3360
     ccaaccaact ggcaaggtaa gccaattgac ctcaagctct acgcagtcaa tggctccacc      3420
     atcaacgtct acggcaccgt acttcgtgaa cttgacgtcg gattgcccta cagacttaca      3480
     tggaacttca ctatcgcaga tgttccgcat tcaatcatcg gagctgatct cctcacacat      3540
     tatcatttgc taccagacct caaaaacaaa aggctggtag acggtaatct attcacgcat      3600
     gcgccggcgt ttattaagtc agtgcgcccc atgcaaattt cgtttctggc accaagccac      3660
     aaatacgcca atataatcaa caatttccca aaagtttttg gtcctgatca atttagatcg      3720
     accaagaaac gtggcgtatt tcaccatatc ttaacgacgg gacctcccag cgcacaacga      3780
     gcacggcgtc tcaagccaga aaagctcaag atagcgaaag cagaatttcg caggatggtc      3840
     gaacagggca tctgccgccc atcaaacagc aactgggcaa gcccactgca aatggtaccg      3900
     aagaaaaaca acaaggtacg gccgtgcggc gactaccgca aacttaacat tgatacggta      3960
     cccgatcgct acccagtgcc acacatgcac gactgcatgg catttttaca cggcaaaaac      4020
     attttttcgg ctctggatct gcgtcaggca tatcatcaga tacccgtcgc accagaggac      4080
     atcccaaaga cggcagtcat tacgcccttt ggactctacg agttcccagt catgacgttt      4140
     ggccttcgca acgcgtcaca gacgttccag cgctacatca actcagcgct aggagatctc      4200
     gatttcgtct tcgtctactt agacgacatt ttaatcgctt caacatcgga agaagagcac      4260
     aagaagcacc tggaaacagt gcttagtcgt ctcaacgagc acgagctgca ggtcaattta      4320
     gagaaatgca gtctcggcgt ctcagagctc atcttcctag gccatctcat cacaccaaat      4380
     gggttcaaac caaacccaga gaaggtcaaa gcaatcaacg actttcctct gccgaagacg      4440
     atagaagaac ttcgcagatt tttaggccta gtcaatagtt acaggcgact tcttgcacac      4500
     tcagcagaaa ctcaacgtca cttgaacgac tttctcaaag gtgccaagaa aaaggacaaa      4560
     cgtcctgtcc catggaccaa agaagccgag gcagcattcc aaaagtgcaa agacgacctc      4620
     gtcaaccttt cgtttactgc gtttcccagt gaaaatgcag agctgcgtct cattcccgac      4680
     gcatctgaca ctgccatggg ggcagccctc gagcagcgct cgggtaactc ctggcagcct      4740
     ctagcattct tctcgcagaa attttcacct gcccagatga agtatgccac atacgacaga      4800
     gagctcacgg cgatctacga agccatcagg tacttccacc attaccttga aggtgtcgag      4860
     ttcaagactt atacagatca caagccattg atctatgctc tacaacaaaa tcacgacaaa      4920
     atgcctgcca ttcgctcacg caggctgtcg tacatcgccc agtacaacac ggagatctac      4980
     tacctcccag gagaggagaa tgacgttgcg gacgcactgt cccgaatcaa cgctttcacc      5040
     tcccctacac tcttcaactg gagcgatccg gaacttttta ccgacccaca ggtaaaaaaa      5100
     gttctcgcga acatcagcgc attcaagcta ccaacaatgt tcgacgcaaa gcaactgagt      5160
     caagaacaag ggaatgacga ccagctcaag ggcattctca acgacgcgag ccatccgcta      5220
     aagcttcgca agctcacatg gggctcagat cacgcagaat tctactgcga tattcacgaa      5280
     gacgtcattc gtccatacat tccaaaaaag ttgagaaagg ctggtgcaaa acgtgcacag      5340
     cttgtcaaca atctaaagtg acaaaacaca acaagttttt gccaaaacac tttattgctc      5400
     cagatgctag attcgatcac gtccacttgg acctcgtagg accttttgcc tgcagtcacg      5460
     gctacacaca tctcctcacc atcatcgatc gctatacgag gtggcctgag gcgatcccaa      5520
     ttgcagacat aactgcagca accgtagctc gtacatttta cgacaactgg atttgtcgct      5580
     acggcgcacc aacaacgatc accactgatc aaggtgcaca gttcgaatcc aggctcttca      5640
     atgagctact gtcaattctc gggataaaca ggattcgcac cactgcgtat catcccgctt      5700
     ccaacggcat ggtggagcgc ctccaccggg acatcaagac agccctcatg tgccacggag      5760
     ataatcaaga atgggttcgt ctactgccaa cagtcatgct tggacttcgc tcacgcattc      5820
     gactagacac ggatgccagt ccagctgacc tggtttttgg caagacaatg agaattcccg      5880
     gagacttctc tccgttcacc aacgaagaac ccaacgttcg cacgttctac aatgaattcc      5940
     gcgacgtcat gcagcaactg agaccagtcc cagttagcca caaaacggca accaaaccat      6000
     tcatacatca agatatgaaa acttgcactc acgcctggat gcaagaaaag ccgatcaaac      6060
     cggcattgac acggccatac actggccctc acaaggtcat ctctcgcaac atggagaacc      6120
     agaccttcaa catagacata aatggaacgc agaagactgt atctttacaa cgcctaaaac      6180
     ctgcgttcat tcttcaagag gatcctgacg gcgctaagga aaacgctaga cctgaaccga      6240
     tcaagattcc caaatccaca aaggacaaca gtgctcaacg agcaccaaag acatccatac      6300
     gcacgcagct tccagcagac gacattcaac ctgcaccccc ttctcctcct atcgttgatc      6360
     ctccggatca accgcttccg gttcctcaac cacctgcacc caaacgcgtt agatttgttc      6420
     cggatacctc aaaatgtagc aagaatcaac ctagtgaacc tgttccgtct gcggaaccag      6480
     ggccaaaacg cacaaagttc gtcccaaaca tattgaaacg aaaaacgaac gcgaattcaa      6540
     tccagtcacg taaacacaca ccgagaaaac tcaactcctt tgcggggggg ggggggcgca      6600
     gtgcctaacc aacgttacat ctcacataga atagttagta atcatacaat ttttctttta      6660
     agtatggaca agttaggaga gttgagagct cagctcaaca gattcagaaa caactcgagc      6720
     gacgagagag ttcgtgcaga ctgcttcaac gcggatttgg agctggagtc ttttgaaaac      6780
     tttctacgac gaaagttaga acatcgagac gttcgcctgc gcatggcgag acatcactcg      6840
     ctagcggatc accccgtcat gtacgaacct cccattcctc agctcttctc aaacaatgtt      6900
     ccgatcacac agttgttctt gcgtaattta aattaccgct taaacaagaa taagttgcgt      6960
     gaagttttat cagctcaggg tttcgaggac gtagaaatca cgtccctcaa aaacaccaag      7020
     tcgggctctg tagctacttt agtttgtaag tctctggcat catcctgcaa gattcaagta      7080
     aaatcatgca aaaaagagct aattttcaca gaccccaaag ggaaagtttc atacattagg      7140
     atcagacctg atcaattttc cagtcaaaac gcactgctac ccacgcaagc gtcttctaaa      7200
     aaaatatcag tattgccgca ggctctttaa gtctgttgga ctgccctcaa gcagtaaatc      7260
     acttgttaga atacgtctcg gcaaacgata tttacaactt ctacatagct tccttcgaga      7320
     atccaaaatt tctcgctgtt gactttacct ttgactccgc agcagacagg tacaacagcg      7380
     agaacggatt aaatcgcatg ttggatgatg ccagaaaatt gagcttcaga agtattttgt      7440
     tgaacgcaca tagaatcact atagaaactc cttttgttaa caaattgttg aacatttgcg      7500
     taaatcgtcg gcttgatcca gacagacgcc tttggctacg ccaagtcgat ctatcagcgg      7560
     tcgcagcttc agaacaaacg attagaacgc tgtctgaatc atgcacgatt atcaacctaa      7620
     ctttaggaag caccccaggc ggttgcgata gatccttaga cataaataag ttaaatactt      7680
     tgacactagt taacaacgcg caattatcgt taaaattctt gaccaaagac tgtttctcgt      7740
     tgattacttc gctaaaaatc attggttgca atgaagtgcc aatggacaag ctgttcaact      7800
     tcgttaccat taacactaac ttaaaaacgc tagtatttaa ggacagtcag agcagaaaca      7860
     aaaactcagt tgacctgctc atagcagtat tttctagtag gaattgtata gaggaattcc      7920
     aattcgatta ttcaagcata agagaattcc gcactcaact aattcccaac atggttctga      7980
     atcaaactac ctcactaaga gctttaaacc tagaaaataa tgattttttt aagaattgga      8040
     ttcctgatcc aattattgat aacgcgtcca atctaaccga gttgaacatc ctcggattag      8100
     aattcgagta ttcgcttccg ttacataggt taccattttt agcttctctt aaacttaact      8160
     acaatcaggc tatcgaaact acgttagcca acctagtcaa taaaagcaaa cttgatgtat      8220
     tagtcaataa cacacgaggt aaaaagagaa cccgtgcaat caatctagct tcattaagag      8280
     acgtaacctt tggttgtgct aaattaagtt taaaattcat taactgtaag ttcgtcgctt      8340
     tagcatcaac gcaaagagct ttggaatcag atggagttat tgtacaacgc tcagaaaact      8400
     caattattat ttgtaagcgc taagcgatgc taatgtacta tcaagaaatc tctgtattca      8460
     tmaaatgtaa attactctct agccgctgac agaataaaaa aaaaaaaaaa taaagctact      8520
     catttttttt tccttttcgg ggggagtac                                        8549
//
ID   Gypsy-32-LTR_NVi repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-217
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 1001-1001 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 217 BP; 54 A; 59 C; 69 G; 35 T; 0 other;
     tgtaggtgcc ccactgatag atggcggtac gtccgaccgc ggagatagag agagcagcgc        60
     tagctgcgag cgagcgctga cgccgccgtc agttccgttc tgaccagagc acacgccaga       120
     cgggctagag agagagagag agagagagag accgaaataa agtgccttgt ccaggagaag       180
     agccttgttc ttggtctccg accagcctct tcccaca                                217
//
ID   Gypsy-320_AA-I repbase;    DNA;    INV; 4571 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-320_;
KW   Gypsy-320_AA-I; Gypsy-320_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4571
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4571
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 445-445 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..4418
FT                 /product="Gypsy-320_AA-I_1p"
FT                 /translation="MPKGKRRSEARTEANVPEYNEDGDNDDGDVDDANQAS
FT                 GERFFHPEELKQLIPVFREGCGVTEWINSIDHYQELYSWSDKSTLLYATCR
FT                 LAGAAHQWFLGARQSILTWKDFKQTILLAFPDREDEADVHRKLSRCVKDSK
FT                 ESYDNYVFRMNALGQKGKLSSAAIIKYVISGLSYDVLYSSIATRQYDNIYE
FT                 LLEQIRYCESNMELCKRRSFPPRSTSQKQQVSNPTPKKQPEDSKSSSSPVG
FT                 ARKRSDECFNCHGTGHISINCPQPQRRPRCSLCRKVGHDEQHCFKRNQGER
FT                 QQPNSEPANKQVPEASGDNTAYPISKQGEPEPAADGKFLEVNPNSMVACNV
FT                 IVGGRLKAMQALADSGCPVSLIKQSCIPEGIKLSRANDRDLVGVNDSKIQI
FT                 LGAYSTSILIDTSVYVANLTVVTDNTMKVDLIVGRRFLQDNGFRGLTFLPD
FT                 CSYDIEAMRHVFDGDVVDASILFVDANVELDIGDTVETRALSGDVYELFKR
FT                 EYLNREKPREPLVKHCVEIKLKEDRYYNATPLRLSDYERKQQNKIVQEMLT
FT                 NGIIRESESPYSSRVVLTRKKSGEYRLCVNFKPLNKLVERNHFPLPIIEDQ
FT                 IAKLQGRKYFTSLDMKNGFYHVDIAEDSKKYLSFVTEEGQYEFNKLPFGYT
FT                 NSPSIFARYVMKILKEFVDSGEIVVFIDDILVSSVTVSEHFDLLARLFRTL
FT                 SDNHIELNVKKCSFLKTGVEFLGYYVTFNQIRPSDRHIENVSNFPVPTNDK
FT                 ALQRFLGLMSYFRKFIYRYNHIASPLYELQNRRGSDFKFEAKHYESFDKLK
FT                 EALISKPVLSIYSPKLETQLHTDASSNGFGGILVQRQTYDNQFHPTMFFSR
FT                 KTTAAESVLHSFELETLAIVYSLQRFRVYLFGIHFTIVTDCNSLKATLDKK
FT                 DVNPKIARWALFLEQFDYTIEHRSGTKMQHVDALSRMYCLVIEETDESSNV
FT                 FENALYVNQIKDPRIVKIKSDLELAESKDYEVRDNLLFRKYKNRLLLYVPE
FT                 NMEDSVIFKYHDNLGHFGIDKVSELIKRSYWFPGLRAKLKEHIARCVTCIS
FT                 FNPKQKRLDGPLHLVDKSNKPFATLHIDHLGPLDKTKAKNEHILAVVDAFT
FT                 KFLKLYPTKTTNTRETMKHLKSYFIAYSTPDVIVSDRGSAFTSDLFKTFSS
FT                 DHGFRHQLVATACPQANGQIERYNRTLIPLLSKLVETRNQSWDTVLVDAEF
FT                 LLNNTLNRSIGDIPSRLLFGVLQKRYVSDGLTEYVDGLNSKNDRNLTEIRD
FT                 NASRSISKLQDYNKQQYDKRSKVRTRYCEGDLVSIRNVKQVGVRGKLQPKF
FT                 KGPYVVRKVLDRNRYLISDLDGYQVSNRRFEGIFDPINMRLYQKADNDEVN
FT                 DFSDSEIEYEGVEYLDDEFQ"
XX
SQ   Sequence 4571 BP; 1325 A; 931 C; 1140 G; 1175 T; 0 other;
     gtaattttca gaagtgggat tggatcggat ttgctacgat cggcgcgtta tcgtagaaat        60
     ctcctgattg cggcgcgagt gaaatcggtc gagaacttcg gtaggaaaaa ccacggattc       120
     caaagcgcaa atcggaatcc atcagcggaa agttccgtca agcgaaatcg gcgtgaactt       180
     catcgaaaac gggtggcgca ggcctaacac cagcgtccgg aggtagcagc ggctcgatca       240
     gcgatccgaa cgagcaacaa gcgggcgaca tgccaaaagg gaagcgtcgt tccgaagcac       300
     gaacggaggc gaacgtgccg gagtataacg aggacggcga caatgacgac ggcgatgtcg       360
     acgatgccaa ccaagcgagc ggtgaaagat tcttccatcc ggaggagttg aaacaattga       420
     ttcctgtttt tcgagaaggc tgtggcgtca cggagtggat taattccatc gatcattatc       480
     aagagcttta ttcgtggagt gacaaatcga ctttgctgta cgcaacgtgc cgtctagcgg       540
     gtgctgctca tcagtggttt ctcggcgcaa ggcaaagtat tttgacgtgg aaggatttca       600
     agcagacgat tttgctggct ttcccggatc gtgaggatga agcggatgtt caccggaagc       660
     tgtctcggtg cgtgaaggac tccaaggaat cctacgacaa ttacgttttc cgcatgaatg       720
     cgttgggaca gaaaggcaag ctgagtagtg cggcgattat caagtacgtg attagtggat       780
     tatcgtacga tgtgctctac tccagcatcg caactcgaca gtacgacaat atttacgagt       840
     tgttggaaca gatccggtac tgtgaatcga atatggaatt gtgcaagcgt cgtagtttcc       900
     cgcccaggag caccagccaa aagcagcaag tgagtaatcc gaccccgaag aagcaaccgg       960
     aggatagcaa gtcgtccagt agcccggtag gtgcgaggaa gcgaagcgac gaatgtttta      1020
     attgccatgg aacgggacac atttcgatta attgtcctca accgcaacga cgtccaaggt      1080
     gttcattgtg tcggaaagtg ggacacgacg aacagcattg tttcaagcgg aatcaaggcg      1140
     aacgtcagca accgaacagc gaaccagcaa acaagcaggt acccgaagcg agcggcgaca      1200
     acacggcgta tccgatcagc aagcagggtg aaccggaacc ggcggccgat ggaaagttcc      1260
     tcgaggtgaa tcccaactcg atggtggcgt gtaacgtcat cgttggcgga cgattgaagg      1320
     cgatgcaggc gttggcggat tcaggttgtc cggtgagttt gatcaagcaa tcttgtattc      1380
     cagaaggcat taagcttagt agggccaacg atagggacct agtaggtgta aatgattcga      1440
     agatacagat actaggagcg tactcgacat cgattttgat tgatacgtct gtttatgttg      1500
     ctaacttgac ggtagttact gacaacacta tgaaagttga tttgattgtg ggacgaagat      1560
     ttcttcaaga caatggtttc cgcggattaa cttttcttcc cgattgttcg tatgatattg      1620
     aagcgatgag gcatgttttt gatggcgacg tagtagatgc tagtattttg tttgtcgatg      1680
     cgaatgttga gctcgatatc ggtgatacag tcgagactag agcgttaagt ggtgacgttt      1740
     acgagctttt caagcgtgaa tatttgaacc gtgaaaaacc tcgtgagcct ttggttaaac      1800
     actgcgtgga gattaagttg aaagaagatc gttattacaa tgcgactcct ctacgtctaa      1860
     gtgattacga acgtaagcag cagaataaaa tcgtacagga aatgttgacg aacggtatca      1920
     tccgtgaaag cgaatctccg tattctagtc gcgtggtctt aactcgtaaa aagagcggcg      1980
     aatatcgcct ttgcgttaat ttcaaaccgt tgaataagtt ggtagagcgg aatcattttc      2040
     ctttgccgat catagaagat cagatcgcga agttgcaggg tcgtaaatat tttacgtcac      2100
     tagatatgaa gaatgggttt taccatgtag acatagcgga agattctaaa aagtacctat      2160
     cgttcgtgac ggaagaagga cagtacgagt tcaacaaatt gccgttcggg tatactaatt      2220
     ccccgtcaat attcgcgcgt tacgtaatga agatattgaa agagttcgtt gattcaggcg      2280
     agatcgtcgt gtttattgat gatattctgg ttagctctgt gaccgttagc gaacattttg      2340
     atttgttggc gagacttttc cgtacccttt ccgataatca catcgagcta aacgtgaaga      2400
     aatgttcttt tcttaaaacc ggcgttgagt ttcttggtta ttacgttacg tttaaccaga      2460
     tccgaccgag tgatcgacac attgaaaacg tgagtaattt ccccgtaccg acaaatgata      2520
     aagcacttca acgttttcta gggttgatga gctattttcg gaaattcatt taccgttaca      2580
     atcacatcgc gagcccgtta tacgaattac aaaatcgacg cggatccgac tttaaattcg      2640
     aggcgaagca ttacgaatct ttcgacaagc ttaaggaagc tttgatttcg aaaccagttt      2700
     tgagcattta cagtccgaag ttggaaacgc agcttcacac cgatgcgtca tcaaatggtt      2760
     tcggcggtat tctcgtacag cgtcaaacgt acgacaatca gtttcatcca acgatgtttt      2820
     tctcgcgtaa aactacagcg gccgaatcgg tacttcattc attcgagctc gagacgttgg      2880
     ctatcgttta tagcttacaa cgtttccgcg tttatctgtt cggtatccac tttacgattg      2940
     tgacagattg taattctctc aaagcgacgt tagataagaa ggacgtgaat ccgaagattg      3000
     cacgttgggc gctcttcttg gaacaattcg attacacgat cgaacatcgt tccggtacca      3060
     aaatgcagca cgtggacgca ctgtcccgta tgtattgcct cgtaatcgaa gaaacggacg      3120
     aatcgagtaa tgttttcgaa aacgcgttat acgtgaatca aataaaagac ccgcgaatcg      3180
     tgaaaattaa atctgacttg gaattggcgg aaagtaagga ctacgaagta cgcgataact      3240
     tgctattccg taaatacaag aaccgtcttc ttttgtacgt cccggagaac atggaagatt      3300
     cggtaatctt caagtatcac gataatctag gtcatttcgg aatcgataaa gtcagcgaat      3360
     tgatcaaacg ttcgtattgg tttcccggtt tgagagcgaa gttgaaggag catatcgcaa      3420
     gatgtgtgac ctgcatatcg ttcaatccga agcagaaaag attagatggt ccgttacatc      3480
     tcgttgataa gtctaacaaa ccgtttgcaa cgctccatat cgatcattta ggaccgttgg      3540
     acaaaacgaa agccaagaac gagcatattc tagcggtagt cgacgcattc accaaatttc      3600
     taaagttgta tccgacgaag actacaaaca cacgcgaaac gatgaagcat ttgaagtcat      3660
     acttcattgc atattcgaca ccagacgtga tcgtgtcgga cagaggtagc gcatttacct      3720
     cagatttgtt taagacgttt tcgagcgacc atggttttcg acatcagctt gtggcgacag      3780
     cgtgtcccca ggctaacggc caaatagaac gctacaatcg gactcttatt cctttgctta      3840
     gtaaactcgt cgagactcgt aatcaatcat gggatacggt actcgttgat gcagaatttt      3900
     tgctcaacaa tacgctgaat cgttctatcg gtgatatacc ttcgcgattg ctattcggtg      3960
     ttctgcagaa gcgttacgtt tcggacggtt taactgaata cgtagatggg ctgaattcga      4020
     aaaacgatcg gaatttgaca gaaatccgag acaacgcatc gcgatcgatt agtaagctgc      4080
     aagattacaa caaacagcag tacgataaac gtagcaaagt tcgaactcgt tactgtgaag      4140
     gcgatcttgt ctcgattcgt aacgtgaaac aagtaggagt taggggcaaa ttgcagccta      4200
     aatttaaagg gccatacgtt gtcagaaagg ttcttgatcg caaccgttat ctgatctccg      4260
     acctagatgg ataccaagtg tccaaccgcc gttttgaagg catattcgat cccataaaca      4320
     tgagacttta ccaaaaggcc gataatgatg aagtcaatga tttttcagac tcagaaatcg      4380
     agtacgaagg agtcgagtac ctagatgatg aatttcagtg agtaaatcgt atcaaaatct      4440
     gcaaattgaa ttgaagatgt agcagattag ttagataagt cgaaaatatg taatgtaaac      4500
     aaatatgaaa gagaaaaaaa aaatgtttcg aagaactgtc gcggccgaca gtagtgtcag      4560
     gatggacgtg c                                                           4571
//
ID   Gypsy-320_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-320_;
KW   Gypsy-320_AA-I; Gypsy-320_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 401-401 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 267 BP; 74 A; 70 C; 46 G; 76 T; 1 other;
     tgtagcaacc wtgagcgcac agtcctaacc cccgtgtaga gtaatactcc tagatttttt        60
     tttgtcagtg tagctgtcat tttgacaagt ctgcgttcgc gcacatccgg ctagctctcc       120
     atcagaagcc agagcaaact tccgttccga ctttgtaaaa cacactctcg atcaaaccgt       180
     cgcgcaataa agtacgcttt tatattttct ctttgaaaaa acgtgattaa cgtaaaaccg       240
     tctccgaaca tccggaatta taccata                                           267
//
ID   Gypsy-321_AA-I repbase;    DNA;    INV; 4262 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-321_;
KW   Gypsy-321_AA-I; Gypsy-321_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4262
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4262
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 446-446 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           96..4232
FT                 /product="Gypsy-321_AA-I_1p"
FT                 /translation="MPLTRRMAAKLAEDATGKQTDPPFYDAENDEQRDDVE
FT                 DEENNDQTVPKTQVAGAAKRHETQALNLHPYDVGRLIPEYAEGDGVCKWLR
FT                 RIDHFRAIYGWSEQMCLLYATTRLAGAAANWYRRHEEWIFNWRQFKDRIVI
FT                 AFPETYDEADVHRELEAVKIEKGESYESYVYRVDAIAQKSDFSVSATLKYM
FT                 IRGLRHDKVYSSLLAKQYTSTLELLQHIKWIASNMEMVPTNTYKQPKANSV
FT                 SPAPGTEVICYNCREVGHRSLECPKPQRKERCNKCLRVGHTANVCTAREAA
FT                 TRPAQQDVTSRFDGVKRSTTHAVFEGEEADDQITVDQASQQQIEIEAAGER
FT                 FRSMALIDTGSYTNLIKRKLLPKHLILNVNSEEVVGVNGSKVRILGQFDAA
FT                 LNMLGKVFQARFLVVSDDTMQIDVILGRNFLIVNRIQRLYLKPNDTVHAAD
FT                 YEWFMLGNIDGKCMLGDDSALGMDLDVGDDKETMSCRVQLENLLQRSYLNR
FT                 PRPNKPLVTFEAEIRLKEDKVFSSSPQRLSVFERKELDKIVSDLLQQGIIR
FT                 ESDSPYTSRVVLTRKRNNTFRMCVNYKPLNKIVERNHFPMPVIEDQVAKLQ
FT                 GKRYFTSLDLKNGFYHVDLTEESKKYTSFVTDSGQYEFNRLPFGYANSPAI
FT                 FVKFITKVLERYIKEGRVIVFIDDMLIASNTLSEHFRTLDEVFQTLADNHL
FT                 ELQFAKCQFVKTHLDYLGYEVQCNQIKPSDRHVESIKNFPIPTTRKSLQRF
FT                 LGLVNYFRKFIQGFNVQAGPLYELLKEDREFVMSADHLHAVESLKEALISK
FT                 PVLRIYSPNAETELHTDASSSGFGGVLLQRQSDDGMMHPVMYHSRKSTVPE
FT                 SKLHSFELETLAIIYCLQRFRPYLFGMKFSIVTDCNSLKQTLEKRDINPKI
FT                 SRWAMYLEQYEFVIIHRSGARMQHADALSRSNVHTLVEEKYGPNVFDDALC
FT                 VAQLQDPEVRRIVVSVEEQQAKDFEVRNAILYKLVGRKSLVYVPEKMVPSV
FT                 INKFHNQMGHFGVDKVCELIRRVYWFPRMRDHVQQHAKSCITCIAYNPKNK
FT                 RFDGNLQDIDKPKVPFEVVHVDHLGPLERSKGKNEHIFVVVDSCTKFVKLF
FT                 PTKTTSTKEVMKALKGYFQSYSTPKVLVSDRGTAFTSLAFGRFVEDHGFKH
FT                 VKVATACPKSNGQVERYNKTLVPLLAKLVEESGRSWDTVLIDAEFLLNNTA
FT                 NRSTGKTASTLLFGVNQRKRIDYDLTQYLQDQNNSARDLEGFREEASRTMQ
FT                 KQQLYNKRVYDSHCKRNTLYEQGDLVMLRRMNTVGERNKLKPKFRGPYVVK
FT                 KVLDNNRYVVADLDNYQVSNIRFEGIFDPLNMRLYRKAENREKSEDTESDI
FT                 EYEDVEYLEEEDELVG"
XX
SQ   Sequence 4262 BP; 1297 A; 814 C; 1068 G; 1082 T; 1 other;
     gcttcagaag tgggatccgg atgtcctgaa gcgctgcgga acgaccagaa cgacgaataa        60
     acggattgat tggcgcttca acgagttttg cgacgatgcc gttgacgaga cgaatggctg       120
     caaagctggc ggaagacgcg accggaaagc aaaccgatcc gccattttat gacgctgaaa       180
     acgacgagca gagagacgac gtggaagacg aggagaacaa cgatcaaact gtacccaaga       240
     cgcaagtggc tggagctgcc aaacgacacg agacgcaagc attgaacctg catccctacg       300
     acgttgggcg attaattccc gaatatgcag agggagacgg agtgtgtaag tggttgcgac       360
     gaatcgacca tttccgtgcg atctatggct ggtcggagca aatgtgcctg ctgtacgcaa       420
     caacacgatt ggcgggtgcg gctgcaaatt ggtacagacg gcatgaggag tggattttca       480
     attggcgaca gtttaaggat aggatcgtta tcgctttccc cgaaacgtat gatgaggccg       540
     atgttcaccg tgaattggaa gcagtcaaaa tcgagaaagg agaatcatat gagtcgtacg       600
     tgtaccgtgt agacgccatt gcacagaaga gcgatttcag tgtgtcagct acattgaagt       660
     atatgattag agggttacgt cacgataagg tctacagcag tttgcttgcg aagcagtata       720
     cgtctacgct ggagttgttg caacacataa agtggattgc ctcaaacatg gaaatggttc       780
     ccacaaacac ctacaaacaa ccgaaagcaa attcagtgtc accagccccg ggaacagaag       840
     tgatttgtta caactgccgt gaagtaggtc atcgctcact ggaatgtcca aaaccacagc       900
     gcaaagaacg gtgcaacaag tgtctacgtg ttggtcatac agccaatgtt tgtacagccc       960
     gcgaagcagc tacacgaccg gcacagcaag atgtcaccag tagattcgac ggagtgaaac      1020
     gatccaccac acatgcggta ttcgagggcg aagaagcgga cgatcaaatc accgtggacc      1080
     aggcttcgca gcagcaaatt gagatcgagg cagcaggaga gcgttttcga tcgatggctc      1140
     tgatcgatac aggtagctat acaaatttaa tcaaaagaaa actgctacct aagcatttga      1200
     ttctaaatgt aaacagtgag gaagttgtag gtgtgaacgg ttccaaagtt aggattctag      1260
     gacagttcga tgctgctttg aatatgttag gtaaagtttt ccaagcgcga tttttggttg      1320
     tgtctgatga taccatgcag atagacgtta ttttggggag aaactttttg atagtgaatc      1380
     gtatacaacg attataccta aaacctaacg ataccgttca tgcggcagac tatgaatggt      1440
     ttatgcttgg caatattgat ggaaagtgta tgttaggcga tgactctgcg ttggggatgg      1500
     atttagatgt aggcgatgat aaggagacga tgtcttgtcg tgttcagttg gaaaacctac      1560
     tgcagcgaag ttatttgaat cgaccacgac ccaacaagcc tttggtgacg tttgaagcgg      1620
     aaatacgttt gaaggaggac aaagtgtttt cgtcttctcc tcaacgcctt agtgtgtttg      1680
     aaagaaagga gttggataag atagtatcgg atttgctgca acagggaatt atacgtgaaa      1740
     gtgactcacc ctacacgtcg cgagtagttc tgacgcggaa acgcaacaac acctttcgga      1800
     tgtgtgtgaa ctataagcct ttgaacaaga tagtagagcg aaaccatttc cctatgccag      1860
     taattgagga ccaagtggca aaactacagg gtaaacggta cttcacttcg ttagacttga      1920
     aaaatgggtt ctatcatgtg gatttaaccg aagaatcaaa gaagtacact tcctttgtga      1980
     ctgacagtgg acaatatgag tttaatcgtt tgccttttgg ctatgccaat tctccggcaa      2040
     tatttgtcaa attcattaca aaggttttgg aacgttatat caaagagggt cgagtaatag      2100
     ttttcattga cgatatgctc atcgcttcga atacattgag tgaacacttt cgaacgctag      2160
     acgaagtgtt tcaaacgtta gcagacaacc atttggagct acagttcgct aagtgccaat      2220
     tcgtcaaaac acatttggat tacttgggtt acgaggtgca atgcaaccaa attaagccaa      2280
     gcgaccgaca cgtggaatca attaaaaact ttccaatccc taccactcgg aaaagcctgc      2340
     aacgttttct gggtcttgtc aactatttta gaaagttcat ccaaggtttt aatgtacaag      2400
     caggcccact gtatgaacta ctaaaggaag atagggagtt tgtaatgtcc gctgatcatc      2460
     tccacgctgt tgagagtttg aaggaggcgt taatatccaa acctgttcta cgtatttatt      2520
     cgccgaatgc agaaaccgag ttgcacaccg atgcttcgtc atcaggkttc ggcggagtat      2580
     tgttgcaacg acaaagtgat gatggtatga tgcacccggt catgtatcat agcaggaagt      2640
     cgaccgtacc ggagtccaag ttgcacagtt tcgaattgga aaccctcgcg attatctact      2700
     gtttacagcg ttttcggccc tatttattcg gtatgaagtt cagcatagtt actgattgca      2760
     attctctcaa gcaaactctg gagaaaaggg atatcaaccc gaagatttcc cgttgggcca      2820
     tgtatctcga acaatatgag tttgttatca ttcaccgttc gggggccaga atgcagcatg      2880
     cggatgcact ctctcgttcg aatgtgcata cactagtaga ggaaaaatac ggtccaaacg      2940
     tgtttgatga tgctttgtgt gttgcgcagc tacaagatcc cgaagtaaga aggattgtgg      3000
     tttctgtcga agagcagcaa gcaaaagact tcgaagtaag aaatgctata ttgtataaac      3060
     tagtgggacg aaaatctttg gtatatgttc cggagaaaat ggtaccatcg gttattaata      3120
     agttccataa ccaaatggga catttcggtg ttgataaagt gtgtgagctg ataagaagag      3180
     tttattggtt tccacgaatg cgtgatcacg tacaacaaca cgcaaagtct tgtataacgt      3240
     gcattgcgta taatcccaaa aacaaacggt ttgacggaaa tctgcaagac atcgacaagc      3300
     caaaagtacc ctttgaagta gttcatgtag accatctggg cccattagag cggagtaagg      3360
     gaaaaaatga acacattttt gtagtcgttg attcttgcac aaaatttgtg aaacttttcc      3420
     caactaagac cacgagcaca aaagaagtga tgaaagcttt gaaaggatat tttcaatctt      3480
     attcgactcc gaaggtgctg gtttcggata gaggaaccgc gttcacgtcc cttgcatttg      3540
     gaaggtttgt ggaagatcat gggtttaaac acgtaaaggt tgctaccgca tgccctaagt      3600
     caaacggtca ggtggaacga tacaacaaaa cgttggtacc actgctggct aaattggttg      3660
     aggaatcagg tagaagttgg gacacagtac ttattgatgc ggagtttctt ttgaacaata      3720
     cagcgaatcg ttctactggc aagacggcat caactctatt gtttggggtt aatcagagga      3780
     aacgcatcga ttatgattta acccaatatt tgcaggatca gaacaacagc gctagagatt      3840
     tggaaggttt tcgagaagaa gcaagccgaa ctatgcagaa acagcaactg tataataaac      3900
     gtgtttatga cagtcattgc aaacggaata cattgtatga gcagggagat ttggtgatgt      3960
     tgcgaaggat gaacactgta ggagaaagaa ataagctcaa accgaagttt agaggtccat      4020
     atgtggtgaa gaaggtcctc gataacaatc gttacgtggt tgctgattta gataattacc      4080
     aggtgtcaaa catacgtttt gaaggaattt ttgatccact aaatatgcga ctctatcgaa      4140
     aggcagagaa tcgagaaaaa agcgaagata cggaatcgga tattgaatac gaagatgtag      4200
     agtatttaga ggaagaagat gagttagttg gctagtttcc taggtgtaca ggatggccga      4260
     gc                                                                     4262
//
ID   Gypsy-321_AA-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-321_;
KW   Gypsy-321_AA-I; Gypsy-321_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-204
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-204
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 402-402 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 204 BP; 66 A; 35 C; 43 G; 60 T; 0 other;
     tgtaagcgtg aaagaagaga gcatttgata tccccttgta tttagagcaa aaaagtaatt        60
     gaccattgtt ataccccttg aatgttaggt ttccctccaa aaaagaatac gattgtcagt       120
     ctgagttgag gagtgccaca gagtggtaat aaaacgtgca aaattcagtt acagtgtcgt       180
     tattttttct gcaaagagcc tcca                                              204
//
ID   Gypsy-322_AA-I repbase;    DNA;    INV; 4502 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-322_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4502
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4502
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..4352
FT                 /product="Gypsy-322_AA-I_1p"
FT                 /translation="MANTDTQGSGASGTSSNTVKMEGNAVTVAPVIRAGMF
FT                 GQIEPFVVGENFVEYINRLEMFFLVNDTPEDKKVPVLITVAGPSLYTVSVR
FT                 LCAPEDPRVKPYQVLVDLLKQHLAPTTNVVAERYKFRKCEQHSSQSITDFI
FT                 ISLKAMSQSCNYGDFLPDALRDQFVAGIYDQSLRKRLLTEAQLTFDSACSL
FT                 ARSWEAALNQNQEMSSLTSSSSKIAAVHQQNGRPNKRSSQPSNQRKVPANQ
FT                 KSWKSCFRCSRQHDPTKCPAQSWMCYTCGKQGHTSKVCQSRKSLTSQGQGK
FT                 KSKGNNRVAEMSEALEVLRLNLFEVPEAKVPASNSCRPTSPEPCLQEYRST
FT                 PGDNAVCPSGLNRLNLPEFVPLVCEGQRLDFEADCGACRSVISAGTYRNHF
FT                 SNFPLIPTAQEYLSVSGQKIRPLGSVTLRVVASSGISGRLGLIVIPTDREM
FT                 NPLLGRDGLDLIYPEWRRIFSDKSVSTLQSSFESELKSKFPKIVSESAKDA
FT                 INGFTAEIVLKPNTTPVFHKAYSVPFLLREKVDSGLEKLVSEGILFPVKTS
FT                 PWASPIVSVLKKDGSVRICLDGKATLNRYVTAEHYPLPRIDDILASVANWK
FT                 IFCKIDLSGAYLQVSLSETSRSICTINTHRGLFSFTRMPFGITSAPAIFQS
FT                 IIDQILDGTPGIAYLDDIIVGGSSVDDCRKNLMSVLQKLNDHNVKINLTKS
FT                 RFFEDSIDYVGYTITSDGIRPSESKVRAILDAPAPNNVAQLQAYLGLLNYY
FT                 HRFLPNLSIELRPLYDLLKKNCRFNWTPNCEQSFLKTKSLLVENNLLEPYD
FT                 PLKPIILAVDASSYGVGAVLSHLVDNVEKPICFASSTLTPAQANYAQVHKE
FT                 ALAVVFGITKFNKYLYGAKFTLVTDNTAVKEIFNPSKCTSVIAATRLQRWA
FT                 LLVAGYQYVIEHRPGKLLNHADALSRLPLPEKTDIEHVSLGIKCLNNASSI
FT                 VNLDLVRTHQKSDRVLSEIYNFLQSGWPNQVEPFLQPYSSLKSHFGVDDGV
FT                 IYFDDRVVIPESLKSAVIKQLHSNHDGIVRMKMLGRSYVWWKHMDKDLNEV
FT                 VQKCVVCQQRQSVPREQVESSWSRCERPLQRIHLDLFYFEGHIALIIVDAF
FT                 SKFIDIRLLKSSNGLQVIEQVESFFAYFGIAEEVVSDNGPPFNSELFDTFL
FT                 SVNGVKVSKSPPYHPQSNGLAERGVRTVKDCLKKYLLDEKCKPLSLSRKIN
FT                 RFLISYRNTPCTVTNRTPSSLLYAYTPRTLTNLINPRKVEIESNHPKNVIS
FT                 SKGVPPSKCVPSTSPNRALQSGKTFNVGEKIFYRNHFKEIVRWIPAVVLQK
FT                 LSPLTYLINVDGNVKMVNQIRHSDLSDKFHPSVPTTPTAPQQAEQLDESSD
FT                 DTDQPESTVSSPQRTKSSKKLPKGRQYVHHSRKVRRSNRLKGQPRPTYPK"
XX
SQ   Sequence 4502 BP; 1313 A; 996 C; 971 G; 1222 T; 0 other;
     acttggcgac gaggataaaa cctcacagtg aaaagtgaat aggtagcgaa aaaagtttcg        60
     cgcagtgaaa gttgtgcagt cagttgaaca cgtgttagta acctaacctc caaatggcga       120
     acactgatac gcaaggtagt ggtgcaagtg gtacatcatc gaatactgtg aaaatggaag       180
     gaaatgctgt tacggtcgct ccagtcattc gagctggcat gtttggtcag atagagccgt       240
     ttgtcgtagg ggaaaatttt gtggaatata taaatcgatt ggaaatgttc ttccttgtca       300
     acgatacccc ggaagataag aaagtgccgg tgttaattac tgtcgccggt cccagtcttt       360
     acactgtctc tgtaagactg tgtgcaccag aagatccccg tgtcaagccc taccaagtcc       420
     tggtagatct tttgaagcag catctcgcac ccaccaccaa tgtagtcgcc gaaagataca       480
     agtttcggaa gtgcgagcaa cactcttcgc agtccatcac ggattttatt atcagtctga       540
     aagcaatgtc tcaatcctgc aactatggag atttcctacc ggatgcccta cgtgaccagt       600
     tcgtcgcggg aatttacgac caaagtcttc gtaaacggtt gctcacggaa gcccagctaa       660
     cgttcgacag tgcgtgctct ctagcaagga gctgggaagc agcactcaac caaaaccaag       720
     aaatgtccag tctaacgtcg tcatcgtcga agatcgcagc agtccaccaa caaaacggaa       780
     ggccaaataa gcgaagcagt caacccagta atcagagaaa agtgcctgcg aaccaaaagt       840
     cctggaaatc gtgttttcgc tgcagtcggc agcatgatcc aaccaagtgt cctgctcaga       900
     gttggatgtg ttacacatgt ggcaagcaag gtcacacgtc aaaagtgtgt cagtcaagaa       960
     agtcgttaac gagtcaaggt cagggaaaaa agtccaaagg aaacaatcgt gtagcggaaa      1020
     tgtctgaagc gctcgaggtc ctacggttga acctgtttga agttccagaa gcaaaagtac      1080
     cagcatcaaa ttcgtgtcgt cctaccagcc cagaaccatg tctccaggaa tatcggtcca      1140
     ctcccggaga taatgcagtc tgtccaagtg gcctgaaccg cctaaatcta ccagaattcg      1200
     tacctcttgt gtgcgaaggt caacgtcttg acttcgaagc ggactgtgga gcatgtcgta      1260
     gcgtgatatc ggcaggaact tatcgaaatc atttttcgaa ttttccttta attcctactg      1320
     ctcaagaata tctttccgtt tcaggtcaaa aaatacgtcc gttgggtagt gtcacattac      1380
     gcgtcgtcgc ttcatctgga atatccggtc gtctgggcct gatagtaatt cccaccgatc      1440
     gagagatgaa cccgctgtta ggtcgagatg gtctggatct catctatcca gaatggcgga      1500
     gaatcttttc cgataagtcc gtgagtacct tacaatcgtc ttttgaatct gagctcaaat      1560
     cgaaatttcc aaagattgtg tccgaaagcg caaaggatgc aatcaacggt tttaccgcgg      1620
     aaattgtctt aaagcctaat acgacgccgg tctttcataa agcttattcg gtaccgtttt      1680
     tgttgcgcga aaaagtcgac agtggactag agaagttggt ctcagaagga attctgtttc      1740
     cagtaaaaac ttctccatgg gctagtccaa tcgtaagtgt ccttaaaaag gatggctcgg      1800
     tgcgcatttg cctcgatggc aaagccactc ttaatcggta cgttaccgcg gaacattacc      1860
     ctcttccaag gattgacgat attttggcta gtgtagcgaa ttggaagatt ttctgtaaaa      1920
     tcgatttgtc cggagcgtat ttgcaagttt cgttgtcaga aacgtcgcgt tcgatttgta      1980
     caataaatac tcatcgcggt ctcttcagct tcacaagaat gccgtttggc atcacttccg      2040
     cgcccgcgat atttcaatca atcattgacc agattttaga tggtacacca ggtattgcct      2100
     acctggatga tatcatcgta ggtggatcgt ctgtagatga ctgtagaaag aatctcatgt      2160
     cagtcttaca gaagctaaac gaccacaatg tcaaaataaa tttgaccaag tcacgtttct      2220
     ttgaagatag tattgattac gtcggttaca ctatcacaag tgatggtata cgccccagtg      2280
     aatcaaaagt aagggcaata ctcgacgccc ccgcacccaa taatgtagct caactgcaag      2340
     cttatcttgg gttgcttaat tattaccacc gttttttacc caatctgtcg attgagttac      2400
     gtcctttata cgatttgttg aagaaaaact gtcgttttaa ttggacccca aattgtgaac      2460
     aatctttcct gaaaacaaag tctcttctag ttgaaaataa tttgctagaa ccgtatgacc      2520
     cattaaagcc aataatttta gctgtcgatg ccagttctta tggtgtcgga gccgtgcttt      2580
     ctcacttagt ggacaatgtc gagaagccta tatgtttcgc ttcttccacc ctcacacctg      2640
     ctcaggcgaa ttatgcccag gtgcataagg aagcattagc tgttgtgttt ggaattacga      2700
     agtttaacaa gtacctgtac ggtgctaagt ttaccttggt aaccgataac actgccgtga      2760
     aggaaatctt caatccatct aaatgcacct ccgttatcgc tgctacaaga ctacagcgat      2820
     gggctctatt ggtagcaggt taccaatatg tcatagagca tcgtcctgga aaacttttaa      2880
     atcatgccga cgctctatct cgattaccac ttcctgaaaa aactgatatt gagcacgtca      2940
     gtctcggtat caagtgcctt aataatgcgt ctagcatagt aaacctcgat cttgttcgta      3000
     ctcatcaaaa gtcagatcga gttttgtctg aaatttataa ttttctccaa agtggttggc      3060
     cgaaccaagt tgaacctttt ttacaaccct attcaagtct aaaatctcat tttggagttg      3120
     atgatggtgt tatctacttt gacgacagag tagtaatacc cgaaagctta aagtcggctg      3180
     tcattaagca actgcactcc aatcacgatg gaatagtccg aatgaaaatg ttgggtcgta      3240
     gctatgtttg gtggaaacat atggataaag acctcaacga agtagttcag aagtgcgttg      3300
     tttgccagca acggcaatca gtgccacgcg aacaagtaga atcatcgtgg tcaaggtgtg      3360
     aacgtcctct tcaaaggatt cacctagacc tgttctactt cgagggtcat atcgctctaa      3420
     ttattgtaga tgcattttca aaattcatcg atattcgttt gctgaagtca agcaatggtc      3480
     tgcaagtaat tgagcaagtc gaatcctttt ttgcctactt cggaattgca gaagaagttg      3540
     tcagtgacaa cggtcctccc ttcaattcag aattgttcga cacttttctt agtgtgaatg      3600
     gtgttaaggt atcaaaatct ccaccctatc acccgcaatc gaacgggttg gccgagagag      3660
     gcgtaagaac cgttaaagat tgcttgaaaa agtacttgct cgatgaaaaa tgtaaaccat      3720
     tatcattatc gcgtaaaatc aatcgctttt taatctcgta tcgcaacact ccttgcacgg      3780
     ttactaatcg tacaccgtcg tcgttactct acgcatatac gccgcgaaca ttaaccaacc      3840
     taattaatcc gcgtaaggtt gaaattgaaa gcaatcaccc taaaaacgtg atttcttcta      3900
     aaggcgtacc tccgtctaaa tgcgtacctt caactagtcc gaatcgtgct ctacaatcgg      3960
     gtaaaacgtt caacgttgga gaaaagatat tttaccggaa tcattttaaa gaaatcgttc      4020
     gttggatacc tgcggtcgtt ttacaaaagc tcagtccatt aacttattta attaacgttg      4080
     acggaaatgt aaaaatggta aaccaaattc ggcattcgga cttgtcggac aagtttcatc      4140
     cttccgtacc gaccacgcct acagccccgc agcaagcaga gcagctcgat gaaagcagcg      4200
     atgacaccga tcagccagaa tcaactgtgt catccccaca gaggacgaaa tccagcaaga      4260
     aactgcctaa aggtagacaa tatgtgcatc actctcgcaa agtacgtcgt tcgaatcgac      4320
     taaaaggaca gccgagaccc acgtacccga aatgaatcga tgaaagtcgt tctactgatg      4380
     caaatgatta attcacctaa aagatgaaaa gaaaagtatt gtaattattg aaattcaata      4440
     ttgtaatgtt agatataagt ttttgattga ttttatgtga acgaatgtta aaggggagaa      4500
     gc                                                                     4502
//
ID   Gypsy-322_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-322_;
KW   Gypsy-322_AA-I; Gypsy-322_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 403-403 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 241 BP; 65 A; 49 C; 46 G; 80 T; 1 other;
     tgtagtgtcc ctcgccttac tataaatgag gtaccaaccg tcaagtatca aattagtttt        60
     tttatggcta aaggctactt ccttccacgt tgagtgagaa cggtctcttt taccatccgg       120
     cggttggacc gatcagtcgt gcctaattag ttccttcaac ccttgtatta tttctaaagt       180
     aataaagtag tttaaaagaa gtgtgtccgc gtgcagttat tstctaaccg aagatataat       240
     a                                                                       241
//
ID   Gypsy-323_AA-I repbase;    DNA;    INV; 4604 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-323_;
KW   Gypsy-323_AA-I; Gypsy-323_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4604
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4604
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 447-447 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..4475
FT                 /product="Gypsy-323_AA-I_1p"
FT                 /translation="MPRRKVGRKSLGPEEDXDESREEEETAKEQIAEEETN
FT                 DGNVLLPSRAAVGFERCFHPEELKQLIPLFKEGGGVSDWLQTIDHYRGMYS
FT                 WSSKTTLLYASCRLSGAAYQWYLGERPSILAWDDFKAKICVAFPDYEDEAD
FT                 VHRRMAKCVKDGKESYDNYVFRMNAIGQNGKLSNSAIIKYIISGLSXDPLY
FT                 GSIATRKYATIYELLEHIRYCESNQEMCKRRSYTTKVNFAKAATVTGGSKK
FT                 QHEDSRSSNDGDGHPKRNSKDECFNCHGSGHISINCPQPQRRPRCSVCYKV
FT                 GHGEETCYKRRGEPNARSSGEVAVPKPSVSTSNQVYLIATGSSGDSGGVGK
FT                 FLEVDCQSLVPVELDIGDQLQTIEALADSGCPVSLIKTSCFPDKQTYCKDN
FT                 NEALVGANDSQIEIVGSYSTRAKIRSDVFVANLTVVANNTMKMGMILGRKF
FT                 FEENDIRGLIFERDRSVKASFDIEAMQDVFDGEDESLFVNANCTLDVGDSD
FT                 ETRSLSGTVCKLFETEYLSREKPIEPLVKHCVEIKLKDNRYFNSTPQRLSE
FT                 YERKEQNKIIEDLLAKGIIRESESPYTSRVVLTRKKNGEYRLCVNYKPLNK
FT                 LVERNHFPLPIIEDQISKLQGRKYFTSLDMKNGFYHVDIEEDSRKYTSFIT
FT                 ESGQYEFNKLPFGYANSPAIFSRYVSKVLDPFIKSDEVVVFIDDIMASSET
FT                 IEEHLDLLKRLFRVLSDNHIQLNIKKCSFLKLNVVFLGYEVTFNQIRPCNM
FT                 HIENVEKFPVPTSEKALQRFLGLMSYFRKFIYRYNQIANPLYELVNSHDKN
FT                 FKFESRHYEAFEKLKDALISKPVLSIYSPALETQLHTDASASGFGGILMQR
FT                 QLIDNEFHPVMFYSRKTTAAESVLHSFELETLAIVYSVKRFRVYLFGIPFK
FT                 IVTDCNSLKATLAKKDVNPKIARWALYLDQFDFEIEHRAGTKMQHVDALSR
FT                 MHCYAIDRETDSIFDNALYVNQIRDSNIVRIKADLENRESKFYEVRDNLLF
FT                 RKYKDRLLLYVPVSMEQSVMFKYHNGLGHFGIDKVSELIKRSYWFPQMQSK
FT                 LKDHISKCITCIAFNPKLKKLDGPLLIVDKISIPFHTIHADHLGPLTLTKG
FT                 KNVHILAIVDAFTKFLKLYATKTTNSREVMKHLKSFHIAYSVPEVLVTDRG
FT                 AAFTSKQFASFVKDHGIRHQLVATACPQANGQIERYNRTLIPLLSKLVEER
FT                 SQDWDTVLVEAEYLLNNTFNRSIGDVPSRLLFGVVQKRNVPEDLTAYVDML
FT                 NEKFDRDLPAIRNAASRNIRKLQEYNKDQYDMRSKADTLYREGDLVSVRTV
FT                 KQVGERSKLNPKFKGPYVVKKVLDRNRYVISDIEGYQVSNRKFEGIFDPSN
FT                 MRLYQKNPEEEISKFSDSEEEYEDVEYLDQSEIGSYVDEEYLDEEKAT"
XX
SQ   Sequence 4604 BP; 1369 A; 902 C; 1185 G; 1143 T; 5 other;
     acttattcag aagtgggatc agccctagtc cgaaaagttt tcgcgttccg gctgacctga        60
     aaagtgcgac aaatcgtgtt tgcgagtatc gagttgttgg gtacgaaaaa cccggattca       120
     agcgtcgaaa cgaatccatc gaaaagcgcg tgggaagtta gtgccgacca gtgaaaacgg       180
     gaggcgtaat accagccccg tccggagaca gcgattttgg accttccagc gagcaagcga       240
     aaatgccgcg gcgaaaggtt ggccgaaagt ctcttgggcc ggaggaggac gasgacgaga       300
     gcagggagga agaagagaca gcgaaggagc agattgcgga agaagaaaca aatgacggca       360
     acgtgctgct gccatctcgt gctgccgtag gtttcgagcg atgttttcat ccggaggagc       420
     tgaagcagct aattccatta ttcaaggaag gcggtggagt ctcggattgg cttcaaacaa       480
     tcgaccacta tcgtggtatg tattcgtggt catctaaaac gacattgttg tacgcatcgt       540
     gccgactttc gggtgcggcg taccagtggt atctcggcga gcggccatcg attctggcgt       600
     gggacgattt caaggcgaag atttgtgttg ctttcccgga ctacgaagac gaggccgatg       660
     tgcaccgacg aatggcgaag tgcgtgaagg atggaaagga gtcgtacgac aactatgtgt       720
     tcaggatgaa tgccatcgga cagaacggaa agttgagtaa ctcagccatc atcaaataca       780
     tcatcagcgg tctgtcatwt gatccgctgt atgggagcat cgctacacgg aagtacgcaa       840
     ccatctacga gctgctcgaa cacattcgtt actgcgagtc gaaccaggag atgtgcaagc       900
     ggcggagtta tacaacgaag gtaaactttg ccaaggctgc tacagtgacg ggaggtagca       960
     agaagcaaca cgaagattcc cgttcaagca acgacggcga tggacatccg aaacggaact      1020
     cgaaggatga atgtttcaac tgccacggtt ccggacatat atcgataaat tgtccgcagc      1080
     cccagcggcg gccccggtgc tcggtgtgct acaaagtggg tcatggtgag gagacgtgtt      1140
     acaagcgacg aggtgaaccg aatgcaagat ctagcggcga agtagctgta ccgaagccgt      1200
     cggtgagtac cagcaaccag gtgtacctaa ttgcgaccgg gagcagtggc gacagcggtg      1260
     gcgttggaaa gtttttggag gttgattgtc agtcgttggt cccagtggag cttgatattg      1320
     gagaccagct gcagacgatc gaagcgcttg cggattccgg atgcccggtg agtcttatca      1380
     aaactagttg tttcccagac aagcaaacgt attgcaaaga taataatgag gctctagtag      1440
     gggcgaacga ttcgcaaatt gaaatagtag ggtcatactc gacgagagcg aagattcgat      1500
     cagatgtttt tgtagctaat ctaactgtgg tcgctaacaa tacgatgaaa atgggcatga      1560
     tcttgggtcg aaagtttttc gaagagaacg atattcgtgg tttgatattt gagcgcgatc      1620
     gaagtgtaaa agcaagcttc gatattgaag cgatgcaaga tgtttttgac ggcgaagacg      1680
     aatcgttgtt cgtgaacgca aactgcactc ttgatgtggg tgactcagat gaaaccagat      1740
     cgttaagcgg tacagtgtgt aaacttttcg aaactgagta cttgtctcgc gagaagccga      1800
     tcgaaccgtt agtgaaacac tgtgttgaga taaagctcaa ggataaccga tattttaatt      1860
     caactcctca acgattaagc gagtatgagc gaaaggaaca aaacaaaatc atagaggatt      1920
     tactagcaaa gggtattatt cgtgagagtg aatcgcctta caccagtcgg gtagtgttaa      1980
     cgcgaaagaa gaatggagag tatcgtctct gcgtcaacta taaaccgttg aacaaacttg      2040
     tcgaacgtaa ccattttccg ctcccaataa ttgaagatca gattagtaag cttcaaggtc      2100
     gaaagtattt tacctcgctt gatatgaaaa acggcttcta tcatgtcgat atcgaggagg      2160
     actcgagaaa atacacgtcg ttcataacgg aaagcggtca atatgagttc aacaaactac      2220
     cgttcggtta cgcgaactcg cctgccatat tttcgcggta cgtttccaaa gttttggacc      2280
     cgttcataaa aagtgatgaa gtagtagttt ttatcgatga tattatggca agctcggaga      2340
     ctattgaaga gcatttagat ttactgaaga ggcttttccg tgtgttatcc gataatcaca      2400
     ttcagttgaa cattaagaag tgctcttttt tgaagttgaa cgttgtattt cttggttacg      2460
     aggtaacttt caatcaaatc cggccgtgta atatgcatat cgaaaacgtc gagaagtttc      2520
     cggtaccgac aagcgaaaaa gcattgcaaa gatttctcgg tttaatgagc tactttcgaa      2580
     agttcatcta tcggtataat cagatcgcga atccgctgta tgaactggtg aacagtcacg      2640
     ataagaactt taagttcgag tcgcgacatt acgaagcktt tgagaagttg aaagacgctc      2700
     taatttcaaa acccgttttg agcatctact cgccggcgtt ggaaacacag ctgcatactg      2760
     acgcgtcagc tagcggtttc ggtggaatac taatgcagcg acaattgatc gataatgaat      2820
     tccatccggt aatgttctat tcgcgtaaaa cgactgcggc agagtcggtt ttacactcgt      2880
     ttgaactcga aacattggcc atcgtgtaca gcgttaaacg gttccgcgtt tatcttttcg      2940
     gcattccgtt caagatcgta acggactgca attcgttaaa agcgacattg gcgaagaaag      3000
     atgtcaaccc gaaaattgcg cgatgggctt tgtatttaga tcaattcgat tttgaaattg      3060
     aacatcgcgc cggtacgaag atgcagcatg tggatgcatt gtctcgaatg cactgctacg      3120
     ctatcgatcg cgaaacggat tccatatttg ataatgcgct ttatgttaac cagatacggg      3180
     actcaaacat cgtcagaata aaagctgatt tagaaaatcg tgaaagcaag ttctatgaag      3240
     tcagggataa tctgttgttc cggaaataca aagaccgtct tctgttgtat gttcctgtta      3300
     gtatggagca gtcggtgatg ttcaaatatc acaatggttt agggcatttc ggtatcgaca      3360
     aagtaagtga actgataaag cggtcgtatt ggtttccgca aatgcagtca aaactcaagg      3420
     accatatttc taaatgtatt acgtgtatcg cgttcaatcc gaagctgaag aagttggatg      3480
     gaccactgct tatcgtcgac aagataagca ttccattcca tacgattcac gcagatcatc      3540
     tcggaccgtt aacattgacc aaaggaaaga acgtacatat tctcgcgatc gtagatgcat      3600
     tcacgaagtt tttgaagctt tatgcgacaa agacaacgaa ctctcgcgaa gtaatgaagc      3660
     atcttaaatc gtttcacatt gcatattcgg tacccgaggt tttagtwacc gacaggggag      3720
     cagcgtttac ttctaagcaa ttcgcgtcgt ttgtgaagga tcatggtata cgtcatcagc      3780
     tcgtagcaac cgcgtgcccg caggcgaatg ggcaaattga gcgatacaac cgaacactga      3840
     tcccgttgtt gagcaagtta gtcgaagaac gttcacaaga ttgggacacg gtattggttg      3900
     aggcggaata tttgctaaac aatacgttta accgatcgat tggtgatgta ccctcacgat      3960
     tgttgtttgg tgtagttcaa aaacgaaatg ttccggaaga tcttacggct tacgttgata      4020
     tgttgaacga gaaatttgac cgggatttgc ctgcaatcag aaatgcagca tcgcgaaata      4080
     tccgtaaatt gcaagagtac aacaaagacc agtacgatat gcggagtaaa gcggacactc      4140
     tgtatcgtga aggtgatctc gtttctgttc ggaccgttaa gcaagtagga gaaagaagca      4200
     agttgaaccc caaatttaaa gggccctacg tcgtcaagaa ggtattggat cgtaatcggt      4260
     acgtaatctc ggacattgaa ggttatcagg tttcgaatcg taaattcgaa ggtattttcg      4320
     atccgagtaa catgcgattg tatcagaaga acccagagga ggaaatctct aaattttcag      4380
     attccgaaga agagtacgaa gacgttgagt atctagatca gtcggagata ggaagttatg      4440
     tagatgaaga gtatctagat gaagaaaaag cgacctaaaa tgtaaacaam acgaaaatgt      4500
     aaacattaga aataagagag aaaaatgtaa ttatttttga acgagaatga gcgcaaacga      4560
     tagacaatct gtcgagggca acagaaaggt caggatggac gagc                       4604
//
ID   Gypsy-323_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-323_;
KW   Gypsy-323_AA-I; Gypsy-323_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 404-404 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 243 BP; 79 A; 51 C; 61 G; 51 T; 1 other;
     tatagcagtg taaaaggtcc aaatagcatt caaacgtaaa atgtgaaacc cacaggggca        60
     aacttggtcg gaaaagcaaa acgcaatcgt tgtgcgtcaa accgtttccg tgcagagctt       120
     tgtcgagcag gaagtgtgag gaaaaagtag cgccgcgttc attctcgata cgtccgtcgg       180
     cgaataaaca cggttttatw atcaaaagcg aagttagcgt gcgcgatccg aaaaattgcc       240
     aca                                                                     243
//
ID   Gypsy-324_AA-I repbase;    DNA;    INV; 4674 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-324_;
KW   Gypsy-324_AA-I; Gypsy-324_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4674
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4674
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-DEC-2018).
XX
CC   A sample sequence. LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           581..4645
FT                 /product="Gypsy-324_AA-I_1p"
FT                 /translation="MEDQLFKIPPFECETVPLSELRQAWFDFKKQFEYAAE
FT                 AVSKKKRKKLKSIFLAVGGRQLQRVYESLPTHDVDATEDQDEFSTVIRRLD
FT                 AYFSPKRHDTFERYSFWNLQPSAGETLDKFLLRAKTMANKCQFGSTERESK
FT                 DAAVIDKVVMLAPPDLRRKILEKSNINLDDLTKLVNSHLSIQQQVRELNQH
FT                 HGNVMSITGGATLVNKINEKFSNVQTMRQTQGRTITECGRCGNSLHKTEDL
FT                 CPAKHEQCRICNFFGHFAKKCRTDPNKYKPSSSIPKKRKIEEFNKQQNSSR
FT                 PKMPRTFNDKVKNVNEITNERKIDSFVYAISDNHDEMIWCKVGQVLIEMMI
FT                 DSGSKFNIINESTWNYLKGKNAAIIDVKPSDKQLSAYAQRGMLEIMCTFEA
FT                 EIRIVNGTRKPSTAQFYVVKGGEQNLLGRESAKELGVLLMGLPSSMEKSDT
FT                 IQHVADGSVEKFPVIKGVKLRIEIDDSVTPVVQHVRRVPIALRNQVEDQIN
FT                 RLLRLGIIERVDQPSPWVSPMVIVIKDDGNVRLCIDMRRANTAIKRQYHVI
FT                 PTLDDLLARLNGSQWFSRLDIKDAYHQVELHESSRYITTFITHLGMFRYTR
FT                 LMFGICSASEYFQRIIEQLLCNCPNTFNYQDDIFIYGKNEEEHDAALARAL
FT                 ETLEAHNVVLNTKKCKFKVTETEFLGHHISRGGLSPTDDKIAAVMNFRSPR
FT                 TAEEVRSFLGLVGYIGRFIPDLATMTFELRQLISRGRTFHWTPQHEIAFSK
FT                 LKEAVCSYPVLGYFNNERRTRIVADASPVGLGAILLQFEDETDDRPIIISY
FT                 ASKSLSASERRYCQTEKEALAIIWSVEKFRLYLLGREFELETDHRPLTTIF
FT                 KSSSQPPGRIERWVLRLQPFKFRVIYKPGKENIADPLSRLSIPSDDEDTDS
FT                 SDDHLYINAITESVAIDVSEIKNTLETDPELLLVRDALLRSDWNDEVTRTG
FT                 AKAYIPFQKDLSLLEGCVIRGCRLVIPKQLRSRMLQLAHEGHPGETVMVTR
FT                 LRDRVWWPGIDGDARKTVKNCEGCRLVSKPSAPEPMQRRKMPNEPWVDVAM
FT                 DFLGPLPSNEYLLVVVDYYSRYKEICVMNKITSEETIKRLEPIFVRLGYPK
FT                 SITLDNGRQFISKDFEDYCFTRNITLNHTSPYWPQANGEVERQNSSLLKRL
FT                 KISHSLNRDWKVDLLQYMMMYNTTPHSVTGKAPTALLQNRVIRSKLPSITD
FT                 LETMLPASTGVHDRDTVMKHKGKEREDLRRHARPSDIQVGDKVLLQNIISA
FT                 GKLTATYDKTEYEVLERTGNRVKITDPVSGRITERNVAHVKKISTSEEIYP
FT                 ETEEHRAVEDQQPVSRSDPPRPSRCANRPSWHQDYVVHTTDDA"
XX
SQ   Sequence 4674 BP; 1490 A; 970 C; 1070 G; 1144 T; 0 other;
     tattggcgac gagaaatcca cgagtgtacg agaaaacagc gttaaagtga gtactttaat        60
     aaaaaaaaaa gaatctcgcc tcgaaagagg gggatgcctt tgcggtggat gaaaatccaa       120
     ccggtgcagg caaaagaaaa tctcgcctca aacgagggag atgcctttgc ggaggatgaa       180
     agtcctaccg gtgcaggcaa gaatatctcg cctcgaaaga gggagatgct ttagcggtgg       240
     atagaaatcc aaccggtgca agcaaaagaa ttgggtcgtg aaaaataaaa tggaactgcc       300
     ggccaaataa gagattcgtt atctcaagtg aaaattttca ctcgtcgaat tcgaccaccc       360
     caaaaacgtg gttgctatgg catcatttga atttcgcgca aagattgctt tgcttcaact       420
     gaaaataaca cggcgagtgg ttaccatagc aactaagggt tgcataccat aacataccat       480
     acgtgttagt caaaggaata atatacgaag aaatgttttg tggatttgtt tacagaaagg       540
     agattcaaag ctaattaagt tatttttctt tacagtagca atggaagatc aactattcaa       600
     aattccacca ttcgagtgcg agaccgttcc cctatctgaa ctccggcaag catggttcga       660
     ctttaaaaag caatttgaat acgctgctga ggctgtcagc aaaaagaaga ggaagaagct       720
     gaagagtatc tttcttgccg tgggaggccg tcaacttcaa cgagtctacg aaagccttcc       780
     aacccacgat gtcgatgcca cagaagatca ggacgagttc agcaccgtga tccgtaggtt       840
     ggatgcatac ttctcaccaa agcgacatga cacgtttgag cgctactcat tttggaactt       900
     acaaccatcg gctggtgaaa cgctcgataa gttcttgttg agggcaaaga caatggccaa       960
     caaatgtcag ttcgggtcga ctgaacgcga gagtaaagat gctgctgtga ttgataaagt      1020
     ggtaatgttg gccccaccag atctccggcg aaaaattcta gagaaatcga atatcaatct      1080
     ggatgatttg accaagctgg taaactctca tttgtccatt caacaacaag tgcgtgagct      1140
     gaaccaacac cacggtaacg ttatgagtat taccggcgga gcaacacttg ttaacaaaat      1200
     caatgagaag ttctctaatg tgcagaccat gcgtcaaact cagggtcgga cgatcaccga      1260
     atgcggtagg tgtggaaata gtctgcataa aacagaggac ctttgcccag ctaagcatga      1320
     acaatgtcgg atttgcaatt tctttggtca ttttgctaag aagtgtagga cagatccgaa      1380
     caaatacaag ccgtcatcat caattccgaa gaaacgtaaa attgaagaat ttaacaagca      1440
     acaaaattca agtcgtccga agatgcccag gaccttcaat gacaaggtga agaatgtgaa      1500
     cgagataaca aatgaacgca agatcgattc tttcgtttac gccatcagcg acaaccacga      1560
     tgagatgatc tggtgtaagg tgggtcaagt acttattgaa atgatgatcg attcaggctc      1620
     gaagttcaac attattaacg agtccacatg gaactatttg aaagggaaaa atgctgctat      1680
     aatcgatgta aaaccatccg ataaacagtt atccgcgtac gctcaacgtg gcatgttaga      1740
     aattatgtgc acttttgagg cagaaattcg cattgtcaat ggcactcgta aaccttcgac      1800
     tgctcagttt tacgtcgtaa agggcggcga acagaatctt ttgggacgcg agtctgccaa      1860
     agaactggga gttctcctaa tgggtctacc aagctccatg gaaaaatcag atacaattca      1920
     gcacgtggct gacggttcgg tggagaaatt tcctgtaatc aaaggagtta aattacgcat      1980
     tgaaatcgac gacagtgtga ctccggtggt gcaacatgtc cgtcgcgtcc ctattgcatt      2040
     acgtaatcaa gttgaagatc aaatcaaccg tctattaaga ttgggtataa tcgaaagggt      2100
     cgaccaaccg agtccgtggg tgtccccaat ggtaatcgtt attaaagatg acggcaatgt      2160
     gcggttgtgt atcgacatgc gacgagcgaa cacagcgatc aaacgacaat accatgtgat      2220
     tccaacgtta gatgaccttc tggctagatt aaatggatca caatggttct ccagactcga      2280
     cataaaagat gcgtatcatc aagtcgagct gcacgaatcg agccgatata tcacaacatt      2340
     cataactcat ctaggaatgt ttcgatatac tcgcttgatg ttcggaattt gtagcgcttc      2400
     agaatatttc caaaggataa tcgagcaatt actttgcaac tgcccaaata cgttcaacta      2460
     ccaagatgac atattcatat atgggaaaaa tgaagaagag catgatgctg ctcttgcgcg      2520
     tgctcttgaa acattggagg ctcataatgt agttctcaat accaagaaat gcaaattcaa      2580
     ggttactgag actgaattcc taggtcatca tatttcccga ggtgggctca gcccgactga      2640
     tgataaaata gctgctgtaa tgaactttag atcccccaga actgccgaag aagttcgaag      2700
     ttttctgggt ctggtagggt acattggccg attcattcct gatcttgcaa caatgacgtt      2760
     tgagctccga caattgatat ctagaggtcg tacgtttcat tggactcctc aacacgagat      2820
     cgcgtttagt aagctgaagg aagcagtatg ttcgtatcct gtactaggat atttcaataa      2880
     tgaacgccgg accaggattg ttgctgatgc gtcaccagta ggattagggg cgattttatt      2940
     acaattcgaa gacgaaactg acgaccgccc gataatcata tcgtatgcca gcaaaagctt      3000
     gtccgcatca gaacgtcgtt attgccaaac tgaaaaggaa gctttggcta taatttggag      3060
     cgttgaaaaa ttccggctat atcttctcgg tcgggaattc gagttagaaa ctgatcatcg      3120
     acctctcact acaattttca aatcctcttc gcaacctcct ggccgaatcg aaagatgggt      3180
     cctaaggcta cagcccttta aatttcgtgt aatttacaag ccagggaagg aaaatatcgc      3240
     tgatccctta tcacgtctat ccattccaag tgatgacgaa gacactgaca gctcggatga      3300
     tcatctgtac ataaacgcga ttacagaatc agtagcaatc gacgtatctg aaattaagaa      3360
     tacgttagaa acagaccctg agttactctt ggtaagagat gctttattaa gatcagattg      3420
     gaatgacgaa gtaactagaa caggggctaa agcatacatt ccattccaaa aagatcttag      3480
     tttgctagaa ggatgcgtca tccgaggatg tcgtctagtg ataccgaagc aactgcgttc      3540
     acggatgttg caacttgcac atgagggtca cccaggcgaa acggttatgg taaccagact      3600
     gcgagataga gtgtggtggc cgggaatcga tggagatgca cgaaaaactg taaagaactg      3660
     tgaaggatgt cgcttggtta gtaagccttc agctccggaa ccaatgcagc gtcgaaagat      3720
     gccaaatgaa ccatgggtag atgtcgcaat ggatttccta ggtccgttac catccaatga      3780
     gtatctgctg gtagtcgtgg actattacag tcgatataag gagatttgtg taatgaacaa      3840
     aatcacatca gaagaaacca tcaagcgtct cgagccgatt tttgtacgat tggggtatcc      3900
     aaaatcaata acactggata atggacggca gtttattagt aaggactttg aagactactg      3960
     tttcacgaga aacattactc taaaccatac ttccccatac tggccacaag ctaatggaga      4020
     ggtggagcga caaaacagct cactgcttaa gcgtctcaag attagccact ctctcaatcg      4080
     agattggaaa gtagacctgc tccaatatat gatgatgtac aacaccaccc cgcactcggt      4140
     aaccgggaaa gctcctaccg cacttctaca gaaccgagta attcgctcaa agttgccatc      4200
     tataaccgac cttgaaacaa tgttaccagc aagtaccggg gttcacgata gagacacggt      4260
     tatgaagcat aaaggaaagg agagagaaga tttgagacgt catgcaagac cttcagacat      4320
     tcaggtagga gacaaagtgc ttcttcagaa tattatttca gctggcaaat taaccgctac      4380
     atacgacaaa acggaatatg aagttttgga gagaactggg aatcgggtga aaataacaga      4440
     tccagtttca ggaagaataa ctgagaggaa tgtggctcat gttaagaaaa tttccacatc      4500
     tgaagaaatc tatcctgaaa cagaagaaca tcgtgcagtc gaggatcaac aacctgtttc      4560
     cagatctgat ccaccacgtc caagccgttg tgcaaatcga ccatcatggc accaggacta      4620
     cgtcgtacat accactgatg atgcatagat cctcgcttat gaaaaaaaag gaga            4674
//
ID   Gypsy-324_AA-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-324_;
KW   Gypsy-324_AA-I; Gypsy-324_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-193
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-193
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 405-405 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 193 BP; 71 A; 24 C; 41 G; 57 T; 0 other;
     tgtggtggtt tgcgagaaat tcaaattaac aaaatcatag caggcgtagg gtgaaaaatg        60
     aggacgagag tcagttagtt tttctaccag cagtggaatg caatcagttt gtattagtgc       120
     aacataagtg ataataaatt aataactaca tttaaattgc attgtgtttt aaagattcga       180
     gtaaaacacc aca                                                          193
//
ID   Gypsy-325_AA-I repbase;    DNA;    INV; 4270 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-325_;
KW   Gypsy-325_AA-I; Gypsy-325_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4270
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4270
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 448-448 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4269
FT                 /product="Gypsy-325_AA-I_1p"
FT                 /translation="MFLRSQKTSEEIQCSGFNPTESNQENVAETRLAESVL
FT                 GDGSLAQRESISDSAEFILGDGNLAQIQDTTRVAISGRQQLSSERGSGDST
FT                 AITMNTFGRPASVAPVCSSQQPVITVVETSNSQAIQPLRPDELSSMLPTFS
FT                 GYNHEDVNHFLKTLSNTKQALNVNDQTMKIVLFKLLKGKAQYWLHSNADFM
FT                 MKSYEELTKNLQAMFTINVNVYHLRSQLAKRTWSGRESFEEYYQSKHSIAQ
FT                 KLNLPEKELVEYLVEGIENQILRNQARIQNFQTVQEVLQAFRLIRLDPAPA
FT                 PVRKWTKLCFSCNQPGHFEADCRAYRGDDINQMKHMQTNSKFGKSKPKMND
FT                 KTIHALEDNDLKQYDGQDKCDGLVNFRLIDNCTNLKALFDTGSPVSLIRRG
FT                 LVKAKDIKQVNNYKSFRGIGGKRLKILGLFTNKIFIQNIVFSIDFYVVPDN
FT                 VLNLIDAIIGRDVIMQPCIRTIIQNNIKIYSIDPGNLKAELPEHKVYKINN
FT                 INSNILDNMKIGNISKDHLATFSEIFRKKYLDYVKPSKPIHEYEMLINLKK
FT                 GEPFHFKPRRLSYDQKRKVEDKINELLNAGIIKESNSPFASPIVLIPKKNN
FT                 DFRLCVDYRKLNKDTVRDNFPLPIIEDLFDNLKDKKYYSILDLKSGFHQIK
FT                 ISPNCTKYTSFVTPSGQFEYLRVPFGLCNAPAVFQRFINKIFEKLIKEGKL
FT                 CVYLDDILIATRTIKEHFEVLQQVFEILSQNLLELNLEKCKFLFDEIDYLG
FT                 YTINNKGRKPNSSHIETVKNFPVPQNCKQVHRFLGLMSYFRKFIQNFAVIA
FT                 RPLYNLLQKDAIFEFGQEQINAFNLLKQKLVSAPILAVFDPHADTELHCDA
FT                 SSFGFGAILLQKQTDNKLHPVSFFSKKTDEYESKLHSFELETLAVIHAIKR
FT                 FHVYLAGKNFKIFTDCNALVQTLKKKEMNPKINRWALFLENYNFELEYRKE
FT                 EKMRHVDALSRIHMYKKVNNNQQTKEMTGCTVGILNESQIEHNITIAQEQD
FT                 SKLKNIKQILVTSTFPNFMLLDGILFRKDNGKNLLVVPKNMIDNILRICHD
FT                 NRGHIGIEKTIVEIKKNFWFSSMRKYVKKHIKNCLSCIFYNPVGKKEGFLK
FT                 IVEKGNTPFNTIHLDHYGPIKIQPNNKFKYILIMTDAFTKFTKLYPTKTTN
FT                 TDEILLHLGNYMNYYSKPVRIITDCGTGFTSTKFQDFLNLNCIEHIKTAIR
FT                 TPQANGQVERINKTLTPMLAKLCNETHYKWDKLLPEIEYVFNNTYNKSINN
FT                 YPSILLFGKMQRDLNDENFNLKSFVHNRQPSSEIQNISEIRAKAQQNNLKL
FT                 QSYNKKMTDRKRTKITKYKEGDFVVLKTIDSHKLSPKFKGPYTISKILPND
FT                 RYVVVDIEGFQISNVPLNAVCSPQNMRKWIDDDSSNIDCLDEDIENVRMAE
FT                 "
XX
SQ   Sequence 4270 BP; 1627 A; 665 C; 722 G; 1256 T; 0 other;
     tcatcagaag tgggattacc caacaagatg tttctacgta gtcagaagac ctctgaagaa        60
     atacaatgtt ccggattcaa tccaaccgaa tcaaaccaag aaaatgtcgc tgaaactcga       120
     ctagcggaat ccgttcttgg ggatggaagt ctcgcccagc gtgaaagtat tagcgactca       180
     gcggaattca ttctagggga tggaaatctc gctcaaattc aagatacaac gcgtgtagca       240
     atctcaggta gacaacagct ttcgtcagag agaggatcgg gagattctac agcaataaca       300
     atgaatacat ttggaaggcc agcatcggtg gcacctgtat gttccagtca acaacccgtt       360
     atcaccgtag ttgaaacatc aaattctcaa gctatacagc cattacgccc tgacgaactt       420
     tcttcgatgt tgccgacgtt ttctggttac aatcatgaag atgtgaatca ttttttgaag       480
     actttatcca acacaaagca agcactcaat gttaatgacc agacaatgaa aatcgtatta       540
     ttcaagctac tgaaaggaaa agcccagtat tggttgcatt caaacgcgga ttttatgatg       600
     aaaagctatg aagaactgac taaaaattta caagccatgt tcaccatcaa cgtcaatgtg       660
     taccatttga gaagccaact tgcaaaaaga acctggtccg gaagagaatc atttgaagaa       720
     tactaccaat cgaaacattc aattgcacag aagctcaatt taccggagaa agaactggtt       780
     gaatatctgg tagaaggtat tgaaaatcaa attcttcgaa atcaagccag gattcaaaat       840
     tttcaaacag ttcaagaggt attgcaagca ttccgattga tacgacttga tccagcgcca       900
     gcaccagtga ggaagtggac aaagctttgc ttttcgtgca accaacccgg acattttgag       960
     gcagattgca gagcttatcg aggagatgat atcaaccaga tgaaacacat gcaaacaaac      1020
     agtaaatttg gaaaatcaaa accaaaaatg aacgacaaga ctatacacgc cttagaggac      1080
     aacgatttga aacaatatga cggacaagat aaatgtgacg gtttggtaaa ttttagacta      1140
     atcgataatt gtacaaattt aaaagctctt tttgacacag gaagtccggt ctcactgata      1200
     cgccgaggtt tggttaaagc aaaagatatt aaacaagtaa ataattataa aagttttcgg      1260
     ggtatcggtg ggaaacggct caaaatttta ggattattca ccaacaaaat ttttattcaa      1320
     aacattgttt tcagtattga tttctatgta gtcccggata acgttttaaa ccttattgat      1380
     gcaatcattg gaagagatgt catcatgcaa ccttgtatac ggacgataat tcaaaataat      1440
     atcaaaattt actcaattga tcctggtaat ttgaaagctg aactccctga acataaggta      1500
     tataaaatta ataatattaa ctccaacatc cttgataata tgaaaattgg aaatatatca      1560
     aaagatcatt tggcaacatt ttctgaaatt tttcgaaaaa aatatcttga ttatgttaaa      1620
     ccatcgaagc caattcatga gtacgagatg ttaattaatt taaagaaagg agaacctttc      1680
     catttcaaac ctcgaaggtt gtcatatgat cagaaacgta aggtagaaga caaaattaac      1740
     gaacttttaa atgcaggtat tataaaagag agcaattcac ctttcgctag tcctatagtt      1800
     ctgattccga aaaaaaataa cgattttagg ctttgcgttg attacaggaa gttgaataag      1860
     gatactgtac gtgataattt tccacttcct attatagaag atttatttga taaccttaaa      1920
     gacaaaaaat attattccat tcttgatctt aaatctggtt ttcatcaaat taaaatttcc      1980
     ccaaattgca caaagtatac ttcttttgta acacccagtg gccaattcga gtatttacga      2040
     gtaccatttg gattgtgcaa tgctcccgct gtatttcaac gttttataaa taaaattttt      2100
     gagaagctca ttaaagaagg aaaattatgc gtatatttgg atgatatttt aatagcaact      2160
     agaacaatca aagaacattt tgaagtttta caacaggttt ttgaaatatt aagccaaaat      2220
     ttattagaac ttaatttgga gaaatgtaaa tttttgtttg acgaaattga ttatcttggc      2280
     tatacaataa acaataaagg tagaaaacca aatagcagtc acatagaaac agtcaaaaat      2340
     tttccggttc ctcaaaattg taagcaagtt cataggtttc ttggactaat gagttatttc      2400
     agaaaattta ttcaaaattt tgctgttatt gccagacctt tgtacaattt acttcaaaaa      2460
     gatgctattt ttgaatttgg acaagaacaa ataaatgctt tcaatctttt gaaacaaaaa      2520
     ttagtttcag cccctatttt ggcagttttt gatccacatg ctgatactga acttcattgt      2580
     gacgcaagtt catttggatt tggtgcaatt ttattgcaaa aacagacaga taataaactt      2640
     catcctgtta gtttctttag caaaaaaacg gatgagtacg aatcaaaact tcatagtttc      2700
     gaattagaaa ccttagctgt gattcatgca attaaaagat tccatgtcta tttggctggt      2760
     aaaaatttca aaattttcac ggattgtaat gcgttggtac aaacattgaa gaaaaaggaa      2820
     atgaatccaa aaataaatag atgggcttta tttttggaaa actataattt tgagctagaa      2880
     tatagaaaag aggaaaaaat gagacatgtt gacgcactta gtcgaattca tatgtataag      2940
     aaggtaaata ataatcagca aacaaaagaa atgacaggat gtacggttgg aatacttaat      3000
     gaatcacaaa tagagcataa tattaccata gctcaagagc aagattcaaa attaaaaaat      3060
     attaaacaaa ttttagtaac atcgactttt ccaaatttta tgttattaga cggaatttta      3120
     tttagaaaag acaatggcaa aaatctatta gtagttccca aaaatatgat tgataatata      3180
     ttaaggattt gccatgataa tcgtggacat ataggaatag aaaaaactat agtagaaata      3240
     aaaaagaatt tttggttttc atctatgagg aagtatgtaa agaaacatat caaaaactgc      3300
     ttgtcgtgta tcttttacaa cccagttgga aaaaaggaag gatttttgaa aatagtggaa      3360
     aaagggaata ctccgttcaa tacaatacat ttagatcatt atgggcctat aaaaatccag      3420
     cctaataata aatttaaata tattttaatt atgactgacg cgtttactaa atttactaag      3480
     ctttatccaa ctaaaacaac taatacagat gaaatacttt tgcatttagg aaattacatg      3540
     aattactaca gcaaacctgt aagaattatc acagattgtg gaaccggatt tacatcaaca      3600
     aaatttcaag attttttaaa tttaaattgt attgaacaca taaaaactgc aattcgaact      3660
     ccacaagcaa atggacaggt agaaagaata aacaaaactt taacacccat gttggcaaaa      3720
     ttgtgtaatg agactcatta taaatgggat aaattattgc cagaaataga atatgtattt      3780
     aacaacactt ataataaatc aataaacaat tatcctagta ttttgttatt tgggaaaatg      3840
     caaagagact tgaatgatga gaattttaat ttgaaatcat ttgttcataa tagacaacca      3900
     tcgagtgaaa tacaaaatat ttctgaaata agagcaaaag ctcaacaaaa taatttaaaa      3960
     ctccaaagtt ataataaaaa aatgactgat agaaagcgta caaaaataac caaatacaaa      4020
     gaaggggatt tcgttgtatt aaaaacaatt gattcacaca aattatctcc aaagttcaaa      4080
     ggcccataca caatttctaa aatattgcca aacgatcgat atgttgtagt tgatattgaa      4140
     gggtttcaaa tttcaaatgt tcctttaaac gcggtttgtt caccacaaaa tatgcggaaa      4200
     tggattgatg atgatagctc aaatattgat tgtctcgatg aggacatcga gaatgtcagg      4260
     atggccgagt                                                             4270
//
ID   Gypsy-325_AA-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-325_;
KW   Gypsy-325_AA-I; Gypsy-325_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-124
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-124
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 406-406 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 124 BP; 46 A; 19 C; 21 G; 38 T; 0 other;
     tgtagtaggc tatggtgaat gattctataa ttaagcaggc tatgactatg acaattgaca        60
     aaactaagac cattattgaa taaaccattg aaaagagtac atcgttgtct taatattccc       120
     taca                                                                    124
//
ID   Gypsy-326_AA-I repbase;    DNA;    INV; 4239 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-326_;
KW   Gypsy-326_AA-I; Gypsy-326_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4239
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4239
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 449-449 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..4205
FT                 /product="Gypsy-326_AA-I_1p"
FT                 /translation="MVDPLDDGAVGGVAAAAGGVAVMPVTFSFEPFNAATS
FT                 KFDRWLERLQVSFRIYHVPEADKRDYLLHYMGGATFDVLCNKLKNAEPQTK
FT                 TFDEIVTLLKEHFSPAPLEILENFKFASRKQLEHETLSDYLMDLEKLAQTC
FT                 NFGDHLDKAIRNQFVFGIRNRVIQSRLLEIRDLTLAKAKEIGFGMEMSHRG
FT                 TDEMHGSRSKNEVQHIEHGVKKTKKKKAFQSSSQVNSHHQSSKSDGRKKQC
FT                 FRCGDPDHFADKCKHKSTVCNCCKKKGHLEKVCLSKNKEKKGTDDAHHLEE
FT                 PCVIKDVFHLSAVRGLAGKFLLNLTINHRELTFEVDTGSPVSLINVRDKRL
FT                 YFNDLDIIPTTTRLVSYCDNDIGVLGKVMVKVVAHDEELTLPLHIAESSRH
FT                 PLLGRDWLLALNLDFNRVFRPGTHSVSYCGGADQSTASALKDLLNKFSHIF
FT                 DERVGKIEGVQASLTVRKDTKPVYVKARPVAFAVRDAVDKEIDQFVSDGIW
FT                 EKVDHSEWATPVVPVKKAGGRVRLCGDYKITLNPHLLVDDHPLPTVEELFA
FT                 TVAGGETFSKLDLSQAYLQLEIRPEDRDLLTMSTHRGLFRPTRLMYGVASA
FT                 PAIFQRLMEQILQGIPGVTVFIDDIRVTGPDCKTHLLRLGEVFKRLDKYNL
FT                 RVNRDKCDFFSDRIEYCGYMVDKAGIHKLRNKIDAIQNMPVPKNKEQVRSF
FT                 VGLITYYGRFFPNLSTILYPLNNLLKDDVPFIWSNDCEKSFSFVKKEMQTD
FT                 RFLVHYDPSLPVILATDASPYGVGAVLSHQYPDGTERPLQYASQTLTRTQQ
FT                 RYSQIDKEAYSIVFGVRKFHQYLYGRRFILVTDNKPISQIFSESKGLPTMS
FT                 AMRMQHYAAFLQAFDYKIRHRRSSDHFNADAMSRLPTPHTDPESEIEEPDV
FT                 VEVNAIETLPLTVDELGSATLSDDSVRELLRALRTGKAVDGKFRFGVDQEQ
FT                 FTLQKDCIMRGSRVYVPPSLRMKVLRELHSTHFGVSRIKSLARSYCWWEGI
FT                 DKDIENLVKDCASCQAAKANPPKVSFHCWETPSEPFQRVHADYAGPFMGYY
FT                 YLILIDAFSKWPAVYVVKNMTTETTIRLCRXFFCTYGLPSVFVSDNGPQFT
FT                 SGDFARFLKMNGIVHKLSAPYHPATNGQAERFIQTMKSKLKSLNCNRSEIH
FT                 SEICNILLSYRKMLHPATGFSPAMLVFGRQIRSRLDLMIPSKDPNRSEVQS
FT                 KVRELTVGTNVAIREYVHENKWEFGIVKERLGKLHYLVQLNDGRVWKRHID
FT                 QLRSVGAGXSSSSTEATSLRGEEIGCQVFHDNTTAVTFDLPLSTTPEEKIH
FT                 ASADMTTAPISTVPIPSTGIQSPISNGMAKTGRSADSASLPADQGLRRSQR
FT                 TIKPPQKLNL"
XX
SQ   Sequence 4239 BP; 1110 A; 944 C; 1051 G; 1130 T; 4 other;
     gtttggcgac gagaagttck gaactgcgtg aaatttaata attgcattat tgcgtcgcgt        60
     ttggctggct gctgcttttc cgcaatatgg tggacccact agacgatggg gccgtcggtg       120
     gcgttgctgc tgctgcaggt ggcgttgctg tgatgccggt tacgttttcg ttcgagccgt       180
     tcaatgctgc gacatcgaaa ttcgaccgat ggttggagcg gctgcaggtt tcattccgga       240
     tttaccacgt gccagaagcc gacaagcgcg attacctgct gcattatatg ggcggtgcta       300
     ccttcgatgt gctctgcaac aagctgaaga atgctgaacc acaaacaaaa acgttcgacg       360
     agattgtgac tcttctgaag gagcatttca gtcctgcacc tttagaaatt ctggaaaatt       420
     tcaagttcgc gagtcgcaag cagctagagc acgaaacact gagcgattac ctgatggatt       480
     tggagaaact cgctcaaaca tgcaacttcg gtgatcatct ggacaaggcc atccggaatc       540
     aattcgtttt cggcatccgg aatcgtgtga tacagtcgcg gttactggaa attcgtgatt       600
     tgacgttggc gaaagcgaaa gaaattggat tcggaatgga gatgtctcac cgtggaaccg       660
     acgaaatgca tggctcccga tcgaaaaacg aggtgcagca tattgagcac ggagtcaaga       720
     aaacgaagaa gaagaaggca ttccagtcgt cgagtcaagt taattcccat catcagtcaa       780
     gcaagtcgga tggacggaag aagcagtgct ttcggtgtgg agatccggat cattttgcgg       840
     acaagtgcaa gcacaaatcg actgtctgca actgctgcaa gaagaaggga catctggaga       900
     aggtgtgcct gtcgaagaat aaggagaaga aggggacgga tgatgcacat cacttggagg       960
     agccctgcgt catcaaggac gttttccacc tgagcgcggt tcgtggtctt gctggtaagt      1020
     ttcttttgaa tctgacgatt aatcacagag agctgacatt cgaggtcgac accggatcgc      1080
     ccgtatccct tatcaatgta cgagacaaac gactctactt taacgacttg gacattatcc      1140
     ctacaactac acggcttgta agttactgcg ataatgatat cggtgtactc ggtaaagtga      1200
     tggtaaaagt tgttgctcat gatgaagagc tcacattgcc tctgcacatt gcagaatcta      1260
     gcaggcaccc cctgctgggt cgcgattggc tacttgcttt gaatttggat ttcaatcgcg      1320
     tattcagacc cggtacacat tcggtttctt actgtggcgg agcggatcaa tccaccgcta      1380
     gtgcgttgaa agatttactc aataaatttt cacatatttt cgatgaacgt gtaggtaaaa      1440
     tagagggggt acaagcttcg ctgaccgttc gtaaagatac aaagccagta tacgtgaagg      1500
     ccaggcctgt tgcatttgcg gtgcgtgatg cggtcgataa agagattgac cagttcgtga      1560
     gtgatggtat ctgggaaaag gtggaccatt cggagtgggc cactcctgtc gttccagtga      1620
     aaaaggctgg aggcagggta cgactgtgtg gtgattataa aatcaccctg aatccacatt      1680
     tgcttgtcga tgaccatcct cttcctacag ttgaagaact gtttgcaacc gttgcagggg      1740
     gggagacgtt ctctaagtta gatctctctc aagcctactt acaactcgag attcgtccgg      1800
     aagataggga cttactaacg atgagcaccc atcgaggtct gttccggcct accaggctta      1860
     tgtatggagt cgcttccgcc ccagctatat ttcagcgtct aatggagcaa attctccagg      1920
     gtatacccgg cgttactgtc tttattgatg atattcgcgt aacagggcct gattgcaaaa      1980
     cwcatttgct taggttggga gaagttttca agaggttgga taagtacaac ttacgtgtga      2040
     atcgagacaa atgtgacttt ttctctgatc gaatcgagta ttgcggttat atggtcgata      2100
     aggcgggtat tcacaagcta cgtaataaaa ttgatgcgat acaaaacatg ccggttccta      2160
     aaaataagga acaagtccgc tcgttcgtgg gactaattac atactacggt cggtttttcc      2220
     caaacctcag tacgattttg tatccgctaa ataacttgtt gaaggatgat gtaccgttta      2280
     tttggagtaa tgactgtgag aagtcgttct ctttcgttaa aaaggaaatg cagacagata      2340
     ggttcttagt tcactatgat ccgtcgttac cggtgatttt ggctaccgat gcctctccgt      2400
     atggcgttgg agcggtcctc agtcatcagt accctgacgg aactgagcga ccgttgcaat      2460
     atgcttcaca gactcttact cgaacgcagc aaagatattc acagatcgac aaggaggctt      2520
     attcgatagt tttcggtgtt cgtaagtttc accaatacct ctacgggcgt aggtttatcc      2580
     ttgtcactga caacaaaccc atcagtcaaa ttttctcaga atccaaagga ctccctacta      2640
     tgtctgcaat gcgtatgcag cattacgcgg catttttaca ggctttcgat tacaagattc      2700
     gtcatcgtcg ttcttcggat catttcaatg ccgacgccat gtctcgttta ccaacacctc      2760
     acactgaccc tgagtccgag atcgaagaac cagatgttgt tgaggtaaat gcaatagaaa      2820
     cgcttccgct tactgttgat gagttaggtt cagctaccct ttcagacgat agtgttcgcg      2880
     agttactacg tgccctaaga acgggtaagg cggtcgacgg taaatttcga tttggcgtag      2940
     atcaagaaca gttcactctg cagaaggatt gcatcatgcg aggaagtcga gtctacgtac      3000
     caccttcgct gcgaatgaag gttcttcgtg aacttcattc aacgcatttc ggtgtttcta      3060
     gaatcaaatc gcttgctcgt agctactgtt ggtgggaagg catagataag gatatcgaga      3120
     accttgtcaa ggattgcgct tcctgtcaag ctgctaaggc taatcctccg aaagtctcgt      3180
     tccattgttg ggaaacgcca tccgaaccgt tccaaagagt tcatgcggac tatgccggtc      3240
     ctttcatggg ttactactac ctaatcttga ttgacgcgtt ttccaaatgg cctgcggtct      3300
     atgtggttaa aaacatgact actgagacca caattcgtct gtgcagagaw tttttctgta      3360
     cctatggcct accttcggtt ttcgtgagtg acaatgggcc acagttcact tcaggtgatt      3420
     ttgccagatt cttgaagatg aatggcattg tccacaagct cagtgctccg tatcatcctg      3480
     ccacaaatgg ccaggcagag cggttcatac agacgatgaa atccaaactg aagtctttga      3540
     actgcaaccg ctctgaaata cacagtgaaa tctgcaatat tcttctgtcg tatcgtaaaa      3600
     tgcttcaccc tgccactgga ttctcccctg ctatgttagt tttcggtcgc cagatccgtt      3660
     caaggcttga tcttatgatt ccttcgaagg atccgaacag aagcgaagtt caatctaagg      3720
     taagagaatt aacagtgggt actaacgttg caattagaga atacgttcat gaaaataagt      3780
     gggaattcgg gatcgttaaa gaacggcttg gtaaactcca ttacttggta caacttaatg      3840
     acggacgggt ctggaaacgc cacattgacc aactgcgtag cgttggtgca ggtawatcga      3900
     gttcttcaac agaggcaact tctttgcgcg gcgaagagat cggttgtcaa gtttttcacg      3960
     acaacactac cgcagtgact tttgacttgc cgttaagtac gacgccggaa gaaaagattc      4020
     atgcttccgc tgacatgacc actgctccta tttcgaccgt tccgattcct tcaacgggca      4080
     tccaatcgcc aatttcgaat ggaatggcta aaactgggag atctgcagat tcagcgagct      4140
     tgccagcgga tcaaggattg cgacgatcac agcggacgat caaaccgcca cagaagctca      4200
     acttatagct agaacggagc ctatttcgtg gggaagagc                             4239
//
ID   Gypsy-326_AA-LTR repbase;    DNA;    INV; 246 BP.
XX
AC   .
XX
DT   12-DEC-2018 (Rel. 24.03, Created)
DT   12-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-326_;
KW   Gypsy-326_AA-I; Gypsy-326_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-246
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-246
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 407-407 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 246 BP; 68 A; 61 C; 46 G; 71 T; 0 other;
     tgttataact tcgtagcgat tctggcagca ctggagctgt caacggttca ctcgtgccaa        60
     cctaaacaac aacatccctt tccgctacga gatcgaccgc agtgaaatga ttaatttcca       120
     atcgacatcc gaacagtaaa gacggaataa agttaaaatt aatagttcgt gtgcgtcttt       180
     tttataactc ggttccgccg gtccattttc ggtttcccgg tagtttttcc gcccaaatac       240
     acaata                                                                  246
//
ID   Gypsy-327_AA-I repbase;    DNA;    INV; 4387 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-327_;
KW   Gypsy-327_AA-I; Gypsy-327_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4387
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4387
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 450-450 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..4321
FT                 /product="Gypsy-327_AA-I_1p"
FT                 /translation="MANPENAAAAVAVGVPPTFTFEPFDKSKTKWCRWVKR
FT                 LEGAMRLFGVNEEVKQSVLLHYMGSETYNILADNVSPDEPENQTYQQIVTV
FT                 LGSYYDPEPLEMVELWKFRSRAQMEGESIAEYITALQREAKYCKFGDYLQN
FT                 ALRNQLVFGLRNQRIRSRLIEERALTFDKAKEISLAMEASGEGAEVLNRKL
FT                 HELNLVDNATQHQRSPTNKVTNNTNKACYRCGSETHLANVCRHKETVCGYC
FT                 KKKGHLQRVCLSSNPESKWKKGDKKKLKTHLVEEGGDSCSDSGEEMIDEIC
FT                 VIDVCNCNVSHDNKPLSKIYIQLKVNDSRMRFEVDSGSPVSLVSATDKEKY
FT                 LPNLPLHESTIKLRSYCGSPITVHGTIDAQVVYKDNVETLRLFVVDSNRHP
FT                 LLGREWMRALQLNWNEIMANSVTSVDKIALRSPLSDSVKRIIEQFPSVFEN
FT                 SVGKMTRVQASLTLKPDSRPVFLKSRTIPFAIRDIVEREINEMVDNGVLVK
FT                 VNTSAWGTPVVPIMKSANKVRLCGDYKLTVNKHLLVDEHPLPTVDELFANM
FT                 AGGKKFSKLDLAQAYLQMSVRPEDQGILTLNTHLGLFQPTRLMYGVASAPA
FT                 IFQREISQILHGIPGVSVFLDDVKVTGPDDETHLKRLQEVLRRFAEHGMRV
FT                 NVSKCDFFADSIEYCGYVIDSEGIHKMKEKVSAIHQMPRPSNREQVRAFLG
FT                 LVNYYGRFLRDLSTRIYPINNLLKDKTPFVWDSDCERAFEWVKSEIQSDRV
FT                 LVHYDSNLPLVLAVDASPYGVGAVLSHMYPDGSERPIQYASQTLNPTQQKY
FT                 TQVDKEAYAIVYGVKKFHQYIFGRKFILVTDNKPVAQIFSPDKGLPTLSAL
FT                 RMQHYAVFLESFQFEVRYRSSKDHANADGMSRLPIPDRINTKRIEEVDVIE
FT                 LDQIRTLPVSVEELEENTRKDVSVRNLIHGLKTGRSVEGRDRFGVDQNEFS
FT                 LQSGCLMKGIRVYIPPPLRRRVLEELHSGHFGVSRMKSLARSYCWWDSIDR
FT                 DITELSRDCVNCARTRSDPPKVQIHCWERPVEPFQRIHVDFAGPFMGMYFL
FT                 IIVDAYSKWPEVKVIPDMSTDTTIDRMRDFFATFGLPTVLVTDRGTQFTSV
FT                 QFQEFLKKNGIIHKMGAPYHPATNGQAERYVQTFKDKIKALQCSRSEIQKE
FT                 LHNILMAYRRTIHPATGKSPSMMVFGRQLKSRIDLMIPKSNQDDKDYDHRG
FT                 EERVVRSFEVNDRVAARDFLSHSERWRFGVISERVGRLHYMIELDDGRLWK
FT                 RHIDQLRPGPVNPDSTSCFPLTRSTLRPSVPPLAPQECTSNSPKVSTDASR
FT                 SAESSNPVSSADQDISLGQRSVPSKTAQPHVQPISSPTISDSDLRRSSRMR
FT                 KAPNRLDL"
XX
SQ   Sequence 4387 BP; 1238 A; 904 C; 1081 G; 1164 T; 0 other;
     gttggcgacg atagaggaag aatccgcaaa gaaaatttcg gccgtttcca gccgattcgc        60
     ctagcgctac gttgtggggc cgatagtgaa gaggagagtt tgatccggga ttgaggttac       120
     gtgattgctg ttgctgttcg acgtgttgtt tgctgctgta tgctgatgtt ccgttattct       180
     ctgctgctgt gagttcttgg tgcgagcgat ggccaatcca gaaaatgctg ctgctgccgt       240
     tgctgtgggc gtaccaccga cgttcacttt cgagccgttc gataaatcaa aaacgaaatg       300
     gtgccgttgg gttaaacggc tggaaggtgc gatgcgactt tttggcgtta acgaggaggt       360
     gaaacaaagt gtacttctac attacatggg ctcggagacg tacaacatcc tggctgacaa       420
     tgtgtctcct gatgaaccgg aaaaccagac atatcaacaa atcgtcaccg tactcggcag       480
     ctactatgac ccggaaccgc tagagatggt cgaattgtgg aaattccgat ctcgtgctca       540
     aatggaagga gagtcgatag ctgaatacat tacggcactg caacgtgaag cgaaatactg       600
     caaattcggg gattatcttc agaacgcttt gcgcaaccag ctggtgtttg ggctccgtaa       660
     ccagcgtatc cgttctcgtc tcatcgagga aagagcattg acgttcgaca aggcgaagga       720
     gatctcactc gcgatggaag catccgggga aggtgctgag gttctcaaca ggaagttgca       780
     tgagcttaat ttggttgaca atgctaccca acatcagcga tcgcctacaa ataaggtaac       840
     taacaatact aacaaagcgt gttatcgttg tggaagtgag acgcatcttg caaatgtctg       900
     tcggcacaaa gaaacggtgt gtggatattg caaaaagaag ggacatttgc aacgtgtttg       960
     tctcagttca aatccggaga gcaaatggaa gaagggagat aagaagaaat tgaaaactca      1020
     tttagttgaa gaggggggtg attcatgttc tgattctgga gaagaaatga ttgatgaaat      1080
     ttgtgttatt gatgtttgta actgcaatgt gagtcatgat aataaaccat tgtcgaaaat      1140
     ctacatacaa ctcaaagtta atgactcacg aatgaggttt gaggtggata gcggttcacc      1200
     tgtgtcattg gtgagtgcta ctgacaagga gaagtacctt ccaaatctgc cacttcatga      1260
     gagtactatt aagttacgta gctattgtgg tagtccaata acagtacacg gtactattga      1320
     tgcgcaagtg gtgtacaagg acaatgtgga aactttacgg ctcttcgtag ttgattcaaa      1380
     tcggcatccg cttttgggaa gggaatggat gcgtgcatta caactaaatt ggaatgaaat      1440
     aatggcgaat tcggttactt ctgtcgataa aattgctctg cggtccccgt tgtctgattc      1500
     tgtgaagcgt attattgagc aatttccctc cgtgtttgaa aattctgttg gcaagatgac      1560
     aagagttcaa gcgagtctta ctctcaagcc tgattctaga ccagtgttct tgaagtctcg      1620
     cacaatacct ttcgctattc gtgatattgt tgaacgggaa atcaacgaaa tggtggataa      1680
     tggggttttg gtaaaggtga ataccagtgc atggggcact ccagttgtgc cgattatgaa      1740
     atctgctaat aaggtccgac tctgtggaga ttataaattg actgtaaata agcatttatt      1800
     ggtcgacgag catccgttac ctacagtaga cgagcttttt gcgaacatgg ccggtgggaa      1860
     gaaattctct aaattggatt tagcgcaggc ctacttgcag atgagtgtac gacctgaaga      1920
     tcaaggaata cttacgttga atacgcacct tgggttattt caacctacta gacttatgta      1980
     tggtgttgcc tctgcacccg ccatattcca gagagaaatt tcacaaattc ttcatggaat      2040
     acctggagta tctgtcttct tggatgatgt caaggtcaca gggccggatg atgagactca      2100
     tctcaagcga ttacaagaag ttttgaggag gtttgcagaa cacggcatgc gagtaaatgt      2160
     ttccaaatgt gattttttcg cggacagtat tgaatactgc ggttatgtga ttgattctga      2220
     aggtatccac aagatgaagg agaaagtttc cgctatacat caaatgccta gaccgagtaa      2280
     tcgcgagcag gttagagcgt tcttaggcct tgtcaattac tacgggagat ttctacgtga      2340
     cctcagtact agaatctacc caatcaacaa cctcttgaaa gataaaactc cttttgtatg      2400
     ggactccgac tgtgagagag cctttgagtg ggtcaaatct gagatacagt ctgatcgcgt      2460
     attggttcat tatgactcga acttacctct agtgcttgcc gttgatgcct caccctacgg      2520
     cgtgggagct gtgcttagcc acatgtaccc ggatggaagt gaacgcccga tacaatacgc      2580
     atcgcagacg ttgaatccta ctcagcaaaa atacacccag gtagacaaag aagcatatgc      2640
     tattgtctac ggcgttaaga aatttcatca gtatatattc ggaaggaaat tcatcctcgt      2700
     cacggataat aaacctgtag cgcaaatctt ttcgccggat aagggattac ccacactttc      2760
     cgccttacgt atgcaacact acgctgtctt tctggagtct ttccaattcg aggttcgata      2820
     ccggtcttcc aaagatcacg ccaatgcaga cggaatgtcc cgattaccga ttcccgatag      2880
     aatcaacacg aaacgtatcg aagaagttga cgttatcgaa ctggaccaaa ttcgaacact      2940
     acccgtgtcc gtagaagagc tggaagaaaa taccaggaaa gatgtttccg tccgtaactt      3000
     gatacatggt ttgaaaaccg ggagatcagt agaggggcgt gaccgtttcg gagttgacca      3060
     aaatgaattc agcttgcaaa gtggatgttt aatgaaggga attagagtct atatccctcc      3120
     acctctacgt cgcagggttt tggaagagct gcattccgga catttcgggg tttcccgaat      3180
     gaaatctctc gcaagatcgt attgctggtg ggattcgata gatagggaca tcacagagct      3240
     atcgcgcgat tgtgtcaact gtgctagaac cagaagtgat cctccaaagg tacaaataca      3300
     ttgttgggag cgaccggtag agccattcca gcgtattcat gtcgactttg cggggccgtt      3360
     tatgggaatg tattttctca taattgtgga tgcgtatagt aaatggcctg aggttaaggt      3420
     gattcctgat atgtcaactg ataccactat agatcggatg cgtgactttt tcgctacgtt      3480
     tggattgcca acagtattgg ttacagatcg tgggactcag ttcacctcgg tacaatttca      3540
     agagtttttg aagaaaaacg gtatcatcca caaaatggga gctccttatc atccggccac      3600
     aaacggccag gccgaacgct atgtacaaac cttcaaggac aaaataaagg ccctacagtg      3660
     ttcacggtca gaaatccaaa aggagttgca caatatactt atggcctaca gaagaacaat      3720
     tcatcccgct actggaaaga gtccttcaat gatggtattc ggaaggcaat taaaatctcg      3780
     cattgaccta atgattccaa aaagtaacca agacgacaag gattacgatc ataggggaga      3840
     agagagggta gttcgctcgt ttgaagttaa cgacagggta gccgccagag actttctttc      3900
     gcattctgag agatggaggt tcggtgtaat ttcagagaga gtcgggaggt tgcattatat      3960
     gatcgagctg gatgatggta ggttgtggaa gcggcacatt gatcaactca ggccagggcc      4020
     tgtaaatcca gattctacat cgtgttttcc cttgactcgg agtactcttc ggccatctgt      4080
     tcctccactt gcgcctcaag aatgcacatc taactcacca aaagtctcta ctgacgctag      4140
     ccgatccgca gagtcgtcca accctgtcag tagcgctgat caagacattt ctctaggtca      4200
     aagatcggtg ccatccaaaa ccgcacaacc tcatgtacaa ccaatcagtt caccaacgat      4260
     cagtgacagt gacctgagaa ggtcttctag aatgaggaag gcaccgaatc gtctagacct      4320
     ctaaatttgt gttcactaac atactaacat tttatgtagt acgcaatcat tgctagggag      4380
     gaagaaa                                                                4387
//
ID   Gypsy-327_AA-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-327_;
KW   Gypsy-327_AA-I; Gypsy-327_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-171
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-171
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 408-408 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 171 BP; 52 A; 43 C; 21 G; 55 T; 0 other;
     tgttataata tgctaccttg tattgatcat ccttgctttt ctatcaccag tcctccaaga        60
     tcatatgtca ttgattccat gtaagcaaca agtcaagaat aaactgtcat tcctttgtaa       120
     tcgttactag caaccgcacg catttctctc gaccatccga aaaatacaac a                171
//
ID   Gypsy-328_AA-I repbase;    DNA;    INV; 5338 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-328_;
KW   Gypsy-328_AA-I; Gypsy-328_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5338
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5338
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 451-451 (2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           950..5215
FT                 /product="Gypsy-328_AA-I_1p"
FT                 /translation="MSSSVAFSLEPYRRGTSFNDWFTRMKYFFRVNKINEE
FT                 DKMAYFITMSGPVIFAEIKLLYPTGNFEEAALDDIVSKLKNRLDKTEPDLV
FT                 QRYKFSTRVQNPDESVEDFILNLKLQAEFCGFENFKEVAILDRLIAGLCDK
FT                 KLRQRLLSEEKLTLANAEKLIATWEVARANAGTTDQSHIGHPSMVAAVLNR
FT                 PNEIQGIAASRIAQVYNLSRKYQGFGNGVKDSSNRGPVKSRLGFKSPGKIE
FT                 QSYRGRRGGETGSFPQDGRSGGHRQWQRPDYSQMVCNFCGIRGHIRKKCFK
FT                 LKNLNRDAVNLVDSYRPGPSADRHITELLERMRTKDDDDDENSDEGNLQCM
FT                 YVSSINKISNPCLVQVDIEGKGLEMEVDCGASVSVISKRRYVSKFDNPLRN
FT                 YNEPLMVVNGNKLKIEGEATVSVKFNGKEALMQLLVLDCENDFYPLFGRTW
FT                 LDMFYSNWRQFFTNSWQINNIVNNSGESAIDELKNRYGNVFIKNFSTPIKG
FT                 FKAELVMRDETPIFKKAYDVPYRLKDKVSAYLDKLAKEQVITPIDTSEWAS
FT                 PIIIVMKKNGEIRLVIDCKVSINKAIVPNTYPLPTSQDIFANLAGCRVFCA
FT                 LDLEGAYTQLELTERSKKFVVINTMKGLYKYNRLPQGASSSASIFQQVMDK
FT                 ILEGIENVSCYLDDVLIAGKTAEECKNKLLLVLERLANANIKVNFEKCKFF
FT                 VTELTHLGHIISDKGLRPCPDKISTIEKANAPKNESELKSFLGLLNYYHKF
FT                 IPNLSSKLYPLYNLLKNNVKYVWDDKCQKAFLESKNLLIDTNFLEFYDPKK
FT                 PIVVISDASSYGLGGLIAHVVDETEKPISFTSFSLNSAQKKYPILHLEALA
FT                 LVCTIKKFHKFLYGQHFIVYTDHKPLVGIFGKEGRNSIYVTRLQRFVLDLA
FT                 IYDFDIIYRPSHKLGNADFCSRFPLKQDVPEDLDTDVIKSINFSKEIPIDS
FT                 KLIADATKEDEFLQKVIFFMLNGWPERVEKQFTDVFSNYLDLELVDDCLLF
FT                 MDRVVVPRIFHAKILRQLHANHSGVIKMKQLARNAVYWFGINTDIEKHVAE
FT                 CDACNSMTITHKSKESSQWTPTTRPFSRIHIDFFFFEHRTYLLIVDSFSKW
FT                 IEIELMTHGTDCNRVLKKLVAYFARFGLPDVLVSDNGPPFNSRNFVDFLER
FT                 QGIKVMKSPPYNPASNGQAERLVRTVKEVLKRFLMDPEISGLDLEDQINLF
FT                 LFNFRNNNLTKDGHFPSERIFSYKPKTVLDLIDPRNHYKKHLNVPPPHDDV
FT                 NTKHRSGNIPKNTEDIDNLMEGDDVWYKNHNPHNQVRWIKATFIKKYSRNT
FT                 FQICIGSVVTMAHRTQIRPCKPSATWQRPNVWITRAQSSKETSMAPPADYP
FT                 PAGDELPSSNDPPIGEENQQQAPRGRNKRRRLESGSNQIEPRRSKRTKKVN
FT                 RSDDFYYN"
XX
SQ   Sequence 5338 BP; 1719 A; 881 C; 1138 G; 1600 T; 0 other;
     gtgtcgacga gaaaaaggtg tttgaacgcg tgaaattgga gttagttttt ttttttttaa        60
     ttggactcgg acaagcgcca gcaacagaat tggatcagcg tcaccggagc ggtggattcg       120
     atcagggtga acgacgtatc ggtgaagttt ttttttctga tagctttgca gtggttgctg       180
     acggtaaatt tgtaagtaaa acattgaaag tgtttcgaaa gtgctgaaat ttatagagaa       240
     aagcggatca gcatagcgcc attcgccatt tggttttggt ggcgtcgttt tattgtgttt       300
     tttttatttt gggctggcaa caatagggtg gtccaaaaac aataatttgt ttttcagatt       360
     caatttaatt gttattcagc attgttgtat cgcatataca atagcattat taattctgta       420
     ttctttcttt atattgaaca ataggattct ttacacagct attgtggagt cttgaaaacc       480
     gccaaattgt aagcagtagc aaaattcaac ggaattgctt tcgccgatac ggatttggaa       540
     gcagtgagga aatctgccgg cgggactgat ccgtagccgt ttgtgaatcc gtaaacagga       600
     aaggtttttc ggtaataggg tgagtccttc tgtttttttt attattgttt tgcacgaata       660
     gtgaagtgaa aaagtgtttt acttctgttt aatttgtatg aaagtctaat agctttgatt       720
     tctcattttt atcttccttt ttggtttaat tccaaacatt ttattatatt tttcattatt       780
     caactgtttt atttatttta cataatattg atgccatatg aatttatcat ttaattaatt       840
     tatttgccta ttgcttgaaa attattatcg aatcaatttg tttgctgatt gttcaaattg       900
     tgttttatat atttttcgtg tgaaattttt aattttgttc tattagacaa tgagctctag       960
     cgtggcattt tctctcgaac cctaccgtag gggtacatca tttaatgatt ggtttacccg      1020
     gatgaaatat ttcttccggg tgaacaaaat taatgaagaa gacaaaatgg catacttcat      1080
     cacaatgagt ggcccagtta tattcgctga aattaaacta ttgtacccta cgggtaattt      1140
     tgaagaagca gcgttggatg atattgtctc aaaactcaaa aatcgcctag acaaaacgga      1200
     accggattta gtacaaaggt ataaattcag tactagggtc caaaatcctg atgaaagtgt      1260
     cgaggatttt attttgaatt taaagcttca ggctgaattt tgcggttttg aaaattttaa      1320
     agaagttgct attcttgacc gccttatcgc tggattatgc gacaagaaat tgagacaaag      1380
     acttttgagt gaagaaaagt tgactttggc aaatgctgaa aagttgattg caacatggga      1440
     ggtagcgagg gctaatgctg gaacaactga ccaatcacat atagggcatc caagtatggt      1500
     ggctgcggta cttaataggc caaatgagat acagggaata gcggcgtcta ggatagctca      1560
     agtttataat ttatcaagga aatatcaagg ttttgggaat ggggttaaag acagcagcaa      1620
     tagaggaccg gttaaaagtc gattaggttt caaatctcca gggaagatag agcaatcata      1680
     tagaggaaga cgtggaggtg aaactggcag tttcccacaa gatggacgtt ctggaggaca      1740
     ccggcaatgg cagcgacccg actattccca aatggtatgc aatttttgcg gaatcagagg      1800
     ccacatccgt aaaaaatgct ttaaattgaa aaacttgaat cgtgacgcag taaaccttgt      1860
     cgactcgtat aggccaggac cgtcagcgga taggcatatt actgagctgc tggagcgaat      1920
     gcgaaccaaa gacgacgatg atgacgagaa tagtgacgaa ggtaatctac aatgtatgta      1980
     tgtgtcatcc atcaataaga ttagcaatcc atgtttagtg caagtagata ttgaaggcaa      2040
     gggcctagaa atggaggttg actgtggcgc gtctgtgtca gtcataagca aaaggcgata      2100
     tgtttcgaag ttcgacaacc ctttacgaaa ttataacgag ccattaatgg tagtgaatgg      2160
     aaacaaactt aaaattgaag gggaggctac agtttcagta aaatttaatg gcaaagaagc      2220
     gctaatgcaa cttttagtac ttgattgtga aaatgatttt tacccgcttt ttggccgaac      2280
     ttggctagac atgttttact caaattggag acagttcttc actaattctt ggcaaattaa      2340
     caacatagtt aacaactcag gtgaatcggc cattgatgaa ctaaaaaata gatacggaaa      2400
     tgtttttata aaaaactttt cgacacctat aaagggattc aaagcagagc ttgtaatgcg      2460
     ggatgaaact ccgatattta agaaggctta tgacgttccc tatagattaa aggacaaagt      2520
     ttcagcgtat ttagacaaat tagcgaaaga acaggtcatt acgccaattg atactagtga      2580
     atgggcttca ccaatcataa tcgtgatgaa gaaaaatgga gaaatcagat tggtaataga      2640
     ttgcaaagtt tcgattaata aagccattgt accgaatact tatcctttgc ctacttctca      2700
     agatattttt gctaacttgg caggttgtag agtattttgc gcgcttgact tagaaggtgc      2760
     atacacacaa ttagaattga cggaaaggtc caagaaattt gtggtgatta atacgatgaa      2820
     agggttatat aagtataata ggctacctca aggtgcatct tcaagcgctt ctatttttca      2880
     acaggtaatg gataagattc tagaagggat tgaaaacgta tcatgctacc ttgatgatgt      2940
     cttgatagct ggaaagaccg cagaggaatg taaaaataag cttttgttgg tattggaacg      3000
     tttagcaaat gcaaacataa aagtaaattt tgaaaaatgc aaattttttg ttacggagct      3060
     tacacatttg ggacatatta ttagcgataa agggcttagg ccttgtccgg acaaaatatc      3120
     aacgatagag aaggcaaatg ccccgaaaaa cgagtcagaa cttaaatcat ttcttggatt      3180
     gttgaattac tatcacaaat tcataccaaa tttatcctcg aaactgtacc ctttgtacaa      3240
     tttgctgaag aataatgtga agtatgtttg ggatgacaaa tgtcaaaagg catttttgga      3300
     aagcaaaaat ttgctgattg acacaaactt tttagaattc tatgacccta agaaacccat      3360
     tgtagtaata tcagatgcct ctagctacgg tcttggaggg ttaattgctc atgtggtaga      3420
     tgagacagaa aaaccaataa gttttacatc cttctcgctg aattcagccc aaaagaaata      3480
     tcccatttta catttagagg ctttagcatt agtatgcacc ataaagaaat ttcacaaatt      3540
     tctttatggt caacatttca ttgtttatac agatcacaaa cccttggtgg gaattttcgg      3600
     aaaagagggt agaaattcaa tttatgtgac aagactgcaa cgctttgttt tggatttagc      3660
     gatttacgat tttgacatta tttataggcc ctcacacaaa ttagggaatg cagatttctg      3720
     ttcgagattt cctttgaaac aggatgttcc cgaagatttg gacacagacg ttataaaaag      3780
     cataaacttc agcaaagaaa ttccaatcga ttccaaatta atcgctgacg ctacaaaaga      3840
     ggatgaattc cttcaaaaag tgatattttt tatgcttaat ggctggccag aaagagtgga      3900
     aaagcaattc acagacgttt tttcaaatta tttagattta gagttagtgg acgattgtct      3960
     tctttttatg gacagagtag ttgtcccgag gatattccat gccaaaattt tgaggcagtt      4020
     acatgcaaat cactctggtg tgattaaaat gaagcagtta gcaaggaatg ctgtgtattg      4080
     gttcggtata aataccgaca tagaaaaaca tgtggctgaa tgcgatgcat gtaatagcat      4140
     gacaataact cataaatcta aggaatcgtc ccaatggact ccaacaacgc ggcccttcag      4200
     tagaatccac attgattttt tcttttttga acatcgcacc taccttttga ttgtggatag      4260
     cttttccaaa tggattgaaa ttgaattgat gacccatggt acggattgca acagagtttt      4320
     aaagaaattg gtcgcctatt tcgcacgttt tggtttacca gatgttttgg tttcggacaa      4380
     tggtcctcct ttcaactccc gaaactttgt tgacttctta gagaggcaag ggataaaagt      4440
     aatgaaaagc ccaccgtata atcccgccag taacggtcag gctgaaagat tggttagaac      4500
     tgtgaaagaa gtcctcaaga gattcctaat ggatcctgaa atttcgggtt tagacttgga      4560
     agaccagata aatttgtttc tgtttaattt tagaaacaat aatttgacaa aagatggaca      4620
     ttttccatcg gagaggatat tttcatataa accaaaaact gttttagatt taatagatcc      4680
     aagaaatcat tacaagaaac atcttaacgt accaccccca catgatgatg ttaacactaa      4740
     acatcgtagc ggaaatattc cgaaaaatac agaagatatt gacaatctga tggaagggga      4800
     tgacgtgtgg tacaagaacc acaaccccca caatcaagtt agatggatta aggcaacttt      4860
     tattaaaaag tattctcgca atacgtttca gatatgcatt ggaagcgtgg tcaccatggc      4920
     acacaggacg cagatacgac catgtaagcc gtctgcaacg tggcaaaggc cgaacgtttg      4980
     gattacgaga gcgcagtcaa gtaaggaaac ctcgatggcg ccccctgctg actacccgcc      5040
     agccggcgat gaactaccct ccagtaacga tccgcctatt ggcgaagaaa atcagcagca      5100
     ggctccgagg ggacgcaaca agagaagacg cctggaatca ggttccaacc agatagagcc      5160
     ccggagatcc aaacggacga agaaagttaa tcgcagtgac gatttttact ataactgaat      5220
     tttgcgagct tgataaaaaa agttttcgat caaccaaatt tgaattcgtg attatgatat      5280
     tattgtaatg aattgtttca cgttctgata agtttaaact atgtaaaagg gggagaat        5338
//
ID   Gypsy-328_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-328_;
KW   Gypsy-328_AA-I; Gypsy-328_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 409-409 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 227 BP; 59 A; 59 C; 42 G; 67 T; 0 other;
     tgatgtattt ttcctacgca cccctagtgc gttctaatgt cagttgacgg tcgtccctcc        60
     gacgatcgta tacgaacgaa tcgaagtagc cgaagggctc tgatcattag taaataaaca       120
     agacagcttc agtcttatct gaactaccag cctaaccaga tcgcttttac ttcatcagtc       180
     tcttaataca agttcacttt tcctccgccg gtctcgggaa ttgtaaa                     227
//
ID   Gypsy-329_AA-I repbase;    DNA;    INV; 4263 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-329_;
KW   Gypsy-329_AA-I; Gypsy-329_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4263
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4263
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (13-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4263 BP; 1336 A; 924 C; 1009 G; 994 T; 0 other;
     tggtgtcaga agtaatcgcg gcataaagtt cggaataaaa ataaacgttt ggaatcgtcg        60
     gacatcgtat aatccgaggt cgcgtttaaa gttgcgttta gaaagcgatt caaactttcg       120
     tcgtgtatca agccaacatg gaagaactgg caaaaatatt ggagaaccaa accaaacttt       180
     tcgagaagct gcttcatcag cagcgtgagc cccaagcagt agcagccacc gctcaaaatg       240
     tcccgcttcc tccgccatta tgtttggaag gggacatgga tgaaaacttt tcgtttttca       300
     aggataattg gaagaattat tgtacagcgg tcggcatgga tgcatggccg gatacggaaa       360
     atgcgaaaaa catggcccgg ttgaagacac tagcaaagcc agcgaaattt ggaggtctgg       420
     aagcggaaat gatcacctac aagcttgcaa cctcaaacaa gtggccacat ctccgaacga       480
     aaatgctaac gatggcggat ctcacttcgg gaaaggcaat agatctgtgt cgtgtggagg       540
     aaattactgc taaacatgtc cagacacttt cgtcggacaa aatggtggaa gttaatagac       600
     taaaagcagc atcatcgaag gcacgtttgt gtaagttttg tggagattgg catgcattca       660
     caaagggatc gtgcccagca ttcggtaaaa agtgcaaatt atgcgccggc aagaaccact       720
     ttgagaaagt ttgccggaag aacacatccg gatcatcgaa acgaagccgt acacgcagaa       780
     tcaagaagat aaatgacgac acttctgatg acagcgatcc agaggatgaa tatagcgagc       840
     agtcagaaga atccgaaatc gaaggggaaa ttggcaagat ttttgacaac tcgaagaaag       900
     gaggacacgt gctggcggaa atatcactga agctaaacaa caagtggaaa agtgtgaaat       960
     gtgagctaga tacgggagct aatactagct tgattgggta cgattggttg tgcaagctaa      1020
     ctggagagcg cgatccggaa ctgctcccgt caccatacaa gcttcaagct ttcggaggtg      1080
     gaataattaa cgttttgggt caagtgaaaa taccgtgcaa gtgtaaatcc aagaaatatc      1140
     tgcttgtgct ccaggtcgtg gacgttagcc ataggccgtt gttgtccttg aaggtgtgta      1200
     caacgtttgg cctgatcaag ttttgtaacg ccgtcagtat ggtaccggcc gaatcatcgt      1260
     catcagcgga tgtattgaga atatatcgca ttgaagcaga aaagattgtg gagaaattca      1320
     gcgacgtttt ccaaggatat ggcaaaatgg aaggcgaagt cggtttggag atcgacgaaa      1380
     gcgtaactcc ggtaatacaa cagcctcgcc gggtccccat cgctcttcgt cccaagctga      1440
     aggctgaact ggatcaactt caaaaagacg gaatcatcac gaaacaacac aatcacacag      1500
     agtgggtgag taatattctc attgttaaac gtggtactgc agggtccgag tccattcgca      1560
     tttgtttgga ccctattccg ttaaacaagg ctttgaaaag acccaatctt caattcgtta      1620
     ccttggatga aattttgccg gagttgggtc aagctaaggt tttctctacc gtggatgcac      1680
     gcaaaggatt ctggcacgtg ctagacgagc caagcagcaa actgacgtca ttctggactc      1740
     cctttggccg atatcgttgg ctgaggcttc ctttcggcat ttcatcagct cctgaaatat      1800
     tccaatctaa actacaggaa gtcatccaag gtttgaatgg agtggaatgt ctggcggacg      1860
     atcttctgat ctatggtcgc ggggcaactg tcgaagaagc tcttcgggat cataatgcta      1920
     acttggaaaa gctacttgaa cgtctaaagc aaaacaacgt gaaactcaac aaggcgaaaa      1980
     tgaaactctg tgagacatct gtgaaattct ttggtcatgt tctctcaacc gaggggttaa      2040
     agccagatga caccaagatt tcgtcaataa aaaactatcc agtcccagca aacagaactg      2100
     aattgcatcg gttcattggg atggttacat atctgagtcg tttcgttccc aatttaagtg      2160
     cgtcgtttac caagctacgt cggttgattt cagaaaagga gccatggcaa tggaaccagg      2220
     aggaagatga tgaattcgct cgagtcaagt cacttgtgtc cgatataacc acgcttcagt      2280
     attacaacgt taatgaaccg ctgacgatcg aatgcgacgc gagttgtttt ggactaggag      2340
     tggcattgtt tcaaaagaat ggtgtcgtag gatatgcatc ccgaacgctg accgatacgg      2400
     aaagaaacta cgcacaaatc gagaaagaat tgctcgcaat tttgttcgca tgcgtgcgtt      2460
     ttgaccaact ggtcgttggg aacccctgtg tgaccgttaa aaccgatcac aaaccattga      2520
     taaatatttt caacaagccc cttctaactg ctccgaagag attgcaacac atgctgttga      2580
     atctacaaag gtaccaactg aagctggaat ttgtcaccgg aaaggaaaac gtagtagcag      2640
     atgcaatatc ccgtgcacct catgatgatt caaccgagca caatgaatat tgcaagcaga      2700
     acatctataa gatcttccaa cgtttggagg attgcaatgt aagcaattac ttggctatat      2760
     cagacagttg tttgaatagc atcatgaaag ccaccgaaca agatgaatca ttacaaactg      2820
     caattgacta cattcgaaac ggctggccca gcaacatcga gcgagtacca gcagcagtaa      2880
     aaatcttctt caaatatcgg aacgaattat caacacaaga tgggctcgta ttaaggaacg      2940
     atcggattct catcccaagt gcactacagc ggtccatgat tgacagagta catgtgagtc      3000
     acaacggcat tgaatcaact ttgaaactcg caagagaaaa catcttctgg ccaggtatga      3060
     gcgcgcaaat tatggatgtg gtaaaagaat gtactgtttg tgcaaagtac gctccttccc      3120
     agcagaaacc tccaatgcaa agccatgcta tacccgtcta tccatggcaa attgtctcga      3180
     tggatgtatt ttttgcaaca taccgtggca ggaagcatca attcctcgta acagtagacc      3240
     attactcaga ctacattgag ctagacattc taaaagacat gtctgccaaa agcctatccg      3300
     agacttgtaa aagaaatttt tcccgacacg gtattccgca aatcatagtc accgacaatg      3360
     gaactaattt cgtgaacgat gagatgaagg acatggcaat caaatggaac ttcaagcatt      3420
     cgacgtcttc tcctcaccat cagcaaggca acggcaaggc agaagcagct gtgaagattg      3480
     ctaaacgatt gctccagaag gcagacgaaa ccggacagga catttggtat gtcttactcc      3540
     attggcgaaa tatccccaac aagatcggta gcagccccgt aagcagactc ttttcacgaa      3600
     gcacaagatg tggtgtgcca gcttcgtttg aaaaatatag tcctcgaaca gtgcagaacg      3660
     ttcctgaaac gatcctggaa agcaagaaaa aagtgaaata ttactacgat cgcaaatctc      3720
     gagatttgcc cgcaccgcaa actggctcgc cggtttacgt gcaagttcac ccggatagca      3780
     ataaaacttg gacgccagca gtcatccgag aaaagctgaa tgaacgttcg tatctggttg      3840
     acgtggatgg ttcctgttac cggagagatc tggtaaacat taggccgcgc aaagaaccag      3900
     caacaagccc gctcgtctcg gttcccgatg gttcacggta tgacagcaac aacactacac      3960
     ctttttctcc actttgcatc gactcgacag gtaaaccaga taaacagcaa ccagcgccta      4020
     ctgtgatggc aagtaatgca gagacaacag cgacgacgtc cgtcgtcagg gagacagctg      4080
     ctgatatgat tgataacgcg gacgcgtcga aagcgtcgcg tcgtacggat agccgaagcg      4140
     ttagcaacac gctaaacaaa agcaccacaa atgtgaagga tagaccgaaa cgtgaaaaaa      4200
     agttaccaag taaatttcat gactttgtaa tggaaaatta acttttatta aaagaaggga      4260
     gga                                                                    4263
//
ID   Gypsy-329_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   13-DEC-2018 (Rel. 24.03, Created)
DT   13-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-329_;
KW   Gypsy-329_AA-I; Gypsy-329_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-173
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 410-410 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 173 BP; 47 A; 39 C; 24 G; 63 T; 0 other;
     tgttatatta tttgatgtca agtgtaaatg tgccttacat ccttcacatg cttcataccc        60
     ttcacacctt tcatatagtt atcttgactt ccgctgtaga tgattcagtt gaataaagct       120
     ctttgtaacg aacagacaca ccgagtattt ttctctgtac catatccgta aca              173
//
ID   Gypsy-32_AA-I repbase;    DNA;    INV; 6824 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_AA_;
KW   Gypsy-32_AA-LTR; Gypsy-32_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6824
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions  633237  640060.
XX
CC   Positions [5139-5603] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           425..2902
FT                 /product="Gypsy-32_AA-I_2p"
FT                 /translation="MTMDFEKAYLEDMVTTFLTEEELKFELEIRNLIDNRD
FT                 RSITVNRRKLKNALREESEGVQRVYLYHRRPREELNICQRRLERVRSEIVL
FT                 DDVLKDTSKTGLLHLYNRLKLFKKTYATRDYINEANWIFSNVVQMYLANFA
FT                 ERVFLPTPPGSPNLVQLEGAASHEAQAATAGDFISLGHPVATSIEISLPAS
FT                 IFQSQSVQTVADLFSSVSINPASDITSRAGDDGQSIVSATLGAVPRVRNRD
FT                 ESVSISMSFPTVVTSSSTFTSVSSLGSMPPIWSTPRYRVSTSVQQSRQVRF
FT                 DSARSFADLPVSYVASEPCSSVASVIPTSVGTGDAVYSQSRSFVHFPEATA
FT                 NLDRNRHLPQSVRYTDGPHPTSHWSDPWQVTSNPFSNYRNSLNFPPPNPNI
FT                 PFDFPVSVQGGNPVSYSHFGSFVSQGNYVPINSYASQHPFEMAPGNATPAR
FT                 PPTQPNVIGGSRIPTSDWLGGSFRAPTAPAPSINPFEDFDFDPLQNRVKTV
FT                 PVVKWPMKYAGEDRGMGLNDFLWEVSDWTKSEQISENELLRSFGNLLTGRA
FT                 KMWFTSNKHRFATYSELIENLKLTFRHPDLDHFVLMDIYQKRQQKNETFLE
FT                 FFLDVEKKFKSLTVQIPEIEIVQAVKRNLRPKYKRALIGRELHDLYSLQIA
FT                 GQEIDATNTYLFVKPQAPSQSHAVQVAENRGGTNSNQSRDNRPKFGGKWQA
FT                 NNPKFIPRSNQNQVGPGGKQMNPKEPDSGPQQPKKNGKPKPDEKPCPPSDE
FT                 SEASHAEGKIQDFVPLNDKFICFNCRSQEQLTYQCTRPYKVHCQVCGFKGY
FT                 PTHRCPFCAKNSARRRESGQPKSN"
FT   CDS           2779..4803
FT                 /product="Gypsy-32_AA-I_1p"
FT                 /translation="MYSALQGSLSGLRLQRVSHSPMPLLCKKLCAPEGVRP
FT                 TEKQLSDVTDILFALGYEPRLNSVNLSKSDINQTSVLSVLTDNRPFIDVSI
FT                 FGRTIKALLDSGSQKTLLSNTTSPIWRVNNTKVFQSNLNLTSASGDPLQVS
FT                 GRVYLPFTVQGKSRVIEATIVDDLPVECIAGIDFFDAFDVHISMDNAYLFQ
FT                 INTEECTTSSPELVELSSEQDREINRVKRLFKPAMSDQLEVTSLVQHTIEL
FT                 KDEFKSAAPIRLTPFPYSPAIHRALNEEIDRLLALGIIEESNSDWALNAVP
FT                 IKKPNGSIRLCLDARKLNARTKRDAYPLAHVGRILGRLGKTRYLSTIDLKD
FT                 AFLQIPLSPESKPLTAFCVQGRGMFQYTRLPFGLTNSPATLSRLMDKILGA
FT                 GAVEPQIFVYLDDIIVASETFEEHIRLLEELASRLRKANLSINIQKSQFCH
FT                 SEVPFLGYLLSNEGLKPDPSKVQAILDFEAPKTVRQIRRFLGMVNYYRRFI
FT                 GDFSTITAPISDLLAGKPKVVRWTEAAEQAFRTIKERLITAPILSNPDFDK
FT                 EFTVQTDASDRAVAGVLTQLQDGSERVISFFSQKLNSAQQNYSATEKEALA
FT                 ALLAIDKFRGYIEGSHFTLITDASALQYIRNNKWRPSSRLSRWSLDLQHLD
FT                 MTIVHRRGSDNIVPDALSTPRLPTRN"
XX
SQ   Sequence 6824 BP; 1972 A; 1522 C; 1535 G; 1795 T; 0 other;
     ttctggcgat ccaacgaaaa aacattgctt gtgagagtta ttttttttta ttggtcgttg        60
     ggggagttta gaggtgttcg actggagaag ataaaaaaaa tcaactctcc aaccgaaaag       120
     ttaaattggg ttcgcacagt ttctttttcg ttgcgagtgc tacgttccac acactgctga       180
     tagatcaata ggcattgttc cagatctggc gcgtgctcag ttagatagcc aaatttgttt       240
     ttctgcacgt tgcggattgt atcactttag aataaccaat tttgtttttg caagccgagc       300
     caaaattcct aggttttttt caattccgtt ttgcatgcct tttgcatgtg ttttttttgt       360
     tgtagataga gatacgcaat cgagagtcca cataataaat tttgcttgag aatacggcag       420
     agagatgacg atggattttg aaaaagccta cctagaggat atggtaacta cattcctcac       480
     tgaagaagag ctcaaatttg agctggaaat cagaaacttg attgataata gagatcgctc       540
     gatcacggtc aatcgtcgaa aattgaaaaa tgcgttgcgt gaggaatcag agggggtaca       600
     gcgtgtatat ttgtaccacc gtagaccgag ggaagaattg aatatatgcc aacgcagatt       660
     agagagggtg cgatccgaaa tcgtactaga tgatgtcttg aaagacacat ctaagacagg       720
     attactgcat ctgtacaatc gtcttaaatt gtttaaaaaa acgtacgcta cccgtgacta       780
     cataaacgag gcaaactgga ttttttcaaa tgtagtccaa atgtatttgg ccaatttcgc       840
     cgagcgagta tttttaccaa ctccgcctgg ctctcccaat ttggtgcaat tagagggtgc       900
     tgccagtcat gaggctcaag cggctacagc aggtgatttc ataagcttag ggcatccagt       960
     tgctacgagc attgaaattt cgttaccggc gagtatcttt caaagtcaat cggtgcaaac      1020
     ggtagctgat ctgttttcca gtgtatcgat taatccagct agtgatataa catcgcgtgc      1080
     gggtgatgat ggacaatcga tagtgtccgc aaccctagga gcagttccgc gagtgcgtaa      1140
     ccgtgatgag tcagtgtcga tatcaatgag ttttcccacg gtagtgacgt catcgagtac      1200
     gttcaccagt gtttcttcat taggatcgat gcctcccatc tggtccactc cgcgataccg      1260
     agtttctacg agtgtgcagc aatctcgaca agtgcgtttc gattcggcgc gatcgtttgc      1320
     agatttgcca gtgagttatg ttgcatcaga accgtgttca agtgtagcgt cggtgatacc      1380
     aacctctgta ggaactggtg atgcagtgta tagccaatca aggagttttg ttcactttcc      1440
     agaggcaaca gcaaatctcg acaggaatcg ccacttaccc caaagtgttc gctatactga      1500
     cggacctcat ccaacgtctc attggtcaga tccgtggcag gtcacttcga atcctttctc      1560
     aaattatcga aattcattga actttccacc accaaatccg aatattcctt tcgattttcc      1620
     ggtttccgtt caaggaggaa atccggtgag ttattcacat ttcggctctt ttgtgtcgca      1680
     agggaattat gtgccaatta attcttatgc ttcacaacac ccctttgaaa tggctcctgg      1740
     aaatgccacc cctgcgaggc ctcccactca gccaaatgta attgggggaa gcagaatacc      1800
     gacatcggac tggctaggag ggagctttcg agcaccgaca gctccagctc ctagcataaa      1860
     tccattcgag gattttgatt tcgatcctct ccaaaatcgg gtgaaaactg tcccagtggt      1920
     aaagtggcca atgaaatacg ccggtgagga tcgaggtatg ggtttgaatg acttcttatg      1980
     ggaagtgagc gactggacca aatctgaaca gatttccgaa aatgaacttc tacgttcatt      2040
     cggcaatttg ttgactggcc gagctaaaat gtggtttacc agcaataaac acaggtttgc      2100
     cacatactcg gaattgatag aaaacttgaa gctgaccttt agacatcctg atctagatca      2160
     ctttgtgttg atggatatct atcaaaaaag gcagcaaaag aacgagacct tccttgaatt      2220
     tttcctcgac gttgagaaaa aattcaaaag tttaacggta cagattccgg aaatagagat      2280
     tgtgcaagcc gtgaaaagga acctacgtcc gaaatacaag cgggctttga ttggaaggga      2340
     gctgcatgat ttgtactcac tacaaatcgc aggacaagag atagacgcca ccaatactta      2400
     tctatttgtc aagccccaag caccctcaca aagccatgct gtccaagtag ccgagaaccg      2460
     tgggggaact aacagcaacc aatctcgaga caaccgaccg aagtttggag gaaaatggca      2520
     agccaacaac cccaaattta ttcctaggtc caatcagaat caggtgggcc cgggaggcaa      2580
     gcagatgaat ccaaaagaac cggattcagg gcctcagcaa ccgaagaaaa atggtaaacc      2640
     taagccggat gagaaaccct gtccaccttc tgacgaaagt gaagcttcac acgcggaggg      2700
     aaaaatacag gattttgttc ccctaaatga taagtttatc tgcttcaact gtcgtagtca      2760
     ggagcaatta acctatcaat gtactcggcc ttacaaggtt cactgtcagg tttgcggctt      2820
     caaagggtat cccactcacc gatgcccctt ttgtgcaaaa aactctgcgc gccggaggga      2880
     gtccggccaa ccgaaaagca attaagcgat gttacagata ttttgttcgc acttggctac      2940
     gaaccaaggt tgaatagcgt caacttatct aaatccgata tcaatcaaac ttccgtctta      3000
     tccgttctca cggataatag acctttcatt gatgtctcca ttttcggtcg gacaattaaa      3060
     gccttactgg atagtggcag tcaaaaaacc ttgctttcga acaccacctc tcctatctgg      3120
     agagtgaaca acacgaaagt tttccaatcc aatttaaatc ttaccagcgc atctggtgat      3180
     ccattacagg tgtctggtag agtatacctt cccttcacag tacagggaaa atcaagggtc      3240
     atagaagcaa cgatcgtcga cgatctacca gtcgaatgta tcgcggggat cgactttttc      3300
     gatgctttcg atgtacacat ttccatggat aatgcctatc tgttccaaat aaacacagaa      3360
     gagtgtacaa catcctctcc tgaactcgtt gagctcagct ccgagcagga tcgagagata      3420
     aaccgggtta agagactctt caagccagct atgtccgacc agctagaggt aacctcactg      3480
     gtccaacaca caatagaact gaaagacgaa ttcaagagcg ccgctccaat tcgtctaaca      3540
     cccttccctt attcacccgc cattcataga gcgttgaatg aagagatcga tcggcttctt      3600
     gctctcggta ttattgaaga gtcgaattcc gattgggccc tgaatgcggt accgatcaag      3660
     aaaccgaacg gttcgattcg cttatgcctt gacgcgcgta agttgaacgc ccgaacgaaa      3720
     cgtgatgcgt atcctctcgc gcacgtaggg agaatattgg gtcggctggg gaaaacgcgt      3780
     tacctgagca ccattgacct caaagacgca ttccttcaaa ttcctcttag cccagagtca      3840
     aaaccgttga ccgcattttg cgttcaggga cgaggtatgt tccaatacac tcgtctaccc      3900
     tttggcctaa ccaacagtcc tgcgactctt tcaaggctca tggacaagat cttgggagcg      3960
     ggtgcagtgg agcctcaaat tttcgtctat ttggacgata taatcgtcgc tagcgaaacc      4020
     ttcgaagagc acatcaggct cctcgaagaa ttagctagta ggttacggaa ggcgaattta      4080
     tctataaata tacagaagtc ccagttttgt cactcagaag taccgttttt agggtacctg      4140
     ttgtcaaacg aaggtctcaa gcccgaccca tccaaggttc aggccattct agacttcgaa      4200
     gcccctaaaa ctgttcgaca aatacgtcgt tttttaggga tggtaaatta ttaccgtcgc      4260
     ttcatcggcg acttcagtac catcactgcg ccgatttcag accttctggc cgggaaaccg      4320
     aaggttgtaa gatggacaga agcggctgag caagccttcc gaaccataaa agaacgatta      4380
     ataacagccc ccattctctc gaaccctgac ttcgacaagg agttcactgt tcaaaccgat      4440
     gccagcgatc gcgcagtggc tggagttttg actcagctac aagacgggtc ggagagagtt      4500
     atcagctttt tctcacaaaa gctaaattcc gctcagcaaa actattccgc tacggaaaaa      4560
     gaagcgctgg cggctcttct ggcgatcgac aaatttcgtg gatatattga aggatcacat      4620
     ttcacgttga tcactgacgc gtcagcgctt caatatatcc gaaacaataa atggcgtcca      4680
     tcatcaaggt tgagcagatg gagcttagac cttcaacacc tagatatgac aatagtacat      4740
     cggcgaggat cagataatat agtgcctgat gcactatcta ctccaagact tcctacgagg      4800
     aactagtgca aaacgttcaa gaagatcccg aacaatattc cgatttccgg ttcgaggata      4860
     accagctgtg gaaatatgtc gctgtcgatg atgaaccatt cgacgtgaga tttgagtgga      4920
     agctggttcc tcccccagaa aatcggaaca aaattatcga gaaggagcac ctggatagtt      4980
     tccatctcgg agtagaaaaa actttgtccc ggttgaggct acgatactat tggccatacc      5040
     tagcatccga caccaggaaa tggatccaaa agtgtgcagt ttgcaaggag tgcaaaccgg      5100
     catacgtacc aactgtaccc gtcatgggga aacagaagtt ggccgaccat ccgtggcaaa      5160
     tcattgccat ggattacgtg ggaccactac ccaaaagcag aaccggatat atgcacattc      5220
     tcgtaatcca ggacctgttt agtaagtggt gtcagataca tccaatgcgc cggatagaat      5280
     ccgggtctct atgcaagact ttgcgagagg ggtggttttt gcggaattcg atctcggaga      5340
     tagtgctgac cgacaatgcc tctacattcc tctccaaaga gtttgaagcc ctgctgactc      5400
     aatttgaaat taaacactgg accacggcca gacatcatag ccagggaaac ccggtggaac      5460
     gtttgaatgc ggccgttaga acgtactgta agcaggatca gcgcggatgg gacgttaaaa      5520
     ttccggacat cgaacatgtt ttcaataata cggtgcacgc agcaacagga tttacacctt      5580
     ttttcatcac gcacaatcat gagatcaccc tgtctggcga tgatcaccaa cggatgcgta      5640
     gaaaggagaa ttattccgat gaattgcgtg ccgcttatca aaaacaaatc agcggagaaa      5700
     tctatgatct agtcaagaaa aatcttctga aggcgtacga aacaaatgcg aatcgttaca      5760
     atttgcgtaa acgatctcgc ccagatgatt tcaaaccagg acagtcaatt tacaggcgaa      5820
     atttcaaagc ctccaatgcc ggagagtact ataatgcgaa gctcgcccct atgtatttgc      5880
     cctgtcgcgt agtcgttaag cacggaagta gttcgtacga gttagaagac gaggatggca      5940
     aaaacatagg cgtgtggcct gccgagcatc tcaaaccata atcacgtggc tctcttgcgt      6000
     attctcacgt ttccgtttgc gtatcactgt gtaaatttct ctctcagtgc acggagaggg      6060
     taaattgcat gatgtggttg tgttgactct atcttgtagc gtccagtgtc cctctcacgt      6120
     ggggtagggt gaataggagc aagtaggaga atcactttca ttgagtagaa tactacacca      6180
     ttcatgaagc attgctatgc attagaaaac aggccggccg ataaaaaagt atctcaaaat      6240
     tgagatgaat aaaggtaaat agaaactagg tgtatctttc aaaaggaaag atgtttaact      6300
     agggtaacct attgaccttc agtagtgttc agtggaatga atagcaatta tcttcgaaag      6360
     actatctgtg ggaaccaatc gcgaagaaaa aaaaatgtcg tagtccacct aacaaactcc      6420
     gtaagaaata gttgaatggg agtcatgtgg cttacacgag tcgtttagat gggacgaaaa      6480
     taattaatta cccagcacag ctctagtgaa acacagagcg taacgagtgt tcgacgagtc      6540
     cgagaaaact tttataggac ttaccgtgat ggcgtgccag atcacgggag tccgcccaat      6600
     tgcgcgaacc cgactcgagc acttaataaa tcctaaaatt tgttctttaa aatttgttta      6660
     atttgtagta tttattttct tgtttttttt tctgtaaatt ttcactttac tttttcttta      6720
     tatttattct atatgattat tttcttgtac ctaaatattc gttacttgtt tattgttaaa      6780
     aaaaatatat ttcatacatt ttttttattg taccccgggg gaaa                       6824
//
ID   Gypsy-32_AA-LTR repbase;    DNA;    INV; 781 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_AA_;
KW   Gypsy-32_AA-I; Gypsy-32_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-781
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions  632456  633236.
XX
SQ   Sequence 781 BP; 226 A; 177 C; 210 G; 168 T; 0 other;
     tgtaacatgt gcatgtccca tagagtaaat taaaaaaata aaaattatgt gcgttgcgtt        60
     tgattaggag ttagaattag aattgttaaa attttccctt aaaaatgccc aatcgacaca       120
     ccgtcactgc actaatcccc ataaaatgcg cgctccatcg gcaataatgc ggataatact       180
     ggttgcgaat gggacgagag agaggagtcc cgaaaattat accagtggac gaggctcctt       240
     ccggagtcaa acagaaaggc acgggctctt ttgccttgag ctgtcgtgga agaaacaagt       300
     gctccagtga agatctccga tccagtgaga aattagtgga cgaaaattaa agtgcgggtg       360
     ttagaccctc aacgcggtac cctattaagg gagtgaatag cccgtgtccg tcagtgctga       420
     ggaagttaga acctcgaagg ggcgtaggtg gtgattagtg ccggtaaaag atattcgatt       480
     ccacgcggga ggctcaacct agagggtcga acgtggagac ccaagccgcg tgtgataaaa       540
     accgcgttcc gcggaagtga agggcgaaaa acctgtccga aactgcaggt gccccggata       600
     gttgtgcgta gcgtgtgaac cgagtgcgaa gtgcctagaa gatcgaccca gcggccgacg       660
     gtggtgtggg ccatcctaaa tcccccccag caaatactct catcaggcta ggcgcccctg       720
     ggatgagacc aggtaagtcc atgctccctt cttcctatta gatgcaaaaa gcaaacttac       780
     a                                                                       781
//
ID   Gypsy-32_AnFu-I repbase;    DNA;    INV; 4242 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_AnFu-I;
KW   Afun1.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4242
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2881-2881 (2021).
XX
RN   [2]
RP   1-4242
RA   Cook M.J., Martin J., Lewin A., Sinden E.R. and Tristem M.;
RT   "Systematic screening of Anopheles mosquito genomes yields
RT   evidence for a major clade of Pao-like retrotransposons.";
RL   Insect Mol. Biol 9(1), 109-117 (2000).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The sequence 965-2014 shows ~99%
CC   identity with the reported partial reverse transcriptase sequence
CC   Afun1 [2].
XX
FH   Key           Location/Qualifiers
FT   CDS           106..4239
FT                 /product="Gypsy-32_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDSETETFKVASAFVTERKNEKKVETNQIAALKRMV
FT                 EELQSKLDESLGASATSRDGSDQNVRKTNSLTGRIPEIRELRECVTPFDPK
FT                 NAVCPDAKVWLQNFEDTSCVYGWNEAVKLHCARLSLAGCAKLWFEGLQSQI
FT                 KSWDAFKEGLAAGFPSTKNEAYYHNWLAARKWNAKETPVEYVYEMLAMGRK
FT                 GGFQEETIVMYIVNGMCDLWKRSKLSIGRVSTISDLLKEISWVEGIAAVDG
FT                 KKDYNDPVKSTTEKDDDQVKKCFQCGLKGHVAKSCTKVKCYNCGREGHLKK
FT                 DCRSASKALTLKNTPMNVVDNKSVFVKTVRVEGETMMALVDSGARVSTIQQ
FT                 KWADKIGNLKPTHKILRGFGRKEIQVNSKVVTELLLDNVKLEIELQVVPNW
FT                 VQDTAIIIGEEVLGKEGLVVTVRAGSVTFQMEPNCRSEGKEREDENDSAKS
FT                 VMHMFTIKEGSRQVVDRKMVNSDGSYEHTDRLIKVVNEYRDVFALNIKELG
FT                 CAKSTAISLKLTQIEPVYVKPRKLEYAREIMLNEMVEELLEAEVIKETDSP
FT                 YNSPIVLVPKKNGRFRMAIDYRMLNAKTVKDKFPMPDLEQCLQRLSGAKMY
FT                 ITLDLFSGYYQIPVHQDSQDYTAFSTPSGHFKFTRMPFGLANGCAVFQRAM
FT                 NKIVEVCKRQKVAIVAYLDDLVVPGQNEEELLNSFEILLVALRAEGYTINL
FT                 EKSHFFKRRVAFLGFEISENGVRPGEDKTKAVKEFPIPLTTHDVQRFIGLA
FT                 GFFRRFVRNFSMIAAPLLNLLKKNKEFEWHEAQQRSFEAIKGGLISRPILM
FT                 LYNPQAETELHTDASRLGVAGILMQKSDEGWHPVSYFSRKTSPTEEMYHSY
FT                 ELEVLAVVASVERFRHYLIGRPFVIKTDCSAVKDTYAKKDMNARIARYFLR
FT                 LMEYDCKLEHRSGSQMKHVDALSRAPVEEKAQHMEETVADRLMVIEFGNND
FT                 FIVSLQRQDENLVKIIDTLNREPNCDEDRQVHQNYVLENHRLFRIIDGRKC
FT                 WVIPTRVRWRILKSYHDEKGHFGVEKVLSTLNEKFWFPRMRRYVTEYIKAC
FT                 PQCAYYKEKGGKPEGFLHPIPKTPIPFGTIHLDHLGPFPKSVKGYEHILVA
FT                 ICGFTKFVFMKATRTTKTQPVIEMIEELASVFGLPSRIISDRGTAFSSGAF
FT                 RTFCEEYGIENVLVAVGTPRANGQVERSNRTILSALRTMVEEEGRRWDEKV
FT                 KIVQNAINTMPNSTTKVAPCRLVLTYRPRDMLKNIIISAIASNDSESSVPI
FT                 EELNARVTEKIKKSQENQKKYYDKKRKEADNYEVNDMVLVVKDQYTPGGSR
FT                 KLEPKYKGPYIVREKLPNDRYRVASVPGTTTRTFSTVYSADRMKKWGNLVE
FT                 LESPEVEDNLQNVVS"
XX
SQ   Sequence 4242 BP; 1453 A; 668 C; 1138 G; 983 T; 0 other;
     ctgtagacag gattacggat aaagcagtag ctagcgatcg gaagcgaaag aatcggaaag        60
     gatcaattgt agtatagctg aacccgaaat catctagtta aagtgatgag cgatagcgag       120
     actgaaactt ttaaggtggc aagtgcgttt gtcactgaaa gaaaaaatga gaaaaaggtg       180
     gagaccaacc aaatagcagc gcttaaacgc atggtagagg aactgcagag caagctcgac       240
     gagagtttgg gtgcgagtgc gacgagcagg gacgggagtg atcaaaacgt tcgcaaaact       300
     aattcgttaa caggtcgcat acccgagata agagaattgc gtgagtgcgt aaccccgttt       360
     gacccgaaga acgcggtgtg tccggacgct aaagtgtggt tacaaaattt tgaggacacg       420
     agttgtgtgt atgggtggaa tgaagcagtg aagctgcatt gcgcacggtt aagtctagcg       480
     ggttgtgcta agctgtggtt tgaagggcta cagagccaaa tcaaatcgtg ggacgcattt       540
     aaagaaggtt tagcagcagg gttcccttct acaaaaaatg aagcgtatta ccataattgg       600
     ttagccgcga gaaagtggaa cgccaaggaa acacccgtag agtatgtcta tgagatgtta       660
     gcgatgggca ggaaaggcgg atttcaagag gaaacgatag taatgtatat cgtaaatggt       720
     atgtgtgatc tatggaagag gtcaaaactg tcgatcggac gcgtgtcaac gatctccgac       780
     ttgttaaagg aaataagttg ggtggaagga attgcagcag tagatggcaa aaaggattac       840
     aacgatcctg ttaaaagcac gacggagaaa gatgacgatc aagtgaaaaa gtgtttccag       900
     tgtggcttaa aaggacacgt ggcgaagagc tgcacaaagg ttaaatgcta taattgtggt       960
     cgtgaagggc atcttaagaa ggattgtcgt agtgcaagca aagcacttac acttaaaaac      1020
     acaccaatga atgtagtgga caataaaagt gtgtttgtaa aaacggtcag agtggaaggt      1080
     gaaaccatga tggcgttagt agattcagga gcacgtgttt caacaattca gcaaaaatgg      1140
     gcagataaaa taggaaattt gaagcctact cataaaattt taagagggtt tggtagaaaa      1200
     gaaatacagg tgaattcaaa agttgtcacg gaattactat tagacaacgt taaactagaa      1260
     atcgagcttc aagtagtgcc aaattgggta caggacaccg cgataataat cggtgaagaa      1320
     gtgttgggaa aagaaggatt agtagtaaca gtgcgtgctg gatcagtaac gttccagatg      1380
     gaaccaaact gtcgctcaga gggaaaagaa agagaagatg agaatgatag tgcgaaatca      1440
     gtaatgcaca tgttcaccat taaagaaggg tcaagacagg tcgtggatcg caaaatggtg      1500
     aattcagatg gaagttacga acacacggac agattgataa aggttgtaaa tgaataccgt      1560
     gatgtgtttg cgttgaatat taaagagtta gggtgtgcaa aatcgacggc aatttcacta      1620
     aaattgaccc aaatcgaacc agtgtatgtg aaaccacgga agttggagta tgcgcgagaa      1680
     atcatgttaa acgaaatggt cgaagaactg ttagaggcgg aggtaataaa ggaaacagat      1740
     tcgccttata atagtccgat tgtgttagtg ccgaagaaaa atggacgatt taggatggcg      1800
     atcgactatc ggatgcttaa cgcaaagaca gtaaaggata aattccctat gcccgacctc      1860
     gaacagtgct tacagagatt aagtggtgcg aaaatgtata taacgctaga tctgttcagt      1920
     gggtattacc aaataccagt acatcaggat agccaagatt acactgcgtt ttcgacgccc      1980
     agcggacatt ttaaattcac gcgtatgcca tttggactgg caaacggttg tgcggtattt      2040
     caacgggcga tgaataagat tgtggaggtg tgtaagcggc aaaaggtagc aattgtggcc      2100
     tacctggacg atctggtggt tccaggccag aatgaggagg agctgctgaa tagtttcgaa      2160
     atactattgg tagcattacg agccgaggga tataccatca atctggagaa gagccatttc      2220
     ttcaaacgaa gagtagcatt tcttggattc gagatatcgg aaaatggagt tcgaccgggg      2280
     gaagacaaaa ccaaggcggt aaaggagttc ccgattccat taaccacgca cgacgtacaa      2340
     cggttcattg gactggcggg atttttcaga aggtttgtgc gcaatttcag tatgattgcg      2400
     gcaccgttgc tgaatttgct aaagaagaat aaggaattcg agtggcatga ggcgcaacaa      2460
     agatcatttg aagcgatcaa aggtgggtta ataagtcgcc caatactaat gctgtataat      2520
     ccgcaggcag aaacagaact acataccgat gcatcaagat tgggagtagc tggtatactg      2580
     atgcaaaaaa gcgatgaggg atggcatccg gtgagctact ttagtcggaa aacgtcacca      2640
     acagaagaga tgtatcacag ttacgagctg gaggtattag cggttgtcgc cagcgtggaa      2700
     agatttcggc attacttgat tggacgtccc tttgtaatca aaacagactg ttcagcggtg      2760
     aaagacacat atgcgaaaaa ggatatgaat gcgcggatag cgaggtattt tttacgctta      2820
     atggagtacg attgtaaact ggaacataga agtggttcac aaatgaagca tgtggacgca      2880
     cttagtaggg caccagtgga ggaaaaagca caacatatgg aagaaaccgt ggcagatcgc      2940
     ctgatggtga tagagtttgg aaataatgat tttatagtga gcttgcaaag acaagatgaa      3000
     aatttagtta aaataataga cacattaaat agggaaccaa attgcgatga agatagacag      3060
     gtgcatcaaa attatgtgtt agagaatcat cggttgttca gaataataga cggacggaaa      3120
     tgttgggtta ttccaacgcg cgtaagatgg agaatattga aatcgtatca tgatgaaaaa      3180
     ggtcattttg gagtggagaa ggtattatca acgttgaatg aaaagttctg gttcccacga      3240
     atgagaaggt atgtaacgga atatataaag gcttgcccac aatgtgcata ttacaaagaa      3300
     aagggtggaa aacctgaagg gtttttgcat cccattccga agactccgat tcctttcgga      3360
     acgatacact tagatcattt gggaccattt ccaaaatcag taaaaggata cgagcacatt      3420
     ttggtagcaa tatgcggatt cacgaaattt gtctttatga aagcaacgcg aacgacgaaa      3480
     acacaaccgg taatagaaat gatagaagaa ttagctagtg tgtttggatt accttcacgg      3540
     ataatatcgg atagggggac agcgttctca tcaggagcct ttagaacatt ttgtgaggaa      3600
     tatgggattg agaatgtact ggtagcagtg ggaacgccga gggcaaatgg ccaggttgaa      3660
     agaagcaata gaacgatatt gtcagcgttg cgaacgatgg tggaggaaga aggtagaagg      3720
     tgggatgaaa aggtaaaaat tgtacaaaat gcgattaaca ccatgccaaa ttctacaact      3780
     aaggtcgcac cgtgtaggtt ggtgttgact tatagaccta gggatatgct aaaaaacata      3840
     attatttcgg caatagcatc aaatgattca gaatcatcag tgccaataga ggaattaaat      3900
     gcgcgtgtaa cagagaaaat taaaaaaagt caagaaaatc aaaagaagta ttatgataaa      3960
     aagcgtaaag aagcggataa ctacgaggta aatgatatgg tacttgtagt gaaggatcag      4020
     tatacgccag gcggaagtcg gaagttagaa ccgaaataca aaggaccgta tatagttcgc      4080
     gaaaaattac cgaatgatag atatagggta gccagtgtac caggtacgac gacgcgtaca      4140
     ttttctactg tatattcagc ggaccgaatg aaaaagtggg gcaatctagt ggaattggaa      4200
     agcccagaag ttgaggacaa cttgcagaat gtggtgtccg ac                         4242
//
ID   Gypsy-32_AnFu-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-163
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2962-2962 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 163 BP; 61 A; 21 C; 30 G; 51 T; 0 other;
     tgttaagatt gaactaacac agttgcacga actaattagc tgtaggtatt agtattagtg        60
     tactttgtaa taatgtaata atgtaatgat agtcaataaa attagtctct aagtatcagt       120
     cgagcagaac ggtcactaaa gaaagaacaa gctgtttctt aca                         163
//
ID   Gypsy-32_AnMe-I repbase;    DNA;    INV; 4461 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4461
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6844-6844 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..4448
FT                 /product="Gypsy-32_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLSPEETPITEEQRRLSQNGVLNAAFIQHPPPSQNAP
FT                 SLQTTSDITMIQQMLHLLQQQMAQQQQQMTQQQQLFSQLMQQREQQQPTPV
FT                 THYSELQPTAKPSNPELILEALAGNITEFHHDAEANITFESWYARYDDLFA
FT                 QDASRLDDAAKVRLLGRKLGAGEYARFTNFILPRAPRDLSFSEMVEKLTVL
FT                 FGKMESTLSKRYKCLSITKSRSEDLLSFTGRVNRACVDFEFASMTEEQFKC
FT                 LVLVCGLKDECDRDIRVRLLASMEERTDATLAQLAEDCHRLARVKADSAMI
FT                 ATDTSERVHAVHAGGDKQRYQRNDERNSKPFDRSTGSKPRNPCWLCGALHW
FT                 SRECTYKAHKCRDCGRIGHREGHCASSHRRTRHKKFYQRPSVATRVVRVNV
FT                 CSVQQHRKFVTIQIGNKSARLQLDTGSDISVISQRMWKQLGKPYLTPVTVR
FT                 AKAASGDVLRLEGEFIANVSIENRTKRATIRVSKMELALLGADMVNLFALG
FT                 TIPMDNFCNNIKEADPRSWEDKFPSVFHGTGICTKASVHLQLRKDTRPVFR
FT                 PKRPVAYAMEEIVNKELDRLEGLGIISPVDYSDWAAPVVVVRKANGQIRLC
FT                 GDYSTGLNAALHPHEYPLPLPQDIFSKLARCKIFTQLDLSDAFLQVEIETG
FT                 CRPLLTINTHRGLYHYNRLPPGIKVAPGAFQQIMDKMLAGINGVSAYMDDV
FT                 IIGGKTQEEHDIALEETIKRIQDYGFTIRSEKCAFNKPQIRYLGHIIDSQG
FT                 LRPDPLKIEAIKKLPPPKDISGVRSFIGAVNYYAKFIPSIRDLRYPMDKLL
FT                 QNGNTFEWTPECQKVFERFKTVLSSDLLLTHYDPKLDIVVSADASSIGLGA
FT                 TLSHKFADGSLKVVQHASRALSKAEEGYSQIDREGLAIIFAVTKFHRMLYG
FT                 RHFTLQTDHRPLVRIFGSKKGIPTYTANRLQRFALTLQLYDMTIEYIPTGS
FT                 FGNADVLSRLIQNHAKPESEYIVASIELEQDLRSVVVNALLTFPIRFRDIE
FT                 LYTQQDPSLQKVYKYVRDGWPRDVAYGTDLARLYDRRESLTNVDGCILFGE
FT                 RVVIPEKLRNRCLNQLHRGHPGMQRMKAVARSYVYWPKLDDDIARYVASCE
FT                 ACAAAAKSPPRATSMAWPKPSAVWNRVHIDYAGPWEGVYFLVVVDAYSKWP
FT                 EIVKTTSTTTTATIAILRNLFARFGMPATLVSDNGTQFVSGPFKEFCQHNG
FT                 IEHITTAPFHPQSNGQAERFVDTLKRSLRKIRTEESKLDEDLELFLMTYRS
FT                 TPNAQLEQQKSPAEEMFGRPIRTALELLRPPSSCEESSPSSSISSVRRFHR
FT                 SDTVWAKYFSNNSWKWIPGEIVRSCGRVMFEIVAEDGRLLRRHVNQLRRRV
FT                 GNGSSPAVQLPLDVLLAEWKASSQPESGHHVPATHSTDQSAFETSQHTAAS
FT                 TPPQPQQALETEHPTEGTNQQQIGVPRRSSRVRRLPRRLGAYQLN"
XX
SQ   Sequence 4461 BP; 1236 A; 1107 C; 1106 G; 1012 T; 0 other;
     gtggcgacga gttaagtgaa cccagtcaac tttttttttt aagtgcaaca attccgcgaa        60
     aacgccgtag aatgttaagc cccgaagaga cgccgatcac cgaggagcag agacggctgt       120
     cgcagaatgg tgtcctgaac gcagcattca tacagcatcc accaccatcg cagaatgcgc       180
     catcgttgca aacaacatcg gacatcacaa tgatacagca aatgctgcac ctgttacagc       240
     agcaaatggc ccaacagcag cagcaaatga cacagcagca gcaactattt tctcagctta       300
     tgcagcaacg ggaacagcag caacctacac cagtgaccca ttatagtgag cttcaaccta       360
     ccgcgaaacc cagcaatccg gagctcatcc tcgaagctct tgctggcaat attaccgagt       420
     ttcatcatga tgcggaagcc aacatcacat ttgagtcatg gtacgcgcga tacgatgacc       480
     tgttcgcgca agatgcatcc cgtttggacg acgcagcaaa agttcgactc cttggacgaa       540
     agttaggagc aggcgagtat gctcgtttca ccaatttcat tttaccgcgt gccccccgtg       600
     acctttcatt ttcagaaatg gtggaaaagc tcacggtgct ttttggcaaa atggagtcga       660
     ccctaagcaa gcggtataaa tgtttgagca tcaccaaatc gcgctccgag gatcttttgt       720
     catttaccgg ccgagtaaac cgcgcatgcg tcgattttga atttgcatct atgacagaag       780
     agcaattcaa atgtctcgtc ctggtatgcg gattgaagga tgaatgtgat cgtgatattc       840
     gtgtcaggct gcttgctagc atggaagagc gcacagatgc aacccttgcg cagctagcag       900
     aagattgcca ccggctagca cgagttaaag cggatagtgc tatgatcgcg accgatacga       960
     gcgaacgtgt gcacgcggtc catgcgggtg gagataagca gcggtaccag aggaacgacg      1020
     agcgaaactc caaaccgttt gacagaagca ctggttccaa accccgtaat ccgtgttggc      1080
     tttgtggtgc attgcattgg tccagggaat gcacgtacaa ggcgcacaag tgtcgtgatt      1140
     gcggtcgcat cggtcatcga gagggacatt gcgcttcctc acaccgccgc acgaggcata      1200
     agaaatttta ccagcgacca tccgtagcaa ccagagtggt acgagtcaac gtttgcagtg      1260
     tccagcagca cagaaaattt gtgaccatcc agatcgggaa taaatcagca aggttacaat      1320
     tggataccgg ctcggatatc tcggttatca gccagcgcat gtggaagcag ttgggtaaac      1380
     catatctgac accagtaacg gtaagagcca aagcagcatc cggtgacgtc ctcagactgg      1440
     aaggtgagtt catagcgaac gtgtccattg aaaaccgtac aaagcgagct accataagag      1500
     tgtccaaaat ggagttggcg ttgttgggag cggacatggt taatcttttc gccctaggaa      1560
     cgatcccgat ggataatttt tgcaacaaca ttaaagaagc agatccacgg tcctgggagg      1620
     acaaatttcc gtcggtattc catggcacgg ggatttgtac caaagccagc gtacatctgc      1680
     agctacgaaa agatacccgt ccagtgtttc gtcccaagcg ccccgttgcg tatgcaatgg      1740
     aagagattgt caacaaggag ctcgatcggt tggaaggctt gggcattata tcacctgtcg      1800
     attactcgga ttgggcagca ccagtcgttg tggtcaggaa ggctaacgga cagatacgac      1860
     tatgcggcga ttattcgacc ggcctgaatg cagctttaca cccgcatgag tatccacttc      1920
     cgttaccaca ggatattttt tctaaactgg ctagatgcaa aatatttaca caactcgatc      1980
     tttcagatgc gtttctccag gtggaaatag agacaggatg tcggccattg ctcacgatta      2040
     acactcaccg aggcctttac cactacaata gactcccccc aggcatcaaa gtagcaccgg      2100
     gagcattcca gcagatcatg gacaagatgc tcgccggcat aaacggagta tcagcctata      2160
     tggatgacgt gattatcggt ggtaaaacgc aagaagagca cgacatcgcc ctggaggaaa      2220
     caattaaacg catacaagac tacggcttta caatacgatc agaaaagtgt gcgttcaata      2280
     agccacaaat ccgctattta gggcatatta tagacagcca aggcctcaga cctgacccgt      2340
     tgaagatcga agccattaaa aaactgcctc caccgaaaga tatctcagga gtacgatcgt      2400
     tcatcggtgc ggtgaactac tatgcaaagt tcatcccaag tattagagat ctgcgttacc      2460
     caatggacaa attgctgcaa aatggtaaca catttgaatg gacaccggaa tgccaaaaag      2520
     tgttcgagcg tttcaaaacc gttctttctt cagacctcct gctcacacat tatgacccga      2580
     agcttgacat tgtggtttcg gccgatgctt catctattgg acttggggca acgcttagtc      2640
     acaaatttgc tgatggatct cttaaggtgg tgcaacacgc atctagagcg ctgagtaagg      2700
     ctgaagaggg ttacagccaa atcgatcgag aaggtctcgc catcatattt gctgtaacga      2760
     aattccatcg gatgctatac ggtcgacatt ttacgttgca aaccgaccac cggccattag      2820
     tgcgaatttt tggaagcaaa aaggggattc caacgtatac agctaatcga ttgcagagat      2880
     tcgcattaac acttcagctt tacgacatga ccatcgaata catccccact ggttcttttg      2940
     gcaacgccga cgttctttct cgcctcatac aaaaccatgc aaaaccagag tcggaataca      3000
     tcgtagcaag catcgaatta gagcaggatc tcaggtcagt tgtcgtaaat gccttactaa      3060
     cattccctat tcgtttcaga gacattgagc tctacactca gcaagatccg tcgctccaga      3120
     aggtttacaa gtacgtgcga gatggttggc ctcgcgacgt agcttacgga acagatcttg      3180
     cacggctcta cgatagaagg gaatcgctga ccaacgtgga tggctgcatt ctttttggag      3240
     agagagtagt catcccggag aagctgcgca atcgctgttt aaatcaacta caccgaggac      3300
     atccgggaat gcagaggatg aaagcggttg cacgtagcta cgtatattgg cctaagttgg      3360
     atgacgacat agcacgctat gtggcctcct gcgaggcatg tgcagcagcg gcaaaatcac      3420
     cgccaagggc aacatcaatg gcgtggccaa aaccttcggc agtttggaac cgagttcaca      3480
     tcgattacgc aggcccttgg gagggcgttt atttcctggt tgtagtcgac gcgtattcca      3540
     aatggccgga gatcgtcaaa actacgagca ccaccacaac agccacgatt gccattctaa      3600
     ggaacttgtt tgctcgtttc ggtatgcctg caaccttagt cagcgacaat ggcacacagt      3660
     tcgttagcgg tccgttcaag gagttttgtc agcataacgg gattgagcat attactacgg      3720
     ctccctttca cccacagtcg aacggacagg cggagcgatt cgtcgatact cttaaacgtt      3780
     ctttgaggaa gatcagaacg gaggagagta agctagatga ggacttggag cttttcctga      3840
     tgacgtatcg ttctacacca aatgctcaac tcgaacagca gaaaagtcca gcggaggaaa      3900
     tgttcggtcg cccgataaga actgcattgg agctattgcg acctccttca tcgtgtgaag      3960
     aatcatcccc atcatcatca atttcatcag ttcgcagatt tcatcgcagc gacacagttt      4020
     gggcaaagta ttttagcaac aactcgtgga agtggatccc aggggagatt gtccgcagct      4080
     gcgggcgtgt aatgttcgag atcgttgccg aagatggacg gttgttaagg cgtcacgtaa      4140
     atcagctgag gcgacgagtt ggtaacggtt catcaccagc agttcagcta ccccttgacg      4200
     tgctgttggc ggaatggaag gcatccagtc agcccgagag tggacatcat gtaccggcaa      4260
     cccattctac tgatcagtct gcatttgaga catcccaaca cactgcggcc tccacaccac      4320
     cacaaccgca gcaggccctg gagaccgaac atcctacaga aggtacgaac cagcagcaga      4380
     taggcgtgcc acgtaggtct tctcgcgtta gaagactccc ccgtcggctt ggagcctatc      4440
     agctcaatta acagggagag a                                                4461
//
ID   Gypsy-32_AnMe-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-274
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6869-6869 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 274 BP; 64 A; 61 C; 72 G; 77 T; 0 other;
     tgttgtgcaa gcgcggtctt acgctgggcg cagtacgcag ccacaggtac tcggtgttgt        60
     ctggtaaccg acagcatccg acgtagccga agggttcgtc ggtacttcgc gcggcggcaa       120
     agcgagagag atcggctctc ttccatttcg ggtgccgtcg tagcaggacg tgttttctac       180
     cgcgtatcgt ctttttatat gtgtacaatt tttaatgtgt tagtttacta aagttatttt       240
     gtcgaataaa agcatacagt accaaaacac aaaa                                   274
//
ID   Gypsy-32_CQ-I repbase;    DNA;    INV; 4451 BP.
XX
AC   AAWU01031813;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_CQ_;
KW   Gypsy-32_CQ-LTR; Gypsy-32_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4451
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 443-443 (2011).
XX
DR   Genome; AAWU01031813; Positions    6729   11179.
XX
CC   Positions [3366-3830] - Integrase core
CC   'GAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..3334
FT                 /product="Gypsy-32_CQ-I_2p"
FT                 /translation="MSNPPGINKSGSAGSGQASGEQPFKDTIIQLLANQHA
FT                 LMEELTEQVKNLQAAPRNELVLDSLATNITEFVYDADKGCTFDTWYGRYAD
FT                 LFDADASSLDDAAKVRLLLRKLSPAAHDRYTSFILPKVPKDFKFKETVDKL
FT                 KSIFGTPVSIFHRRYQCLQTAKDESEDLISYSCRVNRACVDFQLKKLDEEQ
FT                 LKCLVFVCGLTAAKDSDIRMRLLSKINESQGMTLEKIVEECKSLATLKQDT
FT                 VLIGSHASSSVQLSTNAVRTETKQKPKGKFGGKQRDNIPKSPCWSCGGMHY
FT                 MDECKFREHKCRDCNRVGHREGYCSCFSAKNRTKKEHKFQPKPQQKQRSSK
FT                 SVTVGSIQQGRRYTTVGINGVPVELQLDSGSDITILSYQNWEKAGRPPTVP
FT                 PDCSARAASGDKLNISGMFSATISIGGVHKQGKCYVSGPQLNLNVLGADAM
FT                 DKFGLWDVPLSSICNLVASADEDADVAELKSRFADVFSDRAGVCKKTQVHL
FT                 DLKPDAKPVFRQKRPVAYSMEATVEDELQRLQDLGIITPVTYADWAAPIVV
FT                 VRKPDRSIRICADYSTGLNNALEPNSHPLPLPEDIFARMANCTIFANIDLS
FT                 DAYLQVEVDEESRKLLVINTHKGLFQYNRLSLGIKNAPGAFQKIMDTMLCG
FT                 LPRTCPYLDDIIVGGRTRQELKLNLQQVFQRLQEYGFTVKLSKCRFFMNQV
FT                 KYLGQLLDAEGIRPDPEKIAAVVNMPAPHDVPTLRSYLGAINYYGKFIKEM
FT                 RKFRQPLDDLLRKGAKFEWSADCQRSFDRFKEILQSPLLLTHYNPRLDIVV
FT                 SADASNVGIGARIAHRFPDGTEKAIYHASRSLTPAEKNYSQIEKEALALVY
FT                 AVTKFHRMIYGRNFLLQTDHKPLLSIFGSKQGIPAYTANRLQRWALTMLLY
FT                 DFHIEHIATDHFGHADILSRLINAHVKPDEDFVIASIELERSICSIVSQSL
FT                 GFLPVTYKVIAAETEGDETLQKVKHYVIHGWPENKKAVEGAEIQQFFARRE
FT                 ALSIAHKCLMYGERIIIPKKLQKRVLQQLHKGHPGIERSRSLARNYVYWPN
FT                 IDDHISNLISGGGGGQN"
XX
SQ   Sequence 4451 BP; 1028 A; 1300 C; 1268 G; 855 T; 0 other;
     agtggcgacg ggtctgtgga gtttgtcggt ttgtcaattt ttttttcggc gaaaatcgca        60
     aaatcgttgt tgccgtgctt ccacgtggac gtttcttccg tggcccgcag cgatgtccaa       120
     cccaccggga atcaacaaat ccggaagcgc tggatccggt caagcgagcg gggaacaacc       180
     gttcaaggac accatcatcc agctgctcgc caatcaacac gcgctgatgg aggagctcac       240
     cgaacaggtg aagaacctgc aggcggcgcc ccggaacgag ctggtgctgg actccctggc       300
     cacgaacatc acggagttcg tctacgacgc ggacaagggc tgcacgttcg acacctggta       360
     cggacggtac gcagatttgt tcgacgccga cgcgtcgtcg ctcgatgacg ctgcgaaagt       420
     ccggctgctt ctgcggaagt tgtccccggc cgcgcacgac cggtacacgt cgttcatcct       480
     cccgaaggtt ccaaaggact tcaagttcaa ggagaccgtc gacaagctca aatccatttt       540
     cggcacaccc gtgtcgatct tccatcgtcg ctatcaatgt ctgcagacag cgaaggacga       600
     gtcagaggat ttgatcagct attcctgcag agtcaaccgc gcctgcgtgg acttccagct       660
     gaagaagctc gacgaggaac aactgaagtg cctggtgttt gtgtgtggac ttacggctgc       720
     caaggactca gacatccgta tgcgtctgtt gtccaagatc aacgaatctc agggcatgac       780
     cctcgagaag atcgtagagg aatgcaaatc gctcgctact ctcaagcagg acaccgtcct       840
     aattgggagc catgcatcct cctccgtgca gctgtccaca aacgcggtcc ggaccgagac       900
     gaagcagaag cccaagggga agttcggagg caagcagcgc gacaacatcc cgaaatcacc       960
     gtgctggtcg tgcggcggaa tgcactatat ggacgagtgc aagtttcggg agcacaagtg      1020
     ccgggactgc aacagagtgg gacatcgcga aggctactgt tcctgcttct cagcaaagaa      1080
     ccggaccaag aaggagcaca agttccagcc gaagccgcag cagaagcagc gctcgagcaa      1140
     gagcgtgacc gtcggcagca tccagcaggg tcggcgctac acaaccgtcg gcatcaacgg      1200
     cgtgccggtg gagcttcaac tagattccgg ctcggatatc accattctct catatcagaa      1260
     ctgggagaaa gctggacgtc ctccaacggt tccaccggac tgctctgcga gggcagcctc      1320
     cggggacaag ctgaacatct ctgggatgtt ttcggctacc atcagcatcg gcggagtcca      1380
     caaacaaggc aagtgctacg tgagtggacc gcagcttaac ctcaacgtcc tcggagccga      1440
     cgctatggac aagttcggcc tctgggatgt tccactgtcg tccatctgca acctggtggc      1500
     cagtgcggac gaagacgctg acgttgccga gctgaagtcg cggtttgcgg acgtgttcag      1560
     cgatcgcgct ggtgtctgca agaagacgca ggttcacctc gacctgaagc cagatgcgaa      1620
     gcctgtgttc cggcaaaagc ggcctgtggc gtactccatg gaggccaccg tggaggatga      1680
     gctgcagcga ctccaagatc tgggcatcat caccccggtc acgtacgcgg attgggccgc      1740
     gcccatcgtg gtcgtgcgga aaccggatcg ctctatccgg atctgtgccg attattcgac      1800
     cgggctgaac aacgctttgg agccgaacag ccacccacta cccctgcccg aggacatctt      1860
     cgcgcgaatg gccaactgca ccatcttcgc gaacatcgat ttgtccgacg catacttgca      1920
     agtggaggtc gatgaggaga gccgcaagct gctggtcatc aacacccaca aggggttgtt      1980
     ccagtacaac cgcctgtctc tcgggatcaa gaacgctccg ggggcattcc agaagattat      2040
     ggacacgatg ctgtgcggac tgccgcgcac ctgtccgtac ctggacgata tcatcgttgg      2100
     cggtcgaacg cggcaggagc tcaagctaaa tcttcagcag gttttccagc gcctgcaaga      2160
     gtacgggttc accgtgaagc tcagtaagtg ccgcttcttc atgaaccagg tcaagtacct      2220
     gggccagctg ctggacgccg aaggtattcg ccccgacccg gagaagattg ccgccgtcgt      2280
     gaacatgcca gcccctcatg acgttcccac acttcggtcg tacctgggtg cgataaacta      2340
     ttatgggaag ttcatcaagg agatgcggaa gtttcggcag ccgctggacg acctgctccg      2400
     gaagggtgcc aagttcgagt ggtcggccga ctgtcaacgc tcattcgacc gcttcaagga      2460
     aatcctgcag tctcctctct tgctcaccca ctacaatccg cgtctggaca tcgtggtctc      2520
     cgcggacgca tccaacgtgg gcatcggcgc ccgcatcgca caccgcttcc cggacggcac      2580
     cgagaaggca atctaccacg cgtccagaag tctgactccg gcggaaaaga attacagcca      2640
     gatcgaaaag gaagccctcg ctctggtgta cgccgtgacc aaatttcacc ggatgatcta      2700
     cggacgcaac ttcctcctgc aaacggacca taaaccactt ctctcgattt ttggttcgaa      2760
     gcaaggaata ccggcgtaca ctgctaaccg cctgcaacgg tgggctttaa cgatgcttct      2820
     ctatgatttc cacatagagc atatcgctac cgatcacttt gggcacgctg acattctatc      2880
     tcgcctgatt aatgctcatg ttaaaccgga tgaagatttt gttattgcgt cgatagagct      2940
     tgagaggtcg atctgcagca ttgtgagcca gtctttggga ttcttgccgg tcacctacaa      3000
     ggtgattgcc gcagagactg agggagacga aaccctgcag aaggtgaagc actacgtcat      3060
     ccacggctgg ccggagaaca agaaagctgt cgaaggcgca gaaatccagc agttcttcgc      3120
     tcgtcgtgag gcactcagca tcgctcacaa gtgtctcatg tatggagagc ggatcatcat      3180
     ccccaagaag ctgcagaagc gggtgctcca gcagctgcac aagggccatc cgggcatcga      3240
     gcgatcgcgg tcgctggcgc ggaactacgt gtattggccg aacatcgatg atcacatttc      3300
     caacctgatc agtggcggtg gcggtggcca aaactgacac gaaaacagcg ctctcatcgt      3360
     ggcccatccc ggagcggcca tggcagaggc tgcacgtcga ctacgccgga ccggtggacg      3420
     gaacgtactt tctggtcctg gtcgacgccc tctcgaagtg gccggaagtg gttccaacgc      3480
     ggcggatcac cacggagaag accctggcca tcctgcgtaa catcttctcg agattcggca      3540
     tgccggaggt gctggtctcc gacaacggcc ggcagttttg cagcgagcac ttcgagaggt      3600
     actgtgacgt caacggtatc atgcacctca agaccgcgcc gtaccacccg cagagcaacg      3660
     gccaagctga gaggtttgtt gatactttta aacgtacact caagaaaatt caagcaggag      3720
     gggaggaact agaagaagcg atcgacactt tcctccagtg ttaccggtcc acaccgtgcc      3780
     gcagcgctcc agaggggaaa tctccagcgg aagttcttct cggcggtcgc atccgtacct      3840
     cgctcgagct gatgaaacca ccaagcagct tctacaagga ctccagttcc aagcaagatc      3900
     agcagttcga ccgtaaacac ggtgccaagg cgaagaactt cgagcccaaa gacggagtgt      3960
     ttgcgaaggt tcaccacggc aacgagtgga gctgggtgcc aggtgaggtc gtggagcgga      4020
     tcgggacggt catgtacaac gtgtggttac cagaccgtca gcagctgatc agatcccaca      4080
     gcaaccagtt gcgcaaacgc cacggtggtg cttacgccac tgaagcggag tctcaaccaa      4140
     ccattccact ggatctgcta ctcaacacgt ggggcatcaa acctcccggg ccatcggagt      4200
     ctccggaacc ggcgggttca ccggaagctt cgctgccgta cccggacagc ccactgacgt      4260
     atcctgagga tgagcagctg aacgagttgc agcaggagtt cctccgcgag ttgatgcagc      4320
     cgcccgagcg acgtcgtcca agacgacccc aatcgccagc tgttcctgcg gtggctcctg      4380
     ccggacgacc agtccgcaac cggaaagcgc cgagtcgcta cgagccgtac catctatact      4440
     aaagggggag g                                                           4451
//
ID   Gypsy-32_CQ-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   AAWU01031813;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_CQ_;
KW   Gypsy-32_CQ-I; Gypsy-32_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-215
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 444-444 (2011).
XX
DR   Genome; AAWU01031813; Positions    6514    6728.
XX
SQ   Sequence 215 BP; 57 A; 59 C; 47 G; 52 T; 0 other;
     tgttgggtga gcaccctgca ccacactctg cgacagggtc gcccggacgt caacagctgt        60
     caacaccagc cagcgagcgg aagcgagctt ggctgtcatt actcgcccga cagccgacaa       120
     ctacaccacg cggaaatatt ttaatttgta gttttaccgt aataaaagta attagtttgt       180
     tgtatagtac cacctcgcgt ttcactatta caaca                                  215
//
ID   Gypsy-32_DAn-I repbase;    DNA;    INV; 5660 BP.
XX
AC   AAPP01015675;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DAn_;
KW   Gypsy-32_DAn-LTR; Gypsy-32_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5660
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015675; Positions 1052967 1058626.
XX
CC   Positions [4753-5229] - Integrase core
CC   'ACTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           821..2326
FT                 /product="Gypsy-32_DAn-I_2p"
FT                 /translation="MAVRRSLENIPALSQPRESHICTICNEANEEAEWTIT
FT                 ACRHQFHLRCLTTWLETNATCPLCRRACSRSELGNPEAGEARQLIEVVPST
FT                 GNSPRTGTIPRTRPQTRQGSRNNRVATAIPRVTRNTMQNPERANHTRSSSA
FT                 GNGVSEERVHQIIAGALENQMSSLAASISNQISATMANLNLGPSRRGSRGE
FT                 IPLEWDNEVPSFVSRGNPPRDNFRENIPSRNRLSNHSVDRPDRVSSVISNW
FT                 NLKFSGSNGEIPIEDFIYRVNILTTQCLDGNYDLLFQFANLLFTGPALKFY
FT                 WRVHRSPDLTNWFCLCDRLKERYQDQRSDRDIKESLRRRKQGNTETFDDFL
FT                 DSMLGIADALRDPLSDSEITEEVRHNLRAELKHELLHVPTPTLAALRTECH
FT                 RHEEFFKGFRNRAVPRTNTRPSLNEIQFINQTEEDFDGDQESNEVCAIRST
FT                 DKIKCWNCDEIGHRYQDCLKTRRIFCYGCGSINTYKPNCSKCHPGSENRSQ
FT                 DIRQNH"
FT   CDS           2278..5595
FT                 /product="Gypsy-32_DAn-I_1p"
FT                 /translation="MSSRVGKPISGYSPKPLGEYPFQISEPIKSELDEDEL
FT                 NVNPIKFTPYHRRLDKPLSDGENKDSLTASRVKSRSAERIQNYFRNVRELK
FT                 KVVISSLLHKHNDIRPFSQIQILGQPYLALLDSGANKSVIGGALAKRILAE
FT                 KNNFESRKGMVKTADGQMQNIAGVITVSLTFNTKHDSIEFLIVPSINQDVI
FT                 CGMDFWKKFGISLSLVGNISEINQTEGETEKDQIHLSPSEKRRLKSVINSF
FT                 PSFEVDGLGKTSLVEHSIDTGEAKPIKQRFYPLSPAREKLLCEEIDRMITQ
FT                 DVIEEAPSSAWSSPVTLLVKPNKVRFCLDARKLNSVTIKDAYPMPILEGLL
FT                 SRLPPVHCISKIDLKDAFWQIELDSQSRAKTAFTVPNRPLYQFKRMPFGLS
FT                 NAPQTLCRLMDMVIPYNMKSHVLVYLDDLLVLSSTFEDHLKHLAEVAVQLR
FT                 KAGLTINVAKSQFGLKQVQYLGFIVGEGTLQTNSEKVRAVAEFPVPNTQKQ
FT                 LRRFLGMTGWYQRFLSQYSTVIFPLTELLGKKAFKWNEQAQSAFEEIKKRL
FT                 CSAPLLMHPNYEKPFIVQCDASFHGVGAVLAQLDDNNVERPIAYMSKKLNK
FT                 AQRNYTVTEIECLAVVLAVLKFRMYIEGHPFKIVTDHASLRWLMKQTDLSG
FT                 RLARWALKLQRYTFQIEHRKGSQNIVPDALSRSFEEPDAVNAIEVELSPTI
FT                 DLTSSAFQSEEYTALKDKFIEAGLPDFQVIDNFLYHRNCFSTTGNRDEVWK
FT                 LYVPTALREDVIRSSHDQPSSAHGGVAKCLERIRRNFFWPGLASDVRQYIA
FT                 KCELCRTSKYPNHSQRPPMGSQIISERPFQRLYIDFIGPFPRSKKGNIGIF
FT                 IILDHFSKFTFLKPVRKFSSQIIIDFLRDEIFACFGVPESIVSDNGSQFKS
FT                 HEFAAFLTKYGIKHICTASYAPQANAAERVNRSINAALRTYVRHNQREWDI
FT                 ILPSINCALRNSIHQSVGADPYRIVFGQYMITHGKDYTLLRKLDLLNSGAG
FT                 HIEREDEFTNIRDDIGKYLKRAFSKNRRTYDLRARPKSFEVGEEVIKRNFQ
FT                 LSNLASNFNAKLGLIKARIKQKVGSAIYRLEDLKGKELGNFHAKDIWKA"
XX
SQ   Sequence 5660 BP; 1745 A; 1118 C; 1193 G; 1604 T; 0 other;
     gaattatggc gcccaacgtg gggcaacgac gtggctttaa ttatccttta aggatattcg        60
     aaaatataaa gttgcaatgc ccgatttcct ttaacctttt cttaccccga atagtatttt       120
     tttttgtttt ttttcctctt cattcaaagt caattcttta acttcttttt tttgtttgat       180
     taggtttttt ttaattgaga ttgttcatgc tcctaagctg ggagtgtgtc cctcttcaag       240
     gaagttaatc aaacaaattt ctatagtatt tttttttgtg gagattttgt tttttttgat       300
     tgagattgct caggcttcgc aagtatggag tctgttcctc ttcaaaaaca agcgaaactc       360
     cagtagtaat tgttcattcc ggttttattt ttatatttcg acttgaattg agattttttt       420
     tgttttcgca agctggaagc ggattactct tcaaggaaga aattcattta aattttatta       480
     gaatcttttg gtcatttttg gattgagatg gtacaagctt tggacgaacg gagcttttcc       540
     ctctccaaat aagacatttg aaattaaata aataatttta gttccttggc taggaagaat       600
     aaaataaaat aaataggctt ttaactaatg gcgagagttc tgaaggataa gtcccaattc       660
     aaatttataa acaataattt gataacgaaa attgataatt cacctttatt gatcaacagt       720
     acccatacat aattaatttc tttacgtaac aaaacatcca ttaccccact aaaattatta       780
     tgcaaattta aagtaacaat tataataatc attcaatatc atggcggtta gacgaagtct       840
     tgaaaatatc cctgcattgt cacagcctag ggaatctcat atttgcacca tttgcaatga       900
     agctaatgag gaagcagaat ggactataac cgcatgtagg catcaattcc atttgaggtg       960
     tctcacaacg tggcttgaaa ccaacgccac ttgtccactc tgcagaaggg catgtagtag      1020
     aagcgagtta gggaatcctg aagcaggtga agcccgacag ttgatcgagg tagtgccatc      1080
     gactggcaat agtccgcgta caggcaccat tccgcgtaca cggcctcaga ccaggcaggg      1140
     ctctcgtaat aatcgagttg ccaccgccat tcccagggta actcggaata ccatgcagaa      1200
     tcccgaaagg gcgaaccata cgcgaagttc ttcggctggc aacggcgtct cagaagagcg      1260
     ggtacaccaa ataatagcag gggccttaga aaatcagatg tcgagcttgg cagcgtcaat      1320
     ctctaatcaa attagtgcca caatggcaaa tttaaatctg ggtcccagtc gtagaggatc      1380
     acggggcgaa attccactcg aatgggataa tgaggtaccc agttttgtgt ctaggggtaa      1440
     cccacctcgc gataatttcc gagaaaacat tccctcaaga aatcgtttaa gcaatcactc      1500
     agtagacaga ccagatagag tatctagcgt aatttcaaac tggaacctca aatttagcgg      1560
     atccaatggg gaaatcccta tcgaggattt tatatatcga gtgaatattt taaccactca      1620
     gtgtctagat ggaaattatg atttgctgtt tcaatttgca aacttattat ttacgggtcc      1680
     ggcattgaag ttttattggc gagtacatcg gtctcccgat ctcacaaatt ggttttgttt      1740
     gtgtgaccga ctaaaggaaa gatatcagga tcaacgatca gatcgcgata tcaaagaatc      1800
     tttacgacgt cggaagcagg gaaacaccga aacctttgat gacttcctag attcgatgtt      1860
     agggatcgcg gacgcgttaa gagatccgtt gtctgactcc gaaataacgg aagaggtccg      1920
     acataatctt agggcggaat tgaaacacga gttgttgcat gttccaaccc caaccttggc      1980
     ggcgttgcgc actgaatgcc acaggcatga agagttcttc aaaggatttc gtaatagagc      2040
     cgtcccgcga acaaatactc gaccttcgct taacgaaatt caattcatta accagacgga      2100
     ggaagatttt gatggcgacc aggaatcaaa tgaagtttgt gccattcgtt cgacggacaa      2160
     aatcaaatgt tggaactgtg acgaaatagg tcatcgttat caagattgtt taaaaactcg      2220
     tcgcatattt tgttatgggt gtgggtcgat taacacctat aagcccaatt gttcgaaatg      2280
     tcatcccggg tcggaaaacc gatctcagga tattcgccaa aaccattagg cgaatatcct      2340
     tttcaaatct cggaaccaat caaatcagaa ctcgatgaag acgaacttaa cgtaaaccct      2400
     atcaaattta ctccctatca tagacgttta gacaaaccac tatcggacgg tgaaaataag      2460
     gacagtttaa cagcctcaag agttaaaagt cgtagcgctg agcgcattca aaattatttt      2520
     agaaacgttc gggagctaaa gaaagtcgta atttcatcac tcttacacaa gcataacgac      2580
     attcgtccat tttcacaaat acaaatatta ggtcaaccat atttagctct gctggatagc      2640
     ggagccaaca aaagtgtaat aggtggtgct ttagcgaaac gcattttggc ggagaaaaat      2700
     aattttgagt cccgaaaggg gatggtaaaa accgccgatg ggcaaatgca gaatatcgct      2760
     ggagtgatca ccgtatcatt gacttttaac accaagcatg acagcataga gtttctaata      2820
     gtaccgtcaa taaatcagga tgttatttgc ggcatggatt tctggaagaa attcggaatt      2880
     tccttatctt tagtgggaaa tataagtgag ataaaccaaa cggaaggcga aacggaaaaa      2940
     gaccaaattc atctttctcc ttcggagaag cgtcgtttaa aatcggtaat aaattctttt      3000
     ccgtcctttg aggtagacgg gttagggaaa acttctctag tagaacattc tatcgacaca      3060
     ggggaggcca aacctatcaa acagagattt tatcctttat cccctgccag ggaaaaactt      3120
     ttatgtgaag aaattgatag aatgatcaca caagatgtaa ttgaagaagc accttcatca      3180
     gcgtggtcat caccagtaac gctgttagta aaaccaaaca aggttcgatt ctgtctagac      3240
     gcaaggaaac taaattcagt caccataaaa gatgcttatc cgatgcctat tttagaaggg      3300
     ttgttgagtc gattgccacc cgtgcactgt atttcgaaaa ttgatctcaa agatgccttt      3360
     tggcaaatcg agttagattc tcaatcaagg gcgaaaacag cgttcacagt ccccaatcga      3420
     ccgttgtatc aattcaaacg tatgccattt ggattgtcca atgcgccgca gactctctgt      3480
     cgactaatgg atatggtgat tccatataat atgaaatctc atgttctagt ttaccttgac      3540
     gatttattag ttctatcttc aacatttgag gatcatctga aacacttagc cgaagtagct      3600
     gtccaacttc gaaaggcggg gttgaccata aatgtcgcga aaagtcaatt tggcttgaaa      3660
     caagtacagt acttgggttt catagtagga gaaggaacgt tgcaaaccaa ctctgagaag      3720
     gttagagcag tagccgaatt tcccgttccc aatactcaga aacagctaag gcggtttttg      3780
     ggaatgactg gttggtacca gcggttctta tcccaatact ccaccgtaat atttccacta      3840
     acggagctct taggaaagaa ggcgttcaaa tggaatgagc aagctcaatc cgcatttgaa      3900
     gaaataaaaa agagactttg ttcagcacct ctattaatgc accccaacta tgaaaagcct      3960
     ttcattgtcc aatgtgacgc atcttttcat ggagtgggag cggtactcgc tcagttagat      4020
     gacaacaacg tagaaagacc aattgcctac atgtcaaaga aattaaacaa ggctcagcgt      4080
     aattataccg taaccgaaat agagtgtttg gctgttgttt tggcagtttt gaagtttcga      4140
     atgtacatcg aagggcatcc tttcaaaatt gttacggatc atgccagttt acggtggtta      4200
     atgaaacaga ccgatcttag tggtagattg gcccgatggg cactcaaatt acaacgatac      4260
     acctttcaaa ttgaacatcg aaagggatcg cagaatatag ttcccgatgc gctttctcgt      4320
     tcttttgaag aaccggatgc ggtaaatgct attgaggtag agctttcacc aacaattgac      4380
     ttaacgtcca gtgcctttca atccgaagaa tacacggcac taaaagacaa gtttatcgaa      4440
     gccggattac ccgatttcca ggttatcgac aatttccttt accatcgaaa ttgcttttcc      4500
     acaactggaa atagagatga ggtttggaaa ttgtacgttc caaccgccct gcgagaggat      4560
     gttatccgct ctagtcatga tcagccttct tcggcacatg ggggcgtagc caaatgtttg      4620
     gaacgtatcc gacgaaattt cttttggcca ggattggctt cagacgttcg gcaatatatt      4680
     gcaaaatgtg aattgtgtag gacgtcaaag tatccaaatc atagccaaag accacctatg      4740
     ggaagccaga tcatcagtga acgacctttt caaagattgt atattgattt tatagggcct      4800
     tttccacgat cgaaaaaagg caatataggt attttcatca ttcttgatca tttttccaag      4860
     tttacttttc taaagcctgt tcggaagttt tcgtcccaga tcattatcga cttcttaagg      4920
     gatgagatct ttgcgtgttt cggagtgccc gaatccattg taagtgacaa tggatcgcaa      4980
     ttcaaaagtc atgagtttgc agcctttctt actaagtatg gtattaagca tatctgcact      5040
     gcatcgtatg cccctcaagc taatgccgcc gaacgagtta atcgctccat taacgcagcg      5100
     ctccgaacct atgtacgtca taatcagaga gagtgggata tcatcctgcc cagtataaac      5160
     tgcgcgttga gaaactccat acatcaatca gtcggagctg atccttaccg tattgtgttt      5220
     ggtcagtaca tgataacgca tggaaaggat tacacgttgc ttaggaagtt ggatctgtta      5280
     aatagtggag caggacatat agaaagagaa gacgaattta caaacattcg tgatgatatt      5340
     gggaaatact taaaaagggc attctcgaaa aatagaagga cgtacgatct gagagcaaga      5400
     ccaaaatcgt ttgaagtagg ggaagaggtg attaaacgaa attttcagct tagtaatttg      5460
     gcatcgaatt ttaatgctaa attggggctt atcaaagcca ggataaaaca gaaagttggc      5520
     tctgccattt atagattgga agaccttaag gggaaggagc taggcaattt tcacgctaag      5580
     gatatctgga aggcctaatt ccaactcgcc gacctttttc agcttttatt taggcatgaa      5640
     taccaaaata aaacctgtga                                                  5660
//
ID   Gypsy-32_DAn-LTR repbase;    DNA;    INV; 1446 BP.
XX
AC   AAPP01015675;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DAn_;
KW   Gypsy-32_DAn-LTR; Gypsy-32_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1446
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015675; Positions 1051521 1052966.
XX
SQ   Sequence 1446 BP; 481 A; 314 C; 209 G; 442 T; 0 other;
     tgtgggggtc gctcgctggt tcaaagccaa aacaaaacaa aaaaaaagta atttaaaaat        60
     tttttagaaa aaaaaaaaaa gaaaacaaaa atagtaaaca aaaaacatat ggtcttattt       120
     acctcttgaa cccaatgcag ctaattaaaa atatcgatag gctcagctga ccccaattga       180
     cattcacccc ccaccacagc tgctcccctt tttgggaatt cacccaccca cgtaagcacc       240
     tgtcaaaaag tgacaatccc aaaagatgca tttcctgtct gccacctgat ttcactttta       300
     ttctgaatct cgctgcgggc agacctgtgc atctgtggat aaaaattatt aaaccagtga       360
     cttaacctcg tggaggagaa aattagtgtg tgattttttt ataagaatag aggtgagaaa       420
     atattgagct ccttgccatt ccctgcattg gcttagtgtt tattttcccg tttagcggat       480
     ttttgttgct ggatgaccct cgatgcccgt ggatttggag gcaccacctg gcccaacctc       540
     ggcatccatc ataagcacca gcatcaccac caagcttcag ggattatttt tacgacccgt       600
     cgccgaaatt ccgccggcaa catcaacccc tctgcctgtg gagtcttggg tcttttttta       660
     tgtatttttt ttatataaaa aaaaattaca aatatcacgt aactacaact attaaatatc       720
     cccgcgagag aggacaaaaa tccagcaatt tcgaataccc tttaaacttc aaaattcaaa       780
     ttaaaaattt caattttcaa atcctataat ttaccaaatg aaaaagaaga aaaaaaagga       840
     aaacctaaaa atccataatt atcaattttt atatcatttt ctgaaaagtc ttgaattatt       900
     atttctaagc aatccaattt aaaaaaaaaa attttacttg ttaagcccca aacctgaatt       960
     attatcttta attatcttta attaacttta agtatcttta attattatta tctttactat      1020
     tgaattgttc taaataccgc cacattaata tcaattgtca tcgaaaatat cttttatggt      1080
     taatgaaaac caccttatgt taatttattt tataagagat tttcctgaat tataacgtta      1140
     actaaaatga atttatatta gaccttttgt ttgggcaccg gaagtaatct cgccacccat      1200
     gcagttaaac aacagttagc cacctcaaac atcttagcca aggaattttc tttttttttt      1260
     tctacacccc caacacaatg ctatttagga atccttctcc caggaccctt cctattcgat      1320
     ctacgacgat tcgcgtgacg accatgtcca aactgaaggt acaagaacca ctcccacttt      1380
     ccctgagcac ggctggagcc tgttagtaga tcgaagtacc ttcaggacat gtgccaaacc      1440
     gttaca                                                                 1446
//
ID   Gypsy-32_DEl-I repbase;    DNA;    INV; 5495 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5495
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 473-473 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon, and can include LTR.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(906..2315,2246..4711,4702..5349)
FT                 /product="Gypsy-32_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSFPGPYRETKHELDSDSEEELIRDTRRYQPARAQQE
FT                 SNAETMNATQIEALIQAALTSQEQRLRAEFAGQINAVNQQLQSLRIEAPEV
FT                 ESYQRVKVVPGAPQCDIPLHIVKSIPDFTGIQDEYVAWRQSATDAYELFES
FT                 YEGSSAHYQAVTIIRNKIKGPARALLVSYNTVLNFKAILARLDCSYADKTS
FT                 LRLLRQGLESVRQGDQTLMQYYDEVEQKLTLVTNKIVMTHDDERASLLNTE
FT                 VRADALHVFISGLKKSLRAVVFPAQPKDLPAALALAREAEASIERSMFAAT
FT                 YAKVAEQRNQNTDFHKGQHRAPEKQGKNPGADRGPEKNPHFFKKPNKYQNN
FT                 DTWHKRDNWVDQGKQNQSLEPMDIDPSSSKVRHPTGFKQGNNTQYQNLQNL
FT                 KRPNSSERMTGQRRQRVNNVEQTASAGETQDYESAATAALNAIDDDSDSFD
FT                 GNDLVNFLEEGPACPSLSEGWRGKLRPRQFFRGRSRLPFIERGLAGKTIRI
FT                 LIDTGAAKSYVKPLKELKNIMPVDSPFTVSSIHGSSNIKEKCFMRIFGLKA
FT                 QFFLLDTINTFDAIIGFDLLTQAGAALDLHNSVIRYGNISEKLKYHECDNV
FT                 NFTNIDDLVVPNSVKAAFKKMILKRKQVFSHSNEALPFNTSIIATIRTETS
FT                 EPVYSKLYPYPMGAADFVNTEIKQLLKDGIIRPSRSPFNSPTWVVDKKGLD
FT                 ADGNKKKRLVIDFRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSG
FT                 YHQIYLAEKDREKTAFSINGGKYEFCRLPFGLKNAGSIFQRAIDDVLREQI
FT                 GKICYVYVDDVIIFSENAADHVIHIDTVLKCLCEANMRVAPEKTKFFKESV
FT                 EFLGFIVTSNGAKTDPEKVKTIQEYTEPKNLFSLRSFLGLASYYRSFVKDF
FT                 ATIARPLTSILKGENGTVNKHMSKKVAIEFDESQRRAFERLRDILSSEDVI
FT                 LTYPDFKLPFDLTTDASASGIGAVLSQKGRPITMISRTLKDCELNYATNER
FT                 ELLAIVWAIGKLQNYLYGTKEIRIFTDHQPLTFAVSERNTNAKIKRWKAFI
FT                 EEHNAKVFYKPGKENFVADALSRQNINAIQNEPQSDVATIHSELSLTYTVE
FT                 STDKPLNCYRNQIILEEAEQPLRRHFIVFGTKNRHIIQFNNRDSLFELVKE
FT                 VVNVDVVNAIYCDLSALACIQHSLVTEFPATKFWHCKKFVNDITDANEQKE
FT                 IIICEHNRAHRAAQENVKQVLQDYYFPNMSKLANEVVVNCKTCTKGKYNRH
FT                 PKKQELGITPTPSYAGEMLHIDIYSTDKRFFEIFLTCVDKFSKFAVVQPLL
FT                 SRAIVDVRSPILQLINFFPNIKTIYCDNEASFNSETITSLLKNQYNIDIVN
FT                 APPLHSSSNGQVERFHSTLTEIARCMKIDQKVDDTVELIMRATVEYNKTIH
FT                 SVTRLPPKQALHSANAEQKLAIISNIEKAQQANLDRCNPTRQNRIFEVGEK
FT                 VYLKNNKRLGNKLTALYTEERVQADMGTSVLIRGRVVHKDNLR"
XX
SQ   Sequence 5495 BP; 1845 A; 1225 C; 1123 G; 1301 T; 1 other;
     tatatatgtt aacactgtta aggagtaatc ataagtcgat acagatcttg ggtgattatt        60
     ggatcaccct agtgtttagt tgcaaaatca gcataaacat ctttaggggc cgtgcctggt       120
     tcttggcggt gcacggtatg gtgagttatg ttgattttgc tagtgtcagc actttgctgc       180
     acgagcggtc ggcttgccgg ccgcgcatag cttacgtaaa gtcatatatg ttttcagttt       240
     taatttggac atttaataaa gagcattggc ttgaatgtaa aactccggca gtggccgtca       300
     acacttactc tattaattga aattggttat cgagccttaa gggccgttag caacggagtc       360
     agttactccc aacgtagtct tcgtaagaag agagaagaga gccattggca accgcccggc       420
     acatccatat gagcagccag ccacggtggc aattacgtct tcaccccttc ccccggacca       480
     gccacggtgg caattggatc gcaactcttc accctcacgg acagcggcga gggacagtgc       540
     gaggctgcac aactaaaaca taattggcac ccaactttaa taccgaatcc gcgacacaaa       600
     aatatgtaag tgggctgatc aaaattaata cagtaaaact tcaaatacac atacagggaa       660
     aaataaataa aaatccctac aaactattta cccaaaatta aaaaatatac agtttgaata       720
     aagcaattgt aaaggtgact tacaaataaa gtgaattaat atcggccgtc cctaaataaa       780
     attttccttc ggacgccaag cacccagtta ttaatataaa attataatat acaaaattaa       840
     tttgtcgaat taaaacattc ggcctcccaa taacgtgtgt ttagtgtcaa caaattagtc       900
     gccttatgag ttttccaggc ccatataggg aaactaaaca cgaacttgac agtgacagtg       960
     aagaagaatt aatccgagat acccggagat atcaaccagc acgggcacaa caagaaagta      1020
     acgcggaaac catgaacgcg acacaaatag aggcgttaat tcaggccgca ttaactagcc      1080
     aagaacagag gctcagagcc gaattcgcgg gtcagatcaa cgccgttaac caacaacttc      1140
     agagcttgcg tatagaagcg ccagaggtag aatcttacca gagggtaaag gtagtaccgg      1200
     gagcaccaca gtgcgatata ccattacata tagtgaagtc gattccagat tttactggca      1260
     tacaagatga gtacgtggca tggaggcaat ccgccactga tgcctacgaa ttattcgagt      1320
     cttatgaggg cagttccgcg cattaccaag ccgttactat tattagaaat aaaattaagg      1380
     gaccagcgcg cgcactgcta gtttcttata atacagtgct taattttaaa gccatactag      1440
     ctagattaga ctgctcctac gcagataaaa catctttgcg cctattacgg cagggacttg      1500
     agtcggtccg tcagggcgac caaacactta tgcagtacta cgatgaagtc gaacaaaaat      1560
     tgaccctcgt tacaaacaaa attgtcatga cacatgacga cgaaagggct tcattactca      1620
     atacagaagt tagggctgac gccctacacg tattcatttc cggtctaaaa aaatcactaa      1680
     gggctgttgt atttccagca cagccaaaag acctgccagc agcactggca ttagctagag      1740
     aggcagaggc cagtatcgaa cgaagtatgt tcgcggccac atatgccaaa gtagctgagc      1800
     aaagaaatca gaatactgat tttcacaagg gccagcaccg agcgcccgag aaacaaggga      1860
     aaaatcctgg tgccgaccgc ggaccagaaa aaaatccaca tttctttaaa aagccgaaca      1920
     agtatcagaa caacgataca tggcataaac gggacaactg ggtagatcag ggtaagcaaa      1980
     atcagtccct ggaacctatg gacattgatc catcatcttc taaagtccga catcctacgg      2040
     gtttcaaaca gggaaacaac actcaatacc aaaatttgca gaacctaaaa agaccaaact      2100
     cttcggagag aatgactggc caaaggcgcc agcgggttaa caacgttgag caaactgcaa      2160
     gcgcgggaga aactcaagat tatgaaagcg cggccacagc cgcactaaat gcaattgacg      2220
     atgacagtga ctcatttgac ggtaacgacc tcgtcaattt tttagaggaa ggtcccgctt      2280
     gcccttcatt gagcgagggc tggcggggaa aactataaga atcctaatag acactggagc      2340
     ggcaaagagt tatgtaaagc ctttaaagga gctgaagaac ataatgcctg tcgactcccc      2400
     tttcactgtg agttccattc atggctccag taatattaaa gaaaaatgct ttatgcgcat      2460
     attcggccta aaggctcaat tttttttact cgatactatc aacacttttg atgccataat      2520
     aggtttcgac ttgctaacgc aggcgggagc ggcattagat ttacataaca gtgtaatcag      2580
     gtatggaaac atatctgaga aactcaaata ccacgaatgc gataacgtga acttcacaaa      2640
     tatcgatgac ttagtagtcc caaattcagt gaaagcagca tttaaaaaaa tgatccttaa      2700
     gaggaaacaa gtgttttcgc actctaacga ggcgctacct tttaacacct cgatcatcgc      2760
     cacaattcgt acagaaacta gcgaaccagt atattccaaa ctatatcctt accccatggg      2820
     agcagcagat ttcgttaaca cagaaatcaa acagctgtta aaggatggca ttatccggcc      2880
     ttctaggtcg ccatttaaca gcccaacatg ggttgtagac aaaaagggac ttgatgcaga      2940
     tggcaacaag aaaaaacggc tggtgatcga tttcaggaaa ctgaatgaac gaaccatcgc      3000
     cgaccgttac cctatgccaa gtattcctat gattttagcg aacctaggaa aggcaaaatt      3060
     ttttactacc ctagacttaa aatcggggta ccaccagatt tatctggcag aaaaagaccg      3120
     tgaaaaaact gctttctcca taaacggagg aaagtatgaa ttttgccgtc taccctttgg      3180
     actgaaaaat gcgggaagca tctttcaaag ggcgatcgac gacgttctac gtgaacagat      3240
     cgggaaaatt tgttacgttt atgtagacga tgtgataatt ttctccgaaa acgctgctga      3300
     ccacgttata cacattgaca cagtccttaa atgcctgtgc gaagccaaca tgagagtggc      3360
     accggaaaaa accaaattct tcaaagaaag tgtagaattt ttaggtttca ttgttacatc      3420
     aaacggagcc aaaacggacc cggaaaaggt aaaaaccatt caggagtaca ccgaaccaaa      3480
     aaatttattc agcctcaggt cttttttagg gttggccagc tactacagaa gttttgtcaa      3540
     ggactttgct accatagcca gaccacttac ctccatactt aagggagaga atggcacggt      3600
     taataaacac atgtcaaaaa aggtggctat cgaattcgat gagtcccaac gcagagcgtt      3660
     cgagcgcctg cgagacattt tgtcgtcaga agatgtgata ttaacatatc cagatttcaa      3720
     acttcctttc gatttgacca ccgatgcctc agcaagcggt atcggcgcgg tactgtccca      3780
     aaaaggcagg ccaatcacaa tgatatctcg tacgttgaaa gactgtgaac tcaattacgc      3840
     aaccaacgaa agagaattat tggcaattgt ttgggctata ggaaaactac aaaactacct      3900
     atacggcaca aaagagatca ggatttttac ggatcatcaa cctcttactt ttgctgtatc      3960
     cgagcgaaat acaaatgcca aaattaaacg atggaaggca ttcatcgaag aacataacgc      4020
     caaggtattc tacaaacccg gaaaagaaaa ttttgtggcc gacgctttgt cacgacaaaa      4080
     cataaacgct atacaaaacg aaccccaatc tgacgtagcc actattcata gtgaactttc      4140
     cttaacctac acggtcgaat ccaccgataa acccctgaac tgctacagga atcaaataat      4200
     cctggaggaa gcagagcagc ctttacggcg acacttcata gtgttcggga ccaaaaaccg      4260
     acacataatc caattcaata acagggactc gctgttcgaa ttggtcaaag aggtagtaaa      4320
     cgtagacgtt gttaacgcca tttactgcga cctctccgca ctagcatgca tccaacattc      4380
     cttggtgacc gaattcccag caaccaagtt ttggcattgc aaaaaattcg tgaatgacat      4440
     cacggatgca aatgaacaaa aagaaataat tatctgcgaa cacaaccgcg ctcacagggc      4500
     agcccaggaa aatgttaaac aagtccttca ggattactac tttccaaata tgtccaaact      4560
     cgccaacgaa gtggttgtaa actgcaaaac atgcaccaag gggaagtaca acagacaccc      4620
     caagaagcaa gagctgggta tcacaccaac cccctcatat gctggcgaaa tgctgcatat      4680
     agacatatac tctacggata agagattttt ttaacctgcg tagataaatt ttcaaagttc      4740
     gctgtagtac agccattact ttctagggcc atagtcgatg tgcgcagccc catattacaa      4800
     cttataaatt ttttcccaaa cattaaaaca atatattgtg ataatgaggc atctttcaac      4860
     tcggagacaa taacctcatt attaaaaaat caatataaca ttgacattgt taatgcaccc      4920
     cctctacaca gcagctcaaa tgggcaagtg gagcgattcc acagtaccct aactgagata      4980
     gctaggtgca tgaaaatcga ccaaaaggtt gatgataccg ttgagcttat tatgagagcc      5040
     acagtagaat ataacaagac aatacattca gtgacaagac taccacctaa gcaggccttg      5100
     cactcagcta atgccgaaca gaaattggca ataataagta atattgaaaa ggcgcaacag      5160
     gccaatctag atagatgcaa ccctaccagg caaaacagaa tttttgaggt aggagaaaaa      5220
     gtatacctca aaaataacaa gaggttagga aataaactta ccgcactgta cacagaagag      5280
     cgtgtacaag cagacatggg aacgtctgtc ctcattagag ggagggtggt ccacaaggac      5340
     aaccttagat aaaatacccc tcaactcttc ttaccttttt taccctattt tcatatacac      5400
     tacaccttag atacttactc cagtttatac acagtagatt taacctttcg cttgtttaca      5460
     ggatcgcggg aattttattg ataacgttga mtgta                                 5495
//
ID   Gypsy-32_DMel-I repbase;    DNA;    INV; 5232 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5232
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A putative element from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3893..4819,4791..5198)
FT                 /product="Gypsy-32_DMel-I_2p"
FT                 /translation="AILRTHVNPYFLLFPNFISLLLAHVACCFPIFKYDSP
FT                 VVPLQQGTIWRVNGVFKLAHIIDLARIQQLIGLLDEEVAEMTDIRMATLIT
FT                 RYLEDESEGIRRLTRTRSARSKEWLGSAWKWVAGSPDAADWNAILKAQNDV
FT                 IANTDQQIKINTRLFDSTHESVQQSNKMVERVNMIDGDLHATASTLHRAII
FT                 QANQVGEVIRASQLAKTGTVNLNLLDYEEEETILSEVNNLPYQNTIEAIEF
FT                 TRPSVMTNGTMLLYILAFPKATAELNRFISDTETYAVLGDCLSIGNTTVCQ
FT                 EKDLLRLKENDCIPRLLRKTTASLDYCKYLRNDQEVAYLIDDGTLLLSNFN
FT                 GSVTFNTKKHHLVGSFVVQFSKETITVGNQNYTSYSTTHLMAMPAVLTHVT
FT                 ATDYKLSLEYVHEVCNQNLQRKVTSPTGIPKTDSTPLVLEALTTSSPPRPL
FT                 "
FT   CDS           join(933..1247,1251..1553,1557..2075)
FT                 /product="Gypsy-32_DMel-I_1p"
FT                 /translation="VFEGQPGAYISWVNRAQSILNEYEVIKSKPLYRSIVL
FT                 HIRSKIRGNADTSLWDYGIPDDGWEGIKSTLSLNFADKRALRTLEHQLNRL
FT                 NQGTQTLDKFYMEVNIPFSLILNNLRNSNRKPVVVNALIETNRGKALDVFI
FT                 SGVNGDCGGWSVTKGPCLRVIPFVSSSKMFCQELVPAPRLGIIGFHSLLNI
FT                 INLDSPALIRAMADPRTVPMFMFSTLNGKYDFLRLPFGLTNAPCIFQRMID
FT                 DMLREHIGKICYVYIDEFIVVSKDYDSHWINLRFVLNSLKEARLQINLKKT
FT                 KFLSTQVEFLGYLVNSEGIKAYRKKVDAIMKMNQSKRVPIDLNEEALQAFS
FT                 DLKSILSSSEVLAFPNINKPFHLTTDASNYAIGAVL"
XX
SQ   Sequence 5232 BP; 1714 A; 1148 C; 1070 G; 1300 T; 0 other;
     ggcgcccgaa cagtcggcaa acccgactag tgcatacgtg tgttgtgttt aaaaaaaaag        60
     aaagaaatcg ttgattcgtt gaataaagga aaaaacgaat aaaaaaaatc attcgccggc       120
     ataacacgac gcgcttaaat acaaaataaa tcaataaacc aaaaaccgcg gctgcaattt       180
     agttgcgagc ggcccaattt tatgacaaaa aacatgaaat taaagtataa agtggtgagt       240
     ggcagtctac tggaaaggct aagaggcgcg gaatgcgccc caaaaaagct gtccagttgt       300
     ctgtaaggca accgtacctt agtaggctat gtgccaaaaa ggactcctat ggaccttcgc       360
     gcccggtgcc ccaatgaaca atgcccaaac acgatatttc tgtaccacta aaagtcgaag       420
     aggaaaaaaa atgaattgtt aaatgtttaa gcaatatgca aattatgcga tcttactaat       480
     cacttttcct ttccttgtca gattatttca aatttaagag gagtagacag cctaaaagga       540
     aacttgtaca acggtgagtg ccaacaattt tttaagctta aggagttttt ttaaaatttg       600
     ttaacccaaa tttttaacct tgtggcccta cgtttaaaaa aacatttaaa aagaaaaaaa       660
     aaactggctg aaaatttggc cattaattgc attgcgtcat tgttagattg taaattcttg       720
     taccgtcttt cataatggaa gaaatcaaag aaactctcag taaatttaac ggttacagaa       780
     gagaatacga atttgagcgc taggttgctt acattagaag gagattacga aaccaggaat       840
     tctgtcggaa tctaagagac accactggcc aaagcacgta atacgagttg agggaggcct       900
     cgactttacc cgattgcgtt caggagctgt aggtatttga gggtcagcca ggagcttaca       960
     tatcttgggt caacagagcg cagtccattc taaacgagta cgaggtaatt aaaagtaaac      1020
     ctttatatag gtcaatcgtc ttgcatatca ggagtaagat taggggtaat gccgacacgt      1080
     cattatggga ttatggaata ccagacgacg gttgggaggg aattaaaagc accctttccc      1140
     tcaatttcgc cgataagagg gctctccgta ccctggagca tcaattaaat agactaaatc      1200
     agggtaccca gaccttagac aaattttata tggaggtaaa tattccttaa ttctccttaa      1260
     tcctaaacaa tttgaggaac agtaatagga aaccggtcgt tgtgaatgcc ttgatcgaaa      1320
     caaatagagg caaggcgcta gacgttttca taagtggcgt caatggagac tgtggtggtt      1380
     ggtccgtaac caaaggaccc tgcctgaggg ttattccttt tgtttcgagt tccaaaatgt      1440
     tctgtcaaga gctggtgccg gccccacgtt tgggaataat aggatttcac agcctgctca      1500
     atatcatcaa cctagactcc ccggcactta tcagggctat ggcagacccc cgctagacag      1560
     tccccatgtt catgttctct accttgaacg ggaagtatga cttcctgcgc cttccttttg      1620
     ggttaacaaa tgccccctgc attttccaac gcatgattga cgatatgtta agagagcaca      1680
     ttggtaagat atgctatgtc tatatagacg aatttatcgt cgttagcaaa gattatgata      1740
     gtcattggat aaacttgcgc ttcgtcctta acagtcttaa agaagcaagg ctccagatta      1800
     acttaaagaa aaccaaattc ttatcaacac aggttgagtt tctcggttac ttagttaatt      1860
     cagaaggtat taaggcgtat cggaaaaagg tagacgcgat aatgaaaatg aaccaatcaa      1920
     agagggtacc aattgatttg aacgaagagg ctttgcaggc tttctctgat ctgaagtcta      1980
     ttctgtcttc ctcggaagtt ttagcatttc ccaacataaa caagcccttc catcttacga      2040
     cagatgcctc caattacgca atcggggctg ttctttaaca ggaggaacac gggagggata      2100
     gaccaatagc ttttatctca cgatctttag gtaaaacata gaaaaagtac gccaccaatg      2160
     agaaagagat gctcgctata gtgtggacgt tcgttcttat ttgtacggcg ctggctgtat      2220
     caaaatctac accgaccacc aaccccttac gtttgctcta ggcaaccgga acttcaatga      2280
     caaactaaaa cgctggaagt cccggattga ggaatataat tgcactatgg tttataaacc      2340
     aggcaaatcg aatctagtcg cagacgcact ttcacgtatc cctatgcagg ttaatcactt      2400
     agaatccgac accgcaaccg cagctaatac cacacgtcga gaatccgatt aacgtctaca      2460
     gaaaccagct ggtctttgat gcatctgtga ccgaatatac ttgtactcaa ccacatgctg      2520
     gctacgcccg ccacacgatc cgtgtcaaca atcagacgag aaggcagctt gacactctcc      2580
     tgagagcata cttgaagcaa gttattatca atggcgttaa aatcccagac gaccttttgc      2640
     aagatttcca aacttactgt tcttccaatt ttagcagtta taaaatacgc atgacgcaaa      2700
     ggtgagtatt ggatttagat gacagcgacg agattcgcga agtcatcgag aaggagcatc      2760
     gtcggactca caggggccca gcagaagtaa aaatgcaact gttggaaagg ttttacttcc      2820
     cccgaatggc cagtactata cgagttaaag tgtctgcctg tgaatgctgc aaagcattca      2880
     aatacgaccg ataccctaac aaaccagatt ggcaaccaac ccccattccg agttacccaa      2940
     gtgagatact acacattgat gtattcacct tggagaaaag aatttattta agctaaattt      3000
     gctaagcttt tcccactgga atccaaatca gctatccatt tacgggaaag gttgttggaa      3060
     gccatccact actttactgt gcttagggtc ttagtatccg acaatgaaaa gggtcttccc      3120
     tgtcccacag ttttaaatta cctgagagcg ttgcagatcg aactttacta taccccaact      3180
     cagaggagcg aaatcaacgg acaggtggag aggttccact ccacatttct aaaaatttat      3240
     cgttgcttta aaaacgagct tcctactgtc aaaagggtag attacggtgc acatcaccgt      3300
     tgataggtat aacaattccg tgcattcggt aacaaacaga aaaccggtgg acatactctt      3360
     tgatcgcacg tcaagaatta actaccaagg gttgtcggac tttaaatgac aaaccatgga      3420
     ggatataaga ggcctcattg aacataaaca ggccctggcc attagtggtc ataataggaa      3480
     gagagggcaa cccatacact atacgcaagg caaaggtttt ccataaatca gacgttagaa      3540
     ggtaacgagg agtagcttac agattctgct ctttaatttt tacaaaaaaa taaaaaaatt      3600
     ggcaaagatt tgcaaaaata ttatgcaaat acacgtataa gtaaaacata aacacgagaa      3660
     ataaaacatt acaattaagt cacacaaaca taaataaata aacaaacgag aaaatacaca      3720
     aataaataaa aaatactcca gaactacaag actacgaata aactcaaaga ttgtaaacac      3780
     taacacactt gaaatattgc acactacact aaaatctaag tataccaagc acattccctt      3840
     cataataaca caataccact taagttaact tttgttctac gattaagaat gagctatttt      3900
     aagaacacat gtaaaccctt actttcttct tttccccaat tttataagtc ttttgctggc      3960
     ccatgtcgct tgctgcttcc ccatattcaa gtacgattcc ccagtagttc ctctacaaca      4020
     ggggacaatc tggcgggtaa acggtgtttt taaactagca cacatcatcg acctcgccag      4080
     aatacaacag ctcatcggcc tactggatga agaagtagcc gagatgaccg atatacgaat      4140
     ggccacttta ataacgcgct acttggagga tgagtcagag ggaataagac gattaacaag      4200
     aacacgcagt gcacggtcca aagaatggct agggtccgcc tggaaatggg tggccgggtc      4260
     cccagatgca gcagactgga acgctatatt gaaggctcaa aacgacgtca ttgcaaacac      4320
     ggaccaacag attaaaatca acacgagact cttcgactcc acacatgagt cggtacaaca      4380
     aagcaacaag atggtggaaa gagtcaacat gatagacggg gatttgcatg ccacagcatc      4440
     caccctacac agggccatta tacaggctaa ccaggttggc gaagtcatta gagcatccca      4500
     gcttgccaaa acaggaacag tcaacttaaa cctgctggac tatgaagaag aggagacaat      4560
     tctaagtgaa gtcaacaatc tcccgtacca aaacacaatc gaggccatcg aattcacccg      4620
     cccgtcagta atgacgaatg gtacaatgtt attgtacatc ctagctttcc caaaggccac      4680
     agcggaatta aataggttca taagtgatac tgaaacgtat gcagtgcttg gggattgtct      4740
     atctatcggt aacacgactg tttgtcaaga aaaggacctc ctcagattaa aggaaaacga      4800
     ctgcatccct cgattattgt aaatatctga ggaatgacca agaggtggcc tacctcatcg      4860
     acgacggaac acttctccta tctaacttta acggatcggt gacctttaac acaaagaaac      4920
     atcatctcgt cggttccttt gtggtgcaat tctcaaaaga aacgattacg gtcggcaatc      4980
     aaaactacac cagctattcc actacccact tgatggcaat gccggctgtg cttactcatg      5040
     tgacggccac ggattataaa ctatcactgg aatatgtaca cgaagtgtgc aaccagaacc      5100
     ttcaaaggaa ggtgacttcg cccacaggaa tcccgaagac cgacagcacc ccattggtct      5160
     tggaagcact caccacctct agtccaccta ggcccctctg atctgtggga cacagatctt      5220
     gtgatggggt gg                                                          5232
//
ID   Gypsy-32_DMel-LTR repbase;    DNA;    INV; 499 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-499
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 732-732 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 499 BP; 139 A; 127 C; 119 G; 104 T; 10 other;
     agttaacgac ctgatcccgt cacgagccaa cgacccgcca tagccaagca ccgcccaagt        60
     ccttacgtaa gtccgtaaga ttgcaacttc agcacaagca ccgggatcgg cgccgacgat       120
     caagwgcaat gtaakstttc tcactscggc ttacactctt gcgcccaggt gcaaggtwag       180
     ctttcttact ccggcgcgtg tcgacgaact tacgcagcgt amgccccttg cgcmaacgag       240
     gagctgtagt ggaacttcaa gcgggacggt tagagcagtg tcgatttagc tagcactagg       300
     aacggaacgt tttaaataaa aatckkaatc aattcaacaa gccactaaga cgcatttggt       360
     mcatacccaa ggacatggaa ggttatttca ggtaataaga tcgttccgat ctgtcctaag       420
     ggacaaacat taaagaccat cgtagtggcg atagaagagc agattacgat ggccgccggt       480
     caactgatcg gcgttaact                                                    499
//
ID   Gypsy-32_DP-I repbase;    DNA;    INV; 5705 BP.
XX
AC   super_8;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DP_;
KW   Gypsy-32_DP-LTR; Gypsy-32_DP-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5705
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1543-1543 (2012).
XX
DR   Genome; super_8; Positions 2224054 2229758.
XX
CC   Positions [3386-3808] - Reverse transcriptase
CC   Positions [4913-5389] - Integrase core
CC   'CAGA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           936..2423
FT                 /product="Gypsy-32_DP-I_2p"
FT                 /translation="MSAYNLRSKLKMTRRTPPPGNLQGQMQGGDTQGAEGR
FT                 EDDSWNLPGQSNALPSEILSGVNVAIAQAQETWRGSMADTLSRTLQEEIRR
FT                 GFMELMGAITEVMAPLRQNVELIQDLRLERDQGENNDNNNGDQQPLAHLRQ
FT                 KPNTGTMPKRPKDDDAWNSQSPPRKPARLSQNWRRGIADADQDPGAGRQRR
FT                 ETSGDGGGPTDLPPYERRDDWRGARWGRVDKWEIHFDGDGDPNKMTVQDFV
FT                 FRVEFLRRQNRRSWDEVLDNFHHLVKGQAAEWYWQFVRERPPEGWEDLKDE
FT                 LVSRFRAVGGEFERLRTLHERRQQSGESVEEYFRAMRRLAARLTTPLVESE
FT                 MVRVLKKGLDDEIARYVYAIRVRNVEQLREECLEVEYHFRGREQKSTFRPV
FT                 PKFQSAGKRVEELEPETEFLDEDEARMVEETHLANKPRLCCWNCGQFDHGF
FT                 RDCVAKERKIFCYRCGKPEMFTPTCPNCSGNARAGMMKAGDQRSGQKPAKK
FT                 "
FT   CDS           2423..5704
FT                 /product="Gypsy-32_DP-I_1p"
FT                 /translation="MNDGPLSNIEFKNNSPNKLNKNSLKFVPAEERMRRYI
FT                 QIRNQIFDDRQLEGMRGVSRRLQKARSRFKERRQTRKEVAEAVRRGAGRDP
FT                 RVFAEVQIRGHRIAGLLDTGASVSVLGKGSRELLADLEVEMDNYVSIIKTA
FT                 SGEDRSIIGKTKLCVRYNGMNKEIVFYVCPYLEQAMYLGIDFWRSFALAPT
FT                 VLGEESSRSSEVQVGEIQMSQISQYAEHRPEDVEVEAWALEDTETEELEKV
FT                 KKEFLTYEDAGLGTTTVEQHRIQLIEGAEPFKDRHYPQSPAMQEVIWTEVD
FT                 KMLELGVIEVSDSPWSNRTTVVRKPNKNRFCLDARKLNQLTVKDAYPLPSI
FT                 EGILSRIDQTYYISSVDLKFAFWQIKLDPESRKCTAFTVAGRPLYQFVMMP
FT                 FGLCNAAQRLCRVMDKVIPTQLRSNVFVYLDDLLVIAPDFQTHLRYLRLVA
FT                 QCLKRANLTIGLKKSKFCFKSLKYLGFIIGGGTLQMDPDRVVAIQKIPNPS
FT                 SVKELRSFIGTAGWYRRFIKDFATIAVPLTDALKKHARGKFSLPTEARAAI
FT                 ESLKKALTTAPVLVHADFKRHFYIQCDASNFGVGAVLFQLDDDKAERPVAF
FT                 FSSKLNKHQINYSVTEKECLAAVLAIERFRPYVELMPFTVITDHASLKWLM
FT                 SLKDLNGRLARWSLRLQRFDFEIEHRKGVENIVEDTLSRCIEEVVLDPTEI
FT                 LGFQTTEFKSTEYQELKEEICRNKEVLPDLRIDGDLVFKRMAFAQIDDQVE
FT                 GSMWKLWIPAALTKTLIAKAHEDHTAGHGGMKKTLHRLKRHYYWPAMTAQV
FT                 REYVRSCTECKESKAPNYRSQVGIGQEVTTERPFQKLYIDFLGKYPRSKRG
FT                 QAWIFVVVDHFSKFTFLKAMREATAANVIQFLVQEVFYKFGVPEVIHSDNG
FT                 KQFLSKTFMDMVSGFGIRHMRTAVYSPQSNAAERVNRTILAAIRTYLEKDH
FT                 RDWDIYLPEIEVSIRDSVHEATGVTPFFAVFGQQMFLNGNCYKLARKLQSL
FT                 TEHEVHALDPADKRHLIREQIKRSLHQAYERSSQRYNKRARVFFARPGQEV
FT                 YRRNFTLSDFGKSYNAKFARKFLKCRVVRPVGNNAYE"
XX
SQ   Sequence 5705 BP; 1626 A; 1282 C; 1636 G; 1161 T; 0 other;
     ataatggcgc ccaatctgag acagggaagt ggactcgcag tcctggctcg accatcaaag        60
     agggagagta cggatgcgaa tcatacggaa gtcgaagaaa ttataaatat ccagcagaga       120
     agatagatct cgagtggtat tctgcaatcc ggggtccatc ggtgttccgg tggcctgtga       180
     gggactcgac gagttggctc acagaagcac ggcgcggggg gacctgagga tgcaagaaaa       240
     aaatccacaa agtaaatagt tttttttgat gtttgatgtt tcggcactta tctgacaacg       300
     gggagcaggc aatctcaaga ggggatttgg tttggcactg gcagaggaga atccaaaagc       360
     cagttagcaa ccggcccggt gcctggtgtg caaaaggaga acctgaagaa aaagaaatac       420
     ccgaagttag gaatggtcag aaagatttct gtttttcgct tcccctgctt accgctggat       480
     ggagtcggga gagtagattc tcaaggagat tttttgttct gagtggcccg tggggacaga       540
     tgtcggccac gcgttgcact cggagcagct acaacatccc gcaacgaaca ttcagtaggg       600
     aagtaggcgg aaacagcgac tgtagggaag tgagcgccct tgactcttaa tctttcaagg       660
     aagataagat cagtcaacag cgctcgccaa attctagacg ttggacagga aaagacgtag       720
     aacaccatgt gcagagttgg ccctagtagt agttgtggtt cctttacccc ttattagtgt       780
     ttttgccgta ttaaacgttt ttgtgctgaa gatcagtgag ttggcgttat aggtaatgtt       840
     tatgcgattg ttctgaaaga agagtagata attaattgta ttgaataaaa agataattag       900
     gatagttcga ggtagggaaa tacagggcta ggttgatgag cgcgtacaac ttgcggtcta       960
     agctgaaaat gactcgcagg actcctccac caggtaacct ccaaggacag atgcaaggcg      1020
     gggacacaca gggcgctgag gggcgtgaag acgacagctg gaatttgcca ggccaatcga      1080
     acgcactgcc ctccgagatt ctctcaggag taaatgtcgc catagcgcaa gcacaggaga      1140
     cgtggagagg cagcatggca gataccctga gtaggacgtt gcaggaggag atccgtcgcg      1200
     gctttatgga gctgatgggg gccataacag aggtgatggc gcctctgcgc cagaacgtgg      1260
     aattgatcca agatctgaga ttggaaagag accagggtga aaacaacgat aataataatg      1320
     gcgatcagca gcctctagct cacctcaggc agaagccgaa cacagggacc atgcccaaaa      1380
     gacccaagga cgatgacgca tggaattcac agtcgcctcc aaggaagccg gcgaggttga      1440
     gccagaactg gcgccgagga atagccgatg cggaccagga tccaggtgct ggaaggcaga      1500
     gacgggagac atcaggagac ggcggaggtc caacagatct gccaccatat gaaaggagag      1560
     atgattggag aggagcgaga tgggggcgcg tcgacaaatg ggaaatccac ttcgacggag      1620
     atggagatcc aaataagatg acggtgcagg acttcgtgtt cagggtcgag ttcctccgta      1680
     ggcagaaccg acggtcgtgg gacgaggtcc ttgacaactt tcaccatctc gtcaaaggac      1740
     aagcggcgga gtggtattgg caatttgtcc gagaacggcc tccggaagga tgggaggatt      1800
     tgaaggacga gttggtgtcc cggttccgag cagtgggtgg cgagttcgag cggctacgca      1860
     ccttgcatga gcgaagacaa caatctggcg aatctgtgga agagtatttt agagcgatgc      1920
     gcagactggc agctagactc accacacctt tggttgagtc cgaaatggtg cgagtcttga      1980
     agaaggggct cgatgatgag atcgcccgct acgtttacgc gatccgagtc cggaacgtgg      2040
     agcagctgag ggaagagtgc ctggaagtgg agtaccactt tcgcggacgc gagcagaagt      2100
     cgacgttccg tcctgtgccg aaattccaat cagccgggaa gcgagtggag gagctagagc      2160
     cggaaacgga gtttctggat gaagacgaag caaggatggt ggaagaaact cacctggcga      2220
     acaaacccag gctgtgttgc tggaattgcg gccagttcga ccacggattc cgagactgcg      2280
     tggcgaagga acgcaaaata ttctgttacc gctgcgggaa accagaaatg tttactccaa      2340
     cgtgtcccaa ttgctcggga aacgcacgag cgggcatgat gaaagcggga gatcagcgct      2400
     cgggacagaa gcccgcgaag aaatgaacga tggtccacta agtaatatag aatttaagaa      2460
     taatagcccg aataaattaa ataaaaatag tttgaagttt gtaccggccg aagaaaggat      2520
     gaggagatac atacaaattc gaaaccagat ctttgatgac aggcagctgg aggggatgcg      2580
     cggtgtcagt cgtagactcc aaaaggcccg ttccagattt aaggaaaggc gacagactcg      2640
     caaagaggtg gccgaggcag tcagacgagg agcaggacgc gatcccagag tgtttgccga      2700
     agtgcagata agaggacatc ggattgctgg actcctagat actggggcat ccgttagtgt      2760
     cttaggaaag ggcagccgtg aactccttgc cgaccttgag gtggaaatgg acaattatgt      2820
     ctcgatcatc aagacagcct ctggagaaga caggtccata atcggcaaaa ccaaactctg      2880
     cgtaagatat aacggaatga acaaagagat cgtgttttac gtatgcccgt acctagagca      2940
     agccatgtac ttgggcattg atttctggag atccttcgcg ctggctccca cagtcctcgg      3000
     agaagagtcc agtagatcca gcgaggtcca agtaggcgag atccaaatgt cacaaatcag      3060
     ccagtacgcc gaacatcgcc cggaggacgt ggaagtggaa gcttgggccc tggaagacac      3120
     ggaaaccgaa gagctggaga aggtaaagaa ggagtttctg acctatgagg atgccggatt      3180
     gggaacaacg acggtagagc agcatcggat ccagttgatc gagggcgcag aaccatttaa      3240
     agatcggcat taccctcaat ccccagcgat gcaggaggtg atctggaccg aggtggataa      3300
     aatgctggag ctaggagtga tcgaagttag cgatagtcca tggagcaatc ggacgacggt      3360
     ggtgcgaaag ccaaacaaaa atagattctg tttggacgcg cggaaactga accaactcac      3420
     cgtaaaagat gcttaccctc ttcctagtat cgagggtata ctatccagga ttgaccagac      3480
     atactacatt tctagcgtcg acctcaaatt cgcattctgg cagattaaac tggacccaga      3540
     aagccggaag tgcaccgcat ttaccgtcgc aggccgtccg ctgtatcaat tcgtgatgat      3600
     gcccttcggt ctgtgtaacg ctgcccagag gttatgcaga gtgatggata aggtaattcc      3660
     aactcagctc cgatcaaacg ttttcgttta tttggacgat cttttggtga tagccccgga      3720
     tttccagacg catctgcggt atctgcgatt ggtggcccag tgcctgaaaa gagcgaattt      3780
     gacgataggc ttaaaaaaat ccaaattctg ttttaagtcg ctaaaatacc tagggtttat      3840
     catcggaggt ggcacgctgc aaatggatcc cgatagggtt gtggctatac aaaagatccc      3900
     gaacccgagt tcagtgaagg agctacggag cttcatagga accgcaggat ggtataggcg      3960
     cttcatcaag gacttcgcaa ccatcgctgt accgttaaca gatgctctga agaagcatgc      4020
     gcgcgggaag ttttccttgc caacggaagc gagggcggcc atagaatccc tgaaaaaggc      4080
     cctcaccacg gctcctgtat tagtccatgc cgacttcaaa cgccattttt acatccagtg      4140
     cgacgcctca aattttggag tgggagcagt gcttttccag ctggatgacg acaaagcaga      4200
     gcgtccagtg gcattctttt cttccaagct gaacaaacac caaataaatt attctgtaac      4260
     ggagaaagaa tgtttagctg cggtattggc gatagagaga ttcaggccat atgtggaatt      4320
     gatgccgttc acggtaatta ctgatcacgc cagcctcaag tggctaatgt cactcaagga      4380
     cctgaatggg cgtctagcga gatggtcatt gcggctgcag aggttcgatt ttgagatcga      4440
     acaccgcaag ggagtcgaaa atatagtgga ggatacacta tcacgctgca tcgaggaggt      4500
     ggttctagac ccaacggaaa tcctcggatt ccagacgacg gaattcaagt caacggaata      4560
     ccaggagctg aaagaagaaa tctgcaggaa caaagaagta ttgcctgacc tgcgaataga      4620
     cggggaccta gtattcaagc gaatggcctt cgcgcaaatc gacgaccaag tggaaggttc      4680
     catgtggaaa ttatggattc ccgcggcatt gacgaaaacc ctcatcgcaa aggcccatga      4740
     agaccacaca gctggacacg gtggaatgaa gaagaccttg catagattaa aaaggcacta      4800
     ctactggccg gcgatgacgg cacaagtgcg ggaatacgtc cgaagctgca ccgaatgcaa      4860
     ggaatccaaa gcacccaatt accggagcca agtcgggatc ggtcaggaag taaccacgga      4920
     aaggccattc caaaagctct acatagactt ccttggaaag tatcccaggt cgaaaagggg      4980
     acaggcctgg attttcgtcg tcgtagacca cttttcgaaa ttcaccttct tgaaggcgat      5040
     gagagaggcg accgcggcga acgtcattca attcctggtg caagaggtct tttacaaatt      5100
     cggggtgcca gaggtgatcc actccgacaa cggaaagcag ttcctgtcga agactttcat      5160
     ggacatggtc agcggcttcg ggatccgaca catgcgcaca gcagtatact cgccgcaaag      5220
     caatgcagcc gagagagtaa atcggacgat actcgctgca ataaggacgt atttggagaa      5280
     ggatcacagg gactgggaca tctacctacc ggagatcgaa gtgtcaatcc gtgactccgt      5340
     gcacgaagcc acaggcgtca cgccgttctt cgctgtattt ggacagcaga tgttcctgaa      5400
     tgggaactgc tataagctgg cgaggaagct gcagtctttg acggaacacg aagtgcacgc      5460
     attagatccc gcggataagc gacacctcat tcgcgagcaa attaaacgca gcctacacca      5520
     agcgtatgag cggagcagcc agcgttataa caaacgggcc cgagtctttt tcgccagacc      5580
     tggccaagaa gtctacaggc gcaacttcac cctcagcgac tttggcaaaa gctacaacgc      5640
     caagttcgcc cggaaatttc taaaatgcag agtcgtacgt ccagtaggga ataacgccta      5700
     cgagc                                                                  5705
//
ID   Gypsy-32_DP-LTR repbase;    DNA;    INV; 1556 BP.
XX
AC   super_8;
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DP_;
KW   Gypsy-32_DP-I; Gypsy-32_DP-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1556
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1544-1544 (2012).
XX
DR   Genome; super_8; Positions 2222498 2224053.
XX
SQ   Sequence 1556 BP; 437 A; 294 C; 422 G; 403 T; 0 other;
     tgttacgaac ctttgttttt ctttggggca aggccggtgg ggatttttca cgccaaagac        60
     ctaaaattgt agcgaaaatt gcagactggg gacttcagag ttaaaaacac tcacttaagg       120
     attatcagat acgtgggtgt aagcctacgt tgggcgctgc aagatcctcc taggcactgt       180
     aatgtccgag aatgccagca tttttggtga aggtgtagct cttcgatgtt tgcgaataat       240
     tctccgcggc catggtcgct cgaattttcg ctaggtgttg catgcgaaga tatcgatagg       300
     cgagacccta gaagcgctga gaggaaggta tttttttgaa cagagtggca gggccaaaat       360
     ttaaggggaa aggttagcga agagtggcca cctggtcctg gagagttaga gttccgcgcg       420
     ctctccggag ccgttgtgag aggatttccg atctcatccc ataacggagt cccgaagcaa       480
     ctcacccaca cccaaaagaa aagagagccg ccagcagccc gaatcaggcc atgcccttga       540
     acctagttca agggcgatag aagagagagc gatggggatc ggcagccggg agcattaaac       600
     agaacatcca agaggggggt cagaaagaaa aattcccgca acggaggagc atgcgcgccg       660
     ggcacagtga cttagcgatt tttttgtgtt ctgaaagaaa aagtgagtgg gatgaggatg       720
     gagtagtggc catcaccctg caaaaaaatg aataaaagat aaataaatgt gattccaggg       780
     gatccagatc agggaaagac caggaaccag gaccaggaag cataagagga ataggtcaca       840
     gctccgccac cctggcttgt ttttcctgct ggtctcgaag gatcagacct ggccacgtag       900
     tgcgggaccc tcgcccactt agggagaaga aaaaaagcac atcaacttat ttactcccat       960
     taattatttt tgttagacgt ctctagttat aagtatatgt aatttaagtc cgtccatatt      1020
     tattatatat atgtaaccta tttatttata tttattatat tatttattcc tattaatcta      1080
     attatttatt aaccgccagt agtactaaga tgaggggggg atgaataggc aggcctagtt      1140
     tagaaatgat atcgtgtgaa aatagggaat gaagtgaaaa ttataacgaa gaaatgaatt      1200
     gttaagcgtt tcgtatgggg ggaagaggag ccacagcaac gagagggtaa ggcttttgcc      1260
     aatggcaggg agatccggaa cgtgtgattc agatctcagg tagggtgggt gcgtcggggg      1320
     taaaacatcg acacctcgac ctggtccaag tctgtgttga gggaagactg taatgttgtt      1380
     tgtcgagtag agtccgtttt ttttcagttt ttttttgtcg gttatttttg ttgtttcatt      1440
     ttgttcgaga tgtccaatca gttggttgtt gtgcgacctg agggcttggg aagtatccag      1500
     ccctgggatg actggctagc cggccttgcc ccaaagaaaa acaaaggttc gtaaca          1556
//
ID   Gypsy-32_DWil-I repbase;    DNA;    INV; 4540 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DWil_;
KW   Gypsy-32_DWil-LTR; Gypsy-32_DWil-I.
XX
NM   Gypsy-32_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4540
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           843..4523
FT                 /product="Gypsy-32_DWil-I_1p"
FT                 /translation="MLVENTATLQQLVQLFSLKVHADEIDKKNDTKLVVEN
FT                 FSKIIPEFCGEGMSVQQWFQNFELNADAYGLNNKQKYVQARAKMTGTAALF
FT                 LESTAVYEYEQLRQQVLEEFXCDQPCSAEIHNQLSXRTKSDGESFHEYILQ
FT                 MKRIAARGIIDMESVIKHIVNGLNLKSDYKYTLYGCKSLKELKDKYDIYEK
FT                 IASTKVKTEAAKRAPQQFTPKSNFNRNDRKQHCFKCGSMAHLRKDCKEEVK
FT                 CFRCNQTGHMSENCPASYSVNIVYEENRLKSLQIGEVKVKGLIDTGADVSL
FT                 LRKSVFSRMRGVQLLASTSCLRGLGQNTTRPVGQFKAXVANQNQISIYNVV
FT                 ETNTDPDVPSQXTHVVQSMIEDFGKRKKTADCPITLKIVPDDNIEPFRHAP
FT                 SRIAITEADVVKQQIDEWLKDDTIRRSSSNFASRTVIVKKKDGNNRVCIDY
FT                 RQLNKMVLKDCFPVPIVEDVLEKLGNAKVFTIMDLENGFLHVPVEXSSKXY
FT                 TAFITKEGQFEFNRAPFGFCNSPAAFIRFVNDVFQNLINDNVLDLYMDDII
FT                 IHAETVNEGLTKLRKVLDVAAEYGLKIKWRKCRFLQTEIEFLGHQIGNGNI
FT                 KPGAEKTKAIRKFPMPKNIKAVQAFLGLTGFFRKFIRDYSLIAKPLTDLLR
FT                 KDIEFKMGPKEQNAVEVLKDALIKEPVLKLYRRDARTEIHTDASKDGFGAA
FT                 LLQWQEGQLHPVLFWSKKXSESEARLHSYVQEAKAIFLACKKFXQYILGIN
FT                 FKLVTDCAAFKQTXSKKDVPREVAQWVLYLQDFDFEAVHRPGERLKHVDCL
FT                 SRYTSQVMVVSSVVTAKIRKAQQDDTMIKAISEILRSKPYDNFKLKGGLVY
FT                 KVIQGTDLLAIPKSLEREIITEAHXAGHFAVQKTMHAXQQSFWIPHLEGKV
FT                 MQIINNCVKCIIYNKKLGKKEGFLYQIDKGSEPLHTLQVDHLGPMDATSKL
FT                 YKYIFAMVDSFSKFVWMYPTKTTNADEVIKKLQEWSDIFGHPARIISDRGS
FT                 AFTSSSFEEYTKQNGIEHVWSTTGVPRGNGQIERVNRSILNIISKLSSEEP
FT                 ERWYKFVPRVQKAINSSVHKSTKRSPFELMLGVKMRSGTKSDILQLLEEEM
FT                 LDTFDSERQEMRDKAKENIQMAQKRYKEQFDKNRKNEVGYNVGDLVAIRRT
FT                 QFVAGKKLASEFLGPYEIVKLKRAGRYDVRKAATDTEGPKYTTTSNDNMKL
FT                 WSFVAENEDAWSSEADD"
XX
SQ   Sequence 4540 BP; 1574 A; 893 C; 1073 G; 986 T; 14 other;
     tttgggggct caaccgatcg cggactttgg aaatatatga ttggaaagct gacagtggaa        60
     agagtgagac agcgaaagtt ttcggcagca gaaaaaacga gatagcgaat gcgctcaacc       120
     gatcgcggac tttagaaata tatgattgga aagctgacag tggaaagagt gagacaccga       180
     aagttttaga cagcagaaaa aacgagagag cgaatacgct caaccgatcg cggactttgg       240
     aaatacatga ttggaaagct gacagtggaa agtgtgagac agcgaaagtt tcgacagcag       300
     aaaaaacgag acagcgagta cactcagacg aaaaaacgaa ttccaatttc gcaagaagac       360
     gcgatgccct ggcgccacac gaaataagca agacgaaaac atcaaacgaa acgaaaaaag       420
     agacagcaag cagacgcgaa attttggcgg caaacaaaac gaaaaaagag acagcaagca       480
     gacgcgaaat tttggtggca aacaaaacga agaaagagac agcaagcaga agcgaaattc       540
     tggcggcaaa cgaaacgaag aaaaagacaa caagcagacg ggaaattctg gcggcaaaga       600
     aacgaaggca gcaatcggaa amaacgagac gaatacagca agcaaaaaac gaagaggaga       660
     agtcgcgagc aakattccaa taagagaggg tatgcktcca ataagagtgt tacgaaatcg       720
     catcattatg tcggaccaag aggaccaatt agcccgatgt cgcacccagg tgaaatggtc       780
     aatgaattag aggcaattga gaacaaccat ggaaatgatg aaaaccagga ataaatgcag       840
     caatgctggt tgagaacacc gcgactcttc aacagctggt ccaactattt tctctgaaag       900
     tgcatgccga cgaaatagac aaaaagaatg acaccaagtt ggtggtggag aacttttcca       960
     aaatcatccc agaattctgc ggggaaggaa tgtctgtaca acagtggttt caaaacttcg      1020
     aactcaacgc cgatgcatat ggattaaaca ataaacagaa gtacgttcaa gcccgagcga      1080
     aaatgactgg taccgctgct ctatttctcg agtctacggc tgtctacgaa tatgaacaac      1140
     ttcgccagca agtcctggag gaatttgwtt gcgatcagcc gtgcagtgcc gaaattcaca      1200
     accaattatc tckacgtacg aagtccgatg gtgaaagttt tcatgagtac attttacaaa      1260
     tgaaacggat cgctgcccgt gggattattg atatggagtc agttatcaag cacatcgtta      1320
     atggattgaa cctaaagagt gactacaaat acacgttgta cggctgcaag tcactgaagg      1380
     agctgaaaga caaatatgac atttacgaaa aaatcgccag taccaaggtt aagaccgaag      1440
     cagcaaaacg agctccgcag cagtttacgc cgaaatcaaa cttcaatagg aatgacagga      1500
     agcaacattg cttcaaatgc ggatcaatgg cgcatctgcg caaggactgt aaggaggaag      1560
     tcaagtgttt ccgctgcaac caaactggac acatgtccga aaattgtcct gcttcctact      1620
     ctgtaaacat tgtgtatgaa gaaaaccgac tcaaatcatt gcagataggc gaggtgaagg      1680
     taaagggatt gatagacacc ggagctgacg tgtctctact tagaaagtct gtgttcagcc      1740
     gaatgcgagg agtccagctg ctagcaagta cgtcttgtct gagaggacta gggcagaaca      1800
     ccacacgtcc tgtaggtcaa ttcaaggcas aggttgccaa ccaaaatcag ataagtattt      1860
     acaatgtagt cgaaacaaac actgaccctg atgtgccttc acagtmtact catgttgttc      1920
     aatcgatgat tgaggatttt ggcaaaagaa agaagacagc tgactgcccg atcacgttga      1980
     agatcgtgcc tgacgacaac atcgagccat ttaggcacgc accaagccga atagccatta      2040
     ccgaagcaga tgtggtcaag cagcagatcg acgaatggct gaaagatgac acaatacgac      2100
     gttcatcatc taacttcgcc agtcgtacag ttatcgtaaa aaagaaggat ggcaataatc      2160
     gagtgtgcat tgactaccgg cagttaaaca agatggtatt gaaggattgt ttccctgtgc      2220
     ctatcgtcga agatgttttg gaaaaattgg gcaatgcaaa agttttcacc atcatggacc      2280
     ttgaaaatgg attccttcac gttccagttg aggwaagcag caagawatac accgcattca      2340
     ttacgaaaga gggccagttt gagtttaacc gcgcgccctt tggcttttgc aactccccag      2400
     ccgcttttat ccgttttgtt aatgacgtat ttcaaaacct cattaatgat aacgttctcg      2460
     atctttacat ggacgatatc ataatacatg ccgaaacagt caacgaaggt cttacgaaat      2520
     tgcgaaaagt tctggatgta gcagctgagt acgggctaaa aataaaatgg aggaaatgcc      2580
     gattcctgca gactgaaatt gaatttttgg gtcaccaaat tggaaacgga aacataaagc      2640
     cgggagcaga aaagaccaaa gccattagaa agtttccaat gccaaaaaac atcaaggctg      2700
     ttcaggcttt tctcggatta actggctttt tccgcaaatt tataagagac tactcattga      2760
     tcgccaagcc gctgacagat ctattgcgaa aggatatcga atttaaaatg ggcccgaagg      2820
     aacaaaacgc tgttgaagtc ttgaaagatg ccttaataaa agagcctgtt ttgaagttgt      2880
     atcgaaggga tgccagaact gaaatacata ccgacgcatc taaagacggg tttggtgctg      2940
     cattgctaca gtggcaagag ggtcaacttc accccgttct gttttggagc aagaaamcct      3000
     cagagtctga agcacggctg cacagctatg tacaagaagc caaagctata tttctagctt      3060
     gcaaaaaatt tsggcagtat attcttggaa ttaattttaa gcttgtaact gattgcgcgg      3120
     cgttcaaaca aacattkagt aagaaagacg ttcctcggga ggttgcccaa tgggttctat      3180
     acttgcaaga ttttgatttt gaggcagtac acagaccagg agagcggcta aaacacgtgg      3240
     actgcctaag ccgatacaca agtcaagtaa tggtagtatc gtcagtagtc acagcgaaga      3300
     ttagaaaagc tcagcaagat gatacgatga ttaaagcaat ttccgaaatt cttagaagca      3360
     agccatatga caactttaag cttaaaggag gtttggtgta caaggtgata caaggaacag      3420
     atttgctcgc tataccaaaa tccctagaaa gagaaataat tacagaagct cacaasgcag      3480
     gacactttgc agtgcagaaa actatgcacg cagkacaaca aagtttttgg ataccacatc      3540
     tggaaggcaa agtgatgcag ataataaaca attgtgtcaa atgcattatc tacaacaaga      3600
     aacttggcaa aaaagaaggg tttctttatc aaatcgacaa aggatccgaa ccgctgcaca      3660
     ccttacaagt ggatcacctc ggaccgatgg atgccacatc aaagctgtat aaatacatat      3720
     ttgcaatggt cgatagtttc agcaaatttg tatggatgta ccccacaaaa accactaatg      3780
     ccgacgaggt catcaaaaag ctacaggaat ggtcagatat attcggacat ccagctcgca      3840
     tcataagtga tcgtggatca gcatttacat cgtctagttt tgaagagtat acgaagcaga      3900
     atggaattga acatgtttgg agcaccactg gagtgccaag aggaaatgga caaattgaac      3960
     gtgtcaaccg atcgatcctt aacattatat ccaagttatc atcggaggag cctgagagat      4020
     ggtataagtt cgtaccgaga gttcaaaaag cgattaattc ttctgtccat aagtccacaa      4080
     agcggtctcc atttgagttg atgctcggcg tgaaaatgag gagcggaacc aaaagcgata      4140
     tcttacagtt gctcgaggaa gaaatgcttg acacctttga ctcagaaagg caagagatgc      4200
     gtgacaaagc aaaagaaaat atacagatgg ctcagaaacg ttataaagaa cagtttgata      4260
     aaaaccgaaa gaacgaggtc ggatacaatg ttggagatct ggtggccatt cgtagaaccc      4320
     aatttgtagc aggcaaaaag ttggcaagcg agtttttagg accgtacgag atagtgaagt      4380
     tgaaacgtgc aggacgctat gatgttcgaa aagcagcaac agacaccgag ggaccaaaat      4440
     atacgaccac tagcaatgac aacatgaaat tgtggagttt tgtagcagag aacgaggatg      4500
     catggtcatc agaggctgat gactaatcag gaaggccgaa                            4540
//
ID   Gypsy-32_DWil-LTR repbase;    DNA;    INV; 368 BP.
XX
AC   scaffold_181155;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DWil_;
KW   Gypsy-32_DWil-I; Gypsy-32_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181155; Positions 1213584 1213951.
XX
SQ   Sequence 368 BP; 113 A; 77 C; 88 G; 90 T; 0 other;
     tgtgagatgg gataaggtag ttacagcgtg gtgccaactc ccttatgaag attggcaacg        60
     cagcagcagt cgtgaggtat cgtgagcagt caatgttcag cagtcaacag tcaatgttca       120
     gcagtcagcg gtcgaggttc agcagtcaac agccaacgtt cagcagtcaa tagtcggtgt       180
     tcagcagtca gaggtatcag cagtcagaag tatcagcagt cagcagtaag gagccgataa       240
     atcagcagta cacagaaccc gagatttaag ttgcatattg taatcattat tcgcccgtcc       300
     accatttata atgctaataa actataatat aatacatttg gggactcaat tgaggactcc       360
     atcttaca                                                                368
//
ID   Gypsy-32_DYa-I repbase;    DNA;    INV; 5567 BP.
XX
AC   .
XX
DT   12-JAN-2012 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DYa_;
KW   Gypsy-32_DYa-LTR; Gypsy-32_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5567
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1850-1850 (2012).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           992..2413
FT                 /product="Gypsy-32_DYa-I_1p"
FT                 /translation="MSEENTPAGDNSVMTNVDCFICLKGIEYSAQLLAASC
FT                 GHSFHRVCFNVKVRNHKVCPVCKVDLRTVSESDYTSRPASALGRSQNDLSQ
FT                 ELTENCNTGDDNMEALQQVVKESNRRTEILAETISSCFQKMFTLLENQKQD
FT                 AATSSNRSEHDAQPHETENLSLRGTPAAVGNIPSAGLESESRFSPIDTNLR
FT                 PDRISQIVINWKLRFSGRSNMSIDDFIYRVEALTFQTLNGNFDLLSRHISN
FT                 LLEGSANDWFWRYHKSVRSIQWSHLRAAMRAQFKDELTDRNIRSAIDRRKQ
FT                 RENESFDEFYESIVVLADKLSMPLSELALLDILRANLQPQIQHELLYEKIS
FT                 SPAHLRQLVRTREVFMQNLTKNKPNFQRPQAPVRRSIHAVESQPDGEEQFS
FT                 EDDESLDVAAVNLVCWNCRKSGHRYQDCLSERQVFCYGCGQPNTYKPSCSK
FT                 CKGSKNVVGRAPVASARRSQSSVATQADR"
FT   CDS           join(2332..3543,3554..4108,4112..5488)
FT                 /product="Gypsy-32_DYa-I_2p"
FT                 /translation="GIKKRSGPCTSGKCTEESVISCDTGRPVKQSQSTETN
FT                 MPDKTTSLAVQQSLRPASVMGRRSCTRLREYYKRIKKEKQALISAIVGHDV
FT                 RPYAEITILGKQMIGLMDTGASISCIGGEFAREIFNRNITYKPMSSNVRTA
FT                 DGQLQGITGKLGLDVTYRGATKTLNFYIVPSLVQPLYLGIDFWTEFKILPS
FT                 GLSVQGLAISSLAGEDNKAADTITQRELTADQRNQLEKADQLFPSFLEKGL
FT                 GKTNLLHHEIDVGSAKPIKQRHYPVSPAIEKLMYEEIDRLIGLGVIEESNS
FT                 SWSSPVVIVRKPGKVRLCIDCRKVNMVTRKDAYPMPLIEGILSRLPKAEYI
FT                 TSLDLKDAYWQIPLEPESRDKTAFTVPGRPLYQSSQGYAFRLDQCSIHHGK
FT                 TNGSYNSSLPVFIYLDDLLIISDTFERHTNVLKEIAEALAKAGLTINVQKS
FT                 RFCVPEVQYLGHIVGHGIISMDAAKIEAIKEYPTPQSQKQLRRFLGMTGWY
FT                 SKFIENYASITSPLTDSLKKKKSFTWSSAAEQSFQDLKAALCKAPVLHMPD
FT                 FTRPFFIHCDASHTGVGGVLMQINQEGDEIPIAFMSRKLNECRNYSVTEKE
FT                 CLAAILSIKKFRPYVEGHTFTVITDHASLKWLMSQSDLSSRLARWALKLQG
FT                 YSFTIQHRKGVRNVVPDALSRTFTEDLSAIESEHAIDIRSPHFQSKQYQDL
FT                 RVKLMQAQKQLPDVKVVDDCIYRKTEHASRERLADDMIWKLWLPQELVPVA
FT                 LEXAHDSPLSSHCGIXKTLERIRRHYFWPNLVNEVKEYVNNCAVCKSIKHP
FT                 NYVLRPPLAKTGESQRLFQKLYIDYLGPYPRSKSGHVGILVVLDHFTKFPF
FT                 LKPVKNFTAEAILKYLEEDLFHCFGIPEVIVSDNGVQFKSNIFNNLLKKYG
FT                 VQHAYTAVYAPQANASERVNRSIISGIKAYVHPELDLLEDRAVQFSREDSV
FT                 NILRKDAVKAMKQQQSRNEKSYSLRSRVVSYTVGQEVHRRNFQQSKFVKGF
FT                 NAKLAPAFVKARIRRNLGSTYYELEDLQGKLVGKFHAKDIKQ"
XX
SQ   Sequence 5567 BP; 1783 A; 1086 C; 1192 G; 1504 T; 2 other;
     gaaataatta tggcgcccaa acgtgaggcc taaccttggc tgcctagtca gagttcagaa        60
     tagtcaaact gtgtggaatt ttcgtttacc actggagact aaaatatggt ttttcatttt       120
     cttttgtggt cactattata agcaaattgg cctaagtgaa tgagtttata gcggcatcag       180
     tttgcacgat tggattaact tactttaaat aaaggtattg ttccgggagt gtaagtttga       240
     tatgccatcc caaaaaaaaa aaaaaaaaga acagatatat agcgctggtt cctgtgattg       300
     gtcgtggata tcagggaaaa tgtctatatc ctgccacgca ggatagcaag cgctgtgctc       360
     tttgggtatt aatggattgg agcattcttc taagtaaggg ttctacctta ttacattatt       420
     ctcattaggt gcttataaat tatgtttgct tgaatgctaa cttttgtagc cagaatatat       480
     ttacttggat cgactattag ttagcagcgg cagtacattc tttgtgtata ttagttagct       540
     attgcaggta gcacatgaat atattataat atagtagcaa tagtgcgctg ccagtcaagg       600
     tatacagagg tttcagttgg ttgcgagtca caccctaagc attattatct tgaaaaaaaa       660
     aaaacgatgg atcagttgca tgtgcgaaat caaatataat ctcaatagct atactatctt       720
     gttacgttaa tttctgatac acaatgtcaa cagactaatg attactagac acaaagatta       780
     tcctgattcc cggagataat tatttttttt caaacaaaag aaaaaaatat acaaacaaca       840
     attaaagatt gcggtttaat aagcagattt atgagaaaaa tatgttaaaa aaaaataaat       900
     aaataaataa ataaataaat aaataaaaac aaataataat aatagtaaaa ttaaaaatat       960
     aaatttatat atgtaataaa aacttacgga aatgtctgaa gaaaacacac ccgcaggaga      1020
     caactcggtt atgacaaacg ttgactgctt tatttgcttg aaaggaattg aatactcggc      1080
     tcagctatta gcagcaagtt gtggtcatag ctttcatcga gtttgtttca atgtaaaggt      1140
     acgaaatcat aaagtttgtc cagtttgtaa agtagactta cgcaccgtaa gtgaaagcga      1200
     ctatactagt aggccagcca gtgccctggg taggtctcaa aacgatttaa gtcaggaatt      1260
     aacagagaat tgtaatacag gcgacgacaa tatggaagcg ttacagcaag tcgtaaagga      1320
     gtctaataga cgaacagaaa ttcttgcaga aaccattagt tcctgttttc aaaaaatgtt      1380
     taccttattg gagaatcaaa agcaagatgc agcaactagt agtaaccgat cagaacatga      1440
     cgcacaacct catgaaacag aaaatctttc cttgagggga actcccgctg cagttggaaa      1500
     tattccttca gcaggactcg agtcggaatc tagattctca ccaatagata caaacttgcg      1560
     accagatcgt atcagccaga tagttataaa ctggaaattg cggttttcag gtcgttcaaa      1620
     tatgtcgatt gatgacttta tatatagagt agaagcacta acatttcaaa cccttaatgg      1680
     taacttcgat cttttatctc gccatataag taacttgtta gaagggagcg ctaatgactg      1740
     gttttggcgg taccacaaaa gcgttcgttc aattcagtgg agccatttgc gagccgccat      1800
     gagggcacaa tttaaagacg agctgacaga ccgaaacatt cggtcagcca ttgaccgacg      1860
     caagcaaagg gagaacgaat cttttgacga attttatgag tcgatcgtgg tgttagccga      1920
     taagctttca atgcctttgt cagagctggc actgttggac atattgcgcg caaacttgca      1980
     gccgcagatt caacatgagc tcctttacga gaaaattagt agtccagcac accttcgcca      2040
     gttagttaga acacgtgagg tgtttatgca aaacttaacg aaaaataaac caaactttca      2100
     aaggcctcaa gctcctgtgc gacgttcaat tcacgccgta gagagccagc ccgatggcga      2160
     agagcagttt agcgaggatg acgagagtct tgacgtagct gcagttaatt tggtatgctg      2220
     gaactgccga aaaagtggcc atcgatacca agattgcctt agtgaacgtc aggtgttctg      2280
     ttacggctgt ggccagccta atacctataa accttcttgt tcaaaatgta agggatcaaa      2340
     aaacgtagtg ggccgtgcac cagtggcaag tgcacggagg agtcagtcat cagttgcgac      2400
     acaggcagac cggtaaagca atcccaatct acagaaacca acatgcctga caagaccact      2460
     tcactagcag tacaacaatc cctacgtcca gcttcagtaa tgggcagaag atcttgcaca      2520
     cgccttcgtg aatattacaa aagaattaaa aaagaaaagc aggctctgat ctctgccatc      2580
     gtaggtcacg acgtacgacc atatgcagaa attactatac taggaaagca gatgatagga      2640
     ttaatggata caggtgcatc cattagttgt ataggaggag aatttgctag agaaatattt      2700
     aaccgaaata taacttataa accaatgtca tcaaatgttc gcactgccga tggtcagctg      2760
     cagggtataa ctggaaaact cggtctggat gttacgtatc ggggagcaac aaagacccta      2820
     aacttttata ttgttccttc acttgttcag ccgttatatc taggcattga tttttggact      2880
     gaatttaaaa ttttgccttc cggcttgtca gtccaaggct tggcgatatc cagcctagca      2940
     ggtgaagata acaaggcagc tgatactatc acgcaacgcg agctgacggc ggatcagcgt      3000
     aatcaattag aaaaggccga tcaattattt ccttcatttt tagaaaaggg tctagggaaa      3060
     acaaacttgt tgcatcacga aatagatgta ggaagtgcaa aacctattaa gcagcgccat      3120
     tatccggttt cgccggcgat cgaaaaactc atgtatgagg aaatagatcg cctgatcggc      3180
     cttggagtca ttgaagaatc taatagttcc tggtcctcgc cagtggtgat cgttagaaag      3240
     ccaggcaagg tgcgcctttg tatcgactgc cgaaaagtaa atatggtgac acggaaggat      3300
     gcttatccca tgcctctcat agagggtata ttgagtcgtc tccctaaggc tgagtatatc      3360
     actagccttg acctcaaaga tgcgtattgg caaatacctc ttgagcctga atccagagac      3420
     aaaacagcct ttacagtgcc tggcaggccc ctgtatcagt cttcgcaagg ttatgccttt      3480
     cggcttgacc aatgctccat ccaccatggc aaaactaatg gatcgtataa ttccagccta      3540
     ccttagaaat taggtattca tttatcttga tgaccttctt ataatttccg acaccttcga      3600
     acggcataca aatgttctta aggaaattgc tgaggccttg gctaaagcgg gtctcactat      3660
     taatgtacaa aaaagtaggt tctgtgtgcc tgaagttcag tatttgggtc atattgtcgg      3720
     ccacgggatt atatccatgg atgctgctaa aattgaagcc atcaaagagt atcccacccc      3780
     ccagtctcaa aaacaacttc gccgattctt aggcatgact gggtggtaca gtaagtttat      3840
     agagaattat gcgtcaataa cctccccgct cacagactct ttaaaaaaga aaaaatcctt      3900
     tacgtggtcg agcgcggctg agcaatcctt tcaagacttg aaagcagcat tgtgtaaggc      3960
     tcccgttctg catatgcctg attttactcg cccgtttttt atacattgtg atgcgagtca      4020
     cacgggagtt ggcggcgttt tgatgcaaat caaccaggaa ggtgacgaaa ttcctatagc      4080
     ttttatgtca cgcaagctaa atgaatgcta gcgaaactat tctgtaacag aaaaagagtg      4140
     cttggccgct attctgagca ttaaaaaatt tagaccctac gtagaaggtc atacttttac      4200
     tgtgataacg gaccacgcct ccttaaaatg gttgatgtcg caatccgact tgagtagtcg      4260
     tttagccaga tgggcactca aactacaagg atatagcttt accattcagc atagaaaggg      4320
     cgtaagaaac gttgttccag acgcgctgtc acgcaccttt acggaagatt tgtctgcaat      4380
     agaaagcgaa cacgcaattg atattcgctc tccacatttc caatcaaaac aatatcaaga      4440
     tctgagggta aaactcatgc aagctcaaaa gcagttgcct gacgtgaaag tcgtggatga      4500
     ttgcatttat aggaagacag agcatgcatc ccgggaaagg ctagcagacg acatgatatg      4560
     gaaattatgg ctgccacaag aactggtacc tgttgccctg gaaawggcgc acgatagccc      4620
     tttatcctcg cactgtggga ttaamaaaac attagagagg atacgaaggc attatttttg      4680
     gccaaattta gttaacgaag ttaaagagta tgtaaataat tgtgcagtat gtaaaagtat      4740
     taagcatccc aattatgttt tgagaccccc tctggctaaa acaggtgaat cgcaacggct      4800
     attccaaaag ctttatatcg attacttggg gccttatcct cgttcaaaat caggtcacgt      4860
     ggggatattg gtagtactcg atcactttac aaaattccca ttcttaaagc cagtgaaaaa      4920
     tttcactgct gaagctattc tgaagtatct tgaagaagac ctgtttcact gttttggaat      4980
     tccggaggtt atagtatccg acaacggagt tcagttcaaa tctaacatat tcaacaattt      5040
     attaaagaaa tacggcgttc agcatgcgta tacagccgtg tatgcccctc aagctaacgc      5100
     gtcagaacgg gtaaaccgta gtattatctc tggaatcaaa gcgtatgttc atccggaatt      5160
     ggacttgtta gaggatcgag cagttcaatt cagtcgagag gattctgtga atattcttag      5220
     aaaagatgca gtcaaagcaa tgaagcaaca acaaagtcgg aatgagaagt cgtatagctt      5280
     aagaagccga gtcgtgtcat ataccgttgg ccaggaagtt catcgtagaa acttccagca      5340
     aagcaagttt gtaaaaggtt ttaatgccaa actagcacca gcatttgtga aagctagaat      5400
     tagaagaaat ctaggttcaa cttattacga gctagaagac cttcaaggaa aattagttgg      5460
     aaaattccac gcgaaagata tcaaacaatg atataaatta gctctccaag ctggtatcac      5520
     gcattgtgag agcatgtctc ccaagtgcga tttcagcggt ggggatt                    5567
//
ID   Gypsy-32_DYa-LTR repbase;    DNA;    INV; 2376 BP.
XX
AC   .
XX
DT   12-JAN-2012 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_DYa_;
KW   Gypsy-32_DYa-LTR; Gypsy-32_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2376
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1851-1851 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2376 BP; 822 A; 397 C; 435 G; 714 T; 8 other;
     tgtaggaagg gcttgtcgag cttatataca aaaaactata aaatacacta gatatggaaa        60
     caaattcatt tgtatggata gtccatcaag atagggtggc gccatctatg gcgggaaact       120
     gagacctgcc gtactggcaa cgtcgaaaat agggtagttc tctggctgcc agtgtactgt       180
     cattatwgtc aactttgacg gatctatatt tccgatctgg ggtaaccttc tgagcccacg       240
     catccagatc gttctttwcc actttggcca tcatcgagag cagttgtctt ctgggagtaa       300
     ttggtttttt tttggtcgtg attgaattgc attagcaatg tggtttaaaa taacgacaag       360
     ctgagtgcaa gctgtgagca tgctaaaaca aaaaaaaagc aaacaaataa agcttaatgt       420
     gctattttat ctagatatac aatwaaactt caaacaaaca aaaaaataga acgacaaaga       480
     aaaaaaaaac cacgcgacaa gtagtaaaag ccagtgggaa agaaagagca gttgtattgt       540
     actggatgcc aggcctgaac gcagggtaaa tatttaataa ccccggttaa mgaattagga       600
     agtgattttt tgttttattt tttttctttg gcgatttttt ttcgaaaaaa aatcatagcg       660
     tggcaccttg tgagcagtcc cataggcaaa agttaagcgg aaaagtaagc cagcatcsca       720
     gcgccgtagc mgtagtcgtt gaacaataga ccagcaagaa aaaatgtaaa gaaaaaaata       780
     agcaatgatg acgtcataaa atggatcttc gaaaacccta gcttgtccca aaagcaatac       840
     ctgtgccgcc tgcaaaaata aaccaaaaga gattaaataa aggagaagaa acgaaaacgt       900
     agctgctagc cagtgcaggc gatatgacgt cgagctaccc tgttaataag ctcatacttt       960
     gcgactagtg ccattctcct cagcgatatt taccgatatc acctggtagt tcgaccaatg      1020
     ggttaattaa gaaaccaatt cgcttaaagt ttaaaaatta ttctctcttg ttactgtata      1080
     gggatcatga aattgaaaaa aaaggcaatc aaataagaga aaaatgttgt tgaagtgaac      1140
     gggtgaaaac taatatatgt acaaagtgaa aagaaaagta tgtgaaaaga ggaaagaaat      1200
     cgaacaaaaa gtaaaacgta taattccgca agcaaaaatc aaacgaacat aataaaaaca      1260
     attcctaaat aattatgtga taatacaaaa aaaaaaaaat atgaaaagga aaaaaaccga      1320
     cgacgatcta actttgtaac cataagcaag aacttttttt ttcccagccg atcgccgcag      1380
     ccaaagatct ttcgccgccg gaattggatt tactgtaagt gctttatcat atatattgtt      1440
     gcattctacc ctttatttag ttatttcgtc atcgscaata cgcaatgcgc tttagaagct      1500
     gaagtaattg tttcgcatta aaataaggtt tgttttgatt acgcctttcg tctttagcat      1560
     tggaattatg catttttttt gtactagcat acatgaaaac gaagaatttg gattaacgta      1620
     atacagcaat ataccttccc atgtttcatt cttattatta aatatgtcat tattattatt      1680
     actattttta tataagatta acccagttct tttccagcaa catttatctc atttgccaat      1740
     aagttactat acttatatat atatagctaa tttctttata tacatttatc tatacataac      1800
     taatggtaaa actaaagata taacgagaaa tgaaatagga atttaggtga attatgtcaa      1860
     aaatatatac ttatagaact gagatgaata tgaaatggat agtttataaa ttactatgtt      1920
     aataaaaggt tatcaaaatg aattttagat aaatttctcc ttatccgggg gtcatggata      1980
     tcaaagtgtc atggaatgag tagaatgtag tcacttcaag ggatcctaag tgtaatttgt      2040
     aggaccataa ggatcatgga agggtgggca ttacgcagac tggcgtgata gaagaagtga      2100
     tgttggcaag tgtatccctt attttctccc tctttagttt tttttttctt tctattttta      2160
     twctagcctt ttctgttcgt cccctttttg tccataaata tagtacgcga attttaatta      2220
     tttttcaata gcatacgagc attttaacgt ggcggttctt tcttttgctg atccacccca      2280
     agccgactag atatccgaaa tgccgaggac atcgcgtgct ccgttaacac gttaatattc      2340
     caccagctca gtcttaatag atcgttatat gctaca                                2376
//
ID   Gypsy-32_HeAr-I repbase;    DNA;    INV; 4622 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4622
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5579-5579 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..4621
FT                 /product="Gypsy-32_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MICHQITHGAQESDVTTEAFIAKKRALFASLPPPALT
FT                 ETQQIDLVFALIRLEIRNRMPRDTVPTFEKLLETARGIEETLQEYAHGAQH
FT                 TETSAAQTRKGKQRCTFCKNPGHTVDVCRKKKRVESSVSVVAKDVAEIQTQ
FT                 APSPSQPKFSCYGCGAPGVYRSNCTTCKKSSPIKKEDLKFCAIDIQLDADS
FT                 RPVVFVEIEGIKGTAYIDTCAKMSVASYSLYLALVKGGHKFEEQPVNLTLA
FT                 DGVKKTQRVLKCRADVELLGRKVQTTFIVLPEAKENRTLLGVGFLKDAGMV
FT                 INMPQFTWNFIDEPEQQYELYAEEFAIFETTVITEMMEMPSPISSLTMTES
FT                 ENSPSITTIPPTPPATPPPMEISEPPTTPKTQPVDCINYKLAPIDFTSPST
FT                 SSKKRRLFDGYSPSFTDFMLRDAQINIHREDIELSPQSASLFDANNWEIRI
FT                 DAIDIETHITSAQKEQLDRLLQENRHVFNAKREPTKLIEHCIRTIDDKPIS
FT                 VPPYRLSPPRKEALQREINTMLADGIIELSSSPWAAPVVLVPKPNGNIRLC
FT                 VDYRRLNAITIPDSYPIPRIDDLLHEAKPTPYMSLLDLKAGYWQIGVRKQD
FT                 QEKTAFITPFGIFNFTRMPFGLRNAPATFQRLIDRMRVGLPDVKLLAYLDD
FT                 LVILSPSFQTHLEDLKKVLDRLNEFGLTVNEDKCRFCCSVIKYLGHYITPK
FT                 GLQVDPEKTAAITKLPTPKTLKHLVSFLQMCSWYRRFINNFAKVAEPLTRL
FT                 TKKNAKWEWTEDQQNAYHQLKSYLTSAPILRQADETKPYLIKSDASSYAIG
FT                 AVLVQGEGEDEHPVEFASRLLTSAERNYSTTEREALAVVWAVTKFRGYIEG
FT                 LPVTIITDHQALKWLMSLKTPTGRLARWALILQAFDITIKYAPGKTNTVAD
FT                 CLSRPPCAEETLQACDVCKVTIDMPLRSTAEIREEQLKDERLKPIVKDLEG
FT                 IDNDEKAVYWSNKGYLLNNGVLYRHSPYSESDDAQLVVPDHEWANVLATYH
FT                 DNPLAGHYGSDKTYRRISQRYYWTGMRKYIDSYTKNCLECQRYKASNQKPA
FT                 GLLQTTVMSQRFEVISFDLFGPLPASPDGKTWILIVEDVATRWVELFALQQ
FT                 ATAETCAMTLINEVFLRYGLPRRMISDNGPQFVSSIMQQVVYTLNIKHAFT
FT                 PVYHPETNPVERKNRDLKPQLAILVKDNHRNWPEHLPSIRFAMNTATSLST
FT                 GFTPAYLTFGRELRTPDDTTHDFREILQSENFIPEITPKLLQLATNLQKAQ
FT                 EVHEQTEERRKKYVDQRRRETPGYNSGDFVLVTQHSLSNATKGVSSKFAPR
FT                 RDGPYMIKKQHGPSSYELANPNNPDVVVGVYHSSALVPYVGSGSELPDPAQ
FT                 PIRKRGRPRKHQPEPVNDKVRVRKRGRPETNSSCPGSSSGRLQIQRGR"
XX
SQ   Sequence 4622 BP; 1437 A; 1078 C; 1023 G; 1083 T; 1 other;
     atctggcgca caacgtgaag ccgaatccag ggatcaagct agaaaatcta cgaagactcc        60
     cacatcggac ttcgaagatg gcgatgtcca acgaacagtt tcagatgttc ctacagacca       120
     tcacggcttc taaacaaaga acttttgcat cctgcaacat cacctacagt gggaaaaagg       180
     acacggatgc agttgaggca ttttagcagc agctaccacc tacaaaaatg tggaaaaatt       240
     aagtgactca gatgcgcttc agggacttcc acttcttcta cgtgaagaag cagcggtttg       300
     gtggcaaggc gcacaaaccg gtgtagaaaa gtgggaagaa ttttgcaaca aattgcgcca       360
     tactttcgct ccccgcaaac cagcgtatat gatatgtcac cagatcacac acggggccca       420
     ggagtcagat gtcacaacgg aagcatttat tgccaagaag cgggcattgt tcgcatcact       480
     acctcctccc gcacttactg aaacacaaca aatagatttg gtgttcgctc taatacgttt       540
     ggaaatacga aatcgcatgc ctcgagatac agttccaact ttcgagaaac ttctggaaac       600
     agcacgtggt atcgaagaaa ctctgcaaga atacgcacac ggagctcaac ataccgaaac       660
     atctgcagct cagacgcgaa aaggaaagca gcgatgcacg ttttgtaaaa atccgggaca       720
     cacggtggac gtatgccgga agaagaagcg tgtggaaagt tcagtttcgg tagtggcaaa       780
     agatgttgct gaaattcaga cgcaggcacc atctccatca caacccaaat tttcttgtta       840
     cggttgcggc gcacccggtg tatacagaag caactgtact acctgtaaga agtcgtcgcc       900
     cattaagaaa gaagatttga agttttgtgc catcgacata cagttagatg cagattcccg       960
     gcctgttgtg ttcgtggaga tcgagggaat aaaaggtact gcctatattg atacttgcgc      1020
     gaagatgagt gtcgcatcgt actccttata tttggcgttg gtcaaaggtg gacacaaatt      1080
     cgaggaacaa ccagtcaact taacgttagc tgacggagta aagaaaactc aaagagtgct      1140
     aaagtgcaga gccgacgttg agttactagg tcgaaaggtg cagacgacat tcatcgtgct      1200
     acctgaagca aaggagaacc gcactctttt gggtgttggc tttctaaaag atgctggtat      1260
     ggtaattaac atgccgcagt tcacatggaa ctttatcgac gaaccagaac agcaatacga      1320
     gttatatgct gaagaatttg ccatatttga gactactgtc atcactgaga tgatggaaat      1380
     gccaagccca ataagttcgc ttactatgac tgagagcgaa aatagtccaa gcattacgac      1440
     aatcccacct actccaccag caacacctcc gccgatggaa atatctgaac ctccgacaac      1500
     acccaaaact caaccagttg attgcatcaa ttataagctg gcaccaatag actttaccag      1560
     cccgtctact tcaagcaaga aacgacgcct gttcgatggt tattctccca gctttacaga      1620
     tttcatgctg cgagacgcac aaatcaacat tcaccgggaa gacattgaat tatccccgca      1680
     aagtgctagt ctctttgacg caaataattg ggaaatacgc attgacgcaa ttgatatcga      1740
     aacacatatc acaagtgctc agaaggagca gctggatagg cttttacaag aaaataggca      1800
     cgttttcaat gccaaacgag aaccaacaaa actcattgaa cattgcatca gaaccataga      1860
     cgataagcca atctcggtcc caccataccg actctcaccg cctcgcaaag aagccctgca      1920
     gcgtgagatc aacactatgc tggcagatgg tattattgaa ctctcttcgt ctccatgggc      1980
     tgcacctgta gttcttgtac cgaaacccaa cgggaatatc cggctttgcg tggactatcg      2040
     tcgactgaat gcgattacga tacccgattc atacccaatt cctcgaattg atgacctctt      2100
     gcatgaagct aagccaaccc catacatgtc attactggat ttgaaagcag gctactggca      2160
     aattggagta cgcaaacaag accaagagaa gactgcattc attacaccat ttggcatatt      2220
     taacttcact cgtatgccgt tcggtttacg caatgctccg gcaacatttc agagattgat      2280
     agatcggatg cgagtgggtt tgcctgatgt gaagctcctc gcgtatttag atgacctggt      2340
     gatactatca ccgtcttttc aaacacatct cgaagatctc aaaaaagttt tagatagact      2400
     caatgaattt ggcctaacag ttaatgagga taaatgtcgt ttttgctgtt cagttataaa      2460
     atacctgggt cattatatta cgccaaaagg actgcaagtg gatcctgaga aaacagccgc      2520
     gatcacgaag cttcccacac caaaaacctt aaaacatttg gtaagttttt tacaaatgtg      2580
     ctcctggtat cggcgattta tcaacaactt tgcaaaggtt gctgaacctc tcactcggtt      2640
     aacgaaaaag aacgctaagt gggagtggac agaagaccag cagaatgctt accatcaact      2700
     gaagagctac ttgacttctg ccccaatact cagacaggct gatgaaacca aaccctatct      2760
     tataaaaagt gacgcaagtt cttatgctat cggagcagtc ttggtccagg gggagggaga      2820
     agatgaacat cccgtcgaat tcgctagtcg ccttctgaca tcagccgaac gtaattactc      2880
     taccacagaa cgagaggcgc ttgctgtggt ttgggcagta acaaagttcc gtgggtacat      2940
     cgaaggtctt cctgttacca ttataacaga tcatcaggcc ttgaagtggc ttatgtctct      3000
     gaaaacgccg acaggaagac ttgcaagatg ggcactaata ttgcaagcat ttgacataac      3060
     aatcaaatac gctccgggta aaacaaacac tgtcgctgac tgtctttcta gaccaccatg      3120
     tgctgaagaa acgcttcaag cgtgtgacgt ttgtaaagtg accatagaca tgcccttgcg      3180
     tagtacagca gaaataagag aagaacagtt aaaggacgaa agattaaaac ccattgtgaa      3240
     ggatttggaa ggaatagaca atgatgagaa ggcagtatac tggagcaaca aagggtatct      3300
     actaaataat ggggtactct atcgacacag tccctattca gagtctgacg atgcacaatt      3360
     agtggtacca gatcatgaat gggcaaacgt actggcgaca tatcacgata acccgttagc      3420
     aggccattat ggttcggata agacttatcg gcgtatcagt cagcgatatt attggactgg      3480
     aatgagaaag tatattgata gctacaccaa aaattgttta gaatgtcaac ggtacaaagc      3540
     atcaaaccag aaaccagcgg gactacttca aaccaccgta atgagccaaa gatttgaagt      3600
     catatctttt gacctntttg gaccattgcc agcatcccct gatgggaaaa catggatcct      3660
     cattgtagaa gatgtggcaa ctcgctgggt ggaactgttt gctctacaac aggccactgc      3720
     agagacctgt gctatgacac ttattaacga ggtgtttctt cgctatggac ttccccgacg      3780
     aatgataagt gataacggac ctcagttcgt cagctccatc atgcaacaag tcgtttatac      3840
     gctaaatatc aaacatgcgt tcacaccagt ataccatcca gaaaccaatc ccgtcgaaag      3900
     aaagaacagg gatcttaagc cccagctagc tatcctagtc aaagacaacc acagaaactg      3960
     gccagaacac ctgcctagta ttcggttcgc aatgaacaca gcaaccagcc tctcgacagg      4020
     atttacacca gcctacttga ctttcgggag ggaacttagg acgccagatg atacgactca      4080
     tgactttcgg gagatcctac aatcagagaa ttttatacct gaaatcacac caaagttatt      4140
     acaattagct actaacctac agaaggctca ggaagtccat gaacaaactg aagagagacg      4200
     taagaaatat gtagaccaac gccggcgaga gactccgggt tacaattctg gtgactttgt      4260
     actcgtcaca cagcattccc tgagcaatgc cactaaaggt gtgagtagta aattcgcgcc      4320
     gcgacgtgat ggtccttaca tgattaagaa acaacatggt ccgtcatcct atgaactcgc      4380
     caatcccaac aatcctgatg ttgtggttgg agtttaccat tcttctgctt tggtacctta      4440
     tgttggaagt ggttctgagc ttccggaccc cgcccagcct attagaaaaa gaggacggcc      4500
     aagaaaacac caacccgagc ctgtgaacga caaggtacgg gtaaggaaga gaggcagacc      4560
     tgagaccaac tcttcttgtc ctggatcatc gtcgggacga cttcagatcc agagggggag      4620
     ac                                                                     4622
//
ID   Gypsy-32_HeAr-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-290
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5609-5609 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 290 BP; 72 A; 77 C; 64 G; 77 T; 0 other;
     tgtagcaact caacatccta cagcgcgcac gcgtcgcccc tacttcacag cattagacgt        60
     cattgagggc ggagcctagc gccccgccac agaccggccg ctatataaga cgagcgcgcg       120
     cgcatctgag cagagtgtgt tcgctgcgct ctcggactgc ttcagtctca ctggctggac       180
     agcttcgagt actagtgtac acagttttct aatctaccca cagtgtgtaa tttgtgttag       240
     aaaaccttca taataaatta gttataaatt tatatagtgt ttctattaca                  290
//
ID   Gypsy-32_LMi-I repbase;    DNA;    INV; 6739 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6739
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(5309..5887,5868..6452)
FT                 /product="Gypsy-32_LMi-I_2p"
FT                 /translation="MLRSLQESITYARIETAELEEALLHATRGHLSPALLS
FT                 PEQFEDGLERIRAKLPSPLALLSTDRDKALSIYYRMASVTSRQVGTRLEVN
FT                 IKIPLTCEGCRFQSYEIHTYPIYWEAMRKMVQLKMRDILLVSTDRRTHILL
FT                 SVQELNQCSIGPVTICPTKLMHTVSKSCEFSLFCSNNLTKECPREVIAGNQ
FT                 DFFQGIRIFFKKVGQHWLFSVANPTIIIYTCYEQGRQMETQRLELHGQGLI
FT                 INGTACDISGPTFRLPATIVGTVTIGIKHTLIYVPDQPLEILPQEHLTMLN
FT                 DSLDSTLLTSLDQMIAAQHGRIAMGRLLEHVQNYRQQQRRQTIIIGSSTTA
FT                 ASVFCITVGLLYYVFKKKVAQIPFLPSLTLRIPSSKLGTEQTSKV"
FT   CDS           join(203..1114,1054..2187,2163..3500,3350..4546)
FT                 /product="Gypsy-32_LMi-I_1p"
FT                 /translation="MPDDKVTLQAAVDHLVNQVSQLQAQLDDLKVAGQVES
FT                 SPRVATVDTTAAALVTPFSGKSGEDVFVFFDNLATAARLGNWSKDQMLSIA
FT                 KLKLTGEAKSVAMCHENLREARTFEGFREILIERFRQKNTKRYCREKLNTI
FT                 FQKQGESIEAFADRIRKVNMGTYELTDDDRINSVVLREAEERALDAFLRGM
FT                 QPDLSKKVRMDFPKTLSEALTLALALEEVESMTRSRERRTVFSTDVTCFRC
FT                 GRKGHMKRECKEVQCRQCKKFGHLQRDCRNNGQQKRKDYSQAKSRPQSLNR
FT                 TGSGVSTVQRSQIASSVVKQDGERGVHCATLPVNVSTCAKSVADLFLTGFV
FT                 GKKLCKFLLDTGSQVSVASRGMLGKKSLKSPRWTLSGVGGGPVSSLGSSTL
FT                 DFRVGGTIFQVEVEVLPVVGSNYDVILGLDFLVAHHAKVDLERRTVELDGT
FT                 LFHLGATAEIPLQSQGSPIAQGKPLKLQTRSLKVSSRDNIPQRSGRLIWCQ
FT                 VGADLPENTLCVVEPLSENDRLDPARCFVRRSIAYVREIEGTRVVPVSIDN
FT                 FGPEEVQLVKGTPVANLEVLNEDDFEDNFTQREATPGKSVDWLALKNKVAH
FT                 LEGQDKVAMEALLKEYIELFNPSGPLPATPLVQHYIPTGNEAPVYKKPYRV
FT                 PHCLQPVMQQLIDQQLRDDIIEESNSPWSAPWYQSLVRAVVLIAKKSPNGE
FT                 KAYRFCCDYRFLNKKTVTDAYPMPNITETLDNLGQCQYFTTLDLRSGYHQL
FT                 EVAPEDRPKTAFSTPDGHYQYKRMPFGLKNAPATFQRLLDSVLRGLKPRQC
FT                 MVYLDDIIIFSKNLQEHVSHLRDVFDRLLAAKLTLSPDKCHFALKEVRYLG
FT                 HIIGQEGIRTDPKLVQAVKDFPTPTTVKQLQSYLGVANFYRKYIPKFAEIA
FT                 RPLTQLLKKGAKFIWSPECDSAFGKLKELLTSAPVLIFPDFNKQFILSCDA
FT                 SNYALGVVLSQEMNGWEHPVAYASRQLNNAERNYSTTEREMLALVFGITYF
FT                 RCYLYGRKFKVVTDHSALRWLLNLKDPSSRLARWCLRLSEYDFEVIHRPGI
FT                 SHANADGLSRKIRSMECAGIDREDWKNAQHADPDCQQFASQPQFCLEDGIL
FT                 LGQHVTDRELLCQLRCVTKFQRRLEECTTRGPGLSAVCQPAAILLGGRNSF
FT                 RSTRNGPRIVVPATLRNEILKQAHDSILAGHSGKRATERRIAQNYWWKTRK
FT                 QDVDQYVKNCIPCAQRAQLSRQRIELQRLPEADKPRAMIGIDISGPLIQTP
FT                 AGNRYILTIIDHFSRFVAMVAIPDQQATTVAQALLNEWILKFGVPDTIISD
FT                 QGATFMAELFKQLCRLLHIKKLRTSAYHPQSNGRTERVHRTIAKMLSYYVN
FT                 SQHNNWDTLLNACTCAYNTKVHESTGLSPYEVVFGEKMRSPFDFCMKQQKG
FT                 DISQVKDFAKRMKMVWRQVKKMNTKALERQERLYNSKATLPKFHVGQWVML
FT                 SNPCVPKGKTKKFVSRYDGPYQVIEMTSPVNVKLQLPTRTVVVHLSRVRPF
FT                 KGNIELVPPCR"
XX
SQ   Sequence 6739 BP; 2006 A; 1294 C; 1678 G; 1760 T; 1 other;
     ctggtgtcag aagaattttg gcggaaaaga tggactccag gtgccggaag gtgcaagttt        60
     cgggaatcat ggagaggtcg accagcagcg gtctacggca gcaaaatgag tgagtaccaa       120
     gcttgaattc ttcttcactg ctttccctgg gtttttcttc cttttatttt tattttgggt       180
     gactttttct tacgcttcaa gcatgccaga cgataaagta acattacaag cagctgttga       240
     ccatttagtg aatcaggtga gccagctgca ggctcaactt gatgatctaa aggtcgcggg       300
     tcaggtagag tcatccccaa gggtagcaac agtagatact actgccgcgg cgttggttac       360
     gccattttcg ggaaagtcag gggaagatgt ttttgtattt tttgataatt tggccacggc       420
     cgccaggttg ggaaattggt caaaggatca gatgctaagc attgcgaaat taaaattgac       480
     aggggaagct aagtcagttg caatgtgcca tgagaatttg cgagaggcta ggacttttga       540
     aggattccgg gaaattttaa ttgagaggtt ccgtcagaag aatacgaaga ggtattgtcg       600
     ggaaaagctt aacaccattt ttcaaaaaca gggtgaatca attgaagctt ttgcggatag       660
     gattaggaag gtgaatatgg gtacttatga actaacagat gatgatcgga taaattcagt       720
     tgttttacgt gaggcagagg aaagagctct tgatgcgttt ttgaggggta tgcaaccaga       780
     tttgtcgaaa aaagttagga tggacttccc aaagacattg agcgaggctc tgacgttagc       840
     tttggcatta gaagaagtag agtcaatgac gaggtcacgg gaacgaagaa cggtattctc       900
     taccgatgtg acatgtttta ggtgtggccg taaggggcat atgaaacggg aatgcaaaga       960
     agtgcagtgt aggcagtgca aaaaattcgg tcacttgcag cgtgactgtc ggaacaatgg      1020
     gcagcagaaa cggaaggatt attctcaagc taaatcgcgt cctcagtcgt taaacaggac      1080
     ggggagcggg gtgtccactg tgcaacgctc ccagtaaacg ttagcacttg tgcaaaatca      1140
     gtggcagatc tttttctgac cggctttgtg gggaaaaaac tttgtaaatt tttgttggac      1200
     actggttctc aggtgtcggt agcgagcagg ggcatgctcg gaaagaaatc attaaaatca      1260
     ccacgctgga ctctgagcgg cgttggtggg gggcccgtaa gttcacttgg atcaagtact      1320
     cttgatttcc gagtgggtgg aacgattttt caggtagaag ttgaagttct tccggtggta      1380
     ggcagcaact acgatgtcat tcttgggtta gacttcctgg ttgctcatca cgctaaagtt      1440
     gacttggaac ggcgtacggt ggaactggat ggaacgttgt ttcatctagg cgccaccgcc      1500
     gagataccat tacagtcgca aggttcgccc atcgcgcaag ggaaaccact taaactgcag      1560
     actaggtccc tcaaagttag ctcgcgtgat aacataccgc aaaggtcagg gaggctaatc      1620
     tggtgtcaag taggcgctga tttgccagaa aatacgttat gtgttgtgga accgttatcg      1680
     gaaaatgaca ggctggaccc agccaggtgt tttgtacgac gtagcatagc ttacgtgcgg      1740
     gaaattgaag gtacgagggt agtaccggtt agcattgata attttgggcc cgaggaggta      1800
     cagttagtga agggtacccc ggtagcgaat ttggaagtat taaatgaaga tgactttgaa      1860
     gataatttta cacaaaggga agcaacgccg ggaaaatctg tcgactggtt agcactaaag      1920
     aataaggttg cacatttgga gggacaggat aaggttgcca tggaagcttt gttaaaagag      1980
     tatattgaat tatttaatcc ttcaggcccg ttacctgcaa cacccctagt acagcattac      2040
     attcccaccg ggaacgaggc gccagtttat aaaaagccgt accgcgtacc tcactgtttg      2100
     cagcctgtta tgcagcagtt aatagatcag cagttgcgag atgatattat tgaggagagt      2160
     aacagtccct ggtccgcgcc gtggtactaa ttgcaaaaaa atcaccaaat ggcgagaaag      2220
     cgtacaggtt ttgctgtgat tatcgatttt taaataagaa gacagtgaca gacgcctacc      2280
     caatgccgaa tatcacggaa accctggata atttgggtca gtgtcagtat ttcacaacct      2340
     tggatttacg aagtgggtac caccaactcg aagtagcgcc agaagatcgg ccgaagacag      2400
     ctttttctac accagatggt cattatcagt ataaacgtat gccttttgga ctgaaaaacg      2460
     ccccagctac gtttcaacgg ttgctagata gtgttttacg gggtcttaag cctagacagt      2520
     gcatggtgta cttggacgac atcattattt tttccaagaa tttgcaagag catgtgtcac      2580
     atttgcgtga cgtgtttgac cgactgcttg ccgcaaagtt aacgctgagt ccggataagt      2640
     gccactttgc cttgaaggag gtccgttatt taggacatat cataggtcag gaaggaattc      2700
     gaacggatcc taaattggta caagctgtaa aagattttcc aacaccaaca actgtaaagc      2760
     agttacaatc ttatttagga gtagcaaatt tctacaggaa atatattcca aaatttgcag      2820
     aaattgcaag accccttacc cagttgttaa agaagggtgc gaaatttatt tggtctccgg      2880
     aatgcgattc agcattcgga aaattgaaag agttgttgac atctgctcct gtgctgattt      2940
     ttcccgattt caacaagcaa tttatactat cgtgtgatgc atccaattat gcattaggtg      3000
     tggtcctaag tcaggaaatg aatggttggg aacatcctgt agcttacgca tccaggcagc      3060
     tcaataacgc ggaaaggaac tattcaacca cagagcgtga gatgttggct ttagtttttg      3120
     gaataacata ttttagatgt tacttatacg gtagaaagtt caaggtagta acagaccact      3180
     cagcgctccg ttggctacta aatttgaagg acccatcctc gcgtcttgca agatggtgtc      3240
     tacgtttaag tgagtacgat tttgaagtaa ttcatcgacc gggtatctcg catgcaaacg      3300
     cagacggact cagtaggaaa atccgaagca tggaatgtgc aggaattgac agagaagact      3360
     ggaagaatgc acaacacgcg gacccggact gtcagcagtt tgccagccag ccgcaattct      3420
     gcttggagga cggaattctt ttaggtcaac acgtaacgga ccgcgaattg ttgtgccagc      3480
     tacgctgcgt aacgaaattc taaagcaagc tcacgattct attttggcag gtcactcggg      3540
     gaaaagagca actgagcgca gaatagcaca gaactactgg tggaaaacgc ggaaacagga      3600
     tgtagatcaa tatgtaaaaa attgtatccc atgtgcacag agggcgcaac tcagccgcca      3660
     acgaatagaa ctgcagagac ttccagaagc agataaacct agggccatga taggaattga      3720
     catttctgga ccactaattc aaacccctgc aggtaatcga tatatactca ctataattga      3780
     ccatttttct cgtttcgtag ccatggttgc aatacctgat cagcaagcaa cgaccgtagc      3840
     tcaggcgtta ctgaatgaat ggatactgaa atttggcgtt ccagacacta taatttcgga      3900
     tcaaggagca acatttatgg cagaattatt caaacaattg tgtcggttgt tgcacattaa      3960
     aaaattacgc actagcgcat atcatccgca gtcgaacggc agaacagaga gggtacatag      4020
     aacaatagct aaaatgttga gctattatgt taattcccaa cacaacaatt gggatacact      4080
     tctcaacgcc tgcacttgcg catacaacac caaagtgcac gaaagtactg gcttatctcc      4140
     atacgaggtg gtatttggtg aaaaaatgag atcacccttc gatttctgca tgaagcagca      4200
     aaaaggcgat atttcacaag tgaaggattt cgcaaagcgt atgaaaatgg tctggcgtca      4260
     agttaagaag atgaatacta aggccctaga acgtcaggaa agattataca atagtaaggc      4320
     aacattaccg aaatttcatg tgggacaatg ggtaatgtta tcaaatcctt gtgtaccgaa      4380
     agggaagacg aagaaatttg tttctcggta tgatggccca tatcaagtca ttgagatgac      4440
     atcacccgta aatgtcaagt tacagctacc aacccgtaca gtagttgtac atctcagcag      4500
     ggttagacct ttcaagggga atattgagtt ggtacctcct tgtcgatagc cgggaaggct      4560
     ccatcaaaaa agaagtggtt aaagagaatg aaaatggttc tgtaaaaacc ccaatacatt      4620
     actacgctct tagaccgcgc gcaagggcag agagctgata atgggtttct tttcttttct      4680
     gcaggagacg ggatacgccc gggtacgacg cgaccaggac atcagccagt ctcaccgtgt      4740
     taggcctact atgtgtcttt cagtgaagct tgaaggtacg tcctttaaca gcggtgatat      4800
     ttccagaggg actgacgtgg tggtatcaga tcaccactgg atttgaggat agagtgtgtt      4860
     ggcagtaaag gaaatagagg aattgcaagc tgtttaccag gttctagtct agtgatcaaa      4920
     ctgattcagt agtatacaag ggcaggctca gttacgacaa acatctgcag tgattccgcg      4980
     tgtacgtcgg aagaggggat ggttggatgc aggaggacga attttgaaaa cagtgttcgg      5040
     aacagcggat tctgaggacc ttaagaacat taatgaggcg ttacagcatt tacagagcga      5100
     cgtgagaggc aaccaggaga cattagactt gcatacgaca aggttgtcta gcctcgagaa      5160
     tgacgtctta aataatacta agcaactccg aactctagct gccacgttgt tatcgcacgt      5220
     tcaactatcg gcgaatgcaa caaaccgcga tttgaacgta gttaaggaac atctgggaaa      5280
     ggttgataga cagctgttaa ttgcaaagat gctacggagt ctacaagaaa gcataaccta      5340
     tgcccgtatt gaaacggcgg agttagaaga ggcattacta cacgccactc gtgggcactt      5400
     gtcgccagcg ttgctatcgc cagaacaatt tgaggacgga ttggagagga ttagagcaaa      5460
     attaccgtca ccactagcac ttttgtcgac cgacagagac aaagcactat ccatctatta      5520
     tcgcatggca tcggtaacaa gcagacaggt gggcacaagg ttggaggtta atatcaaaat      5580
     tccacttaca tgtgaaggmt gtagattcca gagttatgaa atacatacat atccgatata      5640
     ttgggaggca atgcgcaaga tggtacagtt aaaaatgcgg gacatattgt tggtatctac      5700
     agatagacgc actcacatac tactgtcagt gcaggaacta aatcagtgca gtataggacc      5760
     tgttactatt tgccccacaa aattaatgca tacagtttca aaatcttgtg agttttcatt      5820
     gttttgctcg aataatttaa ccaaggaatg cccgagagaa gttatagcag ggaatcagga      5880
     ttttttttaa gaaggtaggt cagcattggc tgttttcggt agcaaaccct acgattatta      5940
     tttacacatg ttatgaacaa ggacggcaaa tggaaacaca aagattggaa ctccatggtc      6000
     agggattgat aatcaatggc acggcatgtg acatttccgg acctactttt aggttacctg      6060
     ccacaatagt aggaacagtt accataggaa taaaacatac tttgatttat gtaccggatc      6120
     aaccgctgga aattttgccc caggaacatc ttacaatgtt gaatgattcg ttggactcta      6180
     ccttactcac ttccttagat caaatgattg ccgcacagca tggtcgtatt gctatgggac      6240
     gattgttaga acatgttcaa aattatcgcc agcaacagcg gaggcaaaca ataattatcg      6300
     gatcatcaac aactgcggct agtgtttttt gtataacggt aggattgttg tattatgtgt      6360
     ttaagaaaaa agtcgctcaa atcccattcc tgccatccct aaccctgaga atcccatcca      6420
     gcaagcttgg tactgagcaa actagtaagg tttaggagga cttgtcataa agacactgca      6480
     tcttgttcat ggactgtgtt tcacagtgag attctatttc ataaccgaaa aggtggaaga      6540
     gagacctgaa aattttaagt cagactgaat atagtgtagg aacatggtgc aataaggtta      6600
     aggtgtcatg aacagtttta gtactttgtg tttattcttt tttgatgaat aagtgtttgt      6660
     ttttgaatta gcaacatggt gtgttgggtg atgccttgtg aaattcgggg acgaatttct      6720
     ttttcgtacg ggggaggag                                                   6739
//
ID   Gypsy-32_LMi-LTR repbase;    DNA;    INV; 741 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-741
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 741 BP; 171 A; 216 C; 212 G; 141 T; 1 other;
     tgtagaggca tggagatatt tgttaatttt atcagttaac aagtgaagtt atattgtggt        60
     tttcatgagt acatgttcta cagcagaagg cggcagaagc agaaggtgtt gaaacaagtc       120
     tgctgatgac agtaaccmgg aaactgggac gacgcggtcg tcgccctgag accattgacg       180
     acggtatgca gagcctcgga gttttaccaa gtgggatcga caacacctag cagaaaagca       240
     gtattatagg gctgtactgg gcagtgggcg ttcgggacga atgcttgact ggaacgtctc       300
     tacgccggat gttgccgcca cgacccaaca gggcagcacg ccaccgacag cggcgtcaag       360
     tgaggacctt cagcggcgcg ctctggcgcc actcctccga cgtcatcacg cgggcgctgg       420
     aggcggggtc cccagcgggc gccgccagac accactggta gcatcagcct acatctgggc       480
     gggcgccccg ggcgtacagc aaggcggcgc gtgtcttcag ccggcgcgtg ccgtcagctc       540
     gactcaggga atcgagctgc cggcctggcg ccttagctgg cgcttccgcc tgccactcca       600
     acgcctgccc gacacgggca gaggagccat tcaaccacaa gaaactaata aagaaataaa       660
     ttgtattttt cccaggcacc acgagtctta atctgccact tccccacacc catccaatcc       720
     gctacggccg tccccgttac a                                                 741
//
ID   Gypsy-32_MoPha-I repbase;    DNA;    INV; 4453 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4453
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1110-1110 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..4450
FT                 /product="Gypsy-32_MoPha-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MAENQVNNPITLTNEQFVSLLQQIQISATNAPATNIA
FT                 HPQGNFSRCTSRFDGAKTSDVEAFIDSIVTYKDCTNISNENALKGLPILLT
FT                 DLAATWWQGVKTTVDTWETALELLRQTYGPKKPAYRVYRELFACVQKDDTP
FT                 SDIFLCKTRALLSKLPYETPLPENVQLDMVYGLMSYKIRKEISREKVTSFS
FT                 ELLELAREVEEMKAEELGKSPAQPKSPRKQENRPRCKYCKNFGHTVDECKN
FT                 LRKKQDDKTATPKKDQSDSHADDASEDNRHTQLAITCFGCGNPGFLRKNCP
FT                 KCAKKERPGKTESKSEFCSVDAPQVRARCRNRPILDVEILGARGTGLIDTA
FT                 AKLSVAGYTLYKVLVEKGQTFRETEMHIGLADGTSKKEKVLLTEVDVQVSG
FT                 RTIRTTFTVMINARNNFTLFGMDFIDDANIVLNIPQRFWYFADDHETHDLK
FT                 FESPSETPAILQLNYVSTLRDDEAQSLSHGQREXLVALLAANADIFALGGE
FT                 PTPYAEHVIDTGTHAPVASPPYRMSAPKREMLEKEITSMLEADVIEECESP
FT                 WAAPVVLRPKQDGSVRVCIDYRRLNAITRTDAYPMPRIDDLLHLAKKALYM
FT                 STLDLRSGYWQVKVKPEDRDKTAFTTPFGTFRFKRMPFGLKNAGATFQRMM
FT                 DRFKKGLKDAITIVYLDDIIVVSTSFDEHLSDLQKVFDRLREFKLRAKREK
FT                 CIFARPQVKFLGHVISNEGILPSEDKVEAILNLPSPKNVKHLLTFLQTASW
FT                 FRRFVPDFAGVAKPLTDLTKKNAIWIWTKDHEDAFVELKKLLTEAPILRQA
FT                 DETMPFTIRTDASDYAIGAVLLQGEGSDERPVEYASRLLIPAERNYSTTER
FT                 EALAVVWAVGRFRGYIDGAKIIIGTDHQPLRWLMSLKSPSGRLARWALSLQ
FT                 EYDMEIKYTPGKLNVVADTLSRPPCTEDTQGNCGVCSVSVDLPSEGAAKMR
FT                 EEQLSDPEVKKIVDAFEAKGDLDVANWTSRGYLMANGVLYRYAPMEDSEEA
FT                 QWVVPKSAIQRILYENHDAPTAGHHGVERTLSQISKRYFWPGMRKAVADHV
FT                 GRCPECERYKPTNLKPAGLLRTPAPSRRFEIIAMDLFGPLPVTAEGFHWIF
FT                 IVEDVASKWVELLPLKRATAEACARTLIDEVMLRYGIPRRIISDNGPQFVG
FT                 AVMQQVSYCLGFDQSLTPVYHPEANPVERKNRDMKTLLSILVQNEHSSWME
FT                 KLPSVRYAMNSAPTQATGVSPAYLTFARELRGPGDVQRDLREIITGENFVS
FT                 EVTPYLLKIADTLKEAVEVQELEQDRRKGLADESRRPSPDFQVGDLVLVKT
FT                 RVLSSTSQGVTSKFAPKRDGPYRIAKRVSPVSFQIADRTTGELLSVRHASD
FT                 LSPWKGVEGNVPSRPVRPLRKRGRPKGTTTLSRPKEVGSSLETTVRSKGG"
XX
SQ   Sequence 4453 BP; 1249 A; 1227 C; 1136 G; 840 T; 1 other;
     gtgacgccca acctcgaggc ccggtccacg accagggtcg cgttcaagaa ccaagacgtc        60
     gtcttcacaa gacccacaac gaccaacgac acggtcgcaa acacgggcga agacgcaagg       120
     aacagcgcaa gcgaaaacac agtcacagac gaggacaaag ataccgacga gagtagcgtc       180
     tgggaaaagc ggaaagagac aagaaaacaa gatggccgaa aaccaagtga ataatccgat       240
     cacgctaacg aacgagcagt tcgtctctct tctacaacag atacagatat ctgcaacgaa       300
     cgcacccgcc acaaacattg cgcacccaca aggtaatttt tcgcgatgca cgtctcgatt       360
     cgacggggct aagacgtccg atgtagaagc ttttatagac tcgatcgtca cgtacaaaga       420
     ttgcacgaac atatcgaacg aaaacgcgct aaaggggcta ccgattctcc tcacggacct       480
     cgccgcgacg tggtggcagg gcgtaaaaac gacggtagat acttgggaaa ccgcgctaga       540
     attactacgg caaacatacg ggcccaagaa gccggcgtac cgcgtatata gagaactgtt       600
     cgcctgcgtg caaaaagacg acacgccctc cgacatattc ttgtgcaaga ctcgcgcgct       660
     gctttcaaag ctcccgtatg agacaccgct gccggaaaat gtacagctag acatggtcta       720
     cggcctgatg tcatacaaaa tccgcaagga aatatcgcgc gaaaaagtca cgtccttctc       780
     ggaattactc gagctcgcga gggaagtcga agaaatgaaa gccgaagaat tgggaaaatc       840
     accggcgcaa ccgaaatcgc cgcgtaaaca agaaaaccgt cctcgatgca agtattgtaa       900
     aaatttcgga cacacggtag acgagtgcaa gaatcttcgt aagaaacagg acgataaaac       960
     cgcgacgcct aaaaaggacc agtccgactc tcacgccgac gacgcgtcgg aagataatcg      1020
     acatacccaa ctcgcgataa cttgcttcgg atgcggcaat cccggcttcc tacggaaaaa      1080
     ctgtccgaag tgcgctaaga aggaacgacc cgggaaaact gaatccaaat ccgaattctg      1140
     ctctgtagac gcaccccaag ttcgcgcgag atgcaggaac cggccgatcc ttgacgtgga      1200
     aatattagga gcgcgcggca ccggactaat tgatactgcg gccaaattaa gtgttgcagg      1260
     ttataccctc tacaaagtcc tcgtcgagaa aggtcaaacg ttcagagaaa cggagatgca      1320
     cattggatta gcggacggaa cgagcaaaaa ggaaaaggtc ctgctcaccg aagtggacgt      1380
     acaagtgtct ggccgaacga ttagaaccac cttcaccgta atgattaacg caaggaacaa      1440
     tttcacttta tttggcatgg atttcattga cgatgcgaat attgtattga acattcctca      1500
     acgattctgg tattttgcag acgatcatga aacgcacgac ctgaaatttg agagcccctc      1560
     cgaaactcct gccatcttac agctgaacta cgtgagcacg ttacgcgatg acgaagcgca      1620
     gagcctgtcc cacggccaac gcgagaamct ggttgcactc ttggccgcga acgcagacat      1680
     tttcgctcta gggggagaac cgaccccata cgctgaacac gtcatcgaca ccggtactca      1740
     cgccccagta gcctcacccc cgtacaggat gtccgcacct aaaagagaaa tgctggaaaa      1800
     agaaataacc tcgatgctag aagccgacgt catagaggaa tgcgaatctc catgggccgc      1860
     accggtggta cttcggccca agcaagacgg ttcggtcaga gtgtgcatcg actatcgccg      1920
     attgaatgcg atcaccagaa cggatgcgta ccccatgccg agaatcgacg atttgctgca      1980
     cctcgcgaag aaagcactat acatgtctac cctcgaccta cgatcaggat actggcaagt      2040
     gaaggtaaaa ccagaggacc gcgacaagac ggccttcacc acacctttcg gcaccttccg      2100
     ctttaagcgc atgcctttcg gcttgaagaa cgccggagct actttccaac ggatgatgga      2160
     ccgtttcaag aaaggtctca aggacgccat cacgatagta tacctggatg atattattgt      2220
     cgtctcgacc agtttcgacg aacacctaag tgacctgcag aaagtcttcg atcgcttacg      2280
     tgaattcaaa ctacgggcaa aaagagagaa gtgcatcttc gcccgccccc aggtgaagtt      2340
     cttagggcac gtcatcagca acgagggaat actaccgagc gaggacaaag tcgaggccat      2400
     cctaaaccta ccatctccaa agaacgttaa acacttactt acgtttctac agactgcttc      2460
     ttggtttcgc aggtttgttc cagatttcgc cggagtcgct aaacccctga cggacctcac      2520
     taagaagaac gccatttgga tatggactaa agaccacgag gacgctttcg tggaactaaa      2580
     gaagttactc accgaggctc ctatacttag acaggccgac gagaccatgc cattcaccat      2640
     acgcacagac gccagcgatt acgccatcgg ggctgtcctg ctgcaggggg aggggtctga      2700
     cgagagaccc gtcgaatacg ccagccgatt gctaatccct gctgagcgta actacagtac      2760
     tacggagcgc gaggctctcg cggtcgtgtg ggccgtcggg agattccgcg gctacatcga      2820
     tggcgccaag ataatcatcg gcacggatca tcaaccactg aggtggctta tgagcctaaa      2880
     atctccttca gggcgactcg ctcgatgggc tctgagtctt caagagtacg atatggaaat      2940
     aaaatacacc ccagggaagc tgaatgtcgt ggccgacacc ctgtcgaggc ctccctgtac      3000
     agaggacacg cagggcaatt gcggagtgtg ctcggtctct gtggacctcc cttccgaagg      3060
     agctgctaaa atgagggagg aacagctttc cgaccccgaa gtgaagaaga tcgtcgacgc      3120
     gtttgaggca aagggtgacc tggacgttgc caactggacc tctcgaggat atctcatggc      3180
     aaacggcgta ctctaccgct acgctcccat ggaggactcc gaggaagctc aatgggttgt      3240
     gccgaagagt gcaatccaac gtatactata tgaaaaccac gacgccccta ccgctggaca      3300
     ccacggcgtg gaacgaaccc tgagccaaat ctccaagaga tacttttggc ccgggatgcg      3360
     aaaggccgtc gcagaccacg tcggcagatg tcccgaatgc gagagataca aaccaacgaa      3420
     cctgaaaccg gccgggttac tgaggactcc ggccccttcc agaagattcg agataatagc      3480
     catggactta ttcgggcccc tacccgtgac agccgaaggg ttccactgga tcttcatcgt      3540
     cgaagacgtc gcctcgaaat gggtcgagtt gctcccgttg aaacgcgcta ccgcagaagc      3600
     ttgcgcacgg accctgatcg acgaagtcat gttaagatac gggattcctc gcagaataat      3660
     ctcggacaat ggccctcaat ttgttggagc ggttatgcaa caagtctcat actgtttggg      3720
     gttcgaccaa tcgctcaccc cggtatatca cccggaagcc aacccggtgg agagaaagaa      3780
     ccgggacatg aaaactctgc tttctatttt agtccaaaac gaacactctt cttggatgga      3840
     gaagttacct tcggtcagat acgccatgaa cagcgccccc acgcaagcca cgggagtctc      3900
     tcccgcttat ctcaccttcg cccgtgaact acgcggccca ggagacgttc aacgagacct      3960
     acgagaaatc atcaccggag aaaactttgt atccgaggtc acaccttatc tcctcaaaat      4020
     cgccgacacc ctgaaagaag ccgtggaggt tcaagagcta gaacaagacc gacgaaaggg      4080
     acttgcagac gaatccaggc ggccaagccc cgacttccaa gtgggagacc tcgtgttagt      4140
     taaaacacgt gtacttagca gcacgtctca gggggtcacc tccaagttcg ccccgaagcg      4200
     ggacgggccg tatcgcatcg ccaagcgggt ttctcccgtc agtttccaaa tcgctgacag      4260
     aacgactgga gagctgttgt cagttcgaca cgcttccgat cttagcccat ggaaaggggt      4320
     agaaggaaac gtgccctctc ggcctgttcg gccgcttcga aagaggggtc gaccaaaagg      4380
     aaccacgact ctttcgcgcc cgaaggaagt tggatcatcg ttggagacca ccgtccgatc      4440
     caaaggggga gtc                                                         4453
//
ID   Gypsy-32_MoPha-LTR repbase;    DNA;    INV; 305 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-305
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1196-1196 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 305 BP; 66 A; 88 C; 88 G; 60 T; 3 other;
     tgtagcgcga agggccccgt aacccggtcc aagtcagtgc gggcctgcgc actggcgggc        60
     gcatagcgcc gctcgcgtcg taccagggaa aggagggggg gggggagsca gtccccttgt       120
     ggccggagat agacacagac cggtcggttc cgcgaatctg tacctaaccc tcwaaatata       180
     ttcgacgtgt gttttacttt aattagcgtk cgttcttttc ctccgtggct cctctcacga       240
     tccttccgag agcggcaaat cccacaaacc cgaaaagata agagcgagga agcatcctcg       300
     ctaca                                                                   305
//
ID   Gypsy-32_MSe-I repbase;    DNA;    INV; 4876 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4876
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 909-909 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..4737
FT                 /product="Gypsy-32_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPFPCKRVATRRGQGQAADKEEPQPTTSDSEQEITFV
FT                 GPSAQASTPTPTAPVPAATSPTTDHMFKIMELFARSQAEANQKLLETIMAN
FT                 TTSASPEAGGVIKMKSAGNFSKCSARFDGTTGDAETLEAFIDAVLVFKECA
FT                 GVTDENAVRGLPMLLTGNAAVWWQGIKKDVHDWEDAIARLRGMYGIVKPAY
FT                 KLFREIFAYEHTLPERSEVFACKIRALISQLPYDLCDAARIDIVYGLLDRK
FT                 IRKRLPRETVNTFEQLIVKLRCVEESMAEVCCRAKTVSKPKISTKVHNNVP
FT                 NSARDSVYKPIPTPLAPNSASKPQRKRCSYCRNYGHDIDECRNYKNSMEKR
FT                 SSAGDQSIRCYGCGQLGVVKSKCHKCNNNNAKAPSDALSFNMIKCDDCYSD
FT                 SSVPDNSYTYNKTSPTDRSIAPYSDKRTYSGKHGCYSNYNTTVPVNFCDRL
FT                 RLVPECERIAPDSLSAVSTDIVDVRYSAPQNNTDHDQCHAVVSISVLGEAG
FT                 VAIMDTGATHCIASSLLHRLFQRAGVRFLKSQRNIRLADGNETLRDCYLYT
FT                 VMVKLQDREIPTTFIVIPGADARTLLGCDFIKRAGIAINLLEGKWSFTSTP
FT                 DRVYDFVRSYSVKSAGGADLLCTDASPLSLRPDEGAHLSEEQRAQMNEMIA
FT                 RYASRFAVEGEPTGFITHRIKTDEKQEPIASQPYRMSPAKVAILEKELDKL
FT                 QRADVIEECESPWAANIVLVPKKDGSARLCIDYRKLNAVTEPDRYPLPRMD
FT                 DVLHAAKTTNFMTTLDLQSGYFQVSVAEEDRDKTAFITPIGTFRFKRMPMG
FT                 LRNSGATFQRLMDRFKSNLPGTTLLCYLDDLIVLSDSFTKHLEDLQAVFDR
FT                 LELFNLRVNRTKSVFARDSVKFLGHLIVPGGIQVDPEKTAAINDMAKPTNL
FT                 KHLKCFLQTSSWFRRFIPNYAEIARPLTALLKKGSVWRWSVEEHSAFDHLK
FT                 QLLVSAPILRQADHTQPFILRTDSSGYCLGAVLMQGEGSDERPVEYASRLL
FT                 TQAERNYTTTEREALAVVWAVGKFRGYIEGAQIIVKSDHQPLKWLMSIKSP
FT                 SGRLTRWALTLQEFDLRIEYTPGKSNVIADTLSRPACTEEAGRCDLCHAVV
FT                 DVPSESVSNYRDLQLQDPDVKKIMEDLEATDEPFRGRPWADRGYIMSDGVL
FT                 YRYNPEPSDDDDACLVVPIGQRPKILFEYHDAPTAGHLGVERTLQRIASRY
FT                 YWPGMRASVTDYVKQCTSCQRYKVDARKPAGLVQSPAAAQRFEVVAVDLFG
FT                 PLPVTKSGNRWILIAEDVCSRWVELFPLQSATSILCAETLINEVFLRYGVP
FT                 RRLISDNGVQFISEVMQQVCFAFGIDQALTPYYHPEANPVERKNRDLKPQL
FT                 AAYVGQDHSTWDVHLAAVRFAMNSAVTHSTSFSPAMLMFGREIRAPADVVH
FT                 DMRTVLDGDRFVANFTPYLKRLTTVLIDARDAHEKAQAIQKRYADEKRRPA
FT                 PDYKVGDLVLLKTHGSNDTVRGQTPKFIPRRDGPYVIKEVLSSTTYRLENG
FT                 DGDTLGKYHVSQLTPFVGQSESPVREKRGRGRPRKNC"
XX
SQ   Sequence 4876 BP; 1253 A; 1178 C; 1261 G; 1183 T; 1 other;
     gtggcgccta actagcggcc gatcacgtag ccgagcctaa caagttcgtt agacatttat        60
     aatagttgtt ggagaagcat gccgttccca tgcaaaaggg ttgctacccg tcggggccaa       120
     ggccaggctg ccgacaagga agaaccccag cccacaactt cggattcgga gcaggagatc       180
     acctttgtcg gcccgtctgc ccaggcatcg acgccgacgc cgaccgcgcc ggtaccggcc       240
     gcgacgtcac cgacaacgga tcatatgttc aaaatcatgg agctattcgc caggtcgcaa       300
     gcggaagcga atcaaaaatt gttagaaacg attatggcaa acacgacctc ggcctcaccc       360
     gaagccggcg gtgtcatcaa aatgaagtca gcgggtaact tcagcaaatg ttcagcccgt       420
     ttcgacggaa caacaggaga cgcagaaaca ctcgaagcat tcatcgatgc ggtcttggtg       480
     ttcaaagagt gtgccggagt gaccgacgaa aacgcagtac gaggcctgcc gatgcttctc       540
     accggaaacg cagcagtctg gtggcaaggc atcaaaaagg acgtccacga ttgggaggat       600
     gccatcgcaa gactccgcgg aatgtacggc atcgtgaaac cggcgtataa actgttccgt       660
     gagatcttcg cctatgaaca tacactaccg gagcgcagtg aagtgtttgc ctgtaaaatt       720
     agggccctaa taagccagct accgtacgat ttgtgtgacg cggctagaat agatatcgtg       780
     tacggcttat tggaccgtaa gatacgtaaa cgtttacccc gcgaaactgt gaatacgttc       840
     gaacaattaa ttgtaaaatt acgctgtgtc gaggagtcaa tggcagaggt atgttgtcga       900
     gccaaaactg taagtaaacc caaaatatct accaaagtac ataataatgt gcctaacagt       960
     gctcgcgatt cggtctataa acctatacct acccccttag ccccaaacag tgcctccaaa      1020
     ccccaacgta aacgctgttc gtattgtagg aactatggtc atgatataga tgaatgtagg      1080
     aactataaaa atagtatgga aaaacgttct tccgcaggtg accaatccat acgttgttac      1140
     gggtgtggac aactcggcgt agtgaaatct aaatgtcaca aatgtaataa taataatgca      1200
     aaagctcctt cagacgcttt atcgtttaat atgataaaat gcgacgattg ttattcggat      1260
     agttccgtcc ccgataattc atatacctat aacaaaacat cgccgaccga ccggagcata      1320
     gcgccttatt ctgacaaacg tacgtattct ggtaaacacg gttgctatag taattataat      1380
     acaactgttc cagtaaattt ttgtgatcgt ttacgattgg ttcccgaatg tgaacgaata      1440
     gcacccgata gcctcagcgc cgtttctacg gatattgtcg atgtgagata ttccgcaccc      1500
     cagaataata ccgaccacga ccagtgtcac gctgtggtaa gcattagtgt tttgggggaa      1560
     gccggcgttg ctatcatgga cacaggagct acgcactgta ttgccagctc gttgctgcac      1620
     cgcttatttc agagagccgg tgtccgcttt ttgaagtcgc agcgaaatat acgcttagcc      1680
     gatggtaacg aaacgttacg tgattgttac ttatatacgg ttatggttaa attacaggat      1740
     cgtgagatac ctactacgtt tattgtgatc cctggggcgg acgcaagaac gcttttgggt      1800
     tgcgatttca tcaagcgtgc cggcattgcg atcaacttac tggaagggaa gtggagtttc      1860
     acctctacac ccgaccgcgt gtacgacttc gtgcgatcgt acagtgtaaa gtccgcagga      1920
     ggagcggacc ttctttgcac cgacgcctcg cctttgagct tgaggcccga tgaaggtgcc      1980
     catctgtccg aagaacaacg ggcccagatg aatgagatga tcgccaggta cgccagccgt      2040
     ttcgctgtgg aaggtgagcc tactggtttt atwacgcatc gcattaagac ggacgagaag      2100
     caagaaccca tagcttctca accataccgc atgtcacctg caaaggtggc cattttggag      2160
     aaagagttgg acaaactaca gcgcgctgac gttatcgagg agtgcgagtc cccgtgggca      2220
     gccaacatcg tcctggtccc taagaaggat ggaagcgcac gactttgtat agactatcgg      2280
     aagctaaatg ctgttacaga gcccgataga tacccgttgc cgcgcatgga cgatgtgctg      2340
     catgctgcta agacgacaaa cttcatgaca actcttgatt tgcaatccgg atattttcag      2400
     gtgtctgtgg cagaggaaga tcgcgacaaa actgcgttca tcactccgat cggtaccttt      2460
     aggttcaagc ggatgccgat gggcctccgc aattccgggg ctactttcca gcgcctgatg      2520
     gatagattta aatctaacct accaggtact actcttttat gttatctcga tgatctaatt      2580
     gtcctttctg attctttcac caagcacttg gaggacctgc aagccgtctt tgataggcta      2640
     gaattattta acttgcgagt gaaccgcacc aaaagtgtct tcgctcgtga ttctgtcaag      2700
     tttcttgggc acctgatcgt accaggcggt atccaggtgg accccgaaaa gacagctgct      2760
     atcaatgaca tggctaagcc gacgaatcta aagcatctca aatgtttctt gcaaacatca      2820
     agttggttta ggcgttttat acccaactat gccgaaatag ccaggccatt gacggcactg      2880
     ttgaagaagg ggagtgtttg gcgttggtcg gttgaagaac actccgcatt cgatcacctt      2940
     aagcagcttt tggtgtccgc gccgatattg cggcaagctg accacaccca accgtttatc      3000
     cttaggaccg acagcagtgg ctactgtcta ggggcggtcc taatgcaggg ggaggggtcc      3060
     gatgagcgcc ccgtagaata cgctagccgc ctgttaaccc aggctgaacg gaactacacg      3120
     acgactgaga gggaagcact agctgtagtg tgggctgtcg gtaagttccg cggttatatt      3180
     gaaggggcac agattattgt taaatcagac catcaaccgc tgaagtggtt gatgagcatt      3240
     aagtctccga gcggtcgttt gactcggtgg gcgcttactc tacaggaatt cgacctgcgc      3300
     atcgagtaca cccccggtaa gtcgaatgta atcgccgaca cactgtcacg ccccgcctgt      3360
     acagaggagg cgggccgttg cgacctatgt cacgcagttg ttgatgtccc gtcagaaagt      3420
     gtgtccaact acagagactt gcagctccaa gatccagacg tcaaaaagat tatggaggac      3480
     ttggaagcaa cggacgaacc gtttaggggg agaccgtggg cagaccgcgg ttatatcatg      3540
     tccgacggtg tactttacag gtacaacccg gagcccagcg acgacgacga tgcctgtctc      3600
     gtcgtcccga ttggtcagag acccaaaatt ctgtttgaat accacgacgc cccgacagca      3660
     ggtcatctag gtgttgagcg tactctgcag cgcatcgctt cgcgttatta ttggccaggc      3720
     atgagggcat ccgtgactga ttatgtcaaa cagtgtactt cgtgtcaacg ttacaaagtt      3780
     gacgcacgta aaccagcggg gttggtgcag tctccggctg cagcgcaaag gtttgaggta      3840
     gttgctgtag acctgttcgg tccccttccc gtcacaaagt cgggtaaccg gtggatcctt      3900
     attgccgagg atgtctgttc caggtgggtg gaattgtttc cattgcagag tgctacgagt      3960
     attctttgtg ccgaaacttt aatcaatgaa gttttcttac gctatggtgt tcctcgcagg      4020
     ctcattagcg ataacggcgt gcagtttatc agcgaggtaa tgcaacaggt atgctttgca      4080
     tttggtatag atcaggcgct gacaccttac tatcaccctg aggcgaaccc ggtcgaacgc      4140
     aaaaaccgcg acctaaaacc acagctagct gcttacgtcg gtcaagacca ttccacttgg      4200
     gatgttcatt tggctgctgt caggttcgcg atgaactcag ccgttacaca tagtacatcg      4260
     ttttctccgg ctatgcttat gtttggacga gagattcgtg cgcctgcaga tgtcgtgcac      4320
     gacatgcgca ctgttctgga tggcgacagg tttgtggcta acttcacgcc ctacttgaaa      4380
     cgtctgacaa cggtcttaat tgatgcaaga gatgcgcatg aaaaggctca ggcaattcag      4440
     aaaaggtacg cggacgagaa acgtcggccc gcacccgact acaaagtggg cgatctagtg      4500
     ttgctaaaaa ctcatgggtc caacgatacc gttcgtggtc aaacccctaa attcataccg      4560
     cgacgcgacg gaccttatgt cataaaagaa gtgttgagta gtactactta tcgcctagag      4620
     aacggcgacg gcgatacttt agggaagtat catgtgtctc agctgacacc atttgtcggc      4680
     cagtcggaat ctccggtacg cgaaaaacgt gggagaggtc gcccgcggaa aaactgttag      4740
     tcttttatgg gcaagtactt gccttgcctt tggggatgct cgtatacttt tgtgggtcgt      4800
     ttttttatat attttatagc tgtgtaaaaa gctattccaa acgcgtgggc gcattgtttg      4860
     gattagaggg ggaggc                                                      4876
//
ID   Gypsy-32_MSe-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-276
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 958-958 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 276 BP; 60 A; 66 C; 67 G; 83 T; 0 other;
     tgtaacgaag gtatccgctt tcggtttaaa tctcgagctc ttcgcggact cgtacgtata        60
     acgcactgcc attggctccc gatgacgtga tttacgcgct ccgccaatcg gagcgcgacg       120
     tgatgcttac gtgtgaactc tgtcacaagg tggcggtgga tgacaggcgc gcgcacgact       180
     agccccgtgc gatgtataca tatttgtctc ctaagtaatt gttttctccc aaataaatat       240
     agttttgatt gctgtacgag ttttcacttg tttata                                 276
//
ID   Gypsy-32_OrIn-I repbase;    DNA;    INV; 5320 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5320
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1573-1573 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..4491
FT                 /product="Gypsy-32_OrIn-I_1p"
FT                 /note="zinc finger, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MMNAQNESLKCFLSDLVKTLPQKETSKFLTLPEFNPS
FT                 IDGSEPRSWLATADLCLRDNPRTGSNLILSLSKALKGDAARWLAQISYPDM
FT                 TWDNFKLLFMSEFDSTVTPASLLITSLQSSPNENESFVSYASKMLGTLSSR
FT                 LGNLTNQELLVSLVMAHMSKFSNRISHVAYTEEVLSRERLLKELQALQSVK
FT                 RHSNSPRDNNDVKRPRYFTARETPICKFCHTKGHVISDCRKRQKGQSRTPS
FT                 SSQMTQKGVHQSSSQNKSFSCWTCGSTEHLARNCSQGSTSSRKQPQYRKQN
FT                 LPEKTVNLCEIAVPGSLTHKGQIFAFSFDSGSECSLMRDSVQSNFTGPIFN
FT                 TPVILSGIGLAKVTSKSQIVVEVIINDLPLQICFHIVPNVHITSDLIVGRE
FT                 ILTQGVKVILSNTSCTFIPADLPQLKSRDKPSLKDHLNPPIVHSQSEVNET
FT                 EQNRSEILNLESTESLEDLIVESVQHFNSDKPTENIPTSKFDNIITEIPAD
FT                 RRPELLAILNKYDDYFTEGLPRTRVKTGELLIRLIDPSKIVSRRPYPLSPV
FT                 DKKALREHIAELEAAGIVRKSSSPFASPILLVPRKNGKFRMVCDYRMLNSN
FT                 TVAEHFPLPLIKDQLARLAGARFMTTLDMANGFHAIKCHPDSIEKTAFVTP
FT                 EGQYEFLTMPFGLKNASSVYQRAVTTALGPLANSYVTAFIDDLMITAPTID
FT                 ESLSRLDTVLNVLTQSGFSIKPSKCTFVMTKTNYLGFEISSGEIRPSSSKV
FT                 QALKALPPPSSVHSLRQFIGLASYFRQFIPNFSIIAKPLYELLSAKSNLIW
FT                 LPQHEEARQKVISYLTTEPVLMIFDPQYPIELHCDACSIGYAGILINIVNK
FT                 RPHVVGYFSKRTTPSESLYHSYRLETLAVVRSVQHFQSYLQYQKFKVVTDC
FT                 QSLKESYQKQNLNPMVHRWWCYLQAFDFSMEYRSSKRMQHVDYLSRHPLSD
FT                 DTLRVEVVAISDDPNDKSIEFPLSSSNLSSEQKEDSCATNVVSPIPECTPV
FT                 MEVNLLELPDNWILLAQQQDPEINDIKNKLQNDEFPPDLRQTYEIRSGILC
FT                 RKVQRNSRSRTVPILPHSHKWSIVYNFHDNLSHVGWEKTLEKLAEFYWFKH
FT                 MSKYVRNFVENCLTCKIAKTTSGKTQIRLHPIPKVAVPFHTVHIDITGKLS
FT                 GKNDSKEYVVVLIDAFTKFVLLHHTRRLDTANVIQALQHLISLFGTPTRLI
FT                 ADQGRCFASREFKEYCNQNRIELHLIATGAARANGQVERVMSVLTNMLTVT
FT                 ELGEKTWQESIPDVQLTINCTYNRVTKASPLEMLMGKVGRPSSLITPTDEV
FT                 VDNNAINLEEVRDSASRNMLKSAQYDKERFDKNKARIKSLSVGDHVLIQNE
FT                 PRNQTKLSPKFKGPFKIIEVLTNDRYLLQSLRGNRKYTYSHDRLRKVPDLA
FT                 CDLGSAVNPDDPPAGPSAPASG"
XX
SQ   Sequence 5320 BP; 1539 A; 1052 C; 1055 G; 1674 T; 0 other;
     tcagaagtgg gatatgaatc aaacaacgat cacaacatca acgaagctga acagaatact        60
     acgcaatatc ttgagcgccg ccatcttgag ccagaacgcc gccatcttga atctactact       120
     acgcaaaagg aaggtcagtc ggattcggat aattttcttt cggcccaaag tttgataaaa       180
     ggaatgatga atgctcaaaa tgagtcccta aagtgttttt tatcggactt agtaaaaaca       240
     ctccctcaaa aggagacttc gaagttctta accttaccag aattcaatcc atccattgac       300
     ggttccgagc cacggtcatg gctggccaca gcagatttat gcttacgtga taatccacgc       360
     acgggaagca acctaatttt gtcattgagc aaagcgttga aaggagacgc agctcgttgg       420
     ctagcacaga tatcatatcc agacatgacc tgggacaact tcaaattact gtttatgtcg       480
     gaatttgatt caactgtgac tccagcatct ttgcttataa cctctctaca atcgtcacct       540
     aatgaaaatg aatcttttgt ctcgtatgct tcgaaaatgc ttggaactct ttcttcacga       600
     ctcggaaatc ttacaaatca ggaacttctt gtttctttag taatggccca tatgtcaaaa       660
     tttagcaaca ggataagtca tgtagcttat acagaagaag tattaagccg ggaaagactt       720
     ttaaaagaac tacaagcgtt acaatcagta aaaagacatt caaattctcc tcgagataat       780
     aatgatgtaa agagacccag atattttact gctcgtgaaa caccgatttg caaattttgt       840
     catacgaaag ggcatgtaat atcggattgt cgtaagcgac aaaaaggaca atccaggaca       900
     ccatcttcat cgcagatgac tcaaaaggga gtacatcaga gttcttcgca gaataaatca       960
     ttttcttgtt ggacatgtgg atcaacggag catctggcaa ggaattgcag tcaaggatcg      1020
     acttcatcga ggaagcagcc gcagtataga aagcagaatc ttccggagaa aacagtcaac      1080
     ctgtgtgaaa tcgctgttcc tggctcgctt actcataaag gtcagatttt tgcgttttct      1140
     tttgattctg gttctgaatg ttctttaatg agagattccg tacaatcaaa ttttactggt      1200
     cctattttta atactcctgt catattgagt ggtattggtt tagccaaagt aacgagtaaa      1260
     tctcagattg tagttgaagt cattattaac gatttacctc ttcaaatatg ttttcatatc      1320
     gttccgaatg ttcatattac gtcagattta atagtgggaa gggaaatcct tacccaagga      1380
     gttaaagtaa ttttgtccaa tacttcttgc acatttatac ctgcggattt accccaatta      1440
     aaatcacgtg acaaaccaag tttaaaagac catttaaatc cccctattgt tcacagtcaa      1500
     tctgaagtta atgagacgga acaaaataga tctgaaattt taaatttaga aagtacagag      1560
     agtttagaag atttgatagt tgagtccgtt caacatttta atagtgacaa accaaccgaa      1620
     aatattccta cttcaaaatt tgacaatatt attaccgaga ttcctgccga ccgtagaccc      1680
     gaattgcttg ccattctgaa taaatacgat gactatttta ctgaaggatt acctcgaact      1740
     cgtgtaaaaa ctggtgaatt gctcattcga ttgatagatc cttccaaaat tgtttctaga      1800
     agaccttatc ctttatctcc tgttgataag aaggctttgc gtgagcatat tgctgaactt      1860
     gaagctgcgg gcatagttag gaaaagtagt tctccttttg ctagtccaat tttacttgtt      1920
     cctcgtaaaa atggaaagtt ccgtatggtc tgtgattata ggatgttgaa ctcaaatact      1980
     gtagctgaac attttccgtt accattaatt aaagaccaat tagctcgctt agctggtgct      2040
     cgctttatga caactcttga catggcaaat ggatttcatg ccattaaatg ccatccagat      2100
     tctattgaaa agacagcatt tgtaacccct gaaggccaat atgaatttct taccatgcct      2160
     ttcggattaa agaatgccag ttcggtatat caaagagctg taacaacagc actaggtcct      2220
     ctagcgaatt cttatgtaac tgcttttatt gatgatttaa tgataactgc ccccacgata      2280
     gatgaatctt taagtagact agatacggta ttaaatgttc ttactcagtc tggattctcg      2340
     attaaaccat ctaaatgcac ttttgtgatg acaaaaacta attatttagg atttgaaata      2400
     agctcaggtg aaatacgtcc tagttcaagt aaagttcaag ctcttaaagc gttacctcct      2460
     ccatccagtg ttcattctct aaggcaattt atcggtcttg cttcgtattt taggcaattt      2520
     attcctaatt tttccataat cgccaaacct ctctatgaat tgttgtccgc taaatcaaat      2580
     ttaatttggc ttccacaaca tgaagaggcg cggcaaaaag ttatttctta cttgacaacc      2640
     gaacctgttc tcatgatttt tgatccccag taccccatag aactgcattg tgatgcttgc      2700
     tcgattggtt atgctggaat tttgattaat attgtgaata aacgtccgca tgttgttggt      2760
     tacttttcta aacgtacaac tccaagtgaa tctctgtacc acagttatcg tttagaaaca      2820
     ttagctgtcg ttaggtcagt tcaacatttc caatcttacc ttcagtatca aaaatttaaa      2880
     gtcgtcacag attgtcagtc cctcaaggaa agttatcaaa aacagaatct taatcccatg      2940
     gtgcacaggt ggtggtgcta ccttcaagca tttgattttt cgatggaata tcgatcttca      3000
     aagagaatgc agcatgtaga ctatttatct aggcacccac tttcagatga tacgttaaga      3060
     gttgaagttg ttgcgatttc tgatgatcca aatgataagt ccattgagtt tccgctttct      3120
     tcatcaaatt tgtctagtga acaaaaagag gatagttgtg ctacgaacgt tgtttctcca      3180
     attcccgaat gtactccagt tatggaagta aatttgttag aactgccaga taattggata      3240
     ctgctagcgc agcaacaaga tcctgaaatt aatgacatta aaaataaact ccaaaatgat      3300
     gaatttcccc cagatttaag gcaaacttat gagattaggt caggtattct ttgtagaaaa      3360
     gtacagcgaa attcgcgttc tcgcactgtt cccattcttc ctcattcgca taaatggtcc      3420
     attgtgtaca attttcatga taatttgtcc cacgttggat gggaaaagac gttagaaaag      3480
     ctagctgaat tttattggtt taaacacatg tcgaagtatg tacgaaactt tgtggaaaat      3540
     tgtctcactt gtaagattgc taaaacgact tctggaaaaa ctcaaattag gttacatccg      3600
     attccgaagg ttgctgtacc ctttcatact gtgcatatcg atattacggg caaattaagt      3660
     ggcaagaatg attcaaaaga atacgttgtc gtcttgatag atgctttcac taagtttgtt      3720
     ttactgcatc atactcgcag gttagacaca gcaaatgtca tccaggctct gcagcattta      3780
     atttctcttt ttggaactcc tactcgttta atcgccgatc agggcagatg tttcgctagt      3840
     cgtgaattta aggaatattg taatcaaaat cgtatcgaac tccatttaat tgctactggt      3900
     gctgctaggg caaatggaca agttgaacgt gtcatgtcag ttttgacgaa catgctaact      3960
     gtgactgaac taggagaaaa gacttggcaa gagtctattc cggacgtaca actgaccatt      4020
     aattgcactt ataatcgggt gacaaaggcc tctccacttg agatgctgat gggcaaagta      4080
     ggcagaccat cttctttaat tactcccact gatgaggtag ttgataataa tgctattaat      4140
     ttagaagagg tgcgcgactc tgcatctcgt aacatgctaa agtctgctca atatgacaag      4200
     gaacgttttg ataaaaataa agctcgaatt aaatctctct ctgttggcga tcacgtacta      4260
     attcagaatg aaccacggaa tcaaacgaaa ttaagtccga aattcaaggg accatttaaa      4320
     atcattgaag ttttgactaa tgatcgctat ttgcttcaat ctttgcgagg caatcgcaag      4380
     tacacttact cgcatgatcg tttaagaaaa gtacctgatt tggcttgtga tctaggttct      4440
     gctgtgaatc ctgatgatcc tcctgctggg ccttcagcgc cggcatccgg atgaagcctt      4500
     aaatgttttg ttgatgacct tgcatggagc gcaaccgttt atgtaattct taagcattca      4560
     caagttccaa tgtttttcct ttttatggct ctgtaatgat ttctaagtaa tgataataat      4620
     aatgataatg ctaatggaat gccttttatt tacacatttc cgcaaccata ttgttaattt      4680
     caagagagag catatgacga catggatatg cagtatccgt tgatgacagt cagtatgact      4740
     cggtgtggca gtcgtttatg gcatagctct gtctgtcttc gtaggttata actgcgtacc      4800
     gctggggaga gatgatttct gattgtaagt cgccggtgca ttctccgtca cggggcagtg      4860
     ctcaaccata gttgtgtaag tcgctgacgt gttcgggttg tagggcggtg ctaattgttt      4920
     cttctctgct ccggtgtgtc cagttcgttt ggtatgtctt tgctcaagtg tggagcaaga      4980
     gaccgttcaa gatacatggt gctgtatccc gtttgccaga gctgtgtgca tcaactttct      5040
     gttcataccg tttgcatacc tgggttggta tttcgtcatc tctcgtgttg gaactgtaac      5100
     ttgtgtttgc catcgcttgt gcatgtttgg cacttgcgac tcccgctgtt gaggcatgtt      5160
     tcacgttgta gctcatggat ggtccgttgc ctctgtggct tctcaaattt tttgtgctca      5220
     gtttgcgcat gtttgtcagg aagcccgagt gtttgctact gttttcccgt ttcttttcca      5280
     gacccagtgt ccgagacgtc cactgtgtca ggattggccg                            5320
//
ID   Gypsy-32_OrIn-LTR repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   15-JAN-2021 (Rel. 26.03, Created)
DT   15-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-389
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1538-1538 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 389 BP; 121 A; 73 C; 80 G; 115 T; 0 other;
     tgtcgacgac gaagaaaatt aagaaaattg ggaaccatgc ttagagggca gcacaaatca        60
     agaagcgaaa gagagagagc gctgtagccc atcaccggct ttcacccccg agacagggca       120
     agaaacaaaa aggacagtca gtctctttgt ctccgttcga gtggaaccgt caaaagttgt       180
     aatagtctca aagtgggagt tagccatttt ttatttgaaa acctaaacca atttttgttt       240
     tctaaagtac tttttgtgtt atagaactta attaaatttt atttgtgtaa gtttagtttt       300
     aattgttttt ttttacgctc gacatggagc acctcgaaga aggagaaatc cttgataatt       360
     tttcatcgcc caatgtgtct cccccgaca                                         389
//
ID   Gypsy-32_SI-I repbase;    DNA;    INV; 4950 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_SI_;
KW   Gypsy-32_SI-LTR; Gypsy-32_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4950
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 454-454 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3629-3973] - Integrase core
CC   'TTAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..1082
FT                 /product="Gypsy-32_SI-I_2p"
FT                 /translation="MDISEDFTAASPARAEKRPLRKRMRPRTPAKPRLSTE
FT                 ANSLRAVAVELRQLRAERQRQRQREEEMQALLQERDERLQRLEERLQHFSG
FT                 QSLPFSVCPPTAEIPRDSGNAGVNFKLKPDIFDGSVPLREYFTQFELIAQA
FT                 SNWEDSTKAVALASSLRGKARSVLDGITELENLSYGEIKSKLELRFGEGHL
FT                 SQTFYAQFTNRKQKFGEDLASLGADLERLSRLAYPECPQEVRDKIACAQFI
FT                 IAVSDGFLRRTLQLEGISSLRSAIERAKMIKAIQESSFSRVSSNKDGGRRK
FT                 FYPREQMREGNGKEGISSQDSKQKNFNKWRADKECWQCGAKGHYRSECPAV
FT                 SSLTKGN"
FT   CDS           1049..2887
FT                 /product="Gypsy-32_SI-I_1p"
FT                 /translation="MSCGFFFNKGKLGLVELSGVDSTIRRETPTFSEIKNC
FT                 RKIKLKDYFCYPGFIDGQDCIFKIDTGSDVSILNKKFVPPHIEDVSVNSLQ
FT                 LRYPTGEKVPIISKKEVKIVLGDHSLEFPVFIAEIEDDCILGVDFLCKLNL
FT                 EGVFDLNFCSPKSKEIQKNFCARISRGTVPDFLEDLFLRSSENLDDSQKKL
FT                 FAEFLSEFQDVFSGEIVAGNCKIIEHSIQTENCSPIKQVPRRVPLQMREEV
FT                 EKIIEEMRQQGVIEESNSPWTSPAVLVKKKDGSIRFCVDYRKLNNVTLKDS
FT                 YPIPRIDDLMDRFSGNSWFSTLDLKSGYWQVKIRPEDREKTAFSIGKGLWQ
FT                 FTVMPFGLCNAPATFERLMEKVFQQLLFKICMVYLDDVIIFGKSFEEMLIN
FT                 MKKVLSSLRAANLKLNPKKCTFFGREVKYLGHVVSEKGITTDPEKIVAVRD
FT                 WPIPKNKKQVRSFLGFCSYYRKFVRGFSLIAKPLFVLTENLSKFRWDDACQ
FT                 EAFELLKKFLTTSPILSFPTEEGRFILDTDASDRGIKAVLSQNQGGVEKVI
FT                 AYFSKVLSKSERNYCVTRRELLAIIESIKFFHHYLYGQNFLIRTDHASLSW
FT                 LLSFKNVEGQRWPVG"
XX
SQ   Sequence 4950 BP; 1468 A; 809 C; 1152 G; 1514 T; 7 other;
     ttttgggggc tcgtccgatt tcggaccacg taatggacat ctcggaagat tttacggcag        60
     cgtctcctgc gagagcggag aaacgtcctc ttcgtaagag aatgcgtccc cgtacacctg       120
     caaaacctcg actctccacc gaagcaaatt ctcttcgggc ggtcgccgtg gagttgcgtc       180
     agcttcgtgc tgagagacaa aggcagcggc agcgtgagga ggaaatgcag gcactgctcc       240
     aggaacgcga cgagagactt cagcgtctag aggagcggct gcaacatttt tcaggccagt       300
     cgttgccttt ttctgtttgt cctccgaccg cggagattcc tcgggattcc ggaaacgcgg       360
     gcgtcaattt taaattaaag ccggatattt tcgacgggag tgttccgctg cgcgaatatt       420
     ttacacaatt tgaattgatt gcgcaagcga gtaactggga agattctacg aaagcggtcg       480
     cgttagcctc gagtttgcgg gggaaagcgc gttcagtttt agacggaata acggaattag       540
     aaaatttaag ttatggagaa attaaatcaa agctcgaatt acgttttgga gagggtcatt       600
     tatctcaaac tttttacgct caatttacga atcgtaaaca aaaatttgga gaagatttag       660
     cttcgttggg agccgattta gaacgattat cacgtttagc ttatccggag tgtcctcaag       720
     aagtgcgcga caaaattgct tgtgctcaat ttattattgc agtctctgac ggatttttga       780
     gacgcactct tcaactagaa ggaatttctt ccttgcgttc tgcaattgag agagcgaaaa       840
     tgattaaagc tattcaggag agtagttttt ctcgcgtttc ctcgaataaa gatggcggaa       900
     ggagaaaatt ttatcctaga gaacaaatga gagaaggaaa cggaaaggaa ggaatttctt       960
     cacaggattc taaacaaaaa aattttaata agtggagggc cgacaaagaa tgttggcagt      1020
     gtggtgcaaa gggacactat agatcagaat gtcctgcggt ttcttcttta acaaagggaa      1080
     actaggtttg gtcgagctta gcggggtcga ctcgaccatt cgaagagaga ccccaacatt      1140
     ttcggaaatt aaaaattgta ggaaaattaa gttaaaagat tatttttgtt atcctggttt      1200
     tattgatgga caggattgta tttttaagat tgatacaggg tcagacgtct ctatattaaa      1260
     taaaaaattc gtaccaccac atattgaaga tgttagtgtg aattctttac aattaagata      1320
     tcccactgga gagaaagttc ctataatttc taaaaaggaa gttaagattg ttttaggaga      1380
     tcatagctta gaatttccgg tctttattgc agaaatcgaa gacgattgta ttcttggagt      1440
     tgattttctt tgtaagttaa atttagaagg agtttttgat ttaaattttt gttctccgaa      1500
     atctaaggag atacaaaaaa acttttgtgc tcgaattagt agaggtacag ttccagactt      1560
     tcttgaggat ctttttctta ggagttctga gaatttggat gattctcaaa agaaactttt      1620
     tgcagaattt ctttcggaat ttcaggacgt cttctcagga gaaatcgttg ctggaaattg      1680
     taaaattatt gaacattcta ttcaaacaga aaattgttct cctattaagc aagttcctcg      1740
     tcgagttcct ttacaaatga gagaagaggt ggaaaagatc atcgaagaaa tgaggcaaca      1800
     gggtgttatc gaagaatcaa atagtccttg gacctctcct gcagttttag ttaagaaaaa      1860
     agatggttca attagatttt gtgtagacta cagaaagtta aataatgtga ctcttaagga      1920
     ctcctaccca attcccagga tagatgattt aatggatcgt ttctcaggaa attcttggtt      1980
     ttccactctg gatctcaaga gtggttattg gcaagttaaa attcgtcctg aggatcgaga      2040
     gaaaactgct ttttcgattg gaaaagggtt atggcagttt acagttatgc cttttggact      2100
     ttgtaatgca ccggctacct ttgaacgtct tatggaaaaa gtttttcagc agctactttt      2160
     caaaatctgc atggtttatc tcgacgacgt catcattttc ggaaaatctt tcgaggagat      2220
     gttaatcaat atgaaaaagg tcctttcgtc tttacgagca gcaaatctta aacttaatcc      2280
     taaaaaatgt actttcttcg ggagagaggt taaatatttg ggtcatgtcg tctcagagaa      2340
     gggaatcacc accgaccctg agaagattgt tgcagttagg gattggccga ttcctaaaaa      2400
     taaaaaacaa gtccgaagct tcttaggctt ttgctcatat tatcgaaagt ttgtgagggg      2460
     attttccctt attgctaaac ctttatttgt cttaactgaa aacttgagta aattcagatg      2520
     ggatgatgcc tgccaagaag ctttcgagtt gttgaaaaag tttttaacta cttcgccaat      2580
     attatcattt cctaccgagg aaggaaggtt tattttggat acagatgctt cggatcgtgg      2640
     aataaaggcg gtcttatctc aaaatcaggg aggagtagaa aaagtgatcg cttattttag      2700
     taaggtgttg agtaagtctg aaagaaatta ttgtgtaact cggcgtgaat tattggcaat      2760
     tatagagtcg ataaaatttt ttcatcacta tttgtacgga caaaattttc ttataagaac      2820
     agatcatgct tctttaagtt ggttactttc ttttaagaac gttgagggac aacgttggcc      2880
     cgttggttag aacgtcttca agaatataat tttatagtag aacatcgaaa aggaaagtta      2940
     catgggaacg ctgatgtctt gtcaaggcgc ccttgtgctg aaaaaggctg taattattgt      3000
     gctaaagttg atctgaagga gaaaaattct tcagtggaat tagtaggacg aattgttttt      3060
     ggggaaaagc atcttgaaaa ttggaaaaat tctcagaaag acgatccttc gttgtctatt      3120
     ttcttgctag gaaaagggct tggaaggcgg ccgactcgtc aggagattgc ctctgaagac      3180
     gaaacttcta aagtttaatg gtctatttgg gattctctca ttattaaaga tggagtgttg      3240
     tttagaaaat gggaatctcc agattcaaaa cgtcaaattc ttcaaataac tgtcccacgg      3300
     agtcaggtac agcgtgtttt ggaggaagct cacgattctc cttctggtgg tcatttcggt      3360
     gttaataaaa ctttagataa aattcgaaaa agattttatt gggcgacttg taagcaggat      3420
     gtggaacact ggtgcagaac ttgtgttgtt tgtttatcga ggaaaggtcc ttccaataaa      3480
     ggaaaatcag cattgcaaat ttataattct ggttgaccct tcgaaagaat ccagatggat      3540
     attttaggtc cacttcccca atcttcttcg agaaataaat gtctcttagt tattattgat      3600
     tgtttcacaa aatgggtaga ggcattaaaa aatttcaaaa actgttaccg aagtttttgt      3660
     aagtcaaata atttctcgtt ttagtatttc ttcggagtta catactgatc aagggagaaa      3720
     ctttgattta caaatgtttt cagaattggc acgtttgctt ggaataagga agaccaggac      3780
     tactcctctt catccgcagt ctaatggtca agtggaacgt caacatcaaa ctttgtcgga      3840
     ctatttagca aaatttatta cagaaaatca taaagactgg gatcggtgga ttccaatgag      3900
     tctttcagcg tataggtctt caaggcatga ggccactggt ttaacacctg cggaaatgaa      3960
     ttttggtagg gaattgagac tgcctttaga ttttctccgt gcgaaacttc ctggttccga      4020
     ttcagttaat tctaggggag attatgtttt gaatataaga gaaaaacttt ctcagatttg      4080
     tatcggagtt agacaacgtt tgaatgttag gtctcaaaaa atgaaagagg tttatggtcg      4140
     taaggctcgc tctattcact ttgagtctgg acagaaagta tggtttcaca atcctcgtag      4200
     gaaaataggt aggtctccta aactgcagag tagttggaaa ggagcagttt gaaattgtca      4260
     aaaggttaaa tggcgtagtt tatcgtatac ggaaatcgcc taggcataaa aataaagtgg      4320
     tacacttaga taggttggct tcatttcaag agagataaat tttctttagg aaaaaaatac      4380
     tctgagctta gttaaattcg ttatcttata aaattgtttt cttgcatgta tttctgtttt      4440
     ttttttaagg caaagagtcc tgttcagacg attgctggga gccgcttctt tttgggcgtt      4500
     tgagaatgcg ctgaaattgt aaggacaant cttctngttg tttaaacgga aaagaagact      4560
     gcctcgcccc aggtttttga gccgtngttt tccctgtggg actgagggca aatgccgagg      4620
     caggagcttg gtgagtcttt cgagacgttg ggtccacggt agataccccc accttgctcg      4680
     aagttatttt gaagaaagna gattcctcag aagagttctt cggngagaat ttctctgaag      4740
     aggttgttct tcgagagagg aggatttctt ctgtgatcaa gagttccagg atgtcgtttg      4800
     gatccaagga agagtggctc ggaatcttga agcagcagct caagagggag agcagtaacg      4860
     ccnagatggg tcctngagac gacaggaggt ccgaaaatat aagaagactt catgcttgtc      4920
     gggacgacaa gcttttaaaa aggggggcag                                       4950
//
ID   Gypsy-32_SI-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_SI_;
KW   Gypsy-32_SI-I; Gypsy-32_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-256
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 455-455 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 256 BP; 57 A; 50 C; 69 G; 78 T; 2 other;
     tgttgtgccc gttcggccga gcttgagaag ctggccgaag gaagatctat cgatcggaca        60
     gaagaagcgc ggccggcttt tgttctgttc tggacgcgna gctgtcaagc gacatttgaa       120
     taattccgct accaattaat tgtatatagt tacttaatta aagtcagtgt tcttttgtac       180
     aaaagagagn gtgtagttat ttcgtgttgt gcgctcgcgc gagtgttttt gcgtgctcgt       240
     ctcgtcgagc ataaca                                                       256
//
ID   Gypsy-32_SiCu-I repbase;    DNA;    INV; 4012 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4012
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5054-5054 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..3985
FT                 /product="Gypsy-32_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAVSKIQPFNASTDDVESWTSVLQNYLIASGVEKDKD
FT                 DASKKKASAILLSAVGVSTYSLLKDLLSPDKPEEKSFDELVNVLTTHFKPA
FT                 PKAIAERYKFFNRRQLPGESVSVFLSELRKMAVTCKFEKLDTSLRDQFVVG
FT                 LSSEAAQRELFKEDDNLKLQDAVKIALSQEAAEASTKMIRGVNTMSIVSQS
FT                 SSSEQTNKVNSGKKFQKWSKSSGGKSENNSSEQSCSKCGGKHSPKQCPHKD
FT                 VECYKCHRMGHFSKFCRSKSHAKAEGKGNQSDSSVNNVRHKESPPIQVAVT
FT                 INGKLVIMELDTGAGRSFISREVWKKLGSPKLKSSKIKFTTFTGEDFEAKG
FT                 QLQCQIDYHNQSVNHSIFVVDNDSSCLFGRDLLYKIQMNWSEIKSQCSQVN
FT                 QINGVTTLSALLEEFKDVFDKPVGVMQNFKAKLVLKDDAVPRFFKARPVPY
FT                 AVRSQVDEELQRMEAAGVITRVEHSDWASPLVVVPKSNGKVRITGDFKKTI
FT                 NAQLCVNQYPLARVDDLMETISGGATFSKLDGSDAFHQVEVEESCRKFLVI
FT                 NTHRGLFQYNVLPQGIASSPAIFQEMMDNMLRGISMTGAFVDDAITTGRDD
FT                 NQHLINLKKIFVRMRAANYRLSRSKCQFMEKRIKFLGSVICQDGIRTDPEK
FT                 VEAIMSMKEPENVSEVSSFLGLVNFYAKHIPHLSTICEPLNALKRKEAEGW
FT                 KWTGKCRAAFNQVKKSVTEGSILTHFDQSIPIGLACDASSVGAGVVLFHRF
FT                 PDGTEKPIAYASKTLTSAERNYSQIEKEALSIYFGVNRFMKYLFGVRFILV
FT                 TDHAPLLAIFGSKRDVPSLAATRLHRWSLFLSGFSYDIEYRSTHQHGNADA
FT                 LSRLPVSNTYEEDEDVSVQIKRIQEENPITSRKVRHQTSRDTVLSKVMHYV
FT                 QSGWPEKQSQVPEAVRQFFSHRYEYTVEQGIIMWGIRVVVPSSLQQSVLSQ
FT                 LHDTHPGIVRMKSLARQFVWWPGIDNDIESVVKSCHTCAVNRDNPAAAPLH
FT                 PWSFPEKSWQRIHVDLAGPFLHNMWLIVVDAFSKWPEVVPLGKDTSSRKVI
FT                 HSLREIIARFGIPDTIVSDNGPQFTSDEFEKFCTSNGIRHTTSSAYHPRSN
FT                 GEAERFVRTFKSGLSCHAGGDLNLSLCDFLLTYRITPHATTGVSPQEMMLK
FT                 RKPRTLLDLLRPDADSNVRKSQEKQVENDKKRRLRQFTVGQDVWIRTFSKN
FT                 QPGWSLGKVVQACGPLSYKVDVDGRVYKRHVDHMFDAVVKSRSSSPTPPED
FT                 DEDVSLVQVPVSEEDAEEEERQENERRYPERIRRVPKRYPD"
XX
SQ   Sequence 4012 BP; 1194 A; 834 C; 953 G; 1031 T; 0 other;
     tatttggcga cgagttagta acccagttaa attttgtcgt tttaattttc ggtttgttgt        60
     tcagtcgtca ttagtcataa tggcagtctc aaagatccag cccttcaacg cgtcgacgga       120
     tgatgtggaa tcctggactt cagtgctcca aaactattta atagcttcag gagtggaaaa       180
     agataaggac gatgcaagta aaaagaaagc aagcgcaatt ttactttcag cggtaggagt       240
     ttcaacgtac agtttactga aggatctcct ttcacctgac aagccggaag agaagtcgtt       300
     cgatgagcta gttaacgtcc taactactca ttttaagcca gcaccaaaag caatagcaga       360
     acgctataag ttttttaatc gccgtcagtt gcctggagag tccgtgtcgg tcttcttatc       420
     agagcttcgc aagatggcag tcacctgcaa gtttgaaaaa cttgacacat cgttacgaga       480
     ccagtttgtt gttggattgt cttcggaagc agcgcaacgg gagttattta aagaagatga       540
     taacctcaag ttacaagatg cagtcaaaat tgcgcttagt caagaagcag ccgaagccag       600
     caccaagatg attagaggag tgaatacaat gtcaattgtt agtcaatcat ccagctcgga       660
     acaaacaaat aaagtcaatt caggaaagaa gttccaaaag tggtcgaagt cctccggagg       720
     gaagtcagaa aacaacagca gcgagcagtc atgttcaaaa tgcggaggca agcattcccc       780
     aaagcagtgc ccccacaagg atgtggaatg ttataaatgt caccgaatgg gacatttcag       840
     taaattttgc cgcagtaaga gccatgcaaa agctgagggg aaaggaaacc agtcggattc       900
     cagcgtcaac aacgttcgtc acaaggaaag tccacccatt caagttgcag ttaccataaa       960
     tggaaagtta gtcatcatgg agttggacac cggagcaggt cgcagcttca tctccagaga      1020
     agtttggaag aaattaggct caccgaagct gaaaagcagt aaaattaagt ttactacgtt      1080
     cactggagaa gattttgaag ccaaaggaca acttcaatgc caaattgatt accataatca      1140
     atccgtgaat cattctatct ttgtcgtgga taatgattca agctgtcttt ttggacgtga      1200
     cctcctctac aaaatccaaa tgaattggag cgaaatcaag tcgcagtgtt ctcaagttaa      1260
     ccaaatcaat ggagttacca cgttatcagc tctactggag gaattcaaag atgtcttcga      1320
     taagccagta ggagtaatgc aaaatttcaa agccaagttg gtgttgaagg atgacgcagt      1380
     tccacgcttt ttcaaagcac gtcctgtacc gtatgctgta cgcagtcaag ttgatgagga      1440
     gctccaaagg atggaagccg ctggtgtcat cactcgtgtg gaacactccg attgggcgtc      1500
     accgttggtc gtcgtgccaa aatctaatgg taaagtcaga attactgggg attttaagaa      1560
     gacaataaat gcccagctgt gtgtaaacca atacccatta gctcgtgtgg atgatttgat      1620
     ggaaacgatc tcgggaggag ccaccttttc caaattggat ggctcagacg catttcatca      1680
     agtggaagtc gaagagtcct gtcggaagtt tttagtcata aacactcacc gtggactgtt      1740
     ccagtataat gtgctgccgc agggaatcgc ttcatctcca gcgattttcc aggaaatgat      1800
     ggacaacatg ctccgaggca tatcaatgac cggtgctttt gtggatgatg cgattacaac      1860
     aggtcgtgat gataatcagc atctaatcaa tctcaagaag atatttgtac gtatgcgagc      1920
     agccaattat cgtctgtcca gatcaaaatg tcaatttatg gagaagagaa tcaagttcct      1980
     aggatccgtt atctgtcaag acggaattcg tacagacccg gagaaagtgg aggccatcat      2040
     gtcaatgaaa gagccagaaa atgtatcaga agtcagttca tttctcgggt tggtcaactt      2100
     ttatgcaaag cacattcctc acctctccac aatctgtgaa ccattaaatg ccttaaagcg      2160
     gaaggaagca gaaggatgga agtggacagg aaaatgcaga gcagcgttca atcaagttaa      2220
     gaagagtgtc acggaaggaa gcatattgac ccattttgac cagtccattc caattggatt      2280
     ggcgtgtgat gcatcatcgg taggagccgg tgttgttttg tttcatcgct ttccggatgg      2340
     caccgaaaaa ccaatcgctt atgcttccaa aaccctcacc tcagccgagc gaaattactc      2400
     gcaaatagaa aaggaagcgt tatccatcta ttttggagta aacaggttca tgaaatacct      2460
     gtttggagtt cgtttcatcc ttgtcacgga tcacgcgcca ttgttggcaa tttttggaag      2520
     taaacgcgat gtaccgtcgt tagcagctac acgtcttcat cggtggtcgt tattcctcag      2580
     tggattttca tacgatatag aatatcgtag tactcatcag cacggtaatg cggatgcgtt      2640
     atcccgatta ccagtttcaa atacttatga agaagatgaa gacgttagtg ttcaaattaa      2700
     aagaattcaa gaggaaaacc ccatcacttc aagaaaagtg aggcatcaga cctcaaggga      2760
     taccgtccta tcaaaagtga tgcattatgt ccaatcagga tggccagaga agcaatccca      2820
     agtgccagaa gctgttcgcc agttcttcag tcaccgttac gagtacactg tggagcaggg      2880
     gatcatcatg tggggcattc gcgtcgtcgt gccgagttcc cttcaacagt cagttttgtc      2940
     gcagcttcat gacactcatc ctggaatcgt gagaatgaag agcttagccc gtcagtttgt      3000
     atggtggcct ggaatcgata atgacattga atctgtcgtg aagtcatgtc atacttgcgc      3060
     cgtaaacaga gataatccag ctgctgcccc tcttcatccg tggagttttc cagagaaaag      3120
     ttggcaaaga atccatgtgg atcttgcagg accgttttta cataatatgt ggctcatagt      3180
     tgtggacgcg ttctctaagt ggccggaagt tgtaccgctt ggaaaggata caagttcgag      3240
     aaaagttatc catagtctga gggaaatcat cgcgaggttt ggtattccag ataccattgt      3300
     ctcagataac ggtccacaat ttacttccga tgagttcgag aagttttgta ccagtaatgg      3360
     aattcgtcat acaaccagta gtgcttacca tccacgttcc aatggtgaag ctgaaagatt      3420
     cgtcagaacc ttcaagagtg gactgtcgtg tcatgcggga ggagacctga acttgtcact      3480
     gtgtgatttt cttttaacgt atcgtattac cccgcatgca actactggag tgtcacccca      3540
     agaaatgatg ctaaaacgca aaccgcgtac tttgttggat ttactacgtc ctgatgcaga      3600
     ttccaatgtt cggaaaagtc aagagaagca agttgaaaat gacaagaaaa gaagactccg      3660
     tcaattcaca gttggtcagg atgtctggat acgtaccttc tctaaaaatc aaccaggatg      3720
     gtcgttgggc aaagttgttc aagcctgcgg tccgctgtcg tataaggtgg atgtcgatgg      3780
     tcgcgtttat aaacgccacg ttgaccatat gtttgatgct gttgtaaagt ccagaagttc      3840
     cagcccaacc ccaccagaag atgatgaaga tgtctcgtta gttcaagtcc cggtttcgga      3900
     ggaggacgcc gaggaagagg aacgacaaga aaatgaaaga cgttacccgg agaggatccg      3960
     tcgagttcca aaacgttacc cggattgacc tttcaactta aggggaaagg aa              4012
//
ID   Gypsy-32_SiCu-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5109-5109 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 282 BP; 91 A; 50 C; 50 G; 91 T; 0 other;
     tgttatattg taaagtataa aaccatagag ttcgttcttg taaagcacaa agccacattg        60
     tccaggtagt atttaaattg taacaccatg cggtcagcat gaagtaaagt tccgttctgt       120
     tcattgagcc aagctcattc tgttcttgag tcgagaccag agacaagtgg tgctgtgcta       180
     tattatagct ttgtccatat ttaatcatta attaaataaa ctagtaaaac taacagtcgg       240
     tcaccagcgt gccttatttt gttatagcat aaatacataa ca                          282
//
ID   Gypsy-32_SiOr-I repbase;    DNA;    INV; 7176 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-7176
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 366-366 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1557
FT                 /product="Gypsy-32_SiOr-I_1p"
FT                 /translation="MEAKEDFHSIGDTDDISETGFMPTTQNLVPPGPSTDS
FT                 DSRTGWIYLLKKSELAAQLTRFGLCNTGTLEEMRRRIVKFIRDGHSSPQPR
FT                 TQPFDFSGNGATIPTVSTIATLTTTTVTTTVSTTRPTPTAQNAMSAATMFD
FT                 YNLPLDTGITPAPVMSAPMINNYPLLPNTGISHSYTSSPLNIRQWGVTYNG
FT                 RSDPATFLERLEEICTAQNIQPDRLLPQLPEVLQGEAALWYRNNRGNYRNW
FT                 EDFTREFRIFYYPVNYEVDLEAKISRRVQRTNESVIAYITDLQTLIRRHGN
FT                 ISPSQELQWLYRNLLPEYRQYVRRGDFHDISTFSQVTKEFELLRNELQQTS
FT                 HRRVAFDNVPTDTVETRPNRESRRAVRTEDYPNTSNHTNVIQNQRTNQNGS
FT                 RHMSTPPRRPLNAATSTSPATSNVICWRCGQTGHYRTDCTQKPQIFCSRCK
FT                 TKGVLSRDCPCGRSGN"
FT   CDS           1509..4394
FT                 /product="Gypsy-32_SiOr-I_2p"
FT                 /translation="NKRSIVKRLSMWPLGKLAQRCTQTSVQRGSLTNRSSE
FT                 TTPILRYDNRPTLKIRYRNIEYTALLDTGAANSFIGKNLTQMCRNSKATVV
FT                 KPTLRGATLANGTNESISEAYKIKFQIGNQVLNEVFHTLESLVPEVVIGMD
FT                 ILRKHRFNIDLQTPQVRLNGQVVTENDFTTLCTVSDNLDIPDLSRAEEVKL
FT                 QSFLEQELPGFENIRGTTPLVEHEIRLITKDPIKQRYRPQNPKMQAIIDAE
FT                 VDKMLEDGVIEPSDSPWSSPIVMVKKKDNSYRFCVDFQKINSVTRKDAYPL
FT                 PYINAILDKLRKAKYISSIDLKQGYWQVPLTLESRAITAFTIPTRGLFHFK
FT                 VMPFGLHSAPATFQRLMDQIIGPELDPYCFAYLDDIIVLGETFDEHLSHLE
FT                 EVFRRLKKANLKLNPEKCQFGRKSLKYLGHWVTPEGIRTDPDKVASILELA
FT                 TPTNVRSLRRFLGIASWYRRFVPGFSQIAKPLNDLLKKNSKWQWQEDQQGA
FT                 FDKLKECLTRAPVLTCPDFQKPFVLQTDASDNGLGAALIQHLHDGDHVIAY
FT                 ASRSLTSSEKKYTVTEKECLAIVWGIEKMRPYLEGYRFVVITDHQSLRWLH
FT                 SLKNPSGRLARWSIYLQQYDFEIRYRKGVLNKIADALSRNPTDPPPSEEEL
FT                 LTISETDICPWYEKKRSEVQSHPDLFPDFCVRDGKLFRHFLDMTDAKEAEM
FT                 QDPWKLCVPKSARPRVLQENHDQPTAGHLGIAKTTSRIAARYYWPGMFRDI
FT                 AQYVRRCRSCQEYKTSQQQTPGRMQPTTIRGPWETVSSDLVGPLPRSTKGN
FT                 CYVLVFQDRFTKWIVCKAIRTATAKAVSQALYDEILMRFGRPATVITDNGT
FT                 QYTGQPFRQLLKEFGINHRFTPPYTPQANPVERANKTIKTMIAQFCEGDHK
FT                 KWDTHLSELIFAFNTSRNDSTGFTPAFLNYGRELEAPKTHLRDEQQFIPSE
FT                 DPETDHC"
XX
SQ   Sequence 7176 BP; 2157 A; 1693 C; 1541 G; 1785 T; 0 other;
     aaaatttggc gcctcgagcg gggacatttc aaaagaagga gaaaccgggt aaagccagga        60
     aaagctagga aagctaccgg aacagtgtga gaaggggtga caagaaaaca atacaacagt       120
     caagcgtgag ttttctaaac acagtcaaga gtaacagacc gggaaaaacc aaagatggag       180
     gccaaagaag attttcactc gatcggggac accgatgaca ttagtgaaac cggatttatg       240
     cctacaacac agaacctagt accaccaggt ccaagcacgg attctgactc tcgcacaggg       300
     tggatttatt tgctaaagaa atccgaattg gctgcacaat tgacacgctt tggtttgtgt       360
     aatacaggga cacttgaaga aatgcggagg aggattgtga agtttattcg agatggtcat       420
     tccagtccac aacctaggac gcaacctttt gatttttctg gaaatggtgc taccataccg       480
     accgtcagta ctatcgctac ccttacaacc actactgtca ctacaacagt gtcaacaacc       540
     cgacctacac cgaccgctca aaatgctatg tctgctgcta cgatgtttga ctataatttg       600
     cctctggata cgggtatcac acctgcacct gtgatgtccg ctcctatgat taataactat       660
     cccttgctac ctaatactgg aatatcgcat agttatactt ccagtccatt aaatattcgt       720
     caatggggag tgacctataa tgggcgttcc gacccggcaa cttttctgga gagactcgaa       780
     gaaatttgta cggcacaaaa cattcagcca gatcggttat tgccacagct acccgaagtt       840
     ctacaaggag aagctgcact ctggtaccgc aataaccgag gcaattacag gaactgggaa       900
     gactttacaa gagaatttag gattttctac tatcctgtta attatgaagt cgatttggag       960
     gccaaaataa gtcgccgagt acagcgtaca aatgaatccg tcatagcata tatcacggac      1020
     cttcaaacgt tgatccgccg tcatggcaac atatctccca gtcaagaatt gcaatggtta      1080
     tatcgaaact tactgccgga atatcgtcaa tatgtccgaa gaggagattt ccatgacatt      1140
     tcgacctttt cacaagtcac caaggagttt gaactactga gaaacgaact tcaacagacg      1200
     tctcatagac gagtagcgtt cgataacgta ccgaccgata ccgtcgaaac gaggccaaat      1260
     cgtgaatccc ggcgagccgt taggactgaa gattatccga ataccagtaa ccatacaaat      1320
     gttattcaga accaacgaac aaatcagaat ggatcaagac acatgtctac ccctccccgt      1380
     agacccctca acgctgcaac atcaacatcc cctgccactt ctaacgtaat ctgttggaga      1440
     tgtggtcaga cagggcatta tcgtactgat tgtacgcaga agccgcaaat attttgctcc      1500
     cgatgtaaaa caaaaggagt attgtcaaga gattgtccat gtggccgctc gggaaactag      1560
     ctcagcgctg cacgcaaacc tcggtgcagc gcggatcctt gacgaatcga agcagcgaaa      1620
     ccacgcccat tttacgatac gacaatcgcc cgaccctcaa gatccggtac cggaatatcg      1680
     aatatacagc cctcctggat actggggcgg ccaattcgtt tattggaaag aatttgactc      1740
     aaatgtgccg taattctaaa gcaactgtag tcaagccaac gctaagggga gcaacccttg      1800
     ccaacggtac caacgaatcc atttccgagg cctataaaat taaattccag attggaaatc      1860
     aggttttgaa tgaagtattc cacactctgg agagtctggt gcccgaagtc gtgattggaa      1920
     tggatattct gcgaaagcac cgatttaata tagatttaca gacacctcaa gtaagattga      1980
     acggacaagt agtaacggag aacgacttca cgacactttg tactgtctcg gataacttgg      2040
     atattccaga cctttcaaga gccgaagaag taaaactcca gtctttcctg gaacaggagc      2100
     ttcctggttt tgagaatatt cgtggtacta cgccactggt ggaacatgaa atccgactaa      2160
     taacgaaaga ccctattaaa cagaggtacc gacctcaaaa cccgaagatg caggccatta      2220
     ttgacgctga agtggacaaa atgctcgaag acggagttat tgaaccctcc gatagtccat      2280
     ggagctcccc gattgtaatg gtaaagaaga aagataacag ttatcgtttc tgtgtggatt      2340
     ttcagaagat taactctgtg acgaggaaag atgcttatcc attgccgtat ataaatgcga      2400
     tcctggacaa actccgcaag gcaaagtaca tctccagtat tgatctaaaa caaggatatt      2460
     ggcaagtacc gctaacttta gaaagcaggg cgataacggc atttaccata cctaccagag      2520
     ggttgtttca ttttaaagtg atgccgtttg gtctgcactc agcacctgcc actttccagc      2580
     gactaatgga tcaaattatt ggacctgagc tggatcctta ctgttttgcc tacttggacg      2640
     acattattgt actaggagag acctttgatg aacatttatc tcacctggaa gaagtttttc      2700
     gacgtttgaa gaaagcaaac ctaaaattaa atccagaaaa atgtcagttt ggtcgcaagt      2760
     ctctaaagta tctaggacac tgggtcacac cagaaggtat tcgaaccgat cccgataaag      2820
     tagcctctat tttggagtta gctacaccga caaatgtcag aagtcttcga cgatttctag      2880
     gtatagcttc ttggtaccga agatttgttc ctggattctc acaaattgcg aaacctctca      2940
     atgacttgtt gaaaaagaat agtaaatggc aatggcaaga agatcaacag ggagctttcg      3000
     acaagctcaa ggaatgcttg acaagggcgc cagttctgac ttgtccagat ttccagaaac      3060
     cattcgtact tcaaactgat gccagcgata atggtttggg agcggccttg attcagcatt      3120
     tacatgatgg tgatcatgtc attgcctatg ctagccgtag tcttacctca tccgaaaaga      3180
     aatatacagt cacggagaag gaatgtctag ccatagtatg gggtatcgaa aagatgagac      3240
     cctatttgga ggggtatcgc ttcgtggtaa tcactgatca ccagtcgctc aggtggctac      3300
     actctctgaa gaatccaagt ggtagactgg cccgatggag tatttatcta cagcagtatg      3360
     attttgaaat tcgatacagg aaaggggtgc tcaataagat agcggatgcg ctgtcccgaa      3420
     accctaccga tccaccgcca tccgaagaag aattgctgac tatttctgag actgatattt      3480
     gtccatggta tgagaagaaa agatccgaag tacagagtca cccagatcta tttcccgact      3540
     tctgtgtccg agacggaaaa cttttccgac acttcttaga tatgacagat gccaaagagg      3600
     ctgaaatgca agacccatgg aaactgtgtg ttccaaaatc agcgcggccc cgagttctac      3660
     aagaaaatca cgatcaaccc accgctggac acttaggtat tgccaagact acatcccgga      3720
     tagctgcccg ttattactgg ccaggaatgt ttcgcgacat cgcccaatat gttcgaagat      3780
     gtcggtcttg tcaagagtat aaaacatctc aacaacagac gcctggaaga atgcaaccaa      3840
     cgactatccg aggcccgtgg gaaactgtga gttcagattt agtggggcca ttgccgaggt      3900
     ctacgaaagg caactgttac gttctagttt tccaagacag atttaccaaa tggattgtct      3960
     gtaaggctat cagaaccgct actgccaagg cagtgagcca agccttatac gacgaaattc      4020
     tgatgcgttt tgggagaccg gccacggtca tcaccgacaa tggcacgcag tatactggtc      4080
     aaccgttccg gcaacttctg aaagaatttg gaataaatca tcgatttaca ccaccatata      4140
     cacctcaagc taatcccgta gaacgagcaa ataagacgat caaaacgatg attgctcagt      4200
     tttgcgaggg cgatcacaag aaatgggata cacatctctc cgaactgatc tttgccttca      4260
     acacgtctcg taacgactcc actggtttca cccctgcgtt cctgaactat ggtagagagc      4320
     tagaagcacc aaaaacacac ctacgcgacg aacaacagtt catcccgtcc gaagatcctg      4380
     agaccgacca ctgctgatgt taaacacaac gaaaatcgtt taaatcgcct acaagaaaca      4440
     ttcgagttgg ttcggataca tttgtcacgc gctttcgcgt cacagagtcg ctactataat      4500
     ctgcgtagaa gagaatggca atgtaaacca ggagatcgag tgatgaagaa agagcatccc      4560
     ttgtcttctg cagtgaaagg gtttgcagct aaactcgcac caaagtattc tggcccgtat      4620
     accatcaccc gaaaactttc gcccgtggtc tatgatctgg ttgatcgaaa taatcgcaaa      4680
     ttacagagaa ttcatattaa agacctcaaa cccgcttact aaagaaatca cacacaaaca      4740
     cacatgtatt tttcttttag acatgtcccg acgatttttg ggagaaccgc cgagaggagc      4800
     tccacccata ggacatttat atgctatgag gagcgaagtt gaacgggtgc ggcgggaaag      4860
     aaatctccgg acacagagta tacgggagat ggtgagccag tttaacaaat cgccacttcc      4920
     cttgccatta gtttcaatcc ctccgaccga cgttctcccg aaaatcataa tattatccaa      4980
     catccaagtc cgacccccga acctacccac tgcccaacct ccaacacagg ccacggactc      5040
     gtcaacaccc tcttcgcccg tcccttccac ttccaaacaa tcacagatca acttagctga      5100
     ccaaatagag gccacgcccg gaacctggaa ccttgaactc agagaggcga tccgcgcact      5160
     ccgaccgccc actgcttctc ccgttcgacg ctatcgaatg tggctgacaa ccagcaaagg      5220
     gcgccgcatt cgagtgacca tcccagcgga ctatgagaag taggagtata atagacaaac      5280
     ctagaaattt tggtgataga gagttgggtc ggagagtcca agtttgagtt tctttctatt      5340
     agaaaagctt gagttggctt ttgttttttt ttgttgtttt gttatttaac aatttttttt      5400
     tctgttccta ggcctagatt ccctctaaac cctatttatt gactgtatac gtcattgaaa      5460
     ttcgaatcaa ctaataaatt tgaattattc cagatcacct cctcaatagt cgtattgaaa      5520
     aaaaaaaaaa aaaaacctac cgtccagtca ccaccgtcca gtaatccaga cataatcgcc      5580
     ccaacgttaa gaacagagga acgggatgtc gtcgggcgaa tcctttgttt cagctctgga      5640
     agaggacgtg atggagcagt tgagactcga gcctacggag cgccgccgtc ccacgtcgtc      5700
     cgtccgagga cggaattatg tcctaaattt tcccgtaacc acatcccctg tggtgcgctc      5760
     ttccctcggc atgggacacc aagtacgaca acctccaaga tctccgttag ttcaacggac      5820
     cgccatgtcc aaaccaagtt caacaacagg tacctccacc gcctctcacg tacgcccacc      5880
     aggtactaca gtacgacaac ctagatctcc agtagtccga ccgtccgcca tgtccaaaca      5940
     aagtcaacca gctacagtta cctccacgac gtctctcgtc cgcccacaag gtaatacagt      6000
     acgaccccta gagtcacccg atgccccaca acagtgacgt acactgcccc tgtcgtacgc      6060
     tcgtccgttt tcacggtacg acactccgga gaaagacgag gtctatcagc accggtgacc      6120
     accatggccc ctgtcgtgca cccctccacc agcacgggac gctactccca gactagaact      6180
     tcgtccgtcc gaccgaccgc cacgtataca cgcgctccag ctccggtata ctaccgagat      6240
     ctggaggcca ttcgacctat ggaaaatcct tttggaccaa tactatacga aacacacgac      6300
     ccaaataggg ttcccgttga attgaatgtg tgctggcgct gtggaacccc gggtcatacc      6360
     agagaacgtt gtgagaaagg ggccctattg ttttgctccc gatgtggcat catcggtatt      6420
     aaatcaagag attgtccttg tggacaattc cgggcggtgc gcccaaccaa tccactacca      6480
     aacaccgggg gccaacaaaa aaaaagagac cacgacagcg aaccaacatt ccgcgccgga      6540
     ggggcccgga ctcaacatca gagacgcgcg ggaggtgtcc gcattgccga cgttaagggc      6600
     tggagacgtc cgccagagaa tctttcttta ttttttataa atatacttag gataggaaaa      6660
     tttaagtata tcgtatggaa aatgttattt gtttttgctt ttgttaattt agcatagcct      6720
     aagtggtagt agaatttaat tgtttttctt tgaaataata aattttggtt taataagtct      6780
     ttttttgaaa atgctttatt tactggaggt ttaagattag taaaatatta gatataagtg      6840
     aagactaata aaattttatt ttggtacgtg ttttatttcc ttaataacgg atgacttgag      6900
     taaactaaaa gggttaagtt tttttttaag ataagttaga cttaagtaaa gactaataaa      6960
     attttgtttt ggtacgtgtt ttatttcctt aataacggat gatttgagta aactaaaggg      7020
     ttatattatt agataagtta gacttaagta aagactaata aaattttgtt tttgaggttg      7080
     ttttatttga ctcagcatag ctgaaaaaaa aaaaaaaaaa aaaaatatat atatatgttc      7140
     ctatattttt tttttttatc cgaagcaagg ggggta                                7176
//
ID   Gypsy-32_SiOr-LTR repbase;    DNA;    INV; 1377 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1377
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 400-400 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1377 BP; 343 A; 318 C; 316 G; 400 T; 0 other;
     tgtaacgatg ttacttaatt tttgtgataa ttaatttgta gtgattaaat taattagctt        60
     gtaattatca aattatttat aaaatgatta ttttgttaaa agcaagcagt agagtcttgg       120
     ttcgtatcga tcgatagtgg cggggatacg gcgcgcgccg ttgtccccac tgtgtgctgc       180
     tttccccact ccggtagacg agagcagtac cgttagaaaa tcaaaagtcg tcagttgctt       240
     ggtacctggg ttggcgatta gacgacagct gaactctgct cctccgaagg taaaaactcg       300
     atagaaagcc tcgctttcta gaaagtgctc acccgactac tctccgcaat atcctgtcct       360
     gcgcagtgtc ttttctagtg tagtgctacg ccacgttttt catcaagtga agcttgtcgt       420
     ttgaaaactt tcctttcagt tttcctcact caatcacgtg aacgtgtgtc ttagccaacg       480
     ccttcggaaa agcggtgagc ggctttacat taaattgtga aaggccgttc tctgtctttc       540
     aaaaggtggc tgactaggca gagcagtagg tggcgtcctt tggtcagtac tttcacaagt       600
     actgtcggga ggcgtttcct gtgcctaatc catccgtgat tgaagggaaa gcgtgaaaaa       660
     cctacaattt tgaccgtggg gtgctgtttt cacgtacggt tagattgtgg gctagtgaac       720
     aaacgaaaga caagtttcgt ctccgggtta agatagggtt taactagtaa ctttttgatt       780
     tcgcgatctt gccacgcctg cgctacccga cagacgtcag gaggccgcct gccgtcttcg       840
     tcccggtgcg catgcggtgc ccgttttctt ttagaaagta acaaggcact gcgtagctga       900
     ctgaagcgct gggttaggac cagacgactt tcgaaagtca tcctaacttt cgaaagttaa       960
     cacatgcgca gtacattccc cgaccgcaaa tactagggtg agctatccat ccatctacgt      1020
     ctgcatttca gggccgcgca tgcgcccttg gttagaaaat agaaagtctc gcgcttgcgt      1080
     agaaccttac tccgcgccat tttgcgcgaa acccctgagc caagacttta cggctgcttc      1140
     tcaacgaatt tgaggttaat aaagattgtt tatattattt taatttaaac tgattgtttt      1200
     attttgactt tacctgcacc ccttcatacc tggagtctcc actgtttaaa ggctacccgt      1260
     actggcaaac gtgggcctct gccactataa atcacagagg tggcgcccga gagatctaga      1320
     tttaccacta ggcgtcaata aggctatttt tcacagaacc aaagaaatag ccttaca         1377
//
ID   Gypsy-32_SpEx-I repbase;    DNA;    INV; 4690 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4690
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4101-4101 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..4622
FT                 /product="Gypsy-32_SpEx-I_1p"
FT                 /translation="MPPRKVRTDQKPGDVDAQSSSDEEPRRSSPVLMSGDQ
FT                 LTSFLTAFANSQAEANRQLVESLMASHAAGGFTATPSPTPSSTSKAGNMSK
FT                 CTARFDGQNRDPEIVESFIDSVEMYKECALVNDDLALRGLPMLLHGEAAVW
FT                 WRGIRTEVSSWSEAVKRLRSMYGTPCPAHKLYRKIFANEQSEELADSFIVR
FT                 IRGMIAKFPYVLPEEAKIDIIYGLLHKRIRKRLPRDTVNSIESLIDKARDI
FT                 EESIMEDSSASTSSQSAHSAPTETTTPTARSAPAGPRAPRAAATCNNLAGN
FT                 GVTTPSLSGAGAQQSISRSQVRSVRDTCNEVLSADKNNTASGSKLFCVYCK
FT                 SRGHTRDLCPKKDSKVSSSNNKSSLICYGCGEKGFVRANCPTCKSNVSSLS
FT                 CNVISSKEPQPQHNVFYSLTTTQDCFNVSSTCTNNIITQDRPILNIEILGY
FT                 SGSALIDTAARRSIAGSTLYRLLLRLGVEFKSQTMSVRLADGSIRTNIVLL
FT                 TCVNVSCMSLCIPIEFVVFPDASNNETLLGIDFITKSKLVLNFSSMTWYTA
FT                 DRPQVIHPLLTESSRDVVVECASLNLLREDEGTLLTVEERAGLENLLGEYS
FT                 DIFNKNGEPTPFAEHHIDTGDHPPIAVPPYRVTPAKKELIRIELDKMLEDG
FT                 IIEECESAWSAPIVLVPKSNGGYRFCIDYRRLNAVTKTDAYPMPRIDELLQ
FT                 STKRGCVMSSCDLRSGYWQCKVKDQDKTAFVTPFGTYRFLRMPFGLKNAPA
FT                 TFQRLIDRFRSGSSLKDVTILTYLDDILVISESYTRHLLDLRAVFDRLRLF
FT                 KLRANRDKCVFAREKVKYLGHVISPEGISPDEEKVLAVVGMKEPTCLQQLR
FT                 TFLQTCSWFRKFIPDFAKVAEPLTRLTKKSQAWVWSSEQGKSFETLKKLLT
FT                 TAPILVQADYTKPFVLRTDASNYALGAALLQGESPNQEHPIEYASRLLTPA
FT                 EQNYSTTEREALAVVWAVERFRGYIDGHQVNVMTDHQPLKWLFTLKSPSGR
FT                 LVRWALKLQSFDLRIEYAPGKVNVLADTLSRPVTADGPASEPAICPVVVDV
FT                 PRWNASSTRDAQLADPEVAKIIHDLEGNDELNINRWSERGYLLTQGVLYRY
FT                 APDTDSEEPQLVVPESLRNEVMFECHDSPTAAHGGVDRTIHRISQRFYFPG
FT                 MRRFVTEYLKTCIECQRYKPSTLKPAGLLQTPVPSQRFETIATDLFGPLPK
FT                 GPNGERWILIVEDTTSKWVEVFALTEATAETCAKTLVNEVFLRFGLPRRMI
FT                 SDNGVQFVADVMQKAMFVLGVKQSLVPLYHPEANPVERKNRDLKAQLAILV
FT                 EGRHQTWPEVLPFVRFAFNSSVTKSTDHTPAYLTFGRELRSPLTAQADLRA
FT                 VVESENFVPQITPYLLKLADTVSTAKETLERQQDVRKSYADKNRSSTHEYL
FT                 EGDLVLMRTHTLSNAAKGVTSKFNPKRDGPYVVSKKVSPTTYLLAHDKTGE
FT                 IFGKYHVSDLRPYHAREGECPEPIIPKRNRGRPRKVT"
XX
SQ   Sequence 4690 BP; 1203 A; 1065 C; 1165 G; 1257 T; 0 other;
     agtggcgctc caactcgtgg ccgcgaacca gtttaaacca gtttgtgctt gccggcggtt        60
     aacgtttttc ggtggtcctg tgttcctgtt ctctgatacc tacgtaaaga gtgaagatgc       120
     ctccacgtaa agtacgaacg gaccaaaaac ccggtgacgt tgacgcgcag tccagctcag       180
     atgaagaacc cagaagatct tcgccagtgc tcatgtctgg tgaccagctg acttcatttc       240
     ttaccgcctt cgcgaattct caggcggaag caaatcggca gctcgtcgaa tccctcatgg       300
     catcgcacgc ggcaggtggt tttaccgcga cgccctcacc gacaccgtcg tcgactagca       360
     aagcaggcaa catgtccaag tgtacggcac gttttgatgg tcaaaaccga gatcctgaaa       420
     ttgtggaatc cttcatcgac tccgtcgaga tgtacaaaga gtgtgcatta gtcaacgatg       480
     accttgcgct tcgtggtctc ccgatgctgc tccacggcga ggctgcagta tggtggagag       540
     ggatccggac ggaggtgtcc tcgtggtccg aagccgtcaa acgactacgt agtatgtatg       600
     gtactccgtg tcctgctcat aagctgtatc gaaagatatt cgctaacgaa caaagtgaag       660
     aactcgcgga ctccttcatt gtacgtatac gaggtatgat tgctaagttt ccttacgtat       720
     tacccgaaga agctaagata gacataatat acggattatt acataaacgt atccgaaagc       780
     gattaccccg ggacacggtt aacagtattg agtcgttaat cgacaaagcc cgggatatag       840
     aagaatccat catggaagat tccagtgcaa gtacttcctc gcagtcagcg cactcggcgc       900
     caacggagac gacgacgcca accgcgcgga gcgcgcctgc cggcccgcgg gcgcctcgcg       960
     ccgctgctac gtgcaacaat ttggcgggaa acggtgtgac gaccccatcg ctcagtggtg      1020
     ccggagcgca gcagtcgatc tcgcgttcgc aggttcgatc cgtacgtgat acgtgtaacg      1080
     aagtgctaag tgccgataaa aataataccg cgagtggatc aaagttattt tgtgtgtatt      1140
     gtaaaagtcg aggtcatacg cgtgatttgt gtccaaagaa agactctaaa gtatcgtcta      1200
     gtaataataa gtctagcctt atttgttatg gttgtggtga aaaagggttt gtacgagcta      1260
     attgtcctac ttgtaaaagt aatgtatcga gtttgagttg taatgttatt agttcaaagg      1320
     aaccacaacc tcaacataat gtattttatt cacttaccac cacacaagac tgttttaatg      1380
     taagtagtac ttgtacaaat aatatcatta cgcaggaccg acctatatta aatattgaga      1440
     tattagggta tagtggttca gcgcttatag atactgccgc ccggcgtagt atcgcgggtt      1500
     caacgctgta tagacttctt ttacgtttag gtgtcgaatt taaatcgcaa actatgtcgg      1560
     ttagacttgc tgatggtagt attcgtacga atattgtatt gttaacatgt gtaaatgtaa      1620
     gttgtatgtc tttgtgtatt cctattgagt ttgttgtttt tcccgatgcc tcaaataacg      1680
     aaacgctatt agggatagat tttattacaa agtctaagtt ggtgttgaat ttttcgtcta      1740
     tgacatggta tacagctgat cggcctcagg tcattcaccc cctattgacg gagagttctc      1800
     gcgacgtggt ggtggagtgt gcttctctca acctactgag ggaagatgaa ggcactctgt      1860
     tgactgtgga ggagcgtgct ggtttggaga atttacttgg tgagtattcc gatattttta      1920
     ataaaaacgg ggaaccgacg ccatttgccg aacatcatat agatactggt gatcatcctc      1980
     ctattgccgt gccgccgtac cgtgttacgc cagcgaagaa ggagttaatt cgcatcgaac      2040
     tagataagat gttggaagat ggaattattg aggagtgcga gtctgcatgg tctgcaccaa      2100
     ttgttttggt acctaagtcc aatggtgggt ataggttttg tattgattat agacggctaa      2160
     acgccgttac gaaaacagat gcatatccta tgccgcgcat tgacgagttg ctccagtcta      2220
     ctaagagggg ttgcgtgatg agttcctgtg atcttcggag tggctactgg caatgcaagg      2280
     taaaggatca ggataaaacc gcgtttgtca cgccgtttgg tacgtatcgg ttcttacgaa      2340
     tgccttttgg actaaagaat gcgccggcta cgttccagag gcttattgat cgcttccgtt      2400
     caggatcatc actcaaggat gtcaccatac tgacgtatct tgatgatatc cttgtgatat      2460
     ctgaatcata tactcgtcat ttgctagatc ttcgtgcggt atttgaccgt ctccgcttat      2520
     ttaagctccg tgcgaaccgg gacaaatgtg tcttcgccag agagaaggtc aagtacctcg      2580
     gtcacgtgat ctcacctgaa ggtatatccc cggatgagga gaaggtactt gctgtagtag      2640
     gtatgaaaga gcctacctgc cttcaacagc tgcgtacctt cctccaaacg tgttcatggt      2700
     ttcgcaaatt tataccagac tttgcgaaag tggccgaacc acttactcgc ttaactaaga      2760
     agtctcaggc gtgggtatgg agttcggagc aaggtaagtc ttttgaaact cttaagaaac      2820
     tcctgaccac ggcccccatt cttgtacaag cggactatac gaaaccattt gtattgcgga      2880
     ctgacgccag taattacgca ttaggcgcag ccttactcca gggggagtca ccgaatcaag      2940
     aacatccaat tgaatatgcc agccgtctgc tcactccagc cgagcagaat tattctacca      3000
     cggagaggga ggctctcgca gtggtgtggg cagtggaacg tttccgaggt tacatcgatg      3060
     gtcaccaggt caacgtgatg acagatcacc aacccttaaa atggcttttt accctcaagt      3120
     ctccaagtgg cagattagtt cgttgggcct taaagttaca atcattcgac ttgcgtatcg      3180
     agtatgcgcc aggtaaggtt aacgtattgg ccgatacact cagccgtccc gtaacagcag      3240
     atggtcctgc atctgaaccg gctatctgtc ctgttgttgt tgatgtacct cgctggaatg      3300
     catcttccac ccgtgatgcg cagttagctg atccggaagt tgcgaagatc atccatgacc      3360
     tcgaaggtaa tgatgaactt aatataaatc gttggtctga gagaggctat ctcctgactc      3420
     aaggtgtctt gtatcggtat gcccctgata ctgattccga ggaacctcaa ctcgtcgtac      3480
     cggagagcct gcggaatgaa gtcatgttcg aatgtcatga ctcgcctact gccgctcatg      3540
     gtggtgttga tagaacaata catcgtattt cgcaacggtt ctattttcct ggtatgaggc      3600
     gttttgtaac cgagtacttg aagacctgca tcgagtgtca acgctacaag ccgtcgacac      3660
     tcaaaccagc cggtttgctt caaactcctg tcccgtctca aaggtttgaa actatcgcaa      3720
     ctgatctttt tggaccgttg cccaaaggac ctaatggtga gagatggatc ctcatagtgg      3780
     aggacaccac tagtaagtgg gtggaagtct tcgctctcac cgaagctaca gcggagacat      3840
     gtgctaaaac tttagtcaat gaggtatttc tgagatttgg tcttcctaga cggatgattt      3900
     ctgataacgg agtgcagttc gttgcagacg ttatgcagaa ggcgatgttt gttctaggtg      3960
     taaaacaaag tctggtgccc ttatatcatc cagaggcgaa tcctgttgag cggaagaata      4020
     gagatcttaa ggctcagctc gctattttag tggaaggtcg ccatcaaact tggccagagg      4080
     tattaccgtt tgtacggttt gcttttaata gctcagtaac taagtctaca gatcataccc      4140
     cagcttattt gacgttcggc cgtgagttac ggtcaccctt aactgctcag gcagacctaa      4200
     gagcagtagt agaatcggag aactttgttc cccaaattac gccttatctg ctgaaactcg      4260
     cagataccgt ctcgacagcc aaagagactc tggaacggca gcaagatgtc cgtaagtcgt      4320
     atgccgataa gaatcggtca tcaacccatg agtacctgga aggagacttg gtcttaatgc      4380
     ggacccatac gctcagtaac gcagcaaaag gtgttacctc aaaattcaat ccgaaacggg      4440
     atggaccgta cgtcgtctct aaaaaggtga gtcctacaac atacctccta gctcatgata      4500
     agacaggaga aatcttcggt aagtaccacg tgtcagattt gcgtccttac catgctaggg      4560
     agggtgaatg tcctgagccg attattccta aacgcaatag gggtcgccct cggaaggtga      4620
     cctaaccgca gcgcttttct tattttgttt gaccactcgg gagacccttc cctggtcaaa      4680
     agggggagag                                                             4690
//
ID   Gypsy-32_SpEx-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4161-4161 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 300 BP; 64 A; 84 C; 68 G; 84 T; 0 other;
     tgtaacgcgc cgtccgaacc tctgtatttg tggcaacttc acgcatgcgc gggagatcta        60
     ccttgtcccg ctaacgcact gcgcagctgc gcgcgccgcg tcgtacgcgc gagcttcagt       120
     ccgcccccgc taacggccgc gacgcgcata aatgtatcgc gtccgcgacc ttacgtgatt       180
     gtttctctaa ctaattagtt ttgtgacatt gtgtaactga ttgattgatg attagactct       240
     ctttatctaa agacatggtt ttctttcgtt cgtgacaccc caatagaaac aaatgtcata       300
//
ID   Gypsy-32_TrNi-I repbase;    DNA;    INV; 5320 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5320
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 235-235 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1316..5212
FT                 /product="Gypsy-32_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSLPPVEPLQCDGDPMSLGLRWEKWRRALEIYLLAS
FT                 EIKNPVIKRATLLHMGGTALQEIYYNTPGAHIEGSDVTDSTDVYRVAIDKL
FT                 NEYFLPKQSKVYERHIFRLLKQENDEKFEKFLVRLRQQSKKCKFANGEDDN
FT                 IIDQVVEKCNSMELKKKILTLGDDVTLDKVIAEANAIESVQRQLSDYGNGS
FT                 APRPIANINRIDAKRQFDQNKDCSRCGSEKHNGDSLSCPAKDKKCSKCGYI
FT                 GHFMAKCRTRASKRRSTHANGGKMPIKKIKLDNSVKKSENSNDDQKKASSN
FT                 VNYIFYFDGDGKIKCDIGGVDNIELLIDSGSNHNILTDKTWTFLKSCNIQA
FT                 TEQNANPEKIFMAYGSSVPLTVLGSFQAVVKIGAEERNSTFYVIQGGTRDL
FT                 LGKETATDLKVLKLGLDINAVSESQNQGPFPKFKNITLDIAIDKTVTPTSQ
FT                 PCRRIPVPLEEKVNKRIDELIELDIIEPVNKPSRWVSPIVPVLKSDGSVRL
FT                 CVDMRVANKAILREHYPLPTMDKLLPKFRKARIFSKLDIRDAFHQIEISEE
FT                 SRHITTFITTRGLFRYKRLMFGISCAPELFQKTLERILLPCEGTLNFIDDI
FT                 IVYGRDEREHQTRLDRVLEVLKKYNVTLNKKKCVFNAKVVQFLGHQLSSEG
FT                 VKPLDTYIKSVDTFREPKTIEEIQSFLGLLNYVNKWIPNFSTTTEPIRKLL
FT                 KLKIGLKSDLSKYWEQEQKTAFDRLKTQLQNIQSLGYYDPEDQTQVLADAS
FT                 PVGLGAVLVQIDDKGPRVIAFGNRSLSEVEKRYCQTEKEALALVWAVEHFH
FT                 IYLYGRKTFDLITDHKPLEVIFGLRSRPCARIERWVLRLQSYNYRVVYRPG
FT                 KNNIADPFSRLCQSTHNTFDREGESHINQLVQYARPCAIPMQTLIECSEAD
FT                 EEIQLVKEALNTNMWEPRIIQYRIFQTELWTHDGILLRNDKIVIPTSLRKQ
FT                 VLDAAHEGHPGIVAIKGRLRTKVWWPKVDKDAEAKVKSCRGCTLVTAGNPP
FT                 LPLKRRQLPDQPWQDVAIDFLGPLPSGHYLLVIVDYYSRYKEIKVMKTITT
FT                 ADTTIMLKEIFSRLGIPITLTADNGRQFTSQDFKNFCQEMGIKLLSTTPYT
FT                 PQENGEVERQNRDILKRLQISQTLKSDWQSDLLDYLMMCNSTPHSSTGKTP
FT                 GELFFSRKFRDKLPSIVREKSGVDGEVRDKDTIMKEKGKAYEDRRRKATEY
FT                 GIEVGEKVYVKNVSKGNKLTAPFNPTPHTVLSSSGNEYNVRNDDTGHEYRR
FT                 NIVHLKKVQGEWQIYDPEKHAQDVPLDSNEALDSDKDE"
XX
SQ   Sequence 5320 BP; 1898 A; 945 C; 1061 G; 1415 T; 1 other;
     cgtggcgacg agatttcatg taagtggaaa tcatataaat tatgaaaata cagtgtcaaa        60
     aggaaagggg agggaggtga gagaatgcga acccatgcga tgaatgcgat tcaaccttta       120
     catacgtaga atgtgaggct aaatgaagca gatgagtgca ttatagtaaa ctaatgagtc       180
     ataaaccgag ctatgttttt attgtccgcc aaaaaagtaa acaatttaac ttctcaaatg       240
     cattgtgctg agtaaacggc tagagttgtg ttgtgaggaa cgaaaatatt atctatttaa       300
     gtatcatgat aagtttcctt tagtcaaata ctgttcgtta gatggcggta gattaaagaa       360
     gcatgccagt cgacaaatta cgtacctacc cacctatatt acattacgat aaaaaataac       420
     ccattatcga gttaaacgaa ctttaaccct cccgaatact tagaccttat attttgtgtt       480
     attatttatc cgaatgaaat taacaataaa cttaaatttt aaaataacca tgtaggtaat       540
     gcaacaaaat tgctaaaaaa ataataataa taataatcga tgtataatac ccaatcaggg       600
     taaaattgtt taacattaaa ttatttgaca agtaggttta atgtttcatg atatttaata       660
     gataacgagt taatttagta aattctaaca agatcacacg ttacacaact ttagtatgta       720
     atttgatatt tataaattaa aatagcgtcg ggaagagtgt accaagggta cagaaaatag       780
     aacaattttg ccaaggagca tagatagaca agacagtgcc aaggagcaca aaataaatgt       840
     tagcctacat tcacaatggt gtacaacctt gccaaggagc aaacaattaa gtggattagg       900
     atcagtaaat gatttcataa acattgttta tgaatactaa aataacagaa tatttaaatt       960
     atttaaattt acgtcttaga tacaatttca gttatgataa aataaaatta tttactaaaa      1020
     actcatttat tacgattcac tatgaatcaa ttattacttt tacatcaatt tgattactca      1080
     accttaaaac attcacaaat taaagttgcc cccaagtatt ttaccttgga tatgagattt      1140
     ttacaaattt aaaatataaa ttacaatata tgtgttagka tttcataact taagaataac      1200
     taatctggac ttttccacta aataaaaata gaaatacacc tacatttaaa tagcgccaag      1260
     ggtgcaaaga taatgcaaac gtaagcatga acattgtttc aggacgcccc aaaaaatgtc      1320
     cagccttcca cccgttgaac cactgcaatg tgacggcgac cccatgtcac tgggactccg      1380
     ctgggagaag tggagacggg ctctagaaat atatcttctt gcgtcagaaa taaaaaaccc      1440
     agttataaaa agagccactc ttctgcatat gggtggcaca gccttacaag aaatatacta      1500
     taatacccct ggagcacaca ttgagggttc agacgtaaca gactcaacag atgtttacag      1560
     ggtagcaata gataaactta acgagtactt tttgcctaaa caaagcaaag tttatgaaag      1620
     gcatatattt agattactta aacaagaaaa tgatgagaaa tttgaaaaat ttcttgtaag      1680
     gctgcgtcag caaagcaaaa agtgcaaatt tgccaatggg gaagacgaca acataatcga      1740
     tcaagtggtc gaaaaatgca attcgatgga actcaagaaa aagatcctta ccttaggtga      1800
     tgacgttaca ttggacaaag tcatagcgga agctaatgct atagagtcag tacaaaggca      1860
     gctctctgat tacggcaatg gtagtgcacc gcgtcccatt gcgaatataa atagaattga      1920
     tgctaagcgt caatttgacc aaaataaaga ttgctcacgt tgtggaagtg agaagcataa      1980
     tggtgacagt ctatcatgcc cggccaaaga taaaaaatgc tcaaagtgcg gttatattgg      2040
     acatttcatg gctaagtgtc gaacgcgggc tagtaaacgt agatcgacac acgcgaatgg      2100
     aggaaaaatg cctattaaaa agattaaact tgacaatagc gtcaaaaaat ccgaaaattc      2160
     taacgacgat cagaaaaagg catcatccaa cgtcaattat atattttact ttgatgggga      2220
     cggaaaaata aaatgcgaca tcggcggtgt cgataacatt gaacttctaa tagactctgg      2280
     aagtaatcat aacatattga ccgataaaac atggaccttt cttaaaagtt gcaatataca      2340
     ggctacagaa caaaatgcaa acccagagaa aatatttatg gcgtacggta gctcggtacc      2400
     cttgacagtg ctaggttctt tccaagctgt agttaaaatc ggagcagaag aaagaaatag      2460
     taccttttac gttatccaag gcgggacacg agatttactc ggtaaagaaa cagctacaga      2520
     tcttaaagtc ctcaaattag gtttggacat caatgcggta agtgaatctc aaaatcaggg      2580
     acctttcccc aagtttaaaa atataacact agatatagca atagataaga cagtaacacc      2640
     tactagtcaa ccatgtcgac gaattccagt acctctggag gagaaagtta acaaaagaat      2700
     tgacgaatta atagagttgg atataataga acccgtgaat aaaccatcca ggtgggtgtc      2760
     tcctatagta ccggtgttga aaagtgacgg aagcgttcgt ctttgcgtag atatgcgggt      2820
     agctaacaaa gcaattcttc gagagcatta tccccttccc acgatggaca aactcttgcc      2880
     aaaatttagg aaagctcgta ttttttctaa attagacatt agagacgcct ttcatcagat      2940
     cgagattagt gaagagagtc gtcatatcac tacttttatc actacacgag gacttttccg      3000
     ttataaaagg ctgatgttcg gcatctcttg tgcaccagaa ctattccaaa aaacacttga      3060
     gagaattttg ttaccttgtg aaggaacgct taactttatc gacgatatta ttgtttacgg      3120
     cagggatgaa cgagaacatc aaacccgctt ggatcgcgtt ttggaagtcc taaaaaaata      3180
     taatgtaact ctcaataaaa agaaatgcgt ctttaatgct aaggtagttc aatttttagg      3240
     tcatcagctg tcgtcggagg gggtaaaacc tttagacacg tatataaaaa gtgtggatac      3300
     atttagagaa cccaaaacta ttgaagaaat tcaaagtttt ctcggtttat tgaattacgt      3360
     taataaatgg atccctaatt tttcaaccac cactgagcct atcaggaaac tcttaaaact      3420
     aaaaattggt ctcaagtctg acctatcgaa gtactgggaa caagagcaaa aaactgcttt      3480
     tgatcgactt aaaactcaac tccagaatat acaaagtctg ggttattacg acccggaaga      3540
     tcaaactcag gtattagcag atgctagtcc cgttggactt ggggctgtac tagtgcaaat      3600
     tgatgataaa ggaccccgag ttattgcttt tggtaatagg agcctatcgg aggttgaaaa      3660
     acggtactgt caaacggaga aggaagcttt agccttagtt tgggccgtag agcactttca      3720
     tatttatctg tatggtagga aaacattcga tcttataacg gaccacaaac cgttagaggt      3780
     aatttttgga ctcagatcta ggccttgtgc aaggattgaa cgttgggttt tgcgcctgca      3840
     gtcatacaat tatcgtgtcg tataccgccc tgggaaaaac aatatagccg acccattctc      3900
     tcgtttatgc caatccactc ataatacctt cgatcgcgaa ggtgaatccc atataaacca      3960
     acttgttcaa tatgcgagac cctgcgcaat ccctatgcag acgttgatcg aatgctctga      4020
     agcagatgag gagatccaat tagtaaagga ggctttaaac acaaacatgt gggagcctcg      4080
     aattatccag tatcgtatat ttcaaaccga actctggact cacgacggca ttctcctgag      4140
     gaatgataaa attgttattc ccaccagtct taggaaacaa gttttagatg cagctcatga      4200
     aggtcatccg ggcatcgtag cgataaaagg tcgattgcgc actaaagtct ggtggcctaa      4260
     agtggataaa gatgcagagg ctaaagttaa aagctgccgg ggatgcactc ttgtaactgc      4320
     tgggaatccc ccattaccat taaaaagacg ccagttacca gatcaacctt ggcaagacgt      4380
     cgcgatagat tttcttggtc cactgccgtc gggacattac ttactggtaa ttgtggatta      4440
     ttacagcagg tataaggaga taaaagttat gaaaacaatt accacagcag ataccacgat      4500
     aatgttgaaa gagatatttt caagattggg tatacccata accctgacgg ccgacaatgg      4560
     aagacagttc acgagccaag actttaaaaa tttttgtcaa gaaatgggta ttaaattact      4620
     gagtacgact ccttacactc ctcaggagaa tggcgaagtc gagagacaaa atcgggatat      4680
     ccttaaacgt ctacaaataa gtcaaacttt aaaatctgat tggcagtcag atcttttaga      4740
     ttacttaatg atgtgcaata gtacacccca tagctcgaca ggcaaaacac ccggtgaact      4800
     tttcttttcc aggaaattta gagacaagtt accatcgata gttcgagaga agagtggagt      4860
     tgatggggaa gtaagagata aagacactat aatgaaagag aaaggaaaag catacgaaga      4920
     cagaagaagg aaagctacag aatacggaat agaggttgga gaaaaagtgt atgtgaaaaa      4980
     tgtgtcaaaa ggaaataaac ttactgcccc attcaacccc accccacaca cagtactcag      5040
     ctccagtgga aatgaatata atgtaaggaa cgacgataca ggccatgagt ataggaggaa      5100
     catcgtgcac ctaaaaaaag ttcaaggcga atggcaaata tatgatccgg aaaagcacgc      5160
     acaagatgta ccactcgaca gtaatgaggc actggatagt gacaaggatg aataattgtg      5220
     attgaagcat ttgcttcgaa atggttgatt ccgaagatta gttaatttta agttacatta      5280
     attatattgt attttcttca ttttgtaaac aaggaagagg                            5320
//
ID   Gypsy-32_TrNi-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 189-189 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 42 A; 41 C; 51 G; 38 T; 0 other;
     tgtgacgttt aagaataaaa gttagcaatg cgcacgcgtg gcgcccccgg cgggggtagt        60
     cgtaacccga ctgttgagcg gagcggacga gcgcgtgcga cttgcagagt gtataagtat       120
     ttcctagtag tggttttatt tacctgccca accaaggacg ctgaacacca ca               172
//
ID   Gypsy-32_TrVa-I repbase;    DNA;    INV; 8282 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 277-277 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..2098
FT                 /product="Gypsy-32_TrVa-I_1p"
FT                 /translation="MNNNNQFNEQHQEDAFDWSGISAPPLNSWSVNPLLDS
FT                 IRSPFVANPQLAPGYRASLTPNGGSNVQANSSPINQAQGNQSRQNSPALSA
FT                 NFPPIPPQWRNRQSENNQANASINDSQINVHQANQLENQLQSPRPSSAHPV
FT                 GTCYQPPPEGQAVQTDRNLLFDVLEEIKKVNARVDALCVNPSSLSLPPQQP
FT                 HLVRKNPFDQRALTRANSAASLNMHHNQSHASSVRFAELPVFDGDWEHVHP
FT                 KDFVAELSFYFSFHNTPESVRLHDVGRLLTGVASHWYRVLKHKFLSFDHFV
FT                 GEFLACFWGTAQQTSIRTALYTGRCPPGTNELVTYFLRQVNNAQYLDEPLS
FT                 EAATVSTILAHFPLDVRQAFTHADTFTICSAMAILQRVENNRKLPKYGIQQ
FT                 AYSMPPPMLKNESYKQENYKNKQQNSSARVNVAAIEGPTDEMTTMMPNPNQ
FT                 NSLNC"
FT   CDS           2053..6702
FT                 /product="Gypsy-32_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NDNNDAKSESKFFKLLECWSGNKPRPAQSCHPLKLKS
FT                 RGTPEVYFGCPEGMKLTMFHLKVFSLPKTSPPLNVLLIVPPEFISSGKKHY
FT                 IQSRDVLYEFNPVKHLELKHISELQSYISWMNLGEFHSIWAIFNPTALFDF
FT                 KHMLAYATSLSEEDFKSSFVDISLTFTPINLLISLSKNIPILLCEFRHQNS
FT                 EGDFRQVLLRILNQEFSLLADKCKNLSLINVNSLIKAEHTVDKDNLNLSGK
FT                 KLLLNCFLESNKSLPQLTPAVNTCSVECNTAFVNDDNLLLAEEDKPLSNAR
FT                 CKSPYVTCKIAGQTVDALIDTGAEATLMSQEFYDYLRANSNVDFPTLPTPS
FT                 LYLKGVTGVKSCRVQYQVFADIFFSDTCFQKSVLVVPNISAQFIIGIDFLT
FT                 QFKAVIDCNEKSLKFFNGQLSVPWLSLDPIVTQRITCLTPITYIFADSHGR
FT                 NLESLLKHKLFSDNVVVSFKPGAPFNDVIKEIEAKADTFRDIDNIVIIGGT
FT                 NNLRNKYDLNEIKSQFNLEALDSIKSHVILFEIFPRHDIGEFRDLTTNLNL
FT                 MFLNHFKKRPNVSVIKSQDLFVRKDFTLHGLHLNHRGKIKLVDKIVKEINQ
FT                 FNDLKDQFSFCQGTEIRLSENSQLNFCETLEDDPEIQDECEKPMILPGSLS
FT                 EEDISVKLQSLSLTPEEKQQLCDLLYNNKDIFSDLPGCCNKFTASFRLSDN
FT                 EPYIKRSYPVPASRREMVKEEIRRLLDLGIIEKSYSPYSNPLVAVVKKDET
FT                 CRLCLDARTLNSKLISDAEAPEPMESLLYKFPKPNYISTLDCTASFLQIPL
FT                 ADDGSRDLTSFCFEGVNYQFTRLPYGTKVSMQMFIKATNKTFGPEVESFFT
FT                 KYVDDFRVVSQNFTDHLKHLEIIFSKVRDAGLTLKFSKCNFLSDQVDFLGF
FT                 LLTKDGIKMNPDRSLAVSDFPTPRSSNDLQSFLGFVNFYSKFSAKHANLIE
FT                 PLLGLTKKGAKWHWGPREQEAFERVKSNFIDTVMLAYPDFNKPFFINTDAS
FT                 FVAVGGELFQYDVEDHRRPIIYCSRVLKQSERNYTITELELLAIVVCCAKF
FT                 RPFILGYPTTVMTDHRALTFLSTCFLNSGRLTRWALQLQPYDLKVEYIKGS
FT                 ENLAADTLSRYPPELHQVPPNTLEINVRTFKNVINNSLLKSLKNLPSSQLA
FT                 DPRLGRIIRSIKSATHFRGETLYCLHQDLLFQNNKLKGTFRLCIPQNLEFS
FT                 IIEQAHKAIGHFGARKTYNYLKTSAIFPKMEKKIRKFVSACDDCQKCKVPN
FT                 RVSHLPLQPVLTSELLGLLSVDLFGPLPKSKGNFSWIFVLLDVFSKYVKLY
FT                 PLRRATGVMVTRKLIENYVPDIGKPKFVLSDHGPAFISKVWHSKLKENNII
FT                 PTHTSVYHPSSNPVERYMRTLGNLVRIYCRDKHSDWISHLDFFENCINNTL
FT                 NDSTGMTPVEIMKNVEPQTFLNSLIKFPENVNPPNLHLKFELLEKKLLSKA
FT                 QQRKIKHDSKYEMSQFKVGDRVLVRAHHLSNASLGEAKKFFALFEGPYSIS
FT                 RVLKENAFEIINTDTGEKLGVHNGAHLKLYVTLK"
XX
SQ   Sequence 8282 BP; 2403 A; 1847 C; 1542 G; 2490 T; 0 other;
     gaatggcgcc ctcctaaagt gcatgatttg atgttttcat caattcaata aaacgaatcc        60
     tcccctcgat aatcccgtgt tgtgctacgt tcgcggtttc attatttcta accttaacac       120
     gtgctcctcg ccggttcgcg atgtacgtat gtatacggct atactataaa tcatcacggc       180
     cgggccggaa tgttgtgcta tcgttacaaa tatctgtgca ttttattaat agttcttttt       240
     tcaatccggt ccatgacggc cgatccaact tgtgcgggtt gatccttcct taaaatttca       300
     cttctctcgt tttcacggac aattttttta tctttgtttc accttgctga agtttgttca       360
     gctcttgata tcaatgttta ttatgacgat ttcggcttaa cttttaacaa taatcatcga       420
     tcttcaaaat ttctcaatat gtaaccttat tcttccaaat tcaacaactc atcatgagag       480
     gcgctgatgg tcctcaccac cgttcatctc aaggaatctt ctcgaccata ctggaacgag       540
     ctgccaagga ctggaggatc tagttttcaa tctcgtctaa tctggacctt cgttctctct       600
     ttttcagcgc tggccaagga ttactggatc gaagtattaa gtatatgttg ttaaatcttt       660
     ttccttttat atttaattct taagcgaact gttctgtcgc tagttcaaat tctctcttat       720
     cagtgcttcc atattcagtt tgataaaaat gaataataat aaccagttta acgagcagca       780
     tcaagaagat gcgtttgatt ggtcgggcat atcagcccct cctctgaatt catggagtgt       840
     caatcctttg ctggattcta ttcggagtcc atttgtcgct aaccctcaat tagctccggg       900
     ataccgagcc agcctgacgc ctaatggtgg aagtaacgtt caggcaaact cctcaccaat       960
     taatcaggct caagggaatc aaagtaggca aaattcgcct gctctttcag caaattttcc      1020
     accgattcct cctcaatgga ggaaccggca atcggaaaat aatcaagcaa atgcttcaat      1080
     aaatgatagt caaattaatg tgcatcaagc aaatcaactt gaaaaccaac tccaatctcc      1140
     tcgcccctct tcagctcatc ctgtagggac atgttaccag cccccgccgg aggggcaagc      1200
     tgtgcaaact gatagaaatt tgttatttga tgtattggaa gagataaaaa aggtcaacgc      1260
     ccgagtcgac gcactctgtg tcaacccctc ttcgcttagt ttaccacctc aacagcctca      1320
     tttggtccgg aagaatccgt ttgaccagcg tgctttgacc agggcaaact cagcggcctc      1380
     tctaaatatg catcacaatc aaagtcatgc gagtagtgta aggtttgcgg agcttcccgt      1440
     cttcgacggg gactgggagc atgtccatcc gaaggacttt gttgcggagc ttagttttta      1500
     tttctcattt cacaacacac ctgagtcagt aagactacat gatgttggtc gtctcctcac      1560
     aggtgttgcc tctcattggt atagggtgct caagcacaaa tttctgtcat ttgatcattt      1620
     tgtcggtgag ttcctcgctt gcttctgggg cactgctcag cagacctcaa tcaggacagc      1680
     gctgtacact ggccgatgtc ctccgggcac aaatgaatta gtcacatact ttttgcgcca      1740
     ggtaaataat gcccagtatt tagatgaacc tctctctgag gcagctacgg tctcgaccat      1800
     tttagcccat tttccgttag atgtcagaca ggcgttcact catgcagaca ccttcaccat      1860
     atgctctgcc atggctattt tacaaagagt tgagaacaat cgcaagcttc caaaatatgg      1920
     aatccaacaa gcgtatagta tgccacctcc tatgcttaaa aatgagagct ataaacagga      1980
     aaactataaa aacaaacagc agaactcttc tgctcgtgtc aatgttgcag cgatcgaggg      2040
     gcctaccgat gaaatgacaa caatgatgcc aaatccgaat caaaattctt taaactgtta      2100
     gagtgctggt caggaaacaa gcctcggcca gcacaaagtt gccatcctct aaaattgaaa      2160
     agcagaggca ctccagaagt ttattttgga tgcccagagg gaatgaagct aaccatgttt      2220
     catctcaaag ttttttcact gcccaaaact tctccaccgt tgaacgtact attgatagtt      2280
     ccaccggaat ttatttcatc aggtaaaaaa cactacattc agagtagaga cgtactttat      2340
     gaattcaatc ccgttaaaca tctagagtta aaacatatca gtgagctgca atcgtatatc      2400
     tcatggatga atctgggaga gtttcattcc atctgggcaa tctttaaccc tactgctctt      2460
     tttgacttca agcatatgct ggcttatgca acctctttgt cagaagagga cttcaaatca      2520
     agctttgttg atatatcatt gacattcacg ccaattaatc tactaatttc actgtctaaa      2580
     aatattccga ttctgctttg tgaatttagg caccaaaaca gtgaaggtga ctttcggcag      2640
     gtattgttac gcattcttaa tcaggaattt tctctgttgg ctgacaaatg taagaatcta      2700
     agtcttatca atgtaaactc cttaataaaa gctgaacata ctgtggataa agataacctc      2760
     aacctctctg gtaagaagct tctattaaat tgtttccttg aatcaaataa gtcgctccca      2820
     cagttaacgc cagctgttaa tacatgctca gtagaatgta acacggcttt cgttaatgat      2880
     gataaccttt tgttggcaga ggaagataaa cctctcagca acgcacgctg caaatcaccc      2940
     tatgtaacat gtaaaattgc gggtcagacg gttgatgcgc tgatagacac aggcgccgaa      3000
     gctacgctaa tgtcccagga gttttatgat tatttaagag caaactcaaa tgttgacttt      3060
     cctacgctac caactccaag cctgtatcta aagggcgtaa ctggcgtaaa atcctgccgg      3120
     gtgcaatacc aagtatttgc agacatcttc ttttctgaca cctgtttcca aaaatctgtc      3180
     ttagttgtgc caaacatttc agcccagttt atcataggta tagattttct tacccaattt      3240
     aaggcagtaa ttgactgcaa tgagaaatcc ttgaaatttt ttaacggaca acttagcgta      3300
     ccatggctat cgctggatcc tatcgtcact cagcgcatca cctgtctgac accaataact      3360
     tatatttttg cggacagcca cggcagaaac ttggagtccc tcttaaagca taaactgttc      3420
     tctgataatg tagtagtctc ttttaaacct ggagctccct ttaatgatgt gattaaagaa      3480
     attgaggcaa aggctgacac ttttagagat atagataata tagttataat tggggggaca      3540
     aacaacctta ggaataagta tgatctgaat gagatcaaat ctcaattcaa cctcgaagcc      3600
     ctagatagca taaaatctca tgttatctta tttgaaatct tcccgagaca tgatataggc      3660
     gaatttcggg acctaaccac aaatcttaac cttatgtttc tgaaccattt taaaaaacgt      3720
     cccaacgttt ctgtgataaa atcccaagac ttatttgttc gaaaggactt caccctccat      3780
     gggttacacc tcaaccaccg aggaaaaatt aaacttgtag ataaaatagt gaaagaaatt      3840
     aaccaattta atgaccttaa agatcaattt tccttttgtc aaggaaccga aattcgtctt      3900
     tcagaaaatt ctcaattaaa tttctgcgaa actctggagg acgatcctga aatccaagac      3960
     gaatgtgaaa aaccgatgat tttaccaggt agcctctcag aagaggatat tagcgtcaag      4020
     cttcaatctc ttagtttaac cccagaggaa aaacaacaac tatgtgatct cctttacaat      4080
     aacaaggata tattctccga tctccctggg tgttgtaaca aattcactgc atcattccga      4140
     ctttctgaca atgagcctta tataaaacgg tcatatcctg tgccagcttc tcgtagagaa      4200
     atggttaaag aggagattcg tagactcttg gacctcggca ttatagaaaa gagctacagt      4260
     ccctattcga atccattggt agcagtggtc aagaaagacg aaacgtgtcg cttatgtttg      4320
     gacgcacgca cattaaacag caaactgatc tctgatgccg aggccccgga gccaatggaa      4380
     tctctgcttt acaaatttcc aaagccaaac tacattagta ccctagattg tacagctagc      4440
     tttctccaaa taccattagc agatgatggt tcaagagact taacaagttt ttgctttgag      4500
     ggagtaaact accagtttac gagactccca tacggcacaa aagtgagcat gcagatgttt      4560
     atcaaggcca caaacaaaac atttggtcca gaggtagaaa gctttttcac aaaatatgtc      4620
     gatgatttca gggtcgtctc ccagaatttc acagatcact tgaaacacct tgagatcatt      4680
     ttttcaaaag tcagagatgc aggactcaca ttaaagtttt ctaaatgtaa ttttttgtcg      4740
     gaccaagtag acttcttagg attcctacta actaaggatg ggatcaaaat gaaccctgac      4800
     cggtccttag ctgtaagcga cttccctaca ccgagatcct caaacgacct tcagtcattt      4860
     cttggttttg ttaactttta ttcaaaattc tctgcaaaac atgcaaacct catagaacct      4920
     cttctaggtc tcaccaaaaa aggtgcgaaa tggcattggg gtccccggga gcaggaagcg      4980
     tttgagcgag ttaagagcaa ctttatcgac acggtcatgt tagcataccc agacttcaat      5040
     aaaccattct tcatcaacac cgatgcatca tttgtggcgg tcggggggga actcttccag      5100
     tatgatgtcg aagaccatag gcgaccaatc atttactgca gtcgagtttt aaaacaatcc      5160
     gaacgcaact ataccatcac agaacttgaa cttctagcaa ttgtagtctg ttgcgctaag      5220
     tttaggccat tcatattggg ttaccccacg accgtcatga ctgatcaccg agctttgacg      5280
     ttcctcagta catgcttcct gaactcgggg agactcaccc gctgggcgct ccaactacag      5340
     ccatatgatc tcaaggttga gtacataaag ggatccgaaa acttagcagc ggatactctt      5400
     tcaaggtacc cccccgaact tcaccaagtg cctccaaaca ccttggaaat taatgttcga      5460
     acatttaaaa atgtaattaa taattcttta ctcaaaagcc ttaagaatct gccaagtagt      5520
     caacttgcgg atcctagact tgggagaatt attcgtagta tcaaaagtgc tacccatttc      5580
     agaggtgaga ccctctattg cttacaccaa gatctcctct tccaaaataa taaacttaaa      5640
     ggaacttttc ggctatgtat tcctcaaaat ttagaatttt ccataataga acaagcccat      5700
     aaggcgatag gccactttgg tgctagaaaa acctataatt atctaaaaac ctcagcaatt      5760
     ttcccaaaaa tggagaagaa gatccgaaaa tttgtctccg cgtgcgacga ctgtcaaaag      5820
     tgcaaagtcc ccaatagagt gtctcacctc ccactgcaac cagtcctgac cagtgaacta      5880
     ttaggccttt taagtgtcga cctatttggg ccattaccca aatcaaaggg aaattttagc      5940
     tggatttttg ttcttcttga cgtattttct aaatatgtga agctgtatcc tctccgcagg      6000
     gctacaggag tgatggtcac acggaagctg atcgaaaact atgtcccaga tataggtaaa      6060
     cctaaatttg tcttgtcgga ccatggtcca gcttttatat ctaaagtttg gcactccaaa      6120
     cttaaggaga acaacatcat tccaactcac acttccgtgt accatccctc ctctaaccct      6180
     gtggagagat atatgcgcac actaggaaat ttagtgagaa tttactgtag agataaacac      6240
     agtgattgga tatctcatct ggacttcttt gagaattgta ttaataacac gcttaacgat      6300
     tccacaggga tgaccccagt tgaaattatg aaaaatgtag aaccccaaac ctttttgaat      6360
     tctctcatta aattccctga aaatgtcaac cccccaaatc ttcaccttaa atttgaactt      6420
     cttgaaaaga aattactgtc aaaagcccag caaagaaaaa ttaaacatga ttccaaatat      6480
     gaaatgtctc agttcaaggt gggggatagg gtattggtca gggctcacca cctctcaaac      6540
     gcttcattgg gtgaagccaa aaagttcttc gctctgtttg aggggcctta ttcaatttcc      6600
     cgtgtactaa aagaaaacgc ttttgaaatc attaatacgg acacagggga aaagttgggg      6660
     gtacataatg gtgctcattt gaaattatat gttactctta agtaaacaac tttttttttt      6720
     gtatttacat gttttgtgaa atgctgaccc accctctctt cggaggaggg gggtcaactg      6780
     ataatctgtc ctctcttcgg aggagggggg tcaactgata atctgtcctc tcttcggagg      6840
     agggggggtc aactgataat ctgtcctctc ttcggaggag gggggggtca ataggttaag      6900
     tatcaaactc catcctttac ttttttttct cttttaactt tactttgttt tctttcagcc      6960
     gcgtaacgtg gcacacattg tattatcaac ccttattaac ctaaaaaaga atgttcatgt      7020
     caagaacatc ctatcgctcc tcagactttg actagaaatt tcttttgctt ttccaagatc      7080
     caatcaacgc ctagtagtcc ataagagcct aactactgta attaagcaaa atccttgtgg      7140
     gactgaggcg tgtgtgccaa aaccatgaga agtatcccgt ttcttttttt agtctttccg      7200
     tgcccaaagt tgaaggagtt actttggcac ctgtattctc cccatcccta aaacttgaaa      7260
     cactgatagg actgatgcgt gtgtgcggaa actatcaggt gtttccattc cacgtgctct      7320
     ggtcgactcg tggaagaacc tgtgaggtcc gagcaggctg ggccactcac agtttttatg      7380
     tcacctctgg gtcaatgcca actttttatg tcacccttag gtcaatgtaa atttcctagg      7440
     taattttcaa attttgtctt accgacttgt aaaactgttc taactctaga ccaacccttt      7500
     tttttttaac cccaattttt tttatcgact gcttggtaga aacaaactac actcttgagg      7560
     tgtaagcccc tcttgagaag ctccccaatt ccccataaag ggtcatccac aatactctgt      7620
     attgggctta aatatcaaag tctgagtaat taaaaaattg tatcaaaatt gtctttaatt      7680
     tcttattaat tgtcgactca tccttttagt aattacttcc ccccaccgat cgagatttat      7740
     agtaggtcta actctcagtc aattttgttt tgtctcttta tgttatttta tttctgttca      7800
     tcttgtaact tggtgataaa taccactcgt tttatacata tgtttgttaa aacctttttt      7860
     atcctttaga aaatatctaa agggtgttta tttgtaaata actttgtacc actcgttgta      7920
     tacatatgtt tgttaaaacc ttttttatcc tttagaaaat atctaaaggg tgtttatttg      7980
     taaataactt tgttctatgc ttttttagtc aatgacttta acttttagtc aataaaataa      8040
     ggaggtgagg gacataaatc gaccggaacc aacagtaaca tttaccaaaa ttgtaatacc      8100
     actttggttg gacggctggg cggagcccca ggagtcctat caattacctt tttcgttcaa      8160
     aattttcctt ctctatcttt acgcttttct cttcggaggt ccaatcgccc aggtcactcg      8220
     gattatcacc ctgactactc gtcgggatgt tgcccgagtg ccctgagcga ttggggggta      8280
     tc                                                                     8282
//
ID   Gypsy-32_TrVa-LTR repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-32_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-460
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 336-336 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 460 BP; 105 A; 122 C; 83 G; 150 T; 0 other;
     tgtaacgggg tgaaaatgga ttttcccatc tcccgccaaa ttttgaactt tctgggcaac        60
     caacaacagc caatggcgac tcttgggact ccccccagac gtccaaccat tgacagccaa       120
     tgagagacag gcatcgagcc cagctcggcg tctgtctccc acaatgcatc attcttaaat       180
     ttcttaggaa cgcacgagga tgtaagtttt tgttcgcgtt tttcttttct ttctttaaaa       240
     ccttttattg ctttgggagg agagaaaata acgtaagttg tcttttgaaa acgtgccgat       300
     ccttcgggat cggtacaatc tttatcttat gttattttct ctcctcccga acctactatt       360
     cggtcggtgc gtccctcacc tcatctttct tctcaatctc aaaccacgtg tcgtctacct       420
     tttttaactt atctttttct tgcgaaatca ccgcttcgca                             460
//
ID   Gypsy-33-I_NVi repbase;    DNA;    INV; 6762 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy-33-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6762
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 1002-1002 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           214..1929
FT                 /product="Gypsy-33-I_NVi_1p"
FT                 /translation="MADAGKNIFSSTLRKSGTVTRSASAEILKSQLNDTLN
FT                 AVLTTDDANQSMIDDPSLNANWARKVHEALKYLLEKADETSEIVNDLNKKH
FT                 KKIDKXEQXEQNGLKYTALNINYDTLXTXVDEIDSSIINKPDNDDLEKFKE
FT                 NVENSIDSKVALKFSELRLEAQPETSPSANVEALINMAIRKHEEEAEVLLT
FT                 NMKXDITTKLTALTNTSQNLLKITKSNETRIKSLEVEHTTYNNALLKCDES
FT                 LQNLKAYIENSNKSFSEEFQTLTSKINKIRSSSHEITLDGNNTTLSLASKS
FT                 PKLKPPTFKADSKEKPMRYLRDLKRYIDVLNVDGAEMNIIISQTLENTASS
FT                 WFDIAQQTINTISDFERKFKARFWNEDIQDEWSRKVEYNRYNXGSKYSHLE
FT                 YATYVWGFAQDLERNFSEAELVRKISNHFDWDIRFTVKSQNINTQDKFFEL
FT                 LAFKDNGHNERQSLFKKKFNSDDSNTESSGNYQTNKATNQQSNFQNKNFXK
FT                 KTPQIQTLNVIEAKTSNPAKPTIKETGTKPKTIISKPTTTKFLLEDSLNDC
FT                 LEDTWGTLTLSIKTNNSCFLCLGK*"
FT   CDS           5835..6428
FT                 /product="Gypsy-33-I_NVi_3p"
FT                 /translation="MGRTFKRSAQLTRNSVVYPRKLISGVDVLVQTVPLGQ
FT                 ETSHPGDRVITPRSAEERARLAHTWKSRGVRMPFGRAVQCDSTPPPPPRTG
FT                 ETPAPRAVSVPPAPATHAISVSPAPAPHLHSHRRALRLLXRHHLHQLQQSP
FT                 ASPTSKQSRSTWRNTXDDARSQEARGLRRRGFAGSRRSCVSYSTRQLSPPP
FT                 PPTKQPW*"
FT   CDS           1892..5353
FT                 /product="Gypsy-33-I_NVi_2p"
FT                 /translation="KPITVVSCASENNLNNISDIQGTTDKQISVCTIFNNP
FT                 REDLLYESDDDSKNDEICACPEIKIKINNIPIKALVDTGSQITCISENFYL
FT                 INIDKFKNIXTLPIVGTIIRGATGLKSTRLNKQLMXTTQIGTCTKDLIFLI
FT                 IPKLIRDCILGIDAIKELGFLIDTKYDEITIRINNKIEKLSYKSKSLLESN
FT                 MDHRYIEILEEDTTMNVDSHSPLRPVLNKARCQKSLNELTYRQNDRNSLVD
FT                 PYDITDMEINEKIKSCVVKNPETINKLRNLIQKYRKVFYKKPGRLVGFEYK
FT                 LKLKENPEPFFIPPYPVNINMKSKLREQIEVMLNWKIIRRSSSNFISPFVP
FT                 VIKKNDTIRLCLDARKVNEMLEDDLESPQNIEELLQQCHGVEVMSSLDLTS
FT                 SFWQIPLSEESKQYTAFMFEGKLYEFEVVPFGTKISSAALIRGLFHVTKNL
FT                 GDFILNFVDDFLCISKSEKDHLDHLERLFESLIKWNFTLNFKKSEFFKKET
FT                 RFLGFILSTKGIKPQENKIEAIKNYPIPKNIKQLQAFLGTINFYAKFAKNH
FT                 AHELLPLLELLKKDKQKSWGWGDRQQKAFDKVKELFEKDVCLAYPDPSKPY
FT                 ILRCDASDFAIAGALSQIDDNGDERVIIYISRTLKAAEITYFTTEKELLAV
FT                 VWSLQKLSTYLRAAKVYIKTDHKALIFLFKCKFVGNRIRRWILGTQDYNLV
FT                 IDHVSGKENVVADMLSRHPNFNXEEQRKPGEIIIAIFKRXKFTKDLMYKFK
FT                 HLSKLQHDDEYLNQLFTKNSDQKNQSNNFTYLIENDIIYKKNQSNQYKIMV
FT                 PKEMIKILILETHETYGHVGAKKVIRMLQEDFYIKNLRHKAQKLISFCDSC
FT                 QRNKISTRPCTAPMESIIPEAPHDLLSIDFYGPLPTGRGGMKYILVTIDAF
FT                 SKFVVLYPIRRQTCTTAIKKIFNDYVLLYGKPKRISCDHGSQFTANAWIEK
FT                 LREENIDLVFSSIRHPQSNIVERVNKELGRFFRTFTSEKHTGWVGYINIIQ
FT                 TIINETYHETTSFTPIELHLMGIKPKRAWKNWIHPINSEVEPPLEQKIYLA
FT                 RERIISKAQKRAEKYNLQKKXFFVEFKEGDEVLLKSNNISDLDNKKIAKFF
FT                 SIYEGPYEIQKKIGNTTYLLFDRDKQKEKGRFHINDLKEYKREPK*"
XX
SQ   Sequence 6762 BP; 2505 A; 1278 C; 1164 G; 1769 T; 46 other;
     ttggcgatcc tgccaggata ccgggttttc aaagtggaac ttattacaat aataatcaaa        60
     tcctcctatg acacatatat tgcaatttac gcaataactc aaatgcaatt tatgcaatac       120
     aaacaactct gatttgcatt attaagcaat ctacacaaac aaacagactt gcaaccattt       180
     tacgcagtca caaataattc agacgaacac aaaatggcgg acgcgggcaa gaacatattt       240
     tctagcacgc ttagaaagag cggtacagtc actcgaagcg cttccgcgga aatmttaaaa       300
     tcacaattaa atgatactct taacgcagtt ctcactacag acgacgcgaa tcaatctatg       360
     atcgacgatc cctcgttaaa cgccaactgg gcacgtaaag tccacgaagc gttaaaatat       420
     cttttagaaa aagcagacga aacgtcggaa atcgtcaatg atttaaataa aaaacataaa       480
     aagatagaca aacragaaca artcgaacag aacggtttga aatacaccgc tttaaacata       540
     aactatgata cacttaraac aaragttgat gagatagatt ctagcataat aaacaagcca       600
     gataacgatg atttagaaaa atttaaagaa aacgttgaaa attctatcga tagtaaagta       660
     gcycttaaat tttccgaact tcgactcgag gctcaaccgg aaacaagccc ttcggcaaac       720
     gtagaagcct taataaatat ggctataaga aaacatgaag aagaggcaga agtyttatta       780
     acaaatatga aamaagacat aaccacaaaa ttaactgctt tgacaaatac aagtcaaaat       840
     ttattaaaaa taactaaatc gaacgaaaca cgtatcaaat cmcttgaggt agaacacaca       900
     acatataaca acgcacttct taaatgcgac gaatcgttac aaaatttaaa agcatatatc       960
     gaaaattcta acaaatcttt ttcagaagaa tttcaaacct taacaagtaa aatyaacaaa      1020
     attcggtctt caagtcacga aattactctt gatggaaata acacaactct gagtctcgcg      1080
     tcgaaatcyc ctaarttaaa accgccaacg tttaaagccg acagcaaaga aaaacctatg      1140
     cggtatttgc gcgatcttaa aagatatata gacgttttaa atgtagacgg cgctgaaatg      1200
     aatataataa ttagccaaac attagaaaac acrgcttctt cgtggttcga cattgcacag      1260
     caaacaatta atactatatc ngatttcgag agaaaattta aagcacgatt ttggaacgag      1320
     gatattcaag atgagtggtc wcggaaagta gagtacaacm gatataatwc tggttcaaaa      1380
     tactctcatc ttgaatatgc tacgtatgtc tggggattcg cgcaagattt agaacgaaac      1440
     ttttcagaag ccgaacttgt aagaaaaatt tcaaaccatt ttgactggga catccgcttt      1500
     acggttaaat cacaaaatat aaacacacaa gataaatttt ttgaattact tgctttcaaa      1560
     gataacggtc acaatgaaag acaatctcta tttaagaaaa aattcaattc ygacgattcg      1620
     aacacagaat cctctggaaa ttatcaaaca aataaagcta caaatcaaca atcaaatttt      1680
     caaaacaaaa attttscaaa gaagactcct caaatacaaa cgttaaacgt aatcgaggca      1740
     aaaacgagca acccggcaaa acctactatt aaagaaacgg gyacaaaacc yaaaacaata      1800
     atttcgaaac caactacgac aaaattttta ttagaagatt cgttaaatga ttgtttagaa      1860
     gatacttggg gtaccttgac attgtcaata aaaaccaata acagttgttt cttgtgcctc      1920
     ggaaaataac ttaaataata tctcagatat acaaggaaca actgataaac aaatttcagt      1980
     ttgcacaatt ttcaacaatc ctcgagagga cttattatac gaatcagatg acgacagtaa      2040
     aaacgatgag atttgcgctt gcccggaaat taagattaaa attaataata ttccaataaa      2100
     agctttagtt gacaccggaa gtcaaattac atgcatttca gaaaatttct atctgataaa      2160
     cattgataaa tttaaaaata ttsytacctt rcctatmgta ggtacaataa tymgaggggc      2220
     gactggcyta aaatcaactc gtytaaataa acaattaatg tgsactacac aaatcggtac      2280
     ttgtacaaaa gacttaattt tcttgatwat tccaaaatta atmcgagatt gtattctcgg      2340
     aatcgatgca atcaaagaac ttggttttct tatagataca aaatatgatg aaatcacaat      2400
     acgtataaat aataaaattg aaaaattatc ttataaaagc aaaagtttat tagaatcaaa      2460
     catggatcat cgctatatag agatactcga ggaggataca acgatgaatg ttgattctca      2520
     ctcaccactc cggccagtgt taaataaagc cagatgccaa aaatctttaa atgaattaac      2580
     gtatcgacaa aatgatcgta attcattagt tgatccatac gatattactg atatggaaat      2640
     caacgaaaaa attaaatcct gtgtagtaaa aaatccagaa acgatcaata aactcagaaa      2700
     tttaattcaa aaatatcgta aagtattcta taaaaaacct ggaagattag tcggttttga      2760
     atataaatta aaattaaaag aaaatcctga acctttcttc attcctccgt atccagtaaa      2820
     tataaatatg aaaagtaagt tacgggagca aattgaagta atgctaaatt ggaaaattat      2880
     acgtcggtca agtagtaatt tcataagtcc atttgtaccg gtaataaaaa agaacgatac      2940
     aattcgttta tgtttagatg cacgcaaagt aaatgaaatg ttagaggatg atcttgaatc      3000
     accccaaaac atagaagaac ttctacaaca atgtcacggt gtagaagtca tgtcgagtct      3060
     cgatttaacg tcaagttttt ggcaaatacc tctaagcgag gaaagtaagc agtacactgc      3120
     attcatgttc gaaggaaaat tatacgaatt tgaagtagtt cctttcggta caaaaataag      3180
     cagtgcagct ttaattcgcg gtttatttca cgttacaaaa aatctcggtg atttcatatt      3240
     aaatttcgtg gatgattttc tgtgcatctc aaaaagtgaa aaagatcact tggatcattt      3300
     agaaagatta tttgaaagtt taattaaatg gaatttcaca ttaaatttta aaaaatcgga      3360
     attctttaaa aaagaaacaa gattcttggg ctttattctc tcgactaagg gaataaaacc      3420
     acaagagaat aaaattgaag caataaaaaa ttatccaatt cctaaaaata taaaacagtt      3480
     acaagccttt ctaggcacaa taaattttta cgcgaaattc gcaaaaaatc atgcgcatga      3540
     attactaccg ttattagagt tattaaaaaa agataaacaa aaatcctggg ggtgggggga      3600
     cagacaacaa aaagcattcg ataaagtaaa agagcttttt gaaaaagacg tttgccttgc      3660
     atatcctgat ccatccaaac catacatcct ccgttgcgac gcgtctgatt tcgcaattgc      3720
     gggtgcacta tcacaaattg aygataacgg agatgaacgg gttattatat atatcagtcg      3780
     aacgctcaaa gcagcagaaa taacatattt tactacagaa aaagaactac tcgcggttgt      3840
     atggagtttg cagaaattaa gtacctattt acgagccgca aaagtttata taaaaactga      3900
     tcacaaagct ttaatattct tattcaaatg taaatttgtc ggcaaccgaa tccgtcggtg      3960
     gattctgggc acacaagatt ataatttagt aattgatcac gtatcgggta aagaaaacgt      4020
     tgtagccgat atgctaagtc gacatcctaa ctttaatyca gaagaacaac gaaaaccggg      4080
     agaaattatt attgcaattt ttaaaagaya taaattcacg aaagatttaa tgtataaatt      4140
     taaacatttg tcaaagttac aacacgatga cgaatattta aatcaattat ttacaaaaaa      4200
     ttcagatcaa aaaaatcaaa gcaataattt tacttattta attgaaaatg atataattta      4260
     caaaaagaat caatcgaatc aatacaaaat aatggttcca aaagaaatga ttaaaatact      4320
     tattcttgaa acacacgaga cttatggcca tgtaggcgcg aaaaaagtca ttcgtatgtt      4380
     acaagaagat ttctatataa aaaatttaag acataaagct caaaagctta tttcattttg      4440
     tgactcatgt cagagaaaca aaatttccac tcgaccatgt acagcgccaa tggagtcgat      4500
     aattccagaa gcgccacatg atttattatc cattgatttc tatggtccgt taccgaccgg      4560
     gcgcggcggt atgaaatata tacttgtaac tatagacgcg ttttcaaaat tcgttgttct      4620
     atatccgatt cgtagacaaa cttgtactac agcgataaag aaaattttta atgattatgt      4680
     tttgttatac ggaaaaccga agcgtatttc atgtgatcac ggctcacagt tcactgcaaa      4740
     tgcgtggatc gagaaattaa gagaagaaaa tattgattta gttttttcat ctatccgaca      4800
     tccacaaagt aacatcgtcg agcgagttaa taaggaactc ggtagatttt ttcgtacatt      4860
     tactagtgag aaacataccg gttgggtcgg atatattaat atcatccaaa ccattataaa      4920
     tgaaacgtat cacgaaacaa caagttttac tccgatcgaa ttacacttaa tgggtatcaa      4980
     acctaaacgt gcgtggaaaa attggataca tccaattaat tcagaagtcg aacctccgct      5040
     tgaacaaaaa atttatctcg ctcgggaacg tataatttca aaagcgcaaa aacgtgcwga      5100
     aaaatataat ttacaaaara aamcattttt tgttgaattt aaagaaggag acgaagttct      5160
     attaaaatca aataatattt cagatttaga caataaaaaa attgcaaaat ttttttcaat      5220
     ttacgaaggt ccatatgaaa tacaaaaaaa aattggtaat acaacttatt tattatttga      5280
     tcgcgataaa caaaaagaaa aaggaagatt tcatataaat gatctaaaag aatataaaag      5340
     agaacctaaa taaatagaat attatttgat tacacaatag aaaaattcgt tactctcact      5400
     catsaaayat tgtaaagaaa aaatgatcac gctcaaaaag artcgcgttt ctatttcata      5460
     cattaktttt gaacactcag agctgtatat atacatgtaa acaagccagc acggctagtc      5520
     ccgactcaag aatgcagagg ggaggtatag tccgtctttt tctctttccc cactctcccg      5580
     cggcaacaca actcgtgtcc gcaaagccgc gagttccccc tctcttacta cacgcatagc      5640
     gttgccacgt cactttctca gcgaacctaa gattttaggt atacgtgaga agcgggaaaa      5700
     ttcaaaaata tgacaacatt gtcatttctc ctctttcgga gctgctccag ctttcyccat      5760
     aaaagggctc gcgctaggct gacgccgtca gtttttcgac ggtcgcaatt taagcgcctt      5820
     agaaaaatct agccatgggc cgcacattta agcgctcagc gcaacttacg cgcaactccg      5880
     tggtttatcc acgcaagctc atctccgggg tggacgtttt ggttcagact gtcccgttag      5940
     gacaggagac gagccacccc ggagatcgcg ttatcacgcc aaggtcggcg gaggagcgag      6000
     cgcgtctagc gcacacgtgg aagtcgcgcg gtgtacgcat gccattcggc cgcgccgtgc      6060
     agtgcgactc cacacctccg ccgcctcctc gcacaggtga aacacctgca ccacgcgcag      6120
     taagcgtgcc accggctcct gcaacgcacg caataagcgt atcaccggct cctgcgccgc      6180
     acctacactc tcacaggaga gccttacgcc tcctccytcg ccaccatcta catcagctcc      6240
     aacaaagccc cgcatcacca acatcgaagc agtcaagatc gacttggmgg aataccascg      6300
     acgacgcgcg aagccaagaa gcccgaggtc tgcgcagaag agggttcgcc gggtcgagga      6360
     gaagctgcgt gtcttattcg acacgccagc tatcgccacc accaccaccg acaaaacaac      6420
     cttggtgaac gggaagagcg aggtcctgga tgcccttcta cgcaagccaa cgcaaaagct      6480
     gaacccatac gccacctacg ggtacggcaa cagcgtctgg cagcggcagg tcaggcttga      6540
     ctttgaggac acctggaagt cagtgggtaa ggaggaggcg aggctgaaga ggagagtaag      6600
     tgccaaggtc accgcaagag gtatatacag ctctgagtgc atgcatttta agcagcactt      6660
     tttatctctt tattaaaact tataaatata tttttaatca ttttttctcc gggagtatag      6720
     tgaaaatttt tcaatttttg aaaaattttc actaggggac ta                         6762
//
ID   Gypsy-33-LTR_NVi repbase;    DNA;    INV; 1084 BP.
XX
AC   .
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1084
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(5), 1003-1003 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1084 BP; 362 A; 224 C; 195 G; 303 T; 0 other;
     tgtaacaccc cgtacaagct ccgcaaaaaa atttataaat attaaatact aaattatatg        60
     aaacaacatt ttagattata caagagcatc ttatgctccc ccactcccaa tacgaagcta       120
     cgcgccacag ctgacagctg agctcaaagc agcagtacaa cagcagcgcc acgagccagc       180
     cagcggcaac agcagcaagc agcaagaaag cggggagagc gcgcaacacg cgcctatatc       240
     tatatagacc gagcggcgag cgcagcggcg caattataat gagagtagga gtagagagcg       300
     agcggcggcg cggcgtgcgc attatattat aagtgtgtaa atgatttttg tatataggtg       360
     tgaatgagtg tgtgcaagta tgaatgtgat agtttttccg gcggctcgat tcccgctctc       420
     tccgtggcct ataaaaggac ccgcacaacc cgtattagct cactagctga agcgcaactt       480
     aagcgccagc gcaacttaag cgcctagtct cttctcaaga gcaactcacg ccttgagaag       540
     ataaacgact tagaattatt tcgaatattt ctcgaactta taaaatttct gtatctcaaa       600
     tacttataaa attgtcgagt caggcacgat atcgtatctt aaagcgtatc agtcctacac       660
     ttgtcataaa ttcaaagact tgttcaaata cttataaaaa tttcgaacta aagcagataa       720
     cgcaaaattc aagcgtatct acttaaaatc ttatttgtaa aaatcaaagc ggatttattc       780
     atatattttg tgacacagaa tatatgcaac aattaatgca atattcttat ccttaaatat       840
     aatattgaat atatttattt tgttattgaa aagaaataac atacttttat tattgaaatg       900
     aatttccact acctggtatc ccggacctgt cttatatgat aataatacac tactatatat       960
     aattactttc ctatttatga tctgttgtca aaattcggac gtagatcagt aaatgattac      1020
     tgctcttctc taaaatttaa aatctcatac gcgctacgga ccgagaagag tcgtgaccgt      1080
     ttca                                                                   1084
//
ID   Gypsy-330_AA-I repbase;    DNA;    INV; 5038 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.03, Created)
DT   14-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-330_;
KW   Gypsy-330_AA-I; Gypsy-330_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5038
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5038
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5038 BP; 1733 A; 810 C; 1087 G; 1408 T; 0 other;
     gtggcgacga gaaagtgaaa cgaatccaca gatagtgccc cagctcagac ggaaatttcc        60
     agtgtgagct acggtaagta gtttgtagag cagatattga gtcgaacagt gaacttgtaa       120
     gcggagttgc tagagtatct gttgagcata tctgtgacta caggatccat tgtaaaaaaa       180
     agcgtttcca gctagtgaaa ttttgaatac ctattgaaat tgtgaaattt atcattattt       240
     caggatctat tgttttacta tagcgtggca tctaatctcc attttgaaac ttttttcaca       300
     gtcatcatca ttaatcgatc gacattttgt ccgtcggtgc cttctgtaca gatccgagaa       360
     gagtgaagga agcagtgaga ggagagaagt ttatgcagaa tccatgagct gcgactgcga       420
     gcaattctaa gtgagacatc attggatagg agaggagagc gtatatgaaa agatcaatga       480
     gcgaagtgca tgccggttag ctgagcaagg tgcatgagaa cttgtgtcag caaggtcgaa       540
     tcggatagta gatcgaacgg agtgtaaaag ctacctccag cgcgaaagag aagagagaga       600
     caagcaaaac agcagagcag aaacaacaga ggagaagacg accactgcga gattttcggc       660
     ggtgagactg agtagtgagt cgagtgagaa attgcattcg caacgtttga gtgagtgtcc       720
     agcatctaac gtgagtaaac acctttcatt ttctcattgg tagcttacag agtgcatttg       780
     tgcatgcagg tcgatacgaa atgtcggtac caggtatgat tgggaccatt gatcattacc       840
     atacgggtaa atcgtttagt aattatgtag agcgtttcga aattatgtgt aaattgaata       900
     aagttaaacc ggatgagaag aaacagtggt ttatttcact aagcggtgat gatgttttcg       960
     atgagattaa attgctattt cccaagaaag atgttaacga tttggattat gatgaaatga      1020
     taaacaagct taaatgtcgg tttgataaaa ctgaaccagc tctcatgcat agatacaagt      1080
     tttataacaa atatcaagga cacgcagaaa gtgctgagaa ttttgttctg gcggtaaagt      1140
     tgttagcgga aagctgtaat ttcaaagaat ttaaagctga agcggtgaga gataggctga      1200
     ttataggtct ccgtgacaag aaattgcagc gtaaaattct tatggaagat gagataacgg      1260
     ttgatgcggt agagaaattg attataactc acgaagaagc aggagagaga actaaggaaa      1320
     ttgttgatcc gaacgacgcc ggtgcgattt tatccgtgaa aaatcgacta ggtcaaaagc      1380
     atgaagaata taatagcaga aggttcggta gatttcgttc taggagcaga agtagagatc      1440
     gatctgatag tcgctccaga agtagagata gaggcactgg tttttatcgt agtggccgtg      1500
     aacgtgagtg gaatggacac agcaaggccg tatgtaatca ttgcaaacgt gtagggcata      1560
     taaagaaaaa ctgttggttt cttaacaaaa attcagttaa attcgtgaaa caggaagaat      1620
     cagtgaccga atcagtgccg tttgacaaat ttaacagaat tcgtatcgat gatgccagtg      1680
     ataattctga tatagaatgt ttgaaaatcg gagcaataaa taacgttagc gagccttgtt      1740
     tagtcaaagc agtagttcaa ggtcacgaga ttgttttaga aatcgataca ggttccgcgg      1800
     tgtcagtaat aagtcaaatg atgtataaaa aactatttcg ttcttttaca ttggatcagt      1860
     gtaataaaag attggtagtc gttaacggat caaggctaat agtatcaggt cagctacagg      1920
     ttgaagttca actgaatgga ctaagaagct caaagaagat gatcattttg aaaagcgaca      1980
     aggattttac acctctttta ggacgagatt ggttggagac cttttaccca gaatggaagg      2040
     cacagtttct gaatcctgca atcatcaacc atcttggaat tgagagatta cgcgaaaatg      2100
     caataggtaa tattcaacaa aaattcataa aagtattcag taaggacttt tctgagccaa      2160
     ttaaggggtt taaagctaat ttaactctta aatcagaaaa acctattttt aaacgtgctt      2220
     atcaggttcc atacaagctt aaagaaaagt ttttagatca tttaaacatg cttgaagaac      2280
     aaggtgtaat atctccaacc aatgctagtg aatgggcatc tccaataatc gcaattctga      2340
     agaaagatgg ggaaatacgt atggttatag attgcaaggt ttctttaaat aaagttataa      2400
     ttccagacac ataccctttg ccactcgctc aagatatttt tgcgtcgttg gcaggtagta      2460
     aagtattctg ttcattggat ttaacgggag catatacaca acttgagcta accgatcgtt      2520
     caaaaaaatt tgttgtaatc aatacgatta aaggtctcta cactttcaat cgtttaccgc      2580
     aaggagcctc ctctagcgcg gccttatttc agcaggtcat ggaccaggtc ctaaaaggac      2640
     ttgaaggtgt ctgttgttac ctagatgacg tcctgatagc agggaaaaca tttgaagaat      2700
     gctatgacaa attagttcaa gttctggaaa gacttgctaa tgcaaatatt cgtgtaaatt      2760
     ttaaaaagtg taaattattt gtagaatctt tagcatattt aggccacttg gttacaaaag      2820
     atggtttgtt gccctctcct gaaaaattat caacaataga gaaagctaaa acgccacaaa      2880
     atgagactga acttaaagcg tacttaggac tcattaatta ttacaataaa tttataccca      2940
     atatgtcaac taaattaaga tgtctataca accttctaaa aaaagatgaa aaatttatat      3000
     ggaccaaaga atgtgaagag tcttttcaac aaagcaaaag aagtttgttg tctgctaaca      3060
     tactggattt ttatgaccct tccaaacctt tagtagtggt tacggatgct tcttcatatg      3120
     gtttaggagg cgttttggca caaataacag atggaactga aaaaccaatc tgcttcacat      3180
     ctttttcctt aaacaatgct cagaaaaagt atcctatcct tcatcttgag gctttggcac      3240
     ttgtttgcgc aatcaaaaag ttccacaagt ttttattcgg tcaaaagttt aaagtgtata      3300
     cggatcacaa gcctctcatt gggatttttg gtaaagaggg caagcaatcg gtttatgtca      3360
     caagattgca aaggtacata atggagctct ctatttacaa tttcgaaata gaatatagac      3420
     caggatctaa gatgggaaat gctgattttt gcagtcgttt tccattggat caaaaaattc      3480
     cgagaggcgt agatcaggag acgataaaca gtttgaattt ttcaaatgat tttccaattg      3540
     acttcgcttt gattttgcaa gaaattaaaa ccgataagtt actaacagaa ataatcaaat      3600
     ttgtttcaac agattggccg aacaatatac cgaagcagtt cagggacttt ttcgcagtta      3660
     gagaaaaatt ggaaattgtt gatggcattc ttatgataga agacagagta gttgtaccag      3720
     agaagttaaa acatgatata cttaaactat tgcacagcaa tcatagtggt ctagttaaga      3780
     tgaagcaact ggctaggaga gctgtatact ggccagggct caatgcagat attgaagact      3840
     atgtaaaatg ctgtgaatcg tgtgctaaaa tggcggttgt accgaaagcc aaatgtactg      3900
     agacgtggag cctaactaaa cgccctttta gtagaataca cgcggatttc ttttattttg      3960
     aaaagaaaac atttttgttg attgttgata gctattcaaa gtggcttgaa atagaaataa      4020
     tgcgaaatgg tactaacgca aaggcagtaa ttaaacactt tatttctcta ttcgctaggt      4080
     tcggtttacc agatgtgata gtcacagatg gaggaccgcc cttcaattcc agcgaatttg      4140
     taagtttttt ggaacaccaa ggcatcaaag ttttgaaaag ccctccttat aaccctgcca      4200
     gcaatggtca ggcggaaaga atggtacgag tagctaagga tgttctaaaa aaatttcttt      4260
     tagacaagaa gacaaagtct ttgaatatag aggaccgatt gaacctattt ttaatcaact      4320
     atagaaatag ttgtcttggt acggaaggaa agtttccttc agaaaatgtg ttttcgttca      4380
     aacccaaaat gttagtggat ttaataaatc cacggtatac ctacaaacac tctcaggaaa      4440
     atccacccaa acatacgata gatatcgaag taggaggaaa acacgagcct ccagatgatt      4500
     ttgatcatat ggtggcaggg gataaattat tttataaaaa ctatgacaaa agagatttgc      4560
     ccagatggtt agaggctaaa ttcattaaaa aactttccaa taatatcttc cagatttcgt      4620
     taaagggaca caagttggcg gcacatcggc atcagcttaa aatggtgcac agacctagac      4680
     gttatggcaa agtcatgttc aacatgagca caaattcatc gaccaagaga cgaaggagtg      4740
     tctcagtcga agatgatttt tttggattcc aagaaaccgc cagagaagag accgaatcac      4800
     caccgaagaa aagatatcta cagatgcgta gtcctattct cacaagatcc aaagctagcg      4860
     caatccatga tgctgtcgaa gaaaataaat aaaatatatg atacaataat aagtgctaat      4920
     cgttgagaag aaacgaattc gaagttgttg aaattattga aacacacaca agtaagcttg      4980
     taatctgaaa taaattaaac aataaaatta tgtaagaatt ttctagaaag cgaagaat        5038
//
ID   Gypsy-330_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 24.03, Created)
DT   14-DEC-2018 (Rel. 24.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-330_;
KW   Gypsy-330_AA-I; Gypsy-330_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-235
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-235
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 19(3), 411-411 (2019).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 235 BP; 81 A; 27 C; 45 G; 82 T; 0 other;
     tgtaatgttc tgtcaaaagt ctttagagtg ctttcggtaa aatcgatatg tataagtctc        60
     caacgagatg aactgaataa agtagtttat tcgagcttga gccgtgatca agagcggagt       120
     caaatcttta agtgttttat tataaatcgc attatcacaa agaagtttaa tacaattaat       180
     aagtttattt agtctaagag gggattatta taagtgatat ttagtgaact ttaca            235
//
ID   Gypsy-331_AA-I repbase;    DNA;    INV; 4132 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.01, Created)
DT   14-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-331_;
KW   Gypsy-331_AA-I; Gypsy-331_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4132
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4132
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4132 BP; 1558 A; 594 C; 702 G; 1278 T; 0 other;
     tatcagaagt gggatatacc tcaatcattc ctgagccgtt ttccgtcaat tcgccatttc        60
     gttgctgagt aatcgtaaga agtcagatct caaaatgctc gaggatatcg gaacaaatct       120
     tccttctctg gcaggagaaa accaatctga tgcgataaat acaagaattt ggacgaattg       180
     ccgctacgga gattcaactg caaaccaaat ttcaagacta cgaaccgaag gggtgaaccg       240
     aattgagaat tcaagttact gcgtgaaatt ggacgatatc ggtgaatttc ttccaagttt       300
     tgcaggaaat gaagaagaaa atgtgaacaa tttcgttgaa agcgttgaac atgtaaggaa       360
     aattttcaac gttaatgaag aaataatgaa gctgatcgtt ttcaagaaat tacaaggaaa       420
     tgcccagaaa tggatgatgt cgcaagaaaa aattttcacc tcaaatttac cagaaatttt       480
     aaaccttttg aagataactt ttacgtcaac catgacaacg cttgaattac ggaagaaact       540
     tgaattacgt aaatggaaaa gccgtgaaac atttcaagaa tattatattt cgaaaaggat       600
     cctcgcttca ccattgaacc ttgaagagat cgagttaatt gaatacatta tcgaaggaat       660
     tccggataac aatctgaaaa attttgcgaa aatatcaaga tttaaatctg ttattgttct       720
     tcttcaagct ttttcaaaaa ttcgactcca atctaatgaa aatttcaaga caattagatg       780
     tttcaactgt agcttgaccg gtcatgttgc tgcccaatgt cgtgcatcga aaacttccaa       840
     tgataagatg ttcaaacctt ccaatctttc aaatcattca tcgcaagatc ttgtggagcc       900
     aaaaacgaag attggagctg taaacaattc gatagctgac aaaatggtag actctatgag       960
     taatggactg gtagatatac acttcacaaa ttttaacact gattttagag cattgttcga      1020
     cacaggtagt ccggtttgtc tgatacgcct tggaatagta gaaaaagaca aaataagcaa      1080
     atataatggt agtatttcat acaagggtat cggaggaacc agacttcata ttgtggggtg      1140
     tttcataact gatgttttaa ttcaaggttt aatttttaaa attgattttt tagtgattcc      1200
     cgactcagta atgcactcgt atgacgttat tattggtaga aatgttatta tgaaaccagg      1260
     aatgcgtaca ataatagaaa atggccacat aaagttattc aaaacaccag tatttgaaag      1320
     tgagcagatt ggaccagaga aaaggctaaa agagactgtg agtaccattg atgttcaaaa      1380
     aattttggaa aatacaggtg atattaataa ggatcatttg gaaagtttga aatatgtttt      1440
     aacaaaatac tattttgaat tcaatcgacc tttaaaacca cagatagatt atgagatgaa      1500
     aattgtttta aaatctggcg caccctttca tttcaaacca agaaaactct cacaaaatga      1560
     taaattaaaa gttgatttaa aaattaatga attacttatg tctggaatta taaaggaaag      1620
     tgattctcct ttcgcaagcc caattgtagt gatccctaag aaggataatg atataagact      1680
     ctgtgtagac tataggaagc ttaacaaaga cacttttcgc gataattatc cattaccctt      1740
     aatagaagat atttttgata aactgaaagg gaaacgctta ttttctattt tagatttaaa      1800
     atcaggattc caccaaatca aaataacttc agaatgcacg aaatatacat cgtttgtaac      1860
     gcataatggt caatatgaat atactcgagt tccatttgga ctatgcaatg ctccggcagt      1920
     ttttcaacga tttgttaaca aaatttttaa gacactcatt gaaaaaggaa aaattgtcgt      1980
     gtacatcgat gatattttga tagcctcgat gaatatggag gaacatttaa caacactcaa      2040
     agaagtactt gcgattttga gtaataattt attagaaatt aatttcgata aatgcaaatt      2100
     ttgttatgat gagattgaat acttaggata tattataaat gaatttggac gtagacccag      2160
     taaatctcat gttaaaactg tattggaatt tcctactcct aaaaatacaa aagatgtaca      2220
     aagatttcta ggtttgacaa gttattttcg taaatttatt caaaattttg ctcttatagc      2280
     aagaccactt tacaatctgc taaaaaaaga ttccgttttt gtgtttggag attcagaaaa      2340
     gaattcattt ttgaaactta gagataaact tgtgtctgcc ccaattttag cattatatga      2400
     ttcaaatgca gagacacagt tacattgtga tgccagttca ttcgggtttg gagcaatttt      2460
     attgcaaaag caaagtaacg gaaaatttca tccagttagc tttttcagca agaaaacgga      2520
     tgattttgaa gcaaaattac atagttttga attagaaaca cttgcagtag tacatgcaat      2580
     aaagcgattc catgtttatt tgtcaggttt aaaattcaaa gtatacaccg actgtaatgc      2640
     attggctcag actttggcta agaaagaaat aaatccaaaa ataagtcgat gggcattatt      2700
     tttagaaaat tacaactatt tgttagaatt cagagatgga atgaaaatgc gtcatgttga      2760
     tgctttaagt cgattatcaa tgagtgaaaa taaattgcta tcaacagata aaaatagtaa      2820
     tgtacgctct gttgaagcta tacacgtttt gaacaccgaa gatattgaaa gaaatgttat      2880
     tttggcccaa gagcaagatg aaaaattgaa aaatattaaa actcatttag aattccatac      2940
     atttccaaat tttgaattga aaaatggaat tttgtttaga aaggatagca ataaattatt      3000
     attagtgatt ccaaaagcaa tgatagataa tataatcaaa atttgtcatg atgatgtagg      3060
     tcatattgga atagaaaaaa caattataga agtaaaaaaa ttctactggt ttgcaaatat      3120
     gaaaaaaatt gttaagaaat atatcaataa ctgcttgagt tgcatatttt atagtccagc      3180
     tgatactaaa aaagaagggt ttctaaaatg tattgataaa ggtgaaactc catttcacac      3240
     tattcacatt gatcattatg gtccaataca gtcacgatca tcgaaaggat ttaaatttat      3300
     tttagtggta attgatgctt tcacaaaatt tgtaaaattg tacccaacaa aaactactaa      3360
     cactgaagaa gtgataaaaa gtttatccat atacatgaat cattatagta aaccattgcg      3420
     aataatttca gatagaggaa gttgttttac gtctgataaa tttaaacaat tttgtgcaga      3480
     taattttatt gagcatacta aaacagctgt ctatactcca gaagccaatg gacaagcaga      3540
     aagaattaat agaactctca cacctatgct agctaaactt ttgaatgata ctaataaaaa      3600
     ctgggatgtt ctactaccat atgtagaatt tgtttacaat aataccttca ataggtctat      3660
     caaaaatttc cctagtatac tattatttgg aaaacttcag aataatttta ataaaataga      3720
     gtacaattta gaaacattta ttcaaaacaa tcaatcggat tttgaaccta caaatttaga      3780
     agaagttaga aaagctgcta agcaaaatat tgaaaagctt caagtatata ataaacgcat      3840
     tgttgataaa aaaagaaaga gtgttcagaa ttataaagaa ggagattttg tggttataaa      3900
     agaagttgat aatagaaaac tttctagtaa atttaaaggt ccttatgtaa taaaaaaagt      3960
     attaccaaat gatcgttatt taatcacaga tatagacggg tttcaagttt cttgccttcc      4020
     atacagttca gtttgctcac caggaaatat gcgaaaatgg ttatcttcta ttaatatctc      4080
     ggataatgat aataataccg atgaagacat cgttgagtca ggatgaccga aa              4132
//
ID   Gypsy-331_AA-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.01, Created)
DT   14-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-331_;
KW   Gypsy-331_AA-I; Gypsy-331_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-164
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-164
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 112-112 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 164 BP; 62 A; 31 C; 28 G; 43 T; 0 other;
     tgtagtaatt aagtagagta agttacggca ttcctcacaa tagcacacta tacactaaac        60
     atagtagcca tcgacataga gtattgactg acgtaggaag gaataagatt attctgtaat       120
     aaaccatcaa acagataaga cgcttcatta ttctgcgtac caca                        164
//
ID   Gypsy-332_AA-I repbase;    DNA;    INV; 5173 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.01, Created)
DT   14-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-332_;
KW   Gypsy-332_AA-I; Gypsy-332_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5173
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5173
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5173 BP; 1673 A; 889 C; 1156 G; 1455 T; 0 other;
     actggcgacg aggaaaacga gaactcaaac agaaatttgc catttctagt gtgagtttat        60
     gtaagtattg attaaacgta agtagagttt tctttgaagt tgaatactag aagaaacttg       120
     ggcttgggca gacggttact cgacggtcag attcttggaa aagactggag tactgttgag       180
     caaatgtgct acattatgaa cattgtataa ttgtgaaaaa aataagtatt gattaattat       240
     ccacgtgatt attataccat tgtgttctct ttgtttcaac agcctttttc aatagtacgc       300
     cattgttgct acgccacatc aatagccgat tgtctctgat aaccttcagc agcacgggga       360
     ggtcgtcgca atcggtggat tatccattgt cccatcgcgc cggcgagtat cgctttggcg       420
     gttaagttac tgcagatcgt tagtggcgtg catgcttgta gataccgcaa ggcgggttga       480
     gctgcgtgta ggcaagttgg caagcaatcg aagtgaacaa gtggtagtgt gcatcgagta       540
     catcgcgtcc aacacggtgg tctccagaat cgagcgagaa tccaacacat cagcgtaggt       600
     agacgattgt cgatcgttgt agcctgctgc gatcacgttt tgcatgaact ggtcgttaag       660
     gttgctgtag cagacattag tgcatgtgga agtgagtgca tgagagcggg aaaagtattc       720
     ggagagcagt agtgaacaac gagcatctgg tgagaagagc gacaaccgag ctacaaatat       780
     caggtgagag gagagtgacc gaacactgag catcgagtga gcagcgagaa cactgagtat       840
     caattgagca gcgagaactt tggacgctga gtcgacagcg agaagtgaag agaggtcacc       900
     tgacggaggt tagtgaggtt gtacggtgag aaagcctatt gaaaaaccgt aagtaaatct       960
     tgaccaattt ttctgttgta ggaaaataaa tttacacaat gacgactacc ggtcttatag      1020
     gctctctaga tcattaccat cctggtagat ctttcaccaa ttacgttgaa cggtttgaga      1080
     ttctctgccg tcttaataaa gtaaaagacg aagagaaaca atcttggttc atttcgctgg      1140
     gtggtgatga attgtttgac gaaattaaat tgcttttccc taagcaggat gtgaataatc      1200
     tcgcttatga tgatattgtt aaaaagctca agggccgttt tgataaaacg gaacctgcat      1260
     tgatgtaccg ctacaaattc gctaatcgtt tccaaggtcc aaatgagaca accgaaaatt      1320
     ttgtcttggc aatcaatttg ctggcagaaa actgcaattt taaagaattt aaaaatgagg      1380
     caataaggga cagattgatt tttggattga aggataaaga gctccaacgg aagttgcttt      1440
     cggaggacga tattgagctg aaagaggttg aaaaattgat cattagtagt gagctagcag      1500
     gacagcgttt taagtatgtt gaaagttcca atcccagtgc tagtgtcatg tcaattaaaa      1560
     atcgattagg taacagaaga agcgatgatt acgatcagca tcaaccaggc tattcaggtc      1620
     gatatcgttc gagaagcagg agtggtgatc gaggttacgc aaattatcac agttacaaca      1680
     ggcaaagtag aagtcgagat cgtagaaata gtcaggagag gtttgaccgt aatacacaca      1740
     gcaacgcggt ctgtaacttt tgcaagcgta gaggtcacat aaggaagaat tgttatgctt      1800
     tacaaaacaa aagtgcagtc aaatttgtta aggaagtaga cgtggtagaa tcagagccgc      1860
     tcagtaaatt tgatcgcatg aagctgcgtg attctagtgc agagtcagac ataagctgta      1920
     tgaaaatttc ttgcgtgaac aacattggtg agccatgctt agtggaagta acggttgaaa      1980
     acaaaacact cactatggag atcgacactg gctcagcagt cgcagtaatt agtgaatacc      2040
     tttataagaa gcttttccaa cacattccca tttcgacctg taagaaaaga ttggttgtgg      2100
     tgaatggtgc gaagttgtca gttgttggac aaatttctgt aaaggtgagc attaatgagc      2160
     tggaatgcca aggtgcgttg atcgtgctga aaagtgagag agatttcatt ccattacttg      2220
     gaagggattg gatggaaatt ttctatccag attggaaaaa tctcttcatc aacaacattg      2280
     agcaaagcaa caagtcacaa caggccttag gtactattaa aaccaaatat tctaaaattt      2340
     tcgataagga tttttctgat cccattgtag gatatgaggc tgagttgata gttaagcccg      2400
     atcaaccaat ctttaaacgc gcctaccagg ttccctataa aatcaaagac aagttccttg      2460
     gtcatctggt tatgctggaa caacaaggcg taattactcc ggtgaaggca agcgagtggg      2520
     cttcgcctgt aatagccgtt tggaaaaaag acaacgagat ccgaatggta atagattgta      2580
     aagtttctct taacaaaatt ctaattccaa atgtttatcc tttgccactc gctcaagaca      2640
     tcttcgctac attagcggga tgcaaagtgt tttgctcctt agacttagct ggagcttaca      2700
     ctcagctaaa actttctaag cgaagcagga aatatatggt cataaacaca gttaaaggtt      2760
     tatacaccta taaccgcctg cctcaaggag cttcctcgag tgcagcactg tttcaacagg      2820
     ttatggacca aatacttggt ggaaatgaag gtgtttgttg ctatcttgac gatgtgctaa      2880
     ttgccggaaa atcttttgag gactgttaca acaaattatt gcttgtttta gatcggcttt      2940
     cagaagcaaa tataagcgta aatttcaaaa agtgtaagtt ttttgtggag tccttacagt      3000
     tcttagggca tattgtttca aacgatggac tacgtccttc accagataaa cttttaacga      3060
     tagctaatgc taaaacaccg caaaacgtaa cggagctgaa agcttactta ggtctaataa      3120
     attactacaa taaatttgtg ccaaatatgg caaccaattt aagatgtttg tacaaccttc      3180
     ttaagaaaaa tgctcgtttt gaatggactg accaatgcga tgaagctttc gacgtgagta      3240
     aaaagtgttt ggtgaacgct aatttgcttc aattttatga tcccacctta ccattggtag      3300
     ttgtaacaga tgcatcttca tacggcctag gaggtgtatt ggcgcaagtt gttaacggaa      3360
     tagaaaaacc agtatgcttc acttcctttt cccttagtcc tgcccaaaaa aactacccta      3420
     tacttcatct tgaagcattg gccatggttt gtgtgattaa gaagttccac aaatatctat      3480
     tcggtcaaaa attcaaaata gttacagatc ataagccttt attggggata tttggtaagg      3540
     agggaaagca atccatttgt gtaaccaggt tacaacgtta tattatagaa ttatcaattt      3600
     acaattttga aattgagtac cgacctggtt ccagaatggg caatgcggat ttttgtagta      3660
     ggtttccgtt agatcaaaaa gttccaagtt ccttaaacta tgaggccatt aatagcttga      3720
     atttttccaa cgatttacct ttggactata atctcatatc aaaagaaacc agtgaagatg      3780
     aatatttgaa agaaatcata agatttgtta atactggttg gcctaaatcc gtgccaaata      3840
     agttcaagga tttttatgct caaagagaaa agctggaagt tgttggacaa atactgctat      3900
     tacaggatag ggtggtcatc ccagaaaaac taaaggatgg aatttttaaa cttctacata      3960
     tcaatcacgg tggaatcgtg aagatgaagc agcttgccag gcgaactgtc ttctggtcaa      4020
     aaatgaataa ggatatagaa gaatttgtta aatgttgtaa tgtttgcgct caaatgggaa      4080
     ttattcctaa accaaaaacc aaagaatcgt ggattcctac tactcgcccg tttagtagga      4140
     tacacgctga ctttttccat tttgaaaaca aaacattttt attgattatt gacagctatt      4200
     ctaaatggct agaggtagag ctattacggt acggtactac agcaaaaata gttaatagga      4260
     aatttgcttc cttttttgct cgatatgggt tacctgatgt tgttgtaacc gatggcggtc      4320
     caccatttaa ttcccaggaa tttgtgaatt tcttagaaaa gcagtgcatc aaagtactca      4380
     aaagtccgcc atacaaccca gcttccaatg gtcaagctga aaggatggtg agagttgtga      4440
     aggatgtttt taagaaattt ttacttgatg atcaaacaag atctttgaca atcgaggatc      4500
     gactagattt atttctgatt aactatagga acagctgtag tggaccagaa gggaaatttc      4560
     cttcagaaaa ggtcctgtgt tttaaaccaa aaatgcttat ggatttaata aatccaaaca      4620
     atacctataa gcaacatttg aagaaaacgc cagaaagaaa agaagttgtt ttggaagaaa      4680
     taactgctcc tgatggactt gacgagttgg tttcagggga taaactatat tataaaaata      4740
     ataagcttgt tgactttcct aaatggttag aggcaaaatt aatcaaaaaa gtttctaaaa      4800
     atgtttttca gattgcgcta ggaacgcacg ttctgacagc acaccgaagt caattaaaga      4860
     agatgaacca tccaaatcga cgcagcagag tggtcttcca agtgaccaat gatcgtaagc      4920
     gtcgacgtaa atccgtcgaa gaagaagagg atttcttggg tttcccacta cgaactgagt      4980
     cagacgaagg tcctgcgaag agaagagtga tttcaacaag aagtcctatc gaaacaaggt      5040
     ctaggaaaaa gctaggtgca tctcgcactg gaagcgaata gaaaaagttc aatgcagtta      5100
     tgaaattatt gaaatcgaaa tattaagttg tattaattag aggattaatc caatttctga      5160
     aaaagggaag aac                                                         5173
//
ID   Gypsy-332_AA-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 25.01, Created)
DT   14-DEC-2018 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-332_;
KW   Gypsy-332_AA-I; Gypsy-332_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-297
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-297
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 194-194 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 297 BP; 92 A; 53 C; 69 G; 83 T; 0 other;
     tgttatatct gttgttttta gacgagatga acaaatgaat tcaatgaaca tcgttcggta        60
     aaaccgatat catgagcggt tcgctcgtcc gaggaatgat taataaagat cagtcgaata       120
     ctagctgtga gacgatacag agtcaaatct aaattagctg tgctataccc tattaaaaga       180
     aagaagttac ggttacgtct agtgtgtccg ccctttagtc aagtgtccgc tggagtctaa       240
     gtgtgtctgc cgaaacatag aaggcctcgc cttggaacag taaggaagga tttatca          297
//
ID   Gypsy-333_AA-I repbase;    DNA;    INV; 6562 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-333_;
KW   Gypsy-333_AA-I; Gypsy-333_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6562
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6562
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6562 BP; 2029 A; 1345 C; 1455 G; 1733 T; 0 other;
     ttttggcgcc caacaaaaaa taatttcctt ttttgttgag tttagcgcgg gagggaaacg        60
     atagtccgac aatagtttac gccggtgttt ctggtaattg gctccaatcg gcaggtgttg       120
     aataacttat gtgaaacaat tttcacaaaa gtttcttgtg aataggattt taaccaattg       180
     ttcgacaaac gttcttggtg acacgtgcgt ccatactgtc aaccaatcgt agatatttcc       240
     aagtaaatca ctactatcgt ccaattacca ttgaaagtcg caaagcgatt ggattcttct       300
     aggataacaa attattgagc actatacaac gtcgtgagaa cggaatttat tttcgttggc       360
     attctgatta ggtaacttta acaaattttg ttctggaaac agtaagaaca acagctatgg       420
     atcaattcat gctgcaatac ttttcgatga acgttgcgca tctgcatgac gaggagctgg       480
     cacacgagct agctattcgt agaatcgata cccataatga accacgctct gttttggaac       540
     gaaaatgtag ggctgatctg aaaagagaag catcgcaaaa atcatcagaa attgagtatg       600
     agataacttg gacgactatt atcgaagagt tggaaagatg tgacaaacaa gtacaggaaa       660
     ttaaacagat actggaaagt agaacgtaca aaaaggctcc cgatcagtta aacaaatcgc       720
     gtttattaca ttacctgttt cgtttgctac gagtgaaggc tcacaccaaa gaggaatcag       780
     agcttaactc aatctcagaa atggcaggag agtgtgtgag actattgaat actttctatt       840
     cgatcgcctc tccttatcct gaaatacgaa gggcagagat gggcagagtg aacgatatgg       900
     taaataggtt acgggatgaa ttttctgaag acaatggtgc taaatccact aattctcaaa       960
     aattgacaaa acccgaggtt cagaaggaca atgaagatgg gggtaacaat aatcaactcg      1020
     aaggattatt tgctctccca gatgatgatg aggttgaaaa attaagtgaa gctgccggtg      1080
     gtcaacccac tgaagaggtg gaaatcctca gagctgaaaa ctcacaattg aaatccatcc      1140
     tagatcagtt gctgactaga atggaatcgt tggaaacaca actccattcc tctgacaagt      1200
     cacaccagca gtcgaagaac actaccagcg ttggggaacc ccggaatttg ggggacacag      1260
     atgactccga cccggtggtt gcaccaaagc caaaattttc gtaccacgat ttcatgaact      1320
     ggttagccag ggatcagaat ctgatcgaaa atatcacaaa caagaaccca ctgacacaca      1380
     atgatccaag aagtaacgta ccttcacgtg gtttgccaaa tacgggtgca cctgctaaca      1440
     cggttcaggt cgctcgagaa atttgcggtc aacgtttacc aattcacaaa tggaaactct      1500
     cctacgacgg tgccgataat ggtcgacggc tgattgaatt tctccgtgaa gttgaattca      1560
     acgctcgatc agaagggttt aaccatcaag aactgtacaa ttcggcttac catctactga      1620
     tcggtaaagc gcgaacctgg tatatggagg ttaacgccaa caatgagctc gacacttgga      1680
     atcaactagt ggctgagctg aaacgagagt ttctgccacc cgatctcgac taccaatatg      1740
     agagacaggc tcacctgaga aaacagggaa tgagagaacg ttttcaagac tactacttgg      1800
     aaatgactcg aattttccga aatatgactg ttcctcttga cgaagcgaag cgatttcaaa      1860
     ttctcttccg aaacctccgc tctgaataca agagtgcgat gttagcagcg aatatcgatt      1920
     cgatcgcgaa aatgagagag ttcgggaaga actttgacgc catcaactgg caatggtttt      1980
     cccgagctga taaagattca ggtaggggat atagagcgag cgaaaggcag gtcaatgagt      2040
     taggggagag gagaaggcta ctgccgaata acaatcgtcc gtggaacaaa gggaataatg      2100
     actcgaatca ggggaagaaa gagttcccta actcgagtaa acatcaacag tacaagaacc      2160
     catcgaacaa aactgagaaa tccgatgaac aaactgcgaa ttcaaaaata tcggaacgga      2220
     aacccgaaca gactagtaag caagactatc aaaaaccgac cactagtaag agtcttagcc      2280
     cactagaaaa gattttgaaa gcctacgttc cggtgaagaa agggacgtgc ttcaactgtc      2340
     ataactttgg acacaacatt tcccagtgta agctagaaaa gcaaactttc tgcgacgttt      2400
     gtgggtttcc tggcttcata caacaagatt gtccttactg tacatcaaaa aacgtagaca      2460
     agactgctca gtgaggcaca gtggtctaga aactacaagt cctcaaaatg ataatgtaaa      2520
     ctcaattaat tctattctca aacaactagg ttatcactct gtggctgttg gaacccagtg      2580
     tgaggaggta aatacaattt ttctccaccc acatggggat aacagacctt tcgtgagaat      2640
     tgagttgttg ggaataaaac tagttgccct attagacagt gggacaaacc gaaatatatt      2700
     aggaagggga ttagaacgtc tgatggcgaa gcttaatcta cctcactcac catctgactt      2760
     gacattgatc actgctgaag gacatccagt ttcagttgtt ggagaaattg aggttccagt      2820
     tttgtttaac ggggccacca aaatcgttcc ttttgttgtt gcgccttcct tgaagcggca      2880
     atgctatctg gggatgtcat tttgggatca atttggcatt tacccttctc tgagagactc      2940
     gtttatcgaa acgttggacg actcggaaga gatgatcgga gatgagattt tgttaggacc      3000
     cgaagaacaa aacgaacttg atgaagtcaa aacgcttttc atggtacccg aaccgggtaa      3060
     cattggatgt accgaacttc tcacacatac catcgagctt aaagataagt gtcgtgagct      3120
     accaccgatt cgaaagaacc cgtatccgtg gagccctgag atacagcgaa aaattcacaa      3180
     ggcacttgac aacatgattc gagatgatat tgttgagaga tctagctcag actggtcaca      3240
     accagtgata ccagttgcca agcgtgatag tgaggccgtc cgtctctgtc tagacgcaag      3300
     gaaattgaat gagcgcacaa aacgtgacgc gtacccactt cctcatcaga ctcgcatact      3360
     aagtcgtctg gggtcattca agtacctcac gaccatagat ttgagtcaag cgtttttgca      3420
     aatcccacta aatcaagagt cccgcctgta cacagcattt tccatcccgg gtagagggct      3480
     gtatcagttt aagcgactac cgtttgggct tgccaatagt ccggcaacgc tcagcaaact      3540
     gatggatcgg gttttaggat ttggggaact ggagcccaac atatttgtct atttggatga      3600
     tatagttgtg gcgtccagaa cctttaaaga acacatccat catttgaaag agttggctaa      3660
     aaggctgaaa gaggcaaatc tgcgaataaa cctcacgaaa tcaaaatttt gtgtcccgga      3720
     attgccatac ttgggctata tcctatccaa agacggtttg aggcccaatc cagatcgcgt      3780
     acacgcgatc gtcgcgtatg aggtgccgaa atccgtacgt gcactccgcc gattcctcgg      3840
     tatggtaaat tattaccgac ggttcattga ccagtttagt gcactaaccg ttcctttgac      3900
     gaatttactc aaaaacaagc caaagaaaat tgagtggagc ccagaagccg agctggcatt      3960
     cagggccatc aaagaaaaac ttattagtgc gccagttatg gcgaatccag attttagcct      4020
     ccccttcgtc gtacaaactg atgcgagcga ccatgcgatc gctggggtgc taacccaaac      4080
     catagaggga gaagagaagg taatagcgta tcattcagaa aagctcaagg gggccgaact      4140
     gagttatcac gcagctgaaa aagagggatt ggcagccctt agatgcatcg ataaatttcg      4200
     atgctacatc gaagggaccc aatttactct ggtgacggat tcatcagcat tgaccttcat      4260
     tatgcgctcg aaatggcgaa catcctctcg tctctcacgg tggagtatcg aattacagca      4320
     gtacgatatg gtactcaaac accgcaaagg tcgagaaaat gtggtgtccg acgcactgtc      4380
     gaggtcaatg gaaatttctg aaattgtacc aaaaaccgat tggtactcac ggttgtttgc      4440
     ttcggttcaa gccgaacctg aaaagtacat tgactttaga attgaaggca aaaatcttta      4500
     caaatatgtt tcatcacaaa ctgatgtttt agattatgct ttcgaatgga agttgtgcat      4560
     tccagagtcc atgcgaatgg aaatacttgc caaagaacat gatgaatctt tccatgttgg      4620
     cttcgaaaag accattgaca aaatcaaaaa acgctactat tggccgcgga tgtcagctga      4680
     agttaaacgc tatgtggcaa actacgagac atgcaagcga attaaacatt ctactacttc      4740
     cgtgtgccct gaaatgggaa accaacgagt aacaaccaag ccattccaaa tactcacgat      4800
     ggactacata cagtctcttc caaggagttc tcgaggcaat agtcatctgc tagtcctgat      4860
     ggacgtattt tccaaatatt gtctcctcac tcctgtgcga aagatttccg caagtagtgt      4920
     ctgtgaaatt ttggaacagc aatggttccg acgtctatca gttccccaat acataatatc      4980
     ggacaatgcg acaacctttc actcaaagga gttccaagag cttttatcca aatacgagat      5040
     tcagcattgg gctagtgcta ggcatcgcag ccaagcgaat cctacggagc ggctaaaccg      5100
     tacgattaat gcgatgattc ggagctatgt acgggacaat cagaagttat gggacaccaa      5160
     gatctccgaa gtggagttcg tcctcaacaa cactatccat gccactacta aattcacacc      5220
     tttcagggtg atctttggcc acgagatcgt gaccaaaggc tctgagcacc gatgttcgga      5280
     ttcggtcgaa ctctcagaag aagagagatt ggaacgaatg cgtttcgtga gcaaagagat      5340
     ctacgaaaag gttattgcca atcttcgaaa aggtcacgag agcacaaaga agaagtatga      5400
     tcttcggcac aaaagatatt ctccgacttt cgacattggg caaaaagtgt acaaacgcac      5460
     attccgccag tcttccgcca gcgatcattt caactcgaag ctcggcgaag tgtatgagcc      5520
     ctgtatcgtt gtggcacgaa aaggctcatg ttcatatgag gtcagtgacc tcaacggaaa      5580
     gagtttaggt attttttcgg cgggcgattt aagagcataa tgctcgaata tgtatgtttg      5640
     ttccttgtgt tggaagcagt gaatctgtgg ataagatgtt gtggaaatgt gatcgtcgtc      5700
     aattacgtat ttgaggatcc aatagaccat cttttccgag gcgaaccgtt gctgaaaaca      5760
     ggattggaat acagttacct tagttacctt aggatgattt gaaatttcat aactgataag      5820
     gttagtaaat gttgcgaact ataattgttt gaaggtaccg aaacagaaaa aaaaaatgaa      5880
     tggttccggg ttatcctatt gttagttgta cttaagatcg ttaattgaaa tttgatctgt      5940
     ataacacata tgctatggct acccaattgg attttgcttt tcctctactt acctgcagga      6000
     gtacgaggac tgaaaatatt tatcccacta acaagtggct tccttattat tgttctctga      6060
     aatagatgtt agttggttgt tacgttattt ccatgtcaga cgatttcacc gaatttgatt      6120
     tgaattccgt tatcaaatta tttagttcac gttgacgaaa gacttaaaaa gtgatcgtgg      6180
     gcccacatat atataaaaaa atgatgtaat gcgtccttgt taccggcaga aatgtcataa      6240
     tttgctaacc ctattcgaat ccaattcgtg atgattaact gtctagaaat cttagtttgt      6300
     tctgttaaat aaatatggat tgtttgaact atttatgatt tgttacgtta ttggatcatg      6360
     tatcccaaga ttgtttataa gatgtcgtta atttgttaaa attttcttta aaattacctt      6420
     ttgcaatttt gttctacata gtttattcac catagcctgg ttttggtaca ggtgcggtat      6480
     ggcgagaatc gatctttcgt ttaaaaaaaa aatattagcc ttgttatact tcgctaatat      6540
     ttttccccaa gcggtgcggt ag                                               6562
//
ID   Gypsy-333_AA-LTR repbase;    DNA;    INV; 1070 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-333_;
KW   Gypsy-333_AA-I; Gypsy-333_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1070
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1070
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 195-195 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1070 BP; 338 A; 245 C; 245 G; 242 T; 0 other;
     tgtgaccagt cgttttactc cgctcactac ttgtgtgata tcaaggatct tatgtactaa        60
     attattcgca tatattgtaa gaggacaaac cacacgtaaa cagcttagct agtagggaaa       120
     tattatagta taaaaattaa aaaatcatgc aaactatctt taaaacaaaa taaaaaagaa       180
     cgagctaaaa tctacataac agcaacagtt tgataaaaaa aaaacagcta gataggctga       240
     tggcataacg tgcaaattaa atacacacat aggcattgta tacagcaggc gacactactc       300
     aaaattccag caccaaccaa tagtgtcaac gggactgaat ttcgttggta gcaaaacttc       360
     tccgtttggg aggttccggg tggattacac tcatactgcc ttaaaaggaa cgccttcgaa       420
     tgggcggtcg aaggtcccag agccagcgaa tgaaaaccac tcgttcacta agttggagaa       480
     cacgaagcaa gttagaagtg tctaaattaa caagtttcta gtgacaagtc caagaagcct       540
     atccacgttt ccgataggaa tattaccggt ggtgaccgat attcccggtg gttgataact       600
     gcaccggttt gcccatccaa ggttggacat tgctcgtccg gatagccgtt cgatacccca       660
     catcaagagt caagggagga ggcggtgaaa ggcactacga gctcgatccg agtttccggg       720
     aggccaggac cgaccaagca ttccgaatag gcagattaag accatcccga gttcctaagt       780
     agacgggcag gaggccgtgc tacccagcag aacttcaacc ggagcgcagc gtacgggccc       840
     caacggaacc acacatccac acacacacac accgtgagta aactgttctt ggtaggttgt       900
     agttagggcg ttagggactg tagggcaact gaacaataaa cgtgccatca ctgtagaaca       960
     ctgtggtttt ccctcttatc cgcgtctctt caacggcaag gaattgagcc gaccctaagt      1020
     attccttgag tttcatgcga gctagcgggc cgtgtaaaaa gtcagttaca                 1070
//
ID   Gypsy-334_AA-I repbase;    DNA;    INV; 6390 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-334_;
KW   Gypsy-334_AA-I; Gypsy-334_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6390
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6390
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 265-265 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1943..2938
FT                 /product="Gypsy-334_AA-I_1p"
FT                 /translation="MDFFLLVRCSHSLQITHMVDYGAIRMKQWLLELTMVV
FT                 EKERKIFICFFFLNRNSMANEEMIVQTMSFFSPASYNLPMFKFSHLPATEV
FT                 RSAWTSWIRWFENVMLATNILDSHSRKAQMLAMGGMELQSVFYGIPGADID
FT                 GSDGNDPYVVAKEKLSAHFAPKQHSSFERFQFWTMTQENDEPIEKFMLRVQ
FT                 QKAEKCSFGQTELECRQTAIIDKIIQNASDDLRRKLLEQEKLTLDICTKIV
FT                 NAHQSVNYQAAQMNPKSKPATDINRLIAHKARTPYYKNSGIPAYKERCHRC
FT                 GRFRHSMSEKCPAADKKCHRCGNXGHFQSMCKAPARNVRN"
FT   CDS           3106..6270
FT                 /product="Gypsy-334_AA-I_2p"
FT                 /translation="MNVEMTNENKDTKEFSVYKITNENDELLKCRVGEVAI
FT                 EMLIDSGSTYNLIDDKTWEYMKLNKAVYFSERYDXSKKFMAYGRIPLELLT
FT                 VFDAVIEVPDEDDVISTTTTFYVIQGGQQALLGKNTARKLGLLRVGLPSSF
FT                 KEGVNQIKQVDAFPKIKDFQLVLPIDKNVTPVIQPLRRCPVPLLEQVKSKL
FT                 DELLEMGIIERVEKPSPWVSPLVPILKDNGELRLCIDMRRANQAIQRLNHP
FT                 LPVFENILPNFSGAKFFTTLDIKQAFHQVELAKESREITTFVTNWGLYRYT
FT                 RLLFGVNYAPEFFQHLMESILSDCSNTVVFIDDIMIWGASEKEHDEAVRKT
FT                 LSVLKEHGIMLNMQKCKFKQQETTFLGHKFSEKGVLPADSKVRSIMQFRPP
FT                 QNKEELRSFLGLVTYVAKFIPNLATENHPLRELLKDAVPFEWSSVHQRSFE
FT                 VLKQHMSNLQNLGYFDPKDKTMLITDASGVGLGAVLLQLKGNKPRVISYAS
FT                 RSLSETEKRYPPIEKEALGIVWGVERFKDYLLGIQFIIETDHRPLEVLFTV
FT                 KSRPTARIERWMLRLQSFNFTVVYKKGSANIADPLSRMASHVEDKWQEESE
FT                 VYIRRLATTTLAMLVDDSTGETFDDETEIFIRSIQETAAIDISEVVQATET
FT                 DKEMQALKHAVMEETWTSELLKPYAAFRQELSFVNGLIMRGSKLVIPSALR
FT                 YRMLVLAHEGHPGQTIMKRRLRDRCWWPKMDAEVSKSCDSCEGCRLVQIAD
FT                 PPEPMQRRALPDRPWLDIAIDFLGPLPTGEHILVVIDYFSRYLCLEIMTSI
FT                 TAKETIKRLMKIFSLWGLPRTITLDNAKQFVSTEFKEFCDTKGIHLNHTSP
FT                 YWPQANGEVERQNRSLLKRLKIANALYGDWKVEMNQYLEMYNNTSHSTTGK
FT                 APSELLQNRKLRFKFPDPEDLSTAVSSTDYADKDAAQKFKGKIEEDVRRKA
FT                 KCSNIKAGDLVLMKNLHPTNKLSTSFLPEKFVVEERNGSKVRVRSMDNGKS
FT                 YERNIAHLKQVSTYSEKNKSDEAPDNEAEPLEDRRYSERARKPPVRYEA"
XX
SQ   Sequence 6390 BP; 2077 A; 1187 C; 1448 G; 1673 T; 5 other;
     gtggcgacga ggttaaaccg gaaaaaagcg cgtcaagttt taagcaaaag tgtattatcg        60
     aagtgataga agttattgat aaaggcaggt aatgaatcgg gaaaagtagt ctgcattgag       120
     aaaataagcc gaaaagtttc attctggtgc gggaaaaaga tcacgctgta gtccgccatt       180
     tttttttgca tattcgaaag tgagatgagc gaaaaaaagg ttgaccttca aaagaagaac       240
     gtgcttgcgt tgctgttggg ggaaaaaggt ggcatggagt gatagtgatt tttggtaatt       300
     cgttttcaca aaatcgtacc gagctgatgg acgaaagaag aattagagca ccagtgatcg       360
     gggaaataat tctagtgtga ggtgatgttg agaaaaaaaa agaacagggg ttgatgatga       420
     atactgaccg tgtgcgtgct taagtgtggt tggagatgca tgagaggcat aatatggaaa       480
     aaaaaatctg gctatgcatg aattgtgtgg agcaatggtg aaagaaaaag aaaaatgtct       540
     cggtgtgggt gatccctaat gaatgagaca ccacttggca gagtgtgaat gaaagaagtg       600
     atggaaaaaa aacaactcca acgtgtgtgt atacgaatgg agaattaaaa cgaaacttgt       660
     attcggtttg aaaaaaaaag aaagggatgt tagtgttagt ggagccgtac tgattgataa       720
     atgcggcaca gaatcgtcta ctgagtgctg actgaatgac ggccacaatc atcgcacatc       780
     taactgatgg tgggctgcat cttgcagtmt gaatgacggt aattagataa tgatcaggga       840
     tcagaagagg tatgtaaaaa aaaaaaaaat gatctatgct caaacaggaa aactgcacaa       900
     ttccactgat ttttttttta ccgccgctct tgtgcagcta gcagcatata caatcagaaa       960
     aatgtactga atgatttcaa acagtagtat ttattttatt atttatcact gcgagtgttt      1020
     cgaatgttca aagagaacag taaatttctc acggcgtaat cattcaccca ccgcaattta      1080
     attgatkcgt caactactga tgctgagagc acagcagcac caccatccgc atggggcgca      1140
     cagttgcgtg ggacaatttt cgaggtttct cagccccccc catgcagtaa gaaatttgcg      1200
     agaggaagag agaatcagtg agagagcaaa gattcctaaa cgtttcccct cctgagctgc      1260
     tcgaaaaacg atgtctgttt aacccttcgg tcgtcgcgcg gttgaccacc accagaagca      1320
     ccgcgctgat gctgtgtatg aagagcaagt ttttacaccg gcgtggtaca aaatacaacc      1380
     gcgcgactac agtagtatta atctaggata ggatacgacg ttttaacttt atgatttgct      1440
     gtcttgttcc tgtgcactaa gatttctttt cgggtgtctc gtgtcttatc ctatcctagt      1500
     gcttaaacac tattagagtg ctaagtcaag caatagacat cagaagatga ctaatcgaga      1560
     gtgtcgttga cactgtgatt aaattcactg agagcgctca atgcgctgtg attaaattca      1620
     ctgagagcgt tcaatgcgct gtgattaaat tcactgtaat atggcttacg aagaaagagt      1680
     gctgtcggca ctgtgattaa attcactgag agcgtacaag acgctgtgat tgaattcact      1740
     gcttaacgaa taataaacaa gagtgtcgta ggcactgtga ttaaattcac tgagagtgta      1800
     cagtacgctg tgattaaatt cacttacaaa gagcatagat aaacgctttg aaggaactca      1860
     tcttgacaaa ctaaactaaa acatactgag aacgttttgt atgctgcgat tgaatctgct      1920
     agtaggttga agataaggaa atatggattt ttttttattg gttagatgct ctcattcatt      1980
     acaaattact catatggtgg attatggtgc aatcagaatg aaacaatggc ttctagaatt      2040
     gacaatggta gttgaaaaag aacggaaaat ttttatttgt tttttttttc ttaacaggaa      2100
     cagtatggct aacgaagaaa tgattgttca aaccatgtct ttcttcagcc cagcgtcgta      2160
     caatttgccg atgtttaaat tttctcattt accggcaacg gaagtgagaa gcgcttggac      2220
     atcgtggata agatggtttg aaaatgttat gttggcgacg aacatcttag atagccacag      2280
     ccgtaaagct cagatgcttg ctatgggcgg catggaattg cagtctgttt tttatggcat      2340
     tccaggggct gacattgacg gttcagatgg caatgatccc tatgttgtgg ctaaggaaaa      2400
     actttcggca cattttgctc cgaagcaaca ttctagcttc gaaagatttc agttttggac      2460
     tatgacgcaa gaaaatgacg aaccgattga aaaatttatg cttagagttc agcaaaaagc      2520
     ggaaaaatgc tcatttggac aaacggaact tgaatgtcgt caaacagcta tcattgacaa      2580
     aatcatccaa aatgcgtcgg atgatttacg tcgcaagcta ttggagcaag agaagttgac      2640
     tctagatatt tgtaccaaaa tcgtaaatgc gcatcaatca gtcaactacc aagccgctca      2700
     aatgaaccca aagtccaagc cagcaacaga tatcaaccgt ttgatcgcgc ataaagcaag      2760
     aacaccatat tacaagaact caggaatccc tgcctataaa gaaagatgtc atcgatgcgg      2820
     tcgtttccga cattcaatgt ctgaaaaatg cccggcggct gataagaagt gtcacaggtg      2880
     tggaaacatk ggtcattttc aatcaatgtg taaggctcca gcaaggaatg taaggaattg      2940
     aaatttttct tcatattagc aatttaagaa tggttgagtt atggattgtt ttttttgttt      3000
     cttctttttt tttcttctat ttaataaacc tggcagtctt ttaaacgtaa acattcacca      3060
     caacgctttt cccaaccatc ccaacataaa agatataaga gcgtgatgaa cgttgaaatg      3120
     accaatgaaa ataaggatac gaaagaattt tcagtataca aaatcactaa cgagaacgat      3180
     gagctactaa aatgtcgtgt cggggaagtc gcgatagaaa tgctcattga ttcaggatct      3240
     acgtacaatc tgatagacga taaaacatgg gagtacatga agttgaataa ggcggtctat      3300
     ttctcggaaa gatatgatag sagcaaaaag tttatggcgt atggacgaat acctttggaa      3360
     ctattaacgg ttttcgatgc cgttatcgaa gtccccgatg aagacgatgt catatccacc      3420
     acaacaacat tttatgtaat tcaaggtggt caacaagcgt tgttgggtaa aaacacggcc      3480
     cgsaaacttg gcttattacg agttgggcta ccaagttcct ttaaagaagg cgtgaaccag      3540
     atcaaacaag ttgatgcgtt tcccaaaatt aaagatttcc agctagtcct tcctattgat      3600
     aaaaatgtga ccccagtaat acagcccttg cggcgttgtc cagttccgtt gctggagcaa      3660
     gtaaaaagta agctagacga actactggaa atgggcataa ttgaacgagt ggaaaaacct      3720
     tcgccttggg tgtcaccatt ggttcctatt ttaaaggaca atggtgaact acgtctttgc      3780
     atagacatgc ggcgagccaa tcaagcaatt cagcgattaa accatccctt gccagtcttc      3840
     gagaacatcc ttccgaactt cagtggggca aagtttttta ctacgttgga catcaagcaa      3900
     gcattccacc aggtagaatt ggcaaaagag agtcgtgaaa taacaacatt tgtcaccaat      3960
     tggggtcttt atcgttacac aagactactt tttggtgtta attatgcccc tgaattcttc      4020
     cagcatctaa tggaaagcat actgtcggat tgctctaaca ctgttgtctt cattgacgat      4080
     atcatgatct ggggagcttc ggaaaaggaa cacgatgaag cagttcgaaa aacactatca      4140
     gttttgaaag aacatgggat catgttgaat atgcaaaaat gcaaattcaa acaacaagaa      4200
     acaacattcc tgggacacaa gttttcggaa aagggagttc ttccggctga ctcaaaagtt      4260
     cgatcaataa tgcagtttag accacctcag aacaaagaag agttaagaag tttcctcgga      4320
     cttgtaacct atgttgcaaa attcattcca aatcttgcga ctgaaaatca tcctctaagg      4380
     gagctactca aagacgcagt tcctttcgaa tggagttctg ttcatcagcg gtcgtttgaa      4440
     gtactgaagc agcacatgag taatcttcaa aatttgggct acttcgatcc caaagataaa      4500
     acaatgctga ttactgatgc atcgggggtt ggtctagggg cagtgctgct acagctgaag      4560
     ggcaataagc cacgcgtaat aagttatgcc tcaagaagcc tgtctgaaac ggaaaagcgc      4620
     tacccaccga ttgagaaaga ggcgttaggt atagtttggg gcgtagagag gttcaaggat      4680
     tatcttcttg gaattcaatt tattattgaa acagaccacc gaccactgga agttcttttc      4740
     actgttaagt cacgcccaac agctcgcata gaaaggtgga tgcttcgttt gcagtcattc      4800
     aactttacgg ttgtctacaa gaaagggtca gcaaacatcg ccgacccact ctctagaatg      4860
     gcctcacatg tagaagacaa atggcaagaa gaatcagaag tttacattcg tcgtttagcg      4920
     actacgacgt tagctatgct ggttgacgat tccacgggcg aaacatttga tgatgaaaca      4980
     gaaattttca ttcgaagtat acaagagacc gcggcaatcg acatctcgga ggttgttcaa      5040
     gctacagaaa cggataaaga aatgcaagcc cttaagcatg cagtaatgga agaaacctgg      5100
     acgtcagagc tgttgaaacc gtatgcagcg tttcgacagg aattatcttt tgtaaatgga      5160
     ctcataatgc gaggatctaa actagtaatt ccatcagcct tacgataccg aatgctagtt      5220
     ctagctcacg agggccatcc aggtcaaacc ataatgaagc gaaggttgag agatcgctgc      5280
     tggtggccta aaatggacgc tgaagtatca aaatcgtgcg atagttgcga aggatgtcga      5340
     ttggtacaaa tagccgaccc tccagaacca atgcaacgac gagcgttacc agacaggcct      5400
     tggctggaca ttgctataga ttttcttggc ccgttgccaa caggagaaca catcttggta      5460
     gtgatagatt acttcagcag gtacttatgt ttggagatca tgactagcat cacagcaaag      5520
     gagaccataa aacggctaat gaaaattttc agcttatggg ggctgccacg tacaatcacg      5580
     ctcgacaatg ctaagcagtt cgtctccact gagttcaaag agttctgtga cacgaaagga      5640
     atccatctga accatacgtc tccttattgg ccacaagcga atggagaagt ggaacgacaa      5700
     aatcggtcgc ttctcaagcg gttaaaaatt gctaatgcgc tttatggaga ctggaaagta      5760
     gaaatgaacc aatacctaga aatgtacaat aacacctcgc attcaacaac gggcaaagct      5820
     ccaagtgagc tgctccaaaa tcgaaaatta aggttcaaat ttccagatcc agaggatcta      5880
     agtacagctg tatcatcaac agactatgca gataaagatg cagcccaaaa atttaaagga      5940
     aagattgaag aagacgtaag aaggaaagct aaatgcagta acatcaaggc aggagatttg      6000
     gtgcttatga agaatctgca tccaacaaac aagctctcta ctagtttcct tccggagaaa      6060
     tttgtagtag aagaacggaa tgggtcaaag gtgcgcgttc gctcaatgga caatggaaaa      6120
     agttatgaaa gaaatatagc gcatctaaaa caggtttcca cttattctga gaagaataag      6180
     tctgatgaag ctcccgacaa cgaggccgaa cccctagaag atcgtcgata ctctgagcgt      6240
     gccaggaaac caccagtaag atatgaagct taggtaaggg cttcacaacg gaaatgtatt      6300
     tatttattac gagaggtgag agaaattcta atacattatg ttaaataaat taaacattgt      6360
     ttattgagct tttatataaa gaaaggggga                                       6390
//
ID   Gypsy-334_AA-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-334_;
KW   Gypsy-334_AA-I; Gypsy-334_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-150
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-150
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 196-196 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 150 BP; 43 A; 27 C; 39 G; 41 T; 0 other;
     tgtggtgatc tgtatcatga atgatatcac ttggtatggg aactaaggta gtatgtgtag        60
     gtcaactaac tagcgaacga actaactggc ttatagcggg gcactcgtca ttctgtcgta       120
     tagagctgaa tagatcggac gacatcacac                                        150
//
ID   Gypsy-335_AA-I repbase;    DNA;    INV; 5106 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-335_;
KW   Gypsy-335_AA-I; Gypsy-335_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5106
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5106
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5106 BP; 1629 A; 837 C; 1111 G; 1529 T; 0 other;
     gtggcgacga ggaaaagtgg tgattaaagt gtacagcaag ttgcgggtga attagctcaa        60
     acggaaaagc cagagtgagc aagcgtaagt acatgcagtt ttctcgaaat tagcacttcg       120
     agaaacttga agcagggcag acaggttttg tttgttaatt gttttgacga tagaaacaat       180
     tagagcacct gttgggtcaa aaatctatta gttttcaatt attaataaat atattaatat       240
     tgtgaaatat aggcatcggc attactttaa tcagcgtggt tttaacgcca tcttgttctc       300
     tattttttgt tcacagctat tggtttggcg ctcatatgtt gctaattttc tcctggtatt       360
     gttcaattat ctaattgaaa gtgaatcacc gacgctgaga gccgtcgtca agggagagtg       420
     agtgctttgt agattcccgt gctgttgtgt tgctgttgct gccctgccgc ctatatctgc       480
     tgttgctgtt gttgttgcgc ttatcttcca tccttgagag cgcgagacga tctagtgagt       540
     gctgtgatcc actttcagtg aaggcatcgg agtgattact cacttctcat cgtatcactt       600
     tctcgccaag ttttactgag ggtcacatcc ttgtcctgag aacgaactgg tacgaaggaa       660
     caccaaggca aggtagacga ttgcatgcta tcgttgaacc tcaactgaaa ccaatttcac       720
     acgtgtgcta gcaccacagg attacggtga gacaaatcta cagtgaccgt gagtaacgtg       780
     attgatttct ttttgctatc taattttgtt catacagttt cggatttgta atggctacac       840
     ctggtatgat tgggtcgatt gaccagtacc agaggcacaa atccttcaca cattatgtgg       900
     aacgatttga ggtgatgtgc aaattaaata aagttaatgc tgagacgaag caatcttggt       960
     tcatttccgt tagtggggac gaagtctttg aagagataaa acttattttt cctaaaaaag      1020
     atgtttgtga tattccgtac gacgaaatga tcaagaaatt gaaggctcgt ttcgacaagg      1080
     tggaaccagc tttgatgaat agatatgagt tttacaatcg tatacaaaaa ccaaatgaaa      1140
     cagcagaaaa tttcgttttg gcagtaaagt tgttagctga gaactgcaat tttagagagt      1200
     ttaaggatga agcaattcgc gatagactaa taattggact tcgagataaa gatctgagaa      1260
     aaaagcttct tatggatgat gacgtgaatc ttgaaactgt tgaaaaaacg ataataacta      1320
     gtgagaaggc tgaaagtaga gcaggccata tagaagattt tggtgaatca agtaaagtgt      1380
     taacagtgag agaacgtttg ggcagaagaa ataacgacta tgagcgcaga agggacaatg      1440
     aacgaccgcg atatcgtagt tggagccgcg accgtagtag aagcaatgat cgcaatagaa      1500
     gttttgagcg taacagaaat agggacgttg tatggaatag atattataaa gataatcgtc      1560
     caaaacaaat tcacggtagt gcagtttgca attactgcaa gaaaaaggga cacattcgta      1620
     gaaattgtta ccttttgcaa gggaacgcgc gtggcaagac cgtaaatttc gttgacgata      1680
     aacaggagat cgtagaacct actattactg ataagttcga tagcgcgtta atgattctag      1740
     cgatgaatcg gaaatcagtt gcatgatgat ttctagtgtt aacaaggtca gtgaaccatg      1800
     catagtaaat gttttaatac aggactgcca gatttcaatg gaaattgata caggatcagc      1860
     agtggctgtt attagcgaaa ttttatataa acgttttttc caccatattc aagtctctac      1920
     atgcaacagg aaattagttg ttgttaacgg ttccagtatt gcagtgttag gacagattta      1980
     tgttattgta gaattgaatg gcatgcgcac tgacaggaat ttaatcgtat tgaaaactgc      2040
     caaggatttc actcctcttt tgggtaggga ttggttgaaa gtattctacc caaactggaa      2100
     ggatggtttc atgcaattgc aacctgtgaa aagtataaat attgcagaaa catctgatca      2160
     aacgttaagt aagataaagc aaaaatatgc taaagtgttt gataaagatt ttactgaacc      2220
     tattgcagga tacgaagcgg atctcacctt caaatcttca cagccgattt ttaaaaaagc      2280
     ctatcaggtg ccgttcaaga taaaagacaa atttttgctt cacttggata tgcttgaaca      2340
     acaggaggtg attacaccta tacaagcgag tgaatgggcg tcaccagtca tagccgtggt      2400
     taaaaaagat ggagaaataa gaatagtaat cgactgcaaa gtatccttaa ataaaatctt      2460
     gataccaaac acttatcctc taccactcgc tgaggatatt tttgcttctt tggcaggctg      2520
     taaagttttt tgctcgcttg atttggccgg tgcatatact caattaaaac tctctcaacg      2580
     ttcgagaaaa tatgtagtta ttaatacggt taagggttta tacacctaca accgattacc      2640
     tcaaggtgct agttctagtg ctgctgtatt tcaaaaaatt atggaccagg gtctcaaagg      2700
     actagatggt gtatgttgct atttagatga cgtgcttata gcaggcaaga catttaagga      2760
     atgtttagac aaattggaga aagtcctagc tagactctcc agtgcaaaca tacatgtaaa      2820
     tttcaagaag tgtaaatttt ttgtatcctc cttacaatat ttaggacact taattacaaa      2880
     caatggttta ttgcctgctc cagacaaaat ctcaacaatt gagaaagcaa agactcctga      2940
     aaacgtgacc gaactaaaag cttatttggg attatttaat tactacaaca aatttgtgcc      3000
     taatgttgct gtgaagctga aatgtttata taatcttttg agaaaggacg taatttttaa      3060
     atggaccaaa aattgcgatg acgcttttaa agaaagtaaa aatagtctac tgaatgccaa      3120
     tttattggcc tactatgatc caaaaaagcc tttaatagtg attacagatg cttgcaatta      3180
     tggtctggga ggtgttttag ctcaattgga gggggaaact gaaagaccta tttgctttac      3240
     ctcattttcc ctgaacgttg ctcaacaaaa atacccgata ttgcacctag aggctttggc      3300
     cttagtatgt gtaataaaaa aatttcacaa atttctcttt ggtcaaaaat ttaaggtgtt      3360
     tacggatcat aaacccctaa taggtatttt tggtagagaa gggcgaaatt caatattcgt      3420
     cacaaggttg cagcgttaca taatggaact ctccatttat gactttggaa ttgaatatcg      3480
     ccctggttct aaattgggaa atgctgattt ttgtagccgc ttccctttag atcaaaggat      3540
     accaagtagt atagatgagg tacagataca taatttgaat tatttcaatg aattgcctat      3600
     agatttttcc ttagtttcga gagaaaccca atcggataag tttttggctg aaatagtaag      3660
     attcatgact tttggatggc caaacaaaat tgcagatcaa ttcaaggatt tttttgcaca      3720
     gaggtcaaaa ctggagttga tagatggtat actaatggtg gaggacaagg tagtaatccc      3780
     ttatgtatta agggatgcaa ttttgaaact actgcatgta aaccaccaag gaattgttaa      3840
     aatgaaaaca ttagctagga gaaccgttta ttggcttggt ttgtcttcag atattgaaga      3900
     ttttgttaaa tcatgtgaat cttgcattaa aatggaaata ataaaaaagc ctgacactac      3960
     cactacttgg atacctacca cacgaccgtt tagccgttta cacgccgatt tcttttattt      4020
     cgaaggaaat aattttctat taatcgttga cagctataca aaatggttgg aggttgaatg      4080
     gatgcgatcg gggactacgg ctagaattgt caataagaaa tttgcttctg tatttgctcg      4140
     tttcgggctt ccagacgttg tggtcaccga tggtggacca tcatttaact cttttgaatt      4200
     cataaatttc ctagaaaacc atggtattaa ggtacttaag agtcccccat accatccggc      4260
     tagtaacggt caagctgaaa ggatggtaag ggttgttaag gaggtcttca aaaagtttat      4320
     gctagatggc aaattgaagc cgctagatgt tgatgataag ctaagtttat ttctcattaa      4380
     ttatagaaat agttgctctg gagaagaaaa tttatttcct tccgagaaaa tgctctcttt      4440
     taaaccgaaa atgttgttgg atttgattaa tccaaaagca tcatatagac attatttgga      4500
     aaagcatacg gagagtaagc agtcttctag ccgagagtta gttaagggcg aggtacctca      4560
     aaatgtacct caagatagct tagataagct tgtggcaggg gataagttat actataaaaa      4620
     tgtcaacaaa tttcctagat ggttggaagc cacctttatt aagagagtgt ctttgaatgt      4680
     ttttcagatc ctagttggga agcataccac gaatgcgcac agacatcagc ttaaggttgc      4740
     gtacaagtct agtagaagca aatcggtgat cccgtgtcca atgcaaaacc tcactggaac      4800
     gaacaaacgt aggcggattt cgctggacga tgaagacgac ttcgaaagct tctcggaaag      4860
     tcaagatgaa aacgttcaat ccaggaggaa gaagattcga gcacgcgaaa gaagccctat      4920
     catcacgcga tcgaaggatg cacatcatag ctaggcgtga ctcgctggag ctagttatcg      4980
     tcatttgttc gatgtcgaag ttatggattc tgaagaatat tgaattattg aaaaagaagt      5040
     tttgcaatga attttgcttt caagtaattt tgtatgatgt taagttttta cttaagaggg      5100
     gagaat                                                                 5106
//
ID   Gypsy-335_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-335_;
KW   Gypsy-335_AA-I; Gypsy-335_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 197-197 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 227 BP; 72 A; 38 C; 38 G; 79 T; 0 other;
     tgtagtgacc accctatcca ttggatcagc ggtgtattcg atgttatcat atacaaagga        60
     catagtcctc ttcttaaaat aaaagaatgc tcattcgagc ttgagccgtt atagtagacg       120
     gagacgagat caatttacgg tgtttttctt acaaactata aagaaacata tttcggtcta       180
     tataagtgat ttatttattt tttaagtata ctagtcaaac cttttca                     227
//
ID   Gypsy-336_AA-I repbase;    DNA;    INV; 6788 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-336_;
KW   Gypsy-336_AA-I; Gypsy-336_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6788
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6788
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (10-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6788 BP; 2110 A; 1271 C; 1581 G; 1826 T; 0 other;
     tggcggagtc ggtgggtagg tattttatag cgtcttacgt gatatttggt gaaattaagt        60
     agtgaaattt gtcaaacagc gtgtaatgtg atttcagaat actcttgcat gagcgaatta       120
     atggatggaa aatcgtgata atatagtaat tgacatgtgt tggtcgaaaa tttgtaattc       180
     ccatgtactg ggtgaaaaca attgtttttt tttttctcgt aattcccaat tattgggtgg       240
     aaaatcgtga taatattgta atttcaacga gttggataaa catttgtttc gtaattccca       300
     tgtacgggtg gaagagaaaa aaaaaatcgt aattcccaat tattgggtgg aaaatcgtga       360
     taatagtaat ttccacgtag tggatgaata tttgttttcg taattcccat gtacagggta       420
     gaagagaata aaattcgtaa ttcccaatta ttgggtggaa aatcatgata atattgtaat       480
     ttccacgtag tggatgaaca ttcgtttcgt aattcccatg tacagggtgg aagagaataa       540
     aattcgtaat tcccaattat tgggtggaaa atcgtgataa tattgtaatt tctacgagtt       600
     ggataaacat tcgtttcgta attcccatgt acgggtggaa gagaaaaaaa atcataattc       660
     ccaattattg ggtggaaaat cgtgataata tagtaatttt cacgtagtgg atgaatattt       720
     gttttcgtaa ttcccatgta cagggtggaa gagaataaaa ttcgtaattc ccaattgttg       780
     ggtggaaaat cgtgataatg ttgtaatttc cacgtggtgg atgaatattt gttttcgtaa       840
     ttctcatgta ctaagtggaa gggaatataa ttcgtaattc ccgattgttg ggtgaaaaat       900
     cgtgacaact tcttaattcc cacgtgttgg gtggaaaata ttttaatctt gctatggtcg       960
     ttgtctccgt gattcccaat cactgggtat attgtcgtgg aaatttctaa tgtcttgagt      1020
     ggaaagtaca tatttgcgta atttccaatt attaggtgga aaatcgtgat aatattggga      1080
     tttctgcatg agtcctttcg taatcaaaat atttgagatt tttgtaattt tcctgcatga      1140
     cgatatgaat ggaaagtcat taattttttt ctcgattccc atgcaaaggg ataaaaatga      1200
     gggttttttt gaaattttcg taatccccat atgatgagtg gacaattgct tagtaaatac      1260
     taattaaaaa agtgctgatt ctcaaaacat tattcatttg atagcgtttt aaaacgagtg      1320
     gtataacggt gcccttcatt gttttcagaa aatcagccaa aaaagaagac taaacttctg      1380
     gaaatggctc gaaaattaga ggcagaaaaa gcgaagtctg cggcgctggc gaaaaagtta      1440
     aaaaagagca aaaaggagaa ccaagagttg gtggaaacta tgcaaaaaca gatggcaaat      1500
     gacggagcat ctactagtag cggtggtacc tttggattcg acggtgggaa cgagttcacc      1560
     agcacccaga acgtacctag gatggaccag gatgataatc ggattatctc aaggaatatg      1620
     acaggaaata gtcaagagga gtctcggttc ttgtcgtcaa tgaaccaact gtcggttgca      1680
     tccattaacg tgccagaatg taaaccggca gacgatgggg acattcatag gcagacatat      1740
     gagctctgga aggatctttt gatcgactca atgcatctgg ccggaatcga tgacgaacat      1800
     acaatgttca cagtgtttaa agtaaaggct gggattaagc tactcgaaat attccggaac      1860
     acaaagtcgc aaccgaatga tccggacagt gaaacaaggc cgttctctaa tgcaatgcaa      1920
     agactcaaat catattttgg gtcaggatcc gacatcatgt tgatgaggag aaaactggcc      1980
     ttgatggcac agaaaaccga tgagacagat ttggcgttca taaccagagt tggctcaatg      2040
     gctcgcttgt gtggttatga tgaagaaaag gagttcgagg agattgccgc aacggttgct      2100
     gagcatgccc atcataagga agtccgcaca acggcattga agatgctgag caaaaaaggt      2160
     tcctttacag atcttgtcga taaggtgcga gaaattgagt cgataagatt aaacgaagaa      2220
     tacgtcatgc gtaggcgagg aaaagcgact ccagcatcgg tagctgccat aggcactcct      2280
     tttggtcaac caggatttca agagcggtct ctaccggatc aagcctatgc ttctgccagg      2340
     aatgtttctt tgcgtcggca acagagaccc atggatcgtt accaagccag atctcatcct      2400
     taccaacgag tacaaagggc tcgagatggc tggcgggcgc ctcgtggcgg tctacacaag      2460
     acaggcagat cgttgacaaa atgctggcga tgcgatttct tccactcacc ggacgagtgt      2520
     gcagccaagg aaaagatttg caactattgc ggcaagcttg gtcatattcg acgagcttgt      2580
     cgagctcgtt tcatcaaagt tgaatctcaa acattcggtc agcgttccat gaaacccaac      2640
     gatgattctc caaaacgtgt agcagcactg gagacacccg atgacgtatc tgcggaggag      2700
     gaaaaagtga gtgaaataat tgaaaactaa aacggtgaaa gatgacatat tcattcgact      2760
     ggttaatttt ctattttatc atgagcaacc tgcaaaactg aacttcaata ggttgcataa      2820
     ggttttaagt ttaaaaaaaa aaaatgaact cgttctacgt ttcgtttgga tttttcatga      2880
     agatgttgat aagcattaaa taaaaaaaat gtattcctta atatttggtt gaatattttg      2940
     taaacatttt gaaagaaaga aaaccatttt gagtgaaatg tcatcagaat tttatggaag      3000
     acatagtcta ttaaatcaat actacttaat aggacggaaa agcaaaactc attcgaacac      3060
     gggaaagcac ttcggataat gcatcagaaa agtctgatgc agtaaaagta gccatagccg      3120
     gcggcgaaag cgagaggggt tttgatgagg atacgaatca gattttggaa acaggggctg      3180
     agttaataca acgagtaagt atctcttaga agctaatagt gaatcagtct aatttttatc      3240
     atatgactag attcgagcaa catcaagcga ttgtgacgaa ggatacataa gggccagagt      3300
     agcaggaatg atgtgtactt ttttaattga ttcaggagca caggtgaata ctttcaccga      3360
     aaatatgttt cagaaattac ttgccagctc tgaattcagt aaggaagtac tcaatattca      3420
     gaactctggc gatcgtcctc taaaagcata tgctactgag aagaacatcg atgtcctggc      3480
     tacattcgac gcatatctac acgtaacgga taataggcca acgttattgg agaaattcta      3540
     cgttgttaag gaaagccgag cgctcctagg tagatcaaca gcgttgaggt acaacatact      3600
     aatgcttggg cttaaggtac ctgtgcatac agaggataca gacacgagta ggctgtttat      3660
     gtgtaccagt gccatttctt cgattcatgt ggaccagatc tttccgaaat tcaacattcc      3720
     cccggtgaaa atctactacg acacgactaa gcccccttgt agaaatatct tctcaaatat      3780
     acccctggca gtcaaaccac tggttgagca aaggttaaag ggactagttt ctgcaaatat      3840
     cattgaacca gtcatcgatg gcatggacac tacattctgt tcatcgatgc tagtggtccc      3900
     gaaagggaaa gatgatattc gcttggtcat cgatctacga gggccaaatc agtacataca      3960
     tcgtacgccg ttcgcaatgc ccaccttaga gaagattctt gctgatttaa acggtgcgca      4020
     gtggttttca acgatcgact tggccaacgc attcttccac atggagttag acgtgagctc      4080
     gcgacatctt accaatttct ttacggaatt tggtatgttc cgttgcgtaa ggttaccttt      4140
     cggcctttgt aatgctcccg acctgtttca agaggccatg caaaggaaaa ttttggccgg      4200
     ttgtaaaggg tgcaaaaact acctcgatga tatactgata tttgggacga cgaaagcaga      4260
     acatgatgag aacctcgccg cggtacgtgc atgcctggag aatcacaacg ttaagttgaa      4320
     tgaggacaag tgtacgtttg gtagccagtg tgtagctttc ctaggcttca ctctgactcc      4380
     agcaggatgg aaaattgaag aagaaaaagt tgatgccatc aaaaatttcc gcaagcccac      4440
     ctcatgtgcc gaagtgaaaa gttttttggg tttaatcacc tttgtggaca aattcattcc      4500
     acatcgtgcc actaagtcgg agtaccttcg atctttggca tcatcagacg tgttttactg      4560
     gaccgacgat gaggaaaaag agttcatcta tttcagagag gaagcgctga acacgattaa      4620
     acgtttggga ttttacagcc ccattgatcg taccgaactg ttcgtcgatg catccccggt      4680
     agggctagga gcgatactag cgcagtacaa cacagaagga attccaagga tagtggcttg      4740
     cgcctccaaa tcgctaagtg taaccgaaca gagatatcca cagactcaga aagaagccct      4800
     ggctgtggtg tgggctgtgg agaaattttc gttttatttg ttgggtcgaa gcttcatcat      4860
     tcgcactgat gcagaggcga atcaatatat ctttaattcg agtcacagat tgggcaaaag      4920
     agcggtgtct cgagctgaaa gctgggctct cagactacaa ccctacgact ttacaattga      4980
     aagggttcct ggttaccaaa acgtagcgga cgcattatca aggttgatac cggcttcaca      5040
     acaagatgaa ccattcaacg acgatgaaga caatcattat ctgtatgcac tggatcccag      5100
     ttgtatgcag atgacttgga gtgaaatcga ggtggcctct gaagacgata atgagttgga      5160
     aaagctgaga gaagcaattg gatctaatat ctggacagca gaaatacgag gatacgaggc      5220
     tcaaaagaaa ggtttgcata cacttggacc cctcatattc aagaacgaca aaactatttt      5280
     accagctgta ctgcggaaaa aggcgttgag tttggctcat gaaggccatg ttggcgaagt      5340
     agcgacgaaa cgtataatgc gacaattctt ctggtggcct cgaatgtcta cagaagtatc      5400
     acggttcata aagcaatgcg agacgtgtgc cctactatcc aaaaagaatc caccattacc      5460
     actagccagc agaatgctac cggagggtcc ctgggaaatt ttacagatcg atttcctctc      5520
     ggtacctcat ttcggttctg gagaattact agtggttatc gatacatatt cccgttattt      5580
     atgtgttgta gaaatgaagg gtctggatgc tgaaagtacc aatcaagctc tcagcgaagt      5640
     ttttcaaatg tgggggtgcc caatagtcat ccaaagtgac aacggaccac cgttccagag      5700
     cacggcattt actcagtttt ggcaagataa aggcgttgag atccgaaaag caataccatt      5760
     aagtccacag tcaaatggtt cggtcgaacg ccaaaaccaa ggcataatca aggcactggc      5820
     agcatcaagg ctcgacaacc gaaattggcg gcttgctttg cgagaatatg tacaccgaca      5880
     caacacgctc attccacatt cccgcttggg agtaactccg ttcgaaatga tggttggctg      5940
     gaagcaccgc gggaccttcc caagtctgtg gttcaacgca gatagtaatc acgatcgaga      6000
     ggaaatagca gagaaggacg ctgaagctaa actgattagc aaaaagtacg ccgatgcctc      6060
     acgaggagcc aaggaatcag atattgctgt gggagatact gtgctactgg ctcaaccgaa      6120
     aaagaccaaa gtagatccaa ctttttcatc cgaacggtat acagtcattg cgagagaggg      6180
     ggcgaaagtg gtcgtcatta gtaagtctgg attacaatac ggccgcaatg tgcgagaagt      6240
     caaaaaagct cctgaaaccg aaataacagc tgttcctcca cctgccgaag caaacaaagg      6300
     gttcggagtt gaacctagca ttgaagatga tcaggtcgtt ctaccaggtg gtgagctaca      6360
     aggaacgtct gaaccgagtt ctcgaaacag tattccaagc gcgaccactt ccaggaatct      6420
     tcgtcagcgc tcagaaattc aacgtccaac acgatttgac gacgggtata tttatcgcgt      6480
     atttttctga tttcctaaaa ggagaaggaa agaaaagtaa atgagccaaa tttgctgaca      6540
     gatatcaacc taagagaaaa gaaaacacaa attcattaaa aataaatgtt actttgaaat      6600
     ccatgaacac aataataaac tttttgagat tcaaggtgtg tttttgtttt cttgcatttt      6660
     tcaaaccttt ccgaagtgtc tgttagtttt ccttgtagaa gcttttactg ctgttgagga      6720
     atcggatgag ccaggatgat tttcgttttt ttctcaattg agttaatcag agtacaggtg      6780
     aggggaga                                                               6788
//
ID   Gypsy-336_AA-LTR repbase;    DNA;    INV; 500 BP.
XX
AC   .
XX
DT   10-JAN-2019 (Rel. 25.01, Created)
DT   10-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-336_;
KW   Gypsy-336_AA-I; Gypsy-336_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-500
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-500
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 198-198 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 500 BP; 181 A; 73 C; 134 G; 111 T; 1 other;
     tgtagtaaat gggccaacag caaacgggaa aaactgatca aaccggtcaa accaagagaa        60
     actgagaatg taaataaaag atataacgga atcggatttg acaggaagta tatagaagaa       120
     taacactgca cagtaaaatg ttcgaaaata gtttaatatt acccagtcgg taaagtaggt       180
     tcgaaccgtg cttcgaataa gggttcgaat atacactgga aaaacagcaa tggtgatgag       240
     tggagagtcg tttgaaaaac gcaaaaggtg aaatgtgtag aatcagggga aacgcaaaaa       300
     agctgctgcg gaagtgaatt gcagcatcga sgggcagcga atcagggcaa tagaggaagt       360
     aaaaagctaa ggtcattcag tgttccaatt ttggcgaaag cggacgcgtt ttggatctct       420
     gcgaaaattt cggtgtgtga ttcggagtta cagttcggtg ttttgctggg aaaatttgaa       480
     tagcggctac gaatacgaca                                                   500
//
ID   Gypsy-337_AA-I repbase;    DNA;    INV; 9670 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-337_;
KW   Gypsy-337_AA-I; Gypsy-337_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9670
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9670
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 266-266 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3474..4775
FT                 /product="Gypsy-337_AA-I_1p"
FT                 /translation="MIYDFVLDKYVLIRMFIIFCFYRKITRQTTKDSSVLL
FT                 KELDEERKRNASLLLKLKKARANNKLLEQSMEDGSFVRMHSTMRDDLQNDH
FT                 NSIMSSMSNLSFASLQVPECRPIEGEEEIDRKSYEQWRQTLEASMQLAGVI
FT                 DESTKMNIFRIKAGHKLLDVLEGTVSNSESPDIVVYPYSNAVHRLSTFYGS
FT                 RDYLFMQRQKLRSLTQKPGETDVKYVKRVISVAKLCDFGESNVAEHVADTI
FT                 QCHALNRKVREAGRKTLRKGGSLVDLLEKVRALEMEHLNEEMFAKSHGSTS
FT                 AEVAAVTYRGPRAPQSVDQGVGYARYQPNMQPRFTGIGRGNGRGRGFSRRN
FT                 FTRNMTSRNECWRCLSRQHQASTCHAIDKVCRNCQIKGHIERACHHKPLQR
FT                 SIKRRNSDEDEEAAYPKKIAIVKKDEEDASEETVSVPTSV"
FT   CDS           5081..8272
FT                 /product="Gypsy-337_AA-I_2p"
FT                 /translation="MSIWCFGRFSHDINGTIVGRIAGVEVQFLIDSGADVN
FT                 TVSGDTFKYLKNNAVSKLGILSIEEGTDRPLKAYATVHDIEVMATFIAELF
FT                 ISDDRPRTMEKFYVVRHGRALLGRNTAIRYSVLQIGLDVPIQTVSRFNFPG
FT                 EIYSLSGKAEFPKFNVAPVVLNYDESMAPSRRIFTSIPPSLRSETGRRLNE
FT                 LLESGIIERVTNSMDKSYCSSLLVVPKGKHDIRLVVDLRGPNKAIIRTPFK
FT                 MPTLESIMTDLPGRKWFSTIDLTSAFFHVVLDEKSRHLTNFFAGDGMYRFK
FT                 RLPFGLTNAPDTFQEIMQTVVLAGCKGVHNYLDDILVSGDTREEHDKNLKA
FT                 VMERLREHNVSINEEKCVFGEQSVKFLGFRVGQDGIRLEEEKLKAIQEFRR
FT                 PESQLEVKSFLGLMNFAERFIPCRADKTERLRDLAKSETFYWNEELENEFE
FT                 YMKKKALSIISKLGYFDIHDDTELFVDASPIGLGAVLVQYNKEGIPRIISC
FT                 ASKALTDTERRYPQTQKEALAIVWGVERFTFYLTGKTFAVRTDSEANEFIF
FT                 GEGLKTTKRAVSRAEAWALRLQAYDFKMKRVPGDLNVADALSRLISKAQVD
FT                 EPFEDEDGKNLLYSLDIGGMKITWQDIQSEAENDDELLEVQTSIKSGVWPK
FT                 EFSRYAAQAKDLKMLGPLVFKDDKVILPRKLRSLALTEAHQGHLGCPAMKR
FT                 ILRDYFWWPKLSADVEDFVKSCMTCITISKKNPPIPLSNRQLPEGPWEILQ
FT                 VDFLAVPGCGYGEFMVLVDTYSRFISVVEMRQIDAKTTNEALQKIFFTWGL
FT                 PLILQSDNGPPFQSGEFVEFWESRGVKVRKSIPLCPQTNGSVERQNQGILK
FT                 ALTAARLEGISWRKGLQEYVHVHNTLKPHARLCITPFELLVGWKYRGSFPA
FT                 LWSSRRDQVDRDEIRERDATTKLQSKIYADTRRGARPSDIVAGDIVLMAIP
FT                 RKNKTDPFFSDEHYTVLARDGAKVVVRSDRGVQYTRNVQDFKKLPITGDSD
FT                 PEEEYSKHPLHLPEPQSVESPECSPEPVSHSNEPTPRPKRTIRKPSRLKDM
FT                 FVYHIFQ"
XX
SQ   Sequence 9670 BP; 3098 A; 1707 C; 2082 G; 2783 T; 0 other;
     atggcggagt aaaggattcg aaagacgctc ccatgaaaaa gtaagtttga ttatcaagat        60
     attcgaattg tttatcaaaa tactttttaa taatgaaact cggcttaaca taaacaaatt       120
     tgcttaaaag ttttaaattc cgaatacaat tttataacta gcttattggt tcagttcgat       180
     acaacattca aaatggtgtc tattcaagcg ccaaccaaaa attattctcg cgatcggctg       240
     aaaaatacaa aatggcgtct accagatatt ttttgcacgc ggatgtatcg aaattcgtca       300
     tggcgtctat tgaaaataga tgataaaatt aaattttcac actgactggt gctgctctga       360
     aaccgtttaa agttttaatt gatgtaaact caatatagta aacgaaatag ttagcaataa       420
     ccgaaattta atcacgactg tgccaaggaa caatgatggt gaaccaacaa ttgattaaaa       480
     aaaagaagaa gatagtttat gttgacctaa cattggatta gtattgtaag cctgataagt       540
     ttacattaaa tactattcct cgtgttaagt ctatgttcca acggtttact gaattaaatt       600
     atgcagtaaa caaaaagttt gcaatgatcg aaatcaaatc acgactagaa gaagatcaaa       660
     tccaacctcc gagcgggttg gtgtgtctag taatagacac ttgatccggg tggatcagaa       720
     cgacttccga actggttcat caaatcagta tgagatgttt gacccgggtg ggttatagaa       780
     atagagatat agtttccaaa caatgcgaaa aattggatcc atcctctgag cgggttggtt       840
     cgtgcgatat gagactcctg gcccgggtgg accaaggaaa aatgactaaa gaccaacttt       900
     cagttggtgt agttagagtt ccgcaaaatc cgacttccga gcaagttggt gtgtcaagta       960
     agcactggat tcgggtgaat ccattggtca cgtttgcacg ttgaaaggaa ttaatcgaga      1020
     atactgaaaa ttcgtgacct aaaaaaaaat aaaatgtgtt aaaaaaaaga aaaacaataa      1080
     aatgtattta gcaagttatt catattcaat cagaatcaaa atagttgttt tgcgttttgc      1140
     aatgagccta attagttcaa gaaaacaagt aaaaaaaaaa aatgatgaaa atgagattat      1200
     acatattaca ccataagcta tgtaaggtac agtggtcaca ctattatggg tcattttcat      1260
     ttaaattaca tgttaaatag agtgactagt aatcgtgatg actcataata gtgtaagtag      1320
     tgaatatgtt cagttttttt ttttgtgtgg atttttattc tatcgtcgaa agaaagttta      1380
     ttaatgtggt tataacgcat taggaagaaa aaacatattt tttatcgttc tgtcatgatc      1440
     tgaatgtttt cctgatattt tgcaataagc ctgataagct tatcgcaatc aattcaacat      1500
     gttcaggtcc tgacataaaa atgatgactt tagcgtgagc tatttttgtg gactttattc      1560
     tttcgtcgaa aggaagttta tgaatgtggt tataattatt aacaggaaaa atattttttc      1620
     tcgatctgtc atgatctgag tgttttgctg atactttgca ataagcctga taagcttatc      1680
     gcaatcagtt taacaagatc aggtccttat atgaaaatga tgagtttcgt tgacctaaca      1740
     ttggattggt attgtaagcc tgataagttt acattatata ctattcctcg tgttaagtct      1800
     acgttccaac ggtttactga attgaattat gcagtaaaca aaaggcttgc aatgatcgaa      1860
     atcaaatcac gactagaaga agctcaaatc caacctccta gcgagttggt gtgtctagta      1920
     atagacactt gatccgggtg gatcagaacg acttccgaac tatagtttcc aaacaatgcg      1980
     aaaaattgga tccatcctct gagcgggttg gttcgtgcga tatgagactc ctggcccggg      2040
     tggaccaagg aaaaatgact atggaccaac tttcagttgg tgtaattaga gttccgcaaa      2100
     atccgacttc cgagcaagtt ggtgtgttaa gtaagcactg tattcgggtg aatccattgg      2160
     tcacgtttgc acgttgaaag gaattaatcg agaatactga aaattcgtga cctaaaaaaa      2220
     taaaatgtgt taaaaaaaaa gaaaaacaat aaaatgtatt tagcaagtta ttcatattca      2280
     atcagaatca aaatagttgt tttgcgtttt gcaatgagcc taataagttc aagggaacca      2340
     gtaaaacaaa ttgaagatta taaaagattt actggaaggg tgaacatata atatatagca      2400
     ttcacgagac atcataagct atgtaaggta tatgtactat ttttatggat tttattattt      2460
     catcgaaagg aagtttatga atgtgaataa gaaaaataat attttgttct cgatctgtca      2520
     tgatctgaat gttttgctga tattttgcaa taagcctgat aagcttatcg caatcagttt      2580
     aacaagatca ggtcctgaca taaaaatgat gagtttcgtt gacctaacat tggattggta      2640
     ttgtaagcct gataagttta cattaaatac tattcctcgt gttaagtcta cgttcaaacg      2700
     gtttactgaa ttagattatg cagtgaatca aatagtttgc aataatcgaa atcaaatcac      2760
     aactagaaga agctcaaatc caacctccta gcgggttggt gtgtctagta atagacactt      2820
     gatccaggtg gatcagaatg acttctgaac tgtttgaagg ttgaatttgg atataaaaag      2880
     cgataaattg gattcatcct ctgagcgggt tcgttcgtgt ctggtgagac tcctgaccca      2940
     ggtgggtcaa ggaaaaatta ctatgaacca atatggatat aagttggaca caggatatta      3000
     gcaaagctct gactttgctg gaatgagaaa aatccgcaaa tccaatttct gagcgaatta      3060
     gtgtgtctca aaagcactgg attcgggcga atccatcgtt cacgttcgca ctttgaataa      3120
     gaatgtatcg atagtaccga tagggtgtga cctaaaaata aaatttgtta aaaaaaaaag      3180
     atatattaaa tgtacaatag ttgaatattt aaatatgacg aaggttttca ctaaatttgt      3240
     agatgaactt atcaacaatt agtgaaatat tataaccttg atggtttgct gaatcagaac      3300
     gggtttcatt cttagcaaca taccgtctga aagaattcat atttgtatca aactaatgtt      3360
     ttataaattg atttaaacaa aactaattat ctacattcct tattctaaaa tttaatccat      3420
     attaagaaac tataggttaa aaataacagt atgaagcgtt gattagttaa gtgatgattt      3480
     atgattttgt tttggataaa tatgtgttaa ttcgaatgtt tattatattc tgcttttata      3540
     gaaaaattac aaggcaaacg actaaggatt cgtcggtatt gctgaaagag ttggacgagg      3600
     agagaaagcg taacgcatca ctgctgctca aactaaaaaa agcaagagcc aacaacaagt      3660
     tacttgagca gtctatggaa gatggaagtt tcgtacggat gcactctacg atgcgggatg      3720
     atttacagaa cgaccataat tcgattatgt cttcgatgag caacttgtcg ttcgcttccc      3780
     ttcaggtgcc ggaatgcaga ccaatcgaag gagaagagga aattgatcgc aaatcctatg      3840
     aacaatggcg tcaaacgctg gaagcgtcca tgcaattggc cggcgtaatc gacgaatcaa      3900
     caaaaatgaa catcttccgt attaaagcgg gtcataagct acttgatgtt ctcgaaggca      3960
     cggtatctaa ctcagagtct ccggatattg tggtctaccc ctattcgaat gcagtacatc      4020
     gcctgagcac gttctatggc tctcgtgatt acctgtttat gcagcgacaa aaacttcgat      4080
     cgttgactca aaagccggga gaaaccgatg taaagtatgt gaagcgagtg atttcagtag      4140
     caaagctctg tgattttgga gagtccaacg tagcagaaca tgtagctgac acaattcagt      4200
     gtcatgctct caaccgaaaa gtacgtgaag caggaagaaa gactctcagg aagggagggt      4260
     cattagttga ccttttggag aaagttcgag ctctcgagat ggaacacttg aacgaagaaa      4320
     tgttcgctaa aagtcacggc tctacatcag cagaggttgc ggcggttact tacagaggac      4380
     caagagctcc gcaatcagtt gatcaaggtg ttggatacgc aaggtatcag ccaaatatgc      4440
     agccaaggtt taccggaatt ggaagaggca atggacgagg aagaggtttc agtcgcagga      4500
     atttcaccag gaatatgaca tcgcgtaacg agtgctggcg atgcctcagc agacaacacc      4560
     aggcttccac ttgtcatgcg attgacaaag tttgtcgcaa ttgtcagatc aagggtcaca      4620
     tcgagcgagc gtgtcatcat aaaccattgc agagatcgat caaacgtcgt aacagtgacg      4680
     aagacgagga agcagcgtac ccgaagaaaa ttgccatcgt gaagaaggac gaggaagacg      4740
     catctgaaga aactgtaagt gtacccacat ccgtttaatt ttttattctg attcgtgttg      4800
     atatcactga attcgttcag cgcgaatcat ttttttttat aaacattggg ataacttatc      4860
     aaaatttgaa atgtttgagt tcgaactgtt attttcccat ttgaaaataa aatgaataaa      4920
     aggttagtaa agtcgatttt ttatatatat tctacatggg ttctaggtga aaatacagtt      4980
     ccaatcaccg ttggaagtta acagtaatgc tgttaatgta cctatcttaa gccgatcgtg      5040
     tgggggtgaa atcacaacag atgaagagga cgagtctgaa atgtctattt ggtgctttgg      5100
     aagattttct cacgacatca atggaactat tgtgggtcgt atagctggag tagaggttca      5160
     atttcttatt gactccggcg cagatgtgaa taccgtcagc ggtgacacat tcaagtacct      5220
     aaaaaacaac gctgtatcta agcttggaat tttaagcatt gaggaaggca ctgataggcc      5280
     acttaaagct tacgcgactg tacatgacat tgaggtgatg gcaacattca tagcagagct      5340
     tttcataagc gatgatcgtc cccgtacgat ggaaaagttc tatgttgtac gtcacggacg      5400
     ggcgttacta ggcaggaata ctgccattcg atacagcgtt ttacaaatcg gactggatgt      5460
     gcctatacaa actgtatcac gtttcaattt tcctggagaa atctattccc tatccggtaa      5520
     ggcagagttt ccaaaattca atgtggcccc agttgttttg aattatgatg aaagtatggc      5580
     accatctagg agaatattca ccagcattcc gccatcgctc cggtcagaga ctggacgacg      5640
     tcttaatgaa ttattggaat ccggaattat cgaacgtgtt actaattcaa tggacaaatc      5700
     ctactgttct tccctgctag tcgtccctaa agggaaacac gacattcgat tagttgtcga      5760
     tttgaggggt ccaaacaagg caattattcg tactcctttc aaaatgccca cgttagagtc      5820
     cattatgaca gatcttccag gacgaaaatg gttctcgaca atagatttga cgagcgcatt      5880
     ttttcacgtt gtgcttgacg agaaatcacg gcatttgacg aatttcttcg ccggcgacgg      5940
     catgtaccgt ttcaaaaggc tgccttttgg acttacgaat gcgccagaca cgtttcagga      6000
     aatcatgcaa accgtcgttt tggcaggttg caagggggtc cacaattatc ttgatgacat      6060
     tttggtgtct ggagatacaa gagaagagca cgataagaac ttgaaagctg tgatggagag      6120
     acttcgtgag cataatgtta gcatcaacga ggagaaatgt gtatttggcg aacaatccgt      6180
     caaatttctt ggatttcggg ttggtcagga tggaataaga ctggaagaag aaaaactcaa      6240
     agcgattcaa gagttccgac gaccggaatc ccagcttgag gtaaaaagtt ttctcgggtt      6300
     gatgaatttt gcggagaggt ttattccatg tcgagctgat aagaccgaaa ggctgagaga      6360
     cctggccaaa tctgagactt tctactggaa tgaggagtta gagaacgaat ttgaatacat      6420
     gaaaaagaaa gcactcagta ttatctcgaa gctaggatat ttcgacatcc atgatgatac      6480
     tgagcttttc gtggacgctt ctccaatagg cctgggcgct gtcctcgttc agtacaataa      6540
     agaaggaatt ccacgaataa tctcttgcgc atcgaaggcg ttgacggata cagagcgaag      6600
     atatccccaa acgcaaaaag aggcgcttgc cattgtttgg ggagttgaaa gatttacttt      6660
     ttacttgacc gggaaaacat ttgcggttcg tacggactca gaagcgaacg aatttatctt      6720
     tggagaaggg ctgaaaacga ctaaacgggc ggtatccagg gcggaagctt gggcattgcg      6780
     gttgcaagca tacgatttca agatgaaacg agtcccgggc gacctgaatg tggccgacgc      6840
     cttatctcgt ttgatatcaa aagctcaagt cgacgaacca tttgaagatg aagatgggaa      6900
     gaatttgctc tattcgctcg atattggtgg catgaagata acctggcagg atatacaatc      6960
     ggaggctgaa aatgacgatg aattactaga ggttcaaaca agtatcaagt caggtgtatg      7020
     gccgaaagaa ttttctcgct acgcagcaca agcaaaagat ttgaaaatgt tgggtcccct      7080
     tgtgttcaaa gatgacaagg taatacttcc tcgaaaattg cgatctttgg cattaaccga      7140
     agctcatcaa ggacacttgg gatgcccggc tatgaaaagg attctccgag actatttttg      7200
     gtggccaaaa ctgagcgctg atgtcgaaga tttcgtcaaa agctgcatga catgtataac      7260
     catctcgaag aagaatcctc ccattccttt gtcaaatcgc caacttccag aagggccgtg      7320
     ggaaattctc caagtagatt tcctcgctgt tcccggttgt ggatatggcg aattcatggt      7380
     tttggtggac acctattctc gtttcatttc cgtagtagag atgagacaaa tcgatgctaa      7440
     aacaaccaac gaagctttgc agaagatttt cttcacatgg ggtcttccac ttatattaca      7500
     aagtgacaac ggtccaccct tccaaagcgg agaatttgtt gaattctggg aatcaagagg      7560
     tgtcaaggtc cgaaaatcaa ttccactatg ccctcaaact aacggatcag ttgaacgcca      7620
     gaatcagggc atattgaaag cattgacagc agcaagatta gaaggaatca gctggagaaa      7680
     aggacttcaa gaatatgtac atgtacacaa tactctaaaa ccacacgcaa ggctttgtat      7740
     aacgccgttt gaactattag tcggctggaa atatagggga tctttcccag ctctatggag      7800
     ttccaggcga gatcaagttg accgagatga aattcgtgaa cgagacgcaa caaccaaatt      7860
     gcaaagcaaa atctatgctg atactcggcg aggagcaagg ccatctgata ttgtggcagg      7920
     tgatatcgta ctgatggcaa ttccgagaaa gaacaagacc gaccctttct tctctgatga      7980
     gcactacact gttttggcta gggatggtgc caaggtagta gtccggagcg acagaggagt      8040
     gcagtataca cgaaacgttc aagatttcaa gaaactacca ataactggcg actcagatcc      8100
     cgaagaggag tattcgaagc atccattaca tcttccagag ccccaatcag tggaatcgcc      8160
     ggaatgttca ccggaaccgg tttcacattc aaacgagccg acgccaagac cgaagcgtac      8220
     tatccgtaag ccaagtcgct tgaaggatat gtttgtgtat cacattttcc aataacggta      8280
     agtctaagga cacgtaaagt gcccaattga tgtttgcaac atgccaacga atttgccaca      8340
     catgttgcca aaattgaacg ggcactgtat gttcaaagta atataggagg aaaaactatc      8400
     gagctaattt tcttatactt ttcacagtta tcgacgaacc tgtctgctac gaaaatgtgt      8460
     tgaggaagtc gatccgtgct gcagtgttcg aatattatgt taggggtctc attcgttaaa      8520
     aaacttacca acgtaactgt ttccttacga cgaaccaggt cccggctaga atgcgttgaa      8580
     agtgactgta gcggattcca tttcagcttg ttagtgtgac taattaaaat acatcaaaat      8640
     cgatcaatgt cagattttta gttgcgttgg ggcgtctgaa agattgcgca gaactcgtgc      8700
     ataggtccat tggtttgtcc ttttttcctg catcactact ggaaaacttc gcaacaaatt      8760
     ttcagctttt gttgctgagc agcctcctct ctttcaggta cctacctaag aagtcgtttt      8820
     cgtttttagg aattgggctg gtgacgaaac gtaaacaatc caacatcaaa caaattatag      8880
     tacggtcaag cctgaatcgg gttggggctg agactgtgat tcagaacggg tttcgccggt      8940
     tccaccctag gttcaaaaca aatggcgtgt gtcaactacg gtttgactta gtttgacaga      9000
     attgtaacgc cacctcgctg ctgttacgag aattaggtga atctagaata acttttcaat      9060
     aggtccaaac aacaaagagt gcttaaatga atattattca accgcgcata tgggtaatga      9120
     tatttaaatg atcatgatgg atgataaata tgtattttgg tttatttcag atcgatataa      9180
     ttccctaatt caattatatc gattataata tcgataaccg attatatatc ggttataatt      9240
     aaattattat attatatgat tttatgtgaa tgattgtgcc gtgatatttt tttttgttaa      9300
     tcgtcagtta tacttttgaa taattgtttg tattcttttt tcacaatgga cgaatagaat      9360
     tgaggttaaa ttttgcaaaa tccattatta aaactcaaga ttggcgtttg caaaacaact      9420
     tgaatcgcga tgaaaatggt tgttgttaca atcttaacaa attttacatc atttaggcga      9480
     tatcaagtca gaattagctt attttatttc taattttacc gtaacataac cgaactgcta      9540
     ttcttcaatt ctcacgatgt gatttctatc catcgaacaa aattttggac attcatatta      9600
     ttaatataat aaaaagactt tattattaaa taaataagca agctaatttg agagtagggg      9660
     tgagagaaga                                                             9670
//
ID   Gypsy-337_AA-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-337_;
KW   Gypsy-337_AA-I; Gypsy-337_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-462
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-462
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 235-235 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 462 BP; 180 A; 74 C; 85 G; 123 T; 0 other;
     tgtaggtatt aagaataaaa taaaacaaaa taaaatatta ataattcata tgagtaagat        60
     aggtattatg aataaaataa aacaaaataa acgattaata attcacatga gtaagataga       120
     tatgaatctc atatcctttt gtaattcaaa ccagtctaat acataagaac gaaagctttg       180
     agtaacgata agctttgctg tgtggagaca taacgaaaag ggtgcatgaa aaaatatcta       240
     aacgaaagtt actcgaatga ttcgtggaga tgaacgaaga gagtgataga tgatgccggt       300
     aatcgcgctt actctctctc tctctttctc tctcggctat accttagtca catacccaac       360
     cattctggaa ggagcattca gttttgagaa taacgttcta gcgagcaggc gcaagtgcaa       420
     acagtttaaa aaacaagtgc gagaaaatgg cttcacccta ca                          462
//
ID   Gypsy-338_AA-I repbase;    DNA;    INV; 6011 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-338_;
KW   Gypsy-338_AA-I; Gypsy-338_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6011
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6011
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 267-267 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..1079
FT                 /product="Gypsy-338_AA-I_1p"
FT                 /translation="MPETRASEMEALRAEIEQLKALMTIGNSSKFCIPDPI
FT                 KNLSEFSGNKKELSSWLREVDELYDMFKIKGANGQPDSLSSMYLRAIKNKV
FT                 QGDARAILCANGDPDTIYGIKQILIEQYGDHRDFATNVSSLFNLRRGDKSH
FT                 LRFYNDCKDINTRLKANLLSNPLSVRQIIDVLSVTRYLDNIGEPLASIIRQ
FT                 SKPNTLEEAYEAVSINQNAEIRTKPIKFHSQSRPHNDPKSSGSYNNNNGKT
FT                 NPNASKFVYKKQVQQHKPRAEYNTNEIDVANEYDDDNDDDDNDDNVTNSEV
FT                 HSDDSNFLEEERQQAAT"
FT   CDS           4881..5972
FT                 /product="Gypsy-338_AA-I_3p"
FT                 /translation="MRNLTRTFNLLIDNEQKLENVTFKSFDSLNFVFELDE
FT                 LLYYLEVVEESITLARSSIPNSRIIHERELEAIQRILNGNGFGLDSVDSIL
FT                 NIASAYVMFNKDTFIYILKIPRIKNVPYTLSFVEPVIAEGYRIHLPKPFYL
FT                 KGKTSFISQSPCSKLKALFVCSNTNLEPLTECMQQLISGETADCPMERIYG
FT                 DKTIRKVNDGNIVIHGDNITLRSNCSTTRFLSGSYLIQHSNCTLNLDDEEY
FT                 TSTNLEIQPFTPVTTIKVNPTNVINHIPLEHLQELHLEHRNHIDHLNLTTE
FT                 NIHWKLNIFGWIVSASATTLLVFILGTIITIVFKLFIFKTVFAPNMREGTK
FT                 ENSSSTEAHPESRSIPLIPQQ"
FT   CDS           1253..4402
FT                 /product="Gypsy-338_AA-I_2p"
FT                 /translation="MVHINIFPRVSNEKLPFHVFKFHEFFDGLIGYENLAA
FT                 MKAKIDSGNHQLLIRNIQYPLSKYYPRSWNFHEQTEELAEICTTSDGTFLI
FT                 ENELNLTTGVTLQPGLYAAKNNRATVHLFSTKRAKLNEIKPLENERYFLNQ
FT                 HETCPRLNFPADHLSREEVKLLAKTLQPYKSIFYQEGQKLDFTHQVKHKIE
FT                 TTDSNPIHQRTYKYPYHLREIVSDHIQTMLESGIIRESSSAWTSPIWVVPK
FT                 KADNSGVKKYRIVVDYRKLNKVTPADRYPIPEISEILDRLGKAQYFSVLDL
FT                 ASGFHQIEVEPADIPKTAFNVDNGKYEFVRMPFGLKNAPATFQRLMDSVLR
FT                 KHLGVRCFVYMDDIIIFSSSLEEHMKDIQKVLKTLKEANLKIQCDKSEFLR
FT                 KEVEFLGHVVTTEGVKPNPKKVEAVENWPLPKTPKELKSFLGTISYYRRFI
FT                 PGFAQIAKPMTSMLRGKNKLIVSTPEYEEAFAKLKEIMSSKLLLIYPDFDK
FT                 PFILTTDASNYAIGAVLTQLVDGHERPIAYLSRTLSKAEEKYSATAKELLA
FT                 IYFAAKKFRPYLYGKKFTIYTDHEPLTKEIKLTDATGRVTRQRLYLEQFDF
FT                 ELIYKKGKQNVVADGLSRIPRVDEVNLQTVLENELFENDPIYGPEIINKFK
FT                 NQLIMHISQDKKKSPHIFYSVFSGFSRHIFHQEEYTEDQLLQILKKYLAPG
FT                 MTNGIFAHPSVAKSCFKIINDNFKGMKVQFCNLKLPDLITKKDQDEFVRKT
FT                 HNFNHRSWKLNYEELRQSVFFPDMISIVKNFAKNCQDCKFAKYERHPFKIP
FT                 ITRRTYEKPLENIFIDVYVKEGEKFLTVIDSFSKFAQLYKISSETSEELIE
FT                 TLIKYFKTFGIPKLITCDQATSFRSQNFKTFLEENGVAVHYASSSNSNGII
FT                 ERFHNTLLEMFMANRSKINNLTLYQGLSLITALYNDAKHTTTNLTPRQIIF
FT                 GNSTSLDLKDINMMKQQIIQTAKDNIARIATRHNSKIVETDKDYQDIKNKE
FT                 ILAKTKAKPSPYSNRYRLVEVKEQNDKTITDTTDIKIHKKNLKL"
XX
SQ   Sequence 6011 BP; 2180 A; 1231 C; 1089 G; 1511 T; 0 other;
     tggtgtcaga agtgggatcg tgaaggtgtt aaaatagagg aaacagtccc gccgcacgat        60
     cgagaaaacc cggatgcaga cttcaagact gtaagtagaa actaattaat cctatttttc       120
     aaaccaatac tttttaaaat tcatattata caatgcctga aaccagggct tcggaaatgg       180
     aggcgcttcg agctgaaatt gaacagctca aagcgttgat gacgatcggg aatagcagca       240
     aattctgcat tcccgatcca atcaaaaatt tgtcggaatt ttccggcaac aagaaggaac       300
     tgtcgagctg gctacgcgaa gtggacgagc tatacgacat gttcaaaata aagggcgcga       360
     atggacagcc cgactcacta agctctatgt atttaagagc aataaaaaat aaagtacaag       420
     gagatgcccg cgcgattcta tgcgcaaatg gcgatcccga taccatctat ggtatcaaac       480
     aaattttgat cgaacaatat ggtgaccacc gagactttgc gaccaatgtg tcgtcgttat       540
     tcaatttacg gcgaggtgac aaaagccacc tcaggtttta caacgattgc aaagacatca       600
     acacaagact taaagcaaat ttgttgtcga atcctctatc cgttcgacaa attatagatg       660
     ttttaagtgt aactagatat ttagataaca ttggggagcc tttagcttcc ataataagac       720
     aatcgaagcc aaatacgttg gaagaagcat acgaagccgt atccataaat caaaacgcag       780
     aaattagaac gaagcctatt aaatttcatt cacagtccag acctcataac gaccctaaaa       840
     gcagcggctc atataataac aataacggca aaacaaatcc aaacgcgagt aaatttgttt       900
     ataaaaaaca agtgcaacag cataaacctc gggcagaata caatactaac gagatcgacg       960
     tggctaatga atacgacgat gacaacgatg atgacgacaa cgatgacaat gtgacaaaca      1020
     gtgaagtgca tagtgatgat tcaaattttt tagaagaaga gcgtcagcag gcagcaacgt      1080
     aaacaatttt ataccttaca ttaattacca gacaaataaa ggagtgctta aattcttaat      1140
     cgatacgggc gcaaataaat cttacattag tccggaacat gtgcacagga ccaaaataac      1200
     ggatcggccc gcaatagtaa cgaacaaaaa tggtaaattt atcatcgaca aaatggtcca      1260
     cataaatatt ttccccagag tatccaatga aaagcttcct tttcacgttt ttaaatttca      1320
     tgaatttttc gacggcctca ttggctacga aaacttagca gcaatgaaag ccaaaattga      1380
     ctcaggcaat catcaactgt tgataagaaa cattcagtat ccactttcaa aatattatcc      1440
     acgttcatgg aacttccacg aacaaacgga ggagctagct gagatatgca ccacctccga      1500
     tgggacattt ctcattgaga acgagttaaa cctaacgacc ggtgttacgt tacaacctgg      1560
     tttatatgca gctaaaaata atcgtgccac agtgcattta ttcagtacca agcgtgctaa      1620
     actgaacgaa attaaaccgc tcgaaaatga acgctatttc cttaatcaac atgaaacgtg      1680
     tccgcgactg aacttcccag cggatcacct aagcagagaa gaagtcaaac tcttagctaa      1740
     gactctacaa ccatataaaa gcatttttta tcaagaagga caaaaattag atttcacaca      1800
     tcaagtaaaa cataaaattg aaactaccga cagcaatccg atccaccagc gaacctacaa      1860
     atatccatac catttgagag aaatagtaag tgaccatata caaacaatgt tagagtccgg      1920
     tattatacga gaatcgtctt ctgcttggac ctcccccatt tgggtcgtcc cgaagaaagc      1980
     agacaattca ggtgtgaaga agtaccgcat agttgttgac tataggaaat taaataaagt      2040
     cacgcctgcg gatcgttacc caatacccga gataagtgaa atactagatc gcttaggcaa      2100
     ggcgcaatat ttttctgtgc ttgatttagc cagcggattc catcaaatag aggtagaacc      2160
     agctgacatt ccaaagacag catttaatgt tgacaatgga aaatatgaat tcgtgagaat      2220
     gccgttcggg ttaaagaatg cgcccgcgac attccagcgt ctcatggact ctgtgttacg      2280
     taaacacttg ggagtaagat gtttcgtcta tatggacgac atcattatat tctctagttc      2340
     attggaagaa catatgaaag atattcagaa agttttgaaa actctcaaag aagcaaattt      2400
     gaaaatacaa tgtgacaagt cggaattcct tcgaaaggaa gtagaattcc ttggacacgt      2460
     tgtaaccacg gaaggggtta aacctaaccc aaaaaaggtg gaggcagttg aaaattggcc      2520
     tctcccgaaa acaccaaaag aacttaaatc gttcttagga actatttcat attatagacg      2580
     ttttatacca ggttttgcgc aaattgcaaa accaatgact agtatgcttc gggggaaaaa      2640
     caaacttatc gtttctactc cggaatatga ggaagcattt gcaaaattaa aggaaattat      2700
     gagctctaaa cttctattaa tctatcccga tttcgataag ccgtttattc taacaacgga      2760
     cgcgtcgaat tacgccattg gagccgtttt aactcaattg gtagacggac acgaaagacc      2820
     gattgcgtac ctttcgcgca ccttatcgaa agcggaggaa aagtactccg ctacagcaaa      2880
     agagctcttg gccatatatt tcgcagcaaa aaagtttcgg ccatatctgt atggtaagaa      2940
     atttactatt tatacagatc atgaaccgct aaccaaagaa atcaaactga ctgatgctac      3000
     aggtcgagta actcgccaac gattgtatct agagcagttc gatttcgagt taatttataa      3060
     aaaaggaaaa caaaacgtgg tagcagatgg attgtccaga ataccacggg ttgatgaagt      3120
     gaatcttcaa acagtacttg aaaatgagct tttcgaaaac gatcctattt acggaccgga      3180
     aatcattaat aaattcaaaa atcaactcat tatgcatata tcccaagaca agaaaaaatc      3240
     ccctcacata ttttattccg tattttcagg ttttagcaga cacatatttc accaggaaga      3300
     atacactgag gaccagctat tgcaaatttt aaaaaaatat ttagctcccg gaatgacaaa      3360
     cggaatcttt gcccatccgt cggttgcaaa atcgtgcttc aaaatcataa atgacaattt      3420
     taaagggatg aaagttcaat tttgcaacct gaaattacca gatttaataa ccaaaaaaga      3480
     ccaagacgaa tttgttcgta aaacgcacaa ctttaaccat agaagttgga agcttaatta      3540
     cgaagaactt cgtcaatcag tctttttccc ggatatgata tcgattgtta agaacttcgc      3600
     gaaaaattgc caagactgta aatttgccaa atacgaacgg catccattta aaattccaat      3660
     cacgcgaaga acatatgaga aacctttaga gaatatcttt atagacgtat acgtcaagga      3720
     aggagagaag ttcttaacag tcatcgattc attttctaaa tttgcacaac tttacaaaat      3780
     cagtagcgaa acaagcgaag agttaatcga aactctcatt aaatacttca aaacgtttgg      3840
     aataccaaaa ttgatcactt gtgatcaagc tacatcattt cggagccaaa atttcaaaac      3900
     ctttttggaa gaaaacggtg ttgccgttca ctatgctagt agcagcaata gtaatggcat      3960
     catcgagagg ttccataaca ccctcctaga gatgtttatg gcaaaccgaa gcaaaatcaa      4020
     taacctaact ctgtaccaag gactttcact tataacagca ctgtataacg acgcaaagca      4080
     tacaacaacg aatctcacac caagacaaat aatcttcgga aattcgactt cactagactt      4140
     gaaggacata aacatgatga aacaacaaat aatacaaact gccaaagaca atattgccag      4200
     aatagctacc agacataatt caaaaatagt agaaacggac aaagactatc aagacatcaa      4260
     aaacaaagaa attcttgcca aaactaaagc caaaccatct ccatatagca atagatatag      4320
     actggtcgag gtaaaggaac agaatgacaa aacaattacc gacacaacgg acatcaaaat      4380
     tcataagaaa aatttaaaac tctaatggga ttgacgaggt atgttgcttt ttctgacttt      4440
     atttcagact atgtttccta ttctggacat ctacagcttg gacagacatc cgcatttacg      4500
     acctgactaa taatcccata gcaatcatac ctctcggaca ggccaggatt agtaacagtt      4560
     atatcagagt aattcatccc gtaaatttaa cagccataaa agatgctata gatttgtttg      4620
     actatgtaac taaaaattct gatttaaata attcactttt cgatcaagtt attagaaaaa      4680
     agataaataa aatacactta acgttcaaca gaattgtacc tcaaaacaga ttcaagagat      4740
     gggaatcact cggtagggcg tggaaatacg tatcaggcag tcctgatgcg gacgatttga      4800
     aagtcattaa ctcaacaatc aattctttag taactgaaaa taataatcaa atacacatta      4860
     ataatgtatt cgagaaaaga atgagaaacc ttacaagaac tttcaatctt ctgatagata      4920
     acgagcaaaa attagaaaat gttacattta aaagctttga ttcacttaat tttgtattcg      4980
     aacttgatga actattgtat tacctagaag ttgtcgagga atccattaca ttggcgagaa      5040
     gcagcatccc aaacagtcgc atcattcacg aacgggaact ggaagccata caaagaatcc      5100
     tcaacggcaa tggctttgga cttgactcgg ttgacagtat tttgaacatc gccagtgctt      5160
     acgtaatgtt caacaaagac acattcatat acatactgaa aatacccaga atcaaaaacg      5220
     taccgtacac actcagcttc gttgaaccag taattgcaga aggttaccgc attcatttac      5280
     caaaaccatt ttacctgaaa gggaaaactt cattcatctc acaaagccca tgttctaagt      5340
     taaaagctct cttcgtgtgt tccaatacca atttagaacc actcacagaa tgtatgcaac      5400
     aactaatctc cggagagaca gctgattgcc ccatggaacg aatctatgga gataaaacta      5460
     tacgaaaagt taacgatggc aatattgtta ttcacggaga caacatcacc ctgaggtcca      5520
     actgttcaac cacccgattc cttagtggat catacctcat tcagcattca aactgtacgt      5580
     taaacctgga cgatgaggag tacacaagta ctaacctgga aatacaaccg ttcacaccgg      5640
     ttaccacaat caaggtaaat ccgaccaatg tgataaacca tatcccgttg gaacatttac      5700
     aggaactaca tttagagcat cggaaccata tagatcacct caacctaaca acggaaaata      5760
     tacattggaa actaaacatc tttgggtgga tagtttcggc ttcagcaaca acgttactgg      5820
     tcttcatact gggtacaatc ataaccatag tcttcaagct tttcattttc aaaacagtct      5880
     ttgcaccgaa catgcgagaa ggaaccaagg aaaatagcag ttcaaccgag gcgcatcctg      5940
     agtcgagaag cataccgctt atcccgcagc aatagaggaa gccgaggacg gcttctaact      6000
     agaaggggag c                                                           6011
//
ID   Gypsy-338_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-338_;
KW   Gypsy-338_AA-I; Gypsy-338_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 199-199 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 79 A; 45 C; 66 G; 74 T; 0 other;
     cgttagcgaa acgtagtcat tcgcatacac tgacacaccg gatggatggc gatacttaca        60
     tgcatggata acatagtgga tggcgtcaac cgccgagtca gcagatttat attataaaaa       120
     ggtagtgacc gcgtggctcg ttctcttttt tcctgaaggc gtctgatcaa ctaccggtgg       180
     tagaggtata gtgtagtgaa taaagtggtt gtaaattaga attaaagttt ttaaaaagtt       240
     gaagaagttc ctgccgaact taag                                              264
//
ID   Gypsy-339_AA-I repbase;    DNA;    INV; 6142 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-339_;
KW   Gypsy-339_AA-I; Gypsy-339_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6142
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6142
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           517..2325
FT                 /product="Gypsy-339_AA-I_1p"
FT                 /translation="MESEIQIKYRTLLVHHLDKEEVEFELDVRAVQFENTE
FT                 SVGVLRRRLREALKDKGEQVEVDFSKCNNRTVDGEIKLIDQNVEEIRDILE
FT                 KKKSFEGVKDSLKTRLVHYFARCLAVQRVAEEDADLEDLDKLLGTVRQLYN
FT                 TYFTLFTPIESIRKEVMLQISNSLTQLHLAQPSTSGVARQVQSRSQETQTE
FT                 DDLCSHEDDRSIQANARTTPSRRQLKSNIVPTMELTSSLNFPSMMSQPSGS
FT                 GMNSRRSGEERILNRIDLSGKGRRPTGKEETSERGTDSSSSQSPPSRRRSR
FT                 QRRSNVKRSRPVSDWNLRYDGRDGGQGLMRFIKEVEFYAKSENISEKELFR
FT                 SAIHLFAGAAKLWFMSGVENGDFSSWKDLVTEMKREFLSPDHDHVSEFRAI
FT                 ERKQRPKEKFQDFFFDMQKLFNALTKPISERKKFEIVFRNLRADYKGYVVA
FT                 ANIDNLADLKPFGRKLDATFWYKYENRNTEDNSSKNRNQVSELKSNSKPKQ
FT                 TGPMNRPDKMRTDQKPLSKPEEAKNSKKPAHENQQGEESQGQNSVVTDKGL
FT                 QVLLEKYTPPRPGVCYNCRLSGHHQSDCDRPKHKFCFRCGFLNFDTKNCPF
FT                 CAKNA"
FT   CDS           2349..5495
FT                 /product="Gypsy-339_AA-I_2p"
FT                 /translation="MEAQNIFKSPSKPDCIVCSLGQRQVDDDEYRHCSSVE
FT                 ISEHFLKIENDDRPFVRVNIMNVPLIGLLDSGANRSILGSGSVSLLKSCRL
FT                 RIQPVNIDVCTASGQNLDVSGCVELPVTFRGMTKILSALVIPSVKRKLILG
FT                 SDFWRSFGIVPTMATNDTTISVDELEDHEEESVLSNEQKKQLDEVKLLFKP
FT                 AIDGKLDMTSMISHRIELSEEARKLPPVRINPFPTSPNRQDKINKELDNML
FT                 QCGIIERSYSDWALRLVPVDKPDGSVRLCLDARKLNERTVRDSYPLPHADR
FT                 ILSRLGPSRYISTIDLSKAFLQVPLHPRSRKFTAFSVLGRGLFQFTRMPFG
FT                 LANSPATLSRLMDRVLGGSELEPNVFVYLDDIIVVSNTFEEHLDRLKELAR
FT                 RLRAANLSINLEKSKFCVPEVPYLGYILSRSGLRPNPDRVEAIVNFERPKS
FT                 LRALRRFLGMSNYYRRFIATFSEIVRPLTDLLKDQPKIIKWNDGAESAFVK
FT                 IKELLISAPILSNPDFSKPFSIHCDASDSAIAGVLMQWHGDMEKPVAYFSQ
FT                 KLGSTQQRYAATEKEALAVLKSLEKFRCYIEGSRFTVVTDASALTYILRSS
FT                 WKTSSRLSRWSLELQKHDMEVKHRKGVDNVVPDALSRAVEEVSATSDKSDW
FT                 YNFMVQKVQNEPENFKDFRVENGILKKFVSSPECIDYRFEWKVCVPTALRE
FT                 KILFEEHDEALHLGHEKTMARIRKRFYWPHMAKDIKAYVQKCQICQESKPS
FT                 NRSQHPVMGQQRITTKPFQIIALDFIQSLPRSKTGNCHLLVVMDLFSKFCL
FT                 LFPLRKISTSQVNKILEDSWLRRYAVPECLISDNASTFLSKEFKALLEKYR
FT                 IQHWTNSRHHCQANPVERLNRTINACIRTYVRTDQTLWDTRISEVEHVLNT
FT                 TPHSSTGFSPYKVIFGHEALERGDEHRVDRDEEEISDQKRLENKLNIDQSI
FT                 RDLVVKNLHKNYTKNSHYYNLRRKQPAPVYKVGQKVLKRNFKQSSAVDRYN
FT                 AKLAPCYIPCLIKARVGTSSYDLIDEEGKALGIFSAADLKPRT"
XX
SQ   Sequence 6142 BP; 1859 A; 1273 C; 1446 G; 1564 T; 0 other;
     aattggcgcc cagcataaaa actagaataa caaattttct gaatcggttg caatatcttt        60
     ccaaacccgt gagagggagg aagaaaacag cataaactgt tttagtgtgt tgcgttctct       120
     gaacgacaaa taattaggtc tttttcaatt tgcatgctct tattttgatt taattccatc       180
     gggacacccc cggtgtgatc attatacttt ttgttgattt tgttgcatgt ttacttttgt       240
     tgttggatta gttaattgag atttttatgt tttttaggca ttttatcgga attttcggcg       300
     gtgcagaagc tgttcaggag gtaaagtgtg agccctagaa tcacagtggc taattttaaa       360
     accgtcctgg agtccgatta aggcaaatcg cgactgagaa gggtgagtac agctggatat       420
     aagagtgagt ctggataggg cacagacgtt gatctggtcg tgattcgaac actctctaca       480
     acctgaacac ttctacaaca cgaaagattc ttggccatgg agtcagaaat tcagatcaag       540
     tataggactt tgctagttca tcatttagat aaagaggaag tcgagtttga actggacgtg       600
     cgagccgtac agttcgagaa tacggaatct gttggggttt tgagaaggcg tttgagagaa       660
     gctttgaagg ataaaggtga acaggttgaa gtggattttt ccaaatgcaa caatcgcacg       720
     gtcgatggag aaattaagtt gatcgatcag aatgtagaag aaattaggga tattttagag       780
     aagaaaaaga gtttcgaggg ggtaaaggat tcactgaaga cccgcttagt acattatttc       840
     gcgcggtgct tggccgttca aagagtggct gaagaagacg cggatttaga agatctagac       900
     aaacttctgg gtactgttcg tcagttatac aacacgtact tcacgttatt cacgcccatt       960
     gagtctattc gcaaagaagt tatgctccaa atttccaatt ctttaaccca gctgcatttg      1020
     gctcagccaa gcacgtctgg agttgcaaga caggtccaga gtagatcgca agaaacccaa      1080
     acggaggacg atttgtgctc tcatgaagac gatagatcga ttcaggctaa cgctagaact      1140
     acaccgtcta gacggcagct aaaatcaaat atagtgccta cgatggagtt aacatcatcg      1200
     cttaattttc catcgatgat gtcacagcca tcgggatcag ggatgaactc ccgccgatcg      1260
     ggtgaagaga gaattttaaa tcgaatcgat ttgtcgggga aaggtcggag accgacaggc      1320
     aaagaggaga cttcagagag aggcacggat tcttcctcgt cacagtctcc accaagtaga      1380
     cgtaggtcca ggcaacgaag gtctaatgtg aagcgaagta gaccggtttc ggattggaac      1440
     ttacggtacg acggtagaga tgggggacaa ggtttaatgc gtttcatcaa ggaagtggaa      1500
     ttttatgcca aatcggagaa catttccgaa aaggagttgt tccgctccgc aatccatttg      1560
     tttgcgggcg cagctaaact atggttcatg tccggggttg aaaacggaga cttctcttca      1620
     tggaaggact tagtcactga aatgaagcga gagtttctta gtccagatca tgaccatgtc      1680
     agcgagttta gagcaattga aaggaagcaa agacccaaag aaaaatttca ggatttcttc      1740
     tttgatatgc agaaactttt taatgcgctt acaaaaccga tttccgagcg aaagaagttt      1800
     gagattgtct tccgcaacct cagagcggac tacaaaggct atgtagttgc tgccaatatc      1860
     gataatttag cagacttgaa accattcggt cgcaaacttg atgccacgtt ctggtacaag      1920
     tatgagaacc ggaatacgga agataactcc tccaaaaacc ggaatcaggt tagcgaactg      1980
     aaatcaaact ctaaaccaaa acagacagga ccaatgaatc gccccgacaa aatgcgaacg      2040
     gaccaaaaac ctctcagtaa gcctgaggag gcgaaaaatt cgaaaaaacc tgctcacgag      2100
     aatcagcaag gtgaggaaag tcaaggacaa aatagtgtag tgaccgataa aggcttgcag      2160
     gtccttctgg agaaatatac ccctccgaga cctggtgttt gttacaattg tagactttct      2220
     ggtcatcacc aatcggattg tgaccgtcca aagcataaat tttgctttag gtgtgggttc      2280
     ttaaatttcg acacgaaaaa ttgtccgttt tgcgcaaaaa acgcctagat acccgtctga      2340
     aggggcagat ggaggcacaa aacattttta aatcccccag taaaccagat tgtatcgttt      2400
     gctcacttgg tcagagacaa gttgatgacg acgaatatag acactgctcc agtgtggaga      2460
     tcagtgagca ttttctcaaa atcgaaaacg acgatagacc cttcgtaaga gttaatatta      2520
     tgaatgtacc cttaatcggc ttgctcgata gcggagcaaa ccggagcata cttggttcgg      2580
     ggagcgtttc cctactgaaa tcatgtagac tgcgtataca gcctgttaac atcgatgtct      2640
     gtaccgccag tggtcagaat ttggatgttt cgggatgtgt tgaactgccc gtgactttca      2700
     gaggcatgac gaagatttta tccgctctgg tgatcccttc cgtaaagcga aaactgattc      2760
     ttgggtcaga tttctggcga tcatttggta tagtgcctac catggccacc aatgatacga      2820
     caatctcagt tgatgaattg gaggatcacg aagaagagtc agtattgtct aacgaacaaa      2880
     agaaacagtt ggacgaggtt aaactgttgt tcaaacctgc gatagatggt aaactcgaca      2940
     tgacgtcgat gattagtcat cgcatagagc tatcggaaga agcccggaag ctccctccgg      3000
     tgcgaatcaa tccgttcccg acctctccaa atcggcaaga taagataaac aaggaacttg      3060
     acaatatgtt acagtgcggc attattgaac ggtcatacag tgactgggca ctccgccttg      3120
     tacccgttga caagccggat ggatcggtac ggctgtgcct agatgctaga aagctcaatg      3180
     agcgaactgt ccgtgactcc taccctctcc cacacgcaga tagaatcctg agccgtctcg      3240
     ggcccagtcg atatatttca acaatagact tgtcaaaagc ctttttacag gttccgttac      3300
     acccacggtc ccgaaaattt actgcgtttt ccgtgctggg tagaggtctg ttccagttca      3360
     ctcggatgcc ttttggtttg gccaacagtc cggcaaccct ttcaaggctg atggaccggg      3420
     tattgggcgg gagtgaactg gaaccaaacg tttttgttta cctcgatgac atcatcgtgg      3480
     taagcaatac gtttgaggag cacttggaca ggctcaagga gctggcacgc aggcttagag      3540
     ccgcgaattt gtccataaac ctggagaaat caaaattttg cgtacccgaa gttccctatt      3600
     tagggtacat tctaagcaga agtggacttc gtcccaatcc agatagggtc gaagccatcg      3660
     tcaatttcga aaggcctaaa tcactccgtg cactgaggag atttctgggc atgagcaact      3720
     attatcgacg gttcatcgcc acttttagtg aaatagtgcg ccctttgacc gaccttctta      3780
     aagatcaacc caaaattatc aaatggaatg acggtgctga gtcagcattt gttaaaataa      3840
     aagagctgct catcagcgct ccgatattat caaatccgga cttttcgaag ccattcagca      3900
     tccactgtga tgcaagcgat tcggctatcg ccggggtgct gatgcaatgg cacggcgaca      3960
     tggagaaacc tgtggcctat ttttctcaga agttaggatc tacacaacaa cgctacgcgg      4020
     ctaccgagaa ggaagcacta gcggtgctga agtctctgga aaagttccga tgctatattg      4080
     aaggttcgag gtttacggtg gtcactgatg cctcggccct cacatatatt ctccgaagca      4140
     gctggaaaac ttcctccagg ctgagcagat ggagccttga acttcaaaag cacgacatgg      4200
     aagtcaaaca ccggaaaggt gtggataatg tggtgcctga cgcactttcc cgagctgtgg      4260
     aagaggtcag tgcaacctct gataaatccg actggtataa ttttatggtt caaaaggttc      4320
     agaatgaacc agaaaacttt aaagatttca gggtagaaaa tggtattctg aagaaattcg      4380
     tctcgagtcc agaatgcatc gactatcgtt tcgagtggaa ggtttgcgta cccaccgcat      4440
     tacgagagaa gattcttttc gaggaacatg acgaggcctt acatttggga catgagaaaa      4500
     ccatggcgag aatccgcaag aggttttact ggccacacat ggcaaaagat atcaaagcct      4560
     acgtccagaa atgccaaatc tgtcaggaaa gcaaaccgag caatagatcc cagcaccctg      4620
     tgatgggaca gcagcgtatt acaacaaagc ccttccagat aattgcactg gacttcattc      4680
     agtcgcttcc taggagcaaa actggaaatt gccacctcct tgtagtgatg gacctatttt      4740
     ctaaattctg cttgctattt ccattgcgta agatctcgac ttcacaagtc aacaagattt      4800
     tagaagacag ctggttacga cgttatgccg tgccagaatg tcttatatct gacaacgctt      4860
     cgacgttttt gtcaaaagaa tttaaagctc ttcttgaaaa atatcgcata cagcactgga      4920
     ccaactcgag acaccattgt caggccaatc ccgtcgaaag actcaacagg acaattaatg      4980
     cgtgcattcg cacctacgtc cgaacggatc agactctttg ggacacccga atttctgaag      5040
     ttgagcacgt tctgaatact actccacata gctcgacagg tttttcacca tataaagtca      5100
     tttttggcca tgaagcatta gagcgaggcg acgaacatag agtcgatcgg gatgaggaag      5160
     aaatttcgga tcagaaaaga ttagaaaaca aattgaacat cgatcagtct attcgtgacc      5220
     ttgtagtcaa aaatttacat aaaaattaca ctaaaaattc acactactac aatctgcgtc      5280
     gaaaacaacc ggcgcctgtg tacaaagtag gccaaaaagt cctgaaaagg aacttcaaac      5340
     aatcctccgc cgtagacagg tataacgcaa aacttgctcc atgttacatc ccgtgtttga      5400
     tcaaggctcg ggtgggaaca agttcgtatg acctcataga tgaagaagga aaagcactcg      5460
     ggatcttctc tgccgccgat ctgaaaccgc gaacctgaaa cgaaagattc aaacaaagtt      5520
     aagttctctc aaactaatag caaattcaat tttgtcaaca cggagttgac gtgaaatata      5580
     aaggaatact tagcctgata ggtgaatagg ttttttcctc gggactgcag accgggggga      5640
     agctgaaaag aatgaaaaaa aaaaattcaa tgtaacttgc gtaggtcgat ttaaaaccag      5700
     taggcatgaa ttgtaggaaa gaagtactta ccaatggtcc aaaaccactt gatccttgga      5760
     atttgatcca tgatggtctc caactcaaaa gcagaatggc aacaaaaccg acaaatgatt      5820
     tgaatagcgg agattcgtcg ttttagagct caaaactgat tacttttcct tgtatcgatt      5880
     tgttttgatt cgaaagcaag ttagatagtg agaaggacaa tgattgacag ctggaaggta      5940
     actcacctat gttgagttcg tggaagaagt agggtaaaga tccatgtatc agtcgcaatc      6000
     ttcgatcgtc gacgatgaga aggaagagca gaaataaata ctaatcgagc atgttatttt      6060
     tttatgccgg ttgaaaaggc aagttttgtt atctccatag cgaaaataaa ctagtcattt      6120
     tcgcagccgg tcggagggat at                                               6142
//
ID   Gypsy-339_AA-LTR repbase;    DNA;    INV; 1546 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-339_;
KW   Gypsy-339_AA-I; Gypsy-339_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1546
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1546
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 200-200 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1546 BP; 459 A; 313 C; 311 G; 463 T; 0 other;
     tgtaaccgat ggttccaaat ttagacttgt ggctccacca caaatttact ttcccaattc        60
     cttttcccgg attttccata aatacgccct ttggaacaaa aacctcttgt cgacattggg       120
     gcactcattt actggattgg tgagtgagtg agcttgtctc gctctcctgt tactgtcaat       180
     ggtgagtggt tctctgattg agtagtttga gatggggggg gcaaaacatt acctcgcctt       240
     tttcgtattc gtagatagag ggagcgcacc actatgacgt aatagggtgt gatacaaaag       300
     attgcacaaa tggtcaacaa gtaagatatg ttgagcattt ggaccgattc atataaaaac       360
     cccaagtttt ggagcaaaga tcctcttttt gctgtgaata ctggaacgta gtagtagtgc       420
     gcgcgcgtgt agcatttaat agaattgagg ttagcgttga taatgcctca ttttagtgga       480
     attattgtta attagtgttt tctctcttct tttagtagtg gttagtaagg ttagacatgc       540
     aacattgaag ttaaaaagaa cagttagtag tacaaaaagt gtgttagtag tacaaaaaac       600
     acttggttag taagttaaaa tgttaataat ataccaaaac taatgtgtgt taaaatctta       660
     tagttgctaa gtataaatca tgcgtcgaaa caatcgtgtg agaaataatt cgtaaaaacc       720
     tacaagaaaa ggtaatgttc attgtaaatt gtatataata tatgtgaatt attagaggtt       780
     aaattggagt gctaatgctt ggtggttagg tccacacatt gggccttttc tttttatctg       840
     tggccttttt ggcagaacca cgacagttag tgcggagtgc gcgtccatct tgaagtccag       900
     tccagcagaa agtagaaggg tgtaaaccgt tactacttta cacggttagc gtcccaaaac       960
     cgccatcttg ccctaccttc aggattcatc aaggccaatg agtccaactt cgataagcca      1020
     accacattct gcacaagccc gatgatgagc ggactgatca cccgctcgtc gatacccgtc      1080
     aagccgttca accaccaaca caccagcagt tctacaacag cccatcagag cacatccaaa      1140
     accgcaagta aaaccaccca aaatgtgacg tcacaataaa taattgtaat aatgagattg      1200
     catttagtgt actttataga agagtgagtc cctggttaat agtttgtcca ctacttcttt      1260
     gtttgttcgt ccaccgggtt cacaaaggaa ccatcaagcc tcgacgtctc agtatctcca      1320
     cattaggtgg aaaattgtct ttaaaactta tttggtatca tttttgtttc atttccgtat      1380
     tcagctgtat gtgtgtgttc ccactatcaa attaaataac cgttctccta cacatatcag      1440
     tacctccaac cataagcagt gcagccagta cagtgaaatt aagttctagt cacgtttaac      1500
     gaccctgaag atcccaaaac ccttatccct gagcgagcag gttata                     1546
//
ID   Gypsy-33_AA-I repbase;    DNA;    INV; 7805 BP.
XX
AC   supercont1.283;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_AA_;
KW   Gypsy-33_AA-LTR; Gypsy-33_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7805
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.283; Positions   20927   28731.
XX
CC   Positions [3754-4179] - Reverse transcriptase
CC   Positions [5239-5715] - Integrase core
CC   'CAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           827..2989
FT                 /product="Gypsy-33_AA-I_2p"
FT                 /translation="MAEARSDEYTRAVERIREWYHHLRVDHLSTDELDFEL
FT                 NIRSIVIREDPTYSRRRRSLREHLKAEKSQKAIIEVELEVDWEETLRFCRQ
FT                 NYEEIYAGLQQNDRNLKTRGQAKLLHFGHRIVLLLKRAEGEAESFLKAMLI
FT                 DVVRLLDHYFYSEPEASGAGLREILGDQDLLDLFRPEDDAVAPMHQNVASG
FT                 NQAANTERPESTTSVLEALLSRINELAVELSKRDKPNGESQNRESVLPSGS
FT                 QQLSANSQLYNEFSSFVPISLPSSSLQSQTISSASMGIPSRPVTSVTFSLP
FT                 QSNSTSQPQTSSSFQNHFLKNPSFQPSSSAHTCNPGWGIPSSGSVPPLGQW
FT                 HGASAVYNAPNSNPWQGNLAPGFQQAFHPWAGTAIPFSNPSSNPSFSPFNS
FT                 VRPGNQVRHTLPVSKWTITKYDGEDQGLKLNQFLGMVHAMSVAEQVSEHEL
FT                 FESAIHLFEGPAMQWYMTMRASNRLMNWQHLVFELRRTFMHPDLDTLIKMK
FT                 VYQRHQSRNETFLQYYHAMEELFGTMSVPLPEYEKVQILLQNMRLDYKRQL
FT                 NFLPISDLPTLVSAGQKIDAVNFSVYNKVFGPERSVNAVESVDSDTKSKKG
FT                 FSKDKQNKPSTTAQQFPPSCNTNTYPPQSRQQQNSSQTGTNPSRVPTRPPI
FT                 TLEEIIDSHQPLSGRHCFNCGKFGHRMDRCDLPKGVLCANCGFRGYPTNNC
FT                 PYCIKNAIAASQNRRPLNPNF"
FT   CDS           3301..6093
FT                 /product="Gypsy-33_AA-I_1p"
FT                 /translation="MVKVVPTLVVPYLAINCICGMDFWKAFHIQPTITGCA
FT                 MVENIGDDSNLELPSSSSVLTASEQQTIDHVKTLFIAARPGKLSTTPVAEH
FT                 KIEIAEEWRKKPPVRQFPYVMSPKTQGLVSVELQRLLDAGIIEPSNSDWSL
FT                 NCVPVIKPHKVRLCLDARKINERTVRDAYPLPHPCRILGQLPKAKYLSTID
FT                 LSEAFLQVPLEKSSRKYTAFSVQGKGLFQYTRMPFGLVNSPATLARLMDRV
FT                 LGHGVLEPYVFVYLDDIVVVTETFEHHVQLLREIARRLNRANLMINIEKSQ
FT                 FGVPEIHFLGYLLSPEGLRGNPDKIRPIVEYERPTTITKLRRFLGMANYYR
FT                 RFIPNFSKTCEPLSDLLKSKTKIIGWNEAAERAFCLIKEQLISTPILGFPD
FT                 FSKEFVIQTDASDVAVAGVLTQQQEDGERVISYFSRKLTTPQKNYHAAEKE
FT                 ALAALLSIEAFRGYIEGYHFTLVTDSSALTHILKTKWKVGSRCSRWSLDFQ
FT                 QYDMTVVHRKGKENVVPDALSRSIAVVQVSSTSPWYTSLMEKVKNNPDDYV
FT                 DFKVEDGRLFKFIVAKNIPFDSRFEWKQVLSTDEIPEILKSVHDDQFHPGY
FT                 EKTLARVRQRYYWPKMANDIKVYIQACSTCKEVKPSYVQTTPEMGKMRCAS
FT                 RPWQIISLDFVGPLPRSRRGNQHILVICDYFSKWVMIHPVKKLDSSTMCVI
FT                 LKNQWFYRNSVPETIITDNGSTFVSKEFKELLDHFKITHWLNSRYHSQSNP
FT                 VERVNRTINAAIRTYVQEDQRAWDTKIPEIELMLNTSVHSSTGFTPFFITH
FT                 GAELAEQGSDHRLARHGKELSVEEREERQKQMFTKIHEIVRQNLEKAHNVS
FT                 RDRYNLRNRTFAKSFSVGQLVYRKNMKQSSAVDNYNAKLGRQYLPCKIKAK
FT                 IGSSSYELEDLTGKNLGIWPAVHLKPG"
XX
SQ   Sequence 7805 BP; 2245 A; 1712 C; 1631 G; 2217 T; 0 other;
     attggcgccc aactaaaaag taaaaagaaa aggtttccat tttattctta aagtggaacc        60
     cttttcaaga aagctccggg aggaattgga atccattatt cccaattgtt ctttaaagaa       120
     aagagattga attgtatcga aatagtattg ttttcagtga aagtgaaaat ctattggaag       180
     tgttcggatg atgagaattt ctggtattgc tattatagtt cgttcttttg aatcagcttt       240
     agaattttaa ccttttgttc tagataaagt gcctgaatca aattagtgaa ttagcagatt       300
     aaaacaaata tttagtgact tagtttcatt tttcattaca cagtgcttca ataatttttt       360
     tttcacaatt attttttttc gtgatttatt tatttttata tttagtgttt aatttagtgg       420
     atgttagaat aagctagttc ttgttctctt tccattcctt tttgcattta ttttttttgt       480
     aaatttatta gctatcttga tttatgaata cctaatttta gctacttttc cgcataattt       540
     aaagcgaata ttagcttttt agtttaatta ggtgttattt gggtgaactt taaaattttt       600
     attatgcttt ttttcctatt gtagcatatt tttaaggaat aaaagctctc ttatataatt       660
     tagttaatac tttagataat tatctttatc tttcattatt atttttttaa atttgtttgt       720
     ttttgttatt ttttattttt atattacaat ttatttcttt agttgataat tttcttgaat       780
     atttttcttg attttttttc tattttaata acctttttgt ttgaaaatgg ctgaagcacg       840
     tagcgatgag tacacacgcg cagtagaacg aattcgtgaa tggtatcacc atttaagggt       900
     ggaccatttg tcgaccgatg agcttgattt tgagctcaac atccgctcaa ttgtaattag       960
     ggaagatcca acctattcgc gaagacggag gagcctacgt gagcatttaa aggctgaaaa      1020
     atcgcaaaaa gcgattattg aggtagaact tgaggttgat tgggaggaaa cacttcggtt      1080
     ttgccgacaa aattacgagg aaatttatgc gggcctccag cagaatgatc gtaacctaaa      1140
     aacaagaggt caagcaaaat tgttacattt cggtcatcgg attgttcttt tgttgaagcg      1200
     tgcagaaggg gaagcagaaa gttttttgaa ggcgatgctt attgacgtgg tgagactatt      1260
     agatcactat ttttattcag aacctgaggc atcgggagcg ggtcttcgag agatactggg      1320
     ggatcaagac ttattagatc tgtttcgccc tgaagatgat gctgtggccc caatgcacca      1380
     aaatgtggca agtgggaacc aagcagcgaa cacggagcgc ccagaaagca ccacttcggt      1440
     gttggaagct ttgctgtctc gtataaacga gcttgcggtg gaattgtcaa aacgggacaa      1500
     gcccaatgga gagtcccaga atagagaatc tgtgcttcca agtggaagcc aacagttgtc      1560
     ggcgaactca cagctttata atgagttctc ttcatttgtt cccatttctc tcccctcaag      1620
     ttcactgcaa tctcaaacga tcagctcggc tagcatgggt atcccttcaa ggccggtcac      1680
     tagcgtgact ttttcactac cgcagagcaa ctcaacgtca cagcctcaaa cttcttcatc      1740
     gtttcaaaat cactttttga aaaatccctc gtttcaaccg tctagcagtg cacacacttg      1800
     caaccctgga tggggaattc catcttcagg aagtgtaccg cctctaggtc aatggcatgg      1860
     tgcttccgca gtttacaatg cgccgaattc taatccttgg caaggaaacc tagctccagg      1920
     ctttcaacag gcgttccatc catgggccgg aactgcgatt ccattttcta atcctagttc      1980
     taatccatca ttctctccct tcaattccgt tcgtccaggt aatcaggtgc gccacacctt      2040
     acctgtgtct aagtggacga taacgaagta tgatggtgaa gaccagggtt tgaagttgaa      2100
     tcagttcttg ggaatggttc atgctatgtc ggtggctgaa caagtttcag agcacgaatt      2160
     attcgaatcc gcgattcacc tttttgaggg gccggccatg caatggtata tgaccatgcg      2220
     cgcctcgaat cgtctcatga actggcagca tttagtattc gagctcagga ggacattcat      2280
     gcatcctgat ttagatacat tgataaaaat gaaagtttat cagcgccacc agtctagaaa      2340
     cgaaactttc ctgcaatact accatgccat ggaggaactt tttggaacta tgagtgttcc      2400
     attgccagaa tatgaaaaag tacaaattct gctgcaaaat atgaggcttg actataagag      2460
     acagctcaac tttctcccga tatccgacct cccgaccctc gtgtccgccg gtcagaaaat      2520
     cgatgctgtg aatttctcgg tttacaacaa ggtttttgga ccagaaagat cggtgaacgc      2580
     tgttgagtca gtagattccg acacaaagtc gaagaagggg ttttcgaaag ataaacaaaa      2640
     taaaccttcg acgacagcac agcagttccc acctagttgc aacaccaata cttatcctcc      2700
     tcaatctcgt cagcaacaga acagttccca aaccggaacc aatccctctc gtgtcccaac      2760
     gcgtccacca atcactttgg aagaaattat cgattcccat cagcccctat ctggccgaca      2820
     ctgctttaat tgcggtaagt tcgggcatcg aatggatcgt tgtgatcttc caaagggggt      2880
     cctttgcgcg aactgtggat ttcgagggta tccaaccaac aactgcccct attgcataaa      2940
     aaacgcaata gcagcgagcc aaaaccgccg cccgctgaat ccgaacttct aggcgtattt      3000
     cccccaccgt gttttgaacc ggctacgagg aatctctatc cggtatctcc cgcttcgttt      3060
     acgatttcat atccatttcc taacgataat cgtccctaca cgtcagtgaa agtttacggt      3120
     gtcaactttc gggctcttct tgacagtgga agcaacctca ccctgatcaa tgaatccgtt      3180
     tacaattcca ttaaaccaaa gcgcatcttt ccgcttcaaa acccagtaaa tctgcgcact      3240
     gcgagcggag aaagactcag tgttcgcggg cagatttatt taccattttt atggaatggc      3300
     atggtcaagg tcgtccccac tttagtggtt ccctacctgg caatcaactg tatctgtgga      3360
     atggactttt ggaaagcctt tcacatccaa cctaccatta ccggttgcgc catggttgaa      3420
     aacataggag acgactcaaa tcttgaattg ccatcctcat cttctgtgct aacggcttct      3480
     gagcagcaaa cgatcgatca tgttaaaaca ctgttcatcg cagctcgccc cgggaaattg      3540
     tccactactc cagtggcgga gcacaaaata gaaatcgccg aggaatggcg gaaaaagcct      3600
     ccagtgcgac aattcccata tgtaatgtcc cccaaaacgc aaggattagt gtcggtggag      3660
     cttcagagat tgctcgatgc tgggataatc gagcccagta actcggactg gtcgttgaac      3720
     tgcgtgccag ttataaaacc tcataaggtt aggctctgtt tagatgcgcg taagattaac      3780
     gaacgtactg ttcgtgatgc ttaccccttg ccgcacccct gtcgtatact tggccaactt      3840
     ccgaaggcaa aatatctttc gacaatagat ttgtcggaag ccttcctaca agttccgttg      3900
     gaaaaatcat cacggaaata cacggccttc agcgtgcagg gcaaggggtt gttccagtac      3960
     acaaggatgc catttggtct agtgaacagt cccgctactc tagcaagatt aatggatcgg      4020
     gtacttggcc atggtgtact ggaaccctat gtcttcgtct atctcgacga tatcgtcgtg      4080
     gtgacggaga catttgagca tcacgtacag ttgcttcggg aaattgcgcg tagactgaac      4140
     agagccaacc tgatgatcaa cattgagaag tctcagttcg gggtgccgga aattcacttc      4200
     ctaggatatc ttcttagtcc agagggcctt cgtggaaatc ccgataaaat tcgaccaata      4260
     gtcgagtacg agaggcccac tacgattacc aagctaagaa gattcctagg aatggcgaat      4320
     tattaccggc ggtttatccc gaactttagc aagacttgcg aaccactgtc ggatctcctc      4380
     aaatccaaaa ccaaaataat tggttggaac gaggccgcgg aaagagcctt ctgcttgata      4440
     aaggagcagc tgatcagcac tcctattcta gggttccctg acttctccaa agagttcgtc      4500
     attcagacgg acgcaagcga cgtggcggtt gctggagttc tcacacagca acaagaggat      4560
     ggtgagaggg ttatttctta tttttcccga aagctcacca ctcctcaaaa gaattaccac      4620
     gccgctgaga aggaggccct agccgcgctg ctctcaatcg aagctttccg ggggtatatt      4680
     gaaggatacc acttcacctt agtgacggat tcgtcggcac tgacccacat cctcaaaaca      4740
     aagtggaaag taggatcacg atgcagtcga tggagcttgg actttcagca atacgacatg      4800
     acagtagtac atcggaaagg caaagaaaat gtcgtcccgg atgctctgtc acggagcatt      4860
     gctgtggttc aagtttcatc gacttcaccg tggtatacct ccctgatgga gaaggtaaag      4920
     aacaaccccg acgactacgt cgacttcaaa gtcgaagatg gtaggctttt taaattcata      4980
     gtggccaaaa atataccatt tgactcgcgg ttcgaatgga agcaagtcct ttccaccgac      5040
     gagattcccg aaatcttgaa atcggttcac gatgatcaat ttcatcctgg ctacgaaaaa      5100
     acgctagctc gcgttcgtca acgctactat tggccaaaaa tggccaatga cattaaagtc      5160
     tacatacagg cttgctccac ctgcaaagag gtcaagccgt cgtatgtgca gacgacccca      5220
     gaaatgggca aaatgcgctg tgcatctcga ccatggcaga taatttccct ggactttgta      5280
     ggtcctctgc cacgtagtcg gaggggaaac cagcatattc tggtaatatg cgattatttt      5340
     tccaaatggg taatgatcca tccggtgaag aagctggata gttcaaccat gtgtgtgatt      5400
     ttgaaaaatc agtggttcta caggaactct gtccctgaaa cgataataac ggacaatggt      5460
     agcacattcg tttccaaaga gttcaaagaa ctgttggacc acttcaaaat cacacactgg      5520
     ttgaactccc gctatcattc ccaatcaaac ccagtggagc gtgtcaatag gacaataaat      5580
     gcggcaatcc gcacatacgt ccaagaggac cagcgcgcat gggacacgaa aatccctgaa      5640
     attgagctga tgctcaatac aagtgtccat tcctccactg ggttcacacc ctttttcatt      5700
     acgcacggcg cggagctagc ggagcaggga tccgatcacc gtctcgcccg tcatggcaaa      5760
     gaactatctg tggaagagag ggaagaaagg cagaagcaaa tgttcaccaa gattcacgaa      5820
     attgtccgtc aaaacctcga aaaagcccat aacgtgtctc gggaccgtta caatttgcgg      5880
     aaccgtacgt tcgcaaaatc cttctcggta gggcaactag tctaccgaaa gaacatgaaa      5940
     caatcgtcgg ccgtcgacaa ctacaatgca aagttggggc gacaatactt accgtgcaaa      6000
     atcaaagcta aaataggctc ttcttcctac gagctggaag atctgaccgg gaaaaactta      6060
     ggcatttggc cagctgttca cctgaaaccc gggtgatacg gacaatacaa aatcttgggg      6120
     aacatttgca ctgctccctc tcttcaccgc ttctgcatca aatcacctga aaagacaatt      6180
     actaccgaag aacattcaat gcttacccgt ttatttacat tatttcattc ttaattggtt      6240
     tcaattcatg cctgccctgc cctcgtcgtc gtcagataaa ctgttgttgt tttgatttct      6300
     cctcctcatt ctcattattt tcatcagctc cgttttctca ctctctgttt acattttctg      6360
     ggagatttta ccagagtcaa attcaggggg ttgtttacca gcaaaataaa agctgcccaa      6420
     ggtagttaca ttcctacctc tgaaatcgta acgctcgagg ggtctattgc gacgaagcta      6480
     gacccccaaa aataattagg atagggatcc ctaaaattac aaataatatg tcgtagttta      6540
     aataataaaa tgcgtgtgta cgtaaaaaaa tgttgttcct ggtggatctt gttttagcca      6600
     gacaactgta tgaatgtaac gagtgaatga atgaatttgt atgaatgttg ggggaataaa      6660
     tggatgtgtg agtgaagaat attttttttc ccccgaatca atttttcggt gattttcgaa      6720
     aacaaaatga agaggtttca aaatgtttat tttctcttct aattgtaagc tagttttaag      6780
     ggtagtagta gctagtttta aaaataaagt ttaatttcta atgttgatgg aaagaggatg      6840
     gacaagatcc gatttattct gacgaaccat ttttctataa ggctgaattt tcctatttca      6900
     tatactattt cgatacaaat caaacattta gctcctattt ccgcttatga taattaggga      6960
     gtatagtggt caggctcgcg ctgcagtttt atgtaatttg aaggaaaaga gcctccacta      7020
     gtgatcaatc attgcttcaa attataactt aaactgcagg ggtagagagc cactgtagga      7080
     gaactaactt tcagggaatc tatcacgaat ttaagaactg attcgtccat ttcttcaatt      7140
     cgatcatgga tcgtgaaagt tagcctctcc cggtaattcc ttcaatcttg gagatgacaa      7200
     ctaatctcga aaagaagagc tcccattgag gaaacaatca cttttccaga ttgggtgtca      7260
     cctacaagag aaaaaggttt accgctacct aattatccta atatgaggtg ggaatctact      7320
     ggcagccaga ctctatggct gaaagttacg tgatttggtt ggaaagagct cctctctaca      7380
     cggaaaaatc atccaattaa atcaaattaa cagtcagcta aaagagagct gccaagacaa      7440
     gaactcctaa atcgaccctc tcctagtgga cagactctat tattaagtgt tacgtgattt      7500
     tgtgaaatag agctcctctc catggaaaaa tcatttcaca aaatcaatct aacgcttaac      7560
     aagaggaggg ccacacttac cccatacttc ctacttcctg aacgacttcc ttcccagtgg      7620
     acagtctcta ttattgaatg tttatcgatt tagcgggaaa gagatcctct gtatggaaaa      7680
     atcattccgt taaatcaaag aacattcaat aagaggaggg ccaaaaaaaa aatccttaca      7740
     accccaaccc catctccacc taccaaaaaa aaacaaggtt tttttttatc ggagcgaggg      7800
     atgaa                                                                  7805
//
ID   Gypsy-33_AA-LTR repbase;    DNA;    INV; 1045 BP.
XX
AC   supercont1.283;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_AA_;
KW   Gypsy-33_AA-I; Gypsy-33_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1045
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.283; Positions   19882   20926.
XX
SQ   Sequence 1045 BP; 295 A; 236 C; 204 G; 310 T; 0 other;
     tgtaaccttc aaaaggttac attatcttta tatatatttt tgtacatata ttttcctttt        60
     ttttattatt actatttttt ttactatgtt tattattatg atctcacggt tttgttaata       120
     gaaggtattt aaatgaatta atgaattaaa atgaaataga actaaaatga aattaaaaaa       180
     aaaaaaatat cgaattttcc attcctcctg aacatcccta ttatccaata ccctatccaa       240
     ccgtaacgca cccacacaac gacaccaacg atcggtgtcg gcaatacgtt cgtcgtctga       300
     cacacgaaga tgacgacgac gaatcaacaa aactggttgt catccagatt tcagcagcta       360
     ttaggtgaaa caccatcatc accgcaactg tgcgcgaatt ttaatccgat tttaatttct       420
     ttctcagtga acgccttgtg ggactttgct agtccggaat agtttgaagt tcgtgtgtga       480
     agtctagtcg gtgtgccaga agtcgattgg cccggctgtg acgagtgaaa gacattccgt       540
     ggacagtgag aaggtgaagt tgtcggtgtg ccaaaccgtc cgatcgaaat ccagtgaagt       600
     gacaactaga cggagaagcc agcatccggc cccggcgcaa cagcggattg gtgtgaagcc       660
     ctggtcgatc cagtcccgaa gacgatcaac gccccgagac gaaaggctgg cctgtccggt       720
     tcttagactg gtccagacgg atggcgcaac actcgttctg agtatcccgg taaattttat       780
     tccttttcat tcctccccct caaacgatct cgaataatga atttgaatat atagagacaa       840
     gatgtaattt aaatgccctt tattgttgcc tttcatttta taaccgctga gccttgtttt       900
     ctaccatctt ttgtgcgtag tccacctcgc tcttttacgg gaaggttttc cgccatcacc       960
     caatttcctc accggagtca ttttgtacga ccctgagtct ctaagaaggc cacattaggc      1020
     tggcccaaaa aaagtaattc taaca                                            1045
//
ID   Gypsy-33_AnFu-I repbase;    DNA;    INV; 6592 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6592
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2917-2917 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1533..2858
FT                 /product="Gypsy-33_AnFu-I_1p"
FT                 /translation="MTKIKEYIEKLQLIDSKLQQGTGKHRTCTLTTFKLQA
FT                 AEQFKALKREIEINNQKYSINELIHFNKVAKGIFTNINTRIEVEILNNSLE
FT                 TPTVKESSTTEEEEESYASNSSLISHKSKDINMAQFDVKKASAIVPTYNGS
FT                 AEDLGAFISAVELMKELNPDNNETTLVKFIYTKLTGNARIGLQLNLTTIND
FT                 LVADIKSRCEDKTNPLKILADLKSIKTRESVKLCKEVELLTFKLKGLYLQQ
FT                 SIPEKVANDMALQAGIDTLINKVTNSDARNALISGNFTAISSATQKVTECE
FT                 GRNNTNQVLTISKTQPRNDQRNRPDRNHGNTGNQHNRYNYNNRIFFNPHRQ
FT                 YNNRNPNQINQNYNRNFANSYQNTNNNNNPRNRAGISNYNRNNQAHGRQNT
FT                 SHVYMTQQNDPNTQHFAQNMQPEYSMSQGREEFLRKSQQDPFLGSNQP"
FT   CDS           2744..6523
FT                 /product="Gypsy-33_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SKYPTFCSKYAARIQHEPGTRRIFEKIPTRSFFRFKS
FT                 ALKVPRQILTIELTGTDYIKIRASFAKNSYCTLIIDTGASISLFKNSKINH
FT                 NQIINNDNNLTLRGISDKLIDTLGYTTSYLNFGNSNVKHNFYLVPDSFGTY
FT                 ADGILGRDFFKQHRCKVDYEFGLLRFNVNGEEIQYPLEDGDAQGFILPTRS
FT                 EVIRRVYLPNIQADSVIFAKEIKSGVFCGNTVINKDYQMVKFINTNNSNVY
FT                 ITKGEFQPKVEPLSNYKIGNNYSVSSQMNTNTRINKLLAKIHIKETPKSEQ
FT                 EKLKRVIMQYNDIFCVDEDPITTNNFYTQEITLKDNIPTYIPNYKQIHSQT
FT                 EEIQKQVDKMLENNIIENSVSSYNSPILLVPKKSSEGDKKWRLVVDYRQLN
FT                 KKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIPLEKNSKRFTAFS
FT                 TQAGHYQFRRMPFGLNICPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCS
FT                 TQHHISNIVKVFDRLRKYNLKLNPDKCSFFKTEVTYLGHKITDKGIYPDDS
FT                 KYEIIKNFPIPTNANESRRFVAFCNYYRKFIKDFAKIAKPLNNLIKKDVKF
FT                 NWTKDCQNAFDTLKQNLLSPTILKFPDFSKQFIITTDASDVACGAVLSQIT
FT                 DGNDYPVVFASKSFTPGEKNKPIIEKELTAIHWAINHFKQYIYGRKFIVRT
FT                 DHRPLVYLFGMKNPTSKLTRMRLDLEEFDFDIEFLAGKANVAADALSRIVL
FT                 NSEDLKASIPKNKEELSTKIMMVNTRAMTRKMNIPRLQKPTTQTGSNYPVV
FT                 WETDRPSETRKFLKIKSSIVDNKIELAIYNNNYKKALGKTIIPIIQNAKNN
FT                 QTLEFALNEISKITKRYKRNKLAISSNDKIFEYFSMQTIKEVANRAISDVN
FT                 IVIFTPTRWIDSQEDRLRIISDYHMTPLGGHIGQYKLCKKLREKYKWHNMK
FT                 ADIRKFVKNCKACITNKTLRHTKEETVVTTTPSKPFNVISIDTVGPLPKTN
FT                 NNNRYAVTIQDELTKYVTIIPIHNKEANTIARALVENFILTFGTFLELKSD
FT                 QGLEYNNEVLTKIAEILKIKQTFATAYHPQTIGSLERNHRSLNEYLRSYTN
FT                 EHHDDWDQWTKFYEFVYNTTIHSTTNFTPYELVFGRQANLPQDIYKTKVDP
FT                 VYNIEQYYYEMRYKMQKSNEIARENLIAAKQKQQQTLNRNTNAIKIKTGDQ
FT                 VYLTNENRSKLDPFYIGPFTVIEIQEVNCKIKHNTTNKISVVHKNRLKLA"
XX
SQ   Sequence 6592 BP; 2707 A; 1160 C; 1108 G; 1617 T; 0 other;
     tggcgaccgt gattttaatc tgcatctccg gatagatggt gatcgagttt aatttcgtga        60
     taacgtgaaa aatgtgttta gtgacataat acactggtgt tgtgctaaat tgtcctcaat       120
     ctagtgagaa gaaaaagtgg agcttttgcg atgtttagtg agtgagaccg aaagaaaaat       180
     taaacaatgg gaaagcatca ctctaagact caaacccagg atggtaacac caatattaat       240
     attgtggaac atctagaaaa taacaatgat cagcatatgg agcatgaggt aaaactttgg       300
     ctgattctcg tactaaacgg aattcaaatc ctgtatatcg gatatcaaga attaaaacga       360
     aagtggagac gacaaggctt caaccgagca atagcctcat cgcgagacaa cctggacagt       420
     attcaaatgc aaaaataaaa acgaaaatga ttgtgcccgg taagctagta aaaagtgata       480
     cccgataata aaccgtttta aactctaaac ccgaaaaaaa aataaaccgt tcaacgcatc       540
     gatgcagtta tgcattaaaa gtgattacta aatggtgcga gtaaagtgat accagagtgc       600
     aataccgtta ggttcaagcg acatacgtaa atgtgtaaat caaaccaaaa acaaaatcaa       660
     aaagaactta cgtacctatt gatgaaatgt tcttattact cgtgaaaatg gtcaatataa       720
     ataagcatcg atgtgtggat agtgaacatt tccagttcat actccaacta gtaccaaaat       780
     gagccacact ctgaagcaat acgactcaga cgaagaggag cgttatctgc tctacgttag       840
     gacgcgatac ggtcctacac acgaggaagt gaacgaacta gcagagcgaa cactgggaga       900
     actgctaagg gcagacagat gcaaattaaa acactggatg gaacagctaa ctggaatact       960
     tctggaatat acgggccacc gaataacaaa aagaaatgcg tttgcaaaat tggtggattt      1020
     gcaatacgcg gccatatcct acacaccgca ataaaagaag aaaaatcagc gacgtctagg      1080
     aaggcgagac cacggatcac aaaagtgacc ggcgggatcc aaagaggcag gagcctccaa      1140
     cgtagaagag catccccaaa tggcgcggac agtgcctcag cagtggagtt ggtgtagcag      1200
     cagtgtcacg gacagtgacc aatgggaata gttacggacg gtaactttac gaagcagatc      1260
     acgattggta gcccaaacca tcaaactgtc acggaccgtg attgaaagta acatatttgg      1320
     gggtgagtaa acaaaaaaaa aaaaacaaaa caaaatagaa gctaacaaaa atttgaaaaa      1380
     aaaataaaag gaaaatataa ataatgtaac ataaagaaac aattcaatcg aattatccag      1440
     tagatttaaa agggtacata tgttgaatga gaaaaaaaaa ggaaattgga agtatatgga      1500
     tgacaaattc ttaaggttta gttctatgtc caatgacgaa aataaaagaa tacattgaaa      1560
     aactgcaact tatagatagt aaactgcaac aaggtactgg aaagcataga acgtgcactt      1620
     taacaacatt taaattacag gcagcagaac agtttaaagc actaaaaagg gaaattgaaa      1680
     ttaacaacca aaagtacagc ataaatgaac taatccattt caataaggtt gcaaaaggca      1740
     tatttaccaa tattaatact agaattgaag tagaaatatt gaataattct ctagaaacac      1800
     ctactgttaa agaatcaagc actaccgagg aagaagagga atcatatgcg agcaattcat      1860
     ctctaatttc acataaaagt aaagacataa acatggcaca gtttgacgta aaaaaggctt      1920
     cggccatagt accaacatac aatggttccg cagaagatct tggtgcattt ataagcgcag      1980
     tagagttaat gaaggaattg aaccctgaca ataatgaaac aacattagtt aaatttatct      2040
     acacaaaatt gacaggtaat gcaagaattg gtttacagtt aaacctcaca acaattaatg      2100
     atctcgttgc agacattaaa tcaagatgtg aagataaaac taatccatta aaaattttag      2160
     ctgaccttaa gtccattaaa acaagagaat ctgtaaaatt atgtaaagaa gtcgaattac      2220
     ttactttcaa actaaaaggt ctttatcttc aacaaagcat accagaaaaa gttgctaacg      2280
     acatggcttt gcaggcaggg atagatacct tgatcaacaa agttacaaat agcgatgctc      2340
     gaaatgcgct tatatcagga aactttacag caatttcatc agccacccag aaagtaactg      2400
     aatgtgaagg aagaaataac acaaatcaag tgttgacaat ttcaaaaaca caacctcgga      2460
     acgatcagag aaataggccc gatagaaacc atggaaacac tggaaatcaa cataacagat      2520
     acaattacaa caatagaatt ttttttaacc cacaccgtca atataacaat aggaatccta      2580
     accagataaa tcaaaactat aatagaaatt ttgcaaactc ttatcaaaat acaaacaata      2640
     acaacaaccc acgtaataga gcaggtatct caaactataa ccgcaataat caggcacatg      2700
     gtagacaaaa taccagtcat gtatacatga cacagcaaaa tgatccaaat acccaacatt      2760
     ttgctcaaaa tatgcagcca gaatacagca tgagccaggg acgagaagaa tttttgagaa      2820
     aatcccaaca agatcctttt ttaggttcaa atcagcccta aaagttccgc ggcaaatcct      2880
     aacaattgaa ctcacaggaa ctgattatat aaaaattaga gcatcctttg caaaaaacag      2940
     ttactgcacg ttgataatcg atactggagc atccatatca ctttttaaaa attcaaaaat      3000
     taaccataac caaattataa acaacgataa caacctaacg ctacgaggaa tttcagacaa      3060
     attaatagac acactaggat acacaacctc atatttaaat tttggcaact cgaatgttaa      3120
     acataacttt tacctagtac cagacagttt tggcacttat gcagatggta ttttaggaag      3180
     agatttcttc aaacaacata gatgcaaagt agactacgag tttggattac ttcgatttaa      3240
     tgtcaacgga gaagaaatac agtacccatt agaagatgga gacgcgcaag gatttatcct      3300
     acccacacgc agtgaagtaa tcagaagagt ttatctacca aacatacaag cagattcagt      3360
     tatttttgct aaagagataa aatctggagt attttgtggt aatacagtaa ttaacaaaga      3420
     ttatcaaatg gtaaaattca taaatacgaa caattcaaat gtttatataa ccaaaggtga      3480
     atttcaacca aaagtagaac ctctttcaaa ttacaaaatt ggaaataatt actccgtttc      3540
     atctcaaatg aatacgaaca caaggataaa taaattatta gcgaaaattc atataaaaga      3600
     aacacctaag tcagaacagg aaaaacttaa aagggttata atgcagtata atgatatttt      3660
     ttgtgtcgat gaggatccca ttactacaaa taatttttat actcaagaaa taacactgaa      3720
     agacaatata ccaacataca taccaaatta taagcaaatc cattcccaaa cagaggaaat      3780
     tcagaaacaa gtagataaaa tgctcgaaaa taacataatt gaaaactcgg tatcttctta      3840
     taattctccg attctcttgg taccaaagaa atcgagtgaa ggagataaaa aatggagact      3900
     ggttgtagat tatagacaat taaacaagaa aatcttacca gataaattcc cactaccccg      3960
     gattgataca attttagacc agctaggaag agctaaatat tttagcacac ttgacttaat      4020
     gtcaggtttc caccaaattc cgttagaaaa gaattctaaa cgctttacag ccttttcaac      4080
     gcaagcaggt cactaccaat ttagacgaat gcccttcggc ctgaacatct gtccaaacag      4140
     ttttcagcga atgatggcaa tagctatggc tggattaacc ccagagctag catttgtata      4200
     tatagatgat ataatagtca ctggatgcag cacgcaacat catatcagta acatagttaa      4260
     agtttttgat agattaagga aatataatct taagcttaat ccagataaat gcagtttttt      4320
     caaaacagaa gtaacctatc taggacataa gataacggat aaaggaattt accccgatga      4380
     ttcgaagtat gaaataatta aaaatttccc tataccaact aacgcgaatg aatcccgtag      4440
     attcgtagct ttttgtaatt attaccgtaa attcataaaa gatttcgcta aaatagctaa      4500
     gccacttaat aatttaatta agaaagatgt taaatttaat tggaccaagg attgccagaa      4560
     tgcgtttgac acccttaagc aaaatttgct atcaccaaca attctcaaat ttccagattt      4620
     ctcaaaacag ttcataataa ccacagacgc atcagatgta gcttgtggcg cagttttatc      4680
     acaaatcaca gatggtaatg actatccagt agtatttgcc agcaaaagtt ttacaccagg      4740
     agagaaaaat aaaccaataa tagaaaagga acttacagca attcactggg caataaacca      4800
     ctttaagcaa tacatatatg gtcgtaaatt tatagtacga acagaccatc gaccacttgt      4860
     atatctattc ggaatgaaaa atccgacatc gaaacttaca agaatgagat tagatttaga      4920
     agaatttgat tttgatatag aatttctagc aggaaaagct aacgttgcag cagatgcact      4980
     atcaagaatt gtgttaaatt ctgaagattt aaaagcgtca atacctaaaa acaaagaaga      5040
     attgtcaact aagattatga tggttaatac aagagctatg acgagaaaaa tgaatattcc      5100
     tagactacaa aaaccaacta cacaaacagg gagtaattac cccgtagtat gggaaacaga      5160
     taggccgtct gagactagga aatttctgaa aatcaaatca agcattgtag ataataaaat      5220
     cgaactcgca atatacaata ataattacaa gaaagcgcta gggaaaacaa ttatacccat      5280
     tatacagaat gccaagaata accaaacact agagtttgcg ttgaatgaaa tttcaaagat      5340
     aacaaaacga tataaaagaa acaagctagc tatatcctca aatgataaaa tatttgaata      5400
     tttttccatg cagacaatca aagaagtagc caacagagca atttccgatg ttaatattgt      5460
     cattttcact ccaactagat ggattgattc acaggaagat aggctgagaa taatctctga      5520
     ttatcatatg acccctttgg gaggacatat aggccaatat aagttatgca agaaactaag      5580
     agagaaatat aaatggcata atatgaaagc agatatccgg aagttcgtta agaactgcaa      5640
     agcatgcatt actaataaga cacttagaca tacgaaagag gaaaccgttg tgacgacaac      5700
     accctcaaaa ccatttaatg taatctcaat agacacagtt ggtccattac caaaaactaa      5760
     caataacaac agatacgcag taacaataca agacgaacta acaaaatacg taacaataat      5820
     accaatccac aataaagaag ctaacacaat agcacgagca ttagtagaaa actttatatt      5880
     aacgtttgga acatttttgg agcttaaatc agatcaggga ctagaataca acaatgaagt      5940
     tttaacaaaa attgcagaaa tactcaaaat caaacaaact tttgctacag cataccatcc      6000
     acaaacgata ggatcattag aaagaaatca cagaagtcta aatgaatatc taagaagtta      6060
     taccaacgaa catcatgacg attgggatca atggactaaa ttttatgaat ttgtttacaa      6120
     tactaccatt cattcaacaa caaatttcac accatatgaa ttagtttttg gaagacaagc      6180
     aaacctacct caagacattt ataaaacgaa agtagatcca gtttacaaca tagaacaata      6240
     ttattacgaa atgagataca aaatgcaaaa atctaacgaa atagcaaggg aaaatcttat      6300
     tgcagccaag caaaaacaac agcaaaccct taatcgtaat acaaacgcta ttaaaataaa      6360
     aacaggagat caagtttatc taacgaatga aaatcgaagc aaattagatc cattttacat      6420
     aggacctttc actgttatag aaatacaaga agttaactgc aaaatcaaac ataatactac      6480
     gaacaaaata tcagtagtac acaaaaacag attaaaatta gcataggtga ataacgctat      6540
     cctttcgcaa catttcgctc aagtataaca ttattcaaca aaaggaggga gg              6592
//
ID   Gypsy-33_AnFu-LTR repbase;    DNA;    INV; 688 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-688
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2845-2845 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 688 BP; 251 A; 156 C; 118 G; 163 T; 0 other;
     tgtagcatgc taatgctaaa cagttatcat caatttgtca aatcagcaaa accaagacag        60
     tacacaggtc agtgtccatt acgcaacaac cagacacaaa taaaataatt aaagcatgaa       120
     tgttgaccaa tgaacgcaag taacccatca caaagccaag aacacaatat cagcagattc       180
     cgcagtttta atcgagcgcg cgacaacaga cgcgaacacc tttagcgcca acattaaaac       240
     atatcagcgc acgcttccag cgtatgatgc aatgcaatgc aatatgatac caataaaaaa       300
     catgtacaga caagctcatg cgaaagcgca agttcggaca ggtagcgcgg cagtgtaacc       360
     ggacacaatt gttttcgaca agaaccttta gttcttgtct tcatacagag aggttattat       420
     acgcaaattt gtcaattcaa catattcatc aacccaagaa aaaacttgta gacgacttga       480
     cccaaattgt aatagaacaa ataacataac aaaacccaaa taccaatgta ataaataaag       540
     gtgcctccgt tccgatgaga cagacagtca gttgatggtc tatgatggtc atcaatgaaa       600
     ctataacctg agttcgtttg tctttacgcc gcttcggcga ttcatatccc ttccgtatat       660
     tacatgacga ccgattacgt atattaca                                          688
//
ID   Gypsy-33_AnMe-I repbase;    DNA;    INV; 4600 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4600
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6845-6845 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..4586
FT                 /product="Gypsy-33_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNSQGDQEADEQRRQSQQWFQHALPPGPANPAPVPAM
FT                 PPFQMPTAENGVPPSQXAGTSGHQPTPGTSDVMQIVLQLQTQVNKLLLIHR
FT                 EGNVSQPPLVSSPAPNHEQILDSLSGHIKEFRFDEEERVTFVNWFSRYEDL
FT                 FAKDASKLDDAAKVRLLIRKLGSSEYNRYASFILPKHARDYTFDETVKKLT
FT                 ALFGSKESVLRRRYKCLNTTKAYSEDYLSFACRVNRACVDFEVGKISEEQL
FT                 KCLIFVCGLRNESDEEIRTRLLSLIENRPEVRLEDLTEECQRVLNLKMDSA
FT                 MIEKTPIEKVLAVAKSNDRQYGRRQNGYENIQHTQQPNYQYGRARSCWLCG
FT                 GDHHAIKCXLKNYKCSICNTMGHKEGYCSSAFRWNASRRKSAIRSVTIMEV
FT                 GSGRGRNIDVLINRTRVRMMVDTGADITIVSSRLWQQMGEPVLKPSTIMAR
FT                 TASGEQLNLLGEFTAEITLAQQREDCVIRVASENLSLFGRDAMDIFNLWNV
FT                 PLATVCNQLSSVSMGSNYFKDFEDLFLDEPGCCKKGRIQLVLKEGAIPVFR
FT                 PKRPVAYAMMAAVNGELDRLEREGIITPVDYSSWAAPIVVVRKANGSIRIC
FT                 GDYSTGLNDALQPHQYPIPRPEDIFTALGQSKIFSQIDLSDAFLQVEVEEN
FT                 CRELLTVNTHRGLYVYNRLPPGIKSAPGAFQQLMDTMLSGLNDVAAYLDDI
FT                 VVGGVDETTHRQNLRAVFTRLREHGFKIRREKCTFMKKEIKYLGHILDRNG
FT                 LRPDPTKVEAILKMPAPKQLSEVRSFLGAINFYGRFVPQMRNLRYPLDELL
FT                 KKEGAFQWTPECQNAFQMFKRILKSDLLLTHYDPSKEIIVAADASSVGVGA
FT                 TISHRMEDGTLKVVQHAARALTKAEMNYSQPDREGLAVIFAVTKFHRMIYG
FT                 RRFMLQTDHAPLLRIFGARTGIPIYTANRLQRWALTLLLYDFKIEYVPTDK
FT                 FGNADILSRLIEEHEHPEEDYVIASIELDNDMNAIIDNVTKAMPLTYSDVR
FT                 EATKRDPTLTKVSKYIQEGWPQRKSNDIMLRSFQARSEALSTLRECILFGE
FT                 RLVVPEALRRKCLRQLHLGHPGIQRMKSLARSYVYWPGLDSEIAELVKSCP
FT                 QCAAAAKSPPHSTPIAWPTTSAPWQRVHVDYAGPIDGFYYLLAIDSFSKWP
FT                 EIVQTTKITTQATIRILRGLFARLGMPNVLVSDNGTQFSSAEFGEFCTTNG
FT                 IEHIRTAPYHPQSNGQAERFVDSLKRGLKKISEGGASAQESLDIFLLMYRS
FT                 SPNRQLENGKSPAELMLGRRMRTCMELLRIPPESEPESPVPQXRVRCFKRG
FT                 DLVYAKVYAQNKWKWKKGVIEDRMGKVMYQVVDEEGKIFRSHINQLNPRYT
FT                 NSYTLANSSSTYTPFKRALDMSILMDGNVAITRPDPAPNVCAQPSDSTLAS
FT                 AAATCSPTPQVPCSPPSREIAIRSETFPEDMHSEPAMPVQPLRRSSRTRRS
FT                 PRWMAMYKPY"
XX
SQ   Sequence 4600 BP; 1379 A; 977 C; 1132 G; 1107 T; 5 other;
     actggcgacg agttttaaag tgatcgtgtt gttttgtgtc cgtcaaaagc aacatttgga        60
     acccgaagtt acgtagtgcg cgtcgtattt atttatttat tcgtgtacgt gcgttcgcgt       120
     taagtgtttt taaaatacca ccaagacgaa aaagggctag aatgaacagc caaggcgacc       180
     aggaggcgga tgagcagcgt aggcaatcgc agcaatggtt tcaacacgct ttgcctccag       240
     gaccggcaaa tcctgctcca gtaccagcga tgccgccatt tcagatgcca acagccgaga       300
     atggtgtacc gccatcgcaa mtcgcaggaa cgtcgggtca tcaacctacg ccgggaacgt       360
     cggacgtaat gcaaatcgtg ctgcaactcc aaacgcaagt gaacaaatta cttttaattc       420
     atcgtgaagg taatgtttca caaccaccgc ttgtatcatc gccagcccca aaccacgagc       480
     aaattctaga ttcgcttagt ggtcatataa aagagtttcg cttcgacgaa gaggaaaggg       540
     ttaccttcgt gaattggttt tctcgatacg aagatttatt cgctaaggac gcttcgaagc       600
     tcgatgatgc agcaaaagtg cggctattaa ttcggaagtt gggcagtagc gaatacaaca       660
     gatacgccag ttttattttg ccaaaacatg ctcgcgatta cacgttcgac gaaaccgtaa       720
     agaaactcac agctcttttt ggcagcaaag agtccgtttt gagaagacgt tataagtgtt       780
     tgaataccac taaagcatat agtgaggatt atctgtcctt tgcttgccgg gtgaacagag       840
     cgtgtgtgga ctttgaggta ggcaaaataa gcgaagaaca actgaagtgt ctcatcttcg       900
     tgtgcgggtt acggaacgaa agcgacgaag agattcgtac tcgacttctt tcactaatag       960
     aaaaccggcc ggaggtacgc cttgaagatt taacggaaga gtgccaacgc gtactaaatt      1020
     tgaaaatgga tagcgcaatg atagaaaaaa cacccataga aaaagtgtta gcagtagcaa      1080
     agagcaatga tcgacaatat ggtagaagac aaaatggtta cgagaatatt caacacacac      1140
     aacagccaaa ctatcagtat ggccgcgcta gaagctgctg gctgtgtgga ggcgaccatc      1200
     atgcaataaa gtgcamtctt aaaaattata aatgctccat ttgcaacact atgggacaca      1260
     aagaaggcta ctgtagctcg gcatttcgtt ggaacgcgag cagaagaaaa agtgcgatca      1320
     gaagcgttac gattatggaa gttggaagcg ggcgaggaag aaacatcgat gtgctgataa      1380
     atcgaactag ggtgagaatg atggtggata ccggcgcaga cataaccatc gtttcatcga      1440
     gattgtggca acagatgggg gaaccagtgt tgaaaccatc aacgataatg gcaagaacgg      1500
     catcggggga gcagctgaat ctacttgggg agtttactgc tgaaattaca ctagcccaac      1560
     aacgcgaaga ttgtgtgata cgagtggcct cggagaacct ctcacttttt ggaagagatg      1620
     cgatggacat tttcaacctc tggaacgtac cgctggcaac tgtttgcaac caactgtctt      1680
     cggtgagcat gggttctaac tattttaaag attttgaaga tctattttta gatgaaccag      1740
     gatgctgcaa gaaaggaaga atccagttgg tcctaaaaga aggcgcgatt ccagtttttc      1800
     gtcctaagag accggtggcg tacgctatga tggcagctgt taatggagaa ctggatcggc      1860
     tggagcgaga gggaattatc acccccgtag attattcgtc atgggccgcg cctattgtgg      1920
     tagtgcgcaa ggccaacgga tcaatacgca tctgtggaga ctattctacg gggctgaacg      1980
     atgcgttgca accccatcag tatccgattc cgcgccctga agacattttt accgcattag      2040
     gacagtcgaa aatttttagt cagatagacc tatcagacgc ttttctccaa gtagaggtag      2100
     aggaaaattg ccgcgagctc cttaccgtga atacccatag gggtttatat gtatacaatc      2160
     gccttccacc cggtataaaa tctgcgccag gggccttcca gcaactcatg gacactatgt      2220
     tgtcgggatt gaatgatgtg gccgcatacc tggatgatat cgtagtaggt ggagttgatg      2280
     aaaccacaca cagacaaaat ctgcgagcag tgtttaccag actgcgtgag catgggttta      2340
     agattagacg agagaaatgt acgtttatga aaaaggagat aaagtattta ggacatattt      2400
     tggatcgtaa cggkttgcga ccagacccta ctaaggttga ggctatactc aagatgccgg      2460
     ctccaaagca gctatctgag gtgcgatcct tcttaggtgc aatcaatttt tacggtcgat      2520
     ttgtaccaca aatgcgcaat ctgcggtacc ccttggatga gttgttgaaa aaggaagggg      2580
     catttcagtg gactcctgag tgtcaaaatg cttttcaaat gttcaaacga attttaaaat      2640
     cggatctact tttgacacat tacgacccaa gtaaagaaat tatagtagct gctgatgctt      2700
     cttctgtagg cgtcggagcg acgattagcc atcgcatgga ggatggaacc ttgaaagtag      2760
     tacagcacgc agcaagagca ttgacaaaag cagaaatgaa ctacagtcag ccagatcgcg      2820
     agggtttagc cgtgatattt gctgttacaa agttccaccg catgatttat gggcgtagat      2880
     tcatgttaca aacggatcat gctccgctgt taagaatttt cggtgcacgc acaggtatac      2940
     caatttacac agcaaatagg ctccagcgtt gggctttaac gttgctgcta tatgatttta      3000
     aaattgagta cgtgccaaca gacaaatttg gtaacgctga tatattgtcc cgactgatag      3060
     aagaacacga gcacccagaa gaagattatg ttatagcgag catcgaatta gacaatgaca      3120
     tgaatgctat tatagataac gtaactaaag caatgccgct aacatatagc gatgttaggg      3180
     aagcaactaa aagagatcct acgttgacaa aagtatcaaa gtacattcag gaaggttggc      3240
     ctcagagaaa atcaaacgac ataatgttga gaagcttcca ggcacgaagc gaagcattaa      3300
     gcacacttag agaatgcatc ttatttggag agcgattggt cgttccagaa gcattgcgta      3360
     ggaaatgttt gagacaacta caccttggac accccggaat acagcgtatg aagtcactgg      3420
     cgcgaagcta tgtttactgg cctggtttag actcggaaat agctgagtta gtgaagtcgt      3480
     gtccacagtg cgcagcagca gcaaaatctc ctccacatag tacgccaata gcctggccca      3540
     ctacgtctgc tccgtggcaa agagtgcatg tggattatgc gggaccaatc gatggatttt      3600
     attatctcct tgcaatcgat tctttctcaa agtggccaga gatagtgcaa acgaccaaaa      3660
     tcacgactca agcaacgatt cgtattttac gtggattatt cgcaaggctg ggtatgccga      3720
     atgtactagt tagtgacaat ggcactcagt tctcaagtgc ggaatttggg gaattctgta      3780
     ccaccaacgg gatagaacat attagaaccg ctccttacca cccccagtcg aatggacagg      3840
     cggagcgatt cgtagactct cttaagcgag ggctaaaaaa aatcagcgag ggaggagcat      3900
     cggctcaaga gtcactggac atctttttat tgatgtatag aagctcwccc aataggcagt      3960
     tagaaaacgg caaatcacca gcggaactga tgcttgggag aagaatgcgt acctgcatgg      4020
     aattgcttcg tatacctccc gagtctgaac cagaatctcc cgtgcctcaa cawcgcgttc      4080
     gctgtttcaa acgaggcgat ttggtatacg cgaaggtcta tgcacaaaac aaatggaaat      4140
     ggaaaaaagg tgttatagaa gacaggatgg ggaaggtcat gtaccaagta gtcgatgaag      4200
     aaggaaaaat atttcggtca catattaatc agttaaatcc tcgttacact aattcttata      4260
     cccttgcaaa ttcttccagc acatacacac cgtttaaacg tgccttggat atgagtatct      4320
     tgatggatgg taacgtggct ataaccagac cagacccggc tccaaatgtc tgcgcgcaac      4380
     cgtccgattc gacactagca agcgcagcag ctacgtgctc gccaacaccg caggttcctt      4440
     gttcaccacc atcaagagag attgccatac gttcggaaac attcccggaa gacatgcata      4500
     gtgagcctgc gatgccagtg cagcctctac gccgttcttc ccgaacacga agatcgccgc      4560
     gttggatggc tatgtacaaa ccgtattaaa gcagggggga                            4600
//
ID   Gypsy-33_AnMe-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-267
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6870-6870 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 267 BP; 71 A; 54 C; 73 G; 69 T; 0 other;
     tgttggggag tgccctcgtg tagacggcct tacagatgca gatgctgcat gggcctcctt        60
     ctctcaggtg acagggactg tcacctggag acgaagcaag cacgaagagg acactccccc       120
     acgagccgag ccgagagata gacgtgagcg ggtctccgtc taaggatttg ttgattataa       180
     gtttcattgt aatagatata agttttataa tcggagactg ttatgttttg tttaccgtca       240
     agtaaagttg agaacgtaga cataaca                                           267
//
ID   Gypsy-33_CQ-I repbase;    DNA;    INV; 4876 BP.
XX
AC   AAWU01012402;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_CQ_;
KW   Gypsy-33_CQ-LTR; Gypsy-33_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4876
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 445-445 (2011).
XX
DR   GenBank; AAWU01012402; Positions     333    5208.
XX
CC   Positions [3850-4275] - Integrase core
CC   'ATAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2365..4275
FT                 /product="Gypsy-33_CQ-I_1p"
FT                 /translation="MEQMISRLKGSKFFTRFDIKQAFHQLVLKEDCRYITT
FT                 FISPLGLMRYKRLVFGLSAAPELFQKAMENILCDFAWVIVFIDDILIHAPD
FT                 KLTLERRTKIVMERLKDRNISLNEAKTLKCVTELEFLGYQLSGNGVTISNS
FT                 KLDTITKFRIPKTAEEVRSFLGLITFVNRYIPHLSSIAKPLNNLIKKGIPF
FT                 NWTSDHQEAFDKIKLILAKKETLAIYDTNLETFVMADASPVGLGAVLFQKN
FT                 QNGTYQIIGYVSKTLSEVERRYAQIEREALALVWSVEKFYYYLYGKFFWLI
FT                 TDHKPLVTIFGERAKPSARIERWILRLMSFKYQVIYQPGKSNIADPFSRLC
FT                 QDAEICDESFDEEAERIIRMVSHDICPASLSHEEISDATCKDIELSDLIKW
FT                 LPYPVKRWPKTLIKYKSFAKDLSTDGCIVLKNKKIIIPKILQNRVLQLAHE
FT                 PHLGIIAMKKRLREKVWWVRIDKMIVNFVKACEGCLLVSKCSTTPMTRTPL
FT                 PTGPWKKIAIDFTEIMNNTHLLVVVDYFSRYPEVEIMPSMTASATIYKLKI
FT                 IFARFGYPEEIVCDNGPPFHSEEFIVFSKTCGIKINYSVPYSPFQNGMVER
FT                 FNKSFLKTVKISATMGRDWKTDLQNFLLGEIQYTMNRDR"
XX
SQ   Sequence 4876 BP; 1765 A; 715 C; 928 G; 1468 T; 0 other;
     ttggcgacga gcgggagtct tggaaacgaa gaagttgaag ttgtttactg aaaaatctaa        60
     tttggaactg aagatcaatt tatttcaaaa ttcaaattgg aacttttaga atcaaattta       120
     tcgaacattc aagtataaat ggcgagagta agtctgaatg tattaagaaa aatatattta       180
     aaaaaatcaa aataataatt tcaaattatt agaaattttt gccaatttat ttttgtttga       240
     aacggttaga ttacgctcta ccgggattgg aacaaatgaa ttgttcaatc tgatttttgt       300
     cgagactccg gtctggcaag agaaacggca gtactccggt ctgccgggat cgaaacgaat       360
     ccgtttgttt gattcatttt tgtcgaggct ccggcctgac aaaggaatcg acagtactca       420
     ggtctgtcgg gatcggaaca aatccgtttg ttcgatctat tttgtcgagg ctacggcctg       480
     acaaagaacc ggtttgactc aggttaaccg ggatcggaac gaatacgttc gttcgatcta       540
     atttgttgag gttccggcct aacaaagata tcggtttgac tccggtcaac cgggattgga       600
     atgatctatt cattcaatct gtgttgttca gattccggtc tgacaagtac aaataaaata       660
     aattggcaaa cagaaaatct gaacaaattg agatatattt ttcactgaag tctagaaact       720
     taatttattt caatatgata ctaatttaaa atatatttta gttggagtgt aacattttac       780
     cgtttattga aaatgaagac gaaacaacca acgttcgatg ggaagcatgg aaagatcaat       840
     ttttggctta tatggcattg aaaagaatta atgctcacga tgaaatgttt aatgctctac       900
     aatgttttgg cggacctgat gttagaaaag ttattaagac atgtggagaa aatgctgttg       960
     aaaatttatt tgaagctgct atggaagttt tggacaacta ttttgcaccc aaaatgtcat      1020
     tacgatatga aagacatcgt tttcggcaaa tgttgttcaa tcctaaagaa aagttggatc      1080
     attttgttat tcgtttacgt tctcaagcaa cactatgtgg ttttgatgat caacttgaag      1140
     agagaacatt agatgaaatg ctgaaagtgc gccgtactca tgagtcagtc agagttcagg      1200
     tacattttat ttattttgca gagaaattat ttataattca aataaaacta atcaattact      1260
     ataggtacac gagttgcgta acaaaccagt gcatgattcc agagaaattt gcgaaattaa      1320
     caggaaagat ataaaatgca gtcgatgtaa tggaaatcat ttagctaata atcctcgttg      1380
     tccggctcgt gatatttctt gtcattactg taacatgacg ggccattttg cgagatgttg      1440
     tatgtccaga agatctggtt ttcaaaagat gcataaaaag gatgattatg gtaacacgaa      1500
     caaaaattat caacaaaatc aaaagcatca gatgaagaca caacaaaagt ttgttcggga      1560
     agtggatgat gttacagaaa aagttgaaat ccgtgaatta ttccatttgg acgggaaacg      1620
     atctgttgcg ctggatgtag gaggagtcga agtaaatttc attatcgaca ctggagcaga      1680
     tgaagatgta ctaagcattg atgattggaa aaaactgaaa caaactggat ttaaaatgtt      1740
     tgatgtgagg aaaggcagtg acaaaatttt tcgtgcttac ggtagctaca aaccattgac      1800
     tgtacttgga gaagttgatg ttgaagtgag gcataaaaac caatgccatc gaaccacatt      1860
     atttgttatt caagacggaa aatgttcatt attatctgga aaatcagcag aagttcttgg      1920
     aattgttaaa tttttacatg ctattacaca gactccattt ccggcaataa gaggtaatga      1980
     aatataatgt acataaagca gaagatataa taaaatgtaa tgattaaaat tattagatat      2040
     gtttgcttca ataaaaatcg ataaaactgt tccaccagtt agacaatgtt tacgtcgtat      2100
     tccaattcca ctagaggaac tcacattact taaattaaag gaattagaaa atcatgatat      2160
     aatagaaaga gtcaatgaag cttcagaatg ggtctctcct atggtagtta agaggaaaag      2220
     tgccaatgag gttaattttt attttaataa caaaatatta tttataagca ttatattatt      2280
     taatgtaaat taaaggtgag aataataatt gatttacgag aagctaataa agcagtaatc      2340
     cgagaagtac atcctttacc aacaatggaa caaatgattt ctcgattgaa aggcagcaaa      2400
     tttttcacaa ggttcgacat taaacaagct tttcaccaac ttgtgctcaa agaagattgc      2460
     cgatatatta caacttttat ttcacctctt ggtttaatga gatacaaacg attagttttt      2520
     ggtttgtcag cagcccctga attattccag aaagcaatgg agaatatttt atgtgatttt      2580
     gcgtgggtaa ttgtatttat agacgacata ttaattcacg ctcctgacaa actaacactg      2640
     gaaagaagaa caaaaattgt gatggaacga ttaaaagatc gaaacatatc tttgaatgaa      2700
     gctaaaacat taaaatgtgt aacagaatta gaatttcttg gatatcaact gtctggaaat      2760
     ggtgttacaa tctcaaattc aaaattggat acaataacta aatttcgaat tccaaaaact      2820
     gctgaagaag tacgaagttt tttaggattg attacatttg tcaatcgcta tattcctcac      2880
     ctatcttcaa ttgccaaacc attaaacaat ttgatcaaga aaggcattcc ttttaattgg      2940
     acatcggatc atcaagaagc atttgataaa ataaaattaa tattagctaa gaaggagacc      3000
     ttagcaattt acgacacaaa cttagaaacg tttgtaatgg ctgatgcgag tccagttgga      3060
     ttgggagcag tattatttca gaaaaatcag aacggaacat atcaaattat tggttacgtg      3120
     tccaaaacat tatcagaagt tgaaagaaga tatgctcaaa ttgaacgtga agcgctagct      3180
     ttagtgtggt ctgttgaaaa gttctattat tatctttatg gaaaattctt ttggttgata      3240
     acggatcaca aacctttggt cactattttt ggagaacgag caaaaccgag tgcaagaatt      3300
     gaaagatgga ttttaagatt gatgtcattt aaatatcaag tgatctatca acctggaaag      3360
     tctaacattg ccgatccatt ttcgagacta tgtcaagatg cagaaatttg tgacgaaagt      3420
     tttgatgaag aagcggagag aattattcga atggtttcac atgatatttg tccagcatca      3480
     ttatcacatg aagaaataag tgacgccaca tgtaaagata ttgaactttc tgatcttatc      3540
     aaatggttgc cgtatccagt taaaagatgg cctaaaacct taattaaata taaatctttc      3600
     gctaaagatt tatcaaccga tggctgcatt gtactaaaaa acaagaagat tatcatacca      3660
     aaaattttac aaaatcgtgt tctacagttg gctcatgagc cccatttagg aattattgca      3720
     atgaaaaaac gattacgtga aaaagtatgg tgggttcgaa tcgataaaat gattgtaaat      3780
     tttgtgaaag cttgtgaagg atgtttatta gtttctaaat gctcgaccac accaatgaca      3840
     agaacaccac taccaactgg tccctggaag aaaattgcta ttgattttac ggaaattatg      3900
     aataacactc acttattagt agttgttgac tatttttcac gatatcctga agttgaaata      3960
     atgccatcaa tgactgcttc tgcaacaatt tataaactta agataatttt tgcaagattt      4020
     ggatatccgg aagaaattgt gtgcgataat ggaccaccat ttcactcaga agagttcatt      4080
     gtttttagta agacttgtgg catcaaaatt aattattctg ttccatattc accatttcaa      4140
     aatggaatgg ttgaaagatt taataaatca tttttgaaaa cagtgaaaat tagtgcgact      4200
     atgggcagag attggaaaac agatttacaa aattttcttt taggtgaaat tcagtataca      4260
     atgaacagag ataggtaaag acttaaatcc tttattttag cttatcggtc tacaccacat      4320
     tccgtaacag atgtggaacc agcaaaatta atgtttggaa gaaatattcg agataaatta      4380
     ccgacaatag attctaccaa agcatcacca gattacgatg caattaaaga caaagaccga      4440
     gaaaataaag aaaaaggaaa actaattgga gatagaaaga ggaaagcaaa agattcttcg      4500
     attgatgtcg gcgatgaagt cattgttaaa aattttataa agaagaacaa aatgactacc      4560
     aatttcaatc cacagcctca tattgtagtt aaaaggactg gaacgagatt aactgtcaag      4620
     aataagcgaa ccggagttga attggataga catgttaatc atgcaaagaa actactttca      4680
     gcaagtccat ttgaaaagga aataaatgat agagatgtca atccaactga ggaaaacggc      4740
     agtacaacga ttggagaaga tgtcagcacg cgtacttcga gaaggatttc caagaaaccg      4800
     aactacttac atgattattc attatatcag tttgatgaaa atctaaatta aagttcatgt      4860
     taaaacaagg aagaga                                                      4876
//
ID   Gypsy-33_CQ-LTR repbase;    DNA;    INV; 140 BP.
XX
AC   AAWU01012402;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_CQ_;
KW   Gypsy-33_CQ-I; Gypsy-33_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-140
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 446-446 (2011).
XX
DR   GenBank; AAWU01012402; Positions     193     332.
XX
SQ   Sequence 140 BP; 42 A; 24 C; 23 G; 51 T; 0 other;
     tgtgatatat tgtaatatta tagtagtcta tgatttagta gatcatagta gtcaatgata        60
     tgtaggtcaa taaagattca ttaccaccct tgtcattcta ctgaacggac ctgtttggac       120
     gtctctctct caacattaca                                                   140
//
ID   Gypsy-33_DAn-I repbase;    DNA;    INV; 6095 BP.
XX
AC   AAPP01015632;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_DAn_;
KW   Gypsy-33_DAn-LTR; Gypsy-33_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6095
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015632; Positions  247479  253573.
XX
CC   'GTGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1418..2755
FT                 /product="Gypsy-33_DAn-I_2p"
FT                 /translation="MDSSILEAEGPNSSKCVLCDRTLSSAPLAKASCGHEF
FT                 HKTCLQAHAKSKGSCPKCKTAKVPMSSQPQATQPIAPEPAVNMAQTIEAVV
FT                 SQQLRGLQNELLTQLADQMRQLIEVNVAAHLQPNRNSEFAQNPDPRSVSFR
FT                 QPDEGPSMSRPMSAFSNSDLANRPDKVGHIITSWKLRFNGCPEGLSIDNFL
FT                 YRVEALTHQTLEGNFSVLCSNASLLFDGKAREFYWRFHRTADHLRWDELTK
FT                 ALRKQFRDTRTDVDLREAIRGRKQKERENFDSFYDGVVQLTDCLETPMTEK
FT                 ELIEILRRNLRPEIRHELLNLSIDSVQRLRDVCRRRESFLEDVKRSYGYQR
FT                 PAPFRKQVAELVEDMEPDDATEFSAAEIIDEIDALALVCWNCRKEGHRYHD
FT                 CEAKRKIFCYGCGTPNTYKPSCSKCQKNGKVNTRPNQQSCVPRRNFENQEK
FT                 H"
FT   CDS           2671..6018
FT                 /product="Gypsy-33_DAn-I_1p"
FT                 /translation="MSKKREGEHTTKPAVVCSTSKFRKSGEALNCLANLSE
FT                 SVMSPMAKLAQSDASIVSDPVESNSQSTIFWPQRVRNNTLPEISPPRVVKK
FT                 TPSRSAKRLKDFWKTVKTINAIRHKCSDRRPYAEVRVLDQTVLGLLDTGAS
FT                 VSVLGGKLAEHVIRKRIPFKRSFGPITTADGHKQDVIGRLRSPVMYENKTK
FT                 ELEFFIIPALSQDLYLGIDFWSAFDLLPPSMEIAELESDSHILDETQKLAL
FT                 GKVVREFPSFAISGLGKTSLIAHSIDVGDAKPIKQRHFPVSPAVEKLLYAE
FT                 VERMLKLGVIEESDSAWSSPVVLVQKPGKVRLCLDSRKVNEVTKNDAYPLP
FT                 QIDGILSRLPKANFITSLDLKDAYWQIPLDPASRDKTAFTIPGKPLYQYKV
FT                 MPFGLSNAPQTMTRLMDKVVPPELRNEVFVYLDDLLIVSGSFDSHLKVLSA
FT                 IAGRMKMAGLTLNVEKSRFCMRSVKYLGHIIGEGVVRTDPEKVSAMVDFPL
FT                 PKTLKALRRFLGMANWYRKFISNFASVAAPLTDLLKPKQRFAMTPDGQLAF
FT                 EKLKKLLSSAPVLCSPDFSKAFSIHCDASSTGVGGVLVQKSDEGDECPIAF
FT                 VSKKLNKAQRNYTVTEQECLAAIICINRFRPYIEGHQFQVITDHASLKWLM
FT                 GQKDLHSRLGRWAISLQRFKFHFDHRKGNLNVVPDALSRVHEEEVAALDAK
FT                 QGLLIDVESPHFRDPEYLKLMEGIAANAENLPDLKISDGLLFKRTEHITGE
FT                 PIHDSFCWKLWVPSQLVPEILKKAHDDPLASHGGIHKTLERVRRYYFWPGL
FT                 VKDIKEYVQACELCKTTKAPNHTLRPPMGVAPESQRAFQKLYMDFLGPYPR
FT                 SRSGNVGIFIVLDHYSKFVFLKAVKKLTADTVVKYLQQELFHTFGVPENVI
FT                 SDNGSQFRAELFQKLLRDNKISHTLTAVHSPQANASERVNRSVIAAIRSYI
FT                 REDQKDWDEHLSSICCALRSAVHSSLGTTPYYMVFGQHFMTSGATYKLLRA
FT                 LSLLDDKSISFSRQDSLEIVRQQALKVMRRQQEKNERNYNLRSRSVAYSEG
FT                 QEVFRRNFKQSNFQTGYNAKLGPAFVKARVRRKIGNAYYELEDLQGRLIGK
FT                 YHAKDIRQ"
XX
SQ   Sequence 6095 BP; 1785 A; 1221 C; 1449 G; 1640 T; 0 other;
     attataatca tttatagtta ttaggaatca taatttttgg cgcccaactt taaggccaca        60
     tttttggtgt gacccaagct cccgaaatcc tcaaacaata gtaaggatca ggaaccaggt       120
     ggtgggctat acaaccaaac atagccacgg ttgccaccgg ttgctatcaa acatgagtat       180
     cttgcctaca gtaatggtaa aacgcatagg aacacagagc atggaaatat tctgttctct       240
     gtccacgtta gaccttacta aaggcagaga aaataatctt aatcctaatt taaaaaaatt       300
     ccatataaat atccgcacct gcttaatcaa acgcttagga aatgcaagcg tattttgtcc       360
     ttggacgaaa cgcttgacca cgggtgatta ggtcagatgt gggtattttt gtcatcaaaa       420
     gaaaaaatat atataaatga aatatattta aaagcaggtt cgcgacattc gaagggtatg       480
     cagcgtcggt catctttttt ataaagattg ctgcagacca cgatggtcat catagcgaac       540
     atgcttagct gcaaacgtag agaggtgtta aacgcaggaa tacaggaaga gggggattat       600
     gctaatgagg caattagtgc aattccctta cttcgtctgt ccgcggtttg cactaactgt       660
     cttatggtcg cagacttgcg ataagcagcc ttgcacaaaa ttttttttcg tttttttcat       720
     attccctatt cctcaagcct aatcgcgcaa atttgggttc ttattgctat aatcgagcta       780
     tgcttgctgg cattattttt atgatattgt gaaattttat atcggtaaat tttatttgtt       840
     tgtttttttt tgctttttaa tgaatgtttg atgttatcta aaattatata aattttgttt       900
     tacattttgt atgagactta taatctgcat ttatttaata cttttacttt aattatattt       960
     taatatttta attatttaaa atctgctatt cattgctctg tacaagtaaa agagttgtag      1020
     ccagacaagg ggagcgcaac agcaagtgca gggtaggaga gaaagggttc attgacccca      1080
     aatagataag aattgcaggc aaggtacaat tctaggtgtg aaagagagaa acaagaatta      1140
     cataatttgg aggtcgttga cttctgggat gtgataatca ttcacagctg ttttatttac      1200
     tgagccaatt cattttaata tttatattta ttagtttagg aacttaatta ttattattta      1260
     tttatttatt tatatattta tttatttatt tgattgttta tttgtcgatt catctaattt      1320
     ggtttattga gtggttagaa ttatatggtg gttcgtttaa ttaggttttt ttggtgaaag      1380
     tagtcagaaa ttaaattcaa caagttagtg ggttaacatg gactcgtcaa ttttggaagc      1440
     cgaggggcct aattcctcca aatgtgtgct atgtgacagg acattgtcaa gcgcgccgtt      1500
     agccaaggct agttgtggac atgagtttca taagacttgt ctccaggctc atgctaaatc      1560
     caagggttcg tgtccaaagt gcaagaccgc caaagttcct atgtcatcgc aaccccaagc      1620
     cacccaaccg atagctcctg agcctgcagt taatatggct caaaccatag aggcggttgt      1680
     ctcccagcag ttgcgagggt tgcaaaatga gttgctaaca cagttagccg accaaatgcg      1740
     gcaactgatt gaggtcaatg tagcagcgca ccttcagcca aaccgaaaca gcgagtttgc      1800
     ccaaaaccca gacccccgat ccgtgtcctt ccgccaacca gatgaagggc catcaatgtc      1860
     gcgaccaatg tcagcgttct cgaactcaga tctagcgaac cgtccggata aggtgggaca      1920
     tattataacc agttggaagc tgcgattcaa tggatgccca gaagggttat ctattgataa      1980
     ctttctatat cgcgtagaag ccttaaccca ccaaactttg gagggaaatt tttcggtgct      2040
     ctgcagcaac gcgagcttat tgttcgatgg gaaagctcga gagttctact ggaggttcca      2100
     cagaacggca gaccatctga gatgggatga actgacaaaa gctctacgaa aacaatttcg      2160
     agatacccgg acagatgtag atctgcgaga agcaatccgg ggtcgaaaac aaaaggaaag      2220
     ggagaatttt gattccttct acgacggggt agtccagctg acggattgtt tagagacccc      2280
     tatgactgaa aaggagctca tagaaatcct cagaaggaat ttgcgtcccg aaataagaca      2340
     cgaacttctc aatttaagca tcgactccgt acagcgtctt agggatgtgt gtaggcgcag      2400
     ggaaagcttc ttagaagacg ttaagcggag ttatggatac cagagaccag ctccgtttcg      2460
     caagcaagta gcagaattag tcgaggatat ggaacccgat gatgctactg agttttcggc      2520
     tgcagaaata attgatgaga tagatgcact agcattagtt tgttggaact gcaggaagga      2580
     agggcaccgc taccatgact gcgaggcaaa gagaaagatt ttctgctatg ggtgtggcac      2640
     cccaaataca tataaaccat catgcagtaa atgtcaaaaa aacgggaagg tgaacacacg      2700
     accaaaccag cagtcgtgtg ttccacgtcg aaatttcgaa aatcaggaga agcattaaat      2760
     tgtttggcca atttgtccga gtccgtgatg tcaccaatgg ccaaactggc ccagtccgat      2820
     gcctccattg tgtccgatcc ggtcgaatca aattcccaaa gtactatttt ctggccgcag      2880
     cgggtcagga ataataccct tccggaaatt tcacccccta gagtggttaa aaagacccca      2940
     tcccgaagtg ccaagcgttt aaaagatttc tggaagacag tcaaaaccat aaatgccatt      3000
     aggcacaaat gttcggatag acggccgtat gcagaggttc gcgtgttaga ccaaacggtt      3060
     ttaggactac tggacacagg agcgtcagtc agtgtcttag gtgggaagtt ggctgagcac      3120
     gttataagaa aacgtatacc ctttaagcgt agtttcgggc cgatcactac agcagatggt      3180
     cacaagcagg atgttatagg gcggctacgc agtccagtaa tgtacgaaaa caaaacaaaa      3240
     gaattagagt tctttataat tcctgcgctt agccaagacc tgtacctggg catagatttc      3300
     tggtccgcat ttgaccttct gccaccaagt atggaaatag cagaattaga atcagattcg      3360
     catatcctag acgagactca gaagttggcc ctaggaaaag tagtaagaga atttccctcg      3420
     tttgccattt ctggattggg gaagacgagc ctaatagcgc atagtatcga cgtaggagac      3480
     gcaaaaccaa taaagcagag gcatttccca gtctctccag ctgtggaaaa gcttttgtat      3540
     gcagaggtcg agcgtatgct caaactagga gtaatagagg agtcagacag tgcttggtca      3600
     tctccagtgg tcttagtgca aaaacccggc aaggttaggt tgtgcctaga cagtagaaaa      3660
     gtcaacgaag taacgaaaaa tgatgcttat ccattgccgc aaattgacgg tatcttaagc      3720
     agacttccga aggcgaattt tataaccagc ttagacctaa aagatgccta ttggcaaata      3780
     cccctagatc cagcatcgcg ggataaaacc gcatttacta tccctggcaa gccactttac      3840
     cagtataaag tgatgccatt tggactgtca aatgcaccgc aaaccatgac caggctcatg      3900
     gacaaagtag tgcctccaga actaaggaac gaggtgttcg tctatctgga tgatttactg      3960
     attgtctccg gctcttttga tagtcatttg aaggtcctga gtgcgatagc aggtcggatg      4020
     aaaatggcgg gattaactct aaacgtggag aaaagtaggt tttgcatgcg cagtgtgaag      4080
     tatttggggc acattatagg tgaaggggtg gtgcgaaccg atccggaaaa ggtgtcggca      4140
     atggtggatt ttcccttgcc gaagacgtta aaggctttac gacggttctt agggatggct      4200
     aattggtatc ggaaatttat tagtaatttc gcttcagtag ccgcgccctt gacagatctg      4260
     ttaaaaccaa agcaaaggtt cgcgatgacc ccagacggac agctagcgtt tgagaaacta      4320
     aaaaaattgt taagctcggc tccggttttg tgtagccccg atttcagcaa ggctttctca      4380
     atccactgcg atgccagtag tactggcgtg ggaggagttt tagttcagaa gtcggatgaa      4440
     ggggatgaat gtccgatagc cttcgtttcg aagaaactta acaaagcgca gagaaattat      4500
     acggtaactg agcaggagtg tttggcggct attatttgta taaaccgatt ccgcccgtat      4560
     attgaaggtc atcaattcca ggtgatcacc gatcatgcct cgctgaaatg gctaatgggt      4620
     caaaaggatt tacactcccg attaggacga tgggccattt cgctgcagcg ttttaaattt      4680
     catttcgacc accgtaaggg caaccttaat gtcgttccgg atgcgttgtc acgagtgcat      4740
     gaagaagaag ttgctgcttt agatgcaaag cagggtcttc tgatagatgt agagtcaccg      4800
     cattttcgag atcctgagta tttaaaattg atggagggca tcgcagctaa tgcagagaat      4860
     ttgccagacc taaaaatttc ggatgggttg ctctttaaaa gaaccgagca tataacaggc      4920
     gagccaattc atgacagttt ctgttggaag ctttgggtgc cttcacaact tgtaccggag      4980
     attttgaaaa aggcccatga tgacccgttg gcgtcgcatg gaggtatcca taaaactctg      5040
     gagcgggttc ggcgctatta cttttggccg gggctggtaa aagatatcaa ggaatacgtg      5100
     caggcctgtg agctgtgcaa aacgaccaaa gcaccaaacc ataccttgcg acccccaatg      5160
     ggagttgcgc ccgaatcaca acgagcattc caaaagcttt atatggactt cttagggccc      5220
     tatcctcgat cccgaagcgg taacgtaggg atcttcattg ttctcgacca ttatagcaag      5280
     ttcgtctttc taaaagcggt aaagaagcta acggctgaca ccgtcgttaa gtacctacag      5340
     caggaattat tccatacctt tggagttcct gaaaatgtaa tatcggataa cggttcacaa      5400
     tttcgagcag agctgttcca gaaattgttg cgtgataaca aaatttcgca caccctcaca      5460
     gccgtgcact cccctcaagc gaacgcttca gaacgagtca accgctcagt tattgccgct      5520
     attagatctt acatacggga ggatcagaag gactgggatg agcatctcag tagcatttgt      5580
     tgtgctctca ggtccgcggt acactcaagt ctaggtacca ccccgtatta tatggtcttt      5640
     ggccaacatt ttatgacctc gggggcgaca tacaaattac ttagggctct gtccttattg      5700
     gacgacaagt cgataagctt ttcgaggcag gactccttgg agattgtgcg gcagcaggcc      5760
     ttgaaagtaa tgaggagaca acaggaaaag aatgagcgaa attataatct tcgctcgaga      5820
     tcggtggcct acagcgaagg acaagaagtg ttccgaagaa attttaaaca gagcaatttc      5880
     caaacgggct ataatgctaa gttgggacca gcttttgtga aggcccgagt gaggagaaag      5940
     atagggaatg cctattatga gttggaggat ctacagggcc ggctgattgg gaaatatcat      6000
     gcaaaggaca ttcgacagta ggatgtgcaa gtgctgtggt gatcatcctt gggaaattga      6060
     aaccccaagt ctgatcttga ggggggaata tttat                                 6095
//
ID   Gypsy-33_DAn-LTR repbase;    DNA;    INV; 1877 BP.
XX
AC   AAPP01015632;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_DAn_;
KW   Gypsy-33_DAn-LTR; Gypsy-33_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1877
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015632; Positions  245602  247478.
XX
SQ   Sequence 1877 BP; 539 A; 392 C; 477 G; 469 T; 0 other;
     tgtagcactt gccatgacgg ggagcgacac ctatgagccg cagttggcgg agggtggcgc        60
     catctatgag aaaaggttta gcgtaggtat tgggggagcg cctggaacaa aacgaattcc       120
     ggtagttcgc catttgtgga ccccaggagc cagcccgccg aaaatccggc gtcggtccgc       180
     ttatgggtat gggtgggatc attcccaagc aagatctgca acaagccaga cgtgtcagca       240
     aggcgctaag cagcaaaacc acggggaaaa aaccaacaat attcgaagat cccgccggca       300
     gttgtgacaa ttaattttgg ggacgctcaa aggctcccaa ttgtccaccg gcgtcagtaa       360
     accgagtgta gaggtggaag tggtggctcg aggaaaaccc aggggtgagt gtttgaaggg       420
     tcagggaaga gcactgaatc acgaatccca gttttagcag gccgagcaaa agtccgagtg       480
     gactattccg tgtcccctat taaagaactc caggtggctc aactaaggaa gtccaaccaa       540
     aggcggacgg aggagcaccg aggaaggaga agaaatcccg gcctaaaata ggctaaccgc       600
     agcaagttcg cttcgaaccg aagctaggtt cgagcgaacg gaggagcgca gaggaggcgc       660
     taaccgcagt gtagcgcgag attcaagtac gggagggagg aaaacctcgg aggagtcccc       720
     ctgaaaaagg tccagtttcg gatccggccg tagtgtccct gaaagtgatt ttgaggagcc       780
     aatttagtga ttcagtcaaa ccaaagtgaa atgcataaaa tttaggcaag aaaaaaaaaa       840
     aaaatcggaa gagaaccgaa gaaaaaaaaa tgtaaggaag ccaagaaaaa ttaacgtaac       900
     gtccctaatg gcctgatcgg gaaacaaggc tcgtcagaag aaagttatag tcactaccaa       960
     ttgtgtttgt tgtcgtggtt ttatttattt gtgcgcccca ttggggaaat ttttgtatag      1020
     tctaaaacct ttgtttcagc gacccctcga aagcgctttc gtcgtgggat gcatcaagga      1080
     atgtccagtg agtaaaacct gccaatttgt ttgtgacaat tttgttttga ttttgatcct      1140
     tggggtcccg gcaaatttgg actctaagag tcgccagtta tctaagggcg tttggttcct      1200
     ttaaattttt tttgggttta aaagagaaaa caaaaaaaaa aaaaaataat acttaatgca      1260
     cattcttttg ctttgatttg tgattctaat tcctaatttt attaaattca ttaaatttta      1320
     actagtccta tttgtaatgc caatgctaag attttatgta cgcctggata tttatatctc      1380
     ttatttattt atttaaattg tattagctta agtttttttg catttgccat gattcaattt      1440
     tatatttatg ttctttagta ataataaata ttttataatg ttttaaaccc cgtattatgc      1500
     tgcagctagc cgatatgaag tagtaggggt acccatgaaa aggggtcgct cgcaggatgc      1560
     gggaagcgag cgatcatagg tagggtgggc acgcgagagt cgccccatga cacctgggtg      1620
     actcgtaagt aaggcgcagg aagggaaccc ccccccccat ctcttatcat ccgaggatat      1680
     cgggactctt tccggagagt agatatttcg tcgcgagcac gcatttaaag tttgatccct      1740
     acccggagag gcacccttgg gaaccggcaa ataacacccc ccttgccgac gagccgaagc      1800
     cggatattcc agcgtgcgct ggttcccagg ttttaccacc cgcctccgcc catagatgat      1860
     tttaggagtt cgttaca                                                     1877
//
ID   Gypsy-33_DEl-I repbase;    DNA;    INV; 6992 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_DEl-I.
XX
NM   Gypsy-33_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6992
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 474-474 (2012).
XX
RN   [2]
RP   1-6992
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2568..5360
FT                 /product="Gypsy-33_DEl-I_2p"
FT                 /note="envelope protein."
FT                 /translation="KIPEHADEEFSVNKKLKRLGTQNPQRADVELSVNKKV
FT                 TTSGSKDSERNKINNIKMLNSNQVEDLEKRIIDIIEEEHSKINLQIPFRTD
FT                 IRGEINTNNDRAIYSKQYPYALSVSDFVNNEINRMINENIIRPSRSPYNSP
FT                 VLVVPKKGQNEDGSPKHRLVIDYKKLNENTIPDRYPMQDPSVILANLGKAK
FT                 FFSTIDLESGFHQILMKDSDIEKTSFSINNGKFEFLRMPFGLTNAPRIFQR
FT                 AMDDILREQVGKTCHVYMDDIIIFSNTIEQHFSDLTQIIGILQRANMKISL
FT                 EKSKFFKLETSFLGYIVSFNVIKTDPEKISTISRYPLPQNIRELRSFLGLT
FT                 GYYRKFVRNYAKIAKPLTKYLGGENGNVSKRISTKVLIQLDDSAIQAFNEL
FT                 KENLIAQVELVQPDYSKKFTLTTDASDVAIGAVLSQDNKPITFISKTLNKT
FT                 EQLYATNKKELLAIVWALKNLRNYLYGVIGIEIQTDHQSLSFTISDKNPNV
FT                 EMKRWYSFIESFTPKIIYKPGTTNVVADALSRIQINNITNSDVEQTEQSDS
FT                 DQNTQHSADSSFENVIQETRKPLNQFKQQLLLTTGRFTIHESLEVFGRTRH
FT                 IIEYDTPENLITILKEYIPPNITVGIHCTLEDLYHIQLPLKNNFTNPFLFT
FT                 RIFLQDIENDEDKAIIIEETHSRAHRGLDENYKQISRLYYWPNLFKKLKEY
FT                 IKNCVICNENKYNRHPIKIPIGEAPIPTKEGENLHIDIYYAQNLTFITCID
FT                 AYSKYLVVKEIQNKLNIEIKVMELLQQFPQAKVIMTDNEPSFTSAQFKSFA
FT                 QRCGITLHYADPRHSTSNGQVERAHSTLTEIARCIKEEFNLTNFSEIVIRA
FT                 AQKYNQSIHSTTNEKPFDILYNKIDHDNIPIILKNTQSRMLETHNENRKEK
FT                 DYHVGQVVYEKKHGERNKLKSRYKNKL"
FT   CDS           5697..6854
FT                 /product="Gypsy-33_DEl-I_3p"
FT                 /translation="MDLELIKLTLSEIMPKRQKRGINEIGTLWKWIAGTPD
FT                 HDDFITVQNKIDSLIENNNKQFTINSKLFNEVKYLTESLKNVVFNEETILR
FT                 KHRLRLLTFDLQNLLDTIILAKAKIFNTKILNENEIKEIYNHEKQSVVLSD
FT                 LMDISTFKILLNNDLLVVYIKYPMINGKCDLYKTRAIAKSDGKLLINNEVA
FT                 NCKNKYYLMTNFKKEMFNNYCKLSFETNCFIKLLNGEKANCSKIREINNKI
FT                 DILQDGAILITGTNIVDNTQLKGSYLILFNDSIIINNSTYINSENKILNYI
FT                 AQHKFINYDISEYIASNNSELTLDNINIINPFVKINNTKISVSFILLIFII
FT                 IFLILLLYIIYRNFVTKKQRPELEISTNQEKVLKKKIQTKMKF"
FT   CDS           join(677..1558,1471..1968,1932..2237)
FT                 /product="Gypsy-33_DEl-I_1p"
FT                 /translation="MTDKPSTSKMANQELEKQAFLTKELIKQIVSTEVNSL
FT                 KNEIETLKAELQTNVNKVEDYKIEEVDNLIKCEESYEIIKSVPEFKGELEN
FT                 YVSWREAAENAMSQYIRKSKRYFAALSILRNKITGKANDALTIHGTVLNFD
FT                 AILARLDFVFSDRRPLHIIEQELSILTQGKLSVMEYYNQVYRKLTLLTNKT
FT                 IMTYGRNKPITSEINDRHRQSALRVFITGLNGPISSTLYSMNPTDLPNAMA
FT                 FVQEMESNNMRAKFAHNFVGMSYRNITQIIVMAQNKIIILLIKRPLITIIQ
FT                 TIKYNSNYSNGPEQNNNSFNQKTTNYNNSNYLRYNQRSPQQVKNNQWNQSQ
FT                 NNNNQWGQNNNWKFNNNQVQPAPEPMEIDESIQYQIRPNNNFNRGNNNRQN
FT                 YNNYYPRNNYNQNQAQKTNISATQNKPFESHPQLKREPTGSINQPAQKIMR
FT                 VNNIEEDHFLDQNPEYRRGSFFRSESGVGLPYLMRTDKKIEKELKVLIDTG
FT                 ATSCYIKRGIYQNKKELPIYKRVSTINGFTIIKYYHLITIFNTRQVFYEIE
FT                 GLESDLLIGFNLLKK"
XX
SQ   Sequence 6992 BP; 3012 A; 1085 C; 1027 G; 1866 T; 2 other;
     ggcgcccaac gtggggcggt gataaaaaag ttctaaaaaa attattaatt ataacaagtt        60
     aatataaaaa aggaacttac gccgcaaaaa cccaaccatt tttagtggaa aaattaaaac       120
     atccacaaaa accaacgaca cccaacattg tgaaagtgat cgtgattaaa aaatttaaat       180
     ggaaatcaat taatgcaata atccatttaa atagctggta ataaaggtgg accgaaaaaa       240
     ttaattcaca gtacaagaac acacaacaaa aaacaaataa ataaagaaca ataaatcaaa       300
     aataataaaa atactaaaca aaaacacaat taataaagaa agttaaacaa aaacacaaat       360
     atatcaactg gaagaataaa aacagaaata tttcatttaa acaaagaagg aaggaaggaa       420
     gggctggaaa aagaaggaag gaagctgaag ggcattccct cgccaaaatt caacacgact       480
     acaacgaaaa taacaaagaa ggaaggaagc tgaagggcat tccctcgcca tcatcaaaga       540
     agataagctt aataattaaa agatcgtaag aaatatgaac aattatattt aagtaaaaat       600
     tcaatttgaa agatawatta tataatacat cctggaagat atagaagatt tgttgaatct       660
     atttaataaa ttagaaatga ccgataagcc aagcacaagt aaaatggcga atcaagaatt       720
     agaaaagcaa gcctttttga ccaaagaatt aataaaacag attgtttcaa cagaggtaaa       780
     ttctttaaaa aacgaaatag aaacactgaa agcagaactt caaacgaatg tcaataaagt       840
     agaagattat aaaattgaag aagttgacaa tttgataaaa tgtgaagaat cctatgaaat       900
     cattaaatca gttccagaat ttaaggggga acttgaaaat tatgtgagtt ggagggaagc       960
     agcagaaaac gctatgagtc agtatattcg aaaaagtaag cgatatttcg cagcactatc      1020
     aatattaagg aacaagataa caggaaaagc aaacgatgct ctaaccatcc acggaacagt      1080
     cctaaatttt gatgctattt tagccaggtt agatttcgtt tttagcgata gaagaccgct      1140
     acacattatc gaacaagaac taagtattct tacacaagga aaactaagtg taatggaata      1200
     ttataaccaa gtttacagga aactaacatt actgactaac aaaactataa tgacatatgg      1260
     tcgtaataag ccaatcactt cagaaattaa tgatagacat agacagagtg cactaagagt      1320
     tttcataact ggccttaacg gcccaatatc atcgactctt tattccatga atccaactga      1380
     cttgcctaat gcaatggcgt ttgtacagga gatggaaagt aataatatga gagcaaaatt      1440
     cgctcacaat ttcgttggaa tgagttatag aaatataact caaattatag taatggccca      1500
     gaacaaaata ataattcttt taatcaaaag accactaatt acaataattc aaactatttg      1560
     agatacaatc aaagatctcc gcaacaagtt aaaaataatc aatggaatca gagtcagaat      1620
     aataataatc agtggggaca aaataataat tggaagttta ataacaatca ggtacagcct      1680
     gctcctgaac ccatggagat agatgaatca atccagtatc aaattcgtcc taataataat      1740
     tttaacaggg gtaataataa cagacaaaat tataataatt attatccaag aaataattat      1800
     aatcaaaacc aagcgcaaaa aacaaatata agcgccactc aaaacaaacc atttgaatca      1860
     catccacagt taaagcggga accaactggt tcaattaatc agcctgctca aaaaattatg      1920
     agagtaaata atatagaaga ggatcatttt ttagatcaga atccggagta ggattaccct      1980
     acttgatgag aactgacaaa aaaatcgaaa aggaattaaa agttttaatt gacacaggag      2040
     caacatcttg ttacataaaa aggggaattt atcaaaataa aaaagagctc ccaatttaca      2100
     aaagagtttc aaccattaat gggtttacaa taataaaata ttatcattta ataacgatat      2160
     ttaacacaag acaagtattt tatgaaatag aagggttaga gtccgaccta cttataggtt      2220
     ttaatctttt aaaaaaatag gagcggtaat tgatattcaa aaagggacca tcaaatataa      2280
     cggaaaaaag aaaaattact ttacgatgag gataattctt taaaccaatt atcgctaaca      2340
     aatggaaaaa ttatccttcc attgaaagaa tatattataa aaaaatactt tgaagagcaa      2400
     agtggaaaaa cagatcacaa aggtggaaaa ttaacttggg cacagaatcc tgagcaaacc      2460
     gaggtggaat tatccgtcaa caaaagtcat ttagcttggg atccaaaaat cctgaacacg      2520
     ccgacgtaga aaaatccgtc aacaaaaaat catatagttt gggataaaaa attcctgaac      2580
     acgccgacga agaattttcc gtcaacaaaa agttaaaacg tttgggaaca caaaaccctc      2640
     aacgcgccga cgtcgaacta tccgtcaata aaaaagtaac aacttcggga tcaaaggatt      2700
     ccgaaagaaa taaaataaat aatattaaaa tgttaaattc aaatcaagta gaagatttgg      2760
     agaaaagaat aattgacata attgaagagg aacactctaa aataaaccta caaattcctt      2820
     ttagaactga tattcggggc gaaataaata caaataacga cagggccatt tatagtaaac      2880
     aatatcccta tgctttatca gtttcagatt tcgttaacaa tgaaatcaat agaatgataa      2940
     atgaaaatat tataaggccg agtagaagtc cttacaattc accagtactg gtggtaccca      3000
     aaaagggtca aaacgaagac ggtagcccta aacacagact tgtaatagac tacaaaaaat      3060
     taaatgagaa cacaataccg gatagatacc cgatgcaaga cccatctgtt atattagcca      3120
     acttaggaaa ggcaaaattt ttttccacaa ttgatttgga atcaggattc catcaaattc      3180
     taatgaaaga ctcagatatt gaaaaaacat ctttttctat taacaacgga aaatttgaat      3240
     ttttacgcat gcctttcggg ttaaccaatg cgcccagaat tttccagaga gcaatggatg      3300
     atattctcag agaacaagta ggaaaaacat gccacgtcta catggacgat attataattt      3360
     tttcaaacac aatcgagcaa catttctcag atttaactca aataataggc attttacaaa      3420
     gagcaaatat gaaaatttct ctcgaaaaat ctaaattctt taaattagaa acctcctttc      3480
     ttggttacat tgtttctttt aatgtaatca aaacagatcc tgaaaaaatt tccacaattt      3540
     caaggtatcc gttaccacaa aatattagag aacttcgaag ttttctaggc ttaactggct      3600
     attaccgaaa atttgtccgt aattatgcaa aaattgcaaa acctcttaca aaatatttag      3660
     gaggggaaaa tggaaatgtt tctaaaagaa tatctacaaa agttttaata cagttagacg      3720
     attcagctat acaagctttt aacgaactaa aagagaatct aatagcacaa gttgaactag      3780
     ttcaaccaga ttatagtaaa aaattcactt tgacaacaga cgcatcagac gtagctatcg      3840
     gggcggtatt atcacaggat aacaaaccaa ttactttcat ttctaagaca cttaataaaa      3900
     ccgagcaact ttatgccaca aacaaaaagg aactgctagc catagtatgg gccttaaaaa      3960
     atttgagaaa ctatttgtac ggagtaattg gtatagaaat ccaaacggac catcaatctt      4020
     tgtctttcac gatttcggac aaaaatccca acgtagaaat gaaaagatgg tattctttca      4080
     tagaaagttt taccccaaaa ataatatata aacccggtac aacaaatgtt gtagccgatg      4140
     cattatctcg aatacaaata aataacatta caaacagtga tgtagaacaa acagaacagt      4200
     cagactcaga tcaaaacaca cagcattctg ctgacagtag ttttgaaaat gtaatacaag      4260
     agacccgtaa accgttaaat cagtttaagc aacaactgtt attaacaacg gggaggttta      4320
     caatacatga gtcactggaa gtttttggca ggacacgaca cataattgaa tatgatacac      4380
     cagaaaattt aataactata ttaaaagagt atattccacc aaacattacg gtaggaattc      4440
     attgtacatt agaggactta tatcacattc aattaccctt aaaaaataat ttcactaacc      4500
     catttctttt tacgagaatc tttcttcaag acatagaaaa cgatgaagat aaagccataa      4560
     ttatagaaga aacacacagt cgagctcata ggggtctaga tgaaaattat aaacaaatca      4620
     gtaggttata ttattggcca aacttattta aaaaattgaa agaatatatc aaaaattgtg      4680
     tgatttgtaa tgaaaataaa tataacaggc acccaataaa aattccaatc ggggaagccc      4740
     ctattccaac taaagaagga gaaaatttac atatagatat atactacgcg caaaatttaa      4800
     catttattac ttgtatagac gcgtattcaa aataccttgt tgtaaaagaa attcaaaata      4860
     agttaaacat tgaaattaag gtaatggaac tacttcaaca atttccccaa gcaaaagtaa      4920
     ttatgaccga taacgaacct agttttacct cggcccaatt taaatcattt gcacaaaggt      4980
     gtggaattac tttgcattac gcagacccaa gacacagtac ttcaaacgga caagtagaaa      5040
     gggcacactc gacattaaca gaaatagctc gctgcataaa agaggagttt aatttaacta      5100
     atttttccga aatagttatt agagccgctc aaaaatataa tcagagcatt cattccacaa      5160
     caaacgaaaa accatttgat atcctatata ataaaattga tcatgataat attcccatta      5220
     tcttgaagaa tacacaatct agaatgttag aaacacataa tgagaacaga aaagaaaaag      5280
     attatcatgt aggacaagtt gtttatgaaa agaaacatgg ggaacgaaac aaacttaaat      5340
     ccagatataa aaacaagttg taaaggaaaa tctaacaaaa taataatcaa caatagaaat      5400
     aggattattc ataaagataa tattaaattc taatataaac aacaatattt tatttttttt      5460
     ttccagaaaa atgttttttc agtacttata ctcaacctat tacttttaac aagttctgaa      5520
     ataattgtac aagtcacgaa tatttattat ttaaggacaa taaagacgta ttgacgtacg      5580
     attcatacgc agatttattk cacataacta atttaagttt ttatgaagaa ataattaaca      5640
     cggaaaccag atctttgacc aaaacatcaa aaacagacat agaatgggaa atttcaatgg      5700
     acttggaact catcaaatta actttatcag aaataatgcc aaaaagacaa aaaagaggaa      5760
     ttaatgaaat aggaacttta tggaaatgga tagcaggtac tcctgatcat gatgatttca      5820
     taacggttca gaacaaaata gacagcctaa ttgaaaacaa caacaagcaa ttcacaataa      5880
     attcaaaatt atttaatgaa gtaaaatatc ttactgaaag tttaaaaaat gtagttttca      5940
     acgaggaaac aattttacga aaacatcgtt tgcggttact cacatttgac ttacaaaatt      6000
     tattagatac tattatctta gcaaaagcaa aaatttttaa tacaaaaatt ttaaacgaga      6060
     atgaaattaa agaaatttac aatcatgaaa aacaatctgt agtattatct gacctaatgg      6120
     acatatcaac ttttaaaatt ttattaaata atgatttact tgtagtttac ataaaatatc      6180
     ccatgattaa cggtaaatgt gacctttaca aaacaagagc tattgcaaaa tccgatggaa      6240
     aattattaat aaataatgaa gttgccaatt gcaaaaacaa atattaccta atgactaatt      6300
     ttaagaaaga aatgtttaac aactattgta aattaagttt tgaaactaat tgttttatta      6360
     aattattaaa cggcgaaaaa gccaattgct ctaaaataag agaaattaat aataaaatag      6420
     atatcttaca ggatggtgcc attttaataa caggaacaaa tatagtagac aacactcaat      6480
     taaaaggttc atatttaatt ttgttcaatg actcaattat cattaataac agcacctaca      6540
     ttaacagcga aaacaaaata ttaaactata tagctcagca taaattcata aattatgaca      6600
     tttccgaata tattgcttca aataattcgg agctaactct tgacaatata aacattatca      6660
     atccatttgt aaaaattaat aataccaaaa tatcagtttc ctttatatta ttaattttta      6720
     tcattatatt tttaatatta ttactttaca taatatacag aaattttgta accaaaaaac      6780
     aacggccaga actagaaatc agtacaaacc aagaaaaagt tttaaaaaag aaaatacaaa      6840
     ccaagatgaa attttaatag aagaaaacac aaaccacgaa gaaactttta aagaaaaaga      6900
     tacaaaccaa gaccaatgtt ttttttcaaa actaagagaa cgcttaaaag aaattcataa      6960
     tgaatcgggg cgatccattt tagaaggggg ag                                    6992
//
ID   Gypsy-33_DEl-LTR repbase;    DNA;    INV; 552 BP.
XX
AC   .
XX
DT   03-JUN-2019 (Rel. 24.06, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_;
KW   Gypsy-33_DEl-I; Gypsy-33_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-552
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 19(6), 1063-1063 (2019).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 552 BP; 197 A; 101 C; 85 G; 169 T; 0 other;
     agttaaccaa cccgtgaaac cgggccgctt atggaattaa taaacaattt tttcaaaatt        60
     caatttaaac aatcttcgcc tatgcctttg catttgcctt tgtctttgcc catgcctttg       120
     gctttggggt ccgctcttga tttccctacc aaataaacaa acaaatccta aagtaaacat       180
     aagtttccac tcgaagccca atcaattgcg ttataagttc aaactattgc gatccaagcc       240
     caaacaaatt gcatcggtca gcatatttga atttcacaat aggatgccat gatttcatcc       300
     taagcttata ttctaaacaa aaggaaaagt tcgagaagct caaagaaaag cttctggccg       360
     aggttcattg gataagattt tagaattaag ccggcagtcc atctttgatc aagaaacagt       420
     tcggaagtaa gaaattcgat tgtgaaaaat taagtgtatt gtacttgtga aattaaataa       480
     aaaggtttaa caccaagtta caaaaaataa aaatatattt ttttaacaat attactagtg       540
     ataaatttaa tt                                                           552
//
ID   Gypsy-33_DMel-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-312
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   A putative LTR region.
XX
SQ   Sequence 312 BP; 86 A; 72 C; 73 G; 80 T; 1 other;
     agttaacacg cagcacttgc ttccccctcc cgacgctgcg gtmgagctct gcagcgtacc        60
     gctgacgatg tagcataggc tgcgagtgtg actgcgctga cactgtgggg cttggcttag       120
     cgtagcttac gagcggccgg caaaacgctg gccaggtagt cgaatttcag cagcggaact       180
     tagctaatct ttaaatctaa ctttgtactt aaattaaata aaactaagaa tctgagcaag       240
     tcgaagcttt catttcgata caatctcatc tcaaagaatg caaggaaaat ttccaaggta       300
     gtattgttaa ct                                                           312
//
ID   Gypsy-33_DWil-I repbase;    DNA;    INV; 4208 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_DWil_;
KW   Gypsy-33_DWil-LTR; Gypsy-33_DWil-I.
XX
NM   Gypsy-33_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4208
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..4207
FT                 /product="Gypsy-33_DWil-I_1p"
FT                 /translation="MLRSGKKKGAKNQKESNYQVQMDSLNSTFTSNVEITE
FT                 QPDLKVVSARETDIYPCASRNDADESRQTGAEETKSEDGNADNICTSVRSS
FT                 ELETLIRMLAVKFEDSGSQRNDKFSNVTVDSFAKVVPDFDGTSIPIGQWLK
FT                 NFEENAEAYQLSEKQKYVNARNKMMGTAKLFLETIVIGNYEELCIALMDEF
FT                 DQKLSSAEIHKQLRSRKKLQSENFHDYVLQMRKIAALGEIEDESIITYIVD
FT                 GLEVREDLKYPLYSSTSFKQLRKCYDLVETMTRNAQNKRRQIVHTKPVVQA
FT                 DSNYKGKQLHCFNCGATDHKKADCNVGTKCFKCNGIGHISKDCPERKHQVN
FT                 IVRKSDEDSRLKEFSIDGKKVICLVDTGADVTIMRRDKYEELFLDRQMQNH
FT                 VEKLFGLGNVVTEVIGEVTTTVKVDGLSTEHKILIVPNSKLEADVLIGYDF
FT                 VKKFTVMMDPNGCTFSLHADEKNQLNVLNVVSSVNEIDVEPKYADTVAALI
FT                 KDYKPKDNPLSCPIMLSILPNCNNIVFRESPSRLSANEQTVVKDQVEEWLK
FT                 QGIVRQSNSDVASRVVLAKKKDGSHRLCIDYRKLNTLVLKDRFPVPIVEDV
FT                 LEKMQQAKYFTVMDLKNGFFHVDIEEESRKYTAFVTKQGLFEFNKAPFGFC
FT                 NSPAVFVRFIYYIFQKLINAGIMEIYVDDIVVFGSTAEECLDNVKTVLEEA
FT                 RKYGLQIKWSKCQFLKRRINFLGHEIEDGVVCPGKEKVKAVKNFQLPKNIR
FT                 GVQAFLGLTGYYRKFIRDYAIIAKPLTTLLKKDAEFRMDSPQVKAIEKLKE
FT                 CLMNKPVLKIFKHSAETQLHVDASKNGFGATLLQQHDDKWHPVFYWSKKTS
FT                 DQEEKLHSYFLEVKAAYLATKKLRHYLMGIEFVLVTDCAAFKMTAAKKDMP
FT                 RQVVQWLMHLEDFSCKIEHRAGDRMKHVDSLSRFPVMIVTTEVHAQMLRAQ
FT                 SNDEKFAAVFEILQHKPYADFKVKNKLLYKQVDGLDLLAVPKSMEKEIIRN
FT                 THNFGHMGVQKTKHAIQQDYYIPHLDKKVGQFIANCVQCITHNRKLGKQED
FT                 FLHCIDKGEVPLETLHVDHLGSLDPTSKNYKYIFAVVDGFSKYTWLYPTKS
FT                 TDASEVVKHLTDWVTIFGNPRRIVSDRGAAFTSKHFKEFCTNHKIEHVETT
FT                 TGVARGNGQIERVNRVILSVLAKMSAAEPQKWYRYTGQVQRTINSNVHSST
FT                 KFTPFEVMFGLKMRNESDLELQRILEEELLDGLQNERNQIRAEARQQILEA
FT                 QTRYKRHYDQRRKPCHGYQLGDLVAIKVTQFVSGKKLSNKFIGPYEIIKVK
FT                 RNGRYEVKKSAEFQGPNQTSTSEDNIKLWRYMENNDESDLEGSSEADDLQD
FT                 DR"
XX
SQ   Sequence 4208 BP; 1500 A; 709 C; 958 G; 1041 T; 0 other;
     tgggggctca accgctcaac cggtgaaaca aaaaagaaaa agaacagaac tgtaatacaa        60
     gttgaaaaag gtgaaaaaag tgaaaagaag agacagaata aagttgataa aaatgttgcg       120
     ttctggaaag aaaaaaggtg ccaaaaatca aaaagagtct aactaccaag ttcagatgga       180
     cagtttaaac agtacattta cgtcaaatgt tgaaataacg gagcaacccg atttaaaagt       240
     ggtaagcgca agagagacag atatataccc atgtgcttcc agaaacgacg cagacgaatc       300
     gcggcagact ggcgccgaag aaacgaagag tgaagatgga aacgcagaca acatatgcac       360
     gagtgtgcgt agcagcgagt tggagacgct gatcagaatg ttggcagtta aatttgaaga       420
     cagcggttcg caacgtaacg ataaattttc aaacgtaaca gtcgatagtt ttgcgaaggt       480
     ggtgccagac ttcgatggga catcaattcc aattggacag tggctcaaga attttgaaga       540
     aaatgcggag gcatatcagc tgagcgagaa acaaaaatat gttaacgcac gtaataaaat       600
     gatgggcact gcaaagttat ttttggaaac gattgtaatt ggcaattatg aagaattgtg       660
     tatagctctg atggacgagt ttgaccaaaa attaagcagc gcagagattc ataaacagtt       720
     gagaagtcgc aaaaagttac agtcagaaaa ttttcatgat tatgtattac agatgcgtaa       780
     aattgctgct cttggtgaaa tcgaggacga atcgattatt acatacatcg ttgacgggct       840
     ggaggtacga gaggatttga aatacccatt atatagttca acttctttta agcagctaag       900
     aaagtgctac gatctagtag aaacgatgac cagaaacgcc caaaacaaac gtcgccagat       960
     tgtccatacg aagccagttg ttcaagcgga ttcaaactat aaaggtaaac agttgcattg      1020
     cttcaactgt ggagctacag atcataaaaa agctgattgc aatgtgggta ctaaatgctt      1080
     taagtgtaac ggcataggcc acatatcaaa ggattgtcct gaaaggaagc atcaagtaaa      1140
     tatagtacga aagtccgatg aagacagccg attaaaggaa ttttcgattg atggcaaaaa      1200
     agttatttgt ttggtggata ccggcgcaga cgttactatc atgagacgag acaaatacga      1260
     ggaacttttt ctggatcgtc agatgcaaaa tcacgtcgaa aaattgtttg gtcttggaaa      1320
     tgttgttaca gaggttatag gcgaggttac tactacagtc aaggtggatg gattgagtac      1380
     agaacacaaa atactgatcg tccctaactc caaattagaa gctgatgtac ttattggata      1440
     cgacttcgtc aaaaagttta cggtgatgat ggatcccaac ggatgtacgt ttagccttca      1500
     cgctgatgag aaaaaccaat tgaacgtttt aaatgtggta agctctgtaa atgaaattga      1560
     tgtagaacca aaatatgctg atacagtcgc tgcattaatt aaggactata agccgaaaga      1620
     taacccgtta agttgcccga ttatgttaag tatattgcca aactgtaata atatcgtatt      1680
     tagagaaagc cccagtcgtc tatcggcaaa tgaacagaca gttgtaaaag accaagtaga      1740
     agagtggcta aagcaaggaa tcgttcgtca gtccaactca gacgtggcaa gcagagtagt      1800
     actagcaaaa aagaaagatg gatcgcacag actgtgcata gattatcgaa aattaaacac      1860
     gctcgtattg aaggatagat ttccagttcc aatcgttgaa gatgtgttag agaaaatgca      1920
     acaagcgaaa tactttacag tcatggatct taagaacgga tttttccacg ttgacataga      1980
     agaagaaagt cgtaaatata cagcattcgt gacaaagcaa gggcttttcg aatttaataa      2040
     agcgcctttt gggttttgta attccccagc agtttttgta agattcattt actacatttt      2100
     ccagaagttg ataaatgcag gaattatgga aatttatgtt gacgatattg tggtattcgg      2160
     atctacagca gaagaatgtt tggataatgt taagactgtt ttagaagaag cacgaaaata      2220
     tggtttacag atcaaatggt cgaaatgcca gtttctaaaa agaagaatca attttctggg      2280
     ccacgaaata gaagatggag tagtatgtcc gggtaaagag aaagtcaagg cagtcaaaaa      2340
     tttccaattg ccgaaaaata tcagaggtgt tcaggcattt ttaggactaa caggctacta      2400
     tagaaaattc attcgtgatt atgcaataat agcaaaaccg ctgaccacgt tgctaaaaaa      2460
     agatgcagag tttagaatgg acagtcctca agtaaaagcg attgaaaaat taaaagaatg      2520
     tctgatgaat aaacctgttt tgaaaatttt caaacactca gctgaaacgc aattacatgt      2580
     agatgcatca aaaaacggat ttggtgctac gctcttgcag caacacgatg ataagtggca      2640
     ccctgtattt tactggagca agaaaacaag cgatcaggag gaaaagttac acagttattt      2700
     tctggaggtc aaggcagcat acctagctac gaagaagttg cgtcattatt tgatggggat      2760
     tgagtttgtt ctggttacag actgtgcagc tttcaaaatg acagcggcga agaaggatat      2820
     gccccgacaa gtcgtacaat ggttgatgca cttagaagat ttttcctgta aaatagaaca      2880
     tcgtgccggc gataggatga agcatgtcga tagcttaagt cgctttccag taatgattgt      2940
     cacaacagaa gtacacgcgc agatgctaag agcacaaagt aatgatgaaa agttcgcagc      3000
     agtattcgag attttacaac acaagccgta tgccgatttt aaagttaaaa ataaactttt      3060
     atataaacag gtcgatggat tagatttgtt agcagtcccg aaaagcatgg aaaaggagat      3120
     aataaggaat actcacaact ttggacatat gggtgttcaa aaaacaaagc atgctattca      3180
     acaagattat tatattccac atttggacaa aaaagttggt cagttcatcg caaactgcgt      3240
     tcagtgcata acacacaaca gaaagttggg caagcaagag gattttttac attgcattga      3300
     taaaggagaa gttccactgg agacgctaca cgttgatcat ttagggtcat tggatccaac      3360
     ttcgaagaat tacaagtaca tattcgcagt cgtagatggg ttctctaaat atacatggct      3420
     atatcctaca aaatcgacag atgcctcgga agttgttaaa cacttgactg attgggtcac      3480
     aatttttgga aatccacgtc gtatcgtcag cgatagaggt gcagcattta cgtctaagca      3540
     ttttaaggaa ttttgtacga accataagat cgaacacgtc gaaaccacta caggagttgc      3600
     aagaggaaac ggacaaatag agagggtcaa cagagtcata ctttctgtct tagccaagat      3660
     gtcagctgca gagcctcaga agtggtacag gtacaccgga caggtacaac gtactataaa      3720
     ctcgaatgtt cactcgtcga ccaagtttac gccttttgaa gttatgttcg gattgaaaat      3780
     gagaaacgaa tcagatcttg agttacaaag gattttggaa gaagaactac tagatggact      3840
     tcagaatgag cgaaatcaaa taagagcaga agcaagacag caaatactag aggcacagac      3900
     cagatacaag cgccattacg accagagacg caagccatgc cacggttatc agttgggcga      3960
     cctagtagca attaaagtca cacagttcgt gtcgggcaag aagctgtcga ataaattcat      4020
     tggtccatac gaaatcatca aagtaaagag aaatggtagg tatgaagtca aaaaatctgc      4080
     tgaatttcag ggtccaaatc agacgtccac cagtgaagac aacattaagc tttggcgtta      4140
     catggagaac aacgatgaaa gcgatctcga aggatcatct gaggcagatg atttgcagga      4200
     tgaccgaa                                                               4208
//
ID   Gypsy-33_DWil-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   scaffold_181130;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_DWil_;
KW   Gypsy-33_DWil-I; Gypsy-33_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-304
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181130; Positions  821215  820912.
XX
SQ   Sequence 304 BP; 104 A; 46 C; 63 G; 91 T; 0 other;
     tgtagtgtca tatggctaca tatgtgctga gagatggcag ccctggatgc ggtgcgacaa        60
     tgtggcataa tcagtcgata agaagaaaaa atgagagaag gaacgataga gaacagacgt       120
     ataggccgaa ggtgtacaaa agtcgcttaa gttgtatttc aagttgttac agtcgtaaag       180
     ttgctaaaag ttgtcatcta aagttgttaa gtctaagttc tttttatcct aatttcaacc       240
     gactattttg ctatatatct aactaataaa caacaattat tgtatacacg caataattct       300
     taca                                                                    304
//
ID   Gypsy-33_HeAr-I repbase;    DNA;    INV; 4225 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4225
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5580-5580 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..4126
FT                 /product="Gypsy-33_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNTGATFGVLTTFDHSSQEWNNFKLRLEQWFIANNIN
FT                 FETDKATIKRRAILLTSLCESTFKLTSDLALPNKVEELGYDAIVKLLDSHF
FT                 TPKRFGFAEKSIFYAASQRPGETHTQWAARIRGLATHCAFKNLEEALLDKF
FT                 IMGMSPGRERDKLFVQDQRELTLAKAIDLAESVRCARQASAMPAAAGGPAA
FT                 AAADGVFSISKKEKCSVCGFTNHKSNQCRYKNFKCKKCNNKGHLRKMCPNE
FT                 GKVKYVEQGTVDDSDDDGECFYNIRCTKGKPMTERVTVSGLALEFEIDSGS
FT                 AVSVISERTYNSNFKQLPLSITKKRLYSYTGENIVTIGVVLLPISYLGRTH
FT                 TLNVYVVRADGPPLLGRDFIREFNLELAPATAAAAAEPAAARVHVVYQQTP
FT                 CESNISIDKELCKMFPKVFSGNLGSFNKYKIDLHLKHDAHPIFFKARPVPY
FT                 ALREKLDGELDRLLTLGILKPVEHSDYASPVVPVLKKNGSIRLCADYSVTI
FT                 NKQLVIDKYPLPTVNDLLAKLHGGIQFSKIDLSMAYNQFILNEKSQMLTCI
FT                 NTHRGLFKFTRLVFGLSSAPAIFQRAMECLLSGIEGIIFLLDDILITGSNR
FT                 HQHKQRLTTVLQRLDDAGLTVQMSKCEFFKDEISYLGHVIDKHGVRKSPDK
FT                 VKAILQAPKPTNITQLQSFLGLTNYYRNFVPDASSVLSPLYDLLTKNTKWE
FT                 WTRRHNDAFIRIKNILASDKTLAHFDPNAKLILTVDASPSGLGAVLSQVGS
FT                 DELERPISYASRTLSLAEKNYAQIQKEATAIIFGVKRFHQYLYGRSQPFVL
FT                 RTDHKPLLAIFGPYKGIPEVSANRLQRYAIFLAAYNYVIEYISSKQNSADY
FT                 LSRAYGGENETETADELTECEDRAAYVNFVVDGDLPVTLNDLRRETARDTN
FT                 LCTIKHYVLNGWPRKVTDAVLQPFFNCRTQLSYENGILMRGHKVVIPPTLQ
FT                 GNVCKELHSSHFGVVKMKAEARKRLWFPGVDAALERVAGACAVCAALRPAP
FT                 PHAPLAPWPLPPQPFYRIHIDFLGPFHNYMFLIIVDAYSKWVECYSMASTH
FT                 NSKAVINKMNDFMSRFGIPQILVSDNGTSFTSFEFQEFCKLNGIEHLLSPA
FT                 YHPASNGQAESFVKIVKKGLKAIILQGCNKVTIYDKIAKYLFDYRNSKNST
FT                 TDKSPAELVFGRSLRSRLDLLNPFAPSSSSTSTDLTQTVARKQSLQAKHYR
FT                 GVQRPDFKKNDLVWITKNTNNNKVSWLEGIVKEKVGNIMYTVYVPQLNGEV
FT                 TRHMDQIRRRHQCTLVPKPTGEDQDWDSDIIPDVTSPATDHPEPTSQPVRE
FT                 GEATTVAEPASAMPAAPGTDPTPPGTPPETSPRSPRAVSPLRRRAISPIFS
FT                 TP"
XX
SQ   Sequence 4225 BP; 1247 A; 924 C; 1011 G; 1043 T; 0 other;
     agtggcgacg agcggactca tatatcgaaa tatgaacacg ggagcgactt ttggcgttct        60
     tacaacgttt gaccactcat cacaagagtg gaataacttt aagttgcgat tagaacaatg       120
     gtttatcgct aataacataa attttgaaac cgacaaagca accatcaagc gtcgggcgat       180
     actattaacg tcattatgtg aatcaacgtt caagctcact agtgacctgg cgttaccgaa       240
     caaggtggag gaattgggtt acgacgcgat cgtaaaacta ctcgacagcc atttcacacc       300
     aaaaaggttc gggtttgcag agaagtcgat tttctatgca gcaagtcagc gaccaggcga       360
     aacgcacact caatgggcgg caagaattag aggattggca actcactgcg cattcaaaaa       420
     tttggaggaa gctttactgg acaaattcat tatgggcatg tcaccgggac gtgagcgcga       480
     caagttgttc gtgcaggatc agagggagct gactctcgca aaggcgatcg acttggcgga       540
     gagcgtgcgg tgtgcacgcc aggcgtcggc gatgccggcg gcggcgggcg ggccggccgc       600
     tgcagccgcg gatggcgtct tcagtatctc caagaaagag aagtgcagtg tgtgtgggtt       660
     caccaaccat aaatccaatc agtgccggta taaaaatttc aagtgcaaaa agtgcaataa       720
     taaaggtcat ttgcgtaaaa tgtgtcctaa cgagggcaaa gtgaaatacg tcgaacaagg       780
     tacggtggac gacagtgacg acgacggtga gtgtttttat aatattcggt gcacaaaagg       840
     gaaacccatg acagagcgag tgacggttag tggtctagcc ttggagttcg agattgatag       900
     cggttcagca gtaagcgtaa tttcggaaag aacttacaac tcgaatttta agcagttgcc       960
     attgtcaatc actaaaaaac gactgtatag ttatactggg gaaaacatcg taactattgg      1020
     agttgttttg ttgcctatat catacttagg tcgcacacat acacttaacg tgtacgtagt      1080
     gcgcgcagac gggcccccgc tactaggccg cgactttatt cgtgagttca atctcgagct      1140
     agcgccggcg acggcggcgg cagcggcgga acccgcagct gcgcgcgtgc acgtcgtgta      1200
     tcagcaaacg ccttgcgagt ctaatattag tattgataag gagctttgta aaatgtttcc      1260
     taaagttttc tcaggtaatc tcggttcgtt taacaaatat aagattgact tacatttaaa      1320
     acatgatgct cacccaattt tttttaaggc gagaccggtg ccctatgctc taagagagaa      1380
     actagacggg gagctcgacc gattattaac gttaggcatt ttgaagcccg ttgaacactc      1440
     agactacgcg tcgcccgttg tgcccgtgct taagaaaaac ggcagcatca gactttgtgc      1500
     cgactactca gttacaatca ataaacaatt ggtaattgac aaatatccct tgccaacggt      1560
     aaatgattta ttagctaagc tacacggagg catacaattt agtaaaatag atttatctat      1620
     ggcatataat caatttattt taaatgaaaa atcgcaaatg ttaacatgca tcaatactca      1680
     tcgcggcctt tttaaattca cgcgattagt gttcgggttg tctagcgcac cagccatttt      1740
     ccaacgcgca atggaatgtt tactttcagg aattgaagga atcatctttc tattggacga      1800
     tattctgata acgggctcaa atagacacca acacaaacaa agactcacta cggttttgca      1860
     acgcttagat gatgcagggt taacggtaca aatgagtaaa tgtgaatttt ttaaagatga      1920
     gatttcatac ctaggacatg tcatagataa acacggagtc aggaaatcgc cagacaaagt      1980
     caaggcaatt ttgcaagctc ctaaaccgac aaacataaca cagttacagt catttttagg      2040
     tctaacgaat tattaccgta actttgtgcc agacgcgtca tcggtattaa gtccattata      2100
     tgatttatta actaaaaata ctaagtggga atggactcgt aggcacaatg acgcgtttat      2160
     ccgaataaaa aacattttag cgtctgataa aaccttggca catttcgatc caaatgctaa      2220
     gttaatactg acggtggacg catcaccgtc gggactaggt gcggtactgt cgcaagtagg      2280
     ttcggatgaa ttagaacggc ctatttcgta cgcttcccga acgttatcac tagcggaaaa      2340
     aaactacgca caaattcaaa aggaagcgac tgcgatcatt tttggggtta aaaggtttca      2400
     tcagtacctg tatggccgtt cgcagccttt cgtgctcaga actgaccata aaccactgct      2460
     ggctatattt gggccctata aaggtattcc cgaggtatcc gctaaccgcc tacaaagata      2520
     tgctatattt ctagccgcat ataattacgt aattgagtac attagtagta aacaaaatag      2580
     tgcagattat ttatctcgcg cgtacggcgg cgagaacgag acggaaacag cggacgagct      2640
     cacggaatgc gaggaccgcg cagcttacgt gaatttcgtg gtagacggcg atctccctgt      2700
     cacgttaaac gatttgcgac gagaaacagc tcgcgacact aacctgtgta ctattaaaca      2760
     ttatgtgtta aacgggtggc ctaggaaggt tactgacgct gtgttacaac catttttcaa      2820
     ttgtcgaact cagttatctt acgaaaatgg tatattaatg cgaggacata aggtagttat      2880
     tcctccgact ttacaaggaa atgtatgtaa ggaattgcat agttcgcatt tcggcgttgt      2940
     gaagatgaag gcagaggctc gcaagcggtt gtggttcccc ggcgtggacg cggcgctgga      3000
     acgagtggcg ggtgcgtgcg cggtgtgcgc ggcgttgcgc cccgcgccgc cgcacgcccc      3060
     cctcgcgcct tggccgctgc cgccgcaacc gttttaccga attcacatag atttcttggg      3120
     gccgtttcac aactacatgt ttttaattat tgtagacgca tacagtaaat gggtcgagtg      3180
     ttatagtatg gcatcaaccc ataattcaaa ggcagtcata aataaaatga acgattttat      3240
     gtcgcggttt ggtattccac agattctagt gagtgacaat ggcacatcgt ttacatcatt      3300
     cgagttccaa gaattctgta agcttaacgg tatcgaacac ttgttatcac ctgcgtatca      3360
     cccggccagt aatggacaag ccgaaagttt tgttaaaatt gtaaaaaagg ggctgaaggc      3420
     tataatttta caagggtgta acaaagtaac gatatacgat aaaattgcaa agtatttatt      3480
     cgattatagg aactccaaga atagtaccac tgataagtca cccgcagagt tagtgtttgg      3540
     gcgttcgttg cgctcacggc ttgatctatt gaaccctttc gcaccgtctt cgtcatcgac      3600
     gtccacagac ctaacacaaa ccgtcgcgcg taagcagtcc ttgcaggcta aacactaccg      3660
     aggtgtacaa agaccagact tcaaaaaaaa cgaccttgtc tggataacca aaaatactaa      3720
     caataacaaa gtcagttggc tcgagggcat agttaaggaa aaagtcggca atataatgta      3780
     cacggtatat gtgccgcagt tgaatgggga ggtcaccagg cacatggacc aaataagaag      3840
     aagacatcag tgtacattag taccaaagcc aaccggggaa gaccaagact gggactccga      3900
     cataattcca gatgtaacgt cgcctgctac cgaccacccc gagcctactt cacaaccagt      3960
     gagggaagga gaggcgacaa ctgtcgcaga accagcttcg gcgatgccgg ccgcaccggg      4020
     tacagacccc acgccgcccg gcacgccacc ggagacctcg ccgcgcagcc cccgcgccgt      4080
     ttcgcccctc aggcgaaggg caattagccc aatattctcg acaccttagt cgatgtagag      4140
     ttataaagtt tagtttattt agtagattaa gttataattt aagtagatag gtaaagagca      4200
     tattccctat ctaagagggg agaga                                            4225
//
ID   Gypsy-33_HeAr-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-170
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5610-5610 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 170 BP; 34 A; 42 C; 44 G; 50 T; 0 other;
     tgttaggttg gtaaacctgg cgccgaatgc gcgccgtgat gttggtacat cgtgcgcggg        60
     ctgcgtcccg cgcgttcccg cctttttaca aataaaatta gtgtgcaata gactagcgtg       120
     tttaattgac gtactgcgtt gttccctgtt tcccgcgcaa atacttaaca                  170
//
ID   Gypsy-33_LMi-I repbase;    DNA;    INV; 8895 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8895
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(382..1041,1045..1530,1509..1661,1609..3486,
FT                 3458..3874,3829..4347,4335..4670,4577..5776)
FT                 /product="Gypsy-33_LMi-I_1p"
FT                 /translation="MLQKLINQMGDNLVSKITDQQVLIRQELKEQLAQIEN
FT                 RTIKTACEVVDAKLKSVQEEVDKNSAAICVVNSYIRSQFEETNLSIKKVEE
FT                 SVELIGEKLQNEREKVQNSFKIVNSDLNKVVQKLEKIEKSNQNNLCSSNLV
FT                 CTNNAVANIGLWSNIPIKSFPSTDLHPVDFLQHCKDSFVEGMSEESKIKLV
FT                 KKXLVGEALSWANQNVEHWVNFQEFEISFFKKFWSESEQARIKSEFLNGPN
FT                 FMGKPGEMKEFCKNQIQKLIHLEQPFDIMTQIEALKRRLPEQLYWELVHAP
FT                 DHNLEQFLTYVDKLDRAVEREFSQYLRHGHDQSRGWQQNFYENQHRRRNYF
FT                 DGRRDNGNFGNENQNRYNRRDNGNFGNENQNKERQWEFWGETMGILVMKIR
FT                 IGMVGENLTIETEIKVKTMGLINTGGTDRKTETRSNEGPSIQGEPTGKLKL
FT                 APMRVRKLGARKDLRWTKFNNSKQNRENDVIESKAYKTXGERLVLDSNFWN
FT                 STLGTIENNKNKSIDTLNHDLLSQGVVSDFYKWANNTDTSENTTLGIETLF
FT                 PCENNYSNQGTCINTNSQYINPEASLNDNSNTELKHNLAHIELDNESFVNE
FT                 SNEVSDQTNSECQNDYKVIEVSNKNFNDSFQTEVDIFVDINNEEFNKLSKE
FT                 VLDRKHDDQYLVCIKDRTENDLTKVNSNKEMFLTNLWGKYSDDNKFSNFWK
FT                 RLEIVCDKVNPDWWKYKKVSKGRERYNGQGNLIVETQTQEGSDVVINSMQA
FT                 VSKSNNQGDSPQDFNFKEIEKDLLCEEDKDTKEENCIGCPYINVKIFGWQG
FT                 KCLIDTGSPISAITEKLRDKLKDMGGKQFVEMPVSGLKIRGATGKQSKYVK
FT                 SQVLLNFVIEGKEFDHGCLVVPDLSENFILGMDWILKCNVSFDWGGKKLII
FT                 MGVNDDYLLLSNIYILNCSDACNHIKNVEHIDIVHQEDDDFEQILEFKDLV
FT                 ELKVREADSLNNSQKEILSQLLWKYKEVFDKRPGQVKGYFCKLNLKPHDPF
FT                 FIKPYNIPLGKREAVSQEIQKMEKWGIIERSKSEYNNPLVVIMKKRGGCET
FT                 CTKKGGAVRLVLDSRHLNKFLLRENDHPENMDELLYKFEEIKFMSSLDLTS
FT                 GFHQIPLEYESRKYTAFLYCGKSYQYCVVPFGLNVSVAEFIRALDKVLGHD
FT                 LYTKLIVYVDDILVTGKTWEEHCKLLEEIFFKLKKGGMTTFGRNILQVKER
FT                 GYDLKLEKCKFGVKELKFLGHIINEKGILPDQDKIEAIKDFPVPKNKKQLK
FT                 SFYGLAGFYRKYLNSQALNAPCLNNLLKKNTIWDWNQDCQNAFQYIKDQLC
FT                 QSKILYRPDMSLPFCVMTDSSEVGLGAHLFQEVVSNGKLEHRSIAFASRVL
FT                 QKHEKYTQEVYTVTEKELLAIHWAFTKFRNYLLGHKVIVYSDHKALSYLHE
FT                 CKLYHSRITRWAMFLQQFNYEIRYIKGEKNVIADALSRLPVGVMLKILVLI
FT                 VGNSKLCFLGGLKRNLKFITSGGDAENSGFDSREFKIMFLRGIKEESEILK
FT                 ICNDIRRFQNHDQNWKLVKSYLGKKGHEKVDEYYKVHKGVLFRRMRPDFDD
FT                 WKLCWPEQCIDTLIKYIHESFAHCGITKCIQKIQENIYFYNIGKKVKEIIS
FT                 RCDRCQRVKVSNQTCRGQMQNILPNKKLDLIAIDIYGALPETRGGFSYILV
FT                 VLDVFSKFIKLYPLKKATSKQIISKFINNYFNVVGQPQAILSDNGTQFTSN
FT                 SWKRFVSDENIKHILISVYHPASNPAERYMRELGRLFRTYCNKNHASWIDY
FT                 LKDFEEVMNSLQHSSTGFSPFEIMFDRKPDSLISQHIEFPICKPITSQERE
FT                 EIVRQTMKKQGDLRKKRHDAKGKFTKFSPGNLVLVKTQEKSKLLTAELKFF
FT                 LIYTLVPLKF"
XX
SQ   Sequence 8895 BP; 3167 A; 1163 C; 1632 G; 2929 T; 4 other;
     catatggtgc atcggcacag aaaaatgctg ttgattttcg gaaacctaca aatgtgacct        60
     gtttcagaaa cataacaaga cgtatatgga agaagaaacc acatgtatat gttttatcta       120
     atcaagactg ttatgaaagt gactggactg gaactcaaaa tgaaatgaag aaaggtggat       180
     taagcaagaa gtgtgatgaa caaaaaaggt ttaatctggg aaaggactgg acgccaacaa       240
     ctgtaagtgt tttataaagt tttcttatcg tattcttttt gtgactgaag taacgtgctt       300
     gtgcaatatg agtttaggta atcaggaaaa aatggggggg gagaaggaat tgagactaaa       360
     cccgaaaagg aaacattaga catgcttcag aaactaataa atcaaatggg ggataactta       420
     gttagtaaga tcacagacca acaagttttg attaggcaag aattaaaaga acaattagct       480
     caaatagaaa atagaactat caaaacagcc tgtgaagtcg ttgatgcaaa gttaaaaagt       540
     gttcaagaag aagtagacaa aaatagtgct gcgatttgtg tagtaaatag ttacatcaga       600
     tctcaatttg aagaaacaaa cttatcaatt aagaaagtgg aagaaagtgt agagttaatt       660
     ggggaaaaat tacaaaatga aagggaaaag gttcaaaatt catttaaaat tgtcaattcg       720
     gacctcaaca aggtagtaca aaagttagaa aaaatagaaa aatcaaatca gaataatttg       780
     tgttcaagta atttggtatg tactaataat gctgtagcaa acattggctt atggtctaac       840
     attccaatta agagttttcc aagtactgat ttgcatcctg tagacttcct tcaacactgc       900
     aaagacagtt ttgttgaagg aatgtctgag gaatctaaaa taaaattagt taaaaaawtt       960
     ttggttggag aggcattgtc atgggcaaat caaaatgtag agcattgggt gaattttcaa      1020
     gaatttgaaa taagtttttt ttaaaaaaag ttctggtcag agagtgaaca ggccagaatt      1080
     aaaagtgaat ttttgaatgg accaaatttt atgggaaaac caggggaaat gaaagaattt      1140
     tgtaaaaacc agatacagaa attaatacat ttggagcaac cttttgatat aatgacacaa      1200
     attgaagcat taaaaagaag attacctgaa caattatact gggaactagt acatgcacca      1260
     gatcacaatt tagagcaatt tttaacatat gtggacaagt tggatagagc agtggaaaga      1320
     gaatttagtc agtacctgag gcatggtcat gatcagagta gggggtggca gcaaaatttt      1380
     tatgaaaacc aacataggag aaggaattat tttgatggta gaagagacaa tgggaatttt      1440
     ggtaatgaaa atcagaatag gtacaatagg agagacaatg ggaattttgg taatgaaaat      1500
     cagaataagg agagacaatg ggaattttgg taatgaaaat cagaataggt atggtaggag      1560
     agaatttgac aatagaaaca gaaatcaagg tgaaaacaat gggtctaatc aatacagggg      1620
     gaaccgaccg gaaaactgaa actcgctcca atgagggtcc gtaaattagg ggcgagaaaa      1680
     gatttaagat ggaccaaatt taacaatagt aaacaaaata gggagaatga tgtgatagaa      1740
     tccaaagctt acaaaacaca wggggaaaga ctagttttag attcaaactt ctggaattca      1800
     actttaggca ccattgaaaa caacaaaaat aaatctatag atactttgaa tcatgatctg      1860
     ttatctcagg gggtagtaag tgacttttat aaatgggcaa acaacacaga cacatctgaa      1920
     aacacaactt taggcataga gacattattt ccatgtgaga ataattatag caatcaaggt      1980
     acatgtatca acactaacag tcaatacata aatcctgaag cctcattaaa tgacaatagt      2040
     aatacagaac ttaaacacaa tctagcacat attgaacttg acaatgaatc ctttgttaat      2100
     gaaagtaatg aagtttctga tcaaactaac tctgaatgtc aaaatgatta caaagtaata      2160
     gaggtaagta ataagaattt taatgattca tttcaaactg aagttgacat ttttgtagat      2220
     ataaataatg aagaatttaa caaactgagt aaggaagtat tggataggaa acatgatgat      2280
     caatatttag tgtgtatcaa agataggact gaaaatgatt tgactaaagt gaacagtaat      2340
     aaagaaatgt ttcttacaaa tttgtggggt aagtacagtg atgataacaa attcagtaac      2400
     ttttggaaaa gacttgaaat agtttgtgac aaagtaaatc cagattggtg gaaatacaaa      2460
     aaagtaagta aaggtaggga aagatacaat ggccaaggta atctgattgt tgagactcag      2520
     actcaggaag gttctgatgt tgttattaat tctatgcaag ctgtaagtaa aagtaataac      2580
     caaggagata gtccacaaga ttttaacttt aaagaaattg aaaaagattt attatgtgag      2640
     gaagataaag atactaaaga agaaaattgc attgggtgtc cttatataaa tgtcaaaatt      2700
     tttggatggc aaggtaagtg tttgattgat actggaagtc caatctcggc tattactgaa      2760
     aaattgaggg ataaattgaa agatatgggg ggtaaacaat ttgttgaaat gcctgttagt      2820
     ggattaaaaa ttaggggtgc aactggtaaa caaagtaaat atgtcaaaag tcaagtgtta      2880
     ttaaattttg taattgaagg aaaagaattt gatcatgggt gtttagtggt tccagattta      2940
     agtgaaaact ttattcttgg tatggattgg attcttaagt gcaatgtgag ttttgactgg      3000
     ggtggtaaaa aattaattat tatgggagtt aatgatgatt acttactttt gtcaaacatt      3060
     tatatactta actgtagtga tgcatgcaac catattaaga atgtagagca tatagacatt      3120
     gtacatcagg aggatgatga ctttgagcaa attcttgaat ttaaagactt agttgaactt      3180
     aaagttaggg aagctgatag tcttaataat tcacaaaaag aaattttgag tcaactatta      3240
     tggaaatata aagaagtttt tgacaaacgt cccggtcagg taaaagggta tttttgtaaa      3300
     ctgaacttaa aacctcatga tccgttcttt atcaaaccat ataatatacc tttggggaag      3360
     agggaagctg taagtcagga aattcaaaag atggaaaaat ggggaattat tgagagaagt      3420
     aaaagtgaat acaataatcc attagttgtc attatgaaaa aaaggggggg ctgtgagact      3480
     tgtacttgat tctagacacc taaacaaatt tttgttgaga gaaaatgatc atcctgaaaa      3540
     tatggatgaa cttttgtata aatttgaaga gattaaattc atgtcaagtt tagatctaac      3600
     atctggcttt catcaaattc ctttggaata tgaatccaga aaatatactg cttttttgta      3660
     ctgtggaaag tcttaccaat attgtgtagt accctttggt cttaatgttt ctgtggctga      3720
     atttattaga gctctggata aagtgttggg acatgatttg tatacaaaat tgattgtgta      3780
     tgttgatgac attcttgtaa ctgggaaaac ttgggaagaa cattgtaaac ttttggaaga      3840
     aatattcttc aagttaaaga aagggggtat gacttgaaat tggaaaaatg caaatttggg      3900
     gttaaagagt tgaagttttt gggtcacatt atcaatgaaa aggggatttt acctgatcaa      3960
     gacaaaatcg aagccataaa ggattttcct gttccaaaaa ataagaaaca actgaaatct      4020
     ttctatggac ttgcaggatt ttacaggaaa tatttaaata gtcaagcatt aaatgcacct      4080
     tgccttaaca atctgctaaa aaagaatacc atttgggact ggaatcagga ttgtcaaaat      4140
     gccttccaat acatcaaaga tcaactatgt caaagtaaaa ttttatatag accagacatg      4200
     tctttacctt tttgtgtcat gacagacagt agcgaagttg gtttaggagc acatttattt      4260
     caggaagttg tatctaatgg aaaacttgaa cacagatcga ttgcatttgc cagtagagta      4320
     cttcagaaac atgagaagta tacacagtaa ctgaaaagga acttttggct attcattggg      4380
     catttacaaa atttagaaac tatctcttgg gacataaagt aattgtttat tctgatcaca      4440
     aggcattaag ttatttacat gagtgcaaac tttatcacag cagaattact agatgggcca      4500
     tgtttttaca acaatttaat tatgaaatca ggtacataaa aggggagaaa aatgtaattg      4560
     cagacgcact tagtagatta ccagtggggg tgatgctgaa aattctggtt ttgatagtag      4620
     ggaattcaaa attatgtttc ttagggggat taaagaggaa tctgaaattt taaaaatttg      4680
     caatgacatt cgaagatttc aaaatcatga tcaaaattgg aaactagtga aaagttattt      4740
     agggaaaaag ggtcatgaaa aggttgatga atactataag gttcacaaag gggtattatt      4800
     taggagaatg agacctgatt ttgatgactg gaaattatgt tggcctgaac aatgtattga      4860
     cacactaatt aaatatattc atgaaagctt tgcacattgt ggcatcacta aatgtatcca      4920
     gaaaattcaa gaaaacattt atttctacaa tattggtaag aaggtaaagg aaattatatc      4980
     cagatgtgac agatgccaaa gagtaaaggt aagtaatcaa acttgtagag gacaaatgca      5040
     aaacatcctg cccaacaaga aactggactt gattgctatt gacatttatg gtgctttacc      5100
     tgaaacacga ggaggattta gttacattct ggtggtcctt gatgtctttt ctaagtttat      5160
     aaaattatac ccactgaaaa aggctactag taaacaaatc atttcaaaat ttataaacaa      5220
     ttatttcaat gttgttggtc aacctcaggc aatcttatct gataatggta ctcagtttac      5280
     ttcaaactca tggaaaaggt ttgttagtga cgaaaatatt aaacatatat taatttctgt      5340
     ttaccatcca gcaagcaatc ctgcagaaag gtatatgaga gaacttggga gattgttcag      5400
     gacttactgt aataaaaatc atgctagctg gattgactat cttaaagact ttgaagaagt      5460
     catgaacagt cttcaacact cttcaacagg attttcacca tttgagatta tgtttgatag      5520
     aaaacctgat agccttattt ctcaacacat tgaattccca atttgtaaac ctataacttc      5580
     acaagaaagg gaggaaatag ttaggcaaac tatgaagaaa caaggggact tacgaaaaaa      5640
     gagacatgat gcaaaaggta aatttactaa gtttagtcca ggaaatttgg ttctcgttaa      5700
     gacacaggaa aaatctaaac ttttaactgc agaacttaaa ttttttttga tatatacatt      5760
     ggtccctttg aagttttaga aagcccacac ccaaatgcat acagattgat ttacccaaaa      5820
     tctaggaaat tgtttggttt aagaaatata actgaattaa aaccttataa atctgccagt      5880
     taatagattt tttggtctaa aaatactttg tagaattgac ttatggtaca atctttgttt      5940
     cttttgatca tatttgtttt taggtaggag gtccattgtt ctgtaatgga cacaccacat      6000
     ggcgagtggt gccttctcct agctgggtga tctaatactt cctttcttag atcattcact      6060
     cttttactat cctatcttta ggtaaatttt gttttgtttt cattcattca aaattatatt      6120
     ctttaattta ttactcctca tactttctac tcatattgat ggtaaattaa ataattgtag      6180
     tacttttgct ttgtaaaatt ctataggatt gagaccataa gctaatttga agtattttaa      6240
     aactgaacat atgttctgaa agtaatatac agattttatt tagaaaaata tgtgtggaca      6300
     aaggatgtaa aaaaattctt atttctgatt caaattcata gtagcatatt catttttaga      6360
     agtggaacac acaactacaa tcctattcct ggtcaatttc aaatatattc ataccataac      6420
     aatagtcatc acatatctga ttgtgacagt acacctagaa aatagtcttg ttaattcaac      6480
     catttgctga taaatttgtt taaacttgtt aaactttaaa aatgattgca tgtttctctt      6540
     tagtttacat tcatttcgtt tggagctgta ttcatgtcat tattttgata acttaattta      6600
     tccttaaatg tgatataaag aaaaatctgg caatatcaac agaagtaatt tgttataaca      6660
     tgaaaatttg taatttgaca atatgagaca attctataga catatagatc caatacttac      6720
     tgacttatga gattatttat ttggttacat ttcttgttgt attcatttac agagaaaatt      6780
     gtattcaatt ttttagttgc caatttacaa tgtggttaat tttgtatcaa aaataatagt      6840
     cttctgtaca cttaatgtaa catttwaatt taacctcata tgtttatgcc atttccaagt      6900
     cagtgatcaa tacctaacag ttactgtgtt ctataacacc aattacttat gatatttatt      6960
     catgaaaatg gttagttcaa aattcttttg tcatatattc ctaaattcat gttccattct      7020
     gtaagactac tgaccacctc tggcttccta tataatctct cattgaactg cagtaacttc      7080
     tgtatacgtg cttcaggtgc tactcttgta tgttctgcca gagcacgcat gagatgcaaa      7140
     tctatattca cactttaaat tattttcatt attaattctt tttttggaaa taatttcatt      7200
     caaagtaatg tttattttaa tgagttacaa attttgttga aaattttctt tagttaatga      7260
     ttagtatgta tatgttttca ttaacccaat ctttatattt tatactggtc tgatactgtg      7320
     tacgttttat ttttgttgcc ataggctagt acagtattca ttgcaatagt ctttttatat      7380
     atatcaatta tgtattacta atacctttct atatgatatg tattagtatt catggtgtac      7440
     ttgtcactta acaaaattga tgtaatgtca gatatattaa gatacctttg cacaccagac      7500
     ttgtcaataa acattatgta ccggacatga ctatgtacct tgtattctgt gttagggaaa      7560
     tattttgacc ttgacggctg gggtcttttt gggggtagtt tacaaagtta ttggggtgag      7620
     attgttaata tacaatgaat tcatataatt atatgaaata atctttattc atgagaaaat      7680
     gaatttaata attatcataa tttaaactca ctggtaaact caacagtcgt ctttatggtg      7740
     gcgtcatgcc catctgctga cctgtagctg tgcaggctgt ggatgtaaaa tttacagcag      7800
     caattttttt ttttgcaaat ttttaggtgc ttgtgtgcgg ttcgcacaag tgccgaacaa      7860
     atatgaataa attttttata aagaacaaaa cttgtgacat taatttatgt ctgtatggtc      7920
     atatacatat gttagcctgt aactgtgcag gttgtggatg taaaaaaaat ctatagtagc      7980
     atattttgtt taaatatttt agatatttct gggtggttcg tacaagtgcc gaactggtag      8040
     ggttcctgtt catataactt ctggtcgcac ttgatgtatt atgtcataat ctagctttgc      8100
     tcttttattt gccattaaga catattccaa ttattttgct ttcaatgttc tcatagtaat      8160
     aatcctcaca taattatcag gatcaatgtt tttatgactg tttgataagc aagacatgat      8220
     gaagtactca tatctttatg caatttgaaa atcgttaatt attttgcatt gtcaatttat      8280
     ttcagtatta aaattgtaat aactgcttaa gagttcactc aatgtacact tgcaacaaaa      8340
     gttgttctag taatcatttt tatactgtct tkatgaaact tgatgttttc tcattttttg      8400
     aaatttatgt actgttcaca caaatgagtg tgcacttatt aacatgcaac ttcattaagc      8460
     ttatctgtat aacttcagac tgtacccgtg ctatgtaaat ttggttcagc acaactttgt      8520
     ctgtgtgttc atgcttgttc cataaaacaa tttattgttc ttctgtgtct aatgtcatgg      8580
     cagttaattt taaagaaaag aattgtgcat ttcagtaatc atatcatcat cagtagtaaa      8640
     atattatttt ggtaacagtt tttgataaaa tcagtcattt tatattacta tagcatgatt      8700
     taatattgaa tttgagtaat atagtataaa ttttgtatat aaaaaattgt gtgctcttgt      8760
     tcatcctaaa aactgatcat aattttgtct tgtgtgatat aaatttaaaa tctttgctga      8820
     ttgtaaatac tccccaattc tgttgtcaca caatgtcatc cacatgtgat gtctgacatt      8880
     gtgtgagggg ggtat                                                       8895
//
ID   Gypsy-33_LMi-LTR repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-693
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 693 BP; 215 A; 105 C; 131 G; 242 T; 0 other;
     tgtaatgtat ttagccagga gggtcccgtt tgtttgaata agaagtattc gataccacat        60
     ttggtcgtag tattgtaacc taatattcca tgtttatatt acataagcat tttatggcac       120
     ttctgcaagt cacatttgca gtcattatta aataatgtaa acatatatta acactgcact       180
     aattgttgtt tacttacgat cttttctatt gttttgtttt gatatgaaaa acttttatta       240
     catttgtcat aattttgtgt atctccacgt aaagcaaaat atgtgtatgt ttcatgaaca       300
     aattgttaaa tatttaaatt tgtacttccg tgttctagaa ggttctagaa atgctattat       360
     gtattaatac gcgcgaattg gcgcgaactc agtcagtggg ggagtcttag gcagtcttag       420
     aggagtaaca tcttagtatg gaagtgtgtt gtgaaccagt cttactcttg catcactttt       480
     gtgctttttc aggaatggat aaataaatat acctaaaaaa tgaaagtgtc acatttgtgg       540
     tttcctgaaa acccaagaac ccgacatcat aacataattt tgtgatgtgt taatggcagg       600
     cgagctacga gatcttcgag accactgaac atccgaaaca ggtgatgtat agaaaaatgt       660
     ggctttagtt tatgtcagta aaaaaaagcg cca                                    693
//
ID   Gypsy-33_MoPha-I repbase;    DNA;    INV; 4722 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4722
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1111-1111 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..1033
FT                 /product="Gypsy-33_MoPha-I_1p"
FT                 /note="SAP domain, gag, and zinc finger."
FT                 /translation="MPKQWIYNASKDELKDILAKTGLETHGTLDDLRRRLS
FT                 QFVTLHPERFTNMSVPPGPSSDVPHVTVIPPEEDPPAESQAKAMNQIRKWG
FT                 CHFEGKDPMSFLERVEELKTEYGYSDQQLLRGLPELLKGEALLWFRNNRQN
FT                 WERWDEFITEFREYYLPRRYLTQLRREIQARMQKPGEKYRKYATEILTMMR
FT                 RAGGYTVVDQLDILYENMEPRYKLYVRRDGIVRVNELLRHAEDFEVLDEQC
FT                 RSRQATPRSPVTAATTYDKTECCWRCKQRGHTRFDCRRIPKKFCSQCGRDG
FT                 VFTRDCHPPPGNAARAEESATAPRPSE"
FT   CDS           904..4065
FT                 /product="Gypsy-33_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LPPYTEKILLAMRQGWRLYEGLPPPAGKRRQGRGKRD
FT                 RAPSLRIVYKPRPHLPIRIRGRAFLALLDTGSEASFVSSHTAAQLRNTGLT
FT                 AKTAAGRVHLADGSSTEIVGYMTLPIAVNGRVILHDLQIMPGLDAEVLIGV
FT                 DLWARLRQAIPPPPIRRAAAVSPKLLSASNCRDLTPTEEGQLREFLDTELP
FT                 LFEDVHGPTDRVQHTIRVKDHPPIKQRYRPRNPAMQSIIDAEVEEMLREGV
FT                 IEPSRSPWSSPIVIVRKKDGKPRFCVDFRRVNEVTEADAYPLPQISATLDK
FT                 LRGARYLTTIDLKNGYWQVPLDPASRPITAFTVPGKGLLQFRVMPFGLHSA
FT                 PATFQRLLDAVLGPELEPHVFVYLDDIIIVNDSFAEHLQTLHEVFRRLREA
FT                 RLRLNPAKCKFGVNRLTYLGHVVDRDGIRTDPEKTDAITRWEPPKTVRQVR
FT                 QFLGIASWYRRFIKDFATIAAPLTALTRKKASWQWGTEQDTAFNELKRTLT
FT                 TAPILACPDFTRQFVLQTDASASGLGAVLTQNFPEGERVIAYASRTLNAAE
FT                 RNYSATELECLAVVWGIRRMRCYLEGYHFKVVTDHQSLRWLRTLDSPAGRL
FT                 GRWAFELQQFSFEVQYRKGSLNRVADALSRQTTVSAIVLPKCPWYRRMWQT
FT                 VKQTPQDAPDFRIEGGRLRRHVLHTLDFRDTPPETQWKECVPAGKREELLH
FT                 RYHDQPTAGHLGIAKTITRIAEFYYWPGMFGEIARYVRRCPECLAHKPAQV
FT                 RPAGFLHPTAVTRPWQQVAIDLVGPLPRTTRGHTWILTMQDRFTKWLEART
FT                 LRRATAKNVVEKLTGAVILQHGCPEEILSDNGTQLRSSQLKDLLAGNGIRH
FT                 RLTPAYAPHCNPVERTNRVLKTMISQYVRRNHRAWDEHIGELQFAYNTAKH
FT                 DATGYTPAYLMYGRELRRPTEPPTETERPRPHALQKRLRETHEFVRIQNAR
FT                 AFQRQEKYYNLRRRNWQPKLGEWVWKRDHPLSKRAEAFNAKLAPKFIGPLE
FT                 VRRIISPVIVDLRSKGGKWYRHTHVQDLKATDSHPHSSGGDENTDDER"
FT   CDS           4169..4678
FT                 /product="Gypsy-33_MoPha-I_3p"
FT                 /translation="MAHDEILEAINAYLNDDEEYDPTQPGFERPAVAPEQP
FT                 TTTARPAARVALVGHRNGRLIQPSDRRNQTKNAWMLQPPPTRPPRPKLATP
FT                 QPAATGEQRPTLEPIRVYGPAPPPPIPVEVEPGTVVDVPHFSVHVSRQYKA
FT                 RLGNRRWHLRFDSCGRLRSCKEKSYPPTERQ"
XX
SQ   Sequence 4722 BP; 1213 A; 1468 C; 1258 G; 783 T; 0 other;
     atttggcgcc cgaacaggga ccgatagaaa cgtaccggga agcagcgaaa ccgtcgtact        60
     acgctcctgc cactcgatgc cgaagcagtg gatatataac gcgtccaaag acgaattaaa       120
     agatatactc gcgaaaaccg gcctggaaac acacggaacg ttagatgacc tacgacgccg       180
     attaagccaa ttcgtgacac tccaccccga gagattcacc aatatgtccg tccccccggg       240
     accatcttcg gacgtaccgc acgtcacggt aattcccccc gaagaagacc cccccgcgga       300
     atcacaggca aaagccatga atcaaattcg aaaatgggga tgccacttcg agggcaagga       360
     cccgatgtca ttcctagagc gagtagaaga gttaaaaaca gagtacgggt acagcgacca       420
     gcaactgcta cgagggctcc ccgaattatt gaaaggggag gccctcctgt ggttccgaaa       480
     taaccgccaa aactgggaaa ggtgggatga atttataact gaattccgcg aatattattt       540
     gccacgccgc tacctcacgc agctccgtcg cgaaatccag gcgcgaatgc aaaaacccgg       600
     ggagaaatac cgtaaatacg ccactgaaat attaacaatg atgcgacgcg cgggggggta       660
     tacggtcgtc gaccagctgg acatattgta cgagaatatg gagccacggt ataagctata       720
     cgtgcgccgc gacggtatcg tccgcgtaaa tgaattatta cggcacgcgg aagacttcga       780
     ggtactagac gagcaatgcc gatcgcggca agcgacaccg cggagccccg tgaccgccgc       840
     caccacatac gacaaaaccg agtgctgctg gcgctgcaag cagcgggggc acactcggtt       900
     tgattgccgc cgtataccga aaaaattctg ctcgcaatgc ggcagggatg gcgtctttac       960
     gagggattgc caccccccgc cgggaaacgc cgccagggcc gaggaaagcg cgaccgcgcc      1020
     ccgtccctcc gaatagtcta taaaccgcgg ccgcacctac cgattcgaat acgcggtcgg      1080
     gcttttctcg cgttactgga caccggatct gaggcatcgt tcgtgagctc ccataccgcc      1140
     gcgcaactac gaaacaccgg gctgacagcg aaaaccgccg ccggtcgagt acacctggcg      1200
     gacgggtcga gcaccgagat tgtcgggtac atgaccctac cgatcgcagt aaacggtcga      1260
     gtgatcctgc acgacctcca gattatgcct ggactcgacg ccgaagttct aatcggcgtc      1320
     gacctctggg cccgcctgcg ccaggcgatt cctccgccac cgatacggcg cgccgccgcg      1380
     gtctcaccga agcttctctc cgcgtctaat tgccgcgacc ttacgcctac cgaagaaggg      1440
     cagctgcggg agtttttgga taccgaactg ccattgttcg aggacgtaca cggacctacc      1500
     gaccgcgttc agcatacgat acgcgtaaaa gatcatccgc caataaaaca acggtaccga      1560
     ccacgcaacc cggctatgca atcgatcatc gacgccgaag tagaagaaat gctacgggaa      1620
     ggagttatag agccctcgcg tagcccctgg agctcgccta tcgtcatcgt gcgaaagaag      1680
     gacggaaagc cgcggttctg cgtggacttc cgccgagtga acgaagtaac cgaagccgac      1740
     gcgtacccgc taccacagat ttccgcgaca ctggacaaat tgcgcggggc gcgataccta      1800
     acaacgatag acctaaaaaa cgggtactgg caggtgccgc tcgatcccgc cagtcggccg      1860
     atcactgcat ttaccgtgcc gggaaaggga ctcttacaat tccgggtaat gccgttcggg      1920
     ctacactccg ctcccgcgac atttcagcgc ttgctggacg cggttctggg gcccgaactc      1980
     gagccgcacg tatttgtata cctggacgat attataatcg tcaacgactc atttgctgaa      2040
     cacctacaga cgctgcacga ggtattccgg cgactgcgcg aggcccgcct ccgactaaac      2100
     cccgcgaaat gcaagtttgg cgtaaatcga ctgacgtacc tcggacacgt ggttgaccgc      2160
     gacgggatac gaaccgatcc cgagaagacc gacgcgatca ctcgatggga acctccgaaa      2220
     accgtccggc aagtacggca atttctcgga atcgcctcgt ggtaccggcg cttcatcaaa      2280
     gacttcgcca cgatcgccgc cccgttaacc gcattgacac gtaaaaaggc atcgtggcaa      2340
     tggggaaccg aacaagatac cgcctttaac gaattaaaac gcacgttgac caccgcgccg      2400
     atattagcct gtcccgattt tacccgtcag ttcgtattgc aaacggatgc gagcgcgtcg      2460
     ggtttgggcg cggtcctcac gcagaacttt cccgagggag aacgggtgat cgcatacgcc      2520
     agccggaccc tcaacgcggc tgaacgtaat tatagtgcca ccgagctcga gtgcctcgcg      2580
     gtcgtatggg gcataagacg catgcgctgc tacctcgaag gataccactt caaggtcgtt      2640
     acagaccacc agtcactacg ctggctgagg acgctcgact caccggctgg gcgactcggc      2700
     cgatgggctt tcgagctcca gcaattcagc ttcgaggtac agtatcgtaa gggatcccta      2760
     aaccgagtag ccgacgcgct ctcccgccag accaccgtaa gcgccatcgt cctcccaaaa      2820
     tgtccgtggt accggcgcat gtggcaaaca gtcaagcaaa caccccaaga tgcacccgac      2880
     ttccggatcg aagggggccg gcttcggagg catgtcctgc acacgctaga cttccgagac      2940
     acgcccccgg agacgcagtg gaaagagtgc gtaccggccg ggaaacgcga ggaactcctg      3000
     caccgatacc acgaccagcc gaccgcgggg cacctcggca tcgcgaaaac tattacccgt      3060
     atcgcggagt tttactattg gcccggcatg ttcggcgaga tcgcgcgtta cgtacgtcgg      3120
     tgccccgagt gcctcgcgca caaacctgcc caggtacgac ccgcaggttt cctgcacccc      3180
     accgccgtca ccaggccatg gcaacaagta gccatagacc tggtcggacc cttgccacgt      3240
     actacgaggg gacatacgtg gatcctaaca atgcaggatc gatttacaaa atggttagaa      3300
     gctcgcacac tgcgacgcgc gaccgcgaaa aacgtagtag aaaaacttac gggggcagtc      3360
     atattacaac acgggtgtcc ggaagaaata ctgtcggaca acggcaccca gctgcggtca      3420
     tcccaactca aagacctact tgccggaaac ggcatccgtc accgccttac gccggcctat      3480
     gcgccccact gcaatcccgt cgagagaacc aaccgggtcc tgaaaacaat gatctcacag      3540
     tacgtccggc gaaatcaccg cgcttgggac gagcatattg gtgaactcca attcgcatac      3600
     aataccgcaa agcatgacgc caccgggtat acaccggcgt atctcatgta cgggcgcgag      3660
     cttaggcggc cgaccgagcc ccccaccgaa accgaacggc cacgtcctca cgcgctgcag      3720
     aaacgactcc gagaaacaca cgaattcgta cgcatacaga acgcgcgtgc ctttcagcgg      3780
     caggaaaaat attataactt gcgccgccgc aattggcaac caaaactagg ggaatgggta      3840
     tggaagcgcg accaccccct ctcaaagcgc gccgaggcct tcaatgcgaa attagcccca      3900
     aaatttatcg gacccttaga ggtccgccgc attatctcac ccgtaattgt cgacctacgc      3960
     agtaaagggg gaaaatggta tcgacacaca cacgtacagg acctgaaggc caccgattcc      4020
     catccgcact ccagcggtgg agatgaaaac acggacgacg aacgttaaag aatccaccaa      4080
     aacacaacaa acgggcctca ggaggggagg gcaattgtga ggcaccagcc agaaattcga      4140
     aaatctctgc ctcactcgcg ttccgaccat ggcgcacgac gagatcttgg aagccatcaa      4200
     cgcctatctc aacgatgacg aggaatacga cccaacacag ccgggcttcg agcgaccagc      4260
     tgtcgctccc gagcagccaa caacaacggc acgaccagcg gccagagtag cccttgtcgg      4320
     acatcggaac ggacggctca ttcagccctc cgaccggcgg aaccagacca agaacgcctg      4380
     gatgctccag ccaccgccca ccaggccacc acgaccaaaa ctggccacac cgcagccagc      4440
     agcaaccgga gaacaacggc cgaccctgga gcccatccga gtttacggac cggcaccgcc      4500
     accgccgata cccgtagagg tagagcccgg gaccgtcgtg gacgttcctc acttctcggt      4560
     gcacgtgagc cggcaataca aggcccggct aggcaatcga cgatggcact tgcgcttcga      4620
     cagctgcgga cgactgcggt cctgcaaaga aaaatcttac cccccaactg agaggcagta      4680
     aaaagcacct caaattcagg tgctatcttg agagaggggt gg                         4722
//
ID   Gypsy-33_MoPha-LTR repbase;    DNA;    INV; 887 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-887
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1197-1197 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 887 BP; 212 A; 288 C; 220 G; 167 T; 0 other;
     tgtaacaaac cgcctttttt ttcggtgacc aacgaccgcg gccggtctga ccgactaccc        60
     gccagaccgc gatatgggca tcggcccaat aataaatctt aagagtaggc gaccgagaca       120
     acgaccgtct cgacgatctc gatcctcccg ccagcatccc gctcggcgaa aggtggagga       180
     cggagaagcc cgaagacccc cgagggtcca cgaacctccg ccgagagcgg tataaaagat       240
     cgcctcgacg gaggaacagt cacttctcgt ttatccggtg cccgagcttt tcccgatccg       300
     ctcggacacc acgagaagag cgaacgcaga ttagggtaga gcgtgctccg ccttagccga       360
     gagttctcgg ctacgttcgc gaagaagaaa acacgtccta gactccgaac cagcaaagtc       420
     gagggtggag tgttctccgc cttcgccaag ggttcttggc cgccggttcc atcctctcct       480
     gacacggtat ataacaaacg gggtagagtg ttctccgcct cgcccgagtc ttctcgggat       540
     accgtgacca attcggcaaa accctacccg ttttccgaga aacgcaatca cgcgcgccgc       600
     gcaccacaac ggcccgaaaa cgatcacgcg ctcacctcga gaccccgccg ccaccgcgtc       660
     tcgtcaagct cgcccgaccg cacagctgac gccgcgagca cgcgcgcacc gccgcaagga       720
     atatcccgcc gcggtacact gtaaataatt gtaaatagat gtacagatac ctttcgacac       780
     aaaatatact taattattat tagaacgtac gcttttcgct gtttctgcgg cctttcctgc       840
     cctagttccc gataaacttg cccgcgcagg gaaacacggc tgttaca                     887
//
ID   Gypsy-33_MSe-I repbase;    DNA;    INV; 4557 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4557
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 910-910 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4557 BP; 1203 A; 1158 C; 1208 G; 988 T; 0 other;
     gtgacgccca acgagcgggc aataccatta tacgtaattc gggcaagtcc attatttcga        60
     tcgcgatttt tcgagttacg acgctgtgac ggcgattctg tcctgtagaa gtagcttatc       120
     caggacctag aaaacgcttc ccttgtacca gcgctgcgga aaaacctagt gcgacggaat       180
     agtcaaaaat acggcacacc ggtcgcctca cggaactccg ccattttata gactcgcaag       240
     cacggtcaag tgacctaaca aataatgcca ccgaaacgac atggcaaccg ggacaaccct       300
     ccaacatccg atacggacga cgagcggccg accagctcac cagtcataac aatgaccgaa       360
     gacgcgctgc agtcgctagt cgctaacatc gcgcgcagcc agatcgaggc gaatcagctg       420
     cttatggaga agatctttgc caaaggccag tcccaggatt ccccaactcc accacccgat       480
     gcatgcgcga cattaacgca cggaaatttc gcgaaatgta cgacgcgctt cgatggaacg       540
     accaagaacg cggacgctgt cgaagcgttt atcgacgccg tacaagtata caaagaatgt       600
     acaaacgtga acaacgacca cgcgttgaaa ggattcccga tgctgctgac cggcgaggcc       660
     gccgtttggt ggcagggcgt caaagcgtcg gtgacgtcgt gggaggatgc cctgcgacga       720
     cttcgcggca tgtttggagt gccgcgcccc gcgcacaaaa tattccggga cattttcgcc       780
     accgaacaac aacccagtga acgtgcggat gtgttcgtat ctaaagtgcg cgctctaatt       840
     gctaagcttc cgtattctgt gcccgaaaat atgtgtgttg atattatcta tggactttta       900
     aatcgtaagt taaggaaacg agtgttacgg gacgcggtgg acagcgttga agtattgctg       960
     gaaaaggcca ggttagtgga agaagccttg gcggaggtaa gcgacccttc cattactcca      1020
     atccctccct cgcgatgtac ctgctagcaa aacaaagcgg ccgcgacccc gttgtaatta      1080
     ctgtaaaata tttggtcacg acaccgccga gtgtcgtaat aaatcgcgta atttaagtaa      1140
     gcccgatgaa catcccgcgg ctaaaccgtc aacatccgac attcgttgct acggctgtgg      1200
     tcagttggga gtggtacgct ccaagtgcga tacatgtaag ggtactagca aaatgaattt      1260
     ccaaagtgca caggtagata acgtagagta cgcgcgaccg acagttatga tccaagtagt      1320
     aggacaaaat ggtgccgcta ttttggacac cggctctacg cactcgatcg caggccccat      1380
     gctgcatcag ctgctggtgc gcgccggagt cgagttcatt gagacccatc gcactgtagg      1440
     gttagccgac ggatcgcaac aagtgcgcgc ggcgctaacg tgtgataccg ttgtaacgtt      1500
     aggaagacgg agggtactta cgagttttat agtgttcccc ggcgccgaca cgaggacgtt      1560
     gctcggcaga gacttcatca tgcaggctaa agttgtacta gacttacctc agggcagctg      1620
     gtattattcc gacgccccgc acgagacaca ccagtttatg acgtcatacg acttaccttc      1680
     aggcaaggaa acagagctga tgggcgtcga tacctcgaag ttcacgctgc gtgatgacga      1740
     aggaacaaat ttgacaaccg accagaaatg tcagttgaac gcgttgttgg tacggaaggc      1800
     tgaccgtttc gccacggacg gaccaccgac cgagtacgct gagcaccata tcaaggtcag      1860
     cgagaaacag gaacccatag cctccccacc ataccgattg tcgcaaagta agaaagcgct      1920
     attagaaaga gaattgaaaa actactcgac gaagacatca tcgaggaatg tgagtcccct      1980
     tgggctgcga atgtagtgtt ggtcgctaag aaggatggag gagttagact ttgcgtcgat      2040
     tatcgccagt tgaacgcagt caccgaaccc gaccgatatc cactcccgag aatggaggat      2100
     attctccacg cagccaagac gtcaaatttt atgactacat gcgacctaag gtccggctat      2160
     tttcaagtag gagtcacacc ctcgcataga gatatgaccg cgttcgtcac gcctttaggt      2220
     acgtttaggt ttaaaagaat gcctatgggt ttaagaaact ccggagcgac gtttcaacga      2280
     ttagtagaca ggttcaagtc tggcagaatt ttgtcggacg ttacaatatt agcctacctg      2340
     gatgacatta tcatcttgag cgatacgttt gagaagcacc tacaagacct agaagccgtc      2400
     ctcgaccgtc tgaagatgta taaccttcgt gtcaaccgcg agaaaagcta ttttgcccgc      2460
     gattcggtga aattcttagg ccatttgatc gtcccgggag gtatacaagc cgacccagac      2520
     aaggtagaag ccatagtagg tatggccgct ccgcagaaca caaaacattt gaagacgttt      2580
     ttgcaaacat ctagttggtt tcggcgatac attcctaact acgcccgaac agctaaacca      2640
     ttaacggacc ttctcaagaa gagtgccacg tggacttggt cttcgagtca gcaggaagct      2700
     ttcgaggaga tcaaggaact actcgtttcg gcacccattt tacgtcaagc agacgaaacc      2760
     aaaccgtata cattaagaac ggacagcagt ggatattgct taggggccgt tttaatgcag      2820
     ggagaggcgc aagacgagag gccaatcgaa tatgcaagcc gtttgctcct ccccgccgag      2880
     aggaactatt cgacgacaga gcgcgaagct ttggcggtcg tgtgggccgt gaccaagtac      2940
     aggggctata tcgaagggtc ttcagtggtc gtgaagtctg accaccaacc gttacgctgg      3000
     ctcatgagcg tgaagtcacc cagcggtcgc cttgctaggt gggccctgac cctccaggag      3060
     ttcgacctga agatcgaata cacgccgggg agatccaacg ctatcgccga tacgctttcg      3120
     cgaccgccgt gcggtgacga gaggagctgt gatctttgct tcgctgaagt cgatctaccg      3180
     gcaaggagcc ctcgtgacgt tagagataac caactcaaag atcctgcgct cttggagatt      3240
     ataaaggatt tggaggaacc ccaggaaccg tttaggggga gaggctggtc tgatagaggt      3300
     ttcattctgt ccgacggaat tctgtatcgt tacggaccag aagaagaaga tgaagagacg      3360
     gcatgtctcg tagtgcccga acatgaacgc agcaaggttc ttgctgatta ccacgatgcc      3420
     gccacagcgg gtcatttcgg cgtagatcgt acgctacatc gcctgagagc tagatactac      3480
     tggccgggca tgaaacagtc tgtggcagat tatattaaac gatgcgtcga ttgtcaacgt      3540
     tacaagacgg ataataggaa gcccgctggt ttgctccaaa cgccggccac tacccggcgc      3600
     tttgaagtaa tcgccgtgga tctctttggc cccttaccgg aaacagctga taagaacaag      3660
     tggatcctta tcgttgagga tacttgcact cgctgggtcg aactattcgc tctgcgaaac      3720
     gctaccggtc ccgaatgcgc caaactatta gtcaatgaag tctttctacg atatggtgtg      3780
     ccgaggcgcg ttctcagtga caacggcgta caatttgtta gtgaggtggt acaacaggtt      3840
     tgtcatacgt ttggtataac tcagtcgttg accccgcgat accacccaca agcgaatccc      3900
     gtggagagga agaatcgcga cctcaagcca caactgtcga ttttagtgcg gcgcgatcac      3960
     aaagtctggg atactcacct agccgctatc cgtttcgcca tgaactccgt tatcaccagc      4020
     agtacaggtt attcaccggc gtacctgact ttcggtcgcg agatccgcgc gcctgccgat      4080
     gccgtcacgg atatgagagc catcatcgag agtgataacg tggtgaccgt gctgacccca      4140
     tacctgaaga agttatcgtc cgtcttactg gacgctcgag acgtccacga gaagaaccaa      4200
     gcaatccaga agcgaaacgc tgacgaacat cgtcgaccag cccccgacta cgccgtcggt      4260
     gatcttgttc tcttgaagac acaaggcgcg aatgacacct ggcgcggtca gacacctaaa      4320
     ttcattccta ggagggacgg accttacagg gtcaaggaaa tttcgagtcc tacaacgtat      4380
     gtgctagagc aagttggtag ctgcgagtct gttggtaggt accatgtctc ccaattgacc      4440
     cctttcgtag gcgatgcggt tccccctgtg aaagaaaaga aaaggagagg taggccgagg      4500
     aaggtagtcg tcgcataatc catacacggg acgtttgtat ggatatgagg gggagga         4557
//
ID   Gypsy-33_MSe-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-286
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 959-959 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 286 BP; 63 A; 83 C; 70 G; 70 T; 0 other;
     tataacgagg caggtagata ggtacacgcg catcggcgcg gccgctagta agtacgtcgc        60
     gagcgcgcca tcacccccgc actccgccac gtttctccta cgacaccgtg ccggtccgcg       120
     ccagtcgagc gggaactttc gtgagtgcgc ccacgtcgtg tagctttgcc accgcggctc       180
     gcgcgcatac cctatgtact taccgaatat tgttttaatg cgtattgtat gtgcccactt       240
     atatatatat tgcaataaat gtatagtaac tgaatacccg gttata                      286
//
ID   Gypsy-33_SI-I repbase;    DNA;    INV; 4730 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_SI_;
KW   Gypsy-33_SI-LTR; Gypsy-33_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4730
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 456-456 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2146-2568] - Reverse transcriptase
CC   Positions [3598-4086] - Integrase core
CC   'GTAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..1986
FT                 /product="Gypsy-33_SI-I_1p"
FT                 /translation="MNRDQLDIAPMEALQKEAIAAGIPFTPDRAALIEAIL
FT                 SHRERHGSTANGGETSRGTEVEGDGAITEQLRQSVELLAETMKQQHRDMLL
FT                 QQQQFMALVLERLSPAEGPAQNTGAPSGVRSVLPPEREQSSFGSSTETPRR
FT                 EEGDRLDRLPRGNVVQCLATQIPEFAGSREENVAAWIRRVDHVGRIHGATD
FT                 GVLLLAASSRFRSGVKNWYDSVEGEALESWHALKNELSLMFESNEFAYKQL
FT                 QTVQGKKWQHAKESFHDYAIAKLALMNRLDLSTKEKIHLLIGGIGIGSVKS
FT                 AALTLPDDSVSRFLVKMRCLAEGAVEIDKKPSAPASAQISKERHCRNCGKK
FT                 GHGHKDCRAEPSCFYCKERGHRQFDCPVLKKKTSSNPAQPKRRALTAAAVE
FT                 EETEEDDVVAAINATSGKRLELSGPCATVTSVNQISCDLPALTDTGSPVSI
FT                 MRFQIYKEFLLPGNVKLLPTGKRLRGITNDRLTVLGKTSAPITLETLGDKS
FT                 FTVDFFVVDDSACLPSMLLGRDFVAGESLSLKYRTAKTDSANIIAELCQIE
FT                 PEVTTETAESIIRETNIDYGENAKRELINTITRVRNEEVEPVEDD"
FT   CDS           3514..4470
FT                 /product="Gypsy-33_SI-I_2p"
FT                 /translation="MRKRIKDYLDNCLTCLTANESANRFEGETSLYPPATA
FT                 MMQIVHVDHFGPLTEAADGSKHILVVIDSFSRFTWVTPTKTTATSETVKIL
FT                 RHIFSTFGNPSEIVSDRGTAFTSREFAEFVERGRIKHRKVAVAAPWANGLA
FT                 ERVNRFIKSTLTKILSEPNDWHNKIVDLQYIINNTRHSGIGTTPAKLVLGY
FT                 DQRNHLDYPLAQFTRIWASVDDDIANDRSEASEAALQATEKLRNYNKSYRD
FT                 RRLRRPSVYQVGDLVSIRDTRVKPGTSGKIKPSYKGPYRVTKDLGNNRYVI
FT                 TDIPGFNLAPRALDTILSSDRLKPWIR"
XX
SQ   Sequence 4730 BP; 1247 A; 1165 C; 1336 G; 972 T; 10 other;
     gcctcagaag tgggataaac gcccgcgttg tcggagtcga gtgaagacat ttcgcgaggt        60
     gctgctccga gaaggaattg gtaccggtgg cgggaaaagc gacctagacg ttcttcggag       120
     cagacggagg tcggtcgcgg ttacccgtga gcaacgtaaa tttcgtcgtg tcgagagtgt       180
     cggtggcgga gactgtcgng cggtgctaca atgaatcggg accagctgga catagcgcca       240
     atggaggcgc tacagaagga ggccatagcc gcgggcatcc ccttcacgcc ggaccgcgcg       300
     gctttgatcg aggcaatact ctcccacagg gagaggcacg gctccaccgc taacggagga       360
     gaaacgagcc gcggaacaga agtcgaggga gatggtgcaa taacggagca gctgcgccaa       420
     tcggtcgagc tgctggccga aacaatgaaa cagcagcacc gcgacatgct gctccagcag       480
     cagcaattca tggcgctcgt cctggagcgc ctgagcccgg cagaagggcc agctcagaat       540
     actggtgcgc ccagcggcgt gcggtccgta ctgccgccgg agcgcgagca gtcgtcgttc       600
     gggtcctcca cggagacccc gagaagagaa gagggcgatc gcttggaccg cctcccccga       660
     ggcaacgtgg tccagtgcct ggcgacgcaa ataccggagt tcgccggctc ccgggaagaa       720
     aacgtcgccg cctggatcag gcgcgtggat cacgtcggac ggatccacgg agccacggac       780
     ggggtcctgc tgttagcagc ctccagccgg tttagaagcg gagtcaagaa ttggtacgac       840
     tccgtggaag gagaggcgct agagtcgtgg cacgctctga aaaacgaatt gtcgctcatg       900
     ttcgagagca acgaattcgc ctacaagcaa ctccaaacag tccaagggaa gaagtggcaa       960
     cacgcgaaag aatcgtttca cgactacgcc atagccaaac tggccctgat gaaccgcctc      1020
     gacttatcca ccaaagagaa gattcacctc ctcatcgggg gaatcggcat cggctcagtg      1080
     aagtcggcag cnttgaccct gcctgacgac tcggtgagtc gattcttagt naagatgcgc      1140
     tgcctggcgg agggcgcggt ggaaatagac aagaaaccga gcgcacccgc cagcgctcag      1200
     atctcgaaag aaagacattg tcggaattgc ggcaagaagg gccacggcca taaagactgc      1260
     agagccgagc ccagctgctt ttactgcaag gagcgggggc atcggcagtt cgactgccca      1320
     gtgctgaaga agaagacgtc gtccaacccg gcgcagccga agcgccgggc gctcacagcg      1380
     gcagcggtcg aggaggagac ggaggaggac gacgtggtcg ccgccattaa cgcgacgagc      1440
     ggcaagcggt tggagctgag cgggccctgc gcgacggtca cgtccgtcaa ccagataagt      1500
     tgcgatctgc cggccctgac cgacacgggt agcccggtgt cgatcatgag attccaaatt      1560
     tataaagaat ttttgttacc gggaaatgtg aagcttttgc ccaccgggaa acggttgcgt      1620
     ggtattacca atgaccgcct cacggtcctt gggaaaacaa gcgcgccgat cacgctagaa      1680
     acactcgggg acaagagctt caccgtggat ttctttgtcg tcgacgatag cgcgtgtttg      1740
     cctagcatgc ttctcggtcg tgacttcgtc gccggagaaa gcttgtcatt gaaataccga      1800
     acggcgaaaa cagattcagc aaacattata gccgaacttt gtcaaataga gcccgaggtc      1860
     acgacggaga cggcagagtc gatcattcgc gaaacaaata ttgattacgg ggagaatgcg      1920
     aaacgcgaac taataaacac gatcacgcgc gtgcgaaacg aagaggtcga accggtcgaa      1980
     gatgacncgg tttacgcgta cgcgccgcgg cgttttgcct acgcggaacg catagagttg      2040
     cgaaaaattg tagaggactt gctccaaagg ggcattatcc agcccagtcg atcgtcatac      2100
     tgcgcgcgag tgattccgat ccggaagaaa aanggtctgc tcaggctatg cgtagacctg      2160
     aggccgttga atagccgcat tagtaagcaa aaatatccgt ttccggtcat tgaagattgc      2220
     ttggcgcgac tattcgggaa aacagttttt accttgttag atttgaaaga cggcttccac      2280
     caaattagag tctgcgacga gcacacgcat tactttgctt tcgccacgcc ggatggccag      2340
     tatgaatatc gctttctgcc gttcggntat tccgaagcgc ctgcggagtt ccagaagcga      2400
     attctacaaa tcctggaacc gtttataaaa aaggatcaga tacttgttta tattgatgat      2460
     atattaatag cgtcggatac agtggaggaa aacttgacta gcctatgcga agttctacta      2520
     caattgaaac ggtatcgctt cgaattaaat tataaaaagt gccaattttt gcaaagtcgg      2580
     gtcgagtttc taggctatat aataaccaaa gaaggaatca ctctaagcca gagacacacc      2640
     gaagcgatca gcggctttag gcaaccacga aatgtgcacg aactttagcg cttcctaggg      2700
     ctcgtaggtt actttcgaaa gttatcaaaa acttcgcgct taaggccggc ccgcttcaca      2760
     aattattgag aaagaatgtc gtgtatgatt tcgacaagcg tcacgttgcg gcctttgagt      2820
     cgttaaaaca cgagctgaca cgagctctcg tgctagcctt gtacaatcct aacgccgaga      2880
     cggaactcca cactgacgcg agtagcgtcg gactgggtgc gatcctcctt caaagacaac      2940
     ccgaccgtcg atgggcggcg gtcgcttact ttagtcggtc aactaattag gccgagaaaa      3000
     actatcatag ctacgagctc gagatgctcg cggtggtacg cgcggttgaa cgcttccgcc      3060
     tctacttgta cgggaaagat ttcacagtcg tgacggatac ccatgcaatc gtctatgccg      3120
     taaataaggc gaatcttaac ccgaggatcg catggtggat gttgacgcta caggactatc      3180
     gttttaaggt ggtgtaccgc cccggagtgc ggatgcagca cgttgatgca ttgagccgat      3240
     gcgtgggact ggtgagggaa cttcccctcg agcgcgagct ggaatttcgt caactggcag      3300
     atccgcgaat aaggaaatct gctctgaact cgaacgcggc gatagcagta aatacgcgct      3360
     agtagacggt ttgctgtatc gcaaagtcga aggtagtttg aaattcgtaa ttccagaatc      3420
     gatgattgct ccgagcatca gagcgcatca taacgaggtg ggccatgacg attttgataa      3480
     aacggcgtga cgcaaaacta ctggttcatc gcgatgcgaa aacgtataaa agattatcta      3540
     gacaattgtc tcacgtgctt gacggctaac gaatcggcga atcgtttcga gggggaaacg      3600
     tcgttgtatc ccccggcgac ggcgatgatg caaatcgtcc acgtagatca tttcgggccg      3660
     ctcacggaag cggcggacgg cagcaaacat atcctcgtcg taatcgattc cttttcgcgt      3720
     ttcacgtggg tgacgccgac caagacgact gccacgagtg aaacggtgaa aattttacgc      3780
     catatctttt cgacgttcgg taacccgagc gaaattgtat cggacagggg gactgctttt      3840
     acgtcccgcg agtttgctga gttcgtcgag cgtggtagaa tcaagcatcg aaaagttgcc      3900
     gtcgcggcac cgtgggctaa cggtttagcc gaaagggtga atcggtttat taaaagcact      3960
     ctgaccaaaa ttctaagcga gccgaacgat tggcataata agatcgtcga cttacagtac      4020
     ataattaaca atacccgaca ttccggtatc ggtacgacgc cagctaagtt agttctcggg      4080
     tacgatcagc ggaatcatct cgattatccg ctcgcgcagt ttacccggat atgggcgtcc      4140
     gtcgacgacg atatagcgaa cgaccgatcc gaagcttccg aagctgccct tcaggcaacc      4200
     gaaaaattaa gaaactataa taagtcatac cgagatcgcc gtctgcgacg accatcggta      4260
     taccaagtcg gagatttagt ctccatacga gacacgaggg tgaagccagg gaccagcggc      4320
     aagattaaac cgagctataa aggtccatat cgagtgacaa aggatctagg taacaaccgt      4380
     tacgttatca ccgacatccc tggattcaat ctcgctcctc gtgcnttaga tacgatcctc      4440
     tcatcggacc gtcttaaacc gtggatcagg ncgccacctc cgatgggaag agagaaaacc      4500
     taagcgctta aaaatgtaaa cttttcatag aatataagtt gntcgagagt catagtttaa      4560
     gttaggttaa ggtaagttag gttaaggtaa attagttgta gacctgtcaa aaaaaagaaa      4620
     gagaagaagt gtgtacgtga aataagtttt nagtgtccgt gtagtagtgg cgccgagacg      4680
     gatcgaggag cgaaggcttg gaggaccaag cgtgtgcagg atggccgagc                 4730
//
ID   Gypsy-33_SI-LTR repbase;    DNA;    INV; 544 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_SI_;
KW   Gypsy-33_SI-I; Gypsy-33_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-544
RA   Jurka J.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 457-457 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 544 BP; 111 A; 150 C; 171 G; 111 T; 1 other;
     tgtaagcggc gaaacgcgac ggccgcccga tggcgccagt tcgcggagac gatcgcgagg        60
     ttcccgcgcg attgcgatgt gcgtacgccg ctcaatacgt catgtcttcg tcaccgcgcg       120
     tatcgaccaa tctgattgat tggtcgacca cctcgctccg aaatcccgga gtaacgaaca       180
     gcggcgaaca ctcttagttc cgtcggcgtt ggagcaacac gctcctttcg cgagagtcct       240
     gtcgagtcga gggtcgtgat attaagtctg taagcgtaac gtttgtaaga tctcgtccga       300
     ataaacggga gtgattccga agcgcgtgtc gatcagttgc ctgtcccttt tcccgagcat       360
     ccgataacgg gagggagccg gctcgccatc ttgncagtgg agcacgcggt ctcgctcgcg       420
     aaccggagta gcgcgagtgc ggggtgtccg ccgccgtgtc gtcgtcgtcg tgagtagcgc       480
     ggtcgtctcg aatagaggag agcgatccgg gcgcgaaaac gaagttcgaa aggagaaact       540
     taca                                                                    544
//
ID   Gypsy-33_SiCu-I repbase;    DNA;    INV; 4458 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4458
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5055-5055 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4320
FT                 /product="Gypsy-33_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPKKEAQAQSAASSSAQANTAADTSREEDGYETVES
FT                 DSTEVVTVSPPHSTASTSKKGPVPPPKPRKRRSKTKITVPGSATQTTPPPP
FT                 NPKPKKKKTMTSTIGVLQPFDSSVDDFTVWEGTFRSFLSANALDPSSSPAT
FT                 ETQCQGIFLSSIGIKNYALLTNLCAPTALATVSLKDLIKKMKAHFKPAPKA
FT                 LAERFKFMGRKQRHGETVSQFLVSLRELATHCDFGTDLETRLRDQLIFGLT
FT                 SERLQRSIFGKPDNIGLDEVMQTATAMETAEASTALIRQQSSASPHPPSEQ
FT                 HVHKATSGRNQQQQQNSKYRNKSQVTPQQGKSYNINNHNHKNSKFGKNNWK
FT                 NNSDNQQQQSCSRCGSSKHTAWKDCPHHDVICNSCGKQGHFAHLCKSRNYQ
FT                 KQQQQRSPPASTNIVHLDSVVTDLRAISSVHKTEKEINLNVEINGIPTIME
FT                 LDTGCQTSILSIDFWKQLGSPPLQKSSHVFRTYTKELFYPVGDLHCTLTHN
FT                 KQTVQIILPVSPGNSLFGRNLLKLIHIDWHNVQNKLTEESVNSVSSEKSKL
FT                 FALIDEFKDIFAAPTSEDRIKNFQARIHLKEDATPKFLKARPLPYAVRTKV
FT                 DRELDVMEKCGYISKIDHSEWASPLVVVAKPNGKVRITGDFKSTVNSQLNV
FT                 TQYPIASPDDIFASVSGGNSFSKLDGTNAYHQMEVAQECRKFLVINTHRGL
FT                 YQYNVLPQGVASSPAIFQAFSDTMLRAINMTGTYIDDTLASGTTDQEHLNN
FT                 LRTIFEQMRKYNYKLSKDKCEFLCNRVKFLGHIVSRDGIATSPDKIHDIVN
FT                 LKVPSNVSQLSSFLGLIQFYAKFMPNLSDIVTPLYRLTRDNVPWKWCSSCQ
FT                 ASFETVKSVISKAPVLAHFDPQLPIGIAADASSTGLGCVLFHKYADGSERP
FT                 ISFASKLLSDTERNYSQIEKEGYSIVFGIKRFFKYLCARKFILVTDHRPLL
FT                 KIFGNKSQLPPYVATRLHHWSLFLSQFQYEVQYRKSADHGNADALSRLTVN
FT                 PPTPNFHIEEVINEITNENLQLLPVTASAIRLASSRDPVLSKVMQLCLYGW
FT                 PAKLRPEDQPLQPYHSRKEELTVIQGIVQWGIRVIVPPSLQAKVLQQLHEC
FT                 HFGVVKMKSLARQHVWWPQIDSQIEDTARSCTLCQANAPNPASAPLHPWQF
FT                 PEKPWQRLHADLAGPLNGKMYLIVVDAHSKWPEVYNMNSNTTSTAVMSKLA
FT                 DAFARFGIPQQLVTDNGRQFTSGEFANFCKFNKVNHVLCSPYHPRSNGEAE
FT                 RFVRTFKNAMRASDLPPDLRLTRFLLTYRTTPHATTGVSPAELLQQRKLRT
FT                 LLDLLHPDITSSVQAAQQQQEQHYNHRVKMRKLAPGQAVWVQSFSKGEEKW
FT                 SQGTIIKAIGPVSYSVQIGDREHRRHVDHIRPARPSSVPPPASSQQVPSP"
XX
SQ   Sequence 4458 BP; 1301 A; 1240 C; 876 G; 1041 T; 0 other;
     ttggcgacga ggttgtgtga agctcaagtt gccccgagcc cacacgaacg aagaaaagtt        60
     taagtttttg tgcatggtcc catgcctccc aagaaggaag cgcaagcaca atctgctgct       120
     agctcctcag cgcaagcaaa cactgctgct gacacatcca gggaagaaga cggttatgaa       180
     actgtagaaa gtgactccac agaagtcgtc acagtttctc ctccacactc tacagcatct       240
     acctctaaaa agggtccagt tccacctcca aaaccaagga agagacgcag caaaaccaag       300
     attacagttc caggttctgc tactcaaacg actcctccac ctccaaaccc aaaacctaag       360
     aagaagaaga ccatgacttc aacaatcggt gttcttcagc ccttcgactc atcagtcgat       420
     gacttcaccg tgtgggaagg gaccttccgg tccttcctat cagccaacgc attggatcca       480
     agctcgtctc ccgcaacaga gactcaatgt caaggcatct ttctctcctc cataggcatt       540
     aaaaattatg ccttgctcac aaacctgtgt gcaccaaccg cactagcaac ggtgtccttg       600
     aaggacctca tcaagaaaat gaaagcccac ttcaagcctg ctccaaaggc ccttgctgag       660
     cgcttcaaat ttatggggag gaagcagcgt catggtgaaa cggtgtccca gtttctcgtt       720
     tcattgagag agctggcgac acactgtgat tttggaactg acctggagac aagactgagg       780
     gatcagttaa tctttggatt aactagcgaa cgcctacaac gctcaatttt cggcaaaccc       840
     gacaatattg gattggatga agtaatgcag accgccaccg caatggaaac agctgaagcc       900
     agtacagctc tcatcaggca gcagtcctcc gcatcacccc accctccttc cgaacaacat       960
     gttcacaaag ctacaagtgg taggaatcag cagcagcagc aaaattccaa gtatcggaac      1020
     aagtctcaag tgacccctca acaaggcaag tcatacaata ttaacaatca taatcataaa      1080
     aatagtaaat ttggaaaaaa taactggaag aacaacagcg acaatcagca acagcaatcg      1140
     tgttcgagat gtggctcatc caaacacaca gcatggaagg attgtcctca tcacgatgtc      1200
     atctgtaact cgtgtggaaa gcaaggtcac tttgcacatc tgtgcaaatc ccgcaactat      1260
     cagaagcagc agcaacagcg ttctcctcct gcctccacca acattgtcca cctcgattcc      1320
     gtcgtcacgg atctccgagc aatttcctca gttcacaaaa cggaaaagga aatcaacttg      1380
     aatgtggaaa tcaacggtat tcccactatc atggagctcg acacaggctg ccaaaccagc      1440
     atcctgtcta tcgatttttg gaagcagctt ggatcccctc ctctccagaa atcatcacac      1500
     gtcttccgaa cgtacacaaa ggagctcttc tacccagttg gagatcttca ttgtacgctc      1560
     acccacaaca agcaaacagt gcaaatcatc cttcctgtaa gtcctggtaa ctctctattt      1620
     ggtagaaatc tactcaaatt aatccatatt gactggcata atgtacaaaa taaattaact      1680
     gaagaaagtg ttaatagtgt cagtagtgaa aagagcaagc tttttgcact gatcgacgag      1740
     tttaaagaca tttttgcagc ccccacctca gaagacagaa taaaaaattt ccaggcaagg      1800
     attcacctaa aagaagacgc tactccaaaa ttcctcaagg cacgacccct cccgtatgcg      1860
     gttcgaacca aagtcgaccg tgagctggac gtgatggaga aatgcggata catatccaaa      1920
     atcgaccaca gcgaatgggc atctcctctc gtagtcgtag ccaagccaaa cggaaaagtc      1980
     aggattactg gggacttcaa gtcaactgta aactcccagc ttaacgtcac ccagtaccca      2040
     atcgcatctc cagacgacat tttcgcctca gtcagtggtg gaaactcatt ttccaagctg      2100
     gatggcacaa acgcgtacca ccagatggaa gtcgcacagg agtgcagaaa atttttggta      2160
     ataaataccc accgtgggct ttaccaatac aacgtccttc cacaaggcgt tgcatcgtct      2220
     ccagccatct ttcaggcctt ttcagacacc atgttacgtg ccatcaacat gacaggcacc      2280
     tacatcgacg acacgctcgc ttcaggtaca actgatcaag aacatttaaa taacttgcgt      2340
     actatttttg aacaaatgcg aaaatacaat tacaaactct ctaaggataa gtgtgagttt      2400
     ttgtgcaatc gtgtcaagtt tttaggtcat attgtatctc gtgatggtat cgctaccagt      2460
     ccggataaga ttcacgacat tgtgaattta aaagtgccaa gcaacgtgtc tcaactgtca      2520
     tcttttctcg ggttaattca attttatgca aagttcatgc ctaatttgtc agacattgtt      2580
     actcctctct acagactcac tcgtgacaat gttccgtgga aatggtgctc ctcatgtcaa      2640
     gcttcttttg aaactgtaaa atctgtcatt agcaaggctc cggtacttgc tcatttcgac      2700
     cctcaactgc caatagggat agccgctgat gctagctcca cgggtctcgg ttgcgttttg      2760
     ttccacaaat acgcagatgg atccgaacgc ccaatctctt tcgcatccaa gctcctgtcg      2820
     gacacggaga gaaactactc gcagattgaa aaagaagggt attcaatcgt ttttggtata      2880
     aaaagatttt ttaaatacct atgtgcccgt aaatttattt tagtgacaga tcaccgccca      2940
     ctcctcaaga tttttgggaa caagtcacaa ctcccaccct acgtagccac ccgcctacac      3000
     cactggagcc tcttcctcag ccagttccag tatgaggtgc aataccgcaa gtcagctgat      3060
     catggaaatg cggatgccct ctccagactc accgttaacc cacctacacc caacttccac      3120
     attgaagaag tgattaacga gatcaccaac gaaaacctac agctacttcc tgtaacagcc      3180
     tcagccatac gtcttgcctc cagtcgagat cctgtcctct ccaaagtaat gcagttgtgt      3240
     ctttacggtt ggccagccaa actacgccca gaggatcagc ctctccaacc gtaccattca      3300
     cgaaaagaag agttgacagt tatacaaggc atcgtacaat ggggaatacg cgtcatcgtc      3360
     ccgccctccc tccaagcaaa agtcctgcaa caactgcacg agtgtcattt tggagtcgtc      3420
     aaaatgaagt cactcgcaag acaacacgta tggtggcccc agattgactc tcaaatcgaa      3480
     gacacggcac gttcctgtac cctgtgtcaa gcaaatgcac cgaatcctgc ctccgccccc      3540
     ctgcatcctt ggcaattccc agagaaacca tggcaacgac tacatgcgga tttggcaggc      3600
     ccactaaatg gaaaaatgta cctcattgtt gtagacgctc attccaaatg gcccgaggtc      3660
     tacaacatga atagcaacac aacgtcaaca gcagtcatgt ccaaactagc ggacgctttc      3720
     gctcgtttcg ggattccaca gcagctggtc accgacaacg gacgacagtt cacctcagga      3780
     gagtttgcta atttttgcaa atttaataag gttaatcatg tcttgtgctc tccttatcat      3840
     cctaggtcca atggggaagc cgagcggttc gtcagaacct ttaaaaatgc aatgcgcgct      3900
     tcggacttgc ctccagacct ccgtctaacc agattcctcc tcacctacag gaccacacca      3960
     cacgccacca ccggcgtctc tccagcagaa ttactacagc agcgcaagtt gcgcacacta      4020
     ttggatctac tccatcccga catcacctca agcgtccagg cagctcaaca acagcaggaa      4080
     cagcactaca accaccgggt caagatgcgt aaactcgccc ccggccaggc tgtctgggtc      4140
     cagtcctttt ccaaagggga agagaaatgg tcacaaggaa ccatcatcaa ggccatcgga      4200
     ccagtttctt actctgtcca aatcggggat cgagagcacc gccgccacgt ggaccatatt      4260
     cggccagcac gtccatcatc ggttccacct ccggcatcat ctcaacaagt tccttcaccc      4320
     tagtctcaag caaccaaatt ccttttcttt ccctctccta caaagtcacc ttaaccttca      4380
     tcaaggtctt ccggtcatcc accacaacct ctagcttttt aaaaataaaa ttatgttttc      4440
     aagttagggg acagtaaa                                                    4458
//
ID   Gypsy-33_SiCu-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-255
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5110-5110 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 255 BP; 77 A; 64 C; 30 G; 84 T; 0 other;
     tgtagaatat gaatatattt acatgtggct acccaaatta tcataattgg gtagtcccct        60
     aatcaaacaa ttatgtatat tgtttgagta cggcttcacc gtactcacac cagctttctt       120
     acaagtcacc ttcagtgact cttgtcattc cttaaccact ctccgttcaa taaacttata       180
     gctaaaacta gctctccgtc ttctcatcac cactcacatc atttcacata agatagcata       240
     gtagcatatc ttaca                                                        255
//
ID   Gypsy-33_SiOr-I repbase;    DNA;    INV; 5793 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5793
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 367-367 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..5654
FT                 /product="Gypsy-33_SiOr-I_1p"
FT                 /translation="MPRTSRKRHSSSSSSSSDSSDYGRYERNRRSRRQRKR
FT                 RVSPTPESHTPPRSSMPVAVDTDGLATPSSVQFSGLEEANQKINQLEQLVK
FT                 DLMDTRVAKSPRITIKSDCIPEFSPDMPHLTSAMWIDKIDQLAKINGWDEP
FT                 TIIYHMQARLSGLAKSWYNSLNNYDNSWKQWKQMILDAFPEHRDFPTTLKK
FT                 MISRKKLNEESWTEYYFAKNELLRSCSIVEKNAVSMIIDGISDPVIQNGAK
FT                 AGRYETPEVLYKEYLAALGPVERPQVPVREKYNKTFVDNRHRKPVYKFSKQ
FT                 SYGTPKENQHRPKCFNCGTLGHISTTCSKPRIECRKCHRLGHMERNCFKNK
FT                 PAEQPGTSKQVMAMALPEKTSINKYVVSCKVNGLICSGLIDTGCAAVTLRY
FT                 TEAKQCGVQWEPCNVLINGYAGGQSKAIGQCSIKLEVDLADAIVSALIVPD
FT                 ELQEVAVMIGQPFINKTNVVLVVKGDQIRLFSSQMLDLPEVDQLPPSKIKM
FT                 SVSEDVVIPPNNIGHVKFSTASDYNGDLFIDFHARQKPRNEYVVPRCVAST
FT                 TAGILPILNISNNPLQFKVMDTIARGLPCVPETSPKGVSVLKVNVKLSKPL
FT                 LMSDINCDLTLNETEKKRLLDLLNKYRDCFAQDISELGCIHNNKMEITLSD
FT                 SKPVTYRPYRLSFLEREKVREIIRDLLDNHIIQESFSPYASPIILVKKKTG
FT                 ETRMCVDYRALNAKTIKDCYPLPRIEDCLERLKGSKYFTTLDMASGYHQIP
FT                 MSKESIAKTAFVTPDGHYEYLRMPFGLANAPAVFQRSINQILGSLRFTTAL
FT                 AYMDDILLPSSTFEKGYEALETILKVFQDAGITLRPNKCYYFRRNLEYLGH
FT                 EISSEGIRPGKAKIIAVEKFRTPKNPHEVRQFIGLASYFRKFVKNFAQVAR
FT                 PLTMLTRKNQEFKWGDEQQKSFQQLKHILCTRPVLTIYDPELETELHTDAS
FT                 KLGIGGILLQKQKNGKLTPVQYFSRQTSKEEQRYHSYELETLAVVSCLQRF
FT                 RIYLLGLEFKVITDCSSVRSTFSKKDLIPRIARWWLVTLEFNFKVEYRPGP
FT                 RMSHVDALSRNPVEEPTNEEMDIDVFTISITEDDWVLSAQLMDTRCKYLHQ
FT                 VLSEHPKDKEEEAIHKDYVLKNNRIYKITDDGLKWMVPKNARHAVTAYHHD
FT                 MAGHFALDKTLSLVSQYYWFPLMRKYIKQYIHTCLMCAYNKEPAGKRPGLL
FT                 HPIEKVATPMDTVHIDHLGPFVKSTKGNMYLIVAVDSFTKYLFAKAVTSTK
FT                 VGPLIKFIDEITEVFGTPRRIISDQGTCYTSKIFKDYTAKLNIKHIQNATA
FT                 TPRSNGQVERYNRTLLTGLSTTTDDEAKWDQNLSRIKFGINSSVCKGTGKT
FT                 PHELMFGYRPRGPNDSFLSSLVGTSIYKNTLSERRDQAKCHIEKTQALQKE
FT                 RYDLRRLANVNYKVGDQVLIKRNVGINDGKSKKLLPKYAGPYIITAVLDND
FT                 RYVVKDLPGSERSQKKYEGICAIDKLKPFNIRCDSDSDVSQEENVPQEQHV
FT                 XRRENVSLEEDVPQEQYVARRENVSLEENVPQEQHVARRENVSLEEDVPQE
FT                 QYVARRENVSLEEDVPQEQYVARRENVSLEEDVPQEQYVARRENVSLEEDV
FT                 PQEQYVARRENVSLEEDVPQEQYVARRENVSLEEDVPQEQYVARRENVSLE
FT                 EDVPQEQYVARRENVSLEEDVPQEQYVARRENVSLEEDVPQEQYVARRENV
FT                 SLEENVPQEQHVARRENVSLEEDVPQEQYVARRKNVFLEEDVPQEQYVARR
FT                 ENVSLEEDVPQEQYVARRENVSLEEDVPRTQNAAVDLRQIITRRKMAARKL
FT                 K"
XX
SQ   Sequence 5793 BP; 1913 A; 1085 C; 1258 G; 1536 T; 1 other;
     gtgcagcggt gggatagtac acgtgctata ctgtgaacgt ttatatactt tttgtgattt        60
     gattaaaact acagggtgtc ccagaaataa gttggctgga ttgtgatttt gtggtgtgag       120
     aaagtttatt ttggattata tttgacattg tttaaaggta ggagtagact ttaagctatt       180
     ttaaaatgcc aagaacgtct cgcaaacgtc atagttcgtc aagttcaagt tcgagcgaca       240
     gttctgatta tggccgttat gaaaggaatc gaagatctcg ccgtcaacga aaaaggcgcg       300
     tttcaccaac acctgaatca catactcctc cacgttcgtc tatgccggtt gctgttgata       360
     cagatggcct agccacacca tcaagtgtac agttttcagg tttggaggaa gccaatcaaa       420
     aaattaatca actagaacaa ctggtcaaag acttaatgga tacacgggta gctaaaagcc       480
     ctcgtatcac tataaaatcg gattgtattc ctgagttcag cccagatatg ccccatttga       540
     catcggctat gtggattgac aaaatcgacc aactggcaaa gattaatgga tgggatgagc       600
     caacgattat atatcacatg caagcaaggc tctctggatt agctaaatcc tggtacaata       660
     gtttgaacaa ttacgacaat tcttggaaac agtggaagca gatgattttg gacgctttcc       720
     ctgaacaccg cgactttcca acaactttaa agaaaatgat ttcgaggaaa aaattgaatg       780
     aggaatcttg gaccgaatat tattttgcta aaaatgaact tcttagatcg tgcagtatag       840
     ttgagaaaaa tgctgtttcc atgattatcg atggaattag tgaccctgta atacaaaatg       900
     gtgccaaagc tgggcgatac gaaactccag aagttttata caaagaatat ttagccgcgt       960
     tgggtccagt ggaacgtccg caggtcccag tgcgggaaaa atacaacaaa acgtttgttg      1020
     ataataggca tcgtaaacct gtttacaaat tttcaaaaca aagctacggc acccctaaag      1080
     aaaatcaaca ccgtccaaaa tgtttcaatt gcggaacttt agggcacatt tccactactt      1140
     gttccaaacc acgtatagag tgcagaaaat gccatcgttt gggacatatg gaaagaaatt      1200
     gtttcaaaaa taaacctgcg gaacaaccag gtacttcaaa acaagtaatg gcaatggcct      1260
     taccagaaaa aacatcaata aataaatacg tagtatcgtg caaggttaat ggacttattt      1320
     gcagtggcct tatagatacc ggatgtgctg ctgtaacact aagatacact gaggcaaaac      1380
     aatgtggagt ccaatgggag ccgtgcaatg tgctcattaa cggctatgct ggaggacaat      1440
     ccaaagcaat tggccaatgt tcaatcaaat tagaagttga tttagctgat gccatagtgt      1500
     ctgcattgat tgtgccagat gagcttcaag aggtagctgt gatgattggt caaccgttca      1560
     ttaacaaaac aaacgttgtt ttggttgtga aaggagatca gattagactg ttcagctcac      1620
     aaatgttgga cctacctgaa gttgatcagt taccaccatc aaaaataaag atgagtgtta      1680
     gtgaagatgt ggttattccg cctaacaata ttggacatgt aaagtttagt accgcaagtg      1740
     actataatgg tgatttattt atagacttcc acgcacgaca aaagccacgt aatgaatacg      1800
     tagtgccgcg atgtgtcgcc tcgactacag ctggtatttt gcccatatta aatatatcca      1860
     acaacccttt gcagtttaag gtgatggata cgatagcaag aggacttcca tgtgttcctg      1920
     agacctcacc caaaggggta agtgttctaa aagttaatgt aaaattatct aagccactat      1980
     taatgtctga catcaattgt gatcttacct tgaacgaaac agagaagaaa cgtcttctcg      2040
     accttcttaa taaatatcgc gattgttttg cccaagacat aagtgaattg ggttgtatac      2100
     ataataacaa aatggaaatc actttatcag attcaaaacc tgtaacgtat aggccatatc      2160
     gtttgtcatt cttagaaagg gaaaaagtgc gcgaaataat acgagattta ttagataacc      2220
     atataatcca agaatcattt tccccatatg ctagtcccat tattttagta aagaagaaaa      2280
     caggtgaaac aagaatgtgc gtagactata gggcattaaa tgcgaaaaca atcaaggact      2340
     gttacccctt accaagaatc gaggactgtc tggaacgttt aaagggtagc aagtatttta      2400
     caacactaga tatggcttcg gggtaccatc aaatacccat gtccaaagaa tctatcgcca      2460
     agacagcatt cgtcactcct gatggacatt acgaatacct aagaatgcct tttgggttag      2520
     ccaatgctcc tgcagtattt caacgcagta ttaaccaaat tttaggctca ttacgtttca      2580
     caactgcttt ggcttatatg gatgatattt tgttgccatc atcaaccttt gaaaagggat      2640
     atgaagcctt agaaacaata ctaaaagttt ttcaagatgc aggaattacg ctaagaccaa      2700
     ataaatgcta ttatttcaga cgaaacttag aatatttagg ccatgagatt tcttcagagg      2760
     gcataaggcc tggaaaagca aagattatag cagtagagaa attcagaaca ccgaaaaatc      2820
     ctcacgaagt acgacagttt atagggttag ctagttactt ccgaaagttt gtcaaaaatt      2880
     ttgcccaagt tgcaagacct ttaacaatgc tgacaagaaa aaatcaagag tttaaatggg      2940
     gagatgaaca acagaaatca tttcaacaac ttaaacatat tttatgtacg agaccagtat      3000
     tgactattta tgacccagaa ttagaaacag agctgcatac agatgcatca aaattgggaa      3060
     taggaggaat tcttcttcag aaacaaaaga atggaaagtt aactcctgtt caatatttca      3120
     gtcgacaaac cagcaaagaa gagcaacgat accactctta tgagctagaa acattggctg      3180
     tcgtgagttg tctacagaga ttccgaattt acttgttagg ccttgagttc aaagtaatta      3240
     ctgactgcag ttccgtgcga agtacttttt caaagaagga tttgattcct agaatagcac      3300
     gttggtggtt agttacctta gaatttaatt ttaaggttga atataggcca ggtcctcgaa      3360
     tgtcacacgt tgatgcactg agcagaaacc ctgtggaaga gccaactaat gaagaaatgg      3420
     acatcgatgt ttttacaata agcatcactg aagacgattg ggtattgtca gcacaattga      3480
     tggatactcg ttgtaaatat ttacatcaag tcttgtctga acatccaaaa gacaaggaag      3540
     aagaagccat tcataaagat tatgtgttaa agaataaccg tatatataaa atcacggatg      3600
     atggactaaa atggatggtc ccgaaaaatg cacgacatgc cgttactgct tatcatcatg      3660
     acatggctgg acactttgct ttggacaaaa cgttgtcact agtatcacaa tactactggt      3720
     ttcctctgat gaggaaatac attaagcaat acatacacac ttgtcttatg tgcgcataca      3780
     ataaagaacc tgcaggtaaa cgacctggtt tgttacaccc tatagagaaa gttgctacac      3840
     ctatggacac agtacatatt gatcatcttg ggccatttgt aaagagcaca aaaggaaata      3900
     tgtatctcat agtagctgtt gacagtttta ccaaatacct atttgccaaa gctgttacta      3960
     gtaccaaagt gggacctttg atcaaattta ttgacgaaat tacagaagtc ttcggaacac      4020
     cacgaagaat aataagtgac cagggtacat gttatacgag taaaattttc aaagattaca      4080
     cggctaaatt aaatatcaaa cacatacaga atgccaccgc aacacctcgt agtaacggac      4140
     aagtggagag gtacaataga actttactaa ctggattaag cactacgacc gatgacgaag      4200
     caaaatggga ccaaaattta tcacgaatta aatttggaat caattcctct gtatgcaagg      4260
     gtacaggaaa aactccacat gaacttatgt tcggatatcg tccaagagga ccaaacgact      4320
     cctttttgtc ttcccttgtg ggaacttcaa tatataagaa cactttgtca gaacgtagag      4380
     accaagctaa gtgtcatatt gaaaagactc aagctttaca aaaagaaaga tatgacttaa      4440
     gacgactagc aaatgtaaac tacaaagttg gagaccaagt tctgattaaa agaaatgtgg      4500
     gcataaatga cggaaaaagt aaaaagcttc tgcctaaata tgctggacca tacattatta      4560
     ctgctgtatt agacaatgac cgatatgtag tcaaagattt gcctgggtca gagagaagtc      4620
     aaaagaagta cgaaggcata tgtgctatag ataaacttaa gccgtttaat attagatgtg      4680
     acagtgattc tgatgtgtcc caagaggaaa acgttcctca ggagcaacac gttgstcgta      4740
     gggaaaacgt ttccctggag gaagacgttc ctcaggagca atacgttgct cgtagggaaa      4800
     acgtttccct ggaggaaaac gttcctcagg agcaacacgt tgctcgtagg gaaaacgttt      4860
     ccctggagga agacgttcct caggagcaat acgttgctcg tagggaaaac gtttccctgg      4920
     aggaagacgt tcctcaggag caatacgttg ctcgtaggga aaacgtttcc ctggaggaag      4980
     acgttcctca ggagcaatac gttgctcgta gggaaaacgt ttccctggag gaagacgttc      5040
     ctcaggagca atacgttgct cgtagggaaa acgtttccct ggaggaagac gttcctcagg      5100
     agcaatacgt tgctcgtagg gaaaacgttt ccctagagga agacgttcct caggagcaat      5160
     acgttgctcg tagggaaaac gtttccctag aggaagacgt tcctcaggag caatacgttg      5220
     ctcgtaggga aaacgtttcc ctagaggaag acgttcctca ggagcaatac gttgctcgta      5280
     gggaaaacgt ttccctggag gaagacgttc ctcaggagca atacgttgct cgtagggaaa      5340
     acgtttccct ggaggaaaac gttcctcagg agcaacacgt tgctcgtagg gaaaacgttt      5400
     ccctagagga agacgttcct caggagcaat acgttgctcg taggaaaaac gttttcctgg      5460
     aggaagacgt tcctcaggag caatacgttg ctcgtaggga aaacgtttcc ctagaggaag      5520
     acgttcctca ggagcaatac gttgctcgta gggaaaacgt ttccctagag gaagacgttc      5580
     ctcgaacgca gaacgctgcg gtagatttaa ggcaaataat aacacgtaga aaaatggctg      5640
     ccaggaagct gaagtagggc ttggttctac tggctgattg ttggctaatt tttcttggtg      5700
     ttatttattt ggaaacttat agctttaaat ttatatttgg tttttgtcag ttacaggttc      5760
     acgaggacga tgaacagggt agctgtggcc gac                                   5793
//
ID   Gypsy-33_SiOr-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-338
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 401-401 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 338 BP; 122 A; 31 C; 77 G; 108 T; 0 other;
     tgtaagaaac agacgaaggc cgatgacgat atattaggat attaaggaac gagctgaggt        60
     tgcaagaccc acggtcttgt tttcggagcg gcatgaaata tgagtagact ttaagtttaa       120
     ctgaaagtgt tgttttaaaa aaaagtaata acttagatta gaaagagctc tttattatat       180
     gtagatagag agttaaaaga aatattgaaa tgaaaaagaa aaataaggat agtcttagtt       240
     gagtcttagc aagatctgta tcgtcatcgg atcgtgttaa aaatataatt ggttttaaaa       300
     gtggtcgttt gaagttttat tggagtgttt ttctatta                               338
//
ID   Gypsy-33_SpEx-I repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4561
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4102-4102 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..4194
FT                 /product="Gypsy-33_SpEx-I_1p"
FT                 /translation="MMARRRSKSQSRDDEDGGVLDRPTRTGTTFHYAEDVI
FT                 RKFNGRDNAYPVTKWIQDIDDNGDIFEWTQTQRLLVARRSLTGTAALWLSS
FT                 EKAFKCWESLKLAISKEFPDAIDAKTIHEMMSARKKRPNESCIDYMFVMKE
FT                 LGKRGKMADYVAIKYIIDGIRDNEINKIMLYGVTTYSELKEKLKIYEMVKE
FT                 KARYIEKGKDSNIRKEEASSYRCYDCGEKNHRSENCPHKTQGKKCFRCNGF
FT                 GHISPNCPLKPKPLPSSSSAAATSSGSGSSAETLRTQSKRTFVATALGGAA
FT                 IDDRVCEVGSATLAAMTIGPDHDMTDDKCHGGDVDVLDVNKPGILTKPVKS
FT                 VKLLCGNIADALIDSGSDVNLIRLDFYEEIGSPVFNSECVITLTGLGLSKI
FT                 TPIGQFQTNIEIDGYTYRDVVFYVIPRDTIPFKVLIGHEFLRNVITVMKGG
FT                 SVWMKPNDWLRGVDCCACSVDFVGHVMDQDVREEVAKLVDSYKPQQTKEAP
FT                 IELKIILKDDIPVAQRPRRIAPREQAEVDKQIKEWLDKGIIRVSFSEYASP
FT                 LVLVRKKDGNLRVCVDYRLINRKMVKDEYPLPIIEEHIDKLAAARVFSALD
FT                 LKNGFFHLRVSEESIKYTSFVTMTGQYEFLRAPFGLSICPKVFTRFISIIF
FT                 RDLITRGVVIIFIDDILIPALTESQAVERLREVLQVAMEYGLEINWSKSQL
FT                 LVRKVEYLGHVIEGGAVMPSPGKTEAVLKFPEPRNEKQLLSFLGLCSYFRK
FT                 YIQNFATIAKPLTDLLRKDRKFEFHEEHSLAFNILKDKLASKPVLKIYDAK
FT                 APTELHTDASCVAYAAILLQKDDKGDLHPVYYMSRRTTDAESRYTSYELEA
FT                 LAIIEGIKKFRHYLFGNHFKIVTDCKAFQMTLNKKDLATSPRVARWIIFLQ
FT                 DYDFTIEHREGSRMKHTDALSRNPFVAPIFSDLHSSLRRAQETDNGLKAIK
FT                 NILEEEKPYKDFYLQDGLLCKGNERCLVIPQKMEVEIIKRAHDNGHFSKKK
FT                 TIELISKDYFITHLDKKVEEYISTCIPCLLASRKEGKQEGFLNPIEKGDTP
FT                 LHTLHIDHIGPLTETRKQYNYILTVIDGFTKFVWLFPTKSTTTQEVLKKLE
FT                 IHQQVFGNPARIVSDRGTAFTSNDFIEYCKQEGIEHVKITTGVPRGNGQVE
FT                 RVHRTVIGVLTKLTLEQPTLWYKLVSRVQRALNSTYHRSINNTPFQLLFGT
FT                 KMRRKEDVEILDLLRQEERDSFIEDREELRKSAKQQILKIQEENKRNYNKK
FT                 RKQSRKYKEGELVAVKRTQFGTGLKLKPKFLGPYKVVKVKRNDRYDLDKAD
FT                 SQAEGPHRTTASADHMKPWPDYMSDTE"
XX
SQ   Sequence 4561 BP; 1511 A; 769 C; 1090 G; 1191 T; 0 other;
     atttttgggg gctcgtccgg gatacgcgaa atcagcgaac ggcggcgtgc cggaacacgt        60
     gcccgtttga aaaaaaaaga agatcagtta caggacagcg cgagtgcggc agcctggcgc       120
     ctgcggtagt gaccgtggaa aagtatacgt tgctggcggt acgattttac gacggttatg       180
     atggctagaa gacgaagtaa gagtcaatcg cgtgacgacg aagatggcgg cgtactcgac       240
     cggccaacgc gtactggtac tacgtttcac tacgcagaag atgtcataag gaagttcaac       300
     ggcagggaca atgcatatcc tgtaacaaag tggattcaag atatagacga caatggtgat       360
     atttttgaat ggacgcagac acaaagactg ttggtggcgc ggcgttcact gacggggaca       420
     gcggctttat ggttgagctc tgaaaaagca ttcaagtgct gggaatcgct taagctagcg       480
     atctcaaaag aatttccaga tgcgatcgat gcaaaaacta tccacgagat gatgagtgct       540
     agaaagaaga ggccaaatga gtcatgcatt gactatatgt tcgtcatgaa ggagcttgga       600
     aaaagaggaa agatggcgga ctacgtggcc atcaaataca ttatcgatgg tatacgagac       660
     aacgaaatta ataaaataat gctgtatggc gttaccacat actcagaatt gaaagagaag       720
     ctaaaaatat atgagatggt caaagagaag gcccgttata tagaaaaggg aaaagacagt       780
     aacattcgca aggaggaggc ttcgtcatac aggtgctacg actgtggaga gaaaaaccac       840
     aggagcgaaa attgtccgca caaaacccaa gggaaaaagt gtttccgatg caacgggttt       900
     ggacatattt ctccaaattg cccattgaag ccaaaaccgt tgccatcatc atcatcggcg       960
     gcggcaacat cttccggttc cggcagcagt gcggaaacat tacgaacaca gtcgaagcgg      1020
     acattcgtcg ctacggcgct agggggcgca gcgatcgacg accgagtttg cgaggttggc      1080
     agcgctacac ttgcggcaat gacgattggc ccagatcatg acatgacgga tgacaagtgt      1140
     catggcggcg atgttgacgt tctagatgta aacaaacccg gaattctcac aaaaccagta      1200
     aagagtgtaa agttattgtg tggaaacata gcagatgcgt taatagattc aggaagcgac      1260
     gtaaacttaa ttagattgga cttttatgaa gaaataggtt ctcccgtgtt taatagtgaa      1320
     tgtgtaataa ctcttaccgg attaggactt tctaaaataa caccaattgg acaattccag      1380
     acaaatattg agatcgatgg gtatacgtat cgtgatgtcg tattctacgt tattcctaga      1440
     gacactattc cattcaaagt gttaattggt cacgaatttc tacgaaatgt cataacggtt      1500
     atgaaaggtg gatctgtatg gatgaaacca aatgattggt tgcgtggtgt ggattgttgt      1560
     gcgtgttctg ttgattttgt aggtcatgtg atggaccagg acgtgagaga agaagtagca      1620
     aagttagtag attcatataa gccacagcaa actaaggagg cacccattga attgaagatc      1680
     atattgaagg atgacatacc ggtggctcaa cgtcctcggc gcatcgcacc cagagaacag      1740
     gcagaggtag acaaacaaat caaagaatgg ttggataagg gaattattcg ggtaagtttc      1800
     tccgaatatg caagcccact tgtcttagta aggaagaaag atggtaattt gcgagtatgt      1860
     gttgattata ggttgattaa caggaagatg gttaaagatg aatatccgct accaatcata      1920
     gaagaacaca ttgataagct ggctgctgca agggtgttta gtgccctaga cctcaaaaat      1980
     ggatttttcc atttgagagt tagcgaagaa tctataaaat atacttcctt tgttactatg      2040
     acgggtcagt acgaatttct aagagctccg tttggcctat ctatctgtcc caaagttttc      2100
     acccgtttta tctcaataat atttagagac cttattacta gaggtgttgt tataatattt      2160
     atagatgata tattaattcc agctttaaca gagtcacaag ccgttgagag gttgagagaa      2220
     gtgttgcaag ttgctatgga gtatggcctg gaaataaatt ggtcgaagtc tcagctgttg      2280
     gtgcgaaaag tggagtatct tggacatgta attgaaggtg gagcagttat gccatcgcca      2340
     ggaaagaccg aggcggtcct aaaatttcct gagcccagga atgagaagca actgctcagt      2400
     ttcttgggac tttgttcata ttttaggaaa tacatccaaa actttgcaac tatagcgaag      2460
     cctctcacag atttgttaag aaaggacagg aaatttgagt ttcacgaaga acatagtttg      2520
     gcattcaata tactaaagga taagttggca agtaaacctg ttttaaagat ttatgatgca      2580
     aaagcaccca ctgagctgca tactgacgca tcttgtgtgg catatgcggc tatactacta      2640
     cagaaagatg ataaaggtga tcttcatcca gtatattaca tgagcaggcg aactactgat      2700
     gctgaaagca gatacacaag ctacgagtta gaagccttgg ctatcattga aggaattaaa      2760
     aagtttagac actatctttt tggaaatcat tttaaaatag taactgactg caaagcattt      2820
     cagatgacat taaataaaaa ggatctggcc acatcaccta gggtagcaag atggattata      2880
     tttctgcaag attatgattt tactattgag catcgtgagg gatcgagaat gaaacataca      2940
     gatgcactga gccgaaaccc atttgtcgca cccatatttt cagacttgca tagttctctg      3000
     agacgtgctc aagagactga caatggactc aaggccatta agaatatact ggaagaagaa      3060
     aaaccatata aggattttta tttgcaggat ggattgttat gtaaaggaaa cgaaagatgc      3120
     ttagttatcc cacaaaagat ggaggtggaa attatcaaga gagcacatga taacggtcat      3180
     ttctcaaaga agaaaactat tgaattgata agtaaagact atttcataac ccacttggat      3240
     aagaaagttg aagaatatat atctacttgt attccatgtc tgcttgcttc acgaaaggaa      3300
     ggtaaacaag aaggattttt gaaccccata gaaaagggtg atacaccgct acacacactg      3360
     cacattgatc atattggacc acttaccgaa actcgcaaac aatataacta tatactcaca      3420
     gttattgatg gcttcactaa gtttgtgtgg ttgtttccga caaagagtac aactactcaa      3480
     gaagtattga agaagctgga aatacatcaa caggtgtttg gtaaccctgc aagaattgtc      3540
     tctgacagag gtactgcctt tacaagcaat gatttcattg agtattgtaa gcaagaggga      3600
     atagagcatg taaaaataac cactggggtt ccaagaggaa atggccaagt tgagagagtg      3660
     catcggacag tcatcggggt cttgacaaaa ctaacactgg agcaacctac actgtggtat      3720
     aagttggtga gtagggtgca aagagcactc aacagcacgt atcatagaag tatcaataat      3780
     acacctttcc aattgctttt tggaacgaag atgagaagga aggaagatgt tgaaatatta      3840
     gacttattaa gacaagaaga aagggacagc ttcattgagg atagggaaga attaagaaag      3900
     agtgcaaagc aacagatttt aaaaattcaa gaggagaaca aaagaaacta taataagaag      3960
     agaaagcaaa gcaggaagta taaagaaggt gaacttgttg ctgtgaagag aacccaattt      4020
     ggaacaggcc ttaaactcaa gccgaagttt ttgggaccct acaaagtggt gaaggtaaag      4080
     agaaatgata ggtatgattt agataaggct gactcacaag cggaaggtcc tcacagaact      4140
     acagcgtcag cagaccatat gaagccatgg cctgactata tgagtgatac agagtgaaca      4200
     tttttacaca tgttatactt accttgattt gatggtgtgg aaggatgaat gatgtttagc      4260
     cgtaatgtac tgtttttatg tgtacttagc atattgctga ttattcagta tggttggtta      4320
     gtgtaaacaa cattgtatta gtaattattg taatctgcta actgttagag atgagttatg      4380
     gttgtaacca tggcattgtt ttatgggttc tgttaccaaa gttcttaagc atttttcata      4440
     ataatatttt aactgttttc aagcatttat cataagatct gaagtatgtc actataatta      4500
     acattaaaga tttaggtttg tatgtttagt ctgaggacag actaagatca ggacggccga      4560
     a                                                                      4561
//
ID   Gypsy-33_SpEx-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-262
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4162-4162 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 262 BP; 85 A; 40 C; 68 G; 69 T; 0 other;
     tgtgggaatg ggatgtatcc aaacgtgtga tagattgaac taaagtgttt tagacgtgta        60
     tccgaacggc gcgagtgaga tgatgaacgg gacagcgaga aagagaacga atgaaagcga       120
     aacagacgaa agacgtgacg gacggaagac gaggtgtgaa ctgctacgat tttgtttttt       180
     ttcattttga ttttaaaagc tgtataatat aataaaagtc aagaatattt cctggccgtt       240
     tcgctgtttc caacacccta ca                                                262
//
ID   Gypsy-33_TrNi-I repbase;    DNA;    INV; 4313 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4313
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 236-236 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..4225
FT                 /product="Gypsy-33_TrNi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MKIGKIAEFDVNKDDWRLYIERLEQYYLVNEVKSELY
FT                 VPTLITLMGAESYELLVNLCTPDKPKTKTFSQIVEIMEKHLQPKPSELAER
FT                 YKFRKRIQQSGETIAEYIAILKKMSKSCEFGSWLQESLRDQLVCGICSETI
FT                 RQRLFAEPKLDFAKAYSLAISLESAEKDAASVVQGHGRSSGDSSTMDCHAI
FT                 EGTQWRRRGAAGAAGGKKEARDVNGTAREAGPRDNRQRQRARSPATSMLAH
FT                 GAQARAQAARQQKCRACGGTHAASTCRFASYVCRVCNRTGHLRRMCPNVLG
FT                 QYWVEATAADSIIESESDHSEEVIDINFNLLNLSQCKPFMITLIVHNEELS
FT                 MECDTGSAVSCISYNMYRKLFSSLSINKCNIVLRYYTGESVHPVGVITPRV
FT                 LYKNKVKVLDLFVIKNGKTALLGRQWITELGIQLPTVEPACVNKILDEEFS
FT                 LDAFSSRYCNVFAEGLGRFTGPPVSIHVREGARPVFMRARPLAYALREPVE
FT                 RALQQHVRDGILTPVERSDWATPIVPVVKKDGNIRICADYKLTLNKVLEVD
FT                 RYPLPRVEDLLVRLHGGKRFSKVDLSQAYAQFLLDDSKKYTVINTHKGLFM
FT                 YNRLVYGLSSSPGIFQRRLEELFADLPRVGVFLDDVIITGSSKSDHLQNLH
FT                 KVFQRLDKYGLKVKKEKCEFFMKSISYLGYVISEDGVHTCPNKVKAILDTP
FT                 APVNVVELRSFIGMIMYYSKFIKNLSTMLAPLYKLLKVGSKYDWSSQCHSA
FT                 FQEVKKVLASSEVLMHYSAELPLVLTADASGVGVGAVLSQVTAAGERPVAY
FT                 ASRSLTSAERNYSQIDREALAIIYGIRKYHQYLYGRKFILRTDHKPLTYIF
FT                 GDKVGIPVMSASRLQRWAVLLSGYNYDIEYVSSKKNCADALSRLPSKVTND
FT                 SAVKEVTYVNFVENFLPITNYDVSKATFKDVTLSKIKVYIESGWPHFCNDD
FT                 DLKPFFIRRNELYIEGGCIMWGYRMIIPQSLRQIILKQLHSSHMGIVKTKS
FT                 WARSYVWWPRIDDDVETMCRSCETCALEADAPPHSVPQHWPYLPQPWTRLH
FT                 IDFLGPLKGKTFLILVDSTSKWLEAFETKHTNASAIIKILRTTFARFGLPA
FT                 ELVSDQGPPFTSREFSEFLKLNGIKQSFSPVYHPSSNGAAENAVKLCKRAI
FT                 KKAHRDKVDIDAALQTFLLTYRNTIHSTTGETPAMILQKRRLRSRFDLLRN
FT                 DRAVIDRIRVAQDRQAQNAGGVRRLFEQGDMVWARGYGQQDKWVKGQVHGR
FT                 EGSRRYIVEGDGGQFIKRHVDQIRHRSRFSDVTCPDIGPGDSAASVGENAM
FT                 SSLGDEVVDESRDDFSQQHKEPVDFPLQAKDNGIEPLVRDDSANNKSPTLC
FT                 SPLPGASELRPKRERKPVVRYGFEFD"
XX
SQ   Sequence 4313 BP; 1251 A; 797 C; 1108 G; 1157 T; 0 other;
     gtggcgacga ggattaaacc gacattttaa agcgtacatg tttagtgttt aatatacaat        60
     gaagataggt aaaatagcgg aattcgatgt caataaggac gattggcggt tatacatcga       120
     acgtttggaa cagtattacc tagtgaacga ggtgaaaagt gagctatatg tgccaacatt       180
     aataacactc atgggggcgg aaagttatga acttttagtt aacctatgta cgccagataa       240
     gccaaaaact aaaacgtttt cgcaaatcgt ggagataatg gagaaacatc tacagcccaa       300
     gcccagtgag ctcgctgaga gatataaatt tagaaaaagg attcagcaaa gcggtgaaac       360
     tattgcagaa tatatagcta tattgaaaaa aatgtccaaa tcgtgcgaat ttggcagttg       420
     gctgcaagaa agtctacggg accagttggt gtgcggaatt tgcagtgaga cgattcgcca       480
     acggttattc gccgaaccca aattagattt cgcaaaggca tatagtttgg caattagctt       540
     ggaatcagca gaaaaagatg cggcgagcgt agttcaaggg cacggaaggt caagcggtga       600
     ctcgtcaacg atggactgtc acgcgataga ggggacacaa tggcgccgga ggggcgcggc       660
     gggtgcagcg ggcgggaaga aagaggcgcg agatgtgaat ggtacggcgc gggaggccgg       720
     accgcgcgac aaccgccaac gccagcgcgc acgaagcccg gcgacgtcga tgctcgcgca       780
     tggagcgcaa gcgcgggcgc aggctgcgcg ccagcaaaaa tgtcgagcgt gcggcggaac       840
     gcatgctgcg tctacgtgta gattcgcaag ttatgtatgt cgcgtttgta acaggacagg       900
     gcatcttcgg cggatgtgcc cgaacgtatt gggccaatac tgggtggaag ctacagcggc       960
     cgacagtata atagaaagtg aaagtgatca cagcgaggag gtaatagaca ttaattttaa      1020
     tcttttaaat ttaagccagt gtaaaccgtt tatgattact ttaatagtac acaatgaaga      1080
     attaagtatg gaatgcgata caggcagtgc ggtatcgtgc attagttata atatgtatcg      1140
     gaaattattt agtagtttat cgattaataa atgtaatatt gtcctacgat attatactgg      1200
     cgagtcagtg catccagtcg gcgttataac gcctcgagtt ttatacaaaa ataaagtgaa      1260
     ggtcttggat ttatttgtaa ttaaaaacgg gaaaacggct ttgctcggta gacaatggat      1320
     aacggaatta ggtattcagt tgccgactgt tgaaccggcc tgtgtaaata aaatattaga      1380
     cgaggagttc agtttagatg cattcagttc cagatattgt aatgtgtttg cggagggact      1440
     gggccgattc accggcccgc cggtcagcat acatgtacgg gagggggcgc gcccggtgtt      1500
     tatgcgcgcg cgcccactgg cgtatgcact gcgcgagccg gtggagcggg ccctgcaaca      1560
     gcatgtgcgg gatggcatcc tcacccccgt ggagcgctcc gactgggcta cgccgattgt      1620
     accagtggtc aagaaggacg gtaacattag aatttgtgca gattataaat tgacgttaaa      1680
     taaagtttta gaagttgatc gctatccact tccacgagtg gaagacttgt tagttcgctt      1740
     gcacgggggc aaaagattta gtaaggttga tttatcccag gcttatgccc aatttttatt      1800
     agatgattcc aagaagtata cggttattaa tacgcataag ggtttattca tgtataatcg      1860
     tttggtgtac ggactatcgt cgagcccggg aatttttcaa cgtcgtttag aagaattatt      1920
     tgctgattta ccacgcgtgg gggtgttttt agatgacgta atcataacag gttcatcaaa      1980
     aagtgatcat ttacagaact tacacaaagt ctttcaacgt ttggataaat atgggttaaa      2040
     agtaaaaaaa gaaaagtgtg aatttttcat gaaatccatt agttatttag gatatgtgat      2100
     tagtgaggat ggagtccata cttgtcccaa taaagtaaaa gctattttag atacacctgc      2160
     gcccgtgaat gtagtagaat tacgatcgtt tataggcatg attatgtact actcgaagtt      2220
     cattaaaaat ttaagtacaa tgctcgctcc gttatacaag ctattaaagg tgggatcgaa      2280
     atatgattgg agtagccaat gtcacagtgc attccaagaa gtaaagaagg tgctggcgag      2340
     cagtgaagtc ttgatgcact actcggccga gttaccgtta gtgttgacgg cagacgctag      2400
     cggtgtgggg gtgggcgccg tgctgtcgca agtgacggcg gccggcgagc ggcccgtcgc      2460
     atacgcctcg cgctcgctta catcggctga acgtaattat tctcaaattg atagggaggc      2520
     gttagctatt atttacggaa tacgcaaata tcaccagtac ttgtacggaa ggaagtttat      2580
     actgagaacg gatcataaac ccctaacata tatatttggt gacaaagttg gtataccagt      2640
     tatgtcagcc tctagattgc aacgttgggc cgttctgtta tcggggtaca attatgatat      2700
     tgaatacgtg tcgtccaaaa agaattgcgc cgacgcatta tcgcgcttgc cgtctaaagt      2760
     tactaacgat agcgcagtta aagaagtaac gtatgtcaat tttgttgaga actttttacc      2820
     gataacaaac tatgacgtca gcaaggccac ctttaaggat gtaacattaa gtaaaattaa      2880
     ggtttatata gaatctggct ggccacattt ttgtaacgat gatgatctca aaccattttt      2940
     catcaggcga aatgaattat atattgaagg cggctgtatt atgtggggct atcgcatgat      3000
     tatacctcag tctttgagac aaataatatt gaaacagttg cacagtagtc atatgggtat      3060
     agttaagacg aagagctggg ccaggagtta tgtatggtgg ccgcgcattg atgacgatgt      3120
     ggagactatg tgtcgtagct gtgagacgtg tgcgctggag gcggatgcgc cgcctcactc      3180
     cgtacctcaa cattggcctt atttacctca accgtggaca cggttacaca tagattttct      3240
     agggccttta aagggtaaaa cctttctaat attagtggat tcgacatcta aatggcttga      3300
     ggcttttgaa acaaaacaca ccaatgcgtc agctattata aaaatccttc gaacaacttt      3360
     tgcacgattc ggtcttcctg cggaactagt ttcggatcaa ggtccgccgt tcaccagtag      3420
     agaattttct gagtttctaa aacttaatgg aattaagcaa tctttttcgc cagtttacca      3480
     tccatcttct aatggtgctg cggaaaacgc cgtcaagtta tgtaagcgtg ctattaaaaa      3540
     agcgcatagg gataaagtcg atatagacgc cgcattacaa acttttcttc ttacttacag      3600
     gaatactatc catagcacta caggggagac ccctgcaatg atattacaaa aacgtagatt      3660
     acgttcacgt tttgatttat taagaaacga tcgagctgta atagatagaa tacgcgttgc      3720
     acaggatagg caggctcaaa acgcgggtgg cgtaagacgc ctctttgaac aaggagatat      3780
     ggtttgggca aggggctatg gtcagcaaga taagtgggtt aaaggtcagg tccatggcag      3840
     ggaaggttct cgaaggtata tcgtggaggg ggatggcggt caatttataa agcggcatgt      3900
     ggatcaaata cgtcataggt cacgtttttc tgatgttact tgtcctgata ttgggcctgg      3960
     tgactcggcg gcgagtgtgg gtgaaaatgc catgtcatcg ctgggggatg aggtggtgga      4020
     tgagagtaga gatgacttta gccaacaaca taaagaaccg gttgactttc cacttcaggc      4080
     taaagataat ggcatcgaac ctttagtgcg cgacgatagc gccaataaca agtctcctac      4140
     tctctgttca ccacttccag gagcgtctga attacggcca aaacgagagc gcaaaccagt      4200
     agtcagatat ggtttcgaat ttgattaggt ttgaactcta gaattttttt attgttattt      4260
     atttcattat ttttgttatt ttacttaatt aagcttaaat ttaatggtgg agg             4313
//
ID   Gypsy-33_TrNi-LTR repbase;    DNA;    INV; 125 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-125
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 190-190 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 125 BP; 30 A; 20 C; 30 G; 45 T; 0 other;
     tgtaatgtag ggtatatcta gataatgttg tgtgcgtgat ttgtattgtg agtgaagtca        60
     gtttgaatat acgcagtgtg ccgctaagac gttgtttaca tttatacccc ccccgctata       120
     gttca                                                                   125
//
ID   Gypsy-33_TrVa-I repbase;    DNA;    INV; 4756 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4756
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 278-278 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..4650
FT                 /product="Gypsy-33_TrVa-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MNETQFQTFMNAVTASLNKIQVQQPAAQHVPVPVIVN
FT                 FEPFNKNVEKFSQYRERFENFTKLRNIDNDEALKKTTFLNCAGSDTYEIIK
FT                 SISAPLKLEDLTYKQIVELLEKYLSPKPNILIEQHRFLSRIQSTNETIGDY
FT                 VTALKKFLPNCAFSCECGKSTANSFLRAQFIRGIHSPHIREILLAEPNLDF
FT                 DMAVSKALSLEASSLNNLEIKASNSSNVKPNQTDENVNKVSYSYRSRSKSR
FT                 SNFNSSKKRPQSHQRSNRYRSRSKVDYVRLGIADLCHRCGRNDHRQNDCKT
FT                 DRYKLQCTSCQRRGHIAKVCISTLLRQNNTRNVKSLTCDVELEDFNPTLDL
FT                 YHISGNPYLVNFPSSKVIDSVNCLSNNHDLSEKYHATVLIEGKPAKFEVDS
FT                 GCPFTLMPETDFNSLNLSTKLSPTAYRFKTYDGGIVKPLGALKVSVAFKNK
FT                 FSTETLFVVPSQHTAVLGRIWIRRLEIKLEELGKSPEIHSVEDVSTESIIS
FT                 QFPSIFEQSVGCIPNVKCSLQLRSNAKPVFLKARDIPLALREAVENELKDL
FT                 EKDGVITPVEKCDWGSPIVPVPKPNGKIRLCVDYKPSVNPLLVDSHCPIPK
FT                 IDELLSDLCEAKYFCKLDLYKAYHHIEMNEESRHVQAISTHLGTYLVNRLS
FT                 QGIKTAPSQYHNIFAPILRKLPGVKSYFDDIIIYGKTLAECKNNLLSCLRK
FT                 LEENNLHVNLPKCLFFKTRIKFLGFIIENGKIYKDPSKVKAITNAPRPKTY
FT                 SDVKQFLGLITYYSKFIPNASSITYPIRQLLVKSTPFRWTADCEAAFLKLK
FT                 SIITSDQVLVAYNPSLPVSVACDASPTGIGGVLSHTINGEEKPVAFVSRSL
FT                 TPAESNYSQIDREALAIVFAVDKFFMYLYGRKFDLITDNKPLTRIFHQHSK
FT                 LPPMTAARLLRYAAYLSTFNYEVKHRPNEFHTNVDYLSRFSIPDVNPQGNQ
FT                 ILLDLETTACHEHSLNQISSPEVTSNDIADQTLLDPQLSQILAELRQGSDN
FT                 LEYTLQGNIIFRGNQVVIPAKLRPKILSELHQTHLGITKMKQLARRYCYWP
FT                 SINTDIERLVRSCEPCNLAQKSPQKVPVHKWEIPESNFERVHIDYAGPYLE
FT                 HNFLIVVDAKSKWPEIKIIKSAPTAMTNIELLEDIFTSHGYPKNIVSDNAR
FT                 IFTGEEFTTYCKTRGIFQSFTAPGHPATNGLAERYVQILKAKLSKMKSEPG
FT                 TLKDKVRRILLQFRATPLANGSSPAENYLNRQIRIRLDAIRPSKPPANPKS
FT                 FHPVRSFAIGQKVIARVYKVNKPTWQFGVVERKLGRLHYVIKLNNGYVFKR
FT                 HVDQLRAVQKEDNPSPSKFEEQPTPNSSQNSSQQPSAKKKVSFSDSICAYD
FT                 FQQPXPXISEPDQSNLPVAESSQPRSPVAGPSQPRSLFPVAENSQSKPSQS
FT                 KSPVREPEVIDLSPDQHVSKSGLSQFRNQALQQSQSLARGKMRDSPDSQLQ
FT                 SARGRGRPVSTRPASTQISTSASSVSNPISTAAFPLSSQTPSSERQPRIRR
FT                 PPDHLKDYVRK"
XX
SQ   Sequence 4756 BP; 1496 A; 1072 C; 806 G; 1380 T; 2 other;
     attggcgacg agaataaaag tcggtaatta tttagtaatc gtgtcctttc gcgtcgtttc        60
     ttcgcgaaaa tgaacgaaac ccagttccaa acgttcatga acgcggttac cgcatccttg       120
     aacaaaatcc aagttcaaca gccagcagct cagcacgtgc cagttccagt gatcgtcaat       180
     ttcgagccat tcaataaaaa tgtggaaaaa ttttctcagt accgcgaacg atttgagaat       240
     ttcaccaaac ttcgaaacat cgacaacgac gaagccttga aaaaaaccac ctttctcaac       300
     tgtgcaggta gtgatacata tgaaatcatc aaatccatct cagccccgtt aaagttagaa       360
     gacctcactt acaagcaaat tgtcgaactt ttggaaaagt atttaagtcc gaaacccaac       420
     atcctcattg aacagcatag gttcctatct aggattcagt caacgaatga aacaattggt       480
     gattatgtca ccgcgctcaa gaaattcctt cctaactgcg ccttcagttg tgaatgtggt       540
     aagtcaactg caaattcctt ccttcgtgct caattcatca gaggaattca cagtccccac       600
     attagggaaa tattgcttgc agaacctaat ttagattttg atatggctgt ctccaaagct       660
     ttatcacttg aagcatccag cttaaataac ctagaaatta aagcgtccaa ttcttcaaat       720
     gtcaaaccga atcaaaccga tgaaaatgtt aacaaagtgt cttatagcta taggtcaagg       780
     tcaaagtcta gatcaaattt caactctagt aagaagcgtc ctcaatctca ccaacgatcc       840
     aaccgttatc gatctcgcag caaagtagat tatgttcgcc taggaattgc tgatctctgt       900
     caccgttgtg gtcgcaatga ccatcgtcaa aatgattgta aaactgatcg ttacaaactc       960
     caatgtacat catgccagcg tagaggacat attgctaaag tgtgcatttc tacattactc      1020
     cgccagaaca atactcgtaa tgtgaaatct ttaacctgcg atgtcgaatt agaagatttc      1080
     aaccctactt tagacttgta tcatatctca ggtaatccat atcttgtcaa ttttccctct      1140
     agtaaagtta ttgattcagt aaattgtttg tcaaataacc atgatctcag tgaaaaatat      1200
     catgcgactg tattgatcga aggaaaaccc gcaaagtttg aagtcgactc tggctgtccc      1260
     tttacactca tgccagaaac tgatttcaac agtcttaatt tgtccactaa attgagtccc      1320
     actgcctata gattcaaaac ctacgatggt ggaatagtca aacccttagg tgcgctcaaa      1380
     gtaagcgttg cgttcaaaaa taaattttca acggaaaccc tgtttgttgt tccttcgcaa      1440
     catacagctg tcttaggtcg tatatggata agacgtcttg aaattaaact tgaagaacta      1500
     ggaaaaagcc cagaaattca ttccgtagaa gatgtgtcaa ccgagtcaat tatcagtcaa      1560
     tttccctcaa tttttgagca atcagttggt tgcattccaa atgtcaaatg ttcattgcaa      1620
     ttgcgcagca atgctaaacc agtttttctc aaagctcgag atataccatt agctcttcgt      1680
     gaagcagtcg aaaatgaatt aaaagatcta gaaaaagatg gtgtcataac tcccgtggaa      1740
     aaatgtgact ggggttcacc cattgtacct gttcctaaac ccaacggaaa aatccgcctc      1800
     tgtgtagatt acaagcccag tgtcaaccca ttattagtcg attctcattg tccaattcca      1860
     aaaattgatg agctactcag tgatctttgt gaagccaagt atttttgtaa attagactta      1920
     tataaagcgt atcatcacat agagatgaat gaagaaagcc gtcacgttca agcaatttca      1980
     actcatctcg gaacttatct tgtcaatcgg ttaagccaag gtattaaaac tgccccaagc      2040
     cagtaccata atatttttgc tccaatctta cgcaaattgc caggtgtcaa atcttacttc      2100
     gacgatatta ttatttatgg aaaaaccctt gccgaatgca aaaataacct cctatcatgt      2160
     cttcgaaaac ttgaggaaaa caacctacat gtcaatcttc ctaaatgtct ttttttcaaa      2220
     acccgtatca aatttctcgg atttatcatc gaaaatggaa aaatttacaa ggatccaagt      2280
     aaagtcaaag cgattacaaa tgctccccgt ccaaagactt attctgatgt taaacaattc      2340
     ttaggattaa tcacttatta ctcaaaattc atacctaatg cgtcttcgat tacctaccca      2400
     atcaggcagt tacttgtcaa atcaactccg ttccgctgga ctgctgattg cgaagcagca      2460
     ttcttaaaat tgaaatcaat cataaccagt gatcaagtac tcgttgctta caatccatcc      2520
     ttacccgtta gtgtagcatg tgatgccagc cctactggta ttggaggagt tctttctcac      2580
     acaataaatg gagaagaaaa gccagtcgcc ttcgtgtcaa gatcactcac tcctgctgaa      2640
     agtaactaca gtcaaatcga cagggaagcg cttgcgattg tgtttgctgt cgacaagttt      2700
     ttcatgtatt tgtatggtcg caaattcgat ctcatcacgg ataacaaacc attaactaga      2760
     atttttcatc aacattccaa acttccgccg atgaccgctg ccagactttt aagatacgcc      2820
     gcatatttat ctacgtttaa ttacgaagtc aaacatcgcc cgaatgagtt tcacacaaat      2880
     gtcgattatt tatctcgctt ttctattcca gatgtcaacc ctcaaggaaa tcaaattctc      2940
     ttagatcttg aaaccacagc ttgccatgaa catagtttga accaaatttc atcgcctgaa      3000
     gtcaccagca atgatattgc agatcaaacg ctcctcgacc cgcaactttc ccaaatactc      3060
     gcagaactcc gtcaaggctc agacaatctt gaatacacac tccaaggaaa tattattttt      3120
     cgaggtaatc aagttgttat tcctgctaaa ctccgtccta aaatcttgtc tgaattacac      3180
     caaactcatc ttggtattac taaaatgaaa caattagcta gacgttattg ttattggcct      3240
     tccattaata cagacatcga aagacttgtt cgttcatgtg aaccatgcaa cttagctcag      3300
     aaatctcctc agaaagtgcc agtccataaa tgggaaattc cagaaagtaa ctttgagagg      3360
     gtacacatcg attatgccgg tccttatcta gaacataatt ttttaattgt ggtcgatgcc      3420
     aagtctaaat ggcctgaaat caaaataatc aaatcagcgc caacagccat gacaaatatt      3480
     gaattactgg aagacatttt tacttcgcat ggttatccta aaaatattgt ctccgacaac      3540
     gctcgtattt ttacaggaga agagtttact acttactgca aaacccgtgg catattccag      3600
     agttttactg cgccaggcca tccagctacg aatgggttag cagagagata tgttcaaatt      3660
     ctcaaagcga aattatcaaa aatgaaaagt gagccaggaa cactcaaaga taaagttcga      3720
     cgtatacttc tacagtttag agcgactccg ttagcaaatg gttctagccc tgcggagaac      3780
     tacttaaacc gtcaaattag aattaggctt gatgctattc gtccatcaaa acctcctgca      3840
     aatccgaaat catttcatcc tgttcgatcc tttgcaattg gtcaaaaggt tatagcacgt      3900
     gtctacaaag tcaacaaacc tacgtggcaa ttcggtgtag ttgagagaaa attaggccgt      3960
     ttacactatg taatcaaact taataatggt tacgtgttca aacgtcacgt ggatcaactt      4020
     cgtgcggtgc agaaagaaga taatccatct ccgtccaagt ttgaagaaca accaacgcca      4080
     aactcaagtc agaattctag tcagcaacct tcggctaaaa agaaggtatc tttttctgat      4140
     agtatttgtg cgtatgattt tcaacaacct cawcctcama tttctgaacc tgaccagagt      4200
     aaccttccag ttgccgaatc ttctcaacct agatctccag ttgccggacc gtctcagcct      4260
     agatctcttt ttccagttgc agagaattct caatctaaac cttcacaatc taaatctcca      4320
     gttcgagagc cagaagtcat tgatctatct ccggatcaac atgtgtctaa atcaggattg      4380
     tctcaatttc gaaatcaagc cctacaacaa tctcagtctc ttgcccgtgg gaagatgcgt      4440
     gattctcctg attctcaatt acaaagtgcc cgtggaagag gacgtccagt ttctacgcgt      4500
     ccagcttcta ctcaaatttc tacttctgca tcctcagtgt ctaatccaat ttctaccgct      4560
     gcattcccat tgtctagtca aactccctca tctgagcgtc aaccaagaat aagaagacct      4620
     cctgatcatt tgaaagacta tgtacgtaag taaatattct agtcattgaa atattgtcct      4680
     ttattgtttt ttgttgttat tgttcaaatg ttccacaatt gttctcaaag aaatctcttt      4740
     cttagtgtgg gagaat                                                      4756
//
ID   Gypsy-33_TrVa-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-33_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-170
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 337-337 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 170 BP; 36 A; 39 C; 34 G; 61 T; 0 other;
     tgtagtgttt ggtatcactg cattgctaga ttgttacgta acggatatag cccgttatag        60
     gtgtcagccc tgctttggga tcagctgttc acttcttgaa taaactcttg tgttctacca       120
     tgtcaactcg cgtcggtctc ctcttaattc ttcctagtcc agatataaca                  170
//
ID   Gypsy-340_AA-I repbase;    DNA;    INV; 6412 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-340_;
KW   Gypsy-340_AA-I; Gypsy-340_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6412
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6412
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6412 BP; 1950 A; 1305 C; 1420 G; 1737 T; 0 other;
     ttttggcgac caacaaaaaa atatattcca tatttttttc gaggtaagcg agggagggaa        60
     acggtagtga taatcgttta cgccggtgat actggtaatt ggctccagtt gcggctactg       120
     ttgaataata atttgcatag caagagtgac aaaaatttat cgttctagga ttgttaacaa       180
     attacctttc gtacgatatc gcgtaacctc aaagtgaata ctaaaagata ttccgaacga       240
     aatccactgc ggcttacaat taagcaccgc atcgttgccg ttttaatcca gctatatctg       300
     aaatagcggc ttgagaaaag catctgaatt aactaggtta tcaaatttgt tgaaactttc       360
     caacacgtaa aagctctatc gagcattctt ctcctttagt ttttttttca atttatcgat       420
     ttacatttca acatggacca cttcattgat cagtactttg caatgaatgt tgctcatctg       480
     cacaatgacg agctggcaca cgagttgtat attcgcggtg tagaagtgtg taacgaacaa       540
     cgatcagttc tagaccgaaa atgtagggca gagctaaaaa gagaatcagc gtccaaatta       600
     accgatatag agtacaagca atttccgaat accatgatag aagaactgga actgtgtgac       660
     cagaaagttt gcgaaattaa acaagcggtt gaatccagag cacaaagaaa agcaccggat       720
     caaaaacaca aatctagatt gctccactac cttttcagat tgtcacgagc aaaagctttt       780
     acagatgaag aatctgagtt gaacactatc agcgaagtcg ctagcgaatg tgtgaaacta       840
     ctcaatacgt tttattcaat tgtgtctccg taccctgaga ttcgcagggc agagattgac       900
     atcgtcaata atagcttgca aaggcttcgt tactcgttcc ctgaagacaa aggtgccaaa       960
     cctaaacaga gatcagatca aatctcggat tccgaagaac aaaacgaaaa ggaagccgca      1020
     gaagatcagg cccttgatga aattggggaa ctatttaccc aaacggaaga cagtaatcaa      1080
     aatgacgaat taggagctgt cggcggtgaa cctaccgacg aggttgagat tctaaagtta      1140
     gagaattctc aactcaagtc tcttctagat cagttattga ctagaatgga gtctttagaa      1200
     acacagattc aaaaatcaag aaatagcaca actgtggaca agcatgatga ttcgccagat      1260
     tcagaaaggc tcagttccga tgaaccagcg aagaataaat gctcctacaa agatttcatg      1320
     gattggttgg taaacgatca aaattgtgta ccgaaccttc caaaaagcac tgctcgcgct      1380
     gcctcgtcaa gtgatactgt gaggttgcct gatcgcggaa attttgttcg tgatagtaac      1440
     agtcgacttc ccatccataa atggaacatt cgttacgatg gatcggacaa cggccgacac      1500
     ttgacagaat ttttacgaga aatagaattt aatgcccgat cggagggttt cactaaacat      1560
     gaactataca acgcagcgta tcacttgcta ggaggtaaag cacgatcctg gttcatggag      1620
     gtcaatgccc agaatgagct cagtacgtgg gacaatttgg tctgcgagtt gaagcgagag      1680
     tttctacctc ccgacataga ttaccagtac gaacgacaag ctcacttgcg aaagcaaggc      1740
     gcgagagagc gttttcagga ttactacctg gaaatgaccc gaattttcag gaatatgacc      1800
     actcctctcg aagacgcgag aaaattccaa attcttttcc ggaatttgcg ctccgagtac      1860
     aagagtgcca tgctggctgc aaacatcacc acaatcccca aaatgagaga gttcggaaaa      1920
     agcttcgact ctatcaattg gcaatggttc atccgaaccg agagagatgg tgggcgatct      1980
     ctgaaatctg agaggcaggt gaacgaagtg agtgagggaa agaaggtatc tgtaaataat      2040
     gagaaaccgt ggaacaaggg taataaattc aagcgtgagt tctccaactc agctaggcaa      2100
     tctgactaca aaagtaatca atccaaacca aattatgcat ctaagccaaa ttatgcttcg      2160
     ttggctaata aatcatctga tcagaaagag gagtcggccg gtaacaaacc ggattatcaa      2220
     aagccaggaa ctagtcggaa tggtaacact ctagagaaaa ttttgaaggc atatgttcca      2280
     atgaaacggg gtacttgttt caattgtcac aacttcgggc ataattttac acaatgccaa      2340
     caagaaaaac aaattttctg tgaagtatgt ggttttcccg gtttcatact aaaggattgt      2400
     ccgtattgtt tatcaaaaaa cacagacaag actgctcaat gaggcagagt agtcttgagc      2460
     cgaaaatcca aagtcctcaa aatgacgaat gttctgcaat tagttccatt cttactcagc      2520
     tcggttacca ttcggtagtt gtaaatccta agtgtgagga ggttaatact atatttctcc      2580
     acccacaagg ggataaccgg ccgtttgtaa gaatcgagat gttgggactg aaactaatag      2640
     ctcttttgga tagtggaaca aaccgcaaca tcttagggaa aggatcggaa cgtattgttg      2700
     cgagcctgaa cctttcttat gcgccatcgg atttgacttt gattacggcc gaaggtcatc      2760
     cagtgcaggt tttgggtgaa gtcgaagtac ctgttctgtt caacggagtg acaaaacttg      2820
     tatctttcgt agttgcgcct tccctaaagc gacagtgtta tttagggatg tcattctggg      2880
     atcaatttgg gatttatccc tatttgagag aatccttcat cgaaatgatc gatgactcgg      2940
     atgagctacc cgatcgagag cttttactga cacccgaaga acaacaggaa ctcgatgatg      3000
     tcaaacagct gtttttagtg cccgaacctg gtaatattgg gtgtactcag ttactctctc      3060
     atactattga aatcagagat gaatttcgtg agcagcctcc gattcgtaaa aacccttatc      3120
     catggagtcc tgaggtgcaa cgacgcatcc ataccgcgct tgataacatg atccgggacg      3180
     atatcgtcga acgatcacga tccgattggt cgcaaccggt gataccagtc gcgaagcgtg      3240
     atagcgaagc agtacgtctt tgtcttgacg cgcgaaaatt gaatgagcgc acaaagcatg      3300
     atgcttatcc gcttccacac caaactagaa ttttaagtcg tttgggatct ttcaaatacc      3360
     ttacgacaat agacctgagc caagcttttc ttcaaatccc actaagccct gcgtctcgtc      3420
     aatacactgc attttccatc cccggaaggg ggctttacca attcaaacgt ttgcctttcg      3480
     ggcttgcaaa cagcccagcc acgctcagca aactcatgga tcgggtgcta ggattcggag      3540
     agctggagcc caacatattc gtatacctag acgatattgt tgtggcatcc aaaactttca      3600
     aagaacatat cgctcacttg aaggagctag caaaacgatt aaggttggcc aatttacgga      3660
     ttaacataac aaaatccaaa ttttgcgtac atgaagtgcc ttacctgggc tatattttgt      3720
     ctagagatgg tttgaggccg aatcctgatc gcgtgcaggc gattgttgcg tatgaggtgc      3780
     cgaaatcagt tcgcgctctc cgccgattcc ttggcatggt aaattattac cgacggttta      3840
     ttgaccaatt tagcgcttta actgtaccgt tgactaattt gcttaaaaac aaaccaaaaa      3900
     aggttgattg gactcctgag gctgaacagg cattccgcgc aataaaagaa aaattaatca      3960
     gtgctcccgt tatggccaac cccgatttta acctaccttt tacggtgcag accgatgcaa      4020
     gcgaccatgc aatcgcaggg gtcttgaccc aagtacagca tggtcaagaa aaggttatag      4080
     cctatcactc cgagaaatta aaaggcgcgg aacttaatta tcacgccgct gaaaaggaag      4140
     gattagctgc tttgaggtgc atcgaaaaat ttcgttgcta tcttgaaggg actcagttca      4200
     ctctagtgac tgattcttca gcactcactt ttatcatgcg ctcaaaatgg cgtacttctt      4260
     ctcggctatc acgatggagt attgagctcc agcagtacga tatggtactc aaacatcgta      4320
     aaggccggga gaatatcgta ccagatgctc tatctaggtc gatagaagtc tcagagctcg      4380
     ttttgaatga tggttggtac gcgcggctat tggcatcggt taaaaatgac cccgaaaatc      4440
     acattgactt taaagtcgag ggcaacaacc tctacaaatt agtttcttca cagtcggatg      4500
     tgctcgacta tgcattcgac tggaaactat gcgtccctga gtcgaagcga gctgacattt      4560
     tgatcaaaga acatgataac gcttttcata tcgggtttga aaaaacgatt gacaagatta      4620
     agaaaaggta ctattggcct cgtatgtcag ccgatgtgaa gcgatacgtt tccaattgtg      4680
     aaacttgtaa gttgatcaaa ccttcaacta cgtccgttgt cccagaaatg ggcaaccaac      4740
     gcgtcactac tagaccgttc cagattctca caatggacta cattcaatct cttccgagga      4800
     gctctagggg taatgctcat ttacttgtcc tgatggatgt attttctaaa tattgcctct      4860
     tagctccagt gcggaagata tcttccagta gtctctgtga aattctggaa cagcagtggt      4920
     ttcgacgact atcagttccc caatatctca tatcggacaa cgcgactact ttccattcga      4980
     aagagtttca aaacctacta gcgaaatacg aagtccgaca ttgggctagc gctagacatc      5040
     gtagtcaagc caaccctacg gagagactga accgcacgat aaacgctatg atgcgcagct      5100
     acgtacggga gaaccaaaaa ttatgggata caaggatttc cgaagtggag ttcatcttga      5160
     acaatacggt tcatgccaca acaaaattta cacctttcaa ggtgatcttc ggtcacgaaa      5220
     tcgtgacaaa gggatccgaa catcgatttg agaatgagtg tctttcagaa gaagagagaa      5280
     tggagcgtat gaagagcatt agcaaatcgg tatttgaaac tgtgacgagc aatctcaaaa      5340
     aagctcatga gagtaccaaa cagcggtatg acctgagaca taagagatat tctccttctt      5400
     tcgatatcgg acaaagggtt tataaacgta ctttccgtca gtctgtcgct ggcgaccact      5460
     tcaatgccaa gcttggtgaa gtatatgagc cgtgcattgt gctggccaaa aaaggctcgt      5520
     gttcctatga ggtaactgac ctaaacggga agagcctggg tgttttctct gcaggcgatt      5580
     tgaaagcctg agttttaggt gtttcagtgt cgatgtaatg ttaaaaaaag tgtggagcca      5640
     atagtaagcc tctgtgatca tcgttaatcg gtttttgaag atccgtatgt gctggtagct      5700
     ccaacgaaat atgcagactg tcgatgttaa tcatggaatg cttcagagaa tgtactttgt      5760
     aaaggttagg attgctggaa atcctagaga aggttagtag aatcttcatt ttggctgcaa      5820
     tataggtacc tatagatcaa aaggttgcgt gtagctctct gtcccatttg tattttggat      5880
     cgtcaacaag cttttgatcc ttacaagtcg atcgatttgg ctacgtaagc aggaggatat      5940
     tcggattttg cgtattggtc gttcgtttca tcaaattgga taagattctg cttggaagat      6000
     gttaattgac aataatgagg atttatagga atgatcttgg ccaatcaaac taaaaatgat      6060
     actactcatt attgtcgccg cggcaagagt ttaaacagtc gtcttaagca gattcctatc      6120
     aagattggtc aaaacgatag atacgataaa taatgttccg gaacagtaaa tagatagtaa      6180
     gtttggatga atctttgtgt tcttcacttt gagaatatat atttgatact acgttcatta      6240
     aatttcaaga ttttgttaaa agttcttgaa gatttatgat tagttactat gttatacggt      6300
     gtttatccaa cttttgtcgt gaccggtaca ggtgcggtat ggcgagagtt gctatttagt      6360
     tttcctaaaa ttattaactt cgttaataat ttttacccga gcggtgcggt ag              6412
//
ID   Gypsy-340_AA-LTR repbase;    DNA;    INV; 1138 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-340_;
KW   Gypsy-340_AA-I; Gypsy-340_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1138
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1138
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 201-201 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1138 BP; 351 A; 281 C; 243 G; 263 T; 0 other;
     tgtgaccaac cactctgttt gctcactcga tttgcaaagc tcactcttat tctcaggtta        60
     aaattaaata aataagagga atatggaaaa tacaagattt agacagctag tagggactat       120
     cacatataca agttaaaatc gatataaata taaaatccta aaaatactaa atatataact       180
     taaatatatc atgcaattag aataaggcca agcgattctc agctaggaaa ctcaaggcgg       240
     caaacggtta gtttgaatac aatacacctc ataggaatta tattcagcct acccccaaaa       300
     tacacactcg caataacacc ttcacaatac tggcagtttt ggtagcagtt ttggcgttcg       360
     cctatcgggc aagctaaggg accgaaaaat gccttttcgc cggttcctgg gtggtccaac       420
     agcatcagct cggccacttg tacgagtact tcgctggaga gaacatctaa ctcaaaagca       480
     tttccaagtt ttactacaaa gtgtcgatat atacggccat caataaggcc acgttattcc       540
     gttgtcaaac ggagtcctta tatcatccac gagggcgaac cgaaatattt gccacgtcgg       600
     tgattagtgc ggtatatttc atcggcggcc atcagttgtg acagtgtaca acgaaaggac       660
     atcgcgaagt gactgtctga tgagccggta acctgaaacc gacccatagc gatacgaagc       720
     acatgtgagt gcaccccaac atcaagaacc cccccccccc actgggaaac cgaccattgc       780
     ggaaccccga aggatcgtcc aaggcgataa ccgagaaccc cccccccatt gggccaaccg       840
     gccacgagta gatcgcgagg tggcaaccag ctaccaagga ctccagcagc tgccagtttc       900
     caccgacggg cccaacactg acacccacac aaactcgtaa gtagagtgta cttggtagga       960
     cattagatag ggcagtcagg gacgttaggc caaacacgaa taaatcgccg tcgaaacatt      1020
     aatagctttt gttttctatt ttcctcttcc tttgagttta cctcggcgtg aatgagccga      1080
     ccctgagaat tgggttagag tttcgtgcat tgagcgggcg taacagggaa aagttaca        1138
//
ID   Gypsy-342_AA-I repbase;    DNA;    INV; 5304 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-342_;
KW   Gypsy-342_AA-I; Gypsy-342_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5304
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5304
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 268-268 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           758..1627
FT                 /product="Gypsy-342_AA-I_1p"
FT                 /translation="MNRVRVDYDRHPRRVNHRDEQDGGLAMRSNEVEAIIS
FT                 EFDPDTNRGQSAEEWLNEVDSMAEIFGWDPRRTLLYACMRLKGPAKFWFDG
FT                 CKQELRTWELFRMRLLENFPTVVDTAGIHKKLLNLKRKPDQSVESYFHETV
FT                 ALGRKIRLSDDLIKHYLIKGLPYASTRAVMAQDPAVTLPQFLNALIRVERA
FT                 TKDGERRDAANAGRFGMNKTIGRKSMDARKSTDNSRVDTVNQNKTPASTDP
FT                 QPGSSRKLTQTPTSQKRQCFICRSEDHLARKCPQRKDFRSEVVQNRATM"
FT   CDS           1573..4779
FT                 /product="Gypsy-342_AA-I_2p"
FT                 /translation="MSSTQGFSFRGGTEPRHHVNNVVYTKIAIIKGFQLTA
FT                 FIDLGSERTLMKEHIARTLAINVEYERSLLKGFAGGVCVTVGAVTENIEID
FT                 GIVNELRILVVPDDVMQYDILVGDDFFRKAGVSVLKTADTLTIQCEKSSIV
FT                 EKVKSGNTVRPPLAIDDLNVEPASPENVKLQLVELVNRYRNCFALDLKEIG
FT                 YTDIETMRISLKEDKVVRHVPYRVAYGQRKYLQNEIKDLLENDIIEESTSE
FT                 FASPVVIVPKRTGGHRMCVDYRMLNAIIEKEYFPSNLVEEEINNLSGKRVF
FT                 TLLDMMNGYLQIGVAEDSRKYTAFVTPDGQYQFKRVPFGLSNSVSVFCRTM
FT                 SKIIEPLKEEGISFYFDDVLIATKTEEENLALLERFLIEVSKSGMTLKVSK
FT                 CEFFKTSLEYLGHVVTEGCVCPGETKTEAVEKFPVPVDPRGVRQFLGLTGY
FT                 FRRFVQNYGQIAAPLTRLTGKVPFVWGEVEENAFQNLKFALTRRPVLALYN
FT                 PSLEHEVHCDASSFGLAGILIQVNEKHEAQPVMYFSRATTDPESRYHSYEL
FT                 EVLAVVESLKKFRYYLLNKHFTVYTDCQSLALTRAKKELNPRIARWWLTIQ
FT                 EFSFDLKFRSGRQMNHVDSLSRNVVRPTEETERVMAINVDSFDWVAALQLQ
FT                 DGKICKVKKMLEGLLTPEKDIVKNYEEVNGRIFRITPNGLKFVVPTKVRFH
FT                 VVKSLHDDMGHPGIEKTTELVNQDFWFENMNAFVRQYVKCCIECAANKRGL
FT                 DETRITIHTHLKQPIPFWVIHADYCGPFPKSKRQNTQVLGIIDAFTRFIIL
FT                 RPTKTCSTTGVISVLKEISQYFGTPKILVTDRGAAFMAKTFAEFCEERDIK
FT                 HSPVAAKTPRGNGQIERCFQYVTNALKCFSTDTDERDWDLNLPAVQWAMNT
FT                 MKNRTTGESPQLLLLGYRPRNILSNKLLNALRDESDIVEDNELLPEIRQKA
FT                 LERMTRNSKQQAERYNASHKAPQSYKEGDLVLLRYEPPADGGSRKLMPRYR
FT                 GPYVIDKVLDADRYVVKDTPATQVTQKAFESVYAADKIKLWGHPPEDDFPE
FT                 VCEEDNSEINGD"
XX
SQ   Sequence 5304 BP; 1623 A; 1002 C; 1251 G; 1428 T; 0 other;
     tttcagaagt gggattcgat tcgcacgatc attttgcgaa ttacatagga aagtgtaatt        60
     gtaagtatga tatatgttgc agaagtggaa ggtttatgac tagatcgagt ttacacgcta       120
     catattggat tacaatcggc acgccattca ttatgggatt gtattgtatg ggtaagaaaa       180
     atgtgcaaat aattgcgcat gtgttgactt ccggtgaatc tgataagaga aaattcataa       240
     actatcacat gtgttcatcg tgttttaatt gtcatttatt tgtttgttga aaagtatgtg       300
     tgtttgtgtg tgtggcggcc gcccatggat gtaatgagac tatggaggaa tgtgtgtgat       360
     gcaaaaacgt taagcgatga tgtattggtg aaatttatcg agtacgttag ttcgaaaatg       420
     caaaaagacg ccattgctaa aatatttcgt cagtcgaacg gacgcttcgc gattactgtg       480
     caaaattaaa ttgataaaaa gtagagctag caaagaatac tcttgtgtag tgaacaagat       540
     ttcttccgaa gaaaattatt gtaagtgttt tatgaattcg cctcagaaca aatcgcttaa       600
     agataaattc acttcgattg ttttagcctg tcatcggcca ttgttagcca aagcttcttg       660
     ttttctacgt atatgacaaa tcagttacag ctactggtaa gtcctgaaaa tgattttgct       720
     tggttaccgt taataatcaa ttatttaaat agtcaacatg aaccgtgtgc gtgttgatta       780
     tgatcgtcat ccgagacgag ttaaccatcg agacgaacaa gatggaggcc tcgcgatgcg       840
     ctcaaacgag gtggaggcga tcatatccga attcgatcca gacacgaatc gtggtcaatc       900
     cgcagaagag tggctcaacg aagtagattc catggcagag atcttcggat gggacccgag       960
     acggacacta ttgtatgcct gcatgcgcct caaagggcca gcaaagtttt ggtttgatgg      1020
     ctgtaagcaa gagcttcgca cttgggagct cttcagaatg aggttattgg aaaatttccc      1080
     cactgtcgtt gacacggctg gaattcacaa aaaacttctc aatttgaaac gaaagccaga      1140
     ccaatcagtg gaatcttatt ttcatgaaac agtcgccttg ggtcggaaga taagactgtc      1200
     ggatgatttg atcaaacact atttgattaa aggccttccg tatgcttcga ctcgtgccgt      1260
     catggcgcag gatccagccg ttactctgcc gcagttcctg aatgcattga tccgggtaga      1320
     acgagcgacg aaggatggag aaaggcgaga tgctgctaac gctggacgat ttgggatgaa      1380
     caagacaatc ggtcgaaaat caatggacgc cagaaaatct acagataaca gtcgtgttga      1440
     cactgttaac caaaacaaga ctccagccag cactgatccg cagccaggtt cgtcgaggaa      1500
     gctgacacaa actccgacaa gtcagaaaag acagtgcttt atttgccgat ctgaggacca      1560
     tctcgcgcgc aaatgtcctc aacgcaagga ttttcgttcc gaggtggtac agaaccgcgc      1620
     caccatgtaa acaatgtggt ttacacaaaa atcgctatca tcaaaggatt tcagcttact      1680
     gccttcattg acttaggtag tgagagaacg cttatgaaag aacatattgc gaggacactg      1740
     gcgattaatg ttgaatatga gaggtcactg ctcaaaggat ttgctggtgg tgtgtgcgta      1800
     acagttggag ctgtaacgga aaatatcgaa atagatggaa tcgtgaatga actgagaatt      1860
     ctagttgttc cagatgatgt aatgcagtat gacatcctag taggggatga tttcttccgt      1920
     aaagcaggcg taagtgtgtt gaagacagca gatacactga ccatccaatg tgagaaatca      1980
     tcgatcgttg agaaagtgaa atccgggaat actgttcgac caccactggc aatcgacgat      2040
     ctgaatgttg aaccggcttc acccgaaaac gtaaagttac aactggttga actggttaat      2100
     cgttatcgta attgtttcgc attggacctc aaggaaatcg gttacacgga tatcgaaaca      2160
     atgcgcatct cactcaagga agataaggtg gtaagacatg ttccctatag ggttgcatac      2220
     ggtcagcgca aatacttgca gaacgaaata aaagaccttc tcgagaacga cattatagag      2280
     gagtcaacgt ctgagtttgc cagcccagta gtaatcgtac caaaacgcac tggtggacat      2340
     cggatgtgcg tggattaccg tatgcttaat gccatcatcg aaaaggaata ttttcccagc      2400
     aatctcgtag aagaagagat caacaatttg agcggcaaac gtgtgttcac attgttggat      2460
     atgatgaatg gttaccttca aatcggcgtt gctgaggact cccgcaaata caccgccttc      2520
     gttacaccgg atggtcaata tcaattcaag cgtgtgccat ttggtctttc caactccgtc      2580
     agtgtatttt gccgaacgat gagcaaaatt attgagccat tgaaagaaga gggtatttca      2640
     ttctatttcg acgacgtcct gattgccacc aagacggagg aagaaaattt ggcactactt      2700
     gaacgctttc ttatcgaggt ttcaaaatca ggtatgacgc ttaaggtgag taaatgcgaa      2760
     ttcttcaaaa catcgttaga atatctggga catgtcgtca cggagggatg tgtatgtcct      2820
     ggagaaacta aaactgaagc cgttgagaag tttcctgttc ctgttgatcc aagaggcgtt      2880
     agacagtttt tgggtctcac aggatatttt cgtcgcttcg tacaaaatta cggtcaaata      2940
     gcagctccgc tcacaaggct tactggtaag gttccctttg tttggggtga agtggaggag      3000
     aatgcattcc agaatctgaa atttgcatta actaggcggc cggttctggc tttgtacaat      3060
     cccagtcttg aacatgaagt tcattgcgac gcgagtagct ttgggttagc aggaattctc      3120
     atacaggtca atgagaaaca cgaagctcaa ccagtaatgt atttcagtag agctacaacc      3180
     gatccagaat cccgatacca cagctatgaa ttagaagttt tggccgtagt tgaaagtttg      3240
     aaaaaatttc gctactactt gcttaacaaa cacttcaccg tttacacaga ctgccagtcg      3300
     ctagctttaa cgcgagctaa gaaagaactc aatcctcgta tagctcgatg gtggttaaca      3360
     attcaagagt tctcttttga tttgaaattt cgatctggac ggcaaatgaa tcatgttgat      3420
     agtctcagtc gaaatgtagt acgacctact gaagaaactg aacgagtcat ggcgataaat      3480
     gtggatagct tcgattgggt tgctgcactt caactacaag atgggaaaat ctgcaaggta      3540
     aaaaaaatgt tagagggatt attgacaccc gagaaggata tcgtcaagaa ctatgaagag      3600
     gttaacggtc gcatttttcg tataactcca aatggattga aatttgttgt gccaacgaaa      3660
     gtacgcttcc atgttgtgaa gtcgttgcac gatgatatgg ggcatccggg tatagagaaa      3720
     acgaccgagt tggtgaatca ggacttctgg ttcgaaaata tgaatgcttt cgtaagacag      3780
     tacgtaaaat gttgcattga gtgcgcagcg aacaagcggg gacttgacga aacgcggatt      3840
     acaattcata ctcacctgaa gcaacctatt cctttctggg taatccatgc tgactattgt      3900
     ggcccttttc ctaaaagtaa acgacagaat actcaggtcc tcggtatcat cgatgccttc      3960
     acaagattca ttattttgcg ccccactaaa acttgcagta caactggagt gatttcagta      4020
     ctgaaggaaa tttcacagta ttttggcaca cccaagattc ttgtgaccga cagaggagcc      4080
     gcattcatgg caaagacgtt cgccgaattc tgtgaagaac gagatattaa acattcacca      4140
     gtagcagcga aaacacctag agggaatgga caaatagaga ggtgtttcca gtacgtaact      4200
     aatgcgttga aatgcttttc tacggacaca gacgaacgtg attgggattt gaatctacct      4260
     gctgttcagt gggctatgaa tactatgaaa aatcgaacca cgggagagag tccgcaactc      4320
     ttactgcttg gttaccgtcc acgaaatata ttgagcaata agctgcttaa tgcattacgg      4380
     gatgaatccg atatcgttga ggataacgaa ctgcttccag aaataagaca aaaggctctt      4440
     gaaagaatga ctcgcaactc taaacaacaa gctgaacggt ataacgcttc tcacaaagct      4500
     cctcagtcgt ataaagaagg tgatttggtt cttctgcgtt atgagcctcc agctgacggt      4560
     ggatctcgga aattgatgcc gcgataccgt ggcccttacg tgatcgataa agttcttgat      4620
     gccgaccgat atgtagtcaa ggatactcct gctacacaag taacgcagaa agcatttgaa      4680
     tcggtgtatg cagcggacaa gatcaagttg tggggtcatc cgccagaaga tgattttcca      4740
     gaagtctgtg aggaagacaa cagcgaaatc aacggggatt gaaccaggta caaacctgca      4800
     gatagtcaaa aagtatatga ttattaatta ttatttgata aactttattc acagccacga      4860
     aggaacaagg atgctaaaag gtgttggaga gttcaacata attaaacgat taatttgtta      4920
     tcgatctgtt ttgaatttaa taaaaaaaaa ctgtttttgt tcaaatgttg gttgcttaga      4980
     ttgaaaaaaa aaaaaaataa tgcggaaaga acgcgcttgc tatacacagg agtggggtct      5040
     tgagttatgt aaagagtagt tttagttggt gatgtcttac cacgtgacat tttggaggcc      5100
     aaaggcaacg gctgatcagt aacggttctt tgtgagttgc tgttaattgg ctgtacttct      5160
     ataaaattat acatagtaac ggatcttgtg agttactaag cattgacaat ggaacgtgat      5220
     gaattgtcaa tacgctacag aacaactttt aggcaataat ccgtagagcg tatctccgag      5280
     acggagataa gcaggatggc cgaa                                             5304
//
ID   Gypsy-342_AA-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-342_;
KW   Gypsy-342_AA-I; Gypsy-342_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-245
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-245
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 202-202 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 245 BP; 57 A; 42 C; 64 G; 82 T; 0 other;
     tgtaagccag tataagtcta aatgaggcct gtagagacta tattctggtt gtagtaatta        60
     ttttgcacat ccctagactg gctaatcgag tctgtagtct gtgtgttaag tcatcgctca       120
     gtctactacc actcttggat aaaaatacgg ggcagttagt cgttattcgg ttgcctgtca       180
     ttcaagtcgt ggttggaaaa ggctggggct cgattagttt ggtttgtcat ggttggaggt       240
     tcaca                                                                   245
//
ID   Gypsy-343_AA-I repbase;    DNA;    INV; 6207 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-343_;
KW   Gypsy-343_AA-I; Gypsy-343_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6207
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (11-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           913..2202
FT                 /product="Gypsy-343_AA-I_1p"
FT                 /translation="MSSNGRYVRAPIASDNESTDDDYDLDNSSEPAVQEEE
FT                 RESDFSSDESSSNRSRSNEPNDAVNSSNRRGSVDPVSSPKMVSTDDRLQRM
FT                 ENALADITKALNVLQTPVVPNKDTDQIWSNPTALTSAPDIIPSSVRWDNIK
FT                 PFPTRVAANKMWQEWNHYIENFEIAATLNNANDPVRRAQLLFLSVGEELQG
FT                 IIRAAKLRPSLNDANCYRIFVDNIKNYLRTMTDSAAEHEAFLNMKQEKSES
FT                 AVAFHARLMRSVDSCECSPAGQDKFIRAQLLKGLRNKELVKAARTFGHDTA
FT                 SIVLAATRDEAYQAETTANESSEVYAVNRRRPSPDDRRYKPKRSRSDDWGK
FT                 RTTAKRSRHEESNFRRDYRDRVRRDRCSRCGQYSHRNMPCPALRRKCNSCH
FT                 EFGHYAAVCRKASIQQLRMPKDESPKRENEQDENQV"
FT   CDS           2093..5362
FT                 /product="Gypsy-343_AA-I_2p"
FT                 /translation="MNSDTMQQFVVKHRFNSFECRRMSLQSVKMNRMRIRY
FT                 NVVVFFSFFEIYFATILHILSFYFKSVFQHVNTLSLEDVLVDCRLGTSSPI
FT                 QFLVDSGADANVIGGNDWNRLKNELKSGNTKIKIIDDTRSKRLHAYGTSSP
FT                 MVVECLLEAEITVSGRETRTMFSTFYVIPEGRRSLLGRTTSSDLGLLQVGL
FT                 DLDNLEASSSAGEFPKIPGVKVKFCVDKTVPSVKNAYYNVPAAYREAARCR
FT                 LEEMEKRGIIEKVTSAPNWISGMSAVAKGKDDFRLVINMRAPNKAINREYF
FT                 RLPLLEEMKVKLHGSKWFTKLDLSNAFYHLELSKESRDLTTFITEGGMYRY
FT                 TRLMFGVNCAPEIFQREMSRILEGVKSVIVFIDDILIFAKNLQELHKTVNQ
FT                 VLQLLRANNLTLNMKKCEFDKTELKFLGHQLDENGFHVDEEKIKSIRQFRE
FT                 PTTISELRSFLGLASFISAHVKNFAEITRPLWAITTTKSWKWGHDESRAFQ
FT                 AIKERIVKNCVVLGFFSEDDRTILYTDASPIALGAVLVQESTNGTSRIISF
FT                 ASKSLTPTEKRYAQNQREALAAVWAVEHFSYFLLGRKFTLRTDAQGVSFIL
FT                 NRSREESKRALTRADGWALRLSPYRYEVEFIRGTENIADSPSRLYNGEDSA
FT                 FDDAVSPWEVATLEANNVEFMTDDEIKKATAEDTILQGVIQSLKSGDWPAH
FT                 LRPYQLVENDLTTRDGMLVKTGCVVIPDVLRGKTMELAHSGHPSAAKLKSI
FT                 LRQRVWWPGMSTEAQKWVDSCKTCAITGKPERTTPMQRIFAPKAVWETIAL
FT                 DFNGPYVKFGGISILVIVDYRSRYLFARSVKSTSFEHTRKVLEEIFDREGI
FT                 PKSIKTDNGPPFNGEDYKSYCAERGITTVYSTPLFPQQNGLVEGYMKVINK
FT                 AMVSAAVNKTNYVGELREAINAHNAAIHSVTKLPPEEVLSGRRIKRKLPLL
FT                 EYKKVIINEELLNARDRESKLAGKEREDRRRGARQCRIKPGDKVIVERQTR
FT                 AKGESRFSPTQYTVTNEDNGNLTLSDGSGHVVKRHVTQVRKISEWRKEKSD
FT                 AENPEHYSTIERKARQKKTPTYLQDYVQPVAAD"
XX
SQ   Sequence 6207 BP; 1954 A; 1229 C; 1413 G; 1611 T; 0 other;
     ttggcgatcc tgccagtctt taaattattt gttattgaaa ttcctggaat taatttattt        60
     attaaaaaag gagaacaatt actcgaaagg aatcaaccaa aaaacatggc gtttattttt       120
     cactttacct catttgaaac tataaattac aatcagttat aattgtgcaa agtgacttga       180
     aaaaatggta cgtcagtgat aattgtgaaa aaaaagatat gtgttcagat cctagtgtcc       240
     tggctgtgtt tattttgagt ggcaaagtaa gaccacaaca gcttccaaat agaacgattc       300
     tggaatgtcc taattgtgtg tttgacgtgg cacagtaaga ctacatggac gggatcggcc       360
     tcggaatgtt ccgatcatgc aatacatgag caacaccaca tggcacagta agaccatggt       420
     gtttgtaaaa ttggattact tatcaaataa cctagtaaga ccccaacggt gctgaaatat       480
     ttaccataaa ctcagatttt gtgtaagtta agtggcacag taagaccaca catttgccat       540
     cagctcagat ttcgtgtaag ttaagtggca tagtaagacc acaccgctca gccatatcgg       600
     atatttacag aaatactaat tgtgtttgag tggctcagta agtccacaat aactaggtta       660
     attttggtag cagaatacca cgaatgaaaa attcacacaa tgatttgaat tctatgaaca       720
     atgctaaaaa aatagcagca catctgtcac aaagcatatt tcaagccact gaaaattata       780
     acatgattgt tattttcata acatagtaaa gaagtcaaga gacaaaagaa aataattaat       840
     aattgtgtat gtacatataa ataactaaat atatatatat tccatattac cagcaaaatc       900
     gaagctatca caatgtcgag caatggaagg tacgtccgag cacctattgc ctctgataat       960
     gagagcactg atgacgacta tgatctggat aattcaagtg aaccagctgt acaagaagag      1020
     gagagggaaa gtgatttttc aagtgacgag agcagtagca accgtagtcg aagtaatgag      1080
     ccaaacgacg ctgttaactc gtccaaccgt cgtggaagcg ttgaccctgt aagcagtccg      1140
     aagatggtga gcaccgatga ccgacttcaa aggatggaga atgcgttggc ggacatcacg      1200
     aaagcgttga atgttttgca gaccccggtg gtccctaaca aggataccga tcagatctgg      1260
     agtaatccga ctgcgcttac cagcgctcca gatataattc cttcaagtgt ccgttgggac      1320
     aacattaagc ctttcccaac gagagtggct gctaataaaa tgtggcaaga atggaaccat      1380
     tatattgaga attttgagat tgctgcgact ctcaataacg ccaatgatcc cgtccgaaga      1440
     gcacagctgt tatttctctc agttggtgag gaactacaag gtattatcag agcagcaaag      1500
     ttacgaccaa gtctaaacga cgcgaattgt tatcgcattt tcgtcgacaa catcaaaaat      1560
     tacctccgaa caatgaccga ttcagcagcc gagcatgaag cattcttaaa catgaagcag      1620
     gaaaaatccg agtctgcagt tgcctttcat gctcgtttaa tgcgtagtgt cgactcttgc      1680
     gaatgcagcc cagcaggtca agacaaattc attcgagcgc aactcctgaa aggtttgagg      1740
     aacaaggagt tagtgaaggc cgctcgtaca tttggacatg atacggcaag catagtacta      1800
     gctgcaactc gagatgaagc ataccaagct gaaacaacag ccaacgagtc gtcagaagtg      1860
     tatgcagtga accgccgccg tccaagtcca gatgatcgta gatacaagcc gaaacgcagc      1920
     cgttccgatg actggggcaa acgaacaaca gcaaagcggt cccgccacga agagtcaaac      1980
     tttagacgtg actatcgaga tcgcgttcgt cgtgatcgct gttcaagatg cggccagtat      2040
     tcacacagga acatgccttg tccagcgttg agaaggaagt gtaactcgtg tcatgaattc      2100
     ggacactatg cagcagtttg tcgtaaagca tcgattcaac agcttcgaat gccgaaggat      2160
     gagtctccaa agcgtgaaaa tgaacaggat gagaatcagg tataatgtgg ttgttttttt      2220
     ttcctttttc gaaatatact ttgcaacaat tctccacata ctgagttttt attttaaatc      2280
     cgtttttcag cacgttaaca cgctctcctt ggaagacgta ttggtagact gtcgattggg      2340
     aacatctagt cctattcaat tcctagtaga ttcgggagca gatgcgaatg tcattggggg      2400
     aaacgactgg aaccgtctga aaaatgaatt aaaatcaggt aacaccaaga ttaaaattat      2460
     cgatgatact agatcgaaac gtttgcatgc gtatggaacg tcatcaccaa tggttgtgga      2520
     atgtctacta gaggcagaaa ttacagtatc aggacgcgaa acgcggacta tgttctctac      2580
     gttctacgtt atcccggaag gtcgaagatc acttcttgga aggaccacgt cgagtgacct      2640
     tggactgcta caggtaggac tggacctcga taatctggaa gcttcctcaa gcgcaggaga      2700
     attccccaaa atcccaggag taaaagtaaa attttgtgtt gacaaaacag tgccttcagt      2760
     caagaacgcc tactacaatg tgcccgccgc atatcgcgaa gctgcaaggt gccgattgga      2820
     agagatggag aagcgcggca tcatcgaaaa agttacatcg gcccctaatt ggataagcgg      2880
     gatgtcagca gtcgcaaaag gcaaagatga tttccgcttg gtcatcaata tgagggctcc      2940
     gaacaaagca attaatcgag agtactttcg cttgcctctt ttggaagaaa tgaaagtgaa      3000
     gctccatgga tccaaatggt tcacgaaact tgatttaagc aacgcgttct atcacctcga      3060
     gctcagcaag gagtcccggg atcttactac tttcatcacc gagggtggaa tgtatcgcta      3120
     tactaggctc atgttcggag tgaattgcgc acccgaaatt tttcaacgag aaatgtcgcg      3180
     gattctcgag ggtgtaaaga gcgttatcgt atttatcgat gacatactga ttttcgccaa      3240
     aaaccttcaa gagttgcata agaccgtaaa tcaagttcta caattattgc gagccaacaa      3300
     tctaacgctg aacatgaaaa aatgtgaatt tgacaaaacc gaactcaaat ttctgggaca      3360
     tcaacttgac gaaaatggtt ttcacgtgga cgaagagaaa attaagagca ttcgacagtt      3420
     cagagaacct acaactattt ccgaactacg tagtttcctt gggcttgcgt cgttcatcag      3480
     cgcacacgtg aaaaatttcg cagagataac cagaccacta tgggcaatca ctactaccaa      3540
     atcgtggaag tggggacacg acgagagtcg cgcatttcaa gcgattaagg agcgtattgt      3600
     gaagaactgt gttgttctcg gattcttttc tgaggatgat agaacgatcc tatataccga      3660
     tgcttcgcca attgctttgg gagcggtttt agttcaggag agcacaaacg gaacatcgag      3720
     aatcattagc tttgcatcca agtcattgac tccgactgaa aagcgatatg cccagaacca      3780
     gcgagaagct cttgctgcag tatgggcggt tgagcatttt tcatattttc tgttggggcg      3840
     aaaattcaca ttgcgtacgg acgctcaagg agtgtcattt attctcaacc gttcccgtga      3900
     agaatcgaag agagccttaa ctcgcgcaga tgggtgggcg ctgaggctaa gtccatacag      3960
     atatgaggtg gagttcatac gtggaacaga aaatattgcc gattcacctt cacggctgta      4020
     caacggcgag gacagtgcat ttgatgatgc tgtcagccca tgggaagttg caactcttga      4080
     agcgaataac gttgaattca tgacggatga tgagattaaa aaggctacag ctgaagacac      4140
     aattctccaa ggagtaattc aatctctcaa gtcaggagat tggcctgcac atttgaggcc      4200
     atatcagcta gtggagaatg acttgacaac tagagatgga atgttggtaa aaacaggttg      4260
     tgtcgttatc ccagatgtgc tacgaggcaa aacaatggaa ctggctcata gcggtcaccc      4320
     gtcggcagct aaactcaaaa gcattttgag acaacgtgtt tggtggcctg gaatgtcaac      4380
     cgaggcccaa aaatgggttg attcatgtaa aacctgcgcc attacgggaa aaccagaaag      4440
     gacaacgcca atgcaacgta tatttgcgcc aaaggccgtc tgggagacaa tagcgttgga      4500
     ctttaacggt ccatacgtca aattcggggg gatttcaata ctagttatcg tagattaccg      4560
     atcacgctac cttttcgcac gctcagtgaa gtccacaagt tttgaacaca cgcggaaagt      4620
     tcttgaggag attttcgatc gtgagggtat accgaaatcg atcaaaacgg ataacggtcc      4680
     tccatttaat ggggaggact ataaaagcta ctgcgcggaa cggggaataa ctacagttta      4740
     ttcaacccct ttattccctc aacaaaacgg actcgtcgag ggatatatga aagtcattaa      4800
     taaagcaatg gtaagtgcag cagtgaacaa gacaaactat gttggggagc tgcgcgaggc      4860
     aattaatgca cataatgcgg cgatacacag tgtcacaaaa ctcccccccg aagaggtttt      4920
     gagtggtcga agaatcaaac ggaagctacc gctgctagag tacaagaaag tgatcatcaa      4980
     cgaagaactc ctcaatgcca gagaccgaga atcaaagcta gccggtaagg aacgagaaga      5040
     cagacgccgg ggtgcacgtc agtgtcgaat aaaacccggc gataaagtga tagtggagcg      5100
     tcaaacacga gcgaagggag aatcacggtt ttcacccaca cagtatactg ttacaaatga      5160
     agataatggg aatctcaccc tcagcgatgg aagtggtcac gtggttaaac gtcatgttac      5220
     tcaagtgcga aaaatttccg aatggcgaaa ggaaaaatca gatgctgaga atcctgaaca      5280
     ttattctacg attgaacgga aagctcgtca aaagaagact ccaacatatc tccaagatta      5340
     tgtgcaacct gtggcagcag actgagcagg ttgtcacaga taagcgtctg ccgtaacatt      5400
     ttttgcatac cttgttgata ttttcgaacc ctgtttagga atcattgaaa aaactgttaa      5460
     aatatgatca tgggggtgta actgataaga ctgttattaa ataggaaaaa taaaaaagat      5520
     ttcaaagctt caaattttga gattcattta gtgattataa tcttctttta ttttccctgc      5580
     ttatacataa aaaaacgaat aacaaaccag aggcaacagc atccttgacg atctacgatt      5640
     gacacttgcc cactgttttg gccttgggag gatgttttgt ggcatgtttg cagcaccacc      5700
     gttgctttgt ctggcctctt tctcgtagct ggttgattgt cgagttatat gctagtccag      5760
     tcatatgctg aaatgtattt ttgttgctcc agaatatttt tttcagcacg agcaaaattt      5820
     tacgtttaaa aatgtaaata atggaacgaa atttgacgtt tgtgtcaaac tgcgcgaact      5880
     gactagacct gttcgatcat ttgtcggagt tgcacgaatt agctatagac ctgttcaatc      5940
     aaatgtcgga gttcagcggt gagatgtcag tatacacggg aaaatacact agataatttt      6000
     ttaatttatg gaaatgaata tattttattt aataatgttt aatttataga aatgaatgta      6060
     tttgtgtgta cattgaattt acaaagttat ggctcttagt tgctccactc tatggattta      6120
     aatgtggttg tacgcaaaga acagaggtgg aagatcatac accttttttg cggtatctgt      6180
     ttattttttt tttaaggaga ggggtga                                          6207
//
ID   Gypsy-343_AA-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-343_;
KW   Gypsy-343_AA-I; Gypsy-343_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-252
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-252
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 203-203 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 252 BP; 68 A; 63 C; 60 G; 61 T; 0 other;
     tgtgtggtgc acacctaccg catataaaag tgtagcaaca gcttaaagat taggctgcgt        60
     acatcgagtc gataaccagt cgacatccct atgtcaaccg aactcagcga caacgcgttt       120
     ccgtcaacga cagagtgcat caccatcact caccatcttt tggattcgta gtgtcgagaa       180
     ggtaagacgt gtttacggtg atcgtccgga ggccatgttg ctggctgatt cctagtatgg       240
     cagaaatcca ca                                                           252
//
ID   Gypsy-344_AA-I repbase;    DNA;    INV; 6989 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-344_;
KW   Gypsy-344_AA-I; Gypsy-344_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6989
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6989
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 177-177 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6989 BP; 2057 A; 1584 C; 1530 G; 1818 T; 0 other;
     attggcgccc aacgtaaaag aaaaagcgat ttacttcata ggaccgaaag taaatctctt        60
     tttccggtgg tctcccggag aaatttcaat caattagaaa ttaattaaaa tatcgcgttg       120
     tcattagggc aacttcaatc tgaattccgt tttgcgaaaa ggttgcgaaa attgaaaagc       180
     ggacgtccgc ggatgatgat aacccttcac gtcaattctg gagctattgt gttgagaatg       240
     attggaaact gagaatcagc attgaaatac ctaattttgg tttgttaaat gttcgtatta       300
     tgttttagta agtttctctt tctgtttttc aagcatgtcg ttgatttgtt aatttattgt       360
     ttatttacca tttaaatcaa taatttattt agttttgttc taattatttt ttttattttt       420
     acttcttaca tatactttga taaatttggc ttttttgatt taaataattt aataatggca       480
     aattcagtgc ttacttacga tcaagcaagt acacttgttg caaagtggta ctattcaatg       540
     agggttgatt acctactgga tgaggagctc gatgatgaat tgacagctcg tcgtgtcatc       600
     atcactagag acatgaatct cgctcggaaa cgaaagtcgt tgcgagactg tttgaaagct       660
     gagagtgaag gaaaaaatga taattctgtc cacattccta gcgatcccac accagaatta       720
     aatgaatgtt cgaaacgatg ctcggattta agatgtcttt tagcagcaga accaggtgag       780
     gaggaaaagc gtgttttgca tcatagattg ttgcattatg cggcgcgcat agtcagacta       840
     cttacagcat ctaggggatc tccaaatctt cacgggtgta tgcagagcct gcttgtggag       900
     gtagtcaatg agatagaaca gggttttgat acattgtccg aggatcaggg cattacgact       960
     aggacgactc tatcccaaaa aaccttaccg actaataatt gtcaggacga ggatctttcg      1020
     ggaacacatg agccggagaa ttcaggtgaa acgagcggtt ctaacaagat cccaccaacg      1080
     ccatcaaaca gaatgcttca attcagccag aatgagcttg attggattca ttggctggaa      1140
     tcaaggatca tcagtctgga gaatgagttg gcaaagcgta atgagagagt tgatatggcc      1200
     attcaaactg atccatacga tggttatcgt cctaatccac ccacacatcg atatgataat      1260
     aatagctttt ccacccatga atctcaaaat ccattccatt cagctagcaa tagccgcaat      1320
     ttccccccct ttgatcttcc ccaacaacca tcttatcaac aaaataactc aataccagtc      1380
     ccgacagttt ttaatcataa ctctccattc gcacctcaaa accactcatt caccggtaca      1440
     acaatccaaa attcaccaaa ttttccacaa agctcggtta ggaacccacc actggctcga      1500
     attcctttca attctgcccc atacacagct tcttatcaac cacgtcattc gttgcctgtt      1560
     tctaaatgga acatagcgaa atacagtggc gatgatcagg gtctgcgact aaacgagttc      1620
     ctagaactgg tgcaagccct ctctcttgct gaacacgttt cagaacggga gttgtttgag      1680
     tccgctgtac atctcttcac gggatcggct ctgaagtggt acatgaccca aagatcaaca      1740
     ggacgtctga tgaactggga gcatttggtg tttgagcttc gccgcactta catgcaccca      1800
     gatttggacg cgttgatcaa aatgaaaatt taccagcgtc gtcagcaaaa gcaggaatcg      1860
     ttccatgaat actattttga aatggagaag ttattcagga cgatgtgtgt gcagataccc      1920
     gaacacgaaa aggtggctat tactgcagca gaatatgaga gtggattata aaagacagat      1980
     gacgtttatt ccaattcagg atctggagac actcgtggcc gcagggcaaa aactcgacgc      2040
     gctgaacttc tcggcgtaca ataaggtatt cggtgccgaa aagtccgtac aagctatcga      2100
     aaataacgaa catgctagtc ggaaccgtca aaaagctttt cagccacaat cacaacaacc      2160
     aaaccgtcct gcaggttcgt ttaagggccc accaggtaac caaaacaaat ttaatcgtaa      2220
     tgtaccaccc aatgtacaac ccaaagcgca aaatacaact cctaactccc cacatacgtc      2280
     tcaaaaaccc gcatcaactc ccacagcttc gaggagctcc gacacgaaat caccaattcc      2340
     cggtccctcg ggaaatacag ggccacatag accaccagtt actcttgagc aggttgtaaa      2400
     cgggcataaa cccccaagtc caaacacgtg cttcaactgt ggtacaccag gccatcacgt      2460
     tgtcatgtgc cgacagcccc gccggctgtt ctgtgacaac tgtggtctgc acggtttccc      2520
     cactggcttt tgcccttact gcttaaaaaa cggcacgaga gcgaacgaaa atcgccgtcc      2580
     gccgaaccaa gaagcgtaac acccattaac accgattcga acccatcagt cttctgggaa      2640
     cctgcgaccg aagacttcta ccaacgttca accgaaattt gtcaaatcac ctaccctttt      2700
     cctaacgaca atcgaccatt cgtggccgtt aaggtctatg gattctcact acaagctctg      2760
     ctagatagtg gaagcaattt tacaatcatt agcgaaaact tatttactag attaaaacct      2820
     aaaaagcttc accgtccccc tagtcatgtc gcgctgaagt cagccagcgg aaatgaactt      2880
     caaatcctcg gtcaaacaaa tcttcctttc cgttttcgta accgaactaa aatcgtcacg      2940
     acactggtag ttcaaaatct gtcgcttgat tgtatctgcg gcatggactt ctggagaaag      3000
     ttccagattc agcccacaat acagccatgt gagcaactgg gaaatccagg gaatgtggcg      3060
     ttagtaagtc cgtcttgcga cgactcggtt ctgtcggaag aagaaagtcg ccgaattgaa      3120
     gaaatcaagt acctgtttct tccagcgaga gcagggcagt taacaattac cccactcact      3180
     cagcatcgga tcgaaatcag tgaggagtgg aagggcaagc cgcctgtaag gcaatttccc      3240
     tatgtaatgt ctccaaagac acaggaactg gtggcagtgg agctgcagag actgttggat      3300
     gtggggataa ttgagcgcag caattccgaa tggtcgttga actgtgtgcc tgtgatcaaa      3360
     cccactaaag taagactctg tttagacgcg cgcaaaatca atgagaggac tgtgcgtgat      3420
     gcgtaccctt tgccccaccc tggccgtatt ttgggacagc tacctaaagc gaaatacctt      3480
     actactatcg atttgtcaga agcgttctta caggtctctt tagagccagg atcgcgaaaa      3540
     ttcacggcat tcagtgtaca gggcaaaggg ttgttccagt acaccagaat gccttttggc      3600
     cttgtaaaca gcccagccac cttggccagg ctgatggaca acgtcttggg acatggtgta      3660
     ctggaaccga acgttttcgt gtaccttgac gatatcgtca ttgtcacgga aacgttcgag      3720
     catcacgtgc agcttctcac tgaggttgcg cgtcgtctca aggaggcaaa ccttagcata      3780
     aacctcgaaa agtccaagtt tggagttgga gaaattccct tcctaggata tcttctaagt      3840
     acggatggat taagggccaa tccagagaaa attcgcccaa tcgtggacta tgaacgtccc      3900
     aatactgtca caaaacttag aagattccta ggaatggcga attactatcg ccgattcatc      3960
     caaaacttca gcggggtcac ttctgctttg accgacctgc tgcagacaaa atcaaaagtc      4020
     attcgttgga atgatgacgc ggaacgtgcc ttttgcgaga taaaagaatg tctcataacg      4080
     tcacccatac tcggcagtcc tgacttctca aaggagtttg tcatccaaac ggacgcgagc      4140
     gatgtggcgg tagcaggggt actcacgcag cagcaagaag acggagaacg ggtaatctcg      4200
     tacttttccc acaaattgac taccccacag aaaaattatc atgcggcgga aaaagaggct      4260
     ctagccgcta ttctcgctat tgaagcattt cgtgggtacg tcgagggtta tcacttcacc      4320
     ctaatcaccg actcgtccgc gctcactcac attcttagca caaaatggaa agttggatca      4380
     agatgtagta gatgggcact tgacttgcag cagtatgaca tgactgtcgt gcatcgaagg      4440
     gggaaggaga atgtggtagc agatgccctg tcacgtagtg tggcagcagt tcaaaactca      4500
     cctactacac cttggtacga ctccatgtta cagaaggtaa cgagcaagcc ggatgatttt      4560
     gttgatttta aggtggaaga cgggacgctt tataagttcg ttgctgctca agatcacctt      4620
     ttcgatgatc gcttcgaatg gaaattgatt ccaaaagaag cggagattcc caaagtcttg      4680
     caggagtgtc atgactccgt gttccatcca ggctacgaca aaaccatagc aagaattcgc      4740
     cagaggtact actggccgcg aatggcaagc gaagtccgtc gatattgcca gcaatgtcaa      4800
     acctgcaagg aggtcaaagc tgcatctgtc ccagtggcac cagaaatggg caaaatgcgt      4860
     ctcgcctcac gcccctggca gattatttcg gtcgattaca ttggacctct tcctcggagt      4920
     cgccggggaa accagcattt attggttgta tccgattact tttcgaaatg ggtgctgatt      4980
     cagcctgtga gaagtatcgg gagttcaact ttgtgtgcga tcttgaagga ccaatggttt      5040
     caccgaaact ctgtaccaga agtcattata accgacaacg gtagctgctt tttgtcgaaa      5100
     gagttcaaag agctcataga tcgatacaaa atcacgcact ggttgaattc ccggtaccac      5160
     tcacaggcta atcccgtcga aagagtaaat cggacaatca atgcggcgat taggacctac      5220
     gtcaaagaag accagcgtct ttgggacacg aaggttccag aaattgagat ggttctcaac      5280
     tcgagcgttc actcgtcgac tgggtacaca ccgttcttta ttactcacgg tcacgagatg      5340
     tcggagattg gagccgatca tcgtctagct cgccacgatg acgatcttac tccggatgag      5400
     cgagaagccc gaaaactaca gatgttcgca gatctatatg gcatcgtatc gaaaaattta      5460
     gtcaaagctc acgaatcttc gtctaacacc tacaatcttc ggcaccgtaa gtttgcgaaa      5520
     gcattcgttc cgggacagct ggtgtatcgg aggaacatga aactgtccaa tgcaacggaa      5580
     cactataacg ccaaatacgg ccgccaatat cttccttgcc gcgtgaaaaa caaacacggc      5640
     agctcatcgt atgagttaga ggacctcaca ggtaaaaacc tcggtgtttg gcctgccatt      5700
     catctgaagc cgggataaat aaaacacgct attctcagca tcttttattt ttcaaagcag      5760
     cacagtagca aagtcttcat tagctgcatt cattcgaagc tacgcaaaca atcctatcac      5820
     gtgtgcccgg tatgatcctc ttttcctcag aaacacctaa aaataaacca gtaaaatcga      5880
     tcaattaatc aaaatactca cctggtttta gcaaaaagtt gcatctgttc gcgtctaatt      5940
     tagttttcat gtgaaaacac gacaaaaaaa agtgacactc gttgttagct gtcaatgaat      6000
     gctttgacag attagaaacc gaaacatcat tgagtcgaca ttcagggttg tggcgctggc      6060
     ggagcgaaag tacgcagcca tcaaccgcaa aacgataaat agtcggtgtc ttctatcagt      6120
     ggtttccaaa ctttttctct tcgatcaaga gaggtaccaa cggaaaccgt ttgagtggaa      6180
     gcactgaaat catagtagat tgtcgtcacg tgattcgatg aatcgagatg cgtagacgag      6240
     agacaatctc ttatatgtta gggtaccctc aaatttaacc ttatcgtaag ttttaatatt      6300
     tcctagtatg tctgcgtaag aatgaaataa tgtatgactg tgagtgaatg aggggggtgt      6360
     atgattggta ataatgaatg tgaggtgttt gattggtaat aatgaatgtg atgtttatgc      6420
     gtgagtgaaa tttggtccaa tatttttttt gagacataac aaaattgaaa gagagacgtt      6480
     ttaaattgtt tagtctcttt tgaattctga tgcgtagtat aggtagagta agtgacttat      6540
     tctgggtttc tgatcatgct caacaacaat agtgacagct agaacgtgtt tattctgacg      6600
     cataatggat agcctccaca cggatgtttt caaaatcaat tcaataaatg gaatgaggag      6660
     aagagtttca cctgattttg acattatttt ggagtggaca ggctcactcc atcagtgcta      6720
     tacaatccat gaaaaagagc tcctctggtt tccacgaaaa atcatttcgt ggattgtacc      6780
     tagtaaaggt ggagcagtag tcgcactcat cgatgaagac tggacagact cacttcatta      6840
     gtgctacgca atccgtggga aagagctcct ctgattacca tgaaaaatca tcccacggat      6900
     tgtaactagt acccatggag cagcagccgc agtcaacatc aaaacaaaaa aaccatcagt      6960
     ttttttgttt accccgtccc cgggaagat                                        6989
//
ID   Gypsy-344_AA-LTR repbase;    DNA;    INV; 1498 BP.
XX
AC   .
XX
DT   11-JAN-2019 (Rel. 25.01, Created)
DT   11-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-344_;
KW   Gypsy-344_AA-I; Gypsy-344_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1498
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1498
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 204-204 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1498 BP; 445 A; 312 C; 318 G; 423 T; 0 other;
     tgtaaccaac cgttttcatg gttacaatta aaccattgtt ttcagcttaa acagcttgaa        60
     tttgtttaaa taaattgtat attttttgta tatatcattg ttagtaaatg tttaaatata       120
     aaattaatgt ttgtgctccg tttccaaaaa cgtttgagtg tcattaattt tatatttatt       180
     agcctatgtt ggtgccaata ttcccttttt aatgttaata taattttcgt tgtttgttta       240
     tattatttgt cattttgtta ttccatttaa aatattgtta aatcaaaatt aaaattaaat       300
     tccaatttgc aacattacaa gaagcacttg catacaacat tttcaaattt gaaatggcac       360
     caactgaatg tattgttacc ctcgtcgttt gtatggagaa gtgtcaacca gcatcaactg       420
     tcatcatcgc tctggggtgg tgcaaggacc atcggaacgg atatgacatg gagatgatat       480
     ggcggatttt tgggatctgg aaagatatat aagaccttgg gactcccaag cgtcctcttg       540
     taatttgtga tttggcccgg aggaacgaag acagcggcag cgttcgtcac atagtgaagt       600
     ttagtgacca cgcgtttcgg aaacgttaaa gttaaggtag tatcggttag cgaagccaca       660
     cgaaatcgtt aaatttctaa ccgattcatc gagtgggatt agtgtgaagt gaagttcgaa       720
     tccagtggtt ccagaaaaac tgaaatcgta cgccgtacgt cgtgagtgca aaaggtcgag       780
     gaagtgcttg ccagaagcgg tactggcata gtgtgtgtcg aacaattggt agaagagaca       840
     cgaacagtag aaccactgga gggaaaaacc gcatgtaatc ccgaccaaac agttaaatcc       900
     cactcgattg gcaaaagaca ctcgcgaaag aaaaagtgca cacggtaccg ttccccgggc       960
     ccaaaactga agtgaaacgc caggcccacc gttacacggg ccgagttgcc gcagaaaatc      1020
     tggactccct gtccaaaacg taaagggatc cggttgaaac ccctcgccgg ctgcgtccgt      1080
     cccagcatca cccctccacc ttgaagcgtc tcccagtgga acatgtcgac caacgagcat      1140
     cacatcggcc gcaacgatca ttcacagtgg ttcgcaagtg aataaaatgc gcaagtaaaa      1200
     aaaaaacata atttaagctt tttctttgtt ccaaacaagc cctttaaatt gcatggtccc      1260
     cacaattcaa gctgccatct tttttgttgt tggtctttgc tcatggttta gtttatgtgc      1320
     tgaaaactgc cggtaagtgg gttgaaagtc cacctaatgg gttgaagttt ctcctcagat      1380
     cgcccaaata acacgacccg tgaaaagtgt gctgtgaacc tctgtctagt ggaaaacaat      1440
     acagagcagt ggagctcaag cctacagggg ttccccacca cacttcgtta aactatca        1498
//
ID   Gypsy-345_AA-I repbase;    DNA;    INV; 6149 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-345_;
KW   Gypsy-345_AA-I; Gypsy-345_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6149
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6149
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6149 BP; 2204 A; 1297 C; 1111 G; 1537 T; 0 other;
     aattggcgca gccggtagga tagaaagaaa ctggtgttaa gaaaacagga gttttcccaa        60
     agagactgca gcgactggag accggacgtg gtcacgccaa gcacgagttg ggatcatcac       120
     cgacaccgct gcgacaccac caacgcgaac gacagctgtc agtccgccgt ttatttcgcc       180
     taccaccccg gatgctactt gttcaactgt aagtacacac agagtttttt ttatctcaag       240
     tgaaacaaaa cagtgacgat gccggaaacg cggtctagtg aaattgagca gctcaaggct       300
     cagatagcag agctttcaaa tatgattcag ggagccggaa atctctattc cgtgcccgac       360
     cctatcaaac aactatcgga attctccggt aataagaaag agttgatgat ttggctcgac       420
     gaagtcgacc aattatacaa cacttttaaa attaagggcc agaatggtgg acccgacagt       480
     atgaatgcct actatgtgca ggcgataaaa aacaaaataa agggagaagc tctcgtaaca       540
     ttatgcgcga acggtaaccc gtcctccata ccggagatta gaaaagtgct tatacagcac       600
     tacggcgacc aacgtgacat cgccacgaat ttaaatctat tatttaatgt caaaaaaggt       660
     gacaaatctc accacaaatt ctttagcgaa gtcagggaat tggaaactag aataaaatct       720
     aatctacagc tcaatccact atcagcaata gagctactag agatgatcac aatcacaaaa       780
     tatcttgaca acattcagga accgttggca agcatcatta ggactactaa tcctagtagt       840
     ctagaagatg cctttcaaat cgtaacttta aaccagaatg ctgaaactag aaaaccgatc       900
     atcaaaaaac ctccacagtt caatcaccaa tacagtagtt caaattcaga tagggcgaaa       960
     caaaaccctg gaccccagta taaattcaaa cccgctgtta agaatgcatc caaaccaaca      1020
     acttcatacc ctaagcaaaa aatcgaagta aacgccaacg tggcctgcga cgaggaatca      1080
     gatgacaacg agtacgtcga ctatgacgat ggggacgacg acgatggaag tgaagttgaa      1140
     attgaacagc aacccgcggc tgacgaacta aattttcagg cagccagggt aaaacggaaa      1200
     caaacttgaa tttcattcca tatttacgca tcgcaaccac taaaggatta ttaaactttt      1260
     tgatagatac aggtgcgaat aaatcgtata taaatccaca acatgtgaaa actgctaaaa      1320
     aaattaaaaa ccctgctttg gtaacaaaca aaaacggaaa gtttctgatc aaccatatag      1380
     tcaatgccaa tctgctttcg gaatcctatg accataaact tccatattac gtattcaaat      1440
     ttcatagttt cttcgacggc ctcataggct acgaaaatct gtcaaaaatg aatgccgtga      1500
     ttgacacaac caatcatcta cttacgattg ggtcgaaacg gtacacattt tcgaaatatt      1560
     ttccgacatc tttgaacgtc catgaaaccg gcgagaatat aaataaaatc tgcaccacat      1620
     caaacggttc atttttgata aaacacgaaa taaatttaac aagtggtgtg aaactacaac      1680
     ctggtctcta tgaggctaac gacaacgaag cgctggtaca ccttaaattt aacagaccaa      1740
     atttgaaaca tgacttgacg ccatttcaca acgactcctt tattttggaa gacaataata      1800
     acactcagtc gaaattcaag ctcaattttc cttcagagca tttaaatgat gaggaagtaa      1860
     ggcttttagt aaaaacgctg aagccataca aaagtgtctt ttttcatgaa gaccagcaac      1920
     tgagtttcac tcatgatgtg aaacacaata ttacaacgac tgatgaaaaa cccattcatc      1980
     agaaaactta taagtatccg tatcacttaa gggacgaagt ttcggcccaa atcgataagt      2040
     tacttaatac aggcatcata agggaatctt catcccaatg gacatcgccc atttgggtgg      2100
     tccccaaaaa gtccgacaat tccggtaaaa agaaataccg tattgtcgtt gactatcgaa      2160
     aattaaatga gaagactcct gctgataggt atccgatacc cgaagtaagt gagatattag      2220
     atagattggg aaaagctcaa tatttctcag tcttggactt ggcaagtgga ttccaccaaa      2280
     ttgaagtgaa tcccaaagac attccaaaaa ccgctttcaa tattgatcac ggcaaatacg      2340
     agttcgttcg tatgcctttt gggctgaaaa atgcccccgc tacttttcag cggctgatgg      2400
     actcagtttt gagaaaacat ttagggatta gatgttttgt ctatatggac gacatcataa      2460
     tcttttccac atcgctccaa tcgcatttgg aagatattgc gaaggtattg caaaccttga      2520
     aggaagcaaa cctcaaaata caatgcgata aatcggaatt tttgaggaaa gaagttgaat      2580
     tcctcggtca tgttgtgacg accgaaggag tccgacccaa tccacgcaag gtggaagctg      2640
     tgaagaattg gcctcttccc agaacaccaa aggaactaaa atcgtttcta ggaaccgtta      2700
     gttactatag gcggttcata ccacgttttg cacatatagc aaaaccgctg acctcgaaat      2760
     tacgaggaaa tgcgaaatcg ttcgaaatca cacccgaatt cgaacaggcc tttgaaaagt      2820
     taaaggagat tatggctact gatttgatat tagcttatcc caacttcgac ctacccttta      2880
     ttttaactac agatgcctca aacgtggcaa tcggagcagt cttggctcaa tctgtagacg      2940
     gaaaggaacg acctattgcg tatctttcca gaacactctc gaaagctgag gaaaaatatt      3000
     ctgccacagc taaagagtta ttgggcattt acttcgccgc aaaaaccttt cgaccatatt      3060
     tgtatggaag agagttctca atttacacag accatgagcc actcaccaag gaattaaagc      3120
     tcacggatgc cactggtcgt gtaacaagac aacgccttta tttagaacag tttgatttta      3180
     aaataattta taaaaaagga aagcaaaatg ttgttgcgga cgggctttcc agaattcaga      3240
     accaagagct taacttacag gagctaagaa atgaagtttt tccgaacgac caagtgtatg      3300
     gaccagaaat aatcaataaa tacaaaaatc aactcctaat caaaatttca aaagacaaaa      3360
     cgaaaagccc tcatttaaga tgcacgatat ttcccggcca aaccagacac gtgttctaca      3420
     gagaagaata caccgatgca aatttattag aaattcttaa atcttattta gaccctggag      3480
     cagtaaacgg aatttttgcc tcagtagaaa tagtcaaaaa atgcgagcag cttataaacc      3540
     aatatttcca aagaatcaag gttgagtatt ccaatattaa attacccgat ttagtctctt      3600
     tacaggatca acaggatttt atcaaaagat gtcacaattt caatcatcgt gggtataaat      3660
     tgacgtacgg cgaggtgcaa aagtcagttt atttccccgg tatccttgga aaggttaaag      3720
     ccttcataag taattgtgaa gactgtaagt tttccaagta cgaaagaaaa ccctttaaaa      3780
     ttcccctaac aagaagagtt tacgagaaac catttgaaaa tatttatatt gatgtctacg      3840
     ttaaagaaac cgaaaaattc ctcaccctcg tagacgcctt ttcaaaattt gctcaaatct      3900
     ataaaattaa tcatgaaact gcagatgaat tgatcgaaac tctagtggaa tattttaaaa      3960
     cgtacggaat cccgaagctt atcacctgtg atcaagctac aggcttccac aatgcgaagt      4020
     ttaaaagatt cctggaggat caaaacattt ccttgcattt tgccagttgc agtaacagca      4080
     atgggattgt ggaacgtttt cacaatactt tgctggaaat gtacttggca aaccgaagga      4140
     aagtagaacg tttaacactt tacgagggac tcgctctcgt tacagctctc tgtaatgact      4200
     caaaacattc aacaacaaat ttaactccta gagaagtagt atttggcaac tctacttctt      4260
     tgaacataga tgaaataaac attgcgaaac aaagaactat acaaactgcc agggacaaca      4320
     ttaaaatttc ggccgataat cacaatgcaa agttaccgac tatgcattct gataagttca      4380
     aaaatataac caaacagaca atactagtca aaggcaaggc taaaccgacc cccagcggac      4440
     atcgatacag acagattgaa atcaaaaaac agactgacaa aactgtaacc gacgaaaaag      4500
     acatcaaaac gcataaaaaa catgttaaac gttaagaccg atcctttttc taaattattt      4560
     acagactctg cctttgggca gcgacggtac ggacagacct cttaatacat gaccttaaca      4620
     aaaacccttt ggccatcgta cctcttggac cggcaaggat tagtaacagc tacttaagat      4680
     tagtacatcg aatcaatctc caattgatag atgaagcaat taaaaatcta aattaccaag      4740
     ctcaggacag gataaataac cagagtttga tgagccctct agtaaagccc aaaatcgaaa      4800
     aattgaattc aatcttcaaa aaattacagc cctatgccag aattaaaaga tgggaatctt      4860
     taggaaagtt ctggaaatat atttcaggaa gtccagatgc cgaggacttg aaaattataa      4920
     ataaaacttc taacttgttg atagatcaga atgataaaca aattaatatc aatcatgtat      4980
     ttgagaacag aattaacaat atttcaaata ctatactgac aatagtacat aatttagact      5040
     cagcagaatc aagaacatta actggatttg acataattag ttttcttttc aatattgacg      5100
     agctcatcaa acagttagaa tacatagaag aagctataga tctggccagg ctgaatatac      5160
     caagcagtcg catcatcagt ctctccgaat tagaagcagt tcaacaattc ctcaccgaga      5220
     atggattaga aactaccctt attgaaaacg ttttggacat agccagcgct tatgtcatct      5280
     acaataagca cacaattgta tacatcctga aagtacctcg aatcaagaat gcgcagtaca      5340
     ccatgaacta catcgaatca gttatcgtta acaaaacgaa aattttcctc gcttcaaact      5400
     actatctgac aggtcccaca ttatatagta ccaaaacacc gtgcaataag tacaggaaca      5460
     tctatatatg ccttaacaaa cagttggaac ccgtaaccga gtgtatccag caaatcctag      5520
     aaggcgaaac agcacagtgt cctgtggaga aagtctatac taataatatc attacaagta      5580
     ttgatgatgg taatattttc gttaacgatg cagacataca attagcatcc aactgctcaa      5640
     atcatcaacg acacctaaaa ggagcatacc ttatacaatt ttcgagttgt atgctaaaac      5700
     taaacgggga agagtatacc aacagcaaca tggaaattcc atcgaaatcg tttattccta      5760
     caacaggagt aaaggtaaat tcaacccgca ccataaatcg cattccttta gagtacttgc      5820
     aggaacttca cctggaacaa cgaaaacaca ttgaacatct caatctgacg acaaaaaatc      5880
     ttcattggaa cgtacatttt ttcggctggc tgtcttttgg tggaatatca accgtctcta      5940
     cattcctaat agtcatcatc gcaatctggg tgatcaaatc actcatcccg cataagacaa      6000
     cattggtgat acccaaggaa gaactatcga cggacgacgc gaacccgagg gaggcagcaa      6060
     catcgaaaaa atttctcaac ataccattcc taccacaggg gtaaaacata accatacgct      6120
     gaggacagct tttcttcgag aaggagagc                                        6149
//
ID   Gypsy-345_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-345_;
KW   Gypsy-345_AA-I; Gypsy-345_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-242
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 205-205 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 242 BP; 68 A; 41 C; 61 G; 72 T; 0 other;
     cgttaggaac cactgctggt gcatcaggcc acgtcgcgcg cgccaggtat tcggacaggt        60
     ataggaatgc ttggtaagca gttttagatt ataaatgtgg ccgatccacg cggttcgacc       120
     tctttttcct tgacagcgcg gtagtagcaa caggtctaaa ttgtagttaa cattgtgtaa       180
     gtaataaatt gaagtgaaag tgtatttttt aaaaagtgat tattggaaag aatagtcctt       240
     at                                                                      242
//
ID   Gypsy-346_AA-I repbase;    DNA;    INV; 5956 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-346_;
KW   Gypsy-346_AA-I; Gypsy-346_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5956
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5956
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 178-178 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5956 BP; 1882 A; 1172 C; 1400 G; 1502 T; 0 other;
     ttggcgtagt aagcgctccc agcaagtaag tataagattc tctgagaaaa gcacgaaaac        60
     ttccaagcat gtgtaaccca attccggcaa aaaaaaagat aagccgtttc aaagtttgaa       120
     tttggcaaaa aaagaaaggt aagccattta ctcataccag gcaaaaaaaa aaaaaaagaa       180
     aagttgagcc tagcttcacg aaggatgcaa aaattgaaaa cgaattggca aaaaaacaag       240
     atgagcttat tctgaacaaa atggcaaaga aaataaggta agccagaaat tgaattcaaa       300
     tggcaaaaaa aatagataag ccattatgaa gatgaatcag agttcgataa attggttaca       360
     caaatttgat catacttgga agtcaaaaca aattgaggtt atagaactga cattaagaac       420
     attgcactta cagaaagaaa aagagttcca aattggatgc ggctatacga gatctatccg       480
     aagccaatat cagtaacgct ctcctagcag aagagctggc aaaagcgcaa gaaacaatcc       540
     gttcgttgca aacaagtctg tcgtctgcca gaagcgaatg cggcgaagta aacagcgttg       600
     aatttgagaa cgatttgggg ccaaccagta ccaggcgaca agcacagcgt agaagcgata       660
     ctactattga gttgtctcgg tttgtctcat cgatgaacca gatgtccgtg tcatcaatca       720
     atgtgccgga atgcaagccg agtgttgagg gcgacgatat ttctaagatt gatttcgacg       780
     cttggcaaga tctcttgacg aattcattgg cattggcagg cattaccgac gaagcaacac       840
     agatggcggt gtttaaggtg aaggcgggcc agaagcttct ggaagtctac aaagcgacgg       900
     aatcttccag tgaagctcca gatgagaaaa tgtgcccttt ttcaaatgcc atatttcgtc       960
     tgaagacctt ctttgcatct acttcggacg tcatgctcca acgcagaaag cttgctctca      1020
     tgtcgcagat gcctactgaa tcagacctag cgttcatcag aagggttgga ttagcggcac      1080
     ggcagtgtga gtacccagaa ggaaagcaat tcgaagaaat tttgagcact gtggcagagc      1140
     aggccaagca taaggaggta cgagttgctg ctctgaaaat gatgagccga aagggatcac      1200
     tcgccgatct catcgataag gttcgagaga ttgagactat acgtttgaat gaagaatatg      1260
     tctcgaagaa gcatgccgct accgaaccaa ttacagcctc tgtgaatgca gtaagagcta      1320
     ctgctgggcc ttcacggtat gttccaaact acacgactcc agcgtatggt aggactcctt      1380
     accagcgatc taaccctcga ggaggacgag gccagcgacc agtaaggatg tggcgaggtt      1440
     caagctcacc tgttccagaa cgatgcacaa ggtgcaacag tatttaccat actgcggaga      1500
     gatgcttcgc gatcaattta acgtgtcata actgcggtgg cgttggtcat cttttgagag      1560
     cgtgtaactt gccggtggca ccaagaaacc gtcggcaact cgatgaccga aagctcaatg      1620
     aaaagcagtt ggaggtagat gtgctcggaa ccaaaccaga agcaaaggtt ggcgatgaca      1680
     gcgacgagaa atctgtaagt gaagcttaaa taacaattac aatattattg atgggcaagt      1740
     aaagagatat gtttattgat tttcattgat taccattttg aataacaaaa aaaaaaacat      1800
     aaataaacca agtgaattcg ttacattagt ttagtatgtt acaattatta atttcgtatg      1860
     atgacaagaa ctttcaaaat tattgttctg cccatcatga tgatggtttt cgtatagctt      1920
     gactaaaata tttgctttgc caggtcaccg aaatgggaaa tgcaaataca gtaacaacaa      1980
     tggcagaggt gtgcgagcca acagatagcg gagttataaa tgccaaggtg gcgggaatgc      2040
     cgtgcacttt tttgattgat tccggcgccc aggtcaacac aatgacggca gccaattttg      2100
     aacagttgct cgcaaacgag gaatatagca aagaattgca taatattcaa cccggcactg      2160
     atcgaccgtt gaaaggctac gcaacagcgg attcaataca ggtgttatgt acgttcgaag      2220
     ctttcctaca aatatcggat gatcgtccgg tgtttctgga acgattttat gtggtaagag      2280
     aattgcgttc gctgctaagt agatctacag caaccagata cagcatccta ctgcttggat      2340
     tgaaagttcc tgtcaatgct actaagttcg gaaaagagtg cgataaccac tggcggaata      2400
     ttgctttcgt aagtactgca ggaccatttc caaagttcaa cattccagca gtgaaaataa      2460
     gctatgatac gtctatgcca ccttgccgta acatttatat gaacgtacca actgcaatga      2520
     aacaggctgt gaatcatcga ctggaggagt taatctcctc ggatatcatc gagcgagtat      2580
     cagatggcat ggacgtgtcg ttctgttcat caatgctcat tgtaccgaaa ggaccaaatg      2640
     acttcagact tgtcgtggat ttgcggggtc cgaaccgata cattctccgt agcccatata      2700
     ctatgcctag tatggacaaa attcttgcga agttggaagg tgcaaaatgg ttttctaccg      2760
     tagacttgtc cagcgctttc tttcacatag agattcacga aagttgcaga cacttgacaa      2820
     attttatgac tgaatttggc atgtttcgtt acaaacgtct tcccttcgga ttgtgcaact      2880
     caccagacat cttccaggaa gtcatggagc gcacaattct agcagactgc gaaggggtgt      2940
     gcaactatct cgatgacgtc ctaatttttg gtgatacgaa agaggagcac gataggaatc      3000
     tctccaaggt tcaggatagg ctaagagacc ataatgtaaa gatcaaccac tcaaaaagcg      3060
     tattcggtag ccaaaccgta acatttgtgg gatttgagtt gaccgcagag ggatggagaa      3120
     ttgatcagca gaaaattagc gccattaaaa actttaaacg gcccacatct tgtgctgagg      3180
     ttaaaagttt tcttggtatg ataacttttg tggataaatt cctcgttcat cgtgcgacca      3240
     agaccgaaca tcttaggaca ttgtcgaacg ctgctaaatt ttactggaca gacatggagg      3300
     aagctgaatt tgtttctatg cagaccgatg ctctagaagc tatcaggaca ttgggctact      3360
     acagtactac agacaagacg gagctttttg tggatgcctc tggagttggt ttaggagctg      3420
     tattagttca atacaattcg aacggaattc caaggataat tgcgtgtgca tcgaaggctc      3480
     tcacggcggc ggaaaagaat taccctcagt ctcataggga agctttggca gttgtatggg      3540
     gtattgaacg cttcacgttc tacctcaccg gtcgaccttt tgttgtacga acggacgctt      3600
     cagcgaatga atttatttat cattcaaatc accgcattgg gaaacgtgct ttctccagag      3660
     ctgaaggtta cgcactaaga ttacagccgt tcgattttac actggacaga attaacgggg      3720
     aagacaatgt ggcagacgct ttatcgcgat tgatttgcga aactcaacaa ccagaaccct      3780
     tcgatgacga taatgactac cacgtgctgt gcgctttgga cgcaggttgc atggaaatta      3840
     cattgagcga gattgagtcg tatgccgaac aagacgaaga gctgagcgag ctgcggattg      3900
     ccttgaaaaa tgacgtatgg ccgaaggaat tacgtaagtt tgaagttcat aagaaaaatc      3960
     ttcacactct tggtgcactt ctctgtaaag gagataagat aattttgccg aaagaactga      4020
     gaggaaaagc gctgcgatct gctcatagcg gacatatcgg ggaggtagct atgaagcgta      4080
     ttatgcgtga tttcttttgg tggccgaaaa tgggtaccga tactgagaat ttcatcaaaa      4140
     attgtgaaac gtgcgtacta atatctagaa agaaccctcc ggttcccttg tcatcacgag      4200
     aacttccgga aggaccatgg gagatagtac aaatagattt cctcaaagtc ccaggttttg      4260
     gatccggaga attcctcatg ctagtcgata cgtattcgag gtttctattt gttgtcgaga      4320
     tgcaacggac aaacgctgaa gctaccaatt cagcattaca agaaatcttt agattgtggg      4380
     gactaccact cataatacag agtgacaacg gtcctccttt ccaaagtcaa tccttttgtg      4440
     atttctggca agaaagaggg gtaaaagtgc gcaaatcgat cccactgagc ccacagtcca      4500
     atggtctagt ggagcgccaa aatcaagcaa ttatcaagac attatctgcg gcaaaaattg      4560
     aaggcaaaca ttggaggaaa gagctggatg tgtttgtgca caatcacaac actttgatac      4620
     ctcattctcg gttgaatgtt acacccttcg aacttcttgc gggctggaaa ttccgaggaa      4680
     cgtttccaag tctgtggagt gataggactc aaagagaagt tgaccgggac aaggttcgag      4740
     aagatgacgc ggaacaaaaa ttgacaagct caaaatatgc agaccgtgta cgacaggcca      4800
     aaccctcagg aatccatata ggggacgtag tttttgtgaa gcagcagaag aaatccaaaa      4860
     cagacccaac gttttctact gagagatata cggtggtcgc acaagagggg gcgaagatgg      4920
     tgatcgttag cggaaacggc gtacagtatg caaggagcat aaacgatttg aagaaagttc      4980
     cctgtggccc agcacctggc gtaccaacta taacggatac tgatgaggaa tacgaagtag      5040
     acaagaaggt tgtcgcccag atggaaagcc ctgagaagac ctacatacag acccgatcag      5100
     gacttcatcg aagagaagtg aaaaaacctt cgcgattcaa caacgatttt gtctatagaa      5160
     tattccagtg aggcacggtt tgttactact taagacgtag attccatttg caagaactgg      5220
     aaccaagaag attaaaatta gctgtaagaa aatgaacatt gttacctgag aaaataaacg      5280
     ctttatcttt gcccatccta tacattattt tcctaattcc tgcgtccatc taactgaagt      5340
     aagggcttgc aatgtatttt tgtccgttca tgcgagatat tggcacttgg catattacag      5400
     tggttggcct agcaatcaag cgatcggatt gggcgggatt tcctcctggc tggtgtcgtc      5460
     tggtgtagtc gatttcgggg aaacaatgat cgctttacat aaagtaataa ttacttatta      5520
     ttgtttcgag attttgcaca aatttagcgg ggcttgatca gcgtaaattt gatttatgaa      5580
     aagcagcgga gaaaaaactc aatggaaaac aaacaaaaac aaactgacgt tgcccaaagt      5640
     tctgacattt gacattgaca gttgttcgtt tgcgaagtca aggcgtgatg cctacgtggg      5700
     cgtcacatca caagtgcacg ggatgcaaaa aaaggccttt tcgaacagca cggagaaatc      5760
     agactacaaa aaaaatataa gttgttttaa ctcaaatttg tgaatgggtc gagaaatgta      5820
     attttaaacg gaggtcaatt tattcattgc ttcttgacta aggacaggct cctgcggttt      5880
     caatattcaa aattgttatt taacatcgga gatgacacat cattctctga aaaaaaagag      5940
     tagaagaaag gaatat                                                      5956
//
ID   Gypsy-346_AA-LTR repbase;    DNA;    INV; 500 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-346_;
KW   Gypsy-346_AA-I; Gypsy-346_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-500
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-500
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 206-206 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 500 BP; 172 A; 85 C; 111 G; 132 T; 0 other;
     tgtgggatat atgatgggta ctaatctaaa ataaaaacac taattgaaat aactgtgtga        60
     agaggaagct ttgtttacac aaagaccgaa aggattgaag aacaaaaaaa atacctaaac       120
     gatgtttgcg tctaacgcaa ggccggtaaa ataaaaagca cagtttggag atctcgagta       180
     aacgcgattt gttgatcgac ctccaattcg acgaaagcat caacggaaaa tctattcaca       240
     cttgttcggt gtaagtttca ctgtgtgaag gttgtactgc cactgtatca agaattttaa       300
     gcgtgtttgg agatttgaag agcgccaaaa gaaggtgagt gtgacgctca gcttttcatc       360
     gattttggag actctacttt ggttgatgca atcgagtctt cacggcataa gatcattcag       420
     tgttctaaat tcgaagcgat aacacgcgtt tgtgaaaact caaaaattca acaaaaaaat       480
     ggagtcccgg agctacgaca                                                   500
//
ID   Gypsy-347_AA-I repbase;    DNA;    INV; 5659 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-347_;
KW   Gypsy-347_AA-I; Gypsy-347_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5659
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5659
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..1271
FT                 /product="Gypsy-347_AA-I_1p"
FT                 /translation="MKELEEERLRNASLVARLRKAKSNNKLLEKSMGQGSF
FT                 VRLNSTMHNEQTIDDNNSVLMTSMSNLSFASLQVPECKPIDGEDDIDRKSY
FT                 EQWKHILEASMQLAGVVDEATKMNIFRIKAGPKLLDVSXSTLSYPDSPDHE
FT                 TFPYANAVHRLNAFFGSRDYVFMQRQRLRSLIQKPGESDVQYVKRVIAVAK
FT                 LCDFTEDNLAEHVADSIQSHALNRKVRETGRKILRKGGSLVELLERVRALE
FT                 MEQLNEDIFAKNHQQSQHLEVAAVSYGNQRNRGMPTGTSNKRAGVQQRFSS
FT                 NWRSERGRGYNRRQFVRNTTSSRVPCWRCMSKQHQASECYAIDKICRNCNI
FT                 RGNLNVPVINQVTERPQLNRSSAGTATMRRILQPIRKGLRLLRRKIQACWK
FT                 IR"
FT   CDS           join(1472..2542,2546..3931)
FT                 /product="Gypsy-347_AA-I_2p"
FT                 /translation="MLMSKGPAMMIVDVTNVRSTSEEVSCGEECHNLNSIS
FT                 KLGKGPLKAMNNETVVGIVAGVEIPFLIDSGAEVNTVGSDLFEKLMRNDTS
FT                 RLGIFCIKEGSDKPLRAYATKDEIQVIATFVAELTINDDRPRFMEKFYAVR
FT                 DARSLLGRSTAIRYSVLQLGLNVPIYSDWCNSYPGEIRSLTTNKEFPKFSV
FT                 DPVVINYDKNMPPSRKIFTSIPPAFRSETDRRLNELLDSGIIERVTDEMDK
FT                 SYCSSLLVVPKGKHDIRLVVDLRGPNKAIIRTPFKMPTLESIMTDLPGSKW
FT                 FSTIDLTSAFFHVVLDEKSRHLTNFFAGDGMYRFKRLPFGLTNAPDIFQEI
FT                 LQTVVLVGCKGVRNRIPGTMNIADALSRLISKSQVDEAFEENDEKHLLYAI
FT                 DIGCMNITWESIELESETDADLVVVRAALKSGDWDEKYIRYAAQSKELRVL
FT                 GCMIFKNDKVILPSALRLTAIADAHQGHIGAPAMKRILRDYFWWPGISADV
FT                 EYFVKNCETCIVMSRKNPPIPLSNRQLPDGPWEIMQVDFLKVPGCGYGEFM
FT                 ILVDTYSRYISVIEMKSTDAKSTNEALQKIFFIWGLPLIIQSDNGPPFQSS
FT                 EFVEFWESKGVKVRKSIPLCPQTNGAVERQNQGVIKALSAAKIEGESWKKA
FT                 LQQYVHVHNTLKPHARLGITPFELLAGWKYRGTFPALWDAKLDKIDRDDVR
FT                 ENDATTKLQGKLYADAHRGAKSSDIVVGDVVLMASYKKTKTDPTFYKERFT
FT                 VISRDGPKVVVRSERGVQYTRNVQDIKRAPVVDSSNDQEPIDTDDVEKCII
FT                 DNDEAVSMEPAMEPATT"
XX
SQ   Sequence 5659 BP; 1745 A; 1118 C; 1268 G; 1519 T; 9 other;
     atggcgcagt gagtgatgcg acaaacgctc ccacaaaaaa gaagactacg agatcaacag        60
     tggcgaagga tccgtctgca ttgatgaaag aattggaaga ggaaagattg cgtaatgctt       120
     ccttggtcgc caggctaaga aaagctaaaa gcaacaataa actattggaa aaatcaatgg       180
     gccaaggcag ttttgtcagg ctgaactcaa cgatgcataa cgaacaaaca attgatgata       240
     acaattctgt cctaatgaca tcaatgagca atctctcgtt tgcctctttg caagtaccag       300
     agtgcaaacc gatagatgga gaagatgaca tcgaccgtaa atcgtatgaa cagtggaagc       360
     atattttgga agcgtcaatg caactggcgg gagtggtgga cgaagccaca aagatgaata       420
     ttttcagaat caaagcaggc ccgaaattgc tggatgtmtc wgakagcaca ctgtcgtacc       480
     cggactcccc tgatcatgaa acgtttccat atgccaatgc tgttcatcgc ttgaacgcat       540
     tttttggatc acgggattac gttttcatgc agcgccaaag gctgaggtca ttgatccaga       600
     aacccggaga atctgatgtt caatatgtta agcgtgtaat tgcagttgct aagctttgcg       660
     acttcaccga ggacaacttg gcagagcatg tagcggattc tattcaatca catgcactca       720
     accgcaaggt tcgcgagacg ggcagaaaaa ttctgcgtaa gggtggttcg cttgtcgaac       780
     tactagagag agtacgtgct ttggagatgg aacaactcaa tgaggatata ttcgctaaaa       840
     atcatcaaca gtcgcagcac ctggaggtag cagcagtttc ctatgggaac cagaggaacc       900
     gcggaatgcc tactggaact tcgaacaaac gagcaggagt gcaacaacgg ttctccagta       960
     actggagatc tgaaagaggt agaggatata atcgtcgtca gttcgttaga aacacgacgt      1020
     catcacgtgt accgtgttgg agatgtatga gcaagcagca ccaagcctct gaatgttacg      1080
     ctatcgacaa gatttgtcgt aactgtaaca ttaggggcaa tttgaacgtg cctgtcatca      1140
     atcaggtaac agagcgacct caactcaacc gatcaagcgc cggtacagca acgatgcgaa      1200
     ggattcttca accaattcga aaagggttgc ggttgttaag gaggaagatt caagcctgtt      1260
     ggaagattcg gtaagtgctc aaacttcagt ttaactttcg ttatccacgg catttggaat      1320
     ggcattttct ttcgttgttt tttttttttt ttatatatca taagaaaaat gaattgatta      1380
     ataaatccga cattgattta aacataaatt aacaacatta tttgaaacaa aattccagaa      1440
     atgtatctcc cctcgttcaa ttacgactga gatgctgatg tctaaaggtc ctgcgatgat      1500
     gatcgtagac gtgaccaatg tgcggtccac ctccgaagaa gtatcatgcg gagaggagtg      1560
     ccataactta aattctatta gcaaacttgg aaaaggccca ctgaaagcta tgaacaatga      1620
     gaccgttgtt gggattgtag caggtgttga aattcccttt ctaattgatt ctggggcgga      1680
     agtaaatacc gttggaagtg atctgtttga aaagcttatg agaaatgata cgtcgagact      1740
     tggaattttt tgtatcaaag aaggcagcga caaaccactg agagcttatg caacaaagga      1800
     cgagattcaa gtcattgcaa ccttcgtcgc cgagctgaca atcaacgatg ataggccgcg      1860
     tttcatggaa aaattctatg ctgtcagaga tgctcgttcg ctactcggta gaagtactgc      1920
     cattcgctac agtgtgttgc aacttggatt aaacgtaccg atctattctg attggtgtaa      1980
     tagttaccca ggagaaattc gttcactaac cacaaacaaa gagtttccta agttcagtgt      2040
     ggatccagtt gttattaatt atgataagaa catgcctccg tccagaaaaa tattcactag      2100
     catccccccg gcattccgat ctgaaactga tcgacggcta aatgaattat tggattctgg      2160
     cattatagaa cgagtaactg acgagatgga caagtcttat tgctcctcgc ttcttgtcgt      2220
     cccaaaaggg aaacatgata ttcgacttgt tgtggatttg aggggaccca acaaagctat      2280
     tatacgtacc cctttcaaaa tgcctacctt ggaatccata atgaccgacc ttcccggtag      2340
     taagtggttt tcgacaatcg atcttacaag tgcttttttt cacgtggttc tagatgagaa      2400
     atcacggcac ttgacaaatt ttttcgcagg cgacgggatg tatcggttta agagactgcc      2460
     atttgggcta actaatgcac ccgacatttt tcaagagatt cttcaaacgg ttgtgctcgt      2520
     tggctgcaaa ggagttcgca actagcgtat tcctggaacc atgaacatag cggacgcctt      2580
     gtcccgtttg atatcgaaat cacaagtcga cgaagctttt gaagaaaatg atgagaaaca      2640
     tttgctgtat gcgatagaca tcggttgtat gaacataact tgggagagca ttgaacttga      2700
     atccgagaca gacgcagatc tagtcgtcgt cagagcagca ttgaaatcag gtgattggga      2760
     cgagaaatac attcgatacg cagcacaatc caaggaactg cgtgttttag gatgtatgat      2820
     tttcaagaat gacaaggtca ttctgccatc tgcattgcgt ttaacagcaa tagctgatgc      2880
     acatcaagga cacattggag cmcctgctat gaagaggatt ctacgggatt acttttggtg      2940
     gccgggcatt agcgctgacg ttgaatactt cgttaaaaat tgcgagacgt gcatcgttat      3000
     gtctagaaag aatccaccga ttcccctctc taatcgacaa ctacccgatg gaccatggga      3060
     aatcatgcaa gtggactttc taaaggtacc aggctgcggc tacggagaat tcatgatttt      3120
     agtagataca tattctcgat acatttcggt gattgaaatg aaatctaccg atgctaagag      3180
     tacaaatgaa gcactgcaga aaatattctt catctggggt ctaccgttga taatacaaag      3240
     tgacaatgga cccccattcc aaagttctga gttcgttgaa ttttgggaat caaaaggtgt      3300
     gaaagtgagg aaatccatac cgctttgtcc tcaaacaaat ggggcagtag agcgtcaaaa      3360
     tcaaggcgtc attaaagctc tgtcggcagc caaaatcgaa ggagaaagtt ggaaaaaagc      3420
     tcttcaacag tacgtacatg tgcataatac attgaaaccc catgctcgcc ttggtataac      3480
     gccgttcgaa ctattggcgg ggtggaaata cagagggact ttcccggcac tctgggatgc      3540
     taagctggat aaaattgatc gtgacgatgt tcgggaaaac gatgcgacta caaaactgca      3600
     aggtaaactg tatgcagacg cccatagagg ggcgaaatca tcggatattg tggttgggga      3660
     tgtcgtattg atggcttcgt ataagaaaac gaaaactgat cctaccttct acaaggagcg      3720
     ttttactgtt atatcgcgag atgggccaaa agttgtagta agaagtgaac gcggcgttca      3780
     atatacgagg aatgtgcagg acatcaagcg cgctcctgta gttgatagct caaacgatca      3840
     agaaccaata gatacggatg acgtcgaaaa gtgcattatt gataatgacg aagctgtatc      3900
     gatggaacca gctatggaac cagcaaccac gtagcaacca cggcaaagcc tcatcgcact      3960
     atcagaaaac cgcaaagata caaggacatg gttgcgtacc acatattcca atgatggctg      4020
     ggccttagaa acgcgtaagt taacagtttt tttttwaact ttcagacact cagacatttc      4080
     attgacaatt acttcctcta tttaggtgat atctgaggca accatgttgt ggaatcgttt      4140
     ttaccttgga acagaaatgt tttgctctgt aatttgatat taagaaattt atttcatgtc      4200
     tcgtatcttg aagtggtaat actgtggcca ctgttctttc aaaacaataa acgataawtt      4260
     gtcaacatta gcattaactg tgttataaat catttgggat tgaattgttg caaatccatg      4320
     agcttaattt tcaaaattat aacgaaaata actaccggta taacgttgga agacaaaaca      4380
     aaggtgaggc agcatccatt tattacgtaa cgataaaatt ggcgattttc acccatattg      4440
     cagtttctac gaagttttca aaaaggtaag gcagtcccga atgcattcaa atgttcaaat      4500
     attcactata gggtttagat caaatttggc acttccatga ttcattatat ggtgtttttt      4560
     agtcggtcgg attgtttgaa acttcacaat cagaagcact tcaatacgcc gcattgtatt      4620
     atcgtagcaa atttgaatac attgctttaa taataaaaaa aagaagaaag aaacaagctg      4680
     taatcaatcg aaagtgtcaa taataggagc tggtacccta ctgtataaac cctttccgaa      4740
     mtctttcgca tgatgtaact cgggtggagt tcaatatcat attaagctct agtgtgagcg      4800
     acgatcgaac aatcccgttg aaattataac aaaaaaaaat aattaagaga caacgtacta      4860
     tatatgtgct gaaacagata aagcaggtca cgtaccaatt gaattccatg tcataataga      4920
     ccattgcaag cccatgagct atctatttcc taccgaacgt gttcaaaaca taacagtcgt      4980
     agtgaaaata ttgatccgta cagccatata tttataacct aaaatgacga gaagagatct      5040
     gttaaattat actgtattcc atacttacca gctgccagtt gatccctcag ctgcagcgtg      5100
     ggaggaccct tcccccatag gaggaatgga tccctctccg tttaataggc agtgagcctt      5160
     gccgggattg tgcatcgtgc cggcctgcca tcggaggagg ttgatcacgc gttgtcccgc      5220
     acagtggcgg gactctgtcc agcttttttg gagggaagca gcgattccaa tcacgaattc      5280
     gttccggcta taactttatt cctggtaata ttgattcctt ccatctggat cagtgccatc      5340
     cctcgttgtt tatgatgtcg tcgacttatc tcgttttttt ttttcttact gtagactctc      5400
     cgaataaaag ttgcgaaaac gaaggaaaca agcgttgatt ctgaccatgg acaatggaca      5460
     atgccattcc aacagaggaa gtctaattag agttatccca cgctagagcc gaatgtagaa      5520
     taaaatttca actcgtttat atcttgggca gataccgtac cagtgtgtca taagtacaag      5580
     ataggtggmt cagcattgtt tgaattattt aaacggaaac tacgtgaaat atttcaawta      5640
     gagtggaagt gaaggtgga                                                   5659
//
ID   Gypsy-347_AA-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-347_;
KW   Gypsy-347_AA-I; Gypsy-347_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-317
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-317
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 207-207 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 317 BP; 93 A; 38 C; 80 G; 106 T; 0 other;
     tgtagttatt atgagtacgt tattgattga aattgaattg aatattttct gagtgtatca        60
     attctacgac tactacagaa cagtcagtat tggtctaaaa ttagttttgg tctaaaaaat       120
     ggagattgtg ggtatggatc aaggatcgtg tagaatagaa atggagagaa tgctactgga       180
     cgattgggat tgccacaggt tcgcgatcca agctcactag ctcagttttg agtttgatgt       240
     tgaaaagtga agtgttatag tgaagtgttc ggtgtatcca attgtgtagt ttggctgcaa       300
     tatggacgat tcctaca                                                      317
//
ID   Gypsy-348_AA-I repbase;    DNA;    INV; 5825 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-348_;
KW   Gypsy-348_AA-I; Gypsy-348_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5825
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5825
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 179-179 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5825 BP; 2066 A; 1214 C; 1085 G; 1460 T; 0 other;
     ggtgtcagaa gtgggatttc tacatagtga gtgtgaaaat aaaggtgatt ggtgaaactg        60
     ctccaggagg accggatcac gctaggcata agcacgagga cttcaacatt tgcagacctt       120
     cgagcatcgc agcgacatcg acctactagg acgacatcaa ccaatccgct caccgaacct       180
     gaggaccgga tgctacagat tttattgtaa gtaccaatcc tcttttaata ccgcttcgct       240
     ttcctaccac aatgccacgt gacaatagca gtgaaattga gcagctcaag ctccaaatag       300
     ctgagcttac aaacataatc agcggcaacg ctaatgcata cagcgtccct gatcccatta       360
     aacagttatc ggaatttaac ggtaacaaaa aggaattaac aatttggctc gacgaagtcg       420
     accaattata cgatacattt aaaataaagg gccagaatgg tggacccgat accatgaatg       480
     cctactacgt gcaggcaata aaaaacaaaa tcgagggtga agcccgcgta acactatgcg       540
     caaacggcaa cccgacctcc attccggaga taaaaagagt gcttttgcag cactacggcg       600
     atcagcgcga tatcgccaca aatttgaact tactatttaa tatcagaaag ggtgacaaaa       660
     cccataataa gttttacatg gaaattaaag agttggaaac gagaattaag tccaacctgc       720
     aattaaaccc tttatcaact atagaattgc tagagaagat aacaataaca aaatacttgg       780
     ataatatcca agaaccacta gctagcatta taagaaccac taatcccagc aatcttgagg       840
     atgcgtatca atacgttacg ttgaatcaaa atgccgaaag gcgaaaacca gtgtacaagc       900
     aaaaaacgtt cagtgccccg caacaaacca gtgccagcag tgcaagtgca aataaattta       960
     ggaaacctga tgccgcctca cagcgacggt cgttccacca aagaccacgt atagaaacta      1020
     acaataccga ggaagtagat ctagtggaag acgaatatgt agaagaagag gaagttgaag      1080
     aagaagcaat tgaattggta gaagatgatt taaattttca aaaggttcgt gtaaagaacg      1140
     cgaagaccta aattttatac catacttcag atttccgacg actaagggct acctgaattt      1200
     tctgatcgac acaggagcca ataagtccta tattaatccg gaacacgtta aaaaggcttc      1260
     aatagctaaa catccatcga tagtaacaaa caaaaatgga aagtttacca tagataaact      1320
     ggtacacgca aatttgtttt cagaatcatt ctccgaaaca cttccctacc atttatttaa      1380
     atttcataaa ttttttgatg gtctcgttgg ctacgagaac ctagccaaga tgaaagccaa      1440
     aatcgattcc ggtaaacatc aacttgtcat tggagataca aggtatcaac tatcaaaata      1500
     cagtccgtgc tcgattaacc ttcatgagca atcggataac ttgcttgaga taagcaccac      1560
     atccgatggc acctttctca ttgaaaatga aatgaattta acaagcagcg tcaagttaca      1620
     acctggactg tatttagcca aaggtaaccg tgctaaagtt catttatcta gcaccaagca      1680
     tgtcaaggta aaggaactgc aacctttcga aaatgaacac ttcgttctta atcaaaacga      1740
     aacgcattgt aaattgaatt tccccgcgga tcacctgaac caagaggaaa agcgtgaatt      1800
     gataaaggct ttgaaaccat tcagagatgt atttttttac gaagagcaaa agttgacttt      1860
     tacacatgaa gtcaaacatc gtatcgaaac aagtgatgat aagccaatac accaaaaaac      1920
     ctacaaatat ccgtatcatc tgagaacgga agtttctgaa caaattcaaa aaatgctcaa      1980
     ctcgggcata ataagggaat catcttctcc gtggacttca cccatttggg tcgtccccaa      2040
     gaagctggat aactcgggca aaagaaaata ccggattgtc gtagactaca ggaagttaaa      2100
     tgaaaaaact cctgcagatc ggtacccaat cccggaaatt agtgaaatcc tcgaccggtt      2160
     ggaaaaagcc caatatttta ccgtattgga tttggccagc gggtttcatc aaatagaaat      2220
     tgacccgaag gacgtgccaa aaaccgcatt taatgttgac catggcaaat tcgaattcgt      2280
     tcgaatgcca ttcgggttaa aaaatgcgcc ggccacgttc cagaggctga tggattcagt      2340
     actccggaag catctaggaa ttcgatgttt cgtctacatg gacgacatca ttattttttc      2400
     gacgtcccta aaagagcata tcaaagatat ttcaatggtg ttagaaactc ttcgtaatgc      2460
     caaccttaag gttcagtgcg ataagtccga attccttcgg aaagaagttg aattccttgg      2520
     acacatcgtc acaacggagg gcgtaaggcc aaatcctcag aaaataaagg ctgttttaga      2580
     ctggccttta cctaaaactc caaaagagtt aaaatctttc ttgggaaccg taggatacta      2640
     tcggcgattt atcccaggtt ttgctaatat tgctaagccc ctcactagcc agttgagagg      2700
     aaagagcaaa ataataaatt atgagacaaa tgaattcgaa accgctttta caaaacttaa      2760
     acaaatcatg tcctcagact tgttactagt ttatcccgat ttcggaaaac catttatatt      2820
     gacgacagat gcttccaaca ttgctattgg agcagtactg tctcaattgg aagacggaat      2880
     ggaaaggcca atagcctacc tctcgcgtac actttctaaa gctgaggaaa agtattcagc      2940
     tacagcgaaa gaacttcttg ctatttattt ttctgcaaaa cggtttcggc catacttgta      3000
     tggaagacct tttgtaattt acacggacca tgaaccactt acgaaagaac tgaagttgac      3060
     cgatgccacg ggtagggtga cacgtcaacg actatatctt gaacaatatg atttcaaaat      3120
     catttataaa aagggcaaac aaaacgtagt agcagatggg ctgtcaagaa ttccacccag      3180
     tgaattaaat ttgcatgaac tgtcgaatga atgttttgat aatgacgaaa tatacgggcc      3240
     agaaattatc aacaaattta aaaatcaaat tataataagg gtgagtaacg acccctcgaa      3300
     aagctctcac atcatatgca aaatatttcc tggacaagtc cgccaagtat ttcatcagga      3360
     aacttatact aaagaaaatc ttactgacat tctgaaaaaa tacataaacc cttcaacaag      3420
     caacggaatt ttcgcaccag ctggaattat cagaacatgt gacgaaatac tcaagcagca      3480
     tttctctaaa cgccttaagt ttcactattc taatattctt ttaccagata tcatttcagg      3540
     aacggaccaa caagacttca tcgaaaaatg ccataacttt aatcacagaa actataaact      3600
     gacatacgag gaagcaagaa aatctgctta ctttcctggt atgttaggaa aaattaaaac      3660
     gttcatcaag aactgcggag attgcaaatt cgcaaaatac gaacgtaaac ctttcaaaat      3720
     tccgatttct agaagaatat atgaaggtcc ttttgaaaat gtttttatcg acgtctatat      3780
     taaagaacaa tataaatttt taacattagt agattctttt tcaaaattcg cgcaaatttt      3840
     ccaaatttca aatgaaacta cggacgagtt gatcagtact ctaatcgagt atttcaaatt      3900
     ctttggtttg ccaaaaatga tcacttgtga tcaggcacca ggatttagaa atccccgatt      3960
     cagagaattc ctagaacaac agggcatcgc attgcatttc gccagcaata gcaatgctaa      4020
     tggtattgtg gaacgctttc acaatacttt acttgagatg tatttggcga acagacaaaa      4080
     atttgagaac cttccattac ctgaaggttt agcattaact acctcactct acaacgactc      4140
     aacccatagc acgacgagcc ttaagcctcg agagattatt ttcggcaatt gttcttcttt      4200
     gaaccgagct gagattaatg cctcgaaact taggaagata cagactgcaa gagaccatat      4260
     aaaatccata gcagacaaac ataatagcaa attacccgta ataaataaag acgactacaa      4320
     gactcttaca aatcccattc tagtgaaagg gaaagcaaaa ccgagccctt atggtcatcg      4380
     ataccgtcaa gtagagattg ttaaccagac tgaaaagaca gtgacagacg gacaaaatat      4440
     aaaatcacac aaaataaacg taaagagaac ttaattgatt aatacttttc agattatgtc      4500
     tactgacgac gacgacacac gcggacttac taatacacga cgtagggaaa aacccattga      4560
     taatcattcc aataggtaca gccagaatca gcagcggtta cttgagaata gggcaccaca      4620
     ttaatttaaa tcttctcgca aatactattc aaaatttaga tacaacaatt caggcgaaaa      4680
     tctctgacca acacatgtta agttcgattg ttaaagtaaa atctaagaag cttcactcta      4740
     tgtttaaaaa attgagaccc tctaggcaga aacgatggga aagcttaggc cgtgcgtgga      4800
     aatatgtgtc tggtagtcca gatgcagatg atttggtaat tattaacagc acacttaatt      4860
     ctctcattga tcagaacaat aaacaggtca gaattaatag cgcactcgag atcagattga      4920
     aaaacattac cgaagctatc aactcaattg caaatattca gggcaatttt cagaacaaaa      4980
     ttatagaagg ctttgactcc gttaatttga ttttcaattt agatgagcta attgatcagc      5040
     tagaagtact agaggaagca gttacattgg cccgaagcaa catccccagt agccgcatca      5100
     tttcaccaga cgagataacc atagcccagg aattcctcaa gaacagcggt cttagaatga      5160
     gtctactgga taacatatta gatatttcca gtgcttacgt gctgtttggt aaggatgaaa      5220
     ttatctatac cctcaaaatt ccacgagtca aggagacaga gtaccaatta tgctacatag      5280
     aaccagtcat ttccaacaac catagaattc atttaactac aatgtattac ctgaagggac      5340
     cgaattcgtt cctatccagt acaccatgta caagatataa gaatgaatat gtctgcaaaa      5400
     gctctcaact agaaccacca ggtgaatgca tccaacaact agtcgctggt aaaccagcta      5460
     gttgtcccat cgaaaaagtc tacaaccagg acgtgattaa gagaataaac gatgccaaca      5520
     tcttgattag cgtaacgaac atcaccttga cgtcaaattg ttcgggacag ggacgagatc      5580
     tacaaggatc ataccttatc cagttctccg gttgtaccat caagctaaac aacgaagagt      5640
     actccaatag taatgttgac gtatcaccga aattatatct tccaacaacg ggacttacgg      5700
     taactccttc aaaagttatc tcatcaagca accgaggata attccacaat aacaagggcc      5760
     gacgaaatct ccgcagcagc aaaggatcgt gaaagccggg gacggctttc gagtagacgg      5820
     ggagt                                                                  5825
//
ID   Gypsy-348_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-348_;
KW   Gypsy-348_AA-I; Gypsy-348_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-209
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 208-208 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 209 BP; 60 A; 43 C; 54 G; 52 T; 0 other;
     agttaggaat aactgttagg tggattagcc aataggagca cgacgtggcg catcacgcca        60
     cgcggtcagg tgttagggca tggaatgcgc tagctaagca taataattca ataaaagcga       120
     cccggcatcg gagctcgccc tcttttatca cttgtcagtg taagtagttg gtttttaaaa       180
     acgttagccg gaaaaagaat tccctgact                                         209
//
ID   Gypsy-349_AA-I repbase;    DNA;    INV; 6071 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-349_;
KW   Gypsy-349_AA-I; Gypsy-349_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6071
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6071
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 180-180 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6071 BP; 2125 A; 1343 C; 1125 G; 1476 T; 2 other;
     atatatcgca acccacagat gttatttgga ctcacgtaag tttcacacat ttttttcttc        60
     ttttaagtga atacagtgca aacgcgtttc attcaaatgg ctcctaccac taggaccgat       120
     gagattgagc agctcaaaac gattgttaat gagcttaagg cgcagctctc agagcgtgcc       180
     agagatgacc catttgaaat ggacgatctt cggtccgagt tggccgaatt gcgtacccaa       240
     atggccatca ggaattcgca gggtggagat ttatttaaac tccctgaccc tttcaaattc       300
     ctgtccgaat ttacgggcaa taagaaagaa ctttcagctt ggctggaaga ggtcgatgac       360
     ctatataatg actttaaagt caaaactcaa aatgggggat actccctcag tagcctttac       420
     ataagggcga ttaaaaacaa aatcagaggg gaagctcgca cattattatg tgctaatggc       480
     aaccctaaca caattgacgg tatcaaaaga atactcgtcg aacattacgg tgacgaacaa       540
     gatttcacca caaatctatc tacccttttc cgcatgcgca agggtgatag gacccatgct       600
     cgtttttata acgagattaa agaaaccaat accagattga aagctaacct tcaatcaaaa       660
     cctcttacag gccacgaaat aattgaaatt atcacagtgg caaaatacct ggataacatc       720
     caggaaccac tgagttctat tattaggaac tcaaagccgc gaaatttaga agaagcatac       780
     caagcggtac tgctgaatca aaatgcggaa acacgaaata aaccccagta ctctaatcaa       840
     actaactcgg ggaaatataa accattcaga caaaatgcac atactgcaaa cgcgagtagc       900
     cagcagcaac cgcaatccaa tacctcgcaa cataaacaat ccacgtataa gaaaccagcc       960
     ttccagccga agccacgcgc tgaagcgcat aataacgagg tggaagagct aaatgaaccg      1020
     gagcccccta ttgaggttcc taccgaaaac gatgaacttg aatattccga tgaggaacta      1080
     aattttcaga ctgccaggag acagaaaatg aaaacgtgaa tttcattccc tatgtgcgtt      1140
     tcccgacaac aaaaggaatt ttaaatttcc tagttgatac tggcgccaac aaatcttata      1200
     ttaaccccca acatgtgaag aaggcaaaaa cagtgttaaa tccgtccgtt gtaaccaata      1260
     aaaacggaaa attctttatc gacaaagtgg ttcacgccaa tcttttctct gacagtttct      1320
     ccgagaaact gccatactat gtttttaagt tccacaagtt ctttgatgga cttattggat      1380
     acgaaaattt atcaaaaatg aaagctgtgg ttgacaccaa acgccaccat ttgacaattg      1440
     gcaataagtc atacgagttt tcaaaatact atccctcttc agtcaacttt catattcaag      1500
     agaactctgt cgtccccatt tgcaccacaa gcaatggcac atttttgatt agggaggaaa      1560
     taaatctatc tcctcaggtt acattgaaac ctggtttgta ttctgctgaa ggcaacaaag      1620
     ccatggttca tctttcaaac aaatccaaat caactgcaca gaaaatagac ccgttttgta      1680
     atgacgattt cgtagtgaga agcgagaaac cgtccaaact caactttccg agtgatcatc      1740
     tgaatgacga agagaaggct cgtctgattc agaccctgag tccttttagg gacgtatttt      1800
     ttcaagaggg taaaaaacta acctttaccc atcaagtaaa acataaaatc acgacctctg      1860
     atgacacccc tgtccatcag aagacgtaca agtatcctta tcacctacga caggtggtag      1920
     cggaacagat tcaaaaacta ctggaaacag gaatagttag agaatcttgc tcgccctgga      1980
     catcgcccat ttgggtagtg cccaagaaaa tagacaattc tgggcagcag aaatatagaa      2040
     ttgtaatcga ttacaggaag ttgaacgaaa aaactcctgc cgatcgatat cccatcccag      2100
     aaatcagtga aatattggac cgacttggca aagcgcaata cttcacggta ctggatctcg      2160
     ctagcggttt ccatcaaatc gagatcgatc ccgctgatat tccaaaaacg gccttcaatg      2220
     tagatggagg taaattcgag ttcgttcgaa tgcctttcgg gctgaaaaat gccccagcta      2280
     cgtttcaaag gttaatggac tccgtgcttc gaaagcactt aaatattaga tgtttcgtct      2340
     atatggacga tattataata ttttcgtgct cattagaaga gcaccttcaa gatataagga      2400
     aggtgttgca gactttaagg gaatccaact taaagataca gagtgataaa tccgagtttc      2460
     ttcggaaaga ggttgagttc ctcggtcacg tggtgactac ggagggggtc aaacctaatc      2520
     ccaagaagat cgaggccatt agaaactggc cactaccgag gagtcaaaag gaactgaaat      2580
     catttctggg aactatagga tactatagac gcttcattcc caaattcgct cacatcgcga      2640
     aaccaatgac tattaaatta cgaggtaaaa caaaaaccat agatgtcgac catgattatg      2700
     agaaagcttt cgaagagctt aagaagatca tgacgaccga taccctatta gcttacccta      2760
     acttcgatga accgttcata ttaacgacgg atgcatcaaa tgttgccata ggggcagtcc      2820
     tagcccagtt acaggatgga aaggagcgac ctattgcata cttatcccgt acactgagca      2880
     aagctgaaga gaaatattcc gccacagcaa aagagttgct gggtatctac tttgcagcga      2940
     aaacttttag accatatctc tatggaagag agttttccat ttataccgac catgagcctc      3000
     ttaccaaaga gctaaaatta accgattcaa ctggaagagt caccagacaa agactctacc      3060
     ttgaacaatt tgacttcaaa ctaatttaca aaagaggtaa acagaatgtc gttgctgacg      3120
     gactgtctag aatccctcgc agtgaactta ataatcaaac cgttctcgaa aatgaatttt      3180
     tcgagaacga tcctgcgtat gaccccgaaa taatcaacca atttaaatta cagataatcc      3240
     ttagggtcag tgatgacaac aagaaaagtc cccatattaa catttcaata tttccaggat      3300
     atacaaggca tatattccat caaaaagaat ataccgagga ggatctcttg aggattctga      3360
     aaacctgcct agtcccagga agcaataacg gaatattcgc tcccgtcaac atcgtcctat      3420
     cctgtaaacg gataatctca aataacttta accccggcat gaagatccat ttctcaaatt      3480
     taaaacttcc ggacataatt tccgagaaag aacagaccga cttcattaat aaatgtcata      3540
     acttcaacca cagaagttgg aaaattacgt acgaagaagt aaagaagtca gtgttcttcc      3600
     ccggaatgat ccccaaaatt aagaactttg taaaaaactg tgaagattgc aaattttcga      3660
     aatacgagcg aaaacctttt aagattgaga tcgcaagacg tatgtacgaa aaaccactcg      3720
     aaaatatctt cattgatgtt tatgttaaag agggtgaaaa atttctgacg ctcgtcgact      3780
     ctttctcaaa gtttgctcag atttataaaa tttgcaacga aacatcggaa gagcttattg      3840
     aaaccctaac tgaatatttt aaaacattcg gaataccaaa agtgatcaca tgtgatcaag      3900
     caacttcatt tagaagccaa aattttagaa cattcctgga aacacacggt gttgccattc      3960
     attacgctag cagcagcaac agtaatggca tcatcgagag gttccacaac acactactag      4020
     aaatgtatat ggcaaacagg aagaaggtgg acgagctaac actctaccag ggactatctc      4080
     tgatcacagc catttacaat gacagcaaac actccactac gcaactaact ccccgacaga      4140
     tcattttcgg taactcgacc tcactaaatc tcgacgacat aaatttaatg aaacaacaag      4200
     caattatgac ggctagggat aatatttctc aggaagttcg gagacataac acaaaacaag      4260
     ctacaggatc caaagcgtac gaaaacatta ggtctcaaga aatcttagtt aaaacaaaag      4320
     ccaagccgtc tccataccat gatagataca ggataataga aattaaagaa caggacaaaa      4380
     agacgctgac ggacacaacg aatatcaaaa tacataaaaa acacattaaa aaaccattst      4440
     aatgatgaga gctcactctc cctctatttg atttcagatt atgtatcttg attcaaacga      4500
     cctggaccga cataagagta cacgacttaa accgtaaccc tatcgccatc atacctctag      4560
     gagaagccag actaagtaac agttatctac gaatagttca tcccataaac ttaaaacaat      4620
     taggagacta cattgcagaa attgacgatg tggcgcaaga cgctatcaaa aacgacaaac      4680
     cgcttagtaa catcctaaaa attaaacttc atagactgca tgcaattata tcgaaagtaa      4740
     agcccgcgaa caggaataaa cgttgggaaa ctctaggaaa ggcttggaag tatatttcgg      4800
     gaagccctga cgcggaagat ttaaaaatta taaacgcgac aacaaattcc ttgattgatc      4860
     aaaackatag acaaattaga atcaatatag caatcgaaca tagacttaaa aatattacag      4920
     aaaaactcaa ttccttaatc aaatatcagg acaacttgac agcaggagct ttagatggat      4980
     ttgactcggt aaatataatt ttcaacttag atgaacttat ctatcagcta gaaatcatag      5040
     aagaagcaat caccctagcc aggaaaaaca tccccagcag ccgcatcatc agctctcgcg      5100
     aactactcac cgccaagcag tttctttctc acgaaggcct cgagcaagac atgctagaca      5160
     acgtactgga tatcgccagt gtgtacgtaa tctacagcaa agagatgatc atttataccc      5220
     tcaaaatccc taggatcaag aacgttgttt acaaactgaa ctttatcgaa ccagttgtac      5280
     agaacaatcg taagattcaa ctaagcgcaa atttctacct cgacggaccc aaaccgtatc      5340
     tttcaaaaac tccatgttct aaaagcaaga acttgtttat atgttccagc tcccaagtag      5400
     aaccattaac agagtgcatt gaacaactga ttaccggaaa accagcctac tgcaatgtag      5460
     aacggacgta cggaaaaaat ttcatcaaaa gagtgaacga cgcaaacatt gtggttaatg      5520
     ccgcagacct catcatgtca tcaaactgtt cggctcagga acgtaaactt caaggatcgt      5580
     ttctcataca atttcaacag tgtacactga agctcgacaa cgaggaatac gataacagcg      5640
     tttacgaagc gcaacctcaa tcgttcatcc caactacagg cttgaaggta actccagtta      5700
     aattgataaa tcgactccca ttggagcttt tacaggagca gcacttggag caccgggaca      5760
     acatagcaca cctcaatctg acatccaaca acattcattg gaaagttaat ttattcgggt      5820
     ggctgtcttt cggatctttc tcaaccctga tgatcatcat tattattgcc atcatcatcg      5880
     gagtcctgag gaccgctatc tggaggggaa ttcagacatc agcatctcaa caatctgcac      5940
     atgctaaaca acaaccggaa gaaggtaaat catccgaggc cagcacagat gttacttcga      6000
     cgaggtatcc aaggttgatt ccacaaccgt aatttagaaa gccgaggacg actttccagc      6060
     agacggggag c                                                           6071
//
ID   Gypsy-349_AA-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-349_;
KW   Gypsy-349_AA-I; Gypsy-349_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-272
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-272
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 209-209 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 272 BP; 83 A; 50 C; 66 G; 73 T; 0 other;
     cgttaggaaa atcctgctag gtgaattaac gaataggagc agttggcgcg catcgagtag        60
     aatcacgcca cgcggcaagc caatcaggtg ttagggcgct aagaatgcgc taggtaagca       120
     taattagcaa ataaaagtga gccagcagcg tggctcactc tctttcttgg tcaagctgta       180
     atagtaggta gttccataag taacctgtgt gtgaataaat cttgtgtagt ttagttttta       240
     aaaactaatt cgttacgtga aaatccctaa ct                                     272
//
ID   Gypsy-34_AA-I repbase;    DNA;    INV; 5976 BP.
XX
AC   AAGE02026431;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_AA_;
KW   Gypsy-34_AA-LTR; Gypsy-34_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5976
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026431; Positions  173201  179176.
XX
CC   Positions [2856-3392] - Reverse transcriptase
CC   Positions [4781-5248] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2280..4109
FT                 /product="Gypsy-34_AA-I_2p"
FT                 /translation="MRKSGEDGIIFAKVAGLPCSFLIDSGAQVNTFTEELF
FT                 RKLISDPRYSSEVFNVQNQSDRSLKGYASKGDIDVVATFHATLFISNDRPT
FT                 LLEKFYVVKEIRALLSRSTASRYSVLMLGLQVPIQQRDVEDNRSLYAGEIA
FT                 AITTDVIFPKFNIPPVKIHYDKSKPPCRNIFFNIPVSVKPIVEERIHGLVR
FT                 ANIIEPVEEGMDTSFCSSMLVVPKGKEDIRLVIDLRGPNRYIYRTPFAMPT
FT                 LEKILAELNGAAWFSTIDLSNAFFHIELDEESRHLTNFCTEFGMFRCVRMP
FT                 FGLCNAPDVFQETLQRKILGGCKGCRNFQDDILVYGSTKSEHDENLAVVLS
FT                 RLSSHNVKLNDDKCVFGSQRVNFLGFDLTPERWLVEDEKLSAIQQFRTPSS
FT                 CSEVKSFLGLITFVDKFILHRATKTENLRLLASSDSFYWNDSEEEEFSYLK
FT                 NEALNTIRRLGYYSPLDPIELFVDASPTGLGAVLAQYNSDGKPRIIACASK
FT                 VLSPSEQRYPHTQKEALAVVWGVERFSYYLLARPFVIRTDAEANQYIFNSD
FT                 HRLGKRAVTRAEGWALRLQPYDFSIQRVPGSENVADVLSRLIPESQKAESF
FT                 EENEEKHYLYHR"
FT   CDS           4409..5782
FT                 /product="Gypsy-34_AA-I_1p"
FT                 /translation="MEITWSDIELASENDEELRLVREAMKRKGWPTELRAY
FT                 EAQRKKLHHLGSLIFANERVVLPRDLREKALSSAHGGHVGEMAMKRIMRQF
FT                 FWWPKMSKEVSKYVKNCETCSLLAKRNPPVPLVSREFPEGPWEILQIDFLS
FT                 VPNFGTGEFLIVVDTYSRYLAIVEMRSIDADSTNNALNEVFRTWGLPIILQ
FT                 SDNGPPFQSASFVKFWEEKGIKVRKSIPLSPQSNGAVERQNQGIIKVLAAS
FT                 RLDGSNWRQALQQYVHKHNTLVPHSRLGVTPFELMVGWRHRGTFPSLWSTS
FT                 RNEKIDLEDIRERDAETKLSSKKYADRVRGAQESDIQVGDVVLLAQAKKSK
FT                 TDPVFSSERFKVVARDGAKVVVVNQTGVQYARNIQEIKKAPGFVIQPTQPV
FT                 PAGKAADDEAEIVEPVTAEETAASPSSENADLVMQPDGHRSLRHRKLIARP
FT                 RRFDDNFLYYVFQ"
XX
SQ   Sequence 5976 BP; 1744 A; 1173 C; 1478 G; 1581 T; 0 other;
     tggcgcagtc ggcaggtatg tattgatcaa atttaaacaa aataactttt atttggggcg        60
     agtaggactc cataaaaaaa tgaataaata cagagcgagt aggtctctgt gaaaaatggt       120
     gcgagtaggt ctccatttcc gaccaaatga agtccagagc gagtaggtct ctgcgtaaac       180
     tggagcgagt aggcctccat gaaaataata atatatacag agcgagcagg tctctgtgag       240
     aaatggtgcg agtaggtccc catttccgaa aaaaatgaat gaatacagag cgagtaggta       300
     tctattcgaa atggtgcgac taggtctcca tttccgtcaa aaaaaaaaaa gaaaaagcag       360
     agcgaatctg cgtttgttag ttaattcaat gagttgatat tcgagaagtg acatgaaatg       420
     gatcaagtaa tcaaagagac ttcaaatgtt tatgaagata gagcggacag gactctacaa       480
     gtatgttttt tttcgttttg gttacaggga aatatgtgcg agctccaaag gaaatggatg       540
     tatcggattc aagcgggttg tctaaagagc ttgaagaaga aagagcgatg agtacgcgtt       600
     tggcgagtga gctggaaaaa tcacgcaagg aaaatgagga gttgaaagcg attatgtacg       660
     ccaggagcaa tgtccgcgat ccattgagcc caagcgtgga tttcgaagct ggaaacggat       720
     tttgcagtac cagacgaatg gctcccaatc ccattttgac gaatagtatt gaagaatcca       780
     gattcctgtc ttcaatgaat catttatcat tggcatcaat caacgttcct gagtgtacag       840
     cgcctgaggg ggatgatatt catcgccaaa ttttcgagca gtggaaggat ttgttactgg       900
     attcgatgaa gctagctgga atcgatgatg aagcgacgat gtttacagta ttcaaggtta       960
     aggccggatc gcgcctgctg ggaatttttc gaaatacgaa atcatctact gatgcaccgg      1020
     atccagagga gcggcctttt tctaacgcta tgcatcgctt gcggtcttat tttggctcgg      1080
     gttcagatgt catgctgatg agacgcaggc ttgctcttac cgttcaaaaa tccgatgaaa      1140
     ctgacctcag tttcataaca agagttggat ccattgctcg attgtgcgaa ttcagcgagg      1200
     atagagtttg aagaaattgt tgcgacggtt gccgagcacg ccaggagccg ggatgtgcga      1260
     acaaccgcac ttaaattgct cagccgtaaa ggcagcttca cggacttggt tgataaagtt      1320
     cgtgaattag aagcgattag actgaacgaa gagtacgtga accagaagct tgcgatgcag      1380
     caaccggcgt tgattgctcc agtatcatcc tctttccact ccgttggaaa tcgtcagcag      1440
     cgacaatacg tcggttttcg tggaaacaca acccagcgag gatttccatt ccgtcgtggc      1500
     ggcgggcgtg taccaagagg taaagagccg tacactggtg gagcgttccg tagctcagat      1560
     ggcaacaggt gttggcgctg ttacagcatt tttcattcgg cggacgactg caaagccaag      1620
     gataagtggt gcaatcattg tggagctgtg ggacactttc ttcgagcttg cccaaaactc      1680
     gtttccggtt catttcgtgg ccaaatgaaa cgcccgcaag cagtggacca ttcggaagta      1740
     ccaccgtaca aggttgcttt tgtcgataaa gcagaagagc ctaaggcaga agaagaaacg      1800
     gtaagtgtca gtcagtcaga tgagtaattt gtttatgatt tgtatgcgta gagaatatgc      1860
     gatactattg aagaaaggaa cagttgaagc tatatagcta taatgtaatt tgaagtttcc      1920
     aaataaaatg tccaatgagt aagaattaca gaaagacatc tggtatttta ttacacagga      1980
     agcaaacgcg agggcaacca aagttgattc tcgccaactc ctctcacgta gtcctgattc      2040
     gatattggtg ggccaagcag aaacggtttc aatgcactca gaattgtcct cagctatatc      2100
     ctttgttgag tcttgccaag cagtagtgag gagtgatgaa gtcattgaag ctggaagtat      2160
     aaatattgta agtacatttt agtcgaaggt tgcttatgag taataattga tacatatata      2220
     ttataattca tcagcttgat cgttctacaa caaaggtgtt tggcgatgcg tcatacccca      2280
     tgcggaaatc tggagaggac ggcataattt tcgctaaggt agcaggattg ccgtgttctt      2340
     tcttaattga ctcgggagcg caagttaaca cttttaccga ggaattgttc cgtaagttaa      2400
     tctcggatcc caggtacagc agtgaggtat tcaacgtgca gaaccaatca gatagatcgc      2460
     taaagggtta cgcttcaaag ggtgatattg atgtggttgc tacttttcat gcgactctgt      2520
     tcatctcgaa cgacagacca acgctgctcg aaaaatttta cgttgttaaa gaaattcggg      2580
     ctcttctaag cagatcgaca gcgtctaggt atagtgtgtt gatgttggga ttgcaggttc      2640
     caatacaaca acgtgatgta gaagacaatc gatcgctcta tgctggagag attgcagcta      2700
     ttacaactga tgttatattt cccaaattca acatccctcc ggtgaaaatt cactatgaca      2760
     agtcaaagcc gccctgcagg aatatttttt tcaatatccc tgtatctgtt aaaccaatag      2820
     tagaagaaag aattcacgga ctggttagag cgaacattat tgaaccagtg gaggagggaa      2880
     tggatacatc attctgctct tctatgcttg ttgtgccgaa gggcaaggaa gatattcggc      2940
     ttgtcataga tctgaggggc ccgaatcgct acatctatcg aacaccgttt gcgatgccca      3000
     cgttggaaaa gatattggca gaattaaatg gtgcagcatg gttttccaca attgatttgt      3060
     caaatgcgtt cttccacatt gagttggatg aagaatcacg gcatttaaca aatttctgca      3120
     ctgaattcgg catgttccgg tgcgtacgaa tgccatttgg attgtgtaac gcgccagacg      3180
     tgtttcaaga gacgctccag aggaaaattc ttggaggctg taaaggctgc agaaactttc      3240
     aagacgacat actggtgtac gggtcgacta aatctgaaca cgatgaaaat cttgctgtgg      3300
     tcctctctcg attgtctagc cataacgtta agcttaacga cgacaaatgc gtctttggca      3360
     gccagcgcgt aaactttctt ggcttcgatc taacgcctga aagatggttg gtggaggatg      3420
     aaaagttatc agctatacag caattcagga cacctagcag ctgttccgaa gtaaaaagct      3480
     ttcttggatt gataacattc gtcgacaagt ttattctgca ccgggcaact aaaactgaga      3540
     atttgcgact attggcatcg tccgatagtt tctactggaa tgatagtgaa gaagaagagt      3600
     tctcatacct aaaaaacgag gcgttgaata ctatcaggcg cttgggttat tacagcccgt      3660
     tggatcctat cgagctcttt gtcgatgcct ctccgacggg gcttggtgca gtactagctc      3720
     aatacaatag tgatgggaag ccccggatta tcgcgtgtgc atccaaagtg ctttctccct      3780
     cggaacaacg atatccacac actcagaagg aggccctcgc ggttgtctgg ggtgtggaac      3840
     gtttcagtta ctatctgttg gctaggccgt tcgttatacg aacagatgca gaagcgaacc      3900
     aatacatctt taatagcgat caccgtttgg gaaagagagc cgttactcga gctgaagggt      3960
     gggccttaag gctacaacca tatgattttt caatccaacg tgtgccaggc agcgaaaatg      4020
     tagcggacgt gctttcacgg ctgatacctg aaagtcaaaa agcagaatct tttgaagaga      4080
     atgaagagaa gcattacctg tatcacagat aacagatgtt gaagtccgat tgtaaaactg      4140
     tgtaagacaa tcaacggtca ttttgaatgg caacacaagt agcaacattg tggggcgctg      4200
     tcatcgctca gttcccatga cgatgtcagt ggtgaatatg aaatatttca agatacttat      4260
     attcaccact gattgacgca attcgttgtg tggcggcgct agtgattgcc ggcagtttca      4320
     atttgaatat ttacacaggt tttcactaaa tttttgttct agcataaaca tctgttatct      4380
     gtgcctgtat gcactagata ctggttgcat ggaaataaca tggagcgata tcgagttggc      4440
     atctgaaaat gatgaagaat tgcgtttggt gcgagaagca atgaagagga aaggatggcc      4500
     gaccgagttg agggcatatg aagctcaaag gaaaaagctt caccatctag gatcgttaat      4560
     ctttgccaat gaacgtgtgg ttctaccacg agatcttcgt gaaaaagcac tttcttccgc      4620
     ccatgggggt catgtgggtg agatggccat gaagcgtata atgcggcaat ttttctggtg      4680
     gccaaaaatg tcgaaggaag tttcaaaata cgtaaagaat tgtgaaacat gttcactttt      4740
     ggctaagcgc aatcccccgg ttcctttggt atctagagag tttcctgaag gtccttggga      4800
     aattcttcaa attgattttt tgtcggtacc caacttcgga actggtgaat ttttgatcgt      4860
     agttgatacc tattcacgat accttgcgat tgttgaaatg cgatccatag atgcagatag      4920
     taccaacaac gcactaaatg aagttttccg cacctggggg ttaccaataa tactacagag      4980
     cgataatgga ccacccttcc aaagcgcttc gtttgtaaaa ttttgggaag aaaaaggcat      5040
     taaggtaagg aagtccatac ccctgagccc acagtccaac ggggctgtcg aaaggcaaaa      5100
     ccagggaatt atcaaagtgc tggcagcttc aagactggac ggatcgaatt ggagacaggc      5160
     acttcaacaa tatgtgcata aacacaatac tctggtaccg cattccagac tcggcgtgac      5220
     tccctttgaa ttgatggtag ggtggcgtca tcgtggcaca tttcctagcc tatggagtac      5280
     ttcccgcaat gaaaagattg atcttgagga tattcgagag cgtgacgcag agacgaaatt      5340
     atctagcaaa aagtacgcag acagagtacg tggtgcacag gaatcagata tccaagttgg      5400
     tgatgtggtt ttgcttgccc aagcaaaaaa atcaaagacc gatccggtat tctcttctga      5460
     acgcttcaag gtggtagcca gggatggagc aaaagttgta gtggtaaatc aaacgggcgt      5520
     tcaatatgcc agaaacattc aggagattaa gaaagctcct ggatttgtaa tccagccaac      5580
     tcagcctgtg cctgccggaa aagcggcgga tgatgaagcg gaaattgttg agccggttac      5640
     tgcagaggaa actgctgctt ctccttcgtc agaaaacgcc gatctagtga tgcaacctga      5700
     tggacatcgg tcactccgtc acagaaaatt gattgctcgg ccaagaagat ttgacgataa      5760
     tttcctttac tatgttttcc aatagtgtct gtaatgcttg gcggcgtact ttactctggt      5820
     gacactgcgg gaggttgacc aaagtttttg ttccttacta tggaaaccat tagagcaaag      5880
     aggtacttcc gacgtacttt gatttgaact gcctcatttg cgccctcaaa gttacctgaa      5940
     aacgaaacat tcaaacagaa tagagaaggg aaaaga                                5976
//
ID   Gypsy-34_AA-LTR repbase;    DNA;    INV; 744 BP.
XX
AC   AAGE02026431;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_AA_;
KW   Gypsy-34_AA-I; Gypsy-34_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-744
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026431; Positions  172457  173200.
XX
SQ   Sequence 744 BP; 245 A; 92 C; 150 G; 257 T; 0 other;
     tgtagtgaat aagagcacta gcgataaaat aatgtaaata attactcacc tgtttccaaa        60
     tatatttcgc ttcctcactt cggacttgtt tttttatttt ggttttgacg aaatgcaaat       120
     gtaaataaga attctactat tggatttgta tgctattcca attagaatat gttggtattg       180
     gtttcggatg atctgtcaaa tgaatgcacg gaaaaagaag ttgtgagata atcaatttcg       240
     aaaaatcgaa cacggaaatt tattgttgtt acacgctaat ttatttccac tctttgtgat       300
     aacttgaaaa attaacgaaa attgttggaa aatgtatttg tgttttggag tatcttgatt       360
     tctgtagaat ttggctcatt aaaatagatt attgtaatat aatgtattac aagtgatgtg       420
     aacataggtt attaccaact tcattctgag ggtaaataaa aattcatttg tttgcgtttt       480
     acatgtaaaa tttgttgagt gtattctgaa aacgcaaact gttgaggggg tatgaaagat       540
     atggaacgca gagagaaaaa cgcaaactat aaaacgcaaa aggatgagag gaagtgagtc       600
     tggttggagg gaaactggat gctaacgaat tgatcgtcat tctgtgaacg atttttgaag       660
     cgtacggttc gacctttttt tgtaataacg tttttttata ctattttcgg ccttgagtgg       720
     aaaaatcaac ccggagatac taca                                              744
//
ID   Gypsy-34_AnFu-I repbase;    DNA;    INV; 4119 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4119
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2918-2918 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1032
FT                 /product="Gypsy-34_AnFu-I_1p"
FT                 /translation="MNPESESSKVDVTQSAKMNPESESKNEIATPQLQVLK
FT                 INYPAFDGDDVDMWFVCLEAAFEVNGIKSDKTKFNALIVALGTRAKHVYST
FT                 ISRCSEMTTQDRYTTLKTDVIAHFHPSETKRISTLLAGVTLGDQKPSSLLS
FT                 QMRRTGGAGCSDKILANIWVRALPPTVRSILAAMSTASLDEQAKVADKIME
FT                 APKNEIDSVQDTSSTHQQSSLEAQVAALTKKLDDLLREQHRRPWNRRDSHP
FT                 RRYNSHHRSQSRERGPFICYYHRRYGNAAKKCENQRNPEKMCQYSPVPKN"
FT   CDS           981..4106
FT                 /product="Gypsy-34_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KPTQPRKNVPIFSGSKKLSGVQPSCTKLKQIDRIHIL
FT                 DQATHQNFLIDTGADVSVIPPTLKERDNPSTKHLFAANGTKIDTFGTKRLT
FT                 LNIGLRRPFVWIFTIADVKSPIIGADFLSHHDLLVDTRRNKIIDNTTRLEI
FT                 TNISSVSEPVIKSYDSTSPFAEILSEYKDITMLNVNRKQTKAKTVHQIITT
FT                 GQPVFCRPRRLPIDKLEAAKAEFRFLMEQGICQPSKSSWASPLHLVKKTDG
FT                 TWRPCGDYRNLNAITVPDRYPIPHIQDFSNILYNKTIFSCIDLQRAYHQIP
FT                 VAIEDIPKTAITTPFGLFEFKYMTFGLRNAGQTLQRHLHDILGDLDFVFPY
FT                 VDDLCIASSSIAQHKEHLRQVFQRLRENELAINPGKCQIGLQEVTFLGHII
FT                 TAKGIKPSKIKVEAIINFPQPTTAKQLKRFLGTINFYRRFIPHAAKNQQIL
FT                 HNMMQGNIRNDNTILTWDEDTTKAFNQCKQDLATETLLAHPCADAKLALEV
FT                 DASGNAIGAVLHQIRNNERQPLAYFSRKLSESKQKASTYDRELLAIYEAVK
FT                 YFKDHLIGREFCIFTDHKPLVTAFQQRPERASPTQQRQLSFISEYTTDIRH
FT                 ISGAKNHVADMLSRLEAIDSQPIDFESVAVKQQTDPELQHLLSDPNTSLCL
FT                 KTFKTHLASTPIFCDISTQKIRPFIPKEFRQQIISKFHSTSHPGIRSTTKL
FT                 VSDSYVWPAIRRDCKHFVMHCIPCQKSKITRHNKSPIEHIAMPDNRFSHIH
FT                 MDLIGPLPPSDGNQYCLTIIDKFTRWPEVMPIPNITAETVAKSFVNGWISR
FT                 FGVPSNVTTDLGRQFESELFRELLHLLGINHLRTTPYHPQANGHVERMHRQ
FT                 LKTALKCHNSSSWTAALPIVLLGMRTSCKEDIGSSVAELTYGTSLRLPGEF
FT                 FASDENTNIKPTTDFVENLKKTMAKIKPTSTSHHSTQRPFVQKTLESCTHV
FT                 FVRSGAIKPPLTPPYDGPYRVIQRKKKYFIIDIKGKKSSISIDRLKAAFVH
FT                 TEQQQVKTNSSPPDPCATTTTSSGRHVRIPARFLKT"
XX
SQ   Sequence 4119 BP; 1381 A; 1017 C; 764 G; 956 T; 1 other;
     ttggtgaccc cgtgtgaaaa aaaaacagtt tcagtgctcg tgcgtgtgca aaaacgaaac        60
     acttaccgtg aaaccgtgta ccgcgccaaa tcggaaaaac cgtgtgctgt tccgtcaaaa       120
     cgcamtcaca aaagcaaacg catacacgta tacgcaaaaa tgaatccgga gagtgaatca       180
     agtaaagtag acgtcaccca aagcgcaaaa atgaatccgg aaagtgaatc gaaaaacgaa       240
     attgctaccc cgcagttaca agtgctaaag ataaactatc cggcgttcga cggcgatgac       300
     gtagacatgt ggtttgtttg cctcgaggca gcgttcgaag ttaacggtat taaatcggac       360
     aaaaccaaat tcaacgcact catcgttgca ctgggcactc gtgcgaagca tgtatattcc       420
     accatctctc gatgcagtga aatgacaacg caggatcggt acactacact gaaaaccgac       480
     gtaatcgcgc atttccatcc atccgagacc aaaaggattt ccactttgtt agcaggggta       540
     actctcggtg accaaaaacc cagttcacta ttatcgcaga tgcgacgtac aggtggcgcg       600
     ggatgcagtg ataaaatact ggccaacata tgggtgcgag cactacctcc gacagtccgt       660
     tccatccttg ctgccatgtc aacggccagt ctggacgaac aagccaaggt tgctgataaa       720
     attatggaag ctccaaaaaa cgaaatagac tctgtacaag atacatcatc cacccatcaa       780
     caatcatcac tcgaagcaca agtcgccgca ttgacaaaga aactcgacga tcttctgcgc       840
     gaacagcatc ggcggccatg gaatcgacgc gacagtcacc cgaggagata caatagccat       900
     caccgcagcc agtccagaga acgcggcccg tttatttgtt attaccatcg gcgctatggt       960
     aatgcagcca aaaagtgtga aaaccaacgc aacccagaaa aaatgtgcca atattctccg      1020
     gttccaaaaa actaagtggt gtgcagccca gctgcactaa actgaaacaa atagaccgta      1080
     tacacatttt ggatcaagct acacatcaga atttcttgat cgatacaggc gcagacgttt      1140
     ccgttatccc gccaacgtta aaggaacgtg ataatccttc aacgaaacac cttttcgcag      1200
     caaacgggac aaaaatagat acatttggca caaaacgtct tacacttaat attggcctgc      1260
     gtcgaccatt tgtctggata ttcacaatag cagatgtaaa atcaccaatc attggtgcag      1320
     attttttaag tcatcacgat cttttggttg atacacgacg aaacaaaatc atcgataaca      1380
     ccacacgttt agaaattaca aacatcagca gtgtttccga accagttatc aaatcgtacg      1440
     attcaacatc accatttgcc gaaatattaa gtgagtacaa agacataacc atgcttaacg      1500
     ttaatcggaa acagacaaaa gccaagaccg ttcatcaaat catcactact ggccaacctg      1560
     ttttctgtcg tccacgtcgt ttgcccattg ataaactgga agcagcgaaa gccgaattta      1620
     gattcctaat ggaacaagga atttgtcagc catcgaaaag ttcttgggcc agcccattac      1680
     atctggttaa gaagactgat ggtacgtggc gcccatgtgg tgactacagg aatttaaacg      1740
     cgattacagt ccctgaccgg tatccaatac cacacattca ggatttttca aacatcctgt      1800
     acaacaagac aatattttcc tgtatcgact tacaacgcgc ttatcaccag attcctgttg      1860
     caatagaaga tattccaaaa actgccatta ctactccatt cggcctattc gaattcaaat      1920
     atatgacgtt cggactccga aatgcaggtc aaacactaca acgccatcta cacgacatat      1980
     tgggagatct tgactttgtt tttccgtacg tggatgatct ttgcatcgca tccagcagca      2040
     tcgcacagca taaagagcat cttcgtcaag ttttccaacg tctaagggag aatgagctgg      2100
     ccatcaaccc aggcaagtgt cagattggtt tacaagaagt tactttcctc ggtcacataa      2160
     tcacagcaaa aggaatcaaa ccatccaaga tcaaggtaga agccataata aatttcccac      2220
     aaccaaccac agccaaacaa ttaaaacgat ttctgggaac aataaacttt tatcgtcgct      2280
     tcatacccca tgcagcaaag aatcaacaaa tacttcataa catgatgcag ggaaatattc      2340
     gtaatgataa cacaatatta acatgggatg aagatacaac aaaagctttc aaccaatgca      2400
     agcaggattt ggctacggaa actttactcg ctcacccatg tgcggatgct aaattggcgt      2460
     tggaagtaga cgcatctggc aacgcaatcg gagcggtgtt acatcaaatt cgtaacaacg      2520
     aacgtcaacc attggcgtat ttctctcgta agctgagcga aagcaaacag aaagcaagca      2580
     cctacgatcg agaacttttg gcgatttacg aagcagtgaa atattttaaa gatcatctca      2640
     tcggtcgtga attctgcata tttaccgatc ataaaccact ggtaacagct tttcaacagc      2700
     gtcctgaacg tgcaagcccc actcaacaac gccagttgag ttttatcagt gaatacacca      2760
     cggatatcag acacatatcc ggcgcaaaaa accatgtagc agacatgtta agtcgtttag      2820
     aagccatcga tagtcagcca atcgatttcg aaagtgtagc agtaaagcaa caaacagatc      2880
     cggaactaca acacctcttg tctgacccga acacatcgct ctgtttgaaa acttttaaaa      2940
     cacacttagc ttcgacgcca atcttctgtg atatatccac ccagaaaatc agacctttca      3000
     ttccaaaaga gtttcgccaa caaataatat cgaaattcca tagcacatct catcccggca      3060
     ttcgatcgac aaccaaacta gtatccgact catacgtatg gccagcaata cggcgtgatt      3120
     gcaaacattt tgtaatgcac tgtattccgt gtcaaaagtc aaagataact cgtcacaaca      3180
     aatcaccgat cgaacacata gctatgccgg acaacagatt ttctcacatc catatggatc      3240
     ttattggtcc gttaccacca tccgatggga atcagtattg tctcaccata atagacaaat      3300
     ttacaagatg gcccgaggtt atgccgatac caaatatcac tgctgaaaca gtcgcgaaat      3360
     catttgtcaa cggttggatc tccagattcg gagtaccaag caatgtaaca accgacttag      3420
     gcagacagtt cgaatccgaa ctttttagag aacttctcca tcttcttggc atcaaccatt      3480
     tgcgtactac accgtaccac ccacaagcca acggacatgt agaaagaatg catcgtcaac      3540
     tcaaaacagc tttgaagtgc cacaacagtt ccagttggac agcagcatta ccaattgtgc      3600
     tactcggaat gcggacgtct tgcaaggaag acataggatc atcagtagca gaacttactt      3660
     acggtacatc gcttcgacta ccaggagaat tttttgcctc cgacgaaaat accaacatca      3720
     aacctacaac agatttcgtt gaaaacctaa aaaagacaat ggcaaaaata aaaccaactt      3780
     caacttctca tcattctaca caacgaccgt ttgtacaaaa aacattagaa tcctgtacac      3840
     atgttttcgt tcgaagcgga gcaattaagc cacctttaac tccaccctac gatggaccct      3900
     accgcgtcat tcaacgaaaa aagaaatatt tcataataga catcaaagga aaaaaatcat      3960
     ctatctctat cgatcgtcta aaagcagcgt ttgtacatac agaacaacaa caagttaaaa      4020
     caaattcatc accaccagac ccttgcgcta ctaccacaac atcatcagga cgtcacgtaa      4080
     gaatcccggc tagattctta aaaacatagg ggagagtac                             4119
//
ID   Gypsy-34_AnFu-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-320
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2846-2846 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 320 BP; 115 A; 84 C; 63 G; 58 T; 0 other;
     tgtggcgaaa cacaacacaa caggcaccaa gcaacaacaa caacaacaca acatttcttc        60
     ggaatattag ctgcaatagt cgacacacca tacaatagtg cccaacgggt tttcaccaga       120
     agcgctgcag acaatgctcg gttccgggga aatttggcag cgctaagcaa cgtccgtaca       180
     cacgtgcccg tgtcaggata cgacagtcga tgatcacccg ctcaccagaa cggacctcgc       240
     gaacgcgata cacaaagtga acgtaaaata atatacatgt gaatagtcaa ataaatatac       300
     ccacaaataa attggctata                                                   320
//
ID   Gypsy-34_AnMe-I repbase;    DNA;    INV; 4446 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4446
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6846-6846 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           202..1173
FT                 /product="Gypsy-34_AnMe-I_1p"
FT                 /translation="MTDPAPAPVMVAPAMAAXHSPAXLQPAPIXRQPKLEE
FT                 AEIASXYAEIRFPEFDSEDVETWFVCLEAAFYVNNVASDKHKFNAVIVALG
FT                 TRAKFLHAAXAKCNKSTLADRYSTIKKSVIDFFLPSENQRLTSLLSGVSLG
FT                 DRKPSMLLSEMRRMGGEGCSDSILSNIWLRALPTTVRSIIAAMPSASLDDQ
FT                 ASVADKILEAPSNAICTVNEINTPAAACSLEARIDALSRRLDEVLXADRYS
FT                 YADGNTHRSSRSRQRHPSSQPWGQRTSSAMRSRTPSRAPRRWICWFHYRHG
FT                 NKAEKCEKEHSNDTNTKCIFFDEHLPVYSRKK"
FT   CDS           1128..4427
FT                 /product="Gypsy-34_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VYFFRRASTGLLPKKVVRFSLHSHTHLGRDTLINPAE
FT                 TVSTSYNASSPQQRNSDSLPLQASTTLNTTSTSIKLNPGKAEVIERIYVND
FT                 SRTNNRFLIDTGAEISVIPPSNKDRMNPMPARKLFAANGSSIGTYGTKNLT
FT                 LDIGLNQSFTWPFTIADVDSHIIGADFLKHFDLLVDIKRNKLIKNKTHITN
FT                 TLPAQVFACSSNDSFSHLLNEYKDITILDNTRKAVNTNVTHQIITTGPPVF
FT                 CRPRRLDPERLREAKAEFDFLIKNGICKPSKSCWASPLHLVKKPDGKWRPC
FT                 GDYRSLNAITVPDRYPVPHIQDFSNILYNRKIFSCIDLQRAYHQIPVAPED
FT                 IPKTAISTPFGLFEFNFMTFGLRNAGQTLQRHLHSILGDLDFVFPYVDDLC
FT                 VASENEEQHHQHLRILFERLRQNGLTINPTKSQIAQTKVEFLGHLVTADGI
FT                 KPKPSKVQAIFDFPKPTIARQMKRFLGTINFYRRFIPHAAERQQILHGMMN
FT                 GNIKNDSTILTWDENSTQAFEQCKHDLANAALLAHPSPNAKLALDVDASSH
FT                 AIGAALNQLSDKGIEPLAFFSKKLSPALKKASTYDRELYAIYESIKHFKDL
FT                 LEAREFIVYTDHKPLTTAFDQKLERANPTQQRRLLFISEYTTDIRHVAGKH
FT                 NLVADMLSRIDSINTLIDYNQLADAQQTDSELQHFLNNPPKTSSLILKSLA
FT                 IPNSTKSIFCDISTQYIRPFVSKAHRKLIISKLHSLSHPGIRGTTHLVSQR
FT                 FVWPSVRKECKAFVETCIECQKNKIIRHNKTPTAAIATPNARFTHVHIDLI
FT                 GPLPPSEGNAYCLTMIDKFTRWPEVIPIPNITAETVARSFITGWISRYGVP
FT                 SKITTDLGRQFESEMFRSLSATLGIDHLRTTPYHPQSNGQIERMHRQLKTA
FT                 ILCHKNARWTEALPIVLLGMRSTIKEDIGATSAELIYGTTLRLPGEFFDEP
FT                 SNSPNITPDYIANLKNIMSSLKPSPTSNHNTKEKVYVQKQLKSCSHVFVRI
FT                 DAVKPALTPPYDGPFKILKRNKKSFVLDIRGRKSEISIDRLKAAFMMNDES
FT                 PIQSTTPVDEENNLLAKTTDPLATRTAVHQTRYGRKIYLPDKF"
XX
SQ   Sequence 4446 BP; 1400 A; 1170 C; 835 G; 1028 T; 13 other;
     actggtgacc ccgaacgcga aaaccgaaaa agttwagctt cgatcgcaaa aattacaacc        60
     gtgtaattta tcgccgckag tgttcgaccg cgtactctac ttccgcgaag tgccatcgat       120
     tttatacgga tcgaaaatat tccgcgcgtc gcgttaacaa gttmagtgtt tcgctataka       180
     akaatcgcga gtgtaaggac aatgactgac cccgcaccag caccggtgat ggttgcscca       240
     gcgatggcag cccakcattc gcctgcacmg ctacagccag cgcctattak ccggcagccg       300
     aaactagaag aggcagagat cgcgagctma tacgccgaaa tacgctttcc cgaattcgac       360
     tccgaagatg tggaaacatg gttcgtttgc ttagaagcgg cattttacgt taacaacgtt       420
     gcttccgata agcacaagtt taacgcagtg atcgttgcac tcggtacccg tgcaaagttc       480
     cttcacgccg ccwttgcaaa atgcaacaag tcgaccttgg ctgatagata ctctaccata       540
     aaaaaatcgg tcatcgattt ttttctgccg tcggaaaacc aacgccttac aagcttactc       600
     tcgggcgttt cgctaggcga ccggaaaccg agtatgctgc tttccgagat gcgcagaatg       660
     ggaggagaag gatgttccga tagcatccta tctaatattt ggttacgcgc cttgccaacc       720
     accgttcgtt ccatcatcgc tgcaatgcca tccgcatcgc ttgatgatca agccagcgta       780
     gcggataaaa tcctcgaagc gcctagcaat gccatttgca ccgttaatga gatcaacact       840
     cctgccgcag cctgcagttt agaagcccgc atcgatgcac tctctcgccg mctggatgaa       900
     gtcctamcag ctgatcgata ttcgtatgca gatggcaaca cacatagaag ttctcgatcc       960
     agacagcgtc atccgtctag ccaaccatgg gggcaacgaa cttctagcgc catgcgatca      1020
     cgcacaccat cacgcgcacc gcgccgctgg atctgttggt tccactatcg ccatggaaac      1080
     aaggcagaga agtgtgagaa agagcactct aatgacacaa acactaagtg tatttttttc      1140
     gacgagcatc taccggttta ctcccgaaaa aagtagtgcg tttctctcta cactctcaca      1200
     ctcatcttgg ccgagacact ctcatcaacc cagccgagac cgtgagcacc agctataacg      1260
     catcctcacc gcagcagcgc aacagcgaca gcttaccact acaagcaagc accacgctaa      1320
     acaccaccag caccagcatc aagctgaacc ccggtaaggc cgaagtaatc gagcgcatct      1380
     atgtgaacga cagcagaacc aacaacagat tcctgatcga caccggcgcc gagatttccg      1440
     tcataccacc atccaacaag gacagaatga acccgatgcc agccagaaaa ctcttcgctg      1500
     caaacggcag ctcaatcggt acgtacggca caaaaaactt aaccctagac atcggtctta      1560
     accaatcatt cacatggcca tttacaatag cagatgtaga ttcgcatatt atcggagctg      1620
     attttttaaa acacttcgat ctactcgtag atatcaaacg caacaagcta attaaaaaca      1680
     aaacacacat aactaataca ctaccagcac aagtattcgc atgtagttca aacgatagct      1740
     tctcacatct cttaaacgaa tacaaagata tcacgatact cgataacaca cgcaaagcag      1800
     tcaatacaaa cgtaacacat caaatcatta ccaccggtcc acccgtcttt tgccgtccac      1860
     gccgtttgga cccagaaagg ttacgtgaag caaaagctga atttgacttt ctcataaaaa      1920
     acggcatttg taaaccatcg aaaagctgtt gggcaagccc tttacacctc gtaaagaaac      1980
     cagatggaaa atggcgaccc tgtggggatt ataggagctt gaatgctatt accgttcctg      2040
     accggtatcc cgtcccccac attcaagatt tttcaaatat tttgtataac agaaaaatat      2100
     tttcttgcat cgacttgcaa cgtgcatatc atcaaatacc tgtggctcct gaagacatac      2160
     ccaaaacagc catttcaaca ccattcgggt tatttgaatt taattttatg acatttggcc      2220
     ttcgaaacgc aggacaaacg ttacaacggc acttgcattc catccttggc gatttagatt      2280
     ttgtttttcc gtatgttgac gatttatgcg tcgcctccga gaacgaagaa cagcaccacc      2340
     aacatttgcg catactgttc gaacgtttga ggcagaacgg actaacaatt aatccaacaa      2400
     aaagtcaaat cgcgcaaaca aaagtagaat ttcttggtca tcttgtaacc gcagatggta      2460
     ttaaaccaaa acccagcaag gttcaagcta tttttgactt tccaaaacca accatagcca      2520
     gacaaatgaa acgcttcctt ggcacgatta atttttaccg gcgttttata ccgcatgcag      2580
     cagagcgcca acaaattttg cacggtatga tgaatggcaa cataaaaaat gactccacta      2640
     tacttacctg ggatgaaaac agcacgcaag catttgaaca atgcaaacac gatctggcaa      2700
     acgcagcttt attagctcac ccttcaccaa atgcaaagct cgccttagat gttgacgctt      2760
     caagtcatgc tataggagct gcactaaatc agttatctga caagggtatc gaacctctcg      2820
     ctttcttttc taaaaaattg tcacctgcac ttaaaaaagc cagcacttat gatcgcgaac      2880
     tttatgctat atacgaatcg ataaagcatt ttaaagacct tttggaagca cgtgaattta      2940
     tcgtatacac ggatcacaaa ccgttaacca ctgcatttga tcaaaaactc gaaagagcca      3000
     atcccacgca acaaagaaga ctgcttttca tcagcgagta caccaccgat atacgacacg      3060
     tggccggcaa acacaaccta gtagcagata tgttaagtcg tatagatagc ataaacacgc      3120
     tcatcgatta taaccaatta gcagatgcac aacaaaccga tagcgaacta cagcattttt      3180
     taaacaaccc accgaaaaca tcatcactga tattaaaatc actggctata ccgaactcta      3240
     ccaaatctat tttctgcgat atttccactc aatacatccg acctttcgtt tccaaagcgc      3300
     acagaaaact gatcatctcc aaactgcaca gcttatcgca tcctggtatt agaggaacaa      3360
     cacacctagt atcgcaacgc tttgtatggc catcagttag aaaggaatgc aaagcgttcg      3420
     tagagacgtg tatcgagtgc caaaaaaaca aaataatacg gcataacaag acacctacag      3480
     ccgctatagc cacaccgaac gcacgcttca cacacgtaca catagattta atcggaccac      3540
     taccaccatc agaaggaaac gcgtactgct tgacgatgat cgacaaattt acgcgatggc      3600
     ctgaagtaat accgatcccc aacatcaccg ccgaaactgt tgcacgttcc tttattacag      3660
     gatggatttc gagatatggt gttccctcta aaataaccac cgatctcgga aggcagtttg      3720
     aatcggaaat gtttcgttca ttgtccgcaa cgctcggaat cgaccacctt cgaacaacac      3780
     cttaccaccc ccaatcaaac ggccagatcg aaaggatgca tcgacagcta aaaaccgcta      3840
     tcctttgcca caaaaacgct cgttggacgg aagcactccc aatagtgttg cttggtatgc      3900
     gctccaccat aaaagaagac atcggtgcaa caagtgcaga actcatctat ggtacaacac      3960
     ttcgattacc tggtgaattt tttgacgaac catcgaattc acctaacatc acgcctgact      4020
     acatagcaaa tctaaaaaat ataatgtcat cgttgaagcc gtcccccaca tcgaaccaca      4080
     acacgaaaga aaaagtatat gtacaaaaac aactaaagtc ctgttcccat gtttttgtcc      4140
     gcatcgacgc cgtgaaaccc gctttaaccc ctccttatga cggtccattt aaaatattaa      4200
     aacgtaacaa gaaatctttc gttttagata tcagaggcag gaaaagtgaa atttccatcg      4260
     atcgtttgaa ggccgcattc atgatgaatg atgagtctcc gatccaaagc accacccccg      4320
     ttgatgagga aaacaatctg ctcgccaaaa cgaccgaccc acttgcgact cgaactgccg      4380
     tccatcagac gagatatggt aggaaaattt atcttccaga taaattttaa ataaaggggg      4440
     aagtga                                                                 4446
//
ID   Gypsy-34_AnMe-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-270
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6871-6871 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 270 BP; 78 A; 78 C; 50 G; 61 T; 3 other;
     tgtggcgtac ctcgcacgca agctgcacca cactatagtt gcgctaatac accacacctg        60
     cgttacacca cacttgcgtt acaccgcatg caagcaatcg gcttaattcg gtaatcgtac       120
     cgaaccgsat aactgcacta ccgtgcatcg gaaatagaat awaaacgctc tctttccatt       180
     ttgaccgcta agcgaaccag acgtgagtag aagtcattcc gcacatccgt acatcctaag       240
     tagmtagtag ttgacacgca taaccctata                                        270
//
ID   Gypsy-34_CQ-I repbase;    DNA;    INV; 4077 BP.
XX
AC   AAWU01012010;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_CQ_;
KW   Gypsy-34_CQ-LTR; Gypsy-34_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4077
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 447-447 (2011).
XX
DR   GenBank; AAWU01012010; Positions   12702    8626.
XX
CC   Positions [3121-3636] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(73..930,934..4044)
FT                 /product="Gypsy-34_CQ-I_1p"
FT                 /translation="MSDDEKKKTSAVTDAAQVETVTAPRLNPPSMTDSNIE
FT                 SYFMSLEFWFAASGIATQHDGRRYNIVMAQVPVSKLTELKAIIDAVPEVGK
FT                 YTYIKKALIDYFADSQQRRLQRVLSDMPLGDMKPSRLFNEMKRVAGTSLGD
FT                 GVLLDLWSTRLPPHAQAAVIASKGDAADKTAIADAIVDSMALRNINAIAFE
FT                 APRVPSDTTTTLPSSVDGMAAMQREIAELSRKLDQVWNFRDSRSGSRARSR
FT                 TRQTYRSRDREPSNGPCWYHRVYGNDARRCRQPCNFDRPSTTSRPLDLVEP
FT                 VAEIGELSDTATIFRLKISDTSTNMQFLIDTGADVSVIPRGVRSAEVKPSS
FT                 MQLFAANGTPIKVYGEVLLKVNLGLRREFSWTFLIAEVTSGIIGADFICHH
FT                 DLLIDLKRKRLIDNTTRLEAAGILARSSEYSIKTFSTDSPYAELLAKFPLI
FT                 TRLAPPGTVTQSTVYHRIETTGQPTFARPRRLPPDKLQAARAEFEHLMQLG
FT                 ICRPSSSNWASPLHMVKKADGTWRPCGDYRALNAITVPDRYPLPYLQDFTC
FT                 NLHGKTIFSKVDLQKAFHQVPIHPEDIPKMAITTPFGLFEFAFMTFGLRNA
FT                 AQTFQRIIHQVVRGLDFVFPYIDDIFIASTSPEEHLDHLRTLFERLQQHHL
FT                 AVNAAKCEFGRSQITFLGHLVTAQGISPLPERVEAISSFPKPTSVKDLKSF
FT                 LAMINFYRRFIPNAIVDQVPLLTLTPGNKRNDRTVLVWTDETTAAFERCKQ
FT                 QLAQAALLAHPAKSAELSLWVDASNIAAGAVLHQLVAGKAQPLGFFSKKFD
FT                 KAQLRYSTYDRELTAIFLAVRHFKYMLQGRKFHIYTDHKPITFAFRQNLDK
FT                 ASDRQARQLDYIGQMTTDIRHVVGQENVTADLLSRIEAVQAGQPIDFAALA
FT                 DAQKTDSEILDILRGNSSSSLQLKPFTIPGSSKQLYCDCSQNQLRPFVTRG
FT                 FRDQILAATHNLAHPGTRATARLMAERFVWPNIRKDSIAYAKSCLQCQRSK
FT                 VTRHTQSPTVRFAPPDSRFAHINIDIVGPFPPSNGQRYCLTIIDRFSRWPE
FT                 AIPIPDMTATTIAQALVDGWIASFGVPAIITTDQGRQFESTLFAELVRILG
FT                 ITHLRTTPYHPQSNGMIERWHRTLKAAILCHNTERWTEHLPLILLGLRTTY
FT                 KEDIRASPAEMVFGTTLKIPSEFFAANNNIHTDSEFATNLREAMRCLRPTE
FT                 TAWHGQRGVFVHPDLRSCQQVFVRNDSIRPSLSAPYAGPYEDVSRNDNHFK
FT                 VSVNGRMVNISIDRLKPAYTAEDQQQQHQPELGAGPASTESSPLSTRTTRS
FT                 GRRVTIPLRYR"
XX
SQ   Sequence 4077 BP; 989 A; 1176 C; 1047 G; 865 T; 0 other;
     tattggtgac cccgacgtga tctagttcaa agtttccttc acgtatttcg cgtaattcga        60
     acgtttcgcg agatgtcgga cgacgaaaaa aagaaaacct cggccgtcac ggacgccgcg       120
     caggtggaaa cggttaccgc gccgcgactg aatccgccga gtatgaccga ttcgaacatc       180
     gagtcatatt ttatgtcgct cgagttctgg tttgcggctt ctgggatagc cacccaacac       240
     gacggccgtc gttataacat cgtgatggcg caggttcccg tgagcaaact aacggaattg       300
     aaggccatca tcgacgcggt tccagaagtc gggaagtaca cgtacataaa aaaggcgctg       360
     attgattact ttgctgacag ccagcagcgg cgtctgcaac gtgtcctttc cgacatgccg       420
     ttgggggaca tgaaaccgag ccggctgttc aacgagatga aaagggtggc cggaacatct       480
     ttgggcgatg gtgtgctgct cgatctgtgg tcgacaaggc ttcctccaca cgcacaggcc       540
     gcagtgatcg cttcgaaagg agacgcggca gacaagactg cgatcgcgga cgccattgtt       600
     gattcgatgg ctttgcggaa cataaacgcc atcgcgttcg aagcaccacg tgttccctcg       660
     gatacaacaa ccactctccc gtcgagcgtc gacggcatgg ccgccatgca acgcgagata       720
     gcggagcttt ctcgaaaact tgaccaggtt tggaacttcc gcgactctcg gagtggttct       780
     cgtgcccgca gtcgcacccg gcagacctac cgtagtcgtg atcgggagcc gtcgaacgga       840
     ccatgctggt atcaccgcgt ttacggcaac gacgcccgta ggtgccgaca accatgcaat       900
     ttcgaccgcc cgtcgacaac aagccgccca tgactagacc tcgttgaacc tgtggcagag       960
     atcggcgaac tctctgacac agcaaccatc tttcgcctca agatctcgga cacgtcaaca      1020
     aacatgcaat ttttaatcga tacgggagcc gacgtgtccg taataccaag aggtgttcgt      1080
     tcagccgagg tcaaaccatc atccatgcaa ctgttcgccg ccaacggaac gccgatcaag      1140
     gtatacggcg aggtgctgct aaaagtcaat ctcggccttc gtcgtgaatt ctcgtggacc      1200
     ttccttatcg ccgaggtgac gtcaggaatc atcggagctg attttatctg ccatcacgac      1260
     ctcctgattg acctgaaacg gaagcggctt atcgacaaca ccacgcggct ggaggcagct      1320
     gggatcttgg cacgatcaag tgagtactca atcaaaacgt ttagtaccga ctcaccgtac      1380
     gctgaactgc tcgccaaatt cccattgata acccgcttgg cacctcctgg tacagttacc      1440
     cagtctacgg tgtaccaccg catcgaaacg acgggtcagc caacgtttgc ccgtccaaga      1500
     cgtctacccc cagacaagct gcaagctgcc cgagctgaat tcgagcacct gatgcagcta      1560
     ggaatctgtc gcccttccag cagcaactgg gcgagtcctc tgcacatggt gaagaaggct      1620
     gatggaacct ggcgaccttg tggggattac cgagcattga atgctatcac ggtgccggac      1680
     cggtacccgt tgccgtatct gcaagatttc acctgcaacc tccacggaaa aacgatcttc      1740
     tcgaaggtcg atttgcagaa agcctttcat caggtcccaa ttcatcctga agacatccct      1800
     aagatggcca tcacgacgcc gtttggtctg ttcgaattcg ccttcatgac gttcgggctg      1860
     cggaacgcag cacagacctt ccaacgaatc attcaccaag tcgtccgcgg actagatttc      1920
     gtgttccctt acattgacga cattttcatc gcgtcgacgt cgcctgagga acatctcgac      1980
     caccttcgta cacttttcga gaggctgcag cagcatcacc tggcggtcaa cgcagcaaag      2040
     tgcgagtttg gtcgttcgca gattacgttt cttggtcatc tggtcacagc gcaggggata      2100
     agtccattac cggagcgagt cgaagcaatc agcagctttc ctaaaccgac gtcggtgaag      2160
     gacctcaaaa gttttctcgc aatgatcaat ttctaccggc gatttatacc gaacgctatc      2220
     gtggaccagg tgccgctgct gaccttaaca cccgggaaca agcggaacga tcgtacggtg      2280
     ctggtgtgga cggatgaaac aacagctgcg ttcgaacggt gtaagcaaca actcgcgcag      2340
     gccgcactgc tcgcccatcc ggccaaaagt gcggaactgt cactctgggt ggacgcgtct      2400
     aacatcgccg caggagctgt tctccaccaa ctcgtcgcag ggaaagcaca gcctttgggg      2460
     tttttctcca aaaagttcga caaggctcag ctgcggtaca gtacctacga cagagaactg      2520
     acagcaatct ttttggcagt ccgccatttc aagtacatgc tgcaaggtcg gaaattccac      2580
     atctacactg accacaagcc gattacgttt gcctttcgtc aaaatcttga caaagccagt      2640
     gatcgtcaag cccgtcaact agactacatc gggcaaatga cgaccgacat ccggcacgtg      2700
     gtgggccagg agaacgtgac agctgacctg ctttcgcgca ttgaggcagt gcaagctggg      2760
     caaccgatcg acttcgcagc gcttgccgat gctcaaaaaa ccgacagcga aatcctggac      2820
     attttgcgag gtaattcgag ttcaagtttg cagcttaaac catttacgat tccaggcagc      2880
     tcgaaacaac tttactgtga ctgctcgcaa aaccaactgc ggccatttgt cacacgtgga      2940
     ttccgggacc aaatcttggc cgcaactcac aaccttgcac atcctgggac tagggcgacg      3000
     gcgaggctga tggcggagcg gtttgtgtgg ccgaacattc gaaaggacag catcgcctac      3060
     gcgaagagct gtttgcagtg ccagcgatca aaggtgactc ggcacacgca atcgccaacg      3120
     gtccgatttg cacctcccga cagtcggttt gcgcacatca acattgacat tgtgggcccc      3180
     tttccgccaa gcaacgggca gcgatattgc ctcaccatta tcgatcgttt ctctcgatgg      3240
     cctgaagcga tcccgatccc cgatatgacg gcaactacaa tcgctcaagc acttgtcgat      3300
     ggttggatcg catcgtttgg cgtgccagcg attatcacca ccgaccaagg acggcagttt      3360
     gagtcaacgc tatttgccga gcttgttcgc atccttggga tcacacacct gcgaacaaca      3420
     ccgtaccacc cacaatccaa cgggatgatc gagcggtggc acaggacact gaaagcggca      3480
     atcctctgcc acaacactga acgctggact gaacatctgc cgctgatcct gcttggccta      3540
     cgcacaacct acaaggagga catcagggct tccccggcag aaatggtgtt tggcacgacg      3600
     ctgaaaatcc cgtccgagtt ttttgctgca aataacaaca tacacactga ctcggaattc      3660
     gccaccaacc tgcgagaggc aatgcgatgt ctccgtccaa cggaaactgc gtggcatgga      3720
     caacgtggtg tattcgtcca tccggacctc agaagctgcc agcaggtgtt cgtccgcaac      3780
     gactctattc gaccatccct ttcggcgcct tatgctggtc cgtacgaaga tgtcagcagg      3840
     aacgataacc acttcaaagt gtcggtaaac gggagaatgg tcaacatttc aattgaccga      3900
     ctgaaacctg cctacactgc cgaggatcag caacagcagc accaaccaga gctcggcgcc      3960
     ggcccggcct cgacggagtc ttcgccgtta tcgactagga cgacgcgttc tggacgacga      4020
     gtgacaatcc ctcttcgtta tcgatgagat cgtcgcctag tctgcggggg agtactg         4077
//
ID   Gypsy-34_CQ-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   AAWU01012010;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_CQ_;
KW   Gypsy-34_CQ-I; Gypsy-34_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 448-448 (2011).
XX
DR   GenBank; AAWU01012010; Positions    8625    8381.
XX
SQ   Sequence 245 BP; 61 A; 61 C; 47 G; 76 T; 0 other;
     tggcggagac gatcgtcatc gtaaaccctg ctggcccagt caacgatgat cgacccgtgt        60
     gccgcgatca acaaaagatc ggcacaacaa ttgtttcgat ttacccacat ctcgtattca       120
     cacatacgaa cgatttcttt tggatttgtg ctttgcaccc tttgtaatta gaattagttt       180
     ttaatacatt tttggactac tatcagatca cacgtctttt tgttctgcgg atggccaact       240
     cgcca                                                                   245
//
ID   Gypsy-34_DAn-I repbase;    DNA;    INV; 4532 BP.
XX
AC   AAPP01015671;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DAn_;
KW   Gypsy-34_DAn-LTR; Gypsy-34_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4532
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015671; Positions  263706  268237.
XX
CC   'TATAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           578..4531
FT                 /product="Gypsy-34_DAn-I_1p"
FT                 /translation="MAENCLKPFLCDSIEKSVLRNEWERWFRAFTISLEAE
FT                 QIEAPKMKRTKLLHMGGVQLQTVAFSIPGALVDYDEAQGNDVFEILVEKLN
FT                 AYFSPKQNSTFERHLFRKLAPLENENFAKFILRLRQQICKCSFGQSKVETE
FT                 EICLKDKIIDSWAPVDLKKKLLEREYSLDEVIEACQVEEQINKQSEAMLIK
FT                 PNNTSIDSINKVTAGKAKADVECSRCGRMGHASNDFSCPARVAKCNKCSKI
FT                 GHFARKCRTKLYSQSRNGNLKRRQNNVRCVEDEHAGCKRKKTCENCFKICS
FT                 DGEEGLINCLIGGYEIPLIIDSGSKFNLISHIDWMKLNHGNTTLFNVRSHS
FT                 QKQFRGYASEQLLEVICVFDAPISAVPKAEVIATFFVIKNGRQSLLGRETA
FT                 IKLNVLRLGLDINQVETTTPFAKWKGIKVKLWVDPQVIPIQQPVRRIPVAL
FT                 EEKVAAKLEEGLSRDIIEAVTGPSAWISPIVLAFKENGDVRLCVDMRRANK
FT                 AIRRENYPMPTFESFMTKLKDAKFFSRLDLKDAYHQLELDEASREITTFIT
FT                 PKGLFRYKRLMFGINSAPEIFQRHLEQLLAPFTNVMNYIDDVIIFGASEEE
FT                 HDKTVRDVCKVFDGNGVLLNDQKCTWKTNRLKFLGHIISDKGIEVDPEKVN
FT                 LIRGFREPINKEETRSFLGLVTYVGKFIPDLTHYTEPLRQLLKKDSKFSWG
FT                 KVERDAFRNLKDRLAKVPNLAYFNTRNRTRLIADASPIALGAVLLQFSGNG
FT                 DPLIISFASRALSDIEKRYSQTEKESLALVWSVERFYYYLTGLHFELVTDH
FT                 KPLEAIFKPTSRPPARIERWLLRLQSYQFKVIYKAGKENISDSLSRLCQTS
FT                 PSDSCVGDKDYSILRVVENSIPQSMTISEIANHSTKDEEIIDAMSCLECDS
FT                 WKPGSLKQLYPFRYELSAIGALLLRGNRIVIPTSLRNRVLELAHEGHPGES
FT                 AMKRRLRSKVWWPLIDRDAEKYVKHCRDCLLVSQNPKPAPMERNPFPTGPW
FT                 IWVASDILGPLPNNEFVVVFIDYYSRYMEFKFLRSITSASLIEVMREIFCR
FT                 LGYPKHLRTDNGRQYISQEFEEYCKTCGIEQVKSPPYWPQANGEVENMNRS
FT                 LVKRLKIAHSNSKNYREEIQKFILMHNVTPHSITGVAPTQLMFNRVIRDKV
FT                 PCIDDIQEKGIDSAERDRDCILKQKGKEEADKKRGAKDNVINVGDKVLLKN
FT                 VVFPHKLTPSFQETEYVVVEKNNNIVKLMSGDRTLTRNVSHVKKIPIYAND
FT                 LEAPLHSSIGNTQPRITSTQEDHGDDERKGQQRRQSTDKLDPLPTKSLKLK
FT                 LVNKGG"
XX
SQ   Sequence 4532 BP; 1485 A; 898 C; 1047 G; 1102 T; 0 other;
     ttggcgacga ggtaaattct attttggaag ttttttttta taaaataatt ggcattaagc        60
     cgaatatcac gcgtataaaa aaaattttcc ttgtcacacg gcattgccag cccaataaat       120
     tgggaaacga agcaggaggt gagacataaa ggcgaaagat gtgccggcgt gagaggtttt       180
     gtgttctctt tcaaagggaa aaattgcatc acgaagagag gctgcgttag aaaacaagcc       240
     aaagttgatt tggaaagatt tataaatgca atagaggctg cgttcaaaca agcctaaata       300
     gtattgagtt aaatgcattc aattgtaaat caaaagaggc tgcgcggaag agttaaaatc       360
     tgacaagcca aaaaggaaaa taatgaatta agaggaggcc gtgcgtaaga gtttcgacct       420
     acgtaagcca aatgaatgtg tagactatac acagtagaga tacaagtaaa aaaaaaaaag       480
     gaaaggaaat aaagtatata actcgaggct gcgttcaaac aagccaatat tagaataaaa       540
     acaaacattt tttttttgtt ttctgtttgg tttcaggatg gctgaaaatt gtttgaaacc       600
     gttcctatgc gactctattg agaagtctgt gcttcgaaat gaatgggaga ggtggtttag       660
     agcattcacc atatcattgg aggccgaaca gatcgaggca cccaagatga agagaactaa       720
     actccttcac atggggggcg tgcaactgca gactgtcgcg ttctcgatac caggtgcact       780
     ggtggattat gatgaagccc aggggaatga tgtcttcgag attttggtgg agaagctaaa       840
     tgcttacttt tcgcctaaac aaaactccac ttttgaaagg catttgtttc gaaagttagc       900
     accgcttgag aatgagaatt ttgcgaagtt tattttacgg ttgcggcagc aaatctgcaa       960
     atgttcgttt ggccaatcta aggtggaaac cgaggagatt tgtctaaaag acaagataat      1020
     agattcgtgg gcgccggtag atttgaagaa gaaactatta gagagggagt attccttgga      1080
     cgaggtcata gaagcttgcc aggttgagga acaaataaat aaacaatccg aagccatgct      1140
     gataaaacct aataacacca gcattgactc catcaacaaa gttacggctg ggaaagcaaa      1200
     ggcggatgtt gagtgttcca gatgtggtcg aatgggtcac gcgagtaacg atttctcctg      1260
     cccggcgcga gttgcaaaat gtaacaaatg ctccaaaatc ggtcatttcg cacggaaatg      1320
     cagaacgaaa ctgtattctc aatcaagaaa cgggaatctt aaaaggcggc agaataatgt      1380
     tcgatgcgtg gaagatgagc acgctgggtg caaacggaag aaaacatgtg agaattgttt      1440
     taagatatgc agcgacggag aagaaggact tataaattgc ctaataggag gttatgagat      1500
     acccctaatt attgattcgg gatcgaaatt taacctgatt agccacatag actggatgaa      1560
     gcttaaccac ggcaatacga ccctttttaa cgttagatcg cattcacaga aacaatttcg      1620
     tggatacgca tctgaacaat tactggaagt aatttgcgtt tttgatgcac cgatatcagc      1680
     tgtgccaaaa gcggaggtga ttgctacatt ttttgtcatt aaaaatggac gtcagtcatt      1740
     attgggccga gaaaccgcca ttaaactcaa cgttcttcgt ctgggcctag atatcaatca      1800
     agtggaaaca accacaccgt ttgctaagtg gaaagggatt aaagttaaac tatgggttga      1860
     cccccaagtt atccctattc aacagccagt tcgaaggatt ccggtagcac tcgaagagaa      1920
     agtagctgcc aagctggaag aaggtttaag tcgagacatt atcgaagcgg ttactggtcc      1980
     cagcgcgtgg atctctccca ttgtgctggc gttcaaggaa aacggtgatg ttaggttgtg      2040
     tgttgatatg cggagagcaa ataaggccat tcgtcgggaa aattacccga tgccgacatt      2100
     tgagtctttt atgaccaaat taaaagacgc aaaattcttt tcgcgtctcg acctcaaaga      2160
     cgcctatcat caactagaac tcgacgaagc cagcagggaa attacgacgt tcataacccc      2220
     taaaggactc tttaggtaca aacggctaat gttcggaatc aactcggctc cggaaatatt      2280
     tcaacgtcac ctcgaacagc ttctggcacc ctttaccaac gtcatgaatt acattgacga      2340
     tgtcattata tttggagcta gcgaggaaga acatgacaag acagtaagag atgtctgcaa      2400
     agtattcgat ggaaacggtg tcttactgaa cgatcaaaaa tgcacctgga aaacaaacag      2460
     actcaagttt ctgggtcaca tcatctcaga taaaggtatc gaagtggacc cggaaaaagt      2520
     caatttaatc cgagggtttc gggaaccaat taacaaggaa gaaactcgca gttttctagg      2580
     gttggtgaca tacgttggaa aattcattcc agacctgact cattacacgg aaccgctaag      2640
     acaattgcta aagaaggact cgaaatttag ctggggaaag gtggaaagag atgcctttcg      2700
     gaatctaaaa gatcgattgg cgaaagtacc aaacctcgca tatttcaaca cgcgaaatcg      2760
     aactcggcta atagccgatg ccagtccaat agcgcttgga gcggtattac tgcagttctc      2820
     aggtaatggc gatcccctaa ttatttcatt cgctagcaga gctttgtcag acattgagaa      2880
     acgttattcc caaacagaaa aagaaagtct ggctctagtt tggtcggttg aaagatttta      2940
     ctattacctg acaggacttc acttcgaact tgtaaccgac cacaaaccgt tggaggccat      3000
     tttcaaaccg acatccagac cgccagcccg catagagaga tggctactac ggctccaatc      3060
     ctaccaattc aaagtcatct ataaggcggg aaaagagaac atatcggact cattatcccg      3120
     actctgccag acatctccat ccgattcttg tgtcggagac aaggattaca gcatactacg      3180
     ggtggtcgaa aacagtattc cccaatcgat gaccatttcg gaaattgcta accattcaac      3240
     aaaagatgag gagataatcg atgcaatgtc ctgtttggag tgcgactcat ggaaacctgg      3300
     atccttaaaa caactttacc catttcgtta tgagctctca gctataggag cccttctgtt      3360
     gcgtggtaac cgcatcgtga tcccgacatc gcttcgaaac cgagtgcttg agctggctca      3420
     cgaaggacat ccgggagagt ctgctatgaa aagacgtctg cgatcgaaag tatggtggcc      3480
     actgattgac cgtgacgcag aaaaatacgt aaaacattgc agagactgtc ttctagtgtc      3540
     gcaaaaccca aagccagcac cgatggaacg gaatccattc ccaaccggtc cgtggatttg      3600
     ggtagcttca gacatattgg ggcccttacc aaataatgag ttcgtagtag tatttattga      3660
     ctattactct cgctatatgg agttcaaatt cttacgctct attacgtcag ccagcctgat      3720
     tgaagtgatg agggagattt tctgtaggct ggggtacccg aaacatttaa gaactgacaa      3780
     tggacgacag tacataagtc aagaattcga ggagtactgc aaaacttgcg gtatagaaca      3840
     agtcaaatct ccaccctatt ggcctcaagc taatggagaa gtggaaaaca tgaatagatc      3900
     tctggttaaa cgcttaaaga tagctcattc taattcaaaa aactacaggg aagaaatcca      3960
     gaaatttata ctcatgcaca acgtcactcc acatagcata actggggtag caccgactca      4020
     actcatgttt aatagggtta tccgcgacaa agttccatgc atagatgaca tccaagagaa      4080
     gggtatagac tctgctgaaa gggacaggga ttgtatattg aaacaaaaag ggaaagaaga      4140
     agcagataaa aagaggggag caaaggataa cgtaattaat gtaggggata aggtgctttt      4200
     gaaaaatgta gtttttcctc ataagttaac cccaagcttc caggaaaccg aatatgtggt      4260
     tgtcgagaaa aataacaaca tagtcaaact tatgtcagga gacagaactc tgacaagaaa      4320
     tgtatctcac gtcaaaaaga taccaatata tgcaaacgat ttggaggctc ctttacactc      4380
     ttctataggc aacactcaac ccaggataac atcaacccag gaggaccatg gagacgatga      4440
     acggaaaggc cagcagcgta gacagtccac ggataaactg gaccctttgc ccaccaagtc      4500
     cttgaagcta aaactcgtta acaaaggagg ga                                    4532
//
ID   Gypsy-34_DAn-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   AAPP01015671;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DAn_;
KW   Gypsy-34_DAn-LTR; Gypsy-34_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-204
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015671; Positions  263502  263705.
XX
SQ   Sequence 204 BP; 66 A; 37 C; 63 G; 38 T; 0 other;
     tgtgggagcc ggcaacgggc ggtgacgtca caaacgagag cggagatgct gccagagaga        60
     gagtgaaggg atcgacggac aagagcgact tgtcagtcga ggaatagaaa gcacacagag       120
     cggctgtatt acaagaccaa taaatagtgt taaacttaat taccaagagt tcatcattct       180
     tgggggaact tgcgggttaa taca                                              204
//
ID   Gypsy-34_DEl-I repbase;    DNA;    INV; 4546 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DEl-I.
XX
NM   Gypsy-34_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4546
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 475-475 (2012).
XX
RN   [2]
RP   1-4546
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon, and can include LTR.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..4029
FT                 /product="Gypsy-34_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MILCEHPQEGASLVMTLSKSLLGSASQWLSQICFAGM
FT                 SWAEFKELFMERYEGNETPAALLLNMLKGRPSPNECLSVYSSRMVTSLLTK
FT                 WKAMTHEEIAISLVLAHSSQIDSRLQRLVFTTNIKTRAELQQQLKAHSFAR
FT                 NSEFSGMDMGPEKKRFKMQTPIRCHSCGKLGHKAIECRRRKAEERNETRAG
FT                 HGNGRSTMMRERSTVTCFKCGNVGHIASVCTKGPAAASKSSERRVDMCAIL
FT                 QPNGTAIQFGERFPFFFDSGSECSLVKETTGEKLGGKRCHNLVVLRGIGDN
FT                 IVKSTMQILSTVQISEFNFELLFHVVDNKCLKYDMIIGQDIFQLGFGVMLE
FT                 SNKFDIYRTQTVLSVIDDNTLNKIDYKNNVNIDLIDSDKSKLNDILTKYSM
FT                 FFIDGIPSRRVTTGSLEIRLLDRNKTVQRRPYRLSENEKQIVRDKIQQMLE
FT                 ANVIRPSSSPFASPMLLVKKKDGSDRLCIDYRELNANTVSDRYPLPLIADQ
FT                 IDRLRGGKYFSSLDMASGFYQVPIHPDSVERTAFVTPEGQYEFLAMPFGLK
FT                 NASSVFQRAIVRALGDLVNTYAVVYIDDVLIVSNSTDEAFERLEAVLSVLS
FT                 KSGFSFNVKKCQFLHTEIEYLGFLIRDGELKPNPRKIQALTQLPKPASVTQ
FT                 IRQFIGLSSYFRQFVPRFSEVMKPLYQLTSKSNAFEWKEQHEEIRQKIIKV
FT                 LTSDPVLIIFDPKFPVELHTDASANGYGAMLIHKVDGKRRVVEYYSKCTTL
FT                 AESKYHSYELETLAVYNAIKHFRHYLSGRKFTVYTDCNSIRASREKAALTP
FT                 RVHRWWSFMQPFEFQVEYRKGSQMAHVDCLSRNPVEVVAQANASKVVEVRV
FT                 DLATITHNWLVSEQQRDQNISRIMTELNSDEMQKELANTYEIRKSLLHRNI
FT                 QRNGKTRCLPVVPRAFRWSVINYIHEAIMHLGWQKTLDKVYEQYWFENMSK
FT                 YVRKFVENCVTCKLSKSASGKTQLELHPIPKVEIPWHTLHIDISGKLSGKK
FT                 DEKEYIIVQIDAFTKFVYLYHTWNLDTASCIQSVKSAISIFGVPSRIIADQ
FT                 GRCFTSSEFRKFCSTNKIDLHVIATGASRANGQVERVMSVLKGMLTAVETS
FT                 ERSWQEALGEIQLAINCTTNRVTKHSALELLIGKEARPMGMLTINEDMRID
FT                 LEKARENAKNNIDKNAMYEKERVDKKHARVVKHKVGDHVLLKSEERHQTKL
FT                 DPKFKGPFVIVELLDGDRYLLKSLTTKRMYKYPHDSVRSLPDEREAIELIE
FT                 EFDDGERDKINKT"
XX
SQ   Sequence 4546 BP; 1492 A; 828 C; 1083 G; 1141 T; 2 other;
     tcagaagtgg gatcaccacc cctacaagac aattcggaga acagctggcg cacgcttctg        60
     gaatcgcaaa atagagtgat tacggaactt ttgaaagcag cacaatccac gccggcgcct       120
     agcacgcgcc ctgtctcggc agtgctacca acgttcaacc ccgaagctgc tgacgccgac       180
     gcagcagcat ggtgcaaaac ggctagcatg attctatgtg aacatccgca agaaggtgca       240
     tctttggtaa tgacgctcag caagtcgttg ctcggtagtg catcgcagtg gctatcacaa       300
     atatgcttcg ccggaatgag ctgggcggaa ttcaaggaat tgttcatgga gcgctatgaa       360
     ggcaacgaga cgccggcggc attattgcta aacatgctga agggacgccc aagccccaac       420
     gaatgcctat cagtatactc cagccgaatg gttacatctt tattaaccaa gtggaaagcg       480
     atgacacacg aagaaattgc tatatcgttg gttctggcac attcgtcgca aattgattcc       540
     agactgcagc gattagtgtt tacaacaaac ataaagacaa gagcggagct acaacaacaa       600
     ctcaaagcgc attcgttcgc cagaaattca gaattctctg gaatggacat gggccccgag       660
     aagaagaggt ttaaaatgca aacgccgatt agatgccata gctgcggaaa gctggggcac       720
     aaagcaatag agtgtcgcag gaggaaagca gaagagagga acgagacaag agcaggccat       780
     ggcaacggca gatcaacgat gatgagagag agatcaactg tgacatgttt taagtgcggc       840
     aacgttggac acatcgcatc agtgtgcacg aagggaccag cagcagcgag taaaagcagc       900
     gagagaagag tagacatgtg cgcgattctt cagcctaacg gaactgcaat acaattcggt       960
     gagcggtttc catttttctt tgattcgggt tccgaatgct cgttggtgaa agaaacaaca      1020
     ggcgagaagc taggcggcaa aagatgtcat aacttggtag ttttaagagg cattggcgac      1080
     aatattgtca agagcactat gcaaattctg tctaccgtac aaatttcaga atttaatttc      1140
     gaattgttgt tccacgtagt agataataag tgtctcaaat atgatatgat aattggacaa      1200
     gacatttttc aacttggctt tggagtaatg ttagaaagta ataaatttga tatttataga      1260
     actcaaacgg tattatcggt aattgacgat aacacattaa ataagattga ctataaaaat      1320
     aatgttaata tagatttaat tgatagtgat aagtcaaagc taaacgacat attgaccaaa      1380
     tattccatgt tcttcataga tggtatccca agtaggcgtg taactacggg ttcattggaa      1440
     atccgtttgt tggatagaaa caaaacggtw caaaggcgac cgtatcgcct tagcgaaaac      1500
     gagaagcaga tagttaggga caaaattcag caaatgttag aagcaaatgt aatacgacct      1560
     agcagttctc cgttcgctag cccaatgtta ctagtcaaaa agaaagacgg gagtgacaga      1620
     ctatgcatcg attatcgtga attaaacgcw aacactgtgt cagataggta ccccttacca      1680
     ttaatcgcag accagattga tcgcctgcga ggtggaaaat atttttctag cttagacatg      1740
     gccagtggct tttaccaggt gcctattcac cccgattccg ttgaaagaac tgcattcgtg      1800
     actccggagg gtcaatacga atttctagca atgccgtttg gactgaagaa cgcctcatcg      1860
     gtctttcagc gcgccatagt tcgagccttg ggggatttag tcaatacata tgcagtagtc      1920
     tatatcgatg atgttctaat tgtatcaaat tccacagatg aagcattcga aaggttagag      1980
     gcagtgttga gcgtgttatc aaagtcgggg ttttctttca atgtaaagaa atgtcagttt      2040
     ctgcacacag agatagaata cttaggtttt ctaatcaggg acggtgagct aaaacccaac      2100
     cctcgaaaaa tccaagcact aactcaacta cctaaaccag cttcagtcac acagattaga      2160
     cagttcatag gattatcatc ctatttcagg caattcgtac ctagattttc agaagtaatg      2220
     aagccgctat atcaattaac ttcaaagtca aatgcattcg agtggaaaga gcagcatgag      2280
     gaaattcgtc aaaaaatcat taaggtgcta actagtgacc ctgtgttgat tatattcgat      2340
     cccaagtttc cagtcgaatt gcacacggat gcaagcgcta atgggtatgg cgctatgtta      2400
     atacacaagg tggatggcaa gcgtagagta gtcgaatact acagtaaatg caccacgttg      2460
     gcagaatcca aataccactc atacgagctc gaaacattgg cggtgtataa tgctatcaaa      2520
     cacttccggc attacctaag cggtagaaaa ttcaccgttt acacagattg taattccatc      2580
     agagcgagtc gtgaaaaagc agcattaacc ccgcgggtgc atcgatggtg gtcattcatg      2640
     cagcccttcg aatttcaggt agagtacaga aaggggagcc aaatggctca tgttgattgc      2700
     ttatcaagaa atcccgtcga agttgttgcg caggcaaatg caagcaaagt tgtggaagta      2760
     cgagttgact tggcaactat cactcacaac tggcttgtat ctgaacagca gcgtgatcaa      2820
     aatatatcca gaattatgac cgaattgaat agtgacgaaa tgcagaaaga gctagcaaac      2880
     acctacgaaa ttagaaaaag tttgttgcat cgcaatattc aaagaaatgg caagactcga      2940
     tgtttgcccg ttgttccgag ggcgttcaga tggtctgtta ttaattacat tcacgaagct      3000
     ataatgcatt taggctggca aaaaactcta gataaggtct acgagcaata ctggtttgag      3060
     aacatgtcga aatatgttcg aaagtttgtt gaaaattgcg tgacgtgtaa attgtcgaag      3120
     tcagcgtcag gtaaaacaca attagaattg caccccatac ccaaagtcga gataccgtgg      3180
     catactttac atatcgacat aagtggtaaa ttaagtggaa aaaaggacga gaaggaatat      3240
     atcattgttc aaatcgacgc attcacaaag tttgtctact tgtaccatac atggaattta      3300
     gatactgcaa gctgcataca gtctgtgaag tccgcgatat cgatatttgg tgttcccagc      3360
     aggattatag ctgatcaggg aagatgcttc acaagtagcg agtttcgtaa gttttgttcc      3420
     acgaataaaa tagatttaca tgtgatagcg acaggtgcaa gcagagcaaa tgggcaggta      3480
     gagcgggtga tgagtgttct caaaggcatg ttaacggcgg tggagactag cgagcgttcg      3540
     tggcaggagg cgttaggcga aattcaatta gcaataaatt gcactacaaa ccgagtgact      3600
     aaacatagtg ctttggaatt gttgataggg aaagaggcga ggccaatggg aatgttgacc      3660
     atcaatgaag acatgcgaat agatctcgag aaagctagag aaaatgctaa aaacaacatt      3720
     gataagaatg caatgtacga gaaagaaaga gttgataaga agcatgcccg agttgtaaaa      3780
     cataaggttg gcgatcatgt tttattaaaa agtgaagagc gacaccaaac taaattagat      3840
     ccaaaattta aaggtccatt tgttattgta gaattgcttg atggtgatcg atatttgttg      3900
     aagtcattaa ctacaaagcg gatgtataag tatccacatg atagtgtacg cagtctacct      3960
     gatgagcggg aggctattga gttgattgaa gagtttgacg atggcgagag ggacaaaatc      4020
     aataagacct aagagaggca caagtagaat cacatacaaa gactaagttt aagttttggt      4080
     tatggtcaga ctgtggtatg agaaaattgg tatccaaatg gttgagttta tgcagaagag      4140
     agcggtgtac tctaattgta atgtgaatag cctgctaaac taacatttga tgatctgaga      4200
     attggtagcc agacgattga gcttgagcgg aagagagctt gtactcttga tgtcatgtaa      4260
     aaggttatcc tgctaagcta atgtctgatg gaatgtaaag ttgatatcca aattgttgag      4320
     tttgtgcgga agagagcttg tactctaaga gaaattgtga aaggttatcc cgacaaacta      4380
     acatttgaag acacgagaag tgtaagaaaa tttgtgttga catttgagtt aagtatcata      4440
     agaaaagaag tcaagtgatg tactagaaat taatgaaaaa tgaagtttaa tgccaatctt      4500
     aagttaaact aagtaacacg aggtcgtgtt aaggtcagga aggccg                     4546
//
ID   Gypsy-34_DEl-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DEl-I;
KW   Gypsy-34_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-306
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3098-3098 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 306 BP; 108 A; 50 C; 82 G; 63 T; 3 other;
     tgtcggagat taatttgaaa tataatgwag aaatattatt tgtaagtctc tgagtgtatt        60
     gaataaacga agttaaaaag aaataaggaa gagagaagct tttgaatgag agcgcggtgg       120
     ggaaggagag cgaaatccct actgagcgtg gcgcaatgag aggtagagaa taatgagcga       180
     gaggaaggca gttcaagaaa gcctgcgaaa cggaacagac gctcgtgcag agaaaccatt       240
     gcgactcgct gcgctgaaam atatwtttcc ataatggcag acgaaccaga ccccctatct       300
     cctaca                                                                  306
//
ID   Gypsy-34_DMel-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 25.03, Created)
DT   21-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-364
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 20(3), 741-741 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 364 BP; 101 A; 91 C; 95 G; 77 T; 0 other;
     agttaaccca agcggttctc acggagtaaa agtgcagaat tgcaagccat atccggtggc        60
     ctgcacgcgc ggtcaggaaa atgctggccg tgcactccag ggccaacggc cgggagcccg       120
     tccggagcac tcgcggagcg agtgatcaga ccggacgaag aactgctgac ctggctcttt       180
     ggcggcagcg ctgcagcggg ccggagccct caagctgcag ctagatcgta atttagttta       240
     gtaataattt gtactcctga gcgtaagctt tgaaataaca tattccagaa attaccctca       300
     ccctaacggg tgtgtggaaa taaaggatca ataataaata atcaaccaac cgacttttat       360
     aatt                                                                    364
//
ID   Gypsy-34_DWil-I repbase;    DNA;    INV; 5633 BP.
XX
AC   scaffold_181096;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DWil_;
KW   Gypsy-34_DWil-LTR; Gypsy-34_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5633
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181096; Positions  694345  699977.
XX
CC   Positions [4732-5208] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           879..2297
FT                 /product="Gypsy-34_DWil-I_2p"
FT                 /translation="MPLIRSNEELSVLPEAECTICLKALLETEELRITKCN
FT                 HVFHQECIENYIQEHQECNFCKKLCHQKDLVQFIMSDQAEGPIINKNRKTH
FT                 NTRAQSQSSNVASPASQLKSGGRGRKPKSSTARKPENSNQQRSARSQQQSI
FT                 SNRAAEINVNSIFERMEYLIDQRLGNLNLNNSVGRSNNHDDRVPTPRSDSV
FT                 SHHYINPGKAAQLVQSWGIKFDASPKGPTVSEFLYRIKALTVDNFQSDFTP
FT                 VCRNLHLLLTGRAKEWYWRYRKEHDEVIWEEFCMDLKQEYDDFKDDDLILE
FT                 ETRNRKQRNGEAFDVYYEDVMTLISRLVIPLEEKRLVHQLQRNLISEVREA
FT                 LLYVPIESVSKLRQLVHRREQFLREESGKRITKYTNVRKNIALLEETDENP
FT                 EEEDIQPELNAIQVKEKKYICWNCDIEGHRWDMCLEERRIFCYGCGKKNVY
FT                 KPQCDVCLSRSKNSNQGPSFRRSRVDPQ"
FT   CDS           3097..5577
FT                 /product="Gypsy-34_DWil-I_1p"
FT                 /translation="MYKEIDRMLEMGVIERANSPWSSPMRLVIKPGKVRLC
FT                 LDARKINEVTKKDAYPLQSIDGIFARLPKANFITKIDLKDAYWQIALSEKS
FT                 KPITAFTIPGRPLYQFTVMPFGLCNASQTMARLIDDLIPADLKYCVFGYLD
FT                 DLCVVSEDFDTHLEILIRMSQKFRKANLTLNIEKTKFCVTEVPYLGYIIGR
FT                 GGISTDPAKIEAIKTWPIPKTIKETRGFLGVVGWYRRFIDNFSDITFPITQ
FT                 LLTKKKKFLWTQEAQIAFEKLKEKLTSAPILINPDFNKKFFVHCDASNYGI
FT                 GAMLVQLDEEGAEKPIAFMSKKLTTAQRNYSVTERECLAALEAIEKFRCYL
FT                 ELQEFEVITDHASLVWLMRQSDLKGRLARWAMKLQGYKFEVSHRRGQDNVV
FT                 PDALSRMFSEDLCALEELRPLVDLNSPSFNDEEYQQLRQKIEKEQERYPDL
FT                 KIIDQFVYIRTEHDDGTESSQVNIWKLWIPQSLSKEIIKRAHEDTISAHGG
FT                 MAKTLELIRRTFFWPGMVVQVRDYIRNCETCKSTKAPNQILKPPMGKPAVS
FT                 ERPFQRLYIDLLGTYPRSKRGHIGLLIVVDHLSKYHWLQPLKVFKSNVIQE
FT                 YLQDNIFFRYGVPEILVSDNGSQFKASELNAWLTTLGIKHIYTAVYSPQSN
FT                 ASERVNRSIIAAIRAYLKEDQREWDLHIPAISCALRNSYHQSIGCSPFHAL
FT                 FGFDMATHGSQYTLLEKINMLNESNNVLRKDDQLALRRNFLKKNIAQAAEQ
FT                 NAKVYNLRTKEVNFKVGQEVFRRNFGQSNFQKCVSAKLNLLWLKSRVRERL
FT                 GNCYYVLEDLNGKLIGTYHAKDIRQ"
XX
SQ   Sequence 5633 BP; 1886 A; 1006 C; 1152 G; 1589 T; 0 other;
     taattttggc gcccaacgtg gggcttgtta gacttgtata cagtttctcg gttcaatcgt        60
     gtttctttat aggattcagg ctgaactgaa gggttcaaga atttcaggtt cctttttcct       120
     tcttctactt cttattctat ctcttaataa aatccccagc attttaatct atcctttgct       180
     atcaaaaatt tttattttcc tttcatttcg ctttcttttt gtattcacgg atagttggtt       240
     gagtgactta ttcattagga atgcagatat ttggagaatc cgagttctga ccagtgataa       300
     ggcgcttgag cattaatcgg tgaatatact tagaaacata tacaaactct acaaaatagt       360
     aacagacgta tattataggc tgtgtttttc ttggaattcg ttaatttttg attgtttcga       420
     ttttacgacc agaaagcaca ataggcttgt gatgtcggcg ttagcattgt agtttattga       480
     ttccattcat ttcttgtaat tacaatagaa caaatgcttc agcggatgtc aatgaattga       540
     ctgcttgttc atctggaatg cagagatttg gctaggcccg aattctgacc gatgatacaa       600
     agtgagttca gtttatgatg ttggttgaaa ttagtctttt tgttttggat ttgatataga       660
     tgattaggtc tagaacgaca agttttctct atcccttcac atataaattt ctgagattga       720
     actatccatt agttcaattc tccctctata ttagtaccgc acctataatt ttgctcaccc       780
     tcactttcaa aacaaggaag ataatcgtta tatgatataa tatattaaaa caaattaaat       840
     aaagtatcta aagtaatttt tgtggaaaaa taatcaaaat gccactaatt cggagtaatg       900
     aagaattgag tgtgctacca gaagcagaat gtacaatttg cttgaaagcc ttattagaaa       960
     cagaagagct taggattact aaatgtaatc atgtttttca tcaggagtgt atagaaaatt      1020
     atatacaaga acatcaggaa tgtaattttt gtaagaaact atgccaccag aaagatttag      1080
     tccaatttat aatgtcagat caagccgagg gtcccataat taataaaaac aggaagaccc      1140
     ataatactag agctcaatca caatcaagca atgtagcatc tccggctagt cagttaaaat      1200
     caggaggtag aggtagaaaa cccaaatctt ctacggcacg taaaccggag aactcgaatc      1260
     aacagcgttc agctcggtca cagcaacaat caatttcaaa tcgagcagct gagataaatg      1320
     ttaattcaat ttttgaaaga atggaatatt taattgatca gagattggga aatttgaatt      1380
     taaataattc agttggacga tctaacaacc acgatgatcg cgttccaacc ccaagatcag      1440
     attcagtatc acaccattat attaatcctg gaaaagccgc ccaattagta caaagttggg      1500
     gtattaaatt tgatgcgtct cctaaaggtc ctacagtatc agagtttcta tacagaataa      1560
     aagcattaac tgtagacaac tttcagagtg attttacacc ggtatgcaga aatttacacc      1620
     tactgttaac cggaagagcc aaggaatggt attggcgtta tcgaaaagaa catgacgaag      1680
     ttatttggga agaattttgt atggatttaa aacaagaata cgacgatttt aaggatgatg      1740
     atttgattct tgaagaaaca cgtaaccgaa aacaaaggaa tggtgaagca tttgatgttt      1800
     actatgaaga cgtaatgact ttgatatcga gattggtaat acctttggag gaaaaacgac      1860
     tcgtacatca gctacaaaga aacctgattt cggaagtacg agaagcttta ttatacgttc      1920
     caattgaatc ggtatctaaa cttcgccagt tggtgcaccg ccgagagcaa tttctccgtg      1980
     aagaatcagg aaaacgcatt acgaagtaca caaatgttag gaagaatatc gctttactcg      2040
     aagagacaga cgaaaatccc gaggaagaag atattcaacc ggagttaaat gcaattcaag      2100
     tcaaggaaaa gaaatatatt tgttggaatt gtgacatcga aggacacaga tgggacatgt      2160
     gcttagaaga gcgccgcatt ttctgctacg gatgtggaaa gaaaaatgtc tacaaaccac      2220
     aatgtgatgt atgcctatcc cgttcgaaaa actccaatca gggcccatca ttccgtcgca      2280
     gccgagtgga ccctcagtag atgtcaagaa taacacagcg acgaacaaca taacatcaga      2340
     tttgacaaat aaaatttagc cgtatcccag actaccatac catcaacggc tgcaaaacta      2400
     tttagcgatt cgagataaaa tatttgcaca ggaggttgca acttgccagt ttattaggag      2460
     tcactcaagc gaacgtctgc gtcgcttttg gaagaaagta aaagatgtcc aaaaacgaat      2520
     aatagcgtct atgattaacg aagccgcaga tggccgtacg ctccagtaaa gtttctcgaa      2580
     ttttctgagc ttggtctatt ggatactgga gccaatatca gttgtatcgg atcagattta      2640
     gcagcaaaag agtggacgaa atatcccgga ttttcaacta ttgtttcaag tgtggcaaca      2700
     gcagatggga aaagacatcc agttaccgga ataataagaa cagaggtgca atacgaaagc      2760
     aagcgaaaac ctctttctct ttttattatc ccgtcattag cgaaacgagt tattttagga      2820
     atcgatttct ggaaatcttt tgagttatgt ccagaatttt catctcgttg taagactagc      2880
     atattagata aaaatattca ctcgattgat gacgaaaaga aatgtttatt aaacccagag      2940
     caagaaaaaa gattaaacga tgtgattcaa ttgtttccgg attttaaaca acagggatta      3000
     ggccgaactc cacttattgt tcatgacata gagatcaaag aagcaactcc aatcaaacaa      3060
     cgcttctatc ctgtgtcgcc agcggttgaa aagttgatgt ataaagaaat cgaccgaatg      3120
     ttggaaatgg gagtgatcga gagagccaat agtccttgga gttctcctat gcgtctggtt      3180
     ataaaacccg gaaaagtgcg attatgtttg gatgcaagaa aaataaatga agtcaccaaa      3240
     aaggacgcat atccgctgca aagcatagat ggaattttcg cgcgactgcc caaagcaaac      3300
     tttataacaa aaattgactt aaaagatgcc tactggcaaa ttgctctttc agaaaaatcc      3360
     aaacccataa cagctttcac gatacccggc cgccccttgt accagttcac tgtaatgcca      3420
     ttcggattat gcaacgcttc gcaaaccatg gcacgattaa tagacgatct aattccagca      3480
     gatctgaaat actgtgtgtt cggataccta gacgatctct gtgtggtgtc agaagacttt      3540
     gatactcatt tagaaattct aattcgtatg tctcagaaat ttagaaaggc aaatctaact      3600
     ttaaatatag aaaaaacaaa gttttgtgtt acagaagtgc catatctggg ctatattata      3660
     ggaagaggag gaatttcaac agaccctgct aaaatagaag caataaagac ttggccaatt      3720
     ccgaaaacga taaaggaaac cagaggtttc ttgggtgttg ttggttggta tcgtagattc      3780
     attgataatt tttctgatat tacatttccg ataacccaat tactaactaa gaaaaagaaa      3840
     tttttatgga cacaggaagc tcaaattgcc ttcgaaaaac ttaaggaaaa gcttacctct      3900
     gcaccgatct tgatcaatcc agacttcaat aagaaattct tcgtgcattg tgatgcaagc      3960
     aactatggca tcggagcaat gttggtacaa ctggacgaag aaggagctga gaaacctata      4020
     gcatttatgt cgaagaagtt aacaacagct caacgaaact atagcgtaac agaacgcgag      4080
     tgcttggctg ctttggaagc aattgaaaaa ttccgctgct atctggaact acaggaattc      4140
     gaagtcataa ccgaccacgc cagtttagtt tggttgatgc gacaatcaga tttgaaagga      4200
     agactcgcga gatgggccat gaagctgcaa ggttataagt ttgaagtaag tcaccgacga      4260
     ggtcaagata atgtagtacc cgacgccttg tccagaatgt tttcagagga tttgtgtgct      4320
     ttggaagaac ttcgcccctt agtcgatttg aactctccta gtttcaatga cgaagagtat      4380
     caacaactaa gacagaaaat tgaaaaagaa caggaaagat acccggattt gaaaataata      4440
     gatcaatttg tttatatacg cacggagcat gatgatggaa cagaatccag tcaagtcaat      4500
     atttggaaat tatggattcc acaaagtttg tccaaagaaa ttataaaacg agctcatgaa      4560
     gacacgatat ctgctcatgg cggaatggca aaaactttgg agctcatacg tcggacattc      4620
     ttttggcctg gcatggtggt acaggtgcgt gattatatac gaaactgtga gacgtgcaag      4680
     tcaacgaaag cacctaacca aatcttaaag ccaccaatgg gtaagcccgc agtatcagag      4740
     agaccttttc agcgattata tattgatctt ttgggaacat atccgagaag taaacgtggt      4800
     catatcggac tcctgatagt ggttgatcat ttatcgaagt atcattggct tcaacccctt      4860
     aaagtattta agagcaatgt tattcaagag tacctgcagg ataatatatt ctttagatac      4920
     ggagttcccg agatattggt tagcgacaac ggatcacaat tcaaggcaag cgaattaaat      4980
     gcatggttga cgacgttggg tataaaacat atatatacag cagtttattc cccacagtcg      5040
     aatgcctctg agagggtaaa cagatccata attgcagcaa tacgcgccta tctcaaagag      5100
     gaccagcgcg aatgggatct acacatacct gctataagtt gtgcactaag gaattcgtat      5160
     catcagagta taggatgctc tcctttccat gctttgtttg gctttgacat ggccacacat      5220
     ggttcccaat atactcttct cgaaaagatt aacatgctga atgaatcgaa taacgtgttg      5280
     cgaaaggacg atcagttagc attacggcgt aattttctca agaagaatat agcacaggca      5340
     gcggagcaga atgcaaaggt atataatctg agaaccaagg aggttaattt caaagtagga      5400
     caagaagtct ttagacgtaa ttttggacag agtaatttcc aaaaatgcgt tagtgctaag      5460
     ttaaacttgt tgtggttaaa gtctcgagtt cgagagagat taggaaactg ttattatgtg      5520
     ttagaggatt taaatggtaa actgatagga acctatcatg ctaaggatat taggcagtaa      5580
     ctgtcttttt tcaggttaat actccgaagc aagctctagt attatcctgt ggt             5633
//
ID   Gypsy-34_DWil-LTR repbase;    DNA;    INV; 1800 BP.
XX
AC   scaffold_181096;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_DWil_;
KW   Gypsy-34_DWil-I; Gypsy-34_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-1800
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181096; Positions  692545  694344.
XX
SQ   Sequence 1800 BP; 540 A; 326 C; 356 G; 578 T; 0 other;
     tgtagtgccc agtttctgcc gttagtttta tttttaaatt ttaaggcgtt agtttgtatt        60
     tcagtagtgg tgggtaattg tgtcgataaa agtaatcagc tgagcttaga agttcgatag       120
     ttttactagt gcaaccctag cgaaatagca tcatgcgcga tcgcatgcat tggtcacact       180
     cttttctgac gaacttccgc cctggctaga cgcataaacc acgctgttcc tccagaattg       240
     atttaaaaat ttaaatctga aattttcttg gccatcaagc caaattatta aataaatatt       300
     aatctggagc atataggaca acaattattg tggagttttg tgaatcttat tatcgtaagt       360
     taaatttttg tggatatttg aatctttgga agtttctaat aagttctttt ggaaacttag       420
     ccctaatcaa attgaatgct gaaagcctaa gcaaggaatt ttatatttga attccgagaa       480
     tttgccaggg ataaattttg agacaccgtg ggctcaaaaa ctgcacaccg tgaagggcac       540
     agagacattt cgacaaagtc gaccagcttg gagtagccgc ccgaatcgga tacgggcaga       600
     gaagtttctt cgtgcggatt gagagtccct tagaccgaat ttgttgcata ggaatgccag       660
     acgcttgatt taacctaaca ttttattcct aagcatcatc cagcggacga cgaaggcctt       720
     cgacggaccg gacggatggg taagtcctaa gttcttgaaa aaatcatgtt cgatctggta       780
     attccctgtt tgtatgcaaa aagaatacta gttcagtgtc aaataatcag caaataagaa       840
     aaaattctct cgcgtacagt aaagctaaag aaaagatcaa agaaaaaaga aaattgccaa       900
     tcagtgttga gaaattaaat cgatattaag aatcgccctt gactgtgtga gcgagcctgc       960
     agttatttat aattaatctc ataatttaag ttggagactt ccaaattcca attcacattt      1020
     tcatttttga atatctataa gtttatatat atccacctta caattaagat ttcacaaaac      1080
     aaaacatatt atccctaatt tggcttttgg atgcctgaaa tgatccaatt atttaatttg      1140
     attaccgtag attataagaa tcatcatttt agtttagtca actcggatta tgtttccgac      1200
     ttattgaagt attttggtat tccgtaaccc tcgtgaataa atatcatttg taatgtttgg      1260
     gtaaaagtta tgtgatcttc cttgtagcga aatgtgagcg gtgagctgaa ttattttggg      1320
     attttccaga atcttgcgaa aggaaaatca ttggttggga gggtttagac gcgaagctat      1380
     aataacatcc tcatagcttc cctattcgtg cgatactaat ataccctttt tctctatcct      1440
     tctagttcat ctcttttggt taaataattg tgtaatattc gtgctctagg gactttgttt      1500
     tattttatgt actacgggtg tattgagtaa agctggtcca aagaaccccc ccaaagactg      1560
     tttgctagcc gacagccaga agtcccaccc ggaccaaact tctcgataca ctaagcccgt      1620
     agaagtgttg gctttggcct aatttgtggt actcttgccc atcataacat ctgatgatta      1680
     gggactgcga gagagaccac caatataggc tgaacctgac ctcttcttgg atcaaagaag      1740
     attctttgac taagagggga tgtacatgat ctggattcat tccgggttgt gtacattaca      1800
//
ID   Gypsy-34_HeAr-I repbase;    DNA;    INV; 4563 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4563
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5581-5581 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..4175
FT                 /product="Gypsy-34_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAEPKRTGIVGLKPPTGLKNLSMEEYKKFMTRFEIYR
FT                 LASGAQTETTETQTALLLHCMGEEAQEIHATFDFEKDQNFNYEKVIQKFNE
FT                 YFIPKKNESVNSHLFFTRNQREGETFDSFYTEIKKLSTECEFGNLLDRMLR
FT                 DKIVTGIADKRLKDRLLRESDLTLTKAIKICKAAELAEEQIKKIDNEPGTS
FT                 TVNSVKKKNRSGSVSEKETRWKKNTRKDKSDKEFTRSTEHRFQEKNKQQQE
FT                 LKTEKMIDCKRCGFHHSIRRCPAYGKKCMKCGKLNHFARKCMAQNTRNIKA
FT                 VQEMHPSDSEESYGTYVVNISNINADKNWYEYVYFTDFNRHLKFKLDSGAQ
FT                 CNVISVSDCNRFGIRTFQKTNCKLTSYSNEKIETLGKVDLTVKIGNKVQNI
FT                 EFQVCKGNYVPILGLPTLIKFNLIQRTTKENIYSVQTKNFDLLHKYKDVFK
FT                 GIGEIKKFEYDIQLKEDWQGKIERTRHIPFKLKDKLKEELSKLERLGIISK
FT                 TEGPTDFVSSLVMTTKQDGAMRICLDPQYLNTQIKREQMMIPNVDEIIAKL
FT                 KDSKYFSTLDANKGFWMIKLTNNSKSLTTFNTPFGRFHFNRLPFGLASSPE
FT                 VFHRVFSEIFKDIDGVEIYIDDILIHAKTEAEHDRILEQVLKKAQEYNIRF
FT                 NRKKCNFKQKEVKYLGHVLTTEGIKIDQNRIKAIVEMEEPKTQKELLRFLG
FT                 MINYVARFIPNVSEVTAPLRQLIKKDVPFVWSKEQDIAYKNLKKLLIEPPV
FT                 LSYFDINKQIVLSVDASKAGLGAVILQEGKPIAYGSRSMTETEIQYSQIEK
FT                 ESLAILYGITKFHQYLYGSIFIVETDHKPLVSIFSKPLNRCPARLQKIRMA
FT                 LQPYSFELKYKPGKELLVADHLSRSHLLDTEENSDLKVETHVAMIMESFRL
FT                 SDEKIEELVKETAKDEELMSVNKYILEGWPENKSQVDSKAKIFYSYRDELS
FT                 NIKGLIVKGRNIVIPKSKRQEILRNIHYAHLGIEKSKILARNSVFWPNMSK
FT                 EIEDLIQNCDTCKSFQNANRKESMIEKEIPERPWEILSIDIFFLYSKPYIL
FT                 IVDAYSKYIEIQPLDDLYANTTIKSIKEILARHGIPEIIYTDAGSQFTSLE
FT                 FKSFSKEWNFKHKIISPKHHQGNGLAERYIQTVKKLLKKLIYDKKDVYLGL
FT                 LMYRNTPITTEGKTPSELLFNRNIKTILPKLINKTDNKDSYRQELNKRQDI
FT                 QKKYYNKGSRNLPELREGEIVKIQDENCRKPHESGIVIGKASGPRSYQVRN
FT                 ESGNMITRNRKMLIKGGKYSDKSRIEEEGNCEVSERQEVQRQIFQGQDIQN
FT                 NIIRDNECIRPLVSDNVTDGRVSRSGRLIKRPSYLIDFI"
XX
SQ   Sequence 4563 BP; 1918 A; 519 C; 871 G; 1255 T; 0 other;
     tggcgctgcg agacaaataa accaacaagg attgaagtca acgcgtaatt tatacgatag        60
     cgattggaaa ttggaaagca cattttgccg caagaaaacg ataaaccacg ctgtgattga       120
     agatggccga acctaaacga acaggtattg taggattaaa acccccaact ggcttaaaaa       180
     atctaagtat ggaagaatac aaaaaattta tgacgaggtt tgagatatac agattagcgt       240
     caggcgcaca aaccgaaacg actgaaactc agacggcatt gttgcttcac tgcatgggag       300
     aagaggccca agaaatacat gctacatttg actttgaaaa ggatcaaaac tttaactacg       360
     agaaggttat tcagaaattt aacgaatact ttataccgaa aaaaaatgaa agcgtcaatt       420
     cacatctatt ttttactaga aatcaacgag aaggtgaaac ttttgatagt ttttatacag       480
     aaataaaaaa actcagcaca gaatgcgagt tcggaaacct attagataga atgctgcgag       540
     acaaaatagt aacagggatc gctgacaaga gactaaaaga tcgcctgctg cgagaaagtg       600
     atttaacact aactaaagcc attaagatat gtaaagctgc agaacttgcg gaggagcaaa       660
     ttaagaagat agacaatgaa cctggaacga gcacagtcaa cagcgttaaa aagaagaata       720
     gaagcggatc agtgtccgag aaagaaacaa gatggaagaa aaatacaagg aaggacaaat       780
     cagataaaga atttacaaga agtactgaac atagatttca agaaaagaat aagcagcaac       840
     aagaattaaa aacagagaag atgattgact gcaaaagatg tggattccat cacagtatca       900
     gaagatgccc ggcatacgga aagaaatgta tgaaatgtgg taagctgaat cattttgcaa       960
     ggaagtgcat ggcacaaaat acaagaaaca taaaggcagt tcaagaaatg catccaagtg      1020
     acagcgagga atcatatggc acgtatgtag taaacattag taatattaat gcagataaaa      1080
     actggtatga atatgtatat ttcacagatt ttaatagaca tttaaaattt aagttagact      1140
     caggtgcaca atgtaatgtc atttcggtga gtgattgtaa tagatttggg ataagaactt      1200
     ttcaaaaaac taattgtaaa ctgaccagtt atagtaatga gaaaatagaa acattaggaa      1260
     aagtagattt aacagtgaag ataggtaata aagttcaaaa tatagaattt caagtgtgca      1320
     aaggtaatta tgtacctatt ctaggattgc ctactttgat aaaatttaat ttaattcaga      1380
     gaacaactaa agaaaatatt tacagtgttc agactaaaaa ttttgatttg ctacataaat      1440
     ataaggatgt ttttaaagga ataggtgaga taaaaaagtt tgagtatgac attcaattaa      1500
     aggaagattg gcaaggaaaa attgaaagga ctagacatat accatttaaa ttgaaagata      1560
     aattaaagga agaattaagt aaattagaaa gattaggtat aataagtaag acagaaggtc      1620
     cgactgattt tgtaagttca ttagtaatga caactaaaca agatggagct atgagaattt      1680
     gcttagatcc tcaatatcta aacacacaga ttaaaagaga acaaatgatg attcccaatg      1740
     ttgacgaaat aatagctaag ttaaaggata gtaagtactt tagtacccta gatgcgaata      1800
     aaggtttttg gatgataaaa ttgacaaata atagtaaaag tttaacaaca tttaatactc      1860
     catttggtag atttcatttt aataggttac cgtttggttt agcatcaagc ccagaagttt      1920
     ttcatagagt tttcagtgaa atttttaaag atattgacgg agtagaaata tatatagacg      1980
     atattttgat tcatgccaaa acagaagctg aacatgatag aatactcgaa caagtactta      2040
     aaaaagctca ggaatataac attagattta atagaaaaaa atgtaatttc aaacagaaag      2100
     aagttaaata cttaggacat gtactaacta cagaaggaat taaaatagat cagaatagaa      2160
     ttaaagctat agtagagatg gaagaaccta aaactcagaa agaattgtta agatttttag      2220
     gaatgataaa ttatgtggct agatttatac ctaatgtgtc tgaagtaaca gcaccattga      2280
     gacaattgat taaaaaagat gtaccttttg tgtggtcaaa agaacaagat attgcttata      2340
     aaaatttaaa gaaattattg atagaaccac cagtgttgag ctattttgat ataaataaac      2400
     agatagtact cagcgtagat gcttcgaaag caggattagg cgcagtgata ttacaagaag      2460
     gaaaaccaat agcttatggt tcaaggtcga tgactgaaac agagatacaa tatagtcaaa      2520
     ttgaaaaaga gagtttagca attttgtatg gaataaccaa gtttcatcaa tatttgtatg      2580
     gtagtatatt tatagtagag actgatcata agccacttgt ttcaattttt tccaaaccac      2640
     tgaataggtg tccagcaaga ctacaaaaga taagaatggc tttacaacct tattcatttg      2700
     agttaaaata caaaccagga aaagagttgt tagttgcaga tcatttgagt agatctcatt      2760
     tattagacac agaagaaaac tcagatttaa aagtagaaac tcatgtagca atgataatgg      2820
     aaagttttag attatctgat gaaaaaatag aagaattagt gaaagaaacg gctaaagatg      2880
     aggaattaat gtcagtaaat aaatacatat tagaaggatg gccagaaaat aagtcacagg      2940
     tagatagtaa ggctaaaatt ttctatagtt acagagacga gttgagtaat attaaaggat      3000
     taattgttaa aggtaggaat atagtaatac ctaagtctaa aagacaagaa atattaagaa      3060
     acatacatta tgcacattta ggcatagaaa aaagtaagat actagctaga aattcagtat      3120
     tttggccaaa tatgagtaaa gaaatagaag atttaattca aaattgtgac acttgtaaaa      3180
     gttttcagaa tgcaaatagg aaagaatcta tgattgagaa agaaattcca gaaagaccat      3240
     gggaaatatt gtctatagat atattttttc tatattcaaa accatacata cttattgttg      3300
     atgcttacag taaatatata gaaattcaac cattagatga tctatatgca aatactacaa      3360
     ttaaaagtat taaagaaatt ttagcaagac atggtattcc agagattatt tatacagatg      3420
     caggaagtca attcacaagc ttagaattta aaagtttttc taaagaatgg aatttcaaac      3480
     ataagataat tagtccaaaa catcaccagg gtaatggttt agcagagaga tacatacaaa      3540
     cagtcaagaa attgttaaaa aagttaattt atgataagaa agatgtatat ttaggtttgc      3600
     taatgtatag aaacacacca ataaccacag aagggaaaac accttcagaa ttgttattta      3660
     ataggaatat taaaaccatt ttgccaaaat taattaataa aacagataat aaagactcat      3720
     atagacagga acttaataag aggcaggata ttcagaaaaa gtactataat aaaggaagta      3780
     ggaatttacc agagttaagg gaaggagaaa ttgttaaaat acaagatgaa aattgtagga      3840
     aaccacatga gagtggtata gtgataggta aggctagtgg tcctaggtca taccaagtaa      3900
     gaaatgagtc aggaaatatg ataacaagaa ataggaaaat gttaattaaa ggaggaaaat      3960
     attctgataa gagtaggata gaagaagaag gtaattgtga agttagtgag aggcaagaag      4020
     tacagagaca gatatttcaa ggacaggaca tacaaaataa tataataaga gacaatgagt      4080
     gtataagacc gttagtttct gataatgtta ctgatggtag ggtgtccagg tcagggagat      4140
     taattaaaag accaagttat cttatagatt ttatttaatt aataagttta aatactgatt      4200
     taaaagttga aagattttgg tttagttatt aagttaaaat gttaattaat aagttgatta      4260
     taaataagtt taaagattaa gaaactgtat catgctgatt aagaagtatc ttgtagaaat      4320
     acaaaggttg ttaactgtca ttgagtaatt tccatattag tagtaaacaa ataaataatt      4380
     aaaataacta aataattaag gagttgtgta tcttgtatta atccactata gtttgatgtg      4440
     ttaaaataat aattttgtaa gtaaaggtta actgtaaaac atctaatgct cttgtagtaa      4500
     agtaattctg tgttgataat gttaatgttg aattgagtct taagaaaatg taaaagggaa      4560
     gga                                                                    4563
//
ID   Gypsy-34_HeAr-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-188
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5611-5611 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 188 BP; 67 A; 23 C; 29 G; 69 T; 0 other;
     tgttgtatta gtaagtttaa tattataatc tatgatagtt tagttagttg gtgacaacac        60
     tagcagtaag gaactacact actaaactgt ctaatggctg atctgtaagc tgattgtaat       120
     catgtttgtg ctcctaataa atataatcta aaaatatcta aatgatgttt gattataaca       180
     tcataaca                                                                188
//
ID   Gypsy-34_LMi-I repbase;    DNA;    INV; 4054 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4054
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..857
FT                 /product="Gypsy-34_LMi-I_1p"
FT                 /translation="MPDTQPIADAPTSALINTVAVKPPPFWRQNPVLWFAQ
FT                 LESQFVLAHVTVDDTKYSYVVAALNEDLATEVQDILASPPSTDRYSTIKNA
FT                 LITRLSQSETKRLEKLLRTEELGDRTPSQLLRRLRTLANNAVNEDILRNIW
FT                 LSRLPPDAQKILTVCAGDLDALAQTADRIVEMYPSASVAAVSSPTDNTLTA
FT                 LQAQVAELTAQIAALRTQCSNRQSRRHRSPRRRSRSPSAVKLCWYHKRFGS
FT                 EARKC"
FT   CDS           900..4034
FT                 /product="Gypsy-34_LMi-I_2p"
FT                 /translation="MTATGSPDGSRRLFVTEQDTKLQFLVDTGADVSVYPC
FT                 SRLPRRSKDDCCLFAANGSRIQTYGRVTLSLNLGLRRKFDWQFTVADVTHP
FT                 ILGADFLSFYGLLPDLRHRRLLDTTTNLVSQGHLRCVEATTIRMIAGDSPY
FT                 EELIKQFPEITRQLPTLAPVRHTTVHHILTTPGPPVHARPRRLKPEKLKVV
FT                 KQEFSFMLAQGICRPSSSSWASPIHVVPKKNNGWRPCGDYRQLNTRTIPDR
FT                 YPVPHIEDFAFNIHGKCVFSTLDLVRAFYQIPVASEDIAKTAVCTPFGLFE
FT                 FTRMPFGLCNAAQTFQRFMDEITRDLDYCYVYIDDVLVMSVSEAEHLEHLR
FT                 QVFTRLRSHGLLINPSKCVFGAAEVQFLGYTINAHGIQPPQEKVEAITNFP
FT                 RPVTVRELRRFLGTINFYRRFVRNHALLAAPLNELLRGAPKPNDKLSWTSE
FT                 AETAFTKVKTALAEATLLAHPVPQAQLALMVDASATAIGAALQQKVDQHWQ
FT                 PLAFFSQKLSPSQQSWSTYDRELYAAYASIRKFRHMLEGQQFTLVTDHKPL
FT                 TYAFRQKPDKASPRQLRHLDYIGQFTTNIVHVEGEMNIPADALSRVEAIAR
FT                 AIDYEALAATQQSDAELHNLQTSGLQLRQIQVPPTNAWLYCDVSTSKVRPF
FT                 VTAPFRQQAIASLHDLSHPGVRGTLNLVKRSFVWPNMDKDVKEYVRQCMAC
FT                 QRNKISRHVRAPLGTFMPPNQRFEHVHLDIIGPLAPSEGYTYCLTAIDRFT
FT                 RWPEAFPMADITAETVATTFFRGWIARFGVPLRITTDQGRQFESYLFKALA
FT                 VLLGMKRIRTTAYHPAANGLVERLHRQLKASLRCHESQRWTETLPIVLMGL
FT                 RASIKEDIKATAADLVYGQPIRLPGEFLHNMSDDLVEASDFVCKLRSQIRE
FT                 LRPVASREQKTRRSFIFSDLWKCDHVFVRHDAVRKPLQSPYDGPYPVLSKD
FT                 EKTFKVDIKGTPTAISIDRLKPAFCTTHPDSSTEPVTPSTSTAESTTTPPP
FT                 ATLKPQRTPEVNTDDSPAASAKPVVTRSGRHVRFNRKYR"
XX
SQ   Sequence 4054 BP; 1076 A; 1087 C; 902 G; 988 T; 1 other;
     tttttggtga ccccgacgtg atattcggtg ttaatcgacg cttcgtaaag ttccgtttcg        60
     gacgttacat ttgaaacaac cgcgtcagcc gcgccgcgct tcttccgtgt gattacgcca       120
     tgccggatac gcaaccgatt gctgatgcgc ctacgagcgc attaatcaac accgtcgcgg       180
     tcaaaccacc accattctgg cgacaaaacc ctgtactgtg gtttgcacaa cttgaaagcc       240
     aatttgtgtt agctcacgta accgttgatg atactaaata cagctatgtc gttgcagcgt       300
     tgaatgaaga cttggctaca gaagtacaag atattctggc ttcaccaccg agtaccgatc       360
     gatattcaac aatcaagaat gccttaatca cccggttatc acagtctgag acgaaacgcc       420
     tggagaagct actacgtact gaagagttag gtgatcgcac accttcacag ttgctgcgcc       480
     gcttgcggac attggcaaat aatgctgtta acgaagatat tttacgcaat atctggctgt       540
     cgcgtcttcc accggatgca cagaaaatac tcacagtgtg cgccggtgat ctcgatgctc       600
     ttgcacaaac cgcagatcgt attgtggaga tgtatccgtc tgcgagtgta gcagctgtta       660
     gttcaccgac agacaatacc ctcacagcgt tgcaagctca ggtcgctgaa cttactgcac       720
     aaatcgccgc gctacgaaca cagtgttcca accgtcaatc acgacgccac cgctcaccaa       780
     gaagacgcag tcgctcacct tcagctgtaa agctttgctg gtatcacaag cggtttggtt       840
     cagaggcaag aaagtgttaa tcctccgtgt gagaagggaa acgaacacgg aagtcagtaa       900
     tgacggcaac tggctctccg gacggcagcc gtcgactatt tgtcacagaa caagatacaa       960
     agttacaatt cttagtggac acaggtgctg atgtgtcagt gtatccatgt tctcggctac      1020
     ctcgtcgaag caaggacgac tgctgccttt ttgctgcaaa tggttctagg atccagacat      1080
     atggtcgagt gacactttca ttaaacttag gccttcgacg caagtttgac tggcaattta      1140
     cagtagcaga tgtgacgcat cctattctcg gtgcagactt cttatctttt tatggactgc      1200
     ttcctgatct tcgacatcgt cggctcctcg acactacaac taacttagtc agtcagggac      1260
     atttacgctg tgttgaagcc accactatac gaatgatcgc aggtgactct ccatatgaag      1320
     agcttattaa acagttcccg gagatcaccc gacagctacc cacattggca ccggtacgac      1380
     atacgacagt acaccacata ttaacgacgc caggaccgcc agttcacgct cgacctcgtc      1440
     gtttaaaacc agaaaagttg aaagtagtga agcaagaatt ttcatttatg ctcgctcaag      1500
     gaatctgccg cccgtcaagc agtagctggg cttcacccat ccatgtcgtt ccaaagaaga      1560
     acaatgggtg gcgtccgtgc ggtgattacc ggcagctaaa tactaggaca attcccgatc      1620
     gctatccggt gcctcacatt gaggactttg ctttcaacat ccacggcaaa tgtgtatttt      1680
     ctacattgga cttagttcgt gcattttacc aaattccagt tgcctcggaa gacattgcta      1740
     agactgctgt ctgtacccca tttggtcttt ttgaattcac aagaatgcca tttggactct      1800
     gtaatgctgc acaaacgttc cagcgattta tggatgaaat cacacgtgac ctggattact      1860
     gttacgttta tattgatgat gttttagtga tgtctgtctc tgaggcagag cacttggaac      1920
     acctacgcca agtttttacc cgccttcgtt cgcacgggct actcataaat ccgtcaaagt      1980
     gcgtatttgg agcagcagaa gttcagttcc tkggctacac catcaacgct catggaatac      2040
     agccgccaca ggagaaagta gaagccataa cgaacttccc acgacctgtg acagttcgtg      2100
     aattgcgacg atttcttggt acaattaatt tctatcgtcg tttcgtgcgc aaccatgcac      2160
     tcctggctgc tccattgaac gagctcttgc ggggtgcacc aaaaccaaac gacaaactgt      2220
     catggactag cgaggctgag accgctttca ccaaagtgaa gactgccctc gctgaggcta      2280
     cactgttagc acatccggta ccgcaagcac agctcgcctt gatggtagac gcgtctgcaa      2340
     ctgcaattgg tgctgcgctt caacaaaaag tagatcaaca ttggcagcct ttagcgtttt      2400
     tcagccagaa gttatccccg tcacagcaaa gctggtcgac gtatgaccgt gaattatatg      2460
     cagcatatgc ttccatcagg aaatttcgtc acatgctcga aggtcagcaa ttcacattag      2520
     tcaccgacca caagccgttg acgtatgcct ttcgtcagaa acctgacaaa gcatcgcctc      2580
     gccagctacg ccacctggac tatataggac aatttacaac caacatagtc cacgtcgagg      2640
     gagaaatgaa tataccagca gacgccctct cccgtgtaga agcaattgca cgcgcaattg      2700
     actatgaagc actcgccgcg acacagcaat cagacgccga gctgcataat ttacagacat      2760
     ctggcctaca gctccgtcaa attcaagtac caccgacaaa tgcatggcta tattgtgatg      2820
     tttctacatc gaaagtgcga ccgtttgtga cagctccctt ccgacagcaa gcaatcgcgt      2880
     cgctgcatga cttatcacac cctggagtcc gtggtacctt gaacctagtt aaacgatctt      2940
     ttgtgtggcc aaacatggac aaagatgtta aagagtatgt gcgccaatgc atggcatgtc      3000
     aaaggaataa aattagtcgg catgttaggg cacctcttgg cacattcatg ccaccgaatc      3060
     aacgatttga acatgtccat ttagacatca ttggcccact agcgccgtct gaagggtaca      3120
     cttactgcct aactgccatc gatcgcttca cacgctggcc agaggctttt ccaatggcag      3180
     acatcaccgc cgagacagtg gcaactacat tctttcgggg atggattgct cgttttggag      3240
     tacccctgcg tattaccacc gaccagggaa ggcagtttga gtcataccta ttcaaagcgc      3300
     tcgctgtcct attaggtatg aaacgcatcc gaactacagc ctaccacccg gcagcgaacg      3360
     gtttagtaga acgcctacat cgacaactaa aagcatctct gaggtgtcat gagtcacaac      3420
     ggtggacaga aaccctacca attgttctga tgggcctccg cgcttccatt aaagaagata      3480
     tcaaagccac agcagcagat ctcgtctatg gacaaccgat tcgactgcct ggcgaattcc      3540
     tacacaacat gtctgatgat ctggtcgaag cttcagactt tgtctgcaaa ctgcgttcgc      3600
     agattcgaga actacgtcct gtcgcatcaa gagagcaaaa gacccgccgc tctttcattt      3660
     tttcggatct gtggaagtgt gaccatgtct ttgtcaggca cgacgctgtg cgcaaacctc      3720
     tccagtcacc gtatgatggg ccgtatcctg tcctcagcaa ggacgaaaag acgtttaagg      3780
     ttgatatcaa gggtacgcca actgcaatct ccattgaccg ccttaaacct gccttctgca      3840
     ctacccaccc tgattctagc acagaacctg tcacaccttc tacgagcaca gcagaatcga      3900
     ccactacccc accacctgct accttgaagc ctcaacggac accagaagtc aacacggacg      3960
     actcaccagc agcttcagct aaacctgtcg tcacgcgatc cggtcgtcat gtccgcttca      4020
     acagaaaata tcgttgacac tgagggggga gtga                                  4054
//
ID   Gypsy-34_LMi-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   15-MAY-2014 (Rel. 20.01, Created)
DT   15-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-225
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (15-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 225 BP; 66 A; 36 C; 36 G; 87 T; 0 other;
     taaagtgatt gtgtgccatg taattaaatg caaaatgcct tgtcaacgtg tacaaagtta        60
     ttgtgctaca cagcgtcagt gatgatgcat gtttattctc tctgttcaaa taattactct       120
     gttcaaataa ttactctttt gtttatacca gtatgtctct tatctttgta cttgtgatac       180
     gttaattaaa tgttgctgag taagtaaata catcttatcg caaca                       225
//
ID   Gypsy-34_MoPha-I repbase;    DNA;    INV; 5384 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5384
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1112-1112 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..4594
FT                 /product="Gypsy-34_MoPha-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MGRHRSESKKHNEGRPSERDRRHSRRKNRDERYDEES
FT                 PRGSHQQRDRRRRRSDSNRSRSSTRDQGQRRDTSRSNDSSPRERVRQTNDS
FT                 DTRLFFTELIRTLAGTRVEGNKFPTLGNVIPEFDPMNKHQTIQNWLTKVEE
FT                 CAKMYKWDSDQTIHYAIPRLSGVAKTWYQSLPTMSFSWAEWKSKLIESFPS
FT                 SDDYAELLSEMLSRRARFGESLELYFYDKINLLNRVEIKGKRAVDCLLHGV
FT                 DDRTVRLGAKAAKCEEPEQVLKYFQSVKQRQREPEKIKSISDKKLNSTTNN
FT                 HNVSAAESKPRPAVTCYNCNEQGHYSFKCTKKITKCTVCRKLGHQATDCPK
FT                 QPSNDESEVPKEKDVMLVKVDNASDNKYVLNLKINNRPIVGYVDLGSQCSL
FT                 LRYSEAIDLGITWTNDDLPVMRGIGGNIVIPIGVATVNIEISSITETVDVY
FT                 VVNDNVIKYGVLIGHSFTEKPGIVITKTTDSLMFSRNPPNKLALRLRDDVV
FT                 LQCEKLIPISVYCDNEYSGNVYVRGSLRGKPGSEYYLTPGEYGILNGKGRL
FT                 LVQNVSRKIFELQKSLLITRALPIGKCEEIGSLELTDLECDSTLNYGNQLT
FT                 KKELTKLKEMLIKYKTCFSRNLKDLGFTNVAQMEIELTDAKPIVYRPYRLS
FT                 LPERQTVREMVQEMIDADIIKESNSPYASPILLVKKKTGEKRLCVDYRALN
FT                 HKTRKEHYPLPLIDDQLDLLAGNSLFTTLDLATGYYQIPIAEESQDKTAFV
FT                 TPDGQYQYKRMPFGLANAPSIFQRTMNKILAKAKNKFALVYMDDVLIPARS
FT                 FAEGLERLEEVLKLIGESGLTLKLSKCNFFYEQIDFLGFEVSENGIRPGSR
FT                 KTTAVLNFPAPKNVHEVRQFIGLASFFRRFVKNFAFIARPLTDLLKTGSGW
FT                 KWTDEQTKAFDTLKERLIERPVLALYDVKLDTELHTDASKFGIAGILMQRN
FT                 VEGILKPVAYYSRKTTNDEQKLHSYDLETLAVIASLHRFRVYLLGAKFKII
FT                 TDCNALRTTLTKRDLVPRIARWWIQFQEYDCEVEYRQGSRMAHVDALSRNP
FT                 VEVDVNEGRCVFDVLQIDVKDWIATVQSADDEINKIKGILADSETEYVADV
FT                 HKNYKLKGGHVYRIVDNGIKWVVPRGVKWQVLRMNHDNAGHFGFEKTLSRV
FT                 KELFWFPRMRRFVKKYVSACLECAHHKAPGGLKEGLLHPITKVEIPFHTIH
FT                 ADHLGPFIRSRRGNTYLLIIIDAFTKYININAVRDTKTATTIRIFKEHFGY
FT                 FGTPNRLITDRGSCFTSSKFTSFTQKSGIKHVLNAVATPRANGQVERFNRT
FT                 ITDALGARCHGEKDNTWDEYIGEIQLGINTTANKSTGKSPSELLFGCRLIN
FT                 TSENIISDVIYPTSDRIGGNDLINMRSEANEKMRKQQDSAKKNFDKRRKLP
FT                 TQYKVGDLVRIERTLTDKTMLGKPKKLIAKFHGPYRITKILPNDRFLVRDT
FT                 PITRKGNRRYENVIAIDKLHPWLNFNAPTSDDSDKDYDLRNEKDSD"
XX
SQ   Sequence 5384 BP; 1838 A; 1097 C; 1214 G; 1235 T; 0 other;
     tctcagaagt gggataaccc ccgttgaagc caaagatata tacgtacgat cgccaagtgc        60
     catgggaagg catagaagcg aaagtaagaa gcataatgaa ggccgtccgt ctgaacggga       120
     ccgacgccat agccgtcgaa agaatcgaga cgagcgatac gatgaggagt cgcctcgcgg       180
     ttctcatcaa caacgcgatc gtcgccgacg acgcagcgac agcaaccgta gccgaagcag       240
     tactcgcgac caaggacaac gacgtgacac aagcagaagc aatgattcgt cgccaaggga       300
     acgcgtaaga caaacgaacg atagcgatac gcgacttttt tttaccgaat taatcagaac       360
     gttagccggc acgcgagtag agggaaataa attccctacg ttaggtaacg ttataccaga       420
     atttgatccg atgaacaaac atcaaacgat tcagaattgg ttgacgaaag tcgaggaatg       480
     cgccaaaatg tacaaatggg acagcgatca aacaatacac tatgccatac ccagactttc       540
     gggcgtcgct aagacttggt atcagtcctt gccaacgatg tcgttttcgt gggcagaatg       600
     gaagagtaaa ttgatagagt cgtttcctag cagtgacgat tatgccgaac tgttgagtga       660
     gatgttgtcg cgaagggctc ggttcggcga gtcattagag ctctacttct acgataagat       720
     aaatttgtta aatcgcgtag aaataaaagg taagcgcgcg gttgattgtt tgttgcacgg       780
     cgtagacgat cgtactgtgc gtctaggtgc caaggccgcg aaatgcgagg aacccgaaca       840
     agttttgaaa tactttcaat cagttaagca acgacagcgc gaaccggaga aaattaaaag       900
     catttcggat aaaaaactta attccacgac aaataatcat aacgttagcg ccgcggaatc       960
     caaaccgcga ccagcggtta cttgttacaa ttgcaacgag caaggacact acagctttaa      1020
     atgtactaaa aagatcacga aatgtacggt atgtcgtaaa ttgggccatc aagctacgga      1080
     ctgcccgaaa cagccatcca acgatgaaag cgaagtaccc aaggaaaagg acgtaatgtt      1140
     agttaaggta gataacgcga gcgacaataa atacgtatta aacttaaaaa taaacaaccg      1200
     acccattgtg ggttacgtcg acctgggaag tcagtgctca ttgttgagat acagcgaagc      1260
     gatcgatcta ggaatcacgt ggacgaatga cgacttaccc gttatgcgag gcattggtgg      1320
     caatattgtc atacccatcg gcgtcgccac agtcaatatt gaaattagca gcattactga      1380
     gaccgttgat gtttacgtgg taaatgataa cgtgatcaag tacggcgtat tgatagggca      1440
     tagttttact gaaaaaccgg gaattgttat aactaagacg accgattcac taatgttttc      1500
     acggaacccg ccgaataaac ttgctttgag actacgggat gacgtggtac tacaatgcga      1560
     aaaattgatt cctatatcgg tttattgcga caacgaatat tcaggaaacg tatatgtaag      1620
     aggatcgttg cgtggtaaac caggtagcga atattatcta acaccgggcg agtacggaat      1680
     actaaacggt aaaggaaggc tattagtaca aaacgtttca aggaaaattt tcgaattaca      1740
     gaaatcgtta ttgattacgc gcgccctacc gatcggcaaa tgcgaagaaa tagggagttt      1800
     agaattgaca gatttggagt gtgattcaac cttaaattac ggcaatcaat taaccaaaaa      1860
     agaattgact aagctaaaag aaatgctaat aaagtacaaa acatgttttt cgcgtaattt      1920
     gaaggatcta ggatttacaa acgtcgcgca aatggaaata gagttgaccg atgcaaaacc      1980
     catcgtatat cgcccgtacc gactttcgct tccggaacga caaacggtgc gagaaatggt      2040
     gcaggaaatg atcgacgccg acataataaa agaatctaat tccccttacg ccagtccaat      2100
     tttgcttgta aaaaagaaaa cgggtgagaa aaggctgtgc gtggattatc gcgcactgaa      2160
     tcacaagact cgcaaagaac attaccctct gccattaatc gacgaccagc tggatctatt      2220
     agcgggaaat tccttgttta ccacgctaga tctggccacg ggctattacc aaatccccat      2280
     agcggaagaa tcgcaagaca agaccgcgtt cgttactccg gacggccagt accaatacaa      2340
     acgaatgccg tttggactgg caaacgcgcc gtctattttt cagcgaacca tgaataaaat      2400
     tttagctaag gcaaaaaaca aattcgctct agtttacatg gacgatgtac tgataccggc      2460
     gcgctcgttc gcggaaggcc tcgaacgatt ggaggaggtt ctgaaattaa taggcgagag      2520
     cggattgaca ttgaagctaa gtaaatgcaa ctttttttat gaacaaatcg atttcctagg      2580
     atttgaagtt agcgaaaatg gaatccgacc gggttcgcga aagaccaccg ccgtcttaaa      2640
     ctttccagcc cccaagaatg tacacgaggt tcgacagttt atcggacttg caagcttctt      2700
     tcgaagattt gtcaaaaatt tcgctttcat tgcgcgaccg cttactgatc ttttaaaaac      2760
     gggatccgga tggaaatgga cagacgaaca gactaaagct ttcgataccc taaaagaaag      2820
     acttatagaa cgacccgtgc tggcgctata cgacgttaaa ctagacacgg aattacacac      2880
     ggatgcatca aaattcggga tcgcgggcat ccttatgcaa cgaaatgttg aggggatact      2940
     caaacctgtc gcgtactata gccgaaaaac gactaacgac gaacaaaaac ttcattctta      3000
     cgatctcgaa accttggcgg taattgcttc tttgcatcgc ttccgcgttt atttattagg      3060
     cgcgaaattt aaaataatca cggattgtaa tgcattacga actacgctaa ccaaacgcga      3120
     tctcgtgccg cgtattgcgc gatggtggat tcaattccaa gaatacgatt gcgaagtcga      3180
     atacagacag ggctcgcgta tggcgcatgt ggacgcgcta agtcgcaatc cagtggaggt      3240
     cgatgtaaat gagggaagat gtgttttcga tgtattgcaa attgacgtaa aagactggat      3300
     agccacagtt cagagcgctg acgatgaaat aaataaaatt aaaggaatac tggcggatag      3360
     tgaaaccgag tacgtggcag acgtacataa gaattacaaa ttaaaaggag gtcacgtata      3420
     tcgaatagtc gacaacggaa ttaaatgggt agtaccgagg ggagttaagt ggcaggtact      3480
     ccgaatgaac cacgacaacg cggggcattt cggattcgaa aaaacgctaa gtcgcgttaa      3540
     ggagttattc tggttcccaa gaatgcgtcg attcgtaaag aagtacgtat ccgcgtgttt      3600
     agagtgcgca caccataagg cacccggagg tctcaaagaa ggtttattac atccaataac      3660
     taaagtcgaa atacccttcc acaccataca cgccgatcat ttaggtccgt ttattcgcag      3720
     caggcgaggc aacacatacc tgttaataat aatcgatgcg tttacaaaat atattaatat      3780
     caatgccgtc agagacacaa aaaccgcgac aactattaga atctttaaag agcatttcgg      3840
     ctatttcgga acgccaaatc gccttattac ggaccgaggt tcatgcttta caagttcaaa      3900
     atttacatcc tttactcaaa agtccggaat aaaacatgta ttaaacgcag tagccactcc      3960
     tagagctaac ggtcaagtgg agcgttttaa tcgaaccata acggacgccc taggcgcccg      4020
     atgccacggt gaaaaggata atacgtggga cgagtacata ggcgaaatcc agttaggcat      4080
     aaacactacc gcaaataaat caacgggaaa aagcccttcc gaattattat tcggatgtag      4140
     attaataaac acgtccgaga acataattag cgatgtaatt tatccaacga gcgaccgtat      4200
     tggcggcaat gatctgataa acatgcgatc cgaagcaaat gagaaaatgc ggaaacaaca      4260
     agactccgcg aaaaagaatt tcgataaacg taggaagtta cctactcaat ataaagtcgg      4320
     agatttagta agaatcgaga gaacactaac agataaaaca atgctaggta aacctaagaa      4380
     attaatagca aagtttcatg gcccatatcg tattacaaaa attttaccga atgacagatt      4440
     tttagtcaga gatacgccca taacacgtaa aggcaataga cgatatgaga acgttatagc      4500
     aatcgataag ttacatccat ggcttaattt taatgctccg actagcgacg atagtgataa      4560
     agattatgat ctaagaaacg aaaaggacag cgattaaaag aaatcgaaaa taacgtacaa      4620
     atgttaattg aaaccgagaa agatcttaca aagtaaccga aacatgcgag ttatgagcga      4680
     ttagtgcaga ccacgaataa catcaataga tatcgcacag atgatcgcag atcataacag      4740
     atcacgtgaa aaactattac aaatcgtacc atatgtaaat gcgtaggtcg tgagcgatca      4800
     gtgcaaatca caattaacgc taatagagat tgcacagatg gtcgcagatc atgacagact      4860
     acgcgaagac acacggcata atatataact ttaactacga atgtaggtcg tgagcgatca      4920
     gtgcaaatcg cgattaacgc caataaaaat tgcacagatg gtcgcagatc acgacagact      4980
     acacgaagat agacagcatg atgtataact ttaactacga atgtaggttg tgagtggtca      5040
     gtgcaaccat aaagggtata gtacggatga ccacagatcg caacagacta cacagaatta      5100
     caagttttag atatgaacac gtaatatagt aatgtaattt gcacattgta cagacgcgaa      5160
     agtcgtaagt aatcagtgca aaacgagagg cacagataat tacagattac gatagattac      5220
     ataagactgc gattatattg taactctgta ttgttacttt aagaaacctg tgaattataa      5280
     cattgatcga tacctcaagc aaatactatg gtcagaatta aatgcaaaca aatcatacat      5340
     ccactccgga gtgagaggac tcactcctaa caggacggcc gagc                       5384
//
ID   Gypsy-34_MoPha-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1198-1198 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 206 BP; 63 A; 57 C; 53 G; 33 T; 0 other;
     tgtaagacca gtcagtcgtg ttagcacaac cgatcacacc gagagcgaga ctagatggcg        60
     cggcggcacc gacgtgcaga cgccgcaagg gggagccccg cagagagtca gtctgcacgc       120
     aaaaagcgac ctgacacgca cgatagtcaa taataagcaa taataagagg ttaacccgag       180
     ttctgttcat tctaacaccc cttaca                                            206
//
ID   Gypsy-34_MSe-I repbase;    DNA;    INV; 5607 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5607
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 911-911 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..2503
FT                 /product="Gypsy-34_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase
FT                 (partial)."
FT                 /translation="MDEQRRKRVSHSNVETELPKRQRVTGDSSCRAHNYVG
FT                 AMQSSQQRRNYRENTSSDGSNVTPGPNIIAGCSRNAIHTQPSSTHGDRIVL
FT                 KDHCNETSRRNHSSRNRPRVLRSRNRSRSRNRRRTRSLSRSHSRSRRRSRS
FT                 SSRSHSHSRSRRYSRSLSRSRSLSSSHSLSRRRKRSQSRSNRRSRRSRTGR
FT                 HRRTSRLQGSRLVDIFKNLVQTMKMQDGNERFPVLNVLPEFDPSKRNQTID
FT                 MWISKVNESAQIYKWTERQTIHYALPKLTGLAQKWYQGLPSLMFSWSEWQN
FT                 KLRSAFPSDENYAQLLSDMLSCKARFGDSLEEYFYEKMVHLNRCNIYGKNA
FT                 IDCILFGIEDRSIRTSAEAAQYSDPDRLLVYLKGVKLNKRVDKTSQQTSMT
FT                 DNKRNKPNRNSMNTTENKSKCYNCGEEGHPYYRCKETIKRCTNCKLVGHLN
FT                 ENCPSKRDSNLKTVLGISQEQDNDLKYFKPIIVNGMNFDCFIDFGSQCSMI
FT                 KESVARILNQKWTSNDLPVLRGFGDGLVNCLGKCDVEVVVDTVKAQVPVLI
FT                 VPNHLLQVPVLLGQTFTEQDHVVVLKTNEILKITTKPEVGPHRLLLRISRE
FT                 TNVNGLTCVEVYSEPCFTGDVLVESSFSHAIGKEYEVIQGLICLMEGRGRL
FT                 MLKGYNPLGVTLKQDTLLARVKPFVGIHSHTVNRILSNDAELPKLLIDSSL
FT                 INVGSDIGDQYQKLLSKLLNEYRDCFAFSTRELGCIKGIEMEIQLHDKTPV
FT                 AYRPYRLAHSERQIVRDMIKDLEDSGIVRPSTSDYASPILLIKRRLAITDS
FT                 A"
FT   CDS           2476..4968
FT                 /product="Gypsy-34_MSe-I_2p"
FT                 /note="reverse transcriptase (partial),
FT                 ribonuclease H, and integrase."
FT                 /translation="KKTGDYRLCIDFRSLNKKTIKEHYPLPRIDDQLDNLS
FT                 GFKYYTTLDLASGYYQIPMAAASKHLTAFITPDGHFEFNRMPFGLANAPSN
FT                 FQRAINSILGNARFKEAFAYMDDVIIPSKTIEEGFNKLRKTLELFRAAGLT
FT                 LKLSKCNFFMKSINYLGFEVTENGVRPGNSKIEAVANFPCPTDQHKVRQFI
FT                 GLASFFRRFIRGFSTIARPLTQLLKKESRWHWGNIEQEAFETLKGELVKRP
FT                 ILAFYNPKHETQVHTDASKIGIAGILMQRPRKESSFNAVAYYSRQTSPEES
FT                 RFTSYDLETLAVVTALKQFRVYLLGLHFTIVTDCSSVRATFEKRDILPRVA
FT                 RWWSSLQEFDFDISHKPGASMSHVDALSRNPVQQDNLTEVRLIDTNWIATA
FT                 QQSDSDLQRIVGILNDKEADNIIEIKNNFVLKRGLLYRKTADGDRWVVPKG
FT                 VRWHLLKANHDSLGHFGFEKTYDKIKRQYWFAKMRRFIKKYVDSCLECAHT
FT                 KTPAGRKSGELHPIPKINRPFHTLHIDHLGPFVRSRKKNSHLLLIIEAFTK
FT                 YLILVPVKSTKSIHTIQAMKNYFHTFGVPQRIISDRGTSFTSRNFKEYLST
FT                 LGIKHVLNAVSTPRANGQVERYNRTVLAALSAKNYDKPENSWDESVSEIQW
FT                 GLNNTVNKGTGKTPAQVLFGLELVGTNDSSLCHTTNSYVDAHVESNVELVR
FT                 NEVSDYVTRNQVKQKESYDKHRKKVSYSVGDLVRIEREVPACGQSRKLVPK
FT                 IRGPYRISEILGNDRYMVIDTPLSRKGNRPFKGVFSVDKIHPWLVFNRNVD
FT                 DECESEDNREANGAVNADIDSSDKECSNN"
XX
SQ   Sequence 5607 BP; 1844 A; 980 C; 1192 G; 1591 T; 0 other;
     gctcagaagt gggatcacac cgaaaataaa aacatttttt tttttctggt gtcgccatac        60
     gcccttagtt ttgaagcagt tttaaacaaa aataatggat gaacaacgtc gtaagcgcgt       120
     tagtcattca aacgttgaaa cagagttgcc aaaacgccag cgggtgactg gcgattcaag       180
     ttgtagggca cataattatg tcggtgcaat gcagagcagc caacagagac gaaactatcg       240
     agaaaatacg tcgtcagatg gcagcaacgt gactccgggt ccaaatataa ttgcaggctg       300
     cagtcgtaac gcgatacaca cgcagcccag ttcgacacat ggtgatcgca tcgtgctaaa       360
     agatcactgt aacgaaactt ctcggcgcaa tcacagttca cgtaatcggc cccgcgtctt       420
     gcgcagccgc aaccgcagcc gcagccgaaa tcgcaggcgc acccgcagct tgagccgcag       480
     ccacagccga agtcgcaggc gtagccgcag ctcgagtcgc agccacagtc acagccgaag       540
     tcgcaggtac agccgcagct tgagccgcag ccgtagcctg agcagcagtc acagcctaag       600
     ccgcaggcgc aaacgaagtc aaagccgcag caaccgacgt agtcgcagat cccgcactgg       660
     tcgtcacaga agaaccagcc gcttacaagg atcccggtta gtagatattt ttaagaatct       720
     tgttcagacc atgaaaatgc aagatggaaa tgaacgtttt ccagttttaa atgtcctgcc       780
     ggaatttgat ccctctaaac gtaatcaaac tattgatatg tggatctcta aggtaaatga       840
     atctgcacag atatataaat ggactgaaag gcagacgatt cattacgcat tgcctaaatt       900
     aaccggttta gctcaaaaat ggtatcaagg acttcctagt ctcatgtttt cctggtctga       960
     atggcaaaat aagctgcgtt cagcatttcc tagcgatgaa aattacgccc aactgttgtc      1020
     tgacatgcta tcgtgcaaag cgcgttttgg agattcgtta gaagaatatt tttacgaaaa      1080
     aatggttcat ttgaatagat gtaatattta tgggaaaaat gcaatagatt gtatcctctt      1140
     tggtattgaa gatcgttcta taaggaccag tgctgaagca gcacagtatt cagatcctga      1200
     tagattattg gtttatttaa agggcgttaa attgaataag cgtgtagaca aaacttcgca      1260
     gcagactagt atgactgaca ataagcgtaa taaacctaat agaaattcga tgaatacaac      1320
     ggaaaacaaa tctaaatgtt ataattgcgg ggaagaagga catccgtatt atagatgtaa      1380
     agaaactatc aaacgttgca ccaactgcaa actggtaggg catttaaatg agaattgtcc      1440
     tagtaaaaga gatagtaact taaaaacagt attagggatc tcccaagaac aagataatga      1500
     tcttaaatat tttaagccta taattgttaa tggcatgaac tttgactgct tcattgattt      1560
     tgggagccaa tgttctatga ttaaagaatc tgttgcacga atattaaatc agaaatggac      1620
     atctaatgat ttacctgtac taaggggatt cggtgacgga ctcgtgaact gtttaggcaa      1680
     atgtgatgta gaagttgttg tagacactgt aaaagcacaa gtgccagtcc ttatagtccc      1740
     gaaccatttg ttacaagtcc cggtattatt gggtcaaaca ttcactgaac aagatcatgt      1800
     agtggttctc aaaactaatg aaattttaaa gattactact aagccggaag tgggacccca      1860
     taggttattg ttacgaattt caagggagac aaatgtaaat ggacttactt gtgttgaagt      1920
     atattctgaa ccatgtttca ctggtgacgt tcttgtagag tcgagcttta gtcatgcgat      1980
     aggtaaagaa tacgaagtta ttcagggttt aatatgtttg atggaaggcc gtggtcgatt      2040
     aatgctgaag ggatataatc cattaggggt aactttaaaa caggatacat tattagcgcg      2100
     cgtaaaacct tttgtaggaa tacattcgca tactgtgaat agaattttga gtaacgatgc      2160
     agaattgcca aagttactta ttgatagttc gttaataaat gtaggttctg atataggaga      2220
     tcaatatcaa aagttattat caaagttact gaatgaatat cgggattgtt tcgctttttc      2280
     gactcgagag ttgggatgca taaaaggaat tgaaatggaa attcaactgc acgataaaac      2340
     ccctgtagca tatcgacctt atcgactggc tcattcagaa cgtcaaatag tccgcgatat      2400
     gattaaagat ttagaggatt ccgggatagt tcgcccttcg acgtcagatt atgcatctcc      2460
     aatcttattg attaaaagaa gactggcgat tacagactct gcatagattt taggtctttg      2520
     aataagaaaa caattaaaga acattaccca ttacctagaa tcgatgatca attagataat      2580
     ttgtcgggat tcaagtatta cactacccta gatcttgcca gtggatatta ccaaattcct      2640
     atggcagctg cttccaaaca tttaactgct tttataacgc ctgatgggca tttcgaattt      2700
     aatcgtatgc cctttggtct agctaatgca ccatcaaatt tccaaagagc tattaatagt      2760
     attctcggta atgctcgatt taaagaggct tttgcataca tggatgacgt aattattcca      2820
     tccaaaacta ttgaggaagg attcaataaa ttacgtaaga cattggaatt atttcgagca      2880
     gctggactca ccttaaaatt atctaaatgc aattttttta tgaaatccat taactaccta      2940
     gggttcgaag taactgagaa tggagttcgg cctggaaata gtaaaataga agcagttgca      3000
     aattttccct gccccactga ccagcacaaa gttcgtcaat ttattggtct agctagtttt      3060
     tttcggcgtt tcattagagg tttttctaca atcgctagac cattgactca acttttaaaa      3120
     aaggaatcga ggtggcattg gggtaatata gaacaagaag cgtttgaaac tttaaaaggg      3180
     gagctagtta aacgtcccat tttagctttt tataacccaa aacatgaaac tcaagttcat      3240
     acggatgctt ctaaaatagg gattgctgga attctgatgc aacgacctcg taaagaatct      3300
     tcttttaatg ctgtagcata ctatagtaga cagacatccc ctgaagaatc tcgttttact      3360
     tcgtatgatt tggagactct cgcggtcgta acagcattaa aacagtttcg agtgtattta      3420
     ctgggacttc actttacaat agttaccgat tgcagttcgg tcagggctac ctttgagaaa      3480
     agggatatat tgccaagagt tgcgcgatgg tggagtagtt tacaagaatt tgattttgac      3540
     atatcacata aaccgggtgc tagtatgagt catgtagatg ctctcagtcg taatcccgtg      3600
     cagcaggaca atttaacaga agtaagatta attgacacaa attggatagc tactgctcaa      3660
     caaagcgact ctgatcttca aagaattgtt ggcatattaa acgacaaaga agctgataat      3720
     ataatagaga ttaaaaacaa ttttgtatta aaacgtgggc tgctgtacag gaaaaccgct      3780
     gacggcgatc gctgggtagt gccaaaagga gtaaggtggc atttacttaa ggctaatcat      3840
     gactcattgg gacattttgg ttttgaaaag acttatgaca aaattaaacg tcaatactgg      3900
     ttcgctaaaa tgagacgttt cattaagaaa tatgtagatt cttgtctaga gtgtgctcat      3960
     accaaaactc cagccggtag gaagtccggt gaattgcacc ctatacctaa aattaatcga      4020
     ccgttccata ctttgcacat tgaccattta gggccatttg tgcgaagtag aaagaaaaat      4080
     tctcatttat tgttaattat tgaagcattt acaaaatatt taattttagt accagttaaa      4140
     agtactaaaa gcattcatac tattcaagct atgaaaaatt attttcatac tttcggtgta      4200
     ccacaaagaa taatatctga tagggggaca tcctttacat cacgaaactt taaagagtat      4260
     ctaagtactt taggaattaa acacgtctta aatgcagtct ccacaccacg tgccaacggg      4320
     caagtagaaa gatataatag aaccgttctg gcagctctca gcgctaaaaa ttatgataaa      4380
     cccgaaaatt catgggacga gtcagtgtct gaaatccaat gggggttaaa taatacggtt      4440
     aataaaggaa cgggcaaaac acctgcccaa gtattattcg gtcttgagtt agttggcact      4500
     aatgactcgt cgttatgtca taccacaaat agttatgttg atgcacatgt tgaaagcaat      4560
     gtagagttag tgcgtaatga agtatcggat tacgttacta gaaatcaagt taaacaaaag      4620
     gaatcctatg ataaacatag gaagaaagta agctattctg taggtgatct ggtgaggatc      4680
     gaacgagagg tgcctgcttg tggtcaaagt aggaaattgg ttcccaaaat tcgcggtcct      4740
     tatcgcatta gcgaaattct tggcaatgac agatacatgg tcatagacac gcctctttct      4800
     cgaaaaggta atagaccctt taaaggtgtc ttctcagtag ataaaataca cccgtggtta      4860
     gtatttaatc gaaatgttga cgatgagtgc gaatctgagg acaatcgaga agctaatgga      4920
     gcagtcaacg ctgatattga cagtagtgac aaggaatgta gtaataatta aataatcaaa      4980
     caacaatatt taatacatta tgttttacat cagtaaagta tttgagcaat actgtaaaca      5040
     tgtaggggtt acagtattga tgttaggtgt tactgtagat atgaagaggc tacagtaaca      5100
     cagataaaca agtaattatt atttatttga ggcgaagaca tgaaggggct tcgtcctcgc      5160
     attacaggtt tagcaaagca tttagcaata ctgtaaacat gaaggggtta cagtattgat      5220
     gttaggtgtt actgtagata tgaagaggct acagtaacgc agataaacaa attattattg      5280
     aggcgaagac atgaaggggc ttcgtcctca ggtttagcaa agtattttag caatactgta      5340
     aacatgaagg ggttacagta ttgatgttag gtattactgt cgatatgaag aaactgcagt      5400
     gactcagata aacaactaat tataattaat aatgtgaggt gaagatatta tgggacattg      5460
     tccatattga ttgtcagtta ttaatgattt atattgtaag taataatata tattgaaaag      5520
     ttgatcgaat tattatgaac gtattgattt tatatgatat cccctttgcg attttcacgg      5580
     gacgtgaaat aagcaggaaa ggccgac                                          5607
//
ID   Gypsy-34_MSe-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-311
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 960-960 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 311 BP; 98 A; 43 C; 57 G; 113 T; 0 other;
     tgttagaaat tgtaacaatt atattatcct ttgttttgtc tttaatttgt taataaatga        60
     tttgttattg atgtaaagca tgttcccacc agctacatcc ggtagtcact ttattaatat       120
     tgacttccgg tataaccgat gtctgtcggt agacagagat gattttattg atagcagtcg       180
     ggaacatggc attcgagtct gagctctctt gaagcaaaga cgtcttgtat aatatcgtta       240
     aataaaagtg ttgtgaagta caagtgaagt attacttaaa taagaagcta tttaattaca       300
     tcgtattaac a                                                            311
//
ID   Gypsy-34_NVi-I repbase;    DNA;    INV; 12855 BP.
XX
AC   .
XX
DT   29-JUN-2009 (Rel. 14.07, Created)
DT   29-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposon from Nasonia vitripennis, interanl
DE   region, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-12855
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1387-1387 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(10353..11144,11113..12003)
FT                 /product="Gypsy-34_NVi-I_2p"
FT                 /translation="MLEKHTALVAHACGPHCEIGELQQAVKEAVRQAGRVL
FT                 DLLLVHNIGDEPRRARRSLLPFIGTIHKFLFGTLTEADEAEIQEAVRAIAN
FT                 DTKITAALLANQTEIIDRALSNLDTKLTRLEATTAILINKSITSDNEIAIR
FT                 SAVQTVKDNLLQFKMDTEVLTDAILFATQGMVHPRIMPPETLLYAAKTAAN
FT                 TVANAKFPSPDGNFSAIPILKISKVTVLLANSHLVYQIAIPLLDIQKFNLF
FT                 KASPLPSVQRALNISNIAAYIWPIFQISRPIFGPEFHFFAVSESNRSYMPI
FT                 PPERIHKLRKLGDLLIAVNPEPIREIRSNVACEIKIASGHALGKAEHCDIR
FT                 IKQLRDTVWLRLHKTNAWIFSVSNAENIYIQCQRAEQITSEISGTGVLELR
FT                 PGCSAHTANAHLAASRSLTSYANASVFDIVVFNVSAMLTEIGSIEGKAIEL
FT                 QQAIEIEAKNRAENSHGVKFETLETGTALRDITTKAREIADRKEKSFELEN
FT                 LSSFTSKFSYSSWTAVIIIIVIISGVWIIKKRRAGQPMRKLIKQQEKQLEL
FT                 QTLREMNRARSRD*"
FT   CDS           join(840..3575,3536..4879,4852..7575,7542..9245)
FT                 /product="Gypsy-34_NVi-I_1p"
FT                 /translation="YLGVPSNLTIKESTRGIKISLPVSYIPGPSYTHTVVN
FT                 RQLSKTVMAPTGILGAARGVLGLGARKKQLDTGAKSEPEWDSEQMRYARNV
FT                 YRNTQKMTPRTRRVVRKHISKDCLLSSDSENEPRDARMAVNWIEARKNLLD
FT                 EHSRPPKSYELPKQSDDSGEKLIVLDDENQARNEADASAEAPESNVADPSN
FT                 TDANAELAGAAAANRENAVRVVDVAGVQEKFGRLNLRTNICDKMEVPLAAK
FT                 ERLAINEKCVSGVSSLFEIKNIALGNGLSQILPKTGIDDRPWAGRSQTSIG
FT                 PGHRSYGGNSQNTAQRKIAPIEIPAAQRPVCKFELSREELEVILRMREDRL
FT                 LKESRINPKPIIDQFSSDESESEHRSVHKAVVHKTQLENKTTRPRLPRNRD
FT                 AGRLNAVVNQVTNPFSEGEPRETARRHHYGENYNRDEFSPDERRPMSRTGN
FT                 ERAGRTSALNKYSSRYDDSRDRGRAYPSDSDSDEDPRDRRHPQRRAPDRDR
FT                 EPPRRGPNRRNHRNPAGFWPSGNDPEDDPSEPSDDNIVAINNGNPRRDVRP
FT                 RGGMPFHQAVNFIPQFGGDPDDLNQFCNSVRKVLYSFGREYEDYLLMYIAN
FT                 KLKGKAADGYRARTTSYLSVEQLLNDLTLQYGNIGIADEVQAQIKVLKQKS
FT                 GEAVGDYGLRMQRLHNRLLTIIESAPDLSSFDRKARRRYADDDALQQFTFG
FT                 LVSPLDHQVRSERPRTLNEAIKIALEFEGKQSARRIMYGDIEASIPAMLAL
FT                 PAPARVRRAVAEEAKPPDNQAVETNANNQQSKYCNYCDMKNHALKDCGVLI
FT                 KHAQKNIIMNPNRKNFDNNSNNNGNNSGNNSNNNGNNNNNNNTNGGQRNYR
FT                 KNNRYNKNNHSNNNNNNNSNNNNGNNGNNNSNNNNDSSNNHGVNGNANGAG
FT                 DSNSQNLNRERRRRQQFPEFKLDGRSPRSSSVERRYIEPESKQKTESANIR
FT                 FLTAGRQPPIVNIECPQLINKKGKFYADSGADISIVKIGKLAPGYPIDTHK
FT                 IIKVQGVTPGTAHTLGQAVIQLQGLECDVQVVPNDFPIENAGIIGWDTIDR
FT                 HKGCVDAANKRLKFGDVSVPFETDERITVPPRVKMVISARVRDSSVKIGWV
FT                 PLMDLHPNLLFGNFVAENRNGRIFAECINIGDTEVSVASPIVDLQECETIA
FT                 AHPLYQADGDGSPDRVAEFSASLRRMFDANKLEQKYREVNTLNEKMRANNK
FT                 ARLERVEKISQLADLEGCNAEEVEYIREIIDEYSGVFGLEGEPLPATHLLQ
FT                 HKIILKSNKPVKCQRFRFPPALKEHMIRELQKLREQDIVVPSNSDYSSMLW
FT                 IVPKKPDANGNRKFRLVTDFRAINEISEGSCHPLPFTSDILALHPPTIYSC
FT                 LASANYITVMDLKQGYHQIEMHPDSAHLTAFYAPDGRHGNQLLQFNRMAMG
FT                 LKEATITFTRAMSLAMAGLQGDEVEIYLDDLMIFSETLDEHRVRLRRVLKR
FT                 LLDANMTVEPRKCQFLKREAHVLGHIVGGGFIKTDPQKIRAMAEYAVPTNP
FT                 KKLKQALGLFSYYRRFIENFSKVAYPLFKLLKKDTKFVWGAEEQAAFDELK
FT                 MLMCKEPVLKTPDLEQPFIVTTDASDFALGAILSQGKLGKDQPCAYASRCL
FT                 KGSELKYPTYDKELLAIVFAKEQFRHYLYGRKFTIVTDHEALKHFHTSKKP
FT                 DLRFNRLKAALVGYDFDIIYRPGNKNANADALSRNPMLKPGETNPELPRLE
FT                 LYELAEKQIEADPDEEAGAPPGRIFRARAIKQLGVNKNQKAKQAISDSDES
FT                 RKTSEIKKKCNDAALIYKAGETLAVRNEFEDFYLCRALHDIYHGDDLIKIQ
FT                 WFTEIENCKFTYALDYHDSTRFGCILTNTSLKKAGKNRYTLSKTERERIRK
FT                 ILAESIKFRASPRIVQSSTAAMDIGKEPDSDATMSTVQSVVSNSSSCGVIL
FT                 PPGAKEYLNYVAPLSVVTRKAKASQSQISRKPYSPSNTSSSDESDVIQASG
FT                 TALEIEPLQSFKFPAKPVIVDEASIRSKTSSPESPRRMHAGNPDQREASVT
FT                 HTPRVDANKVTAPRNEHAPRPHGTPVKTRTPEIWQVCNGKFQKKLVMNIEE
FT                 KEIKGRDGMQINIYEAEPSVASEKGKTNDSSVIETPEIPNDNARASNALEK
FT                 SKTPRARKTSAAAGMEGQISRNGDPQTREKTPEPGSGTKALAHQSADESEF
FT                 GDVGPFEDFAGIPRNYDRKPDPSAENSSISSGNVLMRTYIRKKRCAEPYVE
FT                 LVRSDDIPSSPPGNCLFFSLIKAAKLNISAIDLRKHLQYLGNRPKETFAIN
FT                 SCGEPSETARILKSKNEYGTVDCAYLFAQEFNFNICIHYDLPNKHRILCHV
FT                 LSSEAKEFLHLNLTGQHFTPYIRVNVPPPTTKPTKRQRDPSPTSDGSHSSA
FT                 KSLVFGKKKAEKRKQRFKPDSSKQEARKGRDRRGAESAMSVGSNIIIATCT
FT                 SPDPSAQPTQAANESPNISNVSLVLNPATSIASPPRTRISSFDNSEKSCAD
FT                 APPHNQSHPNFPESPPQINSGDNCEDAPILASPNLRASTSAAKRIRDAGNS
FT                 IGTSDDEKTAAAVTAALSHEKMKRYVVAGARPPREKPPWAIPEGQEPQPFV
FT                 HLQSLSEHPFRYKENLVYLTSSDNYLSTEVQEALVERGYVNPEDLENKKFG
FT                 IGEINVIDCKGFSVIGVYIKAHFDDRPLRVDLIKCLRNLKNVMIARGLNSV
FT                 ALIRDLEMLTPVEWTKLIELFDDTFMNKRVAAILYKNNLPVPPVNERFKLI
FT                 QEYHIAAMGGHRGMTKTYSKIANDFYWRNMRPDIKQFVARCATCQSNKLVR
FT                 VKTRLPMLISNTPSTPFTQIALDFYGPLENSRRGKSTSYPSKTC*"
XX
SQ   Sequence 12855 BP; 4127 A; 3277 C; 2962 G; 2488 T; 1 other;
     ttttggcatc ccttgtggcg cgaggattcg cagcagaaga gacaactgca tcataaatta        60
     tctgcagtca cgagaaatcc agatcgatag aaggaaatta atcctcgtaa gaagaaaagt       120
     tcgtcacaga acacaccgtg ccgcataaaa agcacaataa taaaataaag aagtagtagt       180
     gaggagctct agcagtcgcc gaggctcgtg taaatcaaag cacgagctca aagaaatttt       240
     tttttgtctc acgggagccg ctcgagcaat cagctcaaaa atcgccttaa agaagtgagc       300
     ggcaatccaa caccaggcaa ccgccggcga gcgttgccaa aatcctcaaa gtccatctgg       360
     accacctaag cccacctggg ccaacgaata aagctgcaca accatcggcg cggaccagcc       420
     tccacgcgca gcacagtgtc gacgcggacc agccgtcgat acgcgcgact acaaaacctc       480
     cagcccagcc agcagccacc ggttccacat cagtcatcat cagtcatcag ctacaggaat       540
     accatgcgag ccgtctacgc agcgctattc atcgcaatgt aagtcgtttt ttttactaga       600
     cgcaatttgg cttgttcgcg tgctttcgta ctataatacc tcggaggccg tccaacttgt       660
     aaaagagtca acgcgcggaa taaagattag tcttcccgtc tttacattcc ctcctataca       720
     accaaccatc agcttcggaa ataccatgcg agccgtctac gcagcgctac tcatcgcaat       780
     gtaagtcgtt tttttactag acgcaatttg gcttgttcgc gtgccctttc gtactataat       840
     acctcggagt gccgtccaac ttgacaataa aagagtcaac gcgcggaata aagattagtc       900
     ttcccgtctc ttacattcct gggccctcct atacacacac agtagtcaat agacaattgt       960
     caaaaacagt catggctcct acggggatac tcggcgcggc gcggggcgta ctcgggctag      1020
     gcgcgagaaa gaaacagcta gataccggag cgaaaagcga accagaatgg gatagcgaac      1080
     aaatgcgata cgcgcggaac gtatatagaa acacccaaaa gatgactccg cgcacgcgta      1140
     gggtagtgcg aaagcatatc agtaaagatt gtttactatc aagcgattcc gaaaatgagc      1200
     ctcgggacgc gagaatggcg gtcaactgga tcgaggcgcg aaagaaccta ttagacgaac      1260
     acagccgacc gccaaaatca tacgaactgc ctaaacaatc cgacgatagc ggggaaaagc      1320
     taatcgtatt agacgacgag aaccaagccc ggaacgaagc ggacgcgagc gcagaggccc      1380
     ccgaatcaaa cgtagcagac cctagtaaca ccgacgcgaa cgcagaactt gcaggagctg      1440
     cagccgcgaa tcgggaaaat gcagtaagag tagtagacgt agcgggagta caagaaaaat      1500
     tcggtcggct aaatttaaga actaacattt gcgataagat ggaggtccca ctcgcggcaa      1560
     aggaacggct cgcaatcaac gaaaaatgcg tgtccggcgt atcaagtctt ttcgaaataa      1620
     aaaatatcgc gcttggcaat ggtctaagcc aaatcctgcc gaaaaccggg atagacgata      1680
     ggccttgggc aggtagatct caaaccagca tcggccccgg gcatagaagc tacggcggca      1740
     actcgcaaaa tacagctcaa agaaaaatcg cacctatcga aattcccgca gctcagcgac      1800
     ccgtgtgcaa gttcgaactg tcccgggaag aactcgaagt aatattgaga atgcgcgaag      1860
     accggctact caaagaaagt cgcataaatc cgaagccaat catagaccaa ttttccagtg      1920
     atgaaagcga gagcgagcac cggagcgtac acaaggcggt agtacataaa acgcaacttg      1980
     aaaataaaac caccagaccc cgtctcccca gaaacagaga cgccgggcgt cttaatgctg      2040
     tagtcaacca ggtgaccaac ccgtttagcg agggcgaacc ccgggaaacc gcgcggcgtc      2100
     atcactacgg cgaaaattat aaccgcgacg agttcagccc cgacgagcgt cggccaatga      2160
     gtcgaaccgg aaacgaaaga gcaggaagga ccagtgcatt aaataaatac tcatcgagat      2220
     acgatgatag ccgagaccgc ggcagagcct acccgtcgga cagcgattca gacgaggatc      2280
     cgcgcgatcg cagacacccg caaaggcgtg caccggaccg cgatcgcgag ccaccgcgtc      2340
     gaggaccgaa ccgccgaaat caccgaaatc ctgccgggtt ctggccatca ggcaacgatc      2400
     cagaggatga tccaagcgag ccgagcgacg acaatatcgt agcgatcaat aatggcaatc      2460
     ccaggcgcga cgttcgcccc aggggcggca tgcccttcca tcaggcggta aatttcatcc      2520
     cgcaattcgg cggcgacccc gacgatttaa atcaattttg caattccgtc agaaaagttt      2580
     tatattcctt cggcagagag tacgaagact acctgctaat gtacatcgcg aacaagttga      2640
     aaggcaaagc cgccgacgga taccgcgctc gtacaacaag ttatctatcg gtcgaacaac      2700
     tgttaaatga tctaacgttg caatacggaa atatcggcat cgcagacgag gtacaagcgc      2760
     aaataaaagt tttaaaacaa aaatcaggcg aagccgtcgg agattacggt ctgcggatgc      2820
     aaagactgca caacagactg ctcacgatta tcgaatcggc cccagacctg tcgtcgttcg      2880
     acaggaaagc gagaagacgt tatgcagatg acgacgcgct gcagcaattt acgttcggtc      2940
     tcgtatcacc tctcgatcat caagttcgga gtgagcgtcc acgcaccctc aacgaagcaa      3000
     ttaagatagc attagaattt gagggaaagc agagcgcgcg acgtataatg tacggcgata      3060
     ttgaagcctc tatcccagca atgctcgctc tgcctgcccc agcgcgggta cgtagggccg      3120
     tagcagaaga agctaaacca ccggacaatc aggcagtcga gacgaacgcg aataatcagc      3180
     aaagtaaata ttgtaattac tgcgatatga aaaatcacgc acttaaagat tgcggtgtcc      3240
     taataaaaca cgcgcagaaa aacataataa tgaacccaaa cagaaagaac ttcgacaata      3300
     actcgaacaa taacgggaac aactccggca ataattcaaa caataacgga aataacaata      3360
     acaataacaa cacgaatgga ggacaacgca actaccgcaa aaataatcgt tataacaaaa      3420
     ataaccacag taataacaac aataacaaca atagcaacaa caacaatggt aacaacggca      3480
     ataataacag taataacaat aacgatagtt caaataacca cggcgttaac ggtaacgcga      3540
     acggcgcagg agacagcaat tcccagaatt taaactagat gggcgctcgc cgcgctcctc      3600
     aagcgtcgag cgtcgataca tagagccgga atccaagcaa aaaaccgagt cagcaaatat      3660
     aagattcctg actgctggcc ggcaaccccc aatagtaaat atagaatgcc ctcaattaat      3720
     aaacaagaag ggtaaatttt acgcagattc gggagcagac atatccatag ttaaaatcgg      3780
     gaaattagca cccggttatc caattgacac gcacaaaata ataaaagtgc agggagtaac      3840
     ccccggcaca gcgcacacgc tcgggcaagc ggtaatacaa ctgcagggcc tcgaatgcga      3900
     tgtccaagtc gtaccaaacg atttcccgat agaaaacgcg ggcataatcg gctgggacac      3960
     gatcgacaga cacaaaggtt gcgtcgatgc ggcaaacaaa cgcctgaaat tcggcgacgt      4020
     atcggtgcca ttcgagaccg acgagcgcat taccgtacca ccacgggtaa aaatggtaat      4080
     tagcgcacgt gtgcgagata gtagcgtgaa aataggatgg gtcccactaa tggacctcca      4140
     ccctaacctg ctcttcggga attttgtcgc ggaaaatcga aacgggcgca tattcgcaga      4200
     atgcataaac attggggata cggaagtatc ggttgccagc ccgatagtgg atttacaaga      4260
     atgcgaaaca atcgcagcac atccactata tcaagccgat ggggacggct cacctgaccg      4320
     ggttgcagaa ttttcggcaa gtctaagacg catgttcgac gcgaataaat tagaacaaaa      4380
     atatagagaa gtcaatacat taaacgaaaa aatgcgcgca aacaataagg ccaggctcga      4440
     acgagtcgaa aagatttcac aattggccga tttggaggga tgtaacgcgg aagaagttga      4500
     atatattcgc gaaataatcg acgaatactc gggcgtattt ggtctcgaag gagaaccgct      4560
     accggctaca caccttctac agcataaaat catattaaag tcaaacaaac cggtaaaatg      4620
     ccaacgcttt agattcccgc ccgcgctcaa agaacacatg atccgcgagt tgcagaagct      4680
     tcgcgaacaa gatatcgtcg tgccttcaaa ttcggactat tcctcaatgc tttggattgt      4740
     cccaaaaaag ccggacgcga acggtaaccg aaaattcagg ctagtaaccg acttccgggc      4800
     gataaacgaa atttcagagg gaagctgcca tcccttaccc tttactagtg atattcttgc      4860
     cttgcatccg ccaactatat aacggtgatg gacctaaaac aaggctatca ccagatagaa      4920
     atgcatcccg attccgcgca tttaaccgca ttctacgcgc cggacggcag acacgggaat      4980
     caattattac agtttaatag aatggctatg gggctgaagg aagccaccat aacgttcaca      5040
     cgcgctatgt ctctggcaat ggccggactc caaggagacg aggtcgaaat atacctagat      5100
     gatcttatga tattcagcga gactctcgac gaacatagag tacgtctccg ccgggtattg      5160
     aaaagattac tagacgccaa catgacggtg gagccgagga agtgccagtt tctaaagaga      5220
     gaggcgcatg tactcggcca catcgtaggc ggaggcttca ttaaaaccga tccccagaaa      5280
     ataagggcaa tggcggaata cgcggtacct actaacccca aaaagctcaa gcaggcccta      5340
     ggcctgttca gctactatag gaggtttata gagaacttct cgaaagtggc atatccgctg      5400
     ttcaagctcc taaagaaaga cacgaaattt gtatggggag cagaagagca agccgcgttc      5460
     gacgaattaa aaatgttaat gtgcaaggaa ccggtcctaa agacgccaga tctcgagcaa      5520
     ccctttatcg taacaaccga cgcgagcgac tttgccctag gcgccatcct aagccaggga      5580
     aagttgggaa aagaccagcc atgcgcgtac gcttctcgct gtcttaaggg cagtgaatta      5640
     aaatatccta cttacgataa agagttactc gcgatcgtgt ttgccaaaga gcaatttcgg      5700
     cattacttat acggccgaaa attcacgata gtcacggacc acgaggcgct caaacacttc      5760
     cacacatcga aaaaaccaga cctaagattt aaccgtctaa aagcggctct tgtcggatat      5820
     gatttcgaca taatataccg cccgggcaac aaaaacgcga acgccgacgc gctttcgcgc      5880
     aatccaatgc tcaaaccggg tgaaacaaat cccgaattac cacgactaga attatacgaa      5940
     ttagcagaaa aacaaatcga agcggacccg gacgaggaag ccggcgcacc gccgggtaga      6000
     attttccgcg cgcgagcgat caaacagcta ggcgtgaata aaaatcaaaa agcgaaacaa      6060
     gcgatatcgg actccgatga gtcaaggaaa acaagcgaaa taaagaaaaa atgcaacgac      6120
     gccgcgctga tttacaaagc cggagaaacg ttagccgtaa gaaacgaatt tgaagacttt      6180
     tacttatgcc gcgcgcttca cgacatttac cacggcgacg atttgatcaa aattcaatgg      6240
     tttaccgaaa ttgaaaactg taaattcaca tacgcgttgg actatcatga ttccacgaga      6300
     ttcggatgca ttttaactaa tacttcgtta aagaaagctg gtaaaaatag atatacattg      6360
     tcgaaaaccg agcgcgagcg cataaggaaa atactcgcag aatcaatcaa attcagggcg      6420
     tcgccgcgaa tcgtgcaatc atcaacggcc gcaatggaca tcggaaaaga gccagactcc      6480
     gatgcaacta tgagtacagt gcaatcggtc gtttcaaaca gctcgagctg cggagtaatt      6540
     ctaccccctg gggcaaaaga atatttaaat tacgtagcgc cactgagcgt cgtgacgcgc      6600
     aaggcaaaag ccagccaaag ccaaatatcg cgcaagccct attcgcccag caacacgagc      6660
     agcagtgacg aaagcgacgt aatacaagca tcaggaaccg cgctagaaat agagccactc      6720
     caatcattta aattccccgc taaacccgtg atcgttgacg aggcatcaat acggagcaag      6780
     acaagctcgc ccgaatctcc tcgacgtatg cacgcgggaa atccggacca acgcgaggcg      6840
     agcgtaacgc acacgcccag agtcgacgct aataaagtca cggcgccgcg caacgaacac      6900
     gcgccgcgtc cacacggcac tccggtcaaa acccgtactc cagaaatatg gcaagtatgc      6960
     aacggtaaat tccaaaagaa actcgtcatg aatatcgaag aaaaggagat caagggtagg      7020
     gacgggatgc aaattaatat atacgaggca gaaccatccg tagcgtccga aaaaggaaaa      7080
     acaaacgaca gctcggtaat tgaaacgccg gaaatcccga acgacaacgc gcgagcgtcg      7140
     aatgctttag aaaaaagcaa aacgccgcgc gcgcgaaaaa cgagcgcagc tgccggaatg      7200
     gaaggtcaga tttcgagaaa cggagatcca cagacgcgag agaagacacc cgaaccagga      7260
     agcggaacga aggcgctcgc gcatcagagc gctgatgagt cagaattcgg agacgtcggc      7320
     ccattcgagg atttcgcggg cataccacga aattacgatc gtaaacccga tccatccgcc      7380
     gaaaactcgt cgattagctc gggaaacgtg cttatgcgta catatatacg gaaaaagcgt      7440
     tgcgccgaac cgtacgtaga gctggtacgc tcggatgata taccaagctc gccgccaggg      7500
     aactgcctgt tcttttcgct gatcaaagca gcgaagctta atatctcggc aatagaccta      7560
     aggaaacatt tgcaataaat tcctgtggtg aaccttccga aaccgcgagg atacttaaat      7620
     ccaaaaatga atacggcact gtcgattgcg cctacctgtt cgcgcaagaa tttaatttta      7680
     atatatgcat tcattatgat ctaccaaaca aacaccgtat actctgtcac gtgttgtcga      7740
     gcgaagcaaa agaattttta caccttaatt tgacgggtca gcatttcacg ccgtacatcc      7800
     gcgtaaacgt tccgccgcca accacgaagc ccacgaagcg acagcgcgat ccatcgccca      7860
     ctagtgacgg cagccattcg agcgcaaagt cgctggtatt cggaaagaaa aaagcggaaa      7920
     aacggaaaca gcgctttaag ccggattcat cgaaacaaga ggcccgcaag ggacgcgaca      7980
     ggagaggcgc cgaatcggcc atgagcgttg ggagcaacat tataatcgcg acatgcacga      8040
     gcccagaccc ttctgcccag ccaactcaag ctgcgaacga atctccaaac ataagcaacg      8100
     tgtcgctagt cctcaaccca gccacatcta tcgcctcacc accgagaact agaatttcga      8160
     gcttcgataa ttccgaaaaa tcatgcgcag acgcccctcc gcacaaccaa agccacccaa      8220
     actttccaga aagcccgcca cagataaact cgggggacaa ctgcgaggac gcgcctatac      8280
     ttgcaagccc gaacttgaga gcaagcacgt ccgcggcgaa gcgtattaga gacgcgggca      8340
     atagcatcgg cacaagcgat gacgaaaaaa cagccgccgc tgtaacygca gcgttatcgc      8400
     acgaaaaaat gaaacggtac gtcgtggccg gggccaggcc tccacgcgag aaaccacctt      8460
     gggctattcc cgagggccaa gaaccccagc ccttcgttca cttgcaatcc ttgagcgagc      8520
     accccttccg gtataaagaa aatttagttt acctaacctc atccgacaat tatttatcga      8580
     cggaagtaca ggaggcgctc gtcgaacgag gctatgttaa cccggaagac ttagaaaaca      8640
     aaaagttcgg aatcggcgag ataaacgtga tcgactgcaa aggatttagc gtaatcgggg      8700
     tttatatcaa agcgcacttc gacgatcgtc ccctacgcgt agatctgata aaatgcttgc      8760
     gaaacctaaa gaacgtcatg atagctaggg gcttgaacag cgtagcgtta atccgagacc      8820
     tcgagatgct gacaccggtc gaatggacaa aattaataga attatttgac gacacattca      8880
     tgaacaagcg tgttgccgcg atactttaca aaaataacct gccggtaccc ccggttaatg      8940
     agcgctttaa attaatccaa gaataccata tagcggcgat gggtggacac cgtggaatga      9000
     cgaagacgta cagcaagatc gcgaacgatt tttactggcg caatatgcgc ccagacatta      9060
     agcaattcgt cgctcgatgc gccacctgtc aaagcaataa gcttgtccgc gtaaaaactc      9120
     gcttgccaat gctgatcagc aacacgccat cgaccccatt cacgcagata gcgttagatt      9180
     tttatgggcc cttggagaat tcgaggcgcg gaaaaagtac atcttatcca tccaagacat      9240
     gttgacaaag tacataattt taatccctac aaagcatgca agcgccgacg aagtggcgcg      9300
     agccctaacc gaaaaggtca tttgcgtatt cgggccacca gccgctatcg taacggacca      9360
     gggctcacac ttccagaatc gggtactgga aaagctcgcg aaaatttttc aaataaaaaa      9420
     gttctgcacc acagcttacc acccgcaatc gaatgggtca atagagcgca tgcatcacac      9480
     gctcacggag tacttacgca aatacgtgaa agacactacg cgatgggacg agtggacagc      9540
     gatttgccaa catgcataca actgcacgga gcacgagagt acccgttact cgcctcacga      9600
     gctgcttttt ggtacaaagc ctcgcactcc gtccagcttc acgccaagca tcgacgacgt      9660
     tacgtacaac caatacatag acgaaatgac aactaattta acggcgctac agacgaccgc      9720
     ggccatgaat ctggtccagt cgaaataccg gtcgaaatac tactacgatc ggaaacttaa      9780
     cacaaaacac ttccgggagg gcgaaaccgt cttcctacta aaagaaccca aaaagggaaa      9840
     gcttgaagcg atcgagtacc tcggtccgtt cgaaatcacc gacattaaca gaaaaacgca      9900
     caacgtgaca atacgcaacg acgacattac caagaccgta cacataaaca aattaaagcg      9960
     gccgagtgaa ctagccaggc agatgaacgc gtcggaagaa gagtaggagt aggacgtttt     10020
     ttttctgttt ttttttcgcg gcaccggacg tgccgctcaa aaaaaaaacg taacatgtat     10080
     accccagaga gattagtctc cggcgtcttg ctacaagcac cagcgggcta ctggcaataa     10140
     tcactaacgc caactaatat tttagggtag ccgcgggaag ccgccaggag aacctcaacg     10200
     cgatccctga ccccggatcg gccccattca ttcgcctatt ggaagaaaac gtaggcctaa     10260
     tcaccgagaa aatttcaccg ctcgccacgt ccagcacaga ctggaaaata atccagaaag     10320
     tggacctacg gccgtacttc aaagcgagcg aaatgctaga gaagcatact gcgttggtgg     10380
     cgcacgcatg cggcccgcac tgcgaaatcg gggagctgca gcaagcggtt aaagaagccg     10440
     tacgccaggc gggaagggtg ctagatttgt tgctcgtaca taacatcggg gatgaaccac     10500
     gccgcgcacg aagatcgcta ctcccattta tcgggacaat acacaaattc ctgtttggca     10560
     cgctaacaga agccgacgaa gcagaaatcc aagaggccgt aagagccata gcaaatgata     10620
     ccaaaatcac tgcggcgctg ttggcaaacc aaacagaaat tatcgatcgc gccttatcca     10680
     acctggatac aaagttgaca aggctagaag ctacaacagc catcctaata aacaaatcaa     10740
     tcacatcgga caacgagatc gcgatacgca gtgcggtaca aactgtaaag gacaacctac     10800
     tgcagtttaa aatggacacg gaagtcctga cagatgcaat tctcttcgcg acacagggca     10860
     tggttcatcc gcgaattatg ccaccagaaa cgctattata cgcggcgaaa acagcagcca     10920
     acactgtcgc gaatgcgaaa ttcccctcgc cagacggcaa cttctccgcc ataccaatcc     10980
     ttaaaatatc caaagtaacg gtacttctgg ccaacagcca cctggtgtac cagatagcca     11040
     tcccgctctt ggatatccaa aaatttaatt tatttaaagc ctcgccgctg ccatctgtgc     11100
     agcgcgcgct aaatatttca aatatcgcgg cctatatttg gccctgaatt ccattttttt     11160
     gcagtaagcg aatctaacag atcgtacatg ccgatacccc cagaaagaat ccataagcta     11220
     cgcaagctcg gtgacctact gattgcagtt aaccctgaac caatcagaga aattcgaagt     11280
     aacgtcgcat gcgaaatcaa aatcgcgtca gggcacgcgc tgggaaaggc cgaacactgc     11340
     gatattcgaa taaaacagct acgcgacacg gtgtggctca gactccataa aacaaatgcc     11400
     tggatttttt ccgtcagcaa cgcagagaac atttacatac agtgccagcg agccgaacaa     11460
     ataacatctg aaataagtgg cacaggggta ctcgagttac gcccagggtg ctcagcgcac     11520
     actgcgaacg cgcacttggc cgcctcgcgc tcgctaacat cttacgcaaa cgcatcggtt     11580
     ttcgatatag tcgtattcaa cgtctccgca atgctgaccg aaataggtag tatcgaaggc     11640
     aaagcgatcg aactgcaaca agcaatcgag atcgaagcca aaaatcgagc ggaaaattcg     11700
     catggcgtaa aattcgaaac tttggaaacc ggtacggctc ttcgcgatat aacgacaaag     11760
     gcgcgggaaa tcgcggaccg caaagaaaag tcattcgagc tagagaattt gtcaagcttc     11820
     acgtcaaaat tcagctactc aagctggacg gctgtaataa taataattgt aatcataagc     11880
     ggcgtctgga ttatcaaaaa gcgtcgcgcc ggtcagccga tgcgcaaact aattaagcag     11940
     caggaaaaac agctagagct gcaaaccttg agggagatga accgggctag gagccgtgat     12000
     tagaactgcc atctacgcat cgttcacaaa taatttcttt ttctctctgt acaccattca     12060
     ccagcaagag aatcctcctg cccgcagttg gatacttctc cgttcataga ggtacggagg     12120
     cttcgaagcc ggataaatgg aactaagtta cgcgcagtga aacaatgatt gcttcaatat     12180
     attatgagtt taaaaaaaaa aaaaaaagcc aaattgcgac tagtactaaa acgacactag     12240
     ccgcgcagaa gcttaaaaag ctctctacca taataataat gaatgtttct ttttcaggaa     12300
     ttagaaaatc aaaatgttat cgttaaataa ttcactatgt aacttacgtc attatatatt     12360
     agcttctcat gggttttata tattactata tttgactatt tcaggggtac tactattagt     12420
     attaatattt gggcgtaaaa caaaataacg attagtcaat ttttcataaa atatcattta     12480
     tctcataaaa taatcagcgg aattattatt cagtctaccg cacatctagt attaaggaat     12540
     agaattatgt acatacagga gctccgttcc atacaaattg tgaagcagca gcggccgcta     12600
     aggaacaaca tccgcgttca cacgcacaca ctcacacata cacacacttg actagcgtct     12660
     cgcacgcaga agacggagga ggacgaaccc acacactctc ataatcctac tgtaagccag     12720
     tcaaaaaagg ggacacacat aaatacgcat acattcacac acacatgcac ttttcggcgc     12780
     ggtgttctga ctattttttg cataagttct gtttttttcg ggcgacgggg acgtctgccc     12840
     acgcgacctc ggacg                                                      12855
//
ID   Gypsy-34_NVi-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   29-JUN-2009 (Rel. 14.07, Created)
DT   29-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-303
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1382-1382 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 303 BP; 60 A; 100 C; 84 G; 59 T; 0 other;
     tgtcacggac gagctttggg ctttccggcg gcatctgcga tggcctgcat ttccggcgat        60
     gcgccagacg catcgtcagc ggaagaacac cgcggcccga aagtttccgc gcgcagaagt       120
     gcaacgctgc acttcggcac gtggaaccgc tcgccgtcga cgagtcgcgt cgacgagcga       180
     gcgggcagac caccggcgac tctccaagcg agcggagctc cgatattttg ggataataaa       240
     tacagtgaca ccgaacttcc ctgcctcttc tctctcctcg tgtacaccca ttcttccgtc       300
     aca                                                                     303
//
ID   Gypsy-34_SiCu-I repbase;    DNA;    INV; 4152 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4152
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5056-5056 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4058
FT                 /product="Gypsy-34_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSANDSFPPPEKFSFDAREWPSWIKRFDAFRTLSLLK
FT                 DKDQEYQVTALVYIMGEKADEILSSFSLSSADAKSFEKVKAAFNNYFIGKR
FT                 NVVYERACFGLRNQEEGETIDSFVTALHKLSEHCEYGALREDLVRDRIVLG
FT                 VQDKKLSEKLMLVDKLDLAKAVEASKQWEAVKRQQGDLQGSMKKNLDSLDQ
FT                 KTRNQTSSSTKKDSDKEPSSSTSSRSRKPTKSGLCKFCGNEHEFLKSKCPA
FT                 FGKECSNCSEPNHYSRCCPHKSSHSKSEKTGSANRVQCSDDTFTVGSINNS
FT                 RCADGTSRAQRWTEAIAVDGHPIDFKLDPGADVTSVPYHVFRKIWRHRRIF
FT                 ETRFRLEGPDETTLHVMGTIKAHLXCKETXMXEDIYIVKGLKRPLLGLRAC
FT                 EELQLVKRIXHXGTAETTQVRPTEEYPELFSGLGKLDTEYTIKLRPDARPF
FT                 AMFTPRRIPIPLTKIVKEKLEAMVKEGIIEAVDVPTEWCAPLVTTPKPNGD
FT                 IRLCVDLTALNRSVEREYHPMPVVEHTLGQLAGAKIFSKLDANSGFYQIPL
FT                 AEDSRNFTTFITPFGRFRFNRLPFGITSAPEHFQKRMMEILKDMPGVVIHI
FT                 DDILIFGSSDEEHDQRLRSVLQRLRDAGVTLNKEKCQFGIQAVQFLGHIID
FT                 KDGVRPDPSKVEAIANMAPPTDVTGVKRFLGMTNFLGRFIPHLASLSKPLY
FT                 ELTKRQHQFLWSPPQQQAFENIKELLTTAPVLALYDPNKHTVVSSDASSYG
FT                 LGTALLQRQEDGTMKPVAYASRSLSDAERRYAQIEKECLGIVWACERFRDF
FT                 LMGLHFQIETDHKPLLQILTVKCVDDLSPRLQRFRIRMMRYSFDISYVPGK
FT                 ELVTADALSRTPHDKHEDKEFQEEVSAYVCHVVSHLPASDEKLGQIWSAQH
FT                 EDSTLSTVIEYCQSEWPSQLPGNPQLKPYFHVRDELSVHNGILLRNSRLVI
FT                 PKKLQAEILGRIHEGHLGIVKCRARARESCWWPGISEEIAEIVRRCPVCVQ
FT                 ERKERKEPLIPMEFPSRPWQRLGMDLFKTQGKWFILVVDYYSRFPEVAELK
FT                 SMSSSAVINVLKIFFSRHGVPEEVISDNGPQFHPVLGSPFQEFAKDYGFIH
FT                 RTSSPRYPQANGFVENGVKIMKNLLQKNNDWYKAILEYRATPLSNGYSPAE
FT                 LLMGRRIRTTLPMTSSRFIPQEVDRSSLMSKEECRRGQQKMYYDRRHGVRT
FT                 KDDLSVGQTVWIKDLRIWGKIAGAAGTPRSYIVQTERGDFRRNSGHLIRGY
FT                 PPSPSFSDELEPDFDNEDAADDEESPNSPQQNVTRTRSGRQIRPPRRLIQE
FT                 I"
XX
SQ   Sequence 4152 BP; 1196 A; 963 C; 949 G; 1034 T; 10 other;
     tggtggcagc ggtaaaagaa caattttaaa ccagttttgc tgttagattt tgaaaactga        60
     ccaacccaga cccgttaaga ttacgttcac ctagacgttc agtgatccaa catctcaaca       120
     tgtccgcaaa cgatagtttt ccaccacctg agaagttttc ttttgacgcc agggagtggc       180
     cttcatggat taaacggttt gacgccttca gaactcttag tttgttgaag gacaaagatc       240
     aggaatatca agtgactgca ctcgtctaca tcatgggaga gaaagctgac gaaattctct       300
     cctccttctc tctttcgtca gctgacgcca aatcttttga aaaagtgaaa gccgccttca       360
     acaactattt tatcggcaag cgcaatgtcg tttacgaacg ggcctgtttc ggtctccgca       420
     atcaagaaga aggagaaacg atagattcct ttgtcactgc gcttcacaaa ctctccgagc       480
     actgtgaata tggagcgctc cgtgaggacc tcgttcgtga cagaatagtg cttggagtcc       540
     aggataagaa actcagtgag aagttaatgt tggtggataa actggacctc gccaaggcag       600
     tggaagcatc caagcagtgg gaggcagtca aacgacagca aggtgacctc caagggagta       660
     tgaaaaagaa cctggattct cttgaccaga aaacaagaaa ccagacctca tcatcaacca       720
     agaaagattc tgacaaagag ccgtcatcat ccacctcctc ccgatcaagg aaaccaacga       780
     agtcaggact gtgcaaattt tgcggaaacg agcacgaatt tttaaaatct aaatgtcctg       840
     catttggaaa agaatgcagt aactgcagtg aaccaaatca ttattcaaga tgttgtccgc       900
     acaagagctc tcattcaaaa tcggaaaaga ccggaagcgc caatcgtgtc cagtgctctg       960
     atgatacctt caccgtgggc tcaattaaca actcaagatg tgcagatggt acttcacgtg      1020
     cccaacgatg gactgaagct attgccgtgg atggtcatcc aatcgacttc aaactcgatc      1080
     caggagccga cgttaccagt gtsccgtacc atgtttttcg gaaaatttgg agacaccgcc      1140
     ggattttcga aacaagattc agattagaag gtcccgatga gactacctta catgtcatgg      1200
     gcaccataaa agctcatctc maatgcaagg aaacmmaaat ggasgaggat atatacattg      1260
     tgaagggtct caagcgccca ttactgggtc tccgagcgtg tgaggagctc caactagtwa      1320
     agcgcattma tcatktgggt acagcmgaaa ctacccaagt tcgcccaact gaggaatatc      1380
     cagaactttt cagcggtctc ggtaagctag ataccgagta caccattaag ctgcgcccag      1440
     acgctcgacc ttttgccatg tttactcctc gtcgtattcc aattccatta acgaaaattg      1500
     tcaaggagaa gttggaggca atggtgaagg agggaattat tgaagctgtt gatgtgccca      1560
     ccgagtggtg tgctccatta gtaacaactc caaaaccaaa cggagacatt agactctgtg      1620
     tggacttaac tgcgctcaac agatctgtgg aaagagaata ccatccaatg cctgtagttg      1680
     aacacactct gggtcaacta gctggcgcca aaatattctc caaattggat gccaattcgg      1740
     gtttttatca aattccacta gctgaagata gtcggaattt cactacattc atcaccccgt      1800
     tcgggcgctt cagattcaac cgacttccat ttggcataac atcagcacca gagcatttcc      1860
     agaagcggat gatggagatt cttaaggata tgcccggtgt ggttattcat attgacgaca      1920
     ttcttatctt cggctcatca gacgaagaac atgatcaaag attacgctca gtgctacagc      1980
     gactacggga tgccggggtc acgctcaata aggagaaatg tcaatttgga attcaagcgg      2040
     tgcagttcct tgggcatatc attgacaaag acggcgttcg tccagatcca agtaaagtgg      2100
     aggctattgc taatatggct ccacccactg acgttaccgg agttaaacga tttctgggaa      2160
     tgaccaattt cttagggcgt tttatacctc accttgcaag tttaagcaaa ccactttatg      2220
     agcttactaa gcgtcaacac cagtttctct ggagcccacc acagcagcaa gcgtttgaaa      2280
     atatcaaaga actcctaact acggctcctg tccttgctct gtacgaccct aacaagcata      2340
     cggtcgtttc gtctgacgct tcctcgtacg ggctcggaac agcattgctc cagagacagg      2400
     aagatggcac catgaagccg gttgcgtatg cctccagaag cctttcagat gcggaacggc      2460
     gatatgccca aattgagaag gaatgtcttg gaatagtctg ggcttgtgag agattcaggg      2520
     atttcttgat gggactacac ttccagattg agactgacca caagcctctt ctscaaattt      2580
     taactgttaa atgcgtggat gatctctccc cacgactcca acgatttcgg attaggatga      2640
     tgcgctattc cttcgacatt agctatgtac caggcaagga gttggtgacc gctgacgcac      2700
     tgagtcggac tccacatgac aagcatgagg acaaggaatt ccaggaggaa gtttctgcgt      2760
     acgtctgtca cgttgtttcc catttgccag cttctgacga aaagctcggt cagatttgga      2820
     gtgctcaaca tgaagactca acactctcca ccgtgatcga atactgtcaa tctgagtggc      2880
     cctcacaatt gcctggtaac cctcaactaa aaccatattt tcacgttcga gacgaactgt      2940
     ctgtgcataa cggaatattg ctgagaaact cccgactcgt catcccgaag aagctacaag      3000
     ctgaaattct tgggaggatt catgagggac accttggaat tgtaaagtgc cgagctcgag      3060
     cccgtgagtc atgctggtgg cctggtatta gcgaagaaat tgctgaaatt gtgaggaggt      3120
     gtccggtctg tgtccaagaa aggaaggaaa ggaaggaacc tctcatacca atggagtttc      3180
     cgtcacgccc atggcaacgc ttgggtatgg atttatttaa aacccaggga aagtggttca      3240
     tcctcgttgt ggattactac tctcgttttc cagaagtagc tgagctcaag tccatgtcgt      3300
     catcagcagt catcaatgta ttgaaaatct tcttctcacg tcatggtgtc ccggaagaag      3360
     ttatctctga caatggacct cagttccatc ctgtactggg atcaccattc caagagttcg      3420
     ccaaggatta cgggtttata caccgtacct ctagtccaag atatccacag gctaacggct      3480
     tcgttgaaaa cggagtgaaa attatgaaga acttgctgca gaaaaataat gactggtaca      3540
     aagccatttt ggagtaccgc gctactccac tctcgaacgg atacagccca gctgagcttc      3600
     tcatgggtcg tcgcatcaga acgactctgc caatgacttc aagtcgtttt attccacaag      3660
     aggtagacag atccagtctc atgtcgaagg aggagtgcag gcgaggtcag cagaaaatgt      3720
     attatgaccg tcgccacgga gtaagaacta aggatgacct tagcgtggga caaaccgttt      3780
     ggataaagga tcttcgtatt tgggggaaaa tcgccggtgc agctgggacc cctcgctcat      3840
     atatcgtaca gacggaacgt ggagattttc gtaggaactc gggacatctg atacgtggct      3900
     atcctccatc tccatccttc tcagatgaat tggaaccaga tttcgacaat gaagatgcag      3960
     ctgatgatga agaatcccca aattctcccc agcagaatgt aaccagaact cggtcaggac      4020
     gacagatcag gcccccacga cgattaattc aagaaattta agattatcaa aacaccagtt      4080
     taattttata atttatttga atattataat taattcatta tacaaattca ttaattatct      4140
     ttgaaagggg ga                                                          4152
//
ID   Gypsy-34_SiCu-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-231
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5111-5111 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 231 BP; 63 A; 52 C; 37 G; 79 T; 0 other;
     tgtgatatat ggggtattct cagaaagagc gaatgctcaa ctcattctca tgccgtgcgg        60
     tgagagcctc ttcttgagct catcacgcac aactgattct tgttctcctc ttgcctacaa       120
     ccttactttt gtatacctac cattctgtag ttaataaagt tcataataat taaagttaac       180
     tactttgtct cttcatttta atgttagtgc gagccaaagc ataacatcac a                231
//
ID   Gypsy-34_SiOr-I repbase;    DNA;    INV; 6120 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-6120
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 368-368 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           885..2186
FT                 /product="Gypsy-34_SiOr-I_1p"
FT                 /translation="MSVVKVTWEEILIKLSNLKEEVIKESKRVLKTKVPRS
FT                 ENIRNQVRDNLLTLYNDFIFTVNSCYNDLDDIKYNNNIKPLFNIIRDRVVR
FT                 SYQVLRVDYKIPTHVLRKIDPKIKDELFFVDLTEEDDSPNSDENIQIKIEQ
FT                 PIPLDFIMPLTGPEFFNLASKIVPNEFDGSEDRLTSFLDALTLLKANVEAH
FT                 EENAVAYVKTRLTGKARYLVGESATLDEIKTKLKNGIKFESSQSVTSKMLN
FT                 LKHHNDTKYMADIENLTQKLKQAYISEGVPESVAENYTKNTTVKALSTNTS
FT                 IEKVKIIMEAGSFQTVEEAIQKFVNVTAENSSSASVFYANRRQSRGTSRNY
FT                 FRGRGNFNQRVGNSSQYRNNGQSNYNNYSADRYQRNNHNMYEMSTNPNRGF
FT                 SYRSRPNRYVRTYDADQNPSSQDANQENGREPQQGPLGHS"
FT   CDS           4777..5775
FT                 /product="Gypsy-34_SiOr-I_3p"
FT                 /translation="STDRRTLWTKEILKKLRSKCRWKNMSRDVATYVKKCK
FT                 KCQLNKSKIKHIEPMVITPTPQQPFDIVSIDTIGPFTKSENNNAYAVTIQC
FT                 ELTKYVVIAPVPNKEALTVAKAIVENFILVFGPMKEIRTDMGTEYRNEVLE
FT                 KLSNILNISHKFSTAYHHESIGGCERNHRVLNEYLTSYINETHTDWDKWIN
FT                 FYAFCYNTTPGVYHEYTPFELVFGRKAEIPNEVLNKIDPWYNIDAYYQEVR
FT                 YRMQISHQRARDFLVKVKQNRKIKYDLISQNLSLQKGDLVMLKNENRTKFD
FT                 PWFKGPFTVVSTNGVNCTVKSENGKELTVHKNRVQKFNIAQ"
FT   CDS           2114..4561
FT                 /product="Gypsy-34_SiOr-I_2p"
FT                 /translation="SKPIFTGRQPGKRTGASTRSFGALLKVFNMDLTLSNF
FT                 VILQTDMTGEQNITLLVDTGADVSLFKRNKIDPQQIVNRSNICRIKGVTEG
FT                 YTNSIGTTNANIFIEDYVFSHNFHIVDRNFPIPADGILGRDFIVKYRCQLD
FT                 YNEWNMTLXTSDRNIILPIYNSPEDDVISVPPRCEVIRTLNSLXKVKQDSV
FT                 VLNEEIAPGVFVAGSIISNKSPYLRIMNTNFESIVIKNPKITYSSLENFDI
FT                 FYANSSKEASKPKRNDLLLKELNISSMPDFVKPDMIALCQEFSDIFSLEND
FT                 SLTTNNFYRQKLRLTDNTPVYIKNYRTPYSQVNEINKQVEKMLKDEIIEPS
FT                 QSEYNSPILLVPKKSNGAEKNWRLVVDFRHTVNKKLCADKFPISRIDEILD
FT                 QLGRAKWFSTLDLKAGFHQIPLEDSSRDITSFSTNTGSYRFTRLPFGLKIS
FT                 PNSFQRMMSIAFAGLTSEKIFLYMDDLICIGCSENHHLKNLKEVFETCRKF
FT                 NLKLNPKKCMFFQNNVTYLGHKVTSNGVLPDETKYDIIRNYPQPKSSDDAR
FT                 RFVAFCNYYRRFIKNFAEIARPLNKLLKKNSEFLWTEECQESFGKLKKLLL
FT                 EPQILQYPDFDKPFLLTTDASREACGAVLSQNFGGEDLPIAFASRGFTKGE
FT                 INKSTIEKELAAIHWGINYFRPYLYGNNFFVKSDHRPLVYLFSMKNPSSKL
FT                 TRMRLDLEEYDFEIEYIKGKNNVLADALSRITIEELKDINSKSAQIFAVTT
FT                 RSMANKANITNIDTNLQEVQRPDMTPKIIQTDDNYDLFPVPTLKFIIKPDC
FT                 LRIYGKMWKKEVRR"
XX
SQ   Sequence 6120 BP; 2289 A; 984 C; 1075 G; 1766 T; 6 other;
     tggcgaccct gcctacggac tcgtcgtcta tgtccgttgg gcacctaagt aacggtgtgg        60
     atgcgaattt gaattaagta cattaaaata ataatcaaaa atgggaaaaa cagtgtcgaa       120
     agaaagtgac gttacaagtt cgggagtggt tacttcgaat tttattgttg atgaacaagg       180
     attgtcgggc gtaccgcttg atgtgaagat tctcatgtat atcactacat gctgcatcgt       240
     tatcataacc gtggtgaagc tacggaaggc gtatagaaga gggctgaaga gaaatataag       300
     cagaagtatg tacctaagac ctcctcaacc ccmcgctgtc gaagatgctt aggggatgct       360
     aagctaagta acaccgaaaa aaaaactcca acacaaaaat caatggtatg tactgtctat       420
     gtttgtsact tacaagacgt ttggtttctg atggtatatg aaaaatacaa gtgaatcacc       480
     aaatatacga acttcccaga agaacataaa ataaaaataa cagtaagctg atgccaataa       540
     aaccagcaga tcatatttca acaakgaaag caaaggactt tcggtatatt tattgtttta       600
     ttattggcgt tggtcagttt taagttttat taggtcaagc acgttcgttt tactaatatc       660
     tacaggggaa ttaaaatatt aatttaatga tttatatttt tatttgatat gggtaaaaat       720
     tgatgaatta ttttaatttt atttacgtta ttacgtatat ttctatattt ttatatatat       780
     tttataataa tatatattta tgtactattt tatgattatt aatattagtg tattaatatt       840
     agtattttag ttgaactttt attttttggt ttattcamat tttaatgtca gttgttaaag       900
     ttacttggga ggaaatttta atcaagttat caaatttgaa agaagaagtt attaaagagt       960
     caaaaagagt tttaaaaacg aaagtaccca ggtcagaaaa tatcagaaac caagtgagag      1020
     ataacttact aaccctctat aatgatttta tttttactgt aaatagttgc tataacgatc      1080
     ttgatgatat caaatataat aacaatataa aaccattatt taatattata cgagatagag      1140
     ttgttaggtc ttaccaagtt ttgcgcgttg actataaaat ccctactcac gttttgagaa      1200
     aaattgatcc caagataaaa gacgagttat tttttgtgga tcttaccgaa gaagacgact      1260
     cacctaacag tgacgagaac atacaaatta aaatagagca accaattcca ttagatttca      1320
     tcatgcctct tactggccct gaatttttca atctcgctag caaaatagta cccaatgagt      1380
     tcgatgggtc tgaagatagg ctaacctcat ttttagacgc ccttacacta ttaaaggcta      1440
     atgtggaagc acacgaagaa aatgctgttg cttatgtcaa aaccaggcta acaggtaaag      1500
     caagatattt agtaggagaa agtgccactt tggatgaaat taagactaaa ttgaagaatg      1560
     gcattaaatt tgaaagctcc caatcggtca cctctaaaat gcttaatctc aaacatcata      1620
     atgatacaaa gtatatggcg gacatcgaaa atttgacaca aaaacttaaa caagcatata      1680
     ttagcgaagg cgtaccagag tctgtagcag aaaattacac gaaaaacacc actgtcaagg      1740
     ctttaagcac caacacaagt atagaaaaag tcaagataat tatggaagct ggaagtttcc      1800
     agacagttga agaagctata caaaaatttg taaatgtcac cgcagaaaac tcatctagcg      1860
     catcagtttt ctatgcaaac aggcgacaga gtagaggaac atccagaaat tactttcgag      1920
     gaagaggaaa ttttaatcaa cgtgttggaa actcttctca atacagaaac aacggtcaat      1980
     caaactacaa taattatagt gcagatagat accaacggaa caatcataat atgtacgaaa      2040
     tgtcgaccaa tccaaataga ggattttcct atagaagcag accaaacagg tatgtaagga      2100
     cttatgatgc tgatcaaaac ccatcttcac aggacgccaa ccaggaaaac ggacgggagc      2160
     ctcaacaagg tcctttgggg cactcctaaa agtttttaat atggacctaa cgctttcaaa      2220
     ctttgtaata ttgcaaacag atatgacagg agagcaaaac atcactctac tagtcgatac      2280
     aggagctgac gtatcattat tcaagagaaa caaaatagat ccccaacaga tagtaaatag      2340
     atcaaacata tgcagaatta agggagttac ggaaggttac acaaactcaa taggtactac      2400
     aaacgcaaac atttttatcg aggactatgt ttttagccac aactttcata tagtagacag      2460
     aaattttccg atacctgccg atggaatcct aggaagagat tttattgtaa aatatcgttg      2520
     tcaactagac tacaatgaat ggaacatgac cttagwaact tcggatcgga acattatttt      2580
     accaatttat aatagtccag aagatgacgt tatatctgtt ccaccaagat gtgaagtgat      2640
     aagaacgtta aactcactcm aaaaagtcaa acaagactcg gtagtattaa atgaagaaat      2700
     agctccagga gttttcgtgg ccggaagcat aatatcaaac aaaagccctt atttgagaat      2760
     aatgaatact aattttgaaa gcatagtcat aaaaaatccc aaaatcacgt attcttcttt      2820
     agaaaatttc gatatttttt atgcaaatag cagtaaagaa gcaagcaaac caaaaagaaa      2880
     cgacttgctg ctaaaagaat taaacataag ttcaatgcca gattttgtta aaccggatat      2940
     gattgcttta tgtcaggaat tctcagatat tttttcctta gagaacgatt cattgacaac      3000
     aaacaatttt tatcgacaaa aattgcgttt aacagataac acgccagttt atataaaaaa      3060
     ctatagaaca ccttattcac aggtaaacga aattaacaaa caagttgaaa aaatgctgaa      3120
     agacgaaata atagaaccgt ctcagtcaga atataatagc ccaatcctac ttgtaccaaa      3180
     aaaatctaat ggtgcggaga aaaattggcg acttgttgtg gatttccgtc atacagtcaa      3240
     taaaaaattg tgtgcggata agttcccaat cagcagaatt gatgaaattt tggatcaact      3300
     cggtagagca aaatggtttt ctacattgga tttgaaggca ggatttcatc aaataccgct      3360
     agaagatagc tcaagagata ttacatcatt tagcacaaac actggttctt accgctttac      3420
     aagactgccc tttggattaa agatcagtcc taacagtttt caaaggatga tgagtatcgc      3480
     ttttgcggga cttacgtctg aaaaaatatt cctgtacatg gacgatttaa tctgcatagg      3540
     atgctcggaa aatcatcatc tcaagaattt aaaagaagtt tttgaaactt gccgaaaatt      3600
     taatcttaag ttaaatccaa aaaaatgcat gttcttccaa aataacgtta cgtatttggg      3660
     tcataaagtt acatcgaacg gcgtactacc agacgaaacg aaatatgata ttattcgtaa      3720
     ttacccacaa ccaaagtcat cagatgacgc aaggcgattt gttgcatttt gcaattatta      3780
     tagacgtttt ataaaaaatt tcgctgagat agcaagacct ttaaataaac ttttaaagaa      3840
     gaattcagaa tttttatgga ccgaagaatg ccaagaatca tttggaaaat tgaaaaaact      3900
     ccttttagaa ccacaaattt tacagtatcc cgattttgac aagccttttc tgctcacaac      3960
     agatgcgtcg agagaagctt gtggagcagt attatcgcaa aacttcgggg gagaagacct      4020
     acccattgct tttgcatcga gaggattcac gaaaggcgaa attaataaat ccaccattga      4080
     gaaagaacta gctgccattc attggggaat taactacttt aggccttatt tgtatggtaa      4140
     taattttttt gtcaagtcag atcatagacc acttgtttac ctattttcaa tgaaaaatcc      4200
     atcttcgaaa ctaacgagaa tgaggttgga tcttgaggaa tacgattttg aaattgaata      4260
     cattaaaggc aaaaataatg tgttagcaga cgcattatcc agaataacga ttgaagaatt      4320
     aaaagatata aactcaaaat cagcgcaaat tttcgctgtt accacgagat ctatggcgaa      4380
     taaggcaaac atcaccaata ttgacaccaa tttgcaagaa gttcaacgac ccgatatgac      4440
     gccaaaaata attcaaacag atgataacta cgatttattc cctgttccta ctttaaagtt      4500
     tataattaag ccagattgtc tacggatata tggaaaaatg tggaaaaaag aagttcggcg      4560
     ctgaagggag atactcctca gcttcaaaaa atggctagtg aaaataagtt ggaaaaactt      4620
     aaattaaata taaatgatga aatattcaaa tcatacacga taagcgattt aaattagtag      4680
     gccaagatct tcgaaaatac tagaatatat acagggaacc aaagtaatta cggaggaaga      4740
     agaaaaattg aaattgatac aacaatttca tggtaatcca ctgacaggag gacattgtgg      4800
     acgaaagaga ttctgaagaa gttaagatca aaatgccgtt ggaaaaatat gtctcgtgat      4860
     gttgctacct acgtaaaaaa atgcaagaaa tgccaactaa acaaaagcaa aattaaacac      4920
     attgaaccca tggtaattac gccaactcca caacaaccgt ttgatattgt ttcgatagac      4980
     actattggcc catttacgaa aagcgaaaat aataatgctt acgctgtaac tatacagtgc      5040
     gaattaacca aatatgtggt cattgcacct gttccaaata aagaagctct tacggtggca      5100
     aaagcaatag tagaaaattt tattttagta tttggcccta tgaaggaaat tagaacagat      5160
     atgggtaccg aatatcgaaa tgaagtttta gagaagttgt cgaacatttt gaacattagt      5220
     cacaagtttt caaccgcgta ccatcatgag agcattggtg gatgtgagag gaatcacaga      5280
     gtgctaaacg aatacttaac atcttatatt aatgaaacgc ataccgactg ggataaatgg      5340
     attaattttt acgctttttg ttacaataca actcccggag tttatcacga atacactcca      5400
     tttgaactcg tttttgggag aaaagcggaa attcctaacg aagtattaaa caaaatagac      5460
     ccctggtaca acattgatgc atattatcaa gaagttaggt acagaatgca aatttctcat      5520
     caaagagcta gagatttttt agtaaaagta aagcaaaacc gcaaaattaa gtatgactta      5580
     atatctcaaa atctcagttt acaaaaaggc gacttggtta tgctaaagaa cgaaaacaga      5640
     acaaaatttg atccttggtt taaaggtcct ttcaccgtag ttagtacaaa tggtgttaat      5700
     tgtacagtga aaagtgaaaa tggtaaagag ctcacggtgc acaaaaacag agttcaaaaa      5760
     tttaacattg cgcaatgaca ttaatattag tgataacggc agtgccaatg ataattgtat      5820
     taatacagta tattctacag tctataaatt cttaatttat caaattgcat agatataatt      5880
     attttagcat taagtattta acgaatctag tatattaatt tatattttat attatactta      5940
     attattacga taacacgtat tgaaatttaa tttaggttta ataataataa tttctatttt      6000
     agagtactta aatgataata aattttattg gttgaattac attttctaga aactggccag      6060
     tctcaatttg cttgaatgaa attcattgcc ctgaatttca ttcatttgaa aaggggaaga      6120
//
ID   Gypsy-34_SiOr-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-204
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 402-402 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. -bp TSDs.
XX
SQ   Sequence 204 BP; 84 A; 31 C; 22 G; 67 T; 0 other;
     tgtggtgcaa ccaaatcaaa tgcttattca gtaaactctg ctattaaaaa taattagtat        60
     taaagtaacc tagttttaat attttacaac catagcaata atcaatcgaa cattataaat       120
     ttatattata caaaggtaga ataaattagt attagtatgg cacaatcgag taatcattta       180
     catgacccta aacacattct taca                                              204
//
ID   Gypsy-34_SpEx-I repbase;    DNA;    INV; 4774 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4774
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4103-4103 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..4753
FT                 /product="Gypsy-34_SpEx-I_1p"
FT                 /translation="MSKPEQLSSEQVLLLSDLLSKITTTMSTKSFAQCRAK
FT                 FNGERCYNKVEEFVTSISVFKKIEKISDDDALEGLSLVLTDKAATWWIGIK
FT                 SEIKKWSQAIDAIRCAFAPRKQPHEIYMEVFAKKQGNENIDDFVCEKRALL
FT                 AQLPTKRQKEEEHLDMVYGLLKISYKKEIARSDIKTFADLLERGRHLESLA
FT                 KEGEETTKFTTERKPIRRCAYCGKKGHTLEECRKRLADNKTTSTNIKPQNK
FT                 LACYGCGTPGVVRSNCVTCKNQETPPKPVAFCTMQATLESNAKIPTIPISI
FT                 KGETGYAYIDTAARTSIAGTQLYKKLIRHGTSFVERSADITLADGTIKTTT
FT                 LLTAIVDVVIGERILPIAFSAIPEAKNNRTLLGIDFLESSGIVLNLPQRAW
FT                 YFVDDPDKIFTILQLKNENIPLIATKSIDFNMETNTSLDVIQTTKLDNKNE
FT                 EETLPDFIKWARELNMVSPMMETPSPVRDEDGSPGNKRPRWILQKLDTPPR
FT                 PVRPREPADDNSCIDPRINYVKINPFKLYSLDIYLQPNEGNLLTINEQVAF
FT                 NELLAEYKDIFQRNTSPTPYIQHIIDTGNHPAISSKPYRLSPTRQQQLREK
FT                 LDDMIKNDIIEECDSPWSAPVILVPKGENDVRVCIDYRKLNEITKPDRYPL
FT                 PRIDDLLHQAKAMAYMSTIDLQSGYHQILVRPEDQDKTTFISPFGTFRFKR
FT                 MPFGLRNAPATFQRLMDRFIRGLKAEFALCYLDDVIIRSVSFSQHIQDLRE
FT                 VFDKLREYKLHANRKKCKFCCSKVKYLGHLIVPEGIKADPEKVSAISKLQE
FT                 PKNLKQLISFLQTASWYRRFIYNFAEIARPLTNLTKKKVVWQWNTQEQEAF
FT                 NQLKIALTTAPVLKQANSDVPFTIKTDASQYAIGAALVQGEGREEHPVEYA
FT                 SRLLTPAECNYTVTEKEALAIVWAVSRFRGYIEGTRFITITDHQPLKWLMN
FT                 LKTPTGRLARWALQLQPYEFVIQYTPGRTNVVADTLSRPPCSNHDDSKCTI
FT                 CRFEVEIPKLTEKHLREEQLKDEHLKTIIETLEEGNETKNYVEWTKKGFLL
FT                 HKGVLYRYIPEQDDENAKLLVPRHEIPNILKVYHDDPTAGHTGVERTLQRI
FT                 TNKFYWKGLRKDIIKYIKTCVECQKYKPTNQKPAGLYQSSPNYHRFEVLSI
FT                 DLFGPLPTGPQDEKWIFIVEDTASRWVELFALKEATSENCAIILINEVFLR
FT                 YGLPRKLVSDNGVQFISAVMQKLTFCFEIKQVYTPVYHPEPNMVERKNRDM
FT                 KSQIAIMVKENHHNWPSTLPAIRFAMNTAMCQTTGASPSYLTFGRELRTVY
FT                 DLTHDLSTILESENFVKEITPTMRKLTQDLALAKKTIEQNLKASCNRANAK
FT                 RRKDPGYKPGDLVLVETHPISSNEKQFTAKFAPRRDGPYIVLKKHGVSTYE
FT                 VANPKSPEKSMGKYHTSALCKFEQRDGNVPTPLNPIRKRGRPRKMDTDPGT
FT                 QSGRL"
XX
SQ   Sequence 4774 BP; 1724 A; 920 C; 917 G; 1213 T; 0 other;
     ttggcgccca acgttataaa ataatccaca ggataaaaat atatgttgat ctacattaga        60
     aacaacgtta tcaaatcgcc tacagaataa aaatattttc gcctaccctc atatgtgtac       120
     ggcctacctt aaacattggt acctgcatag taaagtaccc acaacattga aaagtgaaca       180
     ataacttgga atggaatcat ctacagaata aaaatatttt ggcctaccct catattttta       240
     cggcctacct tctaaattgt atggagtacc cgcacactta ttgaagtacc cacaatattg       300
     aaaagtgaaa cctacattgg catacattga aagattatta gaaatgtcaa aaccagagca       360
     attgtcgtca gaacaagttc tacttctatc tgatttgctt tcaaaaatta ctacaacgat       420
     gtctacgaaa agttttgcac agtgccgagc taaatttaac ggcgaaaggt gttataataa       480
     agtggaagaa tttgtaacaa gcatatcggt ctttaagaaa attgaaaaaa tatcggatga       540
     tgatgcatta gagggtctgt ctttagtgtt aactgataaa gcagccacgt ggtggattgg       600
     aataaaatct gaaattaaga aatggagtca agcaatcgac gcaatacggt gtgcttttgc       660
     gccgagaaaa caaccgcacg aaatctacat ggaagttttc gcaaagaaac agggtaatga       720
     aaacatagac gattttgttt gcgaaaagcg agccttgttg gctcaattgc caacgaagcg       780
     gcaaaaagag gaggaacatt tagacatggt gtatgggttg cttaaaatat cgtacaagaa       840
     ggagatagct cgcagtgaca tcaaaacatt tgctgatcta ctggaacgcg gtcgccatct       900
     tgaaagcctt gcaaaagaag gtgaagaaac cacgaaattt accacggagc gtaagcctat       960
     aaggagatgt gcctactgcg ggaagaaggg ccatactttg gaagaatgtc gcaaaaggtt      1020
     ggcagacaat aaaacaacaa gcacaaatat caaacctcaa aacaagttag cttgttatgg      1080
     ctgtgggacg ccaggtgtgg taaggagtaa ctgtgtgacg tgtaaaaatc aagaaacgcc      1140
     gcctaaacct gttgcattct gtacaatgca agcaacactg gaaagcaatg caaaaatacc      1200
     gacgatacct ataagtataa aaggtgaaac aggatatgca tatatagata cggctgcccg      1260
     tacaagtatc gctggcactc aattatataa gaaactaatt cggcacggta cgtcgttcgt      1320
     cgagcgctcc gctgacataa ctttagcaga tggtaccatt aaaacgacca ctctgttaac      1380
     agcaatagtt gacgtagtaa taggtgaacg catattacct attgctttct cggcaatacc      1440
     agaagctaaa aataaccgca ctcttcttgg cattgatttc ctcgagtctt caggtattgt      1500
     gttgaatctg ccacagaggg cgtggtattt tgttgatgat ccagataaga tttttacaat      1560
     attgcaactc aagaatgaaa acataccact gattgcaaca aaatcaatag atttcaacat      1620
     ggaaacaaat acatcactgg acgtaatcca aaccacaaag cttgataaca aaaatgaaga      1680
     agaaacactc ccagacttta ttaaatgggc aagagaattg aacatggttt ctcctatgat      1740
     ggaaacaccc tcaccggttc gcgacgaaga cgggtcaccg ggaaacaaaa gaccccggtg      1800
     gattcttcaa aaactggaca cgccaccgcg cccagtacgt ccaagagaac cagctgatga      1860
     taattcttgt attgatcctc gcattaacta tgtaaaaata aatccattta aattgtattc      1920
     tcttgatatt tatttacaac ccaacgaagg taacttactc acaattaatg aacaagtagc      1980
     tttcaatgaa cttttagcag aatataaaga tatatttcaa aggaacacaa gtccaactcc      2040
     atatatacaa cacataatag atacaggcaa tcatcctgct ataagtagca agccatatag      2100
     gttatcgcct actagacagc agcagcttcg agaaaaactt gatgacatga tcaaaaacga      2160
     cattattgag gaatgcgatt ctccatggtc agcaccagtc attttggttc ctaaaggcga      2220
     gaacgatgtc agagtctgta tcgattatcg aaaattaaat gagataacta agcccgacag      2280
     atatcctttg ccacgcatcg atgacttatt acatcaagca aaggctatgg cttatatgtc      2340
     aacaatcgat ctacaatcag gctaccatca aattttggta cggccagaag atcaagataa      2400
     gacaactttc atttccccgt ttggaacttt tcgttttaaa cggatgccgt ttggattacg      2460
     caatgcgcct gctacttttc aaagacttat ggacagattc atacgaggtc taaaagctga      2520
     atttgcacta tgttaccttg atgacgtaat tattcgttct gtctctttct ctcaacatat      2580
     acaagattta cgagaagtgt ttgataagct gagagaatat aaactacatg caaaccgaaa      2640
     aaaatgcaaa ttttgttgct ctaaagtaaa atacttggga catttaattg tacctgaagg      2700
     aataaaagcg gacccagaga aagtttctgc tatttctaaa ctgcaggagc ctaaaaatct      2760
     aaaacaattg atttcattcc ttcaaacagc atcctggtat aggagattta tatataattt      2820
     tgctgaaatt gcaagaccat tgactaactt aacgaaaaag aaagttgttt ggcaatggaa      2880
     tacacaagaa caggaagcct ttaatcaatt aaagattgca ctaacgaccg caccagttct      2940
     aaaacaagct aattcggatg tgccatttac tataaaaact gatgccagtc agtatgctat      3000
     aggagcagct ttggtgcagg gggagggtag agaggaacac cctgtagaat atgcaagtcg      3060
     attacttact cctgctgaat gtaactacac agtgacagaa aaagaagcgt tagctatagt      3120
     atgggctgta tcacgctttc gaggctatat agagggcaca cgttttatta caataacgga      3180
     tcatcagccc ctcaaatggt tgatgaacct gaaaactcct actggtcgac tagcaagatg      3240
     ggctcttcag ctacaaccgt acgaatttgt cattcagtac actccaggtc gcacaaatgt      3300
     tgttgctgac acattgtcac gaccaccatg ttcaaatcat gatgatagta aatgtacaat      3360
     ctgtcgtttc gaggtggaaa ttccaaaact aactgaaaaa cacttacgtg aagaacaatt      3420
     aaaagatgaa catttaaaaa ccattattga aacattagaa gaaggaaatg aaacaaaaaa      3480
     ctatgtagaa tggactaaga aaggtttcct actacacaaa ggggttttat atcgttatat      3540
     accagaacaa gatgacgaga acgcaaaatt attggttcca cgacatgaaa taccaaatat      3600
     acttaaagtg tatcatgatg acccaactgc tggacatacg ggtgttgaac gaacactaca      3660
     acgtataaca aataaatttt actggaaggg actccggaaa gatattataa agtacatcaa      3720
     aacatgcgtt gaatgtcaaa aatacaaacc cacaaatcaa aaaccagctg gactatacca      3780
     atcttctccg aattaccaca gatttgaggt actgtcaatt gatctgttcg gtccgttacc      3840
     cacaggacct caagacgaaa aatggatatt tattgtagaa gacacagcct cacgctgggt      3900
     agaattattt gccttaaaag aagctacatc tgaaaattgt gctataatat taataaatga      3960
     agtattccta cgttatggct taccaagaaa actagttagc gataacggag tacaattcat      4020
     ttcggctgtc atgcaaaaac ttacattttg ttttgaaata aaacaggtat atacacctgt      4080
     ataccaccca gaacctaaca tggtggaaag gaaaaacaga gatatgaaat cacaaatagc      4140
     aattatggtt aaagaaaatc accacaattg gccaagtaca ttaccagcaa tacgcttcgc      4200
     gatgaatact gctatgtgcc aaaccacagg cgcttcgcca tcatatctaa catttggtcg      4260
     tgaactacga actgtatatg atttaacaca tgatttaagt acaattcttg aatcagaaaa      4320
     ttttgtgaaa gaaatcacgc ctactatgag aaagttaacg caagatttgg cattagcaaa      4380
     gaaaactatt gaacaaaatc taaaagcaag ctgtaatcga gcaaacgcta aaagaagaaa      4440
     agatcctgga tataaacctg gtgacttagt gctggttgag acacatccaa taagcagtaa      4500
     tgagaaacag ttcacagcca aatttgctcc acgcagagac ggtccttata ttgtccttaa      4560
     gaaacatgga gtatccacat atgaggtagc aaacccaaaa tcaccagaga aatccatggg      4620
     aaaatatcac acttcagcat tatgtaaatt tgaacaaaga gatggtaatg tgcccacacc      4680
     cttaaatccc ataagaaaaa gagggagacc aaggaagatg gatactgatc ctggtactca      4740
     gtcgggacga ctatagagta ccagaggggg agat                                  4774
//
ID   Gypsy-34_SpEx-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-481
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4163-4163 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 481 BP; 144 A; 116 C; 103 G; 118 T; 0 other;
     tgtaacaaac atacagcgcc atctagcgta atacgatgag cggcagtcat aaactagaag        60
     acagctacag tagacaagtg acgccatcta cacactgcgt gtcgaactgt ctgcgtcagc       120
     gccggtccgc atcaccacta cagacatcaa cgtgtagata ttgtgcacac atgtaaacag       180
     tctgccttta taagcagaac agtctttgag aatttcattc gactagctag aggatcagag       240
     ttcggtagcc acgcagccaa ttctgagcct aagtaagact agttcctgtt cgatagccta       300
     gcggtcttca ggaactagcc agctagggga ggttgaatgg cgatagccac gcagtccctt       360
     tcatccctcc acttagggtt gccttaagat tagtgcatat tgtaaagtgt atctttatat       420
     aagacaataa actatcgtct agtacaacgg ggctttaatt tcaaaaacca gcaaccctac       480
     a                                                                       481
//
ID   Gypsy-34_TrNi-I repbase;    DNA;    INV; 4213 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4213
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 237-237 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..4145
FT                 /product="Gypsy-34_TrNi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSGAVFGVLSVFDHNGQSWETYKCRIKQWFVANDITE
FT                 TSDPTGTKRRAILLSALADGTHKLAADLALPKQLQDVPYEDVLRLLDEHFI
FT                 PKRCGFGERCKFYEATQHEAETYAEWAARLRGLTAHCGFSNVEEALRDKFV
FT                 MGMLPGSDREKLFAKNLAGLTLSKAMELAENARSARAAAGAGEQAAPREVF
FT                 KVTQAPGPATPPQRKAIPSSDFKGQCQVCGYHNHETSQCRFAKAKCRKCNA
FT                 TGHLRKMCKKINFVDLKAEDESDDDGKCFNIRSAKGEPMTETVTVSGVKLK
FT                 FEIDSGSAVTAISESIYEKHFSDVPLSATRKRLLSYTGDKIICVGIAQLQV
FT                 TYAKTTHWLWVYVVRDGGPPILGRDFISKFKLEFAMPVRYCKQVDGNELIH
FT                 TLQGRYPLVFSDKLGLFNKFKVKLQVKEDAKPVFVRARPIAFALKDKVDKE
FT                 IDRLIGLGILKPVDHSRYASPIVPVLKQNGSIRICADFSTGVNKQLVIDQY
FT                 PLPTVTELFAKLYGGQQFTKLDLSNAYNQFMLHEDSQELTCINTHRGIYKQ
FT                 TRLCFGIASAPALFQRAIEGVLGGVPGTLCLLDDILITGKTRSEHLDRLHQ
FT                 VLSKLQDAGLTLQKDKCVFFSDEVNYLGYVINKDGLHKSPQKIKAMTEAPV
FT                 PTNVNQLQSFLGLVNYYRNFVPNASAILCPLYNLLRKGSKWCWTQEHDDAF
FT                 LTIKKSLASDQVLAHFNPESTIILTVDASPLGLSAILSQLETDGSERPISF
FT                 ASRTLSAAEKSYSQIQKEATAIIFGVRRFHQYLYGRAIPFILRTDHKPLLS
FT                 IFGPQRGIPEVSANRLQRYALFLSGYNYKIEYVRSANNSADFLSRACLPEG
FT                 AGTDRGGRETDATMPDLDRASYINFVVEGSLPVTVNLLREATSTDATLNRV
FT                 VHFVLNGWPRKIDDDAIKPYFACRTQLSYEQGCIMRGHKVVVPEKLHGKIL
FT                 KELHQSHLGIVKTKAEARARVWFPGIDAALERMIGACDVCMQLRPSPTRAP
FT                 IAHWEYPATPFYRIHIDFMGPINGNSFLVVVDAYTKWVEVYNMRGDTSTSA
FT                 TIDKLYEFMSRFGIPHTLVSDNGTSFTSYEFEAFCRVNGISHMTSPTYHAA
FT                 SNGQAESYVKIVKKGIKTSLLTGCGARNSNNLLLKYLFDYRNSVHTTTGFS
FT                 PAELVYGRKLKTRLDLIKPESPSSSSSALANVVKRKQCLQNKTRGQNIQVF
FT                 VPGDKVYYKNQTVNSKFSWCKGTVLKRIGKVIYLIKDDSTSKIQRKHKNQI
FT                 ILFKSDDCKTKPKDTDIDIEELTGDPTLEIQDQNSADNMAAESPQGTLPLP
FT                 SPDQSGGEKEYEEACSGSPSPGHLEEAAPDQQTVEPPPIRRSRRNLPSVNY
FT                 KVFY"
XX
SQ   Sequence 4213 BP; 1284 A; 795 C; 1051 G; 1082 T; 1 other;
     ttggcgacga ggattaaaat tacccacgca aataagaagt aaaaatgtcc ggcgcagtgt        60
     tcggcgtttt atcggtattt gaccacaatg ggcaatcgtg ggagacctac aaatgccgca       120
     tcaagcagtg gtttgtggca aatgacatta cggagacgag cgatccgacg ggaacaaaac       180
     gacgagctat cttgctgagc gcactcgcag atggcacaca taagctggca gcagacctcg       240
     cgttaccaaa acagctgcaa gacgtaccct acgaggacgt gcttagactg ctggatgagc       300
     attttattcc taagcggtgt ggattcgggg agcggtgcaa gttttacgaa gcaacgcaac       360
     atgaagcgga gacatacgcg gagtgggccg caagattgcg cggcctaacg gctcactgtg       420
     gattttctaa tgtcgaggaa gctttacggg acaagtttgt catgggcatg ttgccgggat       480
     ctgacaggga aaagctattc gcgaaaaatc tagcaggcct gacgttgagc aaggcgatgg       540
     agttggcgga gaacgcgcgg agcgcacgag cagcagcggg tgccggggag caggccgcgc       600
     cgcgtgaagt gttcaaggtc acgcaggcgc cgggtccggc gacgccgcct caacggaagg       660
     cgatacctag ttcagatttc aaagggcagt gtcaagtgtg cggctatcat aaccatgaaa       720
     catcgcagtg tcggttcgcg aaagcgaaat gtaggaaatg taatgctacg ggacatttgc       780
     gtaaaatgtg caaaaaaatt aattttgttg atttaaaagc tgaggatgaa agtgacgatg       840
     acggtaagtg ttttaatatt agatcagcta aaggggaacc gatgacggaa acggttacgg       900
     tctcgggagt taaattaaaa tttgagatag atagcggttc ggccgtaacg gcaatttctg       960
     agagtattta tgaaaaacat tttagcgatg taccattgtc ggcgactagg aaacgattat      1020
     tatcatatac cggcgataaa attatttgtg tgggcatcgc tcagttacaa gtgacatatg      1080
     cgaaaacaac acattggctg tgggtttatg tcgtgcgaga tggcggtcca ccgattctag      1140
     gtcgcgattt tatttcaaag tttaaattag aattcgctat gccagtaaga tattgtaaac      1200
     aagtggatgg aaatgaattg attcacacac tgcaaggtcg ttatcctttg gtattttcgg      1260
     acaagttagg gttatttaat aaatttaaag taaaattaca agtaaaggaa gatgctaaac      1320
     cggtttttgt aagggctaga ccgatagcgt tcgcattgaa agacaaagtt gacaaagaaa      1380
     tagatcgtct aataggatta ggcattttga aacccgtgga ccactctcgg tatgcgtcac      1440
     ccatcgtgcc tgtattgaag caaaatgggt ctatacgtat atgtgctgat ttttcgaccg      1500
     gggtaaacaa acaattagtt atcgatcagt atcctttgcc tacagtaaca gaactctttg      1560
     ctaaattata tggtggtcag cagtttacta aattagattt gtcaaatgct tataatcagt      1620
     tcatgttaca cgaggactcg caagaattaa cttgtataaa cacacacagg gggatttata      1680
     aacaaactcg tctttgtttt ggtattgcga gtgcgccggc tttgttccaa cgggcgatag      1740
     aaggcgtgtt gggtggcgtg cccggcacac tgtgtttact cgatgatatt ttaattaccg      1800
     gtaaaacgag atcggaacat ttggatagat tacatcaggt actaagcaaa ttacaagacg      1860
     caggactgac cttacaaaaa gataagtgtg tgtttttcag tgatgaggtt aattatttag      1920
     ggtacgtgat aaataaagat ggacttcata aatcaccgca gaaaattaaa gccatgacgg      1980
     aagcaccggt tccaactaac gtcaatcaat tacagtcatt tttggggttg gttaattatt      2040
     ataggaactt tgtcccaaac gcctcagcga ttttatgtcc tttgtataac ttgctgagaa      2100
     agggtagcaa gtggtgttgg acacaggagc atgacgatgc gtttttgact attaaaaaaa      2160
     gtttagcttc agatcaagtt ttagctcact tcaacccaga gtcaactata attttaaccg      2220
     tggatgcatc accgttaggc ctgtctgcaa tattatcgca attagaaacc gatgggtcgg      2280
     agagaccgat ttcgtttgcg tcgcgaacac ttagtgctgc ggagaaaagt tactcacaaa      2340
     ttcaaaagga agcgaccgca attatttttg gtgtaaggcg atttcaccaa tatttatacg      2400
     gtagggcgat tcctttcatt ctccgcaccg atcacaaacc attattgtcg attttcggac      2460
     cacagcgtgg tattccagaa gtatcagcga acagactaca aagatacgca ttatttttga      2520
     gcggctataa ttataaaatt gaatatgttc gtagcgctaa taacagcgcg gacttcttat      2580
     ctcgcgcctg tttaccggag ggggcaggga cggatcgagg cgggcgggaa acagatgcaa      2640
     cgatgccaga cctcgatcga gcctcgtaca ttaatttcgt ggtagaaggc agtctgcctg      2700
     taaccgtaaa cttattacgc gaggcgacaa gtacagatgc gaccttgaac agagtggtac      2760
     atttcgtgtt gaatggatgg ccaagaaaaa tagatgatga tgcgattaag ccgtactttg      2820
     cttgtaggac gcaattatcg tatgaacaag gatgtattat gagagggcac aaagtagtag      2880
     ttccggaaaa gttgcatgga aaaatattaa aggaactgca ccagtctcat ttaggtattg      2940
     ttaagacaaa agcagaggcg cgagcgcgtg tgtggtttcc ggggatagac gcggcgttag      3000
     agcggatgat aggggcatgt gacgtttgca tgcagctgcg gccatcaccg acgcgggcac      3060
     cgatcgcaca ctgggaatat cctgcaacgc ctttttaccg gatacacata gatttcatgg      3120
     gacctattaa cggtaactcc tttttagtgg tagtagatgc atatacaaag tgggtcgagg      3180
     tttataacat gagaggcgat acgtcaacat cagcgacaat agataaatta tacgagttta      3240
     tgtctagatt tggtatccca catactctgg ttagcgacaa tggtacttca ttcacgtcat      3300
     atgagtttga ggctttttgt agggtgaacg gaatttckca catgacgtca ccaacatacc      3360
     acgcggccag caacggacag gcggaaagct atgttaagat agttaaaaaa ggtatcaaaa      3420
     cgagcttgct tacgggttgt ggagcgcgga attcaaataa cttacttttg aaatacttgt      3480
     ttgactatag aaattccgtt cacacaacaa ccgggttttc accagccgag ctggtctacg      3540
     gtaggaagct aaagacgcgg ctagatctaa ttaaacccga gtcaccgtca tcttcatcct      3600
     cggctcttgc taatgtggta aaacgtaaac agtgtttgca aaataagacg agaggacaga      3660
     atatacaagt ctttgtgccc ggtgacaaag tatattataa aaatcaaaca gtaaatagta      3720
     agttttcgtg gtgtaaagga acagtgttaa aaagaattgg caaagtaata tatttaatca      3780
     aagacgatag tacttcaaaa atacaaagaa aacataaaaa ccaaattata ctgtttaaaa      3840
     gtgacgattg taaaaccaaa ccaaaagaca cagatataga catagaggag ctaactggtg      3900
     acccaacttt agaaatacaa gaccagaata gtgctgataa tatggctgcc gagtcacctc      3960
     aaggaacgct tccgcttcca tcaccagatc aatctggggg agagaaggaa tatgaggaag      4020
     catgttccgg ctcgcctagc cctggtcatt tagaagaagc agcaccggat cagcaaacgg      4080
     ttgagccacc acccatacgg cggtcgagac gcaatcttcc gagcgtcaat tacaaagtat      4140
     tttattagca tgtatgttgt attaagttag tatattagtt attaatttgt atgtctgagc      4200
     tggtggggag gag                                                         4213
//
ID   Gypsy-34_TrNi-LTR repbase;    DNA;    INV; 106 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-106
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 191-191 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 106 BP; 24 A; 20 C; 26 G; 36 T; 0 other;
     tgttgagtat gtgtgcgtgt gcctacgcac gttaacgttt gtttaaaata aagggcagtg        60
     cgttactagc aagccgttgt ttcactcgtg taccttgtac ttaaca                      106
//
ID   Gypsy-34_TrVa-I repbase;    DNA;    INV; 6207 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6207
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 279-279 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..1913
FT                 /product="Gypsy-34_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MADDLFRFAETLFKTPKDRRHREASAKSQQLHECWLK
FT                 LSEAEKSAEIVGLYNRCVVFIKAASSEKTEEMADFELKTASSIVPEFDGST
FT                 DNIXDFIDCAKYYNESLKAAGQKLFLTYLLKVKLRGKAKTAIIKAPESFED
FT                 FETLLKTRFKPKTTVSALQHNLSVLQQGTKPVTDFAAEIETLVNRLTDLQV
FT                 AEMGSASRETVQALNERLALNVLKRGANTKIQPVLLASQTADFTSGVTLAL
FT                 EAESNLGSLNPSHSVNYVQKSYSRRYSNHNRGGYRGNNWRGKKNWNSSDRS
FT                 HNQSRSQGQRWQRGNGSRNKHSQSDTGSNSYQGNGSGHYRGNNQRSRGGKN
FT                 SYRQQGNGKGVVASPQSAGVATVQLLPESSNQVPTHEYFTST"
FT   CDS           1760..5557
FT                 /product="Gypsy-34_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QSAFPWGKKLLPSTGKRQRGRRFTAVSRGGDRPTFTR
FT                 IVQSGADPRVFHVNIEGKTNYVYLHTDFSERPLTCLIDSGADISIFKENVI
FT                 SKAQQSEICTENKCVIRGVSTTEQSTLGTLNTHLRFENFEFEQRIYVVDSK
FT                 FPIFTDGILGRDFFVKYKCKIDYESWLLYATMGNVEISIPMHFRLNTGKNI
FT                 VIPPRVEILQAISLDLSEDSVIFNRELAPGVFLANSIAPRVGIKHVKIVNT
FT                 TQEPVTLGVFQVSFKPLSSYNLHIPKKFSAEEAQKRSSFVKAEIKKDMVNA
FT                 PPEQVESIMEICAKYHDIFHLPGDLLTVNNFYEQDITLLDKTPFHVKNYKP
FT                 IKSQQGELRKQVQELIDNKIIERSTSPYNSAVFLVPKPSENTLENKMRMVV
FT                 DLRELNKRIQKDSFPLPHMDQVLSEIGRARFFSVVDLQSGFHQIPLRKSKR
FT                 NLTSFSVPGLGAWQFTRLPFGISVGPASMVRMLTIALAGLEDCAFQYVDEI
FT                 FIYGVSLIHHNRNLTKVFDRFRSCNLKLHLKKCHFLRKEIRFLGNKLTDQG
FT                 VLPCNKRFEILDHFPVPTDQKAVQRLVAFGNYYRKWIPNFSLIVMPLNKLL
FT                 RKNIKFEWLPIHQTAFENLISALKSPQVLAYPDFSQPFILSCDSSNFAFGA
FT                 VLSQDFHGSRRPIEFASKTLSKADQMKSIVEKEALACHWAINHFRSILYGR
FT                 TFLLETDAKCLVSLFKQKDPSAKMTRIRLDLASYDFNISHIAGKTNVVADA
FT                 LSRIHLSSDELKNMTPTDKDVHAITRSMTAKNIENESQKKDVIMNESSQQP
FT                 SVENGQLNIWEATSNVEIENLGKLRFRIFPVSDTRSSCKTSEIRYDNGNCD
FT                 IHLNLSNNSTAHLSNALEKLNKRFNDATFSLSLIDDIFNYIDINAFKTLIQ
FT                 EKLTRNKIILFQPTQNVTNKREQENIIKHAHSDTSSGHCGFKRTLEKIRQR
FT                 FYFKGMTALVKDYISKCTSCKLGKIQRHSKEPFVLTDTPKNAFEICEVDTC
FT                 GPLPLSENGNRYFISVQCNLTKYIVLFPVVDKQATSVAKALVNNFMLKYQI
FT                 PKCIKTDAGTEYVNQLLDEICILLQIDRKTSTGFHHESLASCERQHRVINE
FT                 FYRTVQETQNSDWENWLPYFSFSYNTSPNTVHGFTPHELIFGSLAKLPNLP
FT                 DIRQNKIYDLANYREELRHKLSHAQEIARAKLILAKEKQNFKMNKDLKPSN
FT                 YKIGDFVKLKQETSSKWQRPYAGPFRLLRPEGVNSVIQNVQNQKIKKVHNN
FT                 RLRPF"
XX
SQ   Sequence 6207 BP; 1967 A; 1112 C; 1131 G; 1995 T; 2 other;
     tggcgaccgt gacaatcgga tcttcttcgg aaaagttttt ttcaatttaa tatttttttt        60
     ttatcttttt tttccggttg tttctttttg cgcgttaccc ttttttaagt tatttttacg       120
     catcatcgaa tatgggtggc tccacttcga aatccgagaa atccgcgaaa gaaacagtag       180
     ttgtctccgg gcaggcaaat gtaacttttg gtgaatcaca ccacgatgcg gcccaatggt       240
     ggtgcattgg tgctctattg tttctctttt ttatcattgt ggttgttttt gcgattggcc       300
     gggtactaaa atggtgccgt gccttggagc aagaaaggaa taacttgcgc gcgacggtgc       360
     tcgagcttcg cggaagctca gttaaatctg tttaaaactc aaatattgag ttaatcgttg       420
     tttatgcgga caatattttt tctgtttttt ttttgttatt ctagagaata ttctcttgtt       480
     tgttttctca tcggttgatt ttgattatat tttttttaat tgctatttwt aataatgata       540
     atatataatg atatatataa ttgattttga ttatttcgtt tttttttaat tgatatttag       600
     tgtgtttttt tttgtgatcg atgttttaaa tttttcgcgt ttgcaattta gtgttaaaat       660
     tgtgtgtgta acaatcatgg aacgatttcc acaagaaatt ttgcaggctc ctcgcgagta       720
     tttagtgcga aagagcgaga gagtacttgt accttgttat ggcggatgac ctttttcgct       780
     tcgccgaaac cttatttaaa acaccaaagg atcgccgaca tcgcgaagca tcggctaaat       840
     cgcagcaatt acatgaatgc tggttaaagc tatccgaagc cgaaaaaagt gcggaaatag       900
     tcgggctcta caacaggtgt gtagttttta ttaaggctgc atcaagtgaa aaaaccgaag       960
     aaatggcaga tttcgagctt aaaaccgcat cctccattgt tccggaattt gacgggtcta      1020
     cggacaacat camcgatttt atagattgcg ctaaatatta taatgagtcc ctaaaagctg      1080
     cagggcaaaa gttattttta acgtatcttt taaaggtaaa attaagaggt aaggctaaga      1140
     cagccataat aaaagcaccc gagtcttttg aggacttcga aactttatta aaaacgcgtt      1200
     ttaaacccaa aactacagtt tcagcacttc agcataacct ttctgtatta caacagggta      1260
     ctaaaccggt cactgatttt gccgcggaaa tcgaaactct tgtgaatcgc ttaacggact      1320
     tacaagtggc tgaaatggga agtgcttctc gcgaaacggt acaggctctg aacgaacggc      1380
     tggctcttaa cgttttaaaa agaggggcaa atactaaaat tcagcccgtg cttcttgctt      1440
     cacaaacagc agattttact agtggtgtta cgctcgcgct tgaagccgaa tctaatttgg      1500
     gatcccttaa tccctcgcac tcggtaaatt acgttcaaaa gtcgtactct cgcagatatt      1560
     ccaaccacaa ccgtggcggt tatcgtggaa acaattggcg tggcaagaaa aattggaatt      1620
     catccgacag aagtcacaac caatcccgtt ctcagggtca aagatggcaa cgaggcaatg      1680
     gatctcggaa taaacactca caatcagaca ctggtagcaa ttcatatcag ggcaatggct      1740
     ctggacacta tcgaggtaac aatcagcgtt cccgtggggg aaaaaactct taccgtcaac      1800
     agggaaacgg caaaggggtc gtcgcttcac cgcagtcagc aggggtggcg accgtccaac      1860
     ttttaccaga atcgtccaat caggtgccga cccacgagta tttcacgtca acatagaagg      1920
     taaaacgaat tacgtatacc tacataccga tttttcagag cgaccgctca catgtttaat      1980
     tgatagtgga gcagacatat caatttttaa ggaaaacgta ataagtaaag ctcaacagtc      2040
     tgaaatatgt acagaaaata aatgtgtaat tagaggtgta agtactacag agcaaagcac      2100
     tctgggtact ttaaatactc atttgagatt cgaaaatttt gaatttgagc agcgaatata      2160
     tgttgttgat agtaagtttc ctattttcac cgatggtatt ctcggtagag acttttttgt      2220
     taaatataag tgtaaaatag attatgaatc ctggttactt tatgcaacta tgggaaatgt      2280
     agaaataagt attccaatgc attttcgcct aaatacgggg aaaaatatag taatcccgcc      2340
     gagagttgaa attttgcaag ctatttctct tgatttgtca gaggacagtg taatttttaa      2400
     cagagaattg gcaccaggtg tatttctagc aaactctatc gctcctagag taggcatcaa      2460
     acacgtaaaa attgtgaata cgacgcaaga accagtgacg ttaggtgttt ttcaagtatc      2520
     atttaagcct ttaagttcat ataatttgca tattccaaaa aaatttagtg cagaagaggc      2580
     acaaaaacgc tcttcttttg ttaaagctga gataaaaaaa gacatggtta atgctccccc      2640
     tgaacaagta gaatctataa tggagatttg tgcaaaatat cacgatattt tccatttacc      2700
     aggtgatttg ttaacagtta ataactttta cgagcaggat ataaccttgc tagacaaaac      2760
     tcctttccat gtaaaaaatt ataaacctat taaatcccaa caaggagaat tgcgaaaaca      2820
     agtgcaagaa ttaattgaca ataaaattat tgaacggtca acaagtcctt ataatagtgc      2880
     agtttttcta gtgcccaaac cctctgaaaa tactctagaa aataagatga gaatggttgt      2940
     cgacctacgt gaactcaata aacgtattca gaaggattcc tttcctttgc ctcatatgga      3000
     tcaggtctta tcagagatcg gaagggctcg ttttttttca gtcgttgatc tccaaagtgg      3060
     tttccaccag attccccttc ggaaatcaaa aaggaactta acgagtttct ctgtgccagg      3120
     tttaggagct tggcaattca ctagattacc ttttggaatt tcagttggtc cggcaagtat      3180
     ggtaagaatg ctcacaatag ccttagcagg tttagaagac tgtgcttttc aatatgttga      3240
     cgaaattttt atttatggtg tctcattaat tcatcataat cgtaatttaa ccaaagtttt      3300
     tgacaggttt cgttcgtgta atttaaagct ccatttgaaa aaatgtcatt ttcttagaaa      3360
     agaaattagg tttttaggta ataagctcac agatcaaggc gtattaccgt gcaacaaacg      3420
     ttttgaaatt ttagatcact ttccagttcc tacggatcaa aaagcagttc aaagactcgt      3480
     tgcatttgga aattactata gaaaatggat accaaacttc agcctaatag taatgccatt      3540
     aaataaattg ttacgtaaaa acattaaatt tgagtggcta cctattcatc aaactgcctt      3600
     tgaaaactta atatcagccc tcaaaagccc tcaggttcta gcataccctg atttttcgca      3660
     accttttata ctgtcttgcg attccagcaa ttttgccttt ggcgccgttt tatctcagga      3720
     ttttcatggt tcgcgaagac ccatcgagtt cgcgagtaaa acattgtcaa aggcagatca      3780
     aatgaaaagt attgtagaaa aggaggcttt agcctgtcac tgggcgataa atcattttcg      3840
     tagcatttta tacggtagaa catttctgct tgagactgac gcaaaatgtc ttgtttctct      3900
     tttcaaacaa aaagatcctt cagcaaaaat gacacgaata cgacttgatc tagcttcata      3960
     tgattttaat atttcccaca ttgcgggaaa aactaatgtt gtagcggatg cactttcacg      4020
     tatccacttg tcttcagacg agttgaaaaa tatgacaccg accgacaaag atgtgcatgc      4080
     aataacgaga tctatgactg cgaaaaatat tgaaaacgaa tctcaaaaga aagacgtaat      4140
     tatgaatgag tctagccaac aaccaagtgt tgagaacggc caactcaaca tttgggaggc      4200
     tacatctaat gtagagatag aaaatctcgg taaattgcgt tttcgtattt ttccggtaag      4260
     tgacactcgt tcgagctgta agacaagtga aattcgatac gacaacggaa attgcgacat      4320
     ccatttgaac ctcagcaata actccactgc tcatttaagc aacgcactgg aaaagctgaa      4380
     taaacgtttc aatgatgcca cattttcctt gtctttaata gatgatattt ttaattacat      4440
     agatattaac gcattcaaga cgctaattca agaaaaattg acaagaaaca aaataatttt      4500
     gtttcaacca actcaaaacg tgacaaataa acgtgaacaa gaaaatataa taaaacatgc      4560
     gcactcagat acttcgtctg ggcactgcgg atttaagcgt acacttgaaa aaatcagaca      4620
     acgcttctat ttcaaaggaa tgactgcctt agttaaggat tatatttcaa aatgcacttc      4680
     atgcaaacta ggtaaaattc aacgtcattc aaaagagccg tttgtcctca cagacacccc      4740
     aaaaaatgct ttcgaaatct gtgaagtcga cacttgcggt cctttacctt taagcgaaaa      4800
     tgggaatcgt tacttcataa gcgttcaatg caacttaacc aaatacatcg tacttttccc      4860
     tgtagttgat aaacaagcaa catccgttgc aaaagccctc gtaaataact ttatgctgaa      4920
     atatcaaata ccgaaatgca ttaaaacaga tgccggtact gaatatgtga atcagttact      4980
     tgatgaaatc tgtattttac ttcaaataga tcgtaaaacc tcaacaggtt tccatcacga      5040
     aagtttggct agctgtgaac gccaacacag ggttataaat gagttttata ggacagttca      5100
     ggagacccaa aattcagatt gggaaaactg gttaccatat ttttcttttt cttataatac      5160
     tagtcctaac acagttcatg gatttacgcc ccatgaatta atttttggtt cattggcaaa      5220
     attgcctaat ttgcccgata tccggcaaaa taaaatttat gacctagcaa attaccgcga      5280
     ggaattgcgt cataaattgt cccacgctca ggaaattgcc agagcaaaac taatcctcgc      5340
     aaaggaaaaa cagaatttta agatgaataa agatttgaaa ccttcaaatt ataaaattgg      5400
     tgattttgtt aaactcaaac aagagactag ctctaaatgg caacggccat atgctggacc      5460
     cttcagactt ttacgtcctg aaggtgtgaa ctcagtaatt caaaatgttc agaatcaaaa      5520
     aataaaaaag gttcataata accgattacg acctttctaa ttttttacct ttttcatatt      5580
     gttgaaaatg tctttttctt ttcctttttc aaaaatgtat tatacctttt tcaaatttca      5640
     gttgcgttcc tgaaaatatt tttaatttta ttgcgttttc atttgatttt ctttgttgat      5700
     ttgtcaacat cttttctttc taggttctaa ggtatgttat atcgtgttag tattattttg      5760
     tcataaggtt tagacagact ttcttttttt aaaaaaaaaa aagaaaaaga gtaaattcag      5820
     tgattttttt tttgttgttg ttgtattatt tgctgtaata ttaattcctt ttctcttgtt      5880
     attagcataa aataagatta aaaatggtgt gaatgcgtga gagtgaatgt ttcttatagt      5940
     ttaagggtaa aatttacaaa actgttatgt taattctttt ttattttcta ccacatggtt      6000
     tttataaatt tccatgtttg aaatttaatt actttaatct catttagaag taatatactt      6060
     acacatagtt tttgttagtt agtttttttt tgagaggtat cttcgtccat tttcaatttt      6120
     caattttcaa ttttcaattt tcaattttca attttcaatt ttcaattttc aatttaatga      6180
     cctcagctcc cttttaaaga gtggggg                                          6207
//
ID   Gypsy-34_TrVa-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-34_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-210
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 338-338 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 210 BP; 56 A; 45 C; 40 G; 69 T; 0 other;
     tgtagtggta atacaccatt tagtgtgtgt gcatgtattt tcctattgtt ttatgtcata        60
     catgctgaca tcagcttttc cgctgatcgg cctgctgccg gtcaacggat ggacgagaca       120
     gtctagtttt gaatatgaat aaagcatatc gtacttctca aaccgggtaa tctttcattt       180
     aattaaactc cctaaaacct gcgcacaaca                                        210
//
ID   Gypsy-350_AA-I repbase;    DNA;    INV; 6139 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-350_;
KW   Gypsy-350_AA-I; Gypsy-350_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6139
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6139
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 181-181 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6139 BP; 2123 A; 1367 C; 1183 G; 1465 T; 1 other;
     ggtgtcagaa gtgggatatt tataaagtga gtgttgttaa agtgcttagt gtaacagctc        60
     cagaggaatc gcatcacgct ccgcatcagc acgaggaacc atccttcgag caccgcagcg       120
     acatcgacca gacggacgac aacatttaag ccgctcacag aaccggaata gatgctacgg       180
     attttatcgt aagtaataat tcccgcctat accagcctta ctttctatcc gtaaaaatgc       240
     cacgcgatcg tgacaacagc agtgaacttg agcagttgag ggatcagatc gcacagcttc       300
     aagccctcgt tcaagggacg ggaaatgctt accatattcc cgacccaatt aaacaattgt       360
     ccgaatacac aggcaataaa aaagaattaa atgcctggct ccaggaagta gatgaacttt       420
     tcgaagagtt caaaattaaa ggagagaatg gtgctccaga ttctataaac gcccactact       480
     taagggctat aaaaaataaa ttaagagggg aagcccgtac agttgtttgt gcaaacggca       540
     atccagacac aatacaagag ttgaaacaaa wtcttcggga caattttggc gatcaaagag       600
     atttcgtaac aaatcttaac caattgtttc atatacgcaa gggtgataga agcaacagca       660
     agtattttaa tgagataaaa gaattaaata cgaagctgaa gtcaaaccta cagctccacc       720
     cattaagcac aaccgaactg ctggagatcc ttacagtgac caaattttta gatgggatca       780
     gtgaaccatt agcttcaatt atccgcaatt ctaaaccaaa atcccttgac gacgcttatc       840
     aatccgtcgt tatcaatcaa aacgccgaaa ctaggaaacc cattcagaag caaacgtatt       900
     caagcaaatt tactccatac aaatcacaga atgcacaggc aaacgattct cgtcccccac       960
     aagctagcgc ttcgcaaccc aacacctttc ataaacataa aaaaccgttc tacagtaagc      1020
     ccagggccga aactaatcac acggaggaga atgatatcat aagtgaacct gaagaagagg      1080
     aacagaagga agaatacgat acattggaca gtgacgcaga atgcgatgag ctaaattttc      1140
     agaaggtcaa gaacaaggaa cgaccgattt aaactttata ccatacctga ggtttcctac      1200
     cacaaaaggg tacctcaact ttttaatcga cactggggct aataaatcat atattaaccc      1260
     cgaacatgtt aaaaaatctt ccaaagcgaa gtctccttca attgtttcaa ataaaaatgg      1320
     gaaattcctt attgacaagg tagttcacgc taacctcttt tcggaggcat tcagcacaaa      1380
     gctcccctat catgtcttca aatttcatca ttttttcgac ggcctaatcg ggtatgaaaa      1440
     catagcatcg atgaaagcct tgattgactc caaaaaccac cagcttgtag taggtgataa      1500
     aaagtatcaa ctcgcacgat actatccctc ttcgatgaac tttcatgaac agaccgatca      1560
     gatggtaacc atttgcacta cggcagatgg cacatttcta atcgaggatg aaataaacct      1620
     caccccaagc atttcgctga aacctggctt atattccgcc aagggacacc aagcttctgt      1680
     ccacttatcc actgttaaac caggtgtgaa agccaatatg aaaccatttg caaacgaaaa      1740
     gtttcttttg aatcagaatg agacttgttg caaaattaac ttcaacgcaa gtcacatgaa      1800
     cgaggaagaa aaacgtgagc tagtaaaaac gctcaaacct ttcaaggacg ttttctttag      1860
     tgaaggccaa aaactgacgt tcacgcacga ggttaagcat cgaattgaaa ctagcgatga      1920
     taagccagtg caccaaaaaa cctataaata cccttatcat ctaagggatg aagtatccga      1980
     tcaagttcga aagatgcttg attcgggtat aattagagag tcatcgtctc cttggacatc      2040
     acccatctgg gtggtaccca aaaaaatgga taactccgga aaaaagaaat accggatagt      2100
     agtagactac aggaagttaa atgagaaaac tcctgcagat cgatacccta tcccagaaat      2160
     cagtgaaata ctagaccggc tcggaaaggc ccaatatttc acagtattag atctggccag      2220
     tggatttcac cagatcgaaa tagatcctaa agacatccca aaaactgcat ttaatataga      2280
     ccacggcaaa ttcgaattcg ttcgaatgcc atttggccta aagaatgccc ctgcaacatt      2340
     ccagaggctt atggactctg tccttcggaa acacctggga ataagatgtt ttgtctatat      2400
     ggacgacatc ataatattct catcctctct gaaggagcat gttaaggaca tcgcgaaagt      2460
     cctagagaca ttacgcgatg caaatctaaa ggtgcaatgc gacaagtcgg aatttctccg      2520
     caaggaggtc gagttcctcg gtcacgttgt taccacagaa ggggtgaaac caaaccccag      2580
     taagatagag gctattctaa attggccact accaaaaacc ccaaaacaac ttaagtcttt      2640
     ccttggaacc gttagctatt atcgccgctt cataccggga tttgctaaca ttgccaaacc      2700
     actcaccagc cagttgagag gtaaaagcaa agtcataaac tatgacacca aagactttga      2760
     acattccttc aaaaagctaa agcaaatcat gtctacagat ttgttgctag cttatccgga      2820
     cttcaataag ccattcattc ttacgacaga cgcctccaac attgccattg gagcagtact      2880
     gtcgcaatta gaagacggaa aggagaggcc gatagcatac ctttcacgca cgctgtccaa      2940
     ggcagaggag aattactccg cgacagccaa agaactgcta gctatctatt ttgctgctaa      3000
     aagatttcga ccatatctct atggcaaacc ttttacgatt tacactgatc atgagcctct      3060
     gaccaaagag ctcaagctca ccgatgccac tggacgagtc actcgacaga ggctttactt      3120
     ggagcagtat gatttcaaaa ttgtttacaa gaagggtaag caaaatgtgg tagctgatgg      3180
     attatcgcga atcccaccag tcgagttaaa cttacaggaa ctcttcagcg aatgctaccc      3240
     aaatgacgct atctatggtc ctgaaataat caataagttt caaaaccaat tgattattcg      3300
     attagatagc aatgaccgga aaagcccgca tgtgatgtgg aaggtcttcc ccggccaaag      3360
     aaggcatatc tttcacaagt caaattattc aagagatgaa ttggcggcta taatcaaaaa      3420
     atatttagat ccagccgcaa gtaacggcat ttttggaccg ttagagataa ttaagatttg      3480
     taaggaaatc atcgaaacag attttaataa aaatttaaag atacactatt ctaacattct      3540
     attacctgat ctcatttcag ccatggacca acaggatttt atacgcaaat cgcataattt      3600
     caaccatagg aattacaaac taacgtacga ggaagtgaga aaatctgctt actttcctgg      3660
     tatgttgggt aaagtcaaaa ccttcgtaaa aaattgcgaa gagtgcaaat tcgcaaagta      3720
     cgaaagaaga ccattcaaaa ttccaatttc gagaagaata tacgacgagc cttttggaaa      3780
     cgtctttatt gacgtatacg ttaaagagac tcagaaattt ctaaccgtcg tagattcctt      3840
     ctccaaattt gcgcaattat atcaaatctc cagcgaaagc actgaagagc taacagaagc      3900
     actaatcgag tatttcaaaa tcttcggatt gccgaaaatg attacttgtg accaggcaac      3960
     aggatttaga aatgctcggt tcaaagaatt tctggagagg caaggagtcg ctctgcactt      4020
     cgctagtgac agtagaggca atgggattgt ggaacgattc cacaatacat tgcttgaaat      4080
     gtacctagct aatcgtagca aagtcgaaaa cttgactctc tacgagggac tggcaattat      4140
     aacagcgctc tataatgata cgaagcatag cgccactaac ctgaaacccc gcgaaattat      4200
     tttcggaacg agttcatcct tgatccctgc agaaattaat ctcgcgaggc aaaggaatat      4260
     tcaaaccgct cgggacaata tcaaggcaat ggccacaaaa gagaacgaca aaactaaagc      4320
     agatgaaaac aaatacaaaa ttttaagtga aaaacaagta ttggtcaaag gaaaggctaa      4380
     gccacaccct tctggcaacc gatacagact gatagacgta acgaaacaga cggacaagac      4440
     tgtcaccgac ggacataaca taaagacaca caagactgac atcaaacttc tctgacaccc      4500
     aactatttta ctttcagact atgttttttg gcgacggtgg cttcaaaatt cttacatgtc      4560
     cacgaccttg ggcagaaccc ccttgcagtg gtaatgatgg gcgacgctag aatcagcagc      4620
     agtagcctta ggattctaca cagaataaac ctagagggca tagaggaagc gatcgagcag      4680
     attaaactag tagtcgaaaa tagggtttgg aaagatgata tactagggcc attgattaat      4740
     ctaaaattaa ataaactaac cgaaacttac accaaactaa ggccagttac gtcgagacgt      4800
     agaaagagat gggaaacctt aggttcagct tggaaataca tctccggtag ccctgacgcg      4860
     gaagacttga gaatcattaa tagaaccaca aatttattga tagaccagaa taacgaacaa      4920
     gtcaaaatta accggtactt tgagaataga tttcaaaata tgtctacatc tttatcaatg      4980
     ttcatttcaa atgtctctaa cgaaattatt gatcggatga gttcagtcaa cttgcttttc      5040
     aacatagatg aattaacaaa acacttagaa acaatagaag aggccattgc attggctagg      5100
     gcaaatatcc ccagcagccg tctcatcacc gcacaggagc tgcagctagc caggaatttt      5160
     atctcggata accaccttgg cttagactca cccaatgata ttctcgacat cgcaggcgct      5220
     tatatcctac acaatgctct acaaataatc tacgttctta agattcccaa gataaaagcc      5280
     atcaactacg agttatacta catagagccc atcatcaata atggttcgaa aatccacatc      5340
     cagtcaaatt atctccttaa aggcatcaaa tcatacacag ttcaatcacc atgtccaaag      5400
     ttgaaaaacc tttacatttg ttccaactcc gacctcaaac cgacagatga atgccttacg      5460
     aaattaacta gtggaagctc agccgattgt cccatagaaa aggcatacag caagaaccac      5520
     atcaagagaa ttgatgaagt caatgtcatc atcaacaacg gaaacactac catatcatca      5580
     aactgtttgg atgaaccgag aagtttagtt ggatcctttc taatccaaat gtcaaattgc      5640
     tcagtataca tagacggaga ggagtacgtc aacctggaca ccatcatacc aaccaaatca      5700
     ttcttaccaa cgaccggact aaaggtaaat gctaccaaaa ttatagaccg tataccccta      5760
     gagtatttac agacatttca cctggagcat cgagaaaccc ttaggaagtt gaaccttacc      5820
     acggaaaaca ttcagttaag gctcaacatc ttcaaatggc tttctttcgg gtcaacctct      5880
     actacgatga tcatatgcat tggagtcttt ttcatttggc tattccgagg tattatccta      5940
     cgcattagtg acgtcaacaa gaaagagatg gtgccaccag aatcgagaga ggaacttagt      6000
     accatttccg agcctagaaa accgaggtta atcccgcaac aatgaagacc ctgcacaccg      6060
     acgaacgccc ggagcaacgg aggaccgtag ctgccgaaga tcgcgaaagc cgaggacggc      6120
     tttcaagtag acggggagt                                                   6139
//
ID   Gypsy-350_AA-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-350_;
KW   Gypsy-350_AA-I; Gypsy-350_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-270
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-270
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 210-210 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 270 BP; 74 A; 50 C; 70 G; 76 T; 0 other;
     agtcaggaaa atctggtagg tggattagcc aataggaacg tttggcgcgc aacgcggcgg        60
     tatcacgcca cgcggtgcac caatcaggtg ttaggcatag gaatgtgcaa ggtgtgcact       120
     aattcttaat aaaagcgagc cagcagcgtg gctcggtctc ttgttcttgc tagttaggtg       180
     tacaagtaag gttacttata tcaatagaca cttttgtatt taaagtttgt gctttttaaa       240
     aagtgatcta acgtgaagaa tcccctgact                                        270
//
ID   Gypsy-351_AA-I repbase;    DNA;    INV; 7408 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-351_;
KW   Gypsy-351_AA-I; Gypsy-351_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7408
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 182-182 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7408 BP; 2366 A; 1619 C; 1417 G; 2006 T; 0 other;
     aatggcgccc aacgtgaatt agtgattgaa aaagtttcta ctttaggatt aaattagaat        60
     ctttttcaaa tgtgctccgg gagaaatcga aattcgttaa atttctattc tatctgaaat       120
     cagaaaaagt tagttacaac aaattgcgtt cttttgtgtg cagaaacaat agtgaaacaa       180
     ttggattata atttgtgaat tgaacaattg ccattatgaa tacctattga tacaatgacc       240
     cattatgaat agacctttat tgaattattt gtattgaatg atttccattg aattattagt       300
     gaacaatagt gacctttagt gaatagattt aaattgaatt agtttctttt gtgaattact       360
     tttctttata ctgcattgat tattttgtga attacttctt catctatcga tatattttgt       420
     gagtagcata tttttttgca atggctatgg tgcgtccaga ttacttgcat gcaagtgaaa       480
     tgattttagt gtggtaccat gatataaggg tggaccattt agaaaacgat gagctgcttt       540
     gtgaattggc tttgcgaaat atagtgattc gtgatgatgc gtctttctca cgcagacgta       600
     ggagcttacg tgagcatctc aagcttgaaa agcaagagaa aaagcatttg gatgcaggat       660
     ttgtgggaaa taaagtagag gaaatgacaa tctgtgaaaa aaagtttcag gagctttctg       720
     aaatggtgaa acaaaatgat cgagttgtac gaaccaaatg taaaaccagg cttttacatt       780
     acgggcatag agtataccag ttgttaaaag tggaaaatat tagcacagaa gagagtagct       840
     ttttgaaagc tctattggtt gacattaccg aaattttaca aaaagagttt tacacagaaa       900
     atgcaaaccc ttctaatacc gaacatgaag ttgacaatga acaggctttg attaatttgt       960
     tcactgtgaa cccagagtct tcaaaccgcc atattatcac tcaagaacct gcccaagcat      1020
     cgaatcaagt ttcaaatcag aatctggatt ctgtttcaaa tcagaatctc agttctgcat      1080
     catttcaaat tcgtatcgaa cagcttgaaa ctgaattagc caacttacgc ttattagcaa      1140
     ctcaagctac agttacaaat tcaggcaggc ccatgagtca cacaacacca caggtggatt      1200
     cgaacttaac tccggcaaat caaccttcag ttgggttcac aaacccgcct tatacatatt      1260
     tttcaaattc ctatcaaaat attcctcaaa ttaaatcgac aacgcaatcc atccctcaaa      1320
     ttccgtcaat tgattccaga aatcatccaa ccagttcaca gtcttggttc aatcctagtt      1380
     ttccaacaat ggcacctcaa actaataacc cacctcaaaa tacttaccaa actcattcac      1440
     attaccctca aattcctatt ccattctcgc cttacccaac gtatccatca acagcatcat      1500
     ctaacccttc acgtcacacc ttacctgttt cgcagtggaa aataaccaaa tatgagggaa      1560
     ccgatcaggg tatcaatctc aatgagtttt tagaaatcgt tcagaccttt tcgctagccg      1620
     aacatgtgtc cgaggttgag ctatttgaat ccgctgttca cctttttgcg ggccctgcat      1680
     taaagtggta tatgaccatg cgcaccacag gtcgtttgct caattggcaa catttggtgt      1740
     tggaattgaa gcggaccttc atgcaccccg atttggacgc tctgataaaa atgaaaattt      1800
     atcagcggcg ccagcagaga agtgaatcat ttcatgaatt ttattatgag atggaaaaac      1860
     ttttccgatc catgtgcgta caaattcctg agtatgaaaa ggttcagatc ctactccaaa      1920
     atataaggat agactacaag aagcaattaa cttttctccc aataactgat ttgccttctt      1980
     tgattgctgc cggtcaaaag atcgatgcat tgaacttctc ggcatacaac aaagtttttg      2040
     gaatagaaaa aacagtaaat gccgttagcc aaggcaaatc caagccaaat tcggccgagg      2100
     ttaatcaaaa ccgacaacca ccgtcacaaa caccacctaa tccccgtacc aaccatccca      2160
     acaaaacgaa taggcaaaat tatcaaaatt cgcccaaaaa tcaaacacag gcacccacgc      2220
     ataatcagtc ccaacagaga ccaagattga cgttggaaag tctcatagat tcgtatcaac      2280
     cccctccaga aaacacctgt tataactgcg gcatatacgg gcattctatc agagaatgtc      2340
     gtgccccaag ggccgttcta tgtgaaaatt gtggtttccg tggttaccct tttcgaaatt      2400
     gcccatactg tttaaaaaac gccatgtcag cgagcgaaaa acgcggctcg ctgaacccct      2460
     aggtgcgtgc aaatttcatt atccatttcc ttccaattgc ttcgaaagag catctgagga      2520
     tatgtactca cgagacccta ttacatgtct gattacttac ccgtacccta acgacaatcg      2580
     tccatacacc accgtaacgg tgtatgagca taaaatccga gctcttttag acagtggtag      2640
     taaccttacc ataattgatg attcggtcta ttctaatttc aaatcacata aaatttcacc      2700
     acttcaaaat cccataacat tacgaaccgc aggaggagaa cagttgcaaa ttcgtggtca      2760
     gcttgactta cccttcactt tcaacggtgt gaccaaaatt gtcccgaccc tagtggtacc      2820
     aaacctagcc atccgttgta tttgcggtat ggacttctgg gccaaattca atattcaacc      2880
     cactattggt gagtgtgccc tagtagacga tgaggtttat gaaccgccct ctaaatcttc      2940
     catttgcatc ctcactaccg aggagaagca agaaatcgaa agtatcaaag cactttttat      3000
     cccagctcgc caaggacagt tgtcactgac tccattggct gagcaccgga ttgaaattca      3060
     agaggaatgg cgaaacaaac ctccagttcg ccagttccct tatgtaatgt cacctaaaac      3120
     tcaagggttg gtggccacgg aattgcaacg actgcttgat acaggtatta tcgaacgcag      3180
     taattcagca tggtcactga actgcgtgcc tgtaattaag cctaataaag ttcgcctctg      3240
     cttagacgct cgcaaaatca acgagcgtac tgtacgtgat gcgtacccct tgccacaccc      3300
     tcatcgcatt cttagccaac ttcctaaagc taactatctt tcaacgatag atctctcgga      3360
     agccttcttg caagtaccat tgcatccggc ttcgaggaaa tatacagcgt tcagtgtgca      3420
     aggcaagggg ctgtttcaat acacccgaat gccttttggt ctggtcaata gtccagctac      3480
     cttagctaga ctaatggaca gggtactagg ccacggtgta ttggaaccgt atgtcttcgt      3540
     ctacctcgac gatatcgtcg tggtgacgga gacattcgag catcacgtgc agttgctcca      3600
     agaaattgcg cgccgactaa gagatgcgaa cttgtcaatt aatctggaaa aatcccaatt      3660
     tggcgttcca gaaataccat tccttggata tctgctcagt actaatggtc tgcgagccaa      3720
     tccagaaaag actcgaccca tcgtcgaata tgcgaggcca aacaccatta ctaaactgag      3780
     aagattcttg ggaatggtaa attattaccg ccgttttata tccgatttca gtatgatcac      3840
     ggcggcattg accgatcttc tgaaaacgaa atcgaaaatt ataaaatgga acgaggaagc      3900
     agagaaatcc ttttgcacca tcaaagagcg actggtcagc gctccaattc tgggcagtcc      3960
     cgactttact agggaattta caatccagac ggatgccagc gacgtcgccg tggctggtgt      4020
     cctgactcaa cagcaagatg atggcgaaaa ggtcatatct tactattcgc ataaactgac      4080
     tactccgcag cggaactacc acgcagccga gaaggaagca ctggcagctc tgcttgccat      4140
     agaagccttc cgaggatata ttgagggttc tcactttaaa ctgatcacag actcctctgc      4200
     cctaacacac attctcaata ccaaatggaa ggtgggctca aggtgcagtc ggtggagctt      4260
     ggatctacag cagtttgata tgtctgtggt acacagaaaa ggcaaggaaa atgtagtccc      4320
     agacgcatta tcaagaagca tagctgtagt ccaagataca ccggctgcct cctggcactc      4380
     ctcattggtc gagaaagtta ggaataagcc agatgagttt gctgatttcc gcatagatga      4440
     tggaattcta atgaaattcg tcacggcaaa gaatgaaccg tatgattcac gctttgagtg      4500
     gaaaattgtt ccattacccg aaaatatacc taccttactc caggaaaacc acgacaccaa      4560
     cttccaccaa ggctatgaca agactctgaa tcgtatccaa aaacgttact attggccgaa      4620
     aatggcctca gaaatacgca aatatgttca aaactgtaca acgtgcaaag aaaccaaagc      4680
     ttcttatgta gcgatcacgc cagagatggg aaaaatgcgc caagcatcac ggccatggca      4740
     aattatatcc atcgattatg taggtcctct ccctcgaagt aaaaagggga accaacacct      4800
     gctagtaatc agcgattact tctccaaatg ggtgatgata catcccgttc ggaaaatcga      4860
     cagttcagct atgtgttcag ttctgaagga tcagtggttt tatcgaaatt ccgttccgga      4920
     gataatcatc acggataacg gtagcgtctt tacatctaag gtgtttaaag acctactaga      4980
     tcacttccgc attaaacact ggctgaactc gcgttatcac tcgcaggcaa accctgtcga      5040
     gcgagtgaat cgtacgataa attctgccat cagaacatat gtacgtgaag accagcgaat      5100
     gtgggataca aagctctctg aaatcgagat gattcttaat acatccaaac acacatccac      5160
     tggcttcacg ccctatttta tcacgcacgg cactgaatta tccgaaacgg gaaatgacca      5220
     tcgtctctca cgtcatcatc aggagacctc tgaaggtgaa cgcgaggagc aacgtaaaca      5280
     aaacttcaca aaaatatatg atattgtcaa aaacaacttg aacaaagcac acgaatcatc      5340
     caccaagcac tataatttgc ggagtcggcg attttccaaa gctttctccg tcggtcaact      5400
     tgtgtaccgg aaaaatatga agccttccag cgctgtagag aactacaacg caaaatacgg      5460
     tcagcagtat cttccctgca aggtgaaggc caaggtcgga tcctcatcat atgacctcga      5520
     agatctgaca ggcaagccac tcggaatttg gccggcgatt catttaaagc ccggttagtt      5580
     caattaaaac aactgtcgga tcctcctctt tatttttcca aacttgtctc tgccaatgta      5640
     cctgaaaata aacaaaaaca aatgaaactt acacccgcac atacgtttgt cgatatcgat      5700
     tcgtatcacc gttagtttat gatgaaaccc gtgcagcaaa ccgtgaaatc gtgcaaaaat      5760
     atcacgaatc attcactttt acttgcatcc atccaaaatg taaacacgct ttgacgtttc      5820
     acacccacac aagagccttt ttcattcgag tcgacatgcg cagggtagag cagaaggctt      5880
     tgcgataccc aggtggtcga ttttatagtc actaaaaact cctctcatgt tgcttgcaat      5940
     atgttctcgc atgcgagaac gggaaataag cagcatcgag agtgattcat taaatttagg      6000
     tttcaaaatc acccgttctc ttgaaataag agcagcgagt gtgagcatcg aaacaattat      6060
     agaattaggg cgccctagaa tcataaaaaa aacatcataa ttagtaaatt tggtccaaga      6120
     gttttcttga gacatgttac cgaaaaagag aagtaattcg taaatttatt ctcattagca      6180
     taactaagta gtcataaaat tatttggtca acaaaggttg atatggttaa aaaaaggtct      6240
     ttttaatagt gggaaagtga atggcaattc gataactttg tgcacgatcc atggttttgc      6300
     gtcttatggc atttcaaaaa ctgcatattt tgttgtacct aattaaaata cttcgggaca      6360
     aatcacctgt ccagatccag cgacaaagaa tgactcatac tgttgatagt gagcctcact      6420
     aactgaaatt caaataattt agaggaaaag cacttgacgt ttaggaacaa tcattgctct      6480
     aaattactcg gaatttcagc aagcagagaa ctacaatagt ataagtcgtt cgtagttgac      6540
     gaaatctcga cacgcagatc cctcttaatc gtattgatta caatgatgaa cggattcaac      6600
     tactagtgag cctcactatt caaaattcaa ataatttaga ggaaaagcac ttgacgtcta      6660
     ggaacaatca ttgctctaaa ttacactgaa tttcaaatag cagagagcta gtaatcgaaa      6720
     ttggtctcat agttaatcaa tttttctgat atttaagata gatttggaac tcatggtaac      6780
     tcgcgatcta agctaaatga aatgaaggct aggatttttg tccaagcagg ctcactcttg      6840
     gtaattcaaa tgatttgcag gaaaagcact tgacgttcag gaacaatcat tgctgcaaat      6900
     caatatggat tagtaagaga agataacttt gttaaaaatc aacagccttc gaatcccatt      6960
     gatagcttga cgttaggaac cagaatttcg tgagtttcga tatcgaaaag aacaccacat      7020
     cacgcaacag ccagcctcac tcttccaatt ttgcatgatc cctcggaaca gcacttgccg      7080
     cattaggaac aatcattgcg aaggatcagt taaaatttga agagcagaga actgttttgc      7140
     gaccattcaa ttcagacatc actggaattc gatagttgaa tcaggaaacc gaataagagc      7200
     attctgatag aagcaggctt actcttagag attaaagtga ttttgcgaaa aagaattgcc      7260
     gtttaggatc aatcatttct ctaaatcaat gtaaatcttt aagaggagag aacttgtact      7320
     agaatattgt tctgtaaact gaattttaga atattgctat tcctaacaaa aaaaaaactt      7380
     tgtttttttt cacccggtcc gggataat                                         7408
//
ID   Gypsy-351_AA-LTR repbase;    DNA;    INV; 1102 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-351_;
KW   Gypsy-351_AA-I; Gypsy-351_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1102
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1102
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 211-211 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1102 BP; 326 A; 231 C; 189 G; 352 T; 4 other;
     tgttacctct gagataggtc ccaatattaa ttttcttctt tttcttatgt aaatatttat        60
     tctttgttta tattttgtct ttttcttgta aatacatgta aataattatc cccttactat       120
     aaaakttgta aatacttgta tataactatt cccttactat aaaatatgaa atctgtaaat       180
     aaaatttgaa ttcaaattcc ctcccataaa accctacatc gtcattcctt cctccttgca       240
     ctaaaataac atggcgcgca ttaccaactg cgcaaaaaca aaccgctccc gggaaatgtt       300
     ccgcggacac agattttgca gcatcatgaa attgcttaaa agccaatgtt ggwgaaggca       360
     aaggcctctt ttcggtaaca aagttcaaat cgttaaaacc ttaagttgat ttaaagaaag       420
     ttaatcctct tcgcaggaac aaagtttcaa gtgttgtgcg acgcgagtgg tccaaagtta       480
     cagccctcgc ggggttttga ccagtgataa ttgtaccgat taatcagccc tggaacgtac       540
     cgacgaaacc gcctaccacc cctcaaccgt tcgcgacgaa aggccgttcg ctacccctcg       600
     cccgtcaaga agtgcgcccg gtgcccagct cgagtcgaca ttgaatcggg tcatcacgga       660
     gtgttcgaac ggcgattcgt ccgacaagac ccccagcagt tggcaaccgg caaatgatcc       720
     gccatccggc gccaggtgat gtgcagtgca aaaaatccca aataacccta ttcccatttc       780
     ccgtaaatta ctaaataaac taaacaaatg aattcgaatt ttataatctt tagagtgtaa       840
     ttatttattt tgctacgatt cccttatttt ctttcttttg ttgtgtgaat taaatttcgt       900
     tgaattagtg tgggaagtga gtccgcccag aagataaccg attctcccgg atagaccctg       960
     agagggatta aatgtaaata atcatataaa tttcttagtg ttaatttttt atttagtgta      1020
     atttttattt gatctttttt cttagttttw ttaatttaaw ttgaatttga aaagtaagtg      1080
     tgaattagac aaatgtctta ca                                               1102
//
ID   Gypsy-352_AA-I repbase;    DNA;    INV; 5463 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-352_;
KW   Gypsy-352_AA-I; Gypsy-352_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5463
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5463
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..1496
FT                 /product="Gypsy-352_AA-I_1p"
FT                 /translation="MFCYCYRTPSKKLILKELNEALKKNNALREQVASLSA
FT                 GFGSDLSPAPAVTGRSDGLLFSTMNSLSLGSLNIPECAPSEGQTEIDKQAF
FT                 EYWKDLLVSSLQLVSATDERMKYGVFKIKSGPKLREILNTTSSVPGMPDEK
FT                 TAPFSNALARLDGYYGSRAYTLTQRGKLMMMMQNGTETSIAFVRRVTAAAK
FT                 LCGYGADEEMEAVVRVVTQRANDARVRTLANRNWLKQGTLKDLIDLIQDYE
FT                 IEKSSEEEFQKSQARRDLSLVAAVSHGNEEFRNQRPAFGPYGRGRGFSHTS
FT                 RGGGRGRSFSRGNNRFQSASNCWRCGSIYHRPSECFAMKKDCRVCRQYGHI
FT                 ARCCPSSQPSSSGEQRRPWKRRAEEEEPVVERKVAAIECTKTEVELDSKVH
FT                 NDDDLE"
FT   CDS           1901..4831
FT                 /product="Gypsy-352_AA-I_2p"
FT                 /translation="MIEPIKVIANFSAELFISHDRPVTVEKFYVVDEFKAL
FT                 LGLSTAIRYSVLDIGLDVPIRHHEQKLFHQTTYYAQTISVEDEFPKFNIPP
FT                 VTLKYDADMPPARNVYTHIPKVFKELTNQKLKYLLSSGIIEEVTMDMDRSF
FT                 CSSLLVVPKGKNDIRLVIDLRGPNRCIYRTPFKMPTLESILMELHGAQWFS
FT                 TIDLTNAFFHIELDESSRHLTNFFAGDGLYRYRRLPFGLTNAPDIFQETLQ
FT                 TVVLAGCKGQINYLDDVLIFGRNKKEHDENLEKVMQCLENHNVRINEAKCK
FT                 FGKQSVDFLGFVVSADGWKIEDEKISALRNFRHPESIAEVKSFLGLVNFVG
FT                 KFIPNRADKTLKLREVAKADRFYWSQELDDEFEFLKNEAWDTITLGYFCRE
FT                 DRTELFVDASPFGLGAVLVQFDSESKPRVIACASKALSATEQKYPQTQKEA
FT                 LAMVWGVERFSVYLTSIFFTIRTDAESNEFIFGGLHRIGKRAVTRAESWAL
FT                 RLQPYNFCVKRIPGESNVADAPSRLVKQNQQAKSFDEEADTNHLLYFIDAG
FT                 TIEISWDEIEEQSDKDIELEKVRTSIQTGHWEHGLGRYESQAKELSVFGSS
FT                 IFRSDKIVLPEVLRRKAIESAHQGHMGIGSTKRILREHFWWPGMSSAVESF
FT                 IKGCETCLLLSKKNPPIPLINRELPHGPWEIIQIDFFTDKEFGFGEFLVIV
FT                 DTYSRYLHVIEMKHMNAESTIEALQKIFVEWGYPLVIQSDNGPPFQSDRFV
FT                 KTWENRGIKIRKSIPLSPQSNGAVERQNEGIKRALGASKLDGVNWKQALNK
FT                 YVHMHNKVRPLSRLGVTPFELLVGWKFRGTFPGLWKVDSSQELDREDIKEK
FT                 DAYSKLESKKHADFRRNAKESDLSVGDKVILTQVKRNKSDPPFNPEKYTIV
FT                 ARDGAKIVVKSSRGVIYSRNVADAKRAVEDYDSHEKEFSDNLQNFAGGSQE
FT                 VGKIIKYNNLFKTCYLSLWFSR"
XX
SQ   Sequence 5463 BP; 1801 A; 1018 C; 1229 G; 1415 T; 0 other;
     gtggcgcagc gttcaccgga ccgctggctc ccacaaagta agtaatcttt atgtatagac        60
     tctgctggaa atagacagaa gtctagtgca gattattttg aaattcggtg gagatagacg       120
     aatttcagta aaatatcaga ctccggtgga aatagacgga ggtctaatga aggatatttt       180
     gaaattcggt ggagatagac gaatttcaac aataataata ataataataa taaattagcc       240
     tccggtggag atagacggag tgctgataat atctttgaaa ttattgggct aacgctatgt       300
     tttgctattg ttacagaacg ccctcgaaaa agcttattct caaggaactg aatgaagcac       360
     tcaagaagaa caatgcactt cgcgagcagg tggcaagttt atcagcaggc ttcggcagtg       420
     atctgtctcc agctccggct gtcaccggtc gttcggacgg actgctattt tcgacaatga       480
     atagcttgtc gttgggttca ctcaacatac cagaatgcgc accatcggaa gggcaaaccg       540
     agatagacaa acaagctttc gagtactgga aggatttgct tgtttcgtca ctacagcttg       600
     tcagtgctac agatgagagg atgaaatacg gagtattcaa gataaaatct ggccccaagc       660
     tacgcgaaat actaaacaca acttcttctg tacctgggat gccggatgag aaaactgctc       720
     cattctcaaa tgcattggct cgacttgatg gatattatgg atccagagct tacacattga       780
     cccaacgagg caaactgatg atgatgatgc agaatggaac agaaactagt attgcgtttg       840
     tgcgacgagt gactgctgca gctaaactat gtggttacgg agcagatgaa gaaatggaag       900
     ctgttgtgcg agttgttacc caaagagcaa acgatgcgag agttcggacc ctggccaaca       960
     gaaattggct gaagcaaggt accttgaagg acctgatcga tctgatccag gattacgaaa      1020
     ttgaaaaatc aagcgaagaa gaatttcaga agagtcaagc tcgaagagat ttatctttgg      1080
     tcgcagcagt gtcccacggc aatgaggaat ttcgcaacca acggcccgcg ttcggcccat      1140
     acggaagagg aagaggattt tcgcacacaa gccgaggtgg cggaagagga cgaagctttt      1200
     cgagaggcaa caatcgtttt caatccgctt ctaattgttg gaggtgcgga agcatttatc      1260
     atcgaccatc tgaatgtttc gcgatgaaga aagactgtag agtttgtcgg caatacggtc      1320
     atattgctcg ttgctgtcca tcgagtcaac caagctcctc aggggaacag agaaggccct      1380
     ggaagcgtcg cgccgaagaa gaggaacctg ttgtagagag aaaggttgca gccatcgagt      1440
     gtacgaaaac tgaagttgaa ttggactcga aggtacataa cgatgatgat ctggagtaaa      1500
     tccttacctt aaatattctt atttgaatta acatttataa aacaaaagag ttgaatttga      1560
     aaaaaaaaag taaaataaat cattgaattc gcaaagaaat gaaaaacaaa tattgttata      1620
     acatttgtgt attattttac agaaaaaaat cgattcacaa gtcgccgaat ctgataaact      1680
     ccagctgaat catgtcgtgc cgggttgtat acccgctata ccaaatgcaa cgatcaaagc      1740
     aaaaattgcg ggagttgaaa tcacatttct gatagattcc ggtgctcaag tcaacaccat      1800
     aacaaaagca tcgtttgata agattttggc tgatgagagc acggcatctc aaatccttgg      1860
     tttaaagtcc tcttctgaca caccgttgaa agcatatgca atgatagaac caatcaaggt      1920
     cattgccaat ttttccgctg aattgtttat atcgcacgat aggccagtga ctgtagaaaa      1980
     gttttacgtc gtggatgagt tcaaagcact tctgggactt agcacggcaa tcagatactc      2040
     tgtccttgac attggtttag atgtaccaat acgacaccat gaacaaaagc ttttccatca      2100
     aaccacatac tacgctcaaa cgatctcggt tgaagacgag tttccaaagt tcaacattcc      2160
     accagtaacg ctaaaatatg atgctgatat gccacctgcc cgcaatgtgt acacccacat      2220
     tccaaaagtg tttaaagaac taacgaacca gaagctcaag tatctgctat caagtggtat      2280
     tattgaagag gtcactatgg acatggatcg ttctttctgt tcctcacttt tggtggttcc      2340
     aaaaggaaag aatgacattc gacttgttat cgacctacgt ggccctaata gatgcattta      2400
     ccgaacaccc ttcaaaatgc ccacgctaga gtctatacta atggaacttc atggtgccca      2460
     atggttttca acaattgatt tgacaaacgc atttttccat attgaattgg atgaaagctc      2520
     tcgtcattta acgaatttct tcgccggaga tgggctttat cgttatcgta ggcttccatt      2580
     tggattgaca aatgctcctg atatttttca agagaccctt caaacggtgg tactggcagg      2640
     atgcaaagga cagatcaatt acttggatga tgtattaatt ttcggcagaa ataagaaaga      2700
     acacgatgaa aacctggaga aggtgatgca gtgcttggaa aatcataatg tcagaataaa      2760
     tgaggcaaaa tgcaaatttg gaaagcagtc ggtcgacttt ctaggatttg tggtgtctgc      2820
     tgatggatgg aaaatcgaag atgagaagat ttcagccttg cgaaacttta ggcatccaga      2880
     atcaatagca gaagtgaaaa gttttttggg attggtgaat tttgtcggga aattcatccc      2940
     gaacagagcg gataaaacgt taaaactccg cgaagtagcg aaagctgata gattctactg      3000
     gagtcaagaa ttggatgacg aattcgagtt cctgaaaaac gaagcatggg acaccataac      3060
     gctgggatat ttctgtagag aagatcgcac tgaattattc gtggatgctt ctccctttgg      3120
     tttgggtgcg gtgctagttc aatttgactc tgagtctaaa ccacgagtga tagcctgtgc      3180
     ctcgaaagct ttatctgcta cagaacagaa atatccccaa acccaaaaag aagccttggc      3240
     gatggtctgg ggagttgaga gattctctgt ttatctcact agcatattct ttacaatcag      3300
     aacggatgcc gaatccaatg aatttatttt tggaggcttg cacagaattg gaaaaagagc      3360
     agtgacgaga gcagagtcat gggccttgcg gttacagccg tacaacttct gtgtcaagag      3420
     aattcccgga gaatcgaatg tagcagatgc cccatccaga ttggtaaaac aaaaccaaca      3480
     agccaaatcg ttcgatgaag aagccgatac caaccatctg ctctacttca ttgatgctgg      3540
     tactatagaa atttcatggg acgagatcga agaacaatca gataaggaca ttgaactaga      3600
     aaaagtaaga acttccattc aaacaggaca ctgggagcat gggttgggcc gatatgaatc      3660
     acaagctaag gaacttagtg tttttggaag ctcgattttc agaagcgaca agattgttct      3720
     gcctgaagta ctacgaagga aagctattga atcggctcat cagggtcata tgggcattgg      3780
     ttcaacgaag agaattttgc gagaacattt ttggtggcca ggaatgagtt cagcagtaga      3840
     atcattcatt aagggctgtg aaacatgcct attattgtcg aaaaagaacc cacctatccc      3900
     actaatcaat agagagcttc cccatggtcc ctgggagatc attcaaattg acttctttac      3960
     cgacaaagaa tttggttttg gagaattcct tgtaattgtg gatacttact cgcgctatct      4020
     gcatgtaata gaaatgaaac acatgaatgc tgaatctact attgaggctt tgcagaagat      4080
     ctttgtcgaa tggggttatc ctttggtgat ccaaagcgat aacggccctc ccttccagag      4140
     tgacagattc gtcaaaacct gggaaaatag aggtattaag attcgcaaat caattcctct      4200
     aagcccgcaa tcgaacggag cggtggaaag gcaaaatgaa ggaataaagc gtgctttggg      4260
     agcatctaaa ctggatggtg taaattggaa acaggccttg aataaatacg tgcacatgca      4320
     taacaaagtt cgaccacttt ctcgattggg agtaactcca ttcgagttgt tagtcggctg      4380
     gaaattcagg ggaacattcc ctggattatg gaaagttgac tcatcacaag aactcgaccg      4440
     agaagatatc aaggaaaagg acgcgtattc aaaactcgaa agcaagaagc atgccgattt      4500
     tcgaagaaat gcgaaagaat ctgacctctc cgttggtgac aaagtaatct taacacaagt      4560
     caagcgtaat aaatcagatc cacctttcaa ccctgaaaag tacacgatag tagcccgaga      4620
     tggagcaaaa attgttgtga aaagtagccg aggggttata tattcaagga atgtagcaga      4680
     tgcgaagaga gccgtcgaag attacgatag tcacgagaag gaattttctg ataatcttca      4740
     aaattttgct ggtggatcgc aggaagttgg taagataata aagtataata atttgttcaa      4800
     aacatgttat ctatctcttt ggttttcaag atgatcgcaa cacggatgat gcaggaaaac      4860
     acaatgtaac tcaaagcgaa ggatcgccga agcagcgggc cgattcaaat attcccgaag      4920
     ctgtagataa cggtgagata cgtaataata attcattact taaaagtact tagttgcatt      4980
     ttattcaaca gaaatatctt cgaactcgga aaggactgcg cgtcaaccca acaatggaaa      5040
     ttttgtactg ccgcggccgc aacgagatag gaggctacca cataagctga aagatatggt      5100
     cttgtacaac atctacggtt gaataactaa gctacggttt tgatttaaaa atatatatat      5160
     atgaaatttt ctagcaaatg tttgtagcaa tacaacagta attaaacttg ttatactacg      5220
     tcaaaaaaaa tcggagaaga tttatgtata atcagtagta ctcaattaaa ctttcattca      5280
     ctaacataat aaatacatta ttcgtcgaaa taaatagaag aagagtataa tacgacaagt      5340
     aaaaaaaaaa aaacaaacat caaataacag attctaatgt ttagtattga agattgatac      5400
     tggtatataa aagtaaaatt taaactagta attttcacta atagagagta gaggtgagag      5460
     gga                                                                    5463
//
ID   Gypsy-352_AA-LTR repbase;    DNA;    INV; 1807 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-352_;
KW   Gypsy-352_AA-I; Gypsy-352_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1807
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1807
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 234-234 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus. This LTR contains internal
CC   tandem repeat which could mess up the blast result.
XX
SQ   Sequence 1807 BP; 521 A; 435 C; 455 G; 396 T; 0 other;
     ttgtagtagt tgagattggg aatttgatgt acgaaaaaat aataaatgaa taaaataaat        60
     aaattgttga tttcaattat acaactttgt tcagaaaata tcggaaagaa aaagaacctt       120
     tatcgttaaa atgagcacat agaatgaata aaatgatatc atgagtgcgg aaacaattat       180
     aatttacatg ccgatacgta taacaatgcg atacacgcca cattcttaca gcatcaaatg       240
     actgggcgga tacaaacaaa gcaggctcct ctttgtataa ataggggtac actaaacgtt       300
     ctggcgtcat tcgtgaaacg gacgcagaac gcgcaacaac cggagcagcc gaaaaggaat       360
     agcaataata gcagcgagat cttgagttgc gactcgctgc tatttcatcc aacgcaaacc       420
     tgggccgagg cttgaattga gcgcccctcc accttccctt ggtggtggat aaatagcagt       480
     gcgtggagcg ttttcctttc attcgtgaaa cggacgcaga acgcgcaaca accggagcag       540
     ccgaaaagga atagcaataa tagcagcgag atcttgagtt gcgactcgct gctatttcat       600
     ccaacgcaaa cctgggccga ggcttgaatt gagcgcccct ccaccttccc ttggtggtgg       660
     ataaatagca gtgcgtggag cgttttcctt tcattcgtga aacggacgca gaacgcgcaa       720
     caaccggagc agccgaaaag gaatagcaat aatagcagcg agatcttgag ttgcgactcg       780
     ctgctatttc atccaacgca aacctgggcc gaggcttgaa ttgagcgccc ctccaccttc       840
     ccttggtggt ggataaatag cagtgcgtgg agcgttttcc tttcattcgt gaaacggacg       900
     cagaacgcgc aacaaccgga gcagccgaaa aggaatagca ataatagcag cgagatcttg       960
     agttgcgact cgctgctatt tcatccaacg caaacctggg ccgaggcttg aattgagcgc      1020
     ccctccacct tcccttggtg gtggataaat agcagtgcgt ggagcgtttt cctttcattc      1080
     gtgaaacgga cgcagaacgc gcaacaaccg gagcagccga aaaggaatag caataatagc      1140
     agcgagatct tgagttgcga ctcgctgcta tttcatccaa cgcaaacctg ggccgaggct      1200
     caaattgagc gcccctccac cttcccttgg tggtggataa atagcagtgc gtggagcgtt      1260
     ttccttgcat tcgtgaaacg gacgcagaac gcgcaacaac cggagcagcc gaaaaggaat      1320
     agcaataata gcagcgagat cttgagttgc gactcgctgc tatttcatcc aacgcaaacc      1380
     tgggccgagg cttgaattga gcgcccctcc accttccctt ggtggtggat aaatagcagt      1440
     gcgtggagcg ttttcctttc attcgtgaaa cggacgcaga acgcgcaaca accggagcag      1500
     ccgaaaagga atagcaataa tagcagctca aattgagcgc ccctccacct tcccttggtg      1560
     gtggataaat agcagtgcgt ggagcgtttt cctttcattc gtgaaacgga cgcagaacgc      1620
     gcaacaaccg gagcagccga aaaggaatag caataatagc agcgagatct tgagttgcga      1680
     ctcgctgcta tttcatccaa cgcaaacctg ggtcgaggct cgaattgagc gcccatccgt      1740
     cgttgcgtat caattcgcag cggccgtgtg cagcaaacga tggattcttc agatgacggt      1800
     cgcgaca                                                                1807
//
ID   Gypsy-353_AA-I repbase;    DNA;    INV; 4930 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-353_;
KW   Gypsy-353_AA-I; Gypsy-353_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4930
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4930
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4930 BP; 1546 A; 980 C; 1192 G; 1212 T; 0 other;
     atggcgcagc tggtagtagc agaactaagg cgtctccctc tcggtaagta tctgaaatga        60
     agtcacaagg atctgtagtc gaggcagttt cctttgtgtt gaatgggagc tctggtagtc       120
     gagacagagt atccaatact agaagcatta gtactctgat agtcgaggca gagtaactaa       180
     atatgcgctt ttctgttttg acaggaaatc gaaaacaaag gttacgagaa agatgcttct       240
     ggaagaattg gcggccatca aaaccgagct tgccaccgcg agactcgaga acgagcagtt       300
     gattcatggc tcgggagcga aggttgcagg aagtgatgtg aacttcagac ccagtgaaga       360
     tctggatgat cgatcgacgt catcgggaag cgggtctatg ttgaccacca tgagcaacat       420
     gtcgcttggt gccttaaaca tccctgaatg caaaccatca gatggtgaga cggatataga       480
     caaaaaggcc tatgaacact ggaaggaaat cctgaatgca tccttcaacc tggtaagagc       540
     agctgatgag cgtgctaaga tggatatatt caggatcaag gctggctcaa aattactgga       600
     ggtgatgcaa ggaacctcat ccacaccgaa tatgccagat gagtgtgtct atccttactc       660
     caatgctatc gcgcggctag ataattactt tggatccaga acctacatta tcggtcaacg       720
     gagtaaattg atgaatacag tacaacaaaa agacgaatcc agcgtatcgt ttgtcaggcg       780
     tgttgcagct gccgcaaaat tatgcggcta caagaacgat gaggaaatgg aagccgtagt       840
     tcgtactatt gtcaagggaa cttccgacag ccgtgttcga gtattggcac atcgaaactg       900
     ggttaaccaa ggtgatatga acagcctcat tgcactggta cgtgatcgag aaatggaaat       960
     cttcaatgaa caggaatatc aaaagttcaa ccgaccaagt tgctcgccga tagctgcagt      1020
     gatggatcaa acagagtcac gaacaccaag tcgtcgcggt tttggatcca ggttcagcag      1080
     cacccagcga ggtcgaggaa cattccgacg tggacacgca caataccaag gaacatctcg      1140
     gagtgcttgt tggcggtgtg ccagcttgta tcatgaacca tcggcctgcc ctaatattga      1200
     caaggtatgt cacaattgca agcgtcgtgg gcacctggcc cgctcttgcg caagcgtacc      1260
     taagtttgca ccggggcaaa agcgttcggc tatcgaacca ggagaggacg aaccacgacc      1320
     aaaagttgca gcgatcaaac aaaatggtga agagaatatc gataaggttc aacacgcatc      1380
     tatagacaat cttccgaacg aagagagctg tactgagcag gttatttgtg caatccccac      1440
     tgttaatctg ccgacggaag aagatgcctt tgttgttggg catgtagcag gagtccgtgt      1500
     aatttttttc attgactcgg gtgcccaagt aaataccatc accaggaata ctttcgataa      1560
     aatgcttcgc gatgaatcaa ggatgaagaa actggttgat ttaagttact catcagataa      1620
     aacgttgcgt gcgtatgctt cgcacggcga gatcagcgta tttgcaactt tttcagcgaa      1680
     actccatgta tctaaggata gaccggtgta tttagagaaa ttctacgtcg ttaatgaaac      1740
     aagatcatta atgagcttcg gcacagcagc tcgatacagt ctcctagatg tgggctttcg      1800
     ggttcctgtt ggtggatatg ggaacgtctg gaaatgtgaa ttcgcaatgg tgaacaatat      1860
     tctgagcaca agtgtagagc aatttcctta atttaatgta ccaccggtgc tgctacatta      1920
     caacaaggaa atggctccgg ccagaaatgt gtacacacac ataccaccag gatttaaaaa      1980
     tttagtacaa caaaagctaa gtgagctttt gctatccggg atcatagaac cagtaacaga      2040
     tgcgatggat cgctccttct gttcgtcttt gttggtggtg ccaaaaggta aagatgacgt      2100
     tcgcttggtt gtcgacctta gaggcccaaa caaatgcatt catcgaactc ccttcaagat      2160
     gccaaccttc gaagaaatcc tgatgcagtt gcacggagca aaatggtttt caaccataga      2220
     cctcaagaat gcgttttttc acgtggaact tgatgaacgc tgccgccatt tgacaatttt      2280
     tttctctggc gatggattat ataggtgtcg acgacttcca ttcggcttat gtaacgcacc      2340
     ggatatattc caggaaacga tgcagtctgt aattctctct ggatgtaaag ccacagttaa      2400
     ttatttagac gacatacttg tttttggaat gacaaaagag gagcatgatg caaaccttaa      2460
     ggaagtgatg aagcgattag aagaccacaa cgttaaaatc aatcaaagta aatgcttgat      2520
     aagacaggaa gaagttccat tcctaggctt tcatctgtct ggtgaaggat ggagtgtgga      2580
     agaggagaaa attcggtcca tacggaattt ccggagacca gagagccaag atgaagtcag      2640
     aagctttatg ggtttaatca attacattga tcgatttatc cttaatcgag cagaccgaac      2700
     atggcgattg agagagctgg cacggtctga tcacttctat tggtctgagg agttggacca      2760
     ggaatttgaa ttccttacat cgtctgcctg gacaaagatc aaaactctag gctactacag      2820
     tcaaactgac gagacggaac tttatgttga tgcttcgcct cacggactag gagccgtttt      2880
     agtccaaatc gataaggaca gtaagcctag agttattgcg tgtgcatcaa aagcattgtc      2940
     tcctactgaa caaaagtacc cccacaccca aaaggaagct ttggccatgg tgtggggggt      3000
     ggaaagattc tccaattatc tgttgaacac tatgttcaaa attcgctcag atgcaaaatc      3060
     aaacgagttt atttttggag gaatgcatcg gattggtaaa agggcgatat cacgagcaga      3120
     agcgtgggca ttaaggctgc aacaatataa tttcacagtt gtgagtattc cggggaatac      3180
     aaatattgca gatgcgttgt ctaggctggt gattgaaaca aaaccaatcg cggatttcga      3240
     tgattctact gaagatcatt tgctgtttgc cttggatgct ggaagtatgg agataaactg      3300
     gaacgagatt gaattggaag ccgaaatcga taaagtgcag attggagttc gagagtccct      3360
     gaaatctgga aaatggagta aacagctgca agcgtacgaa tgtcacgcta agtatttgcg      3420
     gctttttggt gccttaatat ttaaagaaga tcgagttgta cttcctgaaa atttgcgaga      3480
     taaagcaatt aaactagctc accaaggcca tgtaggagcg gcttctatga aaagaatact      3540
     aaggaaccat ttttggtggc caggtatgaa tgaccaagtt ctgaaatatt tggatagttg      3600
     cgaaacatgc ctaaggcttt caaagaaaaa tgccccgctt ccacttacta gccgagaact      3660
     ccctgaggga ccatgggaag tgttgcagat ggattttttc acggacaagg atttcggcct      3720
     tggagaattt cttgtagtag tggatactta ttcacggtac atccatgtgg tcgagattaa      3780
     aaacattgat gccgacacca ctaatgctgc tcttgcaaag atattcgaag tttggggata      3840
     ccccttgaca atccacagcg ataatggacc tccatttcag tctgacaagt ttgtcaagac      3900
     atgggaagca agaggcatca aagtgcgaaa gtccattcca ttaagtgccc agtccaacgg      3960
     tgctgtcgaa agacaaaaca gcgggataaa gaaaaccttg gcagcagccc gattggataa      4020
     agtaaattgg agaactgctc ttgaacagta tgttcacaca cacaataaag ttcgaccgtt      4080
     gtctcggctg ggagtgaccc ccttcgaatt gttagtggga tggaaatggc gtggaacctt      4140
     cccttgtcta tgggatgctt acgattcgga ttcactagac cggaatgaca ttcaagaaaa      4200
     ggatgcagta accaaattaa agagcaaaca gtatgctgac acgcgacgag gggcaaagga      4260
     ttctaatata aaagttggag gtacagtcat gatagcggta caaaagaagc aaaaatcgga      4320
     tcctaccttc tccgctgata ggttcatcgt aatagcgaga gacggtgcta aagtcgtcat      4380
     ccgtagtgag aggggcgtcc aatattctcg taacgtccaa gatgttaaga aactgccaga      4440
     atgcctgata gagccatcac gtgatatcca cgaaaaaatg gaagaagtag aagaaaccgt      4500
     gcagcccgga attgattcac ccgaaaactt accaggtgtt gatctggatc attccacaac      4560
     taagatcgac gataacattc aacgcccaag aagaataacg aagaagccga acagattcaa      4620
     agacatgata ctattcagca tttttgagta gtttgaggaa cacaatgtac accacacagt      4680
     gcaaccgctg gcccattctc gagatcacat tcaaggattc attctgtata acggtacaat      4740
     gatgtttact agaaacagca aaaaaaaatg atatgatatt gaagtagaaa gactaacaga      4800
     tttgctaacc ataatttgaa caataaatat atttcgaaca aacaaagtgg taaaaaaaac      4860
     aataaagtga gaaaggtgtt taacaagcat aagaagagaa tatagcgcag agagtagaag      4920
     cgagaagtat                                                             4930
//
ID   Gypsy-353_AA-LTR repbase;    DNA;    INV; 1017 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-353_;
KW   Gypsy-353_AA-I; Gypsy-353_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1017
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1017
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 212-212 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1017 BP; 338 A; 216 C; 246 G; 216 T; 1 other;
     tgtagagaag aaacttgtca tggataaatc attaaaataa acgccattaa aatatcctga        60
     gttgtgactt tgaatcaatt tataaatcag taattagaaa aatatcactt tccccttgtt       120
     ctgttcgggt ttacttgttg actacggtat tccttcgttt ccatcatgag agaaaatcga       180
     aaaggcggag cctaccatat tcgatgacac agcaccgttg ttcaattata aaaccgacag       240
     tgccatcaca gtgtggctca ttcaagtgac gaacggcaag acgaacggac cggaatcgag       300
     cggagcagca aaagcgatcg gtwataaaac cgacagtgcc atcacagtgt ggctcattca       360
     agtgacgaac ggcaagacga acggaccgga atcgagcgga gcagcaaaaa gcgatcggtt       420
     ataaaaccga cagtgccatc acagtgtggc tcattcaagt gacgaacggc aagacgaacg       480
     gaccggaatc gagcggagca gcgaaagcga tcggtaataa aaccgacagt gccatcacag       540
     tgtggctcat tcaagtgacg aacggcaaga cgaacggacc ggaatcgagc ggagcagcaa       600
     aaagcgatcg gttataaaac cgacagtgcc atcacagtgt ggctcattca agtgacgaac       660
     ggaccggaat cgagcggagc agcaaagcag tgccattaca gtgtggccca tccaagtgac       720
     gaacggatca cgtgttagca gcagcagtga ttgactctaa agtcgattgc accttgctgt       780
     agtgtttatc tgaagaggta aaccatgagt tgttagaaat attcatgagt tgttagaaat       840
     aatattccac acacgagttg cttagaaaat attatttgct gaagagttgc taaaacaaaa       900
     aaaaaaatat tccaacagct actggcgaag tcatcaagtt tgtcaagatg gctaacaacg       960
     acgaacagca ggcttccttg ttgccacggt ccaggaacgc agccggaaat tacgaca         1017
//
ID   Gypsy-354_AA-I repbase;    DNA;    INV; 7850 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-354_;
KW   Gypsy-354_AA-I; Gypsy-354_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7850
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7850
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7850 BP; 2575 A; 1411 C; 1697 G; 2167 T; 0 other;
     ttggcgcagc cggtagcgct gtgggatcat cgaaggtgta agtataatac agttgagcgg        60
     aaaatgataa agaattgacg aagaataaca gatgcagtga tggaaaatga ttgattattg       120
     ccatggatga gaaaaaaaaa taaatgttca agacaaaata ttcgcaaatg aaaaaataat       180
     tgatttgcca gaaaaaaaag tataattgca aagaaaaaat aaatggaatc agaatataca       240
     tctggattaa aattggatgg aaaaaataaa tgtattgcag taaaacgaat taagaataaa       300
     aaaaaaataa atgctcgaaa agaaagagaa aaaaaataaa tgctgagatt gagaaggaaa       360
     attcgtttga tttggaaaat gctctaaaaa atatgtgttg atgagaatca ttgaaacaaa       420
     tgagacaata tgaaaaaaat aaatgccaaa aaaaaaaaaa aaaattaacg atcaagaaac       480
     gtgagaagcc cagcagaaat ttaaaagcaa aagcagttga tcaagttaac agaaatatag       540
     gacggcgtat gatatttcta gacttaattg cgcaaaaaaa atgataaaaa aaaataaatg       600
     ggcttttttt tgtttccctc ttgcaggaaa atatcaaaga aaagattgtt aagggaattg       660
     aaagaggcag ttgacagaaa caatgttctt cgagaacagg tgacacgatt atcggtggat       720
     cagaggacca gcgaactagc tcatgtttgt gctagcacta tgagccaaga atcgcacgtc       780
     tccagaaacg attctgtaat tctatccaca atgagcagtt ggactttggg aactctcaac       840
     attcctgaat gcgtgccaag tgaaggagag tcggaaatag ataaaagagc atatgcgtat       900
     tggaaagaaa ctctaacggc ttcgttgcaa cttgtgcact cggctgatga gcaagcgaag       960
     tatggagtgt ttaaaatcaa agccggtgtg aaactgcgag aaatatttaa tactacagta      1020
     tcctcgtctg agatgcctaa cgagaaaaca cacccatttt cgaacgcatt ggctcggctg      1080
     gacgattatt tcgggtcaag gacgtacatg ctatctcaac gcggtaagat gatgaattta      1140
     tgccaggcgt caacagaaag tagtgtggag ttcgttagac gagtggcatc caccgcgaag      1200
     ctttgtaact atggagcaga tgaagagatg gaagctgtcg tccgtgtaat cactacgggt      1260
     gcaaacgata gtagagtccg aatacttgct cgcagaaact gggtgaagca agggtcgatg      1320
     aaagacctaa ttgatctggt tcgtgagcac gaactagaaa aggcaaacga ggaagaattt      1380
     cagaaagctc accaacgtaa cgagccagca gtcattgcta cagtttccag acgtccacag      1440
     gagctagagc gacaagaaag attccgtatg aactggagag gaaaaggagc agtacgtggt      1500
     ggccgtggct tcagacgggg aacaagagga tacaaccaag gaatgttgcg aaatcagagc      1560
     ggatctaatt gctggagatg tggtagtttc tcccaccgtt cattcgcttg tccagtggct      1620
     gacaaggtgt gtcacacttg tggtcgtgta ggtcacattg cccgtgtatg cacgtcatcg      1680
     aatcaacaaa ttcgagcccg gtcatggaag cggccttctg attctgaaga acgtgaggta      1740
     ccgaggaaaa ttgcagcgat cgagaacatg cccgaacaac cagacgtagt ctgcaaggta      1800
     caagaagctg acgataatcc agagtagatt ctagtgttag tactgataca ttctcattga      1860
     tgaactggca ttgtttttag ttcccttatg attgtttttt ttcttcattg actgaaattg      1920
     aattcgttgg cagtcaacca gatagctatc tctgcaacca tttatcgaaa aaaataaaaa      1980
     aagcaatttc aaatcgactc atagttttac attgatgaga atcgttatcg tacgcgttac      2040
     tgatacgatt ggagccaaat gattcgcttg taagctaaac cactctttcc cttgatgaca      2100
     aacgtaatct acagtttcta aacgacacga taaatttgaa atagggtagt ggtaccggtt      2160
     tttagccata ttgctgatcg tagccattgg gttcattcac aaatttgcta acgcaaaaag      2220
     aaaaaaaaac acgtatttgg cacccacctc cttgtaacgc atttagtatg aatgtttttc      2280
     gaattttgta tggactgtaa cttcttacat ttgtgaatag gcccatagtg gattatactc      2340
     cgttttttac ataacaaatc agaagcaaac attttgggat cacatgataa aactatattc      2400
     atttactcgt ccaaaataag aaaacataat tgtcattaaa aattgaactc caatacagca      2460
     gggtattcct aattggctat tctcgtaaaa aaataaataa tcgtgattga tatattgcga      2520
     gatatttgcg gtacatataa tgttccaata cataataaaa aaaaatgctc ttaaacttgc      2580
     ttaaaccgat gcttctaccc taactgtgat gtgtatacac acatgttaaa acattatttc      2640
     tctctgatag atgtggaggt acaaatacta tattttcatc aggataaatt aattccaaca      2700
     atatccttta gttgttgaaa tggccaatcg tcgtgcatgt tgtagatttc cagtcatttg      2760
     gctccaatgt tacacgtgaa gtaaccacta agaaggtata tctggaatat agaaaaataa      2820
     ttcaaattat tttcagaaat cattcaatga acaaaagcta gtacgttgtg gagtttctga      2880
     gaaaatcaac cagcaagtag acagcgtaca atcgcttttt ccagtttcgt tcgcagatgc      2940
     tattgtaacc ggtcgtgttg cagggattga aatactgttt atgatcgact caggtttgtt      3000
     aattgttgat ggtagtgaac aaattgctta tttatttttg gcattcaata caggtgctca      3060
     ggtgaacaca atcacgcgcg agtcttttga caaaattatg gtcgaccaga aagcttcatc      3120
     aaaaattttg actctgagct attctaccga caagccctta aaagcttatg cttctagcgg      3180
     tcacatagag gtagtggcca cattttcggc cgagctattt atatcagaag agcgaccgat      3240
     tatgattgaa aagttttacg ttgtcgacga aatgcgatcg ttactgggtt tcaacactgc      3300
     tataaggtac agcattctca acattggatt gaatgtaccc gtacgatatg atcaattgca      3360
     ttcgatccag agtgactcat acatagcaaa gattgagcaa gcgacacatt gtgaagaatt      3420
     ccccaaattc aatattcccc cagtaacatt gaaatacgac actagcaaac caccctcgcg      3480
     aaatgtatac acctatgttc cagtagcatt caaagaattg gtaaaacaga aactcaacga      3540
     gttgctaaca tcagggatta tagaggaagt gactcctgat atggacagat ctttttgctc      3600
     gtccttgctc gtagtaccta agggcaagga tgacatccga ctagtaatag atctgagagg      3660
     tcccaatcgc agtatccacc gaactccatt caaaatgcct acatttgaat ccattttgat      3720
     ggaactccat ggcgcgcaat ggttctcgac catagatctg aaaaacgcgt tttttcatat      3780
     cgagctggat gaaaattctc gccacctaac gaattttttt tcgggtgatg gagtataccg      3840
     atacaaaaga ctccctttcg gactctgcaa tgctcctgac atttttcagg aagttctaca      3900
     gacaatagtt cttgctggtt gcgaaggtca agtaaattac ttggatgaca taatgatctt      3960
     tggaaaaacg aaggcagagc atgacaaaaa cttggaaaac gtgttggctt gcttggaaaa      4020
     tcacaatgtg tacatcaaca aggagaaatg tatgtttagt cagcaggcgg ttccgttctt      4080
     aggattttcg gtatcatctg aaggttggaa actagaggac gaaaagatag ctgcacttca      4140
     aaatttcaga agtccagata ccattactga agttaagagc tttttagggc tcattaattt      4200
     catcgaaaag tttatcccga atcgagcaca aagaacatgg aagttacgag aattagctaa      4260
     gtcggaacag ttttactgga atgcagattt ggaggaagag ttcgagtatc taaaaaaaga      4320
     cgcgtggaag acgatcacaa cactgggtta ctacagcagg ttcgatgaaa cggagttgta      4380
     cgtggacgct tccccatatg gactaggagc agtactagtc cagtatgata aggaacgaaa      4440
     tccccgagta atagcctgtg cttccaaagc tctgactcct acagaacata agtaccccca      4500
     aacccagaaa gaagctctgg cgatggtctg gggcgttgaa aaattttcga tttacttgat      4560
     gagtgtgagc tttaccatca ggaccgatgc tgaggcgaat gaatttattt tcaatgggtc      4620
     acatcgaatt ggtcgtcgag cagtttcaag agcagagtcc tgggcgttaa gactgcagcc      4680
     atattcgttc aatgtaaaaa gagttcctgg taaatcaaac cttgccgatg ccctttccag      4740
     gttggtcaaa caaaacgttc ctgacaagtc ttttgatgag actgcagatg acagacatct      4800
     tctgtacttc cttgatacag gagcgatgga aatatcatgg aacgacatag aaatcctatc      4860
     cgaagacgat aaggaaatat tggaagttag aaaatcccta gaaactggac aatgggcacc      4920
     atatcttcgt aggtatgagc ttcaagcgaa ggatctcaga atgtgtggca gtattgtttt      4980
     cagaagtgag aaaattgttc ttcctgaagc actgcgacga aaggcaatcc aatcagctca      5040
     tcaaggacat atggggatat cttcaacaaa gcacataatg cgcgaatact tttggtggcc      5100
     agggatgagc gccgaaattg agtcatatgt gaaagcatgt gaaacgtgcc tgttgctgtc      5160
     caataagaac ccaccggttc cacttacgag cagagaactt cctcgtaacc catgggaaat      5220
     tttgcaaata gacttctaca ccgataaaga attcggcaac ggagagttct tagtcatagt      5280
     agatatatat tcccggtatc tacacgtagt agagatgagc aacatcaatg ccgaatctac      5340
     aaatgatgca ctgaacaagg tgtttaagat ttgggggtat ccgttagtca tacaaagtga      5400
     caacgggccc ccatttcaaa gcgacaagtt tattagaact tgggagaata ggggaataac      5460
     aatcaggaag tccatcccat tgagtcccca aagtaatgga tccattgagc ggcaaaacca      5520
     gggaatcaag aaaatcttag ccgcctccaa attggataac aagaactgga gattggagct      5580
     tgaaaaatat gtccataccc acaataaggt gcgacctctt tcgcggtttg gggttacacc      5640
     tttcgaactg ttagtcgggt ggaagcaccg aggcacattc ccatgcttgt gggacagaaa      5700
     atcaagtatc cagctggatc gggaggatat aagagagaga gatgcgttga caaaatatga      5760
     gagcaaactg tacgccgata tgaaaagagg agctaaggaa tcagatttac aggtcggcga      5820
     tagagttgtc ttgattcaaa ccaaacgatt caaatcagat cctaggtttg gcactgaaaa      5880
     gtttactatt acggctaggg acggtgcgaa gatcgttgtc cgcagcgacc aaggcgtaat      5940
     gtattcaagg aacattggag atgcaaagaa ggtttttgat agcttcgaga atattcctac      6000
     gacaactgat gaacactctt cagaagaaat ggatgacgac gcggaaaatg aggattttct      6060
     gaagaacaaa acctctgatg ttaggtgtag taagtatatt tacttttctt atgaaattat      6120
     gaaggcaaaa cttgggtttg cattattttt tttcgcagga aaatcagatg actcaggtgc      6180
     agaatgtgta cagcaatcac tggcacaaaa tacaaaaccg agatccaaac gagaaactaa      6240
     attgccgagc aagttcaagg atatgctgtt gtacaatgtg tatgaataaa aatttgtaca      6300
     aatgctggtt ttcaaatgca aatgaaaaaa acgaacaata caagatgtat ttagctaatc      6360
     gatgtgatac ttacttaatt atctgaagga aatcgagaaa catagtttgt ctgtggttta      6420
     catctatctt tggaatagtg tccacctttc gatgcttggg cccttcttga ttcgcattcg      6480
     ttgtgaccaa ctgcagaagc tgtccttcta ttttgtgttc ttcctcgaag ttctgctgca      6540
     ggaatgttcg aactgtggta gatccgctta attacatcct ttactggttt tgttgtcttc      6600
     atcgctggcc gttgcaatta ttatttaatt gcaaactaac gggaaggaaa cctagtgtag      6660
     aataatccgt acggtcggtg atcggtaatg tttgttttgg ttttgcacat cgtgtttgac      6720
     actttgatgg tgatcaggga ataagacgtt atgaagcgtt atgcacattc agctcagagt      6780
     acactatggg ccaacaaatg cacggaaaat tcaatattac acgataattg atttatatgg      6840
     aaatctagtt taatgcgtgg tatgcacctg aaacgtaaag cgctcaagta aaatttatct      6900
     tttttaccaa agtaattttt acagctgatc cagtatgagc gaagtgtcac ttttacttac      6960
     ggaataatta agcggcacat ttttctgtac ggaaaagtga cagctccatt tgatttgtgc      7020
     ggcaggcgtt accgatgtta tgaaatcagc tttacttctc agcagcgtac agcttaagta      7080
     atttcggtag cggaatcgtt ccctgatcgt ttcatgtcct ataattttgc acagtactta      7140
     tgatcagcgt accagccata agcgaagcac ggacttgtaa agaaaagcgt ttaaatgact      7200
     tttcttcaaa gcaattttaa tagctaatcc agtaggagcg gatttacttg cggaatgact      7260
     gaacggaaca ttttagattt tagataaagt gatagctcca tatgatttac gttacgaaat      7320
     cggctctaca tatcagctgc gtacgctgcg tacagctcaa gcagagacac agacgtcttt      7380
     gtctcaagta cacgaagtca caaatcaacc caagtttaac ttcttttgac tcaaatcgga      7440
     tcttccgttg gatagctcaa atttggcttg tctggcacat agctctcagt aagtaatttt      7500
     cgttaaacaa caatgatttt caaattagag tttaaagaac taattttttt gtgtagtctg      7560
     atttttttcc gaggatgaaa ataccgaaag gtagcaaaat cactccttga gcattttttt      7620
     taacctatcc ttggcacagt acttatgaat agcatcgtac tacgcttatg aatagcgtat      7680
     tcattagagg aattagaatt aaattttgga cagtgtcgat ctatatttag agtctgttca      7740
     atagattcac aacatttcga ataagtttaa agattttcaa aattattgtt tattttttgt      7800
     tacgtttatg ctatgtacga attttcatca agagtagagg agggagtgat                 7850
//
ID   Gypsy-354_AA-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-354_;
KW   Gypsy-354_AA-I; Gypsy-354_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-462
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-462
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 213-213 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 462 BP; 137 A; 85 C; 116 G; 124 T; 0 other;
     tgtagtaagg agaagtgcat taagagataa cattagttct ttaaattact tcaattaaat        60
     taaaatatgt catgacattc caattaaatg ttcatagtcc cttttcaaaa cttgatcttg       120
     aaaacggtct gacaggttct cactgtggaa gaagaaattt gtcattatgt gtagacatac       180
     tctggaaaac gaaaagctcc gcttcactct ctctctcagt cagtgtgtaa gaagagaaat       240
     tgagagaatc cagggttcat aggaactgta gacaaattac tcgtggtagt cttttggatg       300
     tagctgacag cgacggacgc aaaatgtcgc acggagacga aagttcggct gaggaagttt       360
     cggccggtgc ttatgtgagt ttggctggcc atgaaggacg cagtatggcc gacgacagcg       420
     gaaattcggc cggcacgtcg gcgagttctg ccggttacga ca                          462
//
ID   Gypsy-355_AA-I repbase;    DNA;    INV; 4610 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-355_;
KW   Gypsy-355_AA-I; Gypsy-355_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4610
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4610
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4610 BP; 1353 A; 971 C; 1153 G; 1133 T; 0 other;
     tttggcgacg gaggtaaacg ttttgttgga ggaagtaaag gtaagaagca atttgcgaaa        60
     atgcgagtaa atattgtggt tccagataaa attgaggtta tgtgatgttt tcattcattc       120
     tagacaacta aactacgcta gtagtagctg tttaattcgc agcggattaa tgttaccaaa       180
     gggtagcggc tgtctaagaa cagcgtgaat cgatactatc aaatgatagt agctattgac       240
     aaacagcgac aacgaaaagc cttcagtggc agctcggaag cgataccatt taccggacgg       300
     tagagactcg tagaattcgg aaatctataa gccattctca gtggcggctc cgaagcgaaa       360
     ataatctact gcttacgtag aggcccggga gcacgataaa caacgttgac ttgtaccgag       420
     acaacgacaa cagctttgta aaatcgttac tgactggtaa gtctatgaaa atgatcaaga       480
     tacgtttaga taatcacgga tcttcaatcc tgttcaatag ctctggccgg tacaatggaa       540
     aagtgggata ttgcacagtt caagtttaag tctctgccga ggaacgccgt tcgtgacgaa       600
     tgggtgaaat acaaaagaaa tttcggctac atagtgtccg ccaccaacga aacggacaaa       660
     acacgaataa agaatatcct gctggcgaaa ggtggtccgg atttgcaaga ggtgtttgcg       720
     tcgatacctg gtgctgacgt gactgaggat gcacagaaag ctatcgaccc ctacgctgtt       780
     gccatcgaga aattggattc gtatttttcc ccgaaacaac acgatacatt cgaaaggaat       840
     cggttctggt tattgaaacc gaacgcggaa gaatcgctcg agaagtttat gctccgctgc       900
     caagatcagg caagcaaatg tgattgtgga aaatcaacag aagaaagcag atcaatcagc       960
     gtgatcgata aggtgattct gtttgcacca agcgaactga aggaacaatt gctccagcct      1020
     gaaacccttt ccgttgacga tgtgaccaaa attgttacaa caaacgagtc cgtgaagcag      1080
     caggctcgct cgatgagcat ccccaccagc tcggacagtc tttcagtagc atacgagttg      1140
     cccagcaatg tgaataagat tcagcatgct aacaataagg agtgtacgcg atgtggacgc      1200
     agagggcatt ttgggaacga tgcttcgtgt ccagcaaaag gcaaagaatg taataaatgt      1260
     agacgagtag gacacttcgc cactcaatgc cgcactgtga tccagtcgaa acgtaaatat      1320
     gacggaccag gacgaggtgg aaaacgtttt cgaccagagc gtgttcgtga aattgacgtc      1380
     cattcacgtg agagctatga aggaaacgca agttcgaaca agaacttcat atttcgtata      1440
     agtgacggag aagagctgct ttggttgaaa attggaggtg ttttgctgca gatgttggtc      1500
     gattccggat gcaagaaaaa cataattgat gagaagtcct gggaatatct taaggccaat      1560
     tctgctgaag tttggaatca acaaaaggaa tgtgatgaag tctttctgcc gtatggcgat      1620
     caagcaaagc cgttgacagt gctaggtaaa tttcagacac aggtagaaat tgaagatgcg      1680
     ggtcgttcct acaagaaaga gaccacattc tacgtagtga aaggcggaca acagtgcctg      1740
     ttagggcgca caactgccac cgatttgggt gtattattcg ttggtttacc cagtacccac      1800
     ggagtatcga tgctgcaatc tagcgcaaag catccctttc ccaagatcaa agggatcaag      1860
     gttagtattc ccattgacca ctcggtatca ccagtctgcc aacatcctcg tcggccaccc      1920
     attgcgctta cagccagaat tgaggataag ttgaattctt tactagcgaa tgacataatt      1980
     gaacctgttg aaggtggctg taaatgggtg tctccattag ttactgtagt gaaggatacc      2040
     ggagacttac gtttatgcgt ggatatgcga agagcgaaca ctgcaatagt acgcgagaga      2100
     catcttatgc ctacgatcga ggattttctt cctagattca cctcagcaaa gttttttagc      2160
     aggttggata taaaggaagc cttccaccag gtggagctag aggaagacag tcgctatata      2220
     accacgttta taacgcacat gggtttattt cgatataaac gtctcatgta cggaattgtc      2280
     atcgcaccgg aaatttttca gcgaattctc gaacagattc tcagtcgttg cagtaagttt      2340
     gctgtcaact tcatcgacga tatcctaatc ttttcggaga ccgaagaaga gcacgaggaa      2400
     gcactgagaa tggtcctgtc aacgctccgg gaatatggag tgctattgaa taaggacaaa      2460
     tgcttgttta aggttacttc gctggatttt ttgggccata ctatctcatc tgagggcatt      2520
     cagctttcat ctgacaagat cgaagcactg actaagttcc gacctcctgc aaatcaagaa      2580
     gaattgcgta gctacctcgg ccttgtgacg tatataggac ggtttcttcc ggatctcgcg      2640
     accactacgg cgcctctccg ggatctcacg cacactggag tgaaattcgt ttggggaatg      2700
     cagcaacagc aagctttcgc aaagttgacg gaaatgatca gtaatgttaa gctgctacga      2760
     ttcttcgata actctctgcg aacgcgtgta gttgctgatg cttcgccggt agctctcggg      2820
     gctgtactgt tacagtttga agattcaacc gatgacaatc ctcgttcgat tgcgtatgca      2880
     agtaagagtc tcactcccac tgaacgaaga tattgccaaa ccgagaaaga agctcgcgca      2940
     ttggtttggg cagttgagcg tttttcatgt tatctgttgg gtcgtacctt cgagttagaa      3000
     acagaccaca agccactaga ggcgatattc aaaccatcgt ctcgaccttg ctctcgaata      3060
     gagcgctggg tacttcgctt gcaatccttc tcgttcacag taaaataccg taaaggctcg      3120
     ggtaacattg ctgatccatt gtctcggcta gttgttgata atgtattcga agagttcgat      3180
     gccgaaaata agtttatggt actcgcggtc atggaatcag cagctatcga tgtgcaggag      3240
     ctggaagaat caatggagac ggatttaacc atagcagcag ttaagaagtg tctgcaattg      3300
     ggacattggg atgaaccgga agttaaaccg tacgcaccgt ttaaaggcga gttaggattg      3360
     gtaggagatt tactagtccg tggtgacaaa ctagttgtac catcaaaatt acgctcaagg      3420
     atgttggatc tagcacacga agggcaccct ggcgaatccg tcatgaagcg gcgtctcagg      3480
     gatcgagttt ggtggcctgg aatggaccgt gaggttacaa atcgagtcgt aaattgcgaa      3540
     ggctgtcgtc tggtttctct gccaaacaaa ccagaaccgt tttcacgtcg accattgcca      3600
     tgtgaaccat gggttgacgt agccctggac ttccttggac caatgccctc tggcgtacac      3660
     ttattggtag tgatcgactt ttacagtcgc tacaaagaag tagaggtgat gcataagatc      3720
     acagccaagg acactgttgc gagacttacc ggaatcttta ctcgtcttgg ttaccctatg      3780
     acgaaaacgt tagataacgc taaacaattt gtgggaacgg agctcgaaga atacagtcgg      3840
     aagcatggca ttcatttgaa ccactcgacg ccatactggc cccaagaaaa cggattggtg      3900
     gagaggcaga acaggtcgct gctcaagcga ttacaaatca gcaatgccct cggtcgtgat      3960
     tggcgtcagg atctataaga ttacttagtg atgtattaca ccacgccaca ctcaacgact      4020
     ggacgcacac ccacggagct tatgtacggc agaacgatca gatccaaaat tccagctcta      4080
     caagacgtca gcaccacctt cttctgaagt tgctgatcga gatcgaatgc tgaaggaaaa      4140
     ggggaaggaa cgtgaagatt tgcgtagaaa ggctaggaag tcatccattg attgtgggga      4200
     cactgtgctg atgaagaatc tcttgccggg aaataagctt cagacaacat tcggttcgaa      4260
     ggaatacaga gtcattaatc gttccggacc acgagtaacg attgaggatc cagagagtgg      4320
     aaaatcgtat gaccggaacg tctcacacct aaaaaagata ccagtggcgg tgcagataca      4380
     cactgatgaa gcaccggtgc ttgcgcctca aagcgatgag tcacaacaag cagagcttca      4440
     atatgcagat gacaccagtt ctgaggaaga ttttcggggt tttgaagaaa gcgcattaac      4500
     aaccgaaacg cggtcatatc agttaccggc caaggaaaag cgcgccagaa agttgccttc      4560
     aagatttaat gattatcagc tttgagttct tatttcgtta aaaggggaga                 4610
//
ID   Gypsy-355_AA-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-355_;
KW   Gypsy-355_AA-I; Gypsy-355_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-172
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-172
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 214-214 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 172 BP; 58 A; 26 C; 42 G; 46 T; 0 other;
     tgtggtgccc aagtacggca ctggtgaaat gtattattag tcgagagtac gggcctggag        60
     agtaaacagt gcgagtcgag aagatacaca ataaaagtac ggtgatttgt tgaatagtaa       120
     tttgcctata gttatattct gaatattaga aataccactc gagaatacca ca               172
//
ID   Gypsy-356_AA-I repbase;    DNA;    INV; 6580 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-356_;
KW   Gypsy-356_AA-I; Gypsy-356_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6580
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6580
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (14-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6580 BP; 2119 A; 1247 C; 1542 G; 1672 T; 0 other;
     ttggcgatcc tgccagtcat ctgttaattg gaggtatggg aaatcattcg gaatgtagtt        60
     gggaaaacgt gattgaaaac cgtgtggaaa gtgtatcaat aaagtaggtg ggaaaaaaaa       120
     aaatgagtga cgaaaacggc gtgccttaag gtccgtcaaa agtggaagaa ggtgcgtaaa       180
     gaaaaccatc gaaaatcgtg agaacgtgta aggaaaacag ttcaagagtg aaaaaggtgc       240
     gtaaagaaaa cccaccgaaa gtaatgagga tgcgtaaaga aaaccgtccc gagtaaaaag       300
     gtgcgtaacg aaaaccaccg aaaaacatca gaacgtgtaa ggaaaaccgt tcggagtgaa       360
     aaagggtgcg taaggaaaac caccgagagt gtgttagaga caaccgctca gatgtgtaat       420
     gaaaacacag aaaaaaatgg cgtgttgaga taaccaccag tatgaataaa tggtctgtaa       480
     agaaaacagc cttgaataat agagaaatgt gtgcttaaaa gctgtgtggg aaaaagtaat       540
     gaaaaccgct tgccaaaaat agcatattga ggtgaaggtc gtcataaaat tggaattttg       600
     gtttagtgca tatgacacgc agtttagaaa cacatgtgaa attaatgcac cgtgaggaaa       660
     agtttatcgg ttaatcaagc aacagaaaag gcagcttgcg aatttcaata gtagttttta       720
     tgtagaataa taaattaaac ttgaaaaaaa ctcagttgca agatatttga gaaagtaatg       780
     tttggagttg caaactaatg caaatatatg ttgtttttaa aatttgcaga ttaaaaccaa       840
     tcattctacg gaggccgttg atcgggaaaa tgtcagcgga aggaagatac gttcgggtcg       900
     accaccaccg tggtgacaat tcggatcaag aagaagacga aacggaattt ccaaaggctg       960
     gaagattcgt tcgtgctccg aaatacagcg acaacgagct tggagagcaa attggtgatg      1020
     aagaaactga cccttacgca gattattatg tggagacaga tccgaatcga gaaaacgaga      1080
     agttgagaca acagctcgcc gacatgaaga aagctcttga ggagataaca tcaaggaaca      1140
     aaggccagca ggaacgtgac atggaaaaga acgatgcaga agatagctgg agtaatccgc      1200
     atacaaacct attgtcgcaa ccatcaggaa gcagtaccag tattagatgg gaccagatca      1260
     aaccgttccc caaaaatgta ccagccaata agatgtgggg agagtggaaa aaatttatcg      1320
     aaaatttcga aattgccgct tctctgtcga acgctgttga tcccgtgcga cgatcccagc      1380
     tactcttctt atctatgggt gatcaactac aaggtatcgt acgagcagcg cagcttcgac      1440
     caaatctgaa tgacaaggag tgttatgtgg ttttcttgag aaacattgag aaccatttgc      1500
     agtccatgac agacatagca gcggaacacg aagccttttc ggctttgcag cagtgccggg      1560
     gcgagtccgt aatgaacttc tattctagac tcatggagaa ggccattgta tgccgataca      1620
     gtgccggcaa taaagaggtt ttcattcgtt cacagctact gaaaggaatg ttgaaccatg      1680
     agttggccag aactgccagg acattttctc ttgatactcc cagcataata caagctgcaa      1740
     cacgagagga gactcaccaa atggaaacga ccccaacaat gaacgagaga gaggaagggg      1800
     tcaatcagat aagaggacac atttccggag ctagtctgaa acgcgacaac aggaatgaca      1860
     ccagaggacg tccaaataaa caatctcgta taaccaggaa cgtagctagc agtcgtcggg      1920
     aaagatgttc gagatgcaac aagtggatac accggaatcg tccctgccct gcactaaaac      1980
     ttaagtgcaa cacgtgtggt aaattcggtc acttttctgt ggtgtgcaga acaaaccgca      2040
     tcaatgtggt ccaagattac gagctaccgc gagagatgtc agctgaaact aaacaagaag      2100
     aggtaaagtg aatttgtttt ttgaaaacct ttacttgaat aaaatacatt caacatcagt      2160
     aatacgcttg agttcttatt cacaaactct cctttgcact ttcaacagct caatgccctt      2220
     tctatcgagg acgtgctgat cgactgtcat ctgggatctt ccagtccgat aagattccta      2280
     atcgattcgg gggcagatgt caacgtcgtc ggaggcaagg attggcacag cttaaaaaag      2340
     gagcatgatt cggggttgat cgaactagag ccaatcacta tcaaatcaga tagagcattg      2400
     cgagcctatg ctactagcgc tccaatgaaa atagatttcg cgttcagagc ttcagtgaga      2460
     gctgttggat cacaaacgtc agtgaaggct gattttttgg tggtaaacga ggggaggcga      2520
     tctctacttg gcagatcaac ggcaagcgac atgaagttgc tattcgttgg ctcacaagtt      2580
     aacgactgcg aaatgggtga cgataaagtt tttccgaaaa tgccgggtgt taaggtcaaa      2640
     tttagtattg acaaaagtgt ccctccaaca cgaaatgcgt actataatat tctagcagcc      2700
     tatcgggaag gcgctcggaa aagattgctg gagatggagg ctagtggaat cattgagaga      2760
     gtaacgatcg cacctgaatg gattagtggc atatccgcag tgcctaaggg aaccaacgat      2820
     ttccgattgg tcgtgaacat gagagcacct aatagagcca ttaagagaga atatttccgt      2880
     ttaccagttc tcgacgagat gaagataaag ttgcatggag cacgatactt cacaaaactc      2940
     gaccttaaaa gtgcatatta tcacttggag ttaagcaatg aatcacgtga tttaaccacg      3000
     tttttagctg agaacggaat gttcagattt acacggctta tgtttggtgt caattgtgca      3060
     ccggagatat ttcagcgtga gatgtctcgc atactggaaa gcgtagagaa caagatagtt      3120
     tacatcgatg atgttctgct attcgcggat agtttggaag agctgcacga caccgtagat      3180
     caggtgcttg aaattctgcg aagtaataat ttgactctga attccgcgaa atgtgaatac      3240
     gataaaacgg agataacatt cctagggcac aaattggatg caaatggatt tcacattgaa      3300
     gaagctaaaa tcgaaactat cggaaagttt agacggccca ctacgatttc ggagctacgt      3360
     agcttcttag gattggcttc gtttgtcagc ccgtatatca gacattttgc tactatctca      3420
     aaccccctgt ggtcagtcat cggcaccaaa acctggacct ggggtgaacg acaagaaaag      3480
     gcattcaaca cgttgaaaca gcgaataatc cattgtgctg tttcattggg ttacttttca      3540
     gagcatgaaa acactatctt gtacacggat gcatcgccga acgctttagg cgccgtattg      3600
     gtacaagaag gtttcaacaa agatcctcgt ataataagtt tcgcttctaa aacgttaact      3660
     gaaaccgaga agaagtatgc tcagaatcaa cgggaagcgc tcgcagcagt atgggcggta      3720
     gagcacttct cgtatttctt gcttggccga cattttactt tacgtacgga tgcgaaggga      3780
     gtaaccttca ttctgaatcg cacgcgtgaa agctcaaaaa gggcgttaac cagagcagac      3840
     ggttgggctt tgaggctcag cccatatgat tattcagtag agtatgtaaa aggcgaagaa      3900
     aatatagctg acccctcgtc tcgactgtac cagggtaacg atataccatt cgacgatgat      3960
     tcaagtccat gggaagtagc tcaattagag gcaaatgaag tcgagtttct aaccgaagac      4020
     gaaatcaaga agtgtaccga atgtgatgga actcttcagg aggtaaaatt gttaattaga      4080
     accctcaatt attttacaac taaaataaca ttattacagg taataaaagc attaagttct      4140
     ggaacatggc cgaagcattt aagcagatac caggctgttg ctggagacct gcacatgaaa      4200
     gacggcattt tgacgaaatt aggttgtgcg gttgtgcccg agaaacttca gcgtaaaact      4260
     ctcaaagtgg cacattccgg tcaccccttg acagctatat tgaaaagtat tcttcgagag      4320
     cgcgtgtggt ggcctggaat ggcttcagat gccgagctat gggtgaagtc atgtgagttt      4380
     tgtgctgtta atgggaggcc agagaaacct actccgatgc gtcgtatccg tgcaccgaag      4440
     acagtatggg aaactatcgc attagatttt aatggtccct atgctaaata tggaggaatc      4500
     cttatcttgg taataattga ctatagatca agatatgcat ttgcgaggcc ggtaaaatcg      4560
     actaatttcg aaaatacgag aaaaattctt gatgacattt tcggaaaaga gggttttcct      4620
     gaggtcataa aaacggataa tggcccaccg ttcaatggtg aagattacaa aaactattgc      4680
     aatgaaagag gaatcaaaac cgttttctcc acgccattct tcccacaaca gaacggattg      4740
     gtggagaatt ttatgaagct tgttaataaa gccatgtcca ctgcttcatc aaaatccgga      4800
     agtttcaacg aagagctgca ggcagctgtt attgcacata atgcagccgc ccactccata      4860
     acaaagatgc ctccggagga agttatgtac ggaagaagaa tacgtcgagg tttgccactg      4920
     ttgaatcgtg gacgggtgga tgtaaatgaa caattgcttg actcaaggga cacagaggcc      4980
     aaacaatatt ctaaacttca cgaggatgta cggcgaggtg ctaggccgtg tagaattggt      5040
     ccgggtgacg tggtcatcgt agaacggcaa tcaaaaacga aaggagaatc ccgattcgat      5100
     aacaaacgat atactgtaaa acaagaagac cacggtgacc ttcagctggc tgacgatagt      5160
     ggccatgaaa ttcggcgtca tgtaacacaa acgaagaaag ttcatcagtg gggcattccg      5220
     aatgcacaag aagcttcaat cgaagggagc gtgttagagc agactaatga tgcagtaact      5280
     cgtccggcta gagaaaggaa ggcaccggct cacctatcag actacgtacg acgagcagaa      5340
     tggtaagcgc taccaagggt tgacattgca acgaagaact cagtctaaat ataaaaataa      5400
     atatttcgtg aattaaatca ttctactcac aatgggttta ttctccaata ttgagatttt      5460
     cgtgagagta ttcggtagca atattaccat atgtcatcct gtagatggag ccgtcctttt      5520
     tcgcagttgt gctttgtgac aattttattg gttggatatt tttgccagcc aaatcatcca      5580
     ttgtgatttc catcctcgat gccatccttt tatctgtgcg ggtgttcagg aatttcctcc      5640
     tcttctctgc tgtttgtcaa gatcctcctt ttttttctgg gcgcgaaaca atatactcgg      5700
     aaaaatctta gaaaacttat ttcttgcttc caatgtttga cgaagagcat tctttttgct      5760
     gcgtggtgcg ggaagcatga gcctatgcat gctataaaac gtttgacttt tactgtgcgc      5820
     cctgtttcca agttgcccgt gagagagaac gagacagcac caacacacgg cgcacagtaa      5880
     aagtcaaacg aacaaaagaa tttatagcac gtacagaggc tcatagacaa acgagttgga      5940
     aagttaagtt gaagtaaact atattgaact cttgtcgagc agtgtcccca acacaagcgc      6000
     aaagttgctg agagatatcc ccttacgaat ttgcctagaa tagctgaact gtttttgttt      6060
     tcctccaaaa ctctcaatag ttttgtgacg tgttgcgtgt atgtactcga gcgcttaaac      6120
     cagtatgcta accactaaca catgtgcggc atgataagaa atctaacagt ctttgacagt      6180
     tgtctcattc gtacatatgt acaagaaaat atttgtaata cacttgtttt caagtcgtat      6240
     ggtaaagaag ggattttcta gcataatatt tggaatgggt ttaaatatta tagcaaaatt      6300
     gaaagctatt tatttacgag atgcctatca caccgcacag taataatgat gatggcgatg      6360
     aactaacact tggattagat acttacgtct caatactcaa gcaaaagcaa aagaagccga      6420
     gtatgccgac tatagtatgt ttatatgttg atgacgaatc gtaaatctct ccacctacga      6480
     tagtaaaagg ttttatcata ttgatttatt tgtttatata tatttatata tatatatata      6540
     tatatatgtg tttttttttt ttttttgaga agaaggggga                            6580
//
ID   Gypsy-356_AA-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   14-JAN-2019 (Rel. 25.01, Created)
DT   14-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-356_;
KW   Gypsy-356_AA-I; Gypsy-356_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-281
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-281
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 215-215 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 281 BP; 71 A; 62 C; 68 G; 80 T; 0 other;
     tgtgaggtgt gtattgggct taatgttgtt gaagtcatat ccctctcgca gtatgatgtt        60
     ggtagcactg tcattagcag ttagcatcat ggtcgagcga cattgtttga gcgtcacacc       120
     ggacgtggcc atcagctcag acaggcttcg tcacaagtgc accagcaacg ctcgggaaag       180
     gtaagacatc ttgaacctct ctcaatttcg tgtgatttcc taactgtgaa taaataatgg       240
     cgaatctccg cgaagccata ttggctacct agatatttac a                           281
//
ID   Gypsy-357_AA-I repbase;    DNA;    INV; 7000 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-357_;
KW   Gypsy-357_AA-I; Gypsy-357_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7000
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7000
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 269-269 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           447..1880
FT                 /product="Gypsy-357_AA-I_1p"
FT                 /translation="MPETRNRKMASIEEEHSNLSNEDTGISESEQFARLSE
FT                 GPSSRTEHQTTIDALKREVAHLTAQLSLLSSKLLDNTPNNNTVARIRNVMA
FT                 DEDVFKSLQTPSTLRDLIPFDGNPIKLNQFLKAVDRIMPILEQARDTPQFD
FT                 VWMQTIRSKIIGDADTILELYGTELDWDEIKNNLIAHYHDKRDEVSLIRDL
FT                 FLLKQTGTVQELYEKISHITSLLMNQLNLNEKNTNVRLAKQQNYQAIGLKV
FT                 FVAGLFPPLGPIIRARQPKTLKEALRFCSEEDNYNYVQNFAKSFNKIPASS
FT                 TQNQQKPPTPPFKQSPHSNFKPPGFFNKPVYFETKQFNPPHQIKPPGFSSN
FT                 SNPNPFYRSNNNNTQSNGFSPNKFGNNQQQSPSGARPYQNFYKKPLSGRTH
FT                 VGYQNQNPNFQIEEEHSQCNEPCNTQYDGAYYYNDQDQPYSNYDEMEANPQ
FT                 HFYSHNTNVAPCEPDTPEDELNFHIAEEAAMKR"
FT   CDS           1841..5332
FT                 /product="Gypsy-357_AA-I_2p"
FT                 /translation="IKFSYSRGSSDEKINNFLPFIKIFTNKGPLKFLVDTG
FT                 ANRNYISPKHVNWDKCRQTQPVKIKNISGNHLTNKYVELDPFPTIPGSSKQ
FT                 KFLVFDFHDYFDGLIGYETLRSLKADILTNENKLQFPTGEVNMYRKYPDSA
FT                 VVQLNCNETRVVCLPTDESDGEFYLEEDISLTPQVIIHAGVYSCSDNRVFA
FT                 TVSNISNEPTKVVINDPLIVELNNFTTTQATPDENLDGSRGRVFDQLRLDH
FT                 LNSEEKINLLKLIAEYEHIFYAENQQLTFTNAIKHKINTKDEIPIHTKSYR
FT                 YPFCHRAEVQRQISKMLDQGIIRPSSSPWTSPVWIVPKKLDASGNRKWRLV
FT                 IDYRKLNEKTIDDRYPIPNITDILDKLGRCMYFTTLDLASGFHQIEVDPRD
FT                 IAKTAFNVENGHYEFLRMPFGLKNAPSTFQRVMDNVLREHIGVRCLVYMDD
FT                 IIVFSTSLKEHLDNLRLIFASLQKYNMKIQPDKSEFLHKEVAFLGHIVTRE
FT                 GVKPNQDKIDIIRNWPLPKNEKELRGFLGVLGYYRKFIRDFAKIAKPLTQT
FT                 LRKGEKIIHTKDFIDAFERCRNILTSSDILQYPDLEKPFILTTDASNYAVG
FT                 AVLSQGIIGKDKPVAFASRTLNKSEEKYSAIEKELLAIVWACRYFRPYLYG
FT                 RKFTLYTDHQPLTYGLNLKDTNHRLIHWRLSLEEFNYDIKYRPGKQNIVAD
FT                 GLSRVREELNANDMDETSSNESSSEDDSAETVHSADTDDSAFIPCTLHPLN
FT                 KFSNQIILKLGVNENETYEEIFPRMFRRTITKINFGVPYLIKMFKEYMDVK
FT                 RSNCIFCPESVIKTLQIVYKNYFSRGKPFKVCISQKLLIDLKTLEDQNLVI
FT                 EQTHTNGHRSVWENNQQIASRYYFPSMKTTIQRFIRLCRICNKNKYERHPY
FT                 KIKYGSTPNPKKSLEIVHLDIFIKNPNIFLSFVDKFSRFATIIPIKSRNIN
FT                 DVRNGLTKYFSLIGTPNLLISDNEPAMRSIEIRTLLENLNVQIHFTPPNHS
FT                 KSNGTVERFHSTLGEIYRCLKPAYPDLNDKELFRIACTTYNNTVHSALKLK
FT                 PREIMYARRDGEEMPLDMNKIIENRNKFYQEVSAQSKSTQNKNLEYHNKAR
FT                 EEPPILLEEGTVYNKVQGVRNKGRERYLPVTVVQDNGRTFEDHYGREIHKD
FT                 NIRRT"
FT   CDS           5295..6998
FT                 /product="Gypsy-357_AA-I_3p"
FT                 /translation="MAERSIKTTFGVPESTTKFLHSQFQMWIHLTTLTCLI
FT                 ITTTLSQTIQLYDLTRNPGLLTIQSGNTLIKTGRHRIYHAIDLNKYKPLLD
FT                 NIELAVDGLKIFTDFDDLTSMLRTKLEDVKTSYRKLNPLKHSRRRRGAFNL
FT                 LGSAIKAITGNLDENDLHQINNDIEELRGSNQDLVRQNNIQVKLNRHLENR
FT                 INKIIDTVNREQSIIKRQIIIARQSFINNKLINQNFTTIRQAFKISYHLDL
FT                 LQKHLDSIFEVIQLSKIHIISKNFLETEEIKFISEKLEEQGITVLNPDQVY
FT                 DYLDIRALFKGSTLYLIIGIPQISPLYFNNLILEPLPINGRTIKLPWNQAI
FT                 IHNNLTYFLKDECQNIGGSSLCKEDTLEDISGDECFSKIIRGLPGQCSFTT
FT                 YRSLDHVTRLTDNHVIVKNASVTLSSSCLQNKRKLFGTTLIFFSNCTISID
FT                 GKNFTTTAFSSKTLPTIIPMDGVKIQQTDFESTIDLKDLEKLHIETREQLQ
FT                 IIKYQHSLRTSTSLGLSSICIILGIYIIIYTRCKRKTSPEDSSLIINVDTR
FT                 DNTKTTNCSKIVSGRSNLQEG"
XX
SQ   Sequence 7000 BP; 2525 A; 1487 C; 1236 G; 1752 T; 0 other;
     ggcgcagtcg tgcggatttt ttttaaagta tcgtaactcg gaatagtcca tccacgaacg        60
     catatcgtgg attagtggtt acatcgttaa aaaaaatttc gcgaacctta cgtagaaaac       120
     atccagtgct acccggaatt tcctccaaga tcgaacggat atcgatcttt tgcggtaagt       180
     aacccctttt tctattaact atctaacttc cttcttgtat ataaaaatct tcttaaaatc       240
     tggggattga cgttttctgg aaaaaaataa aaacgtcatt cctttgaaca aaaaataaac       300
     catactaatt cagagagagg aggaccgacc cacggtatcc gaatctctaa aatatcacaa       360
     accaagaaag aaaaactaac ttaaaaccca acaaaaaaat aaaagctgat agtgatagtg       420
     atagtgatag tgataaatac agggagatgc cagaaacaag aaacaggaaa atggcctcta       480
     tcgaagagga acattcgaac ctaagtaacg aagatactgg aatctctgaa agtgagcaat       540
     tcgcccgtct aagcgaaggg ccttcctcgc ggacggagca ccaaacaaca attgatgcat       600
     tgaagagaga ggtggctcat cttacagccc agctgagcct cctcagctca aaattattag       660
     acaatactcc taacaacaac actgttgcta ggatcagaaa tgtgatggca gacgaggacg       720
     ttttcaaaag cctccaaacg ccatcgacat tgagagattt gattccgttt gatgggaatc       780
     caataaaact gaaccaattt ctcaaggctg tggataggat tatgcctatc ctagagcaag       840
     cgagagatac acctcagttt gacgtatgga tgcaaaccat acgatcgaaa ataatcggtg       900
     acgccgacac aattcttgag ctgtacggca ccgagttgga ttgggacgag attaagaata       960
     atctcatagc ccattatcac gacaagagag atgaggtttc tctaattaga gaccttttct      1020
     tgctgaagca aacgggaacg gtgcaggaac tttatgaaaa aatttcccac ataacttccc      1080
     tacttatgaa ccagttaaat ctgaatgaga aaaataccaa tgttaggctt gcaaaacagc      1140
     agaattatca agccataggc ttaaaagtgt ttgtggcagg gctatttcct ccattaggtc      1200
     ccatcatcag ggcacgacaa ccaaaaacat taaaggaagc tttacgtttt tgtagtgaag      1260
     aagacaatta taactatgtt caaaacttcg caaaatcgtt caataaaata cctgctagtt      1320
     cgacgcaaaa tcaacagaaa ccgcccacgc ccccatttaa acaatcacct cattcgaatt      1380
     ttaaaccacc aggctttttc aacaaaccag tctacttcga aacaaaacag tttaatccac      1440
     cccatcagat taaaccacct ggcttctcta gtaattcaaa cccaaatcca ttttatagat      1500
     caaataataa taatactcaa tctaacgggt tttctcctaa caaatttggc aacaatcagc      1560
     aacaaagtcc atcgggcgca aggccatatc aaaacttcta taaaaaacct ctatcaggta      1620
     gaacacatgt agggtatcaa aatcaaaacc caaacttcca aatagaagag gaacactctc      1680
     aatgtaacga accttgtaat actcagtatg atggagctta ttattacaat gaccaagatc      1740
     aaccttattc gaactacgat gaaatggaag ctaacccaca acatttttac tcacataaca      1800
     caaacgtagc tccctgcgaa cccgatactc cagaagatga attaaatttt catatagccg      1860
     aggaagcagc gatgaaaaga taaacaattt cttaccgttt atcaaaatat ttacgaataa      1920
     aggacccctg aaatttttag ttgacactgg tgctaataga aattacatta gccccaaaca      1980
     cgtcaattgg gacaaatgta gacaaactca gccagtgaaa atcaaaaaca ttagtggtaa      2040
     ccatctcact aacaaatatg tggagcttga cccttttcca actattccag gttcaagcaa      2100
     acaaaaattc cttgtcttcg actttcacga ttactttgac ggtctcattg gatatgagac      2160
     gctaagatct ttgaaagcag atattcttac aaacgaaaac aaacttcaat tccccaccgg      2220
     cgaggtaaac atgtatagaa aatatccaga ctcagcggtc gtacaactaa attgcaacga      2280
     aactcgagtc gtgtgtttac caacagacga gagtgatggt gaattttact tggaggaaga      2340
     tatctcacta acgcctcaag taataattca tgccggagtg tatagttgct cagacaatcg      2400
     cgtctttgcc actgtatcaa atatctcaaa tgagccaact aaggttgtga ttaatgaccc      2460
     actgatagtg gagttgaata atttcaccac aactcaagca accccagatg aaaatttgga      2520
     tggaagtaga ggccgagtct ttgatcaatt gagactagat cacctcaata gtgaggaaaa      2580
     gatcaaccta ttgaaattga tagctgaata tgaacatatc ttttatgccg aaaatcagca      2640
     attaacgttt acaaatgcca ttaaacataa gatcaatact aaagatgaga tacctataca      2700
     cactaagtct taccggtacc cgttctgtca cagagcggaa gtacagagac aaatttcaaa      2760
     gatgctcgat cagggaataa taaggccctc gagtagccct tggacgtccc ctgtttggat      2820
     cgttccaaaa aaattggacg catcagggaa caggaaatgg cggttagtca ttgactaccg      2880
     taaattgaat gagaaaacga ttgacgatcg ttatcccatt ccaaatataa cggatattct      2940
     agacaagcta ggacgttgta tgtattttac aaccctagat ctcgcgtcgg gtttccacca      3000
     aattgaagtt gacccgcgcg atattgcgaa aactgccttc aacgtcgaaa atggacatta      3060
     tgagtttttg aggatgcctt ttggcctcaa aaatgccccc tcgactttcc aacgcgttat      3120
     ggataacgtg ttacgagaac acattggtgt tcggtgtctt gtctatatgg acgacatcat      3180
     agtgttctcg accagcctta aagaacatct cgacaatctg cgactaatat tcgcgagttt      3240
     acaaaagtat aatatgaaaa tacaacccga taaaagcgaa tttctacaca aagaggtagc      3300
     tttcctcggg cacatcgtta cccgcgaagg agtgaaaccc aaccaagata aaattgacat      3360
     tatcagaaat tggccactcc cgaagaatga aaaggaactt agagggttcc taggtgtttt      3420
     gggctattat cgaaagttca tacgggactt tgcgaaaata gcgaaaccgt taacccaaac      3480
     attgagaaag ggagagaaaa tcatacacac taaggatttc atagacgcat ttgaacgttg      3540
     tagaaatatc ttaacgtcaa gtgatattct ccaatatccc gatctggaaa aaccatttat      3600
     tctaacaaca gatgcctcca attacgccgt tggcgctgtc ttatcacaag gcataattgg      3660
     caaggacaag ccagtcgctt ttgcttctag gactctcaat aagtcagagg agaaatactc      3720
     tgccattgag aaagaactat tggcaattgt ctgggcttgt agatatttca ggccgtatct      3780
     ttatgggcga aaatttacgc tatatacgga ccatcaacca ttgacctacg gactgaatct      3840
     aaaagataca aaccacaggc tcattcactg gaggttatct ctagaagaat tcaattatga      3900
     cataaaatat agacccggaa agcaaaacat tgtggctgac ggtctttcta gggttcgaga      3960
     agaattgaat gcaaacgaca tggatgaaac atcttctaac gaatcttcat ctgaagatga      4020
     ctccgcagaa acagtacatt ccgctgacac ggacgattct gccttcatac catgtacatt      4080
     acacccactt aataaattca gtaaccaaat tattttaaaa ttaggagtca atgaaaatga      4140
     aacctacgag gaaatatttc ctcgaatgtt taggcgtacc atcacaaaaa ttaattttgg      4200
     agtaccctat ttaataaaaa tgttcaaaga atacatggac gtaaaaagat ccaattgtat      4260
     tttctgtcca gagagcgtta ttaaaacatt gcaaatagtt tacaaaaatt acttcagcag      4320
     ggggaaacca tttaaagtct gcattagtca aaaactactg atagacctaa aaaccttgga      4380
     agaccaaaac ctggtaatag agcaaacaca taccaacgga caccgcagcg tctgggagaa      4440
     taaccaacag atagccagtc gctattattt cccatcgatg aaaaccacaa tccaacggtt      4500
     tataaggctc tgtcgaattt gtaataaaaa caaatacgag agacaccctt acaagataaa      4560
     gtatggctct acacctaatc caaaaaaatc attagaaata gtacatttag atatttttat      4620
     aaaaaaccct aatatatttt tatctttcgt agacaaattt tcccgatttg caacgatcat      4680
     accgatcaag tcccgcaaca taaacgatgt aagaaatggg cttacgaaat acttttcctt      4740
     gattggtact ccaaatttgc tcatatcaga taatgaacct gcaatgcgtt ctatcgagat      4800
     aagaaccctt ttggaaaatc taaatgtcca aatacatttc actccaccaa accacagtaa      4860
     aagtaatgga accgtcgaaa gattccactc aacgttaggt gaaatctatc gatgcttaaa      4920
     acccgcatac cccgatctaa atgataaaga acttttcaga atagcatgca ctacatacaa      4980
     taatacagtg cattcagctt taaaattaaa accaagggaa atcatgtatg caagaagaga      5040
     cggagaggaa atgcctttgg acatgaacaa aattatagag aatagaaata aattttatca      5100
     agaggtcagt gctcaatcga aatcaaccca gaataaaaat ttggagtatc acaacaaggc      5160
     gagagaggaa ccacccatcc tactggaaga aggcaccgtg tacaacaaag tgcagggtgt      5220
     gcggaataag ggtcgagaaa gatacctccc tgtcacagtg gtccaagata acggtagaac      5280
     gtttgaagac cactatggcc gagagatcca taaagacaac attcggcgta cctgaatcca      5340
     ctacaaaatt cttgcattca caatttcaga tgtggattca cctaacgact ctgacatgcc      5400
     tgatcattac gactacatta tcacaaacta tacagctata cgacctcacg agaaaccctg      5460
     gactactaac gatacaatct ggtaacacac tcataaagac aggacgacac cgcatctatc      5520
     atgccattga tttaaacaaa tacaaaccac ttttggacaa catcgaactc gctgtcgatg      5580
     gactcaaaat tttcaccgac ttcgacgacc tgacatccat gctaagaaca aagttggaag      5640
     atgttaaaac ctcatatagg aaactaaacc cattaaaaca cagtagacgg aggcgaggag      5700
     ctttcaacct gctaggatca gccataaaag ccataactgg aaatctagac gaaaatgatt      5760
     tgcatcaaat aaataatgat atcgaagaac taagaggtag caatcaagat ttagtcagac      5820
     aaaataacat tcaagtaaaa ttaaatagac atttagagaa tagaatcaat aaaatcatag      5880
     acacggttaa tagagaacag agtatcatca aacggcaaat aataatagct agacagtcat      5940
     ttataaataa caaactgata aatcagaact ttacgactat ccgacaggct tttaaaattt      6000
     cctatcacct tgacctttta cagaaacacc tagattcaat ttttgaagtt attcagttat      6060
     caaaaatcca cattatatca aagaacttct tggaaacaga ggaaattaaa tttatctcag      6120
     agaaattaga agaacagggc ataacagttt tgaatcccga tcaggtctac gattatctgg      6180
     acatccgtgc tctttttaag ggctcaacac tctacttaat aatcggcatc ccacaaattt      6240
     cgcccttgta tttcaataat ttgatactgg aacccctacc aatcaacggt agaactatta      6300
     aattaccctg gaatcaagca ataatacaca acaacctgac ctactttctc aaagatgaat      6360
     gtcaaaatat tggaggaagc tctctttgca aggaagatac gcttgaagac atctcaggcg      6420
     atgaatgttt ctcaaaaatc ataagaggac tccccggaca atgcagcttt acaacctata      6480
     gaagtcttga ccatgttact agactaacag ataaccacgt catagttaaa aacgcatcgg      6540
     tcacactatc atccagctgc ctgcaaaaca agcgaaagct ttttggcaca accttaatat      6600
     tcttctcaaa ctgtaccatt tcaatagatg ggaagaattt cacaactact gcattttcat      6660
     cgaaaacgct accaacaata atacccatgg acggagtaaa aattcagcag acagactttg      6720
     aatcaaccat agatctcaaa gatctggaaa aattgcacat cgaaacccga gaacaacttc      6780
     agatcatcaa ataccaacat tctctccgaa catccaccag tttggggcta tcttccattt      6840
     gtatcattct aggcatttac atcattatct acactcggtg taagagaaag acgtcgccgg      6900
     aagattccag cctgatcatc aacgtagaca cacgagacaa cacaaaaacg acaaactgca      6960
     gcaaaattgt atcgggacga tccaatcttc aggaggggct                            7000
//
ID   Gypsy-357_AA-LTR repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-357_;
KW   Gypsy-357_AA-I; Gypsy-357_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-358
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-358
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 216-216 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 358 BP; 118 A; 89 C; 76 G; 75 T; 0 other;
     agttaacgaa aactcctcat caaacaaacc cacacggacg ccaacacctt tcaatccaag        60
     acgaaccgga caatcaccac cagaaggaac atgctgacca tgcaccgtat gcaccgatcg       120
     tcaccacgtg ccgacgtagc accactgcat ggcaacaaag acggacgagt cacctgatcg       180
     cggaatttgc agagtcagga gcgttaggga aataggtagg tccaactcag accagagaag       240
     ggaacaataa atcaattcgt gtctgtacgt tgtggagtgc acttgtgatt ccgaaatcct       300
     cctgttaaat tagacttagt tttttaaaaa gtcttttcag aagacaaatg acttaagt         358
//
ID   Gypsy-358_AA-I repbase;    DNA;    INV; 6415 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-358_;
KW   Gypsy-358_AA-I; Gypsy-358_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6415
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6415
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 183-183 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6415 BP; 2081 A; 1120 C; 1498 G; 1716 T; 0 other;
     ttggcgatcc tgcctataca gctcgctgga ttgataatgc taatgattcc gaagtgggtg        60
     agtaataatt cataattgat aagaaaagag tgtgtgctga agatcaacat tgaaacctac       120
     taggaagtgc tgccaaaaaa aaaaaagaag gattgcaaaa aaatataata ataaataaat       180
     aaaacgcaca aaattcctcg ttaatatttt tatatgcttc ttgtgaagat cattgctgag       240
     tcgggttaag cccaaggcca gttttgcatt ggaaagtttt gttttttgaa ccgagtttag       300
     ctcaaggtca aaatggttga gtcgggttaa gcccaagacc aacataaaac taattccgtt       360
     gagtcgggta aagcccaagg ccaacagata cttatttccg ttgagttgcg tgtagcccaa       420
     aatcaactta tagttatatg tgaattttgc atcgagtaca gctcaaagta aaaactgttg       480
     agtcgggtta agcccaaggc caactaaaag ttattccgtt gagtcgggta aagcccaagg       540
     ccaacttaaa cttacgccgt tgagtcgggt acagcccaag gccaacttaa acttacgccg       600
     ttgagtcggg tacagcccaa ggccaacgta cactatacat gtcagtttct ggtataaaca       660
     gttgagtcgg gtaaagccca aggccaacat gtttcaaata actgcttaat tatatatgat       720
     taattgatta aaagcaaaca ttaaacaaaa caaaaataat aataaaatat tattaaaaaa       780
     aaaaaaaaaa aaaaaaaaaa aactattaga aggattaaaa aaaaaatctg gctgcactgc       840
     ccatttttga tgtgaagtgt actatgctgg aatggaacgc atggaaatta gaataatgaa       900
     tcagtgtgcg tgaaaggaat tgagtaccgt tatttttcat cgtgaatcag ctcagttgtt       960
     tgcgtcgtgt ctttcggagt atacatttga aagccggtcg agttattttg atcttctggg      1020
     gaaaaacgga aaaccaattt cattgttgtg aagggagtgc atttcagaaa gatttttgtt      1080
     tggtgaaaac aatacgaaaa tgagtggatc gtggcgtgag agcgacattt catcgccaga      1140
     agagtcgttt gaaaaagatg aaagtgttga gaatgggaaa atggctgaag aagctgcgat      1200
     ggcaatgcct gtgttggata gtgctcgtgg tgcattgaaa aaggcaaaac aagtgaaagc      1260
     aaaacgggga aaagccgctt cgaaatggct ttcaggatca tggccgcttc aacagtttga      1320
     tggggaattg cctctgaata aacgtaaagc cgaatggata cggttccgga accagtttga      1380
     gcgaatcgtc gcctgtaagg aaccagttga tcccgttgtg cagctgacgg gattgaaaat      1440
     atttgccggc agttacctac tgagcgtaat cgaagctcag gaaaatttgc tggttggtgc      1500
     ggataacatt tacagcgcta cgatcacagc gctgaacagg tagatgattg ttatcatttt      1560
     ttatatgtga agtgtttctc gaaccgtgaa atctagctac tccgccgcca cagggatggt      1620
     acaaccattt caaattttca cattttgtgt catcatgtta attttttgtg attatcataa      1680
     ttgatatagg gcaattgtaa cgttagctga gaacctacgg aaaatcagct gaaatatgct      1740
     taaaaaaaaa atcagggaat atgtgtttaa aaaaaataaa actctgaaaa taaacccttg      1800
     cactaataat atgaacaata ttccgctagt ggaggtatgt ttttagaatc ccagtaatat      1860
     tagtagctga ttaatatttt attcagctga aatatgctta agagtgattg gttaaactct      1920
     tatgctatta aaatgtttaa taatgttcca gtagtttaaa aaaaaaaaaa aaaaaaaaat      1980
     aatgatattt cgatatattt ttcgttttta ttttttattt tctgctgacc agttgtattt      2040
     attattgtat gcgtgaccaa agtgctattg atgttcacgg ttgggaatca ctgacttgac      2100
     gatcaagtgt gatattgatt taagttatat tgcaataggt attttgatca aacttgcgac      2160
     tatactaagg agaggatgaa gttccgagaa atgcgaatgg ttgcttctga gcctttcgtt      2220
     gactgggtgt tgcgattgga aaatcaggca aagttttgtg agttcgatcc tgagcaacgt      2280
     tatgaagaat tctcccaggc gctgatcagg cgctctgtgc cggaaatcgc aaccaagctt      2340
     tatgaaatga gcgatgtgtt tcacaacgat cttgagcgga ttatggccca cggtagacac      2400
     cttgattata tccgactgga aacagaggag gttaaactaa atgcaaaggt agaaactagc      2460
     accaatgcag agggtgtgaa tgaagcgaat ttgatgaagc ctgttaacgc agtattcaat      2520
     cagatgtcag gatcaagttc aatgcgctat ggttctcgtc gtgaatcaca ctcgaagggg      2580
     aatggtgcag ttcggttccg taacgtgggt atgcgtaatg gatcaggaca ctatagcgct      2640
     aacaaccgca attgctcgaa atgcggaaga atccacggtt tcaaggactg cagggctcat      2700
     cgcgtcaaat gctacgcatg tggaaaagag ggtcatttcg ctgagttttg tttctcaaga      2760
     accaaagacg atctacagaa taaacgagga cgcgttgaag gtggcgaaac gtataaatct      2820
     gaggttggaa ggatcaatca ggtaagatag attgatcggt gattatttgg gggtgcacag      2880
     aatggtctct atgataaaca tgccaaaaca ataaagaaaa atttcaaatg aaacattttt      2940
     tttatgaatt atttacagtt gataactggc agcgtaaatg acccacgaaa acatgatgat      3000
     gctagaatag taatatgtaa aattggaacg gaagactttg agtttcttgt cgatacaggt      3060
     gctactgtta acaccattac gacaatcggg tggcaaataa tcaaacgtaa atgccgttca      3120
     gtcgtacagg atttcgagct atatccagaa gaaattttac ggagctatgc aaatcagcat      3180
     ccactacaag tggagtgttc gttcacagcg tatattggcg tgaatggtca accattacag      3240
     ttagcaaagt tctttgtggt tgagggtact gatttgtcgt tgctgagtta tgaaacagca      3300
     aagaagttga atttggttca cataggcctg cgaaacatca tgggtgcaca tgctacgggt      3360
     tttgacaaaa ttgtctgctc aatcactgac actaggttgg agcccaagat gctcgatgtt      3420
     gctactgcac ataaaaacga accgcaagag tttccaaaac ttcctatcgc tgccgtgaaa      3480
     ttcaaagtgg atgaatcagt cgcgccaaaa caaattatcc gatatagcat tccgaaggcg      3540
     tttgaatctg ctaccaatga gagattgagg ttaatggaag aaaggggtat cattgagagg      3600
     gcagataaag aaaacgacgt tataacatgc gtttctccgt tggtattagt accaaagggt      3660
     acctccgatt ttcgaatagt tgtggattat cgcgaggtaa ataaggcaat tatccgagaa      3720
     ccgtacccta tgccatcgct tgacaagatt tggaccgata ttcctagtgg gactatgttt      3780
     ttctccaaac ttgatctgaa agacgcatat ttccacgtag aattagccga agaggtccga      3840
     cattatacga ctttcatgac agccaatgga ttaatgcgct tcagaagact accatttgga      3900
     ttgtcatgtg ccccagagtt gttccaaaga gtcatggaac ggttactgat gaagtgcaaa      3960
     cacatcatca tatacctaga tgatatcttg gtgtttgggc gaactttgga agagttaaga      4020
     tatcacgttg acgaagtaaa aagagtttta gctgaaaata accttacggt caacgaagag      4080
     aaatctaaat atgatcagat gactgtagat tttcttggat ttacgattga cggtagcggt      4140
     attttgccaa tgcagaagaa aatatcggat atcaagatgt ttgcaaggcc caaggataca      4200
     tcagaagttc gtagtttttt gggaatgctg acatacataa gtccgtttat gagaaatttc      4260
     tcccataaaa caaaaatttt gcgcgaactt ctaacggaca atgcaaagtt taactggacc      4320
     agcgaacatc aagaagcatt cgaaaggctt aaggatgaag ttgaaactga tttgatcaag      4380
     agaggatact tcaacgaaac tgatcggact gttttataca cggatgcttc gccgtgggga      4440
     ttgggagcga ttttagccca agaagtggaa aaatctggag tgcgacggat tatcgcttgt      4500
     gcttccaaaa gtttgtcagc agcagaatgt cggtacccac agttacatcg tgaggcattg      4560
     gcaattatat gggcgatgga aaagtttgca tactatcttc tcggtagacg gtttacactg      4620
     cgatcggata gtgaggcact gatgtttatg accaagaatg gtaaccgtaa ggatgttggc      4680
     aaaagaattt tatcacgcgc tgagggctgg atgctaagaa tggaccactt ctgctttgat      4740
     tttcaacatg tttctggaaa agacaatatt gccgatgctc catcgaggat tggagctaag      4800
     acggaaagtc cggcgtttgg aaacgaaaag gagtcccatg aactgttttc agtgacagcg      4860
     agtactagtg acatcaatga ccagttgtta gcgttaacaa atgcagaagt taagaaggaa      4920
     ttgctggttg atgatgagat acaaactgtc attaagtggt tggagaagaa ggaaaagtgg      4980
     cccgaatgta ttgcgaagta tcaggcattc cagagcgatt tatatttgca aggagaggta      5040
     ttgatgaaac gcgaaaaaat ggttttgcca tcaacattac ggaatagagc gttacgattg      5100
     gctcaccgaa gccatccagg catgtccacc atgaaaaatt tcctaaggca agggttgtgg      5160
     tggccaggta tggaccgaga gattgaagaa tttgtaagaa gctgcccgga gtgccaactt      5220
     gtgacagtaa catcacgccc tgtacccatt gagatgacag aactacccca gaacccgtgg      5280
     gattacgtat caatggattt tgcctctgca tccgacatac ttaactggaa agctttggta      5340
     ttgaccgaca attattcacg ttttcttgtt gccgttccgt tagataaaac agatacggaa      5400
     gccgtgaaaa agaatttgaa aaggatcttc aacacttact atattccgaa aactttgaag      5460
     gctgacaatg gccctccttt caacagcgcg gatttgaaag catggttaaa taatgtatgg      5520
     ggagttcggt tgattcatag cactccttta aatccgacgg agaatggtct tgttgagagg      5580
     agcatgcagg gcatcaataa gatcacagcg attgctaagc ttggaaagct taattggaag      5640
     gaagccctat ccgattacgt ggctgcgtac aattcgtggc ctcatcatgt gacaaagatc      5700
     cctccggctg agttgatgtt tgggagagct gtgcggagtg tactaccaaa tcgtcgtaca      5760
     gatcagcggc agtcgttcga tgaagaacta cgagatcggg atcagatggc aaagtttaac      5820
     cgtaattcaa gagaggacag taatcgcaga gctcggagaa ccgaaatcga agttggagac      5880
     accgtactgg tatcgcaaca aaagcgggat aaagcggaca caccatacaa aaatgcgttt      5940
     cacaaagtag ttaaaattca aggagctggc cgagccacga tcacggatgc tacaactgat      6000
     aaaacatacg atcgtaacgt aaagtttttg aagaagtacg tggaacgcaa aacaaacaaa      6060
     ccagtagaca atggtaaagt aaagaaaaaa aaaacacaca cacacacaac atattatttt      6120
     acatgttaat ctttctgttg caacatttgc ttcatttttt tttctcaaat agcaccgcag      6180
     gagaaggagc agtcgaagct acagacgagt aacatccatg gaacaacaga cgaactgcgt      6240
     aatggtacca aacgttccac tcagggagat tttccagatg atgaagagcc cattggaaaa      6300
     cgccgaaaca cccgggagat cagaaaaccc caaagattcc ttaatgcgat cagacgtgct      6360
     tatgaatgat atatgaaatg tttctattta cattatcgtt gatgtgaggg gagga           6415
//
ID   Gypsy-358_AA-LTR repbase;    DNA;    INV; 138 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-358_;
KW   Gypsy-358_AA-I; Gypsy-358_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-138
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-138
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 217-217 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 138 BP; 43 A; 12 C; 39 G; 44 T; 0 other;
     tgtggtatcc tagatttagt gtgtaagaat gttgggacag tatggattgg gacgggctgg        60
     aaaacagtcg taataaagag agtggttgtt ttgataatat aaatatgtgt agtaattagt       120
     ggtctccaga atatcaca                                                     138
//
ID   Gypsy-359_AA-I repbase;    DNA;    INV; 7232 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-359_;
KW   Gypsy-359_AA-I; Gypsy-359_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 184-184 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7232 BP; 2251 A; 1412 C; 1702 G; 1861 T; 6 other;
     cttggcgccc aactgaaatt tgcgtagact atcagagccc gggtacacta gaataccgat        60
     tgcgtgtctt tgcggaagtc tctggtaacg tccagacttc gctgacgaac ttaaccaaag       120
     cacataaaac aggtaaccga ttgatgaatg ggaatcaata caatttattc ttaaagaggg       180
     gtcttggatg tgagtaaacg gtctgactag ctaccaacca ttgaacaaaa cttaataaaa       240
     gcatacgaat agaagtcgga gagtttcgcg gtgaattccg gaaccttgaa cagtgttgtg       300
     tggttttcag actgtggaat aaaacaccaa acaagaacga tacgtttatt aaaaataaac       360
     gagctaaaac taggattttt ttcaattaat tgcttcaata gggagcgtga acaaatttta       420
     ggtttttcaa attttaattt cgagctttcg aacaagcgga agtgttttct tcagtaggat       480
     tttcaaattt ggttcagtgg aagcaccact tgaacagttt ttagtttctt ttcaaatttt       540
     attctaagat tttcttagtt gaatggagat tggagaaatg gcgatgtcca atttcgcatc       600
     gtggtaccac gcgatgaatc ctggccatct gaccacagat gagctggagc acgagatgaa       660
     aatccgtggc attccgttag atgtttcacg tagcgctgcg gaacgaacgt tgcgtagcca       720
     cctgaaagag gaaaaaggca aatcggacat tagaatgaaa tttgtgagtg aatcggtagt       780
     tgctgagtta gaggtttgtg acgataaact gaatgggata aaaaatcacc tagaaaagcg       840
     agtgtccaag aaagcgccag atcagttgta caaaacgaaa ttggttcata tctttttccg       900
     aatgcagcga ttgcaagctc acactgagga agaagacgaa ttgaatagcc tcgcgttgat       960
     tgctggtgaa tgtgtaaagc ttctcaacgt gtattattca cccacatccc accttctaga      1020
     agtgcgagag gccgaattgg cgattctaaa cgagagtttg aatcaaatwa ggcaagagct      1080
     agtaccgaat gatggtgggc aaggggagaa taatatgaat gaaagatcag atgggagatc      1140
     gacgggcgaa aacgtgactg agccgaatkg taggaatgta gaaagcgata gggtgagtac      1200
     mggaggtgag caatctgaga agacgacgga tagtgagaaa gagggattag catctgagat      1260
     ccgtcagcta acggcggtag tgagccaact actgcaacgc atcacggtac ttgaagctaa      1320
     tcaaaacgtt gctcaaccgt tgaatcttca tacaggtaca gccaacagta cgcagattga      1380
     gaggaatatg gtggtagaga aagaggtaga agaggttcag gaaaagtcag tagatttctt      1440
     aggctggttg aaacagagga atgagtcgtt agatacgctg aaaaattcgg atgaagacaa      1500
     gcacgtcggt agtaagctga atgagaggac cgaaaggaga gttgaaaata gcaggccatt      1560
     gagtattgga aataaatttc cgattcataa atggtctgtg agatatgacg gaatggataa      1620
     tggcaggcgg ttgaatgaat tcttgaaaga ggtggaattc aacgcccggt cagaaggatt      1680
     ttctgaattg gagttgttac agggagctca ccatctgttt acacagaagg cgagatcctg      1740
     gttcatagat atcagtggag agataaggtc atggagcgag ttagttaggg agcttaagaa      1800
     agagttctta ccagtcgata tagactatgt ctatgaacgg caggctaata accggaagca      1860
     gggtcccagg gagaagttcc aggactttta cttggacatg gtccggatct tccgcagtat      1920
     gtcgatcccg tgggacgaaa agcgcagatt cgatgttctt ttccgcaata cccgcgaaga      1980
     ctgtaggatc gcgatgctag cagcgaatgt gaacacgata cctaaaatga aagattttgg      2040
     taagcgtttc gattcgataa attggcaaat gtatcagagg aaagaaaacc ggttttcgag      2100
     gaaagatgtg atacaaattg acgaggttag gagtcaacag tcgttcaaag gtagtcaaga      2160
     caggtacacg aatcagaaca gggaagattt aaacaaaaaa ccgttcaggc cgaaatctca      2220
     gcagttccca aaccaatcgt ggaaacaaca acaacccact aatcaaaaat ccaatgaaaa      2280
     gcaaaacgat caggggaaat tgaatcctaa accggaccat actcaacggc aaagcaaccc      2340
     acagcccgga cccagcggaa caaacgcact acaaagaatt gtaaacgcat atattccgcc      2400
     gggcaaaaat gtgtgcttca attgccacga aggtggacat gggtttgaag attgcgattc      2460
     tgatcggaat ttgttctgct tccgttgtgg mtttccaggt tttaaaacta aaaattgtcc      2520
     atattgcgag tcaaaaaact tgcccaagac tgcctaaaga ggcaagacag tcttgcaaat      2580
     aactccacaa gacctcacac agagccagca gttcccgact ctctcgaaca gcgtggttac      2640
     tcaagagtga gtggaggcac agtagaagag accgaaatag caaccatgct cgtgactctc      2700
     agcaatgatc ccagaccatt cgtgagagtg gaaatgctgg gcatctctat agtaggactg      2760
     ttagacagtg gagcagccaa aacagtgtta gggatgggtt gtaaaaaact gattagcgcc      2820
     ttaaaattaa aattgagacc cacgaacata gacttgaaaa cagccggagg acaawgttta      2880
     gaggtcatag ggacaactga tgtacctata acttttaacg gagaaaccaa actcttacca      2940
     gttctggtag ctccaaactt aagtcgtcgt tgcattcttg gctacgattt ctggcaagcc      3000
     ttcggaattc gtcctacggt ttcccagtcc attgatgcga tcgacgaggc tgaaagagaa      3060
     ccaatggaaa cgatgagcga actgagtgat gatcagaaga gacagctaga ggaggtgaaa      3120
     aacatgttcc tcccagcaag tccaggtcat ctgggtaaaa caagcttgat tgagcatcac      3180
     attgagctga aggaggaatt tctgaatgcc gatcctgtcc gaaagaaccc atatccatgg      3240
     agtcccgaga tccagaaaaa gattcatcgg gcattggaca atatgatcag ggacggagtg      3300
     gtcgaacctt ccaattcaga ttgggctttg cctgtcgttc cggtcaaaaa gcgagacagt      3360
     gaggatgtac gactgtgtct cgatgcccgt aagcttaacg agcgcacgaa gagagatgca      3420
     tatcctctcc cgcatcagaa tcgaatcctc agccaactag gtccattcaa atttttaacg      3480
     accattgatc tttcgcaggc gtttctgcaa gttcctttga accgtgcatc gagaagattc      3540
     actgctttct cggttccggg gaaagggctt ttccagttca ctaggttgcc cttcggacta      3600
     gtaaatagcc cggcaacgct aagtaaactc atggatagag tgttgggaca tggtgaactt      3660
     gagcccgcta tatttgtcta tttagatgat atagtggttg cgagccacac ttttgaggag      3720
     catatcgcga agttgaggga attggctcga agattaaaag aggcgaatct ttttatcaac      3780
     ctcgagaaat caaaattctg ctgccacgaa ttgccttatc tcgggtacat cctttccgaa      3840
     gaaggattgc ggcctaaccc agatcgagtc caagcgatcc tggggtttga ggcccccaaa      3900
     tcgataaggt cattgagaag attcctcggt atggttaact attaccgcag gtttatcgac      3960
     aaattcagtg aactcaccgc acctttgacc gatctgttga aaaacaaacc gaaaaaggtc      4020
     cggtggaatc aggcagcaga gaatgcgttt attgccatca aagagcggct gattactgcc      4080
     ccagtcatgg ctaatcctga cttcagcgtg ccgttttgcg tgcaaacgga cgccagcgat      4140
     acagctctcg caggggtgct cactcaggtc cagaatggcg tggagagagt gatagcatac      4200
     cactcagaga agcttaaagg tgccgaactc aattaccatg ctgcggagaa ggaaggatta      4260
     gcagcccttc ggtgtattga gaaatttcga tgctatatcg aaggcacacg cttcactctc      4320
     gtcacggatt catcggccct ctcatttatt atgagagcca agtggagatc ttcatctcgc      4380
     ttgagccgat ggagtatcac tctgcaacac ctcgatatgg agataaagca ccgcaaaggg      4440
     aaggaaaaca tcgtccctga tgctttatcc cgatcgattg aggcacttga tgtcgtagaa      4500
     acggacaaat ggtaccgaaa tctacttgag tcggttgaaa atgatcccga aaagtttgtg      4560
     gactttcggc tccaaaacgg aaaactatta aaatttgtag ccacacaatc agatgtgttg      4620
     gactacagat ttgaatggaa agaatgcgta ccggagtccg agcgtcagcg aatcatccgc      4680
     caagagcatg atgagatgat gcacataggg ttcgaaaagt gcattgaaaa agtcaagcgt      4740
     cgctactatt ggcccagaat gagtgctgac gtcaaaaaat acatttccaa ctgtgaaact      4800
     tgcaaagagt gcaaacactc aacaacatcc actgctccgg aaatgggaaa ccagcgaata      4860
     gccaccagac ccttccagat tgtgtgcatg gactatatac aatcccttcc acgaagcaag      4920
     cagggcaatg cccacttatt agtcgtctta gacatcttct ctaagtactg cctgcttgct      4980
     ccagtgaaga agattgcttc agggaatctg tgcacaatct tggaagaaag atggttccga      5040
     aagctgtccg ttccgcagta tgtgatcacc gataacgcga cgacgtttct gtccaaagaa      5100
     tttcaggatc tactgaagag gtatgaaatt cagcactggg cgaacgcacg acaccggagt      5160
     caagcaaatc ccgcagagcg attgaacagg acgataaatt cgatgattcg aacatacgtc      5220
     cgctctgatc aaaagctctg ggatactaaa atatcagaaa tcgaatttgt attgaacaac      5280
     acggtgcatg gctcgacgaa gttcacgcct catcgagtga tcttcggaca tgagatggtc      5340
     acacgtggct ctgaccatcg aagagaagct gagagtgagt tctcagtgga tgttcgagct      5400
     gagaagttga aaggaatcag ccagaagaac ttcgatatgg tcagagcaaa cctaaaaaga      5460
     gcgtatgaaa gtacaaaaca tcaatacgac ttgcgtcaca aacgctactc acctacattc      5520
     actgtcggac aaagagtctt caagcgaagt ttcgcgctgt ccgaagctgg caagaacttc      5580
     aacgcgaagt taggcccgca atataaaccc tgcgtcatcg ttgcgaggaa ggggaacagt      5640
     tcatatgagg tagccgacat gaacggaagg tcgctgggag tattttccgc agctgatcta      5700
     aaagcctgaa aagggaaatg tttttaatta tccgtggtac cactaattaa ttggcctgat      5760
     tcttgagtga gggaaggtca atagtgagga aggtgactgc tccgtaaata gtccatttgg      5820
     agcagattcc tgaatcctat tgcgtaattc ccgaatcgag gagggaatca ggaccagaat      5880
     aggggaatgg tgtctgtaat gaaccacccc aaatgaatgc attcaactag gtaatcgatt      5940
     gttttaattt gtttataaat gttaaattgt tttaaaaatt ttgttttgta tatgtccaaa      6000
     ttttttgaaa aatttctatt aaatagctcc attatgcaca ttatgcagtt aaccaactcg      6060
     tatgcaacat cgttaacaac tttttgaaag tgcattatga gcagttaacg atgcagtgtg      6120
     tgatgtgaaa gtatgagtgt gcaacgaata atgaatggcc tccttatgat cactttcgta      6180
     gtccttgtaa gaaaccttaa aacttatgtc ctttgtcagt cacttcacag aatgtccagt      6240
     cacttttgtc acagtttttg gcttgttata cttacctttt tacaattagt catgcaatcc      6300
     tgactgatga tcttttagct aaaatcttta aaatattagc aattttaaga aaaaactatc      6360
     aaaatgatca actggccaaa attattcttc gacatgtcgt caaaatgata caaaaatctt      6420
     aaaattgcac aaaatttcac agattttagc caaaaaatcc agcaccacca tcattccgtc      6480
     ttcaccatag cacgttttac catttgtagg cacaatagag ttgacagttt ggttgttcat      6540
     agtcattcgt acgcgcacac tgataagaac cgataacgtt gtattatagc cacagttgat      6600
     tctcgctgat aggctaactc cgacatagcg aaacgttagt gaaatttttc ataccgtact      6660
     ctagagtaac tttgtaaatt ttgtaaatat tattccggaa ttctttattt attaccatgg      6720
     tatatattta tattttgcat gataagctga aaagaaaatg catgttttat cagtattttt      6780
     aatccttttt aatttgttca atttagttkt atttgtatat attttatttc gttttgtttc      6840
     aatgttggtc ccgaatatat gtacagtcaa atgggttcgc tggagaccgg aatcgtaaga      6900
     tgttgatggt cagtaggagg ctcaagcctt gaaacagagt ggagttggaa aaccaacgat      6960
     gaaaacttat gaccccgacc caaaacttga ttgatactaa aaaaaaaaac gctacttttt      7020
     ccctagctta cagctttgat tcggtatttc tgaatgggtt tgagattttc aggagtcaaa      7080
     ttgtgttaaa aaaagagtgt gtgagtaagt tttgttttgt tagtgaaaat tttggttcag      7140
     aggtacgcgt cacaaagttg ttgttcttgt gtattaaaat gaaaaaaaat ctcggcttca      7200
     ccgaattttt tttaacccga gcggggggag ag                                    7232
//
ID   Gypsy-359_AA-LTR repbase;    DNA;    INV; 1134 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-359_;
KW   Gypsy-359_AA-I; Gypsy-359_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1134
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1134
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 218-218 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1134 BP; 315 A; 242 C; 315 G; 236 T; 26 other;
     tgtaaccagt ggtgtgttga agtgtccaag atttgtgaga ctatcgtgat tttgtgtgtc        60
     gttttgttaa aaaaaccaat accaagaaag cattaaatta twcaaaactg gacaccwccc       120
     aactcccact gtgaagaacg cagccacatc attagttccg ctactcacca ccagscgtca       180
     caggagcata aggatgggcg gccattgtgg gtggtgtaaa gggggccatg atggggcgaa       240
     tatggatggg cggaaaaatg cttcaacggt cgcgatcgtc gatawstamc cgccatcgca       300
     aagatcatta agwctgcagc awtcgmaaga wwamgacgtg catacwagtt gmtgctaaag       360
     cmmaaaagtt aaagwgaaat ttaaaataag ttgtgkaaag tggwasaagc gacattggaa       420
     ttacatccag gtaatccgtt aaccattcca atccaggcag ccctcatatt aatcgtcaaa       480
     aacccatcat atttccgccc cttgacccac caggaccccg tagttcacaa ttagttttac       540
     ctgtaatcta cgccggagct tatcctgagt ttggccttgg gccggagcct gcgttcgccg       600
     aagtcgccgg aagggtatcg tggtctctcg gattggccat acctaggagt tggcccagag       660
     tagaaccgtg cgcctctccg tagaaggcca tcgtgagccg ttagacgcca ccaggcgcgg       720
     ccattttgta aacggcctga aggccagsat tcgaaggkcc aaagtgccca acgaagtcgt       780
     gcaaaaggcc gcaagctgaa atggactgtg cggaggagtg ggaagcscgc cagcagtcca       840
     gccggataga ggagaaccgc aggaggagmt gaggtgaagt agcgggacga gaagaagggg       900
     ccccgccaat agtgaagaag aagggaataa gtgaggtagg agatagcctt taagaaagtg       960
     ggagaaataa aggtacctga ttgtgcgaag attggaaata aagtgggttt gtgttcagca      1020
     amggtaattt agtgtgttct tggtcgcgat agtcaagcgc gtacgccgac cctgaggcaa      1080
     ttgtakagag gggagtctca ccagtgctgg gcagggatcg ccccattagt taca            1134
//
ID   Gypsy-35_AA-I repbase;    DNA;    INV; 5274 BP.
XX
AC   supercont1.299;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_AA_;
KW   Gypsy-35_AA-LTR; Gypsy-35_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.299; Positions   88177   82904.
XX
CC   Positions [4250-4717] - Integrase core
CC   'CTTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           991..2916
FT                 /product="Gypsy-35_AA-I_1p"
FT                 /translation="MDSSRAIPPFRCNEIEKTRLHKEWQIWKRSLEYYFEA
FT                 EDITDQKRKRAKLLHLGGPQLQAVFQSLPNSEKFAVVAVEKAYYDVAIQAF
FT                 DEFFQPGRQDVLERHNLRRMKQLEGERFAEFIMRIRQQIEECGVDKYEPEV
FT                 RKILTDIMLTDTIVEGCLSEELRKQILQKDRSVEEIEDIGKSLEGVQKQMK
FT                 DFVSSREGWKQQERVYGIQARRRYVSTRPKVPGDSRNKSKNPELQCFKCGF
FT                 YGHISTDTRCPARGKECKRCKKTGHFEARCRMQARGALPWKEETVEPKKIR
FT                 LVERAADQSVQESNAVEADKPSASTPPKTYYAFYAGNESNTVTCEIGGVEH
FT                 PMLVDSGAEANLITDVAWEKLKTAGIEVTSCVKGSDRVLRSYANNIPLTVL
FT                 GTFKATVRIGARSAEAEFFVIRGGQRSLLGDTTSKRLGILKVGLEIDQVVQ
FT                 RMEPLSKINGVSVHIHLDPDVKPIFQPMRRIPVALEEAVNNKLKELMARDI
FT                 IEEKKGPVSWVSPLVVVGKANGEPRICLDLRRLNEAVMRERHPMPVIDDFL
FT                 ARIGPNMIRSKLDVKDSFLQLELNEESRDAMVFLTARGLYRFKRMPFGLVS
FT                 APEVFQKTMDRILAGCEGTWWYIDDVYIEGKDKEEHDERVAKVG"
FT   CDS           3446..5239
FT                 /product="Gypsy-35_AA-I_2p"
FT                 /translation="MADASPIGLGGLLIQVDGSGKHRVISYASKSLTDTEK
FT                 RYCHTEKEALALVWCVEKFYIYLYGIEFEILTDCKALIFLFTPRSRPCARI
FT                 ERWVLRLQGFDYSITHIPGDQNQADVLSRLSTLKPVPFDQREEIMIREIMD
FT                 FAAHAVAVPWEKMVEATKSDSELQMVLTLMDQDRKHELPTEFRVFGNELCR
FT                 VGDILLRGDRIVVPKELRPRILKIAHEGHLGTTMMKSTLRLSVWWPKLDKE
FT                 VENFVKNCRGCILVSAPDAPEPMTRKQMPAGPWQEIAVDFLGPLPEGQWLF
FT                 VVVDYYSRFVEVVEMKSITAAETIRELSTIFGRFGIPTTMRADNGPQLSAE
FT                 CRELKQFCEEYDIELVNTIPYWPQANGEVERQNRTILKRLRISQELGKDWR
FT                 LELRKFLLAYHSTVHPTTGKSPAELMFGRRIRNKLPSIPGYKEDEEVRDRD
FT                 RIVKEKGKEYSDNKRKARSNQIEEGDYVYAKRQRKDHKLNTDFSSERFKVV
FT                 NRKGAEVTIKSTVSGVEYKRYVSHLKKAEDKAQEQERRSDLDNEAELLRRD
FT                 EVCRDEGYSGESAGDEQKASNGGESTVDTGAQVSDKRTRLAPKKFQDYVAY
FT                 "
XX
SQ   Sequence 5274 BP; 1633 A; 930 C; 1441 G; 1270 T; 0 other;
     tttggcgacg aggagaagta aaaaaggtat gtaaaatatt aaagaatgaa gtggagaaca        60
     acgattttat tttgcgcctc catttggctg gttgtatcaa aatggctgaa attcgttgaa       120
     aagcatactc aaaagtggga gaaagcttta atgtgggggg agatgtgaac cgaaataatg       180
     tgacaggtgg caaagctttc aatgacgaat gtatgctggt gtaaacagag tggaaagtgg       240
     acgagaagaa ggtgaaaaga taaaaagcaa aacaagaatg atgattcgct ctcaaatgag       300
     acatacaggg aacaaaaagc ttgaatgatt catattggaa ttctggtggt gatagcggag       360
     cataactgtg cgctgatgat ggtatgtgta tttggcagtg aaaagaaaaa aaaaaagaaa       420
     aactccagtt tgggaactgg ttgaaagctg ttgaaagtta gtctgattgg cctgattagg       480
     gaatcaggtg tgtaaggtat gagctgattt gggaatcagt atgaatcagt gcaactggat       540
     ggaaagcgtt gactggtggt agattctgat tttgggaaat cagtagagct gccgatttgg       600
     gaatcggtat gttgtgaaaa tgattgtagg tcgaaagctc gagtcagccg gttggggaat       660
     cggatgctcg aagaggatgc aaaacacaac gaaaacaaaa gttgttcacg atgagggata       720
     agaaacgatg cactatagga aatgggagta taataactgg tcaaaactaa taaaaccgat       780
     aataaacaaa gtgatacata agcgttttat ttattgcgta gaatctgcgt tctattttgg       840
     ggttaatgtc ataaacaatt tttcagtgat tcattttttt attgcactac tactaaatat       900
     aatcaacaga atattgagtt taaaaataaa aatgctcggt ctgggggagg taatatcatt       960
     gttttattat cttacttctg atgtttccag atggactcat cccgtgccat accaccgttc      1020
     aggtgcaacg agattgagaa gactaggttg cataaggaat ggcagatttg gaaacggtca      1080
     ttggaatact attttgaagc agaagacatt accgaccaaa agcggaagcg agcaaagctt      1140
     cttcacctcg gggggccaca gttgcaggca gtatttcagt cgttaccgaa cagtgaaaaa      1200
     ttcgcggtgg tagctgtgga gaaggcgtac tacgatgtgg caatccaggc atttgacgag      1260
     ttttttcaac cgggaagaca agatgtcttg gagcgccaca acttgaggcg aatgaaacag      1320
     cttgaaggtg aacgatttgc tgaatttatt atgagaataa gacagcaaat tgaggagtgc      1380
     ggcgttgaca agtacgagcc ggaagttcgt aaaatcctta ccgatatcat gttaacggac      1440
     accattgtcg aaggctgtct gtctgaggag ctgcgcaagc aaatcttgca gaaagaccgt      1500
     tcggtagagg aaatcgaaga catcgggaag tcgctcgaag gtgttcaaaa acagatgaag      1560
     gattttgttt caagtcggga aggatggaag caacaggaac gtgtgtacgg aattcaggct      1620
     agacggcgat acgtatccac gagaccgaag gtgcctgggg attcccgaaa caagtcgaaa      1680
     aatcctgagt tacaatgctt caaatgtgga ttctatggac acatatcgac tgacacgcgg      1740
     tgtccggcca gaggaaaaga atgcaaacga tgtaagaaga caggacattt cgaagcccga      1800
     tgcaggatgc aagctagagg tgctcttccc tggaaagaag aaacggtgga acccaagaag      1860
     atccgattgg tggagcgtgc tgcggatcag tcggttcaag aatcgaatgc ggttgaggct      1920
     gacaaaccct cagcgagcac cccaccaaag acatattacg ctttttatgc cgggaacgag      1980
     tcaaatacgg taacgtgcga aattggtgga gttgaacatc cgatgctggt ggactctggg      2040
     gctgaagcaa acctgattac cgatgttgct tgggagaaac ttaaaacggc gggaattgaa      2100
     gttaccagct gtgtaaaagg aagtgaccgc gtactgagga gctatgccaa caacattccc      2160
     ctaacggtac tgggaacttt caaagcaaca gtacgaattg gagcgaggtc tgcggaagct      2220
     gagtttttcg tgattcgggg aggtcagcgg tctctcctag gagataccac ctcaaaacga      2280
     ctgggaatac tgaaggttgg tctggagatc gatcaggtgg tgcaacgtat ggaacctctt      2340
     tctaaaatca acggcgtgtc cgtgcatatt catttggacc ccgatgtcaa accaatcttt      2400
     caaccaatga ggagaattcc agtggcgcta gaagaagcag tcaacaacaa gcttaaggag      2460
     ttgatggcga gagacataat cgaagagaag aagggcccgg tgagctgggt atctccattg      2520
     gtcgtagttg ggaaggcgaa tggggaaccg aggatatgtc tcgatttgcg aaggttaaat      2580
     gaagctgtca tgcgagagcg acacccaatg ccggtgatcg acgactttct ggcaagaatc      2640
     ggtccgaata tgattcgcag taagttggac gtgaaggatt cttttctgca gctagagttg      2700
     aacgaagaat caagagacgc gatggttttt ctgacggccc gaggattgta tagattcaag      2760
     cgcatgccgt ttgggttagt atcggctcca gaggtgttcc agaaaactat ggacaggatt      2820
     ctggcaggct gcgaaggtac ctggtggtat attgacgacg tgtacatcga aggcaaggac      2880
     aaggaagagc atgacgagcg ggttgctaag gtagggtaat tctggacaaa gggctaatgt      2940
     ttttttttta tctttttaat gaaccatttg aattggggtt gataattaaa taaactaggt      3000
     tttaaggttt ctgtcgttga tgagaacttc tattgcgtat ttttgaatat attcgaaatt      3060
     tattcaggtg ctagcgagac tgaaggcatg gaacgttaaa ctcaactggg aaaagtgcat      3120
     attcggggtt gctgaacttg agttccttgg acataagata actaaggccg gaatagtccc      3180
     atcggatgct aaagtggatg cgctagttgc ttttcggaga ccggagaact caaacgaggt      3240
     gcgcagtttc ctcggcttag ccaattatct gaatcgattc ataccaaact tggcaacgat      3300
     agatgccccg ttgagaaact tgactaggaa gggtactgct ttcgattggc tggtcgagca      3360
     tgaaactgca ttcagcaaaa tcaaagctat tttgtcagat ccttctacac taggattctt      3420
     ccgaaaagga gacagaacac tcgtgatggc cgatgccagc ccaattggat tgggaggctt      3480
     actcatccaa gttgacggga gtggtaaaca tcgggtaatc agctatgctt ccaaatcctt      3540
     gaccgacacg gagaagcgtt attgccatac cgaaaaggaa gcactagcat tggtttggtg      3600
     tgtcgagaaa ttttacatat atttgtatgg aattgagttc gagatcttga ccgactgtaa      3660
     agctttgata ttccttttta caccgcggtc acgaccatgc gctcggatcg aaaggtgggt      3720
     actccggctg caaggttttg attattcgat cacgcacatt ccgggcgatc aaaatcaagc      3780
     cgatgtgtta tcccgattgt ctacactcaa accagtgccc tttgatcagc gagaagaaat      3840
     aatgatcaga gagataatgg actttgctgc ccatgcggtg gctgttccgt gggagaaaat      3900
     ggtagaagct acaaaatcgg actctgaact acagatggtt ctaacgctaa tggatcaaga      3960
     cagaaaacat gagttgccta ctgagtttcg agtgtttggt aatgagttgt gcagagtagg      4020
     agacattctg ttgcggggag ataggatagt tgttcctaag gaactgcgtc caaggattct      4080
     caaaattgca cacgagggac acttgggaac cactatgatg aagtcgactc tgcggttatc      4140
     cgtgtggtgg cccaaattag acaaagaggt ggagaatttc gtaaagaact gccgaggttg      4200
     catactggta tccgcaccgg atgctccaga acccatgacc agaaaacaga tgcctgcagg      4260
     accttggcag gaaattgccg ttgactttct agggccactg ccggagggtc aatggctttt      4320
     tgtggttgtt gactattaca gccggtttgt agaagtcgtc gaaatgaaaa gtatcaccgc      4380
     cgctgaaaca atacgagaac tgtcgacaat atttggacgg tttggaatac ccaccacaat      4440
     gagagctgac aacggaccac aattgagcgc agagtgcaga gagctcaagc agttctgcga      4500
     ggaatacgac attgagttgg tgaataccat cccgtactgg cctcaagcaa acggcgaggt      4560
     agagcgccag aataggacca tcctgaaacg cctacggatt tcacaggagc ttggtaagga      4620
     ttggcgtttg gagttgagga aatttcttct ggcgtaccat tctacagtac acccaacaac      4680
     tgggaaatcg cctgcggaat taatgttcgg gcgaagaata aggaacaagt tgccatcaat      4740
     tccaggatac aaagaggatg aagaagtacg agatcgggac agaattgtca aggagaaagg      4800
     gaaagagtat tcggacaaca aacggaaagc gcgtagtaat caaatcgagg agggggatta      4860
     tgtgtatgct aaacggcaga gaaaagatca caaactgaac acagattttt cttcagagag      4920
     gttcaaggta gttaatcgaa aaggggcaga agttacgatt aagtctacgg tatcaggtgt      4980
     cgaatataag cgatatgtat cacatctaaa gaaagcagaa gataaagcgc aggagcagga      5040
     gagaagatca gatctagata atgaggcaga gttattgagg agagacgaag tttgcaggga      5100
     cgaaggatat tcaggagagt cagcaggtga tgagcaaaag gcttcaaacg gaggagaatc      5160
     aactgtggat acaggtgctc aggtatcaga taagcgaaca cgtttggctc cgaaaaagtt      5220
     ccaagattat gtagcatatt aaatctgtaa aaaaaaaata gaagtgaagt ggga            5274
//
ID   Gypsy-35_AA-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   supercont1.299;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_AA_;
KW   Gypsy-35_AA-I; Gypsy-35_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.299; Positions   82903   82684.
XX
SQ   Sequence 220 BP; 77 A; 27 C; 64 G; 52 T; 0 other;
     tgtagggatt tactactact atgacaacag aaatgagatg aacctgaaag tagattacct        60
     tgggaggtag ctgggtggga gaaggaaaga tgacggggat tagtgacggg catgagacgg       120
     tgtgtagagg gagaaattga acaagtgaaa taaaatcgaa gtgtgacttg taaaccagaa       180
     tttaaaataa tttattcagt gtccggagct gcccattaca                             220
//
ID   Gypsy-35_AnFu-I repbase;    DNA;    INV; 5914 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5914
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2919-2919 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1011..2180
FT                 /product="Gypsy-35_AnFu-I_1p"
FT                 /translation="MSKIEDKLFHLRLIEHKLRNLPKNFRSCTISKYRILA
FT                 TELLTSIQADLIELEETISESYLIKINGKTNQCFSAIEFVINNYRTSNLNE
FT                 SQKSLTTDKMAHFDIKTATSLVQIYNGSPENLDIFIDSVNLLKEITPTDQM
FT                 IMLVKFIKTRITGKARIGLPPEIVKVDEIIENIKSRCEEKTNPEKVINQLK
FT                 TIQTRQTTKICEEVEILTCKLKGLYLEQKIPEKVANEMAVKVGVDTLVDKI
FT                 NNSETKILLKVGQYSTISAATQKVLENETSSNNSAQVLSFQRNNRYQSFSS
FT                 NNYSRFPSNRFNTRFQANRNFRGNNRFLSNTNTYRNNRNTYTPNRNRNNNS
FT                 NLNRNPWQPNQDRRQNTQSNNQRERRIFTAETEEEEENNFLDQSRQD"
FT   CDS           2156..5842
FT                 /product="Gypsy-35_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFRPIPAGLKHLPVMTLNLSAENSTTIKVEKAKSTHS
FT                 TLFIDTGAAVSLFKIGKIKTQHEINNRNKVKLTGITNNSLVTYGTISSNLI
FT                 FQNGTVNHTFHLIPDVIEIEADGILGRDFFTKYKCKIDYEYYLLNFELNGI
FT                 SFSHPIEDNTFLVPARSEIIHKISPKNIQVDSVVHAQEIKPGIFCANTIVS
FT                 KDIPYVKFINTTEIDTIINMKFFKPIIEPVDNFNIYNFSRNKNSKQRAQEI
FT                 LSKIELRNYSNPIKEEISKLVNKYSDLFCLSEDPITTNNFYKQSIIPKDNI
FT                 PTYIPNYKQIHSQGEEIDRQVNKMLDNKIIENSVSPYNSPILLVPKRTGND
FT                 KKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGNAKYFSTLDLMSGFHQI
FT                 PLEKASRKYTAFSTTKGHFQFTRLPFGLNISPNSFQRMMAIAMAGLTPEIA
FT                 FIYIDDIIVIGSSMKNHIENLTQVFNRLRDYNLKLNPEKCKFFKSEVTYLG
FT                 HKITDQGIYPDESKFDTVRKFPVPTNAEEVRRFVAFCNYYRKFIQNFAKIA
FT                 KPLNDLLKKGATFVWKKEQQIAFDALKKHLLSPTILKYPDFTKEFIITTDA
FT                 SNFACGAVISQITNGKDLPIAFASKTFTKGEKNKSIIEKELAAIHWAVNHF
FT                 KPYVYGRKFVIRTDHRPLVYLFGMKNPSSKLTRIRLDLEEFDFTIQFVAGK
FT                 SNVAADALSRIVYNSDELKELIPKVKDEDMQKIKKNSILVVNTRSMAKAQK
FT                 KPKESAGNNKEKDVKQVFWKTDRPSEVNKILKIKSEVNNREIEIKVCSHNY
FT                 NKQLGKRIIPLNNSKGNNGSQEIELALLEICQIAKKFNRDKLAISVEDVLF
FT                 NYYSQTTIKEIADTAIFGFEIIMFNPPRWITSDKEKSKILEQYHAIPTGGH
FT                 IGQYRLYLKIREKFKWNNMKQDIKSYVQKCEICKISKVNRHTIEKSVVTST
FT                 PAKPFTIISIDTVGPLPKTVNNNRYAVTIQCDLSKYIVIIPIQNKEANTIA
FT                 RALVENFILTYGSFLELRSDQGLEYNNEVLSKIAEILKIKQTFATPYHPQT
FT                 IGALERNHRSLNEYLRAFTNEHHDNWDEWIKFYEFVYNTTPHTDTKYTPYE
FT                 LVFGRTANLPQEIYKHKIDPIYNIEQYYNEMKFKLQKSNEIARRNILIEKE
FT                 KRQNELNKRVNPIAISIGDLVYLKNENRKKLDPLYIGPFIVTKIEDPNCTI
FT                 KNKQTLKQTTVHKNRLIKN"
XX
SQ   Sequence 5914 BP; 2510 A; 956 C; 934 G; 1514 T; 0 other;
     tggcgaccgt gacactgagc cacgaagcaa cacgaaaaac cgatactagg taaatgacgt        60
     atcgcgaaaa taactaagtt ggacgccgta agtagacact gtgttaagcg aaccgttaat       120
     acgcaagaaa acatagtgca tgtattggac aaaggtgaaa aatatgtagt atattcggca       180
     ttacaagatc cgtaaaaaaa aaaaaggaaa acaaacgatg tgatgcacat tgcatatata       240
     ccgacgtaaa ttagagtgac caaagtggta tagatgtacg tttcgacaag aatagtactc       300
     ttcactaata caatcagaag agatgcgtaa tacgcaacgc gattcacata cgcaaagtac       360
     cgttaaaagt ggagtacgaa aatcgctaat tgccgtgaca ctaacacagt gaaaactcac       420
     ctcggaacta aaagtgcaca tgcgaatcat cccaggataa aagtgcatca ccaatacaag       480
     ctaaaagtga aaaaataata agccagcagc aacagaaaga cacatacagt gatacacaga       540
     ttccaaaata ctcagccgat aagtgcaaca cactatttgt gaccgttaac ataagtgcac       600
     agactgaacc agtgtgaaac agcagcagca tctttaaaaa tcatcactaa acactacgcg       660
     aggaaagcgt tacgaacgag aacactacgc gaggaaagcg taacgaacga gaactacacg       720
     ccgagcagca gtagcagtaa agtaaagcag tagccgccat tgcagtatac acgtgaagca       780
     gctgtcaaac aacacagcgg taatcccgaa ggacacttaa acgataagta ttagacagta       840
     aggtattgta aacaaatact atgggattta tacataaata tatgatcaaa atttaaaaaa       900
     aaaaaaattc acaaaaattt tcattggact atagatgtta cttaattgtt atttattttg       960
     taaatattat ttattggatt tataaaaaaa aataacacta ataataattc atgagtaaaa      1020
     tagaagataa actttttcat ttaagactaa tagaacataa gttgcggaac ttgccaaaga      1080
     acttcaggag ttgtacaatt agtaaataca gaattttggc aacagaactt ttaacttcaa      1140
     tacaagcgga tttgattgag ctcgaagaga ccataagtga aagttattta ataaaaatta      1200
     atggtaaaac taaccagtgc ttctctgcaa tcgagtttgt aatcaataat tatcgaacat      1260
     caaatttgaa cgaatcacaa aaatcactta caacagacaa aatggcgcat tttgatatta      1320
     aaactgctac atctcttgta caaatttaca atggatcacc agaaaatctt gacatattta      1380
     tagattcagt aaatttactc aaagaaatta ctccaactga tcaaatgata atgctagtaa      1440
     aattcatcaa gacacgaatc acaggaaaag ccagaatagg attaccacca gaaatagtaa      1500
     aagttgatga aataatcgaa aacatcaaat ccagatgtga agaaaaaact aatccagaaa      1560
     aagtgattaa ccaattaaaa accatacaaa caagacaaac cacaaaaatt tgtgaagaag      1620
     tcgaaatttt aacatgtaaa ttgaaagggc tctacctgga acagaaaatt ccagaaaagg      1680
     tagcaaacga aatggccgtt aaggtaggag ttgatacact cgtagataaa ataaacaact      1740
     ccgaaacaaa aattttattg aaagtcggac aatattcaac aatttcagca gccacacaga      1800
     aagttttgga aaatgaaaca agcagtaata attctgctca agttttatca tttcaaagaa      1860
     ataacaggta ccaaagtttt tcttcaaata attatagtag atttccaagc aatagattca      1920
     atactagatt ccaagcaaat agaaatttcc gtggcaataa cagattctta tcaaatacaa      1980
     atacctacag gaataatcga aatacataca ctcctaacag aaatagaaac aataacagta      2040
     acctaaatcg aaatccatgg caacctaacc aagataggag acaaaacacc caatccaata      2100
     atcaacgtga acgtagaata ttcactgccg aaacagaaga agaagaagaa aataattttt      2160
     tagaccaatc ccggcaggat tgaagcatct gccggttatg acattgaatt tatcagccga      2220
     aaattcaact actatcaaag tagaaaaggc taaaagtaca catagtacat tgtttataga      2280
     tactggagca gcagtatcat tatttaaaat tggaaaaatc aaaactcaac acgaaataaa      2340
     caacagaaac aaagttaaac ttacaggaat tacaaataac tcactggtaa cgtatggaac      2400
     aataagttca aatttaattt ttcagaatgg aacagttaat catacctttc acttaatacc      2460
     agatgtaata gaaatagaag cggatggaat tctaggaaga gatttcttta ctaaatataa      2520
     atgtaaaata gattatgaat attatttgct aaattttgaa ttaaatggaa tttcattctc      2580
     tcatcctata gaagataata catttttagt cccagcaaga agtgaaatca ttcataagat      2640
     ttcaccaaaa aatatacaag tagattcagt agtccatgca caggaaataa aaccaggaat      2700
     attttgtgcc aatacaatag tttctaaaga tatcccttac gttaaattca ttaatactac      2760
     tgaaatagat acaatcataa atatgaaatt tttcaagcct atcatagaac cagttgataa      2820
     ttttaacatt tataatttct caagaaacaa gaatagcaaa caaagagcac aagaaattct      2880
     aagtaaaata gagttaagaa attattcaaa tccaattaaa gaagaaataa gtaagctagt      2940
     taacaaatat tcagatttat tttgtctaag tgaagatcca attactacaa ataattttta      3000
     taaacaatca atcattccta aagataatat tcctacatac atacctaatt ataaacaaat      3060
     acattctcaa ggtgaggaaa tagatagaca agttaataaa atgttagata acaaaattat      3120
     cgaaaattca gtttctccct ataattcacc aatactactt gtccccaaaa gaacgggcaa      3180
     tgataaaaag tggagattag tagtcgattt tagacaatta aataaaaaga tacttcctga      3240
     taaatttcca ctccccagaa tagacacaat actggatcag ttaggaaacg caaaatattt      3300
     tagtaccctt gatctgatgt ctggattcca tcagatacct ttggaaaaag cttctagaaa      3360
     atatacagca ttttctacaa caaagggtca ttttcaattc acaagattgc ctttcggact      3420
     caatataagt ccaaacagtt ttcaacgtat gatggcaata gccatggctg gccttacacc      3480
     tgaaattgca ttcatttaca tagacgatat tatcgttata ggaagttcaa tgaagaacca      3540
     catagaaaat ctcacacagg tatttaacag attaagagat tacaacctaa aattaaatcc      3600
     agaaaaatgc aaattcttta agtcagaagt cacatattta ggacacaaaa ttacagacca      3660
     gggaatatac cctgatgaat cgaagtttga tacagtaaga aaattcccag taccaacaaa      3720
     tgcggaagaa gtgagaaggt ttgttgcatt ttgcaactat taccgaaaat tcatacaaaa      3780
     tttcgcaaaa atagcgaaac ccctgaatga tttattgaag aaaggtgcaa catttgtatg      3840
     gaaaaaggaa caacaaatag cgtttgatgc attaaagaaa catctgttat ctccaaccat      3900
     tcttaagtac ccggatttca cgaaggaatt tataataact acggacgcat caaattttgc      3960
     gtgcggagca gttatttctc aaatcacaaa tggtaaagat ttgccaattg cattcgccag      4020
     taaaacattc actaagggcg agaaaaataa aagcattata gaaaaggaat tagcagcaat      4080
     acactgggca gtaaatcatt ttaaaccata cgtttatggt cgtaaatttg ttattagaac      4140
     agaccataga ccgttagtat atctttttgg tatgaagaat ccatcatcaa aattaacgcg      4200
     aataagatta gatctcgaag aattcgattt tacaatacag tttgtagcag gaaaaagtaa      4260
     cgtcgcagca gacgcattgt caagaatagt ttacaattca gatgaattga aggaattaat      4320
     cccaaaagtt aaagatgaag atatgcagaa gataaagaaa aattcaattt tggtagtaaa      4380
     tacacgatca atggctaagg cgcaaaagaa gccaaaggaa tcagctggaa ataataagga      4440
     aaaagatgtt aaacaagtat tttggaaaac ggatagaccg tcagaagtta ataagatttt      4500
     gaaaataaaa tcagaagtaa ataatagaga aattgaaata aaagtatgta gtcacaacta      4560
     taacaaacaa cttggtaaaa ggattatccc tcttaacaat tctaaaggta acaatggaag      4620
     tcaagaaata gaacttgctc ttctagaaat atgccaaatt gctaagaaat ttaatcgaga      4680
     caagttagca atatcagttg aagatgtact attcaattat tattctcaaa caaccataaa      4740
     ggaaatcgca gacacagcaa ttttcggttt tgaaataatt atgttcaatc caccaagatg      4800
     gataacgagt gacaaagaaa agtcaaagat tttggaacag tatcatgcca tacccacagg      4860
     aggtcatata gggcaataca ggttatattt gaagattcgt gaaaagttta aatggaataa      4920
     tatgaagcaa gatataaaga gttacgtaca gaaatgtgaa atttgcaaaa tcagcaaagt      4980
     taatagacat acaatagaaa agtcagttgt aacatcaaca ccagcgaaac catttacaat      5040
     aatatcaatt gacacagttg gaccattacc taaaacagta aataacaaca gatatgcagt      5100
     tacgattcaa tgcgacctat caaaatacat agtgatcata ccaattcaaa acaaagaagc      5160
     aaacactatt gcaagagcat tagttgaaaa ttttatctta acttatggaa gctttttgga      5220
     gcttagatca gatcaaggct tggaatataa taatgaagtt ttaagtaaaa tagccgaaat      5280
     cttgaaaatc aaacaaacat ttgcaacacc gtatcatcca caaacaattg gagctctaga      5340
     acgaaatcac agaagtttaa atgaatatct cagagcattt actaatgaac atcatgataa      5400
     ttgggatgaa tggataaagt tttatgaatt tgtgtacaat acaaccccac atacagatac      5460
     aaaatacact ccatacgaat tagtttttgg tagaacggca aatctaccac aagaaattta      5520
     taaacataaa atagatccaa tatataatat agaacaatat tataacgaaa tgaaatttaa      5580
     gttacaaaaa tccaatgaaa ttgcaagaag aaatatatta atagaaaaag aaaaaagaca      5640
     aaatgaatta aataaacgcg taaatcccat agctataagc ataggagatt tagtatattt      5700
     gaaaaacgaa aataggaaga agctagatcc gctatatata ggaccattta tagttacaaa      5760
     aatagaagat ccaaactgta caatcaaaaa taagcaaact ctaaagcaaa caacagtaca      5820
     taagaacagg ttaattaaga actaattgaa taacgcaatt ctttccctca tatacattca      5880
     ctcaatctta cgttattctc aaaaacgggg gagg                                  5914
//
ID   Gypsy-35_AnFu-LTR repbase;    DNA;    INV; 580 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-580
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2847-2847 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 580 BP; 229 A; 108 C; 116 G; 127 T; 0 other;
     tgtagcatac aggttctaca cattgtaacg cattcgacag cgatgaacat ataggttcta        60
     cacattgtaa cgcattcgac agcgatgaac atttatagta ccgctgtaac aagaggtttg       120
     acacccttgt aaactaacgc gtgaatactg atcgtaagcg tataagaacg aatgaaaaga       180
     caatctaaca cattcatagt tacacttggg aaaatgagat aactaggaaa accactaacc       240
     caatacactt acagcagcaa taattgcgaa agtcacgtac gcacaaatga gtagaaaaag       300
     caggatagat aaataggttt aggtttagct aagcaggagg gctaaatacg cccataagga       360
     taatgcataa atttgcatat aaaaggaggc tcgcgcggag ccaagaaaca gtccaagtaa       420
     aaatagtcca tacatagagt ccaacgatct aaaagtgtaa aagtaaaaac tagtgaaata       480
     aataagtgct acaagtttaa aacagtaaga aacggtgttc ttatcttata taccgaagag       540
     gtaggatcaa ccgctacgca aggcgacacc gcatatcaca                             580
//
ID   Gypsy-35_CQ-I repbase;    DNA;    INV; 6004 BP.
XX
AC   AAWU01032713;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_CQ_;
KW   Gypsy-35_CQ-LTR; Gypsy-35_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6004
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 449-449 (2011).
XX
DR   Genome; AAWU01032713; Positions   25314   19311.
XX
CC   Positions [4925-5413] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           880..2100
FT                 /product="Gypsy-35_CQ-I_1p"
FT                 /translation="MTENLLEKTYEGLGVILKKISKNPNRKYRSKTLLTKL
FT                 DNAKSLYRIGLSEIEFLPEQKQAPLTKTLRFLQGEIITLINEKLEKHVEPL
FT                 SFRTLVNVIITLNRSYKKVKMASAAEIIQIASTLVPEYDGQGDKLKNVTSA
FT                 LAALTPLVTAATEPIAVQVVLTKLTKKARSTVGDNPANLAEIVTKLEAKCS
FT                 SSVSSETIIHKLNKTKQNGSLKKFIAEIEELADHLEAALLLENYSVDHAGN
FT                 IAHKTAIKTLREGLKNERTQLILEAGTFTRLSEATAKAMEVDDKSHNLNIF
FT                 FQQKNNRGRKFNRGGQHQQNNFQNGNNFNGNGNGNGNGNGNGNGNGDRGRS
FT                 SRGRGRGQHNQGHYNQNQNQGADRQVFVNRTENGQIPQQNNQVGGQRQQPN
FT                 QPNTTIAQTHNQQ"
FT   CDS           3233..5758
FT                 /product="Gypsy-35_CQ-I_2p"
FT                 /translation="MSGFHQIELEEESKKFTAFSSSNGHYEFNRLPFGLNI
FT                 SPNSFQRMMTIALSGLPPECAFLYIDDIIVVGCSINHHISNLENVFSKLRH
FT                 FNLKLNPAKCNFFGTDVTYLGHHVSDKGIQPDKSKYEVIQKYPKPENADDV
FT                 RRFVAFANYYRRFLPDFAKTAHPLNRLLRKNQPFIWSDICENAFPEIKNKL
FT                 LSPEILQFPDFEKQFILTTDASKISCGAILSQNHGDIDLPVCYASRTFTKG
FT                 ESNKFTIEQELVAIHWAIDHFKPYLYGRKFVVRTDHRPLVYLFSMKEPSSK
FT                 LTRMRLDLEEFDFTVHYVPGKSNVGADALSRVVIDIDELKQMYVHLVQTRA
FT                 RAKLHQQNQTKPSSVVEPDQLKIYESCNINDVYNLPKLEIVGIDTNAQTGI
FT                 KISIRDKRYRKELTPALIIPMPLSNTNDNLMEIIQNIDSQANKLGIDKLAL
FT                 ALTAEFSSLCDIQKFIHAYKVLATPKPNPITNQKSKQINLTLIFYKKQRII
FT                 NDPLEALRIIEYYHDSPIGGHVGSYRLWKKLKAYFEFKNMQKLIKTFVEKC
FT                 VQCKMNKHSTKTNEIYTKTSTPHSVFETISIDTIGPMTKTQNGNRYALTMQ
FT                 CDLYKYVIVVPIQDKQAQTLAKAFIENLILVFGCPKNIKSDLGTEYKNEVF
FT                 GKISQFLQLNLKFSTAYHPQTIGNLERNHRCLNEYLRSFTNELHDDWDSWL
FT                 TYYCFCYNTTPNTDMQYTPFEIVFGKQANFPTYTLNNIEPMYNHEEYYTQL
FT                 KFKLQTIAQRVRDIIIKTKLKRIQNQKSSNPINLKVGDKILIKSETNRKLD
FT                 NIYEGPYTIVSLNHPNITIFHTPSNKNKEIHKNRVIKYAI"
XX
SQ   Sequence 6004 BP; 2315 A; 1126 C; 1012 G; 1551 T; 0 other;
     aggctacatg gcgaccgtga gcagcggctc ggacgcaacg cgccgcgatt tttaattcct        60
     ttttttttct cgggactttg taaaaaaaag tgaagtgaac tctaagtgat acacaaaact       120
     ttaccagtga aaatggaaag agaaatcacg cgaatcgaac tgcgagattg cttgtgtctc       180
     aagctcggaa tgcttgaaca atttccggag ttaaaacacc aaaaagcagt tgaaaaaatt       240
     cggaaaatga tagacacgag attctatcta aacaatttgg ctttacaacg agctctagga       300
     atacttcgtt ggatcgcgaa ggaaaatcgc aaattgtacc aacaagtaca gtaaatatgg       360
     aaaccattaa aataacagta aacagattga acactacatc agtgccaatc atcgcaagaa       420
     cgaatttaaa atgtgtcaaa ggccggattc agtgcctcgt aaaatgtgaa cttttaacaa       480
     tactgagaaa ctatgaacaa tcggtgttag tggaaaaaac aaaaaaataa taagataagc       540
     gccgccgcga atgactaaga gccaaaagaa gatcttttac gaaaaagaac gccaacgatg       600
     gaatcggcta agggcagccg accagcagca acaacagcag cagcagcagc agcagcgaaa       660
     ccaggtgcag ccgcgccagg aaataaacaa ccgtaaaggg gagcgcgtta ttgtttaacg       720
     gatgcatatc cttacgcggt gttttcgtca atcttcaaga aggggagcgc acataagtgg       780
     ccgcataccc gaatcatcaa tcttcaagaa ggggagcaca caacagagat tgcatacccg       840
     ctataatctt catttaaatg tataagataa gtaatctaga tgacagaaaa tttattagaa       900
     aaaacatatg aaggtctggg ggttattcta aaaaaaattt caaaaaatcc gaatagaaaa       960
     tataggtcta agaccttatt gacgaaatta gataatgcga aaagcttata tcgcatagga      1020
     ctttcggaaa ttgaattttt gccggagcaa aaacaagctc cgttaacaaa aactttacga      1080
     tttctccaag gagaaatcat aacattaata aatgaaaagc tcgaaaaaca cgtcgaacca      1140
     ctttcattta ggacactagt taatgttata attacattaa acagatcata taaaaaagtt      1200
     aaaatggcaa gtgctgccga aatcattcaa atagcttcta ccctcgtccc tgagtatgac      1260
     gggcagggag ataagctaaa aaatgtgaca agtgcactag ctgcattgac accactcgtc      1320
     acagcagcaa ctgaaccaat cgcagttcag gttgtgctga caaaattgac gaaaaaagcc      1380
     agatcaacgg taggtgacaa ccctgctaac ttggctgaaa ttgtgacaaa actggaagct      1440
     aaatgctcca gttcggtttc atccgaaaca ataatacaca aattaaataa aaccaaacaa      1500
     aatggttctt tgaaaaaatt tatcgcagag atagaagaac tagctgatca tttggaagca      1560
     gctcttctac tcgaaaatta ctctgttgac cacgcgggga acatagctca taaaacggct      1620
     attaaaactc tgcgtgaagg tctaaaaaat gaacgcactc agttaatttt agaagcgggg      1680
     acgttcacga gattatctga agctactgcc aaagcaatgg aagtagacga taaatctcat      1740
     aatttaaaca tatttttcca gcagaaaaat aatcgcggaa gaaaatttaa tagaggaggt      1800
     caacaccaac agaataattt tcaaaatgga aataatttca atggtaatgg taatggtaat      1860
     ggtaatggta atggtaatgg caatggcaat ggtgacagag gacgttcttc tagaggaaga      1920
     ggtcgaggtc aacataacca aggccattac aaccaaaatc aaaaccaggg ggctgatcgt      1980
     caagttttcg tcaacaggac ggaaaacggt cagatccccc aacagaacaa ccaggttggg      2040
     ggacaaagac aacaaccaaa ccaaccaaac acaacaattg cccagactca caaccagcaa      2100
     taaagcggtt ttttacagcc agcaataatt taagtaattt tattaatgta aaattagata      2160
     tatcagacgc caaatgtaca tttttagttg ataccggcgc tgaaatatcc ttattaaaaa      2220
     ttacgaaact ttttggatcc actccaatgg actccgaaaa taaatgcacc atatcaggta      2280
     tcaacgatga aggtattcat acgttgggaa gtacttatgg taacataatc ttagaaaaca      2340
     taaagatatc tcaagaattc caattaatca atgaggaagt aacaatcccc actgatggaa      2400
     ttcttggaag agactttctt acaaagtacc attgtaacat cgattacgat acatggttac      2460
     tttccggaac tgtcaattcg gaaaaatttg aattcgaaat aattgacaac ttggaaggaa      2520
     atacttatat tcctcctcgt tgtgaagtat ttcgaaaagt aaatttacca gataccaggt      2580
     ctgtgtattt aataaaatca catcagactg accgtggagt cttcatcgca aactccattg      2640
     tagatagtag ttttccatat gtaaaaattt tgaatactac taataaaaca gtaaagatca      2700
     ataaaaactt tactgaaaat atgaccaatg tcgacaattt tgacgcttat aactttggtc      2760
     acgaaatcaa aaataaacgt cataaaaaat tactgatgtc gctaaaactg gataaagttc      2820
     ccaaaaaagc taaagacaaa ttaatagaat tatgtcgcga atataatgat attttctctt      2880
     tagaaaatga tcatctcacc acgaataatt tctataaaca aaaaataaac ttggaagata      2940
     gtcgaccagt ttatattaaa aattaccgaa ctccagaagc acacattccg gaaacaaaca      3000
     aacaagtgca caaaatgcta aatgacggga ttataagaca ctcaacgtct cattataatt      3060
     ccccgataat gctagtgccc aaaaaaccga caatgacgag aaaaaatgga ggttggtagt      3120
     ggatttccga caattaaata aaaagattct cggtgacaaa tttcctttac caagaattga      3180
     tgaaatttta gatcatctag gtagagcaaa atatttcaca actttggatt taatgtccgg      3240
     atttcaccaa attgaacttg aagaggaatc aaaaaaattc acagcctttt ctagttctaa      3300
     tggacactac gaattcaata gacttccatt cggattaaac atttcgccca acagttttca      3360
     aagaatgatg acgattgctt tgagtggatt gccaccagaa tgtgcattcc tttatattga      3420
     cgacattatc gtcgtcggat gctcaatcaa tcatcacatc tcaaatctgg aaaatgtttt      3480
     ttccaaacta agacacttca atcttaaact aaatccagca aaatgtaact ttttcggaac      3540
     tgacgtgact tatttaggtc atcatgtctc agataaaggc attcaaccgg acaaatcaaa      3600
     atatgaagtg atccaaaaat atccaaaacc agaaaatgca gatgatgttc gaagatttgt      3660
     agcatttgca aattattatc gacgcttctt gccagatttc gctaaaacag ctcacccatt      3720
     aaatcgacta ttacgcaaaa atcaaccatt catctggtct gatatatgcg agaacgcttt      3780
     tccagaaatt aagaataaac tgttgtcacc agaaattctt caatttcctg actttgaaaa      3840
     gcagttcatt ttaacaacgg atgcttcaaa aatatcatgt ggagcaatat tatcccaaaa      3900
     tcatggagat attgacttac cagtatgcta cgcaagcaga acattcacta aaggtgaatc      3960
     aaataaattc actatagaac aggaactcgt tgccatacat tgggcaattg accattttaa      4020
     gccatattta tatggtagga aattcgtcgt tagaacagat catagaccac tagtctatct      4080
     gttctcaatg aaagagccat catcgaaact tactagaatg cgcttagatc tcgaagaatt      4140
     cgatttcaca gtacactatg tacctggaaa atcaaacgtc ggagctgacg cactttcaag      4200
     agtagttatc gacattgatg agcttaaaca gatgtatgtg catctcgtac aaacacgagc      4260
     gcgagcaaaa ctgcatcaac aaaatcaaac aaagccaagt tcagtagtag agcctgatca      4320
     actaaaaatc tacgaatctt gcaatataaa tgacgtctat aatctaccaa aacttgaaat      4380
     agttggtatt gatacaaatg cgcaaaccgg tataaaaatt tccattagag acaagcgata      4440
     cagaaaggaa ttaactccag cgttaattat ccctatgcct ctgtctaata ctaatgataa      4500
     tctcatggag attattcaga acattgactc acaggccaat aaactaggaa tagacaagtt      4560
     agctctagcg ctaaccgctg aattctcaag tttatgtgat attcaaaagt tcatacacgc      4620
     gtacaaagtg ctagccacac ccaaaccaaa tcctattact aaccaaaagt caaaacaaat      4680
     aaaccttacg ttaatctttt ataaaaaaca aagaattata aatgatccac ttgaagcact      4740
     aaggattata gaatattatc atgactcacc gataggaggt catgttggtt cttatcgcct      4800
     ttggaaaaaa ttgaaagcat actttgaatt taaaaacatg caaaaactaa tcaaaacttt      4860
     tgtagaaaaa tgtgttcagt gtaaaatgaa caaacattct acaaaaacaa acgaaattta      4920
     tacaaaaact tcaactcctc attcagtttt cgaaacaatt tccatagaca caattggacc      4980
     tatgacaaaa acgcaaaatg gtaatcgata cgcattaact atgcaatgcg atctatacaa      5040
     atacgttatt gttgttccaa tccaagataa acaagctcaa acacttgcaa aagcgtttat      5100
     agaaaacctc attttagttt ttggatgtcc caaaaatatt aaatcagatt taggaacaga      5160
     atacaaaaat gaagtattcg gtaaaatttc tcagttctta cagttgaatc tgaaattttc      5220
     aacagcttac cacccacaaa caattggtaa tttggaacgt aatcatcgtt gcctcaacga      5280
     atacctcagg tcattcacaa atgagttgca tgatgattgg gattcatggc ttacttacta      5340
     ttgtttttgt tacaatacta caccaaatac tgatatgcag tatacacctt tcgaaatagt      5400
     ttttggaaaa caagcaaatt ttcccacata cacactaaac aacatagaac ctatgtacaa      5460
     tcacgaggaa tactatacac aattaaaatt caaattacaa acaatagctc aaagagtacg      5520
     tgatatcata atcaaaacaa agctgaaaag aatacaaaac caaaaatcat caaacccaat      5580
     caatcttaaa gtaggagaca aaattttaat taaatcagaa accaatagaa aattagacaa      5640
     catttatgaa ggcccatata ctatagttag tctaaatcat ccaaatataa caatttttca      5700
     tacaccctca aataaaaata aagaaatcca taagaatagg gttatcaaat acgcaatcta      5760
     aaaataaaaa aaaaaaacct catccgagcc taacttcaac cgaagtaggt gaaagtttcc      5820
     cggcaatagg ccatggaagt gaataattcg gaaataacaa aaaacaggaa gattttgttt      5880
     atatacacaa gattgtaaaa ggcaactgga gaatggtaaa gaataatttt tacttcataa      5940
     aaatcattct tcttttaggg ggaaggtgtg ataggttacc atccctgcac gggtttacca      6000
     accc                                                                   6004
//
ID   Gypsy-35_CQ-LTR repbase;    DNA;    INV; 489 BP.
XX
AC   AAWU01032713;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_CQ_;
KW   Gypsy-35_CQ-I; Gypsy-35_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-489
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 450-450 (2011).
XX
DR   Genome; AAWU01032713; Positions   19310   18822.
XX
SQ   Sequence 489 BP; 150 A; 119 C; 102 G; 118 T; 0 other;
     tgcatagcta attagttgca acccatcatt tactgcttca cacttcaatt ttaatttatt        60
     gccctgcccg gctgagtgag ccacacacag ccaggcccag gactcaaatt acataacaat       120
     cggttcaata tgcgctggca taactgctgt gcttgcgcat gggactgttt cgggttgtac       180
     aatttttcgg gttttacggc aaagtggcca tgcgctggat aatgctgatc cagcgcaaag       240
     gacacttcgg gccataaaca aagagagcca actccagatg tctccaatga gtaaactcta       300
     caaatacgat gtaagaaatg taaccaaact catataaagg gccaggagcc accaaataaa       360
     gagattcatt cttagaacac agaccagaac tgtacagttt agggatcgct cccaagccag       420
     gcttgaggac accgatctac ttcggatgac agcctatggt ccaaaattct aagacccttg       480
     aagtaatca                                                               489
//
ID   Gypsy-35_DAn-I repbase;    DNA;    INV; 5505 BP.
XX
AC   AAPP01015669;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DAn_;
KW   Gypsy-35_DAn-LTR; Gypsy-35_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5505
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015669; Positions  208483  213987.
XX
CC   Positions [4570-5061] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           689..2161
FT                 /product="Gypsy-35_DAn-I_4p"
FT                 /translation="MGIDRSPDKGAANSSNSCCPICNAEVNAAEVYVTACQ
FT                 HEFHRKCIEAHWKKSLQCPVCKAVCRPKGVKVTEDPERRTRSQSRNQPIPD
FT                 NVGRLTTDDIATTSGSNPISSNESSISANATTLLAMERRLLESLSGKMAEL
FT                 IQNSVADVLTRTLATQNHSSGMSHPCLPPSEESLQNRIDLENSRIPGRDHT
FT                 LSPRSQNSQGSNTSDLLNRPDKVVHILNGWKIKYSGKGVSVDNFIYRVEAL
FT                 TRETLGNNYTVLCRNASVLFEGKANEFYWRYHKAHGEVQWDSFCSALRLQF
FT                 RQVRDDGDTEEIIRNTKQKPNESFDSFYDTVSGLVDQLDHPWIQQKLVRVI
FT                 KNNLRPEIRHEILNLDIQTVSELRGVCRRREAFMDEVKRSQGYSRSTPFKR
FT                 DISEFGEGYDVPETEQSDDEAGIEAFSLLCWNCRKEGHRYQDCISDRRVFC
FT                 YGCGAPNTYKPNCSKCSKNFQAGTSKSQFRPKAPSAVRSQATMTEK"
FT   CDS           4027..5430
FT                 /product="Gypsy-35_DAn-I_3p"
FT                 /translation="MSNQDLSTRLARWALSLQRYKFKIEHRKGSLNLVPDV
FT                 LSRVNEEVIAALDLRDGLLLDLSSEHFRSGEYTDLVNKVKANETNFPDLKT
FT                 EGGFVYRKAEHLTGDRMHDEFAWKLWVPKELVPEILAKAHDSPLSSHGGIH
FT                 KTIERVRRYYFWPGLVPDVKAYVNACEVCRTTKPSNCVLRPPLGKAPESHR
FT                 FFQRLFMDFLGPYPRSRSGHVGIFIVLDHFSKYVFLKPVRKIDTSTVVKYL
FT                 EEELFLTYGVPETVVSDNGSQFRSHAFGKLLEQYRVTHTFTAVHSPQANAS
FT                 ERVNRSVISAIRAYIRPDQRDWDENLSKKCCSLRSARHSSLGTSPYYMVFG
FT                 QHMITSGTTYSLLRKLNLLDDRALKLDRQDSLEVARENASRLMQRKHDENE
FT                 KSYNLRSRNVTFKEGQEVYRRNFRQSCFQSGYNAKFGPSFVKCRVRKKLGS
FT                 VYYELEDLQGKLIGTYHAKDIKQ"
FT   CDS           join(2299..3063,3067..4011)
FT                 /product="Gypsy-35_DAn-I_1p"
FT                 /translation="MQRSRSSRRVSQFWGRVKEVKQGLQYINSLPAGSSDP
FT                 RPFVPVKFLNRTVYGLLDSGASISCVGGNLAEELKTSIKYKVIACSASTAD
FT                 GRAQQIIGYCKVEVEYGEVKKLMKIYIVPSLKQDLYLGIDFWKLYDLLPRK
FT                 LMISELGSTEVNPKLNVDQHILSEVDKAKLMNVINCFPSFAQEGLGRTNLI
FT                 THTIEVGKAKPIKQRHFPVSPAVEKAMYSEIDRMLELGVIEESESSWSSPI
FT                 VMVTKPGKVRICLDRKVNSFTEKDAYPLPQISGNLSRLPNAEYISSLDLKD
FT                 AYWQVPLDVASRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPA
FT                 HLRNEVFVYLDDLLIVSSSFDRHLEVLREIALQIRRAGLTINIGKSHFCMH
FT                 RVRYLGHIIGDGGIRTDPEKVAAITNFPVPKSLRNLRSFMGLCGWYRKFVP
FT                 NFATLAAPLTDLMTTKRKFSLTDEALKAFEDLKRSLSEAPVLCSPDFEKPF
FT                 EIHCDASKTGVGAVLVQVSEEGDERPICFISKKLNKAQRNYTVTEQECLAA
FT                 IVALKNFRAYVEGQIFKIITDHA"
XX
SQ   Sequence 5505 BP; 1658 A; 1066 C; 1327 G; 1454 T; 0 other;
     tcccaaagat ctccaaatga ttattagtgt tcgtcactga ccaggattta aaaaaacaaa        60
     cgagaaattt ttctaaattt ggcagaaagg tccacaatgt gttggaacct gaggaaaaca       120
     gatatcgcga gcttagggtc gagttctggc ccgggctaag acacagtgtc accaatctat       180
     caatctctat cattctaaaa gcgaaatgaa tttcaccgta cggaatgtgg tggtactact       240
     ccagagtaat gccccatcca gaagttcata agcgtagaat ccttttggga ttacttgagg       300
     cttccgttat ggtcttttgg aatacatatg aatctgtcgg aaacaggtcg atggccaaga       360
     ccaaactaga aactgggaga agtaatctct ctagtccttg aaagaaagga gtaatgactt       420
     tactacttct aactaactat ctacttttat tttcctgaga agtcgaagaa aacaaatacc       480
     gtacaatacg tgtgacatct agcatcagtt caaacactct tttgattaga ttttttttct       540
     cttttgttgg tttagttgct gaaggcaacg tatccttaag taaaatattt ggtttgttag       600
     caacaagctg agcagcgaga ttttgataat tcttttttat tccttttgtt gataccttcg       660
     ttgtggaaaa gttaagattt ttgggaagat ggggatagac cggtctccag ataaaggagc       720
     tgcaaacagt tccaattcct gttgtccgat ttgtaacgcc gaggtaaacg ctgccgaggt       780
     ctacgtaacg gcatgccagc atgagtttca taggaagtgc atagaagctc actggaagaa       840
     gagtttacaa tgtccggttt gcaaggcggt atgcagaccc aaaggagtta aagtaacgga       900
     ggatccggaa agacgaactc gaagtcaatc caggaatcag cccatccccg ataacgtcgg       960
     gagactaacg acagacgaca tagctactac ttcagggtcc aatcccatta gcagcaatga      1020
     aagcagcatt tcggcgaacg ccacaacgct actagctatg gagcggagat tgctggagtc      1080
     actttcagga aagatggccg agttaatcca aaactcagta gctgacgttt tgaccaggac      1140
     attagcaact cagaatcaca gttcgggaat gagtcacccg tgtttacctc catcagaaga      1200
     aagtctgcaa aacaggatag acctagaaaa tagcagaata cctggaagag atcacacatt      1260
     aagtccgcgt tcccaaaatt ctcagggaag caatacgtca gatttgttga accgcccaga      1320
     taaggtagtg catatcctca acgggtggaa aattaaatat tccggaaaag gagtgtctgt      1380
     ggacaacttc atatatagag tggaagcact gactagggag actttaggaa ataactatac      1440
     ggtactttgc agaaatgcaa gcgttctttt tgagggcaag gccaatgaat tttattggcg      1500
     atatcataaa gcccatggcg aagtccaatg ggacagtttc tgttcagctt tgcggcttca      1560
     gtttcgtcag gttagggatg acggcgacac tgaggagatt ataagaaata ccaaacaaaa      1620
     acccaacgaa tcgtttgatt cattttacga caccgtgtca ggtctggtcg atcagttgga      1680
     tcacccgtgg atacagcaga agctagtgag agttatcaaa aataaccttc gtcccgagat      1740
     aaggcatgag attttaaatc tcgatatcca aacagtcagc gagttaagag gagtttgtcg      1800
     cagacgcgaa gcttttatgg atgaggtaaa gagatctcaa ggatactctc gaagcacgcc      1860
     tttcaaacgc gatatctctg agtttggtga aggttacgat gttccggaaa cggagcaatc      1920
     cgatgatgaa gcaggaatag aagctttctc cctgttgtgc tggaattgcc gcaaggaagg      1980
     tcataggtat caggattgta tatcggatag gagagttttt tgttacggtt gtggagcacc      2040
     gaatacttac aaaccaaact gtagtaagtg ttcaaaaaac ttccaagccg gcacgtcgaa      2100
     gtcgcagttc agaccgaaag ctccgagtgc cgtaagaagt caggccacaa tgaccgagaa      2160
     atagaagagg tagtgttggc aacctcaacc ccttccatcg acaaacagtg cactgatcca      2220
     ggtcctttgc ttcacagcaa aatactgagg ttacaggagg agaatatttc aggattgtat      2280
     cacaacccaa actttaaaat gcagcggtcc cgaagttcaa ggcgggtaag tcagttttgg      2340
     gggcgagtaa aggaggttaa acagggcctt cagtacatta attccttgcc agcaggatca      2400
     agcgatccgc gaccttttgt accagtcaag tttctgaatc gtactgtcta tggattatta      2460
     gattcaggag catcaattag ttgtgttggt ggtaatttag ctgaggaatt aaaaactagc      2520
     attaaatata aagtaatagc atgtagtgcc tcaacagctg atggaagagc gcagcagatc      2580
     ataggatatt gtaaagttga agtagaatac ggggaagtta aaaagttaat gaaaatttat      2640
     atagtaccct ctttaaaaca agatttatat ttagggattg atttttggaa actctacgat      2700
     ttattacccc gaaagttaat gatatctgaa ctagggtcaa cagaagtaaa cccaaagctc      2760
     aacgttgatc agcatatttt gtctgaagtg gataaggcca agttgatgaa tgtcatcaat      2820
     tgttttccgt cgttcgcgca agaaggactg ggtaggacga atttaataac tcataccatc      2880
     gaggtgggta aggctaaacc catcaagcaa agacactttc cagtttcacc cgcggtggaa      2940
     aaggccatgt actccgaaat tgataggatg ttagagttag gcgttataga agagtcggaa      3000
     agctcttggt catcccctat cgtcatggtt actaaaccag gaaaagttcg aatttgtctt      3060
     gactgaagaa aagtcaacag ttttacagaa aaggatgcat atcctcttcc tcagattagc      3120
     ggtaatttaa gtcgattgcc gaacgcggaa tatatatcga gcctcgattt aaaggacgcg      3180
     tattggcagg tgcctttaga tgtcgcttct cgggacaaaa cagcgtttac ggtaccggga      3240
     agacctctct atcaatttaa agtaatgcca ttcgggcttt gcaatgctac aagtaccatg      3300
     tctcgactca tggataaagt agtaccagca cacctcagga acgaagtttt cgtctatctc      3360
     gacgatttgt tgatagtttc ttcaagcttt gacaggcatc ttgaagtcct gagggaaata      3420
     gctttgcaaa ttagacgagc cgggttaact attaacattg ggaaaagtca tttttgcatg      3480
     caccgggtac gatatttggg gcatatcatt ggagacggtg gtatacgtac agaccccgaa      3540
     aaggtggcag caatcaccaa ttttcctgtt ccgaaaagtt tgcggaattt aaggagcttt      3600
     atgggactat gtgggtggta tcgcaaattt gtgccaaatt ttgcgactct tgctgctccg      3660
     ttaactgact tgatgacaac caaacgtaag ttcagtttaa ccgacgaagc gctgaaagcc      3720
     ttcgaggatc taaaacgatc attatccgaa gcgcccgttt tgtgtagtcc cgatttcgaa      3780
     aaacctttcg agatacactg tgacgccagt aagacagggg taggagcagt gttagtacaa      3840
     gtatctgagg aaggagacga gcgacctatt tgctttattt caaagaagtt gaataaggcg      3900
     caacggaact atacagtaac ggaacaagaa tgtttggctg caatagtggc actaaagaat      3960
     tttagggctt atgtcgaagg tcagatcttt aaaattatca cagatcatgc ctgattaaaa      4020
     tggctgatgt ccaatcagga tttgagtaca cgcttggctc gatgggcgtt atcattgcaa      4080
     aggtacaagt tcaagattga acatcgtaag ggatccctca atctggttcc cgacgtgttg      4140
     tctcgggtta atgaagaagt gatagccgcg ttggacttgc gagacggact acttttggat      4200
     ttgagctcgg agcattttag atcgggggaa tacacagatt tagtgaataa agtgaaggcg      4260
     aacgaaacta attttcctga ccttaagact gagggaggtt tcgtttatcg taaggccgaa      4320
     cacctaacag gagatcgcat gcacgacgaa ttcgcgtgga aactttgggt tccaaaggag      4380
     ttagttcccg aaatactagc gaaagcacac gacagtcctt tgtcgtctca tgggggcatc      4440
     cataagacca tcgaaagagt taggcgttac tatttttggc ctgggctagt gcctgatgta      4500
     aaggcttatg tgaatgcttg cgaggtatgc aggaccacaa agccatcaaa ttgcgtttta      4560
     cgaccgccct tagggaaagc tccagaaagc catcgatttt tccaacggtt atttatggat      4620
     tttctcgggc cttatcctag atcaagaagc ggccatgtgg gtattttcat tgtcttggac      4680
     catttttcga aatacgtttt cctgaaacct gttaggaaaa ttgacacaag tactgtggtt      4740
     aaatatttgg aagaagaatt gttcttaacg tatggagtgc cagaaaccgt agtgtccgac      4800
     aatggctctc agtttcgttc ccatgcgttt ggcaaattat tggaacagta tcgcgtaact      4860
     cacaccttta ccgcggtaca ttctccccaa gccaacgctt ccgaacgcgt aaatcgatcg      4920
     gtgatatcgg cgataagagc atacatacgg cctgatcaga gggattggga cgaaaattta      4980
     agtaaaaaat gctgctcgtt gagatcagca aggcattcaa gtttagggac ctcgccttac      5040
     tatatggtgt tcgggcaaca catgatcact tccgggacca cgtattcttt gttaagaaag      5100
     ttaaatttgt tagacgatcg agcgctgaag ttagaccgtc aggattcttt ggaagttgca      5160
     cgagaaaatg cgagtcggct aatgcagaga aagcacgacg aaaacgagaa gagttacaat      5220
     ttgcggtctc ggaacgtgac ttttaaggaa ggacaagaag tgtatcggag aaattttagg      5280
     cagagctgtt tccagtctgg ctacaacgct aaatttggac cgtcctttgt taagtgtagg      5340
     gttcgaaaga agctgggaag cgtgtattac gaactagagg atttgcaagg gaaattgata      5400
     ggcacttatc acgcgaagga cataaaacaa tagcgcctct tcactcggga tcagtctagg      5460
     gtaccaggat tagaataccc tagcctgaat gtttcggggg ggctt                      5505
//
ID   Gypsy-35_DAn-LTR repbase;    DNA;    INV; 2116 BP.
XX
AC   AAPP01015669;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DAn_;
KW   Gypsy-35_DAn-LTR; Gypsy-35_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2116
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015669; Positions  206367  208482.
XX
SQ   Sequence 2116 BP; 650 A; 404 C; 354 G; 708 T; 0 other;
     tgtagcggcg actgaagtca tttaaaaaaa aaaaaaaggg aaaaaacaaa caataaaata        60
     ataataaata aaaaaactaa aattgtaaac aaatacaatc gatatacata tcggttttgt       120
     aaattgggtt tttttaccga tagttaaagc gaagctttac ttcgggagtt gccaaattgt       180
     tgaggcgcgg gatcagctgc agcagggagg cttaggaaag ctgcaatatc agctgttctg       240
     catttccggt aacctaaatg gaatgtaggt tgttccatgc tcggtctttt ctttcgaaac       300
     cacccagaag tgcagacgcc caaatagtat ctctctgcaa gtgtaaattt tatcagcgca       360
     agagcagcgc aagtgcagtg ttcatttttt ttatttatca actaccaagt aagttgcaga       420
     tcatgcgtat gtttttttat ttacatgcat acgcttatct agatttgcaa cggtgataag       480
     ggcagcctaa gcctgtgttt gtgggttttt ttgtttttgt ttcgcggctt tataaaagcg       540
     cgacctcgtg gcggccttat caaaatttat caggtgaata tgaaatatgt tttctaatac       600
     ctccagggta cttattgtgg ccgttttaaa aattcaggcg gtccacctca aagcaccccg       660
     ggagcgcttc tggtggaggc tcccagttca ggagcggctt aacctcgatc gggtaatccg       720
     tctccccccc tcatcttcac caccatcttc atcatcatct tcatctccta atacattggt       780
     gccgggaaat taacactcag tggccggaaa attaaccgta gggatggtgt aaagaggatt       840
     tgcagaccca acgaattcaa gacccgttaa gtgaaaggcc gttgacccca ccagccatgg       900
     aataaggagc aaaagagaaa ttattaaaac cgctagccca gccgcccagc tccaaactcg       960
     tggcgatcat tttttttctc tcttttctca tctacatttc atcccccaat tcacatgcgt      1020
     tataaaaatg ttttaatttt attttctttt agtcaatagt tttagttata aatttaaatt      1080
     taaattaatt acaggctttt agtgaagtgg aaaaaaaaac ggaattggaa aatatgaaga      1140
     taatatttaa ttttttttaa actttcgcga acaaaatggt tgtcagttta attttaaatc      1200
     gtttaatttt aatcctcgtg cgaaaataag tttgttttaa aattctatgg tgtgcaaaag      1260
     cctcattaca ctcatttaca gcaacccaaa gcagagatcg atctttcgcc gatggattta      1320
     cagtgagtgg tctatttacc ttttacatat acactgtaaa aaaaattttt tgagtcccac      1380
     tgaattttaa tattatattt aatccattcc tccttcatct taacataaaa aaaaataaca      1440
     agagcacgaa tttcatttaa atgatttaac tgatgactaa tgaataccct atcctaatga      1500
     attttaaata ttatcatttt tttctaatac ctttattttg aaatttattt atccctaaaa      1560
     aaaaaaaaaa ccgatattta ctcaagccaa attttattat attatatata aacccatatc      1620
     tctttaaaca tttacattaa tttatattgt tttataaatc ttacttataa gctttcctcc      1680
     cgtattatta gaatatttgt ttatgcaagc aaacaattag gaataatgtc gaacacctct      1740
     ttagccttag ccaaattttt attagtttta aattgaatta aatctgtttt ataatgaatt      1800
     gaaaacctcc tgtttgaact gagctgatga ctccacggtt gtagggtgtg aaaggggtca      1860
     ctaaagcaat gctttatcgg actgtgacca aaggtagggt gggcagtacg cgagcctatt      1920
     tacatctatg gcatcgcaaa ctttctactt ctctcctctc tctctctttc taactccatc      1980
     tcttccgcgt cgaattaatt cttccgttct tcctgttagt atctagctat ctatcttgtc      2040
     gcctgcacgc tcaattctgg actttattta atattaaatg tggccgtgtt aggatttgta      2100
     cgaagcaaga tctcca                                                      2116
//
ID   Gypsy-35_DEl-I repbase;    DNA;    INV; 7932 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DEl-I.
XX
NM   Gypsy-35_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7932
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 476-476 (2012).
XX
RN   [2]
RP   1-7932
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1746..2861
FT                 /product="Gypsy-35_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MSRKTIVEKTRTRLGLRNSTSLPNIREEEIIIMDSGN
FT                 ASGSRTTSPTDSATNNIGNASTILNTSSTTTLNTTLNPTDILAFVKQLPTF
FT                 EGTPGTLQKFIVSVEEIIMLIRGTDQTPYGQLLLRTLRNKIIGKADETLNI
FT                 LDTKLEWDSIRENLKRMYACKKTEPILIAEIQNLPASLSLGKLFFEITRLR
FT                 SELLSLPADPDHGVSAASKRALYDGICLNAFLVGLRDPLRTVIRARNPTTI
FT                 EAAYEWCQAEQNFIYQKQNKLQNNRFNSDRNRPYQRGSYQNNSVGGNNYSS
FT                 NNYGQDYRGNSYSSGNPFRQGPNQSQHRFNNNRQNNDNRMGGNNTDQNRSS
FT                 TSRRPAPNFNNIDDSSNFQQEASTDKSVT"
FT   CDS           6735..7931
FT                 /product="Gypsy-35_DEl-I_3p"
FT                 /note="envelope."
FT                 /translation="MDAYDEAKINKDLEALRSNSETNLIFQNETRIRFEEI
FT                 TNHINREQELIGNFVNSYQNKIFKQIDEEQKNIQLIQYIDRINFNIDLLYN
FT                 HLNNIAESLLFAKLKIVPKYLLNSMEMEKLKILLADQKVEVQLEHELYNVL
FT                 SLESTTINKTLIFNIKVPILSQQSYNLYRLIALPLNKTMFVNVPNVIIKND
FT                 VEIKIIDTPCIKVGSTHVCETPSTPNNTECLYNLLDDREATCSTIKRDHQP
FT                 QIFIPIKGLMVILNVENLNITSNCISSKIFSGSMLIKYDNCSISANGTKYV
FT                 EAATTIIDDIEVNLPHIQHLTTIPEVEPLNLEVLHLSNLENGLAVSNIEER
FT                 ATTHLSIIYLLVASSILITTVAWIFKRKEIIFSPTPADPIVTPAIPSLWPS
FT                 FQVKG"
FT   CDS           2813..6340
FT                 /product="Gypsy-35_DEl-I_2p"
FT                 /translation="RQLKFSTRSLDRQVGYINKKTHGLSLPYIVITLSYSP
FT                 KPLKFLIDTGSTYSFVDPSLIPQDDIQKLENDVRITTVLESYSLTLRAVLP
FT                 IPIEFKEHGEIQLLLFKFHPYFDGLLGMDFLTDRKVKINIEELKIETPFTT
FT                 INIITEVNRGTDELFIQPQSKTIIKLPVNLMEGDFLCNSLEVDSNLSVSGG
FT                 LYTASDGHSFFEITNNSGTGQILCLDQPLKVLPYNKECYDQINGVTLNPSY
FT                 QQIRGNLSEQILMDHLTDEEKQGLVKICKKFQDLFYDDATPLTFSNTVKHP
FT                 IPTTDNIPIHVKTYRYPYIHKEEVRKQISKMLEQNIIKNSHSPWGAPVWVV
FT                 PKKSDSPEQKKWRLVIDFRKLNEKTISDRYPIPNINDILDNIGRAKYFSTL
FT                 DLASGFHQIQMDPRDMAKTAFSVENGHYEFTRMPFGLKNAPATFQRVMDNV
FT                 LGELIGDICLVYLDDIIIFSASLQKHLMDINSVFQRLRQANLKIQITKSNF
FT                 LRKEIDFLGHVITQDGIKPNPDKIAAVKNFPCPKTAKQIKSFLGLLGYYRK
FT                 FIKDFARITKPISRQLKGGKSVIIDAEFIEAFEICKTLLTNNPILQHPNFQ
FT                 KPFSLTTDASNFAIGAVLSQGPDGSDRPICFASRTLNEAETRYSTIEKEML
FT                 AIIWAVKYFRPYLYGNKFKIITDHKPLVWLQNFKGQNPKLLRWKLTLSEYD
FT                 YDIVYKKGSQNVIADALSRIEPNILANDGDCTISPSIPVAQKALNTFNTQV
FT                 IFEIGQTPSFVTSNPSKNKTRTRITEPSYTLEGITDILKQILTPNKTLAVH
FT                 SPDEIFDIIQNAYTKYFADSGLYKIYRCLILLHEPIDPNEINCLIKTHHSN
FT                 NNHRGVEEMYQHLKREIYVPQLKSLISQAIRDCETCLTLKYDRCPQKPPFV
FT                 LPEIPNRPLEIIHTDIYTINNNYNLTIIDKFSKFAQAYQLTNRNSILVIKA
FT                 FKTFFCQFGIPKKIILDQGAEFSGAIFKDFLAQYEIELHITSFQQSSSNSV
FT                 VERLHSTLTEIYRIILSKRKELKLTIEHDEILSETIITYNNAIHSSTNLTP
FT                 FELFSGRTHIFEKTIKFDSEHDYLQKLNEFQTELYPTLKKHMADATKRRID
FT                 RLNENRTTPPDLPVGTSIFRKENRRNKITPRFSKHKVLLDSGVTLRTIRKQ
FT                 KLHKQKVRRAVIQTNDT"
XX
SQ   Sequence 7932 BP; 2919 A; 1715 C; 1247 G; 2050 T; 1 other;
     ggcgcagccg gtttttaaaa gaaccaagga tgaaattcag cgagatcatc atagtagtta        60
     ctatgtaata attcgggtaa gccaaggggc aaagtaaaat aaaatatacc agtggaaatg       120
     aaagtgcaaa catttttgtg tgcccacaaa gaaatgtgga taataaagaa aatatatata       180
     tttgaacaaa attttttctc aacgatctga gtcaacgagt tagtgacggt taacaaaaat       240
     ttataacaaa tacccatttg gtgtttatca attgttgacc agcacagtat acactgtaca       300
     ttaaatgtgg ttatctcaat ctatctaaat gtggccatct aaatcaaact atgtatctat       360
     acgaattgtg accatcaatc gctgatcggc acaaaatgca tcgcgcatta ttatagatat       420
     ataaaacgac atgttaaaag gaaaaatata tataaataaa attttataca cgacaaattt       480
     ttattatata atctatacca attgtgacca tcaatcgctg atcggcacaa aatgcatcgc       540
     gcattattat agatatataa aacgacatgt ttaaaagaag tgtaaataga gatttttata       600
     cacattttta ttatatatct atatcaattg tgaccatcaa tcgctgatcg gcacaaaatg       660
     catcgcgcat tattatagat atataaaacg atatgcttaa aagaaatata aataaagatt       720
     tttataatca catttttatt atatatctat atcaattgtg accatcaatc gctgatcggc       780
     acaaaatgca tcgcgcatta ttatagatat ataaaacgat atgcttaaaa gaaatataaa       840
     taaagatttt tatacacatt tttattatat atctatatca attgtgacca tcaatcgctg       900
     atcggcacaa aatgcatcgc gcattattat agatatataa aacgacatgc ttaaaagaaa       960
     tataaataaa gatttttata cacattttta ttatatatct gtatcaattg tgaccatcaa      1020
     ttgctgatcg gcacaaaatg catcgcgcat ttctacagat atgtacaacc taaaatactc      1080
     caagtaaaac gtacactgaa aatttgattt ccacacccac atcatcaaaa gataataaaa      1140
     aaaaaaaata aacagctaca atgctgcaga aaagaataca aactcgtcga tgaaatcgtt      1200
     gaaaaggaaa aaaagcccta aactacttac attgttggca tttcaactat aatttaagag      1260
     taaaatcaaa taacaatttg caaaagaagc acacagtaat cttagtaatc attgcctcac      1320
     caacggattg aataattact ttgccccatg gttaccacag gaaaaaagta cacacacaca      1380
     cactaattat gtcagtttta cagattctca gcgtaataca acgacacaaa tttccgtaac      1440
     tattagcata gactaagcca tacacccgta tatatattta cacgtaaaat tacctatata      1500
     caagcaaaaa atatatatat ttatttttta attacacata cgacatttac acaaacgttt      1560
     tcttattaag ttagctacac gagaaaatat aagtaatacg attttttttt ttccttttcc      1620
     acacaattta taattttaca cctctccttt taaagcacat aatatctacc aaaacatata      1680
     attccaaaat tcacatatat atctcctaaa tctttaatta cgcaaatacg tattttcccc      1740
     acctaatgtc aaggaaaaca atagtagaga aaactagaac tagactaggt ctcaggaata      1800
     gtactagcct acccaatatt agggaagaag aaattataat catggattcg ggaaacgcat      1860
     cgggctctag gaccactagc cccactgata gtgccactaa caatatagga aatgctagta      1920
     ccattctaaa cacttcgtca accacaaccc taaataccac tcttaaccca accgatatat      1980
     tagccttcgt caaacaattg cctactttcg aagggacccc aggtaccctc cagaaattta      2040
     ttgtaagcgt tgaggaaatt attatgctaa taaggggaac ggaccagacc ccgtacggac      2100
     aattactact aagaaccttg agaaacaaaa ttataggaaa agcggacgag accctgaata      2160
     tcttggacac caagctagaa tgggacagta tcagggaaaa tctgaagcgt atgtatgcct      2220
     gcaaaaagac agaaccaata ctcatcgccg aaattcagaa ccttcccgct agtttgtccc      2280
     tgggtaaatt atttttcgaa atcacaagac tccgtagcga acttttgtca ctccccgcag      2340
     acccagacca cggtgtaagt gcagcatcaa aaagagctct ttatgatgga atttgcctta      2400
     acgccttcct cgtcgggcta cgagacccac tcagaacggt catccgagcc cggaatccga      2460
     caacgatcga agcggcttac gagtggtgcc aagctgagca gaacttcatt tatcaaaaac      2520
     aaaacaaact acaaaacaat agattcaact cagaccgcaa tagaccctat cagaggggtt      2580
     cgtaccagaa caactccgtt ggtggaaata actactcttc caataattac gggcaagatt      2640
     atcgtggaaa ttcctattcc tcgggaaacc cgttccgcca aggccccaac caaagccagc      2700
     atcgtttcaa taacaacagg cagaataacg acaatagaat gggaggaaat aatactgatc      2760
     aaaatcgtag cagtacctca cgcaggcctg ctcccaattt taacaacatt gacgacagct      2820
     caaattttca acaagaagcc tcgaccgaca agtcggttac ataaacaaaa aaacgcacgg      2880
     tctatctctt ccctatatag ttatcactct atcctattcc ccaaaaccac taaaattcct      2940
     catcgacacc ggttccactt attcttttgt agacccaagc cttatcccgc aagatgacat      3000
     acaaaaatta gaaaatgatg tccgaatcac aacagtactg gaaagttatt cgctgacctt      3060
     aagggctgta ctacccatac caatagaatt taaagaacat ggagaaattc agttactact      3120
     tttcaaattc cacccatact ttgatggtct tcttggaatg gatttcctaa cagaccggaa      3180
     agtaaagatt aatattgagg aacttaaaat cgaaacccca ttcaccacaa tcaacattat      3240
     tacagaagtt aatagaggaa cagacgaact ttttatccag ccccaaagta aaaccattat      3300
     caaactacca gtaaatctaa tggaaggtga ctttctctgt aattcattag aggtagacag      3360
     caacctttct gtttccgggg gactttacac agcctcagac ggccatagct tcttcgaaat      3420
     aactaacaat tccgggacwg gacagatcct atgcctcgac caaccattga aggtactacc      3480
     atataacaaa gaatgttacg accaaataaa cggggtaaca ctcaacccaa gctaccaaca      3540
     aataaggggc aatcttagcg aacaaatttt aatggaccat ctaacggacg aggaaaaaca      3600
     agggctggtt aaaatttgca aaaaatttca agatcttttc tatgatgacg cgacacctct      3660
     cacattttcc aacacggtca agcaccctat cccgaccacc gacaacatac caatacatgt      3720
     caaaacgtac agatatccat atatacataa ggaggaggtc cgaaaacaaa tatccaaaat      3780
     gcttgaacaa aatattataa aaaacagcca ctccccttgg ggtgcccccg tgtgggtagt      3840
     tccaaaaaaa tctgactccc ccgaacaaaa gaagtggaga ttggtaatag atttcaggaa      3900
     actgaacgaa aaaaccatct ccgacaggta tccgatcccc aatattaacg acattcttga      3960
     caacatcggt agggccaaat atttttccac tttagatttg gctagcgggt ttcatcaaat      4020
     ccagatggac cccagggaca tggccaaaac agccttctcg gtggaaaacg gacattacga      4080
     attcacgaga atgcccttcg gactgaaaaa cgccccagct accttccaaa gagtaatgga      4140
     taatgtacta ggcgaattaa taggagacat ctgcttagtc tatcttgacg acatcattat      4200
     attctctgcc tccctccaaa aacacttaat ggacataaac tctgtatttc agagattacg      4260
     ccaagccaat ctaaaaattc aaatcaccaa gtcaaatttc ttgagaaaag aaatcgattt      4320
     cttgggacac gtaataacac aggatggtat caaaccaaac ccagacaaaa tagcagcggt      4380
     gaaaaatttc ccttgcccaa aaactgctaa acaaataaaa tcctttttag gattattggg      4440
     ttattatagg aagtttataa aggactttgc tagaataacg aaacccattt ctcgccagct      4500
     taagggtggc aaatccgtca ttatagatgc agaatttata gaggcgtttg aaatttgcaa      4560
     aactcttcta acaaacaacc cgatcttgca acacccaaac ttccaaaaac cattttctct      4620
     cactacggac gcaagtaact tcgccattgg tgccgttctc tcccagggcc ctgacgggtc      4680
     cgacagacca atttgtttcg cgagtagaac cttgaatgaa gcggaaaccc ggtattcaac      4740
     tatagagaaa gaaatgttag caataatctg ggcagttaag tactttcgcc catatttgta      4800
     tggcaacaaa ttcaaaatca ttacagatca caagccctta gtatggttac aaaactttaa      4860
     gggccaaaac ccgaagctcc ttcgttggaa actaaccctc tctgagtacg attacgatat      4920
     tgtctacaaa aaaggctcac aaaacgtcat tgccgatgct ttgagtagaa ttgagccaaa      4980
     catacttgcc aacgacggcg actgcaccat ttcacctagt atcccagtag cccaaaaggc      5040
     acttaacaca ttcaacacac aagttatatt cgaaatcggc cagaccccct catttgtaac      5100
     aagcaatcca tctaaaaata aaacacggac acgtataacg gaaccatctt ataccttaga      5160
     aggaatcaca gatattttaa aacaaatttt aacaccaaac aagaccttgg cagttcattc      5220
     acccgacgaa attttcgata taattcaaaa tgcttacacc aaatatttcg cagactccgg      5280
     tttgtataag atttacagat gtctcattct cttacacgag cctatcgacc cgaacgaaat      5340
     taactgccta ataaaaactc atcattctaa caacaatcat agaggtgtgg aagagatgta      5400
     ccagcatctg aaaagggaaa tttacgtacc ccaactaaaa tctctaatct cacaagcaat      5460
     ccgggattgc gaaacctgcc ttacacttaa gtacgatagg tgtccacaaa aaccaccatt      5520
     tgttttacca gaaataccga acaggcccct agaaataata cacacggaca tatatactat      5580
     caataataat tataacttaa caattattga taaattctcc aaattcgctc aagcctacca      5640
     gttaaccaac agaaactcaa ttcttgttat caaagccttt aaaaccttct tttgccagtt      5700
     tggaataccc aaaaaaataa tacttgatca gggggccgag ttctctggtg ctattttcaa      5760
     agacttcttg gcacaatacg aaatagaact tcatattact tcctttcaac agtccagtag      5820
     taactctgta gtagaacgtt tacattccac tctaacagag atttatagaa tcattttgag      5880
     taagagaaag gaattaaaat taaccattga acacgatgag atactttccg aaaccataat      5940
     aacctacaac aatgcgatcc actctagtac aaatttaact ccattcgaac tttttagtgg      6000
     ccgcactcac atctttgaaa aaacaatcaa attcgacagt gaacacgatt acctacaaaa      6060
     acttaacgaa ttccaaactg aactataccc gaccttaaag aaacacatgg cggacgcaac      6120
     gaaaagacga atagatcgct taaacgagaa caggacaacc ccccctgact taccggttgg      6180
     aacttctatt tttcgcaagg aaaataggag aaataaaatc acacctcgtt ttagtaagca      6240
     taaggtttta ctggacagcg gagtaacatt acgaacaata aggaaacaaa aactacacaa      6300
     acaaaaagtt aggagagctg taatacagac aaatgacaca taagcatact tgcgaaactt      6360
     ggttaatcat actcccaatg taattttaca gattgacctt gggaacaact caacggctcg      6420
     ttagcgaaat attggataaa gaccaacccc ttttaaaaat caacctgggt acagcgagag      6480
     tggtaaaatc atttaaaata tttaaacatg taattcacct aaaaaattat gaggaatcgg      6540
     cagctaaaat acaggaggtg ataggaaacc tacccgacga acagggtttt gaagatttga      6600
     aactcacttt acatcaaaaa ttatctcaag ttcaacaaag actaaattcc ttgcttccca      6660
     acaatggggg taataggccc aggagaggat taattaatgg attaggccac atagttaaaa      6720
     tagtttcagg aaatatggac gcctatgacg aggcaaaaat aaacaaagac ttagaggcct      6780
     tacgcagtaa ttccgaaacg aaccttattt tccaaaacga aacacgtata agatttgagg      6840
     aaataactaa ccacattaac agggagcaag agcttatagg caattttgta aattcatacc      6900
     agaataaaat ctttaaacaa atagatgagg aacagaaaaa cattcaactt attcaatata      6960
     tagacaggat taatttcaac atagatttac tttacaatca cttaaataat atagcagaaa      7020
     gcctactatt tgccaaatta aaaatagtcc cgaaatactt attaaattct atggaaatgg      7080
     aaaaattaaa aattttacta gcagatcaga aagtagaagt tcagttggaa cacgaattat      7140
     ataatgtgct ttcattagaa tccactacta ttaataaaac actcatattt aacattaaag      7200
     ttccaattct gtcccaacaa tcttacaatt tataccgact catagcacta ccacttaaca      7260
     aaacaatgtt tgtaaacgta ccgaatgtta ttattaagaa tgatgtagaa attaagatta      7320
     ttgatacacc ttgtataaaa gtgggtagta cacatgtttg cgaaactcct tcgactccga      7380
     ataacacaga atgcctctac aaccttctgg acgacaggga agcgacctgc agcacaataa      7440
     aaagggacca tcaaccacag atcttcattc ccataaaggg attgatggtg atcctcaatg      7500
     tggagaactt gaacatcacc tccaactgca tctccagtaa gatctttagc ggctctatgc      7560
     tcataaaata cgataactgt tctatctccg ccaacgggac caagtacgtc gaggccgcca      7620
     ctacaataat tgacgacatc gaagtaaacc tccctcacat ccaacactta acaacaattc      7680
     ccgaggtcga acccttaaac cttgaagtac tacatctgag caacctggaa aatggattgg      7740
     cagtttccaa catagaagaa cgtgccacta ctcacctgtc aatcatatac ttactcgtgg      7800
     catcgtcaat cctgattaca actgtggctt ggatctttaa aaggaaggag ataatttttt      7860
     cccctacccc tgcggacccc attgtcactc ccgccatacc ttcattatgg ccatcgttcc      7920
     aagttaaggg gg                                                          7932
//
ID   Gypsy-35_DEl-LTR repbase;    DNA;    INV; 401 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DEl-I;
KW   Gypsy-35_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-401
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3099-3099 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 401 BP; 111 A; 131 C; 75 G; 84 T; 0 other;
     agttaccgct gatgtcttcc cgatgacatc acctccaccc aaaccccctc gggcattgtc        60
     ccactaacgg cgatgccgtt caacccggac ataggatcgc caacgcagcg gtttctggat       120
     gccggatcgt gtaaacaact gggtctcggg catccggccg aaaccgctga cctaggagat       180
     ttcgcaaact caacatatgt accccacccg caaacgaagc tctcattgta cttgaaacca       240
     gaaataaaaa tcagtcttag agcgacactt ggaagtataa gtctttcatt cccgaaacct       300
     cctaactcga cagcctacac cagccagatc cgacctctaa ttacaccagc cagatccgac       360
     ctctaatcta caccagccag atccggcctt cgactataat t                           401
//
ID   Gypsy-35_DWil-I repbase;    DNA;    INV; 5330 BP.
XX
AC   scaffold_181143;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DWil_;
KW   Gypsy-35_DWil-LTR; Gypsy-35_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5330
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181143; Positions  337177  342506.
XX
CC   Positions [4294-4770] - Integrase core
CC   'CGGC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1864..2748,2752..5142)
FT                 /product="Gypsy-35_DWil-I_1p"
FT                 /translation="MRTTRSSVTQMPGGKRDAEQNEGGVALRAAEERVKTS
FT                 KNCMLEIDIVNRLRPIYNKLEYKQSNLPISAYSHQQFSEKRNPLGLVEETN
FT                 RKKAMSNRVKRVREQYRQRRTKRQEVCSALEAVSRQKENRAFATVKMQMFH
FT                 VEGLLDTGASVSFLGDGCEDLVNKLELKRKTYYSKVQTAGGVNHAIKGKVD
FT                 VHMTYRGRTQEMTLYLCPSLRQRLYLGIDFWRKFELAPDLLGVEELSIEDE
FT                 EFNSKKEPVEPHVLNETQQEVLASITTKAEVVVPRGRRNAQIGSDRTKRKP
FT                 VEQGNIGAETWEKLRLCLDVRKLNKVTIKDAYPLQNIESILSRVEDTIFIS
FT                 SVDLRHAFWQVELEVESRKYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLM
FT                 DKVIPQGLRSHVFVYLDDLLIISRTFEENIEHLKAVAECLKKANLTIGLKK
FT                 SKFCFRFLKYLGFVIGDGKLKTDPDKVKAITEIPLPNTVRQLRSFLGTAGW
FT                 YRRFVQGFAEKAAPLTDCLKSKGKFKLTKEATESFNLLKQALTNAPVLVHP
FT                 DFSRRFFIQCDASHVGLGAALFQQDDEGNERPISFFSQKLRGAQLNYTVTE
FT                 KECLAAVKAIERFRPYVELMPFTVITDHSSLQWLMTLKDLNGRLARWSLAL
FT                 QSYDFVIEHKKGKDNVVADMLSRTAVIEELNFFDFETTEFESEEYRQRYKC
FT                 VLSNPDKLPDLHAEDGLVLKRMRITDNEIADVAWKLWIPEALTHTLIQQAH
FT                 DSEEAMHGGVARTLGRLKQFYYWPRMAVQVKNYIAACDTCKEAKHTTQTTR
FT                 PTMGAEVCTSRPIQKLYLDFLGKYPRSRKGNAYILIVLDHFTKFVWLKTMP
FT                 KATSAATIKFLREELFNTFGVPEIVHTDNGKQFTSKEFEEMVSRFGITHTR
FT                 TAAYSPQANASERVNQSILAAIRTHVGEDHTHWDVKIPEIQAALRSAVHST
FT                 IGTSPYYAMFGQHMFRNGGDYRLARKLDADAAVEIKQLLREDQLQILQEKI
FT                 VARAHQAFEKSKKRYNLKAREIQYRPGQEVWKRNFVLSDFKRNINAKFCKR
FT                 YSRCRIMRPVGKNMYELENLHGIRLGVFHAKDLKQ"
XX
SQ   Sequence 5330 BP; 1740 A; 1077 C; 1378 G; 1135 T; 0 other;
     aatggcgccc aattaaaaaa ataaaaattt aaaacaaaga aacaaacgga agagtataac        60
     aaattaaatg tcccaagtac tgctagcatt aagaaggcat aacttagtct ggttctgaaa       120
     aagaaagaag agaaacagat cctttttaat attgaactag cacgatataa gaccagatac       180
     ttatctaaga ccagaatcag catagtagca attcagccgt gaaccgtgga gatttcaaag       240
     aagagatcac atagatgtcc gacctgaaat gaattattga aatggtaaag gtcaatagta       300
     cggaatgatg ggtacagagg aaattaaaat ccaagaaata ggatcaagtt cagggaatta       360
     aagttctgga atcatctcac ctccattaac aaagaattaa caaaaaaaaa aaaaaaaaaa       420
     agagacaatc aaagcataga acaaatagaa aggaatgtca gtagaagaaa gagataggat       480
     atcaaaaatc agaaaattta gaagaagctc agaatactta aagaatagag gaacagaggt       540
     aatgggtccg ccaataactc gatcccaatc agaaaaccgt gcagactcac gaatttcaaa       600
     cgtttcaccg ccgacagact tcaacatgtc aacagaccga aagatcaacg aagaggatgg       660
     tgccgtaggg ggcagcgggg caatcccaaa acataatatg ggaacaagaa tgattcacca       720
     ggcaccagaa gatggatcat atatgggacc ggaaaaccca cggccagccc tacccacgga       780
     aatcacatcg gctataaatc tagctgtagc acaggcgcaa gagacgtacc gagcgacaat       840
     gtcagcagag aactctcgat tgcaagcaca aattcgccaa gagatgctag gttttatgaa       900
     gcagattcgg gaggcggttc aagaagcggc tcagcaatcc accacgatga gatccaccaa       960
     tgtccaagga gagagggctc caatccatcc tacagaagcc atagaccatc gagtattgga      1020
     gcgacagcaa cgtgagaatc tggaaagtcg tccaccacaa cgatcttcct ggcattggcc      1080
     tgaagatacg aggcaacaat ctggagtgcc aataacaacg gaacagcgtc ccgaaatcgt      1140
     acatccgaga agatggggtc tggtttttga cactggcatt cctagtaaat gaatttatat      1200
     ttcgtctgga gcacttacag acggcgtacc aagtaagttg gggcgaagta ctgcgagatt      1260
     tccactgctt ggtagaaggg caggccaagg actggtactg gatgcacgta cgctcagcag      1320
     gaccagcaga ttggccgaat atgaagcacg cactgcagca gagattccag acgcaacgat      1380
     caaactttga gcgggaacgt gagttgcgag agcggcggca aaggacagga gaaagcgtgg      1440
     atgaatacct ccaagcgatg tttagcctcc gatcacgctt agaaagcaac ttctcggacc      1500
     atgacctgat cagagtaatt aaggttaata tcaaagacag tatatcgaaa attatttatc      1560
     caatatggat aacaaacctg gagaagttgc gagaggaatg ccatgaggcg gagagactct      1620
     tggcaactag atggtctcgt gcatcgggag gagcggagcc gcatagagtg cagagggatc      1680
     ggcatcaact aacaaagcgg ttttggcaga gcccgaaggt catgaagtgg agtttgttga      1740
     agcggtgtat aagccacgcg aaggcagcaa ggatcggcca gaactcgcct gttggaactg      1800
     tgcggagaag ggccatacat tttgggagtg cgagagtgta gttcgcaaga cattctgcta      1860
     caaatgcgga ctaccaggag tagtgttacc caaatgccag gcgggaaacg cgatgcggag      1920
     caaaacgaag gaggagttgc gctcagggcc gcggaagaac gagtgaaaac ctccaaaaat      1980
     tgcatgttag aaatagatat tgttaataga ttaaggccaa tatataataa attagaatat      2040
     aaacaatcta acctacccat atcagcatat tctcaccagc aatttagtga aaaacggaac      2100
     ccattgggat tggtagaaga aaccaatagg aaaaaggcca tgtctaaccg agtcaagcgt      2160
     gtgagagagc aatacagaca acgaagaaca aaacgccaag aggtttgttc ggccttagaa      2220
     gcagtgtcaa ggcaaaagga gaatcgggca ttcgctacgg taaagatgca aatgtttcac      2280
     gtagaaggtc tgctagacac gggagcttca gtgagtttcc tgggcgacgg atgtgaagat      2340
     ctggtgaata aactggaatt aaaaagaaaa acatattact cgaaagttca aacggcagga      2400
     ggagtgaatc atgctataaa gggaaaggtg gatgtgcata tgacgtatcg aggtagaaca      2460
     caagaaatga cgctgtacct gtgcccgtca ctgcgtcaaa ggttatactt aggcatagat      2520
     ttctggcgca aattcgagct cgcacctgat ctcttgggag tagaggagtt gtccatcgag      2580
     gatgaggagt ttaattccaa aaaggagccg gtggaaccac atgtcctcaa cgagacgcaa      2640
     caagaggtcc tggccagtat caccaccaaa gcagaagttg ttgttccaag aggtcgacga      2700
     aatgctcaaa ttgggagtga tcgaactaag cgaaagcccg tggaacaata gggtaacatt      2760
     ggtgcagaaa cctgggaaaa acttagactt tgcttagatg tacggaaatt gaataaagta      2820
     acaatcaaag atgcttaccc gttgcaaaat attgagtcca ttctgagccg ggtcgaggat      2880
     acgatcttca ttagtagtgt tgacctaagg cacgcgttct ggcaggtaga gttggaggtg      2940
     gaaagtcgga aatacacggc atttaccatc ccggggcgcc cgctgtatca gttccgcaga      3000
     atgcctttcg ggctttgcaa tgcggcgcag cgcttatgcc gactcatgga taaggtcatt      3060
     ccccaaggct tgagaagcca cgtattcgta tatctggatg atcttctgat tatatcccgc      3120
     acatttgaag agaacataga gcatctgaag gcagtagctg aatgtttgaa gaaggccaat      3180
     ctaactatcg gattaaaaaa atcaaaattt tgcttcagat ttcttaaata cctgggattt      3240
     gtgatcggag atggaaaatt aaagacggat cccgataaag tgaaagcgat cacggaaatt      3300
     ccattgccaa acacggtgag acagctccgt agctttctag ggacggccgg ctggtatcgt      3360
     cgattcgtcc aaggctttgc agaaaaagca gcaccgttga ccgattgcct gaaatcgaaa      3420
     ggaaaattca agttaacaaa ggaggctacc gagtcattta atttacttaa acaagcccta      3480
     accaacgctc cagtattagt acatcctgat tttagccgca gattcttcat tcagtgtgat      3540
     gcgagccatg taggattggg agctgccctg ttccagcagg atgacgaagg aaacgagagg      3600
     cctatctcat tcttttcaca gaagctacga ggagcccagt taaattatac ggtaacggag      3660
     aaggaatgtt tagcagcagt caaggcgata gagagattcc gtccatatgt agagcttatg      3720
     ccgtttaccg tcatcacaga tcattcgagt ctccagtggt tgatgacgct gaaagattta      3780
     aatgggagat tagctcgctg gtcattggca ttgcagtcat acgatttcgt gatagagcat      3840
     aagaaaggaa aggacaacgt ggtggcagat atgttgtcgc ggaccgcggt aatcgaggaa      3900
     ttgaattttt ttgattttga gactaccgaa tttgaaagcg aggagtaccg gcaacgatac      3960
     aagtgcgtgc tgtccaatcc agataaatta ccggacctac atgcagaaga cggattggtg      4020
     ctgaagagga tgcggattac cgataatgaa atcgcggatg tggcgtggaa attgtggata      4080
     ccagaggcat tgacccacac actcatacag caagcgcatg atagcgaaga ggcgatgcac      4140
     ggtggagtcg cacgaacgct cggcaggctt aaacagtttt actattggcc acgaatggcc      4200
     gtgcaagtca aaaattacat tgctgcatgt gatacgtgta aggaggcgaa acataccacg      4260
     cagacgaccc gaccaactat gggagcagag gtgtgcacgt cgcggccgat acagaagctg      4320
     tatctggact tcctgggcaa atatccacga tctcggaaag gtaatgccta tattctaata      4380
     gtgttggatc actttactaa gtttgtgtgg ctcaaaacca tgccaaaagc gacgtccgca      4440
     gcgacaataa agttcttgag ggaggaactc tttaacacgt ttggagtacc ggagatagta      4500
     cacaccgaca acgggaaaca gtttacctcc aaggagttcg aggaaatggt gtcccgtttc      4560
     gggatcacac atacgcggac agcagcctat tcaccccagg caaacgcatc ggagcgggtg      4620
     aatcagtcta ttttggcggc gataagaaca catgttggcg aggatcacac gcattgggat      4680
     gtaaagatac cagagataca agcggcactg agaagcgcgg tgcactcaac gattggaaca      4740
     tctccgtatt atgcgatgtt tggccaacac atgtttcgca acgggggcga ctaccgattg      4800
     gctcggaagc tggatgctga tgcggcagtg gaaattaagc aactactcag agaagaccaa      4860
     ttgcaaatcc tccaggaaaa gattgtggcc agggcccatc aagcctttga aaagtcgaaa      4920
     aaaaggtata atttaaaagc tagggagata caataccgac caggacagga ggtgtggaag      4980
     cgcaacttcg ttctcagcga cttcaagcga aatataaatg caaaattctg caaaaggtat      5040
     tctcgatgca ggataatgag accagtgggc aaaaacatgt atgaattaga gaacttacat      5100
     ggcatccgat tgggagtttt ccacgccaag gacttgaagc agtagatgca gatgcctgta      5160
     gttttgcccg gctaactaat gattgtggcg gaaaaatatg atcggctgac tgagagaagg      5220
     tatctcaggg tgtgggcgag ggcctgcgtt gggcgagaat gatcctcaga acctagacaa      5280
     ggcccacttt tcactcctgt ttcctggtaa gaccgaaaac cgaagtgtgc                 5330
//
ID   Gypsy-35_DWil-LTR repbase;    DNA;    INV; 910 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_DWil_;
KW   Gypsy-35_DWil-LTR; Gypsy-35_DWil-I.
XX
NM   Gypsy-35_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-910
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-910
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
SQ   Sequence 910 BP; 288 A; 147 C; 228 G; 247 T; 0 other;
     tgttatgggc caaataattg ataaacaaca atacagctgt tatcgatggt gctggctcgt        60
     tagctagaaa attagctggg aatttggcgg gaaaaaacca agggaaccga gctagttctg       120
     ggagcggttc cggttccggg aacaaaattt gaatttttag gaatctaaga gagtggagga       180
     gttgagtctt ttttggaaaa aaagaggaag aggacgagaa acagaaaaaa ggagaaagaa       240
     gttctagaag gcacgtggag ttgttaagtt ggagaagaaa aaaaactaaa aagtgcgtgt       300
     gccgagaagg agcatctcac ccatccttga agaccaagaa ttgcatgcga gacgcaggac       360
     ggacacacac aggagccttc ggacagccaa ttcgacggga tccaatcggc cacccagatc       420
     cgggtgctcc aggttttttt tccatttaac ctcaacatta ggctgttaga ataagtaatt       480
     gtattttgtt tatttatatt atttatttaa tttatatttg tattcgtccc agtggtaccc       540
     tggttaggct cagttattat tgtaaaaaaa aaaagtgaaa ttgtttaata taatatatgt       600
     gtgataaaaa aaggagaaat gtctgagtag agtcttgtct atgtgggggt gagatgacga       660
     cgggttagtc cacagaacat gggggctgcc agggagtacg gggcccaagg tagggtgggt       720
     agatcctaat taatatacca gctaattgat aattccataa tccatcttcc cgtccgagtg       780
     taacgttttt ttgtataatt tttttgttac ccgattaatc catccatcga ggtcgaatcc       840
     attcctgagc catgcgagtt agccggtgat cgatgatgga ttgcagaaga aaaataatcg       900
     gatcataaca                                                              910
//
ID   Gypsy-35_HeAr-I repbase;    DNA;    INV; 4905 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4905
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5582-5582 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           854..1702
FT                 /product="Gypsy-35_HeAr-I_1p"
FT                 /translation="MTEELQARVKMLEAENQALRTKHEHASTASIPEIAAS
FT                 TCRVAVKLPPFWSDRVAIWFEQAEAQFLLAGITTDITKYSYILSQIDTKIV
FT                 GEIEHIFINPPAEGKYERLKEALMKRFSISEEQRLRQLLSDEELGDRKPSQ
FT                 FLRHLRSIAGKTLSDDNILRQLWLRRLPQHAQSILATQADLTLDKVADIAD
FT                 KIMETEPTRVNVFATTGAPTLNSLLERLEELSSQVAALRTDRSRAPSRSRQ
FT                 SSRSNTPDRGARLCWYHRKFGYRATKCTSPCSWQSENPRSSQ"
FT   CDS           1588..4869
FT                 /product="Gypsy-35_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QYSGPRRKTLLVPSKIRLQSYEMHLTMQLAVGKPKEQ
FT                 SVAAATDCENSQPLSRRLFITDQVTKRQFLIDTGSDLCCYPHRWLTSRRKP
FT                 TDYDLCAANGSSIQTFGTITLTLNFRLRRQFTWTFIVADVNNAIIGSDFLA
FT                 YYHLLPDCRTKRLIDGVTNLSALASTAMSEQPSVKAVAPSNSGFGHLLNEF
FT                 PEITHPPGCPRTIKHDTVHFIKTTDGPPISCRPRRLAPQKLKSAKKEFEEM
FT                 VLSGTARPSKSAWSSPLHMTLKKDSTWRPCGDYRALNARTVPDRYPVRHIN
FT                 DFTHNLIGSKIFSTIDLVKAYHQIPVSEEDIPKTAIITPFGLFEFPFMTFG
FT                 LRNAGQTFQRFIDEVTRGLDFCFPYVDDILVHSTDADHHREHLRILFGRLR
FT                 DYGVVINPSKCVFGAREVTFLGFHISPEGTKPPQDRVQTIIDFPPPKTVQG
FT                 VRRFLGMLNYYRRFLPKAALFQAPLIKAVIATKGKGAKPFTWSPELLQQLD
FT                 DCKKSLASATLLHHPVSNAPLGLFTDASSVHIGSCLQQEVXGKWVPIAFFS
FT                 KKLTQQQAQWPAYYRELLAVYESVQHFRHILEVQHVTIFTDHKPLLYAFLQ
FT                 RREKLPPAQLNQLSFISQFTTDIKYIKGEDNIVADAMSRVDAIALDQDWET
FT                 LAKSQDTDQELANIIQQGSSLQLTKVNIPGTNFIITCDKSTGKLRPYLTPS
FT                 FRKATFDKLHSLSHPGARASTRLVTERYVWPSINKDCKQWARQCLECQRCK
FT                 VSRHNSSPLGNFALPQARFKHVHIDIIGPLPICNDYRYCLTAIDRVTKWPE
FT                 VWPMRSITAEEVAETFTREWISRFGVPSVVTTDQGTQFESDLFRRLMAQYA
FT                 TTRVRTTAYHPCANGMIERVHRQLKAAIMCHQDSWVRSLPLVLLGMRSAFK
FT                 EDLNATAAEMLYGEPLRLPGELIVETGEPDQFGDPADFVVQLRRKMSAIRP
FT                 IPASRHSEPSKFIFKDLSLSTHVFLRDDSVRRPLQPPYSGPYRVVSRASDG
FT                 KTITLEVNHKTVTVSIDRVKPAHMEHATHTSDEHNHRFTEPTTHTTVNLPR
FT                 RPNEHEKSRDTSLNAHKLPYTTRSGRRVKFKELPDYE"
XX
SQ   Sequence 4905 BP; 1321 A; 1266 C; 994 G; 1320 T; 4 other;
     gtggtgaccc cgacgtgatt gcgacatgat tgcgacgtga agcttcatac gactttgctg        60
     ccaatacaac gagctgcccc gcggacttcg agacttcagt catactctcc acagtcatcg       120
     cgggaataga gccctgcatt gcctacagcg tgtcctgagt gcttccacca taaactcact       180
     acatacccaa gtacctagtg catgtgcatt acaaaaacaa acaaaaataa aacttcaaaa       240
     aggatatcca gctgacatca actgcgcaag taccttttga ctacaaactg tgtttcaaag       300
     tttttttatt tttcttatat tctgatttgt ttatataaca acaatacttt tatattaata       360
     gataccataa cataattggt ttgcacttaa acaactttgc tatgtgaaat ggtcctaaat       420
     attaatttta ttacattcac accgttgtac taagtttaaa tcctaaatta tattctaata       480
     actgtgctta aacactaatt ttcctaagat ttaaactttt atttgcattt ctgcttgtgt       540
     gtagagaatt tctatattac cttttacatt gtttattttt tatttttatt cttttagcat       600
     gctaaggtct catttgaatt ttgttttggt gtttcttaat ttaattttct tgtgtttatg       660
     ggtttgattt acttgtgttt gttttatgtt tactttctat ctctggtcta acatttacct       720
     gcatgtttgc actgtcagct gcaccactca cccacggtta gaataactac tccgggatta       780
     gttttggtgt tcttggattt ttatttgctt cattaattaa tttcttaatt atttgcttat       840
     actattcctc accatgactg aggaactaca agcacgtgta aaaatgcttg aagctgaaaa       900
     ccaggccctg cgcactaagc atgaacatgc tagtactgca tctattccag agatagccgc       960
     ctccacatgt agggttgcag tcaagcttcc accgttttgg tccgataggg tggctatatg      1020
     gttcgaacaa gctgaagccc agttcctatt ggcagggata acaacagata tcaccaaata      1080
     tagttacatc cttagtcaaa ttgatacaaa gatagttgga gaaatcgaac acatatttat      1140
     caacccgcca gcagaaggca agtatgaaag actcaaagaa gctttaatga aaaggttttc      1200
     aatatctgaa gagcaacggt tgagacagct gttgagtgat gaggaacttg gtgacagaaa      1260
     accctcccag ttcctccgtc acctcagatc cattgctggg aaaactctat cggatgacaa      1320
     catcttacgc caactctggc tccgccgttt gccccaacat gcacagagca tccttgccac      1380
     tcaagcagat ttaacactgg ataaggtagc agacatagcg gacaaaatta tggaaaccga      1440
     gccaacacgg gtaaatgttt ttgctacaac aggagctcct actctcaaca gtttgctcga      1500
     acgattagag gagttgagca gtcaagtcgc cgctctgagg acagatcggt cccgagctcc      1560
     aagccgtagc agacagtcct cacgtagcaa tactccggac cgaggcgcaa gactttgctg      1620
     gtaccatcga aaattcggtt acagagctac gaaatgcacc tcaccatgca gctggcagtc      1680
     ggaaaaccca aggagcagtc agtagcggcg gcgactgatt gtgaaaacag ccaacctctt      1740
     agccgtcgcc tctttataac tgaccaagtt acaaagcggc agtttctaat tgataccggg      1800
     tcggacctct gctgctaccc ccatcgttgg ctcaccagtc ggaggaaacc taccgactac      1860
     gacctttgcg ccgccaacgg tagcagcata cagactttcg gcacaataac gctaacacta      1920
     aactttcgtc ttcgtcgtca gttcacctgg acattcatcg ttgctgacgt taataacgcg      1980
     attattggtt cagacttttt agcgtattat cacctccttc ccgattgccg cactaagcgc      2040
     ttgatagatg gtgtcacaaa cctctcagcc ctcgcctcca ccgcgatgtc agaacaacct      2100
     agcgtcaaag ctgttgctcc ttcaaactct ggttttggtc atttacttaa tgagtttcca      2160
     gaaataactc accctcctgg ttgccctaga actattaagc atgatactgt gcatttcatt      2220
     aaaacaacag acgggcctcc tatttcttgc cgtcctcgcc gtttagcacc tcaaaaactg      2280
     aagtctgcta agaaggaatt tgaagaaatg gttctatccg gtacggcccg accatccaaa      2340
     agtgcgtggt catctcccct tcatatgacc ctaaagaaag acagcacctg gcgtccttgc      2400
     ggagactacc gtgccctgaa cgcccgtact gtacccgacc ggtatcctgt ccggcacatt      2460
     aatgacttca cccacaatct cataggctcc aaaattttca gcacaattga tcttgtcaag      2520
     gcataccacc aaattccggt ttcagaagaa gacatcccaa agacagccat tattaccccc      2580
     tttggcctct tcgagttccc cttcatgacc ttcggccttc gcaatgctgg ccagaccttc      2640
     cagcggttta ttgacgaggt cacacggggc ctcgatttct gttttccgta cgtagatgac      2700
     atcctcgtcc actccacaga cgccgaccat catcgcgagc atttacgcat cctcttcggc      2760
     cggttacggg actatggtgt ggtgataaat ccttccaaat gtgtttttgg tgcacgtgag      2820
     gtgacatttc taggatttca cattagtccc gagggcacca aaccccccca agatcgtgtg      2880
     caaaccatca tcgactttcc gccccctaaa accgtccagg gtgtgcggcg ttttctcgga      2940
     atgcttaatt attatcggcg atttcttcca aaagctgcat tgtttcaggc gcccctcata      3000
     aaagcggtta ttgctactaa aggcaaaggt gcaaaaccat ttacatggtc acccgaactg      3060
     cttcagcaac tagacgactg taaaaagagt ctagcctccg ctactctatt gcatcatccc      3120
     gtaagcaatg ctccccttgg wttgtttaca gatgcctcta gtgtccatat cggatcctgc      3180
     ctccaacaag aggttwgtgg caagtgggta cctattgcct ttttcagcaa aaagctgacc      3240
     caacaacaag cacagtggcc ggcttattat cgggaactat tggcggtgta cgaaagcgtg      3300
     cagcacttcc gccacatcct agaggtccaa catgtaacca tttttacaga ccacaagccg      3360
     cttctgtatg ctttcctcca gcgtcgagaa aaactgccac cagcacaatt aaaccaattg      3420
     tcgtttataa gccaattcac tacagacatt aaatacataa agggagagga caatattgtt      3480
     gcagacgcma tgtctcgcgt tgacgccatt gctctcgatc aggactggga aacgcttgca      3540
     aaatcacagg atacagacca ggaattagca aacataattc aacaaggctc tagcctgcag      3600
     ttaaccaagg tcaacattcc aggaaccaac tttatcatca catgtgataa gtctaccggc      3660
     aagcttcgtc cttatttgac cccttccttc cgaaaagcta cgtttgataa gctacatagc      3720
     ctaagccatc ctggtgcgcg agcttccacc cgcctcgtaa ctgaacgcta cgtttggcct      3780
     tccatcaaca aggactgcaa gcaatgggct cgtcaatgcc tagagtgtca gcgttgtaaa      3840
     gtatcgcgtc ataattcgtc ccctcttggc aatttcgcat tacctcaggc tcgtttcaaa      3900
     cacgtccaca tagacattat aggtccctta ccgatctgca acgactatcg gtactgtctg      3960
     actgctattg acagagttac aaaatggccc gaagtatggc caatgcgttc gataactgca      4020
     gaagaggtag cagaaacatt tacccgggaa tggatttcgc gtttcggcgt gccttcagtt      4080
     gttaccacgg atcaagggac tcagttcgag tctgacttat ttcgccgact gatggcacaa      4140
     tatgccacca ccagagtcag gacgacagct tatcatcctt gtgccaatgg tatgattgaa      4200
     cgggtccatc gacagttaaa ggcagccatt atgtgtcacc aggactcatg ggtccgctcc      4260
     ttgcctctgg ttctcctcgg catgcggtct gcgtttaagg aagacctgaa cgccacagcc      4320
     gccgaaatgt tgtatggkga acctcttcgc ctgcccggtg agttgatcgt cgaaacaggt      4380
     gaacctgacc aattcggaga ccctgctgat tttgttgtac agcttcgacg taaaatgtct      4440
     gctatacgac ctatccctgc atctcggcat tcagagccat caaaatttat attcaaggac      4500
     ctctccttgt caacgcacgt gttcctcagg gatgactcgg tcagacgacc actacagccg      4560
     ccatattccg gaccgtaccg tgttgtcagc cgcgccagtg atggaaaaac cattactcta      4620
     gaggtaaatc acaaaactgt gaccgttagt attgatcgcg tgaaaccggc acacatggaa      4680
     catgcaactc atacttctga cgagcacaat cacaggttca cagaacccac gacacacaca      4740
     accgttaacc tccctaggag accaaatgag catgagaagt ccagggacac cagtctaaac      4800
     gctcataaat tgccctacac tacacgatcc ggtagacgtg ttaaatttaa ggaactcccc      4860
     gattatgaat aggtaatcgg gttatccctc tccgtggggg ggtgg                      4905
//
ID   Gypsy-35_HeAr-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-298
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5612-5612 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 298 BP; 85 A; 65 C; 50 G; 90 T; 8 other;
     tgtggcgttt ccgaacgcca ctgcgctggc aacccgagaa ttttattatg ttctgwcata        60
     gacatttttc twatctatgg aacacatcct tttttccaac ggacacgaat aattacttta       120
     cataaaaact actttattat aaagccttck agtaaamcww tattcctccg tkgtgwtaat       180
     agctcgtagt gataatatat gtatcgatgg cgatcactca aatacatggt tgacacgtat       240
     taatgacttt cattcgaacc gctctgtgac gaacaaaggg gacccctgag ttcccaaa         298
//
ID   Gypsy-35_LMi-I repbase;    DNA;    INV; 4213 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4213
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(220..816,687..992,1050..1904,2105..2611,
FT                 2386..3891,3842..4210)
FT                 /product="Gypsy-35_LMi-I_1p"
FT                 /translation="MTNKPQVKVRTPQFLPDKLELWFAMLELAFEQNGIND
FT                 ERTKFAVAVNALDARAAAAGEDVILKPPTARQYTCLKELLVDRMCKPVEQR
FT                 INQVLRFEQRGDRTPSEYRRHLRSMVGEDELPDKTLYHVWLAQLPAAVKAA
FT                 VVTREKDDLQVLLKIADKVCTTLDGTHTTNVTMVTDDCGQQEVAAIQKRQN
FT                 VDVTKQCTSQSLYDIGWNTYHKRDNGYRRLWTARSCSNTETTERGRYKAVH
FT                 ELTGQVEALQRQVANLLQKNVTKHSTNDQQEQLCWYHRRFGDREEVHATVR
FT                 LPKWQQRPAEGRGTVSNSSSLATRHSVVCQRCEVRSLLPNSGSDVSALPAN
FT                 DCRNATAVQHTHLTAANKSPIATFGNCEIEVDLGFRQSYRWTFVIAEVSEA
FT                 ILGADFLWHTGIEVLIKTAQIRKDGEVVSGNLGRGAIQNTNYAQSLATQST
FT                 DDHMETKSTKVLHTTVHHIKTTPGQPVSQRPRRLAPDKYLEAKAEFEDLLE
FT                 SGVIRSSDSPWASPLHFVKKKDGTWRPCGDYKKLNARTVPDRYPVPNIKDF
FT                 TNMLAGATIFSVVDCKKAYHQIPVAEEDIPKTAVTFRLIYKVHIPKKXVTF
FT                 LGYEVSATGIRPLTDKIEVIEGITQPTNYQELRRFLGAVNFYRPHMPGAAE
FT                 VQAPLTSLLVGKNTSGKWPLKWTPQMQKAFEQIKTVLKEAVLLAHPVPQAP
FT                 LAIVVDASQQAIGAALHQYVKKHWQPLGFFFRANSRLHRLNGARMTENCWQ
FT                 CMKQTNKNSTKRGSSISTPSTASTFSYSSRCKSAGNRSSPPSVREKTLATF
FT                 RIFFSRKLTPAQVKWSAYDRELLAMYEAVKYFRPYVEARTFTIYTDHKPIT
FT                 FAFSKNKDDCSPRQSRQLEFISQFTTDLRHIKGAENIVADFWSRVEIISQT
FT                 VDYEQLAAAQARDPQLLEYRHNAATGLQLQLVQPAGAKVGIWCDMSRDKPR
FT                 PFVPQELRKMFFDSIHGLAHPSANTSVKLMADRFVWPSINKDCRLWAKTCT
FT                 ACQRSKIGRHVHKPVGQFPPTTERFAHVHLDIVGPLMPSEGYRYLLTIVDR
FT                 YTRWAEAVPLADISAETVARVFLSAWIARFGCPLDVTTDQGRQFESTLFLE
FT                 LAKLCGFRHHHTTAYHPASNGMVERWHRTLKAALMCHENSWMSALPLVLLG
FT                 LRTAYKPDLGVSTAELVYGETLRLPAEFFVASPNTSVEEVPYVLQQVRRHI
FT                 AQLRPVPGSRHGDNKPFIHKALSTCSHVWLRTDAVRSPLQPPVCWAVGQTQ
FT                 YDHHCNHPYAGPFKVLTRGEHTMQIECNGKQQTVSLERLKPAHMLGXDEER
FT                 EHERQEEIVPTQEDWQEEESRLDGSVLPSSPQAAQEEKLPTPARYSRAGRR
FT                 IKYKYPHVPGAPLYRGG"
XX
SQ   Sequence 4213 BP; 1272 A; 937 C; 1097 G; 903 T; 4 other;
     aattggtgac cccgcaagct gcaaatactc tagaaataaa tacttcagtc atgccgagag        60
     acgtaatatc gtcgggtgaa gggaaaacgc ggacgctcac aaaggagaaa ttagaagacc       120
     ttcgcgaaga gctgcagaga caaattgaag agttgaagct gagatggaga accaagagca       180
     cactgtactc cacagacgga agttagcagc agctctgcaa tgacaaacaa gccacaagtt       240
     aaagttcgta cgccacagtt tctaccagac aagctggaac tttggtttgc gatgctcgag       300
     cttgcgtttg aacagaatgg gattaacgat gaacgcacga agtttgcagt ggcagtaaat       360
     gcgttagacg ccagagcggc ggctgcaggt gaggacgtca tacttaaacc tccgacggca       420
     cgacaatata cgtgcttgaa agagttgttg gttgacagaa tgtgcaaacc ggtagagcaa       480
     cgtattaacc aggtactgag gttcgagcag agaggagaca gaacgccctc tgaatatcgg       540
     cgacacctaa gaagcatggt tggcgaggat gagttaccag ataagacgct gtatcatgta       600
     tggctcgcgc agctgcctgc agcagtaaaa gcagcggtag tgactcgtga aaaagacgat       660
     ctgcaggtat tgttaaaaat agctgacaaa gtttgtacga cattggatgg aacacatacc       720
     acaaacgtga caatggttac agacgattgt ggacagcaag aagttgcagc aatacagaaa       780
     cgacagaacg tggacgttac aaagcagtgc acgagctgac aggacaagtt gaagcactgc       840
     agaggcaagt ggcgaatttg ctgcagaaga acgtaacaaa acatagtaca aatgaccaac       900
     aagaacagct ttgttggtat catcggcggt tcggcgacag agaagaggtg cacgcaaccg       960
     tgcgcttacc caaatggcag cagcggccgg cgtaggcgcg gcggccgcca cacccagcaa      1020
     gagcgcctgc aagggggagg tgagcatgag agggacgcgg cacggtgagt aactcgtcwa      1080
     gcttagccac tcgtcactca gttgtatgtc agagatgtga agtcaggtcg ttactaccta      1140
     attcagggtc agacgttagt gctctgccag caaatgactg tagaaacgca accgcagtgc      1200
     agcacacaca tctcacagca gcgaataagt cccctatagc gacattcgga aattgcgaga      1260
     tagaagtaga tttagggttt cggcaaagct accgatggac ctttgtaata gcggaagtat      1320
     ctgaagctat actaggagcc gatttcttgt ggcatacggg tatcgaagtg ctaatcaaga      1380
     cggcacagat tagaaaagat ggagaagttg tctctggtaa tttagggcga ggagctatcc      1440
     aaaatacaaa ttatgcccag agtttagcga cgcaaagcac agacgaccat atggagacaa      1500
     agtcgacgaa ggtgttgcat acaacagtgc accatattaa gacaacaccg ggtcagccag      1560
     tctcacagcg acctcggagg ttagccccag acaaatattt ggaggccaag gcggaatttg      1620
     aggatttgtt ggaatcaggc gtgatacgta gctctgacag cccgtgggca tcaccgttac      1680
     attttgtaaa aaagaaagac ggcacctgga ggccctgtgg cgactacaaa aaactaaacg      1740
     cccgtactgt tccagaccga taccctgtac caaacattaa ggattttact aatatgctgg      1800
     caggtgctac aatatttagt gtcgttgact gtaagaaggc gtatcaccag attccggtcg      1860
     cggaagagga tataccgaag acagcagtca cctttcggct tatatgaata tgtcaggatg      1920
     ccttttggac taaagaatgc tgcacagacc tggcagcggt ttatcgatga ggtactacga      1980
     ggttgcagtt ttgtttcgcg tacctagatg acatattggt gttctcagag tcagagcagt      2040
     tgcatgaaga acatctcagg gccattttcg aacgcatcaa gaaatacgga gtaatggtaa      2100
     atgatacaaa gtgcacatac cgaaaaagca kgtgacattt ctcggttacg aagtatcagc      2160
     aacaggtata cgcccactga cagataagat agaagtcatt gaaggaatca cccaaccaac      2220
     taattatcaa gaacttagaa gatttttagg ggcagtaaat ttctatcgac ctcatatgcc      2280
     aggggcggct gaagtgcagg cacctttgac atcactgctg gtgggcaaga acacgagtgg      2340
     taaatggcca ctgaaatgga ccccacaaat gcagaaagca tttgaacaaa taaaaacagt      2400
     actaaaagag gcagttctat tagcacaccc agtaccgcaa gcacctttag ctatagtagt      2460
     agatgcaagt cagcaggcaa taggagcagc cctccatcag tacgtgaaaa aacactggca      2520
     acctttagga tttttttttc gcgcaaactc acgcctgcac aggttaaatg gagcgcgtat      2580
     gacagagaac tgctggcaat gtatgaagca gtgaagtatt ttcgcccgta tgtggaggca      2640
     aggacattca caatttatac ggaccacaag cccattacat ttgcgtttag caagaataaa      2700
     gatgactgtt ctcctcggca atcccgacaa ctggaattca ttagtcagtt cacgacggat      2760
     ttgcgccata ttaagggagc tgagaacatt gtcgctgatt tctggtcaag agtggaaatc      2820
     atctcccaga cagtcgacta tgagcagctg gccgcagcac aagccagaga cccacagcta      2880
     ctagagtatc ggcacaacgc tgctacagga ctgcaacttc aacttgtgca accagcaggt      2940
     gcgaaggttg gcatttggtg tgacatgtca cgcgataagc ctcggccttt tgttcctcag      3000
     gagctgcgga agatgttctt cgatagtatc catggactag cccatccaag tgccaacact      3060
     agtgtgaaac ttatggctga ccgtttcgtg tggccaagca ttaacaaaga ttgccgtttg      3120
     tgggcaaaaa cgtgtactgc atgccaaaga agcaaaattg gcagacacgt tcacaaacca      3180
     gttggacagt tcccaccaac aacagaacgt tttgcacacg tacatttaga catagttggg      3240
     ccacttatgc cctcagaagg gtaccgttat ttacttacta tagtggatcg gtacacgcgg      3300
     tgggcagagg cwgtaccact ggcagacata tcagcagaga cagtggctcg agttttcttg      3360
     tcagcatgga ttgcacgatt cggctgtcca ttagatgtaa ccacagatca gggccgtcag      3420
     tttgaatcga cattgtttct ggaactggcc aagctgtgtg gattcagaca tcatcacacg      3480
     actgcttacc atccggcaag taacggcatg gttgaacgct ggcacaggac cttgaaggct      3540
     gcactgatgt gccatgaaaa cagctggatg tcggcattac cattggtgtt actgggcctc      3600
     agaacagcgt ataagccaga tttgggagtg tccacggcag agttggttta tggtgagact      3660
     ttgcgcctgc cagcagaatt ctttgtggca tcaccaaata caagtgtgga ggaagtacca      3720
     tatgttcttc agcaggtgcg aagacacata gcccagctcc gaccagtgcc aggctcacgt      3780
     catggagaca acaaaccatt tatacataaa gcacttagca catgctcaca tgtgtggctg      3840
     aggacagacg cagtacgatc accactgcaa ccacccgtat gctgggccgt ttaaagttct      3900
     gacaagaggc gaacatacta tgcagattga gtgcaatgga aaacaacaaa ccgtgtcttt      3960
     ggagcggtta aaacccgcac atatgctggg gmtcgatgaa gagagagagc acgaacgaca      4020
     ggaggaaata gtgcctacac aggaggattg gcaagaagaa gagtcaagac tggatggtag      4080
     tgtgctaccc tcatctcctc aagcagctca ggaggagaag ttaccgacac ccgcaagata      4140
     ttctagggca ggtcgaagga ttaaatacaa gtacccacat gttccaggag ctccgctcta      4200
     ccgcgggggg ctg                                                         4213
//
ID   Gypsy-35_LMi-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-218
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 218 BP; 56 A; 35 C; 44 G; 83 T; 0 other;
     tgtgggattc gctgtcatta aactgaagcg cacacagtgc aagttgttct ttggacgaaa        60
     cgagtttaac agctttgtta ctctttggtt tagataatta ttctgttact gtttacctgt       120
     caaatatgct tctcgatttg aatcataaag tttggtgtgt tatggtttga gtatcccagc       180
     ctttaattac gcagaatatc gtagtcttta agactata                               218
//
ID   Gypsy-35_MoPha-I repbase;    DNA;    INV; 4984 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4984
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1113-1113 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           291..4673
FT                 /product="Gypsy-35_MoPha-I_1p"
FT                 /note="SAP domain, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MESLRVKLNKFSLSELKEELKKYDLPEKNSKEECVDA
FT                 IMSHFAGYQGPTDNTSEWKSIQGDEEDRLLQEGTVPADSQIPQVVMRHMMQ
FT                 QIAFLTERVSQLSTLNVNPTQNTSSDLRNPLATTRNISVEDHQSQFLSGHS
FT                 NAYRPEFATVPPAQAVSLLASQIPHFHGSEDDDVELWLNKIERIATVHGAS
FT                 SNIKLLAATTKLQKTAKEWFELDVELVNESWDIFKAAIAQRFRRRLSYQET
FT                 MQKVESRKWNYSKESFQDYVTHKMKLLLPLRLPPREIIQFLISGITNFVIR
FT                 STAASLNVNTVDEFLDRMHFTIKAAGATPKRSSPVLPKKDKSRDSKDLHNT
FT                 KDSSQKKPSSPVLSKDVVCAYCKAKGHVKSDCYKLKRKEQSTSTLVPAGSP
FT                 SPVAAAAELKASSPSASSQEDSPLVGCVDADSQRQLRLSDQIVEINSLNGV
FT                 PCSLHALLDTGSPVSFIRESIYKIFFGQNVCYNSANAKKFRTLNDSKIEVV
FT                 DSKKTLVGLSSSPGSLFHVDFQIIQNDNWPTHVVLGRDFLSSNKLTLVFSP
FT                 SDLKSRECLKLINEVASAEIYEEDEEDQSIVTPNSVKTDCGPEVDLKVCNL
FT                 INEINSAPVEKVCDNYNVSISLKDTSTYAFAPRRFAYKERNDLREVIDDLL
FT                 SRNIIKISTSPYCARVVPVRKRNGQLRLCVDLRPLNARVIKQKYPFPLIED
FT                 CLARLGGKRIFTLLDLKDGFHHIDIHPNSTKYFAFATPDGQYEYLKLPFGY
FT                 SEAPAEFQKRLIQILHPLIRQDKLLVYIDDILIATNNVDENLEILYQTMLL
FT                 LKQYSFELNFRKCIFLKQSIEYLGYMISEQGITLSNRHVEAVKRFPIPTDV
FT                 HKLQRFLGLVSFFRRFIPNFATIAKPLYSLLKKSVPFNFVQNCLNAFDALK
FT                 KSLLSFPVLRLYNPKAHTELHTDASSIAIAAILLQKQDTGFLAPIAYFSQA
FT                 TNDAESRYHSFDLEMLAVVKSIERFHIYLYGIDFTVITDCYAIVYALNKAN
FT                 LNPRIVRWSIRLQNYTFKIVHRQGEKMAHVDALSRVAAPIDSMPLEKELEY
FT                 RQLADANIEVLAKRLENSEHEKFELLDGLVYRKFSDRPRFYVPDSMVQTLL
FT                 RVYHEDNAHCGVEKTLQGLMVNYWFPSMRKKVQQYIENCLTCLISNTSSHT
FT                 KEGEIQIYDTPKVPMHTLHADHFGPLQVSTSGHKHILLLIDAFTRFTWLFP
FT                 VRSTTSKETIKNLTLVFNTFGNPIELVSDRGTAYTSFEFKEFLEKRSIKHR
FT                 LIAVAAPWSNGICERVNRFLKSSLRKLINDQKTWSDKVEQIQNIINNTFHS
FT                 SIRNSPSMLLLGYEMRNQIDSPLIQVLNDISKSTLSNQDLYDLRDKNRDIA
FT                 CQASDKLKNYNKLYYDKRHKSPSVYREGDYVFIRDSSVKPGEEKKFKAPYK
FT                 GPYLIRKVLNKNRYVVTDIPGFNNAQKPYNSILSPDRIKPWVKPIVN"
XX
SQ   Sequence 4984 BP; 1480 A; 986 C; 969 G; 1549 T; 0 other;
     gccacgaaat tcagaagtgg gatgaagaaa tatagtttac aaaccacgta gcagtttgtg        60
     ccgtcgtact aatcatattc gtttcgcgaa ttcgtaactt cgctcaagtt atagtctctc       120
     cgccatattg gctcgttcgc gcgtgttgtc ttcgtgctcc cgcgtttagt tcttccgcca       180
     ttttgagtgt gtgctggaat tttccatagt caacggtttt tctttctact gccgtacttt       240
     tgttttactg tttgccgtcg atgtgaactc gtcggtgata ccacgtaata atggagtcat       300
     tgcgtgttaa attaaataag ttctcgcttt ctgaacttaa agaagagctc aagaaatatg       360
     accttcccga gaaaaattct aaggaagagt gtgttgatgc gatcatgtcg cattttgcag       420
     gctatcaagg cccgacggat aatacatccg agtggaaaag tatccaagga gacgaggaag       480
     atcgtctgtt acaagaaggt actgtacccg ccgattctca aatacctcaa gtagtgatgc       540
     gtcatatgat gcaacaaatt gcattcctca cggaacgtgt ttctcagctg tcaacgttga       600
     acgtaaaccc gactcagaat acatcgtcag atttgcgtaa tccactggct acgacgagga       660
     atatcagtgt cgaggatcat caatcacagt tcttgtctgg acattcaaat gcttatcgac       720
     ctgagtttgc aaccgtgccc cctgcgcaag ctgtctctct tctggcttcg cagattcctc       780
     attttcacgg ctcagaagat gatgatgttg agctctggct caataaaatt gaaaggattg       840
     ctacagtaca tggcgctagc agtaacatca aattgttagc cgctacaacc aagctgcaaa       900
     aaactgcaaa agaatggttc gagctagatg tcgaacttgt gaatgaatcg tgggatattt       960
     ttaaagctgc catcgcccaa cgatttagac gaagactctc gtatcaagag acaatgcaga      1020
     aagttgagtc tagaaaatgg aactactcaa aggagagctt ccaggactac gttacacata      1080
     agatgaagct gttactccct cttagactgc cacctaggga gataattcag tttctcatca      1140
     gtggcattac taattttgtc attcggagca ccgctgcttc tctgaatgta aacacagtgg      1200
     atgaattcct agacaggatg cattttacca taaaagccgc aggcgcaacg ccaaaacgtt      1260
     catcacctgt tttgccaaaa aaggacaagt cacgagactc caaggacttg cataatacca      1320
     aggactcttc tcaaaagaaa ccatcttcac cagtgctctc gaaggatgtg gtgtgtgcct      1380
     attgcaaggc aaagggacat gttaaatcag actgttacaa gttgaagcgc aaagagcagt      1440
     ctacatctac gttagtgccc gctggttcac cctctccggt agctgccgct gcagagctca      1500
     aggcgtccag tccgtctgct tcttcccagg aggattcacc attggttggc tgtgttgatg      1560
     cagattccca acgtcaactc cggttaagtg atcagatcgt tgaaattaat tctttgaacg      1620
     gtgtaccgtg tagtttacat gcattgttgg acaccggaag tcccgtttca tttattcgtg      1680
     agtcaattta taagattttc tttggacaaa acgtttgtta caatagcgct aacgctaaga      1740
     aatttcgtac tttgaacgat tccaaaattg aagtagttga tagtaaaaag actctagttg      1800
     gcttatcttc ctcaccgggg tcattgtttc atgttgattt tcaaataatt caaaatgata      1860
     attggcctac acatgttgtt ttaggacgtg attttttgag ctccaacaaa ttaacgcttg      1920
     tttttagtcc ttccgactta aaatcgcgtg agtgtttaaa actgattaat gaagtagctt      1980
     ccgccgaaat ttatgaggaa gatgaggaag atcagtcaat agtaacgccc aacagtgtca      2040
     aaactgattg cggtccagaa gtagatttaa aagtctgtaa tttaattaac gaaattaatt      2100
     ctgctccggt agaaaaggtt tgtgacaatt ataatgtttc gatctctctt aaggacactt      2160
     cgacgtatgc ttttgcaccc cgtcgctttg cgtacaaaga aaggaacgat ctgcgcgaag      2220
     ttattgacga tttattgtca agaaatatta ttaaaataag tacttccccc tactgtgctc      2280
     gagtggtgcc cgtgcgcaag aggaatggtc aactccgact ctgtgttgac ttaagaccgt      2340
     tgaacgctcg agttatcaaa caaaagtacc cgtttcccct aatagaggat tgtcttgcac      2400
     gattaggagg caaaaggatt ttcactttgt tggatttaaa ggatggtttc catcacattg      2460
     acattcatcc aaattctact aaatactttg cttttgcgac cccagatggt cagtatgaat      2520
     accttaaact cccttttggt tattcagaag ctccagccga atttcaaaaa aggctaattc      2580
     agatcctcca tcctctaatt cgccaagaca agcttctagt ttacatcgat gacattttga      2640
     tagccacgaa taatgtggat gaaaatctgg aaattttgta tcagaccatg cttctattga      2700
     aacaatattc ttttgaattg aattttcgaa aatgtatttt tttaaaacaa agtattgaat      2760
     atctaggtta tatgatttca gagcaaggaa ttactttaag caataggcat gtagaagccg      2820
     taaaacggtt tccgattcct acagatgtac ataaacttca acgtttctta gggctagtta      2880
     gtttcttcag acgtttcata cctaattttg ccacaattgc aaaacccttg tattcattac      2940
     tcaaaaagtc tgttcccttt aactttgttc aaaattgttt aaatgccttt gatgctttga      3000
     aaaagtcttt gctttctttt cctgttttaa ggttatataa tccaaaagct cacacggaac      3060
     tccatacgga tgcgagttca attgctattg ctgcaatcct attgcaaaag caggatacag      3120
     gttttctggc cccaattgca tactttagtc aggccaccaa tgatgccgaa agtcggtacc      3180
     attcattcga tcttgaaatg ctcgcagtag taaagtcaat tgaaaggttt cacatctatc      3240
     tatacggtat agatttcaca gtcattaccg actgttatgc aattgtttac gctttgaata      3300
     aagctaatct aaatccacgt attgttcggt ggtcgatccg cctgcagaat tacacattca      3360
     aaattgttca tcgacaaggt gaaaagatgg cgcatgtcga tgctttgagt agagtcgctg      3420
     ctcccattga ttcgatgcca ttagaaaagg aattagagta tcgccaattg gctgatgcta      3480
     acatcgaagt tcttgctaaa cgtttagaaa atagcgaaca tgaaaaattt gaattgctag      3540
     atggtctagt atatagaaaa ttttcagacc ggcctcgttt ttacgttccc gactcaatgg      3600
     ttcaaacact attgcgcgtt tatcacgaag ataatgctca ttgcggtgta gaaaaaacac      3660
     ttcaaggttt aatggtcaat tattggtttc cgtcgatgcg gaaaaaggtt cagcaataca      3720
     ttgagaattg tttaacttgt ttgatttcaa atacttcctc tcacacaaag gaaggcgaaa      3780
     ttcaaatcta tgatacgcct aaagttccga tgcatacttt acatgctgat cattttggac      3840
     cgttacaagt gtcaacatcc ggtcataaac acattttact tttgattgat gcctttacca      3900
     gattcacatg gttgttcccg gtaaggtcca caacttccaa agaaacaatt aaaaatttaa      3960
     cgttagtttt caatactttt ggaaatccga ttgaacttgt ttctgatcga ggaactgctt      4020
     acacctcatt cgaatttaaa gaattcctag aaaagcgtag tattaaacat aggttgattg      4080
     ctgttgctgc gccatggtca aacggcattt gtgaacgcgt taacagattt ttgaaatctt      4140
     cgctgcgtaa gttgattaac gatcaaaaaa catggtcaga taaagtcgaa cagattcaga      4200
     atatcattaa taataccttt cattcatcta tcagaaactc gccgtccatg ttacttctcg      4260
     gatatgagat gagaaatcag attgattctc cattaattca agttttaaat gacatttcaa      4320
     aatcgacctt gtctaaccag gatttgtatg atctccgtga taagaatcgg gatatagcgt      4380
     gccaagcttc cgacaagctt aaaaattata acaagttgta ttatgataaa cgtcacaaat      4440
     ctccgtcagt ttatcgagaa ggagattatg tatttattcg ggactcctct gtaaaaccag      4500
     gagaagagaa gaaattcaag gcaccatata aaggtcctta tttaattcgt aaggttttaa      4560
     ataaaaacag atacgtcgtt acggacatac caggtttcaa taatgcgcag aagccgtata      4620
     attcaatttt gtccccagat aggataaaac cctgggtaaa acctattgtt aattaaatac      4680
     gtaaaatgat aattccaaat ccacgttata atcatcactc aaatcattta taaaataatt      4740
     ctattggttt tcttttaagt atatttttat tagtttttaa gcatatgcgt ataatactct      4800
     tttcttgtat tttgacagct cgtacttgtg taatcttagt atttagttgc gaaccgtcca      4860
     cttggtaata atttgtagtg tttattcttt aaggttcaat ttatttttaa aagtcttatt      4920
     tgtagtttct ctcagtgatt atctgcagtg ttcgggtcga acagccaatg caggctggcc      4980
     gagc                                                                   4984
//
ID   Gypsy-35_MoPha-LTR repbase;    DNA;    INV; 516 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-516
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1199-1199 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 516 BP; 125 A; 132 C; 113 G; 144 T; 2 other;
     tgtaaggtag ctctagtacg cgacaccaaa ttttgttttt cgcgccactt gtgaagaaat        60
     ggcattgcgt ttgccgaggc gctcgagtca cctaatccgc gacagcgatt gggccttccg       120
     cccacgtgat atattgtact acgccttatt ggcgtaacag cagtttcgtg cacactattg       180
     gtcgattgat gcgacaccta gctgtgcaga cgacaaggaa gaagaagaag agcgcgcgga       240
     ggagaacwct ctckcggtgt acggctgtac gcaaaaaaaa gacgagatgt acgcgagtgt       300
     tcgtgctacc aaataaaacc agtattttca ttaactgtga attagtgctt tcttctgcta       360
     cgtcgtggtt gtgtccaatt ccctattccc caagctatct atcctgacat taaaaccccg       420
     ttacgagagt ttttctactc aatctccctc tcgaacgttc cagatctttc ctttggcttt       480
     ccgcggttct tttaaaatca gtacccccgc cttaca                                 516
//
ID   Gypsy-35_MSe-I repbase;    DNA;    INV; 5616 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5616
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 912-912 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..5349
FT                 /product="Gypsy-35_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDESEVMPVIQSEPTYLNHDNEDWRRQTRERDXSEGV
FT                 EGSRQKRQSHKRSDKYHKSKSRSTSRAVSRQRVEHGESRHQDSSLISTLSK
FT                 LNNNHHGNYDEDFYPRRPRSRQSRKRSRHDEYSGQRSGRSRERLYKRRRFI
FT                 NTTARKRYYSTSSDEGRATGRRRYQSSSDSEDDLRLMNKRRRSSSRRSRFA
FT                 HNDTRNINHNFRDMSRDDKSILNKFLDILTNVKGQTTSKLSLTNVLPEFDP
FT                 ISKDQTIITWLTKVEECAEIYGWDEREIIHFALPKLSGIAKTWYQGLNTVL
FT                 YSWNQWKRKLLESFPCRDDYAELLTEMLAKRARYGESLEQYYYSKINLINR
FT                 CKIQGRKAVDCLLHGIEDRAVRVGAQAARFREPEEVLKYFKTVKVGYSRDM
FT                 TDKLKIDRKNSNPTTANKMKLDLSKKIKCHNCNEDGHKSFKCNKTPSKCTF
FT                 CGRIGHLELYCRTKQHDSTIIKDQAPETNQEKLIALLNDSEKANEKYIITI
FT                 KINDNFVSAYVDLGSQCTLIKESIAKKLSLKCSSEKLPTLRGIGGHHVQPL
FT                 GKATVAITVQDITENVEVFVVDDLVLRYPVLLGHSFTEKPNITITKTPDQI
FT                 LFEKCPNLKVYLTARESTTLKPNELMAMAIESKCKFKGQIFVNGTIRGQFN
FT                 NEYYLLPGEYTLNEGIGRVFVQNLCNHNIXLREGSLITRAIPVTCSLNVLP
FT                 VCFDDPAVKEIIRCGSQLTCDQKSLVQDLLAKYSDCFASGLKDLGFTTAGE
FT                 MKIELLDSEPVVYRPYRLSFGERTQVRQMVQEMIDAGIVKESCSPYASPIV
FT                 LVKKKTGEKRLCIDYRALNRRTKKDHYPLPHIEDQLDRLSGNNLFISLDLA
FT                 SGYYQIPIEEKSQDKTAFVTPDGQFQFMRMPFGLVNAPSVFQRTINKILSD
FT                 AKNKFALIYMDDVLIPARTFEEGMTRLEEVLCLLRKGGLTLKLEKCNFFLD
FT                 SIDFLGFQIEAGGIQPGIKKTEAISKFPSPKSQHELRQFLGLASFFRRFVQ
FT                 GFAIIAGPLTDLLKKNVEWCWGPQQDEAFQSIKSVLTQRPVLALYDPKNET
FT                 QVHTDASKHGIAGILLQKNDDDQLKPVSYYSRKTTPDEQKYHSFELETLAV
FT                 VSSLSRFRTYLIGVPFKVFTDCNALRTTLTKKDLVPRIARWWVQLQEFDCE
FT                 IEYRPGSAMKHADALSRNPVGDAVEESHVLDILNVDTEDWISTVQSNDSEV
FT                 IRIKEILNDPEAKNVAEVIKNYRLKNDKVYRIIGEGNDIRWLVPKGVRWQI
FT                 AKMNHDDVGHFSFEKTLTRIQQSFWFPKMRKFVKKYVASCLECAYHKGVSG
FT                 KQQGQLHPIPKIEVPFHTIHADHLGPFIKSKKGNCYILVIIDGFTKYINIT
FT                 PVRNTKSTTSIKVFREHISYFGAPSRLITDQGTSFTSNTFRAFTKTNGIKH
FT                 ILNAVATPRANGQAERFNRTILDALAAKTHSQDDRNWDEYIPDIQIGLNTT
FT                 IHKTTGKTPSELLFGFKINSSSENILNEVISDTTDTSANNLEHIRETASKR
FT                 ITEQQQKDKDRFDTKRKNTHNYATGDLVSVKRDVPSDGKSKKLVNKYQGPY
FT                 RILKSLPNDRFVIEDTPLTRKSGRPRYENIISVDKLKPWLSFDKNFNSSSD
FT                 NSSDEDCNDXHD"
XX
SQ   Sequence 5616 BP; 1922 A; 1046 C; 1100 G; 1541 T; 7 other;
     tctcagaagt gggatkggag attctttttg tttwaaaaag aactcgtaaa ccctagctca        60
     aatcgcgtgt cattccagcc gacttattta cctccttgtt ggcactttaa actgctcagt       120
     attgtaaaat tttactgttg cctgattctc aacaattttt tttttctttt cgctctctat       180
     ctttcgtaat atatttaaat gcaaagttac ggtgcctcat aatatcaata ctcttcgtaa       240
     agcttataga taaagataaa tgagtcttgg cgtcacatat cactactaca taaatattat       300
     tatcgttatt atatagtgca ttttttttaa tccattatga aatcatttct ttaattttct       360
     taactaacaa tacaggtacg ctttataata atttaatcgc attgggccat aattgataaa       420
     acatgttaag tatawagatt tctaagttcc agggcaataa tggacgaatc tgaagttatg       480
     cccgtaatcc agagtgagcc tacctatctt aaccacgata atgaagactg gaggaggcag       540
     actcgggaaa gagatmtgag cgagggagtg gaagggagcc gacaaaaacg gcaaagccac       600
     aaacgctctg ataaatatca taagtctaaa tcacgtagca cgagtagggc ggtgtcgcga       660
     caacgtgtag aacacgggga gtcgcgtcat caagactcgt cattaataag cacattaagt       720
     aaattaaata ataaccatca tggtaattac gatgaagatt tttacccgag aagacccagg       780
     tcacgacagt ctcgtaagcg ttcacgtcat gatgaatata gtggacaacg gagtggcaga       840
     tctagagaga gactctacaa aagaagacgt tttattaaca ccacggcacg caaaagatat       900
     tatagtacat cttccgacga ggggcgtgca acagggagaa gacgatatca atcgtcatca       960
     gacagcgagg acgacttaag actaatgaac aaaaggcgga gatcttcatc tcgccgttcg      1020
     cgttttgctc acaatgacac acgtaacata aatcataact ttcgggatat gtccagggac      1080
     gataaatcta ttttaaataa atttttagat atactaacta atgtaaaggg acaaaccact      1140
     tctaagcttt ctttgacaaa cgttctgcca gaattcgatc caatatccaa ggatcaaacc      1200
     ataataactt ggcttaccaa agtagaagaa tgcgctgaaa tatatggttg ggatgaacgc      1260
     gaaataattc actttgcact tccaaaacta tcaggcattg ccaaaacgtg gtaccagggg      1320
     ttaaacacgg tactttacag ttggaaccaa tggaaaagaa agcttttgga gtcgttccct      1380
     tgtagggacg attatgccga attactaacc gaaatgctgg ccaaacgagc gcgttatggt      1440
     gaatcactag agcagtatta ctattccaaa ataaatctaa ttaatcgatg taagatacaa      1500
     ggtagaaaag cagtagattg ccttcttcat ggtattgaag atcgagccgt tagagtaggc      1560
     gcacaagctg ctcggttcag ggaaccagaa gaagttttaa aatattttaa aactgtaaaa      1620
     gtaggataca gtagggacat gacggacaaa ctaaagatag ataggaagaa ctcaaatccg      1680
     accactgcaa ataaaatgaa attagatctt tcaaaaaaaa ttaaatgtca caactgtaac      1740
     gaagatggtc ataaaagttt taaatgtaac aaaactccaa gtaaatgtac gttttgcggc      1800
     agaattgggc atttggaatt atattgtagg acaaaacaac acgactccac aatcataaaa      1860
     gatcaggctc ctgaaacaaa tcaagagaaa cttatcgctt tgttaaatga ttcagaaaaa      1920
     gctaacgaga aatacataat tacaatcaag ataaacgata actttgtctc ggcatatgtc      1980
     gacttgggga gccaatgtac tcttattaag gaatctatag ctaaaaaact gagcctgaaa      2040
     tgtagttcag aaaaattgcc aaccctgcgg ggtatagggg gccatcatgt ccaacccctg      2100
     ggaaaagcta cagtagctat tacagtgcaa gacataacag aaaacgtaga agtttttgta      2160
     gtagatgatc ttgttttaag atatcctgtt ctgttaggcc attcatttac cgaaaaaccg      2220
     aacatcacga taacaaagac acccgatcaa attcttttcg aaaagtgccc taatttaaag      2280
     gtttatctta ctgctcgaga gagtacwacc ttaaaaccta atgagctaat ggcaatggct      2340
     attgaatcta aatgtaaatt taaaggccaa atatttgtta atggtacgat tagaggtcaa      2400
     ttcaataatg aatattactt actacctgga gaatacactc tcaatgaagg aataggtaga      2460
     gttttcgtac aaaatttatg caaccataac atcktgctac gggaaggatc tctcataaca      2520
     cgtgctatac ctgtaacttg cagtttgaac gtattacccg tgtgttttga cgaccccgca      2580
     gttaaagaga tcatacgttg tggttcacaa ctcacttgcg accagaaatc tttagtgcag      2640
     gatttgcttg ccaaatattc agactgtttt gcttcagggc tcaaagatct tggttttacc      2700
     actgctggag agatgaagat tgaactccta gattctgaac cagtagttta tagaccatat      2760
     cgattgtcat ttggtgagag aacacaagta cgccaaatgg ttcaagaaat gatcgatgca      2820
     ggaattgtaa aagaatcttg ttctccgtac gcaagtccga tcgtgttggt caagaaaaaa      2880
     acgggtgaaa agagactatg cattgattat agggctttaa accgacgtac taagaaagat      2940
     cattaccctc tccctcatat agaagaccaa ttagatagac tttcgggtaa taacctattt      3000
     atttctcttg acctagcatc tggctattac caaatcccca tcgaagaaaa atcacaagac      3060
     aaaacagcat ttgtcactcc agatggacaa ttccagttta tgagaatgcc atttggtttg      3120
     gtaaacgctc cgtccgtttt tcaaagaacg attaataaaa tcctttcaga tgctaaaaac      3180
     aaattcgctc tcatttacat ggatgatgta ctcatccctg cccgaacatt cgaagagggt      3240
     atgactcgac ttgaagaagt cctatgtctc ttaagaaagg gtggtctcac ccttaaactg      3300
     gaaaaatgca attttttcct cgactctatt gacttcttag gttttcaaat agaagcgggc      3360
     ggaattcagc ctggtattaa gaaaactgaa gcaatatcga aattccctag tcctaagtct      3420
     caacatgaac ttcgacaatt tctgggacta gccagcttct ttagaaggtt cgtgcagggc      3480
     tttgccatca tagctggccc cctgacggac cttcttaaga aaaacgtgga gtggtgttgg      3540
     ggaccacaac aagacgaagc atttcagtca attaaatctg tgttaactca gagacctgta      3600
     cttgcattat atgatcctaa aaatgaaaca caggttcata ccgatgccag caagcatggt      3660
     atagctggta ttttactgca aaaaaatgat gacgatcaac taaaacctgt atcatattac      3720
     agtcgaaaga ctacacctga tgaacaaaaa taccactctt ttgaattaga gacgttggca      3780
     gtggtatctt cacttagtag atttcggaca tatctcatag gtgttccctt caaagtcttt      3840
     actgactgta acgctctcag gactacgtta accaagaaag atctcgtccc tcgtattgcc      3900
     cggtggtggg ttcaactcca agaatttgac tgtgagattg aataccgtcc agggtctgct      3960
     atgaagcacg cagacgcctt aagcagaaat ccagttggag atgcagtcga agaatctcat      4020
     gttctggata ttctaaacgt tgatacagaa gactggataa gtacggttca aagtaatgat      4080
     agtgaagtaa tccgaattaa ggaaatatta aacgatcctg aggccaaaaa cgtcgcggaa      4140
     gtcattaaga attatcgatt gaaaaatgac aaggtctatc gcatcatagg cgaagggaat      4200
     gatattcgat ggttagttcc taaaggtgtt agatggcaga tcgcgaaaat gaatcacgac      4260
     gacgtaggac actttagttt tgaaaaaaca ttaaccagaa tacaacaatc cttttggttc      4320
     cctaagatgc gaaaatttgt aaaaaagtat gtcgcttcgt gtttagagtg cgcgtatcat      4380
     aaaggtgttt caggtaaaca acaggggcag ttgcacccga taccaaaaat cgaggtacca      4440
     ttccatacca ttcatgccga tcatcttggc ccatttatta aaagtaagaa agggaattgt      4500
     tacattttag taattataga tggttttaca aaatatatta atattacacc cgtccgcaac      4560
     acgaaaagta caacatctat taaggttttt cgagaacaca taagttattt tggggcccca      4620
     tctagactca taactgatca ggggacatca ttcacaagta acactttccg ggcgttcaca      4680
     aaaacgaatg gtatcaaaca catattaaat gccgtggcta cacctcgagc taacggtcaa      4740
     gctgaaaggt ttaacagaac aattcttgat gcgttggctg ctaaaactca tagccaagat      4800
     gacagaaatt gggatgaata cataccagat atccaaatag gcctaaatac tactattcat      4860
     aaaacaactg gcaaaactcc ttcggaactt ttattcggtt tcaaaatcaa cagcagttct      4920
     gaaaacatac taaacgaagt cataagtgac actacagata cttccgcaaa taatttagaa      4980
     catataagag aaacggcaag caagcgaatt actgaacaac aacaaaaaga caaagataga      5040
     tttgatacta aaagaaaaaa cacgcataat tatgccaccg gtgatttagt tagcgtaaaa      5100
     cgggatgttc ctagtgatgg taaatcaaaa aagttagtaa acaaatacca gggaccttat      5160
     cgtatattga aatcgctccc taatgacaga tttgtaattg aagacactcc actaactcgc      5220
     aagtctggtc ggcctcgtta tgaaaatatt atttcagttg ataaactcaa accatggtta      5280
     tctttcgaca aaaattttaa ttctagttct gataatagtt ctgatgaaga ctgcaatgat      5340
     gamcatgatt gaatgcagaa tgtgtttatt atatgattgc tatgttaatc tacggtatct      5400
     aatatataaa gatgaaatgt ttgtttgatt ggttgaacac tgtcaatcac tgccaaatga      5460
     gttttcgatg taatttagta tggagatggt tgataatcct gggaggaaca tgagctgctg      5520
     atatatcgga aaatttatgg cgggatcttt tatctgcaca ataagtaaat gtaaaataga      5580
     gcgaagggac tcgctcaaat atcaggatga ccgagc                                5616
//
ID   Gypsy-35_MSe-LTR repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-423
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 961-961 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 423 BP; 143 A; 62 C; 90 G; 127 T; 1 other;
     tgttaggaat aatgtgagtt tcaaaatcat aacaattaat attatttttg ttgtgtcggt        60
     agtaggcaat ttctttacta aacaactgtc actaagcccc actctaggca gaggggaggt       120
     ataaaagtgg cgttagtgac agttgggaga acagtgttga agtgaaagcg gaacggcgca       180
     caccttaaaa agagagtacc tactggaacc gacatagaat taaagtaagc tacaaggaca       240
     ggtacgtgtg atgttctttc attaacagat agcccctttc cagtgaggcc acattattgt       300
     gtattaaggt taagattaat taagtttaat taccatctcc aaataatgta acaataatta       360
     ttaaacctga ttgtgatgtg tgkaaaataa atggttgaga atcaatttgc gagttttctt       420
     aca                                                                     423
//
ID   Gypsy-35_NVi-I repbase;    DNA;    INV; 5070 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposon from Nasonia vitripennis, interanl
DE   region, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5070
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1388-1388 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1680..4679
FT                 /product="Gypsy-35_NVi-I_2p"
FT                 /translation="NWVNHVANLDVFVGNIIDDCILGSDFLDATGITDLIT
FT                 KIILNTPSSIINKQISRIVDSSKVVPGSLQEIFDKNSENLDQDQRREFADL
FT                 LHEFEEIFQDDDVTGKCNLVEHRIQLLHNQPIKQPIRRPPIHQIKELDECI
FT                 AEMHSQGVIEESDSSYCSPVVPKKKKDGKIRFCINFQKINAITIKDSYPLP
FT                 RVDDTLDKLAGYSWFCTLDLKSGYWQIKIREEDRKITAFSIGKGLWQFKVM
FT                 PFGLCNAPATFQRLMEKLLRDYLSKFCLVYLDDVMVLGKSFNEMISNLKKV
FT                 FVRFQEAGLRLNKKKCVFFSRQVEYLGYIVSEKGKSADPKKIQSVVNWPIP
FT                 HNKKAVLSFVNFCGYYRRLIKGFADIAKPLYKLTEKSTKFLWSEDCQKAFS
FT                 KLKEVLTKPPILAFPSLSSEFILDTDASDHGIGSVLSQKQDGIERVIGYYS
FT                 RVLSKPERNYCVTRRELLAIIESLKHFHHYLIGKPFIIRTDHSSLTWLLSF
FT                 KELDGQLARWLGKLDQYDYKIIHRKGNLHGNADGLSRRPCEDFSCKYCSRV
FT                 EEKFNEETICRIIFEENTSEDWKKSQAEDEAISFICQTKELQKKPAWQEIS
FT                 SMDEFTKIYCSQWDSLVLINGILYREWVSTNLDHKIRQLVVPIDKIKDILE
FT                 EAHDSPSGGHFGVNKTLDKIRKRFYWATCKRDVENWCKSCEVCIAKKGPPD
FT                 KGHGEMKIYNSGVPFERLQMDILGPFPLSSLGNKYLLVVTDCFSKWVEAFP
FT                 LSNMRTKTIAEIFVDQIVCRYGVPLEVNTDQGTNFDSKLIKNLSELLGIKK
FT                 TRTSPLHPQSNGQVERQHQTLLHYLTKYIHDNQKDWDRWVSLFLLAYRSSK
FT                 HATTGATPAEMYTGFDLRLPLDLIRGCLPEEVEIKGDGDYVHRLRRKLSEI
FT                 HKMARDRINLQSEKTKSWYDKRALNVEYSQGQKVWFFNPRRTKGKAPKLQS
FT                 NWEGPWEVVRKINDVVYCIRRSPRHKSKIVNINRLGTYTERDTH*"
FT   CDS           join(314..1342,1346..1702)
FT                 /product="Gypsy-35_NVi-I_1p"
FT                 /translation="RDLEVRLSQRSVKEVNLSEELRRRDQDFLSEKRLREN
FT                 YEEKIKHLVEDIERLQRSNEALLAERSEWTRKQQDLERRLTELCRSNISNT
FT                 NINTNSAIATGTFDRLRSNNVHPLDNTQSTQSISLGYNLKPDTYDGTTPLR
FT                 EFLNQFQLIARANNWDSARIMVALAASLRGKARSVLDNYKDTATIYFDKLI
FT                 SSLELRFGDAHFAPTYYFQFQNRRQQRGEDFPTLAADLMRLAGLIYPDCPF
FT                 KTQDKIACAQFVIAIFDNSIRKILQLERINSLQIALARAMEVKVIEDQDKR
FT                 LQHLAQRNNYTSSSFPKSVSSSSQPSGRQNFQDFVKEIECWNCGKKGHFKV
FT                 LSDFVNTSGKLGYVKLSGASLTELDKTPTNSHSYRIDCHVGRINRNSNKFY
FT                 FDGLINDKACIFKVDSGSDVTIINPKFVESKDMRIPINFTTLKYPTGEKVP
FT                 VEFLISASLKLGESCS*"
XX
SQ   Sequence 5070 BP; 1668 A; 850 C; 1030 G; 1519 T; 3 other;
     ttttgggggc tcgtccggga tactagtgtt tttgagtgat tattttatgc atcttcgatc        60
     tggcaagatg cttccaagaa caccacacaa gccggatgca ccagcacaat ccatcgatga       120
     ttcacgagaa gaagtggatt tattgaatct tgaacagacg aatctggagg acacaaatgt       180
     tttcagacac acacaatctt cacaaacccc aatcctcaat acacacactg atgttccaaa       240
     tccaacactg gtggctgcta ttaaggaaat aaacaacttg aagatacaac tagaaaacga       300
     acatgctcaa tgaagagatt tggaagtccg tttatctcaa cgttctgtga aagaagtaaa       360
     cctttccgaa gagcttcgac gacgggatca ggattttctg tccgagaaac ggcttcgcga       420
     gaactatgag gagaaaataa agcacctggt tgaagacatc gagagactgc aacggtcaaa       480
     cgaggcatta ctcgcagaac ggtcagagtg gacaaggaaa caacaggatc tcgaacgtcg       540
     attaactgag ctatgtcgtt caaatatttc taacacaaac ataaacacaa attctgctat       600
     agctactggc acattcgata ggttaaggtc taacaatgta cacccactgg acaatacaca       660
     atcaacacaa agtattagtt tgggttataa tctcaaaccg gatacwtatg atggtacaac       720
     accactgcgt gagtttttga atcaatttca attaattgct agagcaaata attgggatag       780
     tgctaggata atggttgctt tagctgcttc tttacgggga aaagctagat ctgttcttga       840
     taactataaa gatactgcta caatatattt tgataagtta atatcaagtt tagaattacg       900
     ttttggtgat gcacattttg caccaackta ttatttccaa tttcagaaca ggcgtcaaca       960
     acggggtgaa gattttccaa cattagctgc tgatcttatg agattagctg gtttgattta      1020
     tcctgattgt ccttttaaaa ctcaagataa aatcgcctgt gctcaatttg taattgctat      1080
     tttcgacaat tcaattcgga aaattcttca attagaaaga attaattctc ttcaaattgc      1140
     tctggcaaga gctatggaag ttaaagttat cgaagatcag gacaagcgac ttcaacatct      1200
     agctcagaga aataattata cctcttcatc atttccaaag agtgttagtt cgtcatctca      1260
     gccgtcaggc agacagaatt ttcaagattt tgtaaaagaa atagagtgtt ggaattgtgg      1320
     taaaaaagga catttcaagg tctaattgtc cgactttgtc aacacatcag ggaaactagg      1380
     ttatgttaaa ctttctggag cgagtttaac tgaacttgac aagactccaa caaactccca      1440
     ctcttatcgg attgattgcc atgttggaag aattaatagg aactctaata aattttattt      1500
     tgatggttta attaatgaca aagcttgtat ttttaaagta gattctggtt ctgatgtgac      1560
     tattataaat ccaaaatttg ttgagtcaaa agatatgaga attcctatta attttacaac      1620
     acttaagtat ccaactggag aaaaggtacc agttgaattt ttgatttcag cgtcgttaaa      1680
     attgggtgaa tcatgtagct aatttagatg tttttgtcgg aaatattatt gatgattgta      1740
     tacttggaag tgattttctt gatgcaactg gtattacaga tttaattact aaaattattt      1800
     taaatactcc aagttcaatc attaataaac aaatttcaag aatagtcgat tctagtaagg      1860
     ttgtaccagg ctcattacaa gaaatttttg acaagaactc agagaacttg gatcaagatc      1920
     aacgtcggga gtttgcggat cttctacacg aatttgaaga aatttttcaa gatgatgacg      1980
     ttactggaaa atgtaatttg gttgaacaca gaattcaatt actccataat caaccaatta      2040
     aacaacctat tcgaagaccc cctattcatc aaattaagga attagatgaa tgtattgctg      2100
     agatgcattc tcaaggagtc attgaagaat cagatagttc gtattgctca cctgtagttc      2160
     ccaagaagaa gaaggatgga aaaattcgtt tttgtattaa cttccaaaaa attaatgcaa      2220
     ttacgattaa agattcgtac cctttaccaa gagttgatga tactcttgat aaacttgcag      2280
     gatattcgtg gttttgtaca ttggacttga agagtggata ctggcaaatc aagattcggg      2340
     aagaggatag gaaaatcacg gctttctcaa ttggaaaagg tttatggcaa tttaaggtta      2400
     tgccattcgg attatgcaat gcaccggcga cttttcaacg tttgatggaa aagttactca      2460
     gagattatct ctcaaaattc tgtttagttt atttagatga tgtcatggta ttaggaaagt      2520
     catttaatga gatgatatcc aatttaaaaa aggtatttgt tcgttttcaa gaagcaggtt      2580
     tacgtctaaa taagaagaaa tgtgttttct tcagcaggca agtcgaatat ttaggataca      2640
     ttgtttctga aaaaggaaaa tcagctgatc caaagaaaat tcaatctgtt gtaaattggc      2700
     caattcctca taacaaaaag gctgtgttga gttttgtgaa tttctgtggt tattataggc      2760
     gtctcattaa aggatttgct gatatagcaa aacctttgta taaattaact gaaaaatcga      2820
     ctaagttctt atggtcagaa gattgtcaaa aagccttttc aaaattaaaa gaggttctta      2880
     caaaacctcc aattttggca tttccttctc tttcttctga atttatttta gatactgatg      2940
     cttctgatca tggaattggg tcggttcttt ctcagaagca agatggaatc gaacgtgtca      3000
     taggttatta tagtagagtc ctttctaaac cggagagaaa ttattgcgtc actcgacgtg      3060
     aactcctcgc tattatagaa tcgttaaaac attttcatca ttaccttatc ggtaaacctt      3120
     tcatcattag gactgatcat tcctctttga cttggttatt atcgtttaaa gaactagatg      3180
     gacaattagc tcgttggtta gggaaattag atcagtatga ctacaaaatt attcacagga      3240
     aaggtaattt acatggaaat gctgatggac tttcaagacg cccttgtgaa gatttttcat      3300
     gtaaatattg ttccagagta gaagaaaaat tcaatgaaga gactatttgc cgtattattt      3360
     ttgaagaaaa tacatcggaa gattggaaga agagtcaagc agaagatgag gctatttctt      3420
     ttatttgtca aacgaaggaa ttacagaaaa aaccagcatg gcaagaaatt tcttcgatgg      3480
     atgaattcac taaaatctat tgttcacaat gggattcgtt agtgttaatt aatggaattt      3540
     tgtatagaga atgggtttca acaaatttag atcataaaat tcgtcaattg gttgttccta      3600
     tagataaaat caaagatatt ttagaagaag cacatgattc accatctgga ggacatttcg      3660
     gagtaaacaa aactttagat aaaattagaa aaagatttta ttgggctact tgcaaaagag      3720
     atgtagaaaa ttggtgtaaa tcctgtgaag tttgtattgc aaagaaaggt cctccagata      3780
     aaggccatgg tgagatgaag atttacaatt caggagttcc attcgaacga cttcaaatgg      3840
     atattttagg tccctttcca ctttcttctt taggcaataa atacctctta gttgtgacag      3900
     actgtttctc gaagtgggtt gaagcttttc ctctctctaa tatgagaaca aaaaccattg      3960
     ctgagatttt cgttgatcag attgtctgta ggtatggggt acctttagaa gtaaatactg      4020
     atcaaggrac aaatttcgat tcgaaattga ttaaaaattt gtctgagttg ttaggaatta      4080
     aaaagacaag aacatcacca ttacacccac aatcaaacgg acaagtagaa agacaacacc      4140
     aaacactact tcactatctc acaaaataca tacacgacaa tcagaaagac tgggatcgct      4200
     gggtttcact atttctgtta gcttacaggt cctccaaaca tgcgacgacc ggagctactc      4260
     cagctgagat gtacaccggt tttgatctga ggcttccttt ggacttaatt cgagggtgtc      4320
     taccagagga ggtcgagatt aaaggagacg gagactacgt acacaggctt cggaggaaac      4380
     tcagcgagat ccataaaatg gcacgagacc ggattaactt acaatcggaa aagacgaagt      4440
     cttggtacga caaacgagct ctcaacgttg aatattccca aggacaaaaa gtttggttct      4500
     tcaaccctcg aagaactaaa ggaaaagcac caaaactaca gtcgaattgg gaaggacctt      4560
     gggaggttgt gagaaaaatc aatgacgtcg tctattgtat tcgtcgttca ccaagacata      4620
     aatccaagat agtcaacatc aatcgtcttg ggacttacac tgagagagat acccattaat      4680
     gaagactgct ctgctcacgg ttcttttgag ctgtggtttt tcccgtgggc gtgaaggtaa      4740
     ataccggagc agggacttga ggtgaggttc cacggcatgt caacttcccc cctcttgtct      4800
     gaagaccgat ttcgaccgac cctatgatga ggaaataaga aggatgattg aagtagattg      4860
     ttcaagagac gggtccgtct tagtcctgtt aagtgatgat tggaatggcg tctgtaagca      4920
     ttgctcggta acttgatgcc taggatgggt caaggtagag gatgttggtg tcagttcctg      4980
     taagtcatca ttggattgta agaggatcaa cccgcttgaa ggatggatgg ttatgattgt      5040
     cgggacgaca atctgaaaag gagagggcaa                                       5070
//
ID   Gypsy-35_NVi-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-228
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1383-1383 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 228 BP; 61 A; 43 C; 52 G; 71 T; 1 other;
     tgttgtgacc gagcctgaac gttgcgcgat tcgaacacca agaatcgcgc atagcgaccc        60
     ttagcaacga gataaacgac gtcgcggatg ttattgttta tgtttagtct ggttctgtca       120
     gctgttgaga acagttgtgt ttacgatttg aataaagagt ccgagttcaa gagtgatttt       180
     ctataaataa cgtgttgtta tttttattac ccgaacccgr tcataaca                    228
//
ID   Gypsy-35_SiCu-I repbase;    DNA;    INV; 5294 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5294
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5057-5057 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           315..1394
FT                 /product="Gypsy-35_SiCu-I_1p"
FT                 /translation="MTDQLIADLTTALDTKTKALGTAIMANTKMLGDIKVE
FT                 LQKLCTEFATIKSSLGTSSSTSSSSSSTSSKTASTPPPGGSSTTPPPYYDS
FT                 GLPVPKYDPLAMSANGFLHEAEEYFLLKSVPNTHWHLLVGRMFQEDSDILS
FT                 WYRAKRSSVTDWTTFTAAFKSYEDCDNSQDMLISQLYHRRQTLSEPFETFA
FT                 WEMHAAYLKADPKATQALIVERILNACLPEFSSEIRQYAPASVEDVVKHAR
FT                 LIATNLNKLRRYEHKPLLRVRKTDPLPPSKPTNNNNNVHSFRKPFYNSSTI
FT                 ASTKSNENENREASKNHSGEEKKRVICAYCKIPNHHISECRKKAWVDKQAS
FT                 QSQHTSFDSKPQGNPFG"
FT   CDS           1373..4579
FT                 /product="Gypsy-35_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TAGKPIRLVTKKESLLLPALIIPKTTPQVKIQIDNAK
FT                 LHALLDTGASHCYISKCMASKLNLIISPTDKLVKLGDDHEVKPLGKCKLSF
FT                 KLVNIAFDFDFFVMENLPFQFILGTNFIIHSRIVIDLANGKFWLGNKSYKK
FT                 ISFINADVLCALQGLTNAQRQELDELFTNYPDIMSDKIGCTNDIQCQIKVD
FT                 GPPIASKAYPVSQHKKDIIKKHVQKMLELGIISPSESEWASPVTLQKQGND
FT                 YRFCIDYRKINKHTKADPFPIPRIEELISRLGSASFISKIDCRKGYWQIPM
FT                 HPDSIEKTAFICHEGKFQFNRMPFGLRTAPSVFQRFMNKVLGTARGKWAEV
FT                 YLDDVILFSSSWKEHLEHIKFILQRFRHFGLTMNVEKCMFGETTIKYLGFL
FT                 ITPEGVRTDPEKTEAIRNYPAPKNWKEVKKFLGAVGWYRHYIPAFADKAAP
FT                 LSRLLRSTVPFTWGNEEITSFEKLKLEVCESVVLHFPDFTKQFILRTDAAN
FT                 NGLGATLAQIDHNGHERPIAFASRTLTDTERVMHSTEKECLGIVWALKKFE
FT                 HYLDGVEFILETDNRALVWLNTMKDANSKFMRWSLKIQDFNPIIRHIAGSK
FT                 NLVADALSRATVGKPEDEEIKEVMYPPHNNVSLFSFTLLNSDLDLEKIKQA
FT                 QKNDDEVQALSTDLPHDLEYHDNILYKVTKSNSKLPYIPKVLRNELFHYFH
FT                 DNPASGHMGFRKTIHRILRRVYWIGMHDDIFSYIRSCETCQKVKNLSGKPH
FT                 GDLQSNKVHGPWDVLAIDLVGPLPTTKNRKTVILTVVDHFTKWVELFALTD
FT                 GKAHNVARILEREVFTRWGSPKRILSDNATNFRGKTFEHLCNTWGIKHKYT
FT                 STYHPQANLSERINRNIRAILSSYVQSKHNNWDEYLPYVCLSLRTAISDTT
FT                 GFSPSMLNMGREIKLPFDRKLEDDSDDFESRTQFQNELIHKLATIYTSARK
FT                 NIEKAQVEQKKHYNTRHRSFSIKVGQLVLLKTHYLSDKSKKFCKKFAYRWS
FT                 GPFRVVKMLSPVSFQLQSLNGNSDVGVHNAKNLKLYYDRPPSNPLSFSVDS
FT                 SSSQAVVDNSKK"
FT   CDS           4891..5292
FT                 /product="Gypsy-35_SiCu-I_3p"
FT                 /note="zinc finger."
FT                 /translation="MSENQGLDDIPHSRLLRRLIPGLHPSVSKLITTTPAT
FT                 LNELFVQFENITHLIPKDDDFWKDQYGHYEPPEVTITPKQDDPAITFNKGE
FT                 CYNCGTPGHFAWQCSLPRNKAVQPKRKRRGKKKKGLKTVSVSLRRG"
XX
SQ   Sequence 5294 BP; 1820 A; 1050 C; 949 G; 1475 T; 0 other;
     tatattggcg cccaactaaa aatcgaacct ttcaaatagt aaacgtaaaa tcaaagtaaa        60
     attcccgtga atggattgct atagtatcta gttaagaaaa taatagtact ttaaaaagcg       120
     tacctagaat attagtataa gaagcttaca aacaaacaat ctttcctttt aaacgttatc       180
     tctatttcgt cctttaaaac tttatctttc cgttatctct aaattagcat agagtagtta       240
     ccttacgctt tctgactagc tgagtcgtat gctttcattt atttttggcc tttacgcatc       300
     cacatcgtat caagatgaca gaccaactca ttgccgacct tacaacagca cttgatacaa       360
     aaacaaaagc attgggtact gcaataatgg ctaacaccaa aatgctcggt gacataaaag       420
     tagaacttca gaaactatgc acagaatttg caacgataaa atcatcgtta ggtactagta       480
     gcagtactag tagtagttcc tcatcaacaa gtagcaaaac ggcatcgact ccccctccag       540
     gcggctcttc cacaacacca ccaccatatt atgatagtgg gcttccagtc cccaaatacg       600
     atccattagc tatgtcagct aacggctttt tgcatgaagc agaagagtac ttcttactca       660
     agtcagttcc aaatactcat tggcatcttt tagtaggtcg catgtttcaa gaggatagtg       720
     acatactatc ttggtacaga gcaaaacgca gttcagttac agattggacc acattcacag       780
     ccgcattcaa atcatacgaa gattgcgata acagtcagga catgctaatc tcacaacttt       840
     accatcgccg acaaactctt agcgaacctt ttgagacatt cgcatgggaa atgcatgcag       900
     cttatttaaa agccgatccc aaggctactc aagctctcat tgtagaacgc atacttaacg       960
     cttgcttacc cgaattctcg tctgaaataa gacaatacgc acctgcatca gtagaagacg      1020
     tagtaaaaca cgctagactg atagcaacga atttgaataa attacgtagg tacgaacata      1080
     agccacttct ccgcgtacga aaaactgatc ccttaccacc atccaaacca acaaacaaca      1140
     acaacaatgt tcattcattc agaaagccat tttacaattc aagtaccatc gcctcaacaa      1200
     aaagcaatga aaatgaaaat agggaagcat caaaaaacca ttctggtgag gagaagaaac      1260
     gtgtaatttg tgcatattgc aagattccaa atcatcacat ctcagaatgt cgtaagaaag      1320
     cttgggttga caaacaagca tcacaatcac agcataccag ctttgactct aaaccgcagg      1380
     gaaacccatt cggctagtaa caaaaaagga gtcattgtta ctgccagctc ttataattcc      1440
     aaaaactact ccacaagtaa aaatacaaat agataacgcc aaactgcatg ctttattaga      1500
     tacaggcgca tctcattgtt acatttcaaa atgtatggct agtaaattaa acttaatcat      1560
     ttctcctaca gataagttag ttaagcttgg tgatgatcat gaggtaaagc ctctcggtaa      1620
     atgcaaattg tcttttaagc tagtaaacat agctttcgac ttcgatttct tcgttatgga      1680
     aaatttacct tttcagttta tattaggtac caatttcatt attcactctc gcattgttat      1740
     agatttagca aacggaaaat tttggttagg aaataaatca tataagaaaa tttcatttat      1800
     caacgcagat gtattgtgtg cattgcaagg gctcactaac gcacagcgtc aagaactcga      1860
     tgagttgttt acaaattatc cagatatcat gtcagacaaa ataggttgca caaatgatat      1920
     ccaatgtcaa attaaggtag atggacctcc aatcgcatca aaagcttatc cagtgtcaca      1980
     gcacaaaaaa gatattatca aaaagcatgt acagaaaatg ttagagttag gtatcatttc      2040
     accttcagaa agtgaatggg catcgccggt cacactacaa aaacagggaa atgattaccg      2100
     attttgcata gattatcgaa aaattaataa gcatacaaaa gcagacccat ttccaattcc      2160
     tagaatagag gaactcataa gtaggttagg gtcagcttca ttcattagca aaatagattg      2220
     tcgtaaaggt tactggcaaa taccaatgca tccagatagc atagaaaaaa ctgcatttat      2280
     ttgccatgaa ggaaagttcc aattcaatag aatgccattt ggcttacgca ctgcaccatc      2340
     agtttttcaa cgtttcatga ataaagtctt aggaacagct agagggaaat gggcagaagt      2400
     gtatcttgat gacgtcatac tgtttagttc atcatggaaa gaacatttag agcatatcaa      2460
     attcatttta caacgcttta gacattttgg tttgaccatg aatgtagaaa aatgcatgtt      2520
     tggtgaaact acaataaagt acttaggctt ccttattact cctgaaggtg ttcgtactga      2580
     tccagaaaag acagaagcca taagaaatta tcctgcacct aaaaactgga aagaagtgaa      2640
     aaagttctta ggcgcagtag gttggtacag gcattatatt ccggctttcg ctgacaaggc      2700
     agctccatta tctcgtttgt tacgttctac tgttccattt acgtggggaa acgaagaaat      2760
     aacttccttt gaaaaattaa aattagaagt atgtgaatct gtcgtattac attttccaga      2820
     tttcacaaag cagttcattt taaggacaga tgctgcaaat aatggtttag gtgcgactct      2880
     agcacagata gatcacaatg gtcatgaaag gccaatcgca tttgcatctc gcactttaac      2940
     tgacacagaa cgtgtaatgc actctacaga aaaagaatgc ttaggcattg tgtgggcact      3000
     caaaaaattc gagcattatt tagatggagt cgaattcata ttagaaactg acaatcgtgc      3060
     tttagtctgg ctcaacacaa tgaaagatgc aaacagtaaa ttcatgagat ggtctctcaa      3120
     aattcaggat ttcaatccaa taattaggca tatagcaggt agcaaaaatc tcgtagcaga      3180
     tgctttatct agagcaacgg taggtaaacc agaagatgag gaaataaagg aagtaatgta      3240
     ccctccacac aacaatgttt ctcttttctc ctttacgtta ctaaattctg atcttgactt      3300
     ggaaaaaata aaacaagcac aaaaaaacga tgacgaagta caagcgctct ctaccgatct      3360
     tccacatgat ttagaatatc atgacaacat tctgtacaag gtaacaaagt ctaatagtaa      3420
     attaccttac atacctaaag tcttaaggaa tgaactgttc cattattttc acgataatcc      3480
     agcatcaggt catatgggtt ttcgtaaaac tattcatcgt attttacgtc gtgtgtattg      3540
     gataggtatg catgatgata ttttttcata cattcgctca tgtgaaactt gtcagaaggt      3600
     aaaaaactta tcaggtaagc cacatggtga cttacaaagc aacaaagttc atggtccatg      3660
     ggatgtttta gcgatagatt tagtaggtcc tttaccaacg acaaagaata gaaaaactgt      3720
     catcttaaca gtagttgatc acttcactaa atgggtcgag ttatttgcat tgactgacgg      3780
     taaagcgcac aatgtcgcac gcatattaga aagagaagtc tttacacgtt ggggatctcc      3840
     gaaacgcata ttaagcgata atgcaactaa ctttcgagga aaaacattcg agcatttatg      3900
     taacacatgg ggcattaagc acaagtacac aagtacctat cacccccaag ctaacttatc      3960
     tgaacgcata aatcgcaata tccgtgctat tctcagttca tacgtacaaa gcaagcacaa      4020
     taattgggat gaatatttac catatgtctg cttatcttta cgcacagcaa taagcgatac      4080
     tacgggcttt tcaccaagta tgttaaacat ggggagagag ataaaacttc cttttgatag      4140
     aaaattggaa gatgatagtg atgattttga aagccgtact caattccaaa atgaactaat      4200
     tcataaacta gccacgatct atacaagtgc acgcaaaaat attgagaaag cgcaagttga      4260
     gcaaaagaaa cactataata cacgtcaccg ttcattctct attaaagttg gtcagctagt      4320
     attgctgaag acccactacc tttcagataa gagcaaaaag ttttgtaaaa aatttgcata      4380
     tcgttggtct ggtccgttca gagtagtaaa aatgttatct ccagtcagct ttcaacttca      4440
     atctttaaat ggcaatagtg atgtcggagt gcataacgcc aaaaacctca agctttacta      4500
     cgatagacca ccaagtaatc cactttcatt ttctgttgac tcaagtagca gtcaggctgt      4560
     cgtagacaat agtaagaaat aagcttttca gtcaatttca attaaatagc aatagcaata      4620
     gtaagcaatg gctagtaata gtaaaatcgt aatgacagat tttgtcaaga atcttttgaa      4680
     taattctggt aagataaata attaagtaat aatataatta agcattagtt atagttaagt      4740
     gttaagtata gttttttctt gcaatgattg ttatcaggtt tgataaatta gtaattataa      4800
     taatcatttt caccaggtgt gcctgttatt agttataagc agctccctgg cgaacatgta      4860
     caagcgtttg catggagagt gttgaactcc atgtccgaaa accaaggatt ggatgatatc      4920
     cctcactctc gtttgctgcg tcgtcttatt cccggcctac atccatctgt ctccaagctg      4980
     atcaccacca ctccagccac actgaacgag ctctttgtcc agttcgaaaa cattacccat      5040
     ctgattccaa aagatgatga cttctggaag gatcaatatg gccattacga accacccgaa      5100
     gtcaccatca caccgaaaca agatgatcca gctatcacct tcaacaaagg agagtgctac      5160
     aactgcggaa ctccaggaca ttttgcttgg cagtgctcat tacctcggaa caaggctgtt      5220
     cagcccaaac gtaagcgccg tggaaagaag aagaagggtt tgaagacggt aagcgtctct      5280
     ttgcgaaggg ggtc                                                        5294
//
ID   Gypsy-35_SiCu-LTR repbase;    DNA;    INV; 517 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-517
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5112-5112 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 517 BP; 154 A; 102 C; 91 G; 170 T; 0 other;
     tgtaaggaag gtccttacat gagtatgtag tatgtaatgt aatgtggaga gattccatgt        60
     tattgtgtat tccagtgtac ctagtttacg tcaagtgctc atcttattcc ttttgtattg       120
     tgaaatatga atacctatgc attgtgattt atgaattatt gatttcggcc gagactataa       180
     aagctcgggc cgaccaatgt acttaagctc agatcaactc tgaattttgt cctgtaaaga       240
     ctgactgagg cgacctcaga cagtccacca aaacgcactt tgtgactggt gcactcgaac       300
     catgagactg gagcgagttc atgctacgta attgtaatta tgtacataca tgccgtttat       360
     ttagtataat aagatgaact attaataatg ttcactacag caatccaagt cacctaacaa       420
     attcctttta ttatatatgg gcaatgtcgt attcaattct catccctcat gctctcttgc       480
     attaaactaa catcacatta acgcacatac ccttata                                517
//
ID   Gypsy-35_SiOr-I repbase;    DNA;    INV; 4056 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4056
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 369-369 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..3537
FT                 /product="Gypsy-35_SiOr-I_1p"
FT                 /translation="MESVFRIPEPLNFDGVLADNWRRFKQRFDLYSEATDL
FT                 PQKGNKKQVAIFLNLIGEEGLELFNSFSLTDAETEDLKKVVEKFEEYCSPR
FT                 KNIIFERYRFNSIIQNDGQSFDSFLTELRKAVKTTEYGEPEQMIRDRIVIG
FT                 VSNKLTQERLLRESDLTLETAIKICRAVEISKSQSKALQNEAFVSAVTTKD
FT                 KVKRSQSEKQIMCSYCGYNHDRGKCPAFGKKCTKCKGKNHFAAVCKKKEKD
FT                 TNKNRKKVNEVSRDVDLSESSEESEFYLSALVKSVSSVNQNSREMWCEDII
FT                 VENKKIQFKLDTGAEVNVLPIEYLEKIGKVRNLLKTNITLVSYGSSNFKIK
FT                 PRGEVILNCSINSKCSKLSFVVVEGKNQMPLLGLSGCTDLNLLKRIDKLDI
FT                 QFKSLNKVISLYPNVFSGLGEFPKKHKIVLEEGYVPHIQPARRVPQALHER
FT                 LKSKLAELEEQKVIKKVQNPTEWLNPLVIVEKKNGDLRLCLDPKFLNKYIK
FT                 REHFLIPTSEEIASKLSNKKFFSVLDMKDGYFQVKIDDESSEYCSFATPFG
FT                 RYKFCRLPFGISSAPEVFQRMNFEIFGGIEGVDIYFDDIIITGATEEEHDR
FT                 NFKLVLEKALKYNIKFNKKKIQFKQEQVKFMGQIFSEKGIQPDENYIKAIL
FT                 DMPNPQNKTDLLRLLGMAKYLGKFIPNLSKVTSVLRELTRKDRQWNWSKEH
FT                 DEAINALKTLMTKAPVLSFFDPSTPIEIENDASKDGLGSCMSQNNHPVGFA
FT                 SRSLSKTEIRYSQIEKELLAIVFSVQKFHYFIYGVRNVTIYSDHKPLEAIF
FT                 KKDLNSVPPRLQRMLFKIMPYDIKVVYKPGKFLYVADTLSRASLANVDTKL
FT                 EVDLSTVVHSIEKYLPXSNEKKSDFKKATLNDSDLQTIVKYLVDGWPENKK
FT                 VLSHCARNFFKIKDSLCVSDNLLFFNNKLVVPYSLRKEILLKLHEGHIGID
FT                 KTKHRAREIFYWPGMSQDIENFIKQCKICEKFCRRNCKETIIPYEIPSRPW
FT                 ERLGTDIFTYSNQSYLVIIDAYSNWLEVVPIKDKSTLEVISKFKLIFSTFG
FT                 CPDTLISDNIPFGSCLFKEFAKNWNFNIITRSANYPRSNGLAEKGVGIAKL
FT                 LLKKSIEEGKSMCEALLQYRNTPLKNN"
FT   CDS           3530..4027
FT                 /product="Gypsy-35_SiOr-I_2p"
FT                 /translation="KTINYSPSQLLMSRICKTKLPISAELLKPTLCTGVYN
FT                 KQKIRQVNNKNYFNKHTKDLKELSPGQNVVIFNPVKNYWEPGKIVKLDNKP
FT                 RCYKVLDKLGNIVSRNRVDIKESANDFSEDTFEDFTEQVVKQNSPPPCSSV
FT                 QSNPELPQNLPKTRSGRFIKKPLKLDL"
XX
SQ   Sequence 4056 BP; 1506 A; 547 C; 779 G; 1223 T; 1 other;
     tggtgtcaag tgtgaatcct gtgtattagt ctgggtatta agcaaagtga agaaaaaatg        60
     aattcttgct acgagtaagt tgtttttttg gatttgaaga tttccgcaag tgcgtcagcc       120
     atacaaaaca aaatggagtc agtctttagg attccagaac ctttgaattt tgatggtgta       180
     ttggcggata actggaggag attcaaacag agatttgatt tatattctga agcgacagac       240
     cttcctcaga aaggaaacaa gaaacaagtt gcgatatttt taaatctgat aggagaagaa       300
     ggtctggaac tctttaactc cttctcatta actgatgctg aaaccgaaga tttgaagaag       360
     gtcgttgaaa agtttgaaga atattgtagt cctagaaaaa atattatatt tgaaagatac       420
     agattcaatt ccattataca aaatgatggt caatcatttg attctttttt gactgagttg       480
     aggaaagcgg tcaaaacgac agaatatgga gagcccgaac aaatgattag ggataggatt       540
     gttattggag tgtcaaacaa acttacacaa gaaaggctac tgagagaatc tgatttgacg       600
     cttgaaacgg ctataaaaat ttgtagagct gttgagatca gcaaatcaca gagcaaagcc       660
     cttcaaaatg aagcatttgt aagtgcagta actactaaag ataaagtaaa aagaagccaa       720
     tcagaaaaac agattatgtg tagctattgt gggtacaatc atgatagagg caaatgtcca       780
     gcttttggga agaagtgtac caagtgcaag ggtaaaaatc actttgcagc agtgtgtaag       840
     aagaaagaaa aagacactaa caagaataga aaaaaagtca atgaagtctc aagagatgtg       900
     gacctgtcag aaagttcaga agagagtgag ttctatttaa gtgccttggt aaaaagtgtt       960
     agttcagtga accagaatag cagagagatg tggtgtgagg acatcattgt tgaaaataag      1020
     aagatacaat tcaagctcga cactggggct gaggtcaatg tattgccaat tgaatacctg      1080
     gagaagattg ggaaggtaag aaacctgtta aagactaata tcacgttagt atcttatggc      1140
     agttcaaatt ttaaaattaa gccgagaggt gaggttattt taaactgttc tataaatagt      1200
     aaatgttcaa aattgtcatt tgttgtagtt gagggcaaga atcaaatgcc actgttaggt      1260
     ttgtcagggt gtacagattt aaatcttttg aagagaattg ataaattaga cattcagttt      1320
     aaatcattaa acaaagttat ttcgttgtat cctaatgtat tttcggggct tggtgaattt      1380
     ccaaagaaac ataaaattgt tttagaggaa ggttatgttc cacatataca gccagcaaga      1440
     cgagttcctc aggctctgca tgagaggttg aaatccaaac tagcagaatt agaagagcag      1500
     aaagtcatta aaaaagtaca gaatccaaca gagtggctta atccattggt aatagttgag      1560
     aagaaaaatg gtgatctcag attgtgcctt gatccaaaat ttttgaataa atatataaag      1620
     cgtgagcatt ttttgatccc aacatcagaa gaaatagcta gcaaattatc aaacaaaaaa      1680
     ttcttttcgg tactggatat gaaagatggt tactttcaag tgaaaataga tgatgaatct      1740
     tcagagtact gtagttttgc tactccattt gggcgttata agttttgcag gttaccattc      1800
     ggtataagtt ctgcccctga agtattccaa agaatgaatt ttgaaatttt tggaggcatc      1860
     gagggagtag atatttattt tgatgacatt atcatcacag gtgcaactga agaagaacat      1920
     gatcgaaact ttaaacttgt tcttgagaag gctttgaaat acaacataaa gtttaacaaa      1980
     aagaaaattc aatttaaaca ggaacaggta aaatttatgg gccaaatttt ttcagaaaaa      2040
     ggaattcaac cggatgagaa ttatataaaa gctattctag atatgccaaa tccacaaaat      2100
     aaaacagatt tactgagatt acttggaatg gctaagtatc tgggcaaatt tatcccaaat      2160
     ttgtccaaag ttacgtcagt gttaagagaa ttaacaagaa aggatagaca atggaactgg      2220
     tctaaagaac atgatgaagc tataaacgct ttaaaaacgt taatgactaa agcacccgtg      2280
     ttatcatttt ttgatccatc tacaccaata gagattgaaa atgatgcatc gaaggatgga      2340
     ttaggatctt gtatgtctca gaacaatcat cctgtaggat ttgcttccag aagtctaagt      2400
     aaaacagaaa ttagatactc acaaattgaa aaagagctat tggcaattgt gtttagtgtc      2460
     caaaagtttc attattttat atatggtgta cgtaatgtca caatttactc tgatcataag      2520
     ccgcttgagg cgattttcaa aaaagattta aactctgtac cacctcgttt gcaaagaatg      2580
     ttatttaaaa ttatgcctta tgacataaaa gttgtttata agccaggtaa atttttatat      2640
     gttgctgata ccttatctag agcatcttta gctaatgtag atacaaaatt agaagtagat      2700
     ttatcaactg ttgtgcattc tatagaaaaa tatttaccaa wgtcaaatga aaaaaaatca      2760
     gattttaaaa aggctacgtt aaatgattcg gatttacaga caattgtaaa atatcttgtt      2820
     gatggttggc cagaaaataa aaaagtttta tcacactgtg cacgaaattt ctttaaaata      2880
     aaggattccc tttgtgtatc cgacaattta ttgtttttta ataataaact agtagttcct      2940
     tatagtttaa gaaaggagat actgttaaaa ttacatgaag gtcatattgg aatcgataaa      3000
     acaaaacata gagcacgtga aatcttttat tggccaggca tgagtcaaga tatagaaaat      3060
     tttattaagc agtgtaaaat ttgtgaaaaa ttttgtagaa gaaattgtaa agagacgatt      3120
     attccctatg aaatcccttc acgaccttgg gaaaggttag gtactgatat ttttacatat      3180
     tcaaatcaat catatttagt tataattgat gcctactcta attggctaga ggtagtccct      3240
     ataaaggata aatcaacttt agaagttata tctaaattta aactcatatt ttctactttt      3300
     gggtgccctg atactttaat cagtgataat ataccttttg gaagttgttt gtttaaggaa      3360
     tttgcaaaaa attggaattt taacattatt acacgtagcg caaattatcc aagatcaaat      3420
     ggattagcag aaaagggtgt aggcatagct aaattacttt taaaaaaatc tattgaggaa      3480
     ggaaaaagta tgtgtgaggc attattacaa tataggaaca ccccattaaa aaacaattaa      3540
     ttattccccg tctcaattat taatgtcacg tatttgtaag acgaaattac ctattagtgc      3600
     agaactcttg aaaccaacat tgtgcacagg tgtatataat aaacaaaaaa ttagacaagt      3660
     taataataaa aattatttta ataagcacac aaaagatctt aaagaattat cacctggaca      3720
     gaatgttgtg atatttaatc cagttaagaa ttattgggag ccaggaaaaa ttgtaaagtt      3780
     agataacaaa ccaagatgtt ataaagtatt agataagtta ggtaacattg tgagcaggaa      3840
     tagagtggac atcaaagaat cagctaatga ttttagtgaa gatactttcg aagatttcac      3900
     tgaacaagtt gtgaaacaaa atagtccacc accttgttca agtgtccagt ctaatcctga      3960
     actacctcaa aatctcccta aaactaggtc tggcagattt attaaaaaac cattaaaatt      4020
     agatttataa ttttaatatt ttgttaagag gggaga                                4056
//
ID   Gypsy-35_SiOr-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-176
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 403-403 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 176 BP; 48 A; 21 C; 37 G; 70 T; 0 other;
     tgtattatat attggtgaat gcgctggtat acatattgta atagaaggta ttgtgagttg        60
     cataacatcg tcttttagtt tagtgctgtt gctgttgtct ttggcatagt catgttgaga       120
     atataattat taacaaaacc ctttcgagag ttgttttatt gcagcctgat aataca           176
//
ID   Gypsy-35_SpEx-I repbase;    DNA;    INV; 3926 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3926
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4104-4104 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           30..863
FT                 /product="Gypsy-35_SpEx-I_1p"
FT                 /translation="MDDASPMKPQATLSKEDVEMISVKSRIPPFWRDKPRL
FT                 WFAQFETMVSNQKLSEEGKFGLAVAQLDKVDVEQISDIILSSARTGRFEAL
FT                 KTRLLSVYEESENKQLQKLLNEVELGDQRPSQLLRRMRDLARDKMPDETLR
FT                 MLWMSHLPSSTRAVLAVSEESKLDSLAAMADKMGEQTKEANSVCSCSHTSA
FT                 ATQSSTPSPDDRIINMIEALTKEVAALKMDRSRNYYRGPRRDRYRSRSRSK
FT                 STSRDSSICYFHRKFGKEAYRCRKPCNFNKKNTNQEN"
FT   CDS           833..3925
FT                 /product="Gypsy-35_SpEx-I_2p"
FT                 /translation="LQQEKHEPGKLVSTLAATGTEVNDITQHRLFIKELET
FT                 GLHFLIDTGANVSVLPVKRVHREKTTPAEYLYAANGSRIPSYGERTMTLNI
FT                 GLRRPYMCNFVVAKVTRPILGADFLHKHQLTVDIHGRRLIDKKTGLSVLGH
FT                 VTSASVSSINTVDDRQPFHDLLAKYPDITRPTLKLCHSEVEHHIQTTGSPL
FT                 YAKSRPLPPHKYKAAKAEFDAMIEQGICRPSKSPWASPMHLVLKKDGKYRV
FT                 CGDYRRLNAVTVPDRYPIPRLHDFTYNLLGKKYFSIIDLKKAYYQVRNREE
FT                 DIQKTAVITPFGLFEFPRMCFGLRNAGQTFQRHIDNVLRGLPVFPFVDDIL
FT                 IASETKEQHRRDLEDVFRRLNDHGLQLNVAKCTFAQQTLDFLGYTISSEGI
FT                 KPTDEKVEAIKSYPRPGTIQQLRRFLGMINFYRENIPHAAECQKELNVYLK
FT                 ESKKNDKTKITWSETAIQAFQKCKDDIANAVLLSYPSSTLPFVLMTDASDT
FT                 CAGAVLQQHIEGRWRPLGFFSKKFNDAQRKYSTYDRELTAIYMAVRHFRRT
FT                 IEGRDVTILTDHKPLTTALQANYKDETPRRTRYLDYISQFVTDIKHISGKD
FT                 NCVADAMSRVDTITCPTPINYDELAKSQEQDAELKQLMKSDRYQFKRIAPP
FT                 GSPTQVTCEMSTKSPRPFLPQQYRRQAYQAIHDLNHPGVRATRRLITSRFF
FT                 WLTMKKDVTDWARTCNQCQRVKVHRHTKAPVSSFTPVERLSHLHIDLVGPL
FT                 PTSNNCRYILTMIDRATKWPEAQPIEDMTAETVANKVYETWIARFGCPATI
FT                 TTDRGRQFESELFNKLMHRMGIQHIRTTAYHPQSNGLVERWHRTLKASLTA
FT                 RFNSNNWTYELPTVLLGLRAAYKADIGASTAELLFGRTLRLPGEFYGGATS
FT                 TCNTSSHFMNNLTEALRKAQVQRKANKSTAVFIHDDLLKTTHVYIRNDAVR
FT                 RPLTPTYSGPYRVINRADKYFTVQLENRTSNISIDRLKPAFQCNDEQADEA
FT                 PVTYSYVTKSGRTSKPPVRFAEGGI"
XX
SQ   Sequence 3926 BP; 1187 A; 1048 C; 875 G; 816 T; 0 other;
     gtggtgaccc cgacgtgatc gtgataatca tggacgacgc aagcccaatg aagccgcaag        60
     ctacgctttc caaagaggac gtcgagatga tctccgtcaa gtctcggatt ccacctttct       120
     ggcgagataa acccagatta tggttcgcac agttcgaaac catggtgtca aaccaaaaac       180
     tcagcgagga aggcaagttt ggactcgccg ttgctcaact cgacaaagtg gatgttgaac       240
     aaattagcga catcatactg tcatcggcta gaacgggaag gtttgaagcg ctgaagaccc       300
     gattattgtc cgtctacgag gagtcagaga ataagcaact acaaaaattg ctcaacgagg       360
     ttgaactagg cgatcaacgt ccctcccagc tgctgcggcg tatgcgtgat ttggcccgtg       420
     acaagatgcc cgacgaaact ctccgaatgc tgtggatgag ccacctacct tcttcgacga       480
     gagccgtatt ggcggtcagc gaagaatcta aactagattc gctagcagcg atggcagaca       540
     aaatgggtga gcaaacaaaa gaagccaact cagtgtgttc ctgcagtcac accagcgccg       600
     cgacacaatc gtcgacacca tcgccagacg atcgaatcat taatatgatc gaggcgctta       660
     ctaaggaagt cgctgcattg aagatggaca gatcgcgtaa ctactaccgt ggtccgcgcc       720
     gagacaggta ccgttcaaga tctcgttcca aatccacgtc tcgtgactca tcgatttgct       780
     atttccatcg caagttcggc aaggaggcgt atcgctgccg gaagccttgt aacttcaaca       840
     agaaaaacac gaaccaggaa aactagtctc gactttggca gcgacgggaa ccgaagtcaa       900
     cgatataacg caacaccgtc tgttcataaa agagttggaa accggtctac atttcctcat       960
     cgacaccggc gcgaacgtct cagtattacc cgtcaagagg gtacacagag aaaaaacgac      1020
     gccggccgaa tatctctatg ccgccaacgg ttcacgaata ccctcctatg gcgaacgcac      1080
     tatgacgttg aatattggat tacgtcgacc gtatatgtgc aatttcgtcg tcgccaaagt      1140
     gaccagaccg atattgggag ctgattttct tcacaaacat caactcacag tcgatattca      1200
     cggacgaaga ttaatcgaca agaagacagg cctttctgtt ctcggccacg tgacatccgc      1260
     ttcagtctcc agcatcaaca ccgtagatga tcggcagcca ttccacgacc tgctcgccaa      1320
     gtacccagac atcactcgac cgaccttgaa actttgtcac agcgaggtag aacaccacat      1380
     acagactacc ggctcgccat tatatgcgaa atcacgaccg ctgcctccgc acaagtacaa      1440
     ggcagctaag gccgagttcg acgcgatgat tgagcaaggt atttgtcgac cgtcgaagag      1500
     tccctgggcc agtccaatgc atctggttct caagaaggat ggcaagtaca gagtctgtgg      1560
     agattaccgt cgcctcaacg cagttaccgt tcccgaccga taccccattc caagactaca      1620
     tgattttacc tacaacctgc tggggaagaa atacttctca ataatcgacc tgaagaaggc      1680
     gtattatcag gtgagaaatc gcgaagagga tatacagaag actgccgtta tcacaccttt      1740
     cgggttattt gaattcccga ggatgtgttt cggtttgcgc aatgctgggc aaacgttcca      1800
     gcgacacatc gacaacgttc tccggggact tcctgttttc ccattcgtcg acgatattct      1860
     gatagcttct gaaaccaaag aacagcacag aagagatctc gaagatgtgt tcaggaggct      1920
     caacgatcac gggttacaac taaatgtagc caagtgtaca ttcgcccaac aaacacttga      1980
     ctttttgggc tacaccatat ccagtgaagg aatcaagcca accgacgaga aggtcgaagc      2040
     tatcaagtct tacccgcgcc caggaacgat acaacaacta cgtcgattcc tgggcatgat      2100
     caacttttat cgtgagaata ttccccatgc cgctgagtgt caaaaagaac ttaatgtcta      2160
     cttgaaagaa tcgaagaaaa acgacaagac gaaaattacg tggagcgaga cagcaatcca      2220
     ggcatttcaa aaatgcaaag acgacatcgc caacgccgta ttgttgtcat acccatcatc      2280
     aacactacct ttcgtgctta tgaccgatgc atccgacacc tgcgcgggag cggtacttca      2340
     acaacatatt gaaggccgtt ggagaccgct cgggttcttt tcgaagaagt tcaacgacgc      2400
     tcaaagaaag tacagcacgt atgacaggga actaacggct atatacatgg cagtacgtca      2460
     ctttcgccgg acgatagaag gccgtgacgt caccatattg acggatcaca aaccgcttac      2520
     cacagcgctg caagcaaact acaaagacga aactccgagg cgcacgagat acctagacta      2580
     catcagccag ttcgtcactg atatcaaaca catatcaggc aaggataact gtgttgccga      2640
     cgccatgtcc cgagtcgaca caatcacatg tcctacacct ataaattacg acgagttagc      2700
     aaagtctcag gaacaagatg cagaactcaa gcaactcatg aagagcgacc gttaccaatt      2760
     caagcgaata gcaccgcccg gctcacctac tcaagtcaca tgcgagatgt caacaaaaag      2820
     cccacgtccg ttcttaccac aacaatacag aaggcaagct tatcaagcga tacacgacct      2880
     taatcacccc ggtgtaagag ctactagaag attaattacc tcacgtttct tttggttgac      2940
     tatgaagaaa gacgtcaccg actgggcaag aacttgcaac caatgccagc gagtaaaagt      3000
     gcatcgccac accaaggcac cagtatccag cttcacgcca gtcgagcgct taagtcacct      3060
     acacattgac ttagtcggtc ccttaccaac gtcaaacaat tgtcgttata ttcttaccat      3120
     gatcgacaga gcaacgaaat ggccagaagc tcagccaatc gaagatatga cggcagaaac      3180
     agtcgcaaat aaagtatatg aaacatggat tgcaagattc gggtgccccg caaccataac      3240
     aacggaccgc ggcagacagt tcgaatccga actatttaat aagttgatgc atcgcatggg      3300
     aatccaacac attcggacta ctgcttacca cccgcaatca aacggtttgg tagaacgctg      3360
     gcaccgcacg ctcaaagcat ccctcaccgc aagatttaac tcgaacaact ggacgtacga      3420
     gttacccacc gtactactcg gtttacgcgc cgcatacaag gcagacatag gcgccagtac      3480
     tgcagaacta ttattcggaa gaaccctacg tctgcctgga gaattctacg gcggagcaac      3540
     ctcaacatgc aacacgtcat cgcacttcat gaacaacttg accgaagcat taaggaaggc      3600
     acaggtgcag cgcaaagcaa acaaaagcac agctgttttc attcacgacg atctgttaaa      3660
     gacaacacac gtatacatac gtaacgacgc cgtgcgcaga ccgttgacac ctacctatag      3720
     cggtccctat cgcgtcatca atcgcgcgga taagtacttc accgttcaat tggagaacag      3780
     aacatctaat atatccattg atcggctgaa gcctgcattc caatgcaacg atgagcaagc      3840
     agatgaagca cctgtcacct acagctacgt caccaagtct ggcaggacat ctaaaccacc      3900
     tgtacgcttc gctgaggggg gaataa                                           3926
//
ID   Gypsy-35_SpEx-LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-430
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4164-4164 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 430 BP; 95 A; 136 C; 103 G; 95 T; 1 other;
     tgtagtgacc tacactcgga gcattcaagc gcatcgcacg tccggccgcc gccagagcga        60
     gcagcgcact gagccatcag cggcggcgcg cccgcgatgc atgcggcacc tctgccggct       120
     tgcgactgcg ctagcgcacc gcttcgaaaa gcgacaacat acctgcgccg tagcccatgg       180
     aacactggcg atcgggagcg tgcgcacctg tatttacgtg ccgcgccgcg cgagccccag       240
     ctgagtttct cgaccggcgc taaccagcct cgcgcccatt ggtcgaatta watcggcatg       300
     tatgtctgcc ccgtcactac ccttatattc tataatctaa tattaggcaa tgctatttga       360
     caataaacat gttccaactg actagtcatt gtgaattatt attttcaacc gaactgcctt       420
     atcctctaaa                                                              430
//
ID   Gypsy-35_TrNi-I repbase;    DNA;    INV; 5895 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5895
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 238-238 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           828..5537
FT                 /product="Gypsy-35_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDDSNEKARGDGQGEETRGQGLRNSGGMISQGEGLTY
FT                 SHETVTSRGEGLARHGERQACSLAEIPEVTDNLNTLDWEVDVQRSRNEHEH
FT                 SSVIEDWNRRKKRHVSRPKGRGRRSSTSSDSAEESPPRKRKRSRRSDSSLM
FT                 EQFLSILDKVKCNNKPKMSFNTNVIPEFDPLLKNQNILTWITKVEQCAEIY
FT                 DWEEKEIIHYALPKLTGVAKAWYQGLTSILHTWSEWKRKLIESFPCREDYA
FT                 ELLTEMLSKRAKYGESLEQYYYAKMNLLNRCKIQGRQAVDCLLYGIEDRAV
FT                 KVGAQAAQFNGPEQVLKYFRTVKSGQNRESQDFSRKPYDRKISNIPNRPGS
FT                 SRPSTSTPNLNIKCFNCNELGHPSFKCDKPLVKCTSCERLGHQTSNCRNNY
FT                 KNVNESDKNKTQANDQKPKQVSEVSTEDTGINKYLXDIKVNGYMTSCHVDL
FT                 GSQCSLIKASVAKALNLQVIVRSDLPILRGIGASLIRPVGVAVTLVEVQGL
FT                 IETIDLYVVEDYVLVHPVLLGHSFTERPDILIIKTPDEVSFRRIPPNKINL
FT                 SASRDTEVPGNMLRAIQVTTNTQIDCDVYVSGALRGPEGKEYYILPGLYEV
FT                 KQGRGAILLYNVTSNPMTIGKGDLLTRSLERNIVSREKTLDSFSVSFNDSD
FT                 MENSVNFNPSLNVEQRNQLQDLLNKYGNCFSNGLHDLGYTSVAEMKIELND
FT                 ADPVVYRPYRMSHAERAQVRGMIQEMLDYDIIRESSSPYASPIVMVQKKTG
FT                 DKRLCIDYRALNRKTKKDHYPIPRVEDQLDLLAGNTLFTSLDLASGYYQIP
FT                 ICEESRHKTAFVTPDGQYEYNRMPFGLVNAPSVFQRTINKILMEAKIKYAI
FT                 VYMDDILIPSRDFIEGIKRLEEVLQLLRQGGLTLKLSKCHFFLDSIDFLGF
FT                 DVSANGIKPGIRKVEAVSKFPRPSNQHEVRQFLGLSGFFRRFIKGYAVITT
FT                 PLTDLLKKNMQWTWTDEHEQAFMKVKDLLVSRPILALYDPKSETELHTDAC
FT                 KEGLAGILLQRNERGILQPVSYFSRKTTIDERKMHSYELETLAVIASLSRF
FT                 RVYLVGISFKILTDCNALRSTLVKRDLIPRISRWWVQLQEYDCTIEYRPGT
FT                 KMTHADALSRNAVDNPVTEEHILDVLPIQQTDQDWISTVQSADEEVKKIKE
FT                 ILLDPSTVEAVDVHKNYKLKNDKVFRVVGDELKWVVPRGVRWQILKMNHDD
FT                 IGHYGFEKTLQRIKEHYWFQKMRRFVKKYVSSCLECAYHKTPGGKQEGELH
FT                 PIEKVSTPFHTIHADHLGPFVKSKRGNCYLLIIVDGFTKYVSINPVRNTKS
FT                 VTSVKVLRQHVSYFGAPVRLITDKGTSFTSKTFQDFVKSYGIKHIQNAVAT
FT                 PRANGQVERYNRTILDALSTSSHGNDKSWDEYVTDIQVGINTTKHKITQKS
FT                 PSELLFGFNIISRTDGKLNDIIHETLNKVPVEEMEEVRQDAGEKMKGQQLK
FT                 DSARYNRHRKISTQYKEGDLVRVARHVPHDGKSQKLTVKFQGPYRIIKLLP
FT                 NDRFMIEDTPLTRKNGRKYEAIVAIDKIQPWMNFNRDFESDSSQNDHSSEN
FT                 EQM"
XX
SQ   Sequence 5895 BP; 1973 A; 1044 C; 1217 G; 1656 T; 5 other;
     ggtcagaagt gggatcgaaa agaaaacttc acgttttctt gtcacgctca cggctcggaa        60
     aacactcttg ttgttcttat tatggtaata atgaccaatt gaggaaattc ttttacgtca       120
     ctattgtaag taacaggaat acatttaaat aatwctcgtt atagattacg aactattttt       180
     tttttttttg ccatttaaaa gtataaaata cgtatgggcc acgtaatgta attgttttaa       240
     attcgcttct ttatttttat actaccgtta tttkaaaata aggtgttgtc taatactatt       300
     atagtgacac aggagtttca aagtaacaaa twtcagttgt tacaatggta atgatattaa       360
     tgataatgca catattaaag acataataaa atatacataa aatatttatt atgtgatgat       420
     ttgtgtgatt taaaaggagt tttctataga atttatttgc ctgtactctt cttataagcc       480
     tagcgacttg gaaacgggca gttatggatc aacatctcac acgcatataa taataaataa       540
     taataataat ctacttgtat acttaattac tgttcttgtg aaatacatgt ttaatatact       600
     tacatattta ttatagttac ataattattt actttcattt tattacctaa taactgacaa       660
     tacaatccaa actgtaacaa cttgtgcgtg ttgttgatca ataamctaaa aatccctaaa       720
     gaactttacg aaataaagag gaagattgat cgtcgtgtac ctaaagtata ttaaatattc       780
     aacgaattgt actaaattta tatctgtaag ttccagatca cattgtgatg gatgattcta       840
     atgagaaagc ccgaggtgat gggcagggag aggaaacccg aggtcaaggg ttaaggaatt       900
     cgggaggtat gatcagtcaa ggggaagggc tgacatattc tcatgaaact gtgaccagtc       960
     gaggggaagg tctggcacgc catggagaaa ggcaggcatg ttctttggca gaaatacctg      1020
     aggtaactga taatttgaat actttggact gggaggtcga tgttcagcgc tcgaggaatg      1080
     agcacgaaca ttcaagtgta atcgaggatt ggaataggag gaaaaaaaga catgtatcac      1140
     gaccaaaggg gaggggtcgc cgtagctcaa catcatcaga ttcagcagaa gaatctccgc      1200
     cacggaagag aaaacggtca aggagatcgg atagtagttt aatggagcag tttctaagca      1260
     ttttagataa agttaaatgt aacaataaac ctaaaatgtc tttcaacacg aatgtaatac      1320
     cggagttcga ccctctatta aaaaatcaaa atatattgac ttggataacc aaagttgaac      1380
     aatgtgccga aatctatgac tgggaggaga aagagattat tcactatgcg cttcctaaat      1440
     taactggagt agccaaagca tggtatcagg gtctcacttc gattttgcat acgtggtcgg      1500
     agtggaaaag aaaacttatt gaatcttttc catgtagaga agattatgct gaactcttaa      1560
     ctgaaatgct tagcaaaaga gcaaaatatg gcgaatcttt agagcaatac tattatgcaa      1620
     aaatgaattt gttaaatagg tgtaaaattc aaggtagaca ggccgtcgat tgccttttgt      1680
     atggaataga ggatcgtgca gtaaaagtcg gtgctcaggc agctcaattc aatggaccag      1740
     aacaagtatt aaagtatttc agaactgtga aaagtgggca gaatagagag tctcaggatt      1800
     tttcgcgaaa accatatgat cgaaagatta gtaacatacc caatcgccct ggttcatcta      1860
     gaccaagtac gagcacacca aacttaaata taaagtgctt taattgtaat gagcttggac      1920
     atccaagttt taaatgcgat aaacctcttg tcaaatgcac aagctgtgag cgcctgggtc      1980
     accagacttc taactgcagg aataattata aaaatgtaaa cgaatctgac aaaaataaga      2040
     ctcaggctaa cgatcaaaag cctaaacagg tatctgaagt atccactgag gatactggta      2100
     tcaacaaata cttawtagat ataaaggtca atggatatat gacttcgtgc catgtcgatt      2160
     taggtagtca gtgctctctt attaaggcta gtgtagccaa ggccttaaat cttcaagtga      2220
     tcgtacgatc agacttacct attctcagag gtataggtgc tagcctcatt agacctgttg      2280
     gtgtagctgt gactttagtg gaagttcagg gcttgattga aactattgat ttgtatgttg      2340
     ttgaagatta tgttctagtg catcctgtcc tattaggcca ttctttcacg gaaaggcctg      2400
     atatcctcat aattaaaact ccagacgagg tcagttttcg gagaatacca ccaaataaaa      2460
     taaatttatc agcctcgagg gacacggaag ttcctggaaa catgcttcga gcaattcaag      2520
     tcactacgaa tacgcagatc gactgtgacg tctatgtgag tggtgcgtta agaggccccg      2580
     agggtaagga atactatata cttcctggac tatacgaagt gaagcagggt cgtggcgcaa      2640
     tcttgcttta taatgttaca tctaacccca tgaccattgg aaaaggcgat cttcttacgc      2700
     gttcgttaga aaggaacatt gtgtcaagag agaaaacttt agactcgttt agtgtgtcct      2760
     ttaatgactc tgacatggag aactccgtaa actttaaccc tagtttaaac gtcgagcaac      2820
     gcaaccaact tcaagatttg ctcaacaagt atggcaactg tttttctaac gggttgcatg      2880
     atttgggtta tacatcggtc gctgaaatga agatcgaatt gaacgatgcc gaccctgtag      2940
     tttatcgtcc gtatcgaatg tcacacgctg aaagagcaca ggtaaggggc atgattcaag      3000
     agatgcttga ctatgacata attcgggagt cgtcgtcacc ttatgccagt cccatagtta      3060
     tggtccagaa aaagacgggt gacaagcgtt tgtgcatcga ctatagagct cttaacagaa      3120
     aaacgaagaa agatcactat ccaataccta gagtagagga tcaattggat cttcttgcag      3180
     gcaatacctt gtttacgtca ttagatttag cctcaggcta ctatcaaatt cctatttgcg      3240
     aagagtctcg gcataagact gcgttcgtta cgcccgatgg ccaatatgaa tataatcgca      3300
     tgccttttgg cctagtgaac gcaccatctg ttttccaacg taccattaat aaaatactga      3360
     tggaagccaa gattaaatat gcgattgtgt acatggatga catacttatt ccatccagag      3420
     atttcatcga agggattaaa cggttagaag aggtactcca gttactcaga caaggtggat      3480
     taacattaaa actaagtaag tgtcacttct tcttagactc tatagacttt ctgggatttg      3540
     atgtgagcgc taatggtatt aaacccggaa tcagaaaagt cgaggcggtt tctaagtttc      3600
     caagaccttc aaatcagcat gaggtacggc aattccttgg tctctctgga ttttttaggc      3660
     gtttcattaa gggatatgct gtgattacca caccattaac agacctgctc aagaagaata      3720
     tgcaatggac ttggaccgat gaacacgagc aagcgtttat gaaagtaaag gatctacttg      3780
     tgagcaggcc aatactggct ctatacgacc ctaagtctga aacagaattg cataccgacg      3840
     cttgtaaaga aggcctggcc gggatactgc tacaacgcaa tgagagaggt atactacaac      3900
     ccgtatctta tttcagtcgt aaaactacca ttgatgaacg caagatgcac tcatacgagc      3960
     tcgaaacgtt agcagtaatt gcttcattaa gtcgttttag agtctatctc gtaggtattt      4020
     catttaaaat attaacagac tgcaatgcac tcagatcaac actagttaaa cgggacctca      4080
     taccacgtat ctctcgatgg tgggttcaac tccaagaata tgactgcact atagagtacc      4140
     gtcccggaac taaaatgaca cacgcggatg ccctcagcag aaatgccgtg gataacccag      4200
     taactgaaga acacattcta gacgtcttac cgatacagca aactgaccaa gattggattt      4260
     ctacggttca gtctgccgat gaagaagtta agaaaataaa agaaattcta ttagacccct      4320
     ctactgtgga agctgttgat gtacataaaa actataagtt gaagaatgat aaagtctttc      4380
     gtgtcgttgg agatgagcta aaatgggtag ttccacgtgg cgtccgatgg cagatcctta      4440
     aaatgaacca tgacgacatt ggtcattatg ggttcgagaa aactctacaa cgcatcaagg      4500
     agcattactg gtttcagaaa atgcggaggt ttgtaaaaaa atatgtttcg tcttgtttgg      4560
     agtgcgctta ccacaaaacg cctggaggta agcaagaggg cgaattacac cctatagaaa      4620
     aagtcagtac acccttccac actatccacg cagaccattt gggacctttc gtgaagagca      4680
     agagaggtaa ctgttaccta ctgataatag tagacggatt taccaaatat gtcagtataa      4740
     atccagttag aaacaccaag tccgtgactt cagtgaaggt actgaggcaa catgtgagtt      4800
     attttggagc tccagtacgt ctgattactg acaagggcac gagtttcacg agcaagacat      4860
     ttcaagattt tgttaaatcc tatggtatta agcatatcca aaatgccgtt gctacgccca      4920
     gggctaacgg acaggtcgag agatataata ggacgatctt agatgcttta tcaacctcta      4980
     gccatggaaa tgacaagtct tgggatgaat acgttacaga tatacaggtt ggtattaata      5040
     ccacaaaaca caaaataaca cagaagagcc catcagaact actatttggg tttaatataa      5100
     tcagtagaac agatggtaaa ttaaatgata tcatccacga gacactcaac aaggtcccgg      5160
     ttgaagaaat ggaagaggta cgacaagacg caggagagaa gatgaaagga caacagttga      5220
     aagattctgc taggtacaat aggcatagaa aaatttccac acaatataag gaaggcgacc      5280
     tagtacgggt agcaaggcat gtgcctcatg acggcaagtc gcagaaactt actgttaaat      5340
     tccaggggcc gtatcgtata ataaaattac ttccaaatga taggtttatg atcgaggata      5400
     cacctctaac tcgtaaaaat ggcagaaaat acgaagctat agttgccatc gacaaaattc      5460
     aaccatggat gaattttaac agagatttcg agtcagattc gtctcaaaat gatcattcta      5520
     gtgagaatga gcaaatgtga gtctaaacat actttataat gattatttcc cgaattctta      5580
     aaattacata taatcgtcgg ttaataagtg tgatcattgt gtgttaaatt cgaatagtta      5640
     taataaaaga attgtaattc atcagtgtaa tcatatatca cacatattat tgtgtaattg      5700
     tgcatgttat aaatcataaa ttcataagtt actactataa taatttgtca tattatgtat      5760
     gttataatta tcataaatta tcaaatcaga tcatttattc aaattaaaat tttgaattta      5820
     gatcatacaa gaaataaatt atatatctca ttcttaataa agcgaaggga ctcgcttaaa      5880
     acaggatggc cgagc                                                       5895
//
ID   Gypsy-35_TrNi-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-444
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 192-192 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 444 BP; 155 A; 51 C; 73 G; 165 T; 0 other;
     tgtaaggtac aagttgttta atatttaaaa ttaaagcagt caggaacaac cttttatttt        60
     tttaagttta ttatacatac cggaaattat attattttag tgttttaatg ttttattaaa       120
     tcctatttat tgttaaatta tattagctca atatattcaa tatttttacc atttctattt       180
     attaaataaa gtaaataaca attatttaac aataattgaa tgctaaactg gcgccagcgg       240
     aagttacatt ttgtcagttg tcaacttaaa atgggagagg gaaaattgaa tataacggat       300
     tgacgttagt ttagcaaggg ggagtggttg tcgcattttg gaacagataa gtactgtgaa       360
     gtgtaaagtg tggacaagtg ataaaatata cgtaaatttt accatcagca cgtgtattta       420
     ttccatctga cctaaaaccc ttta                                              444
//
ID   Gypsy-35_TrVa-I repbase;    DNA;    INV; 4862 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4862
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 280-280 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           257..4654
FT                 /product="Gypsy-35_TrVa-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDAAQFQQFLATFQNSMQQAFAAQTNAPAPVILNFES
FT                 FNRSSESFSQYRERFDNFALLKGISTNLCLLKQTFLNCVGSEIYELIKTTI
FT                 APKTIDETSYAEIVSSLETLLSPKPNVLLEQHRFLTRIQTESESISDYVTA
FT                 LRKFASNCKFECSCNKSVSNLFLRAQFIRGLRNSAIREKLLTEEIDDFPKL
FT                 VDKALLIESSYLSNKEIKNSNLESNGANINLISKSSRRFASSSNFNQNSRE
FT                 RSRPKSSSYRSVSRNRQHSRHNSSHRNQSRSRPKINLHELGISDLCTKCGH
FT                 NNHKRDECWSKPHTLKCQACNRTGHVSKVCITTLSRQKRNKVQNLSEDENL
FT                 YADFNSGVDDVLRLTSKVTVNLFSNYASHPDDDARKYFITVFINETPVKFE
FT                 VDSGCGYTLLPQSEYVKLNLPGKLEPCLKQFRTYDDGLVIPLGIKTVNVRY
FT                 NNKSINHTVYVVPSNFSALIGRAWIRGLQINLSELDNHHSTPIVSEEINFI
FT                 KPMSVDELTQKFPSIFEQRVGKIPNVKCTLQLREKAKPRYFKPRDIPIATR
FT                 DSIEKELNDLQRDGIITPIDKSDWGSPLVPVPKPDGKTRICIDYKETVNPQ
FT                 LCSNHYPIPKIDEILNKLRNSKYFCKLDLFKAYLHVEMDEPSKEIQTISTH
FT                 KGTFTFNRLGLGIKTAPSQFHHIIDKILRGLKGVDSYFDDIIVHGKTLQEC
FT                 QENLLACLKRLDENDLHLNVHKCLFFKTRIKYLGFIIENQKIIKDPAKTKA
FT                 IVEARQPKSALEVKQFLGIITYYSRFIPHVSSITHPIRQLLRNNVPFHWSA
FT                 KCQSAFLKLKSIIASDLVLTAFDPDLPVSLACDASPTGLGVVLSHIIDNVE
FT                 KPISFASRSLTPAEQHYSQIDREALAIVFGVDKFFMYLYGRKFTLFTDNKA
FT                 LTRIFHEHTKLPRMTASRLLRYAAYLSMFDYVVKHRGSEFHANADFLSRFS
FT                 LPDQMSTSTQPLLDRELAACQDICINQISTINVTSELIAKETTEDPETAGI
FT                 LSKLRQDCEHEDCLEYTLRGDIIFKGNRVFIPTKLRPFILKELHETHLGIT
FT                 KTKQLARKYCYWPKIDSDIEKLIRSCEACILAQKSPNKAPTHKWETPINNF
FT                 DRVHIDYAGPRQGSHFLIAVDAKSKWPEIKVQNSAPTTKSTIDLLEEIFTT
FT                 HGYPLFLVSDNAKIFSNPEFEQYCKDRGIFQQFIAPGHPSTNGLAERYVQI
FT                 LKSKLNKMENDPGSVKAKVKRILFQFRATPLVNNQSPAELYLQRKFRIRLD
FT                 AIRPVTPPPNPIQTHSIRSFAVDQRVLARVYSGNKPGWQRGTVKRKFGRLH
FT                 YFVHLDSGHRFKRHIDQLRSLQDNSAPPTHPNAINVKQEANLPKKQVTFAS
FT                 NPTSFEYSKCPLPLATDLPVHAAERPLPAISRLPSXSRASAPVEPSTTPPL
FT                 RRPLTSVHNPRXPTTPKRKYVQRNPRSLNAQFSDRATRTRKPPSYLEDYEV
FT                 N"
XX
SQ   Sequence 4862 BP; 1548 A; 1169 C; 797 G; 1345 T; 3 other;
     attggcgacg aggtaaatca ttaatcgcaa tgtatcgctc aaatttagct cgtaactcgt        60
     gattcttttt tcgtatcgtg tcggttccgt cggtttcacg gtctcgtaat ctcgttatca       120
     tgtcgctcaa cacgtgtatt gcgtcgtata ttcaactcgt gccttcatca tgatcattta       180
     tcctgttcgt ctgaaactca atttggctgc tgaacccttt caatcatcaa aatccggctg       240
     aagaaatcat ctcaacatgg atgctgcaca atttcaacaa tttctcgcca cattccagaa       300
     ctccatgcaa caagccttcg ctgctcaaac caacgcaccg gctccggtaa ttctcaactt       360
     cgagtcattc aaccgctcta gtgagtcttt ttctcaatat cgagaaagat ttgataattt       420
     tgcattgctt aagggtatca gtacaaattt gtgtcttctc aaacaaacct ttcttaactg       480
     tgtaggttcc gagatatatg agctaatcaa aaccacaatc gcaccgaaaa ccattgatga       540
     aacatcttac gctgaaatcg tttcttcact tgaaactttg ttaagcccta aacccaacgt       600
     actgttagag caacatagat tcctcactcg tatccaaact gaatctgaat caatcagcga       660
     ttatgtaacc gctttaagaa aatttgcatc taactgcaaa tttgaatgtt cttgcaataa       720
     atctgtctct aatttatttt taagagctca atttattaga ggtcttcgta actcagccat       780
     aagagagaaa ctcctaacgg aagaaattga tgattttccc aagctcgttg ataaggcctt       840
     gcttattgaa tcgtcatact taagtaacaa agaaatcaaa aattctaacc tcgaatctaa       900
     tggtgctaac attaacttaa tctctaaatc ttctcgtaga ttcgcttcat ctagcaactt       960
     taaccaaaat tctcgtgaac gctcaagacc taaatcttct tcctaccgca gtgtgtctcg      1020
     taatcgtcaa cattccagac ataattccag tcaccgcaac caaagccgat ctcgcccaaa      1080
     aattaatttg catgaacttg gcatctctga tctatgcacc aaatgtggac acaacaacca      1140
     caaaagggat gagtgctggt ccaagcctca tacgctgaag tgtcaagcat gtaatcgaac      1200
     gggtcacgtt tctaaggtat gcatcaccac cttgagccgc caaaagcgca ataaagtcca      1260
     aaaccttagc gaggatgaaa atttgtatgc tgattttaat tctggagttg atgatgttct      1320
     ccgactaaca agtaaggtca ccgtaaactt attttctaat tatgctagtc accctgatga      1380
     tgatgctcga aaatatttta taactgtttt tattaatgaa acccctgtaa agtttgaagt      1440
     ggattctggc tgcgggtaca ctctcttacc tcaatcagaa tatgtaaaac tcaacctacc      1500
     tggcaaactt gagccttgct tgaaacaatt tagaacttac gatgatggac ttgttattcc      1560
     gctaggcatc aaaactgtta acgttcgtta taataacaaa agcataaatc acaccgtata      1620
     cgtagtcccc tccaattttt ctgcccttat aggtagagct tggatcagag ggctacaaat      1680
     taatttgtct gaattagata atcatcattc aactcctata gtgtccgaag aaatcaattt      1740
     tattaaaccc atgtccgttg atgaactaac ccaaaaattt ccaagcattt ttgaacaacg      1800
     cgttggaaaa ataccaaacg tgaaatgcac tcttcaattg agagaaaaag cgaaaccaag      1860
     atacttcaaa cccagggaca ttcccattgc aacacgtgat tcaattgaaa aagaacttaa      1920
     tgatctacaa agagacggca tcatcacacc gatagataaa agtgattggg gctcacccct      1980
     cgttccagtc cccaaacctg atggaaaaac acgcatttgt atcgactata aagaaacagt      2040
     caacccccaa ctttgttcaa accattatcc gatcccaaaa atcgatgaaa tcttaaataa      2100
     acttagaaac tccaagtatt tttgcaagct agacctgttt aaggcctacc tccatgttga      2160
     aatggatgaa cccagcaaag aaatccaaac aatttctacc cataaaggga catttacatt      2220
     taacagactt ggcctaggta tcaaaactgc tcccagccaa ttccaccaca taattgataa      2280
     aattcttcga ggtcttaaag gggtcgatag ctatttcgat gatatcatag ttcatggaaa      2340
     aacactgcaa gaatgccaag aaaatctgct ggcttgttta aaacgtctcg acgaaaatga      2400
     tctgcatctt aacgtccaca aatgcctgtt ctttaaaact agaattaaat atttaggttt      2460
     cattattgaa aatcaaaaaa tcattaaaga cccagcgaag actaaagcaa tagtggaggc      2520
     acgccagcca aaatcagcgc tggaggtaaa acaattttta ggaattatta cctactattc      2580
     cagatttatc cctcatgtct cttccattac gcaccctatc agacaactgt taaggaacaa      2640
     cgtgccattt cattggagtg ccaaatgtca atcagcattt cttaaactca agtcgattat      2700
     tgccagtgat ctagtcctaa ctgcctttga tcccgatctt ccagtatccc ttgcgtgtga      2760
     tgccagccct accggcttag gtgtagtgct ctcgcacatt atcgataacg tagaaaaacc      2820
     aatctctttt gcctcaagat ccttaacgcc cgcagagcag cactatagcc aaattgatcg      2880
     cgaggcccta gccatagtgt ttggagtcga caaattcttc atgtacctat atggtcgaaa      2940
     attcaccctc ttcaccgaca acaaagcgct aacgagaatc ttccatgaac acacgaaact      3000
     acctcgaatg acagcatccc gcttacttcg ctacgccgct tacctctcga tgtttgatta      3060
     tgttgtaaaa caccgcggaa gtgaattcca tgccaacgct gatttcttgt ctcgcttctc      3120
     cctgccggac caaatgtcta cctcaactca accccttttg gatcgtgaac ttgctgcttg      3180
     ccaggacatt tgcatcaatc aaatttcaac aatcaatgtc accagtgaat taattgcaaa      3240
     agaaacaacc gaagacccgg aaacagcagg tattctctcc aaactccggc aagactgtga      3300
     acatgaagac tgccttgaat atactcttcg aggcgacatt attttcaaag gtaatcgtgt      3360
     ttttatcccc actaaactta gaccatttat cctcaaggaa ctgcatgaaa cacatttagg      3420
     cataacaaaa acgaagcaat tagcaagaaa atattgttat tggcctaaaa tcgattctga      3480
     tatcgaaaaa ttgatccgct cttgtgaagc ttgcatcttg gctcaaaaat ccccaaacaa      3540
     agcgcccact cataaatggg aaaccccaat aaataatttt gatagagtcc acatagacta      3600
     cgctggccct cggcaaggat ctcatttcct catagccgta gacgcaaaat ccaaatggcc      3660
     agaaattaaa gtgcaaaatt cagcgcctac cactaaaagc acaattgatt tacttgaaga      3720
     aattttcact acccatggtt accctctttt tcttgtctcg gacaacgcaa aaattttctc      3780
     caacccagaa tttgaacagt attgcaaaga tagaggcatt ttccaacaat ttattgcacc      3840
     tggacaccca tctactaatg gactggccga aaggtacgtc caaatcctca aatcaaaatt      3900
     aaataaaatg gaaaacgatc caggttctgt taaagctaaa gtaaaacgta tcttgtttca      3960
     attcagagca actcctctgg taaataacca aagtccagca gaactgtacc tgcagcgcaa      4020
     gttcagaatc cgactggatg caatccgacc agttacaccg cctccgaacc ctattcaaac      4080
     tcattcaatc cgctcctttg ctgttgatca acgagtgctt gcaagagttt attctggtaa      4140
     caaacctggt tggcaacgtg ggacggtcaa aaggaaattc ggacgccttc attactttgt      4200
     acacttggat tctggacatc gcttcaaacg ccatatagat caactccgtt ctcttcaaga      4260
     taattctgct ccgcccactc acccaaatgc aatcaacgtc aagcaagaag caaacctacc      4320
     aaaaaagcaa gtaacctttg caagcaatcc aacttctttt gaatattcca agtgcccttt      4380
     gccgctagca accgacttac cagtacacgc agccgaacga ccactacctg caattagcag      4440
     acttccatcg wcatcaagag ccagtgctcc agttgagcct tctactactc ctccactgag      4500
     gagaccatta acttctgtcc acaatccgcg tgakccaaca actcctaaaa gaaaatatgt      4560
     gcagcggaat cccagatcgc tcaacgctca attctcagac agagccacaa gaactcggaa      4620
     acctcctagt tacctagagg actatgaagt caattagtgt gtaagtttaa catttccttg      4680
     tttttttttt taagtgtggg agaacatatc ccataaaaca acatatccca twaaatctat      4740
     tctagtcaaa tcaatcatcc tttgtaaata attttcgagt cttgtcagtt catcaatcat      4800
     aattcaacta gtattttgtc aaagttcatt taactgcaaa agctccttta agtgtgggag      4860
     ac                                                                     4862
//
ID   Gypsy-35_TrVa-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-35_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 339-339 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 194 BP; 51 A; 42 C; 36 G; 65 T; 0 other;
     tgttgtatcc ccaaggttgg tagtcatgtt agacagtgga ctatagccgc tgtcaggttg        60
     ccgcccctag cgggcagatc tgtattatgt aataaaagga ataagtgcta atcatcgaac       120
     tcgtgttgta taattctctc gtataattca tccctttcta aatatctagt catctctctt       180
     ttaccatcat aaca                                                         194
//
ID   Gypsy-360B_AA-I repbase;    DNA;    INV; 6207 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.01, Created)
DT   22-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-360B_;
KW   Gypsy-360B_AA-I; Gypsy-360B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6207
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6207
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 176-176 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6207 BP; 2355 A; 1159 C; 1061 G; 1625 T; 7 other;
     tggcgaccgg acttagtcgg atttgcaatt ttcgaccagt agtgactagt gaaaagcacc        60
     gtgactagtg aaaagcaccg tgactaaaag aaaagcaccg tgactagcga aaagcaccgt       120
     gactagtgaa aagcaccgtg tctastgaaa atcaccggta aactgtgtta ataatcgttg       180
     ttaaaagtga gctggaatgg ggaatgaaaa cactacccct gcaccaccaa aagtgcacga       240
     agaagttatc aaaataacaa wcgcgaacgt gcagcaaact acacatctgg aaaaaacggc       300
     aaatgcaact ttaatgctag cctacatcgg gctaagcgta ctaataattt tggtagtata       360
     cgtagtctat cgtgttatta tcaacatgga acgaatgaag acacaagaag caatcaatcg       420
     tgcagcttca cttgcctccg tgttatcaaa caagtgaagt ggagacaata atgtgaagac       480
     aaccaagtta tgaatctact aactatcgtg atagtgctaa tagccgtggt ctgttggcta       540
     ttcttaatta tcaaggaaga gtcacaamag cggaagacaa taatgcagca agcaaaaaac       600
     gccgttcgat aaagaagaaa acgaagtgac taggaacgaa aagtctctcg cacmgtggga       660
     agctctccgg aacaaaaacc aaggaaccag acaaatgagc aggcgatacc aaccatmgat       720
     acctaaatga agagaccagg aacaccagac gaagaagtag agtaagtcca acataaccag       780
     tatcaatttt tgtatattat aaacagtaat gaatttatat gcattttaac aataatttta       840
     acccatttga atcatagcat cataaatatt tttcattgct atattaattt gataacctga       900
     taaccaaatg tttagtgaag agctaagcat tattgaaaaa aatataaaaa aggaattcag       960
     taacattagt aaaaatatta agagaccaag gtcaaaggaa aatatagcag aaaagaagga      1020
     aaatttaawa gatcttttga aacagtacaa gaccaagtta ttaatagtag aagcawccgt      1080
     ttcacacgaa gtatggaata cggaatgtga gaaatacgaa tcccttaaaa cagtgacact      1140
     agaagcactt aaattactga atgagtcgat cacaataaaa cccaagttta aaacattagc      1200
     tagagcagca atcatttcaa aaagattact aagtaaagag aaggaagtga aaatgccaac      1260
     tgtcgatatc aaattgggga cgaccctcgt acatatttac gatgggtctc cagacaatct      1320
     ccactctttt cttgacaccg ttgcattatt ttcggatact gtcaatgcag aatttgcaga      1380
     agcaacagcg gatcagaaaa cagcagccat tgaaacagtg tttaagttcg ttaaaacaag      1440
     gctgactgga gttgcacgtc agtcaataac tggtgcacga aatcttactg aaacattaga      1500
     caaactaaaa atccaatgtg ctccgaagat aagttcagac aacattaaag ctaaattggg      1560
     tgccttaaag aaaaagggat ccatggaaga attttgcaac caagttgaga aactaactca      1620
     acagctcgca gcgacctaca ttgacgaaac tatacctact gacaaagcaa tgcaaatggc      1680
     tactaaaagc ggtatcgaat ctctgattaa cggaatagac catacggatt cgaaactgat      1740
     tttaagagcc ggtacattca ctaagatcaa tgaagccatc caaaaacttc aggaaaacta      1800
     ttctgaagaa agacagaaat cctcgatagc acaaattttc tatacaaaca ataatcacaa      1860
     ccaacgtggt cgtggccgtg gtggattcaa cggtgacaga agaaattttt cttctggtca      1920
     cagatcattt tctcgtaatc atgatcaacc aagatttcaa aatttccaag gcaattataa      1980
     ccaaggacgc aattataacc aaggacacag ttatggccaa ggacaaaatt ttagaggtca      2040
     aaacttcaga ggacaaaatt ttagaggcca atggaataga ggaagaggac gatacgaaac      2100
     acgttctacc tatttcatgc agcctatacc gcaggcaata caacccgttt ttcaacaatt      2160
     gtcgccggta gcctaccaac aaccacaacc aattaaccag caaccagtgt atcaacaaca      2220
     acaacaacaa caacaaccag cacaaaacaa cactttttta ggcacacagt ttggtcgaca      2280
     tttacagtga atgcatcgac ctccaattac gttattttaa aagtagatct atcggaaacc      2340
     cagtgtactt ttattgttga cacgggttct gatatctcta tcattaaaag tcataaagta      2400
     aaatcgtctc aaatttacta tcctgaagaa aaatgcgtca tatcaggtat aggagaggaa      2460
     ggaattcact ctttaggaag tactttcgct aatatattag ttgaaggtat acctgttcgg      2520
     cagaaattcc aaatagtttc aactgatttt cctattccaa cggacggaat cattggaaaa      2580
     gatttcttgg cgagatataa gtgtaaaatt gactacgaac cgtggatgtt gtcatttacc      2640
     gtagacaatc agcttatttc gatacctatt gaagataatt tccaaaacaa tttctattta      2700
     cctccacgat gcgaagttac ccgttacata ccaaatcaaa atttacaaga ggatatggtg      2760
     gtacactcac aggaaattca acctggaatt ttttgtggga atacgatcat atcagctaaa      2820
     gaaccaatat taaaattcat caatactacc gataaagcag cttatgtcgc ttattccgat      2880
     tttaatcttt atatggaacc acttagagat tatcgaatag taccgcacaa aaagtaccaa      2940
     gtaaacaaat ctattagacg aaataaaatt ttgacaaatt tggatactca gcaccttact      3000
     ccacatgcta agcaagaact ggaaaaattg atcatccagt atgaagatat ttttaacttg      3060
     gaagatgaga aactaacaac caataatttt tatacgcagg acattaacct tacagataat      3120
     gtgcctgtgt acatacccaa ttataaaact atccatgccc aaggtgaaga aatcgaaagg      3180
     caagttcaaa aaatgttaaa tgatgaaatt atagaaccct ccgtttcatc atacaattcc      3240
     ccaattttac tcgtcccaaa aaaatcggac aattcagata aaaaatggcg tttagttgtt      3300
     gattttagac aattaaacaa gaaaattatg ccagacaaat ttcctctacc aaggattgaa      3360
     agtatattag accaacttgg tagagcaaaa tattttagca cgctggatct gatgtcaggt      3420
     tttcatcaaa tccccgtgaa cgatgagtcc aggaaatata ccgcattttc taccaactct      3480
     ggacactatc attttaaacg attaccattt ggattaaata ttagtccaaa tagttttcaa      3540
     aggatgatgg ctattgctat ggcaggttta acgcctgaac gtgcatttat ctatatagac      3600
     gatattgtta ttattggatg ctcattaaag catcatttat caaatttaga atcagtattt      3660
     gaacgtatga gaaaatataa tttaaaatta aacttatcca aatgtaaatt tctgagaacc      3720
     gaagtgacct atcttggtca taaagtaacc gataagggag tattgcccga tgactcaaaa      3780
     tttaaagcca ttagggatta cccaattccc aaaaacgtag acgatgtgcg tagattcgtt      3840
     gctttttgca actattaccg cagatttgtc gaaaattttg ctgacatagc ttacccatta      3900
     aaccaactac tgaagaaaaa cgttactttt aaatggaccg ataagtgtca aaatgcattt      3960
     gatcttttga gacaacatct gatgtctcct agattattac aataccccga ctttaccaaa      4020
     aaattcatat taacgacaga cgcttcagac atcggatgcg gagccgtctt gtctcaagtt      4080
     tcagaagtag gagaacgccc tattgcgttt gcaagtaaaa cgtttatccc agccgaaaga      4140
     aataaaccga ctatactgaa agaactgata gccatacatt gggctataca ttatttcgag      4200
     tcctacctat atgggaaacg atttacagta cgaacagatc acagacctct tgtgtatcta      4260
     ttcggaatga aaaaccccac atctaaatta acaagaattc gtatcgatct ggaaggattc      4320
     gattacgacg ttgtatatat taaaggcaag gaaaatgtgg cagccgacgc attatcgcga      4380
     atagctacca catctgacga attaagaaac tcaagtataa tgttagttaa tacaaggtct      4440
     atgacccgta atgcacaaaa acttattaaa attaatttaa agaatattaa cgaaaataaa      4500
     atcaaaaatg agaaaaagga gactgatcat ctctctgcat atgaaactga acgccctacg      4560
     gaaacaagaa aaatgatgaa gctgtgcaca gccgtagtgg acaatacatt gaaatttatg      4620
     atactaaaga aaaattgcaa aacgattgtt gcacaagtgc atcaagacgt tagaaatgga      4680
     agtcacgcat tcgagtgtgc tcttccagaa attgaaaaaa ttgcaaaaag aataagcgcg      4740
     aaaaatttag cattgccggc aaacgatttt atttttacca tggtaccaat aaatttattc      4800
     aaaactattg ctaataacat attgaaaact ttaaaagtta tcatttataa agaaccaacc      4860
     tttatagatg acccggaaga aattcaagca ttattaagta atcatcataa tacacccact      4920
     ggaggacacg taggtcaatt tagattgtac ttaagactcc gagaaaaata tagatggcgc      4980
     gatatgaaaa ggtctattgc ccaattcgtc caggcctgcg aattgtgcaa aagaaataag      5040
     attatcaagc acacaaagga accgatggtt ataactacaa caccgtctaa agcttttgaa      5100
     gtaatatcca ttgacacagt aggtcctcta ccaaagtcaa ataaaaacaa ccgttattgc      5160
     attacaattc aatgcgatct cacaaagtac ataaccataa tccctatccc aaacaaggaa      5220
     gcaaacacca tagctagagc attagtcgaa aattttattt tgactttcgg acattttctc      5280
     gaattacgtt ctgatcaggg tactgaatac aataatgaag tactcgagca gattagcaaa      5340
     ttactccaaa tcaaacaaac cttttcaaca ccatatcacc cacaatcaat tggttctttg      5400
     gagagaaatc acagatgcct caatgagtat ctgcgatcat tcaccaatga gcatcaatca      5460
     gattgggatg attggatcaa attttatgaa ttttcgtaca attcaacccc tcacacggat      5520
     catagtttca ccccatttga gttgatattt ggcagaaagg ctaaccttcc tcaagacgta      5580
     ttagaaaaca gtaacgaacc agtttataat ttcgaatctt ataaaaacga attgaaattt      5640
     aagttgagtc gatctcacga aatagtaaag caaaaactat tagaccataa atatcaaaga      5700
     aaacagcaat tcgataacaa cctcaatccc atttccgttg taattaatga catagtttac      5760
     ttaaaaaatg aaaacagaag caagttagat tctttttatc ttggacctta taaaatatta      5820
     aaaattgtag aaccaaattg tgaaatccaa catatactta caggtaaaac cacaaatgta      5880
     cacaaaaata gaataatcaa agcataaatt agtttctttt tccataactt taactagagc      5940
     cccaccgagc ctaacctcac ataaaaaaaa agagaaatta aaaaaaaaaa gtaacatgat      6000
     gaggtaggtg aaagttccca gctttatgct gaggagtgca aaattcggtt agtctagtaa      6060
     taaagttatt tataaaaaaa atagagctaa gaaatattaa caaaatcaaa ttcatgtaaa      6120
     actctgtaaa ggcatctggg accggcaatc aaataaatga ttccattaca ctttctttcc      6180
     attacatcat tttcaaaagg ggggagg                                          6207
//
ID   Gypsy-360_AA-I repbase;    DNA;    INV; 6172 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, A sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-360_;
KW   Gypsy-360_AA-I; Gypsy-360_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6172
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6172
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (15-JAN-2019).
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1251..2270
FT                 /product="Gypsy-360_AA-I_1p"
FT                 /translation="MPTVDIKLGTTLVHIYDGSPDNLHSFLDTVALFSDTV
FT                 NAEFAEATADQKSAAIETVFKFVKTRLTGVARQSITGARNLTETLDKLKIQ
FT                 CAPKISSDNIKAKLGALKKKGSMEEFCNQVEKLTQQLAATYIDETIPTDKA
FT                 MQMATKSGIESLINGIDHTDSKLILRAGTFTKINEAIQKLQENYSEERQKS
FT                 SIAQMFYTNNNHNQRGRGRGGFNGDRRNFSSGHRSFSRNHDQPRFQNFQGN
FT                 YNQGHNYNQGHSYGQGQNLRGQNFRGQWNRGRGRYETRSTYFMQPIPQAIQ
FT                 PGFQQLSPVAYQQPQPINQQPVYQQQQQQQQPAQNNTFLGTQFGRHLQ"
FT   CDS           join(2609..2689,2693..5887)
FT                 /product="Gypsy-360_AA-I_2p"
FT                 /translation="MLSFTVDNQLISIPIEDNFQNNFFLPPCEVTRYIPNQ
FT                 NLQEDMVVHSQEIQPGIFCGNTIISAKEPILKFINTTDKAAYVAYSDFNFY
FT                 MEPLRNYRIVPHKKYPVNKSIRRNKILTNLDTQHLTPHAKQELEKLIIQYE
FT                 DIFNLEDEKLTINNFYTQDINLTDNVPVYIPNYKTIHAQGEEIERQVQKML
FT                 NDEIIEPSVSSYNSPILLVPKKSNNSHKKWRLVVDFRQLNKKIMPDKFPLP
FT                 RIESILDQLGRAKYFSTLDLMSGFHQIPVNDESRKYTAFSTNSGHYHFKRL
FT                 PFGLNISPNSFQRMMAIAMAGLTPERAFIYIDDIVIIGCSLKHHLSNIESV
FT                 FERMRKYNLKLNLSKCKFLRTEVTYLGHKVTDKGVLPDDSKFKAIRDYPIP
FT                 KNVDDVRRFVAFCNYYRRFVENFADIAYPLNQLLKKNVTFKWTDKCQNAFD
FT                 LLRQHLMSPRLLQYPDFTKKFILTTDASDIGCGAVLSQVSEVGERPIVFAS
FT                 KTFIPAERNKPTILKELIAIHWAIHYFESYLYGKRFTVRTDHRPLVYLFGM
FT                 KNPTSKLTRIRIDLEGFDYDVVYIKGKENVAADALSRIATTSDELRNSSIM
FT                 LVNTRSMTRNAQKLIKINLKNINENKIKNEKKETDHLSAYETERPTETRKM
FT                 MKLCTAVVDNTLKYTILKKNCKTIVAQVHQDVRNGSHAFECALPEIERIAK
FT                 RISAKNLALPANDFIFTMVPINLFKTIANNILKTLKVIIYKEPTFIDDPEE
FT                 IQALLRNHHNTPTGGHVGQFRLYVRLREKYRWRDMKRSIAQFVQACELCKR
FT                 NKIIKHTKEPMVITTTPSKAFEVISIDTVGPLPKSNKNNRYCITIQCDLTK
FT                 YITIIPIPNKEANTIARALVENFILTFGHFLELRSDQGTEYNNEVLEQISK
FT                 LLQIKQTFSTPYHPQSIGSLERNHRCLNEYLRSFTNEHQSDWDDWIKFYEF
FT                 SYNSTPHTDHSFTPFELIFGRKANLPQDVLENSNEPVYNFESYKNELKFKL
FT                 SRSHEIVKQKLLDHKYQRKQQFDNNLNPISVVINDIVYLKNENRSKLDSFY
FT                 LGPYKILKIVEPNCEIQHILLGKTTNVHKNRIIKA"
XX
SQ   Sequence 6172 BP; 2347 A; 1152 C; 1052 G; 1621 T; 0 other;
     tggcgaccgg acttagtcgg atttgcaatt ttcgaccagt agtgactagt gaaaagcacc        60
     gtgactagtg aaaagcaccg tgactaaaag aaaagcaccg tgactagcga aaagcaccgt       120
     gactagtgaa aagcaccgtg tctactgaaa atcaccggta aactgtgtta ataatcgttg       180
     ttaaaagtga gctggaatgg ggaacgagaa cactacccct gcaccaccaa aagtgcacga       240
     agaagttatc aaaataacaa acgcgaacgt gcagcaaact acacatctag aaaaaacggc       300
     aaatgcaact ttaatgctag cctacatcgg gctaagcgta ctaataattt tggtagtata       360
     cgtagtctat cgtgttatta tcaacatgga acgaatgaag acacaagaag caatcaatcg       420
     tgcagcttca cttgcctccg tgttatcaaa caagtgaagt ggaaacaata atgtaaagac       480
     aaccaagtta tgaatttact aactatcgtg atagtgctaa tagccgtggt ctgttggcta       540
     ttcttaatta ttaaggaaga gtcacaacag tggaagacaa taatgcagca agcaaaaaac       600
     gccgttcgat aaagaagaaa acgaagtgac taggaacgaa aagtctctcg cacagtggga       660
     agctctccgg aacaaaaacc aaggaaccag acaaatgagc aggcgatacc aacatctata       720
     tctaaatgaa gagaccagga acaccagacg aagaagtaga gtaagtccaa cataaacagt       780
     atcaattttt gtatattata aacagtaatg aatttatatg cattttaaca ataattttaa       840
     cccatttgaa tcatagcatc ataaatattt ttcattgcta tattaatttg ataacctgat       900
     aaccaaatgt ttagtgaaga gctaagcatt attgaaaaaa tataaaaaag gaattcagta       960
     acattagtaa aaatattaag agaccaaggt caaaggaaaa tatagtagaa aagaaggaaa      1020
     atttaataga tcttttgaaa cagtacaaga ccaagttatt aatagtagaa gcaaccattt      1080
     cacacgaagt atggaatacg gaatgtgaga aatacgaatc ccttaaaaca gtgacactag      1140
     aagcacttaa attactgaat gagtcgatca caataaaacc caagtttaaa acattagcta      1200
     gagcagcaat catttcaaaa agattactaa gtaaagagaa ggaagtgaaa atgccaactg      1260
     tcgatatcaa attggggacg accctcgtac atatttacga tgggtctcca gacaatctcc      1320
     actcttttct tgacaccgtt gcattatttt cggatactgt caatgcagaa tttgcagaag      1380
     caacagcgga tcagaaatca gcagccattg aaacagtgtt taagttcgtt aaaacaaggc      1440
     tgactggagt tgcacgtcag tcaataactg gtgcacgaaa tcttactgaa acattagaca      1500
     aactaaaaat ccaatgtgct ccgaagataa gttcagacaa cattaaagct aaattgggtg      1560
     ccctaaagaa aaagggatcc atggaagaat tttgcaacca agttgagaaa ctaactcaac      1620
     agctagcagc gacctatatt gacgaaacta tacctactga caaagcaatg caaatggcta      1680
     ctaaaagcgg tatcgaatct ctgattaacg gaatagacca tacggattcg aaactgattt      1740
     taagagccgg tacattcact aagatcaatg aagccatcca aaaacttcag gaaaactatt      1800
     ctgaagaaag acagaaatcc tcgatagcac aaatgttcta tacaaacaat aatcacaacc      1860
     aacgtggtcg tggccgtggt ggattcaacg gtgacagaag aaatttttct tctggtcaca      1920
     gatcattttc tcgtaatcat gatcaaccaa gatttcaaaa tttccaaggc aattataacc      1980
     aaggacacaa ttataaccaa ggacacagtt atggccaagg acaaaattta agaggtcaaa      2040
     acttcagagg ccaatggaat agaggaagag gacgatacga aacacgttct acctatttca      2100
     tgcagcctat accgcaggca atacaacccg gttttcaaca attgtcgccg gtagcctacc      2160
     aacaaccaca accaattaac cagcaaccag tgtatcaaca acaacaacaa caacaacaac      2220
     cagcacaaaa caacactttt ttaggcacac agtttggtcg acatttacag tgaatgcatc      2280
     gacctccaat tacattattt taaaagtaga tctatcggaa acccagtgta cttttattgt      2340
     tgacacgggt tctgatatct ctatcattaa aagtcataaa gtaaaatcgt ctcaaattta      2400
     ctatcctgaa gaaaaatgcg tcatatcagg tataggagag gaaggaattc actctttagg      2460
     aagtactttc gctaatataa tagttgaggg tatacctgtt cggcagaaat tccaaatagt      2520
     ttcaactgat tttcctattc caacggacgg aatcattgga aaagatttct tggcgagata      2580
     taagtgtaaa attgactacg aaccgtggat gttgtcattt actgtagaca atcagcttat      2640
     ttcgatacct attgaagata atttccaaaa caatttcttt ttacctccat gatgcgaagt      2700
     tacccgttac ataccaaatc aaaatttaca agaggatatg gtggtacact cacaggaaat      2760
     tcaacctgga attttttgtg ggaatacgat catatcagct aaagaaccaa tattaaaatt      2820
     catcaatact accgataaag cagcttatgt cgcttattca gattttaatt tctatatgga      2880
     accacttaga aattatcgaa tagtaccgca caaaaagtac ccagtaaaca aatctattag      2940
     acgaaataaa attttgacaa atttggatac tcagcacctt actccacatg ctaagcaaga      3000
     actggaaaaa ttgatcatcc agtatgaaga tatttttaac ttggaagatg agaaactaac      3060
     aattaataat ttttatacgc aggacattaa ccttacagat aatgtgcctg tgtacatacc      3120
     caattataaa actatccatg cccaaggtga agaaatcgaa aggcaagttc aaaaaatgtt      3180
     aaatgatgaa attatagaac cctccgtttc atcatacaat tccccaattt tactcgtccc      3240
     aaaaaaatcg aacaattcac ataaaaaatg gcgtttagtt gttgatttca gacaattaaa      3300
     caagaaaatt atgccagaca aatttcctct accaaggatt gaaagtatat tagaccaact      3360
     tggtagagca aaatatttta gcacgctgga tctgatgtca ggttttcatc aaatccccgt      3420
     gaacgatgag tccaggaaat ataccgcatt ttctaccaac tctggacact atcattttaa      3480
     acgattacca tttggattaa atattagtcc aaatagtttt caaaggatga tggctattgc      3540
     tatggcaggt ttaacgcctg aacgtgcatt tatctatata gacgatattg ttattattgg      3600
     atgctcatta aagcatcatt tatcaaatat agaatcagta tttgaacgta tgagaaaata      3660
     taatttaaaa ttaaacttat ccaaatgtaa atttctgaga accgaagtga cctatcttgg      3720
     tcataaagta accgataagg gagtactgcc cgatgactca aaatttaaag ccattaggga      3780
     ttacccaatt cccaaaaacg tagacgatgt gcgtagattc gttgcttttt gcaactatta      3840
     ccgcagattt gtcgaaaatt ttgctgacat agcttaccca ttaaaccaac tactgaagaa      3900
     aaacgttact tttaaatgga ccgataagtg tcaaaatgca tttgatcttt tgagacaaca      3960
     tctgatgtct cctagattat tacaataccc cgactttacc aaaaaattca tattaacgac      4020
     agacgcttca gacatcggat gcggagccgt cttgtctcaa gtttcagaag taggagaacg      4080
     ccctattgtg tttgcaagta aaacgtttat cccagccgaa agaaataaac cgactatact      4140
     gaaagaactg atagccatac attgggctat acattatttc gagtcctacc tatatggcaa      4200
     acgatttaca gtacgaacag atcacagacc tcttgtgtat ctattcggaa tgaaaaaccc      4260
     cacatctaaa ttaacaagaa ttcgtatcga tctggaagga ttcgattacg acgttgtata      4320
     tattaaaggc aaggaaaatg tggcagccga cgcattatcg cgaatagcta ccacatctga      4380
     cgaattaaga aactcaagta taatgttagt taatacaagg tctatgaccc gtaatgcaca      4440
     aaaacttatt aaaattaatt taaagaatat taacgaaaat aaaatcaaaa atgagaaaaa      4500
     ggagactgat catctctctg catatgaaac tgaacgccct acggaaacaa gaaaaatgat      4560
     gaagctgtgc acagccgtag tggacaatac gttgaaatat acgatactaa agaaaaattg      4620
     caaaacgatt gttgcacaag tgcatcaaga cgttagaaat ggaagtcacg cattcgagtg      4680
     tgctcttcca gaaatcgaaa gaattgcaaa aagaataagc gcgaaaaatt tagcattgcc      4740
     ggcaaacgat tttattttta ccatggtacc aataaattta ttcaaaacta ttgctaataa      4800
     catattgaaa actttaaaag ttatcattta taaagaacca acctttatag atgacccgga      4860
     agaaattcaa gcattattaa gaaatcatca taatacaccc actggaggac acgtaggtca      4920
     atttagattg tatgtaagac tccgagaaaa atatagatgg cgcgatatga aaaggtctat      4980
     tgcccaattt gtccaggcct gcgaattgtg caaaagaaat aagattatca agcacacaaa      5040
     ggaaccgatg gttataacta caacaccgtc taaagctttt gaagtaatat ccattgacac      5100
     agtaggtcct ctaccaaagt caaataaaaa caaccgttat tgcattacaa ttcaatgcga      5160
     tctcacaaag tacataacca taatccctat cccaaacaag gaagcaaaca ccatagctag      5220
     agcattagtc gaaaatttta ttttgacttt cggacatttt ctcgaattac gttctgatca      5280
     gggtactgaa tacaataatg aagtactcga gcagattagc aaattactcc aaatcaaaca      5340
     aaccttttca acaccatatc acccacaatc aattggttct ttggagagaa atcacagatg      5400
     cctcaatgaa tatctgcgat cattcaccaa tgagcatcaa tcagattggg atgattggat      5460
     caaattttat gaattttcgt acaattcaac ccctcacacg gatcatagtt tcaccccatt      5520
     tgagttgata tttggcagaa aggctaacct ccctcaagac gtattagaaa acagtaacga      5580
     accagtttat aatttcgaat cttataaaaa cgaattgaaa tttaagttga gtcgatctca      5640
     cgaaatagta aagcaaaaac tattagacca taaatatcaa agaaaacagc aattcgataa      5700
     caacctcaat cccatttctg ttgtaattaa tgacatagtt tacttaaaaa atgaaaacag      5760
     aagcaagtta gattcatttt atcttggacc ttataaaata ctaaaaattg tagaaccaaa      5820
     ttgtgaaatc caacatatac ttttaggtaa aaccacaaat gtacacaaaa atagaataat      5880
     caaagcataa attagtttct ttttccataa ctttaactag agccccaccg agcctaacct      5940
     cttataaaaa aaagagaaat taaaaaaaaa agtaacatga tgaggtaggt gaaagttccc      6000
     agctttatgc tgaggagtgc aaaattcggt tagtctagta ataaagtaga gctaagaaat      6060
     attaacaaaa tcaaattcat gtaaaactct gtaaaggcat ctggtaccgg caatcaaata      6120
     aatgattcca ttacactttc tttccattac atcattttca aaagggggga gg              6172
//
ID   Gypsy-360_AA-LTR repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-360_;
KW   Gypsy-360_AA-I; Gypsy-360_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-523
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-523
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 219-219 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 523 BP; 148 A; 128 C; 109 G; 138 T; 0 other;
     tgtgctatac acatatcgac ccaaacacat atttcccttg tcaatcagcg caagcaataa        60
     aatgcatatt atgtaggtca ggtccgcgta agtgcgaacg atggcctcgg tgcaacatgc       120
     gtaagcagtt tgcatcgagg cactcgagtg cgccacatgt tttgctgatt gtactttaac       180
     cacgctggtg gtcgtccgtt tggacgatgc gctaaggctc aggtttcaac ccaaaaatgc       240
     tatcgccgaa atattgtcac cgccgtccca ggcgtctcca tctatctctt tctgacattg       300
     taaccaaatt gtaaccgatc aattgtaaag gcaaataaaa ggaacccatg tgaaaggaac       360
     aaggcagtct tgttctgact ccaatactat gcgtttcaat gtactctgta cataccgaaa       420
     catcctttag caccctggtc tccgggtact gctactccca agggtagtaa ttagaagtca       480
     agaactaatg tcaaagaact tagtctccgg acagactatg tta                         523
//
ID   Gypsy-361_AA-I repbase;    DNA;    INV; 7360 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-361_;
KW   Gypsy-361_AA-I; Gypsy-361_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7360
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7360
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 185-185 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7360 BP; 2000 A; 1655 C; 1722 G; 1983 T; 0 other;
     attggcgccc aacgtaaatt tcgcgagaaa atctgcgatt ttctccactg agcgaggggt        60
     acttccacca aaatttggat tttgggtgga atgacacagt ggtgggacgt ttttccacaa       120
     tcgcgtggtc gtttaattga ttttaaattg ttcgttttta aactaaatcg gtgaaccgtc       180
     tcgtctgcgg aacgaattgg gacattttgg gtctctttgt tctcagggcg ggatttttga       240
     ttcttctggg ctgatttggg gtgacatctg acttaatttg gcaacctaaa atcattttgg       300
     aaccgttagt aatcataaat tattatttac cgtatttgta cgtcactgat cagttggtaa       360
     gtctcaattt cgtccatatt ttgaagactt ttgtagttca ttcatcaaaa tggcactcca       420
     tactttgacg ttgggggagt tcaacgtcgc ctattttcaa ttgcgtgccg atcatttaga       480
     actcgatgag atcgactttg aactgaactc ccgtggtgtt attatccctc ctgaatcgga       540
     tcaatcgggt tcgaagaggc gtcgtcgatt gcggggattt ttgtccatgg agcagagcag       600
     ctccgaacct gtcgtccgtt cgtttcaagg gaatgtagaa actgaattgt ccatttgtag       660
     tggtaaattt gagtccatga aggaggattt ggggtatagg tgtccgaaca aggaagttta       720
     ccggagcagg ctacttcact tgggtgcccg gctccaaata gttaaaaact acgtcgcagg       780
     ggagaataat aaggccttcg tagatctttt gagcgatgtg gttgctcttc acaactacca       840
     cttcgcgaat gtgtcggcgc cgcccctaac gccgattgag gaagataagg aagatggtgg       900
     tgatgatttg caaatccaca ttgccacggg gacggatgct gtgtcggacg agaactctca       960
     aattccagcc gaaaaagtat ccaacagcca tgccgtaggt gatattcgag atgtcttgtt      1020
     tgaaataagg gcggagatcc aaaagacaca agcccaaatt aagctaagcg aggctcgcag      1080
     ttcttctaga gttgattccc tggaagctgc agtgaaaaag ctcggtaacg gacttgtgtc      1140
     tatcagcacg attgcttctg aacttcagaa aacgaatcgg gatgtgcaaa cacttcgcgt      1200
     agcggtttca gagttacagg gcatcgtgaa tagcatagtc cctaacgtaa actcccaaag      1260
     tttgccagta gaactggatg agattcgttt gagaacaagt ccagatctac cggatttgcc      1320
     cgatttcgat ccggcgacgt tagaaggctt aggcgttcca gagaactctt cgaggcgttt      1380
     ctcaatacct actaaagagt ttggaatacc aaaacagtca aatcagaaac ctttcagctc      1440
     cgcctttgtt aacaattcca gaacttttga gaagcccgag ccgactcatc cgccgcaaaa      1500
     tgtgttttcg cgtccttctt ttccaaatca cgtaccttct cgtcagcctg agagtacaga      1560
     ctcggtggag atcaccggtt actatcggcg gccccaacga gtggccgatt ggaaaatcca      1620
     aaaatatgct gggaacgatg aaggaaccgg actcaatgag ttcctggaat cggttcacca      1680
     ttatgcggag tcggaacaaa tctctgaagt ggagttattc aattcagcca tgcacttgtt      1740
     taccggtaat gcgctagctt ggtaccaagc tatgcggtct caaaagcggt tttataattg      1800
     gaaccatctt gtgtgcgagt tgaaggcgaa ctttgttcac ccggaactcg acgccgcgct      1860
     gaggatgaag gcatctcagc gacgtcagca gcggaacgaa tcattccaag atttctatct      1920
     cgaaatggaa aaaatcttcc gtgctatgac aacgccgcta agtcctagcg agaagctgga      1980
     cataataaaa cgtaacatga gagccgacta caaacaggtt ctaatcttca aaccggtgaa      2040
     cacagtggct gaattattgc tcatcggtaa gacaatcgac gcttccagga ctcccatcta      2100
     tcagaaagtt tttgggaatt caagagaagt cgctgcgttc ctggaaaacc ctgcctataa      2160
     tggctctaaa cagagccagt ggccgcagca agagagcttc aacggaaagg ggaacaagcc      2220
     tcgggttttc tacaataaga ataacccacc ggcctcacca ccggctaata aaacacctcc      2280
     aaaccgtttc cagggtacgg ggggtctaaa ccaaaagaat ctccaagaga agaccggagc      2340
     aattccgaaa aatacacggg aacaggaagg cgcaatgagc ttgagcttgt tagtggacaa      2400
     acatcgtcct cctcagcccg gggtatgtta caattgcgga gtaaaggggc atgatcacga      2460
     tgagtgctcc aagcccaagc gcgtctactg tatactgtgt ggcttcaaag gattcgagac      2520
     ttctcagtgc ccctactgct taaaaaacgg gatcagatcc aattaaagtc gcagttggaa      2580
     gctaaaaagc gctccctcga acacctagtc attcctccag agatttacga tagttttcga      2640
     ccagctcaat cagaagacta cagcgatcgc atatccgttc aaacgattat cttcaacaac      2700
     ccttcagaca atcgaccttt cattttggtc gatgtctacg gttgcgagtt cgccgcttta      2760
     ctcgatagtg gtagtaacgt cacaatcatg agcgaacggc attttcggaa aatgtcactc      2820
     tgtcctttga agaacatgga ccaaccgtgc gagttgcgct cggctaatgg tcaactcatt      2880
     ccagttctag gtcagtgcta tctccctttc acttttaagg gcattacaaa gatcgtttgt      2940
     acattaatag tcgaagaact gagtgtggaa tgtcttttgg gtatagattt ctggaagtct      3000
     tttggaatca ctccggaatt aaaagactgt gctttggtga gtcccggtcg tgtccagagt      3060
     gctgcgggag aagataccgc caagtcgaca ctgtcggcgt cccaggccac acggattgag      3120
     caagtcaaga atttgtttca aggtgttgag cctggtaagt taagcactac gactctcacc      3180
     gagcacagga ttttgataaa ggaggaattt cgagacaaag acccagtaat acgatatcct      3240
     tataagatga gtccgaataa actctcaaaa gtctgggcag aggtcgacag atggcgttcg      3300
     atgggtatta tcgaagagtc ggattcgaat tggtctctaa atctagtcgc cgtcacgaaa      3360
     ccagatgact cgattcggct ttgcttagac gccaggcccc tcaatgagag aacggtacga      3420
     gatgcttatc cactaccaca tcccggccgc atactaggta gcttaccgaa ggcaaagtac      3480
     ctatcgacca ttgacctaaa ggaagctttc ctgcaggttc ctctggccaa agacagccgg      3540
     aagtataccg cttttagtgt acctggtcgt ggaatgtttc acttcactcg ccttccgttt      3600
     ggactcgtta acagccctgc tactcttgct cggttgatgg accaagtcct tggtcgtggc      3660
     aagctcgagc cctatgtatt cgtctacctg gatgacatca tcatcgttag cgaatcattc      3720
     gaacatcacg tgcagttact cgaagaggtg gccgcatgtc taagaaaagc gaatttgaca      3780
     ataaacttag aaaaatcccg ttttggtgta ctccagctaa agtttcttgg gtattttctt      3840
     tctcgggagg gattgcaagt caaccccgag aaaatacaac ctattctcga ctatgagaga      3900
     ccgatcacaa tcaccaaatt gcgccggttt ttgggtatgt gcggttacta ccgccgattc      3960
     atagatcgct tcagcgaggt gacagcaccc ctgtccgatc tactaaaaac aaaatccaag      4020
     aacattagct ggaacccaga agcagaaaaa gccttccttg aaatcaagga gcggttggtc      4080
     actcctccag ttttagttcc accggatttc tcgaaagagt tcatcctcca gacggacgct      4140
     agcgacacag cagttgcagc cgtgctcgca caaaagcacc aggacgggga aaaagtagta      4200
     gcgtatttct cacataagct gactactccc cagcgcaatt accatgccac cgagaaggaa      4260
     ggtctggcag tagtattggc ggtggaaaac ttccgagggt acttagaagg ttaccatttt      4320
     cgattaatca cagacaattc tgcgattact tggatcatgc aaacgaagtg gaaaactgga      4380
     tcacgtctga gtcgttggag tttagaactt caactgtacg acatgacaat cgagcatcga      4440
     aaaggcaaag acaacatcgt cccggatgca ttgtcccgtg ccgtagccga agtctccgca      4500
     gtcaccaagt cggattggta ctgcaatctc cgatccaagg taatcgaaaa tccagatgcg      4560
     tattgtgatt tcaaagtcga agatgatcaa ctttttaaat acgtgaaagc cgaggaaact      4620
     cccagtgact cacgattcaa ttggaaactt gttccagcac cagagtgccg ccttgaaatc      4680
     attgagaaaa ctcatgaaaa ccttctccat gtcgggttag agaaaactct acatgagatc      4740
     aagcttcgat atttctggcc gaaaatggcc actcaaacaa gggcctttct tcaaaagtgt      4800
     ggaacgtgca aggaaataaa agctccgttc gttcccgttc aacctgaact tggtcaggct      4860
     cgaacatcaa attcaccctg gaggatgatt tcggtggact atattggccc acttcccaga      4920
     agcaaacacg gataccaaca tttactcgta gtactagatg tgtacagcaa gtacgtgatg      4980
     ctggtccccg tgcggaaaat ttcaagtaac tccctttgca caattcttcg ggagcagtgg      5040
     tttaaccgcc acggaagtcc ggagattctc ctgagcgaca acgctgccac gttcacctcg      5100
     aaggaattcg gccagttcct aaaagaaaac aaagttaaac actggctaaa cgcgaaatac      5160
     cactcgcagg caaacccagt agaacgagtg aatcgctcca tcaacgctgc aatccgtgct      5220
     tacgcacgca gtgatcaacg gaattgggat ctgcacatct cagatgtaga gcgggttctc      5280
     aataccacca tccattcgtc tatcggattc actccctact ttgttgttca cgggtgtgaa      5340
     atgaccaata gcgaagattt cagcgggaac ttcggcgaaa tggaggatga cctgaaagta      5400
     agacatcaac gaatatcatt aatcaagggg attgtggaca aaaatcttaa aaaggctaat      5460
     gaaagcgtcc gtcatcaata taatctgcga caccgcaagt tcgccaaacc tttcgaggta      5520
     gggcaactgg tgtatcgtcg caataccaaa caatcagacg cagttgccgg atataacgct      5580
     aaattagggt cccaatacct accagctaaa gtactccgtc gccggggggc ttcttcctat      5640
     gagctggttg acctcgacgg taaaaatatc ggattttggc cggcaaatct catcaaacca      5700
     gcgtgaaggt ggttcgttta ttgcccttcg aacccaatac atcgagttca ctaggttgct      5760
     cacttgggag cctccgaaca tcgagggcta gggggcagtt atcgcctaga tgcgccgctg      5820
     gtaatcatct tctttctcct tatcgagagt cggcctcttc ggacatctct atcggtgtct      5880
     tagtcaagat aggaaaccat cgcctactcc attggcggtt cgtgggaaaa ccttttgttc      5940
     catggtatct cgcaagtagc accgataggc tccaatatcc tcttctttag tggggaggaa      6000
     gacctgcaac acccacgcat tgctgtagtc cagccaaatt atgcacttcc tcctcacggg      6060
     attatcacct ccaatccctt cttataaagg ggaaattatc tatttcctaa atcccttccg      6120
     ttggaaggac tcaatcacta ctaccgtggg tggttttcgt tcggaagaaa accaccaaaa      6180
     cccacggaaa tccgtaaaaa tgtgacaatc tcaaccatga cggcgcgttg tgttgtggtt      6240
     tacttttgct ttctcatccc tctaccgcaa tcgtaggacg acgtcatgaa agggaaccat      6300
     aaaccgctgt acccgctgta ccttgatgac agcgaaggcg cggagttagc ccgcattaat      6360
     gttgtcttgt ttcgatccat tcttgtagga ggtcatttat gtatgcgccc cgtacactgt      6420
     gtgtaatttc catgttaatt tcccgtgcat agataataac accattttaa cctgttttta      6480
     tatttatttg ttcattcgta ttttaatctg ttggaatcag tgaaattcga ctgattctgt      6540
     agggaatcag cttgtaatgg acttgttttc acattcggtg tcttgctcaa gtatttctgt      6600
     gacaagaaat atttgatgcc caaaagacaa taccttgcgt ccttgttgtc ccgttgtttt      6660
     ggtattttgt aggctgtgtg tgagtcacca ttatgtatga cagtaaatgt tgtgtgagtg      6720
     aatgaaaatg aatgagtgtg attatgaatt ggcggggttt cattcaaatt gtcgtagttg      6780
     atcgtgtgca cgtgtaggcc aatgagtgag atgaatgaat gacatgattt ggatgaatgt      6840
     ggattgaatt gaaaccccat ctgcttggtg tgtataaata tcgtcacaat agacaggaag      6900
     tacgtcgaaa aaaaaacacg acaactgttc ctctgctatg tttaacaatc cttgaccgga      6960
     gactagcagg gttttaggaa gtcaggttat tttggatgtt attctgaatt ggtctggggg      7020
     agttgggaat ctttagctct cccattgaga accggatgtg tcaagggtgg tctggtgccg      7080
     ttaatagcga cgggtcccag tccttgtctg tagacaaaac catgggacgg tgtattgatt      7140
     tagtccattg ttcggtcgtt ccctgattat gtacttgttt atttatttca aattgtggaa      7200
     gaagtcttgt ttttggctag gttaggcagt tttatttcca tttatttatt tatttattct      7260
     tttaattcgt tatttattat cattgttatc ggtgttaggg tttagattag ctaaaaaaaa      7320
     aaatgttgcc aatttttttt ttcctcggtg tgggcgagat                            7360
//
ID   Gypsy-361_AA-LTR repbase;    DNA;    INV; 1206 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-361_;
KW   Gypsy-361_AA-I; Gypsy-361_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1206
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1206
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 220-220 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1206 BP; 290 A; 261 C; 333 G; 319 T; 3 other;
     tgtaacctgt ggctacaatt tacttgcatt ttgggtgttt tgcagtgtgg tgtgtttttg        60
     tgtcacccat gtgtcggatt gtttttttaa tttgttcact tgtgtgtatt ggttggcaac       120
     atatgcacca ctgtgttgtg taaatatttt taattcgttc gttttattat taattttatt       180
     tagaatcttt agtcagttag tttagaatgt agggtaaaat ttatcgaata atatgtatcg       240
     gtgagctgaa tgaaattagg cctccatctc ctcccgtagc aagaaaagcg gcagccaaca       300
     taaaccaaca taacagctga gcacggtggc aggagatggc ggaatgtttt ttggtcgatc       360
     gatgacgttt tttggggaga atagttcgag tcacggtggg atcaagtcgt gkgtagttgt       420
     tccgggaagt tttagactcc acatcgtttt tccgactggt ccctgctgga aaatatccag       480
     ccgcgtcgtg agtgctcatc cggagtttgt tctggcctcg cgattcgaaa ttgccggctc       540
     cgtgaccgaa aagttgtgct gtgtagtgac agtgaaaggg tactgggtcg ccgccattga       600
     gaggctaatc ataaaggagt ccttcgcttc tcgcggctaa gtgcaaagga ccccagtaga       660
     tacccgccgt ccttactgtg ggggctccgc cgatagagta cctcgcctcc acagttaacc       720
     gtcaagaagg acgaaggcag gtagggcaca aaggggcgtg ccacctgtgg tagagctccg       780
     aggagtctac cggaggtatc cacggtgagt gggtgtcctc ggtgtagaaa caccaccgtc       840
     gctagggggg gtccgacaaa ggagccagcc tcctccccct agctaagtgc caaggaccgt       900
     cgcttcggcg gcgaatacag cccaaggaag tcttcgcaca atccgtgcga agtggaagtg       960
     tgagagaagg agaggaagaa gaagaagaag aagagaacga ccaccgccac cgctgctaac      1020
     casgaagggc cccaacgtgt gacgtcgacc agtgccgtag tgaggagtgg agcaagttaa      1080
     ggtcagacgt agaatatagg tttttaaatt gaatatttta tttttcccca tttaacccgt      1140
     ccgaaattca aagtttggtt gaagtaccct gctccaggcc gccctgccgg gctgkcgttt      1200
     cttaca                                                                 1206
//
ID   Gypsy-362_AA-I repbase;    DNA;    INV; 7267 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-362_;
KW   Gypsy-362_AA-I; Gypsy-362_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7267
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7267
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 186-186 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7267 BP; 2404 A; 1290 C; 1617 G; 1956 T; 0 other;
     ctttggcgcc aaacataaaa ttgacttacc gtcagtttct tgtaggttga agcttggaaa        60
     atcgcatttg aaatagctag ttactacaga agtctctggg aaaacatcca ggccttcacg       120
     agacaattgg catagtggtt tctgcgctcg tgtacataca ttgggaagta tttggaagtg       180
     tattcctggc ttagcttgca aagtatttca ttgtattcgg aggggttttg atggtccaaa       240
     aaggagtaaa aataacgatt gtttgaaaaa cgagtcggta gttgaaggtt ttatagtgga       300
     gcacattgtt catcagtgcg gtgtgatttc ggagtgagtg aaacaccgga aaagaaagtg       360
     ggtttatttc cgacttctta aaactaggat ttttcaattg ttaggatttt caattttttt       420
     tagagtgcaa aaccgctcac aacagattta ggtagttttt ttttcaaatt attttcaaat       480
     tttcgttgac cagtgttgaa aaatggaatt ggccgtgttg caggcgcagt actattcgct       540
     gaatgtcgct catttggccg atgacgagct gcatcatgaa ttactgtttc gtggtgtaga       600
     tatggaagat gaatcgcgta gtaaacgaga gagagctttg cgctcactgt ttaaatctga       660
     aaaagagaat aaagtgaaca ttagctacaa gtatgacgga attgatttga ttgatgagtt       720
     gaaatggtgt gatgaaaagc ttcaggcagt gaagagcgtg ttagaaggac gaaaggttcc       780
     aaaggaaccg gaccaaaaat tcaaatcaaa aattgttcac gttttattta ggatcaagcg       840
     attgaaatct tttgctgaag acgaggaaga tttgaactgc atagcagtga tagcaggtga       900
     atgtattagg ttgttgaaca aattttattc ggtaacctcg ccacttatgg aggtgagaga       960
     ggcagaattg caaatcttaa atgaaagctt aaggaagatg cgtgaagaaa taggtggaca      1020
     agaattagat aacccagtga atgaacagat cgtgaccggg gagccaaatg agaatgagaa      1080
     taatgagaat gagaatggtg aagagcaggt taatgagata gatgatgacg tcgaattgga      1140
     aggtgcagta ggaggtgtgg atatgaatga tagggaaaaa gttacaaaac tttcggaaga      1200
     aaacgctaaa ttgaaagagg tagtgaatca actgatccag cggattcacg ctttggaaac      1260
     ttctatagta gcaaagccac ttgaaccaga gcaaataaag cggaatatta gcacaccact      1320
     agaaagaaga tcgattcaaa gtgaaaatga ggcgcgtgat aacgttaatg aagagcaaga      1380
     tttttatcaa tgggtaaaaa caaagtacgg atcaattgag agtgttgttg atagaagtag      1440
     agtaccacag cttgcccagc acgttaatca ggaagttagt caagcagtaa tatcggaaaa      1500
     gccgaaaaac agtcggttac cattgcataa atggtcggtt agatacgatg gtatggataa      1560
     cgggagaagg ttgaatgagt ttctcaaaga agtcgaattt aatgcaaggt cggaaggttt      1620
     tacggaagca gaactgtttg tatctgcaca ccaccttttt acacgtaagg ctagatcgtg      1680
     gtttatggag gttaatggaa ataacgaatt gcaaacatgg aaaaatttgg taagcgagct      1740
     taagagtgag tttttacctg tagacattga ctaccaatac gaacggctag cgaatgcgcg      1800
     tagacaaggt ccaagggaga aattccagga ctattatctc gatatggttc gaatttttcg      1860
     aagcatgtct cgacagtggg acgatgcgag gaagtttgat gtcctatttc ggaatacgag      1920
     ggtggattgt agaacagcga tgttggccgc taacgtaaat tccattccta gaatgaggga      1980
     gtttggtaaa aagtttgact caatcaattg gcaagtttac gctagaaaag agagtaggtt      2040
     tgagagagct aaacctgaaa tagaagagat tagtcaaaag ccacagtacc gccctagaaa      2100
     tgaaccggaa aataaatttc aacagggatt taaaggagga tatcagggac gaaatttcaa      2160
     cccgaattac aaaaaggcca ataatcaata tgaacccaca aaacatagga aagaagaagt      2220
     aaataatcag caaaattttc aacagaagcc aaattttaaa acaagtcagg gaaataatca      2280
     aacggaaaat aagagacaac ccgaaccgaa accttctact agtgagacta gcgctctaca      2340
     aaggattgtt aaggcgtaca ttcctgttaa gcgtggtgta tgcttgaatt gtcatgaaga      2400
     aggacacagt ttccgagact gccctgaaga aaaacatgat ttctgtgaga aatgtggatt      2460
     cttaggcttc tccacacagt tttgcccatt ctgtcagtca aaaaacctca aaaagactgc      2520
     tcattgaggc agagcagtct tggtaactcc gaaagtcctc aggctatagt gtctaaagat      2580
     ccaacagtct ttctccaaga attaggttac tcgagagtca atggtcaaac caataagcag      2640
     gaagagattg ccagtttgct cgtcaagctt agtggggacg ctagaccctt tacgagaatc      2700
     agtttaatgg ggattgaact tattggtctt ttggacagtg gtgctgcacg gacagtttta      2760
     ggcatcggag ccaagaaaat aattaaaaaa ctcaacttaa aactcgtacc ttctactgtc      2820
     actttaaaga cagcagcagg taacgatatg gaagtcctcg gatgtacaga cattccaata      2880
     acgtttaacg gaataacaaa aattttaact gtgatcgtcg ctccgaaact taaccgtagg      2940
     tgtgtactgg gatacgattt ctggcaaaag tttggcataa aacccacaat acaaaatcat      3000
     tctattgaaa tccttgacga tggtgttaga aatgaagctg aaatagagga tgatctgaca      3060
     gaacagcaaa aagatcagtt agaaaatata aagaaggagt ttttagtagc agagccaggg      3120
     aatttcggaa aaactagctt gatagagcat acaatagaga tgaaagagga atttaaagca      3180
     gccgatccag tcaggaaaaa tccctaccca tggagtcaaa aaattcaaaa aaaaattcat      3240
     acagctttag ataacatgat tagagacggg atagtggaag aatccaattc agattgggct      3300
     ctaccagtag tcccagtcaa gaaaagagat tccgaagaag ttagactctg cttggatgca      3360
     agaaaactaa acgagcgaac caaaagggac gcctacccat taccgcacca gaacaggatt      3420
     ttaagtcagt taggtacagt aagatatctt accaccattg acttgtccca ggccttttta      3480
     caaattcctt taagcccaga ctcgaggaag tacacagctt tctcaattcc aggtagagga      3540
     atatttcaat tcactcgact tccgtttgga ttagtaaaca gtcctgctac tctgagcaaa      3600
     ttgatggatc gtgtactgag tcacggtgcc cttgaacctg caatattcgt ttatttggac      3660
     gatattgtga ttgtaagcca aacatttgaa gagcacatgg aaaagctgag agacctagcg      3720
     aagcgattga gggaagccaa tttgtgcatt aacatcacga aatccaaatt ttgctgccaa      3780
     gaattgccgt atcttgggta cattctgtcc caagacgggt tacggcctaa tccagatcgc      3840
     gtgcaagcga ttcttggata tcaggttcct aattcggtaa gacagcttcg tcgattcctc      3900
     ggtatgatca attattaccg taggtttatc gcaaactaca gcgaaatcac ggcacctctc      3960
     actgacttat taaaaaataa gccaaagagg gtgcaatgga acgcggcagc cgaaaatgca      4020
     tttcaggtca tcaaggagaa gcttatatct gccccagtga tgaccaaccc aaacttctta      4080
     ctccctttcg ctgtccaaac ggatgcaagc gataacgcta tcgcaggggt tctcacgcag      4140
     gtacataatg gggatgaaaa agtcattgcg taccattcag agaaactcaa aggagctgaa      4200
     ttaaactacc atgcggcaga aaaggaggga ctggcggcac tccgctgcat tgaaaagttc      4260
     cgctgttaca tagagggcac gaagttcact ctggtaacgg attcttctgc cttaacattc      4320
     ataatgaagg ctaagtggcg ctcatcatct cgactgagtc gttggagcat cgaactacag      4380
     cagtacgaca tggagattcg tcatcgaaag ggtaaagaga acatcgttcc agatgcgctc      4440
     tcacgatcga tggaatcttt agatgaggaa cccaatgacg ggtggtataa aaagttattc      4500
     gctgctgtag acgagaatcc tgaagactat ttagatttta aaattgtaga tggtctgctc      4560
     tacaaatttg tagctgccag atctgaccta atggactacc attttgaatg gaaacaatgt      4620
     gtaccagctt ccaaacgaac ccacattatg gaacaagaac acgataaaaa tctccacatc      4680
     ggctacgtca aatgtgttga gaaaatcaag cgaaaatatt attggccacg catgagtgct      4740
     gatataaaga aatatatcgc caattgtgtg tcatgtaagg agaacaagca ttcaactgtg      4800
     tctaccgctc ccgaaatggg taagcaaagg attacgacac gacccttcca aataatttgc      4860
     atggattaca tccaatcttt gcccagaagc aagcagggca acgcgcactt attagtggtc      4920
     atggaccttt tttctaagta ctgcctgctt gctcctgtaa agaagatttc gagtgcttct      4980
     ctatgcaaaa tactggaaga gcagtggttt agaaagctct ctacgccaca aatcgttatc      5040
     acagataacg ctacaacatt tctatctaaa gattttcaac atttgctcga acgctatgaa      5100
     atccaacatt gggccaatgc tcgacatagg agccaagcaa acccagctga acgactcaac      5160
     agaacgataa atgctatgat acgctcgtat gtcaaacatg accaaaagct ctgggacatg      5220
     aagatatcgg aaatggagtt tgtgttgaat aacacaatcc attcaacgat taaattcagc      5280
     ccacattgcg ttgtatttgg acacgagatt atcagcaaag gttctgatta caaattagag      5340
     cgagatgaag atctgagcga tgaacagaga gtagataagt tgagaggagt aggtaagaag      5400
     attagtgagc tggtgagaga gcaccttcaa aaagctcatg aagaaacaaa acgacggtac      5460
     gatctccgac ataagcgtta ctcaccgact ttcgacgtgg gtcaacgagt gttcaagcgg      5520
     agctttcgac agtcgtcggc aggcgatcag ttcaatgcca aaattggtcc acaatacacg      5580
     ccatgtgtca ttcttcggaa aattggcacg agttcgtatg aagtcgcaga tttacagggc      5640
     aaatcgttgg gcgtattttc agccgcagat ttgaaaccat aggtacctaa aataaattta      5700
     gatgtaagag ctcacatcac accattcaac aaaaatcgat atgtgaagat aagaaagtga      5760
     taactatctt tggttaaaat gtccacaaaa atacttatcc ttctcatcac ttaccaatcg      5820
     attaccagtc aaatgaaacc ccggggtagt agataaagtt cgttgggtgg atgtcgccaa      5880
     caggtgcgtc cagtcatgtc gtgtaaatat ggtcgtaatc atagtaatta agcaacgttg      5940
     cgtagctgta gtcggtttta gtctcgtcgt cgaagtcgat agaattgcat gtttacctgt      6000
     aagtttgatg ttgttattat ttgcgcatgt tttcaatatt ttagaagcgt ttttttttaa      6060
     attcgttaaa ttagggtcaa taaagcagaa gaacggtagg agtcaaaatg cataactgca      6120
     tcacacaatt taaattgtct cagtcttgta tacaaagttg caaacaagct gaactgatag      6180
     aataaacatg tatctttaag agtatgtaac taaactgtgt gagttagagt caaggtcatg      6240
     gtcaagtcga cgttgaaaac aatagagcac tagattaatt taaagtcatt tcatcgtctt      6300
     atcacagtct tttcatttaa atcacatcac tttcactgtt atatattcat acccaccatt      6360
     cacgtttgta ccacgtgagt cgtaaatgac gagcttctat caagaaatca aattggatca      6420
     actaaccgaa aaatcaaaac ctacggatag atcaattggc caataatttt aatataattt      6480
     acccatgata ttgagatttt tcgtagccgg cagatcacaa aaatttcttg ataaaacctt      6540
     atcgtactta ccacatgttc gcagcatcat tccatcttca catttgacag ctgtttgaca      6600
     gtttcgacag atctcgacag aatcacgcac acagatgaac aatgataacg ttatcttaaa      6660
     gaacgtaata gaatgcaact ccgacaaacg ttttgaaata tttcattacg gaactagtat      6720
     gatttttgaa tgtgtattat tatttttgta ttatgctcca atttgttatt cgtagatttt      6780
     tacattatat tattttagtc acattgcatg ttttgttttg tagatagtat aaaaatacct      6840
     cattttaaat atgttttcca aacaatcggt gaatgaatgg ctgagatata cagaggtcac      6900
     ctggtataaa acccagtgtg tttgatcgca ggagacctga gtctagaacg ttgatggtca      6960
     gtagtaacaa aaagttataa aattgcgtgg agttggcaat atgtcgacga tgatacctta      7020
     tgaccccgat actcgtgaga aaacgtagcc taattcacac aatttttatt tctagttggt      7080
     ttattttaaa cttagtacgt caagggtgat gtgttgcgca ggttacagtc aagggagtta      7140
     atacggtccg gtaatgattt ttcgtgttgt gcaggttcag aggtacgtgt aatcagtgaa      7200
     tgctaatgcg atttgtagac aaaaaatatt tactttgtaa atatttttta cccgagctgg      7260
     gggagag                                                                7267
//
ID   Gypsy-362_AA-LTR repbase;    DNA;    INV; 950 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-362_;
KW   Gypsy-362_AA-I; Gypsy-362_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-950
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-950
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 221-221 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 950 BP; 260 A; 219 C; 257 G; 214 T; 0 other;
     tgtaagtgtt ggttatttta tgtcgtgaga gtcaccggga aattcgtgtt tagcgtttcg        60
     tagaatttaa attgtgaaat gtcaggaaaa cttgtacttc gttatgtttc caccgttcaa       120
     actcccgagc agccttagtt gtactccacc accctagact actctacgca gccaccttcc       180
     caccgcagtg ataaaaccca ccaccagagg gcttggttac catcttctgg gtagccttga       240
     ggggtggcgt aatggggtcg ttgagctcat gaagagggca atgaccgtgc aacgaggtca       300
     gggaccgcaa gacagtcgac gactccttaa ttctatcact tgcccagagt tcgtcgactg       360
     aaacagtcag caattaaagg ctacaacaaa aagttaaaag cgaaggatta agatagttag       420
     agagaagaaa tacagtttga gacgtggaag aagtgaaggc gaagtggact gcagaacccc       480
     gccggtttta aaatagcgtt tgtagaccgt ccctgcggtg tcccggtgtc catctgggca       540
     gcattccggc aacgaacccg ccgaaggccg atccgtcacc atatcggcag gaccaggaca       600
     cgtagtggat ctacaaggcc cataccccaa gccaccccag aagacatcgt cgtgctgcat       660
     cgccgtcgag gtagagcact gcacgatcta cgacagagaa gccatcgttg cagaggtccg       720
     gtagcagtaa ggtggtggag aagaagaagg ggccccgcta aggttagatt agactaagaa       780
     agtgggagtg aagctagcca gataataaag tgtttcaaga acttctgtgg tagacgaaac       840
     taagtgcgag aacttcctga ccgcgagttt tattggtgag cgtgccgacc ctgaggtttt       900
     gaatcaggga gtctctgtgg tgctcccgat tgagttaccc gataattaca                  950
//
ID   Gypsy-363_AA-I repbase;    DNA;    INV; 7232 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-363_;
KW   Gypsy-363_AA-I; Gypsy-363_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 187-187 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7232 BP; 2199 A; 1581 C; 1469 G; 1983 T; 0 other;
     attggcgccc aacgtaaaag ttttttaaat taaaaaaaaa gtgtttcact tcaaggcctg        60
     aaggaaaacc cttttttaat cggtctcccg gagaatttca attaataaaa ttattttcaa       120
     tagtcgcgtg gtcgtctcgt ggaatcagtg gactcaaata tattcttgtg aaaattgtgg       180
     aaaaagttaa ttgcggattg ttgcgagtga tgataacaca ctacataaat gccattcgtt       240
     ccaagtgttg agttgagtta caaacctgaa atttgatcta ctttattgct ttagtgctca       300
     atctggaact tcgttaaatt caactaaatc aatgtttcat gtattctatt accagaaagt       360
     gcttattttt tgttattttg tggttgatga tggaaaatta tttagtttaa gttaaattat       420
     ttaaggaaac tgtgatattt atttacttaa gtgtttcctg tgatatattt atttagatga       480
     aatttattta tttatccatc tatttattta tttatttatt atagtgtgtt tgttaaatta       540
     tttattatct atttatagat ttatttatac atttttgtat attattagat atttatttat       600
     ttatttatat agtttttcat attttttccg tttacttatt tactaaatat ctgttgagaa       660
     atttattttt catattttat aattcaaaaa taagcccaaa atggcttcaa gtcgcccaac       720
     attcgatcaa gctagtgagc ttattattaa gtggtattac accatgaggg tagatttcct       780
     cgaagttgat gaacttgatt gggaacttga atctcgatcg ataacgattg acaaaaattt       840
     gagtttatct caaaaaagaa aatggctgcg agacagtttg aaaactgaaa aactgagtgc       900
     ggtttctaac ctagcgggga ttttgaaagg cgatgtcaaa caagaaatcc aaacatgcat       960
     gctaaagttt tctaacttga aagcaaaatg ggagtcaatg aacaacggag atgacagaaa      1020
     cattcacagt gctcgcttgg tacatttagg agctcggatc gtggtgattt taacatctgc      1080
     caaaaattca ccaaatctac atagcaactt acaaaacatg ctcgttgagt tggtggaaat      1140
     gcttgaaaca gagttgaata aatcaccatt aaacgaaccg actactggtc ccgcgatcac      1200
     ggatgtgaat gatccactag atcatcaaac aaatgaaaat ttaactggac agtttgatgt      1260
     aaatgtaacc cctccacctc gaatgacagt attaagtcaa gaagatcttg attggattca      1320
     ctctttacaa aacaggatag tggatctaga atttgaactg caacgcagaa aaggaaagga      1380
     cgtaggcacc caaacatcgt ttgaggatgc tccacctcaa aatcctgtaa gaatgaatta      1440
     ttacaaccca aaccaaaact ttagttcatt tcctccttat tcccatcctc aaaatatttt      1500
     tccaaccgta gatattttca agcagtccca aggtacagat tcttttggtc cacggttgag      1560
     taatacccat agtaatcctc cgataaatac cacttttcct atttcctctc acaatccaaa      1620
     taccagcaga ccagtgatag attccctcca tcaacagcca tcatcagcta ctccacccat      1680
     tccgcatcaa atcccaaatc aaccacacta ccattcattt acaaaccaat accctcaaaa      1740
     ccagtataca gtaccatatc aaactcgcca aaccctgcca gtttccaagt ggagtattgc      1800
     caagtatagc ggggacgatc aaggcctgaa attgaatgag ttccttgagc acgttcaggc      1860
     tctctctcag gcagaacgtg tctctgagcg agagttattt gagtcagcag tacacttatt      1920
     cactgggtct gcgttaaaat ggtacatgtc tcaacgttcg acgggtagac ttatgaactg      1980
     gcagcatctt gtatttgaac ttcgtagaac ctacatgcat cctgacctgg acgccctgat      2040
     aaagatgaaa atctatcaga ggcgccagca aaaatacgaa tctttccacg agttcttctt      2100
     tgaaatggag aaactatttc ggacgatgag ttcccagatt cccgactttg agaaaatgca      2160
     aattcttcaa cagaatatgc gggtggatta caaacgccaa atgacgtttc tccctatcgc      2220
     tgatctggaa acactggtag cggcaggcca aaagttagac gctttaaatt tttcagccta      2280
     taacaaggtt tttggaaccg ataaaactgt tcaagtggtt aaccaggaac caggtggtaa      2340
     aaagaaagcc aagaacaata atacccagcc ggctacttgt gaatctggcc agtcagcgag      2400
     tgtgagtcag tcggctcagt tcaatccgaa ccggaataac cgtagtcaac agactcctcc      2460
     tcaaaatcaa agtcttaaac caaattcttt gaacgatcaa cgttcggaga cctcgaattc      2520
     tcaaactcgg aatccttcca aagattcatc ctctggttct cccattgctg gaccgtctgg      2580
     tacccaatca cgaccagcac tcacattaga ggacgtggta aacaaccata gtcctcctcc      2640
     gaataatacc tgctacaatt gtggcagatt tggtcaccac acagtcatgt gtaggcaacc      2700
     tcgtggaacg ttttgtaata cgtgtggtct acgaggattc ccgactgatt tctgtccgtt      2760
     ctgcataaaa aacggccgat ctgcgaacga aaatcgccgt ccgcaaggtc ctcaggcgta      2820
     aatttaacga aattcagtcg agaacgaacc cctccaccct tttgggagtc cgttcccaat      2880
     aatctatatg tagacacggc cgaagtttgc cagatcacgt acccctacga gaacgataat      2940
     cgtccatatg tggcggttaa aatatatggt ttaaatcttc acgccctttt ggacagcgga      3000
     agtaactaca ccataatcag cgagaaaatc ttctctaagc taaacctaaa acgtctacac      3060
     aagccccctt caaacactac gcttagatct gccagtggag accgactaca ggttctcggt      3120
     gaagcccatc ttcccttttc tgttcacgaa aaagtgcgga tcgtcccaac aatggtagta      3180
     gccaacctct ccatagattg catttgtggc atggactttt ggagaaaatt ccaaatccaa      3240
     cccactatgc tatccaacag gcgagattcc attctggctg ccgtaggaga atccgtaaac      3300
     gattccgcgt tatcagagaa ggagaagtta gtgattgagg aggtgaaaaa agaattcatt      3360
     ccggcacgta atggtagtct aacattgaca ccattggccg aacataaaat aatcctcaaa      3420
     gaggaatgga aggatcaacc tccagtccgt cagtttccat actgtatgtc accaaaaacc      3480
     caagagttgg tcgctgttga gttgcaaagg ctattggata tcgggataat tgagaggagc      3540
     agctcggatt ggtccctaaa ctgtgttccg gttattaaac caaataaggt aaggttgtgc      3600
     ttggacgcgc gcagaatcaa tgagcgaact gtgcgtgatg catacccttt gccgcaccct      3660
     ggacgcattt tgggccaact tcctaaggcg aaattcctct caacgataga cctttccgag      3720
     gcctttctac aggtccctct cgacccgcaa tctaggaagt tcaccgcgtt cagtgtgcaa      3780
     ggcaaagggt tgttccagta caccaggatg ccatttggcc ttataaacag tccagccacc      3840
     ttggctcggt tgatggattc ggttcttggt catggtgtac tggaaccgta cgtttttgtg      3900
     tacctcgacg atattgtcgt ggtcacagaa acgttcgagc atcacgtaca gcttctcact      3960
     gaaattgcgc gtcgtctgag ccaagcaaac cttagcatta atttagaaaa gtcacgcttc      4020
     gttgtttcag aggtcccatt cctaggatat cttttgagca ccaacggtct acggaccaac      4080
     ccagacaaaa tacgaccgat cgttgaatac gagaggccgt caacaatcac taagctccga      4140
     aggttcctag gaatggtgaa ctactaccga aggttcattg aagatttcag cggagttacc      4200
     gctccgttaa gcgaccttct aaaaaccaag tcgaaggtga ttcattggac cgactcggca      4260
     gaagaagctt tctgtagaat taaggagctt ctaatttcct ctcccatact gggaagcccc      4320
     gatttcacaa aagaatttgt gattcagacc gacgccagtg acgtcgcggt ggcaggaata      4380
     ctgacgcagc agcaggaggg aggcgagaga gtaattgcgt acttctcgca taaactcact      4440
     acgccacaaa agaactacca cgctgctgag aaagaagccc tggccgcaat cctcgctatt      4500
     gatgccttcc gtggatatat agaaggatac cacttcactt tgatcacgga ttcgtctgcg      4560
     ttgactcaca ttttgaaaac caagtggaag gtgggatcta gatgtagtcg atggtcatta      4620
     gacttgcagc agttcgacat gaccgtgatt caccggaagg ggaaggacaa tgtggtcgca      4680
     gacgcactgt cacgaagtct aataaccacc atcgactcat ccgattcatc ctggtactcc      4740
     acaatggtgg acaaagtgtc gagtcagcca gacgaatacg tggatttcaa ggttgaagaa      4800
     ggccgccttt tcaaattcat ttcgtccaag gatcaccctt gcgattcccg cttcgagtgg      4860
     aaaatggttc ctcaaagcag tgaaatcccg ggtataatcc acgattgtca cgattcgtcc      4920
     cttcacccag gttatgaaag gacgctggct cgtatacggc aacggtacta ttggccgaag      4980
     atggccggag aaatccggtc atatgtccaa cagtgtgcca cttgcaaaga ggtcaaacct      5040
     gcctcaagac ccgtggcacc agaaatgggc aatatgcgaa tcgccgaccg tccgtggcaa      5100
     atcatttccg ctgattatat cggtccactt cctcgtagtc gccggggtaa tcaacatatg      5160
     ctggttgtga cggattattt ttcaaaatgg actttgatcc aaccagtcag aagcgtcaat      5220
     agtgcaagcc tctgctcaat tctgaaggaa cagtggatat tacgaaactc tgcacctgaa      5280
     gtaataatca cagataatgg gagtagtttt gtatccaaag agttcaaaca actgttaact      5340
     cagtttaaaa taaaacactg gcttaattct cggtaccatt cccaggcaaa tcctgtggaa      5400
     agggttaacc gaaccataaa cgctgcgata cgcacttatg ttaaggagga ccaatctctt      5460
     tgggatacac gtaccgcaga aattgaaatg attcttaaca ccagcataca tgcttcaaca      5520
     ggatttaccc catactatat aacacacggc cacgaacttt cagaacttgg atccgatcac      5580
     aagttggcaa gaaacgacga aaatctttct cacgatgagc aaatcgaacg aaggaggcaa      5640
     atgtttaccc gcatctatga cctagtgagc aaaaatttag aaaaagcaca ccaaacatct      5700
     cgtaaccact ataatcttcg tcatcggcaa ttttccaaat cgtttgtcga tggacagctc      5760
     gtttacagac gaaatatgaa gctctccaat gccgcagaga aatacaatgc caaatatggc      5820
     ccacaattcc ttccatgccg cgtgaaacgt aaaatcggtt cgtcatcata cgaactagag      5880
     gacttgcacg gtaaaaatct tggtatctgg ccggcaatcc atctaaaacc aggataaaca      5940
     tcgcaaaaaa aatcagactg caccaggatt tggaaattgt cgttgttcaa tgcgtaaaca      6000
     aattccgtca tcactttgga aacagtttat tcctctttcc atcatcaaca aatcatcgtc      6060
     atcactgttt gttgttgtct tgatcatcct cccacgcatg tttgtctaga aagcctaaaa      6120
     atatacaaaa ataatctaaa attagtatca tacttaccgc aactcaactt tcgccatcag      6180
     ttttgttttg ttttgtcatc gttgtagtcg ttgagttcat tgacagatgt taaatgtcat      6240
     ctactacaca ttaggggtgt gcaagagacg cgcacgcagc tgcatccgtg tcggagttcc      6300
     gataggatac acggaaaatt gaaccgtgcc actcagcgaa atttcattcc ttttttcact      6360
     tgcaaaagca agcgagcaaa cagaaatctc gagtcgagtg cgctagattc aattaatgtt      6420
     aaataactaa aagtcatagt cactctgtcc taggagagtg ataatatgac aaacttagtt      6480
     aaaagggtac cctaccatag ttttagtcaa gctcataaat ctagcatcga aaggcagatt      6540
     tgtatgtata attaagtgtg tgaatgacag tatgtttgtg agcgtgaatg ataagggggt      6600
     ttatgtatga gtgcgtgtga atgaatcggt ttgaatgtgg tagtataata agtgttttgt      6660
     ggtccaaggt gaatcttgtg acagttgatg ttgaaagaga cgttgaagaa agtttggtct      6720
     ctatagcact aatttaaaat caacccaagg agttgaggtg agaatttctg acctgtaact      6780
     gaactcaaca actgaaatga tggcctatac atgtagttta ttctgacgca ccatgaacaa      6840
     tctcgacaaa cgcaattttc acaatcctag caagaaacaa ttggaggatt tactattcca      6900
     caggctttga cagttccctg gtagctgctc gtgactaaag gtggacaggc tcactccact      6960
     agattctcac aattcgttgg aaagagctcc tctggttact atgaaaaatc attcaacgaa      7020
     ttgtaactgg atctggtgga gcagtagtcg catctgatgg acaggctcac tccattagat      7080
     ccttacaatt cgttggaaag agctcctctg gtctccatga aaaatcattc aacgaattgt      7140
     aactggaact gatggagcag tagtcgcatc gaaggtcggc agcccaaaaa aaaaaaccct      7200
     ttgggttttt tttaccccga ctccgggaag at                                    7232
//
ID   Gypsy-363_AA-LTR repbase;    DNA;    INV; 1860 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-363_;
KW   Gypsy-363_AA-I; Gypsy-363_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1860
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1860
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 222-222 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1860 BP; 555 A; 301 C; 335 G; 668 T; 1 other;
     tgtgaccgct cactttaagg tcacaataaa atatttgttg gcaaggccag ttagaggttt        60
     agtcccaata tattgttatt tatgtaatgt gccgttttaa aacaattaaa tgtctaagtg       120
     tgaaataaat atctgtctcc acttttatta gtgtttgagt gatgtttatc tcgcaattag       180
     tagtgttttg gttgatgtct tccacaaaac tatttatttt gtttgtaacc ttactccgac       240
     cgtagattag atttatttat ttatttattt atttgtttat ttatttattt atttatttat       300
     ttatttattt atttatttat ttatttattt atttatttat ttatttattt atttatttat       360
     ttatttattt atttatttat ttatttattt atttatttat ttatttattt atttatttat       420
     ttatttattt atttatcctt ttttattaga ttacttcgat tgaatattta cattattatt       480
     tacataattt atttatttac tcagattgtt tatttacacc aaatttattt atatatttat       540
     ttagaacatt atttacatat tactagatct gttatattat caagaatatc aaattttgcg       600
     gaaacaagta ttagggtttt tgaattttgt taaggcaaag catgcagcca attttgtcgg       660
     agtaggtgtg taatttagta tagggcatca accaaactcc ttttagtgtg taagtcttcg       720
     ccgaccgact gtcatcgttc gtccttcttc gtgtccacgt tcgtcatcgt catcatcgtc       780
     tagaccttga ccgtgagtta tgtaatatga tcatggacta taaataggct actccaacta       840
     gggtggggtc tcttgtttaa ttttaccgtc cggaggagtg aagttagtgt gtcggtccgc       900
     gggatagaac gctacattag ctatccttag tagttccgtg taagataacc gttacgctga       960
     aacgtgttaa aacttacaaa ctagtaaaaa cgtatatatc acagctaaaa taccctaaat      1020
     taaaaatacg ttaaattgct aatacgggcc attgttaagt aaaaccacct acggctagaa      1080
     aattaagtgc accatttagt gaaaaaacgt taattctagt cgcgttagtc taactttggc      1140
     aaaaccgttt ttagtaattg aatcaagcga gctggtggtt tgaacaatag aactgcagtg      1200
     aaaaattaag agtggtgagc ggacagaata agaaaaggta ttgtgttaag actgtgtctg      1260
     tcctgctcaa agtgtggtgc aagctcgctt gattaaacca ctcaaaagtt gcgcgcgcga      1320
     tttggtacca ctccccgggc atggaacaat ggccttcgct ataatggccc atacgacaca      1380
     cgaacagtgg ttcccttgtc aagtgtgggg acagtgaaag aaagtaaaga agagtccatg      1440
     ggagaagaaa agtgaagaga gtagaagcag aaaagaacga gaagaagagt tgtcatcgat      1500
     ggagttcctg accgcatgtt cctgaatgtc ctgcatgtcg accaacgaac ggccgcaccg      1560
     gtgagctcac aaaaatgaaa aacaataaat tgtaaattga aatttaaaca cgctctttca      1620
     aaagttttga attaaatatg tatggccact aaaccctaac tgcatcttct aagttaatct      1680
     ttagagaaaa atcttgtttt ccgccatttt gtattgtatt tgtccacctt gccaccaaat      1740
     attcacggga agattgtccg ggagcaccat ctgaagcgac cctgaaaagg tgtgttgtta      1800
     acccctgtcc tataggtttt cccataacag gggttcccac catgctttca tatagtawca      1860
//
ID   Gypsy-364_AA-I repbase;    DNA;    INV; 7756 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-364_;
KW   Gypsy-364_AA-I; Gypsy-364_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7756
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7756
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 188-188 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7756 BP; 2496 A; 1538 C; 1653 G; 2052 T; 17 other;
     ttttggcgcc caacgtgggg ctatttgaga aaattagggc gtgcgaacaa attataggat        60
     attaaaattt tgcatcaatt gcaattgttt cgaaaagttt tggaattttg agcttgatta       120
     tttttggaac tctttcttag gataagtact cacgtaaaac ttattgaatt gggatacgtt       180
     aggaattctt cttcgtcctc gttcggattt ttttagtcga ttacgttgaa ttaatcggtc       240
     gcgtcgaacc taaaataaag aataagatta gtgaattgga tttagttagt gaattggatt       300
     tggatttgtt tcttctagtt tataaggcaa ttgaattctt ttaaatattt ttttcttgtt       360
     atttcattga attatttctt gttatttttg aattttgcat ataatggcgt atgcctcgaa       420
     tcaaatcggc ctcgggtcgt atattaatcc gaacgatctg ttacccgacg aagtgttgta       480
     tgaattggaa ttacgaaaca taaatatgac ccatgctccc cttgaagaac agagagtaaa       540
     gttgaggagc ttgcagttgg atgagctacg aagtccgaaa gtattaaaga ccaataagac       600
     catcgaagat gaactttcgg tcatccaggt taagttggtc atgatcagac aggactttga       660
     agcccatggg ggaagggaaa ggttgatttc gcggttacgt caccttcgat tgagagtgat       720
     tcggttgaac gcagttaacg agagacaaac caatttgaag gaggaacttc ttgacgagat       780
     tgaattcctt tttgatacat ttggtcaccc tgaggataaa acaccaatga cttcaacgtt       840
     gaacgaacga ggaactaaac agcgaagtac tggagcgatt cccagaaatc cagcactaga       900
     atttccactt ccaaactctg cagaggatgg agccgcatct ttggcggttt taagagataa       960
     tcccaccgaa gtcgcaaggg agaccattag tggattgaga cgtcccaggg ttggttttct      1020
     gtctgattcg aatagaaggg aaaatttaac tagtaatcaa tcaacgcatt ccaatgactc      1080
     gtttaatcac cttttccaag gcactcacac attacccccg acttcgactt tgctcccgtc      1140
     actgatgccg acattgctgc ccacatctgc aaacctacca ccacctctag taccaccgcc      1200
     atcatccggt ccaccatcga caaatcctct cagaacacct ccactcacaa ttcctccacc      1260
     accgtcatat cctccaccat caacaggtgc ccctgaggag tggagtccag agactccgac      1320
     catcgaagaa caccatcgcc ttagggccga agtcagtaga attgttgagg atgtattgtc      1380
     ttctcaatta gaaaatatga tggttcggat ttcccaggga atgcaagaaa tgcaacgaag      1440
     agctggaaca caacatgtag aaaacgtgac tagaagggag aatgtgtatc aggacttgta      1500
     ctcggaagcg aaccataatc ttccagaacg tggatttcat catatcagag gagagcctca      1560
     accggcgata cccacctccg gatttagaca caatcgcgta gaaaatcaga cttcaacgcc      1620
     aattcaaatg agcggtagag tcgatacacg tccaccatta gtagctgatg ctccaaggaa      1680
     tgaagtacaa aattctgcgc gtccaattga ccatttaagc tatgacagga gcaattcaca      1740
     caaaatacct attaataaat ggccaatcag atttagtggg gaaccgaagg gaatgtcagt      1800
     cgaggaattc ttgaaaaggg ttgatgttct ggccagaaac aatcaggtgt cagagcaaga      1860
     actgttgagt aaggcgaatt tcttatttcg gcctgaatct ccagccgaaa tttggtatta      1920
     cacttttagt aacaaattta ccaattggca aactttaaaa tattaccttc gtttgcgttt      1980
     tgaagtacca aacaaggaca aagttattga aagggagata cgtgatcgga aacaattacc      2040
     gaacgagact tttgttactt ttatggggga aatcgaacgt ctttgtcagc aactatcaaa      2100
     accaatgtct gagagaatca aacgaagtat tctgatagac aatatgcgcg actggtacag      2160
     gccacaccta gcatttatcg ataccgatac tctagacatt gaaactctat gtaacttgtg      2220
     ttatgagctg gataaatcgg tatatcgctc gtatgcacag cgtaccagac catacaatgt      2280
     ccattgtata gatggccatg actacgacga agagcagaat ttcgaagacc ccgaaattaa      2340
     cgctattacc cgaggtagac agaggagtag acaagcagaa gaggtaagga acgatgtgcc      2400
     gaaagaacaa gtgagcgaac aaccaaattc aattctatgt tggaattgtc gccaattcgg      2460
     gcattattgg agggattgct cgaagaataa gaaattgttc tgccacattt gcggtcaacc      2520
     tgaagtggtt gtawtgaatt gtcccagtaa tcaccgaaat cctcggcagg agtcaaaaaa      2580
     cgagatgccg gagagacact agggagtaac tcttctccaa tcgaacaaac gactccctgt      2640
     tcaatcgttt acgacaagtt tccgccaatt atgacgattc atgtcaaaga aaaccgatgt      2700
     ccgtacatca cggttactat atttggaact gaaattaaag gactactaga ctcaggtgct      2760
     gcagctagta ttcttagcga tcagggaatt ttggacaagc ataattttcc gaaaactgct      2820
     accaatattc aaattcgaac ggcagatgga acaccacatc aatgtgtctc gttgatccac      2880
     attccattta cgttcaaggg aataacaaaa gtaattccta ccttattcgt cccaaatctt      2940
     gcgaaaaagt tgattttagg caacgatttc tggaagagct tccgaataac tcctgcgttt      3000
     gagaataatg ggcaactcac gcgtttagaa acaaattgca ttggaatcgg atcagttgac      3060
     gtgaattgca tagaccgata ttttgcagaa gatggagtcg aaatcaactt ggtcttggaa      3120
     cgttcgacag agatcctcaa gaccgaacgc cctgaggaag atattagctt ggatttgccg      3180
     tcagttgaat ccccggatag ctccaccatc ggcgaagttg tcaccgaaca cgatttgtcc      3240
     aaagacgaac gaaacgaact tcttagaatt gtgaatcact tgaagggaga tgggaaatta      3300
     ggccgaacgt cagttttaca gcacagaatt gagatcttgc agggagaaaa acctaaaaag      3360
     cctcctagat atagatggtc acccgcaatt gagaaagaga tggaacgaga aataaaccgt      3420
     atgaaagaac ttgatgtcat agaggaatcc acctcagatt ggtgtaatcc gctcttgccg      3480
     gtgaagaaat cttcgggcga atggcgactt tgtctcgatt gtcgacggat aaacgaggtt      3540
     accaaaaaag aagcctaccc gttcccagac atgcaagtga tattaggtcg aattgaaaag      3600
     gctaagtact tttcgataat cgacttgtcc aaagcatact ggcaaattcc tttagctcca      3660
     gaaagccgag attatacttc atttcgggcc ggaaagcatc tttaccgatt caaggtgatg      3720
     ccttttggat tgaccggagc accagttact caaactaagc tcatgaaccg tgtcttaggg      3780
     ttcgacttag aaccacaggt atttgtatac ctagatgata tcgtggttgc ctccaaaact      3840
     ttggaagagc atttcaggct cctgagaacc atagctgatc gactaagggc ggccaacttg      3900
     tcaataagtg tcgaaaaatc aagattctgt caaaagmgaa tatcgtattt aggatatatc      3960
     ttatctgaag aaggattgtc tattgacagt ggaaagctag atcccattct caactaccca      4020
     tcacccaaaa ctttgaaaga agtgagaaga atgttgggaa tgattggatt ttataagcaa      4080
     ttcattccaa attattcaac catattagct cccattacaa atcttcttaa aaaaagtaaa      4140
     agcaaattaa tatggaatga ggaatcggaa caagctttaa ataacataaa gggaatactc      4200
     acctcgccac ccattctcgc taatccggat tttagtcagc aattcgtcat tgagtccgat      4260
     gcatccgcgg ttgctgccgg agcagtgttg gtgcaatacc aggaaggtgt acgtcgtccc      4320
     atagcgtttt tctcgcgaaa attttccgca acgcagatga aatactcagc gacggagcgt      4380
     gaatgtctcg ctgtaatact ggcaatcgag aaatttcgac acttcgtgga aggaacgcaa      4440
     ttccgtgttg ttaccgatgc gcagtctctt aagtggctca accagatcag cgttgagggt      4500
     aactccgctc gtttggcaag gtgggcgtta aaactgcaac agcacgacat tattttagaa      4560
     taccgaaaag gaaaacttaa cgttatcgct gacgcactat ctagagcgat cgaggttgat      4620
     gtactttcgg ccgatctaga tctccaacag ttgaaaacta atattgaggc gaagccggaa      4680
     aagtacaaag atttcaaaac cgtaaacggc aaaatctata aatacgtgcc cacaggtcgt      4740
     ttagaagatt ctcggtacga atggaaacta atcccaacaa aagcagatcg aatgaagatc      4800
     cttgaagcgg agcacaatat agcccacttt ggattttata aaaccttgcg aaagatccag      4860
     gaaaaatatt attggccagg gatggccata gacgtaaagc gttattgtcg aggctgtgac      4920
     acctgcaaaa catcaaaatt tccaaatagt gctagggttc cgccgatggg acgacccaaa      4980
     attgccagca tgccatggca aatgatttct gtggatttcg tgggtccgtt tcccagatcg      5040
     aaattgggaa acactacact cctagtggta acggatcatt tctccaaatt tgttttaatt      5100
     caacccatga gagaggccaa aactcaaaca ttggtaaaat tccttgaatc tatggttttt      5160
     cttctctttg gcgtgcctga gatcctcatc tccgacaatg gaccacaatt taagtctatg      5220
     ttgttcgagg cattgctttc aaagtacaag ataagtcact ggaagaatgc taactatcac      5280
     ccagcaaaca atcccacgga aagggttaac cgggtgattg tagccgcaat tcgagcatat      5340
     ttgaaaggag gggaccagaa gttgtgggac agcaatctac aagaggtcgc tatggccata      5400
     agaactgccg ttcatgaatc tacggagttt acgccgtatt tcacaaacca cggcagaaac      5460
     tatgttggat ckggagatga atacgctwat ataagagaag gatctggaga acttgactat      5520
     gacactaagg cattaaatga cgaaatgaag caggtctatg agcaagtcag aacaaacttg      5580
     aagaaggcgt acgataaata cagcaggtat tataatctac ggtcacgagc tgttcattca      5640
     gattttaaaa ttggggaaat agttctcaag aagaatttct tcttatctaa caaagcgaag      5700
     cacttcaatg caaagttagc tgacacgtac tcacccgcta aagtcatcgc aaagcgtgga      5760
     acccactgct acgagcttga agatttgtca ggaaatcggc tgggagtatt ccgttcagca      5820
     gatctgcaac gtaaatagga cactgkatgt aaagctatgt cggtgtaccc tccctgcagg      5880
     tgcacataaa cgaaacgaaa ttaaacactc gtagaggcac acaatcgtaa ctccaacgtc      5940
     gagatgtcag ccagctgttt cctccgttgt cgagatacga gaactcatat actagcaaac      6000
     gtaattatag atcgcaggaa aaaaaaaagt ttcactagta aacactgtag aaattccwgc      6060
     tatgtcggcg cactatactt tggagtgcgc ataaacaaat caaaattaaa aaaaaaaaaa      6120
     aaactcttcg aggcacacta tcaaactcca acgtcgagat gtcggttcac tgtttcctcc      6180
     gttgtcgaga acataaacac atacacgagc aagtactctc wtagattgct cggaggtcta      6240
     aaccaaagca aaacactacg tgatccagct atgacggtgt gccgtgcttc tacggtacac      6300
     ataaaccaac tattaagcaa acactctatg aggtatataa ctccaacgtc gagatgtcac      6360
     aaagttgttg cctccgttgt cgagaaatma gattccagac tcagactaag gtcaggagag      6420
     accttgaaaa attgtacata cagctgtaca tagaacacta acacagtatg gattcggtag      6480
     agagatcatt cgattatcaa tacatgtata taaattcact ttcggtttcg ttgaaattgg      6540
     taaataacgt tgtacatatt attaagataa ggatagcact gaattcatma taaaatttca      6600
     ctacattttc ttgtwaatta tcagaattta gacacttact tcattatawa gcaataattt      6660
     tccagcttcc aatgccattt tccakccttc caaattcact gaaataaaaa acaaatacac      6720
     acaaagaaaa accaatttag gcccaacatt ttcaaaaaaa aatacagctc tttccatgac      6780
     ctttttcgaa gccattccat aatacactaa agccacataa attttcacga tcacttctcg      6840
     tatgcaagcc cacccaattc acatttcact aactatttca cgcgattttc ggaacattca      6900
     cgacggactt caacacgcca tattggctcg cgacgtagaa ctgactgaca gcataaagtt      6960
     agttcggaca ttgtaggaga gaggagattg tagtggtgaa gctacaggca ttaaagatac      7020
     taccgtcgcg gttagattac cggatcatta ctaagaattt gtacatgggg gaaagcgtag      7080
     gagtaattta tggacgtcwc gtagcaaatt ttttcggatg gttatctgaa agtagaagca      7140
     atagtcttca gttgcagtgc gakcgtcgcg gtattcagtc gagtagatac ttgacatcga      7200
     agttataatt cggtattcgg ttwagtgctt tatgctcaga ttgatatctg agtaggccgt      7260
     tgaaggcgaa gaaaggaatc agtggggata atgaaaatga agaaggggtg atgatccgca      7320
     aaaaaaggaa agagtggaag agttccgtga atagtcgaag atcaagatgg agtagaaaat      7380
     ttcataaagt cgaagatata agtatagcag taatgaagaa aatagatatt aaaagtgttt      7440
     atagtggaat agtttgtagc cattgtttag tgttttgctc aaaaaaagta gttatcgttg      7500
     gaattggaat catcatctag atatcgtkca ggaattgcat gcattgaagc ctttggatta      7560
     cgcagatgag atacttgtgg agataaggta agatggaaga catcttgaat ttgatcggtt      7620
     stataattta ttatttttgt atatatccta tattttcgca tgaaccttaa ttaaaacaat      7680
     tggattttgc ccaagaactg cagaaaaaaa aatattttct gcgtaaatat attttttttg      7740
     gtcggaatgg gtgtag                                                      7756
//
ID   Gypsy-364_AA-LTR repbase;    DNA;    INV; 1742 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-364_;
KW   Gypsy-364_AA-I; Gypsy-364_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1742
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1742
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 223-223 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1742 BP; 475 A; 347 C; 403 G; 517 T; 0 other;
     tgtaacgttg ttacatagtt gtaaccgttt tctttatttt cgattggttc acttttcgtc        60
     tcgaaaagtt gagtgaaatc gttttatagt cgtaagcaat aagattgaat tatccctttt       120
     gcatcggtag cgcctcaagt ggtcggtttt agaatcactc caaaacccct ttcaagcgca       180
     attttaagtc actcgccgtt tttcttaaaa aactgatgag tagatgagag aaatttgacc       240
     aatcttttat ttaaaataat tgcgtaagaa ttataaaaga aaaagaaacg ccaatcaata       300
     gctcttttcc gagttgaacg acttacaaag aggacgttgt ccctaagcag tggaagtttt       360
     gtatagaatt gttagaaaat cgttcaacca cgttatagtg agttttaata gtcgagtgat       420
     tgttctttaa atgttatata gaatgtttta aaactactta cagttatcgg agaaatatag       480
     gataaatcag tggaatagct aataggccca tgtgtatgga aacacgaatt tccattgtga       540
     gttgttttgt actagttgtt tgtagaacgt ggtttaatgt tgcaattttt tgttatagtc       600
     tttcgttaga atctgtgact tagattatta acaaatttaa gaagtggctg ctcgaggctc       660
     aggtaagact ggaggaaaat cttctgtggt gtgctgtcaa atgtcgaggt ttctggtgat       720
     agtgatttta atggacatgt ctgtggtttt tgtctttttc tttcgtgaag gaacttaaat       780
     ccttcacgcg aaggtgtttc tgccgggtct agaaccggac agtaggtcgc cagaggattc       840
     gaacgctccg gattctttta gcggatccag aagcttggcg gtttgtaggc tataggcctc       900
     atcgtccggc cagtgatacg ccagtgcacc tacgggccag ggagaacccc cacgactccc       960
     gggaattgtc accagcagcc aattactgga caaattcccc caaactcaat tggcctcgag      1020
     taagctggcg aatcgagcca acatcaactg ctcgaatcgc atcgcagcgc agatcggcat      1080
     cagcgcagcc gagactcaat ccagctgaca gcataggttg gattcgtgcg taccacacca      1140
     ctaccatcac gactattgcc acatcaacca ccactactac cgtcaccatc gagcatctgt      1200
     accaccatca tcacgaccgc cgttggatcg cctgagctcg agccggagcc gcacatacac      1260
     aaggttagat ccaccctttt cttctatgta ttttctgcta aaaatagaac ggttagagta      1320
     gagtcagtct ggaaattgtt tatgtaccag ctggcaaggg acaaaacgaa gcacggccgt      1380
     gcgtttgaaa agtaatagta ggagtatagg agttgtttgt tttgatcaat acactcgcaa      1440
     ctaaatagcg gtctcggagt tgttttttga tgaggaagga gaaattgatt ggttcggggt      1500
     tggattagct ttccgagtta tatcggacga aataaggttg tttgagtttc agttattgcg      1560
     tttgaattgg gtcggttcgg tcaggaattt cgagactttg aaggactcgc cctgagtctc      1620
     gccgggtaat agaacttgct gcttcacatg caagcgactt cgtcggcttg cttggcgctt      1680
     aagtgaagcc agttaatcga aatccaggat cggttccaac accaaaaatt cgaactgtta      1740
     ca                                                                     1742
//
ID   Gypsy-365_AA-I repbase;    DNA;    INV; 7414 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-365_;
KW   Gypsy-365_AA-I; Gypsy-365_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7414
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7414
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 189-189 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7414 BP; 2260 A; 1587 C; 1499 G; 2055 T; 13 other;
     attggcgccc aacgtaaaag ttaaaaaaaa aaaaaaaaaa aaaaaaagtg ttttacttca        60
     cggcctgaag taaaaccctt tttttaatcg gtctcccgga gaatttcaat taattaaatt       120
     aatttcaata atcgcgtggt cgttgagtgg aaatagtgga cccttattaa ttattgtgaa       180
     aattgtggaa aaagcaaatt gcggattgtt gcgagtgatg ataacccact acataaatgc       240
     cattcatttc agatgttgaa ttgaattaca aatctgaaat tcgaaccact ttattatttt       300
     cgagctcaaa ctggaacttc gtcaatttca aatgttcgat gttgcatgta ttcaattagc       360
     aataaatgct tatttttctt atttattgtg aataattgtg aaagatttaa tttttcgaat       420
     taaattattc aaggaaactg tgatagcttt atttatttat tttcttttat gtttcctgtg       480
     atatatttat ttggcatatt catcatctat ttattaagtg atttatttat ttgtgttgtc       540
     tcttaatgta tttatttatt agataaattt atttacaata tttatttact taagagcttt       600
     atttacttgt attgtctctt aatgtattta tttattagat agatttattt acaatattta       660
     tttamttatt aagagattta tttacttgtw ttgtctctta atgtatttat ttattagata       720
     gatttattta caatatttat ttacttattt atcagagatt tatttacata ttctgtaaat       780
     atttgttgcg aaattccttt tctwattttg ataaaaggct aaaatggctt tagctcgtcc       840
     aacattcgat caagctagtg agctcataat caaatggtat tatggcatga gagtagattt       900
     tcttgaagtc gatgaattag attgggagct ggaatcgcga tcgatagtga tagatgcgaa       960
     tttgagttta tcccagaaaa gaaaatggct acgcgatagt cttaaaaacg agaaacagtg      1020
     ttctgcwaat agtttgaagg gtattttgaa aggcgatgta aaacacgaaa ttcaaacatc      1080
     tttgcaaaaa ctttccgaat tcaaggctaa gtgggattta ataaatagcg aggatgaaag      1140
     gaaactttac agtgctcgtc tactacattt aggagctcgt attatagtga ttttaacttc      1200
     ggccaaagat tcacctaatc tccatagcaa tttgcaaaac gtgttggtag atatagtagg      1260
     tattttggga ccagagctga acaagtcatc cctaaatgaa tccttgactg caaacccaga      1320
     aaataatgag ccaggaacaa gccaagcaaa tgtcaatcat gaacgggtag agttggatgt      1380
     cacaccgcct cctagaatga ctgttttaag tcaggacgac ctcgattgga ttcattctct      1440
     gcaaaacaga ataatggatt tagaatttga gttgcaacgc aggaaaggaa aagatgtggg      1500
     cactcaaact tctgatgaaa ttgttccgcc mcaggaacca ccccgactta attactttaa      1560
     tccgaaccat aacttcaata cctttccttt gtcccactcc caacctcaaa atcccctccc      1620
     attccaaaat ccattcaagc aatcccaggg aacaggttcc ttagaaaacc gattcagtaa      1680
     cattcatagt aatcctaatt tkaatacgac tttccctgtt acttctaata atccatattt      1740
     tagcagacca gtagtagatc cgttccctca acatccaacc ataccaacac cacccatcca      1800
     acaatctgtt cccaatcaag tgccttatca atcctttgca aatccttacc cttacaatca      1860
     atatgcagcg ccttatcaaa ctcgccatac tctgcctgtt tccaagtgga atatcgcaaa      1920
     gtacagcgga gatgatcaag gtctgaaact gaatgagttc ctggagcatg ttcaggcatt      1980
     atctcaagcg gagcatgttt cggagagaga gttatttgag tcggcggtgc atttgttctc      2040
     tggatcggcg ttgaagtggt acatgtcaca acgttcgact ggcaggttaa tgaattggca      2100
     gcaccttgtc ttcgaactcc gtagaacgta catgcacccc gatttagacg ccctgataaa      2160
     gatgaaaatc taccagaggc gtcaacaaaa gtatgagtcg tttcatgaat tcttcttcga      2220
     gatggagaag ttgtttcgta ccatgagtac ccagatccca gatctggaga aaatgcaaat      2280
     tctccaacaa aacatgcgtc ttgattacaa gcgtcaaatg actttccttc cgatagctga      2340
     tttggaaaca ctagtagcgg ctggccaaaa actcgacgct ttaaattttt ccgcctacaa      2400
     caaggtcttt ggaacggata aaacggtcca agcgatcggt aacaaagaac caacggcgaa      2460
     gaaaaaacag aaaaatccta gtgsccagtc tgatgctcat gaatctagtc aaacagctag      2520
     cgtagggtcg tctccgcagt accatccaaa tcgaaatatc cgtactccac caaatccccc      2580
     acaaaatgcg aacaacaaac aagtccctcc taacaatcaa cgctcagagc cttcaaatgc      2640
     gcaggcacgg aattcgtcga atgatccgtt gtacaattcg tctgtagcag gaccatctgg      2700
     cagtcaatct cgtccagcgc ttaccctaga agaggtggtt aataaccaca ctcctccccc      2760
     taacaacacc tgttacaact gtggtagatt tgggcatcac actgttatgt gtagacagcc      2820
     ccgtggaaca ttctgtagca cgtgtggatt acgcggtttt cccactgatt tctgcccttt      2880
     ttgtataaaa aacgggaaac atgcgaacga aaatcgccgt ccgcaaaacc wwcaagcgta      2940
     aactcaacta cttctagttc tgaacgaact ccaccacctt tttgggagtt cgttccatcc      3000
     aatctatacg cagattcgtc tgaagtgtgt catattacat atccttatca aaatgataat      3060
     cgcccatatt taccagtcaa aatttatggc tttcacattc acgctctgct agatagtggg      3120
     agtaatcaca cgataatcag tgagaaaatc tactcaaaac tgaattccac gcgtctgcat      3180
     aaacctccac gaagtatttc actgcgttct gccagcgggg accaattgaa gattcttggg      3240
     caagctcacc tcccattctt tgttcaaggg aaggtacgag taattcctac tctagtagtg      3300
     gcaaacctct ccatmgattg cttatgtggt atggattttt ggcgaaagtt caatatccaa      3360
     cctaccatgc tttcgaatgg gcaagaggca attgtttcca cgctagaaga atcgtcaaat      3420
     gaatccgtcc taacagaaga gcagattatg ctgattgagg aggttaaaac gaaatttctt      3480
     ccagctcgag agggtagtct cacactaacc cctttagccg aacacaagat tgttctgaaa      3540
     gaggagtgga ggaatcagcc acctgtccgg cagtttccgt attgtatgtc gccmaaaacg      3600
     caagaaatgg ttgccataga actccaaagg ctgttggact tagggataat cgagaggagt      3660
     agctcggatt ggtccttgaa ctgcgttcca gtaattaaac caaataaggt gaggttgtgc      3720
     ttagacgcgc gcaaaatcaa tgagcgaact gtgcgtgatg cttacccttt gcctcaccct      3780
     ggacgcatct taggwcaact tccgaaagct aaatttcttt ccacaatcga cctttcagag      3840
     gctttcttgc aagtccctct agacccacaa tcgaggaagt acacagcgtt cagtgtgcag      3900
     ggcaaagggt tgttccagta caccaggatg cctttcggcc tcataaacag tcctgccaca      3960
     ctggctcggc tgatggattc tgttttaggt catggtgtac tggaaccgta cgtttttgta      4020
     tacctcgacg acatcgtcgt ggtgacagaa acgttcgagc atcatgtgca gctcctcact      4080
     gaaattgcgc gtcgtctaag ccaagcaaac ctaagcatca atctggagaa gtcccgcttc      4140
     gtagtctctg aggtcccatt cctaggatat ctgttgagca caaacggtct gcggacaaat      4200
     cccgataaaa tacgcccaat cgtagaatac gagcggccaa caacaataac gaaactccgg      4260
     agattcctag gaatggtgaa ctattaccgg agattcatag cagactttag cggagtgact      4320
     gctccgttga gcgatctcct aaaaacccaa tccaagatga tccactggaa tgattckgca      4380
     gaagaatcct tctgcaggat caaagagctt ttaatctctt ctcccatact gggaagccct      4440
     gactttacga gggaatttca aattcaaacc gatgcaagtg acgtcgctgt agcgggaatc      4500
     ttgacgcagc agcatgagga aggagagcga gtgatagcgt acttctcaca caaactcacc      4560
     acgcctcaga aaaactatca cgctgcagag aaggaagcgc tggctgcaat tctggccatt      4620
     gacgccttcc gggggtatat agaaggttac catttcaccc tggttactga ctcttctgcg      4680
     ctgactcata tcttgaagac caagtggaaa gtaggatcta gatgcagtcg atggtcatta      4740
     aatttgcaac aattcgatat gaccgtggtc catcgaaagg gcaaagataa tgttgtcgcc      4800
     gacgctctat ccaggagtgt ggtagctgcc gtagactcct cagattcctg gtattccact      4860
     atggtcagca aggtattgag tcagccagat gagtacgtag acttcagggt ggaaaatgat      4920
     cgccttttca aattcatttc cgcgtctgat atcccagggg attcgcggtt tgaatggaaa      4980
     gcagtccctc taaaatcgga gatcgccggt attctccatg aatgccatga ttcctgcctt      5040
     catcctggct acgagaggac gctttcgcga attcgacagc ggtactactg gccgaaaatg      5100
     gctggagaaa ttcgacacta cgttcagcaa tgtactacgt gtaaggaagt caagccggcc      5160
     tcgcgaccag tagttcctga aatgggcaat atgagaatcg ccactcgtcc atggcaaatt      5220
     atttctgccg actacgtggg accacttccg cgtagtcgta gaggaaacca attcctactg      5280
     gttgtagctg actacttttc caagtgggtt ttacttcaac cagtacgaag cataagcagt      5340
     tcgagtctct gttccatcct taaagagcaa tggttcctcc gaaactcagc acccgaagtg      5400
     atcatcaccg ataacggtag ttgcttcacg tcaaaagatt tcaaagaatt gctgaaccag      5460
     tttcagacag cacattggct taattctaga taccattccc aggccaatcc tgtggaaagg      5520
     gtcaaccgta cgatcaatgc tgccattcgt acgtacgtaa aggaggacca aaggctctgg      5580
     gacactcgaa ctgctgagat agaagtgctt ctcaatacaa gcctgcatgc ctcaaccggt      5640
     ttcacaccgt attttataac tcatgggcat gagctatcag aatcaggagc ggatcacaaa      5700
     ctagcacgtc acgaagaaaa tttaacagcc gaagagcaaa aggagcgaag aaagagaatg      5760
     ttcactcgaa tatacgaaat agttagccaa aaccttgaaa aggctcatca aacatcccgc      5820
     gaacactaca acttgcgtca tcaccgattc tcaaaatcat ttgttgaggg tcaactcgta      5880
     tatcgcaaaa acatgaagct ttctaatgct gccgaaaaat acaacgcgaa atacggccca      5940
     caatttcttc cctgtcgcgt taaaaagaaa attggctcgt cgtcatatga cttggaggac      6000
     ttgaacggaa aacctcttgg gatttggccg gctgtgcacc ttaaaccagg ataaacagtt      6060
     ttgtcccacc gttgttcgtt ttcgttgctc cgatagtaaa taaacatcca ttcatgttca      6120
     gcttatttat tgccattgaa agctacactt gcataacagt catctcgcca atcatcgctt      6180
     acaccaggag tatacaaaca ttttgaatcc ctttgataag atgccatctg tgcacattag      6240
     aggaaatccg tactgtccaa agggatttca ccgtcaaaat ctaaaaatat aagcagaaaa      6300
     tctaatgatt agaagtatac ttacccgaaa tagttgcaaa ccaagcagaa tcactgtctc      6360
     gtcataagtc tcttgtttat attgtgccgt catcgtagtc gttgagttca ttgacagttc      6420
     tctataaaaa aaaccaaaac aactactagg ggtgtgcaaa attaaagcac gcagccacat      6480
     ccatgtcgga gttccgaatg ggtacacgga aattagaata gcaccattca atgggatttc      6540
     taatttttct cttgcaacag caagcgagtt cattgaaata acgaaatgag tggatgttat      6600
     tcaattaatt ttaactgata gtcatagtca ctctatccta ggagagtgat aatatgacga      6660
     aattagttat agggcgccct accattaatg aactttagct cgtagatcta gcattgataa      6720
     gaagaatgtt cgtgtaaaat ggagtgaatg aatgtgagtg tgaatgatgg gggtttatga      6780
     atgagttaga atgattgaga aaggttgaat gtggtagtat aataagtgtt ctgttgtcca      6840
     aggcgaatct tgtgacagtt gtagttgaaa gagacgatgc agaaagtttg gtctctaaga      6900
     tgataattta aaatcaacca caaaacggtt gaggggagaa tttctaacct gtaattgaac      6960
     tcaacaactg aaatgatggc ctatacatgt agtttattct gacgcaccat gaacaatcta      7020
     acatacgcaa actccacgat cctagcaatg aaaaatttgg caatccacta tcccaccgac      7080
     tttgaccgtt ccctggaaac tgctcgaaac tgaaggtgga caggctcact ccactagatt      7140
     cttacaattc gttggaaaga gctcctctgg ttactacgaa aaatcatcca acgaattgta      7200
     acggaaactg gtggagcagt agtcgcatct gatggacagg ctcactccat tagattctta      7260
     caattagttg gaaagagctc ctctggtttc catgaaaaat cattcaacga attgtaacag      7320
     gaactaatgg agcagtagtc gcatcgaagg ttggcagccc aggttgagaa aaaaaaaaac      7380
     actttgtttt tttttacccc gactccggga agat                                  7414
//
ID   Gypsy-365_AA-LTR repbase;    DNA;    INV; 1791 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-365_;
KW   Gypsy-365_AA-I; Gypsy-365_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1791
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1791
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 224-224 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1791 BP; 575 A; 307 C; 342 G; 567 T; 0 other;
     tgtgaccgtt catttcgggt cacaataaaa tacttggtga gaaagcaagt tagaggttta        60
     gcaacaatat gatgtaatat atgttttgtg ctgtcttaaa aatttaaatg tctaaatgtg       120
     aaataaatgt ctgtctccgc ttcaattagt gtttgagtga cgtttatttt gtatttagta       180
     gtctcttggt tgatgtcttt cagaaaaata tttattttgt ttgtcacctt actccgatcg       240
     tagtttagat ttatttattt atttatttac ctatttattt atttgtttat ttatttattt       300
     atttattcat tcatttatta attagattat ttacattatt tcgattatat atttacatta       360
     ttatttacac agattattta tttacacaga ttatttattt actcagattg tttatttaca       420
     agaatatatt tatttattta tttattcaga atatttattt acattcatat atttgattat       480
     taaattatgc ggaaacaagt agcaggaaat ttgaattttg ttaaggcaaa gcatgcagcc       540
     actttgtcgg agtaagtgtg taatttagta taggatatca accaagcccc ttttagagtg       600
     taagcttttg ccgatcaact gtcatcgttc gtccttcttc gtgtccacgt atgtcatcgt       660
     catcatgatc gtctagacct tgacaatgaa atggaagatc gtcatgaact ataaatagcg       720
     cactcgaaat agggtgcgct ctcttatttt gtacaaagtc cggaggagcg aagacagtga       780
     cggttcgcgg tttagttcgc ctctataact aaccgtagta gtttcgcgta agtgaaggtc       840
     aatggataaa atttaaaact aaatcctaaa tctaaaataa aacttacgga ctaaaaggtg       900
     taattaaaaa cagctaaaac accactgaat taaaacacct aaaaagctaa acagtacgga       960
     tcaattgaga taatcaccac gaacggttga gaatgtgcac cgaatgtttg tgaagttaat      1020
     ctcaaccgcg ttaatatctc tttgatcacc aacgtacgaa aaatcaagcg agcgagtggt      1080
     gaaagacttt taatgaacaa tagctgcagt gaagaattgt ggtcgagccg atagaaaaag      1140
     tggtgtttcg caaagactga actgtcgtgc tcaaaatggt gctagctcgc ttggaaaaga      1200
     ccacacagtg aagtgcgcgc gcgattggta ccgctccccg gactcggaac tgtggccccc      1260
     gttacattgg ccaaaccgtc ggtaaaccgt gaagattccc ttgccaagtg tgggaaaata      1320
     agaataggaa gttctaattc aaattggagt aagagtgaaa gaaggagaag aagaagaata      1380
     agaggaagaa gcaagaagaa gacgatccag caagaagaag aagatccccc ccccctacga      1440
     ggttccagca tgtcgaccat cacatcaaac ggccgcaacg gtgagctccc aaacttgtaa      1500
     aaaatgtaaa taaaacgaaa ttagtgcacg aaaattacat aacattagct tttttttaaa      1560
     taaaatgtat ggcctgctaa accctaactt ttgttcttag tttactccat ttagagaaaa      1620
     tcttgtttcc gccattttgt tattgtattg tccgctttgt caccaagtat aaaaggtaag      1680
     attgtccggg agaaaactat tgtgaacgac cctgaaaaag tgtgttgata acccctgttg      1740
     cattgatttc ccttgaagca ggggttccca ccacgcttac agcacgtatc a               1791
//
ID   Gypsy-366_AA-I repbase;    DNA;    INV; 6574 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-366_;
KW   Gypsy-366_AA-I; Gypsy-366_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6574
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6574
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (15-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6574 BP; 1914 A; 1306 C; 1559 G; 1795 T; 0 other;
     atggcgcaaa ccgcgctccc aaaaagtgag tatagtgcta aaaagtgttc aaacgactga        60
     gtttcggtga tgtaaaacat gtagctttgg cttttttcgc aaaaaaaaaa aaaatggcga       120
     ctgcaatatg aaatacaata tgaaaaaaat ggcgtctgaa atatagaata taagctcatt       180
     aattggtgac tgttaatcat ggaatgtgat aagaaatgga gctttagtgt aaaagggaga       240
     agagccagat gagagtttga gcggcacctg ttgctgtgtt agctacattt ttttcttaac       300
     cgctgctgtg atagtgataa ctacgaagaa ataccaaaag acgctcgtgc gcgtccacat       360
     aattgccact tcagtgaaaa aaaaatcaga agccctgggt aggcacaaac acaactcgac       420
     agttctagta gacgcttgtg tatgcttgat ggataatgga cgctcgtgtg cgtcgaattt       480
     aattaccttg tgcgaagacg aattcagtgc ctctgagagg gctttcagga aattcaaaaa       540
     gacacttgtg tgtgtaccat gtatctgtta ttttttgttc ttgctcccct gggagggaca       600
     ttttgcctta ttaaacgctc gtgtgcgttg aatttaattt accttctgag aaggcggatt       660
     cagtgcctct gtgagggctt tgaagaaatc catgtagggc tttgaaaaaa cccatgtaaa       720
     cgcttgtgtg cgtcgaattt aattaccttg tgcgaagacg aattcagtgc ctctgagagg       780
     gctttcagga aattcaaaaa gacacttgtg tgtaccatgt atctgttatt ttttgttctt       840
     gctcccctgg gagggacgtt ttgccttatt aaacgctcgt gtgcgttaag tttaatttac       900
     cttctgtagt ttgtttgttc ctgttcccct gggagggacg tgttatctta cacaacgctt       960
     gtgtgcgttg aatttctttt ctttctgtga aggctgtttc agtgcctctg agagggcttt      1020
     caggaaattc aaatagacac ttgtgtgtgt gccatatatt tttattcttg ctctcctgag      1080
     agggtcgtct agccttatta gacgcatgtt tgcgttgaat ttaattacct tctacgaagg      1140
     cggattcagt gtctatgtga agacttttag aaagtctaca ataaaaatag atacgtgttt      1200
     gttccatacc ttattggacg cttgtatgtg ttgaatttat tttcgttttg cgaaggctga      1260
     ttcagtgtct ctgtgaaggc taagaagaaa tccacagtat gaaaagacac ttgtatgtgt      1320
     gttcgatata tcagttttaa ttttctgttc tggcccttta tcttattaga cgcttgtgtg      1380
     cgttgaattt aattaccttc tgcgaaggcg gattcagtat ctatgtgaag gctttgagaa      1440
     agtcttaaat acaaatagac acctgtgtgt ttcatacctt attagacgct cgtatgtgtt      1500
     gaatttattt tcgttttgtg aaggctcagt gtctctgcga ttgctgtgaa gaaatccaca      1560
     atacgaatag acacttgtat gtgtgttcaa tatatcagtt ttaattttat gttctgacct      1620
     tttttcgtat ttatggggat agaaaatttt agaacatgtg ttgccatgcc attatgttaa      1680
     agttatgttt tcaatacgta aacccgcaaa taatgttggt agacagaaaa attttataaa      1740
     tgaatttata agacagcata tatgaacttt caaatcacaa catccataaa taaataaaag      1800
     atacgttaac atttgcacgg caagtaacga tattccacga taccattttt ctaggaaacc      1860
     cattcgatct acaaaaaaga gttggaaaag gctctggaag cacaaataaa gcgaagttct      1920
     gacctatccg caaagttgaa agaagttcgt gctgacaaca agcatcttcg cgaatcaaag      1980
     tctcgtttgg acgtagatgt taatgatatg cccggacact caactatgcg cgatgatttt      2040
     acaagaaacc acagcaactt gctgctaaca tcatctatga acacgctttc ggttgcttcg      2100
     ctaaacatcg cggaatgcaa accagcagag aacgaggaag atatcgatag gaagtctttt      2160
     gagacttgga aggaacttct tgaggcctcc atggacctta ttggagtaac cgacgaagtt      2220
     actaaaatga acgtgtttaa ggtaaaagca ggtcccaaat tgctggaggt cctagatggg      2280
     acccctttgc aaaccgtccc agaagtatct tctgcaccat attcgaacgc gatgaagcga      2340
     ctgaaggatt ttttcggctc acgcgagtat aacctcatgc aacgtcagaa attgcgagcg      2400
     atgttgcagt tttccaacga atccgacaca agatacgtga aaagagtaat cgctgcggca      2460
     aaattgtgcg acttcgacgg cgataaactg tcggagagtg tagccgaggt tattcagctg      2520
     catgccctca acataaaagt gcgcgaagct ggtcgtaagt tattgcgaaa gggaggttca      2580
     ttgccagaac tagttgataa aattctcggt tacgagttgg acaaaaagaa tgaggagatt      2640
     tttgcaaaaa cccacccacc cgcagtggag gcaatggtag cagctgtaac acatgggcag      2700
     caagggacaa gttaccagcg tctgaactat caaggtgggt cctttagagg gcttcgaggc      2760
     aagaacagcg gatttccagg acgtccaggg gtctggcaga acttccgagg taacaacagt      2820
     taccgtaacc gaaacgatgc aagaaccggc gctgagcgtg gtgttgaagg cgtcccatgt      2880
     tggcggtgta ccagccgttt tcatacacca aacaactgtc atgctattca gaaggtgtgc      2940
     cgaaactgcc agatcgtggg gcatatcgaa cgggcctgcc gtacaatgcc agttccgaaa      3000
     gcaccgaaac gccgaaccag cgacgatgga gagagctcaa agccgaagaa gatagccatc      3060
     gtgtcaaagg aagaaagcga gagccaggaa accgatactg taagtgatta ttcaacctaa      3120
     actaatcgac atgctggaca gttagttgcc gtccgccagt tatcttcttt ttatgttaat      3180
     tttacctgtt ataaatgaat tcgaataaag gcaggaatag gttgcttata tgttcaatca      3240
     ttttattacc tcgaattgat attattgata ttaggagaaa agttttgctt tgccaagcgt      3300
     ttatgagggt ttaactagtt gactaacata cattaatggt tattttcaga gcgttgagca      3360
     agaggccatg ttcgtcaaca gatgttatga ttgggacaag caagaaggaa caattgtcgc      3420
     tcgtattgct aacgtgtcgg tgaaattcct aattgactcc ggcgctgaag tcaatacgat      3480
     tgatgagata attttcacga gactgatgag caacgagcat tccaaagcac aactattttg      3540
     tgttcaaagt gggtccgaga gacccctacg agcatatgct agcccgggtg agattactgt      3600
     tgtggcaacg tttgtgaccg agctgttcgt ttccgaagat cgacctcgtt ttttcgagaa      3660
     attttacgtt ataagtaacg ccaaatcttt attgggcaaa gaaacagcac tccgttacag      3720
     cgtccttcac gttgggctaa gcgtacctat tcggaacaca gtatctatta atagtgcctt      3780
     cgacgatttt cctggtgaga ttctggtaat tgacactccc gatgagttcc cgaagtttaa      3840
     ccttgctcct gtggtgttga tgtatgataa gagtaaacca ccatctcgta acatcttcac      3900
     gaacattccc ttgccattcc gtggggaagc acaacgaaga ctgggcgatc tcttaagttc      3960
     tgggataata gaacgtgtga cggattccat ggataggtct ttctgctcct cgttgttagt      4020
     cgtgcctaaa ggcaaggacg atatccggct ggtggtagac cttagagggc cgaataagtg      4080
     cataatacgt actcctttca gaatgcctac gctggaagaa atactttccg aacttcatgg      4140
     tgccaagtgg ttttccacta ttgatttaac cagcgctttc tttcacgtag agatagctga      4200
     agaatcgcgt catttgacca atttttttgc gggtgacgct acgtaccgtt tcaaacgatt      4260
     gccctttggg ctttgcaatg ctcctgatat cttccaggaa gcattgcaga caaaagttct      4320
     tgctggatgc cgcggtcaaa aatgctatct ggacgatata atagttcacg gagcgacaaa      4380
     ggcagagcac gatgaaaact tgaacgctgt gcttcgtcga cttcatgaac acaatgtgcg      4440
     aatcaacatg gacaaatgcg taattgggca aaataaagtt aagttcgttg gattttcaat      4500
     gtccgatgaa ggcctgcgcg tggaggatca aaaattaaga gcagttcggg aattccgtag      4560
     gccagagact gtgcatgaag ttaagagttt tcttggcttc atgaattttt cggagcggtt      4620
     tatttatatg cgagcagata aaaccaaaca tttgagagat ctagccaaat ctgattcgtt      4680
     ttattggtcc tcggaagaag aagacgaatt catgttcctg aagcacgaag cactgaagtc      4740
     gatttcacgg ctcggatatt ttcatcccaa ggacgcgaca gaactttatg tggacgcttc      4800
     acctgtaggt ttaggcgcag ttttggtcca gttcgactcg aatgaaacgc cccgaatcat      4860
     ttcatgtgct tccaaagcac ttacacaggc agaaaggaag tatcctcaaa cccagaggga      4920
     ggcgttggcg atcgtatggg gggtggaacg gttttcgttt tatctgactg gaaaatcgtt      4980
     tgccatacga acggactccg aagcaaacga gttcattttt ggcgaaggac atcgaacaag      5040
     taaacgagca gtgactaggg cggagtcatg ggcactacgg cttcaagctt ttaactttgt      5100
     tgtaaagcgt atacctggtc acttgaatgt agcagatgcc ctgtctcgtc taatcgctca      5160
     atcccgccaa gatgaaccgt ttgatgaaga taatgacaag catcttctct acgccataga      5220
     aggcggtatg atgagcgtca cgtggaaaga tatagaggaa gcttcagaaa acgattcaga      5280
     gcttcttgcg gtgaaattgt ccattggaac ccgatgctgg ccagaaaatc tccgaagatt      5340
     cgaggccgaa tcaaaatcat tgcgttcgct aggatcaatg attttcaaag acgacaaggt      5400
     tgtaccgcca actgaattac gaacggaaat aatgcgtaca gctcatcaag gtcacatagg      5460
     atgcgcggct atgaaacgta taatgcggga gtacttttgg tggccaaata tgagtaagga      5520
     cgtagagtta ttcgtcaagg ggtgcacaac ctgtctagtt atctctagaa agaatccgcc      5580
     tactccgtta acgagccgca ctttaccaga tggaccttgg caagtgctcc agatcgattt      5640
     tttgtcagta ccaggatgcg ggtccggcga attgttagtt ttagtcgata cctattcaag      5700
     gtacatcgct gtaacagaaa tgaaagccac tgatgcaaag agcaccaaca tggctctaaa      5760
     tcgcatcttc ttcacttggg gtttgccact gaccatgcag agtgacaatg gccctccttt      5820
     tcagagcagt gagtttatta aaacgtggga agaaaagggt gtgaaaatca aaaaatcgat      5880
     tcctctgcac ccacagtcca acggcgctgt cgagcggcaa aaccagggca tcatcaaagc      5940
     cttggcaggt gccaaacaag atggttgcaa ctggaaggat gctttacaat catacgtaca      6000
     catccataat actatcaagc cgcatgctcg ccttggcgta acacccttcg agttactagt      6060
     tgggtggaga taccgtggct tctttcctac tttgtgggag tctaagctgc acaaggcatt      6120
     agatagatca gacgtgagag atcaggatgc agtatcaaag ctagtaagta agcaatacgc      6180
     tgacaaccgt cgaggggcca aagactctga catagtggtc ggagataagg tagtacttct      6240
     aaccccaaag aagaataaga cggacccatc cttctctacc gagcaatata ccgtgctgac      6300
     acgccaagga gcaaagatag tcattcaaag cgagcaagga gtacagtatg cgcggaatgt      6360
     tgcagatgtt aaacgggctc caaaattgag cttttcgaaa gagaacgatt caaaatcagg      6420
     tacacaggat ccacgcgaag aaaagtctgt acagtcaact aatcagacaa cagatgattc      6480
     cgaagaaagg ccgagaagga caattaggaa accagagaga cttaagaata tgtttttgta      6540
     ccacatttat cagtagagta ggagaggggg tgaa                                  6574
//
ID   Gypsy-366_AA-LTR repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-366_;
KW   Gypsy-366_AA-I; Gypsy-366_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-509
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-509
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 225-225 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 509 BP; 171 A; 84 C; 127 G; 126 T; 1 other;
     tgtagggaaa cagataagca aaataaaata aatgaattaa tacatatgaa ttaaacagat        60
     aatatcatgt agaaggggat caaataaaca aaataaacta aatgagccaa aacagatcat       120
     ttgtttcagt gcatcacaaa tctcaactgc agawgtatgt ataacggttc ttcgttcttt       180
     ccataaaccg tgtccgtacg atggtaggca cctcccggaa tggatcgagt gtgtattcga       240
     gattgttcgg cactagcagc ttaacacgag ctcattgatc ggctggcgag atacacatat       300
     gtatcaaggg atacgggtgt gtaagtgtgg gaatgcatgg agttagcgaa gcttggagag       360
     gtagatggat gatgaaatag agacaggtca ggcagttttt ggagatacgt taacgtgaaa       420
     gcacgtaatt agctctcgtc tccgttgcgc atgaatagtg gtttggccga aaaatcgaaa       480
     ctcaccaagg atgaacggcg gattcgaca                                         509
//
ID   Gypsy-367_AA-I repbase;    DNA;    INV; 7463 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-367_;
KW   Gypsy-367_AA-I; Gypsy-367_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7463
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7463
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 190-190 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 7463 BP; 2329 A; 1612 C; 1465 G; 2023 T; 34 other;
     aattggcgcc caacgtaaat tagtgtgtga acaaaaaagt ttctaatata tccaaaatta        60
     gaaccttttt ttgaattgtg ctccgggaga atccgaaatc gaaaatttca atttcgttcc       120
     aatttctttc ataattagaa ttactaaatt gtgctttcaa attgcaaaac cgmwtgtgct       180
     agaacaaaac catttcggat gatgataata gctttttttt cctttgttca ttgaacaatt       240
     aagtgtcatt ctatagctca ttgtctcagt cctgaataga attattttca tttaaataac       300
     gtgtgaattg attttgtatt gaatagattt ttttttgttg aattgaattt cttttgtgaa       360
     ttgaattgaa taccttttgt gaaatatttc ttttgtgaat tacttctttt atttaaacat       420
     agtgaatttg ctttaaatat tttgtgaatt atacgtatac tagccatggc cggtacgaat       480
     gttacgcaag ctatagaaat gattctaggg tggtaccacg acatccgagt ggaccattta       540
     gaaaatgaag agctcttgtg tgaattatca atgcgggcta tagtaattcg agacgatccg       600
     tcgttctcac gcaggcgaag aagtttacga gaacatctaa aattagaaaa ggcggagaag       660
     agatttttgg aagcagttgt gggtgaaaac aaagttgagg aaataagtgt ttgcgaaaaa       720
     aagtttttgg aaataagtga aacggtgaaa cagcacgatc gcaccctaag ggcgaagtgt       780
     aaaacgaggt tcttgcatta cggtcataga gtgtatcagc tgatgaaacg tgtggatatt       840
     accgcagaag aaagcggatt tttgaaatgt cttcttgtgg acattgttga ggttttaatt       900
     aaagaatttt atggggataa tttgaacctt gtaaataatc agcaggaaat tgacactgaa       960
     caggcattac ttaatttatt tgaagttaac caagagtccc ttgatccttc aggagctctt      1020
     atcagtgatg tgagagtagg aaatagtcaa tataacccac cacaaatatc gtctcaagag      1080
     cttgcacaat ctcaattact aatttcttgc agtccagaag tgaaggcaat aattgaatcg      1140
     ttgcaagctc gcataaaaga gctcgaaatt gcaatgggtc aaagagccac cctacccaca      1200
     cctcaatcac aagcttctgt cgcagatcca agcggtttgt ttgctcatcc ccctcgaaca      1260
     atagactcga acgcgataac aaattccgat cgccacaaga atmaacattc ggttggtttt      1320
     gccgatttac caccaacagt gccatccaat ccgtataaaa atgtgccgta tttttctaat      1380
     gccgctcaat cgattcccca aatacccact gcttcttcaa gccgmtttac atcgaacccg      1440
     caatgcacct cacagccgtg gttcaatagt agtgtgccaa ctaacacaca acaatcatct      1500
     actacgtacc ccaatcagca aaatacacat tctcatcagc ctcaaatacc aatcccatac      1560
     tcaccgtacc cccctcacta tacattgcag ccacctaatc catcgcgaca tactttacct      1620
     gtttctcaat ggaagatcag caaatacgac ggtgcagatc aagggctcaa gcttaacgaa      1680
     tttcttgaaa twgtacaaac cttctcgttg gcagagcatg tttcagaagt tgagttattt      1740
     gaatctgccg ttcacctgtt tacaggacca gcgctaaaat ggtatatgac catgcgctcc      1800
     acaggacgat taattaattg ggaccatctg gtgcttgaat tgaaaagaac cttcatgcat      1860
     ccmgatttag acgcgcttat aaaaatgaaa atatatcagc gacgtcagca aagaaacgag      1920
     tcgttccatg agttttatta tgaaatggaa cgattgtttc gaactatgtg cattcaaatt      1980
     ccggagtacg aaaaagtaca aattttactc cagaatatta gaattgatta cagaaagcaa      2040
     ttaactttcc taccgatcac tgatctaccc acattaattg ctgccggcca gaaaattgat      2100
     gcgcttaatt tctccgccta taataaggtg tttgggattg agaaatccgt aaatgctgtc      2160
     agtcagacaa agcccaagaa aaactcagca ttgagccaac aaaatcaatc taattcgtca      2220
     ccamcaaccc accccaaccc wcaaaaatck gcccaccaat cccaggcaca aattcaatcc      2280
     aaaaaccccc cacaagcatc tgctcgaaat caagttcaac aaagaaaccg atcgaccctt      2340
     gaaaatctca ttgattcata ccaaccccct ccggataata catgcttcaa ttgtggaaat      2400
     tacggacatt ctttgagaga atgtcgtctc ccgagagcgg tactttgcga gaattgtggc      2460
     ttccgtggat acccgtttaa caattgtccc tattgcacaa aaaacgccat gacagcgaac      2520
     gaaaaacgca gttcgctgaa ccgttaaacg cgtatcatac tcaaagctct tctcctacat      2580
     ttttcatcaa agccaccgct gatctctatt ctgaagaacc aatcacatgt ttaattactt      2640
     acccgtatcc caatgataat cgcccataca ccaacatatg tatatatgag cacaaaatcc      2700
     gtgcgctwct ggatagtggt agcaacctca ccttaattaa cgacagtgta tactcttcmc      2760
     taaatcctcg caaaatcaaa ccgmttcaaa atcccattaa gttgcgcacc gctggtggcg      2820
     aaccactgga gattcttggt caaatttatt tgccatttac tttcaatggc gtaaccaaaa      2880
     tcattccgac tctggttgtt ccaaaattag ccatccgttg catttgtggc atggattttt      2940
     gggccaaatt taacattcaa ccaacagtcg gagaatgtgc cctaattgat gattttgggg      3000
     aagaagaaac cacacagcca acgtccwctt ctattcttac gattgaagag caacgggtaa      3060
     ttcaggcaac aaaaaaacta ttcctgccag cccgcaaggg gcaattgtca ttaaccccgc      3120
     taactgagca tcgtatcgaa attaaggaag aatggaaaga taaacccccg gtacgtcagt      3180
     ttccctacgt catgtcgcca aaaacattgg gtttggtggg cactgaactg caacgtctgc      3240
     ttgacackgg gataattgaa cgtagcaact cttcgtggtc actcaattgc gtccccgtaa      3300
     taaagccaca taaagttcgc ctctgcttag atgcccgtaa aataaacgag cgcactgtac      3360
     gagatgctta tcccttgccg cacccctgtc gtatactagg ccaacttccg aaagccaact      3420
     atctatcaac aatagatctt tcggaagctt tcctccaaat acctcttcat ccggcctcga      3480
     ggaagtatac ggcattcagt gtgcaaggca agggattgtt ccaatacacc cgtatgcctt      3540
     ttggtctggt caatagtccc gccaccctgg caaggctaat ggaccacgtg ctaggccacg      3600
     gtgtattgga accgtatgtc tttgtctacc tcgacgatat cgtcgtggtg acggagacat      3660
     tcgagcatca cgtgcagcta ctgcgagaaa ttgcacgcag gctgagagag gcaaacttgt      3720
     ccattaattt ggaaaagtcg caattcggcg tcccagaaat accattccta gggtacctcc      3780
     ttagtaccca aggccttcga gctaaccctg agaaaactcg acccatmatt gagtacgaga      3840
     gacccaattc gattacaaaa ctaaggagat ttctaggaat ggtaaactat taccgtcggt      3900
     ttatttcgga ctttagcgag atcacagcgg cgcttactga tctcctaaaa acgaaatcta      3960
     aaatcattaa gtggactgat gaggcagaaa aatccttctg tgcaattaaa gaacgcctgg      4020
     tgagtgctcc tatattaggt agtccagatt ttacgaaaga atttaccatc caaacagatg      4080
     ccagcgacgt cgctgtagct gctgtcttga cacagaagca agaggatggc gagagagtaa      4140
     tctcttatta ttctcacaaa ttaacaacgc cccaacgaaa ttaccatgcc gctgagaaag      4200
     aggccctagc mgcattgctg gctattgacc acttccgtgg atacattgag ggctaccatt      4260
     tcaagctcat cacagattca tctgcgttga cacatatcct caataccaaa tggaaggtag      4320
     ggtcaaggtg cagtcgatgg agcttgaatc tacagcaatt cgacatgtct gtggttcata      4380
     gaaagggtaa ggacaatatt gtsccagatg csttgtcgag aagtgtagck gtagtcctag      4440
     atccatctac tgcatcttgg catacctcct tggttgaaaa cgttttgagc aacccagatg      4500
     actatgccga ctttcgctta gaagacggta aactgatgaa attcgttatt gcgaagaacg      4560
     agccttacga ttcccgtttt gaatggaaaa ttgttccatc acctgacgag atttccgtca      4620
     tattgaaaga aaatcacgat ggcacgtttc atcagggcta tgagagaacg ctggctcgwa      4680
     tccaaaaacg attttattgg cctaaaatgg gctcaaccat acgatcgtac attcaggcgt      4740
     gcactacgtg caaagaaatt aaagccccgt tcgtagcagt tacacccgag atgggaaaaa      4800
     tgcgtcaagc atcttatcca tggcaaatca tttcaattga tttcgtcgga cccctcccac      4860
     gcagtagaaa aggaaatcaa caccttttgg tgataaccga ctacttctcg aagtgggtga      4920
     tgttacatcc cgtgcggaaa ttagatagct cagccatgtg tggggttctg aaggaacagt      4980
     ggttctaccg gaactccgtg ccwgaaataa ttatcacgga caacggtagc acatttatcg      5040
     cgaaagtgtt caaagacctg cttgaccaat ttggaatcac gcattggctc aattcgcggt      5100
     atcattcaca ggcgaatccc gtcgagcgag tgaaccgcac cataaacact gctatacgaa      5160
     cctatgttcg tgaggatcag cgtttatggg ataccaaaat cgccgagatt gaattgattt      5220
     taaacaccac taaacacact tcaacgggct tcacgcccta tttcattaca catggcttcg      5280
     agctgtctga aaagggtgaa gatcatcgtc ttttacgcca cgatcaactt ctttccgacg      5340
     acgaacggga agaacggcgt aaacaaactc tctctaaaat atacgacatc gttaaaagta      5400
     aattagctaa ggcacatgaa tcgtcmacaa aacattataa tctacgcagc cgtcgtttcg      5460
     cwaaatcatt ctccgtcggc cagctggttt tcaggagaaa catgaaacaa tcgagcgctg      5520
     cggataacta caattcaaag tacggaccgc agtatctccc ttgtaaggtc aaggctaaga      5580
     tagggacgtc atcgtatgat cttgaagatc tcacgggtaa atcactcggg gtgtggccgg      5640
     caattcatct gaagccggga tagataggaa taaaacatgt tctaccagct cactttattt      5700
     ccaaaaggct cagctttgtt gacctaaaaa tatacaaagt aaacaaaact tacatctgcg      5760
     catacgtttt gtggcaatcg atgcgtatca ccttaacctt caccctcaaa ctgctgttaa      5820
     aaccgtgaaa acagtgcaaa actttcactg ttcacgatag tcttctcatt cgtcaaaaac      5880
     ataaacawgc tttgacatct cacacccaca caagagcctt ctttatttag tcgacataca      5940
     cagggctgag taaaaggctt tttcaacctg gtatggtcga cattcgstgt agtcatcaaa      6000
     agcmmctcat gttgcttgca attttttctc gcatgcgaga gagtaaagaa gcggcattga      6060
     gatcggttca ttaaatttaa gtttcgcmga aagatcacca gctctcttwg aataagagac      6120
     gctagwgtga tctaaggaac aaccacawat taagggcgcc ctagaatcat gttttagtag      6180
     taataaagta ggatgaatgt gattactgaa tgggaaagtg tgaatgaata actggaaaat      6240
     tatgaatggg aatgaktgga aatgaaatga ttgagtggct tgwtgaatgt ttgttgaatg      6300
     agatgtgtga atgtgagtat gtgaaaataa aatctggtcc aagasaaatc ttgtgacgtc      6360
     attaaataaa aaaaagagaa gtaatcattg tttttttttt ctcatttagt gttagtaaat      6420
     tagttctaag ttattttgtc aaccaatgtt gacaggaaaa taattaattt aggccttgtt      6480
     cagtgggttc tgtgagtggc aaaatgcgag cttttctgac gaaatatggt tttgtaattt      6540
     ctagcatttc aattgcagtt tgtagatcac aatttaataa ttctaattaa tcctcgggac      6600
     aaatcacctg tccagatcat ggcgacatag aagtacgtat tcaactagat agtgagcctc      6660
     actatttcaa attcacgtaa ttaagagcaa cagcacttga cgctcaggaa caatcattgc      6720
     tttcaattaa attgaatttg aaatagcaga gaactactag ttgaataggt cttcatagtt      6780
     gaccaaatct cgacacgcag atccctctac ctaaaagaaa gaccttggaa gctccggctc      6840
     ttttccttca agcgaccaga aaggattgct atatttctgt tcatagcagg ctcactcttc      6900
     caaattcaag tgattttgag gaacagcact tgccgcaaag gaacaatcat tgctccaaat      6960
     caatatgaat ttcgaagaga agagaactat gtacagaata aacggcagtt ttatccacat      7020
     agtagctcga agaaaaaaaa atcggatatt gtaagttttg acaaagacaa cttccgcgac      7080
     aaccaggctc actcttccaa ttttatatga ttcctcggaa cagcacttgc cgtccaggat      7140
     caatcattgc gaagaatcaa ctaaaattgg cagagcagag agttgtgtag cgaaacttat      7200
     agttggacgc ctgggaatcc tatagtcgga ggcagagaac aaaaaccgga ttcatgcaaa      7260
     agcaggctca ttcttccaaa tttaggtgat ttcgagcaac agcacttgcc gcataggatc      7320
     aatcattgct ccaaatcaat taaatctgga agaagagaga acttttgctt gaactttttt      7380
     ttcgtaatct gataactcga ttatagagag ctccataata ataaaaaaaa actttgtttt      7440
     tttttcaccc gatccgggat aat                                              7463
//
ID   Gypsy-367_AA-LTR repbase;    DNA;    INV; 1227 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 25.01, Created)
DT   15-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-367_;
KW   Gypsy-367_AA-I; Gypsy-367_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 226-226 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1227 BP; 376 A; 239 C; 194 G; 418 T; 0 other;
     tgttacctat gtgataggtc acaatcatgc atttgccttt tttgtatttt tcttttttcg        60
     ttttgttata tttttttctt tttttgtaaa tatttatact ttgtttatat tttcctaatt       120
     ttgtaaatac tcgtaaattg gtaaataatt atgctttaac cctagtttaa atgtaaataa       180
     cctaatatgt aaatataatc ctttttcctc tatccttcga taccagttac ccataattaa       240
     atgagttaaa tagaaaaatg taatgaattt gtaaataaaa aaataaatta aatttgaatt       300
     tgaaatcctt ccaaataaac ccctggtatc ccaccatcaa aatccttccc aaccatatat       360
     gcactgatgc atcatggcgc ccactaccaa ctgtgcgaag acaaatccct cccgggaaat       420
     gttctacgat ttggttttgc tgcatcatca agtcctataa aaaggatatg caggcccagg       480
     aaatgatctt tttcggtaac aaaattccga cagtttaaat cgtccgatat tttaaacttt       540
     ccaaaccctt aggtacaaaa ttttaagtga atcgcgagtg gaagacatct gtaccccacc       600
     gcagctcaaa atcggaagtg atagtgtcaa gtgccctact agtgatcctg gtgaactact       660
     tgggacgacc gaaccggacg aagctttttt gaagatatcc cagagacgtg aagcgcccac       720
     cacgaccacc aacggccgga catttggtat agccgtcggc aaggaaacca gatcactcgc       780
     cgcccaccga tcgagccgaa aatccctcca caaacgatta accgcaggtg acgtttcaaa       840
     gtgcattcct tcaataattt cctaaatcct aatcctaaat taataaatta tatgtaaatt       900
     tgaaattatt agtggttcag tataattatt tcgagcgcaa ctcctgttcc tccttcttaa       960
     acagtgttaa aattgaattc gcgaagcaag tgtgggttgt gagtccgccc cagtagtgat      1020
     tctcccggat agaccctgag agggctgaag tgtaaatagt ttttaaaaat ttgcctatta      1080
     attagttttt tttatttttg aattgaagtt ttttgaagtt ttttcttagt gttaattttc      1140
     ttagttttct agttttcttt tcatcttctt attattaaaa tttaaatacc caaatgaatt      1200
     tctgagttag tcaagtaaaa agtaaca                                          1227
//
ID   Gypsy-368_AA-I repbase;    DNA;    INV; 6208 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-368_;
KW   Gypsy-368_AA-I; Gypsy-368_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6208
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6208
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 191-191 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6208 BP; 1833 A; 1248 C; 1487 G; 1640 T; 0 other;
     atggcgcaaa ccgcgctccc aaaaagtaag tgtagtgact gaatttaatt gaaacggtat        60
     ttttttgcgt tgttcgaaat agtgaaaagt ttgagaggag aaaaatggtg ttactgtgtg       120
     caaacgtggc aaacaagatg gcggatgagt ttcagaagaa aatattacat tggtgctgcg       180
     atgaacgaaa ttctaagtaa tttgcagtgt ccataatgtg ctttgagaag caatttgctt       240
     aaattaccta atgtagtgtt ttaagtatct cttgagagtt aatttcaata atcgtaaaag       300
     ccacaaaacg ctagcgtgcg ttgaatgcga ttccctagtg tgtgtacagc tgctcaggaa       360
     atatgtggaa aatctgatta acgcttgtgt gcgtcatttt gcctctgtga agacataacc       420
     tgaattcgga cgaaaaatga aagttggttt gtacactttt tccatagctc ccctgggagg       480
     gacgtttccg aaaaatttga aaaatttgct tagaaagtaa aacaaagaaa ctaatcaacg       540
     tctgtgcgcg tcagttttgc ctctgtgagg gctttcttag tgcctctggg aaggcataat       600
     ctgagttcga aagtaaaaac ctctgaaaaa acataacctg aattggaagg agaaaaaaag       660
     gacgctgata tgcactcctt tttttcagct cccctgggag ggacgattca aacagattcc       720
     taaaatcatc ttaagaaaag cttttaacgc ttgtgtgcgt cattttgcct ttgtgtgggc       780
     tgttccagtg cctctggaaa gacaaagctt gaattcggaa gtggaatgga cgctggtgta       840
     ctctcttttg tccagtgctc ttgagaaggc gttcccaatg cattagtttg catattcgga       900
     ttagaaaaat cctggaataa atgtaagttt cccgagagag attccaccaa tgatcgattg       960
     gggataaagg gcaagatgaa cgctagcgcg cgtttaatgg tgcgtaaaca aaaatcgtcg      1020
     ttgtgtgctc cgtcgcgtcg aagttttttc gaatatcatt tcggcgtgaa aaggaaaact      1080
     taaaatgaaa gatggtgtga ttgaatcata tttttttacc ttttggaaga aacatttaaa      1140
     aggttgtttt caatacattg gtgtgtgtat ggacgcttgt gtgcgttaac tcatttaaga      1200
     tagagagctt tgtcgacttt gagactctct atcgactctc tttgagactt ctctatcgga      1260
     tttctgtaat accatttaaa aagcgctcgt gtgcgtctgt tcagtagctg cgtttgttac      1320
     tcgaagcttc cggaagacca cagcgttgta cttttttttt ctcaaggtga acagaagtac      1380
     actattagta tagtttaaat tcaaattaaa tgtactattc atgataatcg aaacaaaata      1440
     aatatatttc tatgcataat ttcaacgagg agtaacgtga tcgaacaaat tgttcttttc      1500
     agaaaatctg ttcggcacac aaaaaaagaa ctagaaaagg ctttggaagc tcaggttaag      1560
     cgcacttctg aactatctgt aaaactgaaa caagtccgcg ctgacaataa acagcttcgt      1620
     gagtcaaaat tacggttcga ggaagactcc ggaagtatgc caagacactc aacaatgcgt      1680
     gaagagtttg cgagcaacca aaacaattca ctgctgttga catcaatgaa cacactttcg      1740
     gttgcatcgc tcagcattcc ggaatgcaaa ccggcagaga acgaagatga catcgaccgg      1800
     aagtctttcg aaacctggaa ggaattattg gaagcgtcca tggatctgat cggagtaagc      1860
     gatgaaatca ctaaaatgaa cgttttgcga gtgaaggccg gtcccaaatt gctggaagtt      1920
     ttggatggaa ctccagcaca aagcgtgccg gatgtttcga ctgctcccta ttcgaatgcc      1980
     ataaaacgat tgaagaactt ttttggatca cgcgaataca atctcgtgca acgacaaaag      2040
     ttaagagcga tgtcacaaat gcctgatgaa accgatacga aatacgtgaa gcgagtgatc      2100
     tctgctgcaa agctttgtga ttttgatgac gataagcaaa cggaaagcgt tgccgaagtg      2160
     atacagttac atgccctcaa cattaaggtt cgcgaagctg cacgtaagct gctgcgaaaa      2220
     gggggatcat tgttggagct tgcagacaaa gttcacggat acgagatgga caagaaaaac      2280
     gaggaaattt ttgcgaagac ccacccatct actacagagg ccgtagtagc agctgtttca      2340
     catggccaac cagggacaag ctaccgtcgt tcgagctatc aaggtggatc gttcaaagga      2400
     tttcgaggta ggaacaatgg ctatccaggg cgagcaggaa actggcagaa cttccgaggt      2460
     agcagcagtt accatcgccg aaacgaaggt acagctgatt ccaatcgtgg tgcaaacgtc      2520
     gcgtgctgga gatgcacaag ccgttttcat tctccggaga actgtcatgc tatccagaaa      2580
     gtttgccgca actgccatac tgttggccac atcgaacgag cctgtcgaac gatgcccgca      2640
     ccgggtgtac ctaagcgcag gatcagcgac gaagcagaaa gctcgactaa accgaagaag      2700
     attgcaatcg tgtcaaagga ggaaaacgaa tctgaggaga caagcgctgt aagtgatttt      2760
     tctacctaaa ttaactgagt tgctgatcaa caatctgacg tctcgcagca ttttttttct      2820
     ctatgttaat tttgcctatg ctttatgaag cgaatttgaa taaacgacag gattatcttg      2880
     ttttttgttg atatatttat tcggctaaaa taaattgaca tcagatgaaa ggttttgctt      2940
     gagcggtcaa cacttgtaag gggtttacta atagcgaact tcatttggtg gttatttaca      3000
     gagcgtggca caggagttag tttccatcaa cagatgctat ggtatggagc aggaaggtaa      3060
     cattctcggc tgtattgcca acgttcccgt agtattttta atcgattccg gcgccgaagt      3120
     taatacgatc gacgaaaatg ttttttcaac cctgatgagc gacgaacatt ccaaggagca      3180
     gttgttttgt gtctcgagtg gttccgacaa gccactccgt gcatatgcta gctcgggtgt      3240
     gatctctgtt gttgggacgt tcgttgctga gctatccatt tccgatgatc gacctcgttt      3300
     ttttgagaaa ttttatgtca ttaaaaatgc taggtcattg ttgggcaagg aaacagcgct      3360
     gcgatacagt gtcctccact taggactcag cgtaccagtt aggaacgtgg tatcgcacaa      3420
     tagctcgttc aataactttc ctggcgaaat cctggcatta gcgacatctg aagagttccc      3480
     aaagtttaac ctaccaccag tggtattatc atacgataaa agtaaaccac cttctcgcaa      3540
     catttttacc aatatcccct tgccgtttcg ggcggaagca cagcgaagac tgggagattt      3600
     gttgttaact ggaataatag aacgtgtaac ggattccatg gatacgtcgt tttgctcttc      3660
     tctactggtc gtgcctaagg gcaaagacga catccgtttg gtagtagacc tcagagggcc      3720
     taataagtgc atcatacgca ctcctttccg aatgccgacg ttggaagaaa ttctgtcaga      3780
     tcttcatggc gctaagtggt tctccactat agatttgacc agcgcattct tccacgtaga      3840
     aattgccgaa gaatcgcgcc acctgactaa tttttttgcg ggcgatgcta catatcgttt      3900
     caagcgattg ccctttggtc tttgcaatgc tcctgacatt ttccaggaag cattgcagac      3960
     aaaggtcctc gcggggtgcc gaggtcagaa atgttacttg gatgatgtca tcgttcacgg      4020
     agcaacaaaa gaggagcacg acgaaaattt gaacgctgtg cttcgtcgac ttcacgaaca      4080
     taatgtacga atcaatatgg aaaagtgtgt gatagggcag aagaaagtta agtttgtagg      4140
     tttttccatg tccgacgagg gcctacgcgt tgaagacgat aaattaaaag caatacgaga      4200
     attccgtaga cccgagtccg tgcacgaagt taaaagtttt ctcggtttta tgaacttttc      4260
     ggagcgattc atttatatgc gagcagataa aactaagcac ctacgcgagt tagccaagtc      4320
     cgattcattt tattggtcta gggctgaaga agacgaattc acgtttctta aactggaagc      4380
     cctaaaatcg atttcccggc ttggatactt caatcacaag gacgagaccg aactattcgt      4440
     ggacgcttca cccgtaggct taggggcggt gttggttcag tttgacgcag aaaaaacacc      4500
     tcgaattatt tcatgtgcat caaaagctct tacgcaggca gaaagcaaat atccacaaac      4560
     tcagcgagag gcgctggcga tcgtgtgggg agtggagcga tttgcgtttt atttgactgg      4620
     aaaatctttc gctattcgca ccgattccga ggcgaacgaa tttatattcg gcgagggaca      4680
     tcgatcaagt aagcgggctg tcacaagagc tgagtcttgg gccttgaggc ttcaagcgtt      4740
     tgatttcgtt gtaaagcgta tacctggtca cttaaacgtg gcagatgctc tgtcacgctt      4800
     aatcgcccaa acccgtcaag acgagccgtt cgatgaagag aacgatagac acctgcttta      4860
     cactctggat ggcggaatga tgagtgttac ttggaaagat attgaagacg cctcagaacg      4920
     agacacagag ctactcacag taaaaatgtc cataggttct aacgtttggc cagaagaact      4980
     tcgtagattc gaggctgaat caaagtcttt gcgttcgcta ggatcgatga tttttaaaga      5040
     tgacaagatt gttgctccag cagaacttcg ttcgaagata atgagtacgg cccaccaggg      5100
     tcacatagga tgtgcggcta tgaagcgtat aatgagggag tacttttggt ggccaaatat      5160
     gagtaaaaat gtagaatcgt tcgttaaagg ctgcgaaact tgtttggcta tttcaagaaa      5220
     aaacccacca actccattga cgaatcgtac gttgcctgac ggaccctggc aagtactgca      5280
     gatcgacttc ttgtctatac caggctgcgg atcaggggaa tttctagtcg tggtcgatac      5340
     ctattcaagg tatatcgctg tagctgaaat gagaggtact gacgcgaaga ataccaacat      5400
     agcgctcaac cgaatcttct ttacttgggg attgcctttg accatacaga gcgacaatgg      5460
     accccctttc caaagcagcg aattcaccac acactgggaa gaaaagggcg tgaaagtcaa      5520
     caaatcaatc ccgctgcacc cacagtctaa cggagctgtg gaacggcaaa accagggcat      5580
     tataaaagcc ctggccggcg ccaaacaaga tggatgcagc tggaaggatt cgttacaatc      5640
     ctatgtacat gcacataaca ctattaagcc gcatgctcgt cttggcataa cacccttcga      5700
     gttattggtt gggtggagat accgaggctt ctttccaaca ttgtgggagt ctaagttgaa      5760
     caaggagtta gaccgatcag atgttcgaga tcaggacgca gtgacaaaat tgactagtaa      5820
     gaaatacgca gatatccatc gaggagcaaa agactctgac ataacggtcg gagacaaagt      5880
     tgtactgtcg attccaaaga agaataagac ggatgcctct ttttctactc aacagtatac      5940
     ggtcttaaca cgccaagggg caaaggtagt agtgcaaagt gagcaaggag tgcaatatgc      6000
     acgtaatgtt gctgatgtaa aacgggctcc aaacggaaag tcctcgtctg aatcgacatt      6060
     agcttcaagt gtacaagatc ccgacgaacc aatcgatgaa tctactggtg agtccgaaga      6120
     aagaccaaag agaacgatca gaaagccaga gagactgaaa aatatgtttt tgtatcacat      6180
     ttatcagtag agtaggagag ggggtgat                                         6208
//
ID   Gypsy-368_AA-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-368_;
KW   Gypsy-368_AA-I; Gypsy-368_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-521
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-521
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 227-227 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 521 BP; 159 A; 102 C; 123 G; 137 T; 0 other;
     tgtaggagat acgatgagcg aattattaaa atatatataa atataaaaga attgttaaaa        60
     taaatatata aaaaaacaga atcatttgtt tcagtgtact ttagatccta acggcatgat       120
     cataacggtt cttcatcctt ctctgtgttt ctatccgaca cacaatgcgc catacacgat       180
     gtgctcgtgc atttgtcgga tggttagagc tcacacatac agaagctcgc cctagagacg       240
     aactgaatgt gtattcgcga ctgttcgtct tccgagttca acccgaacct ggtggttggc       300
     aagcgagata cacaagagtg tggatgagtg tgagagcgaa aaggaggcga tcgacaggca       360
     acgaactatg cggggtatgc cgtcgcttag cagaaaactc atcgtcagtt tgtagacata       420
     cgttgatgtg gacgaacgca ttttgtgtcc gttccactct cagtgctggg aaattaaagt       480
     tcgactgcga atatcccgaa aaatgaacgg cggattcgac a                           521
//
ID   Gypsy-369_AA-I repbase;    DNA;    INV; 6716 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-369_;
KW   Gypsy-369_AA-I; Gypsy-369_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6716
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6716
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 192-192 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6716 BP; 2018 A; 1571 C; 1638 G; 1489 T; 0 other;
     attggcgccc aaccaaaacg agcccaaaat attattactt tgcataataa tattttcaaa        60
     tttgtgggga ttttagtttt tcgtccattt ggctaaattt tcgtgttgaa gatcctttag       120
     acagtatgga tcctttgtac ctcagtgatg aggaacttaa ttatgagttg gctttgcgca       180
     gatgcaacca acctacttct gccacacgca gaatcaaagg aacgcagctt agagcgctga       240
     ttcaaaaaga atttgccgaa aatgtgaaat acacgtcatc cgagcatgca atgccggcag       300
     atgtgaacat tcatcgttgt gaacagcaag tcagacttct gattccaatg attgaaacgg       360
     cacttaaaag acgtaacaca gatttcctaa ttcagtgtcg atctcgtatg attcattatc       420
     gagatcgtct gtcaatcgtg aaacctccgg tagacctgat cgatatgcac gcgtcggtgt       480
     caattcaagt gaagttctta atagaagaca tcagtgacag acttggtgat ccgttgatca       540
     gcgagagtag tcaacaagtg ttaccgccag tggaaggagc gggatcgcta gaatatcaac       600
     agcactacaa cactcttcta tcgccggaaa gggaacaaaa ccagcgtcga atcaacgaac       660
     cacagaagtc aacagcgcaa acgggtgctg taaccaggca aagcaatgaa gggctgaaca       720
     acgatttcat ccgtgcgacg agctcgccga taagacccgg cagaggaaga ggacgcggag       780
     ttgcgatcaa tctctcgcta cctgggcgaa actcatcgca accgagaggc acacctcctc       840
     cggcgtacca tccagctgga ccagaaatag ctcacgatag cacaaccgat cgcctgagag       900
     atgaactact catacagctg ctacaacgag aacaacacac gcaagatcgg caagacgcag       960
     ggagaggtct caaagcagtt cacaactggc cgttcaagtt caagggcgaa aaggacacca      1020
     catctctcaa cacctttctc gacagagtgg aaacattcac acgttcagaa ggcctgtccg      1080
     atgatacgct tctgaagtct atcaaacatc tactactaga cgatgcgttg gactggtatg      1140
     gacgagcgat atcgcagaac ctgttgataa catggacagc cttcaaaaac gagatacgga      1200
     aggaatacct gcccagtagt tacgagcaga tcctcaaatt agaagccatt ttccgattcc      1260
     aagctccgga tgagtccttc gcaaagtact accgtgacat atccgcatta ttccgcttcg      1320
     tacaaccccc aatgagcgaa caggaaaaat tcttcattgt gaagaaaaac atgaatgcgg      1380
     actatgcaac gattgtcacg gcagcgagac cagactcgct gcaagacatg gtggaagtgt      1440
     gcagcagcta tgatgaaaca cgcatgctat taaaccgaca gaaacgagtt ccatttccgc      1500
     agagcagcct gctagaaccg aacttagcaa cgccagcgaa tcgtccaacg ccgttaaatc      1560
     gaggaaatcc gcgattcggg cgagtgcacg cgctgaactc agaggaggat ttgagtcccc      1620
     tagaagcttg cagctgtcaa ccacaaccca acacaagcaa acacgcgaac gtcagcgaga      1680
     atcaaaagaa gtcaccggaa acgcaatctg cagcagaaaa ggacaactgg cagcaacgaa      1740
     ttctggaact gacggagcaa gtgaatgcgc tgaaacttcg acaatataac agggaggaaa      1800
     gaccatatcg cagtcaacat caacaggaac aagagctgcg agaacaccat cagcaaaatc      1860
     ctggcgatca aaggagaact ggtttgatct gttggaattg cgatgaagat gggcaccggt      1920
     tcatggactg cccaaaaccg caagcggtga tgttctgcta ccgttgtggg cataaaggtt      1980
     attcgctgcg caattgtccc acttgtcgaa ctggtttggg aaacgctgct gcggggaacc      2040
     agctatagag ggaaggaaat cctcgcaaaa cttctacaat ccctcacaaa tcccgaaccc      2100
     aaccatgatc aacaccataa tcatcaaccc cgaagacgac gaacgcccgc atgcagaaat      2160
     atcaatccta ggcaaaaaag tacgtggact tctggacagt ggagcaagct gttccttgtt      2220
     tggtggtagc gcggtcaaca ttatcgaaga gctacgacta cggaaaggcg aagctagggg      2280
     tcaaataaaa acggtcgatg gtacagcgca caacatacga aacttcgttt atcttcccat      2340
     agcattcaac aatcagattc agacaatcgc agtattgctg gctccttcct taccagaatg      2400
     tgtagtgctc ggcatgaact tctggaatac ttttggggtt aaacctgtgt gctttgcctt      2460
     gaaggaagcg aacgtcgaga tcatcgaacc gtcggaagtc gtagagtcca cagtagaaga      2520
     accaatgaag gagttaacac cacaacagaa agaagcgcta gatcgggtca tcgccacttt      2580
     tcccacagct aaggaaggca agctgggtcg aaccagactt tacgagcatc ggattgacgt      2640
     cggtgaggca aaaccgaaaa agcagcgaca ctatccaatg tcaaagtacg tgctggatga      2700
     agtcaacaag gaaatcgacc gcatgctcgc gcttgatgtg atagaggagg cgatgttctc      2760
     gccatggaac aacccgcttg ttgcggtgag aaagaagaac ggtagttgca gggtgtgcct      2820
     agatgcacga catctgaact cgatcatgac caatgaagga tacccgattc ctcagatctc      2880
     cgccatcatc aacaatctcg gtggctgtgc ctacatctct tcaattgatc tgaaggacgc      2940
     cttctggcaa cttccactgg aggaggcatc cagacctatg acagcattca cggtaccttc      3000
     gagaggacac ttccaattca aggttgttcc ctttggactc tgcaccgcca gtcaagcgct      3060
     gtcgcggttg atgactcaat tatttgcgga cctggagcca caagtctttc attacctgga      3120
     cgatatcatc atttgttccc gctcattcga cgaacattta gcaatgctgg cagaggtagc      3180
     agctcggctg cggcgtgcga acctaaccat atcgccggat aaatcgaaat tctgcaggga      3240
     agaaataaaa tatttgggtt acgtcctgaa tgaagagggt tggaaggttg acgaggacaa      3300
     aatagcctgc attgtgaagt atccacctcc aacaactagg aaggaagtac aaaggtttct      3360
     tggtttatgc aactggtaca gaaggttcat cgcagagttt tcccgcatcg cagcaccact      3420
     aactgaattg accaaaacca agacaaaatt ccggtggacg gccaaggcag aagaagcatt      3480
     tctaaacctc aaggcatcgc tagtatcggc accagttttg atcatgccgg attacaacaa      3540
     gcccttctcg gtagcatgtg acgccagtga tatcgccatc ggtgcggtct taacccaaga      3600
     agtagatgga gaagaacacc cggtgagcta ctcacaaaaa ctatcatcct cggagcgaaa      3660
     atactctgta accgagcggg agtgcctagc ggtaattcgc gctgtggaaa aattcagggg      3720
     atatatagaa ggagtaaaat tcgtcgttta ctgcgatcat gcggcccttt cgtatctgct      3780
     gtcaatgaaa aacccaacgg cactaatgag caggtggatt cttcgattga acgcgttcga      3840
     ctatgaaata aggtatcgca agggaagcgt caacgtagta ccagatgcgc tctcgcgagt      3900
     ggctgcggcc accacgttca atttgcagac ggactctgag gattcatggt acgatgcgct      3960
     gttgcacaag ataaaaacgc aaggtgaaga atttcctgat tttaggctag tggacaacga      4020
     actctacaag aactgtttgt attcagaagg gggagtgact gcacacagat ggaagcgagt      4080
     tgtgccggtg aagaaccgcg tagaaatcat aaaacgttac catgatgcgc caactgctgg      4140
     acatctaggg ttacacaaga cgctcgacaa aattcaagct cacttctatt ggcctaaaat      4200
     gagagaaaac gttggacagt atgtcagaat ttgcgaagtg tgcaaagcaa gcaaagcgcc      4260
     aaattccacc atgatgccgg atatgggaag tctgaaacct gccagaatac cgtgggaact      4320
     tgtgtcggta gattttgttg gtccattgac ccgctcgaag cgaggtaaca cagtcctgct      4380
     agttgtggta gattggataa cgaagtacgt catcgctcat cccatgcgca gtgccgattc      4440
     aggcaaaatg atagagtttc tagagcagca ggtctttcta aaattctcac gtcctagaat      4500
     cattctctca gataacggga ggcagtttga gtctttggcg ttcaaatctc tcctctctcg      4560
     tcacaaaatc acgcacatga aaacagcatt ctattcgccg atggtaaaca acgccgaacg      4620
     cgtaaaccgg gtgctcatca cctgtgttcg tgcgcttctg gacgagaatc acgcaggatg      4680
     ggatgacaat ttggctgcca taacggcagc aatcaacagc gccaaacatc aagtgacggg      4740
     agtgagtccc catttcgcaa acttcggaag agaccttcta ctccacacag acctgtacac      4800
     tcaggaaaag atgaacacac cggaagaccc aaaggtggca caggacatac gtctatcgac      4860
     ggtgaaaaga atccaggagt ttgtgctgca gcgaataagg agaaaccatg agaagatgaa      4920
     gcagagatac aatctacgca ctcggcaggt ggatttcaag gttggcgaca tcgtttggag      4980
     acgcaccttc acgctgtctt gcaaagcaga tcacgtaaac aagaagctgg acccaaagtt      5040
     cgttccagct atggtgaagc aagttctggg gaaaaacatc tacttgctag aagacgttgc      5100
     agatgggaaa gtaggccgtt atcacgcaaa ggatatcaag gccgattaag cgccattggt      5160
     taagctatgt ccacaggtaa accctgtcaa caatgagttc tacgctccga aaatccgtgc      5220
     caaatcggga aaatggcagc caagtcaggt gtgatgagca ataacttctt catgaatacc      5280
     tctccacctc gacaaaacct tcagctatga aagcagcttt gctgcagacc acgctcttcc      5340
     tagcgaagat gaaaacacat gcgatgcggt tataacctca gagtcaaagc ccatgactct      5400
     caccagatga tgaagatttg ttgcggtcat caaacgcttc cgtcgcgcca ggaagtagac      5460
     cgtttgccgt tcgcgatccg ggagaaatcg taccttgtac tcttggaaac gggatgcagg      5520
     gaactcgtca gtgtaccaaa tagtgtcttg gataggagga gcggagtccc ggagtccgac      5580
     gaccaaaaat cggttcggcg cggagtcaaa gcttacggcc actatcaggc gcagcgaggt      5640
     atcatctgga tatgctgagg gtgaaggaca acgtgcagaa gcctacggaa ggcatgggag      5700
     attgggaccc tgaaaactca tagtgagtaa ggaggctcca aataccagca actgaagcga      5760
     caacacgaca aggtgaagcc tacggaaggc acgggagatt gggaccctga aagcatgtag      5820
     tgagtatggt ggctccaaat accaaatgag atcagctatg aacaacacca gttacgagga      5880
     gttcagctcg agaaacacac caagcgtgga agcaatgaag tcacaagcct tggatggtgt      5940
     actggcggca gcagcagctg caaacatcaa tcagttccaa agtgttacgc aatcctgtaa      6000
     atctgtcaaa taaaggtctt ctcggcacct cgtagtgttc gggcgattgc atggcattat      6060
     catcccgggt attacccaaa agcaacgcga ccaggggcgc ggatattcca aggcaacttg      6120
     gaattgtgaa ccctattctt ggacccatgc atatcgaggg cgaggaaatg cgctcttttc      6180
     cgaactaact acacaagcta tgctctagac ttcagtcaga gactaagcct ttaggcacga      6240
     aaaaaggcag ttataaggaa tcactccacg aatgatatcc tagccttaag ttacttagcc      6300
     aaaactatag ataacctcta tgttatgcgt tagttgtagg atttttctag ttttagtcgc      6360
     aactagaggt aatccattgt atgtttcgct gtgggacagc tagcatagag atgatggaca      6420
     agaacttctc tagagaccat ttgccaagac ttcgttggcg tctgatcgat ttgtctgaca      6480
     ggatacgctg tcgtgtatag atcattatga gttttggatg tagtgcactc actctggcaa      6540
     gtggttagac ttgcgttatt tagttcgtat gtttttgtcg tttagtatgt cgcttaaagc      6600
     taaacaacca gatcagttca gtctctagaa aacttcttaa tggaagtgaa agtttagaat      6660
     ttttcatgaa tcgccgctac cgattcatga aaaattcaat ccccacagtg aagttg          6716
//
ID   Gypsy-369_AA-LTR repbase;    DNA;    INV; 1366 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-369_;
KW   Gypsy-369_AA-I; Gypsy-369_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1366
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1366
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 228-228 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1366 BP; 416 A; 311 C; 364 G; 275 T; 0 other;
     tgtaacgttc atttcgaatg tcttcaaatt ttgagcaaat taattatgag ccacttattc        60
     gcatacgccc tttgtcaaaa taaatgacag tactcagcag tcgtaccaaa acgaaacaac       120
     aaaacttctt ccgcttgagc caacaaagga aaaaaggaag gagccattcg gcagaaagca       180
     agtgtcgacg gagccgttca gtgccatttt gtggtgcctc cagtcttggg gaataaaaat       240
     caaaagtgcg tgcgcgagca ggatcggaga aagcaaatcg catcgctgta agttcctgtg       300
     aagggcggaa ttgtgtacga agcagacgac ggaacggtcc atttcgttgg ccattcggac       360
     acgcgcaacc ttccggctgt aaagagccac aatcaccgcc agccctcaag accacggacg       420
     caaatcaaca aaagcaaata ggcgaggaaa acggccggta agttccaacg gattagatcg       480
     aatgttcgga cactcatgaa gcttctttct tagtcgatac cggcttccgg cagtagaaac       540
     gctggcctac gattgaatag cggcgtgaaa tcacctacac aaaaggtaag aacctctaat       600
     tgacgccgaa agcaagagtg ttaaaccctc cctgcaatta atagacaatc cagaggcgaa       660
     gttggcaagg gcaccgacaa gcacgagctg agatagaata acaaagaaag gcgtctctac       720
     tacagggtga gttacccaaa aaaaagtgca agcctatgga gtgaggctaa tgtggagccc       780
     atacagggcg cctttttttt atttccccct cttcgcatta ggcagacgaa ttcctagctg       840
     gtggatgaac ggtgaactcc gctccaatac cggattgaga cagttcccgc gaagcccaag       900
     agagtgctga acgtcaccga acggcagggt gtgacgagcg ctggagctca attcgctggt       960
     aatccagtca aactcaagcg acgggaagaa aggaagcaac cggtctgagg ccggaaatcc      1020
     accacgaaaa gaacggcgga gcgactacct gtccgcggct gagaggaagg agctaatgcc      1080
     tagcgatcgg ccgagtggct caactacagc gagagttgca gagcgtaggc ggtccgtgag      1140
     tactaaaaac atggtgactg tggtcacaga agactagccc aagggctgaa gaaggtagtg      1200
     tgccatcagg cagcaatgac tgctcgacag atagaaagtt agggacagat agagtagaag      1260
     cttagccctg ggggcgtggg tgtgcaattg gcaaaacgaa tatatgatgt ggctcaaatg      1320
     aattagtggc tcttttcttt cattttggct tgaggaaaac cttata                     1366
//
ID   Gypsy-36_AA-I repbase;    DNA;    INV; 4203 BP.
XX
AC   AAGE02023632;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_AA_;
KW   Gypsy-36_AA-LTR; Gypsy-36_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023632; Positions   26765   22563.
XX
CC   Positions [3181-3639] - Integrase core
CC   'GTCTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..4161
FT                 /product="Gypsy-36_AA-I_1p"
FT                 /translation="MAQNANPGVPVNNAELPANVIPAAGARALPPNFHIDP
FT                 YDRRKIRWCRWVERLETAFAIYDVNDAVLRRNLLLHLMGPETYEIACDKVA
FT                 PQNVREMDYQQIVNTLEAHFNPQPLEISENFRFKCRRQGDKNAASPDETVD
FT                 EYLVALRRIAVTCNFGNYLETALRNQLVFGLKRNDIRGRLLERRQLTLQDA
FT                 IDVAVSMELSLKGGAEIEGAMAKQEVNALQKPQGKAKNKNVGKSLQSSSRN
FT                 ADDLHCFRCGDKSHLAKKCKHQNTICSYCKLKGHLERVCMKKAAGKRSEFG
FT                 PSGLKSAPARAHHVEEQCEEESIDNIAVDEICMVASRPGDAKMWATVIVNG
FT                 VPVRLELDTGCPVSIVNAECYGKHFKNIPLRNCSLKLVSYCNANIDVLGYF
FT                 DAEVDYQGTKKVLPLYVVRSTKHPLLGREWLKALAVDWNKVLQSSCVNSIA
FT                 SADRSAVLQSLFAKYRNVFGDSIGRIASVQANLRLKPNAKPVFLKARKVPF
FT                 NMKKVVEDELDKLVAQGVLSKVDQSERATPIVPVKKSENRVRICGDYKQTV
FT                 NPLLMVDRHPLPTVDELFSSLYGGDKFSKIDLVQAYLQLEVAPEDREILTL
FT                 STHRGLYRPNRLMYGIASAPAIWQRQIEIILQDIPGVSVFLDDIKITGPND
FT                 EIHLRRLDEVLRRLSYYGIRVNQGKCVFFADKIEYCGYEIDREGIHKMKKK
FT                 VEAIQEMRRPKTKDEVRSFVGMINYYGRFFENLSTLLYPLNNLLKNNVVFK
FT                 WTSDCEQSFQDVKKRMQSENCLVHYSPELPLLLATDASPYGVGAVLSHLYP
FT                 DGSERPIQFASQTLNSIQQRYMQVDKEAYAIVFGVKKFFQYLYGRRFVLLT
FT                 DNQAITKIFGEHRGLPVMSALRMQHYATFLQSFDYEIRFRRSADHANADVM
FT                 SRIPLKQTVSGNVIEESDIVEMNQIETLPLTADELSQATADDKSVNSLIQG
FT                 LKHGQMVDARDRFGIDQSEFSLQRGCLLRGIRVYVPPMLRRRVLEELHTTH
FT                 FGITRTKSLARGYCWWVGMDRQIEEMIANCTDCQSVRPEPSKATPHCWEPA
FT                 TMPFQRVHADFAGPFMDTYFFILVDAYTKWTEIRICKAITAEATEAMCREI
FT                 FSTFGIPSVFVSDHGTQFTADSFQRFLKRNGVVHKMGAPYHPATNGQAERY
FT                 VQTFKQKLKALKCTKSKLQTEIANILMVYRKTIHPSTGQSPSMLMFGRQIR
FT                 SRLDLLLPKNYPKESPNHVVRTFNDGDRVRVRDFLTPNKWQFGRIVFKAGK
FT                 LRYQVRLDDGRLWERHVDHIVGVGECLMPRVASGAIPEPSILLPTVPVFTR
FT                 TTSKPLLIATDTASAAVEDTSITNRPNITAETSSTSITEQPGRLDVARKSE
FT                 GQPLRRSTRIIRAPQKLNL"
XX
SQ   Sequence 4203 BP; 1185 A; 925 C; 1075 G; 1018 T; 0 other;
     gaattggcga cgaggatggc gcagaatgcg aatccgggtg ttccggtaaa caacgctgag        60
     ctgccagcaa atgtgatccc tgcggctggg gctcgagctt tgccacccaa cttccacatt       120
     gacccctacg acagacggaa aattcgatgg tgtaggtggg tcgaaaggtt ggaaactgcg       180
     tttgcgattt atgacgtcaa cgatgccgtg ttgcgtcgta atcttctact acaccttatg       240
     ggaccggaga cctacgagat tgcgtgtgac aaggtagctc cgcaaaacgt acgtgagatg       300
     gactatcaac aaatagtgaa tacattggaa gctcacttta acccgcagcc cttagagata       360
     agtgagaact tccgcttcaa atgtcgacgc caaggggata aaaacgccgc ttctccagac       420
     gagaccgtgg atgagtatct agttgctctc aggcgaatcg cagtaacatg caacttcggc       480
     aactatttgg aaacagcctt gcgtaaccaa ttagtattcg gccttaagag gaacgacata       540
     cgcggccgct tgttggaacg aagacagctg acactacagg atgctattga cgtcgccgtc       600
     agcatggagc tctcgttgaa gggcggtgcc gagatagaag gtgcgatggc caaacaggag       660
     gtaaacgctt tgcagaagcc acaaggtaag gctaagaata agaacgtggg aaaatccttg       720
     cagtcatcca gcaggaatgc agatgatttg cactgcttcc gttgcgggga taaatcacat       780
     ctagcgaaaa agtgtaagca tcaaaacact atttgctcgt actgcaagtt aaaaggccat       840
     ttggagagag tatgcatgaa gaaggctgca gggaagagat cggagtttgg accatccggt       900
     ctgaaatcag cgccagcgag ggcacaccac gtcgaggagc aatgcgaaga agaaagtatt       960
     gacaacattg ctgtggacga aatttgcatg gttgccagtc gacctggtga tgcgaaaatg      1020
     tgggcgacag ttattgtgaa cggtgttcca gtgcgtctgg aattagacac gggttgtccc      1080
     gtaagcattg tgaatgcaga atgttatggg aagcacttca agaatattcc gctgcgaaat      1140
     tgttctttga agttggtcag ttactgtaac gccaacattg atgtactggg atacttcgat      1200
     gcagaggtgg attatcaggg taccaagaag gttttgcctt tgtacgtcgt gcgttccact      1260
     aaacatccgt tgctgggtcg agagtggctg aaagcattgg ccgttgattg gaacaaagtt      1320
     ctgcaatcaa gttgtgtcaa ttcaattgca agtgctgatc gttccgcggt attgcaaagt      1380
     ttatttgcta agtaccgcaa tgtgtttggc gattcaattg gaaggattgc ctcggtacaa      1440
     gctaatttgc ggctgaagcc caatgcaaaa cctgtcttct tgaaggcccg gaaggtaccg      1500
     tttaatatga agaaggttgt ggaggacgaa ttagataagt tggtagctca aggggtgctt      1560
     tcgaaagtcg atcaaagtga aagggcaacc ccaatcgtcc cagtaaagaa atcggagaat      1620
     cgtgtgcgta tctgcggcga ctacaaacaa accgttaatc cgctgctgat ggttgatcgg      1680
     catccgttac caaccgtgga tgaactgttt tcgtcactct acgggggtga caaattctcc      1740
     aaaatcgact tagtacaggc gtacttacag ctagaggttg cacctgaaga ccgtgaaata      1800
     ctaactctca gtacccatcg agggctatac cgtccaaatc gtctgatgta cggcattgca      1860
     tctgcccccg ctatatggca gcgtcagata gaaatcattc tacaagacat tcctggagtt      1920
     tcggtatttc tggacgacat caagattact ggtccaaacg atgagatcca cctgcgtcga      1980
     ttggatgagg ttctacgtcg attgagctac tacggaattc gtgtgaatca aggaaagtgc      2040
     gtcttctttg cggataagat cgaatattgc gggtacgaga tcgatcgaga aggcatacat      2100
     aaaatgaaga aaaaggtgga agcaattcag gagatgcgta gacctaaaac gaaggacgag      2160
     gtccgatcgt ttgtcggcat gatcaattac tacggaaggt tctttgagaa cctaagcacc      2220
     ctgctctatc ccttaaataa cttgttaaag aacaacgtag tgtttaagtg gacaagtgat      2280
     tgcgagcaat cttttcaaga tgtgaagaag aggatgcagt ctgagaactg cttggtgcat      2340
     tactcacctg aattaccttt gctactcgcc acggatgcgt ctccttacgg tgtcggcgca      2400
     gtcttaagcc acttgtaccc agatgggtca gagagaccaa tccaatttgc ttctcagact      2460
     cttaacagta tccagcaaag atacatgcaa gttgacaagg aagcttatgc aatagtgttc      2520
     ggcgtcaaaa agttttttca atacctgtac ggccggagat tcgtgttact cacggataat      2580
     caagccataa cgaagatctt cggtgagcac cgaggccttc ccgtaatgtc tgctctacga      2640
     atgcagcatt acgctacgtt tctgcaatcg ttcgactatg agatacgttt tcggagatct      2700
     gcagatcatg cgaacgcgga cgtcatgtcg aggattccac tgaagcaaac agtttcggga      2760
     aacgtcatcg aggagtccga tatcgtcgag atgaaccaaa tagagacact acctctgaca      2820
     gcggatgaac tatcgcaagc aactgcagat gacaagtctg tgaacagttt gatccaggga      2880
     ctgaagcatg gacaaatggt tgatgccaga gaccgttttg gaatagacca gagtgaattc      2940
     tctcttcaac gtggatgttt gctgcgaggt attcgggtct atgttccacc tatgttacgg      3000
     cgaagggttc ttgaggaact ccataccact cacttcggca ttactaggac aaaatctcta      3060
     gcaagaggtt actgctggtg ggttggtatg gacaggcaaa ttgaagaaat gattgcaaat      3120
     tgtaccgact gccagtctgt tcgaccagaa cctagtaaag caacaccgca ctgttgggaa      3180
     cctgctacga tgccgttcca gagagtgcat gctgatttcg ctggaccgtt tatggacaca      3240
     tatttcttca tcctggtgga cgcctacacc aaatggacag agatcaggat ttgcaaggct      3300
     ataacggccg aagctacaga ggcgatgtgc agggaaattt tcagtacgtt tggaattcct      3360
     tctgtgttcg taagcgatca tggcactcag tttacagctg actcctttca acggttcctg      3420
     aagcgaaatg gagtagtcca taagatgggg gccccgtacc accccgctac aaatggacaa      3480
     gcggagcggt acgtacagac tttcaagcaa aagctaaaag ctttgaagtg tacgaaatcg      3540
     aaactgcaaa ccgagatagc gaacatctta atggtatacc gcaagactat tcatccctca      3600
     actggacaat cgccttcgat gctaatgttt ggaagacaaa tacgttcccg tctggaccta      3660
     ctgcttccca agaactaccc gaaggaatca ccaaatcatg ttgtacgaac gttcaacgat      3720
     ggagaccgag tgcgcgtacg agatttctta acacctaaca aatggcagtt tgggagaatc      3780
     gtgttcaagg caggcaagct acgatatcaa gtacgactag acgacggaag gctatgggag      3840
     cgacatgtag accacatcgt tggagttgga gaatgtttga tgcctcgtgt agcttcggga      3900
     gctatccctg aaccgagtat tcttctacca acagttcctg tcttcactcg cacaacttca      3960
     aaaccgttgc tgattgccac cgatactgct tcagcggcgg tggaagatac tagcatcacc      4020
     aatcgaccaa acataacagc ggagacatct tcaacgagca tcactgaaca gccaggtcgg      4080
     cttgatgttg ccaggaaatc agaagggcag cccttaaggc gttcaacccg aattatacga      4140
     gccccccaaa aacttaactt gtaattttga attgtattac atttgcttta cgagggggag      4200
     agc                                                                    4203
//
ID   Gypsy-36_AA-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   AAGE02023632;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_AA_;
KW   Gypsy-36_AA-I; Gypsy-36_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-218
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02023632; Positions   22562   22345.
XX
SQ   Sequence 218 BP; 66 A; 48 C; 34 G; 70 T; 0 other;
     tgtcatacct ctgtaactaa attaactttg cgctaataga atatcgcaca tacctatctt        60
     taactcatga cctttctttc taaaaaccgt gcgagaaaca ttgtcattgt attcaagagt       120
     aaacaaagaa taaacgtgta tgaattcgag tccgttcttt taattacgcg tccagttccg       180
     tttgcggatt tcggtccaga tttaccccgg atacaaca                               218
//
ID   Gypsy-36_AnFu-I repbase;    DNA;    INV; 6300 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-6300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2920-2920 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1746..2789
FT                 /product="Gypsy-36_AnFu-I_1p"
FT                 /translation="MQITECKPKDGEDEIDKKTFIRWKEQFEATMQFAGIS
FT                 SEVMKMNALKMKAGSKLMDMLEGIPSNVDLPDEGLLPYSNAIKRLESNYNS
FT                 RDYVFLQKQKLRAMSQNSDESDLTYVKRIINFAKICGYKEEQMIEIVVDVI
FT                 QSHALNAKVRVAARKILRKDGTLSNLIDKIRACETDTINEKMFEKTHQRIT
FT                 AGEVAAVSYGIHSKHETHPRRLERGPTRHQAGYQQNYWNMQRAKYLNKSKF
FT                 PRSSNETYESKSQRQKCWRCTSYYHAPVNCHALEKRCRQCNITGHIERACG
FT                 LFSENKAKRQTSEENGTTQPNKIRKIAAITHNDSVADDNPNKEDKHVSAFF
FT                 PSEVE"
FT   CDS           3054..6278
FT                 /product="Gypsy-36_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VSTTECKKTPAVIEVSNFELYKLNNNGLINTVLQMEK
FT                 DEGFILGYVAGLPVRFLIDSGSDVNTVDEMTFSILQTSDPVKIPIYSVKYS
FT                 TDRSLKAYGMEDEIPVKASFVAELFISKERPKLLEKFYVIEKARPLLSRST
FT                 AIRYSVLQMGADIPIRVNKNHVIQELTPGEIFTLSEQGEFPKFKVEPIMLD
FT                 YDKSLPPSRNVYTCIPPAFKSETEKRLKDLLAAGIIERVNGDMERLFCSSL
FT                 LVVPKGKNDIRLVVDLRGPNKNIIRTPFRMPTLEAILSQLNGACWFSTIDL
FT                 TSAFFHVELHEKCRHLTNFFAGDGTYRFKRLPFGLCNSPDIFQEILQTVVL
FT                 AGCPGTLNYLDDILVYGKSKEEHDRNLQSTLQKLHYHNVRLNSNKCIFGTR
FT                 TVKFLGFTLSADGWSVEDDKRRAIENFRRPESLTEVKSFLGLVNFTERFIQ
FT                 HRAEKTEKLRKLARSDSFYWTNEEQQEFEFLKNDSLNTITKLGFFDHNDTT
FT                 ELFVDASPIGLGAVLVQFNKDGCPRIIACASKSLTTAEQRYPQTQKEALAI
FT                 VWSVERFTYYLINKRFTVRTDSEANQFIFSGLHRSGRRSITRAEAWALRLL
FT                 PYHFNIERVPGHLNVADALSRMISSSQIDDAFDEDNEKHLLYSLDAGDMNI
FT                 TWTEIQIESEKDKDLIEVKNSMQSGKWSKHLRRYESERKSLKTLGPLIFKD
FT                 DRIILPTSLRKRALDSAHQGHVGCGATKRILREFFWWPNMSKEATEFVGSC
FT                 EICMAISKKNPPIPLSSRNLPNGPWEILQMDFLSLQGCGSGEFLLVVDTYS
FT                 RFLQIEEMRQTDAKTTNTALCKIFSTWGLPLIIQSDNGPPFQSSEFISYWE
FT                 EKGVRVRKSIPLSAQSNGAIERQNQGVIKAISAARKENRNWRIAMEEYIQV
FT                 HNTRKHHSRLGVTPFELLVGWRYRGTFPCLWESKNVLDRSAVREDDAVAKL
FT                 VSKQFADKHRGAKESPISIGDTVVVAIPRRTKTDPKFSEDRYTVLAREGAK
FT                 IVIVDRIGLKITRSVNDVKRVTNRNDLALSSDEESSQTDSNLVKPTRVLER
FT                 PRRDIRKPERFKDSVMEY"
XX
SQ   Sequence 6300 BP; 2133 A; 1263 C; 1405 G; 1499 T; 0 other;
     atggcgcatg tcggtaagtt tgtccaaagg tgaactttag agggaccgac aattttaggg        60
     attgagagga gtgctattaa aaagaataga aaaaacgaca gattaagctt ggtgcgtctc       120
     ttgaccatgc ggaagccgcg gaagccattt tgtaagaacg tgatatacga taccgaaagt       180
     gttgctagag ggtttgcggc aaacacaaag gttgcataac tgtgaaccta aaacgacaca       240
     tcacgatgga acgtatcgaa ctgggatgac ggtggtttat taagctacaa gggagtttga       300
     agttctaccg acgctaccgc cgcggtggca gccattttgt tcaaggaaca ccgaaaagag       360
     aaaacggcct cggctcgtca aaaacggctc ttatgaaaaa gaaaaaggca ccaatgaaca       420
     ttagaagcgt tgaatcgaat attttctcga cgtttaaagt attctagacc agataacgta       480
     aacgaatata aaaagtgttt ggtgtcaatg agtggacgta aaaccgaaaa ttaccctatc       540
     aggtaaatta ttccttgagt gaaaaatgtg caatcgatgt ctccgagtgg acataatccg       600
     aaattacccc gtgagataaa ttatccctag gaagaaaaat ttgcgatcgg tgtctccgag       660
     tggacgtaaa tccgaaatta ccctgagagg taaattattc ccagagagga aaatatgcga       720
     tcggtgtctc tgagtggacg taaacccgaa attaccctgt gaggtaaatt taccctagaa       780
     aggaaaatat gcgatcggtg tctctgagtg gacgtaaacc cgaaattacc ctgagaggta       840
     aattaatcct agaaagtaaa atatgcgatc ggtgtctccg agtggacgta aatccgaaac       900
     taccctgaga ggtaaattat tcccagagag gaaaatatac gatcggtgtc tctgagtgga       960
     cgtaaacccg aaattaccct gtgaggtaaa cttaccctag gatgtaaaat atacgatcgg      1020
     tgtctccgag tggacgtaaa tccgaaatta ccctgagagg taaattattc ctagagaata      1080
     gaatatgcga tcggtgtctc cgagtggacg taaacccgaa actaccgtga gaggtaaatt      1140
     attcccagag agaaaaatgc gatcggtgtc tcagagtgga cgtaaacccg aaactaccct      1200
     gtgaggtaat ttatccctag aaagaaaaat ttgcgatcgg tgtctccggg tggacgtaaa      1260
     accgaaatta ccgtgagagg taattttcct atagaggaaa atatgcgctt ggtgtcttcg      1320
     agtggacgta aatctggaag tactctgtta ggtaaaaagt tcttgcttta cagtggatcg      1380
     caccttattt cataatttat taatcttatg ttcacgagca tcaaaggcta ccgactccaa      1440
     ggtcaatttg ctcttattga attacatact ttgtttaatg cttttagcaa cagcagaacc      1500
     gcaacaacgg ccgtaacaaa gttagaacag gctcgaaaag aagaaaaaca acttaaggca      1560
     aaactggaaa tacaatcgta tcgaaagaag acaaaacaag ggagcagttg gttggaagag      1620
     ccatcagaag attgtgtgtt acgtacttcc cacgtgggtt gtctacccat atcgccaaca      1680
     gcaaagactc tttggacccc gctgataacg agaattcatt tctcactgca ttgtcgtttg      1740
     ctactatgca aataacggaa tgcaaaccta aggatggcga agatgagatt gacaaaaaaa      1800
     cttttattcg ttggaaggaa cagttcgaag cgacaatgca attcgctgga atttccagcg      1860
     aagtaatgaa gatgaacgct ctgaaaatga aagccggaag caagcttatg gacatgctcg      1920
     aaggaatacc cagtaacgtc gatttaccag acgaaggatt gcttccgtat tcaaatgcta      1980
     tcaaaagact ggagagcaat tacaattcac gagactacgt gtttttgcaa aaacaaaagc      2040
     ttcgggccat gagtcaaaac tccgatgagt cggaccttac atacgtaaaa cgtattatca      2100
     atttcgctaa gatatgcggt tacaaagaag aacaaatgat agagatagta gtggatgtga      2160
     tacaatcgca cgctttaaac gcgaaagttc gtgtagctgc cagaaaaata cttcgaaaag      2220
     acggcacatt gtcaaaccta atcgacaaaa tacgcgcttg cgaaactgat actatcaacg      2280
     aaaaaatgtt tgaaaaaacc catcaacgca ttacagctgg tgaagtggcc gctgtctctt      2340
     acgggattca ctcaaaacat gaaacacacc caagacgctt ggagcgagga cctaccaggc      2400
     atcaagcggg ttaccagcaa aattattgga acatgcaacg ggccaaatac ttgaacaaga      2460
     gcaaatttcc gcgttcttca aacgaaacgt atgaatcgaa gtctcaacgc cagaaatgct      2520
     ggagatgtac cagctattat cacgctccgg taaattgcca tgcattggaa aagaggtgcc      2580
     gccagtgcaa catcacagga cacatcgagc gcgcgtgcgg tttattctcc gaaaacaaag      2640
     cgaagcgtca gacatcagag gaaaatggaa ccacacaacc caacaaaatc cggaaaattg      2700
     cagctattac gcataacgac agcgttgcag acgataaccc aaacaaggaa gataaacatg      2760
     taagtgcttt ctttccgtcc gaagtcgaat aaattgttgc aatcttcgat atatccattt      2820
     acgaactcct cataaaagaa aagggaatac atttcaagag aagagttact aaacacatac      2880
     atcccacatc taatgacaat tttgcaggca attttgaaac gatataaaat aaaatcattt      2940
     tttcgatgta ataaaataag ccgatgtcgc tgatatcttt aatcgaatta cgacgccaaa      3000
     caatttcgct gtttatatag aacataacgc tcttaattct taatcatgtt taggtttcaa      3060
     caacagaatg taaaaaaact ccagccgtta tcgaagtatc taatttcgag ttatacaaat      3120
     tgaataacaa cgggttgata aatacggttc ttcagatgga gaaggacgaa gggtttatat      3180
     tgggatatgt agcaggatta cccgtacgat ttttaattga ttctggttct gacgttaata      3240
     cagtcgacga aatgacattc agcatattac agaccagtga tccagttaaa atcccaattt      3300
     atagtgtaaa gtacagtacc gatcgatctt taaaggcata cggtatggaa gatgaaattc      3360
     cagtaaaggc atcgtttgtg gcagaactgt tcatatccaa agaacgtccc aaacttttag      3420
     agaaatttta cgtcattgaa aaagcaaggc ctctcttaag cagaagcaca gcaatcagat      3480
     atagtgtact ccaaatgggc gcggatatcc cgataagagt aaataagaac catgtcatac      3540
     aagaactaac acctggtgag atctttacat tatctgaaca gggggaattc cccaaattta      3600
     aagtagaacc cataatgttg gactacgaca aaagcttacc gccgtcccgc aacgtatata      3660
     cttgtatccc acctgcattt aaaagcgaaa cagaaaagcg tttgaaagac ttattggcgg      3720
     caggaatcat cgaacgagtg aacggagaca tggaaagatt attctgctca tcgctgcttg      3780
     ttgtccctaa gggtaagaac gacattagac tcgtcgtcga cctcagaggt ccaaacaaaa      3840
     acatcatacg gacacccttc agaatgccta cattggaagc gattctgtca caactgaacg      3900
     gcgcatgctg gttctcaaca attgatctta caagcgcatt ttttcatgta gagttacacg      3960
     agaaatgccg tcaccttacg aatttcttcg ctggagatgg aacgtaccgt tttaaaagac      4020
     taccattcgg cctatgtaac tcgcccgata tttttcaaga gattttgcag actgtggtat      4080
     tggcagggtg cccgggaacc ctgaactact tagacgacat cctcgtatac ggcaaatcaa      4140
     aggaagaaca tgatagaaat ctgcagtcaa ctctacaaaa gctacactat cacaacgtca      4200
     ggttgaactc caacaagtgc atattcggta cacgaacagt aaagtttcta ggattcacct      4260
     tatccgcaga tggatggagc gttgaggacg acaaacggag agctatcgag aatttccgaa      4320
     gaccggaatc gttgacggag gttaaaagtt ttctcggctt agtgaatttt acggaacggt      4380
     tcattcaaca tagagcggag aaaacagaaa agctgaggaa gctcgcaaga tctgacagtt      4440
     tttattggac taatgaggaa cagcaggaat ttgagttttt aaaaaacgac tcacttaaca      4500
     caataaccaa actcggtttc ttcgaccaca acgacaccac ggagcttttt gtggacgcat      4560
     caccgatagg gcttggtgcg gtcttagtgc aattcaacaa agacggatgt cctcgaataa      4620
     tagcctgtgc ttctaagtcc ctgacaacag ccgaacaaag atatccgcaa acacagaaag      4680
     aggcattagc gatcgtctgg agcgtggaaa gatttacata ctacttgatc aacaaacgat      4740
     tcacagtaag aacagactca gaagcgaacc aatttatatt cagtgggcta catcggagtg      4800
     gaagaagatc aattacacga gcagaggcct gggccctgag attactacca taccacttca      4860
     acatcgagag agtacccgga catcttaacg tagccgacgc cctttcaaga atgatcagca      4920
     gttctcaaat tgatgacgca ttcgacgaag acaatgagaa acatttacta tattcattgg      4980
     atgccggcga tatgaatatc acttggacag agatacagat agaatcggaa aaagacaagg      5040
     atttaataga agtcaaaaat agtatgcaat ctggaaagtg gtcaaaacat ctccggcgct      5100
     atgagtccga aaggaaaagc ctgaaaacgc tgggtcctct tatctttaaa gacgatagga      5160
     ttattttacc gacgagcctt cgcaaaagag ctctggattc agcccatcaa ggtcatgtgg      5220
     gatgcggagc aacaaaacga atacttcggg aattcttctg gtggccaaac atgtctaaag      5280
     aggcaacaga attcgttggt agctgtgaaa tatgtatggc aatttcaaaa aagaatccac      5340
     caatcccact ttcatctcgg aaccttccga acggaccatg ggaaatctta cagatggact      5400
     tcttaagttt acaaggatgt ggctctggag agtttctctt agtagtcgat acatattcaa      5460
     ggtttttgca aatcgaagaa atgagacaaa ctgatgcaaa aaccactaat acggctttat      5520
     gtaagatatt ctctacttgg gggttgcccc tcattattca aagtgataac ggtccgcctt      5580
     ttcaaagttc agaattcatc agctattggg aagaaaaagg cgtaagagta aggaagtcta      5640
     ttccccttag cgcccaatcg aacggagcca tagaacgtca gaaccaaggc gtcattaaag      5700
     cgatatcagc ggcaagaaaa gaaaacagga attggagaat cgcaatggaa gaatacattc      5760
     aagttcataa tacacgaaaa caccattcgc gactaggcgt aacacctttt gagctacttg      5820
     tcggttggcg ttatcgtgga accttcccct gcctctggga atccaagaac gtattagacc      5880
     gatccgctgt tcgagaggac gatgctgttg cgaaactagt aagcaagcag tttgcggata      5940
     aacaccgtgg ggcaaaagaa agtccaatca gcattggtga tacagtagtg gtagcaattc      6000
     cgcggagaac taaaaccgac ccaaagtttt ccgaagacag atacaccgtg ctagccaggg      6060
     agggtgcgaa gatagtaatc gtggatagaa tcgggttgaa gataacgaga agcgttaacg      6120
     atgttaaacg agttactaat cgtaacgact tggcactaag tagcgacgag gagtcatcac      6180
     aaacggacag taacttagta aaacctacaa gagtcttaga acgaccaaga cgagatatac      6240
     gaaaaccgga gagatttaag gattcggtga tggaatattg agagtaggcg agggggaaga      6300
//
ID   Gypsy-36_AnFu-LTR repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-351
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2848-2848 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 351 BP; 144 A; 46 C; 85 G; 76 T; 0 other;
     tgtagggatt gagaggagcg gagaaagcta ataaaaaaaa tgataatgac taataggaga        60
     aaaaggtatc ggaatagttg cgaacatcag cattagaact taaaaaatta atagttgcga       120
     aaatgtaccg gtaaatttaa aaatttgact gaggcgaatt agaaagagac agaaaaaccg       180
     atgaagtgag agaatcggag agcgaaaccg tatgtgacag cgggtcgcag cgtccggcat       240
     ggaatcagtc ttgtgattga tcgcgtatag aaaagtagct gctctaagtc tgtatcgata       300
     aatgactaaa acgaaataaa ataataaaaa tgttacccgt aaatcacgac a                351
//
ID   Gypsy-36_CQ-I repbase;    DNA;    INV; 4730 BP.
XX
AC   AAWU01012843;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_CQ_;
KW   Gypsy-36_CQ-LTR; Gypsy-36_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4730
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 451-451 (2011).
XX
DR   GenBank; AAWU01012843; Positions   93386   98115.
XX
CC   Positions [3697-3936] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           516..2102
FT                 /product="Gypsy-36_CQ-I_2p"
FT                 /translation="MEKWEIPQFKFRSIPNSIIRDEWVKYKRNFQYIAAAN
FT                 EEKNATRLKNVFLAKAGPDVQEVFASLPGADVEEDKAKNIDPFKVAIEKLD
FT                 EYFSPKQHEAFERNTFWNLKPQDEETMEKFLWRTLEVAQKCNFGTTLEESR
FT                 SIAVIDKVILYAPVELKQQLLQKEKLTLDDVTRVVSSYESVKKQSMLMEGK
FT                 SGSTPAYSEHGGGGGQKSELFNVQSSSRGPPTTGECYRCGHKDHYGNDPRC
FT                 PARSVQCTRCKRYGHFSKRCKTEFGRRPTHPQSQNVVPAKRPGGSQNHWDN
FT                 KKPKYNPRHERIAQVEDNTSDPDENTSFVYNISDGDEFIWVKVGGVLIQML
FT                 IDSGSAKNILDDRAWEHLRVQEAVTTNFRTDCDQIFRAYGRESAPLKIVCV
FT                 FEADIAIDGAADRIEGSDTFYVVEGGTQPLLGRTTAKKLGVLKIGLSSVNA
FT                 GEVQERRPFPKMKDIKLIVPVDESVTPVVQNVRRPPIALLTRVEEKLDQLL
FT                 ASEIIEPVKGKKGRRIVLLGLYIDCFITDTRCE"
FT   CDS           2167..3936
FT                 /product="Gypsy-36_CQ-I_1p"
FT                 /translation="MRRANEAIKREHHMMPTIEDFLPRLKEAKFFSRLDIR
FT                 ESYYQMELAEQSRNITTFITHKGLFRFTRLMFGISCAPEMFQKHLEQILVG
FT                 CNNTVNYIDDIIVFGATEEEHDQALSEVMKVLKERDVLLNHEKCLFKVQEL
FT                 EFLGHIISVNGIRPTVGKTEALEKFREPRSVEEVRSFLGLVTYGGRFLPNL
FT                 ATITAPLRELLRGDKRFTWTAQHTGSFQKLKEMISDIRTLQFFDNTLRTRI
FT                 IADASPVALGAVLVQFEDLHNINPRIISYASKSLSDTEKRYCQTEKEALAL
FT                 VWAVERFDVYLIGRTFELETDHKPLESIFSPTSKPCARIERWVLRLQSFKY
FT                 RVEYKRGQNNIADSLSRLVQDETSGEDFEKENKFLILAIKESAAVDVEEVE
FT                 RASREDRQLQLAAQCLRDGKWGNPEVKEFEIFRNELGLIGDLLIRGHMLVV
FT                 PHTLRNRILSLAHEGHPGESLMVSRLRDRVWWPSMDREAKAWTKACESCRL
FT                 VGLPGKPAPMVRRPMPTQPWVDVAIDFMGPLPSNEYLLVIIDYFSRYKEVE
FT                 VMIKITAKETVNRLDKIFTRLGYPRTITLDNARQFVSKDFDDY"
XX
SQ   Sequence 4730 BP; 1387 A; 988 C; 1277 G; 1078 T; 0 other;
     catttggcga cgaagggata gtttttcttc agtttacagg taagagttta tggaaatcga        60
     caaaatattt gatgttatgt tgaaaaatca aatttcggct gatgcgatca ccgaaagcca       120
     cggggcggcc atcttacttt ttgttttcct ttttaactgg aattttattt ccaactggac       180
     ttttgcataa atctaataag attgtattgt ttacatacta cttcacagta gtaaccggtg       240
     ctttgcacgg tggaggcagg aagccgtcag gttggaaaaa ccgaaatcaa ggcaggaagc       300
     cgttaggttg gagaaaccgt aaccgaggca ggaagccgtc aggttgaaaa aaaaaaccga       360
     aatcaagata ggaagccgcg aagttggaaa accgaaccga ggagagtacg aatggattga       420
     aatatacaac agaaactgag gtgagcaaat gtaaacacag ggaaaaagaa taagaaataa       480
     tagtcgttgt tacttatttt agtcctttga acaaaatgga aaagtgggag attccacaat       540
     tcaaattcag atcgattccg aacagtatta tcagagatga gtgggtgaaa tataagcgga       600
     atttccagta catcgcggcg gcaaatgaag agaaaaatgc gacccggctc aagaatgtgt       660
     ttctggcaaa agctggacca gatgtccagg aagttttcgc ttcgcttccg ggggctgatg       720
     tggaggagga taaagccaag aatattgacc cgttcaaagt ggccatcgag aagcttgatg       780
     aatacttctc gccgaagcag cacgaggcgt ttgagcggaa cactttctgg aacctgaaac       840
     ctcaagatga ggaaaccatg gagaagtttc tgtggcggac gctagaagta gctcagaagt       900
     gtaatttcgg caccacgttg gaagaaagcc gttcaatcgc tgttattgac aaagtgatcc       960
     tgtacgctcc ggtcgaactg aaacaacaat tgctgcagaa ggaaaaactc acgctggacg      1020
     atgttactcg agtggtcagt tcgtacgaat ctgtgaaaaa acagtcgatg ctgatggaag      1080
     gcaaatcggg atcaactcct gcatacagcg agcacggagg cggtggcggt cagaagagtg      1140
     aacttttcaa cgtccagagc tcctcaagag gaccacccac cacgggtgaa tgttaccggt      1200
     gtggccataa agatcattat ggaaatgatc cgaggtgtcc ggcacgatcc gttcagtgca      1260
     ccaggtgcaa gaggtatggt catttctcga aacggtgcaa aactgagttc ggccggcgac      1320
     caacacatcc gcaatcacag aacgtggttc ccgccaagcg gccgggcggt tctcagaatc      1380
     actgggataa caaaaagccg aagtacaatc cgagacacga acgcattgcg caggtggaag      1440
     acaacacgag tgaccctgac gaaaatacaa gcttcgtcta caacatcagc gatggagatg      1500
     agtttatttg ggttaaagtt ggaggcgttc ttatccagat gctcatcgat tccggaagtg      1560
     ctaagaatat tctggatgat cgagcctggg agcacctgcg agtacaagaa gcggtgacaa      1620
     caaacttccg aaccgattgt gatcagattt tccgagcgta cggacgggaa tcagctcctc      1680
     tgaagatcgt ttgcgttttc gaagcggata ttgcaataga tggagcagcc gaccggattg      1740
     aaggaagcga tacgttctat gtggttgaag gtggaacgca accgttgttg ggcagaacga      1800
     cggcgaagaa actgggagtt ttgaagatcg gcttgagtag tgtcaacgct ggtgaagttc      1860
     aggaacgcag accgtttccc aagatgaagg acataaagct gattgtcccg gttgatgaaa      1920
     gtgtcacgcc tgtggttcag aacgttcgac gacctcctat cgcgctattg actcgggtcg      1980
     aagagaaatt ggatcaactg cttgcatcag aaataatcga gccagtaaaa ggtaagaaag      2040
     ggcgaaggat tgttttgcta gggttgtaca ttgattgttt tattacggac accaggtgcg      2100
     agtgattggg tgtcgccatt ggttactatt gttaaagata atggtgactt gcggctttgc      2160
     gtagatatgc gcagggcgaa tgaggctatc aaacgagagc accacatgat gcccactatc      2220
     gaggatttct tgccacgcct gaaagaggcg aaatttttca gccggttgga cattcgggag      2280
     tcgtattacc aaatggagct ggcggagcag agtcgtaaca taaccacctt catcacgcat      2340
     aagggtttgt ttagattcac gcgtttgatg ttcggcataa gttgcgcacc ggagatgttc      2400
     cagaagcatc tggaacaaat tctggtcggt tgcaacaaca cggtgaacta catagacgac      2460
     atcatcgttt ttggagcaac cgaagaggaa catgaccaag cgctgagtga agtgatgaag      2520
     gtactgaagg agagagacgt tctcctcaat cacgagaagt gtttgttcaa ggtgcaagag      2580
     ctggagttcc tgggtcatat aatctctgtc aacggaataa ggccgacggt cggtaagaca      2640
     gaagcgcttg agaagttccg ggaaccaaga tccgtcgaag aagtccgcag ttttttgggt      2700
     ctagttacct atggggggcg gttcctgccc aatctcgcaa caatcactgc tccacttcgt      2760
     gagctgcttc gtggagacaa acgatttacc tggacagccc aacacacagg atcgtttcag      2820
     aagctaaagg aaatgataag cgatatccga acgctgcaat tcttcgataa tacgctgcgc      2880
     acacggatta ttgcagacgc ttcgcctgtg gccctcgggg cagttttggt tcagttcgaa      2940
     gaccttcaca acatcaaccc ccgtatcatc agctatgcga gtaaaagtct gtcggacaca      3000
     gagaaacgtt actgccagac agagaaagag gctctcgctc tggtatgggc ggtggaacgt      3060
     ttcgatgtgt atctgatagg aagaacattc gagctggaaa ctgaccacaa accgctggag      3120
     tccatattct caccgacatc gaagccgtgc gcccggattg agcgctgggt gttacgtttg      3180
     caatcattca agtacagggt ggagtacaag agaggtcaga acaacattgc agattcgctt      3240
     tcgaggttgg tgcaggacga gacatcaggc gaggattttg agaaggagaa caagtttttg      3300
     atcctagcga tcaaggagtc agctgcggta gatgtagagg aggtagaacg tgcgtcgcgg      3360
     gaagatcgtc aactgcagtt agctgcacag tgcttgcggg atggaaagtg gggtaatcca      3420
     gaggtgaagg aatttgagat ttttcgcaac gaactcggat tgattggtga tctgctgata      3480
     agaggacaca tgctggtcgt tccgcatacg ctgaggaaca ggattctcag cctggctcac      3540
     gaaggacatc cgggcgagtc actgatggtt agtcgtttga gagatcgggt ctggtggcca      3600
     tccatggatc gcgaggcaaa ggcatggact aaagcgtgcg aaagctgcag gctggtcgga      3660
     ttacccggaa agcctgcccc gatggttcgc cgtccgatgc caacccaacc ttgggtcgac      3720
     gtggcgattg atttcatggg tccacttccg tcgaacgagt atctgttagt gataatagat      3780
     tactttagta gatacaaaga ggttgaagtg atgatcaaga taacggctaa agagactgtg      3840
     aaccgattgg acaaaatttt cacacgtctc gggtatccca gaacgatcac cctggataac      3900
     gccagacagt tcgtgagcaa ggacttcgat gactactgag acacccacgg catcaccctc      3960
     aatcacagta caccatactg gccgcaagaa aacgggctcg tggagagaca gaaccgatcg      4020
     ctgttgaaaa gattacagat cagtcatgct cttcatcgtg attggaagaa ggatctacat      4080
     gattatcttg ttatgtatta tacgacacca cacacaacaa cgggtaagac tccttctgag      4140
     ctgatgttcg ggagaacgat tagatccaag atgccatcag tgggtgacat cgaaacggct      4200
     cctgtgaaca ctgattattc tgatcgcgat tacattctga agcaaaagga gagagaggat      4260
     tgcagacgag gtgccaaaga ggtccaaatt caaccaggtg atacagttct tgtgaaaaac      4320
     ttactaccag gtaaaagtac tctgtattgg gttattcaag taacggtatc atacattaaa      4380
     aaaacaaatc taatatcgat cttattacag acaacaaact cacgacaacg ttcaatccga      4440
     cgaagttcac cgtagtagat cgctcaggtg gtcgagtcac cgtgtcggac caggagaacg      4500
     ggaaaaccta cgaacggaac gtggctcatc tcaagcgagt ggttgatccg ccagcagacc      4560
     tcggagaaca gttcgcggat tccgacacgg acggagaaga cttcagagga ttcgatcaaa      4620
     tcgaaattca ggagaagtcc cctccgaaag gaaagcgcac ccgccgttgc ccgaccaaat      4680
     ttaatgattt tgtgatgtga agaagataag catttccata aaaagggaga                 4730
//
ID   Gypsy-36_CQ-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   AAWU01012843;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_CQ_;
KW   Gypsy-36_CQ-I; Gypsy-36_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-163
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 452-452 (2011).
XX
DR   GenBank; AAWU01012843; Positions   93223   93385.
XX
SQ   Sequence 163 BP; 45 A; 43 C; 30 G; 45 T; 0 other;
     tgtggtaatg tgctgattct cgtgccaatt cataaacgtg caagcccact gggtcgtctc        60
     gctctcggca ctcgacgtgc gtaaataaac aatgtgctta aatctactcc gagttagtat       120
     tcatttcacg acgataatcc aactagtacc aaaccaccta tca                         163
//
ID   Gypsy-36_DAn-I repbase;    DNA;    INV; 4561 BP.
XX
AC   AAPP01015676;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DAn_;
KW   Gypsy-36_DAn-LTR; Gypsy-36_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4561
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015676; Positions  149354  144794.
XX
CC   Positions [3166-3639] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..4041
FT                 /product="Gypsy-36_DAn-I_1p"
FT                 /translation="MQTPRAPPTDGKVSHVTLPKFNPDSAGADASSWCSTV
FT                 DLIFADNVLEGSNLVIALSKALEGGASQWLSQICFAGITWAQFKELFIQRF
FT                 VGIETSAATLLSVLNGRPKPEEGFAEYGSRIVTLLMSKWKTKDLEEIAVSV
FT                 TLAHMAQIDNKLTHWIFTNNVKTRNELQQQLHAHSFKKRSMDDDSTGSERK
FT                 KYKFPTPMKCNYCGKGGHKYAECRARLEKGQSKGKIHSGSNVTGLKDRSSI
FT                 KCFKCDELGHFASACPKGRTYEKRVDICTVAPPTGIIRASGESVPFCFDSG
FT                 AECSLVKESVVDKFKGKRINNIVKLNGLSNDSICSTQQVLCNINIEQYCFE
FT                 ILLHVIMDKYLKYDVLVGREILSLGFGVTIDAEKFQIYKTKRVDVLTVTDY
FT                 KDILNADIDLVESDKMALTNILKCYSDWFISGIPKTRVSTGQLEINLIDPL
FT                 KTVQRRPYRLSEEEKNHVRCKINELLKANVIRPSSSPFASPMMLVKKKNGT
FT                 DRLCVDYRILNENTIADRYPLPLIADQIARLRGAKYFSSLDMASGFYQIPV
FT                 HENSIERTAFVTPEGQYEFLTMPFGLKNAPSVFQRAIIKALGTLAHTYAIV
FT                 YIDDVLVIAETKEEALERLRTVLETLSKAGFSFNVTKCSFLKTRIEYLGFE
FT                 ISNGEIRPNPRKIKALIDLPPPQSVSQLRQFIGLASYFRQFVPKFSETLKP
FT                 LYHLTSKKIATFTWLPEHEQIRTKIISVLTQAPVLIIFDPQYAIELHTDAS
FT                 SIGYGAILLHKIDKKPHVIEYYSKCTSPAESKYHSYELETLAVVNSIQYFR
FT                 HYLQGRKFVVYTDCNSLKASRTKLYLTPRVHRWWGFLQSFKFDLEYRKGER
FT                 MAHVDCLSRNPVPEKNNDQNKTPVENSGQNRIPEKRINLTEVTDNWLISEQ
FT                 QRDSEILEISTKLRNNELPDNLDKTYELRKGILHRKIQRNGKTKCLPVIPR
FT                 SFRWAIINHVHESIMHLGWEKTLDKVYSYYWFENMSKYVRRFVENCITCKL
FT                 SKPPVGKVQAELHSIPKIDIPWHTVHIDITGKLSGKNDLKEYVIVLIDAFT
FT                 KFVYFYHTLKIDTESCIKAVRSVVSLFGLPTRIIADQGRCFASSDFREFCS
FT                 SQKINLHLIATGASRANGQVERVMSTLKSMLTAVETGQRSWQDALAEVQLA
FT                 MNCTANRVTKFSPLELLIGKEARPFGLLPIDEEVDDKIDRENLRKEAKQNM
FT                 EDGARYDKRRFDSNKAKIVKHSLGDHVLLKNEERHQTKLDPKFKGPFEIVK
FT                 ILDGDRYLLKSLTSKRTYKYSHEFLRALPNNQLIHEDRDGMMENASDNEER
FT                 DS"
XX
SQ   Sequence 4561 BP; 1539 A; 778 C; 999 G; 1245 T; 0 other;
     tcagaagtgg gatctgcttt gcctactgat cgtgccaccg atccgtattt gttggcattg        60
     gagctgcaaa accgcaacct actggaaatc atcaaaaaca tgcagacacc aagggcaccg       120
     ccaaccgatg gaaaagtgtc acatgtaact cttccaaaat tcaatcctga cagtgctgga       180
     gcagatgctt cctcgtggtg ttcaacagtg gacctaattt ttgcggataa cgtgctcgag       240
     ggtagcaatc tggtgatcgc cctaagcaag gcactagaag gcggcgcatc acagtggctt       300
     tcccaaattt gctttgccgg catcacttgg gcgcagttca aggagctgtt tatacaacgc       360
     tttgttggaa ttgagacttc tgccgccacg ctattaagtg ttttgaatgg tcgaccaaag       420
     ccggaggagg gcttcgctga atacggtagc cgtattgtga cgctacttat gtcaaaatgg       480
     aaaaccaagg atttggaaga aatagcggta tctgtgactc tggctcacat ggcacaaata       540
     gataacaagt tgacacactg gatttttaca aacaacgtga aaactcgcaa tgagctacaa       600
     caacagctac acgcacactc tttcaaaaag cgcagcatgg acgacgattc aactggctcg       660
     gagcgcaaga agtacaagtt tccgaccccg atgaaatgta attactgtgg aaagggtggc       720
     cataaatacg ccgaatgccg tgctcgcttg gaaaagggcc agagcaaagg gaaaatccac       780
     agcggcagca acgtgactgg actgaaggat cggtcaagca ttaaatgctt caagtgcgac       840
     gaattgggac attttgcatc tgcttgtcca aaaggccgaa cgtatgagaa gcgggtagat       900
     atctgcacag tagctccacc gactggaata ataagggcat ccggtgagtc tgttccattt       960
     tgttttgatt cgggtgctga atgctcctta gtgaaggaaa gcgtcgtgga taaatttaag      1020
     ggaaaaagaa taaataacat tgtaaaactt aacggtttaa gtaatgattc catttgtagt      1080
     actcagcaag tattatgtaa tataaatatt gaacaatatt gctttgaaat tttgttacac      1140
     gtaattatgg ataagtatct gaaatacgat gtgttggttg gtcgtgaaat ccttagcttg      1200
     ggctttggag taacaataga cgccgaaaaa ttccaaattt ataaaacaaa aagggtagat      1260
     gttttgactg taactgatta caaagatatt ttaaatgcgg atattgattt agtcgaatcc      1320
     gataaaatgg ccttaacaaa tatcctaaag tgttactctg attggtttat cagcggtatt      1380
     ccaaaaactc gagtctcgac agggcagtta gaaattaatc taatagatcc actaaagacg      1440
     gtgcaacgac gtccttacag gctaagtgaa gaagagaaaa accatgtgcg ttgtaaaatt      1500
     aatgaattat tgaaagctaa tgttattcgt ccaagttcct cacctttcgc tagccctatg      1560
     atgttggtaa agaagaaaaa cggcactgat cgtctttgtg tggactatag gatattaaat      1620
     gagaatacca ttgctgatag gtatccgttg ccccttatcg cagaccagat tgccaggctt      1680
     cgcggtgcca aatatttttc gagcttagat atggctagtg gcttctacca aattccagta      1740
     catgaaaatt cgattgagcg aacagcgttt gtaacaccag aaggacagta cgagtttttg      1800
     accatgcctt ttggcttgaa aaatgcacct tctgtgttcc agagggccat aataaaggca      1860
     ttaggaaccc tagcacacac atatgctatc gtttatattg atgatgtgtt ggttatagcc      1920
     gaaaccaaag aagaggcgtt ggaacggttg cgtactgtgc tagaaacact aagtaaggcc      1980
     ggattttcgt ttaatgtaac taagtgctcc tttcttaaaa ctcgtataga gtatctgggg      2040
     ttcgaaataa gcaacgggga aattaggcca aacccacgta aaataaaagc attaattgat      2100
     ttaccgcctc cacaatctgt gtcgcagtta cgacaattta ttggattggc ttcatatttc      2160
     agacagttcg ttccaaaatt ttcggaaacg cttaagcctt tgtatcacct aacgtcaaag      2220
     aagattgcaa ctttcacctg gctaccagaa cacgagcaaa tacgaactaa aatcatatca      2280
     gtgttgacac aggcccccgt tttgatcata ttcgacccgc aatacgcaat agagttgcac      2340
     actgacgcca gttcaatcgg ctatggagct atattattgc acaaaattga caaaaaaccc      2400
     catgtcatcg agtattatag taaatgtacg tctcctgccg agtctaaata ccattcttat      2460
     gaattagaga cgctagcggt tgttaacagt atccaatatt tccgccatta cttgcaggga      2520
     cgtaaatttg tcgtatatac agattgcaat tcattgaagg ccagtcgcac aaaactttat      2580
     ttaacgccga gggtacatag gtggtgggga tttttgcaat cgtttaagtt cgacttagaa      2640
     tacagaaagg gtgaacgaat ggcgcacgta gattgtctat ctcggaatcc agtgcctgag      2700
     aaaaataatg atcaaaataa aacacctgtg gaaaatagtg gtcagaatag gatacctgag      2760
     aagcgaataa atctgactga ggtaaccgac aattggttaa tttcggaaca gcagcgtgat      2820
     agcgagattt tagaaatatc aactaaatta agaaataatg aattaccaga taatttagat      2880
     aaaacctacg aattacgtaa aggtattttg catagaaaaa tacagcgaaa tggtaaaact      2940
     aaatgtctac cggtaattcc aaggtcattt cggtgggcaa ttatcaatca tgtccacgaa      3000
     tcaataatgc atttgggttg ggaaaagaca ttggataagg tttatagcta ttattggttt      3060
     gaaaacatgt caaaatatgt gcgtcggttc gtagaaaact gtatcacttg taaattgtcg      3120
     aagccacctg taggaaaagt acaggcagag ttacattcta ttcctaaaat agatattccg      3180
     tggcacactg tacatattga cataacagga aaattgagtg gtaaaaacga cttaaaagaa      3240
     tatgttatcg tcttaataga cgcatttaca aaatttgttt atttttacca cactttgaaa      3300
     atagatacgg aaagttgtat taaggccgta agatcagttg tctctttatt tggcttgcct      3360
     acccgtatta tagcggatca aggtcgttgt tttgcaagtt cagattttcg tgagttttgt      3420
     tcttctcaaa aaattaattt gcatttaatt gccaccggtg cgagtagggc caacggtcag      3480
     gtcgagcgag taatgagcac actcaaaagt atgttgacgg ctgtggaaac cggtcagagg      3540
     tcgtggcagg atgcgttggc cgaggtgcaa ttggcaatga attgtacggc gaatagagtt      3600
     actaagttta gcccattaga attgttaatt ggtaaagaag ctagaccttt tggcttacta      3660
     ccaatagatg aggaagttga tgacaaaata gacagagaaa atctaagaaa agaagcaaaa      3720
     cagaatatgg aagacggcgc acgatatgat aagcgcaggt ttgatagtaa taaggcgaaa      3780
     attgttaaac atagtttagg cgatcatgtt ttgcttaaga acgaagagcg tcatcaaact      3840
     aagcttgacc ctaaatttaa agggccgttt gagattgtca aaatactaga tggagataga      3900
     tatctgttaa agtctttaac aagcaagcga acttacaaat attcccatga attcttaaga      3960
     gctttgccaa ataatcagtt aatacacgaa gacagagacg gcatgatgga aaatgcgtct      4020
     gacaatgaag aaagagattc ataaaaaaaa gggggggggg ggcataaatt aacgtataga      4080
     gatattctga aaaagaattt aatgttattg taaagtgtta aaggaactac actaatttta      4140
     ttttaatgtg ttaaaggaac tacacaaatg ttaaaaagtg ttaaaggaac tacacaaatg      4200
     ttaaaaagtg ttaaaggaac tacactaatg ttatatcgta agacgtgtaa aaggaattac      4260
     acaattgtta aaatgtgcca aaggaaatgc acaaaggttt tattttacaa aagagaataa      4320
     tgttattaaa gaataacaaa atgaattaat aagattatgt ttaattgaag aaatgtaatg      4380
     aatacagaag atttgatatt tatgtaagtg atttttattt ttgaaagctt ttgtccaata      4440
     catgaagtaa aaagaaagaa aagaaatatc tgtttaagaa taaagaaaag tttaaagaga      4500
     aattgagtct cgtggtattg aaaacaaaac acacgaggac gtgtgagttg tcaggaaacc      4560
     g                                                                      4561
//
ID   Gypsy-36_DAn-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   AAPP01015676;
XX
DT   26-OCT-2011 (Rel. 17.03, Created)
DT   26-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DAn_;
KW   Gypsy-36_DAn-LTR; Gypsy-36_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-347
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (26-OCT-2011).
XX
DR   Genome; AAPP01015676; Positions  144793  144447.
XX
SQ   Sequence 347 BP; 88 A; 64 C; 104 G; 91 T; 0 other;
     tgtcgtagaa tggttagttt gcccattgta catgtgcgta cagctttggt gtggcgacac        60
     attgtctagt agttgtgcgt catgtgcgta cagctttggt gtggcgacac attgtctagt       120
     agtgttagaa tgcacagtag ctgaggaaaa gggacacact ctgctgctga gcatggtctg       180
     gtcggagagc gcggactgaa tgcaagtaac cgagatggca atagactttg cagaaatgag       240
     acagaactct gggttacgca ggtcagtttg gatgcgtctc ttgcaacgag cagaacttgc       300
     tgtgcagaca gactagaaaa atggaatctt tggaggaatc tccgtca                     347
//
ID   Gypsy-36_DEl-I repbase;    DNA;    INV; 7294 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DEl-I.
XX
NM   Gypsy-36_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7294
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 477-477 (2012).
XX
RN   [2]
RP   1-7294
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 7294 BP; 2675 A; 1456 C; 1295 G; 1852 T; 16 other;
     ggcgcccaaa cgagtaaaac gcaagcmcgt aaaaataaaa aaatwatata aacaaatttt        60
     tgtaaaaaac kcaatcagaa acctgtgcwg gaataactca aaaattgcaa ttaataaaag       120
     ctcacctttt tgtgtggaaa aaaatattaa acaaaaaagt taagcaacaa caaattctgt       180
     aacccgtaaa aataaaaaaa ttataaaaaa gaattgtaaa aaactcaatc agaaacctgt       240
     gcgggaataa ctcaaaaatt gcaattaata aaagctcact tttttgtgtg gaaaaaaaag       300
     attagcaagc aagccgcaga cctctaagaa aaaataaatc tktgaaaaaa aactcaatca       360
     gaaacctgtg cgagaataac tcaaaaattg cgattaatga aagctcactt tttttgtgaa       420
     aaaagagata aacaaaaaat ctattttttt tgtgtgaaca aaaggcttaa acaaaagcta       480
     ctaaacaaca aaaaaaattc tggaaactag ctgcaagacg cagccgtcga ataaaaaata       540
     aatctttaaa gaaaaaaaca actcaatcag aaatctcaac caaaaacctg tgcaactata       600
     attaaaaaat tgcagttaac acctcaaaac aaaatttatt aaacaacaac cttctggaga       660
     atagctgtag gggagggccc tcgctattta catcatcttc aaggaaacag aacctggtgg       720
     atgggcaaat cgtagcctta agaaggaaaa ttagaatctt taacggaaat catgtaagtg       780
     aacttttcgt gaaaccattt aaattattcg gactttcctt gagagttaaa atttttataa       840
     aaatattcag attactttaa aaaaaagtta tcacattgag aatacaacat ttttgcttat       900
     caatcaagta caaaaataaa taatttctat tcgtcttatc tgtgaattac aaactaaaat       960
     ttttttgtgt gcgcaaaagt ctatgtcaaa ttctgagaaa aatccaatat tctcgcggtg      1020
     gagagatagg aaatcagatc cagatggcag cgaggaagag ggacttgcat taaaaacaga      1080
     aaccacwgaa aataagatat taaaagaatt agatgaggag ctattaaaag cctacaagaa      1140
     gtktactgtc acaaaagata cagagtcaga agagcataaa atgtcgaccg atcaatggaa      1200
     acagatgttt gaggtagctg tacagacagc actttatcaa caagctcagt tattcgaagc      1260
     aaaaattaaa gaactctctg aacagataaa ggggttaaaa gtcacgccac ccacagtaga      1320
     agtgtatgaa caaatctcta taatagaagg aataaaatgc gatgaacctt tagacatcgt      1380
     aaaatctttg ccggcaagca ggaacaatat atttcgtggc gacaatcagc cacagtggta      1440
     tatgaggtat ttaaaccatt tgaaggtagt tcaaaacact atcaagcatt agctattata      1500
     aggcaaaaag taagaggaag taaggctatc atagccagat tagactttac ctatgcggat      1560
     aagaccccca tacaggtgat tcagcaagaa cttaacctta tgcggcaggg cgacttgctc      1620
     ttgacaaagt attatgacga aaccaaaaaa aaacttactt tgttaacaaa ccaaaacgat      1680
     gatgtctcat gatactgcag cttcgacatt cctgaacgaa aaatacagga gcgacgcact      1740
     gcatacctgt attttaggtt taaaaaacta tctaaaaatg acagtttttc cagcaaaacc      1800
     aaaagatctg cccactgccc tcgcattggc acaagaggca cagtccagcc atgaacgcag      1860
     tgtatttgca gccagcgtgt atgaacaaat ctctataata gaaggaataa aatgcgatga      1920
     acctttagac atcgtaaaat ctttgccgga atttgacggc aagcaggaac aatatatttc      1980
     gtggcgacaa tcagccacag tggcatatga ggtatttaaa ccatttgaag gtagttcaaa      2040
     acactatcaa gcagtagcta ttataaggca caaaataaga ggatcggctg atgccgtcct      2100
     agcctccttt aatactgttt tgaattttaa ggctatcata gccagattag actttaccta      2160
     tgcggataag acgcccatac aggtgattca acaagaactt aaccttatgc ggcagggcga      2220
     cttgcccttg acaaagtatt atgacgaaat cgaaaaaaaa cttactttgt taacaaacaa      2280
     aacgctgatg tctcatgata ctgcagcttc gacagtcctg aacgaaaaat acaggagcga      2340
     cgcactgcat accttatttc agggttgaaa aactctctaa aaatgcagtt tttccagcaa      2400
     aaccaaaaga tctgcccact gccctcgcat tggcacaaga ggcacagtct agccatgaac      2460
     gcagtgtatt tgcagccacc tttgcaaggc acgctgacga aaattgggaa aacccccaat      2520
     taaaaatact attggcggca aagccagaat tcaaaacaac cacattttaa cccagaaaac      2580
     gctagttaca ggcaccgaaa ctttacacaa aaaaaatcag ggtcaatcag taccagaacc      2640
     aatggaagtt gatccctcct cacggtcccg gcaaacgaca aattcctaca aaggatataa      2700
     gggaaatgtc ctgagtaaca gacaaaaggt aaataccaca actcaggaac aggaatacac      2760
     cgaagactat gagatacagg ctcaagacaa tatagaggaa ctcgaggatg atttactccc      2820
     aaccgaagac tgtaattttt tagaggggag tccctgcttc cgtatataag tcgaaggata      2880
     gcggggaaaa tgattcgact tctaatagat acaggtgcat cgaaaaacta cataaaacct      2940
     ttgcctggtc tgacacacat aaaaaacgtg gaggaacctt ttatggtctc atcccttcat      3000
     ggctccacta aaatggaaaa aaaatgtaaa ataaacctat ttaacgaaaa ttcgtatttt      3060
     tttatttttg aaaaccttaa ggaattcgat ggcattgttg gtctagatca tttaaagaaa      3120
     gtaaatgctc gaattgacct tagtaccggt aggattgaac ataattcagg atcggaagat      3180
     ttgcaatttg ctaaatataa agaattttaa ctttaattaa attaatttta tcactttaaa      3240
     tgtcgatgat gtccccaatg cggttagaaa agaatttaat ttaatgatca ctaagagggc      3300
     tggggcattc gcagacccta atcaagccct accatataat ataaacacga ttgcaactat      3360
     ccgctctgac ggggaacccg tgttttctaa gctataccct tacccaatgg gcgtatctga      3420
     atttgtcaat gcagaggtta aacaacttct agcagacggt atcatcagaa aatcacgatc      3480
     accttacaac aatcccgtgt gggttgttga taaaaaaagg ccacgatgaa agtggcaaca      3540
     agaaaaaaaa aacgcctcgt tatcgatttt tggaaactaa ataaaaaatc gattgacgat      3600
     aaatacccta tccctagtat ttctactata ctggcaaaat tgggaaaggc ccagtatttt      3660
     acaacattgg accttaaatc aggttttcac aaaatcgagt tggaatgttt ttaacggctc      3720
     tgtaacggta tgagttctgt agattacatt ttggactcaa gaatgcaccc agcattttcc      3780
     aaagggcaat cgacgatgtt ctacgggaac aaatatcaaa gacatgctac gtgtacgtcg      3840
     atgatgtcat catcttctct aaaactaaag aagatcatat tagggacata aactgggttc      3900
     ttaaaagctt acatgaagct ggcatgaggg tatctcagga aaagtctaag ttcttcaaaa      3960
     ggagcgtaga atacttggga ttcattgtgt catgcgcagg acttacaacg tccccagata      4020
     aagtaaaggc aatcgaagcc ttccaagcac ctacttcact ttatagccta agatcatttt      4080
     tgggtctctg cagctattat agatgtttta taaaaggctt tgccacaatc gcaagacccc      4140
     taacggagat cttaaaaggc gaaaatggta aagtcagcgc aaatcaatca agaaaaatca      4200
     aaattgagtt atcacccaaa caactagaat catttgaaaa tcttaaacaa attctagcgt      4260
     cagaagacgt ggttctagca taccccgatt ttagcaaacc ttttgaccta acaacggacg      4320
     cttccgcgaa cggcttaggg gctgtgttgt cacaggaaaa tcgtccaata acctggatct      4380
     ccagaacaat cagggacaac gaaatgcatt tcgccactaa tgagcgtgaa cttctagcca      4440
     ttgtatgggc gcttaaaaac ctgagaaatt atttgtatgg ggtaagaaaa ttaaacattt      4500
     atactgacca tcaacctctg acgtatgcag tatccgaaaa aaatacgaat gcccttataa      4560
     aacgctggaa atcttttatt gacgaccata acgcaaacat tttctataaa ccaggcaaac      4620
     aaaatgttgt agccgatgcc ctctcacgac aaaacgcgaa tcccttacag gacaactccg      4680
     aatctgatat cgctaccatt catagcgaag attcactcac gtacactata gagtcaatag      4740
     ataaaccagt aaattgtttc cgtaatcaga taatcattga agaagcagac ttcccatcta      4800
     cgagaacctt tattctattc aaagaaaaaa accgacatat tattcgattt tccgaaattt      4860
     ctactataat aaaggcagat gtcgttaatg ccattcattg caaattccta ataacagata      4920
     ttcctgacca atcagaacaa aaggaaatag taattttgga acataataga gcccatcgag      4980
     cagctcaaga aaacgttaam cagattctga gagactattt tttcccaaaa atgcttcggc      5040
     tagcaacaga ggtgacactt aattgtamaa tttgctctat ggcatataca gccgtcaccc      5100
     tacaaggcaa acagtcggcc aaackccgat accatgttat ccaagagaaa ttctccatat      5160
     agacatattt tcaacagatg gaaaactctt tctcacatgt attgatamat tttctaagtt      5220
     cgctattgta catccgatcg catcgagagt tatcgtggat gtaaaatccc caattttaaa      5280
     tattgtgaat ttttttcaat cacacaaaca atttactgcg acaatgaaag atcattaaac      5340
     tccgagacta ttaagtcaat attattaaat aatttcaata ttaacattgc aaatgcaccc      5400
     ccttgcacag cacctcgaac ggacaggtcg aaagattcca cggcaccctt gctgaaatag      5460
     cgctttgcct aaaaatcgaa aaagaaatga acgacaccaa ggcggttgtc ttgctgccac      5520
     aamtaaatac aatagaacta tccactcagt tactaataaa acgcctatag aaacaataca      5580
     ctctagatct tcagagttcg aaaccgagat tagtacaaaa attcaacaag cccaggaaaa      5640
     aagcttagac caaataaaca aaaacaggac ttacaaaagt tatcaggtcg gcgacaaggt      5700
     tttcttgaaw tcaaataaac gcctggggaa taaactatcg cccctatgct cggaggaagt      5760
     aattgaagca gaccttggga cgacwgttct tattaaaggg agggtggtcc ataaggacaa      5820
     tttaaaataa cgatcttcta gacctaattk taaatttaga tttttgttct ttccttcttt      5880
     cttgttttag gttaacgctt tgcactttta ttctgactat gaccttttcg acatccggac      5940
     tacatactgt taatggatag agacgttcgs acaatctggg aggaatttgg gtatctcgga      6000
     cactccacta atattacttc atatgaactt tacgcactcg aaacaaagac tacaattgac      6060
     gcttttacac aggaccacat gagacgaata ttgactgtgg acgtcggacg gatagattct      6120
     ttggtgggta ctttaagagt tcatcatagg aatgcacgca gcattaacat gttaggatca      6180
     gccctaaagg caattgcagg taacccagac ttcgaggact gggaacaggt caaatttaaa      6240
     cagaatcaat taattgaatc acagactaat caggtagcgg caactcgttt aaacaaatta      6300
     ccaaagcaat aaacgcaatt tacaaatcag acgaaataga caaaagccac cttttcgaaa      6360
     taatcttggc caaaaatata attataataa atgatctgga aaatttaata ttctcaataa      6420
     cattggcaaa agtaaactta ataagcccag caattctgga tgaaattgat atcaaagaaa      6480
     ttaatcacga aaggctcaca aattttagca ttactgatct tttagaagta tcccagataa      6540
     aagcatttca aaataatgat ataatacact tcctcataaa ataccccaaa cctaatttag      6600
     tatgtaagaa aatttctatt tacccaatac aacatagtaa taggattcta gactttgggg      6660
     aggacaactt agtcgctgat tgtggtagaa agtcgtttgc catccaccag tgtgacgctt      6720
     caattggaac aacgttctgc agaaaatctg attcctcaac atgcgcccaa gaattagttt      6780
     ccggaaccgt cgccaagtgc agcaccattc caggccacct cagtccaata acaacaatcg      6840
     acgacggaat actaattatt aacgatgctg ctgcgaaact tcaacacgac gacagcccta      6900
     aaaaccttcc taggggcaca tatctggtaa ccttcgacga ctacgttatg gtaaacaaga      6960
     ccctctttaa aaaccactat ggcatactga agaagaaacc tgcagtatcg atggtgaccc      7020
     acgttaatat cacgggccac aaagaacaac tgagcctgcc tttccttcac gagctaagcc      7080
     tgaaaaatct tcaacacatc gagcgtctta aagaagaaat tctaacgaag ccactcttaa      7140
     ctagcggtat tactttggtg atcattctgg tgtgcctctt cgtcacctat caactccatc      7200
     gacgttgcgt tcgtagccgc cagagcaagt tgacagctgt actaaaatct acgctgaaga      7260
     agtccgagga cagccttaac ttaaaggagg gagg                                  7294
//
ID   Gypsy-36_DEl-LTR repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DEl-I;
KW   Gypsy-36_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-478
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3100-3100 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus. AG-CT termini.
XX
SQ   Sequence 478 BP; 151 A; 103 C; 107 G; 116 T; 1 other;
     agttagcatg gaacccaaag gtgttgcaag accggatgca attctccaaa tcagcggtct        60
     ataagaataa aacccgagtc gctgagtggt aggggcacga ggcgctaagt caggtcccac       120
     gctagcccgc tgaccaaggc ggaaaagtaa tgcagcgggc tatgcagcgg atgcgaagta       180
     caaggttagc actctgccca tagcgctgcc gtcaattctg ctcgtcgctg ccgacgtcgg       240
     gccttctgcc cggctttctt ggagaacatt taagttagca ttagttatta gttcttaaca       300
     gactcgaaag gaatccaaac ggattcccgg ataaatttaa taacaataaa cgggagtaat       360
     tccataaata aaactatagt tatccaaacg gatttctaat taatgtcaat caacgaacgg       420
     gagtaattcc aataaataaa gattataaat tctaacgaaa watagtcttg tctttact         478
//
ID   Gypsy-36_DWil-I repbase;    DNA;    INV; 5346 BP.
XX
AC   scaffold_181150;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DWil_;
KW   Gypsy-36_DWil-LTR; Gypsy-36_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5346
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181150; Positions 4248662 4254007.
XX
CC   Positions [2757-3263] - Reverse transcriptase
CC   Positions [4326-4802] - Integrase core
CC   'GTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..1593
FT                 /product="Gypsy-36_DWil-I_1p"
FT                 /translation="MDINIEAHNLPTLKKWLELLDLPTTGSKAELVARLND
FT                 VPVDRRGACSISIGTETVEESTEDESNRQLSETTNEKEGDNNTDVLLKKLC
FT                 DLLRPQLFDIVAPQRQTENETHDSVPTSNDSGSENEMAAELIGAQNQRHEP
FT                 VLVNQRSEEVLESGFSSAAKFQLAKEALLEFNGNSCGKKWVTQLTNISGVY
FT                 GIKGVQMHMLLVSKLKGRAHEWLHANSTRILEPVGNICEQLVESFGKTVSQ
FT                 ADARRLFESRIWSANESFVSYIDEKARLSDAICISEEERVDKAIEGIPVEG
FT                 LRIQAQIQGFKCIAELRRAFSGIQLPVQRAARETTKVAATGRRSKEGFRCY
FT                 NCNSKGHMSKDCKKPDRVPGSCFGCGALDHWVAKCPLNKEKLAKGCDDVRF
FT                 VKIYFKTPTNPYLITACFIDSGSDVSLIKISCLPEKIHLISLNHKYYGLNK
FT                 SPLLSYGKVKCFVFKNSIKVFFHLIVVDNESMSHEVILGRDFMKACNIKLD
FT                 LNALKMVTIERKEGENELGERSEFES"
FT   CDS           1995..5195
FT                 /product="Gypsy-36_DWil-I_2p"
FT                 /translation="MSHEVILGRDFMKACNIKLDLNALKMVTIERKEGENE
FT                 LGERSEFESLSLQTCHTDLQIARNVNVVRTVDEIVKTKNCKNRIVTKECNP
FT                 KREDEEIVSEIVKRDDSEIVSEMVNEIDSKIVSETENGDRSKMVTKSRNEA
FT                 VIELVSEKFRSDRKCEERKETADVQSLSEVEFELLNIECFNTGVDCKIGER
FT                 LDFKIRERFEQLFERSYLVAQRPELPDVKCEMKLNVEGSKAFSCAPRRLSY
FT                 SEKGKLQAMLDGYLEKKIIRPSESEYASPIVLVPKKAGELRLCIDFRRLNK
FT                 VLVKDNYPIPLIDDLLDKLGDKRFFSKLDLKDGYFHVFMEENSVKYTSFVT
FT                 PLGQFEFLRMPMGLKNSSSVFQRFVNKIFTDMIRDNKVIVYQDDIMVASRT
FT                 AEEHLDILKEVFRRIIRNKLELRIDKCEFFQSSIRYLGFIISEEGIRADDK
FT                 GLEAVKNFPIPTNVHTVRSFLGLASYFRRFIRNFSLIAKPLYDLLKKDRVF
FT                 KFGKEELDCFSLLKDKLVESPVLAIYNHKDEVELHCDASALGFGAMLMQRK
FT                 EDKKLHPVFYYSKRTSDVESKYHSFELETLAIVYAVRRFRVYLQGRYFKVL
FT                 TDCNSLTLTLNRIELNPRIARWALELQNYDYEVVHRAGKQMQHVDALSRCT
FT                 NILVVDTNSFEDNLVICQNRDEKLQTIKRKLEFSEDKLFEMRNGIIYRKTN
FT                 DGRLLFCVPSEMEESILFKYHNELGHIGRDKVMDAISKTYWFPNIKEKVVK
FT                 HISNCLKCVAYSPKSGKEEGMLHSIPKGNRPFELIHIDHCGPIASGRSKKH
FT                 LFVIIDGFTKFVRLYPTKTTNTKEAVLALKDYFRAYSRPFAIVSDRGSSFT
FT                 SSEFEMFVTQNNVKHIKIATGSPQANGQIERVNRTLGPMLAKLSEPEKGIY
FT                 WDLIVENVEHCLNNTLHRSIKQLPSKMLFGVEQKGKVADELREGLEQLGIV
FT                 NDQKNLDTIRKDGEIHQKQSQKYNEQQYNSKRVAPTGYKAGDYIMVKNFDS
FT                 TIGASKKLIPKHKGPYVIDKVLKNDRFLIKDVEGFQLSRNPYQGVWSSHNI
FT                 KHWIGKRKSD"
XX
SQ   Sequence 5346 BP; 1806 A; 835 C; 1260 G; 1429 T; 16 other;
     atatcagaag tggtgaactt taacgcaatg gacatcaaca ttgaggctca caatttgcca        60
     actttaaaga agtggttgga gctattggac ttgcctacaa cagggtcaaa ggccgagctt       120
     gtggcgcgct taaacgatgt tccagtggat cgacgaggag cttgttccat atctattgga       180
     actgagactg tcgaggaaag tacagaagac gaaagtaacc gtcaactgtc agagaccaca       240
     aatgagaaag agggagacaa caacactgat gtcttgctaa aaaaattgtg cgatttactg       300
     cgtccacaat tgttcgacat agtggcgcct caacgccaga cagaaaacga aacgcacgat       360
     tcagtgccaa cgagcaacga cagcggcagc gaaaacgaga tggcagcaga actgattggc       420
     gcgcaaaacc agcgtcatga accagtgttg gtaaatcaac gctcggagga ggtgttggaa       480
     agcggttttt cgtcggctgc aaaattccaa ttagcaaaag aagcgttgtt ggaatttaat       540
     gggaactcgt gtggaaagaa atgggtcacg cagctgacaa acataagcgg tgtatatgga       600
     atcaaaggtg tacaaatgca catgcttcta gtctccaagc ttaaaggacg ggctcatgag       660
     tggttacatg ccaatagtac gcgcattttg gaacccgtgg gcaacatctg tgagcagctc       720
     gtcgagtcgt tcgggaaaac tgtgtctcaa gcagatgcca ggcgcttatt cgagtctcga       780
     atttggagcg ccaatgagag tttcgtcagt tacatcgatg agaaggccag gctgtcagat       840
     gctatctgca tcagcgaaga ggagcgagta gacaaagcca ttgaagggat tcctgtggag       900
     ggactccgca ttcaagcgca gattcaagga ttcaaatgca ttgcagaatt acgccgtgca       960
     ttttcaggca ttcagctacc ggtacagcga gcagcaagag aaactacaaa ggtggccgct      1020
     acgggcagac gttccaaaga aggtttccgt tgctacaact gcaactcgaa gggccacatg      1080
     agcaaggact gtaagaaacc cgacagagtg ccagggtcct gtttcggatg cggtgccttg      1140
     gatcattggg tggctaagtg tccacttaat aaggagaagc tggctaaagg atgcgacgac      1200
     gtaagatttg ttaagatata ttttaaaaca ccaactaatc cttacttgat tacagcatgc      1260
     ttcatagact caggcagtga tgtttcactt attaaaatct catgtttacc agaaaagata      1320
     catttaattt cacttaatca taaatattat ggattaaata agagtccact tttgtcatat      1380
     ggaaaagtca aatgttttgt tttcaaaaat tcaataaaag tattctttca tttaatagta      1440
     gtcgataatg agtctatgag ccatgaagta attttgggaa gagattttat gaaagcttgt      1500
     aatattaagt tagacttaaa tgccttgaaa atggttacga ttgaaaggaa agaaggcgaa      1560
     aatgaacttg gagagcggtc ggagtttgag tcctnnnnnn nnnnnnnnnn gccacatgag      1620
     caaggactgt aagaaacccg acagagtgcc cagggtcctg tttcggatgc ggtgccttgg      1680
     atcattgggt ggctaagtgt ccacttaata aggagaagct ggctaaagga tgcgacgacg      1740
     taagatttgt taagatatat tttaaaacac caactaatcc ttacttgatt acagcatgct      1800
     tcatagactc aggcagtgat gtttcactta ttaaaatctc atgtttacca gaaaagatac      1860
     atttaatttc acttaatcat aaatattatg gattaaataa gagtccactt ttgtcatatg      1920
     gaaaagtcaa atgttttgtt ttcaaaaatt caataaaagt attctttcat ttaatagtag      1980
     tcgataatga gtctatgagc catgaagtaa ttttgggaag agattttatg aaagcttgta      2040
     atattaagtt agacttaaat gccttgaaaa tggttacgat tgaaaggaaa gaaggcgaaa      2100
     atgaacttgg agagcggtcg gagtttgagt ccttgtcatt gcagacatgc catacagatt      2160
     tgcaaatagc tagaaatgta aatgttgtga gaacagttga tgaaatagtt aaaacaaaaa      2220
     attgtaagaa tagaatagtc acgaaagaat gtaaccccaa aagggaagac gaggaaattg      2280
     ttagtgaaat agttaagagg gatgatagcg agattgttag cgaaatggtg aatgaaattg      2340
     atagcaagat tgttagtgaa acagagaatg gagatagaag caaaatggtt acgaaaagta      2400
     ggaatgaagc tgttattgag ttggtcagtg aaaaatttag atctgataga aaatgtgaag      2460
     agagaaaaga aactgctgat gtccagtctc taagcgaagt agaatttgaa ttattaaata      2520
     tcgagtgttt caacactgga gttgattgca aaataggtga aagattagat tttaaaatcc      2580
     gggaaaggtt tgagcaattg tttgagagat catatttggt agcacaaagg cctgaattgc      2640
     ctgatgtaaa atgtgaaatg aagctcaacg tggaagggtc gaaggcattc agttgtgcgc      2700
     ctagaagatt gtcatattct gagaaaggga aattgcaggc gatgttagac gggtacttgg      2760
     agaagaagat cattcgccct agtgagtcgg agtatgcatc acccattgtg ttagtgccta      2820
     aaaaagctgg cgagctaagg ttgtgcattg actttagaag attgaacaaa gttttggtta      2880
     aagataacta ccctatacct ctgatagacg atttattaga caagcttggc gacaaacgat      2940
     ttttttctaa attggatcta aaagatggct attttcacgt gttcatggag gaaaactcag      3000
     ttaaatatac atctttcgtc actccgttag gccagtttga gttcctcagg atgccaatgg      3060
     gtctgaaaaa ctcctcatca gtgtttcaaa gatttgttaa caaaattttt acagatatga      3120
     ttagagataa taaagtaata gtgtatcaag acgatatcat ggtggccagt agaactgccg      3180
     aagagcacct ggatatactg aaagaagttt ttagaaggat aatcagaaac aagctggaat      3240
     tgcgtataga taagtgtgag ttttttcagt ccagcattag atacttggga tttatcatat      3300
     cggaggaggg aattagagcc gatgacaagg gcctagaggc ggttaagaac tttcccatac      3360
     caacaaatgt tcacacagta agaagtttct tgggattggc ttcttatttt cgtcgtttta      3420
     ttagaaattt ttcgttaatt gcaaaaccac tctatgacct attgaagaaa gatagggtgt      3480
     ttaaatttgg aaaggaagag ctagattgtt tttcgttgct caaagataaa ttagtagaat      3540
     cgccggtgtt ggcaatatat aaccacaagg acgaagtaga gctgcattgt gatgcgagcg      3600
     cgttaggctt tggggcaatg ttaatgcaaa ggaaagaaga caaaaaactg caccctgttt      3660
     tttattactc aaaacggacg tctgatgtag aatcaaagta ccacagtttc gaattagaga      3720
     ccttggcaat agtatatgca gtccgcaggt tcagagtgta tttacaggga agatatttta      3780
     aagtacttac agattgtaat tcactgactc tcactctcaa tcgaattgaa ttaaacccaa      3840
     gaattgcgag atgggctctt gagctacaga attatgatta tgaagtagtg cacagggcag      3900
     gtaaacagat gcaacatgta gatgcgctta gtagatgtac gaacatactt gttgtagata      3960
     caaatagttt tgaagacaat cttgttatat gccagaacag ggacgagaag ttgcagacaa      4020
     taaaaagaaa gttggaattt tctgaggata aattatttga aatgagaaac ggaataattt      4080
     acaggaaaac caatgacggg aggttgttgt tttgtgtacc gagtgaaatg gaagagtcaa      4140
     tccttttcaa gtatcataac gaactaggtc atatcggcag agataaagta atggatgcca      4200
     tttcgaaaac gtattggttt cctaacatta aggagaaagt tgtgaaacac attagcaatt      4260
     gcttaaagtg tgttgcgtat tctccaaagt ctggaaaaga ggaaggaatg ttgcacagta      4320
     ttcctaaagg gaatcggccc tttgagctaa ttcacattga tcattgtggt cctatagcat      4380
     caggcagaag caaaaagcac ttgtttgtta ttattgatgg ttttacgaaa ttcgtcagac      4440
     tatatccaac aaagacgacg aatactaaag aagcggtgct agctcttaaa gactatttta      4500
     gggcctacag tcgacccttt gccatagtat cggatagagg aagcagtttc acctcatcag      4560
     agttcgagat gtttgtaact cagaataacg ttaagcacat taagattgcc acaggttccc      4620
     ctcaagctaa tggccaaatt gagagggtaa atcgtacact gggacctatg cttgctaaat      4680
     tatcggaacc agagaagggt atatattggg atttgatagt tgagaatgtt gaacattgtt      4740
     taaataacac acttcatagg agcattaagc agttgccgag caaaatgctc tttggagtag      4800
     agcaaaaagg caaagtcgca gatgagttaa gagaaggact agagcagtta ggaatagtga      4860
     atgatcaaaa aaatttggat acaatcagaa aggatgggga aatacatcag aagcaaagcc      4920
     agaagtacaa tgaacagcag tataatagca aaagggtagc acccacagga tacaaggcag      4980
     gggattatat tatggtgaag aatttcgatt caactatagg agcgtcgaaa aagctcattc      5040
     caaaacacaa agggccttat gtgatagaca aggttctcaa aaatgaccga tttttaatta      5100
     aggatgtgga aggttttcag ctcagtcgta acccttatca aggtgtttgg agtagccaca      5160
     atataaaaca ttggataggt aaaagaaaaa gtgactaaaa gttatgaatt aagcaaatga      5220
     aaataatgaa aactgtaata aacttttatg taatgtacct taactaattt gtagttataa      5280
     gatttcaact tattgtaacg ttaattatgt aaggatcagg agatcttacg gtcaggacgg      5340
     ccgagt                                                                 5346
//
ID   Gypsy-36_DWil-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   scaffold_181150;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_DWil_;
KW   Gypsy-36_DWil-I; Gypsy-36_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-295
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181150; Positions 4248367 4248661.
XX
SQ   Sequence 295 BP; 107 A; 51 C; 53 G; 84 T; 0 other;
     tgtagcagga gagacggtca cacttgctct cttgctactc ttcgatcccg gtattttaat        60
     tgactctccg agagagagaa aagtttagcg ggtctgacgt gtgagtcagt cgttgctgag       120
     cgttgaggag tgtaagacaa atatcgagga aacattaatt atatctaata aataataacc       180
     ataataaata ataataaaaa caattaagaa ataaataaac tattattaat ctaaagaaac       240
     taaaacccga atctcctaaa tattctggca ttggttaatt tatctgccgc ccaca            295
//
ID   Gypsy-36_HeAr-I repbase;    DNA;    INV; 4223 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4223
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5583-5583 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4160
FT                 /product="Gypsy-36_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPIGKIEPFNLNSKQWPAYIRRVNQYIKLNEVEDDLK
FT                 VSLLITVVGEETYALMCDLCSPDFPETKKYDELVELVKGHLEPQRSEIAER
FT                 HIFRLRRQRVGESLTEYLQALKHLASTCNFGKCQSCSTLQENLRDQFVSGL
FT                 SNDVMRSRIFAEKKIEYKEAVELALALEAAEKHAEVSGTTAATAGTDSSGT
FT                 ASGEAGEGLHYARGGQGGSRGRGRPPRGPGAGTGSTGANTSSAGAGGNGAE
FT                 ASGSRARTCWRCGKAHMADRCRFKNYNCDVCGKRGHLKVMCKLVSDQSGRQ
FT                 NYLSEESDDGMFNIEVAAQGNRPYFIKLSVDNTNVEFEIDTGSRISAISEE
FT                 MYQRMFSHKEITSDNLILRCYSGSRIESLGYIEVNVNLGLVSAKGLRLYVI
FT                 RKGARPLLGREWMRTLKITQITLNEVIDDDIINKLRNEFPEVFCDKLGTCK
FT                 QPIRLQLSDNEPVYVRARPVPLALRTRVERELERLEADGSVYRVDYSDYGT
FT                 PIVPVVKENGEIRICGDYKITINPKLKRDYYPLPRIEELFATLSGGEKFTK
FT                 IDLKHAYEQCLLSEDSQVYTAITTHMGTYVYRRTPYGLSCIPEKFQKIMEE
FT                 TLRGVPGCVVFLDDICVTGSNKLEHIKNLRAVLERLRNMGLTVKLSKCRFL
FT                 QDEVKYLGFIINKEGLRPDPQKLEAISNVPKPENVSQLKSFLGMLNYYGRF
FT                 IPRLSTLLQPLHNLLKKDVSWKWDSGCDNAFSEAKRSLLSERVLAHYEEGR
FT                 DLVLSVDSSAYGLGAVLAHRYADGSERPVSCVSRTLNASERNYSQLDKEAL
FT                 AILFGVTKHHQYLFGRRFTLRTDHQPLTHIFGEKGGIPQTAASRLQRWAAR
FT                 LAAYDFRIEFVRSADNGPADALSRLPLSQEGRFADTIEYLYLVEDSLPVNC
FT                 ADVAKETERDKLLCKIKGYVLFGWPSVPSCEAEKPYFSRKQDLVVNQGCII
FT                 YKYRIVVPYVLQKKILQEIHEGHLGINKMKSLSRNYIYWASLDSDIEEVCR
FT                 SCTACRMVRDAPPRAQLHPWEFPLHPWQRVHADFGDCGGVRYLIIVDAHSK
FT                 WIEAVPMRSTNALSTIQVFRSIFARFGLPAQLVTDNGPPFSSQEFKQYCEN
FT                 NCIKHTTSAPYRPQGNGAAENAVKTVKKAIKRALYENEDVNAALSKFLFQY
FT                 RNCEHATTGVSPAVALQGRRLRSRLDVLRPDVAAVVRAKQERQVARNAGTD
FT                 RHFNVGDAVLARNYSARGEKWTEATVVKKTGPVSYTVDIGKGLEWRRHADQ
FT                 IISKNRYSLSRMSLSGVEQKPHPQQVVEMGAEGEVFEDASSGDGEAGEAPV
FT                 VTGQEPTPQTQSPPGAAPVSPEPNLAPTPAPPGASARAVRAYHRAKRSGRS
FT                 LLN"
XX
SQ   Sequence 4223 BP; 1200 A; 828 C; 1138 G; 1057 T; 0 other;
     ttggcgacga gctaatttgg aatcctatta cgcgtgttac gagtgatttt aagactacaa        60
     aaatgccgat tggaaaaatt gaaccattta acttaaattc caaacagtgg cccgcgtata       120
     tacgtcgagt caaccaatac ataaaactaa atgaagttga agatgatctg aaggtgtcct       180
     tgttaattac ggtggtgggc gaagaaacgt acgcgttgat gtgtgatttg tgttcacctg       240
     atttcccgga gacgaaaaag tatgatgagt tagtggaatt agtcaaagga catttagaac       300
     cacaacgctc agaaattgcc gaacgccata tttttagatt gcggcgacaa cgtgttggtg       360
     aatcactcac agagtatctt caagctttaa aacatctagc gtctacatgt aactttggca       420
     agtgtcagtc atgttcaacg ttacaagaga atctacgtga tcaatttgta tcgggactat       480
     ctaatgacgt gatgcgttcg aggatctttg cggagaagaa aattgaatat aaggaagcgg       540
     tggagctagc tttggcgcta gaggctgcag agaaacatgc ggaagtgagt ggcaccacgg       600
     cagcgacggc agggacggac tcatcgggga cagcgagcgg ggaggcgggc gagggcctgc       660
     actacgcgcg cggcggccaa gggggctcgc gcgggcgcgg tcgtccgcca cgaggtcctg       720
     gcgcaggcac aggcagcacg ggcgcgaaca ccagcagcgc aggggcaggt gggaacggcg       780
     cggaagcctc gggctcgcgc gcgcggacct gctggcgctg tggcaaggcg cacatggctg       840
     ataggtgcag attcaaaaat tacaattgtg atgtgtgtgg caaacgcggg catcttaaag       900
     tgatgtgcaa gctagtgagt gatcaaagtg gccgacaaaa ttatctcagt gaggagtcgg       960
     atgatggtat gttcaatata gaagtggcgg ctcaaggtaa cagaccatat tttattaaac      1020
     tatcggtgga caatacgaat gtcgaatttg aaattgacac gggtagtcgt atctcggcta      1080
     tcagtgaaga aatgtatcaa cgtatgtttt cacataaaga aatcacttca gataatttaa      1140
     tattacgttg ttattcaggt tcacggattg aatcattagg ctacattgaa gttaatgtta      1200
     atttaggtct agtaagtgct aaaggtttgc gtctttatgt tatcagaaag ggggcacgcc      1260
     cgttattggg acgggaatgg atgcgtactt taaaaatcac acaaattaca cttaatgagg      1320
     ttattgatga tgatattata aataaattgc gtaatgagtt ccccgaagta ttttgtgaca      1380
     agctaggtac ttgcaagcag cccattcgac tacagctgtc tgataacgaa ccggtttatg      1440
     ttagagcgcg gccggtgcca ctggcgcttc gcacacgagt tgaaagagaa ttagaacgtt      1500
     tagaggcgga tggttccgta tatcgcgtag attattctga ttatgggact cctatcgtac      1560
     cggtggttaa agaaaatggc gaaattcgta tttgtggaga ctacaaaatc acaattaacc      1620
     caaaactaaa aagagattat taccctttgc cacgtataga agaattgttt gcaaccctaa      1680
     gtggggggga aaagtttact aagattgatt tgaaacatgc gtacgagcag tgcctcttat      1740
     cagaggattc acaagtatat accgccataa ccacacatat gggaacttat gtatacagac      1800
     gtaccccata tgggttgtcg tgcattccag agaaatttca gaaaataatg gaagaaactc      1860
     tgcgcggagt gccagggtgc gtggtatttt tagacgacat ctgtgtaacg ggatctaata      1920
     agctagaaca tattaagaat ctgagagctg tactcgaaag gttgcgtaat atgggactca      1980
     ctgtaaagtt aagtaaatgc cggtttctac aggatgaggt taagtatttg ggctttatta      2040
     taaataagga gggtttgcgg ccggatccac aaaaactcga ggctatttct aacgtgccaa      2100
     aaccggagaa tgtatcgcaa cttaaaagtt ttttgggaat gttaaattat tatggtcgtt      2160
     tcattccccg gttgagcaca ttactacaac ccttacataa tttattaaaa aaagatgtta      2220
     gctggaaatg ggactccggt tgtgataatg ctttcagtga ggccaagcga tcgctcttga      2280
     gtgagagggt attagcacac tatgaggagg ggcgcgactt ggtgctgtcg gtagacagta      2340
     gcgcgtatgg actgggtgcc gtgctggcgc accgctacgc agatggcagc gaacggccag      2400
     tcagctgtgt ttcgcgaaca ctcaatgcat ccgagcgcaa ttatagccaa cttgataaag      2460
     aggctttggc tatcttattt ggtgtaacaa aacatcacca atatttattt gggaggcgat      2520
     ttacactgcg cactgaccac caaccgctta cgcatatttt tggggaaaag ggcggcatcc      2580
     cgcagacggc tgctagtcgt ttacaaagat gggcagcacg tctggctgcg tatgattttc      2640
     gtattgaatt tgttcgatca gcggacaacg gtccggctga tgctttgtcg cgactaccgt      2700
     tatctcagga gggtcgcttc gctgacacta tagaatactt atatttagtg gaggattcac      2760
     tgcctgttaa ttgtgccgat gttgctaaag agacggaacg cgataagtta ttatgtaaga      2820
     ttaaaggtta tgtgcttttt ggttggccat cggtaccgag ctgtgaggcg gaaaagccgt      2880
     atttttctag gaaacaggat ttagtagtta atcagggttg tataatttat aaatatagaa      2940
     ttgtagtacc gtacgtctta caaaaaaaaa tattacaaga aatccatgaa ggccatctag      3000
     gcataaacaa aatgaaaagc ttgtcacgga attatattta ttgggctagt ttggatagtg      3060
     atatagagga ggtgtgtagg tcgtgcacgg cgtgtcgtat ggtgcgagac gcgccaccgc      3120
     gtgcgcagct tcacccgtgg gagtttccat tgcacccgtg gcagcgtgta cacgcggact      3180
     ttggtgattg cggtggagtg cggtatttga taatagtaga cgcgcattcc aaatggattg      3240
     aggctgttcc aatgcgtagt acgaatgcac tatctaccat tcaagtcttt agaagtattt      3300
     ttgcacggtt cggtttgcca gcacagctcg tgactgacaa tggaccacct ttctcgtctc      3360
     aagaatttaa gcaatattgt gaaaataatt gtatcaaaca cacaacttcg gctccgtata      3420
     gaccccaggg aaacggcgcg gccgaaaacg cggttaaaac tgtaaaaaaa gctataaaac      3480
     gagcactata tgaaaacgaa gacgtcaacg ccgcgctgtc aaaatttctt ttccaatata      3540
     ggaattgcga gcacgccaca acgggagtgt ctccggcagt ggcattacaa ggccggaggc      3600
     tgcgtagtcg gctggacgta ctacgaccgg atgtcgcggc cgtggtgcgc gccaagcagg      3660
     aacggcaggt ggcacgtaat gccggtactg acagacattt taatgttggc gatgcagtgc      3720
     tagctcgcaa ttattcagca aggggggaaa agtggacgga agcaactgta gtaaaaaaga      3780
     cgggtccggt atcatataca gtagatattg gtaagggttt agaatggcgt cgtcacgccg      3840
     accagataat tagtaaaaat agatactcat tatcgcgaat gagtctatcg ggcgtagaac      3900
     agaaaccgca tccccagcaa gtagtagaga tgggagccga aggtgaggtg tttgaagacg      3960
     catccagcgg tgacggtgaa gcgggggagg caccggttgt aacgggacag gaacccaccc      4020
     cgcagacgca gtcaccgccc ggggccgcgc cggtgtcgcc cgagcctaac ttagcgccaa      4080
     ccccggcacc gcctggtgcg tctgctcgag cagtgcgagc gtaccacaga gccaaacgaa      4140
     gtggccggtc attgttaaat taattaagtt acttggtttg aaaatctatt acttatgtat      4200
     tcgaaaactt agtgagggag aag                                              4223
//
ID   Gypsy-36_HeAr-LTR repbase;    DNA;    INV; 101 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-101
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5613-5613 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 101 BP; 24 A; 18 C; 23 G; 36 T; 0 other;
     tgtggcgttc ttagatgtaa taaatatagg tggtgggtag tttaatcttt taggtcaata        60
     aaccagtctg tcgctaatcg ctgcctttca ttgacgctcc a                           101
//
ID   Gypsy-36_LMi-I repbase;    DNA;    INV; 5454 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5454
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(177..935,856..1104,1047..2300,2246..2635,
FT                 2813..4252,4134..4619,4697..4867,4848..5234)
FT                 /product="Gypsy-36_LMi-I_1p"
FT                 /translation="MSMDKQTVAKEGPTVQDATTLEAIQSLVNQVAQLKND
FT                 NNRLMQQIGNARQEGTILPSLDSSAATLVTPFSGKPGEDVTAFFDDLLAAA
FT                 KLGLWSDEQLLQMTKLHLVGEAKAHVLYNEELRNALTFDKLRKGLLKRFQR
FT                 QNSGRFYREKLNAISQRQNESLESYVDRIRRVNVNTYQLTDNDMVNKVILQ
FT                 EAESRALNTFLRGLPAEMSRRVRAEFPKSLDEAISVATAFEEIDVATRAKE
FT                 RRNVFPAGGTMFQQLSRKLMLQHGRRNGVMFSQREVRCFRCDRQGHIAKNC
FT                 RLPQCRLCHRVGHSDRDCRAGRDNDRRRPLNGNGGPRTAVSGSRQKEAVKW
FT                 QWGSKNRRLGLPLNFHAVKTHAKADCWILGTMGDRTLKFVIDTGADVSIIS
FT                 GKYVVSRECRPPRFKLSGVGGIGVRSLGCTTLVFSVNGTQFQETVEVVSRI
FT                 SDGYDAILGLDFLNKHHAIIDLGQQTVQLDGVLFPLGGTAAKDLPLQDSPK
FT                 RKEESPKLQAMPLRIGSRDKVPLGTGKVFWVDVHTVLPXDTLCLIEPLAAN
FT                 EELDTAHCFVRRSIVKIEEIDGVKKVPVLVDNFGTEDRELTKGILLATIST
FT                 FEEEDFDWSERETMGNPTAYKTAMRQKIAHLKGSDRDKIEAVLNEYQELFN
FT                 TQGPLPATTITQHRIPTGNSPPIYKKPYRVARHLQPLLDEFIEQQLRDGII
FT                 EYSDSPYSANIVIVPKKSTDGTKRYRFCCDYRHLNSQTVSDVYPLPNITDI
FT                 SIVSDGVRCLSTAEYYRHIDSLGSSRYFSTIDLAVATISWRWQKKTGTKQH
FT                 FPRLVGTGNTGDALGLKNAPATFQRLLDGVLRGLKTRECCVYLDDIIVFAK
FT                 DIEEHATRLRRVFQRLREARLTLNLEKCNLLPLTQLLKKGAKFQWTAECDA
FT                 AFQTLKQKLVTSPVLAYPDFSKEFILSCDASGHSVGVVLSQNVDGAEHPIA
FT                 YASRQLTTAERNYSTTEKELLSVIYGIKYFRCYLYGRKFKVVTDHAALKWL
FT                 LGLRDPSSRLIRWSLCLSEMDFEVIHKPGKKHTNADGLSRKVAFVEAMGRT
FT                 AEEWQRAQARDPECQKYASQKQFCKEDGVLCRKTRLGPRIVVPANLRQEVM
FT                 REAHDHVLSGHGGQRTTERRVAERFWWRTRKQDVVQYVRNCVECARRADLS
FT                 RQKAPLQRLPEASAPFSLIGADIYGPFHKTPAGNKYVLTIIDHFSRYLAMV
FT                 SLPDQQASTIAQALVNNWILKFGVPEAIISDQGSNFMADVLRQLCQLLKIK
FT                 KLRTTPLHPQANGRTERVHRTIGKMLSYYINEQHNNWEMYLPMVVSCYNAK
FT                 THEATGLSPYEVVYGRKMPSPFDVLRQKGGKVGERFLEDNEKGMVQSTESK
FT                 HCTEGRCHHLSMYYGKKEEKSVRDFSKIMKKVWSRVQKANTKALERQERLG
FT                 NAGARHPDYKVGQWVMLSTPYVAKGKTKKLVSNYRGPYQIVGVTSPVNVRL
FT                 QLPTRTSVVHVNRLRPFKGTIDVLPPPVVPVDKGNARRRKQDQLAVPRRRQ
FT                 GGPYNLRGISYITLIVLFQGAPSSVMELHRISVAVGLMFCLVEVPLRIKPL
FT                 SLHVQSREIIFIYLHPFSFTCIHDWLYYMNISYPLVYWPDTTLQILPQQNL
FT                 TFLNDSLDPEILKSLDHFISTQQSRIDANAIIQHVLQLKQERKTKIIMLST
FT                 SISGSFFLLILLCVGFLFCKRKKNESNNGPVHQIPVDWLQMST"
XX
SQ   Sequence 5454 BP; 1632 A; 991 C; 1418 G; 1411 T; 2 other;
     tttggtgtca gaaaagagct caactcggtg agaaggtggg aatggagtag ttggttaaaa        60
     taattggaaa gggaagcttt agtaatttgt ttgggtttga tcagtggtat agccagttca       120
     ataagtttct tatagtaata cgccttcatt tttgttttgt tgttattctt ataagtatga       180
     gtatggataa gcaaaccgtt gcaaaggagg gtccaacagt acaggacgct acaacgttag       240
     aggcaattca aagtttagtt aaccaggtgg cacagttgaa aaatgataat aatagactga       300
     tgcaacagat aggtaatgct cggcaagaag gcacaattct gccctccctc gattcttctg       360
     cagccacttt ggtaactcct ttttctggca aacctgggga agatgtcacg gccttttttg       420
     acgatttatt ggcagcagct aaattaggat tgtggtctga cgagcagctg ttgcaaatga       480
     caaaattgca tctggtaggg gaggctaagg cgcatgttct gtacaatgag gaattaagaa       540
     atgcattaac ttttgacaaa ttaagaaagg gattgttaaa gaggttccaa aggcagaata       600
     gtggtagatt ttatagggag aaattgaacg ctattagtca gcgtcaaaat gagtcgctgg       660
     aaagttatgt agataggatt aggagggtta atgtcaacac ataccagtta actgataatg       720
     acatggtaaa taaggtcatt ttacaggagg cggaaagtag ggcgctcaat acttttttgc       780
     gggggctgcc agctgaaatg tcacgccgcg tgagagcgga attccctaaa tctttggatg       840
     aagccatctc tgtagcaaca gctttcgagg aaattgatgt tgcaacacgg gcgaaggaac       900
     ggcgtaatgt tttcccagcg ggaggtacga tgttttaggt gtgaccggca gggtcacatt       960
     gcaaaaaatt gcaggttacc acagtgtaga ctgtgtcaca gagtgggaca ctcggacagg      1020
     gattgtaggg caggacggga taatgacaga aggaggccgt taaatggcaa tgggggtcca      1080
     agaaccgccg tctcgggctc ccgttaaact tccatgcagt aaaaacgcac gcaaaggcgg      1140
     attgttggat attagggaca atgggggatc ggacgttaaa atttgtaata gatacgggtg      1200
     ccgatgtttc aattatcagt ggcaagtatg ttgtaagtag ggagtgtcgc cctcccaggt      1260
     ttaagttaag tggagttgga ggtattgggg tacgatcact agggtgtacc acgttggtgt      1320
     tttcagttaa tggtacgcaa tttcaggaaa cggtagaagt ggtgtcaaga ataagtgacg      1380
     ggtatgacgc gattctggga cttgactttc tcaataaaca tcacgctata atcgatctcg      1440
     gtcagcaaac ggtgcaactt gatggggtct tatttccatt aggtggcaca gctgcaaagg      1500
     acttaccgct gcaagattct ccgaagcgca aggaagaatc acctaaactg caagcgatgc      1560
     ccttgagaat aggttcgcgt gataaagtac ctttgggtac agggaaggtg ttctgggtag      1620
     atgtgcatac cgtcttacct scggatacat tgtgtttaat agagcctcta gcggcgaacg      1680
     aggaattaga tacggcacac tgttttgtgc ggagaagcat agtaaagatt gaggagatag      1740
     atggggtcaa aaaagtaccg gtacttgtag ataattttgg aacggaagat agagagttga      1800
     cgaagggaat attgttggcg acaattagta cgtttgagga ggaagatttt gactggtccg      1860
     agagggaaac catgggaaat ccaacagcct ataaaactgc gatgcgccag aaaattgcac      1920
     atttaaaagg aagtgatagg gataaaattg aagccgtttt aaatgaatat caggaactgt      1980
     tcaatacaca ggggccgttg ccagcaacga ccattacgca acatagaatt ccgacgggta      2040
     acagcccacc gatttataag aaaccttata gggtggcgcg acacttgcaa ccgttgctgg      2100
     acgaatttat tgagcagcaa ttacgggatg ggattataga gtattctgat tccccataca      2160
     gtgcgaatat agtaatagtg cctaagaagt caactgatgg gacaaaacgg tataggtttt      2220
     gctgcgacta tagacacctg aatagtcaga cggtgtcaga tgtttatcca ctgccgaata      2280
     ttacagacat atcgatagtt taggcagtag taggtacttt tctacgatcg atttggcagt      2340
     ggctaccatc agttggaggt ggcagaagaa gacaggcaca aaacagcatt ttccacgcct      2400
     ggtgggcact ggcaatacag gagatgccct tgggttaaaa aacgctcctg ctacgttcca      2460
     gagattgctg gatggggtgt tgcgaggatt gaagacacgg gaatgctgtg tctatttaga      2520
     tgatataatt gtattcgcta aggatattga agagcatgca actcggttgc gtagagtgtt      2580
     ccagaggctt agggaggcca ggttaacgct aaatttggag aaatgcaatt tgctttgaag      2640
     gaggttactt atttagggca cgtgattagt gaacagggtt aagacagatc cacgtctgat      2700
     aacagcagtt acagattttc cagtaccaca acgcattaag gaggtgcaat ctttcgtcgg      2760
     gcttacaagc tactatcgtc gatttgtaaa aaaaatttct gagatagcat gacccttgac      2820
     gcagttgcta aagaaggggg ccaagtttca atggacggca gaatgtgatg cagctttcca      2880
     gacattgaaa caaaaactcg taacgagccc agtcttggcg tatccagact ttagtaaaga      2940
     attcatttta tcgtgtgatg cgagtggcca ttcggtgggt gtggtgttat cacaaaatgt      3000
     ggatggggcg gaacatccga tagcttatgc ctcccggcag ttgacgacgg cagagcgaaa      3060
     ttattcaaca actgaaaaag agttgcttag cgttatatac ggaattaagt attttcgatg      3120
     ctacttatac ggaagaaaat ttaaggtggt gacggatcac gctgcattaa aatggctcct      3180
     tggcttacgc gatccatcta gccggttaat ccgctggtcg ctgtgtttgt cagagatgga      3240
     ttttgaagtg atccacaagc caggaaagaa acatacgaat gcagatggcc taagtaggaa      3300
     agtggcattc gtagaggcaa tgggaaggac tgcggaagag tggcagagag cacaggcaag      3360
     agatcctgag tgtcagaagt atgcctctca gaagcagttt tgcaaggaag acggagtttt      3420
     atgtcgtaag accagacttg ggcccagaat agtggtacct gcaaacctca gacaagaggt      3480
     aatgagggag gcacatgatc atgtcctgtc cggacacggt ggacagagga ccacggagag      3540
     acgagtggca gaaaggtttt ggtggcgcac caggaagcaa gatgtggtcc agtacgttcg      3600
     aaactgtgtg gagtgcgcgc ggcgtgcaga cttgagccgc cagaaggcac ctttacaacg      3660
     attaccggaa gcctcagctc cattttccct aattggagcc gacatctacg ggccatttca      3720
     caaaacacca gccggtaaca agtatgtcct gacgattata gatcattttt ctcgttacct      3780
     agcaatggtg agtcttccag accagcaagc cagtacgatt gcacaagcac tcgtaaataa      3840
     ctggatactt aaatttggag taccagaggc tattatttcg gaccaaggct caaatttcat      3900
     ggccgacgtg ctcaggcagc tctgtcagct attgaagata aaaaagctgc gcacaacacc      3960
     tctgcatcca caggcaaacg ggcggacaga gagggtacac cgaacaatcg gtaaaatgct      4020
     cagctattac atcaatgagc agcacaataa ctgggaaatg tacttgccga tggttgtgtc      4080
     ctgctacaat gcaaagacgc acgaggcaac gggtttgtcg ccctatgagg tagtgtacgg      4140
     aaggaagatg ccatcacctt tcgatgtatt acggcaaaaa ggaggaaaag tcggtgagag      4200
     atttctcgaa gataatgaaa aaggtatggt ccagagtaca gaaagcaaac actaaggcgc      4260
     tggagcgaca ggaaaggctg gggaatgcag gagcaagaca tccggactat aaagtcgggc      4320
     aatgggtcat gctatccacg ccttacgtgg cgaagggaaa gacaaaaaag ttagtttcta      4380
     attatcgagg gccttatcaa attgtgggag tgacgtcgcc agtaaatgta agattgcaat      4440
     tgccaacacg aacgtcagtt gtgcacgtaa ataggttaag accttttaag gggacaattg      4500
     atgttttacc tccaccagta gtacctgttg ataaaggaaa tgcaaggcgt cggaaacagg      4560
     atcagttagc ggttccaagg aggaggcaag ggggtccata caatttacga gggattagtt      4620
     aaattatcta agataaatta atacggtagt gttttttttt cctttcctct tctttctttt      4680
     gtttatttca gcttagtaca taacattaat tgttcttttt cagggagcac cgtctagcgt      4740
     gatggagctt cacaggatat cagtagcagt aggattaatg ttctgcttag ttgaagtgcc      4800
     attaagaatc aaaccactat cacttcatgt gcaatcacgg gaaataattt tcatttacct      4860
     gcatccatga ctggctatat tacatgaaca tatcataccc tcttgtttac tggcctgaca      4920
     cgaccctaca gatattacca caacaaaacc taaccttcct taacgattca ctcgatccgg      4980
     aaatcctcaa atctttagat cacttcatca gcacccagca gagcagaatt gatgccaatg      5040
     ccattatcca acatgtattg cagcttaaac aagaaagaaa gacgaaaatt ataatgttga      5100
     gcactagtat ttctggttcc ttttttctgt tgatactcct ttgcgtaggt tttcttttct      5160
     gtaagcgtaa gaagaatgag agtaacaacg gccctgtcca tcagatcccg gtagactggt      5220
     tacaaatgtc gacataatac ataggtatat gaaataaatt agttattgtc acaagaatgt      5280
     atttaatgat tttgttttct cttcgatatt tttgactgta ataatatctg tgtagtgctt      5340
     acgaggcaag tggtgtctgt ttaaaattcg ggatgaattt tccctggggg tggaggaatg      5400
     taggagatag ggagaatata gacatataat atgaaaaagt waacaagtgg tgag            5454
//
ID   Gypsy-36_LMi-LTR repbase;    DNA;    INV; 1129 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1129
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 1129 BP; 284 A; 296 C; 341 G; 208 T; 0 other;
     tgaactttaa cgcagaagtt gaacatggaa gcggtgctgt gttgaaagca ggcgtgtgac        60
     aaagtagagc gggacaagca cgtttatgat ttcagcaaat aaagtggagc ggctcggcga       120
     agcttcggtg atgcaagtag gtcggcgagg gtgccgtact gcgtaacagc cgacagctgt       180
     attgcttaaa ggcgtggctg ggacatacgt gatcggaagt aggagaccgg tcacgtgtag       240
     caaagatcag ctatgccaca cttgtgaaac acaggccgac ggggtcaacc tcatcgtata       300
     aatacaggcg aaaaagacaa gtcgcagtca gtcagccacg gcagagagag agcagccacg       360
     gctggcagtc acctgccgcc cggactgtgc tactcgtcga caacagttgt tattattgtt       420
     atcgcaaaac tgagtctgtc gcaggctgga agcacttcga cgcagcgggc cagcagccga       480
     tcatcatgat caacacggca tccctgacgg gagatgcagc ctgcggaata gcggcggcac       540
     agcctgatgc aacgggcagt ggggtcccgg cctcgacagc agcgcaaccg ggcgtcgaac       600
     caacgcatgg cgtggtaaga ctgcagccaa ggcgttactc acccaggggc gtggtgtgga       660
     cgaaaggacg cggccacacc tgaagcgctc ctgtgaccgt ctggagggcg aagcagcagc       720
     agcgggagaa ggaggacctg ggttcaactc ccgggcagcg cagtatggcc atcgtggcgg       780
     tggcgcgggg cagtgcgagg atgatacctc gccttacgca acacagaggc gtagcggcca       840
     gcagcgtcag ctactacgag gctcgtggcg tcagctggac gccacctcag cgcgatacag       900
     tgcacacgca cactccactc gcctccagcc gtttgtaagc atgagtgtca ataaactgtt       960
     ttgttatact ggaccactgt ttcattgcca ccccatctcc cgagttgagt actgagctca      1020
     cagcccacat ggaatgaact agtgtagcta tcctgactag acgaagtctg tgtgtagaac      1080
     attcgtcatt tggtgtcaaa accatcaaat agtgcccaga cacattaca                  1129
//
ID   Gypsy-36_MoPha-I repbase;    DNA;    INV; 11649 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-11649
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1114-1114 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1347..2717
FT                 /product="Gypsy-36_MoPha-I_1p"
FT                 /translation="MNPDDLIDEKETLDYKEMIKELKQRESELKYRTEAIE
FT                 GMMRTLTNALSGLHLPQPSTSTPNEQPNENPASPFLPPQTSYATLNMTPAS
FT                 YSINSPYPKSYIRDALDLVPKYDGHNIPVWQFARACKRARDSIPSVDEAHF
FT                 VRLLRNKLNHHAYLAVEDETHLTVDKFLDTLKRTFGPGRSSNYYRGQLSIV
FT                 YKKPSEHILDYIGRIKDLRTAIIEGDQTNLNRSLTEPETSSIDSFTLEAFY
FT                 EGLPREYRVELKAEGYHNLTDACSKVITISKRLEREEARERNSRPARSDAA
FT                 PTRTLPPTRILQRDDSSTNNAGSPYNNREQKICGYCKNFGHLVHECRKRQY
FT                 HESTSGNNNNNNRNNYNNYNGNYNNNNNRPRNSNSNNNTTPNGVVKISENQ
FT                 PEASANGTHRGLGKARPVLPLDYSQNPSTSYEPPAEAYPPSSSNHRPSMDQ
FT                 PLSCSIQEHSQT"
FT   CDS           2513..7177
FT                 /product="Gypsy-36_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NFGKPARGLGQWDAPRSWKGSSRSSLGLLPKPVYILR
FT                 AASGSVPSVELESPSFYGPTAFMLDTGAQPNIIKQGCLQRKIEVNNQEILQ
FT                 LTGITEDAVNTLGSIQVQIFNILVTFHVVPDDFPIIQQGILGTSFFTEHNA
FT                 CIDYSNSTVTWHNCAIPFKEQETVVIPPRTNTGFVIRVSNPEIKTGYLPRL
FT                 HICDGVFAGDSLVTCINNKAYIRIINTLDRKIEVIIPTIKLREVTEISNEP
FT                 KNASKTNSLNSDQADLHSSQLLESSASIKSTSFEAKQNKITNRQESLFLTS
FT                 NYGISPAPSSSNSNFNNTTTSFTNSNTPSSAARTCSLMGSFSRAECMRPHE
FT                 KPFSSAKCTHSHSGSSNLTSSHFPSPLVPYKPEKEKVMINNIKENDTDYNK
FT                 KETVINKIASVKENMEKEDSKRVTWTMAERISAVLKLLRLDHLVPFEKENV
FT                 ITLVTNYCDRFYIPNEYLDKTQLLTHKIITTDDAPVHTKQYRFPPIHRTEI
FT                 TQQVNQLIDRDVIIPSTSPYNSPIWIVPKKPDSSGNKRWRMVIDYRKLNEK
FT                 TIGDAYPLPNICDILDQLGGSKYFSVLDLASGFHQIPMDPMDAHKTAFSTP
FT                 HGHYQFARMPFGLKNAPATFQRLMDQVLSGLQGIELFVYMDDIVIYASSLR
FT                 EHDIKIDKLMSRLRSANLTLQPDKCEFLRREVSYLGHIIGEDGVRPDPQKI
FT                 SAVEKFPAPRNIKNIRQFLGLAGYYRRFIPQFSSIASPLSNLLKKDVQFIW
FT                 NDKTQHAFDTLRKLLCNEPILQFPDFEREFILTTDASNFAIGGVLSQGEIN
FT                 HDLPIAYASRVLNSAEKNYSTIEKELLAITYCVNHFRPYLYGRTFTLITDH
FT                 QPLTWLHRVKDPTSRLMRWRLKLEEFDYKIVYKKGISNSNADALSRNPVAI
FT                 NLIHYSIMPIRKKPRLDSAILSSSESDDTSESDDERSRKQPAGARVDVRDM
FT                 TTPVAPTSCGNSEDSPIPKLIIRLRRNEPPVVLPAPTEPISSQYELRTGRK
FT                 TNFEEFFHEEESDRDSLPDLESPADSPAKSPNTSNNETPDQLLDSTPTISP
FT                 DISLSSNCKIQESPLPLLSRTDNLIILITGNGHPLCDGAQELLQANNLPPP
FT                 DDLALGRARVHFSWHRDRHVIMLPVKERRTTPLDEQILDECLTSLLDVVSE
FT                 LDLRTLSIRLTAQLDSVSWSTMVQKLQSTMIDRPITITICKGITSIPLEKD
FT                 RIKIINEHHESAVGGHKGVTKTYRLIKKRYSWPNMKTQIQDVIRRCHTCQL
FT                 RKLVRKKTRQPMILTDTPDHAFDKIALDIVGPLKTTNDGNTYILTMQDLLT
FT                 KYSVYAPLSNISAESTATAFVNYFICRFGCPRSILTDQGRNFMSQLMKSIT
FT                 KKFRIQQLRTTAYYPQSNGSLERSHMVLMEYLRCFVRKENDWDKFIERASF
FT                 SYNTSVHEGTGFTPHELIFGSPARIPSEFNSDPEPETYGNRLMKVFSEIRD
FT                 LQRNAKENLDKAKQKSKTYYDKRVNAIIINPGDSVFLINNLKTNKFATEYL
FT                 GPYKVVEVMDHENVRLEINGTTRVVHTNKLKRAYPRNAG"
FT   CDS           7435..9000
FT                 /product="Gypsy-36_MoPha-I_3p"
FT                 /translation="MDIKILTVTILIRCTHALIGYDCSGSHTNSTLISLLE
FT                 IEECRIPEGKVITETVPIRLLELPETTHVSVLSCRFEIENIIRNNEKIKRN
FT                 RFYLSCNLADCAYLHAHKRFRVGNITFDKLKTNVVNSRLLPPSNHAHFFLP
FT                 TSPKTGIKNVESYIHIAFNQNKIKVNTLKNKITLPHGICEYSTLHCVDEEG
FT                 YHNYWSPIFHDGCHTSPNIVVHRGNATKIYSDARPIAYLVPFADKNLLVFV
FT                 RERQDICNTTVLQTEYPRLIITMENITTPTNPVPYDQPHPVTDPTTSYHIT
FT                 SCISETPKSAYIKALLDKCEKERIALQIAAHTALWDPDQFAYTITGRPGHS
FT                 AHIQGEAALVYRCTPVPVQIRTTDTCYKQLPIIANGAPGYLAPRTRVISAF
FT                 GTEVECNSEEAIIFRLGNIWTQFQPHRRNVTTSTLPGLNYLPWGSPPLKTE
FT                 YEVAGKVTLDNAQQSTPLEQDTSYIQRQLYKICWITISLISLALIVRQRCY
FT                 RRKKSLVNCQELGLTATSKLSCIQSA"
XX
SQ   Sequence 11649 BP; 3800 A; 2685 C; 1990 G; 3174 T; 0 other;
     aattggtgac agcggtggga tagtttcaga taaaggtctg aaacaccccc agttatcgtc        60
     agataatctc tgaggaagat tcctcaagta gactcttctt ttcccgcccc gcgccgttgg       120
     gatctgttca cttccttttg tctctacgca ttaaagcgca ctcatgtgcc ccattcatcc       180
     gtgtaccttg aaggccccct tctttttcgc acctcatgtg cctaccacat atgaaagatg       240
     gattgccacc gctctctgtg tagggtcaat cttctatcaa catcgtactg ataaaaattt       300
     cttgctatgt gacaactgct accttcaaac ctccgaggag acccgtagtg tgcattacgt       360
     tcttaaactt cgtcattaca ttcatatagg gtttaataaa cacgtcgaaa ggtgtgcctt       420
     gtgtcgcgta tcactagcca cccccagcgc cttgcgaaat tgtcgcgatt gtccccgaat       480
     cctttcactc tttactcacc acgtggagag tcacggagaa gcaccacacg aagactctga       540
     cgccacgata ataacaatct ctgagaaaac tctgtaaaat atcaccttct attccgcgtt       600
     ttattaacgt tgagcccaca aagcttacga tagtatacta cgcgctccag aacgcagata       660
     tattaattac ataataaaat taacaataaa tcggttattc taagtccact taaaacttgg       720
     ggtacgtttt taccccactc tgccgtttga ccttttcaaa cactctacac gcgcaaatcc       780
     agagcgtaat gttcaagaag ggaagctctt aatattaatt cctttcctat taacgaaacc       840
     tttacgtgtg gcggcaaaat cgtaccatcg aaaagaagta acaattaatc tctccctttg       900
     gtttactccc ccatcctggt cgtacaaaat aaaacccgat aatacagata aatccacgca       960
     tgtacattta ctcgtactca ctacaacaaa aataaaacag cggattgcga agataaatat      1020
     tttatttaat ctcgcacata aatttaagca attctgctgc tctaaatttt cctctcgggc      1080
     ttcattatca aatagtacca tatgatgagc cataaaatgc cgtacaattt cgtgtgcata      1140
     attgcccgac ggtagtaata ccattatcat tggtattaca aatactatta tcatttacta      1200
     tcctcataat ttatcaattg tcaattcgat atatatatat atattaactc gcataaccct      1260
     cagcatatcc attattataa aaagctgaaa agattatcag atagcatccg cgttttaaat      1320
     tacacgtacg attactatca ataaaaatga atcccgacga cctaattgac gagaaagaaa      1380
     ctctcgatta taaagaaatg ataaaggagc tgaagcaaag agagagcgaa ttaaaatatc      1440
     gcaccgaagc gatcgaaggt atgatgagaa cgcttactaa cgccttgtcc ggcctccacc      1500
     tgccacaacc ttctacctcc acgccaaatg agcaacctaa tgaaaatccc gcatcaccgt      1560
     ttttgccacc ccaaacttct tacgccactt tgaatatgac acctgcgtcg tactctataa      1620
     attcaccata cccgaaatca tatatcaggg acgctctcga tctcgtgcca aaatatgatg      1680
     ggcataacat tcctgtatgg cagttcgccc gcgcctgtaa acgagcgaga gactccatac      1740
     cgtcagtaga cgaggcacat tttgttagac tactccgcaa taaattaaat caccatgcct      1800
     atttagcagt agaagatgaa acccacctca ccgttgacaa gttcttagat acactcaaac      1860
     gaaccttcgg gccaggaaga agctcgaatt actaccgcgg ccaattaagc attgtttata      1920
     aaaaaccctc ggaacatata ctagattata tagggcgcat taaagatctc cggacggcaa      1980
     taatagaggg agatcaaaca aatctcaatc gttctctgac agaacctgaa acatcttcta      2040
     tagattcatt cacgctagaa gctttctacg aaggattacc cagagaatat cgcgtcgagc      2100
     ttaaggcaga gggataccat aatctcactg acgcttgctc gaaggtaatt accataagta      2160
     aaaggttaga gagggaagaa gcgcgagaaa ggaattcacg acccgcgcgc agcgacgccg      2220
     cacctacacg caccctgcct cccactagaa ttctccaacg cgatgattca tcaacgaata      2280
     acgcaggtag cccttataat aatcgcgaac agaagatttg cggatattgc aaaaattttg      2340
     gccatctggt acatgaatgt cgtaagcgac agtaccacga gagtacttcc ggtaacaata      2400
     ataataataa cagaaataat tacaacaatt ataatggaaa ttataacaac aataacaatc      2460
     ggccacgaaa tagtaatagc aacaataata ctactcctaa tggagtagtt aaaatttcgg      2520
     aaaaccagcc agaggcctcg gccaatggga cgcaccgagg tcttggaaag gctcgtcccg      2580
     ttcttccctt ggactactcc caaaacccgt ctacatccta cgagccgcca gcggaagcgt      2640
     accctccgtc gagctcgaat caccgtcctt ctatggacca accgctttca tgctcgatac      2700
     aggagcacag ccaaacataa ttaaacaagg atgcttgcaa aggaaaattg aagtaaacaa      2760
     tcaagaaatt ttacaactca caggcattac ggaggacgcc gttaacacct tgggctcaat      2820
     tcaagttcaa atcttcaaca tactagtaac tttccacgtc gtaccggacg acttccctat      2880
     catacaacaa ggtatactag gtacctcttt ctttacggaa cacaatgcct gtatagatta      2940
     cagcaatagt acggtcactt ggcataactg tgccatccca tttaaagaac aagaaacggt      3000
     ggtaattcca ccacgaacca ataccggatt tgttatccga gtatcaaatc ccgaaattaa      3060
     aaccggctat ctaccccgat tgcatatttg cgacggagtc ttcgcaggag attcattagt      3120
     gacctgcata aataacaagg cttatatccg tatcataaat acgctcgacc gcaaaataga      3180
     agttataata cctacaataa aactcagaga agttaccgaa atttctaacg agccgaaaaa      3240
     cgcctctaaa accaactcac ttaactctga tcaagcagat ctacacagtt ctcaactcct      3300
     cgaatcctct gcatcaatta aatctacatc attcgaagct aaacaaaaca agatcactaa      3360
     tcgtcaagaa tcgctttttc tcacatccaa ctacggcatt tcccctgccc cttcgtcttc      3420
     taattctaac tttaataata ctaccacttc ttttactaat tctaatactc cttctagtgc      3480
     cgcgcgcact tgctctctca tgggatcctt cagccgtgca gaatgcatgc gcccccatga      3540
     gaaacctttt tctagtgcca aatgcactca ctcccattcg ggatcttcca atttaactag      3600
     ttctcatttc ccctcccctc tcgtgccgta caaacccgaa aaagaaaaag ttatgatcaa      3660
     caacataaaa gaaaacgata ctgattacaa taagaaagaa accgtcatta ataaaattgc      3720
     atcagttaag gagaacatgg agaaagagga ttcaaagaga gttacttgga ctatggccga      3780
     gaggatatcg gccgttctaa aattattaag gcttgatcac cttgttccat tcgaaaagga      3840
     aaacgttatt acattagtta ccaattattg cgatcgattc tatataccta acgaatatct      3900
     ggataaaacg caattgctaa cacataaaat tataactacc gacgatgcac cggtgcatac      3960
     taaacaatac agatttccac cgatacatcg caccgaaata acgcaacaag ttaatcagct      4020
     tatagataga gacgttatta taccctcaac ttccccttat aattcgccta tttggatagt      4080
     gccaaagaag ccagattcat caggcaacaa acgatggcga atggtgatag actatcgtaa      4140
     gctcaatgaa aaaacaattg gggacgcgta ccccctccct aacatttgtg atattctcga      4200
     tcaattaggc ggttccaagt acttctccgt attagatctt gctagcgggt tccaccaaat      4260
     tccaatggac cccatggatg cacataagac tgcattttcc actcctcacg ggcattatca      4320
     attcgcacgc atgccgttcg gattgaaaaa cgctcctgcc acgttccaac gattaatgga      4380
     tcaggttctg agcgggctac aaggaattga attgttcgtt tatatggatg acatagtaat      4440
     atacgcgagt tcattaagag agcacgatat aaaaatagat aaactgatgt cgcggttacg      4500
     atctgctaat ttgaccttac aaccggataa atgcgaattc cttcggcgtg aagtgtcata      4560
     tctagggcat ataattggag aagacggggt ccgtcctgac ccacagaaga tatcagccgt      4620
     cgaaaagttc ccagcgcctc gcaacattaa aaatatccgt cagtttctcg gtctagccgg      4680
     ctattaccgc cgattcatac cgcaattttc tagtattgct tctccattat ctaacttgct      4740
     aaaaaaggat gttcaattca tttggaatga taaaacacag cacgcgtttg acacacttcg      4800
     caaactatta tgtaacgagc cgatactaca atttccggat tttgaacgcg agtttatact      4860
     taccactgat gcctccaact ttgcaattgg cggtgtattg agtcaagggg aaataaacca      4920
     tgatctacca atcgcttacg cgtctcgagt actaaattca gccgagaaaa attattcaac      4980
     tatcgaaaaa gaattgttag ccatcacata ctgcgttaat cattttcgac cttatcttta      5040
     cggacgtacg tttacattaa tcaccgatca ccaaccattg acgtggctac accgtgtaaa      5100
     agacccgacg tctcgcctta tgcgttggcg tttaaaactc gaagaattcg attataaaat      5160
     tgtgtataag aagggaatta gtaatagtaa cgctgacgct ctgtctagaa accccgtagc      5220
     aattaatctg attcattact caataatgcc tatccgaaaa aaaccccgcc ttgattccgc      5280
     catcctctca tcatccgaat ctgacgacac ctctgaatcc gatgatgagc gatccaggaa      5340
     acagcctgct ggggcaaggg ttgacgtcag agacatgaca acgcccgtgg cacctacatc      5400
     ctgcggaaat tctgaggatt ctcctatacc aaagctcata atccgcctcc gcaggaacga      5460
     gcctccggta gttttacccg cccccaccga accaatcagt tcgcaatacg agttaaggac      5520
     cgggcgaaaa actaattttg aggaattctt ccatgaagaa gaaagcgata gagattcgct      5580
     acctgacctg gagtctccag cagactctcc tgccaaatct cccaacactt ctaataacga      5640
     aacccccgac caacttctag attccacgcc gacaatttcg ccagacatct cattatctag      5700
     taattgtaaa atacaagaaa gtcccctacc tttattaagt agaactgata acctcatcat      5760
     attaattact ggtaacggtc accccctgtg cgacggagcg caggaactac tccaagccaa      5820
     caacctgcct ccccctgatg atcttgctct cggaagagcc cgtgttcact tttcatggca      5880
     ccgcgaccgc catgtcatca tgttaccagt aaaggaaaga cgaacgacgc ccctagacga      5940
     acaaatactt gatgaatgcc tcacttcatt attagatgta gtttcagaac tagacttacg      6000
     cacccttagc atacggctaa ccgctcaatt ggattcagtt tcatggtcaa ctatggtcca      6060
     aaagttacaa tcaacaatga tagatcgacc tataactatc actatttgca aaggaattac      6120
     ttccatccca ctggaaaaag atagaattaa aataattaac gaacaccacg agtctgctgt      6180
     cggcggacac aagggcgtta ccaagacata tcggctcatt aaaaaacgat acagttggcc      6240
     taatatgaaa acacaaattc aagatgtgat tagacggtgc cacacttgtc agttgcggaa      6300
     acttgttaga aagaaaacaa gacagcccat gatcttgacc gatacgccag atcacgcatt      6360
     cgataaaatt gcattagata tcgtcgggcc ccttaaaact acaaacgacg gtaacacata      6420
     cattctcact atgcaagatt tgctaacaaa atactcggtc tacgcgccgc tatctaatat      6480
     tagcgccgaa tcaactgcga ctgcattcgt caattatttt atatgtcgat ttggttgtcc      6540
     acgtagcatc ctcacggacc aagggcggaa tttcatgagt caattaatga agagtatcac      6600
     aaaaaaattt cgcattcagc aacttcgcac tacagcttac tacccgcagt ctaacggatc      6660
     acttgaaaga tcacatatgg tcctaatgga atacctaaga tgtttcgtgc gtaaagagaa      6720
     cgattgggat aaatttatcg aaagagcaag cttttcttac aatacttccg ttcatgaggg      6780
     taccgggttt acgcctcacg aactaatctt cggttcaccc gcacgaattc catctgaatt      6840
     caactccgac cctgaaccag aaacctatgg aaatcgacta atgaaggtat tttctgagat      6900
     acgagacctc cagcgcaacg ctaaggaaaa tctagataag gctaaacaaa aatcgaaaac      6960
     ttattacgac aaacgcgtca acgcaataat tattaatcct ggggatagcg tcttcctaat      7020
     taataatctc aaaactaata aattcgccac tgaatactta gggccataca aagtagtcga      7080
     agtgatggat cacgaaaatg ttaggctcga aataaacggg actacccgcg tagtgcacac      7140
     taataagtta aaaagggctt acccccgcaa tgcgggatga ccctacaccc cccccccatt      7200
     tttcctttgc aataacatta atctgttgtt aacactacaa cccctaaaca ccgagcattc      7260
     ccattcaagg ttcttcaatt atctcttcca gtgactccga catatttcgt cataatggaa      7320
     tcttgaagaa catctagccg cggtgtccca cccaatccac gaaacgtcac atttggcacg      7380
     tggaacactg aaatttcaag tggcatatcc caagggccac ccttcttgtt ccgaatggat      7440
     attaagatcc tgacggtaac tatcttgatc cgctgcactc acgcccttat aggctacgat      7500
     tgcagcgggt cacatacaaa tagcacactc atctcgcttc tcgagatcga agaatgcaga      7560
     atccctgaag ggaaagttat aactgaaaca gtaccaatac ggttacttga gctaccggag      7620
     accacgcatg tcagcgtact ctcctgtagg tttgaaatag aaaatataat acggaataat      7680
     gagaaaatta agcgcaaccg attctatttg tcatgcaacc ttgccgattg cgcctatctg      7740
     catgctcaca aaagatttcg cgttggaaat ataacctttg acaaattgaa aacaaatgtt      7800
     gtgaatagta gattgctacc tcctagcaat catgctcatt ttttcttacc tacgtctcca      7860
     aagactggta ttaagaatgt tgaaagctat atacatatag catttaacca aaataaaatt      7920
     aaagtaaata cgttgaaaaa taaaattacc ctcccccacg ggatttgcga gtattcgaca      7980
     ctacactgcg tagacgaaga agggtaccac aattattggt cacccatatt ccacgacggt      8040
     tgccacactt cgccaaatat tgttgtacac cgcggaaacg cgacaaaaat ttattccgac      8100
     gcgcgcccca tcgcatattt agtgccgttc gctgacaaga atctcctcgt atttgtgcgt      8160
     gaacgacaag acatctgtaa taccactgtg ctacaaactg aatacccacg actgatcatc      8220
     accatggaga acatcaccac accaaccaat cccgtgccat atgaccaacc gcaccctgtt      8280
     acggatccca cgacgtcgta ccacatcacc agctgcattt cggaaacccc taaatcggcc      8340
     tacatcaaag ccctactaga taagtgcgag aaggaaagga ttgcgctaca aatagccgca      8400
     cacaccgctc tatgggatcc tgatcaattt gcctacacta taaccggcag accaggacat      8460
     tcagcccaca tccaaggcga ggctgcacta gtgtatcgat gcacacccgt gccagtacaa      8520
     ataagaacca cagatacatg ctacaaacaa ttgccaatta ttgccaacgg tgctcccgga      8580
     tacctggcac caaggacacg agtgatctcc gcgtttggta ccgaggtcga gtgcaattca      8640
     gaggaagcca tcatcttccg cctcggaaat atctggacgc agtttcagcc tcaccggcga      8700
     aacgttacca cctccacctt gccgggacta aactacctgc cttggggatc acctcctcta      8760
     aaaactgaat acgaagtagc aggaaaagtc accttggaca atgcccaaca gagcactcca      8820
     ttagaacaag atacttccta tatccagcgc cagctttata aaatttgttg gataaccatc      8880
     tctttaatca gtcttgcact gatagtaagg cagagatgct ataggcgaaa gaaatcgctt      8940
     gttaattgcc aggaacttgg cctcaccgct acatcgaaac tgtcgtgcat ccaaagcgca      9000
     tagcagaatc aagggaacga agtagagagc catactctat tttaaatcac cgtgctcagc      9060
     ttctccaaag gccagacagt cctaggaccc gactaccatt acctacacct cgccgaattc      9120
     agcctgagat attcaaggaa atgacggcgg tttctcgatc cctcgaccgt ttggagaacc      9180
     ggataaacga atggatcccc acgcctatcg ccacaacagc agaagtggaa aatcacagtg      9240
     aacaaaacag acaacgaatg tgcatgaatg ccccgcgaag gggaacgtga agtgaactac      9300
     attacaacta aaagaaaata caccttgtta ggtaatttcc tatgtaaaga ggaaaagagt      9360
     agaattcttt tctgtcataa taaaagggta aagtagaaat agtgaagtaa cagaagattt      9420
     tcattataca aaaaaaaaaa atatatatga tatatattaa ttaatgataa taataataga      9480
     tttcttttta ttggaagaaa gaaaaaaaaa attttctttt tctttttttt ttctcttttt      9540
     atatatatat ataatcactc tcgtatcttc tcttttcccc tcacattgta cgcctatgtg      9600
     ctatacattt gttttttttc ttttcttttc tttttttttt cattttgttt attagcggga      9660
     gcaactttca ctttttcttt ttcttttcgt cttttctttt aagtatgcgc gccacgaatt      9720
     tttgttacca aaatttttct ttattttttt ttatatatcg cagttacccc tttttccctc      9780
     aacgtattta ctttattatt ttggcaggaa aacaacagtt ttccacaaat cttccgggac      9840
     ttagagggag tcgctctctt taaaaatcca agcaacttcc tctaactccc tttgcgtaca      9900
     atagatcaca agatctcttt ctttctttaa ttataagcca gtagttatat atataataaa      9960
     taaagatata aaaactgatc actatgatgt taaaaatagt gatctgtaga aaaattcgcg     10020
     ttactattaa aatgagtaat cacagtgata ctcagggata ttatatgtcg tcagtattat     10080
     taatgtatta ttagaatgct gtagcaatgt caagaatgaa ttatttggtc aatcaagtgt     10140
     taatgtctcc aagaacaaag aaaaagatat atatgtatat gtgtataagc aggcatgtac     10200
     gtactgtgat acttgataac aatatataca tgtatcctca gcattaataa cactacaagt     10260
     actcagttgc tgaaatcatt aaattttaaa tatattacaa aaactcgttg tcatggtata     10320
     acactacatg ccagtaaaat aatagaaaaa tattaaggtc tcattaattc attaataaca     10380
     agttttgaca attttcaagg aataaaatca agtaccatta actcaatcaa gtattaatgc     10440
     acttaaaaaa atcttcctgt aattaagaaa tacggtattt ccagtatcac taaatcaaat     10500
     aagaattata tacatatatt agggacaata gcctatcgtt gatttaaaaa tcaacctttc     10560
     actcttggag agattactac tattattact tagggataat atacacatag ttaagtctta     10620
     actgacacaa ttaaaaatta ttaaatgtta aaaggactga ttgaagatac taatatagga     10680
     tatattaaaa atcaagttgt gatatataat gtaacataag tagcataagt ataattaaaa     10740
     tatataatat agcataaaat aatttatgta cgtggtagta tagtatagca tattaattta     10800
     ctattaggta agacattagg tatattgcca agcgttattg aaaattcata tatactattg     10860
     aacgtcatca ccaagtatat tgtcaaaatt acgtattaag caacacgcag tatataattg     10920
     taattcgtga tacgtcattg tcaattaatt cagtattaac aagtaacctt acagtgatac     10980
     cgataaacac tgtattccta atatcattag actagatgta tgtatatata tatatatata     11040
     tacatacaag actacagttt accattgatc caatgatcaa gccccttcgg gaatctatta     11100
     ccatactaag aaataatata tatatatttt caacattaat aaacattgtt aaggactatt     11160
     aaacaaaagt attattttaa gatatattga atatcacaga ttaagtcatt agtgtaatat     11220
     ataatatata tagcctagag agaaattata tttgaaaccg tcactattat caaagattat     11280
     caaacgttaa gaactccacc aaatatgtta ttaaaattat agactaaata ttatacgtta     11340
     tacagccgta attctagttg cgtcgttatg aatcgaatag aatagtaacc gagcgcgcaa     11400
     tattataagc gtgagttatt tggtgagtgc gttgtatttc gtttcctttg agtcgagcga     11460
     tatcgcaacg ttttcactct gtctctctct cgcgacatcg tctttccttc gagagccagc     11520
     aaccttttct tttctttctt tctttatttt tcgtgaccat aattatgctc aaataaatta     11580
     atttaatcta ttgatttaat ctagttgagt cgcgacatct ccgatatcgc tctaccataa     11640
     ggagggggg                                                             11649
//
ID   Gypsy-36_MoPha-LTR repbase;    DNA;    INV; 2751 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-2751
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1200-1200 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2751 BP; 745 A; 779 C; 554 G; 673 T; 0 other;
     tgttacgttc gatgaaaatt tttcaatgat ttcatctcac gttcgcgcac cgcgctctcg        60
     cgtgctccgc cggagcaccc gtctcaccga gcgctcccct ccccacgaaa tcagacgcgc       120
     ggagtatcag cgcgtacacc ctacgcttat actctttatt aattttattg ttatcacgtg       180
     cgtaattatt acctcaattg ttaaagctca aacccatcga atcatgccgc gtatagttaa       240
     aaatttcatt aaaagagcaa cattctttcg tcgcctttct attactatta acgacagggt       300
     gcaaccgcca cccctcaact ctcttgttaa ttgataatac tgcaatccgt cgcagtcatg       360
     ctataggtct ttcacattat tagtaacctg gaataatgtg aatagttgaa aaccatgcgg       420
     ttcacgcgtg acacccttgc gctaccgaag agtcggtcca gccgcggagc gcgtgtacca       480
     agtgggatag caatagctcg agcattattc caatcgggaa gtatgagtaa gatagaataa       540
     gtaaagtaat tacaaaggta tgcggtttaa ttgctccgct cacagaggtg atagggggaa       600
     ggcgaaggaa gcattcgaac gctaatcacc ctggctacct cttgaccgaa gtttatattg       660
     atccgaataa aaattagaaa ctatgaaaat tcaaaagtaa tggttatttg tcgcggaatt       720
     ttccatggat ttgagcttcc ctacacccgc gtacccctag gaccccctag ttttcgggta       780
     tataaggagc gcgagagcct caggaagcag cattctcgct cccataacga gtcgcgctgc       840
     cagtagacgt tactctgaag aaagtactat ccacgcgata attattagcc ttcgtgctct       900
     tactactaca aggtatacga catcgagact attaaattct tgatagaatt taaacaagaa       960
     accgagcagt gcgtaagtaa tatctctcgt acatacaagc gccgtaaaat cattgtcaag      1020
     tgtagactca cgcaactttg tttaaaataa agtttttgtt ttctctctct taaaaagaaa      1080
     aatctgttca atataactgt tttttttttt atatatacct agtggctaaa aagaaatcta      1140
     ttagtccgcg aaaaattatt aagtggggca aaatacgggg cgaaaccatc ctcggtgctc      1200
     ccaaaaatat tctgaagcga tatagcgact tccctgaatc ctcatcctgg aagctgggcg      1260
     ctacgattca ggcgcctgct tcctccctga acttcaagcc aggggcgcct accggggcgc      1320
     ttaagctaga aggtgtccag gggacaacgg gcgcctatta aggcgcttct catcccctac      1380
     gtcgtccctc catctaaact gtgcaccata gggcagccca tagggcgctc tccgtcacaa      1440
     acgccccatc tttcctttgg cgtgggattt gttgcgccct ccctgggcgc tcccccctca      1500
     cgcagtctac gccttgtcgc aattagtacg ctcttcctcc caataatatc cgagaaagta      1560
     cccacaaaag aaaagaggta ctctcctttt tttttattat cacttttggc ctaaaaatca      1620
     attcctaaaa agcaccacta aaaaccgcgt cattcacgtg acaggcagta acaacgcgaa      1680
     taataataag aataactatc attgatctct ctctctttct ctctctctct gtgttgacgt      1740
     actctcggtc cgcgtccgtg tggaacggaa caagacgggt aagaacagaa cccgagtcaa      1800
     tctctcacat accttccgtg ggatggtacg ggctgcccgc tagggcgctt atcccctgca      1860
     ctcccctcct tattccgtaa ggcaatgggc tcgcctattt gggcgcttta cccccacgga      1920
     cttatacaat cacaaactta atagattgac tcgatttctc atctaaccca gcaaaattac      1980
     accgattaaa catttctata aaaattaaaa gaaaggaaaa taaatattaa cagagagaaa      2040
     gagaggaaca ttacacaaat tacacaactc ttgcaacact cgcttatcca aatttacctg      2100
     cctgacacgt gtcttttcta tataatcatg ggttcgttta ataaatttgg ttcactacca      2160
     aacagtgcga catcatgcca cggtctcgcc gaggaggacg gaagcggcaa atcaaacgat      2220
     taaaatggcg tcttatcgag gctggaacgt tcgacccgac cgtcttcgat caacctccgc      2280
     cccccgacac ctccccgaga cgccacggat caccgggccc gtttgggctg ccgcctccac      2340
     agcctacccc ctgcacccgc ccagttcccc cggcaccacc ctgccatagc gcaccaaact      2400
     tcgctccctt caggcgcccg ccgccccggt tacccccagg gaccgacata gcccctatac      2460
     gcgcccccac gcgtcccgct agagtggacc gtcaggcccg tccaccccag cgacaaggcc      2520
     cccgcatcac tagcgacgag gccttcgtcg ggtcgctccc caaactcgcc ttatccggca      2580
     aagcgacccc tcggtccgta gaaacttata gaaggcttct caagcccttc gaaggagcac      2640
     cacctctcaa aagagcaaaa caagcaggag aacaataaaa cagttacgct cctggggaac      2700
     tacgggttac gctcggcccc ggttacttcc tgcctccccc aggacgtaac a               2751
//
ID   Gypsy-36_MSe-I repbase;    DNA;    INV; 5394 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5394
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 913-913 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5394 BP; 1789 A; 964 C; 1123 G; 1518 T; 0 other;
     gttcagaatc gggatattct tacgcccata agttgttttt accatcatgg gaaagcgatc        60
     tcgttcgcga tcgcgggagc gacgtcatcg tacatcaaaa catcggaagc ataatgcgct       120
     ggagtcccgt ctagaaaact tagagaaacg gttgaacaaa gtgctacagc cgctggactt       180
     gaatttaacg acgcggggga gttttacacc ggttcaacaa tcgagtgata caacaaattt       240
     agtgtttaca cccccaacag ttccagaaac tttttcagta tcagcatgtc cattagcaca       300
     aacagggtcg acgatgttgg tgggtggcgg caagcataat gaaaaatgcg acacgccggc       360
     gtctacgcta caaccgcccg cgccgcaaaa tttgcacagt gtacctactg caaacagcgc       420
     gacttctgtg gtttgttcga caagtcaagg tcaggtgaac aaattattac cgggtttaga       480
     taatattcct gcatttaccg gaaacatgtg tagtgacaaa atgagtgctc aaaattggat       540
     aagacgattg gagtcgttag ctaaaatttt tgcatgggac gaacgatttc ttatatttca       600
     aatgacgtca aaattatcag gcaatgcacg attatggttt gatgcacaac aggatattga       660
     ctttagttgg gaggaatgga aggaaaaaat agttgttaat tttccggaag gaagaggaat       720
     agcctcaaaa ttatatgatt ttgtaacagt gatgcgagaa aataatgaaa gtgtattaga       780
     tttttattaa aaaaaaaatc attaggaaag aaatgcgatc aacctgatca tgttatagcc       840
     gacgtaataa ttttcacatt gaatgaccca atattgaaat cgggagcccg aggtgccgca       900
     tgccatgaca ctaaaagttt attacaatac ctaacagatg tcgcttcaga ttccgcgttg       960
     attgataaaa gtaaaagtac cagtgtcact aaagaaaata ataaatctgc aattattcgt      1020
     aaaacaatgc caactcgcac aaagcgagat gacattatgt gttataattg tggcactaag      1080
     ggtcactttg cgaatcaatg tacaaagagc gaaataaaac gttgtgatcg ttgttataaa      1140
     tttggtcatg atgtttccaa ttgcaaagaa gaaaaacagt gtactatatg ccataaatgg      1200
     ggtcatgata aagaacaatg ctaccgtgca aaaaaagaac ttactgataa gcctcctaaa      1260
     ttatatcgtt tgacggatgt cgatgaaaat gacaagaaat atcataaaga cgttgtcata      1320
     aatggtatta agttaacggg gtatattgat tttggtagtg catgtaatac tataactact      1380
     agcgcggtga tgcgaacagg tttggaattc agtaaaggtt catctcgtac aattcgggct      1440
     tatggtggta gtcttgtaat accagtaggt gaattgacag ctcatgttgc actagactgt      1500
     gcatctggaa ctgtacccat tttggtagta gaagacaatc tacaagaaac tgacatgata      1560
     ataggccgac cgtttacaga gttacctaat gtagttgtga caaaaaccta caatgagttg      1620
     tccatttcta atgttaacga tactgctaat aattttaatg ttctaccaac agtctcaacc      1680
     gaaaataaag tgttgaagtt gtctgttgcg tatgatgtta cattatatca tggtgtaaat      1740
     catgttttag ttacgatacc agacgatgtt aaacaattaa attccaacgt aatttatgtc      1800
     aaagcttctc agcatcgtga gcctggcaaa gaaattgata ttttagaaag tccgatagtt      1860
     ttgaatcaaa attacgccga aataaaagtt gttagtcgta atcactcacc tttaactatt      1920
     tatgcgacca aatgtattgc acgcgctgaa atcttaacac caacaattga gttaaatacc      1980
     gatttagtag gaaaaggatc gagaacgact ggacgatctt ctcaaacgat acgatcattg      2040
     ttttgctggt attgaaggga aaataggatc agcaaatatt gaaatgtcca ttgaagtaac      2100
     tagctccata ccatttaatt atcaaccgta tagaatgtca caacccgaaa gggaaacagt      2160
     taaaaaaatc attgacgatt tgttagagca agacattata gagccaagta attctgatta      2220
     cgcaagtcgt atcattctgg tatcaaaaaa gaatggggat actagaatgt gtgtagacta      2280
     tagacattta aacagtatta cccgcaagga taggtaccct ttaccattaa tacaggatca      2340
     aatcgaccag ctcaatgggc agaagtactt tagtacactt gatctctgtt ccggttatca      2400
     tcagttatgg atacatcctg atagtcgaaa atatacggct ttcgtaacac cattcggcca      2460
     ataccaatac aaaagaatgc catttggact agccaatgct ccagctgttt tccaaagggc      2520
     tattaaccaa atgttaggta gtctacgatt tcagtttgct ggagcttacc ttgatgatat      2580
     tatttgtttt tctaagacgg cttctgaggg tttggaacga ctagaggcaa tcttgaaatt      2640
     aatatccgat acgggtttaa cgttgcgcaa agaaaaatgt tcattcctta agactaaaat      2700
     taattatctg ggctttgaca ttgcacaaaa tgagattcgt ccatcgcctc ataaagtaga      2760
     gtgtatcaaa aatttcccca aaccaactac cattcatcaa ttaaggcaac tcataggact      2820
     ggctagctat ttcaggcgtt ttataaagtc atttgcttta agggcacgtc ccttgactct      2880
     attattaaag aaaaattctt catggtcctg gggaaaagaa caggacgact cttttaatga      2940
     tattaagaat gccttgatgt cacgaccggt actagcgatt tacaatgaaa aattggagac      3000
     ggaggtgcat actgatgcct ctgcgttagg tattgctggt atactgatgc aaaaacagct      3060
     tgatggtcaa ttgaaacctg tggcctatgt gagtagacag actacggtgg ccgagtgtaa      3120
     gtaccattcg tacgagctcg aagcactcgc agtggtcatg agtttaaaaa aatttcgggt      3180
     gtatctttta ggaaaaccgt ttactgtaat tacagactgt aatgctctta gcactacgtg      3240
     gacaaaacga gatatggttc cgcgaattgg tcggtggtgg ctcgaactac tcgaatacga      3300
     tttcaaagtg gtgtaccgtc cggggacacg tatgcaacat gccgatgcac ttagccgcaa      3360
     tccggttatt gcaaacgttt tacacataga tcaaaagaca tgggtaactg ctgtacagca      3420
     gtctgatgat aagattaaca atataatatc tgatctcaag tctaatagta atgaaactga      3480
     tgctgtaaag aacgattatc gccttgtaga tggtcagcta tgtaaattga tagatgggaa      3540
     gaagaggata gttataccta agtcagttag gtggcgtatt gtaaaaatgt accacgacga      3600
     taatggtcac atgaatcagg aaaaggtgat tgaattgatt cgaaaaaaat attggttcga      3660
     aaaattacgt cgatttgtta caaaatacgt aaaaagttgt atttcttgtc aatttgctaa      3720
     gaaacccacc gggatacaaa ggggtaaatt atatcctata gataaaggca atacaccatt      3780
     tgaaacttta catattgacc atctaggccc attctgtgaa tcacaggagg gcaacactta      3840
     tcttctgtta gtcgtagatg gctttacaaa gtatgtgtgg ctgcaaccgg tacctaatac      3900
     tcgcaccgaa cacgttttgt cgacactagc actgtttgag aaaatatttg gtacgcctgc      3960
     tcgcatcatt agtgaccgag gtaaatgttt tgcaagtcac caaatggcaa gtttttgtgc      4020
     taaaagatgc attaaacatg ttcaaaatgc tgtagcttgc ccgcgagcaa acgggcaggt      4080
     agaacgattt aatcgcacag ttttacaatc gcttacagcc tgcattggtg acaaacataa      4140
     tcagtgggag aattacttat cgcaagtcca acgaggtatg aattctacag ttaataattc      4200
     aacaaagaaa agtcctttcg agttaatttt tgcttttacc ccacgatttc ctttagatgt      4260
     tccaaatcca gaacaggata ctcccgatat taatcaaaat cgcaaagtgg tagcagaacg      4320
     tttagcagat aatgctgcaa aaatgaaaac tcgttatgat aagagccgta taaaatcaat      4380
     aaattttcag gtaaatgact tagttcaggt agaacgaaga gtattaaaaa aggggataac      4440
     aagcggaaaa ctagttgaca aatacgttgg tccgtataaa attattacaa agttggataa      4500
     tgacaggtat cgagtggaat cattaaattc aaaaggtcgg aaataccgga acgtaatagc      4560
     aggagataag atgaaacctt ttagagtaca agaaaactct gatagtgaag aagatgagta      4620
     acttggatag atgataattc ttgtcattat gatagccata atagttattg gttatatgtt      4680
     tcatgttctt ggttatattg tgaatcttta acaaacaaaa aaatgattgt tatggacata      4740
     aggtcttaga gatctgttaa tgagtaaatt atgaaagata atccacaaat agttaacgtg      4800
     attaaaagta tgatgtaacc gatgtcatgg tgttttatga tatatgatat ccatccatat      4860
     tagtgggagc cagttcggtc aagcccaaac tgcctaaaat cagttcggtc aagcttatgc      4920
     aatcaagacc agttcggtca agcttaagct gtcaaaacca gttcggtcga gcttatgcag      4980
     ctaaaaccgg ttcggtcaag cttaagctgc cataaccagt tcggtcaagc ttacgcaatc      5040
     ataaccagtt cggtcaagct tacgcaatca aaaccagttc ggtcaagctt aagccgccaa      5100
     aaccagttcg gtcgagctta tgcagctaaa accggttcgg tcaaacttaa gctgccaaaa      5160
     ccagttcggt caagcttaaa ccgcataatt cttgtttgtt ccaggtcgga caaggcagca      5220
     ccagttaggt cagactccta tgttcatggc cagctcggtc aagcatattc cgagaaaacc      5280
     atcctagttc agtttggtca agacaacttc agttcatttc aatgttgatc gattaaataa      5340
     tttctgtgtt caaccctgta atacgaggtc gtattctagc tcaggatgga cgac            5394
//
ID   Gypsy-36_MSe-LTR repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-219
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 962-962 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 219 BP; 49 A; 58 C; 73 G; 39 T; 0 other;
     tataagaggg gcccgaacac cggccgagcg cacccgagta gcgacgactg cgggcgcggt        60
     ggaggggccg ggcgcgggtg acggggcaac gcggcggcgg cggcgcggcg cagatcaccg       120
     agcagtgtgc cacgcatatt acgcacgagc tgtactgttg tgaaacatta aatacactgc       180
     tgtatttacg ttctacatta tttgtgaata cctctaaca                              219
//
ID   Gypsy-36_NVi-I repbase;    DNA;    INV; 9512 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposon from Nasonia vitripennis, interanl
DE   region.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-9512
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1389-1389 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           72..1430
FT                 /product="Gypsy-36_NVi-I_1p"
FT                 /translation="MSAHHERDRFVNTQRNTKFTLDFEDSLLTKLKDKEDK
FT                 LKIAIANSSPETPKLIQEVDSLTKEVRNSCERFNIDTSANQDLPRNKKEYY
FT                 QYRLNKSNQSEDSDDEVSIHEIKTEQNQTITQNKNILLKPPTLNRNAESSC
FT                 LGTSTPVTRGLAQKNNLTTIFGSLGIQETPIDKNAINNIKQHLSIEIKPEV
FT                 LDAFFNDENNAAEIDKTINNPGFGFFQAIKLVRQRLSTFTTGIPQLENIKI
FT                 KTSPNHTDSVEKSELFLSFDRSFNALKIESPQKSKIEKKPKMAETIQVRGM
FT                 SISNVLDLIPRFNGQNVSLSLFLDGCREAKELLPSTLEGELAKFIRMRLYG
FT                 DALNSTRGQTFATVNEVMEFFENIYGSAKTYHDWSGDLAKMKQKSNESVIV
FT                 FLNRIREIEKEITAAAQREGRISIKKKHLKMISKKTASNFLKGDYVGRSGG
FT                 AWVRLPL*"
FT   CDS           join(1265..2125,2008..6714)
FT                 /product="Gypsy-36_NVi-I_2p"
FT                 /translation="NSGNRERDHSRGSAGGPDKYKKKTFEDDLEKDCIKFF
FT                 KRGLRWEIRGRMGTPTTLKEAREQAIEIEREYAGCAIDDDELPDAKFKNKE
FT                 TRKVHVVDYDQSSMKCGFCGKIGHVTLNCRQFALQHLQRHSDVRDYQRDRG
FT                 PPPRGNQNFRNETRPNNTNFGGWNAENRQRNGFLPNQMNNNYNNNNNFNRR
FT                 ITENPRYNNSENLRSSNNSNRNNTNNQSTFRPTCYYCGIQGHTRNACFKLQ
FT                 QDMRSGNVAQGNAESLSQEGARREMTSGTRPNDSNERNTPTSAPKLRSAGK
FT                 RRVSFSGGRAERDDIWHAPERFQREEYSHVRTETINLSRASTVPTIRVDIG
FT                 EFNKPLEFMLDTGASVSLVRKSEVSPYTNINTNEIIRLKGITTQYISTLGK
FT                 VTVDFNNVSTDFHLVDDDFPITEAGILGNDFFRKNEATINYFENYIEVNGQ
FT                 IIPFEKYPTEIEPIDTKPRVTSESKNTRVRSDLSEGGETDRGYDDSYVDDT
FT                 RNIFDQGNDKLIEENSELIKENKELIEENCEFIDEKDNENFCIRDENIYVN
FT                 QNLENIYVHFDTNDRDVIESDEFNIQEINDESSENIYTIEYVENLFKEIER
FT                 LKKLLQVNTSQGNESEHTDYVNIEKNVVMNKIKSSAEDTEMKNKVNVAEII
FT                 DDEVIKVDTKNVFVDEVTENIFEENKNNDNFEIIANDIDYEIDSELENCLL
FT                 KEGSVNAETFEKLYGDKQENKLNNCHFVENYIENSHMDDLCYNYMEISDKD
FT                 YFANGMPNNATTIPIFQIKEAENAEMPRIDRLKSLLRYTHLETELRQPIER
FT                 LIEEYADCFHLKGEKLGTTNFIKHRILTVSDVPICTKPYRFPHALKQELDN
FT                 QIQEMLEGGVIQPSNSNYSSPVFLVAKSPDSKGNKRYRVVVDFRKLNDITI
FT                 KDKYPLPNILDIIDQVGGAEYFSVFDLAQGFFQIPLHEADRHKTAFCSSNG
FT                 LYEFTKMPMGLSNSPATFQRCVDKIFKDMQGKEIFLFLDDAVIYGKTIEEH
FT                 NTKFEKFLKRLREANLKLQPDKCEFLKKEVIYLGHLLSKEGVKPDPKKLEA
FT                 VRNFPLPKTQKNIREFLGLAGYYRRFVHNFSGIAKPLSNLLKKDVELVWNE
FT                 QTQEAFDILKEKLCSKPVLQIADFSKPFIVTCDASLHAIGGILSQGEIGKD
FT                 RPIGYVSRVLSDTESRYDSYSREALAILYSVSQFRPYLLGRHFTIVTDCKP
FT                 LIWFKNSTDLTSKVSRWRIKLNAYDYDIVYKCGKANVNADALSRNPVERSE
FT                 ETQQEEPVLVVETRARTGKIQIPNYRENRPKRAKISHDKNQNNDTPENYDA
FT                 EKVETTNEPDTNLTNSQDNQLKFPIESNTENENVQEVEPVINKERKYGKIF
FT                 VECKEQLFMRKDNYIYFITSDGTPSDEGARQLHTRNELPRFSELEAGEIKI
FT                 TNRNNKLHFAIVTRGKQALSTTEILNNITVAFKVLKSLIVKENICSISIAK
FT                 SKDIENVLWDDVLIKLRHLLKGIPVKIIICLGIIRYIAEKDRVRIMEELHN
FT                 TAIGGHKGVNKTYKRIKQKYYWENIKEDVQNFIRKCLTCQLKKLVRVKTKQ
FT                 PMQITDTPQSPMEKISLDIVGPFPVSKNGYNNILTIQCNFSKYCLAIPIKD
FT                 ATAESVADALIKRFICIFGAPLTILTDQGSNFMSSLMRRVAKKFRIKQVKT
FT                 TAYHPQSNGSLERAHHSLTEYIKTALDKETWDECLELATFCYNTVPHEGHQ
FT                 FTPYELVFGHLARVPSNEPLEPEDLIPTYNDYVVNLSKRLNELQRIAREKL
FT                 IESKIRSKYYYDKKINPKEFRIGDTVWLLKGGKQYKLADQYEGPYTVVDVF
FT                 NNQRNVKIRMKNKKIKTVNANRLRVSYIEPEEV*"
XX
SQ   Sequence 9512 BP; 3643 A; 1712 C; 1758 G; 2399 T; 0 other;
     cattaatata tttattattt taaaatggtg catagcggcc gggaaatgcg gaaacgaagt        60
     cacttggtag aatgagtgcc catcatgaac gcgatcggtt tgttaataca caacgcaata       120
     ctaaattcac actagatttt gaggactcct tacttaccaa gcttaaggat aaagaagata       180
     aactaaaaat cgcgatcgca aatagcagcc ccgaaacacc gaaattaata caagaagtag       240
     actcgttaac taaggaagta agaaactcgt gcgaaagatt taatatcgac acgagtgcaa       300
     atcaggactt acctcggaat aaaaaagaat actatcaata tcgtttaaat aaatcaaatc       360
     agtcggagga tagtgacgac gaagtctcta ttcacgagat caaaacggaa caaaaccaaa       420
     caatcaccca gaataaaaac attcttttaa aaccacccac actaaataga aacgcagagt       480
     cttcgtgcct cggcacaagt acccccgtta cccgaggact cgctcaaaaa aataacttaa       540
     cgactatctt tggatccctg ggaatacagg agactcctat agacaaaaac gcaataaata       600
     atatcaaaca acacctaagt atcgaaatta aaccagaagt attagacgca ttttttaacg       660
     acgaaaataa cgcggcagaa atcgataaaa ctataaacaa tccgggattc ggtttttttc       720
     aagcaattaa acttgtgcga cagcgcctta gcactttcac aacgggaata cctcagctcg       780
     aaaatataaa gataaaaaca tcaccaaatc acaccgattc agttgaaaaa agcgaactct       840
     tcttatcctt tgacagaagt tttaacgcac tcaaaataga atcgccccaa aaatcgaaaa       900
     tagagaaaaa accaaaaatg gccgagacaa ttcaagtccg tggaatgtcc atatccaacg       960
     tgttggattt aattccacga ttcaacggac aaaacgtatc gctatcactc tttcttgatg      1020
     gatgcaggga agcaaaagaa ttgctaccca gcactctcga aggagaacta gcaaaattca      1080
     tccggatgcg cttatacggg gacgcgctaa atagcacccg cgggcagact tttgcgacgg      1140
     taaacgaagt tatggaattt tttgaaaata tatacggttc agcaaaaacg tatcatgatt      1200
     ggtctggcga cttagcgaaa atgaaacaaa aaagcaacga atccgtaatt gtatttttaa      1260
     atagaattcg ggaaatcgag aaagagatca cagccgcggc tcagcgggag ggccggataa      1320
     gtataaaaaa aaaacatttg aagatgatct cgaaaaagac tgcatcaaat tttttaaaag      1380
     gggactacgt tgggagatcc gggggcgcat gggtacgcct accactttaa aagaggctcg      1440
     cgaacaggcc attgagatag aacgcgaata tgcgggttgc gcgatcgacg acgatgagtt      1500
     gccggacgca aaatttaaaa ataaagaaac gcgcaaggtg cacgtagtcg actatgacca      1560
     aagttcgatg aagtgcggtt tctgtggaaa gatcggacac gtgacactaa actgtcgaca      1620
     gttcgccctt caacatctgc agcgacatag cgacgtgcgt gactaccaac gagaccgagg      1680
     acccccaccg cgcggcaatc aaaattttag aaacgaaacg cggcctaata atactaactt      1740
     cggaggatgg aatgccgaaa atagacaacg caacggattc cttccgaatc aaatgaataa      1800
     taattacaat aacaataata atttcaatcg aaggattact gaaaatccac gatataacaa      1860
     cagcgagaat ttgagatctt cgaataattc aaatcgtaac aatactaaca atcaaagcac      1920
     atttagaccg acgtgttact attgcggtat tcaagggcat acgcgtaatg cctgtttcaa      1980
     gctgcagcag gacatgcgct cgggtaacgt agcgcaggga aacgccgagt ctctttctca      2040
     ggagggcgcg cggagagaga tgacatctgg cacgcgcccg aacgattcca acgagaggaa      2100
     tactcccacg tccgcaccga aactataaat ttgagtcgcg cgagcacggt gccgaccatc      2160
     agagtagaca tcggagaatt taacaagcca ttagagttta tgcttgatac cggagcctct      2220
     gttagtttag tgcgtaagtc ggaggtatcg ccctatacta acataaacac gaatgagatt      2280
     ataagattaa aaggcataac aacccaatat atttccactc ttggcaaagt gacagtagat      2340
     tttaacaacg tgtcaacaga ttttcattta gttgacgacg attttcccat cacggaagct      2400
     ggcatattag gtaatgattt ctttcgtaaa aatgaagcga caattaatta ttttgaaaat      2460
     tatattgaag ttaatggaca aataattcct tttgaaaagt atcctacgga aatagaaccg      2520
     atagatacga aaccaagggt aacaagtgag tctaaaaata cacgagtgag aagcgatctg      2580
     agtgaaggag gggagacaga ccgcggttat gatgattctt atgtcgatga tacacgaaat      2640
     atatttgatc aaggaaatga taaattaatt gaagaaaata gtgaattaat taaagaaaat      2700
     aaggaattaa ttgaagaaaa ttgtgaattt attgatgaaa aagataatga aaatttttgt      2760
     atacgagatg aaaatattta tgttaatcag aatttggaaa atatttatgt gcatttcgac      2820
     actaatgatc gtgacgttat agaaagtgat gagtttaata ttcaagaaat aaatgacgaa      2880
     tcaagtgaaa atatatatac aattgaatac gttgagaatt tatttaaaga aattgagcgt      2940
     ttaaagaaac ttttacaagt caacacttct caaggcaacg agagtgagca tacagattat      3000
     gtgaatattg agaaaaatgt cgttatgaat aaaattaaat ccagtgcaga agacactgag      3060
     atgaaaaata aagttaatgt tgctgaaatt attgatgatg aagtgattaa ggttgatacg      3120
     aaaaatgtat ttgttgatga agttacggag aatatatttg aggagaataa aaataacgat      3180
     aattttgaga taattgctaa tgatattgat tatgaaatcg attcagaact tgagaattgt      3240
     ttactaaaag aaggatctgt aaatgctgaa acctttgaaa aattatatgg agataaacaa      3300
     gaaaataaat taaataattg tcattttgtt gaaaattata tcgaaaatag tcacatggat      3360
     gacttatgtt acaattatat ggaaatttca gataaagact attttgccaa cggaatgcca      3420
     aataacgcaa cgacaattcc catcttccaa atcaaggaag ctgaaaatgc cgaaatgcca      3480
     agaatagatc gtttgaaatc attgctaaga tatactcatt tagaaaccga actgcgccag      3540
     ccaatcgaac gccttataga ggaatatgcc gattgctttc atttaaaagg ggaaaagttg      3600
     gggactacta attttattaa acatcgaata ctaactgtta gtgatgtgcc tatttgtact      3660
     aaaccttata gatttcctca cgctcttaaa caggaactcg ataatcaaat acaagaaatg      3720
     cttgagggag gtgtgattca gccttctaat tctaattatt catcgcctgt atttttagta      3780
     gcgaaatctc cggacagtaa aggtaataaa cgatatcgag tggttgttga ttttcgaaaa      3840
     ttaaatgata taactataaa agacaaatat ccactaccaa acatattaga tattatcgac      3900
     caagtaggtg gagcggaata tttttcggtt tttgatttag ctcagggatt tttccaaatt      3960
     ccgttgcatg aggctgatag gcataaaact gctttttgct cttcgaacgg tttgtatgag      4020
     tttactaaaa tgccaatggg tctttcaaat tcgcccgcaa catttcagcg ttgtgttgat      4080
     aaaattttta aagatatgca aggtaaagag atatttttat ttttggacga tgccgtcatt      4140
     tacgggaaaa caattgagga acacaatact aaattcgaaa aatttttgaa aagattacgc      4200
     gaagctaatt taaaattgca accggataaa tgcgagtttt taaagaaaga agttatttat      4260
     ttgggacatt tgttaagtaa agaaggggtt aaaccggatc ctaagaaatt agaagcagta      4320
     cgaaattttc cattacctaa aactcagaaa aatattcgcg aatttttggg attagcgggt      4380
     tattatcgcc gatttgtaca taatttttcg ggcattgcta aacctttgag taacttatta      4440
     aagaaagacg tcgaacttgt atggaatgaa cagactcagg aagcatttga tatattaaaa      4500
     gaaaaactct gtagcaaacc tgtattacaa atcgcagatt tttcaaagcc ttttatagta      4560
     acgtgtgatg ctagtttaca tgctataggg ggtatattaa gtcaagggga aataggcaaa      4620
     gaccgaccga taggatacgt gtcgcgagta ctttccgaca ccgaaagccg atacgactca      4680
     tactctcgag aagctttagc aatattatac tctgtgtctc agtttagacc gtatttactc      4740
     ggaagacact ttacaattgt tacggactgc aaacctttaa tctggttcaa aaattcaacc      4800
     gatttaacgt caaaagtaag ccgatggaga attaaattaa acgcgtacga ctacgacatc      4860
     gtgtacaaat gcgggaaggc taacgtgaac gcagatgctc tctcgagaaa ccccgtcgag      4920
     cgatccgagg agacacagca ggaggaacct gtgctagtcg tagagacacg tgccagaacg      4980
     ggaaagatac aaataccgaa ctatcgagag aaccgaccga aacgcgctaa aatctctcat      5040
     gataaaaacc aaaataacga cacgcctgaa aactatgacg ccgaaaaagt cgagacgacc      5100
     aatgagccgg acactaactt aacaaactcg caagataacc aattgaaatt cccaatagag      5160
     tcaaatacgg aaaacgaaaa cgttcaagaa gtcgagcctg ttataaataa agaaagaaaa      5220
     tatggaaaaa tttttgtaga atgtaaagaa caattgttta tgagaaaaga taattacatt      5280
     tatttcataa cttcagacgg aacgccgagt gacgaaggag cccgacagtt gcacacgcgt      5340
     aatgaattac ccagattttc tgagttagaa gccggggaaa ttaaaatcac gaatagaaat      5400
     aataaactac atttcgctat tgttacacgc ggcaaacaag ccttaagcac tactgagatt      5460
     ctcaataata taactgttgc attcaaagtt ttaaagtcat tgattgtgaa agaaaatatt      5520
     tgttctatta gcattgctaa gagcaaggat attgaaaacg tattatggga cgatgtgtta      5580
     attaaattga gacatttatt gaagggaata ccagtaaaaa ttataatttg cctaggaata      5640
     attagatata tagctgaaaa agatagagtt agaatcatgg aagaattaca caatacggct      5700
     ataggaggac acaagggagt caataaaact tataaacgga ttaaacaaaa atattattgg      5760
     gaaaatatta aagaagatgt acagaatttc atacgtaaat gcctcacatg tcaattgaaa      5820
     aagctagttc gagtcaaaac caagcaacct atgcaaatta cggatacgcc acaatcaccc      5880
     atggagaaaa ttagtctcga tatcgtcgga cccttccccg tatcgaaaaa tggttataat      5940
     aatatattaa caattcaatg taacttttca aaatattgtc tcgcgatacc tatcaaagac      6000
     gccaccgcgg aatctgtcgc cgacgcatta ataaaacgtt ttatttgtat ttttggcgca      6060
     cctcttacga ttctcacaga tcaaggaagt aatttcatgt caagtttaat gagacgagta      6120
     gcaaagaaat tccgtattaa acaagtaaaa accactgcgt atcatcctca atctaacgga      6180
     tccttggaaa gagcacatca ttcattaacc gaatatatta aaaccgcttt agataaagaa      6240
     acttgggacg aatgcttaga attagcgact ttttgttaca ataccgtgcc tcacgagggt      6300
     catcagttca cgccatacga gttagttttc ggacatttag cacgcgttcc ttcgaacgag      6360
     ccactcgagc cggaagatct cattcccacg tataatgatt acgttgtaaa ccttagtaaa      6420
     cgcttgaacg aactccaaag aattgctcgc gaaaaattaa ttgaatcgaa aattcgctca      6480
     aaatattatt atgacaaaaa aataaaccca aaagaattta gaataggtga tacagtttgg      6540
     ttacttaaag ggggaaaaca atataaatta gctgaccaat atgaagggcc gtatactgtt      6600
     gtcgatgttt ttaacaacca gcgaaacgtt aaaatccgaa tgaaaaataa gaaaattaaa      6660
     accgtaaatg caaatagact tcgagtttca tatatagagc ctgaggaggt ctaaaaatat      6720
     gcgttatttt aagattaata tatgtatatg tataaatata tctgcgtaca cacatactta      6780
     tatgcgcaca cacgtcgttt gtactcattt caaaagtatt aagtaaaaaa aaagcatgaa      6840
     tacgtgtatc cactaaacaa acgccactaa ccaaatcaag agtgaagagt tcaagtataa      6900
     ataaagaaag cgatatctcc ctctaggaac ataacacgag acgagacaat aacgccgttg      6960
     attatccagc cgacgaagca aaatggcaac acctacaatt caagacaata ctgttaaaca      7020
     aatattgtgt tacgggctga aaatgaggca agagtcccga caaggcatca ctcctgcata      7080
     ccaccgttcc ctagtcgaca acatagaatt tataacgtca attatgtaca acaataatga      7140
     aagtttccgc gaagctatag aatcaacttt aaacccagat aaccaacaaa agataaccta      7200
     ccgaaaaata aataaagcag catgcgaact catgcaacat cccgatttcc gaagtaaaaa      7260
     gaaggatgac aataatccat ggcgaaaaga atatgccact atggagagga gaacatttcg      7320
     atttgaaata ttacggagag aaagcttcga ggggtggtct gtaaaagaag tgtctccgaa      7380
     attattggca gccgaaggct tttactatac gcaacgcaga gacgcagttc gctgcttttc      7440
     ttgtagtgtc gaaattagtg gctggggaaa cagaggcaaa tcttaaccgg caaacagcac      7500
     atcggtgaat agagccagga aattcgtcca ccttgacatg gcataatatg aaacagtccc      7560
     gaattaggtc cagactcaca gcacattgaa gcacagggta acgatactag aaaaataaca      7620
     taaaaacgcg tcaaaataaa cactagtcaa actaagaaaa gaaaacaaca atatttacga      7680
     accgagatga caccataatt agtacgctta accatgatcc gagaagggct cgtctcgtaa      7740
     tgaaaacaaa caccacacca gccccagccc aaattatgac aaggctccca aggtaaatca      7800
     cttacttcaa tcggtttaat aacatcaatc acctaaagaa aaatcaataa caataaacaa      7860
     aataatgaaa taaaacgtag tagagcacaa tataaaaata ataaaaatat taaaattctc      7920
     ttacctcaca cattttgttg aaagtcggaa taaataactg taacagacac gaacaaacta      7980
     actgcacact actaaagcac tcgacagact gatgacagat cagcctgcat ctcgaggacg      8040
     agccagaaaa atcagagaaa tcgagcacct tagactagga aagaaagtgg ggaaaaacac      8100
     atgtccttaa gaaaaaggag cttgggaaag aaagtaataa aaattggaaa ccgacgaaag      8160
     cgcatgatgg gacctcctgc acacgccagg aagaagtata aatatatctg cgtacacaca      8220
     tacatgcgca cacacgtcgt ttgtactcat ttcaaaagta ttaagtaaaa aaaagcatga      8280
     atacgtgtat ccactaaaca aacaccacac cagccccagc cgaaattatg acaaggctcc      8340
     caaggtaaat cacttacttc aatcggttta ataacatcaa ccacctaaag aaaaatcaat      8400
     aacaataaac aaaataatga aataaaacgt agtagagcac aatatacaaa taataaaaat      8460
     attaaaattc tcttacctca cacattttgt tgaaagtcgg aataaataac tgtaacagac      8520
     acgaacaaac taactgcaca ctactaaagc acttgacaga ctgatgacag atcagcctgc      8580
     atctcgagga cgagccagaa aaatcagaga aatcgagcac cttagactag gaaagaaagt      8640
     ggggaaaaac acatggcctt aagaaaaagg agcttgggaa agaaagtaat aaaaattgga      8700
     aaccgacgaa agcgcatgat gggacctcct gcacacgcca gaaagaatgt tgaaatttca      8760
     ttttcaacat tctttttctg gtggggtgga attttattgc ataaaatcaa ttgaaaatat      8820
     aaattgtaaa ataaaaagag aaaagtactc ttagggcata acactaactc taataaatat      8880
     ctgcatatac taattaacat tctttatgtt acagttaact atcattcata tacaaacaaa      8940
     aattaaataa attatacacc tatcaacata tccctatcac actaacaaac attttttttc      9000
     cacatattgt aaataaaaaa tcacctttat tagtaatagt atacgaaaaa tacaaaataa      9060
     accattattg taaacatcct tctacatata tgtaaaatac gaaaaatatc cattattgta      9120
     aaaatttctt tttgtttcac ctatatgtaa aatacgaaaa gtatccatta ttgtaaaaaa      9180
     attttttcct tccttctata tgaaatctta tatgtaaaat gcgaagaata tccattgtct      9240
     accagtaatc acatatgtaa gatacgaaaa atattcatta ctgtaaatta acatttgcgc      9300
     aacgaaaaat catttctgta cacatcggaa actatgaaaa gaaaaacttt catcaaaatt      9360
     tatgtatcaa agaaaagtac cttgcaacaa attatgtaaa taaataatga tgtgcggaga      9420
     atgaaaatac ccatcattac ttataacaca cacacatact aaattttacg aacgtcgagt      9480
     ttcactcgtc cgttcttttt cgggcgggga gg                                    9512
//
ID   Gypsy-36_NVi-LTR repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1384-1384 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1294 BP; 444 A; 317 C; 274 G; 259 T; 0 other;
     tgtaatggaa tccccgattc cattacgcgc ctacgacacc aatttaagta ggtcacacaa        60
     tttttctacg cacgaaacaa gaaacacaca tacgtgagac actcgcgagc atcgtcatcg       120
     cagcagccgc aagaagcagt atttcccacc acaacgtatt cctacaaaaa taggattaga       180
     ggcgtagcga caaaccgcgc tctaggcgaa gatcatccga aagaatggct aacgccaaga       240
     aaaaaaaaat gacggcgacg aaataaaaag atgtcactga acgagtcgcg atattcctca       300
     cgaaaagcga cgaaaatcaa aatagctatg cgacgagcaa gcatcggtcg agcacgctct       360
     cccgaaaacg aatcgggaaa agctacacat gacagtacgc aggcgacgaa aagcagcagg       420
     agagctgtca caagacgctt ttcctaaaaa ctcaaggtaa taaaaatttt acgaggtcac       480
     gcaaagtcaa gagaaaagtc gtgagaatat taggcactcc taatatggaa aatcgaggct       540
     acagaatttc cagtatataa aggccgggag caaaagggtg caacatggtc agtttccttg       600
     aactcgtcat actaaacgaa tcgctgctag tcgccagatc cagtcgatat cagttatact       660
     attcaaatca gtatcgaatc agttagtcgc gagccagaac agcgcggacg aactttgtcg       720
     ccacaataaa actagtgcgc actaaaccaa ttaaaaagtg cggatacgtt aaagagttcg       780
     agaaagaata gcttatacaa aaactaagtg atcgtgtcaa gaataagaca agcgccactt       840
     tcaccgtcct ctctcatcac ggaaagagag ccgacacatc ggagcgccca tctgtcaaca       900
     cctgcttcaa agagggacaa gctaggagga ccgagacgca caccagcctg accgcactga       960
     accaccgacg ccaggctcca gagcgccaag gacccacagc tgcagcttcc tgctgagaca      1020
     tcgatacatc cacacacaca cacacccaca catattgtaa aaggtacttc tctctttctt      1080
     ttctaatcga gtgaataaaa tcgtagttgc tcttaaaatt ctaacggctt taaagtgatt      1140
     tcgttatccg gctccctttc ccggaaggca gtgaccgcgt ctgcggtagc caaaagggat      1200
     ttcttttgaa taaataaaaa taataaataa tagccgaaga tagggactcg acaccgtaag      1260
     tatattggtg ggttacgcac attccgacgt aaca                                  1294
//
ID   Gypsy-36_SiCu-I repbase;    DNA;    INV; 4473 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4473
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5058-5058 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..4471
FT                 /product="Gypsy-36_SiCu-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MSSDNSASSAASLGGNNANPTTQEEILRTLVNIAQAL
FT                 ATQATTTQVGATPNNVTHALRCLQLPILPAPEELTFPAFLDWKQRWKDYSN
FT                 SILLQQHPLTTQHGVLRSALHKDWTMLWSSGRLQIGEATQVEDAVEAVGAY
FT                 LRQKRNPILDRQAFHKRDQQPGESIDQYYAALRLLDDAAAHTIEITCTSCT
FT                 TTVRCPTCPGCDKALPLARQQQEMRIRDRLICGLRDPEIQRRVVTEQFSND
FT                 MTLDRVLKICVAMETSSTFGKEVSTFDEPTPTVNATSSYKRRQQQQPRKET
FT                 TEVKRQRQESSQPCRWCASTPSHRYDNCPARNVTCDNCGKLGHFRKACLRR
FT                 KQANANNIEQGAEQQQPTTVIPSNISMGQTQVYNDVTYRTNTVIVGSAQML
FT                 LPIDTMLNGVQCSIPWLADSGAGADLLPERDFKLLPAAARAALSPRVIHCV
FT                 GANGIGLGPIGTIKATLKLNNRSWETTVGVCQHLNAPLLSKQGCIALGLIP
FT                 KGWPHSMLAVGSQATASVIIPGRAIPHPPSTTTDTEGIKAAIMARHADAFD
FT                 DTVLRPMHGPPMKIELVEGATPCKRYRAYNVPFHWKDPVRKQLEEMVVKGI
FT                 IEKVPIGEPVDWCHPMVVVPKKGSSEPRITVDLTGLNKFVRRPAYPVRVPR
FT                 EVVASIPPGMRYFTTLDARHGYWQVPLDPSSRKLTTFITPWGCYRYCRNAM
FT                 GLISAGDEHNRRGDEALHGIPNVEKVVEDILIYDRDLDTHEKRVNDVITRC
FT                 QQHGITLNAKKFNFAEPETDWCGFHISSAGYAPAPHLYAALTNFPVPTNKT
FT                 DIRSFNGLVQQFEAFSHRLTEMCAPIRSLLSSKAAFVWEEPHQRAFQDVIK
FT                 ELCSSRVLAQFQPHQPLRLETDAAQSRGLGYALYQQQHDGSWRPLQVGSRY
FT                 VTSAESRYSATEVEMLAVVWAVRKCKRYLLGHPFELIVDHRPLIPIINNKT
FT                 LDELDNHRLIRFKEKLSSYLITAIWRAGVKHTVVDVFSRHPCSDPEEEDLQ
FT                 ANPDADPEVVMAVTIHDPDDGSRILSDPILQSLRTTAQQDSEYRRLSEAII
FT                 KGVNAKEELEEDLRPYWKVFHRLSLQDDLVLLGSRVLVPARFRAAILRTLH
FT                 SSHQGQERTLRRARQSVFWPGISNDIANVVKSCMECARFLPSQQKEPMVVE
FT                 PQPIYPFQHVGVDLFSHAGHEYLVMVDRYSGWPMVARCHSTDSIAIMRQLR
FT                 QWMADLGIPEKLFSDNGPQFSSQDFRQWTQRWNIVHSTSSPHYPQSNGLAE
FT                 ACVKAVKYLLAKSTTNGDVTSEVFLEGLMELRNTPRADGRSPAQLLFGFPT
FT                 RTKLPIHRSKFAEEWKSRAVACDQKAASLREKAKKRYDAGAEPLSELRTGD
FT                 VVLVQDHQSKRWNLLAEILERLPRGRSYLLRTESGRTLRRNRRFLRLFQPT
FT                 PQGPPSPEKREESPPPRRSSRQRRPPARFTNTVELVHSPNLEGG"
XX
SQ   Sequence 4473 BP; 1143 A; 1326 C; 1151 G; 853 T; 0 other;
     tggcgcagtc gacagtgctt ttcagtgatt ttttaaatcg ctaaattatc aaaatttcag        60
     ttattctgtg cttcgcgtcg agggatccac cgtcaccatg tcctccgaca acagcgcaag       120
     cagcgcagcg tctctagggg gcaacaacgc taaccctacg acacaggagg aaatcctccg       180
     gacgctggtg aatattgctc aggccctcgc cacgcaagcc accacgacgc aggttggagc       240
     aacgccaaat aacgtaacgc atgcgttacg ttgcctccaa ttaccaatac taccagcccc       300
     tgaggagctc acatttccag cattcctgga ctggaaacaa cgttggaaag actactcaaa       360
     ctcaatcttg ctgcagcaac accccctcac cacccagcat ggagtcctac ggtctgccct       420
     acacaaggac tggacaatgc tttggagttc gggacgctta caaatcggtg aagcgacgca       480
     agtggaggat gcggtagaag cagtcggcgc ttacctgcgc cagaaaagga acccgatctt       540
     ggatcggcaa gcattccaca agcgcgacca acagccaggg gagtccatcg atcaatacta       600
     cgccgccctc agactcctcg acgacgctgc agcgcacaca atcgagatta cgtgcacatc       660
     atgcaccaca acggtaagat gtcccacctg ccccggatgc gacaaagcgc ttcccctcgc       720
     cagacaacag caggagatgc ggatacgtga ccgactcatc tgcggtttgc gggatccaga       780
     aatccagagg agggtggtga ccgagcagtt ctcaaatgac atgacactgg accgggtcct       840
     caagatttgc gtggcgatgg agacctcctc caccttcgga aaggaggtgt caactttcga       900
     cgagcctacg cccaccgtca acgccacctc cagctacaag cgccgacaac aacaacaacc       960
     gaggaaggag acaacagagg ttaagcgtca acgtcaggaa tcatcccagc cctgtaggtg      1020
     gtgcgcatcc acgccgagtc atcgctacga caattgccca gctaggaacg taacctgtga      1080
     caactgcgga aagttaggac actttcggaa agcttgcctc cggcgcaaac aagccaacgc      1140
     aaacaatatt gagcaaggag cagaacagca gcagcctacc accgttatcc cctccaacat      1200
     cagtatgggc cagacacaag tctacaatga cgtgacgtac cgtacaaaca cggttatcgt      1260
     tgggagtgcc caaatgctgt taccaatcga caccatgctc aacggtgtcc aatgcagcat      1320
     cccttggcta gcagactctg gggcaggagc agacctcctc ccagagaggg actttaagct      1380
     tctaccagca gcagcacggg cggccttgtc accacgtgtg attcattgtg tgggagccaa      1440
     cggaatcgga ctgggcccca ttggcacaat taaggcaaca ctgaagctga acaaccgtag      1500
     ctgggaaact accgtgggtg tgtgtcaaca tctcaacgcg ccgctcctaa gcaagcaggg      1560
     gtgcattgcc ctaggactca tccccaaagg ctggccacac tccatgttgg cagtaggaag      1620
     ccaggctacc gccagcgtca tcatcccagg acgagcgata ccgcacccac catccactac      1680
     taccgacacg gaaggaatca aggcggccat catggcaagg cacgctgacg cgtttgacga      1740
     caccgtacta cgacccatgc acggtccacc tatgaaaatt gaactggtgg agggcgccac      1800
     tccctgcaag cgctatcgcg cctataatgt gccattccat tggaaggacc ctgtgagaaa      1860
     gcaactggag gagatggttg tcaagggaat catagagaag gtacccatag gagagccggt      1920
     agattggtgc cacccgatgg tagtggtgcc caagaagggg tcgtcagagc caaggatcac      1980
     cgtagacttg acggggttga ataaattcgt gcgccgtcca gcgtacccag tccgtgttcc      2040
     ccgggaggtg gtagccagta tccccccagg aatgaggtac tttacaacac tggacgcacg      2100
     ccacgggtac tggcaagtac ccctcgatcc aagtagtcga aagctcacca cgttcatcac      2160
     cccctggggc tgctaccgtt attgccgcaa cgcaatgggt ctgatatccg cgggcgatga      2220
     acacaaccgc cgaggcgacg aggcgcttca cggcatcccc aacgtggaga aggtggtgga      2280
     ggatatactc atatacgacc gggacctgga tactcatgag aaacgggtaa acgacgtgat      2340
     cacccgctgt caacaacacg gcatcacact caacgctaaa aagtttaact tcgccgaacc      2400
     agagacggac tggtgtggct tccacatcag cagcgcaggc tacgctccag ccccccatct      2460
     ctacgccgcc ttaaccaatt tccccgtgcc gaccaacaag actgacatca gatcattcaa      2520
     tggactagtg cagcagtttg aggcattctc acaccgcctc acggaaatgt gcgccccaat      2580
     cagatcccta ctatcatcga aagcggcctt cgtatgggaa gaacctcatc agcgcgcatt      2640
     ccaagatgtc atcaaggaat tgtgcagttc ccgagtgctc gcacaattcc aaccacacca      2700
     gccgctacgc ttggaaaccg atgcggccca gtcaagaggc ctggggtacg cgctctacca      2760
     gcagcagcac gatggatcat ggcgaccact tcaagtgggc tcccgttatg taacctcggc      2820
     agagtcgcgc tacagtgcca cggaggtaga aatgttagcg gtagtatggg cggtgcggaa      2880
     gtgtaagcgg tatctcttgg gccacccctt tgaactcatc gtagaccatc gtcccctcat      2940
     tcccatcatc aataacaaaa ctttggatga gctggataac caccgcctta ttcgcttcaa      3000
     ggagaagctg tcatcctatc ttatcactgc catctggaga gcaggagtga aacacacggt      3060
     ggtggatgtg ttctcccgcc acccctgctc ggatcctgag gaagaggacc tacaagcaaa      3120
     cccagacgcg gatccggagg tggtgatggc cgtaacgata catgatcccg acgatgggtc      3180
     gaggatcctc tccgacccaa tccttcagtc acttcgtacg acggctcagc aggatagcga      3240
     gtaccgccgc cttagcgaag caattatcaa aggagtcaac gcaaaagagg agttggaaga      3300
     agacctccgt ccatattgga aagtattcca tcgccttagc cttcaggatg accttgtctt      3360
     gctcgggagc cgcgtacttg ttccagcccg atttcgtgcc gccatcctga gaacgctgca      3420
     ctcgtcccat caaggtcagg agcgcaccct ccgccgcgcc cgccaatccg ttttttggcc      3480
     agggatctcg aatgacattg caaatgttgt gaagtcatgc atggaatgtg cccgttttct      3540
     accgtcccag cagaaggagc ccatggtcgt ggagccgcaa ccaatctacc cgttccagca      3600
     cgtcggcgtg gacctcttct ctcatgccgg gcatgagtac ctggtgatgg tcgaccggta      3660
     ttccgggtgg ccaatggtcg caagatgcca ctcaacggac tctatcgcta tcatgcgaca      3720
     gcttcgtcag tggatggcgg acttgggcat tcctgagaaa ctcttcagtg acaacggccc      3780
     acagttttcg tcgcaggact tccgccagtg gacccaacgc tggaatattg tccacagtac      3840
     gtcatcaccc cattacccac aatccaacgg attggcagaa gcctgtgtca aggcagtcaa      3900
     gtacctgctc gcaaagtcca caacaaatgg cgacgtcaca tcagaagtgt tcctggaggg      3960
     tctgatggag ttgcggaaca cacctcgtgc cgacggaaga agtccagcgc aacttttgtt      4020
     tgggtttcct acccgtacaa agctccctat ccaccggagt aagttcgcgg aggagtggaa      4080
     atctcgcgca gtggcttgcg accagaaagc agcctctctt cgagaaaagg ccaagaagcg      4140
     gtacgatgcc ggggcagagc cgctgtcgga attgagaacg ggagacgtgg ttctcgttca      4200
     agaccaccaa tcaaaaaggt ggaaccttct cgcggaaatc ctggagcgtt taccacgagg      4260
     ccgcagttac cttttgcgca ccgagtccgg caggacattg cgccgcaaca gacgtttcct      4320
     gcgcctcttc caaccaacac cacagggtcc accatctcct gagaaaagag aagaatcgcc      4380
     accacccaga cgatcctctc gccaaagaag acccccggca cggtttacca acaccgttga      4440
     attggtccac agtcccaatc ttgagggagg gca                                   4473
//
ID   Gypsy-36_SiCu-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-311
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5113-5113 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 311 BP; 87 A; 81 C; 62 G; 81 T; 0 other;
     tgagggacta cgggtcaaga tgccccatac aacccgccgg gagatgagct acgcgcatgc        60
     ggtccggttc ggtagaaacg gacagccgaa caatccagaa gcccagaggc agaactagca       120
     gcagatacga caacgagtct tggacgtcac cacattcaat cttcaccact tgttcattct       180
     cattacctat tctttctgag tgttcgtgtg tgagattttc tgctgtaata aaagactaat       240
     tatcataata attatctcct atcactctct acttcttatt catttaacgc gatcagaccg       300
     gcatcatcac a                                                            311
//
ID   Gypsy-36_SiOr-I repbase;    DNA;    INV; 4635 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4635
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 370-370 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..4633
FT                 /product="Gypsy-36_SiOr-I_1p"
FT                 /translation="MTSLKDISRISDNIQAAPFAIIKLFHKFLYEQDGDRS
FT                 SRKRVRNFQGFSYEQGSEQYNNKIEYANIFSISDLTSIANILLVDYTASKN
FT                 ELIKRICDQLLDINALKLSIENAEQSEEEEDEDIEDQISIISNTSSKYVPK
FT                 ISQNILQPHSSNHNLNFALTFRDVEDIIKPFDGTGPYPVERWVQDFESTSI
FT                 MLGWSDLHKFIFAQRSLTGLAKLFIESENNIRSWSTLKASLVREFSSKINS
FT                 ATLHKILSERKMKKEETVHEYFLKMKELASRGPVEEDALIKYVIDGIRDEN
FT                 SNKIVLYGASNITEFKTKLKIYEEIRKTSRGGNQQRYVANNDQQITRLVKC
FT                 YNCGQNGHKSSQCSSRHLGTKCFRCNGFGHKSFECTQSQQNRQRSSPAQNH
FT                 PRTTFTRPNNPNSPDCNQISLPKNDSVHKIFLINGLEVNALVDTGSAINVL
FT                 SEDLYRELENVSLKPNKIILHGFGQSKVETLGSFDAEIYVDNYQFFTQIYV
FT                 VSNNVMTESAIIGNTLIDQAEVTFNQDGITFTKLNPLQNMMSIEVSPNEFD
FT                 IGPINSSLRKEIENMLVEYHPEKIKETNIEMKIILKNDSPVYHNPRRLPFP
FT                 ERDIVDKQVEDWIQDGVIEPCNSEFSSQVVVTKKKNGSHRVCIDYRKLNRE
FT                 ITKDRFPLPLIEDQLDKLQNAKIFSTLDLKNGFFHVGVEESSRKYTSFVTH
FT                 KGQYQFLKVPFGLCNSPAVFQRFINQIFQPLISAGIVLPYLDDLIIPSANE
FT                 YEGISRLKTVLQIAREYGLEINMKKCQFLKRNIDFLGHVIENGKIFPSKYK
FT                 TDAVMKFPLPRTKKQLQSFLGLTGYFRKFIMNYSLKARALSDLLKKNSTFK
FT                 LEEPQIAAFEELKISLSQKPVLQIYQREAETELHTDAALEGYGAILLQRSQ
FT                 EDNQLHPVYYMSKKTTDAEKKYCSYELEVLAIIEALKKFRVYLLGIPFKIV
FT                 TDCAAFQKTMNKKDLATRVARWALLLEEYQYTIEHRSGTRMRHVDALSRNP
FT                 IMMISRETELRQRIKMAQEDDSEVKAIKEVLKEKPYDDFVVINDILFKIHD
FT                 GNNLIVIPRSMQTEIIRMIHENGHFATRKIEDRLNQEFFIPKVRSKIDKVI
FT                 GSCVPCIMNNRKRGKQEGYLNSIPKETIPLHTYHIDHIGPLESTSKNYKHI
FT                 LVIIDAFSKFVWLYPTKSTTAKEVIQKLETQRKVFGNPSVIISDKGTAFTA
FT                 HEFEDYCKDQNIFHGTITTGLPRSNGQVERINSIIISVLSKLSIEDPTKWF
FT                 KHVDQLQRVINSTYQRSIKTTPFELLTGVKMRDKNDLRIKEMLNEEFVAEF
FT                 QEDREDLRARAKKAIKEIQEENKKTYNLRRRPPRKYKKNELVAIKRTQMGP
FT                 GLKLKPKYLGPYKVTKVKPNETYDVQKTGFCEGPMETSTCAEFMKPWIPYE
FT                 DDLDDIDGSSEADDLQDGR"
XX
SQ   Sequence 4635 BP; 1828 A; 724 C; 823 G; 1260 T; 0 other;
     aaatttgggg gctcagcctg ggatataaga gagggaatta cagtttataa ataaaagttg        60
     acagtgaaat caaggtgaaa ttaaaagtaa acgacgtata agtaaaataa acattcagtt       120
     gtgagtagtg ttagtgtagt gagtagtgca agtgactgaa gataaagaga cagaacaata       180
     gacagtgaaa taaaaagaaa aacttgttta aaagtgaaca tagacatttt gatagacaat       240
     tattgacatt ttcgaaggca aaaagacatt ataaactatt tttacatcta tccatcgttt       300
     catccatcgt taagtgctaa tatattaaac aaaaatgacc agtttgaaag acatttcacg       360
     aatatcagac aatattcaag ccgcgccttt cgctataata aaactatttc acaagtttct       420
     ctatgaacaa gatggcgaca gatcaagtag aaaaagggtc cgtaatttcc aaggtttttc       480
     ttacgaacaa gggtctgaac aatacaataa taagatagag tatgcaaata ttttttctat       540
     tagtgattta acctccattg caaatatttt attagtcgat tacactgctt cgaaaaatga       600
     attaataaaa cgtatttgtg accagttgct agatataaat gcattgaaat tgtccataga       660
     aaacgccgaa caatctgaag aagaagaaga tgaagatata gaagaccaga tttcgataat       720
     aagcaacacc agtagtaaat atgtacctaa aatttctcag aatattctac aaccacacag       780
     ttcgaaccat aatttgaatt ttgcacttac gtttcgagac gttgaagata taattaaacc       840
     ttttgatggc acagggccgt atccagtaga aaggtgggta caagattttg aaagcacttc       900
     tattatgtta ggctggagtg atttacacaa atttatattc gctcagagat ctttgactgg       960
     attagcaaaa cttttcatag aaagtgaaaa taatattagg tcttggtcaa ctttaaaagc      1020
     ttctttagta agagaatttt catctaaaat taatagtgcc actttacata agattttatc      1080
     tgagagaaaa atgaaaaaag aagagacagt tcatgaatat tttttaaaaa tgaaagaatt      1140
     agctagtcgt ggtccagttg aagaagatgc tttaattaaa tatgtcattg atggtatcag      1200
     agacgaaaat tccaacaaaa ttgttttata tggtgcttca aacattacag aatttaagac      1260
     aaaattaaaa atatatgaag aaattagaaa aactagtcga ggtggaaatc agcaaagata      1320
     tgtagccaat aacgatcagc aaattactag attagtaaaa tgctacaact gtggtcaaaa      1380
     tggtcataaa tcatcacagt gttcatcaag acacttagga acaaaatgct tccgatgcaa      1440
     tggctttgga cataaaagtt ttgagtgcac acaaagtcaa caaaatcgcc aaagaagtag      1500
     tccagcacag aatcatccaa gaacgacatt cacgagacct aacaatccta attcaccaga      1560
     ttgcaaccag atcagtttgc caaagaacga ctctgtacat aaaatatttt tgataaatgg      1620
     ccttgaagta aatgctcttg tagacacggg tagcgcaatt aacgtactat ctgaagattt      1680
     atacagagag ttagaaaatg tttccttaaa gccaaataaa attattttac atggttttgg      1740
     acaaagcaag gttgaaacct taggatcttt tgatgcagaa atatacgtcg ataattatca      1800
     atttttcacc cagatttatg tagtttcaaa taatgtaatg actgaatcag caatcatagg      1860
     aaacacttta atagatcaag cagaagtaac cttcaatcaa gatggaatca cttttacgaa      1920
     acttaaccct ctacaaaata tgatgtcaat agaagtcagt cctaatgaat tcgacattgg      1980
     tcccataaat tcaagtttaa ggaaagaaat tgagaacatg ttagtagaat atcatccaga      2040
     gaagataaaa gaaacaaata ttgaaatgaa aattatactg aaaaacgatt cccctgtata      2100
     tcataatccg agaagattac catttcctga acgagatata gtagacaaac aagttgaaga      2160
     ttggattcaa gatggtgtaa ttgaaccctg caattcagaa ttttcaagtc aagtcgtggt      2220
     aactaaaaag aaaaatggtt cacacagagt atgcatcgac tatagaaagt taaacagaga      2280
     aataaccaaa gatcgctttc cgttgccatt aattgaagac cagttagata agctgcaaaa      2340
     tgccaaaata ttctcgacat tagatttgaa aaatggtttc tttcatgttg gagttgaaga      2400
     atcaagtcga aaatatacat cctttgtcac acataaagga caataccagt ttctaaaagt      2460
     accctttgga ttatgcaatt ctccagctgt atttcaacga tttatcaatc aaatattcca      2520
     accattaatc agtgcaggta tagtactacc gtaccttgat gatttgataa ttccatcagc      2580
     aaatgaatac gaaggcattt ccagacttaa aaccgtctta caaatagcaa gagagtatgg      2640
     cttagaaata aatatgaaga aatgtcaatt cctgaaacgc aacatagatt tcttgggtca      2700
     tgttatagag aatggcaaga tttttccctc taaatacaaa actgatgctg taatgaagtt      2760
     tccgttgcca agaactaaga aacaactaca aagctttttg gggttaacag gctactttag      2820
     aaaatttatt atgaactatt ccttgaaagc tagagcttta agtgatttat tgaagaagaa      2880
     ctccactttt aaactagaag aaccgcaaat agcagcattt gaagaactta aaataagctt      2940
     atcccagaaa cctgttttac aaatttacca gagagaggct gaaacagaac ttcatacaga      3000
     tgcagcttta gaaggttatg gtgcaatact tttacaaaga tcacaagaag ataaccaatt      3060
     acatccagtt tattacatga gcaaaaagac aactgacgct gaaaagaaat actgtagcta      3120
     tgaacttgaa gtattagcca tcatagaagc cttgaagaaa tttcgtgttt atctattagg      3180
     cattccgttc aagattgtga cagattgcgc agctttccag aaaacaatga acaagaaaga      3240
     tctagccacg agagtagcac gatgggcgtt actactcgaa gagtatcaat ataccataga      3300
     acacagatca ggaactcgca tgagacacgt cgacgcttta agcagaaacc caattatgat      3360
     gatatcaaga gaaaccgaac taagacaaag aattaagatg gcgcaagaag acgatagtga      3420
     agtaaaagca attaaagaag ttttaaaaga gaaaccctat gatgattttg tcgtaataaa      3480
     tgatatttta ttcaaaattc atgatggaaa taatctgata gtgatacctc gatctatgca      3540
     gactgaaatc attagaatga ttcatgaaaa tggtcatttc gcaactagaa aaatagaaga      3600
     caggctaaac caagaatttt tcattcccaa ggttagatca aaaattgata aagtaatcgg      3660
     aagttgtgta ccatgtatta tgaataaccg gaaaagagga aaacaagaag gatacctgaa      3720
     ttccatacca aaagaaacaa taccacttca tacatatcat atagatcata ttggaccttt      3780
     ggaatctaca agtaaaaact acaagcatat tctagttatc attgatgctt tttcaaaatt      3840
     tgtatggcta tatccaacca aatcaacgac agcaaaagaa gtaatacaga agctagaaac      3900
     tcagagaaaa gtatttggaa atccatcagt aataatatcc gataaaggta cagcattcac      3960
     agcacatgaa tttgaagatt actgtaaaga tcagaatata tttcacggta caataactac      4020
     aggtttacca agatcaaatg gacaagttga gagaataaat tccattataa tatccgtttt      4080
     atcgaagttg tctattgaag atccaactaa atggtttaaa catgttgatc agctgcaaag      4140
     agttattaat tcaacatatc agagaagtat caaaacaaca ccttttgaat tattgacagg      4200
     agtaaagatg agagacaaaa atgacttacg aatcaaagaa atgttaaatg aagaatttgt      4260
     agcagagttt caagaagaca gagaagattt aagagcaaga gctaaaaaag ctataaaaga      4320
     gattcaagaa gaaaataaga agacttataa tttacgaaga cgtccaccaa gaaaatataa      4380
     gaaaaatgaa ctagttgcca taaagagaac tcagatgggt cctggtttaa agttgaagcc      4440
     gaaatacctt ggtccataca aagttactaa agtaaagccg aatgaaactt acgatgtaca      4500
     gaaaaccggt ttttgtgaag gcccaatgga aacctctaca tgcgcagaat tcatgaagcc      4560
     ttggattcct tatgaagacg acctagatga tattgacgga tcatctgagg cagatgattt      4620
     gcaggacggc cgagc                                                       4635
//
ID   Gypsy-36_SiOr-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-267
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 404-404 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 267 BP; 71 A; 59 C; 63 G; 73 T; 1 other;
     tgtgggatcg cgcctgaata cgcccctggc gtagacmgcg cgcgcaaggt caagccgacg        60
     acgacgagtg cagcgccgac gcgagaagaa gtcagttgag tttgagtttg atggtgattt       120
     accttgtcgg gagctggcgc acgacgaacg acgaaattac gacgaaaata cgacgcgatt       180
     attaatctat ttcctttatt ttattttgtt taaataaata gttaaattta taaactcttt       240
     aatttcctct cctgccagta tcccaca                                           267
//
ID   Gypsy-36_SpEx-I repbase;    DNA;    INV; 4502 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4502
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4105-4105 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4502 BP; 1510 A; 792 C; 855 G; 1345 T; 0 other;
     tcagaagtgg gattgtgtcc aacgttctaa tacattttat aatttcagga tggacctccc        60
     tgttttacaa gatctgctta aagcgattaa agatgctgtg tccggcactc ggcgcagaga       120
     cgatgacgtt gccctgccga ttttcgaccc gactaccagt gacctgggtg ccgagtcatg       180
     gtgcaacaat atcgagacac tctccaagga atttggctgg agcagcgtag caactgttgc       240
     aaaggcaggt aaggccctaa aagggtctgc attattatgg ttcgagacat gggatcccgt       300
     agagggccgg tcctgggaaa acctacgtac ggaattaact gctttatatc ccgaaaaaag       360
     aaatcttgct gaaaagctcc aaaaggctat attgtatact tctgaatctt ctgactccta       420
     ttgtgaatat gccagagaaa aattgaggct attacgtaat acaaagattg cttttaccga       480
     gtcgcagtta atagatttag tttgtggaaa tataaccgat gtaaatgtaa aaatggcatc       540
     ttttaacagc aatgtaaaga ccacctctga acttattgct ttatttactt cctatgcaaa       600
     aataagaaag agaccttcag agtcaactaa caaagatagt tcaacctacc ctaaacgtcc       660
     tagaatagaa acgcgatcta atgacgtgaa atgttatacg tgtggcaagt tagggcatac       720
     caaggcgcaa tgcaatagaa aagacactac gattaacaca caaccaaaca aatcggaaac       780
     attagaaata aagcctgggg agtttgttaa aaaattttgt acgttttgca aaaaacctgg       840
     tcatatggat tcctattgca gattcaaacc taaaactgat aatagtaata acaattctgt       900
     cactgaaaaa gaggtcaatt ttttagacaa ttgaatctaa aattaacacc agtgtctatt       960
     aataatttta tcataaattc gcttatagat actggggcta attgcagtat aatcaaagac      1020
     tctgtagcaa agcgccttgg ttgccatttc tccccatgct ctttacatat tagtggagta      1080
     ggaaaaggta gtctaaatat atctaataaa attatggtac cagttacatt tgatgatttg      1140
     tgtattgaat tagatatttt tgtggttaag gacactgact gtagttacga tcttctaatc      1200
     ggtagaaatg ctattcaaca tcctgatatc gaaatcgtga ctgattcatt aggttcccgc      1260
     ttagtacgaa aatatatacc cgagtctagc tttgaaataa ataactttca aacacatagt      1320
     aacgaaaatc cattttcaga actttcggta acattggcac atctagatac tagtttacag      1380
     aataagataa aagctatttt tcaaaagtat ccatccgttt tagaatcaat tggtagtgta      1440
     aaaaccggtc aattagagat aaaattaaaa aaagacgagg ttgtttatta tagaccgtat      1500
     agaatggctc caattgagag agagaaggtt aaagagttaa taaaagactt attagataaa      1560
     caaataataa aggaaagtaa ttcaccattt gcaagtcctg tgattctagt aaagaaaagt      1620
     gatggaagtg atagaatgtg tattgattac agagcactaa ataaattaat agaaaaagac      1680
     agataccctc tccctctcat tgaagaccag atcgataaat tagggcaatc ggaactatac      1740
     atatccatcg atatgaaaaa tggcttttac caaataccta tttctaagaa ttcaaccaaa      1800
     tacacggcat ttgtaacgcc agatggacat tacgaatttt taaaaaatgc catttggcat      1860
     ttgtaatggt ccatcggtgt ttcaaagagc aatttctaaa gctgttcgac atctaaagtt      1920
     tcttcttgtt tacatggatg atattttaat tccatttaat agtactgtac aaggacttga      1980
     ttatttggaa caaacaattt cggcacttag ttgtaatggt ttcacaataa atcttaaaaa      2040
     atgtaaattc tttgtagata atattgaata tctgggtaga cacatatctc gccatggtgt      2100
     taggcctagt gaatctaaag taactgcctt ggtcaattct cctgtgccca gtaatattaa      2160
     acaagttaga caatttatgg gtctatctag ctatttccgt aagtttattc ccgatttcgc      2220
     ttcacgaaca tcttgcatta ctaagctaac taaaaataat caaaaatggg aatggggtcc      2280
     cgaacagaat acagctcgaa aatatgtaat agattgcctt atttccaagc ccctattgac      2340
     tatttttgac cccaagcatc caacagaact acacacggat gccagttcaa tagggtatgg      2400
     agcaatactt ttgcaaaaaa tcgataacgt aaataaagta gtggcatatt atagtaaacg      2460
     gacaagtcca actgaatcca aatattgttc ctatgacctg gaaacattag ccatttataa      2520
     tgccctaaaa cactttagag tttatctgct tggtattgaa tttattatta ttactgattg      2580
     taatgcaata aaatccacga tgacaaaaag ggatttatct ccaagagtag ctagatggtg      2640
     gacgtacatg caagattttc gatttgaaat taaatataaa aagggaaaat ttatcagtca      2700
     cgttgatttc ctaagccgta actctgtcga aatcccagta ccaaaacgta gacctccgat      2760
     tcctgaggtg aaccttattg aagtctctga taataatagc tcccagtctt ggttaaaaat      2820
     agctcagcag aatgacccag agactcggac tcttatttct cagttggagg caggtgatct      2880
     agataacaac caatatttaa taaaaaatga cttgttacat tataaaaccg accccgatac      2940
     ggaaccgaaa ttgtttgtcc caaaaggtta cagattaagc ttattgaaat tgttccacga      3000
     tgaaaactgt catgtgggtt tcgataaagt cctgcataaa atacgagagt atttctggtt      3060
     tcctggaatg gcaacattta tcaaaaaata tatttctcat tgtttaatct gcacagaaag      3120
     aaagggatgt tctggtccta agcaaggctt gctacatcca attgataagg ctgctattcc      3180
     ttttcacact ttgcatttag actgcaccgg gccattcacg acaaccagtg aaggctacag      3240
     acatgtatta ttactggttg atggttttac taaattttgt ttgttaaaac cgctcaaaac      3300
     gctaagtacc catgaattga tacctataat tagagaaatt gttacattat ttggtacacc      3360
     gtctgtagtt atcactgatc gtggcacaaa ttttagttca aaccaaatcc gaaacatgtt      3420
     tagagagtta cacatcgaac accacatgat agctacgggc acgcccagaa gtaatgggca      3480
     agttgaacgt tacgtagcca ccataatcaa tatgttaagt actacttgta atgacttgtc      3540
     agattggccg aacggattgt ggaaagtaca gcaatccata aatactacca tacaaaaatc      3600
     cactggcttt tcacctttgc ggttactgat aggtgtagaa gcaaacatac ctattgtaca      3660
     agctcgatta aatgatgttc ttgatgatga aaaccggcaa cttaacatcg atgtgcaagc      3720
     tgatcgcgaa cttgctaggc aacgattaca attagtatca gaaaaattta aatcacgttt      3780
     tgattctgtc agacgaaata ataaaaatta cagcataggt gatttggttt acgtcagcca      3840
     agatcatagg cgaaatgata aattagcacc aaaatttaaa ggtccctatg agatttcttc      3900
     aaatctccca aatgatcgct atgctctgaa gggcttgggt aacctgagag atatttctgt      3960
     ggcaaaagaa aaattgcgat tttggcctgg agaatgggtc gatgagaata ttgctgttga      4020
     aagtgccatt taatttatct aaatgatatt atgaccaaat agtttaaatg tgtgccatgt      4080
     tttaattttt gtaaacgata tgtctttatt ggtacaatgt tttcaatatt tccgctgtta      4140
     ggctgtaact tggtgctgat tggcctcatc ggcagcggat gaatgtgatc agcatgtcta      4200
     ggttacaggc ccaatatttc cgctggtcgg ccacctactt ggtgccaatt atctcaccgg      4260
     cagcgggtga atgtgattgg catgtctatg tatctggcaa atattcgctg gtcgcacttg      4320
     tttggtgatt ggtctatctc aaaagcagcg attgaatggg accatcatgt ctatgcaagt      4380
     agcattagtt gatgaatatg aaacattgta tgaataaaat aaaaatgtgt gaaatatata      4440
     taagttatta aaatgctgat tgtaatatat acttcgagga cgaagtactg tcagtatggc      4500
     cg                                                                     4502
//
ID   Gypsy-36_SpEx-LTR repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-723
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4165-4165 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 723 BP; 242 A; 84 C; 98 G; 299 T; 0 other;
     tgataggtta ggttatttaa ttattgccaa ctaatggttt ttgatcacaa tttgttgttt        60
     atttttaagt aaataggcta taaaatgtta ttacttacat tagataatag tttttaatgt       120
     tttagtgaat ttaatattca aattgtttac ctaaaaaata tttgaattga ataactgcca       180
     aacgaccgtt ggccgttcgg tataaataca gcacgtcggt cgaatatcac acattcgatc       240
     gtgagctgcg gagctgtgag gatctagcga gttgagtaag ctatttattc taataatttt       300
     attattgttg taattatgac tgttattata tattacatat cttcccatat tttgtgtaac       360
     tgttataatg tattaaattg tgtataattg tacttaattt agaattgaag taagaaatgt       420
     taaatattat tgtgttaata tttttgcctt gatttataaa ataagattat gaaataatgt       480
     actttaatta tcatttaccg ccctatataa ataaaaataa tatatgttga aacggttgtt       540
     ccttattttt attaatatgt atctaccaca gtcaccgata atttagaagc atttactata       600
     tacatttcat ttcttatcaa tcgttacttt cgcatttata atattagttt gagataaaat       660
     aaaatggcat attatatgct tacatttgtt tatttcaaac tctatgactt tcaaaatcta       720
     aca                                                                     723
//
ID   Gypsy-36_TrNi-I repbase;    DNA;    INV; 3998 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-3998
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 239-239 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 3998 BP; 1203 A; 1073 C; 881 G; 834 T; 7 other;
     ttggtgaccc cgacgaagaa caccacgatg caagacaaaa gtgatcacgc gaacgcagcg        60
     agccaagatg gcggcgagaa acacctcgaa acattccgcg tgggcgtgag gatacctccg       120
     ttctttccgg agaagccttc actttggttt tcgcaaatgg aagcacaatt cgcgctctca       180
     aacataaagg cggatgacac aaaattttat tacgtcacag gccacttgga cccgcagtat       240
     gcttccgagg tacaagaaat tattgaaaac cctccagccg ctaacaagta cgagaagctc       300
     aaggcagaag taattaaaag aatgtcagcc tcacgcgaga agaaggtaaa acaattacta       360
     atgcacgaag aactcggcga ccgcaaacca tcgcaatttt accgccattt attaaacctc       420
     gccggaccag gcgtccctga agaatttctc cggaccattt ggacgagtcg tctaccaagc       480
     ggcacgcagg ccatcgtcgc ctcgcagtcc aagactcaga tggaagaatt ggcagagcta       540
     gcagaccgaa tcaatgacgt cgttggaccc caggtagcat gtacatctgc cgtcgccaag       600
     gcaacaccct cgagcagtgc gaaccccgag atagcggcac tggccaggca agtcgaaaaa       660
     ctgacccaaa aaatcgaccg catgtcacga ccgcgacaaa gatccagcag tcattcaaat       720
     catcgctcga gttcattaag atcgcagtcg aattacagta aattcccact ttgctggtac       780
     caccaaaagt ttggagaacg tgcgaagaaa tgtcagaaac catgcgacta caagacggcg       840
     gaaaactcga agggcaatca gtaatggcga ccaacgattg cccgagcacc ggtcgcttat       900
     ttgtctccga tcggagatca aagacgcaat ttttggtcga caccggcagc gacctttgtg       960
     tctacccacg agtagcatta ccggggcgac gtgaaactat ggattaccag ctgtgcgcag      1020
     ctaacggtac accaatcaaa acatatggtt atattaactt aaatttaaac ttggggttgc      1080
     gccgtgactt tgcttgggca tttattgtag ccgacgttac gaaagcgata ataggagtgg      1140
     attttttgtc ttattacaat ttaattgttg attgcagaaa ccaacgtttg ttagacagct      1200
     atacaatgct tgcgaccccg gcttcaccta tcggttcgtc tgacattatt tcctcggtta      1260
     aagtaagtat tggagacacc acataccata acatactacg gaaattcccc gacataactc      1320
     gaccacacgg catacgccgt acattaacac accatacagt ccaccacata cagaccacac      1380
     ccggaccacc agtttcatgt accccacgac gcctcgcccc tgacaaatta aaaatagcaa      1440
     aagatgagtt tgaagcgatg ctgaaagacg gcaccgccag accctctagt tccccatggt      1500
     catcaccatt acacctggct cctaagaaga acaacggatg gcgaccctgc ggtgactacc      1560
     gcacgcttaa ctccaggacg gtacccgaca attacccgat ccgtcacata cacgatttcg      1620
     cgcacagcct ctcagggtgt acggtcttca gcactataga cctcgtaaaa gcatacaacc      1680
     agattccagt aagtccagag gacattccta aaaccgctat tacaacgccg ttcggcctct      1740
     acgaattccc atcatgacgt ttggccttcg taacgctggc cagacgtttc agcggttcgt      1800
     cgatgagatg ttgcgtggac tggacttctg ctacgcctat ctcgacgatt ttttagttta      1860
     ttcgaaagac cagaagacac atgaagacac ctacagcaac ttttcactcg cctacgggaa      1920
     tatggtatgg taatcaatac ttctaagtgc atattcggag taaaagaagt gactttcttg      1980
     ggttatagga tctcagctga aggtaccagc ccgctaccgg agaaggtgga agccatcaaa      2040
     aaatacccgg cgcccaaaac cgtccgggaa cttcgcagat ttttagggat gctaaatttc      2100
     taccggcgat ttatacccga tgcagcgcaa caccaagccc ccttaaacgc tctattggta      2160
     ggggcagtaa aaggctctta cccggtgcat tttaccactc tggaaatggc ggccttcaat      2220
     aactgtaagg aaggcctttg caaagctgcg atgctcgccc atcccgattg cgaagccaaa      2280
     ctagcagtag tgacagatgc ctcagacact gcaatagggg cagtgctaca acagtgcaag      2340
     gaccaggaac catggcaacc gttagcattt ttctcccgca aactaagtcc ggcgcaaatg      2400
     aaatactcac cttacgacag agaactactg gcgatctacg aagcaataaa atacttcagg      2460
     catatggtcg aagcacgaaa ctttgtcatt tacacagatc acaagcccat atgtttcgcg      2520
     ttccactcac gaaaggaaaa ttgctcaccg agacagttcc gccacctgga ctacatatca      2580
     cagtttacaa cagatataag gcatatatca ggcaagaaca acgtcgtcgc tgacagcctc      2640
     tcaaggatcg aggagataac acagccggta gacttataca agttagccga atcacagaag      2700
     cacgacactg agttggaaca gctgcttagc aataacgcct ccttatgcct tactaaagta      2760
     aaactgccag gatcggagac cgaattgtac tgtgacgaga gaagcaagat acctagacca      2820
     tatgtcacaa aggaatatcg acgcagggtg ttcgacagcg tacactcgtg gagccaccct      2880
     ggcgcaaacg caacaatcaa aatggttacc gaacgatacg tttggccagc agtaaagaaa      2940
     gactgcagag aatggagtcg ctcctgctta gcatgccagc gagcaaaggt tacccggcac      3000
     gtctcatctc caataggaac cttcaagctg ccaaaggcta ggttcaacca catccacatc      3060
     gacctaatag gcccactgcc gctatcacaa ggataccgtt attgcctcac agccatcgat      3120
     cggttcacac gttggcctga agcgatacct acgtctgaca taacagcgga aacagtggca      3180
     aaggccctag tgagtggctg gatttctcga ttcggcagtc ctgttgatat agtaacggac      3240
     cgcggacgac agttcgagtc cgcactattc aagcacctgt cggaaatggc cgggtttcaa      3300
     cacaagcgta cagcagctta tcaccccgct tgtaatggcc tcatagagag attccacagg      3360
     caactgaagg ccgccatcac ctgccactcc acagataact gggtcgaatc tttgccgcta      3420
     gtactactag gtataagaaa cgcatgcaaa gaggaccwag ggtctacacc agccgaaatg      3480
     ttgtatggcg aaacgcttag actaccaggg gaactwttac agccacaggt tgatgacaca      3540
     ctggatatgt cagactatgt ggcacgatta agggcatttg caagaaaatt gcwaccgtca      3600
     ccagcatccc gtcatggtaa tagaccaaca ttcgtkttca agaatctagg atcgtcgagc      3660
     cacgtatttc tcagggatga aacatcaggc tccctaaaat cgccatacac agggccacac      3720
     aaagtcttac aacacggaga caaaatattc aaactcctcg tcaatggcaa aacagtcaca      3780
     gtttctatcg acaggctaaa acccgcctac atgttacatg atccagacac cctcacaaac      3840
     awcaacacaa acacgccagc caccacacta caaaaatccg tacccaccaa caaattaccg      3900
     gaaawcccag gaactgatgt cagaacgacc aaatctgktc gacaagtcca ctttccagat      3960
     tattaccgcc cgtagtgacg gtctctggag gggggtga                              3998
//
ID   Gypsy-36_TrNi-LTR repbase;    DNA;    INV; 514 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-514
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 193-193 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 514 BP; 124 A; 122 C; 92 G; 176 T; 0 other;
     tgtggtgtaa atatcgttaa ttaaaaacaa cggctaaaaa ataaatattt taatattata        60
     ttgttgttag ttttgaatag gtaaaattaa aatctgtatg ttcgtcggac aagcacaccg       120
     tattttatta ttagtgatcg aaccggtcgg cggctcggtc gtcctattgt ttcaacgcgc       180
     gaggtgggga ctcgcattcc actaccgcgc gcgcgcatca ttgtaaaccg accgctggct       240
     agtcaactta tggccttcta cgcgatcact gtgccactct gttcgctgct gtgctttcgc       300
     tttaccttaa catcatctcg ctgttattca tttcttaccg ctctactcct tctactcctc       360
     ttgtgaattt cttcatcctt ctcgtgctgt ggactctaac tatcaacaaa tctattgtgt       420
     cgctatcgcc tgtacctaat taataaactt tggtgtcagt gtacaatttt cgttatttat       480
     ctccgcacac gattcccgaa gaatactagc taca                                   514
//
ID   Gypsy-36_TrVa-I repbase;    DNA;    INV; 7345 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-7345
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 281-281 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           683..1852
FT                 /product="Gypsy-36_TrVa-I_1p"
FT                 /translation="MSILKPSILDEVASKLFYPNLRMEGQIYELQQIVANL
FT                 QAQLEENNNRRPKISKIYFDGIPLFSGNPETLSRFASVCENIIHNFYDNVD
FT                 ARNPQNHLILDNILAKITGEAAQKIAKCDLSSWALIKKALLDNYADKRDMG
FT                 TLTRELYQINQQNNETAFDFLNRLEKHQNLIIAYLDTHTVVCQEATPVLKR
FT                 YHEILGTKQCLDGLKNPLQQYVKSRKPASIDEIHNILMNEYQKEASYKNFS
FT                 TISIPSSSQAKSKNFQPQFNRNQNNNFPQKNNSNNFGTANQANHWPTKPQN
FT                 QNFYRPSGSNNVPTNQPIPMSGITRNTHLPRTSPQKFNLETQSENPEEIFE
FT                 ENQFAETEENSTENQENIEFESQECSAEDHSVFQQDASVNQMTLNAL"
FT   CDS           1795..5595
FT                 /product="Gypsy-36_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RSFGFSAGCLGESNDPECLISLSETILPYVIFPKFNL
FT                 MFLIDSGSTSSFIDPLIAKKLFSIERNIRPLTVNTIHGETKIHESTRLTPI
FT                 DLKPKFPLRFHLMKFHRFFHGLIGSDVLRLLKADICYSNNTLRTPDAKMKI
FT                 CYHRTGPKLSHVIAKANSATQVKLKVKSDAPEELLIPKLQITESCAIPSCI
FT                 TESKNGEITVIVNNHSDQDIEFVQKNYVPFANLNHFSVGNSVRKTRAKKKR
FT                 KKKLNPNFHYFNTEPSFDFSLLRTDHLNSEEKHALKNLTQEFSDIFFVEGQ
FT                 PLTFTHEVKHEIRTQDENPIFTKTYRYPQVHKEEVKRQIAQMLKSGIIRPS
FT                 YSPWSSPVWIVPKKADASGKKKWRMVIDYRKLNDKTVADKYPIPNISDLLD
FT                 KLGKKHLFYYLRPSERFPSNPSPPKIVFKKLHLAQRMDTLNFLRMPFGLQN
FT                 APSTFQRMMDSVLAGLQNYICLVYLDDIIIFSSSLQEHIKNCRLVFERLRK
FT                 FNLKIQLDKSEFLKHEVDYLGHVITGKGVKPNPEKIRAIQDFPIPKTPTQI
FT                 KSFLGLLGYYRKFIKDFSKITKFLTACLKKDAQIPFENPKFIEKFQRCRDL
FT                 LCNEPILQYPDFSREFILTTDASNFALGAVLSQGNVGNDLPICYASRTLND
FT                 CETRYSTIEKELLAIVWATKVFRPYLFGRKFKILTDHRPLTWLFSLKNPES
FT                 KLARWRIKLEEYDYSVEYKPGKKNLNADALSRIELQFNMIVPESPALEDIL
FT                 NLDEAEDSLNNHEIDDLDSIAVNVGELDTFTEIGAPPNFRTHPSSQTVHSE
FT                 EESPIQNIPITERAINYSKNQIIFKLTEDKVAKIKTVKMFSKTRNEKTRVV
FT                 FELNEEGYRAELKSLLNEKINPKLKYKLYFDPDSLYPKITKIIQDHFQNLQ
FT                 LEKSTKLLEDVEEPERQMQIILDYHEGKNNHRGIIETEAHLQRKYYWPNMR
FT                 NSIQTFINNCETCNLAKYDRNPYHLEFEKTPTPSKPFEIVHMDLLTIENHN
FT                 FLTLTDSFSKYSQAYLVDSKQGLEVIDKFLVFCNHHGCPKKIVTDKGPEFN
FT                 NSLLKEFCQTHEIQFHVTSSDHPQSNGLVERFHSTLLEHCRIFRLLPKFKN
FT                 DPIQLVVQYGLAAYNNSIVNSTKLTPHEIITGHLETEKFLTTRNSPTTQAY
FT                 VEKHKSYCKKLYDLIHNRLEQNKESYLSKANQKRQKAPNQDPLEVFQRNSR
FT                 GRKKTGPKFILRPVQQKIDPKTLIVKNPQKSAGEKLRLDQIKRLPRNFVSV
FT                 ADVPTT"
FT   CDS           5831..7333
FT                 /product="Gypsy-36_TrVa-I_3p"
FT                 /translation="NLENIELSNLEKLQFLNPTRVKKSLNFLGTGIKFISG
FT                 NLDANDGDKYDTAIDSIRKGQIILENQVRTQYSLATQSVEQFKENIAKIQK
FT                 NEDLIKIQLETFNAFIWNQTSSTAIKIQAEETLSEFALDFLTISGMISELE
FT                 NSVAFCYANVLHPSIIKSDDLISELRKVQTKTNVTFAVPINRENILNLEKS
FT                 VKVHCQRQGSLLYYILSIPLNEKIAYEYVRLVPVPVFVRSEYMISRPVRQF
FT                 IIRKRATMFSSITPCIFLKDQLYQCELGNFSPANQCEEEIFDGKSDACPHT
FT                 MIDSPTTYVNLIPETQSFLGFLPQQRTIEIICPTFQEQIKISGSYLRQPFD
FT                 CNITIENQTLQVSTSKKMYAPIFIPNVVNTETFKIPQKNIDLEKLEFKIDS
FT                 TKFLPPYLDTLYSDIPTHYLWTSVGSLFTVSIILIVYCLFRKFSKGFKNMK
FT                 INEVVPKILYAPRNLESCLIQASVPVVNEPKPNATPTLDEKWYYPGSFPVR
FT                 TDFSK"
XX
SQ   Sequence 7345 BP; 2618 A; 1514 C; 1211 G; 2001 T; 1 other;
     ggcgcagtca cggtaggata ccgtcagaaa attcatcgat aaattcatcg cgaattttat        60
     caccgatttt cgtgtgttga tccacttcag acggatcctc gaaccccaaa gataaacact       120
     cttttgtaga aactgatttc atcacgaact tcaggctaac ttcaaaaact tttatcatat       180
     ctgatttcat cacgaacttc aagctaactt caaaaacttt tatcatattt aaacgcctga       240
     atcttccgaa acacagttgt caacgaacga ggcattgacc cctccaacga acgaggcatt       300
     gacccctcca acgaacgagg cattgacccc tccaacgaac gaggcatatt gacccctcca       360
     acgatcaaaa ttccaaattc tctcaaggtg acctcaattt aaggaaataa ggaccctcga       420
     agcaacccac gatcaaaatt ccaaattctc ttaaggcgac ctcaattcga agacccgcaa       480
     aaaaaatctc atatcaaaac tggcaagcaa atctcgcatc aaaattggca agcaaatctg       540
     acaatgaaat ttttcatcat tttactgtaa gtcatatatt ctgatcagcc ctttgtccaa       600
     agaccagtgc ccggtcagta gtattctctt tgatatattg catgccgatc cagtgcccgg       660
     atcatcccat taaccccttt ttatgagcat attgaaacca agtatattag acgaggtagc       720
     ttcgaaatta ttttatccca atttgagaat ggaaggccaa atttacgaac ttcaacaaat       780
     agtagcaaac ttacaagcgc aattagagga gaacaataat aggaggccca aaatttcaaa       840
     aatttacttt gatggtatcc ctttattttc aggaaaccca gaaactctca gtaggtttgc       900
     atctgtatgt gagaatataa tccacaattt ttatgacaat gtagatgcta ggaatcccca       960
     gaaccatcta attcttgata acattttggc aaaaataaca ggagaggccg cccaaaaaat      1020
     cgctaagtgt gacttgtctt catgggctct cataaaaaaa gcattattgg acaattatgc      1080
     agacaagcgt gacatgggca cgctcactcg cgagttgtac caaattaatc aacaaaataa      1140
     cgagaccgct ttcgattttt tgaacagatt agaaaaacat caaaatttaa ttatagccta      1200
     cctagacact catactgtag tttgtcagga ggccactcct gtgcttaaac ggtatcatga      1260
     aattttgggg accaaacagt gtcttgatgg actcaagaat ccattgcaac aatatgttaa      1320
     gagtaggaaa cccgcatcta tcgacgaaat ccacaatata cttatgaatg aatatcaaaa      1380
     agaggcatct tacaagaatt tcagtactat ttccattccc tctagttccc aggcgaaatc      1440
     caaaaatttt cagccacagt tcaacaggaa tcagaacaac aattttcccc aaaaaaataa      1500
     tagtaataat tttgggaccg caaatcaagc caaccattgg cccactaagc ctcagaatca      1560
     aaatttctac cgcccttcgg gmtcaaataa tgtaccaacc aatcaaccta taccaatgtc      1620
     cggaattact cgtaacactc atttgcctag aactagtcct cagaaattta atttggagac      1680
     gcaatcagaa aaccctgagg aaatttttga ggaaaatcaa ttcgccgaaa cagaggaaaa      1740
     tagtacagag aatcaggaaa atatcgagtt tgagtcacaa gaatgctcag ctgaagatca      1800
     ttcggttttt cagcaggatg cctcggtgaa tcaaatgacc ctgaatgcct tataagcctc      1860
     tctgaaacta ttttgccata tgtaatattt ccgaaattta accttatgtt tttgatagat      1920
     tcaggatcga ccagctcttt tatcgatcct ttgatcgcaa aaaaattatt ttcaatagaa      1980
     aggaatatca gacctttaac tgtaaataca attcatggtg aaacaaaaat tcatgagagt      2040
     acccgtttaa ctcccataga tttgaaacca aaattccccc tccgatttca cctaatgaaa      2100
     tttcatagat tttttcatgg attaatagga agtgatgttt tgaggctctt gaaagccgac      2160
     atctgctata gcaataatac tttaagaacc ccagacgcaa aaatgaaaat ttgctatcat      2220
     cgcactggac caaaattgag tcatgtgatt gcaaaagcta actccgcaac tcaagttaaa      2280
     ttaaaggtaa aatccgacgc accagaagaa cttttaattc cgaaactcca aataaccgaa      2340
     agttgtgcaa tcccatcctg tattaccgaa agtaagaacg gtgaaataac agtaatagtc      2400
     aataatcatt cagatcagga tatagaattt gtacagaaaa actacgtccc ttttgcaaac      2460
     ttgaaccatt tttctgtagg caatagcgta agaaaaacga gagcaaaaaa gaaaaggaaa      2520
     aaaaaattga atccaaattt ccattatttt aatacagaac ccagctttga tttttcttta      2580
     ctcagaacgg accatttaaa ttcagaggaa aaacatgcat tgaagaatct gacccaggaa      2640
     ttttctgata tattttttgt cgagggacaa cccctgactt tcactcacga agtgaaacac      2700
     gaaattagaa ctcaggatga aaatcccatt tttactaaaa cctaccgcta tccacaggtt      2760
     cataaggaag aagtaaagcg ccaaattgcc caaatgttaa aatccggaat tattaggccg      2820
     agttattcac cttggtccag cccagtctgg atagttccga aaaaagctga cgcctcagga      2880
     aaaaagaagt ggcgtatggt gatagattat cgaaaactaa acgataaaac tgttgcggat      2940
     aagtacccca tccccaacat ttcggattta ttagataaat taggaaaaaa gcacttattt      3000
     tactacctta gacctagcga acggtttcca tcaaatccaa gtccacccaa aatagtattc      3060
     aaaaaactgc atttagcaca gagaatggac actttgaatt ttttgaggat gccttttgga      3120
     ctccagaacg ccccctcaac ttttcaacgt atgatggact ctgttttagc aggacttcaa      3180
     aactatattt gccttgtgta tcttgatgat ataataatct ttagtagttc ccttcaggaa      3240
     cacataaaaa attgcaggct agtgtttgaa aggttacgaa aatttaatct gaagatacag      3300
     ctagataaaa gcgaattttt gaagcacgaa gtagattatt tgggacacgt cattacaggc      3360
     aaaggcgtaa agcccaatcc cgaaaaaata agggcgattc aagattttcc gatacccaaa      3420
     acgcctactc aaataaaaag cttccttgga cttttgggat actaccgtaa atttattaaa      3480
     gatttttcaa agattacaaa atttcttact gcatgtctaa aaaaggacgc acaaatcccc      3540
     tttgaaaatc ctaaatttat cgaaaagttt caaagatgca gggatctttt gtgtaatgaa      3600
     cccatcctcc aatacccaga tttttcccgt gaatttattc ttacaactga cgcctcaaat      3660
     tttgcactag gagccgtact ttctcaggga aacgtcggca atgatttgcc tatttgctat      3720
     gcctctagga cccttaacga ttgtgaaact cgttactcaa caatcgaaaa agaactttta      3780
     gcgatagttt gggccaccaa agttttcagg ccctacctat ttggaagaaa gttcaaaatt      3840
     cttacagacc accgcccttt gacttggtta ttttccctga aaaatccaga atcgaaatta      3900
     gctcgttggc gcattaaact tgaggaatac gactattctg ttgaatacaa acccggtaaa      3960
     aagaatctga acgccgacgc cctctcacga attgaattgc aatttaacat gatagtccct      4020
     gaatccccag ccttagagga tattttaaat ctagatgagg ctgaagattc attgaataac      4080
     cacgaaattg atgatttaga ctcaattgca gttaatgtgg gagaacttga taccttcacg      4140
     gaaataggag cccctccaaa ttttagaact cacccttcaa gtcaaaccgt tcattctgaa      4200
     gaagaaagtc ctatccaaaa tatcccaatt acggaaagag caattaatta ttctaaaaat      4260
     caaataattt tcaaactaac agaggataaa gtcgccaaaa ttaaaactgt aaaaatgttt      4320
     tccaaaacaa ggaacgaaaa aaccagggta gtatttgaat taaatgaaga aggataccga      4380
     gctgaactga aatcactttt aaatgaaaag atcaatccga aattgaaata taaactctat      4440
     tttgacccag attcgctcta cccaaaaatc actaaaataa ttcaggacca ctttcaaaat      4500
     ttgcaactag aaaaatccac aaaattactt gaagacgtag aagagcctga acggcagatg      4560
     caaataattt tagattatca cgagggtaaa aataaccatc gagggatcat agaaaccgaa      4620
     gcacacctac agaggaaata ttattggccc aacatgagga actcgatcca aacctttatt      4680
     aataattgtg aaacctgtaa tctcgctaag tacgatagaa atccctatca cttagagttt      4740
     gaaaaaacac ccactccctc gaaaccgttt gagatagtgc acatggattt gttgacaata      4800
     gaaaatcaca attttttgac actgacagac agcttttcga agtattcgca agcttatctt      4860
     gtagactcaa agcaaggtct agaagtgata gataaatttt tggttttttg taatcatcac      4920
     gggtgtccca aaaaaattgt caccgataaa ggccccgagt tcaataatag cctacttaaa      4980
     gaattttgcc aaactcatga gatacagttc cacgtcacta gctcagatca tccgcaaagt      5040
     aatgggcttg tagaaaggtt ccactcaacc cttttagaac attgccgcat attccgattg      5100
     ctcccaaaat tcaaaaatga ccccattcaa ttagtagtgc aatatggtct ggcagcctac      5160
     aataattcaa tagtaaattc aacaaaatta acccctcatg aaattattac agggcaccta      5220
     gaaacagaaa aattcttaac aaccagaaat agcccaacta cacaggcgta cgtggaaaaa      5280
     cacaaatctt attgtaaaaa attgtatgat ttgatccaca atcgcctgga acaaaataaa      5340
     gaatcttatc tgagtaaagc aaatcaaaaa aggcaaaaag ctcccaatca agatccattg      5400
     gaagtttttc agcgaaattc ccgcggaaga aagaaaacag gaccaaaatt catacttaga      5460
     ccagttcaac agaaaataga tcctaaaact ttgattgtca aaaatcctca aaaatctgca      5520
     ggtgaaaaat taagattgga tcaaattaaa cgcttacctc ggaacttcgt gtctgttgca      5580
     gatgttccta caacctagca atgcctctag ataagcactt caggaatctg accaatcaaa      5640
     ttggagtcct ccctatcaaa ctaggaaacg ctttgctcga aaattcagat tacactctga      5700
     tccatgtgat tgacgtaaaa cccatcgcaa ggaatcagaa agaactacct tttcacctca      5760
     ctgagttcaa aaaaacgtta caaaaaaaac catccaagtg ttttctcgga attggaacgt      5820
     tcatttttaa aacctcgaaa atatcgagct ttccaatctc gagaagttac agtttttgaa      5880
     tccaactaga gttaagaaat cattgaattt tttgggaaca ggaattaagt tcatttcagg      5940
     aaatttggat gcaaacgatg gtgacaaata cgacactgct attgatagta ttcgaaaagg      6000
     tcaaataata ttggaaaatc aagttaggac ccaatattca cttgccacgc aatcagtgga      6060
     gcaatttaag gaaaacatag ctaaaattca gaaaaatgag gatttgataa aaattcaatt      6120
     agaaactttt aatgctttca tttggaacca aacttcgtca acggcaatta aaattcaagc      6180
     agaggaaact cttagtgaat ttgcattaga ttttctcact atatccggaa tgatttcgga      6240
     actcgaaaat tcagtagctt tctgttatgc caacgtattg caccctagca tcataaaatc      6300
     agatgaccta atctctgaat taaggaaagt ccaaaccaaa acaaatgtca cctttgcagt      6360
     tccaataaat cgtgaaaata tattaaattt agaaaagtca gtcaaagtcc actgccaaag      6420
     gcaaggatcg ttgttgtatt atattttgtc aatacctctt aatgagaaaa tagcttatga      6480
     atatgttaga ttggtcccag tccctgtgtt tgtaagatca gaatatatga taagtcgccc      6540
     agtccggcaa tttattatca gaaaacgggc aacaatgttt agctcaatca ccccttgcat      6600
     cttcctcaag gatcaacttt atcaatgtga actcggaaac ttctctccgg ccaatcaatg      6660
     tgaagaagaa atattcgacg gtaaatcgga cgcttgtcct catacgatga ttgattcacc      6720
     cacaacgtat gtgaatttga ttccagaaac tcaaagcttc ttaggattct taccccagca      6780
     aagaacgata gaaatcattt gccccacttt tcaagagcaa ataaaaatct caggttctta      6840
     tctaagacag ccatttgact gtaatataac aatagaaaat cagactcttc aagtctcaac      6900
     tagcaagaaa atgtatgccc caatattcat cccaaatgtt gtaaatacgg aaactttcaa      6960
     aattcctcag aaaaatattg atttagaaaa attagaattc aaaatagatt caacaaaatt      7020
     tctcccgcca tatcttgata cactgtattc cgatatacca actcattatc tttggacttc      7080
     ggtgggtagc cttttcactg tgagtatcat tttaattgtg tattgtcttt ttcgcaagtt      7140
     cagcaagggt ttcaaaaata tgaaaataaa cgaagtggtg cccaaaattt tgtatgcacc      7200
     tagaaattta gagtcatgtc tcatacaggc ttctgtccct gttgtcaacg agccgaaacc      7260
     taatgcaact cccactctag atgaaaaatg gtactaccca ggaagttttc ctgttcgaac      7320
     cgatttttca aagtaggacg ggagg                                            7345
//
ID   Gypsy-36_TrVa-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-36_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-289
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 340-340 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 289 BP; 84 A; 64 C; 46 G; 95 T; 0 other;
     tgttatatca aattcatatc acctatcgat ataggacgcc acggctactc gcgggagatc        60
     ccggaattcc agacctcccg tgagttaatt aaaacacaga agcacgagcc tggcacgagc       120
     tcgcaaatta tctcactgtt acttttctct tgacatcgcg tctcagagca ttgtccgctc       180
     agcgaattaa tcctgattgt attttgtctt ttaaattttt tgtcaattgt gaataaataa       240
     ctcattttat tttaacctga aaataatcag agttctattt tacaaaact                   289
//
ID   Gypsy-370_AA-I repbase;    DNA;    INV; 4818 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-370_;
KW   Gypsy-370_AA-I; Gypsy-370_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4818
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4818
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 193-193 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4818 BP; 1414 A; 978 C; 1219 G; 1203 T; 4 other;
     aattggcgac aggattggat ttttgccgag ttttgtgcgt caaattgttt ttcgatagca        60
     aaggaatagt tacggtaagt tgtaatacca ataaaaacga tctgtaaaag aaaatctgaa       120
     ctaaacatgt tcagcgccga agcgtttcag tagtgaaaaa agctcacacc atagttattt       180
     tacaggtgtg tgtgaggcct gcgtctagaa agcagagaaa aagctcgagg agaaaaaact       240
     cactagttgc gagtgagttg cgactaggcc tgtgtttggt gaacagaaga ggtcacgcaa       300
     ttaaagctct gtgtcttgta aacagaagag tccgcgtcac gatagcggtg aaaaaagaag       360
     cgattggcgg tttcggataa tccacccgtt tagaatcggc tctgtgtcaa gagaacagaa       420
     ttgtgatctg aggagatcat cgagtttatt tgcgctgcgt ctggtaagca gaagaaaaaa       480
     gacagtaaaa tctgttgtat ggtgtgtact aacagaacta tgttttaggt gagacaattc       540
     gtgctagtga gtgttgagta aacacgcacc cacagaggag aaactttcgt taacgaagcg       600
     atggatgaaa acagattatt tgctaagctg cccccgtttt ctatcgtggg agttcccttg       660
     acagaccgca ggaatagatg gacaacatgg aagcgagggt ttgaaatttg cttgcgggca       720
     gcaaaaatgg aagacgggac ggaaaaaaag gacatgctct tggcgtgcgg ttcatttgag       780
     ctccaagata tattctttag tatacctggt gcagacgtga ctgccgacgc ggaacaagga       840
     attgatccct acgaggtggc gatgcaaagg ctggacaact attttgcccc ccaacgccat       900
     gaagcccatg aacgttttct cttttgggcc atgacaccgg agccggaaga gacactggaa       960
     aaatttttga tgcgggctca agcgcatgga tccaaatgca attttggtaa atcagcatca      1020
     gagagctccg gtatcgcgat tgtcgacaaa atgctccaat tcgtgcccag ccaactccga      1080
     gcaaagttgc tccaggaaaa agatcttaca cttgaggagg tgatcaagca agtaaatgcg      1140
     tttgaaacat cacgtgtagc caacgatcaa atgagtggaa ggactgtccc gttgcaagca      1200
     ggtcgaccta cggataatgt tcaatacgtt gcggcatctt gcagattctg cgcccgatcg      1260
     cacggacagc agccttgccc agctcgggat aagacatgtg cgaagtgtgg aaagcgaggc      1320
     catttcgccg tggcatgtta ttcttccccg gtttatccat caactagcaa accgatgcat      1380
     agcagcaaac acaacaaacc ttccttcaaa cgaccatatg atcaaacgtt tcactcgact      1440
     tcgacttccg ttccaaagaa gaaagcaatg cagttcgctc ggaagataca tgctatcgaa      1500
     gatgatgaag aaaagttcga acttgttgag atggtttctt ctggtaacga ttcggatgag      1560
     ctgatttggg cgaaagtggg cggtgtatta attgagatgc agattgactc gggggttcaa      1620
     tctaacatta tcgacgatcg tacgtgggaa acaatgaaca ggaacggagt gtgcgttatt      1680
     ggagagattc gtaaatctga tcgaaggtat gaattaaatg cagctggctg aaaaaatggt      1740
     tttaagtcag tttcggtgtt ttcttcttag gttcaaagct tacgctcaag cagattgctt      1800
     gaaagtaatc gctatgtttg atgcagaaat aaccattctg gatggggaca aacagctgaa      1860
     ggctgtgtca cggttttatg ttgtggaaaa cggtcctcag cctctccttg gaaaggaaac      1920
     agcgaagcag ctaggggtgt tgctggtcgg attgcctagc cagagagaaa cggttcatca      1980
     tatggaagcc tgccgatctt ttccttctat tcgaggagtg aaaattcgta ttcctgtaga      2040
     taagtcggtg caaccagttg cccaacgtct ccgacgttta ccgttgccaa tgttagacaa      2100
     ggttgatgag aagctgaatg aattgctttc taaggatatc gtcgagaagg tctatgaacc      2160
     aagtagctgg gtgtctccga tggtcatagt agtcaaagac agcggagata ttcgtctctg      2220
     cattgacatg cgacagctta acagggcaat acttcgtgaa acacatccgt tgcccacgat      2280
     cgaggagatt cgttggagac tgaatggggc gaagtttttc tctcgtcttg atataaaaga      2340
     cgcttttcat caacttctgc ttgacgatga gagcaaacat ctaacaactt tcataaccca      2400
     ccgtggactt ttccggtata agcgcttagt ttttggcatt tcttgcgcgc cggaaatgtt      2460
     ccagaaaatc ctcgagcaga ttttggcgga ttgtgaaaac acggtgaact ttatcgacga      2520
     tattgtagtg acgggtagtt ccgaagtaga gcatgatgca gctctggaga aagttatgaa      2580
     gaagcttaat gaacatgggg tccttttaaa tcaatcgaag tgtgctttca agctcactga      2640
     aattgaattc gtcggccagc gattcaatca aaatggaatg ataccgtctc agagtaaaat      2700
     tgaagccata caaagttttc gtccaccaaa aagcagtgag gaagtccgca gtttcttggg      2760
     acttgttaac tacgttgggt cctttatccc aaacttagca acaatctcgt ttccacttcg      2820
     tgaactgacc aagaataatt ctacgtttgt ctgggaaaat gatcagcaac aagcttttga      2880
     tgaactcatc cgtctggttg gaaatattga gacgcttgcc cacttcgatc cgcascttaa      2940
     gactagagtt gtagcggatg cgtctccagt gggactagga gcggttcttc tccagttcca      3000
     tggagatctt cccaaggttg tagcatatgc cagtaaaagc ttaacmagca cggagtgtag      3060
     gtacgcgcaa acggaaaagg aggctctagc gcttgtttgg gccgtggaac gatttcagat      3120
     ttatcttttc gggatacgtt tcgaacttga aaccgaccat aaaccmctcg aatcgatctt      3180
     cactccaact tcttctccat gtttgcggat tgagcgatgg gtccttcgac tccaagcatt      3240
     tagttatgac atcgtatatc ggaaagggaa atcgaatatc gcagattcgc tatcccgtct      3300
     ttcccgtccc gcagagattg aagaattcga tccggattcc gacgtctaca taagaaacgt      3360
     gatggaacat acggctgtcg acgttcatga agttgaaatc gcctctggcg atgatccaga      3420
     actgcaagca ttgaaagaat gtttggataa gggcatttgg aactatgcaa acgatcaatt      3480
     gaagccttat cacgcgttcc ggttggaact ggggacagtt ggagatatgg tcgttcgagg      3540
     tagcaagcta gttataccta gaagccttcg tcaaagacta cttgaattag gtcatgaagg      3600
     gcaccccggg cgaacaaaaa tgcagcaacg tctaagatgt acctgttggt ggccaggaat      3660
     ggacgaagct attgttcgga tggtggagag atgcacgggt tgtcgcttag tgagtcagcc      3720
     agatcgacca gagcctatga tgaggagggc tctgccagag aagccgtggg tggacgtagc      3780
     gatcgacttc cttgggccac ttccgtcggg agattattta ctggtgatta tcgactattt      3840
     tagccgatat aaggaagtcg aaatactaaa gaagatcacg gcaaatgaga cagctgagcg      3900
     gttggaaaga atatttgtaa ggcttgggta tccgagaaca attactctcg acaacggaag      3960
     gcaatttgtg agtacctatt ttgaccagta ctgtaagcag cgaggaataa cacttaataa      4020
     aacgactcca tactggccgc aagaaaacgg cctcgtggag cgccaaaacc gatcgctagt      4080
     gaaaaggctt aaaataagcc aagccctaaa tagcgattgg aaggctgatt taggtgctta      4140
     tctctctatg tactacgcta cgccccacac cacgacggga aaaactccta gcgaattgat      4200
     gtttggacga attatacgga ctaaattacc atcgttgcaa gattttacca ctgacgcaac      4260
     acagaccttt tcagactaca gggataaaga catgcagatg aaggagaaag gaagagtcgc      4320
     ggaagatcac cgccgaaagg caaagcaatc ggagattgtt gctggagaca aggtattgat      4380
     gaagaataac cttcccggta acaagcttac tgcgacgttc agccccacca ttatgaccgt      4440
     tgttgataaa caaggcccac gtgtaacggt gcaggatgag ttatctggga agacctacga      4500
     cagaaattct agccacctga aaaggatcag taccaatgcg aacgaaacag tctccaacga      4560
     gactacaatg aacagggaga ctcgcgagat cgagcakgaa gaaggagatt ctaatgaagc      4620
     ggaaatcgag caggatagcc tacaagttgc ctcaccgaaa catagcgaac acgatgcagc      4680
     aggacgcaat cgaccgcaac gtgttattaa acggccaagt cggtttttgt agtgtataac      4740
     ttttggttgt gtgaattgat tttatttgaa tgtcacatta ttttaaccgt gaaatcttgt      4800
     atctaaaaca aggggaga                                                    4818
//
ID   Gypsy-370_AA-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-370_;
KW   Gypsy-370_AA-I; Gypsy-370_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-119
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-119
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 229-229 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 119 BP; 36 A; 17 C; 29 G; 37 T; 0 other;
     tgtggtgata cgtctgtaac taatctatgg gaaagctcta tgagcagaga agatcataat        60
     aaatacagtg tgcaaacaga gtggctgtta gttttatttg gcgtgcttat tgtaccaca        119
//
ID   Gypsy-371_AA-I repbase;    DNA;    INV; 6338 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-371_;
KW   Gypsy-371_AA-I; Gypsy-371_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6338
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6338
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6338 BP; 1985 A; 1478 C; 1305 G; 1570 T; 0 other;
     ttggcgccca ttctgaaaaa cccacaccta tttcagatct gtcaattcac gcgcgcggtt        60
     tttcgctata aagagtgagt caagtgagtc ttaagtgtag tgcagtggta atatggagta       120
     caaacattta tcggacaccg aactcgatta tgaattagag ttacggcaag tagacaaccc       180
     aaaagagctt cataggaaga aaaaaatcga taggatgcga gaactacttc aaatggaaag       240
     aacaacgatg gaagcaccat catcagcgcg tcatttcatc tcagatcaag acaacatcaa       300
     ctactgtcaa cgcaaaataa atcgcttact aggaaaactc aacaaggcat tcgcggagga       360
     ggacctgaac gaagtcatat catgccgatc aaaatatcta cactatcgga tgagagtttc       420
     tctaatcatc gatcctttgt atattccata cgtgcgaatg gcggagaaga acattgaaga       480
     cgctcttgcg cggatcgagc aattcttgca aaaccaaacg aaagtgcctc cacccctccc       540
     accggaattg gaagacattc tacccgcgga agaagacatc cttaagcaac ttcgtgacgt       600
     caacctacaa tcgagcctga gagtgaggga tagatcagtg ctagcatcac ctactcgtac       660
     agaagacaac aaccagaggt taacaaacac cgtttcagga acacttcata agcagcagca       720
     gtatcaagaa tcggagcaat acaatcagga gtgtcaagaa ctacaacagc agcaaatgca       780
     tgagcagttt caagaacggc agcaacaaca acagcagcag gtggaacatc aacatcagga       840
     gattcaacaa ctgcatcacc gacaggcata tgagcagcaa cgtcatcagc gacaacatcg       900
     agcgcaacgt caacagcagc aatttcctat gccagccccg cgatctggtc atgatgtgtc       960
     caacgctgct ggttctgacg tgagagacga aatcatcaga tacctgctga ataaccggga      1020
     tcaaggcact tctagtcatg ctacttccaa cagatatcgt ttcacacatc caattcacaa      1080
     gtggcctttt tcgtacgctg gtagctcaaa catattggag ctggctacgt ttctgaacca      1140
     agtaaaaacg tatgccgaca cggaggatgt agaagacaat tctttgatcc gcggtataaa      1200
     acatcttctg cgaggtcgtg ccttggaatg gtatactcgt aattatacct tgttcaacac      1260
     gtgggatgat tttaagtggc gtatcaaatc agaattcctc ccatctaact attcccaatc      1320
     catcaaaaga gacctttact ggagattcca aactgtagag gaacccttct cgaggtatta      1380
     tcaagatata tttgcgttat tggaagtggt agaaccaccg atcacgcagc aagatcagtt      1440
     tttcattctt aagtcgaatc tgaatcccga gttcgctgtg gtcgcctcag catcacgggc      1500
     ttccactgtt caggacttag ttgcagtatg taaagactac gacaatgtca gaagctgcac      1560
     aaacaaagga aaatctgttc atcttcagcg tggattaccg gctcactcta atactccagc      1620
     tcctgcagga aatcgattct ttagatcgga tcctccattg aacaattctt ggaatcgatc      1680
     gttaccggcc cgtgatcagg tgaatatgat agacgaagaa tctctagatg tatcagcacc      1740
     atatagtgag atgtcggaac aacataactg cccagccctg ccagcaatca aagctgtaac      1800
     tacagacgag catcgcatgg taaatgatca ggaaagacaa gaggaagtca atctggttcg      1860
     tggatcggct caatggccgt cgagaccacc catcccatca attcaaaaca gacaagaaca      1920
     gaaaataaag atcgcttgtt ggcaatgtga gcatcttgga catgttttta cagcatgtcc      1980
     aaatccaaaa acattcctat tttgctaccg ctgtggcaaa aagggattta cttcccggga      2040
     ttgcgttgat tgcatagcga gaatgaccca agctgtccca gaactacatc ctcgtctaca      2100
     acagggaaac ggaggcgcgg ggtttcgaca atgaagggtt cgaattctcc gtccacacaa      2160
     aatatccctt ccttagatga gactgtctat tttcgacaca tatcatctgt agtttttgac      2220
     ctttctagcg gcgacaatcg accctacgct gacgttcgca ttttgggaat gaaacacaga      2280
     gcattactgg atagtggtgc cacatgttgt ctaatgggta aaaatttgct gcctatcgtg      2340
     tcccaattca acctatccaa gtaccctgtg ttaggaacta ttcgaacagc tgacaacaca      2400
     gtccacgcag tttccttcta tgcacacgtt ccggtagaat acaataacag aaaggaaatc      2460
     ttaccaatca tctgcgtaga cagcctgcca gatacgttca ttttgggcat gaacttctgg      2520
     aaccttttcg gagtcaaaat ccaggtttgt ggcttggaag ttaccgcaga gacggatgta      2580
     gcggccataa aatcactttc caaggaacaa caacaagctc ttctggaagc aatcgaagaa      2640
     tttccatcct caaaatctaa gggtcagcta ggtcgcacga acgtgtactg tcataaaatt      2700
     gacacaggaa ctgccagtcc cttcaaaatg aaatattatc ccacttctaa atttcttttg      2760
     gacgacatca ataaagaggt ggaccgaatg ttggctatgg atgtcatcga agaggccatt      2820
     tgctgtccct ggaataatcc aattgtagcg gtgaagaaga aggatgggtc aatgcgcctt      2880
     tgtctcgacg ccaggaaatt gaacagcgtc atcatccaag aagcgtatcc aattcctcac      2940
     attgccgcaa ttatgaacaa tttaagtgga tctcgatatc tttcctcaat agacctggaa      3000
     tctgcctttt ggcaaatacc tctggacgat gaatcaaggc caaagacggc attcacaata      3060
     cctcaaagag gtcattatca attcaaagtt gtgcccttcg gcttgtctac agccagtcaa      3120
     gcgctatctc gcataatgaa tcacattttt atagatctag aacccaaggt attcgtttat      3180
     ctcgacgact tggtaatagc ctctgacagt ttcgaggaac atttgatgtt actaaaggaa      3240
     gttgctagaa ggctctgcaa cgccggtctg acaatcaaca cggataagtc aatcttctgt      3300
     cgtcgcagta taaaatacct tggctacatt ctcgatgagc gtggctggaa cgtggacagc      3360
     gataagacag cagttatcag caattttcct acgccaaagt ctaagaaaga cctgcaacga      3420
     tttttgggaa tgtgcggctg gtacaggcgc ttcattaaag atttttctaa aatcgccgca      3480
     cccttaacaa acctcactgg atcgaaggtt aaatttcagt ggaacgaagc ctgtgaaatc      3540
     gcattcagcg ccttaaaaca agctctctgc tctgcaccag ttctttgtac tccggattac      3600
     acgaaaccat tttctgtcgc atgcgatgca agcgacattg ccattggtgc tgtgcttatg      3660
     caggaaacag acggggcaga cagagttata gcctattttt cccaaaaatt gtctccatca      3720
     gagcaaaagt actccgtcac cgagagagag tgcttagcgg tgattcgcgc agtggaaaat      3780
     ttcagaggtt acgttgaggg aagtcgtttc acagtatatt gcgatcattc tagcctgaca      3840
     tacttaaagt cgatgaaaaa tccatcgccg ctaatggcga ggtggattct ccgcttgaac      3900
     gcttttcaaa tggacataaa ataccgtaaa ggcacgatta atgttgtacc tgactgtctt      3960
     agccgcattg aagacgtcaa cactgtatcg ctggatccct ctgttgtcaa cgacccttgg      4020
     ttcagcgaac tattgcaaga tgtacaaaac gatccagaca agtttgcgga cttcaaaata      4080
     gcaaacggga aactttataa aaattgtctc gcaaaaaacg aactaggaat acgagtccat      4140
     agatggaagg aagtgattcc ggaacacctt aggtctgaaa tcatcaggcg gtatcatgac      4200
     acgccgactg cagcgcatct tgggtatgaa agaactctgc acaaaatcca actcgacttc      4260
     tactggccga aaatgtcgat tgacgttacc aagcatattc gtgcatgtaa catttgcaaa      4320
     ggcagcaaag ctccaaacac tgtcctaacg ccgacaatgg gaggcgtaaa acctgcaaac      4380
     catccgtggg aacttatttc aatcgactgg gttggcccct taactaggtc gaaaaatggc      4440
     aatactgttc tcctcgtgat tgtggactgg gtgacaaaat ttgtcgttgc tgaagctttc      4500
     agagaagcaa gtgcaaaaca gatggtatct ttccttgaaa aatacgtatt cttacgtttc      4560
     tccacgccac gaatagtcgt gacggacaat gggacccaat tcacatctca agcattccgt      4620
     tcgctcctac accggtacaa catccaatcc atgaaaactg cgttctacag tcccatgtgc      4680
     aatgcggctg aacgcaccaa caggactttg gtgacgtgca tccggacact cctcgatgat      4740
     gaccagagag attgggatca gaatttgcaa cagataatct gcgcaattaa cacggcgaag      4800
     catgagactc tcggttgcag ccctcatttc gcaaattttg gtagacatca cgttttgttc      4860
     acagaccaat atccacaggc cgatttaaac accacaatcg atccaataaa ggcacaagaa      4920
     aaacgtatca agctggtaca aaatcttcat cagttcatta ttgcaaaaat taaatcagct      4980
     cacgaaaaaa gcaaggcacg atacgatctc cgttcacggg atagaaaaat ctcggtgggt      5040
     gatctagtat ggcgacgatc tttccatcaa tcatctgctg ctgatcatcg tacgaagaag      5100
     ctcggaccaa agttcattcc agcaatcgta cgtgcaacaa ttggacggaa caactatcga      5160
     ttggaagacg tgaagacctc tgcaattggc gtttatcacg ccaaagacat aaagccggac      5220
     taaacgtctg atgagaacca gctatgtcca cagtacccct acgctgtcaa ctaggagcac      5280
     ttttgccaca gaaatacgca actcggattg actgaaggcc ccaaaaaaaa acgttaagtg      5340
     aaacctcgtc atccactgtc ggacaccaca caacgaccat ccaaatatga aggagttcca      5400
     cgatcaactg tatcacaatt ccttcacacg taaaagatgt aacacgatgt accgaacaag      5460
     tgttcttact ttcgacgtag cacgacaaat aagtcgcaat cctcatttct caaatgttca      5520
     agctatataa gaagcactat tttgcaactg attacggact aatgccacca aaaaacgctc      5580
     tgcggacacg gctagaggcc ctaatccata aaacgaaacc tcgccatcca ttatgaacac      5640
     cacatccaag gaaaacctct tcaagaatag acatccttga gaaccacctc gaagcaccac      5700
     aagaagaaac tcctcaacca cctaatgact cactcttagc gcgtcacgct cctcacaatc      5760
     aacactctct cgataatgcg ctctcgaata atgcgctttc gaattccaag acaaaataca      5820
     aaacaaaaat caaggcgata aagttagatg aacagcaaga acataggtga tcgtttatgt      5880
     tactacatgt ttatatgttt tgattgatat gtagattttt gtatatgtat ctaatatctg      5940
     ttctacaaaa ctcccattgt tgtaaagtgc ccgaacgaca tgtaattgac acagatagtg      6000
     atgaacacaa tggcaattag cagtaagaca ttagttgtag acgtagtaaa taagcgtatt      6060
     ttctatagtt gttactatgg gcaaaaatta ccttgcgtat ctgccacaaa gttttagtgg      6120
     aagcaagtag tcttctttgt gtagtatgaa gaattatttt gtagagcacc actcaaacac      6180
     aattcggaat ccaatgaagg actgatctgc tgaattcgtg taccaagtac tagcatattg      6240
     tctaaatcac tatcagggcg aaatcaaatt ttacgaaatt tttgtgaatg tccaccacat      6300
     tccattcaca aaaatttcgt ttggattagc ttggtgtt                              6338
//
ID   Gypsy-371_AA-LTR repbase;    DNA;    INV; 1665 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-371_;
KW   Gypsy-371_AA-I; Gypsy-371_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1665
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1665
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 82-82 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1665 BP; 498 A; 387 C; 378 G; 402 T; 0 other;
     tgttacgttg tggagttatg tcgactaaat attggcctta ttattacgcg acaaacatac        60
     caagccaact ggcaaccctt cgcatcgaat ataaaagcga cgctttgacg aaaacgaagc       120
     aacgcatcac caataagacg ttgtccagcg acgtctacga cgcacaaaag caaattcact       180
     tctcgtacaa tcgtcgtgcc ctccggtttg tagtgtgatc gcgtcatgat aatcacgcga       240
     aaaacgatgt ggtttctctg aagctgatta ccgccgtcct agagcgagaa aggtaaatta       300
     ccagtgtaaa aacacctggt gaactcagtg tacaacctaa tgattttcaa cagaagcaca       360
     cacttcgagg aggcacacgt ttcgaagtca acgagaataa actgcccacc caagcacatt       420
     caacgacgcc attgaccacg ccaacgcaag ccgcacaaaa accccatgcc ataagcatcc       480
     agaaagggcc gtcaaattgg aaattcgtcg tgatttgaag gtaaacttga aaatcttcgt       540
     atcacccacg agaaaataat ttacattatt tctgataaaa ggtgctctga aggaaattaa       600
     gctgctgaca taccacccaa agacacatca aaatcgttcc accactgtgg agaagacccg       660
     tgataacgag aaggctctca ccaagaggta aacgacgctc accacgatcc ttcgtaatgc       720
     tcacggctca taatgaatat gctttcaggg ccttcttcat acacgcttct ttgtgtagca       780
     acactctccc aacgatcgtt agtgccatcg tgaaggtgcg ccacagcagc gagagcactt       840
     caatcacagg acggaacctt aagtggaaat tgaatgtgtt ggaccagtgc gcgcatgtgt       900
     tagtgagaaa ttaccaacag caaatcgttc tctgcgcact cctcgcacag gaacctgcgc       960
     agcggattgc tgtgtcggta ttagtgccga gtcactggca caagaatcat ttcgcatatc      1020
     gtggttgtga atcggatgga agaagtttgc caacgcatgc atatgtgtgt caacataaag      1080
     cgagtattca caacttcggc agtgcatgca atcatcagct cctaggctgt gcaatggtgt      1140
     ttgtgtgggt agcggtgaat caaatgtaaa taatcatcat cgaagtgcgt cgcagactcg      1200
     aattgaatgc gatcgaagtt catcaacaat ccatcgattg gactcgctag taaagcagtc      1260
     gagcgctcaa atggagagcg cgttcagatc ctcgtcgtca tcatttgcgg ttcgtcaagg      1320
     ggcccctgca gcgcatcgag catcaagtgg cagtacatcg gtcgcagcta agtgagccag      1380
     ggtagatgta aggtaggcct agactataag tgaatagaac agatgatgcc atcaatataa      1440
     aatgtcttgg taatgaaccg cctcttattg ttggttcatt cttattggct gcccgagcac      1500
     ctcattaaca aaagtgtgct ttagccgggc gtgaatgaaa aggggaacag gtctcgttca      1560
     cccaatgagt tgagctagcg taattcatga tcttataagc cgattatcat tattatttag      1620
     ttttccgcac ttgtttgaaa ggcaaataga agaaagatcg taata                      1665
//
ID   Gypsy-372_AA-I repbase;    DNA;    INV; 6388 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-372_;
KW   Gypsy-372_AA-I; Gypsy-372_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6388
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6388
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 114-114 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6388 BP; 2035 A; 1492 C; 1358 G; 1503 T; 0 other;
     ttggcgccca gactaaaaaa cccacattcg cgttcggttg tcttcgcgta cgcgtctgtc        60
     aagtgagtga tcagcgattg ggacagtgta gtgagctgtg caagtgcaag tgcatcacaa       120
     tggactggaa tcatcttaca ccggaggaga tagacttcga gcttctttta cgcaacacga       180
     ctggaattcg agggaaggat ctggactgga aaatttcaag attgatacag cttatcgacc       240
     gagagagaaa tgggacgccg gcacctagtt gttcatctca cgttgcatca gacatggaca       300
     gcatatacca ctgccaaaca acactttctc caatctttct cgccttgaac gcagccttca       360
     agcaaggaaa caaaatccag gtggcatcat tgaggtcaag attgctgcat tacaagttta       420
     ggctttcgct tatatcggac tctatgatct tagaaaatgc aaaaaaatct gcagcaaaag       480
     tttgcaacgc tcttcaacaa atcgaggaat tcctgcagga gaataccaca ggcgttcacg       540
     atggaaatga agatcctgaa gaccttccta gtgacccgga aacactgaag cggttgaaga       600
     ttgctcagct ccaatcaagc atcgacgaag cagggaagca gcaaaaacta ttagaacgag       660
     aacttcaaca agaactacaa aatgagaaca ttcagcaagg ctcttcaaat caggataaaa       720
     ggattctcga tacacatcaa caacaacagt tcctcgatca aaaacaacaa cagcagcagt       780
     tcataccgca gcaatctctt caggatcctg ccgaactccg tcaacctcca aaccatcaag       840
     agcaacgtct gcagcatgaa caacagcaag gatttcagca agagcagagc cttcatctac       900
     ttttgaatca gatgcaattg cagcagcaac agttggagca gcaacttcag caggagcaac       960
     acagacgaca gcaattagaa tggcagttac aacaccagca gcaacagcaa agcttggctg      1020
     cggtgcagca gcaagcgaac cccgccccaa actacaccta tggatccata tctggatact      1080
     ggggtcctca gatacagcga gaatccggga tggctcaaga ttcccgcaga aacattccaa      1140
     caccaccggc tggcgtcgta tataggccta atacaccgag atcccttcaa caacctattt      1200
     ccaatcggtt tcagcaacca gttcacaaat ggccattcga atacgctgga gaaaacaaca      1260
     tcgtgaagtt aggagaattt ttgaatcaag tgaataccta tgccgtcacg gaaggtatgg      1320
     atgaccaatc actacttcgc tcaatcaagc atcttctgaa aggccgtgct cttcagtggt      1380
     acacacgctc gtacctcgat ctaacgacat gggagatctt caaatcggag atcaaacagg      1440
     agttcttgcc tccaaactat tcagagatag tcaaacaaga tttgtattta cgattccaag      1500
     gaccgaatga gccgttcaca aatttttata gagatttggt ggcggcattc gaaatcgtag      1560
     aaccggcaat ttcagaagct gagaaactgt tcattctgaa atcacatttg aattcggatt      1620
     tttcgccgat cgctgcagca tcgcgatcca cctgtgtcag agatctcgtc acagtatgca      1680
     aggattttga ggtgtcacgg tcctactcta ttcgaggacg tgctccaaca actgcacgag      1740
     cgttagcgtc tcgccctgaa cagaccatat tccagcggcc ggtcttaaac agaatggaga      1800
     gtgtaaatcg gcccctgcaa aatagacaat ttggagccgc tcaagtcaat atgatggaac      1860
     tgaatcaaga cgtagaggaa gaaccggatt cagcaaatat catggaacga gaagccttcc      1920
     agctagattt ggctttccga aacgaagcag cgagaaactc ggtggaagaa gtgagcgctc      1980
     tgcgagcgac caactggaga gggcgatcgt ctgaaaatgt acctcaagca tcggctggag      2040
     aaatcagtag cagagattta gcaacagcaa tcgtctgctg gcaatgcgag agtcctggtc      2100
     atacctactt aagatgccct aacccgaaac gttttctttt ctgctacagc tgcggcaaga      2160
     agggttgcac tacgcgtaac tgcgatgcct gtatcttacg ttggcgacaa ttagaagcgc      2220
     acaatgcctc tcaggttccg ggaaaccgga attgggagaa cccgcagtaa agggggtggg      2280
     atctcccgaa aaggctgacg ttcccttact caacaacatt cccgctttca agaaagcgga      2340
     atccataatc ataaatgcag acaacaaaga taaccgtcct tatgcctcaa tatcaattct      2400
     aggacgaaag ctgcgtggac tacttgacag tggcgcaaca tgcagtctca taggaggttc      2460
     cctatccaaa attgctgacg aacttggcct gagtaagttt ccggttaaag gagaagtaaa      2520
     aacagctgac aattctccgc atacagtctc attctattca catgtgccga tcgcttacaa      2580
     taacaagaac gtaacattgc ccatgctttt catcgaatca atgccgccca tattgatttt      2640
     gggcatggat ttctgggata aattcggggt aaaacctgtc atctgtggaa tcacggagaa      2700
     catgacatcg gaatgctcag tcattgggac actgacgaca agacaacaac aagatctcca      2760
     gcaagcaatt cgaacatttc caacatcagg aaatcagggt cgattaggta ggaccaacat      2820
     atattgccac aaaatagata ctgggaaggc atctcctttc aagcaaaaat attacccaat      2880
     gtccaaattc gtattagatg acctaaataa agaagtggac agaatgctat cactaggggt      2940
     aatagaagaa gcagtttgct gtccctggaa taacgcaacg gtggctgtga agaaaaaaga      3000
     tggctctatg cggctgtgcc tggatgcccg gaaattgaat tctgttctgg ttcaggaagc      3060
     gtaccctatt ccccaaatag catccatcgt gaacaatctg agtggatcca aatatctttc      3120
     gtcaattgat ttagaatcag cgttttggca gataccactt gaagaggaat cgaaacagaa      3180
     aactgctttc actattcccc agcgcgggca ctaccagttc acagtggtgc ccttcggtct      3240
     ctcaacagct agtcaagcac tttcacgggt catgaatcat ttattcatag atctcgaacc      3300
     aaaagttttt gtctacttag acgacctcgt gctggccacc aattcttttg aagaacatct      3360
     agagctgcta catgaaatcg cacgcaggtt gaaagctgct ggtttgacca taaatgcgga      3420
     aaaatcagta ttctgtcgga aaagcttgaa atacctgggg tacgtccttg atgaaactgg      3480
     ctggcatgtg gatgaagaaa aggtagaggc aatcagcaaa tttcctacgc caaccagtaa      3540
     aaaggaaatt caacgtttca tcggcatgtg tggttggtac cggagattca ttaaggactt      3600
     ctcgaagacg gctgctccac ttacagaatt gaccaagaca aagatcaagt ttaagtggac      3660
     agatgattgc gagaaagctt ttcaaaccct caaatctcac ctaacatcgg ctccaatact      3720
     cgcaacacca gattacagca agccttttgc aattgcttgc gatgcatctg atgtcgccat      3780
     aggaggagta cttacgcagg aaactgaagg ccaagagaag gtgatatgct acttctcgca      3840
     aaaattatca tcctccgaga gaaaatactc ggtgacgcaa cgtgagtgtc ttgcagtaat      3900
     tcgttccatc gaaaagtttc gaggatacgt cgaaggtacg cattttacag tctactgcga      3960
     ccattcaagt ctcacttacc ttaagacgat gaagaaccct acttcgcttt tagctagatg      4020
     gattttacga atgaatgcgt actctttcga tattaaatac cgtaaaggca gtgccaacat      4080
     agtgccagat tgccttagtc gagtagaaat cgtgaatgca gtctctacat cagccgatcc      4140
     atggtttgac aaattagtca aagaagttca aactaataaa gacaaattcc ctgactttag      4200
     gatcataggt gaacatctgt acaaaaactg catcattaag gacgaggtgg gaagcaaagc      4260
     tcatcgctgg aaaaaagtcg ttccaactag tcaacgtctt gacttaatac accgatttca      4320
     tgatgttcca acggcagctc atctgggagg cgatcgcaca gtcaaacgta tccagcgaga      4380
     ttattattgg ccccaaatgg ccaacgatat atggaaatat gtacaatctt gcgaagtttg      4440
     caaagctatt aaagcaccca acacaactct aactcctaat ctaggcaacc caaaacctgc      4500
     acaattacca tgggagctga tttcaatcga ctggattgga ccacttacca gatccacgaa      4560
     aggaaatact gtgcttttgg tgatagtgga ctggataaca aaattcgtga taaccgaacc      4620
     gtttcgcacg gccaatgctc aaaaaatgac cacgttcctg gaacaatacg tctttctcag      4680
     gttttcaaca ccgaggatca ttgtttctga ctctggttca caattcctat cacaggtatt      4740
     ccagagcctg ctcaaacgct acaatgtaat ccacatgagg acggccttct atacacctat      4800
     gtgcaatgcc gccgaaagaa ccaaccggac attgattact tgtgtaagag ccctgcttga      4860
     ggaagaccaa agggactggg atgtgcacat tcagcaagta gtttgtgcga taaacacagc      4920
     caagcacgaa accctcggat gcagtcccta tttttgcaac tttggtaggg accacatatt      4980
     atacaccgac caatacccgt tagcaaaact taattcatca gacgatccaa ctgccacaca      5040
     gaaagcacga atccggtgta tacagaacat tcaacacttc gtgttaacga aaatcaagac      5100
     cgcccatgac acaagcaaac aaaggtacga tttacgagca cgaaacagaa gcttcgaggt      5160
     tggagagata gtatggagaa gatccttcga attgtcaaat gcagctgaac atcggacgaa      5220
     aaaacttggg gcaaaattca tcccctgtat agtacgtcaa gttcaaggat gcaacaatta      5280
     cctgttggaa gacatcagaa ccgcaaaatc tggtgtttac cattcgaagg acatcaaatc      5340
     tgactaatcg tcataggcac cagctatgaa aatgactctc catagtctga ccaagagcga      5400
     ctacgccaac gaactcgttt gctgacgaat ttgaaggccc tacaacatta cagaaacctc      5460
     gtcgtcagca agcaacaaaa ccataaccac ccaaaacgtt cagctatgtc cacagcactt      5520
     cactgtcaac aaggagcaac atctgccagg aaaacatcga taccggatag ctaccagtct      5580
     acgactttgc cattatccgg agagattaac caacactgcc cgactacgag tatttcgcca      5640
     ccagaacatg attgctactg acgagaaggc gaaacgtctc agcaggcatc cttggcacag      5700
     caagtagtct tgagcatctc aactacacgg cattcagact gaggttgcag gacggaagcc      5760
     tacactccaa tgcacgcttt cgatcccata tcaacaatag taatcgctca ctccgggaaa      5820
     aaagatcact cactaaagtc tggagtatta tgaacgccaa aattaacgct tattgctaac      5880
     tcaaacttct catgactcag atatgtatat atatataata tatatatcct atgctgttta      5940
     gtaatgaaat ataatgcagc tcacacaata atcccaatat aatttgaaat gtattttctt      6000
     ggcaaaattt ctggcgccca acaactaaat cgtaactcag gtgttggcga cgcaattggc      6060
     cctaatcata gtgtagaact agaagtagca ttagagatat tccgcagcgc agctgcagcg      6120
     gtgaagaaat tagtttcttg aattgatctg gcacgaaacg tgtaaccaag aacaagtata      6180
     ccgttagcta ataagatgtg tagtgaagta ccgtagatat ataagaacta tacgcaatac      6240
     tcgatgtaca actaaaagat gatctgttcg agattgttag atagcataaa aatcaattag      6300
     cctctccaag acctgatcat cagcagatag acgaaatttt tgcgaatgca gcattcgcaa      6360
     aaatttcgta accctttgtg tgatgttg                                         6388
//
ID   Gypsy-372_AA-LTR repbase;    DNA;    INV; 1529 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-372_;
KW   Gypsy-372_AA-I; Gypsy-372_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1529
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1529
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 127-127 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1529 BP; 463 A; 357 C; 337 G; 372 T; 0 other;
     tgttacaatt tgaaattatg ccgacaaaat ggaataaaaa tttccttgag tgaaaccgaa        60
     taaattgcag ccaccatgac cttaacgccg ttaaattgtc taacacacgc aaagacattc       120
     ctcaatatcg cacatagagt gtcgcaccga tacgaggccc agaatccagc actcgaatac       180
     aatgagctat tgtagatcga acaatactcg agtgtggatg gccaagtgaa agccccgaaa       240
     accactaaaa agtgcatgcc tttaatactg tgcggtgaaa cagtgcttga ttaatgcaaa       300
     gtgcccaaaa aaccctacaa tcaaataggt aaaatgaggt gttcaattcc aaaaatcaga       360
     cactaatttt gattccacca tgcaggtacc agacttgaaa acgcacaagt gttcacagcc       420
     cacgctaatt gaatcccatt ggcgggctct aaccaggtaa aaaattgcct aaatttgggt       480
     acgatagtgc aataacccat gcatttcact taaaggatcg gttgattgca tcaaaggcgt       540
     gccacttgca tgattcacgg gacctaagct aaccagcacg acaggtaaat tcatgcacta       600
     ttcaataaac gagcctccat gaatccttat gcatctgcat catgcccaca gttcattttc       660
     gcaacacgtg gaatgggtta gtgaacgaat ttcctaatcg ttcggaacac aaggccttcg       720
     caaggtaaca tatgaacctt gggatccgct gggagtggac taacaggcct accctcaata       780
     gagggccttt tacttccagc ttcaagttcc aaaaaccgat ccggcttcgc cggagatcac       840
     tctaaaaggg cctagcattc cagcgcaaag atctacaagc agaatcgtca ttcgaggggt       900
     ggaccttctc gttattgcat cccagctacc agtgcatcag ggcagtgaca tcggcatagt       960
     gcgacaagat cacctgcatc ggtgcaacac gtcgccttgt gccatgcgac aaggaagcct      1020
     gcgacatcaa gggctgcgtg acatctttgg cctgcaacga cactggatgc aagtgatgcg      1080
     tcagtgttag gaggtgacac gacattcaac agtgcatcgg atgttgcgga caagcgcagt      1140
     gaatcgtatg gcagacatcg gcagtagcca cagtgagtgc agcatacggg gcccccaccg      1200
     aagaagataa tcttgtgaga ggatgtcaat gtatgtattc catttggtgg ataggataat      1260
     aggatactaa gatgagtcat tatatcaaaa ctaatagctt aactagtgga gtcatgatgt      1320
     tttcttatta ttgagtctgt tggcttatag tttaacagcc acaagtagct agccggctac      1380
     aaaagtttga gttgagagga gtgaggccac tcgatagata gctttccact ttcgttggct      1440
     ccacctcatc cttgtgagca ttcccagcaa tttatagcgt ttttcgatta cccaagacta      1500
     attcccaccc caaaaggaat tttgtcaca                                        1529
//
ID   Gypsy-373_AA-I repbase;    DNA;    INV; 5100 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-373_;
KW   Gypsy-373_AA-I; Gypsy-373_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5100
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5100
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 115-115 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5100 BP; 1463 A; 1032 C; 1295 G; 1310 T; 0 other;
     atggcgaacc tgccagcgtt ttctattttc ttaaattaat tagtggatac gtgagaacaa        60
     acgggagatt gtgattacag tggaacaaag aatagatccg aactgtggtg tttttttttt       120
     tttttgaaat ttacgcgtca taacgcatgt gctgaaccgc cattttttta tttagtgtga       180
     aacgcatggc gattttcaat ttgtgattgt ttgtttggta gattaaagag taaacgtgca       240
     atcgaagctt caagtaaaga agtgatttgt ttcctcctat tgaaacgtgc ttgtgttgtg       300
     aaatttaccg tcggctttag tgtgctgtga cagccattgc atagagagaa ccgcgttgcg       360
     acaaccgctc agtgagctgc gacagccact gcaacattaa acgtgctggg tcaaccgttt       420
     ggcatgtgcc gcgaaaaaag cgtggtgcga caaccgcttc ggtgtgctgt gtcagccact       480
     aggtgaaata gcgggttgtg tcaaccgctt gtgtgctaag atagccacta taattttaac       540
     gagttgtgcc aaccgttcca gtgtgctgag tcagccatta taatgaatta tgccttttga       600
     gaaatgttgt tgcattgaga tttaaatatt tgatgatctg tgcatgccaa aaattctgag       660
     aatttttttt tgttttcttt gtttccacag tcagttgaac gaaatgtctg ctggaaagta       720
     tgtacgcgct ccttcagtgg attctgaaga gcaaaacgaa cagtattttg atgacgtgga       780
     gattgaaaat attggtgcca cagaagaggt tgagttccaa gaagttgaca ataataagga       840
     tgatttgggc acggaagaaa aaaatcgaga gttacagacc ggctggcgtt tttccgctcc       900
     accggcaaat tcaatgcaag cggataattg tgtccacgca gctactcgtt tggaaaacgc       960
     tccacgtttc ccgaagaatg tgcctacgaa caggcttttg caagagtgga atcgtttttt      1020
     ggagaagttt gagattgcag catcactttc gaacatcaac aacccggctc aaatggctaa      1080
     acatcttttc atgtgtatgg gagatgatct ccaagacatt gtatgcgtcg caaagctcag      1140
     accgagtctg aacgatccac gatgttatcg agctatggtc aacaatatca atgcatactt      1200
     gcgtaagttg acggatcctg tcacggaaca tgagaatttc agcagattgt ctcaaggaaa      1260
     agatgagaca atagttaact tccatgcacg cttgaaatca aaagctaaac tgtgtgaata      1320
     cggcgagcaa cacgaggatc gtttcgttta tgcgcaactg ttgatgggga tgcgcgacag      1380
     aaaattagcg gaggacgcaa aaatctatgg gcacgacata gacgtggtcg taaaggctgc      1440
     tgcgcggaag gaatcaatta catcggacat catccctcat tacaacacgg agagcggtcc      1500
     cgaagttctg gctgtgtcac gcagctctac tcaaggaaac cgaccatttc gaaaacgcag      1560
     tggaaatgca atgttatcga cccagaggaa actacaacga tacgtgggaa agcgcaacca      1620
     gggtcgtcgt tctcgatgct ggagatgcaa tagctccaca cacactcatg atgtctgctc      1680
     ggccaaggac aagaagtgtt tcggatgtgg aataattggc cattacgctt cagcgtgtcg      1740
     ccgtaagggc atccggacga tccaggccaa ggaagagaag cgtaacgcgc catcaggttg      1800
     gaccgacgac gaaaatcaga atgaggtatg aatcaaaacc aagcggtagc aatatgtaga      1860
     gaaataaaat tgcaggcaat gttacttaac tcgttttttt tttcaatgtt gcttattaca      1920
     gaaaactcgc attctttctc tcggtgatgt tttggtgaac tgtcgtttga gttcatcgag      1980
     ttctgtttgc ttcctcatag actcgggagc agatgttaac atcattggtg ggaacgattg      2040
     ggaaactctg aaaagggaat atcatcaaaa gattgcgaaa ctagaaccac tcaacattca      2100
     aacggctaag gaattacgag ctttcggtac tgacaaacca ttagaggtta gatgtgcatt      2160
     tcgggctaag atagaggtta ctcaagcttc caagccgatt gtagaggcag atttctttgt      2220
     ggtagcaaac ggccgtcgtt ctttgttggg aagatcgacc gccagtaagc tgaggcttct      2280
     ggaagcaggt ttgtcagtaa accactgcga agacgcgaat gccatagaac ttttcccgaa      2340
     gatcccagga gtcaaagtta agtttagcat tgacaagtcg gtgccacctg agcgtaacgc      2400
     ctactttaat gttccggcgg ccttccgaga agcggcgaaa cagcggttag ctgaaatgga      2460
     agccaagggt attatcgaga aagtgacatc cgcacctgag tggataagtg ggatgtctgc      2520
     cgtagcgaag gggaagagcg atttcaggtt ggtggtaaac atgcgtggac ccaataaggc      2580
     aatcaaacga gagtacttca ggcttccctt gttggaagaa atgagggtaa agttgcatgg      2640
     agcacgaatt ttcaccaagc tggatctgag caatgcgtat taccatcttg aactctctga      2700
     agaatcccgc gacctaacca cctttttagc tgaaaacgga atgtaccgtt tcactaggtt      2760
     aatgttcggt gtgaattgcg caccagaagt tttccagcgg gaaatgtgcc gtatgttgga      2820
     gggcgtggat aacacaatcg tctggataga tgatgtactt ctgttcgctg ggaccctaga      2880
     agaacttaga ctaatcacag aacaagttct ccagattttt cgaaataatt gcctttcatt      2940
     gaacaacgac aaatgtgagt ttgagaaaac tcggatcacg ttcgttggac acgagttgga      3000
     cgccgaagga ttccacattg ataaggcgaa aatcagagat cttcaaaaat ttcgccagcc      3060
     ggccaatgta tctgagctcc ggagtttctt agggcttgcg tccttcgtta gtccgcacat      3120
     caggaatttt gccaacattg ctgtccctct atgggccgtg acagcttcaa aagcgtggtt      3180
     ttggggacca gagcaggaaa acgcatttga ggagttgaag ggtcgtattt cgagctgtac      3240
     cacgacttta ggctacttct cggagaaaca caaaactgta ttgtatacgg atgcttctcc      3300
     atacgctttg ggtgcagttc ttattcagga agacgagaac aatacacccc ggatcatcag      3360
     ctttgcatca aaagcgctca cagcaacaga gaaaagatac ccgcaaaacc agagagaagc      3420
     ccttggtgcc gtctgggcgg tcgagcattt ttggtatttt ctccttggaa ggcatttcac      3480
     gctgcgcacg gacgctaggg gaattgtctt cattctaaac aggttgcgag aaagctcaaa      3540
     gagagcgctg aacagggctg atggttgggc gttgagatta agtccgtatg actacgatgt      3600
     agaatatgtc agaggtcgag aaaacatcgc ggatccatct tcgagattat actgcggcac      3660
     ggatgagcct ttcaatgaag atcagagtcc ttgggaatta gctacgttgg aggctaatgc      3720
     agttggtttt ctcacggagc aagacattcg ggaagcgact gccaacgata cagagttaca      3780
     taaggtaact ttagctttga aatcaggtca gtggacagtg gacctaaaac gataccaatc      3840
     gcttgcggaa aatttgcatt tcgaaaatgg gattcttgtg aagaatggtt gtgcggtaat      3900
     tcctgctaag ctgcgaaaca aaacgctaga agtggcacac gacggccacc caagcgctgc      3960
     gaaattaaag accatcctac gagagcgtgt ttggtggcca ggtatggctg cggatgctgt      4020
     gaaatgggtc gacacttgtc gtacgtgtgc tatcaatggt cgtccagaga aacctacgcc      4080
     aatgagaaga attttctctc ctacgacggt ttgggaatcg atcgcggtcg atttcaatgg      4140
     accttatgca cggtttgggg gcatttcagt gttgcttatc gtggattatc gttctcgttt      4200
     cctgattgct cgtccggtta agtcaaccgg ttttgatagc accaagcgtg tgtttgacga      4260
     ggtatttgga agagaaggtt ttcccaagaa catacgatcc gataacggac cgccgttcaa      4320
     tggcattgag tacaagcagt actgtgccga aaggggaatc gaaagaatct attcgacacc      4380
     attatttcca cagcaaaatg gtttgataga aaactacatg aagctggtca atagggccat      4440
     gactgcggcg gcgttgaaca atacggattt caaaggcgaa ctacaagcaa cagtaaatgc      4500
     acacaatgcg gcaactcatg cggttaccgg atttcctccg gaggaagtta tgctgggccg      4560
     caaaataaaa cgaaggctcc cacttcttct tcatcaaaaa tcacagcatg atgataaatt      4620
     gcttaatgag cgggacaggc tggctaaaat caaagggaag gaacgagaag atgctaggag      4680
     gggcgcccga gcttgtcgtg taaagccggg tgacaccgtt attgttgagc gacagtctaa      4740
     agggaaagct gtgtccagat ttgaccccca aaggtttact gtaacggagg agaataatgg      4800
     caatctcgta ctcagcaatg aggatggaca aaccctaaag cgccatgtaa cccaaactaa      4860
     aaaagtgcac aagtggcgtg aaagtaacga aaataacccc aatgatgcag gggaaaagtc      4920
     tacagtgcga cccaccagag aaaggagagc tccagcgtat ctcgaaagct acgttcgtcg      4980
     cgtagaaact tgataatgtt cttcatcgta tttaccgttc ttgtaattgc aaaataaaca      5040
     gttgaattta atgcctctat tgtatatctt tattttcatt tttttgggaa aggaggaaga      5100
//
ID   Gypsy-373_AA-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-373_;
KW   Gypsy-373_AA-I; Gypsy-373_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-311
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-311
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 128-128 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 311 BP; 71 A; 79 C; 68 G; 93 T; 0 other;
     tgtgggttat tggtcaccct attgtatctc agtacccgaa atgactaaga gttcattttc        60
     cgatataacc gttctctctt ttaatgttca ttaccgcaga gcagagcaat caacgacatt       120
     ctcatattct ctccccttta tggtcttcgg gttttagcag aagcttcgtg ggtagttgcg       180
     tgttcacgaa gttgactctg cctctttcta cctcggacca tcgtgcagct aggacgtgcc       240
     agcaagcagc tcccgttcca agttccccca aaaaggcgtt tgcggtaaag tgtagaaggt       300
     aggactccac a                                                            311
//
ID   Gypsy-374_AA-I repbase;    DNA;    INV; 7069 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-374_;
KW   Gypsy-374_AA-I; Gypsy-374_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7069
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7069
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 116-116 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7069 BP; 2729 A; 1116 C; 1179 G; 2032 T; 13 other;
     ggcgcccgaa taaaagtgac agtgaaaatc ttagtaagga gtttcagtag cacagtgatc        60
     agttaagctc tgcaagcacg ccgtattaga ggatagtgcg caacttagtt aaagtgtctt       120
     cgagttcaca cgtcagagta gtggaacgaa gtgaaacttc cgaaacataa cwatatcaca       180
     atcaacagtc aacgattgta gccgtattga gaggtgcccg agtaccgaaa gaaaaaggga       240
     atcaaccgca ataccgagac ggttaggaga ttatcactgg agcgagtgta gacctgatca       300
     cagggaatcc ggccttgtct acacggagta ataggattcg ataacccgac ctgcgaccac       360
     aacttggaag aagcgtcacc gatacaggat agacgatttc cggtcacgga tcccgcagtc       420
     gtgtgcgtac cacacgatgg tcaaaagtaa actgtaagta ccaaacaatt ttttatatac       480
     aagtgaaaaa caaataaata caagaatcaa atacaagaaa tacatgaaat ataaagtgat       540
     ttaaatatca aataaaagcc agaaaaaagg caaaagcaga aagctctaat aaagcttata       600
     aggtgaaaat aatttaaatt taattcaact cgcccactag aaaaatcgtt atagacgata       660
     gtgtgtttaa taaaactaaa aataataaat taattcaacc cgcccaccag aaaaatcgtc       720
     atagacgata gtgtgtttaa aactgaataa aagatttatt aaaatcaaat taaattaaga       780
     acgaacgcaa cgagcaacca aaaacgaacg caacgagcaa caaacataaa ttttagattt       840
     atatttmtat ttctattttc tattttcatt tcatttcatc attgaaaatt taattaatct       900
     tttcgatcaa ctatcaatca aaatgactac tcaaagtgtc agtgttgagg atattctaag       960
     cagactatct gctttagaaa acgcgagtgc attaacatct caggatgagg atcttagtga      1020
     tccaccattc tttccagttg gaccgaatgg tcagtctatt aatttggatt ttatagagaa      1080
     aatccctgat tatgttagag atcttcctat atttaaagga aaccccagtg aattatcagc      1140
     atggataaat gatgccgata acattataca aagttacaaa ccaaaatcaa atagttctat      1200
     tgatgaacga aataaatttc atataatctg taaaattatt agacgcaaaa ttaaggatga      1260
     agcgaacgac gcgttagttt catccaatgt taatattaat tggatagcta taaagaaagt      1320
     attgttaacc tattatggcg agaaacgcga tataacaaca ttagattatc aacttatgac      1380
     gagttcacag aaaggtaagt ctttagaaga ttattttgag gaggtgaata aaacattgtc      1440
     attaattgca aaccaaataa aaacaaacgg aaaattcaca caccctgaag caataagagc      1500
     gcttatagat acatacaatg agaaagcatt ggatgcattt atgagaggct tggatggtga      1560
     tttattaggc cagtttttga aaaattaccg acctgattca ttagcacaag cttacgctta      1620
     ttgtgtaagt tttcaaaatg ttgaatttag gaaaaacatg attaaaggta ataaaaaaga      1680
     agaacatcga gcgataccta aaaatttaat tccggtaagt acgtttaata gaattccacc      1740
     aaaaataccc ccacggaata ttaatacttt tagacctttc cagcaaaatt ataacccaca      1800
     attacaatat caacccagat ttttcccaca gcaatttaat ccaaatttgc agcaatttag      1860
     acaacaaccg ggaatctcca acaataataa tttcagacct ccagtaccac aaaggaagga      1920
     caagcccgaa ccgatggaag ttgatcagtc gttaaggtca cgacaggtta attatgcgaa      1980
     tagaccacaa aatatcagtc aaaatcaacc gccactaaaa agacagagaa tgtattttgc      2040
     accaacagat tcacaaaata ttgaagatct acaatataac caacaatatg tagagaatga      2100
     aactctaaat attggcgatg gaawttatga tgacgatcca aatatacagc aatttgatag      2160
     atatcttcgg acctacgagg ctcaagcgga aggttcaatt catgaattag atgagataga      2220
     aggaaatgat aatgtagagt ttaatttttt aggatagatt ctacattacc atattttctt      2280
     tatggtaatt tgaaacaacc tttgaaagtc ttagttgata caggttcgaa taagaatttc      2340
     attcacccac gctttacaaa attttatcat cttgtaaaaa aaccatttaa tgtttcttct      2400
     gtaggaggtg acatcaagat aacgaagtat tctcaaggaa aattttttaa acctcattcg      2460
     gatattattg ttaaatttta ccacatgaaa gaattaaaaa catttgacgc tgttttaggt      2520
     catgacacaa tgaaggaact aaaagcagtt ataaatatag cgaaagaaaa acttattttg      2580
     ccaaataaaa ggataatacc tctccttcaa cataaatttc aagaggttaa taaaattcaa      2640
     attagaaatg atcatttgaa tgataatgaa aagaaattat tgaataattt tcttagtaac      2700
     tatcaggatt tatttcagcc acccgatgag aagttaccat ttacaactag aattaaagca      2760
     actataagaa caaccgatga taaacctgtt tatagtaaaa gttatccgta cccccaagct      2820
     ttgaaaaatg aagttaataa gcaagtagaa aaattgttaa gtgatggaat tatacgacca      2880
     tctcattcgc cgtataattc tcctgtttgg atagtaccwa agaagttaga tgcttctggt      2940
     cagaaaaaat ttcgtatggt tattgattat agaaaaatca attcaaaaac agtaagtgac      3000
     aggtatccaa tcccagatac tgcwgccgta ttagcaaatt taggaaaaag taaatatttt      3060
     acaactttag atcttgcatc aggatttcat caaatcccaa tgtcagaacg agatattgaa      3120
     aagacagctt tttcagtaaa taatggtaaa tatgaatatg tcagattacc atttggattg      3180
     aaaaatgcgc cctctatttt tcagagagtg atggacgacg tgttacgaga acacattgga      3240
     aaaatttgtt atgtttatat tgatgacata ataattttta gtgaaacaat tgaagaacat      3300
     ttaagaaatt taaaaatagt ttttgagact ttgagaaaag caaattttag aattcagcca      3360
     gataagtcag aatttttgaa aaattcagta gaatttttag gatttattgt atcttctgaa      3420
     ggattaaaac caaacgtaaa gaaaattgaa gctattaagg attatccgga acccacaaat      3480
     ttaaaggaat tacgatcatt cctcggactc tcaggttact atagacgctt tgtcaaagat      3540
     tatgctaaaa tagcaaaacc attgacaaac cttttaagag gggaggaaat ggttaaggat      3600
     aaccataaag ctgatgttaa agtaactaga cacaattcga aaacatttaa aattagtttt      3660
     gattctttag cgaggaaatc ttttgaatta ttaaaggaaa ttttaacttc aaacgatgta      3720
     ttagcattcc cagattttga aaaacccttc attttaacaa cagatgcttc agataaagca      3780
     atcggagcag ttctgtcgca acaatttgat gatggtgaga gaccaatwac atttatttca      3840
     agagctttgt cgaagactga ggaaaactac gctacaaatg aaaaagaaat gttagcagta      3900
     gtttgggcct taggttcttt aagaaatttt atttatggwg cwaaggttaa aatttataca      3960
     gaccatttac cattaacttt tacaatttcc ccgaaaaata acaatgcgaa gcttaaacga      4020
     tggaaagctt atatagaaga acacgattat gaaatgtatt ataaaccagg taaatccaat      4080
     gttgtagcgg atgctttgtc tagaattcaa tataattctt tgacacccac taggaattca      4140
     gcagatgatg atgacagttg ttatatacca tcaactgaat cacctatcaa tgtttttagg      4200
     aatcaactta ttttcaaaat aggacctaac tctaattatc agttagaagt tcctttccca      4260
     ggttacaaaa gacatatttt cacagaacaa cgttttacaa ttgaattttt aaaatcaaaa      4320
     atgaaaaatt atttaaaccc aggtttattg aatggtattt atactagcga acctataatg      4380
     gctattattc aggaaattta taaggaacat tttaatccaa gaaatgttaa agtgagatat      4440
     tctcaaaagc aggttactga cctaagtgat gaagaaagac aattggaaga aatcaaaatt      4500
     atacatttat ttgctcatcg aaatgctaag gaaaatgctt tgcagttgtt gaaaaatttt      4560
     tacttcccca gaatgaataa aattgttcaa caatttgtaa agacatgcga aatttgcaaa      4620
     acggaaaagt atgaaagaaa tccccaaaag tacatccacg taaaaacccc tattccaaat      4680
     tacccgtgtg aaattattca catcgatatt tttgtttacg atcagaacaa tctttttata      4740
     tcttcaatag ataaattttc caaatttctt aaaatgagat cgattaaatc gaaatctatt      4800
     atggatatac aagatgtgtt aatacagtta ttatttgatt gggatgtgcc atcacaaatt      4860
     attatggaca atgaaagcac ttttgtttcc aatgtaattg aacaaagaat taggaattta      4920
     ggtattgaaa tttataagac accaatacat mgatccgaga cgaatggaca agtagaaaga      4980
     tgccattcga caattagaga aattgttagg tgtattaaac ttgaaaatcc agagttatct      5040
     gtaaatgaac ttatacaaat ggcagctcat aaatataata atagtataca ctcttttata      5100
     aaaaacacac cacacaatat tttattagga gaaaatgatc aaaatcttac gtttgaacaa      5160
     agaggtagac aaagggattt taataatgaa aggattacga acttatttag gaaggcagat      5220
     gaaaaaataa atcaagataa tcagtaccaa atatttgatc caggaacagt agcttatgag      5280
     aagatgcatg aattatccaa gaaaaagagt cgatatagaa aaatactagt taaagaaaac      5340
     catgatacat atattattga caattccaac agaaaaattc ataaatgcga tttaaggaaa      5400
     tttctttgaa ttcttttcgt ttcagattta ttattgtttc cattacattt tattttacat      5460
     ttattaattc acttatgcat atccatgatc tttcaaatag cccacttgca ataataccct      5520
     taggagaagc caagattaag attggttttg ttagaattat acatcctata gacttagatg      5580
     atataaagga agttatattg aaaattaaca aagatgttca acaaagagaa atttgcaata      5640
     gtttacagga gcttatcaaa attaagaatc agaaacttta tgaaacttat ttgaaaatca      5700
     aaccmtttac aagaagattt aagagatggg atgcaatagg atcaacatgg aaatggattg      5760
     caggatcacc ggatgcggag gatttacgaa ttataaactc atcaattaat tcgcttgtca      5820
     acaacaataa tcagcagatt atgatcaaca gagcactaaa tgcgcagatg caaggaataa      5880
     cggacgttac taatgaactc ttaaggaaac aatatgacgc aatgcagaac cactcgattg      5940
     aaataagtca attgataatt ttatcaaatt tagatttatt gcagaaccag atggaaacac      6000
     tagaggatgc tatactcttg gctaagcatg gaattcccag tagtaagttg ttgtcaattc      6060
     acagctttaa ccatatcgca acatcattac agcaacacga tatttaccta tcatcattcg      6120
     aagaattatt aaccagatca acagcacagg tagtactgaa ctcaacgcat atagtctaca      6180
     tattgaaaat tccccagcta tcgaaagaga tttatgaata tgattacatt gattctatta      6240
     taaaagatga aaaacggatc attctacaac aaaactatat tttgagaaat acaacacata      6300
     tatttgaaac aaatcaaccc tgtattgagc aagatggata ttatctttgc gaaacattac      6360
     cactaacata tacatcggaa tgcatcgatt tactgattaa aggwaaacat tcaaattgca      6420
     gctttgagag gatttactcg aatggaatca tcaagagaat caacgatgga acaattctgg      6480
     taaacaacgc agttgtggaa gtttcttcga attgtagtaa ctcagatcaa aaactgaacg      6540
     gaacatattt aattcagttt gagcagtgca gtttacgaat caacggagaa ctttactcta      6600
     attttgaaat ctcagtagca ggacgagckt atatgccgac aacwggacag cttgttcacc      6660
     aaatcaatat aattgatgca ccaccaccgg agtatttacg aaatctaaca ttggaacatc      6720
     gtgataaatt ggaacagata catttggaga atcgttcatt atcatggaaa ttcaacgtct      6780
     ttggatcaat tggattatct acagtctcaa tgataatcat aatcataatt gttatgcttt      6840
     acttttcaaa actctctttc accagaataa acctagaaat gccaaaacag gagatacctc      6900
     tgaaggagtt agccacggca cccgaggaaa taagcaatga gtcatcggat gaattatcag      6960
     acgacagaag acgagaaatc gaaagttttg tcaacatgcc ttcaccgtac aggaatgtga      7020
     gccaaacgct tagtcaactt tgcggacaaa gttgatttaa gaggggagg                  7069
//
ID   Gypsy-374_AA-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-374_;
KW   Gypsy-374_AA-I; Gypsy-374_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-349
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-349
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 129-129 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 349 BP; 113 A; 66 C; 71 G; 99 T; 0 other;
     agttacgacc agacctacca gatgatagcc gacacttggt tatggctaat taatggagtc        60
     atgcgcgcag tcatatgtgg aatcataaca cctgtgtcaa taataggaaa gccggcagtt       120
     cgtcagtaaa cccaaacact gattagcgga ccagcagtgg agaccagacg cagtacccag       180
     aatctaaaca gttgcattcc attctgagct atataaagca tagggaccat ttgatcattg       240
     tctttagttt ctatctaact tccaatagtg aataatgtgt tagttttaag ttaggtttaa       300
     ggaaataaaa gttttttttt tactcaaccg agtagagaaa agcctaatt                   349
//
ID   Gypsy-375_AA-I repbase;    DNA;    INV; 6858 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-375_;
KW   Gypsy-375_AA-I; Gypsy-375_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6858
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6858
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6858 BP; 2105 A; 1633 C; 1671 G; 1449 T; 0 other;
     ctggcgccca actaaacatc ccacgcatac agcattacca cctacttaat tttacggcct        60
     ttcttaagat ttgtggatag ttttactcaa gtgtagattg agttttgagt tggattggat       120
     ttagattttt gcaaatcaga tcaagatgga cttgacacat ttgaccaacg aagagcttga       180
     ctacgagctc actcttcgtg gtgtggtcaa tctcgcacct tcaacacaca gaaataaggt       240
     gttgaaattg agagatttaa tatcgaagga agatacactt caagaagcga ttcatcgtag       300
     ctctgagcac gtgatgagct ccaccacgaa cattgaaact tgccaagtta gaattgggga       360
     gttaaagaaa ttcgtcgatg aggcaattca aatcaaagat gtcgcagcta tcgcccagct       420
     gcgttcgcgt ctcctccatt atagtcacag gctcgagatt attcaacctc tcacgccatt       480
     tgtgaataca aaggaaactt tgttctcact tgtcaaagtt ctattagaag aagtggaaag       540
     tgcactatca cgttttggaa agcgattcga tcgtagtgaa agcgcagtga caagcttagt       600
     accacctggg accacggagg atcaagcata caaggagccg caggaaatag aggagcatgc       660
     atctcaaatc ctaaccgaag cgtatacgcg gttgggaatc agtggaagca accagcaaaa       720
     ccaagcaagc aaccctattg ggtcgatggc gcaaaacaca agaacgggga cgacacacag       780
     ggtacagcga cctgatcaag tcattttcgc taacggaaca aacgttggtg gaacaccgcc       840
     tctggtgagc acagacaata cagacaatca caaccagccg cgtaacaacg gaagcataag       900
     tgaagattac gatccgcagc tgccgggaac cagttcacct ctagagtccg gtcgagcaag       960
     aggactagcc ataagaagct ggcacgacat acgattcagc acaggcggta gaggaagatc      1020
     aacacaacat cctggttttg gagagcagga agccgaaaac aacaacatca acagcaacga      1080
     cgagcagaca tttagaaaca tcgtcgtcaa caatgccagt ctttacgcag atctgttgga      1140
     tcgtctagca cggagagaac tgcggacaca agcaccacca gcagagcgga atgaggaccg      1200
     acgaatgatg aaggcagtgc acaactggcc attcaaattc cgaggagaaa aggacaccac      1260
     gtcgctgaac atctttttag accgggtgga aacctttgcc aagtcggaag gaatgaatga      1320
     tgaaacatta ctctcttcca ttaaacatct tttgatggat gacgctttgg attggtatgc      1380
     ccgtgccatg tcacaacgat tactgtactc ttggcaagcg ttcaaacagg aaatcaggag      1440
     agagtttctg cccagcggat acgcacaaat tcttcgactg gaggcgagct tccgtttcca      1500
     agggcagaac gaaaccttcg ctaaatacta ccgcgatatt gcagccctat tccgtttcat      1560
     ttccccaccg atgtcagaag aggagaaatt tttcatcgtc aagaaaaata tgaacgcgga      1620
     ttacgcagcc attgtaaccg cagcacgacc agcagatctc agggaaatgg tcgaagtatg      1680
     cacaagctat gatgaaacca ggatgctgtt gaatcgacag cgtagaattc cggtcccgca      1740
     cagcgctctt ctagagccaa actttgccac accaacaggt ccaataaaat cattccagca      1800
     acagcagccg ctgagatttc ccagagtaaa catagtggaa gcgaccgaca ggaatgagga      1860
     tcactttaca caacaccata caagtgcgcc aatgagtacg gcagagggag agcaagaaga      1920
     agcagattgg caaagcagga tggatcacct cttgcaacaa gttaacgctt tgaagggaca      1980
     gtttgaccga aaacttgcga aaccgacagg tgcaattaac aatcatggac acaccacgcc      2040
     agctcggcaa acatcatcaa ccagccaccc gccacaaacg ccacccgccc agcaacagca      2100
     acgatggcaa gcagaacaac agcaggaagc atggcagcga acacgagccc agcaaaccca      2160
     tgcagcgtcc ccatctcaat acattcatcc cttacagcag caacaggctt ggcatctgcc      2220
     acagcatcag caacagtggc agcaacaacg cccagtgtta aatcagagtc aaccactcga      2280
     agcacaaagc agtgcgcagc agctgggacc gaacaatgca cgcatcacaa tgacttgttg      2340
     gaactgcgac gaagaggggc atcgcttcat ggactgccca aagccacaag ccgtgttatt      2400
     ctgttaccgc tgcggtagga aaggttattc actacgaagc tgcttcacgt gccgcacaga      2460
     tgcgggaaac cagcaagcgg ggaaccaaca atagagggga cggactctcc gctccagcca      2520
     tcagatcccc tcgacgaact ggacgaacta caaatcaata cagtcattat aaatcccgga      2580
     cacgacaata gaccacatgc agtcattagc gttcttggac gcgagcttac agctcttctg      2640
     gacagcggtg caaactgctc gttgcttggg ggcagcagca caaagctagt cgaagaacta      2700
     ggactgcgta gagaaacagt aaaaggcggc ataaagacag ccgacggaac acagcacacc      2760
     atcagcagct acgtgaggct tccgatagct tacaacaacc gacacgtgtc gctatccacc      2820
     ttgcttgttc ccaccattcc aaactgtgtg atcatgggta tggatttttg gaacaagttc      2880
     ggcgtcaagc cgatatgctg cacaatgcaa gcgacaacaa ccgacgagga aagcgagtgt      2940
     ccacccgacg agccgatgaa agatctgacg cctgaagagc gcaggctgct ggaggaggtg      3000
     ataacacaat tcccaaaagc agcggatggt acattgggca gaacaaacat ctacgaacat      3060
     cgcatcgaag ttggggacgc aacaccgaaa aaacagaggt attaccctat gtcgcagtac      3120
     gtgttgcaag aggtcaataa agaaattgac agaatgattg cgttagatgt gatagaggaa      3180
     gcggtattct ctccatggaa caatccattg gtagcggtaa aaaagaagac agggcaatac      3240
     cgagtctgtc tggacgcgcg gcatctgaat tcggtgtcag ttaacgaagg ttatccaatt      3300
     ccacagattt ccgctatcat tggaaacctt ggcggctgtt cttacatctc cacgattgat      3360
     ctgaaggatg cgttctggca acttccactc catccagcgt caagaccact cactgccttc      3420
     acggtgccat ccaggggaca ttttcagttc aaagtggtgc cctttggact atgcacagcc      3480
     agccaagcgc ttgccagagt aatgacgcac ctatttgctg acatggagcc ttacgtattt      3540
     cactatcttg acgatatcgt catctgctcg cgtacattcg ctgaacatct caaggtactt      3600
     gaagaagtag cgcgcaggct acgtgcagcg aatctgacga tctcggccga aaaatcgaag      3660
     ttttgtcgga aagagattaa atatctggga tacgtcctaa atgagaaagg ttggcaggtg      3720
     gacaacgaca agatcgagtg tatcgtgcag ttccctgttc cggaatgccg gaaagacgta      3780
     cagcggttca tagggctttg taactggtac cgacgattca ttgaggattt tgcgagaatt      3840
     gctgcaccgc tcaccgagct aacgaaggtc aaaactaagt tccgttggac gagagaagca      3900
     gacgaggctt tcctgaagct caagtccgtg ctggtctcag cgccggtgct tatcatgcct      3960
     gactacacga taccattcag cgtagcatgc gacgcaagcg atgtggcaat tggagcagta      4020
     ctcacccaag aagtgcaagg agaggagcat ccggtctgtt atttctcaca aaaattatct      4080
     tcatcagaga ggaaatactc ggtgactgaa cgagaatgtt tagcggtcat aagagctata      4140
     gaaaaattcc gaggctacat tgaaggagta aaatttacgg tgtactgtga ccatgctgcg      4200
     ttgagctacc ttaaatccct gaagaaccct acagcactgg tgagccgctg gttgctacgt      4260
     ttaaacgcat ttgactttga aatcaaatac cggaaaggtt cagtcaacgt tgtgccggat      4320
     gcgctctcca ggatcatcag tgtggcaacg ttttccctga acgacaccaa agatgcgtgg      4380
     tacaaggata tgacagagcg ggttaaaaag aaaccagcca gttttccaga gtttcggttg      4440
     gtaaatgatg agctgtacaa gaactgccgt gggacggatg aaacaggggc gctcattcat      4500
     cgatggagga aggctgtacc gcaagagcag cgcaaagaaa tactgcaacg attccacgac      4560
     gcgccagccg cggctcacct tggaatcgcc aagaccatac agaagatcaa ggcccacttt      4620
     tactggccga aaatgcagga cgatatccag cactacgtac ggaactgcgc cacttgcaaa      4680
     gccagtaaat ctccgagtac aacattgatg ccgcagatgg gagcagtaaa gccagcaaaa      4740
     ctgccttggg aactgatatc gattgatttt gtaggaccgt tcacccgctc caaacgggga      4800
     aacacggtga tgctcgttgt agtggactgg gtgactaaat atgtggtttt tcatgcaatg      4860
     cgagctgcag actcggctaa aatggtggag tttctggaga atgaagtgtt cttgaagttt      4920
     tctcagcctc gcatgatcct atcggacaat ggtaaacagt tccagtcact ggtcttccgc      4980
     tcgatgctag cccgtcacag aatacagcat atgaaaaccg ctttctattg cccaatggtc      5040
     aacaatgcgg agcgggttaa ccaagtacta gttacctgca tccgtgcact catagacgat      5100
     gatcatagaa actgggacga aaacctgtca tcaatcgcag cagccatcaa cagcgccaaa      5160
     catgaagcga caggagtgag cccgcacttc gcaaacttcg gtagagacct tctgctccac      5220
     actgaattgt atcaattgca ggaaatgaac acggaaggcg aggtgaagag tgcacaagac      5280
     cggcggctgg aagggatcaa gcgaatccaa gaattcatcg tgcagagaat caaggagaac      5340
     catgagaaat caaaacagcg atacgatcta cggaagcgtt cagtgaacta caaggaagga      5400
     gatgtggtct ggcgccgtac gttcgagcta tcctcaaagg cggacagcat aaaccagaag      5460
     ctcaacccca aattcacgcc ggctgtaatc agacaaattc tgggggcaaa tctttatcag      5520
     ctggaagacg ttctcactgg gaagaaaggc cagtaccacg cgaaagacat taaaacagat      5580
     taagtggtca agctatgtca gcagattaac tctgccaacc aagagcacgg agcttacaga      5640
     aatccatcgc caaatggaat aaaggccaaa ttcaggtgtg atgagcaata acatttcttt      5700
     caactacctc tccaccttgt ttgattcagc tacgcaagaa gagcactgcc gaccatcata      5760
     tctcgccgag aaagttaaca aaacacgctt agcggcgcat agatattcga gacttgcggt      5820
     tgacccatac cgcagtcaac atgtcgacaa agaggatctg ggagcagaaa ttagcaagag      5880
     acgcctaagc aggcttggga gattggaacc ctgaaggtcg agggaaggcc ccaaatacca      5940
     acagtgcgag tcggcacagt caagacagct ttgcaacgcc ggcgagggag attgggacac      6000
     ctgagattag tagggaggct ccaaatacca gggtcaagga aacagatcaa gctatgtaaa      6060
     caggaaacct gcggactatg aacaaaaaat ccacttggtg gcatgacctt tagccgatcg      6120
     ggacaaatcg agcaggcgag tttggtgagc aacaacaaca tctacgtcta cctcccaact      6180
     tcgaccataa gctatgggca tcaccagcca cgaaatcgcc ctaagagaac acgcgacagc      6240
     ggcaagcaac accggcctgg attggtgaca agagctttta agagcagtcc agagatagca      6300
     aaatcaattg aaaatccatt acattatatt atcagttgtc tttagggggt cgtcatgaaa      6360
     ttccactgaa agtaacgtga ccgggggcgc ggtaaaactc cttacatggg ctcatgacga      6420
     ttctggagga ggaaatgcct cttttcccta ggccagacaa caagataaat ccaacaaact      6480
     atcccaaata taattatgtt atttatgttt aatcctacta gtttagccaa ataactatta      6540
     aggattaaat tgagtgtttg ccgcagtggc gaccagtcac gagaagcagg atcaaaccgg      6600
     ttagagacaa tttgtcagaa tttagctggc gcactatcag gtttgccagg actcgctggt      6660
     acgcatattt ggatttgtga ttaagtttgt gtaagcattc agtagaataa gttctcaatt      6720
     tctagagctc ggatctagag ttaaaaatga aacatatgga tagtatccgt ctctgacgga      6780
     ctttgaagaa agttgaagaa tttttcatga gtcgttattc accgtctcat gaaaaattct      6840
     gccgttgtgg caatgttg                                                    6858
//
ID   Gypsy-375_AA-LTR repbase;    DNA;    INV; 1545 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-375_;
KW   Gypsy-375_AA-I; Gypsy-375_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1545
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1545
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 130-130 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1545 BP; 422 A; 359 C; 416 G; 348 T; 0 other;
     tgttgcgttt agatttgttg tgccgtaaaa taaaagcttc agctcagatt caacacgtta        60
     aaacgcaaac ttaaaaaaaa aaaagaaaca gaagagaaag gttgctccgc gcatcgcgta       120
     gcgaaaaccc ctgccaaacc tcccttcgca cgagaaacta gagctgctgc acacgacaac       180
     catgctattc agaccaatat cgtcgtctct tcttcgaacg acgactacgc agacaagctt       240
     cgggagcagc gagccaagcc attgagagaa gcaaggcttg tcgtccacaa tcggcagcac       300
     tcacgccgtt ttccgtaacc cgcagagccg tcggagtgga gagacaagtc gtggtactga       360
     gaaagatcag ttcgggctag tgcgtgaaat cggtcggtcg cacgcagcac gttattccgt       420
     ggtcgccgaa tcgagaggat tccctgaaca tgcggcggct ggtgattaga atttggaaga       480
     atccgccggt gtggacgtct taattagtac acgtatccaa aaataagaaa acctcctctc       540
     tatcggggag caccttgctg cgagatacat cgcgcggttg gccggattgg attccattgc       600
     gaggcaatca cgtggataac aggtgagctc aaattttctg gcggctatag aaatcgactg       660
     agcgggctat catcaaagct aacttcggcc attttgttaa ccatatagtt ggagagcaag       720
     cccgattgac gcacgttggg atagctgtcc acgttcaccc agaacaacca gggtgcaaca       780
     atagcgactt ggtcgctgac cacactctgt gcgggaagga gaggtacttc accaggtgag       840
     ccaaatcgat ttgacgttca ttggaacctg gctctaatta gcttctctgc tatcgacagg       900
     aggataagcg aaatcacacg tcgtagattt agcgagccac gaggcaagtc aggacgatac       960
     agcggaagaa cgaaagcccc tcaaaagggt aagagagata gtaactaatg actgcaggca      1020
     gaattctcat gtccaatgcc tgcagggctt ttttttcccc ttatattgtc tcgtttctgc      1080
     ttagagcaaa ggcgtctaga aggacgagtg agattcgcac tgaggacata cgagtggccg      1140
     atcgaccgca aggaaagcgt ggcgctgaag gtttggtgca tggacaactg ggtgacggtc      1200
     ccgatggccg caagaatggg agcgttcgtg cgaagccgca atgtagcgca tgttcatgcc      1260
     taaggacgtc gctcaaccta aaggaagcag cgggtagtga cgcagcgtgg cggcaaccgt      1320
     gagttaaggc aatatccatg ttagatataa gagcttggta gcttgcacta ccctaggaga      1380
     gatagggcct gagcataggc agattttgcc ccaaagaggg aaatacaaga tgttaaactg      1440
     agcttttcgt attttgtttg ttggtgcccc tagccctcag tgtttgagag aatccgcttt      1500
     ggtagttctc tagttttgct ctaccgtgtc gggaaattca caaca                      1545
//
ID   Gypsy-376_AA-I repbase;    DNA;    INV; 7624 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-376_;
KW   Gypsy-376_AA-I; Gypsy-376_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7624
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7624
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 117-117 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7624 BP; 2538 A; 1435 C; 1629 G; 2021 T; 1 other;
     gtggcgcagc cggtagctct accggaacat cgaaaaagta agtgtatctc gactccccaa        60
     aatttgaaga aaaaaaaaaa aaaataaagc aaaaataaaa atgagactcc ggtggaaata       120
     gacggagatc taacaaaaaa aaaaaaaaac gcgaacgact ccggtggaga tagacggagc       180
     tcgtcaaaaa tcagactccg gtggaaatag acggagatct gcaaaaacta aatcagactc       240
     cggtggaaat agacggagat ctgcaaaatg acaaatcgga ctccggtgga aatagacgga       300
     gatctgttaa taaaccaaaa acaatgaaaa ttgagatctt ttccggtgga aaagacgaag       360
     ttgtttgaaa agaatcaata aaaaaaaaaa attaatggaa atgaatcacc aaaaaaatcg       420
     aaaataagag acagaaatag acaaaaaaag gaaatctcta agcaaaaata aattgtacag       480
     tgccagcaaa aaaaaaatag taaaaaacaa tctcttgtta aaaaaaggta atgaaataca       540
     ttccggtaaa aacaaacggt ttgttaaaaa aaagtatttg tatataagaa aaaaaaaaaa       600
     aattgagcgg caaaaaaatt aggaatgaaa attcttgagc ccaaaataaa cacgatccgg       660
     caacgaacaa cggtttgata aaattctttt gatgaaaacc aaaggtaacg aaagcctata       720
     tccatgtaat aatatacaaa gttaaaaaaa aactaatatg aaatacaatc aaagaacgaa       780
     aaaaaaatac aagtggattt ttttttgcat ttcaggaaac tatcaaagaa aaaacttcta       840
     aaagaactaa aagaagccgt tgaaaaaaac aactccttac gggagcaagt gacacggttg       900
     tccgctgagc aaagtttggc agataacctt cgtcaagttc gatcaagcac gatgagagag       960
     gatatctccg attctagaag cgagtcggta cttgtttcaa caatgagtaa ctggacatta      1020
     gggacactaa atataccgga atgtgttccg gcggacggag aaacggaaat cgataaacgc      1080
     gcgtatgagt tctggaaaga aacgctcgtt gcctcgctgc agttggtcaa ctcggtggat      1140
     gagcaagcaa aattcggagt attcaaaatc aaagctgggg ccaaattgcg cgaaatcttc      1200
     aatactaccg tttcaaccgc atcaatgccc gacgaacgta catcaccttt ttcaaacgct      1260
     atggcccgtc tcgatgacta ttttggttct cgaacctata ttttgtcgca aagagggaag      1320
     ctgatgaatt tacgtcaatt gccgttggag tcaagcattg aattcgttcg tcgaattgcc      1380
     tctgcggcta agttgtgcaa ctatggcaac gacgaagaaa tggaagcggt cgtaagagta      1440
     atcacggctg gtgcaagtga gagcagaata agaatcttgg cgcgcagaaa ctgggttaag      1500
     cagggtaaca tgaaggacct gattgattta gttcgcgaat atgaattgga gaaagcaaac      1560
     gaggaggact tcaaaagggt tcattgtcgt ggtgaagcgg cgacggtggc agtggttgcc      1620
     aaaaaccccc aagaaatgcg aacgcaagga aattatcgtg cgaattggcg aggaaattgg      1680
     cgcggtagag gaaatgctcg aggcagtcgt ggctcaagac gaggtgtaag aggtttcatc      1740
     caaggattat cgcgaaacca acgtgatctt acctgctggc gatgcggcag tatttatcac      1800
     caaccattca catgtccaaa tgccagtaaa gtatgtcaca actgtggacg cacgggccac      1860
     attgctagag tgtgttcctc atcaggccaa gaatctcaga gcaggccatg gaagcgtcca      1920
     gctgattggg aagatcgaag tgtacctaag aaaattgcgg ccatcgaaca tccagtagcg      1980
     gatgaagaag ttatcaacga ggtacgcaaa tgcgaggaag atccggagta gattactcgt      2040
     actaattata tcacatttac catttgcttg ttggactgaa ctgaatttat agtcgttttt      2100
     tttagctatg gatggaatta aaaattcttg gatgttgaaa tccaaaccaa atcaaaataa      2160
     aaatgaaatg aaattatatt ttttttttga ctttagatca gcgactctta caaattgtat      2220
     acattgcacc acatgattga aactaaaatg atgtatactt tcgaacagaa ctacttttta      2280
     aataaatgct tcgaatgtga cacaatttaa aacgaaaata atgttatgac actcgtactg      2340
     aaatcaataa tcgtcgaata ctttttaact gataaaatac agccgatgca cagtggttca      2400
     cctccccccc tcccttaggt cataaatgca taaattcgac ttcaatgaat taatgatatt      2460
     gttcaatgat atcatgttga atacctatac aacaagggcc cttagttgtt ctcctgattt      2520
     tttgttttca cgtttcgata tgggtcactt aagtggagga ggaaagtcat aaaaattatt      2580
     ttcaacaccg ttagaaatgt ttaagttgct ttacaaatac gttatcaatg gcaattgtgt      2640
     tttcaataag aatttactta atttctacaa aaaaaaagct tccccgtcga attctttcat      2700
     gcattttcta cgggacttgc ctatacagtt gttacattac attacttttg acaaaagaat      2760
     caaataacat gaatttatga ctaatttgtc gactttcgtt tttatgaccg tcctcctatg      2820
     tagctggaac cactgtgtga cgattgagtt actgataacg tttcattgta gttattgaaa      2880
     acagttctct atttactttt aaaatctata ttaaaaaaaa actacagttt aagcaaaaca      2940
     gtcaatctag gttcagcgtt tcaatcgtca tcatcatttt gcaactagca aacatcgaat      3000
     gcataacaat catttgaaat gtactagaac tagaattgtt tattttatta gttcccagaa      3060
     gttcttcact agtcatgtgg tctatgtgat acatcctaaa aaaaaaaaag aaagaaaaaa      3120
     aaataaaatt aatgattaat tatgatattt gcaggaattg gttcaaacgt taccgagtga      3180
     gtcgaatgat ttgaaaattg acaacgtacg ctcacagaat acaccagcat tctcagatat      3240
     gagctgttta atcaacgcca aagtagcagg catagacatt gagtttatga ttgactcagg      3300
     ggcgcaagtg aatacggtta cgaaagtatc gttcaacaaa atcgtagctg acgagatatc      3360
     atcatccaaa atttttacaa ttagtaactt cgctgaccaa ccacttaaag gctatgcttc      3420
     aaatgatccc attgaagtag ttgctgtttt tacagctgag ttgttcatat ctgaagatcg      3480
     gcccataacg cttgagaagt tctacgttgt agatgaagtg cgagcactat taggtttcaa      3540
     tactgctgtc agatacagta tactagacat cggcctaaac gtacctgtgc gggcgcaaca      3600
     acttttcaat ctaagcggat ctaatattgc ccatattgaa tcttcagcac cgtcagcaga      3660
     atttcccaaa ttcaatgtac cccctgttac gcttcgatat gaccataata tgccgccctc      3720
     gcgaaacgta tatacccata ttcctgcagc attcaaggaa ctaaccaagc ggaagctcag      3780
     cgagttacta gcttctggaa taatagagga agtaacacct aacatggaca ggtcattttg      3840
     ctcatcctta cttgttgtgc ctaagggcag ggatgatata cgtctcgtga tcgatttgag      3900
     gggtcctaac agaatgattt atagaacgcc tttcaaaatg ccaacgtttg aatcaatttt      3960
     gatggagctc catggcgcgg aatggttttc taccatagac atgaaaaatg ccttttttca      4020
     tatagaatta gaccaaaact cacgccatct cacgaacttt tttgcgggcg aaggaatata      4080
     taggtataag agactaccat tcgggctttg caacgctcct gatatttttc aggaagtgtt      4140
     gcaaacagta attcttgccg gatgtgaagg agttgtcaac tacctggatg atattatgat      4200
     cttcggcaaa aacaaggacg agcacgacaa aaatttggcg aaagtgatgg aatgcttgag      4260
     aaatcacaac gttttgatta acgaagagaa gtgtaaattt gggcaacaat cggtagattt      4320
     cttaggattt cttgtgtctt ccaatggatg gaaactggca gacgaaaaga tcacagcact      4380
     caaaaacttt aggagtccgg aaacccttgc ggagattaaa agttttttag ggttgatcaa      4440
     tttcattgag aaattcattc cccaccgggc tcaacgtacg tggagacttc gtgaactgtc      4500
     aaaatctgaa catttttatt gggaccaagg attggaggaa gaatttgagt atttgaagaa      4560
     tgacgcatgg agaacgataa ccacacttgg ttactacagt aggttcgacc aaactgaact      4620
     ttacgtcgat gcgtctcctt atggtttggg cgccgtttta gttcaattcg acaaggaaaa      4680
     taatccacga gtgatagcct gcgcatcgaa aacactaact gctgcggagc aaaagtaccc      4740
     ccaaactcag aaggaagcgt tggcgatggt ttggggcgtt gaaaaattct caatgtatct      4800
     gatgagcata tcgttcacga taagaaccga tgctgaggcc aacgaattta tttttggtgg      4860
     tctacataga atcggcaagc gagcagtaac cagagcggaa tcctgggcct taaggttaca      4920
     accatacaac tttaccgtga gaagaattcc aggaaacctc aaccttgctg atgctctctc      4980
     cagactggta gtccagagcc caccggaaaa ttcattcgac gatgaagcag atgataagca      5040
     cctgctgtac ttactagatg taggtgcgat ggagctgaca tgggacgaga ttgaaacggt      5100
     ttcagaacat gacatagagc tcagtaatat taaaacagct attgaaactg gcaagtggga      5160
     gagcgggcta cgaagatatg aatcacaagc aagcagtctt cgaactatcg gatgtatgat      5220
     atttaaaaac gatcaagtgg tgttgccaca tccgttgcgc acaagagcta taaactcagc      5280
     tcatcaaggc cacatgggaa tttcatccac aaagcgtata atgcgcgaat acttttggtg      5340
     gccgggcatg agtagcgata ttgaggcgca cgtgaaaggc tgcgaaacgt gtcttttgct      5400
     ctctaggaaa aatcccccaa tccccctgac caatagagag cttccaagag gcccatggga      5460
     gatactccag atcgactttt acacggataa agaatttggg catggcgaat ttctcgtggt      5520
     ggtagatgtg tactctagat accttcacgt aatggagatg aaatcaatca atgccgaatc      5580
     gacaatcgat gcgttgaaca aaatctttct agtctggggg tatccgttga tcatacaaag      5640
     cgataatggg ccaccttttc agagtgatct gttcatcaag acgtggcaaa acagaggcat      5700
     ttcagttcaa aaatcaatcc caatgagtcc tcaatctaac ggcgcaattg aaaggcaaaa      5760
     ccaaggtctg aagaaagcat tggctgcatc taaactggat aacgttaact ggcgaatggc      5820
     actcgagagt tatgtacaca gccacaacaa ggtacgaccc ctatcgcgtc taggagtcac      5880
     tccatttgaa atgctcgtcg ggtggaagta ccgtggcacc tttccttgcc tgtgggatgc      5940
     ctgctcgggc aatgagctgg accgtgaaga aataagggaa aaagacgcgt tctcgaagca      6000
     agagagtaaa agatatgcag atttaagacg tggggctaag gaatccgatc tgatagtagg      6060
     agacagagtt gttctctcac aacagagacg gactaaatcc gatcccactt ttggatctga      6120
     aaaatacaca atactggcca gagatggggc aaaaattgtt gtaaggagtg accgaggagt      6180
     agtatattcg cgcaacgtcg aggatgccaa gagggctaat ctgaattacg atgaaagcat      6240
     cccacaggaa tctggtgttc ttagtcctaa cgttgattca acaggaggta caagtaaatg      6300
     tcagtaaaat gtttcagaac ttcaattaat taaggatttt cttataggtg gagtaaaaga      6360
     aacgagagtg gaaagagtac agcagacaac agataacttt tcacgatcga gactcaaacg      6420
     tgacatcaaa acaccgacta agtttaaaga catggttctc tatcaattat acgattaaca      6480
     gcaaagatcg atgtctcatg ttaatttatc agtcatcgaa tcgccgtttt atcaatcact      6540
     ggcaaaaaaa gatcaataaa ttgtatcaaa cttacatttt tggcgttttg cattacagtt      6600
     gggaaactcg aattttccag atccccttaa tgttcgcagc tgttgttgtc gattgtaaat      6660
     tggcgtccca gctcatcttc aaacgatgtt tttggacttt agtttttggg gtttcgtttg      6720
     tccgcccgaa tgagcataac ttcgtgacgt ggatgaaacg gattgtcctc tccctctgtt      6780
     cgcagttcct ccaacaagtt actatccgag tacggcacag catctcagca atctcccgaa      6840
     aacaatccgc caactgttca gaaagttacg gcccaacagt aacagctacc tagctacgat      6900
     agttttcatt tgttttcctg attgtgatct gttgtgactg tgagcaacgc gttgaatttg      6960
     acattgcggg tgggtaaaca aagtgaagtt ggctgaacgt gatgttcata aattgtacac      7020
     ggagaaatca gaccaaaaaa aaaaaggttc ctactcaaat ttgggtaaac tgcatttagg      7080
     gcatctagtt ttacccacgg ttgggttgtt ttgcctctct ctcgcaacag caacgttgtc      7140
     agaaacagag agagacgcac cgacccagca ttgaagttca atggaataag tcaaaattgg      7200
     gttctttcga gtttacctaa cttaagactt aaagtttaag ttgatttaac ccactacgga      7260
     gacttcgaaa gctaactctg ggtaattttt ttttggattg agtttttttt tttatttttc      7320
     ttcgcttttg tcaaacgaaa actacctaat gatagctatg cagtctaatc taaaattggg      7380
     ttatcccgtg cactgaagag ccgaattaga ttaaaaaagt caaagttggg ttgatttgtg      7440
     gctccgtgta aggggtcatg ccgccggtga tgacgatgac gctcaaattt tatacacgga      7500
     aacaaacaat gtataatact cgtcatagtt tttattatta atattccaga gtacttttag      7560
     aattaatttt cataacagac aattagtgca tcgatgcacc ttaaagagta gatgagagak      7620
     tgat                                                                   7624
//
ID   Gypsy-376_AA-LTR repbase;    DNA;    INV; 474 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-376_;
KW   Gypsy-376_AA-I; Gypsy-376_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-474
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-474
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 131-131 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 474 BP; 137 A; 76 C; 114 G; 147 T; 0 other;
     tgtggagtat gggaatggtg aaatgcattt agttgatttt taatatgtga actcagttgt        60
     tattaccatt gcagttacat tggccctttt taaatgtttt tctcgaacaa atattgaagg       120
     ttcggagaac gtgcacctta cgttctcata attttgtaga cattttcaaa ctagtcgata       180
     aatgaattga gagaagagag cagattctca gtcattcgtt ttattctcag aatcattata       240
     aaacaattga gtacttctct ctcaagattt tgtggagaga ataggttcgg atttaggttg       300
     aaagtctaag ctgagtcagt ttgaagagta tagcgatcga caacggacgc aaaatggagc       360
     gcggtttcga cgagtcaacc ggagatggtt tggcgggagc ttacgtggtt tcggccgatc       420
     accacgatag ttcggaagaa agggaaacat ttattgttcc ctccggacac gaca             474
//
ID   Gypsy-377_AA-I repbase;    DNA;    INV; 5442 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-377_;
KW   Gypsy-377_AA-I; Gypsy-377_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5442
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5442
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 118-118 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5442 BP; 1644 A; 978 C; 1362 G; 1458 T; 0 other;
     aattggcgac gagaagataa atggtatgta gttactaatc gaaatgcata aactggttgt        60
     gaaatttgtg agaaaaaaag tgggaccttc ggttcatgaa aattgtaatg gcgtctcggt       120
     gttggtcggt ccgatcggct gtgtagtttt tttttttcga gcagtattgg tgttgggtga       180
     gccgctttga aagatgttca tttcaagttg ttccgcagtt atagaaaaaa aaagaaaaaa       240
     aaacgggggc tatgtttttg ttgtggttga cagccgattg gaagataatg aaattatgct       300
     gtccgagaaa gaaaacgtga tggcagaaaa tgcgattgct tttgattgtt gtgcgaaacg       360
     atcgcatgac ctatgaggtg aacggaggta agattaatta attaaataaa accttacatg       420
     agtgaaattg gatgttatag cagaaataat tggttgaaga agagccatat gcagcaacaa       480
     gataaatcta ccctgattaa gtggtgaagt gcaagacagg ttgacagagt taatcaatac       540
     tcattgaaaa gtagaaagtg ggtctgactt gtaaaagaga ttcgtgaggg tcgaatctga       600
     tcgtaagggt cgatcaagaa ttgtcttggg caatataaaa gattatcaaa tggaaaaaat       660
     aatagattcg tgagggtcga atctgatcgt aagagtcgat caataattgt gtggggcaat       720
     ttacaaaaag ttcaaatgaa aacgagattc gtgagggtcg aatctgatcg tatgggtcga       780
     tcaataattg tgtgggacaa tttacaaagt tttcaaataa aaaaaaaaga gattcgtgag       840
     ggtcgaatct gatcgtatgg gtcgatcaat aattgtgtgg gacaatttac aaagttttca       900
     aataaaaaaa aagagattcg tgagggtcga atctgatcgt atgggtcgat caataagtgc       960
     gtgagacaaa atgttcacat tgaaaaggaa aaagcttcgt gagggttgaa tctgatcgat      1020
     tgggtcgatc aataattgtg tgaggcaatt gaaagtaaaa gtaaatgtta ttcaagagaa      1080
     acgaaaataa ttctaagagc agatcaacaa tcataagaaa ttgttgaatt gattaggttt      1140
     tttttttttc aaggggcaca tataagtgac ataaattttt atttgcttct gtaaaattta      1200
     ttcaggaatt ttaccgaaag gaccgaccaa cttccgtggg tctcatggat ttattagttt      1260
     aaacaaatca tatagtatgt gtttagtata tcgttgtgct attataatac atttcacaga      1320
     tgaacgatac gagaccgcta ccgcagttcc gatgcgagga tattgaaaaa tccaagttgt      1380
     tccgtgaatg gaatgactgg aaaagtagct tagaacgata ttttgatgcg aatgacgtaa      1440
     cggaccagta taaaaagagg gcaaaattgt tgtacctcgg aggaccgcag ttagataagg      1500
     tgttctccaa tcttccagag ggaaataaat ttccgcttgt tgctactgaa aagaaatact      1560
     acgatgtggc aattgtagcg cttgataatt attttcaacc agtaaggcaa gatattttgg      1620
     agcgtcaccg cttacgtcag atgaagcagt tgccaaacga gaaatttgct cattacatgg      1680
     taataagtgt ttttttttca tttatttttg ttgctggttc aatagttatc aaacattaca      1740
     ggttcgtcta cggcatcaag catcgttgtg tggatttgat aaatatccaa agcggacaaa      1800
     acaaatattg acggatctta tgatcatgga cgtaattgtg gaaggctgta cgtcagttga      1860
     gcttcgtcgg cgtatgttgt tgaaagaccg tacgctagat gaaatcgagg atatagcatc      1920
     tagtctagag ggtgttgatt cgcagattca ggattttgcc aagccgattg attcaagttc      1980
     tggtgtagag aaagctttta aggtcaggga aaaaccttcg aaaaaaatcg ttcgtcccta      2040
     tccctattcc gtcaaaccag gtcataggcg tcagaataat cgcttctcca gtgtggtctg      2100
     cttcaactgt ggcaagtcgg gccatatctc tacttcggaa atttgtccag cgcggggtag      2160
     acaatgcaga aactgtaatc gggttgggca ttttgaatcc aagtgcaaat catcgaatgc      2220
     caccatgaga ccagaaagtt cttcaaaagc tcctccaagt acaaggtttc gacgcgtcga      2280
     gcagcaggac accaacgata caacggctga caaagtctac tatgcatttt tttctggaaa      2340
     ctccacaaat gtgttgagat ttgacgtggg aggcgtacag ctggaaatgc tggtcgattc      2400
     cggggcggat gcgaatcttg tgaccgttga agcttgggag cgaatgaagc aatcgggagt      2460
     agtggtttca aattctgcaa gagatgtagg tcgtacattt ttgtcgtatg gtagcaacga      2520
     accactcttg gtacgcggaa cattttctgc agaaataggg attgcaaaca gaagtacttc      2580
     agctcaattc tttgtggtgg agaaaggcca aacatgtttg cttggggatt ttacggctaa      2640
     gcaactgcag gtgctgaaag tgggaaccaa cataaataac gtgccgagtg tggagccgtt      2700
     tgcttgcatc aaggatgttg aagttcatat ccatatgcaa ccgctcgcaa aacctgtcgt      2760
     acaaccagtt cgaaggctgc cgataccttt ggagtcagaa gtcaaccgta agctagagga      2820
     tatgctgaat cgcgacatca tcgaacctaa aaatggacct acttcgtggg tatctccttt      2880
     ggtggttgtc gccaaagcca acggaggact tcgcctatgt gtggatctca gaagggtgaa      2940
     ccaagctgtg atgcgggaac atcatccgat gccggtgatc gatcaaattc ttggtaagat      3000
     tggcagtggg actgtttgga gcaagttaga tattaaggag tctttcctac aagtaatggt      3060
     tgcagcagag tcacgcgata tcctcacttt tattacggaa aaggggttgt tccgttttaa      3120
     aaggttaccc tttggtctcg taacggctcc agaaatcttc caaaaagtca tcgatggaat      3180
     attgtgtgga tgtgagggta ctcactggta tctcgatgac atttttgtgg tgggaagaga      3240
     catggaagag cacgacatgc ggcttgaaaa agtaatgggt cggttaaatg aaagaggcgt      3300
     tcaacttaat cttgagaaat gtcagtttag ggcggtagaa gtagagtggc ttgggcacaa      3360
     aatcaacagc tcgggtattt ctccttcaag tgcaaaggtt gcagcaattc aatcttttcg      3420
     ccaacctaca aatgagagtg aagttcgcag cttccttggg cttgcgaact acttaaataa      3480
     gtttatagca aatcttgcga ctctagatga gccactcaga gcacttacaa ggaaaggtat      3540
     gaagttttca tgggattcac aatgcgagga atcatttcag gccataaagc aagctatgac      3600
     agacgtaaag gttcttggat tttacaatgc tagcaatacg acagccgtaa tcgcagatgc      3660
     aagtccaacg ggactcggag caatgcttgt gcaaaccgat gatgaaggtc aacagaggat      3720
     tattagcttc gcgtcaaagt ctttgacgga aaccgaaaaa cgatactgcc agacggaaaa      3780
     agaagccctt gcgttagtat gggccgttga aagatttcag ttctacctct taggaagaaa      3840
     gtttcaactt gtgaccgatt gcaaatctct ggtgtactta tttaccccta ggtctcgccc      3900
     ttgtccgcga attgaaaggt gggttttgag gcttcagtgc ttcgattatt cggttactca      3960
     tatacgagga gacgaaaacg ccgccgatgc tctttcacgt ctctcatgcc ctgccgtaaa      4020
     accctttgac tctgctgagg agatcatggt acaacatatc gccgccacaa atgctgaggt      4080
     tgttgctatc tcttggaatg aactggttgc cagaacgcaa gacgatgaaa aactggaaga      4140
     tatactgaag tgtttaaaag atgacaactt ggacttactt cctatcgctt accgtgttat      4200
     ttcctcagaa ctgtgtgacg ttggtggagt acttcttcgc ggggatcgca tagtgattcc      4260
     aactgtcttg cgtcagagag tactggacat agctcatgat ggtcatccgg ggatgacaat      4320
     gatgaagtcg tatctccgaa ctgctgtttg gtggcctaaa ctcgatgctg atgtggagac      4380
     gtttatcaag aactgtcgtg ggtgtacact agtggctgcc catgatgccc cagaaccaat      4440
     gatgcgaaag gaattgccta ccggaccctg ggaagacatc gcaattgatt tcctaggacc      4500
     gttacccgag ggacaacatc tgtttgtgat cgtggacagc tacagccgat atttagaggt      4560
     gtgcgaaatg gggaatactg actctaggga aaccatcgag cgtctgcgag aaattttcag      4620
     ccgttacggc gtgccatctc tcattaaagc agacaatggg ccaccattct cgagtgagga      4680
     tttcaaaaac ttctgtaatg agtatggaat tcagctggtg aactcaatac cctactggcc      4740
     acaaatgaat ggccaggtag aacggcagaa tcgttcaatc cttaagaggt tgcggatcgc      4800
     ccaagaactt gggaaagatt ggcgaaaagt tctgcgggat tttctgttgg tgtatcatgc      4860
     aaccaatcac tctacaacgg gacaggcgcc atctaagctg atgtttggac gccgcataaa      4920
     aagccgactt cctagagttc cagctttcat tgatgatgaa tcggtgcgcg ataatgataa      4980
     tcttcaaaag gaaaagggga ggatgtattc taatggaaaa cgtagggcgg tatctagcga      5040
     cattcaagaa ggtgatcgag tgttcttaaa gcggatgaag aaggatcaca aattacaggc      5100
     cgactttgct cctgaggagt ttcaagttat aaagaagaac ggttcagaca caactgttcg      5160
     ttcaactatg tcaggaaagg aattccgacg aaacgttacc catttgagga aagttcctga      5220
     gaccagtgac aggatttcga aggagagaat cgaatcacct gaaatggatc atcaacaacc      5280
     caggcaggaa ggaacattga actcttcaac accggaggct gataactata ccgatccgct      5340
     tgtaccgcag gaagagaact ctcgaggtaa acgcaagcgt cgtgaaccca ttaggaacga      5400
     agactacgtg ccgtactaca tcgaagaaac aaatggtggg gt                         5442
//
ID   Gypsy-377_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-377_;
KW   Gypsy-377_AA-I; Gypsy-377_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 132-132 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 243 BP; 81 A; 27 C; 86 G; 49 T; 0 other;
     tgtagtatct ggcagcacgg ttaacacgga gaatgagtaa gacattgtgg agagttgaac        60
     aacacgcgcg atggatgtag aggacggtgg gagaatgcaa ggacggggag agaaggggac       120
     ggggtcgggg agatgtgtgg agatggtgga cacgagagga agtgaataaa tgaagcgaag       180
     tgattgtctg gttaaataca agttaaactg tgtcattaat tcaaggaaat ctgaaatagt       240
     aca                                                                     243
//
ID   Gypsy-378_AA-I repbase;    DNA;    INV; 5890 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-378_;
KW   Gypsy-378_AA-I; Gypsy-378_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5890
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5890
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 119-119 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5890 BP; 1896 A; 1190 C; 1363 G; 1441 T; 0 other;
     atggcgtggt ttccgctccc aacaagtaag tttaactcga ccagcagata ttcataaagt        60
     taatgtaaat taattgcgat ggcaacggaa aaaatgtata tacttaacgg agcaaaaaaa       120
     aaaatggcaa aaaaagatga taagccaaac tcaaaggaac ggaaaatggc aaaaaatgaa       180
     tggtaagcca attttaaatt tcgggctcga aaataaataa gccagatatt tcgtttgtga       240
     caaatgtcat gagaaaagat caaaggcaaa aaaagtaaga tgagcctctg acgcaaaatg       300
     gcaaaaaaaa gaaggtaagc catcaagaat atcatgaaga aaacgtgtgc catcgctgaa       360
     aaaaaatata acattagtcc tagagtaaca agcacgaccg agcatattac aagtagttca       420
     ctattacagg aaaaaaaact cgaaattgga tacggcgatt agagacttat cggcagctaa       480
     ttctagcaat gctcatctag cagcagagct gctaagagcg caggagacaa ttcgttcact       540
     gcaggcaagc ttatcatcgg ctcgaagtga gtgtggagaa acagcaagaa gcgaaagcgg       600
     cgatgcgaac agtatcgagt ttgaagccga tcttggtcct tccagtacaa gacaacgatc       660
     acgacgccag aacgaatcca ctgtcgaaat gtcccgattc gtttcctcca tgaatcaaat       720
     gtcagtttcg tcgatcagtg tgccagagtg caaaccgggt acagatggcg aagatatatc       780
     caaggttgat tttgaagcgt ggcaagacct gatgtccaac tctctagcgt tggcaggcat       840
     aactgaagaa gctactaagt ttgtagtatt caaagtcaag gcaggtcaaa agcttctaga       900
     gatctatcga gcaacagaaa cctccgatga ggcgcccgat gagaagctac ttcctttttc       960
     taatgctatg ttccgcctaa gaatgtattt cgcttccact tccgacatta tgcttcaacg      1020
     aagaaaacta tcccttatga cacaacaagc caatgaatcg gatttggcat ttatccgaag      1080
     agtgggactt gcagcaagac aatgtgagta tccagagggg aaacagtttg aggagatctt      1140
     gagcactgtc gctgaacagg cgaggcataa ggaagtgaga atcgccgctc tcaagatgat      1200
     gagccgcagg gggtcactcg ctgacttgat caacaaggtc cgtgaaattg aaacaatacg      1260
     tttaaacgag gagtatgtct ccaaaaagca aggcgtctcg gaaccatcag tggcatccgt      1320
     aaatgcggtc cagagcatcg ccggcccctc tcgttatatt gcgaatcgct caactccagc      1380
     gtatggtagg actccgtttc aaaggtcgaa ttttcgcggt ggacgaggtc aacggtcaac      1440
     tcgaggaggg ttagtctggc gaggttcgag ctcggtagtt cctgaccgat gtactcgttg      1500
     caacagcgtg tatcattccg aggaaagatg ttttgccacc aagatgacgt gccataactg      1560
     tggtggaata gggcatctgc tgagagcttg cacccgaccg gtagcagctc aaaacagacg      1620
     atatatcgac aaccgaacac cagctgaaga gccattgaaa gtggcagtaa tcggagctaa      1680
     accggaggca aaccgagatg aggaagaagc caaacagcct gtaagtgaag tttgaattaa      1740
     ctcaaaatga atatcatttc cgggcaaatt tgatgaaata gattctgtac ctctcataac      1800
     attttaaatt gaaataaatc aaatgaattc gtaacacaaa gtttgcattg atttcaatgt      1860
     gattcgactg actacatata ggggaagagc accaattttg accaagcatt cattttcgac      1920
     agattcatac gattttaatt acttgatttg aaagtccgaa tactggcata gcattcttgc      1980
     tcgaaaatta gtgcttttac cctattacgc ccgttcaagt actagtatgc tcgtagttca      2040
     acatgtattt tttgcttcgt taggtactcg gagcgaaaaa ttcaagcgag actgcaatat      2100
     ccgtagtata cgcgccaact gacagtggag taattcatgc taccgttgcc ggtatgccgt      2160
     gtgaatttct aatcgactca ggagcgcaag tgaacacact gacggaatcg acgtttgagc      2220
     taatggtcgg aaatgagaag tatagctcag agctacataa catacagcct ggtacagatc      2280
     ggcctttgaa agcatacgcg acgtcggatg gaatacaggt cctatgtact tttgaagcct      2340
     tcctgtacat atcggacgac cgcccgacgt tgctcgaaaa gttttacgta gtcagagagt      2400
     ctcgttcact gcttagtcga tctacagcga ccaggtacag tattcttctc cttggattaa      2460
     cagtgccggt tgaacgtagc agaacggata acagcagcaa tattgcagcc gttagctccg      2520
     tagaaccatt cccgaaattc aacatacccg ctataaaaat aaactatgac gatgcaaaac      2580
     caccatgtag gaacatttac atgaatgttc caattgccat gaaacacatg gtaggtcaaa      2640
     gactcgaaga attgatatcg gcagatataa tcgagcgggt cacggaaacc atggatgcat      2700
     cgttttgctc gtcaatgctc gtggtcccaa aaggagcaaa agatttccgt ctcgtcgtcg      2760
     acttacgagg cccaaaccgg tacatcctac gtagtccata tgccatgcct acattggatc      2820
     aaattcttgc gaaattggat ggcgcgaaat ggttctccac cattgatttg tgcagtgcat      2880
     tctaccatat cgagctcgat gaaacatccc gtcatttaac taatttcatg acagagttcg      2940
     gtatgttccg ctatagaaga cttccgtttg gattatgcaa ttctcctgac atattccagg      3000
     aagtaatgga acgtaagatt ctagtcggat gcaagggcgt gtgtaactac cttgatgatg      3060
     tcctcatatt cggtgagaca aaggaggagc acgacaagaa tcttgccgat gttcaggaac      3120
     ggttgaagga tcacaacgta aaaatcaatt atgcgaaatg tgtcttcggc agacaaaaag      3180
     tgtcgttcgt tggattcgag ctaacagctg aaggatggcg aatcgaccaa gagaagatga      3240
     atgcgattag aaacttcaga cgtccaacat catgtgctga agttaaaagc tttctcggct      3300
     tgatcacatt tgtcgataag tttctcgttc atcgtgcgac aaaaactgag cgcctcaggt      3360
     cattggcaaa tgcaacaggt ttctattgga cagatgctga agaagcagaa ttcaagtccc      3420
     tacaaactga agcagtagaa gcgattagaa cacttggata ctacagcaat acagacaaaa      3480
     cggaactctt cgtcgacgcg tccgctgtgg gattaggtgc tgtcctggtc caatatgatg      3540
     cgaaaggtgc gccaagaata atcgcttgtg cttcaaaagc gctagccgcc tcggagcaaa      3600
     actacccaca ggcgcacaga gaagcattag cggtagtgtg gggcgtcgag cgtttcacat      3660
     tctatcttgt cggtcgacct ttcattatac gtacggatgc ttcagcgaat gagtttattt      3720
     accattccaa ctatcgcatc ggcaaaaggg cgttctcaag agcagaagga tacgctttgc      3780
     gattacaacc gtatgatttt ataatggaaa gagttagagg agaagacaac gttgcggacg      3840
     cactatcgcg gttgattcga gattcacagg aacagaaacc attcgacgat gatagtgact      3900
     accacgtgtt gtacagtcta gatacaggta gcatggacat cacgttgaac gaaatcgaaa      3960
     caaaatccga aaaagatgaa gaaatggaga acctaagatt tgctttgaag catgacatat      4020
     ggcccaaaga cttgcgcaaa ttcgaagcac acaagaaaaa cctccatgtt cttggagcac      4080
     taatcagcaa aggagacaga atagtattac ctaaggacct taggactaga gcgttgaaat      4140
     cggctcacag tggccacatt ggagaggtgg ctatgaaacg catcatgcga gatttctttt      4200
     ggtggccaag gatgagcaca gaaactgaag aattcgtaaa aaactgtgag acgtgtgcgc      4260
     tgctgtcgcg aaaaaatcca ccagtaccac tatccactcg tgaattgcca gagaggccat      4320
     gggagattgt ccaaatcgat ttcctgcaag tgccggggta cggaactggt gaatttctta      4380
     tggtagtcga cacgtactcc aggttcctgt ttgtagtcga aatgcatcgc accaatgctg      4440
     aggctaccaa cgcggctctg caagagattt ttaaattgtg gggattaccc ctcttaatcc      4500
     aaagcgacaa tggacctccg ttccagagct ccgcattttg caatttctgg acagaaagag      4560
     gagtaaaggt ccgtaaatca atcccacttt gcccacagac aaatggcctg gtcgaacggc      4620
     aaaaccaggc agtaattaaa acattgtctg ctgcaaaaat agaaaataag aactggagga      4680
     gagaattgaa cgtttttgtg cacaaccaca acacgttgat cccacattcc agattaaacg      4740
     taacaccctt cgagttgctc gctgggtgga aattcagagg aacatttcca agcctctgga      4800
     atgatggaaa tatcgaagaa ttggaccggg aaaatgttag ggagagagat gcggaagaaa      4860
     agctgaagag tgcaaaacag gcagatcgcg caagacaagc caaaccatca gatattcgta      4920
     tcggagatgt agtattcgtg aagcaccaaa agaagtccaa gacagattca acattctctt      4980
     cagaacactt tacagtggtg gcacaggagg gcccgaagat ggtgattgta agcggcaatg      5040
     gggtgcagta tgcaaggagt gtcaatgatt tgaaaaaggt tccatgttct gctaaatcag      5100
     ctgtctcaag tgtcctgaat tctgacgaag attgcgaatc cgacgtccag ccgggggaaa      5160
     cagaagctga ccaagaagag gactgcagtc aaactcgatc aggactacgt cgaagagaga      5220
     tcagaaaacc cgcgagattt aatgatgatt tcatttaccg aattttccag tgaagtttca      5280
     ttttcagttg gcgaaaatct atggaaaata aagaaaatac ggatttaata ataattagag      5340
     aataacaatt accagaatgt gttttctttg gggcagttga tctaatggga cagcataacg      5400
     catacaaact cctctgtact gaactagatc ggaacatttg gtcgtcatga taaccggatc      5460
     aatagaggct aattattctt cattaaaacc acaatcagat acaatcatcg agagttgatt      5520
     cgatggtcga cgttttccaa ctagtactta ctcaataagg aaacaattat tgataaaact      5580
     ttccaactaa ttggcagtaa taattttcat cctccgctaa atcttatttg taaataattt      5640
     tgacagttat ctaccgtgaa ctggtgacgc tatgtgtgac gttcaccatt ttatggggct      5700
     atcaaaaatt gcgtccatga cgttgaggaa tacattgtaa gaagtgttgc cagaatttaa      5760
     tatgtcatca tgtaaatttt attaggttaa ttttgaaatt gtaaaatatt aaaaaaagga      5820
     aggattttga aagaatttta aatttaaaga aagtgataaa atatcctgga agagtagaga      5880
     aggagaatat                                                             5890
//
ID   Gypsy-378_AA-LTR repbase;    DNA;    INV; 545 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-378_;
KW   Gypsy-378_AA-I; Gypsy-378_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-545
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-545
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 133-133 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 545 BP; 216 A; 83 C; 128 G; 118 T; 0 other;
     tgtgggagta taaacgacta ttatgattga taaaaaaata tacttggcat ccatatatga        60
     caatattaaa taacctcata ttggcctatt aggaataaca gtgttatcga ttgacgaact       120
     tccgagatga ccggaaactg gaatgaatcg agaatggaaa aacttccaag actagcgttg       180
     acagtagaca tcatacgaaa cccgaatgtt tgagagaagc cgatgtgaac gcgagcatta       240
     tatgaaaaga gcgaagagac acctaaaata agagaaaatt gagcgcacga acctaaagaa       300
     aatttaggga tagaacgaaa ttgagaacaa gatttgtaaa ataactccag gtagcgtaat       360
     ctcagaatta aaggagagag agaagttggc ctagagagag cgagaaagag aaaatccgag       420
     attgagcttg atgccgaacg aagtgagatt cgtaggattc agtgttctat ttccgaagcg       480
     agcagttggt ttaatcggca gctcataaaa aaaaaaacca aacaagatgg ctaagcggta       540
     cgaca                                                                   545
//
ID   Gypsy-379_AA-I repbase;    DNA;    INV; 6887 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-379_;
KW   Gypsy-379_AA-I; Gypsy-379_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6887
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6887
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6887 BP; 2143 A; 1697 C; 1604 G; 1443 T; 0 other;
     tatggcgccc aactgtaaat caccacaatc cactttcagt taaaattttg tcaactatta        60
     agtcaacagt gatagtgagt cgtgttgtgt gtttgaatat ggatatccta cacctatcag       120
     atgaagagct cgactttgag cttcagctga ggaacgagga gcaacagaga cgaacaaagc       180
     gggaaaagac cagcaaactg cgtgaataca tcgaaaagga gcgagcaaac ttggagatgc       240
     ctgttagtgc agaccatgtc attagtcaag aagaccacat gcagctttgc caaaccaaac       300
     tgcaatacat taacgatcga gttcggaagg gcctggagaa agaggatgcg ttggagttag       360
     caatctgtag gagtaagtta ttgcattacc gagcacgact gcagctgatc accgagaaga       420
     gcctcacagg atacataaaa aaactggagg aggttgcaga acaatcgctg cacagaatta       480
     acgacttctt cctcgataca accatgttgg acgtgcatcc acctaaagca gtcctagaag       540
     acaacggggc aattcttcca gacgatgcgg agtttctgga gcgactaaag aatgcgcagc       600
     tgcaatccag tgtgaagtcc gacagaggac accaggcggt tggtcagcat agttcagccg       660
     aacaacattt ggatcaatta cgacatctac aacatcagca acaacttctc caaagacaga       720
     tcgaactaca acggatgcaa caagaacagc tagagcgtga gctgaaaatt caacagctgc       780
     tctatcaacg aagagtgcag caggaacaat ctcaggtgca acacccacat tcaacaccga       840
     ccaagcaaca gcaactagaa accagtggtg ttccattagc accattcgca gcttcgtcga       900
     aacaccaagc aaacgtcgcc agatatgcag caaggaacat ttttcaccca gaagaagaag       960
     ccaacctgga ctcgcaaggc aaccaccaac aatcggatca ccagaatgga acggcttccg      1020
     gtatcccaac gagaccgact gcgccaagtg gactaggtgc agcatacact acaaatcagc      1080
     agtacagaga tgtcgccaat gaagcattcc gtttccctca tgcacaggaa gcaagaagcc      1140
     cgagcaggtt cttccagaac agaacgcaga attcacaacc ggtttataag tggccttttg      1200
     agtatgccgg tcagccaaat accatcctgc tgggtgaatt cctaaacatg gtaacaacat      1260
     acgctataac ggaaggagtt gatgaaacaa cactgctgag ggccatcaaa cacctattga      1320
     aaggcagtgc ccttcaatgg tatactcgct gctacatgca cctgcgtgac tggagcgact      1380
     tcaaactgga aataaagaga gagttcttgc caccgaatta ctcagagatc gtgaagcagg      1440
     atctctacct ccggtttcaa gaaccgaacg agccattcgc caacttctat cgggacttag      1500
     ttgccgcatt tgaaatcgtg gagccaccgt tgcccgagtc ggagaaattg tttatattaa      1560
     aatcccatct caacgccgaa ttcacgccga ttgcttcagc cgctcgagtc tcaacagtaa      1620
     aggaactggt agcagtgtgc cgagacttcg cagtatcccg atcctactgc atgcgcaata      1680
     gaaatctggc accaccacga atccaacgtt caatcggcca actcgtccga gcaacacaaa      1740
     ccaaccattc acaagacaac aagtgaacgc gatgtcaaga gatctaaaag aacagatcga      1800
     agaggtgcat cctgctgcca ttctggagca agaagaagca cgacaacagc tggctattga      1860
     atgggaagag gcaacgacag aatcggagga agtgaacgcc atccgaatgc aaggaacgtg      1920
     gcccagaaat catgaagcac cgcaagaagc acagaacttc ggcactcgat caatacgaac      1980
     ggcatcagtc acatgttggc agtgcggtaa ccaagggcac acatatccca cgtgtcccaa      2040
     cccaaagaca tacgtattct gctacagttg tggcaataaa ggagctacca cgcgaaactg      2100
     tcagacctgt gcctctagga tgacgcagct ggcagcggca aaccaacgtt cccagccggg      2160
     aaaccagtaa tgggagagtc atctaaaaga ggaactgatt ctcccatatg ctccacaatt      2220
     cctcatctag cagacatccc cgcatttcga aaagtaattg ccaccatcat aaacccaaac      2280
     acaacagata atagaccata cgcagaaatt acggtactag gacggccaat gaagggcttg      2340
     ttggacagcg gtgccacctg tagcgtcatt ggtggcagtc tcacaaacct agcaaaggaa      2400
     ctgggactca aaaagttccc ggtacaaggc actgtaatca cagcggacaa tactcgacac      2460
     aatgccagct tctacgtaca tctacccata gaatacaaca acagaaagcg atcacttcca      2520
     atattgtgcg ttcaaacact gccagatatc gtaatccttg gagtagactt ctggaatagc      2580
     ttcggagtga gcatcaacgt ctgtggtttg caagtagact gcgatgtaga tctgaacaag      2640
     ctaaaatcac tgacggaaga agaacagcgg caacttaaac aaacgattga ctccttttca      2700
     acctcggaga acattggtaa acttgggcga acgaacatct acgaacatca gatagacacc      2760
     ggcgcagcgg ctccggtcaa gcagcgatac tatccggtat cccgctttct gctgacggac      2820
     ataaataagg aagtggaccg gatgatcagc atggacgtga ttgaagatac tagctgttgt      2880
     ccatggaata acccgattgt cgcagtgaag aagaaggatg gaagcatgag actctgttta      2940
     gatgctcgca aattgaacac cattgtggtt ccggaagcct atccaactcc ccacatcgag      3000
     tcgatcatga acaacctggg aggatccaaa tatttgtcct cgatcgactt ggaagctgca      3060
     ttttggcaaa tcccgctagc gaaaaaggat cgcccgaaaa ccgcgttcac gatacctcag      3120
     agaggccact accaattcaa ggtagtgcct tttggtttgt ccaccgccag ccaagccctg      3180
     tcacgggtca tgaactactt gttcatcgac atggaaccgc aggtcttcgt ctacctcgac      3240
     gatctggtga tcgccacaga ctccttcgct gaacatctaa gagtcctaag ggaagtagcc      3300
     agacgtttga ggattgcagg cctcacaatt aacgtgacga agtccacatt ttgcaaacgt      3360
     agcatcaaat atctgggctt cgtactggat gagaatggat ggaacgtcga tccagagaaa      3420
     accgacacag ttaaaaactt cccaaccccg aagacaaaaa aggaagttca gcggttccta      3480
     ggaatggcgg gatggtacag gcgtttcatc gagaacttct caaaaattgc agcccccttg      3540
     acggagcaaa ccaaagcgaa ggtgcgcttc aagtggacgg acgagtgcga gaaagccttc      3600
     cagttactaa aacaacggtt gtgcaccgcg ccagtactag caacacccga ctattcaaag      3660
     tcattcgcaa tagcatgtga tgcctccgat ctggcaatag gggcagtgct cacccaggaa      3720
     catgacggac acgaaagagc gatcgcgtat atgtcccaaa agttacaatc ggcggagaaa      3780
     aagtattctg taacggaaaa ggagtgcctg gccgtcatac gcgccattga aaagttcaga      3840
     ggatacgtgg aaggcaccca tttcgtcgta tactgcgatc actctagctt gtcctatctc      3900
     aaatcgatga agaatccaac tccccgacta gcgaggtgga tcttaaggct caacgcgttc      3960
     acatttgata taaaataccg aaaaggggca aaaaacgtcg ttccggattg cctcagtagg      4020
     atcggtgaag tgaatgctat catagattcg agagaagggc cagacctatg gtatagggag      4080
     ttgcagaagt cggttgaagc agacccggac aagtatccgg atttcaagcg acaaggagga      4140
     gatctgttca agaattgtgc agtgaaagat gaaacaggtg ttcaagcatt ccgttggaag      4200
     aaagttgtcc cggcaggact acggaatgaa attatacgaa ggtttcacga cataccaaca      4260
     gctgctcatc ttggatttga ccggacgctg caaaagatcc agatagatca ctactggcca      4320
     aaaatggcca tggatgttcg acggcacgtg aaggcttgcg cggtatgtaa ggcatgcaaa      4380
     gcacccaatg taccgttgac accggccatg ggaggtgcga aaccagccaa acttccatgg      4440
     gagatgttgt ccatcgactg ggtcggacct atgatccgat cgcgagcagg aaatacagta      4500
     ctccttgtca ttaccgattg ggtaaccaaa tacgtcatcg cggaggcatt caggtcagca      4560
     agcgcggcac agatggtaga cttcctagaa cgtaacgtgt tcctacgctt ctcagttcca      4620
     cgaatcgtac ttaccgataa cggagcacag tttctctccc aagcattcca gagcctactg      4680
     accagatacg gaattcaaca catgcgaact gcgttctatt caccgatgtg caacaatgcg      4740
     gagcgggtga atcgaaccct tattacctgt gtccgtacct tggtggaaga tgatcaccgg      4800
     aggtgggacg aacaccttca acagattgtg tctgctataa actctgcaaa acacgaaacc      4860
     ttggggtgca gtcctcactt tgccaatttt ggcagagaat tggtgttgtt tccggaccag      4920
     tacgtgcagc agaacctgaa ctgtgcggct gatgtgaaac aagagcagat agataggcta      4980
     cagcggctgg aaaatatcag gcgattcatt ggatcgcgca tcaacaaggc ccacgagaag      5040
     agcaagcaac ggtacgattt gcggacaaga aacaggacat ttgccgtggg agatcttgta      5100
     tggagacgct cgttcaagct gtcgtcggca atggatgaga aaacgaagaa actcggccac      5160
     aaattcgtac cggcgttcgt caaggaaatc cgtggccaga acatgtacct cctagaagat      5220
     gtgaaaacag gttccacggg agtctaccac accaaagata tcaaggacga ttaagtccat      5280
     cgatttccag ctatgtacgc aacactctat gctgccgaca atgagccaaa tcggccacac      5340
     aattcggtga acggatcgag cttgaggccc aaaacatcga ttaatgaaac ctcgccgtcc      5400
     aaaactcatc gtctattata accacgaatc tccggaagaa cctgtagtgt cgtgcaaaca      5460
     acgaaactca cgcatagccg ccaggaaaac cggcaaaggt acacaacatc cagctatgtc      5520
     cacagttctc gaaaactgtc aactacgagc atatttgcca tccgaaatac gcacagcgga      5580
     actggcttga ggacctacaa catttgccga aacctcgcct tccaaaacca tgtccactca      5640
     ggcaaaacac aggaacccgt gagcgcttcc gacagcggat ctccgggtac cgaacacaga      5700
     aacgcttaca acgcaacatc catagcagga cgccgtagat agacgagcac atcagctgat      5760
     gtgataggtg accccaggag catgattccg tgcgttaacg caaacaagca acatcgcagc      5820
     gctgtaaacg tatagaaggt ccaaggacgg cggcatactg aatcaccaag aagctgactg      5880
     ttgtatggcg atgtgctcgt gttacagcag aagtaaacga caatagtgtt caacaacggc      5940
     ttatctttct ccagtgggac cgcctttgac acgctccttt cgaggaggaa gatgatagct      6000
     gaccgttcaa ccatggagac tcatgagcat cgcttcttct cgtacaacag acagccatgc      6060
     aattgcagaa tcctcctttc gctatcagta cccaatgttc cagtaccgtt cgtcattcca      6120
     tcaagcgaca aagatacaat gctatgaatc atccagctat gaaagcagac aacgaagctg      6180
     caaaccagga gtattccaat tcaagaaaaa acgcaaagcg gtcaaacatt cccatcacgc      6240
     gctaatagtt agtcatccat gatcctgcta tacttcaaca tcgaacgtac atgtcgtcca      6300
     gcaaagcagc gacaacactc acacacagaa cacacgactc actcagcgca cccgcgctct      6360
     cgaagaattc aaggcaaaga tgcaaagcgt cgtcgaacat actggcaaca cgtcaacaaa      6420
     caaaaggtga atatcgctct gtctgtttta gtaaactaga agatgtgtta atgacacaag      6480
     aaaatgtttg tattttctcg acatgaccca gtaggcttag atacttagcg ctcaagtatc      6540
     gggtatcttt gtttggtttt ggagaccaca atgtgtaaca gtagatataa gagctgtagc      6600
     tactaaggat tctggcatag tagatctatg tgataacagt tactgttgat tgcacttctg      6660
     tcactagcaa ttagtgaggg caatgtgtct taccgcaact accgtagtac taataagcat      6720
     ctacagactc ggtgtacata atgtagtatg atttaccgat cagtattatg tgtataagta      6780
     gaataaggtc tattgagctc ctcagaacta ataaaacggc atccttcgaa atttttgtga      6840
     agcacgcgca gcttcacaaa aatttcgatt cgctaaaagt ggtactg                    6887
//
ID   Gypsy-379_AA-LTR repbase;    DNA;    INV; 1518 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-379_;
KW   Gypsy-379_AA-I; Gypsy-379_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1518
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1518
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 134-134 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1518 BP; 411 A; 405 C; 341 G; 361 T; 0 other;
     tgttacgggt catgtcgacc aaaataaaat gtgtaaattt atgtaatcac ctatcgttaa        60
     ttatgtgtgt agccataaaa tatatatgcc tatgcaaagt tagccctcca tctcctgctg       120
     acagctgtca atgtcaatcc gctcgcacac acatcagcac acgcacagtt tccggtagga       180
     ctccacttcg ctcggaacgg aaagaacaac cagcctctcc gtgccaatat cagtgaacat       240
     tccttcgcga tacaagtcgc cggtcgtaca aaacccggat agtactgtgg caaaaagctt       300
     gcgacccaaa ccatccacca gcagcaccac gaaggaactt tttacatcac cagcgacgga       360
     tcaagcggta aaatcatgca tttccatccc atataacaca taaccacgaa gccactattc       420
     cagcccaatt ctggcgtgca tgcatgatct gccggtacgc tgaatgaaca aaaccccgtg       480
     cggaaccgag ctttcccgga gaagtatgga ccatctttcc ggcagtgact tatcggcaat       540
     ttctaaccct acacgtgctt tcagggctct ttgtttgagg ggtttcgcca gcacttctca       600
     cgcacctaac cacattgatc cggagcttgt catcgaccgg gcgaaggcgc aacatccagt       660
     ccgggcgaag gcgcctgatc agtcctccaa acaccttctg gcctagcact ctttggtcta       720
     cccgatgaga gacgagcctt catattgaag tacgcgcttc acggattttg ggactcaagg       780
     caagacacta aagctctgcg atcattttag ggctcgcttt atgggattaa cttccaccaa       840
     gatcatcgct ggtgcaggta ggattgacgc agcttcccga ttatagccag ctcgccgagg       900
     acagcgtgcg aactcccgag acttcctacg tgcgatactg aagaagcgcc gttcccagaa       960
     gaagttggtc caccaactga tcgacccgct gagcattgcc aacacctgac gagagaacca      1020
     acgtgtcgcc aacatcgatg gtcatgctga cggccgtcgc ataacaaaga aagaacagcg      1080
     agtatgtgtg tgcgtgcatg cggaggtgtg tacagtttgc gtgcctgggt ctagggatga      1140
     cctggacgcg tttagacagc gccttcgaac tacaagagcg ccatcgaatc accgttgcag      1200
     atcggggccc cgcaacaagt aaaccaacgg caacaatagt tgcagccagg ttagattaga      1260
     gtaggctagt tttaagataa accaaaatgt ttatggccaa ttatatcatg ctaccactag      1320
     tctcttccac ttatgtttaa tactgctcgc gtgtgacatt gactgagcga cattgctcat      1380
     aaacctaata ttttgctagc cggtttagac tgtgaatgat tgagctgtcg accactcaat      1440
     gcactacagt cgagtcttta tgaagcgata tcagccaaat accttttgat tttgccagca      1500
     aatataagct gactgtta                                                    1518
//
ID   Gypsy-37B_DWil-LTR repbase;    DNA;    INV; 2315 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37B_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2315
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1852-1852 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~86% identical to
CC   Gypsy-37_DWil-LTR.
XX
SQ   Sequence 2315 BP; 727 A; 415 C; 383 G; 790 T; 0 other;
     tgtaacgggt aacgtatagt tgtggctggt catgcagtag ctggatatcg gctggcacgc        60
     tgtaaatttc cggcactagc tcgtcgacaa gggggtgtag ttctgccgaa acccagttac       120
     cacaattaat tatatttcgc cgacctgcct gcttttctca ttgctatatt attaaaagtg       180
     agcgtgcatg cgacaagaga gagagaatac aaaaaaaatc aaagatagaa aaaaaagata       240
     gaaaagaaat atagaaacaa aagatggaat tccctacgct gataatgcaa gatgcatttt       300
     tacagtcgca atcactggtg gatttgtgat tgacctttgc ccacccttcc tatgatcatc       360
     ggccgcttga agcttcagct tcagatgatc cctttttctt tactggggag acatgtgtag       420
     atggatgaat tcaacgataa attttaaaca gacattataa aattttatta attatctaag       480
     agaaaaaaaa tttagattat taatcatact taaagttata aaaaaaaaat gatcgctctt       540
     acaaatagac gaaaaaaaaa tatcatcaaa atttattaac aaaacagaac gtcggcaaga       600
     agtgccgcta tttcagctaa agtatctcaa aaataaaaaa aaacaagaat tagcgctagc       660
     aacagctgta gactaggcgc acagacaatt tagcaatgtg gctaagccaa gaaagaacat       720
     acaaaaaaaa acgatttgcc cacgcataat aacgggaaat ctctttgctt gttgttggag       780
     tttttttttt tctttgtttt gctttatgtt gggaatatta ttttattgat tttaacgaaa       840
     aagggcaggt gcaaggggtg aagaatattt ttgtacataa acaaataatg tgtgcatatt       900
     acttacagct tcattctcca acgtcgaaag cgctttctcc gtattgctgt tgttaaggaa       960
     agtaaagaaa gataaaaaaa atattctaac accgaatatg cataccctgt aattttatat      1020
     tgatcctaac catgtatgta aataagtgat tttagttgtt gttttttttt cttttttttt      1080
     ttgtatggtt tttttttctt tctgctgact ttgccgtttg cctttacctt tccatagttc      1140
     caaaatttaa ttaattttac ttatatttaa ttattatatt taaccattcg acacgaaaaa      1200
     aaacactaac aaaaaaaatt aatttatagt tttttttcta tacctaatcc tagcttaact      1260
     aaaaaaaatc ggcatcctat gtatgcattc gggcgagggc tcagtggtcg cccttcaaag      1320
     ttcttttctt ttctgtgttt ttctgtactt gggctttctt atttttgttc ttctttagat      1380
     aaaattttta gatgcagata cttagttatt tcgctctatc agctgatagt tatttctcgt      1440
     atatttgtat gttgttatgc gtctttttgg ggtgattgtc cgtttagcgc tttcgggaat      1500
     gtgaataatg gtacggtggc cgccagtgca agtatttatt gctttcgtta tgctaataga      1560
     aaaaaaatta agtgtttgct aaattctatg cgcatagtaa aacacaatca taaggacaga      1620
     cacctatttc tatagttata tttttttctc tgatttctca ccttatgtga ctcgggtatc      1680
     gccttgacaa ataaaatatg gtccgccctc ttggggactt ggcccaaatg tatatcttta      1740
     aactttttaa gcactttgaa ggaaaatttt ttttcttttt tcaactaaaa tatatgtaat      1800
     tcttttgaag caattatgta tcaattattt ataaatttaa aaattttctt gactttgtta      1860
     attatttttt tctatcactt gaccacttaa cacatctcac tttgcataag tacaaatttg      1920
     caatgactcc tacgggttgc tccaagaact tagaaaccta ttcaaacaga cgcttggtgt      1980
     atccacctcg ccgccatcct gaattctcta aaacggtcct atagacacgg ctgcctttct      2040
     ctttttctcc cattagaaag cattccctta gcaacaggag aatatttatt acttcatttg      2100
     catagataaa gtgagttttc ttatctctca cccacagaag ctgctcaaga gaggctgcaa      2160
     gcgctgaccc gaagatacgt ggttggccac atacgatcat aacatacgtt cctaacatac      2220
     gagcataaca tacgatccta acatacgata cccgctaaca ttgcaacatt gcattgttta      2280
     aatgttgcca atctctagca acaagcgcct ttaca                                 2315
//
ID   Gypsy-37_AA-I repbase;    DNA;    INV; 4983 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_AA_;
KW   Gypsy-37_AA-LTR; Gypsy-37_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4983
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 2719232 2724214.
XX
CC   Positions [2309-2809] - Reverse transcriptase
CC   Positions [4001-4468] - Integrase core
CC   'GTTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           409..1539
FT                 /product="Gypsy-37_AA-I_1p"
FT                 /translation="MKAELERTRLENEELNRMLEDKEQDQNEFCEARSSTM
FT                 RESQTAANETLLSTMNNMSLSTLNIPECVPTAGEAELNKRDYDHWKNVLDA
FT                 SMHLIQATDESTKIYLFRIKAGSLLLELLDGTTTQQGMPDEKQLPYSNAIA
FT                 RLDAHFGSRAYMLSQRSKLANMVQRSGELNVQYVKRVAAAAKLCSYKSDEE
FT                 FEAISRTVTRGSTDSRVRTLAYRVLIDGGSLNELIDQVRIREVELENENDY
FT                 RRLHQQQSATVAAVSYHPGDHVQRQRGSFDASRGYNGGRGRRNFSRGPMRN
FT                 QRRGRSCWRCLSMYHAAEDCFHTDKVCRNCNRRGHIARACSIQVKQEPRKR
FT                 NWTGEEPEPPTKIAMIQKTEDVEEDSKVNDTSNV"
FT   CDS           join(1634..3496,3500..4960)
FT                 /product="Gypsy-37_AA-I_2p"
FT                 /translation="MQQKIMFENNGELLQVTQNIQRDQGTSAIDRVVSNVP
FT                 DEKAAHVTAYVAGIKVPFFIDSGAQVNTITSESFNAILQNETSKKSLHELQ
FT                 YGSDKVLRAYATQGKIDVIATFSAELFVSDERPTTVEKFYVVRESRALLGF
FT                 NTAVRYSLLAVGIDVPVVEMDSEWRCEFSIRHLHAVSSREFPKFNVPPVKL
FT                 SYDKSMPPSRNVYTHIPAAFKDLTKQKLNELLESGIIEKVTKDMDRSFCSS
FT                 LLVIPKAKSDIRLVVDLRGPNKCIIRTPFRMPTFESILLQLHGAQYFSTID
FT                 LKNAFFHIELEENSRHLTNFFAGEALYRCCRLPFGLTNAPDIFQEVMQTVI
FT                 LEDCEGTVNYLDDVMIFGRTKEEHDRNLQNVLKRLQEHNVMINQEKCSFGK
FT                 EIVTFLGFRVSNEGWQIEDEKISAIKDARKPESTAEVKSFLGLVTFIDRFI
FT                 PQRADKTLHLRQLSNAHDFYWNQDLEDEFEYLRSSSWKHIKTLGYYSRDDE
FT                 TELYVDASPHGLGAVLVQYDAKSKPRIISCASKALTVAEKKYPQTQKEALA
FT                 MVWAVERFSVYLLNISFTIRTDAESNEFIFGGSHRIGKRAVSRAEAWALRL
FT                 QPYNFKVRTFAFTVKIIVKLYFMVVRVPGEMNIADALSRLVKESQSLESFD
FT                 DSNEKHLLYFLDTGTVEFTWEDIEIEAEKDAELNRVREAIRDNRWDKSLKR
FT                 YEAEAKNLRVLGGLVFMNDRVILPYALRDGALNSAHQGHMGAASMKKILRN
FT                 YFWWPCMSKEVERFVEGCETCFRLSRKNPPIPLTCRELPEGPWEILQIDFF
FT                 SFKDCGSGEFLVVVDTYSRYLHVIEMKNTDADSTNAALCKVFEVWGYPIAI
FT                 HSDNGPPFQGDKFVKTWENRGVKIRKSIPLSAQSNGAVERQNKGLKDALTA
FT                 AKLDNVNWKKALEQYLHMHNKVRPLSRLGVTPFELLVGWRFRGTFPYLWEN
FT                 LPSEQIDRTDIREKDAVTKLDSKQYADLIRGAKESEIAVGDRVLLAQNTRQ
FT                 KGEPMFSEDRFTVLTREGAKVVVQSDRGVQYSRNVQDIKKVPIMLRETGDE
FT                 ESTDGGEHPAEAELPDVPIVPSESEISVEKPKRLRKKPSRFNDMILFYVYD
FT                 "
XX
SQ   Sequence 4983 BP; 1557 A; 965 C; 1228 G; 1233 T; 0 other;
     atggcgcagc cggtagcgaa gtcgacccgg aggaaaatgt gataaggtga gtaaaagtag        60
     aagcagttag tgaatagtag gaatctgatc ccgaagatta ttgaaataaa tggacctcga       120
     ttggaaaggc gagtgtctat atttgacccc gattggaaag gcgggtgtta tgaattcaga       180
     ccccgatagg aaaggcgggt gtcataaatc tggactccga ttggaaagac gggtgtcatg       240
     aattaattag accttggaac atgatcgaaa atggagatca agtagaaaaa aattattctc       300
     gtgcgaagtg ttgatttata gcatgaatct aaggagagtg ttgtttcatt ctacaggatt       360
     accagacgga aaattacgaa aaagcacttg gctgacgaat tatccagaat gaaagcagaa       420
     ctggagagaa cacggctgga gaacgaggaa ctgaatcgaa tgttggaaga taaagaacaa       480
     gatcagaacg aattctgtga agcgagatcg agtacgatgc gtgaaagcca gactgccgca       540
     aatgagacct tgctcagtac gatgaacaat atgtccttga gcaccctcaa cattcccgag       600
     tgtgtaccaa cagcgggcga agcagagttg aacaagcgag attacgacca ttggaaaaac       660
     gttttggatg catccatgca tctaatccaa gctactgacg aatcgacgaa aatctatctg       720
     ttccgcatca aagctggatc gttgttgctt gaactactcg atggtaccac aactcagcaa       780
     ggaatgcctg acgaaaagca gttgccctac tcaaacgcaa ttgcacggtt ggatgctcac       840
     tttggttcca gagcctacat gctatcacag cggagcaaat tggcaaatat ggtacaacgg       900
     agcggagagc tgaacgtcca atacgtgaaa agggtggcag cagcggcaaa actgtgttct       960
     tacaaatctg atgaagaatt cgaagctatt tcgcgaactg tgacaagagg atctaccgat      1020
     agtcgggtga gaacactcgc ctacagagtc ctaatcgatg gaggttcttt gaacgagttg      1080
     attgaccaag tacgcatccg agaagttgaa ctggagaacg aaaatgacta ccgtagacta      1140
     caccagcagc agtccgctac tgtggcagcc gtttcgtatc atccgggcga ccatgttcag      1200
     cgacaacgtg gttcgtttga tgcatccaga ggatacaacg gtggacgtgg tagaagaaat      1260
     ttttcccgtg gtcccatgcg aaaccaacgg cgtggcagat cgtgctggag gtgtttgagt      1320
     atgtaccatg cagccgaaga ttgtttccat accgataaag tatgtcgtaa ttgcaatcgc      1380
     cgaggacaca ttgctcgagc ttgctcgatt caagtcaaac aggaaccgcg taaacgaaac      1440
     tggacgggag aagaaccaga gccaccgacg aagattgcga tgatccagaa aacggaagat      1500
     gttgaagaag actcgaaggt aaacgataca agtaatgttt aagattttga agttgagttt      1560
     tattttatgt ttgcttttga attcactgat taaaactgat ttataaatga ctgaatttct      1620
     gaaataaacc caaatgcaac agaaaataat gtttgaaaat aatggtgaac tattacaggt      1680
     gacacaaaat atacaacgag atcaaggaac gtcggccatt gacagagtcg tatctaatgt      1740
     cccagatgaa aaagcggctc atgtcacggc atatgtggct gggataaagg ttccattttt      1800
     tattgactct ggtgcacagg tcaatacaat cacatcggaa tcgttcaatg ctattcttca      1860
     gaatgaaaca tccaagaaga gcttgcacga gctacaatac ggatctgata aagtcctgcg      1920
     cgcatatgca acccagggaa agattgacgt gatagcgact ttttcggcag agctttttgt      1980
     ttcggacgaa aggccaacga cagttgaaaa attttacgtt gtacgtgaat cgagggcact      2040
     tcttggattc aacactgccg tccgctatag tttgctggca gtgggtatag acgttccagt      2100
     agtcgaaatg gattctgaat ggcgatgtga attttctata cgacacctgc acgcagtttc      2160
     ctcccgggaa ttcccgaagt tcaacgttcc tccagttaag ctgagctatg ataaatcgat      2220
     gcctccttcg agaaacgtct atacgcacat tccggcagcc ttcaaagatt tgacgaagca      2280
     aaagttgaat gagctgctag aaagtggtat tattgaaaag gtgacgaaag atatggatag      2340
     aagcttttgt tcttccttgc tagtgatacc gaaagcaaaa tcagatattc gcctcgttgt      2400
     cgatttacgc ggccccaaca aatgtatcat cagaacacct ttcagaatgc caacattcga      2460
     gtcaatattg ttgcagttgc acggtgcgca atatttttcc acgattgatt taaagaacgc      2520
     cttcttccac attgagctcg aggagaattc aaggcatctc acgaactttt ttgctggaga      2580
     agcactttac agatgttgtc gacttccgtt tgggcttaca aacgccccgg atatattcca      2640
     ggaggttatg caaaccgtaa ttctggagga ttgcgaaggg actgtgaact atctggatga      2700
     tgtaatgata ttcggacgga caaaagaaga gcacgatcgt aatcttcaaa acgtcttgaa      2760
     aaggcttcaa gaacataacg taatgattaa ccaagagaaa tgttctttcg gaaaggagat      2820
     agtgacgttc ttgggattcc gagtatctaa cgaaggttgg caaattgagg acgagaaaat      2880
     cagtgcaatt aaggatgcaa ggaagcctga atcaaccgcg gaggtgaaaa gttttttggg      2940
     ccttgttacg tttatcgacc ggttcattcc gcagagggct gataaaactc ttcatttgcg      3000
     acagctgtcc aatgcacacg atttttattg gaaccaggac ctggaagatg aatttgaata      3060
     cctgaggagc agttcttgga aacatatcaa gacactaggc tactatagtc gagacgacga      3120
     gaccgaacta tatgtggatg catcacctca tggactagga gccgttttgg tccaatatga      3180
     tgcaaaatct aagcctcgta tcatttcctg tgcttctaag gcgttgacgg tagcagaaaa      3240
     aaaatatccg caaacacaaa aggaagcttt ggccatggtc tgggccgttg aacggttttc      3300
     tgtatacctt ttgaacatca gctttacgat tcggaccgat gcagaatcaa acgaattcat      3360
     tttcggagga tcacatagaa tcggcaagag agctgtatca agagctgagg catgggcttt      3420
     aagactacag ccgtacaact ttaaggtacg tacatttgca tttacagtaa agattattgt      3480
     taagttgtat ttcatgtagg ttgttcgtgt accaggagaa atgaacatag ctgacgcatt      3540
     atctcgcctt gtcaaagaat cacaatcact cgaatcgttt gatgattcca atgaaaagca      3600
     tcttttgtat ttcctggata ctgggacggt ggaattcact tgggaagata tcgagattga      3660
     agctgaaaaa gacgcagagc taaatcgtgt tcgagaagca atcagagaca atcgatggga      3720
     caaatctctc aagcgatatg aagcggaagc taagaatttg agagttcttg gaggtctggt      3780
     tttcatgaac gaccgagtga ttttaccgta cgctcttcgt gatggagcgc taaattccgc      3840
     ccaccaagga cacatgggtg cggcatcgat gaaaaagata ctcaggaact atttctggtg      3900
     gccatgcatg tccaaagagg tggaaagatt tgtagaaggt tgtgaaacct gtttccggct      3960
     atctaggaag aatccaccca tcccattgac ttgtcgtgaa ctccccgaag gtccgtggga      4020
     gattctccaa attgattttt tctcgttcaa ggactgtgga tcaggagaat ttcttgtcgt      4080
     agtagatacg tattcgcgat atctacacgt cattgaaatg aaaaacacag atgctgacag      4140
     cactaacgca gcgttgtgca aagtttttga agtttgggga tatcctattg caattcacag      4200
     cgacaatggc ccgccgtttc aaggcgacaa gtttgtcaaa acgtgggaaa accgaggcgt      4260
     gaaaataaga aaatcgatcc cattgagtgc tcagtcaaat ggagctgttg agcgtcaaaa      4320
     taaaggatta aaagacgctt tgaccgcggc taagcttgat aacgtgaact ggaaaaaggc      4380
     cctagaacag tatttgcata tgcataacaa ggtccggccg ttgtcgcgat tgggcgtcac      4440
     accatttgag ctacttgtag gttggagatt cagaggaaca tttccctatc tatgggaaaa      4500
     cctaccctcg gagcaaatcg atcggacaga tatacgcgaa aaagatgcgg taacaaaact      4560
     tgacagtaaa caatacgcgg atctgattag aggagccaaa gaatcggaaa ttgcggtagg      4620
     agatagggtt ctgctggctc aaaatacaag acagaaagga gaaccgatgt tctcagaaga      4680
     ccgtttcacc gttctaacaa gagaaggtgc aaaagttgtg gtacaaagcg atagaggtgt      4740
     acaatactca agaaatgtac aagatattaa gaaagtaccc atcatgctgc gcgagactgg      4800
     ggatgaagag tcgacagatg gaggagaaca tcctgctgaa gctgaattgc ctgatgttcc      4860
     aatagtaccg tcggaatcgg aaatatcagt cgaaaaacca aagcggttgc ggaagaaacc      4920
     ctctcgtttc aatgacatga ttttgtttta tgtatacgat tagagagtag agaagtagag      4980
     cat                                                                    4983
//
ID   Gypsy-37_AA-LTR repbase;    DNA;    INV; 839 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_AA_;
KW   Gypsy-37_AA-I; Gypsy-37_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-839
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 2718393 2719231.
XX
SQ   Sequence 839 BP; 265 A; 163 C; 184 G; 227 T; 0 other;
     tgtagaataa gagagcgatg caataaatag atatgaaaaa tgataaatta tgttgaaata        60
     cttttcctgg tgaaagaatc ataaatcatc ttgaattaga aaccctcatg aatatgcctt       120
     tactcgggaa cgaaaacggt caattatttc tccaatttgt ttcttcttca ttgcttcatt       180
     ttgcttgctt ctgattggtc gtaataactt gttttctgat tggccgatgt aactcgtttc       240
     ttattggttt tcgctgcttg tttctgattg gccgttgttc atccgccatg ctatataaag       300
     cgatggcatt gctcggtcaa gctcattcat cagtgtaacg ttgtgagtga cacatatcag       360
     cagcagcagt agcagagaac gggagaaaag cagagaaacc agtcggcgag aaaccagcag       420
     cagcggagcg gcgaaaagtg agctgagcca cacagtgaca cattgtcgga gcgagctggt       480
     ggcaaagcgg tacagtgagg catagcgata tagtgacgca cactgataca gtgagtattg       540
     cggtaaacta aacggccctt ttttagggcc acaagttatt aagagaaaat agttcaaaat       600
     gcaacagttc tttttagagc taccagttgt taagaaaaca atcctaaacg gccctttttc       660
     agggccacga gttattaaga gaaaccagtt cacaatgcaa cagttctttt tagagctaca       720
     agttgttaag aaaaaaaaaa aataaaaatc ctaaacggcc ctttttcagg gccacgatca       780
     agcggattca acagtagcgg ataccaaaag gagcctatcc accatttccg gttacgaca        839
//
ID   Gypsy-37_AnFu-I repbase;    DNA;    INV; 5038 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5038
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2921-2921 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           742..1677
FT                 /product="Gypsy-37_AnFu-I_1p"
FT                 /translation="MMHSPPNPGVTVVNPAASIATDTGMTAPGPLTIEPPF
FT                 SRDSSTDPPEFQVEIVNNMRLRPPELDTTDIHTFFYALENWFDAWNIAPSH
FT                 HVKRFNILKTQIPTRILPQLRHLLDNVPNTDRYEAAKRSIIQHFEESQRSR
FT                 LHRLLSDMNLGDRKPSQLLAEMRRTANGAMTDSSLVDLWIGRLPPYIQSAV
FT                 IAASPDVEDKVKVADSVLDSFNLYHRTGTYQQVSEVRKGEVDRLTKQVAEL
FT                 TQRLDAVLNQLNTGRNRTRSRSRAQPNQSTSIVANDLCYYHQRYGQQARNC
FT                 RAPCSFVSRQHRNNASSTSA"
FT   CDS           1681..5013
FT                 /product="Gypsy-37_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QLAGDVRQQPVHSISSTTHRLVIVDRKTNQPFLIDTG
FT                 ADVSVIPREHSGAVHKPSSMKLFAANRTPIAVYGESLRTLDLGLRRNFLWN
FT                 FVIADVGTAIIGADFLEYFHLLVDLRSRCLVDAFTNLRTPGVTNCNPEEPT
FT                 VKVCDSTSPIASLLKEFPGLTSPTTPGTQLQSDITHRIETSGHPIYARPRR
FT                 LSPEKYAAARAEFESLVKMGVCRPSNSSWASPLHMTRKADGTWRPCGDYRA
FT                 LNAKTVPDRYPLPFLQDFTMNLQGKTIFSKVDLHKAYHQIPIHPEDIPKTA
FT                 ITTPFGLFEYTTMPFGLRNAAQTFQRLIHDVLRGLDFVFPYIDDMIIASAT
FT                 LEEHHEHLRQLFQRLEQHHLAINPAKCEFNRTQIAFLGHLVNAKGIRPLPE
FT                 RVAAVTELNKPTTVMELKKFLAMVNYYRRFLPHALDTQDILLEMTPGNRKK
FT                 DKTPLTWTPQSTEAFTRCKEQLRQAALLAHPNPNAELSLWTDASDFAAGAV
FT                 LHQRVDDQLQPLGFFSKKFEKAQRNYSTYDRELAAIYLAVRHFRYQLEGRE
FT                 FRIYTDHKPLTYAFRQTHDNASPRRTRQLDFIAQFSTDIHHVSGEQNVTAD
FT                 LLSRIEVVRAMPTIDFELLADEQTCDPELIAILNRKMASDLFLQKTPIPGS
FT                 TKALYADCPGGIVRPYITKSFRKQLLHAVHDISHPGARATVRLMTERFVWA
FT                 DIKRETREFVRNCLACQRAKVGRHTKSPLTSYPTTQHRFSHINVDIIGPFP
FT                 VSNGNRYCLTIIDRFTRWPEAVPIPDITASTVTAALLYHWIARFGVPSIVT
FT                 TDQGRQFESSLFSELNRSLGTKHIRTTAYHPQANGLIERWHRTLKAAITCK
FT                 DTIRWSEHLPLILLGLRTTFKSDIQASPAELVYGTTLTIPAEFFSSEPQPV
FT                 LTNQSDFAKTLRDAMSKIRPPDTAWHTNRTAFVHHDLNKCTHVFVRNDTVR
FT                 PALTTPYHGPYKVLTRNFKSFQILLNGRPSLISVDRLKPAYTVDEIPPQPS
FT                 RETPPTDPIQPFPATQRPSAEQPLTSHGQAATAPELTLHNRTNTPSASPTQ
FT                 QPRAAHPLLAPLPQPPAPTATPTTPLSILRRRGNDISTGVTRSNRRVKIPL
FT                 RYR"
XX
SQ   Sequence 5038 BP; 1342 A; 1504 C; 1124 G; 1068 T; 0 other;
     actggtgacc ccgaatcctc agagtgtgaa atacgcctta gtgcatgtgt gtatggtgca        60
     aagaaaactc tacgcgcccg catacagtcc cgcgttcgaa cgagtgttca cgtccccgcg       120
     ctacccagtg ccgaaaacga tctaagtgca tcgcgtccgt gaattgcatc tgtagtaacg       180
     tccgtcgcga gtgcccgtgt gtcgtgtgaa cttttcgaca acgccttcga ttacggacgc       240
     taaaaaaagt gcagtagtgt ataccacgcg taacgccgac gagtgcttag agaacgtgta       300
     cgcactcgcc gcacgctacg cactccgcgc cgtggcaagt gaacgacaca gatacacaca       360
     cgcgtatcga catcgagtgg cgtgccgaca gggccgtcaa acccaaagca gaacgtcgtt       420
     cctttttctg ctgcgatcag cacgatattc ccacgttacc gacaagcata ccgtgtcccg       480
     tgatacgcat tttcacctaa cgtgcgcact atcgtcgccg tagccgagta caggaatccg       540
     ccattatttg ccccacgtgt cgccgccatc ttcccctcgt gcaacagcca tcgcagccgg       600
     accagtgctg aagttcccgg acgaggctaa cgacctaaga cgccgccatc ttccgctcgt       660
     gtaaccgcca tcgctacaaa aacgccttca tcacacattt aaggtaagat ccatcctttt       720
     tcttactact aaccaacgag gatgatgcat agcccgccga atcctggggt tacagtggta       780
     aaccccgccg cgtcgatagc cactgatacc ggaatgacag cccctggccc actaacaatc       840
     gaaccacctt tctcgcgcga ttcctctacc gacccgccgg aatttcaagt ggagatcgtt       900
     aacaacatgc gcctcagacc acccgaattg gacacaaccg acatccatac ctttttctac       960
     gcgttggaaa attggtttga cgcatggaat attgcgccga gccaccacgt caagcggttc      1020
     aatattctaa aaacacaaat cccgacgcga atcctacctc agctgcgcca tcttctcgat      1080
     aacgtgccta acactgaccg ctacgaagcc gcgaaaaggt caattattca acatttcgag      1140
     gagtctcagc gtagccgttt gcaccgattg ttgtccgata tgaaccttgg cgaccggaaa      1200
     ccgtctcaat tgttagccga aatgcgacgc acagcaaacg gggcgatgac ggactctagc      1260
     ttggtcgatc tctggatagg acgtttgccg ccatacattc aatccgcggt aatcgccgct      1320
     tcgccagacg tggaagacaa ggtaaaggtg gccgattctg tcctggattc gttcaatttg      1380
     taccaccgga cgggaacata tcaacaggtg tcagaggttc gaaagggaga ggtggaccgc      1440
     ctcacgaaac aagtagctga attgacgcag cgtttagacg ccgtcctgaa tcagttaaat      1500
     acagggcgca accgaacgcg atcacgatcc cgcgcacagc ctaaccagtc caccagtatc      1560
     gtcgctaacg acttgtgcta ctatcaccag cgttacggtc aacaggcacg taactgccga      1620
     gcaccttgct catttgttag ccgtcagcat cgtaacaacg catcttcgac gtctgcgtga      1680
     cagctcgcgg gagatgttcg gcaacaacca gtccactcta tatcatcgac aacccatcgc      1740
     ctcgtcatag tagaccgcaa aacgaaccaa ccatttttga tagatactgg cgccgacgtc      1800
     tccgtaattc cacgagagca tagtggtgct gtccataaac cgtcgtccat gaagcttttc      1860
     gccgctaaca ggacgccaat cgcggtatac ggtgagtcgc ttcggacttt agacctgggt      1920
     ttgcgacgaa atttcctgtg gaattttgtg atcgccgacg tgggcacggc cattatcggg      1980
     gccgattttc tcgaatattt tcatctgcta gtcgaccttc gcagtagatg cctggtagac      2040
     gccttcacta accttcgtac gcccggtgtc acaaactgta atccagagga accaaccgta      2100
     aaggtttgcg attcaacgtc accgatagct tccttattaa aggaattccc tgggttaacc      2160
     tcgcctacca cccctggtac ccaactgcaa tccgacataa cacatcgcat agaaacatca      2220
     ggacatccga tctacgctcg tcctcgtaga ttgtcccccg aaaaatacgc agccgctcgt      2280
     gccgaatttg agtcgttggt aaaaatggga gtttgtcggc cttccaacag tagctgggcc      2340
     agccccttac acatgactag aaaagcagat ggaacgtggc gaccttgcgg cgactacaga      2400
     gccctcaacg cgaagactgt accagaccgt tatcctttac cttttctcca agattttacg      2460
     atgaatttgc agggcaagac catcttttca aaggttgacc tgcacaaggc ttaccaccaa      2520
     atcccgatcc acccggaaga catcccaaaa accgccatca cgactccatt cgggctgttt      2580
     gagtacacta cgatgccatt cggcctgaga aacgcggcac aaacatttca acggctcatc      2640
     cacgatgttc ttcgaggact cgacttcgtg ttcccgtaca ttgacgacat gatcatcgct      2700
     tcggcaacac tagaagaaca ccacgaacat ctgcgtcagt tattccaacg tctggaacaa      2760
     caccatttgg ctatcaaccc agccaaatgc gaattcaacc gaacccaaat cgccttttta      2820
     ggacacttgg tgaacgcaaa aggtatccgt cctctcccgg aacgcgtagc agctgtcacc      2880
     gagttaaata agcccacaac ggtaatggaa ctgaaaaagt ttctcgcaat ggttaactac      2940
     taccgccgct tcttaccaca cgccctagat acgcaagaca tattattgga gatgacgcct      3000
     ggaaatcgaa aaaaggacaa aacgccgctc acctggacac ctcagtcaac tgaagcattc      3060
     actcgctgca aggagcaact tcgacaagca gcattgctgg cacacccgaa cccgaacgca      3120
     gaactatcgc tttggacaga tgcttccgat tttgccgccg gagccgtttt gcatcaaaga      3180
     gtagacgacc aactccaacc actgggtttc ttttcgaaga aattcgaaaa ggctcagaga      3240
     aactactcga cctacgaccg tgagttggcg gctatatatc tcgccgtacg ccattttcga      3300
     taccagttag agggcaggga attccgtatt tatacggatc ataagccttt aacctacgcg      3360
     tttcggcaaa cgcacgataa tgcctcgccg cgaagaacta gacagctgga ctttatagcg      3420
     caattttcga ccgatataca ccacgtctct ggggagcaaa atgttacagc cgacttgctt      3480
     tcacgtatcg aagtggtgcg cgcgatgcca accatcgatt tcgaactttt agccgacgag      3540
     cagacttgcg accccgagct tatcgctata ctgaatcgga agatggcatc cgatctgttc      3600
     ctccaaaaga cgccgattcc cggaagtacc aaagcgctgt acgcggactg ccctggcgga      3660
     atagttcgac cgtatatcac caaatcattc cgcaaacagc tgctccacgc cgttcacgac      3720
     ataagtcatc ccggagcacg agccacagtt cgactgatga cagaacgttt tgtctgggcg      3780
     gacatcaaaa gggagacgcg cgagttcgta aggaactgtt tggcatgcca acgtgctaag      3840
     gtcggtcgtc ataccaaaag cccgctcacg tcgtacccga ccacgcagca caggttcagc      3900
     cacatcaatg tcgacataat cggccctttc ccagtaagta acggaaaccg atactgcctg      3960
     acaataatcg accgattcac ccgttggcca gaggcagtgc cgataccgga catcaccgca      4020
     tcaactgtga ccgcagcgtt gctgtaccat tggatcgccc gttttggagt tccatctata      4080
     gtgacaacgg accaaggtag acagttcgag tcatcgttgt tcagcgagtt gaatcgatcc      4140
     ctcggaacaa aacacatacg gacgacggcc taccacccgc aagcaaatgg gctaatcgag      4200
     agatggcacc gcactctcaa agcagcaatt acttgcaagg acacgattag gtggagtgaa      4260
     caccttccct taatactgct tggactgcgc acaactttta aaagcgacat ccaagcatca      4320
     ccggcggaac tggtgtatgg tacgactctc accattcctg ccgaattttt ctccagcgaa      4380
     ccacaaccag tattgacaaa tcaatccgat ttcgccaaaa cactacggga tgcgatgagc      4440
     aaaattcggc caccagacac cgcttggcac accaaccgaa cagccttcgt ccatcacgat      4500
     ctaaacaaat gcacccacgt atttgttcgc aacgacaccg tccgtcccgc tctaacaacc      4560
     ccgtatcacg gcccttacaa agtactgaca cgaaatttta agtcttttca gatattactc      4620
     aatggtcgac cctcgctaat atccgtcgac cgactcaaac cggcctacac agttgacgaa      4680
     atcccgcctc aaccgtctcg ggaaactcca ccgacggacc cgatacagcc gttcccggca      4740
     acccaacggc catcagctga gcaaccgcta acaagccacg gacaagcagc cacggcaccc      4800
     gaactgacgt tgcacaatag gacaaacacg cctagcgctt cgccgacaca gcagcctcgc      4860
     gccgcgcatc ctttgcttgc accgttgccc cagccaccgg caccgactgc tacaccaact      4920
     acaccactat ctatcctgcg acgaagagga aatgatatat cgaccggtgt taccagatcc      4980
     aaccgaagag tgaaaatacc gctgcgttac cgataacacc gctctaaggg gggaatac        5038
//
ID   Gypsy-37_AnFu-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-281
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2849-2849 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 281 BP; 80 A; 70 C; 71 G; 60 T; 0 other;
     tgtagcgacc aggacgccac ctggcgcaaa atataggtag caggattacg atccttgggg        60
     attaggagat agggacggca tgaaaaagat agaaaaggac agctaggggg tgcacgtgca       120
     ctgcgcgtat aaaagctttg gcatgctcag ccaagctctc tctctcgttt tcttgccacg       180
     ctaccacgct accacgctac cacgttcgta ccacatcgca ccgcgtgttg ccctgaggta       240
     acaaaatagg ttaggaataa acgcttgttc taaacactaa a                           281
//
ID   Gypsy-37_CQ-I repbase;    DNA;    INV; 5678 BP.
XX
AC   AAWU01034069;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_CQ_;
KW   Gypsy-37_CQ-LTR; Gypsy-37_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5678
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 453-453 (2011).
XX
DR   Genome; AAWU01034069; Positions   21700   16023.
XX
CC   Positions [2538-3077] - Reverse transcriptase
CC   Positions [3428-3781] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..1629
FT                 /product="Gypsy-37_CQ-I_1p"
FT                 /translation="MDAEQAALAAAAAAAAAAAAQAAQALAAEQAAAEAQR
FT                 TLEEAAHIVNSMKVPNAVDTIPEFTGNPIKLHSFIRSVENLLPFMRPCVNT
FT                 PFYNMWLQAIRRKIIDDADNVLELYGIGLDWEAIKEFLIMYYSDKRDNLTL
FT                 TRELYSLYQTGTIEDFYGKIQHTLSLLINHANVSIQDLNIRADRIGMYRQN
FT                 ALNVFLAGLKEPIGGNIRSRGPDNLKHAFDACMEELNFQRINNSRKFELPP
FT                 MPMQNYKFPKNYFTSNQVPNIPPKNYFALNQVPNVPPRNVFAPFNSKPNLP
FT                 KPEPMDVDRSLRSRNVNYINRPNNQRNHFVQGPQRFHVEELRNLEQDDNED
FT                 EDQVEASGSNEVFDETHNEVDDVNFHMGTTTNNQI"
FT   CDS           4111..5676
FT                 /product="Gypsy-37_CQ-I_2p"
FT                 /translation="MTTLAEIIITDLNRNDEFIAFKEYKTKIIRNLNLHLH
FT                 IVNVENIQSNIDIISHALNIFYKNNSTQNFHKVLERRVMKLSDNFKRLKPL
FT                 TPRHKRGLVNPIGTIIKSITGNLDNNDLYDINKQLDITKTKTNYLIESNNR
FT                 QIIINDRLQSKLNEITKHLNEQQIKILKEISIQINKKTIQSDYFCKQNLFE
FT                 LLFNIQFLDQEINDLVESVQLAKLGIICKNIISLNEMETFEKILTDQNITI
FT                 SSLDQIYEYLGLEVFHKNHSIIFVIKVPNFEPFEYDFINIELLPKNNSIIT
FT                 FDYKSVITNGTKSFVSQIPCYTIEKYKICNSKNLKDISEDKCISNALRGTP
FT                 ARCNFKEYQGGTQIDVVNDFTVILKDANYPTSIKSECNIKERSVTGTLLVS
FT                 YEGCDITINNTKFSGKSHVEHHKITMIPMIGISFKQEWFFKEHNISQIQIS
FT                 NINHIEKIEQQYTKLQYFTIGGFMLTLSCSIIIVLLWLITRKTKSAATVEN
FT                 NLESNDPVSASISQHSNKDSGRIFSK"
FT   CDS           1983..3500
FT                 /product="Gypsy-37_CQ-I_3p"
FT                 /translation="MYRKYPVIMCKTIPKQSILNIEIPVTEKSGDFFFEDF
FT                 EVLPKLIICSGLYKASENKAVITIRNDSKNDQQFALQNPMQIELNNFEIIS
FT                 SDEINHHEFQPERYRKLIDQLRLDHLNTEERKKLLEVINEYQDLFHVDNEP
FT                 LSATNGTTHVIRTSDDLPVYQKSYRYPYCHREEVSNQISKMLKEGIIRPSS
FT                 SPWNSPIWVVPKKIDASGQQKWRIVVDYRKVNAKTVDDKFPIPNISDILDK
FT                 LGRSHYFTTLDLTSGFHQIKMEPQDIIKTAFSTEDGHYEYTRMPFGLKNAP
FT                 ATFQRHMNVVLAGLIGKICFVYMDDIIVYSTSLEEHCVNLSKVFDALSAAN
FT                 LKIQLDKSEFLKKEVAFLGHVITDEGVKPNPDKIDAIQNWPVPKTEKQIKE
FT                 FLGTIGYYRKFIQDFSKITKPLTQCLRKGEQVEHTPQFIKSFEQCKQILSS
FT                 SSILQYPDFSKPFILTTDASKYALGAVLSQGPIGKDKPIAFASRTLNKSEE
FT                 NYFHFTVYRN"
XX
SQ   Sequence 5678 BP; 2197 A; 970 C; 903 G; 1608 T; 0 other;
     gtcggtagga tatgctgttc aattgctggt gaacgaatat catcaaagac agcatgaaga        60
     ccatccttat ttttatgtaa gtaatttcgt gagcctcaag tgaatattga gtgcatagaa       120
     ttccgttggg gactgttaaa ttgaagatta tcatgaattg ttaagaggca atcaattatt       180
     ccaagctcaa gtgaatattg agttaagtga actttaaagt gaactgttaa tggggacaaa       240
     ttattccgaa actcaaatga atattgagag aagtgaattt ttcgtgaact gttaacggga       300
     aacaacatta agttaagtga gttttgtgac aaacaaatct aattaatact caaatgaaca       360
     ttgggtacaa atcaagtaat tttttttaca atcaaataaa ctgttgatgt taagtgaaaa       420
     ataaaaggac tgtttcaaaa attaaaagga agagaagaaa ccgttaagtg attgaatttt       480
     ttttgaaaaa taaaaatgga tgctgagcaa gcagcacttg cagcagcagc agctgcagca       540
     gcagctgcag cagcccaagc tgctcaagca cttgcagctg aacaagctgc ggccgaagca       600
     caacgcacat tagaagaagc agcgcacatt gttaacagca tgaaagttcc gaatgctgtt       660
     gatacgattc cagaattcac cggtaatcca atcaaattac attcattcat aagaagcgta       720
     gaaaatttac tgccttttat gaggccttgt gttaacactc ctttttacaa catgtggtta       780
     caggcaatta gaagaaaaat aattgatgac gcggataatg ttttggaact atacgggatt       840
     gggcttgatt gggaagcaat caaagaattt ttaatcatgt actacagtga taaaagagat       900
     aaccttactc ttaccagaga attgtattcg ttgtatcaaa caggtacaat tgaagatttc       960
     tatggtaaaa ttcaacatac tttgtctttg ctaataaacc atgctaacgt ttcgatacaa      1020
     gatctcaata taagagcaga tcgaattggt atgtaccgtc aaaatgcatt gaacgttttt      1080
     ctagctggcc tcaaagaacc gataggagga aatattaggt ctcgcggacc cgataatctg      1140
     aaacatgcgt ttgatgcgtg catggaagaa ttaaatttcc aaagaataaa taattcacgc      1200
     aaatttgaat taccaccaat gcctatgcaa aactataaat ttccgaaaaa ttattttact      1260
     tcaaatcaag ttccaaatat tccaccgaaa aattatttcg ctttaaatca agtgccaaat      1320
     gttccaccga gaaatgtttt tgctccattt aactcaaaac caaatttacc aaaaccggag      1380
     cctatggatg ttgatcgttc tcttcgatca agaaatgtga attacatcaa tagacccaac      1440
     aatcaaagaa atcatttcgt acagggaccc caaagattcc atgttgagga attgagaaat      1500
     ttagaacaag atgacaacga ggatgaagat caagtagaag cttccggctc aaatgaagtc      1560
     tttgatgaaa cccataatga agtagacgat gtaaattttc atatgggaac tactacaaac      1620
     aaccaaattt gacatccaga aattatattc catacctcag acttccaact caagagggat      1680
     ttgatttgaa attgttaatt gatacgggat caaataaaaa ctatttgagt ccaaaaagag      1740
     tacgaaaagc atcaaagctt caaaaaccaa caattgtttc aaatatttcc ggaaaacatt      1800
     tgattaatga atacgttaat tttaatccat ttccttcatt aacgactaaa aaatttattt      1860
     tccatgtttt tgattttcat aaatattttg atggactcct tggatacgaa acacttcaag      1920
     acctcgatgc caaaattgat tcaaaactga atacgatcca aattctcaat caaacattta      1980
     aaatgtatag aaaatatcct gttattatgt gcaaaactat accaaaacaa tcaattttaa      2040
     acatagaaat cccagttact gaaaaatctg gtgacttttt ttttgaggat tttgaagttt      2100
     taccaaaatt aattatttgt tcaggtcttt acaaagcttc tgaaaataaa gccgttataa      2160
     ctatacggaa tgactctaaa aatgatcaac aatttgcttt gcaaaatccc atgcaaattg      2220
     aacttaataa ctttgaaatc atatcatcgg atgaaatcaa tcatcatgaa tttcaaccag      2280
     aacgatacag aaaacttatt gatcaactaa ggcttgacca tttaaacacc gaagaaagga      2340
     aaaaactttt agaggttatt aatgaatatc aagatttatt tcacgtcgat aatgaaccac      2400
     tatcagcaac aaacggaaca acacatgtta ttcgaacatc agatgattta ccagtatacc      2460
     aaaaatctta taggtatcca tattgtcatc gagaagaggt aagtaatcaa atatcaaaaa      2520
     tgctgaaaga aggtatcatt agaccttctt catctccgtg gaattcaccc atttgggtag      2580
     tacccaaaaa gatagatgct tcaggacaac aaaaatggcg cattgtggtt gactatagaa      2640
     aagtcaatgc caaaaccgtt gatgacaaat ttccgatacc gaacataagt gatatccttg      2700
     acaaattagg caggagtcac tatttcacga ccctagattt aacctccggg tttcatcaaa      2760
     ttaagatgga accacaagat atcatcaaaa ctgccttctc gactgaagac ggacattatg      2820
     agtatacaag gatgcctttt ggacttaaaa atgctccagc cacctttcaa cgtcacatga      2880
     atgtcgtttt agctggttta attggaaaaa tatgttttgt ttacatggac gacataatcg      2940
     tctatagcac aagccttgaa gaacattgtg ttaatttatc taaagttttt gatgctctca      3000
     gcgcagcgaa tctcaaaatt caattagaca aaagcgaatt tttaaaaaaa gaggttgcat      3060
     ttttaggtca cgtcataact gatgaaggtg tcaaacctaa cccggacaaa attgatgcta      3120
     ttcaaaattg gccagtacct aaaacagaaa aacaaattaa agaattttta ggtacaatag      3180
     ggtattacag aaagtttata caagatttta gtaaaattac taaacccctc acacaatgtt      3240
     tacggaaagg tgaacaagtt gaacataccc ctcaatttat aaaatccttt gaacaatgta      3300
     aacaaatttt gtcaagcagt agcattcttc aatatcctga tttttcaaaa ccatttatat      3360
     taactactga cgcatcaaaa tatgcgttag gtgcagtttt atcccagggg cctataggaa      3420
     aagataaacc tatagcattt gcgtcaagga ccttaaacaa aagcgaagaa aattattttc      3480
     actttacggt ataccgaaat taatcgtgag cgataacgaa ccatcgttaa aatccacaga      3540
     agttcgtgga atgctggcag atctcaacat tgaaacttat tacacaccat ctaataaaag      3600
     cgaggtgaat gggatcgttg aaaggtttca ttcaacctta tgtgaaatac tacgaacaaa      3660
     cgaagaaaaa tttgcgaatt tatcaatgaa ggaaaagtta agaatctctg tggcactata      3720
     caataataca atacattctt caaccaatct taaacctacc gaaattttct acggaattcg      3780
     ggatggagaa gagaggccta ctgaattgat tgatataatt gcggccagag ataaagttta      3840
     tgatgaagct atcatagcac taaaaaatac acaaaaaaag atttatctta ccataataaa      3900
     aacagagaac accaaccaaa tctcgaagaa tctgcgtccg tttacataga acgtcaaggc      3960
     gtcaaaagta aacataagga caaatttaat aaaacaaaag tagctcaaaa tctacgaaaa      4020
     accttcattg atgaaatcgg tagaaaacat cataaaacca aattaagacg ccaaagaaat      4080
     taacaaataa cttttatttc taggtgcgtg atgacaactt tagccgaaat catcatcacg      4140
     gatttgaaca gaaatgatga attcatcgcc ttcaaagaat ataaaacaaa aatcattcga      4200
     aatctaaatc tgcatttgca catagttaat gtagagaata ttcaaagcaa cattgatata      4260
     atttcacatg ctttgaacat tttttacaaa aacaattcaa ctcaaaattt tcataaggtt      4320
     ctagaaagaa gggtaatgaa gttatccgat aatttcaagc gccttaaacc actgacacca      4380
     agacacaaac gaggacttgt aaatccaata ggaaccatta ttaaatcaat aactggcaac      4440
     ttagacaaca atgacctata tgacattaac aaacaacttg atataacaaa aactaaaact      4500
     aactacttga ttgaaagcaa taatcgacaa ataataataa atgatagact tcaatcaaag      4560
     ttaaatgaaa taactaaaca cttgaatgag cagcaaatca aaattttaaa agaaatttca      4620
     attcaaatca ataaaaaaac aatccaatct gattactttt gcaaacaaaa cctcttcgaa      4680
     ctattattta acattcagtt tttggatcaa gaaatcaatg atttagtaga gtcagtgcag      4740
     ttagctaaat taggtatcat ttgcaagaat attatctctc taaatgaaat ggaaacattt      4800
     gaaaaaatat tgaccgatca aaacattaca attagtagtc ttgaccaaat ttatgaatat      4860
     ctcggtttag aagttttcca taaaaatcat tcaataatat ttgttattaa agttccaaat      4920
     tttgaaccat ttgaatacga cttcattaat attgagcttc tccctaaaaa taattcaata      4980
     ataacatttg attacaaaag tgttataaca aatggaacaa aatcttttgt gtcacaaata      5040
     ccatgttata ctattgagaa atacaaaatt tgtaattcaa aaaatctgaa agacataagc      5100
     gaagataaat gcatttcgaa cgcattgaga ggaaccccag cgcgatgcaa cttcaaggag      5160
     taccagggag gcacacagat tgacgttgtc aacgatttta cggtaatatt aaaggatgca      5220
     aattatccaa cttctattaa atcagagtgt aacatcaaag aacgctctgt tacgggaaca      5280
     ttattagtat catacgaagg ttgtgatatt accattaaca acaccaagtt tagtggtaaa      5340
     agtcatgttg aacaccataa aattacaatg attcctatga taggaatttc attcaaacaa      5400
     gaatggtttt tcaaagagca taacatttca cagattcaaa tctcgaatat aaaccatatc      5460
     gagaagatag aacaacaata cacaaaactc caatacttta ccataggagg ttttatgcta      5520
     acattatcat gtagcataat aatagtattg ttgtggttga ttacaagaaa gacaaaatca      5580
     gcagctactg tggaaaacaa ccttgaatcc aatgatcccg tttcagcatc cataagtcaa      5640
     cattcaaata aagattcggg ccgaatcttc tctaagga                              5678
//
ID   Gypsy-37_CQ-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   AAWU01034069;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_CQ_;
KW   Gypsy-37_CQ-I; Gypsy-37_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 454-454 (2011).
XX
DR   Genome; AAWU01034069; Positions   16022   15704.
XX
SQ   Sequence 319 BP; 98 A; 74 C; 72 G; 75 T; 0 other;
     tggagtagtt accaaaccat tcacgcggtt tcagctagaa accgcgaaca tcgaataatc        60
     acaacgtcag catgcgccgt gtgcagcggc acatcatatt acactgtaac cagaggacga       120
     cgacgacgtc tggagtgacg acgtctggcg aggattccag gaaagtggcg caacaacata       180
     gtttacgtag tgtctttcag attcaataaa gagagggaaa ttaattattc ccggtcagtc       240
     tgtgtagagc catcaaacca tcaatttaat ttttttaaaa agtaaccttc gaaagcccgg       300
     cggctaactc acgtttcca                                                    319
//
ID   Gypsy-37_DAn-I repbase;    DNA;    INV; 5949 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DAn_;
KW   Gypsy-37_DAn-LTR; Gypsy-37_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5949
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 307-307 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4636-5127] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           931..2307
FT                 /product="Gypsy-37_DAn-I_1p"
FT                 /translation="MPDPEENVAQKCPLCDSTLDVGKTYKTKCGHVFHQSC
FT                 IAGYAKSKTTCPTCSTVCFERSDTPAQNTRSNRGQMLDSTPSGSSGASALG
FT                 LAQKELIQNTVLDAVKSMQNELLTELSERMARLIEANLPTSFAAVEGSNPE
FT                 GALGRNSLGQIPLGSMDEPIGSNRETPRSNHSDLSQRPDKVGHILNSWKLR
FT                 FSGNPEGLSVDNFIYRVEALTRQTLEGNFSILSSNASLLFEGKAREFYWRY
FT                 HKNTQELRWDFLCTALRRQFRDARTDLDIREAIRDRKQREREGFDTFYDAI
FT                 EELMDHLDMPLTEMEVVEILKRNLRPEIRHEILNVPVRSVENLRAICRRRE
FT                 SFLEDVRKSQGYQKVVPFRKQVSELVEEMMDAEEFAEGEVNGEVCAMALLC
FT                 WNCRKEGHRHKECRTKRKVFCFGCGAPNNYRHTCPNCLKNGKANAFSGRQQ
FT                 ASVPKDKSTNGDLN"
FT   CDS           2829..4475
FT                 /product="Gypsy-37_DAn-I_3p"
FT                 /translation="MQISEIASNSHNLTEGQRCSLSEVIGKFPSFASSGLG
FT                 KTTLISHEIDVGDAKPVKQRHFPVSPAVEKLLYEEVDRMLEMGVIEESQSA
FT                 WSSPVVLVQKPGKVRLCLDSRKVNAVTKKDAYPLPQIDGILSRLPKAMYIS
FT                 SLDLKDAYWQIPLDPKSRDKTAFTIPGKPLYQFKVMPFGLTNASQTMTRLM
FT                 DKVIPPELRNEVFVYLDDLLVVSDTFETHMKVLSVVAEQMKIAGLTLNVEK
FT                 SKFCVRTVKYLGHIVGEGTIRTDPEKISAMADFPLPQNLRSLRRFLGMVGW
FT                 YRKFINNFASVSAPLTDLLKPRKKFEMTPEGEKAFFLLKDTLCSAPVLRSA
FT                 DFTRPFFVQCDASKSGVGGVLVQKTDQSDEYPIAFVSKKLNKAQRNYSVTE
FT                 QECLAAIICIKRFRPYIEGHEFTVITDHASLKWLMSQTDLHSRLARWALKL
FT                 QGFTFSIEHRSGKMNIVPDALSRVNEAELAAIEARRGLLIDLRAPEFRSAK
FT                 YLEVIEKIKANQNQLPDLKVVDGLVYRRTEHATGDQMHDIFRGAGCRGSKK
FT                 ES"
FT   CDS           4381..5496
FT                 /product="Gypsy-37_DAn-I_2p"
FT                 /translation="MDSFTGEQNMQRETRCMTFSEELVAEVLRKNHDEPLA
FT                 SHGGIHKTLERVRRYYYWPGLVNDVKSYTQACEVCKSTKAPNKTLRPPMGV
FT                 APVSERFFQRLYVDFLGPYPRSRSGNVGIFIVLDHYSKFVFLKAVKKFTAD
FT                 VVIKYLQQDLFHTFGVPETVVSDNGTQFRAETFQKLLREYSVSHTLTAAYS
FT                 PQSNASERVNRSVIAAIRSYVRPDQKDWDEQLSSICCALRTAVHSASGASP
FT                 YYMAFGQNFVSSGSSYKLLRALGLLEDRSLALSKEDSMEIVRKKAREVLRK
FT                 QNEKNERQYNPRAREVAYKEGQEIFYKNFKQSNFAAGYSAKLGPAFVKARV
FT                 RKRVGNSCYELEDLQGHLLGKFHAKDMRQ"
XX
SQ   Sequence 5949 BP; 1769 A; 1139 C; 1468 G; 1572 T; 1 other;
     aataaaaaaa aaaatataaa aaaaagtagc agcattagtt ttctcaaaaa gaaaaaaaat        60
     ttttcgcttt ggaattgcag caattatttt catgatgaag tattagctga ccacgaaata       120
     atgggaaaac aaagtttgta gtgcagtgta cgaagctggg attataggca aaagcgatag       180
     aacgcaatcg cctagccgct gtcgtaaagc agcatttgtt gttggtgtat gcgcacaagc       240
     aacaggtgtt tagcaccact cacgtgattt ttttttcttt cttcattcct tttttttttc       300
     ttttccttcg catgcaggtc ttatctcaag gggtgtagtt atgttcaggg tcaattattt       360
     tatgatatat ttgtcgtttg cgattttagt ttttttgtcg gttctggccg tgatttaaaa       420
     aaaaaaaaaa aaaaaaaaaa agtaaataaa taaataaaca aataaattaa ttttttttta       480
     aatcaggcga tcaaaccctt agcgaatcta ggtcaacctc tgaggggttc gatcaaaccg       540
     aagttaagat aggtcagttc tgtattggtt cgagtagaca gttgtgggaa gctgaagaat       600
     cagctgatgc aacggaaagt tcatcgacct tttcgtttgg atattacatc tgtttgaatt       660
     ccctgttgtg ggaagcaaaa gaatcagctg atacaacgga aagttcatcg accttttcgt       720
     tcggtgaaat tccatatcac atctgttcga actccctgct ttcatttttt ttacctttac       780
     ctatatattt tttttagatt tatttgcaag ttagttttaa tattattatt atcaatagct       840
     tatttgtcat taaataatcg tgtcagtatt ttttttcatt tagatatatt attttttctg       900
     tccttgctaa attctagaaa ttaaccagtt atgccagatc ccgaagaaaa tgtggcacaa       960
     aagtgtccgt tatgtgattc caccttagat gttggaaaaa catacaaaac caaatgtggt      1020
     catgttttcc atcagtcctg cattgcaggc tatgccaaaa gtaaaacaac gtgtcctact      1080
     tgtagcacag tatgcttcga aagatcggat actccagctc aaaacactag gtcaaataga      1140
     gggcagatgt tagattctac tcccagtggc tcatcagggg catccgcgtt gggactggct      1200
     cagaaagagt taatccaaaa tacagtttta gacgctgtta agtccatgca gaacgagttg      1260
     ttgacagaat tatctgaaag aatggctagg ttgattgaag ccaatcttcc gacatcattt      1320
     gcagcggtag aaggttcaaa cccggaggga gcacttggaa ggaattcctt gggccaaatt      1380
     ccattaggta gtatggatga accaataggg tccaatcgcg aaacacccag gagtaatcac      1440
     tcagacctaa gccagaggcc cgacaaagta ggccatattt taaatagttg gaaattgcgg      1500
     tttagtggaa atccggaagg tcttagcgtc gataatttta tttaccgagt agaagccctc      1560
     accagacaaa cgctggaagg taatttttca attctaagca gcaatgctag ccttctgttt      1620
     gaaggaaaag cgagagagtt ctactggagg taccacaaaa atactcagga attgcgatgg      1680
     gattttcttt gtactgcgct aaggaggcag ttcagagacg cgcggacgga cttggatatc      1740
     cgagaagcca ttcgagatag gaagcagcgg gaaagggaag gattcgatac gttctatgat      1800
     gcaatagagg agttaatgga tcacctggac atgccactaa ccgaaatgga agtggtggaa      1860
     attttaaaaa gaaatttaag gccagagata aggcatgaga ttctgaacgt tccagtccga      1920
     tcggtagaga atttaagggc aatatgccgg cgcagggaaa gtttcttaga agacgtccga      1980
     aaatcccagg gttatcagaa ggtggtaccg ttccgcaaac aagtttccga gttggttgag      2040
     gagatgatgg atgctgagga attcgcagaa ggcgaagtga atggcgaagt ctgtgcaatg      2100
     gcactattat gctggaactg tcgcaaagaa ggccaccgac acaaagaatg ccgaacgaag      2160
     cgcaaagtgt tttgtttcgg ctgtggcgcc ccaaataact accgtcatac ttgtccgaat      2220
     tgtttaaaaa acgggaaagc gaacgctttc agcggtcgac agcaggcaag tgttccgaag      2280
     gacaagtcga caaacgggga cctgaactag tatgtccaat tcagaccttg gaaaaccctg      2340
     cgagatcacc tacatctgat ccgatcccga aattttggcc aaatctggtg gttccacaag      2400
     ttgcaggttt aaaaccgaaa gtgaagaaga aagtggtgtc tagaaatact aaaagaataa      2460
     ggtcctattg gaacaatgtt aaaactataa atacaattag gtttaaaaac aatgataatc      2520
     gtccgtatgc cgaagtcagg ctcctagata gggtagtggt tggtctatta gacacggggg      2580
     cggctattaa tgtgattggg gggaaattgg cagaacagtt aatacgaggt aaagttccgt      2640
     tcaaaagagt aacaacagtt gctaccacgg cagatggtca gaaacaggtt gtagtaggaa      2700
     agcttcaaac ggccgtgaaa tacaaggatg aaaccaagga tctcgagttc catatcatac      2760
     catccctgaa tcaggatttg tacttgggta ttacgttctg gacagcattt agtttgctgc      2820
     catcttccat gcaaatatca gaaatagcgt ccaattcaca taatctgacg gagggtcagc      2880
     gatgcagcct atccgaggta attgggaaat ttccttcgtt tgcctcgtcg ggattaggaa      2940
     aaacaacttt gatttcgcac gaaatcgacg ttggggacgc taagccagtc aagcaacgtc      3000
     actttccggt gtcaccggcg gttgaaaagc ttctttacga agaagtcgat cgaatgttgg      3060
     aaatgggggt gattgaggag tctcagagtg cmtggtcttc gcctgtcgta ctggttcaaa      3120
     aacctgggaa agtacggttg tgtttggaca gtcgtaaagt taacgctgtt accaaaaagg      3180
     atgcttatcc tttaccccaa atcgatggaa ttttatctcg acttccaaag gcaatgtata      3240
     tctctagcct cgatttgaaa gatgcctatt ggcagatccc gttggaccca aaatctcggg      3300
     ataaaacagc atttacaatt ccgggaaagc cgttgtacca attcaaggta atgccattcg      3360
     gtttgactaa cgcgtctcaa acgatgactc gattaatgga caaagttatc ccgcccgagc      3420
     ttaggaacga agtctttgtc tatttagacg atctcttggt cgtctcagat acatttgaaa      3480
     cccacatgaa ggttctaagt gtggtggccg agcaaatgaa aatagctggg ctcacactaa      3540
     acgtggagaa gagtaaattc tgcgtgagaa cggtaaaata tcttgggcat atcgtgggag      3600
     aagggactat acgaactgat ccagaaaaaa tatcggccat ggcggacttt ccacttcccc      3660
     aaaatttaag atctcttcgg cgttttcttg gcatggtggg gtggtatcgc aaattcatca      3720
     ataacttcgc atcagtatcg gctccactta cagatttgtt gaagccaaga aaaaaattcg      3780
     aaatgactcc ggagggggag aaggcgtttt tcctgcttaa ggacacgctt tgctccgccc      3840
     cagtgttacg tagcgcggat tttacaagac ctttcttcgt gcaatgcgat gcaagtaagt      3900
     ctggagtggg tggcgtgctg gtgcaaaaga cagatcagag tgacgagtat cccattgctt      3960
     ttgtatcgaa aaaattaaac aaagcccaaa ggaattattc ggttactgaa caggagtgtc      4020
     tcgcggccat aatttgcatc aaacgtttcc ggccgtatat agaaggccat gagtttacgg      4080
     tgatcactga tcatgcttca ctcaaatggc tcatgagtca gacggatctc cactcgcgcc      4140
     tagctcgatg ggctctaaag ttgcaaggtt tcacgttcag tattgaacac agaagtggga      4200
     aaatgaatat tgtaccggat gctttgtcta gggtcaatga ggcggaacta gctgctatag      4260
     aggcgagacg cgggctttta atagatctgc gagcaccgga attcaggtcg gccaagtatt      4320
     tagaagttat agagaaaatc aaggccaatc agaaccaatt gccagatttg aaagtggtag      4380
     atggactcgt ttaccggaga acagaacatg caacgggaga ccagatgcat gacattttcc      4440
     gaggagctgg ttgccgaggt tctaagaaag aatcatgacg agcctcttgc ttctcacgga      4500
     ggtattcaca agacgttgga aagggtgagg cgatactact attggccagg gttagtcaac      4560
     gatgtgaagt cgtatacgca agcttgtgaa gtttgtaaat ccaccaaggc cccaaataaa      4620
     actcttcgac ctccaatggg cgtggctcct gtatcagagc gatttttcca gcgtctttac      4680
     gtagattttc tgggtccgta cccccggtct cggagtggga acgtcggaat attcatagtg      4740
     ttggaccatt actcaaagtt tgtatttcta aaggcggtaa aaaaattcac ggcagacgtg      4800
     gtcattaaat atctccagca agatcttttt catactttcg gcgtaccgga aaccgttgta      4860
     tccgataatg gaacgcagtt cagggctgag acttttcaga aattgctaag ggaatattct      4920
     gtttcacaca ctttgaccgc tgcttattcg ccccagtcga acgcatcgga gagggttaac      4980
     cgatcagtca tcgcagcgat aagatcttat gtcagaccgg accagaaaga ttgggacgag      5040
     caactcagca gtatttgttg cgctctacgt acagcggttc attcggcgtc gggtgctagc      5100
     ccttattata tggctttcgg ccagaatttc gtctcctcag ggtcatccta caaactgttg      5160
     agagctttag ggctgttgga ggacaggtct ttggcgcttt caaaagagga ctctatggaa      5220
     atagtccgga agaaggctcg cgaggttctg aggaaacaga atgagaagaa tgagcgtcag      5280
     tataatccgc gggctagaga ggtggcttat aaagaagggc aagaaatatt ttacaaaaac      5340
     tttaagcaga gtaattttgc ggcaggatat agtgccaaat taggcccagc attcgtaaaa      5400
     gctagagtgc gcaaaagagt tggaaactca tgctatgagt tagaggatct gcaaggccat      5460
     ctcctgggaa aatttcatgc aaaggatatg agacagtagc caaggcagat acaagctgtt      5520
     ggtggaatct gtcttagggt atcaaacccc aagccagatt cttggcggag gggctttgta      5580
     acgcttgtat ctgtaaaaag aaaggcagag gggaaaggtg cgccatctag aagacaagtt      5640
     tcaaactaga aaggggcata gagagattag aaggagtgca accgggtaag atggcaactt      5700
     tccattttgg gggattgtct cttcgggcaa aggccaggga ggattcggcg ccaattttgg      5760
     cgtctgtgcg atcattccct cattgcacct ccgcagattc ggttgagtgg attggtttac      5820
     ctaaaagtgt ccaagtgcta agtggaaaaa atcggcgaac gaggagcgta ggtccagggg      5880
     cggaaaagtc caacaggaaa gcccactgtt tttgtggcca gttctggatc cgtggaggta      5940
     agaaagggg                                                              5949
//
ID   Gypsy-37_DAn-LTR repbase;    DNA;    INV; 2183 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DAn_;
KW   Gypsy-37_DAn-LTR; Gypsy-37_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2183
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 308-308 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2183 BP; 672 A; 451 C; 460 G; 600 T; 0 other;
     tgcgggtcag tcaggaattc tcgtcaagta tctctttcat gactaggctc ggcgaaagga        60
     taattattgc cggaacagag gggaagtcag gcagccccaa cgagtcggag cggatctgaa       120
     ggattccgga agcccacggc gcaaagcagc aggagcagag ttcgccggga agattccggg       180
     ttgtgcttag attgtcagat agaccccaaa acaaataaac taagaaagac tcaatcgatg       240
     ggcttgagtt tgactcgcta ggcccaccat caaacccttt gcgcgagcgg cagtttgatc       300
     ccaaccgcgc tcgatagcgc ataatttttc ctcgccgcga gcaaaatcga aaaagatcgt       360
     cagttttccg gcggaaaagt gacccgtgag tgacccgggg cacttgggag acatctggcg       420
     atcccggcgc gagaatacgg aaagttttgg ccgggaaaaa tcggaggagc gaatccacgt       480
     gggattccgg cttccaaata agtgttagct taagtaaaat aagttttttt tagtgagtaa       540
     gaataatgtt ttaataattg ccaatggcta aaatcaattt cgagccattg gagtgaaaag       600
     ttgtaatagg aaatagagga gaaagttggc caaactcggg tcgaagtggt agtggggtta       660
     gacttaacct ttaaaaaaaa aaaagagaag aaaaaaaaat attttccatg ggcccatagt       720
     gcatttcagg ctaacgaaat ttccttgttt ttttttatta ttattttcaa gttccgaaat       780
     tttcagcaaa cccccaagtc cgagaaagcg ctttcgacga tggaattacc aagattgggg       840
     tgagtgtaaa tggaaaactc ttttataata gaaattttaa tcaaaagaaa ggaaaattaa       900
     atgaaatcaa taagcttata aaagagaaca agaaatgcct cctaaacacg atggccaatt       960
     taaaatttaa ataaaaagaa aggaaattaa aagttcaaat taatgttaaa tacctcagtc      1020
     caagtcgctc gacccagatc gttggcaaat tttcgctcaa gttcgagcgc aagttcattt      1080
     atatgttcgt ttatatgttc gaagcaattt ctacatttat actttaatag gaaggcctag      1140
     cttatgccta atttttcttt actattttga aaagccaatt cttgtcaatt ttatttactt      1200
     atacaattta taccaatatt tataacttgc caatatttca attagtatta tgttcatttt      1260
     agtaattaat cttagttctt ttagtaatta aataaatatt tataatgtgc taattaactc      1320
     tattttttga cccgacttaa ctgatcccct tgagaccgcc gaggtagggg ctaatagcaa      1380
     catcatgggt cttgtatcca ggaccgtatt agccacaggt agggtgggca aacaagcctc      1440
     acaacatctg aggtcttgag ccctcggcag tgtagtccgt agcgaaggaa cccacttttc      1500
     tatttttcct taatcctttc tcccgatggc caagatgagt agccgatctc ttaccaagag      1560
     aagcttgccc catgcacgca gttttttttt gtgaataatg agaaaaaggc accttgggag      1620
     gcgtggcaag aacaccaccc cattagctgg cgagccagag ccggaagatt tgtcatattg      1680
     cgtgcggcac ccctcccaaa ttcaacacct cgcctaggac tcgaatatca tatcctttat      1740
     gactttcaag gactcatcat cattgttaca aatggcgccc aacctcaggg ccacgttaag      1800
     caacgtagct caccatcaca actactcatt ttggccagag ttcacaaaac agtcctcaaa      1860
     ttaggaaaag tcaattaatt tattggttga tatacccaca gatggagttt gatctcgttt      1920
     tgtagctcat gctaggctca acctcgttcg aaattcgatc agccgcatag gaaacggata      1980
     gaccatgtac tgagaagtag ggtcgtccgg ccacggtttg acctaaactc gagcgagtgc      2040
     aaaagaatcc ttttaaaatt ccctctatct acatcaggtc catacgtttt tttatcatac      2100
     gcataggaat tgcaggcatt tgtgggctac ttataaccgc attgcctgac cacggatgat      2160
     attagaacgc agtgaactcc tca                                              2183
//
ID   Gypsy-37_DEl-I repbase;    DNA;    INV; 6740 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DEl-I.
XX
NM   Gypsy-37_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6740
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 478-478 (2012).
XX
RN   [2]
RP   1-6740
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           690..2057
FT                 /product="Gypsy-37_DEl-I_1p"
FT                 /translation="MSFLSYRDPRQHSDSESDSERLPITSTPRQAATGADP
FT                 NTNMAINADQLQAVIQAAIANALIEKAGEDQRRENEMRKTIENLAKQVAET
FT                 RVSPAQIGTPQIKIYEPIDIKNNVQCNEPLDAVKCLPEFTGAQETYVSWRQ
FT                 AAVAAYYIFKNYIDSSRHYQAVVIIRSKIRGPADAVLSSFGTVLNFDAIID
FT                 RLDFTYSDKRQIHVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSY
FT                 EASAARILCEKFRGDALRIFISGLKRSLSDVLFSAKPKDMPTALALAQEVE
FT                 SNHERYTFATSFAKSLEDRDRKQFPKAQDRQQNSYQAHPQVSAGKNPHFTK
FT                 QHKAQVHSAPHNDRRHENTPEPMEVDPSMSRMLKPSQAPAYQNRKPAESGR
FT                 SGPHKRQRVNHIAQGAGEINEQYTAAASSAAQEINDDAIHEYDSDAINFLG
FT                 ESPCYLSSDEE"
FT   CDS           2015..5107
FT                 /product="Gypsy-37_DEl-I_2p"
FT                 /translation="FFRGKSLLPVIRRRVAGIDMKLLVDTGAAKNFIRPYE
FT                 GLKGVRPVESPFTIHSIHGVTTITKKCFVSLFNLKATFFILPDLSSFDAII
FT                 GLDLLKQAGASLCLASGYLKWGSEAEKLEFQSCPDVNFTNIDFSDAPPLAR
FT                 EAFIKMLGEQKKAFANPNEALPYNTSVVATIRTVSDEPIYAKLYPYPMGAA
FT                 DFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDEAGNRKMRLVLDFRK
FT                 LNERTIPDRYPMPNISVILGNLGKAKYFTTLDLKSGYHQINLAERDREKTS
FT                 FSVNGGKYEFRRLPFGLKNAASIFQRTIDDILREHVGKFCYVYVDDVIVFS
FT                 EDANAHIRHVNWVLKSLHDANMRVSTQKSRFFKKSVSFLGFIVTNNGATTD
FT                 PEKIKAIQEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPVSDILKGEN
FT                 GSVSRHRSRNMQVQFSEQQRLAFRKLRNILASEDVILRYPDYKKAFDLTTD
FT                 ASATGIGAVLSQEGRPITMISRTLKDREVNYATNERELLAIVWALAKLRHY
FT                 LYAVKDINIYTDHQPLTFAVSESNPNAKIKRWKARIDESGAKMFYKPGKEN
FT                 LVADALSRQQLNVVEAEEAYSCAATIHSEVSLTHTIETTDKPLNCFQNQIT
FT                 LGEARFPSKRSFVLFGNKRRHDIDFTCKESLLEELADIIVPKGVNAIHCDL
FT                 HTLAMIQDELVRQFPATKFWHCKNRVTDIFAVAERREVLTTEHNRAHRSAQ
FT                 ENVKQVLSEYYFPKMAKLANEIVTNCKTCAKAKYDRHPRKHELGETPVPSH
FT                 VGEMLHIDIFSTDKKYFLTCIDKFSKFAMVQPIPSRTIEDLKPALLQLLNV
FT                 FPKARVIYCDNEPSLNSHTIRTMLENHFGVSISNAPPLHSVSNGQVERFHS
FT                 TLVELARCLKIDKGISDTVELILLATSKYNKSIHSVIDKRPADVVVTQCDP
FT                 QCDIQDRIRRAQDKLRSRENASRQNRVFNVGDKVLVKSNRRLGNKLSPLCE
FT                 EKTVEADMGTTVLIKGRVVHKDNLK"
FT   CDS           5215..6738
FT                 /product="Gypsy-37_DEl-I_3p"
FT                 /translation="MLKFVMLWWRATPLVYKTLQQIQNYRFKLIPLLFLFA
FT                 LTSAHVMDYSQAKYIPVIDGRILVWEEFASLRHSANLSEYRRVVEETGGMI
FT                 NMFPQSHMQKLLSVDVAHLRDLLESLSIHHRVARSLDFLGAALKVVAGTPD
FT                 AEDFEKIKFNEFQLNNANNRQISINNKVQEQINKISAIVNQLLRSAKESQV
FT                 DTGHLFEMLLTRNRMITMELQNLILAIALAKVSIVSPSILDHADLESVWME
FT                 EPTGTAIKDVLSVASVKILQSTNILHFIIKFPKIKLECIKITVFPVSHHDT
FT                 MLRLEDKVIADCNGEILTVKNCSITPGATFCQLALRRSCAQELHAGGTAHC
FT                 GIQHSDLHPVTYVDEGILIVNDRPARVRVDNGTYVHIRGTHLITFTESATV
FT                 NETRYVNHDVAQKRVPGVASSPILNITLEHNTLSLPYLHRLSERNLEHIKK
FT                 FGEDINGYRSHQILLIVGAICCALICIGLTYQRVTQARRSTAQLKEVIAKI
FT                 GSAEGGLNSEGG"
XX
SQ   Sequence 6740 BP; 2017 A; 1642 C; 1468 G; 1613 T; 0 other;
     ggcgcccacc gtaaattacc cattgtcata aaattgggga accatgtaag tgagcacctc        60
     catacatata ttttcccaat ctgcatttgt aaaacattca aacacactgc cagaatactt       120
     tctgcagctc cacattaatg gtttcgtgtt aacattttaa taaattagca tactaactag       180
     ttgattgaca gtttaatttg tgtaattaca cgcgtatcat aaatgtttat tattgtgtat       240
     tgtttgcata attattttaa ataaatatcc caaggccaaa atattaccga tattacggcc       300
     atacataaaa ttataaacat catacacctt aggcgcaaag gcgctgctgg aaaataaata       360
     aattgtgcat ttattgaatt aattttcttg gcgacggaaa ctgtctcata taaattatag       420
     gatttaattc agcccttttg tgtcattgtt tttttgctta tacctaaaaa ttctgtgtat       480
     tagctttgca acaatcttgg ggtcttttta ctgcttcctc gacccgctcc ggtccgcgaa       540
     cccgacaccg ctcattcgcg ttttgactct gttagcttcg cctctttgtt tatcatagcg       600
     acagctcagc cgccacggtc ccgtttgaat tttgtttata gctgcttagg catgcaactc       660
     ttgggtaatg gaatttagca ttgctatcca tgtcgttcct aagttatagg gatccaagac       720
     aacatagcga ctcagagtca gactcggaga ggcttcctat tacttctaca ccgaggcagg       780
     cggctaccgg tgccgatccc aatacaaaca tggccataaa cgcagatcaa ctccaagctg       840
     tcatccaggc ggccatcgcc aatgccctca tagaaaaggc tggtgaggac cagcgcaggg       900
     aaaatgaaat gcgcaaaacc atagaaaact tagctaagca ggtggcagag acgcgggtat       960
     cacccgctca aatcggaacc ccccaaataa aaatttacga acccattgac attaaaaaca      1020
     atgtgcaatg caacgagccc cttgacgccg tcaaatgcct tcccgaattt acgggggcac      1080
     aagaaacata tgtctcttgg cggcaagcgg cagtagccgc atattatata tttaaaaatt      1140
     acatagatag ctcacgccac tatcaggcgg ttgtaattat taggagtaaa ataagaggcc      1200
     ctgccgatgc agtgctatcc tcgtttggca ctgtattgaa tttcgatgca atcatagacc      1260
     gcctcgattt cacatacagt gacaaacgtc agattcacgt catcgagcag gagatgggca      1320
     cccttagaca gggaagcctc actctcctac aatactatga cgaggttgag aaaaagctca      1380
     ccttgctcac aaataaagcc accatgtcgt acgaagcatc ggcggccaga attctatgcg      1440
     aaaaattccg aggtgacgcg ctccgtatat ttatttcggg cctcaagcgc agtctctccg      1500
     atgtcctttt ctcggcaaag ccgaaagata tgccaactgc attggcattg gctcaagagg      1560
     tggaatcaaa ccacgaaaga tacactttcg caacatcgtt tgcaaagagc ctagaagata      1620
     gggatagaaa gcaatttcca aaggcgcaag atcgccaaca aaattcctat caagcgcacc      1680
     ctcaagtaag cgcgggcaaa aacccacact tcactaagca gcacaaggct caagtgcact      1740
     ccgctccgca caacgacagg cgtcatgaaa acacgccaga gcccatggag gttgaccctt      1800
     caatgtctag gatgctcaag ccatctcaag ctccggctta tcaaaacaga aagccggccg      1860
     agtccggtcg atccggccca cataagaggc agagggtcaa ccacatcgcg caaggcgcag      1920
     gcgaaattaa tgaacaatac actgcagcag cttcaagcgc ggcccaggaa atcaatgacg      1980
     acgccattca tgaatatgat tcggacgcca ttaatttttt aggggaaagt ccctgctacc      2040
     tgtcatcaga cgaagagtag cggggataga tatgaagctt ttggtagaca cgggcgcggc      2100
     aaaaaatttc atccgtccat acgaagggtt gaaaggcgtc cgcccagtag aatcgccatt      2160
     tacgatacat tctatccatg gcgttaccac catcactaaa aagtgctttg tctctctatt      2220
     taacttgaag gccacgttct tcatattacc agatttgtct tccttcgatg ccataattgg      2280
     ccttgacctg ttaaaacagg caggggcatc gctgtgtcta gcttccggct acctcaaatg      2340
     gggctccgaa gcagaaaaat tggaattcca atcgtgcccc gacgtcaatt ttaccaacat      2400
     tgatttttcg gacgcaccgc ctctagctag agaggccttt atcaaaatgc ttggcgaaca      2460
     aaaaaaagcc tttgcaaacc ccaacgaggc cctaccctac aacacgtcgg tggtagctac      2520
     catcaggacg gttagtgacg agcccattta tgccaaactt tacccatacc caatgggggc      2580
     agcggatttc gtcaatggcg aaatccaaga gttgctaaaa aatggcataa tacaaaagtc      2640
     aaagtccccc tacaataacc caatatgggt agtagacaaa aagggcactg acgaagcggg      2700
     caaccgcaag atgcggctcg tattagactt tcgcaaatta aacgagagga caatacctga      2760
     tcgctatccc atgccgaata tctctgtgat actagggaat ttaggcaaag ccaaatactt      2820
     cacaacgctt gatttgaagt cgggctacca tcagatcaat ctggcagagc gtgaccgtga      2880
     aaaaacttcc ttttccgtta acggaggaaa atacgagttt cgccggctac cgttcggttt      2940
     gaagaatgcg gccagcatct tccaaagaac catcgacgac atactgcgag agcacgttgg      3000
     caaattttgc tatgtctatg ttgatgatgt catcgttttc tcagaagacg caaacgccca      3060
     cattcggcac gtaaattggg ttcttaagag cctgcacgac gccaacatga gggtgtcaac      3120
     gcaaaaatcg cgttttttta aaaaaagcgt tagctttttg ggctttatcg tcaccaacaa      3180
     tggtgccaca actgacccag aaaaaatcaa ggccattcag gaattccccg aacccaaaaa      3240
     tgtattcgag gtgagatcat tccttggcct ggccagttat taccgatgct tcatcaaaga      3300
     ttttgcatca atagctaggc ccgtctctga tatccttaaa ggagagaatg gaagtgtcag      3360
     caggcacaga tccagaaata tgcaggtgca atttagcgag cagcaacgac ttgctttccg      3420
     aaaattgcgt aacattctgg cttcggagga tgtcatcctc agatatcctg attacaagaa      3480
     ggcattcgat ctaacgacgg atgcctcggc aactggcata ggcgcagtac tatcccagga      3540
     gggaagaccc ataactatga tatctaggac cctaaaggac cgagaggtta actacgctac      3600
     taacgagcgt gagctgttag ccatagtttg ggcgctagcc aaattacgcc attacttata      3660
     tgcagtaaaa gatataaata tctatactga tcaccaacca ttgacattcg cagtgtcgga      3720
     gtccaatccg aatgcgaaaa tcaaacgatg gaaagctcgc atcgacgagt ccggcgctaa      3780
     aatgttttat aagcccggca aagagaatct cgtcgcggat gccctctcca gacagcaact      3840
     taacgttgtg gaggcggagg aagcttactc gtgtgcggcc actatccaca gcgaagtgtc      3900
     gctaacacac accatcgaaa ccacggataa gcctttgaat tgctttcaga accagataac      3960
     tctgggagaa gctcgctttc cgtctaaacg cagcttcgtg ctcttcggaa acaagagacg      4020
     gcatgatatt gacttcacat gcaaggaatc actgcttgag gagctcgcgg acattatagt      4080
     ccccaaaggc gttaacgcca ttcattgcga tctgcacacg ctggcaatga tacaggacga      4140
     attggtccgg caattcccag ccaccaagtt ctggcactgc aagaaccgtg tcacagatat      4200
     tttcgcagtc gctgagagac gagaagtcct caccactgag cataataggg ctcacagatc      4260
     cgcacaggag aatgtcaagc aggtactttc ggaatactat ttcccaaaaa tggccaagtt      4320
     agcgaatgaa attgtcacta actgcaaaac ctgcgctaaa gcaaaatatg acaggcatcc      4380
     tagaaaacac gaactcggcg aaacgccagt cccgtctcat gtgggagaaa tgctacacat      4440
     agacattttc tccactgata agaaatactt cctcacatgc attgacaaat tttccaaatt      4500
     tgcaatggtc caaccaattc cctctagaac catagaggac ctcaaaccgg ctttactaca      4560
     actccttaac gtttttccta aagccagagt catttactgc gacaatgaac cctcattgaa      4620
     ctcgcacacc attcggacca tgctagagaa tcacttcgga gttagcatct caaatgcacc      4680
     gccactccac agcgtctcga acggacaagt ggagcgattc cacagcactc tagtggagct      4740
     tgccagatgc ctcaaaatcg acaaaggcat cagcgacact gtagagttga tcttactggc      4800
     cacgtctaag tataacaaat ctatccattc ggttatcgat aagagaccgg ccgacgtggt      4860
     agtcacacaa tgtgacccgc aatgcgatat acaggatagg attaggcgtg cccaagataa      4920
     gttgagaagc agggaaaatg catcccgaca gaacagagtg ttcaatgtcg gcgacaaagt      4980
     cctagtgaaa tccaacagga gactaggcaa caagctttca ccgttatgcg aagagaaaac      5040
     tgtggaagcg gacatgggga ccacagtcct cattaagggg agggtggtcc acaaggacaa      5100
     ccttaagtag gcgaaacaca agcacgttgt cattcgccta ataattttta caattttttt      5160
     acatttttta tctctagcca cttggcatag gtttttattt gataattttt tattatgctt      5220
     aaattcgtca tgctttggtg gagggctacc ccgctagttt ataaaacact acaacaaatc      5280
     caaaattaca ggttcaagct catacctctg ctattccttt ttgccctgac atcggcgcac      5340
     gtcatggact actcgcaagc caaatacatt cccgtcattg acggacggat tttggtatgg      5400
     gaagaattcg catccttgag gcactcagcg aatctctcgg agtataggcg cgtggtggag      5460
     gaaactggcg gcatgattaa catgtttccc cagtcgcaca tgcagaagct tttgagcgta      5520
     gatgtcgctc acctgcgtga cctgctcgag tcactgagca tccaccacag agtagccagg      5580
     agtttagact tcttgggagc ggcgttaaaa gtagtggcgg gaacgccaga cgcggaggac      5640
     ttcgaaaaaa ttaaattcaa cgaatttcaa ttaaataatg caaacaatag gcaaattagt      5700
     atcaataaca aagtacagga acaaatcaat aaaatttccg ccattgtcaa tcaactcttg      5760
     aggtcagcta aagagtccca agtcgacacg ggacatcttt ttgagatgtt attaactcga      5820
     aatagaatga tcacaatgga gttgcagaac ctcatacttg caatagctct tgcaaaagtt      5880
     agcatagtta gccctagcat attagatcat gcagacctgg aaagtgtatg gatggaagag      5940
     cccaccggga ctgccatcaa agatgttttg tccgttgcgt ccgtaaaaat tttacaatcc      6000
     actaacattt tgcattttat aattaagttt cctaaaatta aattagaatg tattaaaatc      6060
     accgttttcc ccgtgtcaca tcacgacaca atgctcaggc tggaggacaa ggtaatagcg      6120
     gattgtaatg gagaaatcct cacggtaaaa aattgctcca taacaccggg agccacattt      6180
     tgccaactgg cgctaagaag gtcatgcgcc caggagctcc acgctggagg cacagcacat      6240
     tgcggcatcc aacacagtga tttacatccc gtcacctacg tagatgaagg catcctaatt      6300
     gtgaacgatc gtccggctcg cgtaagggtg gacaatggca cttatgtcca tatacgaggc      6360
     acacacctca tcactttcac tgaaagcgcc acggttaacg aaacccgata tgtcaatcat      6420
     gacgtagccc agaaaagggt accaggagtg gctagctcgc ctatcctgaa catcaccctg      6480
     gagcacaaca cacttagcct tccgtacctt caccgcttga gtgagcgtaa cctggaacac      6540
     attaagaagt tcggggaaga tatcaacggc tatcgttcac accagatatt gctgatcgta      6600
     ggagcgatct gctgcgcgtt gatctgcatc ggcctcactt atcagcgagt cacccaggcc      6660
     aggagatcca cggcccaact aaaggaggtg atcgccaaaa tagggtcggc cgagggcggc      6720
     cttaattctg aggggggagt                                                  6740
//
ID   Gypsy-37_DEl-LTR repbase;    DNA;    INV; 559 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DEl-I;
KW   Gypsy-37_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-559
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3101-3101 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. AG-TT termini. 4-bp TSDs.
XX
SQ   Sequence 559 BP; 149 A; 146 C; 128 G; 136 T; 0 other;
     agttaactaa gtaagccggg cgacggcaat gaccgatcgt ccgaaggctc gctccggcca        60
     aattgctgac acagcgtctg gccggaagct cgtgcatagc cggcaagcac tgcccattgg       120
     agtggccgct atgagtctct tttgtgtagc tttaagtttt agtttagatt tgacttcatg       180
     caaataaaga gctgctgctc atacaatata actccgacaa ccgtcgttaa atctttatca       240
     tttgaaaact gtctgagtct ctaggccagc agttaaagaa gggcagtcac ccttcctcca       300
     taatcatcgt aactcatcct gaggattatt cggccagccg gcctacaaag atagcggcaa       360
     gtcttactcc ccgccctccg tggatcatct gcaactgcga gggaccacct aagggaactt       420
     caattgccga cggcaattca ccgttggaaa gccatctata ttaattgtac tccgtggatc       480
     atctgcaact gcgagggacc acctgaagga gcatctattg acgacgacag cacaccgttg       540
     cgatacgaaa agattaatt                                                    559
//
ID   Gypsy-37_DWil-I repbase;    DNA;    INV; 5489 BP.
XX
AC   scaffold_181148;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DWil_;
KW   Gypsy-37_DWil-LTR; Gypsy-37_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5489
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181148; Positions  180652  175164.
XX
CC   Positions [4538-5029] - Integrase core
CC   'GAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           918..2216
FT                 /product="Gypsy-37_DWil-I_2p"
FT                 /translation="MSDEDTGNINIRETPIDTAPSTSAGMRTRSQTQLLQE
FT                 QAARSQSFVSERSNVETGLTSIGENIIDHDQFRTLQNELMTALTAQMARLI
FT                 ETNVTACMQKFNPVAPRRTSPLYQIDQLDLNNWNMSGEDQRRGDYGQRSSA
FT                 SRSVESDLLQRPDKVSHIMNGWKLKFTGKGLSIDHFIYRVEALTHQTLEGN
FT                 FDIMCRNASSLFEGKANEFYWRYHKSVGQIRWSTLCTAFKKQFKDLRDDGD
FT                 IEEDMRRRKQDVNETFDQFYDAIITLSDKMDHPMSNNRLVRILKNNLRPEI
FT                 RHEILNIEITSVSELREVCRKRESFLADVKRSHGYYKKTPFKKEVSELLPS
FT                 EQDLEGSDIEVEDEMEIDALSLICWNCRREGHRYQDCLEERRIFCYGCGLD
FT                 NTYKPNCAKCAKNGYKSAQNVGHRPKVMRAPKPNSQSNK"
FT   CDS           2126..5398
FT                 /product="Gypsy-37_DWil-I_1p"
FT                 /translation="MCKKRVQERAERGTQTKSDACSQTEFPIEQVNHSTAR
FT                 CPTTNNLVSETLQKNISSSQSRSNKRQKSFWAEIKTVQRSMDSICALDQGS
FT                 HDPRPFITVGILDRAISGLLDSGAGVSCIGGELAKQIISGGMPYKKLKVNV
FT                 TTADGSPQNVVGKMQTNISYNGQTKEVQIYLVPTLRLDLYLGIDFWKAFEL
FT                 LPSLNIAELDLTTIEHNLNHQQMGQLKKVINQFPSFAQEGLGRTNLISHSI
FT                 DVGNAKPVKQRHFPVSPAVEKLMYVEVDRMIELGIIEESVSAWSSPVVLVQ
FT                 KPGKVRLCLDSRKVNEFTIKDAYPLPHIGGILSRLPKAEFITSLDLKDAFW
FT                 QIPLELSSREKTAFTVPGRPLYQFKVMPFGLCNAPQTMSRLMDKVVPAKLR
FT                 NEVFVYLDDLLIVSDTLECHLDVLRELALCITRAGLTINIGKSKFCMKQVK
FT                 YLGHIVGEGGIRTDPEKVAAITDFPVPKSIKALRSFLGLCGWYRKFIENFA
FT                 SLTAPLTDLLRNKRKFVFDEAAEQAFQNIKKKLSKAPVLISADFKKPFYIH
FT                 CDASKTGVGGVLVQLSDEGDECPISFVSKKLNKAQKNYSVTEQECLAALVC
FT                 LKNFRAYVEGHEFTIITDHASLKWLMTQTDLSSRLARWALKLQGYTFKIEH
FT                 RKGKLNVVPDVLSRAHSEEIAAINAEDGLYVDLDSEHFKSKSYLELCDRIK
FT                 GMEQSLPDLKVIDGYVYRLAEHTNGDQLHDSQVWKLWLPSELVPEILKKAH
FT                 DSPLASHGGIHKTIERIRRHYFWPGLVGDVKSFIGECETCKTTKAPNFIMR
FT                 PLMGKTPESQRFFQKLYVDFLGPYRRSRRGHIGIFIVLDHLTKFVFLKAVK
FT                 KLTADVTIQYLESELFHAYGVPETIVSDNGSQFRSEAFKKLLNRYNVTHTL
FT                 TAVHAPQANASERVNRSIIAAIKAYVRDDQKDWDEYLSQINCALRSAQHSA
FT                 IGTSPYYLVFGQHMITSGKTYSLIRKLELLSDRSLRLNQPDSLDLARSKAC
FT                 AVMQKQQQKNGKAYNLRARQINYRVGQEVFRRNFKQSNFAQGYCSKLGARF
FT                 IKARVRKKIGTSNYELEDLQGHLIGNYHAKDIRP"
XX
SQ   Sequence 5489 BP; 1785 A; 967 C; 1180 G; 1557 T; 0 other;
     gttataatta tatcattatt ttattatttg gcgcccaatc gtgaggcctc attacaacat        60
     ttagatgaag tcaatgaaac tcgcaaatat tcaattttca aagaataaga aatctctatt       120
     tcctttcact tttatgacgc ctttagatta gctattgagt tcggaacaca gaaagcaaaa       180
     tacaagtatt agcttctgtc catcaactta gcaaactatt tgagtcaact ttagaactaa       240
     ataatgagac gagaaatttt gctggaattt aagcagaaat taaaactaag gtccaagcgc       300
     ttaaccgctt ttaaaacgtt gattttattt aggttcttac atgtatttat gaatacatct       360
     ttggtttacg ctcgctcagt cgcataggaa ttttaatcaa tactctccgg aaatgcgatt       420
     taaccacgat tgagttggtg tttgctaaga tctataaatt gaaaatttgc ccattgtaag       480
     cgcataggat tcgtcgggag aaccatcaaa agaagttttc gatgaccacg atttcaatga       540
     gtgaggatat tttcaattct aattctattt taaactatct atcctatttc tattttatct       600
     aaatagtctg tttatgctaa taggcagttt gtatgcttta ctgtgggaga gtgtagcatg       660
     gcatgaattc atttttttat gatttatttt ggttactttt tgtttcgatt gtttactgaa       720
     ttggactcga ttcatttgtc ttttattcat tgtctttcta attactgtcg atttttaata       780
     tattttatta gattcttata aatacaatac ttactaaata taatagcagt tagttaaaat       840
     aatttccatc ggtagtaggg tcaaataaca cttatagtaa gatagggtaa actgtatgaa       900
     attaaattta attcacaatg agtgacgaag ataccggcaa cataaatatc agggaaactc       960
     ccatcgatac tgctccttct acgagcgcag gtatgaggac aaggtcccaa acacagttgc      1020
     tacaagaaca agcagctaga agtcagtcct ttgtttcgga aaggtcgaac gtagaaactg      1080
     ggcttacttc aattggggaa aacataattg atcatgacca attcagaacg ctgcaaaacg      1140
     aattaatgac tgcgctaact gcgcaaatgg ctcgtcttat tgagacaaat gtgacggcct      1200
     gcatgcaaaa gtttaatcca gtagcaccaa ggcgaacatc cccgttatat cagatagatc      1260
     agctggatct aaataactgg aatatgtctg gtgaggatca gcgaaggggc gattatggtc      1320
     agagatcatc tgccagcaga agtgtagagt cagacttgtt acaaaggcca gataaagttt      1380
     ctcatattat gaatgggtgg aaacttaagt ttactggtaa aggactatca atagatcact      1440
     ttatttatcg agtagaagct ttgactcacc aaacgcttga aggaaatttt gatattatgt      1500
     gccgaaacgc cagttcatta tttgaaggaa aggctaatga gttctattgg cggtatcata      1560
     aatcagtagg gcaaattaga tggagcacct tgtgtacggc atttaaaaag cagtttaaag      1620
     atttgcgaga tgatggggac attgaagagg acatgaggcg tagaaaacag gatgtcaatg      1680
     aaacttttga tcaattttat gacgctataa tcactttgag cgataagatg gatcacccca      1740
     tgagcaacaa cagacttgtg agaattttaa aaaataattt gcgaccggaa atacgacacg      1800
     aaattttaaa tattgagatc acctcagtct ctgaactacg ggaggtatgt agaaagcgtg      1860
     agtccttttt agctgatgtg aaacgtagtc atggctatta taaaaaaact ccatttaaaa      1920
     aggaagtatc agagctattg ccgtcagagc aggatttgga aggatcagat attgaagtcg      1980
     aagacgaaat ggaaatagat gcattatctt taatttgttg gaattgtaga agggaagggc      2040
     atcggtacca agattgtctg gaagaaagga gaatcttctg ctatggctgc ggcctggata      2100
     atacatataa acctaactgt gccaaatgtg caaaaaacgg gtacaagagc gcgcagaacg      2160
     tgggacacag accaaaagtg atgcgtgctc ccaaaccgaa ttcccaatcg aacaagtaaa      2220
     ccacagtacc gcgagatgtc caaccaccaa caacttagtc tctgaaaccc tccagaaaaa      2280
     tatatccagc tcacaatctc gtagcaacaa acgtcaaaaa tccttctggg cggaaataaa      2340
     aactgttcaa agaagtatgg atagtatttg tgctttagat cagggcagtc atgatccgcg      2400
     gccatttatt acggtgggca tattagatcg cgcaattagt ggattgttag actcgggggc      2460
     tggagtatct tgtattggtg gtgagttggc caaacaaata atatccggtg gaatgccata      2520
     caagaagctc aaggtgaacg tgaccaccgc tgatggcagt cctcagaatg ttgttggcaa      2580
     aatgcagaca aatatttcat ataatgggca aacaaaggaa gttcaaatat atttagtacc      2640
     tactcttaga ttagatttat atttaggcat cgatttctgg aaagcattcg aattgttacc      2700
     atctcttaac atagcagaat tagatctaac aactattgaa cataatttaa atcaccagca      2760
     gatggggcaa ctaaaaaagg ttatcaatca attcccatcc tttgctcaag aaggtttagg      2820
     aagaactaat ctaatttcgc attccataga cgtgggcaac gcaaagccag ttaagcaacg      2880
     gcatttccca gtatcgccag ctgtagagaa attaatgtat gtagaagtgg atcgcatgat      2940
     cgaattaggc attatagaag agtcggttag cgcctggtct tcaccagtgg tgctggtaca      3000
     aaaaccaggg aaggttcgac tatgtttgga tagccgaaaa gtaaacgagt tcaccataaa      3060
     ggatgcgtat ccccttcctc acattggcgg gatcttgagt agacttccga aggcagaatt      3120
     tataacaagt ttagatctaa aagatgcgtt ctggcaaatc cctttagagt taagttctcg      3180
     ggaaaaaaca gctttcacag tgcctggcag gcctctttac caatttaaag ttatgccgtt      3240
     tgggctctgt aacgctcctc aaacaatgtc tagattgatg gataaagtgg tgccagctaa      3300
     attaaggaac gaagtcttcg tttaccttga tgatctctta atcgtttccg acaccttgga      3360
     atgtcattta gatgttttac gggaattggc tttatgcata acgagggctg gtttgaccat      3420
     aaacatcggt aaaagtaaat tttgcatgaa gcaggttaaa tatcttgggc atatagttgg      3480
     tgaaggtggt attagaacag atcccgaaaa ggtggctgcc attacagatt tcccagttcc      3540
     gaagtcaatt aaagctttaa gaagtttctt gggtctgtgt ggctggtacc ggaaattcat      3600
     tgaaaatttc gcttctttaa cagcaccatt gacagatttg ctaagaaaca aaagaaaatt      3660
     tgttttcgat gaggccgctg aacaggcgtt ccaaaatata aagaaaaaat tgagcaaagc      3720
     tccagtctta attagcgcgg atttcaagaa acctttctat atacattgtg acgccagtaa      3780
     aacgggggtc ggaggtgttc tagtacaatt gtccgatgaa ggagacgagt gtccaatatc      3840
     cttcgtatca aaaaaactga ataaagctca gaaaaattat tctgtaaccg agcaagaatg      3900
     tttggctgca ctggtgtgtc taaaaaattt tagggcttat gtggagggcc atgaatttac      3960
     catcatcacc gatcatgcct cattaaaatg gctaatgact cagacagacc ttagttctcg      4020
     tctagcaaga tgggccttaa aattacaggg ctatactttc aagatcgagc ataggaaagg      4080
     aaagctcaat gtggtcccag acgtgctgtc tcgtgcacat agtgaggaaa tagcagcaat      4140
     caatgcagaa gatggattat atgtggattt ggactcagag cactttaagt caaaaagcta      4200
     tttagaatta tgtgatcgaa ttaaaggcat ggaacagtca cttccagatc ttaaagtcat      4260
     agacggatac gtgtatagac ttgctgaaca caccaatggg gatcagctac atgatagtca      4320
     ggtttggaaa ttatggttgc ccagtgagtt agtaccagaa atcttgaaga aagcgcacga      4380
     tagtccatta gcctcacatg gcggaattca caaaaccatt gaaagaatca ggcgtcatta      4440
     cttttggcca gggttagtgg gcgatgttaa atcatttatt ggtgaatgtg aaacttgcaa      4500
     aacaacgaaa gctccaaatt ttataatgcg tccactgatg ggaaagactc cggaatccca      4560
     aaggttcttt caaaaattgt acgttgattt tctaggtccg tatcggcgat cacggcgggg      4620
     gcatattggt atttttatcg ttctcgatca tctcacgaag tttgtgtttt taaaagctgt      4680
     aaagaaattg acggcagatg tcacaattca atatttggaa tctgaactgt ttcatgcata      4740
     tggagttcca gaaactattg tctcagataa tggatcccag tttcgctctg aagcctttaa      4800
     gaaattattg aatcgctata atgtgacaca cacattgacg gcggttcatg ctcctcaggc      4860
     aaatgcatca gaaagagtta accgctcgat catagcagcc attaaagcct atgtcaggga      4920
     cgaccagaaa gattgggatg aatatctgag ccagataaat tgcgccctaa ggtcagcaca      4980
     gcattcggcc attggaacta gtccttatta tttagtattc ggtcaacata tgataacgtc      5040
     agggaaaacg tactcattga taaggaaatt ggagcttctc agtgatcgat ccttacgtct      5100
     taatcagcca gattcattag atttagctcg gagtaaggca tgtgcagtta tgcaaaaaca      5160
     acaacagaaa aacggaaaag cttataattt gcgagcccgg cagataaatt atagagtggg      5220
     tcaagaagtt tttagaagaa atttcaaaca aagcaatttt gcccaaggct attgctcaaa      5280
     attaggtgcc agatttataa aggcaagggt acggaaaaag attgggacat ccaactatga      5340
     attggaggac ttacaagggc atttgatcgg caattatcat gcaaaagaca ttcgacccta      5400
     atgggggaaa aaaagaaaaa aaacagcaac aagcggaatc agctttggtt tgctttgcaa      5460
     cccgtagtct gatttttcca ggtgggatt                                        5489
//
ID   Gypsy-37_DWil-LTR repbase;    DNA;    INV; 2321 BP.
XX
AC   scaffold_181148;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_DWil_;
KW   Gypsy-37_DWil-I; Gypsy-37_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2321
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181148; Positions  175163  172843.
XX
SQ   Sequence 2321 BP; 786 A; 404 C; 424 G; 707 T; 0 other;
     tgtaaaggcg cttgttgcta gagattggca acatttaaac aaaatgcaat gttgcaatgt        60
     tagcggggat gattgtatgc catgatcgta tgttgccaag cacatatctt cgggtcagcg       120
     catgccgcct ctcttgagca gcctctgtgg gtgcagagag acggccaaag agaagaaaac       180
     tttatctatg caaatgaagc aataaaaatt ctcctgttgc taagggaatg ctttctaatg       240
     ggagcaaaag agaaaggcag tggggtctat aggaccgttt tatagaatcc aggatggcgg       300
     cgaggtggat acaccaagcg tctgttttaa taggtttcta agttcttcgg gcaatctgta       360
     ggagtcattg caaattggta attcggcaaa gtcagacggt taatggtcaa gtgatactta       420
     aagcaattaa ctaagtcgct gaaaaaaaaa aatttttaag ttaaaatccc gcataattaa       480
     tccaaaagaa ttttgtacat atatttatgg ttggtgaagt tcatttcctt tcaaagtgct       540
     taaaagtgtt aaatatatac atttgggcaa gccctcaaga gggcggaacc acatttggtt       600
     tgccaaggcg atacccgtca cataaggtga gaaagtagaa aaatataact aaaaaaaaat       660
     aggtgtctgt ccttctgttt gtgttttgcg catagaattt tagcaaacgt ttaatttttt       720
     tttatcagca taaccaaaaa gaaaaaaaaa aaaagataaa cacttgcact ggcggcgtac       780
     catttttcgc atacccgaaa gcgctaatcg gataatcacc ccaagagacg cataccaact       840
     tacatcaata tacaagaaca taactatcag ctgatcgagc gaatgaccta agtatccata       900
     tctacctata tttcatctac agaagaaaaa caaagaacaa agcccaaata caaaaagata       960
     ccaaaaagaa aagaactttg aagggcaact aagcgctcgc ccgaatgcat acataggatg      1020
     tcgattggtt agcagtttta gttaagctag gtttaggtat agaaaaacgt aaaaattaaa      1080
     tttttttttg ttgttagttt ttttttttgc aatctcaagt caagtacttt aatgattaga      1140
     tgtaagaaaa aataattaaa ttttgaacta tgtaaagata aaggcaagca gcaaagtcag      1200
     cagaaaagac atacaaagaa aaaaaaagag aaaaaaataa aacaactaaa atcttttata      1260
     tacatatgta catggatagg taatagaatt acagggtatg catattcggt gctagaatat      1320
     ttttttatat ttttctttcc ttaaaacagc agtacggaga aagcgctttc gacgttggat      1380
     aaagaagctg taagtaatgt acacccaata tttatttatg taaaaacaaa aaaaaaatgt      1440
     tcttcacccc ttgcacctgc ccctttttcc cttaaaataa ctaaagtaat attccccaca      1500
     taaaataaaa gaaagaagag aaaaaaaaaa aacaaaaaaa aagaaatatt cccgttatca      1560
     tgcgtgtgca aatcgtgccc ttgtatgttc ttttggctta gctacttctg ctaaattgtc      1620
     tgtgcgccta atctacaact gttgctagcg ctaggtcttg cttattattt gatgagatac      1680
     ttttgctgaa atagcggcac ttcttgccga cgttttgttt tgattataaa ttttgatgat      1740
     ttttttttgt tctgtctact tgtaagagcg atcatttttt tgtaacttta agtatgttta      1800
     atactctaaa tttttttttc ctcttagata agcaataaaa atttataatg tctgattaaa      1860
     agttatcttg aattcatcca tctacacctg tctccccagt aaagaacgaa gggatcatct      1920
     gaagttaaag cttcaagcgg ccgatgatca taggaagggt gggcaattgt caatcgcaaa      1980
     accaccagtg attgcaagta tcgaaatgcc ccttgcatta tcagcgtatg aaattctatc      2040
     tttcgtttct atctttcttt tcaatctttc ttttgtatct tccttttcta tctttgtttt      2100
     ttttggtatt ctcttcctct tgtcgcatgc acgctcactt ttaataatat aataatgaga      2160
     aaggcaggca ggtcgatgaa aatataaata aataattgtg gtaactggat ttcggcagaa      2220
     ctacacccct tttgtcgacg agctagtgcc ggaaatttac agcgtgccag ccgatagcca      2280
     gctactgcca gacccgccca aactatacgt tacccgttac a                          2321
//
ID   Gypsy-37_HeAr-I repbase;    DNA;    INV; 4013 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4013
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5584-5584 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..886
FT                 /product="Gypsy-37_HeAr-I_1p"
FT                 /translation="MEDSAGKNGNATDGDQRDIWRVGVRIPPFYPEDPELW
FT                 FNQIEAQFVLSNISSDTTKFYYAVTQLEPTYVAHVKDVLRAPPATGKFEKL
FT                 KSELVKRLSASKEKKLQQLFLNEDIGDRKPSHFLRHLRNLAGPTVSDDVLK
FT                 TLWTGRLPHNLQTVVASQPKLSLDDLAELADRVHEIAPAMPHHQVAMASTS
FT                 VQPASFSRIDGLQQEICALTREVAKLTSYVYRQSRARSRSRSQENHNRKRS
FT                 HSRSRQPPPDHPHCWYHYNFGARAKKCAEPCEFRAGNDGGSRK"
FT   CDS           859..3990
FT                 /product="Gypsy-37_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SGKRRGQPEVAASDCPAQTGRLFVTDRTSKMQFLIDT
FT                 GSDLCVYPRSAIRAPSCKGKYTLSAANGTIIHTYGPILLHLDLGLRRDFAW
FT                 RFIIADVSKPIIGIDFLSYYNILIDCRNQRLVDGKTSLSVSVPRQIIPESI
FT                 VSIKTVTGESEYHSILREYPEVTRPTGLVRTVKHNTIHYINTTPGPPVACR
FT                 PRRLDPIRLKAAKKEFDDMLANGTAKRSESCWSSPLHMVKKKDDGWRPCGD
FT                 YRALNARTIPDRYPVRHIQDFSHQLSGCTIFSTIDLVKAYNQIPLNPEDVK
FT                 KTAITTPFGLFEFEFMTFGLRNAAQTFQRFIDEVLHGLGDFTYGYCDDILV
FT                 FSPSEESHKDHLRQVLSRLAEYGVLINTSKCVLGKPELNFLGYNVSAAGTR
FT                 PMESKVKAILDYPVPKTVKELRRFLGMLNFYRRFVPDAAKRQAPLNSLLMG
FT                 TNVKGSQPVQMTQELLQAFEDCKESLSNSTLLAHPDPTAELSIATDASNVA
FT                 VGAVLQQKNKNGDWEPLGFFSKKLAPSEKKHSPFDRELLAMYEAVKYFRHM
FT                 VEARDFYIITDHKPLTHAIVKTSENCSPRQFRHLEFVSQFTTDVRYIPGSQ
FT                 NVVADTLSRIEEVTQGIDYQALAQSQSTDEQLQHLLRNGSSLKLQKVVVPG
FT                 TSTKIFCDVSTETPRPYLTQEFRRQAFDSLHNLSHPGRTTTVRLVSQRYVW
FT                 PGIRKNCREWSRECLKCQGSKITRHTSAPTSPFLSPSSRFAHIHLDIVGPL
FT                 PTSHDFRYCLTVIDRFTRWPEAYPMADITADTCATALVSGWIARFGCPLKI
FT                 TTDRGRQFESHLFRAIASMVGAQHFRTTAYHPAANGMVERLHRQLKGAIMC
FT                 HSTTHWTEVLPLVLLGIRSSWKADIQASPAELVYGEPLRLPGQFIAPASEQ
FT                 DTADVTDLATRLRSHMGKLTPKPASWHSKSPFYIPRQLNSSSHVFLRQDFV
FT                 RRPLEPPYAGPYRVLERHPKYYKLDVCGKEMTVSVDRLKPAYLAREEDDTA
FT                 SPSSESHPRESDSEANLETEKRTRSGRRVHFPDFYRPQ"
XX
SQ   Sequence 4013 BP; 1118 A; 974 C; 941 G; 979 T; 1 other;
     agtggtgacc ccgaacaaag aactcaagaa cgcaatggag gacagtgccg ggaaaaacgg        60
     taacgcgact gatggagatc aacgcgatat ttggcgtgtt ggagtgagaa taccgccatt       120
     ttaccctgaa gatccggaat tgtggtttaa tcaaatagaa gcccagtttg tattgtcgaa       180
     tataagcagt gacacgacga aattttatta tgccgttaca caactggaac ctacgtacgt       240
     tgcgcacgtt aaggatgttt taagggcacc tcctgcgacc ggtaaatttg aaaaactcaa       300
     aagtgagctt gtcaagcggc ttagtgcgtc gaaagagaag aagctacagc agctgttcct       360
     gaacgaggat attggtgacc gtaagccatc acatttttta agacatttaa ggaacctagc       420
     cggcccaaca gtgtcggatg acgttttaaa gaccttatgg accggacgct tgccacataa       480
     tttgcaaact gtcgttgcgt cgcagcctaa gctatcatta gatgatctag ccgagttagc       540
     agaccgcgtg catgaaatag ctccagcaat gccgcatcac caagtagcta tggcctcaac       600
     ttcggtacaa ccagcatcat tctcacgcat tgacggttta cagcaggaaa tatgtgcttt       660
     aactagagaa gtcgctaaac taacatctta tgtctacagg cagtcaaggg cgcgttccag       720
     atctaggtcg caggaaaacc ataatcgcaa gcgtagtcac tcgcgtagtc ggcagccacc       780
     gcctgaccac cctcattgct ggtatcatta taactttggt gcgagagcca agaagtgtgc       840
     agagccatgt gagtttagag cgggaaacga cgggggcagc cggaagtagc ggccagcgac       900
     tgcccagctc agacaggccg tctctttgtg acagatcgga cttctaagat gcagtttctc       960
     atagacaccg ggtcagattt atgcgtttac ccgcgttcag caatcagggc acccagttgc      1020
     aaaggtaaat ataccctctc tgcagctaat ggcacaatta tacatacata cggaccaata      1080
     ttactgcact tagacctagg tttgagacga gattttgcgt ggcggttcat aatagctgac      1140
     gtgtctaaac caatcatagg aattgatttt ctgagttatt ataatattct tattgattgt      1200
     agaaaccagc gcctcgtaga cgggaagaca tctctctctg tgtctgtgcc ccgacaaata      1260
     attccagaga gcatagtctc catcaagaca gtcactggcg agtctgagta tcatagtata      1320
     ctgcgtgagt atcctgaagt cacacgcccc actgggctgg tacgtacagt aaagcacaat      1380
     actatccact atataaacac cacaccaggc cctcctgttg cctgtaggcc acgtcggttg      1440
     gatcctattc gtttaaaagc tgcgaagaaa gagtttgatg acatgctagc aaatggtact      1500
     gctaaacgtt cagaaagctg ctggtcttca cctctacaca tggtcaagaa gaaggatgat      1560
     ggctggagac cctgtggaga ttatagggct cttaatgcgc gcacaatacc ggacaggtac      1620
     ccagtgaggc atattcagga tttctcccac caattatcag gctgtacaat attttcaaca      1680
     attgatttgg tcaaagcata taatcaaatt ccgcttaacc cagaagatgt caagaagact      1740
     gccatcacaa caccctttgg actttttgaa tttgaattca tgacttttgg acttaggaat      1800
     gcggcccaga catttcagcg gttcatagac gaggttctgc atggcctggg agacttcacg      1860
     tatggatatt gcgacgacat cttggtcttc tctccttcag aagaatctca taaggatcat      1920
     ttgcgtcaag tcctatcgcg cctagctgag tatggtgttc tcattaacac gtccaaatgt      1980
     gttctgggaa agcctgaact gaattttctg ggttacaacg tctcagcagc tggtacccga      2040
     cccatggaaa gtaaagtaaa agctatctta gattaccctg tgccgaaaac tgtgaaagag      2100
     ttgagaaggt ttctaggaat gctgaatttt taccgtcgtt ttgtaccaga cgcagcaaag      2160
     cgacaagcac cgcttaattc tcttctgatg ggtacaaatg tcaaaggctc gcagccagtc      2220
     cagatgacac aggagctact gcaagcattt gaagattgca aggaatcatt gtcaaattca      2280
     acattactag cacatcctga ccctacagcc gagttaagca ttgcaacgga tgcttcaaat      2340
     gtcgctgttg gcgctgttct gcagcagaaa aataagaatg gtgactggga acctttagga      2400
     tttttctcta aaaaactagc tccgtcagaa aagaaacata gcccatttga cagagaactc      2460
     ttagctatgt atgaagcagt taaatatttc cgccatatgg ttgaagctcg agatttctac      2520
     atcataactg atcataaacc tctcacacat gccattgtta aaactagcga gaattgctcg      2580
     cctaggcaat tcagacattt ggagtttgtg tcacagttca caactgacgt gaggtacatt      2640
     cctggaagtc agaacgtggt ggcggatacc ttgtctagga tcgaagaggt cacacaaggt      2700
     attgactatc aagcccttgc acaatcacag agcactgacg agcaactgca acatttattg      2760
     agaaatggat cgtcactcaa gttacaaaaa gtcgtcgtac cagggacgtc aacaaaaata      2820
     ttctgtgacg tgtcgactga gacaccgcgt ccttacctca cgcaagaatt ccgtagacaa      2880
     gctttcgact ctctgcacaa cttaagtcat cctggaagaa caactacagt gcggctggtc      2940
     tcacagaggt acgtgtggcc agggattcgc aaaaactgta gggagtggtc tcgcgaatgc      3000
     ctcaaatgcc aaggcagtaa gataacacgc cacacttccg cccctacctc tcctttccta      3060
     tctccttcgt ccaggttcgc tcacatccac ctcgacattg tcggaccttt accaacttct      3120
     catgatttca ggtactgtct caccgtcatc gacaggttca cgcgatggcc tgaggcgtac      3180
     ccgatggcwg acatcactgc ggacacgtgt gcaacagcgc ttgtgtctgg ctggatcgcg      3240
     aggttcgggt gtcccttgaa gataacaact gaccgagggc gacagttcga gtctcatctc      3300
     ttcagagcca tcgcgtcaat ggttggtgcg caacacttcc gcacgaccgc ataccaccct      3360
     gctgcaaatg ggatggtcga gcggctacac cgacagctca agggagccat aatgtgtcac      3420
     tctacgacgc attggacaga ggtacttcca ctggtacttt taggcatcag aagttcatgg      3480
     aaggcggata tccaggcgtc accagcagag ttggtctacg gggaaccgct ccggttacca      3540
     ggccagttca ttgcacctgc cagcgagcaa gacacagctg atgttactga tctcgcgaca      3600
     cgcttacgaa gccacatggg taagctgact ccaaaacctg cttcctggca cagcaagagt      3660
     ccattctaca tacctcgaca actcaatagt tcatctcacg tgttcttgcg gcaggatttt      3720
     gtccgaagac cgcttgaacc accatatgct ggcccttaca gagtactaga acgccaccca      3780
     aagtactaca agcttgatgt gtgtgggaaa gaaatgacgg ttagcgttga cagactgaaa      3840
     cctgcatacc ttgctcgcga agaagatgat actgcatcgc catcgtctga gtcacatccc      3900
     agagaatctg attctgaggc caacctggag acagaaaaga ggactcgaag tggacgacgt      3960
     gttcattttc cagattttta tcgcccgcag tagcggtctc agcgggggag tac             4013
//
ID   Gypsy-37_HeAr-LTR repbase;    DNA;    INV; 401 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-401
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5614-5614 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 401 BP; 87 A; 118 C; 77 G; 119 T; 0 other;
     tgtggcaaca cccgagatca aaggacgcac atgcattggt cgcataaagg tgtgcactct        60
     aatcaagcgc atcggttgtt tgcctcgccg cctgctcccg cgcacacccc ggacgtcgca       120
     tgcgccgcca acccgctatc gctcggtcgc agtcgccagt gcctagctaa ctccgacggc       180
     gaatgcacgc tcaattttac ctgcgcaaat ccgctaccat ttttcatatt tccttagttt       240
     cgcgtttctt cttctatctg tatctgcttc tactatcatc tttcgaatac ttactgtctt       300
     cactatccgc ctgtgctatt tgtgactgta aagcttgtga ctgtgggata taataaacgt       360
     ttgtaaaatc aacggtttct tcatcattta aatcacccac a                           401
//
ID   Gypsy-37_LMi-I repbase;    DNA;    INV; 4754 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4754
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(727..1344,1080..1862,1742..2632,2491..4752)
FT                 /product="Gypsy-37_LMi-I_1p"
FT                 /translation="MELRGMTRACRFECTCGQSYRDAIVQNVTDSRLRAEV
FT                 LKLSDPTLEDVIRIIEAQELFDSAELEMSPPVVAALDTRQSQHNRGGGPLG
FT                 RRKPPTTRQQQQRSGGKLQSCPKCYLSHDRDLVSFVELNVSFAIRWVTFRP
FT                 CALRNYGDSLQPQPIAGRKQWMSIKLTLTMPHSSTSRCRTNTNHFRPVIVF
FT                 PQSMPHPQMAHSALLSGPCQFRRAKCLFCNKVGHIQTVCSKKLRRQSATTA
FT                 NRWSEAMDVNQVDLDDATLLNQSVSDEHEPFQTCYSISTEHAPSADGPQRP
FT                 SKLVREPKKIFIQLRIWGQDVNFQLDTGASVTLVNRCTFEKLGSPPLETSA
FT                 QTLTTYNGDYIAVLGRCSLPMQYRTTTKMIPVTVLQAYESPNIFGLNAFDI
FT                 FGLQISDNVATIHSHVLHDSIRKLCDRYPRLFEDSLGMAQGFFAHITLKDN
FT                 AQPDSSRPERFPMRFGMRLQQSRLFGYGXGFLRAHHLEGQCATGFFKAREV
FT                 PHAIRDEVAAELKRMQELGVIAPLSASRWASPLVVVRKPNGQLRLCADFKS
FT                 TVNAQSIVDSYPLPRPEQLMDKLQGGVFFSKIDLKDAYLQLPLDDATKSFL
FT                 VVNTHIGLFQYQRLPFGSASAPAIFQRFLEQLTAKVPSCSNYLDDIVVSGR
FT                 TPDEHLRNLECLFXALSDAGLRCNREKCEFFCNQIEYLGHVIDSNGIRPTS
FT                 RHLQAIRELPSPKNVTELQAFLGRSPIIFALYQMLLRLRHRYITSVGKMSP
FT                 SIGRPHRKLPFRLAPSIPWKISYYLRFIPNAAQIAAPLHHLRRKNVPFHWS
FT                 TPQETAFQTLKXILLSDRCLVHFDPSKPMVLAVDASSYGIGAVLSHRFGST
FT                 DRPIAFASKLLNKAQVNYSQLEKEALAIIYGVSKFHQYLYGRKFFLLTDHK
FT                 PLTSLFHPAKPVPTRTAQKLQRWALILANYNYEILYRPTASHANADTLSRL
FT                 PVGSDTAFDSSEDACFHIDQIDEATVDNFPIDHTCIAAATERDSTLKLLRQ
FT                 FILTGWPTDKKQLPNESLRRWFSQRHAFSVQRGVILLHTPNEQTRVLIPAS
FT                 LQRRVLELLHKGHWGIVRSKQLARRHCTWLGMDRDIENMIANCRECAENQP
FT                 APHQQFFNWPQPDAPWQRVHIDFAGPFWGSRWLIVVDAYSKFPFVVPMTST
FT                 TSASTIRALATIFSQEGLPSTIVSDNGPQLTSSEFASFCKANGIMHITSAP
FT                 FSPQSNGEAERFVRTFKAQMTKLRQSHSKENALLLFLSTYRTTPQGDKSPA
FT                 ELLHGRAHRTTLHLLHPPQSPMAPSILPTKFQATDKVYFRVFNRXHSWELG
FT                 IVVRPLGRATYVIRDSSGRTHHRHQNQLRSRTIPDPATDLSVPGQVPVDNS
FT                 ALGNPLQRVSSQSPGTSGGPPHIRCRSRHHHRRHGCLTLPDHGSSRRHPEL
FT                 QPRSSFSGTSPPSPQPTPRSAQAQLQLSSAPMTPMDLDPPPSPRDHAPFVG
FT                 QDALPASSVSSVQWGHPRHGARCSTTVPRPGFWSGCSSFAQPDIPAAMAGA
FT                 GG"
XX
SQ   Sequence 4754 BP; 1096 A; 1393 C; 1071 G; 1185 T; 9 other;
     attaagtggc gacagaggct ggttcttggt tgctgtcggt gtctatcatt tggcagcgtc        60
     gtgactttca ctgttccgtc tccaggacgg cgttgcgctc cgctttgtct tgtctacaag       120
     ggtactcgtg ttttctggtt ttcgggtgca tacggtagct cgctttgcgt tgacgactta       180
     ttttctctgt gtgtggtttc tttgcatgtt gctcgctgcc taatttccct ttgccatgac       240
     caccccaaaw gctgaggacc ttgtatcgtt acatgaactt tttaagtttc agtcgctgca       300
     gttttcccaa ctaatggaca cggtgaagca gctcttggag gacaggcaac tcctgcagca       360
     ggccttgctt caacactcca caaagtcgga cgacactggc agcagaaacc ggacggcccc       420
     accgttccgc aagtttgacg ctgscacaga agagtgggtc gagtacaaac tgcagttgtt       480
     ccagcatttt gcggcctaca acattttggg tgatgttcgm aaatcatatt tttttcttgg       540
     gttggcgtag atatattgcg catttgcatc aagctctttc ctcatactga acctgaatca       600
     gttcctttcg ttgacctcat tgcagcgcta gacaagtatt ttgaatccca ggtgttggtt       660
     gccgccgcgc ggtacaaatt ctttcgcacg aaacgccaac ctacgcagtc ttaccgccaa       720
     tggcttatgg aattaagggg catgactcgc gcttgcagat tcgaatgtac ctgcggtcag       780
     tcttacaggg acgccatagt tcaaaatgtc acggattcca gactcagggc agaggttctc       840
     aaactgtcag accccactct cgaggatgtc attcgcataa ttgaagccca agaattgttt       900
     gattctgcag agctggaaat gtcaccccct gtggtagcgg ccctggatac acgacagtcc       960
     cagcataaca ggggtggggg ccctttagga cgccgcaaac cgcctacgac gcgccaacag      1020
     cagcaacgta gtggcggcaa actgcaatcc tgccccaagt gctacctctc acacgatagg      1080
     gaccttgtca gtttcgtcga gctaaatgtc tcttttgcaa taaggtgggt cacattcaga      1140
     ccgtgtgctc taagaaatta cggagacagt ctgcaaccac agccaatcgc tggtcggaag      1200
     caatggatgt caatcaagtt gaccttgacg atgccacact cctcaaccag tcggtgtcgg      1260
     acgaacacga accatttcag acctgttata gtatttccac agagcatgcc ccatccgcag      1320
     atggcccaca gcgcccttct aagttagtac gkgaaccaaa gaaaattttc attcagctgc      1380
     gaatttgggg ccaggacgtt aacttccagt tagatactgg ggcttccgtt accttagtca      1440
     acagatgcac attcgagaaa ctcggctccc cgccacttga gacttctgct cagaccctca      1500
     ccacgtacaa tggagattac atcgctgtcc ttggcaggtg ttcccttccg atgcaataca      1560
     gaactaccac caagatgatt ccagtcacmg tcctccaagc ttatgagagc cccaacatct      1620
     ttggcctcaa cgcctttgat atttttggcc ttcagatctc agacaatgtt gccactatcc      1680
     attcccacgt cctccacgac agtatcagga aattatgtga tagataccca cggctttttg      1740
     aagactcttt gggtatggcw cagggtttct tcgcgcacat caccttgaag gacaatgcgc      1800
     aaccggattc ttcaaggccc gagaggttcc ccatgcgatt cgggatgagg ttgcagcaga      1860
     gctgaaacga atgcaagagt tgggagtcat cgcacccctc tccgcaagcc gttgggcatc      1920
     acctctcgtc gtggtcagaa aaccgaacgg tcagcttcga ctctgtgcag actttaagtc      1980
     tacggtgaat gcacagtcta ttgtggattc ctatcctctt cctcggcctg aacagctcat      2040
     ggataaattg caagggggtg tctttttctc gaagattgat cttaaagatg catatctcca      2100
     acttccattg gacgatgcaa caaaatcctt cctcgtagtc aacacccata taggactgtt      2160
     ccagtaccag cgtttacctt tcggcagtgc gtctgcaccc gccatcttcc agcgattctt      2220
     agagcaactg actgctaagg tcccctcctg ctccaattat ctggatgaca ttgtagtctc      2280
     aggccgcacg ccagatgagc atcttcgaaa cctggaatgc ctcttcaamg ccctctctga      2340
     tgcaggactc agatgcaacc gggagaaatg tgaatttttc tgcaatcaga tcgaatacct      2400
     tggtcatgtc atcgactcaa acggcatcag gcccacctcc agacacctgc aggccatccg      2460
     ggagcttcct tctcccaaga atgtcactga gctccaagca ttccttggaa gatctcctat      2520
     tatcttcgct ttataccaaa tgctgctcag attgcggcac cgttacatca cctccgtcgg      2580
     aaaaatgtcc ccttccattg gtcgacccca caggaaactg cctttcagac tttgaagaaw      2640
     atcctgctta gtgacagatg cctagtccat ttcgatccat caaaacccat ggtcctggca      2700
     gtggatgcgt catcttatgg cattggagca gttctctccc acaggttcgg ctccactgac      2760
     cgcccaatcg cctttgcttc caaattgctt aacaaagctc aagtaaacta cagccaacta      2820
     gagaaggaag cactggctat catatacggc gtctccaagt tccaccagta cttgtatgga      2880
     cggaaatttt tcctgctgac ggatcataag cctctcacta gtctattcca cccagcaaaa      2940
     cctgtgccca cacgaacagc tcaaaaactc caacgttggg ccctcatcct agccaactat      3000
     aactatgaga ttctttatcg ccccacagcc agccatgcga atgcggatac tttatctcgt      3060
     cttcctgtcg gatcagacac ggcgtttgac tcttctgagg acgcctgctt tcatattgac      3120
     cagatcgatg aggctactgt ggacaacttt cctattgatc acacttgtat cgctgcggcg      3180
     acagagcgag atagtacact caagctcctt cggcaattca tcctgactgg ctggcccacg      3240
     gataaaaagc agcttcccaa tgagtctctt cgacgttggt tttctcagcg ccacgccttt      3300
     tccgtccaaa ggggagttat cctgttacac acaccaaatg aacaaactcg ggttctcatc      3360
     cctgcatcac tgcagcgccg agtcttggaa ttactgcata aaggacattg gggcattgtc      3420
     cgctcaaagc agttggcacg gcggcactgc acatggttgg ggatggacag ggatattgaa      3480
     aatatgatcg ctaactgcag agaatgcgct gaaaatcaac ctgcgcctca tcaacagttt      3540
     ttcaactggc cgcaaccaga cgccccatgg caacgcgtcc atatcgattt tgcaggtcct      3600
     ttctggggat cccgatggct tatagttgtg gacgcgtatt caaaatttcc tttcgtggtc      3660
     cccatgactt ccacaacgtc agccagcacg attcgtgctc tcgcaactat atttagccaa      3720
     gaaggtctcc cgtccaccat agtgtctgac aatggaccac agctgacttc ctcagaattt      3780
     gcttctttct gtaaggccaa tggcatcatg cacatcacat cagcaccttt ttcgccacag      3840
     tccaatggcg aagcagaacg ttttgtgcga acgtttaagg ctcagatgac aaagctcagg      3900
     cagtctcact caaaagaaaa tgctctgctc ttgtttttat caacataccg cacgactcct      3960
     cagggggata agtcaccggc tgaacttctg catggcaggg cacatcgtac tactctgcat      4020
     ctcctccatc ctccacagtc tcctatggct ccttcaattc ttcccacgaa attccaggcc      4080
     accgacaaag tgtacttccg ggtatttaac agamgtcatt cgtgggaact gggtattgtt      4140
     gtcagacctt tgggcagggc aacctatgtc attcgggaca gttcaggacg cactcaccac      4200
     agacaccaga atcagttgcg ctcccgcaca atccccgatc ctgccacaga cctttctgtt      4260
     ccaggccaag ttccagtcga caattccgcg cttgggaacc ccctccagag ggtttcgtcc      4320
     cagtcaccag gcacctcggg cgggcccccg cacatccgct gtcgcagccg acaccaccac      4380
     cggcgccacg gctgtctcac cctgcccgac cacggctcca gtcgtcgcca cccggagctg      4440
     caacctcggt cgtccttctc tgggacgtca cctccctcac ctcagccgac tccgcgatca      4500
     gctcaagcgc agctgcagtt gtcttcagct cccatgacgc ctatggacct ggacccccca      4560
     ccatctccca gggatcacgc ccccttcgtt gggcaggatg cacttcctgc ctccagcgtt      4620
     tcttctgttc agtgggggca cccacgccat ggagctagat gcagcacaac cgtgcccaga      4680
     cccggcttct ggtctggctg ctcgtccttc gcccagccag acatccccgc cgccatggcc      4740
     ggcgcggggg gagg                                                        4754
//
ID   Gypsy-37_LMi-LTR repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-503
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 503 BP; 93 A; 172 C; 129 G; 108 T; 1 other;
     tgtgatatcg tcaatgcccg caccgtggcg ccggccgcag gtctcccgcg ccgtggcctg        60
     cagagggcgc cgccctcccg ccggcgcatg cgcagccccg tacagccaga cagcgccggc       120
     acatagagtg cttccgcgac tccatggcaa ccgcggccgg cgtcgcctcg caatgtagct       180
     ctccgctgag gccgcaccaa tcgcgagctg acacgccaca gctgackcgg ttatggcggg       240
     cgtattccta cgccacccgg cttttataag cccacgctcg accgcatccg gcagtctcgt       300
     gctgatcgtc gccttccacg ctatcaggac gccacgctac cttcaaccga ctcgattagg       360
     actctgttat ggacttcact ctgctgcctg ccaccgacaa accttgtgtt acagattgtg       420
     ttaccacact tgttggaaat aaattgtgtt ttggttaagc ccacgcctca tgttaattgt       480
     tgtgtgccac attggataca aca                                               503
//
ID   Gypsy-37_MoPha-I repbase;    DNA;    INV; 10206 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-10206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1115-1115 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1549
FT                 /product="Gypsy-37_MoPha-I_1p"
FT                 /translation="MAHNTRSQSSRASSESGELSQVELEHISRKIADKEKL
FT                 ILEQAQALKIRQNELDKREANLNKEKNAAVGIDGLSAVLNTLRQEIASLKI
FT                 LPQQVEQLSQRVNDLSALPNPEVSLGSPQRGTSPRNPDVNPGSPVRSTHSS
FT                 SDFTPPIRFKDVVDSIPRYDGHKPPVFQFCKICERALKLIPSQQEQYLVQL
FT                 IINKLHGHAYTAVEGMNFSTIISLTQHLKKIFGPNKSLNQYRGELGNLYML
FT                 PNEDIFSYIERTKELRSAIIDGEMNLYGTLLSQDEDRIDQDILESFINGLP
FT                 TDLLVRVRLEGHYGNLDGAIACTIQLSKTLEAEARRKRHSCPIKSNSAPRV
FT                 DFANRPAQNLHSFERRNDPPPQPRPLNSSIAPFIKPLIPGQPGPNAPIEKV
FT                 CKYCKHAGHLINECRKLAYRRSLENASGTSTYRPGNAMSVPENQGVRRDAS
FT                 QTGRQTDTKTVRFQQTPTSIPTPSS"
FT   CDS           1360..5529
FT                 /product="Gypsy-37_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSEISIPSFSRKCIWHFNVSAGKRDERSGKSGRPPGC
FT                 EPDRAPNRHQNRAFSANPYVHPHSIELNKEFNYSKAPVIILSSPSLSFNCT
FT                 FMIDSGADVNLIKIGCINPLVTIDRCNNTSLQGISSNSVTTLGSCYIQILG
FT                 RETEFQVVTDDNPLPQHGVLGSAFLQDHNAILNFKNKCLVYNDSHIPFAES
FT                 TSMLLQPRSVNPFYCYIANPETKTGYIPPQEIENGIYLGDAIVTNSKGKAY
FT                 LPIFNTTEQSLQVEIPAVVLQEYDTFDTLDSSPGVAEATTGLRVDSSPSAN
FT                 FYDVEEVPSDTQEGHCKTNSSCNPIAPREQALINVLYNNFNISATELPGNR
FT                 VDSILQLLRTDHLNSEEKDNLVTLISKYPERFHLPTDHLGYTNAATHSIPT
FT                 INEVPIHTKQYRFPPIHKEEINKQVDSLLKDDLIEFSTSPYNSPLWIVPKK
FT                 PDSMGNKRWRMVIDYRALNEKTIGDAYPLPNITDILDQLGNAKYFSVLDLA
FT                 SGFHQIPMEPKDAPKTAFSTPYGHYQFKRMPFGLKNAPATFQRLMDNVLSG
FT                 LQGNELFVYMDDIVIYARSLQEHEIKFERLMTRLKEANLKLQPDKCEFLRK
FT                 EVAYLGHIIGSDGVKPDPNKIKAITNFPRPRTAKNIKQFLGLVGYYRRFIP
FT                 QFSKIAKPLTDLLKKDKQFVWLDGQIEAFNALRKSLCTKPILQYPDFTQSF
FT                 ILTTDASGYAIGGVLSQGKIGKDLPIAYVSRILNKAEQNYSTIEKECLSIV
FT                 YCTNHFRPYLYGRKFTIITDHKPLVWLHSIKDPSSRLWKWRTKLAEYDYNI
FT                 QYKKGSLNNNADALSRNPPPATMLPLSTRNPSHLYFPGERLTLPENQALTI
FT                 EKVDDNSIEYFSPESETENEDDDELDILSLADSVPIGTQNENETNIRLNIV
FT                 NSRENLLKQQDNIVIFIYADGTPFDNGAKELIQAELLPEYCDIMYERAKVT
FT                 SFKNRTLIALPIKLDNKTLITVDNVKNCMRTLLDVITELQLGSFSIRRTGN
FT                 LDEIPWSYIQKQLTRYFSEIPINITICRDLIRTPEISQRIPLITESHSSAV
FT                 GGHKGVTKTYNRLRPHYYWNTMKKDIQDFIRKCRQCQLRKLTRVKTKSPMI
FT                 ITDTPGSAFDKVSLDIMGPLPITNNGNVYILTMQDLLTKYSVAVPLREATS
FT                 SSIADAFVKNFICVYGAPKAILTDQGTNFLSSLIKKLTKKFNITHFKTTAY
FT                 HPQSNGSLERSHHVLTEYLKSFITRNNEWDEHVALAMFSYNTSVHESIQYS
FT                 PFQLIFGRIPRTPSSHPPLEEETNETYERYLTDLFNRLQDTQEEARNHLVK
FT                 SKQRSKQYYDKRVHPYKFNTGDQVFLLKEPRRGKFDDQYTGPYKILEILPH
FT                 NNAKLLVRNKPRVVHLDKLKLAHIDPG"
FT   CDS           8170..10194
FT                 /product="Gypsy-37_MoPha-I_3p"
FT                 /translation="MLFSTLFLFVPSVYGLVGFDCGGQHMNITSVSLLGVG
FT                 DCELTYHTPNHTDVYIQLLQLSEYNYAEVIQCKVEISRTVQRCGWNSHVSS
FT                 VINGRMEYLLEVGYPKCLRMFQDGVLTVGTSGPIDGLKPNSTTARSIMLAG
FT                 TLDPDGTCHGTQYSDPYGTWEKVFVDAIVRISLKSSYVPVHLNSGKIILKS
FT                 GTVCTLSDGFCIDSEDGHTFWKPMPTSSCNFHQYDVLYEGQATKTSDTSVS
FT                 SSPTVYSLTTEEITFALTKTREQPLCGYTLLRTEHPKLFILETTKDNAFAK
FT                 RGAIPVNNLDIFTYVNSKFVYVEKHIRSQLHSLYYNVMQQRCELEKEVLKN
FT                 TLSLATLQPDEFAYKLMRGPGYMAVAAGETIHIVKCIPVDVTIRRTEECYS
FT                 ELAVTVRNVSLFMTPKSRIITRTGTQRDCSFEVPVMYHIEDTWIQFTPEPH
FT                 VRQMPPQQLKPLTSLTWKYATPGPLAISGIYSQADIEKLRDHIMFPAEKPA
FT                 LLNIMARGLSGHTIQDGAVSIYNLLDEASLKKIAESTAARIWGGFITFGSA
FT                 TAGVLGVLITVRLIKLAIDVAIHGYALHSAYGCSLFVLGAIWSSLTNLLLY
FT                 LAGKTTKVVNKETSADPVNALPSPTNDSRDAENTNARSTTVTSVNTYEPIP
FT                 VIYTDLNERLRSIEQISPKTIEIRSK"
XX
SQ   Sequence 10206 BP; 3227 A; 2409 C; 1818 G; 2748 T; 4 other;
     gtagtggtct taattttggt ggcagcggtg ggatatgaaa tttggaagtt gcctgtgaaa        60
     accgagtaaa gacastttta ttgaatatct ttcacacaaa tccctttaat aaattcattt       120
     ttctttacac cttttaaaaa tggctcataa cacacgatca caaagctccc gtgcttcctc       180
     tgaatccgga gaactctccc aagtcgaact agaacacata agtagaaaaa tagcagataa       240
     agaaaaatta attctggaac aagctcaggc tttaaaaatc agacaaaatg aattggataa       300
     aagagaggcc aatttgaata aagaaaagaa tgccgccgtt ggcattgacg gactaagtgc       360
     tgtattaaat acattaagac aagaaatagc ttctctaaaa attttacctc aacaagtcga       420
     acagctttct caaagagtca atgatttatc agcgttgcca aatcctgaag tttctctggg       480
     atctcctcaa cggggtacat cgcctcgtaa tcccgacgta aatcctggta gtcccgtccg       540
     ctctacacat tcctcctccg attttacacc gcccattcga tttaaagatg tggtagactc       600
     cattccgcgc tatgatggac ataagcctcc tgtattccaa ttctgtaaaa tttgtgagcg       660
     tgctcttaaa cttattcctt cccaacaaga acaatattta gttcaattaa ttattaacaa       720
     acttcatggg catgcataca cagccgttga aggcatgaat ttttcaacca taatttctct       780
     gacacaacac ttaaagaaaa tatttggccc aaataaatct ttaaatcaat acagaggaga       840
     actcggaaat ctatacatgt tacctaacga agatattttc agctacatag aaagaacaaa       900
     agaattaaga tccgctatta tagatggtga aatgaattta tacggcacac ttctttcgca       960
     agatgaagac cgaatcgatc aagatatact agaaagtttt attaacggat taccaacaga      1020
     tttattagtt cgcgttagac tcgaaggcca ttacggaaat ttagacggag ccatagcttg      1080
     taccattcaa ttatccaaaa ctttagaagc agaagctcga aggaaaagac actcttgtcc      1140
     aatcaaatca aattctgccc ctcgcgtgga ctttgcaaat cgcccggcgc aaaacctcca      1200
     ttcttttgaa cgtagaaatg atccgccccc gcagccaagg cctttaaatt cttcgatagc      1260
     gccgtttatt aaaccactta ttcccggtca accaggacct aatgctccta ttgaaaaggt      1320
     gtgcaaatat tgtaagcatg ctggacatct tataaatgaa tgtcggaaat tagcataccg      1380
     tcgttctctc gaaaatgcat ctggcacttc aacgtatcgg ccgggaaacg cgatgagcgt      1440
     tccggaaaat cagggcgtcc gccgggatgc gagccagaca gggcgccaaa cagacaccaa      1500
     aaccgtgcgt tttcagcaaa cccctacgtc catccccact ccatcgagct aaacaaagaa      1560
     ttcaattaca gtaaagctcc agtaataatt ttgtcttctc cgagcctaag tttcaattgc      1620
     actttcatga tcgattccgg tgctgacgtg aatttaatta agataggatg tatcaatcct      1680
     ttggtaacta tcgatagatg caataataca agcctacaag gaatctcttc taattcagtg      1740
     accactctag gatcctgtta cattcagata ctcggaagag agaccgaatt tcaggtagtc      1800
     accgacgaca accctctccc gcaacacggt gtcttaggaa gcgcattctt acaagatcac      1860
     aacgcgatac tcaattttaa aaacaaatgt cttgtctata acgactcaca tatacctttc      1920
     gctgaatcaa cttctatgct cttgcagcct cgttcagtaa accccttcta ctgctatatt      1980
     gcaaatcctg aaacaaaaac aggttatatt cctcctcaag aaattgagaa cgggatctat      2040
     ttaggtgacg cgatcgttac taattcaaaa ggtaaagcct accttccaat ttttaatact      2100
     acggagcaat ctcttcaagt ggaaatccct gccgtagtcc tacaggaata tgacacattt      2160
     gataccctgg attcctcccc gggtgttgct gaggcgacca caggtcttcg tgtcgattcc      2220
     tctccctccg caaacttcta cgatgttgaa gaagtcccct ctgatactca agaaggtcac      2280
     tgtaaaacaa attcttcttg taatcctatc gcccctcgag aacaagcgtt aattaacgtt      2340
     ctatataata actttaatat ctctgctacc gaattgcccg gtaatcgcgt cgattctatt      2400
     ctacaattat tacgaaccga tcatcttaac tccgaggaga aagataattt ggtcacgtta      2460
     atttctaaat atcctgagag atttcacctt cccactgatc atctgggata cacgaacgct      2520
     gcaactcatt caatccccac tataaatgaa gtaccaattc acacaaaaca atatcgtttt      2580
     ccccctattc ataaagaaga aattaataaa caagtcgatt ctttactcaa agacgacttg      2640
     atcgaattct ctacttcccc ttataattct cctttgtgga tcgtccctaa gaaacccgat      2700
     tcaatgggta ataaaagatg gcgcatggta atcgattatc gagctttaaa cgaaaaaacc      2760
     atcggggatg cataccccct tccgaatatt accgatattc ttgaccaatt gggaaatgca      2820
     aaatatttct ccgtgctaga cttagcctcc ggctttcacc aaatccccat ggaaccgaaa      2880
     gacgccccta agaccgcttt ctcaacacct tatggtcatt atcagtttaa acgcatgcct      2940
     tttggtctta aaaatgcccc cgccacattc caaagactaa tggacaacgt cctttccggc      3000
     ctgcaaggta atgaattatt cgtttacatg gatgatatag tcatctacgc acgctctctc      3060
     caagaacacg agataaaatt cgagcgccta atgacacgtt taaaggaggc taatcttaaa      3120
     ctacagcccg acaagtgcga atttttgcga aaggaagtag cttacctagg gcatattata      3180
     ggatccgacg gagtcaaacc agatccaaac aagatcaagg ccataacgaa ctttccacgt      3240
     ccacgaaccg caaaaaacat caaacaattc ctggggctgg tcggctacta ccgtcgattc      3300
     attccacagt tctctaaaat agcaaaacca ttaacagatc tattaaagaa agataaacaa      3360
     tttgtatggc tagacggtca gatagaagct tttaacgctc ttcgaaaatc tctttgtaca      3420
     aaacctattt tgcaatatcc tgactttact caatctttca ttttgactac cgacgcatct      3480
     ggttacgcca ttggtggcgt actcagccaa ggtaaaattg gaaaagactt acccatcgca      3540
     tatgtatcga gaatcttaaa taaggcagaa caaaactact cgaccattga gaaagaatgt      3600
     ttatccatag tttactgcac aaatcatttc cggccgtacc tgtatggtag aaaattcaca      3660
     attataacag atcataaacc actagtatgg ttacattcta ttaaagatcc ctcttccaga      3720
     ttatggaagt ggcggactaa attagcagag tacgactata atatacaata taaaaagggt      3780
     agtttaaata acaacgcaga tgctctatct cgaaatcctc ctcctgccac aatgttacct      3840
     ctctcgacca gaaatccatc tcacctttat ttccctggcg aacgtttaac actccccgaa      3900
     aatcaagcac tgaccattga gaaagtcgac gataactcta ttgaatattt tagccccgaa      3960
     tctgaaacag aaaatgaaga cgacgatgaa ttagatattc tatcacttgc ggattctgtc      4020
     cctatcggaa ctcagaatga aaacgaaact aatatacgat tgaacatcgt taacagtcgc      4080
     gaaaatttat tgaagcaaca agataatatc gtgattttta tttacgcaga cggtactcct      4140
     ttcgacaacg gcgcgaaaga attaattcaa gccgagttac taccagaata ctgtgacata      4200
     atgtacgaaa gagctaaagt cacgtcattt aaaaatagaa cattgattgc tttacccata      4260
     aaattagaca ataaaacact aataacagtc gacaatgtaa aaaattgtat gcgaacattg      4320
     ttggatgtta taactgaatt gcaacttgga tcttttagta ttcggagaac aggaaacctt      4380
     gatgaaattc cctggtcata tatacaaaaa caattaacgc ggtattttag tgagatacct      4440
     attaacataa ctatttgtag agatttaatt cgtactccgg aaatttctca acgtatacct      4500
     ttaattactg agagtcattc ttcggctgta ggtggacata aaggcgtcac caaaacgtat      4560
     aatcgtctcc gccctcatta ttactggaac acaatgaaaa aagacattca agattttata      4620
     cgaaaatgtc ggcaatgtca attaagaaaa ttaactcgcg tcaaaacaaa atcacctatg      4680
     attattaccg acactcctgg ctcagccttt gataaggttt ccttggacat catgggaccc      4740
     ctgcctataa caaataatgg caacgtgtat atcttaacaa tgcaggactt attaactaaa      4800
     tactctgtcg ctgtcccatt aagggaagcc acctcgtcgt ccatagcaga tgcttttgta      4860
     aaaaatttca tatgtgtgta cggagcacca aaagcaattt taaccgacca aggaacaaac      4920
     tttctctcct cattaattaa aaaactcact aaaaaattca atataackca ttttaaaact      4980
     acagcttacc atccacaatc taacggttct ctggaaagat cccaccacgt cctcacggaa      5040
     tatttaaaaa gcttcatcac acggaacaac gaatgggacg agcacgtagc attagccatg      5100
     ttctcttaca acacgagtgt ccatgaaagt atccaatact ctcccttcca gctaatattc      5160
     ggccgtattc ctcgcactcc aagttcccat cctcccctgg aagaagagac aaatgagaca      5220
     tatgagcgat atttaacaga cctgtttaat agattacaag atacacaaga agaagcaaga      5280
     aaccaccttg taaaatctaa acagcgtagc aaacaatatt atgataaacg ggtacacccg      5340
     tataaattca acaccggcga ccaagtcttt ttactaaagg aaccacgaag aggaaaattc      5400
     gacgaccagt atacagggcc gtataaaatt ctggaaatcc ttccccataa taatgctaaa      5460
     cttcttgttc ggaacaagcc ccgcgtggta cacttagata aacttaagct agcacatatc      5520
     gatcccggat aaactaatat gattttgttt tacaggtatt cttgttcctt gagccgagct      5580
     cattttccac aactcaccaa accacgatct cgctaaatca acggcgtggg attacacgtg      5640
     gtcttatgtc aacacttaca gtagctatta ctccaagttt tcgacatcga taattcggac      5700
     tctttaaata cttttaaata tatcttgact aactatataa tagtcatact tagttataat      5760
     caactcatat tctcgggcgt tataagttct attagagcat gaataataga atcacaccga      5820
     caaatcagag cgtccccaac cttttaacac taggtactga aaagtgcctt tcttctgtca      5880
     cgattcttca ctcgtctcag ccagtcgctt gctgtctacc ttgtttttat aactccgatt      5940
     tgattggtaa aacctccgtt ttccgggtcc tgaacaccca tcttcttacg aacggtccat      6000
     ataatccgtg gtgctgcgtc ttctgcaaaa attttacgat taaagtaaga cgggccagtg      6060
     aatgctcttg ttgcttgaat aattactcta aggtagaaga acgattagaa aagaaaggac      6120
     tcgacattaa tagtacatat tatctatttg ataacgttga ggaagagctc ttacacaccg      6180
     ccccatttct cctcactcat aacaaggaag agtgaaatgt ccgaaactaa tcctattgca      6240
     gataaatgtt tgttgactgc ccgagtcttt agagaagacg ttcataaata tctgtgcgtc      6300
     tcctgtgacg ttaacgcccg cttacgaaat cccataaatc agcgagaacc aaccgacctt      6360
     tcagtaaaac attatcttgc gcgaggatta cgcgtacgtt accgttgcga ggaatgctta      6420
     aaggttatca ctaaagaaaa accagtcgag gaatgctcag tttgttatgc taagcacact      6480
     aaattgatca caaaactcga cgccgaagga gctcagaccg gaagcacacg atttatgtac      6540
     aacgtacact ctgacaaatt tgtatactta tatatatagt cctgaaatag ccgggaccgc      6600
     aaatgtaaca caaacgataa tctcggtcta atatgcttaa cgacaactag aattgttaac      6660
     aagtctaccc agctcaaata acgattcatg ggaatgtgcc ctgctaatcc gaccctgcgc      6720
     tctttttccg gtccagtcga accaagtctg catgaatatt ttgaatggat cagcagcgcg      6780
     caatgtaccg cgtccctatt ttataagcat cgcatcgaaa aggaacattt tctctgcgat      6840
     aactgttact tgcgagctgc cccggaaacg cgcgcgttct atgaattaaa actacgacac      6900
     tatatccaca ttggatatgg agattgtcgc gaacattgta ctctttgcaa cgtattgtta      6960
     gccactcgca gcgctctata cgagtgttcc gtctgcatcc gtgtgttcga aggatactta      7020
     cgccacatcg aacaaaacga cgacatccca tccaaccttg aagaagctac catagtagcc      7080
     atctcggaag accgtgtctg ctaaattcaa attgccatcc tcagtccttt tccacaattt      7140
     tagtcgtcag gcgtgtattc tttccacacg taacggagcg tatattcgca cgcgctgctt      7200
     cgtaatggcc gaatgcacga acgaagtgca gacttccgac cwtcttggtg gaatgtgcct      7260
     aacgtccacc aggatcgtca acaaggctaa tcatcgacct atatgcctaa agtgttttag      7320
     ccagattgtt ataagtacta acgaatataa amtaattatt actcaccact taacgaacgg      7380
     tcctttcaag aaacatcttt gcatgttctg taacgaggat gtcgtgaaat cacgcccttg      7440
     tgaggagtgt tcgcgatgca cccaaaaata cacagacctc ctaaagataa acgcaaacgt      7500
     tagatgggga aacgtgattt tccttttcga tattttctcg gacaagttcg aaaaaataaa      7560
     aattaaatta tagaatgtca aaagacaaga tattaacaaa cctttcaaag gcaagatgcg      7620
     tcagggtagg cgcaatgatc catcgagaaa ctttggaaag gcattgttta aaatgcttca      7680
     cgctcctcac aaacggactt gatgatcacg ccatgactca tcgacattac ttggtcaagg      7740
     gaccgtacga ttttcgttgc tccctctgta acaaaaacct aaccgttaac aaacgaattg      7800
     aagattgtaa aaaatgcttc gacgaatgcg ctcacagatt agcggaaatg atcccgaagg      7860
     atcctatctt tgaacaacga aattattact ttgaccatta ttatcaaaca cttagataca      7920
     cataattaag tattgcgtat agcttacata tgtaatcaac cattatatat atatatatat      7980
     atatatatat cttatacaca tatacatatc taattattgc atatatttca tattatatct      8040
     atatatatat aaccactgca tatatcttat atcaaactat attatatata tataattaat      8100
     cgttatgtat atcgcttctg caaattatgt attctttaac cacgtataat tatatttgta      8160
     ttgcagataa tgttattctc taccttattt ctttttgttc cctccgttta tggacttgtc      8220
     ggatttgatt gtggagggca acatatgaac attacctctg tgtctctgct cggtgttggt      8280
     gattgtgaat taacatatca cacccccaac cacactgatg tctacatcca gcttctccaa      8340
     ctctcggaat acaactatgc tgaggtcatc cagtgcaagg tcgagatctc taggacagtc      8400
     caacgctgcg gatggaactc ccacgtttcc tctgtaatca acggacgcat ggagtatctc      8460
     ttagaagtcg gatatcctaa atgtctacgc atgtttcaag atggagtact taccgtgggt      8520
     acctctgggc ctatcgacgg attgaagccc aactccacca ctgctcgcag tatcatgctg      8580
     gcaggaacct tagaccctga tggcacctgt cacgggacac aatactccga tccatacggc      8640
     acctgggaga aggtcttcgt cgacgccatc gtccgcattt ccctgaagtc ttcgtatgta      8700
     ccagtgcact tgaactctgg aaaaatcatt ctgaaatcag gaaccgtttg caccttaagc      8760
     gatggtttct gcatcgactc cgaagacggg cacacattct ggaagcctat gccgacttcg      8820
     tcctgcaact ttcaccagta tgatgtccta tacgaaggac aagctactaa aacgtctgac      8880
     acttctgtct cctcttcgcc tacggtttac agtctgacaa cagaggaaat caccttcgca      8940
     ctaacaaaaa caagggagca gcccctgtgc ggatacacat tgctgcgcac agaacaccct      9000
     aagctgttta tcctggaaac cactaaggac aacgccttcg ccaaacgagg cgctatacca      9060
     gtaaacaact tagacatatt cacctatgtg aattccaagt tcgtctatgt cgaaaagcac      9120
     atacgaagtc agctgcactc attatactac aacgttatgc agcaacgatg cgagttagag      9180
     aaggaagtcc tcaagaacac tctttctctt gccactctac aaccagacga attcgcatat      9240
     aagctgatga gaggacctgg atatatggca gttgctgctg gagaaactat ccacatcgtg      9300
     aagtgcatac ctgtcgacgt gacaatacgt cgtacagaag aatgttactc cgagcttgcc      9360
     gtaacagtac ggaacgtctc actgtttatg actccaaagt cacgcattat tacacggact      9420
     ggaactcagc gtgactgtag ctttgaagta ccagtaatgt accacatcga ggacacctgg      9480
     atacagttca caccagaacc acacgtgaga cagatgccac ctcaacagct gaaaccacta      9540
     acatcactaa catggaagta cgccactcca ggaccactcg ccatcagcgg gatctactct      9600
     caagccgaca tcgaaaagct gagggaccac attatgtttc ctgccgagaa accagcttta      9660
     ttaaatataa tggcccgtgg actatccgga cacaccatcc aggatggcgc tgtctctata      9720
     tacaacctcc tcgacgaagc ctcgcttaag aagatagccg aaagtactgc tgcccgaatc      9780
     tggggtggat tcattacctt tggatctgct acggctggag ttcttggcgt gctcatcaca      9840
     gtgcgcctca tcaagctggc gattgatgtt gccatccatg gatacgcact gcattccgct      9900
     tacggatgca gcctcttcgt cctaggagct atttggagct ctctcaccaa cctgctgctc      9960
     tacctggctg gaaaaacaac aaaggttgta aacaaggaaa catcagctga tcctgtcaat     10020
     gccctgcctt cccccaccaa cgacagccga gacgcagaga acaccaacgc ccgctccaca     10080
     accgtaacaa gcgtaaatac atacgaacca atacccgtaa tttacactga cttaaacgaa     10140
     cgtttacgga gcatagaaca aatctctccg aaaactatcg agattcgttc taaataaggg     10200
     gggggt                                                                10206
//
ID   Gypsy-37_MoPha-LTR repbase;    DNA;    INV; 2428 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-2428
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1201-1201 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2428 BP; 727 A; 606 C; 443 G; 651 T; 1 other;
     tgtaacgtcc cagcgtccgg aaaattttgt ccaaaagttt tctcgcgaaa cttgtccaga        60
     tgcatgcgcg ctgagttacc ttactcagta atacgtttct atggctcatt cttactttcg       120
     tttaagtcgt cattatataa taataataat tcaaatatta agcacttaat cgtactttaa       180
     aattacgtac atatatatat caaaatcata tattacatat atgtatactt taagttatct       240
     ggcattattt taactctctt atcgatacga acgcataggc aaccggatcg tttaaacttc       300
     taaattctta ctctcgtatt gcttatgggt tcgtcgagga ttaattaact gtaagataaa       360
     taagaaccgg atatttgtaa aggcccttgc acgtgcactg tcggatgatt aaagaaatga       420
     tatctcgtca actgaatcct caaagattca aacggaacgg ttctaaaaca aaatctgcta       480
     ttatcaacac gacggcgaca ggatgtcgcg cctaaagaaa tacaatacga aattaatccg       540
     cgtaatatcc ggactgcgtg tcggaagatc aggtgaacca tagctaggca tttaacataa       600
     acagttcgta agatatatcc atttcacgtt ggcgacgaga tgtcgcgccc aagaaataat       660
     taagattgat aaaccggcga gatatttggt agtgaaagcg atcctagccg aaaagtatcc       720
     cggatcaaat gatcgacgaa atcctagacg agatatctcc gataaacatc cgcacacgtg       780
     caaacggtct cacgcgcctt atcagcgacc cccgaaactc ggttcccgcc aagccgccga       840
     atcactccca ctcttaccga ctcttgcgct tcgcgcgtgt tccctactcc ggagcgctag       900
     cggccgctga gcgcagcgcc gattttgctc gatccctttg tccgcgccct atttaaaccc       960
     gcgcacagac gccggatcat tgattaattc attcattctc tcattatttt tcgacactcg      1020
     ttcagtacca attcagcgat taagtcagtc attagttctc ggtcacgcgt cactcttcaa      1080
     tcttcaagtt atctgcaacc tctctcgtac ttcgcgatca actcattgtt aattaagtta      1140
     accagtgcgt gctccgacag actgctacca ccaacatatc tctgcgacca tcttcaactg      1200
     tcaaaccaca tcaaccattt aattattagt ggaccaaact attgcttcaa accatattat      1260
     aactcgtgag tactaattaa ttattgttta ctatcgctcc ctagaatatt ttctgaaatt      1320
     gaactgtgcc atattataaa gaatcctttc gataaggatt aattgtcgac ttcattttcc      1380
     aaataattat aaacaactcc tctaggtaca accctctccc ctcccttgtg ccgcgatgaa      1440
     ttccacaaca cctaaagtga gtagactcag tgattaaaac aatcgtcggt gaaattagaa      1500
     aagccggtat attcgtgctc aacgaaactg tagattccgc tagcgagcgt tccatcgctt      1560
     gccagcgata taagaacaaa accgtagatt ccgctagcga gcgttctatc gcttgccagc      1620
     gatataagaa cgaaaaccgt agattccgct agcgagcgtt ctatcgcttg ccagcgatat      1680
     aagttagtta atcattcaca agcacgaata tactcgacgg ccctaatttc ccttgacgca      1740
     gaaagatgct taactaagcg ttcactcgct taaccaagcg tttatttgta gaccatcaag      1800
     aaaaatcgcc accgcgctgg gaaaaggaaa agagcaaaaa tcctcaaggc tcaacaaaaa      1860
     gccctagagc gggctttcga ggagattgag aatttcgtgg gctacccgct ggaacacacc      1920
     ccccttcctc ctccagtcac agacgctccg ccaggaagag cgatctcttc ccttgatctg      1980
     ttccaagaag acaccgtccc tttggaaaac tataaccagt taacgtctaa cgcgcccgaa      2040
     ataatcacgc ttagcgattc cgatcacgat tctccggagt tggaaccttt agatccaact      2100
     gcggaatacc atagcgatgc agtagcgcag attattatat ttccgccaga gaattaaata      2160
     atacatgtaa taatcctata cgttgtttta ttaataaata tatacatata tatacatata      2220
     tccagattcm ttaatcttaa ctacatcaag gtcatactaa ccaaatccca caaggttttc      2280
     catcggcaac aagctctcgc catacccggg tagagttcgt gtaagcgggc tgcccgaaat      2340
     tcgaaaggag agcccccgcg tcggtcaggc gaccgaggcg tcgcgacgca cacattgaga      2400
     agaaatatcc ctagacccgg acgttaca                                         2428
//
ID   Gypsy-37_MSe-I repbase;    DNA;    INV; 5635 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5635
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 914-914 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1005
FT                 /product="Gypsy-37_MSe-I_1p"
FT                 /translation="MEELTMPNQSNTTKNSEANSNKQRNKRSRSREYLSKG
FT                 SRARRGSSSRGHRSAKSHGRHRSRSRERRRSCSSERRRSRYRERQSRRSHT
FT                 SRGRSRSRRSRSRLSKRCEERRYSRNNCLSVEGDLRSPLPQQQVFQSSINN
FT                 DTVKLLSELITSLGYSRHEGNKFPMLGNVIPEFDPMIKGQTIHMWLGKVDE
FT                 CARLYKWGDDQIIHYALPKLCGVAKTWYQALPTMSFSWPEWKNKLIMSFPS
FT                 SDDYAELLTEMLSKRVKYNESLELYYFEKLIYLIGVKYRVNELLIVYCTAL
FT                 RTDHLD"
FT   CDS           918..4871
FT                 /product="Gypsy-37_MSe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KINLLNRCQISGKRAVDCLLYGIEDRSLRLGAKAAKC
FT                 TEPEQVLEYFQSIKQQHLEKTKLIHNDKRTIASSGNGMLKFSNNGDLRAKT
FT                 QNNSVVCYNCNEPGHFSFKCTKKILKCTLCNKLGHTSINCSKLSSDGNVKI
FT                 DKPNEKSILSIDTGCLNNSKYIIQLKINGNCLTGYVDLGSQCCLIRCSDAH
FT                 RLGISWSINDQLPVMRGIGNSIVVPLGVTSVILEIQNITEQVEFYVVNDDV
FT                 IKYSVLIGHSFTEKPNIIITKTSENLIFERGTSKIDCVVSQGITLNTPMKI
FT                 YVVQVMCPDNYTGSVYVNGTMRGKPNHEFYLLPGEYNMSNGHGSLLVQNVS
FT                 NNSINLEKNILLTRTLRVDRFLNVNVLKLDDSTSADKLNYDETLTVHEVEQ
FT                 LKSLLKQYEKCFSSSLKDLGYTNVTEMVIELENSQPVVYRPYRLAFSERSL
FT                 VRSMVQEMIDAGIVCESRSSYASPILLVKKKTGEKRLCVDFRALNKKTRKE
FT                 HYPLPLIDDQLDTLAGHSLFITLDCASGYYQIPLAESSQDKTAFVTPDGQY
FT                 QFKRMPFGLANAPSVFQRAMNKILPKSKVDFALIFMDDILIPAKSFQEGLS
FT                 RLEHVLKLLLDAGLTLKINKCHFFYKEIDFLGFQVTSCGIRPGSRKTIAIS
FT                 NFPEPRNTHDIRRFIGLASFFRRFVRDFALIARPLTDLLRSNFDWKWETDQ
FT                 KAAFELLKQKLVERPILALYDAMLETEVHTDACKLGVAGILMQRHSDGILR
FT                 AVAYYSRKTTIEEQKLHSFELETLAVIASLKRFRVYLLGLKFKIVTDCNAL
FT                 RTTLTKRDLVPRISRWWIQFQEYDCEIEFRAGNRMGHVDALSRAPVTEPIP
FT                 GDEDCPILDVLNLDLKNWISTVQGADDEIKRIKDILLDPETKRITDVYKNY
FT                 QLKGGYVYRLVENGIRWVVPRAVRWQVLKMNHDDVGHFGFEKTLSRLKAIL
FT                 WFPKMRRFTKKYVAACLECAHHKGPSGRREGMLHPIPKLEIPFHTLHADHL
FT                 GPFVRSRKGNTYILLIIDSFTKFINIQPVRDTKSTTAIKIFKGHFSFFGTP
FT                 SRLITDRGTCFTSAKFKSFINGLGIKHILNAVATPRANGQVERFNRTVLDA
FT                 LGTKCHGKNDNQWDEYVGDIQLGLNTTVNKTTGKSPSELLFGCRLVNSSEN
FT                 ILNDVIIEATDRLTGDDLIKLREETKNRIENQQLVSKERFDKHRKSGTKYN
FT                 VGDLVRVQRTIHDKAHMGQSKKLVPKFYGPYRIVKILDNDRYLIEDTPLTR
FT                 KSNKKYENVVALDKIHPWLVYKNVSPEASESDSSIDDSEETEQNVTNDMAD
FT                 DMDLDK"
XX
SQ   Sequence 5635 BP; 1903 A; 875 C; 1179 G; 1678 T; 0 other;
     actcagaagt gggatgtaca aagctcacaa attacagtgt taagctgtta aaagtgtaca        60
     ttatttacat ttttcataaa aattagaagt gaaagatcaa aattaataga aatggaggag       120
     ttgactatgc ctaatcaaag taatactacc aaaaatagcg aagcaaattc aaacaaacaa       180
     cgtaataaga gaagtcgttc tcgtgaatat ttaagcaaag gctcccgtgc acgtcggggc       240
     agcagttctc ggggtcatcg gagtgcgaaa tcgcatggtc gtcatagaag ccgttctcgc       300
     gagcgacggc gcagctgttc aagcgagcgt cggcgcagcc gttacagaga gcgtcagagc       360
     agacgttcac atacgagtcg tggccgaagt agaagtcgac gcagtcgcag tcgtctgagc       420
     aaacgatgcg aagaacggag gtacagccga aataattgtt taagtgtcga gggtgatttg       480
     agatcgcctt tgccgcaaca acaggtattt caatctagta ttaataacga cactgttaag       540
     ctattgtccg agttaatcac ctcgttagga tatagtcgtc acgaaggaaa taaatttcca       600
     atgcttggta atgttatacc agagtttgac cccatgatta agggtcagac tattcatatg       660
     tggcttggaa aagttgatga atgtgctcga ctgtataaat ggggtgatga ccaaattata       720
     cattatgctc tgccaaaatt atgtggtgtg gcaaagacct ggtaccaggc tttacccacc       780
     atgtcttttt cctggcccga gtggaaaaac aaacttatta tgtcttttcc tagtagtgat       840
     gactatgcgg aattattaac ggaaatgttg tctaaacgcg taaaatataa cgagtcgtta       900
     gaactctatt attttgaaaa attaatttac ttaataggtg tcaaatatcg ggtaaacgag       960
     ctgttgattg tttattgtac ggcattgagg acagatcact tagattaggg gccaaagctg      1020
     caaagtgtac ggaaccagag caggtgctag agtattttca atcaattaaa cagcagcatt      1080
     tggaaaagac gaagttaata cataacgata aacgtacaat tgcatccagc ggtaatggca      1140
     tgttaaaatt ttcaaataac ggggatttaa gagcaaaaac gcaaaataat tctgtagtgt      1200
     gttacaattg taacgagccg ggtcatttta gcttcaaatg tacaaaaaaa atattaaaat      1260
     gtaccctctg caacaaacta ggacatacct caataaattg ctcaaaatta tcttccgatg      1320
     gtaatgttaa aatagacaaa ccaaacgaaa agagtatttt aagtatagat acaggatgcc      1380
     taaataattc gaagtacata attcagttga aaatcaatgg gaattgtttg actgggtatg      1440
     ttgatttggg tagtcagtgt tgtctgatac gttgtagcga tgctcatcgt ttagggattt      1500
     cgtggagtat caatgaccag ttgcctgtta tgcgcggcat tggtaatagt atagtagtac      1560
     ctttgggggt gacttccgtt attcttgaaa tacagaacat cactgaacag gtagaatttt      1620
     atgtggtaaa cgacgatgtt ataaaatatt cagtgttaat tggtcacagt ttcaccgaaa      1680
     aacctaatat aattattaca aaaacaagtg aaaatcttat ttttgaacga ggtacatcaa      1740
     aaatagattg tgtggtcagt caaggtatta cattgaatac gcctatgaaa atatatgtag      1800
     tacaagtgat gtgcccggat aattatacag gttcagttta tgttaacggt acaatgcgag      1860
     gtaaaccaaa tcatgaattt tatttattac ccggtgaata taatatgtcg aatgggcacg      1920
     gatctctatt ggtacaaaat gtttcgaata attcaataaa cttagagaag aatatacttt      1980
     taacgcgaac tctgcgggta gatcgttttc taaatgttaa tgtgttaaaa ttagatgatt      2040
     caacgtcagc tgataaactt aactatgacg aaaccttgac tgttcatgaa gtggagcaat      2100
     taaaatctct acttaagcaa tatgagaaat gtttctcaag cagtttaaaa gatttaggtt      2160
     atacgaatgt aacagagatg gtaattgaat tggaaaacag tcaaccagta gtatatcgtc      2220
     catacagact agcgttttcc gaacgcagtt tggtacggtc aatggtgcaa gagatgattg      2280
     atgcaggtat agtttgtgag tcgagatcat cttatgccag tccaattttg ctcgtgaaaa      2340
     aaaagactgg cgaaaaaaga ttatgtgttg attttagagc tcttaacaaa aagacaagaa      2400
     aagaacatta tcctctacca ttgattgatg accaactaga tacgttagcg gggcattcat      2460
     tgttcattac actagattgt gcctcgggat attatcaaat ccctttagcc gagtcctctc      2520
     aggacaagac tgcatttgtt acacccgacg ggcaatacca gttcaaacgt atgccatttg      2580
     gactggctaa tgctccgtcg gttttccaaa gggcaatgaa taaaatttta cctaaatcca      2640
     aagtagattt cgccttaatt tttatggatg atatcttaat cccagcaaaa tcttttcaag      2700
     agggtctttc tagattggaa cacgtattga aacttttatt agatgcagga ttgaccttaa      2760
     aaataaacaa atgccatttt ttctacaagg aaatagattt tttgggattc caagtaacca      2820
     gttgtggtat taggccggga tctcgtaaaa caatagccat atctaatttt cctgaacccc      2880
     gtaatacgca cgatattcga aggttcatag gtttagctag tttctttagg cgatttgtaa      2940
     gggatttcgc cctgatcgct cgacctttaa ctgatttatt gagatcaaat tttgattgga      3000
     aatgggaaac tgaccaaaaa gctgctttcg aactactaaa acaaaaactt gtagaaagac      3060
     cgattttggc actttatgat gctatgttag aaaccgaagt tcatacagat gcctgcaaat      3120
     taggcgttgc aggtatacta atgcaaagac attcagatgg aattcttaga gcagtcgctt      3180
     actatagccg aaaaactaca attgaggaac aaaagcttca ctcttttgaa ttggaaactt      3240
     tggcagttat tgcttctctt aaacgtttta gagtatatct tttaggccta aaattcaaaa      3300
     ttgtcacaga ttgtaatgca ctgcgtacta cgttaactaa aagagatctt gtaccacgga      3360
     tttctcgatg gtggatacaa tttcaggaat atgactgtga aatcgaattt agagcaggta      3420
     atcgtatggg gcatgtagac gcgcttagtc gcgctcctgt aactgaacct atacccggtg      3480
     atgaagattg tccaatcttg gatgttttaa atttagattt aaagaactgg atttccacag      3540
     tacaaggtgc tgacgatgaa ataaaaagga taaaagatat cttattagat ccggaaacta      3600
     agcggataac agatgtttat aaaaattacc agttaaaggg gggttatgta tataggctag      3660
     ttgaaaatgg aattaggtgg gtagttccac gcgcggttag gtggcaggtt ttaaagatga      3720
     accacgatga tgtaggacat tttggctttg aaaagacatt gagtcgttta aaagctatat      3780
     tgtggtttcc taaaatgcgc cgttttacaa aaaaatacgt cgccgcttgt ttagagtgtg      3840
     cccatcataa gggccctagt ggtcgcaggg agggaatgtt gcatcctatc cctaaactgg      3900
     aaataccatt ccacacatta catgctgacc atttaggccc ttttgttcgt tctaggaaag      3960
     gaaatacata tatattacta attatagatt catttacgaa attcattaac atccagccag      4020
     tcagagacac taaaagtact acagctatta aaatttttaa aggacatttt agcttctttg      4080
     gcactccgtc aagattaata actgatcgcg gtacttgctt cacgagtgca aaattcaaat      4140
     catttataaa tgggttaggt attaaacata tacttaatgc cgtagctact cctagagcca      4200
     atggacaggt tgagcgtttt aacagaacgg ttttagacgc tttaggtaca aaatgtcacg      4260
     ggaaaaatga taatcaatgg gacgaatatg tcggtgacat acagttagga ttaaatacta      4320
     ctgtaaataa aactactgga aagagtccct ccgagttact ttttgggtgt agattagtta      4380
     attcttccga aaatattcta aatgatgtca taattgaggc tacagatcgt ctaacgggtg      4440
     atgatttgat taaattaagg gaagaaacca agaatcgtat agaaaaccaa cagcttgttt      4500
     caaaagaaag atttgacaaa catagaaaat cgggtacaaa atataatgtt ggtgaccttg      4560
     ttagggtaca aagaacgata catgataagg cgcatatggg ccagtcaaag aaacttgtac      4620
     cgaaatttta tggtccatac cgtatagtta agatattaga caatgataga tatttaatag      4680
     aagacacacc gttaactcgg aaaagtaata agaaatatga aaacgtggtt gcattggata      4740
     agattcaccc ttggttagtg tataaaaatg tttcacctga ggccagtgag agcgatagta      4800
     gtattgacga ttctgaagaa acagagcaaa atgtaactaa tgatatggca gatgacatgg      4860
     atttggataa atgacttaaa tgttataatt ataaaactta tattatatac ataaattatt      4920
     gtaccgataa tgatatgaag ttatttaaga tatttaaatg aaagtatata ttgtgaataa      4980
     attgatttga ataaactgta aagaaattgt taatgtagta atgtggagta taattttaag      5040
     tacagtatat gagcgattag taatggagca tagattgtcg tagatcatag cagacagtgt      5100
     tggatagaga gacgattttg actgatcctt cataggctat gagcgactag tgctcaatta      5160
     tagataatcg tagatcatat cagattatga taaatttgta acagattctg attcgatatt      5220
     gagctatgag cggtcaaatc aattgatcgc agatcatggc aaattataat attaattatg      5280
     aatgcagact atgagcgatt agtactgtag catagatggt cgtagatcat ggcagaccat      5340
     gactggtact attagaatag gtacaccttc atgggctatg agcgatcagt gttgcagtat      5400
     agatagtcgt agatcatagt agactgtatt aatgtgaaat gatttgaata gaaattgagt      5460
     tatgtatgaa tagtaaaaaa aaaagcacac tatattgatt ttagataata actttatatt      5520
     gtattcattt attagattaa gcggagtcac tacaaataga ggcatagctt catttttttt      5580
     cttttctatt ctgttttata tgtgagagga ctcacgacat taaggacggc cgagc           5635
//
ID   Gypsy-37_MSe-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-314
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 963-963 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 314 BP; 99 A; 40 C; 58 G; 117 T; 0 other;
     tgtaagcatt atggaagcat aattctaata aaagatatgt ttattatagt atttctaata        60
     tatacattaa ttgtagttta atattgatga tttatatgct tctataatgt ctatttaaca       120
     tcacatcgat ttaaatatcg atatcacatt ttattgtatt ggcaacactg tggctgacga       180
     gtttaccttt taagttgaat gcactgtcgc acgcattcga tggcgaacag tcgccgaggc       240
     aagatctaag agattgaatt atagtgtgta tttgagtggt aatatagtgt ttaattactg       300
     ggttgaaccg taca                                                         314
//
ID   Gypsy-37_NVi-I repbase;    DNA;    INV; 19389 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposon from Nasonia vitripennis, interanl
DE   region.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-19389
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1390-1390 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           16714..18924
FT                 /product="Gypsy-37_NVi-I_4p"
FT                 /translation="TKFNGNIGINITNPQVDHTIKMTAIGVKNENNNNNLT
FT                 QNIVAITALSHRENATTRHRSYRCAASKETNGGITIQAINHNPGLLVEKLN
FT                 PLATSSTSWKMIQRINLETFFSRWNKLLGSLGILKTFCXQINTACPYEQQL
FT                 AKIRQQIEETARNADKVKELLQGHETTQKPRIKRAWFSAIGKISRTIFGTL
FT                 DEEAGEEIQQLISITANDTRQLAKLLANQTELIHTEFGILHEKADELDNAM
FT                 DELIANQANLQKQEEIAEALNLLEDNVIQYELDTEILTDAVLFATQGVVHP
FT                 RFVTPEQIEKSEALAKESVADSRFPSTEADMPITELIKISDVSILFQDMHL
FT                 VYYIGMPLLDYGDYDLYKASALPIKQKSLNASDTFAYIWPETEYFALDQGS
FT                 NAYIPISLDALNKCKKLSKLYICRNTEPVHEINDGASCEIQISTGKTPINL
FT                 SECKIKVMKSRDTFWIRTSTPNTWVFSTNKKERLFSSCKRLTDNTIDIDGV
FT                 GTLRLPHGCTAHTNTVRLVASREVRVNYLTVLFNETELDIASLINSTGNTS
FT                 LAFIKDTLEKEGTAKSLNLRRDMFSRSLKTGRDFRDIIDKAKRLGEYKDIY
FT                 GRFSSLQSTVTYSGTGILTFVIIVVIIWKVLTKRGAPLLNRDRLISGHNTH
FT                 AQLGTERPQMYEARQPEMANQGLPYYLPMQSAGLSLPNLQQLAAANGMLLQ
FT                 PALMPRDSRLNLQMIGAKNNEDNQSRRNIRLSESIF*"
FT   CDS           join(3299..8095,8129..8686)
FT                 /product="Gypsy-37_NVi-I_2p"
FT                 /translation="NLDRLLYHLFQDERFIIPARTRQVIYARASDRSEQVG
FT                 FAPLQNLGEGLYFGNFIGINQEGKIHALCVNTTEHEVELNPPEVTLEACEA
FT                 IKEGGEEFNLEEDEPEETVNILSIFSNESKDRAERIFELLDPETLKDLTEE
FT                 EITHVKEIIREKPHIFGLPGEKLKATTLVSHKIPTTTNVPVRSKGYRPSQE
FT                 EKEELGRQIEQMLKDDIIRPTDSPYSSPTYVIPKKPAADGTKRWRLVTDFR
FT                 KLNEVTVGNSYPIPNTADIIDSVASARYITAIDLRTGFYQIPMDPADAHKT
FT                 AFTVPFGHYCYQRLGMGLKGAPSTFQSLMDLALAGLQGTELYVYLDDIIVF
FT                 ARDLEEHGKKFRRLMKRLDDANLTIEPMKCQFLQREAHFLGHIAGGGKIRA
FT                 DPKKIKAVNKFPVPTNAKKIKQFLGLAGYYRRFIKDFAKSAAILSRLLRKN
FT                 EPFVWKEEHQQAFDKLRTALCEEPVMKAPDLTMPFLVITDASDYAIGAILS
FT                 QGQLGSDQPCAYASRVLKGPELRYSTYDRELLAVVFAKDQFRHYLAGRKFT
FT                 VVTDHEPLKHFFTTKKPDLRFNRLKAELRGYEFDIVYRPGARNGNADALSR
FT                 NPILDEGEENPERPKAELYELADKQEHDATILRFKTTRKRGKSKKLPESAD
FT                 TADKERISTESENSGNPRERKRRVVVYTESTGPDNSSDDEWQPKAGTRNGK
FT                 KRVYKKVHGEKTGKIYPTCHKLSDSRETSEPILSQADPNRVLGKLCKEENM
FT                 RLGVQAASTPQTRGTNYNDDPKRPIRKQTLNRSLPKFHRNDMEISEDSNSS
FT                 LGSDAEDEPLRAGQVEREQEVEISRKLIEKEPSLNRHDLSQPLTPRLTPSS
FT                 NNSHETSRPIPQKTNSEPSNVDPGNKPTSAESPIANLRQTLFGKENKFRTR
FT                 LTVDVEEISKRDKSGVLIKIWESGAQSSNEIPDEKRVNKRNPSAETPYESI
FT                 DSPQPILTTHIPLAPHDSHPSTLKHTLPIYRPRKDFYHITPQIDDQANAKP
FT                 LPESSASEASRGDIDLRLHNMSKHDNTSPIKGGSRHKSVEPMEGSFNDQPA
FT                 TDRTAATMGTSPRAQPTPTPYTGTDLDAIAQRYCVYSQHEDCAEPSKRLTH
FT                 DKNIPMEPPXNCLFNSIIKILNLQMTLSQLRYKLLCSPHVETYGDPEEARR
FT                 ILLSEVEYGDADCIYVFSREFGYNVCVHFQTNNRNNYCHFNLNEGKEFIHL
FT                 HLAGNHFTPYIITEDESDEESESESEQEEQPANFQRNPHVREAMARYLIAE
FT                 ARPEQDSPEWERDPNDKELFTGVQSLNDHPFAHKCNLAYILAEDMILDTEV
FT                 LNALIERRYIHAEELLETQRFVGEIIVTKYREAYMFGIVLKKHLHDKPLRP
FT                 DIAGCIKTLQLLTEKYGITTFGFIRDLGIITLADWEHVIEQCNKTFKGKAI
FT                 SIVLFKNNLPVPKVEDRYRLIKEYHESSIGGHKGTNKTYNRIASEYYWRNM
FT                 QADVRQFVRGCAGCQEKKLVRVKTKLPMLITDTPSHPFDKISIDFCGPMPQ
FT                 TERGNRYILTIQDNFTKFCILVPVEHATAREVTRALTEKLICYFGSPVTLI
FT                 SDQGAHFMNRVMEEFARIFRVNLKYYNDRVLSAQRMHHTLKEYIKMYIKDN
FT                 DNWDEVVPLAXHXYNSRETDAXXXTXRQKXVFXRRARTPSSFPPREHLQTY
FT                 XDXLADTTEAYAQLRTMAAMNLVQSKHRSKYYYDRKLNVQHFREGEMVYVL
FT                 KEPKVGQFKSEYKGPCEIIAINYSTHNAKIQKGDKTRIVNINKLKRYIPEI
FT                 EQEEGTDISMNKK*"
FT   CDS           join(11274..10015,9933..9217)
FT                 /product="Gypsy-37_NVi-I_3p"
FT                 /translation="LDISLIDRLLRYFSXCXFXFFLSARYPRRSRTPIRGF
FT                 VETTSPILNLSGRVAQGVSQFPYNPSAVSNPPAPLPPITSTYPPSFPAGIS
FT                 EERSGSEVSHTPSVYPRATTRDSVATSVCNGGSDLTRENISGWAGYWYNSA
FT                 TVSAPEAIPASTVRSDFHDGALAYTEYFSANLSGSHPVIHDSSFDVTRTNS
FT                 ENYESVFPSAGGLLPPFGSVPSFEVSRAVPPRESLSQDALPHLSMPALGAP
FT                 PERSVVEVDLSNDSSNPSFSMLSNDSFSSSHSAEVVARPSSRLSISNNSGP
FT                 VLVPCPICCDYMFTPIYQCLNGHSVCSFCWDNTTVCAICRGPRGGVRNLVL
FT                 ESLAGEQTQACRYQYLGCRQFLKPDDWTSHARHCSFSPVNTLVRGSPSPVL
FT                 AVSSESAVRSANPRRIVTDSDSDSLFSLSLLQVRPSLRIPYEPGRALVPAR
FT                 PNPDPVDTWVGITPPASPWDVDQPXAQVPSSPTSSVPDDLLGNLFLDSDED
FT                 GVSDDVPGVVAVAESGELAAAQSTSPALPAENPDEAEALLRDLFTCPICDN
FT                 FIYPDFRQCDNGHAVCESCLSRCSVCPVCRGPAPVWRNRLLQGVGSRMHFP
FT                 CRHHHLGCPEVPAADAWSRHSDSCAYRPRPLSPATRRDIDRRTLFTALKLC
FT                 LIYMRLIHI*"
FT   CDS           join(306..842,743..2746,2668..3393)
FT                 /product="Gypsy-37_NVi-I_1p"
FT                 /translation="MAESNPSDYKMSNFNEHNGLETQNIFTREANDPDTFQ
FT                 RRLQEFEMSAEPALLLHTRLTIALQLADVAMAYPSRGMIDTAISHIQGIVQ
FT                 QERLIPTDKIQLLKVAKEHLLQVRDKIELSETNDKTSQQSNLHVTHNNGTI
FT                 PKCKIFNENDPFALDIKEEKLDDYVTDRKQQLFAKTCVSGRKRPIRARYQR
FT                 RKIRRLRYRPKAATIRENMCIGLNSGALDTVNDIYDKKPIFASARNDRVSL
FT                 IDTRHDSNDAPYTEHRGLTFTEQLPADRRLNRSLLGELPDPKNHGLPSIGN
FT                 FFDKLDAEQQPGPQPGDSDFIEQYEQFKKRMQDKVHEDLNSKPSSDPIIRH
FT                 TQNVQQHRDRSRDGGWMFSLHQALNTIPHYDGNPDMLALFCRAVRDVIHEF
FT                 GPESERWVLNSLASKFRGRAADGYTSRLTQYDTVERLLADLTTQYSGVGGA
FT                 DKVLADLKVIRQYAGESAGDYGLRVQTLHNRLLNIYDASRDMRNWERATYK
FT                 NNADKEALEQFLFGLNGELQHQVRSKNPLCLREAITEAVAFEHRTSARRAY
FT                 SQQPDLIREDSTKIPSWAAELMSIAKAAYEPKATPVASEAVRYTTGMSVCN
FT                 YCRQQGHLEKDCKEKICRYCNIVGHTYVECFSLKNAINNGRLSKEKLEKLA
FT                 SAPAAAAQPVVYTPFPIPTPAPMPYVIPAPQANNATQNNSAPQENNGKQNG
FT                 AYRKNNVRRYSGERNGGDNRNYNNNNGYNNRDDNRNYNNNNRYNNDRDDNR
FT                 NYNRRDDGGYDNRRNDRGFENRRNNRDFDNRRNDRGFDNRRNDGRGNNNNN
FT                 RYNDQNNGNYNNDRNRQDNRNARNQSGDSLNYQDARYQSGVSGNQQKCQKS
FT                 VRRFFKLPGCSLPVGGIGQSISNNPPNPKPTPTQEKKVEGQISKKQEKIEN
FT                 SKRQIKEIAVQFNKLKEQSKQEKEANVQEKINNRKYLIRFATAGRKPPIVE
FT                 LTSEKLEGRKARFYADSGADVTLIKASNVTSRTIIDKQYVIAINGVTPGEC
FT                 LSLGRTNMSLEGLECNVHVVPDEFPIDTDGILGWDVLSKYGGKVNAADRCI
FT                 EFGQTIIPFISRRKIYYTCTYETSDLRKSKR*"
XX
SQ   Sequence 19389 BP; 6928 A; 4344 C; 4275 G; 3804 T; 38 other;
     ttttctggtg ctaagtgtgg ggttttgttc gcaaaatata cgggcgtatt ttaacaccgc        60
     gatagagata gattactcgg ttatcatttc aatccaatag acgggaagga aggatgaacc       120
     ttgcctgggt actcatcatt gcagccacct taaggtaagt caagtaaatt ttaataaaaa       180
     ctaacaatta taccctggga ttaacaccag tgagaacttc tccggttcgg ataactaaca       240
     actaacttaa accgctccga aatatcaaat tccgtggtct tagataccgt gataaaatac       300
     gaaatatggc agaatcgaat ccatctgatt ataaaatgtc gaactttaac gaacataatg       360
     gtctcgaaac acagaacata ttcacacgcg aggctaacga tcccgacact tttcaaagac       420
     gtttgcaaga attcgagatg tcagcggaac cggcgctact tctgcacact cgattaacga       480
     tcgcattgca actcgcggac gtggccatgg catatccgtc aaggggaatg atcgacaccg       540
     cgataagtca catacaggga atagtacagc aagaaaggtt gatcccaacc gataaaatac       600
     aattgttaaa ggttgcgaaa gaacacctac tgcaagtccg agacaaaata gaactttcgg       660
     aaacaaatga caaaacgtcg caacaatcta acctccatgt tacacataat aacggaacga       720
     tccccaagtg taaaatattt aacgaaaacg acccattcgc gctcgatatc aaagaagaaa       780
     aattagacga ctacgttaca gaccgaaagc agcaactatt cgcgaaaaca tgtgtatcgg       840
     gctaaactcc ggtgctctag acacagtaaa tgacatctat gacaaaaaac caatcttcgc       900
     ctcagctcga aacgacagag ttagcttgat cgacacgaga cacgactcca acgacgcacc       960
     ttataccgaa caccggggat taacctttac cgaacagcta cccgccgata gacgtcttaa      1020
     ccgatcgctg ttaggtgaat tacccgatcc taaaaatcat gggctaccct ctataggtaa      1080
     tttttttgat aagcttgacg cagagcaaca acctgggccg caaccgggag actccgattt      1140
     tatagagcaa tacgaacagt tcaaaaaacg catgcaggat aaagtacacg aggatttaaa      1200
     ttcaaaaccg tcttctgatc cgattattcg acacacacaa aacgtacaac agcatagaga      1260
     ccgctctcgg gacggaggct ggatgttctc gttacaccaa gcattgaaca caatccctca      1320
     ttacgacgga aatccagaca tgcttgcact attttgtcgc gcagttcgcg acgtaattca      1380
     cgaattcggc ccggaatccg aacgctgggt actcaactcg ttggcatcga agtttcgggg      1440
     acgtgctgct gacggctaca cttcgcgcct gacgcaatac gacaccgtag agcggttgct      1500
     agccgattta actacgcagt acagcggcgt tggcggagcg gataaagttt tagctgatct      1560
     taaagtaatt cgccagtatg caggagaaag tgccggagac tacggactac gcgttcaaac      1620
     attgcacaat cgattgttaa acatctatga cgcgagccgc gacatgcgca actgggagag      1680
     agctacctat aaaaataacg ccgataagga ggccctcgaa caatttttat tcggtctaaa      1740
     cggagaatta caacaccaag ttcgttctaa aaacccacta tgtctcagag aagctattac      1800
     ggaggccgta gcatttgaac accgtactag cgcgcgccgt gcatacagtc agcaaccgga      1860
     tctgattcgc gaagacagca ctaaaattcc gtcgtgggca gccgagctta tgagtatcgc      1920
     aaaggcagca tatgaaccga aggccacgcc agtagccagc gaagctgtca gatacactac      1980
     gggtatgagc gtttgcaact attgtcggca acagggacac ctagagaaag attgcaaaga      2040
     aaagatatgc cgatattgta atatcgtggg ccacacctac gttgaatgct tctcgttgaa      2100
     aaacgcgata aataacggac gtctcagtaa ggaaaaactt gaaaagctag cgtcagcacc      2160
     cgctgccgct gctcagccag tagtgtatac ccccttcccc atacccactc cggccccgat      2220
     gccatacgtc atacctgcac cgcaagcaaa taatgcgacg cagaataata gcgctcctca      2280
     agaaaataat ggaaagcaaa acggcgctta tcgaaagaac aacgtgcgca ggtattcagg      2340
     agaacgcaac ggcggggata atagaaatta taacaacaat aatgggtaca ataatcgaga      2400
     cgataataga aattataaca acaataatag gtacaacaat gatcgagatg ataatcgaaa      2460
     ttataatcgg cgcgatgacg ggggatacga caacaggcgt aatgaccgcg ggtttgaaaa      2520
     tcgtcgaaac aaccgggatt ttgataatcg gcgaaatgac agaggatttg acaataggcg      2580
     caacgacggt agaggcaaca ataataacaa tcgttacaat gatcagaata acggcaatta      2640
     taacaatgat cgtaatagac aagataacag aaatgccaga aatcagtccg gagattcttt      2700
     aaactaccag gatgctcgtt accagtcggg ggtatcgggc aatcaataag caacaatcca      2760
     ccgaatccga aaccgacgcc aacacaagaa aagaaagtag aggggcaaat cagtaaaaag      2820
     caggagaaaa tcgaaaattc aaagaggcaa ataaaggaga tagccgtgca gtttaataag      2880
     ttaaaagaac agtcaaaaca ggagaaagaa gccaatgtgc aggagaaaat taataatcgg      2940
     aagtacttaa taagatttgc tacagcagga cgtaaaccac cgatcgtaga gcttacgagc      3000
     gaaaagttag aggggaggaa agcacgtttc tatgcggata gtggagctga tgttacgttg      3060
     attaaagcga gtaatgtcac tagtaggacg ataattgata aacaatacgt aattgccatt      3120
     aacggagtta cgccgggcga atgtttaagt ttaggtagga caaatatgag tttagaggga      3180
     ctagagtgca acgtgcacgt ggttcctgac gaatttccca ttgataccga tggaatctta      3240
     ggatgggatg tgctttcaaa atacggtgga aaggtcaacg ctgcggacag atgtatagaa      3300
     tttggacaga ctattatacc atttatttca agacgaaaga tttattatac ctgcacgtac      3360
     gagacaagtg atttacgcaa gagcaagcga tagatcagag caagtaggat ttgccccttt      3420
     acaaaattta ggagaagggt tatattttgg aaattttatt ggtattaacc aagaaggcaa      3480
     aatacacgcc ttatgcgtta atactacaga acatgaggta gagttaaatc caccagaggt      3540
     aacactggaa gcctgcgaag ccataaaaga gggaggagaa gaatttaatc tagaagaaga      3600
     cgaacctgaa gagactgtca atatactatc gatattttcc aatgaaagca aggacagggc      3660
     cgaaagaatt tttgaacttc ttgatccaga gacacttaag gatttaacgg aggaagaaat      3720
     aactcatgtt aaagaaatca tccgagagaa gccgcatatc ttcgggctac ccggggagaa      3780
     acttaaagca acaacactag tgtcgcacaa gatacctact actacaaatg tcccagtacg      3840
     atcgaaagga tacagaccaa gtcaagaaga gaaagaggag ttagggcgcc agatagagca      3900
     gatgctgaag gacgacataa tcagaccaac agattcaccc tacagctctc ctacatacgt      3960
     gatacccaaa aagcccgcag cggacggtac gaaaagatgg cgattagtaa cagactttag      4020
     aaaactgaac gaagtaacgg tgggaaatag ctacccgata cccaatacag cggatattat      4080
     tgacagcgtc gcctcagcta ggtacataac cgccatagac ttgaggaccg ggttctacca      4140
     gataccaatg gaccccgcag acgcccacaa aacagccttt actgtaccgt tcggccatta      4200
     ctgctatcaa cgtttaggaa tggggctcaa aggcgctcct tcgacatttc agtccctgat      4260
     ggacttagca cttgcaggct tacaaggaac agaactgtac gtctatttag atgatataat      4320
     cgttttcgct agggatcttg aagagcacgg taagaagttc cgacgcttga tgaagagact      4380
     agacgacgcc aacttgacaa tcgaacctat gaagtgccaa ttcctgcagc gagaggcaca      4440
     ctttttagga catatcgctg gaggaggaaa aattcgagca gatcctaaga aaataaaagc      4500
     agtaaataaa tttccagtac caacaaacgc caagaaaatc aaacaattct taggactcgc      4560
     aggatattac aggcgcttta tcaaggactt cgcgaaatca gcagcaatcc tatctagact      4620
     gttgagaaag aacgagccct ttgtgtggaa agaagagcat cagcaagcct ttgacaaatt      4680
     acgaacggca ttgtgcgagg aaccagtgat gaaggcaccg gacctaacta tgcccttttt      4740
     agtaataacc gacgcatctg attacgccat aggagccatc ttgagccaag gacagttagg      4800
     cagcgaccag ccctgcgctt atgcatcgcg agtccttaaa ggacccgagc taagatattc      4860
     cacctacgac agggaactac tagctgtagt gttcgcaaaa gaccaattta gacactacct      4920
     cgcaggacgc aaatttacag tagtaacgga tcacgagccc ttgaaacatt tcttcaccac      4980
     gaaaaaaccc gatctaaggt tcaacagatt gaaggcagag ctcagaggct acgaattcga      5040
     cattgtatac agacccggag ctcgcaacgg aaacgcagat gcactctcta gaaatcctat      5100
     cctcgacgaa ggagaagaaa atccagagag gccaaaagca gaattgtacg agttggcaga      5160
     taagcaagag cacgacgcta cgatactacg atttaaaaca acaaggaaaa gaggcaaatc      5220
     caaaaagctt ccggaatcag ccgatactgc agacaaagaa agaatatcga cagaatctga      5280
     aaactctgga aacccaagag aaagaaaacg acgagtcgta gtttacaccg agagcacagg      5340
     tccagataac tcctcagatg acgaatggca acccaaggcg ggaacgagaa atggtaaaaa      5400
     gagagtttac aagaaggttc acggcgagaa aaccgggaaa atatacccca catgccacaa      5460
     attatccgac tcacgggaaa catccgagcc aattctcagt caggcggacc cgaacagggt      5520
     cttggggaaa ctctgcaagg aagaaaatat gagacttgga gtacaagccg caagtacacc      5580
     gcaaactcgg ggaacgaatt acaacgacga ccctaagagg cccatacgga agcagaccct      5640
     taatagaagt ctgccgaagt ttcacagaaa cgacatggaa atcagcgaag acagcaacag      5700
     tagcttaggt agtgacgccg aagatgaacc cttaagagcc ggtcaagtag aacgggaaca      5760
     agaggtagaa atatcacgca aactcatcga gaaagaacct tcactgaatc gccacgactt      5820
     atcacaacca ctaacgccga ggctgacacc aagcagtaac aacagtcatg aaacatcaag      5880
     gccaatccct cagaaaacga acagtgagcc gagtaacgta gaccccggta ataaaccgac      5940
     gagcgcagaa tcaccgatag caaacctccg acagacgttg tttggcaagg agaataaatt      6000
     tcgaactcgc ctcaccgtag acgtagagga gataagtaaa cgagataagt caggagttct      6060
     aattaaaata tgggaaagcg gagcgcaaag tagcaacgag atacccgacg aaaagagggt      6120
     caataaaaga aatccaagcg cagaaacacc atacgaaagt atagactctc cacagccgat      6180
     tcttaccaca catattccct tagctccaca cgacagtcat cctagcactc taaaacacac      6240
     tcttcccatc tacagaccaa ggaaagattt ttatcacatt acaccgcaaa tagacgatca      6300
     agctaacgca aaacccttgc ctgagagcag tgcttcagaa gcatccaggg gagacatcga      6360
     cctacgcctt cataatatga gcaaacacga taatactagt cccataaagg gaggaagccg      6420
     ccacaagtcc gtagagccaa tggagggctc gtttaacgat caaccagcaa ccgatcggac      6480
     ggcagcaact atgggcacgt cacccagggc tcagcctacc ccgacaccat acacaggaac      6540
     agatttggat gcaatagccc aacggtattg cgtgtactca cagcatgaag attgcgcgga      6600
     accatccaaa cggttaacgc acgataaaaa catacccatg gagccaccag raaactgcct      6660
     gttcaactcg ataataaaaa tcttaaatct acaaatgaca ctgagtcaac tgagatataa      6720
     actcttgtgc agcccgcatg tggaaaccta tggtgatcca gaagaggcac gccgcatctt      6780
     gctatcagaa gtcgagtacg gagacgcgga ttgcatatat gtattctcga gggagtttgg      6840
     atacaacgta tgtgtacatt tccaaacgaa taaccgaaat aattactgtc acttcaatct      6900
     aaacgagggt aaggaattta tacatttaca cctagcgggc aatcacttca cgccgtatat      6960
     tataacagag gacgaatccg acgaagaatc agaatctgaa tcagagcagg aagaacaacc      7020
     ggcaaacttc caaagaaacc ctcacgtgag agaagccatg gcacgctatt taatagctga      7080
     ggcgcgacca gaacaagatt caccagagtg ggaaagagat cctaatgaca aagagctatt      7140
     cactggggta caaagcctga atgatcaccc gttygcgcat aaatgcaacc ttgcttatat      7200
     cttggcagaa gacatgatcc tcgacacaga agtactaaac gctttgatag aaaggcgcta      7260
     catacacgca gaggagctct tagaaacaca acgtttcgta ggcgaaatca ttgtaacaaa      7320
     atacagagag gcgtacatgt tcggaatcgt tttaaagaaa cacctacacg acaaaccctt      7380
     aagaccggat attgctgggt gtataaaaac actacagtta ctgactgaaa agtacggaat      7440
     aacaacgttt ggctttatca gagatttggg aataattacg ctcgcagact gggaacacgt      7500
     aattgagcag tgtaacaaga cctttaaagg aaaagcaata tcaatcgttt tatttaaaaa      7560
     taacttacca gtaccaaagg tcgaggacag atacagactt atcaaagaat atcacgagtc      7620
     atcaatcggt ggtcataagg gaacgaacaa aacatacaac agaatagcca gcgaatacta      7680
     ttggcgaaac atgcaagcag acgttagaca gttcgttcga ggatgcgcag ggtgccaaga      7740
     aaagaaacta gtgcgggtaa aaacaaaact gccaatgctc atcacggata ccccatctca      7800
     cccatttgac aaaatatcaa ttgatttctg cggaccaatg ccccaaaccg aacgaggaaa      7860
     ccgatacata ttaaccatcc aagataactt cacaaaattt tgcatattag tgccagtcga      7920
     acacgcaaca gcacgggaag taacgcgagc tcttacagaa aaactgattt gctatttcgg      7980
     ctcacccgta accctcatct ccgatcaggg agcacacttc atgaaccgag ttatggaaga      8040
     attcgcacgt atattcagag tgaatctaaa atactacaac gaccgcgtac tatcgtgatc      8100
     agcgtaaaaa cccagtccag cggaataggc ccaacgaatg catcatacac tyaaagagta      8160
     cattaaaatg tatatcaaag acaacgataa ttgggatgaa gtagtgccat tagcaymgca      8220
     cgsatacaat tctagggaaa ccgacgccra ckaggwtact saccgacaaa aaawagtctt      8280
     trgccgacgy gcacgcacac cgtcaagctt cccaccacga garcacttac aaacgtacka      8340
     cgackatctt gctgacacaa cagaagctta cgctcaactt agaacgatgg cagcgatgaa      8400
     tctagtacaa tcaaaacacc gctcgaaata ctattacgac aggaaactaa atgtgcaaca      8460
     ctttagagaa ggagaaatgg tctatgttct taaagaaccc aaagtcggcc agtttaaatc      8520
     cgaatataag ggcccgtgcg aaattatagc tattaactac tcaacacaca acgcgaaaat      8580
     acaaaaaggg gataaaacac ggatagtaaa tataaataag cttaagcgat atataccgga      8640
     aatcgaacag gaagagggta cagatataag tatgaacaaa aaataataat aaaattgaac      8700
     aaaaaaaaag cataatacta aggttaaagg ttataattca ataaaataat aaaataatta      8760
     tatagggata gtaggataag ggaatacaat actaatataa gagaaaacat attagccatg      8820
     gtactaggat aaggatatat acacacgcga tttgaaatta aacattgcag agtaaacagt      8880
     aattaaaagt agaaacgttt aaattaaaca atattgacat ttaaggaaat aattatattg      8940
     aattaataaa tgataaacaa ataagaaaag ctcataaaca aactaacttg aacatctagc      9000
     gacccccgga cgccgcataa aataaaggaa catttaatcg aacatctagc gacccccgga      9060
     cgccgcaagg ttcgagcagt ctaggaaacc aagtacagaa aaatatacta atatgaatca      9120
     ataaataaac aaaatttaac gaaagaacca ggaggggata ttgattggat cagaactagg      9180
     tttttaaata aataatcact ggaattccca gtaaaatcat atatgtatta atcgcatata      9240
     aatcagacaa agtttaagcg cagtaaataa agtacgacga tcaatatccc gacgggttgc      9300
     aggcgataag ggccgcggac gataagcaca ggagtcacta tgcctagacc aggcatcggc      9360
     cgctggcacc tcagggcaac ctaagtgatg atgacggcaa gggaagtgca tcctggatcc      9420
     gactccttga agcagacggt tcctccagac cggagcaggc ccccgacata cagggcaaac      9480
     actacaacgg gataggcagc tctcacacac ggcgtgaccg ttatcacact gccgaaagtc      9540
     tggataaata aaattatcac agataggaca agtgaataaa tcacgaagca gcgcctctgc      9600
     ttcgtcaggg ttctccgccg gaagagccgg ggaagttgac tgagctgcag ctagctcgcc      9660
     cgactcagca actgcaacga ctccaggaac atcgtcagaa acaccatcct catccgaatc      9720
     caggaacaga tttcccaata gatcgtccgg cacagaagaa gttgggctag acggcacctg      9780
     agccraaggc tgatcgacgt cccagggcga agcaggcgga gttataccga cccaagtatc      9840
     aacggggtct gggttaggcc gcgcagggac tagcgcccta ccaggctcat aaggaattcg      9900
     gagacttggt cgaacctgca acaaggagag ggattatata gaaacaagta agcggagcgc      9960
     agagtagaag ctaattcacg taaccgtaac agaagatgca taaaagatac gctagaagag     10020
     actgtcggaa tcgctatcag ttacaatccg acgaggattg gcagaacgta ccgccgactc     10080
     agaagaaaca gctaatacag gcgaaggcga cccgcggacg agagtattca cgggagaaaa     10140
     ggagcaatgc ctagcgtgac tagtccaatc atcgggcttt agaaattgtc gacagcccag     10200
     atattgatac cgacaagcct gcgtttgctc accggctaga gattccaaca ctaagtttcg     10260
     cacaccgcca cgcggaccgc ggcaaatagc acacaccgta gtattatccc aacaaaaact     10320
     acataccgag tgaccattta aacattgata aataggcgta aacatgtaat cgcaacaaat     10380
     cgggcagggt actaatacgg gcccagaatt attcgaaatc gataaccggg aagacggacg     10440
     cgcgactacc tcggcactat gcgatgagct gaacgaatca ttygatagca tagaaaagga     10500
     aggatttgac gaatcattag agagatcaac ctcaaccacg gatcgctcgg gcggcgcgcc     10560
     gagcgccggc attgataaat gaggtaaagc gtcctgagat aaagattcgc gtggaggtac     10620
     cgcgcgggag acctcaaatg acggcacgga gccgaaaggc gggagcaagc ctccggcaga     10680
     cggaaacacc gactcgtaat tttccgaatt cgtacgcgta acgtcaaaag aactgtcgtg     10740
     aattacggga tgagagccag ataaattcgc ggaaaaatac tcggtataag caagagcacc     10800
     gtcgtggaaa tcgctcctaa cagtcgacgc gggaattgcc tcgggagcag aaaccgtagc     10860
     actattgtac cagtaaccgg cccaccctga tatgttctct cgcgttaaat ccgacccacc     10920
     attgcaaaca gacgtagcga ccgaatcgcg agtagtagcg cgcggataca cggagggtgt     10980
     atgagacacc tcggaaccgg agcgctcctc gctaatccca gccggaaagg aaggcggata     11040
     ggtactcgtt attgggggca atggtgcagg aggattggac actgcagagg gattatacgg     11100
     gaattgggat acgccctgcg cgacccgacc ggacagattt aaaattggtg acgttgtctc     11160
     gacaaaacca cgaataggcg tccgactacg cctaggatat cttgcactta aaaaaaaaar     11220
     aaaasaacac astgaaaaat aacgcaayaa ccggtcaatt aatgatatat caagttaaaa     11280
     caaaattatt acttacacga gaactaggcg aagccacaga aatgggtcca ggcagaggtc     11340
     gtccacgccg gaagacacga gaaccaaaag aagaaggtgc gaattccgag gacggacgga     11400
     agcctcggcc agctgctcgg actgaagtag acgaggaatc acgttctcca ggcacccttc     11460
     cgacagcacc tcggccacga ccagtwcgwc ggtgggatgg tcgcgcaccc gattgaggta     11520
     acgtgtagaa gacttgrtgg atccacgatc gggtcacaac gtccgrgacg attataggcc     11580
     gggtagactg ccggacggac cggaggaaca gcatgtcgtc aatcagccgg tctagtgaga     11640
     tgctggaagc atcaacccga gccaaaatgc ggtccatagc ggccatcayg caaktcggag     11700
     gacgaggagg cgcaaaggga ccctgcttcg aggccgccag gataaggcct aaaagcacga     11760
     caggtccaga tccacacgaa ccagaagaag ccatctttct ttctcttctc tgaaaacgcc     11820
     agagaaataa gtaagggaag aacgcagcct ccacagaaaa taagacgacg aagcgcaatt     11880
     aataaacaaa cacttaccaa taaattcacg agaagatgaa ccaacagcac gaggcaccag     11940
     aaagcactcg aaggaaaata cgtaacggtc aacaaaacag acggacagca attcggctag     12000
     cagtgaggta gagaggagcg atcgcgatca atttatacac acgagcagag attcccctga     12060
     tttcaaattc gcacaaactc tgtcagtggg gatagacgaa aaagtgtcga gacagcgtca     12120
     gcacttagtc cggaaggcaa ggtgcgacgg cagacggtga agcgcgcggc gaatatcggg     12180
     aacgaaaaac gcgaacgtat acaaaaatat tacgaacgat attacgatac aattatttaa     12240
     ccgcgagacg attacgattt ttttaactat gtaacgccta aattttataa tcgcgaagac     12300
     ggagatgtga aacgattacg gcaccggtaa taataacaat taggaaaagg tcattcgcta     12360
     tgtaaaacac agggataata ttacgaggta taattaaagt acctaggaaa ataatactaa     12420
     tttaaataat gagtaaatta gaagcgcggt agatgcgaag gatagtaygg aataaaataa     12480
     tttaaaaacg agcagcaaat gcaacgaaac aaattcgcag taaggcgaac ggggaaatgt     12540
     aaataggaac cccatcgccc caccgcggcc aacaccaggc aaatttaaka aggagacgcc     12600
     agccgaatca gcaaacgctc gctgaagaat actrcaattg agcattckgc ggccaaacgc     12660
     tcagagagag aaaagaaaag cacatacaaa aataagcaac gaccagataa ctgaaaatta     12720
     cgaacttatt tttgcccagg gtacgggagc tgaaaaccgc cacatacagt atgcactagg     12780
     cctccggtac gcgagataaa aatgtaggca acaaggcact aggtcaaaag ttcggcgata     12840
     ctaaataaaa aaaaggatac acttgttaaa acaataatag tgacaggcaa taataaaatg     12900
     gaactgtaca aaccatgtca gagctgcgcc gaagacgcac atgacaacaa gaacgaaccc     12960
     agggggaaag ctaggaaaaa acatatgtac acataaaagc gtagtcccct cgaggagtat     13020
     ggtacaataa gtcgggacaa attggaggct gaaagaattc agagaagcat aaatatacat     13080
     ataatcccgg cagacacaca tctcacacgc aaaacgtaga atctatcgtt tgcaatcgac     13140
     ccaagaagag aaaaggatct agtacgatat ccgtacaagg atagccttct acaagcctta     13200
     cgcactagaa atgggcaaac aatcaagcgt gaacatatac aaggcaagga caaaaaaaca     13260
     tcagaagcaa aaaaagaaac tatgcgcccg aaagaagcaa attaggagtg cagaaaaccc     13320
     taaggcacac gcgcgcgcgg gcacaatata gatagacact aagacattta aaagcacatg     13380
     tataaacaaa aaaaaaaaac ttaccacatg gacgcaatga gtagaatccc tcgcgatttc     13440
     cgtatgcatm acctccaaca ctttagtgta cggcactcta tcgaactcgt gcacgaacga     13500
     ttgacggata ccacgaggca gattgcactg agacatgatg cctaaaacta atatacggac     13560
     gagccagtaa aagaaagcac taaacatata aagatagaaa aaagaagcaa ggaaattact     13620
     cacataaaaa aaagaaaacg caagaaacca caacgaaatc gagtaaaaga gcaagcacga     13680
     gaagagcacg tgttgacgcc ggaccaggaa aggctaggtg cagctgcatc ccgccaaatg     13740
     caagtgcagt gaagttcaca accgaagtat acaagaacgc gggaacggaa ccacaagcgc     13800
     ggaactagag gcacacgcag agcgctaccg ctcggccgga gtaggtacga cggccgtgca     13860
     gcccaggaat gcacaactgc cgaaggcggc aatattcaaa tcaggatttt gggaatcgac     13920
     gatataaatc gaaccaataa tccgatttca ccctccttcg agtcaaaggt gcggacacac     13980
     cccccgagag gactcacacc ccaagaatcg caaacaaata attargggck gataaacaaa     14040
     taaaaatttt tttatgcctg acaaaaagtt cggaaaaatt tctctataaa gggtggattt     14100
     gtatagtcag gggatgtacc aagaccaccc ctatcataaa aatttttaat tctaaggaaa     14160
     ccacgagtcc taggaaaaag tccttcgggg tacgtatgga gcatccccag gacatctaat     14220
     ggacaaatag ggtgacccat tatttaaaca atcttacatg ttaaatgcaa tatctcggaa     14280
     agttaccttc agaagggaaa aatctttacg gccctatatt gggcacacat aacgattaaa     14340
     taatcaggaa aaagtccccc aaatgtttaa acaatcttag atgcttaatg aattgctcgg     14400
     agagttacac tcacataaga aagatattat acatacatgt taggcatcta taacagttaa     14460
     tgaaaagcaa aaattaaaca ccaattattt aaacaatctt agatgtttaa tgaattgctc     14520
     ggagagttac aytcacagaa gaaagatctt acacatacat attaggcatc tctaacagtt     14580
     aacgaaaagc gaaaatagtc gcccaaatat ttaaacaatc ttagatgact aatgcattac     14640
     tcgaaaagtt acaataaggt caagaaaatt ttgtagacac gtatcgggca tccctaaagc     14700
     ataagcccaa cacacacaca cacacacaca catacacacc cgacataaaa caagtctaac     14760
     attcggacaa aacgaaagaa aaaacgcggt aagcaaaaaa cccatctaga gacagcgtca     14820
     gatatcaagc gcctacactg gcatagaagc ggtcagaccg acgtcaacgg caaagcagag     14880
     aacaccgtca gaccagcaga aaggaattaa accagtacac acgcagaatg gtaaagaaaa     14940
     cgaaaagcat tcgcttagaa aaggtttatt aatagagtca tcccttaaag gatctctggc     15000
     agaaagaatt agccgagacg agggagttgc tgaagaaatg gttcacggct gaacactacg     15060
     agtacacttg cccttgcgga accgtagtaa caatggtaaa ctcgaccttc cgacggcaaa     15120
     tagtcgtcgc aggagcagtc ctatacgact cgacgggaga cacatcctac gtaatgtcta     15180
     aggaccccga aataaataag gaaagatttg ggaaaaagat ggacgagaag agtaaaagag     15240
     aaagaggaga aatataagat cagaggtgta aataaagaaa gatcaataaa ccctaaccct     15300
     aaccttaaca aaaaaagaaa aaacacaaaa tcacaggctg aggactaatg ccttaaaagg     15360
     acaacggtcc cagtcaagac cgcaattacc aacagaagga aagactaact aggcatcgtt     15420
     agccgataca gcgccctcct cgttagccga tacagcgccc tcccttaccg acggagcacg     15480
     aaagcgaaac cagcataaga ataagatagt atgaagcacg acaagaagcc gacatggcaa     15540
     cgcgaacaag gtgcccgcct cggaagtcgg ggacctgagt tcaagcccag gacaaaattt     15600
     tttaattttt tatatttctg tttaggccaa cttacaccac ggtcgtaaca gcttccactc     15660
     ggtcgctgag gcgcaattct ttttatattt ttttgttttt gttctttttt ttatattttg     15720
     gggttgttgg gtttttggga agtcgcttta ttawtttcta tttagagaaa agggataaat     15780
     aagaaaaaaa gggaataata ataataaata aattaattat aagaaacatc tggcactggt     15840
     atccaccaat ggccagggag ccgcatcatc ccaggggcct cgtcgatgga ccggccacat     15900
     acagagcacg gggccgtatc cgcggggatg ccccactcct cctcgtggca cgggaaccac     15960
     gttccctcag caacgaaagg gatcatcgaa ttatacaact cataagacac gatgacccca     16020
     taggaccgtt gctggaccct gaggtaagac ggcgctcccg gaggttgccg gcagaagacg     16080
     caacgccctc cgatgaagag ggtagagcct tccactccgt ggcatggata gactccaccg     16140
     tcaggcccta ggagctcttc gaacccttca tcatcggaca gggcctagga gaaaagcatt     16200
     attaacactt atctagaaaa acctcaatag caaactctta cctcctccgg gtcgtccacg     16260
     ggctcttcgc caagccccca gaactttgag aatcctaact ccccagccat tgtacaggaa     16320
     tagtaaaaag ggaaaagaag aattaaaagg agaaaacggg aggatagtgt atggaggata     16380
     gtcgcaatcg gactgcgaat aaacacacaa ccgacaaacc aagaagagct tgacgaaatg     16440
     caatcatggc agaaaacccc accaagagaa gagctaccgg atgaagaaac acgaagatcg     16500
     cgtctcgcga aatctgagcg cccgaaagac agcgcgcaag aaaagccacg aagaatcgga     16560
     taagcaacga aagccttatc acggctaaaa ctttgaatca aataaatatt ttgctagcat     16620
     taaaaccctt ggctaattaa agggatccca taagggagcg tcccataatg ctcctcatct     16680
     agcaccatat agcctaataa ttcaaataaa taaacaaaat ttaacgggaa tatagggatt     16740
     aatattacta acccacaagt ggatcataca attaaaatga cagccatagg cgtgaaaaat     16800
     gagaataaca ataacaatct aacacaaaat atagtagcca tcacggcgct atcacaccgt     16860
     gaaaacgcaa ctacaagaca ccgctcttac aggtgcgcgg catccaagga aaccaatgga     16920
     ggaatcacca tacaggccat caaccataac ccaggactat tggttgagaa actaaaccca     16980
     ttggcaacct ccagcacatc atggaaaatg atacaacgca taaaccttga gacattcttc     17040
     tctagatgga acaagttatt aggaagctta ggtatattaa aaacattctg caygcaaata     17100
     aacacagcat gcccgtacga gcaacagctg gctaagatac gtcagcaaat cgaggagaca     17160
     gcgaggaacg ctgacaaagt aaaagagcta ctacaaggtc acgaaacgac acagaaacca     17220
     agaatcaaaa gagcctggtt ctcagcgata ggaaaaatta gccgcacgat attcggaacc     17280
     ctagatgagg aagccggaga agaaatccag caactaatca gcataacggc caacgatacg     17340
     agacaactag cgaaattact agcaaaccag accgaactca tacatacaga attcggcatt     17400
     ttgcatgaaa aagccgacga actagacaat gccatggacg agctgatagc caatcaagca     17460
     aacctacaga aacaagagga aatcgcggaa gccttaaact tactggaaga caacgtaata     17520
     caatacgaac tagatacgga gatcctaaca gacgctgtac tctttgcgac ccaaggagtc     17580
     gtacacccac gcttcgtcac accagaacaa atagaaaaat cagaagccct cgctaaagaa     17640
     tcagtagctg actcacggtt tccatccacg gaagcagaca tgcccattac ggaattaatt     17700
     aaaatatccg acgtctcaat actgttccaa gacatgcatt tagtatacta tatagggatg     17760
     ccactgctgg actacggcga ttacgaccta tacaaggcgt ctgcattgcc gatcaaacaa     17820
     aaatcactga acgcatcaga cacattcgct tacatttggc cagaaacaga atattttgct     17880
     ctagaccagg gatcaaacgc atatatccct atctccttag atgcactgaa taaatgcaaa     17940
     aaacttagta aattatacat atgtagaaac acggagccag ttcacgaaat caatgacggc     18000
     gcgagctgcg aaattcagat cagtaccggc aaaactccca taaacttatc ggaatgtaaa     18060
     ataaaagtca tgaaatcaag ggacacattc tggatacgta caagcactcc gaacacttgg     18120
     gtattctcta caaataaaaa agagagacta ttttctagct gcaaacgact gacagacaac     18180
     acgatagaca ttgacggcgt aggcacgctg cgcctgccgc atggctgcac cgcacacacg     18240
     aacacagtac gactcgtagc gtcgcgcgaa gtacgcgtta actatttgac ggtactattt     18300
     aacgaaacgg aattagacat agcctcgttg ataaacagta cgggcaacac gtcgttagcc     18360
     tttattaaag acacgctaga gaaagaaggg acggcaaaat ccttaaacct tagaagggat     18420
     atgttctcgc gttcgttaaa aacgggacgg gattttcgcg atattattga taaggcaaaa     18480
     aggctaggcg aatataaaga catttacggt agattctcgt cccttcagtc aacggtgact     18540
     tactccggga ctggcatact cacgttcgtc ataatagtag taattatatg gaaagttctc     18600
     acaaaaaggg gggccccgct actaaaccgc gatagattga tttcaggaca caacacccat     18660
     gcgcagctcg gcacagagcg cccacagatg tatgaggcca gacaaccaga gatggcaaac     18720
     cagggtcttc catactacct gccgatgcaa tcagcaggcc tcagcctccc aaacctacag     18780
     cagctggccg cagccaatgg gatgcttctt cagccagccc tgatgccaag agattcaagg     18840
     ttgaatctac aaatgattgg tgccaagaac aacgaagata accaatcaag acgcaacata     18900
     agattaagcg agagtatatt ttaagaaact taaatgaaag agagattcgc taggtagtta     18960
     taatgtataa taggattacg caaacacagc caacggctca ctacactaca cacaataatg     19020
     taacaattac acgccagaaa aaaaaaaaaa ttgttaaccg ctcgaccaac ctaagcaaaa     19080
     aaaaaaaatt gttaaccgct cgaccaacct tagcaaattt atgtgaccgg agaaaaacgc     19140
     gtattacttt agaaattttt ttaacaaggg aattagggaa atagcatgta aatcttagcc     19200
     taacctagca tattttgtat gaaactagac tcacttacct ttatcttgat tcgggactag     19260
     attatactgt aaggacttag agtaaaaggg aaattcatat gagaaaaatc tcaaattttt     19320
     tttacgtgga attttatttg catagtttta gtttgcgggc gagggcgccc ggtagcgacc     19380
     ccaaggacg                                                             19389
//
ID   Gypsy-37_NVi-LTR repbase;    DNA;    INV; 486 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   01-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-486
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1385-1385 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 486 BP; 134 A; 140 C; 96 G; 116 T; 0 other;
     tgtcacgtgt gaatactcac acgtatatag cgttgctagt tataatgcaa tcgatgcata        60
     agtcgccaaa tacgcgcata gcaacagctc ggactcaccc cgaagcccgt ttctttcgac       120
     tcagcataac ctcccttcca cgatttcgga cgaccgcgcg ggtaggaatc acaccacccg       180
     gggagtctat aaaagggggt gcatgcgggc gctcgctctc gattccgcca ctcacgatcc       240
     agcactagac aggtagtttt gactcggaga cgacagatag gatcgtatac ttagaacgca       300
     cattctccga gatcacttta acacgcgttt ctctctttca tacaatcagt ccattgtgaa       360
     ttacgattaa taaacagaca cattcaccga taatctctcg tgttcattca ttaccccggt       420
     attttcgcag caaccgtgag cttaacacct cacggagaac aaaaccatcg accctcacac       480
     gtaaca                                                                  486
//
ID   Gypsy-37_SiCu-I repbase;    DNA;    INV; 4444 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4444
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5059-5059 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..4442
FT                 /product="Gypsy-37_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGEEQGASPTNQDILQALASLTQALTAQVTSQTKGP
FT                 TTVPPALQCLQIPHLSAPHELSLPLFLDWSQRWQDYSNASQLARHPPSTQQ
FT                 GILRSGLHPDWTMLWTSGRLPIDSTTTAADAVKALGAYLRQKRNPLLDRQA
FT                 FHKRDQLPGESVDQYYASLKLLDEACAHQVDMTCPSCDATTSCPLCPGCST
FT                 AIDMAQRQQDTRIRDRLICGLRNRDIQRRIVTEQFSSDLTLDRVMRICVAM
FT                 EASNSFEDEVTGAGQPLAAANATSGYKRQQQQTGERNDQKRSRPDPSKPCE
FT                 WCGFTPNHKRSACPASHQRCRNCGGEGHFSKVCRRPKQANSTDVDRDLEPI
FT                 DTTASSNSNTCPPPASSIVPYRTNTVIVGIAQRLLPVHTIINGVQCLIPWL
FT                 ADSGAGADLLPERDFKLLPLASRASLSPEIIHCVGANGIGLDPVGTVKATL
FT                 QLNGRRWETTVGVCRHLNAPLLSKQGCIALGLIPKGWPHCMLASNQASAII
FT                 PGQAVTHSPPATIINVNTEEIKAAIMGKYVDAFDDAVLRPMHGPPMKIELV
FT                 EGATPCKRYRAYNVPYHWKDLVKRQLEEMESKGVIEKVPIGEPVDWCHPMV
FT                 VVPKKGSSEPRVTVDLTGLNKFVRRPAYPVRVPREEVAKIPPGMKYFTTLD
FT                 ARHGYWQVPLDPSSRRLTTFITPWGCYRYCRNVMGLISAGDEHNRRGDEAI
FT                 QGIPNVGKVVEDIIIYDEDLENHARRVEEVVARCQENGITLNARKFHFAES
FT                 ETDWCGFHISAAGYTPAPHLYAALTNFPVPTNKTDIRSFNGLVQQFEAFSH
FT                 RLTELCAPIRSLLSPKAAFVWEEPHQRAFREVIAELCSSRVLAQFQPHQPL
FT                 RLETDAAQSRGLGYALYQQQHDGTWRPLQVGSRYVTPAESRYSATEIEMLA
FT                 VVWAVRKCKLYLLGSSFELIVDHRPLIPIINNKTLDELDNHRLIRFKEKLS
FT                 AHLITAIWRAGVKHTVVDVFSRYPAADPDEEDLQMDPDDDPEVLIAAATHD
FT                 PQDGTRILSDPILQSLRTIAQQDSEYRRLNDAILKKLKTKEDLDEDLRPFW
FT                 KVLHRLSLHDGLIILGSRLLIPTPLRRAILKTLHASHQGQERTLRRARQSV
FT                 FWPGITNDIINVVKSCGECASFLPSQQKEPMVVEPPPSYPFQHVGVDLFSH
FT                 AGREYLVMVDRYSGWPTVAKCNSTDSGSIIRQLRQWMADLGIPEKLVSDNG
FT                 PQFSSQEFRQWAQRWNIIHVTSSPHYPQSNGLAEAGVKAMKYLLAKTTTNG
FT                 DISSEAFQEGLMEWRNTPRADGRSPAQLLFGFPTRTKLPVHRSKFAEEWRN
FT                 RAISSDQKAATLREKAKKRYDTGAALLPGLQPGNVVRVQHPQTKRWSTLAE
FT                 ILERLPRSRSYLLRTESGGTIRRNRRFLRPFNPCSSEAQRQATPPPKEHEQ
FT                 AAPLRRSTRQRRPPARFADTVGLVPSSNLKGG"
XX
SQ   Sequence 4444 BP; 1134 A; 1344 C; 1156 G; 810 T; 0 other;
     tggcgcagtc gacagtgctt tttttagcgg aatttggtcg ctaaaaaaaa gcgaaaagaa        60
     ctaaaagtca agtgtaaagt gaatgtgtgt gtgagccggt catcatgtct ggagaggaac       120
     agggcgcttc gcccaccaat caagatattc ttcaggccct agccagcttg acacaagccc       180
     tcacagcgca ggtgacatca caaacgaagg gaccaacaac agtaccacca gctctacagt       240
     gtcttcagat ccctcatttg tcagctccac acgaattatc cctcccattg tttctggact       300
     ggagtcagcg atggcaagac tactccaacg ccagccaact cgccaggcat ccgccttcca       360
     cacagcaggg tatcctaaga tccggactcc acccagactg gaccatgctc tggacatcag       420
     gccgcctccc catcgacagc accacaacag cagcggacgc cgtgaaggcg ctcggagcat       480
     acctccgcca gaagaggaac ccgctgttgg accgccaggc gttccacaag agagaccagc       540
     tgccaggcga atctgtagac cagtattacg ccagcctcaa gttactggat gaggcgtgtg       600
     cacatcaagt tgacatgacc tgcccatctt gtgacgccac cacaagctgc cccctatgtc       660
     caggatgcag taccgccatc gacatggccc agcgccaaca agacaccaga atccgggatc       720
     gtctgatttg cggattacgg aaccgagata tccagcgacg gatagtgacg gagcagttct       780
     ccagtgacct taccctggac cgggtaatga ggatctgcgt cgcgatggag gcatcaaaca       840
     gttttgaaga cgaggtcaca ggggcagggc agcccctcgc agcagcgaat gccacctcgg       900
     ggtacaagcg ccaacagcaa caaacaggag agagaaatga ccaaaaacgc tcacgacctg       960
     acccaagcaa gccttgtgaa tggtgcggtt tcactccaaa ccacaaacga tcagcctgcc      1020
     cagccagcca tcagcgctgc cgtaactgcg gaggagaggg gcacttcagc aaagtgtgtc      1080
     gccgcccgaa gcaagccaac agcaccgatg tcgaccgaga tttggaaccg atagacacaa      1140
     cagcatcctc caacagcaac acttgtccac caccagcttc cagcatcgtg ccataccgaa      1200
     ccaacactgt tatcgtaggg atagcccaac ggttactacc agtgcatacc atcatcaacg      1260
     gcgttcagtg cctcattcct tggctggcag actcaggagc aggggcggac ctcctccctg      1320
     agagagactt caaactgcta ccacttgcgt caagggcatc cctatcacct gaaatcatac      1380
     actgtgtggg agctaacgga attggtctgg acccggtcgg cacagttaag gcgactttgc      1440
     agctgaacgg acgccgatgg gaaactactg ttggagtctg ccgccacctc aacgcaccac      1500
     tcctcagcaa acaggggtgc atagctctag gcctcattcc caaaggctgg ccgcactgca      1560
     tgctagcaag taatcaagct agcgccatca taccaggaca agcggtcacg cactcgccac      1620
     cagccaccat catcaatgtt aacacagagg agatcaaggc tgccatcatg ggaaagtacg      1680
     tggacgcttt tgacgacgcc gttttgcgac ccatgcacgg ccctccaatg aaaatcgaat      1740
     tggtcgaggg cgccacgcca tgcaagcgct atcgcgcgta taatgttccc taccactgga      1800
     aagacctggt gaagagacag ctggaggaga tggaatcgaa aggggtcatc gagaaggtac      1860
     caatcggaga gccagtggac tggtgccatc caatggttgt agtgcccaag aaggggtcgt      1920
     ccgagcctcg ggtcacagtt gacttgaccg gactcaacaa gtttgtgcgt cgccccgcct      1980
     atccagtccg cgtcccccga gaggaggtag ccaaaatacc accggggatg aagtacttca      2040
     cgaccctcga cgctcgccat gggtattggc aggtaccctt ggaccccagc agccggagac      2100
     ttaccacatt cataacgcca tggggctgct atcgttattg ccgtaacgtt atgggcttga      2160
     tatccgcagg cgacgaacat aaccgccggg gcgacgaggc aatccaggga atcccgaacg      2220
     tggggaaggt cgtagaggat atcatcatct acgatgagga cttggaaaac cacgcgaggc      2280
     gtgtggaaga ggtggtcgcc cgatgccagg aaaacggcat aactcttaac gccaggaagt      2340
     tccattttgc agaatccgag acagactggt gtgggtttca catcagcgca gctggctaca      2400
     cccccgcgcc gcatctctac gctgctctca ccaacttccc cgtgccaacc aacaagacag      2460
     acataaggtc ttttaacggt ctcgttcagc agttcgaggc tttttctcat cgcctcacag      2520
     agttgtgcgc cccaatccgc tccctactct ctccaaaagc agcattcgtg tgggaggagc      2580
     cacatcaacg cgccttccgc gaggtcattg cagaactctg cagctcacga gtcctcgctc      2640
     agttccagcc gcatcagccg ctacggcttg agaccgacgc agcgcagtca agaggtttgg      2700
     gttacgctct gtaccagcag cagcacgacg gcacctggag gcccctccag gttggatccc      2760
     gctacgtaac acccgcggaa tcgcggtaca gcgcaacgga gattgaaatg ttggcggtcg      2820
     tatgggcggt gaggaaatgc aagctgtact tgctaggatc ctccttcgag ctcatcgtgg      2880
     atcatcgtcc gctgattccc atcatcaaca acaagacgct cgacgagctg gataaccacc      2940
     gcctaatccg cttcaaggaa aagctttcgg cccacctcat caccgcgatc tggagagcgg      3000
     gcgttaaaca cacggtggtt gacgtgttct cacgttaccc cgccgccgat cctgacgaag      3060
     aagacctgca aatggatcca gacgatgacc cagaggtgct tatagccgct gcaacccatg      3120
     atccacaaga tggaacaagg atcctctctg accccatcct ccaatcgcta cgcactatag      3180
     cacagcagga tagcgagtac cgccgcctta atgacgccat cctcaagaaa ctgaagacca      3240
     aagaggatct ggacgaagac ctccgcccat tctggaaggt gctacatcgg ctcagcttac      3300
     atgacggact catcattctt ggtagccgac tcctcatacc gaccccacta cgccgagcta      3360
     tcctcaagac gctacacgcg tcgcatcaag ggcaagagcg gacactgcga cgtgcccgcc      3420
     aatcagtctt ctggccaggc atcacaaacg acatcatcaa tgtcgtcaaa tcttgtggag      3480
     agtgcgcgag tttcctgcca tcgcagcaga aggagcccat ggtagtggaa ccaccgccca      3540
     gttacccatt tcaacacgtt ggcgtcgacc tgttctctca cgccggacgc gagtaccttg      3600
     tcatggtaga ccggtactct ggatggccaa cagtcgccaa gtgcaactca acagactccg      3660
     gctccatcat ccgtcagctc cgccagtgga tggcagacct gggcatcccg gagaagcttg      3720
     tcagcgacaa tggtccacaa ttctcctctc aagaattccg gcaatgggcg cagcggtgga      3780
     acattatcca cgtcacgtca tcaccccatt acccgcaatc aaacgggtta gccgaagcag      3840
     gggtgaaggc aatgaaatat ttgctggcga agaccaccac gaacggcgac atctcatccg      3900
     aggccttcca ggagggatta atggagtggc gcaacacacc tcgcgcagat ggcaggagcc      3960
     ccgcccagtt gctgttcggg ttcccaactc gcacgaaact ccctgttcac cgaagcaaat      4020
     ttgctgagga atggaggaat cgcgccatta gtagcgacca gaaggcagcc acgctgcggg      4080
     agaaagcaaa aaagcggtac gacactggag cagcacttct accggggtta caacctggga      4140
     acgttgttag agtccagcat ccccaaacaa agcgatggag tacgctcgcc gagatcctgg      4200
     aacgattacc gcggagtcgt agctacctcc tccgtaccga gtcggggggt accatcagac      4260
     ggaacagacg cttcctgcgc ccattcaacc catgcagctc ggaagcgcag aggcaagcta      4320
     cgccgccccc gaaggagcat gagcaagcag cacccttacg acgatccaca cggcagaggc      4380
     gaccaccggc tcgattcgcg gacaccgttg gattggtccc gagttccaat cttaagggag      4440
     ggca                                                                   4444
//
ID   Gypsy-37_SiCu-LTR repbase;    DNA;    INV; 310 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-310
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5114-5114 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 310 BP; 85 A; 75 C; 67 G; 83 T; 0 other;
     tgaggtatta ggctctagca tgccccgaga agtccgccag ggcttgagtt acgcgcaggc        60
     tgctcggctt ggttgcagca tgcggcagaa cattccagag aaggatgcgg cagtccaagt       120
     agcagagacg acgacgagtc gtctatcatc accaccacca ccactcattc tattctaaaa       180
     ttgtctgttc attctgtgtg agataattca tgtttcttgt gttgaataaa aaagacagtt       240
     aacttaacaa ctattcttta accgtgttca cccccacaat ttattaacgc catcatgtgg       300
     cgatataaca                                                              310
//
ID   Gypsy-37_SiOr-I repbase;    DNA;    INV; 4101 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4101
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 371-371 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..3897
FT                 /product="Gypsy-37_SiOr-I_1p"
FT                 /translation="MAASISQVANVKPFDGNGYSNWEFRVKLCLEQHGVLE
FT                 VIETEPPQDPADLASFKKNDVKARNIIVQFLADNVLEMVKSKRTAKEIMEE
FT                 LSGTFKTQGIANQIMLQRKLRNMKFTGKEKLSTFLFDFEKTITEIKNSGGS
FT                 IDNSEIITQLLAAMPESYQVVSTAIDVVFCQGNTNITLDFVKNKLLMEESR
FT                 QEKQREEQSGEEVQAFVSKKKNFKKYQGKTRENYSEKSEFPFKCYNCGEKG
FT                 HKRVDCKKKRVEKQQKFVGNVAETDENEDIAFLSSENVINSNRMNEISFVI
FT                 DSGATNHLITSKAEQFLTDIINVDLDIKVAKQGEVIKAYKQGNLCLLNTNG
FT                 MKIKLKDVLVCRNLSHNLMSVKRIEQSKLKVIFENGIVSIMKQEKKITQGK
FT                 LVGNLYYINFEIQMNEVNLLDVDNDLMHRRMGHSSMYPTKSICETCLQGKQ
FT                 TKLSYRSLEEERKPKRMFEVVSSDVCGPITPISHDGKRYFVLFIDHYSHFT
FT                 VGYTLTHKNEVFEKFKTYLAMIKTKFSCNIKHLRCDNGGEYISKNFKELCQ
FT                 KEGIEVQYTIPYNPQQNGIAERYNRTVMERARCLIYEANIDKKFWSEAILT
FT                 AIYLINRTRTTVLKADKTPAEHWYQRKLNLDKIKVFGCDAYVHVPKEERHG
FT                 KLDAHSRKMILMGYTANGYRLWDPKKEKIITSRDVIFDEKLRIKTISGTVQ
FT                 DIDQEVDLENIEDQKNNSSSEEDQDITNEIRKSTRKRQKPKYLENYDVDFE
FT                 SNLMAALTTGNLLSEVPESFEEAIKDKNWKTAIDEELNSLKERETWQLVEL
FT                 PENEEIIDSKWVFREKIINSVVVKKARLVARGFKQSALDEEVYAPVARLAT
FT                 IRVLLSLYLELNLYVQQLDVNCAFLYGTLQNPVFMKQPEGLNENPKLICKL
FT                 TKSLYGLKQAPKTWNDLFHKKLTDLGLQRSKKDPCFYFNQVTFLLVYVDDV
FT                 ILFSKHQQNLDYIKLELSKDFKMKEFENSKLMFLGLEIKKYENELYITQKD
FT                 LIRKTLDRFNMTQSKFAEIPMQSKLQLKIDDNVTDVNLPYRELIGCLMYIM
FT                 LGSRPDLCYCVTYFSQFQNNYSQEHWKHLKQVLRYLNQTKDYGLKFTKSYN
FT                 SEITLKSYVDADFANNVIDRKSISGFVIKLNNNVIFWKTKKQNVVTLSSAE
FT                 SEYVALSLCITENLYLGQMLSEILNINVFPITIYEDNQSCIKMAMTFESKR
FT                 TKHIDIKHHFIRDCIRENKVKLLYISTEMQQADIFTKALPKIKFCYFRDCL
FT                 NVVLV"
XX
SQ   Sequence 4101 BP; 1689 A; 498 C; 743 G; 1171 T; 0 other;
     ggttatgggc ccaggcaccc aaacatcgga aaaagtgaac gaaattaaag gttttattgg        60
     gaagtagcta acggaagaaa gttctggtaa aaagacaaaa tggcggcatc gatttcgcag       120
     gttgcaaatg taaaaccttt tgatggaaat ggatattcca actgggaatt tcgagtaaag       180
     ttgtgtctcg aacagcatgg agtattagaa gtaattgaaa cagaacctcc acaagatcca       240
     gctgatttgg caagtttcaa gaagaatgac gtaaaagcac gaaatataat cgtacaattt       300
     ctggcagata acgtattaga aatggtaaaa tccaaaagaa cagccaaaga aattatggaa       360
     gaattaagtg gaacatttaa aacacaagga atagcaaatc aaataatgtt acaaagaaag       420
     ttacgtaaca tgaagtttac aggaaaagaa aaactaagta ccttcctatt tgattttgaa       480
     aagacgatta ctgaaatcaa gaacagcggt ggatcaattg ataactcaga aatcataacc       540
     cagttacttg cagcaatgcc cgaaagctat caagtagtat caacagctat tgacgtagtt       600
     ttctgtcaag gaaacacaaa tataactcta gactttgtga agaacaaact gttaatggaa       660
     gaatcaagac aggagaagca aagagaagaa caaagtggag aagaagtaca agctttcgta       720
     agtaagaaga aaaatttcaa aaagtatcaa ggaaaaacaa gagaaaacta ttcagaaaag       780
     tcagaatttc cttttaaatg ttataactgc ggcgaaaaag gacacaaacg agtagactgt       840
     aagaagaaaa gagtagaaaa acagcaaaag tttgtaggca acgtggcaga aacagatgaa       900
     aatgaagaca tagcattttt atcatcagaa aatgtcataa attccaaccg aatgaacgaa       960
     atatcttttg ttattgacag tggtgctaca aatcacttaa ttacctcaaa ggcagaacaa      1020
     tttttgacag atatcataaa tgtagatctt gatattaaag tagccaaaca aggagaagtg      1080
     attaaagcat ataagcaagg aaatctttgt ttattgaata caaatggtat gaaaataaag      1140
     ttgaaagatg tacttgtatg tagaaattta tcacacaacc taatgtcagt aaaaagaata      1200
     gaacaaagca aactaaaggt aatatttgag aatggaattg taagtattat gaaacaagaa      1260
     aagaagataa cacaaggtaa gctagtagga aatctatact atatcaattt tgaaatacag      1320
     atgaatgaag taaatttatt agatgtagat aatgatttaa tgcatcgtag aatgggtcac      1380
     agttcaatgt atcctacaaa atcgatatgt gaaacatgct tacagggaaa acaaacgaag      1440
     ttatcttata ggagtctgga agaggaaaga aaaccgaaaa gaatgtttga agtagtgtca      1500
     tcagacgtgt gtggaccgat aacacctata tctcatgatg gaaaaaggta ttttgtgttg      1560
     tttatcgatc actattcaca ttttactgta ggttatacgt taacacataa aaatgaagta      1620
     tttgaaaaat ttaaaacata cttagccatg atcaagacaa aatttagttg taacataaaa      1680
     catctaagat gtgataatgg tggcgagtat atatcaaaga attttaaaga attatgtcaa      1740
     aaagaaggaa ttgaagtaca atataccata ccctataatc ctcagcagaa tggtatagca      1800
     gaaaggtata acagaacagt aatggaacgt gcaagatgtt taatatatga agccaatatt      1860
     gataaaaagt tttggagtga agctatattg acagcaatat atttgattaa cagaacacgc      1920
     acaacagtac taaaagctga caagacccca gctgaacatt ggtatcaaag aaaactaaat      1980
     ttagataaaa taaaagtttt tggatgtgat gcatatgtac atgttcctaa ggaagaaaga      2040
     catggaaaat tagatgcaca ttcaagaaaa atgatattaa tgggatatac agcgaatgga      2100
     tatagactat gggatcctaa gaaagagaaa ataataacat caagagatgt aatttttgat      2160
     gaaaagttga gaataaaaac aatatctgga acagttcaag acatagatca agaagtagac      2220
     ttagaaaaca tagaagatca gaaaaataat agttcaagtg aagaagacca agatataact      2280
     aatgaaataa gaaaaagtac aagaaaaaga cagaaaccca aataccttga aaattatgat      2340
     gtagattttg aatccaactt aatggctgcc ttaacaactg gaaatttact atctgaagta      2400
     ccagagtcgt ttgaggaagc tataaaagac aagaattgga agacagcaat tgatgaagaa      2460
     ctcaactcac tcaaagaaag agaaacatgg cagttagttg aactaccaga aaatgaagaa      2520
     attatagact caaagtgggt gtttcgtgaa aaaataatca atagtgttgt ggtgaaaaag      2580
     gctcgactag tggcacgtgg ttttaagcaa agtgcattag atgaagaagt atatgcacca      2640
     gtagctcgtc tagctacaat tcgtgtttta ctatcactct acctagaact gaatttatat      2700
     gttcaacaac tagacgttaa ctgtgcattt ctttatggaa ctcttcaaaa tccagtattt      2760
     atgaaacaac cagaaggttt gaatgaaaat cctaaactta tatgtaagtt aacaaaatct      2820
     ttgtatggct taaaacaggc accaaaaact tggaacgatt tatttcataa aaagcttact      2880
     gatttaggtt tacaaagatc aaagaaagat ccatgttttt actttaacca agtaacgttt      2940
     ttattagttt atgttgatga tgtgatttta ttttctaagc atcagcaaaa tttggattat      3000
     ataaagttag agctttctaa agactttaaa atgaaagaat ttgaaaattc aaagttaatg      3060
     tttttaggat tagaaattaa aaagtatgaa aatgaactat atatcactca aaaagatttg      3120
     ataagaaaga ctttagatcg ttttaatatg acacaatcaa aatttgctga aataccaatg      3180
     caatcgaagt tacaattaaa aatagatgat aatgtaacag atgtaaactt accatataga      3240
     gaactgatag gttgtcttat gtatattatg ttaggctcta gaccagattt atgttattgt      3300
     gttacttatt ttagtcaatt tcaaaataat tattcacaag aacattggaa acatttaaag      3360
     caagttttaa gatatttaaa tcaaactaaa gattatggtt taaaatttac aaaaagctat      3420
     aattcagaga taacgttaaa atcttatgtt gatgcagatt ttgcaaataa tgtaattgat      3480
     agaaaaagta ttagtggttt tgtaataaaa ttaaataata atgttatttt ttggaaaact      3540
     aagaagcaaa atgtagttac attatcaagt gcagagtctg aatacgtagc tctatcattg      3600
     tgtataactg aaaatttata tttaggacaa atgctttcag aaattttaaa tataaatgta      3660
     tttcctatta cgatttatga agataaccag tcttgcatta aaatggctat gacatttgag      3720
     tcgaaacgta caaagcacat cgatataaaa catcacttta tacgtgactg tattagagaa      3780
     aacaaagtta agttattgta catctcgaca gaaatgcaac aagcagacat ttttactaaa      3840
     gccttaccaa aaattaagtt ttgttatttt agagattgtt tgaatgttgt tttggtataa      3900
     attaatacac aagcaattgt tataaatgtt tatttggttt aacgatattt taatttgatt      3960
     tcaatgtata aaaatgataa gaaattattg tttaatgttt tgtaacattt aggttatagt      4020
     aaatattgaa atttgaaggt tattagagag atgtcaaaaa ctagggattt tagtatgtaa      4080
     gtttgtagta ttgaaagggg g                                                4101
//
ID   Gypsy-37_SiOr-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-211
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 405-405 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 211 BP; 79 A; 29 C; 38 G; 65 T; 0 other;
     tgttgatgac aatactaaga attactggtt gcataaccag attagtagtt agtaatctgt        60
     ggatgtaaaa aagaacatta aaaaaaaaga acgcgagaag tcgtagtctg aacacagtct       120
     gaagaactta ttgtttattg ttaaaccaat tagaagctat aaataaatac gttttctttc       180
     gattcactga gtttgactgt gccattcaac a                                      211
//
ID   Gypsy-37_SpEx-I repbase;    DNA;    INV; 5652 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5652
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4106-4106 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           629..1789
FT                 /product="Gypsy-37_SpEx-I_1p"
FT                 /translation="MCDVLEQNYVLLVEIRSYLVKKGQSRYKGNVIVAKLQ
FT                 QAKIIFDKCCEIFLLLEKNKDINLTATIELYERIKQKYEEINKLCIAPVTV
FT                 ELGKMDFDLKVACSLIPVMDGIEATTKRLIDSVEMYAGMLDEPGKALLITF
FT                 VLKSRLNENAKLRISSSYKNIQNLIDDLRKYLLPKKSYMAIQTQLHNIQQG
FT                 SKSIEDYGSEVEKLFTELTITQAEGKSDAFAILKPINESFAIKRFSDGLRS
FT                 SKLSTIISARGFSSLKDAIQAAKDENCTSFQPTGNILHASEHGQGSHNIRR
FT                 SQGFQRGTLRGQYINNYSRGHYNRNNNFNRGQGFRGNFRGNYRSSFNSQRG
FT                 SRGSRYFRNRGRGRNVLSVEQVNDNKSHSDKKENLETPNQFFRS"
FT   CDS           1764..5447
FT                 /product="Gypsy-37_SpEx-I_2p"
FT                 /translation="KHQISFFDLKHFILSCQGNAKYITFYIKNIKYYWLID
FT                 TGASLSIIKNEMLPKDVIVLKDNTLINGIGGQRRSQGSVNLLLKHGNATFQ
FT                 HNFLVFGSLPLSLKADGIIGLDFLEKFRANINIDSNLLTLTNNNKQHYLQF
FT                 VDEHDKVKNALIIPARSESIHYIFVNDCINGEVVVCGRELVKDVLLANAIA
FT                 KVKNNRIPVKILNISDKDVNLPSFTPDLLNLDNYNICQFNTNNIDVTRVQT
FT                 LLSELKLNYLDGEKKQSIEAICAKYSDVFYLKGDKLTTTNIYEQSIVIKQN
FT                 ATPVYVKPYRLPQALKPEIAKQIDKMLQNDIIEESNSEWSSPILLVPKKSS
FT                 EEKWRLVIDYRKLNEVICDDKFPLPNINEILDSLTGAIYFSHLDLHQGYYQ
FT                 VNLEPSSRKLTAFTTNTGQYCMKRLPMGLKISPSAFSRMMSVAMSGLTFDK
FT                 CLVYQDDLIVFGRNLSSHNRNLISVMERLRKVNLKLNPQKCEFLKKEILFL
FT                 GHVVSEKGVLPDPEKTKVLKNYPTPKNADEVKRFVAFCNYYRKFIRNFSDI
FT                 AMPLNKLSRKNEPFIWSSECQHAFEFLKNALISSPILQYPDFSENHEFILQ
FT                 TDASGTAIGSVLCNKDLRPVAYASRPLNKAEKNYPTIQKELLAIVWSVKYF
FT                 RPYLYGTKFTIMTDHQPLIYLFGMRDPSSRLLKFRLTLEEYNFKIVYIKGK
FT                 DNVAADALSRVCITSDELKSMNEQVMAVTTRAQKKRMNELSERKSMSEDEK
FT                 KVLNKSIDNWPDQPRVADILRKPRDSVEMSLIEGKKLKRFRDNGIVTKEFE
FT                 CFVFIENKKTLYINLDFKAHFSRAEFVQKLSNFCEKIRIEEVCIIKNNGNI
FT                 EFIKSICDEIKTLTNWSGPRICILRGIKRITDDNEKTIIMNDYHLLPSSGH
FT                 AGVRRMVNTIKRRYYWPSIDKDVQEYVKKCTKCQKSKYFRYIKEPMEITTT
FT                 ASSAFEKIFLDVVGPLDRDENGNCYILTMQCELTKFVQAIPLQNKETVSIA
FT                 DAFVRQFILRFGIPQTIATDRGTEFISATMEQVCKILNIEKLSSTAYHHQS
FT                 IGALENAHKTLGAFLRIQCGNHTDTWSYWLPFWCFSFNNTVHSETNYTPYE
FT                 LVFGKLCRIPNSICDNVEPLYNIENYPLQLKYRLQLAHADAKNNLLLNKHK
FT                 RKEIYDRSVNPTKYEKDDLILLKNEACSKLDSLFEGPYTVVEDLGCNVKIN
FT                 KKNKIELVHKNRTRPFCQ"
XX
SQ   Sequence 5652 BP; 2044 A; 836 C; 1042 G; 1730 T; 0 other;
     tggcgaccct tgcctaggga ctctgctaag ggggattgtc agtaaagtta ctagtatttc        60
     gttcctagtt ttttcagcac atatattgaa aataaaatgt gtcggtcaac cgtcgaaaaa       120
     gaagaggttt ttctcagcca aaacgcggct ggaggtaata atgacgccac gctgaaggaa       180
     attggaggcc atgtggaaaa gacgagcatc gtgatctata ttattctggc cttcattgga       240
     atcttggtag cgtattttgg cctgcgtata tacaggaact gccaccgcac ttggatccag       300
     caggaaattg ggatgagtaa catggcaaaa atcagggcat cgatcagagg acgcacttca       360
     ggtaccgaag atcagaatta atcaagtgaa ttacgagagt ttatgtatct tttcatttta       420
     tttttacgta aagtatcaac gagtgtgcta gttacgcggt atcatatttc ataacgcaaa       480
     aacttaaaga cgctaaaacc gtgcactaag taacagctat atgacaccta acggaaacaa       540
     aatgcaacgt ggacatttgt actgtattgt gaattgcgac atagaataat gtattacatt       600
     tacgtaattc tatttttaga ttaagactat gtgtgatgtt ttagaacaaa attatgtatt       660
     gttagtagaa attcgtagtt atttagttaa aaagggacaa tctagatata aaggtaatgt       720
     tattgtggca aagttacagc aagcgaaaat aatttttgat aaatgttgtg aaatattttt       780
     attattagaa aagaataagg atattaattt aacagcgaca atagagcttt atgagagaat       840
     taaacaaaag tacgaagaaa taaataaatt gtgtattgct cccgttacag tagaattagg       900
     aaaaatggat tttgacttga aagttgcgtg tagtttaatt ccagttatgg acggtattga       960
     ggccaccacc aagcggttaa tagactccgt ggagatgtat gctggcatgc tggatgaacc      1020
     aggtaaggca ttattaatta ctttcgtttt aaagagtagg ctgaatgaaa acgccaaatt      1080
     gagaatttcc agctcataca agaatattca aaatttaata gacgatttga ggaaatatct      1140
     tttacccaaa aaatcttata tggccataca gacgcagctt cacaatattc aacaaggttc      1200
     gaagtccatc gaggactatg gctctgaagt agaaaagtta ttcacagagc taaccatcac      1260
     ccaggcagag ggaaagtcgg acgcatttgc tattttaaaa ccgatcaatg aaagttttgc      1320
     tatcaaacgg ttttcagatg gcctgcgtag ctcgaaacta agcaccatca tctcggcgcg      1380
     cggcttcagc agtttgaaag atgccataca agcagcgaaa gatgaaaact gcacgtcttt      1440
     ccaaccaaca ggtaacattt tgcatgcatc tgaacatgga caaggttcac ataatattag      1500
     gcgctcacaa ggttttcaaa gaggcacttt acgtggtcaa tatataaaca attactcgcg      1560
     tggacactac aatcgtaata ataatttcaa ccgaggacaa ggatttcgtg gaaactttag      1620
     aggcaactat cgctcatcat ttaatagcca acgaggtagt aggggttcta gatattttag      1680
     gaaccgtggc cgaggccgca atgtgttatc agtagagcag gtaaatgata ataagagtca      1740
     cagcgacaaa aaggagaatt tagaaacacc aaatcagttt tttcgatctt aagcatttta      1800
     ttctatcatg ccaaggtaat gcgaagtata taacttttta cattaaaaat attaagtact      1860
     attggcttat tgatactggt gcttcattat caattatcaa aaatgaaatg ttaccgaaag      1920
     atgtaattgt tcttaaagat aatactttaa taaacggaat aggtggtcag cgacgttcac      1980
     aaggttctgt aaacttatta ttaaagcacg gcaatgccac atttcaacat aattttcttg      2040
     tttttggttc gttaccacta tcattaaaag ctgacggcat tataggctta gactttttag      2100
     aaaaatttcg agcaaatatt aatatagatt caaatctttt aacgctaact aacaataata      2160
     aacaacatta ccttcagttt gttgatgagc atgataaggt gaaaaacgct ttaattattc      2220
     cagcacgttc ggaatcaatt cattacattt ttgtgaatga ttgcataaac ggagaagttg      2280
     tagtatgtgg tagagagtta gtgaaggatg tgcttttggc gaatgcaata gcgaaagtta      2340
     aaaataatag gattccggtt aagatactta atattagtga caaggacgta aatctgccat      2400
     cttttactcc tgatttgctt aatttagaca actataatat ttgtcaattt aatacaaata      2460
     atatcgacgt tactagggtt caaactttat tatctgaatt aaaattaaat tatttggatg      2520
     gagaaaagaa acaatcaatt gaagcgatat gtgcaaagta ttcagatgtg ttctatttaa      2580
     agggagacaa gttaacaaca accaatattt atgagcaatc tatagtaatt aaacaaaacg      2640
     ctactccggt ctatgtcaag ccgtataggt taccacaggc attaaaacca gaaatagcta      2700
     agcaaattga taaaatgtta caaaatgata ttatagaaga gtcgaatagt gagtggtcca      2760
     gtccaatttt attagtacct aagaaaagca gtgaagaaaa atggcgttta gttatagatt      2820
     atagaaagtt aaatgaagtt atttgtgacg ataaatttcc tttaccaaac atcaatgaaa      2880
     ttttagattc tcttactgga gccatttatt tttctcacct tgaccttcac caaggatatt      2940
     atcaagtgaa tttagagcct agtagtcgta aattaacagc attcactaca aatactggtc      3000
     aatattgcat gaaacgttta ccaatgggtt taaagatcag tcccagtgct tttagtcgca      3060
     tgatgtctgt tgcaatgtct ggtttaacct tcgataaatg tctagtatat caagacgatt      3120
     tgattgtatt tggaagaaat ctatctagcc acaatcgaaa tttaataagt gtgatggaaa      3180
     gactaaggaa agtaaattta aaacttaatc ctcaaaaatg tgagtttttg aagaaagaaa      3240
     ttctttttct aggacatgta gtttcagaaa aaggcgtatt accagatcca gaaaaaacta      3300
     aagtattaaa gaattatcct actcccaaaa atgcagacga agtaaaacgt ttcgtagctt      3360
     tctgtaatta ttatcgtaaa tttatcagaa atttctcaga tatagctatg cctttgaata      3420
     aattaagtag gaagaatgaa ccctttattt ggtcaagtga atgtcaacat gcttttgaat      3480
     ttttaaagaa cgctttaata tcatcaccta ttctacaata tcctgatttt tctgaaaatc      3540
     atgaatttat tttacaaaca gatgcgtcgg gtactgctat aggttcagtt ttatgtaata      3600
     aagatcttag accagttgca tatgcaagta gacccttaaa taaagcagaa aagaactatc      3660
     ccactattca aaaagaactt ttagcaatag tgtggtccgt taagtatttc agaccatatt      3720
     tgtatggaac taaatttaca ataatgactg atcatcaacc tttgatatat cttttcggta      3780
     tgagagatcc atcaagcaga ttacttaaat ttcggttaac tttagaagaa tataatttta      3840
     aaatagttta cataaaaggg aaagacaatg ttgcggcaga tgccttatct agagtttgta      3900
     ttacgtcgga tgagcttaaa agtatgaatg aacaagtaat ggctgtaaca accagagcgc      3960
     aaaagaaaag aatgaatgag ttaagtgaga ggaagagtat gagtgaggat gaaaagaagg      4020
     ttcttaataa atccatagac aattggcctg atcaaccaag agttgcggat attttaagaa      4080
     aaccgcgtga ttcagtagaa atgagtttaa ttgaaggcaa aaaattaaaa agatttaggg      4140
     ataacggcat agtaacaaag gaatttgaat gtttcgtatt tatagagaat aagaagactt      4200
     tatacattaa tcttgatttc aaggcacatt tctcgcgagc cgaatttgtg cagaaattaa      4260
     gcaatttttg tgaaaagata cgtatcgaag aagtgtgtat aataaaaaat aatggtaata      4320
     tagaatttat taaaagtatt tgtgatgaga taaaaacact tactaattgg tccggaccac      4380
     gaatttgtat attgcgaggt ataaaacgaa taaccgatga caatgaaaag actattatta      4440
     tgaatgacta tcatctactg ccatccagtg gccatgctgg agtgcgcaga atggtaaata      4500
     ctatcaaaag acgatactat tggccaagta tcgataaaga tgtccaagaa tacgtcaaaa      4560
     aatgtacgaa atgtcaaaaa tcaaaatatt ttcgctacat taaagaaccg atggaaatta      4620
     ccacaacggc ttcgtcggca tttgaaaaga ttttcttaga tgttgtgggt cctttagata      4680
     gagatgaaaa tggtaattgt tatatattga ctatgcagtg cgaattaact aaatttgttc      4740
     aagctattcc tttgcaaaat aaagaaacag tgtccattgc agatgcgttt gttagacagt      4800
     tcatattaag atttggtatt ccacaaacaa tagctacgga tcgaggaaca gaatttattt      4860
     cggcaactat ggaacaggtt tgtaaaatac tcaatattga aaaattatct tctacagcct      4920
     atcatcacca gtccattgga gctcttgaaa atgctcataa aaccttgggt gcatttttaa      4980
     gaatccaatg tggaaatcat acagatacat ggagctattg gctaccattt tggtgtttta      5040
     gttttaacaa taccgttcat tctgaaacaa attacacgcc atatgaactc gtttttggaa      5100
     aactttgtag aataccgaac agcatttgtg ataacgtaga accattgtac aacatagaaa      5160
     attatccatt acaactaaaa tacagattac agttagctca tgccgatgct aagaataatt      5220
     tgttattaaa taaacataaa cgtaaagaaa tatatgatag atctgtcaat cctacaaaat      5280
     atgagaaaga tgatttaatt ttattaaaaa atgaagcatg tagtaagcta gattctcttt      5340
     ttgaaggtcc ctatacagtc gtagaagatt taggatgtaa tgtgaaaata aataaaaaga      5400
     acaaaattga actagtacat aagaatagga ctagaccttt ttgtcaatag atttatataa      5460
     tgtaagattc tattatgatt tagaaaacat tgcaatgttt aattataagg ataaataagt      5520
     aaccttaata tttttaatac atctttctaa acttgttatt tttagataaa tccttaatca      5580
     ttaattaaaa caaaacaaaa ttaaaaaata tatataattg ttattttttt ttctcttttt      5640
     gtccccggga gg                                                          5652
//
ID   Gypsy-37_SpEx-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4166-4166 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 209 BP; 62 A; 39 C; 29 G; 79 T; 0 other;
     tgaagtgtag gactattaat atagtgtaat atgtatgctc ctttacttta gttagtaagt        60
     acactccttt ataattactg ttatttgctt agtttgcact aacctcatat gcgcatattt       120
     tataataatt caatggcatt caataaacag tactctactt atgtggttgt ttcctttgaa       180
     accacccttt agggaccccc aacataaca                                         209
//
ID   Gypsy-37_TrNi-I repbase;    DNA;    INV; 4893 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4893
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 240-240 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..4242
FT                 /product="Gypsy-37_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEVLLSRVLATQQTPLLSTNRTTLLKFDPEEPDSDID
FT                 GWCKVTDFIVQNKNLEGVNLLIALTEALKGSAAACLTKLNLDDITWESVKE
FT                 ILIARFSKPKLLQDYFDEVLRFQIGAKETASESALRLWNLIERIPESTMSE
FT                 KVITGFVISVLCQKDSLIRRELNSQTITTRAQLFRVLGGVSFKRRMDTEVQ
FT                 EPEAKRARLMDKFNGKCHYCGLLGHRIADCRKRRDEIRMKTQDTSSSSRVV
FT                 EKRTTPTCYKCGQPGHVATVCPDRKNGGETAVKEVHQCQHRPSRSILETSS
FT                 GERVPFLFDSGSSCSLLKESFCDKFAGTVRKNLVYLRGIGGEDIECTTQIQ
FT                 SDVVIDKLSVNLTFHVVPERLISDPIIVGRDIFDQGLCVKIDNNNLMFFYK
FT                 KTSHFCDLKSNKPDFTKINTDLLGQNREVLISILNKYSDYFTEGVPSRRVT
FT                 TGECQINLIDPHKTVQRCPYRLAPAEKLIVREKVQELLDAGVIRESSSPFA
FT                 SPILLVEKKDNSYRMCVDYRELNSNTRPEHYPLPRIEEQIDQLAGANYFSS
FT                 LDMASGFHQILMHPDSIEKTAFVTPEGQFEYLAMPFGLRNAPSVYQRCITR
FT                 ALSHLKDKPLIYMDDVLCYSTGITEGLQRLDDSLGALTEAGFTFNLQKCKF
FT                 MTQRIEYLGYSLQSGEVRPNSRKIQALADAPQPKTATQVRQFLGLASYFRK
FT                 FIPNFTRIVGPLYPLTKLRGPITWTQKHEDIRNDIIRILTSEPVLTIFDPE
FT                 LPVELHTDASSEGYGAILIQRIDNTPHVVEYYSRRTSDVESRYHSYELETL
FT                 AVVRAVEHFRHYLYGRHFEVYTDCNSLKASKSKKDLTPRVHRWWAILQAYD
FT                 FEIIYREGRGMEHADYFSRNPLPDANDGGVACGSPLTQQVQYAELHHDWLS
FT                 VEQKRDSEIQDLISKHDSNSFPDTVAQTYDVRDSILYRKIVRNKTVSWLPV
FT                 VPRSLIWTLINHVHNELQHLGKDKTLDKLYEQYWFPEMSKCVRKFIDSCII
FT                 CKASKGPSGAQPVQLHPIPKASVPWHTIHIDFTGKLSGKSDRKEYCSVIID
FT                 GFTKYTLLEHTTSLDAKSAVKALQKSVYLFGTPKRIIADQGRCYVSSDFKN
FT                 FCDEHKIDLHLIATGSSRANGQVERVMRTLKSLLTMVENDPNKTWRDEIGN
FT                 IQLALNSTRSSVTKYSPTELMLGIRAQSLGISKLNSEAHNQPERLNLDAVR
FT                 NDASANIQKAAENETKRFNQGRAKIKAFSKGDYVFLKSSERNQTKLDRKFK
FT                 GPFVITAVLNNDRYELKRLGGSHRIYKYAHENLRSVPRGHEGLLEVASSLL
FT                 NYDEAESAPEDVDAGNGNDFLSTNDSDTLTACSDTITAGSSTITGNSDTLS
FT                 AHSDPETWDVDGEVEVWDKQDIPQS"
XX
SQ   Sequence 4893 BP; 1415 A; 1014 C; 1151 G; 1313 T; 0 other;
     tcagaagtgg gatccgacgg gaagcagaat gcagcgaagc aatcggattc tagaactgct        60
     gagaagctat taagcagcat ggaagtgttg ctctctcgag ttttggccac ccaacaaaca       120
     cccctgctga gtacaaatcg tacaactctt ttgaagtttg acccggagga gcccgactcg       180
     gatattgatg gatggtgtaa agtgactgat tttattgtgc aaaataaaaa tctggaaggt       240
     gtcaatttac tgatagcgtt gacggaggcg ctgaaaggta gtgcagcagc gtgtttaacg       300
     aagcttaatt tagatgatat tacatgggaa tcagttaaag aaattctaat tgcaagattt       360
     tcaaaaccca aacttctgca agattatttc gatgaggtgc tacggtttca aataggcgct       420
     aaagagactg cgtctgaatc tgcccttagg ctatggaatc tgatcgaaag aatacctgaa       480
     agtacgatgt ctgagaaggt aattactgga tttgtgatat ctgtgttgtg tcagaaggac       540
     agtttgatac gtcgtgagct aaactctcaa acaataacga cgcgagctca gttatttcga       600
     gtacttggtg gagtatcatt taagcgacgc atggacaccg aagtccaaga acctgaagca       660
     aaacgtgctc gtttaatgga caaattcaac ggaaaatgtc actattgtgg gttactcgga       720
     caccgtatcg ccgattgcag aaagcgtcga gacgaaatca gaatgaagac tcaagatact       780
     tcgagttcct cgcgagtcgt agagaaaagg acgaccccga cctgctacaa gtgtggtcag       840
     cctgggcacg tggcaactgt ctgtccagat aggaagaacg gcggtgaaac tgccgtcaag       900
     gaggtccatc agtgtcaaca ccgcccctcc aggagcattt tggagacatc ctctggtgag       960
     cgagttcctt tcttatttga tagcgggtcc tcatgttctc tgttaaaaga aagcttttgc      1020
     gataaatttg cgggtactgt gcgtaaaaat ctcgtttacc tgaggggcat aggtggtgaa      1080
     gacatagaat gtacaacaca aattcaaagc gatgtagtca ttgataaact ttcagttaat      1140
     ttaacgtttc acgtagttcc tgagaggctt atttctgatc caattatagt cgggcgggat      1200
     atttttgatc aagggttgtg tgtcaaaatc gataataaca atcttatgtt tttttataag      1260
     aaaacgagcc acttttgtga tttaaaatca aataagccgg attttactaa gattaacacg      1320
     gatttgctag gacagaatag agaagtgcta atatcgatct taaacaaata ttctgattat      1380
     tttaccgaag gcgttccttc ccgtagagta acaacaggcg aatgtcaaat taatttaata      1440
     gaccctcaca aaaccgtaca acgatgccct tatcgcctag cgccggcgga aaaacttata      1500
     gttagggaaa aggttcagga attacttgac gctggggtca ttcgcgaaag ctcttccccg      1560
     tttgccagtc caatactatt agttgagaaa aaggacaact cgtataggat gtgtgtggac      1620
     tatcgagaat taaattccaa tacgcgaccc gaacactacc ctctgccacg tattgaggag      1680
     caaatagatc agctggcagg agctaactat ttttcctctc ttgatatggc gtcaggcttt      1740
     caccagattt tgatgcaccc tgattccata gaaaagaccg cgttcgtaac acctgaggga      1800
     caattcgagt atcttgctat gcccttcggg ttacggaatg ctccctcagt atatcagaga      1860
     tgcataacta gggctttgag tcacttaaaa gacaaaccac tcatttatat ggatgacgtt      1920
     ttatgttact cgactggcat cacagaaggt ttgcagcgtc tagatgatag tttaggtgct      1980
     ttaacggagg ctggatttac gttcaatctc caaaaatgta aatttatgac ccaaagaata      2040
     gaatatctag ggtattccct tcaatctggt gaggtcagac cgaattcaag gaaaatacaa      2100
     gcattagcag atgctcctca accaaaaact gctacccagg ttcgacagtt cctgggttta      2160
     gcctcatatt ttagaaaatt cataccaaat tttacacgta ttgtgggacc attatacccc      2220
     ctaacaaagc taagaggacc tattacatgg actcaaaagc atgaggacat acggaacgac      2280
     ataatacgta tactcacatc tgagccagtt ttaactattt ttgacccgga attgccagta      2340
     gagttgcaca ctgatgctag ttctgagggg tacggagcga ttctcataca acggatagat      2400
     aacacaccgc acgtcgtgga gtattacagt cgtcgaactt cagacgttga gtcccgatac      2460
     cactcgtacg aactggagac gttggcagtt gtacgagcgg tcgagcactt tcgccattac      2520
     ctttacggtc gtcatttcga ggtgtataca gactgtaatt cgctcaaggc gtccaaatca      2580
     aaaaaagatc tcacccctcg cgtccataga tggtgggcta tcctgcaggc ttatgacttc      2640
     gaaatcatct atcgtgaagg tcgcggaatg gagcacgcgg attatttctc gcgtaatcct      2700
     cttcctgatg ctaatgatgg tggtgtagcc tgtgggagcc cgctgacaca gcaagttcag      2760
     tatgccgaat tgcatcatga ttggctttcg gtcgaacaaa agcgtgacag cgaaatacaa      2820
     gaccttatct caaagcacga cagcaatagt ttccccgata ctgtagctca aacgtacgat      2880
     gtgagagata gtatcctata taggaaaatc gttcgtaata aaacagtctc gtggttgcca      2940
     gtagttcccc gttccttaat ttggacacta ataaaccatg ttcataatga gttacaacat      3000
     ttaggcaagg ataaaacttt ggataaactc tatgagcagt attggttccc cgaaatgtca      3060
     aaatgcgtgc gtaaatttat cgattcgtgc attatttgca aggcatcaaa gggtccatct      3120
     ggagctcaac ccgtccagct tcacccgatc ccaaaagctt cagtaccatg gcacacaata      3180
     catattgatt ttacgggaaa gctgagcggg aaaagcgata gaaaagaata ctgttcggtg      3240
     attatcgacg gttttactaa gtacacttta ctagaacata ctacttctct tgacgctaaa      3300
     agcgcggtaa aagcgttgca aaaatcagtc tatctttttg gtacgcctaa aaggatcata      3360
     gcggatcagg gccgttgcta cgtaagttcc gattttaaga acttttgcga tgaacataag      3420
     atagatcttc atttaattgc tactggttct agccgggcta atggccaggt cgagagggtc      3480
     atgcggaccc tcaaaagcct gttaaccatg gtggaaaacg acccgaataa gacgtggcga      3540
     gatgaaatag ggaatattca actcgcgctt aatagcaccc gatcatccgt aaccaagtat      3600
     tcccctacag aacttatgtt aggtattcgt gctcagtcgt taggtatttc gaagttaaac      3660
     tcagaagccc ataatcaacc agaacgtctt aacctcgatg ctgtgcgaaa tgatgcatct      3720
     gctaatatcc aaaaggccgc agaaaatgaa actaaacgat ttaatcaagg ccgtgcaaaa      3780
     attaaagctt tttcaaaagg tgattacgtt ttcctcaaaa gcagtgaacg gaaccagacg      3840
     aaattggaca gaaagtttaa gggtccattt gttataactg cggtactaaa taacgatagg      3900
     tacgaattaa aaagattagg tggttctcac cgaatttata aatatgccca tgagaattta      3960
     cgctcagtac ctcgcggaca cgaaggtttg ctcgaggtcg cttctagcct tttgaattat      4020
     gatgaggccg agtcggcgcc agaagatgta gatgcaggga atgggaatga cttcttgtcc      4080
     acgaatgaca gtgacaccct gactgcatgc tctgacacta taactgccgg ctcttctact      4140
     atcaccggta attcagacac tctcagtgca cactcagatc ctgagacatg ggatgtagat      4200
     ggcgaagtcg aagtctggga taaacaggat attccgcaat cataggtagg tttcatgtct      4260
     tgtatttgtc ccatttattc ctttggttat tgtaagcatt attcattccg gaattgtccg      4320
     gccgaaagga gagtgtcgtc cgggccatac ccagtggggt tggttgaagg gatgcactcg      4380
     tccgatctag aagcaatacc tttatagtct atcctggtcg gagagacagt gtcgtccggg      4440
     ccatacccag tggggttggt tgaagggatg cacttgtccg gtccagatgt gatatcctta      4500
     tagtctatcc tggtcgaagg gacagtgtcg tccgggccac acccaataga gggttggttg      4560
     aagggatgca ctcgtccggt ccagatgtgt tactgttggt tgacaagacg atgggaacag      4620
     tgtcgtccgg gccagatcca ttacgggttg gttgaaggga tgcacttgtt catttcaatc      4680
     ttgtatcatg tcttctagtt gtgaatcgtg attgtctcgc gtgaatcgtg gtgtgacatg      4740
     tcgtctcggt gattgactct gtgtttgatg gtacaatcga aaacctatgt gaagtcctgc      4800
     aacaggatgg acgagcggaa gctttgatga tcaagcattg tttgttccag gaacacaata      4860
     acgcccgagg acggtcgtat gtcagtctgg ccg                                   4893
//
ID   Gypsy-37_TrNi-LTR repbase;    DNA;    INV; 370 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-370
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 194-194 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 370 BP; 103 A; 81 C; 83 G; 103 T; 0 other;
     tgtcggcgca cgttgggatg gcaatgtcaa gagtgacagc ttgtcactgt cactctagcg        60
     gagcgtcgag tcgatggtag cggggcggcc atcttggttc gacagaacgt acagagcggt       120
     cgcaggcgca ccacgttttc gacgaatcgc tatacatcat ttaaatcaaa gttctttttg       180
     aagtgattag gtattaatta gagcctcagt gattattgtt atctagttac agttttattt       240
     tcgaagtaaa atacaacgac aacaattcta aaacggtttt aattcaaata tccctacttg       300
     aaccaatcta cccacacacc cacgctgcac gatgaatgat tcagatgatg aaggccgtcc       360
     tgagctttca                                                              370
//
ID   Gypsy-37_TrVa-I repbase;    DNA;    INV; 5150 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5150
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 282-282 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           131..4807
FT                 /product="Gypsy-37_TrVa-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MAADKSDIEILTATLNAFLQKVTQPPAPGQENPTVSQ
FT                 LNLLSTQNLQFEPFDATVEPFSTYLQRLENYFALRNLTSESDADQLSKTRI
FT                 LLNSIGSKYFQLLTSLTAPQPPSTLSYVQLSKLLSEHLSPTPNIYIQQHKF
FT                 LSRSQAKTESIAQFVAALRQLSICCAFTCPHTDCKKSVSDIFLRAQFIRGL
FT                 YDPLIREKILQSSINSIEILTFEKVVELALALETSRLGNQEISNNHSNHEV
FT                 NKLISKMPQRQRTNSSNRSRKTSFTKFNSNRSRSKSNNTRVNLKKLGLDGL
FT                 CLHCGKKDHRAPDCKTPSKNLVCSNCNKTGHISKVCIYSATQRKARSSNVQ
FT                 NLSTLDSADNEYFADSGIYDPDNCSDNIWINNVMDINQNDILDAAKFLIDV
FT                 QLDGKHQTFEIDTGSPVTLLPISSFKKLNLNRQLESTNIKLKSYTGEIFMP
FT                 LGVVNVNAYFDNQTSAEKIFIVDDNRSALLGRMWIRRLNIDLNKAKKINRL
FT                 SSAEEILSIESIDNLVAKIKIDYSDLFTPKVGTLPNYKCSLQLKPKSKPVF
FT                 IKARPVPYALQPKVEQELEDLESQKIITKVDVSEWGSPLVVISKPDGNVRL
FT                 CVDYKSSVNPQLSDARYPIPRIDETINNLRNAQYYCVLDVHKAYMHLQMDD
FT                 ESAKIQTISTHKGTFKMNRLAYGIKIAPNEFHRIFDQILQNLTGFVKYFDD
FT                 IVIYGKTLEECKQRLISCLETLRKYDIHLNWNKCQWFTTSIDYLGFRISAK
FT                 GIGKCPNKVESILNAPRPKSCDEVRQFLGLITYYAKFIPEASDLTQPLRDL
FT                 LRKNQKFRWTIQCEKAFLRLKKEVTSDRVLVPFNPDLPLCIASDASPVGVS
FT                 GVLSHIINGVEHPIAFASRSLTDTEKNYSQLDKEALAIYWSFNKFFMYLYG
FT                 RKFQLITDNKPLTHIFQHDKQLPGISSARLLRYAAFLSGFDYTVKHRKAED
FT                 HANADYLSRAPWKPTEDKYDEDDDLNECTINSITNDVITFETIESETGKDP
FT                 ELSQLRKDLLEGKTLDPSLTLHQGVILKNQRVFVPEKLRPEILKELHKTHV
FT                 GITKMKSLGRKYIYWKGLDHEIESLVRSCEACSKIKKLNAPVPLHHWDEPT
FT                 RNFQRIHIDYAGPFMGHMFFILVDAKSKWPEVTIQTTAPTSTSTIRILRSI
FT                 FARHGLPETMVSDNAKIFTSAEFEEFLESKGIQHKLIAPGHPATNGLAERY
FT                 VQIIKNKLKSMSAEEGSVQDKLNDILLRFRATPLKNGKSPSELYLNRQMRI
FT                 ELDLLNPTRSETLKKRQPLLKTCFSIGDRVLARNYQGKELWRLGTVQSVLG
FT                 KVHYRILLDDGYAIKRHADQLKLTEVAPKSPEVQRSSSMENPAPRKKVSFL
FT                 LPKELSSNIPATYTAPNRELQLQNTTVPTSSSIPKHTLQDANSTQQNQQSF
FT                 CQVMEKNVLMPSTSSSPPSCQQGSSISTHGDTAPSTSRLPSCPPRTPSIVS
FT                 PRLSSPELFLTPEGQPTATVIRSPSPDIIILSPENQPQSRGTTSSRSAPRI
FT                 NISQAADNARGRGQRSARGVQRPTPTTITRSGRQVQQPRKFDI"
FT   CDS           1479..4808
FT                 /product="Gypsy-37_TrVa-I_2p"
FT                 /translation="MLNAYFDNQTSAEKIFIVDDNRSALLGRMWIRRLNID
FT                 LNKAKKINRLSSAEEILSIESIDNLVAKIKIDYSDLFTPKVGTLPNYKCSL
FT                 QLKPKSKPVFIKARPVPYALQPKVEQELEDLESQKIITKVDVSEWGSPLVV
FT                 ISKPDGNVRLCVDYKSSVNPQLSDARYPIPRIDETINNLRNAQYYCVLDVH
FT                 KAYMHLQMDDESAKIQTISTHKGTFKMNRLAYGIKIAPNEFHRIFDQILQN
FT                 LTGFVKYFDDIVIYGKTLEECKQRLISCLETLRKYDIHLNWNKCQWFTTSI
FT                 DYLGFRISAKGIGKCPNKVESILNAPRPKSCDEVRQFLGLITYYAKFIPEA
FT                 SDLTQPLRDLLRKNQKFRWTIQCEKAFLRLKKEVTSDRVLVPFNPDLPLCI
FT                 ASDASPVGVSGVLSHIINGVEHPIAFASRSLTDTEKNYSQLDKEALAIYWS
FT                 FNKFFMYLYGRKFQLITDNKPLTHIFQHDKQLPGISSARLLRYAAFLSGFD
FT                 YTVKHRKAEDHANADYLSRAPWKPTEDKYDEDDDLNECTINSITNDVITFE
FT                 TIESETGKDPELSQLRKDLLEGKTLDPSLTLHQGVILKNQRVFVPEKLRPE
FT                 ILKELHKTHVGITKMKSLGRKYIYWKGLDHEIESLVRSCEACSKIKKLNAP
FT                 VPLHHWDEPTRNFQRIHIDYAGPFMGHMFFILVDAKSKWPEVTIQTTAPTS
FT                 TSTIRILRSIFARHGLPETMVSDNAKIFTSAEFEEFLESKGIQHKLIAPGH
FT                 PATNGLAERYVQIIKNKLKSMSAEEGSVQDKLNDILLRFRATPLKNGKSPS
FT                 ELYLNRQMRIELDLLNPTRSETLKKRQPLLKTCFSIGDRVLARNYQGKELW
FT                 RLGTVQSVLGKVHYRILLDDGYAIKRHADQLKLTEVAPKSPEVQRSSSMEN
FT                 PAPRKKVSFLLPKELSSNIPATYTAPNRELQLQNTTVPTSSSIPKHTLQDA
FT                 NSTQQNQQSFCQVMEKNVLMPSTSSSPPSCQQGSSISTHGDTAPSTSRLPS
FT                 CPPRTPSIVSPRLSSPELFLTPEGQPTATVIRSPSPDIIILSPENQPQSRG
FT                 TTSSRSAPRINISQAADNARGRGQRSARGVQRPTPTTITRSGRQVQQPRKF
FT                 DI"
XX
SQ   Sequence 5150 BP; 1692 A; 1153 C; 879 G; 1423 T; 3 other;
     gtggcgacga ggataaaact taattgatcg attcgcgcgt ccgattttta cgtattcgcc        60
     gttcatatgt gtcggtcaag tgctttcgcg actcgttctc gcttttaccg gttacatctt       120
     tatttcggaa atggctgccg acaaatcgga tatcgaaata ctaacggcaa cgttaaacgc       180
     gtttctacaa aaagttactc aacctccagc acctggtcaa gaaaatccaa cggtatcaca       240
     gctcaatcta ctttcgactc agaaccttca attcgaacca ttcgatgcaa cagtcgagcc       300
     tttctctacg tatctacaac gcctagaaaa ttacttcgca ctcagaaacc taacaagtga       360
     atcggatgca gatcaactat ctaaaacgag aatcctgctc aatagtattg gatctaagta       420
     cttccaacta ctaacttctc taacagctcc gcaacctcct tctacgctat cgtatgtaca       480
     gctaagtaaa ttactatctg aacatttaag ccccactcct aacatctaca ttcagcaaca       540
     taaattctta agccgttctc aagctaaaac agaatcaatc gcccaatttg tggctgcttt       600
     acgccagctg tcaatttgtt gtgcctttac gtgcccacac accgattgta aaaaatctgt       660
     tagtgatatt ttcctcagag cacaatttat tagaggccta tacgaccctc ttatcagaga       720
     gaaaattctt caaagctcta tcaactcgat agaaattcta acgttcgaaa aagtagtaga       780
     acttgctctt gctttagaaa catctagatt gggtaatcaa gaaataagca acaatcattc       840
     taatcatgag gtcaacaaac tcatttcaaa aatgccccaa cgtcaaagaa caaatagttc       900
     taatagaagt aggaaaacat cctttacgaa gtttaactcc aaccgctcga gatccaagtc       960
     aaataataca agagttaacc tgaaaaaact agggttagat ggcttatgtc tccactgcgg      1020
     taagaaagat catcgtgcac ctgattgtaa aacaccctct aaaaatcttg tctgttctaa      1080
     ttgcaataaa acaggacaca tctctaaagt gtgtatctac agtgcaactc aacgcaaggc      1140
     tagaagctcc aacgtccaaa acctaagcac gctggattct gcggacaatg aatactttgc      1200
     ggattctgga atttacgacc cggataactg ttccgacaac atatggatca acaacgttat      1260
     ggatatcaat caaaacgaca tcctggatgc tgccaaattc ctaattgatg ttcaactgga      1320
     tgggaagcat caaaccttcg aaatcgacac aggtagtccg gttacacttt tacctatttc      1380
     atcttttaag aaattaaacc ttaaccgaca actagagtcc accaacataa aattaaaatc      1440
     ttatacaggt gaaattttta tgccgcttgg agttgtgaat gtaaacgctt actttgataa      1500
     tcaaacatct gcggaaaaaa ttttcatcgt agatgataac agatcagctt tacttggtag      1560
     gatgtggatt agacgcctta acattgattt gaataaagcg aaaaaaatta atcgcttaag      1620
     ttctgcggaa gaaattcttt ccatagaatc tatcgacaac ttagtcgcta aaattaaaat      1680
     tgattacagt gatcttttta caccaaaagt aggtactctt cccaactata aatgttccct      1740
     gcaacttaaa ccaaaatcta aaccagtttt cattaaagct cgaccagtgc cttacgcttt      1800
     acaaccgaaa gttgaacaag aattagaaga ccttgaaagt caaaagatta tcactaaagt      1860
     cgacgtctcc gaatggggat ctccacttgt tgttatttca aagccagacg gaaacgtcag      1920
     actttgcgtc gactataaat cctccgtaaa tccacaactt agtgacgcta ggtatccaat      1980
     tcctcgaatt gatgaaacaa tcaataattt acgtaatgct caatattatt gtgtcttaga      2040
     cgttcacaaa gcatacatgc accttcaaat ggacgatgaa agtgcaaaaa tccaaaccat      2100
     ttcgacccat aagggtactt tcaaaatgaa tagactagct tatggcatca aaattgcacc      2160
     aaatgaattc catagaattt ttgaccaaat tttacaaaac ttaacaggtt tcgttaaata      2220
     ttttgatgat attgtcattt acggcaaaac cttggaagaa tgtaaacaac gcttaatctc      2280
     ttgcctagaa actttgcgca aatacgatat tcatcttaac tggaataaat gccaatggtt      2340
     taccacttca attgactacc ttggttttag aattagtgcc aaaggtatcg gcaaatgccc      2400
     gaataaagta gaaagtattt tgaatgctcc tagacccaag tcatgtgatg aggtgcgtca      2460
     gttcttaggg ctgattacat attacgctaa atttatccct gaggcatctg acttaacgca      2520
     acctctcaga gacctattac gcaaaaatca aaaatttcgt tggacaattc aatgtgaaaa      2580
     agcctttttg agattaaaaa aagaagttac aagcgacagg gtacttgttc cattcaaccc      2640
     cgacttgcca ttatgcattg cttccgatgc aagcccagta ggagtgtcag gagttttgtc      2700
     tcatatcatc aacggagtag aacatccaat tgcatttgcc tctcgatcct taactgacac      2760
     agaaaagaac tactcgcagc ttgataaaga agcccttgct atttattggt ctttcaacaa      2820
     attctttatg tatctctacg gtcgaaaatt ccaacttatt acggacaata aacctctaac      2880
     gcacattttt cagcatgata agcaacttcc tggaatctct tctgctagac tacttcgtta      2940
     cgcagctttt ctcagtgggt ttgattacac cgtaaagcac cggaaagcag aagatcatgc      3000
     gaatgcagat tatttatctc gtgcaccttg gaagccgaca gaagacaaat acgacgaaga      3060
     tgatgaccta aatgaatgca ccatcaacag catcaccaac gatgtcatta cgtttgaaac      3120
     tatcgagtca gaaacaggta aagaccctga attatctcaa ttacgaaaag atttgctcga      3180
     aggaaaaact ttagacccta gcttaactct tcatcaaggg gtgatcctta aaaatcaacg      3240
     tgttttcgtt ccagaaaaat tgcgacctga aattttgaaa gaattgcaca aaacgcacgt      3300
     ggggatcaca aaaatgaaaa gtctagggag aaaatacatc tactggaaag gtctcgacca      3360
     tgaaattgaa agcctcgtgc gatcttgcga agcttgcagc aagattaaga agcttaatgc      3420
     tcctgtaccg ctgcatcact gggatgaacc aacaagaaat tttcaacgga tacatattga      3480
     ttatgcgggt cccttcatgg gccatatgtt tttcattctg gtagatgcaa aatccaaatg      3540
     gccggaggta acaattcaaa caacagctcc aacttcaaca tcaactattc gaattcttcg      3600
     aagcatcttc gctcgacatg gcttacccga aactatggtt agtgacaatg ccaaaatttt      3660
     cactagcgct gaattcgaag aatttttaga aagtaaagga atccaacata aattaattgc      3720
     accaggtcac ccggctacaa acggccttgc cgaacgctac gtccaaatca ttaaaaataa      3780
     attgaaatca atgtctgctg aagaaggatc agttcaagat aaattgaatg atattttact      3840
     acgtttccgt gctacgccct tgaaaaatgg caaatcacca tcagaattgt acctaaaccg      3900
     acaaatgcgg atagagttag atttgttaaa tccaacgcgc tcggaaaccc tcaaaaagcg      3960
     acagcccttg ttgaaaacat gcttttcaat tggagataga gtccttgcac gcaattatca      4020
     aggaaaggaa ctttggagat tgggaactgt acagtcagta cttggtaagg tccattatcg      4080
     aattttactg gatgatggct acgcaattaa acgtcacgca gaccaactaa aacttaccga      4140
     agttgctcca aaatcgccag aggttcaacg ttcaagctca atggaaaacc ctgctcctcg      4200
     gaaaaaagta tcttttcttt taccaaaaga actttcatcg aacattccgg cgacttatac      4260
     agccccgaac cgcgaacttc aacttcaaaa tactacggtg ccgacttcat cttccatccc      4320
     caaacacacc cttcaagatg caaactcaac gcaacaaaac cagcaatcct tttgtcaagt      4380
     catggaaaag aatgtcttga tgccatcaac gtcaagctcg cctccatctt gccaacaagg      4440
     atcctctatc agtactcatg gtgacacagc acctagtact tcacgtctgc cttcatgtcc      4500
     tcctcgaact ccttccattg ttagcccaag gctttcttct ccggaactct ttctcactcc      4560
     agaaggccaa ccaacagcta cagttatcag gagcccttct ccggacataa taattttaag      4620
     tcctgaaaat caacctcaat ccagagggac tacatcttca cgctcagctc cgagaatcaa      4680
     cattagccaa gcagcagata atgcaagagg tcgaggacaa aggtcagccc gtggggttca      4740
     gcgccctaca cctacaacaa ttactcgttc aggacgtcag gtwcagcagc ctcgwaaatt      4800
     cgacatttga agtattgtaa gttagaagct aaattctctc ctcaattctc caaaattttt      4860
     ttaaaaakta tctttattca acttttgcta tgttgtattg caaaaggctt aacatcgaga      4920
     cagtaaccaa atttaagaca gagttaaaga ctgattaaaa ttaattcaat tttcattttt      4980
     ttctaattcc gtaaaatggg ataatgtaac gcagattctc ccctcgctcc ctactcaggt      5040
     taattgattt tataggagcg aatccttttt ttttttgttg ttcattgtta acttatcgtt      5100
     attgtaaata cattttaaat tgcctagact caaattagcg tgggagaatc                 5150
//
ID   Gypsy-37_TrVa-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-37_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-220
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 341-341 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 220 BP; 60 A; 52 C; 33 G; 75 T; 0 other;
     tgtggtatcc gaagtgcaag ttggcaacac tgtacaacca gctgtgaagc tggggttttg        60
     tctcagctag gttatgtaat ctatctgtca ttctcaactg ctcagataca cgttttcgga       120
     agctcatatt ctacgccttt cattattatt attctacttc aatcctaaat accttatcct       180
     ttctaatcat gtcaatccac aacccgatca atctataaaa                             220
//
ID   Gypsy-380_AA-I repbase;    DNA;    INV; 6849 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-380_;
KW   Gypsy-380_AA-I; Gypsy-380_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6849
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6849
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 120-120 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6849 BP; 2133 A; 1248 C; 1692 G; 1776 T; 0 other;
     ataacttggc gcccaactac aacacacgaa aggtaatcgg aggatcgtgt agaatttaaa        60
     aatctagaga ttttttaaca ggcggcagga gagtacgcaa atttatgctt tgcgtaggat       120
     ccgtgcactt tgcaacaccg ctcgaaataa attggatcct ttttacgaat tgaaagacag       180
     tggccagttg gtgagtcgga aaagagcgca aatgtttatg cgccagtgaa attagttaaa       240
     atttctagca gaaaacttcg acaaataaca cgttttgact agtttagtaa ctgaattgaa       300
     taaaaggtcc tgaattgaac actaaaacac aaaaagaaaa agaaaatcta ctacttttat       360
     tttcatttga attactagta taagttgtta gtgaattttt gtaaatattt tatttttatt       420
     ctatctttga tttgtttgaa ctcgtatcta gtgttagtaa tattaaattt tcttcttaat       480
     aattaacaaa atgaatttcg aatccttact tctgcaatac cgttcgatga acaccgacca       540
     tttgcttgat gacgaattgg agcatgaact cataattcgt ggagtggaat actctagtgg       600
     cgaatcgcgt gacatgaaaa agcgtaaatt gcggcacaag ctgaaagaac aacgcgaaat       660
     taatgatttt acaattaaag taatagattc agaggaaggt tgtaagagag agatgatgca       720
     gatagaagaa aagctggtga agattcgcga taagcttgag catagcaaaa caaagaaatt       780
     cgatatgtcc gcggttcaaa ccaggttaat tcacttgtat taccgattag atagattgaa       840
     agaaaaggtt gatgtgaata gcttagtgga ggagatttta agtctgttga ttccgttccg       900
     gattgaaaat cgtgttgtag aaacgaatgt agttgaagca gtagatcgag atttaatgag       960
     acttagtatg cacgaagaag atgaagatga ctcagagcgc gagggtacag attgcgacga      1020
     ctcagattgg agggagacag attgttcaaa taaaagtacg gaggaagaca cacggaaaaa      1080
     gaaaatgcgt aagaagaagt caactgttag gaaagcaaaa gtgaatgagc caaagttaaa      1140
     gaagattaaa gaaccgaaaa agaaagtaca ttccgaggaa atgttgaaaa agctgttaga      1200
     tcacatagat aattttatgg aaactaaatt taacaatctt aggagagaaa tggacagaca      1260
     atccgctggg tcaatcgcgt cagacgaaaa agactttaac gtagctgact taggaagaca      1320
     tttgaaaggt aagaaaaagg aaaggcatgc agtgaagaaa ggcaagaaag atagcgagac      1380
     ggaagaagat agtagtttgg aggaagactc gggaagctcc cgaggtctca ggcgaaggcc      1440
     tcggtcagta gcagactggc ggatgcgcta tgatgggaag gatgatggga agaagctgaa      1500
     caagtttatt gaagaagtag agtttatggc agaagcggag ggactgagta aacgaatgct      1560
     gttcaacgag gccattcatc tgtttgctgg tgatgccagg acatggtaca tggaaggaaa      1620
     acgtaactgc gattttcgta actggagtga gctgattgca gaattgaaac ttgagtttca      1680
     gcctccggac atggacttcc attatgagca acaggctgca caacgcagac aaaaacgctc      1740
     ggagaagttt caggattatt acaacgctgt agttgaaatc ttccgctaca tggctgtccc      1800
     accgtcggaa gagaggaaat tcgacatcat cttcagaaat cttcggtcgg attacaagaa      1860
     cgtgctggtt gtcaaaggag ttcggacctt gaaggccctt agacaatggg gcaggaagct      1920
     ggattcagtc aacatgtgga tgtatagagg cagggaccag gaatcgacgc agaaacctgc      1980
     tgctcaagtg cacgaagttt cagctaaatc gttccagtct cgaaaccagt ctgggggtaa      2040
     accctggagg ccatcaccac agaccagaga gccgaatcag tcgaattgga aacgtcctca      2100
     ggataaacct gatacttccg gaccaaagca accgtcagtt cgaaaagagg gagaatatag      2160
     ggaagatcag ccagactcta gtagaggtgc attagagaag cgagtcgcag gttacaaggt      2220
     tccagatagg acaacatgct tcaattgtag aggaaagttt cactactatg cagtatgttt      2280
     ggcgccgaag gaagtttttt gtaccgtttg cggttttcct aatttcagga gggataattg      2340
     cccattttgt gcaaaaaacg cgaagggttc ggcgtaggag gtcgtcgagt cccgcttaga      2400
     aaacctccaa cagtattcgt ttcagattgt tcggatgtca gcgaattgct cgtggctata      2460
     gaaggagaca atcgaccatt tgctggaata aatgttttgg gtttacggtt gataggtttg      2520
     ttggacagtg gagcacaggt atcaatccta ggaacaggta gcgagaattt gattaggaag      2580
     ctgaagttga agctgttcaa cacgacgacg aaggttacga cagcgggagg aaatcggttg      2640
     gaagtgaaag gttacgtgaa ccttccagta acttttgaag gcgaaacgcg gattctcact      2700
     actctggtag ctccttcaat gaagaggcgg ctcattctgg gaatgaactt ctggaagttg      2760
     ttcaatatac aacctacagt tcagaattcc ttagatgacc aagaaattgc cgaagccgaa      2820
     cgagagcaaa tagaagaaga ttgcaggttg tctccaaagc agaatgatcg actggaagag      2880
     gtcaagaaac agtttaaagc gtttgtagaa ggagggccgt tggagactac atcattaatt      2940
     agccataaaa ttgaatttga ggaaaatttt caaaatgcgt ctccagtacg attgaaccca      3000
     tacccttggt ccccagaggt tcaacgaaac gttaacgagg aattggacaa gtggatagca      3060
     tctggagtgg tagaacgatc tagcagcgat tgggcgttat tgatcgtgcc ggtgatgaaa      3120
     aagaccgaag gggaagatgg acagcagaag atcaaagtac gaatgtgcct cgatgcaaga      3180
     aaattgaacg agaggacccg acgcgatgca tacccactac cgcaccagga tagaatcttg      3240
     ggcagattgg gctcatcgaa gtacttgtca actatagatt tgtccaaagc tttttggcaa      3300
     attccgttgg acaaggactc caggaagtat actgctttca gggtttttgg gcgtggactt      3360
     ttccaattta cccggctacc tttcggactg gttaacagcc ctgcgacgtt atcgaggttg      3420
     atggaccagg ttttggggta cggagaacta gaacccaatg tttttgtata cctggatgac      3480
     attgtcattg ccagtaactc atttgaagaa catttgcgga ctctggaaga ggtagcaagg      3540
     cgactaaatg cggcaaattt gtcgattaac ttggataaat ccaaattttg cgttgcagaa      3600
     ttgccctacc tcggattcat tctctcaaaa gaaggagttc gacccaatcc agagaaagta      3660
     gaagcgatcg tcaactttga gagaccatct tcggtacgat cactcaggag gtttttgggg      3720
     atggtcaatt attatcgcag atttattgac tgcttcagcg atttgaccac tccactgact      3780
     gatctcttga agggtaagcc gaagatcgtg acctggaatg ctgaggcaga agcagcattt      3840
     aacgttctga aggaaaaact aataactgca ccggttctgg ctaacccccg attcgatttg      3900
     ccgttcaaaa tccagaccga cgccagcgat ttggcgattg ctggcattct gacacaagaa      3960
     atcgaagggg cggaacacgt tgttgcatac tactcacgaa agctcaccac gccacagagg      4020
     gcttggaaag ctgcagaaaa agaaggtctg gcagcgttag aatcgattga acggttccga      4080
     ccttacgtgg aaggaaccag attcaccctc atcacagatt cttcggctct ttcgttcatt      4140
     atgaacacga aatggaagcc gtcatcaaag ttgagccgtt ggagtattct tcttcaacag      4200
     tatgatatgg tggttcaaca ccgaaagggc tcagaaaata ttgttgccga tgcgctgtcc      4260
     agatccgtag aagtgctgga cattacccag gacaatggat ggtatgcgaa gcagtttcga      4320
     aaagtcgaac aggatccgca gagtttcgca gacttcaaga tcgaagataa gaagctgttc      4380
     aaattcgtat ctgcagcgtc agatgtcctt gactatcgat tcgaatggaa gctatgctta      4440
     ccagagggat tgagagagtc ggtacttcga caggaacacg atgacgttct gcatcctgga      4500
     tttgaaaaga ctctgcatcg agtcaaaacc aggtactatt ggccaaaaat ggcaatagat      4560
     acaaaacgac atgtacaagc gtgtgttacg tgtaagcagt gcaaacccgg taatgctgct      4620
     tcagcaccgg aaatgggaaa gcaaaaactc acggataggc cattccagat tctagcattg      4680
     gattttatcc agagccttcc tcgaagtaaa aacggaaact gccatttgtt agtcctaatg      4740
     gacctttttt ctaaatgggt tattctggtt cctgtgaaga ggattgaggc caaggcagtt      4800
     tgtaagatcg tggaagacat ctggattcgg cgatatggaa caccggaagt ggtcattagt      4860
     gataatgcca cgacctttac cgggaaagag ttccaatatc tgttggcaga gagagggatc      4920
     cgtcactggc ctaatgcgag gcaccacagc caagctaatc cggtggagcg ggccaataga      4980
     accattaacg cgtgtctgcg gacctatatg caaaccgatc aacggatttg ggataccagg      5040
     gtcggagaca tcgaagagat gatgaacacg actgtccacg cttctaccgg atttacgcct      5100
     tacaggatcc tctatggaca tgagaaggtt gtaaaggggg aagaacatag gcgtgagaga      5160
     gatgaaggtg aactgtcggt agaggctaga gaagaatacc ggaaggaagt aggaggaaaa      5220
     ttattagaaa aagtcaagga gaatctgcag aaaactgatg aaaagagtag aaaggtttat      5280
     aacttacggc ataagaaatt tgctccagct taccgagttg gccagaaggt gttcaagcgt      5340
     aacttccggc agtcgtcagc tgtagagcat tataatgcca aatatgggcc tctgtatacc      5400
     ccttgcatca ttatcgcgaa gcggggtagt agctcgtatg aggtagcgga cgaagcaggc      5460
     cggagtctcg gagtattctc cgccaacgat ctttgacccg gtaatgaata gtgcgcaagc      5520
     ctcccctaaa ataaataatt atgtatgagt tgcatacacc attctaacta ctagaaggac      5580
     gttagttacg tagtagcgaa tagaaaaatt gtagttttag ctgattgttg gtcatcgtcg      5640
     ttcatcctag gtcttcgttg agccatatca tcagcagtat ttcgtcctgg gtcacgatcc      5700
     agcttgtgtt catcaataag cgtagaactt agaaccaaat gaacattgaa atccagttgt      5760
     tagacgtcgt ttttcaatta tcctttgtgt tagtccaaat ccataggtca tcgtagtacc      5820
     aaagtgaaga gtcatgaatc gtcgtctgag tcttgttcac cgtgttaagt tattgaagtg      5880
     taataagtgc acttagttgt ccccgtcgtc gtgatcgtca gtatcatcgt cgtcgtcggt      5940
     aatagtttta tggcatagtc catcgtagtc gttgtcgttc tcagcaagca cggtttgtgt      6000
     cttcgctgat aaattgtcgt gtgtctgtaa aagagaaaga gagaaggttt atcaaaatgt      6060
     gtcgtatatc aatccggatt gaaacattgt ggtcttttgt tagtgcgcaa tgacaaaaga      6120
     tatgcatcta gaaatagaat tgaatagaat atctaattat agggtcaaga ataagaaaca      6180
     ttactctact gtatataccg tgtgtagagc tacgtacctt tttagcatga aacaactatc      6240
     caatcgaacg aaatttgttt tcagaatcgt tcctacatca ccaggtggcc aactggtgga      6300
     atgaagctgg aaataaagaa gttcaatcag cctaaagaat agaatcatga aacaagttca      6360
     cttatcgcat tgaaattaga tccaacgtag tctatctgca ttcaactctg ctttgcatct      6420
     caccctttaa tcgcatagat acgcacgcga gcacacacgg tagtagacta aatcgtattc      6480
     ggcattcgtt gatcctcata cccgaacgtg atgaggcagt aacggaatga gtgtagtagg      6540
     aactcaccat agatgttcat cttggtgttt atcgacgcac ataggcacag ttagggacca      6600
     cacgtgatcg attatagcaa attttatttg aaatttcgct cttagttaca caaggtttta      6660
     acgtgttatg tagtcgtcgt aaacttatag atattttaac tactacgtgt cgtattttaa      6720
     ttaactatgt tttgtcgtat attttggtaa ttgtcttgaa gtttttgaaa ttgattctat      6780
     tttgttttgt gtaggaaaat aaatgtttca atgtatttaa acatttattt ttccgaggtg      6840
     gggggatag                                                              6849
//
ID   Gypsy-380_AA-LTR repbase;    DNA;    INV; 1307 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-380_;
KW   Gypsy-380_AA-I; Gypsy-380_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1307
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1307
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 135-135 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1307 BP; 368 A; 307 C; 282 G; 350 T; 0 other;
     tgtaaccgag tgttacagga tttttagaat tttaatgtgt gctttatatg ttttgatact        60
     gttacatttc tttggttagt aggtgttggg ttagtagggt tatttaaatg taaattgata       120
     aaaattgtat gttgattagt agggttagtc atttcaaatt caaaaattgt taaagcatta       180
     caaagtagag tgggtacaag tgggagacat attgcataac tgagtgggta caacaacata       240
     catattcggc gggcgtagaa tatcatacaa aaggggtggt aacaatgcac gtctcataat       300
     aggagagatt gtaaggattg aggcgcaaaa ttaattcgcc atctctcact taagttctgg       360
     cgttcgtgtg cttcggatcg taaaattgaa aattaaaagt gtccttacgt tgtaagtcaa       420
     gtgagtggtg aagtgaaacg ggtgatatta agtgttcaat caggtaggac tgcactcctc       480
     aatgcctgta taactttctc cctaacacta cttacgctag actagaatat gactagtaaa       540
     gcaattttct aaaacccatc cccgttgccc tcacaggacc ttttgtggta ccttaaggta       600
     cttcgccatt ttgtattcca acgaaagttg gggaagcaca cgattcggca tagtggtcct       660
     tagttggcca ctacgcctaa ccgtaaaaga ttaccaccgc tctggtcttg cgaggccata       720
     atcaccaagg agcgattcct cgggcccaaa ggtgctctaa ccgtaaagga ggacctctct       780
     cggcagagtc aatccggcct tgtcctgggc tctgtcgatg cttgccaaag agagaagacg       840
     ccagagagac cagtagatcg caccatttca tcaagtcgat ctactcaccg atccaccagt       900
     caattttccg accaccacca ccaccatcac cctgctggga aatccgccgg aggtccagtc       960
     agccggcccg cagagacatc gtcggcgagc gctcgtccat cggcatcgag acatcagcat      1020
     caccaacagt accggtacgt gtcccaaaac cttctacacc cactctacac ccacaattgc      1080
     aataaatttt caataaattc aacccacacc ccatttacaa tagaatttca ataaatgcca      1140
     ttagtttcct caaattacac ctttttaaaa tcccataacc caagtaaggt gacagtatct      1200
     gcacgttggt cgtgaagccc ctccgattgc ccggtagtaa gccgaccttg agacccagct      1260
     cgaggggtcc cttgctactg agagtttccc gcgagctttg ctagggt                    1307
//
ID   Gypsy-381_AA-I repbase;    DNA;    INV; 6784 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-381_;
KW   Gypsy-381_AA-I; Gypsy-381_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6784
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6784
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6784 BP; 2150 A; 1566 C; 1565 G; 1503 T; 0 other;
     ctggcgccca actaaaatcc ccacacacaa atagcattac cacttattta tgcggctttc        60
     gaatttggat agtcaggctc acacattatt gagcttatct ggttggtttg gatttatatt       120
     attgcaagtt cgtcaatatg gacttaacac acctaagcaa cgaggaaata gactatgaat       180
     tagctcttcg attcgtagta aacctcggac cttcaacgca taggaacaag gttcttaagc       240
     tcagagagct aatgactcag gatgaaggaa atcaggataa tgtgtatcga agctcagagc       300
     acgtaatgcc ttcgatctca aacattgaaa cttgtcaagt tagaatttcg gaactcaaga       360
     cgttgatcga tgaagcgatc caaataaaag atcccttcgc catcactcaa ttacgatctc       420
     gtcttctgca ttatgaacac aggttggaaa gcattcaacc tctcccgcca ttcgctagta       480
     caaagcaaac tttatgttct cttgtcaaag tgttaaagaa cgaggtggag aacgcattgg       540
     cgcaaatcgg aaagcgcagt gatagaagtg atagtgcagt gacaaacatc aatccatcaa       600
     gcgggtcaaa tggagagcaa ggcagcaaaa aacgaaacca gacattcgaa gaagacacca       660
     gtgaagcata cgctttatta ggagctagta gcaataatca acagctacag actagcaacc       720
     tattatcctc agccacttca catgcagagg tcatcgaaag gcagagcatg tggcagtccg       780
     aacaacatcc gatgaacaat gccagcagaa gatcaacaga aggagctcca cagcgagtga       840
     acggagcagg cggggacatc agcaatcagg gtcttcaaga cagctgcatc ggacatgatc       900
     acgatccgca gatgtcagca acgagttctc cgctagtagc tggtcgtgga agagggatct       960
     caataagaaa tcagcaacag ctgcgatcta acaccggcgg aagaggaaga gcaaatcaca      1020
     tacccacatc actagacagc aggaatggcg gaaacaacaa cgatgatata accttcagaa      1080
     acatcatcgt caacaatgca agtctttatg cagatttggt ggaacgttta gcgcgccgag      1140
     atcgttacac tggagcacca tcaacagaac gatcagagga tcgtcgaatg atgaaggcag      1200
     ttcacaactg gcccttcaaa tttagaggag aaaaggatac cacttcgcta aacgttttct      1260
     tggaccgagt ggaaactttc gccaaatcgg aagggatgag tgacgatacg ttactttctt      1320
     ctatcaagca cctcctgcag gacgatgcat tggattggta tgcccgtgca atgtctcaac      1380
     gattgctatt ttcatggcat gccttcaagc aagaaatcag gcgagagttc ctacccagtg      1440
     gatacgctca gatactacga ttagaggcca gcttccgttt ccaggggcag agtgagacat      1500
     tcgccaagta ctaccgcgat attgcagcgc tcttccgctt catatcacct ccaatgacgg      1560
     aagaggaaaa gtttttcatc gttaagaaaa atatgaatgc agattacgct gcgatagtta      1620
     cggctgcacg tccggcagat ttgcgggaaa tggtcgaggt gtgtacgagc tacgacgaaa      1680
     ccaggatgct gctgaaccgc caacgacgaa ttccgctgcc gcacaatgcc ctactggaac      1740
     caaacttcgc cactccagtg agttcaacaa aaccattcaa tcaaccacag catctgagat      1800
     atccgaggat caatgcagtt gaatcgaccg acaaaggtga ttatcagcac acacatcact      1860
     tcacggctct tccagaaacc gaagcagcaa caaacgacga agaagtggaa tggcatatca      1920
     agatggatca actgctgcag caggtgaatg ccttaaaggg tcagtttgac aggaaaattt      1980
     ctaggccacc aggtggtcca atacacgacc aaattgctcg tactacgtcg caacaatcag      2040
     cattaacgcg tgcacctctc cgtgcgcaat tggcacatca acaacaacga ttgcaaacag      2100
     ggcagtttca ggaagggcaa tcccagctaa atcactcctc acagtatcct caattgtcgc      2160
     aacaacaatc agctagacca gcgccaatac agcaatcgtg ggagcaacag caatcgtggc      2220
     agcatcagca acagcaaccc tggcaacagc ggccaatgcc ggatcagtgt tatccagccc      2280
     gcagtggtgc tcagcaaaca ggagaaaaca gtagtcgttc ggtcatgaca tgttggaact      2340
     gtgacgaaga aggacatcgc tttatggatt gcccaaagcc acaagccgtc ctgttttgtt      2400
     accgatgtgg gaggaaaggc tactctctta gaagctgctt cacctgccgt acagatgcgg      2460
     gaaaccagca ggcggagaac cagcattaga gggtccagat tcttcgctcc aatcaacaga      2520
     accctcagaa gagcaagaag tacaacacct cgatactatc attatcaacc ccggacagga      2580
     caacagacca catgctatcg ttagtatctt ggggcgtgag ctgactgcat tattagacag      2640
     cggggccaac tgctccctac tgggtggaaa ccacacaaag atggttgaag aattaggatt      2700
     acgcaaggaa aaggtgaaag gaggtatcaa aacagctgac ggcacgcgac acgtaatctc      2760
     taactacgtt aaactcccaa tagtctacaa taaaaggtac gaaactctac aaaccttatt      2820
     agttccgtcc attccagatt gcgttatttt tggcatggat ttttggaaca aatttggagt      2880
     caaaccgatc tgctgtagca tgcaggccac gacgaccgat gaagatgaag agaatgcaga      2940
     agagccaatg aagaatctca caccagaaga gcaacgattg ttgaacgacg tcatagcacg      3000
     atttcctaaa gctagcaatg gaacattggg tagaacaaat ctttacgaac atcggatcga      3060
     cgttgggaac gcgataccgc gaaaacagaa gtattatcca atgtcacaat acgtattgca      3120
     ggaggtcaac agagagattg acagaatggt ttccctggac gtaatcgaag aggctttttt      3180
     ctcgccatgg aacaatccat tggtggcggt gaagaaaaag acaggacaat accgcgtttg      3240
     tctagacgcg cgacatttga actccgtgat ggtcaacgag ggttatccaa ttccacaaat      3300
     ctcagcaatc attggaaacc ttggtggttg tgcttacatt tcgacgatag acctgaaaga      3360
     tgcgttttgg cagctacccc tccatccggc gtcgagacca ctaactgctt ttaccgtgcc      3420
     atctaggggg cacttccaat ttaaggtcgt tccgtttgga ttatgcacgg ccagccaagc      3480
     actcgccaga gtcatgacac acctatttgc ggacatggaa ccatacgtat ttcattatct      3540
     tgacgacatc gtaatatgct caaggacttt tgatgagcac atcagagtgt tgaatgaggt      3600
     tgcgcgcaga cttcgagctg cgaaccttac gatctcgaca gaaaagtcaa agttctgcag      3660
     acaagagatc aagtatctag gatatgtgct gaacgaaaaa ggatggcaag ttgatgacga      3720
     caaaatcgag tgtatcgtga aatttccgat tccaaagagc agaaaggatg tacaacgatt      3780
     catagggcta tgtaattggt accgtcggtt cattgcagat ttcgctgaaa tcgcagcacc      3840
     actgacagag ctaacgaaga ccaaaaccaa attccgttgg tccagtctag cggaggaggc      3900
     gttcatgaaa ttaaaatcga tgttagtttc ggcaccggtg ctcatcatgc ctgattatgc      3960
     gaaaccattc agtattgcat gtgacgctag cgatgtggct attggagccg tactcaccca      4020
     ggaagtagat ggcgaggagc atccggtttg ttacttctct cagaagttat cgtcagcgca      4080
     gaggaaatac tcggtcacgg aaagggaatg cctagcggta ataagagcaa tcgagaagtt      4140
     tcgtggttat atcgaaggag ttaagttcac agtttattgt gaccacgcag ctttaagtta      4200
     cctgaaatcg cttaaaaacc ccactgcgtt gttgagtaga tggctgcttc gactaaacgc      4260
     atttgatttt gagatcaagt atcgaaaagg atcaatcaat gtagttccgg atgctttgtc      4320
     aaggatcgtc aatgtgacaa cattgaatac gaatgatcca tggtacaagg aaatgataga      4380
     acgggtgagc aagaagccag actcctttcc ggaatttcgg atagtcaata acgaacttta      4440
     caagaactgt cgttccacgg acgagacagg agcactcaca catcactgga gaaaagcagt      4500
     accagaagaa cagcgtaaaa tcatcatgca acgcttccat gatgcaccag cggcggctca      4560
     tctgggaatc tacaaaacgc tacagaaaat caaggccaac ttctactggc cgaaaatgca      4620
     agaggatatc catcaatacg tgcgaaattg tgacatttgc aaagccagca aggcaccaca      4680
     ctcgtctttg atgccacaga tgggtgccgg aaaaccagcg aaacttccat gggaattaat      4740
     ctcaattgat tttgtgggtc ctttcactcg atcaaaacaa ggacacacgg tgatgctagt      4800
     cattgtagat tgggtaacca agtatgtggt agtccatgcg atgcgtgctg cagatgcaaa      4860
     aaacatggta gagtttctgg agaatgaggt tttcctaaaa ttctcttacc cccgaatcat      4920
     cttatccgat aatgggaaac aattccagtc gctagctttt cgctcaatgc tagctcgcca      4980
     caacataaaa cacatgaaaa cggcctttta ttgcccaatg gttaacaatg ccgagcgagt      5040
     gaacagagtt ctggttacgt gtatacgatc gctcatcgag gaggaccatc gaaactggga      5100
     tgaaaatcta ccctccatta cagcagcaat caacagcgca aaacacgaag tgacaggagt      5160
     gagccctcat tttgccaatt tcggcagaga actggtgttg tacacggatc tgtatcagct      5220
     gcaagacatg aacaccgaag aagaagcaac caaggtccag aatcgtcgat tagaaggaat      5280
     cagaagaatt caggaattca tagcccatcg catcagagtt aaccacaaca aatccaagca      5340
     acggtatgat ctacgaaagc gtacagtcat ctgcgatgaa ggagacgtag tttggcgacg      5400
     tactttcgac ctctcatcga aagtgaacca cgtaaaccag aagctcaatc ccaagtttat      5460
     tcccgcagtc gtaagaaaaa agctaggtgc aaacctatac gaactagagg atgttctgac      5520
     gggcaaaaaa ggtcaatacc acgcgaagga tataaagacg gattgataat caagctatgt      5580
     cagcagatga actctgctaa ccacgagcat tgcgctcagt aaaatccgtc atcatacggt      5640
     gaaaatgact acagtcaggt gtgatgagca acaactatga tagactacct ctccacctcg      5700
     accaatccag ctatgaaggc agtctcagct tgccgaccac cgatcatcgg cgggaaagag      5760
     cccgaactct gtcagactgg aaacgggctg cagggaactc ttcagcacgg cagcacggct      5820
     cctagatagg aggagcagaa gccttgagaa ggccggatcc actgaggttg acacggacgg      5880
     ccactatcta gcacagggga gcaacgtcat gtccagtgct taaataaact ccacacaacg      5940
     acgacgacaa gtcaccgcaa gagcaataaa cataaagcta tgtaaacaag aatcttgtga      6000
     accaactgtg caaaacccac taagtggcag taccgttagc cgatcgggac aaatcgtgca      6060
     gacgagttcg gtgaccaaca acaactacta agtctacccc ccaacttcga ccatatcaca      6120
     ccggctatgg gcaacatcag ccacaattag cgccccagcg aaaacacgta aaacggcagc      6180
     aagaatcaaa agcctggaat ggtgtcaaaa ctcgaaagag tagtccagag atagcaaact      6240
     cgaaacatag atccatccat atcagttgtc tttagagggt catcatgaaa tctccacttg      6300
     aagtaacgtg accgggggcg cggtaaaact ccttacatgg gctcatgacg attctagggg      6360
     aggaaatgcc ctttttctct aggccagacg acacgatata cccaaccaaa actatccaat      6420
     taatatagtt atatgtttta tgtttaatcc aatctagttt aacaaaacaa ctgaatagga      6480
     ttaagctgaa tgtctgccaa ggcagcagaa atgtcatgag ataaggaatt aagaactcag      6540
     tcagagacaa tttgccaaaa cacagttggt acactatcgt aatttgccag aaacagctgg      6600
     tacatttggc ttgaggatta taaagtgttt gtgaggttag ctgtaagtaa acaagaacta      6660
     gagctcgact ctagggtctc tgatacgatc cgtctctgac cgacttcttg aaggaagttg      6720
     aagagttttt catgaggcta ctattcttcg cctcatgaaa aactctgccg cattggtaat      6780
     gttg                                                                   6784
//
ID   Gypsy-381_AA-LTR repbase;    DNA;    INV; 1791 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-381_;
KW   Gypsy-381_AA-I; Gypsy-381_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1791
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1791
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 136-136 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1791 BP; 519 A; 407 C; 450 G; 414 T; 1 other;
     tgtaacgttt agaattttgt tctgtaatat ggccaactca aaagcagctt tagccttaag        60
     atagtgagaa caaaaatcaa agcagaataa atgctccgca agtagcaagc tgagcacccc       120
     tatcaaatgc cttttaacgc cactgcccat aagccaccag cattaatgca aagcgtaaac       180
     catcgtacca ccgtcaccta caagcaacat acacgagagg gatcccaata ctcatcccgc       240
     tagtgatgat cacgacatca tcgcgaccag tgtaggtaga taggcatcga tcggagcaaa       300
     gataaccagc gcacacatag atcgcgcaag atcctctcaa ggttctctcg ttagatggag       360
     ggccgcgagt tacaatgagg ccatgtggcc acacaaatac gaactagcag cggagagacg       420
     atcagcatgg tcaagcaaac ttcgctctaa cttcgacagt ccccacagat cgctkgatcg       480
     agtcagccgc gaataaattc gtcagtgaag cctcaccgcg cgtaattcat caagtggact       540
     gcggtcagaa ttgcaagcga gaacaaaaaa aaaagggaag aagcgactgt tactaaatcc       600
     cgtagttggt tggcgcttct ggaccagctg caatagtcag tgtcgaacat ttggtctcgg       660
     taaatcattt gccttaaaag atggctacca gaggtgctca ttgttcttgt ttctagaacc       720
     attacagccg gaaattggtc gaccataggc gaaacgaagc tgacgaggca tcgcttagta       780
     gccggaatag atcgatagac ggtgagttac actttctata atcatgacag tgattccatg       840
     ctctaactgc ggctataata ggtcttaaac gaggtgcata ggcatgcaac cacttgttcg       900
     tcggcccagg ggtggcaaca tctaagggac tgcggaggtg agtcacatta tgcctagagc       960
     tagacaatag gaagataaaa acgcacattt tatgccaaca gacgagccag ttcgtgccct      1020
     aaagctcagt gaggacatta ctttgcatct agcacccagc tgcatgtgga ttgagcgata      1080
     cggaggaaga gcgacgcacg cacacagcaa aacccctgaa tagggtgagt ggatacatgc      1140
     tgttcgaagc atgcagcaac taacttgtcg cacgacaggg tttttttttg ttacagtgca      1200
     taatcgtcgc gcaagacatt gaagatcccg gcagcagtgt gcaaggtgca acggcggccc      1260
     aacgattact tcgatcacag tggctgtgag gactgagacg gagcggtcgg tgaagttact      1320
     cccgacgagg tgattgcctt cagcatcggt tacgacatcg aggacttgct gttgcggaga      1380
     aattccacgg ctccacggcg tggacggtca gggagtgaac aacgttactc cagtggcggg      1440
     ttcatcttca atcccagggc agcctgccca atgccagacc gaactgcaaa gtgtatggca      1500
     tggcgacatg gtgcatgact agaggcgaca ggcatgaatt ccagctcgcg atcaatgtat      1560
     tgtgagtaaa cccaacgtta gatgtaagcc attgatagtg aaatagttca tgttgcgata      1620
     gagttaggag attaagaaac tcatgaggga tcaatagctt gtacatgaga gtatgggtca      1680
     ttaatacaga ttgttcaaaa tgatttagtt gttttctgtt ttgttggtgc acaagcctca      1740
     gtattgcgtt tcaattttgt cccttttgga gctatcggga aactcgtaac a               1791
//
ID   Gypsy-382_AA-I repbase;    DNA;    INV; 9001 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-382_;
KW   Gypsy-382_AA-I; Gypsy-382_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9001
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9001
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (16-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           4050..5405
FT                 /product="Gypsy-382_AA-I_1p"
FT                 /translation="MTKHFKSFFIIIKNLNRFLCTHCFYFRKTNGPTKQDY
FT                 AKALRVEKQRNAYLIAKLKSTRNKNQRPAEWFEEPSDAGDSYSADFIRRSS
FT                 TMRESFHPNGNDVSIFTSMSFASLNISECKPIDGEDDIDKKSFEHWKDLLE
FT                 ASMQFAGVMDEYTKMSIFKIKAGSKLMETLDGTTSRDDDPDVSILPYSNVM
FT                 CRLKRYFNSRDYVLLQRQKLKSMSQKEDESDLKYVRRVAAVAKLCDYSEDQ
FT                 MMENIADVVQSHALNQKVREAGRKIMRKGGKLTELLDKIRGYEIEHLNEQT
FT                 FLKNHQNTNSTYKQVAAVEYEQRMHGGSFRPQHSFVSKAVSRPYTVAYNQP
FT                 RSVENFRGKGTMRRGMNRSVGAGQKPCWRCTGTFHRPYECHAINKVCRKCQ
FT                 RVGHIERACNQMLKAPSRKRHVSNDREISPPPKMRKIAAITETDQEIIEDD
FT                 KDSVSVH"
FT   CDS           5453..8743
FT                 /product="Gypsy-382_AA-I_2p"
FT                 /translation="IRINICIGVVYITCVIITQNRIEINNFDFQKFPNTDV
FT                 CIDQPINQSTSGSTGTVSLVDSNEQVELQVRSTVRPLSSCTHSGNIVGFIA
FT                 GLSVEFLIDSGAEVNTVSDLVFEELMNSDRTVYELKRGTDKSLKAYASPGE
FT                 ISVVASFVAELFVSNDRPRYLEKFYVISNARPLLGRNTALRYSVLQLGFDV
FT                 PIQYSVENMQKAYPCEIFALSDNGEFPKFNVPPVSLAYDKSIPSTRNVFTN
FT                 IPPAFKEETERRLTGLLSSGIIERVTDKMDKSFCSSLLVVPKGKDDIRLVV
FT                 DLRGPNKCIVRSPFKMPTLDSILPELHKAAFFSTIDLSSAFFHIELHENSR
FT                 HLTNFFAGNATYRFKRLPFGLCNAPDIFQEIFQTVVLADCPGTVNYLDDVL
FT                 VHGSTLEEHNVNLERVLSRLRSHNVLLNNEKCNFAKESVKFIGFRFARDGI
FT                 SVEEDKMKAVREFRTPETLLEVKSFLGLINFSERFIFKRADKTKHLRMLAK
FT                 SNFFYWTQSEEDEFVFLKNEALQSIKKLGYFNHEDETELYVDASPIGLGAV
FT                 LVQYSNDGLPRIIACASKALTATEQKYPHTQKEALAMVWGVERFSYYLMSK
FT                 NFTIRTDSEANQFIFGSINRTSKRSMTRAESWALRLLPYRFSVKRVTGQSN
FT                 IADVLSRLISKTQVDEAFDEDNDRNVIYALDAETMDITWTDIELASENDNE
FT                 LEEVRSAIGSNNWPWHLRRYESEASELRVLHPMIFKGDKIVLPKVLRNKAL
FT                 EIAHQGHIGCGATKKIMREYFWWPNMSKEAVEFVKKCETCLLVSRRNPPIP
FT                 LSSRQLPNGPWEILQIDFLTIPGCGSGHFLVVVDTYSRYLHTIEMKHTDAR
FT                 TTNAALCKIFSTWGMPLIMQSDNGPPFQGNEFVEYWEAKGVRVRKSIPLSP
FT                 QSNGSVERQNQGIIKAVSGAIEDGKNWRDALEAYTHLHNTLKHHSRLGVTP
FT                 FELMVGWKYRGTFPCLWKPDPAKEVDREEVREYDAVAKLNSKKYADCHRGA
FT                 KDTDIVVGDKVVVANYQRNKIDPTFSKERYTVIARQGAKVVIRNDFGVQMA
FT                 RNVQDIKRDLTIPQNQENGVEDDFVDMHGIQTQQTSPLVK"
XX
SQ   Sequence 9001 BP; 3269 A; 1582 C; 1853 G; 2297 T; 0 other;
     atggcgcaaa ggctcccagg gggcaaagaa aaaagtaagt gaaattatta tttaataaag        60
     tgctcatttc gtctttctcg cttccaccct aaaaaaaaaa aaaaattgat gtcgcgaacg       120
     tgattttttt tccttgaagc ttcaattcaa gctccattga aactccgaat gaaaattgag       180
     ccggaataat tactgatttg tgtacttgtg cttagcagcg ccgccttgaa cacaaaattt       240
     taaaatttgc ttggaaaaga acaattatct tggaaaatag taggtataat taatgtgcgg       300
     tgtctgtaat aaattctcat cgattcgaat ggacattccc gaaaacaggt tagaaaaaat       360
     tttcacttga ccgtcgtcgc catcacaatc cgagtagcgg ttgccaagca accgttagtt       420
     ctacagctct acgtgaatac agttactccg gcttcaaatt ggcagaaaga gaatttctct       480
     ctctttctct cactcaacaa tgatactgta ctgatcatca aaagtaaata cacaaacaca       540
     ctaaacgaca gccatttgct tgagcatcga agccatgttt tacttacttc aagcggaatc       600
     caaccatgtt ttgtagaatg gagtcaatat actttttcga agtcccttat aatcatccaa       660
     gtattttgca cacaggtttt taccactaaa taccaattac gattcgatta gttgtttcat       720
     gatcgcattg aatggcatca attatataaa caagcaaaca gaggactgat ggttggcgaa       780
     tcagtgttgt caaaaaataa ttttcaacaa aacctggtgt gctttatttc ttccccctct       840
     tttcaagatt ttgtcaaacc aatccacact cttggcaaca ccgggagaaa gcacacaaat       900
     aaaaaaaaaa actagtgagc gaagttgcct acacacacat gtttcaggaa ggctctctca       960
     gccttctttt ttcatctcaa gcacaaatgg aaaacggttc ccgtatgaca acgtggtagc      1020
     ggaaaagaga agggtgattg aacgtcagat gatctagtac acaattgtat catcatcatc      1080
     atcatcatta tttacgttga tatcggtatg cggccctgtt ggccatgcat gcttgtgttc      1140
     tagttttcat tgatgacgaa gtcccgtgca gtgaaattaa gaatgtgaaa ccgttatgaa      1200
     gaacccatga aagggacaga ttttctaatt tctcgcttaa cacttgaaag caacccaaac      1260
     gacgatcata aaactaattt tcgaagtttg taaaatttat aagttaatta cccattacgt      1320
     tttttacaac ataacacgtt ttcatacaac ttttattgaa attatgtctg tcctacaatg      1380
     tcaatatata aaagaaaaac tggaagttaa actgtcacgc aaaataaaaa ttacgtcaat      1440
     gtgtaaatgt gtgaaatgat aatgccggta taaatgtatg agtttttaca aattgttttt      1500
     tttttcttga aaaaatcggt atccgaccct tgttgacatc ggtatccgac ccttgccggc      1560
     cacgcatggc atgatagttt cttattggat tttagcagtc gaatgaatta tatgataatc      1620
     gcgattatat tgacaatgaa tgggacattt ttttaatttc ttgctcaaca tttgaaaagc      1680
     aaccaaaacg tcaatcgtaa aaatcgaagt tttgaaaatt tgatatgtga ggaatcataa      1740
     caaaaaaata aatgaaataa aaaataaagt cacctgagag gttaagcaaa aaaaaaaaaa      1800
     caaatataat taagtcgcct gggagggtaa tctgaaatga tctctgagtc tcattagagg      1860
     gtaagcagta ctttaaaaag tagcaacgaa agaaattgta aaccccctaa gagagtaatt      1920
     tggatatatc tatgagtccc ctgcaatggt gtgcaataaa acgtattaaa tcaaaaataa      1980
     gctagagttc cctgtgagga taatataaaa agcaaagcaa tttccctgag agtgtaataa      2040
     aaaaaaaaaa agttcctgca agtatgattt taaaatttgc ccctgagagg gtatactaaa      2100
     taaaatcttt gagttatttg tgaggtagca taaaaaaaaa aatataattt tgaaataaaa      2160
     aatttgagat ttcttggtag attcccttga gagagtaagc tagaatgaat agtaaagaaa      2220
     agggtagcta atacaaagtg agccgctcgt aaaaagtaag gattcaataa aaaaaagtcc      2280
     cctgagaggg taagcaaaaa aaaaaatagg tcttctgaga aagtaagcaa ataaaaaagt      2340
     ccaatgagag gctaagttag agtaaaaaaa ctgttccccg aaaaaataaa ttaaatagtt      2400
     ctctgagaga ataaaggagt cccctgcgat ggtaagcgaa taaaagagcc cctgaaagga      2460
     taagtaaaat aaaaaagtcc cctgtgaggg caagcaaaga aaaaaaaaag ataaaatgaa      2520
     aagtcccctg atggtattat caaaaaaaaa aaaaaaagtt taaaggaccc tgtgggtaat      2580
     caaaaataat aataattaaa aagcccctta gagggtaagt aaaagagtcc cctgagaggg      2640
     taagtaaaaa aaaaaaaaaa acaaagtctc ctgtgagggt cagcaaacta aaaattaaaa      2700
     aaaaatctcc tgacataatt tttaaaaaat cccctgagag ggttagaaaa aaaaaaagtc      2760
     ccctgagatg gttagcaaaa gaaaaaagtc ccctgagagg gtaagcaaaa aaaaaaaagt      2820
     cccctgtgag ggtaaacaaa aaaaaaaatt aataaaaata aaaagtcccc tgagagggta      2880
     attaaaaaca gagagtcccc tgagagggta agctaaaagt cccctgagag ggtgagcaaa      2940
     atattaaaat gtttccttta aaaataaaaa aaaaataata ataatagtaa tagtaataaa      3000
     aagtcccctg agagggtaag caaaaaaaaa agtccctcga gagggtaagc aaaaaaaaag      3060
     tcccctgtga gggtaaaaaa aaataataaa aataaaaagt cccctgagag ggtagttaaa      3120
     aacagagtcc cctgagaggg taagctaaaa gtcccctgag agggtgagca aaataataaa      3180
     atgtttcctt taaaaaaaat aataataata gtaatagtaa taaaaagtcc cctgagaggg      3240
     taagcaaaag aaaagtcccc tgagagggta agcaaaaaaa aaaaaaaaaa aacaagagag      3300
     tcccccgaga gggtaatctt aaaagtcccc tgagagggta agaaacaaaa taaaataaat      3360
     aaaaaagacc cctgagaggg taagcaaaaa aaaaaaaaaa caaagtcccc tgagaggata      3420
     agcaaaaaaa aaaaaaagaa atactaaagc cccctgagag ggtaagcaaa aaaaaaagca      3480
     aagtcctctg ttaggataag caaaaaaaaa atctatataa ataaaatcaa aagtcccttg      3540
     agagggtaaa aaagagagtc ccctgagagg gtaatttaaa aaaaagttca gggtaagcaa      3600
     aaaataaata aataaataaa acgttaatac taaagttccc tgtgataaca taaaaagcaa      3660
     ttcccctgag agggtaagcc aacataaaaa atcctgcaag tatgattaaa aaataagccc      3720
     ctgagagggt acactaaata aagtctatga gttatatgtg aggaaacgta aaaatattaa      3780
     taaaatgaaa aattgcaagt cccctgagag ggtaagcaaa gaaaaaagtc ccctgtgagg      3840
     gtaatctcaa atgatatcag agttttctga gatggtaagt ataaagtatt atgagtcccc      3900
     tgtgaaggtt tagcaactac agaaatgtgt gagttaattt ggggaaccaa aaaaaaaaaa      3960
     cgatttagaa agcaaatata ttggacatat gcttaaaatt tgtctattaa tataaatgat      4020
     agtaaaacat tcaagagagt tgagcgagaa tgacaaaaca ttttaaatca ttctttataa      4080
     taatcaaaaa tctcaatcgg tttttgtgta cccattgttt ctactttaga aaaacgaacg      4140
     gacctactaa gcaagattac gctaaagcat tgagggtaga aaagcagcgt aatgcttatt      4200
     tgatagctaa actcaagagc actcgtaaca agaatcaaag gcccgctgaa tggttcgaag      4260
     aacctagtga cgcaggtgat agttattctg ctgatttcat tcgccgaagt tccaccatgc      4320
     gagaaagttt ccacccgaat ggcaacgatg tttcgatctt cacctcaatg tcgtttgcat      4380
     cgttgaacat aagtgaatgt aaaccaatcg atggtgaaga tgatatcgac aaaaaaagct      4440
     tcgaacattg gaaagacctt ctcgaggctt cgatgcagtt cgcaggagtg atggacgagt      4500
     atacaaagat gagtatcttc aagataaaag caggatcaaa attgatggag acgcttgatg      4560
     gtactacttc ccgtgatgat gatccggatg tatcaatctt gccgtattcg aatgtaatgt      4620
     gccgattgaa aagatatttt aactcccgtg attacgttct actacagcgt cagaaactaa      4680
     agtcaatgtc tcagaaggaa gacgaatcgg atctaaaata tgtgagaaga gttgcagcgg      4740
     ttgccaagct atgtgactac agcgaagatc aaatgatgga gaatattgct gatgtggtcc      4800
     agtcacacgc attaaatcag aaagtgcgcg aagcaggccg aaaaatcatg agaaaaggtg      4860
     gcaaactcac tgaactcttg gataagatcc gcgggtacga aatcgaacat ctaaacgaac      4920
     aaactttcct gaaaaatcat caaaatacca attcaacata taagcaagta gcagccgttg      4980
     aatatgagca acgaatgcat ggtggaagtt ttcgccctca gcattctttt gtttctaaag      5040
     ctgtgagcag gccttacacg gtggcgtata atcaacccag atcggttgag aattttcgtg      5100
     gtaaaggaac tatgcgaaga ggaatgaata gaagcgtcgg agctggtcaa aagccttgct      5160
     ggagatgtac cgggaccttc catcgcccgt atgagtgtca tgcgatcaac aaggtttgcc      5220
     gcaaatgtca gcgtgttggg catatcgaac gagcttgtaa ccagatgcta aaagcaccat      5280
     caaggaaacg tcatgtttca aatgatagag aaatatctcc gcccccgaaa atgcgaaaaa      5340
     ttgcagcaat taccgaaacg gatcaagaaa tcattgaaga tgacaaagat tctgtaagtg      5400
     ttcactaaag agtaatttca aacaatgtat tactgcaata aatatatatt gaattcgaat      5460
     aaacatatgt atcggtgtag tttacattac ttgtgttata attactcaaa atcgtataga      5520
     aataaataat tttgattttc agaaatttcc aaataccgat gtgtgtattg atcaaccgat      5580
     aaaccagtcg accagtggct ctactggaac agtttcgctt gttgattcaa atgaacaagt      5640
     tgaactccag gttcgctcaa cagtacgacc tttgagttct tgcacacact ccggaaatat      5700
     tgttggattt atcgcaggcc tttccgtgga atttctaata gattctggag cagaagtgaa      5760
     tacagttagc gatcttgtgt tcgaggaatt gatgaatagt gatcgaaccg tttatgaatt      5820
     gaagagagga acagacaaat ccttgaaggc atatgcgtct cctggagaaa tttcagtagt      5880
     tgcttcattc gttgccgaac tttttgtatc aaatgatcgt ccacgatatt tggaaaagtt      5940
     ctatgtcatc tcaaatgcac gtcctctgct aggaagaaac acagcattaa gatatagcgt      6000
     actccagcta gggtttgacg tcccaatcca atattcggtt gaaaacatgc agaaagcata      6060
     tccttgtgaa atttttgcat tgtctgataa cggtgaattc cccaagttca acgttcctcc      6120
     tgtatcgctg gcgtatgata aatcaatacc ttcaactcga aatgtgttca ccaatattcc      6180
     tccagcgttt aaagaagaaa cagagcgtag actgaccggt ttgctttcat cggggatcat      6240
     tgaacgtgta acggataaga tggataaatc gttttgctcg tcgcttctag tcgtacctaa      6300
     aggaaaggac gacataagac tggtggtgga tcttcgtggg ccaaacaaat gtatcgtccg      6360
     ctctccattc aaaatgccaa ctttggattc aattcttccc gagcttcata aagcagcctt      6420
     tttctccacg attgatcttt ctagtgcctt tttccacatt gagttacatg aaaactcaag      6480
     gcacctaaca aatttctttg cgggtaatgc tacataccga tttaagaggc tgccgttcgg      6540
     attatgtaac gctcccgaca ttttccaaga aatttttcaa actgtagtgt tggcagactg      6600
     tcctggaacc gtgaactatt tggatgacgt actagtgcac ggaagtacct tggaagaaca      6660
     taacgttaac ttagaaagag tactcagccg tttgcgcagc cataacgttc ttttgaataa      6720
     tgagaaatgc aactttgcga aagagtccgt aaagtttatt ggattcagat ttgcacggga      6780
     tggcatcagc gtcgaagagg ataaaatgaa ggcagttaga gaatttcgaa ctccagaaac      6840
     actgttagaa gtgaaaagct tcctaggatt aatcaatttt tcggagcgct tcattttcaa      6900
     aagagctgat aagacaaaac atctaagaat gcttgcgaag tctaattttt tttactggac      6960
     ccagagtgaa gaggatgaat ttgttttctt gaagaatgaa gccttgcaat caatcaagaa      7020
     acttggttac ttcaatcatg aagatgagac tgagttgtat gtcgatgcat cgcctatcgg      7080
     cctcggggca gtacttgtgc agtacagtaa tgatggtctt ccaagaatta ttgcatgcgc      7140
     ttccaaagcc ttgacagcaa cggagcagaa gtaccctcac acacaaaagg aggcacttgc      7200
     tatggtctgg ggcgtagagc ggttttcata ttacctaatg agcaagaatt tcacaattcg      7260
     aaccgactcc gaagctaacc aattcatatt tggaagcatc aatcgtacca gcaagcgttc      7320
     aatgacacgg gcagaatcat gggccttaag gttactgcct taccgattca gcgttaagag      7380
     agttacaggc caatcgaata ttgcggatgt tctatctcgt ctgattagca agactcaagt      7440
     agacgaagcg ttcgacgaag ataatgatag aaatgtcatt tatgcattgg atgcggaaac      7500
     tatggatatc acctggacag atattgagct ggcttccgaa aatgacaacg aattggaaga      7560
     agttagatcg gctattggtt cgaataattg gccttggcat ttacgacgtt acgaatcaga      7620
     agcaagcgag ttgagagtat tgcaccccat gatcttcaag ggagataaga tagttcttcc      7680
     aaaggttctt cggaataaag cactggaaat agcacaccaa ggacacattg gttgcggagc      7740
     tacgaagaaa attatgcggg aatatttttg gtggccgaac atgagcaaag aggcggtcga      7800
     gtttgtcaag aaatgtgaga cttgtttact agtttcaaga agaaacccac ctattccact      7860
     aagtagccgt cagttaccta atgggccttg ggaaatattg caaatagatt ttctaaccat      7920
     tccgggttgc ggttcaggac atttcctcgt cgttgtggat acctattcga gataccttca      7980
     cactattgaa atgaagcaca ccgacgcaag aacaacaaat gcagctctct gtaagatttt      8040
     ttcgacgtgg ggaatgcctc ttattatgca aagtgataac gggcctccat ttcaaggcaa      8100
     tgagtttgta gagtattggg aagcaaaagg agtacgagtg cggaaatcca tcccgttgag      8160
     tcctcaatca aatggttccg ttgaacgtca gaaccaagga ataataaaag ctgtgtcagg      8220
     agctatagaa gatggcaaga attggaggga cgctttagag gcatacactc atttgcataa      8280
     cacactgaaa caccattcac gtctaggggt caccccattt gagttgatgg tgggatggaa      8340
     atatagggga acttttccat gcttgtggaa accagatcca gcaaaggaag tagatagaga      8400
     agaagtaaga gagtacgatg cagttgcaaa actcaacagc aaaaagtatg ccgactgtca      8460
     cagaggagcg aaggataccg atattgtagt gggagacaag gttgttgttg caaattacca      8520
     acgaaataaa atcgatccta cattctctaa ggaaagatac accgtgatag ctagacaggg      8580
     agctaaagtt gtcatacgaa atgacttcgg agtacaaatg gcaagaaatg ttcaagacat      8640
     caagcgtgac ctaacaatcc cacaaaacca ggaaaacggc gtagaagacg acttcgtgga      8700
     tatgcacggt atacaaactc aacagacaag tcccttagta aagtagatat caatagaaca      8760
     cgtactaatc taattcattt gcaggaaagt cattggataa cgctaatgaa actggacaga      8820
     cagacggtga agcgatgata aaagacaaca ttccaggaaa cgaagaagca tcagagcaaa      8880
     gtaccgattc catgcaccgt acactaaaca gcaaaccgaa gcgagtcctt tgtaggccaa      8940
     aaagattcga tgatatgatt ttatataata ttttctcata aagagtagag gaggagcaga      9000
     a                                                                      9001
//
ID   Gypsy-382_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   16-JAN-2019 (Rel. 25.01, Created)
DT   16-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-382_;
KW   Gypsy-382_AA-I; Gypsy-382_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 137-137 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 227 BP; 82 A; 22 C; 63 G; 60 T; 0 other;
     tgtagggaac gtaagggtta agacggtgtt aagatggtaa ctaggagtaa ttaggaaaag        60
     agaggagagg aagcagaggc gcaagagaaa tcgtgatcgt aggacccata gattttacaa       120
     atgaaaattc agtttgttgg tttgtttaac tgtgaataga cgtgtttgat ttgtggaagt       180
     aaaaaaaaaa acgtgttcag tttcattcgg aatggaaaat cactaca                     227
//
ID   Gypsy-383_AA-I repbase;    DNA;    INV; 6536 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-383_;
KW   Gypsy-383_AA-I; Gypsy-383_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6536
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6536
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6536 BP; 2097 A; 1538 C; 1377 G; 1524 T; 0 other;
     ttggcgccca gactgaaaaa cccacgttcg cgtttttcgt tttctgccaa cgcgtttgtc        60
     aagtgagtga taagtgattt ggacagtgca tcaacagtgt gcaagtgcaa gtaatatttc       120
     aaaatggatt ggaatcacct tacaccggag gagattgact ttgagctgct gttacgcaac       180
     accactggta ttcgaggcaa ggatcgagat tggaaaattt caagactgca acagctggta       240
     gaccgcgagc gaaatggaac accggcacct acatattcgt ctcacgttgt atcggacatg       300
     gacagcatat accactgtca aacaacactt tctccaatct tccacgccct gaacacagct       360
     attcagcaag gaaacaaatc ccagatcaca tcgttgagat caaggcttct gcattataaa       420
     ttcaggcttt cgctaatctc agactccatg atcctggaaa acgctaaaaa atcgtcagtg       480
     aaaatttgca gcgcactgcg acaaattgaa gaatctttgc aggacaatgt agtgggcggt       540
     caggatggaa aggaagatct ggaagatctt ccaagtgacc cggaaacatt gaagcgcttg       600
     aaaattgctc agcttcaatc aagtatcgac gaagcaggga aacaacagaa aatattggag       660
     caagagcttg aacaacaaca acaacaacaa caacatgaga agattcctca acagccttca       720
     catcaggaaa aagagattcc cgatacacat caacgacaac agctccacga tcaaaaccta       780
     caaaaatggc atcagcagca gttccagccg cagcaacatc ttcaggaacc ttccgaacag       840
     cgtcagcttc caaaccgtca agatcaacgc ctacagcagg atgaacagca agggtttcaa       900
     caagaacaaa gccttcagct gcttttgaac caaatgcaac tccagcagca acaactagag       960
     cagcaacttc agcaagaaca gtacagacga cagcagttag aatggcaatt acaacaccag      1020
     caacagcaac atagcatggc agcggcgcag caacatgcaa actacgttcc aaacaacacc      1080
     tttggatcaa tatcaggata ctgggatccg caaatacaaa gagaatccgg aatggctcaa      1140
     gttccacgca gaaacgttca aacaccaacg gtggacgtct tgaataggcc aaatacaccc      1200
     aggtccaatc aacaaaccaa ctccaatcgg tttttgcaac cggtgcataa gtggcctttt      1260
     gaatacgccg gagaaaacaa catcgtgaag ctaggagaat tcctcaacca tgtaaacact      1320
     tatgcggtta ctgaaggcat ggatgaccat tccttacttc gttcaatcaa gcatctactg      1380
     aaaggtcgtg ctctccaatg gtacacacgt tcattcctcg atctcacaac atgggatatc      1440
     ttcaaggcgg agatcaaaca ggagttcttg ccgccaaact attcggagat cgtgaagcag      1500
     gatctgtatt tgcgatttca aggaccgaac gagccgttca caaattttta cagagatttg      1560
     gttgcggcat ttgagatcgt tgagccagca atatcagaag ccgaaaaact gttcatcttg      1620
     aaatcacatc taaactcgga tttctccccg atcgctgcag cttcgcgatc cgctacggtc      1680
     agagacctcg tcacggtttg caaggatttt gaagtctcca ggccctactc aacacggggt      1740
     cgtaccccag cgaccgcaag gacattcaca gctcgtccag aaaacccccc actacaacga      1800
     ccaatctaca ataggatgga tggaacaaat cgccctacgc tgaacagaca accatatgga      1860
     acagctcaag tgaatatgat ggaactaaac caagaggtgg aagacgaaat agacccggtg      1920
     aatgttatgg agagagaggc attccagcta aacttagctt tccgcaatga atcggcgatg      1980
     aattccattg atgaagttaa tgctctgcgt gcgcagacaa actggagaca cggatcgtcg      2040
     gacaacgcac cccaagcctc ggcaggagat atcaccaata ggaattcggc aacagcaatt      2100
     gtttgctggc aatgtgatag tcctggacac acgtacctga gatgtcccaa cccaaaacgt      2160
     ttccttttct gctatagttg tggcaagaaa ggttgtacta cacgtaattg cgaattctgc      2220
     atactacggt ggcgacaact agatgcaaat aatggatctc aggctccggg aaaccggaat      2280
     tgggagaacc cacaataaag ggtgtggggt ctcccaagaa tgttgacgtt cccttactca      2340
     acaacattcc tgctttccaa aaggcgagtt cgatagtcat aaatgcagac aacaatgaca      2400
     accgaccata tgcttccata tcggtactag gtcgtcaact acgaggactt cttgacagtg      2460
     gtgcaacctg cagtctcatt ggaggctcat tatcgaagct tgccgatgag cttggcctgc      2520
     gtaaatttcc agttatagga gaagtgaaaa cagccgataa ttcaccccat gtagtatcat      2580
     tctactcaca cgtaccaatc acttacaaca acaaaagtac tacgttgcct atgcttttca      2640
     tcgaatctat gccgccaata ctgattctcg gaatggattt ctggggtaga tttggcataa      2700
     aaccggtaat ttgtggaatc acggatcaca ccaattcgaa agaatcgatt gtggagtctt      2760
     tgacgaagca acaacaagaa gagttgcaca aaacagtgca agctttcccg acatcacaaa      2820
     accaaggtcg ccttggctgg acggaccttt actgccacaa aatagacacc gggaacacac      2880
     caccattcaa gcaaagatac tatccaatgt cgaaattcgt cttggatgat ttaaacaaag      2940
     aagtggacag gatgctgcaa ctgggagtaa tagaagaagc agtttgctgt ccatggaata      3000
     acgccacggt cgctgtaaag aaaaaggacg ggtcaatgcg gttatgtttg gatgccagaa      3060
     agttgaactc ggtgctagtc caagaagctt atcctattcc acaaatcgcc tcaattgtca      3120
     acaatctaag tggttcgaaa tacttatcct cgatcgattt ggaatcagcc ttttggcaga      3180
     tacctctaga agaggaatcc aaacaaaaaa cagccttcac catccctcaa cgcggccatt      3240
     atcagttcac agtggtgcca tttgggctat caacagccag tcaggcactg tcacgcgtca      3300
     tgaaccacct gttcatagac ctcgaaccaa aagtatttgt ctatctggac gatctaatac      3360
     tagcgaccga atccttcgag gagcatgttg agctcctaca agagatagct agcaggttaa      3420
     aggcagcggg tttgaccatc aattcggaaa aatctgtttt ctgccggaaa agtttaagat      3480
     atataggtta cgtgctggat gcaactggct ggcacgttga tgatgacaag gtagcggcaa      3540
     tcagcaagtt tccaacgcca actactaaaa aagaagtgca aagattcatt ggtatgtgcg      3600
     gttggtaccg acgattcata aaggacttct cgaaaacagc tgctgcttta acggaactaa      3660
     cgaaagccaa aaccaaattc aaatggacgg aacaatgtga aaaagccttt caggcactaa      3720
     aattacatct agtttctgct ccaatactgg ccacgcctga ctactctcag ccattcgcga      3780
     ttgcttgcga tgcctctgat gtcgctatag gaggagtgtt gatgcaagaa atagctgggg      3840
     ttgaaaaggt tatttgctac ttctcccaaa aactttcgtc atctgaacgt caatattcag      3900
     tgacacaaag agagtgcttg gccgtaatac gctccataga aaaatttcga ggatatcttg      3960
     aaggaacgca ttttacggtc tactgcgatc attcaagcct aacctactta aagacgatga      4020
     aaaatccaac tcctcttctt gctagatgga ttttgcgcat gaatgcttac tcgtttgaca      4080
     tcaaatatcg caaaggaatt gctaacgttg tgccagactg ccttagtcga gtggagatag      4140
     tcaacaccat caataccact tctacggcgt ctgacccctg gttctcgaat ctattgaagg      4200
     gggtaaaagc ggatggcgac aagtatccag atttcagaat tgttggagaa catctctaca      4260
     aaaattgtat ggtaaaggat gaaacaggag ccagacatca tcgctggaaa agagtgattc      4320
     ccacaaatct tcgatcagac cttatgcatc gcttccatga cgtccctaca gcagctcatc      4380
     taggttatga ccgtacgctc aatcgtattc aaaaagacta ttactggccc caaatggcga      4440
     cagatgtccg aaaatacgta caaacttgcg aagtttgtaa agcttgcaag gcaccaaata      4500
     cgacattaac tccaactctg ggaaatccca aaccagctaa gctgccatgg gagcttatat      4560
     caatcgactg gatcgggcca attactaggt caaggaaagg aaatacggta ctcttagtga      4620
     ttgtggactg gattactaag ttcgtgatct gcgaaccatt tcgtacagct aacgctcaaa      4680
     aaatggtcat gttcctagaa aattacgtat ttctcaggtt ttcaacacca cggataattg      4740
     tttcagattc tggatcgcaa tttctgtcac acgtcttcca atctcttctg aagcggtaca      4800
     acattatcca tatgaggacg gcgttctaca cgcctatgtg caacgctgcc gaaaggacca      4860
     atcggactct agtaacgtgc atacgatgtc tactcgatga ggaccaaaga gactgggatg      4920
     tccacatcca gcaagtggtt tgtgcaataa acacagcgaa acacgaaacg ttaggatgca      4980
     ctccctactt ctgtaacttt ggaagagatc acatccttta tgcggaccaa tatccattag      5040
     caaaactgaa ttcggatgag gacacaagaa cagcccagaa atcgaggatc aaagccgcac      5100
     aaaacatcca acattttgtc ttgactaaga tcaaggctgc acatgacgac agcaaaaaac      5160
     gttatgacct aagggcacga agcagaacat tctcagtggg tgatattgtc tggagacgtt      5220
     ctttcgagct ttcaagcgca gcagatcatc ggactaaaaa gcttggtgca aaatttatcc      5280
     cttgcgtcgt acgacaggtt caaggctgca acaattacct gttggaagat gtgaaaactt      5340
     cgaaaaccgg ggtttatcat tcgaaggata tcaaatcaga ttaatactaa accagctatg      5400
     aacatgacta cagtctgacc aggagcgact acgccaaaaa actcgtgttg ctgactgact      5460
     cgtaggccca acaactttac agaaacctcg tcgtcagcaa ctactccacc acaacaagac      5520
     cttgccttgc agttaaggca cttaaaggct cagctatgtc cacagcagct ggttggctgt      5580
     caacaaagag cacaatcgcc aaaacaaaca tcgtgtccgg attactttag accagcatca      5640
     ctggtctaat cctctggaga tctggagacg atcaaccact ataaccaact tgggcaagca      5700
     tctgcagatc ggctagtgta ccatcgacgc ccaacagatg tccagctatg tacgcagagt      5760
     ttctgtccga ccatgagcat acagccaaca aaacatgcat gctgttgatt tgaagaacca      5820
     acaactcaaa aggaaacctc gtcacagcaa gttattcttc gtgtctctca acctcgattt      5880
     gttaagttca acgccaaaaa ccgctcaaca tgacttcaac aaatcaacgc aatagagaag      5940
     cagaagcagg tcgacactac gccatccagt atacgtcgac cactgtccca ataaaaacaa      6000
     caacatgata acaatccatg atcactcact agtctggtag aacaaaatcg ccaaaatgaa      6060
     cgctaatatc atgagctaat cagacccaaa tcaccaattc aaatttattc atgctgctta      6120
     gttaaggccc tcaagaagaa tttctctaat gtattttctc ggcaaaattt ctggcgccca      6180
     actaaaaatg taactcagac gttgaagaca agattgaacc tagcattaag atagagtaag      6240
     ggaagatgtg cttagatttt ccgcaatact gcggtgcata ttaggttctt gaaaagatct      6300
     gtcacaagga gtgtaccaag aacgatacta tcgataccgt tagctaataa gaattgtagt      6360
     gaagtaccgt tacaaacaag tagggcgaaa tcgatgtcca ataaggagaa gatctgatcg      6420
     atatcgttta gtttaaaaag caatcatact cttcaaggtc ttatcatcag ataaagaacg      6480
     aaatttttgc gaactaggcc attcgcaaaa atttcgttgg cgtttgaatg atgtag          6536
//
ID   Gypsy-383_AA-LTR repbase;    DNA;    INV; 1487 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-383_;
KW   Gypsy-383_AA-I; Gypsy-383_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1487
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1487
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 138-138 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1487 BP; 435 A; 359 C; 324 G; 369 T; 0 other;
     tgttaccaaa aattttgaag taatgccgac aaaatgtagc aatcatttcc cgcagtgcgt        60
     ttcctatcaa taaatgctat aaatcttacg aaacaacagc cgtagctcct ctctcgcaca       120
     cttcggatac taatccgaca actccaaagc catcctgctt acgcgaacag cagcccgaaa       180
     gcaatcaaga caatagcact atagcacagt catagtggct gaacagaagt tggtggtcgg       240
     tcgacgagtc aaagtctcat gcaagaaagt gaataaaaag tgcatgctag tttgcaaata       300
     tattcgttgt gcatattggc gaatctccag aaggtaaaag ggaaaagaca ctaaagtatg       360
     ttcagttcag aactaattcc ttctcatatt aaagtgacga atgcgccacg tgcaagacaa       420
     ctctcggtgc cagttgtacc ccacggattc tacactgcac gatactttgc atgattgagc       480
     aggtaacatt aggcgtattt agaccttaaa acccaaatgt accaacagct tctttacccg       540
     actcccccag actgaccaga ccagaccgaa aataccgacc gggacattac caggcatcgc       600
     aaccacccgc cacatgttcg aacaataggt aaccatgttc aattaatggt cccactttgg       660
     ctagggttca taaaatgtgc tttcagttcc actcgccctt gaacgatcgg gatttacggg       720
     agctcaataa tctgaagctg ggaaaaggcc cttcaccagg taaatgcttt acaatctgac       780
     ctgaagaacg acgatggaac taatttcccc tcatctctcc taaagagagg gccttttgtc       840
     cattgcctaa agactgtgcc gtcgatcacg accggctagc acacagcgac accgtctcgg       900
     atagtccaat ccagcccatc acctcattga gccttcgtca ttggacgatt attccaacaa       960
     aagcactcgt gatctgtgtg gcaagcagaa gtgcaatatc gtctcgccga agagagacgt      1020
     cgcgctggga ctctgtcgcg ctgggacttt gtcacgctgg gacttgtcgc gcaacatctt      1080
     cggtgcgaga gagtgagggc gtgtcgcagt gcagctcgcg acgcaaccgg tcgatcgctt      1140
     gtgacatcga agatgcagtc agcgcaacat cacggggccc ccaacgagta ttaacagcga      1200
     tggattatgt agggcaactt cgagcgtagg agataactgt atgtatacgg tagattaagc      1260
     atgattaaaa tatgatgatt taaagcagca aaacattctc gttagatgct gtaaatcctt      1320
     atgggatcat tattgtgcct gatagtttag acaatacttt attgatggtg cgcactattt      1380
     agttcgtcat cacgtattgg ttcaatcgta gattagaaca tagccattgt tagcgttcag      1440
     aatttccatt tagacagttt ccttagccca ataggaaaac tgtcaca                    1487
//
ID   Gypsy-384_AA-I repbase;    DNA;    INV; 4178 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-384_;
KW   Gypsy-384_AA-I; Gypsy-384_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4178
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4178
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4178 BP; 1495 A; 639 C; 728 G; 1316 T; 0 other;
     acttcagaag tgggataccg caatattttt cctcttaaaa agcgactacc atctaagatg        60
     cctcgtaccg ctagaagtcc actgcgtgcc cgccctgaat tggttgaatt ggattgcgaa       120
     aacgaaactc aagttggcgg tacaatccaa actaagaaag cacaagaagt taatgatgaa       180
     aatagaaata gtcaaatgaa cgctaatgtg aaaaacgatc ttcaacgagt tgctgatatt       240
     acaaacccag acataagaag acttgaaaat caacatccta tgcatccgga tgacgttaag       300
     aaattagtac ctttattcaa ccccaacgaa acgacctcaa acttatggat cgaaatcatt       360
     gaaaatttga aacgtttata cttttggtca aatcaaacaa ctctccatta tgctgtaact       420
     agattagggg acgttccacg attatggtat gaagctgttc gaggaaaaat cgaaaattgg       480
     gaagagactg agttgctgaa aggatttcca aatacactcg atgaagcaga tgtccatttc       540
     cgtttgatga atcgtttgaa aaaatcagat gaagatttcg aaaagtacgt gtacgaaatt       600
     atggcgattg gtaagactgt aaacctgagt gagccagcgc tgatcaagta ttacttaatg       660
     gaattcaaga taatgagctg cgagcaatgc tgtgtatgca gaaatttgat tcagtattgg       720
     aaatgatttg ttgcctcaag agattggaat ttttgaattg tatgaaaatg cctgccatta       780
     ttcgaaagcc gtcatcagac aaccgctgga tttgccacaa ttgtaatcaa gttgatcata       840
     tttcaagaaa ttgtacaaat tccgcaacca aatgtgctca atgtggtcga ctcggacact       900
     tttcgaaatt ttgccgtgct ggtacttcgt tggcgcagac ttctaagaat atgaattcga       960
     attcaagaga aatcaaccct tttggaaaag tatacacatc aaactttggt cgtcaagttc      1020
     cggatgtttc tcaattaaat tttgccaacc attttgaaca taatgttaat catctaggta      1080
     gtatagttag gatacaatta gttaaggatc atttcacgtc gttcattaga tttgacaatt      1140
     atttcaaacc agttttgaca ttgattgaca caggaagttc agttagtatg atcaaaaaaa      1200
     gctttctacc acctttattt aaaatatctt cattttcaaa tgatacagaa ttcagaggct      1260
     tgaacgttac agttgttaga atattaggta tgattactac ggaaatgatg ataaacaata      1320
     ttgtttttaa tttacagatt aaagtcgttc cggatgagac catgtacccg gattgtattg      1380
     ttggacgcga ttttatacgt gaaaatgatg tcaaacttac acatgaacgg gacttggtta      1440
     caatacagag ggaaccaact tgtcgcaaga acaaatctga aaatttcaat gaagctgaag      1500
     tttttcttaa tcaactttat tctatggagg taatcaattc accaacaagt gttaatgtag      1560
     tcgataattt agatataggt gattcaaaaa taactctcaa tgtcgtgaat cagattaaat      1620
     ctctttttat gcatgattat tttgaagcag ttaaaccgtc aaaacctgaa attgtccatg      1680
     aaatgaatat agagcttgat tgtaataaac cttttcattt ttctgcaaga aggttttcct      1740
     tttatcagaa aaaggaaata gaaaatacca ttgacaaatt attgaaggaa ggcacaattg      1800
     tcgaaagcaa ttctccttat gctagtagag tagttttagt aaaaaagaga gatggatcat      1860
     tcagaatgtg catagattac agagaactaa ataaacaaac cgtcaaagat cgttatccaa      1920
     ttccattaat tgacgatctt cttgatcagt tacgcgggaa aaaatatttt actagtttag      1980
     atttgaaaag tggttaccat caattaagac tttctgaaaa atcaacgaag tacacagcct      2040
     tcattacaca catgggtcaa tatgaatata aaagagtgcc ttttgggtta tgtaatgccc      2100
     catctgcttt tatgaggttc atacatcatg ttttccgtga attaattaag tctggcaaat      2160
     tgattattta tatcgatgac attttaatag caacagatac tgttgaagaa cacatgagta      2220
     ttttgaaaca ggtattcgaa attttaaaca aaaatttact cactcttcaa ttaagtaaat      2280
     gtgcgtttat taaaactgaa attgaatttc tcagtacagt acaagtacat cgttttgtag      2340
     gattagccag ttattttcgg agattcatcc atcaattttc tttgattgca agtccattga      2400
     atagtttaat cagtaaaaaa gaaaaatctt ttgattttgg cgtcgatcaa ttgaattcct      2460
     tcgaactttt gaagcaaaaa ctgacaagtg atcctgtact aaaaatatat aatccatcag      2520
     ctccaacaga gcttcacaca gatgccagta ttcatggctt tggtggagtg ttattacaaa      2580
     aacaatcaga tggccaattt caccccgtga tgtattttag taaacgcact acacttgcag      2640
     aaacaaagtt gcattctttt gaattggaaa catttgcagt ttataatagc ataaagaggt      2700
     ttcaaattta tatgcaagga attcatttca aactagtaac tgattgtaat gctctcacag      2760
     atacgttgaa aaagaaagat ataaatccaa aaattgccag atgggagata tttctttcag      2820
     atttcgattt tgagccaatt catagatctt caagtagcat gaagcatgtc gatgcattat      2880
     caagaattaa cagtatacat ttactagaca atacttgtaa tgattttgaa agagcattag      2940
     tagcttgtca actgagggac gcagaaataa acaaattaaa agatgaatta caaactgctg      3000
     aacacaaatt ttatgagtta cgcgatggaa tggtttatcg aaaatacaaa agcagattat      3060
     tattttatgt tccacatgat atggttaacc gcattattaa agtatgtcat gatgatttgg      3120
     gacattttgg atgtgataaa gtatgtgaaa tgattatgag atgttattgg tttccgaata      3180
     tgaaggaaag agtgataact tatataaaaa attgtctcaa gtgtgtaatg ttttcaaaaa      3240
     agttaagtaa atatgatgga caattacata atatcgataa aggtaataca ccttttgaaa      3300
     caactcatat tgaccattat ggccctttaa aactaaataa ttcaaaattt aagtttattt      3360
     ttggtatagt agacgggttt acaaagtata tcaaattata tccttgcaaa acaacaaata      3420
     ctagcgaagt tttgaaacat cttcggaact attgttcaaa ttattccatt ccaacaaaat      3480
     tagtttcgga tagaggttca tgttttacag caaatagttt taaaacattt atgaatgatt      3540
     caaatattaa acacgtgtta atagcttcag gttgcccaaa atcaaatggt caaattgaaa      3600
     gattcaatag aactattaca ccgcttatag ctaagttaat tgattctttt ccgtataaag      3660
     gtttgagtac aattctaaat gaagctgaat tgttgttaaa caatactgtt aatagaagta      3720
     catgtgaaac accatcaaaa ttattatttg gagtcaatca aaaatgtaaa acagatgatc      3780
     atataagaac ttatttagaa tcaaaattaa atgtggaaaa tctctttctg atattcgaca      3840
     aaaagcttct gaaaagatca aatcagctca attaagcaat aaaaagttct atgacaaaaa      3900
     atgtaaaatt aataatactt tcactgttgg tgatttggtt tacattccta atagaccaga      3960
     agttggagta tgtcgtaaac ttcaaaaaca atttaaaggt ccatatcaga ttaagaaaat      4020
     tcttccaaat aacagatttg tagtagcaga tattgatggt tttcaattga atcaagtgcc      4080
     gttcaattcg gtttttgatc cgtgtaattt aaagcattgg taacctattg attatgacaa      4140
     tacacttcgg gtcgaagtct tcttcaggat gaccgagt                              4178
//
ID   Gypsy-384_AA-LTR repbase;    DNA;    INV; 138 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-384_;
KW   Gypsy-384_AA-I; Gypsy-384_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-138
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-138
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 139-139 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 138 BP; 41 A; 27 C; 23 G; 47 T; 0 other;
     tatagtagcg tgttgatcta gtacgttgtt tattttcatt tccgttaaag taggctagag        60
     attatgaagt caggaatacc tttgtcaaat aaatcattct gtaccgaacc atcaaccact       120
     gcagtcatcc ttactaca                                                     138
//
ID   Gypsy-385_AA-I repbase;    DNA;    INV; 6987 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-385_;
KW   Gypsy-385_AA-I; Gypsy-385_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6987
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6987
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           775..2148
FT                 /product="Gypsy-385_AA-I_1p"
FT                 /translation="MNSQVQDILDRISALENVNQSGNLLNRIQNLETNVAN
FT                 RNQNLSFEDLSDPPLTLINPNGTPVSIESIEKIPDHVRDLPPFSGDPNEVS
FT                 TWITDVEDIINAYKPHTNSSIDERNKFYIICKTIRRKIKGEANDALVSSNV
FT                 NINWIAIKKTLLTYYGEKRDITSLDYQMMNSQQRGKSLEDYFDEINKYLSL
FT                 IVNQIKTSDKITHPEAVKALIETYNEKALDAFMRGLDGDLLGQFLKNYRPE
FT                 SLAQAYAYCISFQNVEFRKKMTKTKLQDTPQGPRNLIPNLFNKMPPKLPPK
FT                 PQINRYFDPYRNNFPQQFRQPPPIPYRQPQQIPFRQPQAIGQPPAIPFRQT
FT                 QTFGQPPAIPFRPQQRNPFRQDKPEPMEVDTSIRSRQVNYGNRPNSNQHQP
FT                 PQKRQRVFFTQGETDEDVEANQEIEPQDNFDDDEGMNFERYLREYSTQEQE
FT                 MEDYEAAELNFLG"
FT   CDS           2139..5312
FT                 /product="Gypsy-385_AA-I_2p"
FT                 /translation="FFRVNSSLPYFIYYGKAKTPLKILVDTGSNKNFIHPK
FT                 FTNLYHKNKPFIVSSVGGEIKIDRYSQGKFFKPFSDINVKFYHMEQLKTFD
FT                 AIVGHDTLKELGAIINIPKEVIILPNKTEIPLQQYKVQQINKIQIRDEHLN
FT                 NNEKQLLKNFLENFQDLFQPPDEKLPFTTRIEATIRTTDENPVYSKSYPYP
FT                 QALKQEVTKQINKLLNDGIIRPSHSPYNSPVWIVPKKLDASGQKKFRMVID
FT                 YRKINSKTISDRYPIPDTSAVLSNLGKNKYFTTLDLASGFHQIPMIEKDIE
FT                 KTAFSVNNGKYEFVRLPFGLKNAPSIFQRVMDDVLREHIGKICYVYIDDVI
FT                 IFSESLEKHFENLKIILETLRKANFKIQPDKSEFLKKEVEFLGFIVSENGL
FT                 KPNVKKIEAIQKYPEPKNLKELRAFLGLSGYYRRFVKNYAKLAKPLTKLLR
FT                 GEECHHGHDNCKECNSKKVTKHNSKTFLIKLDEEAKRSFELLKQILTSEDV
FT                 LSFPNFEKPFILTTDASDKAIGAVLSQQFSDGERPITFISRTLSKTEENYA
FT                 TNEKEMLAVVWALGALRNFIYGAKIKIYTDHLPLTFTISPKNNNAKLKRWK
FT                 AYIEEHDYEMFYKPGKSNVVADALSRIQINSLTPTRHSADNDDSCYIPSTE
FT                 SPINVFKNQLIFKIGQTSQYRLETPFQGYKRHTFIETRFNQEFLKNKLKNH
FT                 LNPRVLNGIYTSEPIMGTIQEIYREHFNPRIVKARFSQIQVTDLSDEEQQL
FT                 EEVKKIHTFAHRNAKENTLQLLKSFYFPRMHKTIQQYVKTCEICKTEKYER
FT                 NPQKYIHVKTPIPNYPSEIIHIDIFVYDQNNLYISSIDKFSKFLKIRPIRS
FT                 KSILDIQDVLIQLLFDWDVPAQIIMDNESSFISNVIEQRIKNLGIQIYKTP
FT                 IHRSETNGQIERCHSTLREIIRCIKSENTELSMNEIIQLAAHKYNNSIHSF
FT                 TKTTPHNILLGTNEQDLTFEERARQRDKNNEKIAKIFRKKNENINEDTQYN
FT                 LFEPGSIAYEKMHELSKKKSRYRKIVVKENHDTYIIDTSDRKIHKCDLRKT
FT                 L"
FT   CDS           5374..6972
FT                 /product="Gypsy-385_AA-I_3p"
FT                 /translation="MHIHDLNNSPLAVIPLGEAKIKIGFIRILHPIDLNDI
FT                 NNIIISINRDVQDRKQCNALQELITIKNRKLYETFLKIKPFIKRYKRWDAI
FT                 GTTWKWIAGSPDADDLRIINSSINALISNNNKQVMINTAIGHQIQGLTDVT
FT                 NGLLQNQYENTKNHSIEINQLIILSNLDLLQNQLETLEEAILLAKHGIPSS
FT                 KLLSIHTFNQIATQLSQHDIYLSSFEELLSRSTAQVIFNVTHIAYVLKIPQ
FT                 LSQNIYEYDYIDSTIKNQKRIMIEQNFLLKNETHVFELTQPCEEQSDYYLC
FT                 DSTSLSFTTDCIQQLIRGQHSNCNFEKVYSNGLIKRINDGTIFINDALADI
FT                 TSNCSNSNQKLNGTFLIQFEQCSLHINGELYSNFEVTIGGRPYLPTTGQLV
FT                 KEINIIDAPPPEYLRNLTLEHREKLNQIHLQTHSLKWKLNLFGSVGLSTTV
FT                 IIISIIGILFYLSRYSFTRIKLELPSYKADIPLSEFKAELNATAPSEDIQE
FT                 SSDELSNERKKEIQQFVNTPSPYRTINTTLEQLCGQS"
XX
SQ   Sequence 6987 BP; 2833 A; 1335 C; 1033 G; 1786 T; 0 other;
     ggcgcccgaa tagtgaagaa gtggtagtga ttattaagat tgtccttctt ttttaacaaa        60
     aaagtgtagt agttggctca aagagagaca cagcggtaga gcattgtgta cctttgaggt       120
     taagcacagg cgtacattct taggttatac tattgaagac gtctgaagaa caatccgaaa       180
     caatccatat cacaattctg tagccgtgtg gaggattcca ttagtacata cggaagagga       240
     ccaaaatcgc cacaccgaga cggattggat caccaccacc cagcttccca cagaaccaac       300
     tacaagacac ccggtctttt ctgtgcacaa aactggataa taggattcga taacacacga       360
     ccagcgccag gacctgttgg aagtctcact gtaagaggat tgaggatcaa cagtcacggt       420
     tcccgcagtt gtgagcgtcc ctcacaatgg tcaacattaa attgtaagta aaagaaatct       480
     tatacaacaa aaatatatca agaaagaaat acataacaaa gtgaaacaaa taagtgaaac       540
     aaataagtga aacaaataag tgaaacaaaa aagtgaaaca agcaattata acaagaatac       600
     aagcaaaatt atttattaca atcaaattta aaaccgataa attattttca acaaaaaatt       660
     ttaaaaacca aaccaattaa aagctctaac aaagctaacg aacgcaacga gcaaattcat       720
     taaatcatca ccacaattga tcaattaatt gcgaagttcc ataatctttc cattatgaat       780
     agccaagtac aagatattct cgacagaata tcagcacttg aaaatgtcaa tcaaagcggt       840
     aatctcttga atcggattca aaatctcgaa acaaacgtcg cgaatagaaa ccaaaattta       900
     tcttttgagg atctttctga tccaccattg acccttatta atcccaatgg aaccccagtt       960
     tccattgaat ctatcgaaaa aattccagac cacgttagag atcttccacc attttctgga      1020
     gatccaaacg aggttagcac ttggatcact gacgtcgaag atataatcaa tgcttataaa      1080
     cctcatacaa atagttctat agatgaaaga aacaagttct acatcatctg taagactata      1140
     cgaagaaaaa tcaaaggaga ggcaaatgac gcattagtat cgtcgaacgt aaatataaat      1200
     tggatagcga taaagaaaac acttctaaca tattatggag aaaaaaggga tatcacatca      1260
     ttagactacc aaatgatgaa cagccaacaa aggggtaaat cattagaaga ttactttgac      1320
     gagataaaca aatatttatc tctaatcgta aatcaaataa aaactagtga taagatcaca      1380
     cacccggaag cggttaaggc tttgatcgag acatacaacg agaaagcttt agacgctttc      1440
     atgagaggat tggacggaga tctacttgga cagttcctga aaaactatag acccgaatca      1500
     cttgcccaag cctatgcata ctgtattagt ttccagaatg tggaattccg taaaaagatg      1560
     acgaaaacga aactacagga tacaccacaa ggaccacgga acttaatacc taacctattt      1620
     aataaaatgc caccgaaatt accacctaaa ccacaaatta atagatactt tgacccatat      1680
     agaaacaatt tccctcaaca atttaggcaa ccaccaccaa ttccatacag gcaacctcaa      1740
     caaattcctt ttaggcaacc tcaagcaatc ggacaaccac cagcaattcc tttcaggcaa      1800
     acacaaacat ttggacaacc tccagcaatt cctttcaggc cccagcaacg caaccctttc      1860
     agacaagata aaccggaacc aatggaagtc gacacatcga taagatcaag acaggtaaat      1920
     tatggtaacc gaccaaattc gaaccaacat caacccccac aaaaaaggca aagagtcttc      1980
     tttacacaag gagaaactga cgaagacgtc gaggcaaacc aagaaattga acctcaagac      2040
     aactttgatg atgacgaggg tatgaatttt gagcgatacc tcagagaata ctccacacaa      2100
     gaacaagaga tggaagatta tgaagctgcg gaacttaatt ttttagggta aactccagtt      2160
     taccttattt catttactat ggtaaggcca aaacaccact caaaatatta gtagacaccg      2220
     gatcgaataa aaactttatt catccaaagt tcactaatct gtatcataaa aataaacctt      2280
     ttatagtctc ctcagtgggc ggcgaaatca aaatagatcg ctattcccaa ggaaaatttt      2340
     tcaaaccttt ttctgacatt aacgtcaaat tctatcacat ggaacaattg aaaacttttg      2400
     acgcaattgt tggccatgat actctgaaag aattaggagc aattattaac attcctaaag      2460
     aagtaataat tttaccgaac aaaactgaaa ttccacttca gcaatataaa gttcaacaaa      2520
     tcaacaagat acaaataaga gacgaacact tgaataataa tgaaaagcaa ttgttgaaaa      2580
     acttcttaga aaattttcaa gatttattcc aacctccaga tgaaaaatta ccatttacaa      2640
     cccgtattga agctacaata cgaaccacag atgaaaaccc agtatacagt aaaagttatc      2700
     catatccgca agcactaaaa caggaagtaa caaaacagat taataaatta ttgaacgatg      2760
     gaattattag accttcacat tcaccttaca actcaccagt ttggatagtt ccaaagaaac      2820
     tagatgcttc aggacagaaa aaattcagaa tggttataga ttacagaaaa ataaattcga      2880
     aaacaattag tgacagatat ccaattccag atacttcagc tgtactatca aacttaggaa      2940
     aaaacaaata tttcactaca ttagatttgg cttctggatt tcaccaaata ccaatgattg      3000
     aaaaggacat agaaaaaact gctttttcag taaacaacgg aaaatatgaa tttgtaagat      3060
     taccatttgg tttaaaaaac gctccctcca tatttcaacg agtaatggat gatgtattaa      3120
     gagaacatat tggaaaaatt tgctatgtat acattgatga cgtaataatc ttcagcgaaa      3180
     gtctcgaaaa acattttgaa aatttgaaaa taatccttga aactttaaga aaagctaatt      3240
     ttaaaattca acctgataaa tcagaatttc tcaaaaaaga agttgaattt ttaggattta      3300
     tagtatccga aaatggtttg aaaccaaatg ttaaaaaaat tgaagcaata caaaaatatc      3360
     ctgaacctaa aaatttaaaa gaactcagag catttcttgg actctctggt tactataggc      3420
     gtttcgtcaa gaattatgca aaacttgcaa aacccttgac aaaactttta agaggggagg      3480
     aatgtcacca tggacatgat aattgtaaag aatgtaattc aaagaaagtt acaaaacata      3540
     attcaaaaac atttttgatc aaattagatg aagaagctaa gcgatcattt gaattattga      3600
     agcaaatttt aacttcagaa gatgttttat ctttcccaaa ttttgaaaaa ccttttattc      3660
     tgacaacaga tgcttctgat aaagctattg gagcagtctt gtcgcaacaa ttctcagatg      3720
     gagagagacc tataacattt atttctcgca ctctatcaaa aactgaagaa aactacgcaa      3780
     caaacgaaaa agaaatgtta gcagtagtat gggcattagg agccttaaga aattttatat      3840
     acggagcaaa aatcaaaatc tacacagatc atctacctct tacgtttaca atttcaccca      3900
     aaaataacaa cgcaaaatta aaaagatgga aagcgtatat cgaagaacat gattatgaaa      3960
     tgttttacaa acctggaaag tctaacgtag tagctgacgc attatcaaga attcaaatca      4020
     attctttgac tcctacaaga cactcagcgg ataacgacga cagctgttat ataccttcaa      4080
     cagaatcacc cattaatgtt tttaaaaacc aattaatttt taaaattggc caaacttctc      4140
     aatatcgttt agaaactcct ttccaaggat ataaacgaca cacctttatt gaaactagat      4200
     ttaatcaaga gtttcttaaa aacaaattaa aaaatcattt gaacccacgt gtattgaacg      4260
     gtatctacac aagtgaacca attatgggaa caattcaaga aatttacaga gaacacttta      4320
     atcctagaat tgttaaagca cgattttctc aaatacaagt aaccgacctt agcgatgaag      4380
     aacaacaact cgaagaagtc aaaaagatac atacatttgc tcaccggaat gcaaaagaaa      4440
     atacgttgca attgttgaaa agtttttact ttcctagaat gcataaaact attcaacaat      4500
     acgtaaaaac atgtgaaata tgcaaaaccg aaaagtacga aagaaatcct caaaaatata      4560
     ttcatgtcaa aacacctatt ccaaattatc caagtgaaat cattcacatt gatattttcg      4620
     tttatgatca aaataatctc tacatctctt caattgacaa attttccaaa ttcttaaaaa      4680
     ttagacctat tagatcaaaa tcaattttgg acattcaaga tgtactaatt caattattat      4740
     ttgattggga tgttcccgca caaataataa tggataatga aagttcattc atatcaaatg      4800
     ttattgaaca aagaataaaa aatctaggta tccaaattta caaaactcca atccatagat      4860
     cagaaacaaa tggacaaata gaaagatgtc attcaactct cagagaaata ataagatgta      4920
     tcaaatcaga aaatacagaa cttagcatga acgaaataat acaattagca gctcacaaat      4980
     acaacaatag catacattct tttacgaaaa ccactccaca caatatctta ttaggcacaa      5040
     acgaacaaga tttaacattt gaagaaagag ctaggcaaag agataaaaac aacgaaaaaa      5100
     tcgcaaagat atttaggaag aaaaatgaaa atataaatga agacactcag tataatttat      5160
     ttgagccagg atctattgcg tatgaaaaaa tgcatgaatt atcaaagaag aaaagtcgtt      5220
     ataggaaaat tgttgtaaaa gaaaatcacg acacttacat aattgacacc tctgatcgaa      5280
     aaatacacaa atgcgatcta agaaaaactc tatgatttgt ctcatttcag atcacttctt      5340
     ctatgcatac ttttttcaat ttgttacagt ctaatgcata ttcacgactt gaataatagc      5400
     cctctagcag tcataccact aggagaagct aaaatcaaga taggtttcat tagaatttta      5460
     cacccaattg atttgaatga tataaacaat atcataattt caataaatag agatgttcaa      5520
     gatagaaaac aatgcaatgc cttacaggaa ctaataacaa tcaaaaatag aaaactttat      5580
     gaaacattcc taaaaataaa gccatttata aaaagataca aaagatggga tgcaattgga      5640
     acaacatgga aatggatagc aggatcacca gatgcagacg acctgagaat catcaactca      5700
     tcaatcaacg cattaatcag caacaacaac aaacaagtta tgatcaacac agctataggc      5760
     caccaaatcc aaggactcac ggatgtcact aacggactac ttcaaaacca gtacgagaac      5820
     acaaaaaacc actcgattga aatcaaccaa ctgatcattc tctcaaactt ggatcttctt      5880
     caaaaccaac tagaaactct ggaagaagca attctactcg caaaacacgg cataccaagc      5940
     agtaagttgt tatctataca cacattcaac caaatcgcaa ctcaactgtc acaacatgac      6000
     atatatctct catcatttga agaattacta agtcgatcaa cggcacaagt aatatttaat      6060
     gtaactcata ttgcttatgt actaaagatt ccccagctct cgcaaaacat ctacgaatat      6120
     gattacatag attcgacaat caaaaaccaa aaacgaatca tgattgagca aaatttttta      6180
     ctgaagaatg aaacgcatgt atttgaatta acacaaccat gtgaagaaca atcagattat      6240
     tatctatgtg attccacatc tctaagtttc acaactgatt gtatacaaca actgataaga      6300
     ggtcaacact cgaattgcaa tttcgaaaaa gtttattcaa atggactcat caaaagaata      6360
     aacgatggaa caatatttat aaacgacgca ttagccgata taacctcaaa ttgcagtaat      6420
     tccaatcaaa aattaaacgg aacatttttg atacaattcg aacagtgcag tctacatata      6480
     aatggagaac tctattccaa cttcgaagta accattggag gacgaccata cttaccaacc      6540
     acaggacaac tggtaaaaga aataaacatt atagatgccc caccaccaga atacctaagg      6600
     aatctcacat tggaacatcg agaaaaacta aatcaaatac atcttcaaac tcactcatta      6660
     aagtggaaac tcaacctctt cggatctgtt ggattatcca caactgtaat cataatctca      6720
     ataatcggaa tcttatttta tctttcaaga tattctttca ccagaataaa gcttgagtta      6780
     cccagttata aagcagatat accattgtca gaattcaaag ccgagttaaa cgccacagca      6840
     ccatcagaag acatccagga atcatcagac gagttatcga acgaaaggaa aaaggagatt      6900
     caacaattcg tcaacacgcc atcaccatac agaacgatca atacaactct cgagcaactt      6960
     tgcggacaaa gttaattaag aggggag                                          6987
//
ID   Gypsy-385_AA-LTR repbase;    DNA;    INV; 453 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-385_;
KW   Gypsy-385_AA-I; Gypsy-385_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-453
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-453
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 140-140 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 453 BP; 163 A; 100 C; 78 G; 109 T; 3 other;
     agacggacct agcaacagat gacgatcamg cgctagacac aatcgtaaca cccgccggtc        60
     aacaaaccca ttagaatcag gtcaccgtat catatcaccg ccacaccgct attggaatcg       120
     ttaattggaa acatgcgaag acatcgtaaa accacgagcc ataacaactc gtaaaaccac       180
     gaaccataac aaccgataaa gggaagccac aacagctgat atttgcatac cagccttttg       240
     tataatattt gctaaccaac catttgtata aatagctagg gcattccatt gcagattcag       300
     attcatttct cattccgaac agactacaag tcaggtaggc tagctaccta aagctagatt       360
     agtgttaaga taktgaatag tgaaatgtgt tagwtttaag ttaaaagaaa taaagtattt       420
     tttttatgca tccagcatag gaaaacacta act                                    453
//
ID   Gypsy-386_AA-I repbase;    DNA;    INV; 6460 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-386_;
KW   Gypsy-386_AA-I; Gypsy-386_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6460
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6460
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 121-121 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6460 BP; 2299 A; 1307 C; 1075 G; 1776 T; 3 other;
     aaaactataa ccggtagaaa tagccgggtt gtgtttaact gttcgacaaa gtgcggtgaa        60
     aatcttatta tctgattaag tcagaatagc ggttcaaaga gccgtatcgt gctgaaacaa       120
     gtcaacagtt ggttgaagga gccatcactg gatcgaaaag cggaacctgg gacactgtgg       180
     aatctatccc gatcggtgtc aggaacctta gtagctgacg caaaaaggac aactccgaag       240
     cacctgccct cgttccctcc gcacagcaag gaaacccgga aagtccaatg ctatatttaa       300
     tgtaagtaaa cctgtttatc acctcttaat ttctttaagt aatcttttac aaattttaca       360
     aatttamcaa aaaattttcc caaaattcta aatttaaaat tttaccaact ataaaagtga       420
     ttcctctttt gtgattagtg atcagtgttt agaaaaagtg ttaccaatct gaagccaaat       480
     aacaagaaaa agtcgcgaat cgatatatat ttcgaacgta tcatggctct aggtaatgtg       540
     ccagtcgcac caccgttatc aactgatgaa ttcattagta tcggaaaagt tcccgatttt       600
     gtaagggaca taaaaccatt tcacggtgat ccaactaagc tgacagattg gatcgctgac       660
     gttgactcca tttttcgtgc atatcgcgag aaaggagcca cacctgttca gataagcgtt       720
     ttagagagaa ccgttagacg aaaagttgac ggcgaagcag caaacgtttt aaatgcgaat       780
     aacattttaa cctcgtggcc tgatattaag aatactttaa tcctctacta caaagatcaa       840
     agggacgtaa aaactttgga ctatcagttg acttgcataa aaaagtcagc taacgaaagt       900
     ataaattctt attatwgcag agtaaatgag ttattatcac taataattgc ccaaatacaa       960
     acagatcccg tgatgcaaat gaatgcagcg gcacatatta attattttcg agacaaatcc      1020
     attgactctt ttataagagg tctwgagaag cctcttagta ttttgttgaa aagtaccaac      1080
     ccaactacac tgggtcaagc ttacaatttt tgcctcgagt accataatat ggatattcgt      1140
     tcctcaccat tcaaaaatga atttggtggt caaccagtac caaaaccccg tgaaccaccg      1200
     atgttgcgtc ctaggatgta cgccacacag ccaaacacat ttttaccgcc accgcctctt      1260
     ccgagacgac cccctatgaa cccatttttg actaacccat ttgctcaaaa accattccaa      1320
     caaaattctt tccgcccaaa tccatttcaa tcaaatccct ttaggcaaaa ttatccacca      1380
     aagccagctc atttccctca accgatggaa gtggatcaaa gtttgaaaac aggtgtaata      1440
     aactacagca atagacctcc gtttaattta aaacgaccct ttcctccatc acaacaatac      1500
     caaccaaatg ctaaaagaca ggctcatcca ttggaagcat gtacataccc agaatactat      1560
     gaatggtttg atgatcaacc atattgttat gacgagcgtt acctcgatta ttatacaaac      1620
     aattattcat ctgatgaact tcttcaagct gagcaagaaa cagaagaagc ttctggtgtc      1680
     aataaacctg tcgagtcaac agcatcagaa tcacaaacgg caaatttttt agaatggtgc      1740
     ccacaatttt aataccaacg atgccctaca ttaatttgaa aactaatata ggagagtttc      1800
     catttctaat cgacacaggt gcaaatataa atcttgttca tccaatgttg gcaaactatt      1860
     attcgttctc aaaaccttac tatttcaagg caaacaatat cggaagtgca aatggcaagt      1920
     tcaatgctaa taaagcaatt gacataaatt ttttccatcc taaaattaat catagtgccc      1980
     agttcctcct ccacgatttt catcctttct ttcatgggat aatcggaacg ggaatattaa      2040
     atgctttaaa tgcaaacata aatctcggat ccaacatgct gcagttaaac aaagataatg      2100
     aaacattgac cgtcccactt ctacaatatt cgcccgagca ttcaaataca aaaacagtca      2160
     ataacctacc tcaacagaat ccaccactcg agactcggat agtttgccag tcaagtcata      2220
     aacaaccaga gcacacgttc agaacatctc atcttacctc caatgaaaag gaacagctgc      2280
     taagtgtgtt gaaccgacac ggagaagcat tccacaagcc agattctaaa ctttcatgta      2340
     gcacagtagt cgagtgctcc ataaaaaccg tagatgatac tccaattcat caaaaagttt      2400
     acccctaccc cgctgcctat gctgcagagg taaacaaaca gattgaaaaa cttctccacg      2460
     atggaataat taggccatcg cgatcagcgt ggacatctcc agtctggatt gtcccaaaga      2520
     aaaacgatgc ctccggtgag aaaaagtttc gtatggtaat tgattaccgg aaactaaatg      2580
     aaaaaacgat ttcagatagg tacccgatgc ctgaaatcaa ttatgttatc gatcaactga      2640
     aaggccaaaa ttattttatt actcttgatc tagcctctgg ttttcaccag ataaagatga      2700
     aggaaagtga tattgagaaa actgcgtttt caattaacaa cggcaaatat gagttcactc      2760
     gtatgccgtt cggcttaaaa aatgctcccg cgatatttca acgagcaatc gatgatgtat      2820
     tgagggaaca tattggcaaa atatgttacg tctatattga tgacgttatc atatttggaa      2880
     aaactttgga agaagtactt cagaatcttg aaattattct agctgcattg aataatgcaa      2940
     atctaaagat tcagctggat aaatctgaat ttttgcataa agaagttgaa tttcttggct      3000
     acatcatcac cccagatggc ttgaaaccga atattaaaaa aatagatgct attgaacgat      3060
     atccggaacc gaaaaccatt aaagaattaa gatccttcct aggaatgatg ggatattata      3120
     gacggttcgt aaaagatttc gcgaaaatcg caaaacctct taccaacctt ctaagagggg      3180
     aaggatgtca ctcgaataaa aaacttgacc ttactgagtg tgaacagaat tgcttcacaa      3240
     aaatgaaaag tctgttatcc tcttcggata ttttaatata tccagattac agcaaaccat      3300
     ttctcttaac taccgatgct tcggactttg ccataggagc cgttttgtcc caaggcgaaa      3360
     atggaaagga caaacctatc cattttgcct ctagaagttt atcaaaatca gaagaaaagt      3420
     attcagtacc agaaaaggaa atgttggcca ttttttgggc cttacaaacg tttcgtaact      3480
     acttgtatgg gacgcgtttt aaaatattga cagatcacca accattaaca ttttctttat      3540
     cacccaagaa caccaacgcc aaattaaagc gatggaaggc gtatttagaa gaacacgact      3600
     accaaattga atataaacca ggaaaatcca atgttgttgc cgatgcatta agtcgtattg      3660
     tactatcaat gaccgggacc caacactccg cagacactag cgatgatatg tatattattt      3720
     ctaccgaatc acctttaaat gttttccaac atcaaataat aataaaaaac ggccctgata      3780
     aagttgaagt aagtcatcct tttccaaatt atacaagaat aacaatacat atacaaaata      3840
     ttaacgatga ttctctttta caggttttga agacccacgt caacccttgt aaattaaacg      3900
     gattgttaac agatgaaagg attatgggtc aaattcaaga agtatataaa aagcattttg      3960
     gtagggaaaa tctgttaaaa attcgttaca ctcaaaattt actcattgac gttcctgatg      4020
     agcatacgca atgggaaata atcaaaaaag aacactatcg agctcatcga ggcctagagg      4080
     aaaataaaat tcaaatctta agaaaatttt attttccaca attgagcaaa aaactacgcg      4140
     aatttacaaa taattgccaa ttgtgccaag agaacaagta cgatagaaat cctattcgtt      4200
     acccacttca gaagacacct attccaaatg caccattcca aatcgtccat atagatatca      4260
     tgttcataga aaaactgatt ttccttactt atgtcgataa gttttcaaaa tttgctcaag      4320
     ttcatccagt agaatctcga gctgctgtag atcttgtacc cgctattaag gaagtattat      4380
     caaaatttaa actaccagaa acggttgtaa tggacaacga aaaatcattt ttatccggtg      4440
     aacttgttaa ctttttcaat gaaaacaaaa taactcctta tgtagtagct acaggtcgaa      4500
     gcgagatgaa cggagtagtg gaaaggttcc attccacttt acaggaaatt tatcgaataa      4560
     caaaagctga aaatccgcat aataaaccaa aacaactaat cgaaatgtca gtaattaaat      4620
     ataattcgac cattcattct tgcacaaaat tcactccata tgagattata attccaagct      4680
     ctaaatcatc tcatataatc gagtcagttt acaacaatct caaaaagaaa caaacaaagg      4740
     atttaaacta ccataatagt aaactttcac cacgtcatat tccatcagat aagaatgtat      4800
     ttgaaaaaac aaggcgaagg gtaaaaaccg taccgcgata taaaaagatt agaattaaaa      4860
     atataaacaa aagtacaatt attacaacgg ataatagacg tgtacataaa aatgatttga      4920
     aaattcgtca gagctaattt gtatttattt cttattcaga ttaattctag tactctacgt      4980
     tggcctaagt cagccccaga cgatatcagt tcagagattg gataaccaac cgcttttcat      5040
     ctaccatcaa gggcatggac gaattcaaaa aggatattat tactatatac accattttaa      5100
     tttagattct ttcaaaacac agattcaaaa tttaaaatct cagtttaagc caatagacaa      5160
     caaccaattc acaaatttga taatttctaa atttaacgat attgattcca gtgttaagag      5220
     tcttttacct gtcaaaagag taaaacgatg ggatagccta gggactgcat ggaagtattt      5280
     agccggaaat ccagatgcca atgacttaaa ggtaattaac agctctatta ataatcttat      5340
     caacaacaat aataaacaag ttcggatcaa cagagaaatt tcgcttcaaa tgaaagaggc      5400
     cctttttaaa accaaagaat ctatacaatt gttcaattca aaatcctcag aattatattc      5460
     cattaacata tacttgaatc ttgaattttt atatgaccag ataaaagaga ctgtaatgtt      5520
     agcaaagata ggattgctta acgatagagt attgagtccg gctgaaatcg atatacttat      5580
     aaaagactta gctagggaaa atataacagt ctggaatacc gccgaagcat tgacttatgc      5640
     caccacgtcc atagttacca acgaacttga catcgctctg ctgatcaaac ttccgatgct      5700
     ggagtctaag atttacagga aaatctttat cctgccaacc tggtttaaac atcaacagat      5760
     ctatctttct aataaccatt accttaacca tgggaacaag tattatatcg ttcacagcct      5820
     taagccaaag atcttcgaga ctacagacat aacaccggat gatacagcat gtgtgcccaa      5880
     ccttttgacc gggaaaccag ccaaatgcga atacttggac aaccctatgg aagaggttgt      5940
     atcaatcgat aatcaacatc tctttaccaa tctacaaagg aatttcacca ttcacaccac      6000
     ttgtggatta ccgacgagga atctaacagg aacctatttt atctcattca gcaactgtga      6060
     ggtaaccatt aataacagta cgtttttaaa tcaaattcaa aataccaccg gtgaacctgt      6120
     gcacttacca ttatttggga ttccaatcga aaaacagcga acagttgtca acctaagtct      6180
     ggaacacctg cataacttgc atttagaaac aaggaaggag atgaaggcaa ttcgtttaaa      6240
     tgccactagt attcaatggc cacattggac agtttttgga gggctatcgg tcactcccat      6300
     tatcatatgt gctgtgttct ttttatttct ttgtcttaga ggatctaagg tgaaggtcca      6360
     tataacacag aaggaacgga ccccgaagga cgaaactacg gtcggtagta taccgataga      6420
     agagaccatt cgtacggagc ctcattttta aggaggggca                            6460
//
ID   Gypsy-386_AA-LTR repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-386_;
KW   Gypsy-386_AA-I; Gypsy-386_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-244
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-244
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 141-141 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 244 BP; 69 A; 52 C; 57 G; 66 T; 0 other;
     agttaactcc cgactttcat gggaaccagg agacgtgccg caagggtaaa catcgaaccg        60
     tgggaccaac ggtttgctga gtcgacgctg ctaccatgag atcgtgagac tgccatcgcc       120
     tagctaggga ccgtaggtta caaggtaatt aggattagaa taataaatca gttttagttt       180
     gaacacagaa ccgaacgttt cggcttttta ttttttggga actcccaact taaatctttt       240
     aact                                                                    244
//
ID   Gypsy-389_AA-I repbase;    DNA;    INV; 6156 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-389_;
KW   Gypsy-389_AA-I; Gypsy-389_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6156
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6156
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6156 BP; 1901 A; 1426 C; 1325 G; 1504 T; 0 other;
     ttggcgccca actccaaatc ccacacaatt tgattattac ttggatttat ctgtcaatac        60
     gtacacattt tgttgataaa ttcattcggt ccttagtgag tgagtcttgt gagctagttc       120
     agtgatcatg gatgtgaaag agctttcgga cgaggagttg gattacgaat tagaacttcg       180
     acgtgttcca gaacccaaaa agttaagcag gaaacggaaa gttgatcagt ttcgagcgct       240
     tatgaggcag gagcacatcg agctagtatg tccaacttca gcgcgacact ttatttcgga       300
     cgaagaaaat atccactatt gccagcaaaa actccagcgt ttggggtcta cactcctaag       360
     ggcattcaac aaccaggacg tagcagaact gcagaggtgt caaactaagt attaccacta       420
     ccgagcaagg atatctctta ttacggatcc gcattatgct ccgtacacca ggcaagcgga       480
     gatggtaatc aatgattctt tggatcaaat tgtgcagttc ttacagagtc taaccagcgt       540
     ttcgcctccg gacttttctc gtgaagacat tcttccaggg gaagaagatg tgctgaacag       600
     gttgaagaac tctcaacttc aatccagtgt gaaagcaaca acacaagggg aacttcatca       660
     gcaaggtgtg cctttgaact tatcgcatcg cagtaaaacg ggaactatac caaaaacgtc       720
     cgggcagcag caagcagaaa attatccacc accaccaaag agaacaccgc atcgtatcga       780
     tacagaagca cccagagccg aaattccacg agggcattat aatgttctac ctcctttacc       840
     agcaccaagg cctagcttgg aaagggttcc tgatccgaac cgagttcaac atcctccttc       900
     tgtgaacaac cagtcaacag acgtacgaga tgaaatcatc agatatctgc tcaacaaccg       960
     gaatcaagcg aatgaaagaa tggagccgca gacgcacaac agtggaagat ctacaccaaa      1020
     caacaggcag cggttcatcc aaccggtgta caagtggcca ttctcctacg gaggcaatga      1080
     aaatatcttg gagctggctg tgtttcttaa tcgggtaaag acgtatgctg atactgaaga      1140
     cgttgacgat ttttcgcttt tgcgtggaat caagcacatt ttgcggggac gtgccctgga      1200
     atggtacacc agaagctaca atcgattcaa cacatggatg gaattcaagc gtcagatcaa      1260
     ggcggaattt ttgccaccaa acttttccca gcttataaag cgtgaccttt attggaggtt      1320
     ccaagggcaa gatgaaacct tctcaaaata ctatcacgac ttgcttgcct tgtttgaggt      1380
     ccttgaacca cctttaactc ctcaagatca gttcttcatc gttaaatcta acctgaactc      1440
     agagtttgct gcagtggcgt cagcttcgcg ggtgtctgaa gtagcagaac tggtggaagt      1500
     ctgcaaggat tatgaccatg cgaagaacaa atcctcacag attccacgca cagctctaat      1560
     agaaccaaac cgagcaactc ccacctattc gcggatatcg agaccaggta cttctggtta      1620
     tgcttggaat cgtgctcctt tacagcagaa caggacacaa caagtgaacg tggtcgaaga      1680
     agaggaacta cacattaatc cacaggtgtt gatgctacaa gacggtaatc aagcatacga      1740
     gcaggaagat aatacaggta cagtagcgac tgttgaacaa tcggatgaac aaataaacgc      1800
     aattcggaca caaggcacgt ggaatcaagg aaacaacgca cctaatgcaa caagaaacgc      1860
     agttcacatc acttgttggc aatgcgagca agccggacat gcatttacag cgtgtcctag      1920
     tccaaagact ttcttgtttt gctaccgatg tggcaaaaag ggtttcacct caaggaattg      1980
     cagcgagtgt catgctagaa tgagtcaagc ccttccagac gcagcaatta gatccacaca      2040
     gggaaacgca aatacgggat tcccgaaatg aagggtgagg agtctccgtg tacagcaatc      2100
     ccttctctcg acagcatatc acatttccgt aacgtctcat ctatcatatt cgacatttca      2160
     tcaggagata accggcccta tgccgacgtt ggcatcatgg gaagaagtct gagaggatta      2220
     ttggacagtg gtgcaacatg tagtcttcta ggcggtaagc tcacggaaat tgtctccgag      2280
     gtgggattaa cgaaatatcc tgcccaggga acgattaaaa ctgcagacaa caccaaacat      2340
     ccggtttcct tttatgcgct gattccgatg gagtacaacc acaggaaagc atcccttcct      2400
     atcatctgcg tcgaatccat gcccgatgtt cttatcctag gaataaactt ttggaatctc      2460
     ttcggcgtca agatcaacgt ctgtggaatc gagctttctc cagattctga tttgtcaacc      2520
     ttaacttcac tatctgaaac tcagcggaaa gctttgcaag gtataattca gttatttccc      2580
     tcttctcaaa agacgaaccg tctaggccga acacatctct accaccacaa aatcgatacg      2640
     ggaacagcaa cacctttcaa acaaaaatac tatccgatat ctaaatttgt tttagacgac      2700
     ctcaacaaag aggtcgatcg catgttgaaa atggatgtga tagaagaggc catttgttgt      2760
     ccgtggaata atcccatcgt tgccgtgaag aagaaggatg gttcaatgag gctatgcttg      2820
     gatgcgagga agctaaacag catcatcatt caagaagctt atccaatacc tcacatcgca      2880
     tcgattatga acaatttgag tggctctaaa tacttaagtt ccattgacct agaggctgct      2940
     ttctggcaaa ttcccttgga cccagattcg aagcaaaaaa cggcttttac gataccacag      3000
     aggggacact accaattcaa agtagttcct tttgggttat ccacagcaag tcaggcgctt      3060
     tcaagagtca tgaatcacat tttcattgac ttggagccga aggtatttgt ttacctggat      3120
     gatctgataa tagcatccaa cgactttgat gaacatctta ggctgttgga ggaggtggct      3180
     agacgtttgc aagcggcggg gctcacaata aacgccgata aatccgtatt ttgcagaagg      3240
     agcatcaaat atctaggata tatcctagat gaaaacggtt ggaacgtgga caaggagaag      3300
     actgaagcca tcagtaactt tcctactccg acgtcaaaga aggaaattca gaggtttttg      3360
     ggcatgtgcg gttggtatcg gcgcttcatc aaagactttt ctaaagtggc agctcccctc      3420
     actgaattga ccaaagcgaa gatcaagttt cgatggaacg agtcttgcga aattgcgttc      3480
     aacactctca agcagctgct ttgcaccgct ccagtactta gcactcccga ctacacaaag      3540
     cccttcacga tatcctgtga cgccagtgat gttgccctag gcgcagtact ctcccaggac      3600
     tacgatggaa atgagagggc catcgcatac ttttcccaga agttgtcgcc ctccgaacga      3660
     aaatattcgg tcgcagaacg tgaatgcttg gcggtgattc gagcaattga aaaattccgg      3720
     ggttatgttg agggcaccag atttacagtt ttttgtgacc actccagtct aacatacttg      3780
     aagagtatga agaacccaac ccctctgatg gcccgctgga ttttacgctt gaacgctttc      3840
     tcgttcgata ttcggtaccg aaaaggtact tgtaacgttg ttccggattg cctcagcagg      3900
     cccggagaaa taagcgcaat ttctgatgac atgacaggaa aatctgatcc gtggttcgag      3960
     gacttactac ggatggtgca aaaagatggg aacaagtatc cagattttag aatagtgcaa      4020
     ggaaagctgt ttaaaaattg cttggtcaaa gacgatttcg gggtcaatag cacgagatgg      4080
     aaagaagttg taccggaagc gaaccgtcag gagatcatca gacgcttcca cgatctacca      4140
     acagcggctc acttaggata tagtcgtaca ttacacaaaa tccagttaga ttactattgg      4200
     cccaagatga ccgttggggt gaaaaactac gttaaaacat gcaatatctg caagtccagc      4260
     aaagctccaa cgacggttct cactcctcag atgggcaagg taaaacctgc tcgtcacccc      4320
     tgggaactca tatcaattga ctgggtgggt ccaatgatcc ggtcaaaaaa tggaaacacg      4380
     gtgctgttag ttatcgtcga ttggatcacg aaatacgtga ttgctgaacc gttcaggatt      4440
     gcaaatgcga aacaaatggt agagttcctc gaaaagtacg tcttcttgaa gttctcaacg      4500
     cctcgcatcg tacttacgga taacggatcc caatttcttt cgcactgctt ccaatcccta      4560
     ttgcgcagat ataatattga gccaatgaga acagcgtttt atactcccat gtgtaaccca      4620
     acagaacgaa ccaatagaac gctggtcacc tgtattagaa ccctgctaga tgatgatcaa      4680
     cgggactggg atgccaatct tcaacaaata atctgtgcta taaacacggc caagcacgag      4740
     acactgggtt gctcgcatta cttcgccaat tttgggagac atcatgtact attcacagac      4800
     caataccctc aagcagacct caacaccagc agtgacgcag atcaagcgca gagaacccgg      4860
     atgaaagtgg tccagaacat tcaacggttc attgtggaca gaatcaagtc ggcgcatgaa      4920
     aaaagtaaaa atcgctatga cttacgtgca aggcagagga agttctcgat cggggaacta      4980
     gtatggcgcc gaagttttca gcagtcttca gctgcggata tgcggaccaa gaaacttgga      5040
     cccaaatttc taccatgcta tgtacgagac atcatagggc aaaacaacta taaacttgaa      5100
     gatgtcaaaa cctctgcagt cggcacatat cacgcaaagg acataaaagc ggactaaact      5160
     atgtggtctg accttattct tcattcttca aacaatatgg agacaaatta ccagctatgt      5220
     ccacggcaca ccactagccg tcaacaacga gccttgcagc tcatgaaacc cgagtctcgg      5280
     attgatttga ggaccaacat ctgtaatcga aacctcgtca tccactgcgg cagcgatcaa      5340
     ccacaacgca acttcgagcg gaattcttca tctcctcacc agaagaaaac agcagagcag      5400
     gtataggacg ccggagttag ctacactatc ctgctaagcc aatttcaatc aacaattcac      5460
     cggtttcgaa atccagctat gtccgttgca ccccaggagt aaccaaccaa agacatacgt      5520
     catcaaaaca cgtttacgga tcgagttgag gaccaacaac attatacgaa acctcgccat      5580
     cccaaatcgg acgactcaat ttgaacttcc aatacggaca acaaccaaat aaaattccaa      5640
     ctccaagaaa actctcactc actaacaaag actcctcgca gtaacatgtc ctgaatcaca      5700
     ttcaaagatt caccgcccat ttaacgcaat agaaatccgc aaattcaagc aagcataaaa      5760
     aagttcaaaa aataagtgcc tcatgataat atgattactc gctaaattgt ttaattgttt      5820
     gttaatgtta aacttaaata gaggcaaata atagatatag gctttagacg taagatgatt      5880
     ttctctgtag tcgacactat agattgataa ttagccttgc aaaaactctg tcacttgtaa      5940
     gtagtgaagg caagccgatg tacttgagta gccttaagtt tctttttgtg tatcactaca      6000
     ataactggct ttggaatcca attttggaaa aatctgccga agcaatagaa gttaagatta      6060
     gccagtaacc tctattagtc ctcaaacgta atcatagctt acgaaatttt cgagaacgct      6120
     tttctcgaaa atttcgtttc ggtaatttag atgttg                                6156
//
ID   Gypsy-389_AA-LTR repbase;    DNA;    INV; 1740 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-389_;
KW   Gypsy-389_AA-I; Gypsy-389_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1740
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1740
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 142-142 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1740 BP; 538 A; 382 C; 419 G; 401 T; 0 other;
     tgttacaaat tgtttgaaac gaaatataat aaaatcactg cagcacgcaa cactgccaca        60
     tcatcatgaa aatcattaag attgttgccg tcagagcaac tctacacatg ccaaaactgc       120
     acgaaaactc tcgcactctc atgctctcga aaaagagaat cgaacattta cgacgactaa       180
     gctcacgaac ttgtacgttg ctgatcattc gttttctgct ggcttaaaaa gtggacgtac       240
     gggaggtgca tgactagcga agctagtgca cagattgagt gtggaaaaat caaatctcgg       300
     ctcaaagaaa aatcatcagg taattcgtca cgacgtagtc cagaatcgga cgtagtgcta       360
     aaatcaccat ttatgctagc aggtgtccga cgactccgat tcgaccatca atcggaaaga       420
     cacgctcaac ccgcatggaa aacggtgaaa cgacgctcac cagtattcca aaaggtaaaa       480
     tggcgtcata ttacaaagaa acctagacga taatgtcctt tcaccaacag aacccgtcca       540
     cacgcactcg ttgtagtgct agccaacact tcgatttgca accgaacgac gttcatctaa       600
     ggtaatggca gcatatttcc tcatatagga cttctaacta tagcgtttaa attcagccag       660
     cagaaacaat tgccgaaata acttggacag atcggcaaac cggttggaaa ttacctggcc       720
     gcgcatcacg gagacgagaa aatcgaaagg ctctctacgg aggtaatttc aaccaaaaat       780
     tccaattgga atgtgattat aattcctgct ttgtcaaaca gggccttttg ttcggaatcc       840
     tcaagcgtga tcgccatcgg ctacgaagag tgtgcgagag caagaagcac actccaacac       900
     cattagcgct atcgaatcgc acgacggtca ccgagtcaca cacacacgaa catccatgtc       960
     aaagctctca acgagcgtgc aatctcgagc cgcaagataa cgacgcagct acgggagcgg      1020
     gagaagcaac agggtgtgac tgtgtttaga acatcagcgt gatcacacgc aagtgaaggg      1080
     agtgatcggt gttgaatagc gagaaaaacg tttgagtgtg cgtcgaaccg tacaagtggc      1140
     cggagagcga tcagcgtagt gaagaccggc aggaccgttg gtgtgtcggc gtgcatcccc      1200
     ggttgcaagt ggtatcaggt gaatgcatcg catagtgagg tcggcttgca gttagtggca      1260
     gtgtgtgagt gcatgtgcag ttgaatctgc tcgaatagtg agcgctcgag aaaagcgcgt      1320
     tctgaaaagc agttgagaag agagaagaag aatatcatca tcatcgcatc gatgcggggc      1380
     cccggcaggt gcatcatcat caacagcatc ggtgcagcat cgtcagcatg tgagaaaggc      1440
     acaggtgtag tacctgatat ataaggtagg acagtatata agacctattg agcacaaata      1500
     gattgtgatg ctgagaatga atatgcttat gcttgtttac tttattgttt atggccacct      1560
     attggctgag cgagaatttc aaatccttta agagcgccat agccgggcag ggactttcaa      1620
     atgttacaaa tctcaatcac ccaattgtgt tggaccgtga acatgagttg acttatgcga      1680
     gttgagcact tggtgggaaa atcatttatt attgagcccc aaataataaa gttagtaata      1740
//
ID   Gypsy-38_AA-I repbase;    DNA;    INV; 6707 BP.
XX
AC   AAGE02019168;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_AA_;
KW   Gypsy-38_AA-LTR; Gypsy-38_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6707
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019168; Positions  153411  146705.
XX
CC   Positions [4993-5469] - Integrase core
CC   'CAGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           407..2674
FT                 /product="Gypsy-38_AA-I_2p"
FT                 /translation="MDLQAEYRQMNVSHLAEDEVEHELLIRNMLFHFDDHD
FT                 SVKRRKLKDRMKEERNVGINPTAFARTWRSAKEEIETIRSHVKVIGGIIEN
FT                 PRTDARQKEKMRTRFVHYRVRIGQLARATDARRYSAEITEIENQMDQIIAT
FT                 HLSKPLNPQSNPTKPKPIREKITQALDEVRTEIATLNDTVATLDSGDEGDE
FT                 IDEAVGGTNSSLVDQKRKEMEASKKRTEEILEKLNEYEQGKEINMAQLLPA
FT                 FRNFVIQTSEQQKSMREQEIRMAEERKKEMESQMKRKQNLEKLLTDLNESL
FT                 RVQPMNVASATADKHDSQGSDDSDDSRQITHSQSKSSKARTETRSSPKNTI
FT                 NSTDSSSEEIEQAGKRELKGNYVGKEKRKHNRKTEIRNKKKKNARSDSSEE
FT                 TLSLDSSESSESSDFSRSSADSSSDSTEEERKRRKRHQKKKKHRKSRNTMK
FT                 RIPVAEWKIRYDGKDDGRKIAEFLKEVKMRCRSEDVSDRELFRSAIHLFSG
FT                 RAKDWYIDGVENGDFRNWSELKKELKREFLPPDIDFQLEVQATNRRQLRGE
FT                 KFSDFFHEIQKIFHSMTKQLSEKRKFKIIWRNIRHDYKNALTGAGIKSLSK
FT                 LRRYGRKVDENFSFLQKQPEAMNRQRSSQVSEITSNPTKSKTGSSGNNTRV
FT                 FTNSRNQPKQKDSGEGKRDQKEIDRKEQGMREERSTPSVEKPTADKAVAVP
FT                 TRYQRPPIGTCYNCRNHGHHYSECSEKRGMFCRVCGFPNVFTSAYPACPKN
FT                 PEGSA"
FT   CDS           2575..5868
FT                 /product="Gypsy-38_AA-I_1p"
FT                 /translation="MFREKRYVLSGVWISKCFHKRLSGLPKKPGGISLRRQ
FT                 ADVNIEIPPNPNLIGSQLSSCGFEPLSTSDYDSQPSIEEIFVHIQGDGRPF
FT                 AKVNVLGVEVLGLLDSGAQRSVLGIGSDKLIKSLKLKIHPTPTSVKTAEGK
FT                 NVPVRGLVYLPITFRNQTRIIPTLVAPELRRRLILGFEDFWRMFNIRPTQQ
FT                 TGDGFVRIDEFESVEMNPFGEPVSDLTDEQSAQLENVKQLFKAAIDGETLG
FT                 VTPLISHKIEIKEEFQQSPPIRINPYPTSPEMQRKINREIDNLLTQKVIEK
FT                 SHSDWSLSTVPVVKPSGDVRLCLDARRLNERTRRDAYPLPHQDRILSRLGA
FT                 SKYMTTIDLTKAFLQIPLDDDSRKYTAFSVVGRGLFQFTRLPFGLVNSPAS
FT                 LSRLMDEVLGYGELEPNVFVYLDDIVVVSDTFEAHLQSLREVAKRLKSANL
FT                 SINLQKSKFCVTELPYLGYLLTSEGIRPNPERVDAILNYERPNSIRALRRF
FT                 LGMANYYRRFIAAFSEISAPLSNLLRKKPKGIVWNDEAETAFVRLKESLIS
FT                 APILSNPNFELPFQIQTDASDNAIAAVLTQVHDDGEKIIAYFSQKLTPAQQ
FT                 SYAATEKKGLAVISAIAKFRPYIEGMHFVVMTDASALTHIMNGKWKTSSRL
FT                 SRWSIDLQGYDFEIRHRRGRDNIIPDALSRAVEELEASEDDWYQDLVTKVE
FT                 KSPEANLDYRVEAGKLYKFVPTKTEVFDYRYEWKLCVPEGLRKEVLQKEHD
FT                 NAFHIGYEKLLDKVRQRYFWPNMAASIKKYVQSCHQCKEVKPTNVSQHPEM
FT                 GKQRLTTKPFQILSMDFIQSLPRSKSGNTHLLVLMDLFSKWTMLFPVKKIA
FT                 SDIVIRLVEQHWFRRYSVPEILITDNASCFLSKEFKAFLDRYHVQHWANAR
FT                 HHSQANPVERLNRSITSCIRTYVKTNQRLWDTRISEIEYTINNTRHSSTGF
FT                 TPYRVLYGHEIVADGDEHRLDVDTKEITEGDRIEQKLNIDKVIFDTVQKNL
FT                 IRAHEKSAHNYNLRFKKPAPVYLVGQKVFRRNFSQSSAADAYNAKLGPTYI
FT                 PCTIVARRGTSSYELIDSSEKNIGIFSAADLRPGGPENGSS"
XX
SQ   Sequence 6707 BP; 2142 A; 1325 C; 1546 G; 1694 T; 0 other;
     attggcgccc aacttaaaga aagcttactg atcagagctc aaagtaggag tggatttaaa        60
     tagattggag taggctttag ttttatgcat attgattacg taaatgtgct cggattggag       120
     aaaggggaag cgaattagaa ttgtgtagtg cgaaacacat tctctgcaga agatattgcg       180
     agatctgtgc ttttactagt gcgcgtacgt cgataagagc gaatacattt aacgaaagca       240
     gtgctaaata ggagcgcgcg aacaaatttt aggttatttt tcaatttttt tcttgatcaa       300
     tgggtcttga ctcgtgaaat atcatttaac tgcaagagga ttcgaacagt atctgttttt       360
     cagagcacac aatttttatt ggtattgtga ttgtgagagg aatatcatgg atttgcaagc       420
     ggaatacagg cagatgaacg tgtctcatct cgcagaagat gaagtcgaac acgagctctt       480
     aattcggaac atgttgttcc atttcgatga tcatgatagt gtaaaacgta ggaagcttaa       540
     ggataggatg aaggaagaga ggaatgtggg aataaacccc actgcttttg ccagaacttg       600
     gaggtctgca aaagaagaga tcgaaaccat cagatctcac gtcaaagtta tcggtgggat       660
     aattgagaac ccaagaactg atgctaggca gaaagagaaa atgagaaccc gtttcgtaca       720
     ttaccgcgtg agaataggtc agttagcgag agccacagat gctcgtcgat attcagcaga       780
     gattaccgaa atcgaaaacc aaatggatca gatcatagct actcacctat cgaagccttt       840
     gaacccacag agtaatccaa ctaaacccaa accaataaga gagaaaatta cacaggcttt       900
     agatgaggta cgcaccgaga tcgcaacctt aaatgatacg gttgcgactc tcgacagcgg       960
     tgatgagggg gatgaaatag atgaggcagt tggaggaaca aactctagct tagttgatca      1020
     gaaaaggaaa gagatggaag catcaaagaa aagaaccgag gaaattttgg aaaagctaaa      1080
     tgaatatgaa caaggaaagg aaatcaatat ggctcaattg ttgccagctt tcagaaattt      1140
     tgtcattcag acttcagaac agcagaaatc aatgcgtgag caggaaatca gaatggccga      1200
     ggaaagaaag aaggaaatgg aatcacaaat gaagagaaaa caaaatttgg aaaaattatt      1260
     aacagatttg aatgaaagtt tgagagtaca gcctatgaat gttgcttctg caactgcaga      1320
     taaacatgat agtcagggat cagatgattc tgacgattcg cgacaaatta cgcattctca      1380
     atcgaaatcg tcgaaagcga gaactgaaac tagaagctca ccgaaaaata ctattaactc      1440
     gactgatagt tccagcgagg aaattgaaca agctgggaaa cgagaattga aaggaaatta      1500
     tgtaggaaaa gaaaaacgga aacataatag gaaaactgaa atcagaaaca agaagaagaa      1560
     aaatgctaga tccgattcgt ctgaggaaac tctctcgcta gattcgtcag agagctcaga      1620
     gagctcagat ttttcacgtt cgagtgcgga tagttcatcc gactcgacag aggaagagag      1680
     gaaaaggagg aaaaggcatc agaagaaaaa gaagcatagg aagagtagga ataccatgaa      1740
     gagaattcct gtagcggaat ggaaaatcag gtatgacggt aaagatgatg gaagaaaaat      1800
     agcagaattt ttgaaagagg ttaaaatgcg ttgccggtcg gaagatgttt cggatcgtga      1860
     actatttcgt tctgccatac atttattttc gggtcgtgcc aaggattggt acatagacgg      1920
     ggttgagaat ggtgatttcc gaaattggtc ggaactcaag aaggagttga agagagaatt      1980
     tcttcctcct gacattgatt ttcagttaga agttcaggca actaaccgcc gccagcttcg      2040
     aggggaaaag ttttcagact ttttccacga gattcaaaaa attttccatt cgatgactaa      2100
     acagttatct gaaaagagaa agtttaaaat tatctggcgc aatatacgtc acgattataa      2160
     gaacgcctta acaggagctg gaattaaaag tttgagtaaa ttgcgaaggt atggtagaaa      2220
     agttgatgaa aactttagtt ttctacaaaa gcagccagag gctatgaatc gacagcgtag      2280
     tagccaagta agtgaaatta cctcaaatcc aactaaaagt aaaactggca gctctggtaa      2340
     taacacacga gtttttacca acagccgaaa ccagccaaag cagaaagatt caggggaggg      2400
     gaaaagggat caaaaggaaa tcgataggaa ggaacagggt atgagagagg agagaagcac      2460
     accatctgtg gagaagccca cagcggataa ggctgtagcg gtgcccacta gatatcagag      2520
     gccaccgata gggacctgtt ataattgccg caatcatgga catcactatt ctgaatgttc      2580
     cgagaaaaga ggtatgtttt gtcgggtgtg tggatttcca aatgttttca caagcgccta      2640
     tccggcttgc ccaaaaaacc cggagggatc agcttgagga ggcaagctga tgtgaacatc      2700
     gaaattcctc ccaatcccaa tctgattggt tctcaactga gttcctgtgg cttcgagcca      2760
     ctctccacat ctgattacga ctctcagcct agtatcgaag aaatttttgt acatattcag      2820
     ggggatggta gaccctttgc taaggttaac gttctgggtg ttgaagttct aggattgcta      2880
     gacagtggtg ctcagcgatc ggtgctggga atcggatcag ataaactaat caagtcttta      2940
     aaattgaaaa tacatccaac ccccacttca gtcaaaacag cagaagggaa aaatgtaccg      3000
     gttagaggtc tcgtatattt accgatcact tttcgtaacc aaacccgaat catacccaca      3060
     ctagtcgctc cagaactacg acgaagactc attttgggct tcgaggattt ctggagaatg      3120
     tttaatattc gacccactca acagacaggg gacgggttcg tgagaattga cgagtttgag      3180
     agtgttgaaa tgaatccctt tggagaacca gtatcggatc tcaccgatga gcagagtgcc      3240
     caacttgaga acgttaaaca acttttcaag gcagcaatcg atggtgagac ccttggtgta      3300
     actccgttga tctcacataa aattgagata aaagaggaat tccaacaatc tccgccaatt      3360
     cggattaacc cctaccccac ctctccagag atgcagagga aaattaatcg cgaaattgac      3420
     aatctcttaa ctcagaaagt tattgaaaag agtcacagtg actggtctct cagcactgtt      3480
     cctgttgtga aaccttcagg ggacgtgaga ttatgtttag acgctcggcg tctcaatgag      3540
     cgtactcgaa gggacgccta tcctctcccc caccaagacc gtatactgag tcgactaggg      3600
     gcgagcaagt acatgaccac gatagattta actaaagcgt ttcttcaaat cccactcgac      3660
     gatgactcaa gaaagtatac ggccttttct gtggtgggta gaggactgtt tcagttcacc      3720
     agattgcctt ttggcctcgt caatagccca gctagtttgt ctcggttaat ggacgaggtg      3780
     ttaggctatg gtgaactgga accaaatgtg ttcgtttacc tcgacgatat cgtcgtggta      3840
     agcgacacat ttgaggccca ccttcagagt ctccgcgaag tggcaaagcg actcaaatcc      3900
     gcaaacttgt caattaatct acaaaaatcg aagttttgcg taactgagtt accctatctc      3960
     ggttatttat taacttctga gggtattcgt ccaaatcccg agagagtgga tgccattcta      4020
     aactacgagc gacccaactc aattcgtgcc ctgcgccgct ttttgggcat ggcaaattat      4080
     tacaggcgct tcattgccgc ctttagcgaa attagtgctc ctctctcaaa tctgctcagg      4140
     aagaaaccga aaggaatagt gtggaacgat gaggccgaaa cagctttcgt tcgccttaag      4200
     gagagcctga tatcggcccc gatattgagt aatccaaact ttgagttacc ctttcagata      4260
     caaaccgatg ccagcgataa tgctatagcc gccgtgctaa cacaagtgca cgatgacggc      4320
     gagaagatta tcgcatattt ttcacaaaaa ttaacccccg cacagcagtc ttatgctgca      4380
     accgaaaaaa aaggattagc ggttatttca gctatcgcta agtttcgccc ctacattgaa      4440
     gggatgcatt ttgtggtaat gaccgatgct tcagccctta cgcatatcat gaatggaaag      4500
     tggaaaactt cgtctcgttt aagcagatgg agcattgacc tccagggata cgattttgag      4560
     atccgacatc ggcgaggtag ggacaatatt atcccggatg cgctctctcg agctgttgaa      4620
     gagctcgaag catcagaaga tgattggtat caggatctgg taaccaaagt tgagaaatct      4680
     ccggaggcaa atttggacta ccgtgtggag gcaggaaaat tgtacaagtt cgtaccgaca      4740
     aagacagaag tctttgatta ccggtacgaa tggaagttat gtgtgccaga aggtcttcga      4800
     aaagaagtcc ttcagaagga acatgataac gcgtttcata taggctacga gaaattgctg      4860
     gataaggtgc gacagcggta tttctggccc aatatggccg cttctataaa gaaatacgtt      4920
     cagagctgcc accagtgtaa agaggtcaag ccaacaaacg tttctcagca cccagaaatg      4980
     ggcaaacaac gtttgacgac taaaccgttt caaatacttt ccatggattt tatccaatcg      5040
     ttgccacgca gtaaatcagg taacacacac ctcctcgttc taatggacct gttttcaaag      5100
     tggacgatgt tgtttcccgt taagaaaatt gcctccgata ttgtaatccg tctggtagaa      5160
     cagcactggt ttagaaggta ctctgtgcca gagatattaa ttactgacaa tgccagctgc      5220
     ttcctcagca aggaattcaa agcctttctc gatcgatatc acgttcaaca ctgggctaat      5280
     gcacgccacc acagtcaggc aaacccagtc gagaggctaa atcgcagtat tacctcgtgt      5340
     attcgtacgt atgtgaagac gaatcagcgt ttgtgggata ctcggatctc agagatcgag      5400
     tataccatca ataacacacg tcactcgtcg acggggttca ctccataccg agtgctctac      5460
     ggtcacgaga ttgtggcaga cggtgatgaa cacaggctcg acgtggatac aaaggagatc      5520
     actgaggggg acagaattga gcagaagctc aatattgata aggtcatatt cgatacggtg      5580
     cagaaaaatc tcataagagc tcacgagaag agtgctcata attataattt gcgtttcaag      5640
     aagcctgcac ctgtctacct agtcggccag aaggttttcc gtcgaaattt ttcccaatcc      5700
     tcagcagcag atgcctacaa cgctaaattg ggacctacat acataccctg tacgattgta      5760
     gcccgccgtg gcacaagctc gtacgagctc atagacagtt cggaaaaaaa tattggaatc      5820
     ttctctgcgg ccgatctccg accaggaggc ccggagaatg gcagttcctg aatttataat      5880
     caattaaatt gaaaattcca ttaattcact attttagcta atttagattc cccagatgga      5940
     aatcgttggg atagttttaa ggtgcaccat acacttcgtc aattccgagc aataaattag      6000
     agacttgaga gtgagataga gttcaagatc agatcatttg gtattcgatt gtatggtagg      6060
     atttcataac aataatttcc atatttatat agttcctctt tagtcatttt gctgttaagt      6120
     tagatgatca cgctcaacga tatcgtagtt tgcacaatag gaggatcacc ggtcaatgtc      6180
     gtcaaaaatg taaaatgcca ccactccatt gggctacgaa aaatatctag cgctaatatt      6240
     tttcctacgg ttgtccagta gcaatggtca aaaatccaac atagtcgaaa ttccaaaata      6300
     gctcacaaac ttccatatct acacaaactc gtccaaccac aatcaccatg ccaataaatc      6360
     gcttgagatc agctttatct cgtgtagctc ttgccagtat ataagtagtg ttcgataaag      6420
     gttcatcctc tcaactttgt tgagatcttg ggatgagact aattgatcaa gagagtaagg      6480
     gtaaatacgt ttgtaaatgg ttacatgcct attgtcggca aaatttctat taagtactca      6540
     agacgttgaa atataagctc tttcggattc cgatgcttgc gaaaggcaaa ctcgaccctg      6600
     ggagtatagt tctacaatag tcttccggaa ataaattgat agtagtccta aatatatttc      6660
     aaaataaatt gatgaatcaa tttattttta cggggagtgt ggggtag                    6707
//
ID   Gypsy-38_AA-LTR repbase;    DNA;    INV; 1046 BP.
XX
AC   AAGE02019168;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_AA_;
KW   Gypsy-38_AA-I; Gypsy-38_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1046
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019168; Positions  146704  145659.
XX
SQ   Sequence 1046 BP; 319 A; 235 C; 245 G; 247 T; 0 other;
     tgttaccatt ctggtacgtt caccctataa ttccaatcca gagctagtga gtaataaact        60
     aggagataag agaggtatgc catactagag ttcggcatga atttgtagaa caatatgtgt       120
     ataacagttt actttttgaa ttatatacta taggtaagcc actcccaatc aatcaaccgc       180
     caaattgaat gtcaggaatt attgttagca cactatacat actacacaaa caacttgaca       240
     atatatatca cgggatgaca gaaggataag gtgggcattg gaagtttgga atggatcaag       300
     gagaagggtg gtggataagt gggtggctca gaagaggggg ggaggggctt agaggttagc       360
     taaggggtct gaaggataag atagttcttt ccaacttgaa ccaccaaagt gtaaagaact       420
     attcagttaa aattcagtta gtcactaaag tgccttatat agataaattg tgatatttat       480
     cgtggaggat aatcgttcgt taaaaagaat tcggtgataa attaccagcg aagtcaggta       540
     tggaagatat tcaaacgcca ttagtcagac ccagccctaa gacctcccat tcgtgccaca       600
     ataggaccca ttgttgcttc ttagcttgag cccagggaaa atccaagccg gatttccagg       660
     cactccgccg taggccctcc ccgggtccat ctacaagtag gaggcacgcc aaccggcggc       720
     catcttgttg ggagacacca cgccacccgt tcatcctcga gagcccaccc atccgcatcg       780
     cccgagtacc ccgtaagctg gccagcaact cacactacac catacacgcc acacagtaag       840
     tgtaataaaa acctaattaa agtgataaag tggtgttgtt ttactttggg cactgatcag       900
     taccacagcg aagagccgac cctgggaaaa gaggtggttg ttacccgccc cagacgactt       960
     ccgtggccgt gaccagaagt caggggtacc ccggtgacaa ggcccatctg gccgagtcat      1020
     cctagattcg aaataattgt ataaca                                           1046
//
ID   Gypsy-38_AnFu-I repbase;    DNA;    INV; 4179 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4179
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2922-2922 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..4161
FT                 /product="Gypsy-38_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MERTQLIAALVEEHTRLGLVKKCEERVLSATGTKDEM
FT                 AERIIEYDQSNTSQFVDAELPKITTVQPFFYRDVGDGIDAFSAGPEQDVRA
FT                 WIRSFEEVGTMVGWDEDQKLIMCRKKLTGIARSFLGTLRGVVNYATLRKAL
FT                 IDEFAPSVRASDIHRQLSTRRKNKNETGLEFVYAMQQIGQRIDLDEASLIE
FT                 YVADGITSDERQRILFYEAKNMFELKEKIRLYERATNKFHQVRPKTVIQRD
FT                 DEKVKQYHCFNCGDTSHRLAECPTKQDGPTCFKCGKKGHCAKDCLVPQGKR
FT                 PQCFSCGEIGHISTKCGKNNRVQAMTSSFPEVCVTIGNKASTAIVDTCSDV
FT                 TLMRFDLFQELNIDHDELKPSARVIKGYGGKAHSVCGEITIQAVIDEVKED
FT                 IRFVVVPLDSIDTKILIGINVLQEVDYSITNGEVKITKRKGEEECTVEDER
FT                 WVYQIVCENRQELDVPSSYRGVVSDMVKGYEPSKNSAVESELKICVSNQDV
FT                 VRTLPRRLAPLEKEVVRNQVREWLNDGIIQPSRSPYASAVVVVPKKDGSHR
FT                 VCIDYREMNKKIIRDSYPMPNIEDQIDQLAGARVYTVLDLKNS*FHVKVEK
FT                 ASRQYTSFVTMDGQYEFLRAPFGLCLSGNAFGRFIDSALQELILDGTMMAF
FT                 VDDIIIPSRDEEQGLTSLRRVLELSQRAGLQFNWKKCAFLKRRVEYLGYTI
FT                 YEGRIEPSPQKIEKVKFYPQPKTVKQLQRFIGLASYFRKFIQGFADIAKPL
FT                 TMILKKDVKFEFSEEAKVAFELIKEKLVVFPVLHIFDAKLETELHTDASKD
FT                 ALAGILLQRAEKDGMLHPCYYYSRLTNKAEKNYHSFELESLAVVESIKKFR
FT                 CYLLGKKFKVVTDCIAFKQSLDKKIPNPRVSRWLVALSEFEFEVEHRKGEK
FT                 MKHVDALSRANVLKISTVVSEKIIQAQLRDQKIIAIRNAIDQGKEQDKFCL
FT                 INGVVYKNVGNQNKLVVPQVMEMGIIREVHEKGHFS*RKMKECLSENYFIS
FT                 EVEKKIQECVDNCIRCIVNDRKRGRTEGELHPIPKGDVPLDTFHVDLLGPM
FT                 PSTRKSYNYIFTVVDAFTKYVWLFATKTTNAEEVIRKLTVISDVFGYPRRI
FT                 ICDRGSAFTSGLFKQYCEEANIMLHHIVTGVPRGNGQVERIHRIIIPTLAK
FT                 LSHENPENWFKFVNNVQTAINNSWQRSIRMIPFELMIGVKMRTKDNLHIYD
FT                 VLQEEVQKAFTDERQEMRVIACDGITRMQNENRKTYNLRRKPSKQFKVADI
FT                 VAIPITQFGVGRKIKRKYYGPYEIVKILPNERCEVKKLDDGDEGPTTTTTA
FT                 FDQLKPWANSGEL"
XX
SQ   Sequence 4179 BP; 1364 A; 697 C; 1045 G; 1073 T; 0 other;
     tgggggctca accgggatgg ttcaataaag cggtaatcgt gaattcaagt tgaagttgtt        60
     cagtgattta agttgaaagt tgtgaaagtc gtgttgacaa gttgtattga acgttgagaa       120
     tctttagtcg ggttgttgga ataattgtac gagttgagtc aagcgcttcg ttccaaaagt       180
     gaggttatgg agcgcacaca gttgattgcg gcgttggtag aagagcatac gcgtctcgga       240
     ttggtaaaaa agtgcgaaga acgcgtgtta tcggctactg gtacaaagga cgagatggcc       300
     gagcgtatta tcgaatacga tcagagtaat acatctcagt ttgtggatgc cgaattaccc       360
     aagatcacca cggtgcaacc tttcttttac cgtgatgttg gagatggcat tgatgcgttt       420
     agtgccggtc ccgagcaaga cgttcgcgca tggataagaa gctttgagga agttggtacg       480
     atggtcggat gggacgaaga ccaaaaattg attatgtgta ggaagaagct taccggcatt       540
     gcgcgcagct ttctagggac gctaagaggt gttgtgaatt atgctacgtt gcgtaaagcg       600
     ttaatcgacg agtttgctcc gagtgtacgc gctagcgaca tacacaggca attatctacc       660
     cgtcgcaaga ataaaaacga aacggggtta gagtttgtat atgccatgca gcaaatcggt       720
     caacggattg atctagacga agcaagtcta atagaatatg ttgcggatgg aattactagt       780
     gacgaaaggc aacgaatttt attctacgaa gccaagaata tgttcgaact caaggaaaaa       840
     atacgtttgt acgagagagc tacgaacaag tttcatcagg ttcgaccgaa aaccgttata       900
     caacgcgatg acgagaaagt gaaacaatac cattgcttca actgtggtga tacttcccat       960
     cggcttgccg aatgcccgac aaaacaagac ggacccacgt gctttaagtg tggtaaaaaa      1020
     ggacattgtg ccaaagattg tttggtaccg caagggaaga gaccacaatg cttcagttgc      1080
     ggtgaaatcg gccacatttc tacgaaatgc ggaaagaata acagggtgca agcaatgacg      1140
     agttcctttc ccgaagtatg tgtgacgatc gggaataagg cgagtacggc aatagtcgat      1200
     acgtgtagcg acgtgacgct catgcgattc gacttgttcc aagaactaaa catcgatcac      1260
     gatgagctaa aaccatccgc gcgggtgata aaagggtacg gtggaaaagc acatagtgtg      1320
     tgtggcgaaa taacaatcca agcggttatc gacgaagtga aggaagacat tcgtttcgtg      1380
     gtagtcccat tagattctat cgacaccaaa attctaattg gaattaacgt tctacaagaa      1440
     gtcgactatt cgatcacgaa cggtgaggta aaaataacga aacgaaaggg ggaagaagaa      1500
     tgtacggttg aggatgaacg ttgggtgtat caaatagtgt gcgaaaatcg gcaggagcta      1560
     gatgtaccat catcttatcg tggcgttgta agtgatatgg tgaaaggata tgaaccatcc      1620
     aaaaactctg ccgtagaaag tgagttgaaa atatgtgtga gtaatcaaga tgtggtacgc      1680
     acgttgccga gaagattagc tccattggag aaagaagtgg tgaggaatca agttcgagaa      1740
     tggttaaatg acggtataat ccaaccgtcg cgaagtccct acgccagtgc agtggtagtc      1800
     gttccaaaga aggatggttc ccatcgagta tgtattgatt accgtgagat gaataagaaa      1860
     atcattcgag attcttatcc aatgcctaac atcgaagatc agatcgacca gttggctggt      1920
     gcacgcgtgt atactgtgct ggatctgaag aactcgtaat ttcatgtgaa ggtggaaaag      1980
     gcaagtcgcc agtacacatc ctttgtgacg atggacggtc agtatgagtt tcttcgggct      2040
     ccctttggtt tatgcctcag tggaaatgca tttgggcgct tcatcgattc tgcactacaa      2100
     gagctgatcc tggatggtac catgatggcg tttgttgatg acatcatcat tccgtctcga      2160
     gatgaggagc agggcttgac atctttacgg cgtgtgctag aattgtcaca acgggctgga      2220
     cttcaattca actggaaaaa gtgtgctttc ctaaaacgtc gtgttgaata tttgggttat      2280
     acaatttacg aaggacgaat agaaccgtca ccgcaaaaga tagaaaaggt taagttctac      2340
     ccgcagccta aaacggtaaa acagctgcaa cgttttatag gtttggctag ttatttcaga      2400
     aagttcatcc aaggattcgc tgatattgcc aagccattga cgatgatatt aaaaaaggat      2460
     gttaaatttg aattcagtga agaggcaaaa gtagcatttg agttaatcaa agaaaaattg      2520
     gtcgtatttc cagtgttaca catatttgat gcgaagttgg aaaccgaatt acatacagac      2580
     gcgagcaaag atgctctcgc aggaatacta ttacaacgcg ctgaaaagga tggcatgttg      2640
     catccatgct attattatag tagattgacc aacaaggctg agaagaatta tcactcgttt      2700
     gaattagaat cacttgctgt tgttgagtcc ataaaaaagt tcaggtgtta tttgctgggt      2760
     aaaaagttta aggtggtgac agactgcata gcttttaagc aatcattgga taagaagatt      2820
     ccgaatccac gggtgagtcg ttggctagtg gcattgtctg agtttgagtt tgaagttgaa      2880
     caccgcaaag gtgaaaagat gaaacacgtt gatgctttgt cacgagcaaa tgttttgaaa      2940
     atttcaacgg ttgtgagcga aaaaataatt caagcacagt tgcgtgatca aaagataata      3000
     gccattagaa atgcgatcga tcagggaaaa gagcaggata agttttgttt gataaatgga      3060
     gtggtttata agaacgtagg taaccaaaac aaactagttg taccacaagt aatggaaatg      3120
     ggtataataa gagaagtcca cgagaaagga cattttagtt agagaaagat gaaagagtgt      3180
     ttatcggaaa actatttcat atcggaagta gaaaagaaaa ttcaggaatg cgttgacaac      3240
     tgtattcgat gtattgttaa tgatagaaaa cgcggaagaa cagaaggaga acttcatccg      3300
     ataccgaaag gtgacgttcc gttagatact ttccacgtgg atcttctagg tcctatgccg      3360
     tcaacgcgaa agtcgtataa ttatattttt actgttgtag atgcattcac aaaatacgtc      3420
     tggttatttg cgactaaaac tactaatgct gaagaagtta taaggaagtt gacagttata      3480
     tcagatgtat tcggataccc acgtaggatt atttgcgata gaggatctgc ctttacgtca      3540
     ggattgttta aacaatattg tgaggaggcc aatatcatgt tacatcatat tgttacaggg      3600
     gtaccgcgag gaaatggcca agtggaacgt attcatcgca taataatacc tacattagca      3660
     aagttgtcgc atgaaaatcc ggaaaattgg ttcaaatttg taaacaatgt acaaacagcg      3720
     attaacaata gttggcaacg atccataaga atgatcccat ttgaattaat gatcggtgtt      3780
     aagatgagaa cgaaggataa tttacatatc tacgatgtgt tacaagaaga agttcagaaa      3840
     gcatttactg atgaaagaca agagatgaga gttatagcat gtgatggtat aacaagaatg      3900
     caaaacgaga atcgtaaaac atataattta cgtcggaaac cgagtaaaca gttcaaagta      3960
     gcagacattg tagcaatacc gataactcaa ttcggagtag gtagaaaaat caaaagaaaa      4020
     tactatggac catacgaaat tgtgaagatc cttcctaatg agcgatgcga agtaaagaag      4080
     ttagacgatg gagatgaagg gccaactacg actacaacgg ctttcgatca attaaaacca      4140
     tgggccaatt caggagaatt gtaaggtcag gaaaggccg                             4179
//
ID   Gypsy-38_AnFu-LTR repbase;    DNA;    INV; 112 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-112
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2850-2850 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 112 BP; 41 A; 15 C; 21 G; 35 T; 0 other;
     tgtgggaacg aatgataatg ttagttgggc ggtatgccat aattttgtag caaacttata        60
     atttgtagct tataaaaagc gcaaaaataa taaaccgatt atcattccta ca               112
//
ID   Gypsy-38_CQ-I repbase;    DNA;    INV; 7860 BP.
XX
AC   AAWU01014491;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_CQ_;
KW   Gypsy-38_CQ-LTR; Gypsy-38_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7860
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 455-455 (2011).
XX
DR   GenBank; AAWU01014491; Positions   84087   91946.
XX
CC   Positions [4667-5146] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           318..2288
FT                 /product="Gypsy-38_CQ-I_2p"
FT                 /translation="MARLPCAEYLNAEQVDYELGIRNQLTPETDALDLVGK
FT                 QTLLRTLFKKDVKNWQNYHSHYMIGQEIDGIKKHVALMYSALLKTGRTPKI
FT                 EARLLHYWFRTKRCIAMSEEEKAQRREMVRELEGIMRKFEIEPPSPAQGQL
FT                 KHWLNPGTIPDPGNEVGADGNPAGGSGTSGNGTPAPGSGYGTPRTPGNHNT
FT                 GGNGGNGGGTGNEDGVMDRRLAHLERMLSGLTVTVTGMAEQQKSQLNQSQG
FT                 GNGNALGNPTGSIQKEKPRLRVRRSGLFSPVAITDSSDDDGDFESRKRHKD
FT                 TVKDSYQRGQAGKNRSDDDDLSSLLSYGSRGRRRHAERLDDRDLLYRIEKW
FT                 RLRFSGDNRSMSIEDFLYKLDTISRREGVSQEQIFRHAHMFLDGTASDWFF
FT                 TFVDEMDNWETFEKLVRIRFGNPNQEQGIRSRIQGRKQHRNEKFIEFATDI
FT                 ERLNKQLSKPLSTHSKFQTLWQNMHSHYRTRIAPGTQIKSLKDLTEACQRI
FT                 DAVDTSLNPSGEIAHQRMVNNVDVEESENDSEASADVNVVRTRQARDNRYT
FT                 ARRREQPEQEGEREKVFRQQPPQHQRTERNQVNPSHLGQLRHNQSHGGNGE
FT                 PSGVVKCWNCLEEGHIWRECSRPKVIFCYGCGNLGRTITCCDRCATRNFQF
FT                 SSRNNQGN"
FT   CDS           2240..5533
FT                 /product="Gypsy-38_CQ-I_1p"
FT                 /translation="MRDKKLPVQQPEQSGKLISGCKKGNPSNPQPELIPNA
FT                 RTNPTEFDPLLRVHHIRVSVTKCPHIRVKIFDLEMEALLDSGAGISVINSP
FT                 SLAEQYGLKIQPAAVKVSTADGTEYKCLGFLNIPFTYKNITRIIPTIIVPQ
FT                 ISRSLILGADFWESFKIQPMIDVGNGPESIETLDIATETQLCFNIEPSGEL
FT                 PKVDEKEPDDTLDIPAFDTPGEPAPESIETEHELTPEERAELIEVVKDFEF
FT                 TAPGKLGRTHLIQHEIILKEEAKPRNQPVYKCSPFIQKEIDAEIERFKELD
FT                 AIEECYSEWTNPLVPVRKSNGKIRVCLDSRRINAMTVKDAYPMQNMQDIFH
FT                 RLGRAKYFSIIDLKDAYFQIPLKEESRNFTAFRTSKGLFRFKVCPFGLTNA
FT                 PFTMCRLMNKVIGFDLQPQVFVYLDDIVIATEDLEQHLRLLRIVAERLRNG
FT                 GLTISLEKSRFCRKQVMYLGYLLTERGVCIDQSRIQPILDYARPKSVKDIR
FT                 RLMGLAGFYQRFIEGYSRITAPITDLLKKEKKKFTWSEEAEKSFNELKSVL
FT                 TSAPILANPDFTKPFTIESDASDNAVGAALVQEQEGETRIIAYFSKKLSST
FT                 QKRYSAVEKECLGVLLAIDNFRHYVEGTRFKVVTDARSLLWLFKIGAESGN
FT                 SKLLRWALRIQSYDIQLEYRKGKSNITADCLSRSIESLAVFQIDPDYEELA
FT                 AKIASSPTEYADYRVIDGRIMKYVKSSSRQQDPRFAWKQFPMPEERREIIQ
FT                 QEHNKAHFGFEKTVAAIKQRFFWPKMNEQIRKFCRECLPCQTSKAGNVNVT
FT                 PPMGSQKPVEYPWQFVTLDYIGPLPASGKNRCTYLLVATDVFSKFVLVQPF
FT                 REAKAGPLADFVENMIFRLFGVPEIILTDNGSQFVSKIFRGLLESYHVTHW
FT                 LTPAYHPQVNNTERVNRVITTAIRATLKKEHKHWADDIQAIAAAIRTAVHN
FT                 STKYSPYFIVFGRDQVSDGREYSRIRDTHAPEATKETEVSAQRKKLFEDVK
FT                 VNLAAAYQRHAKQYNLRSSSNCPKYAVGEKVLKKTFDLSDKGAGFCKKLAP
FT                 KYEPCVVKKVLGSNTYELETDEGKRIGVYFADQLKKLKSAD"
XX
SQ   Sequence 7860 BP; 2121 A; 1717 C; 1964 G; 2058 T; 0 other;
     tttggcgccc aacgagattt ggcacgtaaa ttttcttaag cgaattgatt tttttctggc        60
     tattttttct tttgtttgat tttttttttg gttctcgcag tttgattaac ttttgcgtaa       120
     tttttttctt gtaaataatt tgtagctttt aatttaattt tttgagtttt gaggcaattt       180
     atttggtttc ataaattctt cccgtttttc ttattcataa tttgtagttt taataatttt       240
     gtagttttag aaatttgtag atcttaagaa tatttttttt tgctgcacca ttccatttaa       300
     ataataatat tttcaaaatg gctcggcttc cttgtgcaga atatttgaat gcagagcaag       360
     ttgattatga gctagggatc cgcaaccaac tgacaccgga gactgacgct cttgatttgg       420
     taggcaaaca aacacttttg agaacactgt tcaaaaaaga cgttaaaaac tggcaaaatt       480
     accattctca ctacatgatt ggtcaagaaa ttgacggaat taagaaacat gtcgcgttga       540
     tgtacagtgc gttgctcaaa actggtcgaa ccccaaaaat tgaggctcgg ttgttgcact       600
     actggttccg aacgaaacgt tgtatagcta tgtctgagga ggagaaggct caaaggagag       660
     agatggtaag ggaactagag gggattatga gaaaatttga aattgaacca ccttcaccgg       720
     ctcagggaca gctcaagcat tggttgaatc ctgggacaat tccagatcca ggaaatgagg       780
     ttggcgcaga cggtaacccc gccggcggtt caggaacgtc cggaaacggt actccagcac       840
     caggaagcgg atacggtaca ccacgtacgc cgggaaacca caacaccggt ggaaatggag       900
     gtaacggtgg aggaaccgga aatgaggatg gggtcatgga tagacgcctt gctcatctgg       960
     aacggatgtt gtccggattg accgttacgg tcacgggtat ggccgagcag caaaaatctc      1020
     agctaaacca atctcaaggc ggcaacggga atgccctcgg gaatccaacc ggatcgattc      1080
     agaaggagaa accgagattg cgagtccgcc gcagtggttt gttttccccg gtcgcaatca      1140
     cagactcgag tgatgacgac ggggactttg aatcgaggaa acgtcacaag gacacggtaa      1200
     aagattctta tcaacgtggg caagcaggca agaaccgaag tgacgatgac gatctgtcct      1260
     cgcttctcag ttacggttcg cgtgggcgga gacgacacgc tgagcggttg gatgaccggg      1320
     atctgctgta ccggattgag aagtggaggt tgcggttctc aggggacaat aggtccatga      1380
     gcatcgaaga ttttttgtat aaattggaca caatttccag gcgcgaggga gtttctcagg      1440
     aacagatctt ccgacacgct cacatgtttc tggatgggac agcctcggat tggttcttca      1500
     cgtttgtcga tgagatggac aattgggaga cattcgagaa gctggtcagg attcgatttg      1560
     ggaatccaaa ccaggaacaa ggtattcgga gcagaatcca agggcggaaa caacaccgga      1620
     acgagaagtt catcgagttt gctacggaca tcgaaaggct caacaagcag ttgtcaaagc      1680
     cgctatcaac tcacagcaag ttccagacgc tctggcagaa catgcactcg cactaccgga      1740
     caagaatcgc acccggaacg caaatcaagt ccctgaaaga tttgacagaa gcgtgtcaac      1800
     ggatcgacgc tgtggacacg agcttgaatc cgtccggtga aatagctcac caaaggatgg      1860
     tgaacaacgt ggacgttgaa gagagcgaga acgattctga ggcgtcggcg gatgtaaacg      1920
     tggtacgaac ccgtcaggcg agggacaacc ggtacacggc taggcggcga gaacaacccg      1980
     agcaagaagg agagcgagaa aaggtattcc ggcagcaacc tccgcagcat cagaggacgg      2040
     aacggaatca ggtgaaccca agccacctag gacagctacg acacaaccaa agtcacggcg      2100
     gaaacggtga accatccggc gttgtgaagt gctggaactg tctggaagag ggccacatct      2160
     ggagagagtg ttcgcgtccc aaggtgatct tctgctacgg ttgcggaaac ctaggccgaa      2220
     ctatcacgtg ttgcgataga tgcgcgacaa gaaacttcca gttcagcagc cggaacaatc      2280
     agggaaacta atttcggggt gcaagaaagg gaatcctagc aacccccaac ctgaattgat      2340
     tcccaacgca agaacaaatc ctactgaatt tgacccactt ttaagagtac accacatccg      2400
     cgtgagtgtg accaaatgtc cacacatccg cgtgaagata ttcgacctcg agatggaagc      2460
     gctgctggat tcgggcgctg gaatcagcgt gatcaactcg ccgagcttag ctgagcaata      2520
     cggcctgaag atccagcccg cagcggtaaa agtcagcacg gcagatggca cggagtacaa      2580
     atgtttaggc tttttgaaca ttccgtttac ctacaagaac atcacgagaa ttatccctac      2640
     gattattgtc cctcagattt ccaggtcgct gattctaggt gccgactttt gggaaagctt      2700
     taagatccag ccgatgatcg acgttggcaa cggaccagag tccatcgaaa cgctggacat      2760
     cgcgaccgaa acgcaactct gttttaacat cgaaccgtct ggtgagcttc cgaaggtcga      2820
     cgagaaagag ccagacgata ccctggacat tccagcgttc gacacgcctg gcgaaccagc      2880
     tcccgagagc atcgagacgg aacacgagct gacgccggaa gagcgggcgg aactgatcga      2940
     agtcgtcaag gatttcgagt tcaccgcgcc cgggaagcta ggacgcacac atttaatcca      3000
     gcacgagatc atcctgaagg aggaagcaaa gccgaggaac cagcccgtct acaagtgttc      3060
     gccgttcatc cagaaggaga tcgacgcgga gatcgagcgg ttcaaggagc tcgacgccat      3120
     cgaggagtgt tactccgagt ggacgaaccc gttggtgccg gtccggaaat cgaacggcaa      3180
     gatcagggtt tgtctcgatt cacggcggat caacgcgatg acggtcaagg acgcgtatcc      3240
     gatgcaaaat atgcaggata tttttcaccg gctgggccgc gcgaagtact tttcaattat      3300
     cgatttgaag gacgcttact tccagattcc gttgaaggag gagagtagga atttcacggc      3360
     ttttcggaca tccaaggggt tgttccggtt taaggtctgc ccgtttggtc tgaccaacgc      3420
     accgttcact atgtgccggc ttatgaacaa ggtcataggt ttcgaccttc agccgcaggt      3480
     cttcgtctat ctcgacgaca tagtgatcgc gaccgaggat ctggaacagc atctgcggtt      3540
     gctgcgaatc gtggccgaac ggttacgtaa cggcggtctc acgatctctc ttgagaagtc      3600
     ccgtttctgc aggaagcagg ttatgtacct gggctatctg ctgacggaac gaggtgtgtg      3660
     cattgaccag tcgcggatcc aaccgatcct ggattacgct cggccgaaga gcgtgaagga      3720
     catccggcga ctcatgggcc tcgcgggctt ctaccagagg tttatcgagg ggtacagccg      3780
     cattacggcg ccgatcacgg atcttttgaa gaaggaaaag aagaagttta cgtggtccga      3840
     agaagcggag aaaagtttca acgaactgaa gtcggttctg acgtccgcgc cgattctggc      3900
     caatccggac ttcaccaaac cgttcacgat cgaatctgac gcttcggaca acgccgtagg      3960
     agccgcgttg gtccaggaac aagagggaga aacccgaatt atcgcgtact tcagcaaaaa      4020
     gctcagcagt acgcaaaaac gatattcggc tgttgagaag gaatgtttgg gggtactctt      4080
     agcgatcgac aacttccggc attacgtcga ggggacacgc ttcaaggtgg tcaccgacgc      4140
     gcgcagcttg ttgtggttgt tcaagattgg ggcggagtcc ggcaactcga aacttcttcg      4200
     ttgggccctc cgcattcagt cgtacgacat ccaacttgaa taccggaagg gcaagagcaa      4260
     catcaccgcg gactgcctgt cgcgttccat cgagtctctg gccgtttttc agatcgatcc      4320
     ggactacgag gaactcgctg ctaagatcgc gtccagcccg acggagtacg cagattaccg      4380
     ggtgatcgac ggaaggatca tgaagtacgt caagagctcg tcgcggcaac aggacccacg      4440
     gttcgcttgg aagcagtttc cgatgcccga ggagaggaga gagatcatcc agcaggagca      4500
     caacaaggcg cacttcggat ttgagaagac ggtggcggcc atcaagcagc gatttttctg      4560
     gccgaagatg aacgagcaga tccgcaagtt ctgtcgcgaa tgcctaccgt gccagaccag      4620
     caaggccgga aacgttaatg tcacgccgcc catgggatcg cagaaacctg tcgagtaccc      4680
     gtggcaattc gtgacgctcg attacatcgg cccgttgccc gcgtccggaa agaaccgctg      4740
     cacctatctt ctcgttgcga ccgacgtgtt tagtaaattc gtcctcgtcc aaccattccg      4800
     agaggccaaa gccggtcctc tagcggattt tgtcgaaaac atgatcttcc gactgttcgg      4860
     cgtacccgag atcattctca cggacaacgg gtcccaattc gtctctaaga tcttcagggg      4920
     tttgttggaa tcgtaccacg tgacgcactg gttgacacct gcctaccacc cgcaagtcaa      4980
     caacacggag cgcgtgaaca gggtcatcac gacggcaata cgagccacgc tgaagaagga      5040
     gcacaagcat tgggcggatg acatccaagc cattgcggcc gcgatccgga ccgctgtcca      5100
     caactcgacc aagtacagtc cgtatttcat cgtgttcgga agagaccaag tttcagacgg      5160
     aagggagtac tcgcggatca gagacacgca cgccccggag gcgaccaagg agacggaagt      5220
     ctcagcgcag aggaagaagc tgttcgaaga cgtgaaggtg aacctggcgg ccgcgtatca      5280
     gcgccacgcg aagcagtaca acctgcgatc tagctcgaac tgcccgaagt acgccgtagg      5340
     ggaaaaggtc ctcaagaaga cgttcgacct gtccgacaaa ggagcagggt tttgtaagaa      5400
     gctggcccct aagtacgagc cgtgcgtggt gaagaaggtt ctgggaagca acacctacga      5460
     gttggaaact gacgagggaa aaagaattgg agtttacttc gcagaccagc tgaaaaagct      5520
     gaaatctgct gactgatttt gacgaaattt gtaaatatta tgacccaaca agctatgtaa      5580
     cttttatcac cattcaaaag tgaccacaag ttcgaaaatg aacgaatttt caaaaatacc      5640
     attaatggga aatttaaaac cacgaaaatc caccgatttt gactcctgtc gaggcagatg      5700
     atttgataat gggaggttaa ttcgatcaat gaaacccttg aacgcgggaa agcttttcat      5760
     tccacaaata agattgagtt aggtcgatga ccggcccaga gtagtgaact cgattcatga      5820
     ctgtttaacg ggagactaaa cgatgatatc gaatgagtcg tggcctgaat caggcgaaag      5880
     aaaaaaaagc gagtaccaaa cgatcgtatt gaccgaacag catcgaaaat tcacgccaaa      5940
     acgacggaat ttgtacaaat ttgtaaatat ttagacataa tttagttagt aaaagtttag      6000
     ttagtagtgt acctacatta attctagttt tagtacttat tctattgaat tttgttagga      6060
     aacttgaaaa ctattcacgg ttttgcacag gggacagtgt gcagctgttt gctgtagttt      6120
     tttcgaagct tttccatctt gttatcatct ttttgtaaat attttccatc cttttccatt      6180
     gtgtacatat tttccatctt gatgatattt tgttgcattt ccagttgata atttttccat      6240
     tttgcatatt ttttcgatga atttcctcca gtagtggtca aggttgatgt tcacctaaaa      6300
     ctgacacatt ctggcattag ttttttgtaa atatttagtg aattgtgcta attagcactc      6360
     aaattacctt ttttcattga attttccctc gcagtaagtt tttccatcgg aggtaaatag      6420
     ttgcttccat aatatcagca taatttctaa ttggtgttga ttatggtcga tgaagtagtt      6480
     ttgtttacgt tgagaggttt gctttaccga tcttcttctc ctttgcagtt cttcttgatc      6540
     gatcctcctt tgtatttagt cgtaggtaaa cattgcattt ttttccattc gcgccgcatg      6600
     atcacgttgc agagtgagcg aaagctctac tttgccgaca agaatctgcg ctatttttag      6660
     tttcttcagt tcttttgatc cagttcatcc aggttctatg gccgccttct gcagcctgca      6720
     cctgaaaata aaatagaaaa aaaacacctt tttacaacca aacacaatta gcgacacatt      6780
     caatttcact ttccttttcc gtttttccat cactagagca gttttcctag caccataaca      6840
     ttttttccgc gacaaaaaca cagatttccc gacacacatt ttttttcgtt ccacgcactt      6900
     tgtttacatc ccgttgactg gtagactggt aacagggtga acgtgaaaat gaacacttgt      6960
     tcattcagga tggacgaggg gtacgtcaat gcagtttttt ttatgttttg ttgtttcatg      7020
     aacagtttcg taattaatgc aaattaatgt tagagattgt tgtgaatttg agttttaaac      7080
     ctcatggaaa cgtttttttg gggatttccc gaggtagttt cctgttgttt agaacagacc      7140
     aatttttttt aagacaaatt tgatgatgtt ctgttttctt gggaaatttt cttctgaggt      7200
     ttgaacactc gttaaatttg tcggttattt tttcacttaa ggtgatagat tgaatagagc      7260
     gactctttgg ttttttggtg tttatcactg aggtagaagg tcgttgctga tttttttggg      7320
     aatgttttta ggatgagatt ttttttatga ttgttagaat gtttgcgatg ccagctacca      7380
     ggaaactttt caaagtcagt tctcaatatt ttttgcagta attcagttca agatcaacag      7440
     atgatttatg ctattgtttg atattttttt gaagttgcgg ttttttttga tatcctttcc      7500
     tcatgtaata tattttttag ctcttcttta ttcttgtaca tattttttgc cgaagttttg      7560
     tagatattat tatagtttta tttcgatgaa ttttatatga agttttggat ttgcttagta      7620
     gcttctgctg gagaccggag tctaaacacg ttgatggtct agtagcaggc gtagtttttg      7680
     aaactacgtg ctggaaacag agagtgagcc actggcgatg accctatatg accccggaag      7740
     cgaaatgtta ttcagagatt cagataaatt tcagcttcga aaatttgatt ggttttgggt      7800
     aagaaatttt caatttcagt tccaaaccaa tcaaattttc gaaaatttag tagggaatga      7860
//
ID   Gypsy-38_CQ-LTR repbase;    DNA;    INV; 1928 BP.
XX
AC   AAWU01014491;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_CQ_;
KW   Gypsy-38_CQ-I; Gypsy-38_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1928
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 456-456 (2011).
XX
DR   GenBank; AAWU01014491; Positions   82159   84086.
XX
SQ   Sequence 1928 BP; 455 A; 493 C; 486 G; 494 T; 0 other;
     tgtagcagta ccatcagtac aaccctttgc cgcaagacag acagaaaaga tgaattcgcc        60
     aatattttag cgtgccataa ttatggttgg cttatcttct cgcgctacgc ctcgacctaa       120
     ttatgtcatg ggttgagcgc caccccttat gggagacttt caaaatactt tgccttgacc       180
     tgttatgaga tccgcacaag aaggaagaat cttcagatgc taaagtttgc gacaagagca       240
     ctttttgact cgaacgggag gtcgatgcac tccagttcgg cagtcagaga ttgcaaattc       300
     ttaagagatg cttcggctaa actcgcacaa tgattgcaat tgtaatgttg ctcgagttct       360
     agagaaccga agttgtccta attgcacctc tactgagggt tctaggactt cgactcggtc       420
     acttttaccc tgatcgtgga ggaagcagga gtggtcgaag gaccgttttg gaatcgtttg       480
     agttaggtag tttaaagtcg tgcgaagtgt ttcagtggca gaggttaatc ctgcaccttt       540
     acttttagag ctcgcggcta gtaggagtta ggagtagggt agtggcagat taaagggcga       600
     aaccctgaca catccagagt gaacgtagta caatcgaggt taccgtagtg cagttggcta       660
     attttgggga attggttggg cgatcttctc ggcacaggtg gcaaccggca tcatccgtag       720
     cagagagacc actccaaccg tcaacccagc gcttttggac tccaccaagg ggtcaaagtt       780
     ccggggtgaa cccccaagca gctcgtccgt caacatacga gctgggcggc gtccgtcaac       840
     acacgccgcg gtcgaaccct cgatcaccaa ccgaccggac cgggacggcc tcgtggaggc       900
     ctaggtccac cgccaagttc ccgcgcgcac ccgcgccgtc gtcgcaaccg acgctatcat       960
     cgcagcatcc tagctgcacg cctgtgcgcc cccgcacacc ggaagtgatg ctgaacaccc      1020
     gccgatagtg ccaacccgtc tgctgttagc cgccggcgga accatctcgc cgtagccgaa      1080
     gcggtaagcg cgccaccacc tgatcgccgg atcgccaacc aacacacgta aatccatggt      1140
     cgtgtaagta caaacccttt ttcgacatgc gcatgatcga tcgttggcca acactctttc      1200
     cgccaaccca gtgggcaaca taagccaccc ccatgttatg ttgcgtgatc gcaagcccca      1260
     gtgaattata gcgatccccg aatgaatttc gccccccaag ccaacgcaca ctactagcca      1320
     gccagtgcac tgccgtcagg tagagagaca ggaattctct tgtggtaccg aggtaccgtg      1380
     gtagactagc atgcagaaga tctgcggatc gaatctcgta ggccgaagta ttttttttgt      1440
     aaataaataa attgtagcta ctgaattatg cgaacctgaa tatacgtttt ttgagtttct      1500
     agagtaattt tgtagttttt tctgatgttt tctgggatat ctttccacga ctttcgcggt      1560
     agttttctga tgtttggttc cgccattctg gcttctgaag cgttctgggg aaagttgatt      1620
     ggggagattt tctacctgtg atgataagaa cggggcaagt acaatctttt gttttctaga      1680
     tctgaggtat ttttttttga gtttgcgatc tttttcttcc gtttgtagcg cctcggctaa      1740
     ccgccgagtt ctcggatgag tcggatcgtt ctcaatcaca aattttggca tcaaggatac      1800
     acccgccctg tggcagggtc tcatagctgg gcaaagcagc acatgatgaa tggtctccct      1860
     ttgggagtgg cgcttaagcc attcgtttaa ttacgccaat gcgatccgac cgaccgcctc      1920
     cggttaca                                                               1928
//
ID   Gypsy-38_DAn-I repbase;    DNA;    INV; 4540 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_DAn_;
KW   Gypsy-38_DAn-LTR; Gypsy-38_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4540
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 309-309 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1532-1957] - Reverse transcriptase
CC   Positions [3158-3631] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4126
FT                 /product="Gypsy-38_DAn-I_1p"
FT                 /translation="MELQNKNLIELVKAIKTTVPDAGQNKTVQLPKFNPDK
FT                 PGANASSWCTTVEVILQENTLRSSALVMALSSALEGSASQWLSQVCYAEIT
FT                 WPEFKELFIQRFDTIETPAAMFLNMLSNRPTDGESLAVHASRMVTELTTKW
FT                 RQMDNEEIAVSVTLALLASFDHRLQRLSFTSNVRTGVDLQSELKAFTFIKR
FT                 KSGAMEHQAETYSKRQKQSPMECHFCGKVGHKMAECRFRKQQNQFATDKTQ
FT                 HGRHDVHHRGKSNLTCYKCGELGHISTQCTKKEADRNKAFNREKRVEQCSV
FT                 AVPKGCLNHRGQIFEITFDSGSECSLIKEKLSTKFSGKRFNNIVMLKGIGS
FT                 NGICSTVQILSNVKIDDYCIEILFHVIGDDDMQNDIVIGREILNQGLDIVI
FT                 SSNQFRISKTKVVNLCTGNEPADIDTELEGQDKIKLHSLLAKYSNSFITGI
FT                 PSTKVRIGEMKIRLIDPTKTVQRRPYRLSPCERDLVRDKINELLKCNIIRP
FT                 SCSPYASPILLVKKKNGTDRLCVDFRELNSNTVADKYPLPLIQDQINRLGG
FT                 VNYFTCLDMASGYYQIPLHSDSIEYTAFVTPDGQYEFLSMPFGLKNAPSVF
FT                 QRLVIQALGDLANSFVIVYMDDIMIAASTKCEALERLQIVLDVLTKAGFSF
FT                 NLTKCSFMKTSVQYLGYNISAGEIRPNPQKVVALTALPPPQSVTSLRQFIG
FT                 LASYFRQFIKGFSQLMKPLYFLTADKNKFIWKTEHEQIRKKVIATLTDKPV
FT                 LVIFDPYYPIELHTDASCSGYGAILLHKINNKPQVIEYYSKTTSPAESRYH
FT                 SYELETLAVVNAIKHFRHYLLGRNFLVYTDCNSLKAARNKRDLTPRAQRWW
FT                 GYLQQFTFDIQYREGKRMAHVDFLSRNPLSKKSTTTAKIVEEKRVNLAEIS
FT                 SNWLIAEQRRDVDIVEIVKHFKNSSLPEDIAKTYELRAEVLHRKIQRNGRT
FT                 RCLPVVPRAFRWSVINQVHESIMHLGFEKTLDKTYDFYWFDNMSKYVKKFV
FT                 DNCITCKMSKSTSGKIQAELHPIPKVTIPWHTIHIDITGKLSGKSDQKEYV
FT                 IVQIDAFTKYVYLSHSLKLDSESCIRAVQSAVSLFGVPNRIIADQGRCFTG
FT                 AKFSQFCSDQKIKLHLIATGASRANGQVERTMSTLKNMLTAVETGTQSWQD
FT                 VLGEVQLAINCTTNRTTKASPLEMLLGKVARPLGLLPPSDIENVIDLPNVR
FT                 AQAAKNVLASAAYDKERFDRNKAKIKRHKIGDFVLLKSEERHQTKLSPKFR
FT                 GPFEIVKVLEGDRYILKSLTSKRNYKYAHEDLRKLPEGQVPEELNVYDDYN
FT                 NLDERNVTATEESENENIESIEEKSEDENTESIEEENEVHQ"
XX
SQ   Sequence 4540 BP; 1575 A; 789 C; 979 G; 1197 T; 0 other;
     ggattcgaca tcagaagtgg gatctggcca ccagccttca gcactagatg gaccatggcg        60
     tgccctgatg gagttacaaa ataaaaattt aattgaacta gtgaaagcca taaaaacaac       120
     tgtacctgat gcagggcaga acaaaactgt gcaactaccc aaattcaacc cagacaaacc       180
     aggcgccaac gcatcatcgt ggtgcacaac ggtggaagtg attttacaag aaaacacatt       240
     gagaagcagt gcattggtta tggccttgag ttcggcttta gaaggaagtg cttcgcaatg       300
     gctttcgcaa gtgtgctatg ctgaaattac ttggcctgag tttaaagaat tgtttataca       360
     acgcttcgac actatagaaa caccagccgc tatgtttctt aatatgctat caaatcgacc       420
     gactgatggc gagagtctgg ctgttcatgc aagtcgcatg gttaccgaac taacaacgaa       480
     atggcgccaa atggataacg aagagattgc tgtgtctgtg acccttgcgc tgctggcaag       540
     cttcgatcac cgattgcagc gtttaagttt cacatcaaat gttcgaaccg gagtcgatct       600
     acagtccgaa ttaaaagcat tcacttttat taaaaggaaa agcggcgcta tggagcatca       660
     ggctgaaact tattctaaac ggcaaaaaca atcaccgatg gagtgccatt tctgcggaaa       720
     agtgggccat aaaatggctg aatgcagatt caggaaacaa cagaatcaat tcgcgactga       780
     taaaacccaa catggcaggc atgatgttca tcaccgtgga aaatcaaatt taacttgcta       840
     caagtgcgga gaattgggtc acatatccac ccaatgtaca aagaaggaag ctgataggaa       900
     caaggcattc aatcgggaga agcgagtgga acagtgcagt gttgcagtac caaagggatg       960
     tctgaaccat agaggccaaa tttttgaaat caccttcgat tcgggatcgg aatgctcgtt      1020
     gataaaagaa aagctaagta ccaaattttc tggtaaaaga ttcaataata ttgttatgtt      1080
     aaaaggtatc ggcagcaatg gaatatgtag tactgtacaa atattaagca atgtaaaaat      1140
     tgacgattat tgtattgaaa ttttgtttca cgttataggc gatgatgata tgcagaacga      1200
     cattgtaatt ggccgtgaga tattaaatca gggtcttgat attgtcattt catcaaacca      1260
     atttaggatc tcaaagacca aagtagttaa tttgtgtacc ggcaatgagc cagccgatat      1320
     tgatactgag cttgagggac aagataaaat aaaactacat tcactgttgg caaagtactc      1380
     aaattcattt ataactggga tcccaagtac taaagtcaga attggcgaaa tgaaaattag      1440
     gttgattgat ccaacaaaaa ccgtacagag aaggccatat cgtttaagtc catgcgagcg      1500
     agatttggtt agggacaaaa ttaatgaact gctaaaatgc aatataatta ggccaagctg      1560
     ctcaccttat gcaagcccta tattgttagt gaagaaaaaa aatggtacgg acagactttg      1620
     tgttgacttt agagagctga attcaaatac ggtcgctgat aaataccctt taccacttat      1680
     acaagatcaa atcaataggc ttgggggagt taattacttt acatgtctag acatggccag      1740
     cggatattac caaattcctt tgcattcaga ttctatcgag tacacggcgt ttgtgactcc      1800
     ggatggtcaa tacgagttcc tgtccatgcc atttgggctc aaaaacgcac cttctgtttt      1860
     tcaacgatta gtaatacagg cgctagggga tctagcaaat tcctttgtca tcgtctatat      1920
     ggatgatatc atgatagccg cctcaacaaa atgcgaggcg ctagaaagat tacagatcgt      1980
     tctagatgtt ttgacaaagg ctgggttttc attcaatctt acaaagtgct cattcatgaa      2040
     aacatcggtt caatatttgg gttacaatat aagtgcgggt gagattcgtc caaacccaca      2100
     gaaagttgta gcgttgactg ctcttccgcc tccacagtca gtcacttcac ttagacaatt      2160
     cattgggcta gcatcctatt tccgacagtt tattaaggga ttttcacaat taatgaaacc      2220
     gttatatttc ttaactgcag ataaaaacaa atttatttgg aaaacagagc atgaacagat      2280
     acggaaaaag gtcattgcca ctcttaccga caaaccagtc cttgttattt ttgaccctta      2340
     ttatccaatc gaattgcaca cagacgccag ttgcagtggg tacggtgcaa ttttattaca      2400
     caaaattaat aacaaacccc aggtaataga atactatagc aaaactactt caccggcaga      2460
     atcaagatat cactcgtacg agttggaaac cttagctgtc gtgaacgcca ttaagcattt      2520
     tcgacattat ttgctgggca ggaacttttt agtttatact gactgcaact cgcttaaggc      2580
     ggcgagaaat aaacgagatt taacccccag agcacagcgt tggtggggtt atttgcagca      2640
     attcacattc gatattcagt atagagaagg gaaaaggatg gcacacgttg actttttatc      2700
     gagaaatccc ctttcaaaaa agtctactac aaccgcaaaa atagtcgaag agaaaagagt      2760
     aaatttagct gaaatttcaa gcaactggct tattgctgaa caacgtcgag atgtggacat      2820
     agtcgaaatt gttaaacatt ttaaaaactc ttctctgcct gaagatattg cgaaaaccta      2880
     tgaattaagg gcagaagttc ttcatcgaaa gatacaaaga aatgggagaa cacgttgctt      2940
     accagtggtg ccacgagctt tcagatggtc tgtcataaat caagtgcatg agtccataat      3000
     gcatctaggt ttcgaaaaga cattagataa aacttacgat ttctactggt ttgacaatat      3060
     gtcaaaatac gtaaaaaaat ttgtcgacaa ctgcatcact tgcaaaatgt caaaatccac      3120
     ttcaggaaaa atacaggcgg aattacatcc aataccaaaa gtcactattc cttggcacac      3180
     tatccacatc gatatcacag gaaaattaag tggcaagagt gatcagaagg agtatgttat      3240
     tgttcagata gacgcgttta ccaaatatgt ctatcttagt catagtctta aattagacag      3300
     tgagagttgt ataagggccg ttcaatctgc cgtttcattg tttggagtac caaaccgaat      3360
     aatagctgac cagggaaggt gttttacagg cgcaaagttc agtcaatttt gttcagatca      3420
     aaaaataaaa ttgcatttga tagccactgg tgcaagtcga gctaatggcc aagtggagcg      3480
     aactatgagc acgttgaaga atatgttaac ggcggttgaa acgggaacac agtcttggca      3540
     ggatgtgttg ggagaggtgc agttggcaat caattgtaca accaatcgca ctacgaaagc      3600
     aagtccttta gaaatgttat tgggaaaggt agcacgccca ttgggattac ttccacctag      3660
     tgatatagaa aatgttattg atttgccaaa cgtaagagcg caagctgcaa agaatgtatt      3720
     agccagtgca gcttatgata aagaacgatt tgatagaaat aaggcaaaaa taaaaaggca      3780
     caaaattgga gatttcgtat tacttaagag cgaagaaaga caccagacca agctaagtcc      3840
     aaaatttagg gggccttttg aaatagtaaa agttctagaa ggtgacaggt acattttaaa      3900
     gtctttaact agtaaaagaa attataaata tgcacatgag gatttaagaa aattaccaga      3960
     ggggcaagtg cccgaagagc taaatgtgta cgatgattat aataatttag atgaaagaaa      4020
     cgtaaccgct acagaagaga gtgaaaatga aaatattgag agtattgaag aaaagagtga      4080
     agatgaaaat actgagagta ttgaagaaga aaatgaagta caccaataag ggtgacaaag      4140
     ttgtactgct ggccaatgaa aatggcagag tactgagtcc ataaaatata atgcaagcac      4200
     aagtgcaaaa catattgttt gttttgatca tggcgtgtgg ggtatttgat tatgcgacta      4260
     taagagtgaa taatgaagaa gaatggatta tataaaagaa gaagtaaaac aaagaaatga      4320
     aaagaaagaa agaaaaagtt gaattgaatt gataaaaaaa attatagtta tggaactgaa      4380
     tactgttttg tgaaactgtc aatacgataa tttgttatga gttaagataa gaaaattgga      4440
     tgaaactatt taatgttcag tctaataaag taagaaaatt cgaatgctgc tattttctac      4500
     acgaggtcgt gttagggtca ggatggccgt gtcggcgcat                            4540
//
ID   Gypsy-38_DAn-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_DAn_;
KW   Gypsy-38_DAn-LTR; Gypsy-38_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-344
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 310-310 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 344 BP; 79 A; 70 C; 110 G; 85 T; 0 other;
     tgagactgcg tggctgcgga tgtatgtgtg tgtgtgtgtg tgcgaataca cattttcggg        60
     tatttcacca gagtgatagt attgcatcag cctcttgcgc tgtgagtgtg tggttgccag       120
     gcaaccgttg gcaggcgacc gttgctggga ttttgtcgct ttacaaagta ccgttgtagc       180
     gaggcgacag cgttgtgtcg ctgtcgccga tcgaggtttg gtagtatgca cagtaggtag       240
     acagttggac gcaggcagtt gcgtaccaga actggaagag tgtgcagggc tgaaactcga       300
     tgcgccacaa tggagaacag caacaacaac aacaacaacg gtca                        344
//
ID   Gypsy-38_DEl-I repbase;    DNA;    INV; 4820 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4820
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 479-479 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1946..2230,2234..2557,2383..2781,3030..3422,
FT                 3322..4125,4043..4546)
FT                 /product="Gypsy-38_DEl-I_1p"
FT                 /note="gag and retropepsin."
FT                 /translation="PRXQHATGGLRQXLEMXGTSSRQKETTEIVIKVLQRN
FT                 QHGMEHRKNLSRXTPTRWXXDSKKRNXTRVRNXGGAAQDHGISTSKNGRNK
FT                 QVGTSEHKCSTSHPLQDGQQIKKLTRKVQGAPGALEPAAASGNYTRGCGLG
FT                 RPSRSKDRPGQHQSGDRHQPEKAYHQTPRRRHGRHMATKKDNGTKNDEYKE
FT                 KIAQTTDQYPPNQGPTRAAPVGRQAPAREGISSNTPTTTRQTHGNEEGQRN
FT                 KERRVQGKNSPNHRSISPKPMTTTGTKRHQLDFQRPKTNWVTPRRLSTLEY
FT                 PCVKPIDFRRIQTRSGSRSNXHLSNFLPEVTFPAPDPEXIRNKQISVSNPG
FT                 HGELYRLPKQGRYNGARANERQLTVTSNRNTKDRLPSSSTQHKINTMADNL
FT                 TRGWISNTNKAQLEAYLIEFKIKPDVLCEDLRRQMSEFIKNGNHSEGTIKR
FT                 LPFFFYPTERKTSTQTHKDRRERTATTARELSNAFHSSSTLPKEKPVPKPT
FT                 RIDGNKVTTMGVIRSWGEEYEGTGDLAEFISRTEELAEAYGIELDHAAGAM
FT                 VLLLRGCALDWWNTHPTPMPSWSTFRKEILEYYRPADHEEKAMESITRTYQ
FT                 GEDEPAKQYTRELRKIMRFTTLTEEKKLEWVYRKKRVEFKRYAKRGECRTL
FT                 AKYLRLAEEFEALQSQEHTTQQKTQQAETHWGHQQPPGIYWRHADRMEHVR
FT                 FTAVAGMKRRETAEAHGIRTGTQGTHHSRNANIIQNDGKRQRPMGSERAPR
FT                 AHTTPATQISFNSRRLLAQVNIGNTGARGAIDTGATRSFICRELANRIARH
FT                 GKRKRVTEANRLADGTNRTVTEALEVPIQLGNQTSTTTLLVLDEVIGDLLL
FT                 GVDILEQCNSTLECGGITAIIKQNKRNLRTNKKHKRHGIGSLATGDLTEA"
XX
SQ   Sequence 4820 BP; 1694 A; 1194 C; 1119 G; 783 T; 30 other;
     gtactacaga ccagcgaacc acgaggaaaa agcaatggaa gggtgacgac gagccagcga        60
     agcaatatac gcgcgaactc cgcaaaatca tgagatttac tacgcttaca gaagagaaaa       120
     aactggaatg ggtctaccga aaaaaacgag tagagttcaa acggtatgct aaacgtggag       180
     aatgtcgaac actagcgaaa tatctccgat tagccgagga attcgaggcc ctccaatcac       240
     aggaacacac aagacagcaa aaaacacaac aagcggaaac gcactggggt caccagcaac       300
     cacctttaat ttactgcaga cacgcggaca agatggaaca cgtacgattt actgctgtaa       360
     ccggaatgaa acgacgggaa acgacagagg cccatgggat cagaacgggc acccagggaa       420
     cacaccactc ccgcaacgca aatatcattc aatagccgac gcttgctcgc acaagtcaat       480
     ataggcaaca cagcagctcg cggtgccatt gacactggag ccacacggag tttcatctgc       540
     agagaactag caaacagaat atccagacac gggaaaagaa agcgagtaac cgaagccaat       600
     agactagcag acggaacaaa ccggacagtc acagaggcac tggaattacc aatacagctt       660
     gggaaacaag caagcacaac gacactgcta gtcctcgacg aggtaatcgg agacctgcta       720
     gtgggagtag tattagaata gtgtaactcc acattagaat gcggaagcat cacagcaata       780
     atctaaaaga acaagagaaa cctactcacg aataaaaagc acaagagaca ttgcatcgga       840
     tcactagcaa caggcgattt aacagaggca taggtccaag aaaccctcaa aagggaattg       900
     gagatgatgg gccaaatcca ggaagtacgt cacaatcttt atgaagcatg accacccaat       960
     caatcataga taaataagtg gacgaactct tggcacaaga cctcatagca cccccgcatt      1020
     ccgcttacag ctcgtcgaaa cgaaaaccaa ggaatggaga ctttgcatag actacaggca      1080
     gcggaacgag cactcagaac gagatgcata cccagtacgt cgaatggatc acatactcaa      1140
     ccagctacgg gaggcaaaat atataagcac actagatcta taaagtggct actggcagat      1200
     actgatggac gaaaatatta aacagtacac cgcttttacc gtaccaggat gcgggctgtt      1260
     tcaatggaaa gtattgccgt ttggatwgma tacagccccg tcmctttcca aagagccctc      1320
     kacttastca tcggaccaga gatggaacca ttcgcattcg catacctgga tgacatagtg      1380
     gtcatcggac gaacgaaacg tggacacctg gagaaactgc aagaagtgat gagacgactt      1440
     cgcaaggcaa acctaaggat caacacggag aaatgccact tcttcaaagw agwgctaaaa      1500
     tagcttggtc acttagtcaa cgcaagaggc acacacaccg atccggaaaa aatagccgma      1560
     atcctcaacc aaatgccaag cccacagacg acgaagmaag wacacagctt cctgggggta      1620
     gcctcatggt acagaaggtt cgttcctaac ttcacagaac tgscgawacc gctatacawc      1680
     cwggtcaaga agggtacgaa gtttaaatgg aacaaggaga cagaggggca accaaaaacc      1740
     tgaagaaagc tctawcaaaa gcgccagtcc tcgagtgccc ttagtttggc aagaaaaaat      1800
     gaggatttac tagaaagata taacttcgtc gccaacgcta aaagactgca caataacagg      1860
     cggcaagaaa aatgcttata caaatgacaa aggcaccttg ggaaaccctc tgcatagact      1920
     tcgttggccc actaccgata tctagccacg gmaacaacat gctactggtg gtcttcgaca      1980
     akttctcgaa atgkgtggaa ctagcagccg tcagaaagaa acgacggaaa tcgtgataaa      2040
     ggtactacag agaaatcaac acggtatgga gcaccgaaag aacttatctc ggwcaacgcc      2100
     waccaggtgg aakcmcgact ccaaaaagmg aaacmacacc cgggtacgga acakkggagg      2160
     ggcagcacaa gaccatggaa tctcgacttc aaaaaatggt agaaacaagc aagttggcac      2220
     atcggaacat tgaaaatgca gcacaagtca tccgttacag gatggacaac aaattaaaaa      2280
     actgactcgc aaagtacagg gagcgcctgg agcgcttgaa ccagcagcgg cgtcgggtaa      2340
     ttacactcga ggctgtggac ttggcaggcc cagcaggagt aaggaccgac cagggcagca      2400
     ccagtcggga gacaggcacc agcccgagaa ggcatatcat caaacacccc gacgacgaca      2460
     cggcagacac atggcaacga agaaggacaa cggaacaaag aacgacgagt acaaggaaaa      2520
     aatagcccaa accaccgatc aatatccccc aaaccaatga caacaaccgg gacaaagcgc      2580
     caccaactcg atttccagcg cccgaagaca aattgggtga ccccaagacg cctctccaca      2640
     ctagagtatc cttgcgtgaa accgatagac tttcggagaa tacagacgag gagtgggagc      2700
     cgaagcaacs ggcatctcag taatttcctc ccagaagtca cctttccggc tccmgacccg      2760
     gaaamtatac ggaacaagca gtgagcaacc gaccattccg cagcgcttac gtaactaagc      2820
     atgcagttac acatctcggc ctttccgtag caccgacgcg acaaacagta cttagctatg      2880
     cacttccgca gcgccgacgc ctcagaggca cctaaaaatc gacattatac tttttgtttt      2940
     atccaaccgt agaaaatata agtatattgc gttctttctc tgtgtcatta ttggggaaag      3000
     gaaggtaaac cgatctatag ggaaaataaa tttctgtctc gaaccctggc cacggcgagc      3060
     tataccgcct accgaaacag ggtcgttaca atggcgcccg agcaaatgaa agacaattga      3120
     cagtaacctc gaataggaac accaaagatc gtttaccctc ttcctcaaca caacacaaaa      3180
     taaacacaat ggcagacaat ttaactcgag gctggataag caacaccaat aaagcccaac      3240
     tggaagccta tctgatagaa ttcaaaatca agccagacgt actgtgcgag gatttgcgga      3300
     ggcagatgtc ggagttcata aagaacggca accacagcga gggaactatc aaacgccttc      3360
     cattcttctt ctaccctacc gaaagaaaaa ccagtaccca aacccacaag gatcgacggg      3420
     aataaagtga ccacaatggg agtaatacga agttggggag aagaatacga aggcactggc      3480
     gacttggcag agttcataag cagaacggag gaattagccg aggcttacgg gatagaactc      3540
     gatcacgcag cgggagccat ggtattatta ctcagaggct gtgccttgga ctggtggaac      3600
     acccacccaa ccccaatgcc atcatggagt actttcagaa aagaaatcct ggagtactac      3660
     agaccagcgg accacgagga aaaagcaatg gaaagcatca cacgtacgta ccagggtgag      3720
     gacgagccag cgaagcaata tacgcgcgaa ctccgcaaaa tcatgagatt cactacgctt      3780
     acagaagaga aaaaactgga gtgggtctac cgaaaaaaac gagtagagtt caaacggtat      3840
     gctaaacgtg gagaatgtcg aacactagcg aaatatctcc gattagccga ggaattcgag      3900
     gccctccaat cacaggaaca cacaacacag caaaaaacac aacaagcgga aacgcactgg      3960
     ggtcaccagc aaccacctgg aatttactgg agacacgcgg acaggatgga acacgtacga      4020
     tttactgctg tcgccggaat gaaacgacgg gaaacggcag aggcccatgg gatcagaacg      4080
     ggcacccagg gcacacacca ctcccgcaac gcaaatatca ttcaatagcc gacgcttgct      4140
     cgcacaagtc aatataggca acacaggagc tcgcggtgcc attgacactg gagccacacg      4200
     gagtttcatc tgcagagaac tagcaaacag aatagccaga cacgggaaaa gaaagcgagt      4260
     aaccgaagcc aatagactag cagacggaac aaaccggaca gtcacagagg cactggaagt      4320
     accaatacag cttgggaacc aaacaagcac aacgacactg ctagtcctcg acgaggtaat      4380
     cggagacctg ctactgggag tagatatctt agaacagtgt aactccacat tagaatgcgg      4440
     aggcatcaca gcaataatca aacagaacaa gagaaaccta cgcacgaata aaaagcacaa      4500
     gagacatggc atcggatcac tagcaacagg cgatttaaca gaggcatagg tccaagaaac      4560
     cctcaaaagg gaattggaga tgatgggcca aatccaggaa gtacgtcaca ttgccaacca      4620
     aaaaatcttt atgaagcatg accgcccaat caaacagatt cgagataccc tcgaaacccg      4680
     acaacgcaat caatcataga taaataagtg gacgaactct tggcacaaga cctcatagca      4740
     cccccgcatt ccgcttacag ctcgtagaaa agaaaaccaa ggaatkgaga ctatgcgtag      4800
     actacaggca gctgaacgag                                                  4820
//
ID   Gypsy-38_DWil-I repbase;    DNA;    INV; 4976 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_DWil_;
KW   Gypsy-38_DWil-LTR; Gypsy-38_DWil-I.
XX
NM   Gypsy-38_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4976
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-4976
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(312..4607,4607..4975)
FT                 /product="Gypsy-38_DWil-I_1p"
FT                 /translation="MAKLADFGAVNEKLRTEKRQNIALLHKYVFERDGDRN
FT                 NRKRLREFQGYDYERTDKEYAIKMSYIADELSDNDLAVICNMLHLHHNEND
FT                 LPNFIFCNLQKGNLLRDADFNAANDEVSDESENEEDDNNDVDDNDAQEERN
FT                 KNNPSVASVPIQNVPIQSVPRFALNFHDVEDSIRSFNGEDTLSIEVWINEF
FT                 EDLAKLMYWNDLQMFIFAKRSLKGLAKLFVASERGISNWLKLKKALLNEFK
FT                 STTNSAQLHKMMADRKIRKNENLQEYFLLMKELSTRGNIEESALIQYVIDG
FT                 IDDSGTNKSMLYGAKNIKDFKDKLKCYEIMREKSKSENKNVLSFNKQFQKS
FT                 DRNSQPKQVRSVNKEIKCFNCGLKGHTAADCDDKNKGKKCFECNMFGHIGK
FT                 DCPKKSEKREVSNTRKLNTSTSRMYKEITIDGLKMNAFIDTGSKYNLMSEK
FT                 IYKRIKQSKLCECNKFLIGFGNGDAVKAMGSIEKLFVIDGQEFKSVFLVIE
FT                 AQFLDEDLLLGEEFCKIAEVKINRDGIIVRKSDSIELETEISVLMKINASN
FT                 VNEIDLNIEANASNSAKYEVRELIKNYKPVNAKSTNVKMRIVVNDDTPIYS
FT                 RPRRIGYNERSVVDQQVDEWLKEGIVEHSESEYSSPVVLVKKRDGSPRLCI
FT                 DYRRINKVILRDHFPLPLIEDQLDRLVSAKIFSTIDLKNGFFHVDVEEESR
FT                 KYTSFVTHNGQYQFLKVPFGLANSPSVFQRHINAIFRELTRKNIAIPYVDD
FT                 IIIPAKDEDEAISNLKEVLKQCENYGLMINLKKCSFLKKRVEFLGHEIEDQ
FT                 KICISEEKTKAVTKFPQPTNQKQLQSFLGLVGYFRKFIKNFGLIAKPLTNL
FT                 LKQNAKFHFNDFEIESFNRLKILITERPVLKIFNFNHETELHTDASIDGFG
FT                 AVLLQVSPEDGQLHPVYYMSRITTDAQRKFXSYELEILAVIEALNKFRVYL
FT                 LGIRFKLVSDCNAFTKTMEKRDVGTRVARWILMLQEFDFEVEHREGTRIRH
FT                 ADALSRNPVMLITXGSAISKLKYLQEQDDEIKAIIDILSEKASHNDYFMKA
FT                 GLLCKLVNDVELIVVPISFQRDLIKEAHERGHFSVRKTKDIIAKEYYIPKL
FT                 EAKVERHIRCCIPCIISNRKQGKKEGLLNPLPKEEEPLQTFHIDFLGPLES
FT                 TDKRYKHILAVIDAFTKYCWLYTTKTTSAQEVISRLQAQSLTFGNPVQIIT
FT                 DRGSAFTSEDFKEYCRSENILHHAVTTGLPRANGQVERLNAIIISVLSKLS
FT                 VDDPSKWYKFVGRVQQTINSTHCRSTNITPFELLVGVKMRTKFDIQLKQII
FT                 DEEMIAMFNEKRDDLRKHAKQQIINLQEENKNTYNLRRKHASIYKEGDLVA
FT                 IKRTQFGGGLKLKPKYLGPYRVTKVKSKDTYDVTKDAHFVDGPKNTTTCAE
FT                 YMKKWIPYVDDDEDIADNLRKLTKGQRTMLLTMINTMMKMMITTTLMMMTT
FT                 PKMTIMMITTMIMRMTITKMMTTMLKTNDDHHEGDAENHEFNDDTSNDDTD
FT                 DSKTRVMKTTKMKMTPKPMMTTLKTTTTHLGQMHLRMAD"
XX
SQ   Sequence 4976 BP; 1867 A; 848 C; 1003 G; 1254 T; 4 other;
     aatatggggg ctcaacctta cttaaacgaa gaaaaatata acggttcaac mtaactaaaa        60
     aatgtgaagt cttaagctaa atgatgtgaa aaaatagcaa gaagtgctaa aacgacgaat       120
     aagatacgag gacaaattta tgtaaaagta ttaattaaag aaaattaatt aaagtgagat       180
     ctgaaagaca aaaaacaaaa gtgttttaac gcagttccaa gaatttgtca aacgtttaam       240
     attgaagtaa aatacacaca tacacacaca tataagagtg acgctaccaa tacagacata       300
     caaaagtgaa catggcaaag ctcgcagact tcggtgctgt aaatgaaaaa ctgcgtacgg       360
     aaaagagaca gaacattgca ttgcttcaca aatatgtatt cgaaagggat ggagacagaa       420
     ataacagaaa acggttacgc gaatttcaag gttacgacta cgaaagaaca gataaagagt       480
     atgcaattaa aatgtcatat attgccgatg aactttctga taatgactta gctgtaatat       540
     gtaatatgct acatttacac cataatgaga acgacctgcc taactttata ttttgtaatt       600
     tgcaaaaggg aaatttactg cgtgatgctg attttaatgc cgcgaatgac gaagtctctg       660
     acgaaagcga aaacgaagaa gatgataata atgacgttga cgataatgat gcacaagaag       720
     aaagaaacaa aaacaaccct tcagtagcca gtgttccaat tcaaaacgtt ccgattcaaa       780
     gtgttccaag atttgcttta aattttcatg atgtcgaaga ctcgattaga tcgtttaatg       840
     gtgaagatac cctttccatt gaagtgtgga ttaatgaatt cgaagatctt gcaaagctaa       900
     tgtattggaa tgatttacaa atgtttatat tcgcaaaacg gtcattaaaa ggattagcaa       960
     agctttttgt tgcgagcgaa cgaggtattt ctaactggtt gaaattaaaa aaggcgctac      1020
     tcaatgaatt taaatcgacg acaaacagtg cccaattgca taaaatgatg gcagatcgga      1080
     aaattagaaa gaacgagaat ttacaagaat attttttgct gatgaaagag ttatccacgc      1140
     gaggaaatat cgaagagtct gcattgatcc agtatgttat tgatggtatt gacgacagtg      1200
     gtacgaacaa atcaatgttg tatggagcta aaaacataaa agactttaaa gacaaattga      1260
     aatgctacga aataatgcgg gagaaatcta agagtgagaa taagaatgta ctaagtttta      1320
     ataaacaatt ccagaaaagt gatcgcaatt ctcagccaaa gcaagttcga agtgtaaata      1380
     aagaaatcaa atgtttcaat tgtggtctta aaggtcatac agccgctgac tgtgacgata      1440
     aaaacaaagg taaaaagtgt tttgaatgca acatgtttgg ccatattggc aaagattgtc      1500
     ccaagaaatc ggaaaaacgc gaagtgagta atacacgaaa actaaacaca tcaacctcac      1560
     gtatgtataa agagataaca atcgacggtt taaagatgaa tgcttttatt gacactggaa      1620
     gtaaatacaa tcttatgtcc gaaaagattt ataaaagaat aaaacagtca aagctatgtg      1680
     agtgcaacaa atttttaatc gggttcggta atggcgacgc ggtcaaagcc atgggttcaa      1740
     tcgaaaaact attcgtaatt gacggtcaag aattcaaatc agtatttcta gtaatcgaag      1800
     cacaatttct tgatgaagac ttgctgttag gcgaagaatt ttgtaaaatt gcggaagtaa      1860
     aaataaatcg tgacgggata attgtaagaa agagtgacag tatcgagctt gaaacagaaa      1920
     tttcggtgtt gatgaaaata aatgcatcaa atgttaacga gattgattta aatattgaag      1980
     ctaatgcaag caattccgca aagtatgaag tacgcgaact gataaaaaac tataaacccg      2040
     taaacgcaaa gtcgacaaac gtaaaaatgc gaatcgtagt taatgacgat accccaatct      2100
     actcgcgtcc gcgtagaatc ggttataacg aacgttccgt agtagaccaa caagttgatg      2160
     aatggttaaa agaaggtata gtcgagcact ctgagtcaga gtacagtagc cccgtagtcc      2220
     tggtaaaaaa acgagatggt tctccaagac tatgtatcga ctatagaagg attaacaagg      2280
     taatattacg agaccatttt cctttaccct taatcgaaga ccaactggac agattggtaa      2340
     gtgcgaagat attcagcact attgacctga aaaatggatt cttccatgtt gatgtcgagg      2400
     aggaaagccg aaaatataca tcttttgtaa cccacaacgg gcaataccag tttctgaagg      2460
     taccatttgg actagcgaat tctcctagtg tttttcaaag acacatcaat gctatatttc      2520
     gagagctgac tcgtaaaaat atcgcgattc catatgtaga tgacatcatt attccagcta      2580
     aagatgaaga cgaggccata tcaaatctca aagaagtcct gaaacagtgt gaaaattacg      2640
     gcctgatgat caacctaaaa aaatgcagtt ttttgaagaa aagagttgag tttttagggc      2700
     acgaaatcga agaccaaaag atatgtattt ctgaagagaa aaccaaagct gtaactaaat      2760
     ttccccagcc cacaaaccag aagcaacttc aaagtttcct aggattggtt ggatacttta      2820
     gaaaatttat taaaaatttt ggattaatag ctaagcctct aacgaatcta ctaaaacaaa      2880
     atgctaaatt ccactttaat gattttgaaa tcgaatcatt caacaggtta aaaatattga      2940
     tcacagagag gcccgtatta aaaatcttta actttaacca tgagacggag ctccacaccg      3000
     atgcttcgat tgacgggttt ggagcagtac ttttacaagt ctcacctgaa gatggacaac      3060
     tacaccccgt atattatatg agcaggatca caacggacgc acaaaggaag tttwcaagct      3120
     acgaactgga gatactagcc gttattgaag ctctcaacaa attccgagtc tacttacttg      3180
     gcatccgctt caaactcgta agcgactgca atgctttcac caaaaccatg gaaaaacgag      3240
     acgttggcac acgagtggcc cgatggatac taatgctgca agaatttgac ttcgaggtgg      3300
     agcatcgaga aggaacacgt attcggcatg ctgacgcctt aagccgaaat ccagtaatgt      3360
     taatcaccga kggaagcgca atcagcaaac taaagtatct tcaagaacaa gacgacgaga      3420
     taaaagcaat tatcgatatt ctatctgaaa aagcatcaca caatgattac tttatgaaag      3480
     ccggtctctt atgtaagctg gtgaacgacg ttgaactaat agttgtacct atatcatttc      3540
     agcgtgatct tatcaaagaa gctcatgaga gaggacattt ttctgttagg aagacgaaag      3600
     acataattgc gaaagaatat tatataccga aacttgaggc caaagttgaa cgacatatta      3660
     ggtgctgcat tccgtgtatt atctcaaacc gcaaacaagg aaaaaaggag ggactgttaa      3720
     atccattgcc taaggaagaa gaaccactgc aaacattcca cattgatttt ttgggtccgc      3780
     ttgaatctac tgacaagaga tacaaacaca tcctagctgt tatagatgca ttcaccaaat      3840
     actgctggtt atatacgact aagacgacat ccgcccaaga agttatatcg agattgcaag      3900
     cacaaagtct cacatttgga aacccagtcc agattattac agatagagga tctgctttca      3960
     catcagaaga ctttaaggag tattgccgtt cagagaatat acttcaccac gctgttacta      4020
     ccggactgcc tagagcaaat gggcaagtag agagacttaa tgctattatt atatctgttt      4080
     tatccaagct ttctgttgat gacccgagca aatggtacaa gtttgttgga agagttcagc      4140
     aaacaataaa ttcaactcac tgtagaagca caaatattac gccgttcgag ttattagttg      4200
     gagtcaaaat gcgtacgaag tttgatatcc aattgaagca aattattgat gaggaaatga      4260
     tagctatgtt taacgaaaaa agagatgacc taaggaagca tgcgaagcag caaatcataa      4320
     atctacaaga ggaaaacaag aacacttata atctacgacg aaaacatgca tcaatttata      4380
     aagaaggcga tcttgttgca attaaacgta ctcaattcgg aggtggactg aagttaaagc      4440
     caaagtattt aggtccttat cgagtaacta aagtcaaatc aaaggatact tatgatgtca      4500
     ctaaagatgc acactttgta gatggtccga aaaatacgac tacttgcgcc gaatatatga      4560
     agaaatggat cccttatgta gacgatgatg aagatattgc tgataactaa gaaaacttac      4620
     gaaagggcag aggacaatgc tgttaacgat gataaataca atgatgaaaa tgatgattac      4680
     aacgacgtta atgatgatga ctactccgaa gatgacgata atgatgatta caacgatgat      4740
     aatgagaatg acgattacga agatgatgac gacgatgctg aaaaccaatg atgaccacca      4800
     tgaaggcgat gcggaaaacc acgaatttaa tgatgacacc tctaacgacg atacagacga      4860
     ctccaaaact agagtgatga agacgacgaa aatgaagatg actccaaagc cgatgatgac      4920
     gactttgaag acgacgacga cgcatttggg gcaaatgcat ttaaggatgg ccgatc          4976
//
ID   Gypsy-38_DWil-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_DWil_;
KW   Gypsy-38_DWil-LTR; Gypsy-38_DWil-I.
XX
NM   Gypsy-38_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-268
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-268
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 268 BP; 92 A; 48 C; 62 G; 66 T; 0 other;
     tgtggggatg gtatggtaac gctgtaaggc cagacctact cccgaagcag ctgatcgacg        60
     aggtggcaat gatagagaag acgaggtggc aaggcagagt tgaaaacgag gagtctagag       120
     agaacgacga acgacgaacg acgtgtgtgt aaaatgaatc aatacataat tttgtcaaaa       180
     cctattgttc cgttattaat tacctaattt aataaataat ctacttaata taacaactat       240
     tctaattctt gtgggcacca atcccaca                                          268
//
ID   Gypsy-38_HeAr-I repbase;    DNA;    INV; 4280 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4280
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5585-5585 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           102..3998
FT                 /product="Gypsy-38_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTDGGVAVFGLKPPSPLTTLTAEAYKRWMKVFEIYR
FT                 QAAGIVKNEESVQVAVLLHCMGEQSVEIFSTLGXPEKPTYKAVVKAFDDYF
FT                 VPIKNECVSSHVFFTRAQAQGETFDAYCTELKKLAVDCNFGNMKDRMLRDR
FT                 IVAGITDNRVRDRLLRERELNLDKCILICRTAEMAAEQVTKFAGSETKQLE
FT                 INRIKEYKKQEGRKHECSRCGWEHAERKCPAEGKKCMKCQKIGHFAKKCRS
FT                 AEYRRSTSTQVRRVEVESEDEEDEFLLGSVRVCSVNKMSWNVKVQFLNSIN
FT                 QNSLYFKLDTGAQCNVISIKDCKRFKITDIQPSNLKLLNYDGARLSTVGKI
FT                 SVECKIKDVISTLEFQVCRNESEPILGLPSIINLNLLQRNIDSITMENILT
FT                 KNKDLFTGIGKVKDYEYTIKLKPNAIGKVEPCRHVPFKLLPKLKEELEFME
FT                 SNGIISKIETATEYVNSLVVVGKQDGSIRVCLDPQHLNEQILREQFLLPTL
FT                 EEITSKLIGSKYFSTFDASRAFWQVMLCKDSRELTTFNTPFGRYCFNRLPY
FT                 GLNSSPEVFHRLFTKIFGDIPGVEIFIDDLLIHAETKERHDEILTKVMSRA
FT                 REFNIRFKKEKSQICVQEVKYLGHILSSEGVKLDPDRVETITKLRQPINKT
FT                 ELLRFLGMTNYVSRFIKNYSEITSPLRQLLKKDVPFIWNNTVQSAYNNLKR
FT                 ILCEPPVLSYFDINKQMVLSVDASKDGLGAVLLQDNKPIAYGSRSLSNTEQ
FT                 MYSQIEKECLAIVFGCKKFYQYLYGQEFTVETDHKPLISIFAKPMNKCPPR
FT                 LQRMRFDLQKHKCSIVYKPGKQLVIADHLSRTYLPSMQTSDKQIEAHVAVV
FT                 FTKFKITDQKLKLMIEKTAEDLELQSVLKYVRDGWPNNKCEVSSLAKVYFS
FT                 YRDELSEYQGLLLKGCQIVIPMYYRQEMLNRIHSAHLGIVKCKSLARSTMY
FT                 WPTMNKELEDIITSCDTCKKFQNANRSEPMVCKEVPEKPWQILATDIFFLK
FT                 GVPYLLVVDSFSKYVEVNKLKDLTTNCTIKALKENFARHGVPEVLYSDPGT
FT                 QFTSIEFKNFAQSWYFYHKLSSPKYHQSNGLAERHIQTVKKMFKKLTEENR
FT                 DIYEGLLIYRNTPVSETGLTPAELLFNRKVNSTIPKFHNQLQNKDRHTYMK
FT                 ELKSRQLIQQKYYDRNKSYLPGVEEGQVVKIKEENCAGPHRSGVIVGQGLG
FT                 PRSVKIKTEQGNVIQRNRKDVIVGGKLHERLEDNVIEDSLCENTSNDLDNN
FT                 NSQSNLGVSSDNFVKSPMKTRSGRRVILPHYMKDYVNT"
XX
SQ   Sequence 4280 BP; 1568 A; 571 C; 920 G; 1214 T; 7 other;
     tggcgctgcg gaatwaaaaa atgttwacka caagaattst gtgctgataa taacagcgaa        60
     attaaagcac caagaagtta ttaaaggaag aaawttgcaa gatgtcgacg gatggcggtg       120
     tggcggtgtt cggattaaaa cccccttcgc cattgaccac gttaaccgct gaagcatata       180
     agaggtggat gaaggtcttc gagatatatc gscaggccgc cggcatcgtt aaaaatgagg       240
     agtccgtcca agtggcagtg ctactacact gcatggggga gcagagtgtt gaaattttta       300
     gtacactggg cktgcctgaa aagccaacgt acaaggcggt ggtcaaggcg tttgatgatt       360
     acttcgtgcc aataaaaaat gaatgtgtgt cttcgcatgt attttttact agagcccaag       420
     cgcagggcga gacgtttgac gcctactgca ctgagttgaa gaaactggcc gtggactgca       480
     actttgggaa catgaaagac cgtatgctac gggataggat tgtagcagga ataaccgaca       540
     atagagtgag ggatcggctg ttgcgcgaaa gagaacttaa tttagataaa tgtattttga       600
     tatgtagaac tgcagaaatg gcagctgaac aagtaacaaa atttgcgggt tcggaaacaa       660
     agcaactgga aattaatcgg ataaaagagt acaaaaagca agaaggcaga aaacatgagt       720
     gttcaagatg tggatgggaa catgcggaga ggaaatgtcc agcagaaggc aagaaatgca       780
     tgaagtgcca gaagataggc cattttgcga agaagtgtag aagtgctgaa tatagaaggt       840
     ctacaagcac ccaagtaaga agggtagaag ttgagagtga agatgaggaa gacgagttct       900
     tgctgggcag tgtacgtgtg tgttctgtca ataagatgtc ttggaatgta aaggtacaat       960
     ttcttaattc tataaaccag aatagcctat actttaagtt agatacgggt gctcagtgca      1020
     atgttatttc aattaaagac tgtaaaagat ttaaaatcac agatattcaa ccttcaaacc      1080
     taaaactgtt aaattatgat ggagcacgcc ttagtactgt tggaaaaatt tctgtagaat      1140
     gtaagattaa agatgttata agtacattgg aattccaagt ctgtagaaat gaatctgaac      1200
     caatattagg tttacctagc attataaatt taaatttatt acaaagaaac atagatagca      1260
     taacaatgga gaatatttta actaaaaata aggatttgtt tacaggaata ggaaaagtaa      1320
     aagactatga gtataccatt aaattgaaac caaacgccat agggaaagtg gagccatgta      1380
     gacatgtacc ttttaagttg ttaccaaaat tgaaggaaga attagaattt atggaaagta      1440
     atggtatcat atcgaagata gagacagcta cagaatatgt caactcactg gtagtagtag      1500
     gtaaacagga tggctcaatt cgagtatgtt tggatcctca acacctcaat gaacagattt      1560
     taagagaaca atttttatta cctacattgg aagaaattac aagtaaacta attggttcta      1620
     aatatttcag tacttttgat gcgagcagag cattctggca ggtaatgtta tgcaaagaca      1680
     gtagagagct tacaacattt aatactccat ttgggaggta ttgttttaac cgtttaccat      1740
     atgggttaaa ctcaagtcca gaagtattcc acagattatt cacaaaaata tttggagata      1800
     taccaggagt agagatattt atagacgatt tgttaataca cgcagaaaca aaagaaagac      1860
     atgatgagat cctcacaaaa gttatgagta gagcaagaga atttaatatt agattcaaga      1920
     aagaaaaaag tcagatatgt gtacaggaag tgaagtattt aggccacatc ttaagtagtg      1980
     aaggtgtaaa attagatccg gaccgtgtag aaacgattac taaattaagg caacctataa      2040
     ataagactga attattgaga tttttaggta tgaccaatta tgtttcaaga tttattaaga      2100
     attattcaga aataacatcg cccttaaggc aattgttgaa aaaggatgtt cccttcatat      2160
     ggaacaacac agtacagtct gcatacaata atttgaaaag aatattgtgt gaacctccgg      2220
     tattatctta ttttgatata aataaacaaa tggttttatc agtagatgca agtaaagatg      2280
     gattaggtgc agttttgctt caagataata aaccaatagc atatggctca aggtcattaa      2340
     gcaatacaga acagatgtat agccaaatcg aaaaagaatg cctagctatt gtatttggtt      2400
     gtaaaaaatt ttatcaatat ctgtatggcc aagagtttac tgtggaaacg gatcacaaac      2460
     cattaatatc aatatttgcc aaaccaatga acaaatgccc accccggttg caaagaatga      2520
     ggtttgattt acaaaaacat aaatgtagta ttgtgtataa acctggcaaa cagttagtca      2580
     tagcagatca cttgagtagg acttatttgc ctagcatgca gaccagtgat aaacagattg      2640
     aagctcatgt agcagtagtt tttaccaaat tcaagataac tgatcagaaa ttaaaattaa      2700
     tgattgagaa aactgcagaa gatttagaat tacagagtgt tcttaaatat gtaagggatg      2760
     ggtggccaaa taacaaatgt gaggtaagtt cattagctaa agtatatttt tcatatagag      2820
     atgagttaag tgaatatcaa gggttacttc taaagggttg tcaaattgta attccaatgt      2880
     actatagaca agaaatgtta aacagaatac atagtgcaca tttgggtata gtaaaatgta      2940
     agtcactagc cagaagtaca atgtattggc caaccatgaa taaagagtta gaagatataa      3000
     ttactagttg tgacacttgt aagaaatttc aaaatgctaa taggagtgag cccatggttt      3060
     gtaaggaagt gcctgaaaag ccatggcaaa ttttagcaac cgatattttc ttcttaaagg      3120
     gtgttccata tctattggta gtggactctt tcagtaaata tgttgaagtt aacaagttga      3180
     aagatttaac aactaattgt acgatcaagg ctttaaaaga aaattttgca aggcatgggg      3240
     taccagaggt actatattca gacccaggaa cgcagtttac tagcatagaa tttaaaaatt      3300
     ttgcacaatc ttggtatttt tatcataaat tgtcatctcc aaagtaccat caaagtaatg      3360
     gcctggctga acgacatatc caaacagtca aaaaaatgtt taagaagtta acagaagaaa      3420
     atagagatat ttatgaggga ttgttaattt atagaaatac accagtgtca gagacaggct      3480
     taactcctgc tgaattgttg tttaatagaa aagtaaacag tacaatacct aagttccaca      3540
     atcagttaca gaataaggat agacatacat atatgaaaga gttaaaaagt agacaattga      3600
     tacaacaaaa atattatgat agaaataagt cttatttacc aggtgttgag gagggtcagg      3660
     ttgttaaaat taaagaagaa aattgtgcag ggccacatag gagtggagtt attgtaggac      3720
     agggcttggg ccccaggtca gttaaaataa agacagaaca aggaaatgta atacaaagaa      3780
     ataggaagga tgtaatagtt ggtgggaagt tacatgagag gttagaggac aatgtaatag      3840
     aagatagttt gtgtgaaaat actagtaatg acttggataa taataattcc cagtccaatc      3900
     tcggtgtaag ttcagacaat tttgttaaat ctcctatgaa aactaggagt ggtagaaggg      3960
     tcatacttcc acattacatg aaggattatg ttaacactta gtgatttcaa gacaaaatat      4020
     agttttagat ttatagaata tattagttta tactgtattt gagatgcttg tgaactgtgt      4080
     ttgagttaaa cagttttgtg agtaaactat taagttgtat tgttctattg gttaagtaat      4140
     ggaaggatag gctggtatta agaaggagtt tgattgtctt gctaaaaatt gtcaattgta      4200
     aggtgttata atttaacttt tagttttatt tcttttaata gttaattgtt atttctcttt      4260
     agttataagg aaaggggaga                                                  4280
//
ID   Gypsy-38_HeAr-LTR repbase;    DNA;    INV; 135 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-135
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5615-5615 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 135 BP; 48 A; 25 C; 20 G; 42 T; 0 other;
     tgttataatg ttagataatc tgtgcaacat tatgtaacct gtgactgaca ggggtactct        60
     ctctctctgg aataaaagac tatggctgcc actctataaa taaatgtttt atttaaacac       120
     aataacaaca caaca                                                        135
//
ID   Gypsy-38_LMi-I repbase;    DNA;    INV; 4015 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4015
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(828..1046,950..1504,1452..1604,1583..1801,
FT                 1805..2005,1993..2238,2263..2691,2695..3141)
FT                 /product="Gypsy-38_LMi-I_1p"
FT                 /translation="MTRSPQKWTCYVAGQCIIAKRHRKQQQTFKEPVFSAN
FT                 PQGEQQPVCWYHRRFGENARKCTSPCLYPNAGGGRSATACVLVPPQIRRER
FT                 AKVYVAVFVPKRRRRSIVGAADCPSPSRRLFISDRVSGLKFLVDTGSTSVS
FT                 CHGLRYIVTGLQPLLSNGCQQFNIATYGTQQMELNLGLRRPFKWNFTVADV
FT                 TEAYRSRSPGALQTLARRGKRPTCGQRHWLTVTGFHRNATIHSASSYRHLR
FT                 ANILHFKSELDQATRSTERIFFTLSQSLTRPPGAPKQIPTIRCITSRRRGT
FT                 ASVMPTKTFSARPSRHRRQTVSPSLRPNSTPCCERALSDRQQSWSRLTSSA
FT                 KERWAWRPCGDYRPELEQCRPISCTIIKTITMLTWCNGICLRLCEGYTQIP
FT                 VAKEDIPRQHITPFGLFESMYMTFGLERAQTWQRFIDSSSRASFCFAYLDD
FT                 SRFLFSFSLTENNTAASEVFKRLEHTGCVNVAKCVFGPRRLSGTQNSREGE
FT                 AILQLLGQHIKELRRSWMLNFYRRTYLVQLNYKNHEKGSSTYTGLRLCVSF
FT                 EAQTEHGRCGLLLTPTSSTLAAWTRTDSYRRSAATMVDNAWQPLAYFSETV
FT                 PSRKVECLRRELLAMYEALSTSALKSKRCVHDIYGPQTADIFIQTEQYQLL
FT                 PRQFNHLQFIAQFTTDISTFRVSTTWLTVSCQQCNEPDFPHWPSTAKDRNS
FT                 TRSSTSGLQLQLVDVPGEDAKLMRRSRGDPAISSARSEDKLRQCSQLVPPR
FT                 VRHSRLVSQRFVWPGMQKDCKEWTRTCLQCQKCKVSRHVHAPMVTFQTQLH
FT                 VSPTFIWTLWTLPPSNGQRYL"
XX
SQ   Sequence 4015 BP; 1024 A; 1094 C; 966 G; 931 T; 0 other;
     tagtatattt ttacgtgttc tgttattcca tacgcgatgt tactctatga ttttttatgt        60
     tactctctct gcgtttactc tctgacaact tttgtttttc agttagttcc ttctgttttc       120
     taataaagag ttgtgttacc agtaaacctc tcgcgtcgaa tttatttatt ttatatagtc       180
     gatcagctca aattacgctg ataccgacaa ttggtgaccc cgacgtgatt cgcgagccgg       240
     aagaaccgaa ctgctactga ctttttatcg agatggcaga agatcgtgca gtatcaaggc       300
     tagcggtgcg cttgccgcct ttttgggctg ataatccagt cttatggttt gcgcaggtgg       360
     aagcaagttt ttcctgtgcg ggaattacgg cagatagcac aagtttgcac tcgtggtgag       420
     ccagttggac caacgtttcg cggcgaggtg caagacgtca tcaccgcacc tccggcggaa       480
     gattcctacc gaagactcaa ggctgaatta atacggagag tcgcagcctc acaggaagat       540
     cggattcgtc aagtcctcac gcaggaagag attggagatc gcaagccgtc gcaatatctg       600
     cggcatctgc gcagtaaggt agatacagtc acgtgcctga caatttatta cgcacgctgt       660
     ggagcagtag attaccgccc aaataaaggc tatagtggca tcgcaaactg acatgtcatt       720
     ggacgccgtg gcggagttag cagaccgaat acaggagcta tgcgcctgcc cagattagtg       780
     cagttgcggc acaaggcagc agtacagcgg ctgcagcgcg agcgattatg acacgctcgc       840
     cgcaaaagtg gacatgttat gtggcaggtc agtgcattat tgcaaagcgg cacaggaaac       900
     agcagcagac gttcaaggag ccggtcttca gcgcaaatcc acaaggtgag caacagcctg       960
     tgtgttggta ccaccgcaga ttcggcgaga acgcgcgaaa gtgtacgtcg ccgtgtttgt      1020
     acccaaacgc cggcggcggt cgatcgtagg cgcagccgac tgcccgtcac catccaggcg      1080
     cctgttcatc agtgacagag tttctggcct gaaatttcta gtggacaccg gttcgacctc      1140
     agtatcctgc cacggtcttc gctacatcgt tacaggcctt caaccccttc tgtctaacgg      1200
     ctgccaacaa ttcaacattg cgacttatgg tacccagcag atggagctga acttgggtct      1260
     acgccgtcct ttcaaatgga attttactgt tgcagacgtt acagaagcat atcggagcag      1320
     atctcctggc gcattacaaa ctcttgccag acgtggcaaa cgcccgactt gtggacagcg      1380
     tcactggtta actgtcactg gttttcaccg caatgcaacc atccatagtg caagctcgta      1440
     caggcacctg agagcgaata ttcttcactt taagtcagag cttgaccagg ccacccggag      1500
     cacctaaaca gatccccaca atacggtgca tcacatcaag acgacgaggg accgccagtg      1560
     tcatgccgac caagacgttt agcgccagac cgtctcgcca tcgctaaggc cgaattcgac      1620
     gccatgctgc gagagggcat tatcagaccg tcaacagtcc tggtcccgcc ttacatctag      1680
     tgccaaagaa aggtgggcct ggcgcccctg cggagactat cggcctgaac tagaacagtg      1740
     ccgaccgata tcctgtacca ttattaagac tataactatg cttacatggt gcaacggtat      1800
     ttagtgtctt agactgtgcg aaggctatac tcagatacca gtggctaaag aggacattcc      1860
     aagacagcat ataacacctt tcggcctgtt tgaaagtatg tatatgacct ttggattgga      1920
     acgcgcacag acttggcaaa gattcattga ctcgtcctca agggcttcct tctgttttgc      1980
     ttacctggat gattctcgtt ttctctgaca gaaaacaaca ccgcagcatc tgaagtgttc      2040
     aaacgcctag aacatacggg ttgtgttaac gtcgccaagt gcgttttcgg accgaggcga      2100
     ctttctggga cacaaaattc cagagaaggt gaagctattc tacaattact aggccaacac      2160
     atcaaggaac tgcgtcgttc ttggatgctg aacttctacc gtcgcaccta cctcgtgcag      2220
     ctgaattaca agaaccactg acgcagcact aactggtcct aagagaaagg cagttcgacg      2280
     tacactggac tgaggctatg tgtcagcttc gaagcgcaaa cagagcatgg cagatgcggc      2340
     cttctgctca ccccgacctc gagcacctta gcagcgtgga cgcgcacaga cagctatagg      2400
     cgcagcgctg caacaatggt ggacaacgcc tggcagccac tagcatactt ctcagaaact      2460
     gtcccatcca ggaaagtgga gtgcctacga cgcgagctcc tggccatgta tgaagcgtta      2520
     agtacttccg ccctcaagtc gaagcggtgt gttcacgata tatacggacc acaaaccgct      2580
     gacattttca ttcaaacgga acagtatcaa ctgctccctc ggcagttcaa ccatttgcag      2640
     tttatagccc agttcacgac agacataagc acatttcggg tatcaacaac gtagtggctg      2700
     actgtctcgt gtcagcagtg taacgagcct gactttccgc actggccgag cacagcaaaa      2760
     gatcggaact ccacacgttc gtcgacctca ggattacagt tgcagctcgt cgacgttcct      2820
     ggagaagacg ccaagcttat gcgacgttca cgcggagacc ccgccatttc ttccgcgcgt      2880
     tcagaagaca agcttcgaca gtgttcacaa cttgtgccac ccagggttcg tcactctcga      2940
     ctcgtatccc aacgtttcgt gtggccaggc atgcaaaaag actgtaaaga atggacaaga      3000
     acatgtttgc agtgccaaaa gtgtaaagtg tctcgccatg tgcatgcccc tatggtgact      3060
     ttccagacgc aactgcacgt ttcgcccacg ttcatttgga cgttgtggac ccttccgcca      3120
     tcgaacggtc aacgctacct ttaacatgat cgttttaccc gctggccaga ggcagttcca      3180
     attgacaata taacgctgaa acgttagcct ctgcattcgt tcagcgtggt tagcaaggtt      3240
     tggatgccct caacatatca ccactgaccg tggacgacag tttgagtctg atctgttcgc      3300
     tcagctggcc aagttttgcg gatatgtaca ccacagaacc actagctacc atcccgctag      3360
     taatggcatg atcgaacgct ggcatcgttc ttaaaagcag cgctcatgtg ccatgacaac      3420
     acatggactc agctctacca atggtgttac tgggcctacg aacaacttat aaaccggact      3480
     gattctcggc tgcggaactg tatatggaga aacactgcgt ctgcctggtg aattcgtcga      3540
     ccccaataca cgcaaaaatg acacaagaca gccagatttc ttacgtcgcc tgcgaaacca      3600
     tatcgcacag atcctccaaa ggcttcacga catggcacgc cgccttgtta cgtgcatcag      3660
     gacctagatc agtgctccca tgttatgctt cgcaccgacg gcgtgaaacc accctacaac      3720
     ctccgtacac tggcccatac cgcgtgatac ggagaagtac gcagacaatg gacatattgg      3780
     tgaacggcaa agcaacaacc gtttctctaa atagagtgaa gcctgcgtac gttttcaaga      3840
     gtcatcccga ccgctaacca cggagatatc agaacctgct gaacaagatg cacaaccaac      3900
     accaccgccg ccacccacgg aacagcctcc gacacggaca actcgctctg gtcgtcgggt      3960
     acactttcca gcacgattca tcgataccac gctccgcttc cgcccggggg gctga           4015
//
ID   Gypsy-38_LMi-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-169
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 169 BP; 37 A; 42 C; 50 G; 40 T; 0 other;
     tgtggcgctc tgttttgcca gccgccacgc gtcagcgcga agttcagtgt tgaaagtgca        60
     gtgcagtgta gcggcgaatc aagtgaaccg cgtttataat tagttccgcg ccggccacca       120
     gaggcgcgct actatcgcgg gtgtaataaa tgaatcgcgc tgttaatca                   169
//
ID   Gypsy-38_MoPha-I repbase;    DNA;    INV; 4793 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4793
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1116-1116 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           426..4676
FT                 /product="Gypsy-38_MoPha-I_1p"
FT                 /note="SAP domain, zinc finger, retropepsin,
FT                 reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MAADLTVNDLKEILRAKNLSTSGNKADLVQRLEQADT
FT                 DGTWVAEWKQGHQPSHSQSSEMDEMRQQLAAIQTTLAALTIRLETRPRTAA
FT                 PSSGSTVDLRTGPGIPPPTIDATSQEAVALISDQPPRISISAMAELLGPFD
FT                 GRAENYEGWAQQLELIRRTYRLTDDVARLIITGKLKGKALDWFHSRPEHLS
FT                 LPIDDLILELKNMYFPKLSRMQLRKQFENRVWQRNELFSEYAHDKVILANK
FT                 AKIDESELVDFLIEGIPDDILRDQARMQRFETKADLLIAFEKITLNKKNTT
FT                 QNANKDVQKQANDKKGFVKSNRGNYENKTDVEGNSKSEKNEKRCYNCGTYG
FT                 HLSTACDKEKRPKGSCFNCSSLEHTIKDCPNAKKKKNNNSEVSNVEVDTNI
FT                 DRDYYPTVTLNFEDNEQFDIQLSTLLDSGSPISFIKFQFVKPDLILPLDDG
FT                 SKKYHGLNNSKMSIIGKIEVKCMLYNCTREIKLFVVKDETMVSPMILGRDA
FT                 FKIFGLSIARPTHSTDNTNTDGAHLNEIMNIEVEKIDIATTLDINPEIPFK
FT                 FKEQLSNLFGEIYVKPTRPKTPKIRTELRLRLKAHKPFQFMPRRLAYSEKS
FT                 ELKKITDDLLEREIIRVSESEYSSAVVLTKKKNGKIRMCIDFRTLNKYLES
FT                 DNYPLPLIDDQIDVLRGKKYFSSLDLKDGFYHVEMANDSIKYTSFVTPYGQ
FT                 FEFLKMPFGLKVAPKYFQKYVNEILKELIDSGDVVVYMDDVLVATISLEHH
FT                 LTILQEVFKILVENKLELQIAKCHFLLTEINYLGYKISEEGISPTERGTEV
FT                 VLKYPVPKDLKSLQSFLGFVSYFRRFIQSFSFVAKPLYDLLKSKNQFKFGS
FT                 EQLEAFNKLKQLLVDAPILAIYDPRAETELHCDASSRGFGAILLQRGTDRK
FT                 LHPVFYFSKRTSDVESRYHSFELEMLAIIYALKRFRVYLYGIKFKIVTDCN
FT                 SLALALKKHEINPRISRWVLELQNYEYTTEHRSGTRMTHVDGLSRCNFIGV
FT                 VEDNSFETNLILTQNLDQAIAKIKADTERSESKTFEVRNGVVYRKVGEKLL
FT                 FYVPSEMEKSILFKYHDELGHMGAEKVIDIISKSYWFPQLKKKVSDHLQNC
FT                 FKCIAFKPPSGKSEGKIQSAPKGDKPFETIHIDHVAISDMRVKSKKYILVI
FT                 IDSFTKYVKLYPTKSTTVTEVINNLEIYFTYYSKPKQIVTDRGSCFTAKEF
FT                 TDFTQKRDIVHIKIATGSPQANGQVERVNRTIAPMIGKLSDTECGKNWTKI
FT                 VNDIEFALNNSIHKSTKETPSMLLFGVTQRGKIHDPIAEYINDNINNNTRN
FT                 LSDLRAKASDKIISQQNQVKAQADKKKKEPFKYGIGDYVMLKNIDTTAGIS
FT                 PKIKPRFKGPYEIIKILRNNRYVVADISGCQVTQKKYEGVWEPANMRLWRK
FT                 RNQ"
XX
SQ   Sequence 4793 BP; 1641 A; 927 C; 1031 G; 1193 T; 1 other;
     gttcagaagt gggatcgacg agcgatcgag tggtcgtagt tgtttaagta gtcggttcgt        60
     taagtagtcg gttcgggcag cgatatagtg atcggaagca aggagacgaa acggcgaggg       120
     cagcttagtg cgtgtggctc tcgaagacgt attcgtgatc tcgcaacatt gttcggtggc       180
     tggcagccgc gattatatta acattgtaac gattgatggt gccagtctcg tgtttgagag       240
     cacggtaaat cgcgtcgcgc cattgccgcc tcgaaacata tccattgcaa cggaagggac       300
     gccatctttg tgcgcggtgg acccatttgt ttcgagatct ttcgacgccg agacgattga       360
     cggctgggag acaggcttac gtcttcagcg attgtcggta caagtgacca cataattgtt       420
     gtgcaatggc agccgaccta acagtaaatg acctgaaaga gattttacgc gcgaaaaatc       480
     tcagtacaag cggcaacaag gccgatttgg tacagagact agaacaagcg gatacagatg       540
     gcacttgggt agcagagtgg aagcagggac accaaccttc ccatagccag agcagcgaga       600
     tggacgagat gagacagcag ttggcagcaa tacagactac gttggctgca ttgactatac       660
     gcctagagac aagaccgagg acagcagctc catcttcagg gtcgacagtg gacttacgaa       720
     cgggcccagg aattccccct ccgaccattg atgcaacatc acaagaagcc gtggcgctga       780
     tctccgacca gccgccgcgc atatctataa gtgcgatggc cgaattgcta gggccattcg       840
     acggcagggc ggaaaactac gaaggatggg cacaacagct ggagctgata cgcaggacgt       900
     acaggttaac cgacgacgtg gcgcgtctta ttattacggg taagctcaaa ggcaaggcac       960
     tagattggtt tcactcgcgg ccagaacact taagtttacc cattgacgac ttgattctag      1020
     aattaaaaaa tatgtacttt ccgaagttga gtagaatgca attacgcaaa caattcgaaa      1080
     atcgtgtttg gcagcgtaat gaattgttca gtgaatacgc acacgataaa gtgatactag      1140
     ctaacaaagc taaaattgac gagtcggaat tagttgattt tctaatcgaa ggtattcccg      1200
     atgatatctt gcgcgatcaa gcgcgtatgc aacgtttcga aacgaaggcc gatttactta      1260
     ttgcttttga gaaaattacc cttaataaga agaataccac acagaacgcg aacaaggacg      1320
     tgcagaaaca agctaacgat aagaagggct ttgttaagtc aaatcgcgga aattatgaaa      1380
     ataagaccga cgtagaaggt aattcgaaat cggagaagaa tgagaagcgc tgttacaatt      1440
     gtggtacgta cggtcatcta tcgactgcgt gtgacaaaga gaaaaggccg aaaggttcgt      1500
     gctttaattg ttcgtccttg gagcatacga ttaaagattg tcccaacgcg aaaaagaaaa      1560
     aaaacaataa ctctgaggtt agtaatgtcg aagtagatac gaatatcgat cgcgattatt      1620
     acccaacggt aacgttaaat tttgaagata acgaacaatt tgatatccag ttatctaccc      1680
     tattggatag cggaagtcct attagtttca ttaagttcca atttgtaaaa ccggacctta      1740
     tcttaccttt agacgacggt agcaagaaat accatggact taacaattca aaaatgagca      1800
     ttatcggaaa aatagaagtt aagtgtatgc tatacaattg tacgcgcgaa attaaactct      1860
     ttgttgttaa agacgagaca atggtctcac caatgatttt aggtcgggat gcttttaaaa      1920
     tatttgggct aagtatcgcc aggcctacac attctaccga taacactaat actgacggcg      1980
     cgcatttgaa tgaaatcatg aacatcgaag ttgaaaaaat agacatcgca actactttag      2040
     atatcaatcc ggaaattcct tttaaattta aagagcaatt gtcgaatttg tttggagaaa      2100
     tctatgttaa gcctacaaga ccaaaaactc ctaagataag aacggaactt cgtcttcgac      2160
     ttaaggcaca caaacctttc caatttatgc cgagacgctt ggcttattca gagaagagcg      2220
     agctaaaaaa aataactgat gacttattag aacgggaaat tattagagta agcgaatccg      2280
     aatattcgtc agccgtagta cttacaaaga aaaagaacgg gaaaatacgg atgtgcatcg      2340
     attttagaac gttaaataaa tacctcgaat cggataacta tccgctaccg ctcattgacg      2400
     atcaaattga tgtattgaga ggaaaaaaat attttagctc actcgacctg aaagacggtt      2460
     tttatcatgt ggaaatggca aacgactcta tcaaatacac atcttttgtt actccgtacg      2520
     ggcaatttga atttttaaag atgccgtttg gattaaaggt tgctccgaaa tatttccaaa      2580
     agtatgttaa cgaaatacta aaagaattaa ttgactcggg ggatgtcgtt gtctatatgg      2640
     acgacgtgtt ggtagcaaca ataagtcttg aacatcattt gactatccta caggaagttt      2700
     ttaaaatttt agtagaaaac aaacttgaat tgcaaatagc gaagtgccat ttcctattga      2760
     cagaaataaa ctacttaggc tacaagattt cggaggaggg cataagtccg acagagcgag      2820
     gaactgaggt agtattgaaa tatccggtac cgaaagattt gaaaagtctt caaagctttt      2880
     taggttttgt ttcttacttt cgcaggttta tccagtcatt ttcatttgtt gcaaaaccac      2940
     tttatgactt actaaaatct aaaaatcaat ttaaattcgg aagcgagcaa ttggaagctt      3000
     ttaataaatt gaaacagctg ttggtagatg caccgatatt ggcaatctat gatccacgag      3060
     cggaaacaga gctccactgt gacgccagct ctcggggatt cggagccatc ctcttgcaga      3120
     gagggaccga tcgcaagcta caccccgttt tttacttttc aaaaagaaca tcggatgtcg      3180
     aaagcagata tcatagtttt gaattagaaa tgctcgcgat tatttacgca ctaaaacgat      3240
     tccgggtata cttgtacggg ataaaattca aaatagtcac cgattgcaat tcactcgcat      3300
     tagcattgaa aaaacacgaa attaatccga gaatttcgag atgggtacta gagcttcaaa      3360
     attacgagta tacgaccgaa catagatcag gaacacgtat gacacacgtc gatggcctca      3420
     gtcgttgtaa cttcatagga gtcgttgaag ataactcatt tgaaacaaat ttgatactta      3480
     cacaaaacct cgatcaagca atagcgaaaa ttaaagccga cacggaacga tcggaaagta      3540
     aaactttcga agtgcggaat ggagtcgtat accgaaaggt cggtgaaaaa ctacttttct      3600
     atgtaccttc cgaaatggaa aaaagcattc tcttcaaata tcacgacgag ctgggtcaca      3660
     tgggggcaga aaaagtaata gatattataa gcaaatcgta ctggtttcca caattgaaga      3720
     aaaaggtatc ggatcatttg caaaactgct tcaaatgcat cgcatttaaa ccgccatcag      3780
     gcaaaagcga gggcaaaatt caaagcgcac caaagggcga taaacctttc gaaaccatac      3840
     acattgacca cgttgctatt tccgacatgc gagtcaaaag caaaaaatat attcttgtaa      3900
     taatagatag ctttacaaag tatgttaaat tatatcctac gaagtcaacc acggtgacgg      3960
     aggtaatcaa caatctcgaa atttatttta cgtactatag taaaccgaaa caaattgtaa      4020
     cggatagagg atcgtgtttt accgcaaagg agtttacaga ctttacacaa aaacgtgaca      4080
     tcgtacacat caaaatagct accggctcgc cacaggccaa cggtcaagtg gaaagagtaa      4140
     atagaaccat cgcaccaatg attggtaaat tatccgacac agaatgcggt aaaaattgga      4200
     caaaaatcgt caacgatatt gaatttgcac taaataactc aattcacaaa tcaacaaaag      4260
     aaactcctag catgcttcta tttggagtta ctcagcgggg taaaatacac gatcctatag      4320
     ccgaatatat taatgacaac atcaataaca acactagaaa cttaagcgat ctgcgggcta      4380
     aggcaagcga caaaattatc tcacaacaaa accaagtaaa agcgcaagcc gataaaaaaa      4440
     agaaagaacc ttttaaatac ggaattggcg attacgtaat gttaaaaaac atagacacta      4500
     ccgcaggaat atcacctaaa ataaaaccta gatttaaagg cccgtacgag ataataaaaa      4560
     ttttacgaaa caatagatat gtcgtagcag acatttctgg atgccaggtc acacaaaaaa      4620
     aatacgaagg tgtatgggaa cccgcaaata tgcgactatg gcgaaagcgt aaccaataag      4680
     acctgtattt ataatactac aatcatwaaa tttttttttt ttttcctatc tttaaaactt      4740
     aaaacaaatt gtaacgccgt tcgggacgaa cgaggggtca ggtatggccg aac             4793
//
ID   Gypsy-38_MoPha-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-197
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1202-1202 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 197 BP; 57 A; 38 C; 58 G; 44 T; 0 other;
     tgtaagagaa tagcatgtaa tgcatgagta cgtagttagg agtagaagag atggagggcg        60
     ctggcgcgac cgacgagagg gaggatgaac gtggtcgagc ggtagttcag ttgttacttg       120
     acccgagcca cgagaaccag aataaagcag ttcttacgaa attgtaataa ttccttttcc       180
     gccctaggcc ccttaca                                                      197
//
ID   Gypsy-38_MSe-I repbase;    DNA;    INV; 5111 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5111
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 915-915 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1050..1895
FT                 /product="Gypsy-38_MSe-I_1p"
FT                 /translation="MSEELLARLSALEAENANLRASQVQPNATSICRVAIK
FT                 LPPFWPDRANVWFAQAEAQFLLAGITTDETKYSHILSKIDHQIAGEIEDIV
FT                 ANPPAQDKYKNLKNTLVKRFSSSEEQRLRKLLSEEELGDRKPSQFLRHLKS
FT                 LAGPTFTDDNILRQLWLRRLPQHVQGILAAQADLGLERIADIADKIVEAQP
FT                 ATANVCATAAAPSLTTLMEQIEELRKQVAALSSTRTGRFRSRDRSSSRRRQ
FT                 SSRNTTYNARSSCWYHKKYGTKANKCVTPCNWESENPPSNQ"
FT   CDS           1763..5080
FT                 /product="Gypsy-38_MSe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KKAIFPQYHLQCPLELLVSQEVWYKGQQVCYSLQLGV
FT                 GKPSEQSVAAATDCDSTQPNGRRLFVTDHVTKRQFLIDTGSDLCCYPRRWL
FT                 AGQRKPTDYELSAANGSSIKTYGTINLTLNLGLRRKFIWQFVVADVTTAIL
FT                 GSDFLSYYHLLPDCRNKKLVDGTTSLSASASSATSEQPSIKAVASANSAFA
FT                 QVLAEFPDITRPPGLPRTVKHNTVHFIKTTDGPPISCQPRRLAPQKLISAK
FT                 KEFDDMIQSGIARPSKSAWSSPLHMAIKKDNTWRPCGDYRSLNARTIPDRY
FT                 PVRHINDFAHNLAGANIFSTLDLVKAYHQIPVAEEDVPKTAIVTPFGLFEF
FT                 PFMTFGLRNAGQTFQRFVDEVTRGLDFCFPYVDDILVYSADEALHREHLRI
FT                 LFGRLQNYGVVINPSKCILGAREVAFLGYHISPEGTRPPQERVQAILSFPP
FT                 PKTIQGVRRFLGMLNYYRRFVPHAAQFQAPLIDAVVATNGKGAKPFTWSPE
FT                 LLTQFEACKRSLSNATLLQHPINDAPLGLFTDASSAHVGSCLQQKIDGQWF
FT                 PLAFFSRKLTTQQAQWPTYYRELLAVYESVQHFRHVLEVQHVTIFTDHKPL
FT                 LYAFVQRREKLPPSQLNQLSFISQFTTDIKYIKGEDNVVADAMSRVDAIAL
FT                 EQDYEDLAKSQETDQELAELLLHNSSLQLTKVVIPGTDILVTCDMSTGKPR
FT                 PYLTPTFRRAAFNKLHNLSHPGARATTHLVTKRFVWPSVKKDCKEWARTCE
FT                 ACQRAKVSRHNSAPPGKFDLPSGRFRHVHLDIVGPLPVCNDFRYCLTAIDR
FT                 GTRWPEVWPMRSITAEEVAETFTREWIPRFGVPLVITTDQGTQFESDLFRR
FT                 LMIHFATKRIRTTSYHPCANGMIERVHRQLKAALMCHQDSWVRALPFVLLG
FT                 MRSAFKEDIKCTTAEMLYGETLRLPGEMLISNPGPVGIEDSADFVVQLRRK
FT                 MSTVRPIPASSHSKPSTFIFKELASATHVFLRDDTVRRPLQPPYTGPFRVV
FT                 DRAEDGKTMTLDIKGKCVVVSVDRLKPAFIDHTNLSSSDSSLSEPPMKLPN
FT                 VPGKSVLPQSIFPNSPPSVSPDKTATTTNLPYTTRSGRRVKFKDFPDFC"
XX
SQ   Sequence 5111 BP; 1272 A; 1413 C; 1087 G; 1339 T; 0 other;
     ttggtgaccc cgacgtgatg tgaacacgta agtcgcaacc tgcaacagcc gtattgatga        60
     gcattgacga ctgaaaaacg ccgtggcaac aactttcgcc cagcatcggc ctcatcaggg       120
     ccccccgcaa gctcaccgct tacccggtcc agcaactacg acgctgagcg agatacatcg       180
     gtcgccgcca cggctagatc ggtccaatac acccggattg tcgagagtca acgcaattgg       240
     aagtttgtgc ataaaaaaaa tctcaagagg aagttcgccg aaattgtatt tcaacaacca       300
     cttgagtgac gtcatcggcg tgggtgctat gccgcgccac cgtggttcgc catcggcaac       360
     atcggcatcg gccgtactag caaatgactg ctcctgtcaa ctgtcaactt agctgtcaac       420
     tgtcaactta gctgtcaact gtcaacttag ctgtcacctg tcaacttagc tgtcacctgt       480
     caacttagct gtcacctgtc aacttagctg tcacctgtca acgtgcttcg ttccggttca       540
     cgcaagtact gcttatctac gtttttgccg gagacttgga aattacaagt ccattacaga       600
     cattttaacc tcagtgaagt tcaatcttaa cgataacatc cagtgacatt cggtgtgact       660
     gctatttaaa tttaaagtgc catatagcat ttgttaatat tgtttacatt taatccaact       720
     ttgtttacat taacttaaat ttgttcatac ctttgtataa aataagtgat ggcaatcagc       780
     cggactaacc gtaacgttaa tactcattgt agaaattcgc tcaatggtta ttgtccattt       840
     agattaagta tatattttgt atttgcttat atcaaaccac acaactaatt tctaagtatt       900
     ttaccatttt gtgttcattt atgtttatct gctattttat gtttatcaca agtgcaaata       960
     tctaaaaacc taaattttat tattgtgtgt ggtgacggtt ggttgtggtt cctttccaac      1020
     acctgcttat tcattccctt tcattaacca tgtctgagga attgctagct cgcctctccg      1080
     ctttggaggc tgaaaacgct aatctgcgcg cctcgcaagt gcagcctaat gctacgtcca      1140
     tatgcagggt tgctataaaa ctgccaccat tttggcctga tagggcaaac gtttggtttg      1200
     ctcaagcaga ggcacagttt ttgcttgcag ggattaccac ggatgagacc aaatacagtc      1260
     acattctcag caaaattgat catcaaattg ctggggaaat cgaggacata gtggccaatc      1320
     ccccggctca ggacaaatat aaaaacttaa aaaacacact tgtcaaacgg ttttcttcat      1380
     ctgaagaaca aaggttgagg aaacttctca gtgaggagga acttggtgat aggaaaccat      1440
     cacaattcct ccgtcacctg aaatctcttg cagggcccac atttaccgac gacaacatcc      1500
     ttcgtcagtt atggctacga cgcttacctc agcatgttca aggcatcctc gccgcccagg      1560
     ccgatctcgg tttggagagg atcgccgaca tagctgacaa gattgttgag gcgcaaccag      1620
     ctactgcaaa tgtttgcgcc actgccgccg cgccttctct gaccaccttg atggagcaga      1680
     ttgaggagct aagaaagcaa gttgctgctc tatcctccac ccgcactggt cgctttaggt      1740
     ctcgggatcg ctcctcatct agaagaaggc aatcttcccg caataccact tacaatgccc      1800
     gctcgagttg ttggtatcac aagaagtatg gtacaaaggc caacaagtgt gttactcctt      1860
     gcaactggga gtcggaaaac cctccgagca atcagtagcg gcggcgactg attgcgactc      1920
     cactcaaccc aacggccgcc gtctatttgt cactgaccat gtcactaagc gacaattcct      1980
     tattgacact gggtctgatc tatgctgcta cccacgccgc tggcttgcag gtcagaggaa      2040
     acccactgac tacgagctca gcgccgctaa tgggagcagt attaagacct acggcactat      2100
     taacttgaca ctgaaccttg gtctccgccg gaaatttatt tggcagttcg tcgttgccga      2160
     cgttaccacc gctattctgg gctcagattt cctgtcttat taccatcttt tgccagattg      2220
     tcgcaataaa aaattggttg acggaaccac tagcctttca gcttccgcct cttctgcaac      2280
     atcggagcaa cccagtatca aagccgttgc ttcagccaat tctgctttcg cacaggtgct      2340
     ggcagagttt cctgatataa cccgtccacc aggccttccc aggacggtca aacacaacac      2400
     tgtccacttt ataaaaacaa cggacgggcc acccatttcc tgtcagcctc ggcgtttggc      2460
     tccgcagaaa ttaatctcag ccaaaaagga atttgatgac atgattcaat caggcatcgc      2520
     acgaccatct aaaagtgcct ggtcgtcccc cttgcacatg gccatcaaaa aagacaacac      2580
     ttggcgtccc tgtggcgatt acaggtcact gaacgccaga acaataccag accgttaccc      2640
     ggtccgacac atcaacgact ttgcccacaa tcttgcaggt gccaatatct ttagcaccct      2700
     cgacctggtc aaggcctacc accagatccc cgtggcagaa gaggacgtcc cgaagaccgc      2760
     catcgttact ccgtttggcc tcttcgaatt tcccttcatg accttcggtc tccgtaacgc      2820
     cggtcaaacc tttcaaaggt ttgtcgatga ggtcacacgg ggtctcgact tttgttttcc      2880
     ctacgtggat gacatcctcg tctactctgc agatgaggct ctccaccggg agcatcttcg      2940
     gattcttttc gggcgcctcc aaaattacgg ggtagtaatc aacccttcga agtgtatcct      3000
     tggtgctcgt gaagtggcat ttctgggtta ccatatcagc ccagaaggca ccagaccccc      3060
     acaagaacga gtgcaagcta ttttgagttt tccccctccg aagactatac aaggtgtgcg      3120
     tcgttttctc ggcatgttaa actattaccg ccgtttcgtg cctcacgccg cgcagttcca      3180
     ggccccactt atcgacgctg tggtcgctac caatggcaaa ggcgctaaac catttacatg      3240
     gtcgcctgag ctactgacgc agtttgaggc ctgtaaaagg agtctatcca atgccacttt      3300
     gctacagcat ccgattaacg acgcgcccct tggattgttt acggacgctt caagtgccca      3360
     tgtcggatcc tgccttcagc agaaaattga tgggcagtgg tttccccttg ctttctttag      3420
     caggaaactt accacacaac aagcgcagtg gccaacttat taccgcgagc tgctggcggt      3480
     gtacgaaagc gtacaacact tccgccacgt tctcgaggtt cagcacgtga ccatattcac      3540
     agatcataaa ccactcctat acgcttttgt gcagcgtagg gaaaaactcc caccctcaca      3600
     gttgaaccaa ctatctttta ttagtcagtt caccactgac attaaatata ttaagggaga      3660
     ggacaatgtc gtcgctgacg caatgtcacg cgtcgacgct atcgctctcg agcaagacta      3720
     tgaagacctt gctaaatcac aggagactga tcaggagtta gctgagcttc ttctccataa      3780
     ctctagcctt cagttgacta aagtcgtcat tcctggcact gacatcctgg tcacctgtga      3840
     tatgtctacc ggtaagcctc gtccctattt aacccctact tttcgcagag cagccttcaa      3900
     caaactgcat aacttaagtc acccaggcgc tcgtgctaca acccatctcg tgaccaaacg      3960
     tttcgtctgg ccttctgtca aaaaggattg caaggagtgg gctcgcactt gtgaggcgtg      4020
     tcaacgtgct aaagtgtcgc gccacaactc tgctccgccc ggcaaattcg accttccatc      4080
     cggtcgtttc cgacacgtcc acctcgacat cgtcggtccc ttgccggttt gcaatgattt      4140
     ccgctattgt ttaacagcta ttgacagagg taccagatgg cccgaggtgt ggccaatgcg      4200
     ttccataacc gcagaggaag tggccgagac tttcaccaga gaatggattc cccgcttcgg      4260
     cgttccttta gtcataacca ctgatcaagg tactcagttt gagtcggacc ttttccgccg      4320
     actgatgata cacttcgcca ccaagcgcat tagaacaact tcttaccacc cctgtgctaa      4380
     cgggatgata gaacgcgttc atcgccaact taaagctgca cttatgtgcc accaggattc      4440
     ttgggttcgt gcgctccctt tcgtcctcct tggcatgcgg tccgccttca aggaagatat      4500
     taagtgcaca actgctgaaa tgctctatgg agaaactctc cgcctacctg gagaaatgtt      4560
     aatttcaaat cctggacctg ttggcatcga ggactcagca gattttgtcg tacaattgcg      4620
     acgcaaaatg tcgactgtac gcccaattcc tgcttccagt cattctaaac cctcaacctt      4680
     catcttcaag gaacttgcat cggcgacaca cgtatttctc cgtgacgata ccgttagacg      4740
     ccccctacaa ccaccgtaca ccggtccatt ccgggtcgta gaccgtgccg aagacggcaa      4800
     gactatgaca ctggacatca agggaaagtg cgtcgttgtc agcgtggatc ggctcaaacc      4860
     ggccttcatt gaccacacta accttagctc tagcgattct agcttgtctg agccgccgat      4920
     gaaactaccg aatgttcctg gaaagtctgt cctcccacaa tccatttttc ctaactctcc      4980
     cccttctgta tcaccagata agaccgcaac cacaactaac ttgccctaca ctactagatc      5040
     tggtaggcgc gttaaattta aggattttcc cgatttttgt taacctttta tccttctccg      5100
     tgggggggtg g                                                           5111
//
ID   Gypsy-38_MSe-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-221
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 964-964 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 221 BP; 76 A; 53 C; 46 G; 46 T; 0 other;
     tgtggcgtat ccgaacgcca ctcggtatgt ctatggacaa aaactaaaac ggagtattgt        60
     ctacgacaag ggaactcaca cacaccgaac acacgcagtg gagtgcgcgg ctctgtacaa       120
     ttaaacgata aaataaaagg ccgttataag aagaccgaat ttttattatt gtcagcctca       180
     atacggtgct cgcagaaaaa cctacatcca gcgatcccaa a                           221
//
ID   Gypsy-38_NVi-I repbase;    DNA;    INV; 8383 BP.
XX
AC   .
XX
DT   06-JUL-2009 (Rel. 14.07, Created)
DT   06-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposon from Nasonia vitripennis, interanl
DE   region.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_NVi-I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8383
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1391-1391 (2009).
XX
DR   [1] (Consensus)
XX
CC   The 3'-end is incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           1067..2773
FT                 /product="Gypsy-38_NVi-I_1p"
FT                 /translation="MIVVPRRIEVERTNVTPERLNVGPAEKRVVHRSQRSN
FT                 RSRRPADRVHRSRDRTVSRSPSRHSRHDGHRRERRDRRHRSRDSTPRARRE
FT                 RRHRHRDRSDSEDSFSDDRSSHYSRDSRRNRRRRHRYSESSSSSRSDSLSS
FT                 GWSSDGSTRSERVRSRKIETLTKSLKNWTPRFSGTEGRSKAENFLSSLTEY
FT                 VRTRRPPARRLLSCLSCLLTDDAARWYRGAQSDFRSWRQFRRAFLFRFIGE
FT                 TDEQEVKMDLARRTQGVGESISAFIACYKYLRGHLRHPPSMRDQVATVYAG
FT                 LRPEYRNFMVNLPRYSLDDIERYGHQYERHCNLNAHWAPPPPSDKMNLPGS
FT                 AFVADSGGKKKGKEVSAIEPPPETGNGQGXSSAGGTNPPNNTNKGKNNRNR
FT                 KGNNNNGNQSNAGSNSAPAGGSSPTALVQVTPAGAQPANVAASDGLRIGNQ
FT                 PWGGGNPQNCAPNPPPQQYFAPAQPPNNGLQVGRGNGSPKIGPCFGCGIEG
FT                 HRAANCPKMNCFECGQSGHRTASCPKRLARQVYCQLCNKEGVTVREWSNCN
FT                 ILQRLGNGVAGTQLNPLGPAK*"
FT   CDS           3284..6667
FT                 /product="Gypsy-38_NVi-I_2p"
FT                 /translation="MTLGKGSAESESEKLNRLLKQALGPELSEGLADDASA
FT                 DYGDPKRGLPTDPESTGAVPRPVPAVKCSVRLWEPKTPLSVVSEGGETDEE
FT                 SVQNDPVATDNVPPVEDIDAIVDDNRKFMRLCLGGRWYTALVDSGASVSLM
FT                 KADVAERFSSRLEPCDTVIRGFNGYSATVKGVLNRLKIRVVEQCYHDIILG
FT                 IDFLEKWRVELAPWDNRWRLPDGMWHDFCGKVASNGKELYAECAGLSELTQ
FT                 SEHDRLLAVVKRFLPENPPTDLKATWLIKHKIVYVGNKTVKHKHRRWSPVR
FT                 WAIAMREIEEMRRMGVIERSNSDFSSAPVVANKEGGEKRFCVDYRDVNDGT
FT                 VKDAYPLPPIDSILDKLRNARYITKIDLRKAYFQVPLDEDSKKYTAFSMPG
FT                 SGLWQFTRMPFGLANAPATFQRLVDSLFGPEFEPYVFGYLDDIIIVTENFE
FT                 DHLKWVEIVLKRITEAGLTVNRKKCEFGCSQVRYLGYLLDREGLRPDPERI
FT                 APVLEYTPPKTKKQLRRFLGMVGWYSRFIPNDSEIKVPLLKLLRNTQPWVW
FT                 EEEQQEAFEALKLALTRAPVLARPDFTKRFTIQCDASDFAIGAVLTQEFED
FT                 GEHPIVYLSRVLSPAEKNYTTTEKECLAMIFAIKKLRPYIEGYGFTVITDH
FT                 SALRWLQNLKDPTGRLARWALELQQWDFEIVHRKGANHHVPDALSRSKGED
FT                 EEVVSAFDVITDEWYLQRRRDVITSPKKFREWKVEDEMLYRYRRDPLLDPI
FT                 THPSEGWRLVVPIEYRPRVLSDAHREASSGHLGVEKTYDRVAREYYWPGVW
FT                 HDVNHYVQECDECQRYKTSQLGTAGQMGQRIVERPWAVVAADLMEFPTSKS
FT                 QYKYLIVFQDLFTRWVELKPIRKATGQAVAKAFEELILFRWETPDFLLTDN
FT                 GKEFINKTLKDTLEEYGVTHVTTPPYHPQANPVERSNRTLKTMIATFVGKD
FT                 HRTWDQHLHEFRHAVNTAMQSSTRVSPAFLNYGRHPQPVKSLRREVEVRGP
FT                 KIELDPSVWIDRVKRLDALRDIVLKHLDQAWGKQAAVYNQGKRVLEFEVGD
FT                 VVRRKVHSLSKGVDGKCNKLDANYSDPCVILQKLSPLVYILETKDKRQTAK
FT                 VHLSELRRYVPPRNRAANT*"
FT   CDS           join(6686..7405,7390..8130)
FT                 /product="Gypsy-38_NVi-I_3p"
FT                 /translation="VVLFLFCAIASLRLVTGMRRLTDSILMDVKSPGSTMK
FT                 TVSWAEHIAEMESECERELRAIEDQREKLRQSRPRTDMTRAAEIWARRSPA
FT                 CPSXSSMEEEERWSAGVTDTRIPRKTMIGAAGPLPLTEEEREAYQREGIPV
FT                 EEEPSALEESRAAVDELEALVGDGDDLTITISNERAEAVGEYPRLRGPNGK
FT                 RRKYNPLRHLELSRWWQDHRATVTTPRRVHQSVAKPWRYVYHSISATGFRR
FT                 HRFPLTFATFQVDIPFYQPPPAPRNAPLMPRLEIPGAESDSSGSPSTGAVP
FT                 RRYGGTTNTGSRSRSSRRRAAVRLDGVMFGGLTPIATDPTLDPPPRTCFNC
FT                 WQPGHRRTGCRAPPSRFCFNCGRQETDLANCPRCRDAHRRHMRHQGFRPRG
FT                 RGNPKGEAGMPGNWEYPAQYPQIDAPPASYDEAMAGREPPYRPAIRMPPPR
FT                 DERDAGQYPRPLPSLWMEALHHIATAPPEVLALLRSHLSNA*"
XX
SQ   Sequence 8383 BP; 2124 A; 2039 C; 2481 G; 1722 T; 17 other;
     acatggcgcc caccgtgggg cttttacgct aggtagcaac aaagattttc ccttttcctg        60
     gcgtggcaag taggaggtga taaagtaatc gacgattgcg tcattttgtg cctcagtatt       120
     ttccccgttg cggcatattt ccgacagagc ggagcctgcg agcccacatt aagattgcgc       180
     caagtatcga gatgttggat aatcgggtaa acgattatcg ggcgcggatg cgcaccatct       240
     tgtcgcgatc gagagattta cgagcggtgt tgaagaattg taaaagattg tccgtggacg       300
     aggttctcat gcgtttgacc gaatcaaagt ttagtacggc tgggtcacat acagaaagag       360
     ccgagcggtt attctgtttc attattatgg tcacgggaca ggcgaaagat gtcccgtggt       420
     accccgaatt cgacgaggaa cagaatattc cggtaggaaa cgttcctggg ccgcagttag       480
     tgatagatgc gtctgacgga ccgatgatga gaagagggag gcgaaggagc cgcggcggcg       540
     gtggtcgaag cgagtgaaag cgtggacgca aatccgaatg cgccagatcc cccacctgag       600
     cgacagcctc caacgggtga taaggcgagc gagggaaaca aatcgctgcc tttggtgcaa       660
     cgtagcacca gttcaacggg gactataccc aagcagacac gatcggccgt gctaaatcct       720
     cgccccgcgc ccgtaggctt ggaatcgctg caacaacagt tagagcaggc tgcatttaag       780
     cgtctagacg cctctgagcc gacagcgcgg actcctagaa ggcgaattga accgattcta       840
     gaggtagaca cgccggaggc cgataaatct agcgccccgt tgacattgcc aaaccctaat       900
     gaattgtccg tgaatcctcc cttcaaggaa atcagcgttg cgccggcccc tggggccaag       960
     aagaaagcgc cagttccgcg cactccgaca gagggaaagg aggtcgagaa accgaaaggt      1020
     aaacgggaaa ataggacgcg ttcaaacgaa aatcgtccgg tttcggatga tcgtcgtacc      1080
     acggcgaata gaagtcgaga gaacgaacgt aacgcccgaa cgcctgaacg tcggccccgc      1140
     cgagaagcga gtcgtgcatc gcagccagag aagcaatcgt tcgcgccgcc cggctgatcg      1200
     tgtacatcgc tctcgtgatc gaactgtttc tcgttctcct agtcgtcatt cgcgccatga      1260
     cggtcatcgt agagaacgac gtgatagacg acatcggagt cgagattcca ctccccgagc      1320
     gcgtcgagaa cgtcggcatc gtcatcgcga caggtcggat agtgaggatt cgtttagcga      1380
     cgaccgcagt agtcattaca gccgtgattc gcgacgaaat cgaagacgga gacaccgata      1440
     tagtgagtca tcgagtagtt cgcgatccga ctctcttagt agcgggtggt cgagcgacgg      1500
     aagtacgcgt agtgagcgtg tgcggtcgcg aaaaatcgag acgttgacga aatctctaaa      1560
     gaattggact ccgcggttca gtgggacgga agggcggtcc aaggcagaaa attttttgtc      1620
     tagtttgacg gaatacgtgc gtacccgtcg gccgcccgct cgtcgcctgc ttagttgtct      1680
     gtcgtgtttg ctcacggacg atgccgcgcg ttggtaccga ggtgctcagt ccgatttccg      1740
     tagttggcga caatttcgcc gggcttttct gttccggttc atcggcgaga cggatgagca      1800
     ggaggtcaag atggacctgg cgcgtcgtac tcaaggggtt ggagaatcaa tctccgcctt      1860
     tatcgcgtgc tacaagtacc ttcgcggtca tttgcgccat ccccccagta tgcgggatca      1920
     agtagcgacg gtgtacgccg gactgcggcc ggaatatcgg aatttcatgg taaatttacc      1980
     gcgttattcg ttagatgata tcgagcggta cggtcaccag tacgaacggc attgtaactt      2040
     aaacgcgcac tgggcccctc cgccgccttc tgataagatg aatcttccgg gttcagcgtt      2100
     tgtagccgat tccggaggga agaagaaagg caaagaagtc tctgccatag aaccgccgcc      2160
     ggaaacggga aatgggcagg gacakagtag cgccggtgga actaatccac ccaataacac      2220
     gaataagggg aaaaataacc gaaatcggaa aggcaacaac aataatggga accagtcgaa      2280
     tgcgggctcg aatagtgctc cggcgggagg ctccagtcca acggctttgg tacaagtcac      2340
     gcctgcggga gcacaacctg cgaacgtggc tgccagcgat ggactacgca taggcaatca      2400
     gccctgggga ggaggaaatc ctcagaattg cgcgccaaat cctccgccgc aacagtactt      2460
     tgcgccggcc cagccgccga ataatgggct ccaagtaggc cgcggtaacg gatcccctaa      2520
     aatcggaccg tgttttgggt gtggaatcga gggacaccgc gccgcaaatt gcccgaagat      2580
     gaattgtttc gaatgcggcc aaagcggaca tcggacggct agttgtccga aaagattggc      2640
     acgacaggtg tactgccagc tgtgcaacaa ggagggggtg acggtacgcg agtggtcgaa      2700
     ttgtaatatc ctccagcgtc tgggaaacgg agtagcggga actcagctca accccctggg      2760
     acccgcgaag tgaggggggt tgaacattca gtagcgccga tcgttccagt agatcctggt      2820
     ttggtcattg gcgccgatac cccagtagta gcgtcagggg gtgtatcaga cgaggcggaa      2880
     ggggaaggag agtcggattg gggagaagag tggccggagt atatagacgc tcacccgcga      2940
     gagaagtcga agtcgaagag atgtacgaag gaagaattgg cgccatccga agggtttggc      3000
     gaccagttga agtcgaagtc gaagagaggt acgaaggaag aactggcgcc aaccgaagta      3060
     attggcgacc agccgaagtc gaagtcggag agaggtacgt aggaagaact ggcgccaacc      3120
     gaattaattg gcgaccagcc gaagtcgaag tcggagaaag gtacacwgga aaaacgggyg      3180
     cctaccgmrg taattggtga mcagttggaa tcggtgakaa maaagtcgga gattcwarcg      3240
     gagcccaagt tggcgccgac cgcgatstcc awcgagtggg cggatgacgt tggggaaagg      3300
     tagcgccgaa tccgagagcg aaaaactgaa tcgtttgcta aaacaggctc taggccccga      3360
     gttaagtgag ggtttggccg atgacgcgag cgccgattat ggggatccga aaaggggttt      3420
     accgacggat cccgagtcga cgggggcggt gcctcgaccc gttccggccg tgaaatgctc      3480
     agtgcgtctg tgggagccta aaacccccct tagtgttgtt tcggaggggg gtgagactga      3540
     tgaagaatca gtacagaacg accctgtagc gaccgataac gtacccccgg tggaggacat      3600
     cgacgcgata gtcgacgaca accgaaaatt catgcgatta tgcctagggg gacgttggta      3660
     tacggctctc gtggattccg gggcatcggt ttcgttaatg aaggctgatg tagccgaacg      3720
     tttcagttcg cgcctggaac cttgcgatac ggtcatccga gggtttaacg gttatagcgc      3780
     cacggtcaag ggagtactca atcggttgaa aattagggtc gtggaacagt gctaccatga      3840
     tattatttta gggatagatt tcctagaaaa atggcgcgtg gaattagccc cgtgggataa      3900
     tcgttggcgc ctgccagatg gaatgtggca cgacttttgc ggaaaggtag catcgaatgg      3960
     caaggaactc tacgccgaat gtgccgggtt atcagaactc acccagtcgg aacatgatcg      4020
     attactagcc gttgtaaaaa gatttttgcc ggaaaacccg ccaactgatt tgaaagcaac      4080
     ctggttgatt aaacataaaa tcgtgtatgt gggaaataaa accgttaaac ataagcatcg      4140
     tcgttggtcg ccggttcgtt gggctatcgc gatgcgcgaa attgaagaga tgcgccgaat      4200
     gggggtaatc gaacgttcaa atagcgactt cagtagcgcc ccggtagtag cgaataaaga      4260
     aggcggggaa aagagatttt gtgtagatta tcgcgacgta aatgacggaa ccgttaaaga      4320
     cgcgtatcca ctaccgccaa tagatagtat tttagataaa ttacgaaatg ctcggtacat      4380
     cacaaagata gatttgcgga aagcctactt tcaagtgccg ctagacgaag atagtaaaaa      4440
     gtataccgcg ttttccatgc ctggatcggg tctatggcaa ttcacgcgaa tgccatttgg      4500
     gttggctaat gcaccggcta cctttcagcg cctggtggat agcttatttg gaccagaatt      4560
     tgagccgtac gtgtttggtt atttggatga tatcattata gtaacagaga atttcgaaga      4620
     tcacctgaaa tgggtggaaa ttgtattaaa gcggattaca gaagcggggt tgaccgttaa      4680
     ccggaagaaa tgtgagttcg gttgttcgca agttaggtac ttgggctatt tgctagacag      4740
     agaagggtta aggcccgatc cagagcgaat tgcgccggtg ttagagtata ctccaccaaa      4800
     aacaaagaag cagttgcgcc gatttctagg aatggtgggg tggtatagtc gttttatccc      4860
     gaatgactcg gaaattaaag tkcccctgtt gaaactactg aggaacacgc aaccgtgggt      4920
     atgggaagag gagcaacaag aagcgttcga ggcgctaaag ttagccttga ctcgcgctcc      4980
     agttctcgcg cgccccgatt ttacgaagag attcacgatt cagtgcgacg cgtccgactt      5040
     cgcaattggc gcggtactca cgcaagagtt tgaagatgga gaacatccaa tcgtgtatct      5100
     aagccgcgta ttatcgccag cggaaaagaa ttacactacg accgagaaag aatgtctagc      5160
     gatgatcttc gcgatcaaga agttgcgtcc gtatattgaa ggatatggtt tcacggtaat      5220
     cacggatcat agcgccttgc gttggctcca aaatctgaaa gacccaactg gccgattagc      5280
     gcgttgggcc cttgagttgc aacaatggga cttcgaaatc gtacatagaa aaggagccaa      5340
     ccatcacgta cccgacgcgt tatctcgtag taagggagaa gacgaagaag tagttagcgc      5400
     ctttgacgta attacggatg agtggtacct tcagcgccgg cgagacgtga ttacgtcgcc      5460
     aaagaaattt agggagtgga aagtcgagga cgagatgcta taccgatacc gccgcgaccc      5520
     attattagac ccgattactc acccgtcaga gggttggcgc ctggtggtgc cgatagaata      5580
     tcgcccccga gttctgagtg acgcccatcg cgaagcttcc tccggtcatt taggagtaga      5640
     aaagacttat gatcgcgtcg cgagagaata ttactggccg ggagtatggc acgatgttaa      5700
     ccactatgta caagagtgcg acgaatgcca gcgttataaa acttcccagt taggaacggc      5760
     cggtcaaatg gggcagagaa ttgttgagcg cccgtgggcg gtagtagctg ccgacctgat      5820
     ggaatttccc acgagtaaga gccaatacaa gtacctgata gttttccaag acttattcac      5880
     gcgttgggtc gaattgaagc caattagaaa agcgacgggt caggcagtag caaaagcatt      5940
     cgaagaatta attttattcc gttgggaaac gccagatttt ctgttaacgg ataacgggaa      6000
     ggaattcatc aataaaactc tgaaggatac cttggaagaa tatggtgtca cccacgtgac      6060
     caccccaccg tatcacccgc aagcgaatcc ggtagagcgg agtaaccgaa ctttaaaaac      6120
     aatgattgcg acgttcgtgg ggaaagatca ccgtacttgg gatcaacatt tgcatgaatt      6180
     tcgtcacgcg gtaaacacgg cgatgcaatc gagtactagg gtttcgccgg cgttcttgaa      6240
     ctatggacgc catccccaac cagttaaaag tttgcgccgg gaggtggaag tmagagggcc      6300
     caaaattgaa ttagaccctt ccgtgtggat agatagagta aaacgtttgg atgctcttcg      6360
     cgatatagta ctgaaacatt tggaccaagc ctggggaaaa caagccgcag tgtacaacca      6420
     aggaaaacgc gtattagaat ttgaggtggg cgacgttgta cgtcggaaag tacattccct      6480
     ctccaaagga gtagacggaa agtgcaacaa gttagacgcg aattatagcg acccgtgcgt      6540
     gattctccag aagttatcgc cactcgtgta tatcctggag acaaaagata agcgccagac      6600
     cgccaaggtc cacttgagcg agttgcgtag gtatgtgcct ccgcgaaatc gtgccgcgaa      6660
     cacgtagcgc ccacaacgaa ggtaggttgt gctgttcttg ttttgtgcca tagcgtcgtt      6720
     gcgtctggtg acgggtatgc gacgacttac tgactccata ctaatggacg ttaaatcccc      6780
     aggaagcaca atgaagaccg tgtcatgggc cgagcacatc gcagagatgg aaagcgagtg      6840
     tgagcgggag ctgcgcgcca tcgaagatca gcgggagaag ctgcgccaga gtcgtccsag      6900
     gaccgacatg actcgggcgg cggagatttg ggcccgtcgg agccccgcgt gccctagcrc      6960
     aagctccatg gaggaagagg agcgctggag tgctggggtc actgacaccc gaatcccccg      7020
     caagaccatg attggcgccg cgggccctct gcccctcacg gaggaggara gagaggccta      7080
     ccagcgggag ggaattcctg tggaggagga gccctccgcc ctcgaggaga gtcgcgccgc      7140
     ggtcgacgag ctggaggcat tggtgggaga tggcgatgat ctcaccatca cgatctccaa      7200
     cgagagggcg gaagcagtgg gggagtaccc tcgacttcga ggtcccaacg gcaagaggcg      7260
     aaaatacaac ccgttgcgcc acctcgagtt gagtcggtgg tggcaggacc atcgcgccac      7320
     cgtgaccact ccccgccggg tccaccaatc cgtcgcgaag ccgtggaggt atgtatacca      7380
     ctccattagc gccacaggtt tccgttgacc ttcgcgacgt ttcaggtgga tattccattc      7440
     tatcagccgc ctcccgcgcc gagaaatgcc cctctcatgc cccgtttgga gattcccggc      7500
     gccgagagcg actcgagcgg gagtccgagt acgggcgcgg tgccccgtcg ctacggtgga      7560
     acgacgaata cgggctcccg ttcgcgttcg tcgcgccgga gagccgcggt acgactcgac      7620
     ggggtcatgt ttggagggct gactcccata gcgacggacc cgactctaga cccgcctccc      7680
     cggacctgtt ttaactgctg gcagccggga caccgccgga caggatgcag agcgccgcca      7740
     agccgtttct gttttaattg tggccggcaa gaaacggact tggcgaactg tccgcggtgt      7800
     cgagacgccc atcgtcggca catgcggcac cagggattta ggccacgggg acggggaaat      7860
     cccaaaggag aggccgggat gccggggaac tgggagtatc cagcccaata cccccaaatt      7920
     gatgcgccgc cagcgtcata tgacgaagca atggccggcc gggaaccgcc ctaccgtcct      7980
     gccatccgca tgccgccgcc tagggacgag agggacgccg gccaataccc tcgaccgctg      8040
     ccgagcctct ggatggaggc actccaccac atcgcgacgg ctccgccgga ggtcctagcg      8100
     ttgctccggt cgcacctgag taacgcctag gactttcctt tctttttttt ttttaataaa      8160
     gataaggatc taaccagtgt gatgattctc gtctcccttg catgagtcac gtaatgtcca      8220
     gattttgtgc cgtctgttga gtcatagcgc cagttcaacc atctcgagcc gtgtgttgat      8280
     gttcaaatta tttacagaaa tgtccaggac ccaaggagtt ccaggacgag gtcagcgccg      8340
     acgtaccctg gcgaggggag cctctccgga atcgcgttgg ttg                        8383
//
ID   Gypsy-38_NVi-LTR repbase;    DNA;    INV; 2302 BP.
XX
AC   .
XX
DT   06-JUL-2009 (Rel. 14.07, Created)
DT   06-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_NVi-LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2302
RA   Bao W. and Jurka J.;
RT   "Gypsy LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1386-1386 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2302 BP; 565 A; 557 C; 623 G; 549 T; 8 other;
     tgcgacgtgt agcctgctcg gctacacgtg tacactagca ctaaattgtc tgcgcaatca        60
     atgttgttcc ctgctgcaat ttatcatgca gcagaggaac aataacattg attgtcgtcg       120
     cgccgaggaa gataacctca cctgccagcc gcatggagca acggtggctc ccctgcaggc       180
     ttggcaggtg actatgccct cacggtagcg ccgccgcgga tcgccaggtg ttgtcggaca       240
     ccgctgtacc gacgcagccg acacgcacct gctcctgttc gcaccaggag tcgcgccgcg       300
     aaacgaagaa gcgagatcgg gacgagcgcg gaamacagca cgaggcggaa tgacgcgtgc       360
     gcatcgccgc cgcgcatatg cgagcgcgcc gcggtagctc ggcggagcga gmgcgcgcga       420
     gmgagagaga gagagakagc gagagagaga gagagagaga gagagagagg ggctcgcgcg       480
     cgaagcccgc atgccgtcgc ggagtcggcg cgactagtgg ggggagcgcg crtacaccac       540
     tagcgcgcac cactaaccga gccatgccac cgcactggcg cagtccagtg cgctagtggg       600
     agtcccgtgc accatgactg cacggtgact taaatttaac tatagcgcca gatgacgcgt       660
     cagagcaatc tgacgtgttc gcgctatctc tctctcgctc tctctctctc tctctctctc       720
     tctctctctc tctattagac gttgatggaa gagagcgttc gtgcggttga cgctggcggt       780
     gtcgcgccgc cggcaattaa tatagagggc gcggattcga gtttccgggt acgcgcagga       840
     cttcgaggac gagagagact tcctcctcgt ccagaatagt ctcaaccgct cgagcgagta       900
     gacgcctcta accagcctag tgcaaccccg agtttcagag taacagagag agagagagag       960
     agtagagaag ccattgagaa ggagagttga ggttccgaag aagaagataa agtaagtcgt      1020
     cgcatattcg gcacggttgc caataattat tgtctaattt atgtggttgt tggggtaatc      1080
     gtcgcgtcgc ggaaataagt gtttttgaca ccgagcgaat actcgtttcg tagcggttga      1140
     gacgcggtcg atccaasagg atcccgccat tttataataa gcgtttgtgc cgctgtcgat      1200
     tgtaaatcaa tccagcatat aawtattggg gaaagagttg agccgctgta gattgcgaag      1260
     caatccagca ccgttatacg gaaagtcgtt gatcgaaatc gtcaagtgta ttgcgttgag      1320
     ccgctgtaga atcgctaagc gatccagcaa ttgttmaggg tattgcgttg cgccgctgtt      1380
     gatcgccaag cgatccagct ttcgaaaaga agaattatcg agccgctgtt gatcaaaaga      1440
     tccagcattt aagagtatcc ttaggttgag ccgccgtcga tctttaagat ccggaaaaac      1500
     acgattttcc cgattaatat ctgcgttgcg tcgtcgccga tcaaaccgtg atcgaagtgg      1560
     ctgtatcgag agtaatttcg cgagtcgtac tcgcgtcatc gcaccttata tatagctgtt      1620
     ttccgttacg ccgtaaaaac gttccgttat tgcggtggtt tatcgcgacg ttctatgatt      1680
     ttcgcgcgtt tcagcaagga tccgtacaga tacgaagtgg caccgagcgt ccgatgacca      1740
     gccctaatcc aggagtaaat caaaacggaa aacgccatct tggaggacgc cgcgtccttt      1800
     gatcgcgacg ccgacgccat tttgggcgaa cgaataacga atcttagagt cacgaaagcg      1860
     cggtttattg tttcgcgtcc gttgatttca aggagtattt cgttaccgtg tcgtagagtc      1920
     aataatcggt tattatcgtg tcaccaaatc cattgtcggt tgaccaagga tataagtctg      1980
     aattgtttat tgttaaatgc gttattattt gcgtaacatc gcgccttgag tctgagttga      2040
     tttattacgg ggaaatcttg taatcagacc aagtctgatc catactgggg gttgaagaat      2100
     acatcgtatt gttattgttc agcataaacc gttgtgtatc aagctttatt tttgaacctc      2160
     taccacgcca ggctctcctg tcctaaaacc tacacgttgt ccccctctgt agatgtaaga      2220
     gtccgcggta cgaacatcaa gtagaaaata gtgtaaactg attgtttgcg tcaccgaagt      2280
     cggttataaa aacgcaacat ca                                               2302
//
ID   Gypsy-38_SiCu-I repbase;    DNA;    INV; 4291 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5060-5060 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           164..4276
FT                 /product="Gypsy-38_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MATVGNLKPFDPSVDDVEIWIRAFKSFLLANDMDPAP
FT                 PADMKDADAVKMYNRCRAVLLSSLGLSAVATLTSLLSPVLPEDKDLDGLLK
FT                 ELTAHYKPPPKALAERYRFTSRTQQQAESVSHYLAELRRLASTCKFEAELE
FT                 NRLRDQFIFGLRNEAAQKQIFTKXDNISLDDVVTLAVAQELSEQSLSVVRG
FT                 GSSHHPQDNXEVNKVNKNTSSKNKFQQHGKKSXGQQQNQHXNSQSKCPNCG
FT                 SSSHKRKDCPHTNVECYNCHKLGHFASMCRGQKKNSKNHQSKQQQSQSSTN
FT                 TVDILSASVHQSADSKSEDKIWITLEINGKSHAMEYDTGCQNAMLSAEFYR
FT                 DVLGAPPLQRGVTTFKTYTNQLFKSIGQLQVKCKYNGQVIDHTFPVVEGQS
FT                 LFGRNLMRKLKIDWTDIAAQCNQVESMNLNSILEEFKDIFSEPSGRINNFK
FT                 ARIILKDDAVPKFMKPRPIPYALQEKVDRELDLMEKSGVIERVEHSEWASP
FT                 LVVVPKPNGRVRITGDFKNTVNSQLHVTQYPIASPERIFHAVSGCQKFSKL
FT                 DGSNAYHQMELEEDCKQFLVVNTHRGLYRYNVLPQGIASSPAIFQQFSDIM
FT                 LQGVTQTGTYIDDVLSAGKSDIESLKLLREIFLRMRKYNYYLSKDKCEFLK
FT                 DNVEFLGHILSKRGIHTSPRKIAAIEAIQPPKDANELSSFLGLVNFYSKFV
FT                 DNFASFCQPLYRLTRSSVQWQWSKQCSSAFNRVKSALSSAPILVHFNPKMT
FT                 IGVSADAASGGLGSVLFHRFQENGKQVEKPIAFASRVLSDCEKNYSQIEKE
FT                 GLAIIFSLQKFYKYLCGRKFVLVTDHKPLLAIFGPKTALQPYAAARLHRWS
FT                 VYMSQFEYDIEYRSTNDHGNADALSRLPLSVLSEDEEAKEVNLIAHENLQV
FT                 MPVTAKEVRNATAKDKVLSRVLSFIHSSWPSKKEEENSDLQQFFKKKEELS
FT                 TDQGVILWGLRVVIPAALRSKLLASLHESHAGIVKMKALARQHMWWPDMDK
FT                 DIESLAKSCIDCCSSRSDPPSAPLHPWQFPEKAWQRLHIDLAGPLFGKMFL
FT                 VVVDAHSKWPEVYDMNTSTTSSSVITKLRDCFTHFGLPEQLVSDNGRQFVS
FT                 EEFQQFCKNNGIRHIRSSAYHPRTNGEAERFVQTFKRAMKNSQGDLTYRMQ
FT                 RFLFSYRSTPHATTAVSPSELLLGRRLRTLLSLMKPNVNSTVAASQARQEK
FT                 SYNSHVKSRSFEEEEEVWVKTYSKNEAKWSLGKILKSLGPVTYLVDVGGQK
FT                 YKRHVDQIYPAMKLSLGKVDSKPKHPAITPKKEKASPKPTALESPKRRPLS
FT                 EGATPPMSPTKESFSDSPDSPDVFQDATEQPPDPSPVREPTPPRRSARQKK
FT                 KPDRFQSI"
XX
SQ   Sequence 4291 BP; 1284 A; 1008 C; 960 G; 1025 T; 14 other;
     tttctggcga cgaggataaa agcgaataaa aacagttgtg aaagaccgat aaaagactaa        60
     aaacagttaa tagtcagcgt tcagtgaaaa aaagtatttt ttctccaagt taactttctc       120
     gtgtgttttt ctccaagttt gtttatttcc agtgagtcaa gtcatggcca cagtaggaaa       180
     tttgaagccc ttcgacccat cagtggacga cgtggagatc tggatacgag catttaagtc       240
     atttctactg gcaaatgaca tggatcccgc tccacccgcm gacatgaagg atgcagacgc       300
     agttaaaatg tacaaccgct gccgtgcagt cctcctgtca agtcttggtt tgtcagcagt       360
     tgccacgtta acatctctac tttcaccagt acttcctgaa gataaggatc tggacggatt       420
     gctgaaggag ttaactgcgc actataaacc acccccgaag gcactagcag agagataccg       480
     gttcacaagt cgcacacaac aacaagcaga gtcagtttct cattacttgg cggagctcag       540
     gcgtctagcg tcwacctgta agttcgaagc agagctmgaa aacmgattac gagatcagtt       600
     tatctttggt ttgaggaatg aagcagcgca gaagcagatt ttcaccaaas cmgacaacat       660
     cagtctcgat gacgtcgtca cccttgcagt cgcccaggag ctttccgagc agagtttatc       720
     tgttgttcgt ggcggatcat ctcatcatcc ccaggacaac gmmgaggtca acaaggtgaa       780
     caaaaacacc tcatcaaaaa ataaatttca gcaacatggg aagaaatcac awggacagca       840
     gcagaatcag catcamaatt ctcagtccaa gtgtcccaac tgcggttcct catcccacaa       900
     aaggaaggat tgtccwcaca caaatgtcga gtgctacaac tgccacaaac tcggacattt       960
     cgcatccatg tgtcgtggac agaagaaaaa tagtaaaaat catcagtcaa aacagcagca      1020
     gtcccagtca agcaccaaca cagtggatat cctgtcagcg tccgtacatc agtcagccga      1080
     ttcmaaatct gaggataaga tctggatcac tctagagatt aatggcaagt cacatgccat      1140
     ggagtatgac accggatgtc agaatgcgat gctgagcgca gaattctaca gagatgtgtt      1200
     aggagcaccc cctctccagc gtggcgttac wactttcaag acgtacacca accagttgtt      1260
     caagtcaata ggacagctac aggtcaaatg taagtataat ggtcaagtta tagaccatac      1320
     atttcctgtt gtcgagggtc aatcattatt tggtagaaat ttaatgagaa aattgaagat      1380
     tgattggact gacattgctg ctcaatgtaa tcaagttgaa agcatgaacc tcaacagcat      1440
     tttagaagag tttaaggata ttttttccga gccaagtgga cgcatcaaca actttaaggc      1500
     magaatcatc ttaaaggacg atgccgttcc aaagtttatg aagcctcgcc ccattccata      1560
     cgcactacaa gagaaagtag atcgcgaatt ggatctcatg gagaaatctg gcgtaatcga      1620
     gcgagtcgag cacagcgagt gggcgtcacc gttggtcgtc gtgccaaagc cgaatggtcg      1680
     tgtaaggatc actggggatt tcaagaatac agtgaactcc cagctacacg ttacccagta      1740
     ccccatcgcc agcccagaaa ggattttcca tgccgtgtca ggatgtcaga agttttccaa      1800
     attggatggc agcaacgcct atcaccaaat ggagttagaa gaagactgca agcaattctt      1860
     ggtcgtgaac acgcacagag gattgtatcg ttacaatgtc ctcccacagg gcattgcatc      1920
     atcaccagca atcttccagc agttttctga catcatgtta caaggagtaa cacagacagg      1980
     tacctacatt gacgatgtcc tctcagctgg taagagcgac atagaaagtt taaagttgtt      2040
     acgtgagata tttttgcgta tgcgaaaata caactattat ttgtcaaaag ataagtgtga      2100
     gtttttgaaa gacaatgtag agtttcttgg acatatcctg tccaagagag gcattcatac      2160
     cagtcccaga aagatcgctg ctatagaggc tatccaacca cccaaagacg cgaatgaatt      2220
     gagttcattc cttggtttgg tcaattttta ttcaaaattt gtggataact ttgctagttt      2280
     ttgtcagcct ctttacagac ttaccagaag ttcagtgcag tggcagtggt ccaagcaatg      2340
     cagtagtgca ttcaatcgtg ttaaaagtgc cttatccagc gctccaatct tggttcactt      2400
     taatcccaag atgacaattg gagtgagcgc cgacgccgcc tctggagggc ttggttcagt      2460
     attgtttcat cgcttccaag aaaatggaaa gcaagtcgag aagccgatcg cgttcgcttc      2520
     cagagtcctg tcagattgtg aaaagaatta ttcacaaatc gagaaggagg gattagccat      2580
     catcttttct cttcagaagt tttacaagta cttgtgtgga cgcaaattcg tacttgtaac      2640
     agatcacaaa ccgttactgg caattttcgg accgaagaca gctctacagc cgtacgcagc      2700
     agcccgtctt caccgttgga gtgtttacat gtcgcagttc gagtacgaca ttgaataccg      2760
     gtcaactaac gaccatggga acgcagatgc cttaagccgt ctccctctgt ccgtcttatc      2820
     agaagacgaa gaagcaaaag aagtcaatct catcgctcat gagaatttgc aagtcatgcc      2880
     agtaacagcc aaggaagtcc gaaatgcaac agcaaaagat aaagtacttt cacgtgtact      2940
     ttctttcatc cattcatcat ggcccagcaa gaaagaagaa gaaaattcag atctacagca      3000
     gttttttaag aagaaagaag agctcagtac cgatcaggga gtaattttat ggggattacg      3060
     agtggtcatc ccagcagccc ttcgttcaaa attactcgcc agtctgcacg agagtcatgc      3120
     aggcatagtc aaaatgaaag cgctggcgcg ccaacacatg tggtggccag acatggataa      3180
     agatatcgaa tctttagcca aaagttgtat tgactgctgt tcgtcaagat ctgatccgcc      3240
     cagtgcccct ttgcacccgt ggcagtttcc cgagaaggct tggcaacgtc tccatatcga      3300
     cctggcaggt cctctttttg gcaaaatgtt cctggttgtc gttgatgctc attcgaagtg      3360
     gccggaggtc tacgatatga acaccagcac caccagttcc agcgtcatca caaagttacg      3420
     tgactgtttc acgcactttg gcctaccaga gcagctcgtg tcagataatg gaagacagtt      3480
     cgtgtcagaa gagttccagc aattttgcaa gaacaatgga attcggcaca tccgcagctc      3540
     agcctatcat ccccgcacaa atggagaagc agagcgcttc gtccagacat ttaaaagagc      3600
     catgaaaaat tctcaaggtg acctaacgta tcgtatgcaa cgttttttat tcagttacag      3660
     gtccaccccg cacgcgacga cagctgtttc accatcagag ttactgttgg gtcgtcgtct      3720
     tcgtacttta ctcagcctca tgaagcccaa cgtcaacagc acggtagcgg catcccaggc      3780
     aagacaggag aaaagttaca atagccatgt caagtcaaga tcttttgagg aggaggagga      3840
     agtttgggtc aaaacctaca gtaaaaatga agctaagtgg tctttgggaa agatcctgaa      3900
     gtccctgggt ccagttacct acctcgtgga tgtcggtggc cagaaataca aacgtcatgt      3960
     ggatcaaatt tatccagcaa tgaagctcag ccttggcaaa gtggacagta agcccaagca      4020
     ccccgccatc acacccaaga aagagaaagc atcacccaaa ccaacagcat tggaatctcc      4080
     aaaacgtcga cccttatcag aaggggccac tcctcccatg tcgcctacca aagaatcatt      4140
     ttcagattct ccagacagcc cagatgtgtt ccaggacgct acagagcagc ctccggatcc      4200
     ttcgccagtt cgagagccaa ctccaccgag aaggtccgcc agacagaaga aaaaaccgga      4260
     ccggttccaa tcaatttaaa ggggaagaaa a                                     4291
//
ID   Gypsy-38_SiCu-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-280
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5115-5115 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 280 BP; 79 A; 59 C; 46 G; 94 T; 2 other;
     tgtggtgttt ggtstccata aagtagtatc actttaccca agtaatgttg ttcctaaaag        60
     taatagttca agttgtgtga gcacgctgta tcctagatgt ttgcgctgct cacgttgtct       120
     ttagttcact tgcccatccg gcagaaccga agcagacttt cactgcatca cactctcttg       180
     ttattctctc tcattcataa ttaaataaag ttaactaatt cggtcattaa agataaccag       240
     cagttacctm aaggtttatt atcatacact gaacataaca                             280
//
ID   Gypsy-38_SiOr-I repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4117
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 372-372 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..4106
FT                 /product="Gypsy-38_SiOr-I_1p"
FT                 /translation="MATMGMVKLPPDFDLQGQNAAGEWKFWKTAFEDYLVA
FT                 IGQDKAAGLVKLSILRNIIGTESARIMSTFVIPEDQQDKYEYMLELITKYV
FT                 NPRINECFERYNFLKRVQKEGETFEHFLTECRHLVKSCNYNTIDPNQTSED
FT                 KALRDKIVMGIRDPTTREALLRLDELTLDKTINFCRTSEQSRNQSIKFQEG
FT                 EEEVNFIKKYKKPGEKKRQKSEQQDAKDKFKCKRCQNMHGPRECPAYGKKC
FT                 RKCGLLNHFAISCRIKNVKNVEEKCDTSEENLFVGNISKDIPSNKSNSTSN
FT                 NYRNPTNIWEEFIHVENKRCKVRLDTGADVSVIPSTLFNCINKKFKVRDTH
FT                 CILKGFEGSQVKPIGIVNLYCKYKSVEMYEDFVIVEGANQVLLSGLACVKL
FT                 QLVKRVNNISVTENGLNDREKFINKNFEIFSGYGKFPGKYNITTVENFEPV
FT                 SYPPTKVPITLRNELKNEIXRLIKRNAIVKVDEINSNASINRMVIVEKTNG
FT                 KLRLCLDPSDLNRQIVRKPKIACNIEEICANLNGKKIFTVFDLAEGYHHLE
FT                 LTEEASWKCFATPFGIYRFTVLPYGLSNSQDLFQDVVEREFGSIKNVQICH
FT                 DDMIVAGATREEHDQAVSEVVKKAKEVGAKFNKEKLQYCQSQVKFMGQMFS
FT                 ESGMQIDPDRIESLCKLEIPKNKNELQRIIGSFNYVRRYIKNMAEYMHLLC
FT                 ELLKNNIEWQWLPAHQKAFDTLKKIICNSPGLTPFDYKRKIILQCDASKNG
FT                 LGCCMFQQYENNIVKLVSCASRMMNEHEVNYSQTEKELLAIYFATQKFHDF
FT                 IYGRNFDVQSDHKPIVSIMKKPICKIGSVRLQRIRLKLLKYNINVYYVPGK
FT                 SIHFADMLSRSSLKSTGKIDNEMFEMVHSVSKHIPMSNEKRDEFRIETCKD
FT                 KTLMKLYDYYYNGWPKTSSIPPDCLPYVQSKNSIYIESGIIFLNDKVIVPT
FT                 SLRVKMCELLHKGHIGTSKTIHKARLLFYWPNLSDDIINYIKKCRVCEKYR
FT                 PANYREPLLPHTVPKLRFNKIGADILEFGCKSYLVVIDHFSHWIECILLKD
FT                 KTAESVINAFQEIFIRFGYPTYIIADNLPFISSRLKKYYRAKDITIKTCSP
FT                 HYHQSNGLAEKAVNICKQMIKKSLDENSDFRESVMEYNNSPIINLNASPAQ
FT                 ILQSRILKSQLPLSDAKLQPRIQNNIYKQLCKQKDKVKIQYDKMVRRYPFE
FT                 YKKGDKVVIRSNIDKIWYKATILEKANEPRSYWVRKEDNNRIVRRNTSQIK
FT                 LSFTEPEKKVLTEPELFPELLSIPNMSSNPIMSLNPNVSVEQNENVNVDLR
FT                 NKVIKSRSGRNIKPPRKLDL"
XX
SQ   Sequence 4117 BP; 1607 A; 542 C; 762 G; 1204 T; 2 other;
     tggcgcagtc gtaaatcgta agtcgtaagt acgtaattga aggcagttaa aagtatttac        60
     aaaagtatca agtcttttaa gtataaaaaa gtcgatcttg agtgtaaaag atggctacca       120
     tgggcatggt aaaattaccg ccagattttg atctgcaagg gcaaaatgct gcgggagaat       180
     ggaagttttg gaagacagct tttgaggact atctagttgc gatagggcag gataaagctg       240
     caggactggt aaaattatcg attctgagaa acattattgg caccgagtcc gccagaataa       300
     tgtcgacctt tgtgattccc gaggatcagc aggataaata tgaatacatg ttggaactta       360
     taactaaata tgtaaaccca aggataaatg aatgttttga aagatataat ttccttaaac       420
     gagtgcaaaa agagggtgaa acgtttgaac atttcttaac tgagtgtcgt catctggtca       480
     agagctgtaa ttacaatact atagatccaa atcagacaag tgaagacaag gctttgagag       540
     acaaaattgt aatgggaatt agggatccaa caactagaga agcgttgctt agattagatg       600
     agttaacact cgataaaact ataaatttct gtagaacaag tgaacagagc agaaatcaaa       660
     gtattaaatt ccaagaaggc gaagaagagg taaattttat taaaaaatat aagaagccag       720
     gcgaaaagaa aagacaaaaa agtgaacagc aagatgcaaa ggacaaattc aaatgtaaaa       780
     ggtgtcaaaa tatgcacggt cccagggaat gccctgctta tggaaaaaag tgtaggaagt       840
     gcggattatt aaaccacttt gctatatcgt gtcgcataaa aaatgtaaaa aatgttgaag       900
     aaaaatgtga tactagtgag gaaaatttat tcgtaggtaa cataagtaag gatataccct       960
     cgaataaatc taattctaca tctaataatt atagaaaccc aacaaatata tgggaagagt      1020
     tcatacatgt agaaaacaaa agatgtaaag ttaggttgga tacaggggca gacgttagtg      1080
     taataccatc aacattattt aattgtataa ataaaaaatt taaggttagg gacacacatt      1140
     gtattttaaa aggatttgaa ggttctcagg ttaaacccat tggtattgta aatttatatt      1200
     gtaagtataa aagtgtagaa atgtatgaag actttgtcat agttgaggga gcaaatcagg      1260
     ttctattaag cggtttagct tgcgtaaaat tacaattggt gaaaagagta aataatattt      1320
     cagttactga gaatggttta aatgataggg aaaaatttat aaataagaat tttgaaattt      1380
     ttagtggtta tggtaagttt cctggtaaat ataacataac aacagtagaa aattttgaac      1440
     cggtcagtta cccccctact aaagtaccaa ttacattaag aaatgaacta aaaaatgaaa      1500
     tasatagatt aataaaaagg aatgcaattg taaaggtaga tgaaataaat tcaaatgcaa      1560
     gtattaacag aatggtcatt gtagaaaaaa caaatggtaa gttgagactt tgtttagacc      1620
     cttctgattt aaatagacaa attgtcagaa aacctaaaat agcatgcaac atagaagaga      1680
     tttgtgcaaa tttaaatgga aaaaagattt tcactgtttt tgatttagct gaaggttacc      1740
     accatttaga gttgacagaa gaagcttcat ggaaatgttt tgcaacacca tttggaatat      1800
     ataggtttac agttctacct tatggtttgt caaattcaca agatttattt caagatgtag      1860
     ttgaaagaga gtttggtagc atcaaaaatg tgcaaatttg tcacgatgat atgatcgtag      1920
     caggagcaac aagagaagag catgatcagg ccgtatcaga ggttgtgaaa aaagccaagg      1980
     aggtaggtgc aaaatttaat aaagaaaaat tgcaatactg tcagagtcag gtaaagttta      2040
     tggggcaaat gttttctgag tcaggaatgc aaatagaccc tgatagaatt gaatctttat      2100
     gtaaactaga aattcctaaa aacaaaaatg aattacaaag gattattggt tcttttaatt      2160
     atgtaagacg atatataaaa aacatggcag aatatatgca tctkttatgt gaacttttaa      2220
     aaaataatat agaatggcaa tggttaccag cacaccaaaa agcttttgat acattaaaga      2280
     aaatcatttg taattcacca ggcttaactc cgtttgatta taaaaggaaa ataattttac      2340
     aatgtgacgc atctaaaaac ggtttaggat gttgtatgtt tcaacaatat gaaaataata      2400
     tagttaaatt agttagttgt gcatcacgta tgatgaatga acacgaagtt aattatagtc      2460
     aaacagagaa agagctttta gccatttatt ttgccacaca aaaatttcac gattttatat      2520
     atggaagaaa ttttgatgtt caatcagatc ataaacctat agtgtcaatt atgaaaaaac      2580
     ctatttgtaa aattggttca gttagattac aacgtattag attaaagtta ctaaaatata      2640
     acatcaatgt atattatgta ccaggtaaaa gcattcattt tgctgatatg ctttcgcgat      2700
     ctagtttaaa gtcaacaggt aagattgata atgaaatgtt cgaaatggtc cattcagttt      2760
     caaagcatat tcctatgagt aacgagaaac gagacgaatt tagaatagaa acgtgtaaag      2820
     ataaaacttt aatgaaatta tatgattatt attacaatgg atggccaaaa acaagttcca      2880
     ttccacctga ttgtttacca tacgtacaat caaaaaattc tatctatata gagagtggta      2940
     tcattttctt aaacgataaa gtaatcgttc ctactagtct gcgtgtaaag atgtgtgaac      3000
     tgttacataa gggacacatt ggaactagta aaacaattca taaagcgaga ttattatttt      3060
     attggccaaa tctgtctgat gatataatta actatataaa aaaatgtcgt gtttgtgaaa      3120
     aatatagacc tgcaaattat agagaaccac ttttaccaca tactgttcct aaacttcgtt      3180
     ttaacaaaat aggagctgat attttagaat ttggttgtaa atcatactta gttgtaattg      3240
     atcatttctc tcattggata gagtgtattt tgctaaaaga taaaacagca gagtcagtta      3300
     taaatgcatt tcaagaaata tttataagat ttggttatcc aacgtatatc attgctgata      3360
     atttaccttt tatttcaagt cgtttaaaaa agtattatcg agcaaaagac attacaataa      3420
     aaacatgttc tccacattat catcaaagta atggtctagc cgagaaagca gttaatatat      3480
     gcaaacaaat gataaagaaa agtttagatg aaaattccga ctttagagaa tctgttatgg      3540
     aatataacaa ttcacctatt attaacttaa acgcgtctcc agctcaaata ctgcagagca      3600
     gaatcttaaa atcacaacta cctttaagtg atgcaaaatt gcaaccgaga attcaaaata      3660
     atatttataa acagctttgt aaacaaaaag ataaagttaa aatccaatat gacaaaatgg      3720
     ttcgcagata tccttttgag tataaaaagg gagataaagt agtaatcaga agcaacatag      3780
     ataaaatctg gtataaagct acaattctgg agaaagctaa tgaaccaaga tcttactggg      3840
     tacgaaagga ggataacaac cggattgtta ggcgtaatac ttctcagatt aaattgtcat      3900
     ttacagaacc agagaaaaaa gtccttacag aacctgagtt gtttcctgaa ctattgtcaa      3960
     ttccaaatat gtcatcaaac ccaattatgt ctttaaaccc aaatgtgtca gttgaacaaa      4020
     atgaaaatgt taatgtagat ttaaggaaca aagttattaa gtcgcgttcg ggtcgtaata      4080
     ttaaaccccc taggaagctc gacctttgag gggaagg                               4117
//
ID   Gypsy-38_SiOr-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-210
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 406-406 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4 or 5-bp TSDs.
XX
SQ   Sequence 210 BP; 65 A; 34 C; 29 G; 82 T; 0 other;
     tgtttgaata tggactttat aatgttccgt cttacgtgcc tgtagccacg acctgttaga        60
     cagatgtcat tcagacatgt tgttgtcctt gtctattatc taattataag ttgatatgtt       120
     ttgttaattt actttcactt taatatacgt ttattaaaat tagtaagacc ttcatttagt       180
     acataaatat aaaccccaaa acgtaaaaca                                        210
//
ID   Gypsy-38_SpEx-I repbase;    DNA;    INV; 6917 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6917
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4107-4107 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           372..1631
FT                 /product="Gypsy-38_SpEx-I_1p"
FT                 /translation="MAHLDHIFKALRLVPEFDGNVNVLTRFIRLCDELIDE
FT                 FVTKLETPNKLHEIALINGILNKVTGPAARLINSNGVPSDWLGIRKALVNN
FT                 FSDQRDETALYNDLALLSQGSDSPQEFYERCQNIFSTLMTYVTLHENLATT
FT                 VDAKRDLYKKLTLQSFVRGLRDPLGSRIRCMRPESIEKALEYVHEEQNVVY
FT                 LQQRNSQIPDKKLTQQATSHKLPHNQNSNLPPPKPFTFNMPGPSRHSFGQP
FT                 MMSQGPPQWRPNFNHQTQPGLSRTQQMFRAAPNNYNQNNAFRFPPRNTAPQ
FT                 GNPQQQRPMSGVSHFVSKPLPPTNAMKGHDWSRSGNPPPSNYFKSREMNFN
FT                 DCSDYYGYDDYYSGSYSYYEPYSDYYAENYYSDYDQVCYQQPEIAYDVATE
FT                 DSNEPAGPSGTNSEDFQMVQKSDKPK"
FT   CDS           1592..5230
FT                 /product="Gypsy-38_SpEx-I_2p"
FT                 /translation="RGFSDGSKIRQTKIEVNLQTQRTLPYLQIKDPPLKLL
FT                 IDTGANESFICPSALETYFSNVELKYDPVEVCNVHAATRSDYSITIPCFPE
FT                 INDKDDVTLFVYKFHDYFDGLIGSNLLDKWEATIDFKTKSLITKNASNPIQ
FT                 VYDSRNANLYEGIIPANSSKLVRLPVNSQDGEVIIPEQVISNCHISECLTT
FT                 VKNHRGIVEVSNPTRNDVIFSMDRPVCAQLYNHECKRTEQVPQRVKEVLSR
FT                 LRTSHLNEEERINLELLCSRYADVFYLEGENLTFTNQIKHSIKTTDEVPIH
FT                 TKSYRYPFVHRQEVQEQISKMLAQGIIRPSDSAWSSPIWVVPKKADASGKT
FT                 KWRVVIDFRKLNEKTLDDKYPIPNIADILDKLGNCQYFTTLDLASGFYQVE
FT                 MDPKDIPKTAFTVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLKDLQNNICL
FT                 VYLDDVIVFSTSLQEHMVNLEKVFNRLRESNFKIQMDKSEFLKLETAYLGH
FT                 VISKDGIKPNPDKISAIKNYPLPKTPTEIKRFLGLLGYYRKFIPDFAKVTK
FT                 PLTQCLKKGSKITLDQNYIQCFEKCKTLLVNDPILKYPDFTQEFILTTDAS
FT                 NLAIGAVLSQGTIGSDKPIAYASRTLNTSEINYSTIEKELLAIVWATKYFR
FT                 PYLFGRKFKIVTDHRPLQWVMNIKEPNSRLTRWRLKLSEFDFSVVYKQGRY
FT                 NTNADALSRIELHNEETSSLIANPTEKPPSLDNSRTATVHTDAENPILEIP
FT                 ISDFPLNKYHKQIVFTVVDDVKSRPSVSKPFESHVRTHIQISKNNLEEDIV
FT                 NAVKEYVSPKVKTGILIKPALAMYEIIPVIQNQFKSSSMDLVLTKVELDNV
FT                 KDYLKQQEIIRNYHEGKTNHRGINECYMSLSSKYYWPKMKEHIMKYINECN
FT                 ICGQAKYDRNPVKQKFHIVPPPTRPFEIVHLDLLSVETHKYLTIIDAFSKY
FT                 AQAYHLKDATAISVIQALLVFSTHHGIPLTIVTDRGPEFTNQLFLEFVRIH
FT                 KIQHHKILAYTPNENGMVERLHSTLLEHLRVLKLEHRGESVINLMPYAILG
FT                 YNSSIHSFTKCKPLDIITGHLDPRDPLDINVSDNILQLYSQEHRNKMQKVY
FT                 EIINESSLHDRTRITENINKDREPEQEYSPNQQIFVRNPMANRQKLAPRFT
FT                 RDTVLADLPIHIYTKKKRGPVAKSRLKRVPNSSRLLQDNSVDPEPGPSGRD
FT                 NIK"
FT   CDS           5265..6899
FT                 /product="Gypsy-38_SpEx-I_3p"
FT                 /translation="MLGKAKIISHYHSFIQPVKLDVMRKNIDVVKKQLDYI
FT                 TPEFHNKTLSLYEPHLEHLNSKISLLSDQLELFQSNRVKRGLIDGLGSVIK
FT                 SISGNLDYSDAIRYDNAIKTLQEDDNKIVTELNNRVSLNKHWMSENSDILH
FT                 RLIENQNKIKDTVDSISTSNLRSEQDIVKYAHLAQFLLMLGDNIETLSDEL
FT                 LRLENLLAFIRAKSTHFLMFKLDMFNRMIEQLIALYGREQVLDIRFREYFD
FT                 IIKLGYYYSSQNLILVFKLPVVFPSTYDLYKLSIIPNKDNKVLIPSYPLLA
FT                 IHDKDFMYIEAECPKSSQYYLCEDNINHRYRNQGNCIHHLITTQQVDESCH
FT                 FTTAQLKTEAVEALDDRHYVVSFPAPTKIRLSCSETQYNIVQGSYLITIPK
FT                 GCVAQTPAFTLANKNDRIKGQVLKIMNIPFQDEAIYNLEARKLTLNSADLR
FT                 SLHVATQEISMETPLKINQTDIHSVYYTITPLYLVLLGASALGIGYAIRRY
FT                 LNQRSLKTTTEHQTNEIESGEVYAEINQHTPAPQPRLSALLSNLSNNSR"
XX
SQ   Sequence 6917 BP; 2252 A; 1462 C; 1323 G; 1880 T; 0 other;
     ggcgcagtcg gtaggatacc cgaaatatat tcggtacgtg tcgcgtcaag atttccccta        60
     aaatcggacc ggagtcccgc gcgactgacc gatttcgagt atccgaatct acacgtcgag       120
     accagcagca gcaggggtat ccgagcatcg atacgagcag aaaggccgaa atgaaactgt       180
     gagtacacta aaatctttta gtggattgct catcctttat cttttaagct atcctgtctt       240
     taaacttttc caagattttc catccgagag aatcccggag tgttagggta gagagtaggc       300
     agagtagtag aaatagtgct ttagacttaa atagagagtt aaattcgagt tgtgatttaa       360
     gtgaagataa aatggcccat ttggaccata tatttaaggc tcttagacta gtacccgaat       420
     ttgacgggaa tgtgaatgtt ctaacgagat ttattcggtt gtgtgacgag ttaattgacg       480
     agtttgtaac gaaacttgaa accccgaata aactgcatga gattgctcta attaacggaa       540
     tactaaataa ggtaacaggc cccgccgcac gtttgattaa ctctaatggt gtcccatcag       600
     attggttagg catacgtaaa gctcttgtca ataatttttc cgaccaacgg gatgaaaccg       660
     ctttatataa cgatctagcg ctattatccc aagggtccga cagccctcaa gaattttacg       720
     agcgttgtca gaacatattt agcacactaa tgacatatgt cactctgcat gaaaacttag       780
     ctacaactgt cgatgcaaag cgggaccttt acaagaagtt aaccctacaa tcttttgtac       840
     gcggccttag agacccgtta gggtcacgta tccgttgcat gagacctgaa agtattgaga       900
     aggcgttgga atatgttcat gaggagcaaa acgtagttta tctacaacaa cgtaacagcc       960
     aaattcctga taagaaatta actcaacaag ccacgtcaca taaactacct cataaccaaa      1020
     attccaatct tccgccacct aaaccgttta catttaatat gccgggacct tcaaggcatt      1080
     ctttcggaca gccgatgatg tcacaaggac ctccgcaatg gcgacctaat tttaaccatc      1140
     agacccagcc tggtctatca cgcactcagc aaatgttccg tgctgcacct aataactata      1200
     atcagaacaa tgcatttaga tttccgcccc gtaacacggc accgcaaggc aacccgcaac      1260
     agcagcgacc tatgagtggt gttagccact ttgtgtcaaa accattgcca cccactaacg      1320
     ctatgaaagg acatgactgg tctaggtcgg gtaacccgcc gcctagcaac tactttaaat      1380
     caagagagat gaattttaat gattgttccg attattacgg ctatgatgat tattatagcg      1440
     gtagctattc ttattacgaa ccttacagtg attattatgc tgagaactat tattctgact      1500
     atgatcaagt gtgctaccaa caaccggaaa tagcgtatga tgtagctacc gaggactcta      1560
     atgaacccgc gggcccttca ggtacaaata gcgaggattt tcagatggtt caaaaatcag      1620
     acaaaccaaa atagaggtca accttcaaac ccaacgcaca ctaccatatc tgcaaatcaa      1680
     ggacccccct ctaaagcttt tgattgatac aggcgctaac gaatctttta tttgtcctag      1740
     tgcattagaa acttatttct ctaatgttga attgaaatat gatccggttg aagtttgtaa      1800
     tgtgcacgcg gcgacgcgta gtgactactc gataactata ccgtgtttcc cagaaataaa      1860
     tgataaggac gatgtcacac tattcgtcta taagtttcac gattatttcg atgggttgat      1920
     cggatcgaat ttattagata agtgggaagc tactattgat tttaagacta aatccttaat      1980
     tactaaaaat gcatccaacc ccatacaggt ttatgactcg cgaaatgcta atttatatga      2040
     aggaataata cctgccaatt cttccaaatt agttaggtta ccagttaatt ctcaagacgg      2100
     ggaagttatt attccagagc aggttatttc aaactgtcat attagcgaat gtttaactac      2160
     cgtaaagaac cataggggca tagtggaggt gagtaacccc actcgaaacg acgttatatt      2220
     ttctatggac cgcccggtgt gtgcgcaact ttataatcac gagtgcaagc gcaccgaaca      2280
     agtgccccag cgcgtaaagg aagtactatc gcgtttgcgc actagtcact taaatgaaga      2340
     ggagcgcatt aatttggaat tactatgctc gcgttatgcg gacgtatttt atttagaggg      2400
     cgagaactta acatttacta accaaatcaa acactctatt aaaacaaccg atgaggtacc      2460
     tattcacact aaaagttatc gctatccttt tgtgcatagg caagaagtcc aagaacagat      2520
     tagtaagatg ttagctcaag gaataatccg accatccgat tctgcgtgga gctcacctat      2580
     atgggtcgta cccaaaaagg ctgatgcttc gggcaagact aaatggcgag tagtgataga      2640
     tttccggaaa ttaaacgaaa aaactttgga tgataaatac cctatcccga acattgcaga      2700
     tattttggac aaattaggta attgccaata ttttaccacg ttagatttgg ccagcggctt      2760
     ttaccaggtg gaaatggacc ccaaggacat tcccaaaact gcgttcactg ttgagcatgg      2820
     ccactttgag ttcttgagaa tgccaatggg tttaaagaac agtccatcca ctttccaaag      2880
     ggtcatggac aatgtgttaa aagaccttca aaataacata tgcctggtct atttagatga      2940
     cgtcatcgtt ttctccacgt cattacagga acatatggtc aacctggaaa aagtatttaa      3000
     cagattgcgt gagtccaact ttaaaatcca gatggacaag tccgagtttc tcaaactcga      3060
     gacggcttat ttaggtcatg tgatcagcaa agacggaata aagcctaacc cggataaaat      3120
     atcggcaatc aaaaattatc cgcttcctaa aacccccact gagattaaga gattcctagg      3180
     acttcttggc tactatagga aatttatacc ggattttgcg aaggtcacaa aaccgttgac      3240
     tcagtgttta aaaaaaggtt cgaaaattac actagatcaa aattatattc aatgtttcga      3300
     aaaatgtaag actcttttgg ttaatgatcc tattctaaaa tacccggact ttactcaaga      3360
     atttattctt accacggacg catccaattt ggccattgga gccgttttat cgcaaggtac      3420
     tataggttcg gataagccga ttgcctatgc ctctcggacc ttgaatacca gtgaaattaa      3480
     ttacagcacg atcgagaagg agttactggc gatcgtctgg gctacaaaat attttaggcc      3540
     gtatttgttc ggtagaaaat tcaaaattgt aacggaccat agacccttgc agtgggttat      3600
     gaatatcaaa gaacccaact cgcgcctcac acgttggcga cttaaactaa gtgagttcga      3660
     cttttcggta gtatacaaac agggtagata taatacaaac gcggacgcgt tatcacggat      3720
     tgaattacat aatgaagaga ctagctcgct tatcgcgaac cctaccgaaa agcctccttc      3780
     gttagataac tcacggactg ctactgtaca cactgatgca gagaacccga tactagaaat      3840
     acctatatcg gattttcccc tcaataaata tcataagcaa attgttttta cagttgtcga      3900
     tgacgtaaag agccgccctt ccgtttcgaa gccgtttgaa tcgcatgtta ggacacatat      3960
     tcagatttct aaaaataacc ttgaagaaga tatagtaaat gccgttaagg aatatgttag      4020
     ccccaaggtg aagaccggta tactcattaa acccgcatta gctatgtacg aaattattcc      4080
     cgttattcaa aatcaattca aaagttcatc catggattta gtattgacaa aggttgagtt      4140
     agataacgta aaagattacc ttaaacagca ggagataatt cgcaattacc atgaaggtaa      4200
     gaccaaccat cgagggatta acgagtgtta catgtcttta tctagcaagt attattggcc      4260
     taaaatgaaa gagcacataa tgaaatacat aaatgagtgt aatatttgtg gtcaagccaa      4320
     gtacgataga aatccagtaa aacagaagtt tcatatcgta cctcctccaa ctaggccttt      4380
     tgagatagtc catcttgatc ttttaagtgt cgaaacgcat aagtatctta caatcattga      4440
     tgctttttca aaatatgctc aggcttatca cttgaaggac gcaacagcaa tcagtgtcat      4500
     ccaagctctt ttagtattca gtacccatca cggaattccc ttaactattg taacagatag      4560
     aggcccggaa ttcactaatc aattatttct agagtttgta cgaatacaca aaatccaaca      4620
     tcataaaatt ttggcatata cacccaatga aaatggcatg gtggaaagat tacattccac      4680
     attattagaa cacctgcgcg tgttgaaatt agagcaccgt ggggagtccg taatcaactt      4740
     gatgccatat gcgatcctag gttacaatag ctctattcat agttttacga agtgtaaacc      4800
     tttagatata ataaccggcc atttagatcc acgtgatccg ttggatatta atgtttcgga      4860
     taatattcta cagttatatt cacaagaaca ccgtaataaa atgcaaaaag tctacgaaat      4920
     tatcaatgag tcatcgcttc acgaccgtac acgtattacc gagaacatta ataaagatag      4980
     ggagcccgag caggagtata gcccaaatca gcaaattttt gtacggaacc ctatggctaa      5040
     ccggcaaaaa ttagccccta gatttacgcg cgatactgtt ttagctgact taccgatcca      5100
     catttatacc aaaaagaaac gtggacctgt tgctaagtcc cgtctgaaaa gagtccctaa      5160
     cagttcccga ttgttacagg ataattccgt tgatcctgag cctggcccaa gcggaagaga      5220
     taatattaaa tagtttggat aatggacctg gcatattgcc tttcatgcta ggaaaggcca      5280
     agattatttc ccactatcat tcgttcatac aaccagttaa gttagatgta atgcgtaaga      5340
     atatagatgt agttaagaaa caattagatt atattacacc cgaattccac aataagacgc      5400
     tatcattata tgaaccacac ttagaacatc ttaatagtaa aatctcatta ttatccgacc      5460
     aactagaatt atttcagtct aatcgcgtta aaagaggcct tatagacgga ttaggttctg      5520
     ttattaagag catctccgga aacttagatt acagtgacgc catccgttat gataacgcta      5580
     tcaaaacctt acaggaagat gacaataaaa tcgttacaga actgaataat cgcgtgagtt      5640
     taaacaaaca ctggatgtct gaaaattcgg atattctgca cagattaata gagaaccaaa      5700
     acaaaattaa ggacaccgta gatagcattt caactagtaa tttacgtagc gaacaagaca      5760
     tagttaaata tgcccatctg gctcagttct tattaatgct aggcgataac attgaaacat      5820
     tatccgacga actacttaga ttagaaaatt tactagcttt tatacgtgcg aagagcacgc      5880
     atttccttat gtttaagtta gatatgttta atagaatgat agaacagttg attgctctct      5940
     atggaagaga acaagtactg gatattaggt ttagagaata ttttgatatt attaagttag      6000
     gttattacta tagcagccag aacttaatac tggtttttaa actcccggtt gtctttccct      6060
     ctacctacga tctttataaa ttatccataa tacccaacaa agataataaa gtattaatcc      6120
     cgtcctatcc cctcctggca attcatgaca aagattttat gtacatagag gcagaatgcc      6180
     cgaagtccag ccaatactat ctctgcgagg ataacataaa ccaccgctac aggaaccaag      6240
     gcaactgcat ccaccatctg ataactacgc agcaagttga cgaatcctgc catttcacca      6300
     ctgcccaact taagacggaa gctgtggaag cactcgacga tcgtcactat gtagtgagct      6360
     ttcctgcacc tacaaagatt cgtttatctt gttctgaaac tcaatataac atcgtacaag      6420
     gaagctatct aatcaccatt ccaaagggat gcgttgcaca aaccccagcg ttcactttgg      6480
     caaataagaa cgaccgcatc aaaggacaag tactcaaaat tatgaacatt ccatttcaag      6540
     acgaagccat ctacaacctg gaggccagaa aattaactct caactctgca gatctccgca      6600
     gcctccatgt cgctacccaa gaaatttcta tggaaacacc gctgaaaata aatcaaaccg      6660
     atattcatag cgtgtattac actatcacgc cgttatacct tgtactatta ggtgcaagtg      6720
     cactgggcat cggctacgcg atacgaagat acctaaacca gcgttcactg aaaacgacta      6780
     ctgaacatca aactaatgag attgaaagcg gcgaagtcta tgctgagatt aaccaacata      6840
     cgcctgcacc tcagccgaga ttatcagcgc tattatcgaa cctgtcaaac aatagtcgct      6900
     gatcttcggg agggaga                                                     6917
//
ID   Gypsy-38_SpEx-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4167-4167 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 291 BP; 91 A; 65 C; 46 G; 89 T; 0 other;
     tgttaagtac caatactcta cagaacccgc aaattaagga aatttatgca atacctaatc        60
     aacattgcat cagccaggca acaagaacga aaacgctgat gctgcgcaac gtgacacacg       120
     tgtaggccac cggacggcgg catcaatttc cacatatttc ctcacttttg tttccaactt       180
     cgaacaattg tcatctacca tatattttaa tgtaatattg taataagttt aataaatagt       240
     tgcaattaat ttcggttttt tttgcaactt gcccgccggt ctgacttaat t                291
//
ID   Gypsy-38_TrNi-I repbase;    DNA;    INV; 5869 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5869
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 241-241 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 5869 BP; 1995 A; 1026 C; 1154 G; 1693 T; 1 other;
     tggcgaccct gccagcgcag taagtgcgag acgcgatgtt tacatatctt tgcccaaatc        60
     gggacactta gcttcacaat gcagtgcatc aaatgcaatc attgttcgag acttgcaatt       120
     atcacgacgt tcttacctta tcttttgaat attctgaaaa atgggcacca ctaacaccaa       180
     ggaagaagta atagtacccc agaacgcagc aggaggtaat aacagcgcgg acattcgtca       240
     gctggctgtg cacgccagtt cgaccaacat catcttgttg gtgttattag taataacatc       300
     attggcgttt ttgtatggta tcttcaccct atatagaaga tgtcaccggc aatggatggc       360
     tgacgagata aggcgagaca gattacgatt gtcgctatgg agaagaagag cagatagaga       420
     aagggatccg agagaccagc cggaggcgag aagttacagg aaagggactg aggacatcat       480
     ttgagttacg aggcggagaa aatatcagtg cagaaaaata ccagtgcgtg gaaatttcgt       540
     gtgttgtgta gtgcgcggaa atgtcgtgtg ttgtgtagtg cacggtaaat atgtatccta       600
     cgttattata aaggacatag ttaagggtaa agtatataat catagatata ataatcacta       660
     aaatgtatgc atatgatagt acataatttt ataaccatgt tatgaataat ataccttaat       720
     ggaagaaaac ttaagggcct tgtatgacag tctgtttgaa ataagaaaat acttaattaa       780
     gattggtccg gagagacgaa agggtaatat tattgtagtt aaattgaagg aagcagacaa       840
     attattaagt gaatataatc tatttttaga atattatact tcggccaaag aatctttaag       900
     tacaaccgaa tgttcagtca ttcatgattt atgtgctagt tttgataagt tatataaaca       960
     agttttcgat ttatgctcaa agagaccctg tgaatcagta agcatggcag agactactaa      1020
     gtttgatctt aaagttgcgt taaatttatt gccagtttgt aaagatgatg aggctagtgt      1080
     acgacagttt attgaaagcg tagaatatta caaatccgaa ttagacgtaa gctcgcaggc      1140
     aaagttgtta aattttgttt taaaaagtag actttcccca gccgcgaaat tgaagttatc      1200
     ttcatcctac cctaatattg atgagtttat agcagacatg aaaacacaat tattgcccaa      1260
     aaagtgtgct actgcaattc aacgtaggct tcaaaatttt aaacaaaata atttatccat      1320
     cgacgagttc ggtaaacaga taacggaaat gtttgtcgaa ttaacaattt cgcaatcgga      1380
     tggcaacgat gcaagttttg aagtcctaaa acccctaaat gaaaagcagg ctattaagta      1440
     ttttgcagaa gggttaagaa atcgccgtct aagcaccata atttctgccc aaaaatttac      1500
     gtcactaaag gacgccatac aatcagcggt agacgaagac gtcacaactc catcgacttc      1560
     caatgacatt ttaaccctaa attatagagg cagatcattc caaaataggc cacagcgtgg      1620
     aggccgcccc tcgtttgcag ggagaggacg cgggcgagtc ggctatcaac cggctactcg      1680
     atacggtgat cagactcagg tacggagagg accacaggcg aatgggcgca gggctactgg      1740
     gacattccac ggaaacagag gtaggtccaa tttttattca ccaaggtacc agcgttcgca      1800
     ttattcgcaa atacatactt tgagtaactc agacccgcag cagggttcga ataccacgga      1860
     gaatgaacaa gaagaaaacc agttttttcg ggactgataa cattatttta tcatgtaaca      1920
     gtgtaggtta cgtaaatctt aaatctcgta ataattattc ttwtaacttg ttagttgaca      1980
     ccggcgcatc catttcagcc ataaaacata aacacgtgca agagcaaaac attccaatcc      2040
     atatcgagac aagttttata aatggaattg gaggcaaagt ccaggcaata ggatacgttt      2100
     atctgaactt tgttattgga aatcatactc tcaaccataa attctttgtt tttaaatcat      2160
     tgccatgtaa aggcagtggt attctagggc aggacttttt aagtaagtat aaatcggtat      2220
     tgaattttgg taatcggact ttgttactgt ggaataacaa tttaaagata tctttacctt      2280
     tgatgatgac gaataataac ataactatac cggcgagatc agagtcgatt cactttattc      2340
     cggtatctga gactgatgaa tgtttagtca atgcaacaga actgcaagaa gggatcttta      2400
     ttgcgagtag tctagtaaag cccacaaatg gattaatacc cattcgcgtt ttaaatacaa      2460
     ccgagtctga cttagtttta aattctatac accccactct ttataaagcg agtgaatatg      2520
     acatatgttc gtttcatgaa accactaata acgctgatcg tgttaagaaa gtattttctt      2580
     tattatcgct taaacattta aataaggaag aacagttatc aatcgaatcc atttgcgcga      2640
     aatattcgga tatatttttt cttccgggtg ataagttagg tacaacaaat ttatatgaac      2700
     actcaataac tttgaaaccg aatgtagccc ccgtatatgt caagccctac agattaccgc      2760
     atgctcagaa agctgaatta aagaaacagg tggataattt actggaacaa ggaattattg      2820
     agccttgttc tagtgaatgg tctagcccag ttgtcttagt gccaaaaaaa tctgactcta      2880
     acggagaaaa gaaatggcgg ttagtcatag actaccgtaa acttaataat tgcatacagg      2940
     acgataaatt ccctctgccc aacatttctg acatattaga ttctctgtct ggatgcattt      3000
     actacacgca tttagatttg aaccaaggtt tttttaatgt aggacttgag aaaagctgta      3060
     gaaaatatac atcattttgt gcagacggtc aataccagat gactaggatg cctatggggc      3120
     tcaagaccag cccgagttca ttttcgcgta tgatgacgat agcaatggcc gggttatcat      3180
     atgacaagtg cctagtgtac cttgacgatt taatctgtat ggggcgcagc ctttcagatc      3240
     acaataaaaa tttaatacaa atatttgaaa aattacgcag cgccaatcta aagttaaatc      3300
     cttcaaaatg cgatttcctt aagaaggaaa ttctatattt gggccatgtg gtgtcaggca      3360
     atggtatatt gcccgaccca gacaaaatta aggtaataga aaattaccca gttcccaaaa      3420
     gtacggatga cgttaaacgt tttgttgcct tcgcgaacta ttacagaaag ttcatagcag      3480
     attttgcaaa caaaacatac tatttaaatt gtttatgtag gaaaaattca aaatttgttt      3540
     gggacgaaaa ttgccaaaaa tcatttgaaa gtattaacaa agtattatgt cacctccaat      3600
     tctacagtac ccagattttt cggaacaaaa taaattcatt gtgcaaactg atgcttctgg      3660
     gtatgcaatc ggtgctgttt tatgtaattc agatggccgg cctgtagcat atgctagtag      3720
     aagtctcaat aaagcggaaa tgaactatcc cactatagaa aaagagctcc tagctgtggt      3780
     ttgggccgta aaatatttca gaccttacct atacggtcgc acatttataa ttcgtactga      3840
     tcacaaaccc ctagtttact tatttaattt aaaagatccc tctagcagac tgttcaagtt      3900
     tagacttatt ttagaagagt atgattacgt aatcgaatat gtgaaaggga aggagaatgc      3960
     agctgcagat gcattgtcca gaataaaagt gacttcaaag gaactgaaag aaatgaatga      4020
     atgcttgcat gccatggtca tgacgcgcgc tcaaaagaga cagttagacg ctgctccttc      4080
     ggatgatatg ttgcccacca acgattggcc tgatcaacca agagttgtgg aaacccatat      4140
     caagccgaaa gacgcagtag agctaagatt tactgacatt agtaatttac ataaacttag      4200
     aagtgataat ttaataacat atgaaagtaa tttattattc tatgttgcgc aacagaagac      4260
     aatatttata aagccagcat ctcaatcaca aattacgcga gccgaatttg cgagagagct      4320
     gagcgatttt tgtgaaaaag ttaatattgt tgaagtatat ttcattaaaa atcaaaataa      4380
     ctacgtattt gtagaaaaac taacaagtga aataaaaaag tataataact ggaaagggcc      4440
     cagattatgt attttacaag acgtcgaaag aatagaaagc aaggatgata ggaaggtgat      4500
     tctaaatgac tttcatcttt tgcccacgag tggccacgcg ggcatgagaa gaatgttgac      4560
     taacattaaa aaatattatt tttggcctgg cttagaaact gatgtccaaa attttgttaa      4620
     aaaatgtccc caatgtcaaa agcataagta tacgtttcag gtgaaagagc ccatgacaat      4680
     tacgtcgaca gctcattcgg cctttgataa aatcttttta gatttagtag gaccactaga      4740
     taaagacagc tttgactata cttacatcct tacattacag tgtgagctat caaagtatgt      4800
     atgtgcctat cccctaatga ctaaaacatc agctgaagta gctcgtacct ttgtgaataa      4860
     ctttatatta cagcatggtg taccaaggga gatagctacc gacagaggtg cagaatttat      4920
     gtctgaaacc atcgaacagg tttgcaaatt acttaatatt aaaaaattaa attcaactgc      4980
     gtatcatcat caaagcatcg gagcgctaga aaatactcac aaaagcctcg gcgccttttt      5040
     gcgaatccaa accgaagaaa aacccgagtt gtggagtact tggttaccgt tctggtgttt      5100
     tgcttataat acgacagttc acacctcaac aaaattcaca cccttcgaac ttgtttatgg      5160
     taaaaggtgt aatttgccaa ataatttgtt aaaacgcgta gaacctcttt ataattacga      5220
     tagctaccca ctggaactta aataccggct tcaggtttcc caaaccgaag cgcgaaaaaa      5280
     tttagttact agtaaagtag acagaaaaag tagatatgac cggtatgtta accctgtacg      5340
     ctataagcct aatgacaaaa tcttaattaa aaacgaaact ggcaataaac ttaaacaact      5400
     gtactctgga ccatatactg taattagaga tttgtcacca aatgtagaag tcgaaataaa      5460
     aggtaaaaca gacatcatac acaaaaacag aaccaaattg ttttatgttt agaactacat      5520
     actgtttagt atcctttgta tctattttta gcctgtattg agaaatgtgt tgtgacgcat      5580
     acaatatcaa attgcttggg tcagtccgta gactcagtgg taaacggaga cggaccgcag      5640
     tcgcgagact gtaggttcaa gtttgaatta tgttatgtac tgcaatgaat gtgttaatcg      5700
     tatgtctaat tacttatata tctacttgtg tttacattct aatgttatgt atgagaggag      5760
     tacacatcat tttaatacgt atataatttg tactcaataa attaaggtca tgtattttag      5820
     taataaaata aaatgtaatt tttattttat ttttgtaata tgggtgaga                  5869
//
ID   Gypsy-38_TrNi-LTR repbase;    DNA;    INV; 111 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-111
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 195-195 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 111 BP; 37 A; 26 C; 17 G; 31 T; 0 other;
     tgtgagggag agtatataaa accatgtaat catctaataa aggccagtat ttactcatca        60
     attgtcgtgt catttactcc cgaaccttta cacaaacacg ccatccgtac a                111
//
ID   Gypsy-38_TrVa-I repbase;    DNA;    INV; 6305 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6305
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 283-283 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..4904
FT                 /product="Gypsy-38_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KLCIIPDPDRNARTQELEDKLSNLTELVTQLVTSQAQ
FT                 TQAQVQSSSKFSISPLSPSSETIEDFFERFEVQLGLCSIPENKWALIARFH
FT                 LGSELLSTLRNLCFPAEISSLSFKDIKEKLVAHYTKPRNKVSEAISFRKII
FT                 QKSDESISSYVSRLKQAARYCEFGEFLNYSLTIQFVHGLKNDDSREDIVSQ
FT                 KPDSFEKAVSIALNIESSVEASSILKHESKVPNSVNKFAHESRPKEKRHRS
FT                 ERRSNNNKSQRRSTNGNSNFRNSRGKNFSYSSQDKSPNRSKRFQSDRSNSL
FT                 NRSCQSCGGSHLRKTCKFNNAICDYCNIRGHIASVCRKKSDKNPNSKINEF
FT                 SAETETDFLQIKTFNGKTPPILINVLINNKLVSMELDTGGICSIISLNTLS
FT                 QLFPDVQVHPSSQIFTSYTKTKFDCVGYINVSVTFKHRTKLLQLYVIDFPG
FT                 DNIFGRDWISHFSDLLSFEDLFKNRKSVTISEASINKINVHERLDKLLTKH
FT                 ENIFGTEAGDLKGPVLDFYFKENTKPKFCRARPLPYDILDKYAANIDDKLK
FT                 SGFYSKVNHSEWASPTHVVIKNGKLRITGDYKSTLNPQLIIDDYPIPRPEE
FT                 LFSKIRGAKIFCKLDITDAFMHMKCSPRACEAMTLNTPTHGLIQPSRAQYG
FT                 VCNIPAAWQRRLEEILQDVQGSLNFFDDILVFSKTIDDLFLILEKLFFKLQ
FT                 EEGIKLNRRKCCFFLESIEFVGHRIDGNGIXKLDKHTRAIANANKPANPDE
FT                 LRTFLGKVTYYHSFIQNLSSLTFPLRNMLKASKFEWTAEASAAFETLKNEL
FT                 ISDRVLTPYDPKLPVILAVDASPYALGAVLSHTMPNGQERPIAYASKSLDE
FT                 TQKRYPQIDKEALAIIWGVKRFFQYVYGRHFTILTDNEPLSHIFAPNSLLP
FT                 KFTLSRCSNYANYLSHFTYDLKFRPSKSNANADYLSRISCVASDSDDDISD
FT                 DFNSFVIEQIGQLPLSPEIIASVTQQDSELAPIYNALQNGVDLKTLNLKGN
FT                 ELDYSTAYGCVMLGHRVVVPQQFRKKLLNELHLAHLGITKMKAIARSLIYW
FT                 PKIDQDIENIAKTCTSCLENSRMPPKDRTHVWEYPTGPWVRIHADYAGPVC
FT                 GKYLLVIVDAYSKWTKIYTTNSTTSDVTSQLLLDSFCEFGIPETLVTDNGP
FT                 QFISDEFRIFLVNQGVRFHKRIAPYHPSTNGQAERYVQTIKRAIEKMGATP
FT                 KTLRSCINQYLLHYHRAPHQTTGEPPSKLFLGRTVKTKLDNLSPVQLPISK
FT                 QQVEQVPNQNLTDRLPLSQTQTRTRSFKVGENVLFRVYNSKKKWLQGTISA
FT                 KLGKLHYYVTTQDAQHKRHVDQLIPCISSTTDSSPRTPRRVHFRDLTPDPP
FT                 IAQNAETSVVKQPPTLLAQSNPQVTQRSPVSLGLPTSSHFLGTQPSTSQPS
FT                 PAMQAPITQRSAITRPNKVPTTPLVFPSQSGSSDTESPSIFFTPSANTPNM
FT                 SYSSALVQPLAATPRTSKPSSSQVPSNPPLIVLDDNSPPSASDPKFNPACG
FT                 GRYVRRLPISRGICVRKSARTSKAPDKYSPS"
XX
SQ   Sequence 6305 BP; 1853 A; 1535 C; 1066 G; 1849 T; 2 other;
     atggcgacga gttcgtttcc ttcacgcgtg cggtaaagta tttagttccg tttcgaattt        60
     tcttcaatcc gtgaaaatgt aatttcgtga acctcgtggc ctatcagctg ttcgccggct       120
     atcactcacc atgccgtaat gtaacctatc ttcgcaaggt agatttttgc tatcttcgat       180
     aatttttgcc cgtttgctat tctcggtcat tttggtctcc taaattcgcg attcgagcct       240
     catctgcatt tctactcttt tagaaactct gcataatacc cgatcccgat cgtaacgcgc       300
     gaactcagga gctcgaagat aagctctcca acctcacgga attagtgact caattggtaa       360
     cttctcaagc tcaaactcaa gctcaagtcc aatcgtcctc aaaattctca atttcacctc       420
     tctctccatc ctctgaaacg attgaagatt tcttcgaaag gttcgaagtg caacttggtc       480
     tctgcagcat tcctgaaaac aagtgggccc tcattgctcg ttttcatctt ggctcggaac       540
     ttctctccac tcttcgcaat ctctgctttc ctgccgaaat cagttctctt tcgtttaagg       600
     atataaagga aaagttagtt gctcactaca caaaacctag gaacaaagtc agcgaagcta       660
     tctcgtttcg gaaaattatt cagaagtctg atgaatccat ctcaagttac gtgtctcgtc       720
     tcaagcaagc cgccaggtat tgtgaatttg gagaattcct caattactct ctcactattc       780
     agtttgtcca tggcctgaag aatgatgaca gccgtgaaga tattgtcagt cagaaacccg       840
     attctttcga aaaagccgtc tcaattgctc tcaacattga atcttccgta gaagcctcct       900
     ccattctaaa gcatgaatcc aaggtaccaa attctgtcaa caaatttgcc catgaaagca       960
     gaccaaaaga aaaacgccat cgatctgaac gccgatcaaa taataacaag tctcaacgtc      1020
     gttcaaccaa cggtaactcc aatttcagga actcaagagg taaaaatttc tcttattctt      1080
     ctcaagataa gtcccccaat cgctctaaac gttttcagtc tgatcgctca aattctttga      1140
     accgctcttg tcagtcttgt ggtggctctc atctccgcaa aacttgcaaa ttcaataatg      1200
     caatttgtga ctattgtaat ataagaggcc acatcgctag tgtctgtcgc aagaaaagtg      1260
     ataaaaatcc aaactccaaa ataaatgaat tcagtgctga gacggaaacc gatttccttc      1320
     agataaaaac attcaacggt aaaactcctc cgatactcat aaatgtatta attaataata      1380
     aactggtctc catggaatta gatacagggg gtatctgctc cattatcagt ctcaatactc      1440
     tctctcagct atttcctgat gttcaagttc acccgagtag ccaaattttc acatcgtaca      1500
     cwaaaacaaa atttgactgc gttggatata tcaatgtctc cgtcaccttc aaacatcgaa      1560
     caaagttgct tcaattgtat gttattgatt tccctggtga taatatcttt ggccgggact      1620
     ggatctcaca cttctctgat ctcttatcat ttgaagacct ctttaaaaat agaaaatcag      1680
     taactatcag cgaggcaagt atcaataaaa tcaatgtcca tgaacgtctc gacaaacttt      1740
     taactaaaca tgaaaacatt tttggtaccg aagctggtga tcttaaagga ccagttcttg      1800
     acttttactt taaagagaac accaaaccta aattttgtcg tgcccgacct cttccatatg      1860
     atatacttga taaatatgct gcaaatattg acgataaact taagtcaggt ttttatagca      1920
     aggtaaatca ttcggaatgg gctagcccaa ctcatgttgt cattaaaaat ggcaaactca      1980
     gaataacggg tgattataaa tccaccctta atcctcaact aataatcgat gattatccta      2040
     ttcccagacc agaagagttg ttttcaaaaa tcagaggcgc caaaatcttc tgcaaactcg      2100
     acatcacaga cgctttcatg cacatgaagt gctctccacg tgcctgcgaa gcaatgacgt      2160
     taaatacacc cacccatggt ttaatccagc catctcgcgc gcagtacgga gtctgcaaca      2220
     tccctgctgc atggcaaaga cgcctagagg aaattcttca agatgtgcaa ggttcgctca      2280
     atttttttga cgatattctc gttttctcta agactattga tgatttgttt ctaattcttg      2340
     aaaaactctt tttcaaactt caagaagaag gaattaaact caacagacgc aagtgctgtt      2400
     tctttctcga aagcatcgaa tttgtaggtc atcggattga tggaaatggc attcakaaac      2460
     tcgacaagca cacccgtgca atcgctaatg ccaacaagcc tgcaaatcct gatgaattgc      2520
     gtacctttct aggcaaagtt acatactacc attcgttcat tcaaaattta tcttccctca      2580
     ctttccctct tcggaatatg ctcaaagcga gtaagtttga atggaccgct gaagcttccg      2640
     cagcatttga gaccttaaaa aatgagctca tctctgatcg tgtgctcact ccttatgatc      2700
     ccaaattacc tgtcatcctt gcagtggatg ctagtccata tgctttagga gcagttctgt      2760
     ctcatacaat gccgaacggc caggaaaggc caattgctta tgcgagtaaa agtctggacg      2820
     aaactcaaaa gcgctacccg caaatcgaca aagaagccct cgccataatt tggggagtga      2880
     aacgcttctt ccaatacgtt tacggtagac attttacaat tcttaccgac aacgagccac      2940
     tatcccacat ctttgctcct aactcattat taccaaagtt cactctatct cgttgctcca      3000
     actatgcaaa ttacctttcg cactttacat acgacttaaa gtttagaccc tcaaaatcca      3060
     atgctaatgc cgattacctg tctagaatct catgcgtagc ctcggactca gatgatgaca      3120
     tctctgatga tttcaactct ttcgtcatcg aacaaatcgg tcaactgcct ctctctcctg      3180
     aaattattgc ctccgtaacg cagcaagact cagaactggc acccatctac aatgctcttc      3240
     aaaacggcgt agatctcaaa actctcaatt taaaaggtaa tgaactggat tattccaccg      3300
     cctatggttg tgtcatgtta ggccatcgag tagtcgttcc gcaacaattc cgcaaaaaat      3360
     tgctcaacga attgcacctt gcccacctgg gcatcactaa aatgaaagca attgcgcgct      3420
     ccttaattta ctggcctaaa atcgaccaag atattgaaaa cattgcgaaa acctgcactt      3480
     cttgtcttga aaactctaga atgcctccga aagacagaac tcatgtttgg gaatatccca      3540
     ccgggccctg ggttagaatt catgcagatt acgcaggacc cgtctgtggg aaataccttc      3600
     tcgtaattgt cgacgcttat tctaaatgga ctaagatcta taccaccaat tccacaacta      3660
     gtgacgtgac ttcacagcta cttcttgact cgttttgtga atttggaatc ccagaaactc      3720
     tggtcacaga taatggtccg caatttatct ctgacgaatt ccgaatcttc ctcgtaaacc      3780
     aaggagttcg tttccacaaa cgtatcgccc cttaccaccc ttctacaaac ggccaggccg      3840
     agaggtatgt gcaaacaata aaacgagcaa tcgaaaaaat gggtgcaacg cccaaaactc      3900
     ttcgctcgtg tataaaccag tatctgttgc actaccatcg tgcgccccac caaacgacag      3960
     gcgaacctcc ctcaaaactc ttcttaggaa gaactgtgaa aactaagctt gacaatctct      4020
     cacccgtgca attgccaatc tctaaacaac aggtagagca agtaccaaat caaaacctca      4080
     ctgaccgatt gcctctttct caaactcaaa ctcgaactcg ctccttcaaa gtcggagaaa      4140
     atgttttgtt tcgagtttat aattcaaaga aaaaatggct gcaaggaacg atttctgcca      4200
     aactaggaaa acttcactac tatgtcacaa cgcaagatgc tcagcacaag cgtcacgtgg      4260
     atcaactcat accctgtatc agttcaacaa ctgattcttc tcctcgaact cctcgacgtg      4320
     ttcactttcg agatctcact cctgatccac caatcgctca aaatgcagaa acgtcagttg      4380
     tcaaacaacc gccaactctt ttggctcaaa gtaatcctca agtcactcag cgctctccag      4440
     tctctctagg attgcccacg tctagtcact ttcttggtac tcagccatcc acaagtcagc      4500
     cctctcctgc tatgcaagca cctatcactc aacgctctgc tatcactcga ccaaacaaag      4560
     ttcctacgac tccattggtt tttccttctc agagtggctc ctctgacaca gaatctccaa      4620
     gcatattttt cactccgagt gccaatactc caaatatgtc atactcctca gctttagttc      4680
     agcctcttgc agccactcct cggacttcaa agccttcgtc gtctcaagtg ccttccaatc      4740
     cgccactgat agtgttagat gacaactcac caccttcagc aagtgaccct aagttcaatc      4800
     cagcctgtgg aggaaggtat gtccgaaggt tacctattag ccgcgggatt tgtgttcgca      4860
     aatctgcccg tacatcaaag gctcctgata aatattcccc ttcttagcct ttactttaaa      4920
     ttttgaactc aaacttaatt actttaaatt ctgatctcaa atttaacctc ttaattagat      4980
     aattaataaa tctaataatt gtcctaatta tcaactttaa atttgtcgct aaatcaagcg      5040
     cttagcttat tttctttaat ttctctgctc tctcgagcaa ccgacgaatg acttagttta      5100
     ctagtcctat tctttaagtg acatttactt tcttaaaatt aaatacttat tattttcatt      5160
     tccttttatt tgttgctagt catttgtttg taaatatgta aagaggttga tccagctccc      5220
     ataaggaatg ggctatcgcc aaaaaaattt catattttca gagccgatag aactcgtcaa      5280
     gacgcgttca acgatggcca gtttttttaa ttttggtcaa ctggtaaggg gggagggggg      5340
     tccaaagtca aaaccttcaa attcccataa ctttctccca aatcaataat ttgacttgaa      5400
     ctttgcgtca aaagatttgt cttaaaaaga gctttcgatt gatgtgtatg aaaattaaat      5460
     tatacaaatt ttaaaccaat tttttttcaa tttttacaat tttttcaact tgaaattttt      5520
     ggttttttga gcctgaaaaa tacgcgcaac gggttgagga gaataaaaaa ctatggaaat      5580
     aaatgtcaaa gctatgctct tttgaatggc acaaaccgca atccggggaa atgctccgtt      5640
     caaaagttat aagcgcctaa agttgtgcac ctccgaaatc acggtgcgtt cagtgcatgt      5700
     tttcaatggc gcgcgtcacc ctcgctcacc cgagatcggt acgcgccctt gaaaacatgc      5760
     actgaacgca ccgtgatttc ggaggagcgc aactttaggc gcttataact tttgaacgga      5820
     gcatttcccc ggatcgcggt ttgcgccatt cacaagagca tagctttgac ttttattccc      5880
     atagtttttt attctcctca acccgttgcg cgtatttttc aggctcaaaa aaccaaaaat      5940
     ttcaagttga aaaaattgta aaaattgaaa aaaattggtt taaaatttgt ataatttaat      6000
     tttcatacac atcaatcgaa agctcttttt aagacaaatc ttttgacgca aagttcaagt      6060
     caaactattg atttgggcga aagttatggg actttgaagg ttttgacttt ggacccccct      6120
     ccccccctta ccagttgacc aaaattagaa aactggccat cgttgaacgc gtcttgacga      6180
     gttctattga ctctgaaaat atgaaatttt tttgccgata gcccattcct tatgggagct      6240
     ggatcaacct cttttaacta tcatcaattt tctagtctcc caagtctgaa tttgcccagg      6300
     gagaa                                                                  6305
//
ID   Gypsy-38_TrVa-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-38_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-227
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 342-342 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 227 BP; 52 A; 51 C; 33 G; 91 T; 0 other;
     tgttatgacg ctcaattatt gtttaagttg gtaaacactg tattctgtgt tggcccctat        60
     caggtggtaa ccctgccggg gcatcatttg ttacatcatc aatcgttcga ctgatatact       120
     tcgctatccg ctgttcttga atatacttac gtctcttatt actcgaatct tattatttca       180
     accatcttta ttccttttcg ttatccttat taatcccagt tataaca                     227
//
ID   Gypsy-390_AA-I repbase;    DNA;    INV; 6142 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-390_;
KW   Gypsy-390_AA-I; Gypsy-390_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6142
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6142
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6142 BP; 1916 A; 1506 C; 1325 G; 1395 T; 0 other;
     ttagcgccca acgaaaaaat ccactacttt cagttatagt ggcagtcaat ttcagtcaat        60
     tgagggtaaa gtgagtcgtg ttgtgtgtca ttattatgga tatcctacat ctatcggaca       120
     acgaactgga tttcgagatt caactaagaa agcacgaccc aaggagctgt aaaacaaggc       180
     aggaaaaaac cgggaagctg cgtacattaa tcgagacaga aaaaatatca atggaaatcc       240
     ccgagacagc ggaccacgtc atcaatcaag cggagcacgt tgacatctgc caaagaaatc       300
     tgcgaaacat caacgaacgc ttgataaaag cccttgaaca ggaaagttcg actgaactgg       360
     caacatgtag aagtaaactc ttacactaca ggggtagagt agcaatgatc actgacaagg       420
     actttgcggt atatgtgcgg aaaatggaag gctatacgga agaggcgctt caaagaatcg       480
     ctgatttttt cagtagcgta acactactga gtccatcgat ccacaaagct ccaggagatg       540
     ttccaatatt accagaaatc gatgacttgg cgacaagatt gcaaaactcg aagttacaat       600
     ctagcttcaa ggatctacac cataatacac atcactcatt cgaggtaaac gctccaggcc       660
     ttgaaaatct tcagttgcca agattaccac gtgaaagctc cagacaagat caacagtttg       720
     tcggcgaaca aacaccaaaa tttccaagga tggatcccac accaacaatt caaaaccgaa       780
     tcggcgccta tggtcagcag gcgggaaatg atgatccact ggacgtacgg gatgaggtca       840
     tacgctacct tcttcaaagc cgaggagatg caatgcgcag ccatgcgcca caacgattcc       900
     gatctacgca acccattcac aagtggcctt tctcctacgc gggagaggca aacatcatgc       960
     agttggccgt tttcttgaat cgagtcaaga cctacgcgga cacggaagag gttgatgagt      1020
     tagcgctact gcgtggagtg aaacatctac taaagggacg tgcgttggaa tggtacatcc      1080
     gctcctatca caactggccc acctgggagc acttcaagaa agacattaaa aaggaatttc      1140
     ttccccaagc gtactcccaa cacatgaagc gagacttata ctggcgcctt cagggctcgg      1200
     acgaaccttt tcttgcttac taccgagata ttctagcgtt gttcgaagta gttgaaccag      1260
     cactatcaga ccacgaccgg ttgtacataa tgaagtccaa cctcaatccg gagttcgcag      1320
     cgattgcatc ggcttcacga gcggggacgg tagaagagct gattggcgtt tgcaaggact      1380
     atgatgaagc tcgcacatac tctcaacgta gccgttcaac acaaggccaa aaaccgccca      1440
     attcttcgca aggagcaagc gttccatcaa gaacgatacg acccgcatca aacccatatc      1500
     cgtggaatcg accaccactc gctcgtccac aacaagttaa catgttggaa gaagaagaga      1560
     ttgaaagccc ggaacattcg gaacaacctg cttccatcat agcatctgga gaattggaca      1620
     acaacaacac agcatgttta gcagacctga tacctgaagt caacgccgta agaagcaaca      1680
     tatggcaacc gaggcccacc acccaaacga ctagagcatc gcagtctaca aatatcacgt      1740
     gttggcagtg cgagcaacag ggccatacat ttcttaactg tttgaatccc aaaacataca      1800
     tcttctgcta tcgatgcggt agaaaaggca taacttcacg caactgtcaa gactgcataa      1860
     ccagactagc ccaagcgatc ccagaaggct caccaaatcc gggaaatgcg cgtccggggt      1920
     ttcctcaatg aagggtgtcg attctccggt agttcaaaaa atcccaaccc ttcaacaaac      1980
     gaaatatttc cgcaacgtag cgtctatcgt cttcgacaca tcggcaggag ataatagacc      2040
     gtacgcagac gtgaggatca tggaaaaacc aattcgtggt ttactggata gtggagccac      2100
     ttgtagccta atgggtggct cacttacctc catggtagat gagttgggcc ttacgagatt      2160
     cccagtgcag ggagccatca aaacagcgga taatacatca cacaatgtgt ccttctatgc      2220
     atttatcccc atagaataca acagaaaaaa gttaattcta ccaattttgt gcgttgaatc      2280
     tcttccgcca acactgatcc ttggaatgaa cttctggatc aagtttggcg ttcaaatttc      2340
     cctctgtgga atcaacgtat ccagtgattc caatatgaca acaatatcat ccttcagtca      2400
     agaggagcaa gagcgactta aggagacgat tgatttattc cccacgtcag aaaatcaagg      2460
     gcgcctagga cgaaccaata tatacagaca taaaatcgac acaggaaccg cccagccctt      2520
     caagcaaaaa tattacccca tctctaagtt tctgctggag gaccttaaca aagaggtaga      2580
     cagaatgctc tcacttggcg ttatcgaaga ggcagtgtgc tgtccatgga ataacccagt      2640
     agtagcggta aaaaagaagg acggttcgat gcggctctgt ctagatgcga gacgcctcaa      2700
     cacaataata gtccaagagg catatcccat cccacaaatt gcttcaataa tgagcaacct      2760
     aagcggcagt cggtacctct cctccataga tcttgaagcc gccttctggc agattccact      2820
     cgacaacgac tccaagcaaa aaacggcctt cacaataccg caacgcgggc attttcaatt      2880
     ttgtgttgtt cctttcgggt tatctaccgc aagccaagcc ctctccagag tgatgaatca      2940
     catattcatc gacatggaac ctcgagtttt cgtgtatttg gacgacctga ttattgcaac      3000
     gaattcattc gaagaacatc tgcaggtcct aaaggaagtt gcacgcaggc ttcgctgtgc      3060
     aggactaaca atcaatgcaa cgaagtccat cttctgcaga agaagtttga agtacctcgg      3120
     ttacgttttg gacgagaatg gttggaacac tgacaaggag aagactgaag ccatcaatga      3180
     cttccccact cccaaatcaa agaaagagat tcagcgattc cttggaatgt gtggatggta      3240
     ccgccgcttc atcaaggact tctctcgcat tgcagcgcct ttaacggaat taacaaaagc      3300
     cagaataaag tttgtctgga atgagtcctg tgaattagcc tttaacactc tcaaacagcg      3360
     cctctgcagt gcaccggtcc tgtgcacgcc agactacacc aagccctttt caatagcctg      3420
     cgatgcgagt gacattgcgg tgggggctgt tcttacccaa gaaactgacg gtcacgagaa      3480
     agtaatttgt tacatgtcac agaaactatc tcactccgag cgcaagtact ccgtcacaga      3540
     acgagaatgt ctagcggtca ttaaagccat tgaaaaattc aggggctacg tggagggtag      3600
     tcacttcacc gttttctgcg accactctag cctgacatac ttgaagacaa tgaagaatcc      3660
     aaccccgtta atggcccgct ggatattacg cctcaacgcc ttcaactttg acattaaata      3720
     tcgtaaaggt acgataaacg tcgtgccgga ttgtttaagc agaatcggaa tggtcaatgc      3780
     ggtaaccgca gacagtcaag cacagcaagt ggatacctgg tatgaagagt tgatgaagaa      3840
     cgtggaacaa gataaggatc aatacccgga cttccggatt cttaacggag gtttatacaa      3900
     gaactgcgtg acagctgacg aaatgggtat ccgaactcat cggtggaagc gcgttgttcc      3960
     ggttgcgatg cgtcacgata ttcttcgaag gtttcatgat cttccaacgg cggcgcactt      4020
     gggatatgac cgcactatca acaaaatcca gcaagactac tattggccga agatggcaaa      4080
     ggaggtgaaa caatacatcc aatcttgtgc catttgcaag gcctcaaagg ctccgacttc      4140
     acttcaaacg cccactatgg gagctacaaa gcccgccaga ctcccctggg aactcatctc      4200
     tatcgattat gttggcccca tggtgagatc gcgtaacggc aatacggtcc tgttagttat      4260
     tgtagactgg atcacaaaat tcgttatcgt tgaaccgttt agagccgcca ttgcgcagaa      4320
     aatggtatcc tttctagaat gctatgtttt cctgcgcttc tcaactccca gagttatcat      4380
     cacggattcg ggaacacaat tcacctcaca cgcatttcgt tctctcttac ttcgttacaa      4440
     cattacgcat atgcgtacag cttactacac accaatgtgc aatgctgcgg agcgtacaaa      4500
     ccgtaccctg gtaacctgtg ttagagcgtt gctcgacgag gaccagcgca actgggatga      4560
     acacctgcaa caaatcgtct gcgcaatcaa taccgctaag cacgaaacgt tgggatgtag      4620
     cccatattac gctaactttg gccgaaatca tatcttgttt acagaacaat acactctggc      4680
     tgcgatgaac acaccggccg acgagacaaa agcgaaggaa gcaagattaa aagcagtgca      4740
     caatattcag cgattcgtag tagatcggat ccgtacagca cacgaaaaaa gcaaacaacg      4800
     ctatgatcta cgagcaaggg aaaggaagtt taccattggc gaacttgtct ggcgtcgatc      4860
     tttccagaaa tcttcagcga tcgagcaacg cacaaagaag ctaggtccga aatatatccc      4920
     ttgttacgtt aaagaagtac atggagccaa taactatctg ctagaagatg tgaaaacgtc      4980
     gtcggtaggt gtataccacg ctaaagacat caaggcagat tagagtcctc cttgattagt      5040
     cagctatgtg aacagtccat actgtcaacg aagtgtgaac caaccgaaat caccaacaaa      5100
     cacacgctat gcggaagttc tatgaccaca gagagccagc tatgaacaca gcattccgaa      5160
     gctgttgaca acgagcatta cacgccataa aatacggaaa cggattgatt tgaggcccta      5220
     caacatgcat cacgaaacct cgtcatccaa tgcggcagta aaaccacaag gccacatcgt      5280
     gctgggaact cacggcagac aaaacaccga cgatagccct accgcaactg ccaaacacaa      5340
     cccatttacg cacggcaaca agttaacaag ctatgcacgc agtcgacaca ctgccaacca      5400
     agatcatcaa gtcaacaaaa cacgttcaac ggaaccggct gtaggaccaa aactgctttc      5460
     gaaacctcgc catccaacgc aacggtatag gagcataaca accaggcaaa gcacgaaaca      5520
     caataagaca cacgactcac taaggcaaga catcactcac cttcctcatg atggcttgcg      5580
     ttctagcttg cgtatttgtc tcgcgcgctt tgagtaccac gcaattgaca agttaatctg      5640
     ctacaaaatc aagctaaaag agatacaact actgttatct aaagctatca atgtcagcga      5700
     ataacatgta acaagataaa gtggaagatt gtactttctc gatgtaattc aagaggtttg      5760
     ttactaagcg ctcaagtgac cgaccattgt aatactgatc atgaagactt caattgtacc      5820
     aaacacttat aatataacta gtataaggct atagtatgta gaattctgtt cgggtagcat      5880
     cttactacgc cgatatatgc attttgcagt atctgtcact aactagtagt gagggcaaac      5940
     aactctttat ggatattaag atttattttg tgaaaatcac tacgcaactt cggggtacaa      6000
     aattgtaatc aaacctgccg aattgcatta gattagtaag caacaattgg actcatcagg      6060
     atcaagccgt ctagcagact tcacgaaatt tttgtgaagc gctgccagct tcacaaaaat      6120
     ttcgttgctc tcgacatggt gt                                               6142
//
ID   Gypsy-390_AA-LTR repbase;    DNA;    INV; 1635 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-390_;
KW   Gypsy-390_AA-I; Gypsy-390_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1635
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1635
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 143-143 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1635 BP; 498 A; 404 C; 361 G; 372 T; 0 other;
     tgtgttacgg atcacatcga caaagtactg gatttgccgc acacttaatt tccgtgcata        60
     aaaatactcc tgcatgggca aaccgaccga atacctcttg aaaacaagag agcttattca       120
     agttttcttg aaaacaacac cgccattgcc acactcacac acaaagcgaa ccacttccgt       180
     gtaagaaaac cgatcggaga aaggtgtgag ccaccgaaag gttgcacaaa aaattccgtc       240
     ctccgtgagt ccgcgtcttg taggtggtac tggaaaagct aagatcggtg aacttgaagc       300
     cgattgactc agctgaagga gaaatctggc caaaacgatc aacatcttgg ccgttaaagg       360
     tgaaatatac gatatacggt gctcccatgt gcatttgact caaagtcaga atttcaccca       420
     cagctcaaaa ttccacgagg tcaatcgacg cccaaccaga gtacccaaat caactggcta       480
     ctgcgttgtg ccgaaaacct tctcagctcg atctagaaag gtgacgtcta ttttgattat       540
     tacgcacaat acagactaac tttcgtcatc tcatgcagct tttccacccg acacgacacg       600
     aggctaaaat acccggagaa cggtttccta ttggatccaa atccaatcag ataagacccg       660
     tcaatccatc gaactgaatt gaaggtaaat aagaaattcc ccgataagta aacaaagctt       720
     acaccagttt cctctaacag cacatcatcg catcagcacg attccctaca ataatcagcc       780
     tcgcatcctc gcagcgtgaa gagacgaagc cttcaagaga agtaagttcg tcgatcttta       840
     ataataacgt ttatctaacg caaaaaaaaa aaaaaaccat tgatagggct tcattaccgg       900
     attccattcg ccggcaaagc ggcgacagat aatcttcggt gcgtttgctt tggtcgaggc       960
     agcgagcact gacaggccaa cgggccactg cccctgtgat caccattcgg gacaagccgt      1020
     ccatcggtag gctgtaatct agaaggagcc tccgctcaca gagcgacaga agatctcatc      1080
     gtgccctaca ttagacgatg acaagtgcac cggtgtgtag tgttggccag gagaaaacga      1140
     cgcgcggagt gtggctcggc cgagtgtagt agaagctcga tttaggacga gtgccacagt      1200
     caagcatcag cactgtcagg gtagagcatc ccacgaatcg ggacatcgag agtcaagcca      1260
     ttgaacgata ttggcgatct gagtgatcgc gccttcgaag cataggcgat tgcatgttcg      1320
     cacagaagcg gcgtcatcat cacggggccc cgtccagcag cagagcatcg aatgcagcaa      1380
     ggtaccgtta gtcttaagta aacataagag caaaaatgtt tatatgtagc aatatatgtc      1440
     aaatgccatg aatatttgat acgttttatg atagagcgcg ccacattgac tgcccgagca      1500
     cctcactagc catctgattt gcttagccgg gcaagaacac taaacgtaac aggtctcgtt      1560
     cactcaatgg gcaattccgt cttcattttg tcattttgag tctcattcat atgagtgtaa      1620
     aaagagtaac taata                                                       1635
//
ID   Gypsy-391_AA-I repbase;    DNA;    INV; 5055 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-391_;
KW   Gypsy-391_AA-I; Gypsy-391_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5055
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5055
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >% similar to each other.
XX
SQ   Sequence 5055 BP; 1576 A; 872 C; 1117 G; 1490 T; 0 other;
     gtgacggcga ggataaaact ttatcagtga gtgcgtgaaa agaagtagct gggatctgca        60
     ttataggagc aagaggttgc tagccggagc gtcatcaacg gagttggaaa agccagccgg       120
     tagctactgt ggtgttgttg ggcgtgagcg tttccacaaa tcgggctcgc tagcatacaa       180
     atcgaggtga gtgaaggtca ttaggactgt taagaaatta tattgaaaaa cgaaagattg       240
     agctagttgg aaagaagcca tctcagtagc cattgttttt tctacttttg ctgattgtgc       300
     tttgtgctat tgtaatataa tttatagaaa cagccggtcg ggaacgacgc cgtttaatta       360
     gccggtcgaa agcgacgcca ttgaatcagc cggtcggaag cgacgccgtt taatcagcca       420
     gtgttttgcg ctatagcagc aacacatttc ctggaggatt cggaagacca atgtacgtag       480
     gcttacggca tatttagtga atgagtctgg agaatttggt cactcgctga acgtacagag       540
     ctgaagcaaa tctcgatctg ctataccggt ttcgctggag tggatcagaa acaagcgagg       600
     tccaggcggt gggaacgaac caggactcca aggattgagt gataatcaac aaggtaggac       660
     accattttct tcagttcttt cggtggcagt ttgttttgtg tattttgctg atatcttttt       720
     gcaacagaca tggcgctgat tggaacggta gacccctatg ttcccaatac gtccttttct       780
     aattacgtgg agcattttga gtattttttt ttcggtgaac accattgcag atgataagaa       840
     gaaggattta tttatgaatt tatgtgacat gacagtattt aacgaattga aattgcttta       900
     ccctgcaact gacttgaaga cattgactta tgcagaaata acaaaaaaac taaaagaacg       960
     ttttgatagg gttgaatctg aagtagtttt gcgttacaaa tttgtagaat gcaaagtccg      1020
     ttggaatcag gggaaaatta tattttggcg gttaagttgt taccagaaca gtgtgatttt      1080
     ggtgagttcc gtgactccgc gatacgtgat cagttgattt acggtgtgta cgataaagat      1140
     ttgcaacgac aattgttaaa cgaggataat ttgcttttaa aaacagcgga aaagctaata      1200
     aaaaatcggg atcttgtttc gtctagagct atggcgatta atgcggaaaa tgtgaattct      1260
     gttaggtttc ggttaggcag tcgagatgct agatatgaaa ggcgatatga tgcatataga      1320
     aggaatgata gatcgcgaag ccggaatcga gaccgttata gctggaatga cagaggacgt      1380
     tcagaattgg accgtaaatc tcctggcaaa ggaagatacg ccaatttcac gtgtttcttt      1440
     tgcaatcaga aagggcatgt acagaagaat tgctaccggt ttaaaaacag tcagagaggc      1500
     accgtaaatt tcgtcaagga cagtgcagat cgggaatcag attcggagaa cgttcatgac      1560
     tacttcaagc ggttgagagt tgagtacgac actgagaacg aatcaacagg tcattatccg      1620
     tgtttgatga tcaaatctat taatcgcatt agtgaacctt gtctcctcga tgctattatt      1680
     gagggcagga ctgtgaaaat ggaggccgat agtggctcgg ctgtttccgt aatcggtaga      1740
     aatgaattta tccacctttt cagaaatatc cctattaaag ctagccagcg taaattggta      1800
     gttgtaaacg gatcatcctt ggagatattt ggagttgctg ttgtacaagt gtcgattaac      1860
     aaaagagtag ctcacgtgga gctggtggta ttgaataccg ttcaccattt cattccctta      1920
     ctaggaagag attggttgga cacgttttgt gatggatggc ggcaaaaatt ttgtagtgtt      1980
     ttttccataa atggcgccat aaccaaagaa gaaacaacac tgaatgaaat tcagcagagg      2040
     tatagtaaca tttttgatga caacatctct tctcctatta ttggttttga agcagacttg      2100
     gtccttcgtg aagataagcc agtttttaga aaagcatatg atgtgccata tcgcttaagg      2160
     gaaaaactag ttactctgtt agataacatg caaaaagatg gaatcatcac acctataaaa      2220
     accagtcttt gggcgtcacc aattgtagtg gtggttaaga aagatgagag cttgaggcta      2280
     gtaatagact gcaaagtatc tattaataaa gttttgatac cgaacacata ccctctgcct      2340
     accgcacaag atttgttcgc atctttggca ggttgtaagg ttttttgttc cctagattta      2400
     tccaatgcat acacacagtt aaacttgtcc gaaaaatcaa gaaagtttgt agttattaat      2460
     acaatcaagg gactttacac ttttaacagg cttccacagg gagcatcatc cagtgcagcc      2520
     attttccagc aagtaatgga cacaattttg aaggatttag attacgttta ctggtacttg      2580
     gacgatgtgc taattgctgg gaaaaatata gagcaatgta ggacaagatt gattgaagta      2640
     ttgaaccgtt tatcaaaggc aaatattaaa gttaacttta acaaatgtaa gttttttgtt      2700
     agcagtttac cctatttagg ccatattatt tcagacaaag ggcttttacc aaaccctgaa      2760
     aaagtagcta ccattcaaaa ggctcaagtt ccacaaaatg taacgcaatt gaaagctttt      2820
     cttggttcaa taaattatta tggaaagttt ttaagaaatt tgtcatcgac actgagtcct      2880
     ctttataaat tgctaaaaaa agacaccaga ttcgtgtggg acgggaactg cgacaaagca      2940
     tttgatagtt gtaaaaatca actactgaat gcggattttt tagttttgta tgatccaaag      3000
     ctgccgatag ttgtgtgtgc agatgcgtgc acgtcctatg gattgggagg agtcatatcc      3060
     catgtaattg aaggtgttga aagacctata tgctttgcat ccttctcgct taactcagct      3120
     cagaaaactt atccaatatt acacctcgaa gcactagcaa tagtgtcgac catcaagaaa      3180
     ttccacaaat ttttgtatgg ccagaagttt atcatatata ctgaccacaa accccttttg      3240
     ggaattttgg gaaaatcggg aagaaatgca atttttgtaa ccaggcttca acgctacgta      3300
     atggatttat ccatttacga ttttgaaatc ctttacagac cttcggaaaa gatgtgtaac      3360
     gccgactttt gttcaagatt cccgctgaaa attgaagttc caaagcaata cgaagtccca      3420
     agtataaata gtttgaattt ttctcaagaa ctaccggtgg agttttcgac cattgctaga      3480
     gaaactaaaa tagattcctt tttgcaacaa ttaattttgt acattaacca tggttggcct      3540
     gaaaggattg acaaaagttt taaagacatt tattctcaac atcatgattt agaatttgta      3600
     gatggatgct taatgttcca ggaaagagta attattccta aaaccttaca gccacgaatt      3660
     cttaagcttc tgcatgccaa ccatatagga ttaattaaaa tgaagcaact tgctagacgt      3720
     agtatctact ggtttggtat aaataatgac cttgagagtt acctaaacgc atgtgatgtt      3780
     tgtcagaaaa tgtctgttgg tcaaggacaa aacatcactt ccaaatggat tcctacatct      3840
     cggccattca gtagggttca tgcagatttt ttctttttcg agcgtaaaac gtttctttta      3900
     attatcgata gtttctcaaa atggctggaa ataatttgga tgaagcatgg tacagatgct      3960
     gaaaaggtaa taaagcagtt ttccagtttt attgcaaggt ttggtctgcc ggatgtggtg      4020
     gttacagaca acggccctcc cttcaattct cagaatttca ttagctttct tgaaggaaag      4080
     gtattcgttt catgaaaagt ccaccatatc acccgcagag taacgggcag gctgaacgtt      4140
     tggtaagagt cacaaaagat gtattgaaaa agtttctact agatcaaaat atgaggcatc      4200
     ttgatcttac tgataaactc aattattttc tgtttaatta ccgtaatact tgtttgagtg      4260
     atggagattt tccgtctgaa agggttttca agtataaacc cataactgag ttggatttag      4320
     tgaatcctaa gaaatcatat aagaaacatt tgatcaagtc agacgacata cctgatgttt      4380
     ctgaccaacg tgatgaccga cgtcttgcca cgttaccgaa tactgttatg gaaaatgatt      4440
     tattttcaaa attggtgaca ggggacaagg tttattacag aaacaacaaa ataaccagta      4500
     cagaaagatg gttggaagct gtttttatta aaagactttc tgttaatatt ttccagatct      4560
     cgctggggag tcatccgatc tcggcccaca gggggcagat tagactggcc aaccgagacg      4620
     aacgtcggcg caagatggcg cttcggaaag cagtggaatt agaatccagg cgcggagcga      4680
     aaaggcggcg gattgagtcc gaagatgatc ccccttttct agggttttct ccaccgcctc      4740
     cgatacgaaa tgaattacac cctcaagcgc ttcggtttga ttccacgaat gcaaaacgac      4800
     gaatggctat cccaaatccg atgaacagtg aaagagaact caggcgatca tcccgtatac      4860
     cgaagaaaat caatgataat atgttcgtgt actgtagtaa tcagtgaatt gtttaaagct      4920
     agttctgatc attaaatttt gattaagaat agattgataa gatcaaggta atgaagattg      4980
     attgttaagt tgaattctga tacaaatttt gaatctcttt aaaatatcca atttaaaact      5040
     aaagagggaa ggtat                                                       5055
//
ID   Gypsy-391_AA-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-391_;
KW   Gypsy-391_AA-I; Gypsy-391_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-224
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-224
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 144-144 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 224 BP; 82 A; 37 C; 44 G; 61 T; 0 other;
     tgtaagatca ttttcgatgt taaaggtttc gacactaagg gccaaacccc ttcagctgat        60
     tcaactggtt tgacagttgg cgatcgataa gaagaaaaga agaaaacatt gtatgacagt       120
     ttgtaaagca taaaacgcag agcaaataca cgaagggctg tcttattagc tcaactacca       180
     aactagacac ttgttgttta tttataaata agtagaaagt taca                        224
//
ID   Gypsy-392_AA-I repbase;    DNA;    INV; 4847 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-392_;
KW   Gypsy-392_AA-I; Gypsy-392_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4847
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4847
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >% similar to each other.
XX
SQ   Sequence 4847 BP; 1437 A; 1032 C; 1156 G; 1222 T; 0 other;
     ctggtgtcag aagtggggtt tgagatgagt aagagtgcgt cttccgcgtt accgcaaggt        60
     gataaccaag atggcgccag tgccatcacc cctgaaggac ttgccacaat gatatctgag       120
     ctcaacttat cggtgacaag tatgttcaaa gaactaaacg ggcagatgaa cgatggtatt       180
     cgaaaaattg agtccgaaat tacatctttt ggagctgaga tggaccgtgt aaaaaaccaa       240
     attagccagt tgcaacatat gcgtgagttc agtgcagcta tcaatgagct ccaattttca       300
     tcaaatatca tggaacagag ttcacccgtt actccgttgc aaaacagatt cctcaacacg       360
     actgttgcaa atgaacttgg tgaacctagc tctagatcca cagaacagcg caataatgga       420
     gacagtaata ggccagcacg atcggacgtt ctcaacacca acaacgtagc tgttttgcca       480
     gatgtcgata acgttgcacg agtgaagctc aacccagaaa tatacgacgg tagtaaacgc       540
     tggagggatt atttgctgac gtttgagctg accgccgaaa tcaacaattg ggatggtgcc       600
     ctgaaggcga aatacctggc agcaatgtta agaggtcccg cactagaagt ataccgttcc       660
     ttacctgtta tcgatcggct gtcctactcg caactcaaac tggctatgga cagaagattt       720
     ggcgaacagt tccatcaagc tttacaccat gcccagcttc gagcacggtt acagcagaaa       780
     ggggaagatt taactagctt tgctgatgac atccgtcgct tggtagtatc agcttatcat       840
     gactgcactc cggatgccca ggataaaatt gctatgaacc attttctcga tggattaaac       900
     gacccatcta tccaagattt ggtgcggttt ggattaccaa aaactctcaa tggtgcatta       960
     caatccgctt tgcaatttca aatatctcgg aacgccacgc gaaccacgtt caaaccagtt      1020
     cggttggttc aagattcagc aacaagcgcg ggttccgatt cagaagactc ttccgggaat      1080
     gaagagcctg tatacggggt tcgcagtgcc agcactcaaa cacaaaaccg tcgacgaagc      1140
     aaatatcgtc atcaatccaa aaattcggga aacggtcgga tgccatccta aaggagcgaa      1200
     gggtggtaac tgagaacgct ccatccaata ttttatttgt ccattctctg aatcggcatc      1260
     gtggaagtta cctggtggat gtccttgtaa acggaacggc ctgtgaagca atagttgatt      1320
     gcggtgctgc gatcaccatc atcggactaa aactgtggga gctaatggat gaagtttcga      1380
     ctaagccacc acaatcgaag ttcgtgaaaa cggtatcggg tgaattgcta cctgtgattt      1440
     ctttaaagca aaagtaagtt atataaaaaa gattacatac ataacaattt ccgaatgcgc      1500
     cgttattttt aactttggca aacatcgggt tcaacacatc gcgtggatag tggatatcgc      1560
     cgaagattgt ataattggaa atgacttttt aaaagaacat ggatgtgtga tagatttcgt      1620
     gaacaataaa ctgcgtgtgt ctcgcgataa ggtcgttcga attcgaaacg aaagtgagca      1680
     agttcgtgaa actttcaagg tgtgcgtaac caatcaagtg gagatcggcg gtaggatgga      1740
     aatgatcgtg tatggtgaat gtgaaggtaa acccgaaggc ccattgctgc tcgaaggagt      1800
     tctgcaacaa aacgatctac tggttgccaa aacactagtc gatcctcagc attcgtgcgt      1860
     accagttcgc atcatgaata cttcagaaga ggcatgtata atttctcgtg gtacatctat      1920
     cgcgattggt caaagtgtag cagtaagtga tgcgtcggta gttcgaccgg tgttccaatc      1980
     ttcgactcga gaaattccac gtcatttgga gcatgttttt accaaagctt ccgaacagct      2040
     aacggaagac gaaaaatgct catttgccag atttttgatc gaaaattgtg acgtttttag      2100
     ctccgagtct ggtgaaaccg gacgaaccaa tcttgccaag caccgcatag acaccggaca      2160
     gcatagaccc atcaagattc cccccaggaa gattccctta gcgaaaaggg attgtgtgga      2220
     tgaaatgatt caacgaatgc acaatgaggg catcatcgag ccttcaaaga gtccatggtg      2280
     tgcccctgta gtattggtca acaagaaaga tggcactcaa aggttttgta tagattaccg      2340
     taaacttaat aacgtcacta aaaaggactc ttatccactt cccagaattg acattacgtt      2400
     ggatgccctc gggggatcaa aatggtttac cacaattgac ctacaaagtg agttttggca      2460
     agtggagatg gatacaaaag accgtgaaaa aactgcgttc tcggctggta aggaattatg      2520
     gcagtttgca gtcatgctgt tcgggctctg caatagtccg gcaacatttc aacgactcat      2580
     ggagttagtg ctgaacggat tatcttggcg atactgcttg atatacatgg acgatgtaat      2640
     agtgcattcg aaaaacttcg aggaacatct cgtccaactg agcgatgtct tttcgaggct      2700
     acgacaggca aaccttaatg tcaacccgaa gaaatgctgt ttcatgcaac ggaaagtggc      2760
     gttcctggga cacgtagttt cgtcagaagg tatacagact gacccagaga aagtaaaagc      2820
     gattttagag tggccgagac caaacaacaa aaccactctc cgcagtttct tgggcatctg      2880
     tgcgtattac cgtaagttta tcaagagctt ttctgcaatt gcgagaccac ttcataagct      2940
     aacagaactt aattctccct ttctgtggaa cgaaccttgt gaagaagcgt tcaattcact      3000
     caaacgacat cttaccgaat cccctgtact agcataccct ctcgccgacg gtgagttcat      3060
     attggacaca gatgctagtt actgtagcgt tggtgctgta ttgtcccaaa tgcaaaaagg      3120
     agaagaaaga gtaattgcat attacagcaa aacgctttcc aagtctgagc gtaactattg      3180
     tgtcactcga aaagaactgg ttgcagtatc taaagctgtt caacactttc accactattt      3240
     gtatgggaga cactttcgtc ttaggacgga tcatgctgct ctaacttggc ttacaacttt      3300
     caaggaacca gaagggcaaa tggcacgttg gatcgagagg ctctgccaat acgattatag      3360
     ttgcgaacac agaccagggg tgcgacatag aaatgctgac gggttatcca ggaggccatg      3420
     tgctaccgta ggatgtaaac attgtgataa actggatcag gtgaagatct cgctgaacga      3480
     ccagactgct gaagagattc cgtcttgcaa tttgtttgct gcctttagtg atgtgattgc      3540
     agatgcccaa aaacgagatc cagacttaaa aacagtgatt tgttgggtag aaagtggaca      3600
     aagaccggat tttgaatcga tatcccaatt gagcgaggtt tgcaaatcat attggtcaat      3660
     ttttgccaat ctgtctatcg aaggtggtac actctccagg attttcgtag gaccaacgaa      3720
     acatcaccta cagaccattg taccgaaaga gatgctcgaa gaagtattga accaagtgca      3780
     tggaacccca actggagggc actatggcca aactaaaact ctactgaagg caaaagagcg      3840
     cttctactgg atcggtatga cgagggatat caaaatttgg tgtcttacgt gcaatgtttg      3900
     tgcctccagg aaaggaccac gtaccagatc tcgtggtgaa ctagttccaa cgatcgtggg      3960
     tgaacctttt gagaaaattg gcatcgacgt tcttggacca tttcctctta cagagaaggg      4020
     taacagatgg gtcttggtaa tgactgacta ttttaccaaa tggcccgaag ctgtagccct      4080
     accagttcaa acagcagaag cagttgctga ggcgctctta gaagctgtcg tctctcgctt      4140
     tggtgtgcca cgacaaattc attccgatca gggtcgaaac tttgaaagtg aagttttcca      4200
     gaagcttttg aaattattgg gagcgcgcaa aacgcgaacc actccattac atccacaatc      4260
     agatggcttg gcagaaaggt tcaaccgtac tcttttggac tatctagcaa agtttgtgga      4320
     tcgccagcaa agcaattggg ataagttact gccactggtc ctactaagtt atcgagctgc      4380
     agtacatgaa acaacaaaat tcacccctac aatgctgaat ttaggtcgcg agttagttct      4440
     gcctgtggat ttgtggcgag gctctcctcc tgatagtgat cgatcggtgc cacactatgt      4500
     ccaagagaaa atcaacgcaa tggaatcaat tcgtgaagca gccaggaaca agatttttgt      4560
     ggcagcggaa tccatgaaac ggcgatatga ccatacagca aaccaaccgg attatcagaa      4620
     gggtcaactt gtatggctgc gggttgacag cgtagaattg gaagatgtcc taagcttcaa      4680
     tgtgactggg agggacctta tcaagtcttg cgtaagatta gtgatctcgt atatgaaatc      4740
     agactcgaaa acggaggaag aaaaaaggta gttcacgttg ataggctcgc cgagtataaa      4800
     ggcattccta atcttgtcgg ggcgataagt gccttagagg gggatag                    4847
//
ID   Gypsy-392_AA-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-392_;
KW   Gypsy-392_AA-I; Gypsy-392_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-256
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-256
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 145-145 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 256 BP; 78 A; 48 C; 60 G; 70 T; 0 other;
     tgttacggat attagggatg acctccctgc accaaccggt gaattcatga attgagagac        60
     aaaagattat tgtagccata tgtatgggtc agttgaaaat gaatatagaa ttcgtgtgga       120
     tcgtcataca gaaacgctcg tcgtaatttt atcttttatc cgaatatcgt cgcgtatcgt       180
     tagctcgaaa gtatccgagc agaaagttaa tccggaaagc cttcggccgg caaggaattt       240
     gacggaaatc gtcaca                                                       256
//
ID   Gypsy-393_AA-I repbase;    DNA;    INV; 5918 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-393_;
KW   Gypsy-393_AA-I; Gypsy-393_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5918
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5918
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 122-122 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5918 BP; 1876 A; 1138 C; 1352 G; 1548 T; 4 other;
     ttggcgatcc tgccatgata ttggtaagtg aaatataaaa agaataaatt atattcattg        60
     cccaaaacga aaaaaaaaaa aaaaatgagg caaagggtac atgaaagctt ttagaagtgt       120
     tgccaggaat atcaacattg tatatcttgc aacttgtaac gattttatgg attgctatgt       180
     tgtataactt gaactgctgt ctaccatttt ttttttcttc aattaaaata tacaaataaa       240
     gagaatatac aagcaatcgc aaaattgaca ttatcgtttg agccggaaaa gtccatggcc       300
     aaacaaacat tgtctgatta gtggctgaac aggagaaggt ccattgttgc cacgcattat       360
     aaagtagagc cgagtttagc tcatggccaa taaaaaaaaa aaaaaaaaaa aaaaaacaat       420
     gatatctgaa cataactgat tttcaactgg caaagaacta aacggatatg gtcaaaagtg       480
     atacatacaa gagtacgctg agtatagctc acagctacaa ttacgctgag tataagctca       540
     tagctaaatt gaataaatgt aaactgccat cacgcaatag tcaaaatgaa acataaaaag       600
     tacgctgact atagctcaca gctacagagt aaatataaac tgccatcact gcaagcaaaa       660
     aaaaaaaaaa aaaataaaca cgaatgtcca acttcattgc aatgtgaaaa taaaagctct       720
     tgaatcggca catggtgwgc gaaacaaaac aaaaaatcgt tgtgattaaa aagagacaac       780
     taacaaagcg agagcgactg acaataagcg cagtgaattt attgactact caaacacgct       840
     cttcgggata atgagcaaaa tatgagtaat agaatatttt aaggacagaa tttgcttaga       900
     ttttgtcagt agcttttctt tagagtgtaa gcattcatgc atgtcatatt ttttgcactg       960
     gggtaacagc ttctgcgctt gcgctcaatc atctatcgga ctcttttcaa cttctggcat      1020
     tcagtttgat gtttgtcaag tagcataaca ctgcaggtag aagaagacag acaaagttgt      1080
     tttctgtgtt cggaaaaagc tcatttcagt gtggcggcat agtgaaaaaa agtaaagtaa      1140
     gtcactgttc gtaacgtttt tgatctatta ttaccgtgaa aatgagtggt acttggcgtg      1200
     aaagcgagcg ttcatcgtcg gaggaatcag acacggaaga cggtggaatc agtagtttgt      1260
     taccggctgt aaaacaagaa cagaaacgtc cagctacgtc ggagtggtta tcgggtacgt      1320
     ggccattgaa atcattcgac gaaggtttgc cgactaacaa gcgaaaagca gaatggattc      1380
     gttttcgcga tcaatttgag agaattgtct cgtgtaaagc gccggttagt cctgcgacga      1440
     ggctcacagg aatgaaaatc ttcgccggga attacctgtt gagcattatc gaattgcacg      1500
     aaaagttcct taagcaggat tcgaatgatg tttatgctga tactgtttct gcattgaaca      1560
     ggtaaagttg caaggttctt attttccaat tcatctattt tttctattag tgagactaca      1620
     agattggaaa tattattatg ttgttatgct attttagata tttcaatcag acatgcgatc      1680
     ctgctaaaga acgtctgaag tttcgcgaga tgcgtatgaa ttcaaacgaa tcattcggcg      1740
     attgggtgct acggctagaa gcacaagcaa aattttgtga tttcgccgat cagcaacgcg      1800
     aagaggaatt tctgcaagcg ctcttaagac gttcaattcc agaaatagcg gacaaactct      1860
     atgagatgtc agatatgctc gataataatc tccaacgaat tatcaaacac ggcaagcatc      1920
     tggactatat ccgaacggaa gtggccgagt tgaacagagt accgaaggat gtgacaagct      1980
     tggacagggg cgatgaaaat gttgagatcc gaccggtcaa cgctttgcat tcaacaacac      2040
     caaagcaggg attccatcgt tttgaaccgt atcgcagaaa acagcaacca tcgcagagtt      2100
     tcaactctcg ttatcgatat ggtaatacgc agcagcgaga tgcccgtggg aaccatgatg      2160
     ttcgatcttg cacaaaatgt ggacgtttgc atggccctaa ggaatgcaaa gcatttcggg      2220
     tgaaatgcta ctcttgcgga aaagttggcc attacgccga gttctgtcgc acaccgaggg      2280
     gtactgatgc caattatcct gcgcgaacca acgacgttaa agccgaagct gaacgaatta      2340
     atcaggtaga taatgaaaca acttcacagt aaaataccag gtgcctacta atattgtcga      2400
     aattctaatc agggcgtgta gtaataaata acgttctaaa atgttttatt tttattattt      2460
     ctgtttccat ctttgtttac agttgattac acaaaagcct actcttcaac gatctttgaa      2520
     agatcctagg cttgtcgatt gcgtaatcgg tactgagtgc atcaattttt taatagattc      2580
     tggtgccacc gtgaatacta taactgtcga tagctggaac aagatcaaga aaaattgtag      2640
     atcagttatt catgatttgg tggcctttcc tgaagaagtc ctgaaagcgt acgcccaaca      2700
     gggttctctc gaggtcgagt gctcttttag agcctatatt ggcgtggcga atcatagtgc      2760
     atcgttacat ttggccaaat tttttgtggt gaaagggact caattatcat tgcttggatt      2820
     tgaaacatcg caaaacttga atctaattcg ttttggtcct ccaaaaacag atgaggatag      2880
     tgaaaaaatt cagggaccgc aggctatctt taatctcagg acggagacta aggagtttcc      2940
     gaaggttcga accgatccaa tcaaattcaa gattgacgag tcggtgtctc cgatgcaaat      3000
     tattagatac aacattccga aagcttttga gaatgctact agcgagaggt tacgagcaat      3060
     ggaactgaaa ggkataatcg agcgtgcgga taaggaacat cataccatta cacacgtctc      3120
     accacttgta ctggtaccaa agggtacaaa tgacttccgc atcgttgtcg attatcgggc      3180
     agtcaacaaa gcgattattc gggagccgta ccctatgccg tcactggaga aaatctggtc      3240
     agacattccg aaaggcacga tgttcttcac aaagcttgat ctgaaggacg catattttca      3300
     tgttgaattg catgaaagtg ttcgccattt caccactttc atgaccgcca acggacttat      3360
     gcgttttaaa agactgcctt tcggtctgtc atgcgcacct gaacatttcc aamgggtgat      3420
     ggagaaaata ttggttaaat gcaagaacgt catagtttac ctcgatgaca ctcttattta      3480
     tgggaggaca ctggatgaac tgaggggaaa tgtagccgct gttaaagaag cgttacatga      3540
     gcataatctc accataaatg aggagaagtc gaggtatgac cagcaatcag ttgatttttt      3600
     ggggtttact attgacggaa gcggaattgt gcccacccag cagaagatct ctgatatcaa      3660
     atcgtttgaa cggcccaaaa acacgtctga agtccggagt tttctaggca tgatgacctt      3720
     cattagcccg tttattcgca attttgccca taaaaccaaa ccgttacggg agctgttgtc      3780
     ggttgattct aaatttgaat ggaccgaaga acgacagatt gcttttgacg cactgaagga      3840
     tgcagcggaa aatgatttga ttaaacgtgg ctacttcgat gagaatgacg ataccatttt      3900
     gtacaccgat gcgtcacctt ggggaatcgg aggagttcta gtacaggagg ccggtggtac      3960
     tgaaaatcgt cggataattg cttgtgcttc gaaaagtctg accgaagcgg agcgtcggta      4020
     ccctcagttg cacagggagg cactagctat catctggtct atggaacgat tcgcgtacta      4080
     cctgctagga aggaatttca cactaagatg tgacaacgaa gcacttatgt tcatgactaa      4140
     ggcaaagggt aaagatgtcg gcaaacgaat tttatccaga gctgaaggat ggatgttgcg      4200
     gatggaccac tattgcttca agttcgagca tgtagcaggt atgaataaca ttgcggatgc      4260
     accttcaagg attggtagaa tacggagcga tccgcatttt ggtatggata aagaacccca      4320
     cgagctgtgt tcagtcacag cggatctggg aattattaac gatcatctgc ttgctttgac      4380
     cacggcggag gtcaaagaaa cttcggccaa cgataacgaa cttcaaactg tgatgaaatg      4440
     gatcaaaaag accgagaaat ggccggaaca aatcgcaaga taccaagckt tccaacgtga      4500
     catgtatgtg caaggtggat tgttgatgaa gcaggagaaa atggtcctac ccatcctttt      4560
     gcgaactcgt gcgctgcagt tggcccatcg aagccaccct ggaatgtcca ctatgaagaa      4620
     ctttttacga caagggttat ggtggccaaa tatggatcga gaagtggaag acttcgttcg      4680
     aagctgcccg gaatgtcagc tggtaaccgc agcaaatcac ccattgccta ttacgttgac      4740
     ggagcttccg aaaaacccat gggattacgt ctcaatggac ttctcaacag catcggatac      4800
     acacaattgg aaagcccttg ttctcacaga taactactcg aggttcttag ttgcgttgcc      4860
     tatggagaaa acagatgccg aagccgttaa gaatgcgtta aagcgggttt tcaacacgta      4920
     ctacattcca aaaacaatga aagcggacaa tggtcctccg tttaacagcg ccgaccttaa      4980
     gacatggctg cagagtgtgt ggggagtaaa gttaattcac agcacaccat tgaacccaac      5040
     agagaatgga ctagttgaaa gaagcatgca gggtatcaac aagatatctg ccatcgcgcg      5100
     cttggggaaa aagaattgga aggaggctct ggccgagtat gtagcagctt acaatacatg      5160
     gccgcatcat gttacaaagg taccgccagc tgaactgatg ttcggaagaa cggtgcggag      5220
     tttattgcca gatgtacgaa cggattctaa gcaacttgtg gacgaagaac tacgagaccg      5280
     agatcaatct tccaagttca atcgcaatgc taaggaagac gttaggcgca aagcttctga      5340
     actgaatatt aaggtagggg acaccgtttt ggtcagccag gcgaaacgtg ataaaacgga      5400
     tacacaatac agaaatgctt ttcatgaagt cgttaaaatt actggagctg gacgagcgac      5460
     ggttaaggat ttaaccacgc aaaaggtcta tgaccgtaat gtgaaatttc tgaagaaatt      5520
     tgtgaagcgc aagatgagta tgtcagattt tgtttaatgg attttttaca attctatgac      5580
     aatttttcct aatatttgtt ttgttttgat ttttttttta ttagctgcac cagaggacgg      5640
     gttaggtttg agtccaggtc atacctattc tgcgacagag gaatcaggag tagccgacga      5700
     cgtacaccac cagtcatcct cgcaaccacc ggtgatgacc caagccggta ctcccattac      5760
     ggctgatgag gataaacagc ccttatccaa acgcagagac gctaggaaga tcaagaagcc      5820
     gcaaagatat ctcaatgctg tgaacaataa gattttgtaa tgataattaa tattgtaaac      5880
     cattataatg ttatccatgc tattattgaa ggggagga                              5918
//
ID   Gypsy-393_AA-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-393_;
KW   Gypsy-393_AA-I; Gypsy-393_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-176
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-176
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 146-146 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 176 BP; 49 A; 13 C; 56 G; 58 T; 0 other;
     tgtggtattc ggatttgagt atgaactgag agcggtttgg gggtttcgga tggagcgtgt        60
     ggtagatggt ggtggagtcg gaaagagaga aatatagagt gagtgttatt ttgtatcatt       120
     ggaaaacata gtggttttaa ttattaataa ttactgatga tcctgaggat atcaca           176
//
ID   Gypsy-394_AA-I repbase;    DNA;    INV; 6193 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-394_;
KW   Gypsy-394_AA-I; Gypsy-394_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6193
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6193
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6193 BP; 1908 A; 1346 C; 1429 G; 1510 T; 0 other;
     ttggcgatcc tgccaggagc ctcctgcgac atttacaaac tacatctttt gaaaatccta        60
     tttttttctt cgatttgtgt tacaaaccgc cacagaatgc atctaaaaga gcaccggggc       120
     ttcgatagca attcatatga aaaattataa aaatgtttgg tttgtggtta gaaacaccac       180
     aaggtgctct ggaagtgcac cggagcattg aaagcaacac gtatgaaaca tatttggttt       240
     gtggttatga acaccacaag gcgctctgga agagtgctgg agcttcgaaa gcaactcgta       300
     tcgtatacat taaatacttt agatttgtgg ttatggacac cacaaggtgc tctagaagag       360
     catcagagct acgaaagcaa tgcgtatgaa attatctggt ttgtggttgc gaataccaca       420
     agccgctctg gaagagcggc agagctacga cagcaactcg tgtggaaaat ccaaaaaaat       480
     cgtatggttg gtgattatga actacaccag gtgctctgga agaccaccgg agctttgaaa       540
     gcaacgcgta tgacgaaata tttggtttgt ggttatgaac gccacaaagc actctggtag       600
     agtcctggag ctttgaaagc atttcgtaca gcaatatttg atttgaggtt aagaaaataa       660
     aaaaaaacat ttcgttgagt ttctcctgcg tggaataaaa gatgtgatgc gttggattct       720
     ccccatctaa aataatctcg ttatctttca cagatttttt catcatgtct aacgttggaa       780
     aatacgtgca ggcaccaacg ccctacgacg atttggatca atgcgaaatg ggcgaagagt       840
     tgtacgatga aggtacggtt gactttgagg atctggaagt ggctgcccat gaagtggtgg       900
     aaacaaatgg accggcagtt gaaaatgatg atgctgacgg aagattgcat cgcctggaga       960
     cgatgatgga gaatttcatc gcacggcaac cttctgaagc ttgtccgaca tcaagtaaag      1020
     atgacgaatg tgacaaaccc gatttcgaac catccccgga ctccagctcg aacagcaaaa      1080
     cgtgtaacat ccgttgggac cttatcccta aattcccgaa ggacatccct tcgaacaaac      1140
     tatgggagaa ctggcaaagt ttcatcgaaa actttgaaat tgcggcatct ttatctacgt      1200
     ttgccggatc tgccgatcgc gcgaaattgc tgtacttgtc cctgggaaaa aatctacagg      1260
     acatcatcgg cgcagcagac cttcgccccg actaccggga ccccaagtgc tactctaagc      1320
     tagtcgacgg agtgaataag tatttcaggt cgatgactga cactgcagcg gaacacgatg      1380
     ccttcctagc tatgcgccaa atggatggtg aacctatagt ggcatttcat gccaggctga      1440
     ggcaaatggt acggctttgc gattacagcc catctgacca ggtgcgtttt gtactcgccc      1500
     agctgcttac tgggatgcgg aaccaggagc tagcattggt tgctagaaca tatgaacacg      1560
     acgcgaacaa aattgtacaa gccgcaacaa gagtcgagac atatgaagca agcaagcaca      1620
     acgtgatgaa gaaatctgct gaagtcatgg cggtgaaccg gaagcgagaa tcaaaccgcg      1680
     aacgtgagcc accctcaaaa atgcgcaaag aggaggataa tcgtgaatac gaagccagga      1740
     aatccagagg accaccacgc gaacatcgtc aagggcagcg tactcgttgt tggaggtgcg      1800
     gatttttgtt ccacaagaac aagatatgcc cagccttgga caagcaatgt agtacatgtc      1860
     gaaaggtcgg acattttgcg gtaacatgcc gcaataaggt caagagaact ggcgtcaaca      1920
     atattcaagg aaacccacga gatcacaaaa tgcgtagtcc ctcgccagca tggggtaaac      1980
     gttccggtga tgaacaggta taagttgttt gtaacccttt aattctaaat gaataaacat      2040
     tgaaaccgaa tgatttcttt atatctgatt attaacgaat atacccttgc tactcgtgcc      2100
     gtatactcct tttttttttt tagcaaaaag acgctaccgt gtccttaaac gacgctattg      2160
     ttagatgccg cctcagctct tctagccctt acaacttctt ggtagactcg ggcgccgatg      2220
     tgaatatcat cggtggaagt gattggctac gcttagaaag cgaattccgt agaggcttcg      2280
     ccaggctcaa tccgatcgac catctcgtta ctagagagct ccgggcatat gcgactcggg      2340
     caccaatggt agtgaagtgc gcttttagtg ctgaaataga agtgatagat gcatctaagc      2400
     cactggtaac agcggagttc ttggttgtaa acgaaggtac gcggtcactg cttggacgac      2460
     gaacagcgag cgaactaaag ttactgaaag ttggtctcgc agtcaacagc tgtgagcaat      2520
     ctgatacgga taaagtcttc ccaaaaatgc caggggttac tgtcaaattc agcgtggaca      2580
     cttcggtgcc cccagagaag aacgcatact acaacgtccc agcagcatac cgggaagccg      2640
     ctagaatgcg cctcgaggac atggaggccc ggggtataat tgaacgcgtt ttgaaggcac      2700
     ctgaatggat aagtggcatg tctgcggtgc ccaaagggaa aactgacttc cggcttgtag      2760
     taaacatgcg agcaccgaat aaagcaataa agagggagta ctaccgcatg ccattgatcg      2820
     acgaaatgaa gataaaactt catggatcga agtactttac gaaactagat ctcagcaatg      2880
     catactacca ccttgagctg tgcaaagaat cccgcgacct gacaacattt ctggcagaaa      2940
     atgggatgta ccggtttacg cgattgatgt tcggcgtaaa ctgcgcccct gaaatttttc      3000
     agagggaaat gtctcgtttg tttcaaggag ttgaaaatat tatcgtatac atagatgacg      3060
     tgctcatatt cgccgacaca ttggacaaac ttagatcaac cactggacag gtgttgaaaa      3120
     ttttacgtgc aaacaatctg acccttaacc aagacaaatg tgagtttgat aaggaattcg      3180
     tcacattttt gggccatggt ttagatcaaa aagggttcca tgtggatgaa gcaaaaataa      3240
     aagcaatacg acgatttaga ccacccacca acgtatcaga attgaaaagc ttcttagggt      3300
     tggcttcctt tattagtccg tatatcaagg actttgctga cacctcaagt gctctctggc      3360
     atgttacaac ctccaaaaat tggtgctggg gcccccagca actcgctgcg tccgaagcgc      3420
     tcaaacacag gatcacaaac tgtacaacta cattagggta cttcgctgag gatgaacgta      3480
     ccattttgta cacggacgca tccccaaacg ccctaggcgc tgtcttagta caagaaagcg      3540
     caacccaatc acctcgcatt atcagttttg catcgaaagc attgaccgac actgaaaaga      3600
     ggtacgcaca aaatcagcgg gaagctttag ccacagtatg ggcagttgaa cacttctcgt      3660
     tcttccttct tggtcgtcat tttacgctgc gaaccgatgc tcagggtgtt gtatttattt      3720
     tgaatcgagc acgggaaaac tcgaagcgag cattaacaag agcagatggg tgggcgcttc      3780
     ggcttagccc atataactac gatgtggagt acatccgtgg tcgcgataac atcgccgatc      3840
     catcctctag attatacacc ggcagcgatg accctttcga ggaacataat agtccttggg      3900
     aaatcgccgt tcttgaagcg aactcggttg ggtttctaac cgagaaagaa cttcaagatg      3960
     cgacagctgt agatgaaaca ttgcaagctg tgatcgacgc cctagagaca cgcgtatggc      4020
     ccaagaatct taggaagttc gaaagtgtag cggatgatct atccatacac aacgggattg      4080
     tagtgaaaaa aggatgcgcc gtggttccta ccatgcttcg gaagaaaacg ttgaacctgg      4140
     ctcatgatgg acatccaatg acagctaagc ttaagagtat tttgcgggag cgcgtatggt      4200
     ggcctggcat aagcttggat gcagaggagt gggtgaaaac ctgcaaaatt tgcgcaacaa      4260
     acgggctgcc cgaaaaacca acgccaatga ggagaatttt tgctcctcaa tctgtatggg      4320
     aaaccgtagc tttggatttt aacggcccct atgctagatt cggaggaatc tcaattctgc      4380
     tcatagtaga ttatcgatcg agatttttga tcgctcgacc ggttaaaacg acgagctttg      4440
     aacagactaa gcaggttctt gaagaaactt ttgcgcggga agggttcccg aagaatattc      4500
     gttccgacaa cggaccacca ttcaacggtg acgaatataa aaattattgc gccgatcgtg      4560
     gcattgaaac cacatactcg acccccttat tcccgcaaca gaatggactc atcgaaaatt      4620
     atatgaaact ggtcaacaaa gcgatggcat gtgcagcaag taaaggtgta agcttcaagg      4680
     acgaattgca agcagcaatc aatgcgcaca acgctgctgc acactcagtg acaggatttc      4740
     ccccagagga ggtcatgcta gggcgcaaag tcaagcgtag gctcccccta ctgcgacacg      4800
     aaaaatcgag ttacgacgag gaacttctca accgcaggga cagatcagaa aaactgaagg      4860
     ctaaagaacg ggaagattcc agaagaggag ctagaaagtg ccgggtgggt ccgggagata      4920
     cggtcattat tgaacgatta acacgagcga aagcagagag caggtttgac ccacagagat      4980
     acaccgtaat caaagaggat aacggaagcc ttattctaca gaatgacgac ggtcaaactg      5040
     ttaagcggca tgtcagccaa accaaaaaag ttagacagtg gcgtgaatca tccgaagaac      5100
     gtgaaattgt tgtcccgaag aggcaaaatg cccagaacaa ctcctcgatt ggcacaccta      5160
     agcggccacc cagagcaaga aatccaccca gttacatgaa agactacgtg caaatgctcg      5220
     agagctaatg cacacagttg tccaatccaa atctctaaca ttagatattg cattgcatat      5280
     ttgaactcct taacaatgcc ttttaaatac acatccattc atttaattga tttcctaaaa      5340
     gaaaagaaga aataaaaatt tggactgggt tattatttcg acagacatca atgaaagtct      5400
     aacacaactt tttccattca tacttgtctc gaacactgtg tgctgagcaa aaaaaaaaca      5460
     accacatcaa ccaatatttt gcaaattaca tacctaccat gaaatcgctt tatccgtaat      5520
     atcgtcaccg aacgatgcac atacgacccg caaatttcca agatacaatt accgttgtct      5580
     aaggacagtt ttatgcagat cgaaaggtac attcaatgta aaataactgt aaaagaacag      5640
     taagcaaatc ccgctgagag ctgacgttga tgttggtaaa taccgtaaat acacgcaaaa      5700
     aaattgtgcg gtaaaaacta ccattttagg gggttaactt aagcgctcgc accggcaatt      5760
     ttcagcagac cagaaatgtg cttgatttta ccatgtctgt tgtcgaaatc agattgttgt      5820
     aaattctttc tttcaagtgt accagtaatg tgatgggata taccataaac atagtaattt      5880
     ggtctgaaat tccatggtag tttcaagaat gggcatagtc agctacaata gtaattttta      5940
     ccacagtatt ttttcccgtg tacgtaagga atctcaaaac aatgacaatt agaatgcatt      6000
     gaactgaaat ttgcatcgat acatgacttt tgttttgaca gtagcgaaac tctccacaag      6060
     gatgtgaaat atttcagagt taatacacgc ttgcctagaa tcacgactaa tttaagattt      6120
     tcactcaaat ggcaatgcac ggaaataact tttctggatt tttttttctc ttttttcgta      6180
     tgtagaaggg gaa                                                         6193
//
ID   Gypsy-394_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-394_;
KW   Gypsy-394_AA-I; Gypsy-394_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 147-147 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 216 BP; 58 A; 62 C; 48 G; 48 T; 0 other;
     tgtgtggtat caatacccct cgtaaagggt tgtgtgacat gtgctataaa acccgaacgc        60
     tgttcggctt tcggacacga cactcaatca cgacatcacg aacactctcg accatcaaga       120
     attgtcctct tcctattctg accgtcatcg agtgaggacg cttgggtaag tcactgctcg       180
     gcgcaccaac gaacaaccgg atggcaaaac cgcaca                                 216
//
ID   Gypsy-395_AA-I repbase;    DNA;    INV; 6175 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-395_;
KW   Gypsy-395_AA-I; Gypsy-395_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6175
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6175
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6175 BP; 1887 A; 1330 C; 1436 G; 1522 T; 0 other;
     ttggcgatcc tgccaggttt gccattaact atggcaaata aaatgaatac tggagataaa        60
     atctcaaata aaccaggtcg taacatacag cggattgaga ctactgctta ggttatggta       120
     gatatcatcc gtgacgggtg gaaagggata ttcactctga atttgttcgt gttagtgatt       180
     agctgaattg catgtatggc ggaaatttgc gttcaagggc gttttgggac aaatgccaaa       240
     taaacgaaaa ttactgttta ttcaagaaaa gaagcgcaat tgatagcaat tggtatgggt       300
     ggaaagggat atctactcag aacaaactca ttttcctgac gaattagtat tatggtggaa       360
     atgcgcttta aaaaaaatcc ttcgcgggtt gggacaactg ttagaagcga aactgtctta       420
     cagcgtcgaa tagattggca tacgatacag tttttgatca attattgtga ctatagaatt       480
     atgacgtgaa tttaacgaaa tccacaaccc gataaaaata atgagaaact gaaaatcaaa       540
     aaactgcgac ttcacttata tggccattga ttttgttgaa gggagacaca ttttttaggt       600
     tatttagtgt gatgggacgt acaccgatcg atcattgata ttcatcaaaa ggactgatac       660
     caatgttttc tactttcata gatttcgttg ctcaaaatgt cgatccatgg aaagttcgta       720
     cgagccccaa cttcaacagt cgatatgttg gaggagagaa atgtcgatga ctcgttctac       780
     tctgatgagt tgttttcctc gggagttggt gccgaggaag tagttgagtc ggttgataca       840
     cagttcatcg aatcggctga catcatagaa gaagaagtcg acgtctcgga tgaagaaggc       900
     cagaacgaaa tgggaccaaa tgaggcgcca tccgtagcag caatagatgc gagcatgcat       960
     gaaagggtcg ccaatatcga gaaggtaatc gcacgcctcg cgcgttcgat ggaaacttca      1020
     aaaggtgcca ctcaatcaac agacgaacac ggcacacgat ccgatcgtga acagctggtt      1080
     gagaagggct ggggaagcac tggcgaggat gtcgtaacaa atcgcaccac ttcaagctca      1140
     gcaccaagtc tgcggtggga ccaaattcct ccgttcccga aagatgttcc ggccaacaag      1200
     ctttgggaag cctggcagcg attccgggaa aacttcgaga tagcagtatc gttatcgacc      1260
     gttaccgatc ctatcggccg agccaaatta ctcttcttgt ctatgggtcc ggatttgcaa      1320
     ggcatcgtga gggctgccaa gctacggccg aaccttgacc attcgaattg ctacaccgtt      1380
     ttcgtaaata atgtggacag acatctgaaa tcgatgaccg acacatcatc cgaacatgaa      1440
     gccttcttaa gtatgcgtca gaagattggc gaatccgtgg tctccttcca ttcaaggctc      1500
     acagaacagg ctaccctatg tgactttgct ccagctcacg aagatcgttt tattcatacc      1560
     caactgctca aaggtatgct gaataaggag ttggctagaa ccgtccgaac gttcgggtac      1620
     gacacgaact acatcgtgca gtctgcgact agagatgagg cctacgaagc gggaaggaag      1680
     cataacgaaa atcacgatca ggaggctttc gccgtcactc atcgaaacaa caacgaacaa      1740
     cgcttcaaaa agcctatgcc aatggtgcag aatcgagtaa ggtcgaagga atacgaacac      1800
     aaatccagag gatatggtca aggtcgacgt tcgcgttgtt cgagatgtaa tcgcttgtct      1860
     cattctggag gacaatgccc cgccgtcaac aagagatgca acagttgtgg caaccttggc      1920
     cactttgcgg cagcttgccg taaaagacgt gtcaaccacg tgcaagaagg ccagaacgag      1980
     aaaaagaagc gagatgattc gttggattgg accgaacaag aaaacgctgc gcaggtatga      2040
     ttagttgtta caaaacctac ttgaataaaa cagatactcc taagaattat acaaatgaaa      2100
     cataagttat ccgaaactca cgtattactt acagggcata aactcgatca cgattgaaga      2160
     cgtcttagta gactgccgca taggatcttc aatccctatc acgttcttga tcgactccgg      2220
     atccgacgtt aatataattg gtggatcgga ttgggcaagg ctacgtgatc agtcagaaaa      2280
     gggtttggtc aaactggaaa cattggcaat gcccgaaaat caagaacttc gagcatacgc      2340
     tgttagaaca cccatgaaag ttcatcacgc tttccgggct caaatcgaag tagctggtgg      2400
     cacaaaaccg attgtttcag ctgaattcct tgtagttgaa gagggtcgca gatctctact      2460
     cggaagatcg acagcaagtg aaatgcgttt gctagaggtc ggattgggag tttacaattg      2520
     cgaggattca actttgaccg gggtatttcc aaaaatgcct ggtataaagg tgaaatttag      2580
     tgtggataaa tcggttcctg ctgagaagaa tgcctattat aatgtgccgg ccgcatatcg      2640
     agagggagca aggaagcgtt tagaggaaat ggaggctctt ggcatcatcg agcgagtcca      2700
     taccgcacct gagtggatca gcggtatgtc ggccgtaccg aaaggtaaaa acgacttccg      2760
     gttagtggtg aacatgcgtt cacctaacaa ggccatcaag cgtgaatatt tccggcttcc      2820
     tctgcttgat gagattaaga tcaagctaca tggttctcgc tttttcacaa aacttgatct      2880
     tagtaacgcc ttttaccacc ttgagctcgc caaagaatca cgagaattga ccacgtttct      2940
     gacggagagt ggtatgtacc gattcactcg attgatgttc ggcgttaact gcgcccccga      3000
     gatcttccaa cgggaaatga gtcgcttgct cgaaggaatc gagaacgtcg tcgtctacat      3060
     agacgacatt cttatcttcg ctgacacacc agaacagctt cggttgacca ccgcaaaagt      3120
     attggcaata ctaagggaaa acaacttaac cctaaacgtt gcgaaatgcg aatatgagaa      3180
     aactcatatt aaattcttgg gacacgagct gaacgagaat gggttccacg tggacgaagc      3240
     gaagaccaaa gacatccgca aatttcgcca gccaactacg gtatcggagc tccgcagttt      3300
     cttgggccta gcgtcattcc taagctccta catacagaat ttcgcggact taacaagctc      3360
     attgtgggcc gtatctacag ccaaaacttg gttttggggt ccagaacaag caaaagcgtt      3420
     caatgaggtg aaagaacgga ttgccaattg cactacgacg ctaggatatt tttctgatag      3480
     cgacagaacc atcctctata cagacgcatc tccggtggcc cttggcgctg tccttgtgca      3540
     gcacaatcaa cgtgaatccc cgagaatcat tagtttcgct tcaaaggctt taactgcgac      3600
     cgagcaaaag tacgcacaga atcaacgcga agccctaagt gcagtatggg ccgttgaaca      3660
     tttttcattc ttccttcttg gaagacgttt caccttacga accgacgctg aaggagtcgc      3720
     cttcatctta aaaagaactc gtgaaaactc aaagcgtgct ctcactagag ccgacggttg      3780
     ggctctcagg ctgagcccat acgactacga cgttgagttc gtacgtggtc gagacaatat      3840
     tgcagatcct tcctctaggc tatacgttgg cgtcgacgag ccttttgacg aatatcgaag      3900
     tccatgggaa atcggatgtt tagaagtgaa cgctgcgggt ttcctcactg aatgtgaaat      3960
     cagagatgca acgaccaaag accgagagct gcaaagggtt atcgattcac tcgagacgga      4020
     tgactggcct gctgatctga aaaagttcaa agctgttgcc gacgatttgt ccattaaaga      4080
     aggaattgtc gtcaaaaacg gttgtgctgt tgttcccact ctgctccgtg aaaagaccct      4140
     cgatttggcc cattatggcc acccgatggt tgccaaacaa aagagcatcc tcagagagcg      4200
     agtttggtgg ccaggtatgg ccagcgctgc agaagagtgg gtgaagtcat gcagaatctg      4260
     tgccacgaac ggcagacccg aaagaccaac gcccatgcaa aggatttttg ccccacaaac      4320
     agtatgggaa accattgctg tagacttcaa cggaccttat atgaagtacg gtggaatctc      4380
     agtgttagta atcgttgact accgatcccg ctacttgata gctcggcctg ttaaatccac      4440
     cagctttgag tacaccaaac gagttttgga ggaacttttc gaaagagaag ggtatcctaa      4500
     atgcatacgc tccgacaacg gacctccgtt taacagcgaa aactactcga gcttctgcca      4560
     ggaaagaggc atacaaacaa ctttttcaac accacttttc ccccaacaaa acgggctggt      4620
     ggaaaattca atgaaaatca tcaaccgagc aatgtcagca gccactagcc tgggcacgga      4680
     ttacaacgat gagctgcaag ccgcagttaa cgcccataac gctgccgccc atacagtgac      4740
     tggaattcca cctgaagagg tctttctggg aaggaaaata aaacgccgat tgcctctctt      4800
     gtcccataag aaagcagatt tcgacgacca tgctttggat attcgagata aggaatcaaa      4860
     actacgcggt aagtattatg aagacgcaag aaggggtgca aggaagtgca atgtcaaacc      4920
     tggtgacacc gtgatcgtcg aacgattgaa tcgaagcaag ggggaaacga gattcgctcc      4980
     acaaaagttc acggttctgg aagagaacaa cggaaatatg gtactcaaca acgacgaagg      5040
     tcagatcctt aagcgacacg ttacgcaaac aaaaagggtt tccaattggc gtgatgaagc      5100
     cctaaatgtc cctgttcctg agaataccga acgtccatca cgagataagc gagcacctgc      5160
     atacttacaa aactatgttc agtactttgg tgaatagaac tatgttgtga ccgagacaat      5220
     cgataaaata aacactaaat ccttgaaatc caatcattca acctcggtat attcatccaa      5280
     attcagagcc tgattcacat tcgatcattg tactgatgct ctttcctatt ggtgcgtcat      5340
     cataatgtcc aatccatccc aatccgtgag acactgataa tcctgagaat cagcttcaag      5400
     tttgattccg tgcgagctag ctagaatttg atcctgtttt gccgccgtcg attctaataa      5460
     gaagtccttc ctcgtcttcg ctgccaagat gcagtgcgta agggaattca agaggaagaa      5520
     gattgctgtg aagggacact tttagttttt ctgttgcgtc aacaaaaaat aggggaaaca      5580
     tcttacctta tttacatgtt gctttctgtg aatattattg atgatgaata cgtgtaaaac      5640
     tgatgataaa gctatagaaa acataatgca catcataaat gcattaatga aaatcggagc      5700
     aaattgaaaa tttttggttt gttttgatct accaaagata aacgtcactt ttcaacccaa      5760
     tggaaataaa aagcctgcaa ggattatcta acccaatgta aaatcgatgg tgagagaaaa      5820
     tagtattgga agcagtatac atacacggag aaatcacaca acccaaaata attctgaaag      5880
     ttctggaaat ttgggtaaac agcatttatg ttttacccgc aattgggttg ctttgtctct      5940
     ctcacaacag ccattgttgt aaaaaaaaag taaagtaaaa aaaaaaaaaa atatgcattt      6000
     actcatcgat gttgtcaaac gaaaactacc tagaccagtt gagtgtaata tgggtcattc      6060
     cacagaagag ccgaattgag tgggaagtag tcaaatatgt attgatttgt ggctccgggt      6120
     acattttttt taacatttaa acatcgtttt tttttctaat ggaggagaag gagga           6175
//
ID   Gypsy-395_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   17-JAN-2019 (Rel. 25.01, Created)
DT   17-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-395_;
KW   Gypsy-395_AA-I; Gypsy-395_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 148-148 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 243 BP; 62 A; 67 C; 63 G; 51 T; 0 other;
     tgtgggacat gagttgccag actgaacagt tacgatccac aaacacaccc gaacgctaat        60
     cggatcccga tgtgtcgtgg ccgacggggt cgtgaacatg acagaacaat gatcggcctc       120
     tttcgtatac agaccgtcgc cgcgtacaga cgcattggta agttcttcct ctcagcgact       180
     gaacgatgcc ggccagccat ttcggctgat caccaccggt aaagtgaatg gcggaacttt       240
     aca                                                                     243
//
ID   Gypsy-396_AA-I repbase;    DNA;    INV; 6012 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-396_;
KW   Gypsy-396_AA-I; Gypsy-396_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6012
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6012
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6012 BP; 1862 A; 1217 C; 1422 G; 1511 T; 0 other;
     ttggcgcagg agaagctccc gaatcgtaag tatataagag aattggttcg tcttacaaaa        60
     atgaatttgt aagaaattga atggaattat gaatccttct tacgacagat caagaacaaa       120
     gaataagatt tgctgagttt taagtgtacc aagctagtgc atatatggtt agaaataacg       180
     tgcgacaggt cacgtaaact aaaaacgatt tcttgcttgc gacaggtcaa gcatttaaga       240
     tccgataagc ttgcgacagg tcaagctatt cacgtaaatg aaaaacgatt tcttgcttgc       300
     gacaggtcag gcatttaaga tccgataagc ttgcgacagg tcaagctatt acatgtgttt       360
     aaatgaaatc gaaaattgat tcggtgcttg cgacaggtca agcgtttccg ataagcttgc       420
     gacaggtcaa gcgttatata ttcaatgagc ttgcgacagg tcaagctatt gcatgcgtat       480
     aaattaacac ttcagtcgtt gcgctgttgt attttgtgca acacagttgg aaaaagctcg       540
     cttttcgttc acaacagcgg cgcggtggtt ccgactgttg caaatcgcgc gacgactgga       600
     aggttaaatt gaaaattatg atcgatgtgc ggcatgtcaa gtacgtgttc agcacaaaag       660
     cgattctttg cttatgatag ggcaagcata gaagtgacat gttaaaagct agtgacaagt       720
     caagcgataa aatttatgga aaatttaaat atttaggtcg caaaagttac attttattgg       780
     caaactaatc agagaaaaag aaatgatgaa aacaaacaaa tgaaataaca atcaaaacat       840
     aatctggcct aaatgttcag agctgtatat aaattgaccg ttaagagtgt ttttattgca       900
     tttcttccag gaatgctgat atggtcaaat ctgggaccaa gatgtccaaa aaggatcgga       960
     aattagagtt tttgtcgaaa caacttgagg cggagaaatt ggagaaggca gagatggcag      1020
     tgcaactcaa gaaactgcaa gcagaaattg aagcgatgaa atctgttcaa gtggctgtac      1080
     ccactgctga gagagaagtt tccgaccagg ccagcgatga tttcgaagca gcaccaagag      1140
     catcgagcac tcatcatgta agatcgactg gaaacttcga ggagtctcgc ttcttatcct      1200
     cggtgaacca gctgtcaata tcttcaataa cagttcctga gtgcaagccg tccgaagatg      1260
     acgaaataca ccggcacaca ttcgagatgt ggagggacct cctcatcgat tgtatgacat      1320
     tagctgggat tgaagacgaa ttcacgaagt tcactgtctt taaagtgaaa gccggacctc      1380
     gtttgttgac aattttcaga aatactaagt ccgacatcga ggctcctgat gctacatcca      1440
     atccgttttc gaatgccctt caccgtctca aaatgtactt tggctccggg tccgacgtca      1500
     tgttccagag gcgtaagctt gcattgttgg aacaaaaacc ggaggaatcg gatctcgcat      1560
     ttgttaccag agtgggcgaa acggcgcaac tttgtgattt cgaaaaagcc aaagaattcg      1620
     aagaaattgc caaagcagtc gcggagcatg ccaggtgcaa agaagttagg gttatggcac      1680
     ttaaaatggt taaccggaat ggaaccttca ccgagctagt ggacaaggtc cgcgaaatcc      1740
     aggcgattcg tatgaatgag gagtacttcg cagtaaaaca cggacaaggt caatcaactt      1800
     cgaaatcagc catgctagct ccggtgagag ctgatcaccc taagcagtgg ataccgcgaa      1860
     ggaactttcc acaaagatcg agcaaccgat accttccata ttcacgaggc aatacgcgtt      1920
     ccaatcaacg attcggcagg caacccgggt ggcaatcaaa tagttatgat gcacccagaa      1980
     gtaacgcaga aggacgaaat gataatcgtc ggtctgatag atgttggagg tgctacagct      2040
     atttccaccc gccatcagaa tgtggggctg cacatctagt ttgccggaaa tgtggtcagc      2100
     tggggcacat ccaaagagcc tgtcaaccat cagtacaagg gaacatgaag cgtgtcgcaa      2160
     ccaaggagat ttccgaaatc aacacgaaat atccgaagag tgattccaac gatgacgagc      2220
     cagtttccaa acaggaaaat gtgagtgatc aaattgaaag ttaatttttt ccaaaaattc      2280
     attctgaaat gccttggcgc cttggattgt aaccttttct ttgttttttt ttatcttcaa      2340
     ttaactattc aaaacttaaa aaggttatgt atgttacaat tgaatggatt tctgataact      2400
     gaactgattt ctaatatgaa agacgtgagg gaccaacaag aatgttggcc ctgacagaca      2460
     agaaaggcca attaattaat ttaagttaca tatttgcggt ttgttttacg attgaaaggc      2520
     aaattacatt tgaataattc tctgagttga aatcaaaaac attattacta gcgaaatata      2580
     tattcaaagg ctcagcgagt caacttcttt atgattaaat aaagcagaaa ataacaagat      2640
     ccaaatttat gttcataggt aaatttatcc gaaagacaca atgctattgg agacgaacga      2700
     tatgtaatag ctacaatcgg ggcgtacacg aaagaatgta ttatatccgc cacggtcgcc      2760
     ggcgtccgat gtgacttcct cgttgactca ggcgcagagg tgaacactct tattgagaaa      2820
     ttctacagca gtttgaaaaa tgatgccagg tacaacagca aacattacta taaaatatca      2880
     gttctaaata tgtgttaaaa cattaccgat aggtacagca gtggattgta caatatacga      2940
     gaaggatcag atgttcctct taaagcgtac gcttcgaaag gtgagcttga agttctcgct      3000
     tcgtttgaag cattcctgtt catctccaag gatcgaccgg tgcaccttga aaaattttac      3060
     gtagttaagg atgctaaccg ctctctacta ggccggtcga cggcaatgag atacagcgtg      3120
     cttatggttg gaatcagcgt accaattttg aaacgcgcag ctcaggaagg tatcatagcg      3180
     tccatcgaag ttagcaatcc gtttccgaag ttcaacgtcc cgccggtaag aatcagttac      3240
     gataagtcta gggcaccgtg cagaaatata ttctcaaata taccagaagc aatcaaacct      3300
     ctggtagaga aaaggcttca ggaactagtc agaacagata taatcgaacc agttcgcgac      3360
     ggaatggaca tgtcgttttg ctcttcgatg ttggcggttc cgaagggtaa acatgatatc      3420
     cgtcttgtca ttgacctcag aggacccaat caatatattg agaggacgcc ctttgcaatg      3480
     cctacactgg aatctatttt ggcaaagtta aacggcgctg cttggttctc gacaatcgat      3540
     ttatccaatg catttttcca catcgaattg gaaaaggaat cccgacacat tacgaacttc      3600
     tacaccgagt ttggcgtatt caggtgtgtc cgtctacctt ttgggctgtg caacgcacca      3660
     gatgtctttc aagaggtgat gcagagaaca gttttgggag gatgctctgg ggtaattaac      3720
     tatctggacg atgtcctcat atttggtagc agcaaagaag agcacgacgc aaatctagcc      3780
     gctgtattaa gccgcctaga acaacataat gtgaaactaa atgatggcaa gtgcgtatat      3840
     ggtagccagt cggtcaaatt cgtgggattc acattgaccc caaaaggatg gagtgtaacc      3900
     gatgagaaaa tgagcgctat caagagtttc aggacgccga catcatgcag cgaagtcaag      3960
     agttttcttg gtctagtgac gttcgcagat cggtttatcc aaggaagagc tgacttgaca      4020
     caacacctcc gagctctcgc taattcggaa aaattttatt ggacggaaaa ggaagagatg      4080
     gagtttaagt accttcagga caacgctttg aaaactattc agattctggg ttattacagt      4140
     cccaccgata cgacagaatt gtatgttgat gcaagcccga taggattggg tgcagtcctg      4200
     gtgcaatatg atgcagacat ggttccacgc ataatatctt gtgcatcgaa agcactcaca      4260
     cccacggagc agcgttaccc ccaaacccag agagaagcgc tagctgtggt ttggggagtg      4320
     gaacgcttta catcctatct tctcgggcga tccttcataa tcaaaacgga tgcagaagcg      4380
     aatgagttca tatttagcac atcccatagg atcgggaaaa gggcggtgtc acgcgcggaa      4440
     tcatgggccc tgcgacttca gccatatgat ttcattgtgg agggagtaaa ggggaaggaa      4500
     aatcttgctg atatcttatc acgcttgatt cataaatccc aaaaagccga acccttcgaa      4560
     gaggatgatg atgggcattt tctgtactca ctagatgcag gatcgatgaa cattacctgg      4620
     gatgagatcg aaagagcttc agagggggac gaagtgctac agatggtggt agaagcatta      4680
     gaatctgatc gttggcccaa ggaactacgc aagtatgaat gccagaagaa gaatattcgt      4740
     gctttaggct ttttgttgtt cagaggagat aacactatct tacccagctc actccgcatg      4800
     aaagcattga aggccgcaca cgcaggtcac gtaggggaaa cctcaatgaa gaagatcatg      4860
     agagaattct tctggtggcc tggtatgtcc atcgatacgg aaaagtttgt gaaaaaatgc      4920
     gagacatgtg ctttgttgtc caggaaaaat ccaccgcttc cactatcgac aagggaattt      4980
     ccagatggtc catggcagat tctacaagtc gacttcctgt ccgttcctgg ctgcggttcc      5040
     ggtgaatttt tggtactagt ggacacctat tctcgattcc tttcagtgct cgaaatgaga      5100
     agtactgatg ccaagagcac gaacgaagca ttatgtgaaa tctttaaaat gtggggttgt      5160
     cccctgattc tccagagtga caacggtccc ccattccaaa gtaatgcgtt catccaatac      5220
     tgggaaaaca agggagtgaa aattcgcaag tcgataccgt tatctcctca atcgaatggg      5280
     gccgttgagc gacagaatca ggggataatc aaagcgatgt ctgcttctaa gctagaaggc      5340
     acaaactggc gacactcttt gcagcactac gtgcacaacc ataataactt gattcctcat      5400
     tcacggctcg gagtcactcc gtttgaactt ttggcaggtt ggaagtttag aggaaccttt      5460
     gtcagcttat ggaaatcaaa gcaactggat catgaggatt tgcaagagaa agattcggag      5520
     gccaagctta tcagcaaaca gcacacggac gctgctcgtg gtgcgaagga atcagttatc      5580
     aagccaggtg ataccgttct tgtggcccaa gcacgaaggt tgaaaacgga tccaacattt      5640
     tcaggagagc gcttcaaggt cctagccaga gaaggagcca aagttgtagt acttagtcgt      5700
     agcggggtgc aatacactcg aaacgtgcaa gatgtgaagt tagcaccacc agaatccatt      5760
     gaacagtcag ccgcaggaga aagatcgagt actatatcgg gaaaggcaac aagtatttct      5820
     tctaacactg aagatgaaat tacacaatcg gactcaacaa tcggagttga tgcgcaatca      5880
     gaattggtac ctccgagcca gaacgttcca ccagaaaggc attttcgaga tcgctccaaa      5940
     gtgaagaaac cggcgagatt cgacgataag tttgtctact tcgtttatga ttagagtgga      6000
     gatagaggcg aa                                                          6012
//
ID   Gypsy-396_AA-LTR repbase;    DNA;    INV; 651 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-396_;
KW   Gypsy-396_AA-I; Gypsy-396_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-651
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-651
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 149-149 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 651 BP; 205 A; 84 C; 162 G; 200 T; 0 other;
     tgtggtagag taatcctgca gcgagataac gattaataaa cattaaattc aaatgatact        60
     taccatttat ttgcttctgt tgtctttcac tgtttgataa caatacgttt cggaagaaat       120
     cttcggttga cgtttctttt agtaaacaga gcatgatctg acatactgtg atggaaggct       180
     tattcgaatg atgtaaaatg gtattggtga attcgatttg ggttaaaaag aaaaggtatg       240
     ctcattgcta taaatgtgaa gcgtttgcaa aaacggttcg ataaataatt atccgagagt       300
     gagacccgac taaaatagaa aataaaaagg aattcttaga tgtgtgtatt ggagtacgca       360
     gatacgttag gagtggtgag atgccttttg aagggatgtg agtgagtaga gtattaaagg       420
     aagtacgtgt tcaggagtgt gggtgatttt agaggatgaa catttccacg gacaagatgg       480
     tgttggtgag ctggtagggt cagtaattta atgatgtggc gagcgaagat ttctttcaac       540
     gaactttgtg acgcgcggac gtgttacaat ttttgtcaag tttttcgtat ttcaaaatgg       600
     cggatcagcc aaagcaagtg attcgtcagc agaaaattaa aattcaccac a                651
//
ID   Gypsy-397_AA-I repbase;    DNA;    INV; 6649 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-397_;
KW   Gypsy-397_AA-I; Gypsy-397_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6649
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6649
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 123-123 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6649 BP; 2670 A; 1092 C; 983 G; 1902 T; 2 other;
     ggcgcccgaa tagggaccag cgcgagtgta ggttaattgt gtcgtgagtg ttaaaatatc        60
     gcgagcatta tccgaaaatt tcaactttac cgcagcacaa gtggcgaccg ctactacagc       120
     agcagacgtg aagaaagcgc ccctagtcac caccatatag gaaaaacggg atcagcgcat       180
     cttcgctggg acagttgagg ctcgtgtctg gtcttaaaac aacaggagtt ccgacgttag       240
     aggacggata cccgaactaa agagtttcga cgtaacagga cggaaccgac ggacaactga       300
     agtactcgcc gttacaggaa tagagtattc agagtatgat aagaatacta ttgtaagtat       360
     aattaacaaa ttattatttt tttcagagta gaaagaaaaa ttaagtgcat aagtgtatta       420
     agtgtttgta agtgtagttt ataattgtgt aactaaataa aaaagttctc aaataattcc       480
     aatcaattaa ataaaaaaaa atctggatca aataatagaa caattcggct cattaaatct       540
     aaatatgcct aacgatattc agaatatact cgatcgctta gaatttttgg aaaaacaaaa       600
     tgtggtgcca acggaattgg attataatga tccaattctt tattatttaa acccggatgg       660
     ttcaccagct gatccatctt caatagaaaa gattccggat ttaataaaca ccatacctaa       720
     ttttgaaggt tcatcaaacg agttaagcag ctggattcga gatgtggatg ctctagtcaa       780
     agcttatcaa gttaatccct caagttctgt gcagcaaaaa aataaattct acgcaatctg       840
     cacaactata cgtagaaaaa ttaggggaga agcaaatacg gctctcgtaa attcagatgt       900
     gaatataaat tggaatctca taaaaaaaac attgttaaca tattatggtg agaaacgaga       960
     tctcacgact ttggactacc aactgatgaa tatcacgcaa tcaggaagac aattgaaaat      1020
     ttattacgac gaaataaata aattactttc tctaattgca ggacaaatta aaactaatca      1080
     aaattaccag catccagaag cttcaaaagc tatgataagt atgtataaca aaaaggcaat      1140
     tgatgcgttc attaggggtt tagatggtga tattggtaag tttctcaaaa attatgaacc      1200
     tgaatcttta gctaatgcat atgcgtattg cataacttat caaaacatcg agtttcgaaa      1260
     aataatgaca aaaacaagaa accatgaaat gccttcaacg tcaaaaggtt tttcatctac      1320
     aaaattgcca cctttaattc cacctaaagt accatttagg ataccgaata gcaataatat      1380
     gcaaaataat ccatttcaac acagacaaat gccaaattat cagtttcaaa ataggcaacc      1440
     tatgatacca cacatgccaa aacctacacc acacttccaa ttcacaagac cacaatttcc      1500
     tccacatatg attttcccac ctagaacaca atcagttcct caattcacaa ctcagctaaa      1560
     acaacaacca ataaatcaac ccaatacttt ccaaccaaag ccagttccaa tggaagtgga      1620
     cccctcaatt agaagtaata tggtaaatta tgctaaccga cctcgtaatt tccatattga      1680
     atctgatgat tctgaaagtt attttcaaga actaccatat ttagtaaata atgaagatcc      1740
     agaaatgact tcttttgaaa aatattgtaa aaattttgaa tatcaacaac caattgatga      1800
     tcaatccaat gaagagcttg tagaagattg tgaattgaat tttttagaat aaaatcatca      1860
     ttaccatatt ttctacatta tggtaatgga aaactggaaa acccattgca aattttagtt      1920
     gacactggat cgaataaaaa ttttattcat cctaaatata ctaaaatatc ccatgcggtt      1980
     gaaaatcctt tttatgtttc atcaatagga ggagacataa aaattgagaa attttctcaa      2040
     ggtaaaattt ttgcaccata ctcaaatgtt aacgtgaaac tttttcatat gcctaaacta      2100
     aaatcattcg atgcaataat aggtcatgac acgcttaagg aaataaaagc tgttattgat      2160
     acatcaaacg aaaaattaat aattgattca aaatttgaaa ttcctctatt acaacgtaag      2220
     ctacaaatga tcaatcaaat aaatattcgg gatgaccatc ttcaaaaatt tgagaaagaa      2280
     aaaattcatg aattattaca acaatataaa gacctttttt tacctccgga tgagaaattg      2340
     acatttacaa ccaagataaa agccgatatt agaaccgttg atgaaaaccc tgtgtattca      2400
     aaatcttatc catatcctca agcttttaaa agcgaagttt gtaaccaaat tgaaaaaatg      2460
     ttacatgatg gaataataag accatccagg tctccatata attctcccgt atggatagtt      2520
     cccaaaaagc tagatgcctc tggcaagaaa aagtttagac ttgttattga ttatcgcaaa      2580
     ttaaataaaa aaacgataag tgatagatac ccgattcccg atacgtctac tattttggct      2640
     aatttaggta aaatgaaata cttcacaacc cttgacttag catctggttt tcaccagatc      2700
     cctttgaatg ataacgatat tgaaaaaact gctttttccg tcaataatgg aaagtatgaa      2760
     ttcgttcggc taccttttgg attgaaaaat gcccctgcca tttttcagcg tgtaatggat      2820
     gatgttttac acgaatatat tggaaaaata tgttatgtct atattgatga cataattata      2880
     tttggagaaa ctttagaaga acaactgaaa aatttaaaaa taattcttga aacacttcgt      2940
     aaagcaaatt ttaaaataca atcagacaaa tctgaatggt tgaaaacaga agttgaattc      3000
     cttggattta ttgtatccaa aaatgggttg aaaccaaatc ctaaaaaaat tgagagtatt      3060
     caaaattatc cagaaccacg aaacttaaaa gaattaagag catttcttgg attatccgga      3120
     tattacagga gatttgtaaa aaattatgct aaaattgcta agccactcac tagatatcta      3180
     aaaggagaaa atggacatcg acaaatttca aaaaatgaat ctaaaaattt taatataaca      3240
     ttggataatg aaggaaagaa agcttttaaa ttactgaaag aaatcttgtc atcagaagat      3300
     gttttagcat ttcctgattt taataaacct tttttactta caactgatgc atcaaataaa      3360
     gcaataggtg ctgtgttgtc tcaaaacttt catgatggag aaagaccaat tactttcatt      3420
     tctaaaactt tatcaagcac agaagaaaat tatgcaacta atgaaaaaga gatgcttgca      3480
     atagtttggg cattgcatac tcttagaaat tttatttatg gtcataaagt tgtaatttat      3540
     acagaccacc aacctttaac tttcacaata tctccaaaga ataataatgc aaagcttaag      3600
     agatggaagg cttttattga agagcacgac catgagattt tctataaacc aggcaaagct      3660
     aatgtagtag ctgatgcctt atcacgtatt caaataaatt ctctaactgc gacccaacac      3720
     tcagcagatg atgacgacag ctcctttatt ccatctacag aagctccaat aaatgttttc      3780
     aaaaatcaat tatttttcaa aattggaacc aaatcaagat acggtttagt tgtaccattc      3840
     gataattaca aaagacatat tttcattgaa cctagattct caagagattt tttgaaacaa      3900
     caacttaaga aatatttaaa tccaaatgtt ataaatggta tttatacaga tgaacctatt      3960
     atgggtgaaa ttcaagaaat ttttaaagaa acgtttaatc ctagattgat gaaagtcaga      4020
     tattctcaaa tcaaagttca agatttaaat aaccaggaaa accaattaga agaaatwaaa      4080
     aagattcatc aattcgctca tagaaatgca aaagagaatg cagaacaact tttgaaacat      4140
     tattactttc ctaaaatgac aaaaatggtt gaacaatttg taaacacgtg tgatatatgt      4200
     aaaacagaaa aatatcaaag aaatccacag aaatttatac cattcaaaac accaattcca      4260
     acttatccat ctcaaataat tcacatagat attttcacat atgatcaaga taatttgttt      4320
     ttgacttcaa tagataaatt ttcaaaatat ttgaaatata aagcaattga aagtaaatca      4380
     cttcttgata tagaagatgc cttattagat ttgatacacg aatggaacat accaaaaaca      4440
     attattatgg acaatgaaag ttctttcaac tcaaatatta ttgaacagcg gttaagagat      4500
     ttgaatattg aaatttataa aactcctata aacagatcag agacgaatgg acaaattgaa      4560
     cgttgtcatt cgactttaag ggaaatagca agatgtctta aaaaagagac acctcaaata      4620
     gatataccac aattgattcg ttcatcagtt tacaaatata ataacactat acacagtttt      4680
     gtaaaaaaca cgccacacaa tatttatatc ggtgaaacga accaaaattt ggatgaacag      4740
     gaaatagcca gaagaaaaac taaaagtcac gagaaaattt tgaatttata taacgaaaaa      4800
     aatgagaaaa tattagataa acaatatcca aattttcaac caggatctta tgtatttgaa      4860
     aaagcgaaag aaatttctaa aagaaaaagt aggtataaaa aggttcaagt taaagaagat      4920
     ttcgacacat atattattga ttcaaataac cgtaaaattc ataaaatgaa tatcagaaaa      4980
     aaataacaca ttaattttta ttcttttatt tttagaacaa ttcttgttta cacgatgtac      5040
     agccatgtgg aatcaactat cagaatacac gacttgaata aaaatccttt agccatcata      5100
     cccataggaa aagccaaact tcaattagga catgtaagaa taatccaacc agttaatttc      5160
     acatactttg aagacataat tgaaaatttt gatgagatgt taagaactaa taaactaagt      5220
     ggaaaattgt atcaagtatt gaagaaaaaa catgcacatt tgtataacac ttattataaa      5280
     ctaaaaccta atgttcatcg aagaaaacgt tgggatagtc taggcactgc atggaaatgg      5340
     atagcaggaa atccagatgc tgaagatcta aggattatca accaaacgat gaataatttg      5400
     atcgaatata acaatcaaca agtttttgtc aacaatgcta tggatacaag gattcaacaa      5460
     atcagcaaaa ttacaaacga ccttcttgaa ctggatttca aaacaaaatt acaacatgaa      5520
     gtggaaatga atatacttat tgcgatactc aatatagatg ctgtacaaaa tcaactagaa      5580
     gttttggaag atgcgatatt actagcgaaa catggtattc caagcagcag aattttgtca      5640
     atgacagaat atgccaaaat aaaaccattt ttagagcagc aaaatgttca tgttacaaca      5700
     tttgaaaaac tcttatcgaa atcatcagcc caagttacaa tgaataatac acatgtaatt      5760
     tatatgctaa aaatacctca attatcatca gaaacatatg aatatgaatt catagactct      5820
     ttggtacaaa atcaaaaaag ggtacatctt tattcaaatt acattctcta caattcaaca      5880
     aaaatatatg aaatcagcaa tgaatgtaca caagatgaaa ctctctatat ttgtgatacc      5940
     aaaatcctaa aaactccaag tcaatgcatc cgcaatctca tcaggataca acacgccaac      6000
     tgtacatatg aaaaagtgta tacaactgga aacatcaaac acatagatga agcaactctt      6060
     ttactcaatg atgtaaatgt tagtttacac tcaaattgta ctaacaatac wcagaggtta      6120
     aaaggatctt atataattca attcgaacat tgtgaattat atttggataa taatatatac      6180
     cgcaactcta tcatcaacct caacagcaaa acctttagac caacaacagg attattggta      6240
     gaagaagatt caataatcga tattccatca ccggaatttt tggcaaattt aacgctaaac      6300
     catagaggta ttttggaaca cgtgtatcta caaaatgagt cactaaaatg gaaacagcat      6360
     atttttgaaa taatgggtag ttctggaata cttattataa tcataatgct agtaattgga      6420
     ataattatca agtattggaa accaaaacaa acaaatatca atatcaaaat aagtgaacaa      6480
     ccaactgcaa cagctcccat atcagaagaa attcgaaaac ctgaaaatga gtcatcaagt      6540
     tatacagaca tttctacaga acgtttcttg gaaattcaga aatttttaaa catgccgaca      6600
     caagaacgct caataagact ttgaggacaa agtcttttga aggcggagg                  6649
//
ID   Gypsy-397_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-397_;
KW   Gypsy-397_AA-I; Gypsy-397_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-268
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-268
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 150-150 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 268 BP; 91 A; 58 C; 42 G; 76 T; 1 other;
     agttagcacc accctagtaa cacaccagtt aagcaccagc acattcacag accggcgcgg        60
     catcgamgat cccagaaccg acagccagtc aaaacatcgt ttggaattta tcaaaacata       120
     aacataaatt aatatctaat aaaagagcat gcggctcgat agcgacagct tgttcagttc       180
     gttcagttca attagctagt tcagtcttaa gttagtcatc cgaaatcatt tttttaaaaa       240
     ttaagtttta gttcttaatt tattaact                                          268
//
ID   Gypsy-398_AA-I repbase;    DNA;    INV; 8117 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-398_;
KW   Gypsy-398_AA-I; Gypsy-398_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8117
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8117
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 124-124 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 8117 BP; 2566 A; 1500 C; 1703 G; 2348 T; 0 other;
     tttggcgccc aactgcaggt ttctaattac gtactatttg ttgttgaagt tcattttttg        60
     ttccatattc tatttatttc attgcaagtt tctgttcgtt actagtttat aatatcaaag       120
     taaaaccgct gtttgtattc atatacagat ttgtagctgt tcagttgttt gtgtgatttt       180
     gagaacattt ttttcaattt acttgaagta cattaaaaat ggctgccaaa tttccgcgag       240
     cagaccattt aacaaatgaa gaagtagatt atgaattgat cattcgaggg aaaagagaag       300
     agacaaagga ggaattaggt gtaaaacatc gactactaag aaatttaatt tttgaagatg       360
     tgcgagaaaa taaaacatac acttctcgtt acacgatgga ccaggaatat gactatattg       420
     caagtaaact tgatattttg ggtaaaaggt tacaaaaagg ccaagacgat aaaagtatct       480
     caagattgaa acattattta atgagagttg aacggtgtgt tgcggatgat ccacgatcaa       540
     tacagttaaa ggaagagcta agccaagaaa tcaattccat tttgagcaga tttgcacata       600
     aggactcttc taacaaagaa acatcaaatt gggaacaact gactggagct gtagggggaa       660
     ttgaatcaca agatcaggaa aacatgtcag aaaggtcaga gaagagcgat ttacacaatt       720
     ctcctaacaa acaagtagat tcaccagtaa acgaaaacac aaataattct ttaggagcta       780
     ttccaaaaac caataactcc caattacaaa acccatccat ggaagaaaat gaggctctgc       840
     gacggcaaat tcagatgttg gaaaaacagt tagcagaatt acgtgccaaa gcacagaaca       900
     ctcttggtaa tttgccagac caaggtgaaa atcctaacgc agtccagttt gacaaaacct       960
     ctcagcagag agaaatgttt catgagcaac cttgctcagg gaatattgct gggttagaaa      1020
     gtttcaatag gattccggaa acgaggagaa acgatatgca aaactggggt aatgtaaata      1080
     gaatggacag gacacgaaga aacagttata atacagtaaa ctcagaagag aactatagaa      1140
     ggcagaacca catcagaaat agtcaggggt attacaggga aggtattaga aatcaattca      1200
     ggtatggtgc atatgaacag gaaaacatga ggtatcaagg agtaaatccg cacgaagcta      1260
     gagaaaacag tgaaattttc gttgagcctg gtctcagaca gagtcgagta caaaatagaa      1320
     ggaacgactt ccggaataat gcagcgtatt tatacgaaga agacgataat gacctaccgc      1380
     agtatcaagc tagacgttca gtaagtgaat ttgaaattat caatgctgat aggcggatgg      1440
     agaaatggca cctaacgttc aacggcgact ctcgtcaaag atcgttagag gactttctcc      1500
     ataaagttcg taggcttgct agaatggatc gtattgaggg agatgtacta ctccagcgaa      1560
     tccatacaat tttaagagga gaagcgtacg attggtacct ttgctattcc gatgagttca      1620
     tgagctggaa tgactttgaa gaacgaataa ggtatatgta cggtaatcct aataaagatc      1680
     aaggcaaccg tcaaagaata tacgaacgga aacagcaacg caatgaaacg ttcctgtcgt      1740
     tcaaaatgga gatcgagcgg ttaaacaaac tccttccact ccacttgacc aggacaggtt      1800
     gtttgaggtc atttgggaca acatgcgccc acattataga tccaaattag cttgcatcaa      1860
     tgttagagat cttcagatgc tcgaatatta tgcctataga atagacgcca gtgattcctc      1920
     gttccgtcaa cgagaaattc cgtctagaac gaccaatgct gttcataaca tagaggcgac      1980
     cactgactca gagaaatcct actcgtctgg ctcagaagcg gaggaagtta acgaagttgg      2040
     cagaaaatat gataaatcca aaagagttcc tagcagaaat gttccaaatc agcagtctag      2100
     agttactcga gagacagctg aggaccagaa cattcctctt tgttggaatt gcaacaaaac      2160
     tggtcatttg tggcggtact gcaaagagcc gagaaggatt ttctgttact catgtggaaa      2220
     cccaggcaaa acgacggtat cgtgtccaaa tcacgtacga gatgctcagc aatcagctca      2280
     aagatcggga aactagattt ggagtgtaac acagggagcc agtccactcc aaatgatgat      2340
     aaggttccca gcgttaaacc ctttcaagac ccttttcttc aaatttgcga aatcaaaata      2400
     cataccggaa gctgtcctca tgttagcgtc cagattttcg acaaagtcta tgatgcactg      2460
     cttgattctg gagcaagcgt cagtgttact aatgtcgtag acattgcacg aaaccacggt      2520
     ttaaaaatgc atagaagtcc atttcgaatc gttactgcag acaaaacggc tcatgagtgt      2580
     ttagggtatg ttaatctacc cattgctttt cgaggagtga ccaagattgt accaactgta      2640
     gttgtgcctc agatcgcccg aaagttgatt ctcggatgta acttttggga tgtctttggt      2700
     ataaaaccaa tgattgaaaa cgaaaatgga tttgaacaaa ttgcatccat ttcagtcgaa      2760
     aataaatcag ctgaaacgat tgagctctct ttgtgtcccg ttgaaacctt gccgatcatc      2820
     aagaagtttg agcctgatga aactctggat attccggctt tggagttacc agaagcttct      2880
     aagacaacac cagagactat tgaaactgaa catatacttt ctgaggctga acgaaaggaa      2940
     ctaacaaagg ctgttgaagc attcccatgc acttctgaac atcgactcgg tagaacaacg      3000
     ttaatacaac atgaaatcat tctcaaagag ggggctaaac caaggcgaca accgttgtac      3060
     aggtgctcac caacggttca ggccgaaatg gaagcagaac ttgaaaggta ccggagaatg      3120
     gacgctattg aagagtgtac cagcgaatgg gccagcgctc tagtgccagt tcggaaagcg      3180
     aatggtaaac tacgagtttg tctggattcc cgaggagtta acgcttggac aaaaaaggac      3240
     tcgtacccta tgcggaacat gggaggaatc ttccatcggc tagggagtgc gaggttcttc      3300
     tcagtggtgg acctaaagga cgcgtacttt cagattcctc taaaagagga atctagagac      3360
     tacacagctt ttaggacccc acaaggtcta ttccgattta aagtttgccc atttggttta      3420
     acaaacgcgc cctttacaat gtgccggttg atggaccgtg taatcgggtt tgatttggag      3480
     ccgaacgtgt tcgtctattt agacgatatt gtcatagcca caaccacgtt tgaagagcat      3540
     gttcgtctat taaagatagt tgctgaacgc ctcactgcag caaacttgac gatatcgctc      3600
     gataagagta gattctgtcg caaacaggtg tcttacctcg gttatctttt aacagaagaa      3660
     ggcgtatcga tcgataactc gagaatctca ccgatactcg attatgctcg accaaagaat      3720
     gtaaaagaca ttcgaagact cttaggcctt gcaggctttt accagcgttt catacgcaat      3780
     tatagcgcaa tcgtagcacc gatatcggat ctgcttaaga agacgcgtag caaatttgtg      3840
     tggacagagg cggctgagaa ggccttcggg gaccttaagt cagctttggt atctgcccct      3900
     atcttaagca accctgattt taattgtcca tttataatag agtcagatgc atcggacaac      3960
     gccgttggag ctgccttaat ccagcagcaa gatggccagc cgaaggtaat cgcctacttc      4020
     agcaaaaagc tcagtagtac gcagaagaag tacgctagcg ttgaaaagga atgcttaggc      4080
     gtccttctgg ctatcgagca ttttcgccat tatgttgaag gcactcgctt taaggtcgtt      4140
     accgacgcca gaagcctact gtggttattc accataggcg tagagtcagg caactcaaag      4200
     ttgttacggt gggcgttgaa aatccaatct cacgatatcg agttagaata tcgaaagggg      4260
     aagcaaaaca ttttggctga ttgtctctct cgatcagtcg aaacgctatg tacgctaacg      4320
     atagaccccg agtaccaaga acttctggat cgtattaggc aagacccaat aaaatatcca      4380
     gatttcagaa tcgtcgatga taagatcttt aagtttgtta aaatgtcagg aaaactggag      4440
     gatagcagat ttcaatggaa atcctatcca ccaaagtcaa aaagatcggc gataataaaa      4500
     tccattcacg accaagcaca cctaggagcg gagaaaacaa tcaatgcggt caaagaacga      4560
     tacttctggc cttcaatggg cgttgaaata aagaagtatt gccaaagttg tctgttatgc      4620
     caaacgagca aggccactaa caaaaatact actcctccaa tgacagaaca gaaaaaagtt      4680
     gtccaatatc catggcagtt cttggccatg gattatgttg gtccacttcc ggcatcaggc      4740
     cgtggtagaa acacatgcct tttagttgtg acagatcttt tcacgaaatt tgtcatagta      4800
     cagccctttc gacaggcaac agcagagtcc ttggcacaat ttgtcgaaaa ctctctgttc      4860
     ctgctattcg gagttccgga agtaatcctt tcagacaatg gaacgcagtt tacttcaaag      4920
     cagttccagt cattgctggc aaagtaccac gtaaatcatt ggcgcacacc aaactatcat      4980
     ccgcaaatca atgatacgga gagagtaaat cgcgtgatta ctactgccat tagagcttcg      5040
     atcaagaaag gtcatacaga gtggtccaat aatctccagc aaatcgccaa tgcagtcaga      5100
     aattctgtcc atgaagcgac acagtacact ccgtacttta ttttgttcgg tcgcaatatg      5160
     gtttccgatg ggcgtgaata cagaaaacta cgggacctag actctactaa cgaccaccag      5220
     ttaggggccg aagagaggga aaaactactt gaagatgtga ggaataacct taagaaggca      5280
     tatgagaagc acgcctctta ctataatcta cgctccaact caaattgccc aacatatgtc      5340
     gtaggagaga aagtccttaa gaaaaatatg gaacaatcag acaaagggca gaacttttgt      5400
     tcaaaattag caccaaaata tgtccaagca gtggtcaaaa gagtcgtagg aagccactgt      5460
     tacgatcttg aagatctcaa tgggaaaaga ttaggcatct tcaattgtaa attcttaaag      5520
     aaactagttc aacagggcta gtttctcaat tggtcaagct atgtagctct caattttgtt      5580
     gagtagtaac aattgcacca tgatgctttg gctctggttg cagcgaacac gctatgccac      5640
     cgtttgtgaa gtttagcatc agacctagtc tgatgccgcc cccacaaaaa caatatctac      5700
     tgggggaatc cttggtgcaa ggacatctgt tcgagcccaa gaagaaactt cacagatgag      5760
     ttggtcaatg ttatctttcg accgccttag gatagcaaat tctctttaca attaggttgg      5820
     ttctgtgaat gcctatcccc tcgacaggaa gacagagcga gtcctcgatg gtttcatcag      5880
     gacgatgagc ttcattaaca gaaactctga gctaagatag cgttgatgag gagtacctca      5940
     aagggaaaaa gaagcgtgag tttgagatcg gggatgctca gacgctgatc gcatcaaaga      6000
     ctcaaatgtc atccaggaat ggatcgacga gaaagagcaa attaagtcaa tcgagctatc      6060
     agaacaacca aagttgcaaa tagaatttaa aatactaagg aactagtttt aaaactgaat      6120
     tttcccattc tagtcttcta gatcgtagat ctgactgaac gtgacgtttc atgaattgta      6180
     tatacaaatg tgaccaatga agggtatttc tttcgttcga tgaatgttag caagtagtgc      6240
     acatcgagtc ttatggctat tttagtactt aaggctagat gatttattgc gctctttgta      6300
     aatatgttgt agagtatata gatgtgttta tttatttatt ttgtgttatt tattagatgt      6360
     ttgtttttat ttatttgcta attgtatata taaattatta gatgctttat ttacaatctg      6420
     ttagatgcat tatttatagc tttaagagat gcattattta tttatatatt tattagatga      6480
     tttatttatt tattatatca tttatttatt attggatgct ttatttattt atttattaga      6540
     tgctttattt agttagatag taatttatta ctttttttca cgatgaatcg tcgttgaaag      6600
     ctctgtccgt gacgtcataa tcattttggt gctttctaag cggctacgca tcgctagaac      6660
     catttttctc tctagttgct cgtctgattg tacctaaaaa caaaatatag aaatagtgca      6720
     tgctcaaaaa ggaaatataa tatggaatga tacttagctt gtagccttga tgtggtcatc      6780
     ccgcaatcca ccgtagacca tcggaatccg tggaatttca ctccattctt caattcgagg      6840
     ccgttttgtt gttatgcatc gtccatagga gttccgttgt agtccttggc accgttccgt      6900
     atggtttcct acaggaatca cagtaaaaac attgaaaaca taccttttat aataagaatg      6960
     atgcaatagt tacttcttcg atagtttttc caattaaata cgtagaattt cacactatta      7020
     gattataaaa tgttccactt ccacaaactg taaacaaact tctgtaacag ctcacatatt      7080
     tgacgtttct gaagttcatt tggagtcatc gatgaatatg ttcagagttc atgagatgta      7140
     gtgatgttgc tcatttctta tgtttcggtg agccgagctc cttgcttggc gtgagaaaca      7200
     tggaagaagt ggggtttcga gtaatgattc aacataattc ttatgttgag tcaagttatg      7260
     ctatgaaagc gctctcttcc tagccaacac gttggtattg aagacgatgc gtgatcatgc      7320
     agttagtttt aagttttgcg tttgtacctt agaaagacat tgtttcaggg aatagccttg      7380
     aggttcgatc taaggacaga cagtgaggtg aattcagaat gaggtattgt atccatcgtc      7440
     aggaatggaa tagcttcatt actgaatgag ccggttaatt atgtttcgtt gagtggttgt      7500
     gtatggaagt tgatatgaat caattttcat gtgtttttga tgtcgatgtc gttctgttaa      7560
     ctgaacttag gaattgataa ctccaatgaa ccaaagatcc gtactatagt atacaggttg      7620
     agaccacatt attgtaaata atttgtacat agtcacagtt agatttttaa actttgttta      7680
     tttatttaat tattctgtcc acttgttatt gttgcatgat ggattgatag atttatttat      7740
     acatttattt atttagatat ccatatttat ttacagaaaa tatttgtttt atttattata      7800
     catttttcca tatttataga ttatttattt attcattcat ttatttattt atttatttat      7860
     ttatttattt atttatttat ttattattta gttatttatt tatttactta tttactcatc      7920
     tatatggcat attattcaaa ccattgaata tactaaaaga tctcgatgtt tatggaaaat      7980
     tatgtacgtt tcgttagatg tttatttaca atacgtgaga gtctcgattt gacgaatctg      8040
     ttatgagtaa ggcttgccct tacgaaaatt tggttgtact cctacaacca aattttcgta      8100
     aaacaagtcc ggtgtta                                                     8117
//
ID   Gypsy-398_AA-LTR repbase;    DNA;    INV; 1815 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-398_;
KW   Gypsy-398_AA-I; Gypsy-398_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1815
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1815
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 151-151 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1815 BP; 476 A; 367 C; 464 G; 508 T; 0 other;
     tgtagcggta tttgctagag tcattaatta attatatttt gtcacgatag aagtatagta        60
     aaacgaacag caatataaat tcatttacgt ttcaaacgaa cagcagtata gttcacttgc       120
     actgaacttg catgcaatgg tgaaccccaa tcactcgcaa ataaactctt cagcgagctt       180
     cactcgtaca agttatcgtt cactcacttg gcgcgaacat aactcatctc acgaagcatg       240
     cgccgggggc cgttgggatt gagtatgctc tcccgtcggg accacttgtc gttagattta       300
     aagaataaga cgttgaggaa aagaatggac ccgagctagc taaatgcgaa atgtttgaga       360
     gggaaaagga caatattcac tggtcggctc aagggataat cgggaaccga cttttgataa       420
     gatcgttcca cgatttccgg tacgaatgcc gaaaacataa actgcgacct ttctgaggca       480
     tctcaagttc tgtctcgtcc actttgatct gacccgtgga agaggcagga gtgtgaagta       540
     ttcttttaag tagtttcgcg gtgtgttttg tgaaggtaat taaaaacgtg gaaagtgtct       600
     gaatgttcag tgtaataatt gctaggtttt tccctcccga taggtagtgt tagagcaata       660
     aatttgctag cttgtgcggt gctgtgcgtg attgaaaata aaaaaaaggt aaaatttctt       720
     aaacgctttc cgaacaaaag cttaccccgt cgaatagccg ttcgacggct ttttattcaa       780
     cagtttagtt tcccgcacca tcccacctcc cgctcggcac accgcgccca atttcgtcca       840
     ccagtttcca cacttctgac cccacgtgcc agcttcgaag gtcttcctaa ctgccggccg       900
     gagttagaag ggagttgcgc cgtcaccatc gcactccgga agagcgattt cccccccccc       960
     aactagggaa attcaccgta tcgacgacaa caacggtaca gcgctattca ttccgtgcgc      1020
     ttttgttcat ccgtgggcaa gcgtcgtaga ggcgacgcga aggaggaagc agccggtaaa      1080
     gcagaagccg actgtaagta gaaaggctat ttttgtacat gtactcgagt tggtgaagcg      1140
     tttggaagct ttgggaagcg tttgaaagct ccggagcgtt tgttgaaagt ttaaaggtta      1200
     gatagtagaa atccgcacag ttaggagaga gtgaagggag aggaagagga agagaacgtt      1260
     atgtgaaagt gggtacccga gtagaaataa atgttagtaa agtagaaatg aataaatgtt      1320
     gatagtagtt ttgcgtttct ttaaatgttg tagttgaagt tattgtttcc ttatattgag      1380
     tgcactggtc gtaggatatt tttcacgttt cgttgtttgt tgtagtatag ttgtgttgtt      1440
     actccaagtc ggactgcttg ggtttctcag tcctccattt ttgtcctgaa gcgagaaggt      1500
     gaattgtggt cgggacgaac ttggcctgtg atgatacctg tcgaccacgt gcattcggta      1560
     tcggtagaaa gtcgagttgt cggttatgtt ttgagccggt cagagggtag agttttgagt      1620
     acttggatta cgtggagcat ttgctagatc gttcggtagt ttgtaggaaa acaggactcg      1680
     ccctgaggtt tgagtttgcc gggcaataga aattgacaag tggtcctcta aggaggtggc      1740
     gcataagcta cttgtttctc tcccaacccg aacgccctag cagattggtt cgctcgccgt      1800
     ctcgagccgg ctaca                                                       1815
//
ID   Gypsy-399_AA-I repbase;    DNA;    INV; 8245 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-399_;
KW   Gypsy-399_AA-I; Gypsy-399_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8245
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8245
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 125-125 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 8245 BP; 2652 A; 1475 C; 1682 G; 2432 T; 4 other;
     tttggcgccc aactgcaggt ttcaaattcg ttttttttgt tatttgttcc aattttatgc        60
     aagtatttat tcgttgttat ttcatgcaag tatttattcg ttagattaaa gttcagtaag       120
     gagtaaagcc gctttttgca tttaaacata tataattgtg gttgttaagt ttgttgtggt       180
     tttgtggagt attagttmaa gataatagtt atattaaaat ggctgccaaa tttcctcgtg       240
     cagaccacct taccaatgaa gaggtagact atgaactaat cattcggggt agaagagatg       300
     agactaaaga tgatttgaat gtgaaacatc gactactcag aaacttattt ttcgaggatg       360
     tgagagaaaa tagaacttac aactcacggt atacgatgga ccaagagtac gattatatcg       420
     caagtaaact ggacattcta aacaaaaggt tacagaaagg ccatgatgat aaaagcatct       480
     caaggcttaa gcattacttg atgagagttg aacgttgtgt agcagatgat cctcggtcat       540
     tacagttgag agatgaacta tgtcaggaga ttcactcgat tttgagtcga ttttcggcta       600
     aggatctacc taccaaagaa acagtagagt tggagcaaga atcaggagca ataggaggtc       660
     agggtataga tagtccgatc agagaacacg ataatagcga taagatgcaa ggtaaaacaa       720
     acgagcagga tgaagaaaat gctgttcagc acagaacttc aaaaggttct ttgggagcat       780
     tgcccaaggc caattctgtt gcaaataatg aaccatcaca gacgctttta gaacaggaaa       840
     atgaagaact tcgaaacaaa atttatttgc ttgaaaaaca gttaacggaa atggcttcca       900
     gggtacagaa ctccacggat aatatgcata ttcagactgt gcatgttcaa agagaatatc       960
     ctttgcgtca aacagaagcg tttcgtcgag accaagacgt aataaggcac tcagatagac      1020
     gaagcactct agggaaagaa ttttcaacgg gagaaaacta tagaaactta gaaacagtta      1080
     ggagagattt tcaaaattgt gaaccaaatg atggaccagc tcaagggaat aggcatagtt      1140
     tttcggcgtc aaatttagca gtattcaatg aacaacagga gggtcaattc agcaatagac      1200
     gaaatctgga ttattctatg gacgataata ggaatcgatg gagaaatgaa ccatcggagc      1260
     acagcgatag gggatatcca ggaataggtc tagaccatac acggggaaac aatgtgagaa      1320
     tggtaggagg tagccctagt caaccacaac ggaacagtcg aattttcaat agaagaaatg      1380
     acgctagaac taattgggat tatctcgatg aagaaggaca tagcgaatac ccaagaatgc      1440
     ttgcaagacg tccaattaat gaatttgaaa ttatcaacgc cgacaggcga atggagaaat      1500
     ggcacttaac atttagtggt gattctcgtc aaagatcttt agaagatttt ctccataaag      1560
     tgcgaagact mgctcgaatg gatcgaattg aagagcatgt attactccaa cgaattcaca      1620
     ccattttgag aggagaagca tacgactggt atttatgtta ttcggatgaa tttctaaatt      1680
     ggggagattt tgaggaaaga attaggtaca tgtacggaaa cccaaataag gaccaaggca      1740
     atcgacaaaa aatttatgaa cggaagcagc aacgcaatga gacgtttttg gctttcaaaa      1800
     tggaacttga acgattgaat aaacttctct ccactcctct ggatcagggt aggctttttg      1860
     agattatttg ggataacatg cgcccccatt acagatcaaa attagcctgc ataaccgtta      1920
     gggacctgaa tatgttagaa tattacgcct atcgtataga tgctaatgat tcgtctctgc      1980
     gtcaacgaga aggcccatta aaagcaaata atgcggtgca taacattcaa gtcgctactg      2040
     aatcagaaga ttcctattcg gctgaatcag aaacggagga agtctatgaa atcggaaaaa      2100
     aatttgacaa aaccaaacga gttacgaaca gaaccccaat cagctcacaa tctagagcta      2160
     atcgggagaa tgtagaggat acaagcatac cagtatgctg gaattgcaac aagagtggac      2220
     atctttggag atattgcaag gatccaaaga gaatcttttg ctatgcatgc ggaaacccag      2280
     gtaaaactac ggtttcatgc ccaaaccatt ctcgagaaac gcagcaaccg gttcagcatt      2340
     cgggaaacta gatttggggt gtattacggg gaaccagatc actccaaatg aagaaagtgt      2400
     tcccatgctc aaaccctttg aagacccktt cgcgcaaatt tgcgaagtca aagtacatac      2460
     tggcagttgt ccccacgtga ctgttaaaat cttcgacaaa gaatacgagg cattactgga      2520
     ttcgggtgca agtgtcagcg taacaaacat tgctgatatt gcacataaac atggtttaaa      2580
     gttacaccaa agtccgttcc gtattgttac agctgacaaa acagctcatg aatgtcttgg      2640
     gtatgtacat cttccaatag ttttccgtgg tgtaaccaaa atcataccta ctttaatagt      2700
     tccccaaatc gctaggaact taattttagg atgtaatttc tgggacgttt ttgggattaa      2760
     accaatgatg aaaggagaaa atggttttga acaggtggca actattacgg ttgaacctca      2820
     ttcgactgaa acaattgagt tttctttgtt acccattgaa actttaccaa ttctcgaaaa      2880
     agttgaacca gacacgacgc tagacattcc agctttagag cttccagaag cctccaaaac      2940
     aacgcctgaa acaatcgaga cggaacatgc cctgtccgat gaacaaagaa tggaacttgc      3000
     caaggctatc aaaacatttc cttgcactac agaaaatcgt ctaggtagaa cgtcgttatt      3060
     agaacatgaa attattttaa aggagggggc aaaacctagg cggcaacctt tgtacaggtg      3120
     ctcgccgacg gtacaagccg aaatggaagc ggaactggac agataccgga gaatggatgc      3180
     catcgaagag tgttcaagcg agtgggccag cgctctagtg ccagttcgca agtcgaatgg      3240
     taagctacga gtttgcttgg actcccgagg tgtcaatgct tggacaaaaa aagattcgta      3300
     ccctatgcgt aacatgggag agattttcca tagattaggt agtgcgaagt tcttttcggt      3360
     ggtggatctt aaggacgcat attttcagat tcctctaaaa gaggagtctc gagactatac      3420
     agccttcaga acaccacaag gattattccg ttttaaggtt tgtccattcg gccttaccaa      3480
     cgcccctttt acaatgtgcc gattaatgga ccgggttatc ggcttcgatt tagaacccaa      3540
     cgtttttgta tatctagatg atatagtaat agccacgaat acattcgaag accacatcag      3600
     gctgttgaaa atagttgctg aacgtttgaa agctgcaaat ttaactattt cgctcgataa      3660
     aagccgattt tgccgaaaac aggtatctta ccttgggtac ctgttgacgg aagacggtgt      3720
     ttcaatcgac aattctagga tctcgcctat tctcgactat gctcgtccta ggagcgtaaa      3780
     agacatccga agattactcg gtctcgcagg gttttaccag cggtttatac gcaattatag      3840
     ttcgatagtg gcaccaattt cagatctgct caaaaaaacg aaaagtaagt tcatatggac      3900
     agaagcggca gagaaagcct ttggtgatct aaaagcggct ttggtgtcag cacccattct      3960
     cagtaatccc gacttcaact gtccatttgt gattgaatca gatgcctcag ataacgcggt      4020
     aggggcagcc ttaattcaac tccaagacgg tcaaccaaaa gtcgtagcat attttagcaa      4080
     aaagctcagc aatacacaga aaaagtatgc wagtgttgag aaggaatgtc tcggtgttct      4140
     cctagcaatt gagcattttc ggcattacgt tgagggaaca cgcttcaagg ttgtcaccga      4200
     cgcaagaagt ctgttatggt tatttaccat aggggttgaa tctggaaact ctaaattgct      4260
     tcgatgggca ttgaagattc aatcatacga tattgaacta gagtacagaa agggaaagaa      4320
     caatattctg gcagattgcc tctcgagatc gctagaaacg attggaacgt tagcgataga      4380
     cccagaatat caggaactgc aaaacaagat taagcaagat cctatgaagt tccctgactt      4440
     tagaatcgtt gataatcaaa tatataaatt tgttaaaatg gccaacaaac tagaggacgg      4500
     cagatttcag tggaaaatgt acccaccgaa atcaagacga tcagaaatta tcaagaatgt      4560
     tcacgaccag gctcatctgg gcgctgacaa aacgatttcg gcaattaaag aacgttattt      4620
     ctggccctca atgggggtag aaatcaagaa gttctgtaga agttgcctgt tgtgtcaaac      4680
     cagtaaggcc acaaacaaaa atacaacacc accgatgtca gagcagaaga aaatggtaca      4740
     atacccctgg cagtttttgg ccatggatta tgtaggccca ctcccagcat ctggccgaaa      4800
     cagaaacaca tgtctgttgg tagtcaccga tttattttca aaatttgtcg ttgttcaacc      4860
     ttttcggcag gccacagccg aatccttgac acaattcgtc gaaaattcgc tgttcctttt      4920
     gttcggtgtg ccagaagtaa tcctttcgga taatggtacc cagttcacct ctaaacagtt      4980
     ccaatctcta ttggctaaat accatgtcaa tcattggcga acacccaatt atcatcccca      5040
     gataaatgac acggagcgag tgaaccgggt tatcactacc gcaatccgag catctattaa      5100
     aaaagaacac gcagaatggt ccaacaacat acaatatata gcgaatgctg ttcgtaattc      5160
     ggtgcatgaa gcaacaaact atacgccata cttcgtgctg ttcggacgta acatagtgtc      5220
     agatggaagg gaatatagaa aactgcgaga tgttgactca actaataatc atcaactaaa      5280
     tacagaagaa aaggaaaaac tactagaaga agtcagggaa aatcttaaaa aggcatacga      5340
     aaagcacgct tcatactaca atttacgctc caataagaat tgcccaacat acgtggtagg      5400
     agaaaaagtc ctcaaaaaga gcatggagca atcagacaaa gggcaaaagt tctgctcaaa      5460
     actggcaccg aaatacgtcc aggcagtggt taggaaagta gtgggcagcc actgttatga      5520
     tctggaagac ctaaatggaa aaaggctagg aattttcaat tgcaaattct tgaagaaatt      5580
     ggttcagtag agctgatttc ttacttggtc aagctatgta gctctcaact agttgagtag      5640
     tgacaattgc accatgatgc attagctctg gttgcagcga acacgctatg ccaccaattg      5700
     tgaagtttag catcagacgt agtctgatgc agcccccaca acaactctat ttactggggg      5760
     aatccttggt gcgaggacac cgttcaagcc caagaagaaa cttcacaagt gagttggtca      5820
     atgttatcta tcgaccgcct taggatagta aattctattt acaatcaggc ttgttctgga      5880
     attgcctatc ccctcgacaa gaagatagag cgagtcctcg atgagtgcat caggacgatg      5940
     acctaattaa acaaaaactc tgagcttaga aagcgctgac gaggagtacc ttaaagggaa      6000
     gttcaagcgg gagtctgaga tcggggatgc tcagacgttg atcgcattaa agactcggat      6060
     gtcgtccaaa gagaaccgac cgtgaagagc aatctaagtc aatcgagctt acagaacagt      6120
     caaagttgca aaaagaattt agatactaag gaactgtgtt ttaaaatcta ttcagagtct      6180
     tctagatcgt gaaaccaatc aaacatgacg tttttcaaat ttaattcata tacgtgacca      6240
     atcaagggta tttctttcat ttgatgaatg ttagcaagta gtgcacatcg agtcttatga      6300
     ctaatttagt acttaaggct aaatgattta ttactctcat tgtaaatatt tgtgaaagtc      6360
     tataaatata attttattta ttatttattg gattgtttat ttattaataa tatatataga      6420
     ttatttattt gatgctttat ttacattaat agatggaata tttatagctt taagagatgt      6480
     actttttatt tttgtttttc tttttttttg cttatttatt tatttatttt ctttatttat      6540
     ttgttagatg atttatatat ttattagatg tttgtgtatt tatttattgc ccatgtatat      6600
     cgaggtgaaa atacgcttgg aagcttcatt ccgtttcgtc atcaaagtgc ccatgagctt      6660
     ttccacatat gcatcgctag aaccgttttg tagtaacgcc actgtctgat tgcacctaaa      6720
     agaaagcaaa ataattaatg catgctcaat tatcaatctg caactggaat ccaacttatc      6780
     tgtccaatgt aaagctctca tccagaaact acaattcccg tccagtcgta gatccaaaaa      6840
     acaggctatt tgtccagcgt ttcttcagca ataggccgtt tctccaccaa aataaaacca      6900
     aaatcgatgt ctggttctgt accgcatcca tctcatccat tccatcgtct acctgaagac      6960
     aaaccaatca atatacatta attcttaccg ttcaaaatcc aaatggtaac gttattactt      7020
     ttctaaattc acaattaaaa atatagtcta cttcactaat aactaaaact gaatccactg      7080
     ttaaaaccac aacaacttcg tagcagctca taatgttttg acgtttcggc ggttcattgc      7140
     gagtgatcga tgaacatgtt catagttcat tagctggggt tatgtcgttc atttctcaca      7200
     agtttcattt agtcgagtta gtgtctcgac gtgagaaaca tgagagaagt ggtatgtaga      7260
     aagaatgaat tcagcatatg tcgtatgttg ggttaagtta taatatgaaa gtgctctctt      7320
     cctagccaat gcatttggta tagaagttga tgcacgatca tatgtatgat aaattgtagg      7380
     tatttaagtt tgtaccttag aaagatggtg taccgaggtt cagcctcgat gttcgatctg      7440
     agggcaaaca gtgaggtgaa tttagtttga agtatgttac tcatcatcag gtatggggta      7500
     gcttcattca tagatgagcc ggttacgttg cgtattgcag cctatgtggg agattggata      7560
     agattcgatc tctaatcgat gttgagttcg ttgtcgtcat tttagagcat ggctgagcaa      7620
     gtttattgat tacttcaatg aaccaaagaa ccgtactata ttgaagattt tgagacaacc      7680
     attgtaaaca taaattatat agctcatttt catatttatt tatttacatg gttattattt      7740
     aattacatat ttatttatct tgtatgtagt taattaattt atttattcat gtatttatta      7800
     tttatgtatt tatttattta tctattttgt tatttattta ttcagtcatt ttttttattt      7860
     atttatttat ttatttattt atttatttat ttatttattt atttatttat ctatttattt      7920
     atttatttat ttatttattt atttatttat ttatttattt atttatttat tttttattta      7980
     tttatttatt tatttatgaa cgtatttgtt tattcgttca tacaattgct tgtttattta      8040
     tttatttgtt atccgttaaa ttcatacatt gatcggatgt tgcgttttga ttgaaactgt      8100
     gtttatattg atggaaattt atgtatgaga ataatttatt tacaatgtgt tttttgtctc      8160
     tagttaagta atctgttaag tttgaagtta cgaaaatttg gttgtactcc tacaaccaaa      8220
     ttttcgtaaa agaagtccgg tgtta                                            8245
//
ID   Gypsy-399_AA-LTR repbase;    DNA;    INV; 1777 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-399_;
KW   Gypsy-399_AA-I; Gypsy-399_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1777
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1777
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 152-152 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1777 BP; 491 A; 345 C; 433 G; 508 T; 0 other;
     tgtagcggta ttccgaaatt aattaaatta attagtatta ttgcataata taataacgaa        60
     tagtaatatg attcagtcac tgttgaaaaa gaacaatcca ataagttgat aatcttgcat       120
     acaaaaatga atccatatag cttgtaagta aatcctgcat aaaagttcac tcattttaag       180
     gtcggttcac tcacttggtg cgcaaattac tcatctcacg aaacatgcgt tcggatccgt       240
     tggtttgaga tttatctccc aactggagca cttgtcgttg taagaataag aaattacata       300
     atcgaaaaat gatttgaacg ggctagctag atgcgaaaag tttggaaggg aaaaggacaa       360
     aacaactgat cggctcataa ggtaatcggg actcgtcttt gataagatcg gtccatgatt       420
     tccggaacga agaccaaaac ccatcttgcg acctatctga ggatctacca aagtctatct       480
     cgtccacttt aatctgaccc gtggaagagg cagcagcgtg aagtctttct tttagtttcg       540
     cggtgtgtgt tctaaggttt gtaaaacgtg agaagtgtcc caagtcagtg taataagtgt       600
     tagtttcttc ctttccgata ggtatagtgc taatttagct aattagtaat tagccagtgc       660
     ggtactgtgc gtgatctgga gaattcgata aaaggtaaaa ttcagtgcta tcgatttata       720
     atatgtagct aaccgatccg aacagccgtt cgacggcttt tattgtcagc ttttgttcgt       780
     ccgctttacc tcacgctcca caccccgcgc ctatcgacca gccttccacg tcattctacc       840
     acactgctga ccccacgcgc cagcattaaa ggtcccaact accggccgga gttggaaggg       900
     agttgctccg tcaaccaagc actccggaaa gagctaattt cccgccaaag ctcattacgc       960
     gccgacggcg gatttgccaa ttcagcagca aagcgagtga gatattcatc gtgttcactt      1020
     gggtgaatca gcaccggcga cgcgacgcag cagacagggg gacgtcggta aagcagaaga      1080
     caaagtgagt agaagcctga taattgtttg catgcatgca gagctttaga gagtggaaag      1140
     tttgatagca tgaaggaaaa gtaggtagaa tagaaatccg cacagttgag ttcaggagag      1200
     aagagaagaa agcttggtga aacaggaaag gaagtagggt acccgagtaa aatgtgatgg      1260
     caatatatgt atgtttaaaa ttgaagaatt tgttgttagt tttcatgtag ttgaatgtgg      1320
     tctcaattag ttctcccgtt ggttgttaca ctggtctgaa gagtcttctc acgtttcggt      1380
     cgttttgttg taaggtctag tagtgttgta ctccaagtgt ggactgcttg ggaatctcag      1440
     tccctcgttg ttgcttgtga aacgtgtaga ttgatgtttt cgagatagtt tggcctgtga      1500
     tgagaactag tcgcccttgt gtcatcgttc ggtaggaagt cgggttcttg attacctttg      1560
     cgttggttac gagtagcgtt ctgattactt gaagaacttt gagcatctac tagaacgttc      1620
     gggtagttga ggaaaattga actcgccctg gggtttgagt tttgccgggc aattaaacga      1680
     caagtggtcc tcttaggagg tggcgcgtaa gccatttgtt aatcaatatt tcgaacgccc      1740
     tagtagatcg gctgctcggc ctctctggcc ggctaca                               1777
//
ID   Gypsy-39_AA-I repbase;    DNA;    INV; 3934 BP.
XX
AC   AAGE02027584;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_AA_;
KW   Gypsy-39_AA-LTR; Gypsy-39_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3934
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027584; Positions   58842   62775.
XX
CC   Positions [2983-3471] - Integrase core
CC   'ACAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(37..2385,2389..3930)
FT                 /product="Gypsy-39_AA-I_1p"
FT                 /translation="MNFTKPPEFNVGDSWPLYEERLKRFFVAYEIGEDEDE
FT                 RRAAFLLTAVSMEVYQIVKNLCFPELPEQKKFSEICELLKQRFTPTLVVFR
FT                 ERARFFEARQGDAESVVEWSTRLKKLAADCEFGEDLNTFIKNLFVVGLRRG
FT                 PIFERVCEEDAATSFDDLMKIAQKKECTLQQRGVLDVHKIQYGSDKKQSSS
FT                 GAKCFACGRGDHDFRKCQYKSYVCKLCDKKGHLAKVCPTKTLEQPKEKKKS
FT                 FGAEKRGPRVNHLRINKLDVPPPVMVRIQVNGCPIRFEVDTGSPVNAVSKE
FT                 LYDTLFSALPLNINSKDEFICYNGSGFRAVGTFNAEMQYKDHVSTEEIYVF
FT                 EGTRQPLLGRRTMCRWNLKIDFCHVSKEEVDCNKQLKPLLSKHAEVFDGEL
FT                 GHYKHGKVRLALKDEAVPKFCKPRKVPLAFKEKVEAELDRLEETGIISKAP
FT                 SSEAEWGTPLVPVLKKDSSIRLCADYRITVNPFLLDDHHPFPVIEEIFAAL
FT                 QGGKYFSKLDLKNAYYQLEVDNDTKKLLAWSTHRGVYWMNRLPFGTKPACS
FT                 IFQATLEKVLQGCRGTVIYLDDIMVSGRTIMEHLANLDAVLTRLKEAGFLL
FT                 NKMKCEFFVQKVGYLGHVIDQDGLHKDPEKVKAIMDVKSPTDVKEVRAFVG
FT                 LANYYAKFCPSLAQCLKPLYELLKDDVKFVWTKNRQKAFEMAKKLLSEDTV
FT                 LVHYDPKLPVKLYCDASNEGIGAVIVHEFPDKSERPISFASRIYKKHEANY
FT                 SVIDKEALAIYYGINKFNNYLQGRHFVLMTDHPLTGLFSPKGVPETAAGRL
FT                 QRWAAFLSGYDYDIQHVKGVQNVPADYLSRYPTGSDKCVEDEDEDELASFL
FT                 NFIEAETRSLVDRKQIVIESRRDKLLSRVAEYVKFGWPNSIQEDNLKTFFQ
FT                 KREELTVEEDVLLWGYRIVVPVKLRKFLLDELHSVHLGIVKMKSLARSYFW
FT                 WPSLDKEIEDICKKCESCIQQRPERSDPISPWRLTNAPCDRVHVDHFSFRG
FT                 ADYLVLLDSYSKWIEAFPVRTQTSKESIEKISEFTSRFGSIGTLVSDNGTA
FT                 FSSEEFQAFCSSRGIKHLRTAPYSPCSNGAAENAVKTVKNALKKLSSDPAF
FT                 QRKSVALQLSSYLEMYRATKHATTGESPFKLMFGREMRIRFDKLKADPERR
FT                 QREAIEEYNVKKKNVNFEVGETVYARDYRNPKKPLWMRARVIKKLGAVLYE
FT                 CLVAELGVIKRRSHQLLKYPFDDYEEDTKRTNNNDVQLPNEQSDDEMDYVS
FT                 ISESDAEEQTVQPRPAGSYVTRYNRVVTQPRRFGGE"
XX
SQ   Sequence 3934 BP; 1107 A; 822 C; 1062 G; 943 T; 0 other;
     ttttggcgac gaaaggagaa aggaagttct gcaagaatga attttaccaa gccaccggag        60
     ttcaacgttg gagattcatg gccactgtat gaagaacgtt tgaagcggtt ttttgtggcc       120
     tacgaaatcg gtgaggatga agacgagcga agagcagcgt tcctgttgac ggccgtttcc       180
     atggaagtat atcaaatcgt gaagaatttg tgtttcccgg aactgccaga acagaagaag       240
     ttttccgaga tctgcgagtt gctgaaacag cggtttaccc cgacgctggt tgtgttccga       300
     gagcgagcac ggttctttga agcccggcaa ggagatgcag aatcggtcgt agaatggtcc       360
     acacgcctga agaagttggc cgccgattgc gaatttggag aagacctgaa cacgtttata       420
     aagaatttgt tcgtggtggg cctccgtcgt ggtccgattt tcgagcgagt ttgcgaggaa       480
     gatgcggcaa cgagtttcga cgatttaatg aagattgcgc agaagaagga atgtacccta       540
     caacagcgag gagttctgga cgtccataaa atccagtatg gttccgacaa gaagcagtca       600
     agttctggag cgaagtgttt tgcctgtggt agaggcgacc acgatttccg gaagtgccag       660
     tacaagagtt atgtgtgcaa gctctgcgat aagaagggtc acttggcgaa agtttgcccc       720
     acgaagacgt tggagcagcc aaaggagaag aaaaaatcgt ttggagcaga gaagcgagga       780
     ccaagagtga accacctgag gatcaacaag ctggatgtgc caccaccggt gatggtacgc       840
     attcaagtca acggatgccc tattcggttc gaggtggaca ccggtagtcc agtgaatgcc       900
     gtttccaagg aactttacga cactttgttt tctgcgctgc cgttgaacat caattccaaa       960
     gatgaattca tttgctacaa tggatctggt ttccgagcgg tcggcacatt caatgcagaa      1020
     atgcaataca aggatcacgt gtccacggag gagatttacg tgttcgaggg aacaagacag      1080
     ccgttgctgg gccggcggac catgtgccgt tggaacttga aaatcgattt ttgccacgtt      1140
     tcgaaggaag aggttgattg taataagcag ctgaagccac tattgagtaa gcatgctgag      1200
     gttttcgatg gtgagttggg ccattacaag catggcaagg tgcgactagc ccttaaggat      1260
     gaagcagtcc cgaaattctg caagccccgg aaggttcctc tcgcattcaa ggagaaggtg      1320
     gaggcggaac tggaccggct ggaagaaact ggaatcattt cgaaagcacc atcgtcagag      1380
     gccgaatggg gtacaccact tgtccccgtt ctcaaaaagg attcgtcgat acgactatgt      1440
     gcagattatc gcatcacggt caacccattc ctgctggacg atcatcatcc gtttcctgtg      1500
     atcgaggaaa tttttgcagc gcttcaagga ggcaagtatt tttcaaagct cgacctgaag      1560
     aacgcgtatt atcagctaga ggtggataat gatacaaaga agctgttggc ctggagcacg      1620
     cacaggggtg tctactggat gaatcgactt ccgttcggaa cgaagccagc gtgttccatt      1680
     tttcaagcga cattggagaa agttcttcag gggtgccgtg ggacagtaat ttatctggac      1740
     gatataatgg tgtcaggccg gaccattatg gagcacttgg cgaatctgga tgccgtactg      1800
     acccggctca aggaggccgg attcctgctg aacaaaatga agtgtgagtt tttcgttcag      1860
     aaagttggtt atcttggtca cgttatcgat caggatggct tacataagga tcctgagaag      1920
     gtgaaagcaa ttatggatgt caaatcaccg acggatgtca aggaggttcg agcgtttgtt      1980
     ggcctggcca actattatgc caaattttgc ccaagtttgg cccagtgttt gaagccgtta      2040
     tacgagctat tgaaggacga cgtcaagttt gtgtggacga agaaccggca gaaggctttc      2100
     gagatggcga agaaacttct ttccgaagat acagtacttg tccactacga tccgaaactt      2160
     ccagtcaagc tttattgtga cgcttcgaac gaaggaattg gagcagtgat tgttcacgag      2220
     ttcccggaca aaagcgagcg tcccatctca tttgcgtcca ggatctataa gaagcatgaa      2280
     gctaattact cggtaatcga caaggaagca ctggccattt attacggaat caacaaattc      2340
     aacaattatt tgcaaggccg gcattttgtg ctgatgacag accactagcc attgaccggt      2400
     ctattcagcc ccaaaggtgt cccggagacg gcagctggtc ggcttcaacg ttgggcggct      2460
     ttcctatcag gttatgatta tgatattcaa catgtgaaag gagttcaaaa tgttcccgca      2520
     gattatttgt ctcggtatcc caccggtagc gacaagtgtg tagaagacga agacgaggac      2580
     gaattagcaa gttttctgaa tttcatcgaa gctgaaactc gttcactggt ggaccgcaaa      2640
     caaatcgtta ttgaaagccg tcgtgacaag ctgctcagcc gtgtagctga atacgtgaaa      2700
     tttggctggc cgaactcaat tcaagaggac aatctgaaga cattttttca aaaacgagaa      2760
     gagctgaccg tagaagaaga cgttctcctg tggggctacc gcatcgtagt tccagtcaag      2820
     cttagaaagt ttctgctaga cgagctccac tctgttcatt tggggattgt gaagatgaaa      2880
     agcttggcca gatcgtattt ttggtggcca tcactagaca aagaaattga agatatttgc      2940
     aagaaatgtg agtcatgtat ccagcagcga cccgaacgga gcgatccaat ctcaccatgg      3000
     cgtttgacga atgcaccctg cgaccgagtg cacgtggacc atttctcgtt ccgaggggcg      3060
     gattacctgg tgctgctgga cagctatagt aaatggatcg aagcattccc ggttcgtacg      3120
     cagacttcga aagaatcaat cgagaagatt tcggagttta ccagcagatt tggttccatc      3180
     ggtacactgg tgtcggacaa tggaactgcg ttttcttcag aagaatttca agctttctgt      3240
     tcatcccgag gaattaagca tttgcgtaca gcaccatata gtccctgttc caatggtgct      3300
     gcggagaatg ctgtgaagac tgtgaaaaat gcgttgaaga agttgtcatc ggatccggca      3360
     ttccagcgta agtcggtggc gttacaactg agctcatatc tggagatgta tcgtgccacc      3420
     aagcatgcaa caaccggaga gagtccattc aagctgatgt ttggaagaga gatgagaatc      3480
     cgattcgata agctgaaggc agatcctgaa cgacgacaac gtgaggcgat tgaagaatac      3540
     aacgtcaaga aaaagaatgt gaatttcgaa gtaggagaaa ccgtgtatgc cagagactac      3600
     cgaaacccca agaaaccatt atggatgcga gcgagagtca tcaaaaagct tggtgcagtc      3660
     ctctatgaat gtctggtagc agagctagga gttatcaagc gtaggagtca tcaattgctg      3720
     aagtatccat tcgatgacta cgaggaagac acgaagagaa ctaacaataa cgatgtgcaa      3780
     cttccaaacg agcaatctga tgacgagatg gactatgttt caataagtga atcagatgct      3840
     gaggagcaaa ccgtacaacc acgtccagcc ggatcatatg ttaccagata caatcgagtg      3900
     gtaacacaac cacgtcgctt tgggggagag tagt                                  3934
//
ID   Gypsy-39_AA-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   AAGE02027584;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_AA_;
KW   Gypsy-39_AA-I; Gypsy-39_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-269
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02027584; Positions   58573   58841.
XX
SQ   Sequence 269 BP; 75 A; 62 C; 59 G; 73 T; 0 other;
     tgtggtgtat tgaaagcaat gcttttacgc gctgcagcaa caagcaaggc ggcacaagcg        60
     tggcgtcgaa aagcgtagcg cgtggcgttg ttaactattg cggcgatgca gcactgctac       120
     cttggagatc tgttgccgcc tagcaaccag ccggttgttg attttaactg ctatataaac       180
     cttccaattt ctgtactcta gtcagtttaa gattcagctt caataaagaa acaactaatc       240
     ttcaaacaag tcttcatcaa gatcctaca                                         269
//
ID   Gypsy-39_AnFu-I repbase;    DNA;    INV; 4358 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4358
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2923-2923 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..4282
FT                 /product="Gypsy-39_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSKDEMLCILQNANIPVSPTATIPQIRRLYEETCSI
FT                 VSVDNNEQEQKESVLGNETDAVSVMSKMATSENGGNVAAVVNEAVSGKNNE
FT                 IGTTANTQLNKKMLPLSEAIVHVEGLVEKFSGDKGEDVFTWIDHLEQTFMM
FT                 LEIYGVQRIIITRRMLEGTAAMLAKSSVYTEYDELKHKLVTNFSSKIPAEE
FT                 VYRQLRKRKLLVNESTLRYIIDMESIAKKGAIPEQELISIILDGIGDPINA
FT                 AAIRFATKNMDELRAALQRYEFIRPSKTNRATETSNTTRPDSAVKCYNCSR
FT                 YGHFQQDCRQPRRPPGSCFSCHEMGHAFRDCPRRIQSTSAAIQEEGANEAV
FT                 GFQHVEPIQEVSVAFKISNVFETLSSRVLSLFDTGSPKSFINEQLVPSLTH
FT                 VPIFSGYHGLGDRPLTSLGQAEGKISFRDSNVYHTFIILPKSQMAWPIIIG
FT                 RDLLKKLNINLLYVCYRYSFEDFMKYKKLNKNELKPHVRERLGLLGILKRD
FT                 YEKGVQLQSIRPVELKTSLEAESISTTFNELCAIDINPEVEKLDIGSNLTR
FT                 EQFNLVASGIHSNYLKVPNEQIKQFKHSMTINVTNNTPIYCKPRRLSFAER
FT                 NQVRDIVQDLLQKEIIRPSNSPYASALVLVRKKSGELRMCIDYRPLNKITI
FT                 RDNFPLPLIDTCLEHLANKTVFTLLDLKSGFHQVNMHEDSIKYTSFVTPDG
FT                 QYEYVKMPFGLKNAPSEFQRFINSILSEYIHKGKLVVYLDDIIIASKNIAE
FT                 HIETVNKVLRTIKENGLELRLDKCKFGYDNLDYLGYHVNSHGIHPNNHHIK
FT                 AIQNYPCPKTAKEVQRCLGLFSYFRRFVPSFSSIAKPLSNLLKEKTPFLFD
FT                 DACVKAFNELKSKLLNAPVLAIYDPERETELHCDASSLGFGSILMQKQDDG
FT                 KFHPVAYFSKTTSPSEAKLHSYELETLSVIYALKRFHPYVHGIHIKIVTDC
FT                 NSLVETLKNRNCSAKIARWSLFLEDYDYTMQYRPGNVMSHADALSRNGMTC
FT                 AVDDVDIDMQLQIAQSQDPEIKKLKAELESNPIAGYLLINGIVYRQPSDEK
FT                 LQLIVPKGMITNVIRNIHEKIGHLGKDKCCTQLSKNYWFAGMKNHVENYIR
FT                 NCLKCIIYSAPARKDQRNLHSIPKVPIPFDTLHIDHLGPLPCLRSKKKYIL
FT                 VVIDSFTKFTKLFPATSTGSREVCNALKQYFAFYSRPRRLVSDRATCFTSN
FT                 EFKRFLAAHNIVHVLNAVASPQANGQVERINRVVRPILSKISDPHDHADWS
FT                 SKLQMVEYALNNSVQSSTRYMPSVLLFGIEQRGTIIDELTEFLDEKIEHPR
FT                 DLEKYRSDASNNIIRSQHTNQNQFSKRHRPAVEFEEGDLVAIHNIDTTPNT
FT                 NKKLNAKYKGPYVIHKRLPHDRYVVRDVDGCKISQIPYDGILESNKLRSWI
FT                 AVNN"
XX
SQ   Sequence 4358 BP; 1442 A; 832 C; 865 G; 1219 T; 0 other;
     gttcagaagt gggatagtat ttgcaaaaat gccctccaag gacgaaatgt tatgcattct        60
     acaaaatgcg aacattcctg tgtctcctac tgctacgata ccccagattc gtaggttgta       120
     tgaagaaacg tgttcaattg tgtcagtaga caataacgaa caggaacaaa aggagtctgt       180
     acttggaaat gaaaccgacg ccgtatcggt gatgagtaaa atggcgacta gcgaaaatgg       240
     tggcaacgtt gcggctgtag taaatgaagc agttagcgga aaaaacaacg aaattggtac       300
     aactgcaaat acgcaactaa ataaaaaaat gctaccatta tccgaagcta ttgtccacgt       360
     ggaaggctta gtggagaaat tcagtggtga taagggagag gatgtattta cctggatcga       420
     tcatctcgag caaacattta tgatgctcga aatatacgga gtgcagcgaa tcataatcac       480
     ccgtcgaatg ttggaaggaa ccgctgccat gttagctaaa tcatctgtgt acaccgaata       540
     cgatgagttg aaacacaagc ttgtgacgaa tttttcttct aaaatcccgg ctgaagaagt       600
     ttatcgccaa cttcgcaaaa gaaagctgtt agtgaatgaa tccacattgc gctacataat       660
     cgatatggag agtatcgcca aaaaaggtgc cattccggag caagaattaa tctcaattat       720
     tctggacggg attggagatc cgatcaacgc cgcggccatt agattcgcaa cgaaaaatat       780
     ggatgagtta agagccgctc tgcaacgata tgaatttatt cgaccatcta aaacgaaccg       840
     ggcaacagag acgtcaaaca ccactcgacc tgactccgct gtaaaatgct acaactgttc       900
     ccgttacgga catttccagc aggattgtcg gcagccacga cgcccaccag gatcgtgttt       960
     ctcgtgtcac gagatgggac atgccttccg tgactgtcca cgacgcatcc agtcaacatc      1020
     ggctgcaatt caagaggaag gagcgaatga ggccgtcgga tttcaacatg tagaacctat      1080
     tcaagaggtg agtgttgcat tcaagatttc caatgtgttt gagactctat cctcacgtgt      1140
     gctttctctc tttgatactg gtagccccaa gagctttatc aatgaacagc ttgtaccatc      1200
     cttaactcat gttcccattt tttcgggata ccatggattg ggtgaccgac ccctaacatc      1260
     attaggacag gcagaaggaa aaataagttt tcgtgattcc aatgtttatc atacgtttat      1320
     aatactacca aaatcacaaa tggcttggcc catcattatt ggaagggatt tattgaagaa      1380
     actgaatatt aatttgcttt atgtttgtta tcgttattct tttgaagatt tcatgaaata      1440
     caagaagcta aataaaaatg aactaaaacc acacgtgagg gagcgtcttg gactgttggg      1500
     gattttgaaa cgtgattatg agaagggtgt tcaattgcaa tccattagac cagttgaatt      1560
     gaaaacaagt ttagaggcgg aaagcatttc cacgacattt aacgaacttt gtgctattga      1620
     tattaaccca gaggtggaaa aattagacat tggttcaaat ttaactcgtg aacaatttaa      1680
     cctagtagct tcgggaatac attctaatta tctaaaggta ccgaatgagc aaatcaaaca      1740
     gtttaaacat tcgatgacga ttaatgttac aaacaatacg ccgatatact gcaaaccgag      1800
     gcggttatct tttgcagaaa gaaatcaagt gcgagacata gtgcaagacc ttttacaaaa      1860
     agaaattatt cgacccagta attcaccata tgcttctgcg cttgtgttag ttcgtaagaa      1920
     gagtggtgaa cttcgtatgt gtatcgatta ccgcccatta aataaaatta cgatacgtga      1980
     caactttccc ttacccttaa ttgacacctg tcttgaacac cttgcaaata aaacagtttt      2040
     tactctcttg gatttgaaaa gtggctttca tcaggttaat atgcatgagg attctattaa      2100
     atatacttct ttcgtaactc cggatgggca gtatgagtac gtcaaaatgc ccttcggttt      2160
     aaaaaatgct ccttcagagt tccaacggtt catcaattca attttgagtg aatatataca      2220
     caaaggtaaa cttgtagttt acttagatga cataattata gcatctaaaa atatagcaga      2280
     gcacattgag acagtaaata aagttttgag aacgataaag gaaaatggcc ttgaattacg      2340
     gttagataaa tgtaaattcg gttatgataa tttggattat cttggttatc atgtgaattc      2400
     acatggaata catccaaata atcaccatat taaagccatt cagaactacc cgtgcccaaa      2460
     aacagcaaaa gaagttcaac gttgtttagg tcttttttca tatttcagac gttttgtccc      2520
     atctttttcc agtatagcca aaccattaag caatttgtta aaagaaaaga cgccattctt      2580
     attcgatgat gcttgtgtca aggcatttaa tgaattgaaa tcgaaactat taaacgcccc      2640
     agtgttagcc atatatgacc ctgagagaga aactgagcta cactgtgacg ctagttcgtt      2700
     aggcttcgga tcgattctta tgcaaaagca ggacgatggg aaattccatc cagtagcgta      2760
     tttctccaaa actacttctc caagtgaagc taaactacat agttatgaat tggagacact      2820
     atcggtaata tatgctctta aacgtttcca cccatacgtg catggaattc atataaaaat      2880
     tgtcaccgat tgtaattcac tagtagaaac cttgaagaat cgaaattgtt ccgcgaaaat      2940
     cgctagatgg tcgctatttt tggaggatta tgactatacc atgcaatatc gacctggtaa      3000
     cgttatgagt catgctgatg ctctaagtcg aaatggaatg acctgtgctg tagatgacgt      3060
     tgatattgac atgcagttac agattgctca gtcacaagat ccggaaatta aaaaactcaa      3120
     agctgaactt gaatccaatc caatagctgg atatttattg ataaatggca ttgtgtatcg      3180
     tcagccttct gacgaaaaat tgcaattgat tgttccgaaa ggtatgataa ctaatgttat      3240
     acgtaatatt cacgagaaga ttggccacct aggtaaagat aaatgttgca ctcagttaag      3300
     taagaactac tggttcgcag gtatgaaaaa tcatgttgaa aattatatta gaaattgtct      3360
     taaatgcata atttattctg caccagctcg aaaagaccaa cgtaacttgc acagcatacc      3420
     gaaagttcca attccttttg ataccctcca tatagatcat ttaggtccgc taccttgcct      3480
     tcgatcaaag aagaagtaca tacttgtagt aatcgattca ttcacgaagt ttacaaagct      3540
     tttcccggct acatcaacgg gcagcagaga agtctgtaac gcattaaaac aatatttcgc      3600
     tttttacagt cgtcccagac ggttagtaag cgatcgtgcc acatgcttta cgtctaatga      3660
     gtttaaacga ttcctcgccg ctcacaatat tgttcatgtg cttaatgcag ttgcttcacc      3720
     tcaagccaat gggcaggtgg aaagaataaa tcgagttgtt agacctatct taagcaaaat      3780
     atctgatcct cacgatcatg ctgattggag ttcaaaatta caaatggtgg agtatgcgct      3840
     aaataactcc gttcaatcat caacaagata catgccgtca gtattgttgt ttggtatcga      3900
     acaaagaggt actattattg atgaactaac agagtttctt gatgaaaaga ttgaacatcc      3960
     aagagattta gaaaaatacc gttctgatgc ttctaacaac ataatacgtt cacagcatac      4020
     taaccagaac caattcagca aaagacaccg tcccgcagta gaatttgaag agggagactt      4080
     agtagccatt cacaacatag atacaacacc aaataccaat aaaaagttaa atgcgaagta      4140
     taaagggcct tatgtaatac ataaacgtct cccacacgat cgatacgttg ttcgtgatgt      4200
     tgatgggtgt aaaataagtc aaataccgta tgatggtatt ttagaatcta ataaattaag      4260
     atcatggatt gcagtgaaca actaagcctt ctcaaaaatc gcatcgcaac acaaaaagaa      4320
     aaattgaggt caatttttgt ggtcaggaaa ggccgagt                              4358
//
ID   Gypsy-39_AnFu-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-168
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2851-2851 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 168 BP; 61 A; 27 C; 29 G; 51 T; 0 other;
     tataaacatt gtaaaattat aaatcttggc attttgacat ctgacataat taatatgaac        60
     aaccctgtac atgtcagatt aaaaaataca gatgtgtgat cgtcaaccga cgaagcggac       120
     gaaactttgt gcttggtgct ttgtgcttac gaaagaaact aatttaca                    168
//
ID   Gypsy-39_CQ-I repbase;    DNA;    INV; 4752 BP.
XX
AC   AAWU01034372;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_CQ_;
KW   Gypsy-39_CQ-LTR; Gypsy-39_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4752
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 457-457 (2011).
XX
DR   Genome; AAWU01034372; Positions   52270   47519.
XX
CC   Positions [3592-4056] - Integrase core
CC   'CAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4740
FT                 /product="Gypsy-39_CQ-I_1p"
FT                 /translation="MSDSDAQLLYQEQLRQERLRQEQLQQEQLRQEQLREE
FT                 QLRQEQLRQEQLQEQRRQEQLQEQRRQEQLQQEQLRQEQLRQQQLQNPDPM
FT                 IRMMGMFEQLVASVQQTVQQQQQFMERFSRSATQPPPNPEQIIDSLAGNIK
FT                 DFRYDADNSVTFAAWYSRYDDLFAQDAARLQDDAKVRLLLRKLGLPEHERY
FT                 VSFILPAVPKDFSFADTVDTLKSLFGAKESVVSRRYRCLQISKQPTEDHVS
FT                 YACRVNKLCVEFDLGKLTQDEFKCLVYVCGLKSGSDAEIRTRLLSKIEENT
FT                 NVTLQQLSDECQRLLNLQHDNAMIETPSTSDVNKVEQRFDRNKSNRRDRDQ
FT                 QPYAAGKSKSKPPRPCWFCGADHYVRDCTFRNHKCADCGVTGHREGYCSSA
FT                 KPLKPFKRGGPRDSVSSNVVVINECTVQKRRRFVSVDFGGTPIRLQLDTAS
FT                 DITVISKELWNEVGCPRLSPPSVRAKTASGTELSLNGEFRCDITIAGSTRN
FT                 ELIRVTEKPLQLLGSDLVDSFGLASIPMDSYCCNVSSVPDPAPALKSAFPK
FT                 VFSKNLGLCTKTKVKLELKENCRPVFCPKRPVAYAMVEAVDRELDRLQQLN
FT                 IITPIDYSEWAAPIVVVRKANGSIRICGDYSTGLNAVLQPHQYPLPLPEDI
FT                 FAKLANCKVFSQIDLSDAFLQVEVDEQDRHLLTINTHRGLYLYNRLAPGVK
FT                 NAPGAFQQITSTMLAGIPAASCYLDDVIVGGATQEEHDRNLKAVLQRIQDY
FT                 GFTIRLEKCSFGKTEIRYLGHIIDSRGLRPDSAKIEAIVNMPPPTDVSGVR
FT                 SFLGAINYYGKFVPNMRMLRYPIDKLLKEDAKFVWDSECQKAFEKFKQILT
FT                 SGLLLTHYDPRQEIIVSADASSVGLGATISHKFPDGSVKVVQHASRALTKA
FT                 EQNYSQPDREGLAIVFAVTKFHKMIFGRRFLLQTDHAPLLRIFGSKKGIPV
FT                 YTANRLQRFALNLLLYDFSIQYVSTDKFGDADVLSRLINQHVRPEEDYVIA
FT                 SVRLEEDIRSVATESINALPLSFRAVAKSTQSDPQLRKIYRYVLEGWPRAK
FT                 VADPEIRRYQTRADSLTVVDGCILFAERLVIPAQHRKRCLEQLHRGHPGMV
FT                 RMKQIARSYVYWPSLDDEIVGYVKACQPCASVARSPPHSAPVPWPKAAGPW
FT                 QRIHIDFAGPINGDYFLIAVDSFSKWPEVVRTQRISALATIAILRRMFSQL
FT                 GMPTLIVSDNGTQFTSAEFAEFCASNGIHHTTTAPYHPQSNGQAERFVDTF
FT                 KRAVKKISEGRGTIEEALDIFLLAYRSTPNRCAPEGKSPAEIMFGRKIRTC
FT                 LELLRPPADPEPPQKEDQRRSFAKQDLVYAQVHSGNAWKWTPGVILERIGS
FT                 VMYNVHVGNQRVIRSHINQLRSRSESGPAASLCAKPKALPLDVLLGEWKLP
FT                 QPSLVPELPPLSPMQLTPRPSSLELPDPPETQTSASSTPRPSTPESPDQVE
FT                 TPPCASSTPRLGSLPPQESGATPSSSAASSLSSSSSSSTSEPTIVPQLVPE
FT                 LRRSDRNRRPPVRFDYYQLY"
XX
SQ   Sequence 4752 BP; 1119 A; 1455 C; 1254 G; 924 T; 0 other;
     gtggcgacga aaattcgtcg aatcgccggg attttattcg tttttcgaag gtgggaatcg        60
     tcctaaccta aaacaacaaa aaaaatttcg gcacccgcgt gcaaacgaag gaggagctcc       120
     agcggatccg aaatgagcga ctcggatgcc cagctcctct accaggagca gcttcgccag       180
     gaacgactgc ggcaggagca gctccagcag gaacaactac gccaagagca gctccgggaa       240
     gaacagctcc ggcaggaaca gctgcgccaa gaacagctgc aggaacagcg ccggcaggaa       300
     cagctgcagg aacagcgccg gcaggaacaa ctccagcagg aacaactccg tcaagaacaa       360
     ctccgccagc agcagctgca gaatcctgat ccgatgatcc ggatgatggg gatgttcgag       420
     cagctggtag cttcggtgca gcagactgtc cagcagcagc aacagttcat ggagcggttt       480
     tcaagaagcg caacccagcc acctccaaac ccggaacaga tcatcgactc gcttgctggg       540
     aacatcaagg acttccggta cgacgccgac aacagcgtaa ccttcgcggc gtggtactcc       600
     cggtacgacg atctgttcgc ccaagacgct gcccgtctgc aggatgacgc caaggtccgg       660
     ctattgctgc gaaagctcgg ccttcccgag cacgaacgat acgtgagttt catactcccc       720
     gccgtcccca aggacttcag cttcgccgac accgttgaca cgctcaagag cctcttcggt       780
     gcgaaggaat cggtcgtgag caggcgctat cggtgcctcc aaatctcgaa gcagccaacc       840
     gaggatcacg tctcgtacgc ctgtagagtg aacaagcttt gcgtcgaatt cgacctaggc       900
     aaactcaccc aagatgagtt caaatgcctt gtttacgttt gcggattgaa gtcggggagc       960
     gacgccgaaa tccgtacgcg acttctttcc aagatcgagg agaacactaa cgtcacactg      1020
     cagcagctgt cagacgagtg tcagcgtcta ctaaacctac agcatgacaa cgccatgatc      1080
     gagacgccgt caacctccga cgtaaacaaa gtcgagcaac gattcgaccg caacaaaagc      1140
     aacaggcgcg accgagatca acaaccttac gctgccggca agtcaaaaag caagccgccg      1200
     cgtccgtgct ggttttgtgg agcggaccac tacgtccgcg actgcacctt ccgaaaccac      1260
     aagtgcgccg attgcggagt caccggacat cgcgagggct attgcagttc tgccaagccg      1320
     ctgaaaccct tcaaacgagg aggcccgagg gactcggtca gcagtaacgt ggtggttatc      1380
     aacgagtgca cggtacagaa gcgacggaga ttcgtttcgg ttgatttcgg cgggacaccg      1440
     atccggcttc aactggacac agcatccgac atcaccgtga tcagcaagga actgtggaac      1500
     gaagttggct gcccaaggtt atcaccgccc tccgttcgcg ctaaaacagc ttctgggacg      1560
     gaattgtcgc tgaacggcga gttccgctgc gacatcacca tcgccggaag cacccgcaac      1620
     gagctgatcc gcgtaaccga gaaaccactc cagctgcttg gctcggatct tgtggacagc      1680
     tttgggctag catccatccc gatggacagc tactgctgca acgtatccag cgttcccgac      1740
     ccggcgccgg cactcaagtc ggccttcccc aaggtgttca gcaaaaacct cggcttgtgc      1800
     accaaaacaa aggtgaagtt ggagctgaaa gaaaactgcc gaccggtttt ctgtcccaaa      1860
     cgtccggtgg cctacgcgat ggttgaggcc gtcgaccgcg aactggacag gttgcagcag      1920
     ctcaacatca tcactccgat cgactactct gagtgggccg ccccgattgt cgtcgtgcgc      1980
     aaggccaacg gctccatccg gatttgcgga gactactcca ccggcctcaa cgctgttctt      2040
     cagccacacc agtacccgct gccgcttccg gaggacatct tcgccaagct ggccaactgc      2100
     aaggtattta gccagatcga cctttctgat gctttcttgc aggttgaggt agacgaacag      2160
     gaccgccact tgctcacgat caacacccat cgtggcctct acctctacaa ccgccttgcg      2220
     cccggcgtca agaatgcccc cggcgcattc cagcagatca cgtccaccat gctggccgga      2280
     atcccagcag cgtcctgcta tctcgatgac gtcatcgtcg gcggcgcaac ccaagaagag      2340
     cacgatcgca acctcaaagc cgttctgcaa cgtattcaag actacggctt cacaattcgt      2400
     ctcgagaagt gctcgtttgg gaagactgag atccgctact tggggcacat catcgacagc      2460
     cgcgggctgc gaccagactc tgcgaagatc gaggccattg tcaacatgcc gcctcctact      2520
     gacgtgtctg gtgttcgatc cttcctgggc gcaataaatt actacgggaa gttcgtgcct      2580
     aacatgcgga tgctgcgcta cccaattgac aagctgctga aggaggatgc gaagtttgtg      2640
     tgggattcgg agtgccaaaa agcttttgag aagttcaagc aaatcctcac ctccggtctg      2700
     cttcttacac attacgaccc aaggcaggag attattgtct ctgctgacgc ctcatctgtt      2760
     ggactggggg cgacgatttc gcacaaattc cccgatggtt ctgtgaaggt ggtccaacac      2820
     gcatcgcgag cgctaacgaa ggcggagcag aactacagtc agccggatcg cgagggtttg      2880
     gccatcgtgt ttgcggttac aaagttccac aaaatgattt ttggtcggag atttttgctg      2940
     cagaccgacc acgcgccact acttcgcatc ttcgggtcaa aaaagggaat tccggtctac      3000
     acagcaaacc ggttgcaacg cttcgcactg aacctgctcc tctacgattt ctccatccag      3060
     tacgtctcca ccgacaagtt tggcgacgcc gacgtgctat ctcgtctgat caatcagcac      3120
     gtacgaccag aggaggacta cgttatcgcc agcgtccgcc tagaggagga catcaggtca      3180
     gtagccacgg agtcgattaa tgcgttgcct ctcagtttta gagccgttgc caaaagcacc      3240
     cagtccgatc cacaactccg caaaatctat cggtacgttc ttgagggttg gccaagagcg      3300
     aaagtcgctg atccggagat ccggcgctac caaacccgtg ccgactcgct caccgttgtg      3360
     gacgggtgca tcctgttcgc cgaacgacta gtcatccctg ctcagcatcg caagcggtgt      3420
     ctggagcagc tgcaccgagg ccatcctggg atggtgcgca tgaagcagat tgccaggagc      3480
     tacgtgtact ggcccagcct ggatgacgaa atcgtgggct acgtgaaagc atgccagcca      3540
     tgcgcctcgg tagcacggtc cccgccgcac tctgctcctg tgccatggcc gaaagcagct      3600
     ggcccgtggc aacggatcca tatcgatttt gcgggaccga tcaacggcga ctacttcctg      3660
     atagcagtgg actccttttc gaagtggcct gaagtagttc gcacgcagcg catctctgcc      3720
     ctcgcaacca tcgctatcct ccgccggatg ttttcccaac tcggcatgcc taccctcatc      3780
     gtgagcgaca acggaacgca gttcacgagt gccgaatttg cagagttttg cgcttcgaac      3840
     ggcatccacc acaccacgac cgccccgtac cacccgcagt ccaacgggca agcggaacga      3900
     ttcgtggaca ctttcaagcg tgccgtcaag aagatttcgg aggggagagg caccatcgaa      3960
     gaagctttag acatcttcct gttggcgtac cgcagtaccc caaaccgctg cgcacctgag      4020
     ggcaagtctc cagccgagat aatgttcggt cgcaaaatcc gaacctgtct cgaactactt      4080
     cgcccacctg ccgatcccga accgccccag aaggaagacc aacgtcgaag cttcgccaag      4140
     caagacctcg tgtacgctca agttcactcc ggcaacgcat ggaaatggac acctggagtc      4200
     atcctcgagc ggattggaag tgtgatgtac aacgtgcacg tcggcaacca acgcgtcatc      4260
     cgctcgcaca tcaaccaact gcgaagtcgc tccgagagcg gaccagctgc ttcactgtgt      4320
     gccaaaccga aagcgctgcc gttagacgtc ctactcggtg agtggaaact tccgcaaccg      4380
     tcgttggtcc ctgagctgcc accgttgagc ccgatgcagt tgacgccgcg tccgtcttct      4440
     ctcgagcttc cggaccctcc tgagacgcaa acgagcgcgt ccagtacacc acgcccgtca      4500
     accccagaat ctccggacca agttgagacg ccgccgtgtg cgtcctctac gccgcgtctt      4560
     ggatcgctgc ctccacaaga gagcggtgca acaccatctt cttcggctgc gtcgtcgttg      4620
     tcttcctcgt cttcatcaag tacgtcggag ccaaccatcg tgccgcagct ggtacctgaa      4680
     cttcggcgtt ccgataggaa tcgtagaccg cctgtaagat tcgactacta ccagctgtat      4740
     taagagggga ga                                                          4752
//
ID   Gypsy-39_CQ-LTR repbase;    DNA;    INV; 271 BP.
XX
AC   AAWU01034372;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_CQ_;
KW   Gypsy-39_CQ-I; Gypsy-39_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-271
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 458-458 (2011).
XX
DR   Genome; AAWU01034372; Positions   47518   47248.
XX
SQ   Sequence 271 BP; 52 A; 73 C; 69 G; 77 T; 0 other;
     tgttgaggac agagaaagtg cgcggagtgc ccccaccttc cgcgcgccgc tggctcacaa        60
     gtggctgcca gtctgccact gtgtgacgca gcacagcgcg ttcgatgttt tataagctgt       120
     cccgttttgt gttgtgccat cgtgccattc tacttccgtc tgcggacaag aataaacgtt       180
     ttaacttgta ctaagtctat tttatttgcg tacgttcgct agtctatttg cccgtcgcgg       240
     gtaatccaac gtccagcgtg cgtatacgac a                                      271
//
ID   Gypsy-39_DAn-I repbase;    DNA;    INV; 5632 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_DAn_;
KW   Gypsy-39_DAn-LTR; Gypsy-39_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5632
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 311-311 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4114-4593] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           448..1779
FT                 /product="Gypsy-39_DAn-I_1p"
FT                 /translation="MSDSESEDLVVQLSNLTISEAAERILQEKQSMDPQQM
FT                 QAIINAAVSAALQVQKQEFEEKLREVTDRFSAETVSAPDIAVYLPVAVTGD
FT                 VPCDEGLDAVKSLPEFDGSQGKYVSWRQAALASYESFRRFDGSSKHYQAVL
FT                 IIRNKIRGSADSVLSSFNTVLNFDAIINRLDFTYSDKRPLYLLEQELTTLR
FT                 QGQMSITQFYEELEKKLTLITNKTNMTYETDRARYMNDKYRADALRVFISG
FT                 LKRNLTDVLFAAQPRDLPSALAMAQEIEANHERHAFATQYARSVEEKHLRQ
FT                 AQSRPLQRTPDSNHEQILKKGWKNPYFTRDQGLQTVVDNRPLEKMDVDPTS
FT                 SKFRQSTNFQRSQDSAALHALDAQQQITHKRPMNSQRLSDFRRQRVNHLFE
FT                 EDKSGQAEECYNQIASDAVDDIDEEEGADYESDAVHFLGDLPCFRSSNEQ"
FT   CDS           2830..4356
FT                 /product="Gypsy-39_DAn-I_2p"
FT                 /translation="MRVSREKSHFFKESVEFLGFVVTKEGTRTSQDKVKAI
FT                 KEFKQPSNLFELRSFLGLASYYRCFIKDFASIARPLTDLLKGEGGRVSKYR
FT                 SKGISVNFDKAQLSAFDKLRNILASEDVVLQYPDFTRPFDLTTDASSFGIG
FT                 AVLSQGNRPITMISRTLKDRELNYATNERELLAIVWALDSLRHYLYGKSDI
FT                 NIFTDHQPLIFAVSDKNPNSKLKRWKDRVEESGAKVMYKPGKENCVADALS
FT                 RQGINALQSSADSDRATIHSEESSTLVIEATEKPLNCFRNQIILEEASTSN
FT                 KRLFTVFGTKTRHQIDFSDWEKLVDLVKDVVTPNVVNAIHCKLPVLARIQD
FT                 SLVRLFPATKFWYCKSWVADVVKPDEQKEILLAEHNRAHRAAQENIKQVLL
FT                 DYYFPKMGKMAAEIVLNCRICQKAKYNRHPLKQELGITPIPSRVGERLHMD
FT                 IFSTGGKYFLTAVDKFSKFAVVQPIASRAILDVKIPILQLVNLFPNVRSIY
FT                 CDNEASFNSETIR"
XX
SQ   Sequence 5632 BP; 1739 A; 1145 C; 1271 G; 1473 T; 4 other;
     ttatctggcg cccaacccag tcgaagaccc cgacaagatc tccaagcctc gaagacacga        60
     gggaaattaa aatcatctca aagctgatac cctaggacgg actgttckgg accgcgcaga       120
     aaactgcgaa aaataagaag ttaaactttt atagattcat gtaagtgaaa ccttttttat       180
     gaattgccaa aaacaaaaaa aaaaaagaaa caaaaatatt tatttttgaa aacagtgtcg       240
     gtattaaaat caagaagtta gagtaattta tttctttgtg tgtcgcggtg ttttttcttt       300
     cgaatcagta aaatctattt cgcggagaag agtacggtaa atagttaagc gcttagctta       360
     gcgcctagct tggcgactgt ctaatttttt tgagacttct ttttgtttgt tgctcgcttg       420
     cttgcgtttg atcttgatag cggttgtatg agcgattcag agtccgaaga cttggttgtt       480
     cagctaagta acctcactat atcagaagcc gccgaacgta tattacaaga aaaacaaagt       540
     atggatccac aacaaatgca ggcaatcata aatgcagcgg tttcggccgc attacaggtc       600
     cagaaacagg agtttgagga gaaattgaga gaggtcactg ataggtttag cgctgagaca       660
     gtatctgccc ctgatattgc agtatatttg cctgttgctg taaccggtga tgtgccttgt       720
     gatgaaggcc ttgatgcagt aaagtcattg ccagagtttg atgggtcaca gggaaagtat       780
     gtttcttggc ggcaggcagc actagcatca tatgagtcgt ttagacggtt cgacggtagt       840
     tccaaacatt atcaagctgt tctcataata cgtaacaaga ttaggggatc tgctgattct       900
     gtcctgtcat cctttaatac agttcttaat tttgacgcta ttataaaccg scttgacttc       960
     acttattccg ataagcgtcc attataccta ctcgagcagg agcttacgac actaaggcag      1020
     gggcaaatgt ctattacaca gttttatgag gagcttgaga agaagctgac actcattaca      1080
     aataagacca atatgacata tgagactgac cgtgcccgat atatgaacga taagtatagg      1140
     gccgatgcac tacgtgtatt tatttccggg ctgaagagga acttaaccga cgtactcttt      1200
     gctgctcagc ctagagactt gccatcagcc ttggcaatgg ctcaggaaat agaggcaaac      1260
     cacgagaggc acgcttttgc cacacagtat gccaggtccg tagaggagaa acaccttaga      1320
     caggcccaga gtcgtccatt acaaaggaca ccggattcca accacgaaca aatacttaaa      1380
     aaggggtgga aaaatccata ttttaccagg gatcaggggc tacaaacagt tgttgataat      1440
     aggccattag agaagatgga cgtagatcca acatcgtcga aattccgtca atcgacaaac      1500
     tttcagcgct ctcaggattc tgcggcgctg catgcgctcg atgcacagca acaaattaca      1560
     cacaagagac cgatgaactc tcaaaggtta tctgacttta ggcgtcaaag agttaatcat      1620
     ctgtttgaag aagataagag tggtcaagcc gaggaatgtt acaatcagat tgctagtgat      1680
     gcggtagatg acatagatga ggaagaagga gcagactatg agagtgacgc cgtgcatttt      1740
     ttaggggatc ttccctgctt ccgttcgtcc aacgaacagt agcggggaaa tcacgaaaat      1800
     tcctaataga cacgggggcc tccaaaagct acatcaagag agagattggg tggccaactt      1860
     caattcctgt tgattctcca tttacagtca agtcacttca tgggtttgaa aaaatagaac      1920
     acaaatgcca gttttatctt tttggtgtgg aaagcccttt cttcttatta cccggactta      1980
     aaacttttga cggcataatt ggccttgacc tgttagcgca agtaggagcg actattgatc      2040
     ttaaaagcaa ttctattaga tttaatgggg gatgtgagga tctgcacttt caaaaatgcg      2100
     ctcaggttaa ctttacgaag gtcgaagaca ttgtcgtgcc cccaatagtg caggaaagtt      2160
     ttcagcagat gatgtctaaa cactcggggg cctttgctga tccaaataag aagttaccgt      2220
     ttaacacaaa cgttgtagcg actattcgga cacaggataa cgagccagtg tattcaaagc      2280
     tgtacccgtt tccattgggt gctgccgatt ttgtcaatca ggagatcaaa gacttactaa      2340
     aaaatggcat tattcgacca tctcgatctc cctacaataa ccccatatgg gttgtaggta      2400
     aaaaaggcac ggacgcctcg ggatcaccta ataaacgctt agttgtcgat ttcaggaagc      2460
     ttaatttgaa aactattgcc gatagatacc caatgccgag tataaatatg atactgtcga      2520
     atctgggaaa ggccaaattt ttcactactc tcgaccttaa gtccggatat caccagatag      2580
     aacttgcgga attggatagg gaaaaaaacg tctttttcgg tcaacggagg caaatacgag      2640
     ttctgccgcc tacctttcgg actaaagaat gcatcaagca tttttcaaag ggcaatagac      2700
     gacgttctac gggagaaaat aggcagaatc tgttacgtct atgtggatga cgttattgtc      2760
     ttttcagaaa ctgaaaagtc tcatgttggc cacgttgcgg aggttctaaa gagcctgcag      2820
     gacgccaaca tgcgagtgtc cagggagaag tcgcattttt ttaaagaaag tgtcgaattc      2880
     cttggttttg ttgtgacaaa ggagggtact aggacaagcc aggacaaggt aaaagccatc      2940
     aaggagttca aacagccaag taatttgttc gagctgagat cgttcttggg cttagcaagt      3000
     tactatcggt gcttcatcaa agatttcgca tcaattgcga gacctttgac agatttactg      3060
     aagggtgaag gtggcagggt cagcaaatac cggtcaaagg gcatttcggt gaactttgat      3120
     aaggcccagt taagcgcatt tgacaagctt agaaatatcc ttgcttcaga ggacgtagtc      3180
     cttcaatacc cagacttcac gcgacctttt gatttgacaa ctgatgcttc atcctttggc      3240
     ataggtgcag tcttgtctca gggaaatagg cctataacaa tgatatccag aacgctgaaa      3300
     gatagggaac ttaattatgc cacgaacgaa agggagctac ttgcaattgt atgggccttg      3360
     gatagtcttc gtcactacct ctatgggaaa agtgacataa acatatttac ggaccatcag      3420
     ccccttatat ttgcggtctc tgataagaat cctaattcaa aactcaagcg ttggaaggac      3480
     cgcgttgaag aaagtggtgc aaaggtcatg tataaaccgg ggaaagaaaa ctgtgtggcg      3540
     gacgctttgt cgcggcaagg tattaacgct ttgcaaagct cagcggattc agatcgagcc      3600
     actattcaca gtgaagaatc atctaccctt gtcattgagg ccacggaaaa gccacttaac      3660
     tgctttagaa accagatcat attggaggag gcgtccacgt caaataaacg attatttact      3720
     gtgtttggta ctaagactcg ccatcaaatt gatttctccg attgggagaa attagtggac      3780
     ttggtgaagg acgtagtaac gcccaacgta gttaatgcca tacattgtaa gctcccagtc      3840
     ttggcacgta ttcaggatag tctggttcgg ctcttcccgg ccactaagtt ttggtattgc      3900
     aagtcttggg tggctgacgt cgttaaaccg gacgagcaaa aagaaatact actcgcggag      3960
     cataacaggg ctcacagagc tgctcaggag aatattaaac aagtgctgct tgactattat      4020
     tttccaaaaa tgggtaaaat ggcggccgag attgttctta attgcaggat ttgtcagaaa      4080
     gctaaatata ataggcaccc actaaagcag gaattaggaa ttaccccgat accatcgcgg      4140
     gtgggagaga ggctgcacat ggacattttc tcgacagggg gaaagtactt tctcactgcc      4200
     gtcgataaat tcagtaagtt tgcggtagtc cagccaatag cgtcacgtgc tatattagat      4260
     gtgaaaatcc caatccttca actggtaaat cttttcccta acgttagatc gatttattgc      4320
     gataatgagg catcgtttaa ctccgaaact atacgagsca tgctgaaaaa tcagtacgat      4380
     atagatatag caaatgcccc acctttacac agtacgtcaa acggacaggt ggaaagattc      4440
     cacagtactc ttatagaaat tgccaggtgt ctgaaattgg aaaggaaaat agacgatgtc      4500
     gtgcaattat tccttcaggc gaccatagag tacaataggt catttcactc tgtcactaat      4560
     aagaaacctg ctgagatcat ccatgctagt gctgaccttg ccccggatat aattatgaac      4620
     cttgaacggg cacaacagga gcagttaagt cggaacaatc cagctcggca gaatagggta      4680
     tttgacgtag gcgagaaagt tttggtaaaa accaacaaga gattggggga taaacttacg      4740
     cctctgtatg ccgagaatag agtcgatgcc gatattggga caacagtcct aattaaaggg      4800
     agggtggtcc ataaggacaa tattcgataa ggctcctaaa aaagaaaaaa attgtattcc      4860
     taggctcacc gtaccaaatt gtgttaggta ccccaaactc ttcgaactag caaaggtaga      4920
     gtcttagcat cgatttcgaa gtgcaggccc agaaattcgc tcatacaaca attgtcaatg      4980
     aaagaatcaa ggaaacaacg agttagggaa tcgaaaattg tcgtttatgc cgtctctttt      5040
     ccccgaaagc gttaaatcat aaatttaaat tgaaaatatc gaaactgccc acactctttc      5100
     aaaggtaaat gttataaaca atttaaaggt gacactaaca tcccacaggc gattctgaaa      5160
     gagggtttca caaaggttaa tactagctag taagaaatta ttgaattttg taaaattaat      5220
     atttagtttg tatcgtagat aataatattt tccaatcgca cataaacgaa agatatcaca      5280
     cgctgccacg tcatgggccg cgattaacca tttgcagaga ctcwacgatc atccgtgcat      5340
     gctcgccacc gcaacgaaat gctctcagac tcaactccct tttaagcctg tccctttttt      5400
     cactaaacga aaaaaagcct gcagcatata acggagtcgc aattgcttac aaccaaatgc      5460
     cacctgcagc agcgttaaac tgtttcgcgt cctgcgtatt gataaagatt aagatttatc      5520
     aggcttactc acaggcggcg aagcaaagcc tcgatagtgg tgaatccttc cttgctaaca      5580
     tggatatggc cgaggacgtc cattttttaa aaagaaggag agtagttaac aa              5632
//
ID   Gypsy-39_DAn-LTR repbase;    DNA;    INV; 707 BP.
XX
AC   .
XX
DT   28-OCT-2011 (Rel. 17.03, Created)
DT   28-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_DAn_;
KW   Gypsy-39_DAn-LTR; Gypsy-39_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-707
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 312-312 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 707 BP; 164 A; 202 C; 185 G; 156 T; 0 other;
     tgcaccggtg atctgagctt agagcggacg acggacggca cacgaagtct tacgacgggc        60
     gctggtcggc ggccgtgatc tgtgcgagtt aggtttttga ttaagctttt ttcttaagtt       120
     agtcagttct gggctgacaa ccgaataata aaggcaccat atctgagacg ggtcttttca       180
     tctttgtcaa ccgccgcgac agtatagctg aagctaagac cctgctatca gcttactggg       240
     agaagttcag cggcatcatc atcactgatc ttggccacca cctggtctgg atcggtgctc       300
     tgcagcgcta cgcgactgta gaggcacctg acgagtgacc ggccgttgtg ggcagccact       360
     tgccccaacg gtacaccaga gccaacaagt ccgtgagcag cacgtgccac ggcgtaacct       420
     cctgcaagac ctgtgcaggc gggagatatt gcgggcatct ccgttgccgc attatcccac       480
     acctttgtcg taacagctga agctaagacc ctgctatcag caccatcacc attgatcgtg       540
     gccaccacct ggacctgatc cgcactctgc atcactctac agttgcagag gcatccaaca       600
     tagtgaccga tcgttgcggg cagcaacgtt ataaccataa ccccctgcaa gacccgtgcg       660
     ggtggagaat attgtgggtg aacacgccgc cacagtatta cctaaca                     707
//
ID   Gypsy-39_HeAr-I repbase;    DNA;    INV; 4271 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4271
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5586-5586 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           191..886
FT                 /product="Gypsy-39_HeAr-I_1p"
FT                 /translation="MGDEAYELLTNLTSPEKPCEKTYMSVVKILTDHLHPS
FT                 PSFMAERYRFRQRRQNEGESVLQYISELKKLSKYCEFKAVLEENLRDQLVC
FT                 GLRNESIRQRLFTEVDLHYSNAVKISCAMEAAERDAAAVEQTVENSSGASG
FT                 GGEGATSALHAVTWSGAVSAGRHASRNVRSRLLPTRRAGNVRYAERRITRA
FT                 KIVDTSVLSAVGVEDTYAEFVRRVQEMNGQECDGTPTTWWRT"
FT   CDS           616..4173
FT                 /product="Gypsy-39_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GSYERAACGDVVRGGQRRQARVSERTFKTTADEASGK
FT                 CSVCGATDHQSEDCRYKRFICGRCRGHLRRVCPTRSGDERSGVRRDTNNVV
FT                 AHLAKDQQLLPGESGEDEPPSSDEESWGVEELHQLSLNDYRPVSLTIWVDA
FT                 TPLRMEIDTGSSVSCISENMYTXLFTHRSLRKSNLEFRFYDGTVIKPIGVI
FT                 KPLVKYGVNCKYLELFVIRGGTTSLLGRQWLAELDIKIPLYRNDLFTIKTD
FT                 YGMFDNNRLTQLLCRCKVLFADGLGRFTGGKARLRVREGAIPVFCRARPIP
FT                 YALRERVEAELDGMLRAGVIEPVDSSDWATPLVPVRKADGGLRICADYKLT
FT                 LNPVLVVDKYPLPRINDLLVKLTGAKVFTKLDLTQAYNQIELEDPDNYTVI
FT                 NTHXGLFXYKRLVFGLSSSPGIFQRIMANLFNDIPNVEVFLDDIIIGSPNV
FT                 SEHLVTLEKVLGRLLKNGMKLEESKCLFMASEVKYLGYIISAEGVKVDPEK
FT                 VEGILNIPRPQNITDLRAFLGTINYYAKFVKNLSTILAPLYNLLKKDVIWE
FT                 WNRGCETAFKKIKSILISADVLAHYEPDKPLFLTCDASARGIGGVLTQMXE
FT                 VVEDGVAAARERPVVYISRALNDAEKHYSQIEREALAIVFCFEKLHQYLYG
FT                 RRFTLRTDHKPLVTIFGPKQGIPSMTASRIQRWAIKLSAYTYDIEYVTSKQ
FT                 NGADGLSRLPALVASTNNNRIPEQTHLHFAQNSMLLDYNEIKKQTSRDQFL
FT                 SRILTYVRDVWPVNMEILALKPYFNRKAELYEELGCVMWGHRVVIPSACRY
FT                 KVLLDLHEAHMGIVKTKAFARSYVWWPGMDEEIEKMCQSCRVCAAESEAPA
FT                 RHTPCPWPWPDKPWARVHVDFLGPIKGRIFLVLVDARTKWLEVSQVPSTAA
FT                 SNTIGVLSDVFARFGLPRQIVSDNGPPFTSYEFSQFLRSNGIKHIFTAPYH
FT                 PASNGAAENAVRTIKRVIKKAIRENLSIQLFLNTFLLHYRNTEHCSTGETP
FT                 ASLMLGRRLRTKLDALRPNRENKVRDAQERQKEQGASGGRELSPGDEVWLR
FT                 QFTGQDRWLPGRVVDRMGATDYKIMDTSGRVVHRHVDQLKKRLRSPLICPY
FT                 SPLGEGSNAADAVQDRRVISQGSHRTEAPAGDSDHDHFEDCLDQPVQGEIL
FT                 PAMPSPEPTQSRPVRXCRVQNPVNYKI"
XX
SQ   Sequence 4271 BP; 1234 A; 815 C; 1101 G; 1113 T; 8 other;
     gtggcgacga ggataaacgg gcctattaaa caaaatagca cwatactttg gaggtcacca        60
     tgtcgatcgg aaaaatgtcc gaatttaatg tgaggtcagg caatttcacc tcatacgtag       120
     aacgcctgga aatgttttta aggtaaataa aataaaggag gaattatggc tgcctacttt       180
     aatagcagta atgggcgatg aagcctatga gttgcttact aatttgacga gcccggaaaa       240
     gccgtgtgaa aaaacatata tgtcagtggt aaaaattttg acagatcacc tccatccaag       300
     tccatcgttc atggcggaaa gatatcgttt ccgccaaaga cgtcaaaatg aaggtgaatc       360
     tgttttacaa tacatatcgg aattaaaaaa actttcgaaa tattgcgaat ttaaggccgt       420
     gttagaagaa aatttacggg accagctggt ttgcggacta aggaatgagt cgataaggca       480
     aagattgttt acggaagtgg atttgcacta cagtaacgcc gtaaaaattt catgcgctat       540
     ggaagcggcg gaacgtgatg cagcagccgt ggaacaaaca gtcgagaaca gcagcggagc       600
     tagcggcggc ggtgagggag ctacgagcgc gctgcatgcg gtgacgtggt ccggggcggt       660
     cagcgcaggc aggcacgcgt ctcggaacgt acgttcaaga ctactgccga cgaggcgagc       720
     gggaaatgtt cggtatgcgg agcgacggat caccagagcg aagattgtag atacaagcgt       780
     tttatctgcg gtaggtgtag aggacaccta cgcagagttt gtccgacgcg ttcaggagat       840
     gaacggtcag gagtgcgacg ggacaccaac aacgtggtgg cgcacttagc aaaagatcag       900
     cagttacttc caggagagtc gggagaggat gaacccccgt cgtcagatga agaaagctgg       960
     ggggtagagg agttgcatca actcagcttg aacgattata gaccggtgag tttaaccata      1020
     tgggtggatg ctaccccatt acggatggaa attgatactg ggtcgtcagt atcatgtata      1080
     agcgaaaata tgtatacgam attgtttact cataggtcgc taagaaagtc taacttagag      1140
     tttagatttt atgatggtac ggttattaaa cctatagggg taattaagcc acttgtgaag      1200
     tatggagtta attgcaaata cttagagttg tttgtaatac ggggtggtac tacatctctt      1260
     ttaggccgac aatggctagc agaactggat attaaaatac cgttgtaccg caatgatctg      1320
     ttcaccataa aaacagacta cgggatgttc gataataatc gactgacgca attactttgc      1380
     agatgtaagg ttttgtttgc ggatggcttg ggccggttca cgggaggcaa ggcacggcta      1440
     cgggtacgcg aaggtgcgat accagtgttc tgccgcgcac gaccaattcc gtacgcactg      1500
     cgggagcgcg tggaggcgga gttggatggt atgttgcgcg ccggcgtcat cgaacctgtm      1560
     gacagctcag actgggctac cccgctggta ccggtacgta aggctgatgg tggactccgt      1620
     atttgtgctg actacaaatt aactttaaat ccagttttag tagttgacaa atatccttta      1680
     ccgcgtatta acgacttact ggttaagtta accggtgcaa aggtattcac aaagttagat      1740
     ttgacacaag cctataatca aattgaatta gaggatccag ataactacac tgttattaat      1800
     acgcacakgg gcctttttaw gtataaaagg ttagtttttg gcttgtcctc gagtccgggt      1860
     atattccaaa ggattatggc gaatcttttc aatgatattc ctaatgtaga ggttttcctt      1920
     gatgatataa ttattggatc gcctaacgtc agcgagcatt tagttacttt agagaaggta      1980
     ttaggaaggt tacttaagaa cggaatgaaa cttgaggaaa gtaagtgttt gttcatggcg      2040
     agcgaggtta agtatttagg ctatataatt tccgccgagg gagttaaagt tgacccggaa      2100
     aaagtagaag gtatattaaa cataccacgt ccgcaaaata tcacagattt gagagccttt      2160
     ttgggtacaa taaattacta tgccaagttc gtcaaaaatt tgagtacaat actggcgcct      2220
     ctgtataatt tgcttaagaa agacgtgatc tgggaatgga acagagggtg tgagaccgct      2280
     tttaaaaaaa ttaaatctat tttgattagt gccgacgtct tagctcatta cgaacccgat      2340
     aaaccgttgt ttttaacgtg tgatgcgagt gccagaggca taggcggcgt gctaacgcag      2400
     atgkgcgaag tggtggagga tggcgtggcc gcagcgcggg agcgacccgt cgtatatatt      2460
     tcgcgtgcac ttaacgacgc cgagaaacat tactcacaaa ttgagcgtga ggctttggcc      2520
     attgtgtttt gctttgaaaa attacatcaa tacttatatg gtaggcgttt tactttacgt      2580
     acggatcaca agcctctagt cacaattttt gggcccaaac agggcatacc atcgatgact      2640
     gccagtagaa tccaaaggtg ggcaatcaag ttatcagcct acacatatga cattgaatat      2700
     gttacttcaa agcagaacgg ggctgatggg ctatcgcgac tgcccgcgct tgttgcgtct      2760
     acaaataata acagaattcc ggaacaaaca cacttgcatt ttgctcaaaa ttccatgcta      2820
     ttagattaca atgaaattaa aaaacaaacc agtagggatc aattcttaag ccgaatttta      2880
     acttatgtac gagacgtttg gcctgttaat atggaaatat tagcactaaa accatatttt      2940
     aatcgcaaag cggagctgta tgaagaatta ggttgtgtga tgtggggaca tagagttgtc      3000
     ataccgtcag cctgccgata taaagtttta ttggacttgc atgaggcaca catgggcatt      3060
     gtgaaaacta aagccttcgc ccgaagctac gtttggtggc ctggcatgga cgaagaaatt      3120
     gaaaagatgt gccagagctg tcgagtttgt gccgcggaaa gtgaggcgcc agctcgacac      3180
     acaccttgtc cttggccgtg gcctgacaaa ccgtgggccc gcgtgcatgt tgatttctta      3240
     gggcctatca aaggacgaat atttttggta ctagttgatg ctcgcactaa gtggcttgaa      3300
     gttagtcaag tacctagtac agcggccagt aacactatcg gcgttttgag cgatgtcttt      3360
     gctcgtttcg gcctaccaag acaaatcgtt tcagataatg gtcctccctt cacgagttat      3420
     gagttttctc aatttctgcg tagtaacggc ataaaacata tttttacagc tccttatcat      3480
     cctgcttcaa acggagcagc agaaaatgct gttcgtacga ttaaaagggt tattaaaaaa      3540
     gcaattagag aaaatttgag cattcagtta ttcttaaaca cgtttttatt gcattataga      3600
     aacaccgaac actgttcgac aggtgaaaca cccgcatctc ttatgttagg gcgtaggtta      3660
     cgcacaaaat tagacgcttt acggccgaat agggaaaata aggttaggga tgctcaggaa      3720
     cgccaaaagg agcagggagc aagtgggggt cgtgaactta gtccggggga tgaggtctgg      3780
     ctacgccagt ttacaggaca ggatagatgg ctgccgggga gagtggtaga tagaatggga      3840
     gccacggact ataagataat ggatacttct ggcagggtag tacatagaca tgtagatcag      3900
     ttgaagaaaa gattacggag tccactaatc tgtccttaca gcccgctagg cgaagggtct      3960
     aatgcggccg acgcagttca ggatcggaga gtcatcagtc agggcagcca tcggacagaa      4020
     gctccggccg gggacagtga tcatgatcat ttcgaagatt gccttgatca gcccgttcag      4080
     ggagaaatat tacccgccat gccttctcct gagccgaccc aatctcgtcc ggttcgcmaa      4140
     tgccgagtcc agaacccggt caattataaa atttaatttg agktttattt cgttatttat      4200
     tatttgttat ttgtatagtt gtttagttag atgatgttag ctacaccaga gttgttaact      4260
     aagggtgagg g                                                           4271
//
ID   Gypsy-39_HeAr-LTR repbase;    DNA;    INV; 118 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-118
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5616-5616 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 118 BP; 26 A; 19 C; 24 G; 48 T; 1 other;
     tgtgatgtac tctatggcat tcggtgtctg tgtattttga tagttgtatt gtcattctgg        60
     tttttcaata aaagtcgcat agctggatat cttggacctt ttattcgcaa acacmtca         118
//
ID   Gypsy-39_LMi-I repbase;    DNA;    INV; 4264 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4264
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(662..1255,1213..1671,1541..2392,2526..4211)
FT                 /product="Gypsy-39_LMi-I_1p"
FT                 /translation="MILVHSPDDALRADLLKLKDPSLDACLPIIRAFEQSV
FT                 RSASALHDQSQVFAAKPTRRTPPPARPDSHMTYSAQPPKRRYQQLPSCSQC
FT                 FVSHPRQECRFRRAKCSACGKTGHKADVCQASKMAVDYAQVEHLDSDTAPG
FT                 DDNFPEVAYVRAVFPPNTKCPLTVSIAGVPLRLQIDTGSSATIIDWRSYQQ
FT                 VGTPSQAGLALVPTGRHPLSGRLISRCVPTAMMWYVSRVSSQRRSSTAPAP
FT                 FRHVSWWLTRLGQLIYWVWTFSEPWVWRSMTRPPPSILLVCPTSWMTYLTV
FT                 LAQCFLRLTQASTILKLTSHCFLQRSPNSSRHEMSLLLFGTSCASNSSVYK
FT                 TRAFLPQFSSHHTASFSGPQILQGTKCPFCSSGQAAPRTPAFTRQGRSYPS
FT                 SNSLWATPIVLIEKPNGGLRVCGDFSNTINAQSVVDSYPIPKVEDILARLA
FT                 GGKIFAKIDLKDAYLQLPVDADSRQKLVINTPFGLYQYNRLPFGIASAPAI
FT                 FQRYLETLIKEVPRAANYLDDIIVAGTDAADLAANLTTLFSRLQAANLRCN
FT                 KDKCSFFVEQVEYLGHILSAAGIRPTPQYVEAIQLLPPPKDVSQLKSVLGQ
FT                 LNYYWKFIPRVAAIAEPLHRLLRKKSSGIGPQHVPGFKGPLLLSLKTLSSA
FT                 QRNYSQVEKEALAIIFGIKKFHDYLYGRPFTLITDHKPLIPLFRASASVPT
FT                 KTAHRLQRWALFLSAYSYDIKYRPTTHHANADILSRLPVGQDPEFDKDPEV
FT                 CFHLDTAAEDALAHLPLDASLVARHSADDPVLKELRRLVQQGWPPDHRRIT
FT                 NPEVRAYWHQRHELSTLRGVLLLQGENQRTRVVIPASLQKRVLDLLHEGHW
FT                 GVVLTKRLARQHIYWRGLDAAITHMVAACVTCRSKQAAPPRRFFPWPQTAT
FT                 PWSRLHLDFAGPFLGHTWLITIDAGTGFPYVSRMAGTSSRHTIQALATIFS
FT                 IEGLPETIVTDNGPQFTSAEFRSFCDTNGIQLLHTAPFHPASNGLAERFVR
FT                 TFKQQLAKLAHHHPLEDAVTLFLASYRSTPQNGASPAEKLHGRAHRSKLSI
FT                 IHPHNSQPHSHSPVRHRYALQDPVWALVFFQRTTAVAPCDDHQTAWQSHGG
FT                 SHPRLGRRLPQACKPVANTCLSHFACRQLTDVACSGDRRWAAAPQEVQRPV
FT                 TMPPPLPPADQPTLQAPIPMDVDMCPATRSQPCFPMST"
XX
SQ   Sequence 4264 BP; 905 A; 1337 C; 1007 G; 1013 T; 2 other;
     gtggcgacga ggtttttttt tcttttttgc gtgtgcctat cttgtgcgac aaccgccgta        60
     ggtagttttt ttttctctgt ttgtgcaaga tgactgagca agttgatgtg atttcccaga       120
     taatgtgcac cctgcaacat atgcagcagg ccttcgtggc cttgactgag agggtgaccg       180
     ctctggccgt gackccgacg gacgtctcca gccggatctc ccgcatcgac accatggtca       240
     agaacgcccg tccagcggcc ccggcgttcc caccgttcga ccgcaagctg gagccatggg       300
     ccaactacgt cgcacgactg gagcaacact tcttggtcca tggcatcgcc agtagcgagc       360
     agcagcgcgc attcttgccg cgtacgccgg tccagagatc taccagctgg tgcaacacct       420
     caatccggag acggaacccc atgccctccc atatgatcag gtgaggtcca gcctttctga       480
     ttattttgac tcgcaaattc acgtcgcggc tgcccgccat aagtttttca actgccaaaa       540
     actggctggg caatcttata gggagtggat cgtcagttta caaggcctct ccagggactg       600
     tcgttttgtg tgcctcaacc cgacttgcca aagatcctat gcagctagtt tagtgcggga       660
     catgatcctg gttcattctc cagatgatgc tctacgtgca gacctgttga aattgaagga       720
     cccttccttg gacgcatgtt tgccgatcat ccgcgcattt gaacagtcag tacgctcagc       780
     ttcggcactg cacgatcagt ctcaggtttt tgcagcaaag cccacgcgcc ggaccccacc       840
     ccccgcacga ccggactcgc atatgacata ctcggcccag ccccccaagc gccggtacca       900
     gcagctcccc tcctgtagcc agtgttttgt gtcacacccc cggcaggagt gtcgttttcg       960
     gcgggctaaa tgttccgcct gcggtaaaac tggtcacaag gccgacgtct gtcaggcatc      1020
     caaaatggcg gtagactatg ctcaggttga gcacctagac agtgacaccg cgcctggcga      1080
     cgataatttt ccagaggttg cttatgtgag ggcagttttt ccccccaaca ccaagtgtcc      1140
     tctcacagtc tccattgcag gggtgcccct ccgattgcag atagatacag ggtcatcggc      1200
     taccatcatt gattggcgct cgtaccaaca ggtaggcacc ccctctcagg ccggttgatt      1260
     tccagatgcg ttcctacagc aatgatgtgg tacgtttcga gggtcagttc acagcgccgg      1320
     tccagtacgg cacccgctcc attcaggcac gtatcttggt ggttaacacg cctggggcag      1380
     ttaatctatt gggtatggac cttttcggag ccctgggttt ggagatccat gactcggccc      1440
     ccaccgtcca ttctcttggt gtgtccaacc tcctggatga cttatttaac cgttttagct      1500
     cagtgttttc tccgcctgac acaggcgtca acaattttga agctcacatc acactgcttc      1560
     cttcagcggt ccccaaattc ttcaaggcac gaaatgtccc ttttgctctt cgggacaagc      1620
     tgcgcctcga actccagcgt ttacaagaca agggcgttct taccccagtt ctaacagtct      1680
     gtgggccacg cctatagttc tgatcgagaa acccaatggt ggtctgcgag tctgtggcga      1740
     tttttctaat accatcaatg cccaatcggt agtggactct tatcctattc ccaaagtgga      1800
     ggacatcctg gctcgtttgg cagggggcaa gatcttcgca aaaattgacc tcaaagatgc      1860
     ttacctccag cttccagtcg atgccgattc ccgacaaaag ttggtcataa atacaccttt      1920
     tggtctatat caatacaacc gcctcccttt cggcattgcc agcgccccgg ccatatttca      1980
     gcgttatctg gagacgctca tcaaagaggt gccccgggca gcaaattacc tagatgatat      2040
     cattgttgct ggcactgatg cggcggatct agccgccaat cttactacac tgttctctcg      2100
     ccttcaggcg gctaacctcc ggtgcaacaa ggacaagtgc agttttttcg tggaacaagt      2160
     cgaatacttg gggcatatcc tcagtgcagc cggtattcgc cccaccccac aatatgtgga      2220
     ggcgatccaa cttctgcccc ctcctaagga tgtgagccag ctcaaatctg tcttgggcca      2280
     actaaattat tattggaaat ttattccccg tgtggcggcc atcgccgaac ccctccaccg      2340
     cctcctccga aaaaagtcaa gtgggattgg tccccagcat gtgccaggct tttgaggccc      2400
     tcaaacgggc ccttcttcgc cccacatgcc tcactgcata cgacccttct ttcccctcat      2460
     tctagcagct gatgcttctg actatggcat aggggccatt ttgtcacaca tggtcaacgg      2520
     aatagaaagg cccattgctt ttgtctctta agaccctgtc atcagcacaa cgcaattata      2580
     gccaggtgga aaaggaggca ctggccatca tatttgggat aaaaaaattc catgactatc      2640
     tctatgggag accttttacc ttgattaccg accacaagcc tctgatcccc ctttttaggg      2700
     cctctgcttc agtccccact aaaacagccc atcgcctaca gcgctgggcc cttttcttgt      2760
     ctgcctattc gtatgacata aaatatcgcc ccaccactca tcatgcaaat gccgacatac      2820
     tgtctcgctt accagttggt caggacccag aattcgacaa ggaccccgag gtgtgttttc      2880
     acttggacac tgcagcggaa gacgcccttg cccacctgcc attggatgcc tcactggtgg      2940
     cgcgccactc tgcagacgac ccagttctta aggaactccg acgcttggtc caacaaggtt      3000
     ggcctcccga ccatcgccgg atcaccaatc ctgaagtacg ggcatactgg caccagcgcc      3060
     atgaattgtc gacgctgcgt ggagttctct tgctccaagg tgaaaaccaa cgtacgcggg      3120
     ttgtgattcc tgcatcactg cagaagagag tgttggacct gctccacgaa ggccactggg      3180
     gcgtggtcct caccaaacgc ctggctcggc agcacatcta ctggcgaggt ctcgatgcag      3240
     ccatcaccca catggtcgcc gcgtgtgtca cctgcagaag caagcaggcg gccccacccc      3300
     gccgtttctt cccctggcca cagacggcaa caccatggtc ccgtctgcat ctggattttg      3360
     ccggcccatt cctgggacat acatggctca tcacaatcga cgctggtaca ggtttcccat      3420
     atgtctcccg tatggccggt acctcttccc gtcacaccat ccaagccttg gccactatat      3480
     tttccataga gggccttccg gagactattg tcacagacaa cgggccccaa ttcacctctg      3540
     ctgagttccg ctccttttgt gacacaaatg gcatacagct cctccatacg gcccctttcc      3600
     atcctgcctc caacggcctc gctgaacgtt ttgttcgtac ctttaaacag caattagcca      3660
     aactcgccca tcaccatcct ctagaggacg ccgtcaccct tttcctggca tcctatcgtt      3720
     ccacacctca gaatggtgcc tctccagctg agaaattgca tggacgagct cacagatcca      3780
     aactctctat catccatcca cataattccc agccccattc acactctcca gtcaggcacc      3840
     gatatgctct gcaggatccc gtctgggccc tcgttttttt ccagaggacg acggcagtgg      3900
     ctccctgcga cgatcaccaa actgcttggc agagccatgg tggaagtcac cctcgcctcg      3960
     ggcggcgtct gccgcaagca tgtaaaccag ttgcgaacac gtgtctcagc cacttcgcat      4020
     gcagacagct cacagacgtt gcctgttccg gagacagacg atgggccgcc gccccccagg      4080
     aggtccagcg ccccgtcacc atgccgccac cactcccgcc ggckgatcaa cccacactcc      4140
     aggcaccaat ccccatggac gtcgacatgt gcccagcgac gcggagccag ccctgctttc      4200
     cgatgtcgac atgagctgtt ctctctcagc cccgacctgg ggcagggggg ggggagggat      4260
     gtcc                                                                   4264
//
ID   Gypsy-39_LMi-LTR repbase;    DNA;    INV; 564 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-564
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 564 BP; 123 A; 169 C; 161 G; 110 T; 1 other;
     tgtccgccta ctacagcggc aacacgcacg acacgagggc gtcgcgggtt gccgggcagc        60
     taggcgaaca atccacgggc ccacacgagc tcgcaggcgg cgctagcagc acgcccagag       120
     ggcgcgtgaa acgggaccta ctcccgtccg ccgtacacgt gatcgcggag ttagggcagg       180
     cagatatcct tccgcgtgca tatttaagga cgagcaccgc ctagccacgg cagtcggacg       240
     ccagccaagg gacctgtcac gcctccgccc tccgacgtcg ccgccgccgc tgctcagccg       300
     cccagccgcg ccgccaagga cgccatcggg ttccgcagca ccgccgccga ctgtggggac       360
     ggacgaactg taggtcgcca cactgacgtc cgggattgag gaacgggatt gttaaagtat       420
     tggaactgca aaccagtgga cctttaattt tgtgtatttt tgttctggtg tatcatcata       480
     cagtcagaga ctgacttttt tgttgtattc taataaactg tattggagsa atacacgagt       540
     gacattctta cagtagattc atca                                              564
//
ID   Gypsy-39_MoPha-I repbase;    DNA;    INV; 4694 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4694
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1117-1117 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1004
FT                 /product="Gypsy-39_MoPha-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MPKTWVYLASKADLTKTLESLGLDTTGTLDDLRRRAS
FT                 DYVNRHPERFTDVLSLPGPAMEPPQINVTAVDPEPGAEAHAKTMNQIRKWG
FT                 CHFDGKDPLSFLERVDELKDEYGYGDHQMLRGLPELLRGDALLWYRNNRTT
FT                 WGTWDEFVTEFRDYYLPRRYFSQLRRDIQTRVQKTDEPYRKYATELLTMMR
FT                 RAGGYAAAEQIDILYENMEPRYKLYVRRGDIHRVNDLLRGAEEFETLDSQC
FT                 RARQTAPKPSAAAATAYDKTECCWRCKQRGHTRFDCRRIPRKFCSQCGKDG
FT                 VLTRDCHPPPGNAAGAEGNAVAPRPSE"
FT   CDS           917..4033
FT                 /product="Gypsy-39_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GRRTYARLSPSAGKRRRSRGKRGRAPPLRITYLPRPH
FT                 LHIRVHHLSFLALLDTGSEASFVSPQTAAALRGIGLVIRPATGNVHLANQT
FT                 VTQISGCITLPVTIGGRKVWHEMQIMPHLDADVLLGVDFWARLRQAIPPPP
FT                 IRRDPATTPPHISGTSYGGLAPTEREKLREFLEHELPLFDDIRGPTDRVQH
FT                 TIRVRNNAPIKQRYRPRNPAMQAIIDAEVEEMLRDGVIEPSRSAWSSPIVI
FT                 VRKKDGKPRFCVDFRRVNEVTEPDAYPLPQITATLDKLRGARYLTTLDLRS
FT                 GYWQVPLAPESRPVTAFTVPGKGLFQFRVMPFGLHSAPATFQRLLDAVLGP
FT                 ELEPRVFVYLDDIIVVTSSLEEHLETLREVFRRLREARLRLNPEKCKFGVN
FT                 RLTYLGHVVDRDGIRTDPEKTDAIAKWEVPTTVRQVRRFLGVASWYRRFVR
FT                 DFAAISAPLTQLTRKNVKWRWGTEQQTAFDSLKNTLTSAPVLACPDFTRQF
FT                 VVQTDASTSGLGAVLTQDFPEGERVIAYASRTLNAAERNYSATELECLAVI
FT                 WGVRKFRCYLEGYRFRVVTDHQSLRWLRTLDSPTGRLGRWAFELQQYNFEV
FT                 KYRKGALNRVADALSRQTAVSTITRPKCPWYRRMWQAVKKAPRDVPDYRIE
FT                 KGKLKKHVLHTLNFKEIPPESQWKHCVPTDERTEILRRYHDQPTAGHLGIA
FT                 KTIARVAEHYYWPGMFRYIARYVRQCPECLAHKPAQTRPAGLLHPTPVIRP
FT                 WQQVAIDLVGPLPRTARGHTWALTMQDRFTKWLEVRVLRRASANNIVDKVT
FT                 EAIILRHGCPEEILSDNGTQLRSTQFEHLLRKNGIRHRLTPAYAPHCNPVE
FT                 RTNRVLKTMIAQYLRRNHRTWDEHVSELQFAYNTATHEATGYTPAFLIYGR
FT                 ELRRPTEPPAETERGPPHALQRRLRDAYEVVEIQNARAFQKQERHYNLRRR
FT                 DWQPKAGEWVWKRDHPLSKRADAFNAKLAPKFIGPLEVRRIISPVIVDLRS
FT                 RGGKWYRHVHVQDLRATDNQRHDDDDTSTDDEQ"
FT   CDS           4006..4653
FT                 /product="Gypsy-39_MoPha-I_3p"
FT                 /translation="RRYQHRRRTIGRSRGPHEATERTGRRGSSHKQQPRHT
FT                 SSRTTRPGTMDHDDVLAAINALLDEPEGYDPAQPGFDRPATAPESTPTTTS
FT                 RPAVRVAMAGYRQGRLVQPSDRRNSERNAWMFQPPPAPPRRLPTPRNQPVD
FT                 QRRPTLEPLRVYGPAPPPSIPVEVEPGTIVDVPHFAIHVSRQYKARMGNRR
FT                 WHLRFDRCGRLRSCREKSYPPASSQE"
XX
SQ   Sequence 4694 BP; 1122 A; 1525 C; 1299 G; 748 T; 0 other;
     ttggcgcccg aacagggacc gataaaccgc tccgagaaac agcagaaatg ccgaaaacgt        60
     gggtatacct cgcgtcaaaa gcagatttaa caaaaacgct tgaatcgctc ggtctcgaca       120
     ccaccggaac attagacgac ctccgtcgac gagccagcga ctacgtaaac cgacaccccg       180
     aaagattcac tgacgtgctc tccctaccag ggcccgcgat ggaacccccg caaatcaacg       240
     tcacggccgt agaccccgaa ccgggcgcag aggcgcacgc aaagacgatg aatcagatac       300
     gtaagtgggg gtgccacttc gatggcaaag accccctatc attcctagag cgggtcgacg       360
     agctcaaaga cgagtacgga tacggggacc accaaatgct gcgagggtta ccggaattat       420
     tgagggggga cgccctgctg tggtaccgaa acaaccggac gacctggggg acatgggatg       480
     agttcgtaac cgagttccgc gattactatc taccgcgtcg atactttagc caattacgtc       540
     gcgacataca aacccgcgta cagaaaaccg acgagccata tcggaaatac gccaccgagc       600
     ttctcaccat gatgagacgc gcagggggat acgcggccgc cgaacaaatc gatatactgt       660
     acgaaaacat ggaaccgcgt tataaactat acgtgcgacg gggcgacata caccgcgtaa       720
     acgacctact acgaggcgcg gaagagttcg aaaccttaga tagccagtgc cgagcccggc       780
     agactgcacc gaaacccagc gcagctgcag caaccgcata cgataaaacg gaatgctgct       840
     ggcggtgcaa gcagagagga cacacgcgtt tcgattgccg acgtattccc cggaagttct       900
     gttcccagtg cggtaaggac ggcgtactta cgcgagattg tcaccctccg ccgggaaacg       960
     ccgccggagc cgagggaaac gcggtcgcgc cccgcccctc cgaataacgt acctaccgcg      1020
     accgcacctg catattagag tccaccacct atcgtttctc gcgctgctcg atacggggtc      1080
     cgaggcgtca ttcgtcagtc cgcagaccgc cgccgcgctt cggggcatcg gactggttat      1140
     ccgacccgcc accggcaacg ttcacctcgc gaaccaaacg gtcacccaga tctctggttg      1200
     cataaccctt ccggtcacga taggggggcg gaaggtctgg catgagatgc agattatgcc      1260
     gcatctcgat gctgacgtgt tattaggcgt cgacttctgg gctcgcttgc gccaggccat      1320
     cccgccaccg ccgatacgtc gcgaccccgc gactacgcca ccgcacatct ccggaacaag      1380
     ctacgggggc ctcgcgccga ccgagaggga aaaactccgc gaattcctgg aacacgagct      1440
     accacttttt gacgacatac gggggcccac cgaccgcgtc cagcatacaa tccgcgtccg      1500
     gaataacgcc cctattaaac agagatacag accccgcaat cccgccatgc aagcgattat      1560
     cgacgccgag gtcgaagaaa tgctccgcga cggcgttatt gaaccctccc gcagcgcgtg      1620
     gagctcaccg atcgtgatcg tacgaaaaaa ggacggcaaa ccgcgttttt gtgtcgattt      1680
     ccgccgggtg aacgaggtca ccgagcccga tgcgtatccg ctcccgcaga tcaccgccac      1740
     tctagataag ctgcgagggg ccagatacct gaccacgctg gacctgcgga gcgggtactg      1800
     gcaggtccca ctcgcccctg agagccgccc ggtgaccgcg tttactgttc ccggcaaggg      1860
     acttttccaa tttcgggtaa tgccgttcgg attacactcc gcgcccgcga cgttccaacg      1920
     cctgctggac gcggtcctgg gacctgagct ggagccgcgg gttttcgtgt atctagacga      1980
     catcattgtc gtgacttcct cactcgagga gcacctcgag acgctacgcg aagtgttccg      2040
     gcggctgcgg gaggcccgcc tacggctcaa tccggagaaa tgcaaatttg gggtaaaccg      2100
     cctcacatac ctcgggcacg tggtcgaccg cgacgggatt cggaccgacc cagagaaaac      2160
     cgacgcgatt gcgaaatggg aggtacccac gaccgtccga caggtgcgac ggtttctggg      2220
     ggtcgcatcc tggtatcgac ggttcgtccg ggacttcgcc gccatctccg ctcccttgac      2280
     gcagctgacg cggaaaaacg tcaaatggcg atggggaacc gagcaacaaa cagcctttga      2340
     ctcgctaaaa aacacgctca cgtccgcgcc ggttctcgca tgcccggact tcacccgcca      2400
     gtttgtcgta cagacagacg caagtacgtc agggttgggg gcggtcctca cccaagactt      2460
     ccccgaaggg gaacgcgtga tcgcgtacgc cagccggacg ctcaacgccg ctgaacggaa      2520
     ttacagcgca accgaactcg agtgcctcgc ggtcatctgg ggcgtccgga aattccgctg      2580
     ttacctcgag ggctaccggt ttagggtcgt caccgaccac cagtccttgc gctggctccg      2640
     aacgctggat tcaccgaccg gtcggctggg ccgatgggcc tttgaattac aacaatacaa      2700
     cttcgaggtc aaatatagaa agggagcact aaaccgcgtg gccgacgcgt tatcccgcca      2760
     aaccgccgta agcacgatca cacgcccaaa atgtccctgg taccggcgca tgtggcaggc      2820
     cgttaaaaag gcacctcgag acgttccgga ttatcggata gagaagggca aacttaaaaa      2880
     acacgtgcta cataccctaa atttcaagga aataccgccc gaatcgcagt ggaagcactg      2940
     cgttccgacc gacgagcgca ccgagatcct gcgccggtac cacgaccaac cgaccgcagg      3000
     gcatctcggg atcgctaaga ctatcgcccg cgtggcggaa cattattact ggccggggat      3060
     gttccgttac atcgcccggt acgtccgcca atgcccggaa tgcctggcgc acaagcccgc      3120
     tcagacgcga cccgccggcc ttttacatcc gactccggtg atacggccct ggcagcaggt      3180
     ggcgatagac ctcgtcggcc cgttaccacg caccgcccga ggacacacgt gggcgctcac      3240
     catgcaggat cggttcacca agtggctcga agtccgcgtc ctgcgtcgcg cctccgcgaa      3300
     taacattgtc gacaaagtca ccgaggcaat aattctgcga cacgggtgtc cggaagaaat      3360
     actatccgac aacgggactc aattacgatc cacgcagttt gagcatctgt taagaaagaa      3420
     cggtatccgc caccggctca cacccgcgta cgccccgcac tgcaacccag tggagagaac      3480
     aaatcgggta ttaaaaacaa tgattgctca gtacctccga cggaaccatc gcacctggga      3540
     cgagcacgtc agtgagttgc aattcgcgta taatacggca acgcacgagg ccaccgggta      3600
     tacccccgcg ttcctgattt acgggcggga gctccgacga ccgaccgaac cccccgccga      3660
     aaccgaacgc ggaccgccac acgcattaca gcgccggctc cgcgacgcat acgaagtagt      3720
     cgaaatccaa aacgcgcgcg cattccagaa gcaagaacgc cattacaacc tccgccgccg      3780
     agactggcaa ccaaaggcgg gggaatgggt ctggaaacgc gaccaccctc tatctaaacg      3840
     cgcggacgcg tttaacgcga agttggcacc taagttcatc ggcccgctgg aagtccgacg      3900
     catcatctcc cccgttatag tcgacctgcg aagccggggg ggtaagtggt accgacacgt      3960
     ccacgtgcaa gacctgcggg ctaccgataa ccaaaggcac gatgacgacg ataccagcac      4020
     cgacgacgaa caataggccg atcacgcgga ccgcacgagg ctaccgaacg aacggggcgc      4080
     cgcggaagct cgcacaagca gcagccaagg cacacttcgt ctcgaaccac ccgaccggga      4140
     acaatggacc acgacgacgt actcgcagcc atcaacgcgc tcctagacga gcccgaaggc      4200
     tacgatccag cacaacccgg gttcgaccgc ccagcgaccg ccccggagtc aacgccgaca      4260
     accaccagcc gaccagcggt ccgcgtcgcc atggccgggt accgccaagg acgtctagta      4320
     cagccgtccg accgccgtaa cagcgagcga aacgcttgga tgttccagcc gccacccgca      4380
     cctccacgcc gactaccgac gcctcgtaac cagccggtgg accagcgcag gccgactctc      4440
     gagccgctca gggtatacgg cccggcgccg ccaccatcaa ttccagtgga agtggagccg      4500
     ggaaccatcg tcgacgtgcc ccattttgcc atccacgtca gccggcaata caaggcccgg      4560
     atgggaaatc ggcggtggca cctgcggttt gaccgctgcg gacgactccg atcctgccgc      4620
     gaaaaatcct accccccggc ttcaagccaa gaataagcgc cctagggtca gcgccactct      4680
     taaagagggg gtgg                                                        4694
//
ID   Gypsy-39_MoPha-LTR repbase;    DNA;    INV; 965 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-965
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1203-1203 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 965 BP; 221 A; 321 C; 237 G; 186 T; 0 other;
     tgtaacgaac cgcgttccta agcggctaac aacgaccgca aggcccggcc gaccatccgc        60
     cgggccaaga aacgggccga gaaacggacg agagcgcgcc cataagcact ccacaccgcc       120
     gagatgacgc gcatctcgga ggcgcttcgc ctccctcctc tcgaaccagc atcccggaga       180
     tgtaaccgag aggaggccga ggaactccga aaactctcga gtcgctgccg gggaccatat       240
     ataaggccgc ccggcagcga caaacttcac ttctcgttat cccgtccgat acgttccgtc       300
     gacgagaaga caagccctac gagccagcaa aacggtggag tgttctccgt catcgccgag       360
     agttctcggc ctagctcgat tctttttcct tcctcgctag cagacaacgg gggtagagcg       420
     tgctctgtct ccgccgagag ctctcggcag ctagcaggga tccttcccga ccgcatcctt       480
     acggcccggt aaacgacacg gagtgttctc cgtcttcccc cgagagtact cggggccggc       540
     gccgttccag aaaaccaagc cgccgttcga ggaattgccg taacaattcg tagaaaacat       600
     cgggacgcga gacagccggt tccacaccgc gcgcccgccg gccacctagc ccaaacgtcg       660
     ggctcgcgac acgcgccgcc cgcctcaccg cgcaccgccg acatcccgcc ataccagaca       720
     gctgatcggc ccgctgtcac gcgctccgct cctgatcacc gggaaatatc gctgtacata       780
     gtacgaccgt tgtatatact tcattcgcgt tgtaaatatc cgagtaaaca tcattgtact       840
     ttaataaaga aataaattgt atcgttcaac ctatccactg catttctgct gttttctgaa       900
     cctttttcgc cctggccttt tatttccgac gagttaaaat ctccgcgcga aaaacggacg       960
     ttaca                                                                   965
//
ID   Gypsy-39_MSe-I repbase;    DNA;    INV; 4178 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4178
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 916-916 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..3142
FT                 /product="Gypsy-39_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase (partial)."
FT                 /translation="MTVGKIKEFNLETGNWALYCERIDMYFVANGVEEKLK
FT                 LPTLISIVGEEVYELMVTLANPKKPTELKYEDLVDLVRGHLQPRPSVWVQR
FT                 YRFRQKKQSANENIMQFVAALKKASQECEFGMNLNDNLCDQFVCGVRSELI
FT                 RQRLFAEPATMSFSEAVTLATSLEAAERDAAAVVLPLTPAATVDCQALNAT
FT                 SSRNRRPFMSGGSSRDAGESADVKISKDSCTACGGRHQTQECRYSNFVCAL
FT                 CKNKGHLRKICPFKYSDKQNNGRQRQRLDRRHTHYTSEQETLESQKALESA
FT                 NSECDEEEPMFRLNVGDYSPVKLTLLVDNTKLTMEIDTGSACSCISKRTYN
FT                 ELFKDLKLEVCDLVFKFYDGSKVQPLGVIRPLVQYKERKRCLDLFVVDKGV
FT                 TCLLGRQWLFELGIQIPILTRGTMDHFKVECNNLNDILDRYKNVLDGKLGC
FT                 YTGGQAALRVRKDATPVFCRARPVPFALRERVDAALDVMQKEGIVEPVDCS
FT                 DWATPLVLVPKGNGQLRICADYKVTLNPVLMVDRYPLPRIDELLSNLAGGE
FT                 EFSKIDLSQAYNQICLTEESKMFTVVNTHKGLFKYNRLVFGLSSSSGIFQR
FT                 IMCDVIKGIPNVQCFCDDIIVTGNTRKLHLIALEALFHKLESVGLKVNKDK
FT                 CTFLSKEIKYLGFIVNKNGIKPDPDKLRAIINMPTPNSVSELKSFLGMVNF
FT                 YARFVPKLSDLLFPLHGLLRKGRHWSWGQTQTDAFEAVKRLMVSSAVLTHY
FT                 DPKKQLVLTCDASSYGVGGVLSQRDAALGTERPIAYVSRKLRQSEQAYSQI
FT                 HREALAIVYCIKKFHQYLYGCRFKLKTDHKPLVSLFGPNKGIPTMAASRMQ
FT                 RWALIVAAYEFDIEYIGSSNNGADIFSRLPVDDYDKYEPPEQTYLHFATNA
FT                 ILLDNNTIKKETARDPILSRVCNYVENGWPEEVGIVQLKPFLTRKSELYIE
FT                 LGCLMWGHRLVVPSSCRPRVLQELHEPHMGIVKTKSYARSYVWWPGIDEAV
FT                 EAAMPCVCYVRFGRVRPTGGTSGTVGLASTPV"
FT   CDS           2928..4121
FT                 /product="Gypsy-39_MSe-I_2p"
FT                 /note="integrase (partial)."
FT                 /translation="YPVHVDRXSCKNCMNLTWVSSKPSRMLGVMYGGRGST
FT                 RRWKQPCRACVTCASVASAPPAAPPEPWGWPQRPYERIHLDFLGPIGGYTY
FT                 LVSVDARSKWIEVFKMVRTTAEATISKLRESWSRWGLPKQVVSDNGPPFSS
FT                 NDFRSFLSNNGIEQIFTAPYHPASNGAAENAVKIVKGVIKKALHEGINVEL
FT                 AIYRFLLVYHNTPHCTTGVTPAQLLQGRKLRTRLDSLKPVVTKLAKSWGPT
FT                 DERSRLVREFKPGDLVWYKDFAGGSKWSQGKVLECLGRRDYTVVACDGSHI
FT                 HRHIDQLKRRLMSSCVFPKVPSIPSQGVGSERSTPVIVADETRGTGVKEMP
FT                 AVGTSTGAGIATTDTPAKTSAQTAPGTESVVAPREPRPKRERKPIKRLGID
FT                 NCQI"
XX
SQ   Sequence 4178 BP; 1166 A; 772 C; 1069 G; 1169 T; 2 other;
     ttggcgacga ggatgggata gcgttatcat gacggtcgga aaaattaaag agtttaattt        60
     ggagacaggt aattgggccc tgtattgcga gcgtatagac atgtattttg ttgctaacgg       120
     cgtggaagag aaattaaagt tgccgactct aatctcgata gtcggagaag aggtctacga       180
     gttaatggtc acattagcta atcctaaaaa accgacagaa ttgaagtatg aagatcttgt       240
     ggacctagta cgcggacacc tacaaccgcg gccgtcagta tgggtccaac gttaccgttt       300
     tcgccagaaa aaacagagcg ccaatgaaaa tataatgcaa ttcgtggccg ctttaaagaa       360
     ggcatcccag gaatgcgaat ttggtatgaa tttaaatgat aacctttgtg accaattcgt       420
     atgtggtgtg agaagcgaac ttattcgaca gcgtttattt gccgaaccgg cgacaatgtc       480
     gttttctgaa gctgtaactc ttgcgacttc cttggaggcg gcggagcgcg atgctgcggc       540
     tgttgtactg ccgttgacac cggcagctac agttgattgt caagcgttga atgctacttc       600
     gtcgcgtaat aggagacctt tcatgagcgg agggagcagc agggatgccg gtgaaagtgc       660
     tgacgtcaaa atttcgaaag attcgtgtac tgcctgtggt ggccggcatc aaacacagga       720
     gtgcagatat tcaaattttg tatgcgctct gtgtaagaat aagggtcatt taaggaagat       780
     ttgcccattt aagtattcag ataaacaaaa caacggaagg cagaggcagc gattagatcg       840
     caggcatact cactacacta gtgagcaaga gacgttagaa tctcaaaagg ccttagaatc       900
     tgcaaactct gagtgcgacg aggaagaacc aatgtttcga ttaaatgtag gtgattatag       960
     tccagttaaa ttaacgttgt tagttgataa taccaagttg acgatggaaa ttgacactgg      1020
     ttcagcctgc tcgtgtataa gtaaaaggac gtacaacgag ttgttcaagg atctgaagtt      1080
     agaagtttgc gacttagtgt tcaagtttta tgacggatct aaagttcaac ccctcggtgt      1140
     tattagaccc ttagtgcagt ataaagagcg taaaagatgt cttgatcttt ttgtagtcga      1200
     taaaggtgta acatgtttat taggtaggca atggttgttt gagcttggta ttcaaattcc      1260
     tatattaaca agaggtacta tggatcattt taaggtagaa tgtaataatt taaacgatat      1320
     tctcgacagg tataaaaatg ttttggatgg caagttgggt tgttacacgg gtggacaggc      1380
     ggcgctgcgc gtgcgaaagg atgcgactcc tgtgttctgc cgcgcccgac cagtgccgtt      1440
     tgcgctgcgt gaaagggttg atgctgctct tgacgtcatg caaaaagaag gcatcgttga      1500
     acccgtcgat tgttcggatt gggcgactcc tttggtattg gtaccgaaag gtaatggtca      1560
     gttacgtata tgtgctgact acaaggtaac ccttaaccct gttttgatgg tcgatagata      1620
     tccattacca cgtatagacg agctactttc gaatcttgcg gggggtgagg aattttctaa      1680
     gattgacctg tcacaagcat acaatcaaat ctgtctcacg gaagaatcaa aaatgttcac      1740
     tgtagttaac acacataagg ggttatttaa gtataatcgt ttggtctttg gcttgtcgtc      1800
     tagtagcggt atattccaaa gaattatgtg cgatgtcata aagggtattc ccaatgttca      1860
     atgtttttgt gacgatataa tcgtcacagg taatacaagg aagttacatt taatagcgct      1920
     tgaagccttg tttcacaaac tcgaaagcgt aggtcttaaa gtaaataaag ataaatgtac      1980
     gtttttatca aaagaaatta agtacctcgg atttatagta aataaaaatg gtattaagcc      2040
     ggatccagat aaattgagag ctattataaa catgccgact cccaatagcg tttcagaatt      2100
     aaaatcgttt ttgggtatgg tgaattttta tgctaggttc gtgcccaagc ttagcgattt      2160
     actttttcct ctgcatggct tgttgagaaa aggtaggcat tggagttggg ggcaaacgca      2220
     aaccgatgcg tttgaagcgg ttaagcgttt aatggttagt agtgctgttt taacccatta      2280
     tgacccgaag aagcagcttg ttttgacttg cgatgcaagt tcgtatggtg taggaggggt      2340
     gttgtctcag cgtgatgcgg cactgggaac ggagcgccct atagcatatg tatcgcgaaa      2400
     gcttaggcag tcagagcaag catactccca gatacatcgc gaagccttag ctatagtata      2460
     ttgcataaag aaatttcacc aatacttata tgggtgtcgt tttaagctaa agactgatca      2520
     taaaccgctc gttagtttat ttggtcctaa taagggaatc cctacgatgg ccgcaagtcg      2580
     catgcagcgt tgggcgctta tagtcgcggc atatgaattc gacatagagt acataggttc      2640
     cagtaataat ggtgctgata ttttttcgcg tttaccagtg gatgactatg ataaatacga      2700
     acctccggaa caaacttatt tacattttgc aacgaatgca atacttctcg ataacaacac      2760
     aatcaagaag gagacagcac gcgatccgat attaagtcgt gtttgtaatt atgtagaaaa      2820
     cggttggcct gaagaagttg gcatagtgca attaaaacct tttttaacta gaaaatccga      2880
     gttgtacatt gagctgggtt gtttaatgtg gggtcatcgt ctggtagtac ccagttcatg      2940
     tagaccgcgw gtcttgcaag aattgcatga acctcacatg ggtatcgtca aaaccaagtc      3000
     gtatgctcgg agttatgtat ggtggccggg gatcgacgag gcggtggaag cagccatgcc      3060
     gtgcgtgtgt tacgtgcgct tcggtcgcgt ccgccccacc ggcggcacct ccggaaccgt      3120
     ggggttggcc tcaacgcccg tatgagagaa tacatttaga ctttttaggg cctatcggtg      3180
     gttatacgta cctagtttct gttgatgcta gatcgaaatg gattgaggtt tttaaaatgg      3240
     tgcgtacaac agctgaagct acaatcagta agctgcgtga gtcatggtcg cggtggggtc      3300
     ttcccaagca agtcgtctcc gataatggtc ctcctttttc tagtaatgat tttagaagtt      3360
     tcctctctaa taatggtatt gaacaaattt tcacggctcc ttatcatcca gcgtccaatg      3420
     gggccgcaga gaatgcagtt aaaatagtta aaggggttat caaaaaggct ttacatgagg      3480
     ggataaacgt cgagttggcc atatacaggt ttttgttagt atatcataac actcctcatt      3540
     gtactactgg tgtaactcct gcacaattgt tgcagggtag aaagttacga acaagacttg      3600
     attccttaaa gcccgttgta acgaagcttg cgaaatcatg ggggcctaca gatgaaaggt      3660
     cccggttagt gagagagttc aagcctgggg atctggtttg gtataaagat ttcgcgggag      3720
     gttctaaatg gtcgcagggg aaggttttag aatgtcttgg taggagagat tacactgtcg      3780
     tggcttgtga tgggtcccat atacatcggc atattgacca gttgaaacgg cggttaatga      3840
     gttcatgcgt gttcccaaag gtaccaagta ttcctagcca aggtgttgga tccgaaagat      3900
     cgacgcccgt tatagtagca gatgagacta ggggcacagg tgtcaaggaa atgcctgcag      3960
     tggggacgtc gacaggagcg ggcattgcta cgactgacac tcctgctaaa acgtcagcwc      4020
     aaacggcgcc cggtactgag tctgttgtcg ccccccgtga acccaggccc aaacgcgagc      4080
     gtaagcctat taaaaggctt ggcattgaca attgccagat ttaaaagatt tattgtttcc      4140
     gctgaaataa tgcttattgt taatttagtg tggaggtg                              4178
//
ID   Gypsy-39_MSe-LTR repbase;    DNA;    INV; 145 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-145
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 965-965 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 145 BP; 38 A; 9 C; 22 G; 75 T; 1 other;
     tgtaatgttt tattatttta agtaagtagg tttattggta gttttctttt taaatgttct        60
     ctttttataa tgtgttgtca tgttctttat ttgtcactga aktaataaat tatcatgaga       120
     ttcgtttggt attaaagata tttta                                             145
//
ID   Gypsy-39_SiCu-I repbase;    DNA;    INV; 5094 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5094
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5061-5061 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..5048
FT                 /product="Gypsy-39_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSLLMNFTNIFSERFPFFINPNEVSWWIIMTVVSIIF
FT                 IFLHYLYLLSQIAQEYLFTLLGFPSTNARPPGSSSTAPAGPQIPVSHQSLG
FT                 GDTTRALDELKKQHQESKVHSERKFKEIATLIDQLKKEIFDDQHHSKATFD
FT                 QLKDDHIDFNKKLENHDKFHDLLSEILNARTVVRPLYDAISQHVIAKMNER
FT                 APRPFTSRFSTVPDAAIHRREPIDAAPAESSIFSPVTSRNVQRPTAPPLGT
FT                 SSYSPHFPVQRPGAQPPASSPSAHHGFSSSPHPPPYYSTANIPLPVFDPRL
FT                 NTADFFLEELESYMIQKRFPPEDRLCQLGFIFSKQKDTNLWWQRTKLLVHS
FT                 WDDFRYHFTEMWGTREDTAAMERLLNRRQQKTEPFSQFAFDMELQYLKLNR
FT                 DHDVNNNKKILSFISERALPWLQPHLLASNANNIYDLIHLASKLEAPLPKS
FT                 PTTDRQTGRQVTTPAKSFQPNNKSQHPSSHTSPLRRAPCTHCGMSNHSSAE
FT                 CRRKQQIHTAALGCEEEDEHSEPNQPQANSAPANEFKNGSAEDDHFMGSFR
FT                 MHNISNLTTHNLPVIPITYISRAPSKLGKKVTGDTLIDSGANISGVSDQHL
FT                 SSKDIIRPWCRGPVTLADGSTTVPKGRIMRKFRLCGRQFEHSFAIIENCDY
FT                 ALLLGMDFLRNSGLIMDFEFLQIWFRDTPHIKFTINTRDISSTNIRALKLM
FT                 TDIEREKISELLAKYKDVVDTNHLGKTDAIEHEMTMTTHIPKLQRPYPVSQ
FT                 QKQQIIDTIVSEMLQKGLIRESNSPYSSPVLLRPKPNGWRLVNDYRYINEH
FT                 TVPDGFPMRKVADALRLLANAKYLSTIDLEKGFWQVPLRECDRKYTAFQTS
FT                 KGLFEYTVMPQGLRNSPCTFQRLMNKVLRGMDAFVFVFQDDILIFSDNFED
FT                 HYSHVNEVLKRLQKAHLTISRSKCQFGKTSVKFLGHIISTNGIERNPEKVH
FT                 AIINFPRPSTKKKLRGFLGAAGWFRHFIPKMADIAYPLFGLLKGKQKFKWT
FT                 AEAEEAFQALKSAMAVEVVLQHPDFTKPFILQVDASSRGAGAILLQKDANG
FT                 HQRPIAFHSKALNQAQQNYSAVERECYALITGLEKFAEYLDGSTFTIESDN
FT                 TAASYLMQMRNKNSRLMRWALKLQEWSPNIVHIKGTENVWADLLSRNPPSD
FT                 ENDEQDFPSPLDSPPQTACNAITLSCNIDKAILKTAQQEDDHCTALLRTKP
FT                 DQFCELQGIIYKTLRGGKIVPVIPPALQTTVLKIMHDIPASGHLGVDKTFD
FT                 RLKTRAYFPGMKRIVQQYVKTCNLCQRHKYDNKLPAGKLGQKPITAPWHTL
FT                 YADLLGPYTPSTSQRFTYLLVVVDSFSKYTFLQPLKDGTASSISKALEDKI
FT                 FYQFGPPKQLVTDNATSFRSTNMSLLCRSWGIKQIFSSAYHPQTNLAERVN
FT                 RVVKPMIRIFLDEQPHTKWSAHIPSFQLALNTSNHASTGYSPYHILFNQEA
FT                 RLPFDNALQPDSDNNDTVQVPYSTSDSNSYSSRFAQFQELIATVTSNLERA
FT                 SEAQKRYHDVHHREETYKLGDSVVVRDITLSSKEKKVVGGLSPPYSQPGLI
FT                 TKILSDLTYEVTFPDGSTRGPIHVSLLRRFHHRSEPPTLREMKLDDSSSDS
FT                 EAEDRTTQRTLRPRGTTNYRDLHLGRGSR"
XX
SQ   Sequence 5094 BP; 1498 A; 1426 C; 978 G; 1192 T; 0 other;
     aatggtgccg aaatcggtcc ttggagtaca atattacagt taaatattgt acattcctaa        60
     tctcacagtg ctttagtgcc agtgacttat tcacccaacc attgaacatg tcgctactaa       120
     tgaattttac aaacattttt agtgaacggt tcccattctt cattaatccc aatgaagttt       180
     cgtggtggat catcatgacg gtcgtctcaa taatatttat tttcctccac tatctgtatt       240
     tactgtcaca gatagctcaa gaataccttt ttacgctgct cggatttcca agtacaaacg       300
     cacgcccacc tggatcctca tcaacagccc cagcaggtcc tcaaattcct gtatcgcatc       360
     agtcattagg aggtgatact actcgtgccc tagacgagtt gaaaaagcaa caccaagaat       420
     cgaaagttca ctctgaaagg aaatttaagg aaatcgccac attgattgac cagctcaaga       480
     aggaaatctt cgacgatcag caccatagca aagctacatt tgatcaactc aaagatgacc       540
     acatcgactt caacaaaaaa ctagaaaacc acgacaagtt tcacgacctg ctcagtgaaa       600
     ttttgaacgc tcgtacagtt gtacgccccc tatatgacgc catatcacaa catgtgatcg       660
     ccaaaatgaa tgaacgtgct ccccgcccat tcacatctcg attttcgacg gttccggacg       720
     ctgctattca tcgaagggaa ccaatagacg ccgctccagc tgaatcttcc atcttttctc       780
     cggtaaccag ccgcaacgtc cagcgtccga ctgccccacc tttggggacc tcatcatatt       840
     caccgcattt tccagtccaa cggcctgggg ctcaaccacc tgcctcctct cccagtgcac       900
     atcatggatt ttcatcgtcc ccgcacccac caccatacta ctcaacagca aacattccat       960
     tgccagtatt tgaccctcgt ctaaataccg ctgacttttt cctcgaagag ctggaatcct      1020
     acatgattca aaaacgattc cctccggagg atcgcctttg tcaactaggc ttcatcttca      1080
     gtaaacaaaa ggataccaac ttatggtggc aacgaaccaa attgcttgtc cattcatggg      1140
     atgacttccg ttatcatttc acggagatgt ggggtacccg agaagacacc gcggccatgg      1200
     aacgtctcct caaccgccga caacagaaaa ctgaaccatt ttcccagttt gcgttcgaca      1260
     tggagcttca atacttgaaa ctaaaccgtg accatgacgt caacaacaac aagaaaatcc      1320
     tctcattcat ctcggaacgc gcactaccat ggttacaacc tcatttattg gcatctaacg      1380
     ccaacaacat atatgattta atacacctcg cttccaaatt ggaagctccc ttgcccaaat      1440
     caccgaccac agatagacaa actggcagac aagtcacaac accggcaaag tccttccagc      1500
     ctaacaacaa atctcaacac ccatcatcac acacttcacc tttacgaagg gctccctgca      1560
     ctcactgtgg tatgagtaac cacagctctg ctgagtgtcg ccgaaaacaa caaatacata      1620
     ctgcagcgct cggttgcgaa gaagaggacg aacactcaga accaaaccaa cctcaagcca      1680
     acagtgcgcc tgccaatgag tttaaaaacg gaagtgccga ggatgaccat tttatgggtt      1740
     ccttccgaat gcacaatata tccaacctta ccactcacaa cttaccagtg ataccaatca      1800
     cgtatatctc ccgagcaccc tccaaactgg gcaagaaagt cacaggtgac actctcatcg      1860
     actctggagc aaatatttct ggcgtcagtg atcaacacct cagctcaaaa gacatcatcc      1920
     gaccatggtg tcgcggacca gttacacttg cggatgggtc cacgactgtt cctaagggca      1980
     gaataatgcg taaatttcgc ctttgtggcc gacaatttga gcacagcttc gccataatag      2040
     aaaattgtga ctacgccttg ctccttggca tggacttctt gcgcaacagc ggactaatca      2100
     tggacttcga gttcctacaa atttggttcc gtgacactcc gcacatcaaa ttcaccatca      2160
     acacgcgtga catttcatct accaacatcc gtgctctcaa gctcatgacc gacatcgaac      2220
     gggagaaaat atctgagcta ctcgccaagt acaaggatgt ggtggacacg aatcatttgg      2280
     ggaaaacaga cgccatagag cacgagatga cgatgaccac ccacatcccc aaactacaac      2340
     gaccatatcc tgtgtcccag cagaagcagc aaattatcga cacaatagta agtgaaatgt      2400
     tacaaaaagg cctcattaga gaatcaaatt ctccttacag ctcaccagtc ctactccgcc      2460
     ccaaaccaaa cggatggcga cttgttaacg actatcgcta tattaacgaa cacacagtcc      2520
     ccgatggatt tcccatgcga aaagttgcag acgcccttcg tctacttgcc aacgcaaaat      2580
     atttaagtac catcgatctt gaaaaggggt tttggcaagt accgctacga gaatgcgatc      2640
     gcaagtacac agctttccaa accagtaagg gattatttga gtacaccgtt atgccgcaag      2700
     gattgcggaa cagcccatgt acattccaac gacttatgaa caaagtcctc cgggggatgg      2760
     atgcattcgt gttcgtgttt caggacgaca tcctcatttt ttctgacaat tttgaggatc      2820
     attacagcca tgtgaacgaa gtgcttaagc gcctgcaaaa agcgcattta accatctctc      2880
     gttccaaatg ccaattcgga aaaaccagtg ttaagttttt gggtcacatc atttccacca      2940
     acggaatcga gcgcaaccca gaaaaagtgc acgccatcat aaactttccc aggccatcaa      3000
     ccaagaagaa attgagggga ttcctggggg cagcgggctg gtttcgccat ttcatcccga      3060
     agatggctga catagcttac ccgctatttg gcctgttgaa gggaaaacaa aaattcaaat      3120
     ggacagctga ggccgaagaa gcattccaag cgctcaagag cgcaatggcg gttgaggtag      3180
     ttttacagca ccccgacttt accaaaccat ttatccttca agtagacgct tccagccggg      3240
     gagccggagc catattacta caaaaagacg ctaacggtca ccaacgcccc atcgcattcc      3300
     atagcaaagc acttaaccaa gcccaacaga attactcggc agtggaacgt gaatgttacg      3360
     cgctcatcac agggctggaa aaattcgccg aatatctgga cggctcgact ttcaccattg      3420
     aaagcgacaa tacagccgct tcttacctaa tgcagatgag aaacaaaaac tctcgcttga      3480
     tgcgatgggc tctaaaactg caagaatgga gccccaacat tgttcatatc aaaggcaccg      3540
     aaaatgtgtg ggcagattta ctttctcgta accctccatc cgacgagaac gacgagcaag      3600
     atttcccgtc acccctcgac tccccaccac aaacagcatg caatgctata acactttctt      3660
     gcaacattga caaagcgata ctaaagacag cacaacagga ggatgatcac tgtaccgctt      3720
     tactccgcac caaaccagat caattctgtg aacttcaagg catcatttac aagacgctgc      3780
     gaggggggaa aattgttcca gttattcctc ctgctctaca aaccacagtt ctcaagatta      3840
     tgcacgacat ccccgcttca ggccaccttg gagtagacaa aacttttgac cgcctgaaaa      3900
     cccgagcgta cttcccaggg atgaaacgta tcgtccagca atacgtaaaa acgtgcaacc      3960
     tttgccaacg ccacaagtac gacaacaaat tacctgcagg gaaattggga caaaagccca      4020
     tcactgctcc ctggcacact ctctacgctg atcttttggg gccatacact ccctccacgt      4080
     ctcaacgatt cacgtacctg ttagtcgtcg ttgacagctt ttcaaaatac acatttttac      4140
     agccattgaa ggacgggact gcttcatcaa tctccaaggc actggaagat aaaattttct      4200
     accaatttgg ccctcctaaa caattagtca ctgacaacgc cacatcattc cggtccacaa      4260
     atatgtccct actatgtcgc agctggggaa tcaagcagat attttcatct gcctaccacc      4320
     ctcaaactaa cttggcggag agagtaaatc gcgtcgtcaa gcccatgatt cgcatctttc      4380
     tagatgagca gcctcacacc aaatggtctg cccacattcc ctctttccag ttagctctaa      4440
     acaccagcaa ccacgcttcg actggatatt caccgtatca catcttattc aatcaagaag      4500
     cccgtctccc tttcgacaac gcgctacaac ccgatagtga taataatgat acagtgcagg      4560
     tgccgtattc taccagtgac tctaattcgt attcttctcg ctttgctcaa tttcaggaat      4620
     tgatcgcaac cgtgacatcc aatttggaac gtgcatccga agcccaaaaa cgataccatg      4680
     atgtccacca ccgcgaggaa acctacaagc ttggggattc ggttgttgtt cgtgacatca      4740
     cgctctccag caaggaaaag aaagtggttg ggggacttag cccaccttac tcacaaccgg      4800
     gacttatcac taagatcttg tctgacctca catacgaagt cacttttcca gacggcagca      4860
     ctaggggacc tatccacgtt tccctgcttc gacgcttcca ccatcgcagc gagcctccca      4920
     cacttcgaga aatgaaactt gatgactctt catcagactc ggaagcagaa gatcgcacaa      4980
     cacagcgcac actccgtcca cggggaacca ccaattaccg tgatttacat ttgggacgag      5040
     gaagtcggta attaccctta ttccctaggg tattaccggt ttggcggggg gatt            5094
//
ID   Gypsy-39_SiCu-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-392
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5116-5116 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 392 BP; 133 A; 100 C; 60 G; 99 T; 0 other;
     tgtagccctc gaagatacca tcatctcatt tcaccccaaa tgtcaccaga cccaactcta        60
     aatacaaata tcgcatgcct cagcagcgtg ccaacctcaa caatgtacca agaagaagtg       120
     gtggagcatc aagcgcacac cacttggaat ttgggatttc tcgggactac aagttttggg       180
     catgttccaa tagtgtagac tcccatatat aatatatcgt aaattgtcaa gtcaatcaaa       240
     atcagttaat gcattcaatt gttcaataaa tattcagtta actatcactt ataaacgctc       300
     tcccacattt aaacacgtta tttcgactaa cagtcataaa accacggaca taaccacacc       360
     caacttcccc aaagagaagc cggtgggtta ca                                     392
//
ID   Gypsy-39_SiOr-I repbase;    DNA;    INV; 4641 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4641
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 373-373 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           408..1346
FT                 /product="Gypsy-39_SiOr-I_1p"
FT                 /translation="MAVTLTDEQFRQLLQTLTVAPQNPAPAIQALNGNFAK
FT                 CSSRFNGDKNCDVKAFIDAISIYKDCTQISDDNALRGLPMLLDGFAATWYQ
FT                 GVKSSVNTWQDALDLLRVTFGPQKPPYRVYRELFSMEQDAGTPTDIFVCKS
FT                 RSVLAQLPPTTLTEEVQIDMVYGLLHRQIREKLPRDSVNNFNELLAKARLV
FT                 EETFEFKERADTKETLRENRPRCQYCRNFGHTKDDCRKLLSSKQNKDSLVL
FT                 QTQNKPESGAAGSNTSTNSAGKYKGGSSSTSHMPSSSSVSCYGCGKIGFIR
FT                 SNCPNCKNLRLRQLSSAVSTL"
FT   CDS           1187..3694
FT                 /product="Gypsy-39_SiOr-I_2p"
FT                 /translation="CGKIQGWLFVYLPHALVVIGKLLRLRENRIYSVQLPK
FT                 LQKSEASSIEFCSFDTLISPRDRPVLTINILGHQGQGLIDTAAKQSVASTA
FT                 LCKILQSEGHSFNDEEIMVKLADGRSELKKVLTTKVDVILNCKSIPTRFIV
FT                 FPDTEARTLLGIDFVQDSKIVLNTHKNKWAFSDNPSLEFDLLYEQPPCTPP
FT                 SGNAEMPMTLSCADILRPDEGAVLSENEKEQFNSFLEARKDIFKVGGEPTP
FT                 FATHYINTKDHQPIALPPYRMAPQKKQVLKKELDRLLEEGVIEECESAWAA
FT                 PVVLVDKKDGGVRLCVDYQKLNQVTTTDFYPLPRMDDLLHAAKRTFYMSTI
FT                 DLRAGYHQVSVHEPDRDKTAFVTPFGTFRYNRMPFGLKNAPSTFQRLMDRF
FT                 RNGLKKENGNIVVLTYLDDLIVLSSSFDEHLEDLDIVFDRLRHFKLQANRK
FT                 KCVFACSQVKYLGHLITTQGLSVDPEKTVAIAKRPVPRNVHEVKSFLQTAS
FT                 WFRRFIKDFAEVSRPLSNLTKKNAVWKWTSEEQASFDLLKSLLVSAPILRQ
FT                 SDENKPYIIRTDASSYALGAVLLQGEGEQEHPVEYASRLLTDTERNYSTTE
FT                 REALAVVWALNKFRGYIECSQITLQTDHQPLRWLLSIKSPTGKLARWALQI
FT                 QAFDLKIEYLPGRRNVVADMLSRPPCDHLEQDKCEICTFAIEFPRRSATEI
FT                 RNEQIKDPDIAKIIKSFEESTDTDIDFRKWTDRGYILTQGVLYRYSPEEDE
FT                 QEAQLVVPLQERETILKEFHDAPSAGHYGIERTYQRIAKKYYFPGMRRFIA
FT                 EYLKNCTDCQRYKASNQKPAGLLQTLRTPSDLKH"
XX
SQ   Sequence 4641 BP; 1378 A; 1032 C; 1046 G; 1175 T; 10 other;
     ctggcgctca acttgtggct ggaaagattt gcaaagtgtg aaaattgcga cgaattcccg        60
     gcttgtcgtg tcgtcgtatt ttcggctccc ggcgcggcgt tgccgatttt ggaccaaagt       120
     acgaaacgcg ttcgttgacc ccgactccga taacttcgat cagctgatcg catcacagtg       180
     cagtgtgtta agttatcatt cacgatttga ctataagctc ctgcgattat tttgttasga       240
     taatcgagag gccaataatc gaatatagtg aagtgttttc aagcaaaaaa taggaaggcc       300
     tagcaaactg taagtacagt agttagaaag attttgcttt gtccacggtg gagcatccct       360
     atcatttacg atctcgagga ccagtcgaac gcacggactc ggagaagatg gcggtcacat       420
     tgacggatga acaatttaga cagcttctac agacacttac agttgctcct caaaatccag       480
     cgcctgctat tcaagcttta aatggaaatt ttgcaaaatg ttcttcgcgt tttaatggcg       540
     acaaaaactg cgacgtaaaa gcatttatcg atgcaatatc gatttataaa gactgcacgc       600
     agatttcaga tgataatgcg cttcgaggtc ttccaatgtt gctcgatggg ttcgccgcaa       660
     cctggtacca aggtgtgaaa tcgtcggtta atacgtggca agatgctttg gacttactac       720
     gggtaacttt cggtccgcag aaaccgcctt atcgcgtgta tagagaactt ttttcaatgg       780
     aacaagacgc cggtacacct acggatattt ttgtctgcaa atcgcgttcg gtgttagccc       840
     agctacctcc aaccaccctt acggaggagg tccagattga catggtgtat ggactgcttc       900
     acaggcaaat tcgggagaag ctaccgcgcg acagcgttaa caattttaat gaactgcttg       960
     ctaaggctcg attagtagaa gaaacttttg agtttaaaga aagagcggat actaaagaaa      1020
     ctcttcgcga aaaccgtcct cgatgccaat attgtcggaa ttttggacat actaaagatg      1080
     attgtcggaa actgctgagt tctaagcaaa ataaggactc gcttgtcctt cagactcaaa      1140
     ataaaccaga aagcggtgcc gctggtagta acacgtcgac aaatagtgcg ggaaaataca      1200
     agggtggctc ttcgtctacc tcccacatgc cctcgtcgtc atcggtaagc tgctacggtt      1260
     gcgggaaaat aggatttatt cggtccaact gcccaaactg caaaaatctg aggcttcgtc      1320
     aattgagttc tgcagtttcg acactttgat tagccctcgt gacagacctg ttttaactat      1380
     aaatatatta ggtcatcaag gtcaaggact aatagataca gctgcgaaac aaagcgttgc      1440
     tagcacggcc ttgtgcaaaa ttctacaaag tgaaggtcac tctttcaatg atgaagaaat      1500
     aatggtcaaa ctcgctgatg gtcggagtga attgaaaaag gttttgacaa caaaggttga      1560
     cgtcatttta aactgcaagt caatacctac gagattcatt gtmtttcccg acacagaagc      1620
     tcgaactctt cttggcattg actttgttca agattcaaaa attgttttga atacccataa      1680
     aaacaaatgg gcattttcgg ataacccaag cctagaattt gaccttcttt acgagcaacc      1740
     tccatgtaca ccaccttcag gcaacgctga aatgcctatg acgttatcat gtgcggacat      1800
     tcttcgccca gatgaaggag ctgtgttatc agaaaatgag aaagagcagt tcaactcgtt      1860
     tttggaagcc aggaaggata tcttcaaagt ggggggagaa ccaaccccat ttgctacaca      1920
     ttacatcaat accaaggatc atcagcctat agcgcttcca ccttatcgca tggcccctca      1980
     gaagaaacaa gttttgaaaa aagaactgga tcggcttctg gaagaaggag taatagaaga      2040
     gtgcgaaagt gcgtgggccg cgcctgtcgt cttggttgac aaaaaagacg gaggtgtgcg      2100
     tctttgtgtg gactatcaaa agctaaatca ggttactacg acagactttt atccgttgcc      2160
     gcgaatggac gatttgctcc atgcagctaa acgtacgttt tacatgtcaa caatagactt      2220
     aagagcgggc tatcatcagg ttagtgtaca cgaaccggat cgcgataaaa ccgcctttgt      2280
     aacaccattt ggcacatttc ggtataaccg catgcccttc gggctaaaaa acgcgccatc      2340
     cacgtttcag cggcttatgg atcgttttcg gaatggacta aaaaaggaaa atggcaacat      2400
     agtagtactc acctaccttg acgacctgat tgtgctttca agttcgtttg atgaacactt      2460
     agaagacttg gacattgtgt ttgatagact acgtcatttt aagcttcagg caaatcgaaa      2520
     aaagtgtgtg ttcgcgtgtt ctcaagttaa gtatctcgga catttgatta cgactcaagg      2580
     actctcagtg gatccagaaa aaacagtcgc catagccaaa cgaccagttc ccagaaacgt      2640
     ccacgaagtg aaatcgtttt tacaaaccgc cagctggttt cgtcgcttca ttaaagattt      2700
     tgctgaagtt tcccgtcctc ttagcaatct gactaagaag aatgcagttt ggaaatggac      2760
     atccgaagaa caagcatcgt ttgacttatt gaagtcactc ttggtgtctg ccccgatcct      2820
     tagacaaagt gacgagaaca aaccttacat catacgtact gatgccagca gctacgccct      2880
     tggagctgtt ctactacaag gtgaaggaga acaggagcat ccggtagaat atgcaagtcg      2940
     tctactcact gacacagaaa gaaattattc gacaacagaa cgagaagctc ttgcagtcgt      3000
     ctgggcatta aacaagttca ggggatatat agagtgttcc cagatcacgt tacagactga      3060
     tcatcaaccc ctgcgttggt tgttaagtat taagtctcca actggtaagt tggcgagatg      3120
     ggccctccaa atccaagcct ttgacctgaa aatcgaatac ttacctggca gaaggaatgt      3180
     tgtagctgat atgctgtcaa gacccccttg cgaccaccta gaacaggaca aatgtgaaat      3240
     ttgcactttt gccatagaat ttcctcgtcg aagtgccacc gaaatcagga acgaacagat      3300
     aaaagaccca gacatagcca agataatcaa gagttttgaa gaatccacgg ataccgatat      3360
     agactttaga aaatggactg acagaggtta tattctgaca caaggagtat tatatcgata      3420
     ctctccagaa gaggatgagc aagaggccca attggtggtt cccttacaag agagagaaac      3480
     aattttgaag gaatttcatg acgccccttc agcaggacat tacgggatag agcgcactta      3540
     tcagcgcata gccaagaagt attatttccc cgggatgagg cgatttattg ccgaatattt      3600
     aaagaactgc acagattgtc aaagatataa ggcatcaaac caaaagcctg ccggcctgct      3660
     kcaaactctg cgtacgccca gcgatttgaa acattaagca ttgacttgtt cggtcctctg      3720
     ccacctgggc ctagkagtga aaggtggatc tttatcgtag aagacacctc aacaaagtgg      3780
     gtsgagttat ttgctttaac tcaggctaca gctgaagaat gcgcccgtgt cctcttagac      3840
     gaagtattct tcaggtatgg actacctaga aaattaatca gcgacaatgg cgtccagttc      3900
     atctccgctg tgatgcagca agtttgcttc atactagaca ttaaacaagc ccttatacca      3960
     ttgtatcatg cctccgccaa tatggttgaa aggaagaata gggacctaaa actcagcttg      4020
     cgatcctaac taaggatgat cacggttcat ggccacagaa acttccagta atacgtttct      4080
     caatgaaccc gcctggtgtg agtccaccgg tcaaacwgct gcttacttgc actttggaag      4140
     agagttgcgt accttaaatg aagtctgctc tgatattcgt cctatagtgg aagcagagaa      4200
     ttttgtgccc cgtataactc catatttgaa ggacatagcc cccwcttgaa ggaagcaaga      4260
     gaagttcatg aaaaggaaca ggacgaaaac gttatcatga tcagaaaaga caagacactc      4320
     ccatgtakga agttggtgat cgagtatgkg tcaatgttca cgcgttaagc gacgccacca      4380
     agggacttac ttcaaagttc taccccaaac gtgatggacc atatgaaatc attaaaatag      4440
     tgtcacccac tagctatcag gtggcccaac ctaatgacct cactacacct ttgggagtac      4500
     atcatgtatc atcgcttact gcggccaaaa ctaggtcgac taacgagtca tcgcctccgc      4560
     cggaacctat agtccccatc aggaaagggg cgtcccaaga ggtggccctt cctcgggmcg      4620
     agttcaaggc cagggggagt g                                                4641
//
ID   Gypsy-39_SiOr-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-227
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 407-407 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 227 BP; 60 A; 55 C; 45 G; 63 T; 4 other;
     tgtaacgasc tcccgagctg tcccatgwtc cccaaatacg gtgaacaagc cgacaacgcc        60
     gcccgagcag tcagtctgcg aaggtcttka cgtgacattg aacgccgggt gatttttaat       120
     cgttttatta ttgtttacta agttttttcg taatwaaagt agttgtaact ttcacgcgag       180
     tgtggattat ttaccagcaa cccaaaatcc ccaaccggaa tcttaca                     227
//
ID   Gypsy-39_SpEx-I repbase;    DNA;    INV; 4876 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4876
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4108-4108 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           12..4217
FT                 /product="Gypsy-39_SpEx-I_1p"
FT                 /translation="MRIHLPSLSVIILFFFSLHPFTFIKLRGKMDKQGEGE
FT                 SMAPGESSCALSQSNAGDRESTTSANEEQSQQKGGNVPPEFYSHMITMMQN
FT                 MSERLSKQRDKVKITDIFLPSYDPDGNVGVREWCNHISAAKTNYELCDYDI
FT                 RMKVTSLLKGRAKLWADNWLVTTSTWDELRQNIITTFEPENRYSRDVLKFK
FT                 EHNYDHTKDIAEFLSQSWILWRRVTRDKLDNNDAVEAVIGTISDERLRIEL
FT                 MNARATSVPELISVASSIRVKRPSYQCSNQPPNKRQKYSIDNRNATYCTFC
FT                 KKPGHASRDCRNKNTSVDLETRSNEKIPSSSAIPKQNDNRFCSFCSKSGHT
FT                 FDTCYRREKHITSNVNSVTRNKLNLNTMRMRLGDIVINAIFDSGAECSVMR
FT                 ESVANKLPGKRQQSVHYLRGIGPFPVVSLGILTTICDIDNINVEIDFYILP
FT                 DYEMTSDVLIGANILSETGLTVIVTQNSATLCSQPRVMHMRSTTSLFDNIN
FT                 HDLSSESDVEQLLCLLNKYSDIFTRGFSRTRVNTGQLEIRLKNPDKFVERR
FT                 PYRLSPVEREKVKMIIKELIDNDIVRESKSPYSSPIILVKKKNGDDRMCVD
FT                 YRELNSNTVRDHYPLPLIADQIDQLAGGQYYTTLDMASGFHQIPVSADSIE
FT                 KTAFVTPDGLFEYKTMPFGLCNAPSVYQRCINRALGPLLSPGSADKAHNDS
FT                 VAQVYIDDVINKCRDFSSGLKYLERIFIALRKSGFSVNIDKCLFFKRSIEY
FT                 LGNVVENGQVRPSPKKVEALLKAPVPTNVKQVRQFNGLAGYFRRFIPNFAR
FT                 TMAPLYELTKQGARWQWTHVHEEARQKIVHHLTSTPVLTIFQEGEPTELFT
FT                 DASSLGFGAILIQIINGRQHVVAYFSMRTTDIESRYHSYELETLAVVRAIK
FT                 HFRHFLYGRQFKVITDCNALKASKHKKDLLPRIHRWWAYLQNFEFEIEYRK
FT                 GERMQHADYLSRNPDPLTVNVLTNNLDWLNIEQRRDNQLRPIIEALHNGEN
FT                 VPGYHLEGNVLKFERQDAVLGLQKLIVVPKSFQWSLVNTFHSALKHPGWEK
FT                 TLHKIRETYHFDKMSTTVRDFVDNCIVCRTSKQTSGATQVQLHPIAKPAVP
FT                 FEVIHMDITGKLGTSNEQEYVVVTVDAFSKYVLLRYTNDKSQHSTLAALKQ
FT                 VIHLFGAPRQVIVDGGREFLGEYKNYCDMFNIEIHSIAPGVSRANGQVERV
FT                 MATLKNGLVMIKNYETPEWHTALESLQLALNCTVHRTTGIAPLTLLTRRQN
FT                 CVPPELLSLVNLDNALIDIEALERHVQQKMTQASIKDKARFDKGRAKIQRF
FT                 QRGDFVLIKNNPRNQTSLDLKFSVPYEVHRVLDNDRYLVKKVVGHHGRPRK
FT                 VAHDQLRRAPQPGGSTQAAVSPPNDPQPGPSSDGTVVAS"
XX
SQ   Sequence 4876 BP; 1509 A; 1062 C; 1024 G; 1280 T; 1 other;
     tcagaagtgg gatgcgtatc cacctaccct ctctgtccgt tattatttta ttttttttca        60
     gtcttcaccc gtttacgttc atcaagctgc gcggcaagat ggataaacaa ggcgaaggcg       120
     aatcaatggc gccgggtgaa tcatcgtgtg cgctgtcgca gtccaacgct ggtgatcgtg       180
     aatcaactac gtcggccaac gaggaacaat cacagcaaaa gggcggtaac gtaccacctg       240
     aattttattc ccatatgata acgatgatgc aaaatatgag tgaaagactg tcaaagcaac       300
     gcgataaggt taaaatcacc gacatatttc taccttcata tgatcctgat ggcaacgtcg       360
     gagtccgcga gtggtgtaat catatttctg cagctaaaac taattacgaa ctttgtgact       420
     atgacattcg aatgaaagtg actagcttac taaaaggccg ggccaagttg tgggccgaca       480
     actggctcgt caccacttcg acgtgggatg aattacgtca aaatattatc actacttttg       540
     aacccgaaaa tcgttattcg cgggacgtgc ttaagttcaa agaacacaat tacgaccata       600
     ccaaagatat tgcagagttt ttatcgcaat cgtggatttt gtggagacgg gttactagag       660
     acaagcttga taataatgac gcggtagaag cggtgatagg aacaataagt gacgaacgcc       720
     ttcggattga actcatgaat gccagagcta cttcagtgcc ggagttaatt tcagttgctt       780
     cttctattcg tgttaaacgt cctagttatc aatgctctaa tcaaccacca aataagcgac       840
     aaaaatattc tatcgataat cgaaatgcta cttactgtac attttgtaag aagcccgggc       900
     acgcttctcg cgattgtcgt aataaaaata catcggtaga tttagagacg cgaagtaatg       960
     aaaagatccc tagttcatcg gcaataccta aacagaatga caatcggttt tgttcatttt      1020
     gctcaaaatc tggtcacact ttcgacacgt gttaccgtcg ggaaaaacac attacttcta      1080
     atgtgaattc ggttactagg aataaattaa atttgaatac tatgcgtatg cgattaggtg      1140
     atatagttat caatgcgata ttcgatagcg gagcggaatg ctctgttatg cgcgaatcag      1200
     tggcaaataa gttacccgga aaacgacaac aatcggtgca ctatttacgc ggaataggcc      1260
     cctttcccgt agtttcactc ggcatattaa caacgatatg tgacattgat aatattaacg      1320
     ttgagataga cttttatatt ttgcctgatt atgaaatgac gtcagatgta ttgataggtg      1380
     cgaatatttt aagcgaaact ggattaaccg taattgtgac tcaaaatagc gctaccttat      1440
     gttctcaacc ccgcgtcatg cacatgcgat caacaaccag tttattcgac aacattaatc      1500
     atgatttaag cagtgaatct gatgttgaac aattgttatg tcttctcaat aaatattctg      1560
     atatttttac gcgcggtttt tcccgaactc gtgttaatac aggtcagttg gaaatacgtt      1620
     taaagaatcc agataagttt gttgaacgac gaccttatag gctaagccca gtcgagcggg      1680
     aaaaagttaa aatgattatc aaagagctta tagacaatga tattgttcga gaaagcaagt      1740
     ctccttattc aagcccaatt attttagtaa aaaagaaaaa cggtgatgac cgcatgtgtg      1800
     tagactatag agaattgaat tcaaacaccg tgcgtgacca ttaccctctt cctctaatag      1860
     ctgaccaaat agaccaattg gctggtggtc aatactacac cactttagat atggcctccg      1920
     gctttcacca aattccagta tcagccgatt ctatagaaaa gacagccttc gttactcctg      1980
     acggactttt tgagtataaa accatgcctt tcgggttgtg taatgcacct tcagtgtatc      2040
     agagatgcat taaccgtgcg ttaggtcctc ttttgagccc cggtagtgca gacaaggccc      2100
     ataatgacag tgtagctcaa gtctatattg atgacgtaat aaataaatgc cgcgattttt      2160
     catccggtct caaataccta gaaagaatct ttatagcgtt acgtaaatcg ggattctcgg      2220
     ttaatattga taagtgtcta ttctttaaac ggtcaattga atacctcggc aacgtagtag      2280
     agaatggtca agttcgccct agtcctaaaa aggtcgaagc cttattgaag gccccggtac      2340
     caaccaacgt taaacaggtc cgtcaattta acggtctcgc gggatacttc cgtcgcttta      2400
     tacctaattt cgcacgaacc atggcccccc tttacgaact aacaaaacaa ggcgctagat      2460
     ggcaatggac acacgttcat gaagaggcac gtcaaaagat cgttcatcac cttacttcca      2520
     caccggtctt aacgatattt caagaagggg aacccacaga attatttaca gacgcgagta      2580
     gtcttggctt tggggccatt ctcattcaga ttatcaacgg acgacaacac gtagttgcct      2640
     actttagcat gcgtacaaca gacatagaaa gtagatacca ctcttacgag ctcgaaacct      2700
     tggctgtagt acgggcaatc aaacatttcc ggcactttct ctacggacgc cagtttaagg      2760
     tgattaccga ttgtaatgca ctcaaggcct cgaagcataa aaaggactta ctgccccgca      2820
     ttcatagatg gtgggcctac ctccagaatt ttgaatttga aatagagtac aggaaaggcg      2880
     agcggatgca gcatgctgac tacttgagcc gaaatccgga ccctctgact gtcaacgtgc      2940
     tgaccaacaa cctagattgg ttaaatattg aacaaagacg cgataatcaa ttgcggccca      3000
     tcattgaagc actacataat ggtgaaaatg tccccggata tcatctcgaa ggtaatgttc      3060
     ttaaatttga gcgacaagac gctgtcttgg gtttgcaaaa gctcattgtt gtgccaaagt      3120
     ctttccagtg gagccttgtc aatactttcc atagtgctct caaacaccca ggttgggaaa      3180
     agactcttca taaaattaga gaaacttatc acttcgacaa aatgagcacc actgtacgag      3240
     acttcgttga caactgcatt gtgtgcagaa cttcaaagca aacatccgga gctacgcagg      3300
     tacaactaca ccctattgct aagccagcgg tcccatttga agtwatacac atggacatca      3360
     cgggaaagct gggaacttca aatgaacaag agtatgtcgt tgttacggta gacgctttct      3420
     caaaatatgt gctgttacgt tatactaatg acaaaagtca acatagcact cttgcagccc      3480
     tgaagcaagt catccatctt tttggagctc caaggcaggt aatcgtggac ggaggacgag      3540
     aatttttagg agagtataaa aactactgtg acatgtttaa tatagaaata cactccatag      3600
     caccaggcgt cagcagagct aacggacaag tcgagcgagt gatggcaaca ctaaagaatg      3660
     gcctggtaat gattaaaaat tacgagactc cagaatggca cacagcgctg gaaagccttc      3720
     aactcgccct caactgcaca gtccacagga ccactggtat agccccactt acactattaa      3780
     ctcgacgaca aaactgtgtt ccgccagaac tgttgagctt ggttaacctg gacaacgcac      3840
     taattgacat tgaagctctt gaacgccacg tgcaacaaaa aatgacacag gcttctataa      3900
     aagataaagc aaggtttgac aaaggtcgag ctaaaattca aaggtttcaa agaggtgact      3960
     tcgttttgat taaaaacaat cctagaaacc agacttctct tgatctgaag ttcagtgttc      4020
     cttacgaagt tcacagggtt ctggacaacg accgctacct cgtaaagaaa gtagtgggac      4080
     atcatgggcg ccctcgcaag gttgcacatg atcaactgcg gcgcgcccca caaccagggg      4140
     gatccactca ggcggccgtg tcgcctccaa acgatcctca gcctggacca tccagcgacg      4200
     gcaccgtggt ggcctcgtaa ccaatccctt gccaaccatc agatgaacaa cactgaagga      4260
     agacgggtga gagcatttca tattgatttt atctgtccta ctgatcgctg atgcagttgc      4320
     tattatgagg gcgtaaaagc aaaaaaaaaa ataaaaaaaa acataaaaaa aataataaaa      4380
     aaaaaaataa aaaaaaaaaa atgctattgg cgtgtggagc cgtccaataa gcaaacttac      4440
     tcctgtccca aaagaattaa agtcccctgt gtaccacggc ctacaagacg gcccagagca      4500
     cagcatcgac ctgtcctact atccttagag cctctgtttt atacagcatc gacctttaac      4560
     ttacctatcc tttccttgaa cttgactttg tcttgttgtt gaaatgtgtg gctgtaaatg      4620
     taatgctcaa aactgcttac tattgtcatg tgagatgagt agtaggcacc tattcttatg      4680
     ttatttaaat gatgacatga tctgctgtgg tcacgtggag tgaacagtaa ttgagaataa      4740
     gataatctca ttgctaaaac ctttacaaat aggcttgtgt actgtggaag tgcatggctt      4800
     cagaacatct atttccctct attacagacg gagatcgaga gcgatgcagg gcacgcatcg      4860
     cgcatcagta tggccg                                                      4876
//
ID   Gypsy-39_SpEx-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-510
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4168-4168 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 510 BP; 156 A; 64 C; 93 G; 197 T; 0 other;
     tgtcgccgcg aggattatcc aatcaacatt ttattatctt taaaatgttt aattaattta        60
     aaatgatttt gtttgtaaat aataacagtc tcgaatttaa ttagtcgatt tcgatagtaa       120
     agatgtcaaa ataattcatt catttggcgg tagtagtgtt tttgtgatta atgaacgagg       180
     ttataaaagg tgtgattcga gcgaggaagc tcactttgtt gctgattttc ggagagtaaa       240
     cattgtaagt agaatctatg tcagattgat taaaatttat tattatttga atttaacgtg       300
     ttttcattat ttgaaatcct ctaaggctgc ttataaaatt ccttttacta tattgatttt       360
     agatcaaagt gtgtaacttg tattgctttg tgatgtaggc acctaattat gaattcttta       420
     catgttgtag ttatagcagg actgatggcc ataactgggc cagcagttct gcttattttt       480
     aaaaatctaa cgccatgctt aaatgcgaca                                        510
//
ID   Gypsy-39_TrNi-I repbase;    DNA;    INV; 4388 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4388
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 201-201 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~98.6% identical to
CC   that of Gypsy-3_SpEx-I.
XX
SQ   Sequence 4388 BP; 1512 A; 914 C; 849 G; 1110 T; 3 other;
     ttggtgaccc cgacgaagaa caatcaacat gactcattca ccctgcaaat caagcagcag        60
     ccggaaccgc cattttatcc cgtattcsgg ggttttggag ggaccaaccc agattatggt       120
     ttaagcaact agaagccata gaagcaaggc gacgattaca agtactatac ggtcatcgca       180
     aaactgccaa aagaagaaat aatacaggtt agtgacctca ttgcttgccc accgccaata       240
     gaaaagtaca ggctatcaaa gaacgcctaa tcagttgcta tgaggaatca gaccaacgtc       300
     agctccaaaa attattktct gaaatggatc tcggcgacca gaaaccatca catcttctgc       360
     gcaagatgcg ggccctgagt aacggaaata tcagcgacga aaccatcaaa cttctatggt       420
     tgaggcttct gccaccatca gtgacttcgg ttctagcagt cacagaagac atagatgtga       480
     acaagatgag ccagatcgcg gacaagatat taataaattc aacacgtaca gaggtgtcag       540
     ctgtaaacgg aaacaaatca ggcgacgatg caatgtcatg catactagca cagttagcag       600
     aaatgcaatt ggaactaaat gcaattcagc aaggtcaaaa aaactatcga cgcagcactc       660
     aaagttattc caatcgtcgg catttcctac cacgggcaag ttcaagagaa agaaggcact       720
     tttgttttta ccatggaaga tttaaaaaat atgcgcaaaa gtgtgttcaa ccttgtgatt       780
     ggaaacagga tctcaactca aggaaccagg gaaactaact gaagcacgga caacggcgga       840
     actctgtgct gttcacccgt ccaaccgcct cactattacc gaccgaaaaa gtggtatgag       900
     atttttgatt gacacgggag caaatatttc agttattagc aagccacaga gacattcact       960
     aatacaaaat gaacaatgta cactttatgc cgccaatggt acaaaaatta agacatatgg      1020
     tgaaaaaaca ctctctctaa acttggggct acgaagaaac tttgtatgga actttgtcat      1080
     cgccgatgta acacaaccga ttattggagc agatttttta gagcattata agctattagt      1140
     cgatatagct ggtcgaaaac tcatagatag ggtaactgag ctgacaacgc ccgcaaccct      1200
     gatcaaatcg acgcagcaaa caatccgcac tattaacatt gagacgaatc cacgcattac      1260
     tcaactatta aatgaatacg aggatattac gaaaccagcc tccctccaca ctactccaaa      1320
     acacaagatt aagcatcata ttatcactaa aggaccaccg gtatcagcac gtgcaagacc      1380
     attacctcct gataaatatc atatagcaaa gaaggaattt cagactatga tggagcttgg      1440
     catttgtcgc ccttcggaca gcccatgggc tagtcctttg cacatggtta agaaaaagaa      1500
     cggtgaatgg agaccatgtg gagattatag aatgctcaat agcgtgactg taccggacaa      1560
     atatccactt ccacgactaa ctgatttcac ttacatatta gaagggaagc aaatcttttc      1620
     caaaattgat attcgaaagg cgtaccactg cattcctgta gaaaatgtgg aaaaaactgc      1680
     tattatcact ccttttggac tttttgaatt tccaaaaatg cctttcggtt tacgcaatgc      1740
     ggcgcaaaca ttccaacgat tcatggactc gctattcagg gatttggatt tcgtattcat      1800
     attcgtcgac gattgtctta tagcatctga aaacgaggct ctacattatc aacatttgga      1860
     tacggttttc aaacgtttac atgaaaatgg attaacaatt aatctcgaaa aatgtgactt      1920
     tcttaagagt gaaatagatt ttctgggtta tcatacaaca cgtcgaggaa tacgaccaac      1980
     ggaggaaaag tacaaagcaa ttatggaatt tcctaaacct acgacaatca aggagctaag      2040
     aagattttta ggaatgatca acttttacag aaacaatctt cctcatgccg ctgaatatca      2100
     aactatctta aacaactacc tgacgactct aaaaagaacg ataattctcc aatttcttgg      2160
     acaacagggg ccgaaaaagc ttttgataaa tgcaaggaaa atataatgca cgcagtatta      2220
     acagttcacc cctctcgcac cgcccctttg gcacttatga cggacgccag ttcgacctgt      2280
     gttggcgcag ttctgcagca gaagtcagga cgtaattggg aaccattagg attcttttca      2340
     aagaaattaa gtgatactca acaaaaatac tcgacattcg acagagagtt gctcggaata      2400
     tatatggcag tcaaacattt tcaaaggtta gtcgaggaag agaatttact atctttacag      2460
     acatcgacct ttgacttacg cattttccca aaaaccgtca tcaaatgata cgccacggcg      2520
     aatacgacaa ctggatttta tttcacaata ttgtaccaac attcaacata tagaaggacg      2580
     tgacaatatt gtagcagacg cattgtcacg tatagaacaa attgatgtgc catcaccgat      2640
     taattatgct gacttagcag atgtcagcat gatgaccaag aattattacg acttcgtaat      2700
     aacaagaatt tgaaattttc aaatatcaag gttccgggtt ctactgaagt catcgcctgt      2760
     gacatatcta caggaaawaa tcgcccctat ttaccagaaa aatttcggag acaaattttt      2820
     aatgtcatgc atggactgag tcatcctggg aagagagcta ctaggaaaat gataactcaa      2880
     agatatttat ggacaagtat gaataaagat ataaatgaat ggtgtaaatc gtgcctagct      2940
     tgtcaaaaat caaaagtgca acgccacact atatcacctg tcgggaactt tatgccatct      3000
     cagcgttttg aacatctaca catcgatatt gttggaccgt tacctgtttc tcaaggaaag      3060
     cgatatttaa ttacaatgat agatcgttgt acttcttggc cggaagtatt tcccgttaaa      3120
     gatatcacag ccgaaacagt agcgcgcata ctgtatgagg gatggatagc aagattcgga      3180
     tgcccattac gcattactac ggatcaaggt cgacaatttg aatcaagaat atttgaatca      3240
     ctttcacaat ttttaggagt acacaaaatc agaacaacgc cttatcaccc acaatcaaat      3300
     ggaatgatag agagatttca tagaacttta aaagcggcgc taatgtcaag agaatctaat      3360
     gctaattgga tgaacgaaat tgcttcagtt ctacttggat tacgaagttg tgtacgcgag      3420
     gacacaggat atagtgcagc agagatgata tatggcgcac ctataaggct tcccggagaa      3480
     ttttttgaat cgtcacagcc ttccacatac gaagaatttg tcataaatat acaaaaggac      3540
     atttcccgta tgacgtcagc atcaaaacgc aagaaattta aacaaacagt tttcattcac      3600
     cccgagctca acaaatgctc acatgtattc gtgcgctgtg acagaataag gaaaagttta      3660
     acaccaccat acgaaggacc ttttctagtg acaaagagga tggataagac gtttatcatt      3720
     aaaatggggg acaatgaaaa agcaatatct atagaccgat taaaacctgc atttgtcttc      3780
     aatagtggaa cggacgtgcc aaattcagaa aataaccaca acgggcggaa cacgtacatc      3840
     acgaagtcag gacgggcggt taagccgaca gtacgattcg tcacttgctg acacgagtaa      3900
     tcagtccatt taaatactca ccgtattttg aaaataccat catataccgt cagtatctac      3960
     gagagaacaa tgggcaacca aagctccaaa gatcaaatcg tatataactc cgacagttgc      4020
     cttaatcaaa atgaagccga ccatctcaaa agtcttgtcc tggaagagct acggtggacg      4080
     agaaacattg caattggaca aatcctcatc acaattggca tccttcttct ctacggaata      4140
     ctgaagacct tagacagaag agtgaaaaca atagcaagaa acaatcagca caaatgcagt      4200
     ggatagttca tcgaccgccg ccgccgtcac aacaaaggca gcagttttta tttccttaga      4260
     attagcaaca atgacattac attacgcata ggatgtaatt tatcagcaag gttaagttat      4320
     tatataatta ggtacatact attttttttc aaattatatg ttaattattt tttaaagggg      4380
     ggagtata                                                               4388
//
ID   Gypsy-39_TrNi-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-201
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 167-167 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs. The consensus is ~96.5%
CC   identical to that of Gypsy-3_SpEx-LTR.
XX
SQ   Sequence 201 BP; 67 A; 41 C; 32 G; 60 T; 1 other;
     tgtagcggca ctatcacgtc gctacattac ttagatacga tagagataag acatacatgt        60
     taattgttgc mcgtttgtta agatagctaa acctgtaaat ctcacgcatc ttcttagtat       120
     ataagcacca gcaattgaag taataaatag acattaacca tctacagtct cattatttac       180
     cttgccacga agtctggcaa a                                                 201
//
ID   Gypsy-39_TrVa-I repbase;    DNA;    INV; 8636 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8636
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 284-284 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1200..2534
FT                 /product="Gypsy-39_TrVa-I_1p"
FT                 /translation="MNFSDGFNVWRQQSPVVNVGSPVSASPSNNQIRPPQT
FT                 GCGRARARSLPGSAQRSAPLRNVSVGHGFSPRHIQANVTGVVGGTGRGGAP
FT                 SSLNPNAQSYHYSHPVVNSGENPNVMSNQLETSQNTIVELIDRQTNNEASI
FT                 SSLLQEMKKLNSTMESFQEQIPTVMKNEIDNRNFPRNNFKRPNEPESNLVR
FT                 ADSQCSIASNHSGYYRGRPRSSLNFKDLPCFNGNIDHVHPKQFIVKVNRHY
FT                 NSFDTTDEIKLNEVGTLIKGKALTWFNVYYNSFRSFDQFCASFLDFFWGAK
FT                 AQDKVRIELFSKNQYCYSKHGDMTIYFLTFIQKASYLDDQLPESVLVSAII
FT                 KHFSPGVQRTLYQSGIRTISGMQDLLQVLDEDPELSPALSQGSNQTEPYRT
FT                 DNANQRQKYIPKPNALVRTVTVDNNDPQLQIAENSSATPNSENDSFFPSRV
FT                 "
FT   CDS           2513..7147
FT                 /product="Gypsy-39_TrVa-I_2p"
FT                 /note="retropepsin, SGNH hydrolase, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="FVFPKSCLNKIQSQAQVFQDFIPETGSNNFLFEIHIS
FT                 SVYSDDPGIKILAVIPNLFQVSYPRFQEGHLLFKIFLIKDISFLNLINSTD
FT                 LPIEFNLSNFKCLLFITNPNLILDSEFFRNLSDLPPDKIVKHLEQDFSWMF
FT                 PLILVPQLCDLSHRIPILICELVNVLRFIPDFTIFDFINQKIREELCVNNI
FT                 PIEILPINKELFSIDFLNQNTLKFSALKIIFSKLMISLPQFKELTMKQPQV
FT                 VRAIRQGTQYLVPESFLQEGTELNQVQRVTATSAVKDPHFLLSETNPPSGN
FT                 TRYKSPYVKCSVNGFEFEIMVDSGSEVSFFSLDFYKLLVETTGKDFPTLPT
FT                 TGVTLTGVTGVRSRNVSFQAFVDIFMGNHHFQKSFLIVPSMPCPAILGTDF
FT                 LEYFCACVNYGSKCLSLLSNQVIVPFTNHSAIESTEVKCNAVSLNTNPDRK
FT                 PTVYLFSDSHGREMEPLLKKKFEGSEVKVNFKPGARFDEVVAEIKKSSPLI
FT                 QPEDFVILIAGTNNIKRGKSKTKLKSEFNFKFLQNLSCKLIIFDIFPRHDI
FT                 SGIENQIKIANLHMRENLKSSTFIQSKHFLYRKNFNPRGLHLNKNGKQILA
FT                 DVIRDTVFKICLKSENHSFSSFHCQLSDLARADDSFNIDFDEDQLLTDQEI
FT                 REKVNNPQLSETQRNQLFDVIAKNRLVFSDRPGKCKGFSARFRVRNGDVFV
FT                 KRSYPIPFSKKEGVREEIDRMLKLGVLEKSYSPYSNPIVPVTKKTDGSVRL
FT                 CLDARTLNQCLISDAESPETMDSLLFKFNNANFMSTLDCTAGFWQIELDPA
FT                 SRELTSFQFEGKNYQFTRVPFGTSVSMQIFIKCTHEVLGPEVDAFLSRYVD
FT                 DFRIVSGTFEEHLSHLNTVFTKFLAAGMTLKFSKCVFIQPEAEFLGHLISK
FT                 EGIKMKPSKVAAIQDFPVPKCVKDLQSFLGLINFYKKFFKSLSDLTSPLLK
FT                 LINKNSVWRWDSEHQEAFKRIKLAFVSDVVLAFPDFSKPFYVNTDASLNAV
FT                 AGELFQYDSENNRRPIHYFSKVLSSAERNYTTTELELLAIVRSCEKFRPYI
FT                 LGFPVTVLTDHHALSFLNSCTLTSGRLVRWSLYLQEFNLNVEYVKGKDNIV
FT                 ADTLSRYPPELESLPKNNLEINVMSFKYALPKDIKNKFKNMDQFQKSDPRL
FT                 SKLIEKLSNKVPFKGDSLYLLHENLLFFQSSENSAWKVCIPKNLESELINS
FT                 THHSIGHFGVGKTYRHLNQVATFPGMFRKVKNIVSSCLDCQQSKTSQRTHA
FT                 PLIPIIPKEVLGTVSADLYGPLPVSKGNFSYLLVCVDLYSKYIKLYPLRNA
FT                 TGTQVANKFSNNYITDVGKPQAVLSDRGPCFRSNVWQGRLESLNIKKVHSS
FT                 VYHPSSNPVERYMRILGGMFRQYCPEKHNSWIDYVEFIEQCINNTVNDSTG
FT                 AAPVEILKGQKPENFLCSLIDYPDKNSKCNLRMEFVTERLLSRGQRRKERH
FT                 DRGFPLTNFKINDQVLLKMHHLSSARYGEIKKFFRIYEGPYTIVGEVGQNA
FT                 FKLSDKDSQVVGVFNASLLKPLVVLKDLS"
XX
SQ   Sequence 8636 BP; 2511 A; 1707 C; 1592 G; 2826 T; 0 other;
     aattggcgcc accaacgcgg gcccggtttt cattaatatt ttccggttct ttaaaaaata        60
     ttaaagatct tatgatctaa acaagtattc tagtgaagtg aaacgtgacg gttttcgttc       120
     atggccggcg tgcatgccgc catgacgacc acattattct cttagccttg atttccgacg       180
     aaatcttgta tcttttattt gtttcgcttt tatttatttc atctttgtgc tttgtaccgt       240
     tcatgtgatt aagtgattta gtgttcgagt ttctccccgt taaatctagt tgtgtgataa       300
     gtgctaatcc tcatggtggt ttcggtttcg tcagcctatt ttgtgtcgtc gccattttcg       360
     ccacgtcatc agaattgaaa atcgattaat cgacatccct tgtcgataac tcgcatcacg       420
     caactttcga tggttcaccg gtgaccgact catctttgtt tttgtttact aattcattcg       480
     aatcatagag cggacaattt ctgtttattt tttttgttgt atttcagtca tctagactga       540
     ttatttagtt aagttaacct gtgcattgct gcgaaatgtt gcgagttcaa tttttcaact       600
     atctactttt aaatctagtc aaaaaattca ttaattaatt aaatatgaat acagcatttc       660
     cctttgattt gctcagtgtt tcggttttct cttttcaaat tttctcatcg agtcatgatt       720
     tctttagtaa ttatttacca tctatctggt aattattttg acttgccgtg acgtcatgtt       780
     ttatcaaatc atgagccaga agatgaagaa acgccggcgt tgcactcatg gattcccgac       840
     ggatttgaaa cagatgctct gcagatcatt aacatcatgg atccttctca atctactttg       900
     gaacctgttc actctctcgg cggatcaatg gataagacgg acggtcttct ttctcggatg       960
     gatttgaaac tcgcctcatc tcgaatcaat cgcaattcaa atcaaacttc aagtcactaa      1020
     ttctggtcat caatttctct tcttcacagc tggatacctc ggaaacacgg atcaacgaac      1080
     tacccatcgc tacatcggaa gtacgacaag atttaccttc gtaagcagtt gctaaattat      1140
     ttcatctttt attttgtgtt atttgtgtgt atatttcccc aaaatatttt gtactcacca      1200
     tgaatttttc tgatggattt aacgtatggc gtcagcaatc ccctgttgta aatgtgggta      1260
     gccctgtgtc tgccagtcca tccaacaacc aaattcgacc acctcagact ggctgtggtc      1320
     gagctagagc tcggtcccta cctggcagtg ctcagagaag tgcacctctg agaaatgtta      1380
     gtgtgggaca tgggttttca cctcgccaca tccaggctaa cgtaactgga gttgttggag      1440
     ggacgggcag aggcggagca ccaagctcgc tgaaccccaa cgctcaatcg taccattact      1500
     cacatcccgt tgtcaatagt ggagaaaatc ctaatgttat gtcaaatcaa cttgaaactt      1560
     ctcaaaatac gattgtagaa ttgattgatc gacaaacaaa caatgaagct tcaatttcaa      1620
     gcctgttgca ggaaatgaaa aaactcaatt ccactatgga atcatttcag gagcaaattc      1680
     ctacagttat gaaaaacgaa attgacaatc gtaactttcc aagaaataat tttaaaagac      1740
     ccaatgaacc ggaatctaat ttggtcagag cagattcgca atgttccatc gcttcgaacc      1800
     actctggtta ttatcgtgga agaccaaggt catccttaaa ttttaaagat ctcccttgtt      1860
     tcaatggtaa cattgaccat gtccatccta agcagtttat tgtaaaggtt aatcgtcatt      1920
     acaattcttt cgataccact gatgaaatta agctgaatga ggtaggaaca ttgattaagg      1980
     gaaaggctct aacatggttc aacgtttatt ataattcgtt tcgaagcttt gatcaatttt      2040
     gtgctagctt cctagatttc ttttgggggg caaaggctca agataaggtt cgtattgagt      2100
     tgttctctaa gaaccaatac tgttattcaa aacatggtga catgactatc tattttttaa      2160
     cgttcattca aaaggcaagt tatctggacg atcaattgcc tgagtccgtt ctagtctctg      2220
     caataattaa gcatttttct cctggtgtcc agcgcacttt gtaccaatca ggtatccgga      2280
     cgattagtgg aatgcaagac ttattgcagg tactagatga ggatccagaa ttgagtcctg      2340
     ctctttctca aggttcaaat caaacggagc cttacagaac tgataacgca aatcaacgtc      2400
     aaaagtacat ccctaaacct aacgctcttg taagaactgt tactgttgat aacaatgatc      2460
     ctcagctgca aattgctgaa aactcatctg cgacacctaa ctccgaaaat gattcgtttt      2520
     tcccaagtcg tgtctgaata agatccagtc tcaggcacag gtgttccagg atttcattcc      2580
     cgaaactgga tcaaataatt ttctttttga gatacacatt tcatctgtgt attctgatga      2640
     cccaggtatt aaaattttgg ctgtcatacc taatttattt caggtatcat atcctagatt      2700
     tcaagagggc catcttttgt tcaaaatttt tctcatcaaa gatatatctt tcttgaatct      2760
     tataaattct actgatcttc caattgaatt taatctctca aattttaaat gtcttttgtt      2820
     tataacaaat cctaacttga ttttggacag tgaatttttc cgaaacttat ccgatttgcc      2880
     accggataaa attgttaaac acttagaaca ggatttttcg tggatgtttc ctttgattct      2940
     ggtgccacag ctgtgtgacc tgtctcatcg cattcccatc ctgatctgtg aacttgtaaa      3000
     tgttctcaga tttattccag attttactat ttttgacttt attaatcaaa aaatcagaga      3060
     agaactctgt gtaaataaca ttcctattga aatattgcct attaacaaag aattgttttc      3120
     tatcgatttc ttaaatcaaa acactctaaa attctcagcg ctcaaaataa ttttctcaaa      3180
     attaatgatc tctttacctc aatttaaaga attaacaatg aaacagccac aggttgtgag      3240
     ggcgatacgg cagggcacac agtacttggt gccagaatca tttctccaag aggggactga      3300
     attaaatcaa gtacaacgag tgacagccac atcagctgtg aaagatcctc actttttact      3360
     gtcagaaacc aatcctccat caggtaatac gagatataaa tctccatatg tcaaatgctc      3420
     agtcaatggt tttgaattcg aaataatggt ggattcaggt agtgaagtat cattttttag      3480
     tcttgacttt tacaaattgc tagtagagac gaccggaaaa gatttcccta cattgccaac      3540
     cactggtgtc actctaacgg gagtaacggg agtgagatct agaaatgtct cttttcaagc      3600
     ttttgttgac atttttatgg gaaaccatca ttttcagaag tcatttctga tcgtccctag      3660
     catgccttgt ccagctattt tgggaactga ttttctggaa tatttctgtg cctgtgtcaa      3720
     ctatggatca aagtgtctct cacttttgag caatcaagta attgttccct ttaccaacca      3780
     ctcagcaatt gagtctacgg aggtaaaatg taatgctgta agtttgaata ctaatcctga      3840
     tcggaagcct actgtttact tgttcagtga tagccatggg agagaaatgg aacccttgtt      3900
     aaagaaaaaa tttgaaggtt ctgaagtcaa agttaatttt aaacctggag ctcgtttcga      3960
     cgaagtagtc gctgaaatca aaaaatcatc acctttaatt cagcctgaag attttgtcat      4020
     tttaattgcg ggaacaaata atattaaaag aggcaagtct aaaactaagc taaaatcaga      4080
     attcaatttt aaattcttac aaaatctttc ctgtaaatta attattttcg acatttttcc      4140
     ccgccatgat atctcaggta ttgaaaatca gattaaaatt gcaaatttac acatgcgtga      4200
     aaacctcaaa tccagtactt tcattcaatc aaaacacttc ctttatcgaa aaaatttcaa      4260
     cccccgaggc cttcatctga acaagaatgg aaaacagatt ttggctgatg tcatcaggga      4320
     cacggttttc aaaatttgtt taaaatctga aaatcatagc tttagttcat ttcattgcca      4380
     actttctgat ctagcgagag ctgacgacag cttcaatatt gattttgatg aagatcaatt      4440
     gctaactgac caggaaatta gggaaaaggt aaacaacccc caactatctg aaactcaaag      4500
     gaatcaactc tttgatgtaa ttgcaaaaaa ccgtttagtt ttttctgatc ggccaggaaa      4560
     atgcaaggga ttctctgcga gattccgggt cagaaatggg gatgtgtttg tgaagcgctc      4620
     gtatccaatc ccgttttcaa agaaggaggg agtgagagaa gagatagata gaatgttaaa      4680
     actaggtgtt ctcgaaaaaa gttacagtcc atattccaac ccaatcgtac cagtcactaa      4740
     gaaaactgac gggtctgttc gtctttgtct ggatgcgaga actctcaatc agtgcctcat      4800
     ttctgatgcg gaatctcctg aaaccatgga ttccttgcta tttaaattca ataatgctaa      4860
     ctttatgtct acacttgatt gtacggccgg attttggcaa atcgagttgg atcctgcctc      4920
     tcgagaactt accagctttc agttcgaggg caagaattac caattcactc gagtaccctt      4980
     tggtactagt gtatccatgc aaatttttat aaaatgtact catgaagtct taggacctga      5040
     ggttgatgcg ttcttaagcc gctatgttga tgattttcgt atagtgtcag gcactttcga      5100
     agagcatctt tctcatttga atacagtttt caccaagttt cttgctgcgg ggatgaccct      5160
     gaaattttca aaatgtgttt tcatacaacc ggaagcggaa tttttgggcc atctcatcag      5220
     caaagaagga attaaaatga aaccttcgaa agtggctgcc atacaggact ttcctgtacc      5280
     taaatgtgtc aaagaccttc agtcattttt aggccttatt aatttctaca aaaagttttt      5340
     caaatctctt tctgacctta cttcaccttt acttaaattg ataaataaaa actctgtgtg      5400
     gcgttgggac tcagaacacc aggaggcttt caaaagaatt aaattagctt ttgtcagcga      5460
     tgttgttctt gcctttcccg atttctcaaa gcctttctat gttaacaccg atgcgtccct      5520
     taacgctgtg gcgggagagc tttttcaata tgactcagaa aacaaccgga gacctattca      5580
     ttatttcagc aaagtattga gttcagctga gcgtaactat actacaaccg agttagaatt      5640
     actggctatt gtcagatctt gtgaaaaatt caggccatat atattgggtt tccccgtcac      5700
     agtgttgacg gaccatcatg ccttgtcatt tttaaacagc tgtacgttga cttcaggtcg      5760
     gcttgtcaga tggagcctat atctccaaga attcaattta aatgtcgagt atgtgaaggg      5820
     caaggacaac atcgttgcgg atactctatc taggtaccct ccagagcttg agtcccttcc      5880
     aaaaaataac ctcgaaatta atgtcatgag ttttaaatat gcccttccaa aggacattaa      5940
     aaacaaattc aaaaatatgg accaattcca aaagtccgac cctaggttaa gtaaattaat      6000
     tgagaaatta tcgaacaaag taccttttaa gggtgattct ttatatcttc tacatgaaaa      6060
     tctgttattt tttcaatctt ccgaaaacag cgcctggaag gtatgcattc caaaaaacct      6120
     agaatctgaa cttataaact ctactcacca tagtattgga cactttggtg taggtaaaac      6180
     ctacagacat cttaatcagg tagccacctt cccaggtatg tttaggaagg ttaaaaatat      6240
     tgttagctca tgcttagact gtcaacagtc aaagaccagt caaaggaccc atgccccgtt      6300
     aattccaata atccctaagg aagttttggg aactgtatca gcggacctgt acggtcctct      6360
     gccagtcagc aaaggcaatt ttagttacct tcttgtctgc gttgacctct attcaaaata      6420
     cataaaactg tacccgttgc gaaatgcaac tgggacacaa gttgctaata aattttctaa      6480
     taattatata actgatgtag gcaagcctca ggcggttctg tcggaccgtg gcccctgttt      6540
     ccgatctaac gtttggcagg ggaggttgga gtctcttaac atcaaaaagg tacactcatc      6600
     tgtctatcac ccttcatcca atcctgttga gcgttatatg cggatactgg ggggcatgtt      6660
     ccgacagtac tgccctgaaa aacataactc ttggattgat tacgttgagt ttattgaaca      6720
     gtgcattaac aacactgtaa atgacagcac aggagcagct cccgtagaaa tccttaaggg      6780
     ccaaaagcca gagaactttc tgtgttccct tattgactac ccagataaga actccaagtg      6840
     caatttgaga atggagtttg taacagaaag acttttgagt agaggccagc gcagaaagga      6900
     aaggcacgat cgcggatttc ccttgactaa ttttaagatt aacgaccaag tcctattgaa      6960
     gatgcaccac ctctccagtg ctcgttatgg agaaatcaaa aaattcttcc gaatttacga      7020
     gggtccttac acgatcgttg gagaagtggg gcaaaatgct tttaaattaa gtgacaagga      7080
     cagtcaagta gtaggagtgt ttaatgcgtc cttgctaaaa cctttagttg tcttaaagga      7140
     tctaagttaa aaagaaaaaa aaaaaatgat gtcaaatctt tttttttttt tttttttttt      7200
     ttgagaattg ggggttgttg ccaatttcat ggtgcttgtt gtttttcatt atgttttttt      7260
     ttatttattt tttttctctt ctcactggat aatttattta tccagtttag ttttaagttt      7320
     tgtttttttt tttattacca tccaatattg gaaaccttta gttataagta aatttttcaa      7380
     cggaactttg tgttcaaaat acctagttat aagaaccgtc acgtaacttt tcatcaagct      7440
     acttccaaaa aagttttcaa aatttatttc attaaaatta aataaaatgt ttcatcaatt      7500
     gtttcttttt tttatcggac tgttgttcaa tgaataagat ccgaaaacaa catccaagag      7560
     cctggtaaga ggcaggtctc tgaatattga acaaactcaa tggaagcaag ccgggatagg      7620
     tgtcatagca ttgagtatgt cccaccccta attatgtatt aatgtttttt ctttttttat      7680
     ctggtctggt gtttcgacac tttaactgat ctccagtcca ttaccccttt ttgtccctag      7740
     ttccctccct cagattgttg aaggtgtagt acagcactcg ccgaaacatc gggtggtttc      7800
     tggcttggag aaggggtagt tgttgttttt atccatgagt cttagagccc gtcgatgttt      7860
     cggatggtgt tgtactattc actgtgccaa tcagtgaagc gacgctaatg gaagcaagcc      7920
     gggataggtg tcacagcatt agcgctcaaa agctttacat tcctatcagt ggcgatcagc      7980
     tgtaggaaga tcctataggt tcgagcaggc tgggccccta tagtcttttc ttgtgtgctt      8040
     aaaagcactt atgtcgttct caaaaattgt tttggaacca atgtctcccc ggtgatcctc      8100
     gacaggctga tcatgagaat gtcaccaaca ttgatcgctg tccttcactt tttttaccaa      8160
     ttttccccta cgttgtcgga tcaaaacaaa tgaaaactaa atgttttccc ctaattgatg      8220
     aacttttccg tctcattgtg taataaaatg ttttgtctcc ccagtttagg ttgctgtcaa      8280
     ctaaaaagtt ctttttattg tattttcagt catgaattat ctaattataa gttgtaactg      8340
     atatttttgt atttttttta gattgctttt gcaatcatgt atatgagttt ttgtttttgt      8400
     tatatttata taataaatgg cacttgtgca gtatcaactg caagaaaaaa aatttcagaa      8460
     agaggctgtc gcccagcact ttgttgcccg ccagccgaac agaaatttaa atgctaaaat      8520
     ttttctaatt tatatccgaa tatttgaatc ttgttgttgc cattgttttt gagaatcgcg      8580
     agttgcaccc atctttcaag ccaacgcttg aaaggtggat gtaacttggg ggtatc          8636
//
ID   Gypsy-39_TrVa-LTR repbase;    DNA;    INV; 593 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-39_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-593
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 343-343 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 593 BP; 130 A; 132 C; 142 G; 189 T; 0 other;
     tgtagcattg cagcagctaa attcaaatat cccgcgctga ctgtcgtcgg gggaagagta        60
     tgtggcgatt gcaggagcgt aggtgccatg cttctggcat cctcctcagt ttgaaggcgc       120
     atttaccgca ccaagcgtgg gtctatgttt tccgactgag gtggatggta ggagcaagga       180
     ctttagcgtg ttggttgttc ggacatcgaa tgatgctgtc tcgaccaatc aacgcgctcg       240
     ttacgttcct gggatcgcta cggggctcgt tccctcggcg catagtcaag ccaaatcagt       300
     cttattctgt cttcgactag gagagacgcg tattttcgtt ctcaggaaaa tgtaagtttt       360
     accttttgaa aacaggccgt ccccgatggg gcggtctaat cctttatttt ttacttttcg       420
     gtttactctg atcggctggg gggcagcaaa gtgttttgtg tcaaaattta aatccgtatt       480
     ctatcttttc atttgagttt tacctcccac ctttttttct aaatttattt attgcaatgc       540
     ctcaacccga acccacggtt gcattaattt cttaaataaa gggcaatgct ata              593
//
ID   Gypsy-3_AA-I repbase;    DNA;    INV; 7315 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AA_;
KW   Gypsy-3_AA-LTR; Gypsy-3_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7315
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 975-975 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3578-4081] - Reverse transcriptase
CC   Positions [5129-5605] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1467..2729
FT                 /product="Gypsy-3_AA-I_2p"
FT                 /translation="MAGPGDNWKEEINRYIQQALTEQMGALMDKLGPMLAN
FT                 QRTSTPAAPPSPPLPPPPPLTPPQVTASAQQYHPAPPISSYPVGEPSREQG
FT                 QLGNMQPNYRQRFYPNSIASHVSMAGEIEPTRGSQPSHDSRYRWQVPVSKW
FT                 RINFSGDTRGPTVTQFLNKVEILARNNRISDQELLSQANFFFRENSEAEEW
FT                 YFMFCSKFTTWAGFKHLLRLRFEQPNKDMVIERQILDRRQQANETFNAFLS
FT                 AIEKLAQQLTKPLSEERKLNILTENMRDCYRPFLTIYRIERIDELTTICHS
FT                 LDKSMYRTYSTHTRNRPPQVYNVEDTEQEWEEEVDQEEELNAIGQVIRKNR
FT                 ITEKSKDVPNTLPKTSPNSENNVLCWNCRQYGHFWRNCDKAKKIFCHFCGQ
FT                 TNYIAANCPNNHFFPNSQQGNENSGRL"
FT   CDS           2774..5980
FT                 /product="Gypsy-3_AA-I_1p"
FT                 /translation="MAEEHKQNEPPYSKYATTCYINTKPNRCPYIKVEILG
FT                 SPIVALLDSGASVSILSSRDVVERHGFKIKPINLMIKTADETAHNCEGVVQ
FT                 IPYTYNGTTNVVPTLLVPKISKKLILGMDFWEAFKIAPALVEGNAIQPIIG
FT                 LNETTINLMENFYADVEESIVFTVEPQGQPVVREEEVVEDTSLDLPFVEDP
FT                 ENKNVKDITTEHDLSVEDRQELNRIIDLFKKSNGGKLGRTNLIRHKIELVE
FT                 GAQPKRPPQYRCSPHIQKEVDKEVARMLELDVIEESTSDWCNPLLPVKKAS
FT                 GEWRICLDCRRINDVTKNEAYPYPDMLGILGRIERAKFFTVIDLSKAYWQI
FT                 PLEESSRDYTSFRAGKQLFRFKVMPFGLKGAPTTQTKLMNKVLGIDLEPYV
FT                 YVYLDDIIITSNSLKEHFRLLRKVAERLEAANLTISLEKSKFCQKQICYLG
FT                 YTLSDQGLAVDSTKIQPILDYPTPRTPKEVRRFIGMVSFYKQFIDRFSDLT
FT                 TPITDLLKGTKGKISWSKEADSAFLKIKSVLTSPKVLANPDFRLPFIIESD
FT                 ASDVAVGAVLVQIFEGVRRPIAFFSKKLSATQRKYAPTEKECLGVILAIQK
FT                 FRHYVEGSRFTVVTDAQSLIWLRKISAEGGSAKLVRWALKLQQYDFELLYR
FT                 KGSLNITADALSRGVLTVDLVDPEYEELKKKIISNNVKYKDFRVVQDKIYK
FT                 IVKSRFNDPRFEWKYVPTNRERIKLIKEIHDSMHFGRSKTLKKLQERYYWP
FT                 LMENEVRKYCQGCDTCKRTKYPNTNQKPLMGRQKVASMPWQTISVDFVGPF
FT                 PRSKSGNSVLLVVTDLFSKFVIIQPLREAKTKPLVSFLENMVFLLFGVPEI
FT                 LISDNGVQFKSKEFEKFLNNYHVTHWKNANYHPANNPTERVNRVIGAAIRT
FT                 YLKDDHKEWDRDIQKVAMAIRTSVHESTSFTPYFVNYGRNFISSGAEYKRI
FT                 RDTNTDISYEPVEINENLKTIFDTVKINLKKAYERYAKHYNLRSNQTLPSY
FT                 EIGEVVLKKNFFQSSKSKQFSAKLANPFSPAKVVGKIGSSCYDLEDLQGNR
FT                 LGVYHASHLQKK"
XX
SQ   Sequence 7315 BP; 2410 A; 1388 C; 1525 G; 1992 T; 0 other;
     attacaagtc aatcgtatca gttgggagtg agaggagttt caattcggtt tctttatttc        60
     gtcggattag aataggctct ggaaagggaa tccttaatgg taacctgccc accctgtaac       120
     ttgtatatat tttctgtaaa ctattctttt ggtttggttt gagtgtgctt aggtttcgat       180
     agttgggtta aggcttgaag aaaggactcg ccctgaggat tcctggccgg gtacgggatt       240
     ttcctgaaga gattttggac acgcatcttc gcggcggttt cctagccgcc tggcgcttaa       300
     gtgaaggttg tttttgccga accttatctt cccttcccag tcccgttaca tttggcgccc       360
     aaccaacgga ttggtttaac gaagttctgt aaatagtaag ataatttgag taataataac       420
     tagttgaatt aatgattttt agttggattt ggtttagtgc ttaagtgatg aattagtggt       480
     gaacacaatt atagataaat aaggtaattt tcggattttg ttttgaattg cttttcttag       540
     tgtacataat tcagctttat cctttattta aattatccat ttgatggttt ttcagatatt       600
     cctagtctaa aattaatttt tcattttttt tttctatatt ttcctcatta ttcatgtcgt       660
     tgtggaactt ttaagaatct gcaaagagag tgaaaaaaaa aagattagca aaatgcagtc       720
     gcaagaattc gatacactag attactatat aaatcccaac gacctattaa acgatgaagt       780
     tgactatgaa ttgaaaatca gatgcctatc agtagaaggg tcgcaagaaa cgaaaaggca       840
     aaggttaaga catgctcttt tggaagaagt tcgaaaacca aaaattttac gtacaaaatt       900
     gtcgattata caagagtttg aagcgatcaa ggacaaggtt caagagatca aacatgctat       960
     tcaattttat ccggagccaa agtttttttc tcgcctaaga cactgtagat tgagagtgat      1020
     gcgagcaaat gcagtaacta gagagcaaaa aaggctgaag gaagattttc tttcagagat      1080
     tgaaaatttg cttgaccgtt acggcaaccc aattgataga agaggtagtc aattgccttc      1140
     gaatctaaat tgtaatgttt ccgaggtatt gggacagaat gttgagcaaa atgcaggtga      1200
     caaatctttg ctaaattttt cccagatacc aggagtaaag cactcagcag aaattcggac      1260
     caaaattctg tagccttaga caccaatgaa caaaatgagg tgggttttct agatgaggca      1320
     gcaggagggc atgaatccgt aggaagcttg gacgaagaac taaatttgct atttactgaa      1380
     ctccgtcaca atacacaaag acaagagaac agacttcaag aaccatatta ccatacagaa      1440
     gaaatcagag tttcccaaca aaccccatgg cagggccagg ggacaattgg aaagaagaaa      1500
     tcaaccggta tattcaacaa gcattgacag aacagatggg agcattgatg gataaattgg      1560
     gtccgatgtt agccaatcaa agaacgtcga ctccagcagc tcctccatct cctccactac      1620
     ctccaccacc accattaacc cctccccaag ttaccgcttc agctcaacaa tatcatcctg      1680
     cacctccgat atcgtcatac cctgtaggtg aaccatcacg ggaacaagga cagttgggta      1740
     atatgcagcc aaattacaga caacgtttct atcctaattc gattgcttca cacgtctcaa      1800
     tggcaggaga aattgaacct acacggggta gtcaaccaag ccatgattcg cgctatcgct      1860
     ggcaggtacc agtaagtaaa tggcgaataa actttagcgg ggatactaga ggcccaacgg      1920
     ttactcagtt cctcaataaa gtagaaatat tggcgaggaa taatagaatt agcgatcagg      1980
     aattgttgag ccaagccaac tttttcttta gagaaaactc agaggccgaa gagtggtact      2040
     ttatgttctg tagtaaattc accacttggg cgggttttaa gcatcttttg agactacgtt      2100
     tcgagcaacc taacaaggat atggttattg aacgccagat tcttgataga agacagcaag      2160
     cgaacgaaac tttcaatgca ttcttgtcag caatagagaa attggctcaa cagctgacaa      2220
     agccactatc agaggaaaga aaactaaata ttttgaccga aaacatgagg gattgttaca      2280
     ggcccttttt gaccatctac cgcattgaac gtattgacga attaactact atctgccata      2340
     gcttagataa gtctatgtat aggacctaca gtacccacac tagaaacaga cctccacagg      2400
     tgtacaatgt agaagacact gaacaagagt gggaagaaga agtagatcag gaagaagaat      2460
     tgaacgccat tggacaggta attcgtaaaa acagaattac tgaaaagtct aaagacgtcc      2520
     caaacactct gcccaaaact agcccaaatt ctgagaacaa cgttctatgc tggaactgtc      2580
     gtcagtatgg ccacttctgg cgtaactgcg ataaagcaaa gaaaattttt tgtcatttct      2640
     gcggacagac taattacatt gcagcaaatt gtccaaacaa tcattttttc ccgaacagcc      2700
     aacagggaaa cgaaaattca ggaagattgt agggagcgat ctttctgatt ctctacaaga      2760
     ctccccggaa aaaatggcgg aagaacataa gcaaaatgag ccaccctatt ctaaatatgc      2820
     aactacgtgt tacataaata caaagcccaa caggtgtcca tacatcaaag ttgaaatcct      2880
     tggaagtcca attgttgctc tattagattc cggagctagt gtaagtattc taagctcacg      2940
     agacgtggtc gagagacatg gtttcaaaat caagccgatt aatttgatga tcaaaacggc      3000
     tgatgaaaca gctcataact gtgaaggagt agttcaaata ccttacacgt acaatggcac      3060
     cacgaacgtt gttcccacac tacttgtccc caaaatttca aaaaaactta tcctcgggat      3120
     ggatttttgg gaagcgttta aaattgcccc agcattggtg gagggcaatg caatccaacc      3180
     aatcattggt ttgaacgaaa ccacaattaa tctgatggag aatttctatg ctgacgtaga      3240
     agaatcaatt gtcttcacgg ttgaacccca gggacagcca gtcgtcagag aggaagaagt      3300
     ggttgaggat acaagcttag atctcccatt tgtcgaagac cccgaaaaca aaaatgtaaa      3360
     agatattaca accgaacatg acttatctgt cgaagaccga caagaattga accggattat      3420
     cgatctgttc aaaaagtcta atggaggaaa attgggaaga acaaatttaa ttcgccataa      3480
     aattgagcta gtagagggag cacagccaaa aagacctcct caatatcgtt gttcccctca      3540
     tatccaaaag gaagttgaca aagaggtagc gagaatgcta gaactcgatg tcattgagga      3600
     atcgacctcg gattggtgca atccattatt gcccgtcaaa aaggcctcag gagaatggcg      3660
     gatatgtctt gattgccgtc gaatcaatga cgttactaag aacgaagcct acccatatcc      3720
     ggacatgcta ggaattttgg gccgtatcga aagagcaaaa ttcttcacgg taatagatct      3780
     ttccaaggca tattggcaaa ttccgctgga ggaatccagt cgtgactaca cgtcgtttag      3840
     agcaggcaaa caactatttc gatttaaagt aatgccgttc gggctcaagg gagcacccac      3900
     gactcaaacg aaacttatga ataaggtttt gggtattgat ttagaaccgt acgtctacgt      3960
     ctatttagac gacattatca taacatcaaa cagtctaaaa gaacactttc gcttgttgcg      4020
     gaaagttgct gaaaggctag aagccgcaaa tttgacaata agtttggaga aatctaagtt      4080
     ttgtcagaaa cagatatgct atttaggcta cacgctttct gaccaagggt tagcggttga      4140
     cagtaccaaa atacaaccaa ttttggacta cccaactccg agaacaccga aggaagtacg      4200
     ccgattcatc ggcatggtta gtttctacaa gcaattcatt gatcgtttta gtgacttaac      4260
     gactccaata acagacttgt taaaaggaac aaagggtaaa attagttgga gcaaagaagc      4320
     agattcagcc tttttaaaga ttaagtcagt actcacctcc ccaaaggtgt tagccaaccc      4380
     tgatttcaga ctaccgttca ttattgagtc ggacgcctcc gatgttgcgg tgggggcggt      4440
     tctagttcaa attttcgaag gggtcagaag gccgatagcg ttcttttcca agaagctttc      4500
     cgcaacccaa cgaaaatatg ccccaacgga gaaggaatgc ctgggggtca tattggccat      4560
     tcaaaaattc cggcattacg tagagggttc gcgattcact gtagtgaccg atgcgcaaag      4620
     cctcatttgg cttcgtaaaa tcagtgcgga aggaggctcg gccaaattag tccgatgggc      4680
     cttgaagctc caacagtatg attttgagct tttatatagg aaaggatcgt tgaacattac      4740
     tgcggacgcc ctctcgcggg gagtgttgac cgtagaccta gtggatcctg aatatgaaga      4800
     gctgaaaaag aaaataattt caaataacgt caaatacaaa gatttcagag tagtccaaga      4860
     caaaatctac aagatagtaa agtcaaggtt caatgatcca agatttgagt ggaaatatgt      4920
     tcccacaaat cgggagagga taaaattgat taaggaaatt catgattcaa tgcatttcgg      4980
     tcgtagcaaa acgttaaaga agttgcagga gcgatactat tggccgttaa tggaaaatga      5040
     agtgagaaag tactgtcaag gatgcgatac gtgtaaaagg actaaatatc caaacactaa      5100
     tcaaaaacct ttgatgggta gacaaaaagt tgcctcaatg ccttggcaga cgatttcggt      5160
     cgactttgta ggtccgtttc cacgatccaa atctgggaac tcagttttgt tggtggtgac      5220
     agatttgttt tccaaatttg ttattatcca gcccttgagg gaagccaaaa caaagccgct      5280
     agtatcattc ttggaaaaca tggtgtttct cctctttggt gtgccggaaa tactaatttc      5340
     ggataacgga gtccagttca aatccaagga attcgagaaa tttttaaaca attaccatgt      5400
     cactcactgg aagaacgcca attatcatcc ggcgaataac ccaacagaga gagttaatcg      5460
     ggtaattgga gctgcgatta gaacatactt gaaagatgac cataaggaat gggatcggga      5520
     cattcagaag gtcgccatgg ctatcaggac atcagtccac gaatcaacgt cattcacacc      5580
     ctatttcgtg aactatgggc ggaactttat aagttctggg gcagaatata aaagaattag      5640
     ggatacgaac actgatatca gctacgaacc ggtagaaatc aatgaaaacc ttaaaacaat      5700
     atttgacaca gtcaaaatca atttgaaaaa ggcttacgag cgttatgcaa agcattataa      5760
     tctgcgttct aaccaaaccc ttccttcata tgaaatagga gaagtggtgt taaagaagaa      5820
     cttctttcaa tcgagtaaga gcaaacagtt ctcagcaaag ttagcgaatc cattttcacc      5880
     agcaaaagtt gtcggtaaaa tagggtcttc gtgttatgat ttagaggatt tgcaaggaaa      5940
     tcggttaggc gtttatcatg cctcacattt acaaaagaaa taatcggcca accaattaca      6000
     agctatgtct gatgctaaag gcacagttac taagagattt ttccattaaa acacgtactt      6060
     acggttcaac cattgcaggg ggactagctt caaaaacaac atgcatacta caagcagtcc      6120
     catcctcgcg tttcacggtt atccaattag aattcatagt tccaaaccta aaaaaaaaaa      6180
     caactcgtta gtaatgtcgt tggtatacag ctatgtacag gatcagctga agattctatg      6240
     tttacatcct agacaatgaa taatgctaaa acaccaagaa cagggaaaac cgttcacaat      6300
     attaagctat gtatttgaca acaacgaaac aaaacactgt gagtttacgg caggctcttg      6360
     aacgtaaaca ctgtaaatat taattgtaaa tagtccagtt aactagtcta taaagatgaa      6420
     ttgaaatcta gttcattttt gcatcaggtg attgatttag taggtacact tgatgtgacg      6480
     ctgggcacaa taattggttt agcttcgttt agttcactag cactttttcg acagtaattt      6540
     tttttcacac ttacaacatt tgcagtaact ctggtagcag cttgtagttg gttcatccgt      6600
     tcctcgcaat acatcctcaa aattcgcctt agtttctggt tattttttaa tttgactccc      6660
     actttcttgc aataacttta gttacagagc acagaaccaa aacaaaacaa ccgattattc      6720
     agtgacaggt caaaccgcaa cttatcgttt aatgagcatc ggccaaaatt acagtagagg      6780
     ctgttgaagt agggatacca tgatagtaaa tacgatgtgg agcggtgatg ttccagtagt      6840
     gataatttgg agttgagttt tgttactgat tttatgtcag tagtatttgt tcggataaat      6900
     ctgaaacgta cataaagtaa gttggttaga atgatgtgtc gagaaaattc ttgacggctc      6960
     cttagggaga tcatggtgcc gccttcgcgc acaggtgttt attctagtga tcctagaatt      7020
     ggtctgaata gacgttgata ttagacgtgg taggtctgtt aagttgaatg aaaactataa      7080
     tggtatcccg atataagaga attaaattaa ctgtaaataa taaatcaaca aaatatatac      7140
     actaggaata tctatatcta tatctatatc tatatatgca ctattttgat cagttgagtc      7200
     gaaccaaatc aactaacaac aatagaaaaa taaattgcta ctgttttatt ttttacaaaa      7260
     aaaaaataaa ttcagatatc ttcatttatt ttttttaacc gttggtaggg ggtaa           7315
//
ID   Gypsy-3_AA-LTR repbase;    DNA;    INV; 1285 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AA_;
KW   Gypsy-3_AA-I; Gypsy-3_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1285
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 976-976 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1285 BP; 417 A; 266 C; 267 G; 335 T; 0 other;
     tgtaacaatg ttacaaaatc ccttagtcct aaatcctgtg attcaaaaca aaaagaacat        60
     aaattaaatt taaataaata tatggattcg aaaatgagcc tttactgtca gagtcggagt       120
     tgcgttccag gtctctgggt acatgaacgt atagggcaat ccgataaatg aggccgatct       180
     ttaaaaatta gttctctttc aaaatcgggc cccgacaata accgaacgaa taggaacggg       240
     tcgcggttaa ggctgacatg gcaaaaatct gcgttgaaga ttctctttca ttccaactgt       300
     ctacggatag agacgcattg tggcgaagtt taactagtga tctaagtagg gagaagctag       360
     aagaattgtg gctgtggagt tgaatagttt ggaaaagtaa aggctgtcta agtggaagaa       420
     aaaaaactgt gaataattta gaatgttaaa attatatttg cagataaatt aaaagtgaac       480
     ttgaaaaaaa ctcgatattg tccgagctaa agttagacac gtgttccgag taaggtttgc       540
     acaaaagaat gtattgttct ctttataaaa gatttttttt acattcaggc ctaagccgct       600
     cgcttgtttt ccttaaaaca gcattcttac ttaattaagt gcaaatttgc ataaaacgaa       660
     caggtaattg gtaaaaatgt tttttgatgt aacctgaata gtaatttcaa atcgtttgaa       720
     gatcccttca aacacaaggg tgcaccccta ggattcggag cgtgcgacaa aatccacttg       780
     atcgtttggg caatgctgtt tggacgatga ggccgcgacc gagcatatgt cgtgcagcat       840
     aatgaactac atcgtcattt ggtgactccg ttaactcacc acccgggtta gccaggccac       900
     aacccaccaa accgttcgcc aacgaaaacc gatagagggc cgccgtcaac atacaagcga       960
     tcggttgcat gcaagaccga caatcgaaac ttgcaagact ccaccttcgt tccatacaca      1020
     tgaccggtca taggagccac tttgaccccc ttccgtcatc agtaagtgca cttaccatcc      1080
     gccgctggac ctcgagggac ctctccgcca tcaccggtag ctgcaaacac aagtaaggtc      1140
     gaccaaattt gtacactact aacccctaga caatgtaaat gcaaattgag atcagaagca      1200
     aaatgtttta aatgggtatc cttttgagcc actgccatac ggatcgaaaa agagaataaa      1260
     agtgcatggc actacgtttt tatca                                            1285
//
ID   Gypsy-3_ACe-I repbase;    DNA;    INV; 4580 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-4580
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 730-730 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
SQ   Sequence 4580 BP; 1258 A; 1232 C; 1273 G; 795 T; 22 other;
     tggcgcccga acagagaccg gcacccgacg gtcagagaga ggcgcaaacg cgacgaagag        60
     ctggatatac acgcttagta aagaccggct gatagacgag ttacaagtta aggctagaaa       120
     ccgaaggggt gctcgatgac ctgcgtcgac gacttagtca atatatggac gagcatcccg       180
     aggagtttag cggttcgccg gccgataccg gtaaattcat gcagttaggc gcgccgagcg       240
     gtgccaccac caccgatccc tctgcgacag aattcgatca tggaaatcag gccggccgaa       300
     tctgatccgg atacccgccc tgccaaggtc ataaatcaga tgaggaaatg ggggttacac       360
     ttcgaaggga aggacccgtg ggcgcttctc gagcgwatcg aggagctgaa aaaggactac       420
     gagtataccg accagcaatt cttccggggg gacgcgttaa ccggtgcagg gggaatcgca       480
     ggaaatggga gacttggaac gattttgtcg ctcattttaa gagcacgttc ctaccgcaag       540
     tcgacgcgta ccaattgtta gaggacgtgc acgcgagaaa acagaaaccg tgggagccat       600
     atgtcaagta tcgccttgac tgcattgatg gccgcgccgg catcacgtca gaatcgcagc       660
     aactcgaata tttatatcgg aacatcatag ctacatatca gtggcgtatc agacgccaag       720
     acgtgagatg tacgcgagat ttggaaaggg aggccgcggt ttgcgaacga ttgctggcat       780
     tagagaaagc cgaaagcggc ggctccgaca cgcgatgctc ccaatgctgc cgcgatatac       840
     gatcgcaccg aatgcgmtgg cggtgcaagc agaggggacg cgcttcgaat gccgccgaat       900
     gccgagaaag ttttgctcgc aatgcggaaa ggacggagta atgagcccga ctgtcatccg       960
     ccccgggaaa cgcgggtcgg agaagccccg atcgcgctct accctccatg taacctatca      1020
     cccgcgaccg cacgtgatcg tactcctaag agagcaaacg ttcgaggccc tgctagacat      1080
     cgggtccgag gctttgttcg tcaatcagga tacggtcgaa atcctgcagg agttaggcga      1140
     gccattgata atggagaagg gcgagatcac cttggccaac ggaaaacgat tccggggcgg      1200
     ggagtggaga tcgccggtac tccacgtgtc caggtgatgc caatcctggg cagtccgctt      1260
     aggggtggac gcgtgggcga agatcggccc agtcatttcc ggcaccactg aaatgcagct      1320
     cccggaacaa tacgaacatt acggccgcgg caggagggct acgaaaacgt accgcgggag      1380
     aggataacca tgggagttcc tcgacaccga gcttccgtta ttcgaagaag tcacaggccc      1440
     cacccactta atacagcatt cgcttaaaac cgaacacccg cctgattaaa caaagatatc      1500
     gaccacgaaa cccgacgatg caagcaatca ttaacaccga agaatgcacg agsgggagta      1560
     atggacctta tagtccatgg agctcgccag ttgtatacaa taatcaagaa gaaagaggga      1620
     aaaacagatt ttgtatagac ttccggcgta aatgamsgaa cccgacgctt atccactgcc      1680
     gcagataacc gcgacgctcg ataaactgag gggagcacga tacctgacaa cactggacct      1740
     gaagagcggt tactgacagg ttccgctcac gcctgagagc aaagcgctga ccgcgttcac      1800
     aattccggag aagggactat accaattccg cgtaatgccg gcctacattc ggctccggcg      1860
     acgttccagc gattattagc atactaggat cggaactcga gccaaacgta ttcgtgtatc      1920
     tcgacgacat tattgtcatc acgcgatctt tcgaagaaca tctgcaaatc ctccgagaag      1980
     ttttggacgg ctacggagag cgagattgag actaaatccc gacaaatgcc ggttttgcgt      2040
     ggaccgtctc aaatacctcg gccacatcgt gaaccaagac ggcataagaa cgatctccga      2100
     aaaggtgcgc gcaatcgcag actggcccga accccgaacc gtcaaacaga tcagacaatt      2160
     cctgggcgtg gcatcctggt accgccgctt catacaggac tttgctatta ctgccacgcc      2220
     attgactgca ttgaccaaga agaacgcccg atggaagtgg ggacccgagg aggggagccg      2280
     ccttccgaag actgaaagac attctgacat ccgcgcccgt actagcttgc cccgacttta      2340
     cgaagcgatt ttatctacag acagacgcaa gtactacaga tctggaggcc gtgctcactc      2400
     agaacttctc ggagggggag agggtgatag catacgcgag ccgaacgttg aatcaggccg      2460
     agcaaaattg cagcggagct ggaatgcctg gctgtcgtct ggggcatacg caggatgcgg      2520
     gactacctgg agggatatcc gtttaccgtc ataaccgatc accaatcctt gcgttggctc      2580
     cagaaattag aaacgccctc aggacggctg gaacgctagg ccttcgaact ccagcaatac      2640
     gacctcgaga tccgtccgga aggggactta aaccgggtcg ccgatgcgct atcgcgacag      2700
     ccagtaaccg cagccgccgt cattatgctg agcccgatgt cggcgcacgt acctctcagt      2760
     acgcgaccgc cccaacgaac atcccgatta tgaaatacgc gacgggaagc tatatcgcca      2820
     tctacttcac gatctcgatt tcaaggagac cactgcggag tcacagtgga aaatctgcgt      2880
     tccgaaggaa agccgggcgg aaattctata caataatcat gatgatgcga ctggggtctg      2940
     ggcatcgcaa aaacattgcc cggatttact attggccggg aatgatgggg gagatcgtgc      3000
     ggtacgtgcg gggctgccag aattgcctga cgcataaggt ggcacaggcg aaaccggcgg      3060
     gaacgatgca tgccacgaca gtaaaccggc cgtggcagca agtgacgctg gatttagtgg      3120
     gaccgttacc gcgctcaagg aagggccaca cgtggttgct caatatgcag gacagattta      3180
     caaagtggat agaactacgc cccctccgcc gcgccaccgc gtcactaagc atcgccgagg      3240
     ccataatctt ccgacacgga tgcccggaca tcatccgtaa tggcacgcaa ctccgctcag      3300
     cgcaactcga aagactacta aaaacgtaca atatccgaca tatacacacc gatcacgctc      3360
     cgcagtgcaa tcccgtcgaa cgcacaaacc gcaataaaaa cgatgctagc gcaatttgtg      3420
     gatcgcaatc ataagaactg ggacgaacgc ttgctagaga tccaatttgc gtttaacatc      3480
     gcgcgccacg aggccacaga gtacacgccg gcgtacttaa atttcgggcg ggaattagcc      3540
     cgaacgcccg ggaagcgcga acgggacccg cgccgccgtc cgataccacg cgccggtatc      3600
     tcgaagaggc ccaggagctg gttagaataa atttagctcg cgcatttcag agacagcaga      3660
     agtattatga cctgcgacgc ccatggaagc cggcaatagg agagtgggta tacaagcgag      3720
     aatacccgct ctcaaataaa gccgccgcgt tcaacgcaaa gctagccaag aaattcgaag      3780
     ggccgctcga ggtgcgtcgc gtggtgtcac cgatcgacaa tagtcgactt gcgcgcgaag      3840
     agcggacgct ggtacaggca catacatgtg caagacctaa agccccgaac aagccaccga      3900
     ataacgatga gaacaataaa aggggagacc gataccgacg gggactccga gagggaagac      3960
     ggtgacatcg gggaagagag tggggcggaa agcggccatg acctcgcgcg gtaaaaacaa      4020
     agaaggatct agaaaaccga atatattcgc acggaatata atcatacsaa atcaacggtc      4080
     tcttktcgtc tcgagwttac gatggagaak gatcccggag agataagcct catcgacgtg      4140
     atcaacgcaa tcatgggscg ccggaggwmc asgacccaga gaatcctggm atggagggac      4200
     tcgttggggc agcmgcctca gwacagaacg tcaacgcatc agccagtgcc tatccgccac      4260
     cgagaccacg gaaagcaccc acagcggggt acgagatcag ascsggascg aggagccaag      4320
     ggcatggctc aatcttccac cgccacggcc ggaaacgaat cggaggctgg taaccaagca      4380
     gccaacaggc ctgcaaccag cgtgggtccg ctaccacccc caccaatwcc cgtgsaggta      4440
     gagccaagat catagaggtt ccacatttct cggcccatgc accccgccaa tttaaggcga      4500
     tacagacaca aatggaacgc ttcaacggta cgctcgatac gaaagcwgta aatgtgaatt      4560
     cactactagg aagggggtga                                                  4580
//
ID   Gypsy-3_ACe-LTR repbase;    DNA;    INV; 1044 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-1044
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 731-731 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1044 BP; 217 A; 309 C; 261 G; 256 T; 1 other;
     tgtaacgatg cgtcctcgga aaaccgcatc gttcccggcc aaacatcagc cggatgccgc        60
     tgtattacat gcagcgatgc gggcgcgaat tttttaaaaa cmgcaaattc acaggtacca       120
     gccgaagttc cgcgagaacg accgaacgct gccgagcgct accccgcgac agatatctgt       180
     accgtcacgc atgtgggggt accgctcggc gagaatatac gaaccgaacc gagcttcgcc       240
     gaatccgcgg cgctgccaaa aatccgtcat ataaaaggcc gcggattttc acaaagaggc       300
     tttttcttgc tccgattcct actagacgac cagatcctac cgactcgata gcaatcctga       360
     tccgctacga gcattttcct gccgcaagat tccggccgac atcgtgttca gggtgaagcg       420
     gacttcgcct ccgttgggcg ttctcaacac acttggaagc cgattctcgc tgtatccgcc       480
     gagtagacga gacaaggggg tagggcggtc tctgcctcca ttgggcgttc ccgatagtcg       540
     aaaggcatca tccgcaacct tacacacgac gcgatcggca agagcaaagg ggtggagtgt       600
     tctccgtctc cgtcgagtgt tctcggccgc cggtcgcgcc cgcgcctaca ctcaggtgtg       660
     ccataggcac attcgaatct cgcgactcgc gtttcgcgct gccgcgccgc gatcgtattg       720
     gtgtgtaccc gcgccgcgct agcattcgtc ccgcgttacc gcgccgtgac accagggcgc       780
     accagcgcct ggatccgtgt tttcacatta ccgcgtgcag cgagcgctat cattattcta       840
     ttgtatctta ttttgttgta ttctaaatta tctgttagta ttatcgtgct gtatataata       900
     aagcgtgttt gtatttcgtc ttgctacata attgcattcg tttctctgta agcgccttct       960
     ctctccgcaa cgaacctctt tcgttccctg cccgactaat ttgtccgacg agctattccg      1020
     cgcaacggaa gtcaggttgt ttca                                             1044
//
ID   Gypsy-3_AEc-I repbase;    DNA;    INV; 5121 BP.
XX
AC   .
XX
DT   10-OCT-2011 (Rel. 19.03, Created)
DT   10-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AEc_;
KW   Gypsy-3_AEc-LTR; Gypsy-3_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-5121
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 663-663 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2523-3065] - Reverse transcriptase
CC   Positions [4086-4562] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           942..4931
FT                 /product="Gypsy-3_AEc-I_1p"
FT                 /translation="MTRILHGLMDLDTLTPKDSEQDGELDEDASDEGTADE
FT                 QDDEREEERSNKESENNLEENHSTRGSQVNMKFAMTYRDVQDSIKTFTGKD
FT                 TYPVERWISEFEDAANLFGWSELQKLVFAKKSLAGPAKMLIDSEGIIKSWK
FT                 KLKEILRDEFIDKINSAQIHDMLVRRRLKRDETVQEYYYVMKEIAARGKIE
FT                 AEALMKYVIDGIPEDAQGKIILYGAKKLTEFKEKLKVYEAIRKKNTERMRT
FT                 REKNSMQKKTEEARKPTTPKSGEKEQETDVRCYNCGGKGHKAKDCKKKELG
FT                 KKCFKCQKYGHTAKLCNASDDSEAVADKKTAVINTVTDSSSGRMFKQITIN
FT                 GVRVNALIDTGSQITVMRKDVYDKMKLDKLRGNSICLTGFGKNEVHSLGCV
FT                 NIIIEVDADEYPCVVHVVPNEATNSSVIIGSDFLAMTEMTINNDGITIRRA
FT                 TPAQLLTQINVIEKQPLDIGDATDPKVREEVETIVEAYQVNKCKTTDVSMR
FT                 IVPKDERPIFQKPRRLPAPEREIVENQIAEWLNDGVIEKCTSEYASPVVVV
FT                 RKKDGSPRVCIDYRKLNRVIEKDGHPLPLIEDLLDKLEDACVFSTLDLKNG
FT                 FFHVSVEKESRKYTAFVTPNGQYQFLKVPFGLCNSPRVFQRYINAAFWDLI
FT                 RQNIVLLYVDDLIVPAANEQEALERLRIVLKTASDYGLQINFKKCQFVKRT
FT                 IEFLGHVVEGGKIYPSQEKVKAVIDYPEPKELKDIQSFLGLTGYFRKFIPS
FT                 YSTIAKPLSDMLRKDQSYNFDDKARNAFIQLKTILTQNPVLKIYHSRHETE
FT                 VHTDASIDGYGAVLLQRSDEDNLLHPVYFMSKKTKKEERNYTSYELEALAI
FT                 VEALRKFRVYLLGIQFKIITDCAAFQRTMSKKELSTRIARWALVLEDYDYI
FT                 IEHRPGTRMKHVDALSRHPVMTIAKSPIIPQIRSQQASDEEIQAIKEIVKD
FT                 KSYKNYHISGDLLYKFQDGRDLLVIPRTLELDVIRTIHEKGHMAAKRTEER
FT                 IRQEYFIRDLRSKVERHIASCVQCILTNRKEGRQEGYLHPIPKPDVPLHTY
FT                 HADHLGPLDTTNKNYNHILAIIDSFTKFVWLYPTKSTTAREVTSRLDVQKQ
FT                 IFGSPKQIVTDRGTAFTSQEFKEYCQSEGIEHVTITTGLPRANGQVERLNR
FT                 AIISILSKLSIEEPAKWYKHVDKLQRILNSTFNRSVNATPFDLLFGVKMRD
FT                 ETDLKLREVIEQEFRSKFEEERNEIRARAKEQILKVQSENCKTYNLRRKKA
FT                 TEYQVGDLVAIKRTQLGPGRKLRAKYLGPYLIEKVKPNDTYDVIKSGSHEG
FT                 PVSTSTCAEYVKPWNTVN"
XX
SQ   Sequence 5121 BP; 1884 A; 869 C; 1245 G; 1123 T; 0 other;
     cttggatcaa tcttatttcc tacaaatttg ggggctcgtc cgaggataag agctggtgag        60
     agacaaaagg ggagaaaaga cgaaaagacg aaaagacgaa aagacgaaaa gacgaaaaag       120
     aaaagacgaa agaaaagacg aaaagacaaa gacgaaaaga aagacgcaag acgaaagacg       180
     ataagacgag agagagaaaa gacgaagaaa agacgaaaaa agaaaagacg aagacgaaag       240
     acgataagac gggagaaaga aaagacgaag gaaaagacga agagacgaaa agacgaaaag       300
     gcgcaagacg gagaagacac gacgacgaga aagaggaaag aagaaggaag acgacattca       360
     aatctcgaag acgttaagaa tccgaaagac atcgagtgtg caactacaag gtggcgcagc       420
     gacaccagaa atacattggc aagactgtga atgcgtcggt aacgccaaca tcgagagggc       480
     agtgacaata cgacgcgggt gagcgcgcga cagtagcgct ggtaacgaca tcgaaagtgt       540
     ggtggcagga ctgcacgacg taagtgaacg tgagtcggta gtcttgagtg tacgcgaaca       600
     agacggtgca acaacagtga gcgcgcgacg gtaaacactt gtcacattgc gtaaagtgtg       660
     cagagacaag atgaataatc tcgcgcaaat tgaaccaatc aggcagaaag atacgtacgg       720
     cgtcgaccgt tgccgtgacg gctttacata gatttatctt cgaaaaggaa ggtgatcgaa       780
     aaaatagaca aagactcaga gactttgagg gcttcacttt caagaaagac acgacgggat       840
     acgtgaacaa aatagaagcg gcgcgaaaac tttcgatcgg cgacttgata tcctgctgta       900
     acattcttgg tttagagtac ggcggaaaca gagaagagat aatgacacgc atattacatg       960
     gtttaatgga tttagatact ctcacgccta aagatagtga acaagacggt gaattagacg      1020
     aagatgcgag tgacgaggga acagctgacg agcaagacga cgaaagagag gaagaaagaa      1080
     gcaacaaaga gagtgaaaat aacctcgaag agaaccactc taccagaggc agtcaagtga      1140
     acatgaaatt cgcaatgaca tatcgagacg tgcaagactc aattaaaact ttcactggaa      1200
     aagatacata tccggttgaa agatggatat ctgaattcga agatgcggct aacctgtttg      1260
     gatggtcgga attacagaag ttagtgttcg caaagaaatc actagccgga cctgctaaaa      1320
     tgctcatcga cagcgaaggc attatcaagt cgtggaagaa attaaaagaa attctacgag      1380
     acgaatttat agacaaaata aacagtgctc aaatacacga tatgctggtc agaagaagac      1440
     tgaagagaga cgaaaccgtg caggaatatt attatgtgat gaaagaaata gctgctagag      1500
     gcaaaataga agcagaagca ctcatgaaat acgtgattga tggaattccg gaagacgcac      1560
     agggcaagat catattgtac ggagctaaaa aattgacgga attcaaggag aagcttaaag      1620
     tatacgaagc aattcggaag aagaatactg agaggatgag aacgagagag aagaacagca      1680
     tgcagaagaa gacagaagaa gcgaggaaac caacaacacc aaaaagtggc gaaaaggaac      1740
     aggagacaga cgtgcggtgc tacaattgcg gcggtaaagg acacaaagct aaagactgca      1800
     agaagaaaga attaggtaaa aagtgtttta agtgtcaaaa atacgggcat actgcaaagt      1860
     tgtgtaacgc gtcagacgat agtgaagcgg tagcggataa aaagacggcg gtaattaata      1920
     cggttactga ttcatcgagc ggtagaatgt ttaaacaaat cacgataaac ggtgtgcggg      1980
     ttaatgcgtt aattgatacc ggcagtcaaa tcacggtaat gcgcaaagac gtttacgata      2040
     aaatgaaatt agacaagcta cggggaaata gtatctgttt aaccggtttt ggaaaaaacg      2100
     aagtgcattc attgggttgc gtaaatataa ttatagaagt agatgctgat gaatatccgt      2160
     gtgtagtgca cgttgtgcca aatgaagcta caaattcaag cgtcataatt ggtagcgatt      2220
     ttctagcgat gacggaaatg accatcaata acgacggaat aactatacga agagcaacac      2280
     ctgctcaatt gttaacacaa atcaacgtga tcgaaaagca accgttagac attggtgacg      2340
     cgacggatcc gaaagtacgc gaagaagtag agacgattgt tgaagcgtat caagtaaata      2400
     agtgtaagac aacggacgtg agcatgcgta ttgtaccaaa agacgaaagg cctatttttc      2460
     aaaaaccgcg acgattaccg gcacctgagc gcgaaatagt cgaaaaccaa atagcggaat      2520
     ggctaaacga cggggtcatt gagaagtgta cgtcggaata cgcgagtcca gtagtcgttg      2580
     taagaaagaa ggacggatca ccgcgtgtat gtattgatta taggaagtta aatcgagtca      2640
     tagaaaagga cggtcatccc ttaccactaa tcgaagatct actagataaa ttagaggatg      2700
     cttgtgtgtt tagtacgtta gatctgaaaa atggattttt tcatgtatcc gtagaaaaag      2760
     agagtcgaaa atatacggcg tttgtcaccc cgaacggtca atatcaattc ttgaaagtcc      2820
     cttttggatt atgtaattcg ccgagggttt tccaaagata cattaatgct gctttctggg      2880
     atttgattag acaaaatata gtgttgcttt acgtggatga cttgatcgtg ccggcagcaa      2940
     acgaacaaga agcgttggaa cgattgcgaa tcgtattaaa aacagctagc gactacggtt      3000
     tacaaattaa ttttaagaag tgtcaattcg tgaaaagaac aatcgagttt ctaggtcatg      3060
     tagtagaagg gggcaaaatt tacccttccc aagagaaagt caaagccgtg atagattacc      3120
     cagagccgaa agaattaaaa gatattcaaa gctttcttgg attaacgggt tacttcagaa      3180
     agtttatacc ttcgtattct acgatcgcga aaccgttgag cgacatgttg cggaaagatc      3240
     aatcgtataa ttttgacgat aaggctcgaa acgcgttcat acaattgaag acgattttaa      3300
     ctcagaatcc agtactgaaa atatatcatt cgcgacacga aacggaagta catacggacg      3360
     caagtataga cggttatgga gctgtactcc tacagcgttc agacgaagac aacttattac      3420
     acccagtata ttttatgagc aaaaagacta aaaaagagga aaggaattac acgagttacg      3480
     aattggaggc gcttgcgata gtagaggcac ttagaaaatt ccgagtgtat ctgttaggaa      3540
     ttcaattcaa aataattact gattgtgcgg cttttcagcg aaccatgagc aaaaaagagt      3600
     taagtacacg tattgcgaga tgggctttag tgttagagga ttatgattac atcatagagc      3660
     acagaccggg aacccgtatg aaacacgtcg atgctttgag tcgacatccg gttatgacga      3720
     tagcgaaaag tccaattata ccacaaatta ggagtcaaca agcaagcgat gaagagattc      3780
     aagcgataaa agaaattgtc aaagacaaat cgtataagaa ttatcacata agcggcgatt      3840
     tattatataa atttcaagac ggtagggatt tacttgttat tcccagaacg ctagaattag      3900
     acgtaattcg aacgattcac gagaaaggac atatggcggc aaaacgtacc gaagagcgta      3960
     ttcggcagga gtattttata cgcgatttaa gaagtaaagt agaacgacac attgccagtt      4020
     gcgtgcagtg tatattgacg aatcgcaaag aaggtaggca ggaaggatat ttacatccca      4080
     ttcccaagcc tgatgtgcca ttacacacat atcacgccga tcatttaggg ccgttagata      4140
     ccactaataa aaactacaat catattctcg ctattattga tagttttact aaatttgtat      4200
     ggttgtatcc gactaaatct accacagctc gcgaggtcac aagtcggtta gacgttcaaa      4260
     aacaaatatt cgggagtccg aaacaaatcg tgacggatag aggcacagct tttacctccc      4320
     aagagttcaa ggagtattgt cagagtgaag gaattgaaca cgtgacaatt accacgggat      4380
     tgccaagggc aaacggacaa gtggaacgtt tgaatagagc gatcatatcg atactttcca      4440
     agttatcaat cgaagaacct gctaaatggt acaaacatgt agataaattg caacgtatat      4500
     taaactccac gttcaatcgt agcgtaaatg cgacgccttt cgatttacta tttggcgtaa      4560
     aaatgcgcga cgaaaccgat ctgaaactac gcgaagtaat agaacaagaa tttcgatcga      4620
     aatttgagga agagcgtaac gaaattagag ctagagcgaa agaacaaatt ctgaaagtgc      4680
     aatcggagaa ttgtaagaca tataatctca gacgtaagaa ggctacagaa taccaggtgg      4740
     gagacctagt agcaatcaaa cgaacacaat taggtccagg ccgaaaatta cgagcgaaat      4800
     atttaggacc atatctaatt gagaaggtta agcctaacga cacatacgat gtgattaaaa      4860
     gcggatctca cgaaggacct gtaagtactt ctacttgcgc tgaatatgtt aaaccctgga      4920
     atacagttaa ttaaaagtaa tcaattccat ttttgtaaga cgtaatgttg agttaaagta      4980
     atcaattttg tttgtaagac gttaattata agtcggcaat attatttttg taagacgttt      5040
     taaatagttt attttgtagg atgtaacgtt aagttaacag ctggcgtcgt gcgggacgca      5100
     cgattgtgca gaatggccga g                                                5121
//
ID   Gypsy-3_AEc-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   10-OCT-2011 (Rel. 19.03, Created)
DT   10-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AEc_;
KW   Gypsy-3_AEc-I; Gypsy-3_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 664-664 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 243 BP; 67 A; 47 C; 70 G; 59 T; 0 other;
     tgtaggaaga gtatatgttg tgtttacgaa ttcttattta gttcgcgcgt ttccgactat        60
     gacgatatgc gctagagtat cagcgcgctt gcgcaagagc gaaaaggtag aggaaggtga       120
     ggacaaagag acagttgtaa gacggcgaga cacgtgtgtg gcacgacgaa gcgttgaagt       180
     gcgaatagcg attctctcct gaattgtcgg ccagcaatac tggctcaccg aacatttcca       240
     tca                                                                     243
//
ID   Gypsy-3_AnFu-I repbase;    DNA;    INV; 5521 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5521
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2889-2889 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           518..1759
FT                 /product="Gypsy-3_AnFu-I_1p"
FT                 /note="gag."
FT                 /translation="MSDLHKILSARRDPVSDSEYSDSVDSVDSGSLAHIPI
FT                 VNFDITLGTMSLDESQTQTQANNILTQLMSQINILNENIQQIAAKQESYEN
FT                 SLHRLTNPENTCSQNSFTMPVLSTPAVGDVFRIPDPIKSIPSYDGNRKQLQ
FT                 SWIIVVENTLSIFKNLVSSQVYNIYVQSILNKISGNAKDALCLAGNPSDFN
FT                 DVKKVLIEAFGDRQELATYKAQLWSNKQSDDMSIHSYYKKTKEIMLNIKTI
FT                 AKQNKIYSDSWSAICIFIEEDVLAAFIAGLKHPYFGYAQAAKPENIESAYA
FT                 FLCKFTANEKISSRLIEVKNQKTAIPNRTMNSYAANAIGKNIFTNTQGTTQ
FT                 PNVQTNFPRKTQYKAPTEKMEVDTSTKSRFTTNKNFLNNNEIPLLEAEASS
FT                 CEEDDILTNFWEVATRTKVS"
FT   CDS           1714..5199
FT                 /product="Gypsy-3_AnFu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="YLDKFLGSRYKNQSFVDFLPYLNCVNTKTKRNLKLLI
FT                 DTGSNKNILRNGIIPEHLTVPINNTRVKNITGEHPIDRKGTINLLGFGLPK
FT                 QTFYLVDFHNFFDGILGSKYLAENKSVINYAKEAIIINEVTIPFSKYFPSK
FT                 KLYNNFITINTLKNGDWLVPSFQILYKNCLIKPGLYKAEKGKSTVSVLSLD
FT                 ENQPTDLRTYDLNVNNFETITPIPIRNCKQIDNRIIESLIRTEHLSPLEKE
FT                 SLVNTILQNSSVLLKEGEKLSSTSVIKHKIITKDNEPTYTKSYRFPHHFKP
FT                 EVDKQIQEMLDNEIIVHSSSPYSSPIWVVPKKKDASGKKKIRVVIDYRKLN
FT                 EKTISDRYPIPQIDEILDNLGKSSYFTTLDLKSGFHQIQMDPAYQEKTAFS
FT                 TGHGHFEFTRMPFGLKNSPATFQRMMNHILTGLVGSICFVYLDDIIVIGSS
FT                 LTSHLQNLDTVLKRLANFNLKIQLDKCEFLKKESYFLGHIITSEGVKPNPE
FT                 IIDKISNWKLPTTQTQLKQFLGLTGYYRKFIRDYAKITKPLSNCLKKDAIV
FT                 NYENENFLKAFNELKNIITSDQVLAYPNFDLPFILTTDASNFALGAVLSQV
FT                 QENKERPIAFASRTLNKTECNYSTTEKEALAIIWAIRKYKPYLYGGKFTLV
FT                 TDHKPLVFIKTSFKNSKILNWRLELEDYNYEVKYKQGKTNVVADALSRIPQ
FT                 EINTNETLAQNHCNVKMQSVEITNSETTNSCETIHSAEDSSDHFMHMTKRP
FT                 INYYRNQLIFKISDTDPSIVKETPFPNFHRIIVTKQNFEMEDIRRHLQSIH
FT                 NGKQTAIHAPENMIQLVQDTFKNNISIKGHFILTQTIVEDVPDTQKQDILI
FT                 TTEHNRAHRGISEVECKLRRAYFFPNMQRQIKLFTNNCEICNIHKFDRKPY
FT                 NIMISPRPITNKPLERIHMDIYIINNTSFLSLIDSFSKHLQMLHIKNKNII
FT                 QVQRKLTQYFAQYGLPKEIITDHETTFRSTQLKNYLGSLRVALKYASCSES
FT                 NGQIEKTHSTITEIYNTNKSKYEGYDVKSMIRIAVALYNDTIHSATKFTPN
FT                 ELTFNQTNQDNPAQILETANRLFCDAKHNLDKAVKRQLNRNIKKNSPPSIT
FT                 ESADVFVVPNIRTKTQPRAIKTKAKNVKEKTFENIRGVKRHKSKIKRLKTV
FT                 RIE"
XX
SQ   Sequence 5521 BP; 2058 A; 1009 C; 925 G; 1529 T; 0 other;
     ggcgcagccg gtagttgtga gtacaatttg aaaatttaca ggtaaaaaca gtgcgaaaga        60
     agattttaac tagtgaaagt gaatctttga ataagtgcac ccgaaattcg tttgtgttaa       120
     tttaaacgtg atttcatctc cgttcgaccg ttaaagttcg ggtgatttgc ggtgccgccg       180
     tcctgtaaac acgtgcttac aacggagtct tttgtgtgtg accgttgact ccagaacaaa       240
     acaataacga ggtgtttcgt attggaattt aattttagcg cactactaga tagacgcaaa       300
     atttgcaagc taaatcgcta tacgaaatag acgatttttg ccttttgttc cacttgagca       360
     cattttgagt taacctcaaa taataaaaag agctaagtac tccgtgtacg ctacagattg       420
     agcgcactat tagatagacg caaaatctag gcacaaaacc gcactactag atagacgggc       480
     tgtgtaattt tttttctttc gtagcgtgtg cgtttgtatg agtgacctgc ataagatatt       540
     atccgccagg cgtgatcccg tcagtgatag tgaatacagt gacagtgtcg actctgttga       600
     ttccggtagt ttagcacata ttccgatagt aaattttgat attacgctag gaacgatgtc       660
     tctcgacgaa tcgcaaacgc aaacacaagc gaataatatt ttgactcaat taatgtcgca       720
     gataaacatt ttaaatgaga atattcaaca gatagccgca aaacaggaat cgtatgaaaa       780
     ttcactgcac aggttgacga accctgaaaa cacgtgttct caaaactctt ttacaatgcc       840
     tgttctgtct actcctgctg ttggtgatgt ttttcggatc cctgatccaa tcaaatcgat       900
     cccttcgtat gatggaaatc gtaagcagct acagtcctgg ataatagtgg tagaaaacac       960
     gcttagtatt ttcaaaaatt tagtgagcag ccaagtgtat aatatttacg ttcagtcgat      1020
     attaaataaa atttctggta atgctaaaga cgcgttatgt ctagcaggaa atccttcaga      1080
     tttcaatgat gtgaaaaaag ttttgataga agcttttggc gatcgccaag aactagccac      1140
     atacaaagcc cagctttggt caaataaaca aagtgatgat atgagtatcc attcgtatta      1200
     caaaaaaaca aaagaaataa tgcttaacat taaaacgatc gcaaagcaga ataaaattta      1260
     tagtgatagt tggtcagcta tttgcatatt cattgaagaa gatgtgctag ccgcattcat      1320
     tgccggacta aagcatccat attttggtta cgcgcaagca gctaagcctg aaaacattga      1380
     aagcgcctat gcattcctgt gcaaatttac cgcaaatgaa aaaatttctt cacgattaat      1440
     cgaagtgaaa aatcagaaaa ctgctatacc taacagaaca atgaacagtt atgcagcaaa      1500
     tgcgattggt aaaaatattt ttacaaatac acaagggaca actcaaccaa atgttcaaac      1560
     caattttcct aggaaaactc agtacaaagc tccaacagaa aaaatggaag ttgatacatc      1620
     aactaaaagt cggtttacaa ccaataagaa ctttttgaat aataacgaaa taccattgct      1680
     tgaagctgaa gcttcaagtt gcgaagaaga tgatatcttg acaaattttt gggaagtcgc      1740
     tacaagaacc aaagtttcgt agactttctt ccatatttaa attgtgtgaa tacgaaaacc      1800
     aaaagaaatt tgaaattgtt aatagacact ggatccaata aaaatatttt gagaaatgga      1860
     attattccag aacatttaac cgtgccgata aataacacac gtgtaaaaaa cataacgggt      1920
     gaacatccca ttgataggaa gggaacgatt aatctccttg gttttggatt gccaaaacaa      1980
     acgttctatt tagtggactt tcacaacttc tttgatggaa ttctgggttc aaaatattta      2040
     gcagaaaaca aatctgtaat caactatgca aaggaagcta ttatcattaa cgaagttact      2100
     attccttttt ccaagtattt cccatcgaaa aaactgtaca ataatttcat tacaatcaat      2160
     actttaaaaa acggagattg gttagtacca tcctttcaaa ttctgtacaa aaattgttta      2220
     attaagccag gtttatataa agctgaaaaa ggcaaatcaa ctgttagcgt tctaagtttg      2280
     gatgaaaatc aaccaacaga tttaagaact tatgatttaa atgtgaacaa ctttgaaacc      2340
     attactccta ttcccatacg gaattgtaaa cagatagata acagaatcat agaatcttta      2400
     attcggacag aacatctttc accgttagaa aaagaaagtt tagtaaatac aattcttcaa      2460
     aactcttcag tgttgttaaa agaaggagaa aaactatctt ctacaagtgt tataaaacac      2520
     aaaataatca ctaaagataa tgaaccaact tatacgaaat cttaccgttt cccgcaccat      2580
     ttcaaaccag aagtagacaa acaaattcaa gaaatgcttg ataatgaaat aattgttcac      2640
     tctagcagtc cttattcatc acccatttgg gtggtgccaa aaaagaaaga cgcctcaggc      2700
     aaaaaaaaaa taagggtcgt tatagactat cgtaaattaa atgaaaaaac aattagcgat      2760
     cggtatccta taccgcaaat tgacgagatt ctcgataact tgggaaagtc atcttatttc      2820
     acaacattag atttaaagtc cggcttccat caaattcaaa tggatcctgc ttatcaggaa      2880
     aaaacagcct tttctaccgg acatgggcac tttgagttta ctaggatgcc atttggcttg      2940
     aaaaattcgc ccgcaacttt ccagcgaatg atgaaccaca tactaactgg acttgttggc      3000
     tctatttgct ttgtctattt agacgacatt attgttattg gcagtagttt aacttctcac      3060
     ttacaaaatt tagataccgt tctcaaaaga ctagcaaatt tcaatctgaa gatacaatta      3120
     gataaatgtg agtttctgaa gaaagaatca tattttctag gacacataat aacctcagaa      3180
     ggtgttaaac ccaaccccga aatcatagat aaaatttcta actggaagtt gcctacaact      3240
     caaacacagc ttaaacagtt tttagggtta acaggttatt atcgaaaatt tattcgcgac      3300
     tatgcaaaaa ttactaaacc tttgtctaac tgcctaaaaa aagatgcaat agtaaactat      3360
     gaaaacgaaa actttctgaa agcctttaat gaacttaaaa atatcattac ctcagatcaa      3420
     gtattagctt atcccaattt cgatttacct ttcatattaa caacggatgc tagtaatttc      3480
     gcacttggcg cagttttgtc gcaagtgcaa gagaacaaag aaaggccaat agcatttgct      3540
     agcagaacgt taaacaaaac agaatgcaat tattcaacca ccgagaagga ggcgcttgcc      3600
     ataatttggg caattagaaa atacaaacca tatctgtatg gaggcaagtt tactctcgta      3660
     actgatcaca agcccttagt ttttataaaa acatcgttca aaaactcaaa aatactcaac      3720
     tggcgtttgg agttagagga ttataactac gaagtaaagt acaaacaagg caagacaaat      3780
     gttgtggccg atgcccttag tagaataccc caagaaatca atacgaatga aacattagct      3840
     caaaatcact gtaacgttaa aatgcaatcc gtggaaatta caaattctga aacaactaat      3900
     tcatgtgaga ccattcattc agctgaagat tcaagtgatc atttcatgca tatgacgaag      3960
     aggcccatta attattaccg aaatcagttg atattcaaaa tatcagatac ggatccatcg      4020
     attgtaaaag aaaccccatt tccgaatttc cataggataa ttgtaactaa acaaaatttc      4080
     gaaatggaag atattaggcg tcatttgcaa agtatccata atgggaagca aactgcaatt      4140
     catgccccag aaaatatgat tcagctagta caagatacgt tcaaaaataa tatttctatc      4200
     aaaggtcatt tcatattaac acaaacgata gtagaagatg taccggatac acaaaagcaa      4260
     gatattctca ttactacgga acataacaga gcgcatcgcg gcatttcaga agttgaatgt      4320
     aaacttagac gagcatactt ctttccaaat atgcaaaggc agataaaact attcaccaat      4380
     aactgcgaaa tatgcaacat tcataagttt gatcgtaaac cttataacat aatgatatct      4440
     ccacgaccaa taaccaacaa gcctttagaa aggatacaca tggacatcta tatcattaac      4500
     aatacaagtt tcctgtcttt aatagactcc ttttctaaac atcttcaaat gctacatatc      4560
     aagaataaga atatcattca agtacaaaga aaacttactc aatattttgc gcaatacggt      4620
     ctaccaaaag agattataac ggatcatgaa acaaccttta gatcgactca actgaaaaac      4680
     tacttgggtt cattaagagt ggcattaaaa tacgcgtcat gctcggaatc aaatggacag      4740
     atcgaaaaaa cacatagcac aatcaccgag atttataata caaacaaaag caaatatgaa      4800
     ggctatgatg taaaatccat gataagaata gcagtagcgt tatataatga tacaattcat      4860
     tctgccacta agttcacacc aaatgaacta acgttcaacc aaacaaatca ggataaccca      4920
     gcacagattt tggaaacagc aaatcgcctt ttttgtgacg caaaacacaa tttagataaa      4980
     gcggttaaac gacaactgaa ccgaaatatc aagaaaaatt ctccaccatc tattacggag      5040
     tctgcagacg tattcgtagt tccaaacatc aggacaaaaa ctcaaccaag agcgatcaaa      5100
     actaaagcta aaaatgttaa agaaaaaacg ttcgaaaata tcagaggagt aaaaagacat      5160
     aagagtaaga taaagcgact caaaactgta agaattgaat gatctctttg aaattacttg      5220
     aaagttaagc acatattgta tctgtttgaa atgttatgta ttccgtttgt aaactacaga      5280
     aataagaatt agtcatattt ccacacttta attttgtaaa gtcttgaaag tataccgaca      5340
     aatttatctt ccttcttcgt taagcgaagc agtaatgatt agggattaga tagggctagt      5400
     attaagatta cttattataa cgtttatgaa aaaatgatac gtaaaaaaaa aacaaaatga      5460
     tgagcctcac gaacaactgc atccgtcaga cgagggcgtc tcgactctta cccccggagg      5520
     a                                                                      5521
//
ID   Gypsy-3_AnFu-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-208
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2955-2955 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 208 BP; 59 A; 48 C; 51 G; 50 T; 0 other;
     gttatatgcc aaggagaagg catatcggta ctggaccaga gcagaggact aggcgttata        60
     tacaggcgtt acgacactca taactgcatg tgcgcacgtg tgtgtgtgtc aaagaaacag       120
     catcgtacga tcggtagccg gtagaatcgt cctctttttg tgcgaatcat caagcaataa       180
     acacctcatc gagcctcgac tcatcatt                                          208
//
ID   Gypsy-3_AnMe-I repbase;    DNA;    INV; 4461 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4461
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6815-6815 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           499..4458
FT                 /product="Gypsy-3_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MATNQPQLGDETNASVHHAAQEEAHFATPSTTPQSEM
FT                 TNRVPPPTAPQNIRDEMEISAVKLPPFWTNSPSTWFIQAEAQFENAGTKTE
FT                 RTKYAHLLTAMPPETLEKVIDIVQNPPAHNRYTYLKEALLTRLSISEEQRI
FT                 SKLLYNAEMGDSSPSEFHRRLVQLAGSSSDISDKLIFRLWLGRLPKSIEIA
FT                 MISLGKTNLKEILPIADKIWEASKGAMVNACSVKQESSNENSEVFALKKEV
FT                 QELKGLMEQMRISRGRDRSIERNRMRNRSASRGKVGTPRKPFCWYHYKFGS
FT                 AATKCVEPCNFYNNEAQKKRINAADTAGSVSVFTNSSRLFLYDEESKLTXL
FT                 IDSGADVSVIPNSIFGILAKSNDTLVAANGTPIPTYGVKFLKVSLGLRRSF
FT                 PHTFVLAAVNHPIIGADFLKRYGLLVDLSNKRLVDPLTSLSTKASIAKVDT
FT                 PSPKLFAVSDVYTNLLKEFPSLMEAPDFNKPIKHHIVHHIQTKGQLPVAKP
FT                 RRLDPVRHKAAHAEFQHMMELGICRPSSSPVSSPLHMVAKTDNDWRPCGDY
FT                 RRLNAATIPDRYPIPHIQNFAMNLHNCSFFSKLDIIKAYHLIPIAPEDVYK
FT                 TAITTPFGLFEFLRMPFGLRNAGPTFQRFVDSIFQDLDYVYVYIDDILIGS
FT                 TSQEEHLVHLREVLKRLSENDVKLKHSKCVFGVPQIEFLGHKVNSQGITPT
FT                 KDKVEAITNFPQPTSLKQLQRFVGMVNYYHRFIPRIAEIMRPLHKHIAMYS
FT                 KSKTLPWSWTSDCETSFEALKSSISNATLLNHPRDNTQLNITTDASNVAVG
FT                 AVLQQENNGCWEPLAFFSKQLTEAEQKYSTFDRELLAIYLAIKHFRYFVEG
FT                 RDFFVLTDHKPLTTAISSKAEKTPRQARHLDYISQFTADIRYIKGDSNIVA
FT                 DTLSRVGEASTINSLNYEELVEGQKHDIELKKCLENQSSDSRYRLNKLNVN
FT                 NQGIYFETSTGINRPYIPEPFRFSVFKDQHNLSHPGIRATRKLITSKYFWP
FT                 SMNKNITEWTKACENCQRAKINKHMHSPLAQFDLPAGRFDHIHIDIVGPLP
FT                 ISDNKSYLLTVVDRYTRWPEAYPIEDITAETVAKTLVSEFVSRFGCPINIT
FT                 TDRGRQFQSKLFMELAKLLGSHHISTTAYHPQSNGLVERFHRHLKGSLMAN
FT                 DISERWTERLPLVLLGIRVSYKEDLKCTPAELVYGQNLRLPADFVSPSDRN
FT                 IPDVTDYLARLRNAFSKVSPTSPRVTETKVYVAKELETCNKVYVRIDRVRE
FT                 GLEPPYEGPYDVVKKLRKFFVIERNGKQXSVSIDRLKPAYQLNRVDRKVNF
FT                 SLREFRGE"
XX
SQ   Sequence 4461 BP; 1405 A; 960 C; 923 G; 1169 T; 4 other;
     ttggtgaccc cgacgtgatc aagagagatc acataatcgc acactctttg ttaagaacac        60
     taaatctacg attcatttaa cgtggcgatt tgtttcgtat agtacgccag ccttctaatt       120
     aacgtgagcg tcgtgaccgt acatgtgttg tacaagcgcg aataaaacgt acgtagtatc       180
     gcgatcgggc gtgtgttgaa gtacgtatgt tcaaaagtac ggaaaataaa cattgcgtgt       240
     gagttctagt gaaaaaagaa agcaggatta ttttctagaa tcctttgtgg attacacgtc       300
     atccggttac gctcacccca caacgacaca caccaacact cagcacacgt ctggtgacag       360
     aaacgtttct tcaacgcgtt cacatacaca cgcaccatct tgcagtaaat gttacacaca       420
     ccatcaagag aatcacattc gtctgggttt cgttcggagc gttattcctt tgccgtataa       480
     aaggatctga acagaaacat ggctacaaat caaccacaac tcggagacga gacgaacgcg       540
     tcggtacatc atgcggctca agaggaggca catttcgcaa ctccatcgac gacacctcaa       600
     tccgagatga cgaaccgcgt gccgccacct accgcaccac agaacatccg ggatgagatg       660
     gagatcagtg ctgtgaagct gccaccattt tggaccaact caccaagtac atggtttatt       720
     caagcagagg ctcagtttga aaacgcggga accaaaaccg agcgcaccaa gtatgctcat       780
     cttctaaccg ccatgccgcc cgagacgctg gagaaagtga tcgacatcgt ccagaatcct       840
     cctgcgcaca accggtatac gtatttgaag gaagccttgc tgacgcgctt atcgattagt       900
     gaggagcagc ggatctcgaa acttctctac aacgccgaga tgggagatag cagtccgtcg       960
     gaatttcatc ggcgtctcgt gcagcttgca ggatcatcca gtgacatttc agataagtta      1020
     atttttcgtt tatggttagg gcgactacca aaatcaatag aaatagccat gatttcacta      1080
     gggaaaacta accttaaaga gattctacct attgcggaca aaatatggga agcatcaaaa      1140
     ggggcgatgg tgaatgcatg tagcgttaaa caagaatcaa gcaacgagaa tagtgaggta      1200
     tttgccctta agaaagaggt tcaggaatta aaaggcttaa tggaacagat gcgaatttct      1260
     cgcggccgtg atcgatcgat tgaacgaaat cggatgcgca atcgtagtgc atctcgcggc      1320
     aaagtaggaa cacctagaaa acctttttgt tggtaccact ataagtttgg cagtgccgct      1380
     acaaaatgtg tggagccatg taatttctat aacaatgaag cgcaaaaaaa acgaataaac      1440
     gctgcagata cggcgggatc tgtgagtgtt tttactaatt caagccgcct ttttctttat      1500
     gacgaagagt ctaagctaac akttcttata gatagtgggg ccgatgtttc tgtcattcct      1560
     aattccattt ttggcatttt agcaaaatcg aatgacacgt tagtcgcagc aaatggaact      1620
     cccattccaa cttatggggt aaaattctta aaggtgtcct tggggctacg tcgttctttt      1680
     cctcatactt ttgtgcttgc tgcagtgaac catccgatca ttggggcaga tttcctcaaa      1740
     cgatatggtc tattggttga tctgagtaac aaacggttag ttgatccact cacctcttta      1800
     tctaccaaag cgagtatagc caaagttgat actccgtccc caaaattgtt tgcggtttct      1860
     gatgtttaca caaatttgtt gaaggaattt ccatccttaa tggaagcccc ggatttcaac      1920
     aaaccgatta aacatcatat tgtccaccat attcaaacca aagggcagct tccggttgca      1980
     aaaccacgca gattagaccc agtaaggcat aaagctgccc atgcggaatt ccagcatatg      2040
     atggaattgg gcatctgccg tccttcttct tcacctgtgt catctccatt gcacatggtg      2100
     gctaaaacag acaatgattg gcgcccgtgt ggggattatc ggcgtttaaa cgctgccaca      2160
     atacccgata gatacccaat tccacatatt cagaactttg ccatgaattt acataattgt      2220
     tcattttttt caaaattaga tattataaaa gcttatcact tgataccgat tgctccagag      2280
     gatgtgtaca aaacagcgat tactactcct tttgggcttt tcgaattttt aagaatgcct      2340
     ttcggtttac gaaatgccgg tccaaccttt caacgttttg tggattcaat tttccaggat      2400
     ctagactatg tatatgttta catcgatgac atcttgatag gaagcacctc acaggaagaa      2460
     caccttgttc atttgaggga ggttctgaaa agattgtccg aaaacgatgt aaaactaaaa      2520
     cactccaaat gcgtttttgg agtaccacag atagaattcc ttggccacaa ggttaatagt      2580
     cagggcatca cccctactaa ggataaggtc gaagcaatca cgaattttcc tcaaccaaca      2640
     tcactaaaac aattacagcg gttcgtgggg atggtcaatt actaccatag atttatccct      2700
     cgtatcgcag aaattatgag acctttacat aagcacatag ccatgtactc caaatcaaag      2760
     actcttccat ggagctggac atcagattgc gaaacttcat ttgaagcgtt aaaatccagc      2820
     atatccaacg ctactttgct taaccatccg agagacaaca cwcagttaaa tatcacaacc      2880
     gatgcttcca atgtcgcggt cggtgcagta ctgcaacaag agaataacgg ttgttgggaa      2940
     cctctagcat ttttctcaaa gcaattgaca gaagcagaac agaaatattc tacttttgat      3000
     agggaattgt tagcaatata ccttgcaatt aagcatttcc ggtattttgt agaagggcga      3060
     gatttctttg ttctcacgga ccataaacca ctcacaacgg ctatttcatc aaaagctgag      3120
     aaaactccaa gacaggctag acatctcgac tacatttctc agtttactgc ggatatcaga      3180
     tacataaaag gggatagcaa tattgttgct gacactttgt cacgcgtagg agaagctagt      3240
     accataaatt ctctcaatta tgaagaatta gtagagggcc aaaaacatga tatagagctg      3300
     aaaaaatgtt tagaaaacca atcaagtgat tcaaggtata gacttaacaa attaaacgta      3360
     aataaccaag gtatatactt tgagacatca acaggtatca accgtcctta catccctgaa      3420
     ccatttagat tttccgtttt taaggatcaa cacaatctat cacaccccgg gattagagcc      3480
     acgcggaaat taataacatc aaaatatttc tggcctagta tgaataaaaa cataacagaa      3540
     tggaccaaag cttgcgaaaa ttgccagagg gctaaaatca ataagcacat gcactcacca      3600
     ttagcacaat ttgatcttcc agctggcaga tttgatcata ttcacattga tatcgtggga      3660
     ccgcttccaa tttccgataa caaatcgtac cttttaacag ttgtagatag atacacgagg      3720
     tggccggagg cttatccaat agaagatatt acagcagaaa cggtagccaa aacattggtg      3780
     tcagaattcg tatcaagatt cggttgtcct attaacataa caacagatag aggtagacaa      3840
     ttccagtcaa aactgttcat ggagctagct aaactattag gaagtcatca tatatcgaca      3900
     acagcatacc atccwcaatc caatggtctt gtagagagat ttcacaggca cttaaaaggc      3960
     tcactaatgg ctaacgatat ttctgaacga tggaccgaac gattacctct cgtgttgtta      4020
     ggaatcagag tcagctataa ggaagatctg aaatgtactc cggccgaatt agtttacgga      4080
     cagaatttgc ggttaccagc agatttcgtt tcaccatcag acagaaatat tcctgatgtt      4140
     actgattact tagccaggct tagaaacgcg tttagcaaag tatctccgac atcacctcgc      4200
     gtcacagaaa caaaggttta cgtagctaag gaattagaaa catgcaacaa ggtgtatgtc      4260
     aggatagata gggttaggga aggcctcgaa cctccatatg aagggcctta cgacgtggta      4320
     aagaaactca ggaagttttt tgtgatagag agaaatggta agcaamtgtc cgtatcgatt      4380
     gataggctta aaccagcata ccaactaaat agagtagata ggaaagtaaa tttttcactc      4440
     cgcgaattta ggggggagta g                                                4461
//
ID   Gypsy-3_AnMe-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6806-6806 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 224 BP; 64 A; 40 C; 65 G; 55 T; 0 other;
     tgtagagacc gtgaacggtt tgcgagattt agagacaggg aacggttctg gaactttcct        60
     gaggaacaag gatgagaaca tttcttctct ttcacgcaag ggtcaaggag gatataaaaa       120
     gccgcgatcg gccggagcag atcagaaggt tctggctcgg cttactgtgt gtatcgtcgc       180
     ggaattgaaa gagaaataaa ggctcacagt tgtgttacac ttta                        224
//
ID   Gypsy-3_AnSt-I repbase;    DNA;    INV; 5232 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5232
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 788-788 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..1623
FT                 /product="Gypsy-3_AnSt-I_1p"
FT                 /translation="MWRDPTAEAFSSDSDSISNDSGSLSHIPTNVVIPIEN
FT                 LSLADNMEQIQVQLEQLKQLVQTLAVSHEQQSQKILSLENKSSNNQASSSS
FT                 EPHGANLSANLDAFYKIPDPIKAVPVYDGNKKQLFAWLKTAESVLNIFKNN
FT                 VHPAVYRMYEDAISNKIQGRAKDALCLEGNPADFQEIKDILTKAFSDKYDL
FT                 SMHMSQLWHNKMNNSANLKTYYIHTKELVQKIKQIARQTDKYQESWSAINQ
FT                 FIDETSLAAFIAGLQEPYFGHVQAARPEDLEEAYAFLCKLKSNEVTAQNLN
FT                 VRKIAETKHFSNSEGSQKRFDNNANRSKPTNQASSSSSMNRSTRNVHSSNT
FT                 NAPVPMETETSRTRLTLNRKNLNTNETFDTNLTRSFEDEEEDITVNFWETT
FT                 ETNLPI"
FT   CDS           1569..5021
FT                 /product="Gypsy-3_AnSt-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="GGRHYSKFLGDYGNKSTNLDFLPYIIGTHPKTSRQFK
FT                 LLLDSGANKNILKPGIIQSLQSVDTVIKNTSGRHKVSRKGSINLLGPEFPD
FT                 QMYYEYDFHKFFDGIIGSQYLAECDSVISYSEETVTIAGNSIAFRKYFPSK
FT                 KLFYHIVTIDTLENGDWFVPCHQVLCNNIIIEPGLYKSENNKSTVKIISKS
FT                 HIAPTITTSFHLNVNNFETINPIPLNIDEPIDKKTIEMLIRVDHLTPYEKE
FT                 NLLDLILKNQQVLLKSNEKLSSTTVVKHKIITKDDEPTYSKTYRFPNHFKK
FT                 DVEEQILEMLEDGIIVPSNSPYSSPIWVVPKKPDASQKRKIRVVIDFRKLN
FT                 EKTINDKYPIPQIEEILDSLGKSTYFSTLDLKSGFHQIEMDPAHREKTAFS
FT                 TAQGHFEFTRMPFGLKNAPATFQRAMNHVLAGYIGSICFVYLDDIIVTGHS
FT                 LTSHLENLDKVLKRLAACNLKIQVNKCEFLKRETEFLGHLITQDGIKPNPD
FT                 KIQKILDWKIPTNQKEIKQFLGLTGYYRKFVKDYAKLSRLLSKCLKKGTKV
FT                 TYDEEDYKKAFEELKQIIASDQVLAYPDFEQPFILTTDASNFALGAVLSQI
FT                 QDNRERPIAFASRTLNSTESNYPATEKEALAIIWAVKKFKPYLYGKKFTLI
FT                 TDHKPLTFIKTSFKNSKILNWRLELENFDYEVKYKEGKTNVVADALSRRID
FT                 PDKPIRDINASSISDSPRSGTNQSSGTIHSADRSNDHYVHYTTRPVNLYRN
FT                 QLIFKLGDTDSIVQETPFTNYQRTVITKNNFDSCNVSQLLGMYHNGKQTAI
FT                 FAPENLMQVIQETLSNHSFSKGHFVVTTHMVEDVTSSEKQNFLVTSEHDRA
FT                 HRGICEVEQQLRRSYFFPCMLKMITRYVNSCEICSCNKYERKRYNIKISPR
FT                 PITRKPLDRVHMDIYIINSCSFLSIIDSFSKHLQMLYLKNKNIVQVQKKLA
FT                 SYFSTIGLPKEIITDHETTFMSVQLKSYLSSLGVLLKYASCSESNGQIEKT
FT                 HCTITEIINTNKYKYERADTRTLTKIAVTLYNNSVHSATKFTPNELLFNNT
FT                 NNRNLLEISRNAQVLYDEAYKNMSKAAKQQTNKNDTKCVPPTLAEEQAVFV
FT                 IPNIRTKMQPRATKILVKNVQDKTFENARGVKRHKKKIKRLKI"
XX
SQ   Sequence 5232 BP; 1899 A; 948 C; 919 G; 1466 T; 0 other;
     ggcgcagccg gtattaggtg attagaaaaa agaacagtgc tagtgagtga caaaaagctc        60
     acgtagtttg tccggatttg tagctactac cagatagggc ttcatattca tctccgtgcg       120
     attccaaaag tgcggacgat ttgtggcaac gccgttttct tttcatcgaa aggaccatcc       180
     tcttccctct ttcatcatcc agtgtcggat tgaggttagg atcctcacgt gttcttcaac       240
     actaacgcac aggtaagcaa acttttagtt tttaatatct tttgtttgtc cgagtgacag       300
     agaaaaaaaa acttttgcta ccgtgcttcg aatagtaact attgaataga gctattcgat       360
     ttctttaatt tgagtgtatt aaaaacgcgt tcttagagag acgtttttaa ccgacacatt       420
     tttatgtgga gagatccaac ggctgaggct ttttcttcgg attccgattc catatcgaac       480
     gattccggta gcctctcgca catacccaca aacgtagtta ttcctatcga gaatttatcc       540
     ttagcagata atatggaaca aatacaagtg caacttgagc agcttaagca gcttgtgcaa       600
     actctcgctg tctctcacga gcagcaatct caaaaaattc tctcattaga gaacaagtct       660
     agcaataatc aagctagtag tagtagcgaa ccgcatggcg ctaaccttag tgctaatttg       720
     gatgcctttt ataaaatccc agatccgata aaggcagtac cagtgtacga tgggaacaaa       780
     aaacagcttt ttgcttggtt gaagacagct gagagtgtat tgaatatttt taaaaataac       840
     gtgcatcctg ctgtttatcg catgtatgaa gatgctatta gcaataaaat acaaggtcga       900
     gcaaaagatg cgttgtgctt agaaggaaat cctgctgatt ttcaagaaat caaagatatt       960
     ttgacgaaag ctttcagtga taaatatgat ctatcaatgc acatgagcca actgtggcat      1020
     aacaagatga ataacagtgc aaatttaaaa acttattaca tacacacaaa agaattagta      1080
     caaaagatta aacagatagc taggcaaacc gataaatatc aggagagttg gtctgctata      1140
     aaccaattta tagacgaaac aagtctagct gcatttattg cagggttgca ggaaccatat      1200
     tttggtcatg ttcaagcagc acgccctgag gatttggaag aggcatatgc atttttatgc      1260
     aaattgaaat ccaacgaggt gacagcacaa aatttgaatg ttaggaaaat tgcagagacg      1320
     aagcattttt caaacagtga aggatcccaa aagcgttttg ataataacgc caatagatca      1380
     aaacctacaa atcaagcatc gtcatcgagt tcaatgaacc gaagcacgag aaatgtgcac      1440
     tcttctaaca caaatgcccc tgttccaatg gaaactgaaa ccagcagaac aagactaaca      1500
     ctaaatagga aaaatttaaa tacaaacgaa acgtttgata cgaacttaac tcgatcgttt      1560
     gaagatgagg aggaagacat tacagtaaat ttttgggaga ctacggaaac aaatctacca      1620
     atttagactt tcttccatac ataataggaa cacatccgaa aacttcacga caatttaaat      1680
     tacttttgga tagtggtgca aataaaaata ttttgaaacc gggtataatt cagtcattac      1740
     aatctgttga tacagttata aagaacactt caggtcgtca taaagtttca cggaaaggat      1800
     caataaactt gcttggacca gaatttccag accaaatgta ctatgaatat gacttccata      1860
     agttttttga tggaattatc ggttcacaat atttagccga atgtgattct gttatcagct      1920
     atagtgaaga aacagtaacc atcgctggta actcgattgc attccgcaaa tattttccat      1980
     ctaaaaaatt gttttatcac atagtaacaa ttgacactct ggaaaatgga gattggtttg      2040
     ttccgtgcca tcaagttctt tgtaataata ttataataga gcctggatta tataaatcag      2100
     aaaacaataa gtctaccgta aaaatcataa gcaaatctca tattgcacca actattacga      2160
     caagttttca tctaaatgta aataattttg aaaccattaa ccctatccca ttaaacattg      2220
     atgaaccaat tgataaaaaa acaatagaaa tgttaataag ggttgaccat ttgacacctt      2280
     atgaaaaaga aaaccttttg gatttaatat taaaaaatca acaggtactc ctcaagagca      2340
     atgaaaaact ttcttctact accgtagtta agcacaaaat tataactaaa gacgatgaac      2400
     caacatattc caaaacgtac cgatttccaa atcattttaa aaaagatgta gaggagcaaa      2460
     tcttagaaat gctcgaagat gggataattg ttccctccaa cagcccatat tcttctccga      2520
     tttgggttgt tcccaaaaaa ccagatgcct ctcaaaaaag aaagatcaga gtcgtaatag      2580
     attttcgaaa actaaatgaa aaaactatca atgataaata ccccattcct cagatagagg      2640
     aaatcttaga tagtttggga aaatctacat acttttccac attagatctc aaatctggtt      2700
     ttcaccagat agaaatggat cccgcacatc gcgaaaaaac ggctttctct acagcacaag      2760
     gacacttcga gtttacgaga atgccttttg ggcttaaaaa tgccccagcg acttttcaac      2820
     gtgcaatgaa tcacgtatta gcaggataca taggatcaat ttgttttgtc tacttggacg      2880
     atattattgt tacaggtcat agtttaacat cacatttgga aaatttggat aaagtcttga      2940
     aaagattagc agcttgcaat ttaaaaattc aagttaacaa atgtgaattt ctaaaaagag      3000
     agacggaatt tttaggtcat ttaataactc aggacgggat aaaacctaac cccgataaaa      3060
     ttcaaaaaat tctagattgg aaaataccca cgaatcaaaa ggaaattaaa cagtttctcg      3120
     ggctaactgg ttactatcgc aagtttgtga aagattatgc caagctaagt agactacttt      3180
     caaaatgcct gaaaaaaggc actaaagtca cttatgatga agaagattat aaaaaggcat      3240
     ttgaagaatt aaaacaaatt attgcttctg atcaagtcct cgcttatcca gattttgaac      3300
     aacccttcat tcttaccaca gacgctagca atttcgcctt aggagcggtg ttgtctcaaa      3360
     ttcaggataa tcgtgaaagg cctatagcat ttgcaagtag gacactgaat agcaccgagt      3420
     ctaactatcc agccacagaa aaagaggcct tagcaataat ttgggcagtc aaaaaattca      3480
     agccttatct ttacggaaaa aagtttacgt taatcacgga tcataaaccc ctcacattca      3540
     taaaaacttc ttttaaaaat tcaaaaattc tgaattggcg tttagagctg gaaaattttg      3600
     actacgaggt taagtataaa gaaggaaaaa ctaatgtagt agcggatgcg ttgagtagaa      3660
     ggattgatcc cgacaaacca atacgagata ttaatgcttc ctccatttca gattcaccaa      3720
     gaagtggaac aaaccaaagt agtggcacga ttcattcggc ggatagatcc aacgatcact      3780
     acgtccacta cacaacaaga cctgtgaatt tgtatcgtaa ccagctaata ttcaagttgg      3840
     gagacacgga ttctattgta caagaaacac cattcacgaa ttatcaacga actgtaatca      3900
     ctaagaataa tttcgattca tgtaatgtta gtcagctttt aggaatgtac cataacggaa      3960
     agcaaactgc gatttttgcc ccagaaaatc ttatgcaagt gatccaagaa acacttagta      4020
     accattcctt tagtaaagga catttcgtag ttacaacaca tatggtagaa gacgtgacaa      4080
     gctctgagaa acaaaacttt cttgtaacat ctgaacatga tagggcccat agaggcatat      4140
     gcgaagtaga gcaacagcta aggagatcgt atttttttcc ttgtatgctt aaaatgatta      4200
     cacgttatgt gaacagttgt gaaatttgta gttgtaataa gtatgaacga aaacgttata      4260
     atattaagat ttcccctaga ccgatcaccc ggaaaccatt agatcgcgtt catatggaca      4320
     tttatataat caatagttgt agtttcttat ctatcattga ttcattttct aaacatttgc      4380
     aaatgctgta tcttaaaaac aaaaatattg tgcaagttca aaaaaaatta gcttcttact      4440
     tttctaccat aggattacct aaagaaatta taacagatca tgagaccaca ttcatgtctg      4500
     tccaactaaa aagttatctt tcatcgttag gagttttgtt gaagtatgca tcttgctcag      4560
     agtctaacgg ccaaattgaa aaaacacact gcacaataac agagattata aatacaaata      4620
     agtacaaata tgaaagagcg gacacacgaa ccttaacaaa aattgctgta actctttaca      4680
     ataatagtgt acactcagca actaaattta cgcccaacga attgttgttt aacaacacta      4740
     acaatagaaa tcttttagaa atatctagaa acgctcaagt gctgtatgat gaggcgtata      4800
     agaatatgag caaagccgcc aaacagcaaa ctaataaaaa cgatacgaaa tgtgtccctc      4860
     caacattagc agaagagcaa gcagtattcg ttatacctaa cataagaact aagatgcaac      4920
     ctagagcaac aaaaatacta gtgaaaaacg tacaggacaa aacatttgaa aatgctagag      4980
     gcgttaagag acataagaaa aagattaaga ggttaaaaat ttaaccagta aggaatagcg      5040
     taaaaagaat tcgaatgaaa ccattttttt tttttttttt ttttgtatac ggtacttaaa      5100
     ttaaggaacg caaattcatt gtatgtcaat tgtattagga taaggaatta ggctaggaaa      5160
     ccatttgaac tttttttttg aatactgtcg ttaatattcg gacgaggacg cccgatctct      5220
     accccccgga ga                                                          5232
//
ID   Gypsy-3_AnSt-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.02, Created)
DT   23-NOV-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-189
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 777-777 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 189 BP; 66 A; 41 C; 32 G; 50 T; 0 other;
     aataatagat aggtgatgaa tattatattt cattataata tttcatcaca ccttatttag        60
     aaaaccttag ccaaatgaca tctgtgcatc gtcagtcggc tacacacaga caggctcctc       120
     gacgggccat cattcttagt ccgaccacga acgaataaag acagggaact agaaacacga       180
     cttgtaatt                                                               189
//
ID   Gypsy-3_BM-I repbase;    DNA;    INV; 2607 BP.
XX
AC   nscaf2937;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_BM_;
KW   Gypsy-3_BM-LTR; Gypsy-3_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2607
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 981-981 (2010).
XX
DR   Genome; nscaf2937; Positions  529564  532170.
XX
CC   Positions [1720-2196] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..2592
FT                 /product="Gypsy-3_BM-I_1p"
FT                 /translation="MPRKGAKEDEECFAEPAPQISFCELEKSMTAFSGDDA
FT                 YGVDTFIKDFEDIANLMQWTGIEKLIYAKRLLKGTAKLFLRSLTGTTTWEL
FT                 LKTGLKEEFGLHLNSAAIHKTISNRKMKPGETYQQYFLQLKELAVLGNIED
FT                 DALMEYIIDGIPDNEMNKTILYGASNIKEFRKKLDLYAEIKKKCRTSNKAY
FT                 NQSTTSKPTTSGWKKPLPKKRCFNCGDLDHESSGCSKGIKCFRCNDFGHKS
FT                 TDCPKNIKKTLEIKCNKENDSQAPYKKVLINNVMVKSLIDTGSDVNLMNES
FT                 TFTQIHGDTCNYHPDLVQSLTGIGDCEVHTRGSCTPRIEIDGCQCEATFYI
FT                 IEDDKIPVDVIIGNPILQDIELSFKSGVISAKRILQVTMLEDQTEEPMIIG
FT                 NFKYKDQIEKILTEYDPGKCCKESKVELKVLEKEHYDDFMIEAGILWKIKD
FT                 GKKLMVVPKKMQNEIIRKNHDKGHFGLIKTEELISRNYYFENMKDKIKSVL
FT                 ENCLECILISHKKGKSEGFLHAIDKGDIPLSTYHIDHLGPLTSTNKNYKYI
FT                 LTVVDGFTKFTWIYPTKTLSTDEVIDKLKIQQQTFGSPQRIISDRSTSFTS
FT                 NTFKEFCETEGILHHIITTGQPRGNGQVERVHQIIIDALSKLSADDPTKWY
FT                 KHISNIQRCLNGSFQRSIKMSPFELLTGVKINNKNEAIYNLINEENLKFFC
FT                 DEREDLRKKARENIQKIQDENRRNFNRRRRKPREYEVGNLVAIKRTQFVQG
FT                 YKLHPRYLGPYEVVKKKRNDRYDLQRIGQGEGPHHTSSSADMMKPWVADAV
FT                 EYESSGTDD"
XX
SQ   Sequence 2607 BP; 991 A; 430 C; 519 G; 667 T; 0 other;
     aaactttggg ggctcgtccg ggatcgaaat cgacatcaag attggtgatc agtgtacaaa        60
     agttgcgaac aaagactacg cacacgggaa aaagtgaggg tattttcaca tttcaaattt       120
     cacgtgaaga cgtttacaaa gaattctatt gatagtaaaa tgcctcggaa gggtgctaaa       180
     gaagacgaag aatgctttgc tgaacctgct ccacaaattt ccttctgcga attagaaaaa       240
     tctatgactg cattttctgg tgacgatgca tacggcgtgg atacctttat aaaggatttt       300
     gaagatatcg ctaatctcat gcaatggacg ggcattgaaa aactgatcta cgcaaaaagg       360
     cttttgaagg ggacagcaaa attgttcctg agatctttga ctggtacgac tacatgggaa       420
     ctcttgaaaa cgggattaaa agaggaattt ggactacatc tgaacagcgc agccattcac       480
     aagaccatat caaataggaa gatgaaacca ggtgaaacct accaacaata ttttttgcaa       540
     ctcaaagaac tagcagtact cggaaatatt gaagatgacg ccctaatgga atacatcatt       600
     gatggcatcc ctgacaatga aatgaataaa actatactat atggagcttc caacatcaaa       660
     gaatttagga aaaaacttga tttatatgct gaaataaaga agaaatgtcg aacgtcaaac       720
     aaagcttata atcaatcaac aacatccaag cctacaacat ctggatggaa gaaaccatta       780
     cctaagaaga gatgtttcaa ctgcggagac ctagatcatg aatcttcagg ctgctctaaa       840
     ggaataaagt gcttccgttg taatgacttt ggtcataagt caactgactg tcccaaaaat       900
     ataaagaaga ctctagaaat aaaatgtaac aaggagaatg atagccaagc accctacaaa       960
     aaagttttga tcaataatgt tatggtaaaa tcacttattg acactggcag tgatgtgaac      1020
     ctaatgaatg aatctacatt tactcaaata catggcgaca cttgtaacta ccatcctgat      1080
     ttagtacaaa gcctgacagg cattggtgac tgtgaggtac atacaagagg ctcatgtact      1140
     ccaagaattg agattgatgg ttgccaatgt gaagcaacgt tctatatcat cgaagatgac      1200
     aaaataccag ttgatgtaat aatagggaac ccaatattac aggacataga actcagtttt      1260
     aagtctggtg ttatttctgc taaaagaatt ttacaagtca caatgttaga ggatcagact      1320
     gaggaaccaa tgattatagg aaatttcaaa tataaagatc agattgagaa aatactgaca      1380
     gaatatgatc ctggaaaatg ttgtaaagaa tccaaagttg aattaaaggt attagaaaaa      1440
     gaacattatg atgactttat gattgaagct ggaatattat ggaaaataaa agatggaaaa      1500
     aaattaatgg tggtacctaa gaaaatgcaa aatgaaatta ttagaaaaaa tcatgacaag      1560
     ggacattttg gattaattaa aacagaagag ttgatttcca gaaactatta ctttgaaaac      1620
     atgaaagata agatcaaatc agtattagaa aactgcttag agtgtatttt aatttcacat      1680
     aaaaagggaa aatccgaagg ttttctgcat gccatagaca aaggagacat accactatct      1740
     acttaccata ttgaccattt gggaccgttg acatcaacaa ataagaatta caagtatata      1800
     ctcacagttg tagatggatt cacaaaattt acatggattt acccaacaaa gactttgtcc      1860
     actgatgaag ttattgacaa actgaagatt caacaacaga cttttggttc accacagagg      1920
     attattagtg acagaagtac ctcctttaca tccaacactt ttaaagaatt ttgtgaaact      1980
     gaaggaatct tacatcacat tattactact ggccaaccta gaggtaatgg tcaggttgag      2040
     agagtccatc agataataat tgatgctcta agtaaattat cagcagatga tcccaccaag      2100
     tggtacaaac acatcagtaa tatccagaga tgcttaaatg gttcatttca aagaagcatt      2160
     aagatgtcac cctttgaatt actgacagga gtcaaaatta ataataaaaa tgaagctatc      2220
     tacaatttaa ttaatgaaga gaatcttaaa tttttctgtg atgaaagaga agacttgagg      2280
     aagaaagcaa gggagaacat acaaaaaatt caagatgaga atagaagaaa ttttaaccga      2340
     agacgaagga aacccagaga atatgaagta ggaaatcttg ttgctatcaa gaggacacaa      2400
     tttgtgcaag gctacaaact gcatccaaga tacttaggac cttatgaagt cgtgaaaaag      2460
     aagaggaacg accgttatga tctccagagg attggtcaag gtgaaggacc ccatcacacc      2520
     agtagctccg cggatatgat gaaaccttgg gtcgctgatg ctgtcgagta tgagtcatct      2580
     gggacagacg actgagcagg acggccg                                          2607
//
ID   Gypsy-3_BM-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   nscaf2937;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_BM_;
KW   Gypsy-3_BM-I; Gypsy-3_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-178
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 982-982 (2010).
XX
DR   Genome; nscaf2937; Positions  529386  529563.
XX
SQ   Sequence 178 BP; 64 A; 28 C; 37 G; 49 T; 0 other;
     tgtgggaata tttaggtgta accattggcc acaccgacct gacagatgac agatggtgca        60
     tgaagtataa gtgacagatt gattaagacg aaataagaaa agacgtatat ttttgtgaac       120
     tgatgattaa ataaaattta acaaattcgc taatttcatt gtgcaccgcg atcccaca         178
//
ID   Gypsy-3_BrCo-I repbase;    DNA;    INV; 6774 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-6774
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1403-1403 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1535..2797
FT                 /product="Gypsy-3_BrCo-I_1p"
FT                 /translation="MDDLIKFYRLLKEDFLRATKRILKEEVPKQETTLEDA
FT                 RIDIITTFNKIVQFYIDHWNKFSEKDQDTLLEKFETNKNKLIDCFKVLNVI
FT                 ADPNTITYNQLLVESELKRQINSNPNSRSDPNQTNESGPDYSHKMSAEENF
FT                 LKLCGSTINKPYDGDPLSLNSFVDSLNLLNKMAKSDALKEILIEFALTKLI
FT                 GTVRDGIVGTPGTVNEIIDAVKAVVKPESSKVVEGKFHALRLDRTPVQNFC
FT                 DKSNELAERFRRALILEGIPPERAEIMTVDKTVEVCRLNAKSDLIKSVLAS
FT                 TPFTDHKEVVSKFICEISSQRQEKQVLSYRAQRGNPNNYRGRGRNRGNGYS
FT                 RGNNRGDQVNSQTFYNSNRNDNSNNNYYRRNNRYNGRSRGTSNRGYRSNNF
FT                 NNSSYPVRYLGNEEAPQWGLGGGKARK"
FT   CDS           2592..6500
FT                 /product="Gypsy-3_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ILRRSTIRTGMTILIITITGEIIDIMVEVEAPLIEGT
FT                 ALTILIILVILSDIWETRKPPNGDWGGGKPGNSPSTTGNNKLKTVYSLNSN
FT                 FSDFVILFSKLNYEGSTMLVDTQAGISLIKISSIKNYFNVAKRMNVNDIIS
FT                 IKGFTNEIILSLGTICVDFYVDNEIVPALLHVVPDDFDIPSDGIIGKDFLH
FT                 FYKCSIDLNKMTLNINLNGYILPIPLLEGPEDDVMVLPARSEVVRSIKLSS
FT                 VGDVLVLDQEIEEGVLVPRTIVSSSNPLIRILNVNTSYRAVKKSSFIETEP
FT                 LSKYDIVDLKQASSKENRKTQLFEKLRKNTNPLYRSKMQKLWDKYPDIFTL
FT                 DSDKLTVNNFYKQELRVVDTEPVYIKNYRLPHSQKEEINKQIKKFLDSNLI
FT                 EPSRSNYNSPIILVPKPPLNGEKRWRLCVDYRMVNKKLIADKFPLPRIEDI
FT                 LDNLGRAKFFSILDLYGGFHQVPLEETSRDITSFSTDNGSYRWKVLPFGLN
FT                 VSPNSFSRMMSLAFSGVSPLQWFLYIDDIVVVGCSEKHHMKNLESAFQVCE
FT                 KYNLKLHPDKCKFFKTEVTYLGHMCTDHGIYPDPSKTEAVQKYPAPQDKDA
FT                 VKRFVAFMNYYRKFIPNFAALAKPLNNLGRKRTDFHWTKECQVSFDELKQC
FT                 LLNPPILQYPDFMKEFTLTVDASKYAVGAVLSQEHEGHDLPVSFASRSFTQ
FT                 GEMNKANIEKELAAIHFGITHYRPYLYGYHFHVKSDHKPLTYLFSLRNPSS
FT                 KLTRIRLDLEEYNFSIGHIKGKDNVVADALSRITIEELKLVSEHSTQVNVM
FT                 TRAMKRNMNNDKIENEKSRSHEINESELNLHVYDGINDRNKPLIKFDINEN
FT                 KLQIFEKRKKIIEINRNDMDRLIAIHFENKIPRNIDKCTILKLFLRKVDEL
FT                 ANDKNVTHVQILNNDKIFQSFGIVNFKNICNETLNKLKIIVVKQPKIINSE
FT                 DEKKKLISEYHDHPIFGGHSGQRRMYAKLRINYFWKGMRKDIAKYVNNCSK
FT                 CKMNKPKRKNVEPLVLTDTPQTSFDTVIVDTAGPFKLTPNGNKYIVTLICD
FT                 LTKYLIAIPIKNKEAETVARAIFDNCILIYGPMSKILSDKGTEYLNELSRE
FT                 LYKLLSVEYRQSTAYHHETVGSIERSHRVLNEYLRSYVNEELDDWDDYLRY
FT                 FTYCYNITPHTSLDMRYSPFELVFAKSPKSYDFLLNHKIDPVYNFDNYAIQ
FT                 VKFQLQRMHKMAQHFLKLNKERSKVRYDEKVHQLDFKINDKVLVKNHDKHK
FT                 LEPVYSGPFTLKEVKTSNVVLVNDKGNEQEVHKNRLVKYCQS"
XX
SQ   Sequence 6774 BP; 2654 A; 1013 C; 1140 G; 1967 T; 0 other;
     tggcgaccga gtacagaagt tcgataacac gaataataaa agtgatcaaa taactaaagt        60
     tcagttcaaa aaaaaaaaaa aaatttcaat taattattga ctttaaaaaa taaaatggga       120
     acgacagatt caaaaccaca aaacaccgat gctagcggtg atttttcaaa cgcgaattct       180
     aatagcataa caataaatga gacattagaa agtcattcgt caacagttat aggtatctta       240
     ataattgtcg cagttatttt agtagttaac ttactaataa aattatacgt aatgaacaaa       300
     aagaacatac aaagaaaaga aagagccaag agtagaatca acttatcaag tgtttgatgt       360
     acgaataacg aaaaaaaaaa gagtgcagtt gttgtgaaac aaagagaaaa tcaatttatg       420
     agaaacttga accaaagtgt cataaagtat aacaaaaatt ttcaatattt tctatttttt       480
     ttgaactaaa aacaatttaa caaaaatata tacactgaaa ataagaatta agaaagccgt       540
     ttggaacaat tatttgtgaa agacagtgaa cagagtatgt catggaacaa gagtactaag       600
     aaagccgttt ggaacaatta tttgtgaaag acagtgaaca gagtacgtca tggaaaccga       660
     atcaaatagc aacgtgttaa aagaaataca agaatgcatg atttccatcg tcatctacac       720
     tttagcattc ttttttatag ctgctgtact ggtggtaata gtcaatatca ttacaaagaa       780
     aaataaaaat acaaattgac tatagttggt gagttacact taaacatttt ttttaattga       840
     tcgaaggaaa atttttatat aaaatattta ctcgccatat ttcgcgaaat ttcaatcagt       900
     tcaaaaacgt aacagttcac atagtagaaa tatattgcaa gttattcagc tacaagttaa       960
     ttatgaaaaa tattttgcca acgtgacaag aaagaaaaaa aaaataatat aaaatgtttg      1020
     ttaattccaa agaaaataaa tttttgtgtc aactcagtga aaataaaata aaacaattta      1080
     aaatgaatgt ccgttgcata ttgctgaggt aaagaattct tttaaattta aaatttttaa      1140
     taaatgaatt aattgaaagt tatcaaatat tttgtcaatt acacaaatat tctgtcaatt      1200
     tagtaaaaat aaaaaaataa aataaaaaaa gaaaaaaaaa aaaaagaaaa taaaacaaag      1260
     aaaaagaaca tatccaattt aaaatgaatt tcagttaatt tttgatgacg ttgtgaattc      1320
     ttttaataaa taaattaatc gaaagttatt aaatattttg tcaattaaac aaatattttg      1380
     tcaatttggt aagaagagaa aaaaaaaaaa acccaagtaa aataaaataa acaatttgaa      1440
     atgagtttcc gccgaatttt gatgagtctg ataattcttt tgtaaatttt atttcgggat      1500
     taaatattga atatggaact ttttattgat tttaatggat gacttaataa aattttacag      1560
     attattgaaa gaagatttct taagagcaac gaaaagaata ttaaaagagg aagtaccaaa      1620
     acaagaaaca acgttagaag acgctaggat tgacattatc actacattta acaaaatagt      1680
     tcaattctat attgaccatt ggaacaagtt ttccgaaaaa gaccaagata cgttgcttga      1740
     gaaatttgag actaataaaa acaagttgat agattgcttt aaagtgttga atgtaattgc      1800
     tgatccaaat acaattacat acaatcaatt actagtagag tctgagctca aaaggcaaat      1860
     taattctaat cccaattcaa gatctgatcc aaatcaaact aacgagtctg gaccagatta      1920
     cagtcacaag atgtctgccg aagaaaattt tctcaaatta tgtgggtcta ccataaacaa      1980
     accttacgat ggagatccat tgtcacttaa cagctttgtg gactctctga atttgttgaa      2040
     caaaatggca aagtctgatg ctttgaagga gatcttgatt gaatttgcgc ttactaaatt      2100
     gataggaact gttcgagatg gaatagtggg tacaccggga actgtgaatg aaattataga      2160
     cgcagtgaaa gcagtagtta aaccagagag ctcaaaagta gttgaaggaa aatttcatgc      2220
     attgagatta gatcgtacgc ctgtacaaaa cttttgtgac aaatctaatg aattagcaga      2280
     acgttttcgc agagcactca ttttagaggg aataccccca gaaagagctg aaattatgac      2340
     tgttgataaa acagtagaag tctgccgctt gaacgctaaa tccgatttga ttaagtcagt      2400
     gttagcatct actccgttta ccgatcataa ggaggttgtt tctaagttta tttgtgaaat      2460
     aagttctcaa cgacaagaga aacaagttct ttcatacagg gctcaacgag gaaatcctaa      2520
     taattataga ggccgtggta gaaatcgagg taatggatat tctcgaggta acaatcgtgg      2580
     cgatcaagta aattctcaga cgttctacaa ttcgaacagg aatgacaatt ctaataataa      2640
     ctattaccgg agaaataata gatataatgg tagaagtaga ggcacctcta atagagggta      2700
     ccgctctaac aattttaata attctagtta tcctgtcaga tatttgggaa acgaggaagc      2760
     cccccaatgg ggactggggg gggggaaagc caggaaatag tccctcaacg actggcaata      2820
     acaaattgaa aacagtgtat tctcttaatt caaatttttc cgatttcgtc atcttatttt      2880
     ctaaattaaa ttacgaaggc tccacaatgt tagttgatac tcaagccgga atttctctta      2940
     taaaaatttc ttcgataaaa aattatttta acgtggctaa gcgtatgaat gtaaatgata      3000
     taatcagcat taaaggattt actaatgaaa taatattatc cttaggaacg atatgcgttg      3060
     atttttatgt tgataacgaa attgtgccag cattactcca tgtagtgcca gatgatttcg      3120
     acatcccttc agatgggatt attgggaagg atttccttca tttttacaaa tgtagcattg      3180
     acctgaataa gatgactctt aatattaatt tgaatggcta cattctacca attccactac      3240
     tggaaggccc tgaagatgat gtgatggttt taccagcgcg tagtgaagta gttcgttcaa      3300
     ttaaattatc ttctgtagga gatgtactgg tattagacca agaaattgaa gagggtgttt      3360
     tggtaccacg aacaattgta tcatcatcaa atcctttaat acggatactg aacgttaaca      3420
     cctcctacag agcagttaaa aaaagtagtt tcattgaaac agagccgctt tctaaatacg      3480
     acatagtcga tctaaaacaa gccagctcaa aagaaaacag aaaaacacaa ctttttgaaa      3540
     aactcagaaa gaatacaaac cccttatata ggtcgaaaat gcaaaaactg tgggacaaat      3600
     atcctgacat tttcacttta gattctgata aactgacagt taacaatttt tacaagcaag      3660
     aattaagagt tgttgataca gaaccagttt atataaaaaa ttataggtta ccacactcac      3720
     agaaagaaga aataaataag cagatcaaaa aatttctaga tagcaatctc attgaaccta      3780
     gccgttcaaa ttacaatagt cccataatac ttgtccctaa gccacctctc aatggtgaga      3840
     agagatggag gctctgtgtt gattaccgca tggttaataa aaaacttatt gcggataaat      3900
     ttccattgcc taggatagaa gacatccttg ataatttggg ccgtgcaaag ttcttttcaa      3960
     ttttagacct ctacggagga ttccatcaag ttcctttgga ggaaacttca agagacataa      4020
     cgtcatttag cacggataat gggtcatacc ggtggaaagt tctacccttc gggctgaacg      4080
     tatctccaaa ttcattcagt agaatgatgt ctctagcatt ctcaggagtg tcaccattgc      4140
     aatggttcct ctatattgat gacatagtag tagtcggatg ctcagaaaag caccacatga      4200
     agaacctcga gtcagctttt caagtttgtg aaaaatacaa cctaaaactg catcctgata      4260
     aatgtaaatt ttttaaaact gaagtaactt atttgggtca catgtgcact gatcatggga      4320
     tatatcctga cccgtccaaa accgaggcag ttcagaaata tccagcccca caagacaaag      4380
     atgctgtaaa gcgtttcgtc gcatttatga attactatcg taaattcatt ccgaattttg      4440
     ctgcactggc aaaacccttg aataacctgg gacggaaacg tacagatttc cattggacca      4500
     aagagtgtca ggtttccttt gatgaactta agcaatgttt attgaatcca ccaatattac      4560
     aatatcctga ttttatgaaa gaattcacat tgacagtaga cgcctctaaa tatgcagttg      4620
     gtgccgtatt aagtcaggaa catgaaggac atgatttacc tgtgtccttt gcgtctcgaa      4680
     gctttaccca aggtgaaatg aataaggcga acatagaaaa agaattagcc gcaattcatt      4740
     tcggaattac ccattatcgc ccctatctgt atggatatca tttccatgtt aaaagcgatc      4800
     acaagcccct gacgtattta ttctcgttga gaaatccatc ctctaaactg actcgtataa      4860
     gactcgattt ggaagaatat aatttctcaa tcggacacat aaaaggaaaa gacaacgtgg      4920
     tagcggacgc gttatcacgt atcacgatag aagaactcaa actggtatca gaacactcta      4980
     ctcaagtaaa tgtcatgaca agagcaatga aaagaaatat gaacaatgac aaaattgaaa      5040
     atgaaaaatc tagaagccat gaaattaatg aaagtgaact taacttacac gtatatgatg      5100
     gcattaacga tcgtaataaa ccattgataa aattcgatat taacgaaaat aaattacaaa      5160
     tttttgaaaa aaggaagaaa ataattgaaa taaatagaaa tgatatggat cgactaatag      5220
     ccatccactt tgaaaataaa atacctagaa atattgacaa atgtacaata cttaaactat      5280
     tcttgcgcaa agtagatgag ttagccaatg acaaaaatgt gacacatgtg caaatcctta      5340
     acaatgacaa aatatttcaa tcatttggaa tagttaattt taaaaatatt tgtaatgaaa      5400
     cgttgaataa attgaaaata attgtagtaa aacaaccaaa aataattaat tcggaggacg      5460
     aaaagaaaaa attgataagt gaataccatg atcatcctat ttttggaggt cattcaggcc      5520
     agagacgcat gtacgcgaaa ttgagaatta attatttttg gaaaggtatg agaaaagaca      5580
     tagctaaata tgtaaataat tgcagtaaat gtaaaatgaa taaacctaaa agaaaaaacg      5640
     ttgagccatt agtgttaaca gatactcctc aaacatcttt cgacaccgtt attgttgata      5700
     cagcaggacc atttaagttg actccgaatg gaaacaaata cattgttact ctcatatgcg      5760
     atttgacgaa atatcttatc gctattccta ttaaaaataa agaggcagag acagtggcac      5820
     gtgccatatt cgacaactgt atacttattt atggtcctat gtctaaaata ttgtcggata      5880
     agggtactga atatttaaat gaattgtccc gagaattata taaattgcta agtgttgaat      5940
     atcgtcaatc aacagcttac caccacgaaa cggtaggatc tatagaaaga agccataggg      6000
     tcctaaacga gtatttgagg tcatatgtga acgaggaatt ggatgattgg gatgattatt      6060
     taagatactt cacatactgt tacaacatca ctcctcatac tagtttagat atgcgatact      6120
     caccattcga attagtcttc gcaaagtcac caaaatcata cgactttctc ttaaatcata      6180
     agatagatcc agtttacaat tttgacaatt atgcaattca agtaaaattt caattacaaa      6240
     gaatgcacaa gatggctcaa cattttttga aattgaacaa agaaagaagt aaagttagat      6300
     atgatgaaaa agttcatcaa ttagatttta agataaatga taaggtatta gtaaaaaatc      6360
     atgataagca taagttagaa ccagtatatt ctggaccatt tacacttaaa gaagttaaaa      6420
     catctaatgt agtcttggtc aatgacaaag gaaatgaaca ggaggttcat aaaaataggc      6480
     tagttaaata ttgtcagagt taaataagat aattatttca attaaattac tttatatatt      6540
     attttgataa tactttatta attatgtttt aattcttaaa aagcaattct tacaaaaaga      6600
     caaaaaaaaa aaaaaaaaaa aataataata ataataataa aaaaaaaata aataaaaaaa      6660
     agtgaagacg aagaaagtat actctaaatt ttgtttggca ttctaaattt tgttttcgtg      6720
     taagtaaatt tttgaaaaaa aaaaatttat tccactcttc taaaaggagg gagg            6774
//
ID   Gypsy-3_BrCo-LTR repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-160
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1391-1391 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 160 BP; 52 A; 18 C; 29 G; 61 T; 0 other;
     tgtaatgtaa ttgtctacat ttaggcaatt acattataca gtacacagtt attatatgca        60
     tgtagagaga gtggggagac tgtactttta atttattaat tgtcttgaat aaaattagtc       120
     tttggcaaac cactaaagag ttcggttgtt ttacttaata                             160
//
ID   Gypsy-3_BTa-I repbase;    DNA;    INV; 13987 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-13987
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 582-582 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1046..2863
FT                 /product="Gypsy-3_BTa-I_1p"
FT                 /translation="MHTFTLVIGAITFKLSYVEILPFLRTERRVKIDEDIQ
FT                 FEDVLKFTKSYPAATLLEFLRVRLGEDTDEASRQPLKKPYVYTYVREYKSV
FT                 EEYEERLKGTEPNYRAIKTDERGDPAEIFKLTKERIEWELAKKHYCYNYGT
FT                 VEKARAALKWIIDRHQHKSSTSAETPRSSNDAQGYGTSTLRDSGINTTANS
FT                 PEGTQFGGNKPISSETSDSQSADSNRTNELQNPKNLRIAEAEINHEEAEVS
FT                 EEEEEAEASEEEEEEEEAEVSEEEEEEEDDDMVRIYFEKLKLPFFSGKWNE
FT                 DLTDHFRRLETEGKAYGWDEADMKRVLAFFLAGAARDWYDRREAELEPKTL
FT                 NEIKEEFKKRFESKSNQSPYATLSARKQKWSERPMDYFDAMAHLRKKIPNN
FT                 FTDHDFIAHVLNGLLPEPQKMARQNNPETIEDLEKEIRNIEEALKLVGNPP
FT                 DLRGPDEASSSTNHSELTNRLDRLERLLTAQVTLTAQAPPEHEHPDNPIDQ
FT                 LVAAITKLAGQPNQGGCFRCGDKFHRIADCPIKENTRICYNCSNVGHFARD
FT                 CVMPPRQSRGSSPSRRRDRSQDRSNERVTTPPTCQLCNAVGHGALQCFKLN
FT                 DYARQQKN"
FT   CDS           2965..7296
FT                 /product="Gypsy-3_BTa-I_2p"
FT                 /translation="MEEVRLQPGESGIYSVHAPKIDVERTRKYELEPYILP
FT                 GVQIDKDENMKMASDKQFLINITNLTNGPKKLQKGLQVGKIIAREQGDGKI
FT                 PTIAVNLVEDPVTEPEIKTRIIIAGDHHLNQARVEVRKALEQHAQIDIFCP
FT                 ENGEMNRVLDELNHAAPSRDTKTIIVVIAGNEDFNRRYCLQSHSAIANDLP
FT                 LGRIRELTQEFHVAYTTLLPRYDINRLNEKIALVNADIIGQLMPGKTLTKI
FT                 NLSTENLPKTAFRANGIDLNNKGAEILANIIESHVRNIIEDKTESGIVSAI
FT                 ENGTQKKLNLKRPLRVKGLINFKEVPIMCDTGSSVNLVKPNLVNPDEIRPV
FT                 KNFQLLTASSEKFQPEGECTLTVELGQEKLQITCFVTDKIPVPIILGIPFM
FT                 MFYNSLICFDTQKVTLRKNVSRPIELEFTQEAETVHQCEAIVEEDPFAAMN
FT                 FVGLCATYEGPSKIKLASPIRLEPGEEKSAQVYYPKGKPETKFQIAADEVK
FT                 MKRGIEVKSVFTAENTPTILVRNRGPNIQILHQDTIVGTVKDAAQDHPPSS
FT                 QKIHNLEDVKKIEINENLSEREKNEAYALLNEFHDTFLWDHESLKGGQAKT
FT                 EPVRIELTENKLAYKSPYQLSPMEVKWLQTEVTKLKEQGILEDSRSPYGSP
FT                 AMLVKKPGHTTENPKFRLVQDYRQLNSLTKKVQWPLPALESVMQFVQQKKF
FT                 ICKLDCSSGYWQIPLHMDSRDFTSFTLAIGAFRSMVLPMGFCNSSAEFQSF
FT                 IDKMLSGLKYVYAICYLDDIYIMADTFENMLYALRLVLERIREYRVKLAYI
FT                 KCQIAAKEISLFGYLLTNEGLQVDPEKTQGIRDYTTPKSITEVRRWLGLIS
FT                 YYRRFIKNASLICKPINDLLKQKPRKFEWTPEANEAFLTLKEILTSAPVLV
FT                 SFDSSKELEICVDSCSYGVGAVLGQLMDEKTVKPVCYYSALFTKAEENYSA
FT                 TLQEITGIWKACKRFRPYIFGRRVRVITDHVALKQHVKIHNETHTITRIAL
FT                 KLAEYDIEVIYKKGRLHLNADALSRAIPRMEECHTVQLMDLNKLAGEQRVD
FT                 EEFAPIIKALNDPDSVADKIRRTSRQFFLDKDGTLFKKAVSPHHGDRLLCI
FT                 PETMRPKILNAFHDDITSAHPGILKTAAAIKTRYYWRDWLKDIKAWIKSCT
FT                 TCQATKCSNSLPAGLMQSTKIEPYPFRKIAIDAAGKFKASTSKNCWILCCV
FT                 DYYTKFVVATAVKHNDAATVGKFLLDITLTFGPVKYIKSDCGSSLIAEAIQ
FT                 VMMSKFGTKFHTNTAYSPQSSSQVEREFRNIKTILKQYVNTDQKNWDEVLP
FT                 LAVAALNKQVHCSTGFSPHHLLFGVKSTFPTDLELGTEPLGIPTSKRIEEM
FT                 RITRSQAMVNILKSQESQRRYHNARRKQVIMQEGDKVLVFFPVIKAGLMKK
FT                 LTTQYKGPYTISKKNYRCNLRDKFRHQENP"
FT   CDS           7403..9418
FT                 /product="Gypsy-3_BTa-I_3p"
FT                 /translation="MVSTVQAVATNRETLGQYNVPEIVIALEKGSPLPPFA
FT                 EDPKEANLQKQYVKIYREKQSNEEALTPENYYARFSLALYLEEIQIAKTMK
FT                 SYALKGARISDEDPDNLAITLPGSEDATIPLKKGDKIRITLTKNPELSYYG
FT                 AISSVEAGAAGIEMPHAFYFDYGTDDTADISFIMNRYAFRAAQRALEQASG
FT                 WIDNMLFPKTAPEAPQNLEEPIKWINPLISKNPEQQLALKSMLRVKSGTPF
FT                 ILNGPAGCAKTTVLIELLNQLLTRKDEVKILVTAPSNNAVDLLLAPLIKST
FT                 SPDRLIRLYPASRDASTIPAEIREAKCYNYGKTAETITYSATQLKGYDVIA
FT                 TTIVSAGKLVTKGMKSHFTHIIVDELSMSPEPETLIPLSLANTEKNPTRII
FT                 LSGDHRQLEPVLTSNLAKNFGLNISLLERLLSLPPYAIDPATKQHNPTIAI
FT                 RLKRNYRTHGKILQVPNELFYDGALIPKAPEVIANIAIGSSILPNPNTPMI
FT                 FHAVRGEERVEEATLSMNNPGEIDVIIYYITQLLQRNALSRPVNQTDIMVL
FT                 TPYRSQIRHIKAAITKRKWAGIRVSSIEAAQGDESLITILSTVRSRKAENR
FT                 KGYLGFLKNPKRQNVALTRARALEIIIGNPEALKADKNWNHLIEFCKKEGA
FT                 WRDEESNPVAQHRNSTKKLRKKR"
XX
SQ   Sequence 13987 BP; 4681 A; 3406 C; 2960 G; 2940 T; 0 other;
     tgcgtcatta ttgatgttcc gggcgatcct taacccactc tcctcgggtg aaccaccgtt        60
     gccgtttggg gtccctttga actcacatgc acagtagata aacaagcagt gaactccaac       120
     atctcattct ttgtttcggt tttttattct ttttctcttt caaatttggt ttattgaata       180
     actttaaaat tcactttggt tcattcagtt ttttttttat caaaattttc gaaatttctt       240
     tcaaagttta accatttctc acgatcgatt ttcattccat atctttgaaa accctttgga       300
     aatttttaaa atttttatca ttatcttcct tttcaccgat tttagttttc tctttagatt       360
     ttaaattagt ttttttttct ttcttagttt tatcttgata ttgttccatc gagtaactcc       420
     gaattcagtt ttgattttta tcggttctct catttcccat ttaatcacgg tacttaaata       480
     cccacggaac gctggagaac aattttttaa aaaaaaagga agattaagtt taaagttaaa       540
     aattatagtc ttgcccatac ccctttatca atcttgatat taatcaattt ttgcctgctc       600
     tttttttgtt ccccgtgtta accctaatca aaatttccat tttcagactt tttttaaaaa       660
     ctgtttttca gacttttttt aaaaattaac gaaaatttat ttatttattt tttactcatt       720
     tacaggtttt tttttaaatc ttttttttga gtgctaaaat aaacctcacc tcgctagttg       780
     acaattgtaa tctcgagccg ggcgagcgct tacaaccgtc aactagggac gtttaaataa       840
     tcatagctta agcgtcgttt tttttatcta acgagttaaa ataatttttt ttcttttcat       900
     tttttttact ttccaccttt ttcggccatt tgtgcaaaat taattttggt aatcacttac       960
     ctcccagcat ctgcatcctc ccgcagtatt ccagaatcaa ctctattctc tgaggaggca      1020
     tgtagaagat gaataagaat cctccatgca taccttcacc cttgtaatcg gtgctatcac      1080
     tttcaaactc tcttacgtag aaatcctacc attcttgcgg acggaaagaa gagtgaagat      1140
     agacgaggat atacaatttg aggacgtact gaagttcaca aaatcctacc cagcagcaac      1200
     tctgcttgag ttcctacgag tccggctagg agaggatacc gacgaggcat ccaggcaacc      1260
     gttgaaaaag ccatacgtct acacatacgt cagagagtac aaatcagtgg aagaatacga      1320
     agaacgcctg aagggaacgg aacctaacta ccgtgcaatc aagaccgacg aaaggggaga      1380
     cccagcagaa atattcaagc ttacaaaaga gaggatcgag tgggaactag caaagaaaca      1440
     ctattgctac aactacggaa ccgttgaaaa ggccagggct gcactgaagt ggataatcga      1500
     cagacaccag cacaaatcca gcacatcagc agaaaccccg agaagttcaa acgacgcaca      1560
     ggggtacggc acttccaccc tcagagattc tggaatcaac acaacagcaa acagccccga      1620
     ggggacgcaa tttggaggaa acaagcccat atcttctgaa acatccgaca gccagtccgc      1680
     ggattcaaat cgcacaaacg agctacaaaa cccgaaaaat cttcgaatag cagaagcaga      1740
     gatcaaccac gaagaagcgg aagtaagcga ggaagaagaa gaagcggaag caagcgagga      1800
     agaagaggaa gaagaagaag cggaagtaag cgaggaagaa gaggaagaag aagacgacga      1860
     catggtgcgg atatactttg aaaagttgaa actacccttc ttcagcggaa aatggaatga      1920
     agaccttaca gaccattttc gtcgcctgga aactgaggga aaagcgtacg gatgggatga      1980
     agctgacatg aaaagagtgc tcgccttctt cttagcagga gcggcaaggg attggtatga      2040
     cagaagagaa gcagaactgg aacccaaaac gctaaatgaa atcaaggaag aattcaaaaa      2100
     aaggttcgag tcgaaaagca accaatctcc gtacgcaacc ctctcggcga gaaaacagaa      2160
     gtggagtgaa aggccgatgg actacttcga cgcgatggcg cacttgcgaa agaaaatacc      2220
     aaataatttc accgaccacg acttcatcgc acatgtcctg aacggcttac tgcctgagcc      2280
     gcagaaaatg gcgagacaaa acaacccaga gacaatcgaa gacttggaaa aagagatcag      2340
     gaacatcgaa gaggcgctga aactggtagg caacccgccc gacctcagag gcccggacga      2400
     agcatccagc tcaacgaacc actcagagtt gacgaaccgg ttggaccggc tggaacgact      2460
     cctaactgct caggtgacac taacagctca ggctccaccg gaacacgaac accccgataa      2520
     ccccatcgat caattggtcg cagccatcac aaaattggcg gggcaaccca accaaggggg      2580
     ttgtttccgg tgcggtgata aatttcacag aattgccgac tgccctatca aagaaaacac      2640
     aagaatatgc tataactgta gcaacgtcgg gcattttgca cgagactgcg ttatgccccc      2700
     acgacaatcg cgaggatcat cccctagcag acgcagagac cgatcgcagg acagatcgaa      2760
     cgaacgagtc acaacaccac caacctgcca gctctgcaac gcggttggac acggagcttt      2820
     acaatgtttc aaactgaacg attacgctag gcagcaaaaa aactaataga gcctcctatt      2880
     gcaacgggtt tcaaggcaat aacgaatcat gaggctcaaa aggaaccctc aaaagcaaaa      2940
     tttttcgcaa caaaagtaca cctaatggaa gaagttcggc ttcaaccagg cgaaagcgga      3000
     atatactcgg tgcacgcacc aaaaattgac gtcgaacgga cgagaaaata cgaactggag      3060
     ccctacatac taccaggggt acaaatagac aaggacgaga acatgaaaat ggcatcagat      3120
     aagcagttcc tgatcaacat aactaacttg acaaacggcc caaaaaaact gcaaaaaggt      3180
     ttacaggtcg gcaaaataat cgcccgagaa caaggagacg ggaaaatacc aacaattgca      3240
     gttaacctcg tagaggaccc agtaacggag ccagaaatca aaacgcgaat aataatagct      3300
     ggagatcacc acctgaacca ggcaagggtc gaagtcagaa aagccctgga acaacacgcg      3360
     caaatagata tattctgccc ggaaaacgga gaaatgaata gagtactgga cgagctgaat      3420
     catgccgcgc cgtcacggga cacaaaaacg ataatagttg taatagccgg aaacgaagat      3480
     ttcaatcgaa gatattgcct ccaaagccac tcggcaatcg ccaatgacct acccttgggc      3540
     agaatcagag aactgacaca ggagtttcac gtggcctaca caacactgct gccaagatat      3600
     gacataaaca ggctaaatga aaaaattgcc ttggtgaacg ctgacatcat cggacagctt      3660
     atgccaggga aaacgctcac caagatcaac ctgtcaaccg aaaatctacc aaaaacagct      3720
     ttcagggcga acgggatcga tctgaacaac aagggagccg aaatactagc aaacataatc      3780
     gaaagccacg tcagaaacat aatcgaggac aaaacggaat ccggaatcgt gagtgccatt      3840
     gaaaacggaa cgcaaaagaa gttaaacctg aaacgccctc tccgagtaaa aggactcatt      3900
     aatttcaaag aagtacccat aatgtgcgac acaggctcat cggtaaacct ggtgaaaccg      3960
     aacttagtaa acccagacga aattaggcca gtaaaaaact ttcaactttt aacggcctcc      4020
     tccgaaaagt tccaaccgga aggagagtgc acactgacag tggaactcgg ccaggaaaaa      4080
     ctgcaaataa cttgcttcgt caccgacaaa attccggttc ctataatctt gggtataccc      4140
     tttatgatgt tttacaacag tctaatatgt ttcgacacgc aaaaagtaac cctgcggaaa      4200
     aatgtgagcc gacccatcga actggaattc acacaagagg ccgaaaccgt ccaccagtgc      4260
     gaggcaattg tggaagaaga cccttttgca gcgatgaatt ttgtcggttt atgcgccaca      4320
     tacgaaggac cgagcaaaat aaagctagca agcccgatca ggctagaacc aggggaggaa      4380
     aagagcgctc aagtatacta ccccaaagga aaaccggaga ccaaatttca aatagcagcc      4440
     gacgaagtta agatgaaaag aggaatagaa gtcaaatcag tattcacagc cgaaaacaca      4500
     ccaacaattc tagtgagaaa caggggaccg aatatacaaa tcttgcacca agacaccata      4560
     gtagggacgg tcaaggacgc agcacaagat catccgccaa gcagccagaa aatccataac      4620
     ttagaggatg taaagaaaat tgaaatcaac gaaaaccttt cggaacgaga aaaaaatgaa      4680
     gcctacgcat tactgaacga attccatgat acatttctct gggatcatga atccctaaaa      4740
     ggcggacaag cgaagaccga gccagtgcgg attgagctaa cagaaaataa attagcctat      4800
     aaaagcccgt atcaactcag ccccatggaa gtgaagtggc tgcaaacaga agtgacgaag      4860
     ttgaaggaac agggaatact ggaagattcg cgctcaccct atggatcgcc cgccatgctt      4920
     gtaaaaaaac cgggccacac gaccgagaac ccaaaattca gactggttca agactaccgg      4980
     cagctaaact cgcttacgaa aaaagtacaa tggcctctcc cagcactaga atctgtcatg      5040
     caattcgtcc agcaaaaaaa attcatctgc aaattagact gcagcagcgg atattggcaa      5100
     atacccctac acatggattc aagagatttc actagcttca cactggcaat tggagcattt      5160
     cgaagcatgg ttctcccgat gggattttgc aacagttcgg cagaattcca aagttttatt      5220
     gacaaaatgc taagcggcct aaaatacgtg tatgcaattt gctacctcga cgatatatat      5280
     atcatggccg ataccttcga aaatatgcta tatgcactac gcctagtgct ggaaaggatc      5340
     agagaatatc gcgtgaaact agcctacata aaatgtcaga tagccgcaaa agaaatatca      5400
     cttttcggct atctcctcac gaacgaggga ctgcaggtag accccgaaaa aacgcaagga      5460
     atcagggatt acacaacacc aaaaagcata acggaagtgc gtcgttggct gggattgata      5520
     tcatactacc gccgtttcat aaaaaatgct agcctcatat gcaaacccat caacgatctc      5580
     ctcaagcaga aacctaggaa atttgaatgg acccccgaag cgaacgaggc cttcctgaca      5640
     ctaaaggaga ttttgacaag cgcacccgtg ctagtatcat ttgacagctc aaaagaatta      5700
     gaaatttgcg tagactcatg ctcatacggt gtcggagcag tcctgggaca actaatggac      5760
     gaaaaaactg ttaaacccgt gtgctactac tcagctctat tcactaaagc agaggaaaat      5820
     tactccgcaa ccctccagga aatcacagga atttggaagg catgcaagcg gttcagacca      5880
     tacattttcg gcaggagagt gcgagtgata acggaccacg tagcgctaaa gcagcacgta      5940
     aaaatacaca atgaaacgca cacgatcact cgaatagccc tcaaattggc ggaatacgac      6000
     atagaagtga tatacaaaaa agggagactg catctgaacg cggatgcctt atcacgcgca      6060
     ataccccgaa tggaggaatg ccacacggtg caattaatgg atctaaacaa attagcagga      6120
     gagcaacgag tggacgaaga atttgccccg ataataaaag ctttgaacga cccagactca      6180
     gtagcagaca aaatcagacg gacaagcaga caatttttcc tagacaagga tggaacgctc      6240
     tttaagaaag cagtaagccc acaccacggg gacagattat tgtgcatccc ggagacgatg      6300
     cgcccaaaaa ttctgaacgc gtttcacgac gacatcacta gcgcacaccc cggcatttta      6360
     aaaacagcgg ccgcaataaa gacccgctat tactggagag actggctaaa ggacatcaaa      6420
     gcatggatca aaagctgcac aacatgccag gcgactaaat gcagcaactc cttgccagct      6480
     ggattaatgc agtctacaaa aatcgagccg taccccttcc gaaaaatagc aatagacgca      6540
     gcaggtaaat tcaaagctag cacgtcaaaa aactgctgga tcctctgctg cgtcgattac      6600
     tacacaaaat ttgtcgttgc aacagcagta aagcacaatg acgccgcaac agtgggaaaa      6660
     ttcttgctag acataacgct gacattcggc ccagtgaaat acatcaaatc cgattgcggc      6720
     tcatccttaa ttgcagaagc aattcaggta atgatgtcaa aattcggaac taaattccac      6780
     accaacacgg cctattctcc tcaaagcagc tctcaggtgg aacgagaatt ccgaaacatt      6840
     aaaacgatct taaagcagta cgtaaacaca gaccaaaaaa attgggatga agtacttccc      6900
     ctagcggtgg cggcactgaa caagcaagtg cattgctcaa cgggtttcag cccccaccat      6960
     ctgctgttcg gagtcaagag taccttccca acagacctcg aactggggac agaacctctc      7020
     ggaataccga catcaaaaag aatcgaagag atgagaatta cccgaagtca agcgatggta      7080
     aacattctaa agtcacagga gtcgcaaaga agatatcaca acgcgcgaag aaagcaagta      7140
     ataatgcaag aaggcgacaa agtccttgta ttttttcccg taatcaaagc tggcctcatg      7200
     aagaaactca cgacgcagta caaaggaccg tacacaatct ccaaaaaaaa ttacagatgc      7260
     aatttacgag ataaatttcg gcaccaagaa aatccctaaa ctacgaaaaa tcaaagtaga      7320
     aaggcttagg cgatactccg accccaaaaa agtgcggagt aacatctaca agaaagaacg      7380
     ccccagagaa cgaaaccacc ccatggtgtc gacggtacag gcagttgcaa caaacaggga      7440
     aacattaggg caatacaacg ttccagaaat agtgatagcg ctggaaaaag ggagccccct      7500
     accccccttc gcagaagatc cgaaagaagc caacctacag aagcagtacg tgaaaatcta      7560
     ccgagaaaag caatcaaacg aagaggcctt aacaccggag aactattacg cccgattttc      7620
     gctggcactt tacttggagg aaatccaaat tgcgaaaacc atgaaaagtt acgcactcaa      7680
     gggcgccaga atatcggacg aggaccctga taatctcgcc attactctgc ccggcagcga      7740
     ggacgcgact atccctctga aaaagggaga caagatacga atcaccctca cgaaaaatcc      7800
     agaactaagc tactacggag caatctcaag cgtagaggcg ggagcagcgg gaatagagat      7860
     gccacacgcc ttttacttcg actacgggac cgatgacacc gccgacatat catttataat      7920
     gaaccgatac gcattcaggg ccgcgcaaag agccctagaa caggcaagcg gatggataga      7980
     caacatgttg ttcccgaaaa ccgcaccaga agcacctcaa aaccttgaag aaccgatcaa      8040
     atggataaat ccgctgataa gcaagaaccc cgaacaacaa ctagccctga aatcaatgct      8100
     aagggtaaag tcagggacgc cattcatact gaacggacca gcaggatgcg cgaaaacgac      8160
     agtcctaata gaactcttaa accaactact aacaaggaaa gacgaggtga aaattctagt      8220
     aactgcaccg tcaaacaacg cagtagattt gctattagct ccgctaatca aatcaacatc      8280
     accggacaga ttgataaggt tgtacccagc atcaagggac gctagcacaa ttcccgccga      8340
     gatcagagaa gcaaaatgct acaactacgg aaaaacggca gaaacaatca cgtacagcgc      8400
     cacgcagcta aagggatacg acgtgatagc aacaaccatt gtatcagctg gaaaattggt      8460
     aactaaaggg atgaagtcgc atttcacaca tataatcgtc gacgaattat cgatgagtcc      8520
     ggagcccgaa acgctaatcc cgctctcgct ggcaaacacc gaaaaaaatc caacaagaat      8580
     aatcctatca ggggaccacc gccaactaga acccgttcta acatcaaact tggccaaaaa      8640
     tttcggccta aacatatcac tccttgaaag attattaagc ttgccacctt acgctataga      8700
     tccggcgaca aaacagcaca acccaacaat agcgatcaga ttaaaaagaa actatcgcac      8760
     ccacggaaaa atcttgcaag tgccgaacga gcttttctac gacggagctc tgatcccgaa      8820
     agcaccggag gttattgcaa acattgccat agggtcaagc atattaccca acccgaatac      8880
     accgatgata tttcacgcag ttcgagggga agaacgagta gaagaagcga cattgagcat      8940
     gaacaacccc ggcgaaatag acgtaatcat ttattacata acgcagcttc tgcaacgcaa      9000
     cgcattgagc aggcctgtaa accagacgga catcatggtt ctcaccccgt acagaagtca      9060
     aataaggcac ataaaggcag ccataaccaa aaggaaatgg gccggaataa gagtaagctc      9120
     gatcgaggcc gcacaggggg atgaaagttt aattacaatc ctgtcaacgg tgcgatcgag      9180
     aaaagccgaa aaccgaaaag gctacttagg attcttaaaa aacccgaaac ggcaaaacgt      9240
     cgccctgact cgagcgcgag ccctcgaaat cataatcgga aatcccgagg ccctaaaagc      9300
     ggacaaaaac tggaatcacc taatcgaatt ttgcaagaaa gagggagctt ggcgcgatga      9360
     agaatcaaac cccgtcgcgc agcacaggaa ttcaaccaaa aaattgcgaa aaaaacgcta      9420
     agaacatcat cgctaagctc aaaaagtaaa ggttgaggca agcgagccgg cagaagtaaa      9480
     cacgaatttc ccacgcacca tttcgtcggt caccccgtgt accaaccgaa cggactcacc      9540
     gacgaaatgg tgaatccaaa attcgaaacg gaataagtcg ccataagaac cagcaaataa      9600
     cgcgcagcac ggagcgaagc gcctgaaagg tcggcaaccg cacgcacaac acaagttctg      9660
     cagccacagt ctccgagccg ccacaaacac tcgaaacact ggaatagcac ggagcgcctg      9720
     aaagataggc aaccgcacgc acaacacaag ttccgcagcc ccgagccgcc atgcgggacg      9780
     cgcattacac aaccgcgcat aacacggcac ggcaccatat atcgatcgcg ggaaggatgg      9840
     tacccacaac cagacgagcc gtccacgcta ccacgcgcgc aatgaacgcg gcaaactata      9900
     ccagtaaatt cgcacaaccc gttccgaggg aacccatggg gatcccgcat gagtatacca      9960
     cgacacagtc acctcaaaag ttcacaagtt ccaaaagtta aagccggacg cgcagcgcga     10020
     cagttcgaga cgagcggacg cgagatgaaa aaaccaactg aggccccgtt cacttgggaa     10080
     aaatcttcaa gatcacggca ggcagcagga aatcgtcagc attttcatcc gcgctgcagg     10140
     acagaccagc aggaccccga ctccccgctc ctatcagcca cgggagccag ggagatctag     10200
     aacatgagac gaaaaaacgc aggcggagca aaagtcgcgg aagccgtcag aacactcagc     10260
     atccagagcg aatccggcaa gcaacggatt cccccccccc cccccccccc cgaagaggag     10320
     aaaaaccgaa aagccgaatg cacccggaac ttcacagggc aaaaagctta aaaagccata     10380
     gaaatcctac cttatgcaaa aaatattacc ctccattgct gtgttaaaat tcccattctc     10440
     gaagccacct tagtttttaa taaaattccg cggtaatatg tcagttcaac tctccagata     10500
     accacacggc cgaaacgcgg ctcttgtgag actagcggac gaaacggtgg gagtcgaaaa     10560
     tcccggattc tgaattatgc agggcccggc gaaagacggg ggctgaacgg ccataggacc     10620
     ccggaatata aatgtaaatg taatgctgat gtagcccgta ggtgtctgat aacggggata     10680
     tgtaaatgat atgttcgggg atatgttccc tttaatcaga aaattttaga gaaaaattta     10740
     aagttatgtt tcaatcgtat caatgtagga gatcaattgt aaatatgcgc gaaatcgcac     10800
     agccagtata gatttaagtt agcgcaagaa tgcgagaagc agtcaaattt tgacggccta     10860
     caaaggttta gggatttatg acgaagagcc ctcgattttc ccctaatttc cgtagaataa     10920
     ttaatcaaat ttcaaactta cgaagtccct ttgcctctcc ctccttgctt ctcatatttt     10980
     taaatgttga aatgtaatgt gttttttttt ttaatgttga atgaaatgtc tcttcagggc     11040
     aacaaaactt gaccaaaata ctattgcggg agcaaatttt tactggaatt tattgctgca     11100
     ggagcaataa attattttgt ctaaaattag ggacagaatc agacgttaaa atataattac     11160
     acaataaatg catctattta tattagacta gtggcctcaa catgtggcaa gatgcctgat     11220
     ttcgctaatt gcctacggca tatccattaa atatttcacg aaacctgaaa aaggcactgc     11280
     agaaatactg ccgcgtcagg caagaacgcc gtacggccag tcgagagttg ccgtcgccga     11340
     gaaactcatg ctcatttttt tttcttactg aattcagatg ccttatagaa gaagaagcac     11400
     agaatccagt attgacgtgg taattttttt ttgcaaatgg gctagcttat aagtaaaaaa     11460
     attgtggcac tctaatccga atatctgctt aactgataag tcaactgtat gaataccgaa     11520
     gcgaataaca gtatgagagt taagcgattt ggcgataaat aattacacct cacgcagaga     11580
     gcggtacaag taattgtaaa taaaattaat ttaaggtatt gtaaggtaat gtgtggtatt     11640
     gtgtaaatag taagttccac gcatcaatgt gagctgcagt cgggcagtat agcgcggccg     11700
     aggattgcac tatagacagg atccaggtct ctcgagcatc gccgaacaga gagagacgca     11760
     cttatgggac attaccgagt gcgacagcag cgtccaattg gatgcagaat tcgctgatcc     11820
     accagtttgt ccactcgcaa cggcgaccac gctaggagcc gaaccccgcc tccccccctg     11880
     ccaagccctg tcggccccgt cagtgcaagc cgcagttgaa cagtatagct aatccaaaat     11940
     ctctatatga cagctcaaac cattaatagc ctaaatttag gcaattaaca gtttttagaa     12000
     aaaaaaaaaa catagttgtt ttttttcttt ttgacaattt aggtttaatg tattaccacc     12060
     gcattcacat ccatgcaata gaccgccgat ctcgccgcac actggtcaaa gaaagcagga     12120
     ggagtccacc aatactatca attatttttt agattagtat taaatgatat tgaagacaat     12180
     gatagatgat attattacgt acttctacaa tcactactgc taataatagt aaccaattaa     12240
     aaattactca accagcaatg tagtaaccga cctttcctgc tcgcacccac cactgtgcga     12300
     cgaatatcgt ggtccgcgtg agtggagaga tgcgagaaac agactcttga tttcaaccta     12360
     tgttggtctc acagcctagc aaacgactgt gaaaacgcgt atcagcgcat tccgcgcgac     12420
     agcaccgcac gggcgcgtta aagtacgcgg aatagcctct ttctagaagc acaattcgtc     12480
     ataaatttgt tgcaagacgc actaacttgg atacttgtaa ctctcaccag aatatagcac     12540
     tattgcttct cgaatctggt gcggtatttt tctttgtaaa taatgctact cttaatcgaa     12600
     ttttcccatt tcagtgtatt ttttcccttg gtaaatcata ctttcaattt tagctaattt     12660
     aatttgctaa ttttagttac taattttaaa ttaatttcag ttactagtac tccatgctca     12720
     ttgatccaat aatcctgtag ggataattac gtattatgat aaattcccgc aaccttcatg     12780
     tataaataaa ggcctctatg ttagtgcaag acaaaaaaac aaaaaaacca aacgacaaat     12840
     ttttttttga tcctgtttta tttcgttctt gacgtcattg caattcaatg cttacgctgc     12900
     ttatgcgaat tcatatgaat tccagcaatt aaaatgtgta aatttttgta aaaaaaaaaa     12960
     aaaaattttg gatcgaactc ccccattaaa tggtagaaag cacgacttaa caagcttctt     13020
     tcttatgtta catgcacaat gataattcga gaggacgacc aaatctgtga aaccagggca     13080
     gctccaggtg caagtggatc cttcagcggg acacgcagtc agctccaaat ccctatccag     13140
     ccacgacggg cacacaggca ccataactac tcgcaggccg ccgacgacaa cctggccaag     13200
     cggcaacaca gctcacaggt ccggccccat aaccgacacc gtctctgttg gtgcaacact     13260
     gtcattctgg ccgacttatc acgcgagatg tccgcgtctc acgcatgtca cagtctacag     13320
     agcccagttc acaccgccgg ctagcgacgc cgtccaacga tgtcattcca acgccgaccg     13380
     cgcggtctgc gccaccctct ccaatttgcg cagcaccgat cgatgaccac ccgttgacgg     13440
     caagcggcag catccactac gagcaagcac acgtccgcac gcccagcctg gtgttgacag     13500
     accgacagcc ataaaccaca ggaacgagcc acccacagcg gaagcggtgc caccctagcc     13560
     cttggctctc aagtcgacga catcaccaag aagacctatg ccctagctga ctgcaacccc     13620
     aaggaggacc acaagcgccg agagcagccc ccgcacacgg acgaggaagt ccgatcacga     13680
     gcagaaaact taattttttt ttgcaaaaat caaccgccca atcaatgtaa cccccccccc     13740
     tcttcaatga ccccttttag aaaaagcaga gaacttcgag cagacaacgg agggagggtt     13800
     ctcgacaggg cgaaagtgaa gtaagagagt aaaaaacaga gcccctaaca cctcgcgggc     13860
     gagcggacca cggagaccgc catgccaccg gcgcacagca cccgcgccgc ggccgtcgcc     13920
     accgccaaaa gttgccatcc cccatttacg agcgccgcaa gcgccgctct ggttaaggcg     13980
     ggcgggg                                                               13987
//
ID   Gypsy-3_BTa-LTR repbase;    DNA;    INV; 792 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-792
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 608-608 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 792 BP; 194 A; 206 C; 203 G; 189 T; 0 other;
     tataacgatc ggatcatggg gcgatggcga tttcggcgag ggcgatagcc gcggagcggg        60
     ggcattgccc cggcttgctg aagtccccgg atttcccacg aaaactccgc ctgagcatag       120
     tgtgaacggc cactaactca aaacatcagg ccagcgcgcc gtgctaccgc gccggatttc       180
     ggacaaaaca gcgatttcca acaccctgca agcgggcaaa tctaccgttt tgtcagaggt       240
     ccggcgcgat agcatggttt tccgctgaac gtggaaatcc gtaaacatac agtgccggaa       300
     acgagaaaca acagctaagg actttcagga gggtcccatg gtaagctcga ccgcgattcc       360
     accttcaaag tttagtagtc tccgaggtgt cacccaagct gctcctcact gcgtcaagcc       420
     caaaactcag tgcgaccctc gccttgtcga gaaccccctt cccccctttt cgttgagtga       480
     ttgttgtcga gtttagagtt gagagtttag attagagtgt tgagtaataa gtagttatca       540
     gatcatttga gttgtagagt ctgtcaaata aatccatcca tttttagtag tccatccagc       600
     gtgtcttagt tatcttagtc atctatcctg agtcgtcgac ctgtgtaggt ggtaagaccc       660
     ccatatttac taaaacgagt cccgtggaac tcacccatca atccacggtg gtggaggcaa       720
     aagatcgccc caaaggagag tggtagttgg gagtagagtg cccttttggc cctacccgca       780
     gcgaccgtta ta                                                           792
//
ID   Gypsy-3_CFl-I repbase;    DNA;    INV; 5452 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-5452
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1013-1013 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~90% identical to the consensus. The 3'-end is not
CC   determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3229..3702,3669..4256,4163..4792,4729..5451)
FT                 /product="Gypsy-3_CFl-I_1p"
FT                 /translation="MGSDLPIAYASRVLNNAETRYSPTERELLALVYAVKH
FT                 FRPYIYGRKFTLVMNHKPLEWLNSVSDPTSRLMRWRLKLAEYEYEIKYKPG
FT                 KKNKNADALSRNPIEDIKNIYPLHAKRAFSTSSDTSAEKDYKKIKTSHPIS
FT                 KRQLTTDSADLVTRHHIKKRGSGNPAPHKKIRTDNLPTYNDSDKEERIELH
FT                 ETLSDSDSSTISYYYDTDIDSDDNSEMTSKKQKRKHESSSSGQGRRVKRKN
FT                 RRKMHKNVEKSNSSTEECVNLDTTPGTSPIEITSPVEHPHKKTNEDFESEQ
FT                 NYRHIELHDTEQKPMEIDLSDDSFKAETNINIEAQIHAPHGSVRTPQNLEN
FT                 IQTSQKIPVITHRSTNSRTSWFCENTTKSRKYTNITKNPCDNIDAIQIIEK
FT                 DIPLKREEIEAMKIDQEDKMDYEINYSPLKYREQKTPESTSIGSSTETASS
FT                 PFHGINPKLIEMTKRKTKIKTPLTNRKRRPRKQTNVKLKSPKTTKQTKKLM
FT                 KRSSSFSQMPRIEEERKIPTNILYTPIILDEEGSYNIFYRHKRQSSRRNWK
FT                 RLYVGKSVKYLKILKVLTKLEKIICRKICQIPENFKGTLGHVFTAGKPNKR
FT                 TFGIIIKEELKQEISEEIIMRGFKELKNEMRRFNILHANISENKSKINISW
FT                 FKIRNMIRLAFLGTNLQITICQGQVCIPKHEDRLRIIREYHESSIGGHKGI
FT                 TKTMTRIRHKYYWDNMKXQIENFIRTCSNCQKKKLVRIKTKQPMVITDTPL
FT                 DAFDKVSMDIFGPLPVTNFGNKYILTIQDQLTKYSVAVPLIQANSEEIAKX
FT                 FTR"
XX
SQ   Sequence 5452 BP; 2116 A; 969 C; 952 G; 1394 T; 21 other;
     atagaaattt gatggcagcg gtgggatacg ctgattcctt cgaataaacc ggactgaagc        60
     ctggatcctg tctacatttc aagagaagag gaataccttg tccagaagga acacgacagc       120
     ggggataaga ttgcaaataa ggaatcaagt cttcatggat ttgcgtattc tcatactttt       180
     cttcactgcg tgctatatgt aagtgctacg agtatcatat ttcaatttct ttcgtgcgat       240
     atttattaag aatattctac aagtgtgtct catactgggg aagtagatgc gttgactaga       300
     caaataggaa acatgagcgt atccgacgat acaagcgcca atcgtagacc tagtaatact       360
     gtaccatatg taagcttgcg cgacgcagcc gagacaattc tcccattcga tggaaaaaat       420
     atgccaatat cacaattcgc taatagctgc ttacatgcaa aaaatatggt ctctcccgga       480
     gcagaatatg gtttggtaca aatgattaaa aataaattag taggacctgc tttaagagtg       540
     actttgagcg gagaatataa cgatatagaa tctttattag ctatcataaa aactagattt       600
     gcacccgttt attcttcatc ataattacac ggagaacttt ctaaagtaac acagcatcca       660
     gatgaatctg tggtggatta tggtagccgc gtatcaatga tattgcaaca attgaaatcc       720
     tgttatcaga ccgaaaatcc aaawcaagcg atccaattwa ctaattctgc agaagctaat       780
     gccatcaaaa atttcttaac aggattagaa actgacatat atkctagact ttwtgcgtga       840
     tcctgtcagt ttaaatcatg stgttgaatc tgccataaag gccgaagctg aatacaatga       900
     acatgcacaa cgaatgaaaa ttactgaggg acttatkcaa tcaatgcgct gtaataattg       960
     tctgggatat ggacamaatg cttattcgtg tagcaccgtt aatccattag cccaagtaac      1020
     tcatgtccaa tggcaaccta aagtttgtac attatgtaaa aattcaggac atacacgtgc      1080
     agaatgcaga acccctcaat caagaggctt aaattatcga aacactccga taaacaatat      1140
     gaatcgaaat atgaattata atcaagtaaa tcgacaaaat catacagctt ccagaaattt      1200
     taatttagta tgccgttatt gtaaaatacc aggacatagc attgaacagw gcaggaaaag      1260
     acaatataat aacgatccac aaaatcaact aacccgatcc aacaatcaag aaactcaaat      1320
     tagagaaggt cagggaaaca gggagcgggt gcagcgaaat ggcgcaacac tgaacgaacg      1380
     cccgcgagtg cgcctagtga ctcccgmaca aactcacgaa gaagcgcaag aataaacctc      1440
     gcgtgtaaca aaatcggtaa atcaccttcc gtcattctac ccagcaaaga tttgatagag      1500
     gaacgtgcta attttatgat agatactggt tttgacataa tttgataaag aagaattctc      1560
     ttcatgagaa gatgcttatt gataataaag tcgtatttga attaagcgga ataacaaaag      1620
     gtcgaactcg cacgttaggc gtagttaaaa tatgcatttt cggcaccgac acgttatttc      1680
     atgtagttcc agacgacttt ccgattcaac agaacggaat cctgggcaca gaattcttca      1740
     aaaatcaacg agcaactatc gactacccga gggccagtct agttgtaaac ggaattccat      1800
     actattttca tagtatgatg aaactgtcat gatcccagca cgaacacgga aacaaatttt      1860
     catacgagta gctaatcccg aaataaaaaa cggatatgtt ccgaaattag atgcagggcc      1920
     gcaggtgtac ttaggtaacg ccgtcgtatc caatcatcac ggaattgcat atctatatgt      1980
     tataaattca tcagatgagg atataaagtt agcgatccct acagtaaaac tatatccgtt      2040
     tgaggaaaca aagaataaca awgaaataaa kgaaatcaac gaatccgagt caagagatct      2100
     agaatcacga gtcaataaaa tattgcaatt actacgtctc gatcatttaa acgaagaaga      2160
     aagagtaaat gtcattaact tggtaacgaa aaataaggaa agattccatt taccaggaga      2220
     agctttagga gcaactaacg tgttaaaaca ccgtatattc actaacgatg accgtccaat      2280
     taatgtcaaa cagtatcgat atcctcaagt gcataaggaa gagatacaac gacagattgg      2340
     ggaaatgtta gaaaaaggtg twatagaacc atcaagttct cctataattc tcctttgtgg      2400
     attgttccga agaaagatga ttcgttaggc aataaaaaat ggcgtttagt catagatttt      2460
     cgtgccttaa atgaaaaaac ggtsggcgac gcatatccat tatcaaatat tgtagatata      2520
     ctcgatcaat tgggaagtgc aaaatatttt tcaatatttg atttagcatc tggattccat      2580
     caaattttaa tggataaaga tgacaaacat aaaacagctt tttcgacgtc ttacggacat      2640
     tttgaatata atcgcatgcc attcggatta aagaatgctc ctgctacgtt tcaaagatta      2700
     atggatcaag tattaacggg attgcagkga atcgaattat ttgtttattt agacgacatt      2760
     gttatatacg cacgatcact tgawgagcat aaaatttcag cgattaatga aacgtctatc      2820
     ggaagcaaat ttattcctac aaccagataa atgtgaattt ttgaaaagag aagtagcata      2880
     tctcgggcac ataataaccg aaaawggagt acgaccagat mmaaagaaaa taatggctgt      2940
     aaaaaatttt ccaacgccaa aaaccaggaa aaatattaaa caatttcttg gacttgccag      3000
     atactattga agatttatag aaaacttttc taaaatagcc aagccgttat cagatttaac      3060
     caaacagtca aatacgtttg aatggaagga agaacaacaa gaagcttttg ataagctgcg      3120
     mgaggttttg tgttcagaat attacaatat tcaaatttta atgagtcgtt tattataaca      3180
     acagatgcat ccggatatgc aatcggagca attttaagtc aaggaaaaat gggatctgat      3240
     ctccctatag cttacgcatc acgagtatta aataacgccg aaactagata ttcacctacc      3300
     gaaagagaat tattagctct tgtgtatgca gtcaaacatt ttcgtcctta catttacggt      3360
     cgtaaattta cacttgttat gaatcataaa cctttagaat ggttaaactc agtatcagat      3420
     cctacatcgc gattaatgag atggcgatta aaactcgcag aatacgagta tgaaataaaa      3480
     tataaacctg gaaagaaaaa taaaaatgca gatgctttat ctcgaaatcc tatcgaggat      3540
     ataaaaaata tatatccact acatgctaaa cgcgcattct ccacatctag tgatacgtca      3600
     gcagaaaaag attataagaa aataaaaacg tcacatccta tttctaaaag acagttaacg      3660
     acagatagcg cggatctggt aacccggcac cacataaaaa aataaggact gataatttac      3720
     caacttacaa cgattcggac aaggaagaac gtatcgagtt acatgaaaca ttgtcggata      3780
     gtgatagcag taccatatct tattattatg acaccgatat tgatagcgac gataattccg      3840
     aaatgacttc caaaaaacaa aagagaaaac acgaaagcag ctcatctggt caagggcgac      3900
     gcgtaaaacg aaaaaatcga aggaaaatgc ataaaaacgt cgaaaaatca aattcatcaa      3960
     ccgaagaatg cgttaatctc gataccacac ctggaacatc gcctatagaa ataacatctc      4020
     ctgttgaaca tccacataag aaaacaaatg aagatttcga aagcgaacaa aattatcggc      4080
     atatagaatt acatgataca gaacaaaagc cgatggaaat agatttatct gacgacagtt      4140
     ttaaagctga aactaatatt aacatagaag cacaaattca cgcacctcat ggttctgtga      4200
     gaacaccaca aaatctagaa aatatacaaa catcacaaaa aatccctgtg ataacataga      4260
     tgcaattcaa atcattgaaa aggatattcc attaaagaga gaagaaatag aagctatgaa      4320
     aatagatcaa gaagataaaa tggattatga aataaattat agtcctttaa aatatcgtga      4380
     acagaaaaca cctgaaagta cctcaatcgg aagtagcacc gaaactgctt cttcaccctt      4440
     tcatggaata aatcccaaat taatagaaat gactaagaga aaaacaaaaa taaaaactcc      4500
     ccttactaat agaaaacgaa gacctagaaa acaaacaaac gtaaaactta aatcccctaa      4560
     aaccactaaa caaaccaaaa aattaatgaa aaggagtagt tcattttcgc aaatgccaag      4620
     aattgaagaa gaaagaaaaa ttcccactaa tattttatat acaccgatca tattggatga      4680
     agaaggatca tataatatat tttatagaca caaaaggcaa tccagtagac gaaattggaa      4740
     aagattatat gtaggaaaat ctgtcaaata cctgaaaatt ttaaaggtac tctaggacat      4800
     gtatttaccg caggcaaacc taataaaaga actttcggca taattattaa agaagaatta      4860
     aaacaagaaa tatctgaaga aatcataatg cgaggattca aagaattaaa aaatgaaatg      4920
     agacgattca atatactaca tgctaacata tctgaaaaca aaagtaaaat aaatatatcc      4980
     tggtttaaaa tccgcaacat gatacgtctt gcatttctgg gaactaatct acagataacc      5040
     atatgtcaag gccaagtatg catacctaag cacgaagata gactacgaat tattcgcgaa      5100
     tatcatgaat caagtatagg aggacataaa ggtataacta aaaccatgac acgcatacgt      5160
     cataaatatt attgggataa tatgaaaama caaatcgaga attttattcg tacatgcagt      5220
     aattgccaaa agaaaaaatt agttcgaata aaaacaaagc agcctatggt tatcaccgat      5280
     acaccacttg atgcatttga caaagtttct atggatattt ttggaccatt acctgtgaca      5340
     aattttggta acaaatatat actgacaata caagatcaat taaccaaata ttcagtagca      5400
     gtaccgctaa tccaagcaaa ttctgaagag atcgcaaagg matttacccg ac              5452
//
ID   Gypsy-3_CFl-LTR repbase;    DNA;    INV; 916 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-916
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1014-1014 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 916 BP; 352 A; 177 C; 124 G; 262 T; 1 other;
     tgtcacgtcc ggcgatccat agatccctag atctagcaga aattttttct tttctcacta        60
     tcctccatcc aataagctac aagcacaaac taacatgaaa ctaagagaga cacacttata       120
     cgtcacctat aataaaatgc kaatctggag agagagatat atatatgaat catctatacg       180
     agcgagatag acttatatgt aatacttagg aaagacaaag accgatataa ggaaatcctt       240
     ttaaatataa acttctttta ttatacaact atataaaaat ataatgtaaa atatgtctaa       300
     aagattaagg agaatctatt tatgtaaaaa tcatgataaa tgaccaatat tttaaataat       360
     tattaaataa ttattgtaaa tctttgaaaa gggtcattta tcgtaattta ttataatgta       420
     tgtaagacac gaccttgcaa gcaatgcatt cggagaatca gttaatacgt attcctagaa       480
     aaactttctc ttaaagacca cccaagaagt tcgcaaaaat ccgtttcata gctaaggaat       540
     ttgttcttaa aactctgtca taaattaccc ctaccattca attttaaaag tgtataaaaa       600
     ctcttccaac aacggaagag agcagctcat tctcatagat tcactctaga cttaaactca       660
     ctcagattct tactcgtact gtaaaccgct agaccaagtc aagtcagaat aaagaattca       720
     aattttaaac aaaagtatat ttctttaatc atcgtcagta aagaaaaccc aactcaaagc       780
     agttaattat cctggggttt taccccctta accgcaagaa gaagaaccca caactaagac       840
     gttctgtcga actcgtaaaa ctgttggaaa atcctgcctc acggaaccaa ctgatcgacg       900
     ttaccagaac gtcaca                                                       916
//
ID   Gypsy-3_CQ-I repbase;    DNA;    INV; 4550 BP.
XX
AC   AAWU01007771;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_CQ_;
KW   Gypsy-3_CQ-LTR; Gypsy-3_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4550
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 385-385 (2011).
XX
DR   GenBank; AAWU01007771; Positions    8323   12872.
XX
CC   Positions [3454-3972] - Integrase core
CC   'CAAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..4515
FT                 /product="Gypsy-3_CQ-I_1p"
FT                 /translation="MDADQFAQFMGKFQEMIGSLKDKQASAPAAAAARGPA
FT                 ANSLAGNSAAASIPLPPPLELEGDMEENYNFFEGNWKTYASAIGMDGWPDT
FT                 QNKQKASILLSVVGKDALKKYFNFELTAAERADPALVLTAIKAKVVRERNK
FT                 FVDWFDFFSLSQEPTESIDNYLCRLKSLAKVCKFNALEDEMVKYKLATSIR
FT                 WMKLRSKLITTKNLTEANAMDLCRAEEIAERHPVTAGQPSAEVNVVKKSKM
FT                 KCKFCGAKHDFTKGACPALGKKCNRCGGKNHFEKVCKADRRKKLKKKKFRV
FT                 KKVQEETSSESESTEDSGDEEEESTESESVSIGKIVDKSGSGGNVSAELEL
FT                 LLDQKWRLVQCELDTGANTSLVGRNWLEEMTESSNVNLQPSSYRLQGFGGS
FT                 SIPVVGQVKIPCRRKGRKYNLVLQVVDVPHGPLLSANVCRLLGFVKFCNTV
FT                 NFVAPKTDQELLNIYRVKAQDIVHQHEGVFQGIGKFAGAVSSEVRPDVPPC
FT                 IQPPRRIPIAMRGKLKDELKNLEREGLIVKETQHTDWVSNIVLVKRKEQKS
FT                 ESIRICLDPIPLNKALKRPHLQFTTIDEILPELGKAKVFSTADARKGYWHV
FT                 VLDDESSRLTTFWTPFGRYRWIRLPFGIAPAPDIFQMKLQGAIQGLRGVEC
FT                 IADDLLIYGTGDTLLEALEDHNRCLESLLVRLEECNVKLNLEKLKLVEKSV
FT                 KFYGHVLTDKGIHPDESKIAAIKNFPQPTDRKQLQRFIGMVNYLSRFIPNL
FT                 SANFTVLRRLISEKEPWIWSEREEEEFKRVKQLVADTRTLQYYNVNEPIVV
FT                 ECDASSFGLGAAIFQSRGVIGYASRTLTATEKNYAQIEKELLAILFACVRF
FT                 DQLIVGNPKTTVKTDHKPLVTVFKKPLLSAPRRLQHMLLNLQRYRPSIEFV
FT                 TGKENVVADAISRAPFDERQADDRFDKRDIYKVFREVEEVKLSSFLKVKDE
FT                 QLNEIMEESAADASMQLIVKYTLEGWPTSVDKVLDSAKMFFKYRNELSTQD
FT                 GIVYRNDRIVVPHSLRRKLTEKVHVSHNGIEATLKLARANLFWPGMSAQIK
FT                 EAVAQCGICAKFCPSQQHPPMQSHPIPVYPFQLVSMDVFFADYQGKSCRFL
FT                 VTVDHFSDFFEVDVLKDLTPKSTIAVCKSNFSRHGKPQRVVTDNGTNFVNR
FT                 EWQQFAREWSFEHTTSAPHHQQANGKAEAAVKIAKRLMKKADEAGSDFWYA
FT                 LLQWRNVPNKVGTSPAARLFSRNTRCGVPTSANNLKPKLVSGVPEAIEERR
FT                 QKAKQHYDRKARKLPQLETGSPVLVQLNSETNKRWTPGTVSSKLNDRSYVV
FT                 EANGTQYRRDLVNLKPRKEPQTPEAIPVQATVPNVEMPPIERSNREPSFRS
FT                 APTEALPDQELSNSVPDVGVPEATTKPKAGRTPRAAKTPKPSRSPSVPAGG
FT                 EKFSRTKRDVKLPARFKDFYLE"
XX
SQ   Sequence 4550 BP; 1256 A; 1084 C; 1264 G; 946 T; 0 other;
     tggtgtcaga agcactcgtg gtgttccggc gtcattgaaa atcgcggaag tgtagtgaga        60
     aaaactcatc ccaagcgacg aaaagatcat ttgcaacagt aattttgaac agttttgcag       120
     tgaaacgtgt tttatcctgt tggcagccat atttttttcg ctctcgcgtt gggttgagtg       180
     ttttccggaa gtgaaaagtg cagaaaaatg gatgcagatc agttcgccca gtttatgggc       240
     aagttccaag agatgatcgg ttctctgaag gataagcagg cgagcgcgcc ggcagcagca       300
     gcggcacgtg ggcctgcggc gaattcgctg gccggaaatt cggcggcggc gtccattcct       360
     cttccgcccc cgctggagtt ggagggcgat atggaggaga attacaactt cttcgaagga       420
     aactggaaga cctatgcaag tgcgattggc atggacggtt ggcccgatac gcagaacaag       480
     caaaaagcca gcattttgct ttcggtggtg ggaaaagacg ctctgaaaaa atattttaac       540
     tttgagctga ccgcggccga gcgagccgat ccagcattag tgttgacggc aatcaaagca       600
     aaagtggttc gtgaacggaa caagtttgtg gactggttcg attttttctc gctcagtcaa       660
     gaaccaacgg agagcattga caactacctg tgtcgactca aatcgctcgc gaaagtgtgc       720
     aagttcaatg cgttggagga cgaaatggtg aaatacaagt tggccacctc gatccgttgg       780
     atgaagctca ggtcgaagtt gatcaccacc aagaacttga cggaagcaaa tgctatggac       840
     ttgtgtcggg ccgaagagat cgctgagcgg catccggtta ctgcgggtca gccgagcgcg       900
     gaagtgaatg tagtgaagaa gagcaaaatg aagtgcaagt tctgcggtgc caagcatgac       960
     ttcaccaagg gtgcgtgccc tgcgcttggc aagaagtgca accggtgcgg tggaaagaac      1020
     cactttgaga aagtgtgcaa agctgaccga agaaagaagc tgaagaagaa gaagttccga      1080
     gtgaagaaag tgcaagaaga aaccagctcg gagagtgaat cgacggaaga cagtggtgac      1140
     gaagaagagg agtctactga gagtgaaagt gtgtccatcg gaaaaattgt cgacaagtcc      1200
     ggcagcggcg gaaatgtctc ggcggaactg gagttgctcc tggaccaaaa gtggcggctg      1260
     gtacagtgtg agctagacac cggcgccaat accagccttg tgggacgaaa ttggttggaa      1320
     gagatgaccg aaagtagcaa cgtcaaccta caaccgtcat cgtaccggct gcaaggattc      1380
     ggcggaagca gcattccggt ggttggccag gtgaaaattc cgtgtcgcag aaaaggccgt      1440
     aagtacaacc ttgttttaca agtcgttgat gtcccacacg gcccgctcct ctcggcaaac      1500
     gtgtgccgtc tcctgggttt cgtcaaattc tgcaacacgg tcaactttgt tgcgcctaaa      1560
     accgaccaag aactcctcaa catctaccgt gtgaaagccc aggacattgt ccaccagcat      1620
     gagggcgtct tccaaggtat tggcaagttt gctggtgctg tgtcgtcgga agtccgccca      1680
     gatgtaccac cgtgcatcca acctccgcga cggattccga tagcgatgag aggtaagctg      1740
     aaggacgagt tgaaaaactt ggagcgggaa ggcctgatcg tgaaggagac tcagcacacc      1800
     gactgggtca gcaacatcgt gctggtgaag aggaaggagc agaaatccga atccatccgc      1860
     atctgcctcg acccgattcc gttgaacaaa gcgctgaaac gaccccatct tcaatttacc      1920
     acaattgatg aaatcctgcc agagctgggg aaggcgaaag ttttttcaac ggcagatgct      1980
     cggaaagggt actggcacgt ggtattggac gacgaaagca gccggttgac gacattctgg      2040
     acaccgtttg gtcgctaccg gtggatccgc ttacccttcg gaatcgctcc agccccagac      2100
     atcttccaga tgaagctcca aggtgcgatt caaggactgc gtggcgtcga atgtatcgcc      2160
     gatgatttgc tgatctacgg aactggtgac acgttgctgg aagcgctgga ggaccacaat      2220
     cgctgcttgg agagtttgtt ggttcgtctc gaggaatgca acgtgaaact caacctggag      2280
     aagctgaagc tggtcgagaa gtcggtgaaa ttctatggac acgtgcttac cgacaaagga      2340
     atacatccag acgagagcaa aatcgcggca atcaagaact tcccacaacc cacggaccga      2400
     aagcaactgc aaagattcat cggaatggtg aactacctca gtcgtttcat acccaatcta      2460
     agcgccaatt ttaccgttct acgacgactg atttcggaaa aggagccttg gatctggtcg      2520
     gagcgtgagg aagaggagtt caagcgtgtc aagcagttgg ttgcggacac gcgtaccctg      2580
     cagtactaca acgtgaatga gccgatcgta gtcgagtgtg acgctagctc ttttggtttg      2640
     ggcgcagcaa tcttccagag tcgaggagtc atcggatacg catctcgtac actcacggca      2700
     accgaaaaga actatgcgca aatcgagaag gagctgctcg ctattctttt cgcgtgtgtc      2760
     cggttcgatc agcttattgt tgggaatccg aaaacgacgg tcaaaaccga ccacaagccg      2820
     ctagtcaccg tgttcaagaa gccgttactc tcagcacccc gccgtcttca acacatgttg      2880
     ctgaatctac agcgctaccg tccgtctatc gagtttgtga ccggcaaaga gaacgtggtg      2940
     gcagatgcga tttcccgagc gccgtttgat gaacgccaag ctgacgacag attcgacaag      3000
     cgagacatct acaaggtctt ccgggaggtc gaggaggtga agctctccag tttcctgaaa      3060
     gtcaaagatg agcagttgaa cgagattatg gaagaatcgg cggccgacgc atcaatgcaa      3120
     cttattgtga agtacaccct ggagggatgg ccgacatccg tggacaaggt gctggacagc      3180
     gctaagatgt tcttcaagta caggaatgaa ctcagcactc aggatggtat cgtgtaccgc      3240
     aacgacagga ttgttgtccc tcactcgctt cgacggaagt tgacggaaaa ggtccatgtc      3300
     agccacaacg ggatagaagc aaccctcaag ctggcacgag caaacctatt ctggcctgga      3360
     atgagtgctc aaatcaagga agcggtcgca cagtgcggca tttgtgccaa attctgtccg      3420
     tctcagcagc atccaccgat gcagagtcat ccgatacctg tgtacccgtt ccagctcgtg      3480
     tccatggacg tgttcttcgc ggactaccaa gggaagagtt gcagatttct cgttaccgtc      3540
     gaccacttct cagacttctt tgaggtggat gtgctgaagg atttgacacc aaagtcaacg      3600
     attgctgtgt gcaaatcaaa tttctcacga cacggaaaac cgcagcgagt cgtaacggat      3660
     aacggcacaa attttgtcaa ccgtgaatgg cagcagttcg cacgtgagtg gagcttcgag      3720
     cacacgacat ccgcaccgca tcaccaacaa gctaacggga aggcggaggc agcggtcaaa      3780
     attgcgaagc ggttgatgaa gaaggcggat gaagctggaa gtgacttttg gtatgcctta      3840
     ctacaatgga ggaatgtacc gaacaaggtg ggcaccagcc ccgctgcacg cctgttttct      3900
     cgtaacacac ggtgcggcgt tccaacctct gccaacaatc tgaagccaaa gttggtatcg      3960
     ggagtaccgg aagccattga agaaaggagg cagaaggcga agcagcatta cgaccggaaa      4020
     gcaagaaagt tgcctcagtt ggaaacagga tctccggtgc tcgtgcagct gaactcggaa      4080
     acaaacaaac gttggacacc gggtactgta agcagcaagc tgaacgatcg gtcgtacgtc      4140
     gtggaggcaa acggtacgca atatcgacga gatttggtga acttgaaacc acgtaaagaa      4200
     cctcaaacgc cagaagccat tcctgttcaa gcaactgttc ccaacgtcga aatgccacca      4260
     atcgaaagat ccaacagaga gccttcgttc agatcagcgc ctaccgaagc tttgccggat      4320
     caagaactga gcaacagtgt tccagatgta ggagtaccag aagcgaccac gaagccgaaa      4380
     gcaggtagaa ctccaagagc agcgaaaacc ccgaaaccat cgagatcacc cagcgttcca      4440
     gcaggaggag agaagttcag ccgaaccaag agagatgtaa aactaccagc ccgtttcaaa      4500
     gatttctatc ttgagtagct ttattttttt tttatataaa acagagagga                 4550
//
ID   Gypsy-3_CQ-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   AAWU01007771;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_CQ_;
KW   Gypsy-3_CQ-I; Gypsy-3_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-206
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 386-386 (2011).
XX
DR   GenBank; AAWU01007771; Positions    8117    8322.
XX
SQ   Sequence 206 BP; 53 A; 41 C; 44 G; 68 T; 0 other;
     tgttgcgtta cgtagtttgt gaacgactag agttaagcct tttgttgacg ttccctccga        60
     acgtcattca ttgaagcgcg cgttctcgct ctttctcgac gattcattca ttccgtttcc       120
     gagtgcgcag caataaagac gttgttgaat aaacgctgtt ttgtgaagtt aagcagaagt       180
     attttatttg acacagaaat aaaaca                                            206
//
ID   Gypsy-3_DAn-I repbase;    DNA;    INV; 5671 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   08-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DAn_;
KW   Gypsy-3_DAn-LTR; Gypsy-3_DAn-I.
XX
NM   Gypsy-3_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5671
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-5671
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [3] (Consensus)
XX
CC   [3]: updated with consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           781..2316
FT                 /product="Gypsy-3_DAn-I_1p"
FT                 /translation="MGLDRSPEKMASGESSKPVCSICKAEIETAAESSRTT
FT                 CNHEFHRRCIESHFQKSRLCPVCKYQCGPSGSKAPDARETRSRSRMQQSEP
FT                 TRSLVASDPYISANAEGNVHERGRNPSTLLSTSSSRPVEADMIVNDLTLLE
FT                 VERRLSVMLSERLEDCVGACLQKLLGTPNGSSSNDAGTAQANEGERQRRNS
FT                 EIATDNRDLLTLENTSFNRNRTGPTVASPRSQHSRVSELEQRPDKVAQILN
FT                 SWRIKYSGTGVTVDNFIYRVEALTHQTLEGNFGILCRYANVLFEGKANEFY
FT                 WRFHKSVGVVRWDRLCEALRMQFRQGRDDGDIEELIRNRKQKPNESFDSFF
FT                 DSISVLTDQLEQPWGTAKLVRVLKNNLRPEIRHEILNVEVSSVSDLREICR
FT                 RRESFLEDVRRTHGYGKSNPFKRDVSEIIPGDEGKPTESDDEEAVEAFTLV
FT                 CWNCQEEGHRYQECVEERRIFCYGCGAADTYKPSCQKCSKNFKGSTAKPKY
FT                 RPKTSSARPNQSTMTE"
FT   CDS           2211..5597
FT                 /product="Gypsy-3_DAn-I_2p"
FT                 /translation="TKLSKVFKKLQRQHCEAEVQTEDFQCSTQSINDDRIG
FT                 SEASINASSNRPDVQTNPDLALLHRKIGEISEIKISTSNSSKPLQPPKTRS
FT                 AARMKSFWHNIRKFRQGIKYVCELQMTSRDPRPFLPVKFLNRTVYGLLDSG
FT                 ASISCVGGSLAKEIVASQMVYKPLKQKASTADGTVQRVLGLMKVELEFENV
FT                 AKSFTIYIVPSLKQDLYLGVDFWKTYDLFPKHLKIAEVEKVPIGHEKGNDG
FT                 NEHDLTDTQRARLDIVINCFPSFAREGLGRTNLIHHEIDVGDAKPVKQRHF
FT                 PVSPAVEKSMYAEIDRMLQLGVIEESESSWSSPIVMVTKPGKVRMCLDCRK
FT                 VNSFTSKDAYPLPQISGILSRLPKAEYITSLDLKDAYWQVPLHPASRDKTA
FT                 FTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVIPANLRNEVFIYLDDLLVV
FT                 SSCFEKHLDVLSEISLHLKRAGLTINVGKSHFCMKSVRYLGHIIGEGGIRT
FT                 DPDKISAISNFPAPKNLRSLRRFMGLCGWYRKFVPNFASLASPLTDLMTTK
FT                 KRFVLTEEAVKAFNELKRCLCEAPVLSSPNFSKPFAIHCDASKTGVGAVLV
FT                 QNSEEGDERPIAFISKKLNKAQRNYTVTEQECLAAIVALSNFRAYVEGHEF
FT                 KIITDHASLKWLMSNTDLSTRLARWALSLQRYRFTIEHRKGSQNVVPDVLS
FT                 RLNENEIAAIDLRDGLLVDMKSDCFQSQEYVDLLKLVKENGNNFPDLKVED
FT                 GYLYRKAEHLTGVQVHDEYAWKLWVPKRLVPEVLRKAHDNPLASHGGIHKT
FT                 IERIRRYYFWPGLVTDVKAYINSCDVCKTTKAPNHTLRPPMGKAPKTLRFF
FT                 QRLYIDFLGPYPRSRSGHIGIFIVLDHFSKYVFLRPVRKINAEVVIKYLEG
FT                 DLFMAFGVPETIVSDNGSQFRSEAFRRLTDKYEISHSFTAVHSPQANASER
FT                 VNRSVIAGIRSYLRPDQKDWDEHINHICCSLRSSVHSSIGTSPYYMAFGQH
FT                 MITSGSTYALLRKLNLLDDRSLLLNRSDSFEIVRQQASSHMLKAYEENAKR
FT                 YNLRARQVDFKEGQEVYRRNFRQSCFQTGYNSKFGPAFIKARVRKKIGNSY
FT                 YELEDLQGHLIGSYHAKDIRQ"
XX
SQ   Sequence 5671 BP; 1720 A; 1111 C; 1325 G; 1515 T; 0 other;
     gttctaatta ttaataatcc taaagaaaag tggcgctcaa cgtgaagggc ctctgtgagt        60
     aaaataaaca ctcataggga cttacgaata gaacttcaaa ttttattatt ctaatccttt       120
     tatccaaagg tctggctaaa agcagaagat agtgaggata acagttaaaa ttacattagt       180
     gtcttttctg gccaaagcta aattctggat ttatccacat catttcctac gaaaccatcg       240
     gagaagttag ttagtgcgcg aacacagaac aaatacaact gcggttagtt gtctgtccga       300
     ctaaaattaa cacccatgga aatcgtttct attcctctcg taataagggt atcgctagtc       360
     aaaatttaat gggaatttag tgcacaagct tgcgagcagt gtattaacct aaaatttaat       420
     agcgaaaacc cgaactttta actctattta ctttccgaga taaaataaac attccgtaga       480
     ttctgatctg gaaacaaatg ctacattttg tagaaagggc attgaccagg atcagttaaa       540
     ggtgttatca tctccctcta ggaatttcga gtaaagggta gtcctctaaa taggaattcg       600
     aaccccttgt aacttttgcg aagaaaatta gtaaactaaa aaaatcaaac ctgcgacagg       660
     cgtggcatta agcttgagtt cagtttagat accttttata tttcttgaga atttgtttgg       720
     ttgttgctat ttttgggttt tttttaaggc gttagtaaaa tatctaaaaa aaattttaaa       780
     atgggtttgg accggtcccc ggaaaagatg gcttctggag aaagctcaaa gcctgtgtgt       840
     tccatttgca aggctgagat cgaaacggca gccgagtcct caagaacaac ctgtaatcac       900
     gagttccata ggcggtgtat agaatcccat tttcaaaaaa gcagactctg tccggtttgc       960
     aaataccaat gtgggccatc tgggagtaag gcgccggacg cacgtgaaac ccggtccaga      1020
     tctcgtatgc aacaatcaga acctacgagg agtttagtcg ctagcgatcc gtatatcagc      1080
     gctaatgctg agggaaatgt acacgagagg gggcgcaatc ccagcacttt gctgtctacc      1140
     agctcctcaa gacccgtaga agctgatatg atcgtaaacg atctgacgtt attagaagtg      1200
     gagagacgac tctcagttat gttgtccgaa aggctagaag actgcgtagg agcctgtcta      1260
     caaaaactat tgggaacgcc gaacggttcc tcgtccaatg atgcaggcac tgctcaggcg      1320
     aacgagggcg aaagacaaag gagaaatagt gaaatagcta ccgataatag agatttactc      1380
     acgttagaaa atacttcctt caaccggaat aggacaggac cgacggtagc atcaccaagg      1440
     tcacaacata gcagagttag cgagttggag caaagaccag ataaagtagc tcaaatccta      1500
     aacagttgga gaataaaata ttcaggaacc ggtgtaacgg tggacaactt tatataccga      1560
     gttgaagccc ttacgcatca aactttggaa gggaatttcg ggatactatg ccggtatgca      1620
     aatgtcttgt ttgaaggcaa agctaatgaa ttttattgga gattccacaa gtcggttggt      1680
     gtagttcgtt gggacagatt atgcgaggct ctgcgaatgc aatttaggca aggaagagat      1740
     gatggcgata tcgaggagct aatacgtaac cggaagcaaa aacccaatga aagctttgat      1800
     agtttctttg acagcatctc agtgttaaca gatcagctcg aacaaccatg gggtacggcg      1860
     aagttagtcc gagtactcaa aaataatttg agaccggaga ttcggcacga aattttaaac      1920
     gtggaagtta gctccgtttc tgatttgaga gagatatgta ggcgtcggga atcctttctt      1980
     gaagacgtga ggcgtactca tggttacggc aaaagtaatc cttttaaaag ggacgtttcg      2040
     gaaataatac ctggtgatga gggaaagcct actgagtccg atgatgaaga ggctgtagaa      2100
     gcttttactc ttgtatgttg gaactgccaa gaagagggac accgctacca agaatgtgta      2160
     gaggaacgac ggattttttg ttatggttgc ggtgcggccg acacttataa accaagctgt      2220
     caaaagtgtt caaaaaactt caaaggcagc actgcgaagc cgaagtacag accgaagact      2280
     tccagtgctc gacccaatca atcaacgatg accgaatagg aagtgaggca tccataaatg      2340
     cttcaagtaa tagaccggac gtacaaacaa acccggattt ggctttgtta cataggaaga      2400
     taggtgaaat ttcggaaatt aaaatttcga caagtaatag tagcaaacct ttacaacccc      2460
     cgaaaactcg tagcgctgct agaatgaaat cattttggca caatattcga aagtttcgtc      2520
     aaggcattaa gtatgtctgt gaactccaga tgacttctcg agatcctcga ccgttcctgc      2580
     cagtaaaatt tctaaatcgc accgtctacg ggttgctgga ttcaggagca tctatatcct      2640
     gtgtaggagg gagtttagcc aaagaaatag ttgcaagtca aatggtttac aagcccctta      2700
     agcagaaagc gagcacggct gatggaactg ttcaacgggt attagggtta atgaaggttg      2760
     agttagaatt tgaaaatgta gcgaagtcct ttacgattta tattgtgcca tctttgaaac      2820
     aagatttgta tttaggggtg gacttttgga aaacttacga tctatttcca aaacacttga      2880
     aaatagcgga agtggagaaa gttccgattg gtcacgaaaa gggtaatgat ggtaatgagc      2940
     acgacttaac agacactcaa agagccagat tggatattgt aataaattgt tttccatcat      3000
     ttgctcggga gggcttggga agaaccaatt taatacacca tgaaattgac gtaggtgacg      3060
     ccaaaccggt caagcagcga cactttccgg tctcacccgc ggtggaaaag tccatgtatg      3120
     cggaaataga ccgtatgttg caactcgggg tgattgaaga atcggaaagt tcttggtcct      3180
     ctccgatagt tatggtgacg aaacctggta aggttcgtat gtgtttggat tgtcggaagg      3240
     tgaatagttt caccagtaaa gatgcatacc cactaccgca gatcagtggg atacttagtc      3300
     gcttgccaaa agctgaatac ataacaagtc tagatctaaa agacgcgtac tggcaagtgc      3360
     ccttacatcc tgcgtctcga gataaaacgg ctttcacagt tcctggcaga ccgctttatc      3420
     aattcaaggt gatgccattt ggactgtgta acgccaccag tactatgtca agactaatgg      3480
     acaaggtcat tcctgcaaat cttcgaaatg aggttttcat ctacttagat gacctcttag      3540
     tggtttcatc ctgtttcgag aaacatttgg acgtattaag tgaaatatca ctgcacctaa      3600
     agcgtgcggg tctaacaatt aatgtgggga agagccattt ttgcatgaag agtgttcgat      3660
     atttaggtca tattattgga gagggaggta ttaggacaga tcccgataaa atatcagcta      3720
     tcagcaactt tccagcacct aaaaatcttc gcagtttgag aagattcatg ggtttatgcg      3780
     gatggtatcg caagtttgtt cctaattttg cttctctggc ttctcctctt acagatttga      3840
     tgacgacaaa aaaacggttc gtcctgaccg aagaggctgt taaagcattt aatgagttaa      3900
     aacgctgtct gtgtgaggct ccggtgttaa gtagcccaaa cttttctaaa ccttttgcta      3960
     tacactgcga cgctagtaaa accggagtgg gcgcggtgct tgtacaaaat tcggaggagg      4020
     gggacgaacg tccgatcgca ttcatatcaa agaagttaaa taaggcgcag cggaattaca      4080
     cggtgacgga acaggaatgt ctggccgcta tagtggcgct tagcaatttt agagcatacg      4140
     tggaagggca tgaatttaag atcattacgg atcacgcatc cttaaagtgg ctcatgtcta      4200
     acacagacct tagtactcgt ttagctcggt gggcattatc tctacaaaga tatcggttca      4260
     ccatagagca ccgaaagggt tcgcagaacg tggtacctga cgttttgtct cgtttaaacg      4320
     agaatgaaat agctgcaatc gatttgcggg atggattatt ggttgacatg aaatcggact      4380
     gtttccaatc ccaggagtat gtggatttac tgaagcttgt gaaggaaaac ggaaataatt      4440
     ttcctgatct gaaggtagaa gatgggtatc tctaccgtaa agcagaacat ctcacgggtg      4500
     ttcaggtcca cgacgagtat gcttggaaat tatgggttcc gaagagatta gttcccgaag      4560
     ttcttaggaa agcgcatgac aaccccctcg cttctcatgg aggcatccat aaaacgattg      4620
     aaagaatccg gaggtattat ttctggcctg gtttagtaac tgacgtcaaa gcctacatta      4680
     attcctgtga tgtatgtaag accacaaagg cacctaatca caccttaaga ccgcctatgg      4740
     gaaaagcccc taaaacgcta cggtttttcc aacggttata catagatttc ctgggtcctt      4800
     atccccggtc aagaagtggg catattggga tttttatcgt ccttgatcat ttttctaaat      4860
     acgtgttttt gagaccagtg cgcaagatca acgctgaagt ggtgattaaa tatctcgaag      4920
     gcgatttatt catggcattc ggggtacctg agacgattgt atccgacaat ggctcgcaat      4980
     tccgctcaga agcatttcgt aggttgaccg acaaatacga gatcagtcac tccttcacgg      5040
     cagttcattc gcctcaggcc aacgcttccg aaagggttaa tcgttctgtc attgccggaa      5100
     tccgatccta tttgcgacca gatcaaaagg actgggacga acacatcaat catatatgtt      5160
     gctctttacg ctcctcggtg cattcgagta taggaacttc tccttactac atggcattcg      5220
     gtcagcatat gattacatct ggatcaacgt atgcactgct cagaaaatta aatttactgg      5280
     atgatcgttc tcttttgcta aatagatccg actcttttga aattgttcga caacaggctt      5340
     ccagccacat gttaaaggcg tacgaggaaa atgccaaaag atacaaccta cgtgctaggc      5400
     aagttgattt caaagaaggg caagaagttt atagacggaa ctttagacaa agctgttttc      5460
     agaccgggta taactctaaa tttggacccg ctttcataaa agcaagagtt cgcaagaaaa      5520
     taggtaactc gtattacgag cttgaagact tacaaggtca tttaataggg agttatcacg      5580
     ccaaagacat tcgtcaatag cgtcccttca gctgggtttt cagtctaggg tacgttggat      5640
     ataccctagc ctgaatgtag cgggggagct t                                     5671
//
ID   Gypsy-3_DAn-LTR repbase;    DNA;    INV; 2177 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   08-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DAn_;
KW   Gypsy-3_DAn-LTR; Gypsy-3_DAn-I.
XX
NM   Gypsy-3_DAn-LTR.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2177
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-2177
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 2177 BP; 642 A; 440 C; 413 G; 682 T; 0 other;
     tgtagcggtg gtctgaaggg actttgaaga aaatcaataa tttaacgaga taggtaaaag        60
     aagacctcaa tatttgaatg gagtagccgt tgaattcatt gcagcgttta aagtgaacag       120
     attacgttct gttattttgg gacgcttaaa ttttaacaat aggtggcgct agaaaaccta       180
     gttattaccg gttaagctca gcgggagatt agtctactct ggtggggtat tgatcaggga       240
     agattagcgg gttgatctaa atatggagga tgattttaga tcgggggcat ttccgctgca       300
     gctggcttta aaagctcgga ggcgtgcagt ttcgctctct tttttgtgtg cgcagccgta       360
     agggacagtc gcgtctacgt tgatttaaaa tcgggtacta acctcgtgga aaagtaaaat       420
     taaacaacaa agtgctaaaa agtggaaata gaaaggacta tagccaggag cgttatctac       480
     gagaagcccg gactgctgac tttagcagga gctatctgcc tttggccagc cgccaaattc       540
     aacagatttg aaaggggccg gatctgcggg tatgtagtta agtgaacagt gcggatcggt       600
     gctcctaacc caggggtaat aaattttttt tagttcggcc ctcttaatcc taaattaaac       660
     ataaacggga aattcgttga gggactgata aaaatttggc ggatgaaatg atttgacgac       720
     gctcccaaat ctcttgtacc tcgtcccgag ctccggccct gtcgcgacat ctaaatacac       780
     gaatgactta gagggtcaat cctgagcccc agaaggacac cacaccgcca caatcgcgcc       840
     actaaatcct tgccactaat agttcggatc ctgtaaaatt cttgagacac ataaatatgc       900
     ctttttgcca gttcaagaat gtgaattgga atcacgtgtc tctaacctaa tttgatattt       960
     tcttaattat aaaactgaat ttttttatat aaaatatttc cttagtcact taagtccaaa      1020
     ccaatttcgg ttccatacca caagcatcct gttttcaaat tatttcattt tttttagtta      1080
     taagtttatc taatccaatt tctctcagtg tgtacaaacg cttgtatgca agcttaaagc      1140
     ttttatatac aagcatcaat ctccagaatt ttttttagcg atgaggatct ctacactttt      1200
     gtgcagacaa cactaaattt taatgcataa ctttggggat ggccactttt atgccacttt      1260
     acagctttca gccctcggaa gatcgatctt tctacgctgg atccggagtg aacaatgtga      1320
     gtcgtttagt acatggtttt attatatcat aaattcccct tattgaaaat ttgcctattg      1380
     agaaatttta taagaaactg cccaacattg tagcgcgcct agtcgtctat gcatttatca      1440
     aaatttaaat aacgtaaact tataacaaag ctttaagctt gactaaaagt acaccattta      1500
     tctctcaaat ttagcctaat agaataccta aacctcttca aggtgtatat ttacatatcg      1560
     aagccatgct tgtgtacttt atgaacactt ttaaaaattt acttttgaat ccttttgaac      1620
     attagacaaa tttaaatcga aaaccttatg aagaattttg tttctacttt ttatattcaa      1680
     tttgtagcat taaagttatc taagtacttg aattcattta tctttatatt agcacctaag      1740
     tctatttgaa aattaaaccc cgttaatatt gatcatgaaa gctaactaaa tctataacat      1800
     ctgaactcag ctaatgacct agcggtcgca ggagaaaggg gtcatcagag ccattctcaa      1860
     ggatgatgat cttaggttgg gagggcaaat tggagaccac atctacacca gtggttccgt      1920
     ctagtttaca tcttcgcact ctcgttcttt tctatcccct tctataagat ttgatcttct      1980
     atcctttacc ggttctatct tgcaattctt atgtcgctag cacgctcaat ttcttgactt      2040
     taggttatta atttgtaaca cgtacgatcc gtccgaaaca agacctccac ccccaagccg      2100
     acgagcgaga gccggattct atagcgtgcc cctgtgaaga cgggtcccct tcatcaccca      2160
     gaccgttaca cgttaca                                                     2177
//
ID   Gypsy-3_DAzt-I repbase;    DNA;    INV; 9139 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-9139
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 757-757 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..1735
FT                 /product="Gypsy-3_DAzt-I_1p"
FT                 /note="gag."
FT                 /translation="MEPDAEKGSGEYYSGDFVSNPGVSTGWIYKRRREELE
FT                 RFALEFGFSNEGTVEEMRRRFAALFEGTLEQETWVRLAELERQYAKSPARA
FT                 KSPQPSTSTQTEGRMEDPKRWLRVPENSENQLGDPSNIGTVAEPQRPPSPE
FT                 QRTPAARRIRPTNERPQAGNDPTGGYPYSHATQMAERIRKWGIQFDGQDDP
FT                 LSFIDLLEERALSYGIDMDHLPRVMAEILIDRASRWFRTSRLQSVPWVDFR
FT                 REFLAFFLPPRYFEQLEDQIRGRKQAVGEPFKDFVIELRLLMHHAGYDATK
FT                 ELYRIYDNILPAYQLYVRRHELRSLTQLTALATEFESIQERNTPITPLPPR
FT                 NMPRYTRPTANQAPKEGESNRTPFRRPPWDSTESARRQPTSRTNAPAQEFA
FT                 HRMVTTPIVNPRMACRRCGEAGHASPNCNNPAILFCWECGKRGIRTIDCCR
FT                 RDTSGNDTRPRLTREQSGTTPAQTQN"
FT   CDS           1627..5472
FT                 /product="Gypsy-3_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="TRYTDDRLLSPGHVGKRHASPTDTGTVGNDARPNPEL
FT                 VKPLQLHDGRIVARVTIGGQDAEATIDTGASRSFISADLARQLDDNTNLRE
FT                 ACVQIRLADGSVRGITQILLAYIRLDSREVQIPLLVLPNMLEQVIVGLDFL
FT                 CAIETTIKCGTTLLQLRSRRPMANTPVVTASRVPTAGTKKPRSRRTPANSR
FT                 PRKTTTDTTSKQRAPSTNSKAATERTIPRPNTRSTNLRPTTEHTIPRPTIG
FT                 DTSSNVATQNMRRSTEAHGAVIPIRAKETRAASPQAIFPSQPRSLPNDQPP
FT                 SRVIDADTGINTSNHATPPTQTTPERASQPLAQVSALNPTNTLPLNGTTPV
FT                 VANIREHSRETEPPSAFDTTILPEDPSRAFSLGTDEQLEDEPERTNDPWPP
FT                 ELEAQIREFLDEELPKFEKLRGTTDLTEHTIVMRDNRPIKQRYYPKNPAMR
FT                 RIIDEQVDQLIAEGLIEPSRSPHSAPIVLVRKKNDKWRMCVDYRQLNERSI
FT                 PDAYPLPRINYILERLKNARFITTLDLKNGYWQVPMALNSREATAFTVPGR
FT                 GLYQWKVMPFGLHSAGATFQRTLDTVISADMEPYAFAYLDDIVVIGKDYTE
FT                 HLNNVKEVFARLLKANLRINAEKCTFFQRRIKYLGHVISEEGIHTDPDKVA
FT                 AVKDLRPPTNLKELRQCIGMASWYRRFVPNFATVVQPMSQLLKKGQTWTWE
FT                 QEQQEAFEKLKELLTTAPVLACPDFNVKFSLQTDASNVGVGAVLTQEIEGK
FT                 ERVIAYVSRRLNKAEENYSATDKECLAVIWAIRKLRCYLEGYRFDVVTDHL
FT                 ALKWLNTLESPYGRVARWALELQQYQYDVHYRAGKQNVVADALSRQPLETL
FT                 ARVEEEPDSCPWLKRRIQQVHDEPQKYPDYTYENGQLYRNLGHGPVGTESW
FT                 KLCVPKDRRTRVLHECHDQPTAGHLGIRKTIARVSQLYYWPGFYRDVRRYI
FT                 RNCVSCQKFKATQRRPVGKMLTRKAEEPFVTLCADFVGPLPRSKRGNTMLL
FT                 VFFDTFSKWVELIPLKKATTANLERAFRERILSSFGVPKLFVCDNGTQFTS
FT                 RSFRTFLQIAGVKLQHTAPYCPQENPTERANRTVKTMIAQFIDDHQNTWDE
FT                 LLPEMSLAINSSVSETTGFSPAFLLHGREPRLPGALYDEVTPGTGNIQEPT
FT                 TDKASRLKEIFSIVRSNIQRASQEQARHYNLRRRQWRPTIGSLVLVRQHHL
FT                 SNAAEGFAAKLAPKFDGPYRVKGFPSPNVVKLQHTSNRKQKVANINDLKEF
FT                 NDPELDNPADDPDTTTTQYRV"
FT   CDS           5801..7369
FT                 /product="Gypsy-3_DAzt-I_3p"
FT                 /note="env."
FT                 /translation="MSPLLLLLALVTATQAAVKVNDYTNADYIPIVDGDAV
FT                 IWEKPGYLHHTTNVTSYEVYADQTERTAEMFTDTRMAQVLATDLGHIRNLI
FT                 ATLKVHRREARSINLLGTALKVIAGTPDFHDWEQIRFKQKQLIESEHRQGE
FT                 INSKMQNRLNELTHFYNTIHKSDEAEKAQIIETVLAKNRIIITDLENLILG
FT                 LTLAKINMISPALLDGADINEFNGQQLNNITLVELLEVSNISAFQTPDLLH
FT                 FLIKFPQPKLSCRKLLIFPVQRHHRILDFSQGDIVADCGSQTLNIGACEAT
FT                 VGATFCRERGGSTCAQQMVAGSIAHCATLPGHLDPITIVDHGTLVINDANM
FT                 TVVDDSGASQKISGSYLVTYSHRVSLNGTWYINHLGDSKRKAVVSAMTQVN
FT                 ITAHREKLSLPFLRELSMKNLNQIDDLNEMLTVKSTVSYLLTLAVALPLCS
FT                 IIWILYRRLKIQGKQNASQDVEAVSSQLPTDARPAEVSTPTRGKIPMYATV
FT                 APPKIRRTQATSTHPIPRPREYGSGDE"
FT   CDS           7661..9136
FT                 /product="Gypsy-3_DAzt-I_4p"
FT                 /translation="MHPQKAAAPTEAPEVIYVDLTTDSEDESGAHAFRRTE
FT                 APPSSKNGDHRPPPFVPAPNDEPSWSTASTPLRDEEPENVPVSNGDAYADT
FT                 RRDEPNDESDGEFSDEENSDGPRDSPPLFSRRQSRFRRENLWSPPMFRRRD
FT                 PQAYHSPSPEPPSFAPMFEHAYRQHDPRDYSNPEWAPEYYHRDYAHAFSDD
FT                 EENEEEEPFARRLVTDTETFHHTVTPWGMRVTRVHHITVDLLVPPSRNRHA
FT                 FFETFREPTEALYDRPAFPVPDAVETPPEEVEAPTTTSTTSATPTTSPLVS
FT                 TNPETSGRATKRRRHSDPSTTAHTQHEPAISTATHAKVLHTESSLNQAPDI
FT                 DFFTSETQRVLGTTTSLSPPVATRDFDDISVEELLTVTAENQPRVDDEDLE
FT                 ELLSFLEEDFPLVDQRPEDDGLAEEIGRDAGWVIAPIDWQVDTPGRVVPTG
FT                 LVEEVQGRMQRADRIRCSVWIWDQQYQVHKRSLSGPVYIHLLPEERG"
XX
SQ   Sequence 9139 BP; 2679 A; 2736 C; 2175 G; 1549 T; 0 other;
     agtggcgccc gagcagggac ctgtaggaaa cttcagcaag gggtatggat taaaaaccca        60
     cggccaataa aatccaattg ataggcgaaa ctcaaacgcc gaccgcgata aaacagtact       120
     gcgccgcgca aaacctcgac gaacacccca caactccaac ggtgcggatc gcgtgaacga       180
     cagtagatac acccggagtg tccgcgcgcc caagggctga tcccttccat aacacgcgag       240
     tgactccagt tacagaaata cccaaccagg gagtgaaaga aatcggaaaa gagaaaaaaa       300
     aaaaacacac acatacgtta acatggagcc cgacgcagag aaaggttcag gtgagtatta       360
     ctctggggat tttgtctcta atccaggggt aagcaccggc tggatttaca agcgtcgccg       420
     ggaagaacta gaaagattcg cgctcgaatt cgggttcagc aacgagggca cggtagaaga       480
     gatgcggagg agattcgccg cattgtttga ggggaccctc gaacaagaga cctgggttcg       540
     actggccgag ctcgaacgac aatatgccaa gtcaccagcg cgtgccaagt cacctcagcc       600
     cagcacttcc actcagacgg aagggcgcat ggaggatccc aaacgctggt taagagtccc       660
     ggaaaactca gaaaaccaac tcggcgaccc ctccaacatc gggacagtgg ccgagccaca       720
     aagacctccg tctccagaac aacgtactcc ggccgcgagg agaatccgac ctacgaacga       780
     gagacctcag gcggggaacg accccacagg gggatacccg tatagccacg ccacacagat       840
     ggcggaacgc atacgtaaat ggggaatcca gttcgacgga caggatgatc cgctgtcatt       900
     catcgacctt ctcgaagagc gcgcgctttc ctacgggata gatatggacc atctaccccg       960
     cgtcatggca gaaatcctca tcgacagagc cagccgatgg ttccggacca gtcgactgca      1020
     aagcgtccca tgggtcgatt tccgcaggga attcttggcg ttcttcctgc caccgcggta      1080
     ttttgaacaa ttggaggacc agatccgagg ccgcaagcaa gcggtaggcg aacccttcaa      1140
     agacttcgtc atcgagctcc ggctactcat gcaccacgcc gggtacgacg caaccaagga      1200
     actctacagg atctacgaca acattttgcc ggcgtatcag ctgtacgtgc ggagacacga      1260
     actgcgaagc ctgacgcagc tcacagcatt ggccacagag ttcgagagca tccaagaacg      1320
     gaacacaccg ataactcccc tccccccgcg gaacatgccg cggtacacta ggccgacggc      1380
     gaatcaggca cccaaggaag gcgagtccaa ccgaacaccg ttccggagac ccccgtggga      1440
     ctcaaccgaa tccgcaagaa gacaacctac gagtcgaaca aacgctccgg ctcaagaatt      1500
     cgcgcaccgc atggtaacca cccccatcgt gaatccgcga atggcatgtc gccgctgtgg      1560
     cgaagctggc cacgcttctc ctaactgcaa caaccctgca atcctgttct gctgggaatg      1620
     tggtaaacgc ggtatacgga cgatcgattg ttgtcgccgg gacacgtcgg gaaacgacac      1680
     gcgtccccga ctgacacggg aacagtcggg aacgacgccc gcccaaaccc agaactagtt      1740
     aaacccctac aactacacga tggccggata gtggcgaggg tgaccatagg aggacaagac      1800
     gcggaggcca ctattgacac cggggcgtcc cggagcttca tcagtgccga cctcgcccga      1860
     caactggacg ataacaccaa tcttcgggag gcgtgcgtgc agatccgact ggccgacggg      1920
     tcagtacgcg ggatcacgca aatcctcctg gcttacatcc ggttagacag ccgggaagtc      1980
     cagataccgc tcttagtttt gcccaacatg ttagaacaag tcattgtggg cctggatttc      2040
     ttatgcgcga tcgaaacaac gatcaaatgc ggaaccaccc tcctacaact ccgaagccgt      2100
     cgccccatgg caaacacccc cgtggtcact gccagtcgag ttcccaccgc aggaacgaaa      2160
     aaaccgagat ccagaagaac cccggcaaac tcgcgtccga ggaaaactac gacggacacc      2220
     acgtccaagc aacgagcgcc cagcacaaat tctaaggccg caacggaacg cacgattccc      2280
     aggccaaata cgagaagcac aaaccttagg cccaccacgg aacacacgat tcccaggcca      2340
     acgataggtg acacaagctc aaacgtagcg acgcagaata tgaggcgatc aaccgaagcc      2400
     cacggcgcgg tgatccccat aagggctaag gaaaccagag cagcctcccc acaggcaatc      2460
     tttccttcac aaccaaggtc tttgcctaac gaccaaccgc ccagccgggt gatcgacgca      2520
     gacaccggga ttaacactag caaccacgct acccccccaa cacagacgac tcctgaacgc      2580
     gcgtcccaac cactggccca ggtatccgcc ctgaacccca caaacactct tcctctaaac      2640
     ggtaccaccc cagtcgtcgc caacataaga gaacactctc gagagacgga gcctccgagc      2700
     gcgttcgaca cgaccatcct cccggaagac ccgagtcgag ctttcagctt agggacggac      2760
     gaacaacttg aggacgagcc agaacgaacc aacgatccct ggccacccga acttgaggca      2820
     cagatccggg aatttctgga tgaagaactg ccgaagttcg aaaaactccg gggtacaaca      2880
     gacctgacgg agcacaccat cgtcatgcga gacaaccgac caataaaaca aagatattac      2940
     cccaaaaacc ccgcaatgag gcgaattatc gacgagcaag tcgatcaact aatagccgaa      3000
     ggactcatcg aaccttctcg aagccctcac agcgcaccga ttgttctcgt gcgcaaaaag      3060
     aacgacaaat ggcgtatgtg cgtagactac cgccagctca acgaacgttc catcccggac      3120
     gcctatccat taccaagaat caattacatc ctagaacgct tgaagaatgc gcgttttatc      3180
     accacgctag acctgaagaa tgggtattgg caagtaccca tggccctcaa cagcagggaa      3240
     gccaccgcct tcacggtgcc agggagaggt ctttaccaat ggaaggtgat gcccttcgga      3300
     ttacactccg cgggagcaac gttccaacga acgttagaca cggtcatcag cgcagatatg      3360
     gaaccctacg cattcgcgta cttagacgac attgtcgtca tcggaaagga ttacacggag      3420
     caccttaaca acgtaaaaga ggtcttcgcc agacttctca aggcaaacct acgaatcaac      3480
     gcagaaaagt gtaccttctt ccagcggcgc ataaaatatt tgggacacgt gatcagcgag      3540
     gaaggcatcc ataccgaccc ggacaaggtg gccgccgtaa aagacttgag accgcccacc      3600
     aacttgaaag aactccgaca atgcataggt atggcgtcat ggtaccgaag gtttgtcccc      3660
     aatttcgcca cggtggtcca accaatgtca caactgctaa agaagggaca gacatggaca      3720
     tgggaacaag agcaacaaga ggccttcgaa aagctaaaag agttactcac caccgccccc      3780
     gtactcgcct gtccagattt caacgtcaaa ttctctttac aaacggacgc cagtaacgta      3840
     ggcgtgggcg cggtcctcac tcaggaaatc gaagggaaag agcgagtcat agcgtacgtc      3900
     agccgacgac tcaacaaggc ggaagaaaac tactctgcca cagacaaaga gtgcctagcc      3960
     gtcatatggg caatacgtaa actacgatgt tatctagagg gctatcgctt cgatgtggta      4020
     actgaccatc tcgcgctgaa atggttaaac accctggaaa gtccatatgg tagagtggcc      4080
     cgttgggcac tcgaattaca acaataccaa tacgacgtgc attatcgcgc cgggaaacaa      4140
     aacgtagtgg cggacgcatt atccaggcag cccttggaaa cactcgcacg cgtcgaagag      4200
     gaacccgaca gctgtccctg gctgaaacga agaatacaac aagtccacga tgagccccaa      4260
     aaatacccgg actacactta cgagaacggt caactttacc gaaatctcgg ccacggaccc      4320
     gtcggaacgg agtcttggaa gctctgcgtc ccgaaagatc gtcggacgag ggtactccac      4380
     gaatgtcacg atcaaccaac agctggtcac ctcggcatta ggaaaaccat tgccagggtt      4440
     tcccaactat attattggcc cggattctat cgagacgtaa gacgttacat tcgtaactgc      4500
     gtaagttgtc agaagttcaa ggccacgcaa cgcagaccag tgggcaagat gctcactcgc      4560
     aaggcggaag agccgtttgt taccttgtgc gcagatttcg tcggaccact gccacggtcc      4620
     aaacgaggga acacaatgct gctagtgttt ttcgacacct tctctaagtg ggtcgaactg      4680
     atacccctca agaaggcaac cacggctaac ctcgagcgag cgttccgcga acggatcctc      4740
     agcagttttg gggtaccgaa actattcgtc tgcgataacg gcacccagtt caccagtcgc      4800
     tcgttccgaa cgttcctcca aatcgcaggc gtcaaactgc aacacaccgc tccatattgt      4860
     ccccaggaaa accccacgga aagggcgaac agaactgtga agacaatgat cgcccaattc      4920
     atcgacgacc accagaacac gtgggacgaa ctgttacccg aaatgtcgtt ggccataaat      4980
     tctagcgtct ccgaaaccac cggattcagc cccgcgttcc ttttacacgg aagagagcct      5040
     aggctgcccg gcgctctata cgacgaagtc acaccaggga caggaaacat ccaggagccg      5100
     actacggaca aagcgtcgag actgaaagag atattctcca tcgttcgaag taacatccaa      5160
     agggcaagtc aagagcaagc ccgacactac aatctccgtc gcagacaatg gcgccctacg      5220
     atcggctcat tggtcctagt aagacagcac cacctgtcaa atgcagccga gggttttgca      5280
     gctaaactgg ccccgaaatt tgatggacca taccgcgtaa aaggttttcc gtcgccaaac      5340
     gtcgtgaaac tgcagcacac aagcaaccgg aagcaaaagg tcgccaatat caacgacctg      5400
     aaagagttca acgaccccga actcgataat ccagccgacg acccggacac cacgacgacg      5460
     caataccgag tttgaccggg gatcgacgcc tatattaatc gatgccctgg ccttcgacga      5520
     tcagtacgcc actacccacg gcaccatcca gaccaaatca atcaactcaa acaaaaaaga      5580
     taataataat aattaaataa aaataaaaca atcaaaacca aaattaaatc ccgactccta      5640
     tcaaggatca acccacccca aagtgcatca aggactaaaa actcaaactt aaccagccta      5700
     aaattcaaag tcaaagttaa aggacaacaa taaccaaagc aattaagtgc aaaacaatca      5760
     cctctaatcc tgccgccgtc aacaataatc cctacacacc atgtcacccc tgctgcttct      5820
     actcgcccta gtcaccgcta cgcaggccgc agtcaaagta aatgactaca ccaacgccga      5880
     ctatatcccg atcgtggacg gagacgccgt gatctgggag aagccaggat acctccacca      5940
     caccaccaac gtcacgtcct atgaggtata cgccgaccag acggaacgta ctgctgagat      6000
     gtttactgac acccgcatgg cccaggtgtt agctaccgac ttaggacaca tccgtaattt      6060
     gatagctacg ctgaaggtcc accgtaggga agctaggagc atcaacctgc tcggtacagc      6120
     attgaaggta atagcgggaa cgcccgactt ccatgattgg gaacagatca ggtttaaaca      6180
     aaagcaactg atcgaatccg aacaccgaca aggggagatt aactcaaaaa tgcaaaaccg      6240
     actcaacgaa ctgacgcact tttacaacac gatccataag tcggacgagg ccgagaaggc      6300
     ccagataata gagacggtcc tcgccaaaaa tagaataatc ataacggacc tagagaatct      6360
     tatccttggg ctaaccttag ccaaaataaa catgatcagt ccggccctct tagatggcgc      6420
     cgatataaat gagttcaatg ggcaacaatt aaacaacata accttggtag agctattaga      6480
     ggtctccaac atcagtgctt tccaaactcc tgacctactc cactttctta tcaagttccc      6540
     ccaacccaaa ttaagttgta ggaagttact catattcccg gtgcaacgac accacagaat      6600
     attggatttc agccagggag acatagtagc ggactgcggg tcgcagaccc ttaacatcgg      6660
     ggcctgcgag gcaaccgtcg gggctacgtt ctgcagggaa cgagggggga gcacctgcgc      6720
     tcaacaaatg gtagccgggt ctatcgcaca ttgtgctacc ctaccgggac acttagatcc      6780
     cataaccatc gtcgaccacg gcactctcgt catcaacgac gcgaacatga ccgttgttga      6840
     tgactccggg gccagccaaa agatttcggg atcgtactta gtgacgtatt cccaccgggt      6900
     ctctcttaac gggacctggt acatcaatca cctcggcgac tctaagagga aggcagtggt      6960
     gtccgccatg acgcaagtca atataacggc ccacagagaa aaacttagtc taccgttcct      7020
     acgagaacta agtatgaaaa atctcaacca aatcgacgat ttaaacgaga tgttgacggt      7080
     aaaaagtacc gtttcctacc tcctcacgct cgccgtggca ttacctctct gctccattat      7140
     atggatatta taccgccgcc ttaaaatcca aggcaaacaa aacgcgtctc aagacgtaga      7200
     ggccgtgtcg tcccaacttc ctactgacgc ccgcccggcc gaagtatcga caccgacccg      7260
     cggtaagatc cccatgtatg ccaccgtcgc cccccctaaa attcggcgaa ctcaagccac      7320
     aagtacccac cccatacctc gtccacggga gtacggatcg ggtgacgagt gaaaaaaaaa      7380
     aaaaaaaaaa acctggactc aacaaaaaaa aagagaataa aattaaatta atatagagga      7440
     acacacaaaa aaaaaaaccc caatcatcca tttcttattt aattcttttc cccatacact      7500
     tacgtaatgc actttcgcaa cctcacttgc tgacactata gtttttaagt gtgccgaccg      7560
     aaggcggcaa accctttaaa aagcttaagt tagatccata aggtaactca taagagaatc      7620
     ggcaacgctc ctcaccgcac gaacaccaga agtatcaacg atgcatcccc agaaagccgc      7680
     agcacccacc gaggcaccgg aggttatcta cgttgacctc actaccgact ctgaagatga      7740
     gtcaggggca cacgcgttca ggagaaccga agccccaccg tcgtccaaga acggagacca      7800
     tcgtccgccc ccgttcgtcc cagcacccaa cgacgaacca tcgtggtcaa ccgccagcac      7860
     ccctctccgc gacgaagagc cggaaaacgt cccggtctcc aacggagacg catacgccga      7920
     taccaggcgg gacgaaccaa acgacgaatc ggacggagaa ttctcggacg aagagaattc      7980
     cgacggccca cgagatagcc ctccgctatt ctcgaggcga caatccagat ttcgacgtga      8040
     aaatctgtgg tcgccgccaa tgttccgacg ccgtgacccc caggcctacc actcgccaag      8100
     cccggagcct ccatcgttcg caccaatgtt cgaacacgcg taccggcagc acgacccccg      8160
     agactattcc aaccccgagt gggccccgga atattaccac cgggactacg cccacgcgtt      8220
     ctctgacgac gaggagaacg aagaggaaga acccttcgcc cgccggctcg tgaccgatac      8280
     agagacgttc caccacacgg tcacaccgtg gggtatgcgc gtcactcggg tccatcacat      8340
     aacggtggat ctgctcgttc cgccaagtcg gaacagacac gcattcttcg aaacgttccg      8400
     ggagcccacg gaggccctct acgaccgacc tgccttcccc gtcccagacg cagttgaaac      8460
     tcccccagag gaggtagagg cgccaacgac aacatccacg acatcggcaa cgccaacaac      8520
     atcgccactg gtgtcgacga acccggaaac aagcggaagg gcgacaaaac gacgaagaca      8580
     ctctgacccc tcaacaacgg cgcacaccca gcacgaacca gcgataagca cggcaacaca      8640
     cgccaaggta cttcacaccg aatcgagcct gaatcaagcg ccagatatcg acttcttcac      8700
     ctcagagacg caacgcgtcc tgggaacaac gacaagcctc tcgcccccag tagcgaccag      8760
     agacttcgac gacatatccg tcgaagaact actgaccgta actgcggaaa accaacctag      8820
     agtggacgac gaagacctcg aggagctgct aagcttctta gaggaagact tcccactagt      8880
     cgaccaaagg ccggaagacg acggcctggc cgaagagatc ggaagggacg ccggctgggt      8940
     aatcgccccg atcgactggc aggtcgacac cccgggccga gtagtgccta ctggcctggt      9000
     cgaggaggtg caaggtcgca tgcaacgggc ggacaggatc cgctgcagcg tgtggatctg      9060
     ggaccaacaa taccaggtcc acaagcgatc actatctggg ccggtctaca tccacctcct      9120
     cccggaagaa agggggggg                                                   9139
//
ID   Gypsy-3_DAzt-LTR repbase;    DNA;    INV; 935 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-935
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 807-807 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 935 BP; 262 A; 272 C; 165 G; 236 T; 0 other;
     tgtaacgaac cttaagggga cgttacagtt cgccacgcca cacgggcaat ggaggagcgc        60
     aagctgcccg gttattttgt atgattaaga attacattta tataaactta agtcatacaa       120
     tacaatacac gattacgttt atataaactt aagtcataca atacaataca cgatacttgc       180
     caaaccaccc tctttccttc caccacacac gcgcaccgtt tcggccacac gattacccct       240
     accacacata tccatagctc cccacaccac aatgacctaa aaacttcccc ctcccactta       300
     agttcgatgc gatcattttc ttttcaacaa aagaaattgg ccatcaacgc ggagtcagca       360
     taatatcccc ccacccatag tttaagctag ctagttcgac ccgcggatgc taggtttcga       420
     gcgttctagc gaaagaagtg caagacactt actcgggaac ccggccgcga agtagacgtt       480
     gctccggaca gcaacctaga tttacctaat atacgtcgcc gcgtataagt ccacaaaaga       540
     aaacagttca ataaagtgtc aaccaattta aagaaacccc actgagtaag tctatttttg       600
     ggtgggcatt tacacgctaa ttcgctaaga ccgcggcacg ggcccaattc aattctcaat       660
     ttacctttga tcttccgata ggtcctacga gtgtgacaac gcctcgtatc ccttatatcc       720
     cccgacccca cgagtgtgac aacgcctcgt gtttctcgtt atcttcccag tctcaaccct       780
     gcttacacga ttacgcctca ttcccctcca ctcttgttcc tagtctcgtt agggccgacc       840
     ccgtttcctg tagaggttcc tgcaaactac aaatttcttg tagtaggatc ctggataaga       900
     ccgagcttac ctcagcctga aataggagcc tcaca                                  935
//
ID   Gypsy-3_DBi-I repbase;    DNA;    INV; 4817 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DBi_;
KW   Gypsy-3_DBi-LTR; Gypsy-3_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4817
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 825-825 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2399-2827] - Reverse transcriptase
CC   Positions [3955-4431] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1805..3403
FT                 /product="Gypsy-3_DBi-I_2p"
FT                 /translation="MRRRVFLKLGVGVGSLMGRQRVLTGIGESQVLTFGSF
FT                 ITNVVIDGIDMSVEFHVIPDDDMKFDAILGTTILNSVDMMVTKTGTIFSPT
FT                 VRNVQQRPTTGSDDNQAGQSTCMQLISEFESLCMISMKDSKTVSAVDLEHL
FT                 SQEVASEAESLIDNYKPERNLTSPVEMKILLTDELPVFQHPRRLAYCDQKI
FT                 VDDQVQEWLEEGIIKPSTSEFASPVVLVDKKNGKKRLCCDYRKLNEKIVRD
FT                 NFPTAQMDCVIEKLQGGRVFTTLDLTNGFFHVPVSPESQKYTSFVTQSGQY
FT                 EFLFVPFGITNSPAVFTRFIMAVMRDPIKNEDAVVYMDDVIISSKSIDEGV
FT                 QKLKRVLEVAQGNGLRINWSKCQVLKRKVNFLGYVVENGTIKPGNEKTQAV
FT                 ADFPVPRDKKGVQRFLGLTSYFRRFVEGYAVIAKPLSDMLRKEVRFEFQDQ
FT                 QLAAFKKLKEALISGPVLKLYNHSLDTEIHTDASKFGFGAVLLQRDPCDNL
FT                 WHPVFYMSRKTKPCEEKYHSYELEVLAVIGALVKWRV"
FT   CDS           3454..4869
FT                 /product="Gypsy-3_DBi-I_1p"
FT                 /translation="MTMKKKEIPLRVSRWAMYLQDFDYEIEHRSGAKMRHV
FT                 DALSRVSCYTLTDSLFHRLREAQLLDDWTKALKSVVETKGYEDFYIVNEVL
FT                 FKDPNKELLVVPSLMETEIIQNGHRQGHFSSKKTQDLIEKSYYIPKLKDKV
FT                 ARVVDSCVECILVNAKAGRQEGFLTPIDKGDKPLVTYHVDHVGPMELTKKR
FT                 YNHIFVIVDAFSKYVWLYPTRSTGVEEVVTCLERQAVCFGNPYRIVSDRGA
FT                 AFTSHLFKEYCDREKIQHLLIATGVPRGNGQVERMHKIVVPMLSKLSLESP
FT                 GCWYKHVGKVQQIINNTEPRSTKVSPFKLLTGLDMRISGDVQLRSLIQDCL
FT                 IAELDEDRDKLRMEARENIQSIQAENKKAFDAKRKVEKKFQLNDLVAIKRT
FT                 QYGAGLKLKGKYLGPYKVVKVGNHGRYEVERVGEGDGPYKTSTVAEYMKAF
FT                 GTNPASGGPIVGCGTGETRTTRSGLTY"
XX
SQ   Sequence 4817 BP; 1471 A; 857 C; 1309 G; 1178 T; 2 other;
     atttttgggg gctcaaccga gatatagcct accattcgac agaactttca ccttggcaaa        60
     aacacgtgga gtgcgtaagc agagagctgg tgaaattgag caaatcggct agatatcttc       120
     aaattgtcat aagcaatttg gctggaatgt gacaaagaaa gctggcgcag gaagcagaca       180
     cagttggtgg cttttgcaaa ggcaagaact tggagaacta gcggacgaag tgctggaagg       240
     attaggaggc agcggatcgt ggctggagac ataggagaag cagcagacac gggctggaag       300
     cagtgaagac acagcgatca agacattgga tctggtgtgg ttatcggagc gtgcgtgcag       360
     gattgtgcaa gcggaaggct ggtgcacaga tcttggcagc agacgaaagc atccagaaag       420
     ttccagttga gtttggaagt cttcattgta tgtgtgacgc tgcaaaagcg ggaagcgtgg       480
     gaaggaaaga cgacgacgaa caaaagcgac atcattgagc gagtggctga acttttggcg       540
     gagtgttgcc ggaaagttaa tttcaagttt tgtaaagtag tggggtaaca ttggaatcaa       600
     gcagttccag agacagggtg gttaatctat ttacaatttg cttttgatac taaatttaag       660
     aaaacattgt ttaatcttaa taatctacag gacaagttgt aaaatggaga gaagcgagat       720
     cttggcactg cgagttgaag agttgcgtcg gaagttgtcg gagttgcaat tgggtacgac       780
     tggattgaaa gcggaattgc aagagaggtt gttgacctac cacggtctaa ataacgatgg       840
     tgagtcggaa acggaggata atggtgaaga tggtctatca gtaacgtccg cagaaaccac       900
     tataaatcgg ccaaacgcag caggttggca tcaaggacta ggaaatgaaa ggcagggtag       960
     atcatggttc acgttgaaag atgtagaggg cagtgtttcg cagttttctg ggtcgagttc      1020
     cccagatata aaccaatgga taggagagtt ggaagattgt gcagctacag ttgagtggaa      1080
     ccctttacag ttgtttgtgt atgcaaaaca gttgcttagt ggagcagcaa agatgtttgt      1140
     gcgtagccag aggaatatca aagactgggc aagtttgaaa tcggttttgg tggaggagtt      1200
     cggaatcaag ttatcctcag cagaagttca tcgcaggttg ggaaaacgac agcagcataa      1260
     gggtgaatcc ttacacgagt tcctttatgc acttatggaa atkgcaaagc ccatttgttt      1320
     ggaggaagaa agtttgatcg agtatttcgt tgagggtatc ccagatgcta gatcaaataa      1380
     ggcaatgcta taccaggcca gaaacctaag gatcttaagt tacaatcgac gcatatcaaa      1440
     aatcgcgtgg atcatccaaa ccagtaaaca agtatggctc gcagggtagc aaggctgtgc      1500
     acgacacaaa acaagattcg gtagctggat cagttaggaa atgttttcgg tgcggagatt      1560
     cgtcgcacat gaagaaagac tgtcccgtga aggagaaatg tttcaaatgt gatcagccag      1620
     gacaaccgag tgtaaagcag aagtacaggt caaaacagag agagcaacca atgtcgtcca      1680
     ggacgataaa gtcgtttcac aaccatcgcg cgagtccttt tcttcgagct tggaattgaa      1740
     atctgtgatt tgcaggaatt cagaattcaa aggacttgtg gacacaggtg ctgaactgtg      1800
     tttgatgcgt aggcgtgtgt tcttgaagct aggcgttgga gtaggcagtc tgatgggtcg      1860
     tcagagagtt ttgacaggta tcggtgaaag tcaggtgctg acattcggaa gcttcatcac      1920
     aaacgtcgtg atagatggaa tcgacatgtc ggtcgagttt catgtcatac cagatgacga      1980
     tatgaagttt gacgcaatct taggcacaac aatcttaaac agcgttgaca tgatggtaac      2040
     caagactggc actatatttt cgccaacagt tcgaaatgtt cagcaaagac caacgacagg      2100
     atcagacgat aaccaggcag ggcaaagtac ttgtatgcag ctaattagtg aattcgaaag      2160
     tctgtgcatg atcagcatga aagactctaa gacagtctcg gcagtagatt tggagcattt      2220
     gagtcaggaa gtagcttctg aagcggagtc attgatcgat aattacaagc cagaaagaaa      2280
     tctcacttcc ccagtcgaga tgaagatctt gttgacagac gagttgcctg ttttccaaca      2340
     tccgagacga ttagcttatt gcgatcagaa aattgtcgat gaccaggttc aagaatggct      2400
     agaggaaggg ataatcaagc ctagtacatc cgagtttgct tcgccagtgg tgcttgtaga      2460
     taagaagaac gggaagaagc gcttgtgttg cgattataga aaattaaatg aaaagattgt      2520
     ccgagataac ttcccaacgg ctcaaatgga ctgtgtgatc gaaaagctac agggtggacg      2580
     agtttttaca actctagatt tgactaatgg cttctttcac gtgcctgttt cgccagaatc      2640
     ccaaaagtac acatcgttcg taactcagag tggtcagtat gagttcctgt ttgtgccctt      2700
     cggtataaca aactctccag cagtgtttac caggtttatc atggcggtta tgcgggatcc      2760
     gattaagaac gaggatgcgg ttgtatacat ggacgacgtg ataatttcga gcaagagtat      2820
     cgatgagggc gtgcagaagt tgaagcgagt tttggaagtg gcacaaggaa atggcttgcg      2880
     cataaattgg agtaaatgtc aggtgttgaa gcgcaaagtt aacttcttag gctacgtcgt      2940
     tgaaaacggt accatcaagc cmggtaatga gaaaactcaa gcggttgctg actttccggt      3000
     tccgcgcgac aagaaaggag tccaaagatt cctaggtttg acgtcgtatt tccgtaggtt      3060
     cgtggaggga tacgccgtaa ttgccaagcc gttgtccgac atgttgcgca aggaggtgag      3120
     gttcgagttt caagaccagc aattagcagc atttaaaaag ctaaaagaag cgttgatcag      3180
     tggaccagtt ctgaagctct ataatcattc gcttgacaca gaaattcata ccgatgcatc      3240
     caagttcgga tttggagccg ttttgcttca acgagatccc tgtgataact tgtggcatcc      3300
     agttttctac atgagccgta aaaccaagcc atgtgaggaa aagtatcatt cctatgaact      3360
     ggaagtactt gcagttattg gagccttggt aaagtggcgg gtgtagtttt agggaagaag      3420
     tttaaaatta ttacagattg taatgctttt gccatgacca tgaagaagaa ggagattccg      3480
     ctcagagtgt ctagatgggc gatgtaccta caagatttcg actacgaaat agaacacagg      3540
     tcaggtgcta agatgagaca tgtcgatgcg ctgagtaggg tgtcatgtta tacgttgact      3600
     gacagtttgt ttcatcgttt gcgggaagca cagcttttag atgattggac gaaggcgctc      3660
     aaaagtgtcg ttgagaccaa aggctatgaa gacttctaca tagtgaacga agttctgttc      3720
     aaggatccta acaaagagtt gctagtagtt ccttcactca tggaaactga aatcatccag      3780
     aacggtcaca ggcaaggaca tttctcatcc aagaaaactc aggatttgat tgagaagtcg      3840
     tattatattc cgaagcttaa agataaagta gcgcgagtgg tcgatagctg cgtagagtgc      3900
     atccttgtga atgcgaaggc tggtaggcaa gaagggttcc ttacaccaat agacaaagga      3960
     gacaagccgc tcgtcacata ccatgtagat catgttggtc cgatggagtt aaccaaaaaa      4020
     cgatataatc acattttcgt gattgtagac gccttttcca agtacgtatg gttgtatcct      4080
     acacgaagta caggggttga agaagtagtg acttgcttgg agcgccaggc tgtttgcttt      4140
     ggaaatccgt ataggatagt gtcagatcgt ggagctgcat tcacatccca cctgttcaag      4200
     gagtactgcg atagggagaa gatccaacat ttgctgatag caacaggcgt accaagggga      4260
     aacggacaag tagaacgcat gcataaaata gttgttccga tgctctcaaa actaagcctt      4320
     gaaagcccag ggtgctggta taagcatgta ggtaaggtac agcagatcat aaacaacact      4380
     gagccaagga gtacgaaagt ttcaccattc aaactgctaa caggattaga tatgcgtatc      4440
     tcaggagatg tccagctcag gtcattgata caggattgtt tgattgcaga gttagatgag      4500
     gatcgcgaca aactgaggat ggaagcaagg gagaacattc agagtatcca agcggaaaac      4560
     aagaaagctt ttgatgcaaa aagaaaggta gaaaagaagt tccagttaaa cgatttggtg      4620
     gctattaaac gcacccagta tggtgctggt ttgaaattga aaggaaagta cctagggccg      4680
     tataaggtag tcaaagtagg aaaccatgga agatacgaag ttgaaagggt aggagaaggt      4740
     gatgggccgt ataagacatc aaccgtcgca gagtacatga aggcattcgg gacgaatcct      4800
     gcgtcaggag ggccgat                                                     4817
//
ID   Gypsy-3_DBi-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DBi_;
KW   Gypsy-3_DBi-LTR; Gypsy-3_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-292
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 826-826 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 292 BP; 87 A; 66 C; 59 G; 80 T; 0 other;
     tgtgggatgc ggtactggag agacaaggac cactagaagc ggtctcacct actgatctaa        60
     tatctttccc tttctgtact cgatattcct aagttgtatt cgatacccag ttgcaacgtg       120
     agtgaaaagt ggcaacgcac cgccgtactc actcgctgcc agaatctcgc aaaggacagt       180
     tctatagcac acgtgtattt tgtaaaacct aagttaacaa gtcgaatgtg aataaagcat       240
     atcatcatac tatttaagtc agcgttatct tttctaaaaa gaggaccctg ca               292
//
ID   Gypsy-3_DBp-I repbase;    DNA;    INV; 4985 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DBp_;
KW   Gypsy-3_DBp-LTR; Gypsy-3_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4985
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 657-657 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2555-3097] - Reverse transcriptase
CC   Positions [4112-4588] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 94% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1091..4984
FT                 /product="Gypsy-3_DBp-I_1p"
FT                 /translation="MAFTLRDIEDSLSAFTGNGSPDIDEWLADFELNSITV
FT                 GWTDLQKFIYGRQLVKGAAKLFLGSQPGINDWDALKEALKNEFGEKPTAKQ
FT                 VHKMLENRKKTQKESLLEYFYSMTALANQSKLDEESIIEYIVEGIPDSKQN
FT                 KNCLYQASNLKEFREKLKVYEKICASQGFKPKPKFDSSLVKTNQDGRRCFK
FT                 CGGSNHIAKDCKEVGIKCFKCNQIGHKANQCGTKEARKEVKNENSNIQQLS
FT                 QSTFNRAFKNINIGNDQITALFDSGSDICTISETAYTRIYPDILKPDIKEL
FT                 MGIGGKKIYTLGSFTVATKLDDADVDMCFHVVRDNDTLYEGVIGSDVLNMV
FT                 TATIGAKGVVFHAVHSVDLDHISDPTLGRDENSPSHDIDLTHYSVNQNVAV
FT                 DATSTSISDLTETFYQLMASNFIEDIVPDLDLLHLSTDIRSAVVGLVQNYK
FT                 PLKPESSPVEMKLLLTDEIPVYQRPRRLPYEETEKVDKQIRDWLKEGIIRQ
FT                 SVSEYASPIVLVAKKDGTKRLCCDYRKLNQKIIRDNFPMALIDDVLHKLQK
FT                 GKVFTTLDLSNGFFHVPVQESSRKYTAFVTQSGQYEFCFVPFGISNSPAVF
FT                 MRYIFAVLRPLIEDGTLILYMDDLIIPSKDEQEGLEKLKTVLDIAMRSGLR
FT                 IKWEKCQVLKKRVQFLGYIVENATIQPSAEKTGAVENFPVPRDKKGVQRYL
FT                 GLTSYFRRFVKDFAIIARPLSNLLRKGTSFKMGEEELASFKQLKVSLTSSP
FT                 VLKLFDQKSATEVHCDASMYGYGAVLLQKDSADQEFHPVEYMSRKTTDAEE
FT                 KYPSYELEVLAIVQALKKWRIYLLGRKIKIVTDCNAFAMTMRKNDVPVKVS
FT                 RWAMFLQDFEYIIEHRPGTRMKHADALSRVHTLLLQDSVRHRIQQAQRQDE
FT                 WIKAICKVLETNTYDDFYLKHEVLHKDSIKELIVIPSVMENEIINTAHRQG
FT                 HFGVKKTIDLVQRDYYIPDLEKKAQTIVKSCVECIVGEAKYGKKEGFLNAI
FT                 NKADEPLQTYHIDHIGPMDMTKKQYNHVLVVVDAFSKFVWLYPTKSTGADE
FT                 VVDRMERQAEVFGNPSRIITDRGTAFTANVFQEYCKDHNIQHLLVATGVPR
FT                 GNGQVERINRIVITILTKLCAEDPKAWYKHVGRVQQFINSSPPRSTKIAPF
FT                 KILTGINMKTKYDKELEKLLEEDFLNELQEEKEMIREEAKENIAKIQDENR
FT                 KSFNKSRKPESEYKLGDLVAIKRTQFGAGLKLKKKYLGPYAVTRKLRHGRY
FT                 LVEKVGDDEGPNKTNTVAEYMKLWSSYSGRMNCQNSR"
XX
SQ   Sequence 4985 BP; 1684 A; 922 C; 1143 G; 1236 T; 0 other;
     attttggggg ctcaaccggg atgcaatcca aaaacgtgcc aatttgagtg tgatacgcgg        60
     ccaaacaacc atcaagtttt tgtgctaaga atccatcgat cgcagtttaa taattaaaac       120
     taaacggaga aaataaaagt tataaaactg aagagattac gagacaaaaa accatccaga       180
     agagctgaga attttcatat tgcgcaattc caccaagttt tgcaaagtat tgtgaaattc       240
     tgcaactaca aaactacaaa ctacaaaact acgaagtttg cgagtgtgag agcaaaattg       300
     gttctgtggc gacaagtaaa ttcctaacgg aagacgacga aaggcgttta tacgatccgt       360
     tgtcgcagag agcgacaata atggctaaag cgacaacttg accaggagga gaacttggaa       420
     acgtaaaatc tggaggagat tacgacggag cagagatcca gagaggagta ttgagacgag       480
     gcggcaaagt gacgtcactg gagttgaagg cgatattgaa ggcgcgagtg aagacgacgt       540
     tgataagcag ttcgaaaagc agttcgagaa gcagtcatca gagaggacaa cggtggcagc       600
     ttttagttca acgatttacc agagacgaat ttgaaaagca gtggcaaata tcagagatga       660
     gcaacaaaag acgagagaca gcaggcggtt cgcaagtata aatccataca agcattattt       720
     aattgatacc acgaatttga ggttaaacaa aacaatttat tgtaacgtaa acaatatttt       780
     attcccattt aaattgttca tttgagaaat attatattaa tctgagagaa aagtattata       840
     aaataagtta tgtaagtgta gaagatatga atgttgaaga gatcacacga ttttctgttg       900
     cggagctgag agacaaacta aaagaattaa gattaccaag ttcaggcctc aaagctgtat       960
     tacaggaaag actcatctcc tattttgagg gggaaaatat cgaccaagag gaaaactcag      1020
     aaagttcaga ggagtcagtg tacgaggaaa ccaacgtaga gtcgattctt ctaattctca      1080
     accctcagcc atggcgttca cactgagaga tattgaagat tccctttcag cgttcactgg      1140
     aaatggttct ccagatattg atgagtggct tgcagacttc gagcttaatt ctattacagt      1200
     tgggtggact gatcttcaaa aattcattta cggcagacag ttggtaaagg gagctgcaaa      1260
     attattcttg ggtagccaac caggaataaa tgattgggat gcattaaaag aagctctaaa      1320
     aaatgaattt ggagagaagc ctacagcaaa acaggtgcac aagatgctcg aaaataggaa      1380
     gaaaacgcag aaagagagtt tgctagaata cttctacagt atgaccgcat tagcaaatca      1440
     gtcaaagttg gacgaagaaa gtattataga atacatagtg gagggtatac cagattcgaa      1500
     gcaaaataaa aattgtctgt accaggcgtc caatcttaag gagtttcgtg agaagcttaa      1560
     ggtttacgag aagatttgcg cgagtcaggg gtttaaacca aagccaaaat ttgacagttc      1620
     tttagtcaaa actaaccaag atggcagacg ttgctttaag tgtggcggca gcaatcatat      1680
     tgcaaaggat tgtaaggaag taggtataaa atgtttcaaa tgcaatcaga taggtcacaa      1740
     ggcaaatcaa tgcggtacca aggaagctcg taaggaagtg aaaaatgaaa actcaaacat      1800
     tcagcagctg tcacagtcaa cttttaacag agcgtttaaa aacattaaca ttggcaacga      1860
     ccagattacg gcgttattcg attctggcag cgatatttgt accatttccg agacagcgta      1920
     cactcgcatt tatcctgata ttctcaaacc tgatattaag gagcttatgg gaataggtgg      1980
     taagaagata tacactctag gctcattcac agttgcgacg aagttagatg acgctgacgt      2040
     tgacatgtgc tttcatgtag tgcgtgacaa cgataccctt tatgaaggtg tgatcggtag      2100
     cgatgtcctt aatatggtaa ccgcaacaat tggagcaaaa ggagtcgttt tccacgcagt      2160
     tcattcagta gatcttgacc atatctccga tcccacctta ggtagagatg aaaatagtcc      2220
     aagccacgac atagatctca ctcattatag tgtcaatcaa aatgtggccg tagatgcgac      2280
     ttccactagc atttcagact tgacagaaac tttctatcaa ttaatggcat ctaatttcat      2340
     tgaagacatt gttccagatt tagatctgct tcacttgagc accgacataa gatcagcagt      2400
     ggttggatta gttcaaaatt acaagccatt aaagccagag tcaagcccag tagaaatgaa      2460
     attgctcctc acagatgaaa tcccagtcta tcagagacct aggcgcttac cgtacgagga      2520
     aactgagaaa gttgacaagc agattaggga ttggctgaag gaaggaatca ttcgtcaaag      2580
     tgtttccgaa tacgcttcac ccatagtttt ggttgcaaaa aaggatggca ccaaaagact      2640
     ctgttgcgac taccgcaaat tgaatcagaa gattattcgt gataatttcc ctatggcctt      2700
     gattgacgat gttttacata agcttcagaa gggaaaagta tttacaacgt tagacttatc      2760
     aaacggattt ttccatgtcc ccgtgcagga aagctctcgc aaatacaccg cgttcgtcac      2820
     ccaaagcggt caatacgaat tctgcttcgt accattcgga atttccaatt cccctgcggt      2880
     gtttatgcga tacatttttg cagtgctcag gccattgatt gaagacggta ccctaatcct      2940
     gtacatggat gatttgatta ttccatcaaa agacgaacaa gaaggtttgg agaaattaaa      3000
     gacagtttta gatatcgcaa tgcgttcagg tctgcgtatt aagtgggaaa agtgtcaggt      3060
     tttaaagaag agggtccaat tcctgggcta tatagtcgaa aacgcaacta tccaaccatc      3120
     agcagagaag actggtgcag tcgaaaactt cccagtcccg cgagacaaaa aaggagttca      3180
     acgatatctt ggcttaacat cctatttccg aaggtttgtg aaagacttcg ctattattgc      3240
     cagaccattg tcgaacttgc ttagaaaggg cacttccttt aagatgggcg aggaagagtt      3300
     agcatcgttt aagcaattaa aagtatccct gacaagttcg cctgtactga agttattcga      3360
     tcaaaagagt gcaacagaag tccattgtga tgcaagcatg tacggatatg gagcagtcct      3420
     tcttcaaaag gattcagctg atcaagaatt ccacccggta gagtacatga gccgcaagac      3480
     aacagatgcc gaggagaaat atccttctta tgagctagaa gtactcgcta tagtacaagc      3540
     tctaaagaag tggagaatct acttgctggg gagaaagatt aagatcgtca ctgactgcaa      3600
     tgcgtttgct atgaccatgc ggaagaatga tgtcccagta aaagtatctc gttgggccat      3660
     gtttttacaa gactttgagt acataataga gcatcgtcca ggcacaagga tgaaacatgc      3720
     cgacgcctta agccgagtac ataccttgtt gcttcaagat tcagtcagac atcggattca      3780
     gcaggctcaa cgtcaggatg aatggataaa agccatttgt aaggtcctgg aaacaaatac      3840
     ctacgatgac ttctatctga agcacgaagt tctccacaag gattctataa aagagctcat      3900
     agtgatccca tcagtcatgg agaacgaaat aatcaacaca gctcaccgac aaggacactt      3960
     tggtgtaaaa aagacaattg acttggtgca gcgcgattat tacatcccag atttagagaa      4020
     gaaggctcaa actatagtga agtcctgtgt agagtgcata gttggcgagg ctaagtatgg      4080
     gaaaaaagag ggattcttaa acgcaataaa caaggcagac gagccgttac agacctatca      4140
     tattgaccac attggcccca tggacatgac aaaaaaacaa tacaatcatg ttttagtagt      4200
     agtcgacgct ttctctaaat ttgtgtggct ttaccccact aagagtactg gcgctgacga      4260
     agtagtggat agaatggaaa ggcaggctga agttttcggt aacccaagtc gtataatcac      4320
     ggatcgtgga acggcattca cagccaatgt ttttcaggaa tactgtaagg atcacaatat      4380
     tcagcatttg ttggtagcca caggagtgcc acgtggcaac ggtcaagtag agcgtatcaa      4440
     taggattgtc atcactatat tgacaaaact ttgtgcggaa gacccgaaag cttggtataa      4500
     gcatgtaggc agggttcaac agtttattaa ttcctcccca cctagaagta ccaagatagc      4560
     tccattcaag attcttactg ggatcaatat gaagaccaag tacgataaag agttagaaaa      4620
     gctgttagag gaagatttcc taaatgagtt acaggaagag aaggagatga ttcgagagga      4680
     agctaaggag aacatcgcaa agattcagga cgagaatcgc aagtcattca acaaatcaag      4740
     aaagccagag tctgagtaca aactcggaga tttagtagct attaaaagaa cgcagtttgg      4800
     tgcagggttg aagttgaaga agaagtactt agggccgtac gccgtgaccc gtaagttgag      4860
     acatggtcga taccttgtcg aaaaagtagg agatgatgaa ggtccaaata aaacaaacac      4920
     tgtcgccgaa tatatgaagt tgtggtcgtc ctattcgggt cgaatgaatt gtcagaatag      4980
     ccgaa                                                                  4985
//
ID   Gypsy-3_DBp-LTR repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DBp_;
KW   Gypsy-3_DBp-I; Gypsy-3_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-266
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 658-658 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 266 BP; 97 A; 42 C; 48 G; 79 T; 0 other;
     tgtaggattg gcagtcctat tttataatcg ataagttgtt ctgttccatc acacttttct        60
     ttagtgttaa aaagcgtgaa aaatgagaag gagtagagat tgagcatcag cagaggaagg       120
     tcgcgtgtat ctccagtata tctaaaatgt taaactaagc aaactgtaaa ctaactaagt       180
     aaactaaact gtatcaaaaa ctatattcat cgaagaataa atcgtgtcta ataatttaac       240
     gaagtcaacg gaagcctttc tctaca                                            266
//
ID   Gypsy-3_DEl-I repbase;    DNA;    INV; 6549 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DEl_;
KW   Gypsy-3_DEl-LTR; Gypsy-3_DEl-I.
XX
NM   Gypsy-3_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6549
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 514-514 (2012).
XX
RN   [2]
RP   1-6549
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           165..1490
FT                 /product="Gypsy-3_DEl-I_1p"
FT                 /translation="MMSNPKESDGEYEEADFVKNPGIGVRWIYARRKDELS
FT                 ALALEFGFKADGTVEETRKAFANLVNTGSFPQSVWDRLAQLQVQYSSRAPS
FT                 PNPPGRNGETGQFAESLTIPMTAGATSIGTPARHRGIHPGSTHGXWMPPVD
FT                 ARLPADLQGQDTRSSTAPTQHLLPEKMHKWNLRFDGSSDPLTLIAALEEKM
FT                 TTYRINPEEVPRVMSEILEGPAARWFRTSHLQSASWGTFRREFLDFFLPPR
FT                 YFERLEDEIRTHVQRRGEPFKTYLIELRTKMQQAGYREEEELYRAYENMAP
FT                 EYRLYIKRSEFATLTQLTHMATEYESVKQLETTRREPKATMDRKQEEPQLR
FT                 RSPNPFRNPVNSTQTGHVTHQMIGQGTSRVDIRRACNRCGENGHLQRNCPN
FT                 PRRDFCWDCGRPGVLTIECCRRNASGNGERLRRNPGAAETNGAATRPQ"
FT   CDS           1400..4753
FT                 /product="Gypsy-3_DEl-I_2p"
FT                 /translation="MLPSKCVGKRRTPPPEPGCGGDERSSNPTPVKPPLRL
FT                 HGGLITAAIEVGGQRVDATIDTGASRSFVSESFTRLAARADELQDVVTRIA
FT                 LADRSCLDVTKLWRTSVTLAGTTVLLPMLVMPTMLDRVILGMDFLKVAGTQ
FT                 VRCGRATLDLQNEAQAAGDHFLQPVLIKARGNQEKTVHPVAVGAHLGTARP
FT                 EEAEIPSPIPTRTITPNINAGAPTRTGTVEDEEQRQSTLLSPAQQSFIDRE
FT                 LALFEKLHGVSHVAEHTIVMRDDKPVKQRYYPRNPAMQHVIDAQVDELLRD
FT                 GAIEPSRSPHSAPIVLVKKKTGDWRMCIDYRQLNAHSVPDAYPVPRINHIL
FT                 EKLRHARYISTLDLKHGYWQIPMARDSRQYTAFTVPGRGLYQWKVMPFGLH
FT                 SASATFQRALDSVIGVEMEPVAFAYLDDIIIISATEEQHFTHLSEVFRRLR
FT                 AANLRINPKKCCFFKQKLVYLGHVISSDGIQTDPEKVSAINGLKAPSNLKE
FT                 LRQWIGMASWYRRFVPSFATIVQPMTALLKKGRKWTWGPEQQAALEEIKRC
FT                 LTTAPVLGCPDFDQKFILQTDASDVGLGVVLSQGSESQEKVIAYASRRLTP
FT                 AEQNYTTTEKECLAIIWAIRKMRCYLEGYRFEVVTDHLALKWLNSIESPSG
FT                 RIARWALELQQFQFDVRYRRGKLNVVADALSRQPCEILQGAVELEDHCDWI
FT                 KKMKEQIQEEPEKFADYMIENDQLYRNMGYRADDEDYFPWKLCVPTSRRSR
FT                 VLRECHDSPTAGHLGVRKTITRLTQRYFWPGMYRDAKRHVRHCESCQKFKT
FT                 EQTKAAGKMLTRVVSEPFDILCADFVGPLPRSKQGNTMLLVFHDVFSKWVE
FT                 LIPLRKATAAQVQKAFRERILARVGIPRKFVCDNGTQFTSRVLKDYFTKLG
FT                 VEVQYTAPYCPQENPTERTNRTVKTLISQLSEGDQSSWDNMLPEISLAINS
FT                 SVSDSTGYSPAFLTQGREPRLPAMLYDELTPGSAVVHTGPEDKASHLKGIF
FT                 DIVRANLQRASQDQARHYNLRRREWRPTLGGQVWLRQHPLSKAAEGFAAKL
FT                 APKYDGPYTVTKFTSPNLVRLQRPGDRRRRIANISQLKPYYAEAPPDRIDD
FT                 SIVGSNDPMQ"
FT   CDS           4978..6546
FT                 /product="Gypsy-3_DEl-I_3p"
FT                 /translation="MDEVIVLSDDSNDTEVFHMETGHHDGGDEAMEGEFLT
FT                 SDGETDGSSVETDDCSQAPEGSRFAGLRGGLWSPRPDGSRQYHHPTSPQSA
FT                 PYRLEDDEDDASDQDSEMFSRPPRSRESSPGGSSGYPNGRRPGEPYYTESR
FT                 RPTSEEEYPWTRRDPRSGHPGYPRPSPPRFPDVEHSYHHTSEDQVCRYAGH
FT                 VSFMRIDVRSVVVKVPGLPAEGPYVDEPPSPPLPPALENSRAMDPDVDVEK
FT                 AVGERIGQPRTPPRRTVVPPVSVSLGVQTSPVVERVKETKMSSQSTQTSPA
FT                 NQVRVQEVEPVQEAGLPEPRVITSDSPDPVYLAGFELISDSEDDEGERPLF
FT                 RRCFQTSPQQDLRDVDTSARSRPDYPYRGDAGQRWDGAVDPQHFPSCAHPI
FT                 DQLTEWEDRLLDQVLMDISEIDSTESAARDTPPNATTTDGVEAVSNSALEL
FT                 TEPAGGEDDLCPLPEGWIGGSGLRYLPRRIVQEIQRKVATRAGRGRRVRIA
FT                 IGGDGLRFIVTIKSDGRLFIAPREERG"
XX
SQ   Sequence 6549 BP; 1713 A; 1795 C; 1806 G; 1234 T; 1 other;
     agtggcgccc gagcagggac accgagacta gctagagaat cacccaagtg gcttaaagac        60
     ccactgaaga aaaggaaggg tagagtcacc cgaaccgatc tccggaagga tctagaagac       120
     ttgagaagga agttcacgcc aaactaaatc gaagaggata accaatgatg agtaacccta       180
     aggaatctga cggtgagtac gaagaagccg attttgttaa gaatccaggt ataggagtcc       240
     gctggatata cgctcgccga aaagacgaac tcagcgctct cgccctggag tttggtttta       300
     aagccgacgg aaccgtcgag gagaccagga aggcattcgc caacctcgtc aacacagggt       360
     cgttcccaca aagtgtgtgg gaccgactgg ctcagttgca ggtgcaatat agtagccggg       420
     ccccaagtcc gaaccctcca ggcaggaacg gtgagacggg acagttcgca gaatccctca       480
     ccattcccat gacggccgga gccacatcga tcgggacacc agcccgccat cgagggatcc       540
     acccaggatc gacgcacggt asctggatgc caccggtaga cgcccgctta cccgccgacc       600
     tacaaggaca agacacacgg agcagcacgg ctccaactca acatctgctc cccgagaaga       660
     tgcacaaatg gaatttacgg ttcgatggga gttcggatcc gttgactctc atcgccgcgc       720
     tcgaggaaaa gatgacgact tacaggataa atccagagga ggtaccccgc gttatgtccg       780
     agatcttgga gggcccagcg gcacgatggt ttcgcacgag ccacctacag tcggcctcat       840
     ggggaacttt caggagggaa ttcctcgact tcttcctacc acctcgatat ttcgagcggt       900
     tggaagatga gatacggacc cacgtgcagc ggagaggaga gcctttcaag acctacttga       960
     tcgagctcag aaccaagatg cagcaagccg gttatcgaga agaggaagaa ttgtaccggg      1020
     catatgaaaa catggctcca gaataccgac tgtatattaa acgcagtgaa ttcgcgactt      1080
     tgacacaatt gacccatatg gccacagaat atgagagtgt caaacaactc gagacgactc      1140
     gacgcgagcc aaaagcaacc atggacagga agcaagaaga acctcaactt cgccgatcgc      1200
     cgaacccatt ccggaatccg gtgaattcaa cgcagacagg acacgtgacc catcagatga      1260
     tcggtcaagg aacctctcga gtagacataa ggcgggcttg taatcgctgt ggagagaacg      1320
     gacatctcca aaggaactgc cccaacccac gtcgggattt ctgttgggac tgtgggcgac      1380
     caggagtttt aacgatagaa tgttgccgtc gaaatgcgtc gggaaacgga gaacgcctcc      1440
     gccggaaccc gggtgcggcg gagacgaacg gagcagcaac ccgaccccag taaaaccccc      1500
     gttgagatta cacggcgggc tcatcacagc agcgatagaa gtcggaggac aacgtgtgga      1560
     cgccaccatt gatacagggg catcgaggag tttcgtcagt gaaagtttta ctcgactggc      1620
     cgcgcgtgca gacgagttac aggatgttgt cactagaata gcgttggccg atcggtcatg      1680
     tctggatgtg acaaagctct ggcgaacctc ggttacgttg gccggcacta cggtgctctt      1740
     acccatgtta gtaatgccca ccatgttaga tcgtgtaata cttggaatgg acttcctcaa      1800
     agtagcggga actcaggtgc gatgtggtcg agctaccctc gacttgcaaa atgaagccca      1860
     agcggctgga gaccatttct tacagccagt acttataaag gcgcggggca accaggagaa      1920
     aacggtacac cctgttgcgg ttggtgccca tttgggaact gccaggccag aagaagcaga      1980
     gatacccagt cctattccca cgcgaactat aaccccgaac atcaatgccg gtgcgcccac      2040
     taggacgggg acggtagaag acgaagaaca gcgacagagc acattattga gtccggcgca      2100
     acaaagcttc atcgatcggg aactggcctt attcgagaaa ctgcacgggg tgtctcacgt      2160
     cgccgagcac accatcgtca tgcgcgacga caagcccgta aaacaaagat attatccccg      2220
     gaaccccgcg atgcaacatg tcatcgatgc ccaagtagac gaactgctcc gtgacggggc      2280
     catcgaaccc tccagaagcc cacacagcgc tcccatcgta ttggtcaaga agaaaactgg      2340
     cgattggcgc atgtgtatag attaccgtca gttaaacgca cactcagtgc ccgacgccta      2400
     cccagtcccg agaatcaatc acattctgga gaaattacgc cacgcccgat atatctccac      2460
     gttggacttg aagcacggct attggcaaat tcccatggct agggatagtc gccaatatac      2520
     agcgttcacg gtccctggga gaggattgta tcaatggaag gtcatgccct tcgggttgca      2580
     ttctgccagc gccacgtttc aacgcgctct ggatagtgta atcggcgtgg aaatggaacc      2640
     ggtcgccttc gcttacctag acgatattat tatcataagc gcgacagaag aacagcactt      2700
     tactcatctc tcggaagttt tccgcagatt gcgggccgcg aatttaagga taaatccaaa      2760
     gaagtgttgc ttcttcaagc agaaactcgt ctacctcggc cacgtcatca gcagtgacgg      2820
     aattcagact gatcccgaga aggtgtctgc gatcaacggg ttgaaggccc cctctaactt      2880
     aaaggaactc cgccaatgga tcgggatggc ctcgtggtat cggcgatttg tccctagctt      2940
     cgcgactatc gtgcaaccga tgaccgcgct actaaagaaa ggacggaagt ggacctgggg      3000
     accagaacag caagccgcct tggaagaaat taaaagatgc ctgactactg ctcccgtatt      3060
     aggctgtccg gatttcgacc agaagttcat tttgcaaaca gacgcgagtg acgtcggctt      3120
     gggcgtagtt ttatcacagg gctccgaaag tcaagagaag gtcatcgcat acgctagccg      3180
     ccgattaacc cccgcggaac aaaattacac taccacggag aaagagtgtc tggccataat      3240
     ctgggcaatc aggaagatgc ggtgctacct ggaagggtac cgattcgagg tcgttactga      3300
     ccatctagct ctcaagtggc taaattctat tgagagccct tctggccgaa tagcgcgttg      3360
     ggcgctagaa ttgcagcaat tccaattcga cgtacgctat cgacgaggta aattgaacgt      3420
     cgtggccgac gcactttctc gacagccttg tgagatactg cagggtgctg tcgaactcga      3480
     ggaccactgc gactggatca aaaagatgaa ggagcaaata caggaggaac ccgagaaatt      3540
     cgctgactac atgatcgaaa acgaccagct ctacaggaac atgggttacc gagctgacga      3600
     tgaggactac ttcccgtgga agctctgcgt gccaacttcc cgtagaagcc gcgtcttacg      3660
     tgaatgtcac gattccccga ccgcaggaca cttgggagtc cgaaaaacaa ttacgcgtct      3720
     gacccagagg tatttctggc ccggtatgta tcgcgacgcg aaacgccatg ttcgccattg      3780
     tgaatcttgt caaaagttta agacggaaca aaccaaagcg gcaggtaaga tgctaacccg      3840
     ggtcgtcagc gaacctttcg acattctctg cgcggatttt gtaggcccgc taccccggtc      3900
     aaaacaagga aataccatgc ttctggtgtt tcacgacgta ttttcgaaat gggtagaact      3960
     gataccactc cggaaagcca ccgcagctca agtgcagaaa gcgtttcggg aacgtatact      4020
     tgcacgagtg ggcattcccc ggaagttcgt gtgcgacaat ggaacccagt tcacaagccg      4080
     ggtcctgaaa gactatttca ccaagctcgg cgtagaagtc cagtacacgg ctccatattg      4140
     tccacaagag aatcccacag aaaggaccaa ccgcactgtg aagacgctga tatcccagct      4200
     gtcggaaggc gaccagagtt cgtgggataa tatgctgcca gagatatccc tcgcgatcaa      4260
     tagcagtgta tcggattcga cggggtatag tcccgcgttc ctaactcaag gacgggaacc      4320
     acgcttgcct gcgatgctgt atgatgaact gacccccgga tcggcggtcg tgcatacagg      4380
     tcctgaagac aaggcgtctc acctcaaagg catcttcgac atcgtacgag cgaatcttca      4440
     gcgagcgtct caagaccagg cgagacacta taacctacga aggcgagaat ggagacccac      4500
     gctcggcggt caagtttggc tgcgtcagca tcccttatcg aaagcagccg agggattcgc      4560
     cgccaaactt gctcccaagt atgacggccc ttataccgtt acaaaattca catctccgaa      4620
     cttggtacgc ctgcaacgtc ccggagatcg acggcgacgc atcgccaaca tatcccagct      4680
     caaaccgtac tacgcagaag cccctccgga taggatcgac gatagtattg tcggatcgaa      4740
     cgacccgatg cagtaagcgg catacagccg cagaatagta taacaactag tctagtaaac      4800
     attgtataac cactgtataa ccactgtata accaccgaat aaccattgtg taaccagtcg      4860
     agtaactatt gtataaccat tataatagat taaggccgag tcctttgtta gctacaccgt      4920
     caggtaggga gttcgaagag gtggggcaat atcaataagt taagtttacc gtttcagatg      4980
     gatgaagtaa ttgtgttgtc ggacgactcc aacgacacgg aggtcttcca catggagacg      5040
     ggtcatcatg acggaggcga cgaagcgatg gaaggggagt tcctcacgtc ggacggcgaa      5100
     acagacggta gctcggtgga gacagacgac tgttcccagg ctccggaagg atcccggttc      5160
     gcaggactcc gcggaggctt gtggagcccc cgacccgacg ggtcgcgaca atatcatcat      5220
     ccgacgtcgc cccagtccgc tccctaccgc ctggaagacg acgaagacga cgccagtgac      5280
     caggattcgg agatgttcag caggccccca cgttccaggg aaagctcacc aggtgggtcc      5340
     agcggttacc ccaacggacg acgaccaggg gagccgtact atacggagtc ccgacggccc      5400
     acctcggagg aggagtaccc gtggacccga cgcgaccctc ggtcaggcca tccgggttac      5460
     ccaaggccca gtcctccgcg attcccggac gtggaacatt cgtaccatca tacgtccgaa      5520
     gaccaggtct gccggtatgc gggacacgtc tcgttcatgc gcatcgacgt ccgctcggtg      5580
     gtagtcaaag tcccggggtt acctgcagag ggaccctacg tcgacgaacc gccatccccg      5640
     cctctgcccc cggcgttgga aaacagcaga gcgatggatc ccgacgttga cgtcgagaag      5700
     gcagtcggcg agaggatagg acaaccgagg accccgcccc gacgtactgt agtgcccccc      5760
     gtgtcggttt ctctaggggt tcagacatcc ccagtcgtgg agcgggtcaa ggagacgaaa      5820
     atgtctagcc agagtaccca gacctctccg gctaaccaag ttcgggtaca ggaggtagaa      5880
     cccgtacagg aagcgggact ccccgaaccc agggtcataa catcagactc cccggatccc      5940
     gtatacctgg cgggattcga actgatctcc gacagcgagg acgacgaagg ggaaaggcca      6000
     ttattccgcc ggtgtttcca gacgtcgccg cagcaggatc tgcgggacgt ggacacctcg      6060
     gccagatctc ggccagatta tccctatcga ggcgacgctg gacagcggtg ggacggggcc      6120
     gtagatcccc agcacttccc cagctgtgct catccaatcg accagctgac cgagtgggaa      6180
     gatcgcttgc tggaccaggt cctaatggat atttcggaga tcgattcgac cgaatccgcc      6240
     gctagggata ccccaccgaa tgccacgacg acggacggcg tagaagccgt gtcgaattcc      6300
     gcactggagt tgacggaacc cgcaggaggg gaggacgacc tctgcccgtt gccggagggc      6360
     tggattggtg gtagcggttt acgttaccta cccagacgta tcgtccagga gatccagagg      6420
     aaggtagcga cccgggccgg ccgcggacgc cgagtccgca tagccatagg aggcgacgga      6480
     ctccgcttca tcgtcaccat caagagcgac gggcgcctct ttatcgcgcc gcgggaagaa      6540
     agggggggg                                                              6549
//
ID   Gypsy-3_DEl-LTR repbase;    DNA;    INV; 1866 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DEl-LTR;
KW   Gypsy-3_DEl-I.
XX
NM   Gypsy-3_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1866
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 515-515 (2012).
XX
RN   [2]
RP   1-1866
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: sequence updated. ~98% identical to the consensus.
XX
SQ   Sequence 1866 BP; 440 A; 518 C; 450 G; 458 T; 0 other;
     tgtaacgtac acacttaggc gtacgataca atttttgaat aataatatgt taggttatag        60
     gtataagcgt cggaccgtga atattaaata ttaagttagt agtatgtaag ttataggtgt       120
     aagtgacaca taatgaataa taaattttaa gttgaaactg aatattaagc cgtagttaag       180
     ctaagttccg aacccgagtg gcaacgccag cagattttta gtgggtaagg aaaaatacta       240
     gaaattaaga aatatactag aaatcccgaa agcgggaaaa agggagcgtg gggaaggtgg       300
     tctcacaccg atcgagcagg cggtctctcg tgccggaaaa gtagaacgga gcggacgcgc       360
     ctcccttaac tcgcttgccg gataattcga gttacgcctc gaccgcgcga aggcacgcgg       420
     ttagtgaaga agtggactag tgagtgtgtt tgaggttagt gtatgcaaaa ttcctatccg       480
     tcaagcaaag acggtgtagc ggactcgtag gaagacagta gataaataaa aagataataa       540
     taataataat aaaatagaat aataaaacaa agtaaattcc atgatcgtga ttctttttat       600
     ttatagtagc ctagctccct tcctcgtagt gcatgtgacc tgtacgtgga catccgtccc       660
     gtccggtctg gtatcctaac ctcactcccc gtagtatttg ggacctgtac gtggacaccc       720
     ggcccgtctg gtccagtatc ttggttcccc acatcgtagc atttgagacc cgacgtggac       780
     acccatcccg ttcggtctag tatcttagat tcccccctcc ctcgtagtgc atggggcctg       840
     tacgtggaca tccgtcccgt ccggtccagt atcttaacct cactccccgt agtatttggg       900
     acctgtacgt ggacacccgg cccgtctggt ccagtatctt ggttccccat atcgtagcat       960
     ttgagacccg acgtggacac ccatcccgtt cggtctagta ccttagattc ccctcctcgt      1020
     agcgcatgtg acctgtacgt ggacacccgg cccgtctggt ctagtaccct agttttcctc      1080
     ctcgtagcgc atgcgaccgg cacgtggaca cccggcccgt ctggtctagt acaatagctt      1140
     tcctcttcgt agtgcatgtg acctgcgcgc ggacatcatt cccgactggt caatcgtacc      1200
     gccatccttt ctcctccaat cccccctcgt gtccgacaaa tcctatccgg cttggcctcg      1260
     cccgaaggtc cagcccggtg gatttttggc atccgataca tcgagaacga cttgcgcgcg      1320
     acgcaacccc cccggcccta ctctcgcgaa atagtatcct agcttggcct cgtctgaagg      1380
     tccagcccgg tgaattttgg cctgcgacac gcggaaagcg acttacgtgc cccgcggggc      1440
     gcgggactac ccggcatccc catactcgcg aaaccgttcg tctggcttgg cctcgcccca      1500
     aggtccagcc cggtgaattt ttggcctgcg acacgcggaa agcgacttac gtgtcccaat      1560
     cgcggaagtg atcagcggga ccatccggcg tccccatact cgcgaaaact gttcgcctgg      1620
     cttggcctcg ccctaaggtc cagcccgtgg aatttttaac ccaggagcaa ggtacggcgc      1680
     gaccaactcc gacaccaact ctctctctcc cggcgtctat gagaaccttc ggtgtgactc      1740
     cccaaacgac tcattcactc gttgaatgat actctctagt ccggtgtttc ggtgatttac      1800
     aaatttcttg taaaggactc ctggatctga ctgagatctg taccccggcc agagagcatc      1860
     cttaca                                                                 1866
//
ID   Gypsy-3_Deu-I repbase;    DNA;    INV; 4318 BP.
XX
AC   AFPQ01006992;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_Deu_;
KW   Gypsy-3_Deu-LTR; Gypsy-3_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4318
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01006992; Positions   27863   32180.
XX
CC   Positions [3268-3702] - Integrase core
CC   LTRs are 92% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2353..3975
FT                 /product="Gypsy-3_Deu-I_1p"
FT                 /translation="MASWYRKFIPVFSEQADPLQELIRKGRKFDWQPRHQA
FT                 AFDQIKTSLTRAPVLACPDFTRQFVLQTDASDFGIVAVLTQENPEGERVIA
FT                 YASRRLNQAERNYSATEKEYLAIYWSIHKYRMYLEGYRFVVITDHQALRWL
FT                 NSIESPSGRVARWALGLQPFQFEVRYRKGKLNAVADALSRAPPVEVKMART
FT                 GQGWLEEKYKDCQKNPGDEEYRIEGGRLYKQGSKERDLNPWKLCVAGEEVQ
FT                 AVLRENHCQEAAGHLGIFKTLRRVAKQYFWPCMKKDIVTFVKTCETCQQYK
FT                 TSQQHSAGQMLTKIAKTPWETLCVDFVGPLPRTRHGNTILVVIVDKFSKWV
FT                 EVFREKVIARIGAPKILISDNGVHFTGRKTKAAMEHWGIKQQFTAPYTPQQ
FT                 NPTERTNRTVKTMIAELTGGEQTRWDENLPELMLAYNSSTSESTGHSPAQL
FT                 LYGKELRLPGALFDKVTKGSGLVLESIPERWDRLKNTRSEAYRNMEDAAEN
FT                 QKRHYDLRKRVWKPKLGQLVWCRTQFLSSAIDKFNAKLAPKYDGP"
XX
SQ   Sequence 4318 BP; 1424 A; 923 C; 1250 G; 721 T; 0 other;
     actaagacga actgctggta tccggtgaac tgtcccaggc acctcgaagc aggaccgtta        60
     catggcgccc aaacaggttg aagtggttgc aggaagaagg acactaagag agtaatgtcg       120
     agctgggtat accaggctac aaaagcagag ctggtagaat acgcgagtga attcggcgta       180
     gacccaagcg gaggatcaag ggaactaaga caaagactgt caacatacac gaagagcacg       240
     gagcacacag aggagatcag gacaagatta atggaggtat caagcaagta caagaagatg       300
     gaaataccgg gtggaggtgc ccaggtcgag ccggacagca aaaggacggc cacgaaagag       360
     gaagcacaga gcattggaga caggaggaaa gtggaagctc tggacagagt aagaagttgg       420
     ggaatgcggt accagggcac atccaaccca ctggagttcc taggcaagat ggaagaatgg       480
     gccataggat atggcataga caaggatgaa ttggtacaga cgatgccttt tatcttggaa       540
     ggcgccgcag aagagtggtg gaatacgacg ccaagtcggg taaggacatg ggaagaattg       600
     agaggggaac tcctagagta cttcctaccg ccaaggtacc aggagcaact ggatttaaaa       660
     atcggccaac tccgacagaa ggaagaggaa cccactcggg catatgcgat ggaactgaga       720
     aagctgatga gattcaccgg ttactcagaa aaagaaaaac ttgataggat ctacaagaac       780
     tgtcggagca aaataaagct ttatgcacga agatcaggtt ttgcgtcgct aacagagttg       840
     ctaacactag cagaggaggt gggggaaatt gaggcgacgg aaagtcaggg tcaaccggca       900
     gagacaaggg gccacgccga aggccagaga tctgtatgag gtgtggagga acgggacacg       960
     ccacgagggc gtgcggcaac ccgccaaggt tattctgctg ggtgtgcggg aggaacgatc      1020
     ggaggacaac ggagtgttgt agagcccggc cggacgtcaa caggaggctg gagcaggcga      1080
     ctctggcagc gcaggaccga gcacaaggac cggcgggagg aggagggata agctacgatg      1140
     gattccaggc aacggcagag gtaaggatcg gaacaagaag ggcgaaggga atagtggaca      1200
     ccggggcatc aagaagcgtg atcgaccagg gaagttatca aaacctaagg aagcagggta      1260
     ggtggaacga ggcgagggag gaaataagcc tagcgaacgg aacaaggcaa aaggtaatgg      1320
     ggagtttcac cacgctcgtc cagttcggga gcaagcgatt caagctaagt ttcttgatct      1380
     tggaccaggt gacaggagga atgctgctga ggatggactt cttggcaaaa gtaggaacta      1440
     taatacgatg cgaccaccag gaaataacca tcagagagcc tcaggaggaa ccaaaacgga      1500
     aacagcggga ggaagcagga ataaaaacgg agccatccgg ggaggagatc tagacattcc      1560
     tggaggaaca aatgatggtg tttgaaagga tgaagggatg cagtacgatc gcaaagcaca      1620
     caatatacat gaaggacgaa agaccagtga aagaacgcta ttacccgcgc aacccaaaac      1680
     agcaagccat tataaacgaa caggtggatg aactattgga ccagcggctg atagaaccct      1740
     cacgaagctc gtacagcgca ccggtagtct tggtacggaa gaaaaacaac gaatggagaa      1800
     tgtgtgtgga ctacaggtta ctaaacgaga aaacggaaaa agacgcatac ccggtaccaa      1860
     ggatggattt catattgaac caactccggg agaccaagtt cataagaaca atcgacctga      1920
     aggcagggta ttggcaaata cccatggacg aggatagtaa gcagtacacg gcatttacgg      1980
     taccaggacg agggctgttc caatggaagg taatgccatt tggtctcacc acggcaccgg      2040
     caacgttcca acgagccttg gataccatca tagggccaga aatggagccg ttcgcattgg      2100
     catatctgga tgacatcgtg gtaattggaa ggaataggcg ggagcacctg gagaagctac      2160
     aggaggtgtt taggaggctc caagaagaac ctaaaaatca acgcaggaaa atgccatttc      2220
     tttcaaaaat atctaaggta tctgggacat atcgtgaccg atcaaggaat acagacagac      2280
     ccggataagg tggcagtcat aagggaacta ccaacgccag gcacaaccaa ggaagtccac      2340
     agctttttgg aaatggcgtc atggtacagg aaatttatac cggtgttctc ggaacaggcg      2400
     gacccgctcc aagagctaat acggaaaggg agaaagttcg actggcaacc tcgacatcag      2460
     gcagcatttg atcaaataaa aaccagctta acacgggcac cggtgttggc gtgccccgat      2520
     ttcactaggc agttcgtatt gcaaacggat gccagtgact tcgggatagt ggcagtgcta      2580
     acgcaggaga acccagaggg ggaacgagtg atagcatatg cgagcaggag gttgaaccaa      2640
     gcggagcgga attacagtgc cacggaaaaa gaatatctcg ctatatattg gagcatccac      2700
     aaatacagga tgtacttgga aggttacagg ttcgtagtaa taaccgacca tcaggccctc      2760
     agatggctga attcaatcga aagtccttca ggcagagtgg caaggtgggc attaggctta      2820
     caaccgtttc aatttgaggt aagataccgc aaggggaaac taaacgccgt ggcagacgca      2880
     ttatcacgcg caccaccagt cgaggtaaaa atggcaagaa caggacaggg ttggctagaa      2940
     gagaaataca aggattgcca gaagaacccc ggagacgagg aatataggat cgagggcggc      3000
     agattgtaca agcagggctc caaggagaga gaccttaacc cctggaagct gtgcgtcgcg      3060
     ggagaagagg tacaggcggt actacgagag aaccactgcc aggaggcggc aggccaccta      3120
     gggatattca aaacactcag aagggtcgca aagcagtatt tctggccgtg tatgaagaag      3180
     gacatcgtga cctttgtgaa gacatgcgaa acctgtcagc agtacaagac gtcgcaacaa      3240
     cactcagcgg gacagatgct gacaaagatc gccaagaccc catgggaaac cctatgtgtg      3300
     gattttgtgg gcccactacc aaggacacga cacgggaata ctattttggt agtgatcgtg      3360
     gataaatttt cgaagtgggt agaagtattc cgggaaaagg tcatagcgag gattggagcc      3420
     cctaagatcc tgatatctga taacggagtg cacttcaccg gcaggaagac caaggcggcc      3480
     atggaacact ggggaataaa acagcaattc accgcaccgt acacaccgca gcaaaacccg      3540
     accgagcgca cgaaccgcac agtgaaaacc atgatagcgg aattgacagg aggggaacaa      3600
     accagatggg acgaaaacct accggagtta atgctcgcgt ataacagcag cacctcggag      3660
     tcaacggggc atagcccggc acaattactc tatggaaaag agctgcggtt gcccggagca      3720
     ctgttcgaca aagttacgaa aggctccggt ctggtattag aatcgattcc cgaaagatgg      3780
     gaccgactga agaataccag gtcggaagct tacaggaata tggaagacgc cgcggaaaac      3840
     cagaaacgac actatgacct acggaaaagg gtatggaagc ccaaattagg gcaattagtg      3900
     tggtgcagaa cacagttcct atctagtgcg atagacaagt ttaacgcgaa gttagcgcca      3960
     aaatacgacg ggccatgata ggtacagggt tttccatcac cggtaatagc tgaattaagg      4020
     aagcaggggc gcacaagtaa aaaacgggca tacgtggcgg atttaaaaga gtatcaaagt      4080
     aacactaacc cgatcaaagc aaatcccaat aaccttagta accaaactac cgctctcatc      4140
     gttacaggaa acatggaaaa gagtatcaaa gtaacactaa cccgatcaaa gcaaatccca      4200
     ataaccttag taaccaaact accgctctca tcgttacagg aaacatggac caattcgaaa      4260
     attcaaatgc attatccggc cccacacgcc agccgcacat aaaaacgggg aggtagta        4318
//
ID   Gypsy-3_Deu-LTR repbase;    DNA;    INV; 1090 BP.
XX
AC   AFPQ01006992;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_Deu_;
KW   Gypsy-3_Deu-I; Gypsy-3_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1090
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01006992; Positions   26773   27862.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1090 BP; 255 A; 334 C; 252 G; 249 T; 0 other;
     tgacgcccgg ggcgcataag aaggagaata tataagaaat aggaatagcc agaaagtcaa        60
     gtcatgaagt atttaggata atttgttcat agttttaagg agaaatgaca ctgaagtatt       120
     cgcttgttga tttattaaat aaataagatt tgaatttgaa tgcgcgggcg cgccttagtg       180
     aaccacgatc ggtcacaccg ccgggccgaa cggtcacact acataaaggg attttcggga       240
     acgggcacac tggcggcaac cacggggtat ataagaagga ccggtttctg ggaagagtca       300
     cttgttgcgg tggatctcat ccaggtaaga tcagccctct cccgcagttg ggcaacctca       360
     ccagcactag tcatttttgg ttgaatttag ccaagggcta aattccaata catccgacct       420
     cggttatacc gagggagcac tgccatcggc cactcgccga tgcttgccgc agcagatcca       480
     ccggatcact gccaagcact ttcgcaacag ccttaccagg ctttgcattt cgtacgcgtc       540
     ggacctcaag ggcctcgcgt catctctcgt aagagtccca cagggacttt gcatctatta       600
     cgcgtcggac cccaagggcc tcacgtcttc tcccgcagga gtcccacagg gactttgcag       660
     ttcttacgcg tcggacccca agggcctcgc gtcatctcta gcaacagccc caccggggct       720
     gtgcatcgct cacacgtcgg acccaaaggg cctcgtgtca tctctcaccc gagacccact       780
     gggtttctag tcattcttta tcataccgac tccatagact attcctcatt acattcacac       840
     tcgctcgcgt aaccggccct cgggccgtca cccattccct cgtttccatt tgtctcttct       900
     ttctttagct agcggatcgc cgagacggtc tgaccctgtc cccacacggc ctccccccca       960
     tcaccctgcg gagcatcgga cacccggcta ccctccttcg gaagctctcc ctcccggtcc      1020
     cgcagaccgc ccggcgacga ccagccgaac cttgtgaatt aactctgtaa ccctagaaat      1080
     gaaataaaca                                                             1090
//
ID   Gypsy-3_DFi-I repbase;    DNA;    INV; 4203 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DFi_;
KW   Gypsy-3_DFi-LTR; Gypsy-3_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4203
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 893-893 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1737-2195] - Reverse transcriptase
CC   Positions [3306-3761] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1221..4196
FT                 /product="Gypsy-3_DFi-I_1p"
FT                 /translation="MKESSYRYIWPNGNPDLVKCHLKLSDYQRNPIPVKGI
FT                 TDTSIRYNNRRISNLPLIVTSGTGSNLLGCNWFEPLGIRIEGIHGVQCGIG
FT                 IAEILRKFDHLFSSELGRYTGPPVELKVDQDVPPVRLPPRRIPYALIKPYE
FT                 EELDRLCSQGILEPVEYSEWATPTVPIVKKDGSIRICGDYKSTLNRAVQPH
FT                 CHQIPAINTLLASIEGGSIFAKIDLAQAYQQLVVDENTALMQTITTHKGAF
FT                 KVTRLQFGISSAPGIFQSCIERILQNISGVLPYFDDIVIMGKSEEELASRL
FT                 NEVLTRMDQAGLRLRKEKCQFGVSSIEFLGFKVDALGIRPSADKVKAIHEA
FT                 PPPKEKKQLQAFLGLTNFYHSFLPKKATIAEPLHRLLDKNVPWTWRPVHQK
FT                 AFAELKSLIASDAVLIHYSPDRPLILTCDASPYGLGAVLSHEMEDGTEKPI
FT                 AFYSRTLSKAERNYAQIDREAVALVAGVKKFHNYLYGRKFTLITDHRPLLG
FT                 IFSTEKPIPQIISNTMMRRAIFLRAYKFNLIHQPGTKISNADFLSRCPTAE
FT                 VHPEPQSEEVLMIEWATDPTVTANTLATNTSKDCSLRKVLNWVLRGWSSVK
FT                 VQRHDDLYPFFVRRNELTSNQGILFWGNRAVIPFMDRQEILSALHAHHPGI
FT                 VRMKALARSYVWWPGLDADIEKAVSQCLACQHTRNSPPRSDVHHWESAKKP
FT                 WSRLHIDFAGPFQGNTFFLVVDSFTKWLEVCPVKSTSASAAITFLRQLFAT
FT                 HGIPDEIVSDNGTAFTSEEFKLFTKNNRIRHIRSAPFHPATNGQAERMVQT
FT                 TKSYLKKLDRHTDINIALARFLFDQHTTPHSVTKHSPAELLFNRELQTFFD
FT                 KLSPGEISYGKVCEAQTQKSFVTGTPVWVRNYASGPEWIEGHVSKRTGPIS
FT                 YSVCLEDDRTVRRHLDQLRLRSPSQQPTSEEISSPTGRVPLTQTEAAAGEP
FT                 TTPVGPQRSPELIETGGPPRRSARDRRRPQFYDPSGC"
XX
SQ   Sequence 4203 BP; 1140 A; 1053 C; 1045 G; 964 T; 1 other;
     taaaattggc gacgaggatg ggatatttaa ttcctgtgcg taagcttatt aaattttcgc        60
     aatagaagtg caggagagag agagagagag tgaaacggaa ttactgatca mgagagttta       120
     ccgtacgtcc agaatacggt aatttttact ttgaagcaaa cacatggata agcgccgaac       180
     tgtcgatcaa gctgcaaaaa gcgccgacga agaggtaaaa caagagataa gcgataatcc       240
     attaactcca cgagggagtc tttctgagag cggctgtaca gtcgagccga atacggcgcc       300
     tatatctgat acgcaaaaag cggttatcca aactggcgga gtcgcaatgg caggagttgg       360
     aactctggaa ccttttgact tgctagcacc tgggaaatgg aacgcctacc gggaacgttt       420
     cgagctgtac ctgttagcaa atagcgttgt ggacgaggac cggaagaagg cagcgtttct       480
     cactctagcg ggcgcaccca tttatgagct gctagtgtcg ttagcatcac ccaggcaagt       540
     tagtgaattg caattgtcag acgtgtatga aatattaacc agccacttgg cgccccgcca       600
     atcggagatt gctgcattct accattttca caagcgtgat cagcaccccg acgagtccgt       660
     cggtaactac atggccgcat taaggagttt agcggtaggg tgcaatttcg gacaaatgtt       720
     agatcgtatg ttgcgggacc gtttgtgtgc ggcatgcgcg atgaaggtct ccagcgaagc       780
     ctgctagccg acgccgaatt gacggtgcat cgggccatgg aacgagccgt ttctagtgaa       840
     gcagctgccg cgagcgcgct gtcgattcga ggcgacattg cccgacgccc cgtgtcctcg       900
     agcaccgagt ccatccacgg aataggttcc agttgcgctg gctgtggggg tcggcacatg       960
     cgtaagaagt gtccgtttcg caacgccacc tgccattcct gtggccgaac tggccacatc      1020
     cgccgagtat gccgcagtaa tagtcaagct gggtcaacca aatcgtcatc gccgacgccc      1080
     agtaagacgg gtcgcaacag ggcatcacac ggacgcgttc atcaaatagt tccagtggtc      1140
     agccccaaga agtcggtggc cgtgcttatc aacggtcgct catgccagtt cgaagttgat      1200
     tccggtcacc cgtcaccatc atgaaggaat cgtcgtatcg gtacatctgg ccaaacggta      1260
     atcccgatct cgttaagtgc cacctaaagc ttagcgacta tcagcggaac cccattccgg      1320
     tcaagggaat cacagacacg tcaatccgct acaacaatcg ccgtatcagt aacctgccac      1380
     tgatcgtcac gtctggcacc gggtcaaacc tcttaggatg caactggttt gaacccctcg      1440
     gaatccggat agaaggcatt catggcgtgc agtgcggtat cggtatcgcg gaaattctaa      1500
     ggaaattcga ccatttgttt tcatcagaac ttggtcgata tacggggccg ccagtggaac      1560
     taaaggttga ccaggatgtt ccgccggtca gactgcctcc tcgtcgaatt ccttacgcac      1620
     tcatcaagcc atatgaagaa gagttagacc gtctctgttc tcaaggaata ttggagcctg      1680
     tagagtactc tgagtgggcc actccgacgg tccccatagt caagaaggat ggttccattc      1740
     gcatatgtgg agattataaa tcgacgctta atagagcggt gcagccgcat tgccatcaaa      1800
     ttcctgcaat caacacgctc ttggcatcga tagaaggagg ctcaattttc gcaaaaatag      1860
     atttggcgca ggcgtatcag cagttggtgg ttgacgaaaa tacagcactg atgcaaacaa      1920
     taactactca caaaggagca tttaaggtaa cgagactaca attcggaatc tcatcagccc      1980
     caggaatatt ccaaagctgc attgaaagaa tactacagaa catatcgggc gtccttccat      2040
     attttgacga tattgtaata atgggtaaat cagaagaaga acttgcgagt aggttaaacg      2100
     aagttctaac ccgtatggac caggccggat tacgcctgcg taaagaaaaa tgtcagtttg      2160
     gagtctcctc cattgagttt cttggattca aagttgatgc tctcggcatt aggccatcag      2220
     ctgataaagt taaagccatc catgaggcgc cacccccaaa agagaaaaaa cagttacaag      2280
     cgtttctggg actgaccaat ttttatcatt cattcttgcc caagaaggcc accattgcgg      2340
     agccattaca tagactgcta gacaagaacg taccgtggac atggcgtcca gtgcaccaaa      2400
     aagcattcgc agaacttaag agcttgattg catcggatgc ggtcctaata cactactctc      2460
     cagaccgccc actgatctta acatgcgatg cgtcgccgta cgggttagga gcagtactta      2520
     gccacgaaat ggaagacggg acagaaaagc caattgcgtt ttactcacgc acgctgtcta      2580
     aagcagagag aaactacgcg cagatcgaca gagaagctgt agcgttagtt gctggagtta      2640
     aaaaatttca taactattta tacggaagga agttcacgct tattacagac caccgcccac      2700
     tgctgggaat cttttcaaca gaaaagccaa ttcctcaaat catttctaac acaatgatgc      2760
     gtcgagcaat ttttttgaga gcgtataaat tcaatttgat tcaccagcct ggaaccaaaa      2820
     ttagtaatgc ggatttccta agtcgctgcc caacggcaga agtacacccc gagccacaat      2880
     cagaagaagt tttaatgatt gaatgggcaa ctgatcccac tgtcaccgca aacactttag      2940
     caaccaacac gtctaaggat tgcagcctca ggaaggtact caactgggtg ttaaggggat      3000
     ggagtagtgt caaagttcag cgtcatgatg acctgtaccc cttcttcgtt cggcgaaatg      3060
     aacttaccag taaccaagga atattgtttt ggggtaatcg cgcagttatt ccttttatgg      3120
     acaggcagga aattctctct gcgttacacg cgcaccaccc gggaatcgtt agaatgaagg      3180
     ctttagcccg cagttacgtc tggtggcccg gtttggatgc ggatatcgaa aaggcggtaa      3240
     gtcaatgctt agcgtgccag catacgcgca attccccgcc aagatcggac gtacatcact      3300
     gggagtctgc caagaaacca tggtcccgcc tacacattga tttcgccgga cctttccaag      3360
     ggaatacgtt tttcttagtc gtcgattcct ttacgaagtg gcttgaagtt tgccccgtaa      3420
     aatcgacatc cgcgtccgca gcaatcacct tccttcggca gctgttcgct actcatggta      3480
     ttccagatga aatcgtgtcg gacaacggaa ctgcgttcac ctccgaggag tttaagttgt      3540
     ttacgaaaaa caatcggatc cgtcacatcc gatcagcgcc tttccaccct gcaaccaacg      3600
     gccaggccga acgaatggtt caaaccacga agagttactt gaagaaacta gatcgtcaca      3660
     cggatatcaa catagcttta gctcgtttct tgtttgatca acatactacg ccgcattccg      3720
     tcacaaagca ttcgccagcg gagttgcttt tcaataggga gctccagaca ttctttgata      3780
     aattaagtcc aggcgaaata tcatacggta aggtctgcga ggcccaaact caaaagtctt      3840
     ttgttacagg cactcccgtt tgggtccgaa actatgcaag cggccccgag tggattgagg      3900
     gccacgtctc aaagcgaacg ggaccgattt cctattcggt gtgtctggag gacgaccgaa      3960
     cagtcaggcg gcatctggat cagctgcggt tgcgcagtcc gtcgcagcag ccaacatcag      4020
     aagagatatc atctccaact ggtcgtgtcc ctctaaccca aactgaagcg gcagctggcg      4080
     agccgacaac tccagtggga ccacagcgct cgcccgagct aatcgaaact gggggaccgc      4140
     cgcgcaggtc agcccgtgac cgtcgccgcc cgcagttcta cgatccatct gggtgttaag      4200
     ggg                                                                    4203
//
ID   Gypsy-3_DFi-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DFi_;
KW   Gypsy-3_DFi-I; Gypsy-3_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-207
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 894-894 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 207 BP; 54 A; 51 C; 36 G; 66 T; 0 other;
     tgttatgtat gcgactgcat tatctcgcga agtgatctcg ccatttgaag tcagtcttca        60
     ctaagtcgcg agccgatgca gatcgagctg cagcctcggc aaatcatcag tttccagcac       120
     tcatagacat tctctgcaca actttccctg ttgctatact ctattattgt atcacttaaa       180
     taaatttaat atatgcttgc gcataca                                           207
//
ID   Gypsy-3_DGri-I repbase;    DNA;    INV; 5718 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DGri_;
KW   Gypsy-3_DGri-LTR; Gypsy-3_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5718
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1295-1295 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1795-2331] - Reverse transcriptase
CC   Positions [3554-4027] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..1138
FT                 /product="Gypsy-3_DGri-I_2p"
FT                 /translation="MLEAQLNQALGQIRQVPIFNGETDELGAFIGRIDFIM
FT                 ELFPSVDARQKLIMYSAIQMQLEGDAMRTSLRHLPGDWGALRSVLISTFKT
FT                 QTPCEELLRRVYNTYFGGSIRKFLEELEQKSFVILNKLVIENNAENKTLYS
FT                 NALKNTVRDVIHKRLPDRLYMQLARYDISTTDKLKAVAQELGLYEDRIPEK
FT                 PKSANNTHYNKNNNKYYPKTQSNYNPNYNQSFRNQQNYNTNYRNQNSQNEP
FT                 MVNKQLYNEYQQKLNQGRMQNPINYQSDCNNTRPPNQPTKRQRPSNSGQSK
FT                 MEWAENFHQTASETNTEPHS"
FT   CDS           1940..4237
FT                 /product="Gypsy-3_DGri-I_3p"
FT                 /translation="MDEILDKLGKCQYFTTIDLAKGFHQIQMDEKSIAKTA
FT                 FSTKAGHFEYTRMPFGLKNAPATFQRCMNNLLGDLIYKNCLVYMDDIIVYS
FT                 TSLEEHILALKKVFRKLREANLKLQLDKCEFMKRETEFLGHIITTEGIKPN
FT                 PIKIKAVKEFPIPKTPKEIKRFLGLCGFYRKFIPNFAKVVKPMTIKLKKGA
FT                 KVNEKEITYIEAFEKLKLLIISDPILVYPDFKKKFSLTTDASNYALGAVLS
FT                 QDHKPICYASRTLNEHEIKYSAIEKELLAIIWATKNFRSYLFGRNFEILSD
FT                 HKPLIWLNNIKEPNMKLQRWKIRLNEFDYEIKYIPGKENYVADALSRIKTE
FT                 ENNVEENFMGNAQDSIAATIHSANEDNQNCIQTTERPLNNYNHQIEFIKGN
FT                 TEEIKKISYFHKTKIIINYIEMTTEKAKEIIKEYLCAKNSVIYFPHEGDYA
FT                 IFQKAYLEIIQRDCPIKTMRTTKKLKDIQTYSELKQTILNDHTKLLHPGIE
FT                 KTTVMFKEKYYFPDYQKLIQNIINECEICNISKVEHRDTKFSYEITPEVFN
FT                 PREKYVIDFYMINNKQFLSCIDVYSKYATLIEINGKDWLEAKRALLKIFNE
FT                 MGKPLEIKADKDSAFMSAALKIWLDSENVKIKITTSKNGISDVERFHKTVN
FT                 EKLRIINSDTNEENKLTKFEIILYTYNHKTIHSTTGRTPADIFIYAGSPAY
FT                 NTQLNKIKKINKLNEKRKTYEIDTNYREMPLIKSKTTNPFRKTGIIKQLDS
FT                 KHFEETNRGRKIIHL"
FT   CDS           4744..5685
FT                 /product="Gypsy-3_DGri-I_1p"
FT                 /translation="MDGMTEMSQQNTKLSLLLFNLQQFTEYIEDIEMGMQL
FT                 TRLGIFNPKLLKHDHLLNVDSEKLLNIKTSTWIEPKTNEIIIISHIPKTLS
FT                 QETLYSIIPYPDEEKNILTETIRDKYYLHKNKTYSATEKKLITNKCINGIL
FT                 KQTEVECKYTKTRKNYEINFIEPNVILTWNLPKVTLNQNCIPQKIEILGNN
FT                 IIKATNCSVQLEDIQISNVISDFTQTVYISNNITKTEPLAFIQTKELIREH
FT                 TRTNNTLLIISLTSVTILSIVIISYSLFKYKNLPKQTIIEYKNSAATTPPV
FT                 ENEDKATVESANDLRMYPTLNA"
XX
SQ   Sequence 5718 BP; 2517 A; 971 C; 859 G; 1367 T; 4 other;
     attggcgcag ccggtaggat aacagttaat tttttcgtga aacgtcgtgg tcctttcgac        60
     aggaaaacgt actagtgttc cgcgataaaa actgttatcc gcataaggac cccgtgatcc       120
     ttaaaaaact tttttctaaa aagtaaacaa aacgcgagac agacgacaaa gaattttttt       180
     caaacaagct ttcaaaactc tgatgttgga ggcacaatta aaccaagcac tcgggcaaat       240
     ccgccaagtg ccaatcttca atggagaaac ggacgagcta ggagccttta ttggaaggat       300
     cgattttatt atggaactct tcccaagcgt ggacgcaaga caaaaactga ttatgtacag       360
     cgcgatccaa atgcagttag agggagatgc aatgaggaca tcgctgaggc acctaccagg       420
     agattgggga gcactacgaa gcgtactgat ctccactttc aagacccaaa caccttgtga       480
     ggagctactg agaagagttt acaacacata ttttggtgga agtatccgta agttcctcga       540
     agaactcgag caaaaatcct ttgtaatatt aaataagtta gtaatagaaa ataatgcaga       600
     aaataaaaca ttgtactcaa atgcattaaa aaatacggtt agagatgtwa tacataaaag       660
     actaccagac aggctataca tgcagttagc cagatatgat atatcaacaa ccgataaatt       720
     aaaagcagta gcccaagaat taggtttata cgaagaccgc ataccagaaa aaccaaaatc       780
     tgcaaataac acccattaca ataaaaataa taacaaatat tatccaaaaa ctcaatcaaa       840
     ttacaaccca aattataatc agagtttcag gaatcaacaa aattataata caaattatag       900
     aaatcaaaat tcacaaaacg aaccaatggt caataaacaa ttgtataacg aatatcaaca       960
     aaaattaaat caaggcagaa tgcaaaaccc aattaattat caatcagatt gtaacaatac      1020
     cagaccacct aaccaaccca ctaaaagaca aagacctagt aatagtggac aatcaaaaat      1080
     ggaatgggca gaaaattttc atcaaacagc ctcggaaaca aacacagaac cccattcata      1140
     agaataatta tgaataacca acaaatgcga tgcttaatag atacagggtc atcagtaaat      1200
     atgatgaata aaaatttctt taattaccca acttttaaag agaatattac ttgtcaaacc      1260
     ataagtggag aaataaaatt aaataccagc atatcattag cccctagcaa actgtgtcca      1320
     acagatcaga agttttacat acataatttt tccaaaaatt ttgacatcct cttaggccga      1380
     acgttcctta aggattgtag aagcgtgatc aattacgaag acgaatttgt taaacttaat      1440
     aattttcaat tttcatttaa atataataac gaaaataagg aagaagaata taaagaccca      1500
     ctactaataa aagatataca tacagcatac gcattggaaa acgaattagt ggaaagcaat      1560
     cagtttagat tagaacacct aaatacagaa gaaaaagcca cgttaacaaa cattttgttt      1620
     gaatttagcg atattcagta taaagagagt gacaatttga ctttcacaaa tactgtaaaa      1680
     cacgttatca atacaaaaaa tgaggacccc tgttataaga aaccatataa atatccacaa      1740
     acctttgatg acgaagttaa caagcaaatg aaagaaatga tgcaacaagg tattatacga      1800
     ccatctaatt caccttattg ttctcctatt tggatagtac caaaaaaaga agatgcatca      1860
     ggaaagagaa aatatagaat agtcgtagac tatcgcaccc taacgaaaaa acagtagcga      1920
     taaatttccc atacctgtaa tggatgaaat attagacaag ttaggaaaat gtcaatattt      1980
     cacaacaatc gatttggcta aaggatttca tcaaattcag atggacgaaa aatcaatagc      2040
     aaaaacagca ttctcaacca aagcaggaca tttcgaatat acgcgaatgc catttggctt      2100
     gaaaaatgca ccagcaacct ttcaacgttg tatgaacaat cttttagggg acttaattta      2160
     caaaaattgt ctagtttaca tggatgacat aatagtgtat tccacttcat tggaagaaca      2220
     catattagca ttaaagaaag tttttagaaa gctcagagaa gcaaatctaa aactacaact      2280
     agataagtgc gaattcatga aaagagaaac tgaatttcta ggacatataa taacaacgga      2340
     aggaataaaa cctaacccaa tcaaaataaa agccgttaaa gaatttccaa tccctaagac      2400
     tccaaaagaa atcaaaagat tcctaggatt atgtggattt tacaggaaat tcataccaaa      2460
     tttcgcaaaa gttgtgaaac caatgacaat aaagctaaag aaaggagcaa aagtcaacga      2520
     aaaagaaata acatacatag aagcctttga gaaattaaag ttactcataa tatcagaccc      2580
     aatattggta tatccggatt tcaagaaaaa attctcactt actacagacg ctagtaatta      2640
     tgcgttagga gcagttttat cacaggatca caaaccaata tgttatgcta gtagaacttt      2700
     aaacgagcat gagataaaat actcagcgat agaaaaagaa ttattagcaa taatatgggc      2760
     aacgaaaaat ttcagatcat acttatttgg cagaaatttt gaaatactta gcgatcacaa      2820
     acctcttata tggctaaata acataaaaga gccaaacatg aagttacaaa ggtggaagat      2880
     aagactaaac gaattcgatt atgaaatcaa atacatacca ggcaaagaaa actacgtagc      2940
     tgatgcactt tcaagaatta aaacagaaga aaataacgta gaagaaaatt tcatggggaa      3000
     tgctcaagat agcatagcag cgacaataca tagcgcaaac gaagataatc aaaattgtat      3060
     tcaaaccaca gaaagaccat taaataatta taatcatcaa atagaattta taaaaggaaa      3120
     taccgaagaa ataaagaaaa ttagctattt tcacaaaact aagattataa taaattacat      3180
     agaaatgacc acggaaaaag caaaagagat cataaaagaa tatctttgtg caaaaaacag      3240
     cgttatatac ttcccacacg aaggtgacta cgcaatattc caaaaagctt atttagaaat      3300
     aatacaaaga gattgtccga taaaaactat gagaaccaca aaaaaattaa aagatatcca      3360
     aacttattca gaattgaaac aaaccatatt aaacgaccat acaaaacttt tacacccagg      3420
     aatagaaaaa actacggtaa tgtttaaaga aaaatattat ttcccagatt accaaaaact      3480
     aatacaaaac ataattaacg aatgcgaaat ctgtaatata tcaaaagtgg agcacaggga      3540
     cacaaaattt agttatgaaa taacacctga ggttttcaac cctagagaaa aatacgttat      3600
     agatttttat atgatcaata ataagcaatt tttatcatgc atagacgtat actcaaaata      3660
     cgctacgtta atagaaataa atggtaaaga ttggttagaa gcaaaacgag cattattaaa      3720
     aatattcaac gaaatgggaa aaccattaga aataaaagca gacaaagact cagcattcat      3780
     gagtgcagca ttaaaaattt ggttagattc agaaaacgta aaaattaaaa tcacaacaag      3840
     taagaacggc atatcagacg tagagcggtt tcacaaaaca gtcaacgaaa aattaagaat      3900
     aattaattca gacacaaacg aagaaaataa gttaacaaaa ttcgaaataa tactttacac      3960
     ttataaccat aaaacgatac atagcactac tggtagaaca ccagcagaca tcttcattta      4020
     tgccggatca ccagcataca atacccaatt gaataaaatt aaaaagatca acaagctaaa      4080
     cgagaaaaga aaaacttacg aaatagatac aaactataga gaaatgccac ttatcaaatc      4140
     aaaaacgaca aatccattca ggaagacagg cataataaaa cagttagata gcaaacattt      4200
     cgaagaaacg aatagaggaa gaaaaatcat acatttataa caataatttc aggtcaacta      4260
     cggaagattc atctaccggt ccacctgcta ataatgataa tactaacgct aacaataact      4320
     cagagtaata cccaaaatat agaaataaac caagtaaamg cacaaaacgg gtacgtttta      4380
     tttaaaacag gctcattgag cataccttca gatttcgaat accattgcct aacagtaaac      4440
     ctaacaaaaa ccgaaaatac tgaaaaagat ttaatatctc agacacatga ttttagtgct      4500
     ctaccccaag tagaatatct agtagaaaaa cttcatagag aaatgaacgg aataagaata      4560
     atcaaaagac agaaacgagg actcctaaat ttagtaggaa aaggttacaa atacttattt      4620
     ggcacattaa ctgaagacga caaaacagaa cttactgaaa aaattkacga cttagaggct      4680
     aatagcatac aggtaaacga actaaacaaa gtcatagaag cagtcaatca tgggatagaa      4740
     ataatggacg gcatgacaga aatgtcacaa cagaacacaa aattaagctt attactgttt      4800
     aacttacaac aattcactga atacatcgaa gatatcgaga tggggatgca actgaccaga      4860
     ttgggaattt ttaacccaaa attgctaaaa catgatcatt tattaaatgt cgattcagaa      4920
     aaattgttaa atataaaaac atcaacttgg atagaaccca agacaaatga aattataata      4980
     atatcacata taccgaaaac tctgtcacaa gaaacattat attcaataat accatatcca      5040
     gacgaggaaa agaatatttt aaccgaaact attagagata aatattattt acacaagaat      5100
     aaaacttatt cagcaacaga aaagaaacta ataacaaaca aatgtatwaa cggtatcttg      5160
     aaacaaacgg aagttgaatg taaatacaca aaaacaagaa aaaactatga aataaatttc      5220
     atagaaccga atgtaatatt aacttggaac ttacctaaag ttacacttaa tcaaaactgt      5280
     ataccacaaa agattgaaat tttaggaaac aacattatca aagcaaccaa ttgttctgtc      5340
     caattagaag atatccagat atcaaatgta atatcagatt ttacacaaac cgtttatatc      5400
     agtaataata taactaaaac agagccgtta gcattcatac aaactaaaga actcataaga      5460
     gaacatacaa gaacaaacaa tactttatta atcataagct taacatcagt aacaatattg      5520
     tcaatagtaa taataagcta ttctttattc aaatacaaaa atttaccaaa acaaacgata      5580
     atagaatata agaatagtgc agcaacgaca ccacccgtcg aaaatgaaga caaagcaacc      5640
     gtggaaagcg ccaacgactt aaggatgtac cctacactga acgcttgagg acaagccaat      5700
     ttctaatgga tggggaag                                                    5718
//
ID   Gypsy-3_DGri-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-MAR-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DGri_;
KW   Gypsy-3_DGri-I; Gypsy-3_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-300
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1296-1296 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 300 BP; 96 A; 66 C; 57 G; 80 T; 1 other;
     tgacatattc agatcacatg gatctctcat gtatgcaccc gtasccagct gcaagcaaaa        60
     tagctgacgc tgcgaataat aatagttcag ttgccaaccg aaaaacgcgc aactgagtga       120
     agaagttacg atcacgctgc atttgtcgac tcagcagttc ccacgctgga cgacgagaag       180
     aatatccaca tgaagcagcg cattcagtaa ttaagtcagt cacattttgt actcaaaagt       240
     aagaagtcgt gttttcgaat aaaattatat tttttattct aaaccgttgt ccgactttca       300
//
ID   Gypsy-3_DHyd-I repbase;    DNA;    INV; 6189 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6189
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2408-2408 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           285..1649
FT                 /product="Gypsy-3_DHyd-I_1p"
FT                 /translation="MSWTYRNIKVEIDSDEEYSLGFAPRTSNRTEMDPETV
FT                 KAFIDNAISSALAREQQIRNEMHAEIQALRDQVSSLRVETPQVQVYESVTI
FT                 DPNIRCEVRLDVAKSVPNFSGDHEEYVSWRQAAVEAYQIFKRYDGSETHYQ
FT                 AVAILKNKVCGAARSVLTSHNTVLNFNAIIARLDCTYADKTSLRVLRQRLE
FT                 LVRQGDLDIMQYYDEVEKKLTLVTNKIVMTHNEQAAAILNAEIRNDALHAF
FT                 MAGLRRPLKALVIPAQPKDLPSALALAREAENSIERSMFAATYAKAIEDRN
FT                 HSREPNKQGNNSIPKQGKYFEKNPHFKQNQNKTQQSEPGPSSSNRPNNSNQ
FT                 GQSQAQPMDIDPSTSKFRQPTNWGKPQSNPTYGEAQKRQNTSERVSGQRRQ
FT                 RINNVTQQNSNQEDQDYTSAAEAAVAEASDESDSLGDNDLLNFLGNAPNCR
FT                 SSSDNWLAKH"
FT   CDS           1583..4684
FT                 /product="Gypsy-3_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="PIEFFRERSKLPFVERQLAGKTLKILIDTGAAKNYVK
FT                 PVKELKNITPVDTPFTVNSIHGSSKIKEKCSMKIFGKSAPFFILDTLDTFD
FT                 AIIGFDLLTQAGVNLNLNNNNITYGNTTEVLQHHLCDNVHFTRIDDIVVPD
FT                 NVRDKFKNVILKRIGTFSTSNEALPFNTSVVATIRTIDDKEVYSKLYPYPA
FT                 SVADFVNNEIAQLLKNGIIKPSRSAYNSPAWVVDKKGTDANGNKNKRLVID
FT                 FRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLNERDRE
FT                 KTAFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREQIGKICYVYVDDVI
FT                 IFSENETDHVKHIDTVLQQLYDANMRVSKEKTKFFKESVEYLGFIVSSNGA
FT                 KTDPEKVKAIQEFAEPKNLFALRSFLGLASYYRVFIKDFASIARPLTNMLK
FT                 GENGMVSKHMSKKVPIDFDNAQRDAFDRLRNILASEDVILMYPDFKKPFDL
FT                 TTDASANGIGAVLSQGGRPITMISRTLKQSESHYATNERELLAIVWALGKL
FT                 QNYLYGTRELHIFTDHQPLTFSVSEKNTNAKIKRWKAYIEEHNAQIHYKPG
FT                 KENFVADALSRQNVNALQDETQSCAATIHSEISLTYTIDTTDKPVNLFRNQ
FT                 IILEEARYNLYRRLIIFGRKTRHVIQFTDKNDLLESIKLAVNSDVVNAFYC
FT                 DLPTLAVFQHELVSLYPTTKFWHCKNIVADITSKSDQIEIVNNEHNRAHRA
FT                 AQENMKQILREYYFPKMAKLTKEIVSNCKVCTTAKYDRHPKKQELGETPIP
FT                 SYTGEMLHIDIFSTDQKLFLTCVDKFSKFAIVQPLLSRSIIDIINPMLQLI
FT                 NIFPRIKTIYCDNEASFNSETVTSLLKNQFNIDIVNTPPLHSCSNGQVERF
FT                 HSTLLEIARCIKIDKKLNNTTQIIIRATIEYNRTIHSVTEQRPLDVIHSQN
FT                 IELQHNIKDRIIKAQQDQLIRCNXNRQNRVFDVGEKVFVKNNKRLGNKLTP
FT                 LCSEGHIQADLGTAVLIKGRVVHKDNLK"
FT   CDS           4688..6187
FT                 /product="Gypsy-3_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="TTTFFWFHTVNITSLHISYRLTIIILSILTATGARIT
FT                 DFSNAKYIPVLDGSVLLWEQSKFIRHSTNLTEFSAIIDDTIKLSELFPLSH
FT                 MRKLLEVDIEHVQNLLSTLTIHHRIARSLDFLGTALKVIAGTPDASDLEKI
FT                 RNSETQLIESNNRQIVINTETQKQINLLTETVNRIIKAKKSEMVDTPHLYE
FT                 TLLARNRMLITEIQNLMLTITLAKSDIINPTIFDHKDLKSIFTEQLTEVSI
FT                 VSLMAVSKIKIFQSDSTLHIIIEYPNIRFVCKKIIIFPVAHQNTVLQLHDN
FT                 IVAECKDGVKAATDCVTTNHATFCKLAAHDTCARGLHSGESAICRTQPSHL
FT                 EPITRVDEGMIIINQPASVSIDGGPTIYVRGTNLITFERNAMVNDTTYLNH
FT                 DKTVDMVPGIPTSPLLNITGHDHVLSLPLLQRMNEHNLNAIRELSDDMSSN
FT                 GSPKFWFAIGVIISLLFCSLIVVGLCWYRKNTSIKLQRFIQELRITEDGNE
FT                 LKGG"
XX
SQ   Sequence 6189 BP; 2194 A; 1366 C; 1166 G; 1462 T; 1 other;
     ggcgcccaac gggattaaca tctaagcacc cacaccataa gaacatgtaa gtgactgttc        60
     agtgacaaaa gaaaaaaatt aaaaattccg ataaatataa aacaaagtgg cagcgtgaac       120
     gtaggcgcaa ggtgacgtaa tacataaatc tgttgaatta tttcaaacca aagtatccat       180
     acaaaccgct ttatataact aactctataa aatataaact gtgtgcgggt ttattgtcat       240
     ttcgattgtt ttctctctta ttgttggatt ttcgccaact gctaatgagt tggacctata       300
     ggaatattaa agtggaaatc gatagcgacg aagaatatag tttaggcttt gcaccccgta       360
     catcaaaccg aacagaaatg gacccagaaa cagttaaagc tttcatagat aacgctatca       420
     gcagcgcact agcacgcgaa caacaaatta gaaatgaaat gcatgccgaa attcaagcat       480
     tgagagatca agtgagctca cttagagtag aaacacctca agttcaagta tatgaaagcg       540
     taacgatcga tcccaacatt agatgcgaag ttagactaga cgttgctaaa tcggtaccga       600
     attttagtgg tgaccacgaa gaatatgtgt cttggagaca agctgccgta gaggcatatc       660
     aaattttcaa acgatatgat ggaagtgaaa cccattacca agcagtggct atattaaaaa       720
     acaaagtgtg tggcgcagca cgctcagtgc tcacatccca caatactgtg ctcaacttca       780
     atgcaatcat cgctagactt gattgcacat acgcggacaa aacgtccctg cgtgtcctca       840
     gacagcgatt agaattggtt aggcaaggtg acctagacat aatgcaatat tatgacgaag       900
     tcgagaaaaa actcacgctc gttacaaaca aaattgtcat gacacataat gaacaggcag       960
     cagctatcct caatgcagaa attaggaatg atgccctgca tgcttttatg gcaggcctta      1020
     ggaggcctct caaagcattg gtcataccgg cacagcctaa agatttgcca tccgctttag      1080
     cgttggctcg cgaggctgag aacagcatag aaagaagcat gtttgctgcg acctatgcca      1140
     aagcaatcga agataggaac cactcgaggg agcctaataa gcaaggaaat aattctatac      1200
     caaaacaggg aaaatatttc gagaaaaatc cacacttcaa acaaaaccaa aataaaaccc      1260
     aacaaagcga acccggacca agttcaagca acaggcccaa caactctaac caaggtcaga      1320
     gccaggcgca acccatggac atcgatccat caacttcaaa gtttagacaa ccgactaatt      1380
     ggggtaaacc tcagagtaac cccacatacg gcgaagctca aaagagacag aacacgtcag      1440
     aacgtgtgtc agggcaaaga cgccaaagaa tcaataatgt aactcaacag aactctaacc      1500
     aagaggatca agactacaca agtgcagcag aagctgcagt tgctgaggcc tccgatgaga      1560
     gtgattcgct aggagacaat gacctattga attttttagg gaacgctcca aattgccgtt      1620
     cgtcgagcga caattggctg gcaaaacatt gaaaatccta atcgacactg gggcggcaaa      1680
     aaattatgta aaacccgtaa aggagttaaa aaacataaca cctgtcgaca ccccattcac      1740
     tgtgaactcc atacacgggt ccagtaaaat taaagaaaaa tgttccatga aaatttttgg      1800
     aaaaagtgcc ccatttttta ttttagacac tcttgacact tttgatgcta taataggctt      1860
     cgatttattg acacaagcag gggtaaatct aaatttaaac aataataata tcacctacgg      1920
     caatacgacg gaggtgttgc agcaccacct atgcgataat gtacacttta cacgcataga      1980
     tgacatagta gtccccgata atgtaaggga caagtttaaa aatgtcatac tgaaaaggat      2040
     tggcacattt tcgacctcta acgaggcgtt gccgtttaac acatcggttg tggccacaat      2100
     ccgcaccatt gacgacaaag aggtatactc aaaactatac ccatacccgg caagcgtagc      2160
     cgattttgtt aacaacgaaa tcgctcaatt actaaaaaat ggcattataa aaccatcacg      2220
     gtctgcatac aacagccctg catgggttgt tgataaaaaa ggtacagacg caaacggcaa      2280
     caaaaataag cgactcgtca tcgatttccg aaagttaaac gagcgaacca tcgccgatag      2340
     gtacccaatg ccgagcatcc caatgattct agccaatctt ggaaaagcga aatttttcac      2400
     aacactagat ttgaaatctg gataccacca gatttatcta aatgaaagag atcgcgaaaa      2460
     aacggcattt tcggtaaatg gcggaaaata cgaattctgc cggctaccct ttgggttgaa      2520
     aaatgcggga agcatctttc aaagggcaat cgatgatgta ttaagagaac aaatcggaaa      2580
     aatatgctac gtctatgttg atgacgtgat aatattttct gaaaacgaaa cggaccatgt      2640
     caaacacatt gacacagttc tccaacagct ttacgacgcc aacatgagag tctctaaaga      2700
     gaagactaaa ttctttaaag agagcgttga atatttgggt ttcattgtct caagcaatgg      2760
     agcaaaaact gatcccgaaa aagtcaaagc gatccaagaa ttcgctgaac caaaaaacct      2820
     cttcgcatta agatcgtttt tgggacttgc tagttactac agggtgttta ttaaagactt      2880
     tgcgtcaatt gcgagacctt taactaacat gcttaagggc gaaaacggca tggtaagcaa      2940
     acacatgtcc aaaaaggttc caattgactt tgacaatgca caacgcgacg cttttgaccg      3000
     cctaagaaat attttggcgt cagaagacgt catactcatg tacccggact ttaaaaaacc      3060
     ttttgatcta acgaccgacg cttccgctaa tggtatcggt gcagtactgt ctcaaggggg      3120
     aaggccaatc acaatgatat ctcgaacatt aaagcagagt gaatctcatt atgctaccaa      3180
     tgaaagagaa ttattggcca tcgtatgggc tctcggaaaa ttacagaact atctgtatgg      3240
     caccagagaa cttcacattt tcacggacca tcagccgctc accttttcag tgtcagaaaa      3300
     aaacactaac gcaaagatta aaagatggaa agcatatatt gaagagcata acgcacagat      3360
     tcattacaag cctgggaaag aaaacttcgt ggcagatgcc ctgtcccggc aaaacgttaa      3420
     tgccctgcaa gatgaaacac aatcatgtgc tgctaccatc catagtgaga tatccctgac      3480
     ctacacaatc gatacaacag acaagcctgt taaccttttt aggaaccaaa tcatcctaga      3540
     agaagcacgc tacaatttgt atcgtagact tatcatattc ggcagaaaaa cccgccatgt      3600
     gatacaattc acagacaaga atgacctcct cgaatccata aagcttgcag taaacagtga      3660
     tgtggtaaac gcattctatt gtgatctccc gaccttggca gtctttcaac acgaactcgt      3720
     atcactctac cctacaacaa agttttggca ctgcaagaat attgtagccg acattactag      3780
     caaaagtgac caaatagaaa tagttaataa tgaacataat cgcgcacata gagcagcgca      3840
     ggaaaacatg aaacaaattc ttcgcgaata ttattttcca aaaatggcca aattaactaa      3900
     ggaaatagtc tcaaattgca aggtgtgcac taccgctaag tatgaccgtc acccaaaaaa      3960
     acaagaactt ggggaaacgc ccataccatc ctatactggt gaaatgctgc acatagatat      4020
     cttctccact gaccagaaac tattcttgac ctgtgttgat aaattttcca aattcgccat      4080
     tgtacaaccc ttattatcca gatcaataat agatatcatt aaccccatgt tacagttaat      4140
     caacattttt ccaagaataa aaacaatcta ttgcgacaat gaggcatcgt tcaattcaga      4200
     aacggttacc tcgctactaa aaaatcaatt taacatagac atagtcaaca cccccccact      4260
     acatagctgc tcaaacggac aggtggagcg ctttcatagc actctattag aaatagccag      4320
     atgcattaaa attgacaaaa aattaaataa cacaacacag ataataataa gagcaactat      4380
     agaatataat agaacaattc attcagttac agaacagaga ccattagacg tcattcactc      4440
     tcaaaatatc gagttacaac ataatatcaa agacaggata atcaaagccc agcaagatca      4500
     actcatcaga tgtaacmcaa ataggcaaaa tagggtattc gatgtaggtg aaaaagtatt      4560
     cgtaaaaaac aacaagaggt taggaaacaa gctgacccca ttatgttctg agggacacat      4620
     acaagcagac ctagggacgg ctgtacttat taaggggagg gtggtccata aggacaacct      4680
     taaataaact acaacatttt tttggttcca cacagttaat ataacttcgc ttcacatttc      4740
     ctacaggttg accatcataa tactgtcaat tctaaccgca acgggggcgc gcatcaccga      4800
     cttctcaaat gcgaaataca ttcctgtgct agacggtagt gttctactat gggagcaaag      4860
     taaattcata cgacactcga ctaacttgac agaattctca gccatcatag acgataccat      4920
     aaaattatcc gaactatttc ccctctctca catgcgaaag cttttagaag tagacataga      4980
     acacgtccaa aacttattgt ccactctaac aatacaccac aggatagcaa gaagtttaga      5040
     cttcctaggc acagcactaa aagtaatagc tggaacgcct gatgcgtctg acttggagaa      5100
     aattcgaaat tcggaaacac aattaataga atcaaacaat agacagattg taatcaacac      5160
     agaaactcag aaacaaatca acctgctcac agagacagtt aatagaataa tcaaagctaa      5220
     aaagtctgaa atggttgaca ccccacactt gtatgaaaca cttttagcaa gaaatagaat      5280
     gcttatcaca gaaattcaaa accttatgct tacaattacg cttgccaaat cagatataat      5340
     aaatccaact atttttgatc ataaagactt aaaatctatt ttcactgaac agctcacaga      5400
     ggtctccata gttagtttaa tggcagtatc aaaaattaaa atatttcaat ccgacagcac      5460
     ccttcatata attatagaat accctaatat aagatttgtt tgtaaaaaga tcataatttt      5520
     tccggtggca catcaaaaca ccgtgctaca attacacgat aacatagtag ctgaatgcaa      5580
     ggacggagtg aaagctgcca ccgattgcgt cacaactaac cacgcaacat tttgcaagct      5640
     agccgcgcat gatacatgcg cccgcggatt acactcaggc gaatcagcca tatgccgaac      5700
     gcagcccagt cacctggaac ctattacaag ggttgacgaa ggaatgatca tcatcaacca      5760
     gcctgcgagc gttagtatag atggaggccc cacaatatac gtcaggggaa ctaatctcat      5820
     aacgtttgag cgcaacgcca tggtaaacga caccacgtat ctcaaccacg ataaaactgt      5880
     cgatatggtt cctggcattc cgacttcacc tttactgaac attacgggac acgatcacgt      5940
     gctaagccta cccctacttc agcgaatgaa tgaacacaac ctgaacgcca ttagggaatt      6000
     aagcgacgac atgtcatcta acggatctcc caagttctgg ttcgccattg gagtaattat      6060
     cagcctcctg ttctgtagcc tcatcgtagt tggcctatgt tggtatcgga agaacacctc      6120
     gattaagttg cagagattca tccaggagtt gcgcatcacc gaggacggca atgaacttaa      6180
     agggggaat                                                              6189
//
ID   Gypsy-3_DHyd-LTR repbase;    DNA;    INV; 533 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-533
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2417-2417 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 533 BP; 153 A; 128 C; 98 G; 154 T; 0 other;
     agttaacaac caagttaacg aacaaccctc gcgttaagtt cggagcaacc cacgcagcta        60
     gaacatcaac gtatcggatt tcggttgcac tgcgaacgca acgtctgcaa aatatgctat       120
     tgcgggcatt agcagttttc gttatatgtc gcaatcgcag acattgtagc gctaacataa       180
     atatgccggc atagctccgc gcggccgaca gcccatggcg tgatctttat ataatatgta       240
     tttaggtttg gattcatatt tcccttttat gtacttagct ttagtctttt attcatttca       300
     ttgtcacgat cagttctgtt ccaataacgt aagctaacgc acgttgaata aacattgctc       360
     cggcaattgg ccgtataatc ttgacttatt aattaatata tcactgagcc acaaggccag       420
     tgatctgata cttaaccgta tctcaaccta atctacatta tcaactaaca acctggatct       480
     acccgacggc atccccttac gaggactact ggagcggata gacctaaata act              533
//
ID   Gypsy-3_DKi-I repbase;    DNA;    INV; 5443 BP.
XX
AC   .
XX
DT   25-JUL-2011 (Rel. 17.07, Created)
DT   07-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DKi_;
KW   Gypsy-3_DKi-LTR; Gypsy-3_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5443
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1309-1309 (2012).
XX
RN   [2]
RP   1-5443
RA   Bao W.;
RT   "Sequence refined.";
RL   Direct Submission to Repbase Update (07-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   Positions [5414-5923] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           4015..5376
FT                 /product="Gypsy-3_DKi-I_2p"
FT                 /translation="MGYQATGFFFPNRTSQRTENVVADALSRSFEEIDISA
FT                 IDLEIYPEIDLSSSAFQSEEYSALRDKFKSLKSPDFKVIDEFIYHRATFPN
FT                 SYDVSPDDCWKLFVPESLRQSVISSAHDQPTSAHCGMAKCLERIRRRFYWP
FT                 NMVINVRDYIRNCETCQTTKYPTHSLKPPMGAQVQSERIFQRLYLDFIGPF
FT                 PRSNSGNIGILIILDHFSKFTFLKAVKKFTAKVVINILRDEIFSCFGVPET
FT                 VVSDNGTQFKSRDFSDFLSKYGVRHMFTGAYAPQSNSAERVNRSINAALRA
FT                 YIRTDQREWDTFLSSINCSLRNSIHQSIGLSPYHVVFGQHMISHGHDYKLL
FT                 RKLNLLAEGEVSLTKTDEFQRIRSNIGKHLNKAYEANQKSYNLRTRPRSFE
FT                 VGQEVVKRNFVLSNAAKDFNAKLAPVGIKARVKARIGQSIYLLEDMNGKEL
FT                 GRFHAKDIW"
FT   CDS           join(642..2093,2097..2210,2214..3785)
FT                 /product="Gypsy-3_DKi-I_1p"
FT                 /translation="MLTHSNENLVDLQTDESANCIICNGPVCNLDLLEARC
FT                 KHSFHKLCLDNYSKNNDKCPRCGQTFSQPEVGPHSAPLSRSQGHKVQTRSA
FT                 SRNAAKQNGGSEQNSLQEIRSEGNSDSRVVTEDHVEKLIQKSMQTFQANML
FT                 QSVTEQITLAFTQLNRSTFANNGQGEPQRDFSRDGSDANSDRNNIQQARNS
FT                 PDFRSDRSDLSLDRPDRISNIISNWRIKFSGSANDIAIEDFIYRVNCLTSQ
FT                 CLNGNFELLSHFANLLFAGPALAFYWRVHRSADNMNWNLLCRRLKERYQDQ
FT                 RSDREIKCAMRRRKQGNTENFDDFLDAMLSIADSLREPMQDSEIAVEVRHN
FT                 LRPEIKHELLHIDTPNLATLRKECHRHEEFFLNTRMKPIQRSNPSKRFVNA
FT                 ILQEEDSESQSEEEREVEDEICVVKTAEKIKCWNCEETGHSYHNCLKPRRI
FT                 FCYGCGTPEVYKPNCAKCNSVSENPKKDIRYAKKTDVRRLRKYQQNQILWQ
FT                 MMFIPFCLPFNQTYQKPNLLTHTICGQEYAKRRSQILQANPVYRRKQRSSR
FT                 RIRKFWTRKRSLNRFMISSIAQNKSDIRPFTNIEIFGQPYLALLDSGANKS
FT                 VIGGELAKQIISAKPFNKFKSVVRTADGQSQYVAGTIHIPLTYNSISDNFE
FT                 FLIVPSIKHDVICGMDFWQNFGISIKQTVAINEINCEPEEHSNNVRLSDLQ
FT                 KSKLQKVIDFFPSFENEGLGLTRLLEHNIDTSNAKAIKQRFYPLSPAKEKL
FT                 LCEEIDRMIKMDVIEEAPSSPWSSPVILHIKPGKVRFCLDARKLNAVTVKD
FT                 AYPIPIMDGLLSRLPPVHCISKIDLKDAFWQICLDQESRAKTAFTVPNRPL
FT                 YQFKRMPFGLSNAPQTMCRLMDLVIPYQLKSHVLVYLDDLLVLSNNFEEHL
FT                 LHLSEVATQLRKAGLTINVQKSQFCLKTVDYLGYLVGEGTLQINPNKIAAV
FT                 SEFPVPKTQKQLRRFLGMTGWYQRFISNYSTVIFHLTEQLRGKTLSWNDNA
FT                 QEAFENIKASYALLLALFIPITTNHSFCSVMLHYMEWVQF"
XX
SQ   Sequence 5443 BP; 1649 A; 1178 C; 1083 G; 1533 T; 0 other;
     taattaattg gcgcccaaac gttaaggcca gcccgatgcc tgattaggca cctgtcgttt        60
     gacagccgag cttcccgtta atattcaaac catccacttc tagtttccgt ttagtatttc       120
     aaattctgtc ctggaattga tggcatctgg ataggttcgg agccataccg gaggaaatgt       180
     aatactttta actgtttttt ttctatcagt tcggtaataa tcgaacatta tagttaaaag       240
     aacattccaa tttgagtaat tgattccttg gaattatagt tctgattcaa agtcggttct       300
     ataccaggat ttcaatattc aaacactacc ttcttatcag ttaggatcga gattttatct       360
     ggctggatag attcggctag ttactcttct aattggtaag acaaaataaa ttgatattta       420
     ttttactacc ctttatttac attccgttta caacatttgt acctattgaa tgacacaacc       480
     aattgctata ctacccaggg taagacctaa actgcatttc tcatttatcg tatatcgtat       540
     tcatctcgaa cgaccagttt gttttcgtta tatcgtatct tatcttatct taccgtatct       600
     catttcgttt ttttgtttta tatttcgaaa agcgtcaaaa aatgttgaca cacagcaatg       660
     aaaatttagt agatcttcag actgatgagt ctgcaaattg catcatctgc aacggaccag       720
     tgtgtaatct ggatttactt gaagcccgtt gcaagcattc tttccacaag ctttgccttg       780
     acaattatag caagaacaac gacaaatgcc ccaggtgtgg ccaaactttc tctcaacccg       840
     aggtaggacc tcattcggct cctcttagta gatctcaggg acacaaggta cagacacgtt       900
     cagcgtcgcg aaatgcggca aagcaaaacg gtggttctga gcaaaattca ctgcaggaaa       960
     ttcgtagcga gggtaactca gactcgaggg tggtaacgga agatcacgtg gaaaaattga      1020
     ttcagaagtc aatgcagacc ttccaagcta acatgctgca gtcagttaca gaacaaataa      1080
     ctttggcgtt cacacaattg aataggtcca catttgccaa taatggacaa ggtgagccgc      1140
     agcgagattt cagtcgagac ggttccgatg ccaactcaga tcgaaacaac attcaacagg      1200
     ctaggaattc accagatttt cgcagtgatc gaagtgatct ctctctggat cgaccagaca      1260
     gaatttcgaa tattatatcc aattggcgta ttaaatttag tggttcagct aacgacattg      1320
     ctatagaaga ttttatttac cgtgtcaatt gcctcacttc acaatgcctg aacggcaact      1380
     ttgaacttct ctcccatttt gctaacttac tgttcgcagg ccctgcatta gccttttact      1440
     ggcgcgttca tagatcggca gataacatga attggaactt gctttgcagg cgtttaaagg      1500
     aaagatatca agatcagaga tctgatcgtg agattaaatg tgccatgcgt agacgcaaac      1560
     agggtaacac ggaaaatttt gatgactttt tggatgcaat gctttccatc gcagattccc      1620
     ttcgtgaacc aatgcaggac agtgaaattg cggtagaagt tcgtcataat ctcagaccgg      1680
     agatcaagca cgaattattg cacattgaca ccccaaactt agcaacattg cgaaaggagt      1740
     gtcacaggca cgaagaattc tttcttaaca cccgaatgaa gcccattcaa cgttcgaacc      1800
     caagcaagcg tttcgttaac gcaattctgc aggaagaaga ttcagaatct cagtcggagg      1860
     aagaacgtga ggtcgaggat gaaatttgtg tagttaagac ggctgagaaa attaagtgct      1920
     ggaactgtga ggaaacaggc cacagttacc acaattgcct taaacctcgt cgtatttttt      1980
     gttatggttg tggaacaccg gaggtgtata agcccaactg tgcaaaatgt aattcggttt      2040
     cggaaaaccc caagaaggac attcgttacg cgaagaaaac ggatgtccgc cgctagcttc      2100
     gaaaatacca acagaaccag attttgtggc aaatgatgtt cattccattt tgcctacctt      2160
     tcaaccagac atatcagaaa ccaaaccttt taacccatac catttgcggg taacaggagt      2220
     acgcaaagcg tagatcccaa attttgcaag ctaatcctgt ttatcgtcgc aaacagcgat      2280
     cttcacggcg aattcgtaaa ttttggactc gtaagcgatc attaaatcgt tttatgattt      2340
     cctcaatcgc acaaaacaaa agcgatattc ggccttttac aaacatagaa atatttggtc      2400
     aaccgtattt agctctcttg gacagtggcg ccaacaaaag cgttataggt ggtgagctag      2460
     caaaacaaat aatttcagct aagccgttta ataaatttaa atcggtagtg agaaccgctg      2520
     atgggcaatc gcaatatgtt gcaggcacga tacacattcc cctgacttat aactcaatta      2580
     gtgacaactt tgaattcctg atagtacctt cgataaagca tgacgttata tgcggaatgg      2640
     atttttggca aaattttggc atttcgatca agcaaacagt tgcgatcaac gaaattaact      2700
     gtgaaccgga agaacactcg aataatgtga gattgtccga tttacaaaaa tcaaaattgc      2760
     agaaagtaat agactttttt ccatcattcg agaacgaggg cttaggatta actaggttgt      2820
     tagagcacaa tatcgacaca tccaatgcaa aggcaataaa gcaacgattc tatccacttt      2880
     caccagctaa agaaaaactt ttatgtgaag aaatcgaccg catgattaaa atggatgtca      2940
     tcgaagaggc tccttcatcg ccttggtctt ctccagttat cttgcacatc aagcctggca      3000
     aggtacgatt ttgtctcgat gcaaggaaat tgaatgcagt cacggtgaag gacgcatacc      3060
     ccatccctat aatggatgga ttgctgagtc gacttccacc cgtacactgc atatccaaaa      3120
     ttgacctcaa agatgccttt tggcagatct gtttagatca agaatctcgt gccaaaactg      3180
     cttttaccgt tccgaatcgt ccgctatatc aattcaagag gatgcctttt ggattgtcaa      3240
     acgctccaca aaccatgtgc cgattaatgg acttggttat tccctatcaa ttaaaatcgc      3300
     atgtgttagt ctacctcgat gacctgcttg ttttgtcaaa caacttcgaa gaacatcttc      3360
     tgcatttatc cgaagtagct acccaattgc gtaaggctgg attaacaata aacgttcaga      3420
     aaagtcaatt ctgcctgaaa actgtagact accttggtta cctggtgggt gaaggtactc      3480
     ttcaaataaa tccaaacaaa atcgcagccg tgagcgaatt tccggttccg aagacccaaa      3540
     aacagctccg aagatttctt ggtatgactg gttggtacca gcggttcata tccaactatt      3600
     ccacagtcat tttccatctg acggaacaac tacgtggcaa aacactaagt tggaacgata      3660
     atgcccaaga agctttcgaa aacatcaagg caagttatgc tctgctcctt gccttgttca      3720
     tcccaattac gacaaaccat tcattttgca gtgtgatgct tcactacatg gagtgggtgc      3780
     agttctagct caatgcgacg attccggttg tgagcgtccc atagcgttca tgtccaaaaa      3840
     gctaaacaaa gcccagcgta actatacagt tacggaactc gaatgcatgg ctgtagtgtt      3900
     agcaattaaa aagttcagaa tgtacattga cggtcatagc tttaaggtag taaccgatca      3960
     ctcaagtctt cgatggctaa tgaaccaatc ggatctaagc ggtagattgg caagatgggc      4020
     tatcaagcta cagggttttt ctttccaaat cgaacatcgc aaaggaccga aaatgtggtg      4080
     gcagatgctt tgtctcgatc gttcgaagag attgacatct ctgcaataga ccttgaaatt      4140
     tatcccgaaa ttgacctatc atcaagcgct tttcaatcgg aagagtactc cgctctcaga      4200
     gacaaattca aatctctgaa atcaccggat ttcaaagtca tagatgagtt catctatcat      4260
     cgtgcaacgt tccccaattc ttatgacgtt tcaccagacg attgctggaa acttttcgtt      4320
     cctgagtcgt tgcgtcaaag tgtaattagt tcggctcacg accaaccaac atctgctcat      4380
     tgtggaatgg ccaaatgcct agagcgtatc agacgacgtt tctattggcc aaacatggtt      4440
     atcaacgttc gtgattacat tcgaaattgc gaaacatgcc agaccacaaa atatcctacc      4500
     cattctttaa aaccaccaat gggagcacaa gtgcaaagtg aaaggatatt ccaaagactt      4560
     tatctcgatt ttatagggcc atttccgcgc tccaattccg gcaatattgg aatattgatt      4620
     attcttgatc acttttccaa attcaccttt ctaaaagcag tgaaaaagtt tacggctaaa      4680
     gtggtcatca atatattgcg cgatgaaata ttttcatgct ttggtgtacc cgaaacagtc      4740
     gtcagtgata acggaactca atttaaaagc cgtgatttct ctgacttcct ttcgaaatat      4800
     ggcgttcgtc atatgtttac tggtgcctat gctccacaat ccaacagtgc tgagagagtc      4860
     aaccgttcaa tcaatgctgc tttaagagca tatattcgca ccgaccaacg cgaatgggac      4920
     acatttctca gtagcatcaa ctgctctctt cgtaactcga ttcaccaatc catcggttta      4980
     tcgccttatc atgttgtttt tggtcaacac atgatatccc acggtcatga ctacaaactg      5040
     ctgcgtaaac taaaccttct tgcagaaggc gaagtaagcc tgacaaaaac tgacgaattc      5100
     caaaggattc gttctaacat cggcaaacat ttgaataagg cttacgaggc aaaccaaaag      5160
     tcttacaatc ttcgaacaag accccgttct tttgaggttg gccaagaagt agtcaaaagg      5220
     aattttgtac ttagcaacgc agcaaaggat tttaatgcga aactcgctcc tgtaggtatc      5280
     aaggcccgag tgaaggcaag aattggacag tcaatttacc tcttagagga catgaacgga      5340
     aaggaactgg gtagatttca tgccaaggat atctggtgat tgctcttgat tcctttttca      5400
     gcttttattg ttaatcacag ggactaaaaa tcaaagctgt ggt                        5443
//
ID   Gypsy-3_DKi-LTR repbase;    DNA;    INV; 1844 BP.
XX
AC   .
XX
DT   25-JUL-2011 (Rel. 17.07, Created)
DT   07-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DKi_;
KW   Gypsy-3_DKi-LTR; Gypsy-3_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1844
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1310-1310 (2012).
XX
RN   [2]
RP   1-1844
RA   Bao W.;
RT   "Sequence refined.";
RL   Direct Submission to Repbase Update (07-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1844 BP; 486 A; 429 C; 390 G; 539 T; 0 other;
     tgtgggaatc gagccagtgt ggcaactcga taagttttat cgcccacatt tttcaaacaa        60
     ccgggctgtt aaagttacga tcctgccaaa tcgctaatat gcgataggac ctaaaaaaga       120
     ccacaaaaat tcgcgaacag gatttttgca agccacggtc acattggatc ccctcacttc       180
     cgttctcttt ctcacaaggc gtccccgagt tcggattaat ttttgtcgat cctaaatccg       240
     caagcatcgt gtcgatccga cagtatttgt taaagcgaat catacccata ttaagtaaat       300
     ttagtgctct aacgtatatt ggtaagcttg tgtgaataat cgatcgccgg agtgctaatt       360
     ttgccttttc aaaacagcgt cagccgtatc ggcagagtcg tccaagcgac cggcattgtt       420
     tttgccagca attgcccacc acgtgaggtg gcagtcattt gtggcattca tcgttggcat       480
     tgtctgtggc ttctcagcgg gatcaacgcc acgtgtcatc ggagcattcg cacgcacagc       540
     gtggggctgc gcttcccatt tcggcggcca tacacgtgcc gattgcggtg atcctcgatt       600
     tggattttct ttaccgcctc gctaacgtgt caccgttccc tcacacggcg cgcatattgg       660
     atcgccgttc cctcacacgg tgcacatatt ggatcaccgt gcttttcttc ggcgcaccta       720
     ttggatcgcc gtgtgtcttt ttcgtggcca catcgttctt tgccacatcg ccgtgcatct       780
     ttgccacatc gcgtgcgctc tgccgcatcc acaccttggc gggctggtct cgttccgctc       840
     acgcctcacg caagggattg cggccatccc tgtcgcacat agtgcgtgtc atcttcatca       900
     gcgcgaacga cggaagtagc attacatatc cgtattgaga gctggtggct gatccggccc       960
     acactctgct ccaggagcgg ataaacatga atgatagtgt ctaaaatata attaattttg      1020
     catataggag cttttgattt aagaattcgt acttataaac cttttcggtc gtaatttagc      1080
     aatttttttt gggagatttg gcaattataa tatcgttttg tccctcaaat aacttaaaac      1140
     acatacagct acacatcacc agtcatcagg cctgctgacg tcgatggaga aagcgtgagt      1200
     acggcctagc cgcaaaacaa caaaataaaa ctgaacccat ccttataatt tcgccaagac      1260
     ttctgaaata gtttgcacat cttaattaat taattgattc aaaagaatat taataagtta      1320
     atctatttaa tgtaaagtaa aaaaggaaaa agcgttcttt cttatcttaa attttatttc      1380
     ctttcattgg atctaaaaca aactgactca ataagaggtc tcgtaacgta aataacgtaa      1440
     acttaggctt aaggattaga tttaggaaaa tgtctttcaa tattatctca gcctgcaatt      1500
     atatgacttt gaaaatgaac taatttgata tcttgttggg cacctaaggg gatgtagagc      1560
     attggttgta taagggtgga gcctgaatgg acttcacagg ttgggagggt ttagattgag      1620
     gccaataaca tcggagcctc atcttcaata ggtacacttc cttcgtctga ttcatattat      1680
     ttaccatatc cccagctaga gtatctctgt ctacaatatt agttatgtag caccattgtt      1740
     catgtcaaca caaaacccac gcccattttc cctgagcctg ccgagcagaa aaagtagaca      1800
     gagcgtgttg aggtggacaa cgctcggtga gtgtgtttgt taca                       1844
//
ID   Gypsy-3_DMel-I repbase;    DNA;    INV; 4962 BP.
XX
AC   .
XX
DT   06-AUG-2018 (Rel. 24.06, Created)
DT   06-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4962
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1040-1040 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           892..1374
FT                 /product="Gypsy-3_DMel-I_1p"
FT                 /translation="MDRVEILALRVDDLRNKLSELNLQTNGTKSMLQQRLL
FT                 AHYRLNNEEQNISDDESVATAPMMTNENNRSWFTLKDVEGSISEFSGTIGS
FT                 VDVDQWINEVEECESTVQWNQLQMFVYAKQLLRGAARSFVKSQQNIRSWEI
FT                 LKTVLLDEFEVSVISRNTSKIK"
FT   CDS           1328..4960
FT                 /product="Gypsy-3_DMel-I_2p"
FT                 /translation="MSSKLVSSAEIHRRLNRRQKKKDESLHEFLYALMEIA
FT                 KPAKLEDESIIDYFISGIQDSPASKVVLYQAKTLKELKLSLDVYKQVCSSS
FT                 KSLNKPGSFVDKQISESKKINSDNKTRKCFKCGDDTHLLKDCRKKDFVCFK
FT                 CNQPGHRASECKIDGKFKQDQNTNVVQDRKEELKPLSIFTPSGLELKTVQY
FT                 KSMMFQGLVDTGADLCLIRRSVYTKLGRNKLTGLAKCLTGIGDSQVLTFGS
FT                 FVISVEVDGIDMQVEFHVVPDEDMGFNSILGRTILNSVDMKVTKGGTEFIS
FT                 RVVNQKKVESQRIQTLDKGSCAELFVEFKSMCMLGVEQADILDEVDLSHLS
FT                 SVQKEKALSLIGDYKPIRNCSTPVKMKILLTDDLPVFQQPRRLAECEQKIV
FT                 DDQVQEWLRDKIIKPSVSEYASPVVLVSKKNGKKRLCCDYRKLNEKIIRDH
FT                 FPMPQVDVVIEKLQSALVYTTLDLTNGFFHVPVELESQKYTSFVTQKGQYE
FT                 FLYVPFGITNSPAVFTRFIMAVLRELINSGDVVVYMDDVIVPSKNVCEGLV
FT                 KLEKVLSVASENGLKINWSKCQVLQKKVNFLGYIVEGGTIKPSGEKTSAIV
FT                 NFPLPNDKKGVQRFLGLTSYFRRFVKDFAVTAKPLSDLLRQNTKFKFDVLQ
FT                 KVAFEQLKVALTSNPVLKLYNPKLETEIHTDASKYGFGGVLLQKDPEDCLF
FT                 HPVQYMSRKTNQCEEKYHSYEPEVLSVIGALMKWRVYVLGLKFKIVTDCNA
FT                 FTMTMKKKDVPLRVARWALYLQDFDYQIEHRSGTRMRHVDALSRVSCFMLS
FT                 DTVVHRLKQAQLLDEWTKVVRSLVENKGYEDFYIENQILFKDPNRELIVVP
FT                 SQMENEIITIAHKQGHFAAKKTQDLVEKSYFIPKLKEKVVRVVDSCVECII
FT                 FNSKAGKKEGFLTPIEKGDRPLMTYHIDHVGPMEMTSKRYNHILAIVDGFS
FT                 KFVWLYPTRSTGAEEVISCLERQATNFGNPLRIISDRGTAFTAQAFKLYCE
FT                 EQKIQHLVITTGVPRGNGQVERMHKTVVSMLSKLSHESAGDWYKHVSKVQQ
FT                 IINSTPPRSTLVSPFKILTGTEMRLPNDLELNLLIKESLVMDLDEERELVR
FT                 ARASENIKQLQTENKRGFDLKRKGEIIYKIDDLVAIKRTQYGTGLKLKGKF
FT                 LGPYKIVKVNKHGRYDVEKLGDDYGPFKTSTVAEYMKPWGNSFGSNDVSGG
FT                 P"
XX
SQ   Sequence 4962 BP; 1643 A; 743 C; 1247 G; 1329 T; 0 other;
     atttgggggc tcgtccgaga aggcccaagt tgtgtatgca taagtgcgaa tttaatgagt        60
     gcgagcgaga cagaacgtga cgccgcatcg attaaaagga aaacgacaac gacgcaagag       120
     gagtcgcggt gaagctgaag caattagaag tcaatcgacg acggcgagca aaaggtgttt       180
     gtgacgcagt gtccattgga agacttcaga agacggaggc cgaaaggtgt tggagattcc       240
     gtatctagtg ctcgaagaaa aacggcagca gccaaaaggt gttggagacg ctgtgtttat       300
     tcaaaagtgc aacggcggtg accaatagtt gaaggccacg ccgtagaaat tgcaagcagg       360
     cattgaagaa aacggcagca gccaaaggtg ttggagacgc tgtgtttatt caaagtgcaa       420
     cggcggtgac caatagttga aggccacgcc gtagaaattg caagcagaca attgaagaag       480
     aacggcaata cgacggttac ggtgtatcag aagaagaaga acggtgaagc aatcagaaaa       540
     acgacggtcg cttcagtggc agaggaagca gaagaaaaat aacggcgcaa cgaaatacgc       600
     cgccacatat acgaaggcga tcgagcggca acagcgacga gagaggcgaa gcaacagaga       660
     aagaggcgag gcagtaggaa cgaaagaggc gaggacaacg aagaggcgaa aacgacgcgg       720
     caagttgtgt atcgtttgct gttaacatag atttaacaga gttggctaag tagttttgaa       780
     aactttaaag agagggtatg ttaagtagtt ttgcagcttg acgcaaagaa tatacagttg       840
     attttatttc gtattaagaa ttttgtactg ataaatttta tattatttag aatggatcgg       900
     gttgaaattc ttgcgctgcg cgttgatgac ctacgaaata agctgtctga gttaaatttg       960
     cagacaaatg gtactaaaag catgctgcag cagcggctcc ttgctcacta cagattaaac      1020
     aatgaagaac aaaacatttc ggacgatgag tcagtagcaa ctgcaccaat gatgacaaat      1080
     gaaaataata ggtcatggtt tactctaaaa gatgtcgaag gtagtatttc tgaattctca      1140
     ggtactatag gtagtgttga tgttgaccag tggataaatg aggtagaaga atgtgagagt      1200
     acagttcagt ggaaccaatt acaaatgttt gtctatgcga agcagctttt acgaggtgct      1260
     gctagatcgt ttgtcaaaag tcaacaaaac attcgaagtt gggaaatatt gaaaactgta      1320
     ttgctagatg agttcgaagt tagtgtcatc agcagaaata catcgaagat taaatagacg      1380
     gcaaaagaaa aaagatgaga gtttacatga attcttgtac gcactgatgg aaatagctaa      1440
     gccagcaaag cttgaagatg agagcattat agattatttc attagtggca ttcaggattc      1500
     ccctgcaagc aaagtagtgc tgtatcaagc aaaaacatta aaagagctaa aacttagttt      1560
     ggatgtttac aaacaagttt gtagttcaag caagtcatta aacaagcctg gatcattcgt      1620
     cgataaacag atttctgagt ccaagaagat taacagtgac aacaagacac gtaaatgttt      1680
     taagtgcggt gatgataccc atttgctaaa agattgtagg aaaaaagatt ttgtttgttt      1740
     taagtgtaac caaccaggac atcgcgcatc agaatgtaaa atagatggaa aatttaagca      1800
     ggatcaaaat acaaatgttg tacaagatag gaaggaagag ttaaagccat taagcatttt      1860
     cactccttca ggtttagagt tgaaaactgt gcagtataag tcaatgatgt ttcaaggatt      1920
     agttgataca ggtgctgacc tttgtcttat acgcagaagt gtttatacta agttgggcag      1980
     aaataagttg acaggcttag cgaagtgttt gactggcata ggtgatagcc aggtgcttac      2040
     attcggtagc tttgtaattt cggttgaggt agatggtata gacatgcaag ttgaatttca      2100
     cgtagttcct gatgaggata tgggttttaa ttcgatttta ggaagaacaa tcttaaacag      2160
     cgtggatatg aaagtaacca aaggtggcac ggagtttata agtcgagttg taaaccaaaa      2220
     aaaggttgag agtcagagaa tccagacatt ggacaaagga tcatgtgctg agttgtttgt      2280
     tgaattcaaa agtatgtgca tgttgggggt ggagcaggct gacatattgg atgaggttga      2340
     tttatcacat ttgagtagtg ttcaaaaaga aaaagcttta agtctaattg gagattataa      2400
     gccaattcga aattgttcga caccagtgaa gatgaaaata ctgttaaccg atgatttacc      2460
     agtattccaa caaccaagac gtttggcaga gtgtgaacaa aagattgtgg atgatcaagt      2520
     tcaggaatgg ttgcgagaca agattataaa gccgagtgtg tcggaatacg catcaccagt      2580
     ggtgcttgtt tcgaaaaaga atgggaaaaa acgattgtgt tgtgactatc ggaaattaaa      2640
     tgaaaagata attcgtgatc actttccaat gcctcaggtt gacgttgtta tcgaaaagct      2700
     tcagagtgct ttggtgtata cgactttgga tttaactaac ggtttctttc atgtgcccgt      2760
     tgagttggaa tcccagaaat atacctcctt tgtaacacaa aagggacagt acgaatttct      2820
     gtatgtgccc tttggtatta caaactcacc tgcagttttt actcgattca taatggcagt      2880
     cttaagggaa ctaatcaaca gtggagatgt agtagtatac atggacgatg tgattgtgcc      2940
     cagtaaaaat gtgtgtgaag gattggtaaa gctggagaag gtgttgagtg ttgccagtga      3000
     aaatggatta aaaataaatt ggtcgaaatg tcaggtgttg caaaagaaag ttaacttttt      3060
     ggggtatata gttgagggtg gtactattaa gccttctgga gagaagacaa gtgctatcgt      3120
     taattttccg ttgccaaatg ataaaaaagg tgttcaaaga ttcttaggat tgacgtcgta      3180
     ttttcgtaga tttgtcaaag attttgcagt gactgctaag cctctgtcgg accttttaag      3240
     gcaaaatact aagtttaaat ttgatgtgct gcagaaggta gcgtttgaac agttgaaagt      3300
     agccttaact tctaatcccg tattgaaatt gtacaatccc aaattagaaa cggaaatcca      3360
     tacagacgct tcaaaatatg gtttcggtgg tgtattgtta caaaaagacc cagaagattg      3420
     tttgtttcat ccggttcaat acatgagtcg taagactaac caatgcgaag aaaagtatca      3480
     ttcttatgag cctgaggttc tttcagttat cggagcatta atgaagtggc gtgtgtatgt      3540
     gttgggtttg aaatttaaga ttgtgactga ctgcaacgcg ttcactatga cgatgaagaa      3600
     gaaggacgtt cctttgaggg tagctaggtg ggcattatac cttcaagact ttgattatca      3660
     aatagaacat cgctcaggga cgagaatgag acatgttgat gcgttgagta gagtatcgtg      3720
     ttttatgctg agcgatactg ttgtacatcg cttgaaacaa gcacaattac tcgatgaatg      3780
     gacgaaagta gtgagaagcc ttgtagaaaa taaagggtat gaagattttt atatagaaaa      3840
     tcaaatactt tttaaagatc ctaatcgcga gcttattgtt gtaccgtcgc agatggaaaa      3900
     tgaaataatt acgattgctc ataagcaagg acattttgct gcgaagaaaa cgcaagattt      3960
     agttgagaaa tcttacttca taccaaaact taaagaaaag gttgttcgtg ttgtggacag      4020
     ttgtgtggag tgtattatat ttaattcgaa agctgggaag aaagaaggtt tcttgacccc      4080
     gattgaaaag ggagatagac cgttgatgac gtatcacatt gaccatgttg ggccaatgga      4140
     gatgacgagc aagcgctaca accacatttt agctatagtt gacggttttt cgaaatttgt      4200
     atggttgtat cccacccgta gcacaggagc agaggaagtt ataagttgtc tagagcgtca      4260
     ggctactaat tttggaaatc ctttacggat tatctctgat aggggaactg cgttcactgc      4320
     acaggcattt aagttgtatt gtgaggagca gaaaattcag catctagtga ttacaacagg      4380
     tgtaccacgt ggaaatggtc aggttgagag aatgcataag acagtagtgt cgatgttgtc      4440
     gaagttaagt catgaaagtg caggagactg gtataagcat gtcagtaagg tgcagcaaat      4500
     aattaatagt acaccgccta gaagcacttt agtgtcgcct tttaaaatct tgactggcac      4560
     tgaaatgcgt cttccgaatg atctagagct taatttgtta ataaaggaat ccttagtgat      4620
     ggatttggat gaggagagag agctggtgcg cgcaagagct tccgaaaaca taaaacagtt      4680
     gcagacagaa aataaaaggg gtttcgattt aaagcgcaaa ggtgaaataa tttataagat      4740
     agatgatcta gtagctatta agcgtactca gtacggaact gggttaaagt tgaaaggaaa      4800
     atttctagga ccttacaaaa ttgttaaggt aaacaagcac ggaaggtatg acgtagaaaa      4860
     acttggagac gactatggac cttttaagac atcgacagtc gcagaatata tgaagccgtg      4920
     gggaaattca ttcgggtcga atgatgtatc aggagggccg at                         4962
//
ID   Gypsy-3_DMel-LTR repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   06-AUG-2018 (Rel. 24.06, Created)
DT   06-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-303
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1052-1052 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 303 BP; 128 A; 52 C; 57 G; 66 T; 0 other;
     tgtgggaaat gaaccagatc agcgaactaa aatgatcgat aacacagaga gcaagagaga        60
     acggcgcagt ggcaacgctt attaacggaa agaacaaaaa gaggacttcg agtagaatgg       120
     tgaacgagag cagtcgcaag tttttcaatc gcgctatata cttacgcaac tagagccaaa       180
     caattgtcat caaacaatta aattataata agcgagaact attgtcatca aacataataa       240
     agtgtactat aaccaattgt cattaaacaa taaagtaaca cattataata gaaacttgct       300
     aca                                                                     303
//
ID   Gypsy-3_DMo-I repbase;    DNA;    INV; 5067 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon fromm Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5067
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 5067 BP; 2112 A; 1053 C; 637 G; 1265 T; 0 other;
     ggcgcagccg gtaggattgg tttggtgaat aattaagatc atcattctaa tccgctaaag        60
     tactacgtga cctctcgcgt gtgcatgcag acttcttgtt taaaaataga ctatttcgaa       120
     gttctgcgta gtggaaatca accactacat aacatttgtg tccgggactt acatatctct       180
     cgatcccaaa aagtcataag tgttatataa aaaaaaattt tacaacccgt tcaactataa       240
     acgattaatc caactaagtg aaataatcga gtgaatgaac aattcaatca caattaaatg       300
     ccaactgtgt gcaagttaaa agtgaattaa caaaaccaaa aactgttcaa ctaataacga       360
     ttgatccaat taagcgaaac aatcaaaaga acagaaaccc actcacaatt tcgtgccaac       420
     tgtgtgtaac ctaatagtga gctaactatt taaaaaaact ctcaaacaaa caagtgctta       480
     agaaccaatt aaacggctcc accatgactc tggaattgtc ggagacccac ctcaatcagg       540
     ccctaactct tctaaggcag gtgcctatat tcgacggtga caccaacgga ttaagtgctt       600
     tcatcagacg tatcgactat ataatgcaac tatatccaac aaaggacgtc cgccagcata       660
     gcctaatgta tggaaccatc gagatgctac taactggagc agcacaacga gtgtcccaac       720
     tcacacaagc cacaggttgg actagtcttc gatccgccct gatcagtgag ttcaaaactc       780
     acacaccttg cgaggaactt ctacgacgtt tgtacaacac caatttcaac ggaagccttc       840
     gtaagtttat cgaagaatta gaacataaga cattcataat tgtaaacaag ttaacattag       900
     aaggcgaccc cgccaatgct acactctata taaatgcaat gaataataca gtaaaagaag       960
     ttattactag aaagttacca gataggctct atatgacttt agcgaagttt gatatttcaa      1020
     cagtgtctaa tttaaaacaa gtagcccaaa gagaaggctt atatgaaaat agtttcgcag      1080
     ataaacccaa gtactcttcg aagtcaactg attctcaaac ttattctaaa caaaaccaaa      1140
     ctcaaagtaa ttataaacca acacaaaatc aaacgaatta caaacaaaat aattatcaat      1200
     ccacttcaac aggacagaat aatcctacta accaacaact ttatactgag ttccgtagca      1260
     aattaaatca cgaaacgcaa caaaatcctc taaactatca acagaccact caaactcaaa      1320
     gtcctttccc taaccaacca actaaacgaa ttagagaaag caacagcgga cagactaaaa      1380
     tggattggtc agaaaatttt catcaatctg cctcggatca aaccagaccg ataacaccaa      1440
     tcgaacaaac ccctacatca gactcatctt aaatgataca ccccttaaat gcataataga      1500
     cacaggttct tccataaacc ttattaacaa aaactttttc aatttcccag aaactaaaga      1560
     acatctaaaa gttcaaacca ttaaaggtat aatagaactc aataaaagcg tctcattcgc      1620
     aagcagcaaa ctctgcccca ctatacaaaa attctattgt cacaatttct cagacagtta      1680
     cgatatacta ttaggtagaa attacctctc ggcatccaaa gccatcatta attatgcaga      1740
     agataacata accataggga actacacttt caaattcaaa tataataaag aaatttccaa      1800
     tgaaacccct taccctccaa cagaattcga gtacgactta ttttcgtacg aaataaataa      1860
     taatattgaa gaaaaatacg aatacagact ggaccatcta aatccagaag aaacaaataa      1920
     attaaaaaaa aatacttcac gactatagtg acattcagta cagaaaaggt gaaaatttga      1980
     cctttactag tacaatcaaa cataaaataa taaccaaaca tgaggacccc atctataaat      2040
     acccttatag acaccctcaa attcttgacc aagaagtcaa caagcaaatt aacgaaatgt      2100
     tagaacaggg aatcattaga aaatctaatt caccctattg ttcacccata tggatcgtac      2160
     ctaaaaaaga ggacgcttcc aaagaaaaaa aatatcgatt agtcattgac tatcgtggac      2220
     ttaacgaaat cacaatagat gataaatacc caatacccat catggatgaa atccttgata      2280
     aacttggcaa atgccaatat ttcaccacta tcgatctagc aaagggcttc catcaaattc      2340
     aaatggaccc tcaatcaatc gcaaaaactg cattctcaac aaaacaaggg cattacgaat      2400
     tcacccgtat gcctttcgga ctaaaaaacg cccctgcaac ctttcaaaga tgtatgaata      2460
     accttaatct tcaaagactg tctagtttat ctcgacgaca taatcatatt ctcaacttca      2520
     ctagatgaac acttagcttc cataaaaaag gtatttgaca gattacgcaa agcaaattta      2580
     aaactccaat tagacaaatg cgaatttcta aaaaaggaaa cacaattctt aggacatata      2640
     ataacaacag aaggaatcaa acctaatccc gataaagtag cagctatagt aaattttcca      2700
     attcccaaga caccaaaaga aattaaatct ttcctaggtc tttgcggatt ttaccgcaag      2760
     tttattccaa attttgccaa aatagcaaaa ccactcactc taggattgaa aaaggaatcc      2820
     aaaattgata taactaacca agaattcatc tcagctttcg agaaaatgaa agtacttata      2880
     acaaatgacc caatactaat ctatccagat ttcaataaaa ctttctctct aaccacagac      2940
     gcaagtaatg tggctatagg agcagtcctc tcacaggacc acaaagcaat ctgtttcgca      3000
     agtagaactt taaatgatca cgaactcaat tattcagcaa tagaaaaaga actattagcc      3060
     atcgtatggg ctaccaaata tttcagacca tatctcttcg gtcgaaaatt ccaaatcctt      3120
     agcgatcata aaccactagt atggctacac aatattaaag aaccaaacat gaaattacaa      3180
     agatggaaga ttaaattaaa cgaatacgac tatactatta aatatctacc aggaaaggaa      3240
     aaccacgtag cagatgccct ctctagaatc aaactagaag aaaatctttt aggagaagaa      3300
     attaacagtt cccgagcaac cattcatagt gctcaagaag acaatcaaaa cttaatatct      3360
     atttcagaaa gacctttaaa cttatataac agacaaatcg aatttataaa aggtaacgaa      3420
     gacaaaatcg acataataca ttatttccat aaaacaaaaa taaaaataac atacatagaa      3480
     atgacagata cacttgccaa aaacataatt aaagaatatc tttgtttaaa aaataatgcc      3540
     ttatactttc atcacctctc agatttccca atattccaaa aagcttacgc tgatattata      3600
     aatcccgaaa gtaaatacga caattaattt cagaaatcac catattacta ctatcagttt      3660
     tatcattggc atctcccacc ctcaatcaaa gcatcgaaat caacccaata gaagcaccga      3720
     acggctactt agttttcaaa acaggaacca tggacttgcc atctgactac gaatatcatt      3780
     acttaacagc gaacttaaca aaaatacaaa atacgtataa caacctactc aaagagacag      3840
     aaccgtttaa agacattacg catataaaat acttaataga caaattaaat cgccaaatga      3900
     atggcataca aattattaaa agaaataaaa gaggtctaat aaatgcaata ggaacagtaa      3960
     gcaaatatct cttcggcact ttagaccaaa ccgacaaaga agaattagaa caaaaaatca      4020
     acaatttaac ccaaaacgat gacttaagct acttaataaa cgcagtaaat aaaaacatag      4080
     aattgctcaa taatttaacc acctcacaag aggcagaaaa gaaactagat tatctgatat      4140
     tcaatataga acacttcaca gaatatatag aagacattga gttaggaatg caactaacaa      4200
     gactaggcat tttcaacccc aaacttttac agcatcagca tatgctaaat ataaattctg      4260
     aaaaaattct aaacataaag acttctactt ggtttaaatc agacacaaac gaaatattca      4320
     taatttcgca tgtaccgaaa aaaataagca aaacaccact ttataagatt ttaccatacc      4380
     cagataacca aaataataca ttaatagaaa atacttttga gacttattac atcttaaata      4440
     ataaagcata tataagagcc acaaagaaac aagaaacaaa cgattgtata agtagcataa      4500
     tcactcaaaa atcagcagaa tgtaaatata ccaaaaaatt taaaacatac caaatcaatt      4560
     atatagaacc gaacattatt gtaacttgga actacccaaa atcagaaatc attcaaaact      4620
     gtaataaaaa taacattaat attcagggta ataatataat taaaatatat gattgtagcc      4680
     ttcaaataaa taacatctca attgtaaaca cactttccga ctacacacaa actatctatg      4740
     taacaaataa tatcacaaaa acagaaccaa tatcattact acaaacaaag caaataattt      4800
     tagaaaatac taaatataat aagacattca atattataac cactacaact tttataatta      4860
     ctatcataag tctaatacta tttgtaatca ttaaatttaa aacaatatct aagaaaatta      4920
     ttataagaca cgaaacagcc ataacatcaa gtaattcaac accagaagag caaccactcc      4980
     ccgaaactca tgcaccatta gaaaccatac cacaattgta ccctatattt tccgcctgag      5040
     gacaggctaa tctctttagg atgggga                                          5067
//
ID   Gypsy-3_DMo-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon fromm Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-398
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 398 BP; 135 A; 111 C; 46 G; 106 T; 0 other;
     agtaatatat ccatcagcac tcacccacac taaaactctg caccaaagcc acgatcccct        60
     tcataactca acataaacaa atcgccctag cgactactta taaacaaatc gcctcagcaa       120
     caatcatccc atcgtccaca tatacaaacg aatcgcactc caacgcatta aacccttccc       180
     gtgggaactg catacgcagc atatttggga gtcaccgatc aggccactca cttcgccaaa       240
     atcacgccac catcgataca tatttctagc tatataagac aaacaaatta tcaatcagta       300
     gctcagtttt aattcagctc taagaccgct tgtactctgt tataagttat taagaataaa       360
     ttttttttta tttcaacaat aacgtcggtc ttattatt                               398
//
ID   Gypsy-3_DPer-I repbase;    DNA;    INV; 5851 BP.
XX
AC   super_615;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DPer_;
KW   Gypsy-3_DPer-LTR; Gypsy-3_DPer-I.
XX
NM   Gypsy-3_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5851
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_615; Positions    2259    8109.
XX
CC   Positions [4897-5406] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           996..2552
FT                 /product="Gypsy-3_DPer-I_2p"
FT                 /translation="MSLDWSFDEIDQNDHSDIICCICVRQVEYRTQLLRTS
FT                 CNHVFHLVCFNTRRGEKTVCPACNKPLQSSAPSLAEELAVAQASASNVESS
FT                 QLRMRTRSQRVTAGPAANTENLPSVGPTEVGVPIMPVQSSEPANEASPGLA
FT                 QMAQALTDAMGQIGLLSQAMTQMTQTMEIGFQRLASPTVQPPNDQAAGSSQ
FT                 PSGENQTFEQLFQIPTRESVGAPINQANDSNVSVTPWGSQQIAGLRPDRIG
FT                 QIIAGWKVRFSGNSSMSVEDFIYRIEALTKQTLEGNLDLVARNAIYLFEAS
FT                 ASEWFWRYHKSVPSVTWPQLSTALKTRFRDGRTDLEIRTAIVQRKQKPHEL
FT                 FDTFYEAIVTLSDKLVNPMSEMSLLEVLKSNLLADIQHEILYIPILSVAQL
FT                 RNIVRTRERFLQSVAKPMGIAEPKRNPIRRQVHEIVVQTDKEGDEVDETEQ
FT                 LDIAAVTLSCWNCGCQGHRYQDCVGDRTVFCYGCGKRDTYKPSCSRCNDPK
FT                 NSSSRAQSTGARKPNSSKATNTI"
FT   CDS           2803..5775
FT                 /product="Gypsy-3_DPer-I_1p"
FT                 /translation="MDTGASISCIGGKFAADLVQNPNQIKPVRAAVRTAHG
FT                 QSQPIIGKVTTEVGFQGQKKVLKLFVVPSLAQDLYLGIDFWSRFNLLPAFL
FT                 ANKSSSPEVSSLAFDSTLHVCLSTHQQAQLAETVNLFPSFAKQGLGKTGWL
FT                 SHDIEVGSGKAIKQRHYAVSPAVEKLMYVEVDRMLALGVIEESDSAWSSPV
FT                 VLVRKPGKVRLCIDSRKLNEVTVKNAYPMPLIDGILSRLPRAEFISSIDLK
FT                 DAYWQIPLEVSAREKTAFTIPGRPLYQYTVMPFGLCNAPQTMSKLMDKVIP
FT                 PSLRNEIFIYLDDLLVISESFEQHIQVLNVLSARLREAGLTINVEKSKFCL
FT                 KEIKYLGHIIGNGTIQTDVEKVQAIQEFPVPRSVKQVRRFLGLTGWYHKFI
FT                 KNYAGIAAPISDTLKSKRKFEWTDEAQNAFDSLKSQMCNAPVLHSPDFTIP
FT                 FSIHCDASHTGVGGVLMQSDEDGNEVPIAFMSRKLNQCQRNYSVTEKECLA
FT                 AVMCVKKFRAYVEGHQFSIITDHASLKWLMSQADLNSRLARWALKLQGFTF
FT                 KIFHRKGSQNIVPDALSRVHTEDLSYIGIDSLVDLQSEAFKSTDYQELIAK
FT                 IQANPDRLPDVKVMDNLLYRRAEHATGEQISDDMCWKLWVPRALVTEVLKQ
FT                 GHEHPLASHSGINKTLERVRRFYYWPNLAGDVKAFINNCEVCKCCKHPNRP
FT                 LRPPMGKAGETFRLFQKLYVDFLGPYPRSRSGNIGIFVVLDHFSKFPFLKV
FT                 VKKFTADAVIRFMEEDLFHCFGVPEVIVSDNGVQFKSHKFNDLLAKYQIRH
FT                 SYTAAYAPQTNASERVNRSVLAAIKAYIKPDQSNWDEQISFITCALRSSVH
FT                 AAVKSSPYRVAFGQNMITGGSTYQLLRNLSMLEDRTVVFDRDDSFELIRKT
FT                 AAEAKKQQHVRNENIYNLRSREVNFQVGQEVYRRNFDQSSFVKGFNAKLAP
FT                 TFRKARIKKRLGNSYYELEDFQGRFIGKYHAKDIKQ"
XX
SQ   Sequence 5851 BP; 1642 A; 1282 C; 1392 G; 1535 T; 0 other;
     ggtaaagaca aattttaaat ggcaattggt tcgaaaagtc tgtcacgatt ttatggcagg        60
     gtttcttaaa gaatttgtaa atttggcgcc caacgtgggg cccttcttcg gcttgccccg       120
     accaagaaag ttttataaag tcatcaacac caatgcgagc tgcatctcaa tgcagtgtca       180
     caagacgtat ttcttcatcc attaattccc aacagatata catggtcgtg cattgtctgg       240
     gtgattgact tcgagtagct ggattgcgta gcagtttcta aaagacttta aagccccgcg       300
     ctcgaggtta atcaaattac taggcatagt aacgaacctg tagtatctgg ccggataggc       360
     cactccgcta aatagcgcgt tctaatgttt cggtcggatt taggtttcaa agtggattag       420
     ctctactgcc tacccaccaa gatgggagcg tgttgtttgg gggatgaact tgtccatacc       480
     gttgctgatc attgtctgcc gttttggcct ggatcaggtt agtcagtggc ttagagctag       540
     ggcctgcccg cgaacgaagc caatagaatc ggagatggta tatttcctgg gtcagcataa       600
     ccttgtcttc ttcttcagtt tttctattgt tgttccgttt ttttttttgt ttgacagacg       660
     taggtggaat ggctctactg tattgtggtt ctggacgacc tacagttttt gcgacctaca       720
     gtataagtag agggccatcg gtttgtcagg gtttcggatt gctcggatat ccgtcagtgg       780
     tgtagaacta ccgaacggtc ccagttcatc cgatgactca ttgtactgat tgttgattgt       840
     taataatatc accagagtca gtgggggaca cactcctatt agacgaatgt tgcatggttt       900
     ccgaattttg tggatacaga gtagatatat cgatcgttaa aagttaataa tcgagagtag       960
     aaaagaaaat catatattag taaaattagg ataggatgtc attggattgg agttttgacg      1020
     agattgatca aaacgaccat tccgatatta tctgttgtat ttgcgtaaga caggtagaat      1080
     atcggacaca gcttttaaga acaagttgta accacgtatt tcatttagtt tgttttaata      1140
     cgagaagagg tgaaaagacc gtgtgcccgg cgtgcaacaa gcccctacaa tcatccgctc      1200
     ctagcttagc tgaggaatta gccgtagcgc aggcgtccgc ctcgaacgta gagtcttctc      1260
     agcttcgaat gagaaccaga tcacagcgtg tgacagcagg tccagctgcg aatactgaaa      1320
     atttaccttc cgttggtcca actgaagtcg gtgtaccaat catgccagtt cagagtagcg      1380
     agccagcgaa tgaagcaagc ccaggcttgg cgcaaatggc acaggcgttg acggacgcta      1440
     tgggtcaaat cgggttgttg tctcaagcca tgactcaaat gactcagact atggaaatag      1500
     gattccaacg tttggcaagt ccaacggtac agccgccgaa tgaccaagct gctggatctt      1560
     cacagcctag tggagaaaat caaaccttcg aacagttgtt ccaaatacca actcgagaat      1620
     ccgtaggtgc cccgataaat caggctaatg attctaatgt ctcggtaacc ccatggggat      1680
     cccaacagat agcgggacta cgaccagata ggattggaca aataatcgca ggatggaagg      1740
     tgcggttttc cggaaattcg tccatgtcgg tggaagattt catatatcgg atagaagcgc      1800
     taaccaagca gaccttagag ggtaatctcg atctagtggc cagaaacgcc atttatttat      1860
     ttgaagccag tgcgagcgag tggttttggc gttaccataa aagcgtacca tccgtgacct      1920
     ggccgcagct aagtacagcc ttaaaaactc gatttagaga tgggcgtacc gatctggaaa      1980
     ttcgtacggc aatagtgcaa cgaaagcaga agccgcacga actatttgat acattttacg      2040
     aagccattgt aaccttgtcc gacaaactag tcaaccccat gtccgaaatg tcgctgttgg      2100
     aagtgctaaa gtcgaatctc ttggccgata tccaacatga aattttatac attcccattc      2160
     tgtcagtagc acaattgcgc aacatagtgc gtactcgcga acggtttttg caatcagtgg      2220
     ctaagcctat gggcatcgct gagccgaagc gtaatcctat acgacgacag gtgcatgaaa      2280
     ttgtggtaca gacagacaag gaaggcgatg aggtcgatga aacagaacag ctagatatcg      2340
     ctgcagtaac cctttcctgt tggaactgtg gttgtcaggg gcatcggtat caagactgtg      2400
     taggtgatcg caccgtcttt tgttacggct gtggcaaacg ggatacgtat aaaccgtcgt      2460
     gctctaggtg caacgatcca aaaaactcgt caagccgtgc acaatcgaca ggtgcacgca      2520
     aaccaaacag ttcgaaagca acgaacacca tttaatggac gtttcgacag ttccattact      2580
     ccctgactta aaaaaactcc cagacattcc ttcacccact tgtattttac ccccaagtga      2640
     ggaccgaatt ccattaccga ctcgatctcg aaagcgattg ctccaatatc ggcaaactgt      2700
     caaaccgagc gctctaacgt attggcgtca gtcgttaata cgtctaagga ctggcgaccc      2760
     tatgcggaag tcaccgtact gggaaggacg ctcagtggac tgatggacac cggtgcatcc      2820
     ataagttgca taggtgggaa gttcgcggcc gacctggttc agaatccgaa ccagatcaag      2880
     cctgtgagag cagcagtacg tacggcgcat gggcagagcc agccaataat tggcaaggtc      2940
     accaccgaag tgggttttca aggccagaag aaagtcttga aattgtttgt agtcccatcc      3000
     ttggcgcaag acctatatct aggcatagac ttttggtctc gttttaattt gttacctgct      3060
     tttctagcca ataaatcatc cagtccagag gtgtcaagct tagcatttga tagtacgtta      3120
     catgtgtgtt tgtcgacgca tcagcaagct cagttagcag agacggttaa cttgtttccc      3180
     tcctttgcga agcaaggtct gggaaaaacg ggctggttgt cgcacgatat tgaagtgggc      3240
     agcggaaagg caataaagca acgacattat gctgtgtctc cagccgttga aaagctaatg      3300
     tacgtagagg tagaccgaat gttagctctt ggagtaatcg aagaatcaga tagcgcatgg      3360
     tcgtcacccg tggtcctcgt tcgtaaaccg ggaaaggtgc gattatgcat cgacagtcgg      3420
     aaactgaacg aagtcactgt taagaacgct tatcccatgc cattgatcga tggcattctc      3480
     agtcggcttc ctcgagctga gttcatttca agcatcgatt tgaaggatgc ctattggcaa      3540
     attccgctgg aagtaagcgc tcgtgaaaaa acggcgttta ccatcccagg gcgcccgttg      3600
     tatcagtaca cggtcatgcc ctttgggttg tgtaatgcac cccaaacgat gtccaagttg      3660
     atggataaag tgataccgcc atccctacga aatgagatat ttatttatct agacgatttg      3720
     ttggtgatct ctgaatcctt tgagcagcat attcaagtcc tcaatgtcct gtctgcccga      3780
     ttacgcgaag ctggtctgac cataaacgtg gagaagtcca aattttgcct aaaggagatc      3840
     aaatacctag gacatattat aggcaacgga acgatccaga cagatgttga gaaggtccaa      3900
     gcgattcaag agtttccggt cccccgatcc gtgaaacaag tccgtaggtt cttaggtctc      3960
     actggttggt accacaaatt cataaaaaat tatgcgggta tcgcagcacc aatctcagat      4020
     acacttaaga gcaagcgaaa atttgaatgg accgatgaag cacagaacgc gttcgattcc      4080
     ttaaaatcac agatgtgtaa cgctcctgtg ttgcacagtc ccgattttac cattcctttt      4140
     tcaatccatt gtgatgcgag tcacacagga gtgggtggtg ttctgatgca atcagatgaa      4200
     gatggcaacg aggtacccat cgcttttatg tcacgcaaat tgaaccaatg tcaacgtaat      4260
     tattccgtaa ccgaaaaaga gtgtttggca gcggtcatgt gcgtcaagaa atttagagcg      4320
     tatgtagaag ggcatcagtt ttccattatt accgatcatg cctcattaaa atggctgatg      4380
     tcacaggctg acctaaactc gagactagct cgatgggccc tgaaactgca aggcttcacc      4440
     tttaagattt ttcatagaaa gggtagtcag aacatcgttc cggatgcctt atcacgagtg      4500
     cataccgaag acttatcgta tattggcatt gatagcctag tggaccttca atcggaagcg      4560
     tttaaatcca ctgactatca ggaactcatt gcgaaaattc aagctaatcc agatcgttta      4620
     cctgatgtaa aagtaatgga taaccttctg tatcgtcgag ctgaacacgc cactggtgag      4680
     caaattagtg acgacatgtg ctggaaactg tgggttccca gagctctggt gacagaagtg      4740
     cttaaacaag gccacgaaca tcccttagct tctcacagtg ggatcaataa gacgctagaa      4800
     cgagttcgac gcttctatta ttggccaaat ttagcgggcg atgtaaaagc ttttatcaac      4860
     aattgcgaag tgtgcaaatg ttgtaagcac cccaatcgtc ctctacgtcc tccaatgggc      4920
     aaagcaggag agacctttcg gctatttcag aaactttacg tcgattttct aggtccgtac      4980
     ccccgaagtc gatctggaaa tataggcatt tttgtagtac tcgatcattt ttctaaattt      5040
     cctttcctaa aagtggtaaa gaaatttacg gcggatgccg taattaggtt catggaggaa      5100
     gacctgtttc attgctttgg agtcccggaa gtgatagtgt cagataacgg tgttcaattc      5160
     aagtcacaca agtttaatga tctgttagcg aaataccaaa ttcgacattc gtacaccgcc      5220
     gcctacgctc cccaaaccaa tgcctcagag cgggtaaatc gctcagtact cgctgctatc      5280
     aaagcgtaca ttaagcccga tcaatccaat tgggatgagc agattagctt cattacttgt      5340
     gcgttacggt ccagtgtgca tgcagccgta aaaagtagcc catatcgtgt tgcttttggc      5400
     caaaacatga ttactggcgg ttccacttat caactcctac gaaacctcag tatgttggag      5460
     gaccgaactg tggtatttga tcgcgacgat tccttcgagc taattcgcaa gaccgctgca      5520
     gaagcaaaga aacagcagca tgttcgaaac gaaaatatct ataatcttcg aagccgagaa      5580
     gtaaactttc aagtgggtca agaagtttat agacgaaatt ttgatcagag tagttttgtg      5640
     aaaggcttta atgcgaaact ggcacctacg tttcggaaag cccgcattaa gaaaagactc      5700
     gggaacagct actatgagct ggaagatttc cagggtcgct ttataggtaa atatcacgca      5760
     aaagatatta aacaataaat cgtatcaagc actccaagtg tggatcacgc tttggttagc      5820
     aagaccccaa agtgtgattt cagcgggggg g                                     5851
//
ID   Gypsy-3_DPer-LTR repbase;    DNA;    INV; 2254 BP.
XX
AC   super_615;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DPer_;
KW   Gypsy-3_DPer-LTR; Gypsy-3_DPer-I.
XX
NM   Gypsy-3_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2254
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_615; Positions       5    2258.
XX
SQ   Sequence 2254 BP; 624 A; 531 C; 458 G; 641 T; 0 other;
     tgtaatattc gacgcttgtc gtgccgttta tttgaattat gaacggctaa ctcccaaaat        60
     tacagcctaa gactaggcag aaaaaaaaaa aaattcgagt tgcagagctt gtgagcttta       120
     accatacata gagtatcagc tgttttgcga ccaagtggca acactaagat atgcaatttt       180
     tctgctttgc actatatttc attaaatatt gctgtggctg gattctgtat aacagaaaaa       240
     gaccatagaa ggtgtggaaa aaacgtgggt tgctgtacct agtagtccca gcctctgtct       300
     tttttacctc gtggccgtca gagtgaccgg cagtgaaaaa agaagtctgc ttgagctgac       360
     ccagttctct aaacaaggtc aagcccaaag tcaaagccga gtgcaagtgc caagtgcggc       420
     tcaaagtgat cattgaattt gagtggacgc gccagttata tatcgccaat actggggcag       480
     ccgttcgacc atttggaaac gagcgccccc agtgtatcaa catttttcga aacagtggtg       540
     caattctgtt gaggtaatta tccacccagc tgcagcgacc cgttgaaaaa tgttctgttc       600
     tttccgtgta ggattagcac cactagtatc tacgtattga aacgctggtc tagaagatac       660
     ggattggtta ttcccggaga cctcttggcc acgtgcccgt accaccgttc ggtagccgag       720
     ggcatggact tgcgcctcaa gtaaacccga tcggtgtgct ctgcaatctt cgcctggaca       780
     agttcgaccc atggggatga gctgagtgac tcttcaaata aaccagtccc ccccacgagc       840
     aatccagtgt gcgagtgtac ctaacctcac gccgcagatg gaccgcggtc attgacccct       900
     ggcatcggaa gcagctgatg ttacctgcgc ccgttacaat cgtgtgccac cttcagacct       960
     cgagtaggaa ctcggtctcc agccgggaag catcgaaccc gcatcggatt tagttatatt      1020
     ttctatcttt ctttcgaaat tagacccgat atgcgaaacc ctgttttgtt atccgctttc      1080
     tgtttaacaa tgttcttttt atacggcaaa aatgtgcaaa agccaagtaa atactgtata      1140
     aaccaaaagg gaattcctgt ccatgggcta agtcgaactt gaacaaatga gtagtgtatt      1200
     aataccgatt atttttacag tttttgattt tggttgccac gcattcatct catcatctat      1260
     gcagatactc atcacaatca cacacatcat catactcatc cacccatcaa atcacctcat      1320
     ccaacacaca acgaaagatc tttctgcgtg ggagtcaaag ttattaatcg tttcgtaagt      1380
     gattataaga aagaaaaaaa aaaacaagta agccatctga aaagaatgaa tgtgcggtaa      1440
     ctattcgttg gtcttcaacc aggatcacgg ttttatacac gtattactca tgcctttaaa      1500
     cgactttcca tatacccgat ttttgtctgg ttttggcact gaccaagtta ccgtaatgac      1560
     atatgacgtt tccttgttcc tatgatgaac acgtacctat ttcttgcctt tatctatacc      1620
     tactactaat catttttata gatttaagaa ccttatcccc tacctcgccc ctatgatact      1680
     cttaatacta gtaataccct ataaatgtaa gacgataccg actagcaggc ttatattagg      1740
     gactagatcc tattagcgtt aggtttgata ggagtttaaa tgaagaatta tggattgttt      1800
     aaataaagta gttttggaaa tgaaccgtgg ctaaatagat tatattggaa ccatgcaacc      1860
     tcgaaaaacg gagatgtgac ccaccgcagt ctttgttgga gggatcctga cgattaatag      1920
     gtggccctga aggatcatgg tagggtgggc gttctcgcca atgggcgata ccgcagccga      1980
     caaagatctg accggtgatc ttcttcgttc acgtgtacat gctgatctgt ccctttgacc      2040
     cccctgtatc ccgtttccta gtatcctttc cctactcgta cgcgattttt tttataaatt      2100
     cttatctcga ccatttgcca gagctataaa tgggcagtaa aatttcctcc atgcccacac      2160
     cccgccgacc agagacaaaa gccgaagcca gcgcgtactt cctactcccg tttacttatc      2220
     atcagctcct ctaacctgta cgttgtatgc taca                                  2254
//
ID   Gypsy-3_DRh-I repbase;    DNA;    INV; 6096 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DRh_;
KW   Gypsy-3_DRh-LTR; Gypsy-3_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6096
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1561-1561 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1619..2572
FT                 /product="Gypsy-3_DRh-I_1p"
FT                 /translation="MATRATQRARNWHFEDRRASDFREEPRLYANTGPGGG
FT                 SQQVRIERWGVSFDGEDERNSVEDFLFRLEFLQRQYQCPWQEVLRHFHVLL
FT                 TGRAREWYWVHVRHCRVERWPQLRAALMDRFRGHQTEHDRMHQLLQREQQP
FT                 GEAVEDYVHAMQQLASRLKKPLSERQMVKIIKKGLREGIARFVYAMDVMTV
FT                 DELREECCEVERNFGRRGRAAYAHPMRYPPAEKARVSEAAGPDTAEDSQWQ
FT                 VEALQAKARNPFRAGCWNCGAVDHGFRDCAATERRLFCYRCGRPDTVSPRC
FT                 PDCAENGRLGDPRAGRMRPDKSPAKQ"
FT   CDS           3656..5449
FT                 /product="Gypsy-3_DRh-I_2p"
FT                 /translation="MSPAKQKVVEDEVDKMLALGVIEESKSPWSNRTTVVS
FT                 RPGKDRFCLDARKLNDLTVKDAYPLPSIDGILSRIDQTFYISSVDLKFAFW
FT                 QIELDPKSKELTAFTVPGRPLYQFRVMPFGLCNAAQRLVRLMDRVIPAEIR
FT                 SNVFVYLDDLLILAPDIQTHFRYLRRVAECLKAAGLTIGMSKSKFCFKSLT
FT                 YLGFIVGGGRLRMDPGRVAAIRRMPEPRTMKEVRAFLGTAGWYRRFIKNFA
FT                 TLAAPLTESLKKTGNSKFSLSPEAQLAVESLKMALTTAPVLVHADFKRRFF
FT                 IQCDASHVGVGAVLFQRDDDGQEQPIAFFSAKMNKHQVNYTVTEKECLAAL
FT                 MAIRKFRPYVEGMPFTCITDHASLKWLMSMKDLSGRLARWSLQLQGFHFNI
FT                 EHRKGSENVVADTLSRCVEELVVNPTDLLGFETTEFAGEDYLELVKDVESN
FT                 LENLPDLKIEDGLIFKRVSSANLDDEVEGSEWKLWIPQSLTHSLIERAHTD
FT                 PTAAHGGMGKTLEILRRQFYWPGMVLQVREFVRGCDVCKESKAPNFRMQVG
FT                 IGERVQTEQPFQKLYIDFLGKYPRSKKGHAWIFIVVDHFSKYAFLKAMKEA
FT                 "
XX
SQ   Sequence 6096 BP; 1499 A; 1421 C; 1810 G; 1360 T; 6 other;
     tagtggcgcc caaagtaaaa aaataaatcg tcgagacgac gacgtctcgc atatagggat        60
     ttgcctcgca tagcctccgc accggtgact tgcagggcaa cagcaggttg catgcaactg       120
     caccgggagt ggtgggctgc gaggcagagc gaaaggttta gagggaattt tcaggaggct       180
     tgactccgac tggagacaat ggctcctggt cacagatcac aggaccggtg gtgacctgcg       240
     ggtggcatct tggcccagaa gggaaaagat ttgcatccgc agattgcgat aaatctgtga       300
     taaaaactgt gataaaatat gttagggcgt aggtttttag ttttatttat ttatttatat       360
     tttgtgtttg tggggtagag tcgttgtatt gtgtcagtag gttttttttg ttgatcctga       420
     ggcttttgtt tctcggatgt gtttgatatc ttctgtcggt tggatgctta aatgtgtgtt       480
     cgtgacccgt gacttacacg cgctgcacga aaccaccagc caagtcctta accggcggct       540
     atcaccacga gtgatagcca gttcagttga cgagcggcta ggatgtgacg ggaaaaattg       600
     ggttttggag aaagcgcagg acgagttagg tcggaagtcc accggcgagg gtcagttcca       660
     tctccccatg tccaaaaaaa tctcaaaaga atcaaatcaa aaaaggaaga atcataaata       720
     tattatttat ttatctattt attatttatt ctatttattt acttacatta tttatttatt       780
     ttcccaagta tttatttatt tacaaaaaat ttatcaattt tttcctaaaa ttacatttat       840
     ttatttcgaa catttattta tttatttaaa attttgtttc tatatttatt atccgttatt       900
     acatgtttat atatttatct gtttatttat tatttgctag tccttatttt aatatttatt       960
     attcttctta agtatttatt tcttgtggtg atttgtttag ggtaggatat aggaattctt      1020
     agggagatag atatattttt gttttgttgt tcgtgcgata caaagatgcc ttccaattac      1080
     gatctccgat cgaaggttct tccggccgag gaagaggaga aattgtggtc caccgattta      1140
     gatgaggttg ccggggccga acagccacgt atatcgatgg gactgccaag gactccgttg      1200
     ggtcgtcttc atcaggagct gcgcagggaa cttcaggtgg gaacagatgt ggcattggcc      1260
     caggcggcag agacccatcg aaaggctcag gagtccggcg tcagccagtc cttaagggat      1320
     gaaatccgag gtggcttcct ggaaatgatg aagctgatga acgaggtgtt aaggcctgct      1380
     gctcagcggc cgcagcttcc acaggggaac cataccgatc agcagcagca tccgggttgg      1440
     acggacacgg cggcaccaca ggctccaagt ctggtccaga aaggggcgat tccgaagact      1500
     gcaccatcag caggcacgat tggctcccgt ccaccgccac caagggttcc accaaagccg      1560
     cctagaaggc ccgtggagtc gttaccggtg gagagcagca gtccaggata tcctctggat      1620
     ggcgacgagg gcgacgcaac gagctcgaaa ttggcacttc gaggaccgga gggcttccga      1680
     tttccgcgag gagccgcgtt tatatgccaa tacagggcca ggtggcggca gccaacaggt      1740
     tcgcatcgag cggtggggcg tttcttttga tggcgaggac gagcgaaact cggtggagga      1800
     tttcctgttc cggctcgagt tcctgcagcg gcagtaccag tgcccttggc aggaagtgct      1860
     ccgccatttc catgtgctgc taaccggacg ggcacgcgag tggtattggg tccacgtgcg      1920
     tcactgcagg gtggagagat ggccacagct gcgtgccgcg ctgatggata ggttccgagg      1980
     ccaccagacg gagcacgacc ggatgcatca gcttctgcag agggagcagc agccgggaga      2040
     agccgtggag gactatgtcc atgcgatgca gcagctagcc tctcgcctaa aaaaaccact      2100
     gtcagagcga cagatggtaa aaataattaa aaagggcttg agagagggta tcgcaagatt      2160
     cgtttacgca atggatgtga tgactgtgga cgagttgagg gaagagtgct gcgaggtgga      2220
     gcgcaatttt ggacgacgag gacgcgcggc ctatgcgcac ccgatgcgtt atcctccggc      2280
     ggagaaggcc agggttagcg aggcagctgg tccagatact gcagaggatt cccagtggca      2340
     ggtggaggcg ttacaagcga aggcccgaaa tccgttccga gcgggctgct ggaattgcgg      2400
     agccgtagac cacgggttcc gtgactgcgc ggcaacagaa cggcgcctgt tctgctaccg      2460
     atgcggaagg ccagacaccg tgtctccgag atgtccggat tgcgcggaaa acggtcggct      2520
     gggcgatccg agggcgggaa ggatgcgtcc agacaagagt cccgcgaagc agtaaatgtt      2580
     ctaggactaa aaaaaggttt agtatgtacg agtagtaata agaacaattt aaaatactta      2640
     ccttatgagg aaaggatgcg caggtacttg gaggccagga atcggatctt ctccgaccac      2700
     caattgagcg ggatgagatt ggtgtctcgg aaagtccaga aggccaggga tcgattccgg      2760
     aagagacgag cgaggaggcg agaagtggtt gccgctgtga agcgcagtgg aacgggagac      2820
     cctcgaccat tcgctgaagt ccggatcctg acccaacagc tgactggatt gttggacacg      2880
     ggagcgagtg tcagcctgct gggcaaaggt ggcagggagc tggtcgaggc gttggatgtg      2940
     ccagtccaga agtacctatc cgtggtccga acggcgtctg gagaggaccg ctcgattata      3000
     ggacgcgtcg agctacctgt ggagtacaga ggacagataa agcggatcct gttctatgta      3060
     tgcccttacc tggagcagga agcctatttt ggagtggact tctggcaggc gtttggcttg      3120
     gctccggcgg tgataggcca cagcgacccg gaaagcgtga agaaggcaga cgaaatccac      3180
     gctagggata tggagcacta cgccgaacag gaagatgacg acgaggaaaa gccggatccc      3240
     gaatcctgga ccttatccga ggccgacgca cgacagctcg cggagatcca ggaggtgttt      3300
     ctcacatttg agaaggatgg tctgggaacg accaatctgg aaagcacacg atcgagctga      3360
     ttgagggagc caaggtcttc aaggatcggc cgtatcccat gtctccagcc aagcagaagg      3420
     tagtcgagga tgaggtggac aagatgctag cgctcggagt catcgaggag agcaagagcc      3480
     cgtggagcaa ccggacgacg gtagtgtcga gacctgggaa agatcggttc tgcttagacg      3540
     cccgcaaatt gaacgatctg accgtcaaag acgcttaccc gctgcctagt atcgacggaa      3600
     tcctgtccag aatcgaccaa acgttttaca tttccagcgt ggatttgaag ttcgcattct      3660
     ggcagatcga gttggacccg aaaagcaagg aactgacggc ctttacggtt cctggtcggc      3720
     ctctctacca gttccgggtg atgcccttcg gactctgcaa cgcggcgcag cggttggtga      3780
     gactcatgga ccgagtgatc ccagctgaga tccgttccaa cgtctttgtc tacctagatg      3840
     atctgctgat actggctcca gatatccaga cccatttcag gtaccttcgg cgagtcgcag      3900
     aatgcctgaa agcagcgggg ttaaccatcg gtatgagtaa gtcaaagttt tgcttcaaat      3960
     cgttgaccta cctgggtttt atcgttggtg gaggtcgtct acggatggat ccaggacgag      4020
     tagcagcgat caggaggatg ccagagccta ggacgatgaa ggaggtgaga gcgtttcttg      4080
     ggactgctgg atggtaccgc cggttcataa agaacttcgc gacgttggcc gccccgctca      4140
     ctgaatcgct gaagaaaact ggaaactcga agttttcatt gagtccagag gcccagcttg      4200
     ctgtagagtc cttgaagatg gcgttaacga ctgcaccagt cctggtgcat gcggacttca      4260
     agagacgctt ctttattcag tgcgatgcgt cacacgtcgg agtcggggcg gtgcttttcc      4320
     agcgagacga cgacggacaa gagcagccaa ttgccttttt ctcggccaag atgaataaac      4380
     atcaggtaaa ttacaccgtg accgagaaag agtgtctcgc ggcgctcatg gccattcgga      4440
     agttccggcc atatgtcgaa gggatgccat tcacctgcat cacggaccat gccagcttga      4500
     agtggctcat gtccatgaag gatctgtcgg gacggttggc gaggtggtca ctgcagcttc      4560
     aaggattcca cttcaacatc gagcaccgaa aaggaagcga gaacgtcgtg gcagacaccc      4620
     tttcacggtg tgtggaggag ctcgtagtga atccgacgga tttgttgggt ttcgaaacca      4680
     ccgagttcgc tggagaagat tacctcgagt tagtgaagga tgtggagagt aacttggaaa      4740
     acttaccgga cttgaagatc gaggatggcc tcatcttcaa gagagtctct tcggcaaatc      4800
     tggacgatga ggtggaaggt tccgagtgga aactgtggat cccacagagt ctgacccaca      4860
     gcctaatcga gcgtgcgcat acggacccaa cagcagctca tggcggaatg ggaaagactc      4920
     tggaaatcct ccgacggcag ttctactggc caggcatggt tctccaagtc cgcgagttcg      4980
     tgcgcggatg tgatgtctgc aaggagtcca aggcgccgaa tttccggatg caggttggta      5040
     ttggggaaag agtccagacg gagcagccat tccagaaact gtacatcgat ttcctgggaa      5100
     aatatccgag gtcgaagaag ggccacgcat ggatcttcat cgtggtggac catttctcga      5160
     agtacgcgtt cctgaaggcc atgaaggaag ccwcggcckc sagcgtggtc gatttcctca      5220
     tccacgaggt attctacaag ttcggggtcc cggaaatcat acactcggac aacggtcggc      5280
     agtttacgtc aaagatcttc gtggaggcga tggagagttt cggtatctcc cacatcaaga      5340
     ctccggtata ctccccgcag agcaacgccg cagaacgagt taatcgaagc gtgctggccg      5400
     caatccggag ctwtttggag ggagaccatc gggaatggga cgcgtacctc ccggagatcg      5460
     aggtggccct tcgcaacgcg atacactcag cgacaggaga agcgcccttc ttcacggttt      5520
     tcggacatca catgttcctg aacggcgcca gctacaggtt agcgaggaag ctgaagtcct      5580
     tgtgcgacca cgagatggcg gggatgggga cggcggacaa gctccgagtg atccaggama      5640
     aggtccggaa gaatctggag acagcgtacg agcgaagccg ccagcggtac gaccagcggg      5700
     ctcggaastt cctggccaag ccaggtcagg aggtataccg ccgcaacttc gtcctcagcg      5760
     acttcggaag tgccttcaac gcgaagttcg ctaggaagtt ccttaaggct cgggtggtga      5820
     aagccgtcgg caacaatgcc tacgagctgg aagacctgca aggacgccgc ctcggagttg      5880
     taccacgcca aggacatccg ggtgtaacct gaaaaaaagg cagcacaaat taaaggagcg      5940
     caaaaaaaaa cgaaggcagt acttcccggc aagcgtgggc cccgcgtagg gcaccgtttg      6000
     gaactgcatt cggatttcgc caggcaccga tccccaatgc tcccaatgat ttcgtcgagt      6060
     ggccacggtt cggaggcgtc tctctaaatc cttggg                                6096
//
ID   Gypsy-3_DRh-LTR repbase;    DNA;    INV; 1756 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DRh_;
KW   Gypsy-3_DRh-I; Gypsy-3_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1756
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1562-1562 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1756 BP; 442 A; 356 C; 453 G; 505 T; 0 other;
     tggtgttgca tttcgagttg gaatcggctg gaggaattaa gaaggaggta ttcgtttttg        60
     gtagggctat cgataaagta ggagggtggc aacccctact ggagtggcgc ccccttctgc       120
     tgatgtcttg gctatctagc tatttaaact agcccggttc gctctgggta tggctaggat       180
     ggccttgata tgtccaatga cccaatttcg agagaggcga agggaatatg gcgagatata       240
     ggcatgatag gcaaattttt atatagtcgc agccatattg tcccagcaga cagaacaaaa       300
     aagttaaagt agtgtttgtg ccgaaatata aaaaaagtga gtgttagaaa aatttgtgtt       360
     aggtttaata gtttatttta tttataaata attattcgta gggcaaccgg ggtcccaata       420
     caaagggccc cgggatattt aaattggagg aatttaaatt ggaagttcaa attggaagac       480
     ttaattggac atataaattg gactaattgg aaattcaaat tggaattcaa attggaggga       540
     attaaatctg gaaaatcaaa ttggaaataa atcgggattt taaattggag gaaattaaat       600
     cgggaaaatc aggaaaatac gcaccttcgt tcgacccagc tacgagatct ggacaccata       660
     actcgccttc ctcggacgcc gccaacgctt tctaacatac gccggtgagt ccgttccggg       720
     ctgttaagac ccacctgctt tggggtcgtc ggctgccagt tcgcgcggcg ttgagaggca       780
     ccgccatcat cctcgccttc gccaccgttc ctcggggtgt tccaggccct tattgctgct       840
     ggcctccggc agagtacgct gtagtcgggg catagttagc ccggcgccta gcccagaagt       900
     ggctgaaatt attaacgtta atttaactgt gcacattact aaatttatgt acttacctgt       960
     tgacctgtaa atttatccgg acttagaccc gaaaacctca attcttgtcc tcgttgttgc      1020
     ctgtaaaaaa gggtcgcgat tattagtttt cggcgggatt gtttacagcg cgtaatactt      1080
     accgtttggc ctgtcccttc ttttccctag gagctcctca ggattaggtg acccgacaca      1140
     tacctagtgt gtgccctttt ttgcgcctcg ttccactgcg agttccacca atacgtgtct      1200
     ggtggaacat tatttccgcg gcgcctgtag cctttgccaa aggaaggtaa tcttccgctt      1260
     tgaccgcgta aatttgtaga cggtggccaa gtttggtcgt aaaggctaag aaaggatgaa      1320
     ttaattacta ggagagcaag ttatgttaac tttagtactt actgtggata ttaaatgtac      1380
     atgaagactg aaatgtgcga gtgagttgtc gctgtggggg agatggagct gtcctagtcg      1440
     cgaggagtga cttcgaccag ctgattatgg gtgatgcctc cgcagaatcc tccggggcat      1500
     ccttggttgg gtgggcgtgc ttggctaggt caccaatagc caccaaaaca ccatatattt      1560
     cccgtcactt ctaattgttt gcattgttta cattttggtt tgttttgttt gttagtgatg      1620
     agcgatagtt tttgtgaagt gagacgcgcg tacatcgatg tttatgttgt ggaactgtag      1680
     ggacattggg gatactccgc cctggggatt cgggagctag ccggcgccgt cccaggacaa      1740
     atgcagttcc ataaca                                                      1756
//
ID   Gypsy-3_DSe-I repbase;    DNA;    INV; 7373 BP.
XX
AC   AAKO01005340;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DSe_;
KW   Gypsy-3_DSe-LTR; Gypsy-3_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7373
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01005340; Positions   11755    4383.
XX
CC   Positions [5172-5432] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1322..2332
FT                 /product="Gypsy-3_DSe-I_3p"
FT                 /translation="MEEIKETLNALLAQMTGLKDDMKKMNNRMNTFEAENE
FT                 ARNPVVTPPVPLARARNEYELKEVSTLPDCVKELQTFEGQPERYVSWVNRA
FT                 QAILDDYEVIRGRPLFRAIVCHLRQKIRGEAEEVLDSYGVLDDDWPEIKRV
FT                 LAMQYADKRDVRTLEYQLSQLNQGNKPLEEYYSEVTKHLSLILNGLKAEGH
FT                 SIEGVRALSEHSRQQALDVFIRGVGNDASRLLVMRRPKDLQEAYFFCKELQ
FT                 AVGPREGSFVRSPPPNFTPNTRFYRPPSGPRFASSYQGNVRPSIGSGYGGS
FT                 QNSNRFQGPRPAIKMESNRSGQSHRSDYRVPQSGGSGVKRTSYEY"
FT   CDS           3109..5310
FT                 /product="Gypsy-3_DSe-I_1p"
FT                 /translation="MRSEVDRQIGELLSEGIMRPSRSPYNSPVWIVPKKAK
FT                 PDGEKQWRLVIDFKRLNAVTISDTYPIPDINSTLASLGGARYFTTLDLTSG
FT                 FHQIHMKPSDTVKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDVLREHI
FT                 GKICYVYIDDIIVFSNDYDSHWKNLRLVFESLKKARLQVNLSKTQFLSTQV
FT                 EFLGYIVSHDGIRADKKKVEAITKIKPPRNVKELKSFLGMTSYYRKFIRDY
FT                 AKVAKPLTNLTRGESARVKANQSKKVPVELDDAALQAFDGLKTILSSSEVL
FT                 AFPDFGKPFHLTTDASNYALGAVLSQDTEGKDRPIAYISRTLSETEENYAT
FT                 IEKEMLAIVWALDNLRSYLYGAASVKVYTDHQPLTFALGSRNFNAKLKRWK
FT                 ARIEEYNCVLIYKPGKSNVVADALSRIVPINHYFDWCHSDTASATEGGSTV
FT                 HSADEDASHLLPHVEVPINVYRNQLVFDSERSEYLCEQPHRGFERHLIPVG
FT                 TGLLSELVVTLAKYLKPSVINGVKIPETYLPSFQRLCLANFAAFKIRITQR
FT                 LVVDLSDPEEICEAIELEHRRAHRGAKEVRLQLLEKYYFPQMASTIRRQLS
FT                 SCECCKLYKYERHPNRPFLQPTPIPKYPCEILHIDIFTLEKKIYLSCIDKF
FT                 TKFAKLFLLESKSSIHLREKLVEALHYFTVPRILVSDNERGLLCPTVLNYL
FT                 RTLGIGFTIPRPRKARSMVKSRGFIPPSSRFTDA"
FT   CDS           5923..7335
FT                 /product="Gypsy-3_DSe-I_2p"
FT                 /translation="MVGAADVFKYEAPLIPLQEGTVWRVNGHFKLAHVIDL
FT                 RRFESLVQETRREAKQLTDPRIAALVAHYLEEAQEGLSRLTGTRRGRRSLD
FT                 WIGSAWKWIAGSPDASDWDAILHAQENIVKSADQQVRINAGLFDASHDSLR
FT                 QLNEVIARVNAIDGDIHTATTLLHKALIINSQVAELTQACQLAKSGIVNSR
FT                 LLDHEEVQAILTEVRNLPYQNAVEALEFSRPSVLTNGTTLLYILAMPKVAP
FT                 KEYRLLLLLPATIEGKQVMLRHDQVAVSTEETYAVVNDCLSIGNTTVCPEK
FT                 SLLKMDENSCVPKLLKGGQARCEFLRSSEARVELVEDGMMFLSNFNGTLEA
FT                 GPNTHNLNGTYIVEFANETISVAGRTYTSYSSSHFMVMPAILTTVTATGYA
FT                 PSLHYVNDFNMENLRRLSGMSEKVSFSFLLEALVVLIVGALLYTIWRKLTS
FT                 TKGIPVMANSASGPETLGAGGAPKAQ"
XX
SQ   Sequence 7373 BP; 2163 A; 1790 C; 1705 G; 1715 T; 0 other;
     agactgcaga agtcagtctt ggactaaccc ccgaaaccat tatctggaga gctgcggcta        60
     attattaaat taacttgtaa acccacatac ttgagttgaa ttgaataaat ctgtaacgta       120
     aaacgaagct gctcgctgtt ttcttcgttc aaccccgaga atcacaggaa tgcttggaat       180
     attgactagg tgagctgtgc ggctacgaga gccggagtgg aaaagcgagg agtagactcg       240
     cttaactggc gcccgaacag tcagaattct gactaccggc aatggttact taacgcaata       300
     aaatttataa aaatgaaaat tatagaaatg aagaaaaaaa caaaaaaatg gaaaaagtga       360
     accaaaaatt ataaaaatga aaaaaaaaaa aaggaaaaaa acaaaaaaag gaaaaagtga       420
     accacgaaat gtggtaaaac aagataacga caagtgacga atggcagtga tgtgatagtg       480
     aaaccttgaa agtaaaaaaa acgaccaccc gccgcggtga gaatgccgct acaacctgta       540
     acgggagaaa cattctgtac gggcgcaaaa agtcgtatgt aacaaaacaa aagaccaccc       600
     gccgcagcgt taacgccgtc tccgtccagg agcggggcat atttaacgcg ggcgcaaagt       660
     gtctacctca aatattagaa aatgacctat gtaacaaccc actgcggcga tctgtctaca       720
     gcccctgtag cccattcgcg agtgcaaaag ttcatagcgt caaactgata cctaaatgaa       780
     acaagaagaa taacttcgtc aataataaaa taacccgtga attgtgatta aagcgtgtgg       840
     taatctgctg gataggctga gcggtgtgga ggcacccgaa aaagctgccc agtaaattgt       900
     gtggcaaccg taccttagta ggccaaggcc aaaaagggaa aatacggacc accgtgccca       960
     gtgctaggct tcactcgtcc gtcactaccg taatacaata caaagaaaaa ttatgaatac      1020
     aaatgctgac ataaaaaata ttaaacacca taccttaaac cattgcctat tacaaaaaat      1080
     taaaaaagat ctctttttct ccctccagat actaagaaag acacgacaca cacattttcc      1140
     caacacactc acacgaggac caacacaaat tgtcaagggt gagtgaaact acacttaact      1200
     atcgctgtgc cttagataag aaatataaag aaaaaaagga aaaatcttgg ttgtccgtta      1260
     caccctatcc gactcaatac attcctgtcg tttagtttgc taattgcgtt cttattaagt      1320
     aatggaagaa attaaggaaa cacttaatgc gctccttgcc caaatgaccg ggcttaagga      1380
     cgatatgaaa aaaatgaaca atcgaatgaa cactttcgaa gctgaaaacg aagctcgtaa      1440
     cccggtagtc acccctccgg tgcccttggc ccgagcacgt aacgaatacg aactgaagga      1500
     agtctctacg cttcccgact gcgtcaaaga acttcaaacg ttcgagggtc agcccgagag      1560
     atacgtctcg tgggttaatc gtgctcaagc gatcttggac gattacgagg ttatcagagg      1620
     gagaccattg ttccgtgcta tagtatgtca ccttaggcaa aagataagag gcgaagctga      1680
     agaagttctc gactcttatg gggttctgga tgacgactgg ccagaaatca aaagagtttt      1740
     agcaatgcaa tacgcggaca aacgcgatgt gcgaacgtta gagtatcagc ttagccagct      1800
     gaaccaagga aacaaaccct tggaggaata ttactcggag gtgacgaaac atctctctct      1860
     tatcctcaac ggattgaaag ccgagggaca ctcgatagaa ggagtcagag ccttgtccga      1920
     acattctcga caacaggccc ttgatgtctt cattcgagga gtcggtaacg acgcctctag      1980
     actgctggtc atgcgaagac cgaaagattt gcaggaagct tacttcttct gtaaggaact      2040
     gcaggcagtt ggtccgagag aaggctcatt cgtccgctcc cccccaccaa attttactcc      2100
     aaatacccgg ttctatcgac cgccgagtgg ccctcgcttt gcttcttcct atcagggaaa      2160
     tgttagacct tccataggtt ccggatatgg aggctcacag aatagtaatc gcttccaagg      2220
     tccaagaccg gccattaaaa tggagtcgaa ccggtcgggt cagtcccacc gttctgatta      2280
     cagggtcccc cagagcgggg gttctggggt gaaaagaacg tcgtatgaat attagaatcc      2340
     gttccaaagg gcgaccaagc tttatcatat ggagcccgtg cttgatcatc cgacaatgcc      2400
     tgccgaacat ggcgaagatc cctctaccga cccttactat aaccaagtcg gtgccgaaga      2460
     tgccggcatg gcccctccag atatcatgga ggaaagggac gactctgaaa tgggggctga      2520
     gggtccgaat tttatgaccg atgcctctcg agcgtccctt acttagaata cgaggggaaa      2580
     gatggggcta aattacaatt cttgatcgat accggcgcta acaaaaactt catcagcccc      2640
     aaaatcgccg ccggatcgac tgtcctccct actccctttt gcgttcaatc ggccacaggt      2700
     tccgttcgaa taacacgccg cgtagccgga aaatttttcg aaaaactagg aaatgactcg      2760
     accctcacct tttttgtcct ccccggttta gataccttcg atggcatcat aggggacgac      2820
     acgctcaaag acctgaaagc aatagtagac aggaaaaata attgtttagt tatatccccc      2880
     gggataaaga ttcccctcct tgctaaaagg tcccttaatg taaacacttt gttggactca      2940
     acacacccag aagaagcaag aaggatctta aaggcactga ttgacgagta ctcgcacctt      3000
     ttcgacccct tgtcgccggg cgaggccgtc gacaccagcg taagggcgga aatacgaacg      3060
     aacacttcag acccaattta taccaagagt tatccgtacc cggctaacat gagatctgaa      3120
     gtggatagac aaattgggga actcctcagc gagggtatca tgcgcccgtc gagaagccct      3180
     tacaactctc cggtgtggat agtgccgaag aaagcgaaac cagatggcga gaaacaatgg      3240
     cgtttggtca ttgacttcaa acgtctaaat gcggttacaa tttctgacac atatccaatt      3300
     ccggatataa actccacatt ggctagcctt ggcggagcca gatattttac aacactggac      3360
     cttacctcag ggtttcatca aattcacatg aaaccctccg ataccgtgaa aacggcgttc      3420
     tctaccctga acgggaagta tgaatttctc cgtcttccct tcggcttaaa aaacgccccg      3480
     gctatcttcc aacgaatgat cgacgatgtt cttcgggaac acattgggaa aatttgttac      3540
     gtgtacatcg acgatattat cgtctttagt aacgactatg atagccattg gaagaatctt      3600
     cgcttggtct ttgaaagcct aaaaaaggcc cgacttcaag tcaatctgtc taagactcaa      3660
     ttcttgtcga ctcaggtcga gttcctcggt tatatcgtca gtcatgacgg tatcagagcg      3720
     gacaagaaga aagtagaggc tataaccaaa ataaagcctc ctaggaatgt caaggaactg      3780
     aagagtttcc tcggcatgac atcgtactat aggaagttta ttcgcgatta tgctaaggtt      3840
     gctaaaccct tgactaattt gactcgcgga gaatccgctc gggttaaagc aaaccaatct      3900
     aagaaggtcc cggttgagct tgacgacgcg gctttgcagg ctttcgatgg ccttaaaacg      3960
     attttgtctt cttctgaggt gctcgccttt ccagacttcg gtaagccgtt ccatttgacc      4020
     acagacgcgt ccaactacgc tctgggagcc gtattgtccc aggacactga gggaaaagat      4080
     cgtcctatag cttacatctc gcgcaccctg tcggaaactg aggaaaacta tgccactata      4140
     gaaaaggaga tgcttgctat agtgtgggca ttggacaacc tcaggtctta cctgtatggc      4200
     gctgcatcgg ttaaggtgta taccgaccac caacctttga cctttgcgct ggggagcaga      4260
     aatttcaatg ccaaacttaa acgctggaag gctagaatag aagagtataa ttgcgtactc      4320
     atttacaagc ccggcaaatc taacgtcgtc gctgacgcct tgtcccgtat agttccgata      4380
     aaccactact ttgactggtg ccattcggat actgcgtcgg ctaccgaggg cggttccact      4440
     gtccatagtg cggatgagga cgcatctcat ttgctacccc atgtagaagt acctatcaac      4500
     gtctatcgta accaactcgt ctttgactcc gagcgttccg aatacctgtg tgaacaaccc      4560
     cacaggggct tcgaacgtca tctcatcccc gtcggtactg gtcttttgtc cgagttagtt      4620
     gttactctgg caaagtacct caaaccctca gtgatcaacg gggttaaaat acctgaaacc      4680
     tacctaccat cgttccagcg cctttgcttg gcgaattttg ctgcgttcaa aattcgcata      4740
     acgcagaggc tggtggtaga tttgtcggac cctgaggaga tctgcgaagc catcgaacta      4800
     gaacatcgca gggctcatag gggtgctaaa gaagtgcgcc tgcagctttt ggagaaatat      4860
     tatttccccc agatggctag taccatccgc aggcaactct cgtcgtgcga gtgttgcaaa      4920
     ctctacaagt acgagaggca tcccaataga cctttcctcc agccgacacc tatcccgaaa      4980
     tacccgtgtg aaattcttca catcgacatt ttcaccttag agaagaaaat ctacctaagc      5040
     tgtattgaca agtttaccaa atttgccaag cttttccttc tcgaatcaaa atcctctatt      5100
     cacctccggg aaaagctagt tgaagcacta cactacttca ccgtcccaag gatactggtc      5160
     tcagacaatg aaagaggtct tctgtgcccg acggtcttaa attatttacg taccttgggt      5220
     atcggtttta caataccccg acccagaaaa gcgaggtcaa tggtcaaatc gagaggtttc      5280
     attccacctt cctcgagatt taccgatgct tgaagagcga acaccccgac ttcaaattta      5340
     atgaactggt cgccattgca gtggataggt acaataattc tatccactca gtaaccaaca      5400
     ataagccagc tgatctattt ttcgaccgct cggctagaat aaattaccag gggttaactg      5460
     atttcagaac taggactctc gaagacgtta ggggcatgat agaataccgc caagagctcg      5520
     cgaacgcggc tcacaacaaa actaggaagg aacctgtatc atataacgtg ggagataaga      5580
     tctttgttgc caataagcaa attaaaacga aagaaaagca gcgctttaaa gctgaagaaa      5640
     ttgccgagga tagaagggta acggtgaaaa ccaagaaggg caagatattg cattaatcag      5700
     accttcgtaa ctaaaatggc accggatcgt tgagtgtgtt tcacgcgcta ccattacaaa      5760
     gtacactttt tacatttcaa aacactttac caattgacac cctttgctca gaaataatta      5820
     ttaaatccct tatctctaag ctaatataag caacaccaca aaaataatgt tactcataag      5880
     ataacctttc caaccattat tgcaagtatc attgtcaccc acatggtggg ggctgcagac      5940
     gtcttcaagt acgaggctcc gctcatcccg ctacaagagg gaaccgtttg gcgcgtcaat      6000
     ggacatttca aactggcgca tgtcatcgac ttgagaaggt tcgagtcgct ggtccaggaa      6060
     actcggcgcg aggctaagca actgacggat cccaggattg cggcgttggt ggcacattat      6120
     ctggaggaag cgcaagaggg cctatctaga ctgacgggca ctcggcgcgg acgtcgatca      6180
     ctggactgga ttgggtccgc gtggaagtgg attgcgggat cacctgatgc gtcggactgg      6240
     gacgccattc ttcacgccca ggaaaacatc gtgaaatcgg ccgaccagca ggtacggata      6300
     aacgctggat tgttcgatgc ctcacacgac tccctgaggc agctgaacga agttatcgct      6360
     agggttaacg caatcgacgg ggatattcac acggctacaa ccctattgca taaggcctta      6420
     atcatcaata gccaggtcgc cgagctgaca caggcgtgcc aactagccaa gtcagggatc      6480
     gtcaactctc gcctgttgga tcacgaagaa gtgcaggcta ttctgactga ggttaggaat      6540
     ttgccttacc aaaatgccgt ggaggcgttg gagttctcac gcccgtcggt actaactaat      6600
     ggaacgacgt tgctgtatat cttggccatg cccaaggtcg cccccaagga ataccgcttg      6660
     cttcttctcc tccctgccac gatcgaggga aagcaagtta tgctgaggca tgaccaagtc      6720
     gccgttagca ccgaggaaac atatgctgtg gtgaacgact gcctttccat aggcaacacg      6780
     actgtttgcc cggaaaaaag tctcctgaag atggacgaaa acagttgtgt ccccaaactg      6840
     ctgaagggtg gtcaggctag atgcgagttc ctcaggagta gcgaagctcg cgtggaactg      6900
     gtcgaggacg ggatgatgtt cctttctaac tttaacggga cacttgaggc tggccccaac      6960
     actcataacc taaatgggac ctacatagta gagttcgcta acgagacgat tagcgtggct      7020
     ggaagaacct atacaagtta ctcatcaagt cacttcatgg tcatgcctgc gatactgact      7080
     acggtcaccg ccaccgggta cgcgccttca cttcactatg tcaatgactt caacatggag      7140
     aacttgagga gactctctgg gatgtccgag aaggtctctt tctccttcct actggaggca      7200
     ttggtagtcc tgattgtcgg ggcgctcctc tacaccatat ggaggaagct gacatcaacc      7260
     aagggtattc ctgtcatggc aaacagtgcc tcgggcccag agacgctagg cgctggcggg      7320
     gcacctaaag cccaataatc tgcgggacgc agatcctgaa gggggaggag tta             7373
//
ID   Gypsy-3_DSe-LTR repbase;    DNA;    INV; 379 BP.
XX
AC   AAKO01005340;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DSe_;
KW   Gypsy-3_DSe-I; Gypsy-3_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-379
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01005340; Positions    4382    4004.
XX
SQ   Sequence 379 BP; 71 A; 156 C; 71 G; 81 T; 0 other;
     tgaaccctct ctgaatgtct tccctcttct cccgccccgc tacttttata tacgcttccc        60
     cctctcacac gccgaccact atgtgctgac ttcgcccccc gccttgccca ccaacttcac       120
     gatgcactca acagccacgc cggccactat gtgctgactt cgccccccgc cttgcccacc       180
     aacttcacga tgcactcaac agccacgccg gccactatgt gctgacttcg ccccccgcct       240
     tgcccaccaa tttcacgatg cacccaacag ccacgccggc cactaagtgc tgcgttcgca       300
     ggagacactt tgctgccgat cgcgcccgct gcaaaactgc tgcgcctgca aatggcacat       360
     tgttgttatg agcagcgca                                                    379
//
ID   Gypsy-3_DSer-I repbase;    DNA;    INV; 7126 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-7126
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1979-1979 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1925..3265
FT                 /product="Gypsy-3_DSer-I_1p"
FT                 /translation="MEWDELYKELNYIKIDFDKSYKSLSRTRQAQQNTVNK
FT                 HAEILVNRFNTARILIHDQRDRLDKAHWSRVSKFLNRLRENLIFVKQRYNL
FT                 AISVPTILNTPLTIETESELSDSPALEPAEIDNPVSTDPEIEEKDINNLTI
FT                 PAVLIQSELSDQDLTDTDNNDSIVEVKPTTMADETIAQRAYIKEISSAIPE
FT                 FNGQRIQLQRFVTALKLVNLTKGTFENLAVEVIKSKIVGSTLYRVQNETTI
FT                 XAIIKKLQDTIVGETSDVVKAKMSKTVQKGKTAEKFTSEIDNLRKLLEASY
FT                 IDEGLSAEHADKFSTKEAITTMVKNCEHGRLKTILEAGNFTNMNEAVTKYI
FT                 QCSTEMTGNSNSILYAHRGNNYRGNNYRYNYRGRGNSRGNYRNNGYNQNNG
FT                 YNRNYNNQNNNYYRGNNRGGNNRGGNNRGASNNQNNVRVTQGNSGNQQNPS
FT                 AI"
FT   CDS           3235..6891
FT                 /product="Gypsy-3_DSer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="LGKPAEPFSYLEPKNGSVKTINLNLSIFVKINNERTG
FT                 KPYTLLLDTGADISILKENVDIFENVNDKIHTQISGIGEGTISSKGLACIE
FT                 LTTGKYIIPHDFYLVEQNFPIPSDGILGIDFIKQYNCQLDFTQSGDSLILR
FT                 PNNLNYPIKLQILHTCENNATVLPARSEVVREIQIPSIKNQILILNQEIDE
FT                 GIYIANTISNHKNTYVRIINTTNSNKIVNLNKIKYETLNNYDIIKETNEGR
FT                 DDFVMKKLIKNFPPLFKNELKELCTRYTDIFGLETESITTNNFYKQKLRVK
FT                 DDEPVYIKNYRSPHSQVQEIQSQVQKLIDDKIVEPSTSAYNSPLLLVPKKS
FT                 LPDSDKKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCLDLM
FT                 SGFHQIELEKSSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSG
FT                 LEPSQAFLYMDDLIVIGCSEKHMLKNLTDVFEKCRQHNLKLHPEKCSFFMH
FT                 EVTFLGHKCTDKGILPDDKKYDVIKNYPVPHDADSARRFVAFCNYYRRFIK
FT                 NFADYSRHITRLCKKDVKFEWTSECQNAFDHLKTALINPTLLQYPDFSKEF
FT                 CIITDASKQACGAVLTQNHNDXQLPIAYASRSFTKGESNKSTTEQELAAIH
FT                 WAITHFRPYIYGNHFTVKTDHRPLTYLFSMVNPSSKLTRMRLELEEFDFTV
FT                 EYLKGKDNYVADALSRITIKELQNITGNIKKVTTRNQSRQKSCAGDKETEL
FT                 PRQSEEKASKPNVYEVINNDEVRKVVTLHVNNKMCLFKHGKKITASYDVSD
FT                 LYTNGTFDLGQFFQRLEKQAGINKISQLKVAPWENIFELVSIDNFKIMGNK
FT                 ILKLLRVALLNPVTVIKNNKEKEAILSTLHDDPIQGGHTGITKTLAKVQRH
FT                 YYWKNMSKDIKEYIRKCPKCQKSKTTKHTKTPLTITETPQRAFDRVIVDTI
FT                 GPLPKSNNGNEYAVTLICDLTKYLVAIPIPNKSANTVAKAIFEDFILKYGP
FT                 MKTFITDMGTEYKNSIIEDLCKYLHIKNITSTAHHHQTVGTVERSHRTLNE
FT                 FIRSYISVDKTDWDVWLQYFVYCFNTTPSMAHDYCPYELVFGKTSNLPKHF
FT                 NSIDRIEPLYNIEDYAKESKFRLEQAYKRARIMLDVNKQKQKDRYDKNSLD
FT                 FELKIGDQVLLKNETGHKLDFKYTGPYKVEXIGDRDNITITNIKNKKQVVH
FT                 KDRLKPFIS"
XX
SQ   Sequence 7126 BP; 2826 A; 1284 C; 1217 G; 1790 T; 9 other;
     tggcgaccgt gacagttatt tgactataaa aggacctcac attcggaagg attaaaaaaa        60
     aaaaactgga cttggaaaaa tgatcgagaa gccgcctgga tgaaaaattt tccgaaaacg       120
     gaggaaaaat ggaaaacggc aaaaacgcag tgagtggagt gtgatgtgcg aaaaaagtgg       180
     agtgatgaac aagctaaagg ccagaaaggc tgagttacta aagctaatga gtagckgagk       240
     kagcttagag tgaaagcaat ggccaatcgc ggaggagttg caaaaaaaaa ataaaaaaga       300
     gaatagcaca cctaaagtgg ctactctacg tgaatactcc acctcccgca tgggctacga       360
     cccaaaaact tcagatagaa ttagatttcc tgaaggaaca aattaacaaa aataaacgcc       420
     caaaaattgc cgccactcac tcagtgccaa taaaaaaagt taatgaaaaa ataataacaa       480
     aacctccatc gcccaagcca ttaccggaac tcaaaaagac gtgccctgcc gactgccctg       540
     gaccgctgaa cagtgtgcat tgcaaataca catgcacaag gaaagacgat tagtgcgaga       600
     ggcaatccgc cccttacacc tccgtgggaa aagttgcctg tgcgaagacc agcaccggta       660
     ccgcctgagc ccataggccc aggacagcag cagcagcaca taaagcgtgg gaggcacgac       720
     cgccacctgc gccaccgagg gaacgtcagc gtagccaaac cggcgacgac cagctgacgt       780
     ggtcagaagc ggctcagacc aagcaaaaaa aaggaagcgc atatattttt taccaatgca       840
     ctgcgttgca taattttttt gattgcactg cgatgcatat tttttttata atataatata       900
     acttgtaaaa ttgagcggaa ccttttctgc ccaattagtc gtatggcccg tatagctgta       960
     caaataatag gtaggaaaag atgttagaga aaaactaaga ttctttttat aaaaattttc      1020
     cttttaatga gaagtaatag aataagtaaa acagatcaaa caaatgattc tgactattac      1080
     ttctcagaaa aattatataa aattacaaaa tatgacccaa wtgaaaataa aagagaaatt      1140
     ggaaaaatac caatagatac aacattcgaa atgggtcttg tggatttaaa aactgtggat      1200
     tccactgcaa atgtaattaa taaggtkgag acacaaaata ttgattcaca gttaacaaac      1260
     attttattgt caattattgt ttttattctg tgcgcagtca ttttgtataa agcttatatg      1320
     ttccacaata ggtgcatatc aaaaagagcc ataaataaaa gccaggctaa tgacctggac      1380
     aagatataat aagcgctgac aatatttgaa ataaaatgtt tttgaattaa tatccaaaaa      1440
     taagaaaata atatataaaa taaaaacaaa aatatgtatg actatgtaaa atatattaag      1500
     aactaaaaaa caaataaaaa aaaaatataa gaaatacatt acttgwaatt aaataataat      1560
     gatttaaaat aataaataat taaaaaaaaa attagcacaa tgtctagtaa taaagctgac      1620
     attaggagta ccgacatgag tgaggagatg cagaaaattg ccattgattg cgcaagacag      1680
     gctcttaacg agaatagcat cgaatataag attgccgaac acattaaaaa tcagttcgat      1740
     atacaattca aacctaaatg gcattgcatt gtcggcagtg aattcggatc ttatgtatct      1800
     catgagccaa accattttat ctatttctat ttggacaagc tagccattct attgtttaag      1860
     agaggttaga aatagaaagt tagttatgat tcgagcttcg ttcacaaaat aattccatta      1920
     aataatggaa tgggacgaat tatacaagga attaaattat ataaaaattg attttgacaa      1980
     atcgtataag tcattatcaa gaactcggca agcacagcaa aatactgtga acaaacatgc      2040
     tgaaatatta gtaaaccgct ttaacactgc gcgtatactg atacatgacc agagagaccg      2100
     gctagacaaa gcccattggt ctcgagtatc aaagttcttg aacagattgc gagagaactt      2160
     aatattcgtt aaacaaaggt ataacttggc catttcagtg ccaactatac taaacacccc      2220
     tttgacaata gagacagagt cagaattatc agattcgcca gcccttgagc cggctgagat      2280
     agataacccc gtctctacag accccgaaat agaggaaaaa gatataaaca acctcactat      2340
     tcctgcagtc ctcattcaat ctgaattatc agatcaggac ctcacggaca cggataataa      2400
     cgacagcatt gtagaagtaa aaccgaccac aatggctgac gaaaccattg cccaaagggc      2460
     atatattaag gagatttcga gtgccatccc agaattcaac gggcaaagga tacagcttca      2520
     gagatttgta acagctttga agttggttaa ccttacgaaa ggcactttcg aaaatttagc      2580
     cgtagaggtt attaaatcca aaattgtagg atcaacgctg tacagagtac agaatgagac      2640
     aacaatagan gcaataataa agaaactgca agacactata gtcggtgaaa catccgacgt      2700
     ggtgaaagca aaaatgtcaa aaacagtcca gaaaggcaaa acagccgaaa aatttacatc      2760
     agaaatagac aacctacgaa agctcctcga agcttcatat attgacgaag gcctttcggc      2820
     cgaacacgct gacaaattca gcacgaagga agccatcacc acaatggtta aaaattgtga      2880
     gcatggcaga ctcaaaacaa tattagaagc aggaaatttc acaaacatga atgaggccgt      2940
     cactaagtac atacaatgta gtactgaaat gacaggtaat tccaattcaa tattgtacgc      3000
     ccaccgagga aacaactatc gcggcaacaa ttacagatac aattatcgcg gtaggggtaa      3060
     tagccgaggt aactaccgaa acaatggcta taaccaaaat aacggttaca accggaatta      3120
     taataatcaa aacaataatt attatagagg taataaccgt ggtggaaata accgtggcgg      3180
     aaacaaccgc ggggcaagca ataatcagaa taatgtccga gtaacccaag gtaactcggg      3240
     aaaccagcag aacccttcag ctatttagag cccaaaaatg gctcagtaaa aaccatcaac      3300
     cttaatctca gcatctttgt aaaaattaac aatgaaagaa caggtaaacc ttatacactg      3360
     ttgcttgaca ctggtgcaga tatatctata ttaaaagaaa atgtagatat atttgaaaat      3420
     gtaaatgata aaattcatac ccaaatatcg ggaattggtg aaggcacaat ctcttcaaaa      3480
     ggtttagcct gtatagaact cactacaggt aaatatataa ttccgcacga cttctattta      3540
     gtcgagcaaa atttcccaat acctagtgat ggcatactag gaatagattt cataaaacaa      3600
     tataattgcc aattagattt cacacagagt ggcgactcac taattcttcg cccaaacaac      3660
     ttaaattatc ccattaaatt acaaatactt catacctgtg aaaataatgc cacagtactc      3720
     ccagctcgtt ccgaagttgt ccgtgaaata caaattccct caataaaaaa tcaaatactg      3780
     atattaaatc aagaaattga tgaaggaatt tatatcgcaa atacgatatc caatcacaaa      3840
     aatacttatg tccgtattat aaatacaaca aattccaata agattgtaaa tttaaataaa      3900
     attaaatatg aaactctaaa taattatgat ataataaaag aaactaacga aggaagagat      3960
     gacttcgtta tgaaaaagct aattaaaaac tttccgccct tgttcaaaaa tgaattaaaa      4020
     gagttatgca ccagatatac agacatattc ggactggaaa ccgaatcgat aacaacaaat      4080
     aatttttaca agcaaaagct tagagtgaag gatgatgagc ccgtatacat taagaactat      4140
     agaagtcctc acagccaagt acaagaaatt caatcccaag tgcaaaaatt gatagatgac      4200
     aaaatagtcg aaccatcaac ttcagcttat aatagccccc ttttattagt tccgaagaag      4260
     tccctcccgg actctgacaa gaaaaaatgg cgattagtaa tcgactatcg tcaaattaat      4320
     aaaaagctat tgtccgataa attcccacta cctagaattg atgatattct agatcaacta      4380
     ggtagagcaa aatatttttc atgcctagac ttaatgtctg gctttcacca aattgaactt      4440
     gaaaaaagtt ccagggatat aacgtcattt tcaacgagca atggctcgta tcgctttacg      4500
     cgattaccat ttggcttgaa aatagcccca aattcatttc agagaatgat gactatcgct      4560
     ttctctggat tagagccttc gcaagcattt ctttatatgg atgacttaat agtcatagga      4620
     tgttccgaaa aacatatgct caagaactta actgatgtct ttgagaaatg taggcaacat      4680
     aacctaaagt tacatcctga aaaatgttca tttttcatgc atgaagtcac atttttggga      4740
     cataaatgca cagataaagg aatcttgcca gacgataaaa aatacgacgt tataaagaac      4800
     tacccagtcc cacatgatgc ggacagcgct agacgattcg ttgctttttg caattactat      4860
     aggcgcttta taaaaaattt tgccgactat tctcgtcaca taaccaggtt atgtaaaaaa      4920
     gatgtaaaat tcgaatggac atctgaatgc cagaatgcct tcgatcatct taaaacggca      4980
     cttataaatc caacactgtt acaatatcca gatttttcta aagaattctg cataataacc      5040
     gatgcaagta agcaagcgtg tggagcggtt ttaactcaaa accataatga tmtccaactt      5100
     ccaattgcat atgcatcacg atcctttact aaaggagaaa gtaacaaaag tactactgag      5160
     caagaattag ctgctattca ttgggctata acacattttc gaccatatat ttatggtaac      5220
     cactttacgg ttaaaacaga ccatagacca ctaacatatt tgttctcaat ggtaaatcct      5280
     agctctaaat taacacgtat gaggcttgaa ttagaggaat tcgattttac ggtagaatac      5340
     ctgaagggta aagataacta cgtagctgat gcattatcaa gaataaccat caaggagcta      5400
     caaaacatta ctggaaatat aaaaaaagtc actacaagaa atcaaagtag acagaaatcc      5460
     tgcgcaggag acaaagaaac agaattgcct aggcaatctg aagaaaaagc ttcaaagccc      5520
     aacgtatatg aagtcattaa taatgatgaa gtacgtaaag tagtgacctt gcatgtaaat      5580
     aataaaatgt gtttattcaa acacggaaag aaaattacag caagttatga tgttagcgat      5640
     ttgtatacta atggaacctt tgacttaggt caattcttcc aaaggcttga aaagcaggcc      5700
     ggtattaaca aaatcagcca actcaaagtg gcaccgtggg aaaatatctt tgaactagtt      5760
     tcaattgata attttaaaat aatgggcaat aaaatattga aattattaag agtagcgcta      5820
     ctcaacccgg tgaccgtaat aaaaaataat aaagaaaaag aagcaatact gtctacatta      5880
     catgatgatc caatacaagg tggtcacaca ggcattacaa aaaccttggc caaggtccag      5940
     agacactatt actggaaaaa tatgtctaaa gacataaaag agtacataag aaaatgtcca      6000
     aaatgccaaa agtctaaaac gactaaacat acaaagaccc cattaactat aaccgaaact      6060
     ccacaacgag ctttcgacag ggtaattgtg gatacaattg gtccactacc aaaatcaaat      6120
     aatggaaacg aatacgcagt aacactcatc tgcgatttaa ctaaatattt agtagctata      6180
     cccataccaa acaaaagtgc aaatacagta gcaaaagcta tatttgaaga ttttattcta      6240
     aagtacggtc caatgaagac gttcattacg gacatgggaa cggaatataa aaattcaatt      6300
     attgaagatc tatgtaaata cttacatatt aaaaacatta cttcaactgc acaccatcac      6360
     cagacagtag gaaccgtgga gcgaagccac agaacactta atgagttcat tcgttcatac      6420
     atctcagtcg acaaaacaga ttgggatgta tggctacaat acttcgttta ttgttttaac      6480
     acaaccccct ctatggcaca tgattattgt ccatatgagc tagtttttgg taaaacttca      6540
     aatttgccaa aacatttcaa tagcatagat agaatagaac ccctttataa tatagaagac      6600
     tatgctaagg aatcaaaatt tagattagaa caggcatata agagagctag aataatgcta      6660
     gatgttaata aacaaaaaca aaaagataga tacgataaaa atagcttaga ctttgaatta      6720
     aaaataggcg atcaggtttt attaaaaaat gaaactggcc ataagctgga ctttaaatat      6780
     acaggtcctt ataaggtaga asaaatagga gatagagaca acataactat aacaaacatt      6840
     aaaaataaaa aacaagtagt acacaaggat agattaaaac cttttatttc ataattaatt      6900
     tagttctttc tatatttcac gtatggccat acatgaataa atacgataaa caacaattaa      6960
     ttctaacaat tataaataac atacatagca taagtatcat atataccaat acacaaaaaa      7020
     aaaaaaaaaa aaaacaacaa aaatatatat ataagtatat atgcataaat atacctaatt      7080
     ataaaataac ttcattatat tacgttattt ttcaaaagga gggaga                     7126
//
ID   Gypsy-3_DSer-LTR repbase;    DNA;    INV; 455 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-455
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1991-1991 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 455 BP; 144 A; 98 C; 84 G; 126 T; 3 other;
     tgtagtatgc acatatattg aatacccact gtaccaagag tacttatcgg gtacacactg        60
     taacactttg ttgcagtgtt tacataagtc atgaacctca agtggacgaa atatgaactg       120
     cccacttata cattggcccg cacacaaata gtgcaagtgt cagcataaat gcaacacgag       180
     cggaccacat gtatgtatgt gcatatatct ccgcgctcag ctttaagcga gcatagctat       240
     gtgtttatgt atttaagaat atatataacc gtctctctgc cgccgcctgc gagcagcgca       300
     gctacgagac ttagccttac ttagacttaa gaaatattgt aaaagaacag agacattttg       360
     atcgttggag cggcacctca gctgctccta ttaataaata aamccaamtt ataaatmaaa       420
     cccctggagt ttctattggc aattatatta taaca                                  455
//
ID   Gypsy-3_DSim-I repbase;    DNA;    INV; 4902 BP.
XX
AC   .
XX
DT   03-OCT-2011 (Rel. 17.08, Created)
DT   03-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DSim_;
KW   Gypsy-3_DSim-LTR; Gypsy-3_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4902
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1500-1500 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3959-4429] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1499..4900
FT                 /product="Gypsy-3_DSim-I_1p"
FT                 /translation="MEEEINKESEIMRPQLNPEGINRIQTDTKSSNMQWEC
FT                 SRCGRKGHNHNSPNCPALKQQCNKCTRFGHFANKCRTNLKRPGNQNNSNAT
FT                 KRQRSNVNLVNEGDDKKPANNCFKILSDDEDEAIKCQVGGQEMPFIIDSGS
FT                 RFNLISPEDWSVLQDKKATIFNVQWDCSNHFRAYASDELLQVICCFDAPVS
FT                 VGSNPEVIAPFFVIKKGKQSLLGKETAIKLQVLRLGLGVHSIESVSPFPKW
FT                 KGLPVKLSIDPDIKPVQQPMRRIPIALEEKVIGKLEEALALDIIEPVMGHS
FT                 QWISPMVMTFKENGDLRICIDMRLANKAILRENYPLPIFETFMTKLRGAKY
FT                 FSRLDLKYAYHQLELDEASRAITTFITPRGLFRYKRLMFGVNSAPEIFQRR
FT                 LEELLAPCRNVLNYIDDIIIFGTNENDHDNAVKEIKDILEKNNVLLNAEKC
FT                 IWKTDKVKFLGHILSDRGIEVDPEKVSTILSFRSPKNKEEVRSFLGLVTYV
FT                 GKFIPDLADRTEPLRRLLRKDCRFNWDKNEEKAYEDLKSHLAKIPNLSYFD
FT                 PDNTTQLIADASPVALGAVLLQFTRDKELKIISFASRSLSDVEKRYSQTEK
FT                 ESLALVWAVEKFYFYLAGLEFELVTDHKPLEAIFKPTSKPPARIERWLLRI
FT                 QAFKFKVIYKAGKENISDALSRLCELAATNSSWRNDEYNVFRVIEYSVPAA
FT                 LHISEISQANSMDEEIIDAMSCLETDTWDPCTSNKFYPFRYELSTLGKILL
FT                 RGTRLVIPATLRKRVLELAHEGHPGESAMKRRLRSKVWWPRIDRDAENFVK
FT                 ACRDCLVVSQPLGPAPMQRTPFPTSAWMSIASDLLGPLPNGKYVLVFIDYF
FT                 SRYMELKFMQSISSTAIIGAMKEIFCRLGFPKYLRTDNGRQYVSEMFENYC
FT                 SLNGITLIRTPPYWPQANGEVENINKSLVKRLKIAHLNKKNLEQEIQEFLL
FT                 MHNVTPHGTTGTAPSELMFNRLIRDKIPNIQDVVGAFTDSAEKDNDQIQKH
FT                 KGKVAGDKKRGAKDVDIQVGDQVLMKNVIFPSKLTPNFDITEYQVLEREGN
FT                 IVKVSGGGKTLLRDVSHLKKIPAASTTMTVPASTTNLEKHNQHSLAKSSEE
FT                 NDTSAGPGLKLKLKNIGGMWEPVREE"
XX
SQ   Sequence 4902 BP; 1663 A; 936 C; 1092 G; 1211 T; 0 other;
     actgtgaaat aaagtgtatt gaaacgaaga ctaaactact gaattattac attggcgacg        60
     aggtaaaaaa aaaaacaaca acttataaat taattaaaat aagaaaaatt cagtgcaaac       120
     cggcatatgc tgaaattagc acgcaacagt cccgttagtt tgttcttttc gttccctggc       180
     gttcttcgta tatatacata tatacatatg tacatacaaa tgtggtatcg aacgcgcgaa       240
     cgaatacaaa tagacaaatt aatgcaaggg agaaataaca tgtaaattaa cattaaaaaa       300
     aaaaatgttt agcgcaaatc tgtgatggca aaattgtcac acaataattc gataattttt       360
     ttttcctcgc tcactctcgt tgttcgtatg tacatatgaa cgcgcgggca aatgcacgct       420
     gacgaactaa tgtgatgaag agaagaaaga atgaaggaaa agaaataaaa tataagaatg       480
     ctcgcaggca tttcagttat ggcagctcgt atgtaaaaaa aaacacaaca acaataaaag       540
     aatgaaaaat aaaaggaaag agaaaacaac tgacaaatta cagtgacagt gtcaagagac       600
     acagatttta ttattgttct atctgacttg ggtcaggggc tgtactaaat gtacaagccg       660
     agtaaataat tttgagctga cttaagtcag gggctgtact agatgtacga gccgaacaaa       720
     taatcataag ctgatttaag tcaggggctg tactaaaggt acgagtcgaa taattagata       780
     tgagctgatt tggatcaggg gctgtactaa agtatcagtc gataggtatg cacatgtata       840
     tgtataccac ggtatattcc ttgaaaacta tatgtaacta attacgatct gactaagtca       900
     gaggcagttg gccaaaaata ttaaagcaaa atttattttc agtcgaccta caagcaatgg       960
     cagagagcgt aatcaggccg tttctttgcg agacgattga gaagtccctg ttgcgtgtgg      1020
     aatgggagaa atggcttaga gctttcgaaa tatatgtgca agctgaggag atcatcagtt      1080
     caccatcccg gaaaagaaac aaactgttac atcttggcgg ccctcagcta caaacggtag      1140
     cattttcact gcccggagcc gtgataacgg aaacggcggc tggagaccag accgacgtat      1200
     ttcagacgtt agtcgataag ttgaatgcgt ttttctcgcc gaaacagaac tcaagcttcg      1260
     agagacatct atttaggaac ctttctcctt cctttctcct gcagaggggg agacatttgc      1320
     gaagtttgta ttgaggctga ggtaccaaat tcaaaaatgc gattttggat ccactaaagc      1380
     cgaaatcgag gagatctgtt taaaggataa aatcatcgat agctgcgcca acataagcct      1440
     aaaacggaaa cttttggaaa aagagtacaa tttatcggag ataataaatc tctgccaaat      1500
     ggaggaagaa atcaacaaag agtccgagat aatgcgacca cagctgaatc cggagggaat      1560
     aaacagaata caaacggata cgaaatcgtc caacatgcag tgggagtgca gcagatgtgg      1620
     tcgaaaaggt cacaaccata atagccccaa ttgtccagcc ttaaaacaac aatgcaataa      1680
     atgcacacgg ttcgggcact ttgcaaacaa gtgccgaacc aatttaaagc gaccaggaaa      1740
     ccagaacaac agcaatgcaa caaaacgaca acgctcaaac gtgaacctgg taaatgaagg      1800
     ggatgataag aaaccggcaa ataactgttt taaaattcta agtgacgacg aagacgaagc      1860
     gatcaaatgc caagtgggtg gccaagaaat gcctttcatc atcgactcag gatcacgttt      1920
     caatctcata agtccggagg attggtcagt tctacaagat aagaaagcaa caattttcaa      1980
     cgtccaatgg gactgctcga atcattttag agcatatgct tcagacgaat tactgcaagt      2040
     aatctgttgt tttgatgcac ccgtatccgt tggatctaac ccggaggtaa ttgctccatt      2100
     ttttgtaatt aaaaaaggaa aacaatcact actgggcaag gaaacggcga taaagctaca      2160
     agtattacga ctcggtttgg gagtccacag tatagagagc gtatctccat ttccaaaatg      2220
     gaaaggattg ccagttaaac tatccattga cccagacatc aaaccagttc aacaaccgat      2280
     gaggcggatt ccaatagcgt tggaagagaa agttattgga aaactggagg aagcgttagc      2340
     cctcgatatc attgaaccag taatgggaca ttctcaatgg atctcaccaa tggtcatgac      2400
     attcaaagaa aacggggatc tccgcatctg tatagacatg agactagcca ataaagcaat      2460
     tttaagggag aactatccat tgcctatctt cgaaacgttt atgaccaaac tgagaggagc      2520
     gaaatatttt tctcgtctgg atctcaaata tgcatatcat caattagaat tggacgaggc      2580
     tagcagagct ataacaactt tcataactcc tcgtgggttg ttccggtata agcgattgat      2640
     gttcggggtt aactctgcac ccgaaatttt tcaaagaaga ctggaggagc tactggcacc      2700
     gtgccgaaat gtcctgaatt atatcgatga tatcatcata ttcggaacca atgaaaatga      2760
     ccatgataac gccgtaaaag aaataaagga tatattggag aaaaacaatg tcctcttgaa      2820
     tgcggagaaa tgcatttgga agacggataa agttaaattt cttgggcata tcctgtcaga      2880
     cagaggaatt gaagttgatc cggaaaaagt atccacaatc ctttcattca gaagtcccaa      2940
     aaataaggag gaggtccgca gttttctggg ccttgtcact tatgttggca aattcatacc      3000
     ggatttagcc gaccgtacag aaccattaag acgtttgcta agaaaggatt gcagatttaa      3060
     ttgggataaa aatgaggaaa aagcatacga ggacctaaaa tctcatttgg ccaagatacc      3120
     aaacttgtcc tattttgacc ccgataacac tacacaactg atagccgacg ccagccctgt      3180
     cgcgctcgga gctgtactat tacagttcac tagagacaag gaactaaaaa taatttcgtt      3240
     tgctagtcgg agtctatcgg atgttgaaaa gcgatattca cagacggaaa aagaaagtct      3300
     ggccttagtc tgggctgttg agaagtttta tttttacctg gctggattag aattcgagct      3360
     ggtgacggat cacaaaccac tggaggcaat attcaaacca acttcgaagc ctccagcgcg      3420
     aattgaaagg tggctcttac gcatacaggc gttcaagttt aaagtaatct acaaggcggg      3480
     caaagagaat atttcagacg ctctgtctcg actttgtgaa ctggctgcga cgaactcttc      3540
     ctggcgaaat gatgaatata atgtctttcg ggtcatcgaa tactctgttc ctgcagcgtt      3600
     acacatatca gaaatatccc aagcaaatag tatggatgag gaaatcattg acgccatgtc      3660
     ctgtttggag actgacactt gggatccatg tacatcaaac aaattttacc catttcgata      3720
     tgaactttcg acgcttggga aaattctgct tagaggaaca cgattagtca tcccggcaac      3780
     acttcgaaag agagtattag aacttgccca tgaaggtcat ccaggcgagt ctgcaatgaa      3840
     gcggcgttta aggtcaaagg tatggtggcc acgcatcgac cgagacgcag agaattttgt      3900
     aaaagcatgt agagactgtt tagtagtctc tcaaccttta ggcccagcac cgatgcagag      3960
     aacaccattt ccaacaagcg cttggatgtc gatagccagt gatcttttgg gtccattgcc      4020
     gaatggaaaa tatgtcctgg tctttataga ctatttttca agatacatgg agctaaagtt      4080
     tatgcaatcg atatcctcaa cagctattat tggggcaatg aaggaaatat tctgccgatt      4140
     agggtttcca aagtacctgc ggacagataa tggtagacag tacgttagtg agatgtttga      4200
     aaattattgc agtttgaatg gcattaccct aatacggact ccaccatatt ggcctcaggc      4260
     taatggtgag gtggagaata taaacaagtc cctagtaaaa agactaaaaa ttgcacactt      4320
     aaacaagaag aacttggagc aggaaattca ggagtttctt ttaatgcata acgtcacccc      4380
     tcatggtact actggaacag ccccttcaga gttaatgttt aatcgtttga ttcgagataa      4440
     aattcctaac atacaagatg ttgtaggggc ttttactgac tcggctgaaa aagataatga      4500
     ccagatacaa aagcataaag gtaaagtagc tggggataaa aagagagggg caaaggatgt      4560
     agacattcag gtaggagatc aggtactaat gaaaaacgta atatttccta gtaagctgac      4620
     accgaacttt gacataactg aataccaggt cttggagcga gagggaaata ttgttaaagt      4680
     ctcagggggt ggtaagacac ttcttaggga cgttagccat ctaaaaaaga ttccagctgc      4740
     ctccaccacg atgacggttc cggcttccac cacgaacttg gagaaacaca accaacactc      4800
     gctggccaaa tcatccgagg aaaacgatac gtctgcggga cctgggttga agctcaagct      4860
     gaaaaacata ggagggatgt gggaaccggt gcgagaggaa ga                         4902
//
ID   Gypsy-3_DSim-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   03-OCT-2011 (Rel. 17.08, Created)
DT   03-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DSim_;
KW   Gypsy-3_DSim-I; Gypsy-3_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-150
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1501-1501 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 150 BP; 57 A; 29 C; 33 G; 29 T; 2 other;
     tgagcgcaac tcacgctctc ccgattaatc taacataagc agagagacga gcgatcgggc        60
     tggagagaga gagkcagtcg atcaatggag ttgaatgcga acacacgtat tagaataacc       120
     attgtaaact aataatwaat aataaaacca                                        150
//
ID   Gypsy-3_DTa-I repbase;    DNA;    INV; 4570 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   26-AUG-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DTa_;
KW   Gypsy-3_DTa-LTR; Gypsy-3_DTa-I.
XX
NM   Gypsy-3_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4570
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
RN   [2]
RP   1-4570
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (26-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           501..4568
FT                 /product="Gypsy-3_DTa-I_1p"
FT                 /translation="MQREEILALNVNALKEQLSLLNLATSGRKQTLQDRLL
FT                 DHYNLSAEVIEDDESDYGDAASQHDSRSTPGEGRSSFTLRDIEDSLSQFNG
FT                 SSQPSVHSWIQEFEDNAAAVQWNNLQMFIYSKQLLKGAAKIFVRSQTGISN
FT                 WSSLKRALKAEFGSDVSAIEVHRMLKNRRKVPNEDYKEYLYSLMEIGKPVT
FT                 LDDASLIEYFIEGIPDSRGNKSNLYQARTLQELKEQIKVYEKIRSSRPQVL
FT                 NTAKSYITNEDKQPDVTKQHFKKCFKCGDPSHFAKECNKPIKCYRREQPGH
FT                 KASNCPGSRVAETKDGKSADTMTSHISSSGKCIFKEIFCNGVRFSALIDTG
FT                 CDLCLIRDDVVEMLGNIKLVNEKHCLVGICNSELSTLGSFVTQVAVDNTCL
FT                 DLHFHVANRNDIKYSAVIGNSILKQVDLIFSEKSVKFQPKGNQNSQESFTT
FT                 GKAVESELKIFQEYPQVCLFAESEEHEIDVAHLERSIAKTVKDLTNNYKPE
FT                 KKKDSPIQMKILLNDEYPVYERPRRISHADKSIVDNQVEKWLSEKIIQPSS
FT                 SEYASPVVLVPKKDGSKRLCCDYRRLNAKIAKDHFPMPLIDDVIERLQGNS
FT                 LFTTLDLANGFFHVPVEQNSRKYTSFVTHAGQFEFLYVPFGIFNSPAVFSR
FT                 FIYAILLDMVQDGTVVTYMDDLIIPSKDVNEGVHKLERVLNRASEFNLKIK
FT                 WSKCQFLKGKVDFLGYIVEGGTIRPSEAKTQAVKNFSLPHDRKSLQRFLGL
FT                 TSYFRRFIADYALKAKPLSDLLRKNIPFRLAEEQLAAFDQLKIALISAPVL
FT                 RLYNPKAQAEIHTDASMHGYGGVLLQKDPDDQQLHPIQYLSRKTKPAEEKY
FT                 HSYELEVLAIVEALKKWRVYLLGIKFKIITDCNAFALTMKKRGEIPLRVSR
FT                 WALFLQDYDYAIEHRSGIKMWHVDALSRVSCLMLEDTLHHKLQEAQSQDEW
FT                 VRAVMAALENSTYDDFFVKHGILYKDPIKELIVVPTLMEEEIIRMAHKQGH
FT                 FSVKRTQEAVEKTFYIPDLSKKVTREIKSCVECIISEVKAGKKEGFLTPIN
FT                 KDERPLETYHVDHVGPIEQTSKNYNYILVVIDAFTKFVWLHPTKNTTAEGV
FT                 IDRLTRQAAVFGNPRRIISDKGAAFIANTFKQYCVENGIQHLMIATGVPRG
FT                 NGQVERIHKIVIPMLAKLCQEKPCSWYKHLEVVQQVINSTPPRSTRFSPFR
FT                 ILTGVEMRTNKVAELNTFLEDAAIEGLDQERETVRMEAQDNIAKIQQENRR
FT                 SFNKGRKKELTYKINELVAIKRTQYGTGLKLKPKFFGPYKIIRTLPHGRYD
FT                 VEKVGDHEGPGKASTVAEYMKKWNPESEPAEVPSFEPNDNSGWP"
XX
SQ   Sequence 4570 BP; 1482 A; 925 C; 1065 G; 1098 T; 0 other;
     aatttggtgt cagaagtggg atttacttgg aaaaacagca gagaagcgac cgtggcacaa        60
     agattcgtta aaatcagagt gtggctaatt gcgcatcagc aattaggagg cgttgtacgt       120
     ggaggaaaag cagttaactg gcagatcgtg tacaccggag aggtgtagca aggtgcgcat       180
     cctgcgcaaa ggtcctgcaa ggagaaagga gacatcgaaa acttggcttt gggaaagcga       240
     aagtctggcg aaaaggctgc aaaaatagcg caatctggtg aaatagcctg agagacagcg       300
     tcaacgtcat cgtcggcaca gggtgtgcat tgtttgcaga aacggagagt gagcgaactg       360
     gatcacttat tttgtatttt caaatctata atattacaca aaaattcatt gtattaccta       420
     atcactaagt taagttcaag tattcactat aatttgttaa tttttaacca ttgtaagcag       480
     agagtaaaaa cgagtacaga atgcagaggg aagaaatttt ggcgttaaac gtgaacgcat       540
     tgaaggagca attatcgctg cttaatttag ctacaagcgg taggaagcag acactgcagg       600
     acagacttct cgaccactac aacttgtcag ctgaggtaat tgaggatgac gaatctgatt       660
     acggggatgc agcttcgcag catgactcaa gatctacacc aggcgaaggt cgcagttcat       720
     ttacattgcg cgacatagaa gactcccttt cacagtttaa tggttcaagc cagccgtcag       780
     tacacagctg gatccaggag tttgaagata atgcggcagc agtccaatgg aataatcttc       840
     aaatgtttat ttattcgaag caattgttaa aaggcgcagc aaaaatattc gttcgaagtc       900
     agacaggcat ttccaactgg tcatcactta agcgagcact caaagctgaa ttcggatcag       960
     acgtatcggc aattgaagtt caccgcatgc taaaaaatcg acgaaaagtc ccaaatgagg      1020
     attacaagga gtatctgtat tcgctcatgg aaataggaaa gcctgttact ttggatgatg      1080
     ccagtcttat agagtacttc atcgaaggta tacccgactc gagaggcaac aaaagcaact      1140
     tgtatcaggc caggactctg caggagctca aggagcaaat aaaggtgtat gagaaaattc      1200
     gtagcagtcg ccctcaagtg cttaatacgg ctaaatctta tattaccaac gaagacaaac      1260
     aaccagatgt gaccaaacag catttcaaaa aatgtttcaa gtgtggagat ccttcacatt      1320
     ttgcaaagga gtgtaacaag cccatcaaat gctacaggcg cgaacagcca gggcacaagg      1380
     catcgaattg cccaggttct agggtagctg aaacgaagga tggaaaaagt gccgacacaa      1440
     tgacgagcca cattagcagc agtggcaaat gcatttttaa ggaaattttc tgtaatggcg      1500
     ttcgattttc cgctttgatc gatacaggct gtgatctctg ccttatccgt gatgacgtgg      1560
     ttgaaatgct agggaatatc aagcttgtga acgaaaagca ctgtctggtc ggcatttgta      1620
     acagcgaatt aagtacgctt ggcagttttg taacccaagt tgcggtagac aacacttgtt      1680
     tggacctaca ctttcacgtt gctaacagaa atgatattaa gtattcagca gtcatcggga      1740
     atagcatttt gaagcaagtg gacttgatat tctcagagaa gtcggtaaaa tttcaaccaa      1800
     aagggaacca gaacagccag gaatccttta ctacaggaaa agcagtcgag tcagagctaa      1860
     agatattcca ggaataccct caggtatgtc tttttgctga aagcgaggag cacgagatcg      1920
     acgtcgctca cctggagaga tcaattgcta aaactgtgaa agatttgaca aacaactaca      1980
     agccagagaa gaaaaaggac agtcccatac aaatgaaaat tttgctaaat gacgaatacc      2040
     cagtctatga acgccctcga cgcatttcac atgcagacaa gtctattgta gacaaccagg      2100
     ttgagaaatg gctatcagag aagattatcc agccaagttc atctgagtat gcctcacctg      2160
     ttgtcttggt accgaaaaag gatggcagca agcggctttg ttgcgactat agacggctaa      2220
     acgcgaagat tgccaaggat cattttccga tgccacttat agatgatgtc attgaaagac      2280
     tgcaaggaaa cagccttttc acgacacttg acttagcgaa tggatttttc catgtaccag      2340
     ttgagcagaa ttcgagaaaa tatacatctt tcgtgacgca tgcaggacaa tttgagttct      2400
     tatatgtccc gtttggaatc tttaactcac cagccgtatt ttcaagattc atttatgcaa      2460
     ttctactgga tatggttcaa gacggtacag tcgtaacata catggatgat ctcattattc      2520
     cctctaagga tgttaacgaa ggagtccata agctagagcg tgtcctcaac cgagcttcag      2580
     agtttaattt gaaaattaag tggagcaaat gtcagtttct aaagggaaag gttgactttt      2640
     taggttatat tgtcgaagga ggaactataa gaccgtcaga agccaaaacg caagcagtca      2700
     agaacttttc gcttccacat gatcgaaaga gtcttcagcg tttcctcgga ttaacatcct      2760
     actttcggcg attcattgcc gactacgcgt tgaaggccaa accactttct gatttgcttc      2820
     gtaaaaacat tccattccga ttggccgagg aacaactcgc agcattcgac caactaaaaa      2880
     tagctttgat atctgcaccg gtgttacgtt tatataatcc aaaagctcag gcggaaatac      2940
     acacagacgc ttctatgcac ggctatggag gagttctcct gcaaaaagat ccggacgatc      3000
     aacagttgca ccccatacaa tacctaagcc gaaaaacgaa gccagctgaa gagaaatacc      3060
     actcttacga actcgaagtg ttggctatag tcgaagcttt gaaaaaatgg cgtgtctatt      3120
     tacttgggat aaaattcaag atcattaccg attgcaatgc atttgcttta acaatgaaaa      3180
     agcgcggcga aatcccttta agagtttcac gttgggcatt gtttctccag gattacgact      3240
     atgccatcga acatcgaagt ggcatcaaaa tgtggcacgt ggacgccttg agtcgagttt      3300
     catgtctaat gctggaagac actttgcatc acaaactgca ggaagcacag tcgcaggatg      3360
     aatgggttcg ggcagtaatg gcggccctcg agaacagcac gtatgatgac ttcttcgtta      3420
     agcatggcat actctacaag gatcccatca aagagttgat cgtggtgccg actctgatgg      3480
     aggaagaaat cattcgaatg gcccataagc aaggacattt ctctgtaaaa agaactcaag      3540
     aggcagtaga gaagacattt tacataccgg atttatcgaa aaaagtaaca agagagatca      3600
     agagttgcgt cgaatgtatt atttccgagg tcaaggcagg caaaaaggaa ggtttcttaa      3660
     cacccattaa caaggacgaa aggccgttgg aaacatatca tgttgaccat gtcggaccaa      3720
     tagagcagac cagcaagaac tacaattaca ttctcgttgt gatcgatgcg tttactaagt      3780
     ttgtctggct ccacccgaca aaaaatacaa cggctgaggg agttattgat cgactaactc      3840
     gtcaagcggc agtgtttgga aacccgaggc gtatcatatc agacaaaggg gcagcgttta      3900
     ttgcaaacac atttaaacaa tattgcgttg agaacggcat tcagcatcta atgatagcta      3960
     ccggagtacc ccgaggaaat ggtcaagtgg agcggatcca taagatcgtg attccgatgt      4020
     tagccaagct ttgtcaagaa aaaccttgta gctggtataa gcatcttgag gtcgtacagc      4080
     aagtgataaa cagcacaccc ccaagaagca cgagattctc accttttagg atattgacag      4140
     gcgttgaaat gagaacaaac aaagtagcag agctgaacac attccttgaa gacgctgcta      4200
     tcgaaggatt ggaccaagaa agagagaccg ttcgtatgga agcgcaggat aacattgcca      4260
     aaattcaaca ggaaaatcgt agatccttca acaagggtcg caagaaggag ttgacctaca      4320
     aaatcaacga gctcgtggcc ataaagcgca cacagtacgg taccggctta aagttgaagc      4380
     cgaaattctt tggaccatac aaaataataa ggactttacc tcacggccga tatgacgtag      4440
     aaaaggttgg agaccatgaa ggtccgggca aagcatcaac ggttgcagaa tatatgaaga      4500
     agtggaatcc ggaatcagaa cctgcagaag taccatcatt cgagccgaat gataattcag      4560
     gatggccgac                                                             4570
//
ID   Gypsy-3_DTa-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   AFFI01004168;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DTa_;
KW   Gypsy-3_DTa-I; Gypsy-3_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-308
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01004168; Positions     755     448.
XX
SQ   Sequence 308 BP; 103 A; 57 C; 47 G; 101 T; 0 other;
     tgtgggaaaa caaaggaaaa caaggagtgg tcaggtctac aatagttctg cctaaacata        60
     ttagacattt aatttagtat ttttcattaa cattaccttc actatataaa tatatcgctt       120
     gcaactctgc aaaaatattt taatcgatac tgcacgaaaa gaatcgtcgc attaagtact       180
     cgcttttgct ttctgttctt gaatcacaga agttgtaaaa ccccaaaaac ctactgtttt       240
     tccgtattaa taaaagtcat taaactttaa ttcgtgtggt aattggactg ttcaccggcg       300
     atcctaca                                                                308
//
ID   Gypsy-3_DVir-I repbase;    DNA;    INV; 6290 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DVir_;
KW   Gypsy-3_DVir-LTR; Gypsy-3_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6290
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1811-1811 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4058-4537] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1730..4774
FT                 /product="Gypsy-3_DVir-I_1p"
FT                 /translation="MRFLIDTGASKNYIRPHKRLKGVVPVESPFVVHSIHG
FT                 SNNIAEKCKLSMLGCDTYFFLLDSLSTFDGIIGLDLLKQVGAVLCLKKGML
FT                 IFGATSEALQYHKCVSVNHTKNKEVEAPPAVKADFLRVLHRNNKAFADSNE
FT                 ALPYNTAVVATIRTTDENVVYSKLYPYPRGVEDFVVSEVNELLKNGIIRKS
FT                 KSPYNNPLWVVDKKGTDEVGNRNKRLVIDFRKLNLKTVADKYPMPSITMIL
FT                 ANLGKAKYFTTLDLKSGYHQITLAEQDREKTAFSINGGKYEFCRLPFGLKN
FT                 AASIFQRTIDDVLREQIGKSCYVYVDDVIVFSENESDHVRHVDWVLGSLLN
FT                 ANMRVAHEKSQFFKESVEYLGFIVTKDGAKSDPEKVKAIREYAEPTTVFEV
FT                 RSFLGLASYYRCFIKDFAAIAKPISDILKGENGSISKYRSRKVPIQFNDAQ
FT                 RNAFQKLRNILASEDVILMYPDYKKPFDLTTDASAYGIGAVLSQNGRPITM
FT                 ISRSLKDREANFATNERELLAIVWALGKLRHFLYGVRDINIFTDHQPLTFS
FT                 VSESNPNAKIKRWKARIDETGAKLFYKPGKENHVADALSRQNVNALQGSRD
FT                 EPESDAATIHSELSLSYTIDSTEKPLNCFRNQVVLEESRFPLKRNFILFGE
FT                 KTRHLINFTDTVALIETIKAIINPNVVNAFHCTLPILASFQHELVRAFPTT
FT                 KFWYCKNFVADVFDVSDRREIITREHNRAHRAAQENVKQVMTEYYFPKMTK
FT                 LANEVVLNCRICTKAKYDRHPKKQELGQTPLPSQTGEMLHIDIFSTDKKFF
FT                 LTCVDKFSKFAVVQPIASRTIEDTRPPLLVLMNIFPSAKQVYCDNELAFKS
FT                 ETIRSLLLNNYGVSVINAPPLHSTSNGQVERFHSTLLEIARCLKLQRGIVD
FT                 TVDLILQATIEYNNSIHSVVEKKPKDILLDSLPESTHEVRGRIERAQIQQN
FT                 ARVNKMRRNRVFEVGEKVLVKTNRRLGNKLSPLCIEKKVEADLGTTVLIGG
FT                 RVVHKDNLR"
FT   CDS           4860..6290
FT                 /product="Gypsy-3_DVir-I_3p"
FT                 /translation="MSMTTARVTDYSHADYIPIMDGDILLWDSYGYLRHTT
FT                 NLTDYRTMTEETMKLTGMFPQSHMRKLLEIDTGHVLDMLSALDVHHRKVRS
FT                 LDFLGTALKVVAGTPDANDFRKTELTQMQLVTASNRQISINSRMQEKINQL
FT                 TDTVNRIIKSSKEKQADTGHLFETLSTRNRMIITEIGNLMLTLTLEKINVI
FT                 NPTIIDHSDLMNILTDQITGTPITDILKVSNIKVERKDNVISLIIEFPIIS
FT                 KQCRKITIFPVAHNGSVLQLHDNLVADCDGQMLAVANCSQTATATFCKRSK
FT                 SISCAQGLHAGGTAHCQTQPSHLAPVTIVDDGIIVINDRSAILTYDDCTAM
FT                 KIDGTNLVTFSSYATVNGTRYFNRKSVQNRFPAVAASPLLNISGHDSILSL
FT                 PYIHRLSENNLNYIKEVRDSIAVGNTLAISFGIMLLACAVGAGVYWLHRLT
FT                 IKRRNSRKISKILENLNATEDGRSSRGGVVNH"
XX
SQ   Sequence 6290 BP; 1884 A; 1478 C; 1502 G; 1426 T; 0 other;
     ctaattggcg cccaacctaa aaaacccaat accgcgataa aacggtttca aaactccagt        60
     tgtgacagca gcggtggaat tcatcaaaat acacaaatac acaacaatag aatcatgtaa       120
     gtgatttgtg aagtgagaat agaaaatttc gagaacaacg aatacgcaca aattaatttt       180
     gttaaagtaa gaaaaggagt gtctatttct gattgaggaa aaaatttatg agaattattt       240
     tcccattagc ttaacctttt atgtgttgtt cggtttcgta cagaggttta aattcgaatg       300
     agcgactgtg actccgacgt agacgcgcat gaacactacg atagcgacga cagtatttta       360
     gcgaggttaa tagggggatt tggaacattg caggtatcag gttgtgtcgc cccaactgaa       420
     cataatacag aaacagactc agttatggac ccagagcagt tgcgtgcgat aattgaggcc       480
     gcagtgcgga gcgcactcac agcgcaggcg caagaattcg cgaataggga agctacgcta       540
     aggcaagagc ttcaacaaca aattgcgcag gtatcgaata agctaagaaa cacacaacct       600
     tcagtcccgg agtaaaggtt tacagggaag ttgaaatcat agacggggtg gaatgtaatg       660
     agccgctcga cgtggtaaaa tgtcttaccg agttccatgg gactcaagac acttacgtgt       720
     cctggaggca ggccgcgcat gccgcctata aaattttcaa aaaatacgac ggtagttcac       780
     gtcactacca agccaccgca atcattagga gtaaagtgag aggcccggca gacgcggttc       840
     tcgcctcgtt taacacgccg ttaaactttg aggccatcat agcgaggatg gacttcactt       900
     atagtgataa gcggcctatc catgtaattg aacaggaaat gggtacgctt aggcagggcg       960
     gcatgtccat tctacagtac tacgatgagg ttgaaaagaa actcacgtta ctcacaaata      1020
     aagcccatat gtcatatgac agcaatctgg cagcgggaat gtgtgaaaaa ttcaggggtg      1080
     acgcacttcg cgtatttatc tctggattaa aacgcagtct aaccgatgtg ttgttttcgg      1140
     ctcacccctc ggatctaccg acggcactag cgctagccca ggaggtcgag gctaatcacg      1200
     agagatatgc cttcgcgaca agttttgcta gggggcagga agagcgatct cgtccagagc      1260
     agcgcccaca agggcgccag caacaacaac agcaagaaaa aaagcaattc tctcagggtg      1320
     gccagggcaa gaatcctcat ttcaagaagc agaacggcca atccacagac aaagcccaga      1380
     atagagctgg ggccgatgcc ccagttccca tggaagtcga cccttcttct tccaggttta      1440
     ggcaacccac aaacttttcg aattcccagg gctcggctaa gtttaacgcc agccaaggtc      1500
     agggaaataa acgctccgcc ggatcggaac gcgcgacagg ccaaaggagg caaagggtag      1560
     accacgtcca ggcgagcgag gccgagagcg cagggtacgc cgacgcggca caagaggcgt      1620
     cagacgaaca acaagacgaa catagccctg attatgatag cgatagcgct aattttttag      1680
     gggaaggtcc ctgctaccgt tcattcgacg gagaatagcg ggggtagata tgagattttt      1740
     aatcgacacg ggtgcgtcaa aaaattacat cagaccgcac aaacgcctta aaggcgtcgt      1800
     cccggtcgag tcccctttcg ttgtccactc cattcatggg tccaacaaca tcgccgaaaa      1860
     atgcaagtta tccatgcttg ggtgcgacac atattttttc ctactagatt ctttatccac      1920
     ttttgatgga atcatagggc tggacctgct aaagcaggtg ggagcggttt tatgcctaaa      1980
     aaaaggtatg ttaatatttg gtgcgacttc ggaagcgttg cagtaccaca aatgtgtgag      2040
     cgttaatcac acgaagaata aggaagtcga ggcaccacct gcggtgaagg cagatttcct      2100
     gcgagtactt catcgaaaca acaaggcttt tgcggactcc aacgaggcgc tgccttataa      2160
     cacggctgtt gtggccacga tccgtacgac cgacgaaaat gtggtctact caaagctata      2220
     cccctaccct aggggtgtag aggattttgt cgtttcagaa gtcaacgaac tactaaaaaa      2280
     cggtataatt agaaagtcga aatcgcccta caacaatcca ctgtgggtgg tcgataagaa      2340
     aggcacagac gaggtaggca atagaaataa acgtctcgta atagacttta ggaagctcaa      2400
     cctcaagacg gttgccgaca aatatccaat gccaagtatc acaatgatac tggctaatct      2460
     gggtaaagcc aagtacttca cgacgctcga cctaaagtca ggttatcacc agattacgct      2520
     ggcggagcag gatcgtgaga agacggcctt ttcgatcaat ggcgggaagt acgaattctg      2580
     tcgacttccc ttcggtttga agaatgcagc aagcattttt cagagaacca tagatgacgt      2640
     cctgcgggag cagattggaa aatcttgcta cgtttatgta gatgacgtca tcgtcttttc      2700
     ggaaaacgag tcggaccatg tcagacatgt cgactgggta ttagggagcc ttttaaatgc      2760
     gaacatgcgc gtggcgcacg agaagtcaca gttttttaaa gaaagcgtcg agtacctcgg      2820
     cttcatagtg actaaagacg gtgcaaagtc agatccagaa aaggtaaagg ccattcggga      2880
     atatgctgag ccgaccacgg tgtttgaagt aagatccttt ttggggctgg caagctatta      2940
     ccgctgcttt atcaaagatt ttgcagcaat agcgaaacca atctccgaca tcctgaaagg      3000
     ggaaaacgga tccattagca agtacaggtc tagaaaggtc cctatacaat tcaacgatgc      3060
     tcaacgcaac gcgttccaga agcttaggaa catattagcg tcggaagacg tcatactgat      3120
     gtacccggac tataaaaaac catttgactt gaccacagac gcttcagcct atggcatagg      3180
     tgctgtcttg tcgcaaaatg gtcgccccat tactatgata tcccggtcct taaaagatag      3240
     ggaagcaaac ttcgctacca acgagcggga gttgcttgcc atcgtctggg cattgggtaa      3300
     gttacggcac ttcctttacg gggttaggga cataaatatc ttcactgatc accagcctct      3360
     cacgttctcg gtatccgaga gcaatcccaa tgcaaaaata aagcgctgga aagcgcgcat      3420
     tgatgaaaca ggggctaagc ttttctataa gcctggtaaa gagaatcatg tagcggacgc      3480
     gctgtcgcgc cagaacgtga acgccctgca gggtagccgc gatgaaccag aatctgacgc      3540
     ggccacgatt cacagtgaat tgtccctgtc ttacacaatc gattcgacgg agaagccctt      3600
     aaactgcttc cgaaaccagg ttgtattaga ggaatctcgc tttcctttaa aaagaaattt      3660
     catacttttc ggcgagaaaa cccgccattt gataaacttt accgatacgg tcgccctcat      3720
     cgaaacgata aaggccatca ttaacccaaa cgtggttaat gcgtttcact gtactctccc      3780
     aatcttggcc agtttccagc acgagttggt aagagccttt ccgactacga agttttggta      3840
     ttgcaaaaac ttcgtggccg acgtgttcga cgtcagtgat agaagagaaa tcatcactag      3900
     ggaacacaac cgagcccata gggcggctca ggagaatgta aaacaggtca tgacggagta      3960
     ctatttccct aaaatgacca aattagctaa tgaagtggtg cttaactgta gaatttgcac      4020
     gaaagcaaaa tacgacagac acccaaagaa gcaggaactc ggccagacgc cacttccctc      4080
     acagactgga gaaatgttgc acattgacat tttctccacg gacaaaaagt tcttccttac      4140
     ttgtgttgac aagttctcga agtttgcggt agtccagcct atcgcgtctc gaacgataga      4200
     agacacgaga ccacctctgc tggtcttaat gaatattttc ccttcggcta agcaagtgta      4260
     ttgcgacaat gagctcgcat tcaagtcaga gactatcagg tctctgctat tgaataacta      4320
     cggcgtaagc gtgataaatg cgcctcccct tcacagcacg tccaacggtc aggtagagcg      4380
     ctttcacagc actcttctgg agatagctag gtgcttaaag ctccaaaggg gtatagttga      4440
     cacagtcgac cttatcctgc aggccactat cgagtataac aattccattc actcagtggt      4500
     tgagaagaag cctaaggaca tcctgcttga ctcgcttccg gaatccaccc acgaggttag      4560
     aggcaggata gaaagggccc aaatccagca gaacgctagg gttaataaaa tgcgtcggaa      4620
     cagagtcttc gaggtaggag aaaaggtcct ggtaaagacg aaccgcagac taggcaacaa      4680
     gctatcgcct ttgtgcattg aaaaaaaggt tgaagcggac ttggggacaa cggtcctcat      4740
     tggggggagg gtggtccaca aggacaacct ccgttgaatt gaaagcacag tttttttcat      4800
     taccattccg ataacagtag tttcaacatt ttaggattac gttcaccata ctttcaatca      4860
     tgtccatgac aacggctcgg gtgacggact actcgcacgc ggactacata ccgattatgg      4920
     acggggacat tctactttgg gacagttacg gatacttacg tcacactacc aatctcacgg      4980
     actataggac aatgactgag gagaccatga agctgacggg aatgtttcca caatcccata      5040
     tgaggaaatt gctggaaatt gacactggac atgtactgga catgttgtcc gctctcgatg      5100
     tgcaccatcg caaggtaaga agccttgact tcttgggaac agcccttaag gttgtagcgg      5160
     gcaccccgga cgcaaacgac ttcaggaaaa cagaactgac tcagatgcag ctggtcactg      5220
     caagcaacag acaaatttct ataaattcca ggatgcagga aaagatcaat caactgaccg      5280
     acaccgttaa cagaattatt aagtcctcaa aagaaaagca ggccgacact ggccacctct      5340
     ttgaaacctt aagcacacgc aatagaatga taataacaga aatagggaac cttatgctta      5400
     ctttaaccct agaaaaaatt aacgtaataa acccaacaat aatagatcat tctgatctta      5460
     tgaatattct cactgaccaa atcacaggga cccctatcac tgacatattg aaagtatcta      5520
     atattaaggt agagcgtaag gataatgtaa taagtttgat aatcgaattc cctataataa      5580
     gtaagcaatg caggaagata acaattttcc cagtcgccca caacggttct gtgctccaac      5640
     tccacgacaa tcttgtggcc gattgcgacg gacagatgtt ggccgtagcc aattgctcac      5700
     aaactgcgac tgccacattc tgcaagcgtt ccaagagcat cagttgcgca caaggcctcc      5760
     atgcaggggg tacagcccat tgccaaacgc agccgagtca tcttgcccct gtcaccatag      5820
     tggacgacgg catcatcgtc attaacgatc gtagcgcaat actcacctac gacgattgca      5880
     ctgcgatgaa gatagatggg acaaacctcg tcaccttctc gtcctatgcc accgtaaatg      5940
     gcacgcgata cttcaatcgc aagagcgtgc aaaatcggtt cccggcggta gcggcatcac      6000
     cgttgcttaa catcagcggc catgactcga tactcagcct tccctacatt caccgcctga      6060
     gtgaaaacaa ccttaactac atcaaagagg tcagagacag tattgcagtc ggaaatacat      6120
     tggcgatttc cttcggcata atgctgttgg cctgtgctgt gggggctgga gtctactggc      6180
     tccataggct gacaatcaag cgtcgaaact cccggaagat ctcgaagata ttggaaaact      6240
     taaatgcgac cgaggacggt cgatcctcga gagggggagt agttaaccac                 6290
//
ID   Gypsy-3_DVir-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DVir_;
KW   Gypsy-3_DVir-I; Gypsy-3_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-361
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1812-1812 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 361 BP; 91 A; 88 C; 94 G; 88 T; 0 other;
     tgactattgg tatgtgctga cccagcgttc tggggaagcc aatgaccaga gtcatgtggc        60
     gacggatatg tcgcaactat gtcaccggcc gcgacggtca tccgacaccg cacacgaggc       120
     gctaacgctg cacttttgcg agagcggcgg cagcggttct acagcagcaa cggcggctct       180
     ggggcagcga cggcggctct gcaggcattg cttagattga taaagattgt attttttagt       240
     ctaagttagg aaacaataaa agcgcgacgt atcgtccctt aaagtctccc gttagttaac       300
     tcatttttta tatgcatttt tacatgcaac cggcaaaccc aaagttgcag acattaatgc       360
     a                                                                       361
//
ID   Gypsy-3_DWil-I repbase;    DNA;    INV; 4728 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DWil_;
KW   Gypsy-3_DWil-LTR; Gypsy-3_DWil-I.
XX
NM   Gypsy-3_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4728
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
RN   [2]
RP   1-4728
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..4714
FT                 /product="Gypsy-3_DWil-I_1p"
FT                 /translation="MSKLEDFVNVQEALKTEKKSNITLFHKFIYEEEGDRA
FT                 NRQRLRKFEGFDFDCNSDLYKSKVSYVEKNLTNNDLVIICNVLGLSHDKSN
FT                 LTSHLFRNLQAVNLLADLDTENDQNEDDDDECERDGDVGNMQDEDEMLSVV
FT                 SDETNFRTAATNENMRNKTNRANSTVVANNIDTQGAVNVNMPPPRFALSFR
FT                 DVEDSLRPFHGDENLSVEVWIEDFEDMADLMQWDSLQKFVFAKRAIKGLAK
FT                 MFILSERGIKNWSTLKESLLNEFKTVINSAELHKQLSERKIKKGESVQEYL
FT                 LKMKEMASRGNIENSALMQYVIDGINDLSMNKAILYNANNLKEFKEKIKCY
FT                 EKMREKSSNQKSESKNVQIKKESVMKYENKESGIKCYNCGQKGHISENCDN
FT                 KSKGRKCFGCNNFGHIAKDCPNKKPENSTDVRNTNKISADHMFMCKEVSIN
FT                 NEKCIALLDTGSKYNIVTETIYNRLKKPKLAKVDKVLYGFGDKKRVVPIGS
FT                 FTGRLCVSQEQFDLVFLVVSSEFLDDEVILGEDFCKQAEIKINRDGVQIGK
FT                 YNDETELSSVMRIKVENDEIDIDSNASKSTKCEVNELIKNYKPEKLKSTNV
FT                 EMRIVLKDDSPIYSRPRRFAFAERCIIDDQVDQWLKDEIIEQSESEFSSPV
FT                 VLVKKRDGTPRLCIDYRRINKVIVKDHFPLPLIEDQLDRLQGATVFSTIDL
FT                 KNGFFHVDVEKESRRFTSFVTHNGQYQFLKVPFGLTNSPGVFQRHVNAIFR
FT                 DLTRAGTAIPYVDDIIIPGKTEEEAVSNLRNVLKRCEEYGLVINLKKCCFL
FT                 KREIEFLGHTIKNQKICISDAKTKAVNKFPMPMNQKQLQSFLGLVGYFRKF
FT                 IADFSIIAKPLTDLLKNDANFRFNESQIKSFNLLKKLITQKPVLQIFNPKF
FT                 ETEVHTDASIDGFGAILLQKLPDDKELHPVYYMSKKTTEAERKFTSYELEI
FT                 LAVVEAFRKFRVYLLGMHFKVISDCNAFAKTMDKKDVCTRVARWILEIQEF
FT                 DFDVEHRAGNRIRHADALSRYPVMIITEDYIHSKLKNAQAQDDQLKAIIDI
FT                 LAQKTSHNNYFMKAGILYKLVDDEELIVVPSTLQREIIKHAHERGHFSVKK
FT                 TKEIIAKEYYIPKLDEKIQHQIRCCIPCLTLNRKLGKKEGELHPLPKEELP
FT                 FQTFHIDFLGPLESTHKQYKHILAVIDGFTKFCWLYPTKTTSTKEVITRLQ
FT                 QQSLIFGNPVQIISDRGSAFTSDEFKEYCKAENIELHAVTTGLPQANGQVE
FT                 RLNAVIISVLSKISIEDPSKWYKFVGKVQQTINSTYSRSTHSTPFELLIGT
FT                 KMHTKDDLKLKEIIHDEMIQIFNDNRDDLRNIAKQQILRMQEENKKTYNLR
FT                 RRPASIYKVGDLVAIKRTQLGGGLKLKPKYLGPYRITMVKARDTYDVVKDT
FT                 LFNDGPRRTTTCAAYMKPWVPCDIDDQDAFEANAY"
XX
SQ   Sequence 4728 BP; 1733 A; 781 C; 995 G; 1219 T; 0 other;
     aatatggggg ctcaacctac aaaataggca tgactcaacc tacaaagaag gcatggctca        60
     acttataaag aagtaaaaaa gtaagatcag tgagtgagaa agagacaaac atacacaaaa       120
     cgacgcaaca gtggaatcaa acgaccagaa aaaaaaacag cgcgaaaacg aataagaatt       180
     agcatcaaac gacgaaaaat tggcggctaa cgacgaaaaa gcggcaaaga aacggtgaaa       240
     aagttttcaa cgaacgacgc gaaagtgttt gaataccaca gttatctggt gacgtggcaa       300
     acgacgtata tatacatata catatttgta tgtacaatat tagtgtgtgt gcgtaagaga       360
     aagaactatg agcaaacttg aagactttgt gaatgtgcaa gaggcactga aaactgaaaa       420
     gaaatctaat attacattgt ttcacaagtt tatatacgaa gaagaaggcg atcgtgcaaa       480
     tcgccaaaga ctaagaaagt ttgaagggtt tgattttgat tgcaacagcg atttatataa       540
     aagtaaagtg tcttatgtgg aaaagaattt aacaaataac gatttagtga ttatttgtaa       600
     cgttttgggt ttatcgcatg ataaatcgaa tctaacttcc catttatttc gcaatttgca       660
     agctgtaaat ttgctagctg accttgacac agagaatgat caaaacgaag atgacgacga       720
     tgagtgcgaa agagatggag atgtaggcaa tatgcaagac gaagacgaaa tgttgtcagt       780
     agtgagcgac gaaacgaatt ttagaacagc tgcaacaaac gaaaatatgc gaaacaaaac       840
     gaatagggca aactctacag tcgtggccaa caatattgat acgcaaggtg cagtgaatgt       900
     caacatgcca ccaccgaggt tcgctttgag ttttcgggac gttgaagact ctttacgacc       960
     tttccatggc gatgaaaatt tatcagttga agtatggatt gaggatttcg aagacatggc      1020
     tgacttgatg caatgggata gtttacaaaa atttgttttt gctaaaagag ctattaaagg      1080
     acttgctaaa atgtttattc tgagtgaacg cggaattaaa aattggtcga cattgaaaga      1140
     atcactttta aatgaattta aaacagtaat aaatagcgcg gagttacata agcaattgtc      1200
     agaacggaaa ataaagaaag gtgaaagtgt tcaagaatat ttgttgaaaa tgaaagagat      1260
     ggcatcacgg ggtaatatag agaacagtgc tcttatgcag tatgtaattg acggaattaa      1320
     tgacttgagt atgaacaaag caatattgta caatgctaat aacctaaaag agtttaaaga      1380
     gaaaataaaa tgttatgaaa aaatgcggga aaagtcaagt aatcaaaaaa gtgagtctaa      1440
     gaacgttcaa atcaaaaaag aaagtgtaat gaaatacgaa aataaagaaa gtggtataaa      1500
     atgctataac tgtgggcaaa aaggacatat atctgagaat tgtgacaata agagtaaagg      1560
     aagaaagtgt tttggttgca ataattttgg tcacatagca aaagactgtc caaataaaaa      1620
     gcctgaaaat agcacagatg ttcgtaatac taataaaata tcagctgatc atatgtttat      1680
     gtgtaaagaa gtatcaatca acaatgaaaa gtgtatagcc ttgcttgata ctggtagcaa      1740
     atataatatc gtaacggaaa caatttataa tcgtttgaaa aaacctaagc tcgctaaagt      1800
     tgataaagtt ctatacggtt tcggagataa aaagagagtg gtacctatcg gttcgtttac      1860
     gggaaggctt tgcgtaagcc aagaacagtt tgatttggtt tttttagtgg tatcatctga      1920
     attcctagat gatgaagtga ttttgggaga agacttttgt aagcaagccg aaataaaaat      1980
     caatcgcgat ggcgtacaaa tcgggaaata taatgatgaa acggaattaa gttcggtaat      2040
     gagaataaag gtcgaaaacg acgaaattga cattgactca aatgcatcga aaagtacaaa      2100
     gtgcgaagtg aacgaactta tcaaaaacta taagccggaa aagttaaaat cgacaaatgt      2160
     tgaaatgcgt attgttttaa aagacgatag tccaatttat tcgagaccac gcagattcgc      2220
     ttttgctgaa cggtgcataa tcgatgacca agtcgatcag tggctgaaag acgaaataat      2280
     agaacaatcc gagtctgaat tcagcagtcc ggtcgtatta gtaaaaaaac gcgatggcac      2340
     tccacgtctg tgcattgact acagaagaat aaacaaggta atagtaaaag accattttcc      2400
     attacccctg attgaagatc aattggatcg gctacaagga gcaacggttt tcagcacaat      2460
     cgatttaaag aatggatttt tccatgtaga tgttgaaaaa gagagtcgaa gattcacctc      2520
     gttcgttaca cacaacggac agtaccagtt tttaaaagtt ccttttggat tgacgaactc      2580
     ccctggggta tttcagagac acgttaatgc catttttcgt gatttaaccc gtgctggtac      2640
     ggctatccca tacgtcgacg acattataat ccctggtaaa actgaagagg aagccgtctc      2700
     caatctgaga aatgttttga agcgatgtga agaatatggt ttagtcatta acttaaagaa      2760
     atgttgcttt ttgaagagag aaatagaatt tttggggcat actataaaga atcagaagat      2820
     atgtatctca gacgcaaaga ccaaagctgt aaacaaattt cctatgccga tgaatcaaaa      2880
     gcagctccaa agttttcttg gcctggttgg ttattttcgc aagttcattg cagatttttc      2940
     gattatagcc aagcctctta ctgatttatt aaaaaacgat gcaaatttta gattcaatga      3000
     gagtcagata aaatctttta atttgctaaa aaaattgata acacagaaac ctgttctgca      3060
     aatatttaac cccaagtttg aaacagaagt acatacagac gcatcgattg atggcttcgg      3120
     agcaatttta ttacaaaagt tacccgatga taaagaattg caccctgtat actacatgag      3180
     caaaaagacg actgaagcgg aaagaaaatt cactagctac gaattagaga ttttggcggt      3240
     agttgaagca tttcgtaagt tccgagttta ccttctaggt atgcatttta aagttataag      3300
     cgattgtaat gcgtttgcaa agacgatgga taaaaaagat gtgtgcacta gagtcgcacg      3360
     atggattctt gagatccaag aatttgattt tgatgttgag caccgtgcag gaaatcgtat      3420
     acgtcatgcg gatgcgctta gtcgctaccc cgttatgatt ataacagaag attacataca      3480
     cagtaaatta aagaatgccc aagcacaaga cgaccaattg aaggccataa tcgatatcct      3540
     tgctcagaaa acttctcata acaactattt tatgaaagct ggcatacttt ataagttggt      3600
     tgatgatgaa gaactaattg tagttccctc tactctgcaa cgggaaatta ttaagcatgc      3660
     tcacgaaaga ggtcactttt ctgtgaaaaa gacgaaggaa ataattgcaa aggagtacta      3720
     tatcccaaaa ttagatgaga aaatacaaca ccaaataaga tgctgcattc catgcctaac      3780
     acttaatcga aagcttggta aaaaagaagg agaactgcat ccactgccga aagaagaact      3840
     gccttttcag acgttccaca tcgattttct tggaccctta gagtcaactc acaagcagta      3900
     taagcacatt cttgcagtta tcgatggctt tacaaaattt tgctggttgt acccgacgaa      3960
     aacgacatct acgaaggaag taatcacaag actacaacaa caaagtttaa tttttggaaa      4020
     tccagttcaa attatttctg acagaggttc tgcgtttact tctgacgagt ttaaagagta      4080
     ttgcaaggca gaaaatatcg aacttcacgc agttacgact ggtcttccac aagcgaacgg      4140
     acaagtcgaa cgccttaacg ctgttattat atccgtgttg tcaaagattt cgatagaaga      4200
     ccctagcaaa tggtataagt ttgtcggcaa agtacaacaa acgattaact caacgtacag      4260
     cagaagcaca cattcaacgc cgttcgaact actgattggt acaaagatgc acacaaaaga      4320
     cgaccttaag ctgaaagaaa taatacacga tgagatgatt cagattttta acgacaacag      4380
     agatgatcta cggaatatag cgaagcagca gatccttcgt atgcaagaag aaaataagaa      4440
     gacctacaac ttacgtcgca gacctgcttc catatacaaa gtcggtgatc tggtagctat      4500
     taaaagaacc caacttggag gaggtttgaa gctgaagccc aaatatttag gtccgtaccg      4560
     cattaccatg gtaaaggcca gagatacata cgacgtggtc aaagatacat tgttcaacga      4620
     tggtcctagg cgaactacga cttgcgctgc ctatatgaag ccgtgggttc cctgtgacat      4680
     agacgaccag gatgcattcg aggcgaatgc atactaggat ggccgagt                   4728
//
ID   Gypsy-3_DWil-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   scaffold_180632;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_DWil_;
KW   Gypsy-3_DWil-I; Gypsy-3_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (04-MAR-2011).
XX
DR   Genome; scaffold_180632; Positions    9258    9502.
XX
SQ   Sequence 245 BP; 103 A; 40 C; 53 G; 49 T; 0 other;
     tgtgggattg ggtctggcaa ctctgctgag cggggcgaat tgagctaaag acgagcgaaa        60
     gacgggcagt cgaaccgaag agacgagcga aagcggttgc aaaaagacga aagacgtaac       120
     gacgcgaagc agtaaagacg actaatttcc aactaaatct aattaaaata atcaaataaa       180
     tagttttaca ttaaaataaa ctaaaatact acaaataaat atattaaata ggacaaattc       240
     ctaca                                                                   245
//
ID   Gypsy-3_FoCa-I repbase;    DNA;    INV; 4222 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4222
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2572-2572 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..4097
FT                 /product="Gypsy-3_FoCa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADKASVFQVCPPEQFSFSSPSDWPRWKRRFERFRIA
FT                 SGLVNKTEVEQVNSLIYFMGDQADDILLSFGLSSDDQKKFDTVLAKFEAHF
FT                 IVKRNTIYERSRFNSRVQENGESVDEFITSLYSLSEYCEYGQLKDELIRDR
FT                 IVVGVRDRHLAEKMQLDESLTLEKAVKMSRQHETVKRQQRDLRGETTTTTN
FT                 LARVGAQPEKEKKPNSKTKSVKSSSSDSSKNCKFCGRTHEMKKEVCPAWGK
FT                 DCKTCGKKNHFSKLCKSKEGTVKVNYVDGEVRDREGGFVGSIRTIGFLETA
FT                 QSRDSRWSSLVKVDNAEILFKLDPGADVTVIPLTLFRQKWKSRQLDHPTRS
FT                 LNGPDGSSLNSVGSFMCELSHGKLKVNETVYVIRGLQRPLLGLRACEDLNL
FT                 VRRVDRVWNDEVPKSAENPAHVEKEFPMLFSGLGKIDHPYTIKLKPDAVPY
FT                 AIHCPRRVPLPLMDKLKEKIDEFLRDDVIEPVDEPTEWCAPVVIAPKSNGD
FT                 IRVCVDLTKLNRNVEREFHMMPVVEHTLGQISGAKYFTKLDANSGFFQIVL
FT                 SPESRRLTTFLTPFGRYCYKRLPFGITSAPEVYQKRMSEILRGRICVVHHD
FT                 DILVWGKTMEEHDARLRDVLXRLRDAGVTLNPAKCEFGVTTVKFLGHLLDE
FT                 NGIRPDPAKVEGIAKMSRPTDVPGVRRFMGMANYLGRFVPRMADVSQPLND
FT                 LLRAKNEFVWGPTQEKAFQKIKKILTEEPVLALFDVKKETVVSADSSSYGM
FT                 GACLLQRQDDGELRPISYASRTLSDAEQRYGQIEKEALASTWGCERFRDFL
FT                 AGSHFLIETDHKPLLQILVSKNLDDLSPRLQRFRLRLMRYSYDVXYVPGKL
FT                 LYTADTLSRQPLDHKGDVEFEEEVVAHVCHIISQLPVRDEFLSRIWKAQTE
FT                 DSLLKEVSLLCNQGWPEKTPVNADLKKFWNSRYELSVSNGLLMKGCRLVIP
FT                 SSMQEELLGRLHAGHMGVVKCRARARESVWWPGISEEIAEVVRKCPICVKE
FT                 RGERHEPLIPSEFPSRPWQRVAMDLFKSHGKWFIIITDYYSRYPEVYQLLN
FT                 QTAXCVINCCKAVFSRHGVPEEVMSDNGPQFAPVDSSEFRKFSREWGFIAT
FT                 TSSPRYPQSNGFVEAGVKIVKNLLKKNSDWYAALLEYRATPLANGYSPSDL
FT                 LMSRRIRSLLPMNPTRLVPISVDXEDLNSKEELRRSRQKKDYDSHHRVQPK
FT                 EDLQPEEVVWVKDLRTWGKVLENANAPRSLIVDTPRGKFRRNSLALTRAHT
FT                 NDLPEXPAPDLDCPSQSFVDGQNTKDPPEQNQDRRPRDQASRNDGNYVTRS
FT                 GRVVKPVQRLLCEK"
XX
SQ   Sequence 4222 BP; 1101 A; 976 C; 1093 G; 1036 T; 16 other;
     tggtggcagc gggtcagaac tcccgtcgtg tcgaaaaggt gacttatcag tgatttctgt        60
     gaggggaagt ttattgcggt gtctgcacgt tgaactatag tactactctg cgcatagaga       120
     tggcagataa agcgtcagtg tttcaagtgt gcccacctga gcaattctcg ttctcgtccc       180
     cctcagactg gcctcgatgg aaacgtcggt tcgaaaggtt ccggatcgct tctggcctag       240
     tcaacaagac tgaagtggag caagtcaact ctcttatcta ctttatgggc gaccaggcgg       300
     atgatatctt actatcattt gggctctcca gtgacgacca gaagaagttc gacaccgtcc       360
     tcgccaagtt tgaagctcac ttcatcgtta aacggaacac aatctatgag cgttcgcgtt       420
     ttaattctcg cgttcaggag aacggagaaa gtgtcgacga gttcatcact tcgctatact       480
     cactttctga atactgtgag tacgggcagt tgaaggacga actgattcgt gacagaattg       540
     ttgttggggt gcgtgatcgt catctggccg agaagatgca gttggacgag tcgctcactc       600
     tggagaaagc tgtgaagatg tcccgtcagc atgagaccgt gaagaggcag caacgagatc       660
     ttcgtggcga aacgactact actactaatc ttgcaagggt tggggcccag ccagagaagg       720
     agaagaagcc caactccaag acgaagtctg taaaatcttc gtcgtccgac tcctccaaga       780
     actgcaagtt ttgtgggagg acccatgaaa tgaagaagga agtctgtcca gcatggggga       840
     aggattgcaa gacctgcggc aagaaaaatc acttctctaa actgtgcaaa agtaaagagg       900
     ggactgttaa agtgaattat gtggacggtg aagtgcgcga tcgtgaaggt ggttttgttg       960
     gatccatcag aaccatcggc tttttggaaa cagcccagtc gcgtgactct cgctggtcat      1020
     ccctggtgaa ggtggacaac gccgaaatcc tcttcaagct cgaccctggg gctgacgtca      1080
     ccgtgattcc actcactctt ttccgtcaaa agtggaaatc tcgccaattg gatcatccga      1140
     cgcgatcact gaatggaccg gatggatcat ctctgaattc tgtgggaagt tttatgtgtg      1200
     aactgagcca tggaaagtta aaagtgaatg aaactgttta tgtgattcga gggctgcagc      1260
     gaccactgct aggactgcga gcctgtgaag acttgaatct tgttcgtcga gttgaccgtg      1320
     tgtggaatga tgaggtgccg aagtcagcag aaaatcctgc ccacgttgag aaggagtttc      1380
     cgatgctctt ctcgggtctt ggaaaaattg accaccccta cacgatcaag ctcaaacccg      1440
     acgcggtccc gtacgcgatt cactgcccaa ggagggtgcc actcccacta atggacaagc      1500
     tgaaagagaa gattgatgaa tttctccgcg acgacgtcat cgaacctgtg gatgaaccga      1560
     ccgaatggtg tgctcctgtc gtcattgcgc cgaagtcgaa tggtgacatc agagtttgtg      1620
     ttgatctaac aaaactcaac cggaatgttg aacgagagtt tcacatgatg cctgttgttg      1680
     agcacacgct tggccagatc tctggagcca agtactttac gaaactggat gcaaatagtg      1740
     gatttttcca gattgtcctc tcaccwgaat cgagacgact sactacattt ctaaccccgt      1800
     ttggacgcta ttgctacaag agattaccgt ttgggatcac ctcagcgccg gaagtttacc      1860
     agaagaggat gtcagagatt cttcgcggtc gaatctgtgt agtgcatcat gacgatattt      1920
     tagtgtgggg gaagacgatg gaggagcacg acgcaagact tcgtgacgtt ctcawgagac      1980
     tgagggatgc wggwgtcacc ctcaacccag ccaagtgtga gtttggagtg accaccgtca      2040
     agtttcttgg tcatctcctc gacgagaatg ggattcgccc tgacccagcg aaagtggagg      2100
     gaatcgccaa aatgtcaaga cccacggatg tgccgggtgt gcgaagattt atgggtatgg      2160
     ccaattacct aggaagattt gttcccagaa tggcggatgt gagccagccc ctgaatgacc      2220
     tgcttcgggc caagaatgag ttcgtgtggg gtccaaccca agagaaagcg tttcagaaga      2280
     twaagaaaat cctgactgaa gagccagttc tcgctctttt tgatgtkaag aaggagactg      2340
     tcgtgtcggc tgacagcagt tcctacggaa tgggtgcgtg tctactccag cgccaagacg      2400
     acggtgaact acgacctatt tcctacgcct cccgtactct ctccgatgct gagcaacggt      2460
     acggacagat cgagaaagaa gcccttgcca gtacttgggg ctgcgaacga tttcgagatt      2520
     ttttggccgg ttctcatttc ttgatcgaga ccgaccataa acccctacta caaattctcg      2580
     tctcaaagaa tttggatgat ctctctccac gacttcagcg ttttcgtcta cgcctgatga      2640
     gatactctta cgacgtgamg tacgtgcctg gaaaattact ctacactgca gacaccctga      2700
     gtcgacaacc gctagaccac aaaggagatg tggaattcga agaagaagtg gtggcccacg      2760
     tgtgtcacat catctctcaa ctgcctgtac gagatgaatt tttgagtcgg atttggaaag      2820
     ctcaaactga agactcactg ctgaaagaag tgtctctcct ctgcaaccaa ggctggccag      2880
     agaagacacc agtgaatgct gatctgaaga agttctggaa ttcaagatac gaactgtctg      2940
     tcagcaacgg actcctcatg aaaggatgca gactggtcat cccttcgtcg atgcaagagg      3000
     agctcttggg acgacttcat gctggtcaca tgggagtagt gaagtgtcgt gcccgtgccc      3060
     gtgaatctgt gtggtggcca ggaatttctg aggaaattgc agaagtagtg cggaagtgcc      3120
     caatctgcgt gaaggaaaga ggagagcgac atgagcctct gattccgtcg gaattcccat      3180
     ctcgaccctg gcagcgcgtt gcaatggacc tcttcaaatc tcatgggaag tggttcatca      3240
     tcatcacaga ctactattct cggtatcckg aagtatacca attgctcaat caaacagcaa      3300
     sttgcgtcat caattgctgt aaagccgtgt tctctcgcca tggtgtacct gaagaagtaa      3360
     tgagtgacaa tggacctcag tttgctcccg tcgactcgtc ggaattccgc aagttctctc      3420
     gtgaatgggg attcatcgcg acaacttcaa gcccgaggta cccgcaaagc aatggatttg      3480
     tagaagctgg agtgaagatt gtgaaaaatc tgctcaagaa aaattcsgat tggtacgctg      3540
     cgctcctaga gtaccgagca actcctctcg cgaatggata cagtccaagc gacttgctta      3600
     tgagtcgccg gatcagatct ctactgccaa tgaatccaac tcgacttgtg ccaatctcag      3660
     tggacaasga agacctcaac tcgaaagaag agctgcgacg gtcaagacag aagaaggact      3720
     atgattctca tcatcgtgtc cagccgaagg aagacctcca acctgaagaa gttgtctggg      3780
     ttaaagacct tcgaacctgg ggaaaagtgt tagagaatgc taatgctccg cgttctctca      3840
     ttgtggacac accgcgagga aaatttcgac gcaactcctt ggcgctgact cgtgctcaca      3900
     cgaatgatct ccccgaamck cctgctccag atttggactg cccatcccag tcattcgtcg      3960
     atggacaaaa tacgaaggac ccacctgaac agaatcaaga tcgccgacct cgggatcaag      4020
     cttcaaggaa tgatggcaac tacgttacgc gttctggtcg tgttgtcaag cctgtgcaac      4080
     gtctcttgtg tgaaaagtga tagttgttaw gaatatgcat ttgatttaca tatgaaatga      4140
     atttatgatt gtaattgatg tcctttgttt attgattttt gtcctttatg tatkaatgat      4200
     ttctttagct tagaaagggg gg                                               4222
//
ID   Gypsy-3_FoCa-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-224
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2578-2578 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 224 BP; 56 A; 52 C; 45 G; 71 T; 0 other;
     tgtggtgtaa ggtatgtcat agagtatagt taagtctcat atttctgtat ctctgactgt        60
     gctcgtctca cttgcccagt cagtcaccaa ctgctacttg gagaataaag acatgtatat       120
     agtaactctc cagtgcctgc tctctgactg atttcgacat cggtgttaat ggtgtgtcga       180
     tggccaacgc taccttaata gcatctcaca cgcattacac taca                        224
//
ID   Gypsy-3_HeAr-I repbase;    DNA;    INV; 6492 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-6492
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5553-5553 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1056..5633
FT                 /product="Gypsy-3_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKHRQKSRHVDRNSSQQERNARTQPRSRTPAVRRSR
FT                 SRERRSRRSKRASKRSCEQRQLRSPSVHEVGENSRTTHKGLSKRRRVQSQS
FT                 SLSSSEERSPRRKRSANLSNLDIVEKLLNVIASKNTTDVDKFPVLNVVPDF
FT                 DPMCREQTVETWIHKVEECAQIYGWSDKQIVHYAMPKLCGVAKTWYQGLPS
FT                 LLHSWSEWKLRLTESFPSQTNYAETLTQMLNKRAKFGESLEEYFYTKINLL
FT                 NRCKIYGKDAVDCIIYGIDDRGVRLGAQGAQFSEPEQLLKFFKSVKINQPI
FT                 GNDPKNKNTDRQEKKPAQKSDNDKRPKPQSLKCYNCNETGHPFFRCSKPTI
FT                 RCNNCNLRGHLADNCPNKTNQAHKANVESQSVMEVHSTDNINAKYKIPIRI
FT                 NGKTLLSHIDLGSECTLIRLTDAISLGIQWKTESLPILRGLGNIPYRPVGR
FT                 AFVDIDVQDIIEENVEILIVTDDMINDPVLLGHTYTERPQIQITKTNTDII
FT                 VKRCQVHDDSKLILLTFQSNNLKPHTTNAIKVKSDTIFCGRIYVHGTIRGR
FT                 PGYEYFLLPGEYDLSLGLGTLIIQNICDKDINMPIDTLVTRARVASTLDVP
FT                 NTYNILDIQLTDEALKCGNITQQQKFELVKLLEKYRKCFSSNLHELGYTTS
FT                 VEMEIKLKDSEPVVYRPYRLSYSDRQLVQSMIQEMLESGIIRESSSPYASP
FT                 IVLVQKKSGEKRLCVDYRALNRKTVKEHFPLPRIEDQLDLLAGNTMFITLD
FT                 LASGYYQIPIAEESRERTAFITPDGQYEYNRMPFGLVNAPSVFQRAINKVL
FT                 AKVRNKHVLIYMDDVLIPGRSFEDCLKLLEEVLLLLKSSGLTLKLEKCKFC
FT                 FDKIEYLGFEVSADGIRPGSLKTDAVSKFSVPQNQHDVRRFIGLASFFRRF
FT                 VKGFATIARPLTELLKKDAKWRWTEVEQNSFETLKQNLVQRPILALYDPRA
FT                 ETQLHTDASKIGIAGILMQKGETGVFHPVAYYSRQTTTDEQKLHSYELETL
FT                 AVIASLNKFRVYLLGIKFTILTDCNSLRTTLTKRDLIPRIARWWIQFQEYD
FT                 CSIEYRPGERMAHADALSRCPIPDNDCETRVLDVLNVGSQDWIATVQDNDD
FT                 ETKRIKNVLTDPQSQNAADIIKNYKIKNDKLYRIIEPGVLRWVVPKGVRWQ
FT                 ILRANHDEVGHFGFEKTLERIKATFWFPKIRKFTKKYVNACLECAHHKVPS
FT                 GSKAGFLHPIPKTEIPFHTIHADHLGPFNRSKRGNCYILVIIDSFTKYINI
FT                 TPVRNTKSTTSIRVLKEHISYFGTPTRLITDQGTSFTGKKFQDFVKSLGIK
FT                 HIFNAVATPRANGQVERYNRTILAALGSMSHEKPKGNWDEYLPDIQLGINT
FT                 TIHSTTKKTPTELLFGYRATHPSVGNLNEIIEDVGADVSNLESLRETAKTL
FT                 IEVQQDKDKARYDLHRKKGNNFVVGDLVRVLRNVPSQDGQSRKLEAKCRGP
FT                 YRIKKILPNDRFVIEDTPLTKKGKTYEAIVALDKLFPWLSFGSAYDDMSST
FT                 DEDDEVQCNE"
XX
SQ   Sequence 6492 BP; 2104 A; 1325 C; 1308 G; 1755 T; 0 other;
     tatcagaagc caggataaaa gtagaactaa aagttctact taccacgtcc acagaagtga        60
     aaacgtaagt aaaacttttg ttttttttct aatctgccta cctactggca atgtgaagaa       120
     ggattttgcc cattgtacag ctaactagat tatcgtttaa actagtgtag ttgtattata       180
     aataatttta tgttcatgaa atgcaagtgt aaacagagtt tcattggttt gttcgttccg       240
     ttttatcacg acagtgttat caagacttac atgtacgcac atacacatgc acataacctt       300
     gccagggcta ctccctggag gttatactca catgtacgca catacacatg cacataacct       360
     tgccagggct actccctgga ggttatactc acatgtacgc acatacacat gcacataacc       420
     ttgccagggc tactccctgg aggttatact cacatgtacg cacatacaca tgcacataac       480
     cttgccaggg ctactccctg gaggttatac tcacatgtac gctcatacac atgcacgtaa       540
     ccttgccagg gctactccct ggaggttata ctcacatgta cgcacataca catgcacata       600
     accttgccag ggctactccc tggaggttat actcacatgt acgcacatac acatgcacat       660
     aaccttgcca gggctactcc ctggaggtta tactcacatg tacgctcata cacatgcacg       720
     taaccttgcc agggctactc cctggaggtt atactcacat gtacgcacat acacatgcac       780
     ataaccttgc cagggctact ccctggaggt tatactcaca tgtacgcaca tacacatgca       840
     cataaccttg ccagggctac tccctggagg ttatactcac atgtacgcac atacacatgc       900
     acataacctt gccagggcta ctccctggag gttatactcg cacatgaaca taccaaaagt       960
     catgcaaaat acgcctacag atgtaagtta gtaaagttaa ttatgaagta tctaatacac      1020
     acaatcgtaa gtttcaggca atacaattgg gaataatgcc gaagcacagg caaaaatcca      1080
     ggcatgtgga cagaaacagt tcgcagcagg aaaggaatgc taggacgcag ccgaggtcca      1140
     gaactccagc cgtgcgtcgt agcaggtcac gtgaacgacg gtcgaggaga agtaagcggg      1200
     cgagtaagcg atcttgtgag caacgacagc tccggagccc ttcagtgcac gaggtaggag      1260
     agaattcaag aactactcat aaaggcttat ctaaaagacg tagagtacaa agtcaatcat      1320
     cgctgtcaag ttcggaggaa aggtcgcctc gtaggaagag aagtgctaat ttaagtaatc      1380
     tagatatagt tgaaaaactt ttaaacgtta tagcaagtaa aaataccact gacgtagata      1440
     aattccctgt cttaaatgtt gtacctgatt tcgacccaat gtgccgtgag cagactgtgg      1500
     agacctggat acataaggtt gaagaatgcg ctcagattta tggatggtct gataaacaaa      1560
     tagtccatta tgcaatgccc aagctctgcg gcgttgctaa aacctggtat cagggtctcc      1620
     cctctctgct acattcctgg tctgaatgga aattaaggtt aacggagtct tttccttcac      1680
     aaactaacta tgcggagaca cttactcaaa tgttgaataa gagagctaag tttggcgaat      1740
     ctcttgagga atatttttat actaaaatta atctgctaaa ccgttgcaaa atctatggta      1800
     aggatgcagt cgactgcata atatacggca tagacgatag gggtgttcgc ctaggtgctc      1860
     aaggggcgca attctctgaa cccgaacagt tgcttaagtt ctttaaaagt gtaaaaatta      1920
     atcaaccgat tggtaacgat cctaaaaata aaaatacaga tcgacaggaa aagaaacctg      1980
     ctcaaaaatc ggataatgat aaaaggccta agccacaaag tttaaaatgt tataattgta      2040
     acgagactgg tcatccattt ttccgttgtt ctaaacctac aattagatgc aataattgca      2100
     atttgagagg tcatttagca gataactgcc ctaataaaac gaaccaagct cataaagcca      2160
     atgtagagtc ccagtctgta atggaagtac attcgactga taatataaat gctaagtaca      2220
     aaattccaat tagaattaat ggcaaaacac ttttgtctca tattgatctt ggaagcgaat      2280
     gtacccttat tagactgact gacgcgataa gtctaggaat tcaatggaaa actgagtccc      2340
     tgcctatttt gaggggatta ggtaatattc cctaccggcc agtaggacgt gcgttcgttg      2400
     atatagatgt acaggacata attgaagaaa atgttgagat tttgattgtg actgacgata      2460
     tgattaatga cccggtatta ctaggacaca cgtacactga acgtccacag atacaaataa      2520
     caaaaactaa tacagatata attgttaagc gctgccaagt tcacgatgac tccaagttga      2580
     tattactgac ctttcagtct aataatctaa aaccacacac cactaatgct ataaaggtaa      2640
     agtcagatac aattttttgc ggcaggattt acgtacacgg gacaattaga ggacgcccag      2700
     gttatgaata ttttcttctt cccggtgaat atgacttaag tctaggatta gggacattaa      2760
     taatacaaaa catatgtgac aaagacataa atatgcctat agatacatta gtgacacgag      2820
     ctcgggtagc gagcactcta gacgtaccaa acacttataa tattttggac atacaattaa      2880
     ctgacgaagc tttaaaatgc ggtaacataa cacaacagca gaaatttgaa cttgtgaaat      2940
     tgttggagaa atatcgcaaa tgtttctcat ctaatttgca tgaactgggc tatacaacta      3000
     gtgtagagat ggaaattaag ttaaaagatt ctgagcccgt ggtctaccgg ccctatcgcc      3060
     tgtcatattc tgatagacaa ctagtacaat ctatgattca agaaatgtta gagagtggca      3120
     tcatccggga atcttcttcg ccgtatgcaa gccctatagt cctcgtgcaa aagaaatctg      3180
     gcgaaaaacg cctatgtgtt gattataggg ctttaaacag aaagaccgtt aaggaacatt      3240
     ttccactccc ccgcatagaa gatcaattgg atctcttggc tggtaatacc atgtttatta      3300
     ctctcgattt agcatcaggg tattaccaaa ttcccatagc tgaagaatcc cgagaaagaa      3360
     ctgcctttat tacgcccgac ggccaatacg aatacaaccg tatgccgttc ggactggtaa      3420
     acgctccctc cgtattccaa agggcaataa ataaagtgtt agccaaggtt agaaacaaac      3480
     atgtgcttat atatatggat gatgttttga tcccaggacg ctcttttgaa gattgcctaa      3540
     aattacttga ggaggttcta ttacttctca aaagcagtgg acttactcta aaacttgaga      3600
     aatgcaaatt ctgcttcgat aagatagaat atttgggatt cgaagtcagt gcggatggga      3660
     ttaggccggg gtccttaaaa actgatgcag tttcaaaatt ttccgtaccc cagaaccaac      3720
     atgacgtgcg ccgttttatt ggtttggcta gtttcttcag gagatttgtc aagggattcg      3780
     caacaatagc gagaccattg accgaacttc tgaagaagga tgccaaatgg cgctggactg      3840
     aggttgaaca gaattccttt gagaccttga agcaaaattt ggtccaaagg ccaatccttg      3900
     ctttgtacga ccctcgagca gaaacccaac tgcatactga tgccagcaaa ataggcatag      3960
     ccggcattct aatgcaaaag ggagaaactg gtgtattcca tccagttgct tattacagcc      4020
     gtcagacaac cacggatgag caaaagctcc attcgtatga acttgaaaca ttggctgtaa      4080
     tagcatcgct aaataaattc cgcgtctatt tgcttgggat taaattcacc attttgactg      4140
     attgtaactc tttgcgtaca accctaacga aacgggactt aataccccga atagcgagat      4200
     ggtggattca attccaagaa tatgactgtt ccattgaata cagacctggt gaaagaatgg      4260
     cacacgctga tgcccttagt agatgtccca ttcccgacaa tgactgtgaa acgcgtgtgt      4320
     tagacgtgct aaacgtaggt tcccaagact ggatcgcaac ggtacaagac aacgatgatg      4380
     agactaaacg tattaaaaac gtgttaactg atccgcaatc ccaaaacgct gcagacatca      4440
     ttaagaatta taaaatcaaa aatgataagt tgtatcgtat cattgaacca ggcgtgctta      4500
     ggtgggtggt gccaaagggt gtgcgttggc aaattctcag ggcgaatcac gatgaagtcg      4560
     gacactttgg cttcgaaaaa acgctagaac ggattaaggc taccttttgg ttcccaaaaa      4620
     tacgtaaatt cacaaaaaaa tatgttaatg catgtcttga atgtgcccat cataaagtcc      4680
     cgtcgggaag caaagctggc ttccttcatc ccataccaaa aactgaaata ccgtttcaca      4740
     ctatccacgc ggatcatcta ggcccattca atcgtagcaa aagaggtaac tgctatatac      4800
     ttgtcattat tgactctttc acgaaataca ttaacataac accggtccgt aatacgaagt      4860
     ctacgacaag tatacgtgtg cttaaagaac acataagcta cttcggtaca ccaacgcgac      4920
     ttataactga ccagggtacg agttttacgg gaaagaaatt tcaggacttt gttaaatcgc      4980
     ttggtataaa acatatattt aatgccgtag ctacaccccg agctaacggc caggtggagc      5040
     ggtataaccg taccatcctt gccgcattgg gctccatgtc ccacgaaaaa cctaagggaa      5100
     actgggacga atacttacca gacattcaat taggaataaa taccaccata cactccacga      5160
     caaagaaaac tcctacagaa cttctctttg gctatagagc tacccacccc tctgtaggaa      5220
     acctaaacga gatcatagaa gatgtagggg ccgacgttag taatttagaa agtttacgtg      5280
     aaactgcaaa gaccttgata gaggtacaac aagacaaaga taaggcacgt tatgatttac      5340
     ataggaaaaa gggaaataat tttgtagttg gtgacctagt tagggttctt aggaatgttc      5400
     ctagtcaaga tggccaatcc agaaaactag aagctaaatg tcgcgggccc tatagaatta      5460
     agaaaatcct cccaaacgat aggtttgtca ttgaagacac cccgttaaca aagaaaggga      5520
     aaacttatga agctattgta gcactagaca agctgtttcc atggttaagt ttcggtagtg      5580
     cttatgatga catgtcctca accgatgagg atgacgaagt ccaatgtaac gaataatgta      5640
     agtctcacaa gtctagcctt ttgtcaagtt aaatgaaaag gttcctattg ataattaaaa      5700
     tactatcaaa ccaaggcatc atttattaca ctctaaggca gggattggca atgtcatgga      5760
     cagtccctgg gcaaagtcat ggccggcctc gcgcccttgg agattattaa gatcttggtc      5820
     accgtgtggt catgcaggga gcgatagcgt catggtcacc tcctgtatgt tctcacgaga      5880
     agatcatgta aagtcatgtt caattattaa aaggcaaatt ataagtacta tgtggtatta      5940
     acacgcgacc atgtcaaagg tggcagtgtc atggcccctg ttggtcaaaa gcttttagat      6000
     caggaacata atgtgaatgc ttgattgtta aattcccaga gaattataat attataagta      6060
     aaagtagatt atacaacacg gtgttataga tgattatatt tatttctaat ataaaaatgt      6120
     aaaaattaat taattatgat agtatctctt ttcaagaggc tgaagtactt tattaattca      6180
     caattgtaaa ctttaataat gtttatatca catttcacat caagttggaa ctatatattc      6240
     atgtttgatc agatttcgtg aataatgtac taagtaacta tttcataaca tatttgatta      6300
     tgtatccacg agctacttta taatatttgc ttgtcgatat agactatgta aaccttattc      6360
     ttatctttga tgtaaacttg gctatcggac atatctagtt atgtcaaata ttactatttt      6420
     ataattactt acttttcatt gcatatcttt acataacgag aggtctcgtt aatgttagtc      6480
     ggatggccga gt                                                          6492
//
ID   Gypsy-3_HeAr-LTR repbase;    DNA;    INV; 325 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-325
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5541-5541 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 325 BP; 105 A; 55 C; 49 G; 116 T; 0 other;
     tgttaggcta aatttataaa tattatttta aatttacaaa tagttcttgt aaaatgattt        60
     attaataacg tcacaatatg cttttatatt tttgtaactg gcaacacttt tgtggtagtt       120
     actcgtttcc cgctttaaat cttttttgta cagaatacca actgtcatcg acaaggttat       180
     ttaaggcggg aaatgctgag aaaaagctca gtcgtcactt gtcagttgtc tcgataactt       240
     agtaccctct gctacacaaa cgctgtactg taataaatag tttacatata cgacaaagga       300
     gtttacttta tcaagaacct caaca                                             325
//
ID   Gypsy-3_HMM-I repbase;    DNA;    INV; 4886 BP.
XX
AC   CAEZ01011107;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_HMM_;
KW   Gypsy-3_HMM-LTR; Gypsy-3_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4886
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01011107; Positions   51222   56107.
XX
CC   Positions [3917-4378] - Integrase core
CC   'GTATC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2741..4402
FT                 /product="Gypsy-3_HMM-I_2p"
FT                 /translation="MFGIFCAPEIFQKTLEKILLKCDGAINFIDDILIYGR
FT                 TEQEHDLRLQRVLQVLKENNVLLNNDKCLYKVKQVSFLGHELTSEGVRPLN
FT                 KYIESVAHFRVPKTVEELQSFLGLVNYINKWIPNMATTTEPLKQLLRQKFG
FT                 KNANIKDFWTTEQDHAFTSLKDTLSEIKTLGYYDVNDKTQVIADASPVGLG
FT                 AVLVQIDDKGPRIIAYGNRTLTDLGFRVLRLQAYRYNIKYKPGKSNIADPL
FT                 SRLCKYASYPKTKGDEHVHQIVENARPRAISMNEIKIHSEGDMEILKVKRG
FT                 IYNNKWDDSIKGYKIFENELCFFNNILLRGNRLVIPSRLRKNVLDAAHEGH
FT                 PGIVAMKGRLRCKVWWPRIDKDTETLVKSCKGCTLVGLPNPPAPMKRRELP
FT                 EAPWLDIAMDLLGPLPSRDYLLVVVDYYSRYKELKITKTITSAVIIRLLKE
FT                 IFSRLGYPSSITADNGRQFVSDEFKTFCKDCNILLFNTIPYWPQQNGEVER
FT                 QNRDILKRLKIGKFENKDIQECLNEYLMMYNSTPHSVTGKTPTELFFKRLN
FT                 RDKIPTF"
XX
SQ   Sequence 4886 BP; 1848 A; 722 C; 953 G; 1363 T; 0 other;
     agtggcgacg agaacaaggg ttagtcaaaa gatattataa tactaaaaaa aaaaattttt        60
     taataaagac aaagtaatat atgtttggtc agtgaaaagc gaaattagca agattgttgt       120
     tgtttacggt taagtttcaa tgtaatacac ttaagtaaat cttttacctc tgcataccat       180
     ggtgatatta taattatctt tggttgcagc atttataagg ttttgataaa taattattag       240
     aagtggggta gattcttgtt gaaatcatat tttaaagtgg gtgtaaatgt gaaatgatat       300
     tatactagga tgaattcaac tcgagtcaca tatattattc aattattgat caataaatga       360
     aatgaatgaa atataaaaat aaatgtatta tataatgaaa tagtgtgatt gctatatatt       420
     tatatatttc tcatgcataa tatgtcacgg tgatattttc ttgtagcaat agattagtag       480
     taataagtaa tagtattaaa taatttacag taattttatt aaaaaaataa taattgtaat       540
     aatcaggaaa caaaagcaat taaacattag ggtattataa caattaaaat gtatttatta       600
     tatgtcatta ttgtaattct atttatctaa aattttaatt taaattaagt ataaaaaata       660
     gcgttttaag aagatatttt gattgattgt attcaattgg ttattggaga attaccccaa       720
     ttgagtggta aatacttggt acaaatgtac cctcattaaa ttggaaatat ttggtacaaa       780
     tgtacctcca ttagattgga aatacttggt acaaatgtac ctccattaaa ttggaaatac       840
     ttggtacaaa tatacctcca ttaaattgga aatacttggt acaaatgtac ctccattaaa       900
     ttggaaatac ttggtacaaa tgtatctcca ttaaattgga catatttggt acaaatgtac       960
     cctcattaaa tgtaaaatat ttagtataaa tgttcgttca ttcgattagg tgctttcaat      1020
     tttaggtcac cccacactgt catcatcatc atgtctggca acttaccgtt attagaaaaa      1080
     cttgatttag agggtgataa tgcatcatta ggacagcgat gggaaaagtg gaaacggtcc      1140
     ttaagcatat acttagaggc aacagatatt acgacaccag taaagaaaag ggcgacattg      1200
     ctattacttg gtgggccaaa cctacaagaa atattctata acttaccagg ggctaatacg      1260
     gaacctacta ataacaacaa tgtttttgaa atagcgatac agaagctaaa tgattatttt      1320
     actcctaaac agagcaaggt ttacgaaagg catgtcttcc gcctaattag gcaaatggag      1380
     ggagagaaat ttgaaaaatt tattgtgagg ttaaggaatc aggcggagaa atgttaattt      1440
     gataaaccag aagagcattt gatagaccaa gtaacagaga aatgtctatc aacagactta      1500
     aggaaaaaaa tattgacaat aggtgacagt ataacgttag acaagataat aactgaagct      1560
     aatacgctag aaactgttaa tagacagtta gaagaatatg gaccgcaaaa caagaaccac      1620
     gacgttaacg ctattatccc tgccaaaggg aatagagata cttcgagatc cgacatcaca      1680
     aaattcagaa atttttcaga caaaacgtgc ggaaggtgtg gtagttttaa gcacacatca      1740
     gaaggaaaga actgcccagc cataggaaaa acttgtcatt tatgcggcaa gttaggacat      1800
     tttcgacaat actgcaagac acaactacaa agaaagcgga aaatagttga gcgcgataca      1860
     caaaaagaag ggagactatc gaaacaatgg aagaaacgga aagaaattga taatgttata      1920
     gaagaagaag aagttgatta cgtttttaat attaacaacg atgcgaatat attatgtgac      1980
     attggaggtg taaaaataaa gatgttaatc gattctggct caaaatacaa tttaattaca      2040
     gatcagacat ggaccaagtt aaaagaagaa ggagtgacat acttgagtca aaacaataat      2100
     cctgggaaaa cccttttggc atatggcagt aaaactcccc tagacatttt agggtcattt      2160
     gagacaacta ttgaggttaa taaccgtgaa gagaacgctc atttatacgt tatcacaaat      2220
     ggatccagaa acttactggg taaagatagt gccgtaaaac ttggtgtcct gaagctaggg      2280
     gttgatgtaa atcaggtgaa gaatgagccg tttccgaaat ttaaagatgt tttggtacat      2340
     ataccaatcg acgacttgca aaaacctgtt tctcaaccgt atcgacgaat acctatacca      2400
     attgaaggga agattgaacg gaaaatcaaa gaattattag aaaatgacat tatagaagaa      2460
     gttcatgaac catcaaaatg gatttctcct atagtgccaa tactgaaaga taatggagaa      2520
     ttacgtctat gtgtagacat gagacgtgcc aacacagcca ttatgcggga gaaccatccc      2580
     ttaccttcga tggaacacct tttgccaaag attaggaaag ccaagttctt tactaagctg      2640
     gatattaaga acgctttcca ccaattggaa ctccatccag actcaaggca cacacatagg      2700
     ttttattagt tctaagggtc tttaccggta taagcgcctt atgtttggta ttttctgtgc      2760
     tcctgaaata tttcaaaaga ctctggaaaa aatccttcta aaatgtgatg gtgctataaa      2820
     tttcatcgac gatattttga tttatggacg gacagaacaa gaacatgatt tgcgtcttca      2880
     aagagtattg caagtattaa aggaaaataa tgttctgctt aacaatgaca aatgtttata      2940
     caaggttaaa caagtcagtt ttctgggaca tgaattgact tcagagggtg tcaggccctt      3000
     aaacaaatat atagagagtg tagcccattt tagggttccg aaaaccgtag aggaattaca      3060
     aagctttttg ggtcttgtaa attacattaa caaatggatt cctaatatgg ctacaacgac      3120
     tgaaccatta aagcagctat tgagacaaaa atttggcaag aatgcaaata taaaagattt      3180
     ttggactacg gaacaagacc atgctttcac ctcattaaaa gacacattat cggaaattaa      3240
     gacacttggt tattatgatg tcaatgataa aactcaagtc atagctgatg ctagcccagt      3300
     aggattaggt gcagtcttgg tacaaattga tgataaaggt cctagaatta ttgcatacgg      3360
     aaaccgcacg ctgacagact tagggttcag ggttttaagg cttcaggctt accgatataa      3420
     tattaaatat aagcctggta agtcgaatat agcagacccg ctgtcgcggt tgtgtaaata      3480
     tgcaagttac ccaaagacca aaggtgatga acatgttcat caaatcgtag agaatgcaag      3540
     acctcgtgca atttctatga acgagattaa gatacactca gaaggagaca tggaaatact      3600
     caaagtgaaa agaggcattt acaataataa atgggacgat agtataaaag gatataaaat      3660
     atttgaaaat gaactgtgtt tctttaataa tatactttta agaggtaata ggctggtcat      3720
     accatctcgg cttcggaaaa acgttttaga tgcagcacac gaggggcacc cagggatcgt      3780
     ggcaatgaag ggtcgtttga gatgcaaagt atggtggcca aggatagata aggatacaga      3840
     gaccttagtg aagagttgta agggttgtac actggttggg ttgccgaatc cacctgctcc      3900
     tatgaagcgt cgtgaactgc cggaagcacc gtggttagat attgccatgg atttgctcgg      3960
     tccgttacca agccgtgact atcttttagt ggtagtggat tattatagcc gctataagga      4020
     actgaaaatc actaaaacca taaccagcgc tgttataatc agattattaa aagaaatatt      4080
     tagccgatta ggctatcctt catcaatcac agcggacaac ggacgacagt ttgttagtga      4140
     cgagttcaaa actttctgta aagattgtaa catactgcta tttaatacta tcccctactg      4200
     gcctcagcaa aatggcgaag ttgaaagaca aaacagagac atattaaagc gtttaaagat      4260
     tggcaaattc gaaaataaag acatacaaga atgcctaaac gaatacctca tgatgtataa      4320
     ttcgacacct cattcagtga ccggaaaaac accgacagag ttattcttca aaagactaaa      4380
     cagagataag attccaacat tttaagacat aagttatgaa attgatgaca cagagataag      4440
     agacaaggac aaacaacaaa aagaaaaagg aaaagattat agtgataaaa gaaggaatgc      4500
     ccgggattca gatttaaatg aaggagacaa agtgtatata aaagaaatta ataaaacaaa      4560
     taagctaact ttaaattata atccaacacc acacattgtg gagagtacaa aaaatggaga      4620
     cacaacaatt aggaacgaag aaactggaca aactctaaga aggaacatat tatatataaa      4680
     aagaatagaa gggcaatgga aaactatagg tgagaaccaa gaagacggaa ttgtcgactc      4740
     tggcgaaagt ggaagacaat aaattaatga aattggaaac gatttaatta attatatatg      4800
     gttgatttag tgttactaat taaattgtaa tatgactaaa ttatgtacac ttgctaagtt      4860
     atattaaagt tttgataagg aaggga                                           4886
//
ID   Gypsy-3_HMM-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   CAEZ01011107;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_HMM_;
KW   Gypsy-3_HMM-I; Gypsy-3_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-170
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01011107; Positions   51052   51221.
XX
SQ   Sequence 170 BP; 37 A; 48 C; 51 G; 34 T; 0 other;
     tgtagtgttt gtacaccatg tcactgtcac atgacactgt cacaatgaca ctgtctcgag        60
     ctaaggggtg cggggtgcgc gtcattaccg cgcgagccac gggcgagagc ggacgcggcg       120
     cttgcgcaca tccttagttg gcgagccagt gcatcataga cgacaccaca                  170
//
ID   Gypsy-3_LH-I repbase;    DNA;    INV; 5023 BP.
XX
AC   ADOQ01000944;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_LH_;
KW   Gypsy-3_LH-LTR; Gypsy-3_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5023
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000944; Positions   11823   16845.
XX
CC   Positions [3501-3980] - Integrase core
CC   'ATATAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1050..4337
FT                 /product="Gypsy-3_LH-I_1p"
FT                 /translation="MWCYRSFSCGLSCGKTKGRGKLGFVELVGANSKGKCR
FT                 ASEENVNTIISRKQMFCLNGFVNGCRCNFKIDTGSDVTLIRSDFLSFSKKI
FT                 SFKESFVFKYPTGERVPIKGRVEILVKIGKFKVKLFTYVVDMIEECLLGVD
FT                 FLSEVEFDTFFNSFFEGSSCKGEIPICSRVMEIPSTLKELFEQETSGLKDE
FT                 QKKRFTQFLIEFQDVFSEEVIAGNCKEVEHKITLMDSNPIKQAPRRVPFHF
FT                 REEVDKIIEDMKQQGVIEESYSPWVSPAVMVKKKDGSIRFCVDYRKLNSVT
FT                 IKDSFPLPRIDDIFDKLSGNSWFSTLDLKNGYWQIKIRPEDKEKTAFSIGK
FT                 GLWQFTVMPFGLCNAPATFERLMEKVLLSLLKDCLVYLDDVIIFATNFDEL
FT                 LERLRKVFLKLRSSNLKLNPKKCSFLKREIKYLGHVVSERGIATNEEKISA
FT                 VKNWPTPVTKKQIRSFLGFCSYYRRFVKGFSLIAKPSFSLTENSSKFIWTE
FT                 QCNTAFEELKLRLTSSPILSFPTEIGQFILDTDASNHGMGAVLSQVQDGKE
FT                 KVIAYLNKVFDKSERNYCVTRRELLAIIVSLKSFHHYLYGRKFLIRTDHIS
FT                 LRWLMSFKNLEGQLARWLEQIQQYDFEIMHRKGILHGNANGLSRRPCEKVN
FT                 CQYCFKAETKEEKEIGRIVFDSFQINWREEQLKDLMLNKFLRGKEVNCRPN
FT                 LQEVVSEDSSARIYWTLWDSLLIKEGVLYKNWEATNFKKSVLQIIVPKQRI
FT                 KQILEIAHDSSSGGHFGINKTLDKFEGDFIGRYVSKMLKIGVGLVMWICIA
FT                 KKGPSGKGKSEMQIYDTGSPFERLQMDILGPFPTSTSGNKYLLVIMDCFTR
FT                 WVEAFPLKNFRAKSVAEVFVNQFISRYGVPSELHTDQGKNFDSKLFVELSI
FT                 LLGIKKTRTTPLHPQSNGIVERQHQTIINYLAKFILENQLDWDRWIGMCLL
FT                 ALRSARHKAIRITPAEMCFGRDLTLPLDLLRGNPPQEFVFTRGNYVFQLKE
FT                 KLNSIHEEVRQHLNMRSLKIKTLYDQNARRILFNPGQKVWLYNPRKFIGRS
FT                 PKLQSNWEGPFEVVKRLNDVVYCIRQSQKHKNKIISFNN"
XX
SQ   Sequence 5023 BP; 1652 A; 760 C; 1100 G; 1511 T; 0 other;
     ttttgggggc tcgtccggga tcgaaagtgc tcagtgcata aaattgagaa atggccacaa        60
     gaacggaaca acgagcagga gccggcgtag caacgcgaaa aaggcttcga ctacagagtg       120
     ttcctgcgtc cgattcgata gaagaatctt caacaacaga agcttcgacg cttcaagcag       180
     tgatgaggga aattcggcaa ctgcagtcag aacgccggca gcagcaggaa gaattcgctg       240
     aggagatacg gatgtgggac gatatgctcc gagagatgga ggaacggatg cagaactacg       300
     aaattcagct aagtcgtaga aataatagag tagatgagcg aattgcacaa agagatagcg       360
     cggaattaga ttcacgagaa acgatcgcga aagaattagg gtttaaatta aaacccgata       420
     attttgacgg gacagttccg cttcgggaat tcttcacaca atttgacttg attgcgcgag       480
     cgaactaatg gtcagactcg gcaaaaacgg tcgcgctcgt ctcatgtctg cgtggcaaag       540
     ctcgtacggt attagaatgt ataagggatc ttgaaaatct agagttttcg gaactcaaaa       600
     caaaattgaa attgcgtttt ggagaaagtc atcttgctca aacgtattat tcacaattta       660
     cgaatcgccg acagaaattc ggtgaagatg aggtgacact tggctctgat atcgagcgat       720
     tgtctcaatt ggcgtatcct gagtgtacac atcaggttcg ggaaaagatc gcatgtgcgc       780
     agtttatttc tgcactacat aacggatttg tgaagagaac gttacaatta gagggagttt       840
     catcccttaa gattgcaatt caaagagcaa tggctgtgag agtgatccag aagagaaatc       900
     atgaaaaaca acattaattt taaaaacaaa aattatgata atgaaggaaa gaaaatggaa       960
     aatgaaaatt ataaaaagaa aaatgttgat ctgaataaaa ataaagtttt cttagatcag      1020
     aaagcacgct ctacgaaaga gtgttggcaa tgtggtgcta ccggtcattt tcgtgcggac      1080
     tgtcctgcgg taaaacaaaa ggccggggaa aactaggttt tgttgaatta gtcggggcga      1140
     attcgaaagg aaagtgtaga gcctcggagg agaatgtaaa tactataatt tctagaaaac      1200
     aaatgttttg tttgaacggt tttgtaaacg gctgtagatg taattttaaa attgatacag      1260
     gctcagatgt gactctaatt cggagcgatt ttcttagttt ttcgaaaaag atttctttta      1320
     aggaatcatt tgtttttaag tatccaacgg gagaaagagt tcctattaag ggaagggtag      1380
     agattttggt gaaaatagga aaatttaaag taaaattatt tacgtatgtg gttgatatga      1440
     ttgaggaatg tttattaggg gttgattttc tttcagaagt ggagtttgat actttcttta      1500
     attcattttt cgaaggttct tcttgtaaag gagaaattcc gatttgttct cgtgtaatgg      1560
     aaattccttc tactttgaag gaactattcg aacaagaaac aagtggtttg aaggacgaac      1620
     agaagaaacg ttttactcaa tttttgattg aatttcagga tgtattttcg gaggaggtta      1680
     ttgcgggaaa ttgtaaggaa gttgaacaca aaattacgct aatggattct aacccaatta      1740
     agcaagcccc tcgtcgtgtc cctttccatt ttcgggaaga agtcgataag ataatagagg      1800
     atatgaagca gcagggagtt atcgaggaat cttatagtcc atgggtatcc cctgcggtta      1860
     tggtgaagaa aaaagatggt tccattcgat tttgtgttga ttataggaaa ttaaattcag      1920
     taacaattaa agattctttt cctttacctc gtatagacga tatatttgat aaactgtctg      1980
     gcaatagttg gttctctact cttgacctca aaaacggtta ctggcagatt aaaattcgtc      2040
     cggaggataa agaaaagaca gcgttttcga taggcaaagg tttatggcaa ttcactgtca      2100
     tgcctttcgg tctttgtaat gctcctgcta ctttcgagcg attaatggag aaagtacttc      2160
     tttcattatt gaaagactgc ttggtgtatt tagatgatgt cattatcttt gctacgaatt      2220
     ttgacgagtt actcgaacgt ttaagaaaag tttttctaaa acttcgttct tcaaatttaa      2280
     agttaaatcc aaaaaaatgt tcatttttaa agagggaaat taaatattta ggtcatgtgg      2340
     tttctgaaag gggtattgcc actaatgaag aaaaaatttc tgctgttaaa aattggccta      2400
     ctcctgtaac taaaaagcaa attagaagtt ttctaggatt ctgttcttat tatagaagat      2460
     ttgttaaggg attttcttta atagccaaac cgtcattttc tttaacggaa aattcttcga      2520
     aattcatttg gacggagcaa tgtaatactg cttttgaaga attaaaactt cgtttgacgt      2580
     cttctcctat actttctttc cctacggaaa ttgggcaatt tattttggat acggatgctt      2640
     caaatcatgg aatgggagca gtactttctc aagtacaaga tggtaaagaa aaggttatag      2700
     cttatttaaa caaggttttt gataaatccg aaaggaatta ttgtgtcacg cgtagagagt      2760
     tgttagctat tattgtttcg ttaaaatctt tccatcatta tctttacgga agaaagttct      2820
     tgattagaac tgaccatatc tctttacgtt ggttaatgtc atttaaaaat ctagaaggac      2880
     aactggcacg ctggctagag caaattcaac aatatgattt tgaaatcatg catcgcaagg      2940
     gaatcttgca tggaaatgct aatggtctat ccagacgtcc atgtgaaaag gttaattgtc      3000
     aatattgctt taaagctgag acgaaagaag aaaaggaaat tggccgtatt gtttttgatt      3060
     cctttcagat taattggagg gaggaacaat taaaagattt aatgcttaat aaatttctac      3120
     gagggaaaga agtaaattgt cgtcctaatt tacaagaggt tgtttctgag gattcttcag      3180
     ctagaattta ttggactcta tgggattccc ttctgattaa agaaggtgtt ctctataaaa      3240
     attgggaagc aactaatttc aaaaaatccg ttctccaaat tattgttcca aagcaaagaa      3300
     tcaaacaaat cttggaaata gcacacgatt cttcatcagg aggtcatttt ggaataaata      3360
     aaacattgga taaatttgaa ggcgatttta ttgggcgtta tgtaagcaag atgctgaaaa      3420
     ttggtgtagg acttgtgatg tggatttgta tagcaaaaaa aggaccttct gggaaaggga      3480
     aatctgaaat gcaaatttat gacaccggtt ctccttttga gagacttcaa atggacattc      3540
     ttggtccatt tcccacttcc acttctggga ataaatattt gttagttata atggattgtt      3600
     tcactaggtg ggtagaagct tttcctctta aaaattttag agctaaatcg gtagcggaag      3660
     tttttgttaa tcaatttatt tctcgatatg gagtaccttc ggagcttcat actgatcaag      3720
     gaaagaactt tgattcaaag cttttcgtag agttatctat tttattagga attaagaaga      3780
     ctaggacaac tccattgcat ccgcaatcaa atggaatagt cgaacgtcaa catcagacaa      3840
     taataaatta cttagcgaag ttcatattag aaaatcagtt agattgggac cgctggatag      3900
     gaatgtgctt gctagctttg aggtcggcta ggcataaagc cattagaatt actcctgctg      3960
     aaatgtgttt tggaagggac ttaacacttc cattagatct tctccgcgga aaccctccac      4020
     aagaatttgt gttcaccaga gggaattatg tttttcaatt aaaagaaaaa ttaaactcca      4080
     ttcatgaaga agttagacaa catctaaata tgagatcttt aaaaataaaa actctttatg      4140
     atcaaaatgc tcgccgtatt ttattcaatc cgggacaaaa agtctggttg tataatcctc      4200
     gaaaatttat aggaaggtcc ccaaaattac agagtaattg ggaaggacct tttgaggttg      4260
     tcaaaaggtt aaatgacgta gtttattgta ttaggcagtc ccaaaaacat aagaataaaa      4320
     taatttcatt caataattaa ttaataattt cattcaataa taaatcattt ggataggtta      4380
     gctccttata atgagagaca aatatagagt caataggaat ctgtcttatt attattatta      4440
     ttattaaaat atttagttta ctcttattat ttttctatgt attatagtac aaacaagaag      4500
     aaaattcgtg gagcaaggaa taaaaagaaa aggaaggaag gaagtcttca gaaaacaggg      4560
     cgacaggaat ctgtttatga agtctgcttc gcccacggtt tttgaaccgt ggtttttccg      4620
     tgggccgtag ggcaaatgcc gaggcaggga ctcgagaagt ccattttgga tattgggtcc      4680
     acggtagaca tccctctctt gtccgaagaa ttgttttgca aaaatgaaga aacgatttaa      4740
     gtcatttgga tccaagaagg tggagttcgg taacctgctg cagtagcaca ggaagaacag      4800
     gcaattcacc aaggatcctg gagatggcta gcaattagtt caagttgatt gtcgggatga      4860
     caattttgaa gaaacgactc aagtcatttg gatccaagaa ggcgaagttc gataagctgc      4920
     tgcagtagca caggtagaac aggtaattcg cctaagatcc tggagatgac aagcaatcag      4980
     ttcaagttga ttgtcggacg acaatcttga agaaaggggg cag                        5023
//
ID   Gypsy-3_LH-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   ADOQ01000944;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_LH_;
KW   Gypsy-3_LH-I; Gypsy-3_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-275
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01000944; Positions   11548   11822.
XX
SQ   Sequence 275 BP; 61 A; 48 C; 59 G; 107 T; 0 other;
     tgttatgtcc ctgatatctc atcgtatcga tatatcgata tgtcaatgag tttccttgga        60
     gacaggttgt tgacatctca cgcctttcag attttggctg gctgtctcgt tgtacggttg       120
     tacttagcag catggtcttc ttttaaaaac gctcttgtta attaacgtgt gtttattgtg       180
     ttactgttgt tctgagttaa taaactgtta atagttcttt ctaaaagtgt tggtttattt       240
     gtgtaaaccg cgcgacgcgt ttcggaaacg caaca                                  275
//
ID   Gypsy-3_LMi-I repbase;    DNA;    INV; 4586 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 20.01, Created)
DT   26-FEB-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_LMi-I;
KW   Gypsy-3_LMi-LTR; Gypsy-3_LMi_.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4586
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-FEB-2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3358-3834] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..1913
FT                 /product="Gypsy-3_LMi-I_2p"
FT                 /translation="MEQPQATVVDIPIPPWGQVLHNDLQSLADSLRQLVAA
FT                 TTAQASRMDSLSSVVTTLVSPPASSSAPARVSTAPFPPPFSGFDDSLEDWD
FT                 SYEKRLRQHFLAFGVSDPDLCKALFLSWISPRIYQLLCQLAPLQEPATLSF
FT                 DEMCRLLSSYYRPRTHVIAARVEFYKARKKPNQSYRAWAAELQGLSRRCLF
FT                 VTATHQESYADDMVRDAILRLAPDREVRQRALQLDNPTLADVLHIAQSFEI
FT                 SRAAGDQIEAWGDVAAISSDGVHSSDSDVDVAAVHDRSNHRAARRQQTSKQ
FT                 RQRPAPRGRPNTQQPLPSCQFCFVDHDRASCPKRWVTCNKCQKKGHMASVC
FT                 RSQPVSAEVDMEINLVQELQLSPAKLFVEVHVFDKSVTLQVDTGASVSLLN
FT                 YHTYVRLGSPQLAPVERSLRNYSHQRIPVLGQFTASTAYKSVERPITFLVV
FT                 DDTAAVNIFGLDAFTAFGFSISDSVNLVSDTVPFHDLESLCQEFSSLFSGE
FT                 LGCASDFSAHITMKPTARPKFFRARQVPVALRDQLKAEIDRLQAMQVLRPV
FT                 TSSEWATPLVIVRKPSGALRICGDFKVTINAQSVIDSYPLPRTDELLALLS
FT                 GSHFFFSSRLGRGLSPTSPR"
FT   CDS           3268..4572
FT                 /product="Gypsy-3_LMi-I_1p"
FT                 /translation="MDSDIVRLVASCSQCASQQAAPRASLSPWPQPRQPWE
FT                 RIHVDYAGPFLNSYWFFVVDAYSNFPYVMRCPTMSTTMTIQSLSKVFAIEG
FT                 LPHTLVSDNGPQFTSSAFRDFCAQLGVRHVPTPPFHPQSNGEAERLVRTFK
FT                 VQMRKYVASSSVDDAVLRFLSSYRFTPMGEHSPAELLHGRQPRTMLHLLLP
FT                 RPRPVAPLPRRYAPGSAVWARGFGRSPRWLPGVVTGCRGRRICSVRTPGGV
FT                 VRRHWDQLRPRAPAGSTPQAPPPPPPPTLPVGSTPDLQVPHQTPPPESMVP
FT                 YPALPAVVTSSVRPMPITDAAPLPAVAPADDKASSTSPPAGGAAAVQVHVP
FT                 QSGQAGPLPDNVTEPSPPTSPVLGSSAAPGSPIIAGCLPRRTNNPRRPRPH
FT                 QYRPYAQVPARSLLNDPAPPSDDATPMDIAWVRAGSVDISP"
XX
SQ   Sequence 4586 BP; 846 A; 1367 C; 1178 G; 1195 T; 0 other;
     acattggcga cgagagtagg gttcgaacgc gtgtgcttgg ttcaccctgc ttatcggcta        60
     tggaacagcc gcaggccacc gttgttgaca ttcccattcc cccttggggt caagtgcttc       120
     ataatgactt acaatcttta gctgactctc ttcggcagtt agttgccgcg acgacggcac       180
     aggcgagccg tatggacagc ctgtcgtccg tggttacaac cctggtttcg ccccctgcgt       240
     cgtcgtcggc tccggcacgg gtaagtacgg ctccttttcc gccgccgttt tctggatttg       300
     acgatagtct tgaggactgg gactcttacg agaaaagatt acgacagcat ttccttgcct       360
     ttggtgtatc tgacccagat ttgtgtaaag ctttattttt gtcttggatt tccccgcgca       420
     tctaccagtt gttatgccag ttagctcccc tgcaggaacc cgcgacgttg tcttttgacg       480
     aaatgtgccg cctgttgtct tcctattatc ggccgcgcac tcatgttatt gcggccaggg       540
     tcgagttcta caaggcgcgc aagaagccaa accaatctta ccgtgcttgg gcggctgaac       600
     ttcagggtct tagccgtcgt tgtttatttg tcacagctac ccaccaggag tcatatgctg       660
     acgatatggt ccgcgatgct attcttcgcc tcgcgccgga ccgggaagtg cgccaaagag       720
     ccttacaatt agacaatcct acactagctg atgtgcttca cattgctcaa tcttttgaga       780
     tttctcgggc tgcgggggat caaattgagg cgtgggggga cgtcgcggct atttcttccg       840
     acggcgttca ctcttccgat tctgacgtag atgttgccgc ggtgcacgac cgctctaatc       900
     accgtgcggc gcggcggcaa caaactagta aacagcgcca acggcctgcg ccgcgggggc       960
     gtcccaatac tcagcaacct cttccgtcct gccaattttg ttttgttgat cacgacaggg      1020
     cttcttgccc taaacggtgg gtgacttgta ataagtgtca aaagaagggc cacatggctt      1080
     cagtatgccg ttctcaaccc gtttcagcgg aggtagatat ggaaatcaat ttggttcagg      1140
     aactgcaact gtctcctgca aaactatttg tggaagtgca cgtttttgac aaaagcgtga      1200
     ctttacaagt ggatacaggg gcctccgtct ccttgttgaa ctatcacacc tatgtacggc      1260
     taggttcccc ccagttagct ccggtggaac gatccttgcg caattacagc catcaacgca      1320
     ttcccgtgtt gggtcaattt acggcttcca ctgcatataa atcggtggag cgtccgatta      1380
     ccttccttgt ggttgacgat acggccgcag tgaacatatt tggccttgat gccttcaccg      1440
     ccttcggatt ttcaatttct gactcagtta acttagtttc ggacactgtg ccttttcatg      1500
     atctcgagtc gctctgtcaa gaattttctt ctttattttc tggtgagttg ggctgtgctt      1560
     ctgacttctc ggcgcacatt actatgaagc cgacagcgcg gccaaaattt tttcgcgctc      1620
     ggcaggtacc ggtcgcctta cgcgatcagc tgaaggctga aatcgatcgc ctccaagcca      1680
     tgcaggttct tcgcccggta acttccagtg aatgggccac accacttgtt attgtaagga      1740
     aaccctcggg cgccttacgt atctgcggcg actttaaagt cacgattaac gcgcagtcgg      1800
     tcatagactc ctatccactg ccgcgtactg atgaattatt agctttactt tcggggtcac      1860
     attttttttt ctcaagtaga cttggcagag gcttatctcc aacttcccct cgatgaggaa      1920
     tccaggcagt tgctggtggt taacacaccc ttcggcctct atcaatacca acgtttgccg      1980
     tttggcgtgg ccagtgcgcc ggcaattttc caacgcttcc tggaacaact gttgcgcccc      2040
     gttccggggt gcgttaacta cctagatgat attgtggtta caggatcatc gcccgcggag      2100
     caccttcata acttgcgggc cctctttcaa gttctgcagt ctgctggcct ccgttgcaac      2160
     ctttctaagt ctcggttttt ccaatcatcg attccctacc ttgggtttga aatttcatca      2220
     gaaggagtac gccccctgcc ggaccgtgtg gcagcagttg cctctcttcc gcggcccacg      2280
     tccgtcaagg acttgcaggt ttttctgggc aaagttgcgt actaccatcg ttttctgccc      2340
     ggtgcggcta ctgtagcgca acctctccac cacctcctcc acaaagatgt gccttttgtc      2400
     tggtcggcgg actgtgaccg agctttcacc acactgaaaa atcttctagt gtcggccccc      2460
     tgcctggccg cgtacactcc gggtcagcac ctggttctcg ctactgatgc ttcccagtac      2520
     ggggttggag cggtgctggc ccataaattt cctgacgggt ctgaacgccc tatcgcgtat      2580
     gcctctaaaa ctttgacccc ggcccagcaa agatattctc agattgaaaa agaggctttg      2640
     gccattgtct atgccttaaa gaaatttcac gtgtatttgt atggtgtcaa gtttcacctg      2700
     attacggatc acaaaccgtt ggtctcgctt ttccatccta ccgcctctct tcccgataag      2760
     gccgcacacc ggcttcagcg gtgggctctc tttctgtcac ggtacaatta tgaaattcac      2820
     ttccggccta cagcccaaca cgctaatgct gacgccctgt cgcgtcttcc tattggacca      2880
     gatcctgaat ttgataatga agaacttctc tgcttttacc tggacgagga agtgaaggct      2940
     gctgtggata gtttccctat tacgtcttca gtactgtctg cggctgtggc tgctgatcct      3000
     gtgttacggc aggtcttgca ttatattcgt accggttggc cggaaattcc tccgcgccgg      3060
     gcatccgatc ccttgcggaa ttattattcc ttcagactcc gtttgtctga atgtgacggg      3120
     gtcatcttac tggctactga cgacctgcgg tctcgggtgg ttgtgccggc gaccttacgt      3180
     tcgcgtgtgc tggcgttgct acacgaggga cattgggggg cctcccgcac taaaactctg      3240
     gcccggcgac atgtgttttg gcccggtatg gatagtgaca ttgtccgcct ggtggcctcc      3300
     tgctcgcaat gtgcttcgca gcaggcagcg ccgcgcgcgt cactttcacc ttggcctcag      3360
     cctagacagc cttgggagcg catacatgtg gattatgccg gcccttttct taattcctat      3420
     tggttttttg tcgtggatgc ctactctaac ttcccttatg tcatgcgctg ccctaccatg      3480
     tctacgacca tgactattca atctctttct aaggtttttg ccattgaagg cctccctcac      3540
     acattggttt cggacaacgg gcctcagttt acctcctctg cttttcggga tttctgtgcc      3600
     cagttggggg tccgtcatgt tcctactccg cctttccacc cccagtctaa cggtgaggcg      3660
     gagcggctag tgcgcacgtt caaggtccag atgcgcaagt atgtggcctc ttcttcagtg      3720
     gatgatgctg tgcttagatt cttatcttct taccgcttca caccgatggg ggagcatagt      3780
     cccgctgagc tactccacgg ccgccagccg cggacgatgc tgcacctgct cctgccacgg      3840
     ccgcggccgg tcgcaccgtt gccacgccgc tacgctcctg gctcagccgt ctgggcgcga      3900
     gggtttggac gcagcccccg ctggctgcca ggcgtcgtca cgggctgcag aggccgacgc      3960
     atatgttccg tacgcacgcc aggaggcgtg gtgcgccgcc actgggacca gttacgcccc      4020
     cgggctcctg cggggtccac accacaggcg ccgccaccac caccaccgcc tacgctgcca      4080
     gtgggttcca cacctgactt gcaagtgccg catcagacgc ctccgccgga gtcgatggtt      4140
     ccatacccgg cgcttcccgc ggtcgtcaca tcctcggtga gaccaatgcc aatcacggat      4200
     gctgcgcccc tgcctgcggt ggcgcctgct gacgacaagg ccagctccac ctcgccgcct      4260
     gcgggagggg cagccgctgt acaagtgcac gtcccacagt ccggccaggc gggaccactg      4320
     ccagacaacg tgaccgagcc gtcgcccccg acatctccag tcctgggttc atcggcggca      4380
     ccgggttctc cgatcatagc gggctgcctc ccgagaagga caaacaaccc tagacggcca      4440
     cgcccccacc agtatcgtcc atatgcccag gtgccggctc gcagtctcct caatgatccc      4500
     gcaccacctt ccgatgacgc cacgccgatg gacattgcct gggtccgcgc ggggtcggtc      4560
     gacatttccc cctgaggggg gaggag                                           4586
//
ID   Gypsy-3_LMi-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 20.01, Created)
DT   26-FEB-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_LMi-I;
KW   Gypsy-3_LMi-LTR; Gypsy-3_LMi_.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-288
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-FEB-2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 288 BP; 68 A; 82 C; 71 G; 67 T; 0 other;
     tgctatacat cgcggcgcac agcatactaa ttacgcgccg ccacacgtgg ttacgccacc        60
     agctacgaga cggcgacact agcgcggacc agtgttaccg gcctgccacc tagcggccgc       120
     cggcacagcg aagccaagcg aaccgcaacc cggctcagtt gtgtgtgaga cttgttcgag       180
     agcgcatagc attgagtgtt gtatactgtc atactgacga tcagttcttt ttgttattcc       240
     actcgacact attattagtg ctcgtgacag tactacttag aagttaca                    288
//
ID   Gypsy-3_MeUr-I repbase;    DNA;    INV; 4235 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4235
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3039-3039 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..4229
FT                 /product="Gypsy-3_MeUr-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPKKDREEDESAKTPSGPKISFSDLEKSMITFTGDD
FT                 TYPISTWIQEFEDTAEIMEWSKIEKLVYGKRLLSGTAKLFLRSLGGVKEWE
FT                 SLKKSLLEEFGPKSNSAIVHKQLAARRMKNDETFQQYFLYMKEIALHASVE
FT                 DEALMEYVIDGIRDSETNKAILYGAKNIKEFRQKLDAYSNLRKRIDKKNSV
FT                 RQINPPTANPTAAPTSSGRKPINKRCYNCGETNHLAPACTKGIKCFRCNEF
FT                 GHKGNECLSQPKKTLNIQNQKVEKKAPYKMVKINGVEMTAIIDTGSDVNLI
FT                 KINKLKDFEPDEPKYENNPKICLTGIGEREINTEGHFAAKLQIDDCFIDTV
FT                 FHVVKDETIPLNLILGNPILHDLNINFTSDGITVEKISHLTLLIEEKNPLE
FT                 DLNIGDTMYSENIKNEVKQYKVGEAEKESNVEMKILLTDETPIYQNPRRLA
FT                 PLEKEIVNKQIEEWTEQKIIEPSKSDFASPVVLAKKKNGQYRLCIDYRKLN
FT                 KKIIKERFPLPLIEDQLDQLKEAKLFTSLDLKNGFLHVNVHKDSQKYTSFV
FT                 TPQGQYHFTKMPFGLCTAPSVFQRFINNIFQDFISQGIVLAYLDDLIIPSK
FT                 TEEEGLSKLKLVLKRAEEFALEFNWKKCHFMKKEIEYLGYIINNKKIQPSR
FT                 ENINAVSKFKIPNDVKSLQSFLGLTGYFRKFIKNYSLIARPLTDLLKKNAD
FT                 FYLDENCEKAFLELKNKLCSSPVLSIYNPNFETELHTDASAKGFGAVLLQK
FT                 DPEDNQMHPVHYMSKKTSPTEEKYHSYYLEILAIVEAIKKFRVYLLGIHFK
FT                 IVTDCTALTMTLQKKDLPPRVARWALLLEEYDYEIEHRPGLRMKHADALSR
FT                 QPVCLILTETTARIKKAQEEDTQIDVXKXILEKEPYKDYXIENGILTKQKE
FT                 GRKLIVVPKKMQYDVIKKNHEKGHFSISKTEELINREYFIEDLKKKIKKVI
FT                 DNCIECILISHKRGKKEGYLHPLDKGDVPLSTYHIDHLGPLTSTNKNYKYI
FT                 LTIIDGFTKFTWIYPVKTLTTDETLSKLITQQQTFGTPQRIISDRNAAFTS
FT                 NEFKNYCREENIDHYTITTGQPRGNGQVERIHQIIIEVLSKLSIAEPTKWY
FT                 RNVAAVQRALNSTFQRSIGMTPFELLLGVQMRNKDDEIFKLIEEENIARYN
FT                 ENRSELRQKAKESIQKIQEENRRSYNKNRKEANQYEIGDLVAIKRTQFTQG
FT                 SKLYPKFLGPYEIVKKKRNDRYAVKKVGDGEGPINTTSSADLMKPWIGQDF
FT                 YSSGSDEEAG"
FT   CDS           1250..4228
FT                 /product="Gypsy-3_MeUr-I_2p"
FT                 /translation="DDAIIDTGSDVNLIKINKLKDFEPDEPKYENNPKICL
FT                 TGIGEREINTEGHFAAKLQIDDCFIDTVFHVVKDETIPLNLILGNPILHDL
FT                 NINFTSDGITVEKISHLTLLIEEKNPLEDLNIGDTMYSENIKNEVKQYKVG
FT                 EAEKESNVEMKILLTDETPIYQNPRRLAPLEKEIVNKQIEEWTEQKIIEPS
FT                 KSDFASPVVLAKKKNGQYRLCIDYRKLNKKIIKERFPLPLIEDQLDQLKEA
FT                 KLFTSLDLKNGFLHVNVHKDSQKYTSFVTPQGQYHFTKMPFGLCTAPSVFQ
FT                 RFINNIFQDFISQGIVLAYLDDLIIPSKTEEEGLSKLKLVLKRAEEFALEF
FT                 NWKKCHFMKKEIEYLGYIINNKKIQPSRENINAVSKFKIPNDVKSLQSFLG
FT                 LTGYFRKFIKNYSLIARPLTDLLKKNADFYLDENCEKAFLELKNKLCSSPV
FT                 LSIYNPNFETELHTDASAKGFGAVLLQKDPEDNQMHPVHYMSKKTSPTEEK
FT                 YHSYYLEILAIVEAIKKFRVYLLGIHFKIVTDCTALTMTLQKKDLPPRVAR
FT                 WALLLEEYDYEIEHRPGLRMKHADALSRQPVCLILTETTARIKKAQEEDTQ
FT                 IDVXKXILEKEPYKDYXIENGILTKQKEGRKLIVVPKKMQYDVIKKNHEKG
FT                 HFSISKTEELINREYFIEDLKKKIKKVIDNCIECILISHKRGKKEGYLHPL
FT                 DKGDVPLSTYHIDHLGPLTSTNKNYKYILTIIDGFTKFTWIYPVKTLTTDE
FT                 TLSKLITQQQTFGTPQRIISDRNAAFTSNEFKNYCREENIDHYTITTGQPR
FT                 GNGQVERIHQIIIEVLSKLSIAEPTKWYRNVAAVQRALNSTFQRSIGMTPF
FT                 ELLLGVQMRNKDDEIFKLIEEENIARYNENRSELRQKAKESIQKIQEENRR
FT                 SYNKNRKEANQYEIGDLVAIKRTQFTQGSKLYPKFLGPYEIVKKKRNDRYA
FT                 VKKVGDGEGPINTTSSADLMKPWIGQDFYSSGSDEEAG"
XX
SQ   Sequence 4235 BP; 1611 A; 718 C; 817 G; 1081 T; 8 other;
     tctttggggg ctcgtccggg atgtgaatgt gttttgttct aaaagtgatc aacaagaaga        60
     ttacgaagtt atattgaaga atctgcaggt aaatctaccc tatacctgac gcacaaaaca       120
     atagcgagtg caccgatttg cgtaaacaac taaagcttcg ggacgcgaaa ccgacggatt       180
     ccagccaaac cgaatgcttc gggacgctga ttgtgacgtc gtcgtcgtaa tatttttata       240
     ttatgatttt aaactatgaa gaacgactat ggtgatgatt tctcaagatt ttactgcact       300
     ttgaagatta attgaagctg taataaatgg tttaagaagt aagacgtaat taagacgaaa       360
     gactaataag aagaagaagt aaaaattttg atatttatta ctagctcacc aagaaaatgc       420
     cgccaaaaaa agatagagaa gaagatgaaa gtgctaaaac tccttctgga ccaaaaatat       480
     cttttagtga tttagagaaa tctatgataa cgtttaccgg tgatgacaca tatcccattt       540
     caacctggat tcaagaattt gaggatactg cagaaattat ggaatggtct aagattgaga       600
     agcttgttta tggaaaaaga ttactgagtg gaaccgcaaa gctattcctt cgatctctag       660
     gcggtgttaa agaatgggaa tccctaaaaa agtcccttct agaagaattt ggtcccaaat       720
     cgaatagcgc cattgttcat aaacagcttg ccgcacgsag aatgaaaaat gacgaaacgt       780
     tccagcagta ttttttgtac atgaaagaaa ttgctttaca cgccagtgtc gaagatgaag       840
     ctttaatgga gtatgtcata gatgggatcc gtgactcgga aacaaataaa gctatattat       900
     atggcgctaa aaatattaaa gaatttcgtc agaagttaga cgcttacagc aacttaagga       960
     aaaggatcga taagaaaaat agtgttcgac agattaaccc tccgactgcg aaccctacag      1020
     ctgcccctac atcatcagga cgaaaaccta ttaataaaag atgttacaac tgtggtgaga      1080
     caaatcatct agcaccagct tgtacaaaag gaattaagtg ttttcgatgc aacgaattcg      1140
     gacacaaagg caacgaatgc ctkagtcagc ctaagaaaac tctgaacatc cagaaccaaa      1200
     aagtggaaaa gaaggctccc tataagatgg taaagattaa tggagttgag atgacwgcaa      1260
     taatagatac cggaagcgac gtaaacttaa tcaagattaa caaattgaaa gactttgaac      1320
     ctgatgaacc gaaatacgag aacaatccta aaatatgttt gactggtatt ggtgaaagag      1380
     aaataaacac agaaggacac tttgcagcta aattgcaaat agacgattgc tttattgaca      1440
     ccgttttcca tgttgtgaag gatgaaacta tacccttaaa tttgatactg ggcaatccaa      1500
     tactgcacga tttaaacata aactttacat cagatggaat aactgtagaa aaaatatcac      1560
     atctcacgct gttaatcgaa gagaagaatc cactcgaaga cttgaatata ggagacacga      1620
     tgtattctga aaatattaag aatgaagtaa aacaatataa agttggtgaa gctgaaaaag      1680
     aaagtaatgt tgaaatgaag atactactta ccgatgaaac cccaatttat caaaacccac      1740
     gccgattggc ccccctagaa aaagaaattg tcaacaaaca gatagaagaa tggacagaac      1800
     agaaaattat cgaacctagt aaatcagatt tcgcaagccc cgttgtctta gctaaaaaga      1860
     agaatggtca atatagatta tgtattgact ataggaagct caataagaag ataataaaag      1920
     aaagatttcc gttgccatta atagaagacc aactggacca attgaaagaa gcaaagctat      1980
     ttacatcact agatcttaaa aacggatttt tgcacgtgaa tgttcacaaa gatagccaga      2040
     agtacacctc attcgtaact cctcaagggc aataccactt cacaaaaatg ccgtttggac      2100
     tttgtacggc accatccgta tttcaacgat ttataaacaa tatcttccaa gattttatat      2160
     cccagggtat tgtacttgct tatctcgacg atttaataat accctcgaag actgaagaag      2220
     aaggattgtc gaaattgaaa ttagtactaa agagagcaga agaatttgca ttggagttta      2280
     attggaaaaa atgccatttt atgaagaagg aaatagaata tttgggttac atcatcaata      2340
     ataagaaaat tcaaccatcc cgtgagaaca tcaacgccgt ttcgaaattc aaaataccta      2400
     acgatgttaa atcattgcaa tcatttcttg gccttactgg atactttagg aaatttataa      2460
     agaattactc tttgattgcc agaccactta cagatttact caagaagaat gcagattttt      2520
     acttagatga aaactgtgaa aaagcatttt tagagcttaa aaacaaatta tgtagctcac      2580
     cagtactcag tatctataac ccgaattttg agacagagtt acacacggac gctagtgcaa      2640
     aaggttttgg agctgtactc ctacagaaag atcctgaaga taaccagatg caccccgtgc      2700
     actacatgag caaaaagact tcaccaacag aagaaaagta tcacagttac tatttagaga      2760
     ttttggcaat agtggaagca ataaagaagt tccgtgttta cctactcggt attcacttta      2820
     agatcgtgac agattgtaca gcattgacta tgactttaca aaaaaaagac ttacctccac      2880
     gagtagctcg ttgggccttg ctgcttgaag aatacgacta tgagatcgaa cacagaccag      2940
     gcttgagaat gaaacatgca gatgcgttaa gtagacagcc tgtttgtctc atacttactg      3000
     aaacaactgc tcgtattaag aaggcacaag aagaagacac acagattgac gtamttaaaa      3060
     kaatcctgga aaaagaacct tataaagatt atkttattga aaatggaata cttaccaaac      3120
     agaaagaagg aagaaaactg attgtagtac cgaagaagat gcaatacgac gtaataaaga      3180
     aaaatcacga gaaaggtcat ttttcaataa gtaaaaccga agaattgatt aaccgagaat      3240
     atttcattga agatctgaaa aagaaaatta aaaaagtaat tgataactgt atagaatgca      3300
     tattgatatc acacaaaaga ggaaagaaag aagggtactt acatccgttg gataaaggag      3360
     atgtgccatt gtcaacmtat catattgatc atcttggtcc gcttacatca acaaataaga      3420
     attacaagta cattttgacg attattgatg gttttactaa atttacatgg atctacccag      3480
     ttaaaacatt gacgactgat gagactttga gcaaactgat cacacaacaa caaacatttg      3540
     gmacgccgca aagaatcata tccgatagaa acgctgcctt tacatcaaac gaatttaaaa      3600
     attactgcag agaagaaaat atagatcatt atactattac aactggtcaa ccccgtggaa      3660
     atggccaagt agaacgtatc catcagatta ttattgaagt gttaagcaaa ctcagtatag      3720
     ccgaacccac caaatggtat cgtaatgtcg ctgctgttca acgtgcccta aatagtactt      3780
     ttcaaagaag tattggaatg acaccatttg aattgctcct tggagtacag atgagaaaca      3840
     aggatgacga gatatttaag ctgattgaag aggaaaatat tgcacgttat aacgagaata      3900
     gatctgaact gagacaaaaa gcaaaagaat cgatacagaa aatacaagaa gaaaatagaa      3960
     gaagttacaa taaaaacaga aaagaagcta accagtatga aattggcgac ttagttgcca      4020
     ttaagagaac ccaattcaca cagggtagca agttatatcc aaagtttttg gggccttatg      4080
     aaattgttaa gaagaaacga aatgatagat acgcagtgaa gaaagttggt gatggtgaag      4140
     gtccgattaa taccaccagt tctgctgatc ttatgaagcc ttggataggc caagattttt      4200
     attcatctgg gtcagatgaa gaagcaggat gaccg                                 4235
//
ID   Gypsy-3_MeUr-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-214
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3056-3056 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 214 BP; 64 A; 32 C; 34 G; 82 T; 2 other;
     tgtggtatag tttgagctat tasgattagt ttatttttaa ttttgtattt ttttattatt        60
     tatcccttcc gtagaaatta gttttgttaa aatagcaaca ctgaggagag gccgtcatcg       120
     actaatacga tgttagacgt gtatttgttt gctcccgata taataaaaga aatatcactt       180
     atttwgaagc atttcactag ccacaaatcc caca                                   214
//
ID   Gypsy-3_MoPha-I repbase;    DNA;    INV; 6346 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6346
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1089-1089 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           810..5696
FT                 /product="Gypsy-3_MoPha-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSQNGDSPRNEGQQPSGEIIESPEHEAVGIAETALRD
FT                 IRDATQHALRVVGDRGTHVVTERGTTADAREFSLISAEPNTTRDLNGRNRT
FT                 DNRLTSSPTTMAHSPAEASGNIPRNEVEAEILRLHNSLHEENDHAEERPAQ
FT                 RINPNLPPRETMLLHDVMHELRDLKFQLGLSRRDPGYQRRTEAPLRPQNFH
FT                 DHALDLSYGRSNNDIRNQRGSTVNFLSMKEARNMIPDIDGTQRNRVREFIS
FT                 AGTYAMKNIHPADEHTLLEAILCTKFKGKAMMDFYTRDVYSFEQLKRELEN
FT                 EYLSKRSTAHLQQEFNSLKQKPAESAQEFGRRVDLLAMELYESMEEGKNHT
FT                 IEQQRAILDNIKEQALYNYQIGLHEDIKLLVRAQRYRTLQDAISGASAEEK
FT                 VREPNRNRKEDPRTVPKYARNILRCGKCGKNGHDGRECRSSRYANRFELPR
FT                 PEGRPRVNTVELYCDHCKRAGHTRKECWSLHGRPKKKDNDRRSDKPKTMKR
FT                 IENGKRASKEIKMIKHAETASSDESSSDDASSSRTADAYRVTHVKHARGSD
FT                 TGLDMITLPVREAERGKIEFLFDTGSTVSLIKLKTLKGQTKIRDEHIKLTG
FT                 ITGHSIMTLGRTSVNVVMHDKKIKHPMYVIRDDAPIEYEGILGADFTRKNN
FT                 VTCNYGTKTVRLGDTKFKLYPYRRVTLQPRSETIVQVTASVNTLGVINSEE
FT                 MAPGVFLGSCLVEPENHTCPISIINTNDKKVDLQLPRVEIEKININNAPDT
FT                 HTANVIRDAWKHEIPIPRAERIIKLLQLKHLNEEEKKAIQALCEEFSDVFY
FT                 LEGDKLTYTTLVEHEIHTRTESASVNVRPYRLPEKQKTEVDKQIHEMLEQG
FT                 IIRQSKSQWNAPLLVVPKKPDATGKPRFRVVVDFRKLNEITIGDSFPIPNI
FT                 TDILDQLGNAKYFTTLDLAAGYHQISVAEKDKGKTAFSTPYGHYEFNRMPF
FT                 GLRNAPATFQRLMNSVLTGLQGLKCLVYLDDIVIYGPSLSEHYKRLAAVLT
FT                 RLRDSNLKLQPEKCEFMRKEVNYLGHVITEDGILPDPKKLDAVEKFPTPTK
FT                 VKDVQAFIGLAGYYRKFIENFSKIAKPLTMLTKKGEKFAWTTTQQNAFDTL
FT                 KIKLTTAPVLKYPDFSEEFLVTTDASDYAVGAVLSQGTVGQDRPIAYASRI
FT                 MNRAEQNYNTTEKELLAIVWAVKHFRPYVYGTKFKIITDHKPLVWLFNVTD
FT                 PGSRLIRWRLKLAEYDYEIIHKAGKGNTNADALSRHPVIEDTEHVNTVEDK
FT                 NRQEEEEEEEETTNRKYTEKEKEQILYEYHDAPLGGHQGIARTLKRIRLDH
FT                 NWRGITKDVEDYIAKCEHCQKNKLKAKTKMPMVITDTPKKPFEKCAMDIVG
FT                 PLTITTTGNKYILTFQDILTKFSKAIPIESQDANTVARAFATKIIFEHGIP
FT                 EKLLTDQGTNFTSEIFKNVCKLLKIEKMQTTAYHPESNGTVERSHRTLAEY
FT                 LRHYINTDQTDWDEWLPYAMFTYNTTPHTVTGLTPFELIYGHRATLPTALN
FT                 QPPRLTYSYDDYAQELREKLRASSRIAKEKAQEEKQKAKKQYDKKSKPAIF
FT                 KVGEKVLLFDETVRRGRSKKLDAKWIGPYKIIEKNNDVNYTIKMGRKTIRV
FT                 HANRLKLFIEE"
XX
SQ   Sequence 6346 BP; 2332 A; 1470 C; 1387 G; 1157 T; 0 other;
     aaattggtgg cagcggtggg atacaagaag ccgtcaagga caaaaaacat agaaaaaacg        60
     gatagaagaa gctgaaacta acaaaggacc agcaaatcca aaaaactcga aggaagcaca       120
     atcctgcgag aagaagacca gccgacagta agacgagctg agacagcacc atcgtgttat       180
     tcagtgcgcg agtgcaaaga tctgtgccaa cgcgtcacta cacggtgcta agtgtccttg       240
     aagaacgagc ttccctgccg gggaacggaa cggccgacta gccaacgaga ggtggaccac       300
     aacaaggggc gacgactaga caactgtaga ctacgaggaa aagcaacaca tcctactaca       360
     acgccgtacg cgccagtcca tccagcgagc tgacctacga caaccgccat gcgcgccgtt       420
     ctactaatgt aagtcagaat tgtaacaaat atttgcgcac tctttgtaat gtcccgtgcg       480
     aagggcaacg cgatcgagaa ataataattc agcagaaaat tgacaccgcg cgaaaaaaaa       540
     cgaggcaacg cgaagtttaa ccgcaaaaga aaacgcctgt caaaaaaaaa aaaaaaaaga       600
     gatttcattt tatatacgcg ccaatcaata atacagtatc agcgaataaa actttgattc       660
     gagtacaacg ctctagcacg tacacacgcg accgcgataa gacgcttagc cgtgcgtaat       720
     ccgactccac cgataatact cgggagacga ccgcgagaca tacagcatgc gagctgcaca       780
     ctgtctcgaa taattcaaac aaataattaa tgtcccaaaa cggagacagc ccgcgaaacg       840
     aaggccagca gccctcggga gaaataatag aatctccaga acacgaggca gtaggcatag       900
     cggaaaccgc gttacgcgat atacgagacg cgacgcaaca cgcgctacgt gttgtaggcg       960
     accgcggaac acacgtcgtc accgaacggg gaaccacagc ggacgcacgc gagtttagtt      1020
     tgataagcgc cgaacctaat acgacgcgtg acttaaacgg acgaaatcgg accgacaatc      1080
     gactgacatc cagtcccacg acaatggctc actctcccgc cgaagcgtcc ggaaatatac      1140
     cacgaaatga agtcgaagca gaaatattgc gacttcataa ttctctgcat gaggaaaatg      1200
     accatgcaga agaacgaccg gcacagagga taaatccgaa cctcccgcca cgagaaacaa      1260
     tgttattgca tgatgttatg catgaactac gcgacctgaa atttcaatta ggtctaagta      1320
     gaagagatcc gggttatcag agaaggacgg aagcacccct gagaccccaa aattttcacg      1380
     atcacgcctt agatttgtcg tacggacgat cgaataacga cattagaaat cagcgcggat      1440
     cgacagtaaa ttttttgagt atgaaagaag cgcgaaatat gataccggac atcgacggca      1500
     cacagcgaaa ccgcgtccgc gaatttatta gcgccggtac atacgcgatg aaaaacatac      1560
     acccagccga cgaacatacc ctgctagaag ccatcctatg cacgaaattt aaaggtaagg      1620
     caatgatgga cttctacacg cgcgatgtat acagcttcga acaattgaaa agagagctcg      1680
     aaaatgagta cctttccaaa cggagcaccg cacatctgca acaagagttt aactcgctca      1740
     agcagaaacc cgcggaaagc gcgcaggaat tcggacggcg agtggacctg ctcgccatgg      1800
     aactatatga gtccatggag gagggcaaga accacactat cgaacaacag cgagccatcc      1860
     tggataatat taaggaacag gccctgtata actaccagat cggtttgcat gaagacatca      1920
     aactcctggt acgcgcccag cgatacagaa cgctgcagga cgcgatatcc ggcgccagtg      1980
     ccgaagaaaa agtaagggaa cctaaccgaa atcggaagga agaccctcgc accgtcccca      2040
     agtacgcacg aaatattctg cgatgcggaa agtgcggcaa gaatggacat gacgggcgag      2100
     aatgccgcag cagccgatac gctaaccggt tcgagttacc gcgaccggag ggacggcctc      2160
     gcgtaaacac agtggaacta tactgtgacc attgcaaaag ggcaggccac acccgaaaag      2220
     agtgttggtc ccttcacggt cgacccaaga aaaaagacaa tgaccgccgg agcgataagc      2280
     ctaaaactat gaaaaggata gaaaacggca agcgagcgag caaggaaata aaaatgatta      2340
     agcatgccga gacagcgagc agcgacgaga gctcgagcga tgacgcaagc tcttcgcgca      2400
     cagctgatgc gtatcgtgtg acacacgtga agcatgcacg gggcagcgac actggcctcg      2460
     acatgattac actgcccgta cgcgaagcag agcggggcaa gattgagttc ctgtttgaca      2520
     ccggctcaac cgtgtcatta ataaaattaa aaacattgaa gggacaaacc aaaatccgtg      2580
     atgaacacat caaattgacc ggaataaccg ggcattctat tatgacacta ggaagaacgt      2640
     ccgtgaacgt ggtaatgcac gacaaaaaaa tcaagcatcc gatgtacgtc atacgagacg      2700
     atgccccaat agaatatgag ggcatactag gagctgattt tacaagaaaa aataatgtca      2760
     catgcaacta tgggactaaa acagtaagat taggcgacac caaattcaag ctgtacccgt      2820
     accgccgagt cactctgcag ccacggagcg agacgatagt gcaagtcaca gcgagtgtaa      2880
     acaccctagg agtcatcaac tccgaggaga tggcaccggg agtattctta ggaagctgcc      2940
     tagtagaacc cgaaaatcac acgtgcccaa taagtatcat aaatacaaac gacaaaaagg      3000
     tcgacctaca attacctcgt gtcgaaattg aaaaaataaa tataaacaac gcaccggata      3060
     cccacacggc gaacgtaatc cgagatgcat ggaaacatga gataccgata cctcgcgcag      3120
     agcgcataat taaactactt cagttaaaac atttaaacga agaggaaaag aaagcgattc      3180
     aagcactatg cgaagagttc agcgacgtct tctatctaga aggagataag ctcacataca      3240
     caactctcgt ggaacacgag atacacacca ggacagaatc tgcgagcgtg aatgtacgac      3300
     catacagact gcccgaaaaa caaaaaacgg aagtagataa acaaatccat gaaatgctag      3360
     aacaaggaat aatccgccaa agcaaaagcc aatggaacgc accattactg gtcgtcccga      3420
     aaaaacctga cgctacagga aaaccgagat tccgagtagt ggtagatttc cgaaaactca      3480
     acgaaattac aatcggagac tctttcccga tcccgaacat aacagatata ttggatcaac      3540
     tcggaaatgc aaaatatttc accacgctcg atctcgctgc cggatatcat cagatatcag      3600
     tagcagaaaa agataagggg aagacggcat tctccacacc gtacgggcat tacgagttca      3660
     atcgaatgcc gttcggatta aggaatgccc ccgcgacgtt ccaacgccta atgaactcag      3720
     ttttaacggg tttacaaggt ctcaaatgtc tagtatattt agacgatatt gttatttacg      3780
     ggccgagcct gagtgagcat tacaaacggc tagccgctgt gttaacacgg ctgagagaca      3840
     gtaacttgaa actccagccg gagaagtgcg agttcatgcg caaggaggtg aactacctag      3900
     gccacgtaat caccgaggac ggaattttac ccgatcccaa aaaactggac gccgtggaga      3960
     aatttcccac ccctacaaaa gtaaaggacg tgcaagcgtt tattggacta gcggggtact      4020
     accgaaaatt tattgaaaat ttttcaaaaa tagcgaaacc tttaacaatg ttaacaaaaa      4080
     aaggggaaaa attcgcatgg acgaccacgc aacaaaatgc gtttgacaca ctcaaaataa      4140
     aattaactac cgcaccggta ttaaaatatc cggacttcag tgaagaattt ctcgtcacta      4200
     ccgacgcgtc agattacgcg gtaggagcgg tgttatctca aggcaccgtc ggccaagacc      4260
     gcccgatcgc ttacgcaagc agaataatga atcgagcaga acagaattat aatacgaccg      4320
     aaaaagaatt attagcgatc gtatgggccg tgaaacattt tcgaccatat gtatacggca      4380
     caaaattcaa gataattacg gatcacaagc cactcgtatg gctatttaat gtgacagatc      4440
     caggatctcg tctgataaga tggagactca agctcgccga atacgattac gagataatac      4500
     acaaggcagg caaaggcaat accaatgccg atgcactgag ccgacacccc gtaatagaag      4560
     acacggagca cgtaaatacc gtcgaagata aaaaccgaca ggaagaagag gaagaagaag      4620
     aagaaacaac aaaccggaaa tacacggaaa aagaaaagga acagatatta tatgaatatc      4680
     acgacgctcc tctaggaggg catcaaggaa tcgcacgtac gctaaaaagg atacgattgg      4740
     accataattg gcgaggaatc acgaaagatg tggaagacta catcgcaaaa tgtgaacact      4800
     gccagaaaaa caaattaaaa gcaaaaacaa agatgcctat ggtgataacg gataccccca      4860
     aaaaaccatt tgaaaaatgc gctatggata tcgtgggacc attaacaata acgaccacag      4920
     gaaataaata tatcttgacc ttccaagata ttcttacgaa attcagcaag gcgatcccga      4980
     tagaaagtca ggatgcgaat acagtggcac gagcatttgc cactaaaata atttttgaac      5040
     acggaatacc agagaaacta ctcacagacc aaggtacgaa ttttacaagt gaaattttca      5100
     agaacgtatg caaattgctg aagatcgaaa aaatgcaaac tactgcatat cacccagaga      5160
     gcaacggaac agtggaaaga tcacaccgga ctctggcaga atatttgcgt cactacataa      5220
     ataccgatca aacagattgg gacgagtggc taccgtacgc tatgtttacg tacaatacga      5280
     caccacatac cgtaaccggg ctcaccccct ttgaattgat atatggacat agagcgactt      5340
     tacctacagc cctaaaccaa ccgcctagac tgacatattc ctacgacgac tatgcgcagg      5400
     agctacgaga aaaattgcga gcctcaagca gaatagcaaa agaaaaggca caagaagaaa      5460
     aacaaaaggc aaagaagcaa tacgataaaa aatcaaagcc agcaattttt aaggttggag      5520
     aaaaggtcct acttttcgac gaaaccgtaa gacgcggccg atcgaaaaag ttagacgcaa      5580
     aatggatcgg accgtacaaa ataattgaga aaaataatga cgtcaactat acaataaaaa      5640
     tgggacggaa aactatacgc gtacacgcga accgattaaa actattcata gaagagtaaa      5700
     ggactcacca agcagcagat ccaagcaaag attcaagtat aatcccaaaa taatccaaag      5760
     aaagaacaca acaaaatggt acactaataa aacttacact acacaaaaaa aaaatcacaa      5820
     acaaaatcca aaaccaaaca cccatacaca acagacgaag ttgacaaacg ccttaacaaa      5880
     acgacttact gcaagacgcg actgagattc tcgaatagtt agcactaata agtaccagcg      5940
     ctattgcgaa ttataaaaat actttatcgt ctgtaaaaca aatgtaataa ataagataga      6000
     tacaaaagca atatatgtat atacataacc acaacaaata ttgtaacacg aatcatctcc      6060
     caagcgagcg tgtaatctga gaaaaaaaaa aaacaactaa agactcttgg gtgcatgtaa      6120
     aaaaaaaaaa aaaccaaaaa ttaaccaaga gccttttttt ttttccttcg tcgaaaatga      6180
     caaccagcgg cgttaccgct ttaatcataa tagccatcat gatttacatg atatatacaa      6240
     aacaaactag caaaccacca aggcctaaca aagcaggttg tcatctgaga acaaagttgt      6300
     aagcgaaaac atcgcaccct cgttttctta tctaacgggg gaggga                     6346
//
ID   Gypsy-3_MoPha-LTR repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-581
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1167-1167 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 581 BP; 186 A; 172 C; 116 G; 107 T; 0 other;
     tgttgtaagc cgattacaac tatatctatt aaaattgcga cacgcatctt tcgaaagacg        60
     ttgcaagaag cacctctttc gaaagacgca caagaatccg ccgcgctcac ggaagcctca       120
     attaacttcc gtgagattac aacagcgcac tcggaagcag ttcgtatcgc cctagaaata       180
     ggccctacgc tgcaaaatca aaccgcaagg ctaccgcgtt ccgatgtcga aacgcttagc       240
     ctcgcggaag ctatcgacgc ccggtcactg gcccccgaaa ttgtgccaca tatcataata       300
     tataaacgcg accacgccgt gaccgagccg gagagaaaaa cataacaacg tccgagccgc       360
     gtcgcgtact atacacctta tcgcgagtga tacctaacac catcacagct gattgtaagc       420
     gcaagaaaca gaaataaaga caacgaacaa gcacgtaaga agcgtcttcc ttttcttata       480
     caccgagccg aaccatcacc ctttgggtcc caacccttca ggcagaacga tcccaactac       540
     cgacgggaaa gaattcccaa aacgagcaaa cgctcacaac a                           581
//
ID   Gypsy-3_MSe-I repbase;    DNA;    INV; 3940 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-3940
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 881-881 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 3940 BP; 1150 A; 1012 C; 895 G; 883 T; 0 other;
     tttggtgacc ccgacgtgat ggagaagacc gaagcaaacc aggaaacgaa gctcgaactc        60
     gacgtggcag ctgtctccat acagtccaga cttctacctt tctggcgaga aattcctcgg       120
     gcatggttcg tgcaatttga agccgttgtg gacccgctga agacttcgga tgatcaaaaa       180
     tatcgctacg tgctgcaaca gctacaggca acggacctcc agcacctcac agatattctt       240
     tacaatccac ccgcaactga caaatataat actttgaaga ctcgtttgtt agctgcgtac       300
     gaagactctg atgtcagaaa cttccaaaaa ctcaccagcg gcttagagtt ggtgatcaaa       360
     aaccctctca gctgctgcgc aagatgcgag agcttggtag agggatgatt acggatggcg       420
     gactgcgtat tgaatggatg aagcatctac ccgcccaagt acgcgttgtg ctctcagtta       480
     acaccgagtc gtcgctggag acactggcgg ccatggctga caagatggta gagtactcag       540
     aacccgccac agcaaagatt gaagcggtat cgggagaaac aagcgacccg ggggtaccca       600
     cacagttgga aatattggca aaacaaattg aaaggctgac cttggaggtt gctgaactgc       660
     gtggacggtc aatgcagcgt tactcacgca agagacgccc tgatcgttct cattcgagac       720
     ctcgacaacg cagtaagtcg tctaccaaac ctggcgaccc gacatgggag tgccggtttc       780
     actatcgttt tggtgataag gcacggcgct gcgaatcacc gtgctgcaga agacagaagc       840
     cgttaaacta gaacagacat cgaatgtggc gggcgtcgat gtccccaata ccacaaaccg       900
     cctatgtgtc tacgatcgcg acacgcgaga acgtttcctc gttgacactg gcgccgaaat       960
     atcagtgtta gcggccactc ctggcagaaa aatcaagaga tcaagtgact acagactata      1020
     cgcagcgaat aataccccca tcagaacata cggagagaag acgctcaggc tcaatctagg      1080
     ccttcgtcgt aatctgtcgt ggacattcgt tatcgccgat gtcaaaacct ctatcctggg      1140
     agcagacttt ctccgtcact acaagttgct aatcgatctt catcgaaaaa aactgatcga      1200
     caaggtcaca gaattagcaa tcgacgcctt tgaagtgaaa acattcgagg gaacaataca      1260
     catcattaac catgaccaag cataccacga catcctgatc cagtatccgg accttttacg      1320
     accgatgtca cttaaacagc cggtaaaaca tgatgtcgtt caccacatag aaacttcaag      1380
     cccccgctct tcgcccagcc ccgcccccct tcctccctga caagtataag gtggcaaagg      1440
     aagaattcaa caagatgcta gagatgggta tctgcacacc ctccaagagt ccgtgggcga      1500
     gccctctgca cgtcgtaaag aagaaggatg gaggtctacg tgtatgcggc gactatcgaa      1560
     gattgaacgc tgtcaccctg cccgaccgct acccgatacc tcgcatacaa gattttacat      1620
     atcaattgca caatatgaaa atattttcta aactagacat aaggatggca tattattgga      1680
     tcccgattgc caaggaagat tcccagaaaa cggcgataac cacaccgttt ggcttgtttg      1740
     aattcaaatg tatgacgttc ggattacgca atgccagcca aacatttcaa aggtttatgc      1800
     acgaggttct acgaggcata gacaattgtt tttgttttgt cgacgatatt ttattatatt      1860
     cgatggacga agagagccac aaaaatctat tacggcgagt cctagaacgc ctcgataaat      1920
     atggtatcac tttaaaagtc gaaaaatgcg agtttggaaa agaaagaatc aattttcttg      1980
     gctacaacgt gtctgctgat ggcatacaac ccactgatga acgtgtcaag gccatatcca      2040
     gctacccaaa accaaaaaca gtcgccgagt tacgccgttt cctgggcatg atcaattttt      2100
     atcgtagctg tttgccacat caagcggagc tgcaaactga gcttaacaaa tatttgcaag      2160
     ataggaaacg caacgacaag tcaccgatag agtggaacgt agaagctaat gaagctttcg      2220
     aaaagtgccg acaaagcatt ttgaaagcca cgactttggc gcacccagtc atcggtgccc      2280
     cactggcaat aatgacagac gcctctgact gcagccttgg tgccgtattg caacaaaagg      2340
     tgggcgatgt gtggaaacca ctcgcatatt tttccaagac gatgagccca acacagcgtc      2400
     gctacagtgt ctatgatcgc gaattactgg ctatttacac tgcggtgaaa cactttcgac      2460
     gacttataga aggctgcgaa gtgaccgtat tcactgacca taaaccgtta gcttatgcac      2520
     tcaaacgtcc tgcaagcagt accgacacgc caaagagaga gaggcagttg cactttatca      2580
     gccaattttg tggaaacata gaatatgtgc gcggcgacga aaatgcagtg gccgacgcat      2640
     tgtctcgcat cgaagaatta caatgtcctt cccccatcga ttacgaaaag ctatctctcg      2700
     atcaacgcgg cgatcctgaa ctagagcaac ttgaaaagca agccaatttg aacttcagtg      2760
     acgtcaccga acaaggaaac aaccgaccaa tcagatgcga gatgtccact ggcaaacctc      2820
     gaccatatct gccgccaata tatcgttttg ctgcattcag agcgcaacac gatttgtgtc      2880
     acccaggtat cagagccaca cggaagcaga tcagtacgaa attcttttgg ccaaacatga      2940
     acaaagacat cagcaactgg gccagagcat gccttgactg tcagcgagcc aagatacacc      3000
     gccatgtaac cacaccttta ggcgaatttc cgccttctga gcgtttcgaa cacatacatg      3060
     tcgatattgt gggaccactg cgattgtcta ataattgtcg ctactgtctt actatcatcg      3120
     atcgttgcac caggtggccg gaggcaattc cactagttga catcacggcg gaaaacgtaa      3180
     cgaaagctat atacaacaac tggattacaa gatttggatg cccgtcacgc atatcaaccg      3240
     atcaaggccg gcaattcgag tcgcaacttt tcaactcact gatgaagaag tttggcatct      3300
     cacgcatccg cactacagcc tatcatccac aatccaatgg ccttatcgaa agatggcatc      3360
     gaaccttgaa agcagcacta atggcccgcg gtaactccgt tcagtggacg gatgaattgc      3420
     ctacagtgct tttgggatta cgcaccgcac tccgccccaa cggaaaattt agcccggcaa      3480
     tgatgacata cggaacaaca ctccgtttac cgtctgattt catcatcccg acggctaagt      3540
     taagtcatga ggaaaatgac tacattcgtc ggcttatgga caccatggca tcgctcaagt      3600
     ctacatcttg ctctaacagt actggacgag agccgttcgt gcacaaagac ctggcaacgt      3660
     gcacacatgt tttcgtgcga aacgatcaag tcgttcctcc gctgactccg ccctacgacg      3720
     gcccttacga agttatcaag cgttatgaca aatactttaa gatcaagtta ccgcttcgtt      3780
     cagctgtgat atcgctagac aggcttaagc cagcctacat ctgcactgaa acgatcgagg      3840
     agacagccga ccttagtttt cgacagtcta accagcccta cgtcaccaga tccgggagag      3900
     tggtaaaacc aaatgtacgc ttcgcttgag gggggagtga                            3940
//
ID   Gypsy-3_MSe-LTR repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-396
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 872-872 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 396 BP; 101 A; 101 C; 95 G; 99 T; 0 other;
     tgtgggatct acccacataa ccacatatcg ctgttaagca tgcgaactgg ctacagtggg        60
     tgcaatctca caccgcgtac atggagcgca aaatgtctgt ccaatcgaac aaaccaagac       120
     ggtacgtggc gtgctcaccg gcatcggacc tgaggtgcaa tcagccatcg gcgcgctgag       180
     gcgcacatat ttatagtgtg cgagcgggcg cgctataggt tcgtgcgaga gagatggact       240
     gctgcccgcg cgcactcatt ggttgtgtca accttactgg cgttaagcaa ttgatataaa       300
     tatagggcac ctgtatcaat aaatcattca ttattaatcc gagcttcgag tttcattcgt       360
     ctccaacaat taccatattc attctgtgtc cctaca                                 396
//
ID   Gypsy-3_OrIn-I repbase;    DNA;    INV; 5024 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5024
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1544-1544 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..3778
FT                 /product="Gypsy-3_OrIn-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="CLFSRLIFILTQKLVINASMCRLRKDDPPIXCNAHDK
FT                 SVQTECEPSQFELMVNMTKGGAMHSDTSDHRNSLISEISADQFSLDLCDEE
FT                 EIELFGGVLGGHRAEVPGLDFSTENLSASEPLEVMPVSNADFDSIHTDIPV
FT                 NQRKELLDILHKYSQYFIDGIPTSRVKSGEFSIRLIDPSKIIHRRPYKLSP
FT                 VQREAVRERILELEAANVIRPSSSPFASPILLVPKKTGGYRLAVDYRMLNS
FT                 NTVPDRFPLPLISDQIARLSGSTFFSCLDMASGFHQIPVETNSIEKTAFVT
FT                 PDGQWEFLAMPFGVRNGPSVYQRAIMKALGDLTFNYVVCYMDDLLITASSQ
FT                 AEALDRLDKVLDVLTSAGFSLNLSKCSFIVSKMKYLGYEINNGELRPNKTK
FT                 IEALTKLSPPTNLRSLRQFLGLASYFRHFVRNFALIAAPLFRLTRKTDNDS
FT                 KNRPIDWTESHEEVRQQLIGLLTSEPILTIFDPSHPIELHCDASSLGFGAI
FT                 LINIVNKKPKPVAYYSKRTSPAESKYHSYELETLAVVYAIKHFHNYLQCYH
FT                 FTVVTDCASLRASQSKQDLIPRVQRWWSFLQCFDFKLEYRPSARMQHVDFF
FT                 SRHPMDADETVNLPVLESPEEISQSLTVESPKEIPQSLTVVNLDNQKMRPH
FT                 GKLRNVKDSRSVESCEKRVDLTAISTDWLLTAQQTDPFISDIVQKLGNDEI
FT                 HPDLQNTYEMHSGILCRKVQRHTRTRFLPIVPHSLRYAVVSNVHDSIFHLG
FT                 YEKTLEALYQHYWFEHMAKYVRKFVDNCLVCKTSKTDSGPRQIQLHPIPKV
FT                 SEPWHTLHLDATGKLSGKKDSKEYLYVFIDAFTKYCVLQHTRSLDATSSIK
FT                 ALTAVINFFGPPQRIICDQGTSFTAKDFQDFCVSHQIDLHFIATGASRSNG
FT                 QVERLMSTLRNMLTVAEADEHKTWQSCIGHIQLALNTTPHSTTKISPLQLM
FT                 FGRVSRPLQLISVTGHLTDQPSPDLQDLRETAAQLIDKQAVTSKARFDIGK
FT                 PAVKRFNDNDLVFAQTEVRNRVKLDDAYRGPYKIVQVLPNDRYKLQSVTGK
FT                 SKKFLKYPHERLRKAPSMTDTSLPDDGESSE"
XX
SQ   Sequence 5024 BP; 1252 A; 1116 C; 1022 G; 1632 T; 2 other;
     tcagaagtgg gatcaccaga ttctctacgc tacgtttgga tgattaacca ggtgataata        60
     acaatatttt ttaaatgaaa attgcccgcc ttcgcttcaa gttcagtcaa tcagttcttg       120
     gctcgtcaca gccactcttc cttggaggaa atggccgtct catcagaaag gaggaggtgg       180
     tggcccatca aaaaggtacc aaccttctcc caacgtaaaa ccttcatctg ctcccagatg       240
     tgggaaattt tcttcagaat gccggtccca gacgaccagc gacaacacga cctgctattc       300
     ttgtttggag aaggggcaca ttgctcccaa ctgcccgagg aagaagaacc tgaccagcgg       360
     ccagcagtcg tcgctgaagt catcgcagca agccgagaag ctcgtcggcc tctgtgtggc       420
     taaccgagaa ggcaccttcc ttcataaggg tgatattttt caaatattwt tttgattcgg       480
     ggtcagaatg ctcactcctc tgtaaatctg ttgatgcctg ttttcacggc ttatttttat       540
     tctcacccag aagttggtga ttaatgcctc aatgtgtagg ctgcggaagg atgatcctcc       600
     gattmtttgc aacgctcatg ataaaagcgt gcaaactgaa tgtgagccca gtcaatttga       660
     attaatggtt aacatgacca aaggaggagc tatgcattct gacacctcag accatagaaa       720
     ttccttgata tcagaaatat cagctgatca attttccctt gatctttgcg atgaagagga       780
     gattgagctg ttcggtgggg ttttaggcgg tcacagagct gaagtccctg gccttgattt       840
     tagtactgaa aatctttcag cttcagaacc ccttgaagta atgccagtaa gcaatgctga       900
     ttttgatagc attcacactg atattccggt taatcaaaga aaagaacttt tagacatttt       960
     acataaatat tcccaatatt ttatcgatgg gatcccaact agtcgagtaa aatctgggga      1020
     attttctatc cgtttaatcg atcccagtaa aatcattcat aggcgtccct acaaattaag      1080
     tcctgttcag cgggaagctg ttagggaacg cattttagaa ttggaagcgg ctaatgttat      1140
     ccgccccagt tcttcgcctt ttgccagtcc aatattgcta gtcccaaaga aaacaggggg      1200
     ctaccgactt gccgttgatt acagaatgct aaactccaat acagtgcctg atcgctttcc      1260
     ccttccactg atttccgacc aaattgctcg tttaagtgga tcaacatttt ttagttgtct      1320
     tgatatggca agtgggtttc accagattcc ggtggaaaca aattcaatcg aaaagactgc      1380
     ttttgttacc cctgatggac aatgggaatt tttagctatg ccttttggtg tgcggaatgg      1440
     ccccagtgtc tatcagaggg ctattatgaa agccttaggt gatctgacat ttaattatgt      1500
     cgtttgttac atggatgatc ttcttatcac agctagttct caagctgagg ctttagatcg      1560
     cttagataag gtccttgatg ttctaacatc tgcaggattt tcccttaatt tatcaaaatg      1620
     ctcttttatt gtgtccaaga tgaaatatct tggatatgaa attaataatg gagagcttag      1680
     acctaataaa acaaagattg aagctcttac aaaattatca ccccccacta atcttcggtc      1740
     ccttcgccaa tttcttggct tagcctccta tttccgacat tttgtaagaa attttgcact      1800
     aattgcagcc cctttattta gattgactcg aaaaactgat aatgatagta agaaccgccc      1860
     gattgattgg actgaaagtc atgaggaagt taggcagcaa cttattggcc tgctaacttc      1920
     tgagcccata ttaacaattt ttgatccctc gcacccaatc gaattgcact gcgatgcaag      1980
     ttccttggga ttcggtgcta ttttaatcaa tattgtaaat aaaaagccaa aacctgtggc      2040
     ttattacagt aaaaggactt ctccagcaga gtcaaaatac cattcctatg aattagaaac      2100
     acttgcggtg gtctacgcta ttaagcactt ccacaattat ctgcagtgtt accattttac      2160
     cgtagttact gactgcgctt ctctccgtgc ttcgcaatct aagcaggacc taataccccg      2220
     tgtccaaaga tggtggtctt ttctgcaatg ctttgatttt aagctagagt atcgaccatc      2280
     tgcccgaatg caacatgttg atttttttag tcgtcatcct atggatgctg atgaaacagt      2340
     caatcttcct gtgcttgaaa gccctgaaga aatatcccag tcattaacag ttgaaagccc      2400
     taaggaaata ccccagtcat taacggttgt taaccttgat aaccaaaaga tgagaccaca      2460
     tgggaaattg cgaaatgtta aagattctcg tagtgtggaa tcctgtgaaa aacgtgtgga      2520
     tttaacagca atttctactg attggttgct taccgcccaa caaactgatc catttatttc      2580
     ggatattgtt caaaagttag gcaatgacga aatacaccca gacctgcaaa acacctatga      2640
     aatgcattct ggtatcctgt gccgtaaagt tcaaagacat acccggacta gatttctccc      2700
     gatagtccct cattcccttc gatatgctgt agtttcaaat gttcatgatt ctatttttca      2760
     tctcggatac gagaaaactt tagaagcatt ataccaacat tattggtttg aacatatggc      2820
     aaaatatgtt cgcaaatttg tcgataactg ccttgtgtgc aaaacgtcga aaacagattc      2880
     aggtcctaga caaattcaac ttcacccgat acccaaagtt tctgaacctt ggcataccct      2940
     tcacttagat gccactggta aattgagtgg gaaaaaggat tctaaagaat acctttatgt      3000
     ttttattgat gcttttacaa aatattgcgt tttgcaacat acccgttctt tagatgccac      3060
     tagttcgatt aaagctttaa cagctgtcat aaatttcttt ggtccgcccc aacgtatcat      3120
     ttgtgatcag ggtactagtt ttactgccaa agacttccaa gatttttgtg tctcccatca      3180
     aattgacctc cattttatag cgacaggtgc ctcgcgctcc aacggtcaag tggaacgtct      3240
     tatgagcacc ttacgcaata tgcttacagt tgctgaagct gatgagcata aaacatggca      3300
     atcttgtatt gggcatattc aattggcact taatactaca ccacacagta caactaagat      3360
     atccccactc caattaatgt ttgggagggt ttccagaccc ctacaattaa tttctgtgac      3420
     tggccaccta accgatcagc cttctcccga tcttcaagat ttgcgtgaaa ctgccgcaca      3480
     gttaattgat aagcaagctg taactagtaa agcaaggttt gatattggaa aacctgctgt      3540
     gaagcgtttt aatgacaatg atttggtttt tgctcagaca gaggtgagga acagagttaa      3600
     attggatgat gcctatcgtg gcccttataa aattgttcaa gttttaccta acgatcgcta      3660
     taagttacag tctgttactg gaaaatctaa gaaattttta aaatatcccc acgaacgttt      3720
     gcgcaaagct ccttctatga ccgatacgag tcttcccgat gatggggagt cttctgaatg      3780
     acatttggca ttttgctgta tttttggtga ccttggatgc gccaggtcga tttatgattc      3840
     cgccttaatg gctggttatt gtttttactc tcagtgacat ttggcatttc gctgtgtttt      3900
     tggtgacctt ggatgagcca ggtcgattta tgattccgcc ttagtggctg ttgttttatt      3960
     tcgcctcgtg gctttcgcct tagtggctgt tgtttttaca cagtgttttt gccggtgtgc      4020
     tgagggttgt aaataggcag ttggggtctc taccttgctt ggcgccttac gtcggctccg      4080
     tcatggttga acactctctt cgttcttccc ctttacgatg ccggcgtctc acagtctctt      4140
     cttttctgat agagggattg tcaagtccaa gtgagttcga gcctctctgt ccttcctact      4200
     tcttttctct gacttctgca gttgtagtct ctaccttgct tggcacctta cgtcggctcc      4260
     gtcatggttg aacactctct tcgttcttcc cctttacgat gccggcgtct cacagtctct      4320
     tcttttctga tagagggatt gtcaagtcca agtgagttcg agcctctctg tccttcctac      4380
     ttcttttctc tgacttctgc agttgtagtc tctatcttgc ttggcacctt acgtcggctc      4440
     cgtcatggtt gaacactctc ttcgttcttc ccctttacga tgccggcgtc tcacagtctc      4500
     ttcttttctg atagagggat tgtcaagccc aagtgagctc gagcctctct gtttatcttc      4560
     ctaatttttc cctgacttgt tcttgttatt tgctgagctt gtgcgcactt cgttcgttgg      4620
     ctctttgttt gtttgtccct gtgtgacgaa ttgcactatg tgtgcaacgt tacagatatg      4680
     ttatttttat ttgactgttt tgcgattgtt gtgacgcatt gcgctatgtg tgcaacgtta      4740
     cagatgttat ttttatttta atgttttgcg atcgttgtgt gacgatttgc acgttaccga      4800
     tgtgttcttt ttattttact gtacttaact gttcctttgt actacactgt ctgttcctcc      4860
     tctctgtgca gcgccttatg cgtttttctc ttgtgtgttc atgcactttc tatgcgtatg      4920
     gcatttcttt tgtaggttct ggcacggatc atgttagccg tcctacctaa tttgctgctc      4980
     cttgcttggt gctcccgagg acggaagcaa tgtcaggatc gccg                       5024
//
ID   Gypsy-3_OrIn-LTR repbase;    DNA;    INV; 522 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-522
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1528-1528 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 522 BP; 132 A; 99 C; 86 G; 205 T; 0 other;
     tgtgatgtgt agcggcatcc catcttcaga aaccatccct tctagggaca gcgctaccta        60
     tcgagcgttt acttttgttt acttttattt caaattaatt tacttttgaa tttcaaatta       120
     attattgttt aaattatgaa actttaattt attcattatg tttttaatta ttttaatatt       180
     taagtttatt atttctcgaa acacttttaa gtgtcgcctt gagccgctca agccacccct       240
     gacggacgcc atattattat tacacagaga tttgtacaaa acgcatgttg ctaaccacgt       300
     tttgaatata ttgtgaatta tcatctttaa ttattgtttt ctgtttttgt tttgaactaa       360
     atattgtttt ttcgtccgtc aagggggagt gcgctcgtcg agagttaaat aaagacttat       420
     tgtttctcat tgactgtttt tttcgttgat aattctccgg cccacatggc ggattctgac       480
     ccggaagagg gccaaatcct cgaattctct ccggccgtct ca                          522
//
ID   Gypsy-3_OsLi-I repbase;    DNA;    INV; 8458 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-8458
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2013-2013 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..1869
FT                 /product="Gypsy-3_OsLi-I_1p"
FT                 /translation="MQNPIDAGEGPSGERPRSPENAGEFSDTWRDTRNVGF
FT                 ETRKNDDRDHGDLSTMVMESFAVQQAAHHVPIFDGRNIRLRDFISEIQYHY
FT                 DSLPPTGRRTFLRLVISRLRGEARDSVDGLRFLTIGELVRHLKYRFTPEKT
FT                 FNDYYRQLTEIRMRRDESVFAFHDRIRGVLTGIEDVLRRDYGSEATGMIKP
FT                 VKSTAIDAFIYGLPDELARAVEARNPKTLKDAVEVAVQVENRQRQRPLASR
FT                 DYYYRPAYESRREHYDDYRPRYQSPDRDRSYPPRYNSFSPSRREQPPERTN
FT                 FGSPIRDAGRTREFRPSSPIRTFRADSAVRRAPHYCPDCRCGGRSPTRRES
FT                 PEPRSRNDYRRPRTPPLEEPVPGPSRERLRSPSPDPRGNLNLGATRRTDAT
FT                 TSLNPQERQPKVQFQKRRFLQ"
FT   CDS           1770..6464
FT                 /product="Gypsy-3_OsLi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FKLGCDSPDGRDDEPKPAGASTQGSVSKETVLAIEAK
FT                 RATPIVKIPSDDLEPGTALFLVDTGAEINLIKLNLLRADLPIATHEATIIS
FT                 GITPQKDRTIGTTTLHVQGQPVRFHVVRSDFPLITDGILGQEYLQQEEAAI
FT                 SFAHNTLVTRTEPIKPFRFINYNTLNHAERRDLKPRTYVIKARSRQSIGID
FT                 VVNNNLREGYLPLLDTVDGLYVGRAAVAVNDQGVCHVLAINTLECDLKLEV
FT                 PPQELIPFDYHNFPEESDDPDTDRENPVTADRVTEVLNKLRLEHLNSEERD
FT                 HVCDLVEEFPERFHLPTDRLKATTFIKHSIPTVDEVPINTRQYRFPPVHKD
FT                 EIERQILTKLASGIIVPSNSPYNSPLWIVPKKPDSKGNPRWRMVIDFRKLN
FT                 EKTVGDAYPLPNMTEILDLIGNAQYFSVFDLASGFQQIETDPKDRHKTAFS
FT                 TPTGHYEYVRMPEGLKNAPATFQRLMNQLLRGLQGIELFVYLDDIVIFAKT
FT                 LEEHGKKVRRLFTRLADAGLTLQPDKCEFLRTEVAYLGHVIGRNGVRPDPK
FT                 KISAVKNFPRPRNAKNIRQFLGLAGYYRRFIKDFAAKSKPLSDLLKKNVPF
FT                 VWGKEQRIAFIALRKALCSAPILQYPDFQKPFTLTTDASDFAIGAVLSQEI
FT                 DGHDLPVAYLSRTLTKPERNYFTTEKECLAILYAVLHFRPYLYGRKFKLVS
FT                 DHEPLRWINSIKDPGQRLVRWRLKLRDYEYEFVHKPGKLNTNADALSRNPV
FT                 NEAELNESDAFTLSSSSETEREKEEPSSVVKLIHRFLTTTAQVKEARRRSG
FT                 YANLLPISESPRSSDSETPAVVVRRGRGRPPGTKNKPKPTPIIDTEGIATR
FT                 TRLRSAKQSVSLTSPDIPNPTIIVTSNTPTDTDVTSDNPTDIDTDSDAGTP
FT                 IYLRRRSVLPGLGLSSRQRITGVSRTPAPDSATSDSDQDCFKTPITSESKT
FT                 HFEEPPNENAADKDQVEADADHLYHPDGLSHLTKTLSDTVIHRPLQQSQLP
FT                 ANLPSTPPIALSTPNRNRLSEKVSEQQENQIIIPADLPIEGSTSDSLVDLD
FT                 LPYLDAPENRAIVGAKTVHFACENLTYHRDNYVHFISKDLLLTPISKLLVE
FT                 IGIIDFETFKGPELKVGTIFVTKRGSNHVFSIVVKDNINDDLPLARLESIL
FT                 SKLKQKMSELKIESFRISRFDDLTENLPQDVLSSTLRKIFGQSGIKITLCY
FT                 GRVQVPPTEIRSDIIAELHNSLVGGHKGVTKTYQRIRERFYWPNMRQQIEA
FT                 YIQNCHSCQTRKISRKRTREPMIITDTPVEPFAKVSLDTVGPFPRTPDGNK
FT                 HILTVQDNLTKFCIAVPVPNIRAETIAHALVTNLILQFGAPKVILSDRGTS
FT                 FLNRVISAVAKMFGIHHLTTSGYRPQTNGSLERSHAVLVDYITHYLGDFDD
FT                 WDRLVPFAMFAYNTSVHEGTKFTPFELVYGKRARAPTAFPASDDLPTYEGY
FT                 VRDLNDRLHEMQGIAGQNLVKAKKRSKTYYDATARPFKGRVGDVAYVLVEP
FT                 RKGKFGKRYHGPYEIIEFTPNKNVVLKDEIGNVFSKHVDKLKFWKPRNV"
FT   CDS           6686..8410
FT                 /product="Gypsy-3_OsLi-I_3p"
FT                 /note="RNA recognition motif (RRM) and F-box."
FT                 /translation="MASTSSSTYRDTRQENRGRRVFVTRIPPFAQKGSLMT
FT                 LFRAFSPDQAVVVRKPTGTYGFITFPTAELALRAVQWVEATKPIFHKRKIK
FT                 AAIADSWNEAALLRPRGRPDPFPGWEPRTSPPLPEEVLARIARFLNFADRA
FT                 RMEGVCRAWRAGALASYASERVLSTTDQRWPQGWAHPSVDTEGLRWAIMRL
FT                 GPYVSELRLDDRWVAERLRPQVLGIAARGCPRLTTIDLTGATVRPSALRDL
FT                 ASNAERLQRFYLGRTIGNVEPELSGVFVAAPRLASFVATGSGFAGAALSRM
FT                 APTLQEVRLRDCASLSSASVAACLAAQRSLSSVELAQCRALSSAEPLDALM
FT                 NNEDLHRSVQEFVVIDIDFAPIIDGAEEEEIPDAADVPDPVFIELQLGPVE
FT                 AARSLPELFRQLTILRVLFCGWVDVTFIRSVGEHLHQLLELDISGCSNVRG
FT                 QFALESLGNLPRLEKITINNLHPTVSAPALATIATLEEVRARDSQGITDED
FT                 TTAIVRGCSRLVALDVEGCLGVTNQTVIESTEIVRRQGRATVLSLSVGGTS
FT                 VDRWVRVRPSLVLRVLYDRVYQPILRDF"
XX
SQ   Sequence 8458 BP; 2314 A; 2011 C; 2064 G; 2069 T; 0 other;
     aaattttggt ggcagcggtg ggatgctcag tgctggctca ttgaatctgt gtaatttaag        60
     gtgtttgaaa atttttcgta tttccgtatt aatcactttt acaatctctg aaatcacaat       120
     tgaggcaaaa ccgggacatt atagataccc ccttttgcca gacttgccgc actgcgaaag       180
     tgtattatta tttgtgtaat ttgtgaaatt attatttata tcatatttat atacatatat       240
     gtgtgttgcg ataattgttc atccaaggtg aatttaagtt tccaaatatc tggttcgagt       300
     caaaattatt tgtttattta tttatttatt tattcattca attatttatt catctattta       360
     attatttatt taattatatt taatttattt tgtgttttgt cgaaatttct gtttcattga       420
     aattaattct gatatatttt ctgatatatt gaacaattat cgccaaattt tcgatttttc       480
     ccgtattctg atatttttga tatttttgat tttggtctat ttgatttgaa tactggttgt       540
     tatattctat atttttgtgt ttgtgttttg atatatattt gaatttgaat ccgtatacat       600
     ttttcgcgta ttaaaaattt caaaatgcaa aatccgattg acgctggcga aggcccgagc       660
     ggagagagac cgcgatcgcc cgagaacgcc ggtgaatttt ctgatacctg gcgagatacc       720
     cgaaatgtcg gttttgaaac gcgtaaaaac gatgatcgcg accacggcga tttatccact       780
     atggttatgg aaagctttgc cgtgcaacaa gccgcccacc acgttccgat ttttgatgga       840
     cggaatatcc gtctccggga ctttataagc gaaatacaat accattacga tagtctacca       900
     cctacgggaa gaagaacttt ccttcgactc gtaatttcgc gtctaagggg ggaggcacgc       960
     gacagcgttg acggtctacg ttttctcacc ataggagaat tagtccggca cttaaaatat      1020
     cgtttcacgc cggagaaaac gttcaatgac tattatcgac aattaaccga aatacgcatg      1080
     cgacgcgacg agtcggtatt tgcgttccac gaccgaataa gaggagtgtt aacgggtatc      1140
     gaagatgtgc tcagaaggga ttacgggtca gaggctactg ggatgattaa gccggtaaaa      1200
     tcgaccgcga tagatgcgtt catctatgga ttgcccgatg aacttgcgag agcggttgaa      1260
     gcgcgcaatc cgaaaacgct aaaggacgcg gtagaagtcg ccgttcaggt agaaaatcgt      1320
     caaaggcaac gtccgttagc atcgcgtgat tattactatc gtccagctta tgagtcgcgt      1380
     agagaacatt acgatgacta tcgaccgcga tatcagagtc cggatcgtga tagatcgtac      1440
     cctccgcgat ataacagctt ttcaccatct agacgtgagc aaccgccgga gcgcacgaat      1500
     ttcggatctc cgatcagaga cgcaggtaga acgcgggaat ttcgaccatc gagcccgata      1560
     cgaactttcc gggcagattc ggcagttaga agggctccgc actattgtcc agactgtcgc      1620
     tgtggaggaa gatcgcccac aaggcgcgaa tctccagaac cgcgttcgcg taatgattat      1680
     cgtagaccgc gtacaccacc gttggaggaa ccggtacccg gtccctcgcg tgaacggcta      1740
     agatcgccgt caccagatcc acgcggtaat ttaaacttgg gtgcgactcg ccggacggac      1800
     gcgacgacga gcctaaaccc gcaggagcgt caacccaagg ttcagtttca aaagagacgg      1860
     ttcttgcaat agaagcaaag cgtgccacgc caatcgtgaa aattccttca gatgatttag      1920
     aaccgggaac cgcgttattt cttgtagaca ccggcgcgga aataaatcta atcaaattaa      1980
     atcttttgag agccgactta cccatcgcga ctcacgaggc gacgattatc tcaggcataa      2040
     cgccgcaaaa agatcgtaca atcggcacaa cgaccctgca cgtgcaaggg cagcctgttc      2100
     gcttccacgt agttcggtcc gattttccct tgataaccga tggaattttg ggacaagagt      2160
     atcttcaaca ggaagaggcc gcgatatcgt tcgcgcataa tacactcgtg acgcgtaccg      2220
     aaccgattaa gccatttcgt tttatcaact acaatacgtt aaaccatgct gaacgtagag      2280
     atttgaaacc gcgcacttac gtcatcaaag cgcgcagtag gcaatcgatc ggtattgacg      2340
     ttgttaataa taatttgcga gagggctatt tacccctgct ggacacagtg gacggcttgt      2400
     atgtcggcag agccgcagtg gcggtaaacg accagggggt atgccacgtc ctcgcgatta      2460
     acaccctaga gtgcgattta aaattagagg ttccgccaca agaacttatt cccttcgatt      2520
     atcataactt tccggaagag tcagacgacc cggataccga tcgagaaaat ccggtaacag      2580
     ctgatcgagt taccgaggtc ctcaataagt tgcgtttaga acacttaaat tctgaagaac      2640
     gtgatcacgt gtgcgaccta gtggaagaat ttccggaaag attccacctt ccgacggata      2700
     ggctaaaggc aactaccttt attaaacata gtattccaac ggttgacgag gtgccaataa      2760
     ataccaggca atatagattt cctcccgtcc ataaggatga gatagagagg cagattctaa      2820
     ccaagttagc tagcgggata attgttccgt cgaattcgcc atataattct cccctgtgga      2880
     ttgttccgaa gaaacctgat tctaagggca atcccaggtg gagaatggtg atcgacttcc      2940
     ggaaattgaa tgagaagacc gtaggcgacg cgtatccact accgaatatg actgagattc      3000
     tcgatttaat tggaaacgcg caatactttt ctgttttcga tctcgcgagc gggtttcaac      3060
     aaatagagac ggacccaaaa gaccgtcaca agaccgcgtt tagcacacct acgggacatt      3120
     atgagtacgt tagaatgccc gagggattga agaacgcgcc agcaaccttt caacgattaa      3180
     tgaatcaatt gcttcgcggt ttgcaaggca tagaattatt tgtatactta gacgatatag      3240
     tcatcttcgc gaaaacgttg gaggaacacg gaaagaaggt ccgacgcctg tttacgcgcc      3300
     tggccgacgc cggtttaacc cttcaaccag ataaatgcga attcttgcga actgaggtcg      3360
     cgtatctcgg acacgtgatc ggtagaaacg gagtccgacc ggatccaaag aaaatatccg      3420
     ctgttaagaa ctttccgcga cccagaaacg ccaagaacat tcgtcaattt ctaggcctag      3480
     cgggatacta ccgccgattc attaaagatt ttgctgctaa atcaaaaccg ctttctgatc      3540
     tgctaaagaa aaatgtaccc tttgtttggg gaaaagaaca gcgaatagct tttatcgcgt      3600
     taagaaaagc actctgcagc gcaccgatct tgcaataccc cgattttcag aagccgttca      3660
     cgctcactac ggatgcgtcg gacttcgcca tcggggcggt acttagtcaa gagatcgacg      3720
     gacacgatct acccgtcgca tacctttcgc gtacgctcac aaaaccagag cgaaattatt      3780
     tcactaccga aaaagagtgt ttagcgattt tatacgccgt gttgcatttt cgaccttatc      3840
     tttacgggcg taaattcaag ctagttagcg atcatgagcc tttaagatgg atcaattcga      3900
     tcaaggatcc agggcaacgt ttagtccgtt ggcgtctaaa gctacgcgat tacgaatacg      3960
     aattcgtaca taaacccggt aaattaaata ccaacgcgga cgcgctttcg agaaatccgg      4020
     ttaatgaagc ggagctgaat gaatcagacg ctttcacgtt atcttcaagt tcggaaaccg      4080
     agcgggaaaa ggaagaaccg tcttccgtgg ttaaattaat ccatcgattt ttaacgacta      4140
     ccgcgcaagt taaggaagcg cgacgaaggt caggttacgc gaacttattg ccgatatcgg      4200
     agtctccgcg gtcctctgac tctgaaacac cggcagtcgt cgttcgtagg gggcgaggta      4260
     ggcctcccgg cacgaaaaat aaacctaaac caacacctat tatagacact gaaggaatag      4320
     ctactcgtac acgtttaagg tccgcaaaac aatcagtttc gttaacttca cctgacattc      4380
     ccaaccctac tatcatagta acgtccaata ctccgacaga cactgacgtt acctctgata      4440
     atccgacaga catagacacc gactctgacg cgggaacacc gatctatttg cgtaggcgta      4500
     gcgtgttgcc gggcctgggg ctcagttcgc gtcagcgaat tacgggagtg tcccggactc      4560
     cagcacccga cagcgctacc tccgattcag atcaggattg tttcaaaaca ccgatcacaa      4620
     gtgaatcgaa aacgcacttc gaagaaccac cgaacgaaaa cgcggcagat aaagaccaag      4680
     tcgaagcaga cgctgaccat ttataccatc ctgacggatt atcgcattta accaaaaccc      4740
     tatccgacac agtaatccat agaccgctac aacaatcaca attaccagca aacctaccat      4800
     caactccacc aatagctcta tccacaccta acagaaaccg cctctccgaa aaggtttcgg      4860
     aacagcaaga gaatcaaata ataatacctg cagatttacc gatcgaggga tccactagcg      4920
     attcactggt agacctcgat ttgccgtatc tagacgcgcc ggaaaataga gcaatcgtag      4980
     gcgcgaaaac agtacatttt gcgtgtgaaa acttaacgta ccatcgtgac aactatgttc      5040
     acttcataag taaagattta ttgcttacac caatcagtaa attgcttgtc gaaataggaa      5100
     taattgattt tgagaccttt aaaggcccag agttgaaagt tggaacgatt tttgttacaa      5160
     aacgcggtag caaccacgtg ttttcaatcg tggttaaaga taacatcaac gacgatttac      5220
     cattagctag actagaatca attttgagca aattaaaaca aaagatgtct gaattaaaaa      5280
     ttgagtcatt cagaatctct aggttcgatg atttgaccga gaatttgcct caggatgtat      5340
     tatcaagcac cctgcggaaa atcttcggcc aatcaggtat caagattacg ttatgctatg      5400
     gtagagtcca agtaccaccc acggagattc gttcggatat catcgcggaa ttacataata      5460
     gtttagtggg tggacataaa ggggtaacaa agacgtacca acgaattcga gaacgtttct      5520
     actggccaaa catgcgacaa cagattgaag cttacataca gaattgtcac agttgtcaga      5580
     cgcgaaaaat atcgagaaaa cgtacgcgcg aaccgatgat cataacagat acaccggttg      5640
     aaccattcgc gaaagtatcg ttagacacag tgggtccatt cccgagaaca cctgacggga      5700
     ataaacatat actgactgtt caagataatt tgacgaaatt ctgcatagct gttccggtac      5760
     ctaatatccg agccgaaaca atagcccacg cgctagtgac aaaccttatc ctgcaattcg      5820
     gtgccccaaa ggtcatatta tctgaccgag gcacgagttt cctaaaccga gtcatatccg      5880
     ctgtagctaa gatgtttggt atacatcacc ttaccacgtc tggctacaga cctcaaacaa      5940
     acggttcgtt agagcgtagc cacgcagtac tggtggacta cattactcat tatttaggag      6000
     atttcgatga ctgggataga ttagtgccgt ttgcaatgtt cgcttataat acctcggtac      6060
     acgaaggtac caagttcaca ccgtttgaac tagtgtatgg aaaacgcgcg cgcgcaccta      6120
     ccgcgtttcc tgcgagcgac gacctgccta cctacgaagg atatgttcgc gatttaaacg      6180
     atcgcctgca cgagatgcaa ggcatcgcgg gacagaatct cgtaaaagct aaaaagcgtt      6240
     caaaaaccta ttacgacgct acagctcgtc cgtttaaggg tcgcgtgggg gacgtggcat      6300
     atgtcctggt tgagccgcgc aagggcaagt tcggcaaaag ataccatgga ccgtatgaaa      6360
     taattgaatt tactcctaat aaaaacgtcg tgttgaagga tgaaattgga aacgtcttca      6420
     gcaaacacgt tgacaaacta aagttctgga aacctagaaa tgtctgatca ctgcacagtt      6480
     ggccgtctac tcgtaaaatt cgaattgatc gatgaagggg caacatagct ccatggaggg      6540
     ccggctggcg cagtgcattc tatctgaaat aaacaatttt ttcaggagca gtccgagcgt      6600
     taacatccgt attcaaatca aatctagcgt gcgataactt gatttttaca ctgtatttaa      6660
     acaatctagg aatcaaccat tcgtcatggc atcgacgtcg tcgagcacct accgtgacac      6720
     caggcaggag aatcgggggc gacgagtttt cgttacccgc ataccgccct ttgcgcagaa      6780
     agggagcctg atgactctgt tccgcgcctt cagccctgac caggccgtgg tcgtacggaa      6840
     gcctaccggg acttacgggt tcatcacctt cccaacagcg gagctggcct tgagagcggt      6900
     ccaatgggtg gaagcgacca agccaatctt ccacaagcgc aagattaaag cagctatcgc      6960
     cgattcctgg aatgaggcgg ctttgttgag accacgcgga cgccccgacc cgtttccggg      7020
     gtgggagccc cgcacgtcac cgccactgcc agaagaagtc ttagcgcgga tcgccagatt      7080
     cctaaacttc gccgaccggg ccaggatgga gggagtatgc cgagcctgga gggctggagc      7140
     cctggcatcc tacgcatcgg agcgggtcct ttcaaccacg gaccaacgct ggccgcaagg      7200
     atgggcgcac ccgagcgtgg ataccgaagg tcttcgttgg gcgatcatgc ggttggggcc      7260
     ctacgtaagc gagctgcgcc tcgacgatcg ttgggtcgcc gaaaggctgc ggccgcaggt      7320
     gttggggatc gcggcgcgcg gttgtcctag gctgaccacg atagatttga ccggagcgac      7380
     ggtacgtccg tcggcgctgc gcgatctagc gtcgaacgcg gaacgcctac aaagatttta      7440
     tttgggtagg accatcggaa atgttgaacc ggaattgtcg ggggtgttcg tggctgcgcc      7500
     gcgtctcgcg agcttcgtgg ccacaggttc cgggttcgcg ggggcggcgt tgtcgcggat      7560
     ggccccgaca cttcaggagg taaggcttcg ggattgcgcg tcgctgtcct cagcatcggt      7620
     ggccgcgtgt ctggcggccc agcgctcgct ctcgtcggtt gagcttgctc agtgtcgtgc      7680
     cctgtcctct gccgaaccat tggacgccct catgaataac gaggatctcc atcgctcagt      7740
     acaggaattt gtggtaatcg atatcgactt cgccccgatt atcgacggag cagaggaaga      7800
     agaaatcccg gacgccgctg acgtgccgga tccggtcttc atcgagctcc agctagggcc      7860
     agtggaggca gcgcgctcat tgccggaact cttccggcaa cttacgatct tgagagtgtt      7920
     gttctgtgga tgggtagacg tcactttcat cagaagtgtg ggagaacact tacaccagtt      7980
     attggagttg gatatttcgg gatgctccaa tgtgaggggg caattcgccc tagaatcctt      8040
     ggggaacctc ccgagattgg agaagatcac gatcaataac cttcacccca ccgtatcggc      8100
     gccagcttta gccacgatag ccaccctgga ggaagttaga gcgcgtgata gccaaggtat      8160
     caccgatgaa gacacgacgg ctatcgtacg tggctgttca cgcctagtcg ccctggacgt      8220
     ggaaggatgc ttgggggtga caaaccagac cgtcatcgag tccactgaaa tcgttaggag      8280
     gcagggcagg gcaacggtgc tgagcttgtc ggtcggcggg acgagtgtgg atcgttgggt      8340
     gcgcgttcgc cccagtttgg tgctccgggt attatatgat cgggtgtacc aaccgatcct      8400
     tcgtgatttt taggctaagc atcaccgagg gcggcgatgg ttttaagggg ggaggatt        8458
//
ID   Gypsy-3_OsLi-LTR repbase;    DNA;    INV; 2787 BP.
XX
AC   .
XX
DT   23-NOV-2020 (Rel. 26.04, Created)
DT   23-NOV-2020 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-2787
RA   Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2023-2023 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2787 BP; 788 A; 615 C; 545 G; 839 T; 0 other;
     tgttacgtcc cggcggaaaa tttgaaattt atccgccttg cgtcccttat caagcccttt        60
     tgggttacga ggatttctca tgtgaggggc gtatgggcgg gtgtttcggt tttccgccaa       120
     ccttttcatt cctcctcgac cttgtacatt cttgtcaagc ctttcgaggt tacgagaatt       180
     tctcatgcag ggatgtacag ggaagagttt gagtttaatt cctttctatt tttgacttcc       240
     tctatcgctt tctcttcttt acctgctcta ccctggaatc gtgtatctcg tcaagctctt       300
     tcgagggtta cgagaattcc tcatgcgagg tacacgcgga aaggtcgttt ctattttcta       360
     cttttcaata gtttacgtga ccctccttga aactatcgtc gccagccatt gtaataagaa       420
     gctaatacgc acaaaaactc gggttagctc gagtgagaga gagagagaga gccgtagcaa       480
     taacaccagc gctacgcagt tagccagtgc ttcgcatttc gggaatttcc cttggtaact       540
     gcgtagaaac gggaaaatcg taataactct tttgttagga acctctttct cactctgttg       600
     cacaaagcgt cagccggtcc aacaaggatc atcgctacct gattgtaata atagtatgag       660
     agagtggatg gatgaaacaa atttaaacaa tgaaagtaag aattgagaac ccttacgaaa       720
     gcgaacgtcg cgaacgttcg accgccgttc gaaaatcaag ggtcgttcga agcaataaac       780
     gctattgtat cggaattcta agaactgcct agcgataacg gcaaattttg aacaaaggaa       840
     cgttctcgaa ggaacgttcg ccagatctag aattgtttaa aaatttataa aatgcgaaat       900
     accgaatata tcgaggcgat agttttaatg cgcgatagat tgcataatac gccacggcgt       960
     tacaaccacc gtaagcgcat catccgctgt taaacatata aaatcatact gttttattgc      1020
     aaatcgggat gaataatttc aatcacgata tacgaacgac ggtttcctat caaacccgat      1080
     atttcaattt taatttatat ttcaatatca aatctcaaat tgcacaccaa ttaaactaat      1140
     agttacatct cgaataaatg ccgttaatta attatatgta taacgagaaa tactgcgtag      1200
     tttctgaaaa ccgttgaaac tatcatggcg acgaatgaga aaaggaagga acaccaaaga      1260
     aaggggatga aagatcttcg tctagctcgc gcgtcttagc caatcaccgg gcacgcgaca      1320
     cttccgaaaa cgggctacga ttcgccaaac cgtcccctcc aaggacgatg ttcgcgcgac      1380
     gggcccttcg gccgtcgatc gcgcacgaaa tttgtcactc ttgatcgatc aatcgtaagt      1440
     acgtgatcgg gagcccgtgt gtccgagaga cagagttatt cggaaattcg cgatattttc      1500
     tctgcggtaa agtcctccgc gtagcgaggc agagtgccgt gcgagttaaa ataatcggta      1560
     ttctgaataa ggactcacag acgcgcacgt aaaatcttcc ttctacctaa attttctatc      1620
     ttttctttcc gattttaaat cgtttgctcg cgtagttctt cgtactaact tcaccccgcg      1680
     taattatatt cgttgtaatc gtaattaatc gtaaatcgtt attcgtttgt ctctcgtcga      1740
     cgtactcgtc cgtaataatc cgtttctcgc cgcgacaagt gcagtgatcg acgatcttac      1800
     cgtttctttg gtgttccaga tcatcgagcg attacaccaa aactagcaag cgaatttacc      1860
     ttgtatttta ttgtacaccg taacggtaag tcgtttcagt tacatttttc gatcacgacg      1920
     tttattcaat tggcaaaacg ggcgatctgg tccagccctt caaggttacg agaattcctc      1980
     aggtcagatc gttccaccgt acgaggtatt gatatcatcc aatattaaat actattttcg      2040
     gttattacaa tttcgcaatt ccagtctctt tccatcatcc gaagggcacc ttagtccagc      2100
     tctttcgaga gttacgagaa tttctcaggc tggggtgtac cgcaggcgga aaccgccaat      2160
     cgtatagtta aattcggaga gcgaaattgt tataatcatt tttacgcgcc cggtaatata      2220
     ctcgtcggtt tcaaatgtga tatcagagtg ttttatattc atatatatat atatatacct      2280
     tgttaactaa tcttaagcat ctttacattt gttcacattt ttgcagaact ggtaattttc      2340
     aatttaacca aatttctaaa ttattgaact cataattttg gcaattatct gattttcatt      2400
     cacgattaaa ccagtttcat ttagttaaac agtttccttt tatttcgaac acacctcaca      2460
     cgtttcagtt aaaacacgcc taccaacata cccagattca aggagggtcc cgtacgggac      2520
     caagcgctga acgaacccaa cgaaaggcta ataattataa tcttttaata tcttatcaat      2580
     tttgtctttc gtcttttaat ttgtcgagag cgttaatacg ctcgagactg gtggcagcga      2640
     taccaaccat cgcgctaaaa tagggaagca ggaattaggg gttgaattcc aaccaattaa      2700
     ttgaaattta actacctaaa aatccacttc taattaatta ttctttcctt tttacgttgc      2760
     gcgccgtcgc tcgcgcgcaa cgtaaca                                          2787
//
ID   Gypsy-3_PBa-I repbase;    DNA;    INV; 4928 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PBa_;
KW   Gypsy-3_PBa-LTR; Gypsy-3_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4928
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 675-675 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [3493-3972] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..1081
FT                 /product="Gypsy-3_PBa-I_2p"
FT                 /translation="MAERQTEETGTGQEEAKGRRVISARKRACTRAEGPEA
FT                 SPNLEEILRLTLEELRSLREERARRETETSSMPGPQEEISQRPISGQSFPF
FT                 SNFSSDLKLKPDTYDGSVPLREYLTQFNLIARANNLGNAEKAVVLASCLRG
FT                 KARAILEGGTDFENSQFENLVARLELRFGENLSSQNYYYQFTNRKQRFGED
FT                 LAALGSDIERLSRLAYPECSPGVRDKIACSQFVVALSDVNVKQTLQLEGLT
FT                 SLRAAVERALAIKIIRENCLKERRNFDFKEVKDCSNYKSNPDLNGFKVESR
FT                 GTRGLNFKKKKNFKIQEKKECWQCGKQGHFRSECPSLSVSQQGK"
FT   CDS           1009..4362
FT                 /product="Gypsy-3_PBa-I_1p"
FT                 /translation="MLAVRKTRALPFRVSITFCFTAGKIGFVELSGAGSTN
FT                 GRNAPGVCRRFERGCEKSGNFVFQGSLNGRDCFFKLDTGSDVTLVSSKFIG
FT                 RKGKRFSAKEENLRYPTGERVPISFKMFAKIKLGRFNLELPIFVADIGEDC
FT                 ILGADFFSRIGMQTVIESFLRGGHREDFCRRIKQEDEAVPAELEEFFNNNS
FT                 RELEEDQRIVFATLLREFRDVFSEQAVAGKCEVLQHKIELMDSRPIKQAPR
FT                 RIPIHMRSEVEKIMEDMKEQGVIEESSSPWVSPAVLVKKKDGSLRFCIDFR
FT                 KLNAVTKKDSYPLPRVDDLLDQLSGNAWFSTLDLKSGYWQLKIRPEDREKT
FT                 AFSVGNGLWQFVAMPFGLCNAPATFERLMERVLRGLLSKICLVYLDDVIVF
FT                 GKTFEKMKENLREVLLRFRAAKLSVNPKKCDLFRRQVKYLGHVVSSAGIAT
FT                 DPEKTEAVTEWPVPQNKKQVRSFLGFCSYYRKFVKGFSSIAKPLFKLTENL
FT                 TKFEWTEQCQEAFLRLKQALTSAPLLSFPKGEGKMILDTDASGFGIGAVLS
FT                 QVQDGYERVIAYYSRVLNKPERNYCTTRRELLALVDSMKHFHHYLYGKSFS
FT                 IRTDHASLRWLMSFKDLEGQLARWMERLQQYDFDVAHRKGIIHGNADGLSR
FT                 RPCVEEKCRFCSKVEVQRGLFEDKVVARIVLREDSSEDWRRAQIEDQELAM
FT                 FLLAKENDLRPSWEEVSSKGLSAKIYWHQWHALEVQNGILHKRWEAPNLKN
FT                 SFLQLMVPRSKVKQILEEAHDTPSGGHFGINKTLEKIRKRFYWATCKKDVE
FT                 EWCRTCKICIAKRGAADKGKSPLQIFNSGAPFERIQMDILGPLPVSSSGNK
FT                 YLLVVVDCFTKWVEAFPLKNMRATTVAEIFVNQVVSRYGVPLELHTDQGRN
FT                 FESQLFQELMRILGIRKTRTTALHPQSDGQVERQHQTILQYLSKFVEENQK
FT                 DWDRWIPMFLLAYRTSKHEATGVTPSELFCGRDLTLPMDLLRGTPPSYGFS
FT                 ESAEEYVRNLRQKLDEIHQRVRERLESRSLKIKCRYDRKARHPVFEEGQKV
FT                 WLFNPHRKKGRSPKLQNDWEGPFEIIKKISDVVFCISRSGGRKSKVVHADR
FT                 LAPFREREEF"
XX
SQ   Sequence 4928 BP; 1371 A; 790 C; 1322 G; 1445 T; 0 other;
     attttggggg ctcgtccggg atcgaatttt tcgattcgtg tgtgtgtgtg tgtgtgtgtg        60
     tgtgtgagag ataatggcgg agcgacaaac ggaagagacg gggactggac aggaagaggc       120
     gaaaggtcgg agagtgatct ctgcgagaaa aagggcctgt actcgagcgg aagggccgga       180
     ggcgtctccg aacttggagg agattcttcg cttaacgctg gaggagcttc gctctctgag       240
     ggaggagcgc gctcgtcgag agacggaaac atcttcaatg cccggtccgc aggaagagat       300
     ttcgcaacgt ccgatatcag gccagtcatt tcctttttca aattttagtt ccgacttgaa       360
     acttaagccc gatacttatg acggtagtgt tccgttgcgc gaatatctta cgcagtttaa       420
     tttaattgcg cgggcgaata atttgggaaa cgcggagaag gctgtcgtat tagcgtcatg       480
     tctccgagga aaagcgcgtg cgattttgga agggggcacg gattttgaga actctcaatt       540
     tgaaaatttg gtcgcgcgtt tagagctacg ttttggagaa aatttatcct cgcaaaatta       600
     ttattatcaa tttacgaatc gaaaacagag attcggagaa gatttagctg cattaggctc       660
     ggatatcgag cgtttatctc gattagctta tcctgaatgt tctcccggag ttcgtgacaa       720
     aattgcttgt tctcaatttg tagttgcatt gtctgatgtg aacgttaaac agacattgca       780
     gctagaaggg ttaacatctt tgagggccgc ggtagaaaga gctttggcta ttaaaattat       840
     tagggagaat tgtttaaaag agcggagaaa ttttgatttt aaagaggtta aagattgctc       900
     gaattataag agcaatcctg atttaaacgg gttcaaagta gaatctcgtg gaacgagggg       960
     tttaaatttt aagaaaaaga agaattttaa aattcaagag aaaaaggaat gttggcagtg      1020
     cggaaaacaa gggcacttcc gttccgagtg tccatcactt tctgtttcac agcagggaaa      1080
     ataggttttg tcgaactttc aggggcgggc tcgacaaatg gaagaaatgc cccgggtgtt      1140
     tgtaggcgtt ttgagagagg gtgtgaaaaa tcaggaaatt ttgttttcca aggctctctt      1200
     aatgggagag actgtttttt taaattggat acgggctccg acgtgacctt ggtgagtagt      1260
     aaatttatag ggagaaaagg gaagcgtttt tcagcaaagg aagaaaattt gaggtatcct      1320
     acgggggaaa gggtcccgat cagttttaaa atgttcgcta agataaagtt agggagattt      1380
     aatttagagt taccgatttt cgttgccgat attggagagg attgtatttt gggcgcggat      1440
     ttcttttcac gaatagggat gcaaactgta atagaatctt ttctccgtgg aggtcatagg      1500
     gaagattttt gtcgtcggat taagcaagag gacgaagctg tgcccgcgga gttggaagaa      1560
     ttctttaata ataattcccg agagttggag gaagatcaga gaatagtttt cgctacattg      1620
     ttgcgagaat ttcgtgacgt gttttcggag caagctgttg caggaaagtg tgaagttctt      1680
     caacataaaa ttgaattaat ggattctcgt cctatcaaac aggctcctag gagaattcca      1740
     attcatatgc gttcagaagt tgaaaaaatt atggaagaca tgaaagaaca aggggtaatt      1800
     gaagaatctt caagcccttg ggtttctcca gcagttttgg taaagaagaa agatggatct      1860
     cttagatttt gcattgattt tcggaaattg aatgcggtta cgaaaaaaga ttcttatccg      1920
     ctaccaaggg ttgacgatct tcttgatcag ttatcgggaa atgcctggtt ttctactctg      1980
     gatttgaaga gtggttattg gcaactgaaa attcgtcccg aagataggga aaagactgct      2040
     ttttctgtgg ggaatggact ttggcaattt gttgcaatgc cttttggtct gtgtaatgcc      2100
     ccggctacct ttgaacgtct tatggaacgg gtgcttcggg gtttactttc gaaaatttgc      2160
     ctggtttatt tagatgatgt gatagtattt ggcaaaacct ttgagaaaat gaaagagaat      2220
     ttaagagagg ttcttctgag atttcgtgct gcgaaactta gtgttaaccc aaagaaatgt      2280
     gatttattta ggagacaagt aaaatatttg ggtcatgttg tttcttctgc cgggatcgct      2340
     acggatcctg agaagactga agcggtcact gagtggccag ttcctcagaa taagaaacag      2400
     gtccgaagtt ttcttggatt ttgctcttat tatcggaagt ttgttaaggg attttcttca      2460
     attgcgaagc ctctgtttaa gttaactgag aatttgacta aatttgaatg gactgagcaa      2520
     tgtcaagaag catttttgag gttaaaacag gcattaacgt ctgcacctct tctttccttt      2580
     ccgaaggggg aaggaaagat gattttggat acggatgctt caggttttgg aataggggcg      2640
     gtactttcac aagttcagga cggctatgag agggtcattg cttattatag tcgggttttg      2700
     aacaaacctg agcggaatta ttgcacaaca agaagagagt tattagcttt ggtagattcg      2760
     atgaaacatt ttcatcatta tttgtacgga aagagtttct ctattcgaac tgatcatgct      2820
     tctttgagat ggttgatgtc cttcaaagac ttggagggac aattggctcg ctggatggaa      2880
     aggttacaac aatacgattt tgatgttgct catcgaaagg ggattataca cggtaatgcc      2940
     gatggtcttt cgagacgccc ttgtgtagaa gaaaaatgta gattctgttc taaagtggaa      3000
     gttcagagag ggctttttga ggataaagta gttgctcgta ttgttttgcg tgaggattct      3060
     tctgaggatt ggcgaagggc tcaaatagag gatcaggaac tggcaatgtt tttacttgcc      3120
     aaagaaaatg atttgcgacc ttcttgggag gaagtttctt cgaaaggatt gtcagccaag      3180
     atttattggc atcaatggca tgccttggaa gtccaaaatg ggattttgca taagagatgg      3240
     gaggctccta atttgaaaaa cagttttctt cagttgatgg tcccgcgaag caaagtgaag      3300
     cagattttag aagaagctca tgatactcct tctggagggc atttcgggat caataaaacg      3360
     ctggaaaaga tccggaagcg tttttattgg gcaacctgta agaaggatgt tgaggaatgg      3420
     tgcagaacct gtaagatttg tattgcgaag aggggtgctg cagataaggg gaaatctcct      3480
     ttgcagatct ttaattcggg agctcctttt gagaggattc agatggatat tttaggcccg      3540
     ttacctgttt cttcttcagg caataagtat ctcctagttg ttgtagattg ttttactaaa      3600
     tgggtagagg cttttccttt gaaaaatatg agagctacta cggtagcaga aatttttgtt      3660
     aatcaggttg tttctagata tggggtcccg ttggaacttc atactgatca gggaaggaat      3720
     tttgaatcac agctctttca agaattgatg agaattttgg gaattaggaa aacgaggacg      3780
     accgctcttc atcctcagtc tgatggtcaa gttgaaagac aacatcagac aattttacag      3840
     tatttgtcaa agtttgttga agagaatcaa aaggattggg atcgttggat tcccatgttt      3900
     cttcttgcct ataggacctc taaacatgag gctacaggcg taactccttc agaattgttt      3960
     tgcggaagag atcttacctt gccgatggat ttgctaagag gtactcctcc cagttatggt      4020
     ttttccgagt cagcggagga gtacgttcgg aatttgcggc agaagctgga tgaaattcat      4080
     cagagagtaa gagagagatt agaatcaagg tctttgaaga tcaaatgccg ctatgatcga      4140
     aaggctaggc atcccgtttt tgaggaagga cagaaggttt ggttatttaa tcctcatcgt      4200
     aagaagggta ggtctcccaa actacagaac gattgggagg ggccttttga gataattaag      4260
     aaaattagtg atgtagtttt ctgtatttct cgttcaggtg gtcggaaaag caaggttgtg      4320
     catgccgaca ggttagctcc gtttagagaa agggaagaat tttaagtaga ggttttcggg      4380
     gcccggtttt ccaattttga cattactttt atttcttgtt aattgttttg agttactgtt      4440
     ttctgtttta tctttcttta agcttccttc cgtcgtgaga agcgtcgtgg ggagatcctc      4500
     gagcctgagc accaagcaag atcttcaagc tcgtgcttca aactgaaaag aagtctgcct      4560
     cgcccccggt tttccgagtc gtggtttttc cgggggacga tgggcgaatg ccgaggcagg      4620
     ggcttagtgt gtcttttaga aagacgtaag ggtccacgac gattaccccc actttgcccg      4680
     aagaatggaa gagagaagtg cgcaaagctc aagacgaaga gtcaagagtg aaacgcgcga      4740
     aaatttcaag aacaagattc ttctgaagag tagagaagac tgggattaga agtagcggcg      4800
     cccggtaacc tgaggcagca gcccagggta gggcaggaag tcgccaggag cccagaagtc      4860
     ttttccaaga ggaagttctt gaaagaggaa gaattgtcgg gacgacaatt ttatgaagag      4920
     gggggcag                                                               4928
//
ID   Gypsy-3_PBa-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PBa_;
KW   Gypsy-3_PBa-I; Gypsy-3_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-267
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 676-676 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 267 BP; 55 A; 66 C; 72 G; 74 T; 0 other;
     tgttgcggcc gtgcggtgtt ccgttcggcg ctgctgaaat taatcaatat caatcgataa        60
     gagtttgaat agaggatcgg cccttggcaa cgcgtcgttc tccgactgtt ttacagattt       120
     cacggccaga ttccgcggtg gccggacgcg tttctgttgt accgttggtt taataaagag       180
     cgagcttttc tttaaacagt gttcttcctt tccgaaagcg ctccgccgag tatcgcgatc       240
     tcgggaagta acgccgcgaa cgcgaca                                           267
//
ID   Gypsy-3_PPo-I repbase;    DNA;    INV; 1613 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1613
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2967-2967 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..678
FT                 /product="Gypsy-3_PPo-I_1p"
FT                 /translation="CSVLIYIIYLSIYLLHYIYLFIIYLLHSLIHHTFTTT
FT                 SITHAKHITYIFIHTNNIIIRTDRHAHSTFTLYNFNALQAERRPRRGRTTX
FT                 ELRNHAPRRAGRPTVASRCYTVLTPRSFALSPAILFTRFLCLLRFVLVFNL
FT                 CTCTLHRTSCVCAQINYSVGYAKLVTPNSEHVSRYCISYKMEDAQDARIPS
FT                 ARDNEIAELRQMIALLIETNRHTMLCPRLHLPTSTT"
FT   CDS           242..1234
FT                 /product="Gypsy-3_PPo-I_2p"
FT                 /note="retropepsin, reverse transcriptase
FT                 (partial)."
FT                 /translation="SKQIDIQCSAPDSTCRHRQHSRGHVASQHRRQQHRAK
FT                 IQKRQPQPAPAPAEPAICWYHAKYQDKAVKCIQPCTYKPATTTTMATDGCP
FT                 PTGRLFVTDRRSNTRFLVDTGSDVCVYPRAALRERRXKTNFVLSAANGSDI
FT                 ETYGFIDLCLDLDLRRNYNWRFTVADVTKPIIGVDFLSHYNLIVDCKNHRL
FT                 IDNTTTLSCIASHANFNVSSVKVVTGDTCFHKILQKFPEITRPSGTHFTPR
FT                 HNTVHHIRTTPGPPTSCTPRRLAPEKLKIAKEXFQVMMSNGTARPSQSSWS
FT                 SPLHLAPKKDSTWRPCGDYRKLNSRTIPDRYPVRHIHDF"
XX
SQ   Sequence 1613 BP; 440 A; 464 C; 308 G; 396 T; 5 other;
     tgtagtgtac ttatctacat tatttattta tctatctatt tattacacta catttattta        60
     tttatcattt atttattaca ttcactcatt catcacacat tcacaacaac atcaatcaca       120
     cacgcaaaac acatcacata tatattcata catacaaata atattataat acgtacagac       180
     agacacgcac actccacatt cacactatat aatttcaacg cgctacaggc agagcgccgc       240
     ccgcggcgcg gacgcacaac gtscgaactg cgaaatcatg cgccgcgccg cgccggccgg       300
     ccaacagtcg cctcgcgctg ctacactgtg ctgacacctc gctcgtttgc cctctcgccc       360
     gccattttgt ttacgcgttt tctttgttta cttcgttttg tgttagtttt taatttgtgt       420
     acgtgtacgt tgcatcgtac gtcttgtgta tgtgcacaaa taaactactc agtgggttac       480
     gctaaattgg tgaccccgaa cagtgaacac gtaagtcgtt attgtatttc ttacaaaatg       540
     gaggacgcgc aagacgcgcg tataccatcg gcgcgcgaca acgagatcgc cgaattaagg       600
     caaatgattg cattattaat cgaaacaaat cgacatacaa tgctctgccc ccgactccac       660
     ctgccgacat cgacaacata gccggggaca cgtagcatca cagcaccgac gtcagcagca       720
     tcgcgctaaa atacagaagc gccaaccaca acctgctcca gcaccagccg agccagcaat       780
     ctgctggtac cacgccaaat atcaggacaa ggcagtgaag tgcatacagc cgtgcaccta       840
     caagcccgcc accaccacga cgatggcaac agacggttgc ccacctaccg gccgcctctt       900
     cgtgaccgac cgccgcagca acacccgctt cctggtggac accggaagcg acgtctgcgt       960
     ctaccctcga gcggcgcttc gcgagcgccg gmagaaaaca aactttgtgc tmagtgcggc      1020
     taacggtagt gacatcgaaa catacggctt tattgatttg tgcctagatc tagatttaag      1080
     gcgtaattat aactggcgtt ttacagtagc tgatgtaacc aaaccgatta ttggcgtaga      1140
     ctttcttagc cattataatt taattgttga ttgtaaaaac caccgattaa ttgacaatac      1200
     taccactttg tcttgtatcg catctcatgc taattttaat gtttcttctg taaaggttgt      1260
     aacaggcgac acttgttttc acaaaatttt acaaaaattc ccagaaatca cccgcccttc      1320
     tggcacacac tttacaccga gacacaacac agtacaccac atcaggacca ctccaggacc      1380
     tcctacatcg tgtactcccc gtaggctagc tcctgaaaag ctgaagatcg ccaaagaaca      1440
     ktttcaggtc atgatgagca acggtacggc acgtccatca cagagctcct ggtcatcacc      1500
     ccttcacctm gcgcccaaga aagacagcac ctggcgcccc tgtggtgact accgtaagct      1560
     caactcccgg acgatccctg accgttatcc cgtccgccac atccatgact ttt             1613
//
ID   Gypsy-3_RP-I repbase;    DNA;    INV; 4108 BP.
XX
AC   ACPB02031233;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_RP_;
KW   Gypsy-3_RP-LTR; Gypsy-3_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4108
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02031233; Positions   15721   11614.
XX
CC   Positions [3181-3648] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1639..3648
FT                 /product="Gypsy-3_RP-I_1p"
FT                 /translation="MVEQGICRPSKSQWASPLHVVDKKDGGVRPCGDYRQL
FT                 NARTVPDRYGVPNIMDFRNNLYSKTIFSRLDLVRAYYHIPIREDDIHKTAI
FT                 ITPFGLYEFTRMCFGLRNAAQTFQRFMDNIFRDLNFCFVLLDDILVASTSE
FT                 DEHRQHLEEVFRRLDSNGLTLNPSKCEFGKEEIDYLGYHITPKGIKPHVDK
FT                 VQAIMDYPLPKDVRALRRFLGMLNFYRPCIPKAALLQKPLNVYLLGSKKND
FT                 KTPVSWNEESIAAFERCKAGLQDAALLAHPKPEAELSLACDASNHGMGAVL
FT                 QQKDSGSWIPLGFFSKMFSEAQQKYSAYDRELLAIYTAVRHFRPVIEGRPL
FT                 IICTDHKPLIYAMYQKPSSASPIRIRWLTFISQFTTDIKHVPGEANQVADA
FT                 LSRVEEIHLTGDLDKLADLQRTDATITDLEKQPNLSLQWVNLPGCTKTVLC
FT                 ETSNGKYRIYLPESLRRDIFDSLHGCSHPGVRATRKLIGKKYFWPNINADV
FT                 SNWARCCIACQRSKVTRHTITKPAEFVQTGRFEQIHIDIIGPFPPSAGKVY
FT                 CVTIIDRFTRWPEVVPVENITAEVVALAFYRGWISRFGVPKILTTDQGRQF
FT                 ESELFQHLTSFLGTKKIRTTPYHPQSNGCVERWHRALKSALVAHLDTSNWT
FT                 ELLPTVLWAYVPQSGMIQILA"
XX
SQ   Sequence 4108 BP; 1312 A; 846 C; 862 G; 1088 T; 0 other;
     gtggtgaacc cgacgtgatt ttgtgatctc ataatttgga ctttttaaat ctaattaata        60
     taattcttaa attgttttta atctaatacc aaattagttt tcgttgtatt ttatgttatt       120
     tgttcataat aagttaaggt tatttctaag aattttttta ttgttaagga tattttgatt       180
     gtttcttttt gtttgtgttt gtgttctttt tgttagtttt tttttaaaaa aaaatcagct       240
     aatcatgaag gaagaagcaa aagaagaaat agttgctttg acctccagta ataagatacc       300
     tcccttttgg aaaccagacc cagaactatg gttctgtcag atggaggcag tgttttcgcg       360
     ttgtgggatc acaaatagtt taacaaaatt tcagactgtt attcctcaat ttgagtttga       420
     tgtgcttcaa caggtagcag atatagtcaa acacccaagt aatgcccctt acgaggattt       480
     aaaaactcga ttattaatac atacgccgaa tctgaacata aaaggattca acaatttatt       540
     agagggcaag caattaggag acgaaaaacc gtcacaactc ttgcgacaaa tgaagcaact       600
     ggcaggagac acggtagcaa cggatgttgt taaaactcta tggctccgtt ctctcccgaa       660
     taccacacag gcaatcctct tatctacggg acacactgag gtcgacaagt tagcgagtgt       720
     agcagacaaa atccatgaaa tcgaccgccc tgatagcgta tgtaccgttt ctacaaacag       780
     tggactggag cataaaatcg agaaactcac tgagcaaata gccgcactag ttgcagcaaa       840
     atcaacctgg gatcgaagtc gaagccccag cgctcatcgt tctcggagta aatctagata       900
     caaagcagag cccaataatc caaattggct ttgttactat cattaccgat tccgagacaa       960
     ggcaaaaaaa tgtcaacaac cctgtgcttg gctgaagaac acagaaaatg caagttctag      1020
     ctccaaccag ggaaacagct aagcgggccg gaagtggcgg tagctggcac cgctaattcc      1080
     catcgccgcc tttttttgag agaccaacgt actgggcaga catttctcat agacacaggt      1140
     gctgccatat ccgtgttgcc cccatctaca aaaggtaaat ttaaggctac agaatatacg      1200
     ttatacgcag caaatggaag tcccattaaa acttttggag aaaaagagtt aaaattggac      1260
     ttaggactac ggcgagactt caagtggaat tttgtgattg cagacatacc caaacctatt      1320
     attggtgccg acctgctgca tcacttcaat ctgttggtgg acctaaaagg taagcaactt      1380
     atagatcaag ttacaaagtt atcaacaaaa gggaaagttt caaacgagcc tcccactaca      1440
     atatctgcag taccagagag tcatcctttt gcagacctct tacgaaaata tccagatatc      1500
     accaggccta atactattaa ggaaaatgta cgacatgata cagtacacta catagaaacg      1560
     acaggaccac cagttaatgc aaaatccagg aggttacatc ctgaacgata cagagtggtt      1620
     aaagatgagt ttcgtagaat ggtggagcaa ggtatttgta gaccatctaa aagtcaatgg      1680
     gccagtccct tacatgttgt ggataaaaaa gatggaggcg tgagaccttg tggcgattac      1740
     cgccaattaa acgctcgtac ggtaccagac cgttacggag ttccaaacat aatggacttt      1800
     agaaataatt tatacagtaa aactattttt tcgagattag atctggtaag agcatattat      1860
     cacattccta ttagggaaga cgacattcat aaaacggcta tcataacgcc atttggcctt      1920
     tatgaattca ctaggatgtg ttttgggctg agaaatgccg cccaaacctt ccaaaggttt      1980
     atggacaata tattccgaga tttgaatttt tgttttgtac tactagatga cattctagta      2040
     gcatcgacaa gcgaagatga acacagacag cacttggaag aagtatttag acgtctcgac      2100
     agtaatggat tgacattaaa cccttccaaa tgtgaattcg gtaaagagga aatagattat      2160
     ttaggatacc acatcacccc aaaaggcatc aaacctcacg tagataaggt tcaggcaatt      2220
     atggattacc ccttgccaaa agatgtaagg gcacttcgcc gtttcttggg gatgttaaat      2280
     ttttataggc catgtatccc taaggctgca ttgcttcaaa aacctcttaa tgtctatctc      2340
     ctagggagca agaaaaatga caagacacct gtctcatgga acgaagagag catagctgca      2400
     tttgaacgat gtaaagctgg cctacaagat gctgcactgt tagcgcatcc gaaaccggaa      2460
     gccgagcttt cattggcctg tgatgcctct aatcacggta tgggagctgt gctacaacaa      2520
     aaagattccg gaagctggat accattagga tttttttcta aaatgtttag tgaagcgcag      2580
     cagaaatact cagcatacga tagagagcta ctggccatct atactgcagt acgacacttc      2640
     cgaccagtta tcgaaggtag gccgctaatt atttgtactg accacaagcc actaatttat      2700
     gcaatgtatc agaaaccctc ctcagcttcc ccaatcagga ttagatggct aacatttata      2760
     agtcagttca ctactgatat aaagcatgtt ccaggtgaag ccaatcaggt ggcagacgcc      2820
     ttatcacggg tagaagaaat acaccttaca ggcgatttgg ataagttagc cgatttgcaa      2880
     agaacagatg ctacaataac ggacctggaa aagcagccta atctcagttt acaatgggta      2940
     aacttgccag gttgcactaa gacagtactt tgtgaaacat caaatggtaa atataggata      3000
     tatctaccag aaagcttaag gagagatatt ttcgactctc ttcacggctg tagtcaccct      3060
     ggagtgcgtg ctacacggaa gttaattgga aaaaaatatt tctggccgaa cataaacgca      3120
     gacgtttcga attgggcaag atgttgcatc gcttgtcaaa gatcgaaagt tacacggcat      3180
     accattacaa aaccggcaga atttgttcaa acagggcgtt ttgagcaaat ccatattgac      3240
     atcattggac cctttccacc atcagctggt aaagtttatt gcgtaaccat aattgatcgt      3300
     tttacccgct ggcccgaagt ggtaccagtg gaaaatataa ccgcagaagt ggttgcttta      3360
     gcattttacc gaggatggat tagtagattt ggtgtaccca aaatactgac tacagaccaa      3420
     ggaagacaat ttgagagtga attgtttcaa cacctcacca gctttctagg tacaaaaaaa      3480
     ataagaacaa caccttatca tccgcagtca aacggatgtg tagaaaggtg gcatcgggcg      3540
     ctgaaatctg ctcttgtggc tcatttagat acaagcaatt ggacagaatt actacctacc      3600
     gtactatggg cttacgtacc acaatcaggg atgatacaga ttttagcgta gcagaagccg      3660
     tatatggaca aactctacgg ttgccaggag aatttttatc accaagttcc agtgctaatg      3720
     atttaattgg gacagtacaa aaattaaaag aggtgatgtc cgaccttcgc cctgcatcat      3780
     ttagaaaaag tcgcagacac atatttgtcc ataagactct cgacaagtgc actcacatgt      3840
     tcttgagaga ggacaaggtt agaaaaccac tgacaccgcc ttactctgga ccattccccg      3900
     tgctcagcag gacagacaag atttgcacac tacagctgcc acagcgacag atcactgtgt      3960
     cgctagaccg cgtcaagcct gcctttttgt tagtggatga gccgaattca ccagcactac      4020
     ttccgaccaa cgaaccatct gttagtagat atgggcgccg gataaagccg aatgtaagat      4080
     ttctggacgc agttgttggg gggagtac                                         4108
//
ID   Gypsy-3_RP-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   ACPB02031233;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_RP_;
KW   Gypsy-3_RP-I; Gypsy-3_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-211
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02031233; Positions   11613   11403.
XX
SQ   Sequence 211 BP; 67 A; 30 C; 41 G; 73 T; 0 other;
     tgtaacggag gggctcctcc aataacaact gcttatcgat ggtgaaaact attatatggg        60
     aaggttacaa gaaacatata cagagagaga gtcccgcctt gccaagaccg tgtgtttttt       120
     tattgcgtaa caattttatt aataaataat aagtgtattt tttgtaaata tatttcattt       180
     attgaacgtt acagtgtgtt tttgcgtaac a                                      211
//
ID   Gypsy-3_SI-I repbase;    DNA;    INV; 4783 BP.
XX
AC   AEAQ01004791;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SI_;
KW   Gypsy-3_SI-LTR; Gypsy-3_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4783
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01004791; Positions    1292    6074.
XX
CC   Positions [1710-2135] - Reverse transcriptase
CC   Positions [3315-3800] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(75..2324,2328..4217)
FT                 /product="Gypsy-3_SI-I_1p"
FT                 /translation="MGRHKSCHRDSKKKTSRGKRRHSSSSSSSSSSSSSDK
FT                 KRKRLERFERLERIVNSLDRRSSHGHGSCIHRGDELMIPPFDPAKDDMTIE
FT                 KWIQHVDELSIQYGWDDRAIMRLIPSRLKGHARQWYDTRPRLAVTWAETKN
FT                 ELIQQFRKSVPFSKLFRDAAMYETAPGQSLGDYCFTKLNKLRKLNIVIPDE
FT                 YIIDAVIGGIKDPNVARAVRSVQIDTASRLYAHMTALGDLPVKTEQRKAPF
FT                 TSSHGRDGKNRQPKQSRHSQSQTANDETATSANPTDNDENRKQTKCFNCGK
FT                 TGHFARKCCEPRAECEKCTRKGHITAMCPQGKDVNAVKSMESASNPYERTM
FT                 FVNGQRIRGLIDTGSSCTLIRTSIAERYDMTVSLVPSVVLRGFAGQVTTSD
FT                 RSTLCEIRIMNARAQVNAILVPDECLVYDVIVGRDFIGQEHIVMIKRGSAL
FT                 SLKQLPAPDNDPENIIDVNFLNAESEVNIRVGTIPEDSKQRCIDLIREYGD
FT                 CVASSMKDLGKTNAASMSLRCTTDVPVVYRPYRLPESEKRVLRSMIDELLV
FT                 YNIIRKSSSPYASPVVLVKKSNGEHRMCVDFRKLNAITVKDKYPMPLIDDR
FT                 MDKLGGNRYFTGLDLALGYYQVPMASDSIEKTAFVTPEGHYEFLRMPFGLT
FT                 NAPAVFQRLMDQVLGDLRNSMAFPYLDDIIIPSRTIEEGMSRLRQVLDAFR
FT                 KHHLTLRLEKCSFFKESIEYLGREISEQGVQPGRHKIEAVRSMEAPRSVKV
FT                 RQFLGLASYFRRFIANFATIVEPITRLTKKNEPWSWGKAQNEAFTTIKDRL
FT                 TTRPVLTIFDPSRSTELHTDASAIGVGAVLLEDCLQEVEGQMKVVAYFSKQ
FT                 TTADQRCYHSYELETMAVVLALRHFRVYVLGIPFKVVTDCNALRATFAKRD
FT                 LLPRIGRWWLEMQEYTFEVEYRAGSKMAHADALSRNPVPMALEVAQVDITE
FT                 GDWVLAAQLQDEQLVRIRTILLGGTPTPEIKHYFDEYLIKDGKVYRRLGGN
FT                 SKAWVVPRDARMQICRLCHDDVGHLGVEKTLERIQRNYWFAGMRRFVTKYV
FT                 GACLHCAYYKHSAGKKQCKLNIIEKVPVPFHTVHIDHVGPFETSRKGNKFL
FT                 LVIVDAFTKFVIVEAVKSQKTSYVVKALTNLMYLFGAPARIVSDRGTAFTS
FT                 QTFWTFCLTYGIKHVLNAVAAPRANGQCERYNKTITQALATTTAGLDSNEW
FT                 DSAVKQVQSALITLHNKSINATPTKALIGCEARSVTEARLLAEIQDVVHQL
FT                 DLQELSAGIKEHIDAKQLEQKERYDRSRRAAVRYTDGELVLVRITTDPATE
FT                 SSKKLHPKFKGPFRVRKVLPNDRYEVEDLREGGRRRRTVAAADNIKPWITV
FT                 QDTRADNDPVSDAAGDQ"
XX
SQ   Sequence 4783 BP; 1272 A; 1119 C; 1372 G; 1020 T; 0 other;
     tatcagaagt gggattgtcg cgtgcctaac accgctagga aattctacag ttgacgaaaa        60
     tcgaagcgtg gacgatggga cgtcacaagt cgtgccaccg cgattcgaaa aagaagacgt       120
     cgagagggaa aaggcgacat tcgtcttcct cgtcttcttc gtcgtcctcg tcgtcgtcgg       180
     acaagaaaag gaaaaggctc gagcgtttcg agagactcga gcggatagtg aacagtctgg       240
     atcgacgatc gtcgcacgga cacggttcgt gcatccatcg gggagatgag ctgatgattc       300
     ccccatttga cccggcaaag gacgacatga ccatcgagaa gtggatccag cacgtggacg       360
     agctgtccat acaatacggc tgggatgatc gcgccataat gagattgata ccaagcagac       420
     tgaaaggcca tgcccggcaa tggtacgaca cgcggcctcg gttagctgtc acgtgggcgg       480
     aaacaaagaa cgagttgata caacaatttc gtaagtccgt tccatttagc aagttattca       540
     gagacgccgc gatgtacgaa actgcaccgg gtcaatcgtt aggcgactat tgtttcacga       600
     aattaaataa gttgcgcaaa ctaaacatag tcataccgga cgaatacatt atcgacgccg       660
     tgatcggcgg gataaaagac ccgaatgttg caagggcggt acgttccgta caaatagata       720
     ccgcgagtag attatacgcg catatgacgg ctcttggcga tttgccggta aaaaccgaac       780
     aaaggaaggc accgtttaca tcgagccacg gacgcgacgg gaagaaccga cagccgaagc       840
     agtcacggca cagccaatcg cagaccgcga acgacgagac tgccacatcg gcaaatccga       900
     cggacaacga tgagaaccga aaacagacaa agtgctttaa ttgcggaaaa acgggtcatt       960
     tcgctaggaa atgctgcgag ccgcgagctg agtgtgaaaa gtgcacgcgc aaagggcata      1020
     ttacggccat gtgtccgcaa ggaaaagacg tgaacgcggt caaaagtatg gaatccgcat      1080
     cgaatccata tgagcgtacg atgtttgtca acggccaaag aatcagaggc ttaatcgata      1140
     ccggcagtag ttgcacttta atacgaacct cgattgcgga gaggtatgac atgacggtgt      1200
     cactcgtacc aagcgtggtg ttacgagggt ttgccggaca ggttacgaca agtgatcgat      1260
     cgaccctctg cgagattcga ataatgaacg cgcgagcgca agtgaacgca atccttgtac      1320
     cggacgaatg cttggtctac gatgttatcg ttggtcgcga tttcatcgga caggaacaca      1380
     ttgtgatgat taaacgtggt agcgcgttat cattgaagca actaccggcg cccgataatg      1440
     atcccgagaa catcatcgac gttaactttc taaatgcgga atcggaagtt aatatacgcg      1500
     tcgggacgat acccgaagat tctaaacagc gatgtatcga cttgattcgg gagtacggcg      1560
     actgtgttgc atcctcaatg aaagacttag ggaaaactaa cgctgcgtcg atgagtttgc      1620
     gctgtacaac cgacgtccct gtggtttatc gcccatatcg gctacccgaa tcggagaagc      1680
     gagtgcttag gagtatgata gacgagttgt tagtatacaa tattatccgt aagtctagtt      1740
     cgccatatgc aagtcccgtg gtgcttgtga aaaaaagtaa cggtgaacat cgtatgtgcg      1800
     tcgacttccg taagctcaat gcaatcacgg tcaaggacaa gtacccgatg ccgctgattg      1860
     acgatcggat ggataagctt ggcggaaatc ggtattttac cggacttgac ctagcgttgg      1920
     gatactatca ggtaccgatg gcatccgatt caatcgaaaa gacggctttc gtgacacccg      1980
     agggtcacta tgagttccta cgcatgccat ttggactgac gaacgcaccc gcggtcttcc      2040
     aacggttgat ggaccaggtg ttgggcgatc ttaggaactc aatggctttt ccgtatttag      2100
     atgacattat cataccatca agaacgatag aagaaggtat gagccggttg cgccaagtgc      2160
     tagatgcgtt ccgcaagcat cacttaactc taaggttgga aaagtgctca ttctttaaag      2220
     aatccattga gtacctaggc agagaaatta gcgagcaggg agtccaacca ggacgtcaca      2280
     aaatcgaagc tgtaaggagt atggaggctc cacggtccgt caaataagtg cgacagttcc      2340
     tgggattggc aagctacttc cgacgattca ttgcgaattt tgcaacgatc gtcgaaccaa      2400
     tcacgagact cactaagaag aatgagccgt ggtcgtgggg aaaggctcaa aacgaggcgt      2460
     ttaccaccat caaggacagg ctcacgactc gaccggtgct aaccatcttc gatccaagcc      2520
     ggtcgacgga attacatacc gacgcgagcg cgattggggt aggtgctgtt ctgttggagg      2580
     actgtctgca ggaagtcgag ggccagatga aagtagtggc gtactttagc aaacagacga      2640
     cggccgacca acggtgctac cattcctacg agctggagac gatggccgtt gtgctggcgc      2700
     tgcgacattt cagggtatat gtcctgggga tacccttcaa ggttgtgaca gattgcaacg      2760
     cgctgcgtgc aacgttcgca aaacgagact tgctaccccg cattggacga tggtggctgg      2820
     agatgcagga atataccttc gaggttgagt accgcgcagg gtctaaaatg gcgcatgcag      2880
     acgcgctcag ccggaaccct gttccaatgg cattggaggt cgcccaagtt gatatcaccg      2940
     aaggcgattg ggtcctcgca gcccaactgc aggatgagca actggtgcgg attcggacga      3000
     tcctgttggg cggaacgccg acgcccgaaa tcaaacacta cttcgatgag tacttaatta      3060
     aggacggtaa ggtttatcga cgtctaggtg gtaacagcaa agcctgggtg gtgccgcgag      3120
     acgcccggat gcagatttgc aggctgtgcc acgatgacgt tggtcacttg ggagtggaga      3180
     agacattgga gcgtatccag cgaaattatt ggttcgctgg gatgagacga ttcgtcacca      3240
     agtatgtggg tgcttgtttg cactgcgctt attataagca ctcagctggt aaaaagcagt      3300
     gcaagctaaa catcattgaa aaggtgccag tgccattcca cacggtgcac atcgaccacg      3360
     tagggccctt cgaaaccagc cggaaaggta acaaattctt actggtgatt gttgatgcgt      3420
     tcaccaaatt cgttatcgtc gaagcggtaa agagtcaaaa gacgtcctac gtcgtgaagg      3480
     ctctcacaaa tttgatgtac ctgttcggag ccccggccag gatcgtcagt gacaggggaa      3540
     ctgcgttcac gtcccagacg ttctggacgt tttgccttac ctacggcatc aagcatgtgt      3600
     tgaacgctgt cgctgcccct agagctaacg ggcaatgcga acgatacaac aagactatca      3660
     cgcaggcgtt ggccactacc acggcaggat tggattccaa cgagtgggac tcggctgtga      3720
     agcaggtgca gagtgcgtta attacgctgc acaataagag tattaacgct accccgacga      3780
     aggcgctcat tgggtgtgag gcgaggagcg taactgaagc gcgtttactg gcggagatcc      3840
     aagatgtggt gcatcagctg gatctgcagg agttgagtgc cggtatcaag gaacatatcg      3900
     acgcaaaaca actggagcag aaggaacgat atgaccggtc tcgccgtgct gcggtgagat      3960
     acaccgatgg cgagctggtg ctggtgcgga ttacgaccga tcccgccact gagagcagca      4020
     agaagctgca cccgaagttc aagggtcctt tccgggttcg aaaagtgctg cctaacgatc      4080
     ggtacgaggt cgaggatcta cgggagggag gtcgacggag acggacagtc gcggcggccg      4140
     acaacatcaa accgtggatc acagtccagg acactcgggc ggataacgac cctgtgtcgg      4200
     acgcggctgg tgaccagtag agccgaagga gcttacgggg gtcaactgtt gtaaaccagt      4260
     gacccgccat cccgtcctcg cggttgctgc cggaggaaat aatgccattc tcacggttgt      4320
     agccgggaga gagagtcagt tgtcatggga cgatgactcg ctgtgtcatt cttacggttg      4380
     tagccggcgg tcgattgttg taaaacaacg attcgctatt ccgttcctgc ggttgttgcc      4440
     gagggaatgg atgtcattct cacggttgta gccgggagaa aatcagttgc catgggacga      4500
     cgactcgctg tgctcttttt cgattgtagc caggggtcga ttgttgttaa acaacgactc      4560
     actatcccgc tcctgcggtt gttgccgagg gaaatggatg tcgttagtac ggttgtagcc      4620
     ggaaatcaga catcgcacga gaatgagcga aaaccgtcgt atggtcgcag ccattctttg      4680
     aaacttacag ggagcagagc caggggtgaa gccgcaatga caggaaggga ttggaaaact      4740
     atagacgtgc ctgaggacag gccagaactt caggacggcc gaa                        4783
//
ID   Gypsy-3_SI-LTR repbase;    DNA;    INV; 313 BP.
XX
AC   AEAQ01004791;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SI_;
KW   Gypsy-3_SI-I; Gypsy-3_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-313
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01004791; Positions     979    1291.
XX
SQ   Sequence 313 BP; 90 A; 77 C; 82 G; 64 T; 0 other;
     tgtaagaaat tctccgaccc gacaattcga attggcgcca aacgatgggc ccgagcaaag        60
     gaggcgcgca actattggac gagtaggagc caataggcgg cggacgcaga cccgtccgtc       120
     taaccaacgg aaagtaggtg cgtcggcgac gcatcgtcgg ctgtaacaac aacacgcgcg       180
     gacacgtgac gcaactctta ctcttgcgag aactttaagc gagtgtacac gtgttaagcg       240
     agtagagcga aataaagcag tttttactat aacaaccgca gtttagagtt tttcctcgag       300
     taattttcct aca                                                          313
//
ID   Gypsy-3_SiCu-I repbase;    DNA;    INV; 4211 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4211
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5032-5032 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..4129
FT                 /product="Gypsy-3_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSGXTVKVELTTDSDSESTKSSTTTASTASTSKPPPP
FT                 NPKPTKKKKKRMTPIVGTLPSFDPKQDDLEMWWATYENFLVANDLDVTKCE
FT                 VRCVGILLSSIGLETYTVLNTLLSPDAPSSKSLADLKKALLGHYKPAPKAV
FT                 AERFRFTGRKQNAGESVHEFEAALRKLAIHCKFGGDLEIRVRDQFIFGLQS
FT                 EAAQRQLFTKDDNIALKDVVSLASAQEAAEASTALVRGKTQQHDSSDQVHK
FT                 VYSQKHSNNNKQRSKKNWGKNKQQGNNKDSHHQQKSDQHTASSGGNNSPCK
FT                 GCGKTGHSRSKCRYLDAQCHSCGKTGHISSVCRSQKGSSNHHLSLDSVSDM
FT                 KMVRSSTKRLITLDVIINGQHHTMELDTGCETSVISEDFYRSQLDARPPLT
FT                 KSHHVFRTYTKETFTPVGDLACTIEHNGQVFSTTVPVSRGSSLFGKDLLSV
FT                 FQINWKNVESQCHHVVDHTTELDSLLKEYDDIFQSPRTDDRIKGYTARVIL
FT                 KEDATPRFLKARPIPYALRDKVDKELSMMETTGVITKVETSEWASPLVVVP
FT                 KADGRVRITGDFKNTVNAQLCVTQYPLAIPDDIFASLAGCTTFSKLDGSNA
FT                 YHQLQLDEASKRFLVINTHRGLFRYNVLPQGIASSPAIFQAFMDEMLKDIP
FT                 RTGGFIDDAISGGTDTTSHLRQLRTLFERCRSSNYKLSKEKCEFVQPSIEF
FT                 LGHVISGEGIQTSNRKVQAVQQIPAPQNVTEVKAFLGLVNFYGKFLNGLSS
FT                 ICEPLYHLTKKDVDFLWSSKCQQAFDQVKKQLSTAPTLTYFDPNKPIGLSC
FT                 DASPVGLGVILFQREANGVERPIAFASQLLSSTEKRYSQIEKEGLAIIYGV
FT                 KKFYKYLCGRHFTLVTDHKPLLTIFGPKSQLPPLVATRLHHWSLFLSQFTY
FT                 DVKYRKSEDHGNADALSRLPPPQSPRQATPYHESCVNYVAEQQLEVLPVTA
FT                 AQIRKATSRDPILSQVLQLVLYGWPPKLREDASSLKPFFSRRLELTVNQGV
FT                 LMWGIRVIIPAPLQQRLLLQLHEAHLGIVRMKALARQHVYWPGIDKDIEAL
FT                 CQSCVTCQQSAASPPSSPLHPWMFPEKPWQRLHMDLAGPYLNNMWLIVTDA
FT                 HTKWPEVFLMNSNTTTSAVLQRLVELFARFGIPEHLVTDNGRQFTSSDFEQ
FT                 FCKDNGIKHILSSPYHPRTNGEAERFVRTFKEAMKCSDLPAPLRLQRFLLA
FT                 YRTTPHATTGVAPAELLQNRPLRTLFDLLHPNVSTTTRKSQASQEESYNSK
FT                 AKFREFHLQDAVWVNTHLKGEEKWSLGTIIGIIGPLTFNVKVGDRILKRHS
FT                 DQIRKAPKPAAHVSPSSDLSEESPPPSSSPPAAASP"
XX
SQ   Sequence 4211 BP; 1116 A; 1246 C; 928 G; 916 T; 5 other;
     ttggcgacga gtgatgtggc taaactaawa gtgtttcatc gcacccmagt cgcagaaaaa        60
     ctgaagaaaa aataagattt tctccatgag tggtkccacg gtcaaagttg aattgaccac       120
     tgactccgac tcagaatcca ccaaatcctc caccactacc gcctccacag catcaacatc       180
     aaaaccaccg cctccaaatc ctaaaccaac aaagaagaag aagaagagga tgactccgat       240
     cgtaggaact ctgccctcgt tcgatcctaa acaggatgat ttggaaatgt ggtgggccac       300
     gtacgaaaat ttcctggtgg cmaacgacct cgatgtcacc aagtgtgaag tgcggtgtgt       360
     ggggattctc ctgtcatcca tcgggctgga aacttacacc gtactcaaca ccctgctctc       420
     cccagacgcc ccatcctcca agagtctcgc tgacttgaag aaagctcttc tggggcatta       480
     caagcccgct cccaaggcag tcgctgagcg attcaggttt acggggagga agcagaatgc       540
     tggagaatcc gttcacgagt ttgaggcagc actccgcaaa ctcgccatcc actgcaaatt       600
     tggaggtgac ctggaaatcc gtgtgcgaga ccagttcatt tttggtctac aaagtgaagc       660
     agctcaacgg cagctcttca cwaaagacga caacatcgcc ttgaaggatg tagtctccct       720
     cgcctcagct caggaagcag cagaagcctc cacagctctc gttcggggca aaacgcaaca       780
     acacgactcc agtgaccagg tacacaaggt gtactctcaa aagcacagca acaacaataa       840
     gcagcgatca aagaagaatt gggggaaaaa caaacagcaa gggaataaca aggattccca       900
     tcatcagcag aaatccgatc agcacaccgc atcatctggt ggaaacaatt caccatgtaa       960
     ggggtgcgga aaaactgggc actcccgcag caagtgccgg tatttggacg cacagtgtca      1020
     ttcgtgtggg aaaactgggc acatctcgtc cgtctgcagg tcccagaaag gcagctccaa      1080
     tcatcacctc agtctggact cggtttcaga catgaagatg gtccgctcca gcaccaaacg      1140
     cctaatcacc ttggatgtga tcatcaacgg gcagcaccac acaatggagt tggacaccgg      1200
     atgtgaaacg agcgtcatat cagaagattt ttatagaagt caacttgacg cccgcccacc      1260
     tctcaccaaa tcgcatcacg tttttcgtac ttatacgaaa gaaacgttta ccccagttgg      1320
     agatcttgcc tgcacaatag aacacaacgg tcaagtgttc tccacaacag ttcctgttag      1380
     ccgcggctct tctctcttcg ggaaggacct cctcagtgtt ttccaaatta actggaaaaa      1440
     tgtcgagtcc cagtgtcacc acgtggtcga tcataccact gaactggact ccctcctaaa      1500
     agaatatgac gacattttcc agtcaccaag aacagacgac cgcattaagg gttacacagc      1560
     ccgtgtaatc ctgaaggaag acgccacccc acggttccta aaagctcgtc ccatccccta      1620
     tgctctccgc gacaaagtag acaaggagtt gagcatgatg gagacaaccg gcgtcatcac      1680
     caaggtagag accagtgaat gggcttctcc acttgtcgtc gtcccaaagg cagatggccg      1740
     ggtacgcatc accggtgatt tcaaaaatac ggtgaatgcc caactttgtg tgactcagta      1800
     ccctctcgcc atccctgatg acatcttcgc ctctttggct ggatgcacca ctttcagcaa      1860
     actggatggc tccaacgcct atcaccagct ccagctcgac gaggcatcca aacgtttcct      1920
     ggtcatcaat actcacaggg gactcttccg ttataatgtc ctccctcagg gcatcgcatc      1980
     ctcgcccgcc atcttccaag catttatgga tgaaatgctg aaggacatcc cccggactgg      2040
     tggttttatt gatgacgcca tctccggtgg taccgacacc accagccacc tccgtcaact      2100
     ccgtactctt tttgaacgct gcaggagcag caactacaaa ttatccaaag aaaagtgtga      2160
     atttgtgcag cccagtatcg agttcctggg ccacgtcatc tccggcgagg gtatccagac      2220
     cagcaaccgc aaagttcagg cagtgcagca gattccagca ccccaaaatg tcacggaagt      2280
     caaggcattt ttggggttgg tcaacttcta cgggaagttt ttgaatggac tttcgtccat      2340
     ctgtgagccg ctgtaccacc ttaccaagaa ggatgtggat ttcctgtgga gctcaaagtg      2400
     ccagcaggcg ttcgatcaag tgaagaagca gctgagcacc gcccccaccc tcacctactt      2460
     tgatcccaac aaaccaattg gcttatcgtg cgatgcatct ccagtgggtc tcggagtaat      2520
     cttgttccag cgtgaagcca acggagtcga acgccccatt gcattcgcct ctcagctcct      2580
     ctccagcaca gaaaagcgct actcccaaat agagaaggaa ggactggcca tcatctacgg      2640
     agtcaaaaag ttctacaaat atctttgtgg ccggcatttc accttggtta ccgaccacaa      2700
     accgctactc accatattcg ggccaaagtc tcaacttccc cctctcgtgg cgacccggct      2760
     ccaccactgg agtctctttc tctcccagtt tacctacgac gtcaaatatc gtaagtcaga      2820
     ggaccatggc aacgctgacg ctctgtcccg cctccctcct cctcaatcac cacgacaagc      2880
     aactccttat cacgaatctt gcgtgaatta cgtggcagaa caacagttag aggttctgcc      2940
     agtaaccgcc gctcaaatcc ggaaggccac ctcaagggac ccgatcctgt ctcaagtcct      3000
     gcaactcgtg ctctatggct ggccacccaa gctccgagaa gacgcttctt ccctgaagcc      3060
     gtttttctct cgacgtttgg agctaacggt caatcaaggc gtgctcatgt gggggattcg      3120
     agtaatcatc cccgctccat tgcagcagcg cctcctcctc cagctccatg aagctcacct      3180
     tggcatcgtc cggatgaagg ctctcgctcg tcaacatgtt tactggccag gaatcgacaa      3240
     ggacatcgaa gccctttgtc agtcctgtgt cacctgccag cagtccgcag ccagcccacc      3300
     aagttcacca cttcatccct ggatgtttcc cgagaagccg tggcaacgcc tccacatgga      3360
     cctggcggga ccatacctca ataatatgtg gctcatcgtg acggacgccc acaccaaatg      3420
     gccggaagtg ttcctgatga acagcaacac gaccacatca gcagttctcc aaagacttgt      3480
     tgagctcttt gcgcgttttg gcatccccga gcatctcgtc actgacaatg gtcgtcagtt      3540
     cacctccagc gactttgagc agttttgtaa ggacaacgga atcaaacata ttctgtcctc      3600
     accgtaccac ccccgcacca atggagaagc cgaaagattc gtccgaacat tcaaagaagc      3660
     tatgaagtgt tcggatctac ctgctccact acgcctacag cgtttcctgt tggcctaccg      3720
     tacgactcct catgccacca ccggcgtagc tccagctgaa ctcctccaaa ataggccact      3780
     tcgtactcta ttcgacctgc tgcacccaaa cgtctccacc accaccagaa aaagtcaagc      3840
     aagccaagaa gaatcctata acagcaaggc gaaattccgc gagttccacc tccaagacgc      3900
     tgtttgggta aacacccacc tgaaagggga ggaaaaatgg agcctcggta ccatcatcgg      3960
     catcattggc cctttaacct tcaacgtgaa ggtgggagac cgcattctga aacgccattc      4020
     cgatcagata aggaaggcgc cgaaaccagc agcacacgtg tcaccttcaa gtgacctttc      4080
     tgaagaatca ccgcctcctt cctcatcacc accagcagca gcttcacctt gagccgttta      4140
     cttgctggat ccaacctcaa ttatcaatca gtagtttttt ctgattatgt ttcattgtag      4200
     ggaagaggaa a                                                           4211
//
ID   Gypsy-3_SiCu-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   06-DEC-2019 (Rel. 26.09, Created)
DT   06-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-317
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5081-5081 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 317 BP; 83 A; 87 C; 47 G; 99 T; 1 other;
     tgtagagtat tgggcataat ctcaattatg cccaattatg cwaatgttta gatttatgga        60
     gactcgcgtc tcctctggcg gacgtgacta ccaagtcagt cacacttaac cttggagagc       120
     aattaagctc tctgctctct ctaaatttac cttactctgg ctgtccagcc aactctgtat       180
     gcattctgat tttgtccttc ttagaataaa gatattcctc cagaacacca ctctctcaca       240
     tcacacctca cttattcatc tctgatgctc atgcaccctt agcatatcgc atctcaaaga       300
     gatcctcata cactaca                                                      317
//
ID   Gypsy-3_SiOr-I repbase;    DNA;    INV; 9986 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-9986
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 340-340 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..2223
FT                 /product="Gypsy-3_SiOr-I_1p"
FT                 /translation="MSDDKRVTRSQKNKEAVESTPPYQRLSEIENNFNPTH
FT                 RSTSINPFQPRASLSRSPERTATPDTNKLKFSLVLPKNCQEEAIPSSIIVT
FT                 DNSEIINLNSIPVTENNTCKQQTQIVNTPLEKPRTLRLNKTENMANANNTT
FT                 LQNALAEQKNPATPKFLSPPNFEPSLDSPISFIKKYDRIANCNGWSDVYKI
FT                 TYLGNYLQNSANFWYTEYIVDDTNNNNDWEKIKKDFIKEFSGEQPMRKLKF
FT                 RLNTRKQNDNEDIKKYYFELRALAQEIDPNMAFETFRDHFENGLHSSYYET
FT                 YYLMSNANMTYDTLKTLVLKLSEIRERALVHQMTTQTSLLSITENSNRQTR
FT                 TTYQDRNNYSRNGRRNTQSNFGTYSRGTYNHRNSRPPNRFSNNFETNNNYG
FT                 ARSERQNYRGETQTIQNNTRFSPGQRGRGRNFSRGIPNTRCRDGRPRCTSC
FT                 NRPGHYSCENENNRSQRRVSFSRTPSPNGGGRLN"
FT   CDS           2190..5801
FT                 /product="Gypsy-3_SiOr-I_2p"
FT                 /translation="NTIPKRRRTAELDCHNKVVLYTGGSEHEILIIKGHVN
FT                 NNYNVDIILDTGSSKCVISKHLVNKIKPINSQVNLVAAGGYRISPLGTSDV
FT                 QLKLGELSGYVSALVVENLSRPLILGTDFLSKNKAKINYEKETVTLISKNT
FT                 EFILDFNRKQNHKDNFQSCSNLELLENLELLETDANEKQECKLSVKEDYVL
FT                 KPNVEISVKIEAVNKILNTEDLNKLYFTEKDEFLRKKGIICLTSPYYVGNN
FT                 LLVDLVTRKSNTIKIYKGTTLGFLKQPCNYNILDLPLLQIEEEKDEGEIVT
FT                 MADHKIEHIKNKKIKDELHGLLEEFNDVFSKSPKYMGRTELVEHSIDVGDA
FT                 KPIKRKAYRVSQKEREIIDDQIKEMAKYDIIRPSNSPWSSPVVLVKKKSGE
FT                 TRFCVDYRRLNEVTKKSTYPIPNIDDILTYMGKARYFSSLDMFSGFWQVKI
FT                 EEESKPLTAFQAQGHGLWEFNYMSFGLCNAPATFQQLADKVFRDLKWKEIL
FT                 IYLDDIIIFSETMEEHLNKLRKVFTRLRNAGLTLKPKKCEYLKEEINLLGY
FT                 NISSNGILPDENKLVAIKNFPEPKSVKDVQSFIGLCNYYRKFIENFSKIAH
FT                 PLHKVTKKETGFVWEDEQINAFNTLKEKLISPPVLSHYQPDKNCELRVDAS
FT                 RIGIGAVLLQEDSQKKLHPVAYASRSLSNAEKNYTITELEGLAVIWALTYL
FT                 RHLIYGKPVKIVTDHHALCWLKSLKDPTGRLARWSIKLSEFEYNIVHKSGV
FT                 SHRDADCMSRHPVLVPQENDETNDVPTFLIEATDISSAQRQDSKVNELITG
FT                 ILNPENASIGIRRRAKNFRLDDGVLYKINTSHQGRENLLVIPKQLVGEVIY
FT                 SNHSEPLSGHLGTAKTLHKIRSRYYWDGLQKDVERFIKGCPDCQARKGQQN
FT                 RKPIGLLQPIPVGIPFEKVGIDILGPFRRSSNGKTVIVVATDYATRWAETE
FT                 ALPSGKAGPVAKFILEKIITRHGAPKHLLSDRGKVFQSDLVRELLKRMGTT
FT                 SQFTTAYHPSTNGLTERLNKTIADMISMYTNSNQTNWDQFLPHVTFAYNSA
FT                 KQDTTNFSPFMLVYGREPILPTEATLLPPPNPQNSHELRDTALAIRNMAVE
FT                 NIKRRQNIDKVRYDFKHRHIEYEEGDQVKVFTPVRKIGRSEKLLLKWFGPY
FT                 YIIRKVSDVDYEIQKGSSKQSKRDIVHVSRILPYHDPWTPEAIPE"
FT   CDS           6266..8443
FT                 /product="Gypsy-3_SiOr-I_3p"
FT                 /note="Vacuolar (H+)-ATPase G subunit."
FT                 /translation="INKNVYPRFVCLLATARTHNINEENYNVEVSAGAYWK
FT                 PLPDTKIYEATIPLTYQTSWDEDQINTTVPLKNVCQNSVLNDKECIILYQM
FT                 GQLSEAFSEEFNMLNENWNTKAMRYEDPPTVRRRRALDFIGSGLSWCCGVA
FT                 TMQKLNLVEETEKHVVQRLNKINEGVSETIKKISEDSKHFKEYEKSVAKAF
FT                 ETTETRIKYIERYTEEIQKNIKNSVDKQEVLTLNMLYNQYLSLKRIVLLTR
FT                 ALRRHAIINSCKDHKIPSDLVNPRILIKDLNELNKEIFPSGQGLAIQTPEI
FT                 SRYYEIPICDCSFTSTKLFIHIKVPIIQNNRQWQLYELVTTPFAWFNQTCS
FT                 ISHEPLYMAVSVTKHLKDSMRQISGTGLHQCKPYHDKLCYIPRFSADSLQG
FT                 PQCAKKLYTGATVQEISQYCPMNCHSATAMIISEIDEEIYVLTHIKNDLEI
FT                 SCDIQTGISQYKISSNFAGQGAIKIHLPCNCHLHSTNEIIIPKKFPCVEYL
FT                 TPFNTNVVHIIPAVWSNLKSFILKPKMLHVSPTFKNLSECLNSNWTLQVPH
FT                 LNLTSTKTNIDTVIDSIKNSFPIFDSYSDTYGAHSDTLFMIWNIVLSVLVI
FT                 YLLCNRNRLAVATSLIQMVHGQGAKLDHDTSHDILFGLVCTFFIVFFLCLV
FT                 IYCIWHYFIKLKRQNNRRLKNLNRCNFNNENKNIKLSCVSSENRTFHYNLE
FT                 PNDNQNLLSLSPGDKINATIECIQIE"
XX
SQ   Sequence 9986 BP; 3801 A; 1635 C; 1685 G; 2865 T; 0 other;
     tatgtggtgg aggcgccaag ctctcttttt gaataattat aataaaataa aaattatata        60
     attaattaaa taaatatttt gactatttat aattatattg atgttagtta atttacgaat       120
     aataattatg tttatgttta ttgatttaca aatgctattc tttccaagtt ataactataa       180
     tgttttaaga taatttaatt acagtatact actccagttt ttcttattta tttttaattt       240
     tatttctaaa cacgtattta taacttcata ttatctatgg caaaaataaa taaaattaag       300
     gctttagaat atctccgaga taaaattacc ttttatataa atcaagggaa tgaaaaaaga       360
     atagttaaaa ttctcaagaa actcttaaaa attaaaatag atatacaatg tttagaaaga       420
     acgttaatag gaaagaccgt atacaaactg agaaaattaa acggagaaat taagtattat       480
     gctgacattt taattgtaaa ttggaaggaa atagcacgag ccgacttcga gttagaaaac       540
     ttcattaata caactgtgcg aatcagggta taatatatag tattgtctat ttaggttcct       600
     cgaatcttat tttaattttt tttttactcc atatttttac tgtgtgtcta ttttactatg       660
     tttcttgaat attttttact gtttatttga tacctttaac ctataaccta taataatcaa       720
     tttagaattt ttttttaaag aaaaaaaaaa aattgtattt gtgcgttaaa atttagattt       780
     atacttatga gtgatgataa aagggtaact cggagtcaaa aaaataaaga agctgtagaa       840
     agtactccac cgtatcaaag attgtctgag attgaaaata attttaatcc tactcacaga       900
     agtactagta ttaatccgtt ccaaccaaga gcatctctgt cacgtagccc tgaaaggact       960
     gcaactcccg atacaaataa actaaaattt agtcttgttt taccaaaaaa ttgtcaggaa      1020
     gaagccatac cttcatctat aatcgtaact gataattctg aaattattaa tttaaattca      1080
     ataccagtta cagaaaataa tacttgtaaa caacaaactc aaattgttaa tacacctcta      1140
     gagaaaccac gtacacttag attaaataaa accgaaaata tggctaacgc taacaacaca      1200
     actttacaaa acgctcttgc agaacaaaaa aacccggcaa cacctaaatt tctttcaccc      1260
     cctaattttg aacctagtct agactctccc atttcattca ttaaaaaata tgacagaata      1320
     gcaaattgca atggttggag cgatgtttat aaaattacgt atcttgggaa ttacttgcaa      1380
     aactcagcaa atttttggta caccgagtac atagttgatg acacaaacaa taataatgat      1440
     tgggagaaga tcaaaaaaga ctttataaaa gaatttagcg gtgaacaacc gatgcgaaag      1500
     ttaaaattca gactaaatac caggaaacaa aacgacaatg aagatattaa aaaatattat      1560
     tttgaactgc gagcgctagc acaagaaatt gatccaaaca tggcattcga aacgttccgt      1620
     gaccacttcg aaaacggact ccactcgtca tattacgaaa catattattt gatgagcaac      1680
     gcaaatatga cctacgacac tttaaaaact cttgtgctta agctaagtga aatacgagag      1740
     cgagcgttgg ttcatcaaat gacgacacaa acgtcgcttt tgtcgattac ggagaattcg      1800
     aataggcaga caagaactac atatcaagat cggaataact attctcggaa tggacgtcgt      1860
     aatacccaaa gtaattttgg aacatacagt cgtggcacat ataatcatcg aaattcaagg      1920
     ccacctaatc gtttttctaa taattttgag acaaacaaca attatggtgc cagatcagaa      1980
     cgacaaaatt atagaggaga aacccagacc attcagaaca acacaagatt ttctccaggg      2040
     caaagaggca ggggtaggaa cttttctaga ggtattccta atacaagatg ccgagatggt      2100
     agaccaagat gtacctcatg caatcggcca ggtcattatt cgtgtgagaa tgaaaataac      2160
     cgcagccaaa gaagagtgtc gttctctaga acaccatccc caaacggagg aggacggctg      2220
     aattagactg ccacaacaaa gtcgtcctat atactggggg cagtgaacac gaaattctaa      2280
     taataaaagg acatgtaaat aataattata acgtagatat aattctagac acaggatcga      2340
     gtaagtgtgt gatcagtaag catctagtca acaaaattaa gcccataaat tcacaagtta      2400
     atttggttgc agctggtggt tataggataa gtcccttagg tacttctgac gtacaattaa      2460
     aattaggcga gctctcagga tacgtttcag ctctagtagt agaaaacctc tcaagacctt      2520
     tgattttagg cacagacttc ctgtcaaaaa ataaggcaaa aattaattac gaaaaagaaa      2580
     ctgtgacatt gattagtaag aatacggaat tcattttgga ctttaataga aagcaaaatc      2640
     acaaagataa ttttcagtcg tgctctaatt tagaattatt agaaaattta gaactattgg      2700
     aaaccgatgc gaacgaaaaa caggaatgta agttaagtgt aaaagaagac tatgttttaa      2760
     aacctaatgt tgaaatcagt gtaaaaatag aagcagtgaa taaaatttta aatacagaag      2820
     atttaaacaa attgtatttt acagagaaag acgagttttt aaggaaaaaa gggattattt      2880
     gcttgaccag tccttattac gtaggaaata atttattggt agatctggta acaagaaaaa      2940
     gtaatacaat taaaatatat aaagggacta cattaggctt tttaaaacaa ccatgcaatt      3000
     ataatatttt agacttaccc ttattacaaa tagaagaaga gaaggatgag ggtgaaatcg      3060
     tcacgatggc tgatcacaag atcgaacata taaaaaacaa gaaaataaaa gatgaattac      3120
     acggactcct cgaagaattt aacgatgtgt tctctaagtc tccaaaatat atgggacgaa      3180
     ctgaactagt agagcactct atagacgttg gtgatgcgaa acctataaag aggaaagcct      3240
     acagggtgtc tcaaaaagaa cgagaaatta tagacgacca aataaaagaa atggcgaagt      3300
     acgacataat aaggccaagt aattctccat ggtctagtcc tgtagtatta gtaaagaaaa      3360
     aatccggcga aacgagattc tgtgttgatt acagacggct gaatgaagtt acgaagaagt      3420
     cgacttatcc aattcctaat atagatgaca tacttacata tatgggtaaa gctcggtatt      3480
     tttcgtcact cgacatgttt tctggatttt ggcaggtaaa aatagaggag gagtctaaac      3540
     cactaacagc atttcaagct caaggtcatg gcttgtggga attcaactac atgagtttcg      3600
     gtctttgtaa tgcacccgcc acatttcaac agttagctga taaagttttt agggatttaa      3660
     aatggaaaga aattctcata tacctagatg atattataat tttttccgaa acaatggaag      3720
     aacatttaaa taaattaaga aaagttttta cacgccttag aaatgcaggg cttacattaa      3780
     aacccaagaa atgcgaatat ttgaaagaag aaattaatct cttaggctat aatatatcgt      3840
     caaatggtat tctccccgat gaaaataaac tggtggcaat aaagaatttt ccagagccaa      3900
     agtcagtaaa agatgtacaa agctttattg ggttatgtaa ttactataga aaatttatag      3960
     aaaacttttc gaaaatagca catccgttac ataaagtaac gaaaaaagaa actggatttg      4020
     tttgggagga cgaacaaatc aacgcattca acacactaaa agaaaaactc ataagcccac      4080
     cagtcttatc ccattaccaa cctgacaaga actgtgaatt aagagtagat gcttcccgaa      4140
     taggtatagg cgcagttttg ctccaagaag atagtcagaa aaaattacat cccgtagcat      4200
     atgctagtcg cagcttatct aacgccgaaa agaattatac tataactgaa ttagaaggat      4260
     tagcagttat ttgggctcta acgtatctta ggcatttaat atatgggaaa cctgttaaaa      4320
     tcgtaactga tcatcatgct ctttgctggt taaaatcatt aaaagatcca acaggtagac      4380
     tagccagatg gtccattaaa ctttcggagt tcgaatacaa tatagttcat aaaagcggtg      4440
     tatcgcatag agatgccgac tgtatgagcc gccaccccgt tttagtaccg caagaaaacg      4500
     acgaaaccaa cgacgtccct actttcctta tagaagctac agatatctca agtgctcaaa      4560
     gacaggatag taaagttaac gaactaatta caggaatttt aaatccagaa aatgcttcta      4620
     taggtataag aagacgtgca aaaaatttca gacttgacga tggcgtctta tataaaataa      4680
     acaccagcca ccaaggaaga gaaaatttac tagtcatacc gaaacaactt gttggagaag      4740
     tcatttattc gaatcattct gaacccttga gcggacatct gggtactgct aaaacactac      4800
     ataaaataag aagtagatat tattgggatg gacttcaaaa agacgtggaa aggtttataa      4860
     aaggatgtcc tgattgccag gcaagaaaag ggcaacaaaa cagaaagcct ataggtttac      4920
     tacaaccgat accagttggt ataccctttg aaaaagtagg tatagatatt ttaggaccat      4980
     tcagaagaag cagcaatgga aagactgtaa ttgtagtagc tacagactac gctacacgtt      5040
     gggccgaaac tgaggcttta cctagcggaa aagccggccc agtagcaaaa tttatactag      5100
     agaaaattat aactagacat ggtgctccta agcatcttct gagtgatcga gggaaagttt      5160
     tccaatcgga tttagtcaga gaattattaa aacgaatggg caccactagt caatttacaa      5220
     ccgcttatca cccatctaca aatggtttaa cagaacgatt aaataaaact attgcggaca      5280
     tgatttctat gtacacgaat agtaaccaaa caaattggga tcaatttctt ccacacgtaa      5340
     catttgcgta caattccgca aaacaagata caacaaactt ctctcccttt atgttggtat      5400
     atggcagaga gcctatttta ccaacagaag caaccttatt accccctccc aacccccaga      5460
     atagtcacga attgcgagat accgccctgg caattcgaaa tatggctgtc gaaaatataa      5520
     aacgtcgtca aaatattgac aaagttcgct acgactttaa acacaggcac attgaatatg      5580
     aggaaggtga ccaagtaaaa gtctttaccc ccgtacggaa aatcggtaga agtgaaaaac      5640
     ttttgttaaa atggtttgga ccatactata taatcagaaa ggtttctgat gtagattatg      5700
     aaatacagaa gggttcatcc aagcagtcca aaagggatat agtgcatgtt agtagaatcc      5760
     taccttacca tgacccgtgg actcccgagg caatacccga gtaaatcatt catacgtata      5820
     atgattaatt cataattgaa aacaactaac ctacaattat atttgaataa ggaaatggat      5880
     agataataat aaaattatat ataggataat cattaatatt accgttatct tacgaataag      5940
     attagtttaa aacgctgttc cctcaaaaag aaaaaaaaaa ctaaatttct cgagaagagt      6000
     taaagagtgt atatatgtat acgaaacgta aataacgtaa ttatcttatt aagtacataa      6060
     ttaaaataaa ttgatatata attttatttt gaaacaaaaa taaacatata atatagtaag      6120
     taagaaaaat gaaatctaat cgtttagcga taataacata tatgaatata tgaatataca      6180
     tatatttcat atttctgtat attatataat aatgctaata tattcgtata atgaaaaaaa      6240
     aaaaaataaa gatataagga gttaaataaa taagaatgtt tatcctaggt ttgtttgttt      6300
     attggcaaca gcgagaacac ataacataaa cgaagaaaat tacaatgttg aagtaagcgc      6360
     aggtgcgtac tggaaaccgt taccagatac aaaaatatat gaggcaacaa ttccgctaac      6420
     ttaccaaaca agttgggatg aagatcagat taacactacc gtgccattga aaaatgtttg      6480
     tcagaactct gttttgaatg acaaagaatg cattatatta taccaaatgg ggcaactttc      6540
     agaagcattt tcagaagaat ttaatatgct taatgaaaat tggaatacta aggcgatgag      6600
     atacgaagat ccgccaacag taagacgaag aagagcgcta gactttatag gatcaggatt      6660
     gtcttggtgc tgtggagtgg caacaatgca aaaattgaat ttagtcgaag aaactgagaa      6720
     acatgtggtt caaaggttaa ataaaatcaa cgaaggtgtt tccgaaacta taaaaaagat      6780
     tagcgaagac tcgaaacatt tcaaagaata tgaaaaatca gtagcaaagg catttgaaac      6840
     cacagaaact agaataaaat acattgagag atatactgaa gaaattcaga aaaacataaa      6900
     aaactctgta gacaaacaag aagtattaac gttaaacatg ctttataacc aatatctaag      6960
     tttaaagaga atcgtactcc taacaagagc attaagaaga catgccatta taaactcatg      7020
     caaagaccat aaaataccgt ccgatttagt taatccacga attttaataa aagacttaaa      7080
     cgaattgaat aaagaaatat ttccctcagg tcaaggactg gccatccaaa cacctgagat      7140
     atcaagatac tacgaaattc ctatttgcga ttgttcattc acaagtacta aattattcat      7200
     acacatcaaa gttccgataa tccaaaacaa ccgacaatgg cagttatatg agttagtaac      7260
     tacaccattt gcatggttta atcagacatg ttcaatatca cacgaaccac tttacatggc      7320
     agtatcggta acaaaacatc ttaaagatag catgagacag atatcgggaa caggtctaca      7380
     ccagtgtaaa ccctatcacg acaaattgtg ctacatccct agattctctg cagatagtct      7440
     acaagggcca caatgcgcga aaaagttata tacaggagca acagtacaag aaataagcca      7500
     gtactgccca atgaattgcc actccgcaac agcgatgatc atatccgaaa tagacgagga      7560
     aatatatgta ctaacacaca tcaaaaacga tttagagata tcatgtgaca tacagacagg      7620
     catcagccaa tacaaaatat catcaaactt tgcaggtcaa ggcgctataa aaattcatct      7680
     accttgcaat tgtcatttac attccactaa cgaaattatt ataccaaaga aatttccgtg      7740
     cgtagaatat ctaactccat tcaatacaaa cgtagttcat attatacctg cagtttggtc      7800
     aaatctaaaa tcttttattc ttaaaccaaa gatgttacac gtctctccaa ctttcaaaaa      7860
     tttatctgaa tgtttaaatt caaactggac ccttcaggtg ccgcatctca acttaacctc      7920
     aactaaaact aatatcgata cagtcataga ttcaattaaa aattcgtttc caatatttga      7980
     ttcttatagt gatacctatg gcgctcacag tgatacttta ttcatgatat ggaatatcgt      8040
     attatctgtc ttagtaatat atctcttatg taatcgtaat agactagcag ttgcaacgtc      8100
     attaattcaa atggttcacg gtcaaggtgc gaaacttgat cacgacacgt ctcatgacat      8160
     actttttggg ctagtttgca cttttttcat tgttttcttt ttatgtttag ttatttactg      8220
     tatttggcat tactttataa agttaaaaag gcaaaataat aggcgtttaa aaaatttaaa      8280
     tagatgtaat tttaacaatg aaaataaaaa tattaaactc tcttgcgtat ctagcgaaaa      8340
     tcgaacattt cattataatt tagagccaaa tgataatcag aacctcctat ctctatctcc      8400
     tggggataaa ataaatgcaa ctattgaatg catacaaata gaataagtat tgtgtatacg      8460
     tgtattggaa aggcaactct gtatgcccaa gttagtcttc ttcaaaataa aatcaagatg      8520
     gaatattgaa ataattggaa aaaagatatg tttttcttaa cataaaatat taatgatgtc      8580
     tttattaatg acatgtatta ttggagctcc cctagtgtgt aggttttaaa ttgatattta      8640
     accctaactg cgcgcaaact ctaggacaaa tatcaatttg aaacgaaaag tattgaacca      8700
     ctagagttaa ttatttagcg cttaatataa aaaataaaag aaataaagta aattattata      8760
     aacccaaatg taggtaggag atagagggca tacaaattag gtaggagtgt tcataaatcc      8820
     tacaaatttg caacgaaaat ataagtttat tgtttgtttt acgcccaatc atataaaatt      8880
     tttatattct cccttgccgt caagaacaaa aaaaaatgat attctgaact aagttgaaaa      8940
     atgaaattaa acaaacaaac ttaaaatagg attaagtttg atatacttta agaactagtt      9000
     tataagacat aataatttaa tacaataagc tgtaagtaag agcacatatt tactctttgt      9060
     tctctttttt catgtaatta ctggtcaaaa ctgccaatac caagcaacaa gtcaaggaac      9120
     accactgaga agaatcgacg tatggactca accccgaagg agaaagaaga atgtagtacc      9180
     acaccatcat gcctatacga tgcaaactgc ctacccttgt ttatgaagct ttgtgaacag      9240
     tacactatgg taatgcagtc cgaagcaagt agtccaattc aaaaatgggt tcagaacgtg      9300
     ctgtcaaatt tggtttggcg atataagcag ctacaggaag agttattgtc ttgtctaaaa      9360
     actggtctct tcttcgaaag atgaattcga cgccaatcca gatgacaaac aaaatcatac      9420
     tggaattttg tttccattgt cagcctacac cgatatcaag aaacaactcc ctaaggacgc      9480
     aagtattgag aaacagctta ccaaaacaaa gagcttttca aagtgcaggg aacgggaggc      9540
     atgtgtgcat tcgttaggtt tatgatgtga aggtggatac tacaatcaaa acttcagttt      9600
     tcagcctccg tgagcagccg acgagatttg tgggtgggtg ttttatgaac gaagtcagtg      9660
     caaagtattg aaacttaaaa actatatagg tattgtgcag ttcacgttag tgccagtatt      9720
     aaaagacatt tttttttgtc tatatgtaaa cggctaatcg ccatccttaa acttatagag      9780
     aagctttttt ttatattttt ttttagttag taatttcttt aaaaacattt tttttaattt      9840
     ttttttaata ttgtatactt aaaacatttt tttattatga aacgttaagc acaatttatt      9900
     gcaatgtata ataattattg ttaaaaagta taatttcata aatcttgaat tatcgctggg      9960
     gtccagcttt agaggtgcgg gggaag                                           9986
//
ID   Gypsy-3_SiOr-LTR repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 26.01, Created)
DT   30-OCT-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-574
RA   Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 328-328 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 574 BP; 207 A; 93 C; 97 G; 177 T; 0 other;
     tgtcaaggat ggaattattc gatatataaa ataacatatt taatattaat atatttcgta        60
     aattaataat tcgattgaaa ggaagtataa aataattaaa gttcattggc atttacgcaa       120
     caaaagtaaa gttttaaaaa tcaaagttat aagcataatt ggcaattgcg aaaatatttc       180
     ctttcaatac tacgaatttg taaaatcatc aaatcagcac taacgcggtc atcgcaccgg       240
     tcatcgcacc gatagaccaa taatgctgat tcgatgattc gacgtaacga accaataaat       300
     acaaaaaatg tcacctgttg gggacagtcg acagtcgata gtcgatagta agttcgataa       360
     ggtcgcggtc gagattccgg cattggcgtt acactaccct gacactaccc ccgagccagt       420
     gatgatgttc gtccataaat ataatatgta agtacacatt tagttttata attattgtat       480
     tattcgtaga ttaattaaat tgattattaa gttaaattga agtatttatt atttgctatg       540
     cccctagtca taacccacaa aatggggtgt gaca                                   574
//
ID   Gypsy-3_SpEx-I repbase;    DNA;    INV; 4429 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4429
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4076-4076 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..852
FT                 /product="Gypsy-3_SpEx-I_1p"
FT                 /translation="MTHSPCKSSSSQQEALEISAGTAILSRIPEFWRDQPR
FT                 LWFKQLEAIVAPQKQGDDYKYYTVIAKLPKEEIIQVSDLITCPPPIEKYKA
FT                 IKERLISCYEESDQRQLQKLLSEMDLGDQKPSHLLRKMRTLSNGNISDETI
FT                 KLLWLRLLPPSVTSVLAVTEDIDVNKMSQIADKILINSTRTEVSAVNGNKS
FT                 GDDTMSCILAQLAEMQLELNAIQQGQKNYRRSTQSYSNRRHFLPQSSSRER
FT                 RHFCFYHGRFKKYAQKCVQPCDWKQDLNSRKQGN"
FT   CDS           816..3929
FT                 /product="Gypsy-3_SpEx-I_2p"
FT                 /translation="LETGSQLKETGKLIEARTTAELCAIHPSNRLTITDRK
FT                 SGMRFLIDTGANISVISKPQRHSLIQDEQCILYAANGTKIKTYGEKTLSLN
FT                 FGLRRNFVWNFVIADVTQPIIGADFLEHYKLLVDIAGRKLIDRVTELTTPA
FT                 TLIKSTQQTIRTINIETNPRITQLLNEYEDITKPASLHTTPKHKIKHHIIT
FT                 KGPPVSARARPLPPDKYHIAKKEFQTMMELGICRPSDSPWASPLHMVKKKN
FT                 GEWRPCGDYRMLNSVTVPDKYPLPRLTDFTYILEGKQIFSKIDIRKAYHCI
FT                 PVENVEKTAIITPFGLFEFPKMPFGLRNAAQTFQRFMDSLFRDLDFVFIFV
FT                 DDCLIASENEALHYQHLDTVFKRLHENGLTINLEKCDFLKSEIDFLGYHTT
FT                 RRGIRPTEEKYKAIMEFPKPTTIKELRRFLGMINFYRNNLPHAAEYQTILN
FT                 NYLHDSKKNDNSPISWTTEAEKAFDKCKENIMNAVLTVHPSRTAPLALMTD
FT                 ASSTCVGAVLQQKSGRNWEPLGFFSKKLSDTQQKYSTFDRELLGIYMAVKH
FT                 FQRLVEGREFTIFTDHRPLTYAFSQKPSSNDTPRRIRQLDFISQYCTNIQH
FT                 IEGRDNIVADALSRIEQIDVPSPINYADLARCQHDDQELLRLRNNKNLKFS
FT                 NIKVPGSTEVIACDISTGKNRPYLPEKFRRQIFNVMHGLSHPGKRATRKMI
FT                 TQRYLWTSMNKDINEWCKSCLACQKSKVQRHTISPVGNFMPSQRFEHLHID
FT                 IVGPLPVSQGKRYLITMIDRCTSWPEVFPVKDITAETVARILYEGWIARFG
FT                 CPLRITTDQGRQFESRIFESLSQFLGVHKIRTTPYHPQSNGMIERFHRTLK
FT                 AALISRESNANWMNEIASVLLGLRSCVREDTGYSAAEMIYGAPIRLPGEFF
FT                 ESSQPSTYEEFVTNIQKDISRMTSTSKRKKIKQTVFIHPELNKCSHVFVRC
FT                 DRIRKSLTPPYEGPFLVTKRIDKTFIIKIGDNEKAISIDRLKPAFVFNSGT
FT                 NVPNSENNHNGRNTYITKSGRAVKPTVRFVTC"
XX
SQ   Sequence 4429 BP; 1550 A; 916 C; 840 G; 1123 T; 0 other;
     ttggtgaccc gacgaagaac aatcaacatg actcattcac cctgcaaatc aagcagcagc        60
     caacaagaag ccttggagat atcagccgga accgccattt tatcccgtat tccggaattt       120
     tggagggacc aacccagatt atggtttaag caactagaag ccatagtagc accacagaag       180
     caaggagacg attacaagta ctatacggtc attgcaaaac tgccaaaaga agaaataata       240
     caggttagtg acctcattac ttgcccaccg ccaatagaaa agtacaaggc tatcaaagaa       300
     cgcctaatca gttgctatga ggaatcagac caacgtcagc tccaaaaatt attgtctgaa       360
     atggatctcg gcgaccagaa accatcacat cttctgcgca agatgcggac cctgagtaac       420
     ggaaatatca gcgacgaaac catcaaactt ctatggttga ggcttctgcc accatcagtg       480
     acttcggttc tagcagtcac agaagacata gatgtgaaca agatgagcca gatcgcggac       540
     aagatattaa taaattcaac acgtacagag gtgtcagctg taaacggaaa caaatctggc       600
     gacgatacaa tgtcatgcat actagcacag ttagcagaaa tgcaattgga actaaatgca       660
     attcagcaag gtcaaaaaaa ctatcgacgc agcactcaaa gttattccaa tcgtcggcat       720
     ttcctaccac agtcaagttc aagagaaaga aggcactttt gtttttacca tggaagattt       780
     aaaaaatatg cacaaaagtg tgttcaacct tgtgattgga aacaggatct caactcaagg       840
     aaacagggaa actaattgaa gcacggacaa cggcggaact ctgtgctatt cacccgtcca       900
     accgcctcac tattaccgac cgaaaaagtg gtatgagatt tttgattgac acgggagcaa       960
     atatttcagt tattagcaag ccacagagac attcactaat acaagatgaa caatgtatac      1020
     tttatgccgc caatggtaca aaaattaaga catatggtga aaaaacactc tctttaaact      1080
     tcgggctacg aagaaacttt gtatggaact ttgtcatcgc cgatgtaaca caaccgatta      1140
     ttggagcaga ttttttagag cattataagc tattagtcga tatagctggt cgaaaactca      1200
     tagatagggt aactgagctg acaacgcccg caaccctgat caaatcgacg cagcaaacaa      1260
     tccgcactat taacattgag acgaatccac gcattactca actattaaat gaatacgagg      1320
     atattacgaa accagcctcc ctccacacta ctccaaaaca caagattaag catcatatta      1380
     tcactaaagg accaccggta tcagcacgtg caagaccatt acctcctgat aaatatcata      1440
     tagcaaagaa agaatttcag actatgatgg agcttggcat ttgtcgccct tcggacagcc      1500
     catgggctag tcctttgcac atggttaaga aaaagaacgg tgaatggaga ccatgtggag      1560
     attatagaat gctcaatagc gtgactgtac cggacaaata tccacttcca cgactaactg      1620
     atttcactta catactagaa gggaagcaaa tcttttccaa aattgatatt cgaaaggcgt      1680
     accactgcat tcctgtagaa aatgtggaaa aaactgctat tatcactcct tttggacttt      1740
     tcgaatttcc aaaaatgcct ttcggtttac gtaatgcggc gcaaacattc caacgattca      1800
     tggactcgct attcagggat ttggatttcg tattcatatt cgtcgacgat tgtcttatag      1860
     catctgaaaa cgaggctcta cattatcaac atttggatac ggttttcaaa cgtttacatg      1920
     aaaatggatt aacaattaat ctcgaaaaat gtgactttct taagagtgaa atagattttc      1980
     tgggttatca tacaacacgt cgaggaatac gaccaacgga ggaaaagtac aaagcaatta      2040
     tggaatttcc taaacctacg acaatcaagg agctaagaag atttttagga atgatcaact      2100
     tttacagaaa caatctccct catgccgctg aatatcaaac tatcttaaac aactacctgc      2160
     acgactctaa aaagaatgat aattctccaa tttcttggac aacagaggcc gaaaaagctt      2220
     ttgataaatg caaggaaaat ataatgaacg cagtattaac agttcacccc tctcgcaccg      2280
     cccctttggc acttatgacg gacgccagtt cgacctgtgt tggcgcagtt ctgcagcaga      2340
     agtcaggacg taattgggaa ccattaggat tcttttcaaa gaaattaagt gatactcaac      2400
     aaaaatactc gacattcgac agagagttgc tcggaatata tatggcagtc aaacattttc      2460
     aaaggttagt cgaaggaaga gaatttacta tctttacaga tcatcgacct ttgacttacg      2520
     cattttccca aaaaccgtca tctaatgata cgccacggcg aatacgacaa ctggatttta      2580
     tttcacaata ttgtaccaac attcaacata tagaaggacg tgacaatatt gtagcagacg      2640
     cattgtcacg gatagaacaa attgatgtgc catcaccgat taattatgct gatttagcaa      2700
     gatgtcagca tgatgaccaa gaattattac gacttcgtaa taacaagaat ttaaaatttt      2760
     caaatatcaa ggttccgggt tctactgaag tcatcgcctg tgacatatct acaggaaaaa      2820
     atcgccccta tttaccagaa aaatttcgga gacaaatttt taatgtcatg catggactga      2880
     gtcatcctgg gaagagagct actaggaaaa tgataactca aagatattta tggacaagta      2940
     tgaataaaga tataaatgaa tggtgtaaat cgtgcctagc ttgtcaaaaa tcaaaagtgc      3000
     aacgccacac tatatcacct gtcgggaact ttatgccatc tcaacgtttt gaacatctac      3060
     acatcgatat tgttggaccg ttacctgttt ctcaaggaaa gcgatattta attacaatga      3120
     tagatcgttg tacttcttgg ccggaagtat ttcccgttaa agatatcaca gccgaaacag      3180
     tagcgcgcat actgtatgag ggatggatag caagattcgg atgcccatta cgcattacta      3240
     cggatcaagg tcgacaattt gaatcaagaa tatttgaatc actttcacaa tttttaggag      3300
     tacacaaaat tagaacaacg ccttatcacc cacaatcaaa tggaatgata gagagatttc      3360
     atagaacttt aaaagcggcg ctaatatcaa gagaatctaa tgctaattgg atgaacgaaa      3420
     ttgcttcagt tctacttgga ttacgaagtt gtgtacgcga ggacacagga tatagtgcag      3480
     cagagatgat atatggcgca cctataaggc ttcccggaga attttttgaa tcgtcacagc      3540
     cttcgacata cgaagaattt gtcacaaata tacaaaagga catttctcgt atgacatcaa      3600
     catcaaaacg caagaaaatt aaacaaacag ttttcattca ccccgagctc aacaaatgct      3660
     cacatgtatt cgtgcgctgt gacagaataa ggaaaagttt aacaccacca tacgaaggac      3720
     catttctagt gacaaagagg atagataaga cgtttatcat taaaattggg gacaatgaaa      3780
     aagcaatatc tatagaccga ttaaaacctg catttgtctt caatagtgga acgaacgtgc      3840
     caaattcaga aaataatcac aacgggcgga acacgtacat cacgaagtca ggacgggcgg      3900
     ttaagccgac agtacgattc gtcacttgct gacacaagta atcagtccat ttaaatactc      3960
     accgtatttt gaaaatacca tcatataccg tcagtatcta cgagagaaca atgggcaacc      4020
     aaagctccaa agatcaaatc gtatataact ccgacagttg ccttaatcaa aatgaagccg      4080
     accatctcaa aagtcttgtc ctggaagagc tacggtggac gagaaacatt gcaattggac      4140
     aaatcctcat cacaattggc atccttcttc tctacggaat actgaagacc ttagacagaa      4200
     gagtgaaaac aatagcaaga aacaatcagc acaaatgcag tggatagttc atcgactgcc      4260
     gccgccgtca caacaaaggc agcagttttt atttccttcg aattagcaac aatgacatta      4320
     cattacgcat aggatgtaat ttatcagcaa ggttaagtta ttatataatt aggtacatac      4380
     taattttttt caatttatat gttaattatt tttaaaaggg gggagtata                  4429
//
ID   Gypsy-3_SpEx-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-201
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4132-4132 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 201 BP; 68 A; 42 C; 32 G; 59 T; 0 other;
     tgtagcggca ctatcacgtc gctacattac ttagatacga tagagataag acatacatgt        60
     taattgttgc acgtttgtta ggatagctaa atctgaaaat ctcacgcatc ttcttagtat       120
     ataagcacca gcaattaaag taataaacag accttaacca tctacagtct cattatttac       180
     cttgccacga agtctggcaa a                                                 201
//
ID   Gypsy-3_SpFr-I repbase;    DNA;    INV; 4728 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4728
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1836-1836 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..4703
FT                 /product="Gypsy-3_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTEDVGDTRCRVAGLECLKLSSEATANNAEAWRKWW
FT                 QRLELYLLASGLDRSEEKRKVAILLHSIGPKGLEIFNTFNISLDQAKIEDV
FT                 KAKFDLYFEPRKNLTMCRYIFFTRRQAQSESIDDFITDLEIKSQDCEFGTL
FT                 RESMIRDIFIANLHMDLSHIRQRLLQEPNLTYERMRELAKTLIVAQQDADK
FT                 MTNKSIVEDGEKVMQLRQRSGGRRVCRQRASSQTPHRATWKSPSPMRQSAS
FT                 TCGRCGQSHRTKCPAIGVQCRSCNSFGHYAKFCYKNKQVRQLHSFTSKSIQ
FT                 NDNYFVGILNSQSSQNHLSHSHKQSYSQPQTQSYSQPQKQSKSQSYSQTPV
FT                 KSHSHTSQTSQICQNKNSPSLGNLHDDNAYCTERLHRHNKNSLTSQSLNKN
FT                 SPISQISQNKNSQSEHYYHCYTNKSPSVSRKTINNNKNSHSLGQGHVNYNK
FT                 SNKNSQSVNKSHNTHFQNIHHHKYTKKSHHCQSNVSNSASETNNHNMHSNI
FT                 PNVASHLNNLNQQISHVKGNSVSENHYSGSSWKINLHVGNRKINCVIDSGA
FT                 DVNVISVKNFKFLNLSKSQIDKCHVNVTGFGGNNIPILGKVNLKCNLNIEN
FT                 RNICENIVFIVANILCPTVLGLPTCEKLGIIKRVFSVTKQDFCKQILTQYD
FT                 DLFKGLGCLPPVCHLKLKPGAVPCIDPPRKVPFALQGKLREELDRMEQMQV
FT                 IQKVTKPTEWVNSVVVTVKSSGQLRICLDPRNLNNCIMREHYPLKSIDEIR
FT                 SQLKGAACFTHLDAFSGFWMIKLDEYSSDLCTFQTPFGRYRYLRLPYGISA
FT                 SSEIFQRIMMNLFGDLEGVLIFIDDILVHGPNESVHNERLHKVMQRARQVN
FT                 LKFNKSKCKFLVSEVCFLGYVFNKDGARVDQEKVKAILEMPTPTNVKELQR
FT                 ILGMINYLGPFIKNLSEKTQILRNLLKKDSVWIWDENHEKCLKILKEEITR
FT                 SPVLAHYNPQIPLVLSVDSSKSALGAVILQNNKPIAYSSKTLTITQERYAQ
FT                 IEKELLAIQFGCEKFHQYVYGHRVTVHTDHKPLVYLFKKPLHDVPARLQRM
FT                 MLTLQKYDLEVIHVPGKEMYISDTLSRAAIQENYVPENESEMSCHVNLMYS
FT                 NLAISKEYSTKLSQETKKDESLQLLKKYYYEGWPKNKNNVSPLLKPYWNIQ
FT                 AEIHVIKDLIFKGSKLIVPKSMYKEMLDKIHKGHQGINKCLKLARESLYWP
FT                 NMSTDIKNIVEQCLICAKFKPCNQKEPLQNFEICKYPWQQVGIDLMYFDNL
FT                 TYLIVTDYYSKFIEIALLNKDSRSSNVITHLKSIFARHGIPLSLVSDGGPQ
FT                 FQSVEFKNFLNEWDIEHVVTSPYHSQSNGQAESSVKIVKNMLRKCKENGSD
FT                 PYIALLHYRNTPKNNLSSPAQLLMSRTLRDNIPVSYKRLKPKVVRFKEYEK
FT                 SVVKNNLNKSKYYNRNTKPLSMLQPNDHVYFKRNPKSHWEHATVKERCPDN
FT                 RSYIVEDINKVRYRRNRVHLRHKYCNGSDNPTPMRSNSSQGRDEGDRQEPE
FT                 NPKFPQLYKTKSGRVVRPTQRLIDEID"
XX
SQ   Sequence 4728 BP; 1736 A; 791 C; 891 G; 1310 T; 0 other;
     tggtgtcaga agtgaaagta acaacgaaat aaagaagatt cgtttgttaa cggaaaatta        60
     aatttaaaaa caaaatgtct accgaagacg tcggcgacac gaggtgccgt gtggccggtc       120
     tggagtgtct taagttgtcg tcggaggcaa ccgcgaacaa cgcggaggcg tggaggaaat       180
     ggtggcagcg actggagctg tatctgctgg catcaggtct agacaggtcg gaggagaagc       240
     ggaaggtggc cattctgctt cacagtattg gccctaaagg tctcgaaatc ttcaatacat       300
     ttaacatcag cctggatcaa gccaaaatag aggacgtcaa ggccaaattc gacctgtact       360
     ttgagccacg gaaaaatctt accatgtgca ggtacatatt ttttacaagg aggcaagctc       420
     aatccgagag catcgacgat tttatcaccg atctggagat aaagagccag gattgcgagt       480
     tcggaaccct gcgcgagtcc atgatccggg atattttcat cgccaacctg cacatggatt       540
     tgtcacacat ccggcaaagg ctgttgcaag agcccaacct cacctatgag aggatgcgag       600
     agttggcgaa aaccctaatt gtcgcacagc aggatgcaga caagatgaca aacaagtcca       660
     tcgtcgaaga cggcgagaag gtgatgcaac tgcgtcaaag gagcggcggt cgacgagtct       720
     gtcgacagcg tgcttcaagt caaacgccac atcgggccac gtggaagtct cccagtccga       780
     tgaggcagtc agcatcaacg tgtggtcgct gtgggcagtc tcatcgaacg aagtgcccag       840
     cgatcggagt acaatgcagg tcatgtaact catttggtca ttatgctaag ttttgttata       900
     agaataaaca agtcagacag ttgcattcat ttacttcaaa gtcgatacaa aatgataatt       960
     attttgtagg aattttaaac agtcagtcga gtcaaaatca tcttagtcat tcacataaac      1020
     agtcatacag tcagccacaa acacagtcat acagtcagcc acaaaaacag tcaaaaagtc      1080
     agtcatatag tcaaacacca gtcaaatcgc actcacacac cagtcaaaca agtcaaattt      1140
     gtcaaaacaa aaatagtcca agtctaggta atctccatga tgacaatgct tattgcactg      1200
     agagattaca ccgtcataat aaaaacagtc ttacaagtca aagtcttaat aaaaatagtc      1260
     ctataagtca aataagtcaa aataaaaata gtcaaagtga gcattattat cattgctaca      1320
     ctaataaaag tccgtccgtc agtcgtaaga caataaataa caataaaaac agtcatagtc      1380
     taggtcaagg acatgttaat tataacaaat ccaataagaa tagtcagtcc gtcaataagt      1440
     cacataatac acacttccaa aacattcatc accacaagta cactaagaag tcacatcatt      1500
     gtcagtcaaa tgtaagtaat tcagcatcag aaacaaataa tcacaacatg cattcaaata      1560
     taccaaacgt agcatctcat ctaaataatt taaatcaaca aattagtcat gtcaagggta      1620
     attcagtttc agaaaatcat tattcaggta gttcatggaa aataaactta catgtgggta      1680
     accgaaaaat aaattgtgtc atagactcag gcgcagatgt aaacgtcata tctgtcaaaa      1740
     acttcaaatt tcttaatctg tcaaagtcac aaattgataa atgtcatgta aatgtcacag      1800
     gatttggtgg caataacatt ccaattctag gcaaagtaaa tttaaaatgt aatttaaaca      1860
     tagaaaatag aaatatttgt gaaaatatag tgttcattgt agcaaatata ctctgtccaa      1920
     ctgtcttagg tcttcccact tgtgaaaaat taggtataat aaaacgtgta ttttccgtca      1980
     caaaacaaga tttttgtaaa caaattctta cacaatatga tgatttgttt aagggtcttg      2040
     gatgtctacc cccagtctgt catctgaaac tcaagcctgg tgcagttccg tgtattgatc      2100
     cgccaaggaa agttccgttt gcgttgcaag gaaaactgcg cgaggaattg gatcgcatgg      2160
     agcaaatgca agtcatacaa aaagtcacaa aaccaactga atgggtaaat tctgtggtag      2220
     tcactgtcaa aagttcaggt caattaagaa tatgcttaga tcctagaaac ttaaataatt      2280
     gtataatgag agaacattat ccgttaaagt ctattgatga gataaggtca cagttaaaag      2340
     gtgctgcatg ttttacgcat ctagacgctt tctcaggttt ctggatgata aagttagatg      2400
     aatatagttc agatttgtgt actttccaaa caccatttgg tagatacagg tacttaagat      2460
     tgccttatgg cataagtgct tcgtctgaaa tatttcaaag aattatgatg aatttgttcg      2520
     gtgatttgga aggagtttta attttcattg atgatatttt agtacatggt cctaatgagt      2580
     cggttcataa tgaacgacta cataaagtta tgcaaagagc acgtcaagtt aatttaaaat      2640
     ttaacaagtc gaaatgtaaa tttctagtgt cagaggtatg ttttcttggt tatgtattta      2700
     ataaagatgg tgctagggtt gatcaagaga aagtcaaagc aatactcgag atgcccacac      2760
     caaccaatgt caaagagttg caaagaatat taggtatgat taattaccta ggtccattca      2820
     tcaagaattt gtcagaaaaa actcaaatat taagaaatct tttgaaaaaa gattcagtct      2880
     ggatttggga tgagaatcat gagaaatgtc ttaaaatttt gaaagaggag atcacaagat      2940
     caccagtctt agctcattac aatccacaaa ttccattagt cttgtcagtc gattcgtcaa      3000
     agtcagcatt aggtgcagta attttgcaaa ataataaacc tattgcatat agttctaaaa      3060
     ctctcaccat aacccaggaa agatatgctc aaattgagaa agaattgtta gcaatacaat      3120
     ttggttgtga aaagtttcac caatatgttt acggtcatag agtaacagta catactgatc      3180
     ataaaccatt agtctattta tttaaaaaac cacttcatga tgtacctgca agattacaac      3240
     gtatgatgtt aaccttgcaa aaatatgatt tagaagtcat acatgtacct ggtaaagaaa      3300
     tgtatatatc agatactttg tcaagagcag ctattcagga aaattatgta cctgaaaatg      3360
     agtctgaaat gtcatgtcat gtaaatttaa tgtattcaaa tcttgcaatt agtaaagaat      3420
     atagcacaaa attaagtcag gaaactaaga aagatgaaag tttgcaattg ttaaagaaat      3480
     attattatga aggatggcct aaaaataaaa acaatgtaag tccattatta aaaccatatt      3540
     ggaatattca agctgaaatt catgtaatta aagatttaat atttaaaggt tcaaaattaa      3600
     ttgttcctaa gtcaatgtat aaagaaatgt tagataaaat acataaaggt caccaaggta      3660
     taaataaatg tttgaaatta gctagagaat ctttgtattg gccaaatatg tctacagata      3720
     taaaaaacat agtagaacaa tgtttaatat gtgctaaatt caaaccatgt aaccaaaagg      3780
     aaccactaca aaattttgaa atttgtaagt atccatggca acaagtcggt atagatttaa      3840
     tgtattttga taatttaact tatctaattg tcactgatta ctactcaaaa tttatagaaa      3900
     ttgctttgtt aaacaaagac agtcgttcaa gcaatgtaat cacacattta aagtcaattt      3960
     ttgcacgtca tgggatacca ttatctttag tgtctgatgg tggtccacaa tttcagtcag      4020
     tagaatttaa aaattttcta aatgaatggg acatagaaca tgtagtcact agcccatatc      4080
     attcacagtc aaatggtcaa gcagaaagct cagtcaaaat tgtcaaaaat atgctaagaa      4140
     aatgtaagga aaatgggtca gatccataca tagcattatt gcattataga aacacaccta      4200
     agaataatct gtcgtcaccc gctcaattgt taatgtctag aactttaaga gataacatac      4260
     cagtgtcata taaaaggtta aagccaaagg ttgtaagatt taaagaatat gaaaagtctg      4320
     ttgtcaaaaa taatttaaat aagtcaaagt attataatag gaatactaaa ccattgtcta      4380
     tgttacaacc aaatgatcat gtatatttta agagaaatcc taagagtcat tgggaacatg      4440
     ccactgtgaa ggaaagatgt ccagataata ggtcatacat tgtagaagat ataaataaag      4500
     tcaggtatag gagaaatagg gtacacttaa ggcataaata ttgtaatggc agtgacaacc      4560
     ctactcctat gaggtccaat tcttcgcagg ggagagatga gggtgacaga caggagccgg      4620
     agaatccaaa attcccacaa ttgtataaaa ctaagtcagg tcgtgttgtg agaccaacac      4680
     aaaggttaat cgatgaaata gattaatttt ttaatttaag aaggggga                   4728
//
ID   Gypsy-3_SpFr-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-201
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1861-1861 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 201 BP; 69 A; 39 C; 28 G; 65 T; 0 other;
     tgttacatca ctaatttagt atcattcgtt catgtcatta ccccgtcact atggtctgag        60
     gtcaacgacc actgtcgttc tagtgtgtgt cgagtgcagt cgcacctatt aatatagtaa       120
     ataattaaca ttgtaaaata atgtaaaata taagtcatct cacatcaagt cgtttaattt       180
     aataaacaca acaacaatac a                                                 201
//
ID   Gypsy-3_TCa-I repbase;    DNA;    INV; 4213 BP.
XX
AC   ChLG4;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_TCa_;
KW   Gypsy-3_TCa-LTR; Gypsy-3_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4213
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG4; Positions 3682049 3677837.
XX
CC   'CTTTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..2345
FT                 /product="Gypsy-3_TCa-I_2p"
FT                 /translation="MHFRHKWPSWSKNMRISWHKHRPRVQASDTPSKQAPT
FT                 SSIVFSNSIPIPEKFSFEKEDWQVWITHYERFRTATKLDKSTQAEQINSLL
FT                 LHMGAKVTKFMEAKQKQETDFPSYKALKEFFDNEFKDTPNTIYARAKFNRR
FT                 DQREGEDAQTYIADVISLAKTCNYRDLEEELIRDRLVVGIRDEKLSENLQM
FT                 NDKLTLKTAIDKITQVERIRTENRELRVREETVNRVARDKAKKFNHKSVKY
FT                 EGKQRRSKDGKQQSEHKFKGCIRCGNSNTHNRMECPANGQTCHKCNFKGHF
FT                 ASRCKTKNVNAVESETSISDDTDDSYDSSYDCREIININRVKLDKPWEAVA
FT                 EIFNTNIVFKIDTGADETIISSKEFKDKLQGKVKLQRTKTTLLGPGKGNQR
FT                 KLEIKGEIVVPLKWENKIENVRCFVVDTPDNLLGRPALQKLDMIKWTGKEL
FT                 VASDSVIRHVTSRKADEKFQHKMMVKYPEVFKGLGTLKNFEYTIEVKSDAQ
FT                 PWTLNTPRRIPLPMMDVVKKELDKMIREDVIEAINEPTEWCAPMVIAAKKN
FT                 GKIRVCSDYTELNKCVNRELYQLPSVDETISKLKDAKWFTKLDFSSGFWQL
FT                 KLSPQSRKYTCFLTPFGRYVYKRIPFGITSAPEVFQKTISGVIGKLKMEHV
FT                 HVHADDILITGRNEADHDTNVNKVLTLLSDHGLTLNKSKCEFKTNKTLYLG
FT                 YLISENGVQADPKSVEAINNYPAPSSVTEVRTFLGMVNYVSKFIVNTSEKN
FT                 PIIT"
FT   CDS           2296..4140
FT                 /product="Gypsy-3_TCa-I_1p"
FT                 /translation="MSQNLSLILRKKTQSLRELLHKDKQFVWTDKHQADFE
FT                 KLKSEIASSRVLAKFSTDKKSRVSADASSFGLGAVLEQLQSDGNWKPTYFC
FT                 SRTLEPCEQAYAQIEKEALAITWACERLENFLLGAHFEIHTDHKPLTVILA
FT                 TKELNKLSNRLQRFRMRLLKFNYTIEYVPGKTFFVPDALSRAPIQGRIRHQ
FT                 DPLLEDIQNLYINFVMREVVTEICSTEEIKSYQNKDPTYSKLKEYVKNGWP
FT                 QKHKSDPLVSKFFSHQQDLSIAHDIVCYKDRVVIPGPLQKKCLYVLHDGHF
FT                 GINKCLDRAKATVWWPGITRELKEVVGKCEICIKLRRPTVDPMLPSEVPSR
FT                 PWQTIGADLAEYHESTYLVVQDYYSKYPEIRKLRTTKAKVVIETFKEMFAR
FT                 HGIPEVVRSDNGKQFDCHEYRTFSRKYGFKLITSSPHYQQSNGQAESAVKL
FT                 LKTILRKNEDPYLALLTYRNTPTKCGLSPAQLLFGRNLRDRLPRLPSGLKP
FT                 ATIDHDTVRQTLINNQAEQKSNYDKRHRVTKEEKNLKEGDRVWIINMQKEG
FT                 EVQRRCEEPRSYLIETDGGCVRRNRRHLQPLPDRNNEPEHDPEQPDESEEP
FT                 KKRPIRRPKRYQDYYCY"
XX
SQ   Sequence 4213 BP; 1513 A; 851 C; 872 G; 977 T; 0 other;
     tggtgtcagt gttttaaaat ccgaatcccg ctcgtgttac aaattgtgag tgtaaaaaac        60
     caccacaact atcacgatgg atgcacttca ggcacaagtg gccgagttgg agcaaaaata       120
     tgcggatctc atggcacaag cacaggcccc gggttcaggc gagtgacaca ccgtcaaagc       180
     aggctccaac gagtagcatc gtcttcagca actccattcc gattccggag aaattttcat       240
     tcgaaaaaga agattggcaa gtgtggatta cacattatga acgttttaga acagcaacaa       300
     aactagacaa aagcacacaa gcagagcaaa ttaatagttt attgttgcat atgggggcga       360
     aagttacaaa gtttatggag gctaagcaga aacaggaaac cgattttcct agttacaaag       420
     cgctgaaaga attctttgat aacgagttca aagacactcc taatacaatc tacgcacgag       480
     ctaagtttaa cagacgtgac caaagggaag gtgaggacgc ccaaacgtac atcgctgacg       540
     tcataagctt ggccaaaaca tgcaattaca gagatttgga ggaggaactc ataagagatc       600
     gattagttgt tggaattcgt gatgaaaaat tgtcggaaaa tctacaaatg aatgacaaat       660
     tgacacttaa aacagcaatt gacaaaataa ctcaagtgga gaggattaga accgaaaaca       720
     gagaactaag agtgagagag gaaacggtaa acagagtagc tagagacaaa gccaagaaat       780
     ttaaccataa atccgtgaaa tatgaaggaa aacagcgcag gagcaaagat ggaaagcaac       840
     aaagtgaaca taaatttaaa ggttgtataa ggtgtggaaa ttcgaacaca cacaacagga       900
     tggaatgccc agccaatgga caaacgtgcc ataaatgtaa ctttaaaggc cattttgcat       960
     ccagatgtaa aacaaagaac gtaaacgcag tggaatctga aacctcaata tcagatgata      1020
     ctgatgatag ctatgattcg agctatgatt gtagggagat tatcaatatt aatcgagtaa      1080
     agttggacaa accttgggaa gcggtagcgg aaatttttaa tacaaacatt gtattcaaaa      1140
     tagataccgg agccgatgaa accataatat ctagcaaaga attcaaagat aaacttcagg      1200
     ggaaagtaaa gttacaaaga acaaaaacaa cactgttggg acccggaaaa ggaaaccaga      1260
     gaaaattgga aataaaggga gagatagtag ttcctcttaa atgggaaaat aagatagaaa      1320
     atgttagatg tttcgtcgtt gatacaccag ataacttact gggaagacca gccttacaaa      1380
     aactagacat gatcaaatgg actggcaaag aactcgttgc gagtgacagt gttattagac      1440
     atgtaactag cagaaaagct gatgaaaaat tccaacataa gatgatggtg aaatatccag      1500
     aggtgttcaa aggcttggga actcttaaga attttgagta cacaattgaa gtaaaatcag      1560
     acgcacaacc ttggacctta aacacgccta gaagaattcc actccccatg atggatgtag      1620
     taaaaaagga gctggacaag atgattcgcg aagacgttat agaagccatt aatgaaccta      1680
     ctgagtggtg tgcacctatg gttattgcag cgaaaaagaa cggaaaaatt cgcgtgtgtt      1740
     cagactacac cgagctaaac aagtgcgtta atcgcgaact gtaccaatta ccgtcggtcg      1800
     atgagacaat ttcgaaactg aaagacgcga agtggtttac caagttagac ttttccagtg      1860
     gcttttggca gcttaaactt tcaccgcaat cgcgcaaata tacctgtttt ctcacaccat      1920
     ttggcaggta tgtctacaaa cgcattccat ttgggatcac ctcagcacca gaagttttcc      1980
     aaaaaaccat cagcggcgta atcggcaaat taaaaatgga acacgtccat gttcatgctg      2040
     atgacatcct catcacaggc cgcaacgaag ctgaccatga cacaaacgtg aacaaagtgt      2100
     taacactctt atcggatcac ggcttgactt taaacaaatc caaatgtgaa tttaaaacga      2160
     acaagacctt atatttagga tacttaatat ccgaaaatgg tgttcaagcc gatcccaaaa      2220
     gcgttgaagc cattaataat tatcccgcgc catcgtcggt aaccgaagtt agaactttcc      2280
     tcggcatggt taactatgtc tcaaaattta tcgttaatac ttcggaaaaa aacccaatca      2340
     ttacgtgaac tactgcacaa ggataaacag tttgtatgga cagataaaca tcaagcggat      2400
     tttgaaaaac ttaaaagtga aatcgcatca tcgcgcgtgt tagccaagtt tagcacggac      2460
     aaaaaatcgc gagtgtcggc agacgcatcg tcttttggtt taggtgccgt tttagaacag      2520
     ttacaaagtg acggaaattg gaaacctact tatttttgtt cgcgtaccct cgaaccatgc      2580
     gagcaagcct atgctcaaat tgaaaaggaa gctctcgcca ttacatgggc gtgtgaaaga      2640
     ctcgaaaatt tcttactggg cgctcatttt gaaattcata ccgaccataa accgttaaca      2700
     gtaattttgg ccaccaaaga gctcaacaaa ctatccaaca ggctacaaag atttcgcatg      2760
     cggttattga aatttaacta tactatagaa tacgttccag gtaaaacgtt tttcgttccc      2820
     gatgcattat ccagagcacc aatccaaggc agaattcgac accaagaccc acttctagaa      2880
     gacattcaaa atctctacat caatttcgtg atgcgtgagg tcgttacaga aatttgttca      2940
     acggaagaaa tcaagtctta ccaaaacaag gacccaacgt acagcaaact caaagaatac      3000
     gtcaaaaatg gttggccaca gaaacacaaa agcgacccgt tagtcagtaa attcttctct      3060
     catcaacaag acttaagcat cgctcatgac attgtttgct acaaagaccg agtcgtcatt      3120
     cctggtcctc ttcagaagaa gtgcctctat gtgctccatg acggacactt cggtattaat      3180
     aaatgtttgg accgggccaa agctaccgtg tggtggccag gtatcacaag agagcttaaa      3240
     gaagtcgtcg ggaaatgtga aatttgcatc aaactacgca gaccaacggt agatcccatg      3300
     ttaccatccg aagttccatc tagaccgtgg caaacaattg gtgccgacct cgcagaatat      3360
     catgagtcaa cttacttagt ggtacaggac tattattcca agtatcctga aatcagaaaa      3420
     cttcgcacca ccaaagccaa agttgttatc gagaccttca aagaaatgtt tgctagacat      3480
     ggtatacccg aagttgtccg ctccgacaat ggcaaacaat ttgattgtca cgaatacaga      3540
     actttcagca gaaaatatgg atttaagtta attaccagta gtccccatta ccaacagtca      3600
     aatggacaag ccgaaagtgc tgtgaagctg ctcaaaacga tattgaggaa aaatgaagat      3660
     ccatatcttg cacttcttac ctaccgcaat acacctacta aatgtggatt gtcacctgcc      3720
     caactgctct ttggcagaaa ccttcgagac agactgccaa ggttaccttc agggttaaaa      3780
     cctgcaacta tcgaccatga cactgtcaga caaacgttaa tcaacaatca agcagaacag      3840
     aagtccaact acgacaaacg acaccgagta acaaaagaag agaaaaatct aaaagaaggt      3900
     gatcgcgtat ggatcataaa tatgcaaaag gagggagaag tacaacgcag atgtgaagaa      3960
     ccaaggtcat atttgatcga gactgacggc ggttgcgtca gacgaaatcg aagacatctt      4020
     cagcccttac cagacagaaa taatgaaccc gaacatgacc cagaacaacc agacgaatca      4080
     gaggaaccaa agaaaagacc aatcagaaga cccaaaagat accaagatta ttattgttat      4140
     tgaaatatgt atattttgat acctcaggta gttagtttca tatttagctt agttttgtat      4200
     ttaaaagggg gga                                                         4213
//
ID   Gypsy-3_TCa-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   ChLG4;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_TCa_;
KW   Gypsy-3_TCa-I; Gypsy-3_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-174
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG4; Positions 3677836 3677663.
XX
SQ   Sequence 174 BP; 45 A; 30 C; 52 G; 47 T; 0 other;
     tgttaggttg gcaactctca cgtgggcgac acgggagttg gaggggggtt tttttggcag        60
     agtgagttag ttaggttatg tcgcagaagg ggcctggacg caccctcaat gctccgggat       120
     attagtcaat aaacagttat aaggttgaat ggtctaatta caactaacct aaca             174
//
ID   Gypsy-3_TrNi-I repbase;    DNA;    INV; 5336 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5336
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 209-209 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           524..5068
FT                 /product="Gypsy-3_TrNi-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAYPIKFLSLQKSELEYEVAVRGETPANTVADLRRQI
FT                 CKLSQVFLSEDILCSHLDPLDDLNSCLEILNKIKSSLEVDTKDKNILGRIE
FT                 NLFHHLYHRLNRISRDDKFLDVHTECTSMFKEYYGALTSLKAKSIDPLITT
FT                 IPHSDPQVTTERLNISVTCEGNVKNCELAKLKYDGKSCVRAFIQRVSEFSV
FT                 ARNISNSKLLSFATEIFVDDALHWFRSVKQQVSSWDELIVLLQQDFDRADY
FT                 DYLLLSEIRSRTQGAKENITIYLSIISGMFSRLSRSFAEEDKLEIILHNIR
FT                 PCYASTLASASQITSIDQLRSLCRNYENVQSRMAQFREPAAPTSDTLAPEF
FT                 AYKQRTDIANKQNYNINNKFGNNKTNAENNNKQNLNNSVNEKYLHALNTSD
FT                 SIPGAKLPYCPRCRNNSHSLRDCQNKEIMCFKCGHKGIKKPDCPNCNKAQK
FT                 PKKLSMQNCLDSASLAGRFNKEDWENWLKTIKLFFNSYKMSSILHTKPLGD
FT                 LRPYLNIKINDITASGLLDSGSAITILGNNSHNTLVSRGLKLCTDDTPSIV
FT                 AAGGQILKSTGYINVPVHLEDQFHIIKSYVVPEVQSSLILGIDFWRAFQLC
FT                 PKYLGSVDLSNNSLVDLNSNNHQTFIQSYDSLDESQRSIADNVVEQFRDVS
FT                 FEVKGLGRTHLLSHRIDTGDSPPVRQRYYRLSPEKQKILVEQVDEMLKLDV
FT                 VEYCESAWQSPVLLVTKKNGQPRFCLDSRKLNSITKRDAYNLPYIAEILDN
FT                 LRDARFLSSLDLSKAFWQIPIAEEDRDKTAFYVPGRGTLRFKTTAFGLTNA
FT                 PATQQRLVDMLLGNIDHRIFAYLDDIIIVSNSFEEHVSLLLRVLDKLRKAG
FT                 LTVNLSKCEFFRSQLKYLGYVVDANGLRTDPEKVEAILNYPTPSNRKELKR
FT                 FLGTATWYRRFVPSFSTIAGPLNKLTSNKKNTPPFKWTDEAEIAFKKLKEC
FT                 LVSAPVLSCPDYNLPFEVHTDASNYGMGGMLTQSVNGKEHPIAYMSKSLTA
FT                 AEKNYSITERETLAVLVALEHWRCYLENGKKFTVYTDHSALKWFLSLNNPT
FT                 GRLARWGVRLSSFNFDIKHRRGVDNVIPDALSRAVPVAAMVTSNSSATSSD
FT                 AWYTNIYNNCVTKPENFPNYQIKDGTLFRLSKNKCLLTNEFSWKEVVPSEY
FT                 REKVIADNHDEPTAGHLGIFKTYRRVALSYYWPGMHRDIAKYVGSCNTCLQ
FT                 YKTQNHATLGEMGRPKQCSRPYQMISVDLMGPLPVTRKQNSYILVVTCCFS
FT                 KFCHIFPIKKATSQIIVKLMEEHIFLVHGVPQSIFLDNGTQFISGHTQDLF
FT                 KKYKIPNVFFSPKYTPQVNTVERYNKTIITCISTFVDGDHRTWDLFIPKVQ
FT                 FAINNSVNEATGFTPSFLVFGREIVLCGAHYTDTDLGDEVLFLPRDVYAEN
FT                 LGCLSSIFDQVQKSLHHAHVKNTSYYNLRRKAFEFNIGDVVYKRAYVLSDK
FT                 DKHFSKKLAPKYIKCRVIQKLSPLVYVLEDMSGKNLGSWHIKDLKIPTYK"
XX
SQ   Sequence 5336 BP; 1599 A; 1006 C; 1065 G; 1666 T; 0 other;
     ctggcgccca attacgtggt tttgtctgtt ctcgcttctg tagttagtag ttagttattg        60
     tacggtgagt gggtaatttt atttttttta ttttgtaaaa cgctttgtgt gtttgtttgc       120
     atcaactgga gtgaagtctt ataatctcat catttccgtt attttagtat attgtgttaa       180
     cgttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaactcata tacagggtgt tttttttata       240
     caggctgttc aatttttttt ataatattgc tatcagccgt ggtaaaattt gaatcgtgct       300
     gtttttttcc aattctttgc ataaccttca caccagttgc aaaaattgtt ttgtctgctt       360
     ttgttcgcaa ttttttgttt ctttctttct gttacttctt acttacacag cgttctgtta       420
     aagtagatta taacggaacg gagtattttt tttctttcca taaaattttg tgtgctattt       480
     acaactttct cccattttga tttttttttt acccgtattt aaaatggcat accctattaa       540
     gtttctatca ttacaaaagt cggaattaga atacgaggta gccgtacgag gtgaaacccc       600
     agctaatact gtggcggatc ttagacggca gatctgtaag ctcagccaag tttttttgtc       660
     tgaggatatt ttgtgttccc accttgaccc tcttgatgac ctaaatagtt gtctggaaat       720
     tttaaataaa attaagtcta gccttgaggt ggataccaag gacaagaata ttttggggag       780
     aatcgaaaat cttttccatc atctttatca tagactgaac aggataagta gggatgataa       840
     attcttggac gtgcatacgg aatgtacaag tatgtttaaa gaatattatg gagctttaac       900
     atctttaaaa gcgaaaagta tagaccccct cattactacc atcccgcatt ctgatccgca       960
     agttacaact gagagattaa acatttcagt gacttgcgaa ggaaatgtta aaaattgcga      1020
     attagcgaaa ctaaaatatg acggcaagtc ttgcgtacgt gcttttattc agcgagtcag      1080
     cgaatttagt gtagctcgta atatttcgaa ttcaaaatta ctatcattcg ctacggaaat      1140
     ctttgtggac gatgcacttc attggtttag aagcgtaaag caacaggttt cttcttggga      1200
     tgaacttatt gtccttctgc aacaggactt cgacagagcg gattacgatt accttctgct      1260
     gtctgagatt cgatctagga ctcagggagc aaaggaaaac attaccatct acctatcgat      1320
     tatttcagga atgttttcac gcttgtcgag atcttttgca gaggaggata agttagaaat      1380
     aatattgcac aacattagac cgtgttacgc gagcactctg gcctcggcat ctcagatcac      1440
     atcgattgac cagttaagaa gtctttgtag gaactacgaa aacgtgcaat cacgcatggc      1500
     acagtttcgc gaacctgccg ctcctacttc tgacacgtta gcacctgagt tcgcatacaa      1560
     acaaagaacc gatatagcta acaaacaaaa ctataatatt aacaataagt ttgggaacaa      1620
     caaaacaaat gcagaaaata ataataaaca aaatttaaat aacagtgtaa atgaaaaata      1680
     tttacatgcc ctaaatacta gtgattccat ccccggggca aaattgccgt attgtcctag      1740
     atgccgtaat aattcgcata gcctgaggga ttgtcagaat aaagaaatta tgtgttttaa      1800
     gtgtggtcac aaaggtatca agaaaccaga ttgccccaat tgtaacaaag ctcaaaaacc      1860
     aaaaaaacta agtatgcaga attgtctcga ctcagcctcg ttagcaggtc gctttaataa      1920
     agaggattgg gaaaattggt tgaaaacaat taaattgttc ttcaacagtt acaaaatgtc      1980
     ttcaattctg catactaagc ctttgggcga tttgcgacca tatctgaata ttaaaattaa      2040
     cgatattaca gcgtccggcc tcctggattc cgggtcagct attacaatat taggaaataa      2100
     ttctcataac accctagtca gtcgtggcct taagctatgt actgatgata caccttcgat      2160
     agtagctgca ggtggtcaga tacttaagag tactggctat ataaatgtgc cagtgcattt      2220
     agaggaccaa tttcatataa ttaagtcata cgtagttcca gaagttcaat catcgcttat      2280
     tttaggtatt gacttctggc gcgcctttca attgtgtccg aaatatttgg gttccgtaga      2340
     tttgtcaaat aattcattag tagatttaaa tagtaataat caccaaactt tcatacagtc      2400
     ttatgatagc ttagatgagt ctcaacgctc tattgctgat aacgttgttg agcaatttag      2460
     ggacgtttca tttgaggtta aaggcttagg ccgtacacac cttttatccc atcgcatcga      2520
     tactggcgat tctcctccgg tccgacaaag atattatagg ctctcacctg agaagcagaa      2580
     gatccttgtc gaacaggtgg acgagatgtt gaaactagat gtggtggagt actgcgaaag      2640
     cgcgtggcag tctccggtac tcctcgttac taaaaagaat ggacagcctc gtttttgtct      2700
     agatagcaga aagttaaatt caataacaaa acgagatgct tataacctgc catacattgc      2760
     cgagattttg gataatctgc gcgacgcccg ttttctttct agtctggatt tatccaaagc      2820
     cttctggcaa attccgattg cagaggagga tagagataag acggctttct acgttccagg      2880
     tcgaggaact cttcgattta aaaccacggc ttttggtttg acaaatgctc ccgctacgca      2940
     acagcgtctt gtagatatgc tactaggtaa catagatcat cgcatatttg cttatctaga      3000
     tgatattatt attgttagta atagttttga ggagcatgtg tcccttctac ttcgcgtttt      3060
     agacaaatta cgtaaagcgg gccttactgt aaacttgagt aagtgtgagt tctttcgaag      3120
     tcaacttaag tatttaggtt acgtagttga tgcgaatggg ctgcgaaccg atccagaaaa      3180
     ggttgaagct atccttaact accctacccc tagtaatcgc aaggagctga agcgatttct      3240
     gggcacggca acttggtatc gtaggttcgt tcccagtttt agtacaattg cagggccgct      3300
     caacaagctg acttcaaaca aaaagaacac tccacctttc aagtggactg atgaggcgga      3360
     aatcgctttt aaaaaactaa aagaatgctt agtttctgca cctgttcttt cttgccccga      3420
     ttacaatctt ccttttgagg tgcatacgga tgcaagtaac tatgggatgg gcggtatgct      3480
     cacgcaatct gtaaacggaa aggagcaccc tatagcttac atgagcaaat cattaacggc      3540
     ggcagaaaag aactatagca taacggagcg ggagacgctg gctgttcttg tggcattgga      3600
     gcattggcga tgctatttgg aaaatgggaa gaagttcacc gtgtacacag atcatagtgc      3660
     gttaaagtgg tttctttctc ttaataatcc tacgggaagg ctcgcacgtt ggggtgtgcg      3720
     tttatcttca tttaattttg atataaagca ccgtcggggt gtcgacaacg tcattcccga      3780
     tgcgttgtca agagcagtac ctgttgctgc tatggtcact tctaattcat ccgcgacttc      3840
     cagtgatgct tggtatacta acatttataa taactgtgtc acgaaacctg agaattttcc      3900
     caattatcaa attaaggatg gcactctctt ccgccttagt aagaataaat gcttgcttac      3960
     taatgaattt tcttggaagg aagttgttcc ctccgagtac agggaaaagg tgattgcgga      4020
     taatcacgac gaaccaaccg caggtcattt gggcattttt aaaacctaca ggcgcgttgc      4080
     tcttagttat tactggccgg gtatgcatcg agatatagcg aaatacgttg gttcttgcaa      4140
     cacttgttta cagtacaaaa ctcaaaacca tgctactcta ggtgaaatgg gacgtcctaa      4200
     gcaatgctcg cgcccgtacc aaatgatttc tgtcgactta atgggaccac ttcctgtcac      4260
     acgaaaacaa aatagctaca tactagtagt gacctgctgt ttttccaaat tttgtcatat      4320
     ttttccaatt aaaaaagcta cttctcagat tattgttaaa cttatggaag aacacatatt      4380
     ccttgttcac ggtgttcctc aaagtatttt cctggataat ggtacccaat ttattagcgg      4440
     acacactcaa gacttgttta agaagtataa aataccgaac gtattctttt cacccaaata      4500
     taccccccaa gttaacaccg tggagcggta caataaaacg ataatcacct gcatttccac      4560
     tttcgtggac ggtgatcatc gaacatggga cttatttatt ccaaaagtac aatttgcaat      4620
     aaataattcg gttaacgaag ccaccggatt tacaccttca tttctagttt ttggacgaga      4680
     aatagtttta tgtggtgcgc attatacaga tacagacttg ggtgacgagg ttttgtttct      4740
     tcctcgcgat gtatacgcgg agaaccttgg atgcctaagt tcaatctttg atcaagtcca      4800
     aaaatccttg catcacgcac atgtcaaaaa tacatcatat tataatttaa gacgtaaagc      4860
     tttcgaattt aatattggtg atgtagtata caaacgtgct tacgtcctga gcgataagga      4920
     taagcacttt agcaagaaat tagctcccaa atacattaag tgccgggtca ttcaaaagct      4980
     atcaccacta gtgtatgttt tggaggatat gtctggtaaa aatttagggt cttggcatat      5040
     taaggactta aaaattccta cctacaaatg aatgtgatct ttgttacgtt tccccttaca      5100
     ctattaaacg atattaagac ctgttaccaa agtcaatgac gaatatatta gtcgtttgat      5160
     tttttttgta tgttaggaca cgtcgcacaa ttttaatatt gtgtgttgtt tattatgact      5220
     ggttttgaga gatgagggaa tgattgaagt gaatgtatga ataaaaggat atcgtaacga      5280
     gtttatcatg cggattttat tcttaaaata aaatccttat gagggaccgg gggtaa          5336
//
ID   Gypsy-3_TrNi-LTR repbase;    DNA;    INV; 1353 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-1353
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 248-248 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1353 BP; 395 A; 278 C; 249 G; 431 T; 0 other;
     tgtaacggaa cgttacatga ataatcatgt tttgtttcta caaattataa attgaactac        60
     ctacatattg ttcatattat agttggcagc ggtgggtata tttattaaat tctaactaat       120
     acataaaaca aaacatagaa aaaaaatata taataataat aatattaaaa taaataaaat       180
     caattataac tgtgcaaaac ttaattaata aaaataaaat aacaacatga aaatgaatgc       240
     attgttcttt gtttacgcgt gttttggaac gcgccgaatg aaccgaacga accaagaatg       300
     agttcgattg agggagatgg gacatactgg ccagtcgctc ctaggctgat gcgagcgtgt       360
     tacctctgac cactttccgt cctgtcaagc gtcctagcag acacggccgt taaattcaaa       420
     tttaaaaaaa aaataagttg agagtgttca agttgaatac ttgcacttaa tattgttgtg       480
     aagatcccga attagggtaa gttttaaata gcacacaatt cacccatctt gatcatatag       540
     ttgtttgtta tatgtttctt tttatttgca gcttattatg ttctatgtgc cactgtacct       600
     ttgtcttgct ttgccactcg tttgttactg tgctgtgtta ctcgctttat gttgcttaat       660
     tcaccaagct aatgagctaa cactatttaa gtaaagtagt agtttcaaat aaaattattg       720
     cttcaatcta cctgcaagta aaataatatt ttttattcaa aatttaaata tctcaacggc       780
     cataaccgta attttatgtt tgtatttttt tttccgttaa actgctttat gtgtaaactc       840
     cgttctgggt agtaccgcca cgtcaatact actacattta gataggcatc gcttcctcgt       900
     tgtcgacggt ggtactccag cacggaattt attaggccga gttctgatta gctcgaacgg       960
     tgatttccag gttttttctt ccggctttaa ggagccagca gcatcctcgc gttcgggcct      1020
     gcctaccaac cgaggtcatc cgaggagccc gcttccggca acaccagtcg cacgtgcgcg      1080
     ccatctccat caccggtgaa gtcaccgtac agctcagcac tgaacctcgg cctacttcca      1140
     tctccggcca gcggcggaat cccgccacaa ctacaggggg gtacctatcc ctgcagaggt      1200
     gactacagac aaagttgtaa tccacgaccc ataaatcttc gtgtgcctcc ggctgtgttt      1260
     tttttttata taatataaat tttgaaggta cacacccgtt ttattttttt attaatcacc      1320
     tacctaggtg ggaataaacg ggtggaggtt aca                                   1353
//
ID   Gypsy-3_TrVa-I repbase;    DNA;    INV; 5023 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5023
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 249-249 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..1077
FT                 /product="Gypsy-3_TrVa-I_1p"
FT                 /translation="MIHSPVKQNRRITRASTMPADDTAKTVATLEEMKNAF
FT                 SHVKQRNKVLEQQLMAMQAQVQKLEDQSASTTQLTDRQPTISNFDHSNNIQ
FT                 LPSFIPDRPDLWFSQIEALFSIHRIDSEIAKYGHVVGKIEGRWAREIADLI
FT                 SSPPPTDPYTTIKNALIERLSESDVSKVRQLLSDVDLGDQTPSQFLRHLQS
FT                 LSGKAAVHDNLVKTLWLQRLPNLVQTILQGQPDTVPIIQLAKIADRILETM
FT                 LVPSHANRNPSAVYSTASNGPPEDQNNMAKTLDMILTRLENLEKQNNYFRS
FT                 RSRSKTPNSRFRNRSNSRSFNNNNNGLCYYHDKFGNEARRCSQPCNFAKNA
FT                 QGSQ"
FT   CDS           4155..4940
FT                 /product="Gypsy-3_TrVa-I_3p"
FT                 /translation="FPIYNKKTNYSTHSILPGATMSNAYNSRPSDKTILKR
FT                 IFASSKILSPPRRIEPPKMLAWPVPFSSTYCKYRHSLESTSPTLPPSVDLS
FT                 PQKTYQQIASSSLLATQTSNYAAQFNLKCTPAQLACCNYWSWHLNKNKLTT
FT                 PGPANCSVRIKSRPHHFSVYSDQLHLVPPQILDHAPPMIQVIIKPGHHPKL
FT                 CDTCRKCKNLCICFHNFADSCTHTACPCRNKIELKLPVLLTNQIFLKTACE
FT                 NNRHYAEQTIKNIEAMHPTEF"
FT   CDS           1038..4151
FT                 /product="Gypsy-3_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SAMQFCKKCTRQPVKAATSCHNQKSDRLFIVDKILGQ
FT                 KFLIDTGSDICCFPRKLLHEKFKATNYQLNAANGTSIHTYGFLPLTLNLGL
FT                 RRAFTWRFVIADVATPIIGSDFLAKFHLLPDCRNNLLIDGVTNLKSAGLTA
FT                 NTVQPSVTAITLSDCSLLNEFPELTRPCGTPRKLLHSTQHFIRTTDGPPVT
FT                 SRPRRLRPDRYRIAKAEFEAMLQEGTIRRSESSWSSPLHLVPKKENNWRPC
FT                 GDYRALNARTAHDEYPIRHIHDFTQNLKGCTVFSKIDLVKAYTQIPVNPDD
FT                 IPKTAITTPFGLFEFLYMSFGLRNAGQTFQRFIDEVLHGLDFCFPYIDDIL
FT                 IASKNKEEHEAHLRTIFQRLVEHGILININKSSFFQKSVIFLGYEVSAKGT
FT                 SAPKDRVTSLTSFTQPSTARGLKRFLGMINYFRKFLPNAAEYQADLNTAVA
FT                 GLKGNQPIHWTPELSESFKKCKESLSQATLLAHPDPEATLGLFTDASGTSI
FT                 GASLQQCVKDDWEPLAFFSRKLTPRQRDWPPYYRELYAVYAAIQHFRHSLE
FT                 GLNFAIYTDHKPLVFAFKQKKDKLPPVQINHLSYIAQFSTDIRYISGPSNV
FT                 VADALSRIETISTPEAIDFKSLAEAQTNDKELGELLTSENSLQLEQVKVPG
FT                 TSIKIFCDKSENKRPYIPLLFRRQIFNQVHDLSHPGIKATAKLLTSRFVWP
FT                 SIQRDCRDWARSCQACQKAKVTRHVHSPLGTIPTPTERFKHIHIDLIGPLP
FT                 SADSYRYCLTAIDRFTRWPETQPLYGITAKEVAEALLLCWISRFGCPATIS
FT                 TDQGRQFESNLFLELGKIMGTKRNRTTSYHPCSNGMIERFHRQLKGALMCH
FT                 PGLSWVQALPLVMLGIRTSFKEDLKTSSAELVYGEPLRIPGEFLTAPPKNI
FT                 ANPSDFVIQLRNQMNVLRPVAGTRHAQTNPFVFKDLATCTHVFLRDDTVRG
FT                 SLVPPYTGPHHITAKDDKCFTIIVNGKERKVSLDRLKPAYILNVPPDITPT
FT                 NNLKTKVANSPTYTTRYGRQVKFIIPRTVKVN"
XX
SQ   Sequence 5023 BP; 1542 A; 1326 C; 874 G; 1281 T; 0 other;
     attggtgacc tcgacgtgat ctgatttccc caggatatga tccattcgcc agtcaagcag        60
     aacagaagaa ttacaagagc atcaaccatg ccagcagatg ataccgcaaa aaccgtcgcc       120
     acactggaag agatgaaaaa tgctttcagt cacgtgaagc agcgcaacaa agttctcgag       180
     cagcaactga tggctatgca agcccaagtg caaaagctcg aggatcaaag cgctagcaca       240
     actcaactca ctgaccgtca gccaaccatt tctaacttcg accattcgaa taatatacaa       300
     ttaccctctt tcattcctga cagacctgac ttgtggtttt cacaaattga ggctcttttt       360
     tccattcatc gtatcgattc cgaaattgcc aaatatggcc atgttgtcgg taaaatcgaa       420
     ggacgctggg cgcgagagat tgcagactta atctcttcac caccacccac agacccttat       480
     actactatta aaaacgcact tatcgaacgt ttgtcggaaa gtgacgtttc caaagtccga       540
     caacttttgt cagacgttga cttgggcgat caaacaccgt cccaattttt gcgccattta       600
     caaagccttt ctggtaaagc tgctgtacac gacaacctag tgaaaacact atggcttcaa       660
     cggttaccta acctagtgca gactatactg caaggtcaac cagacacagt tcctattatc       720
     caacttgcta aaatagctga ccggatctta gaaaccatgc tagtaccatc tcatgccaac       780
     cgcaatcctt ccgcagttta ttcaacggca tctaacggtc cacccgaaga tcagaacaat       840
     atggcaaaaa ctcttgacat gatcttaact cgcttagaaa atttagagaa acagaataat       900
     tactttcgtt ctagatctcg tagcaaaacg cctaactctc gttttagaaa caggtcaaat       960
     tcgcgatcat tcaacaataa taataacgga ctttgttact accatgacaa atttggcaac      1020
     gaggcgagac gttgtagtca gccatgcaat tttgcaaaaa atgcacaagg cagccagtaa      1080
     aggcggcgac tagctgccac aaccaaaagt cagaccgtct attcatagta gacaaaatct      1140
     taggtcaaaa atttttaatc gacactggct ccgatatttg ttgttttccg cgcaaactat      1200
     tgcacgaaaa attcaaggcc actaactacc agcttaatgc ggcaaacggc acaagcattc      1260
     acacctatgg gttcctacct ttaactctaa atttaggact cagacgcgct ttcacatggc      1320
     gattcgtcat tgctgatgtt gccacgccca ttatcggctc agactttctc gcaaaattcc      1380
     atttattgcc tgattgtcgg aacaatttgc tcatagatgg cgtgacaaat ctcaaatctg      1440
     ccggcctaac agcaaatact gtgcaaccta gtgtcacagc gattactttg tcggattgta      1500
     gcttgctaaa cgagttccct gagcttactc gaccttgcgg tacgcctcgg aaattgcttc      1560
     attcgacaca acattttatt agaacaacag acggtccacc agtcaccagc cgacctcgtc      1620
     gccttcggcc cgacagatac cgcattgcaa aagcggaatt tgaagccatg ttacaagaag      1680
     gaactataag aaggtcagag agttcatggt cttctccttt acaccttgtt cccaaaaaag      1740
     aaaacaactg gcgcccatgc ggagactaca gagctctaaa cgcgagaact gcacatgacg      1800
     aatatcccat acgtcacatt catgatttta cgcaaaatct aaaaggatgc accgtatttt      1860
     ctaaaatcga cctggtaaaa gcgtacactc agatacccgt caaccctgac gacataccca      1920
     aaaccgctat taccacccct tttggacttt ttgaattttt atacatgagt ttcggattac      1980
     ggaatgcggg tcaaacattc cagcgcttca ttgatgaagt cctacacgga ctggactttt      2040
     gttttcccta tatagacgac attcttatcg cgtctaaaaa caaagaagag catgaagcac      2100
     atcttaggac aatattccaa cgcctagttg aacatggaat tctaatcaac atcaataaaa      2160
     gctctttctt ccaaaaatca gtaattttct tagggtacga agtttctgcc aaaggcacta      2220
     gtgcaccaaa agatcgagtg acatccctca cttcttttac tcaacctagt actgctcgag      2280
     gtctcaagag atttctaggt atgataaatt actttagaaa atttctacct aacgccgctg      2340
     aataccaggc tgacctcaac acagcagtgg ccggtctcaa gggcaatcaa ccgattcatt      2400
     ggactccaga actatccgaa tcgttcaaaa aatgcaaaga aagtctatct caggcaacac      2460
     tattagccca ccctgacccg gaagctacct taggtctttt caccgatgcc tctggcactt      2520
     ccattggtgc aagtttacaa caatgtgtaa aagacgattg ggaaccactt gctttctttt      2580
     ctcgaaaact gacacccaga cagcgtgatt ggccaccgta ttacagagaa ctctacgctg      2640
     tatacgccgc cattcagcat tttagacact cacttgaagg tctaaatttt gcgatctaca      2700
     cagatcacaa accgttagtg ttcgctttca aacagaaaaa agacaaactt ccaccggttc      2760
     aaattaacca tttgtcatac attgcgcaat tctcaacgga catcagatac atatccggtc      2820
     cttctaatgt cgtcgccgat gctctctcga gaattgagac catctccact ccagaggcca      2880
     tcgatttcaa atcactcgcc gaagcgcaga caaatgacaa agaacttgga gaacttctaa      2940
     cctctgaaaa ttcgcttcaa cttgagcaag taaaagttcc aggaacgtca attaaaatat      3000
     tttgcgacaa atccgaaaac aaaaggccat acatcccatt attattccgc cgccaaattt      3060
     tcaatcaagt acacgacctc agtcaccctg gaatcaaagc cacagcaaaa ctgttaacat      3120
     ctcgtttcgt ttggcctagc attcaaagag actgcaggga ttgggctcga tcatgccaag      3180
     cttgtcagaa agcaaaagtt acccgccatg tccactctcc tctaggaacc attcctacac      3240
     caacagagag attcaaacat atccatatag acctcatagg cccccttcct tcagccgatt      3300
     cttaccgcta ttgccttaca gcaatcgaca ggttcacacg ctggcctgaa actcaacctt      3360
     tatatggcat cacggccaag gaagttgcgg aagctctgtt gttatgttgg atttccaggt      3420
     tcggatgccc tgccaccatc tcgaccgatc aaggacgaca attcgagtca aatctattcc      3480
     tggaactcgg caaaattatg ggcactaagc gaaaccgcac cactagctat catccatgtt      3540
     ctaatggcat gatagaaagg ttccatagac aactgaaagg cgccctcatg tgccaccctg      3600
     gtctatcatg ggttcaggcc ctacctttag tcatgctcgg aattcgcaca tctttcaagg      3660
     aagacctcaa aacttcgtcg gcagagcttg tttatggaga gccactccgc atacctggtg      3720
     aattcttaac ggctccccca aaaaatattg caaatccttc agatttcgtc atccaactcc      3780
     gtaaccaaat gaacgttctc cgaccagttg ctggcacacg ccatgcccaa acaaatccat      3840
     ttgtattcaa ggaccttgcc acttgtaccc atgtgttttt gagggacgac actgtaagag      3900
     gctctctcgt cccaccatat actggcccac atcacattac ggcaaaagac gacaaatgtt      3960
     tcactatcat agtaaacgga aaggagagaa aagtgagcct ggacaggtta aaaccggcgt      4020
     acattttaaa tgtcccgcca gatatcactc ctaccaacaa cttaaaaacg aaggttgcca      4080
     attctccaac ttacacaact cggtatggca gacaagtaaa atttattatc cctcgaaccg      4140
     tcaaggtcaa ctaatttcct atatataaca aaaaaaccaa ttattctact cattcaattc      4200
     ttcctggtgc tacaatgtca aacgcttaca attcacgtcc atctgacaaa accatattaa      4260
     agcgaatttt tgcctcaagc aaaattctct cccccccaag aagaattgaa cctcccaaaa      4320
     tgttggcatg gcctgttcct ttttcgtcta cctattgcaa atatagacac tctttagagt      4380
     cgacttcccc aacacttccc ccttctgtcg atttatcccc ccagaaaacc taccaacaga      4440
     ttgctagctc atctttactt gcaacgcaga ccagcaatta cgcagctcaa ttcaatctca      4500
     aatgcacacc tgcccaactc gcgtgttgca attactggag ttggcacctc aacaaaaaca      4560
     aattaacaac acctggacca gcaaattgtt ctgttcggat caaatcaagg ccgcaccatt      4620
     tttctgtcta ttcagaccaa cttcaccttg tcccacctca aatactcgat catgcacctc      4680
     ctatgataca agtcataatc aaaccgggac accatccgaa actttgtgat acatgcagaa      4740
     aatgcaaaaa cctgtgcata tgcttccaca acttcgccga ttcttgtacc cacacggcat      4800
     gtccttgccg aaataaaata gaattaaaac taccggttct attaacaaac caaatttttc      4860
     ttaaaacagc gtgcgaaaac aatagacatt atgccgaaca aacaataaaa aatatcgaag      4920
     ccatgcatcc tactgaattc tagtccttgt ttttctaaca tgtttttgtc cacagttcct      4980
     tttatagcct gaggcctgac tccgtcactt cgcagggggc tac                        5023
//
ID   Gypsy-3_TrVa-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-3_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-328
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 232-232 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 328 BP; 70 A; 118 C; 72 G; 68 T; 0 other;
     tgtggcggcc tcgcccgcac gacctcgcta gcagcgccac tgccggcgca actttgaact        60
     ttcacacatc agctcgcgca ctccagcgac ttcactttct ctcgtcgctg attggcgcgc       120
     gagctagcag cggttccata caaatagcag cgcccgctgc ccactgattc agtatgctgc       180
     tcggaatcaa gacccgtcgg acaattagcc acgctgccca gatcacggaa tcaacacaat       240
     ctacttcctc agctcacgtc cggcgtgacg tctcaccttt agaaaacggc ccttttcagg       300
     gccaccacga tctttccgag cacctaca                                          328
//
ID   Gypsy-400_AA-I repbase;    DNA;    INV; 8248 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-400_;
KW   Gypsy-400_AA-I; Gypsy-400_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8248
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8248
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 126-126 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 8248 BP; 2504 A; 1477 C; 2003 G; 2264 T; 0 other;
     aattggcgcc caactgaaag gtcttattag ttatatatgt tacgtttatg gagcaaattt        60
     gaagtattgt tcatgtggtt caaatttatg ttaatgtgga gaattttgag taaagtttat       120
     gtgaattttc ggaattttcg taaaatctga aaataagatt atgttatagt tgtaattttg       180
     tgtatttctg tagttttctg gagaaatatt gttgagtttc tgtggtttac gtatagtttg       240
     ttgaaattac tttaaaaaaa aaatttaaca aaaaacagta gaacggataa ttctagtcgg       300
     taacaaaata ttattataat tcatttgtac tgttcggcaa atttcgttga aatggctcat       360
     aaattcccta gagcagatca tttgacgaat gaggaggtgg actacgaact ggttcttaga       420
     aatagggaag cggatacaag aagtgatctg gattctaaac agaggttgct aaggaatttg       480
     ttctttgtgg atgcgaagga gggtgcggag tatggattta aaggcactgt tgaccaaatg       540
     tttgatttca ttctgggtaa ggttgaagca attgggaaac agttggagaa aggtctggat       600
     gacaagagtt tttctcgtct tagacattat gcgcttagag ttgaacgctt gcaagctaaa       660
     ggctcgcaag cagaaaagct taaggatcac ctttcaagcg aaattaatgg tttattggac       720
     aaatttaata gtaagaaacc ttctgatgac aaaaacggga aaaagatcgg agtagatgaa       780
     cagaataaaa gaagtaacgc aggtttgagg ggaatagagg agttactgaa tgcagaaaag       840
     gacaaatata aggataaagg tgcggagtcg ttggatttga tgaaacagaa tgaggaaatt       900
     acacaacgcg aaaacgaagc ggaggaaaat gttgaaacaa agttaagaac cgaattggaa       960
     gaacagaaaa cattatatga gcaaagaatt aaagaattag aagctaaact ggaaagggta      1020
     tgtaaaatag tagaagaacg aaacatttca ggacaagaaa acttggcacc gcaaacatca      1080
     gaatacggaa caagaaattc accagttgtg aataccagga taagcaatat acgcgacgaa      1140
     caacttgaaa ggactggaca gacgggacag gaagtggcta acatggaata tcgggatcgg      1200
     tacactcgaa ggcaaggcga aaatgagaga gtggaatacc aaaattttcg ccaagaagaa      1260
     gacttaccat cttggcagag atctgcgcca gcgtaccgag cggaatacga gagagaaagg      1320
     atagaggagc aagatgaacg aagagctgct tttccatatt cccatgtgtg cggaggagta      1380
     aggcgactcg atgaccagcg aagggatgag ttctcacggc ttgacaatag gcaacgacag      1440
     tatgcaccag tgcagcgaca tgaggatgta ggaagtattc cagaggattt cgggagagat      1500
     aatcgagatt atcagccagg agcacgactg gcaaatcgtt atgcgagatc ggacgatttc      1560
     gaaaatggat cgaggggaag ccgttcgaat cagcggaata tagaaggaga gataattaac      1620
     gccgacagac gaatggaaaa gtggcatctc accttcagtg gggatagtcg tcagagatcc      1680
     ttggaggact tcctccacaa agtgcgtcgg ttagccagaa tggacagaat ttccgatggt      1740
     attttgttgc agcgaatcca tacaatactg agaggcgaag cgtatgattg gtacctctgt      1800
     tacgcagacg aattccttga ttgggcggat tttgaagaaa ggattcgtta catgtatgga      1860
     aatcccaaca aggaccaggg aaataggcag aagatttacg agaggaaaca gcaacgaaac      1920
     gaaacctttc tgacattcaa gatggaggta gaacgactga acaaactttt aagctctccc      1980
     ttggatcaga gtcgactgtt tgaaataatc tgggacaaca tgcgtcccca ttacaggtcg      2040
     cgattggcat gtagaactgt gagggatctt cggatgttgg agtattatgc ataccgcatt      2100
     gatgcaaacg atccaacgtt tagaagccac cgtgaaggac acaataagtc agccggtaat      2160
     ctgcataata ttgaagcaga aaatgaatca agcgatacac aatcgttgta ctccgattcg      2220
     gaggaggtga acgctgtgga gaggaagttc aacagggata ggagaccaag agatgatcgg      2280
     agacaaccgg acagaagagt atcagagacg tcagcacaac cgcaagtcgc tcaagaggcc      2340
     tcaagagaag ctacgcgtat gctgtgttgg aactgtggta aaacagggca catgtggagg      2400
     tattgcagag aagaaaagcg aatcttctgc tacgtgtgtg gaactccggg aaagacatca      2460
     gtaaattgcc caaaccaccc gagatcgtct cagcatgtga tgtcgggaaa ctagaggggg      2520
     aatgtaaaaa tgggaacgac agcattccaa cctctaagac agttcccgta tccgaaagaa      2580
     tatatgttga agaagcagga ctgtgcgaag taagtgcaac ggcggagaga tgtccacata      2640
     tctgtgtgcg gatcttcggt acagattacg atgctttatt ggactcagga gctagtgtca      2700
     gcgtcactag tgtcagtgac atcgcggaac gcaacggtct tacgatgaag gaaagtccgt      2760
     tacgaatagt gacagccgac aaaacagtcc ataagagtct tgggtacgtc cagcttccga      2820
     ttgagttcaa tggtgttacg aaggtagttc cagttctagt ggtaccgcag atatgcagga      2880
     aaatgatcct agggtacaac ttctggaaag cttttggtat tcaaccgatg atggagggag      2940
     cacaggggct ggaaaaagtt gctactttga acagagacag tgtcgcggag ctagaggtca      3000
     tcgacttcac aattctgcca attcaggcgt ttccggagat caggaagaca gaaccagatg      3060
     agacgttgga catcccggca cttgaattac ctgaaccatc gaaaacgaca ccggaaacag      3120
     tagagactga gcacgaactg ttaccggagg aacgagcgga gttaaccgaa gccataagac      3180
     tgtttccgtg caccacagaa aatcggttgg gaagaacttc tcttatccag catgaaattg      3240
     tactcagtga agaagcaaaa ccacgtaggc aaccattgta tagatgttct ccggctattc      3300
     aggctgagat ggaagccgag attgagcggt acaagaaaat ggacgccatc gaagaatgtt      3360
     ctagcgagtg ggctagtgcg ctagttccgg ttaggaagtc caatggcaaa ctccgagttt      3420
     gcctcgactc tcgaaagatc aactcctgga ccaaaaagga ttcatatcct atgaggaaca      3480
     tgggggagat ctttcataga ctggggaaag ccaaatacta ttcagtagta gacctgaagg      3540
     acgcgtattt ccagattccc ttgaaggagg aatctaggga ctatacggcg ttccgaactc      3600
     ctcagggttt gttcaggttc aaggtttgtc cctttggact gacaaacgct ccatttacaa      3660
     tgtgtcgtct aatggaccgc gtaattggct tcgatcttga gccgtacgtg tttgtctatt      3720
     tggacgacat tgtaattgcg actagaacgt ttagcgagca cgtcaaactc ctaaagattg      3780
     tggcacaacg tttagctaac gcaaatctta cgatttcgtt agacaagagc agattttgtc      3840
     gcaaaaaggt ctcgtatctg ggctatttgc tgacagagga tggagtttcg attgataact      3900
     ctcgcatcga acccatccta aattacgtac gcccaaagaa cataaaggat atacgacgac      3960
     tactcggatt agccggtttt taccagcgtt ttatacgcga gtacagtagg attgttgcgc      4020
     cgatttctga tctcctaaag aagtctaaga aaaagttttg ctggactgag gaggcagaga      4080
     aggccttcgg agacctaaaa ggagcactcg tatcggcacc catccttggt aatccggact      4140
     ttacgaagca gttcacgatc gagtctgacg cttcggacaa cgcagtgggt gcggcgttgg      4200
     tacaagactt cgaaggacag ccgaaggtga tagcgtactt cagtaagaag ttgagcagta      4260
     cccaacggaa gtatgccagc gtcgagaagg agtgtttggg agtcttgttg gcgatccaga      4320
     acttccgcca ctatgtggaa ggaacgagat ttaaggtcgt aacggacgct cgtagtttgt      4380
     tgtggctctt tacgattggt gtcgagtcgg ggaacgccaa gctactccga tgggcgttga      4440
     agatccagtc ttacgatata gaactggaat atcggaaggg aaggaacaac atcgtcgcag      4500
     attgtctgtc aaggtcggtg gaatccttaa atgcgatagc tgacgatgag aactaccaag      4560
     aaatggcgtc ggcaatattg aaaaaccctg caggctttcc agattatcgt gtggttgatg      4620
     ggcaggtgct aaggtacatc aaggacgctg gaaaggttga ggatccacga ttcagctgga      4680
     agagataccc gccaaaagcg gaacgggtgg atatcttgaa caagatccac agtcaggcac      4740
     atttgggtgc agagaagacg ttggcagctg tcaaggaacg ctatttttgg ccaaagatga      4800
     gtagccagat aaagaagttt tgtcagacgt gtctcacatg ccagaccagc aaggcaacga      4860
     accaaaatac cacgccaccc atggcagagc aaaagaaaat tgcgcagtat ccgtggcaat      4920
     tcctggcgat ggattacgtg ggtccgttgc cagcatcggg aaggaaccgt agtacatgtt      4980
     tgcttgtagt caccgatctg ttcagtaaat ttgtccttgt ccaaccgttt cgtcaagcta      5040
     ctgcagagtc tcttgtccag ttcgttgaaa atgtgatttt cctcctgttt ggtgtacccg      5100
     aagttgttct gtccgataat ggaacgcaat tcgtgtccac aatgttccaa aatctgcttg      5160
     aacggtacgg tgtcactcac tggaggacac ctaattacca tccccaaata aacgactcgg      5220
     aacgtgtaaa tcgggtgatt acaacggcca tacgagctac aatcaagaag gagcacaaag      5280
     agtgggctaa caacctgcag cagattgctt gtgcaataag aaattccgtc catgaagcta      5340
     ctcggtatac tccatacttc ataatgtttg gcaggaatat gatttccgat gggacggaat      5400
     atcgtagctt aagggattca ccaacatcgt ccgcaggaac gctaaacgac cacgaaagga      5460
     aaaagctata cgaagaagtg aggcacaaca tagaaatagc ctacaaaaag catgcgacct      5520
     actacaacct gcgatcaaat gcaaaatgtc cgatatactc cgtaggggaa aaagtcttga      5580
     agaagaacat ggagctatcg gacaagggga agggagtttg ctcaaaactt gctccaaaat      5640
     atgtgcaggc tgtagtgaaa agggtcgttg gaacccactg ctacgaccta gaagatctga      5700
     atgggaagag acttggaatc ttcaactgca agttccttaa gaaactggct cactgaagct      5760
     gttcttaggg aatacagttg agcgggactg gttatcaagc tatgtagctc tcagttgagt      5820
     agcaactacg caccatgatg ccttagctct ggttgcatga aaacactagg ttttaccacc      5880
     gtttgtgaga tttagctctg gccatttggt cggggcagcc ccacaacaac attatttact      5940
     gggtgcattc ctaggtggaa aggctttggc tggaccccta gaagaaatct cacagacgtg      6000
     ctggactagg cagtcaaggt ttgatctaga agtagagtct ttgttgaaga ttgttggtct      6060
     gctcacgcct accctctcga ccggaagaca gagcgagtcc atggagttta ctccaggacg      6120
     atgagcttga aaattagaaa ctcggagcta ataaagcgtt gatgaggagt acctgaaaag      6180
     gaaagcattg aagcgggagt ctggagaccg agggttctca gacggtgatc gcctaagact      6240
     cggatgtctt gctcgtaaga gtagacgatg aagagcacac ccgagtaaat cgagcaagta      6300
     gatcaacaaa tctctgagaa agaaactgct gtctagaaaa aaatcatttt aggattgtat      6360
     atagctctct cccaattgta aataaggaca taatccaact tttctaaatt tgtgtgttct      6420
     gtgggtgttt ctttcatgta tactaatgtt agtagggtag ttaacatcga gtcttagtct      6480
     aatttagtat ccttaaggct agactttatt taaggttcgt gttgtgatag tggtgtttta      6540
     ttgacaccct tgtatatatt tgtgtttcat gtttcgttct tgagtatgaa tacatgtaaa      6600
     cagatgctta tttattttcc tatttattca tgcagatatt tttcatattt atttatttat      6660
     ttatttattt gtttatttat ttgtttattt atttatttat ttattagaga tttatttatt      6720
     tatttattat aaatctattc atttatttat tagaaattta tttatctatt tattgaagat      6780
     ttatttattt atttactaaa ttatttattt attggagatt catttacctt atcatttatt      6840
     taattattta gtaatttcct taattaatta aattggcgga atcacgcatc tcgccctgaa      6900
     gaatccgttg gttcgtcctt tttgaacgac ccaccatgca acatcttcgg gtgggtcgcg      6960
     caacatccct cttgttcgat agttcctaaa acaaaaaaat tactattatt atctgttcaa      7020
     taaacttacc tttaatcgga atccaactgt cctttggctg agccctattc tcgaggtggc      7080
     cctatcgtct tcaatcccag gtcggattcc gaatgtcaca gtatccaaag ctaatcaatc      7140
     tccgtgggtc cagccgcaaa tccgttgata aaatccgtaa ttcacctaga gttgaagaaa      7200
     aggtattaaa aatcagttca acccacttac cttcatcata ttcgtcagct attaattaag      7260
     ttaaatagcc acaaacagct taaaacttag aaatttaccg catccgtatc acttgttcct      7320
     gccgtcacgt aaacactgtt tctcaactga cgttttgttg tttactcgtg ggggttcaat      7380
     gtatgggtga aaatgttgca ttgtatggtt gtgttaggtt tgtcatttta ttctgcttca      7440
     tagttgccag ataacatatt tggtgttaga aacatgaatg aaagtgaaat ttggggattg      7500
     tagtatgtgt tttgtgtttc gttatagctt gaatgtttaa gcgttgaaac aacaatcaat      7560
     actactgtta agtttgtgga tatttgtggt cagttgtata tgttttgcgt gccgatgtta      7620
     ttttcggtgg ggaaaataca acggagtttt cgtaatttgt gttaggtcta cgttttgtca      7680
     attagagtga tgtatgaact agggaacagc cttggtggca cactcgaaag acaaaatagt      7740
     tgcggtttgg acagagtaga gacaccgttc caacaacatg attggagtag tctcgaaact      7800
     gaccttacct gtttttttgg agttatgtta tgttcggtag gttgaagtta tgttgtgttg      7860
     tgtagtatga ggttaggctt tgactgaaat atgatcattt tagtccaaat gccgtctttt      7920
     gggaatttcg ttgtcttcga ggatttatgt ttatgttgaa ccaccaacga gtaaacttaa      7980
     acgttgaatt ttcttccgta ctttcttatg atgaaccaaa gaactttaaa gaaattttgt      8040
     aaatattaaa taggtagagt atagtttatt tatttattta tttatttatt tattcattta      8100
     tttatttttg taaacagtaa gttaatttcg ttgcttgtta aattattgtt tgtgtattta      8160
     ttattaaatg ttatatcgtt aggtttgccc ttacgaaaat ttggttgtag tcctacaacc      8220
     aaattttcgt aaaacaagcc tggtgtta                                         8248
//
ID   Gypsy-400_AA-LTR repbase;    DNA;    INV; 1934 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.01, Created)
DT   18-JAN-2019 (Rel. 25.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-400_;
KW   Gypsy-400_AA-I; Gypsy-400_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1934
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1934
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(1), 153-153 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1934 BP; 503 A; 430 C; 465 G; 536 T; 0 other;
     tgtagccttt gctccatgta aactaaaagt tgattgaaat atagtatgta atatcactca        60
     aagtgatcta atcttatgat caacactgcg ccgtaaagta taccggtcaa taacacaaat       120
     ttgccgacat tttggttacg gacgttatta agaaacatat tcggccctga gaattagctc       180
     cgaaggtcaa gtttcattcg gaatcttcgg agaaagtcga gagagaaaag gtcgcggccg       240
     aacgcgaaac ctgagcgatc ggccagcgta ttcttcttaa ttaccgaact atttcgaaga       300
     agttcgtggg acatttcgag cttccgctgg actcgaacga ggtcatcttc cctaatctga       360
     gggtcacggc ttcgattcaa tttcgtccga accgtcaacc aaagtggaag tgtcgcgtgt       420
     gatcgtgatc gtgtccttga atttgtaaga ggaaatttaa gcaacgtggt tatagtgtcc       480
     tttatccaga ttattttctt tgttctagtc cctagtttaa tagttagaat attcaagttg       540
     tgcgttgtag gcaagtttgt gcgtttcctt aaccagaata caggtatgtg ctcagtgtgt       600
     ccgtcccgtt cccaaattcc gtgcattgtg ctaattcctt tgtgtaacag ccgtcaaccg       660
     caagaacaac gtccgcgacc gcgacattgc catcttcgga acgaaagtcc ctgacaaccg       720
     tcattccgtc gggaaggaag cgatccgtca ccaaatcgct tcggagtcaa ccgcggctgc       780
     caagtgccgc ccaagaagga ctcaagccaa ccacgagccc atcttccacc aaattccacg       840
     tggatcgtcg accgcgggtc caaaggtcgt ttttcaccgg cgtggtccgc gcgcgctagg       900
     accaagagcg cagaaccacc aacagtaaac gatcgccatc atccaccgct accgtaggta       960
     accaatacca gcgcctgcag ttatcggtga gtccgttgct tttttcattg tgaagggcgg      1020
     cgtccggtga ggacgccgcg gaggattttt tttgccgacc aaaggtcgtg tactttaatt      1080
     ggactgccaa gtcgcctcga ggcgcgtcca tgaaatttta aggttgggtg cgatatgcta      1140
     taaacgtgcg cacgtaattt ttgaatgacc acccaaccaa atttctatta gtcacccggg      1200
     tgccaagcat tttgttcgtc tgccggcatc gtcgagggaa acctgcatga gatgagaatg      1260
     aatgagagga atacacacta gcacgagcac aggagaacag gattagatag gagtagaaaa      1320
     aaaaacgcac atagaagact agaacgatag gtaatcgaaa tacatacatg catgtgataa      1380
     ttatccgtaa ttaaatgatt cgtttttttt tccattatac gttgaatgtg ttgtttttga      1440
     ataaagatgt gaagcgcaag acaaaattgt tacacaacta atagtttgga gaaagattct      1500
     agttccacgt tgtttcggtg cgtgtccttt tcgttgaatg tcttccgcgt gttggaattt      1560
     gactttgttt gaatttgtct cttccacttt ggttgcgcct ctggcgggaa gtagttgaag      1620
     ctgccaatga tgagagcata gcgtgcaacg ccacacctta atgttgcatc gcctttaggt      1680
     acgggtgatc tctcaccgct ctttggagac gtagttttgt aattgagaag ttatgttggt      1740
     tgtgtagggt aaagtaccta gttttggtct agttagtagg cgaactggct cgatctcaat      1800
     tttctttgaa gatttcgaat ggactcgccc tgaacgagtc tcaaccgggc aatattagac      1860
     ttgtcgtgcg gtctcctcac ggagtggcgc taaaaccgca tgatttatat ccagatcggc      1920
     cagtgtcggc taca                                                        1934
//
ID   Gypsy-401_AA-I repbase;    DNA;    INV; 7300 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-401_;
KW   Gypsy-401_AA-I; Gypsy-401_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7300
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7300
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7300 BP; 2409 A; 1395 C; 1583 G; 1913 T; 0 other;
     ttggcgcagt cggtagcgcg gaaaataaac cgaaggagta agtatggttg agatcaaaag        60
     agtttgcaaa gtccagagtt cgattagaac tgattgatgc tataacaaaa aaaaaataaa       120
     tgagcaatgt ttgaaaaaag agaaagaaaa aataaatgcg gaaacaagag atgaaaaaaa       180
     aaataataaa tgtgatcgga acaaaaaaaa taaatgcgat agaaacaaaa aaaaaaaaat       240
     aaatgcgata gaaacagaaa ataaatgtca cgaaaatatg gaacagttga ataactgaga       300
     tggaacctaa acaaaaaata aatgcaatga aattagaaat taaaaaaaaa aagatggaaa       360
     atttaacaaa aaaaatatat gttatagaag aaaaacaaat gatcaaatga aatcaaataa       420
     ggaattgatg agataaatat tggaacataa gggagctgaa aagctacttg aaggaagtaa       480
     aataaaaagt taaaatagtt gtgtctggag atcgcttgaa atttttggat caaaagaaac       540
     ggtgatgctg ttaattaaaa gatgttttat tttgtccctt gttacagaaa agtatcaaag       600
     aaaaaactgc tcagagagct aaaagacgct gttgaaaaaa acacgtctct acgagaacag       660
     atatcaagac tttcagcgga acagagtgta cgtgatggac tcaatcatgc ctgttcgagt       720
     acaatgagag aagaatcttc tgagaccagg aatgattcgt tattattgtc aacgatgacc       780
     agttggactc tgggaacatt gaatatccca caatgtgtcc caaccgaagg cgaaacggaa       840
     atcgacaaga gatcatatga atattggaaa gaaacgctgc tcgcgtcgct tcaattggtg       900
     aattcagcag acgaaaatgc caagtttggt gtttttaaag tcaaagcagg agccaaatta       960
     cgagaaattt tcagcactac gatttcgtca cctggaatgc ctgacgagga gacggcgcca      1020
     ttttcgaatg ctgtagcgcg cctggatgat tattttagtt cacgaacgta cattctgtct      1080
     caacgcagca agctaatgaa tttgagccag ttcccctctg agagcagtgt cgagtttgtc      1140
     cgccgaatcg cgacagctgc caagttgtgt aattacagta tcgaagaaga aatggaagcg      1200
     gtggtccgtg ttgtcaccaa aagtgcgagc gatatcaagg ttcgaacgct tgctcgcagg      1260
     aattggataa agcaaggaac tatgaaggat cttattgact tggttcgaga acgtgaatac      1320
     gagaaagaaa acgaagaaga agaactacag aaactacggc cccgaaccga ttcgatgaat      1380
     gttgcagctg tgtctacaag atcgtacgat gtgcaagtgc aacgacaagt aaactggaga      1440
     gacagagcag ttcctcgagg agtgttccgt ggtagccgtg gtggtcgaag aggaggaaga      1500
     gcgttcaact cgggaatgct acgcaaccaa ggtgaaaaga actgttggag atgtggcagc      1560
     ttcgctcacc ggtctttctc atgctctgca accgaaaaag tgtgccacaa gtgcggacgt      1620
     atgggccata tcgctcgagc gtgtacatcg tcgagccaac aaactcaagc aaggtcatgg      1680
     aagcgtccat tggactcaga cgagcaaggc gttccaagaa aaatcgcagc aatcgagtgc      1740
     aaacctgagc agcaagaagc agtcaataag gtacaggatg ctgttgaaga tccggagtag      1800
     atctgactat tttctatcat gatttctttt acgatatcct aaatggctga aacgtggatt      1860
     aaattcagca aaacgattct tttttttcat gtacaacctt ccttactaat aaaatgaact      1920
     taaaaacaaa ttgatgggct tagagcttat ataatttatt tcgtagcatg agtcatatat      1980
     tgtaatcaca tggtttacct tgaacgattg aatacttgaa agaaaacgct taggagcctg      2040
     ataagtagat cacagtctaa cgaagatcga atcgtgtatc cctgataatc aggaatttga      2100
     taatttatca tctaatattt agttctattc ggacttcgct agtatgatcg atggaatctc      2160
     ttagctttag acaacgtcaa atgatgtaac agtgatcaaa ttttacgtca atcgtgcctt      2220
     taatgattct ctaaatttgt ttagttgcac attgcaaacg acgttaatat tatcgaaatt      2280
     aacgcaatga tccatggcac agtaaatatc ttcgtcaccg tttgtgattc ctcaataaaa      2340
     ttgaaattca agaatgcggc tcgcgtgatt tttcaaaatt atcgttgctg cttgctgatt      2400
     ctctctacca tgtggttcca atgatgatta ttaactcgaa taaacaaacc taaaaaaaag      2460
     aaataaaaaa aataaaagaa aaaaaatgaa aaatatattt ttaggtatca ctgaagctgg      2520
     tcaatcgttc aacagacgca acgagtagta gtcacaatat atgtacaatg caaatgcaac      2580
     cctcaatccc attgattgtt gatgcgataa tcgttgccag agtcgcagga cttaaagttc      2640
     agtttatgat agattcaggt ttgtagtaca tagttgtaaa taagattaca attatatgat      2700
     tattttactt aggtgcacag gttaacacca ttacgaagaa gtcattcgac gaaattatgg      2760
     cagacaaaat ggcatcgtca aaaattctaa cattacgttt ctcctctgac aagcccctta      2820
     aagcatatgc ttcaaaagaa catatcaaag ttgaagcaac tttctcagca gagctattca      2880
     tttcggaaga tcggcccgtg acaatagaaa aattctacgt tgtcgatgag atacatgcat      2940
     tgctcggttt taataccgct atcagatatt gcgttcttga cataggattg aatgtaccag      3000
     taagacgtcg ggatcaatgg ctgccgagac gttatgatac gagcattgct acagttgaac      3060
     cattggaacc gtgtaaggag ttcccgaagt tcaatgttcc gccagttacg ttgaattatg      3120
     attcagataa acctccttcc agaaatgttt acacaaatat tccttcggcg ttcaaggaat      3180
     tgacaaaact aaaactgaat gagttattat catctggaat catagaaaag gttacgccaa      3240
     atatggacag atccttttgc tcatccctat tggtagtccc caaaggcaag gatgatatcc      3300
     gtctggtgat cgacttaaga ggccccaacc gaagtatcca aagaacaccg tttaaaatgc      3360
     caacttttga gtctattcta ttggaacttc acggggctca gtggttctca acaatagact      3420
     taaaaaacgc gttctttcac attgaactga acgaagactc tcggcattta acaaattttt      3480
     tcgcgggaga tggaatctac cgttacaagc gactgccctt cggcctctgt aatgcccctg      3540
     atatttttca ggaaatatta caaacagtgg ttcttgccga ttgcgaaggt gtcgtaaact      3600
     atttagacga catcatggtc tatgggaaga cgaaacttga ccatgacaga aacttggcga      3660
     aagtattggc atgtttggag aaccataatg tcgccataaa tgaaggaaaa tgcgtgtatg      3720
     gccaacaatc agtaccattc ctggggtttg aagtatcatc gaatggatgg aaattagaag      3780
     atgaaaagat cgctgcactt cagaacttta gaagcccgga aacgcttgct gaagtaaaga      3840
     gctttttagg actcgtcaac ttcatcgaga aattcatccc taatcgtgct gagagaacgt      3900
     ggaaactgcg tgaattggcg aggtcggaca aattctactg ggatgctgag ctagaagaag      3960
     aattcgaata tttaaaaaac gacgcctgga gaactataac aactctcgga tattacagta      4020
     gaaccgacga tacagagctt tacgtagacg catcaccgta tggtttaggg gctgtattag      4080
     tccagtttga taaagagcat agccctcgag taattgcttg cgcgtccaaa actctatcac      4140
     tggcagaaca gaaatacccc cagactcaaa aagaggcgct agcgatggtc tggggtgtag      4200
     aaaagttctc gatgtacttg atgagtattt cgttcaccat cagaacagac gctgaagcca      4260
     atgagtttat tttcagtggc ttacatcgta ttggacgacg tgcggtgact agagctgaat      4320
     cgtgggctct gagattacag ccctttacgt ttgttgtaaa aaggattcca ggaaatttga      4380
     acttagctga cgctctttct cgattggtta agcaaaattt accggaaaaa tcatttgatg      4440
     acgatgcaga tgaaaaacac ttattgtact atcttgacac gggagcaatg gaaatctcat      4500
     ggcgagagat agaagaggct tctgaattcg acaacgagct ctcaagagtt agagatgcta      4560
     ttaaaactaa tgaatgggat gcaggtcttg gaagatatga aacgcaagcg aaagaactac      4620
     gtgtttttgg atgcttgatc ttcaagaacg atagaattgt ccttccccaa gtattacgtc      4680
     ggaaagctat ccagtcagct caccagggac acggaggaat atcatcaacg aaacacatca      4740
     tgcgtgatta cttctggtgg ccgggcatga gtgccgaagt tgaatcatac ataaaggctt      4800
     gcgaaacatg tctccttgtt tcgaagaaaa acccaccaat cccactaaca tctagagaac      4860
     taccccgagg gccgtgggaa atactccaga tcgatttcta taccgataag gaatttggtt      4920
     gcggagaatt cttagtagtc gtggacacat actccaggta tttacatgtg atcgagatga      4980
     aatctatcaa cgcggatacc actattgatg ctttaagtaa agtcttcacg atgtggggat      5040
     acccgttggt catgcagagt gacaacgggc ccccctttca aagtgagaaa ttcgtaaaaa      5100
     cttgggagaa caaagggata aaaatccaga aatctattcc tttaagccca cagtccaatg      5160
     gagctatcga gcgccagaat caaggcatca aaaagatctt ggccgcatca aagttggaca      5220
     acagtaattg gagactagcc cttgaaaatt acgttcatgc gcacaacaaa gttcggcctc      5280
     tgtcacgtct gggagtgacc ccttttgagc tgttagttgg atggaaatgg cggggtttct      5340
     tcccatgcct atgggattcc aagctgcctt acgaagttga ccgagaagac attaaagaga      5400
     aagatgcctt tacgaaacac gaaagcaaga agtacactga tctgcgacga ggagctaaag      5460
     catctgattt atccgttgga gacaatgtag ttcttgcaca gcagaagcga gccaaatctg      5520
     atcctacttt tggctcggaa aagttcacaa tcctagccag agatggtgca aaaatcgttg      5580
     ttcgcagtga acgaggtgtg ctgtattccc gaaatgtcga ggatgcaaaa aggatctacg      5640
     aaacgactga cgatgataac tcagatctag ctgaaaccgg agatcagtta gattccacta      5700
     caagaaatgt tgttaacaac accactcagg atgatcggta catgattacc agccacggta      5760
     ggatagtatt gcttttcttt ttctaaataa tattaacaat gatatgttta cacagatgca      5820
     caaactgaag ctgaaagaga aggcgaagca caacagaatc agagactcat tgaaatcaat      5880
     gatcattcaa acggttctgc aggacttcgt tcatggaata ctgcaattga tgcccaacac      5940
     ggggcgcaag gagaagagag tcaacaacgg catcaagtac ctcggccaag gccaagccgc      6000
     agtaccaaaa tgcccggaaa attcaaagat atggtgttat accacgtatt cgaatgattt      6060
     cttatcgatt gtaacgtcat acttgatttg aattaggata cattgtaata aatttgttta      6120
     gagatacttt tctacgaaat cttgtttttt ttttctctta ccgttcgatt tcaatgctaa      6180
     catttgatca gcttcatcca acaccaaata cgagcttcgg cgttttgcgc ttcccccaaa      6240
     gagacaaata ttcttgattt ttattgcccg tccgaagtcg tcggtgacct gttttatctg      6300
     ctgtgccaat tcccgagtag gggccagaat cagggcaatg ggtccatctc cacgacgcaa      6360
     tcgcgactgt tcatcgatgg gcatcaaagc gggtagaaga taagaaagcg tcttaccgga      6420
     tccggttttg gtaattccga ccatgtagcg gctggccaac cttgcgactg gatcagagtt      6480
     ggagtggtta actccgcgta aacatcggca atctcggtcg gaaatcccac ttccttgaaa      6540
     agttaagtgc tgcatccgga acgtctcatc ctttggtcgt gatttccttg gtctttctcc      6600
     attcgctgat ttctcgttcc gagcgccgga aatctacttt cgaacggtaa cttaggcgcg      6660
     tcaccaattc cagcttctga tggttccagt tgacaggttt gaacataagt tgcgccttgg      6720
     taacgtcata tcgctttgtt cctctcctcc acgacgagga tttcggctcc gacttcgacg      6780
     atagctaata aaagaaacat tattattata ggtgtgccac tgtgagcaat atgatggaaa      6840
     aagtcactaa acaaacttac cctccccttt ttctcatatc gatcctattc aaaaaacccg      6900
     gaaagctatt tcaaagtgat aatggacgat tactgaacac ttcgaaatac ttttcaaagt      6960
     ataaaaatac cgcagacaag tcaaaaatga atacaatttt ccgcaaacaa aaatagctgc      7020
     agccaaccaa aaatttcact ttcttctccg tctcactgtt ttcgcgaaaa gacagacgct      7080
     gaaatcgaca ttcgacatga cgtcatcagg agagacaagg gataggaatg aggcaacacg      7140
     aaaacactag cgtaatgttt aaattgaact tatttatgta ttatttactt gttttgcaat      7200
     ttgatttttt ccgtgtaagc aagattgatt aaaaagtttt atttattttt atggatggac      7260
     aatacagaat tataattgag agagtacagg agaggggaat                            7300
//
ID   Gypsy-401_AA-LTR repbase;    DNA;    INV; 428 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-401_;
KW   Gypsy-401_AA-I; Gypsy-401_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-428
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-428
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2098-2098 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 428 BP; 135 A; 65 C; 105 G; 123 T; 0 other;
     tgtggtatag aagcgaagta atcagcatta tgatcaatta tgaagataga tgagtcagtt        60
     ccgggctgca aatctcttac ataaagatac ctatcttata attatgaata aaacattata       120
     atatgttgat ctatattaac ggagcgttaa taatgtcatc atttatgaat agtacctttt       180
     gaaatgttag gctttataac ggaatattag ggaagcggga ttgtagaaaa aaaaatgctc       240
     ttttactcgt tgtggagagt ttctctcgag tgagaggtaa aagggtcttg gcaaaagcag       300
     acggaaaact cgtggtagtc tttcgaatat agtcaacgag aacggacgtg agatgtcgga       360
     tggagaggac tccaattccg cggacgttgt tccagccggc acattcgtga gtttggccgg       420
     tcgcgaca                                                                428
//
ID   Gypsy-402_AA-I repbase;    DNA;    INV; 5146 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-402_;
KW   Gypsy-402_AA-I; Gypsy-402_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5146
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5146
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2086-2086 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5146 BP; 1539 A; 934 C; 1298 G; 1368 T; 7 other;
     aattggcgac gaaggaaaac acagggtatg tattttaatc gaaaatcgac ctaggaaagt        60
     gaaaaataaa aatgtttaga gtgtgcagag gttggcttca aagtkggaaa catggcgtcg       120
     tccgaaaatc atagacagca tgtggtttct gtatttgctt ggtatgctat cggccgtacg       180
     tctgtatgtg tacgagtgtt agtgacatgt ttataaatct gcttgatagg gtgaagttac       240
     ctattgatgt cgatgatttc tagaagaata aaacaaaaat aaacatgggt cgggatcatg       300
     taatttttta tgtatatttt gtagaatgtg taaggagtga tgggtttgaa ctggaaaaca       360
     accgagatgt acaatgagaa aactaaaaaa aaaacatttg aaattataaa aagtagcgat       420
     cgaaagggtt gatcaacatt cgcgagggac gaatgtggcc acattgtgtg aatgactggc       480
     tggagtggag aagaaagtag tttacgatgg ttgatggaca ttgaattact ataaatattg       540
     tgagggacaa tatgtttctg ttttcaggat gattaaccgg gttacagaga ttcatcgtga       600
     ggggcgatga atttctagag gtattgtgta catagataat aaatattcca tcgtgaggga       660
     cgatgtcaaa ataatatcgt gtgggtcgat agtacacaat atgtcgtgag ggacgaccaa       720
     taacataata tcgtgagggg cgatatttca tcgtgaggga cgatgaggat tgcttaccaa       780
     tgatgggtgt atacattgat aactgatgtc acatcgtgag ggacgataaa tgactaggaa       840
     gtatcgtgtg ggtcgatatg aatcatgagg gatgatcaat atatactgat attcaaattt       900
     atttattttt atccgaaagc aaaaaatcat acatatttat aaacgkataa ataaaaacta       960
     ctttaacaac aaattcctat gtaattcgag ctcggcagtt aaatctaaac aatgggtgtt      1020
     tggtattgtt atattgataa ttgcagatgg aagatacaag gcccatgcca cagtttaggt      1080
     gcgaggatat cgctaaggca aggcttcatc atgaatggwa tgattggaaa agtggtttgg      1140
     aaagatactt tgatgctcac gatatcacag atcagtacaa aaagcgggct aagttgctat      1200
     atctgggcgg accacaattg gacaaagtat tcaccaacct tcccgatggc aataaattcc      1260
     cgttagttgc tattgagaag agatattacg acgtggcagt tgcggcattg gacaattact      1320
     tccaacctgt gaagcaggac attctggaaa gacatcgttt gcgtcaaatg aagcaacaat      1380
     ctggagaaaa gtttgcacac tatatggtag ctcagaagtt taacaaacat gtttggttat      1440
     tatgattaaa tccaatttat aactcttagg ttcggttaag acagcaagct gccctctgcg      1500
     gttttgacaa atatcctaaa gtgacgagac aggttttgac tgacatgatg atmaccgatg      1560
     ttattgtaga aggttgccaa tcgatcgaac ttcggcgacg aatgctattg aaagatcgca      1620
     cattagacga gatcgaggag attgcttctg gcttggaagg tgttgattct caaatccaag      1680
     atctcgcagg gaagtcaact gagggttatg cttctgacaa ggtgtataaa gtgaagcatt      1740
     tttcaacaca gggatttaga cgtccaccgg tgcctaattt cagatcggat agggggcgtt      1800
     atcgaggacg tcagtctaca cgacaagcag caaacattgt ttgcttcaat tgcggtaaat      1860
     cgggtcacat tgcgtcgtct gaaatctgtc cagcaaaggg gaaacagtgt cgaaactgta      1920
     gacgaatggg acactttgat tttacttgta aatcgcctcg ctcttctgag acacgaactt      1980
     cgtcttcacc accgagtaag aagattcgag ckgtggaaca aaatgaaaca catgatgccg      2040
     atgatggaaa agtttactat gctttcttca acggtaatct gaccaacatg ttgacattcg      2100
     atgtaggagg cgtgtcttta gagatgcttg tggattcagg agcggatgcg aacctggtga      2160
     cactggaagc atgggagacg ttaaaactgg ctggtgtacg cgttactaat tccactaaag      2220
     aatctgatcg atcctttctt tcgtatggta gtamtagtcc acttgcagtc cgtggaatgt      2280
     tcacagcaga gatcaaaatc caagatcggg tagcactcgc tcaattctac gtcgtggaaa      2340
     agggacagac atgcttgtta ggagatgtta ctgcaaagca gttgaaagtg ttgcaagttg      2400
     gtgccaatct gaaccgtgta gagaagtccg aaccgttctc ttgtatcaag gatgtagaaa      2460
     ttcacattca catggatcca gaagctaagc ccatcgttca acctgtaagg aggttgccaa      2520
     ttcctctcga agctgaagtt aatcgaaagc tggatgaaat gcttagtagg gatattatcg      2580
     agttaaaaac gggcccaact acgtgggttt ccccgttagt cgtcgttgct aaggcaaacg      2640
     gaggattgcg gttgtgtgtt gatcttcgta gagtgaatca atccgtcttg cgggagcatc      2700
     acccgatgcc ggtcatagac cacatactgg cacgaatcgg gaacggtgtt gtctggagta      2760
     agttggatat aagggattct tttcttcaaa tcatggttgc tgtggagtct cgagatattc      2820
     taacgttcat cacagaaaag gggttgttta ggttcaaaag actccccttt ggcctaatca      2880
     cggcgccgga aatttttcaa agggttatcg acgaaatact ttgcggatgc gaaggtaccc      2940
     attggtatct cgatgacatt tttgtagagg gagagacgct tgaggaacat gatgctagat      3000
     tggagaaggt aatggctaaa ctcaaggagc gaggagtaca attaaatttg gacaaatgcc      3060
     gattcagagt gactgaactt gaatttcttg gctacaagat ttctgagtct ggaatagctc      3120
     catccgatac aaaggtaaag gcaattatgg attttcgaca accgacaaat gaaagtgaag      3180
     tccgtagttt tttgggcttg gcaaactacc ttaataggta cattccccat ttggccactc      3240
     tggacgaacc tttgagagag ttgactagga aaggagttaa gttctcttgg ggtccagaac      3300
     atgaaaaatc ttttcaagct atcaaacagg ccatgtcaga tgttcgtatc ctcgggttct      3360
     acgatgctca tgacagaaca gcagtgattt ctgatgctag tcctacagga ctaggggcga      3420
     tgctgataca gacgaacaat caaggagtcg atagagtggt tagctttgcg tcgaaatcac      3480
     tcacagtgac cgaaaagaga tactgtcaga cggagaaaga agcgttgggg ctagtatggg      3540
     ccgtcgaaaa gttccaattt tatctcttgg gtcgaaaatt tgacttgatt acggattgta      3600
     aggcacttat atacttattt actccgcgat caaggccatg ttcgaggatt gaacggtggg      3660
     tgttgagact gcaatgcttt aattactcga ttgttcatat tcgaggggac caaaatgctg      3720
     cagacgctct ttcgcgtctt tcgtgtgcca gcgttgaacc ttttgactca gctgaggagc      3780
     ttgttgtcca gcatatagcg tcagttagtg cagagtccgt cgcagtctct tggcaagaat      3840
     taattcatga atctcgagac gacgcagaaa tcatgaacat tttgaaatgt attgaggagg      3900
     atactattga acaattacca actgtgtatc gtattatttc ctcagagctc tgtgatgtag      3960
     ggggagtcct tctgcgtgga gaccgcatag ttgttcccgc aggactaagg caacgagttt      4020
     tgaacatagc gcatgacggg caccctgggg tgcgaatgat gaaatcgtat cttcgatctg      4080
     tcgtttggtg gcccaaactg gatgctgaca cagaaaactt tgtgaaaagc tgtcgtggat      4140
     gtatcttggt tgctgcacct gatgcccctg agccaatgct tcgtagaaca cttccttccg      4200
     gaccatggga agacatcgct attgattatc tcggaccact tcccgagggt cagaacttgt      4260
     tggtgatcgt cgattgttac agcaggtatc ttgaagtgtg cgaaatgagc tgtatcgatt      4320
     caacggagac aatcagccgc ttacgacaag tgtttgggag gttcggtata ccatcgctga      4380
     ttaaagcaga caatggtcct caattcgcca gcgcagagtt cagaatgttt tgtagtgaat      4440
     acggaataca gctggtcaat acaatcccgt attggccaca gatgaacggc caagttgagc      4500
     ggcagaatcg ttcaatttta aagcgacttc gtattgcgca agaactcggt aaagattggc      4560
     gtaaagagtt gcacgagttc cttctcgtat atcacgctac gaatcacgca actaccgggg      4620
     aagccccttc gaaactgatg tttggacgcc gaattagggg aagacttccc tatgttccgg      4680
     ctcaatatga tgacgaggca gtacgcgatt ttgatagcct ccagaaagag aaggggaaga      4740
     attattccga caagaagcgt cgggccgctt atagcgaaat acgggaaggc gacaaagttt      4800
     tgcttaaacg gatgaagaaa aaccataagt tggaagcaga ttattcccca gaggagtact      4860
     ttgttgtgaa caaaactgga gcggatgtac tcgtacgttc ccggctttcc gggaaagagc      4920
     tacgtcgaaa tgtaacacac ctgaagaaag ttcccgagga aagagaaagc gcaaagagta      4980
     atgaaaccgg tcaaactaca tcaaacaacg tggctgacga agagcaggaa actcaggaaa      5040
     ccatccaact gsaagaagag cctgcaggtc gcaaacgcga gcgacaacaa ccaacgaaat      5100
     tcaaagacta tgttccatat taaagttctg aaagtaaagg tggggt                     5146
//
ID   Gypsy-402_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-402_;
KW   Gypsy-402_AA-I; Gypsy-402_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2099-2099 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 214 BP; 74 A; 27 C; 75 G; 37 T; 1 other;
     tgtagggtct gggagcacgg atctagctag aggagaaaat gggccatgga gggttaaggg        60
     aaaagagatg aggtggatgg gaaggaagag aagagagggg ttgttgtgag atggaagaaa       120
     agasgagtga cacgcgaata aaccggggcc gttatcaaag cgagtaaata gttacgagat       180
     tccgtgaaca atccgaagat accgctatac taca                                   214
//
ID   Gypsy-403_AA-I repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-403_;
KW   Gypsy-403_AA-I; Gypsy-403_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4368
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4368
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4368 BP; 1613 A; 630 C; 769 G; 1356 T; 0 other;
     gttcagaagt gggataagcc atgctattac gaagccaaaa gacctctgca gaaatggaac        60
     agacaatttt ctcaagccat ggtgcatttg aaaatcgatt ttcccgtgga gaaagtggaa       120
     acgaaacccg aaattcaaat actgtggatg ttggagattc tgtaaactct gtccatcctg       180
     ttacgagtcc tttacctgag gagagaatag gagacgtgtg cttggaaagg acgtcgagaa       240
     tacgtagaaa ttcatttcaa gaaagcggat cacaagctgc aggtatcgcc gtgccacacg       300
     caatgaatgc tgctgcttcc gctgcccaca tagcttcagg gtcggtgtca aatcgcatcg       360
     aacctggaag tggagattgt atcagtcaag attgtaatgt tcatcaaatt caagctcaaa       420
     attcaatcaa ggaaaatatt ccgttgattc aaaatagttc aaatttccat caaattcatc       480
     attttggacc ggaagagatt tctattatgc tgccatcctt tgctggagct tctgaagaag       540
     atgtcaatca ttttgtagct gttttggaga atacgaaaaa tgcgcttaaa gttaacgagt       600
     ttatcatgaa gtttgtgatc atccggaacc ttaaaggtaa agctctatcc tggctacatt       660
     cgcaagctga ttttatgttg aagagttacg atgaaatact gaagaacctc aaagaatttt       720
     ttgatcgtcc tgtgaacaca tttgaaattc gcaagcgttt ggagaataga acctggtccc       780
     caaaatttga aactttttct gattattgtc aaaccaaaaa agttatagct caacctttga       840
     agatgccaga atcagaacta cttgagtaca tcgtagaagg aataatggat ccgatactga       900
     aaaatcaagc aagactatca aatttcaaaa cccttggaga aattattcaa gctttcagaa       960
     tgttcggaat ttcctcagca tcaaatttgt cttcttggaa accaatcaag tgctattctt      1020
     gtcatcaacc tggacacgtt gctgcatttt gctggaagaa tcgtaataat acttcgaggc      1080
     ccaatcccaa caggagaaat gtgcgtgatg aagctccaaa accaaaattt gtaaatgctg      1140
     ttgttaaaga tgacttagct gtagaagatg gacgttcagg attggtagat tttcagtttc      1200
     ctagtcaaaa tagaatattt aaatctttat atgatacagg gagtccaatt tcactaatac      1260
     gtagaggttt agtagaaaaa tctagaattt ccaattataa cgatagtaaa taatataaaa      1320
     gtattagtgg aaataggctc aaaattttag gaatttttaa gactgagata atcatgcaaa      1380
     acattcattt cagaattgag tttcatgttg ttgctgacaa atacttagga ctcgtcgatg      1440
     ccataatcgg aagagatgtg atcatgcgtc cagagattaa aacgatcatt caaaatggaa      1500
     tcaaaatgta tgatgtcaat aaaaggtatt tacagtttga aaatccttct aacgttcagg      1560
     taaataataa aaaaatatgt aatatcagtt ccgaaattta cgaaactttg ttatcaaata      1620
     ttggaaaaat atctgatgac gagatggcaa aatttttaga atgtttcaag agtaaatatt      1680
     atttcaacaa aaagccacat aagccagtta cagaatatga aatgactata tcgttaaaaa      1740
     aagaggaata ttttcatttc aaacctagaa ggttgtcata tgatcaaaag aataaagttg      1800
     acgggaaaat taaagaatta ttgagagaag gaattattaa agaaactaat tcaccgtatg      1860
     ccagccctat tgtattaatc cctaaaaaag ataatgattt taggttatgc gtagactata      1920
     gaaaactgaa taaaaatact gtaagagata actacccatt gcctgttata gatgatttga      1980
     ttgattcttt gagagataaa gctgtatttt caattattga tttgaaatct gggttccatc      2040
     agatcaaaat tgcacctgaa tctaccaaat atacttcttt cgtaactcca aagggtcaat      2100
     atgaatattt acgtgtccct tttggattat gtaatgctcc tgcagttttc cagagattta      2160
     taaatagaat ttttttaaaa ttgatagatg atgaagaaat aattgtttat attgatgata      2220
     ttttgatagc tagtgaaagt tttgaaaaac acatagagac tttaggaaaa gtttttcaaa      2280
     ttttgaatga taatttatta gaaattaatt tgagcaaatg tcgttttata tttgaagaaa      2340
     tagattatct gagatatact ataaataaat ttgaaaaaaa attgaacaaa tctcatattg      2400
     aaagtatttc taactttcca acacctaaaa actgtaagga tgttcaaagg ttcttaggcc      2460
     ttactagtta ttttagaaaa tttgtactaa attttgcaac cattgcgaga cctttatata      2520
     gccttttgaa aaaagatgca aaatttatat ttggagagga agaactaaaa gcttttaatt      2580
     ttttgaaaaa cagattgatt tcatcgccaa ttttggcaac atatgatcct catgcagaaa      2640
     cacaacttca ctgtgatgct agctcctatg gattcggagc cattctgctt caaaaaaata      2700
     aaaatgataa taaatttcat cctgttagtt attttagtag gaaaacaaat tatttagaat      2760
     caaaactgca tagctttgaa cttgaaacac tggcagtagt atatgctatt aaaagatttc      2820
     acatttattt ggcaggaatt cattttaaaa tttttacaga ttgtaatgct ttagttcaaa      2880
     ctttgtcaaa aaaagatgtt aatccaaaaa tttgcaggtg ggcattgttt ctggaatgtt      2940
     ataattttga tttagaatat agagattgtt caaaaatgca acatgttgat gctttaagtc      3000
     gtcaagacat ggtagttaaa aaaaatgtag acagtttcaa attcgaccat caaaatataa      3060
     tcgatgaaaa tatagctgaa agtatcaatg ttctcaatga aaatgatata gagcaaaaca      3120
     taatagttgc acaagagcag gatgagaaaa ttattagaat taaagagctt ctggagagat      3180
     ctccttttcc tgattttgag cttacaaatg gcgtactttt caaaaaagat ggtaacaaac      3240
     gtttattagt tgttccgaaa ttgatgattg acaatgtcat taaattaggt catggcaatt      3300
     gtggtcatat tggagtagaa aaaactatgc atgaaataag aaagcaattt tggttcagta      3360
     gaatgaataa gtttgttaaa aattatataa acaattgctt gacttgtatt ttttatagcc      3420
     ctagtggaaa gaaagaaggg tttttaaaaa ttgttgataa aggagataaa ccttttacca      3480
     ctattcactt ggattactat ggacctatac agctaccttc tacaaacaga gcaaagtata      3540
     tattagtcat ggtagatgca tttacaaaat ttactaattt ttttccaaca aaaagtatta      3600
     gctcagaaga aactattgtt catttgacga attacataaa cttctatagt aaaccgaata      3660
     gaattgttac agatagagga tcctgtttta cgtcgagaaa atttaatgat tttatttcaa      3720
     ataatcaaat tgaacatata aaaactgcag cttacacacc tgaagcaaac ggtcaagttg      3780
     aacgtatgaa taaatcactt accccaatgc ttgctaaatt atgtcatgaa tcgtgtaaaa      3840
     aatgggataa attattacca aaagttgaat tcatttttaa taatacatat aacaggtcaa      3900
     taggtaatta tcctagtgtg ttattgttcg gatttcagca aaataatttg ggtagtgaaa      3960
     acaacaacat tgcaaattat gttgctaaca gacaaccaga tctagaaaca tttaatttaa      4020
     caaatattcg cgaaaatgcc cgacaacaaa atttagtcaa tcaaaattat aataaaagac      4080
     aaattgataa gaaaaggaaa aaatgtacaa attataaaga aggtgatttc attgttctga      4140
     aaactggtga aactcataaa ttggctccga aatataaagg tccatataaa attcaaaaaa      4200
     ttttgcctaa cgatagatac gtggtgactg atatagaagg atttcaaatt gcaaatactc      4260
     catttaattc ggtttgttcg ccccaaaaca tgagaaaatg gatgagtgat cacatgtctg      4320
     aaggtagtga tatcgatgag gtcatcgata atgtcaggat gcccgaga                   4368
//
ID   Gypsy-403_AA-LTR repbase;    DNA;    INV; 111 BP.
XX
AC   .
XX
DT   18-JAN-2019 (Rel. 25.07, Created)
DT   18-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-403_;
KW   Gypsy-403_AA-I; Gypsy-403_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-111
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-111
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2100-2100 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 111 BP; 35 A; 16 C; 25 G; 35 T; 0 other;
     tgtagtgaga tcatagtagg ctgacatagg gtacagtagt agttgtttga cgttagggat        60
     gatcattgta taataaaccc ctgaaccatc aagacgtatt ttattactac a                111
//
ID   Gypsy-404_AA-I repbase;    DNA;    INV; 6788 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-404_;
KW   Gypsy-404_AA-I; Gypsy-404_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6788
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6788
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2087-2087 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6788 BP; 1979 A; 1515 C; 1482 G; 1804 T; 8 other;
     cctggcgccc aacgttaaaa atagaaaaag gttctcagga ggggaaaaat atcgtcagat        60
     atttttttct tctgcacgtt ggtggagttt tcttatcgat tagtttcgtg tcctcactgg       120
     tccaattttc tcttgaaaag ktagtggttt ttttttgttt gcattttggg tgctaaattt       180
     gaagcacgtg gtgaagccga ttggttgttg gtcgtaaaaa ggagtgatat aaagcttcga       240
     cttgttcgga ctaaattgta accgacatac aggcttcggg tttctttaag tgtttgacaa       300
     gccccagtaa ttcatattga agatttgttc gaaattaagc acgtcaattc ctactttcgt       360
     taaacactca ttactcaaga atggcccgtc gttcgttagc cggtccggat cttggaacac       420
     tataccatgg cttgcgtcca gatcacctcg acgcaggaga gctaaactat gagctactta       480
     ctgcttcgga atgtagtgat cacagacgat gaatcacgct gtagatgacg gcgtcgactg       540
     aaacaaattt taaaggacga gaaagaaggg catgagttta ttattcatta cgattttgac       600
     ccagaagctg acttggaggt ttgtagaaat attttgaagg aactgcaaaa tattttgagg       660
     tccaaccctg tagatcgtgt gaccttttgt aaatctcgat tactgcacct gggtcatcga       720
     ttagcaatga ttaagaacca ttccacagat caaattagaa cttaaagtaa cgacgagttc       780
     aacaaagtac ttgaactgtt ttcagagtat ttctggactg aggagcgatt tttcacaact       840
     ggtggagaat cgagcggtga ctcagatgcc gcagagggag gaattccgac aaagacgact       900
     gatgcgatgg cttctgtgtc gggttcaacg ggggctatcc ccaaacaacc agatttatcg       960
     aagtttgtca ctaaagacga ctttaaaagt acgatgaccg atattgggag ccttattcag      1020
     gcactatcga gccaattaaa ggggttgaga gaagagatac gaaaacctcc aattctctca      1080
     ccccgaacat ctctcaacaa gacaaatcag ttcgtaatgg acgaagcacc ccaaattccg      1140
     ggggctgcga caaacccatc gagcccggca atcacgacca ctgcaactac aaggacggga      1200
     atatcctatg gaccccctac cagcagtgta tcgctgagag atttcaactt gattggttca      1260
     gctaccgcgt tgcgttcaac agcaaatacc gatgtgccat ttcacttccc aggcggtaaa      1320
     agttcatcac caaatttttt tgaggtgggt tcacaggtcc gacctaccac cacaattcag      1380
     ggtagcattc cttacactcg gccggcgatt aacgcttcgg atgccaatga ttcgttttgt      1440
     cggaaaatta acgaactttc tttcagcccg ttatggatgg gacacaatat tccttcctca      1500
     aacataaatg tccaaaatat tcaaagtaat caaaatttag cggcatcagc accttacagg      1560
     ccatcatcga tgccgccggc aacgtcgcta aacacgcaat cgactatgcc gccgaatact      1620
     ttacagactt tcccctcaag tattcctcct tgtccaatgg cgattccacc ggcaattccg      1680
     ccacgcaaga cgacgcctgt ctcgcagtgg aaagtgaaga aatattctgg tactgatcat      1740
     ggcctagagc tcaacgagtt tctttcccat gttcagcaat tggctatttc cgaacgggcc      1800
     agtgacgctg atttatttga ttcggccatt cacctcgttg agggacccgc tctatgctgg      1860
     tattccacaa aaaggaacca ggggtcactc agagattggc atcattttac ggaggaactg      1920
     aaaagggagt tcaggcaccc ggacctcgat tccgtgcttc gaacaaaaat ctatcagact      1980
     cggcaacaaa aaggggagtc cttccaacaa tattacctcc aaatgagcaa gctgttccag      2040
     gctatgagca cgcccatgtc tgaccccgag aaggtagagg ttttgaagac taatctacga      2100
     tatgatggtc ggaaggcttt agtgggtagg cgtgtatcaa cgcttcacga tttaataact      2160
     attggaaaag atctggatgc gacagatttc tcagcattca caaaggtttt tggttcaaac      2220
     aagaaagaat cttgtgcgat aaacaccgga aatgaaaatc ctccatttac gcggacattc      2280
     gtgaaccgaa atcgtcaaaa tgacttacct gggaatcaat cccagcaaaa attcagtaaa      2340
     ccgaatccca ataacccgaa atctgaaaac aaaccgatcc cttataagaa ctttccggta      2400
     aaaggggcga aaaccgatag tcacccgatt gaacaaaaat ccggcggtag aaaaccgagt      2460
     tttctggcca agctgatatc cgattatagg ccaccaagtg aaggcgaatg ctttaactgt      2520
     ggggatgacc acgagctagt aaaatgtcct attccacgca gggtattttg tagtcaatgc      2580
     gctctaaaag ggtttacagc agacaattgt ccgtactgta taaaaaactc gaatgagaag      2640
     ccctaaaggc gcagggtctt cctttggcgc aaccggagcc atctccggaa ccatggttgc      2700
     ctgatttata tcgcttttac gagcgcagat cagtcaaccc agatgaagat tatgaacacc      2760
     ctcaaatcca taaaataaat ttgaataatg taaacgataa tcgaccacat accaccgtta      2820
     agatttttga tttgtcagta aatgctcttc tagattgtgg tagcaattta tcttttatca      2880
     atgctgcaat tttcaaaaaa ctaagaaatg ttcggctcag aaagccagca tattccgtcg      2940
     aattacagac cgcagatggc tcacctttag aaattctggg agaagttcta attccgttta      3000
     ccttcaatgg taaaacaaga gttttgccta ccctagtggc acccagcctg acgaaggagt      3060
     gtatttgtgg gatggacttc tggcatctct ttcaaattca tctggcgatt gctacaatct      3120
     ccgaagcaga tgaagagaca acatccaaac acaaaaatgc aggaccgaat ttatcaaaag      3180
     cgcagcttga gcggctagaa aacatcaaaa aaatgtttaa ggtagcctac tctgatgcac      3240
     tcgaaactac tcctctctgt gagcaccaca ttgttctcaa agaggaatgt caaacgagca      3300
     aaccaataag actttacccg tatcctatcg caccaaaagt tcagcaaggt ttgtttgctg      3360
     aagtggatag attactcgcc cgaggaataa tcgaggcatc taattcggat tggtcactca      3420
     atatcgtacc aattaaaaaa acatccgggg caatacggct ttgtctcgac gctcgcaagc      3480
     taaatgagag gaccgtacgt gatgcatatc ctctcccgca ccctggacga atacttggcc      3540
     gtttacctcg ggccaattat ctctccacca ttgaccttac cgaggccttt ttgcaaatac      3600
     cgttggcccg agaatcaagg aaattctgtt cgttcagtgt gcaaggaaag gggatgttcc      3660
     agttcacccg ccttccattt ggtttaatca atagcccagc aacgctagcg cgcttgatga      3720
     accgagtatt aggtcagggt gaactggaac cgaatgtctt tgtctacttg gacgacatcg      3780
     tcatagtagc agagacattc gaggagcacg tacggcttct catagaagtt gccagacgct      3840
     tgcgggaagc taatctctcg attaaattgg agaaatcaca tttctgcctg actgaaatcc      3900
     catttctggg ttatgtactt tcttctgaag gtctgagaat ggaccctgag aagataaggc      3960
     ccatagtgga gtatgataga ccatccacta tcacaaaact tcgtcgcttc ataggtatgt      4020
     cgaattacta taggcgattt atcgccgaat acagtaaaat aaccgcgcct cttacagaac      4080
     ttctcaaaac gcaggcgaag actgtgagat ggacgcctga agcggaagaa gcgttccagg      4140
     caatcaaaga aaaactgatt acggctccga ttctagcgag ccctgatttt gatcgggagt      4200
     tcctcattca taccgacgcg agtgatcatg ccgtcgctgg tgttcttaca cagaatttcg      4260
     atggccaaga aagagtaatt gaatattttt ccaagaaact taccacccaa gagcgagctt      4320
     atcacgcaac tgagaaggaa gggctcgcag cgctactatc tattgaacat tttcgcgggt      4380
     atatcgaggg aagccgcttc gtgcttatca ccgattcctc agcgtttacg tacattatgc      4440
     gcacaaaatg gaagacctcc tcgcgactca gtcgctggag tctgtctctc caaatgtatg      4500
     acatgttaat tgtccaccgg cgaggcaagg acaatgtggt gccagatgcg ctttcgcgca      4560
     gcgtgttggc agtgtccgct aaaactccct cttcgtggta ccatgaactg aagctatccg      4620
     tcgagaatag accagaagac tatcccgact ttcgtgtcag taatggtcaa ctgatgaaat      4680
     ttgtatttac caatgacttg gtggaccacc ggtatgattg gaaggttatt ccatgtcccg      4740
     aggctcgtca caatataata caggcctgtc atgacgaatt catgcacatt ggtgttgaga      4800
     aaactttaac taaagtgcgc cagcaatact attggccgaa gatggttagc caaattcgca      4860
     gctacataca aaaatgccag atttgcaagg aaataaagcc tgcaaactca gcaactwccc      4920
     ctcccatggg tgagatgcgc gtaccgtcta ggccgtggca gattattgcc ttagattacg      4980
     tgggcccctt accgcgttcc aaagcgggta atcaatacgt gttagttaca atggacttat      5040
     ttagtaaatg ggtgcagttg cacccttttt cgaaaataag tgccaaaacc ctttgcacgg      5100
     agctcactag gcactggttt tttagaaact cagttccatc aattatcctc tcggataacg      5160
     caactacttt cacttccaaa gagtttgatt ctcttttatc tagatttaaa attacccact      5220
     ggtttacgtc aaagtatcac tcgcaggcaa acccggtcga acgggtgaac cgtgtgatta      5280
     atacctcact tcgctcatac gcgagagaaa atcagcgaga atgggacact cggttagccg      5340
     aggtggaagt agtaataaat tcgacaattc attcatcaac agggtatagt ccatttcgaa      5400
     tcgcaaaagg tgaggaagtg gtgctccagg gagcagacca tgaattgtac gaaaatgaag      5460
     atgaatctac agtcgaggcc cgactggccc gaattagcga agaaatgcca aaattgttcg      5520
     ctttagtgaa gaaaaatctc gccaaagctc acgctgaggc agcgcacacg tacaatttgc      5580
     gkacgcgtaa gcccgcaaag cctttttcag tcgggcaaac cgtatacaag aaaaatttga      5640
     aactctctaa tgcgcaagag ttttacaatt ctaaattagg gagtcaattt ctaccttgta      5700
     ctgtcctggc taaacatgga tcatcttcat atgaattgat ggattctgaa ggccgcaaca      5760
     ttggaatatg gccggcaaac ctattgaaat cagcctaggt catcgaaggt catcgtcttt      5820
     gttmtttgaa atccgctata aaaataatta ttcctcacta tcagttattc gaaagcctaa      5880
     taaagcataa ttaccttagc ctcaacataa tggaacgcct ttwtatactt tccgcggggt      5940
     ataatagaag gatttttaaa gttcgcaggc wtttcctmma tatgctggct ccaacaaatc      6000
     ggataataga tcgatcgata aaattttgaa gtcgcgcgcg cgtttattct catccttaag      6060
     aatcgagaga catcgatgaa ctaaggcaat gaccggaaca gtcccgagat aattattcca      6120
     agtgcgtcgg cacgagtata cgatctaatc gggaacgtga aaacagagtc agttaaaaat      6180
     atgtggacac catgggtgac ccagcgagca cgaagtacta gctctattgc actatctgtg      6240
     accttttgtc tttctttcgt gctacgcgaa cattacttcg gttatctttg tctgaaatct      6300
     gtgttcgttt aaagtatttt gcgtcaccac gctgctttca tcggagggtt cgatcagttt      6360
     gaattgaaac tctgacgcgc gtcgacgcag cacgggtatg ggatccgaga tccgtaggaa      6420
     accacggtcg agtgttagac ctaacaatgg aaaaaagtgt tttgactttg tattgtttta      6480
     gggctccact ggtagcgccc caagccggtt tgtcgtttat gaccaaaacc gacatcgtag      6540
     cccaaatgtt tacgttcatt ttgctccttt tgtgattgtt aaaccaatgt aggcatcgct      6600
     ttgtttagtt tatacatttt cgttatgtgc atgagtatta taagtggcca ctaattaatc      6660
     agagaaaatt gttttgtttt gtttcatttg ttacattaaa ttaattatca acataagtcc      6720
     aatttagtgc atagaacaag aaaagaaaac tatgtaatac gctttttcct ctgaccagtg      6780
     gggggata                                                               6788
//
ID   Gypsy-404_AA-LTR repbase;    DNA;    INV; 999 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-404_;
KW   Gypsy-404_AA-I; Gypsy-404_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-999
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-999
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2101-2101 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 999 BP; 249 A; 271 C; 266 G; 211 T; 2 other;
     tgttaccggc gggtaacatt tgcttgcaat taattacgag tgctaggaaa ttagggaata        60
     tattgtgaag ctaaagcgaa accctaacgg tcaattcata cttcccgccg gggcgtgatg       120
     cgtatgaaga gcaaaactgg gtgcatgagt gtggtgggtg atcgcctcca ctgaacgata       180
     gctgggtgtg ggcggaaata gaggcacgag cgagtattcg gttaattgtg gagggaaaag       240
     gcgcgatcgg atgagattga ggagtcagtc gataaccaac aggcaatcga gcacaaggct       300
     tctaagccca agcaacaaac tcggagtgat aataaccacc cacgtgtgtc aaggagaaac       360
     gctgtgttaa gtattagcgt ccgatttcta tcgaaccgtc ggtcatcccc ggggtcgcaa       420
     agtacgttcc ggccgactag acccgcaaac taagagctac ggccgtcatc tacmtagcat       480
     ccatttgcgg agaggtgctc tatcacccga gaacggggac ctcgtgcgga attccacgtt       540
     aaggctaatc aagtcctgag cgctgtcatt accaccttcg gaaagcgatc gacccttctt       600
     cgtgccatcc agggccccaa tggtgccgct gccgctgttc acgcctccca cctccgccgc       660
     cacaccgttc atcatcgaag ccacccattc tgtcgccgta gagatcctcc atsaaagcca       720
     ccccctcgtc atcgtcggga attccctggc cagtgaatca cagggctatt tacaacgcct       780
     aataaaccgg ttgaccgtaa gtacctgggt taaatttagg ttcctgtact ccgaaaactc       840
     ccccggtgca cacaacaccc tgagacccgg aaccagaaga ggccgtgagt gcccaccctg       900
     gaggctgccg ttggctctag accagcagcc tggggctgta ggccggtttc cttctgaaac       960
     cgagcggtga ggttccgggg tcaaaaaaga ggtcttata                              999
//
ID   Gypsy-405_AA-I repbase;    DNA;    INV; 6614 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-405_;
KW   Gypsy-405_AA-I; Gypsy-405_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6614
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6614
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2088-2088 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6614 BP; 1865 A; 1533 C; 1485 G; 1731 T; 0 other;
     ctggcgccca acgtgaatat cctttaagag gatctcagga gggaaaatat atcctcggat        60
     atatttttct tatgtgcgtt gggggagttt tcgagtaact ttcaattcct ctaaaatcaa       120
     tccactctgg tcgcattatt cccaagaaat cagtggcact ttttgtagta tcgcggtggt       180
     ctaattcagc cacgtggcaa aaccgattat tcctaactcc ttaacacgag tgatcaacca       240
     acaagttcat ttccaattat caaaaaatca tcaccggtag tgcaaaataa tttcgggtga       300
     gaccggaatt gaaaaagcta atagatttca tcctttttga attgtataat cactctgctt       360
     tccacgtttg attcctcact gttttgaaaa tgccacgatt atcggtttcg ggtccagatt       420
     ttgggatgct ctaccgcggc atgcgtgtgg accatctcga ccccggagag ctcgactacg       480
     agttgttttt gcgaaatgta gtaatagggg atgatgagtc tcgggcaaaa cgccgacgta       540
     ggttgcgcca gatcctcaag gacgagagtg atgggcatga gttcatcgtt cactatgatc       600
     tagatccaga aatggatctc gatagttgca agacaatttt ttcagtactc tcacgaactc       660
     tttctacgga gccgcgagca caagtagagt tttgtcgatc acgtctattg catctgggtc       720
     accgccttgc ggttattaaa aaccatgcgg tgggagaatt gaaaaccaag gccgaagaag       780
     agtttacaaa agtactgaat ttgttttcgg aatatttttg gacagaacag gagttttacg       840
     caattggtgg ggaatctgag tctgagtcag agaggctctt agatgaagca atagggggag       900
     ttgatgtgcc gacatcgacc tcaaactcag ccacaggagc cattccgaag ctaccagact       960
     catctcagtt cgtttcaaag tcagacttca gtcgtgcgat gacggacata ggtagcctca      1020
     ttaaagcgct cgcttcacag gtgagtggac tgaaggagga aattcgtaga caacgacctc      1080
     ctccgccagt tccaccaagg ccgtcctcgg tgcacctaaa ttctacaaat ccttttcgaa      1140
     atgatgatgt tcgtcccatt caatcggcga ctacttcgtc gcgatggcta ggatcagcgg      1200
     acatccgatc gagtcgtggg actacgatcc caacctcgac tatcagcggt agtgtcccat      1260
     atccaccacc cgtaccccca aacgaaaatc ccaatggctc ttttcggcgt cggatggatg      1320
     aactttcatt cagtccattc ggagtggcta attgtaacca atctccaaat cttcagggta      1380
     atattcctct acgccaatca tcggggttag ctgtgacctc ttcatcaccc gttgcaccgt      1440
     tgcgtaaaat gactcccatt tcgcaatgga aagtgagaaa atactccgga agtgatcatg      1500
     gcctgggtct caacgagttc ttgtcccata ttgaacagct tgcgatttca gaacatgcta      1560
     ccgaaatcga cctattcgat tcagcggtgc atctgttcga aggtccagcg ttaagctggt      1620
     acacctcgtg cagaaatcaa cggatgctgc aaaattggcg tcagttggtg caggagctga      1680
     aaaatgagtt ccgacaccct gatctcgatt cagttctacg cacaaaaatt taccaaacac      1740
     gtcagcaaaa gggagagtct tttcagcagt actatctgca aatgaataag cttttccaag      1800
     caatgagtca tcccatgacg gaggttgaaa aggtcgaggt gctcaaaacc aatttgagat      1860
     acgacggtcg caaggccttg gtaggaaaga atatcgctac actccgggac ttgctaacca      1920
     taggcaaaga cttagatgcg acagattttt ccgcgtttac caaagttttt gcctcgccta      1980
     agagagaaaa ttgtgcaatt gactttgcca atagaaacaa tacaggtagt aagacatttg      2040
     tcaatcaaaa tcgtcaaaag gctcagcaac aaaatcagaa gaatcacaag cccaatgaga      2100
     acaacgccaa aaatgacccc agatctctcc cacccaataa gccgaaccaa ttggagaaag      2160
     ccaagagatc agagggctct cctccagatt caaaacctgg gccaagtaaa ccaagtgctc      2220
     ttctaaaact agtttctaat tattctccac ccgaggaggg tcagtgctac aattgtagag      2280
     attatcataa tctctcggaa tgtccaattc ccagaagagt gttctgtaat agatgtgctt      2340
     tgattgggtt caccacaaac aactgcccgt actgtttaaa aaacgggctg gggaagccct      2400
     aaagccgcag ggacttccgg ctgcgcgatc gatagatgcc gcagaatctt ggttgccaga      2460
     tctctatcaa ttctatgaac agagatcgga cgacgaagat gaagaaagcg ttctacccca      2520
     gattcataaa ataaccctga acagtatggc agatgatcga ccacatgccc aactccgaat      2580
     tttcgacatt tatgtcaacg ctcttcttga ctgtggaagc aacttgtcct tcatcaactc      2640
     aaccatcttc cgtaagctgc ataacgttaa gctgcgggaa ccctccttcc cggtagatct      2700
     tcgaacggca gatgggtctc cattagaaat tcttggcgaa gtcctcatcc catatacttt      2760
     taatggtaag acgagggtgt tgcctacact agtagctcct catctgacca aagattgtat      2820
     ctgtgggatg gatttttgga aaatttttag aattaaccca accatctcaa tggttaccca      2880
     gaacggggca accgagatac ccgatcggga aatctcttcg ccaaatctga ctgattcaca      2940
     aacacagcga ttggatggag taaaacagct gttcaaaaca gcggctctta atactctgga      3000
     tgctacacca ctttgcgagc acaatattgt cttgaaagaa gagtgcagag acaacaaacc      3060
     gatccgctta tatccttatc ccatagctcc gaaaatacag gcgggtttat tcgctgaaat      3120
     cgatcggttg ctagacactg ggataatcga agaatctaac tccgattggt ctttgaacat      3180
     agttccaatt cggaaagcct cgggggctat acgtctttgt ctcgacgctc gtaaactcaa      3240
     tgagaggacc gtacgtgacg cctatcccct cccacaccct ggacgcatac ttggacgact      3300
     tcctcgcgca aactttcttt caacaatcga cctcacggag gcctttttac agatcccgtt      3360
     ggctaaaagg tcacggaaat attgtgcgtt cagtgtgcaa gggaagggga tgttccagtt      3420
     cacccggctt ccattcggtt tgatcaatag cccagccaca ctggctcgat tgatgaaccg      3480
     agtgttaggt catggtgcac tggaaccgaa tgtcttcgtt tacttagacg atatcgttat      3540
     agtaacggag acattcgagg aacacttacg gcttctcaag gaggtggcga gacggttgag      3600
     agaggcgaac ctttcaatca aaatcgaaaa atctcacttt tgcctgagtg aaataccctt      3660
     cttggggtac actctttcct ctcagggtct gagaataaat cctgagaaga taagaccgat      3720
     tgtagaatat gaacgcccta caacgatcac aaaacttcgc cgctttctcg ggatgtcaaa      3780
     ctattatcgg aggtttattc ccgactatag taagacgacc gcagccctca cagagcttct      3840
     aaagacaaca tcgaagtcag ttagatggac tccggaggcg gaagaggctt tccaggcaat      3900
     aaaagagaag ttaataacgt cccccgtgct ttgtagtccc gattttgaac aagaattcat      3960
     tttacacacc gacgcgagcg atcacgccgt cgctggggta ttaacccaaa atgtaaataa      4020
     tcaggagcga gtgatcgagt acttttctaa aaagctgtcc actcaagagc gagcctatca      4080
     tgccaccgag aaggagggtc tggcggctct gttgtccata gaacattttc gaggatacat      4140
     tgagggcagt cattttgtcc tagttaccga ttcctccgcg ctaacattta tcatgcgtac      4200
     aaagtggaag acgtcctcac gactcagtcg ttggagcctt tcacttcaaa tgtacgacat      4260
     gacgattgta caccgccgcg gaaaagacaa cgttgtgccc gatgcacttt cccgtagcgt      4320
     aatggcaata tcgagcagtg cttcatcttc ttggtacagt gatttaaaac tgtcggtttt      4380
     gaacagacct gacgattacc ccgatttccg agttgacgga gatgaactta agaaattcgt      4440
     cttcaatcac gatctttccg atcaccgata cgattggaaa attattccaa gtcctgaatc      4500
     gcgaacggcg atacttaagg catgtcacga tgatttcatg cacgtcggcg cggacaaaac      4560
     actcgctaaa gttcgtcaaa actactactg gcccaaaatg gttagccaaa ttcgatccta      4620
     cattcaaaag tgtacggttt gtaaaatgat taagccaccc aattcatcta cgacaccccc      4680
     gatgggtgat atgcgacttc cagcgagacc gtggcaaata atcgctatcg atttcatcgg      4740
     tccgttgccg cgttctaaat cgggcaacca atatgtcttg gtcaccttag atctattctc      4800
     aaaatgggtt caactgcacc ccttctctaa aatcagtgcg aaaacgctct gcgttgaact      4860
     gacgcgtcat tggttccatc ggaactcggt tcccgcgata atattatccg ataatgccac      4920
     aactttcact tcgaaagagt ttaaatcgat gcttgatcgg ttcaagatca agcactggct      4980
     atcgtcccgg caccactctc aggccaaccc tgtagagcga gtaaatcggg cgataaacac      5040
     gtctattcgc tcatacgcac gagacaacca acgtgaatgg gacacgcgac tgtcggaagt      5100
     tgaggtggta attaattcca cagttcactc ctctactggc tttaccccgt ttcgggtggc      5160
     gaggggagag gaagtagttc tcgacggaaa cgagcacagc aactacgaaa atgaagacga      5220
     aacgtctcta gaggcgcgcc tagcacgcat taaagaagag tcaccaaaaa tgttcaattt      5280
     agtccgaaaa aatctcgaga aagcctacag agaggcttcg cgcacatata atttgagagt      5340
     tcgccagcct gctaaaccat ttgcggttgg ggcaaccgtt tacaaaaaaa atacgaaaat      5400
     ctcaaatgcc aacgaatttt acaatgcaaa attagggcca cagttcctac cttgcaaaat      5460
     tgtggccaag catgggtcgt catcatacga gctcgttgat cagggaggaa agaacatcgg      5520
     tgtttggccg gcgtgcttac tgaagtcggc ttaaatcgct tccaattctt cgggcaactg      5580
     taacgacccc agtctctgaa tggtagagct gtaaatattg aattgaaatt tgacctttta      5640
     atgacccctt gaaggcttga ccttttcatt ggaatctcac cttcggcctg aaataagcgt      5700
     tttagtctgt tctactttcc gcggagtaag aacgagactc gctgagtctg taggcatcac      5760
     tgagtaaatt aattccattt aataacatca aagtaaaact tacggagacg tccgaaaact      5820
     tactctcgcg cgaccgcact tcgatcctta ccaatcaagg attaccggca aactgatcat      5880
     ttgctgcgtc aaagcgtatg tagattctaa aggtcagtaa cctgaatcac aattcgtgaa      5940
     actgcacgaa agtccaattt gaattgaatg ttttcaaagt attggtgaat gccccggtgg      6000
     ggcgaatttg gtccaaacaa tccacaggac aaagacgaaa aacacgaaag tgtccatggt      6060
     ctcgcaacgg attggtgttg gcaagaaagt tttttccgat ggataggata ggcccacagt      6120
     agtggaagag ctatcaattt agtttattcg gcaccgtcgt ccgctcgaca tgtgattatc      6180
     cggcgcggcg cgcatttgtt ggttctctgg cccggtcggc gtagtgcgta ttgcgtggaa      6240
     agatgagtgt cgcgtattgt tcattttgtt tgggagcttc tccgaacaag ccccaatttg      6300
     ttttgtgcta ttgttttgat tggatgatgg ttggcgattt tgaccaatat agtaaatata      6360
     atctactcgt gatttggagg agagaataat gcatgttttg ttccgatata gttagtttac      6420
     taatgatgat gcagttacat tgttgcccac tgatttcgag agaatggtgt tttgctttgt      6480
     ttttttttgg tgttataatt taaatgataa ttctactgaa ctatccaaaa agtgatatac      6540
     tcgtaggttg ccgactacaa atgttattat gtttagtgct aaacgcttca ctttacccga      6600
     ccaggggggg gata                                                        6614
//
ID   Gypsy-405_AA-LTR repbase;    DNA;    INV; 1104 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-405_;
KW   Gypsy-405_AA-I; Gypsy-405_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1104
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1104
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2102-2102 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1104 BP; 268 A; 314 C; 272 G; 250 T; 0 other;
     tgttaccggc gggtaccatt gcaatgtttt tgctagtttt tttttttgtg tggaattagg        60
     gagttgaaat tgttaagcag tgtttcaacg gtgggtttaa acggtgcgat tgtatgtcga       120
     catgtgaaaa ttgcgttcgg cggatgaatg gcctagtaat tggagcgcgt gaagttggct       180
     aagcgagatg accgcggaaa cagaaaaacc gccagttcaa gggaaggtgc gaaagcgtcg       240
     acagtggttg atgatcagtt gtggtttaga gctcgaagta ttaagtggct tgtgcaaaac       300
     gttggaaaag tttttttcgc caccgcgtgg catctccaaa agcacctttt cgatccccgg       360
     aaattactgt caccggaccg gatagcaatc gtggtcgtgt agacctcgac aaataccgcc       420
     cagttgtagg tccacagtgc ttcgaagggc cgaattccca tcggctggca tctttggtag       480
     accctggaag cctgtaagat cggagccgct acgcacccga acaaaatcaa agagctgctt       540
     ttctctgacc gccacgccgc ccaacaccag ctggtttccc tccccgtcac accggacagg       600
     cagccccgaa agaagcacca ttccgggttg gtccaccatc accaccagcg accaaaatct       660
     acccgctaca ccagccagca tatcgcggca gcacgcaggg ccgctcccac cggcagttcg       720
     catcatcaag ggcccagggc cgcactcatc ttcgccatca tcagtcggtt cggcccgcct       780
     tcaacttaac aacccgtcgc atcccttcgg gttgcagtac cgatctccag ctcctcgacg       840
     cccattacca acaagcatcc gtggcccaat actatcgtcc tcaaaagctc gaatacaagg       900
     taaatccaat tgataggtat tccacacact ctccgaacat ccgaatcctc cccgcgccaa       960
     aaacgccctg agacccggaa ccaaaagagg ttttaggtac ccaccccatt agactgccgt      1020
     ggctaagacc agtagtctgg ggcttttgct ggttcccttc tggagctgag cggttccggg      1080
     gccaccaaat tgtagagtct tata                                             1104
//
ID   Gypsy-406_AA-I repbase;    DNA;    INV; 4451 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-406_;
KW   Gypsy-406_AA-I; Gypsy-406_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4451
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4451
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2089-2089 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4451 BP; 1635 A; 821 C; 892 G; 1102 T; 1 other;
     tggtgtcaga tccatagcaa caggaataac agaaaaaaaa tggaagagct gaaattgcaa        60
     attatcgaat tgcaaaatgc tttgcgggaa attaaggagc gcggaaatgg tccggtaaca       120
     agcgctggca ttccagaggc ccctgcaata ttcctttcga gcccaagtat ccctacaccg       180
     gaggccattg acattcatgg agatatttgc caaagtgtca agttcttcaa atcatcatgg       240
     gaatattact gtatagcgag caaccttcaa ccaggcccat gaaacaacaa attgcaaccc       300
     ttctgtcgtg cattgggaaa gattgtttga agctttatca gaacttaccg ttaagtgttg       360
     aagacaacca atcttgtgaa acgatattgt ctgctttaga agcacatcta ctcccgaaga       420
     taaataagcg ttacgagaga gctattttca acagcgccgt tcaagaacaa gaagaaaata       480
     tagaccaata tatacatcgt ttgcgtgggc tgatcaagaa ttgtcaatac ggagatatgc       540
     aagatgaact attgttggac agaatcgtgg tgtctgtaag agacgtgaga ctgcgccaac       600
     gtctttggga gaaccaagaa attacgttga acgaagcaat acaaaaatgt cgtgcagctg       660
     aacttacaga aaaacagatg aaacaactca attccgattc caagatgtca attgaagcac       720
     atgtcgataa aatccagaac aaaggaaaaa gatcaaacta taccgcatcg tacaagaaat       780
     ctaaatgcaa ttactgtgga tacgaacacg caagagaaaa agagaaatgt ccagcgaatg       840
     ggaagaaatg ccttcaatgc ggattgatga accactttgc tagcgtatgc agatcgaaac       900
     aatcaaataa tgaagtaaaa ctgatcgaag aaagttatga gaacatcctc gcagtccgaa       960
     atgaatcacc aacccagctt cacgcttcgt tattcttcgt cactggcgat aagtgtgaga      1020
     aagttaaatg ccaactagat actggagcgt cctgtaatgt gatgggaata tcctgtttta      1080
     ccagaatctc agctaggaaa gaactgaaaa ctacaacgac aaagcttaga gtttatggtg      1140
     gaggtgtaat aataccagaa ggtcgatgtg aactcacagt tattcaagat ggtcaagagt      1200
     caacgctgat gttcgaagtg gtaggaggtg aatacaagga gtatcttccg ttattatcgt      1260
     tacaaacatg tttgaaattc ggattcatca ctgtaaacaa ggaagctatc aacacgatat      1320
     tctcaaataa aagcggagca gaacaaataa tcgctgaatt tccggacgta tttgatggct      1380
     taggttgtgt agaaggagaa gtcagcttag aaatcgataa atcagttcca cccaaacagc      1440
     aaattccaag acgagttcct caaaaattgc gtgctgagat gaaaaagcag cttgatgaga      1500
     tggaaaatat gggtgttatt gcaaaggtaa atgaatattc agagtggact agtaacattc      1560
     ttatagtacg acgcaatgac aaactgagac tctgcattga tcccgtggac ttaaataagg      1620
     cattgttaga cgttaaatat caaattccga aactagaaga aattttacca gagttacatc      1680
     aagcaaaagt attcagctgt cttgatgcaa agaaaggatt ttggaacttg aaactagacg      1740
     agagaagtag caaattgacc acgtttgtaa caccatttgg caattaccgt tttcttcgta      1800
     tgccgttcgg aattaagcca gctatggaaa tatatcaaaa aagacaacat ttactacttc      1860
     aaggattaaa aggagttgtc tgtatcgctg atgacatttt agtatttgga tctggagaaa      1920
     ctactgaaga agcaattatt gatcacgaca aaaatttaag aaatctacta gttcgtatac      1980
     gaaaagaaaa tttgaaactt aatcgagaca aactgcgttt gtgtcaagac tctgtgaaat      2040
     ttttcggtca tattatcagc aatcaaggaa taatgcccga tccagacaaa gtgaaagcaa      2100
     tacgagagat gccaaaaccg gagaataagg acgacgtgct acgctttcta ggaatggtta      2160
     cttatctttc aaaattcata ccaaacctat ctcaaagttc ggaaccactg cgacgattag      2220
     tgacagctga tcagtttgaa tggaatcaaa atcaccaaga taattttgac agcataaaga      2280
     aattaattag ctcggacata ctactaagtt tctacgatgt taacaagccc ttaaaaattc      2340
     aaacagatgc atcatcaaaa gcaattgggt gtaccctgat gcaagaagga aaaccgattt      2400
     cgtatgcatc aagaaccctt tcgtctacag aagcaaatta cgcacaaatt gaaaaagaat      2460
     gtttggcaat tgtttatgct tgcacaaagt ttgatcagta cctctgtgga aaacatgaca      2520
     tcattattga aacagatcat gagccactcg taacaatttt caagaaaccc ttatttgtgg      2580
     ctccacgtag aattcagaaa atgctgatgg tccttcaacg ttacaatttt cggctaatct      2640
     acaaaaaagg cacggaaatg atcatagccg atactctctc aagagctcct gcaaatagtt      2700
     tagatgatcc ccactctttt gaagtctatc gtttggattt ggaacaaacc gatctgaccg      2760
     aagatttacg aatatcgacg ccaacaatga aaaaaatcat actggagtca gaaactgatg      2820
     aagaaattgt acttctcaaa tcacttatct caaaaggatg gccgacaaaa tacagcgaag      2880
     tcagcgattt ggcgaagaga tatttcaagt ttcgtgagca gttaaccatc tacaacggac      2940
     ttgttttgaa aggagacaga attctggtac ctaaaattat gcgccgtttt gtactggata      3000
     ccctccacaa aagtcatcaa ggtatcgaag ccactcaaaa actatctaga gaatgtgtgt      3060
     tctggccagg aatatcagag caaataaaag atcttgtctc gcaatgtgaa gtctgtttga      3120
     aaaactccac atctcaaaag aaacaagtaa tgcaatctac tgaaatccca agtttgcctt      3180
     tcgaagtagt aagtatggac gtaatggaaa tacgctggaa atcgaagcct ttgcgactgt      3240
     tggtgactgt tgaccactat tcagattttt tcgaagtaga cgaaatgaaa gacttatcat      3300
     gcaaaacagt ggtaaatata tgtaggaaaa atttcagtag acacggtata ccttcaactg      3360
     ttatatcaga caatggaacc tgtttcactg gtgctgaatt tcaaaaattc aaacaagatt      3420
     ggaagttcga acataaaact tcaagcccac accatcctca aggtaatggg aaagcagaat      3480
     cagccgtaaa aatatgtaaa aatttgttga agaaatgtga agatagcgag acggatttct      3540
     atgaagctct attgatgtgg agaaacacgc caaataaaat tgacagtagc ccaactcaac      3600
     gattatttgc tagacgaaca agaactcacc ttccaacgat tccatcagca ttgaagccaa      3660
     aaatagaaga gagcgtaagt gcaaaaatag cagaaagaag atcgaaaaca gcaggacatt      3720
     acgacaaagg cactgttaat ctaagagatc ttgaaaatga tgaaagagtt tatgcgaaaa      3780
     tatatccaac aaaacataaa tggacaaact gtagaatatt ataccgacga gacgacagat      3840
     cttattggat agttacagac gataaccgag tctatttaag aaatcgtatt ttcattaggc      3900
     ctgcaagaaa tactatacca agtgaggcag aaccagttcc gatcgagcaa aatttcgatg      3960
     tccatgatag attaccacat tcacatcaaa aacgaaacga aatattcgat gatattttcg      4020
     atgaaccaca acaaccatca aacaaagatt atccaacaac catgcccgtg ccagtcgacg      4080
     aacaggaaga aatcgtgatt agttcagaac aaaacaatga aagcgaactc catggtagtg      4140
     ctgaggactk gaatggaaat gataatgatt gtagtacaaa tcaaaataac gacacacgtg      4200
     atgaaacaac gaatggtaca tctacggtat cgcaaaatga agaagaaatc gttgaacctg      4260
     cattaagaga ttctcatgaa acagatgaag agacctttac atcagaagaa gaaacaccta      4320
     cttcagagga tgcgacatca gtcccagatg aaccatctgt tatagaagat tcatcgttca      4380
     gtacccgata tccgttaaga aatagactaa gagatttttt caattatcgc taacaatcat      4440
     ggaggaggag a                                                           4451
//
ID   Gypsy-406_AA-LTR repbase;    DNA;    INV; 96 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-406_;
KW   Gypsy-406_AA-I; Gypsy-406_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-96
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-96
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2103-2103 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 96 BP; 31 A; 17 C; 15 G; 33 T; 0 other;
     tgttatagta ttaatcgtag tagtctcatg agttgaataa acagttatcc gttactacct        60
     gtagagaaca gtcgccttat ttcctacatt aaaaca                                  96
//
ID   Gypsy-407_AA-I repbase;    DNA;    INV; 6591 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-407_;
KW   Gypsy-407_AA-I; Gypsy-407_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6591
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6591
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2090-2090 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6591 BP; 2419 A; 1435 C; 1050 G; 1687 T; 0 other;
     ggcgcccgaa aacgggaccc tttttaccca gtaatcgtat aagtgtttaa tcacgaagct        60
     gtcttcagcc tccggatagg atcctcatcg accggaccca gctccactcg ctatcaaatt       120
     ggcgacttgc gtcttcgagg aacggcgaaa agacacactg ggaaaaggaa cacccgctac       180
     cccgcatcag tggccacaag aagtcgaatc gctgccaccg acagggaaat gaacaccctg       240
     cttctctatt tgtaagtaaa tactaaacat agaaagaaat tagattaaga ttaacacgac       300
     actgcttgcc gttagtgtct taaaccataa tccctactaa ttcagagtga ctaggccgga       360
     ccaaccgtaa ccgaatcact gaatatcaca gattaatccg aaaaactaac cctaaaaact       420
     acttcaaaag ataaccgaga acaaaccgcg agtgacagtg aagtgaagtg ctagtgaaat       480
     cttagttaga aaaaaatggc aaacccacca aatccaatcc ctcttttgca acctgcacgt       540
     ttaacggtga gaaataattc ttcaaatcca aatgccaccc aggcaacaca aagatatgca       600
     atcgatgctt ctgttagctt tttagataga ggtaaaatcc cgagtattgt gaaggattta       660
     cctgagttca atggaaatgc acgagattta tccacttgga ttctcgatgt tgaagattgc       720
     ctggaattgt ttgatgattt ccgggacagt ttcgaatatc atctagtgat gaaaacagtc       780
     aggagaaaga taaaaaacga agcaaatgac attttaattt caaacaatac atccaacaat       840
     tgggatgaaa tcaaagaggt tctgcggtta tattatgccg ataaacggga cctcatgaca       900
     ctcgacaacc aattgaaaac catggttcga aggcaaaatg aaaccatcga aacttattac       960
     agtagagtgc gagaaatgat caccttgatc agctcagcca tctctacaga cgaaacttgg      1020
     aaaggacatg aggccgcctt gataaaactg tacaatatga tggcgctaga cacattcatt      1080
     agaggtctag gtgaaccgct atcacttttt tgcaaaaatt acaaaccgaa atcccttgct      1140
     tcagcctatc attattgtgt tgagttccta aatttgaacg ctcgcaatgc acccttcaaa      1200
     tcacatcctc taccacctat cccagctcct cgaggtaaca ttccggtacc accgccaaaa      1260
     cctattcaaa ggcatcctca acaagcacca ccgcctccac ccagaaacaa ttatcagccc      1320
     ccaccaataa atttcagaca accaccccct ttccaaacac aaactcaaaa caaaccctac      1380
     attcaaaacc aaactccatt tagagcgtat gctcaaaact cgcctaacgt ctttgctcct      1440
     aacagaagct tttatcaaca gcaacccaag cctgaaccaa tggacgttga tagatcgatc      1500
     cattctcgta tgttaaatta cggaaataga ccaaatttca aaatgtctag accaataacc      1560
     gaatcaatgc aagctcataa ccccccgaca aaacgagttg ctcatcaact ggaagattgt      1620
     tcaagagagg aatatgacga aataagagaa tacaatttca accctcccgc agaattatca      1680
     gatgctttag aaccacaaga accagttgag cctcaagaag gtgaatctga aaacgagcca      1740
     aatgtgaatt ttttagagaa cgatctggaa tgggtgagca aatggttcga ttaaaaccta      1800
     ccatctctcc ccttccatac attaaaatcc ctactactag aggtgaaatg aagtttctga      1860
     ttgactgtgg agctaacgta aatttaattt caaaaaaatg ggcataccac tccggtaaac      1920
     ccgtattcaa aattccagat gcacccgtaa aaggagtaac cggtaaaggt tttatttccg      1980
     aaatgatgca tctttcatta tttgagccag taagaaaaga accttcagaa tttttggttt      2040
     ttgacttcca taccttcttt gacggtttaa taggaaccga atttatattt ggggaaaact      2100
     acaatctcat atctagttta tcgactttcc aagtgttcgg taacgacaca acccttaaca      2160
     ttcctttgca attttactac ccttcaccga gcccacgcaa aattaaccac gttaaccaaa      2220
     cttccgatat tagaacttca catctcaccg aagaagaaaa aaatgcttta ctaccaattt      2280
     tgaattctat caaacaagtt tttcacaatc cggacaacaa attatcgtgt acaactaatg      2340
     ttgaatgcga tatacgcacg gaagatgata tccccatcta ccaaaaatct tatccttacc      2400
     ccgtcgctta taaagaagaa gttaatgcac aaattacaaa actattagat gatggaatca      2460
     ttcgaccatc cagatctcca tggaactcac cagtttggat tgttccaaag aagatggatg      2520
     cgtctggtaa aaacaaattc agacttgtaa tagactttag aaaactaaat cagaagacaa      2580
     tatctgacaa atacccgatg ccggaaattt ctaatatact agatcagctt ggaggtaacc      2640
     aatactttac tactttagat ttagcctctg ggtttcatca aataaagatg aatcctagag      2700
     atgttgaaaa aacagcattt tccgttaacc aaggcaaata cgaatttgtt cgtatgccat      2760
     ttggtttaaa aaatgctcca gcgattttcc aaagggcaat ggatgacgtt ttacgtgaac      2820
     acattggcaa aatttgttat gtgtacatgg acgatgtcgt tgtatttgga aaaacattgg      2880
     aagaagctac aaagaatttg aaaataattt taaaaacatt acaggatgca aatttgaaag      2940
     tgcaacctga taaatctgaa tttttgaaaa aatctgttga atttctcgga tacgtaatta      3000
     caaaagacgg aataaaaccg aacccaaaga aaatagaatc aatagaaaaa tggcctgaac      3060
     ctaaaacagt taaagaatta agaagttttt tgggattaat tggatactac cgaagatttg      3120
     taaaagattt cgctaaaata gcaaaacctc ttacaaatct cttcagaggg gagagagacc      3180
     cttcatctaa caaaaaaatt acctttggag atacagagaa ggaagctttt gaacaactca      3240
     aaaccatact tacttccagc gatatattaa cgtacccaag ctttgataaa aaatttctta      3300
     ttacgacaga tgcttctaat tacgctatag gagcagttct tagccaaggt gaaataggga      3360
     aagacaaacc aattcacttc gcttctcgga cgctgaacag aaccgaggaa aacttctcag      3420
     ctacagaaaa agaaatgctt gccatctact gggctttgaa agttttcagg aactacattt      3480
     acggtcaaaa atttgtagta ataacagatc accaacccct aactttctct ttatcttcaa      3540
     agaacactaa cgctaaatta aaacgttgga aatcgtattt ggaggaacac gattaccaaa      3600
     tcatatataa acctggacgg acaaatgttg tagcggatgc attgagtcga attcaaatta      3660
     attctctcac tccaacacaa cattcggccg aagacgatga cagtaactat attatatcga      3720
     ctgaagcccc acttaacgca tttagacttc aaattataat tgagcatacc aaaattaatc      3780
     ccgaaacgat agttacgact cccttcccag gttataaaag aattttgata aaacggactc      3840
     aatttacgga acaagtactt actaccattt taaaaaactt ttttgtacct agtaaactca      3900
     ttggcctaca tacatctgaa accatcctcg gacaacttca agaagtatac agaaaatatt      3960
     ttagcagagc aaatttatta aaaatccgat tcacacaaaa tctccttatt gatgtaaccg      4020
     accccaatga acaagataaa ttaattgaaa atactcacga aagagcacat cgaggcatca      4080
     acgagaacaa gcaacaaatt ttacgcacac attattttcc aaaactctct gctaaagtga      4140
     aagatttcat acgaacctgt gacacttgca atacaacgaa atacgacaga caccctttaa      4200
     aaatccatat ccaagaaact cctatcccta accatcctta cgatatcatt catatagata      4260
     tttaccagat tgacaacaat tactttttgt ccagcctaga caagttttca aaatttggaa      4320
     gaatgatacc tattaaatca cgccatgttg ttcatattcg tcgagcattt gaagaaacca      4380
     taacgtctaa tatcattcct tcagccgtga caacggataa cgagaaagca tttctgtcgc      4440
     cggaaataaa aggcattatg ttagatctga atattcaagc atacgttacc cccagcaata      4500
     aatctgaagt taatggacag gttgaacgat ttcattcaac tatcactgag ttatacagaa      4560
     ttcaaaaatc cctaaaccca tcttatcctt gtcgaagatt gatggcaata tccgtgaaca      4620
     aatataacga cacaattcat tcaaccaccg ggaaaactcc aaaagaaatt cttttcggta      4680
     aatccagtaa tcctgtccct attgaagaaa ttgaccatgt aagaaataga cgctacgacg      4740
     aagttattgt acaattaaaa gcgaaacaag aaaaactttt ggaaacacat aacaggaaaa      4800
     gacaagagcc cccagattta gaaacagggc aagagattct tgtaaaagac aaaattttca      4860
     aaagcaaaca taaacctctc ttcaaaaaac attttgtcca aaccaatcaa agagtaacgg      4920
     taagaaacga gaaaaatcaa aatttacata agtcaaacat aaagaatatc aacatacgaa      4980
     atcaaaactt gtaagattcc agcgaaccaa taatccttcc tctaacaccg caccattctt      5040
     ttcattccag cataccccct atccttgcat ccctgcaaat ccacaacctg gataaaaatc      5100
     ccattgctat agtaaaatta agaaacggaa gaatattaga aggctacaca aaattcatac      5160
     acactgtcaa tgtgacgtct attcaaacta ctgtaaccta ccttgaagat attgtaaatg      5220
     aaaaaaattg ttctaatcca atacttactc atagaatcga gacattaaaa aataacctag      5280
     cacaagtaaa acccttaaat agcaaaagag tcagaagatg ggacgcttta ggtaaagcat      5340
     ggaaatggat ggctggatct cctgattcag acgacctcaa aaatataaat agttcgataa      5400
     atcaccttgt tgacaataat aacgatcaag tagaaatcaa cgaaaaatta gagaaaacac      5460
     ttacaaattt gactatctat ttgaatgaca taagcctctt agattctcaa aattttaacg      5520
     aaatatcaaa ggagttagat tcactgaaaa ttatgtttca tctagatcta ataaatgacg      5580
     aaatcgaagc tattagaaat gcaataatat tttcaaaatt gaatatttta aataacaaat      5640
     tgttaagtcc aacagaaacc gaagagatta catccagatt agagacacaa ggaattcacc      5700
     agaacctgat agatgaagcc ttgcagttcg ctaccacatc agtcgtcacc aacggagaag      5760
     tcatcttgta cattgtaggc atccccaact tcagcaacac tacatttcaa caacttcgag      5820
     tcgaagctgt gatcaatcaa gcagagcgta ttgtgatacc cggcaaaatc ttctttaaaa      5880
     gcgtgtcaaa cctttatctg ttgataacac catgtacgga attggctaat tggaccattt      5940
     gcaaaacatc tgaacttaaa gacgtgtcca ccgatagttg cattagcaac gtcataacag      6000
     gttctccaag caactgttca tacgaagtca tctacaatca tattccagtc atcgaaatgg      6060
     gaaccacaac agtacttcta aatgatgtac acgacactct acaaaatacc tgtggagcga      6120
     cgaacagaca gttacgaggc tcatatctca tcgtatacga aaactgttct atcacctttc      6180
     agaactttac atttacaaac gctgtaacca gaatcgtaga acaaccgttc tttgcaccat      6240
     caaccgacct aaacatatcc aggacccaaa cttatcaaac tgttggcatt aacagaatac      6300
     accaacttca tctgaaaaac atcaaaaaat tggaatatct gcacacaaag acagatgtaa      6360
     catcgtggtc attgtgggga ggattttcat tcaccacaac attgatcatt ctactaggat      6420
     tctacatctt cgttaaggca cgtcaacaaa cagcttcagt taacatcatc acacctcaag      6480
     aaaaaccaca agccactccg ctacattaca tttatcaacc accgacactt gctgacacat      6540
     acagttctac cagtcgttga tccaggaggc tcaacacttc aaagggggag t               6591
//
ID   Gypsy-407_AA-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-407_;
KW   Gypsy-407_AA-I; Gypsy-407_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-250
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-250
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2104-2104 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 250 BP; 63 A; 69 C; 45 G; 73 T; 0 other;
     agttaacacc cattcattcg aatcatcaaa ataacaccgg atacccatcg cctgcgatgc        60
     gctgacgctg caccacgcgc tgcaatcaac ccgtgtggaa tctaggccgt tgtcaacgcc       120
     gatctgctgc ttaggttgca ttttatgttt tcattttaat tgaaataaaa ttattgctca       180
     cttctgtttc gaccgtcaac gagtccgcgt tcttttttaa aaacccgaac aggcccctca       240
     ggtcttaact                                                              250
//
ID   Gypsy-408_AA-I repbase;    DNA;    INV; 7187 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-408_;
KW   Gypsy-408_AA-I; Gypsy-408_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7187
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7187
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2091-2091 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7187 BP; 2636 A; 1463 C; 1168 G; 1920 T; 0 other;
     ggcgcccgaa tagggaccag aagtgagtgc aattaacaag tagtgtgaag tgctagagac        60
     aacttagaag atctgcagcg taagagcttc gcaggcacta agcgacacca tccgcaccag       120
     gaaagctgat ctgatagagg atatcacctt cctgatacta cttggaaacc catccggatc       180
     gcacagcgca gccgcacgga acgcgccacc agtaagccag gatagctaat cactcaacct       240
     gggtgaaaag gatcccgcga tcgtgctgag aaggagggaa gacacctttc tggcccgacc       300
     caactagtct ctaccgaact cggcggagtt gggtatacca aaggaagtaa taggatttcg       360
     actaccagac acgcgttcca caattgcttg acgtccccca cgttagagtt acggggagca       420
     accaataaaa tcccgcaatc tcttggaatc cccagaagat gtttggaatt attatgtaag       480
     taaagttaat acgacaattt tatttcagat taagaaagaa aaaaagtgaa caacaaataa       540
     gtgaaaaaaa attttgtttt aaataagtgt ataaatcgac taactagaaa aaccactacg       600
     tacatcacgt ttaaattagt atcaatcgta atcttgagtg agtgaaatca agtgagtgat       660
     tcaagtgtaa gtgagaaata taagtgtgat taattgagtg ttttaatttt atcaatacta       720
     aatacaaaaa tggatcagtt gctcgatcag tgtgatcacg ttcggaccga aatcttttag       780
     gttttaactc gaagcccaat cctgaattaa tgtaactaac catttttttg atggctgtta       840
     tcacgattgt ggattttgtc attcctttaa aaaatcattc tattcgaaaa atattattcc       900
     gtgagacctt ctaagttcca gattttcgaa gagatgattt ttgtcggata aatattagct       960
     gaaagagaag ggtgcttttg atcatcaatt ttcctactaa aaggtcagtt taaaatgtca      1020
     aagtttgctt ggcctgtaat gcagacaaag tatgacctat accaaccgag atttttcgca      1080
     cacgagggtc gcggattaga gcattaaccg caagaattac aacattagag gcaacggcga      1140
     ttccgaatca agaagatttc tcggatccac cgttatatct tgtaagagcc gatgggtctc      1200
     cgataagccc agactctatt gaagatatac ctgacctcgt gaaaggtttg ccttctttca      1260
     atggtgaccc gaacgagctc agctttttta ttcaagacgc tgaaactctc gtcaatttgt      1320
     acactcccca ttcaaggagt tcaattgagg agaaaaacaa gttccatgta atttgtaaat      1380
     ctattagacg taagataaag ggagaggcaa atgacgccct cgttgcgtct aacgttaaca      1440
     ttaattggaa aatgattaaa aaaaaccctt accacctact acggtgagaa gagggatctc      1500
     gaaacattgg actaccaatt aatgtgtagt caacaaaggg gagacacttt cgataaatat      1560
     tacgataggg taaatagaat cctatcatta atagccaatt ctatatgtac cgattctaga      1620
     ttttcacacc cagaggcgaa gaaagctatg atcgatacct ataatcggaa agcaatcgat      1680
     gctttcatac gaggattgga tggagacata ggtcggtttt tgaaaaacta tgagcctgac      1740
     tcactggctc atgcctattc atactgtata tcgtttcaga atatcgaata tagaaaaaat      1800
     gttacaagtc ataaagtgcc tgagatgcac gcaaaaccaa ggaacttaat tcctgccctt      1860
     ccaccaagac tatctaatat acctagaatc ccgatgagac cagccgctca tccacacccg      1920
     aattattacc ccccaaggca agcacctttt attccaccac agatgccacc taaacattat      1980
     ccttcttttc ctccggcacc tcctagacaa tcttacaatc caccacctca agttcctcag      2040
     aggaatccct tcagaggcgc ggaccactta gatactgatg tatctatgcg aaccgctaat      2100
     ataaattatt ccaataggcc ccaaaattca aatcagcaaa gacccccatt gaaacgtcct      2160
     agactattcc atgccactac cgaaatgtac caaaacccca atgttgaaga cccagtcagc      2220
     gaacggtcag attttgtccc atctgacgat gaagaatact atcctgagcc aacacagacc      2280
     ttcgaacggt atatgcaaac tatggaagct caaggtagag accctgttcc tgaagaaatt      2340
     gaagaacagg cagaattaaa ttttttagaa taaattcggc tttaccatat tttctgtact      2400
     atggcaaggc caaacaacca ttaaaaatac tcatagatac agggtcgaat aaaaattata      2460
     ttcatcctaa atttgcaatc atttctcacg acgtaaaaac cccattttca gtttcttccg      2520
     ttggtggaga gataaaaata aataaatttt cgaaggctaa atttttcaag ccttattctg      2580
     atttggaagt taaatttttt cacatggata aattaaaatc tttcgacgct ataataggcc      2640
     atgacaccct taaagaactc aaagcagtca ttgacacttc caatgaaaaa ttaattttaa      2700
     ataatgaatt tatgattccc ttgcttcaat acaaattaca agaagttaac aaaattcaaa      2760
     tacgaaatga acatttagaa aagcatgaaa aaaccgaact tgataaactt ctgaaagaat      2820
     ttcaagattt atttcaaccc cctgacgaga aattaccatt cactaccaga gtaaaagctg      2880
     aaattaggac tacagatgaa tctgctatct acagcaaatc ctacccgtac ccacaagctt      2940
     tgaaaagtga agttaacaaa caagttcaaa agctattgaa tgatggaatc attagagcat      3000
     caagatctcc atataattca cccgtttgga tcgttcctaa aaaattggac gcttcaaatg      3060
     agaaaaagta tcgaatggtt attgattata ggaagttaaa tgcaaaaacc attagtgaca      3120
     ggtaccctat accagatact tctgcagttt tagccaattt gggcaacaat aaatatttta      3180
     cgactttgga tttggcttca ggatttcacc aaattccaat ggccgaaaat gatatagaaa      3240
     aaacagcttt ttctattaac aatggtaaat atgaatttgt acgtttacca tttggcttga      3300
     agaatgctcc agcaatcttt caaagagtaa tggatgatat cctaagagac catttaggga      3360
     aaatttgcca tgtctatatt gatgacatca ttattttcgg aaaaacttta gaagaacatt      3420
     tggaaaactt gagaattata cttgaaacac taaggaaagc gaattttaaa attcaaccgg      3480
     acaaatctga atttttacgc actgaagttg aatttcttgg cttcattgtg tctgaaaatg      3540
     gattaaaacc aaatatgaaa aaagttgaat gcattcgcaa ctatccagaa cctaagaact      3600
     taaaagactt acgagcattt ttaggtcttt caggttatta taggcgattt gtcaaggatt      3660
     atgcaaaaat tgcaaaaccc ttaacaaaac ttttaagagg ggaagatggc catcgccaga      3720
     ttcctaagaa ccaatccaaa aattttccca ttactttcga tgacgaagca aaacatgctt      3780
     tcaaaatcct gagagaaata ttatcttcaa acgatgttct tgcttatcca gattttaccc      3840
     tacccttcat actgaccacc gatgcttcag acaaagcact aggtgcagtt ctttcacaaa      3900
     aatttcacga tggtgaaaga cccatcactt ttatttccag gacactctct caaacagaag      3960
     agaattatgc gaccaatgag aaagaaatgc tcgcggtcgt atgggctctt catacgcttc      4020
     gaaactttat ttacggagca aaactaaaga tctttactga tcaccttccc ctaaccttta      4080
     ctttatcccc aaagaataac aatgcaaagt taaaacgttg gaaatcattt ttagaagagc      4140
     atgactacga aatgcagtac aaacctggaa aatccaacgt tgtagctgat gcactttccc      4200
     gcatccaaat taactcacta accccaacac aacactcagc aaacgatgat gacacatcct      4260
     ttataccttc tacagaagca ccaatcaatg tatttcgaaa tcaattaatt ttcaaaattg      4320
     atcaaatctc cagttatgag caaaatagac catttgagag atatcaaaga catatatttt      4380
     ccgaaccaga attcacgaat gactttttga aatccaaact aagagagtac ttaattcccg      4440
     gtatactaaa tggcataatg actgatgaac caacaatggg caaaattcag gagatctata      4500
     aggataattt caatcctaga atagttagag ctaggtactc gcagagaatt gttcatgata      4560
     tagaagaaga agaagatcaa ctagaagaaa ttaaaaatat tcataatttt gcgcatcgta      4620
     acgctagaga aaattctcta cagcttatta gaaagtttta cttccctggc atgaacaaaa      4680
     ttattcaaaa ttatgtaaac aaatgtgaaa tttgtaaaat ggagaaatat gaccgaaaac      4740
     ctcaaaaatt tattccagtt aaaactccca tacctaagta cccaggagaa ataatacata      4800
     ttgatatttt cctttacaat gcaaatttta tgttcataac atccctagac aagttctcca      4860
     aatttttgaa gatcaagcct atcaaatcca aatctatagc agatgtcaaa aatgtactta      4920
     ttgaacttct gtatgattgg gatcttccag cgcaaatagt aatcgacaat gagagttcat      4980
     ttgtatcaaa tgtcattgaa cagcaaatca aaaatctagg cattcaaata ttcaaaactc      5040
     ctgttcatag gtcagaaact aatggccaag tagaaagatg ccattcgacc attagagaaa      5100
     tagccagatg tactaaagct cttaaccctg atatgtcagt tcacgaatta atccaacagg      5160
     cagctcataa atacaataac acaattcatt cctttacgaa acaaacacca aaacaaattt      5220
     atactggaga taatcccgat aacttacctt ttaacgaatt cgccatccaa agagataaaa      5280
     ataatgaaaa aattacaaaa ttgtttaaag ccaaagaaga aaacattgta ccaaataaat      5340
     atgaaacata tacaccaaat acttatgctt acgaaaaaac atttacaaat aataaaagaa      5400
     aaaatagata taatatggtt gtaatcaaag aagatcatga tacttatgta attgattcaa      5460
     acaataggaa aattcacaaa acaaatctca gaaaatcaaa taagaaataa aatttaatat      5520
     gtatttttcc atttctttca gactcgccat ctgcgtgtcc ccaataatag ccagaattca      5580
     aatccacgac ctaacaaaca atcccttggc aatagtacca ctaggagaag ctaaagtaaa      5640
     gacgggctat atccgaatcg ttcacccaat agacctcatt caaataggca acaccatcaa      5700
     taatgtcaat aatgatatcc agaataatcc ttttactaac ccactttatg aactaatcca      5760
     aatcaaaaat tataaattgt acgaaacatt tctcaaaatc aaaccattca acaatagacc      5820
     gaaacgttgg gacacaatcg gaacagtatg gaaatggatc gcaggaagcc ccgacgccga      5880
     ggaccttcga ctcatcaact catcgatgaa ctcgctaata cttcaaaaca acaaacaaat      5940
     cttcatcaat caggcaatcg acaaacggat tcaagaaata acggacatca ccaaccaagt      6000
     tctaaaaatt gagaatgagc gcaccaaaaa tcattccatt gaaatcaacc aattaatagt      6060
     tctttctaat ctggattcct tacagaatca agtagagaca ctcgaggaag ctatactcat      6120
     ggctaaacat ggaataccca gcagcaaact cctatcaatg agagatttca acaaaattgc      6180
     tacatttcta caaactcatg atgtacaaat tacgtccttc gaagaattac tatcgcagtc      6240
     aaaagcacaa gtaattttga acaatactca tattgtctac atgctgaaag tcccacaggt      6300
     atcacttgta tcatatgaat acgattacat agactcaata atcaaatctg agaaacgtat      6360
     ttcactcaat aagaattaca ttcttagaaa cgctacacat gtctatgaaa ttgatcaacc      6420
     ttgcgaagaa cagaacaact acttcctatg tgaaaataca caaatcgaac atgctaatga      6480
     gtgtattcac aggttaacaa ctggacaaca ttctaactgt acatttgaga aggtatactc      6540
     taaaggactc gtaaagagga tcaacgacgg aaccatcctt attaatgacg cagtcgtaga      6600
     agttacatcg aattgcacta attccagcca accattaagc ggatcattcc tgatacaatt      6660
     tacccaatgt aaccttcata ttaacggaga actctactcc aactatgaaa tcaccatacc      6720
     tggtagacca tactatccaa caaccggact acgagtagac gaaattcata tcatcgatga      6780
     accacctatg gaatacttac aaaaacttac attggatcat cgagaagaat tggaaacctt      6840
     gaagctgcaa aatcattccc tttcatggaa actcaatgta tttggaagcg ttggactttc      6900
     gacggtaatt attgtctcga gttcaatagc agttttctgt tattttttca gaaggaaaca      6960
     gcaatcagac atcaaagtca cattcaacaa agatgctgag actatcataa ttcatgactt      7020
     ggagccatca ccatcttcaa cattatcaga aagcaaatct ctcacatcaa atccagagga      7080
     actatcagag gaaagaaaga aagaacttca aacatttttc gatactccaa cagcactccg      7140
     caccatccac atgtaacttt gaggacaaag tcacttaaga ggggagg                    7187
//
ID   Gypsy-408_AA-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-408_;
KW   Gypsy-408_AA-I; Gypsy-408_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-378
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-378
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2105-2105 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 378 BP; 126 A; 98 C; 65 G; 89 T; 0 other;
     agttagcaac agcgcggcct gcatcatcag tccatcgatc ccacgatttc atcagacgat        60
     ggatgacata tcccagacca ctttcttcga taatccaaac aatcgccgtt attgaaatca       120
     cgccgatcac cgatgtcgcc aatgccatga tgctacggac cacccgcacg cagagtcatc       180
     agaatccatt agcgaaaacc agaatggact gcaacataaa caatcccaaa ctgttcccac       240
     gttccaggac taacccagaa ctaacttcgt aggttaagaa caaaatgtaa atcagtcttt       300
     agtaaaccgt gaataaacga agagctaagg ctcaaaatat attttttttt caagtttcct       360
     gacttggaag aattaact                                                     378
//
ID   Gypsy-409_AA-I repbase;    DNA;    INV; 4108 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-409_;
KW   Gypsy-409_AA-I; Gypsy-409_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4108
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4108
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2092-2092 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4108 BP; 1516 A; 595 C; 742 G; 1255 T; 0 other;
     aatcagaagt gggatcaacc aacaaatatg cctcaaatca attcccgatc ggattcagaa        60
     caaccggaga atttcggaag cggtcttcct tctcaaggtg tcaacgagca gtccgtcggg       120
     tggaatgaga tgaccaagag agttgcctgt ggaacgtcaa gaagcgaaca ttgtggtgga       180
     ttcagaaacg ccgagaagtc atcagagatg gttagtggaa gacaaagcgc tacactggag       240
     ttgaaacaag caacaaatag ctgtatcgat cttcatgaac tcagttcgtt cctaccgttg       300
     tattcgggat cgtcgaatga aaacgtcaac tttttcctat ctatgattga acaaattaag       360
     caaacttttg gagtagagaa acaagtgatg aagctgatta tttttagaca attaagagga       420
     agagcacaaa tttggttgtc gtcacaacca gatttgttgt tagaagatta tgagaaaata       480
     agaagccagt tgaagtctac ttttggaatt gtagaaaaca cttttgaact acggagaaag       540
     cttgaagcaa gaaaatggga agtaaatgaa acctttttgg actattacct tgacaaaaga       600
     agattagctg tcccgttgaa attggatgaa tcagagctag ttgagtacgt tattgaaggg       660
     attccggata ttcgtctaag aaaccaagct aaaatgtgtg gaattacgtc tgttgaaaat       720
     ctgcttcaag cattcaaatc cattcaactt tacctgcgac gtccatcaaa tgttcctgtt       780
     tgctacaaat gtggtcaacc tggtcatata gctgtaaact tttcgaatga agctccccat       840
     cagaagcaac aaattaccag aaatacaact gccatgatca gacatgcgaa cgtaactgtg       900
     ccaaataata aggaagtttc ggtggacaga acaatgacta acaaagatgg actagtagat       960
     atctatttga ctgattttga ttttaattta aaagctttgt ttgacacagg cagcccagtt      1020
     tgtctgatac gccttggttt gatcgatcgc gaaaaaatgt gttcgtataa tgaaaataaa      1080
     tcttacaagg gtatcggagg aactaggtta aatattgtgg gcaggctagt tactaatgtt      1140
     tgtattcaaa atgtattttt cagcaatgaa tttctggtga ttcctgattc ggccatgatg      1200
     tcatatgatg ccataattgg tagaaacgtt attttgacgc ccggaatgaa aaccataatt      1260
     gaaaatcgca aaattcatat ctctcggact ccttttattg atggtcgaat ggacagtgct      1320
     gaacacaagg taacgaacat tgttaaatta attgatgaca agaaaatcat tgaacatact      1380
     agtgatattg atagcgatca tttggataat ttgcttcaga ttttcaaaaa atactacttt      1440
     tccttcaaac gacctcctta tccagaaaca aattatgaaa tgaaaattac tcttaaatcc      1500
     gctgcaccat ttcattttaa acctagaagg ctttctcaat ctgataaatt gaaagttgat      1560
     ggtaaaatta acgaattgct caaatcaggt atcattaaag aaagtgactc gtcttttgca      1620
     agtccaatag ttttaattcc gaaaaaggat ggcgatgttc gattgtgtat agattataga      1680
     aagttaaata aagacacata tcgcgataac tatcctttgc cactaataga agatatattc      1740
     gataaattaa aatataaatc aatattttct atactagatt tgaaatcagg attccaccaa      1800
     ataagaattg cacctgaatg caccaagtat acctcttttg taaccccttc tggtcaatat      1860
     gaatataaaa gagttccgtt tggtctctgc aatgcgccag cagtgttcca aagatttatt      1920
     aataaatttt ttaagaatct cattgttgaa ggtaaaattg tagtttttat tgatgatatt      1980
     ttaatagcat ccatgtcaat tgaagaacat ttcgaaattt tgaaagaagt tttgaaaatt      2040
     ttaagtaata atttgttgga gcttaatttt gataagtgta agttttgttt taatgaaata      2100
     gattatttag gttatacaat taatgagttt ggaagaaagc caagtaaaca tcatatagaa      2160
     tccgtgatga actttcccat acctaaaaat gctaaggatg tacaacgatt tttaggcttg      2220
     actagttatt ttagaaaatt tatttataat ttttcaacta ttgccaaacc tctatataat      2280
     ttattacgaa aaaatataga attcgttttc aatgaagttg aaattgaagc atttgagaaa      2340
     ttaaaaaaca tattagttaa agcaccagtt ttatccattt atgattcgaa tgctgaaact      2400
     caactacact gtgatgctag ctcatatgga tttggagcta tcttattaca aaaacagaaa      2460
     aatggtaaat ttcatcccgt gagtttctat agtaaacaaa ctgatgagta tgaaagtaaa      2520
     ttgcatagtt ttgagttaga aacgctagct gttgtaaacg ctgtgaaacg tttccatgta      2580
     tatttgtcag gaaaaaaatt taaaattttc acagattgta atgctttggc acaaacttta      2640
     gctaaaaaag aaatcaatca taaaattagt cgatgggcgt tatttttaga aaactatgac      2700
     tacagtttag aatataggga cggtgataaa atgaaacatg tagatgcatt aagtaggctc      2760
     tccatgagtc atttggaaaa tgatcgtact tctaacaaat ttgaaaataa tgataatata      2820
     tgcatattga cgactgacga aatagaaagg aatattattg tagcccaaga acaagatgag      2880
     aaactaaaaa acataaaatt gcatttagaa actggaactt ttcctaattt tgaactaaaa      2940
     aatggaattt tgtttagaaa tgatgataga aaatcattgt tagtagtacc aaagtgcatg      3000
     attgataata taataagaat atgtcatgat aaattaggtc atttaggaat agagaaaaca      3060
     atgatcgaaa taaagaaatg ctattggttt gcatgtatga gggaaattgt gaaaaaaata      3120
     tatcaataac tgtttgagct gcatatttta caatccagca gattcaaaga aggaaggatt      3180
     tttaaagaat atagaaaaag gtgatcagcc ttttaataca attcatattg atcactatgg      3240
     tccgattcaa caatcttctt caaaaaactt caaatatatt ttagttattg tagatggatt      3300
     cactaagttt accaaatttg atcctactaa aacaacaagt actgatgaag ttataaaaaa      3360
     tttgcaatta tatattaatc attacagcaa accgttaagg ataataactg atcgaggtag      3420
     ttgttttaca tcggataaat ttaaaacatt ttgcgttgaa cggtttgtcg aacatatcaa      3480
     aacagcaact cgtacaccag aagcgaatgg acaagttgag aggttaaaca gaactctgtc      3540
     tccaatgata gccaaattga tgaatgatac gggccttaaa tgggataaat tattggcaga      3600
     catagaatat gtctataata atactttcaa tagatctatt caaaatttcc caagtgtttt      3660
     actttttggt gtattgcaaa acaatttaaa atctgaaaat aataacattg aaacatttgt      3720
     aagaaacaat caacttccag ttcaaaatcc gggaatatta gaaattagac aaaaggcaaa      3780
     tgaaagcata aagaaacttc aggcatataa taaaaagatg gttgataaaa aacgaaaagg      3840
     tgtacaggat tacaaggaag gagattttgt ggttttaaaa acaaattttg aaaataaatt      3900
     gtccaaaaaa tttagaggac cttatgttat caagaaaaag ctaccaaatg atcgatacct      3960
     tattacagac atttatgatt ttcaagtcac acacttaccg ttcagctctg tatgttcacc      4020
     aaataatatg aggagatgga tatcaaattc tgattcatta gtcaattatg gtgtcaatga      4080
     ggacattgac ggatcaggat gaccgaaa                                         4108
//
ID   Gypsy-409_AA-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-409_;
KW   Gypsy-409_AA-I; Gypsy-409_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-133
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-133
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2106-2106 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 133 BP; 50 A; 19 C; 24 G; 40 T; 0 other;
     tgtagtagag ttatattata attagtacta agctgttcac aagtaggcca tgacatatga        60
     tgacagtgac tgactgtaca atgtaagaca ttctgaaata aacgttaaaa cgatcaagac       120
     gtcttttact aaa                                                          133
//
ID   Gypsy-40_AA-I repbase;    DNA;    INV; 5318 BP.
XX
AC   AAGE02031144;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_AA_;
KW   Gypsy-40_AA-LTR; Gypsy-40_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5318
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02031144; Positions   70680   65363.
XX
CC   Positions [3912-4379] - Integrase core
CC   'CGTAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2298..4898
FT                 /product="Gypsy-40_AA-I_2p"
FT                 /translation="MDTSFCSSMLVVPKGKNDIRLVIDLRGPNRYIFRTPF
FT                 SMPTLEQILAELDGATWFSTIDIANAFFHIELDEESRHLTNFFTEFGMFRC
FT                 VRLPFGLCNAPDLFQETLQRKILGGCKGCKNYQDDILVFGSSKEEHDQNLA
FT                 AVLACLANHNVKLNDSKCVFGSQIVGFLGFTLTPQGWMIEEEKLSAVKHFR
FT                 TPASCSEVKSFLGLVTFVDKFIIHRATKTEYLRALAVSERFYWTKNEEREF
FT                 CYLRDEALKTIRRLGYYNPSDRIELFVDASPTGLGAVLVQYNNADQPRIIA
FT                 CASKVLTPTEQRYPQTQKEALAVVWGVERFTYYLLTTSFVVRTDAEANQFI
FT                 YDANHRLGRRAVTRAEGWALRLQSYDFSVKRIPGNENVADALSRLIPATQQ
FT                 SESFDEDEEKHFLRALDSGCMELTWTEIEEASESDEELRLVRQALKVKKWP
FT                 SEIRPYEAQRKKLHFLGPLIFKDERMVLPRALRRRALDSAHGGHVGVMAMK
FT                 RVMRQFFWWPKMSAAVSRFVKNCETCALLSKRNPPVPLVSRELPDGPWEVL
FT                 QIDFLSVPNFGSGEFLIVIDTYSRYLHVVEMRSMDAESTNSALSKVFQTWG
FT                 LPIVIQSDNGPPFQSAVFIKFWKEKGIDIRKAIPLSPQSNGAVERQNQGII
FT                 KALSASRLDGRNWRDALQEYVHRHNTLVPHSRLAVTPFELMVGWKHRGTFP
FT                 SLWSGSSELDRSEIRDRDAEAKLASKVYADSVRGAKESDIKIGDVVLLAQQ
FT                 KRSKTDSTFSAERFRVVAREGAKVVVMSKTGVQYARNVQEIKKAPGFVVDP
FT                 ESSEEKQDIHIDNGSSSMLENFPNAADGISPSSVIPTNDSRLLRKRNLIKR
FT                 PSRLNDDFIYRVFH"
XX
SQ   Sequence 5318 BP; 1539 A; 1040 C; 1278 G; 1461 T; 0 other;
     tggcgtggtc atggtcgcca ggtgagtaaa gagaaaagat tgcatttcaa ctacaaatgg        60
     gtgaaagttg accggatttt tttttcccca agaacgaatg atgcaaaaaa aatgaggagc       120
     taagagcagg tcttaatgcg caggatgcgg gaagtaatcc agatcaccac aatcttgact       180
     tcgatgtgcc aaacaggttc agtagtactc gacacatggc attcgctccc ggtgcgttcc       240
     gaagtcttga agaatctcgt tttttatcat cgatgaacca actgtcggta gcgtcgatca       300
     atgtaccaga atgcaaggct gccgaaaacg accaaatcca tcgtcagacc ttcgaacagt       360
     ggaaagactt gctaatggat tctatgaatt tggctggtat tgaggaagag gcaacaatgt       420
     acacgatctt caaggtcaag gctggaacag gtttgcttga aatctacagg aataccaaat       480
     cgcaaggaga tgcgccagat gaaaaatcag ctccattttc gaacgccatg catcgtctga       540
     agacctattt tggctctggg tctgatgtca tgttgatgag acgtcggctg gcactaatgg       600
     ttcaaaaatg tgaggaatct gatctgaatt tcatcataag ggttggttca acagctcgcc       660
     tgtgtgaata tgatccagat aaagaattcg aggaagttgt ggctacagtc gccgaacacg       720
     ctaggaatcg agacgtacgg actactgctt tgaagatgct tagtcgcaag ggaaacttcg       780
     cagacttggt tgacaaagtt cgcgaactgg aagcaataag actcaatgaa gaatatgtta       840
     tgcagaaaca tgaaaagcag attgaaaatc caagtcacgc attgattgct ccggtaagat       900
     cgccgtacag ctgggtacca aatcgtccta ttcgtgggaa tgctattgct cgtgggtatc       960
     cgagtcgccg aggcacctgg cggggtctaa gaggcaggca atcaatccca aggaattagt      1020
     atcaaccaca aacattgtct gcaccaggag aaacgtgctg gcgttgcaac ggtttctatc      1080
     actcggtaaa tgtgtgtaat ggtcgagata aaatttgtta tagatgcggt gttgtgggta      1140
     cattgtaagg gcgtggaccg caagcgcata taagtgtatt gttcagatgg gaatggaagc      1200
     agctctggtt aaaattgccg ttgttgagaa gttcgaagaa gtttcagctg gcgaagactc      1260
     ggtaagtgtc gctacggaaa attaatcggg cattgaattt tgaaaggaag cattaaatta      1320
     ccttttgtta tatgattttc atgacttcaa taaatgaatt aatgtgaaac aatcattatt      1380
     ttgaaattta ctatgcagga atcgattccc aacaacagag tggtaattca cagtagtcct      1440
     tgtgatcccc ttgtaagcga tcttgagtta atgatgccgc ccaaacaaca accagattct      1500
     tcatctcttg tcgcaacact tcaggctgca cttccggaaa aggattcaaa acatgttgaa      1560
     atggacgcta taagtgtaaa tactgtaagt attgatatac tgttgatcaa tgtatggttc      1620
     taaacttatt aacctcatgt tacgctagct taatcgatca atgccaaaca aaccacctgg      1680
     cacgagctcc catgtgtata atgttacaac agatgatgga gttatagttg gagttgtggc      1740
     tggattgcgc tgttcattct tgatcgattc tggagcacag gtcaacacat ttactgaaga      1800
     tttgtttcaa gaactgattt ctaatcctaa gcatagagat gaagtgttcg aggtaaaata      1860
     tcagaccgac agaccactga aggcgtacgc aaccgtcggc gaaatcaagg tagttgctac      1920
     tttcctcgca taccttttta tttcggatga taggccactt ctgctggaga aattctatgt      1980
     ggtcagcgaa gtacgtgctc tgctaggtag atcaactgca tcacgataca gtattctaat      2040
     gcttggtcta aaggttcctg tacaatcaca gcgtctttgg atcgcatata tccttgattg      2100
     caggtgaaat tgcaacgata gtcacaaatg aaattttccc caaattcaat ttgccgccgg      2160
     ttaagatcca ttacgataga tctaagccgc cttgtcgaaa cattttcctc aatattccat      2220
     tggccgtgag accgttggtc gagaaaagaa tccaagagct gataaatgcg aatataattg      2280
     agccagtagt cgaggggatg gatacttcgt tttgttcctc catgttggtg gtacctaagg      2340
     ggaaaaatga cataaggctg gttattgatc tgagaggccc taaccgctac atattcagga      2400
     caccattttc aatgccaact ttggagcaga tcttggcaga actagacggc gccacctggt      2460
     tctcgactat tgacatagcc aacgcgtttt tccacatcga attggatgaa gaatccaggc      2520
     atttgaccaa cttctttacc gaattcggaa tgtttagatg tgttcgactt ccatttgggc      2580
     tctgcaatgc accggattta ttccaagaga ccctgcaaag gaagatattg ggaggatgta      2640
     aaggctgcaa aaattatcaa gatgatattc ttgtctttgg atcgagtaaa gaagagcatg      2700
     accaaaattt ggccgcagtc ttggcgtgcc tggccaatca caatgttaag cttaatgata      2760
     gcaaatgtgt ttttggcagc cagatcgttg gatttctggg tttcaccttg acgccacaag      2820
     gttggatgat agaggaagag aaactatcag cggtcaaaca tttccgaacc ccagccagct      2880
     gctccgaggt caaaagcttt ctcggattgg ttacgtttgt ggacaaattc attatacatc      2940
     gagcaaccaa aacggaatat ttgcgagcgc ttgcggtttc ggaaagattt tattggacca      3000
     aaaatgaaga aagagaattt tgttacctta gggatgaagc gttgaagacg atcaggcgtt      3060
     tggggtatta caatccgtcc gatcgaattg agttgtttgt cgatgcgtct ccaactggcc      3120
     ttggtgctgt gctagtgcaa tataacaatg ctgatcagcc tcgaatcatt gcttgcgcgt      3180
     caaaagtact gactcccact gagcaacgct atcctcaaac acaaaaagaa gctcttgctg      3240
     tggtttgggg agtggaacga ttcacttatt atctgttaac cacatcgttt gtcgttcgaa      3300
     cggatgcgga ggccaaccaa tttatttatg acgccaatca tcgattggga cgaagagcag      3360
     tgacgcgggc tgaaggatgg gccttaagat tgcagtccta tgatttttct gtaaagcgca      3420
     taccaggcaa cgagaatgta gcagatgcat tatcccgatt gatacccgca acgcagcagt      3480
     cagaatcgtt cgatgaagat gaggagaaac actttcttcg tgctctggac tctgggtgta      3540
     tggagcttac ttggactgaa attgaagagg catcagaaag tgacgaagaa ctaagattgg      3600
     taagacaggc gcttaaggtg aagaaatggc catccgaaat acgaccgtac gaagctcaga      3660
     gaaaaaaatt acattttctc ggaccattga ttttcaaaga tgagcgtatg gttctacccc      3720
     gggcgctccg tagaagggca cttgattctg ctcacggtgg acacgttggt gtaatggcca      3780
     tgaagcgtgt aatgcgtcaa tttttctggt ggccaaagat gtctgctgca gtttctcgat      3840
     ttgttaagaa ctgcgaaaca tgtgccctct tgtctaaacg caatcctccg gtaccacttg      3900
     tatccaggga acttccagat ggtccatggg aagttttaca gattgacttc ttgtccgttc      3960
     ccaactttgg ttcaggtgag tttttgattg tgatcgatac gtactccagg tatcttcatg      4020
     ttgtggagat gcgatctatg gatgcagaga gtacgaattc agccttaagt aaggtgtttc      4080
     agacctgggg actaccaatc gtgattcaga gcgacaacgg accgccgttc caaagcgccg      4140
     tttttatcaa gttctggaaa gaaaaaggga tcgatatacg caaagccata cctcttagtc      4200
     ctcagtctaa tggagctgtc gaaagacaaa accagggtat tataaaagcc ctatcagctt      4260
     ctagacttga tggtagaaat tggcgtgatg ctctccagga gtacgttcat cgtcacaata      4320
     cactggttcc ccattcgcga ctggcggtga cacctttcga actgatggtg ggctggaaac      4380
     atcgtggcac ttttcccagc ctgtggagcg gttcatctga gcttgatcgt tcagagattc      4440
     gtgatcgcga tgcagaagcg aagcttgcaa gtaaggtgta tgcggattca gtgcgtggtg      4500
     cgaaggagtc cgatatcaaa atcggcgacg tggttttgct tgcccaacaa aaacgatcaa      4560
     agacggattc aacattttca gcggagcgtt tcagagtagt ggctagagag ggagcaaaag      4620
     tggtagttat gagcaaaaca ggtgttcaat acgcgaggaa tgttcaagaa atcaagaaag      4680
     cgcctggctt tgttgtggat ccagagtcat ccgaagagaa gcaggatatc catatagata      4740
     acggcagttc ttcaatgctt gagaattttc cgaacgcagc agatggtatc agcccgtctt      4800
     ctgtcatccc gacaaacgat tcaagattac ttcgcaagcg aaatttgata aaacgtcctt      4860
     ccagattgaa cgacgacttc atataccgtg tgttccatta gctttcacgc tactgaatgg      4920
     tttttttttc ttgaagcaat ggaaataatt tgatgaaaat gtcatggcaa cctgacaaag      4980
     aaaaattgaa gtgttaagta ataaaagaga aaaaaatgtt acctactttg tttttttatt      5040
     tctcgtagcg aaaattttgt cgaatgtatt gggaactttg cactctaaca gaaaagtaat      5100
     cgcctatctt gatgcgtggg aaattgcttc cacagaaatt atcacttttc ttgagcggaa      5160
     cagcataatt agtttgatat ctgaatttag cttaagaata cgcatttagc gtatgcttgg      5220
     tgtgtgttcg atgtcgtttt aaaagttatt ttgtttagaa aaataatatc aactaacaag      5280
     atgttttttt ttttgaagag agtacagatg gggaaaga                              5318
//
ID   Gypsy-40_AA-LTR repbase;    DNA;    INV; 417 BP.
XX
AC   AAGE02031144;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_AA_;
KW   Gypsy-40_AA-I; Gypsy-40_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-417
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02031144; Positions   65362   64946.
XX
SQ   Sequence 417 BP; 156 A; 51 C; 83 G; 127 T; 0 other;
     tgtagtaatc taggcgataa ttaaaaataa taataataat aaatgtttat gctagacaaa        60
     agtttctttg tttaatattg caaatattgt tctgataaat ttcataaagt caaagtgtct       120
     tgacctagaa atataaataa tttattattg ttcatcttgc acattgaaca tttatttttt       180
     taaagtgtat tccacgagaa ctttctgaag gggaaaacag aaagagagaa aacgcaaaga       240
     tgaaacgcca agttcgaatc ggatgccggt tgggagaggt aaaaggagaa aggaatgaag       300
     cgcggcattc tgtgaacgat tttaaacgcg aaggttcggg tattttgcag ctccgaaaaa       360
     atattgaaaa atacataaat tcgtgtaatt ttctcgatta cggttgagaa tacgaca          417
//
ID   Gypsy-40_AnFu-I repbase;    DNA;    INV; 5510 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5510
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2924-2924 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1032..1991
FT                 /product="Gypsy-40_AnFu-I_1p"
FT                 /note="gag."
FT                 /translation="MRRTIRKPRLNDTAIGXKTTSPKMAPKLDIQLAIKLV
FT                 KPFDGTTTLLNAYIESVELLMDYAEGVEEKDILKFVKTTLXGIAHGVIDSA
FT                 GSINQAFDLLRSRFSVHLTPLAVEREILSLKQGSKTISEFGHELEKMAAKL
FT                 AAAHVSSGTFQTEYAAQNIVNPIAVRAFIQGLNKPNTKFFLQARNPSTLNR
FT                 AISDALECEPRTSVAEDREMTLWCSPPRYMHRYTRRPQNSYHPRSFYNQSY
FT                 RGSYSPHFGSENQIRYTSNSNRRPYRGRHYSHNHPQPNANIRNNATTRVHL
FT                 GNVNPLEPANDTIPESDIEQDEIINLFR"
FT   CDS           1978..5472
FT                 /product="Gypsy-40_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LIYFVKLHFNSSVKAKFFLFGKYHDLVIDTGATCCVL
FT                 NINYLPNNVSIDNTIVLNMHGINGPTKSLGFINTIISIDSYCFPTVFHIVD
FT                 TLPSHIVGLLGANFLKKHKAVLNFENMKLTCTPNHNAEKLIIPPRTEIVTY
FT                 FETTQTNTCVVLNDVLQPNVYIANTIAQPNNGKIPIRIANFQNKPVNISNL
FT                 NPTIKPASEYTILKIKTPHHDTEHANQLLKELNLSHLSEYDKSVIGKICLK
FT                 YNDVFCLKNDTLSTTSIYEASLKVKNNTMPLYTKPYRLPYSQKAEVDKQIN
FT                 EMLKNKIIEETKSEWNSPILLVPKKSANDNKKWRLVIDYRRVNTVLQDDKF
FT                 PLPNIDEVIDTLSGCKYFSHLDLSQGYYQCPLRKKDRPTTAFTTPTGQYQM
FT                 TKLPMGLKISPSTFSRMMTVAMSGLNTEHCLIYLDDIIVFGNTLEQHNQHL
FT                 IKVFERLRQVNLKLNPEKCHFLKEELIYLGHYISAEGIKPDPKKLECIKNW
FT                 KPPKSSDETKRLVAFANYYRKHIKNFAEICMPLNRLTRKGVPFEWTLDCET
FT                 AFQKLKETFVNPPILDFPDFGTNNTFNLHTDASNTALGAVLSNQNGKPISY
FT                 ASRALNKAELNYATIEKELLAIVWSIKHYRPYLYGRHFNIFTDHRPLVYLF
FT                 TMNNPSSRLTKFRLLLEEYNFTINYKKGAENVIADALSRLPISELKAMDTH
FT                 KEVLITTRAKTVSNDTCQDTNESAVSKVTHIELQLCPNAKDLVISEHKIIL
FT                 PQSTTIVHLRGMIVRIKSYIKSLKNKTYLVIKKRDSYTTQLMENLKTLNEK
FT                 GMPKIIILNEDVKVIGEHEKTKKLLIMNDYHTLPTAGHAGIRRTLNTIKQR
FT                 YTWPGIDKDVKDMIARCKQCQLNKSRKPFKIPLKITDTASRAMEKLFIDLV
FT                 GPLVNAQGFEYILTTQCDLTKFITATPIANKTTDVVAKAFVENVILKYGVP
FT                 ETICTDRGTEFLSELFNEICKTLQIQKLQSTAYHHETVGALENSHKQLGNF
FT                 LRIYSEEKALDWNEWVSFYEFAYNNTVHTATGYTPFFLMYGRQANLPSNIT
FT                 TDKVQRVYYNLDDYSKVLPIKLKIAHEEVRNRLLKNKEKCKRYYDTTTKPR
FT                 SFQPGNQILVRKENSKKLETPYNGPYTVSKDEGENVRIEYQGKNETIHKNR
FT                 VKRWHE"
XX
SQ   Sequence 5510 BP; 2074 A; 1076 C; 925 G; 1431 T; 4 other;
     tggcgatcct gccaggagct gttgcccatt aacgtagtgt acatacgcat gtgaaaaaaa        60
     aacggaaaaa gttccgtctc ggtagtgaag tgatgaaacg tccactcgta ccaatcgtcg       120
     taccaatcgt cgcaatcgct gaaacaacac cgtaacccgt acacgaagtg tatcccgaca       180
     cggaaaccac acactaagag agacagaagc gcaccacccg tacgcgcata caccagtaat       240
     cgagaggaca acggacgctg ccgcatcgct gtaaaaacgc ggccagaaga catcccatgc       300
     taccgctgta aaaacgcagc cagaagacat cccatgccgc accgctgtaa aaacgcggcc       360
     agaagacacc ccatgccgca tcgctgtaaa aacgccgtca gaagacatca tacgctgata       420
     ccgatgtgca aacgccgcca gaatcctatg gcccatcgct gctaaaaggt acgccgtcag       480
     aagacatccc atgccgcatc gctgaaaaaa ggcacgccgc cgtagccgcc atcgctgaaa       540
     ccaagaacgc tgccagcaga cgccgtatgc cgccatcgcg ctgtcctgaa ccacgatgct       600
     gctaacgctc gattaagcgc aaggtacgtg aaccctttat ttgccactat attttttttt       660
     taaaaagaaa gctagctaga aatctaattg tcgataaatg tgattatctg aatgaaactc       720
     agttttacta atagtgttca agtgtgcgat caccaaagtg aaccatttaa gatagtgttt       780
     tatacggctc aaaatttaat tcagtgttag tgtgatcaat tccgaaattt tggttgtgtt       840
     tagagaaaat cgaattacac gtgtccctgc agttgtggta taatcgttca atcgttawta       900
     gacstgctat ttatttcttt atttttttac ttctcctata caattattaa tacatattcg       960
     aatcgtaaaa aaaaaaaaaa aaaaaaaaaa ttcaatcttt gctttacctg cactcacatt      1020
     ctttaatctg aatgaggaga actattcgta agcctcggct caacgataca gcaattggta      1080
     akaagacaac aagtcccaaa atggctccca agttagacat acaactggcg ataaaattag      1140
     ttaaaccttt cgatggaacc accacattgc taaacgcata tatagaaagc gtagaattat      1200
     tgatggatta tgctgaagga gtagaagaaa aggatattct taaatttgtg aaaaccacct      1260
     tamtcggtat tgctcatgga gtaatcgact cagcaggctc aattaaccaa gcttttgatc      1320
     ttctaaggtc acgttttagt gtgcatttaa cgccactagc cgtggaaaga gaaattttat      1380
     cgttgaagca aggttcaaaa acgatatccg aatttggcca cgagttggaa aaaatggccg      1440
     ctaaacttgc tgctgcacat gtgtccagtg gaactttcca gacggaatat gctgcacaaa      1500
     atatagtgaa tcctatagca gttcgcgcat tcatacaagg tttaaataaa cctaatacta      1560
     aatttttctt gcaagcacga aacccttcca ctcttaatag agccatatcc gacgcattag      1620
     agtgtgaacc tagaacaagt gttgcagagg atagagaaat gacgttatgg tgttcacccc      1680
     cccgctacat gcatcgttat accagacgtc cacaaaactc atatcaccct agatcgtttt      1740
     acaaccagtc ctatagaggc tcatactcac cacattttgg aagtgaaaat caaatccgat      1800
     ataccagcaa tagtaatcga cgaccatata gaggaagaca ctattcccat aatcatcccc      1860
     aacctaacgc aaacattcga aacaatgcta ccactagagt gcatttagga aacgttaacc      1920
     cgttagaacc agccaatgat accattccag aatccgatat cgaacaagac gaaataatta      1980
     atttatttcg ttaagttaca tttcaatagc agtgttaaag ctaaattctt tttgtttgga      2040
     aaataccatg atcttgtgat tgacacagga gcaacttgtt gtgtattgaa tattaattat      2100
     ctacccaaca atgtaagcat tgataataca atcgtgctaa acatgcatgg cataaatggt      2160
     ccaaccaaat ctttaggttt tattaacacc attatttcta tcgattcata ttgctttcca      2220
     acagtatttc atattgtgga tacattaccc tctcatattg taggattgtt aggagctaac      2280
     tttctgaaaa aacataaagc tgttctcaat ttcgaaaaca tgaaattaac ttgcacccca      2340
     aatcataatg cagaaaaatt aataattccc ccaagaactg agatagtcac ttattttgaa      2400
     acaactcaaa caaatacttg tgttgtatta aatgatgtac ttcaaccaaa tgtgtatatt      2460
     gctaacacta ttgctcaacc taataatggt aaaattccaa taagaatagc taattttcaa      2520
     aataaaccag taaacatatc aaatttaaac cctactataa aacctgcctc agaatatacc      2580
     atattgaaaa ttaaaacccc ccatcatgat actgaacatg ctaatcaact gttaaaggag      2640
     ttaaatttat ctcatttatc tgaatatgac aaatcagtca ttggaaaaat ttgcctcaaa      2700
     tataatgatg tattttgttt gaaaaatgat acattgagta caacttcaat ttatgaagca      2760
     tccttgaaag taaagaataa tactatgcca ttatatacta aaccttacag actaccatac      2820
     tcccaaaaag cagaagtaga taaacaaatt aatgaaatgt tgaaaaataa aataatagaa      2880
     gaaacaaaat cagaatggaa tagtccaata ttattggtcc ctaaaaagag tgctaatgac      2940
     aataaaaaat ggagactcgt aatagactat cggagagtta atacggtatt gcaggacgat      3000
     aaattccctt tacctaacat cgacgaagtc attgatacct tatctggatg taaatacttt      3060
     tcacatctgg atttatcaca gggatattac caatgtccat taaggaaaaa ggatagacct      3120
     actacagctt ttacaacccc cactggtcaa tatcagatga ctaagctacc gatgggattg      3180
     aaaataagtc catcaacgtt ttcacgaatg atgacagtag ccatgtcagg gttaaatacg      3240
     gaacattgtc taatatattt agatgatatt atcgtatttg ggaacacatt ggaacaacat      3300
     aatcaacatt tgataaaagt gtttgaaagg ttaagacaag taaacctgaa attgaatccg      3360
     gagaagtgtc attttctaaa agaagaacta atctatttag gacactatat ttctgcggaa      3420
     ggaattaagc ctgatccgaa aaaactggag tgtattaaaa actggaaacc tccaaaatct      3480
     tcagatgaaa cgaaaagatt agtagcattt gctaattact ataggaagca tattaaaaac      3540
     tttgcagaaa tatgcatgcc actaaatcga ttaacaagaa aaggagtacc atttgaatgg      3600
     actcttgatt gcgaaaccgc atttcaaaag ttaaaggaaa catttgtaaa tcctcccatc      3660
     ttagacttcc cagattttgg tacaaacaat acttttaatt tgcacaccga tgcatctaac      3720
     accgctttag gagcagttct tagcaatcag aacggaaaac caatatcata cgctagtaga      3780
     gcactaaaca aagcagaact caattacgca actattgaaa aagagctatt agcaattgta      3840
     tggtcaatta aacactatcg tccctattta tatggaagac actttaatat atttactgat      3900
     catagaccat tagtatattt attcactatg aacaacccat caagtcggtt aactaaattt      3960
     cgcctcttgt tagaagaata taatttcacc attaactaca aaaaaggagc agaaaacgta      4020
     atagcggatg ccttgtctag gttaccaatt tctgaattga aagccatgga tacacacaaa      4080
     gaagtgttaa taaccactag agctaaaact gttagcaacg atacttgcca agacactaat      4140
     gagtcagcag tatctaaagt aacccatatt gagctacagt tatgtccaaa tgcaaaagat      4200
     cttgttatct cagagcacaa aatcatatta cctcaatcca ccactatcgt tcacttacga      4260
     ggaatgatag taaggataaa gtcttacatt aaatcattga aaaacaaaac atacttggtc      4320
     attaaaaaac gtgatagtta tactacacaa ttaatggaaa atttaaaaac cctaaatgag      4380
     aagggaatgc ctaaaatcat tatattgaac gaagatgtca aagtaatagg agagcacgaa      4440
     aaaacaaaga aattactcat tatgaatgat taccatactc tacctactgc cggacacgcc      4500
     ggaattcgca ggactcttaa cacaattaaa caacgatata cttggccagg aatagataaa      4560
     gatgtgaaag atatgatcgc aagatgcaaa caatgccaac ttaataaatc gagaaaaccg      4620
     tttaaaatac ctcttaaaat aacagatact gcgagtagag caatggaaaa gttgtttata      4680
     gacctcgttg gtccgttagt taatgcacaa ggatttgaat acatcttaac tacacaatgc      4740
     gatctaacaa aatttataac agccacacca atagcgaata agacaaccga tgtagtcgca      4800
     aaagcttttg ttgaaaacgt catcttaaaa tatggagtgc cagaaaccat ttgcactgac      4860
     agaggcacgg aatttctatc cgaattattt aatgagatat gtaaaacgct acaaatacaa      4920
     aaattacaat cgacagctta tcaccacgaa accgtaggag ctttggaaaa ttcacataaa      4980
     caactaggaa atttcttaag aatatatagc gaagaaaaag cattagattg gaatgaatgg      5040
     gtaagctttt atgagtttgc ttataataac acagtacata ccgctacagg atacacaccg      5100
     tttttcctaa tgtacggaag acaagctaat ctaccatcta acataacaac tgataaagta      5160
     caaagagtat actacaactt agatgattat tcaaaagtgt taccaatcaa attaaagata      5220
     gcccatgagg aggtgaggaa tcgattattg aaaaataagg aaaaatgtaa aagatactat      5280
     gatacaacaa caaaacccag atcatttcaa ccaggaaacc aaatactagt ccgaaaagaa      5340
     aatagcaaaa aactagaaac gccatacaac ggtccctaca ccgtaagcaa agacgaagga      5400
     gaaaatgtaa gaattgagta tcagggaaag aacgaaacaa tacacaaaaa tagagttaag      5460
     agatggcacg agtaaaaata ttaaaaaaaa aaaaaaaaaa aaattaggcg                 5510
//
ID   Gypsy-40_AnFu-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-225
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2852-2852 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 225 BP; 69 A; 46 C; 49 G; 60 T; 1 other;
     tgtcatggag tcagcttaac acataagtaa atcgtgtaac gcacccttta ttatagtaag        60
     ttaccgaagt agtgagtgcc tgcgcgaggc actcagttag gatatataat tagtggcaaa       120
     tagtgggcac gctctctctc tgttcgtacg tcgtgggtaa cgcacgttac cagtataata       180
     aaacgcgctc agaacaaaca aaatcgggtt kataccttta taaca                       225
//
ID   Gypsy-40_CQ-I repbase;    DNA;    INV; 4487 BP.
XX
AC   AAWU01014791;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_CQ_;
KW   Gypsy-40_CQ-LTR; Gypsy-40_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4487
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 459-459 (2011).
XX
DR   GenBank; AAWU01014791; Positions    8716   13202.
XX
CC   Positions [3346-3813] - Integrase core
CC   'AGCAT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..1165
FT                 /product="Gypsy-40_CQ-I_2p"
FT                 /translation="MPPKEENQAEGSPVQVIRSGMFGQIEQYVLGEDWDEY
FT                 MNRLEMFFQVNDTPDEMKVPVMFTVAGPSLYTLANRLCAPVSPRIKTYTEL
FT                 TALFKDHFGPTTNVVSERYQLRFCEQTPSQRIADFIVTLKAKAQTCDYGNF
FT                 LQDALRDQFVAGIHDQSLRKKLLTESTLTFEKACTIAKAYEAALSQNKDMS
FT                 APSTSKMAALHNGGPSRQSKGKQPNRNQSSKSSRPPPKPKKPCFRCGRDHD
FT                 PDKCPALDWTCYACGKKGHVSSVCQSKSRQSQPKGSSKRVGEMSEAVEVLR
FT                 LNVLAGVGETAVRAARQPSSAAQSAAGSGSVSVLEPSSSKTPSSSNGGSPD
FT                 R"
FT   CDS           1438..4347
FT                 /product="Gypsy-40_CQ-I_1p"
FT                 /translation="MYPLLGRDGLDLMYPEWRKVFSVKSVSSAQTSFESEL
FT                 LKRFPKVVSETAKDVITGFSAEIVLKPDATPVFHKAYSVPYALREKVDQAL
FT                 DKMVEEAILVPVRTSPWASPIVVVPKKDSSVRLCLDGKATLNRFITTEHYP
FT                 LPRIDDILAKMANWKVFCKIDLSGAYLQVSLSESSQSICTINTHKGLFQYT
FT                 RMPFGISPAPAIFQSIIEQILFQSPGIAYLDDIIVGGSTMEECRENLFQVL
FT                 QRLNDHNVKINLSKSSFFQSKIEYLGYSITSEGIRPSESKVKAIIDAPAPK
FT                 NVQQLQVYLGLLNYYHRFLPNLSIELRPLYDLLRKNCRFVWTESCQSAFDR
FT                 TKSLLLENDLLEPFDPSKPIILAVDASPYGVGAVLSHLVDNVEKPVCFASS
FT                 TLTPAQVNYAQVHKEALAVVFGVKKFHKYLYGSRFILITDNSGVKEIFNPT
FT                 KGTSAIAAARLQRWALIVAGYNYVIEHRPGKLMNHADALSRLPLPEEPDVE
FT                 HVSLGINSLAAGSQVVNLDLIRSKQKSDPILSKIFDFVKSGWPTNLNSSFK
FT                 PYLSLNSHLGIDENVLYFDDRVVVPDALKANVMNQLHSNHDGIVRMKMLGR
FT                 LYVWWKNFDKDLNDFVKKCEVCQQRQPVPRESLQSAWPRCDRPFQRIHMDL
FT                 FYLEGHTMLIIVDAFSKFIDIRLLKSGNSIHLIEQVESFFATFGIVEEVVS
FT                 DNGPPFNSELFVAFLSANEVKVSKSPPYHPQSNGLAERGVRSAKDVLKKYL
FT                 LDEKCKPLSMARKLNRFLINYRNTPSTVTNRTPSSMIFSYTPRTLTNVVNP
FT                 QKVQVESTNAKPMIVRKKPIIQVSHESAKMKSFNAGDKVLYRNHFKDIIRW
FT                 IPAIVLQKLSPLTYLISLEGNVRMVHSNQIRYSDLSDKFHPSVPVHPVKAN
FT                 NDDESSGYEDTSSEDGNPVQVPATIRVTPPSKNKKKTSKRRRSETKSPKVR
FT                 RSNRLRGQPKLKYPK"
XX
SQ   Sequence 4487 BP; 1150 A; 1074 C; 1129 G; 1134 T; 0 other;
     cttggcgacg agggtaaaac ggaacggtaa actgaacagt acaatcagtg atcgcgagtg        60
     agtcgtagtt cgcgaaaaag tgtaagtaaa cggtcgaaag tgcagtacac gtggtgtgga       120
     cataacctca accatgccac cgaaggaaga gaaccaggct gaaggcagcc cagtgcaagt       180
     gattcgtagt ggaatgttcg gtcaaatcga gcagtatgta ctcggtgagg actgggacga       240
     gtacatgaac cggctggaaa tgtttttcca agtgaacgac acgccggacg agatgaaggt       300
     tccggttatg ttcaccgtgg ccgggccgag cttgtatacg ctagcaaaca ggctctgcgc       360
     cccagtctcc ccgcgtatca agacgtacac cgagctaacc gccctgttca aggatcactt       420
     cggtcccacg accaacgtgg tgtcagagcg ctaccagttg cggttctgtg agcagacgcc       480
     ttcccagagg attgcggact tcatcgtcac cctgaaggcc aaggcacaaa cctgcgatta       540
     cggtaatttc ctgcaggatg ccctgcgcga tcagttcgtc gccgggatcc acgaccaaag       600
     tctgcgcaag aagttgttaa cggagtccac gttaacgttc gagaaggcct gcacgatcgc       660
     caaggcctac gaagctgcgc tgagccagaa taaggacatg tcggccccgt cgacgtccaa       720
     aatggcggcc ctgcacaatg gcggaccgag tcgccagtcg aagggtaagc aaccgaaccg       780
     gaaccagtca agtaagtcaa gccgtccccc gccgaagcca aagaagccat gcttccggtg       840
     cggccgtgat cacgatccag ataagtgccc cgccctggat tggacgtgct acgcgtgtgg       900
     gaagaagggc cacgtgtcgt cagtgtgcca gagcaaaagt cgccagtcgc agcccaaggg       960
     aagcagcaaa cgtgtaggtg agatgtcgga agctgtggaa gttctccgat tgaacgttct      1020
     tgccggagtc ggcgagaccg cagtgcgagc agcccgtcag ccgtcgtctg cagcccaaag      1080
     cgcagcagga agcggtagtg tgtccgtcct ggagccgagc agcagcaaaa cgccgtcgtc      1140
     aagcaacggt ggatccccgg atcgctgaat cgtgtcgatt cgcccgaact cgtgtcgctg      1200
     gactgcgaag gtcgccgtct ggagttcgaa gctgactgcg gagcctgcaa aagcgtgatc      1260
     tctgcaacta cgtaccagaa atacttctcg cattgccctt tagtgcccac tgctcaagaa      1320
     ttcatctctg ttcccggtca acgcatccaa ccgcagggtc tggtttcgct tcgcgtttcc      1380
     gcaccttcgg ggatccaagg taagttggac ttgatagtga ttaccactgc taagaagatg      1440
     tatcctctgc tcggtcgcga tggtcttgat ttgatgtatc cggagtggag aaaagtcttt      1500
     tcggtcaagt ctgtgagtag tgcgcaaacg tccttcgaat ctgagctctt gaaacgattt      1560
     ccaaaagtag tttccgaaac cgcgaaagac gtaattactg gtttttcagc agaaattgtg      1620
     ttaaaacctg acgctacgcc agtttttcat aaggcgtact cagttccgta cgcgcttcgt      1680
     gagaaagtcg atcaagcgtt ggacaaaatg gtggaagaag ccattttggt acccgtgcgt      1740
     acatcgcctt gggcgagccc tattgtggtc gttccaaaga aagattcgtc agtaaggctt      1800
     tgtttggatg gaaaagcaac cttgaaccgt tttattacca ccgaacacta ccctttgccc      1860
     agaattgacg atattttggc aaagatggcg aattggaaag ttttttgtaa aattgatttg      1920
     tctggagctt atttgcaagt ctccttgtct gagtcgtcac agtccatctg tacgatcaat      1980
     acgcataaag gtctctttca gtacaccagg atgcctttcg ggatatctcc cgcccccgca      2040
     atttttcagt cgatcatcga acagattctg ttccagtcac cgggcattgc gtacctggat      2100
     gacatcattg tgggtggatc tacgatggaa gagtgtcgtg aaaatctttt ccaggtcttg      2160
     caacgcttaa acgatcataa tgtcaagatc aatctgtcga agtcaagctt ttttcagtcg      2220
     aaaatagagt atttaggtta cagcataacg tccgaaggta ttcggccaag tgagtcgaaa      2280
     gttaaggcga ttattgacgc ccccgcaccg aaaaacgtac aacagttgca agtttatctg      2340
     ggattgctta attattatca tcgttttctg ccgaatttgt cgatcgaatt gcgtcccttg      2400
     tacgatttgc ttcgcaaaaa ttgtcgtttc gtgtggaccg agagctgtca gtcggctttc      2460
     gataggacga agtcgctttt gctcgaaaat gatctactcg aaccgtttga cccttcgaaa      2520
     ccgatcattc tcgccgtcga tgctagtccg tacggcgtcg gcgcggtgtt atcgcacctg      2580
     gtcgataatg tcgaaaagcc cgtctgtttc gcgtcgtcca ctctcacccc cgctcaggtc      2640
     aactatgctc aagtgcataa agaggcatta gcagtagttt ttggagtcaa aaagttccac      2700
     aaatacttgt atggctcgag attcattctt atcacggaca acagtggagt gaaagaaatt      2760
     ttcaatccga ctaagggcac ttccgcgatc gccgccgcca ggctgcaacg gtgggctctg      2820
     attgtcgctg gttacaacta cgtaatcgag caccgtcctg gtaaactcat gaatcacgct      2880
     gatgcactct cccgtctccc tctgcccgag gaacccgatg tcgaacatgt cagtctcgga      2940
     ataaacagtc ttgccgccgg atcgcaagtc gtaaatcttg atcttattcg tagtaagcag      3000
     aaatctgatc caattttgtc gaaaattttt gattttgtga agtccggatg gccaacgaat      3060
     ctcaattcaa gctttaagcc ctatctgagt ttgaactctc acttgggtat cgacgaaaat      3120
     gtgttgtatt tcgacgatag agttgttgtt ccagatgctc ttaaagcgaa tgtaatgaat      3180
     cagctgcatt cgaatcacga tggaatcgtt cgaatgaaaa tgctaggtcg tttgtacgtg      3240
     tggtggaaga attttgataa agatttaaat gattttgtca agaagtgtga agtttgccaa      3300
     caacgacagc cagtgccacg cgagtcgctg cagtcggcat ggccacgttg tgatcgtccc      3360
     ttccagagga ttcacatgga tttgttttac cttgagggcc acacgatgct tatcattgtt      3420
     gacgcgtttt ctaaattcat tgatattcga ttgctaaagt ctggtaacag tattcacttg      3480
     attgagcaag ttgagtcctt ttttgctaca ttcggcatag ttgaagaagt tgtttcagat      3540
     aacgggcctc cctttaattc tgaattgttc gttgcatttt tgagtgccaa cgaagtcaaa      3600
     gtgtcgaagt ctccgcctta ccacccccaa tctaacgggt tggccgagag aggcgtgagg      3660
     agcgcaaagg atgttctcaa gaagtatctc ttggacgaaa aatgcaaacc gctgtccatg      3720
     gcgcgaaagc tcaatcggtt tttgattaat tatcgtaaca cgccgtcgac agtaaccaac      3780
     cgcacacctt cttcaatgat cttctcgtac acgccgcgta cgctgaccaa tgtggtaaat      3840
     ccgcagaagg ttcaggtcga aagcaccaac gccaagccca tgatcgtcag aaagaaaccg      3900
     ataattcagg tctcccacga atccgcgaaa atgaagtcgt tcaacgcagg tgataaagtc      3960
     ttgtaccgta accatttcaa agacatcatc cgttggattc ccgcgatcgt gcttcagaag      4020
     cttagtccgt tgacttattt gattagtctt gaaggtaatg ttaggatggt tcattctaac      4080
     cagattcgct actcagactt gtccgacaag tttcatccct ctgtccctgt tcaccccgta      4140
     aaagcgaata atgatgatga aagtagtgga tatgaggaca cgtcttctga agatggtaat      4200
     cccgttcagg tgccagccac cattcgcgtc actccaccgt ctaaaaacaa gaaaaagact      4260
     tctaagcgta gacggagtga aacgaaatcc ccaaaagtgc gtcgttccaa tagacttcga      4320
     ggtcagccga aactgaagta cccaaaataa tggttgatct tgcgttgtac ctggacccgg      4380
     gaaaagttct ttaatgaaga agcagtttag atttagtttg agttgtattt ggcagcgatt      4440
     agtcttctag tgcgtagatg tggaggatcg tttgaagcgg gagaaac                    4487
//
ID   Gypsy-40_CQ-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   AAWU01014791;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_CQ_;
KW   Gypsy-40_CQ-I; Gypsy-40_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-248
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 460-460 (2011).
XX
DR   GenBank; AAWU01014791; Positions    8468    8715.
XX
SQ   Sequence 248 BP; 68 A; 52 C; 54 G; 74 T; 0 other;
     tgtagtgttc ctcgatcagc agctataaca gtgctaccaa cgtgcctact agtgttgcca        60
     gatggtacga agtattgtaa agagaattat agcactaagg ttacttgctg gacatcgcag       120
     ttggatcggc ctcttctcct gccgaccgtc ggccagtcag gtcgtcttac ggataataaa       180
     ttacatatgt aatatatgta tgttagtctt agtattagac aacgcgtgtt tcaattaccc       240
     aagtaaca                                                                248
//
ID   Gypsy-40_DAn-I repbase;    DNA;    INV; 5587 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_DAn_;
KW   Gypsy-40_DAn-LTR; Gypsy-40_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5587
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 313-313 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4366-4845] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           551..2005
FT                 /product="Gypsy-40_DAn-I_2p"
FT                 /translation="MSDSEIILDDLLLNLNKWSVHQSRRLESSKENNSSEN
FT                 NWWSKKNIDSEMELREAQLKTIVESAVGGALAVQKQSFEKKLQELSEQIQK
FT                 LTVETPEVETYTDAVIIEGVVCKEPLDIIKSLPDFEGKCETYVSWRKAAHV
FT                 ALKVFEKYEGSSTYYQALGIMRNKIKGSANTVLASFNTPLNFKAMISRLDF
FT                 TYADKKPAYLIEQELSTLRQGDMTLTEFYDEVEKKLTLLTNKTLMTSDNAL
FT                 AMSLNEKYRVDALRVFITGVKKTLSDILFAKGPKDLPTALALAQEVESNNE
FT                 RYKFALNYSRKLGDRGQRTDHRHNDSDRNSFMPIQNKNPYFTYDSQERQGR
FT                 SQSINQDVSMRTIRTGQDKFRQTHFPTQENVWPPLQENVWASEQNNEWPTH
FT                 NQNAWQPKQNARQSQAHTGYAQASKRPNSGTARFTGPKQQRINHLAHGEGQ
FT                 GRKNADDYHQEAEAAVEDFDDELTCYDNVHFLATGPCYRT"
FT   CDS           3025..5082
FT                 /product="Gypsy-40_DAn-I_1p"
FT                 /translation="MEDHVNDIAWVLEKLFKANMRVSKDKSFFFKESVEYL
FT                 GFTVTSGGITTSPSKVDAIKNYKQPTNLFSVRSFLGLASYYRCFIKDFASV
FT                 AKPLTDILKGENGKISASQSKKVPISFDEKQCFAFEKLKNILFSENVMLLY
FT                 PDYKKPFDLTTDASALGLGAVLSQDGKPITMISRTLRDRELNFATNERELL
FT                 AIVWALKSLRNYLYGVKNLNIYTDHQPLTFAVSDRNPNAKIKRWKAFIDEH
FT                 NAQIFYKPGKENFVADALSRQAIHVLENDPQSDNATIHSEISLTYTIETID
FT                 KPVNCFRNQIVIEEGTADLTRSFIIFGRKSRHIIQFLNKETLLGRIRDVVK
FT                 QDVVNALHCELPVLALIQNSLVDEFPATTFRHTKKMVIDIYNNAEQKEIVA
FT                 TEHNRAHRAAQENVKQILQSYFFPKMSQLAASFVANCLVCQKAKYDRHPQK
FT                 QILGTTPIPSHVGETLHIDIFSTDRKYFLTCIDKFSKFAIVQPIVSRTITD
FT                 IEPAIMQLMNFYPHSKTIFCDNEPSINSESIRSLVSNRFNVEIANAPPLHS
FT                 TSNGQVERFHSTLLEIARCLKLERGMSDTVNLILQATIEYNKTIHSVTDKR
FT                 PIDIIHSISPEFADEIKGKVKEAQEIQLKRINETRRDRTFEVGETVLVKLN
FT                 KRLGNKLTPRYRTETIEADLGTTVLIKGRVVHKDNLR"
XX
SQ   Sequence 5587 BP; 1972 A; 1104 C; 1036 G; 1459 T; 16 other;
     aagacttctt aattggcgcc caaacggatt ttcgagccta cgacaaataa cttattttca        60
     ataaatgaaa ccaacaaaac tcgtcgaaag gccggtgcaa taaagtaaag tgaatataaa       120
     gtgaacagtg aaagctttta aacgaagaaa gcagtcagag acaactacgg cagcagcggc       180
     tactctacaa caaccgacaa caatctacaa caacctacaa ggacctacaa caacctacaa       240
     aaacctacaa caacctacaa caacctacaa ggacctacaa caacctacaa aaacctacaa       300
     catcctacaa caacctacat ttcataaaat acaaaatagt aaactagtat aaaatataat       360
     tagcacttaa taacctattt aaattagaaa atattgttaa gcaaataagt ttggtataaa       420
     ccatcttaat tcattgtaag tataacgcat attgaatgat tcaaaatttt catattcctt       480
     attacatatt cactattatt atattatcta ttattatatt attatctgtg caaattgacg       540
     acaaaaacac atgagcgaca gtgaaataat tttagacgac ctcctgttaa atttgaataa       600
     atggtcagtc catcagtcgc ggcggttaga gagttcaaag gaaaacaact cttcagaaaa       660
     taattggtgg tcaaaaaaaa atatagatag cgaaatggag ttaagagaag ctcagttaaa       720
     aacgatcgta gaaagtgctg ttggcggtgc gcttgcagtt caaaaacaat catttgaaaa       780
     aaaattacag gagcttagtg agcaaataca aaaacttaca gttgaaaccc cagaggtgga       840
     aacttacaca gatgccgtaa tcatagaagg tgttgtgtgt aaggaaccct tggatataat       900
     aaagtctctc ccagactttg agggcaaatg tgaaacttat gtgtcgtgga ggaaagcggc       960
     tcatgtcgcg cttaaagttt ttgaaaaata cgagggcagt tcaacatact accaagctct      1020
     tggcattatg cgaaataaaa taaaaggctc agcaaacacg gtgttggctt cttttaatac      1080
     gccgttaaat ttcaaagcaa tgatcagccg tcttgatttt acatatgccg acaaaaagcc      1140
     ggcttatcta attgaacagg agctatcaac attacggcag ggtgacatga cacttactga      1200
     attctacgac gaagtcgaaa aaaaattaac cctacttact aacaagacat taatgacatc      1260
     cgataatgcc ttggcgatgt cactaaatga aaagtacagg gttgacgcgt tgcgtgtgtt      1320
     tataactgga gtaaagaaaa cgttgagtga tattcttttt gcgaaaggcc caaaagatct      1380
     accgacagca cttgctttgg cgcaagaggt tgagtctaat aatgagcgtt acaaattcgc      1440
     ccttaattac tcgagaaaat taggagacag aggtcagaga accgatcata gacacaacga      1500
     tagtgataga aattcattta tgcccattca aaacaaaaac ccttatttta catacgatag      1560
     tcaggaaagg caaggtcgca gccagtcaat taatcaggat gtttctatgc gcactattcg      1620
     aacgggccaa gataagttta ggcaaacaca ttttccgact caggaaaatg tttggccacc      1680
     tctgcaagaa aatgtttggg catctgaaca aaataatgaa tggccaacac acaaccaaaa      1740
     cgcatggcaa cctaaacaga acgcacgtca gtctcaagca cacactggtt atgcacaagc      1800
     atcaaagaga ccaaatagtg gcactgcaag gtttacagga ccaaaacagc aaaggattaa      1860
     tcacttagct catggggaag gtcaaggtag gaaaaacgcc gacgattatc atcaggaggc      1920
     cgaagcggca gttgaagatt ttgacgacga gctcacatgt tatgataatg ttcatttttt      1980
     agccacaggt ccctgctacc gtacatagaa agaaagatag cagggcgaac cataaaactt      2040
     ttgatcgaca ccggggcttc aaaaaactac atacggcccc ttcccgaact aaaatacacc      2100
     acgccggtac aaaacgaatt cgcagttaaa tcgttacatg gntgcaatac ggtaaaatat      2160
     aaattcttta ttaatctttt taatacagat gttcccttct tcattctccc agacctttct      2220
     agctttgacg ccataatagg acttgactta ctgacgcagn caaacgcaat cctagatttt      2280
     aaaaccaaaa ctctaaaaat caacaatgaa gtcgagccaa ttaaattttt gaggtgtgat      2340
     ngtgnaaatn tcaccaatat caatgacatt gtggtaccaa accggatacc caataanttt      2400
     nacacaatgc ntagagtgca accgaatggc tgtcttcgca gagccggaag aagcnctgcc      2460
     gtataatacc aatattatng ctacaatacg taccgaagac gatcaacccg tgtactcaaa      2520
     acacttaata tacttnatcc gtacccggta ggcgtaacag attttgtaaa tgaggagaca      2580
     aaacatttgt taaaagacgg aattatcagg ccctcgacgt caccttacaa taatccagtt      2640
     tgggtagtcg ataaaaaagg tacagatgaa aagggaaatn cgaaaaaaag nttggtcatt      2700
     gattttaggg agcntaactt aaaaacagtc gacgacaagn accctatacc aaatgtagta      2760
     tccatcctgt caaatttngg aaaggccaag tattttacaa ccctggacct taaatcggga      2820
     ttccatcaaa tcctgctggc ggaaagggat agggagaaaa cagccttttc aattggaaat      2880
     ggaaaatatg agttttgcag attgccgttt ggcctaaaaa atgctccaag tatatttcaa      2940
     cgtgccatag atgatgttct tagagaccag atagggaagt catgctatgt ttacgttgat      3000
     gacgtgatca ttttttcgaa agatatggag gaccacgtga atgacattgc gtgggtactg      3060
     gagaaacttt ttaaggccaa catgagggtc tctaaagaca aatctttttt ttttaaagaa      3120
     agcgtagaat atcttggatt tacagtaact agcggaggta ttacaaccag tcctagtaaa      3180
     gtagatgcta tcaaaaacta taagcaaccc acaaatttgt tcagtgttcg atcattctta      3240
     gggttggcaa gctattaccg ctgctttatc aaggacttcg catcggttgc aaaaccccta      3300
     actgacattt taaaggggga aaacggaaaa atctccgcca gccagtctaa aaaggttcca      3360
     attagctttg atgaaaaaca atgttttgct tttgagaagc ttaagaatat tcttttttct      3420
     gaaaatgtaa tgttactgta tcctgattac aagaaaccct ttgacctaac tacggacgct      3480
     tcggctcttg gcctgggtgc agtcctttct caggatggca agcctataac aatgatttca      3540
     agaacgttac gggatagaga gcttaatttc gcgacaaatg agcgagaact tctggccatc      3600
     gtttgggcct taaagtctct taggaactat ctgtatggtg tcaaaaactt aaacatttat      3660
     acagaccatc aaccgttaac attcgccgta tcggatagga acccaaatgc taaaatcaaa      3720
     aggtggaagg cgtttataga cgagcataat gcccaaattt tctacaagcc agggaaagaa      3780
     aactttgttg ccgatgcact atccaggcag gccatccatg ttttagaaaa cgacccccag      3840
     tcagacaacg caacaataca tagcgaaatt tcactgacat ataccatcga aacaattgac      3900
     aagcctgtca attgtttcag gaaccagata gttatagaag aaggtacagc agacttaacc      3960
     cgctctttta ttatttttgg aagaaagtca aggcatatta tccaattttt gaacaaggaa      4020
     actttactag ggagaattcg tgatgtggtc aagcaggatg ttgttaatgc actacactgc      4080
     gaattacccg tacttgcttt gattcagaac agtctcgtag atgagttccc agcaacaact      4140
     tttcgacaca caaaaaaaat ggtcattgac atttataata acgcagaaca aaaagaaatt      4200
     gtagctacag agcacaacag agcgcacagg gccgcgcaag aaaatgtaaa gcaaattctt      4260
     cagagttatt ttttccctaa aatgtcacaa ttagccgcta gttttgtagc taactgcttg      4320
     gtatgtcaaa aagccaaata cgaccgtcat ccgcagaagc aaatccttgg cactacacct      4380
     attccttcac acgtaggcga gaccttgcac atcgatattt tctccacaga cagaaagtac      4440
     tttttgacat gcatcgataa attttctaaa tttgctattg tgcaacccat agtttctcga      4500
     accataactg atatagaacc tgcaataatg cagttgatga acttttatcc tcattcaaag      4560
     actatatttt gtgacaatga accgtctata aattccgagt caatcaggtc acttgtttca      4620
     aatagattta atgttgagat agcaaacgca ccaccactcc atagcacttc aaatgggcag      4680
     gtggaaaggt tccacagcac gcttttagaa atagctcgct gcctgaaact tgaaagaggc      4740
     atgagcgata cggtcaacct catacttcag gccactatcg aatacaacaa aacaattcat      4800
     tcagtgacag ataaaaggcc gatcgacatt attcattcaa tttctcctga atttgcagac      4860
     gaaatcaaag gaaaggttaa agaagctcag gagatacagc taaaaagaat aaacgaaaca      4920
     aggcgagaca gaacttttga ggtgggagaa accgtcctag tcaaattgaa caaacgtctg      4980
     ggaaataaac ttaccccacg atataggaca gaaacgatcg aagcagacct tgggacaacg      5040
     gtcctcataa aggggagggt cgtgcataaa gacaatttac gttaaaatca ttgaacatca      5100
     attaatcgtt taaattcttt agtcttgttg tttatctttt gggctgacaa ccgcaaaaaa      5160
     aaaaaaaaca ctaaaacact gataacaaag tttgcaaacg tttatcaatt aaacatttga      5220
     ccaatcttaa tatatatttt tttttgtttt gttttgcgtc atcctcttta gcatagccaa      5280
     agagaaatgc tacactaatg atttcaaagc ctgcgcaaac agagattttt caatcaatta      5340
     gcgttctaca aataccccta aaacaaattt tcatatttta tatattttca tatttttgta      5400
     gttattactg tgaatttaat tattatttta agcttagaat atctaatatt taataagggt      5460
     cttaaacact ccagcggtat agacaaagga atcctaaaca ttttcaagat catcgttcca      5520
     gtcctcacag ttaagaagtc tgaggacagc cttcgactaa gaaagggagg agttaacaca      5580
     atcaccc                                                                5587
//
ID   Gypsy-40_DAn-LTR repbase;    DNA;    INV; 418 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_DAn_;
KW   Gypsy-40_DAn-LTR; Gypsy-40_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-418
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 314-314 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 418 BP; 158 A; 70 C; 69 G; 121 T; 0 other;
     tgcggcaaat ttatttaata tattttctca tatagtcgta agacccgatc ttgggaagta        60
     gtgtaagaca agctttattt gggtagttgt aagaagagct ttagagataa gaatatttcg       120
     gtactatgtt ttcgtcagta gatttaacat tagagataag aacatttctg tacccagttc       180
     agtcgatttt tgtagatcaa atgcgccggt catcaccacg caagactcat attaaaactc       240
     aacccacaaa accacgtgga tagatattac ctaataaatc gttcacgcta aacagcggag       300
     cggacaaaga aaactaatta actaagacaa accaaaactt attaattatt attaaataat       360
     aaatcgttca cgctaaacag cggagcgaat aaataaagtt atttactaaa ataaatca         418
//
ID   Gypsy-40_DEl-I repbase;    DNA;    INV; 2052 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2052
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 480-480 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..222,191..445,427..867,704..1219,1147..1620,
FT                 1645..1878,1918..2049)
FT                 /product="Gypsy-40_DEl-I_1p"
FT                 /note="ribonuclease H, and integrase."
FT                 /translation="SSHKYYILLNKCTNKGILPDDKKYNVIIKYPVPSNAD
FT                 ESRRFVAFCNYCRRFIPNFSHYSRHLTHLCKKIVTFNLTFARKLLHLIECQ
FT                 KAFEYLKNALIQPTLLQYPDFNKEFSITTDASKQACGAVLTQSYDGVDLPI
FT                 AYASRTFTKGESNKSTTNKNVNNEQELAAIHWAVNHFRPYVYGKPFTIKTD
FT                 HKPLTYLFSMKNPTSKLTRMRLDLEEFQFTAEYLKGKNNYVADALSRISIE
FT                 ELEDINRQILKVTTRFQSRQKNKNCAVSKXDSDLQKQPTASKPKIFDVIRG
FT                 KSSDLAFNSIKLFPKSLQDSKVDRKIKTAQFQNXIRICKSNRQLLSPKYLT
FT                 SFAGKVVTLHLTASNCSLKKGKKIYARIKVHDLYTNGXFDLDQFFQRLEKT
FT                 AGINKINQLKMAPSEKIFEIISIDIFNKILMNLRVALLKPVTTINNKKEKE
FT                 AILSRLHNDPIQGGHTGITKTLAKIKRHYYWKTSNTRWTYRNYENASKNKT
FT                 TLLLENLTRDVANHVKKCIQCQQAKTTKHTKTPLTITETPLKAFDRVLVDT
FT                 IGPLPKSEQGNEYAVTLICDLTKYLVAIPIPDKSAKTVAKAIFESFILKYG
FT                 PMNTFITDMGTEYKNSVINDLCQILNIEEIKFQTREYITKXKTAKTNIPID
FT                 KHTKDFKLXVGDKVLLKNKTGHKLDNQYLGPYVVIEINPKVNIKIKDNKNK
FT                 QQIVHKDRLKPFNSFIKYNFTKVLFLTKRTTLLTFISLKKINFTFDKHFNI
FT                 PLYFITY"
XX
SQ   Sequence 2052 BP; 855 A; 344 C; 287 G; 560 T; 6 other;
     tcctcgcata aatattatat cctcctaaat aaatgcacaa ataaaggaat tttacctgat        60
     gataaaaaat ataacgtaat aattaaatac cctgtccctt ctaatgcaga tgaatcaaga       120
     agattcgtag ctttttgcaa ctattgcaga cgttttatac caaatttttc tcactactca       180
     agacacttaa ctcacctttg caagaaaatt gttacattta attgaatgtc aaaaagcctt       240
     tgaatatctt aaaaatgcat taattcaacc aaccctctta caatacccag atttcaataa       300
     agaattcagt ataacaacag atgccagtaa gcaagcttgc ggagcagttt taacccagtc       360
     atatgatggg gtagacctcc caatagcata cgcctctaga acatttacaa aaggcgaaag       420
     taataagtca acaacgaaca agaactagca gcaatacatt gggctgtaaa tcatttcaga       480
     ccatatgttt acggtaaacc cttcaccatt aaaacagatc ataagccttt aacatattta       540
     ttttcaatga aaaacccaac ttctaaatta acaagaatga gactagatct agaagaattt       600
     caatttacag cagagtacct gaagggaaag aacaattatg tggcagatgc cttgtcaagg       660
     ataagcatcg aagaacttga agatattaat agacaaattt taaaagtcac tacaagattc       720
     caaagtagac agaaaaataa aaactgcgca gtttcaaaat magattcgga tttgcaaaag       780
     caaccgacag cttctaagcc caaaatattt gacgtcattc gcgggaaaag tagtgacctt       840
     gcatttaaca gcatcaaatt gttcccttaa aaaaggaaaa aagatatatg caagaataaa       900
     agttcatgat ctatatacca atggaawatt cgatttggat caatttttcc aaaggctgga       960
     aaaaacagcc ggtataaata agattaacca acttaagatg gcaccgagcg agaaaatctt      1020
     tgaaattatt tcaatagata tattcaacaa aatattaatg aatttaagag tagckctact      1080
     caagccggtg accacaataa ataacaaaaa agaaaaagaa gctatactgt ctagactaca      1140
     caatgatcca atacaaggtg gacatacagg aattacgaaa acgctagcaa aaataaaacg      1200
     acattattat tggaaaactt gacacgtgac gttgcaaacc acgtgaaaaa atgtattcaa      1260
     tgccaacagg ccaaaacaac gaaacataca aaaacgccct tgaccattac agaaacacct      1320
     cttaaagcat ttgatagagt gttagtggat acgatcggtc cattacctaa atcagaacaa      1380
     ggaaatgaat acgcagtcac cttaatttgt gacttaacaa aataccttgt agccattcca      1440
     ataccggata aaagtgcaaa aactgtagca aaagctatat ttgaatcctt tattctaaag      1500
     tacggtccaa tgaatacatt tattacggac atgggaaccg aatataagaa ttcagtaatc      1560
     aatgatttat gtcagatact taatatcgaa gaaatcaaat ttcagactcg agaatacata      1620
     taaaagagca cgataaatga ttgaacaaaa tamaaaacgg caaaaacaaa tatacctata      1680
     gacaagcata ctaaagattt taaattakaw gtaggagata aggttttatt aaaaaacaaa      1740
     acaggtcata aattagataa ccagtattta ggaccctatg tagtaattga aatcaatcca      1800
     aaagttaata taaaaataaa agacaataag aataaacagc agatagtaca taaagatagg      1860
     ttaaaaccgt ttaattcata gaacatataa ctcctaaatt ttattaaatt ttattaattt      1920
     attaagtata attttactaa ggttttattt ttaacaaaac gcactacttt attaactttt      1980
     atttcattaa aaaaaataaa ttttactttt gataaacatt ttaatattcc tttatatttt      2040
     attacatata ca                                                          2052
//
ID   Gypsy-40_DWil-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_DWil_;
KW   Gypsy-40_DWil-I; Gypsy-40_DWil-LTR.
XX
NM   Gypsy-40_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-441
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-441
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
SQ   Sequence 441 BP; 149 A; 92 C; 76 G; 124 T; 0 other;
     tgttgtatgt tgtatgccaa atgagcatat gcccacagta ttgtagagta tacaatataa        60
     caagtggtca tatgctcaac attaaagtaa gagtaacata ccaacacttt gttgctatgt       120
     ttatgcaacc attcataata ataatatgat ccgccactta tgcggactgg ccgctgagcg       180
     tgggatcgct agcgtaagca cttttgacta tgtaccctct gtacatatat gctaacacat       240
     acaaacatat atactgcaac acactctctc tctctgccag cgccctaagc ggcagaatgt       300
     attcaataca tataagatgt ataggctaaa actagcatat gaataaactg tccagacaat       360
     tctggatgac ggctcgaaca gaacagttgc gttttatttt aacataaacg gatttaacaa       420
     aaacttaatg cgcacataac a                                                 441
//
ID   Gypsy-40_LMi-I repbase;    DNA;    INV; 9326 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-9326
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1688..2395,2399..4666,4549..5031,4878..5762)
FT                 /product="Gypsy-40_LMi-I_1p"
FT                 /translation="MRSFPRYGESYESFRQYFLASYWSENQQDRVRHNIQM
FT                 MPPFGQSNFASPAEFFQDMLNKNYYLTNPYPVPELIRICLGKLPRRLRNAL
FT                 LAGRCKDDVEQFQALLEDLDFDYDPPQNNFPVKQGKGNNNNQNQVPEKEQN
FT                 NGSNRQSWGNGQRTQQNGQWRNQNENGYKSDXRGKKKRKWGNGNNWHSDNN
FT                 EPRDENSKRVHWERPNTPPQGVEVRSPDPKHNKKPDAQPGPSTSKQRSRSV
FT                 PSCSESDDEQGTEQVRLIGFDDLREVLLEEEPEPSDNLIQPVLTISVRDVE
FT                 LRCILDTGSVVSVISEAAYERCQAVASWPELPLQRTKVKGALVGRSVEVRR
FT                 QAEIEFSCQGHVFVANFIVVPSLVVDVLLGVEFLVAHHTTLHFGEGEARLR
FT                 LNQKEIRLKFSECTTRLSSAGLCCHFLSDYRAIYSPDPVLSEYDDPYILLV
FT                 DCEKVDVLAEIDRKMSSLEGAPPQAKTNLDSILRKHATVFSDAPGTIKGFQ
FT                 YKFKVRPHNKFFVKPYQIPWVYKREVEEEIARMLADGVIERTASSYNSPLL
FT                 IVPKKDKSIRLVLDSRQINTIIEPETDRPQTLDELLQKFHGVRVLSSIDLR
FT                 ASYWQIELDPACRPYTAFLCFGTCYQFRKLPFGLNISSAAFIRGFHSILPE
FT                 ELRRRITTYVDDVLIAENSWESHNQVLDQLLHVFQQSGVTVNLRKSEFGRP
FT                 QVNFLGHIITREGILPDASKLDAIRDFPVPTTKKQVRAFLGLVNFYKKFLP
FT                 LQIMGTPSLCALTSKNKPWKWDADAQSEFESVKQALLAAPLLAHPDLSKDF
FT                 CLGTDSSKTGIAAELFQEFEEDGVVRRKTIAFASRVLTKCERNYSVTELEA
FT                 LAVVFGFTKFRGFLFGRTTRVYTDHRALQFLMSAKLTHGRLARWALYLQEF
FT                 RFTVVHIPGKENVVADALSRSPVGLTQGSNDEPNENNYSLFYLRGVAFENF
FT                 ISASLHDIAREQDKDPVLKDVKAYGVTTTIRRLGTITKFHFRFPPRHSAGT
FT                 RQGPSSERREGLWRDNNNPSIRNYYLIRNNVLFRRSNPGKSNWVVCIPDEL
FT                 VNKLIWYTHLSYAHYGPRKCFVKLRDTCYFPNMEKRIRKVLAVCKAVRSPR
FT                 LPQCLTLPLCFPLSLLVYEKLLPWICLVPYHGQLVDTVTYSLPSSGCQKSK
FT                 APTVSHLAPLFPIIPSRLREIAAVDLFGPLPRTAGGHSYIFVAVELTSKYV
FT                 TLTPLKRATSRSVSHAFVKDFLSQVGYVEKVLSDNGPQFRSPVWKRTLQRR
FT                 RIKPIFISVYHPESNPCERVMKELGKLCRLYCYRRHRAWDQYIQGFQHVIN
FT                 ELPSDSTSMPPRLVLKNECAEDKVREIVPLDPPVKLRHSEVVKRAIEHIKQ
FT                 AAEKRRQYDKKHRVVRYFEVGGKVLVRSRRLSNKRLALTRKFFPVFVGPFR
FT                 IRRIVHENAVELETIRTRKSRGVHHVSSLRHFKE"
XX
SQ   Sequence 9326 BP; 2343 A; 2159 C; 2345 G; 2475 T; 4 other;
     cttggcttac cgctgccagg attcgtcctt ctggcgtctc ctgatttcat ttttaaattt        60
     tgtttctttc tctagatgcc ctcccgtcct ttgaatgtgt gtgtgtgtgt gtgcgcatgt       120
     gaatgagtag aaatcgcaag cgctagtgta cttccattgt gttttcagcg cgcattgcca       180
     gtgcatttgt tttctctttc agcagtgatc attttctggg ggaaataatt gtcgagttta       240
     cgcagtgtga aacgcgggtg caattacgac tgcgttgcgt gcgaaaacaa ttttgcgtgt       300
     gaaactctta cagaggcacc acgtgttctg accacgtggg tggctaggaa cttgttgctt       360
     tggtatttca ttgtgaatat tttaacgtgc gtgtgaatat tttaacgtga tttcaaaaat       420
     ggatagcgtt tcagtttcag caattgaaac acgtaggcga accgctctta aggagcaagg       480
     aaaggaaaag cgtgataggt cgcaggaatt agattcggtg gcactgaaaa tcagcacgtt       540
     gccttaaatg acgctgcgaa cgcgggagat gtttctcaaa cagaaaataa tctttccttt       600
     gaaaaccgcg tacaaagcgc aggcgatggg tcagttagag acgagcaggc cgccagaagc       660
     cccagccggg cccctcttgt gttatggatt atgggaatac ccagcggcgg ccgcttgtcc       720
     caggtaccgc gctacccgac gcgctcaccg cccttttcaa acaaatgacc gcgcagattt       780
     ccgaacaaat gagagagcag tcgaaaaggt cgccgaacgt tttgctaaaa tagaccaacg       840
     cactaacgac cagtttcgcg aaatgaaaga gcagtcgaaa caggtcaccg aacaaatcgc       900
     gaaagattga tgagcgactt gacaaatgaa agaacaggtc gcgaatcaag aggcgcgggt       960
     attacaagaa atgactagcc tccgcgagca actggctgag ggagtaagca ggaacagcgc      1020
     ggagatagaa actataaaat cacgcgttga gagcgtagag acgcgggtcg gcggtcttgc      1080
     cgaacacgtc gaagccgtga ttcgcgtgtc gacgacgtgc tcacgcaggt gaacactgtg      1140
     cgtgaacacg tggaaaaggt tcaaaccagt atcggtgcgg tttctggccg cgtcgatgtt      1200
     gtgaccgctg cagttactag tgtgcagagc acgctagatg atgtcgtgca aggattgcat      1260
     gggtagaatt aaaccccgtg cagcccttaa acgagaattg caaccacgct gacgaaccac      1320
     gtgtgcgcgt ggctcggcag caagaggtgc ccacgtgcaa taacagccac gcggcacttg      1380
     tagcagccgc gacgggagcg caggccgcga ttccgattct gcttttgagg acgagagtga      1440
     gcctccccgg gcaagctcga gccgtgctca aaacaggact gcacgttgta atcgggaccc      1500
     agcaccgggc ttcgattaca accactttct aaccgtgcgc aaatttgaag tattccggaa      1560
     cgcgcccggt ggaatacatc cgcaggcgtg ggtagaccaa tttgacttct cgcttccgcc      1620
     gaactggccc gaagggcata aaatcgagtt cgtgcgcgga cacctggaag gcgaacccgc      1680
     gacgcgaatg aggtcgttcc cacggtatgg cgaaagctat gagagcttcc gccaatactt      1740
     tttagcttcg tactggtccg agaaccagca ggaccgcgtg cgccacaaca tccaaatgat      1800
     gccscccttc ggacagtcga actttgccag tccggccgag ttcttccagg acatgttaaa      1860
     taagaactat tatttaacca acccctatcc ggtgcctgaa ctcattagaa tttgtttggg      1920
     taagctgccg cgacgtctgc gcaatgctct cttagcaggg agatgcaaag acgacgtgga      1980
     gcagtttcaa gccctcctag aagatctaga ttttgattat gaccccccgc agaataactt      2040
     tccagtcaaa cagggaaagg ggaataataa taatcaaaat caggtaccgg agaaggagca      2100
     gaataatggt tctaatcggc agtcttgggg aaacggccag cgaacccagc aaaacgggca      2160
     atggcgcaat caaaatgaga acgggtacaa aagtgactwc cgcgggaaga aaaagcgcaa      2220
     gtgggggaac ggcaataact ggcactccga taataacgaa ccgcgcgatg aaaattccaa      2280
     gcgcgttcac tgggaacggc cgaacacgcc tccgcagggt gtggaagtgc gttcgcccga      2340
     cccgaaacat aacaaaaagc cagacgcgca acccggacca tcgacgtcaa aacaatgacg      2400
     ttctcgctct gttccttcct gctcggagtc tgacgacgaa caggggacgg aacaagtcag      2460
     actgataggg tttgacgact taagggaagt cctcttagag gaggaacccg agccgagcga      2520
     taatctaata caacccgtcc tgacaatttc agtcagagat gtggagctac gatgcattct      2580
     cgacacaggc agtgtcgtat ccgtaataag tgaggcggca tacgagcgct gccaagcagt      2640
     ggcatcttgg ccggaactcc ccctgcaacg caccaaggtt aagggcgcct tggttgggcg      2700
     tagcgtagag gtacggaggc aggccgagat tgaattctcg tgtcaaggac atgtttttgt      2760
     ggccaacttt atcgttgtgc cgtcactagt tgtagatgtg ttgctcggtg tggaattttt      2820
     ggtggcacac catactactt tgcactttgg cgaaggcgaa gcgcgccttc ggctgaatca      2880
     gaaagaaatt aggttaaaat tcagcgagtg caccacgagg ctgagttctg cgggtctgtg      2940
     ttgccacttt ttatcagatt accgggcgat atactcgcca gatccggtgc tctcggagta      3000
     tgatgacccg tatatacttc tcgttgattg tgagaaagta gacgtcctgg ccgagatcga      3060
     ccgaaaaatg agttcgttag agggtgcccc accccaagcg aaaactaatt tagattccat      3120
     tttgcggaaa catgcgacgg ttttctccga tgccccgggc acgatcaaag gctttcaata      3180
     taagtttaaa gtgcggccac acaacaagtt ctttgtgaag ccataccaaa ttccatgggt      3240
     atacaagcgg gaagtcgagg aggagattgc gcggatgtta gcggacggcg tcatagaacg      3300
     cactgcgagt tcatataaca gtccattgtt gatcgtcccc aagaaggata aatcgatcag      3360
     gcttgtcctg gattcgaggc aaataaacac cataattgag ccggagactg atcgaccgca      3420
     gacgttagat gaactcttgc agaaattcca cggcgtccgt gtgctctcct cgatcgactt      3480
     gcgggccagc tactggcaaa tagaactgga ccccgcttgt cggccttaca cggccttcct      3540
     ttgcttcgga acctgttatc agttccgaaa gcttcctttt ggccttaaca tcagttctgc      3600
     cgcctttatt cgtggctttc actctatttt accggaggaa ttgcggcggc gcatcaccac      3660
     ctacgtggat gatgtgctga tcgcggaaaa ttcatgggaa agccacaacc aagttttaga      3720
     tcaactattg catgttttcc agcaatcagg ggtaacggtt aatctgagga aatcagaatt      3780
     cggtcggccg caggtcaact ttctcgggca catcattacg agagagggta ttcttccgga      3840
     cgctagtaaa ctagacgcaa tccgagactt tcccgttccg acaacaaaga agcaagtgcg      3900
     tgccttcttg ggtctcgtaa atttttacaa aaagtttcta cctcttcaaa tcatgggtac      3960
     accttccctc tgcgcactca caagtaaaaa caagccgtgg aagtgggacg cggacgcgca      4020
     atctgaattt gaaagtgtta agcaagccct tctggctgcg cctttgctag cacaccccga      4080
     tctttccaag gatttctgcc ttggaacgga cagttcgaag accggaattg ctgccgagct      4140
     gttccaagag tttgaagaag acggggtagt gcgccggaag acaattgcgt tcgcgagtcg      4200
     tgttctcact aaatgcgaga ggaattactc ggtgacagag ctggaagccc tagcggtcgt      4260
     cttcggattt accaagttcc gtggatttct tttcggccga acgacgaggg tatatactga      4320
     tcaccgtgca ttgcagttcc tcatgtcggc gaaattgacg cacggacggt tggccaggtg      4380
     ggcgctctat ctccaggaat ttcgtttcac ggttgtacac atacccggga aagagaatgt      4440
     ggtggctgac gccctttctc gttccccggt gggtttgact cagggatcca atgatgagcc      4500
     taatgaaaat aattacagcc tgttctattt gcgtggcgta gcttttgaaa atttcatttc      4560
     cgcttccctc cacgacatag cgcgggaaca agacaaggac ccagttctga aagacgtgaa      4620
     ggcttatggc gtgacaacaa caatccgtcg attaggaact attacctaat taggaataac      4680
     gtcttgttcc gccgtagcaa ccccgggaag tccaactggg ttgtgtgtat accggatgag      4740
     ttggtgaaca aactcatttg gtatacacac cttagctacg cgcactatgg gccccgtaaa      4800
     tgttttgtta agctccgtga tacctgctac tttccaaaca tggaaaagag gatccggaaa      4860
     gttcttgctg tttgtaaggc tgtcagaagt ccaaggctcc cacagtgtct caccttgccc      4920
     ctctgtttcc cattatccct tctcgtttac gagaaattgc tgccgtggat ctgtttggtc      4980
     ccctaccacg gacagctggt ggacacagtt acatattcgt tgccgtcgag ttgacctcga      5040
     aatatgtaac tttaacccct ttaaaaagag ccacgagcag gtctgtatca catgcatttg      5100
     tgaaagactt cctgtcccaa gttgggtacg tcgagaaggt cttgtctgac aacggtcctc      5160
     agtttcgctc tcctgtctgg aagaggacgc tccagcggag gcgcataaaa cctattttca      5220
     tttccgttta tcacccggag tcaaatccgt gcgagcgcgt aatgaaagaa ctggggaaat      5280
     tgtgccgctt gtactgctac cgacgtcatc gcgcctggga tcagtatata caggggttcc      5340
     agcacgtcat caacgagttg ccgagtgatt ctacctctat gccgccgagg ctcgttttga      5400
     aaaatgaatg tgcagaggac aaggtacggg agatagtacc tcttgatcca ccggtcaaat      5460
     tgaggcacag cgaggtggtt aaacgtgcca ttgaacatat caaacaggcc gctgagaaaa      5520
     ggcgccagta tgacaagaag catcgtgtag tacgctactt tgaagtcggg gggaaagtct      5580
     tggttcgttc ccgtcgtttg tccaacaagc gtcttgctct gacgcggaag ttctttccag      5640
     tttttgttgg tcccttccgc ataaggcgga ttgttcatga gaacgcggtt gaactggaaa      5700
     caatacggac ccgaaagtct cgtggtgtgc accatgtttc tagtcttaga cattttaaag      5760
     aatgattgtg ttttttcttg tgtattttct ataggttaca ggttccatgt atattttgta      5820
     tgtgttttat tgcgttaatt gtgtattttg tatgtgtttt ccactgtttt tcggcgttaa      5880
     agaacgcgcc gacaatgtgt cgcgtagaag acgcatttgt aatatttgtt atcctgcata      5940
     tgagtatatg cagcgctggg tgagataagt tgtgttctgt acaatcagct gacgcgtgag      6000
     gcatgctgat tcggtgcgcg cacttaaatg ttgtggcacc gtcagtaatg tcggctccgc      6060
     taaacagacg tttgattgct actttaccgt ggagcgcctg tgtaatgggt aaatttagtt      6120
     taattttcag tcgttcgtgc gtgttattca actgctgcac cagatatgcg atctaagtac      6180
     aattagtacc aaaacaaagt gtaatatttt agggtgtacc tttcttttca gctgtgctac      6240
     gtaaatttaa tgttttaggt tgtattgatg tccagtaccg tcagtgagtg aatgggaaag      6300
     gcatgttcct ccagagcagg gaggacggta attagtactg ccacagccag tatgtgtgcg      6360
     ccctgtgtcc ttgaaattgc caatgtgttt ccttttgtaa gtcgccgtaa cggtgccgcc      6420
     tcccggacag aaacgggtta gcgcttggtg aagcgaagaa ggtgttaagg aacatgttgt      6480
     gtgtcgttgg gacaagggtt taatgccaag tgggtggcgt atctaattta ccaattaatc      6540
     aagaacccgt aacgcaagct ttaacatgac gaacttaact gtgtgcatcc ctaacggaat      6600
     tttccagttg tattttgcag gaaactgtga tcgccgccat ataataggtg agaaggacgt      6660
     actgaagaat ctagcttacc aggcccactt gaattttgtt gacgagaaaa agtacgcagc      6720
     ccagtgtaca atgtcgagcc catgattaat gcgaccasag cgcgagacga gtgcccgaat      6780
     ttggaacacc attagcagta taaattagga atatgtactc taaaatgatt ttcttttgta      6840
     aattttagct ggaacctagg taacatgttt aaattttatg atgctctttt aatgataagc      6900
     cttgaactag gccatctaat cactagtgtg tgtcttgatt tatgttttta caggcagatt      6960
     gtgatttgta tgtttgactt aatcaactgt gttttatttt ctttattgtt ccaggtgttt      7020
     atgtattttc atgtcttgtt ttagtgtttc tctgattata ggattaggat gtcaatttat      7080
     ccatttgttt attttaatac caagcttaat tttaacgaga atttatgttt ttatgtattt      7140
     tgagattttg tctatagaat gttttaagga atcgagggac cgctggagca gtcatcacat      7200
     cgtgacgctg ctgctccaaa tggacagtaa gcgagtgtag tgccactaat tatacaaaat      7260
     tgtctttagt tctgtaaaga ttctacaggt actcgccgga gagacaggag caatccagtg      7320
     atctgcaagg ggtcggaaac taaatagtag cattgcgttg ggcccaacat ttagtttgca      7380
     tagtagatta cagcagcgcg accttagcct gctggcaggt caatttaatt tgatattatg      7440
     taaccacgcc gcgcgcgcca ctctgcttct gctatctgct tcttgccaac gtttgccgct      7500
     tgcgcctcct tgtgtgtgtg actgtgagtg tgtctctgca aagcctgtgg ccacagcatc      7560
     aacattacta aattagcttt gtttaagtcc ctgtgattgt actatgtaat ttcttaaaca      7620
     tttctcawat gttaaaactt tctttgataa gtattgggtc acgttttgta aagcctatgg      7680
     acccgagtag tctagtttat ttaaggtttt gtaatttact ttaatgttct cacctatttg      7740
     tttataaatt atctgtgtaa tttcatattt ctatgttgat gtgatgtgag tgatgaacac      7800
     cactggacaa cgaatattcg tgataatgaa gtgttttcta agtgccaagg aaagagttcg      7860
     tgcacgccac actgctgcag aatacggccg gcgcctcggg cgccggccgc ccgacgccgc      7920
     gagaaccgag gtggcacggg gttcccgcct tctacgtcac gcggcaaccc caccgagtca      7980
     taccggccag cagcgcgtcg ccgacagcgc tgggggagcg ggcgcccagc tctgccgcag      8040
     cccccggcac tacgtcacag gtcactggga cacccgccac gcttccggca ctggctggca      8100
     gcgggtcgcg gtgaagtggg cgtgtctggg cctcccacgc gcccgatggc ggagggcacg      8160
     gatgacgcac gctcctgtca gtgcggtggg cagcgccccc tgatgcagcc gtcgcctgca      8220
     gccgggctac tctgggaggc gaggtcggcg ctggtccggc tgccaacacg caccctgctg      8280
     cacgccactc aacgagagca gcaggggcac aacacagatg tctggcgtct gtcacaacca      8340
     gaccagttgc tgcaagtatt agacatcgat gcatggcatc gcccacctta cttccaagtt      8400
     ttctagtgat ctaccactcc tattctgaca caaaacatta ttttggttcg ccccaacatt      8460
     ctctccgcac tctgtgactt agcgagtgac ggaagactaa tgaacctcct tgcttaacac      8520
     acttccgtgc ttcggcactt aggaattcca catccttggg tcctgcttgg atgtcggaac      8580
     ctcacaaatc ctatgccacg aaggcgtggc actacctctt gtgatcgctc gccattgagg      8640
     gtgctcacaa aattcctctt cctctgtgcc taatgcaaga tgatgactga tccaaacatt      8700
     ggcgctgagt cagagaggaa gagacgtcgg cgaggcgaga tgcacctgga gctggaaaga      8760
     gggacaatca actacgacca tggacactga acgacaactt ggcagtagta aagtgttaaa      8820
     taagtgcggg ttgtagtttc cacccagtta tcccgaagag tacatcctcc ccatcgatgc      8880
     ccctaagttt ttatcgaagt gtgtggcgaa tatttaatca ttaaattttt tcaagaaagt      8940
     gaacactcac catagtgaat cgaacttgat ttcttttttt aaagacactc ccaggagtga      9000
     aaagcttatc atgattgtct tatttatctt tattgtaact tttgtttatg catgtattgt      9060
     tacctccaat ttcttgacca actttttgcg caccaccttc tttactattt ttaaatttgt      9120
     ttaaataatt taaaatgttt gctcatgttt gtttaaatgt ttcttaattt atcattttct      9180
     ttgacacaag atgcccatag ctgcccacaa tgcccagagt agataatttt taatttttgt      9240
     tgtgtgtgta actaatttta atctggatcc aatccagtat aacaggattg gttccagact      9300
     gtttatcgcc cctaagcgga gggtga                                           9326
//
ID   Gypsy-40_LMi-LTR repbase;    DNA;    INV; 1800 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1800
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 1800 BP; 392 A; 372 C; 387 G; 648 T; 1 other;
     tgaaacacgt ccactgattg tgtggtcgtg ttccattttg atttattcat taacctaaag        60
     tgtttctgca ccattaatgt tatctatctg tgtgttaatt attttattct ttttattaat       120
     gatcaatgcc ccatgtttat atatgtttgc cccatattta tatatgtttc cacccgtgtg       180
     attgaacttg tgtgttcatg tgaatgtgga aggttgcttt taatattgac tgactgccgc       240
     gcaatggctt acagtcgccg cctcccgctt taggcctcgt tttgctgtag ttaagaacgc       300
     atggcttcgt ttgtcgtctg cgctggcgtc tgctggctgg ccagagacaa gcttacttgg       360
     caaggtggcg aggtggccgt gttcttagtg tcgtaccaac ctaatcttgg acgaaagagg       420
     tgacaggaga cctctctggg agcggttgta gagggaattg tcttggccag gtagcaaggg       480
     ttggtaaaca ctagtctctg aacgcactct gcgtcgcttt tagcgcgctc tacatccggt       540
     gtatggcggg gggaggtttt tccgtggcct tagagcttca ctcttcattc tggctccgac       600
     gaccgtggaa gtaagtactc cgccgaatca tgctgagggg aaggcatgct gttaggactt       660
     tgmtttcttt gtgatcaggc agtcttggtt tttcagtgat agttctcttg agtaattctt       720
     tcgctatgcg aggcgaagtg tttcttaatt tacagaactc gagtaaattc agtgtaaatt       780
     tattatttgc attttcattc cagtgatgat tgtgtgtccg gttttgctca agttagaata       840
     cacgtgtgtg gccttcagcc tttgtgtaaa cctagtatgt ttgaatttcc ttcgtgtttt       900
     taactaacgt tttcgcgtcg tttctgtatc cgcgagtatg ctaaatattt ctcagatttt       960
     ctgatttgat tccgtctttc ctgtcttgta tgaccgattg caccacgtgc tttcgtaacg      1020
     gtcgttactt cggccttcag ccatgctttt gttaatacta gctttcttct atacgaattc      1080
     tcgcgtgtgc tttactcgct tattctaaat taatttctgt ttgtaaatgc tatgaaattc      1140
     ggcgtggtcg cacaccacgt ggtacttaag aatagtgagc cgctgcctcc ccacacatga      1200
     gttcgtttag tgcacagtgt acttaaattt gtgatcaaga cacccgccat ctcgtcaaga      1260
     cgccgccgac gcttcgtttc gccgctgctt tcaagtgttc cgcattgtaa tgtaccgcca      1320
     agcattatgc gcgtgtctgt gaatgaatga atgtgctttc agctacccat tgtgtatttg      1380
     aaaatttcct cccacattac ctccatattc ataaagggca gaaacaattt tattacgggc      1440
     agtaattata tgatttaatt cacttttgta caaggtgtgt gcttaatttg gtctccccac      1500
     atttatttgc ttggttattt tactgaatag attatgattt taaagtatca aacctctgct      1560
     ttatgatttc atgctcccca tcccatgttt aattatctat tcatttattt tttaacattg      1620
     attttgtgtt tgttaaaacg ttggctgctc ccttaaggag tgagcagtta gataaatttc      1680
     cgttgcgcat gtactgtggc cactcataaa gtaatttaga gcagcagtga gcgttttaac      1740
     ttacatttgc agatctcaac tgcccgagat cttgcttatt ttaataacag gctactttca      1800
//
ID   Gypsy-40_MoPha-I repbase;    DNA;    INV; 4686 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4686
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1164-1164 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..1012
FT                 /product="Gypsy-40_MoPha-I_1p"
FT                 /note="gag."
FT                 /translation="MPKTWIYLTPKDELIATLRRLGLDTNGTLDEIRRRLS
FT                 DYVTQHPGEFPAMSLPPGTSTDAPRIIIDTPATESTRESTAKAMNQIRKWG
FT                 CHFDGKDPMSFLERIDELKTGYEYDDRQLLRGLPELLKGEALLWYRNNRQN
FT                 WGAWDDFVREFRDYYLPHRYITQLRREIQARTQKPGEKYRKFATEILTMMR
FT                 RAGGYSTIEQLDMLYENMEPRYKLYVRREEIHRPNDLLTRAENFETLEEQC
FT                 KARQTPQKEIVAAATSYDKNECCWRCKQRGHTRFDCRRIPRKFCSQCGKDG
FT                 VLTRDCHPPPGNATRAEGSAVAPRPSE"
FT   CDS           841..4038
FT                 /product="Gypsy-40_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLLAMQATRTHQIRLPTHTAEILFAVWERRGTNEGLS
FT                 SATGKRHQGRGKRGRAPSLRIIYKPRPHLPLRIRGRPFLALLDTGSEASFV
FT                 SPQTAAILETDGFPTKPATGRVHLANGSNTHITGYMTLPVATSGPEIWHDF
FT                 QIMPGLDAEILAGVDFWARLRQAIPPPPIKRAYAATPRQVAGACHGGLTPS
FT                 EQRRLREFLDTELPLFENVRGPTDRIQHTIRVHGHPPIKQRYRPRNPAMQA
FT                 IIDTEVEGMLREGVIEPSRSAWSSPIVIVKKKDGKPRFCVDFRRVNEVTEP
FT                 DAYPLPQIAATLDKLRGAKYLTTLDLKSGYWQVPLDTASRPVTAFTVPGKG
FT                 LFQFRVMPFGLHSAPATFQRLLDAVLGPELEPHVFVYLDDIIIVNSAFDEH
FT                 IRTIQEVFRRLREARLRLNPDKCKFCVDQLTYLGHVVDREGIRTDPDKTKA
FT                 IAEWEPPRNVKQVRQFLGIASWYRRFVKNFASVAAPLTALTKKNAPWEWGA
FT                 KHQEAFNDLKRTLTTAPVLACPDFSRQFVLQTDASTTGLGAVLTQNFPEGE
FT                 RVIAYASRTLNSAERNYSATELECLAVVWGIRRMRCYLEGYRFKVITDHQS
FT                 LRWLSHIDSPTGRLGRWAFELQQYNFEIQYRKGTLNRVADALSRRHATHAI
FT                 TLPDCAWYRRTWRAVRNAPREHPDLRIEGNRLRKHLLHTLDFRDTPPETQW
FT                 KECVPTKERGELLRRYHDEPTAGHLGVAKTIARIAEHYYWPGMFGEISRYV
FT                 RRCRECLAHKPAQTRPAGLLHPTTVTRPWQQVTIDLIGPLPRTTRGNTWVL
FT                 TMQDRFTRWLEVRTLRRASASSVVSSLSEAIILRHGCPEEILSDNGTQLRS
FT                 SLFEQLLVKSGIRHRLAPAYAPHCNPVERTNRIIKTMMAQYVRRNHRAWDE
FT                 HIGEFQFAYNTARHDATGYSPAFLLYGRELRRPTEPATEGRTPRHSLQQRL
FT                 QEAYELVRIKTARAFQHQEKYYNLRRRDWRPKIGEWVWKRDHPLSKRADAF
FT                 NAKLAPKFIGPLEVRRIVSPVIVDLRGSSGKWYRHIHTQDLKVADPPQAAV
FT                 TEDVNTSEE"
FT   CDS           4060..4641
FT                 /product="Gypsy-40_MoPha-I_3p"
FT                 /translation="QKRPKKKEKRGPSRAVPEARNREHLTSLETMDRDEIL
FT                 AAINAFLEEPEEYDPAQPGFDRLGTNTAPPPPEPPAPKVALVGYRKGRLVQ
FT                 PSDRRNTEKNAWLTEPPPTRPRRPPSTTPPPPRPTLEPVRVYGPAPPPPIL
FT                 VEVAPGITVDVPHFAVHVSRQYKARLGNRRWHLRFDRVGRLRSCKEKSYAP
FT                 TAGP"
XX
SQ   Sequence 4686 BP; 1133 A; 1544 C; 1270 G; 738 T; 1 other;
     ttggcgcccg aacagggact cgaggaaaca cgtgccgtga gacaatagac cagccatgcc        60
     gaaaacgtgg atctacctca caccgaaaga cgaactaatc gccacgctac gccggctcgg       120
     cctcgataca aacggaacgc tcgacgaaat ccgtcgtcgc ctgagtgact atgtcacaca       180
     acacccgggg gaattccccg ccatgtcatt accgccggga acatcgacgg acgcgccacg       240
     cattataatt gacacccccg cgaccgaaag cacccgcgaa tctaccgcta aagccatgaa       300
     tcagatccgt aagtggggat gccacttcga cggaaaagac ccgatgtctt tcctagaacg       360
     aatagacgaa ttaaagaccg gatacgaata cgacgaccgc cagctgctcc gcggactccc       420
     ggaactgctc aaaggagagg ctctcctctg gtaccgaaac aaccggcaaa actggggggc       480
     ctgggacgat ttcgtacgcg aattccgcga ctactatctg ccccaccgct acatcacgca       540
     actccgccgc gaaatacagg cgcgcacaca gaaaccggga gaaaaatacc ggaaattcgc       600
     aactgaaata ctcacaatga tgcgacgcgc ggggggctat tctaccatcg aacagctcga       660
     catgttatac gagaatatgg agccgcgata caaactctac gtacgccgcg aggaaattca       720
     ccgtccgaac gacttattga cacgcgccga gaatttcgag acactcgaag agcagtgcaa       780
     agcgcgacag accccgcaaa aggaaattgt cgccgccgcg acaagctacg acaaaaatga       840
     atgctgctgg cgatgcaagc aacgcggaca caccagattc gattgccgac gcataccgcg       900
     gaaattttgt tcgcagtgtg ggaaagacgg ggtactaacg agggactgtc atccgccacc       960
     gggaaacgcc accagggccg agggaagcgc ggtcgcgccc cgtccctccg aataatttat      1020
     aaaccgcgac cgcacctacc actacgaatc cgcggccgtc cgttcctcgc gctcctggac      1080
     accggctcmg aggcctcttt cgtcagcccc cagaccgccg ccatactaga aaccgacgga      1140
     ttcccgacaa aaccggccac cggtcgcgtc cacctggcca acgggtcaaa tacccacatc      1200
     acgggctaca tgaccctgcc ggttgcgacg tccggccccg agatctggca cgactttcaa      1260
     atcatgccgg gcctcgacgc cgaaatcttg gccggcgtcg acttctgggc acggctgcgc      1320
     caagccattc ctccgccgcc gatcaagcgc gcctacgctg ccacaccgcg gcaggtggcg      1380
     ggggcgtgcc acgggggcct caccccaagc gagcagcggc gcctccgcga attcctagac      1440
     acggaattac cgcttttcga gaacgtgcgc ggacccaccg accgcatcca gcacacaatc      1500
     cgcgtacatg gtcacccacc aatcaagcag cggtaccgac cgcgcaaccc ggccatgcag      1560
     gccatcatcg acaccgaagt agaggggatg ctccgcgagg gggtgattga gccctctcgc      1620
     agcgcgtgga gctccccgat cgtgatcgtc aagaaaaagg acggcaaacc tcgtttctgc      1680
     gtggatttcc gccgcgtgaa cgaggtcacc gaaccagatg cctacccgct gccacagatt      1740
     gcagccacac tcgacaagct ccggggggca aagtacctga ccacgttaga cctaaagagc      1800
     gggtactggc aggtaccgct cgacaccgcc agccgcccgg tgaccgcgtt caccgttccc      1860
     ggaaaaggcc tattccagtt tcgagtgatg ccgttcggcc tgcactccgc ccccgcgacc      1920
     ttccaacgcc tgctggacgc ggtcctggga cccgaactcg agccgcacgt cttcgtatat      1980
     ctagacgata ttatcatcgt caacagcgcg ttcgacgaac atatccggac gatacaggaa      2040
     gtgttccgcc gtctccgcga ggcgcgcctc cgcctgaacc ccgataaatg caagttctgc      2100
     gtcgaccagc tcacgtactt ggggcatgtg gtagaccgcg aggggatacg caccgacccc      2160
     gacaagacca aggccatcgc ggaatgggaa cccccgagga acgtaaaaca agtacgtcag      2220
     ttcctcggga tcgcgtcatg gtaccgtcgg ttcgtgaaga acttcgcctc cgtcgcggca      2280
     cccttgaccg ccctgacgaa aaaaaacgca ccatgggagt ggggcgcgaa gcatcaggaa      2340
     gcctttaacg acctcaagcg caccctgacc accgccccgg tactcgcctg ccccgatttc      2400
     tcccgacagt tcgtcctaca gaccgacgcg agcacaacgg ggctgggcgc cgtgctgacg      2460
     cagaactttc ccgaggggga gcgagtcatc gcatacgcta gccgcacttt aaattccgcc      2520
     gaacggaact atagcgcgac cgaactggag tgtctcgcgg tcgtttgggg catacgaaga      2580
     atgcgctgct acttggaagg gtaccggttc aaagtcatca ccgaccacca atccttgcgg      2640
     tggttgagtc acatcgattc accgactgga agactcggac gctgggcatt cgagctccag      2700
     caatacaatt tcgaaattca ataccgtaag ggcacgctga accgagtggc agacgcgctc      2760
     tctcgccgac atgctacgca cgctattacc ctaccagact gcgcgtggta ccgtcgcaca      2820
     tggcgagccg taagaaacgc accccgcgaa catcccgacc tccggataga gggcaaccgc      2880
     cttcgcaagc acctactcca cacgctggat tttagagaca ccccaccgga aacccagtgg      2940
     aaggaatgcg tacccacgaa ggaacgcggc gaactactgc ggcggtacca cgacgagccg      3000
     accgcgggac acctgggggt cgcgaaaacg atcgcgcgca tcgcggagca ctattactgg      3060
     ccgggtatgt tcggcgaaat ctcgcgatac gtccgccgct gccgcgaatg cctggcgcat      3120
     aagcccgctc aaacacgtcc cgccggcctg ttacacccca cgacggtcac acgaccctgg      3180
     cagcaggtga ccatcgacct gattggcccg ctgccccgca ccacgcgagg gaacacctgg      3240
     gtgctgacga tgcaggaccg cttcacccgg tggctcgagg tgcgcacact tcgacgcgct      3300
     tccgcgagca gcgtcgtttc tagcctttcc gaggccatta tcctccgcca cggatgccct      3360
     gaggagatcc tctccgataa cgggacgcag ctgcggtcgt cactatttga gcagttactc      3420
     gtaaagagcg gcatccgcca ccgactggcc ccggcgtacg ctcctcactg caaccccgtc      3480
     gaacgcacga accgtatcat taaaacgatg atggcgcaat acgtccgtcg gaatcaccgt      3540
     gcctgggatg agcatatcgg ggaattccag ttcgcgtata acaccgcgcg acacgacgcc      3600
     acgggctact cgcccgcatt ccttctctac gggcgcgaat tacggcgacc caccgagccc      3660
     gccaccgagg ggcgaactcc gcgacactcc ctgcagcaac gcttgcagga agcgtacgag      3720
     ctcgtgcgaa tcaagaccgc gcgcgccttc caacatcagg aaaaatatta caacctacgc      3780
     cgccgcgact ggcgaccgaa aataggagag tgggtgtgga agcgtgacca ccccctctcc      3840
     aaacgcgcgg acgcgtttaa tgccaaatta gctccaaaat tcattggacc cttggaggtg      3900
     cgtcgcatcg tctcccccgt tatagttgat ctgcgaggat cgagcgggaa atggtaccgg      3960
     cacatacata cacaggattt aaaggtcgcc gaccctccgc aagcagccgt caccgaagat      4020
     gtaaacacat ctgaggaata agagacaacg acccgataac aaaaacgacc gaaaaagaaa      4080
     gaaaagaggg ggcccagcag agctgtaccg gaggcgcgaa acagagagca tctcacttcg      4140
     ctcgaaacaa tggaccgaga cgagatcctc gctgcgataa atgcattcct ggaggagcct      4200
     gaggaatacg atccggcgca acccggattt gaccgactcg gcaccaacac cgcaccaccg      4260
     ccaccagaac caccggcacc caaggtcgca ctggtaggct accggaaggg acggttagta      4320
     cagccgtcgg accggcggaa tacggagaaa aacgcctggc tcaccgaacc accaccgacc      4380
     aggccacggc gaccaccatc aaccacgcca ccacctccgc gtccgaccct ggaacctgtg      4440
     cgggtgtatg gtccggctcc tccaccgccc atcctcgtcg aggtagcacc ggggatcaca      4500
     gtggacgtac cgcattttgc agttcacgtc agccgccagt ataaggcccg cctaggcaac      4560
     cgtcgctggc atctacgctt cgaccgcgtg ggccgactac gctcctgtaa ggagaaatcc      4620
     tatgccccca cagcggggcc ataggcgcct cgaatgcagg cgctatctaa cggggggggg      4680
     gggtga                                                                 4686
//
ID   Gypsy-40_MoPha-LTR repbase;    DNA;    INV; 1039 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1039
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1204-1204 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1039 BP; 249 A; 372 C; 246 G; 171 T; 1 other;
     tgtaacgaac ctcccgtccg ccggcatcac cgaccgcgcg cggtccggcc gaacatccgc        60
     cggaccgcac aaacgggcac cggcccgtcc taatcgtccg cattaaaagc gtcgagacga       120
     gacatcgtct ccgctccgcg tatttccccg cacgctccca acctccacgg ggggggggag       180
     caagtgcggg gaaacccgaa gatccgcgag gatccccgat cctccacccg agcgggtata       240
     aaaagccgct ccggtggagg ctgcgacact tctcgctccg accgtacgct ggattccgat       300
     tccgaccaga gtacgatcct gagaagcttc ctgcgaccgg caaatagggt agagtgttct       360
     ccgccttaac cgagagctct cggtaccgct cgcactccag atcccaatcg tctccgtagc       420
     agagggtaga gcgtactccg ccttcgccga gagttctcgg ctacggactt tccttaatcg       480
     cccgatcacc aggctcgaac acaacggggg tggagagctc tccgcctccc tcgagagatc       540
     tcgagatcga ccaggtgttt tcctcaaaaa tctcgaaaga aatcatcgcg cagcgtaaac       600
     agcccgcgcc tcacgccgca caccgcgcac caccggtctc gaggcaccgg cggttaccgc       660
     ccgccacacc gctcgcctca ccgcgccacg aagcgccgct tcgcgcgcca gggcattgcc       720
     cgccggcccg tcaccgcgca ccgcgatcat caccaagcga aacacacacg cgacagcgaa       780
     acagctgttt tgcccgcgac acgaaaactc acacatacac acgcacatac acacacacac       840
     accacacttg taaatagcac attccgccac acgactcctc atacacaccg acacaccaac       900
     gactgtaaat agcttgtaca taattgcaag gcattgaaat atakatctac tcgtaataaa       960
     actgcgtcta ttgtctcagg gaccttctca cacccgatcc tagcagacta agcccgcgtg      1020
     ggaaatacgg tccgttaca                                                   1039
//
ID   Gypsy-40_MSe-I repbase;    DNA;    INV; 4239 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4239
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 917-917 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..4185
FT                 /product="Gypsy-40_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSKIIGNLNSFDHKENDWKIFFGKLNNFIKLNCIKNE
FT                 NWCAILLTHLSDESYRLVQNLVHPRQVEEVSWDELIKLLDGHFTPKRSTFA
FT                 DRAKFYDATRNDGESLEDWAARLRGLAIYCDFGTELETLLRDKFILGLKMG
FT                 PERNRLFEQDLKSLTLSKALEIAQQVSCARAARASVGVIEQPVKQEHVYRA
FT                 GERQAYKVQTTSRSSTDIRCFVCGMKNHLADKCRFKDYRCISCGEKGHLKK
FT                 MCSVRKNKVLLNNVVAMGDHNNVCKECDLFNVRYVNYDPLKVDIIINYKTF
FT                 SMELDCGSGRSVMSEEFYVQNFKKCRLLPSDIVFCLYTKHKVTPLGHFSCE
FT                 VEYNNLIRLITFYVIKEGGPPLLGRDFMSMFNMSLVCVSDNNNILNVKPNI
FT                 NEVQQILDDFPEIWKDELGCFNKFEVDLHLKENAVPKFFKARPIPFALKNK
FT                 VEEELDRLVNAGILVPVQFSEFATPIVPVLKDNGTVKIAGDFSCTLNKVLK
FT                 IDKYPLPHIQEVFAKIGGGQHYSKLDLSNAYNQFCLSKSSQELTTINTPKG
FT                 LFKYTRLVYGLANAPAIFQRAIETLVAGIDGVSCWYDDICLTAPNRSLHLA
FT                 RLRELLYRLNEAGLKLRKDKCALFQESVTYLGYVIDKNGLKTCPKKVEAIL
FT                 KAPTPSNTTELRRFLGVVNYYRNFIKNASSLLHPLHELLKEGEKWCWENRH
FT                 SRALEAIRIELTSDRVLAHFDPQAPLLLTVDAGPAGLGAVLAHLTPEGFER
FT                 PIAFGSRSLTSSEKNYSQIQKEATAIIYGVKHFHQYLYGRQVPFILKTDHK
FT                 PLLSIFGQKNGISVTAALRLQRYAIILSAYNYTVQYISNQNNLVADYFSRA
FT                 PVPHSGTESSNNIEESHIPFLFMNATTEPVSFERIKHATVHDKVLQIVINY
FT                 MNRGWPRKITCTRLKPYFMHKSDLEVIKGCLFRGHRIVIPCIYRETILQDL
FT                 HSAHFGIVKTKNIARSRMWWPGIDRDIERLVGSCRACCALLSAPPRALPAP
FT                 WPRPSAPWHRIHIDYMTVGQTVYLVIIDAFSKWLECINMNCGTSTSALIVK
FT                 LKDIFSIFGIPNVIVSDNDIKISSSEFQIFCKNNGIIYLNSPIYHPSSNGQ
FT                 AENSVRTCKKMLKCIFNIKGNISQRQIHDELIGFLFEYRNTPHCATGVTPA
FT                 ELMFGRKLRSRLDMVLPQQKENYQESVNNVNSLNKARCFSIGETVWVQWFS
FT                 ARTVKWVKGRITDKIGKRMFKIYFDKFNTCCVRHLDQIRKCIQNCNNTSNL
FT                 DENSSVDSLSIHSDXAQKPVTTMQDNPVNSEREGEEDGDKWEEARENVADM
FT                 DSVTSDKPESKSPSKVALVPDESVSKSPSENIHXEPDDQMDDNIGALGRTL
FT                 RPKRNVDYKKFYFIT"
XX
SQ   Sequence 4239 BP; 1304 A; 708 C; 927 G; 1297 T; 3 other;
     attggcgacg aggatactta ccctttgcgt gatttaaaaa aagtaacaat tatgtcgaaa        60
     attattggaa atttaaatag ttttgatcac aaggaaaatg actggaagat tttttttggc       120
     aaattgaata attttattaa gttgaactgt attaaaaatg aaaattggtg tgctattctc       180
     ttaactcatc tctcggatga gtcatatcgg cttgtacaaa acctcgttca tccaagacaa       240
     gtcgaagaag tatcgtggga tgagttgatt aagttattgg acggccattt cactccaaaa       300
     cgctcaacgt ttgctgatag agcaaaattt tatgacgcaa ccagaaatga tggtgagagt       360
     ctagaagatt gggcagcgcg cttacgagga ctagcaatat actgcgactt tggaacggag       420
     ttggagacgc ttttgcgtga taaatttatt cttgggctca aaatgggacc agaaagaaat       480
     cgtttatttg aacaagattt aaaatcgcta acgctctcta aagcgttaga aatagctcaa       540
     caggtttcat gtgctcgcgc tgcgcgtgct tctgtcggtg tcatagagca gccggtcaag       600
     caggagcatg tgtatcgagc tggtgagcgt caagcataca aggtgcaaac tacgtcgcgg       660
     tcgtcaacag acattcgatg ttttgtttgc ggaatgaaga atcatcttgc agacaaatgc       720
     cgttttaaag actaccgttg tattagttgt ggtgaaaaag gtcacctgaa gaaaatgtgt       780
     agcgttagga agaataaagt tcttctaaac aatgtagttg ctatgggaga ccacaataac       840
     gtttgtaagg aatgcgattt gtttaatgtg aggtacgtaa actatgaccc tttgaaagtt       900
     gacataatta ttaattataa aacgttttca atggagctag attgtggttc cggtcgtagt       960
     gttatgtctg aagaatttta tgtgcaaaat tttaaaaaat gtcgtttatt accgtctgac      1020
     attgtatttt gtctgtacac taaacacaag gtcacacctc ttggacattt ttcttgcgag      1080
     gttgaataca ataatttaat acgattaatt acattttatg taatcaaaga aggcggtcct      1140
     cctttattag gtcgtgattt tatgtcaatg tttaatatga gtttagtgtg tgtgtcggat      1200
     aataataata ttttaaatgt taagccaaat attaatgagg tgcagcagat tcttgacgat      1260
     tttccagaga tttggaagga tgaacttggg tgttttaata aatttgaagt cgatttacat      1320
     ttgaaggaaa atgccgtgcc caaatttttt aaggcacgcc ctataccatt tgcccttaag      1380
     aataaggtgg aggaggagtt ggataggcta gttaacgcag ggattttagt tccagtacaa      1440
     ttttctgaat ttgcaactcc gatagtaccg gttttgaagg acaatgggac ggttaaaata      1500
     gccggtgatt tttcttgtac attaaataag gtattaaaaa ttgataaata tccattgccc      1560
     catatacaag aagtttttgc taaaatagga ggtgggcagc attattctaa gcttgactta      1620
     agcaacgctt ataatcagtt ttgtctttct aaatcctctc aggagcttac aactattaat      1680
     acgcccaaag gtctttttaa atacacgcgt ctagtgtatg gtctcgctaa cgctccggct      1740
     atatttcaac gagcaataga aacgttagtt gccggcattg acggtgtttc ttgttggtat      1800
     gatgacatat gtttaactgc tcccaatcgt agtttacatt tggctaggct ccgagagtta      1860
     ttataccggt tgaacgaagc cggtttgaag cttcgtaaag ataagtgcgc tctgttccag      1920
     gagagtgtca cgtacctagg ttacgtcata gataagaacg gtcttaaaac ttgcccgaaa      1980
     aaggtggaag cgattttgaa agcccctaca cccagtaata caacagaatt aagaagattt      2040
     cttggcgtag ttaattacta taggaatttc attaaaaacg cgtcgtcatt gttacaccct      2100
     cttcacgagc tattgaagga aggtgaaaaa tggtgctggg agaatcgcca tagtcgggcg      2160
     ctcgaagcta tacgtattga gctcacgtcg gaccgtgtgt tagctcattt cgatcctcaa      2220
     gcaccactgt tgctcacagt agacgctggg ccggccgggt taggcgcagt tttagcacat      2280
     ttaactcctg aaggttttga aaggccaatt gcatttggtt ctcgttcatt aacatctagc      2340
     gaaaagaatt atagccaaat tcagaaggag gccactgcga ttatttatgg tgtaaaacat      2400
     tttcatcaat atttgtacgg acggcaagtt ccttttattc twaaaactga tcataaacct      2460
     ctactttcaa tttttggaca gaaaaacggc atttctgtaa cggccgccct tagacttcaa      2520
     cgatatgcga taatattatc agcgtataat tatacagttc aatatataag taaccaaaat      2580
     aatttagttg cagattattt ttctagagca ccggtacctc atagtgggac tgaatcttcg      2640
     aataatatcg aggagtccca tattccattt ttatttatga atgcaaccac agagccagtt      2700
     tcttttgaac ggattaaaca cgccactgtg cacgataagg ttttgcaaat cgtgattaat      2760
     tatatgaatc gtggttggcc acgtaaaata acgtgtacaa gacttaagcc ttattttatg      2820
     cataagtcag atttagaggt tattaagggt tgtctttttc gagggcatag gattgtaatt      2880
     ccttgtattt atcgcgaaac aattcttcaa gatttgcatt ctgcacattt tggaatagtg      2940
     aaaactaaaa atattgcgcg tagtaggatg tggtggccag gtatagaccg cgatatagag      3000
     cgtctcgtgg ggagttgcag agcgtgctgt gcgctgctga gcgcaccgcc gcgagcgctg      3060
     cccgcgccct ggccgcgtcc gtcggcgccc tggcaccgta tacacataga ctacatgact      3120
     gtaggccaaa cggtatatct tgttattata gacgctttta gtaaatggct agaatgcatt      3180
     aatatgaact gcggcacctc aacaagcgca ttgattgtga aattaaagga tatattttcg      3240
     atttttggaa ttccaaatgt tattgtatcc gacaacgata ttaagatatc ttcctccgaa      3300
     tttcagattt tctgtaaaaa taatggcatt atatatttaa actctcctat atatcatcct      3360
     tctagcaatg gtcaagcaga aaactcagtt aggacgtgta aaaagatgtt gaaatgcatt      3420
     tttaacatta agggaaatat ttctcagcgc cagatacatg atgaactaat tggttttttg      3480
     tttgaatatc gtaatacacc tcactgtgcc actggagtta caccagctga attaatgttt      3540
     ggccgaaaat taagatctag gttagatatg gtattaccac aacaaaagga aaattaccag      3600
     gagtctgtta ataatgtaaa cagtcttaac aaagcgagat gttttagcat tggtgagacc      3660
     gtgtgggtgc agtggttttc tgctcgaaca gttaaatggg ttaagggaag gataactgat      3720
     aaaataggga agagaatgtt taaaatttat tttgataaat ttaatacatg ctgtgttagg      3780
     catttagatc aaattaggaa gtgtatccaa aattgtaata acactagtaa tctagatgaa      3840
     aacagttcag tagattcatt gagcattcat tctgatwtag cacaaaagcc tgtgacgacc      3900
     atgcaggaca atcctgtgaa ttctgaaagg gaaggggaag aagatggtga caaatgggag      3960
     gaggctaggg aaaatgttgc agatatggat agcgtaacat ctgataaacc agagtctaag      4020
     agtccttcca aggtagcttt agtgccagat gaatcagtct ccaagagtcc ttctgagaat      4080
     atacatwctg aaccggatga tcaaatggac gataatattg gggctcttgg gcggacactt      4140
     agaccaaagc gtaatgtaga ttacaagaaa ttttatttta ttacttaatt atatttgtgc      4200
     tattgtgatg ttacagttct aaaattaatg aggaaggaa                             4239
//
ID   Gypsy-40_MSe-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-163
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 966-966 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 163 BP; 54 A; 11 C; 25 G; 72 T; 1 other;
     tgtggtattt atataataag aagttatata attttatgtt ataacctttt tggtgttttg        60
     gttctttatg aaaaagaaat agattgtcag tagttatgaa attggttctc aataaaatgg       120
     cttttccttg cgtattttaa taattwgtat taaaaatatt aca                         163
//
ID   Gypsy-40_SiCu-I repbase;    DNA;    INV; 8058 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-8058
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4975-4975 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..985
FT                 /product="Gypsy-40_SiCu-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MSKPARVPVVPKTFSGSRDQDAEKHLLQYERAGDCNS
FT                 WTDDMKKQYFPVYLDSTAAQWYQNYERTHPPVVSGSGSTATTAPGFTYTQL
FT                 KDAFKNAFTSIARVEFAEQRLSARKQNIGESPEQYVYEMVELCKAVDNGMA
FT                 EDKIVRISIKGLLPSYLDRVNLMDPTNISDLLTAIRKVQETQYLIQHRNDS
FT                 SEIVAVERETNIMKEMLMQMQQMMCKQTEILEKMADLQPQNLTPPQIRCYN
FT                 CRGLGHIARNCRPQYNTQNNNERPRSYQNQGNDFRRTAASSGPPQRPQQ"
FT   CDS           4688..6736
FT                 /product="Gypsy-40_SiCu-I_3p"
FT                 /note="Herpesvirus Glycoprotein B ectodomain."
FT                 /translation="MGHKSNVKWVLWPFLVYILSLYYIHCSTELKDLFDTL
FT                 EPKSTPLYSCTGWTDGIKYRVPSKMSCELIDVSKPSEVVNITLWWQSITMD
FT                 SISGYECYGQRATNEKAWFTFGAYYEMSNTVKINVSPEECWRMIRDKTSPK
FT                 GQRLVRIRDGHFGTDNVPKAEWDWADISKETVNNYFYVHQSLVISNEDESI
FT                 QTTTKIIETCSLKHLTCQTELGLLVWEKGEASKCRLKKGLSTSCILTDNRL
FT                 SCPEEYIAITDPHRITLCNKTFGYSAQGIIFTQDAGWHTSPNFTVSSTAEV
FT                 QSMLEDQSRKTKRSAIWEEYTCTEEEKAKKSKFCLFKKNPGNTFMPASQVN
FT                 AKLQYLYDLIKSNVTFNIQHLHSEICRTNKRQLEMLRILAQGGSTSLMVRV
FT                 LLDSDNYRSRLNGDVLSIYKCNEVYQYMFEPRDGCFSDWPVLYMEGGEKKR
FT                 GFLAPLSHEISQKSTPCPCPAPDFYFDAGDKVYLLTNRSIVSNLPVLPKPS
FT                 ERLNVSFLPDLSIQGVGAYDVSEISSQETIIELVRDMRNKYQIDGVLKAFE
FT                 EKRKYSTGELSILKSLERVTIEPVKRWVSGLFGGLISTILLVLGLYLLIKY
FT                 HEKVLAGLGFMWDKIKLLWSCFLRIIRRNQRTDANNDENGMEMTNRTAQSS
FT                 STAPPLENGDHSDENMYPDLAKTKPFFSKFKVKP"
FT   CDS           904..4638
FT                 /product="Gypsy-40_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KATIISKSGKRFSADCSFLRPAATTSAVDVHILLHPS
FT                 QIAKIKCKINLQEIEVIIDSGAAVSIIGDSYVXNEDITPLDAPIRLLSAHG
FT                 VPLSVRGTTAVIIEMQGAPPVRHEMYVIPNFKFKAILGVDFQEKYHTVLDY
FT                 KVHTFKFKNIDVPLLHVDGKEDMGAKEEQTESFLCNIEIEGTRTIERNNSI
FT                 RCLKRTAIRPKSVKLVAARASEQKACSFIIEPSSEHVWKKSLVIPRMFVRE
FT                 NIYEELLLPVCNVSNKEVIVPAGMRLGLVEWVEXSQECEVLSVKEKVECGK
FT                 EGEREELRNIINDELKASERDMVYEVVREYSDVFAREGEVGEIKGHFHEIK
FT                 LLPGAKPIKRMPYRKSPPLEKFEREKVQELLEKGIIEPSCSPWSMGVVLVK
FT                 EGHSDRXFRFAVDYRPVNRVTERDSYPLPNLQTVLDWVGANAGLISLLDLN
FT                 KGFWSIPLHKDSKPLTAFSISDGLYQFTRMPFGLANASSCFQRVMQSICVG
FT                 LLWSNTLVFVDDIIVIGKTIELHCENLRKVLQRFREFGVKLSTNKCKVAHT
FT                 KLALLGHLVSLDGIQPIESKVEAIKQLPSPMNQKGVRMVLGCFGFYRKFIQ
FT                 NFAKHASPLHHLLKKGVKFKWGDEEQNCFEKLKRFLTEAPVLAHYNESYQI
FT                 IVASDASGVGLGSCLMQVHPDGKERVVAYASRKLNPAEKNYDCTSRELLGI
FT                 VFSLKAFNYYLYSKPFIVRTDHRPITGIKFAKNEGNGRLVRWALFLQGYDI
FT                 TLEYRCGSQMKLPDLLSRMPVGDAEESEVAIPSLTIGLADMKEMQDEDTFC
FT                 KKIMNNNILKATYLVEDGVLYRILNEKKLLVVPKAFKGKLLNYIHSIPISG
FT                 HLGIKKCVAKLKEKYFWKGLVKDVIKYIEACGSCQERKPIPRRMGSLKPIH
FT                 SLRPWYMISSDIIGPLPTSSSGNRYIVVAICLFSKYAETMAIPNQEASTVV
FT                 EFLHNNVFCRHGAPKYLISDNGANYCSHLLREHNRKHGVVHRFTSPFHSEG
FT                 NGEAERFNRTIENIICKLTCNDDHSEWDKYLVDATFSYNTSIHSATRVSPF
FT                 ECIYGRRPDFPYDFALAEASNNWDEDKKEREENLAGVSKRLKEYQSKYQSR
FT                 ENKRRKTGSFELGDXVYLREPRVPGGLSRKLYRPFTLCRVERKISDLAYEV
FT                 RNEKTLELHRVNIKRLKPAHIKSDSSEDESGASEKEEEKIHRPIFSSSSSP
FT                 EXEKRKSPSKIPRYVTRTGRVVKTPSKYKDFVLYK"
FT   CDS           6912..7460
FT                 /product="Gypsy-40_SiCu-I_4p"
FT                 /translation="MMEGVAVSASCSKNKRRSLKRKREKRTLIRVRLHPEV
FT                 LLKQKARKKRSKARKKAASAEMCSSPYKQRHMVRSYKRQNRDVLQQEQYGG
FT                 IQSTRTEPGGTQHSQTRIPWRLRKVRLPVDISQEREIKRLERAREKEKAAQ
FT                 KDLRYAKYQELVGVCDIRGPRNREEVKNYTIINGYLQHRHSTQI"
XX
SQ   Sequence 8058 BP; 2669 A; 1460 C; 1792 G; 2120 T; 17 other;
     atggaggcac caccgagata tcctgttatt tcctgttttt gatagtccgg cacaaaaaaa        60
     ttgttcgctt tagtcattaa atagaatcac actttcgtta tttttatctg tcatcatgag       120
     taaaccggct agagttccgg tagttccgaa aacattttcg ggaagcagag accaagatgc       180
     agagaagcat cttcttcagt atgaacgkgc aggtgattgt aactcatgga cagatgacat       240
     gaaaaagcaa tactttcctg tttatttgga tagtacagca gctcagtggt accaaaatta       300
     tgaaagaaca cacccgccgg tagttagtgg tagcggatca acagcaacaa ccgcaccggg       360
     tttcacatat acccagttaa aagatgcttt caaaaatgca tttacctcaa tagcccgtgt       420
     agaatttgcg gagcaaagat tgagcgcacg taaacaaaat attggcgaaa gccctgagca       480
     atatgtctat gaaatggtag aactatgcaa ggcagtagat aatgggatgg cagaagataa       540
     aatagtacgc atctcaataa aggggctgct tccgagttac ctggatcgcg taaaccttat       600
     ggatccwact aacataagtg acttgctaac kgcaattaga aaggtccagg agacccagta       660
     tctcattcaa cacaggaatg attcgtcaga aattgttgca gttgaaagag agacaaacat       720
     tatgaaggaa atgctaatgc aaatgcaaca aatgatgtgc aaacaaactg agattttaga       780
     aaagatggca gacttacagc cacaaaattt aacgcctcct cagataaggt gttataactg       840
     cagaggatta ggtcatattg ccagaaattg taggccacaa tacaacactc aaaacaacaa       900
     tgaaaggcca cgatcatatc aaaatcaggg aaacgatttt cggcggactg cagcttcctc       960
     aggcccgccg caacgacctc agcagtagac gtgcatattc ttcttcatcc aagccagatt      1020
     gccaagataa aatgtaaaat aaacttgcaa gaaatagaag tcataatcga cagtggggcg      1080
     gcagtatcaa ttataggaga tagttatgta cawaatgaag atatwacgcc tctagatgcc      1140
     ccaataagat tattatcagc tcacggagtt ccgttaagtg taaggggtac aacggcagtt      1200
     ataattgaaa tgcaaggagc cccgccggtg cggcatgaaa tgtacgttat tcctaacttt      1260
     aaatttaaag caatcttagg cgtggatttc caagagaagt accacacagt tcttgattat      1320
     aaagtgcaca cgtttaaatt caaaaacata gacgtgccat tactacatgt tgatggaaaa      1380
     gaagatatgg gagcaaaaga agaacagaca gaatcattct tatgtaatat agagatagag      1440
     ggtacgcgta cgatagagag gaataattct attagatgtt taaaaaggac agcaatacgt      1500
     ccaaaatcag taaaattggt ggcagctaga gcttccgagc agaaagcttg cagttttatt      1560
     attgaacctt cctcagagca tgtgtggaaa aagagtctag tgatccctag gatgtttgtg      1620
     agagaaaata tttatgagga gttactgttg ccagtgtgta atgtgagtaa taaggaggta      1680
     attgtaccgg ctggcatgag attaggttta gtagaatggg tcgagasaag tcaagaatgc      1740
     gaggttttaa gtgttaagga aaaggtagag tgtgggaaag agggagaacg agaagagctg      1800
     aggaatatta ttaatgatga actgaaagcg agcgagaggg atatggtata tgaggttgtt      1860
     agagagtatt cagacgtttt tgctagagaa ggagaggttg gtgagattaa gggtcacttt      1920
     catgaaatca agttactgcc gggagcaaaa ccaataaaga ggatgccgta tcgtaaatct      1980
     ccacccttag aaaaatttga aagggaaaag gtacaagaat tattggagaa agggattatt      2040
     gagccttcct gctcgccttg gtcaatgggg gtggtactag ttaaagaagg gcattcagat      2100
     agawcctttc gtttcgctgt tgactaccgg cccgtgaata gagtgacaga gagagactca      2160
     tacccattac caaatctaca aacggtgttg gactgggtgg gagcaaacgc agggttaatt      2220
     tccttgcttg atttgaacaa gggattttgg tctattccac ttcacaaaga ttcaaagccc      2280
     ctcactgcat tctccatatc cgatggatta tatcaattta ccagaatgcc ttttggwtta      2340
     gcaaacgcga gcagctgctt ccagcgcgtt atgcaaagca tttgcgtagg attattgtgg      2400
     tcaaacacac tagttttcgt agatgatata atcgtcattg ggaaaaccat agaattgcat      2460
     tgtgagaatc tgagaaaagt tctacagaga tttagggaat ttggagtaaa gttaagtaca      2520
     aacaagtgca aggttgctca cactaaactt gcattattag gacatttagt ttcattggat      2580
     ggaattcagc ctattgaatc aaaggttgaa gccattaagc aacttccgtc accaatgaat      2640
     caaaaagggg ttaggatggt actcgggtgt tttgggttct acagaaaatt cattcagaac      2700
     tttgccaagc acgcgtctcc attacaccac ttattgaaga aaggagtaaa gtttaagtgg      2760
     ggcgacgagg aacaaaactg ttttgaaaag ctaaagagat ttcttactga agcacctgtg      2820
     cttgcacact acaatgaatc ctaccagata atagtagcga gtgatgcttc cggggttggg      2880
     cttggttctt gcttaatgca agtacatcca gatgggaagg aaagagtagt ggcatatgcc      2940
     tctagaaagc ttaacccagc cgaaaagaat tatgactgca cctctagaga actgctagga      3000
     attgttttct ctttgaaggc atttaattac tatttatata gcaagccatt tattgttcgc      3060
     acggaccatc ggccmattac tggcatcaag tttgcaaaga atgagggcaa tggaaggtta      3120
     gtacgttggg cactttttct gcagggctac gatatcacat tagaatatag atgcgggagc      3180
     caaatgaaac tacctgatct tttaagtagg atgccggtgg gagatgcaga ggaatcagag      3240
     gttgcgatac caagtctaac tattggttta gctgacatga aggaaatgca agacgaagac      3300
     actttctgca agaaaattat gaacaataat attctaaagg caacctattt agtagaagat      3360
     ggagtactgt ataggatttt aaatgaaaag aaattgctgg ttgtgccgaa agcatttaag      3420
     ggtaaactat tgaattacat acatagtata cctatttctg gtcatctagg aataaaaaag      3480
     tgtgtagcca aactcaaaga aaaatatttt tggaaaggac tggtaaagga tgtcataaaa      3540
     tacatagaag cctgtgggag ctgtcaagag cgaaagccga ttcctagaag aatggggagt      3600
     cttaagccta ttcattccct tcgaccgtgg tatatgatct cttcagatat aataggccct      3660
     ctgcctacat cgtcaagtgg aaaccgatat attgttgtcg ctatatgcct attttcgaag      3720
     tacgcagaaa ccatggccat accaaatcag gaagcaagta ccgttgttga gtttctacat      3780
     aacaatgttt tttgtcgaca cggagctccc aaatacctta tatcagacaa tggggccaat      3840
     tattgttcac acctcctccg agagcacaat agaaaacacg gagttgtaca tcgttttacc      3900
     tctccctttc attcagaagg gaacggtgag gcagaaaggt ttaatcgaac tattgagaac      3960
     ataatttgca aactaacttg caatgatgat cattcggaat gggacaaata tttagttgat      4020
     gcaactttca gctataatac ttcaattcat tccgctacac gcgtcagtcc atttgaatgt      4080
     atatatggtc gaaggcccga ttttccatat gattttgctc ttgctgaagc ctcaaataat      4140
     tgggatgagg ataagaaaga aagggaggag aacctcgcgg gggtctcaaa aaggttgaaa      4200
     gaataccagt ccaagtatca atcccgtgaa aataaaagga gaaaaactgg atcatttgag      4260
     ttgggtgata wggtatattt acgggaacca agggttccag ggggtctgtc aagaaaattg      4320
     tacagaccat ttactttgtg tcgagtggaa agaaagatat cagatttagc atacgaagtg      4380
     cgtaatgaaa agacactaga attacacaga gtgaacataa aaaggttaaa accagcacac      4440
     ataaaaagtg attcttctga ggatgaatcc ggtgcttctg agaaagaaga ggaaaaaata      4500
     cacagaccaa tcttttcttc ttcttcctcc ccagaagakg agaaaagaaa atctccgtca      4560
     aagatacctc gttatgtaac tagaacagga agggtggtta aaacgccttc aaaatataaa      4620
     gactttgtac tctacaaatg aaaagtttcc acgaattatg tatatactgt atattttgta      4680
     tttttagatg ggtcacaaat caaacgtaaa atgggtctta tggcctttcc tcgtgtacat      4740
     attgtcattg tattatatcc attgctctac ggaacttaaa gacctttttg atacattgga      4800
     accgaaatcg acaccactct actcgtgtac aggatggaca gatgggataa aatatagggt      4860
     tccgtccaaa atgtcctgcg aattgataga cgttagcaaa ccgtcagaag ttgtaaatat      4920
     tactctctgg tggcagagta ttacaatgga ttctatttct ggatatgaat gctatggcca      4980
     aagggcgacg aacgaaaagg cctggtttac ctttggagca tattatgaaa tgtcaaacac      5040
     tgtaaaaatt aacgtcagtc cagaagaatg ctggcgaatg atacgagata aaactagccc      5100
     aaaggggcaa cgtcttgtga ggattaggga tggtcacttt ggtacagata acgtaccaaa      5160
     agcagagtgg gattgggcgg atattagcaa agaaactgta aacaattatt tttacgttca      5220
     tcagtcattg gtcattagca atgaagacga gtccattcaa acgacaacga aaatcattga      5280
     aacttgtagt ttaaagcatt taacttgcca aacagaattg ggtcttttgg tttgggaaaa      5340
     aggtgaagca tcaaagtgcc gcctgaaaaa gggcctttcg acttcttgta ttttaacgga      5400
     caatagactc agctgcccag aagagtatat cgcaatcacc gatcctcatc gcataacgct      5460
     atgtaataaa acctttggct acagtgcaca agggattatt ttcacacaag atgcggggtg      5520
     gcacacatcc ccgaacttca ctgtttcaag cacagcagag gtgcaatcaa tgcttgaaga      5580
     tcagagccga aaaacaaagc gttcagcaat ttgggaagaa tacacatgca cggaggaaga      5640
     aaaagccaag aaatctaaat tctgcctttt taaaaagaac cctggtaata ctttcatgcc      5700
     agccagccaa gtcaatgcca agctgcagta tctttacgac cttatcaaaa gcaatgtaac      5760
     tttcaatata cagcacctgc attcagaaat atgcagaaca aataaaaggc aacttgagat      5820
     gcttcgcatc cttgcacagg gagggtccac tagtttaatg gtccgtgtac tattggatag      5880
     cgataattac agatctcgct tgaacggtga tgtactcagt atatataaat gtaatgaagt      5940
     atatcagtat atgttcgagc ctagggatgg ctgtttttcc gattggcctg tactctacat      6000
     ggaaggaggg gagaagaaaa gaggcttctt ggcacctctg tctcatgaaa tttctcaaaa      6060
     atcgacacct tgtccatgtc cagctccgga cttctacttt gatgcaggag ataaagtcta      6120
     cttgttgaca aacaggtcaa tagtttccaa tctcccagtt ttgccaaagc cttcagagag      6180
     attgaatgtg tcttttcttc ctgatctttc catacaaggt gttggggcat acgacgtaag      6240
     tgagatatcc agccaagaaa caatcattga gttggttagg gacatgcgca ataaatacca      6300
     gattgacggg gtattgaaag ccttcgaaga aaagagaaag tattccactg gtgaactcag      6360
     catattaaaa tccttagaaa gagttactat tgagccagtt aaacggtggg tctcaggact      6420
     ttttggcggt ttaatctcaa caatcctatt agtcctcggg ctttatctcc ttataaaata      6480
     ccatgagaaa gtcctcgctg gtttgggttt tatgtgggac aagatcaagt tactctggtc      6540
     atgtttcctt cgcatcatcc gacgcaatca aagaactgac gctaacaatg atgaaaatgg      6600
     tatggaaatg accaacagga ccgcccaatc ttccagtaca gctcctcctt tagaaaacgg      6660
     tgaccactct gacgaaaata tgtatcctga cctggctaaa acaaagccgt ttttctctaa      6720
     atttaaagtg aaaccttaaa gacgttttag tgatttcaac acgatttgct gttggaaaag      6780
     ggactagtgg agaaaataaa tgtcccatac acagaaaaaa tataaacaat tttccttaac      6840
     aaaagaaaat cggcgagaac agcaatcaaa agtggttttg tgacaaatac gaatagaaca      6900
     atcgacttat aatgatggag ggggtggcgg tcagtgcatc gtgtagtaaa aataagagac      6960
     ggtcattaaa aagaaaacgt gaaaaacgca ctctgattag agttcgactg catccagaag      7020
     tgttattgaa acaaaaagct agaaagaaaa ggagcaaagc gagaaagaag gctgcttcag      7080
     cagaaatgtg tagcagccct tacaagcaaa ggcacatggt acgttcctac aaacgtcaga      7140
     atagggacgt acttcagcag gaacaatacg gcggtatcca atcaacacga actgaaccag      7200
     gtggcaccca gcattcacaa acaagaattc cgtggcgcct tcggaaagta cggctaccag      7260
     tagacatttc tcaagaaaga gaaatcaaac gcttggaacg ggcgcgtgag aaggaaaaag      7320
     cagcgcaaaa ggatctccgg tatgctaagt accaggagct agtgggggta tgtgacatca      7380
     ggggaccccg taacagggag gaagtcaaaa actacaccat cattaatggg tacttgcagc      7440
     acagacactc aacccaaatc tgatgacttc catgtacagt catagtttgt gtcaatttat      7500
     atctgtagga tacttttgac attatcatta ttatttcatt tagtataatc gtaagctcga      7560
     cagtaataac aatcaatata ctttgtcaag tccacacttt ctcctgggta cacaaagact      7620
     agtgataggg ttcagaggga gaattcttcc cttcaaaatt tttcmgatta ttttgstcat      7680
     sagacaaact tttaaattga tttatcggtg ggawtcgggt caagtccaca ctttctcctg      7740
     ggtacacaaa gamtagtgat agggttcaga gggagaattc ttcccttcaa aatttcttag      7800
     attattttgc tcatgagaca aacttttaat ttgatttatc ggtgggaatc gggtccatcc      7860
     atttgacaaa taaacaaaac cgcccagaga tggttakcgt atcctaaatt ttgaacttta      7920
     catgaagttt caattttact acacgtagac acttctgtcg tcatctaata cactagtgat      7980
     agggtacaga gggaaagttt ccttgtaaat ttttttattt ttgctcggga gagcaaaagt      8040
     ctaggtggca tgggtatg                                                    8058
//
ID   Gypsy-40_SiCu-LTR repbase;    DNA;    INV; 765 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-765
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5117-5117 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 765 BP; 262 A; 112 C; 177 G; 214 T; 0 other;
     tgttatgcct gtatttaaat agtttttttt attgatttta ttggtatata tgagtattag        60
     agattaacaa ggctgggaca aaatggccat gggagaatga agttcagcag agataaatat       120
     taggtcaagt ccttagaata gcaagaattt ttgtgagaaa cgttttcagg tcgtgggaag       180
     ggtaaaacag gcaacaggtg ggaaagtctg gagttttgca ccctgagaaa gctggacgtg       240
     agaaacctct tgcgctacgt tatgatattc aatgtatata atgctagtgt gtaagtttag       300
     ctgtaacaag aaaaatgtaa gtcgtattgg gaaagtgagc agtataaaaa gggaccccgt       360
     ccctgtggct ctttctcatt cgatctggac tcctgtacta atgtacacta ctctcgactg       420
     tgaaagagaa gagatcctag ccaatgggtg aggtttttcc acctgagtgg ccgatcattt       480
     cttgaataac gttggggaaa cttgagaaca aataaaaagg atgactagat caaatcaaat       540
     gagcatgaac ttcatttaaa aagggcgatt atttgactta aagcacatac taaagagtag       600
     agaaagttga agtaggaaaa tcgcaaagaa ccccagaaac aaatacattt tcttttaaaa       660
     aggggggaag tcgtagagga tcttatcacg gaggtatcat aaaaatcatt tttatttact       720
     catgcctttc tataaggaag ggataacaaa gaactcggca taaca                       765
//
ID   Gypsy-40_SiOr-I repbase;    DNA;    INV; 4713 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4713
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 374-374 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4713 BP; 1539 A; 789 C; 1023 G; 1360 T; 2 other;
     tcttggcgcc caacggggac agagatgggt atagaacgat caccaaagac aaaagaagca        60
     gggtaccagt tacgcaatcg aacggtgttg tccgatcaac gagggacaac atccagcact       120
     ggagcaatcc ccaaagttag aagcgttgaa aaaaacaact caactagccc agaaagaacg       180
     ctggagatgg acaccgacaa caacagaagg ggatctatcg caagtctgta tgatacatca       240
     gcgagacaag gtaggagaga atttttttca cctattccaa ctcctacgtg tacaactttc       300
     gaaaatatta tcaccaaaag cccaggaggc ttacaacttg ccagtgaggc ctgtaacttt       360
     ttaccgaacc atcaaagagc atctacaagt gatttggttc gggaacaaga aaaatcttca       420
     ttttcaaatg aaccgacaaa aaataaaaat gaacaatttt tttctttaag taaaaataat       480
     aattacgaag agttaattag tttattttca aatgtattac agcgggtaga aaatagaatt       540
     ataagtaata ttactcagat aaatcaaaat aatgtaaact tacctaatac cgagacagtg       600
     tcttttaata gtagaaactt aggtgtttcg gatatataca ataaaattcc tatttttgac       660
     aatcaaataa ttcaaccaat ggaattttta gaacagcttg aatattttta caatacctct       720
     aatatatctt tcgaaagttt taaatatgga attaggaata actttaaaaa cgaaccagca       780
     ttgtggcaac aagcttattt acatacattt aacaattttg aggactttaa acaagctttt       840
     aaagagcatt tttggtctga aacaagacaa ttagaaataa ggttgtcgct acaatcagca       900
     ctgtattgcg agggatcatt tgtaaattat tttatgagac taggtatctc aatcaaaaca       960
     cctagcacct ccctattcgg acagtttatt aattaaaact attgctgggg gtttaccacc      1020
     aaacatttcg gcagttttgg taggtgtaaa tactctaaac gaagcaatgg atcgtcttag      1080
     acaggccgat tattatttcc gaaaagatag cgacaaaaca aaaataaata cattgccaaa      1140
     tacggaaaat ccacggtggc gggcgaattc gtcaaatagt tcgcaaattg caagtcatcg      1200
     ttcgtaccac gtcggcgtcg gccgaaacgg tactggaaca ggcggcgtcg cgcacggcga      1260
     caagcgcagt caacgcgtct cgactgtaaa cattgaccgg agcgtcgata gcgtcgaagg      1320
     cgtcgcggta aatacgaggg gcgatcgagg agaatttacg gagatctcgg gaaacgaagc      1380
     ggacactcac aattgttaag cccggttggg agtgaaaata aaaacagggc tgcagagtgc      1440
     ttaaataaca ctagggaaga cttactggag gaatgtgaat ttgtacacga taaatttaat      1500
     ggcaaaacgc cgatagttga aattaattta tacggattat tttttccagc tttgattgat      1560
     accggtagta tgatttgtgc tattagtgat gaagtttggg gtcagctggg tagtttccat      1620
     aatattattc caacgttttc ttgtaccggt gtaaaagtaa gcggtgcttt tccatctaaa      1680
     gcaaagaaaa taaaatatca aatacagcta acgtttatca tagctaaaga gcagtttaat      1740
     tttgaatttt tagtcatacc gaatttagtg tatcctgtca ttttaggcag tgattggcta      1800
     agggtggtta aagcccaaat aaacatggat aacaacttgt tcttatttaa aacaaatcga      1860
     aattggatag aagtgccgca gatttttcca aaacatgagt taaaagtcaa tgaatccgta      1920
     gaaatatgtg ctatagggtc aaaaagttac taacaataac aagtgataaa ataccggata      1980
     gtttaataga aattgtgctg aatgtaaatt tatcaaataa cgatcggaat aggtttcgag      2040
     atctgctttg taaacataaa gatatttttt cggagcgccc tggtagaaca atggaatatc      2100
     aacatcaaat tcgattaaat gataaaaaag aattttgtct aaaacaatat cccatcgcgt      2160
     tagctcatag aaaaactatt caggaccagt taaacactat ggaagagtgg agaattatta      2220
     agaaaatggc aacgccttat gtatcgccgt taatggcgac tttgaaaaaa gataattcag      2280
     ttcggttgtt tttagattct cgtcatttga atagcgtcat ggaaaaagag catgacacac      2340
     cgcgacccgt ggaggatact ttaaaatcgc tacgaaatat tgttatcatg tcattattag      2400
     attttacttg tggctactat caaataccat tgacagagga gtcgatgaaa tatacgggtt      2460
     tcagatttga tggtacaact tactgttttt gtgttttacc gttcgggtta tcgtcgagtg      2520
     ttagtgcgtt tacgaggtgt ctttcaaaag tttttaattc agaatttgat agttttttga      2580
     ctaggtttgt cgatgatctt ttagtagttt catttagcat agaggaacat ttaatacatt      2640
     tagataaaat attcacacga ctaagtctgg ccggacttac tttaaaactt aagaaatgtt      2700
     cgtttttcag acaagaaatg acatttttgg gttacatatt aacgtcagaa ggttatcggc      2760
     cagatccacg acgaatacaa gcgttaaatg attttaaggt gcctacaaat aaaaaagaga      2820
     tacaaagttt tttaggtctg gcaaattttg atagagcttt ttgcgaacaa ttttcgagta      2880
     tggccgctcc actatcagcg ttgctaaaaa acaaggtaaa atggaaatgg agcgaagttc      2940
     aacaaagagc tttcgagaat attaaaagta aaatcagtgg agcaacactt ttgtatcatc      3000
     ctcgtgaaga cgtaccgttt tgtttgtata ttgatgcttg tgatacggga ttgggtgcgc      3060
     aattatttca gatagtggat ggtaaacacc acgctattgc ttgggcatcg cggttattgc      3120
     ttgaccgaga aaccaggtat catataaatg agaaggaggc gttgtgttta gtttgggcaa      3180
     cgactagatt taaaagttat ttgctcggtc gaaaatttgt tgtttatacg gataatgcta      3240
     cgattaccta tttgagaacc tgtcggttat tgtcgcctag gattgctcga tacgcgttgg      3300
     ttcttcaaga gtttgagttt gatctggtgc acattcccgg tcgacaaaac atagttgcag      3360
     atgcattgtc tcggttatcc gccattagac cacctacgcc agaagataag cattttagga      3420
     tactggctgt aaacagattt tccacggaat tccatgatat tttaagaaat attgaacgtt      3480
     ttcagaggga ggataagaaa ctttgcgata taatggaaaa attgccgcaa aatcaggagc      3540
     tacaaaagaa atttgttgaa agaaacggaa ttttgtatat acgccaacag aacgacgaat      3600
     tttatatttt atgtgtgcct aaagagttgg ttgagaagtt tgccatggag tatcaccatg      3660
     cgctgggaca ttttggcgcg tataaaattt ggcgcgcttt gcgtaatgac gtgtggtgga      3720
     caaatatgta taaagtggtt aagcgagtaa taaagtcgtg cgaattatgt cagaagacta      3780
     aagcgagcaa actaccaatt ccgagtttac agtccgtgkt ttcgacggaa aaaaatgatc      3840
     tgattgccgt ggattttttc gggccactac cgcccagtag gggaggcgtg agatatattt      3900
     tggtggtgct ggacatattt actaaatacg taacctttta tgccatgaaa cgcgccacca      3960
     cgacagtagc tttgaatcga ataacaaaaa tttatttgga aaagatggga aatgtgaaaa      4020
     ggattctcag cgatcaagga actcaatttc tgtctgcccg atggaaaagt accttagaaa      4080
     gcttgggtat cgaggtagtc tatacgtcag tgcgacatcc gcaagcaaat ccgtcggaac      4140
     gggttatgcg tgagctaggt cgtttatgcc gtgckttctg tcaagatcag catactagat      4200
     gggcgtacga gcttccaaaa tttgctgatt ttatgaatac tgtggttcat gattcaacgg      4260
     gttacgctcc taaggagttg cagtttggaa cagagaggga aaggttattg cctgattctt      4320
     tacagggccc accttccgga cccgctgcta cctatgaaca gaagttgatt ttggcccggg      4380
     aaactttctt gacaaaggct gctcgccgaa gagcacaaca gaccaatttc cgagatgtta      4440
     agtttaagac agaagattta gttttgctta gggccaataa tgtttcatca gctattaaag      4500
     ctgaaactaa aaagtttttg tttttgtttg aagggccgta taggattaaa aaatcggtta      4560
     gtacggatac ttatatctta gtgaatgata aaacgggtaa ggaacggggt atgttccatg      4620
     catcgcattt aaaattatac aatcaaccag tgttgaataa gcccgatcta aaggtttaga      4680
     ctttagaccg tccttgttta ggaggggtgc tgg                                   4713
//
ID   Gypsy-40_SiOr-LTR repbase;    DNA;    INV; 412 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-412
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 408-408 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 412 BP; 123 A; 66 C; 81 G; 142 T; 0 other;
     tgtaacggga attatttggt attattgttg ttattatttt atttactatt gttaaatacg        60
     gtgaatgcgc tgggcaagtg cgagggaacc attaaggttg ataccccgca aaaaatgtgg       120
     tattctatta aaagataggt aggtttttac tgccgtatga atattcgcag tttgatggcc       180
     gatcaaatag ccacgagggt gttagtgaat aatataataa atatattagt aagctgtatc       240
     ccggtattag gtgagatttt ctgtttgcta atcgcaaatt acctgttacc ataattaagg       300
     gattttttgt atttagatcg agcctgaagc actagactga ataaagctga gtctgatcgt       360
     ctacacatta ttttccatct ctaattaaac ccccacaatc cttcccatta ca               412
//
ID   Gypsy-40_SpEx-I repbase;    DNA;    INV; 5983 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5983
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4069-4069 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..4928
FT                 /product="Gypsy-40_SpEx-I_1p"
FT                 /translation="MDRDHGVSRRSRSHLRTPIMSEKRKRRYDDGASKNYL
FT                 SEKKRRRQQRSTPSGSSDQGRTSRSRTRTDRRRRRNRKRSCEAERRSRRSL
FT                 TMEWSESEQDERNRSRTRAGGRHRRTRNRSCEAERRSRRSPIKKRSEQRRT
FT                 STRRRLSNRSSSSNTVVSNASRENTQVSKSMFANSETQLFLNELLKSLSAA
FT                 KPEGNKFPMLGNVIPEFDPMIKGQTVHMWLNKVDECAKLYRWGDDQIIHYA
FT                 LPRLAGVARTWYQALPSMSFSWPEWKSKLIDSFPSSDDYAELLTEMLNKRV
FT                 KYNESLELYYYEKLNLLNRCEIFGKRAVDCLLYGIEDRSLRLGAKAAKCQE
FT                 PEEVLNYFQSIKQSRDFDKSKIGQDKKTYHMSSMNSNFNTKQSVGNDSKTS
FT                 KPSSSTSITCFNCKEVGHFSVKCPQKLRRCNICKRIGHVTIDCPQLSNEKS
FT                 KDVSTEKKVMKVDVEDTSNEKYMISLKINDVLVRGYVDLGSQCTLIQYSVA
FT                 KSLGVTWSVGKLPVMRGLGNNIVVPLGKACVKMSISNIVETVDVYIVEDGM
FT                 IKYPVLVGHSFTEKPGIIITKTSDSLIFSKEGINKLRLLLKTDVEIQPKQM
FT                 TVVPVYSDRSCSGSIYVRGSLRGQPGKEFYLLPGEYFLENSLGAVLIQNFS
FT                 DHSLLLSKDTLVSRVFSFEKGFEINILDFTKDDSSSDLNYGSHLSDDELLR
FT                 LKSLLKKYEGCFSSCLADLGYTNILQMKIELNDANPVVYRPYRLSYPEREL
FT                 VRTMVKEMIDADIVCESNSPYASPIILVKKKTGEKRLCVDYRALNNKTRKE
FT                 HYPLPLIDDQLDRLSGNSLFISLDLASGYYQIPIAEDSQEATAFVTPDGQY
FT                 QYKRMPFGLANAPSIFQRVMNKVFSDLKYVVIYMDDILIPASSFNDGLERL
FT                 EEVLQRLANAGLTLKLKKCHFFQREIDFLGFCVSGDGIRPGSRKTDAISNF
FT                 PVPKNVHEVRRFIGLASFFRRFVKNFAIIACPLTNLLKSKFEWKWTAECTS
FT                 AFNTLKEKLAERPIIALFDARLETELHTDASKIGIAGILMQRGSDGHLRTV
FT                 AYYSRKNSEEEQKLHSFDLETLAVVASLSRFRVYLLGLQFRIVTDCNALRT
FT                 TLTKRDLIPRIARWWVQLQEYDCTIEYRAGARMAHVDALSRAPVTEHTDDT
FT                 DTHVIDVLQTEATDWIATVQSNDEEIKRIREILLDDKTKYVADVRNNYQLK
FT                 NGYVYRILDEGLRWVVPRGVRWQVLRMNHDHVGHFGFDKTLSRLKATFWFP
FT                 KMRRFTKKYVSSCLQCAHHKVPSGQKEGLLHPIPKIEIPFHTLHADHLGPF
FT                 IRSRRGNMYILVIVDAFTKFVNIRAVKDTKTSTAIKVFHEYFSYFGAPSRL
FT                 ITDRGSCFTSRKFKEFTDKLNIKHIMNAVATPRANGQVERFNRTISDALST
FT                 KCHGSNENTWDEYVGDIQLGMNTTVSKATGKSPSELLFGLKLVSPSENILG
FT                 DAISETTQLVSSDHLMQLRSDVKKKIDKDQEKAKARFDKNRKKPKSYSVGD
FT                 LVRIERTVVNKEHQGKSKKLIPKLQGPYRIVKILPNDRFVVEDTPLTRKGN
FT                 KRYENIIAIDKIHPWLNFNDYSSDDDNEMDSNENDKEE"
XX
SQ   Sequence 5983 BP; 1954 A; 1019 C; 1326 G; 1684 T; 0 other;
     actcagaagt gggataatta caaaacgccc acgagtattg aaaatataag gaaataaata        60
     cgccaaagaa ttttaaaata caatcaccca caagttttga aaaaaatctt gaaatggacc       120
     gtgaccacgg tgtatcacga agaagtcggt ctcatttacg tacacctatt atgagtgaga       180
     aacgcaagcg tcgctacgat gatggagcaa gtaaaaacta cttgagcgag aagaagcgtc       240
     gtaggcagca aagaagtacg cctagcggtt caagtgacca ggggaggacg agtcgatctc       300
     gaacacggac tgatagacgg cgtcggcgaa accggaaacg tagctgtgaa gctgagcgtc       360
     gttcgcgccg aagcctaacg atggagtgga gtgagagtga acaggacgag aggaatagat       420
     cccgaacacg agctggtggt cgtcatcggc gaactcggaa tcgtagctgc gaggctgagc       480
     gtcgttcacg ccgaagtccg ataaagaaac ggagcgagca gaggcgtacc agtacccgga       540
     ggcgactatc caaccgaagc agttcatcga acaccgtagt aagtaatgca tcacgcgaaa       600
     atacccaggt aagcaaatct atgtttgcta acagcgagac tcagttattt ttgaacgagt       660
     tgttaaaatc tttgtcagcc gcgaaaccag aagggaataa atttccaatg ctaggtaatg       720
     tcattcctga gttcgacccc atgatcaaag gccagacggt ccacatgtgg ctcaacaagg       780
     tcgacgaatg tgcgaagcta taccgttggg gtgatgacca gattattcac tacgcgctgc       840
     ccagacttgc gggggtggct cgtacgtggt accaagcatt gccttcaatg tcattttcgt       900
     ggcctgagtg gaaaagtaaa ttaattgatt cctttcctag tagtgatgat tacgcagaac       960
     ttcttactga aatgttgaat aaacgtgtga aatacaatga atcgctagaa ttatattatt      1020
     atgaaaaatt aaacctactg aatcgatgcg agattttcgg aaaacgtgcc gttgattgcc      1080
     tgctctatgg cattgaggat cgttccttac gacttggtgc taaagcagcg aaatgccaag      1140
     aacctgaaga ggttcttaat tactttcaat ctattaaaca aagccgcgat tttgataagt      1200
     ctaaaatcgg ccaagataaa aagacctatc atatgtcatc gatgaattca aactttaaca      1260
     ctaaacaatc agtaggaaat gactctaaga cctctaaacc atcatctagt acgtcaataa      1320
     catgttttaa ctgcaaagaa gtaggtcatt ttagtgttaa gtgtccacaa aagttgcgga      1380
     gatgtaacat ttgtaagagg attggccatg taacgattga ttgcccgcaa ctatctaatg      1440
     aaaagagtaa agatgttagt acagaaaaga aggttatgaa agtcgatgtt gaagatacta      1500
     gtaatgagaa atatatgatt tcattaaaga ttaacgatgt tttggttaga ggatacgtag      1560
     atttaggcag tcagtgcaca ttgatacaat atagtgtagc aaaatcatta ggagttactt      1620
     ggtcagtagg caagttacca gttatgagag gattaggtaa taatatagtt gttccactgg      1680
     gaaaggcatg tgtgaaaatg agcattagta atatcgtaga gacggtcgac gtttacatag      1740
     ttgaagatgg tatgattaaa taccctgtgt tagttggtca cagctttaca gaaaaacccg      1800
     gtatcattat cacgaaaacc tcagattctt taatctttag caaggaaggg attaacaaat      1860
     tgcggctact tcttaaaacg gatgttgaaa ttcaaccaaa acaaatgact gtggttcctg      1920
     tctattccga cagaagctgc tctgggtcta tttatgtcag gggttcatta aggggtcagc      1980
     ctggtaaaga attttactta ttaccaggtg aatattttct tgaaaatagt ttaggagcag      2040
     ttctaatcca aaattttagc gaccattcac ttttgctaag taaagacaca ttagttagtc      2100
     gagttttcag tttcgaaaaa ggttttgaaa taaacatact ggattttacc aaagatgact      2160
     cgagctccga tcttaattat ggtagtcact tatccgatga tgagttattg agattgaagt      2220
     ctctattaaa aaagtatgag ggctgttttt cctcttgttt agctgattta gggtatacta      2280
     acatactaca gatgaaaata gaactgaacg atgcgaatcc agtcgtttac cgtccttata      2340
     ggctttcata tccggaacgt gaattggttc gcacaatggt aaaggagatg atcgatgccg      2400
     atattgtttg tgagtctaac tcaccctatg cgagtcctat tattcttgtg aagaagaaaa      2460
     cgggtgagaa aaggctttgc gtcgattaca gagcgctgaa taacaagact cgtaaagaac      2520
     attacccttt accactgatt gacgaccaac tggatagatt gtcgggaaat tctctcttca      2580
     tcagtcttga tcttgcatct gggtactacc aaatccctat agcagaggat tcacaagagg      2640
     caactgcctt tgtcacacct gacggtcagt accagtataa aagaatgcct ttcgggttag      2700
     ctaatgcccc atcaattttt caaagagtga tgaacaaagt tttttctgat ttaaaatacg      2760
     ttgtcatcta catggatgat atcctgattc ctgctagttc atttaatgat ggcttggaac      2820
     gcttagaaga agttctacag cgcttagcta atgcaggtct aactcttaaa ttaaagaagt      2880
     gccatttctt tcaaagggag atagattttc taggattttg tgtatccgga gatggcatac      2940
     gacccggatc tcgtaaaact gatgcaattt ctaattttcc tgtacccaaa aacgtacatg      3000
     aggtgagacg ttttatagga cttgcaagtt tctttcgtag attcgtcaaa aatttcgcaa      3060
     taatagcatg tccattaacg aatcttttaa aatctaagtt tgagtggaaa tggaccgcgg      3120
     aatgtacatc tgcttttaac actctcaagg agaaactcgc agaacgacct ataatagcct      3180
     tgttcgatgc gcgattagag actgaattgc atactgatgc atccaagata ggtatcgcag      3240
     gtatccttat gcagcgtggt agtgacggcc acttgaggac tgtagcctac tatagtcgga      3300
     aaaattcaga agaggaacaa aaacttcact ctttcgatct cgagacgttg gctgtcgttg      3360
     cttccttaag tcgtttccgt gtgtatttat tggggcttca attcagaata gtaaccgact      3420
     gtaatgcgtt aagaacgact ttgacaaagc gtgatctcat acctaggatt gcgcgatggt      3480
     gggttcagct gcaggagtac gactgtacta tcgaatatag ggcaggcgcg cgtatggctc      3540
     atgtagatgc tttgagtcgt gcaccggtaa ctgaacacac tgacgatact gatacacacg      3600
     taatcgacgt attgcaaaca gaggcaaccg attggattgc aactgtacag agtaacgacg      3660
     aagagataaa gcgaatccgg gaaattcttc tcgatgataa gacgaaatac gttgccgacg      3720
     tacgaaataa ttatcaattg aagaatggtt atgtataccg tatcttagat gagggacttc      3780
     gttgggtagt accaaggggt gttagatggc aagtactgcg catgaaccac gaccatgtag      3840
     ggcattttgg ttttgacaag acgctgagta ggttaaaagc aacattttgg ttcccaaaaa      3900
     tgcgtcgttt tacaaagaaa tatgtatcat cttgcttaca atgtgcacac cataaggtac      3960
     catcaggcca aaaggaaggt ttattacacc ctattccaaa gattgaaatt ccgttccata      4020
     cattgcatgc ggatcatctc ggcccgttta ttcgttctag aaggggaaac atgtatattt      4080
     tagtaattgt agatgcattt acaaaatttg ttaatatacg tgcagtaaaa gatacgaaaa      4140
     cttcaactgc aattaaagta tttcatgaat attttagtta ctttggtgca ccgtctagac      4200
     taataacaga ccgaggttca tgttttacta gtaggaagtt caaggagttc acagacaaat      4260
     taaacataaa acatataatg aatgcggtag ctacacctag agcgaatgga caggtcgaga      4320
     ggttcaaccg aaccatatcc gacgcattaa gtacgaaatg ccatggtagc aatgaaaata      4380
     catgggatga gtatgtagga gatattcagt taggtatgaa taccactgtc agtaaagcga      4440
     ctggcaagag tccctcagaa ttattattcg gattgaaatt agtttcgcct tcagagaata      4500
     tactgggaga tgcgatttct gaaacgactc agttagttag tagtgaccac ctaatgcaac      4560
     ttaggtccga tgttaaaaaa aaaattgata aagatcagga aaaagcgaaa gctaggtttg      4620
     acaagaatag aaagaaaccg aaatcataca gtgtaggaga tctagttaga attgaaagga      4680
     cagtcgttaa taaagagcat cagggtaaat ctaaaaagct aataccaaaa cttcaaggcc      4740
     cgtaccgaat tgtaaaaatt ttaccgaacg acaggttcgt agtcgaggac acgccactaa      4800
     ctaggaaagg aaacaaacga tacgaaaata taatagcaat cgataagatt catccttggc      4860
     taaattttaa tgattattct agtgatgatg ataacgagat ggatagtaat gaaaatgaca      4920
     aagaggaatg aattaatggc attgaaaaaa aaaactaaca atgtgttttt ttatagtact      4980
     ttaacttgtt actttagtat ttaggtacta ttttaagaaa tgtttcataa tctacctatg      5040
     aattattgaa atgattatca gtgcttcgca taattgcatg gtataattaa tttaactgtc      5100
     aatatgaaat gtattgcgat tgagactaga tgattaacac taataaagaa tggcactgtg      5160
     ttataggtcc gtatggatta tgattattat ataaattagt gattgtgagc accggctatc      5220
     agcgatcagt acagaaacga atggtatcaa attattggta tcgtacagat gattgttgac      5280
     catagcagat cgtgcaagat gtctgtttat gatagattta ttgtgagcac cggctatcaa      5340
     cgatcagtac agaaacgaat ggtatcaaat tattggtatc gtacagatga ttgttgacca      5400
     tagcagatcg tgcaagatgt cagtttatga tagatttatt gtgagcaccg gctatcaacg      5460
     atcagtacag aaacgaatgg tatcaaatta ttggtatcgt acagatgatt gttgaccata      5520
     gcagatcgtg caagatgtca gtttatgata gatttattgt gagcaccggc tatcaacgat      5580
     cagtacagaa acgaatggta tcaaattatt ggtatcgtac agatgattgt tgaccatagc      5640
     agatcgtgca agatgtcagt ttatgataga tttattgtga gcaccggcta tcaacgatca      5700
     gtacagaaac gaatggtatc aaattattgg tatcgtacag atgattgttg accatagcag      5760
     atcgtgcaag atgagagtgt atttagtttt gttgttagca tagactatga gcaatcggtt      5820
     cagaaacgaa tgctatttag tacaaatgtc acacacatgt gactaaataa taaggagatt      5880
     tattattgta taattgctat aatttattgg ttatatttat tattaattgg ttatgcttat      5940
     tgaattgaag tgagaggact cacttgttga aggatggccg aac                        5983
//
ID   Gypsy-40_SpEx-LTR repbase;    DNA;    INV; 348 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-348
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4169-4169 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 348 BP; 116 A; 44 C; 59 G; 129 T; 0 other;
     tgtaaaacta atagttttat tgtaaactta ttgtcaacat tgttatttgt aaagtgacag        60
     gtttatacta tagtactctg tggtgacaag tctctgttac tgtcatagac aagtaaacac       120
     ttctgtattt tagtatgtaa aagtgatacc caccactaaa gtaatagtcg actaatttaa       180
     tagttatggt tagatgtcga cattaacggg gaccactctg atttttggcg ggaattcgaa       240
     ctgtgttgaa ctcaacaata agatatataa tttggaataa ttataattat aacgtagaat       300
     attcaagtat tcattgtttt atttctgagt taagatctag ttattaca                    348
//
ID   Gypsy-40_TrNi-I repbase;    DNA;    INV; 5112 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5112
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 242-242 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4565
FT                 /product="Gypsy-40_TrNi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MSDRECRERELRSSREHRRRSRYRDRTPVNSGLKREM
FT                 SAMLARLRALEGQVAARDTPPPVQRSEPVSPSHRRRESNRRVTSPAPERPV
FT                 SPAHCAGSSTTPLLPSRPPSTPHTYQAKCAGSEHVVSEENAPSSVTDRIVD
FT                 AIRSIHTVVRPSQHYYISNFDPNLHNIDDWCEEVDRAKLLNNWSDYECLSR
FT                 IGNCLKGDAKTWLSEWVTSERSWSNFKKEFKPLCPKTPNIANILFXVMNTN
FT                 SDNYATYADYARRSLLRLRIVRGLSDELMSAIVIRGITDPQIKASATNAKL
FT                 LPNDLXEFFSTYVKPNTSKNSIARGASSQNYAGKNKNISSNLPSRKRRFDE
FT                 GRCFVCGQLGHKQAQCNKRSKVYSEEGSSTTNTNNAVPKPVFVPTKSDTCT
FT                 FCKKSGHKVENCFAKQKSDSRNKNNVNFCRENQTTRNNDVIVAVIQGVAID
FT                 VLIDSGSTISLISSSLLKHFECARKPSFRILKGLGSQEIESTYYVTLPIEF
FT                 DGITLEVDMFVVASEYMNTPVIVGTDVLNREGVRYIRTRDSQLLQREITKS
FT                 DQVMTVQSDVSIPVNTPLVGDELKQLLSVINDFSHFFISGTATSTVNTGNM
FT                 VIRLKSDTPINYRPYRLSHAETLRVREIIRDLLDKGVIRESESDFASPILL
FT                 VKKKDGSDRMCVDYRKLNDITVKDRFPLPRIDDHIDRLGRNKYFTSLDMAT
FT                 GFHQIPVQEXSVPLTGFVTPEGHYEYLKMPYGLANAPVVYQRIITKTLREH
FT                 IESGEILVYIDDVLILSRTIEQGLVLLRRVLTTLTDAGFSINLKKCFFLSP
FT                 SIEYLGRNISEGQVRPSAEKVRALTNTDEPKNVKQVRQFLGLAGYFRRYIP
FT                 DFAQRTACIAALTRKGVEFKWGPEQQAARKEIIECLTSEPVLAVYDPSLPI
FT                 EVHTDASSVGYGAVLLQVHEGGHKRVVAYYSKLTQGAESKYHSYELETLAV
FT                 VKALQHFRHYLVGVRFTVVTDCNALKLTQRKKDLLPRVARWWVYLQDFDFN
FT                 LDYRKGSLMSHADYLSRNPVNVCTVQKPLSWARIAQASDEETRTLIQRLND
FT                 GQLDASRYVVKNDTLYVKYAPTGESTRLLCYIPKGHRLSLLRVFHDEHEHP
FT                 GAEKTFDLITKHFWFPGLRSFVQKYVAHCLVCISHKKVARAPLQPIHSWEK
FT                 PEVPFETVHMDALGPLPEADGYRYVLIVIDAFSKFALLYPMYRQDSNELKR
FT                 NVTNVFSLFGAPKLIVADRGRMFQSTEFLDWVRDMGCEVHLITPEMHQSNG
FT                 QAERYCRTVLNMIRIEANHRQQKWPSVIWKIQLVLNITRHRTTQYSALNLL
FT                 VGIEAATPLIRSLVRDVALEGSSPNREALREMGRQRASGRLKQNQQSQDNY
FT                 VNQGRKAPRGFEINSLVFVKKQAQSTGKLDSGMRGPYRVTKILPHGRYELQ
FT                 LLAGSYGKSTQAAAEFMIPWRGEWTPEVCAAYFDGELLGYSKAGCKLSLGM
FT                 LSEIANVVLPFCVYDCRERANVALLS"
XX
SQ   Sequence 5112 BP; 1370 A; 1127 C; 1253 G; 1350 T; 12 other;
     tcagaagtgg gataggatca acgtggttct atcctgctgg ccattctggt tttgtgtttt        60
     ctggtgcgag agagtaaagg gacaaaaaaa aaatgtctga ccgcgaatgt cgcgaacgcg       120
     agcttcgtag tagccgagag cataggcgtc gtagtagata tcgcgatcgc accccagtga       180
     atagtggttt aaaacgtgag atgagtgcga tgttagctag gcttagagcg ttagaaggtc       240
     aagtagctgc gcgagacacg ccgccgccgg tgcaacgtag cgagcctgtt tcaccgtctc       300
     ataggcgccg ggaatcgaat agacgcgtga cgtcacccgc gcctgagagg cctgtgtcac       360
     cagcgcactg tgcgggaagt tccacgacgc cgctgctccc gtcgcggcca ccaagtactc       420
     cacatacgta tcaagcgaag tgtgccggat cggaacatgt tgtcagcgaa gaaaacgccc       480
     catcatcggt aacggatcga atcgtggatg ctattcgttc aattcatacg gtggtaagac       540
     caagccaaca ttattacatt tcaaatttcg accctaattt gcataacatt gacgattggt       600
     gtgaggaggt agatcgcgct aaattgttaa ataattggag tgattatgaa tgcctttcac       660
     gtattggtaa ctgcttaaaa ggagacgcca aaacgtggct tagcgaatgg gtgactagcg       720
     agcgtagttg gagtaatttc aagaaagaat ttaagccctt atgtccaaaa acgcctaata       780
     ttgccaatat tctgtttgma gtaatgaata ccaactcaga caactatgct acatatgctg       840
     attacgctcg tcgttcactt cttcgcttac gcatcgtacg ggggctcagt gacgaactaa       900
     tgtcagcaat tgttatacgt ggaataactg acccccagat taaagcgtcc gctacaaatg       960
     ctaagctgtt acctaacgat ctcktagagt tcttttcaac atatgtaaaa cctaacacat      1020
     ctaaaaacag cattgctcgt ggcgcatcat ctcaaaatta tgccggtaaa aataaaaaca      1080
     tttcgtctaa tttaccctcg agaaaacgac gttttgacga aggcaggtgt tttgtgtgcg      1140
     gtcaattggg acataaacag gctcagtgta ataaacgatc taaagtttat tcggaggaag      1200
     gttcttccac gactaataca aacaatgctg tgcctaagcc tgtttttgtg ccaactaaat      1260
     ctgatacgtg tacattttgt aaaaaatcgg gtcataaagt cgagaattgc tttgcaaaac      1320
     agaaatccga ttcacgcaat aaaaacaatg ttaacttttg ccgcgaaaat caaactaccc      1380
     gcaataatga cgttattgtg gccgttatcc agggcgtagc tattgatgtt ttgatcgata      1440
     gtggctcaac aatttcgctt atttcctcaa gtctgttaaa acattttgag tgtgcgcgta      1500
     agccatcgtt tcgtatacta aagggacttg gaagtcagga gattgaaagt acttattacg      1560
     taactttgcc aatcgaattt gacggcataa ctcttgaagt tgatatgttc gtagttgctt      1620
     ctgaatacat gaatacaccg gtcatagtgg gtacagatgt cctcaataga gagggcgtcc      1680
     gttacattcg tacacgagat tctcaactac ttcagagaga aattacgaaa tcggaccaag      1740
     tgatgactgt tcagtctgat gtatcaatcc ctgtcaacac gcctcttgtt ggggatgagc      1800
     tcaaacagtt gttgtcagtt attaacgact tttcgcattt ttttatatcg ggtaccgcca      1860
     catctacggt caatacaggg aatatggtca tcagactgaa gagtgacact cctattaatt      1920
     atcgaccgta tcgtctttcc catgctgaga ctcttcgcgt ccgtgagatt attagggact      1980
     tgttagacaa gggggtcatc cgggaatcgg aatcggattt cgctagtccg atcctactcg      2040
     tcaaaaagaa agacggatct gaccgcatgt gcgtcgatta ccggaagctt aatgacataa      2100
     ctgttaagga tcgttttccg ttgccgcgaa tcgatgacca catagatcgt ctagggcgaa      2160
     acaaatattt tacgagttta gatatggcca cggggtttca ccagatccct gtccaagagg      2220
     astccgtccc tcttacggga tttgtaacgc ccgaggggca ctatgaatat ctaaaaatgc      2280
     catatggtct tgcaaatgcg ccagttgtat atcagcggat cataacgaaa acacttcgtg      2340
     aacacataga atctggtgaa atcctggtct atatcgatga cgtcctgata ctgagcagga      2400
     ccatagagca gggactagtt cttctgcgta gggtacttac tacattgact gacgcgggct      2460
     tttcaatcaa tttaaagaaa tgcttttttc tttcaccctc aattgagtat ctaggtcgta      2520
     atattagtga gggtcaggta cggccgagcg cagagaaagt tagggcgtta acgaatacag      2580
     atgaacctaa gaatgtcaag caggtccgtc agtttttggg tctagctggc tattttcggc      2640
     gttatatacc tgactttgcg caaagaacag cgtgtatagc ggctttaact cgtaagggtg      2700
     tagaatttaa atggggtcca gagcagcaag cagctcgcaa agaaattatc gaatgcttga      2760
     ccagtgagcc cgtacttgcg gtgtacgatc cttcattgcc gattgaggtg cacacagacg      2820
     caagctctgt cggatacggg gctgtgcttc tgcaagtgca cgagggtggt cataagcgag      2880
     tggtcgctta ctatagtaag ctaacacagg gagctgaaag taagtaccac tcgtacgaac      2940
     ttgagaccct tgcggtagtc aaagccttac aacatttcag gcactacctt gtgggtgtgc      3000
     gcttcactgt agtcaccgac tgcaatgcgt tgaaacttac gcagcgcaaa aaggatttgc      3060
     ttcctagggt ggctcggtgg tgggtatacc tgcaggattt tgatttcaac ttggactatc      3120
     gaaagggctc acttatgtca cacgctgact accttagtcg gaatccggtc aatgtgtgca      3180
     cagttcaaaa gccgctgagt tgggcgcgga ttgctcaggc ttctgatgag gagacccgaa      3240
     cccttattca gcgactgaat gacggtcagt tagacgcaag tcgatacgtc gttaaaaacg      3300
     acaccctcta cgttaagtat gcacctactg gtgaatctac tcgactcctg tgttatatac      3360
     ctaaggggca caggcttagc ctacttcgcg tgtttcatga tgagcacgaa catcctggag      3420
     cagaaaagac atttgattta ataacgaaac atttttggtt ccctggtttg agaagttttg      3480
     tccaaaaata tgtagcacac tgtttagtct gtatctcaca taaaaaagtc gctcgagctc      3540
     cattacagcc tattcattct tgggaaaaac cagaagtgcc ctttgaaacg gtccatatgg      3600
     atgccctggg accactcccc gaggcggatg gctatcgata cgtccttata gttattgacg      3660
     cattctctaa gttcgcgtta ctttacccga tgtatcggca agattccaat gaattgaagc      3720
     gcaatgttac taatgttttt tcgctcttcg gagcccctaa gttaattgtt gccgacagag      3780
     gtcgtatgtt ccaaagcacc gaatttctcg actgggttag ggatatgggt tgtgaagttc      3840
     atttaattac acccgagatg caccaatcca acggccaagc cgaacgttat tgcaggactg      3900
     tgttaaatat gattcgtatt gaagcaaatc atcggcagca gaaatggcct tctgttatct      3960
     ggaaaattca actcgtgctg aacatcactc ggcacagaac gacgcaatac tctgccctga      4020
     acctgcttgt tggtatagaa gcggcgacgc ctctcatccg aagtttggtg cgcgatgtgg      4080
     cgttggaagg ttccagtcca aacagggagg ctttacgtga aatgggccga cagagagcat      4140
     cgggacggct caagcaaaat cagcaaagcc aggataatta cgttaatcaa ggcagaaagg      4200
     cgcctcgtgg ctttgaaata aattccttag tttttgtcaa aaagcaggca cagtccacgg      4260
     ggaagctaga ctccggtatg cgcggcccgt accgtgtgac aaagattctt ccgcatgggc      4320
     gctatgagct gcaactcctt gctggctcct acgggaagtc gacgcaagca gcagcggagt      4380
     ttatgatccc gtggcgtgga gagtggacac ctgaagtatg tgctgcttac tttgatggtg      4440
     agttgcttgg ctactccaag gcaggttgca aactgtcctt gggtatgttg tcagaaatag      4500
     ctaacgtagt gcttcctttc tgtgtatacg attgtcggga gagagctaac gtcgcgcttc      4560
     tttcctaacg attgtggggc gaacatgcaa acgtcgggcc tctgtctcgc cgggctaagc      4620
     tatgctaacg tcgtgcctat gccttacacc atgattaagt tatgctaacg tagcgcctat      4680
     ggcttaaaca ttgcttgtga tgcttcgcat cttgtcgata tgatggacgc atcatattta      4740
     tgagatgtta agtttcgcaw tttmaattgc tgttaatgtg tgtacgtaas ctaatagatg      4800
     ttgtttccgt gcatagktgc agacacggag gatgaagatc ctggtgccac tcaaccagat      4860
     gaagcagttg attttggtcg cksgttaccg ccacckgctc taactgcacg gcggcctgtg      4920
     gatgatgggc aacamccatc cacgtccagg attcagaggc atacaagtgc ttcagccact      4980
     cctgccgctg agatgtacca agagcaggag cctgccgcag agtctgtgca akggctttcc      5040
     atgcccctgc tggactaacc aaacaaaagg agaaaaagga gcccgaggac ggtctcctgt      5100
     caggagaggc cg                                                          5112
//
ID   Gypsy-40_TrNi-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-211
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 196-196 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs or inserted in (TA)n
CC   microsatellites.
XX
SQ   Sequence 211 BP; 53 A; 43 C; 40 G; 75 T; 0 other;
     tgtaggagat tcagaactac ccgctgaatg ttactatata agccagcgcg taccgctgct        60
     cggattcact agtctgtcgg ccgtcatcgc gatcggagct ctcagtgttt tcatttttca       120
     tttttaaagt ttttgttaag atttaaataa aaccgttagg acttgttttt tgtcttttta       180
     aaaaaaatac tcgccttcgg aattccctag a                                      211
//
ID   Gypsy-40_TrVa-I repbase;    DNA;    INV; 9482 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9482
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 285-285 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1315
FT                 /product="Gypsy-40_TrVa-I_1p"
FT                 /translation="MSSPDGXISGASETNNDDKELISLMLSRLPYFSDKPN
FT                 QNIGYFLNEFEEIKQLAKWSEQKAFYFCRTKLGGEVLNYVKNQPEVTEHTY
FT                 ESLKKLLVSRYEKVADLGYERIXFYTRAQEPGETVREFASKLRELGYACKE
FT                 KGMNGAEEEILQRHLQEQLKTNFLKGLNDSIRRFVIVRRPATFEDAIKEAM
FT                 FEEEQIKEIXCDYCQKKGHLEKDCRNKARSQSRHTSSQNFNSRNNNYGPQN
FT                 ERREYNRSQNQNQNYNSXNGYYSQKFNQGNNQNYRYSNNQSSQDIRQQNND
FT                 RNVNLVSKNKDF"
FT   CDS           1309..6990
FT                 /product="Gypsy-40_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GFLNAPTRNGGGKKGDNAISIPLRKNDLGYVVNIRVK
FT                 NVKXIPAFLIDTGSVISIIQSNVLAGLIKFVNRNRRSYLTNISESNVLTLG
FT                 TIMLTLLHDGKRFQQEFHVVGSRNLDPVGGIIGMDFIEKYSANLMFTENSM
FT                 TVARSDTYANVLRWAPSNPIFAEPDRSVTRKPDKIQEKSKYTHRKMKHGER
FT                 LFKNSRKINSNHNAVSSGSAKRKTEKSNYSVQNKVRYQVKTRHPYSLSPQS
FT                 SIDCECFIEPYLDSEKTHFFTRQRQNDHNVYSLDHFVSKVIKGTIIVPMFN
FT                 NKAKNHFLKAGTVVGSLSEFSIPSHWITDSSPKQSKKEKTERQAKIEPXSX
FT                 ENGSEXSDKATYNSSQKPRHLNFSGNKKPTTRQQRHQNMPKNKKPKGNFTK
FT                 NISKNRTHHAQNSDALKNKSLNDQPQVINTSTRRNNFGYITTIKLSEDTAL
FT                 AARSETICVGTIKDPHAVNIGDSYYFEPVAEVKNGVFAGRALINILPKSKV
FT                 LIKLINVCDQEIGLQKGTLMGFVDPINKYSVHRYSYPAYRDETVNREAKKH
FT                 VNADLSHLPKEKRKPLQDLLNKYSDVFITGPKDKLTTTSLVEFDIPTGDAK
FT                 PSYRRQYRIPLSQKPHLQKLADELEEQGVIEKSPSPWNSPVILVQKKTKDD
FT                 NGNPELRFITDFRHINKLITVSHYPLPLIDDVIDQLANSTHFSQIDLSKAY
FT                 YAVNVKKEDVPKTAFTINQNSYVYRKMPMGLCNAPATLARLIQITFNKMIG
FT                 RDVMCYMDDIILYTADFQRHLDRLEGVFKRLRMANLKINAKKCAFLKDKLD
FT                 FLGHTVSAAGLEPNDLKVKQILDLKPPRNLREVQMVMGIFNYLRRFIQNFA
FT                 KISADIVKLTRKNTPFHWGEAQDKAFKALKEKITNYPVLMFPDPEKQFFLT
FT                 VDASGIGCGAVLSQKDDSGKERPVAYASRGFSEPEQKYSTIEREMIGIQFA
FT                 VSHFKPYLFGRKFTIFSDHMPLKNLNSVPFRNSRLERAAVFLQQFDFNMVH
FT                 IAGKSKAMSQADALSRLPTNLNKISDSILQNPLFSRKSIRTFQINDPYCRQ
FT                 IVADLRKTERLRNKYYFLDDDKLLFRAGNSWNQDDKLYIPKEAIPRVLEIC
FT                 HDKTAHVGFDKTLELAKRHFFWPQMNKDVSNYVASCQNCREHKRSNFDKPA
FT                 PLQSFTYPTRPWELVSWDFVGPIAPDLSNNKYILTIICHFSKFLVAFALRD
FT                 QLATTVAKCLSDVISRYGVMHKIFSDRGPQFTGTILKDVCKFLGIKQIFTT
FT                 AYNPKSNGLTERTNQTIIKMLSGSLDYNDVNWGAQLPLVVSAYNNTINSST
FT                 KYSPNFLFFGRNFDLPFDTFYKPRTMNYNIDNNYPAEVENRLKLAYQNVEK
FT                 TLQKKAEKRKNFYDRKTKEPDFTIGQKVTLFTPTIKRGRFKKFNNKYEGTF
FT                 IILQKIGPVTFKIRCMTTHKTQLVNANRLKPIVERKSHLSYNYPPMISRIN
FT                 EEWLKQKQEERRKQRENTGSDDSSKSNLEPENKSGNSALLIDVPSNASIEP
FT                 PSSPLPPSPEGVGSAAHPLDQDINDEEERNLPLPLSSSLSSSDSEHDFGAS
FT                 TPKAKKLIKLNLADFKTPSDDSDLSPISSPSYERYIPGTSRKKEKRTRKTD
FT                 NFINESIKKITKKLTGKKPIKQKMIKNSKNLPLRRKRSTKKLIRNKTWAKV
FT                 PRHQMKLRSQTESERSSPSFFEDSYIELEDAQSEEDIFHTPNQLSVDQELS
FT                 ENHLNRNIASNTEKTLCNESSDSGEESEKMHQPAISSNISKKEEQNEVGEN
FT                 SRENLGRISPELERESNESSSGSLLSLNSQVEPDFDCQIERSPTPSPPPPL
FT                 PPKKRDLILESYINASAATRKGILKAHKQNPGMITFLKENGKKYNLRNVPE
FT                 RKSRKAQLAEMLNFKSMFYNI"
XX
SQ   Sequence 9482 BP; 3439 A; 1752 C; 1689 G; 2593 T; 9 other;
     attggtggca gctatagtga ttcgaatcca caaagtttta aagagattac actgtccgca        60
     attaatggca gcaagtgatt cgaaccaaag atacgcgata gttacagtta aatcggtgat       120
     agtttttctt cgagaacgaa aactaaatcc ttcgtcgacg aaagtggact tcaggttagt       180
     cgtgatactt taagataatt caatgattgc atttccctgt gttcctatgt ttaaaacctc       240
     cccttttccc ctccaccacc cgctcatatt tttccttttt ttcaggttgt gttttagaaa       300
     ataagaaaag tgctaatttt aagggcagat aaaaagttac aaaaaacttg tgattttcca       360
     acgatttatt tcaaaagaaa aaaaatcgta aattatagca ataatgtcgt ctcctgatgg       420
     tmatatttca ggagcatctg aaacaaacaa cgatgacaaa gagctgatta gtcttatgtt       480
     aagtaggttg ccatattttt cagacaaacc gaatcaaaac ataggctatt ttcttaacga       540
     gttcgaagaa attaaacaac tggctaagtg gtcagagcaa aaagcgtttt atttttgccg       600
     aacaaaatta ggtggtgaag tgctgaatta tgtaaaaaat cagccagaag ttactgaaca       660
     tacgtacgag tctctgaaaa aattgttagt ctctaggtac gaaaaagtag cagatttagg       720
     ttatgaaaga attmaatttt atactagggc acaagagcca ggagaaactg ttagggaatt       780
     tgcatcaaaa ttaagggagc ttggatacgc atgtaaagag aagggaatga acggagccga       840
     agaagaaatt ttacagagac acctgcaaga gcagctgaaa acaaattttc tcaaagggct       900
     aaatgactca attagaagat ttgtcattgt tagaaggcca gcaacgtttg aggacgctat       960
     taaagaagca atgttcgaag aagagcaaat taaagaaatt amatgtgatt actgtcagaa      1020
     aaaaggacac ttagaaaaag attgtagaaa taaagcaaga tcacaatcaa gacatactag      1080
     tagtcaaaat tttaacagta gaaacaataa ttatggtccg caaaacgaaa gaagagagta      1140
     taatagaagt caaaatcaaa accaaaatta taactctcaw aatggatatt attcgcagaa      1200
     gtttaatcag ggtaataatc agaattacag gtactcaaat aatcaaagta gccaggatat      1260
     caggcagcaa aataatgata ggaatgtcaa tttagtttca aaaaataagg atttttgaat      1320
     gcccccacta gaaatggtgg ggggaaaaaa ggtgacaatg ccatttcaat cccgttgaga      1380
     aaaaatgatt tgggatatgt tgtaaatatt agagtaaaaa atgtaaaaaa katcccagct      1440
     tttttaatcg atactgggag tgtcatttcg ataattcaga gtaacgttct agcaggttta      1500
     attaaatttg tgaataggaa taggcgtagt tatctgacga atataagtga atcaaatgtc      1560
     ttaactttag gtacgataat gctcacgctt ttgcatgatg gcaaaagatt ccaacaagaa      1620
     tttcatgtcg ttggaagcag aaatttagac ccagtaggag gcataatagg catggatttc      1680
     atcgaaaaat attctgccaa tctaatgttc acagaaaata gtatgacagt agcacgcagc      1740
     gatacttacg caaatgtcct aagatgggca ccaagtaatc caatttttgc ggaaccagat      1800
     aggtctgtga ctagaaaacc tgacaaaatt caggaaaaat caaagtatac tcacagaaaa      1860
     atgaaacatg gagagcgact cttcaaaaac agtaggaaaa ttaatagcaa ccataatgcc      1920
     gtttctagtg gctctgctaa aaggaaaaca gaaaaaagta attattcagt ccaaaataag      1980
     gtaaggtatc aggtcaaaac taggcaccca tattctctca gcccgcaatc aagtatagat      2040
     tgcgagtgtt ttatagaacc atatcttgat tcagaaaaaa ctcatttttt cacgaggcaa      2100
     aggcaaaatg atcataacgt ctattcattg gatcattttg tctctaaggt aattaaaggt      2160
     acgattatag tacctatgtt taacaataag gccaaaaatc attttttaaa ggcaggaaca      2220
     gtggtaggaa gcttgtcaga gttttcgatt ccatctcatt ggatcacgga ttcttcgcca      2280
     aaacagagta aaaaagaaaa gactgagaga caggcaaaaa tagaaccaam atcttgkgag      2340
     aatgggtccg aaawttctga caaagckacc tacaatagtt cacagaaacc caggcatctt      2400
     aatttttcag gcaacaaaaa accaacgacg cggcaacagc gccatcaaaa tatgccgaaa      2460
     aataaaaaac cgaaagggaa ttttacaaaa aacatttcca aaaatagaac gcatcacgcg      2520
     caaaacagcg atgcattgaa aaataagtca cttaatgacc agcctcaggt aatcaacacc      2580
     tcaacgagga gaaacaattt tggttacatc actacgatca aactctcgga agacactgca      2640
     ctagccgcta ggtccgaaac tatttgcgta ggtacaatta aagatccgca cgcagttaac      2700
     ataggtgact catattattt tgagccggtc gcagaagtta agaacggtgt ttttgccgga      2760
     agagctttaa taaatattct tccgaaatcg aaagtcttga tcaaactaat aaatgtgtgt      2820
     gatcaggaaa ttggattgca aaaaggaacc ttaatgggtt ttgtagatcc gataaacaaa      2880
     tattcagttc acaggtattc ctacccagcg tatagggacg aaaccgtgaa cagggaggcc      2940
     aaaaagcatg ttaatgcaga cttatctcat ttaccaaagg aaaaacgaaa acctttgcag      3000
     gatttattga ataaatacag tgacgttttt atcacgggtc caaaggacaa attaacgaca      3060
     acgtcattgg tggaattcga tatccctacg ggcgatgcaa aaccatcata ccgaaggcag      3120
     tatcgaattc ctctctcaca aaaacctcat ctgcaaaagt tagcagatga acttgaggag      3180
     cagggtgtaa ttgaaaaatc cccctccccc tggaacagtc cagtcatatt agttcagaaa      3240
     aaaactaaag acgacaacgg aaatccagag cttaggttca ttacagattt tagacacata      3300
     aacaagctca tcacggtatc gcattatcca ttaccattaa tcgatgacgt aatagatcag      3360
     cttgctaact ccacccattt ttcgcagata gatctttcaa aggcatacta tgcagtcaac      3420
     gtaaaaaagg aggacgttcc aaaaacggcg ttcaccatta accaaaattc atatgtgtat      3480
     cgcaaaatgc ctatgggact atgcaatgcg ccagccactt tggcgcggct aattcaaata      3540
     actttcaata aaatgattgg aagagatgtc atgtgttaca tggatgacat cattctttat      3600
     acagcagatt ttcaacgcca tttagacaga ttagaaggag tttttaaaag actcagaatg      3660
     gccaacttga aaatcaatgc taaaaaatgc gcttttctta aagataaact tgattttttg      3720
     ggtcatacag taagtgctgc aggattagaa ccaaacgatt taaaagtcaa acaaattttg      3780
     gatttaaaac cacctagaaa cttaagagaa gttcaaatgg ttatgggaat ttttaattat      3840
     ctaaggagat ttattcaaaa cttcgcaaaa atcagtgcag atattgtcaa gttaacgaga      3900
     aaaaataccc cttttcactg gggggaagct caagataaag catttaaagc acttaaagaa      3960
     aaaataacaa attatccagt tctaatgttt cctgacccag aaaagcaatt ttttctaaca      4020
     gtagacgcat caggtatcgg atgtggggca gtacttagtc aaaaagacga ttcaggtaaa      4080
     gagcgtcccg tcgcttacgc atccagagga ttttcggaac cagagcaaaa atactctact      4140
     atagaaagag aaatgatagg aattcaattt gccgtcagtc attttaaacc ctatctcttt      4200
     ggtcgaaaat tcactatttt ttcagatcat atgccgctga aaaatctaaa cagcgtaccg      4260
     tttagaaatt ctaggttaga aagggccgcg gtatttcttc agcagtttga cttcaatatg      4320
     gttcatatag caggaaaatc aaaagccatg tcacaggcag atgcattaag tcgcctaccg      4380
     acaaatttaa ataaaatttc ggattcaatt ttacaaaatc cacttttttc tagaaaaagc      4440
     atcagaactt ttcaaataaa tgacccatat tgcaggcaaa ttgttgctga cttgcggaaa      4500
     actgaaagac tccgcaacaa atattatttt ttagacgatg ataaactctt atttcgtgca      4560
     ggtaattcat ggaatcaaga tgataaatta tatattccga aggaagcaat tcctagggtt      4620
     ttggaaatct gtcatgacaa aactgcacat gttggatttg acaaaaccct agaattagct      4680
     aagagacatt ttttctggcc gcagatgaat aaagatgttt caaattacgt cgctagttgt      4740
     caaaactgtc gtgagcataa acgctcaaat tttgacaaac cggcaccgct gcaatcattt      4800
     acctatccga cacgtccgtg ggaactagtt tcatgggact tcgtcggtcc aatagcgcca      4860
     gatttgtcaa acaataaata tattttgaca ataatatgcc atttttcaaa attcctcgtc      4920
     gcttttgcat taagagatca attagcgacg acggttgcca aatgtctcag tgacgtcatt      4980
     tcacgatatg gagtgatgca taaaattttt tcagataggg gacctcaatt tacaggtaca      5040
     attttaaagg atgtttgcaa atttttagga atcaaacaaa tattcactac tgcatacaat      5100
     ccaaaatcaa atggtttaac agaaagaaca aatcagacaa ttattaaaat gctgtcagga      5160
     tctctcgatt ataatgatgt taattgggga gctcaattac ctttagttgt ctcagcatac      5220
     aacaatacaa tcaattcatc aacaaaatat agtcctaatt ttttattttt tggaagaaat      5280
     ttcgatttgc catttgacac gttctataag ccaagaacaa tgaattacaa tattgacaat      5340
     aattaccccg ccgaagtcga aaacagacta aaattggcgt atcaaaacgt agaaaaaact      5400
     ctgcagaaaa aagcagaaaa aagaaaaaat ttctatgata gaaaaacaaa agagcctgac      5460
     tttacgattg gtcaaaaagt aactcttttc acccccacta taaagagggg aagatttaaa      5520
     aaattcaata acaaatatga aggaacgttc ataatccttc aaaagatagg tcctgttaca      5580
     ttcaaaataa ggtgtatgac tacgcataaa actcaacttg tcaacgccaa taggttaaaa      5640
     cccattgtag aaagaaaatc gcatttatcc tataattacc ctcctatgat ttcaaggata      5700
     aacgaagaat ggttgaaaca aaaacaggaa gagagaagaa aacaaaggga aaatacaggt      5760
     tcagacgaca gtagtaagtc caatctagaa ccggaaaata aaagcggcaa cagcgcttta      5820
     ttaattgacg ttccatcgaa cgcatcgatt gagccaccga gctctcctct gccaccctcc      5880
     cctgaaggtg ttggcagtgc agctcatccg ctagatcaag atataaatga cgaggaagaa      5940
     aggaacttac cccttcctct ctcctcttca ctttcaagtt cagattcaga acatgatttt      6000
     ggcgcaagta cgcccaaagc caaaaaatta attaaattaa atttagctga ttttaaaacg      6060
     ccgagcgatg atagcgactt aagtcctatt agctcaccgt cttatgaaag gtacattcca      6120
     ggtacatcca gaaaaaaaga aaagcgaact cgtaaaactg ataactttat taatgaatca      6180
     attaaaaaga ttacgaaaaa attaacaggc aaaaagccaa ttaaacaaaa aatgatcaaa      6240
     aattcaaaaa atctgccctt acggcgcaag cgatcaacta aaaaactaat cagaaataaa      6300
     acttgggcta aagtcccaag acatcaaatg aaattacgct ctcaaacaga gagtgaaaga      6360
     agttcgcctt ccttttttga ggatagctat attgaactgg aagatgcaca atcagaagag      6420
     gatatttttc acactcctaa tcaactttcg gttgatcagg aactgtcgga aaatcatctt      6480
     aaccgaaata tcgctagcaa tactgaaaaa actttatgca atgaaagttc ggattcagga      6540
     gaggaaagcg aaaaaatgca tcagccagca attagttcaa atatcagtaa aaaagaagaa      6600
     caaaatgagg tgggggaaaa ttcaagagaa aatttaggta gaataagccc agaattagaa      6660
     cgggaaagta atgagtcaag ttcaggttca ctcctttcat taaattcaca agtagaaccg      6720
     gactttgact gtcaaatcga aaggtcaccc accccgtccc caccaccacc cttaccgcct      6780
     aagaaaaggg acctaattct agaatcttac attaatgcgt cagcagcaac aaggaaagga      6840
     atccttaaag cacacaaaca gaacccaggt atgataacgt tcttaaaaga aaatgggaaa      6900
     aaatataatc ttaggaacgt tccagagaga aaatctcgaa aggcacagct agcagagatg      6960
     cttaatttta agtcaatgtt ttataatatt taagcgacca aagggagaat taactctaaa      7020
     taaagatttt tcttcgtctt tttctctcac tctcactgtc aatatagtac tcaatatctg      7080
     agccgcaacg tatggatgtt taaaccaata aacattccca attccattta gggaagcatc      7140
     attttttgtc tcatcaggta gacaaaactt tagttaaaac tttagagaca ataatttctt      7200
     ttaaaaagag tttattaaac cgaaaaatgc aagcacgagt agtgagctac ttgcgcaact      7260
     cctttttcgc cctgatcagg ctgaaaataa aggaaagatg atcttttgtt cagctcattt      7320
     tgacacttga gcccttaatg cacgtatact tttgttttta ttttttttta atttcggggc      7380
     cccggatcga ctcacagtgg ttaccttaat cggtcgtcac agagtcatat agttgaatgg      7440
     acgccttaac cagccttcat tcaatataat tgtttctaat tctgaagaaa cttaactaat      7500
     gttgcgtgca gaagggacac aactgacaaa agtgctaaac acataggaaa ttcttgaacc      7560
     aacagttttt tttttaagga aaaaacatca atgaatttta ggaaaattta aaaaactcag      7620
     gaaagtcttt tgtttgagaa aaatcctaag tgggatactt ttctctttct atttaaaagt      7680
     ttgctcattg aagcaccaaa ctagaatttt tagttggcat aactagcaaa aagcactatg      7740
     gtataatata taaataaatt atttgaaaca cttaccttgg tagtaaaagg gcaccgaaag      7800
     gcaagcatta caggtgaagt atatattcca ggaaataagc atccattaaa ctagaacttc      7860
     aaatgcattt caccatttca ccacttttag attttgaaaa atcggaatat taagacgaaa      7920
     aattcgaaaa atagacaaaa ttaagtctag caatcgcgaa tgcgcgatta aaaagtaaaa      7980
     attagccatg tgtgcggcgc tatagagtcg tatcgcacga atattttttt ttaataagtg      8040
     ctatgttaaa ttttgttttt ttttcaaaaa tattggagaa aaaactaaat aaaaactaac      8100
     atagattact gacagctcga gtcaaagttg tcatttcaaa tcatttgcga attaaaccgt      8160
     tggaaaatca ggtcttaatt ttcaatttca gtatacattt ccattgctat aactattaga      8220
     aatgaataaa agttacttgt ccttatttat atcatgaaac agcataacgg ttcaatacgt      8280
     accgattctt gcaatttttc caaatttggc attcattttt attttgaaaa aaagcatata      8340
     tttttattat tattgggtat ttttctttat tcaagagcat ggcctggaaa attcttccta      8400
     tacaaagcct tccattatcc caatgcaatc aaattaattg tcttgaggat tgcgctctaa      8460
     ctttgaaccc atataaaacg tatacctgtt aaattacata aacagtcgtc tactctcagg      8520
     aaaattcatc tgattacaga tcttcctcct atgaccaata tacgaagcat cataatcacg      8580
     aagcattgca gcaaacaagc agcatacggg gcaacagtca tcaaccaata ggcgtgacac      8640
     atctccgcaa atcaattcaa gatggcacag attcttccga tgaacttcca tcaaggcagc      8700
     aacgcaaaat tggaccatgg cactgggcat agacggaacg ttatgcctgc aaacactcga      8760
     agacaacctt ttgcatcttc ccacttttca ccatcgtcca attacatgga ggcgcagcat      8820
     ccccaccttc catggtgcaa aattacacgg aggcgcccgc gcagcatccc cactttccat      8880
     ggtggagaag tatctaccgt ggcaacactc tggcaaaatc gacgcaacag acgacaagtt      8940
     ggtgacaatc aagtcactac tatggactca gcggtcaagc attacttttg aatgctaatc      9000
     tatgaactct ctggtctggt ctatatcaac ggcagctgtt caaccgaatt ttctgattgg      9060
     cgcaatatca cgactccatc ggccatccaa tgggaaatca acggcattca agcaaataca      9120
     cagtctcact tggacctggc ctggaccggc aatcattatc tcacgactga aacgtctctg      9180
     aaaaggccat tttcaaaggc atcaatcaac agagctttca gcccaatttt cctttttctt      9240
     tttaaaagag ggtcatcaat tcgaactttg attcgttaaa aacttttact tttttatttt      9300
     ttttctcaaa agtttaaatt tcattaatgg aacacacttt attatattat ttactcagtg      9360
     gttccaattt caatttttat cttaaatttc tcaatcgcag aaattgaccg gaaaaaatat      9420
     atttccgttt attttttatt taggtctcac ggggacgctc gacttttgag ggcccccaga      9480
     gt                                                                     9482
//
ID   Gypsy-40_TrVa-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-40_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-392
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 344-344 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 392 BP; 115 A; 86 C; 73 G; 117 T; 1 other;
     tgtgacgcgg agcccaataa tggttagata acacgtatcg gtcgcaactg ttttgagcta        60
     attctggcca tgaccaagga catgacaata attagcttaa actactttat gcacccttag       120
     gtgataaaca gtgtaggagt ggaatacgct aatgaagatt ccactcctga cacaataata       180
     tataaggtga atatcacctt agagatgctc ctcttgttcg ttctggttct tctcttcgta       240
     cttctataag ctccgtgtca cggctccgaa accakctgta attatttgtg aataaaacct       300
     ttgtataaac tcgcaacgct cgtctttgac ttaaacgcta ccacgaatca cgttattata       360
     ttataaagtg ttcagtctga ggaccgacca ca                                     392
//
ID   Gypsy-410_AA-I repbase;    DNA;    INV; 6431 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-410_;
KW   Gypsy-410_AA-I; Gypsy-410_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6431
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6431
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2093-2093 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6431 BP; 2309 A; 1381 C; 1046 G; 1695 T; 0 other;
     ggaggctccg gcgagatcct ccatctcggg aacagtataa gtgatataag tgaagtgtaa        60
     aaatctttga aaaattcttc taagtggttc caagagccac accttcaata tatcacaaag       120
     cgacccgcag gacaccgtgg atcacccgat tggcgtgcca ggaccccagt agcgctccag       180
     caaaaaggat aatccgaact cgcctgcctg cggatccccc gagtgtgagg acgacagcca       240
     ccaaaagacc aacgatccaa tgttggccgg actcaggaca cggtccttta tgtaagtttt       300
     tccatttttt attataaacc gactaaagga gtattttttt aataagagaa agtgcaattt       360
     attgatgaaa tcaaatcgaa ttatcaaata gtgattattt ctataagtgc aatcaatttt       420
     taaatctgag tgaatacagt gaatcaaacg atacagtaga tttagctttt agtgtctcat       480
     agttttgcta cattagaatc aaacaataat ggctaatcca cacgccgcta tcaatggaga       540
     gccggttatc ccaccgctaa ccatgcagca atttattgag ttagggaagt taccagattt       600
     tctgcgtgac ctacaaccct ttgacggtcg accaaccgaa ttaattaatt ggttagccga       660
     cgttcaaggt gtaatcgata tgtatcgtga acacggtgca accgatgctc aacttgagct       720
     tatcggacgt tctgttcgaa gaaaaattaa aggcgaagcc gccgacattc ttaatgcaaa       780
     taatatcatg cacaattgga acaatatcaa aagtacactt ttgctgtact ataaagataa       840
     aagggattta aaaaccctag attttgagtt aacatccatc aaaaaagcac ctaatgaaag       900
     cttagggagt tattattctc gtgttaatga gctactatcg tcaattatcg ctcaaattca       960
     gacagaacca aaatttttcc tacatgcaaa ttcacacatt gattactttc gagaaaaggc      1020
     aattgattct tttattaggg ggctagaaaa acccttatgc caacttttaa aaacctacaa      1080
     cccaaaaacg ttaaaccatg cctaccagtt ttgtctagag tattttaata tggacacacg      1140
     gtctgctcca tatcgaaatg aacatacctc taacattccg agaccaagag accttgaacc      1200
     cccgagactc ccaccaagaa ggcagccact tcatcccacc atacctccaa gaaatcatca      1260
     acctgtcttc catcaagccc gaccaatgtt taatcatcct ttcccacaac caaaattcca      1320
     gaataatcct ttccaccaac ctcatgcttt ccaacaacca agattccaaa acaatccgtt      1380
     ccctcaaacc aatagacctc ttcctaatcc agagcctatg gacgtggacc caagcattcg      1440
     gtccaggaat attaactata gtaacagacc ccaaatggga ataaaaagac cccaccaatc      1500
     tttcaaccaa cctcaacatt tcaaacgaat ggctcaccca ttgcaatatg attattccta      1560
     cgatccctat tatttttacc cagattacat cccagaatac gacgatatgg attatcaata      1620
     cgatccgcaa gaggaacaac ctcaaccaga atctcttcag aatgatacac ccacatcgga      1680
     agcttctctg ataaatcaag aggaggatcc tcaaccatca acttcatccc aaactaattt      1740
     tttagaatgg aagccgagtt ggtaggtcca actcttccat acattacatt aaaaaccaat      1800
     atcggagaat tcccttttct cgtagataca ggggcaaata ttaacataat cgacccgaaa      1860
     ttggcttaca aatataaagg tgctaagccc tatgatttta aagcagatga tatttcaagc      1920
     gctagtggca gatttgaagc aacatcagcc atagacatag aattctttta tcctaaaata      1980
     aatcattctg cacaattttt acttcataaa ttccaccctt ttttcaaagg aattattgga      2040
     acaggcattc tacattcctt gaatgcagta gtcgaccttg aaaataacat gttacatctg      2100
     aaaaaaggta ataaaacttt aagcacccaa ctttcacgat ataatccctc aaacccaaca      2160
     tcaaacaatt tgttcagaac ttctcatttg ttgacggacg aaaaggaaga gctccataaa      2220
     attttaagtg cacataaaga tgtgtttcac cagccagata caaaattgac ttgtggtacg      2280
     acagtcgaat gctctattaa caccactgat gacgtaccaa tacatcagaa agtgtacccg      2340
     tatcctgcag cctatacaga agaagttcgg aagcaagtcg ataagctttt agctgacggc      2400
     ataattcgcc cttctcggtc tgcatggaca tcaccggtat ggatagtgcc aaaaaagaca      2460
     gatgcatccg gtgaaaaaaa gttcagaatg gtcattgact acaggaaact gaacgaaaag      2520
     accatttccg atcgctatcc aatgcccgag attggttatg tgattgacca attgaaagga      2580
     caaaaatatt tctcgacatt agatcttgcg tctggttttc accaaattcg aatgaaaacc      2640
     agcgatattg aaaaaacagc attctctatc aataatggca agtatgaatt tactagaatg      2700
     ccattcggac tgaagaatgc gcccgcaact tttcaaaggg caattgatga cgttctcaga      2760
     gaccacatcg gcaaaatttg ttacgtttac atcgatgatg taatcgtttt tggaaaagac      2820
     cttgatgaac atttgaaaaa ccttgataca attttcagaa ctttgaataa tgctggatta      2880
     aaaattcagt tggataaatc agaatttctt caccaagagg ttgaattcct gggctatgtc      2940
     atatgctcag aaggaattaa accgaatcag aaaaaaatcg aatctattaa tcagtaccca      3000
     gaacctaaaa atctgaaaga acttcgagga tttttgggaa tgatgggcta ctatcgtaga      3060
     tttgtcaaag attttgcaaa aattgcaaaa cctctgacaa tccttctaag aggggagaga      3120
     agtcctatgt ctaacaaaaa gatttcgttg agtgataaag aaaaacaatg tttccaaaag      3180
     atgaaaagct tactatcatc gtccgacata ttgatttatc ctgatttcaa caaacctttc      3240
     atcttgacga cagatgcctc cgattttgca atcggtgctg tcttatctca aggtgagtta      3300
     gggaaggacc gacctataca ctttgcatcc agaactctat ctaaaacgga ggaaagatgt      3360
     tcagtgcccg aaaaagaaat gctggctatc cactggtcac ttcagacttt tagaaattac      3420
     ctgtatgggg caaagtttaa aatattgacg gatcatcaac ccctcacttt cgcactatct      3480
     ccaaaaaata cgaatgctaa actgaaacga tggaaggcct atcttgagga acatgactac      3540
     gagataatat acaaacctgg aaaaacaaat gtagtcgccg acgctctgag cagaattata      3600
     tgttccatga cagcaaccca gcattctgcc gaaaatagcg acgactttta cattgaatcc      3660
     acggaagcac ctatcaatgc tttcaaacac caagtcattc taaaagaagg tccagacaaa      3720
     gtaacggtaa ccaacccatt tccaaatcat actagagtag aaatttcaaa aaccaacttt      3780
     aatgaacatt caattttaca gattctcaaa aatcattttg acttgtctaa ggttaacgga      3840
     ttattaacga ccgaacattt gatgggcaaa attcaagaga tatataaaca acattttggc      3900
     tccaagagat cgttaaaaat tcgtttcagc cagacaattc ttcaagatat acaacaggag      3960
     gacgaacaat ggaatgtcat ccgacaagaa cattgcagag cacatcgtgg agctgaagaa      4020
     aacaaattac agattttgag gaagttttat ttccctaaac tttctcaaaa gcttaaagat      4080
     ttcattacaa attgtcaaac ttgtcacgag aacaagtaca accgcaatcc tatcaaatat      4140
     ccccttcaag caaccccaat tccaaacgct cctttcaaaa tcgctcatat cgatatcctc      4200
     ttccttgaaa atgaccactt ccttacctat atcgacaaat tttccaaatt cgctcagatt      4260
     aaacatattg attccagagc cgctgtcgat attgttcccg ccgtaaagga gatcctatta      4320
     aaatataatc caccagaaac attagttatg gacggtgaaa aatcgttcat gacaggagaa      4380
     ctggtaaact tttacaacac ccatcatatc gaaccctaca ttaccgcaac cggtcgtagc      4440
     gaaatgaatg gtgttgtaga acgtttccat tccacaattt tggaaattta tagaatgaca      4500
     aaacaggaaa atccaggaaa acccgttcac gatttaatac ttttatccct caataaatac      4560
     aactccacca tccatagtag tacaaaacat acccctttag aaattatact tccttctccc      4620
     agaaccccag aaattatcga aaaagtattt aaaaatctta cagaaaaaca gaaaaaggac      4680
     ctgaaatacc ataataaatc aaaaaaacca acagaacttg aatctaacca agaaatatac      4740
     gaaaatgcaa gacaaagaat taaacacaaa ccccgattca aaaagaataa aatcagacag      4800
     gttaacaaaa gtacagtaac tatggatgat gggaggaaag tacataaaaa cgatatcaag      4860
     gttaggaaga tttaactctc cttttattat actctctttt ttcagaaccc tcatgtatct      4920
     aagtataacg ataggtgaaa agataaacgt taggagaata gatcacttac caattgttgc      4980
     ttttcactca ggtactgcta ggatacaact tacctctcat atctatatcc atcatttcaa      5040
     cattacctcc cttaacaatc atgtagacag tctgagaaac caatttgaac agctaaaatt      5100
     caatcaattt acaaaactca cttcgcaaaa atttgacgaa attcagcaaa tacttagcaa      5160
     tttaaatcca tttaaaagac ataaacgttg ggataaatta ggaacaggct ggaaatttat      5220
     tgcaggtagt ccagatgcaa acgacttaaa attaataaat tcctccatta atgaacttgt      5280
     aagtaacaat aatcaacaaa tcagaattaa cagagcactt aatctgcaaa tgaaagaatt      5340
     agtatacaaa acaaaagacg caatagagtt agcaaattca aaatccatgg aaatatattc      5400
     gataaacata tttctcaatt taaaatatct agcagataaa ttaggacaga ttgttgacag      5460
     tatttctctc gctaaagtag gaattcttaa ccaaaatata cttagtcagg acgaaatagg      5520
     gattctatat caagatttaa tgaaacagaa tattacactt cacaatgcac tggaagcact      5580
     aagttttgcg gatacaacga tcgccaccaa caccaaggag ttgactctac taatcaagac      5640
     acctattttg gataagagaa ttttcaacaa gattcacgtc ttccctgtta catcaaacca      5700
     taaacaaatt catttgacta agagaaatta tctgaatcac gagaccggta gctacattgt      5760
     aagctcattg acggaaaaca tatacaaaat ccaggaaacg gagttcgata actctagatg      5820
     tgtaccaaac cttctctccg gacagcaagc tagttgcaat tacaccctga acccacctga      5880
     tgaagaaatc atcatcataa ataatgaaaa cattattttg aacaccgatg gaaatattac      5940
     ctttacatcg aattgtggaa tcaacaaccg taccctaact ggaacatttc ttatatcgtt      6000
     tcatgattgt gaaatgatca tcaagaacat cagttattca aacatcattc ggaacatggc      6060
     tggaaaccta atacaactac ctttagacgg cctcaatata cagaaacaat tcaccatagc      6120
     aaacctgagt cttgagcatt tgcataattt gcacctggag atgaggaagg aaatggatta      6180
     catccggcta aacaacacaa gcatcgaatg gccatcttgg cctctatttg gaggaatctt      6240
     ctcattaccc ttcacgatta tcggttttgc gattcttttg aaaattttct cccacagaca      6300
     agctacagta aggatacaaa catctaaagc cacaaccaat caggaaccag tggtagaact      6360
     tcaacccagg attagatcct tgactttgat ggacgtgatt cggacggagc ctcaactctc      6420
     aggaagggac g                                                           6431
//
ID   Gypsy-410_AA-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-410_;
KW   Gypsy-410_AA-I; Gypsy-410_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-304
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-304
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2107-2107 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 304 BP; 88 A; 62 C; 86 G; 68 T; 0 other;
     agttagcaac ggagctaccc gggcggtggt aaccagaaaa gctgacgccc tcattgcagc        60
     gagttggcaa cgggccgcca gaacgagggc agtgcagaac gctgacgacg gcattggagc       120
     ggatggcaac atcgagcgac ttggcagttt cggtgtacgg cgacgacgac gacggaaagt       180
     gcaagtgcaa gcattaaatg tgtaattaat ttcgatattg aataaaccag ttagttcgat       240
     ttcggctcta gggtagttaa gtagcttttt ttaaaaagaa acttccatcc gtgaaaattt       300
     aact                                                                    304
//
ID   Gypsy-411_AA-I repbase;    DNA;    INV; 6672 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-411_;
KW   Gypsy-411_AA-I; Gypsy-411_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6672
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6672
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2094-2094 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6672 BP; 2216 A; 1248 C; 1509 G; 1666 T; 33 other;
     aatggcgccc aaccactaag taacgatact gatcaagatt gcaaaaccaa aaatctggag        60
     tggataggaa ggttagaggt tagagagctc tttatcagtg aaaagctaat ttcagaaggt       120
     gaagtactgg acacgagtga ctgcttaccc gagattcctc agtagctcat attgttcgaa       180
     tcgtttgccc ttactagtgc gcgtacactc gcgatagtaa gcaaactgtt ttgataattt       240
     accaaatttc ggtaaatcta aactgatcgg tcaaatgtgg attttttatc atttaatggg       300
     tcttgattct acctaggaac aaataattgg tgttaatatc aacgcatttg aagctattgt       360
     tcaattcgaa gctattaggt tataaaattt tgcaattgtt ttttggctat tctttcgaat       420
     attgtatcgt agcaatggat ttacagtcga tgtacaaagg tatggacgtt tcacacctat       480
     cgattgatga agttgaacat gaactattgg ctcgtaacat attgtttaat attggcgaac       540
     acgagagtat taaacgacga aagcttaagg accaaatgaa aaaagagaag gcgatggata       600
     atgtgtcggt tgttcactcg cctgtgtgga gggacatggt wgaggaaata gcgataataa       660
     gatcaaagtt aacagtgata ggaggccttt tagakaatcc aaaaacggac agccgccagc       720
     gtgagaagct caagacacgc ttggtccatt atagggtgag atgctaccta ctctctcgag       780
     cttctcgagc ttataaacat atgaaggaaa ttcaagagat tagtatgtgt gcgataaagt       840
     tgctgcagga gcattttccw gaggcaaact atcagaaaga kaagcaagaa tcgaaagaat       900
     tagaacaaaa tgtgaatgac gctctgaaag aaataaggaa tgaaatagaa attctcaatg       960
     aatctgcttg cgctgggaat cttgatcaag atgatggaca agatgaagca agtggtggaa      1020
     wcgagtcaag cataaaagcg aaggaattag atttgaacaa atcaatgctg aaatcggaag      1080
     caatactgaa aaagttatcg gaatatgaga agggtgacaa tgttaatgcc gctgacttaa      1140
     ttcagcattt caaaaatwtt gtcatccagt cgaccgaaca ggaaagaaat cgaagagaaa      1200
     tggaaattga acaagaaaaa cagcgaatca gagaagctga ggaaaatttg gaaaggaaac      1260
     gtcgcctcga aaagcttcta ctgacactga ataataaaat acaaacagaa ccaaaactga      1320
     ataaacttga attcccaaca cacgaaacca cggagaatga gaaagaaccc gaaagaaaas      1380
     aattgataaa tgtaccgaaa ctgaaattga acttgcgaga aatkagatcg gaaagctcag      1440
     aatcggaggk tagatcggtt agctcttcag aaaaggaaac aggaggaagg gacagagaat      1500
     ggagaggtca tagagtaaag agagcgtcga aaaatccgaw aaagaagcat tcttcgactt      1560
     ctcacaagaa aaagagcaag agaatgagtt cctcatcaga cackctggag gattcgtatt      1620
     ctcagagctc tcgatcttcg aaatcatctt ttgagagttc agattctagc gataggaatg      1680
     ataggagamg aaggagaagt gataggaaac actmtcaaaa gccactgaaa agagttccaa      1740
     tttcagattg gaggctaaaa tatgacggca aagacaatgg tcgcagatta ggagaatttt      1800
     taaaggaagt taaaatgaga agtaaagctg aagatatctc tgaccgtgag cttttcagag      1860
     gggctatcca tttattcaca ggaagagcca aagattggct aatggacgga ttggaaaata      1920
     gggattttcg aacgtggtcc caattgaagt cagagctgaa gcgagagttt ctccctccag      1980
     atctggattt ccaattggag atacaagcca caaacagaag acaggctaga ggagaacgat      2040
     ttgttgattt tttttcacga tatgcttaag attttccaat ccatgactcg accgatgtcg      2100
     gaaaaacgca agtttgagat tgtgtggcga aacttacgtt ttgattacaa gaatgctatg      2160
     accggggcaa gaattaaatc gctttcaact ttgaagcgat atggcaggat tgtagacgaa      2220
     aacaattggg ttaattttca gaaaagtggt gataatgttg tgcgcaccag aaccacacat      2280
     gtgaatgaag tcacagattc acagaaagtc agcaaaaact cgaaaggttc gctcaaatta      2340
     gagaaatcgc agaaagagct acctacaaat aaatcgaaga atgaatcaga taagtctaaa      2400
     ctggagggag gaaagaaaca tacacaacaa aacacgggtt ggaattgcat ggagggatcg      2460
     actggtagtc ctatgcaaca actcgtcgat caatacaagc gtccagctat aggtgtgtgc      2520
     tacaatattg cagaaaacag ggtcatcatt acggtgagtg ctcagatgat cgacgaaagt      2580
     tttgtcgtat ctgtggcttt cctgatgtac tcacaaaaac atgccctttt tgcgcaaaaa      2640
     acgcggagag ttcggcttag aggaggaagc cggagaaatc tctgaaattc ctcctatcct      2700
     agacaacatt gaagaatctt tgctgcagaa cggctttgag ccagtaacag ctgaagatta      2760
     tgatagcgac cattcgattg aagaaatcct agttaaggtc aacggagacg cacgaccttt      2820
     tgtaaaagta accgttctcg ggaaggaaat tcttggactt cttgatagtg gtgctcaacg      2880
     cactgtactc ggtataggtg ctaagaaatt agtaaaagag ctcaaattaa aaatttatcc      2940
     ctcggatgtg aatattaaaa ctgcctcagg tgccgaaatt gaaattgaag ggtacgtgaa      3000
     cttacccata actttcaata acgagtgcca catcattcga gctttgattg ctccaaaatt      3060
     gacccgccga ttaattctgg gttacgatga tttttggaaa gctttcaagc ttaagccatc      3120
     agttttgaac gaggcagagc tttttgagct ctgcacagta gaggaagaaa aacaggatga      3180
     aaggaaaatg ggagacgagt tgagtgaaac tgaaagaaaa atgctggaag aagtgaaggg      3240
     attatttaaa cgatcaacgg agggggaagt gctcgaaacc actccgttaa tttcgcacaa      3300
     aattgagttc aaggaggagt ttattgatgc tccaccaatc cgaattaatc cctatcctac      3360
     ctcgccagaa atgcaggtga aaataaataa tgaactggac aagatgctta cccaaggggt      3420
     aatcgaaaaa tgtaaaagcg attgggctct aagtacggta cctgtaatca agcctacagg      3480
     tgaggtacga ttatgtttag atgctcgtcg tttgaacgaa cgaacaaaac gagacgccta      3540
     tcctctcccg caccaggaca gaatactgag taggttgggg tcttgcaaat ttttgtcaac      3600
     gattgacctt acgaaagcct ttctgcaaat accgctagat ccctactcac gaaagtatac      3660
     ggccttctcg gtgctaggga gaggattgtt ccaattcacc agattgccat ttggactcat      3720
     caatagtccg gctacactgt ccaggctaat ggatgaggtt cttggctatg gtgaattgga      3780
     accgggtgtt ttcgtttacc tcgacgatat agtcgtggtg agcgaaacat ttgaggcaca      3840
     tttgaaaagc ttgcgagagg ttgctgagcg cttgaaaaga gcgaatctct cagtaaacat      3900
     ggacaaatca aagttttgtc taacagaact cccatactta ggctacctac tctcaattga      3960
     aggtctcagg ccgaatccgg agcggatcga agcgataata aattatgaga ggcctaattc      4020
     aattcgttcg cttcgtagat ttttgggaat ggccaattac tacaggcgct tcattcctct      4080
     atttagcgaa tacacagcac cgttaaccaa cctgcttcgg aaaaaggcaa aatctatcag      4140
     atggaatgac gacgctgaag aagcttttgc caggattaaa gaatgtttga tcactgcgcc      4200
     agttttaagc agcccagatt tcaacttgcc gtttgtaata caatctgacg caagcgactg      4260
     cgccatagcg gctgttttaa cgcaagaaca gtcagaagga gagaaaatca tagcatactt      4320
     ttcacagaag cttacccctg cccagcaatc atatgctgct tctgaaaagg aagggcttgc      4380
     ggtactttct gcaatagaaa agtttagacc atatattgat ggcacgcact tcactgttgt      4440
     gacagatgct tcggccttaa ctcatattat gagaggcaaa tggagaactt cgtcaaggct      4500
     tagtcgctgg agcatacagc tccaagggta tgacatggat attcgtcacc gccgtggaag      4560
     ggataacata gtacccgatg ctctatctcg agcggtggaa gttatagagg tggacgacaa      4620
     atggtactct gaattgctag agaaagtaca aactaaccca gatgagcata tggattttaa      4680
     agcagagaat gggaaactct ttaaatatgt tccctctaaa accgaatgtc tagattatgt      4740
     atttgagtgg aagctttgtg tgcccgaagg ttctcgtgag agaattctcc gagcggaaca      4800
     cgatagtgct tttcatgtag gatacgacaa attactcgac aaagtgagat taaaatactt      4860
     ctggccccga atggcttcaa ccgttcggaa atttgtcgac agatgtgaga tctgtaaaat      4920
     gtgtaagcct tgtagtacct ctcagcaccc agagatggga aagcaaagaa ttacaagcaa      4980
     accatttcag atcttggcca tagacttcat ccamtcactg ccgagaagta agagcggaaa      5040
     cactcatctc cttgtgttgt tggatttata ctcaaaatgg tctttactct tcccagttaa      5100
     gaagattagc tcgagcgtag tcacaaagat tatagaggag cattggttcc gcaggtactc      5160
     agtacccgaa atcttaatta gtgacaacgc tagctgcttc cttagcaaag atttcaaaga      5220
     ttttttgggt cgctacgggg ttgtgcactg ggccaatgcc cgacaccata gccaggccaa      5280
     ccctgtagag agattgaacc gaacaattca ttcttgtatc cggacttacg tcaagtccga      5340
     tcaaaagact tgggatacaa agatatccga agtagaacat accttgaaca acaccattca      5400
     cacatcaacc ggttttacgc cataccgtat cttattcgga catgaaattg tgtckcgagg      5460
     cgatgaccac caaattgacg ttgtcacgaa agatctctca gagattgaga ggcaagagca      5520
     gagactcaga gtagataagg acgtttatga cacagttttg aaaaatctga gaaaagctca      5580
     cgagcgaagc accaataatt acaatttgcg ttttcgtaaa ccggccccaa tttacagaat      5640
     cggccagaaa gtttatcgta ggagctttac tcaatcttct gcaggggata atttcaatgc      5700
     gaagctaggc cctgcataca taccatkcaa aatcatwgct aakcgtggta cgagttctta      5760
     tgagctcgag gatgagtcmg ggaagaactt aggwatattt tcagcggcag atctgaagcc      5820
     aggggtccca kacwgttgaa agagggtacc actgtttaaa ttgataawta ctagattagg      5880
     catacacttt aacttcggaa ttaagtattt acaactagaw taacgtaggt aaatagatag      5940
     agccacagtc aaagtcacag tcgaagtcgc agcaagagtg agcaaatgat gcacaatggt      6000
     gtcgtcagga gtttgatcag gacacgcagk taaacaacca acacattttc ctttctctag      6060
     tttcgcaata gattatcatg tttcgtagac cgtaattagc gtcattggaa taacaccgac      6120
     aaatgactaa aacttcgcaa tgcccatttc caatagtcgc gcagcagaat cttttcagaa      6180
     ctagttcaat ctgcgttacg ttcctagaaa atgmcaatwt tgctatccac cacaccaaag      6240
     tacattgaac caagcgatca ctataaagaa gcaagttgcc gtataaattg aaaaaatagc      6300
     caagaaaamt acacgtccat ccgtcagctc tgaccaagca cgattgaata acagcttcat      6360
     atgagaaact cgccaagtcg aagattttka ttcttttcct ctgagcacac tgagtgggct      6420
     gagatccctg ggagaagtaa gatctattaa acgattcgat taaatgtaaa tcgcccatak      6480
     actgcacata tgagkatgaa gtgcaactca agaatttggt gttttagcag acagatgctc      6540
     attatttckw aagtcgagtt ggctcgaaga taaatatccc aaacctgggg gtagacaatt      6600
     cgaagatttg taaatagaaa aataaatcaa aaattgcatt tccaatttat ttttagagga      6660
     acggtagggt ag                                                          6672
//
ID   Gypsy-411_AA-LTR repbase;    DNA;    INV; 1289 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-411_;
KW   Gypsy-411_AA-I; Gypsy-411_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1289
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1289
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2108-2108 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1289 BP; 380 A; 327 C; 285 G; 297 T; 0 other;
     tgttacagtt aaggtccttt accctatgag agaggcacta gttggtagag aaggtgagcg        60
     ccccaagcga gtacccaaca ctatgaaaca gcgaacatct ctcatactgc tgttcgtcaa       120
     gaactcttag agagaaacaa tctagattac tattgagatc gtaaattgat tgtgattata       180
     ttattgttct caaaaatagt tcagattatg cttaatccac tgtacccaaa aatatgttta       240
     gctattccaa accatgtata tgtatttaag atagaagcct ttgattaaga cactcaatct       300
     ctagttaaag aaacggccaa attgaatgca ccaaaattat agtacaccca cttgacatac       360
     acttaagcta cacacatctg gatcggggaa taaaaggaaa atgggcaaat cgggatcaag       420
     aaagggaaag aaaagggcat tttctggaag aaagggaaaa gaggaggttt gctaccggtc       480
     cgaatccaca tggtagatct tttccaccca aaccgccaag gtgttaacat cggtagatcc       540
     gccttataag tgacattttt tatacgttgt ataatagcaa ataggctaaa gactgtgagt       600
     cagtaaacct ttaaagtagt gtccgcaagt ttaaagtgga aaagaagtcg attagtgtca       660
     accagaagaa tcaggtatga gaattagaat gtggattcgg tagcaaaacc ctatacgaca       720
     ccctctttcc ggcttccacg tgtaggaccc attgggatta attcctcgac cgccttcgcc       780
     acccaaggcc gccgctgggt tcccagtgtt tgcgattgcc cgtgaaccgg ggcaaacacg       840
     tgccaccagc ccaccttgga acggctaacc attccaacca ttaaggatcg ggcgaccacc       900
     cagcaaccgc tcacctaccc gcctgtgagt gcccagaatc gtgccccgca tcatcgttgc       960
     tgagaagccc ggtgcgcgtc tccgaccgca tgccccatcg tggttgagaa cgccacccac      1020
     cgccgtcacc aagccagtca ccgtccgtca gctcccgtca tcaccgcccg atccccgccc      1080
     accatcgctt tccccaaacg atccacgccg gccggccccc ccatacacac acacaagact      1140
     cttgtaagta gtagtagtaa agcaataaat agagcagtgt agtagagtag gagacctcgt      1200
     gttttgcctt cttgattggt tttcccacgt tcatgccgac cctgagagaa agagagtgag      1260
     tatctcgaga gggagtcgag agggtaaca                                        1289
//
ID   Gypsy-412_AA-I repbase;    DNA;    INV; 6625 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-412_;
KW   Gypsy-412_AA-I; Gypsy-412_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6625
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6625
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2095-2095 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6625 BP; 2665 A; 1144 C; 931 G; 1878 T; 7 other;
     ggcgcccgaa tagggaccag cgcgagttcg gttaatagtg tcgcggcgaa acagcatagt        60
     gaactttttt ccgaaacaca actttaccgc atcagcagcc gtgaagcaga gcaccttagt       120
     caccgccggc agctaatcac tcgacgacgg acaaaaggga acctgccact tcactgggag       180
     agttggagat cgtgcctggt cctgaatcat cattggagtc ctgccgacac aggaatagga       240
     cccgcattaa agacaaggat actccctgat agaagaggag tacttgcact ctcgacgata       300
     cagtacgaga gttatgataa agttattttt gtaagtatta ttaacaaaat ttatttttca       360
     gttcagaaag aaaaaagtga atatacaagt gtagtgtagt tataagcagt gtataataaa       420
     taatcattaa tagccagtga tttaattttc ataaatttcc aatctctaat taccaaatta       480
     aaattgatca attaatcgat aaattaaaaa gcttgcattt aaaagagacg aaaatgaatg       540
     atcaacaata taatgattta atgagaagaa ttaatgcaat tgagagtgcg attaaacaac       600
     cagaatcact tgattattct gatccccctc ttatccttac aaacgaaaat aatacaccca       660
     ttgatcctag taccatagaa acgattccag atttagtgaa aaatctatca gaattttctg       720
     gtaatccaga agagttagga tgttggcttg tagatgctga aggtctaata tcgttatata       780
     aaccaagaca aactagttca gttaaagaaa aaaataaatt tcatgtaata tgcaaagcta       840
     tcagaaggaa aattaaaggt gaagctaaca acgcattggt agcccacaat gtcaatatca       900
     attggctcat gattaaacaa accctccaaa cttactatgg tgaaaaacgt gatttaacga       960
     ccttagatca tcagttgatg tcatgtgctc aacatggaca agcaattgat ttatattatg      1020
     atcagataaa taaacttttg tcagctatag ccaatcacct acgcaccgat gatagatatc      1080
     aacatccaga agctttaaca gcaatgttac aagcttacaa tgataaagca atagatgcat      1140
     ttattagagg actcgacgga gatttaggaa aatttttaag aaattacaaa ccgacgtctt      1200
     tagcacaggc atatgcatat tgcttatcgt ttcacaatgt tgaatacaga aaaactttta      1260
     ttaaatctaa acttccagaa aatttgcaaa taacgaaacc aatacaacat aattttccaa      1320
     aattacctcc caaacckata cgaacaaatc aaccagcgaa tatatatcac aatccacagc      1380
     ctaaatatta tcaaaatcat caattcatac ccagacaaca ttataatcct aatccttcat      1440
     ttattcccaa accgcaatat aatccaaacc ctccttttat tccacgacat aatcaaaatt      1500
     tgccatttgt tgcgaaacct caatattcat caaatccacc acctgtagta aagcaaccag      1560
     ttttacaacc tcaattcaat aaacctgaac cgatggatat agatccgtcg ataagatcaa      1620
     acatggtcaa ttattcaaat agaccagcaa aaaggatgag aaattttaat atcgaaacag      1680
     ttcaaccacc atctaatgta gatccagatg tccaacaata tttcgaacaa attccctttt      1740
     tagcagatga agaatattct gatggaacat catttaacag atattcagaa aacgttgaat      1800
     atcaaaatca agaatctgat gaaattaatg aagaatcagc agaattaaat tttttagaat      1860
     aaattcatca ttaccatatt tcttgcatta tggtaatgga aaattgaaaa accctcttaa      1920
     aattttaatt gtacagggtc taataaaaat tacatccacc caaaatttac aaatatagct      1980
     cataaattgg ataaaccatt tcatgtttct tcagtaggag gtgatttaaa aatcgaatat      2040
     tattctagtg gtaaaatctt ttcaccatat tcggacaaaa acatcaaatt ctatcatatg      2100
     tctaaattga aaacgtttga tgctataata ggacatgatt ctttaaaaga attacatgca      2160
     gtaatagata cagcaaacgg aaatttaata atagattctc aattcaaaat tcctatatta      2220
     caacatcatt tacaagaaat taataaaatt caaatacgag atgatcatat gacacaatca      2280
     gagaagcaaa taatgttgaa actacttaac gattatcaag acttatttca acctgcgaat      2340
     gcaaaattaa cttacacaac caaaataaca gctgatatca gaactacaga taatgatccc      2400
     atttattcaa aaacatatcc atacccacaa gctcttaaaa gcgaagtttg caaacaaatt      2460
     gataaaatgt tgaatgatgg aataattcgg ccatcccggt caccatacaa ttctcctgtw      2520
     tgggtagttc caaagaagct tgatgcttca ggagawaaaa aatacagatt agtaatagat      2580
     tatcgaaaat tgaatcaaaa aaccattagt gatagatatc caattccgga tacttctact      2640
     attttagcca accttggcaa aatgaaatat tttacaacat tagatttagc atctggtttt      2700
     caccagattc ctatgaacaa taaagatatt gagaaaactg cattttcagt gaataatgga      2760
     aaattcgaat ttgtacgttt acccttcggt ttgaaaaatg ctccagccat atttcaacga      2820
     gttatggatg acgtccttca tgaacatatt ggaaaaatat gttatgtcta tatagatgac      2880
     ataatcatat ttggagaaac tttcgaagaa cacatgaaaa atttaaaaac tattttggaa      2940
     acattgcgca aagcgaattt taaaattcaa cctgataaat cggaatggtt gaaatctgaa      3000
     gttgaatttc ttggatttat tgtttcaaaa aatggattaa aaccaaactt aaaaaaagtt      3060
     gaaagtattc aaaagtatcc tgaaccaacc aatctgaaag aattacgagc atttcttgga      3120
     ttatccggat attatagaag atttgttcaa aattatgcca aaattgctaa accgttaaca      3180
     aaatttttga aaggagaaaa tggacataaa caaattccga aatctgaatc aaaaaatttt      3240
     aaaattgccc tagattttga agggaagaaa gcctttaaat tattaaaaca aatattatca      3300
     tcagaagatg tattggcgtt tcctgatttt cgaaaacctt ttttactcac aaccgatgca      3360
     tcaaataagg caattggtgc tgtgttgtca caaaatttca atgatggaga aagaccaatt      3420
     acttttattt caaagactct atctagtaca gaagagaatt atgcaaccaa tgaaaaagag      3480
     atgcttgcta tagtttgggc attgcatact cttagaaatt ttatatatgg tcataaaata      3540
     ataatttaca ctgaccatca acccttaaca tacacgattt cccctaaaaa taataatgcc      3600
     aaattaaaaa gatggaaggc ttttattgaa gagcacgacc atgaaattca ttataaacct      3660
     ggcaaagcta atgttgtagc tgacgcctta tcccgtattc aaattaattc tttaactgcg      3720
     actcaacact cagctgaatg tgatgacagt tcttttatac catccacgga agccccagta      3780
     aatgttttta aaaatcaatt aatttttaaa attggaaata gatctagtta tggtttagtt      3840
     gtaccatttg ataattacaa aagacatatt ttcatggaaa ctagattttc aaaagacttt      3900
     ttaaagcaac aactcaagaa attcttgaat ccaaatgttt tgaacggaat ttatacagat      3960
     gaacctatta tgggtcaaat tcaagaaatt tttaaagaaa tatttaatcc aagattaatg      4020
     aaagtcagat tttcgcaaat caaagtccaa gatttgaata acaaagaaag gcagctagag      4080
     gaaataaaaa agattcatca gttcgctcat akaaatgcaa aagaaaatgc agaacaactt      4140
     ttaaaatatt attactttcc aaaaatgaca aaaataattg aacaatttgt aaacacgtgt      4200
     gatatatgta aaacagaaaa gtatcaaaga aatccacaga aatttattcc atttaaaaca      4260
     ccaattccaa cttttccatc tcaaataatt cacatagata tttttacata tgatcaagat      4320
     aatttatttt tgacctcaat agataaattt tcaaaatatt taaaatataa agcaattgaa      4380
     agtaaatcac ttcttgatat agaagacgcc ttgttagatt tgatacacga atggaatata      4440
     ccaaaaataa ttatcatgga caatgaaagt tcttttaact caaatattat tgaacaacgt      4500
     ttaagagatt tgaatatwga aatttataaa actcccataa acagatcaga gacgaatggc      4560
     caaattgaac gttgtcactc gactataaga gaaatagcaa gatgtttaaa aaaacagaca      4620
     cctgaaattg acataccaca attaattcgt tcagcagttt acaaatataa taacacgata      4680
     cacagttttg ttaaaaatac gccacacaac atttatattg gtgaaattaa ccaaaatctt      4740
     aatgaagagg aaataactag aagaaaaaca aaaagtcgtg aaaaagtagt tgagttgtac      4800
     caaaagaaaa atgcgaaaat tcaagagcaa aactatccag tatttgaacc aggatcatgt      4860
     gtttttgaaa aaacctataa tatttcaaaa cgaaaaagta gatacaaaaa aataacagtt      4920
     aaggaaaatt ttgatacatt tattatagat acaaacaaca gaaaaataca taaaatgaat      4980
     ttgagaaaaa aataactaat tttwtatttt ttcagcgtta tactatgttc aatgatgata      5040
     gctcaaggac aaatacaaat acatgatttg aacaaaaacc cattagcaat aataccttta      5100
     ggcaaagcca aaatcaaaac agggtattta agaataatac aaccaataag cttgatacag      5160
     ttacatgata ttattcaaaa atttgatgat ttgwtcaaga aaaatgttta taataatcaa      5220
     ctctatagac tattggaaaa tagaaataac ctattgcatc aaacatattt aaaaattatg      5280
     ccttcatcca accgagccaa acgttgggat actattggaa ccattcttaa atggattgcg      5340
     ggaacccctg atgccgacga tctcatcatt atcaacaaaa caatgaacgc cttaatagac      5400
     aacaataatc aacagactct catcaatgaa gctattaact cccagatcaa acacctaaat      5460
     caagtcacaa atgatttatt aaatttggat tataaatcaa aacaacaaca tgtcatcgaa      5520
     attaatctcc ttacaattct actcaatttg aatgccgctc aacaccagtt ggaagtaatc      5580
     gaagatgcta ttatacttgc aaagaacgga attcctagta gtcaaattat gtctgtaaaa      5640
     gactacttga aaattaaacg atttttggaa aaccagaaca tgcctataaa gtcatttgaa      5700
     gacttactca ccagatcaac tacacaaatt gccatgaata atacacacgt aatgtatatg      5760
     ctgaaagttc cacaattttc aaatgaaatc tacagctacg aatacataag ccctctagtt      5820
     cacaatggaa gcagaattta tatttcaaca aatcacataa tcaacaataa ttcacatata      5880
     tttgaattat caaaacaatg ccaagaagac gacgaatact attactgtga atccaaaata      5940
     ttacaaccca caactccgtg catttataat ttgatacaac tacgtcatgc aaactgtctt      6000
     tatgaaaaag tatattcatc cggaatcatc actcgaatca atgatgccac aattcttctg      6060
     aacaatgtta atataacatt agaatccaat tgcagcaagc ttaatcaacg cctggaagga      6120
     tcatacctaa ttcattttga aaaatgtgaa gtaagtattg ataacaatcg atatacaaat      6180
     atcatcatgc aaaccccaag attatcattc agaccaacaa ctggaataat ggtaaacgaa      6240
     gaaaacctca tagacattcc tccacatgaa tacttagcaa atcttacgtt gaagcataga      6300
     tcaatgctca atcatgtcta catacaaaat aattcattac aatggaaact tcacatattt      6360
     ggaacaatca gtctttcaac tttatttcta atagtaacgg caattacaac atatttcatc      6420
     atcatgagaa aacgatccga gaaaccacaa attgaaatca acctgcaaga gcaagtgaaa      6480
     gcatcagcac cagaagataa tcaactgaac attcaacacg ctaatgtcaa caaggagaga      6540
     cttcaactaa taaacaatta tttatgtatg ccaacagcag atcgacccat aagactttga      6600
     ggacaaagtc ttttaaaggc ggagg                                            6625
//
ID   Gypsy-412_AA-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-412_;
KW   Gypsy-412_AA-I; Gypsy-412_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-284
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-284
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2109-2109 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 284 BP; 103 A; 65 C; 37 G; 78 T; 1 other;
     agttagcacc accctagaaa ccacctgcac ttgcatcaac ccaacaccat aacatcaaca        60
     ttcaccggcc tcgcatccaa gaaawagata agagtcaagc cataacacaa ttggaatgtg       120
     tataaacata aacatcaatt attactcaat aaaagggcaa gcagcccaac cttctcagtt       180
     ctgttctgtt agatagtcca aagtaatcgg ttgttaagtt tatcatccga aaccgcttat       240
     aattagtttt taaaaattta gttctacgta ataatttatt aact                        284
//
ID   Gypsy-413_AA-I repbase;    DNA;    INV; 6524 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-413_;
KW   Gypsy-413_AA-I; Gypsy-413_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6524
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6524
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2096-2096 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6524 BP; 2011 A; 1339 C; 1436 G; 1725 T; 13 other;
     ttttggcgac caacaaaaaa atagttccta tttttgaggt tagcgaggga ggaaaacgat        60
     agcgataatc gtttaccgcc ggtgattctg gtaattgatt ccaatcggcc aatgttgaat       120
     aactgatgta cattactttg cacaaaagtt gaacgtgatt aggattttta acaaattttt       180
     cgattaatgc acttgtggac tcgtggatcc aaggtgtaaa ccaattctag gcattcataa       240
     acaatttttc cttcgaatca ttcgatcatc atcatatatc gcaaacaaag cgagagttct       300
     tctttaggtt atcaaattgg atgaaaacaa cactgtttgg caagtacgaa atttattttc       360
     gtaggcactc tctctagcac ttttaacaaa ttttgttcgg ttaacactgc acgatggatc       420
     acttcatgtt ccaatatttt ggaatgaacg ttgctcatct cctcgacgat gagctgtcgc       480
     atgaattgca aatccgtcgg atcgaagagc atggcgagcc tcgatctgta cttgagcgaa       540
     aatgtagggc tgagctgaaa agagaaggat caggaaaaca ttcggaaatt gattatgagc       600
     catcaggcaa aacggtaatt gaagagttgg aaaaatgcga tacacaggtt caagagatca       660
     aacaagcgtt agataccaga gtgtacaaaa aagctcccga tcaaaagcac aaatcgagat       720
     tactacatta tttgttccga ttgctacgag caaaagctca gacaacggac gaatccgagc       780
     ttaactctat ttcagagtta gcaggagaat gtgtgaggtt gctcaataca ttttattcaa       840
     ttgcttctcc atatcctgag ataaggagag cagaaattgc taatgttaac gacagtttgc       900
     gtaagatgcg gcatgtcttc caggaagatg atagagcaaa tgctgttact gtcgaccaag       960
     caacaaatcc cgaaatgggc gatgttgaag aagataacat tcgtttggac ggattgtttg      1020
     ctccaacaga cgaaaatgat gacgacaaac ttgatgaagc tgtaggcggc acatccgcta      1080
     atgaagttga gattctcaga gctgagaatt ctcagctaaa atccatgtta gaccaagtgc      1140
     taactagaat ggaagctcta gaaacacagc taccgaatac gaacaaatcc cagcagcagt      1200
     ttaagaacag cacgggagta ggtgaacccg aaaattcgga agatcctgag gaatgtgagt      1260
     tggtaaatgc aaccaaaccg aagttctcgt ataaagagtt catggattgg ctggttaagg      1320
     atcaaaatct gttgcaaggt gttccaagaa cagatgatca agccccgcat aatccaagta      1380
     atgttgtact tacacgacag ccagattatg tagcaggttc ttctggtcgt agtaatccag      1440
     cacaggatgg ttctggcagc cgattgtcaa tccacaagtg gaaaattcac tatgatggct      1500
     ccgacaatgg ccgccgatta atcgaatttc tacgcgaagt agagttcact gcccgatcag      1560
     aaggattctc gaaaccggag ttgtacaatt ctgcgtatca cttattggtt ggcaaagcgc      1620
     gatgttggta catggaggtc aatgcacata atgagctccg tacctgggat aacctcgtcg      1680
     gtgagctaaa acgagagttc ctgccacccg atatcgatta tcaacacgag agacaagctc      1740
     atttacgaaa gcaaggaacg agagagcgtt tccaggatta ctacctggaa atgactcgta      1800
     tctttcggaa catgactgta cctctcgatg aaacgaaaaa gtttcaaata ctatttcgca      1860
     atcttcgctc tgagtacaag agtgcaatgt tagcagccaa catcaacact attgcaagga      1920
     tgagagagtt tggaaagaat ttcgactcga tcaactggca gtggtactca aggaacgaaa      1980
     aagacagtag tagggtatat cgatcgacag agagacaggt caatgagata ggagagggaa      2040
     aaaagctacc ttcgactagc aatcgaccgt ggaaaaatga aaatttcaaa aaggaatttt      2100
     cccagctcga atcgacccca aaaccacaag aatcaatctt ttcagaaccc caagccgggt      2160
     caacataact cgaatcctaa gaatgcggaa tccaaacagg aacaatcttc gaaaccagat      2220
     tatcaaaagc caggaccaag caagaacttc aatcctatgg agaagattct gaaagcttat      2280
     gttccgttga aacgaggcac ttgtttcaat tgccataatt ttgggcataa tgctacacaa      2340
     tgtacccagg aaaaacacac tttctgtgaa tcctgtggtt ttccaggttt cgaacaaaaa      2400
     gattgtccat tttgcgcttc aaaaaacacg gacaagactg ctcagtgagg caaagcagtc      2460
     tgagtacaca gtctccaagt cctcaaaata acgaaattag ttcgattaat tctattctga      2520
     cacagctggg ttatcactcg gtggcttcga cttcacagtg cgaggaggtt aacacgatat      2580
     ttctccaccc acatggggac aacaggccat tcgtgagaat tgagctgcta ggaataaaat      2640
     tagttgcact tttagacagt ggaacaaaca gaaacattct ggggaaaggt tccgaacgac      2700
     tagtgtccaa tctgaacctt aactattcac catctgattt gaccttaata accgctgaag      2760
     ggcacccagt gcaggtttcg ggtgaaatat ccgttccggt tttgttcaac ggagttacaa      2820
     gaatcgtctc cttcgtagtt gcaccttctt tgaagcgtca atgctatctg gggatgtcgt      2880
     tttgggacca atttggtatc tacccatctc tgagagattc gtttatcgaa acgatcgacg      2940
     attcggaaga gttacccgaa gatgagatgt ctttgacccc tgaagagcta aacgagttag      3000
     atgaagtaaa agcactgttt ctggtacctg aaccgggcaa tataggatgt actcgcattc      3060
     tcacacatac catcgaaatc agggacgaat gtcgtgagct ccctccgatt cgcaaaaacc      3120
     catacccatg gagccctgaa gtacaacgga aaatccactc agcgctggac agtatgatta      3180
     aagacgatat tgttgaacga tcttgctccg attggtcgca gccagttgta ccagttgcca      3240
     agcgaggcac tgatgcagtt cgactctgtt tggatgcgag gaagttgaat gagcgcacca      3300
     aacgggacgc atatccactt ccccatcaaa cacgcattct gagtcgattg gggtcgttca      3360
     aatatctctc cacgatagat ttgagccaag cattcttaca aattccactg tgcgctcaat      3420
     ctcgtcaata cacagcattc tctatccctg gtaggggatt atatcaattt aagcggttac      3480
     cgttcggact tgcgaacagt ccggcgacgc ttagcaaatt aatggaccga gtgttgggat      3540
     ttggagaatt agagcccaac atttttgttt acttggacga tattgttgtg gcgtcgaaaa      3600
     cgtacaaaga gcatatcgct catttgaaag agttagcgag gagattacgg gaggcaaatt      3660
     tgcgcataaa catcaccaaa tcgaagtttt gcgtaccgga attgccttat ttgggctata      3720
     ttttatcaaa agatggtctg aggcccaatc cggatcgcgt acatgcgatc gtcgcgtatg      3780
     aggtgcccag atcaattcgt gcactccgca gatttctcgg tatggctaat tactaccgac      3840
     gattcattga ccagttcagt gcacttacgg tacctttgac taatttactg aaaagtaaac      3900
     caaagaaggt agaatggaac caagaagccg atcaggcatt ccgggcaatt aaggaaaaac      3960
     tcataagcgc acccgtaatg gccaatccta attttaatct cccctttacc gtccagacag      4020
     atgcgagtga ccacgccatc gctggcgtcc ttactcagat ccaaaacggg caagaaaaag      4080
     taatcgcatt ccactctgaa aaactaaagg gcgctgaatt aaattatcac gccgcggaaa      4140
     aggagggatt ggcggctcta cgatgcatcg acaaattccg atgttacatc gagggaaccc      4200
     aattcactct agtaaccgat tcatcagcac tcacattcat aatgcgttcc aaatggcgaa      4260
     cgtcatctcg actatcgcga tggagcattg agttacagca acacaacatg gtactcaaac      4320
     atcgcaaggg cagagagaac attgtgcccg acgctttgtc gagatcgatg gaagtggcag      4380
     aattagatgc tagaatggat tggtattcga aactattcca ttcagtcaaa caagatcccg      4440
     aaagttacat agacttcaaa attgagggaa acaacctcta taaatatgta aattcacagt      4500
     cggatgtatt tgactacgcc ttcgactgga agctatgtat tcctgaacac atgcgttcag      4560
     aagtactggc taaagaacat gacgaatcat tccatgtagg ttttgagaag accgtggaca      4620
     aaattaagaa gcgctattac tggccacgca tgtcggctga aataaaacgt tatgttgcca      4680
     actgcgaaac atgcaagcgc ataaaacatt cgacaacctc agttgttcct gaaatgggta      4740
     atcaacgtgt cacgaccaag ccgtttcaaa ttctcacgct agactacatc caatctcttc      4800
     cacggagttc cagaggcaac tgccatcttc ttgtccttat ggatgttttt tcgaagtatt      4860
     gtctcctaac tccggtgcgc aagatttcgt cagggagtgt atgtgagata ttggaacagc      4920
     aatggttccg acggttgtct gtgcctgagt acctaatttc agacaacgca accactttcc      4980
     actctaaaga gtttcaggaa atgttggcta aatacgaaat acgacactgg gcgagtgcca      5040
     gacaccatag tcaggcaaac cccaccgaac gactgaatcg gactataaat gctatgattc      5100
     gtagctatgt gcgagacaac caaaaactgt gggacacaaa ggtctctgag atagagttcg      5160
     tccttaataa tagcattcac gcgacaacta aattcactcc atttagggtg attttcggtc      5220
     acgagatcgt gacgaaaggt tcagaacatc atcactcaag aaatgagaat gagttatctg      5280
     aagatgagag gatggagaga atgcagattg tgagtaaagc aatctacgat aaagtagtga      5340
     gtaatcttcg aaagggacac gaatgtacca agaagagata cgaccttagg cacaaacgat      5400
     acgctccgac tttcgatatc ggtcagaggg tattcaaacg aacttttcgt cagtcttcag      5460
     ctggcgatca tttcaacgcc aagctgggag aggtgtacga gccatgcact atcgtagcga      5520
     aaaagggtac ttgttcgtac gaggtcgctg acctcaacgg caaaagcctc ggtgtgtttt      5580
     cggcaggcga tttaaaagcc tagtgcatat gcatagtatg ttttatgttt agttctggtg      5640
     aaagttgtga ttatgtggat taggttttag taattgtggt catcgttaat aaggtgtttg      5700
     gagacccaat atcaacctgt tccgtcacgc cagcgagttt cagcagaaac ccactagaaa      5760
     tatcccggga tagatwgaag taagtggaaa tgttataatg ttagaggtac ckagaaatag      5820
     aaaattataa atgcacgaat attttgtgta gctctttaca ctatttgctc accagatcgt      5880
     cmaatgatat ttgatctggg caagtaaatt gatcaagcta cgcttgtgga tccgtgcgct      5940
     taatcatgag agwattctta taaccaaatg ttgatgacct tcaagggtca aaatgacaac      6000
     tcgaacccca ttwcttasca tagtgcaaat tttcatcmga tttgatttga agtcgttwag      6060
     gcagctacka aatttgacaa tgataagtta ccgaatkaat gatcgggccc ttttttcgac      6120
     acaaattgat atcactggtc attgtcgccg cggcaaagta gaagtagttt gctttacgac      6180
     gtctttcgaa ttggtgattc catttataat tcagaaagtc gcttcaataa aattcattca      6240
     macttcatac tgttagatta acggagatcg atctgaaatt ttatatgtag tggttwgcaa      6300
     tgcttattca tttgttacat tttcgagcat gagtcacaat ttcattacaa gtttatcgtt      6360
     attttgttaa atttttcctc tgttataact atttgtcata tttttgtgca acatttattt      6420
     accattgcca tattttggta caggtgcggt atggcgagag ttgttattta gttttcttaa      6480
     aattattaat ttcattaata atttttaccc gagcggkgcg gtag                       6524
//
ID   Gypsy-413_AA-LTR repbase;    DNA;    INV; 1060 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-413_;
KW   Gypsy-413_AA-I; Gypsy-413_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1060
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1060
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2110-2110 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1060 BP; 331 A; 234 C; 253 G; 242 T; 0 other;
     tgtgaccagt cgctttgcga tgtccacttt ttccttcgac tttcagtcat acttggggat        60
     ttaaattaat tcaagaggaa aaccaatgat taaaacttag ctagttagta gggatgttaa       120
     aattattaaa ataaaattat ataagaatac aactaaataa ttaaacctat aagaaaacat       180
     gcaattgata aaagaaccca tgcaagtctt atttagctag ataggaggac ggcacaacgg       240
     tcgaattaaa agaacacaaa acacagaaca caatttgtta aaacagacat acaacacaag       300
     acacccacaa accaccccac ggcgactaag tttggtagcc aatgcagttt ggcaatacca       360
     atcgaaaaaa aaggctattc gctggttccg agtgagcctg gtggacgata ctcgtccact       420
     tgctggagga ccctgaacga aggaacagct aattttccaa gtgtccaagt gtaaagacca       480
     gtggtgttaa accatccgaa aatctcaagc aaaggtggat cgattgtgcg aagcagtaat       540
     cgcgtgagac ggaggaacgg tctatccgca atttaaggaa gcagtccatc cgtagaaagt       600
     gacggtggtc aatattcaac cctattgtga ccacgtggat agtgaacgtc gtaacgcact       660
     ccggtcaacc cgatccatca accttccgag tatttggcgg tgcactgtga ccccgaaggc       720
     ctaggattcg gacggtatct acaggcaggc tagcagcgac ctggtggcta cgataatcac       780
     ggctgtcatc caggtgacgg tgaggaagcg gacgcgctgg taccattgag ctccaacgac       840
     gggccccgac acttacacca tacactaacc gtaagtaatt tgtgagcggt aggaagtagt       900
     tagggccata gggacgatag ggatcttttc gaataaaagc cgtcattcat ccaaacacgt       960
     cattggtttt cctcttcttg tgcgacctcg gcggaaagag ccgaccctga gtgggctggg      1020
     agtccttgtg actgagcggg cgtaacaaag gttagttaca                            1060
//
ID   Gypsy-414_AA-I repbase;    DNA;    INV; 7651 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-414_;
KW   Gypsy-414_AA-I; Gypsy-414_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7651
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7651
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7651 BP; 2372 A; 1615 C; 1708 G; 1956 T; 0 other;
     attggcgatc cgcgaaatac tcaaatattc gaaacttttt gagcttcgaa tatttccact        60
     tactagggga gactcacgat agcagctctc aaaagactat cgtgatcttc tttggggtct       120
     gcgtcgaaag tgttgttgga atagagggaa aggtctgttt gattagaaaa agaaatcaat       180
     tctcaagatt atttcgataa aacactctgt acatattgaa aattattcat ttattgttca       240
     tatatctgaa ttccaaaaca ctattgctta gcctcattta gtatatttaa tattgcaatc       300
     attatagtaa ttgaaatagc ttatagtatt ctagatcata aggtgtaaat atttgagagt       360
     taggattaga tcattcagtg aattaaaaat tagtgaattg cagttagagt attgacagtc       420
     gtaaacggat tgtttttggg tatttgtgaa ttttggttgg ggattgatac agtggtaaga       480
     tggctgaagg acagattgtt gaattaaggg aagagaacct aagtaagctc ttctatgata       540
     taagggttga tcacctgaat gaagatgagc tcaattttga actcgaaatt cgggacattg       600
     tgtttggtcg cgatgactca atgtcaagga aacgtcgagc actacgcgaa aaactaaaga       660
     ttgaaaagga tgaacaggat ggaggagaca ggattataaa aaggaaccca catgatgaat       720
     taatgatttg tgagatgaaa ctaagggagt ttgagaggag tttacaagga gcgacgaaag       780
     agttgcctcc gagatgccaa tctattttgc tgcatttagg aaaccgaata cgattgctta       840
     gatcatacgt tgatttggaa gcgaaagtga gagttgataa tattcagggt agaattttat       900
     cttacttaag caagtatttt tataataagc gtgatccaca aagtcattta agctcagaaa       960
     taggtattgc caatttgttc gaagagggtc ccccacaaaa cccaaacacg gacgcaaacg      1020
     cgggagtggc ttcagagatg actcagatta gtcaggaacg aacttattca ggaacgctag      1080
     cagaatcgga tattttaggt tctctacatc gtttaggatt acttgaattt ggagtgacag      1140
     atcctgacga agttagaaat gggttactga agctggaaaa tgaactctat acgttacgtc      1200
     aaagaaatgc aaatcagtcg gttttcacga attactcgat tccccataca ggaaatcttg      1260
     tacatactac ttatacagga accactcaaa aaaccaccct atctgggaac aactcacggg      1320
     ttaatccgac ccaattaggt gaaccggtct caaggccgca gtgggccaat gcgagccata      1380
     caccgagttt ttcttcaatt ttcaatcctt cagatttggt ttcttcgagt tctcatcgct      1440
     cattcacagc attcccagta atgagcacga tgacgatccc aaccttatct aacgctcaac      1500
     caagggttgc atcgtcgttt ggtgcaaatt tgggttatcg ttggacacca tcaaccacaa      1560
     atgtttcacc tctctcggtt aaccaacccg ggagtagaac caccggtttt gatcagcaag      1620
     ggtaccgcac atatcctaca ggcgacgaat ggaaactgat gcccatagct gcatccaccg      1680
     gttttacaaa cccgtcaatt caaatcccac aagtagatcc tttgcgaaac tccgatgggc      1740
     atttgggacc cgacggccca actgcacctt cacggagaca agcagcggta ccgaatgtta      1800
     cttcctaccc tggtggtatg tatggacaga atcaaacgag tcaaaatttt caaaatccat      1860
     cggttggatc aacattggga gttcattcga tgttatgtcc acccaccagc caggtggttc      1920
     cagctggcaa ctcattccat aagtcattac cggtttccaa atggaaattg gaaaagtacg      1980
     ctgggacaga ccaagggtta aaactcaatg aatttttata cctggtgtct cagttggcct      2040
     tgtctgagca cgtgtctgag accgagctct ttgattcggc cttccacctt ttcacagggc      2100
     cggctttgaa ttggtatatg tccaataggt cggcgggaag gttggtgaac tggacgcatt      2160
     tggtcctgga gctccgaaga acctttgccc atccggaatt ggattccttg gtgcgtgccc      2220
     gaatctacca gaggaggcaa cagcgcaatg aaaccttcca ggactttttc tatgacatgg      2280
     acagtatgtt tcgctcgatg atgaatccga tgagtgatgt ggaaagactg gatgttcttc      2340
     gaagaaacat gaggactgat tataaaaaag ccctgctatg gaagcctatc gctaacctag      2400
     ccgaactact agatgcggga catcaaatag atgcttcgaa tttttcactg tttgcaaaag      2460
     tgttcggtgc cgacaaatcg gttaatgttg tttcctcagg tccaatcaac cgtgagggac      2520
     acaaaaattt tacaagaccc cagtttaatt ccaaaccaca agacaaaaac aacaataaaa      2580
     ataaagaaag cccatcgata aaaaaggatg caaataataa ggctgaatcc catcctacgt      2640
     catcacaaga taaacacact aatcgagagg atcctgggga aggtacatca aaacccccta      2700
     gaaccttgag ttttttagtt gacggttata aaccaccccg aggtaatgaa tgcttgtttt      2760
     gccgacagac aaaccacaat ttagaacaat gtcgcaatta caaagggttg atgtgtttgg      2820
     tttgtggctt caaagggttt gaaacccagt attgtccgta ttgcaaaaaa aacgggctcc      2880
     agacggtcga aagtcgtcga ccgtcgaact cgaaccacca cgcataaact cttttcccgt      2940
     aggcataact ccttcagaaa tgtgggagcc agttccagag gaggcctaca gtttgggttt      3000
     attagagtcc ctcacaattt ccctcgcaga atatcaagat aacaggccct acgcagccat      3060
     aaagatatat ggcattccag aaaagggtct actagattcc ggtagtcaac ttaccctaat      3120
     tagcgaggaa atttaccaca aactgcctgg tattaagctt cagcctttga ctcaaccaat      3180
     tagtattcga tcagctaacg gtaccgaatt gaggaccctt ggaaaactat acattccttt      3240
     caacttccaa ggagtgataa aaattgtacc cacggtggta gtacaacggt tgtccgtaaa      3300
     ctgcatacta gggatggact tttggcgcag atataaaatt tggcccactg tgcaaaactg      3360
     ctcgttggta acatgttcag aggagccacc caagtttcca ccgtcctctc ccctttcgga      3420
     ccaagagaaa gaacaactag aagatactaa actacttttt aagggtgcga acccagaagg      3480
     gctctcgatt acaccactga ccgaacacag aatcgagatt gccgaagagt ggaaaaagaa      3540
     gccaccagtt cgacaatacc cctatagcat gtcaccaaaa gtgcaacaaa aggttgccgc      3600
     tgagcttgaa cggatgctaa agataggcat tatagaacga gctcattctg actggtcttc      3660
     aaacgtcgta ccggttatca aacccagcgg aaaggtgcgc ctctgccttg acgcgcgaaa      3720
     gataaacgaa cgaaccgtac gggatgccta ccccttgcct caccctggac gaatattagg      3780
     tcagctacct agagctcggt acttaagtac catagattta acagaagcct ttctgcaaat      3840
     accgttagaa aaaagctcac gcaggtacac cgccttcagc gtccagggca aggggatgtt      3900
     ccaattcacc aggttgccat ttgggttggt gaatagcccg gcttcattgt ctcggttaat      3960
     ggatcgagtt ttgggacacg gtgaattgga accgaacgtc ttcgtatacc ttgacgatat      4020
     cgtcattgtt acggagacgt tcgaggaaca cgtacggtta cttcgtgaag tcgcacgacg      4080
     tcttgcagag gccaaccttt caataaacct ggagaaatca aaatttggcg ttagtgagtt      4140
     gccattccta gggttcttgc tttcgacgga aggattacgg gccaatccgg aaaaggtcag      4200
     ggccatagtg gaatacgaga gacctaccac tattacgaaa ctacgtcgct tcctaggaat      4260
     ggccaactat tatcgccgat ttattgatga cttcagtggc attacagctc ctctctccga      4320
     cctcctaaag acgaaatcaa agagaatagg ttggaatgag gctgcagagg aagctttttg      4380
     caaaattaaa gaaaaattga tttcggcgcc catattaacc ccacctgatt ttactcagga      4440
     gttcaccatc caaaccgacg ctagtgacgt cgccgtggcc ggcgtactta ctcaggtaca      4500
     agcgggtcag gagaaggttg ttgcttactt ctcccacaaa atgacgacac ctcaaaggaa      4560
     ttaccatgcg tgtgagaagg aagcgttggc cgcaattttg tctattgaag ctttcagggg      4620
     atatatagaa gggtcacact ttaccctgct cacggattcc tctgcattaa cacatataat      4680
     gtctgcgaaa tggaaaaccg cttcaagatg tagtcggtgg tgcttatctc tccaacagca      4740
     taacatgacc ataaaacata gacggggcaa agagaacata gttcccgatg ccctctctag      4800
     aagtgtggca ccagacccca tgccggaagt gaatgaacag tcaactccag taaggtcggt      4860
     gaatctaata actcaaacca gcgagtcggc tactacggac catccccctt cggaaaccgc      4920
     agtggcatgg tatgaagata tcatggataa aatcattgag aaacccgacg atttcgtcga      4980
     ctttcaaatt cgagatggac agctctataa gtatgtgtct gttcctgacc aacctcacga      5040
     tttacgtttt gactggaagt taattcccgc accgaaggag aggctaaata ttattagaac      5100
     ctgtcatgat gactcgcttc atatggggat tgataaaacc ctggcacgag tgcgacaacg      5160
     gttttattgg ccccgtatgg tgctggaaat tagagaacac atacaaaagt gcgttatctg      5220
     caaggaaagt aaagcaccaa atatcgcgct agccccccca ttaggagagc aacgcataac      5280
     caaccaccct tggcagataa tcgctctcga ttttattggt ccattacctc gaagcaagag      5340
     acaaaaccaa tatattcttt cagtggtcga tctatttagt aaatgggtaa tgctgtggcc      5400
     atttcggaag attgagagct catccctgag tacggtactc cgggaccaat ggttttatcg      5460
     gaattcggtt ccagaggtgg tgatctcgga taacgcctct tgttttttat caaaagaatt      5520
     ccgtgatcta ttggcccgtt tcgacgtacg acactggctg aatgcaaaat atcattcaca      5580
     ggccaaccca gttgaacggg tgaaccggac tgtgaatgcg gccatccgta cctatgttag      5640
     agaagatcaa aggatgtggg atacgcgcct ttcagaaatc gagaccgtcc tcaattcttc      5700
     gcttcattcg gccactagca tgacacccta tttcacaact catggctatg agatgctatc      5760
     tcgcggttca gaccacaata aacttaccat tgataaacag gagccaacgg acgaggggcg      5820
     aactgctcag cagaatgatc tccatggaaa gatccgtgaa ctggtccaaa ctaaattaaa      5880
     acaggcccat caagaaagcc aaaaacgcta tgatttgagg catcgagcgt ttggcaaaac      5940
     cttcaaagaa ggacagttag tttaccgccg gaacatgaga ccctcttgcg ccctggagaa      6000
     ttataacgca aaactgggat ctcaatttat tccagcacga ataaagaaga aaaaaggatc      6060
     ttcatcgtat gagctagaag atcttgacgg taagtccctc ggaatttggc cagccacaca      6120
     tatcaaacca gggtaaaggt cgatactttg ttgataactc cactgttgtt gaattgccga      6180
     tgagggaggc ggtattgctt ttccacttca ataatttcac gattggatct cgcttgacca      6240
     aggaaccgaa gagtagtcag ctttcaagca tttaatgctc caatcgccgg gttaaaagca      6300
     tccaacgttt atccagcaag attaacttca tactccttaa agaaaaataa acgtttgctg      6360
     aaaatgttca gagctctttg tttacctttt tatgtcaagg gcacccagca aggtgcagtt      6420
     tggtatgtga agtgctacca acatgataag caacctagcg taacacacaa aaagggttta      6480
     atgaaaaaat agcgcctaac atctcgtcca aaacgagata taccttcaga aaagtcctct      6540
     agtcatttct caacgaaaag ataccgaagg acaggaaggg gcatatacat taatgttctt      6600
     ggggccttga gagtggaaaa ggccaccaga atagcttttc cacactagac agaaatttgg      6660
     tctgggtggc ttattcagag gtagtaagtg cctatgaatc ttaataaagt actgtggtag      6720
     atgaatatgt gggatgaatt taggtatgaa ttgaacgttg aaagtgtgag gaaagaatga      6780
     acgagtttta tgggcccatt gaatgtaggt gaatgagaat aggcttacga caaaatacat      6840
     aggttaggaa cttaattaac agaaatactt aattaggagc aggagacgat ttgtaaattg      6900
     aatagagcga taggtgagca atgtaatccc tgtcgtgcta gccagagcaa tgaacactaa      6960
     agctattcaa tccggtgatt gcaatcttaa acaataccaa gcgtgataag caaataggaa      7020
     ctacgagatt cgaaaaaact agtggataaa gcaatattga tcagaactgt caacaaaaaa      7080
     atcttcttga gaaccaataa atgaatccgg acctggaact tgaatcttac cgccttgaag      7140
     cgtagcaccg ttgaagaggt tccctatatt ctattgaaaa gagtcgaaaa ttcccatcct      7200
     gtgaattttc attcctagga ggggaataat tgttaccgtt tctaaaggca acaatctaac      7260
     gattggagca ggaggctcaa ggccttagct agtttagggt tttgttaatt tttttggtct      7320
     tcttgttgta catagcatag tttagtagaa ttcaaattaa ttttatcagc agataggtca      7380
     ataaaaatac ccctcgttga aaaatttcac cctcaagtct ccaccaaaaa ttaccactgt      7440
     tggcagctct agttccggac actgagagag agagaggaga gaatgagagg gtcaaatgag      7500
     agagaacgtt caaggggaat ataggagaag agttagttga ttacgagacg ccaaaccgaa      7560
     aagtcaagaa aacgcaacgg aattacctat tacgaaaaaa caggaagcca ttgatccgct      7620
     accaccggag tgatttcgag tgtccgggat c                                     7651
//
ID   Gypsy-414_AA-LTR repbase;    DNA;    INV; 973 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-414_;
KW   Gypsy-414_AA-I; Gypsy-414_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-973
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-973
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2111-2111 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 973 BP; 223 A; 281 C; 244 G; 225 T; 0 other;
     cagccgaacg ccgagagtgg aatctccata agtgtctccc gccgttcctg gaaagtttga        60
     actccgatcc acggcttgtg gcagctccat aaccagtatc gccgacgaag ttgctccacg       120
     tggcctagtt atccataaga aggagaaggc aggacgagcc ttccgtgccg gaaaaggagt       180
     agtgaagttt ggtggcgagc tcgaggctgg tggccgacaa gcccctagtt attgtcgtgt       240
     cacacgtggc ggtgaagtgg caaccgtagt tgtggaggtg aggactactg tgaggcccgg       300
     tgggattacc cccgctcata ggcagcccaa catccgatga gttgccaccc cgcacacgag       360
     tctcgtgacg tcactggagg aaacggatcc aacgtcccga atggtccgtc ggatcaccct       420
     tgaagaaccc tgcttgaaga acccactcgc aaacagccga acctatgaca caatccatcg       480
     cggtcaacgt ccaagacatc cgtttctccg caacccatac agccggtatt ctgttcacca       540
     accaaggatc ttcacgatgg gtagccaccc aggaatcgta gctgcacttc cccggccgtc       600
     cgcaagccaa tagacccgag ccggtgggac cacgtgcctg gattctgtgt tcacgctccc       660
     aaactcatcg agtggcaagt acctcaagta tatatgttct ctctctctct catgcatgcc       720
     catgggcccc atcgcacctc accgcagaac ggccgcaacg ataatccccc cccccccttt       780
     atcaatgtat ctctcactga ataaatatgt ttaagcgtag ctttcattgt gttgcgttaa       840
     ttcatttcaa ggaaggagga cttgattttc ctgtgacgtc gttggtggtt tctttgaaaa       900
     tggtgttgtg ggtcttctct cagtaagtga ctgccgacct tgggattaag ccctgagcta       960
     gccgcttatt aca                                                          973
//
ID   Gypsy-415_AA-I repbase;    DNA;    INV; 5363 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-415_;
KW   Gypsy-415_AA-I; Gypsy-415_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5363
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5363
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2097-2097 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5363 BP; 1720 A; 908 C; 1191 G; 1541 T; 3 other;
     gtggcacgag gaaaaatagc tgaagtttag ctgaaagtta gtgtagagtg tgatctcgag        60
     tggtgaacat tgctggtgca gcggtcggaa agagtgcagg cgttgggcga agcgttttgt       120
     acgagctagg taagacacaa ggaagtgtag tatcggtcac cattgtgcat atcgcggttg       180
     gagcaagtca tcggcaaggt tttgcgtggc tttgaaaagg ctcgccattg tgtcgtagaa       240
     caccatagcg taaaagaaat ctattatacg gaaattgtat tgaagtgtgg tgttcttttc       300
     ttttcgacag gccggtcgta agtgacgcca gtgttcgcca tcttgaatgt gtgtttgcgc       360
     tattgtacca gcgacgcgac gcgtggtgtg aatttcaatc gaagaaatca aaggtgtcca       420
     tttgtgctgg aaaattctgg tcacagtcct ggagtatatg gtggagagcg aatccagaat       480
     aaagttatag tggaaccagt aattgagttt ttgtgtttcg gttgagaatc agcagcgggt       540
     agtgtagttc ggcgtagttt ggtgcaggta ttcagcagcg gtttttgttt attccggaac       600
     aagctcctgt tcataatctg gtccgagcgc actactggag tgcacggtta agagggaatc       660
     ccagattgcg accattkttg tggaacggcg ggaaaatcat aaaacgcagt gattgtggaa       720
     gcggccattg tgttttcgat ccggcctagc gtaagaaatt cagcagcgat ttttttaaac       780
     aaaattcgaa acgaggtgaa ttagtggcat ccttttcggc ggttttagct gcaaagttct       840
     tggtcagaaa tctccagcac gagttccagc gtatttcgga gtgctgcttc agcggcggcc       900
     atttgcaatc gcggctccga acaggcgtgg agaatcgwgt gacgtcggaa cgattttgga       960
     cacgggcgca acggagactt tggaaagaaa ggtaagtgat tattttctta taattgctca      1020
     aggttagaac ggattttcaa attgtttaaa aattttgtac agacatggct ctgattggta      1080
     gcattgaccc gtatgttccg ggctcatctt tctcaaatta tgtggaactt ttagagtatt      1140
     tctttgcaag taataacatc gatgataata gaaaaaaaga cctgttcatg aactttgccg      1200
     gaatgacagt gtttgaagaa ttaaaattac tttaccctgc tactgacctg aaaacgttaa      1260
     gttacgcgga aataacaaag aaattgaaag aaagatacga taaagtggat tcggaaatcg      1320
     ttttgaggta taaatttcgt tgtcgtctac aaggaccaac agaatccgga gaaaattaca      1380
     ttttggcagt aaaactattg ggagaagctt gtgattttgg ggcatttcgc gattcggccg      1440
     taagagatca gcttgtatat ggagtttacg ataaagatct gcaaactagg ctattgaacg      1500
     aagaagagct aactttgaaa tcggcggagc gcattattaa aaataaggaa atggcggttt      1560
     gcaatagaca aaagctcaac ccagatgaaa atgttaactc ggtgaagttt aggcttggtc      1620
     gacgagaatc tcgctatgat tcgaataggg cagatcgtga tagaggaagg tcgagaagta      1680
     ggaacagaga taatggacac agacattttc gagaaagaac aaggtcagat tcacgtaaca      1740
     atcgggttag tagcaaggga aggtacgcaa attttgtatg ccattactgc aaagctaaag      1800
     gtcacattca gcgcttctgt taccggtgga aaaacagcaa ccgaggggca gtgaagtttg      1860
     tggacgaagt agacaacgag gatccgcatg actatttcaa gagactgcaa attgattatg      1920
     acaccgacaa tgaaacaggt gactatcctt gtctcatgat taaaacaata aaacacataa      1980
     gtgaaccttg tctccttgag gtcaatatcg agaacaaagc ttttaaaatg gagattgaca      2040
     gtggttccgc agtatcagtt atgagccgtg cagattattc tagaaatttg agtaatgttg      2100
     ttttgaaaaa tagtaaacgt agactagtgg tgatcaatgg atcaaatttg gaagtttttg      2160
     gtgtggctac agtaacagtt tcaatcaatg aaaagcgatg ttcactagaa ctgatcatac      2220
     ttaacagcaa ccaccaattt atgcctttgt tgggaagaga ttggttggat gttttttatg      2280
     taggttggcg taacaatttt tcaaacgttt tttctattag taactcgatt gattcggatc      2340
     aaaacaaaca gtttattgag aagatcaaag ccaagtatgt aaatgttttc aatcmagatt      2400
     tttctaaacc aatagttgga cacgaagccg aattagtact tcgagaaaat agacctatat      2460
     tcaaaagggc atatgatgtg ccttacagga tccgtgacaa ggtgattgag catttgaata      2520
     ctttagaaca agatggcatt attaccccaa ttaaaactag tttgtgggca tcgcctgtcg      2580
     tggcagttat gaagaaagac aatagtatca gattagtcat tgattgcaaa gtttcgttaa      2640
     acaaagtttt gattccgaat atttaccctc ttccaacagc ccaagacata tttgcttcct      2700
     tagccgattg taaggttttt tgttcgttgg atttggcaac tgcgtacaca caattaaatt      2760
     tatcaaaagc atctagagaa ttggtggtaa ttaataccat aaaagggctt ttcaaataca      2820
     acaggttgcc gcagggagcg tcttccagcg cggcaatctt tcaacaggtg atggaaataa      2880
     ttttaaaaga cattaagtac gttgttgttt accttgacga tgtcctaatt gcgggaagaa      2940
     atttcaaaga gtgtcgtgat aatcttttac ttgtgttgga aaggttgaat gaagctaacg      3000
     ttaaagttaa ctttaaaaaa tgtacttttt ttactagcag tttaccgtat ctgggacata      3060
     ttatttcgga gaagggcatt atgccaaatc cagacaaagt ggaaacaata caaaaagcca      3120
     aagtaccaac atcagtaact gagttaaaag cttttttagg gttaataaat tattatggta      3180
     gatttttgcc aaacctttct tctacacttt atcccttgta tcagctgctc aaaaaacata      3240
     atcgtttttt atgggattca aactgtgata aatcttttga cgaagcaaaa aaactaatac      3300
     tcaatgccaa tatgctagaa ctttatgacc caaagaaacc gattgtagtc agtactgacg      3360
     cttcttcata cggactaggg ggtgttatgt cccatcttat caacggagtt gaaaagccca      3420
     tatcatttac ttctttctct ttgaactcgg cacaaaagac ctatcctata ctgcatttgg      3480
     aagctttggc catagtgtca acggttaaaa agttccacaa gttcctctat ggtcaaaagt      3540
     ttacaatata cacagaccac aaacccttat tgggcatctt aggtaaaact gggaaaaact      3600
     caatatatgt cacgagacta cagcgatata ttatgaagtt atctatttat gactttgaaa      3660
     tttgctatag accgtcagcc aaaatgtgca acgccgactt ctgttcaaga ttcccgttga      3720
     cggacgaggt tccaaagaaa tgtgatccaa tatacgtgaa aagtttgaat ttttcagatg      3780
     aaactccgat tgatttcaaa ttggtcgctg aagaaaccaa gttggactcc tttttacttc      3840
     gtattatgac atacaccatg gaaggttggc cggatagaat agataaaact ttcaaaaatg      3900
     tgttttccct tcatcaagat tttgaagtag tggagggctg tctactttta caagacaagg      3960
     tagtgatacc aaggtccctg caacctaaaa tattaaaact tttacatgct aatcatgtgg      4020
     gccctattaa aatgaaacag caggccagaa ggagtgtgtt ttggttcggc ataaataatg      4080
     atatcgacga tcatgcaaaa cattgtgata catgtattaa aatgaacatt gtaccaggta      4140
     aaaacatcac ctataaatgg actccaacaa atagaccttt cagcagagtc cacgctgatt      4200
     ttttgcagtt tgaaagagaa acgtttttaa tagtggttga tagtttttct aagtggttag      4260
     aattagcctg gatgaaaaat ggtacggatt cggagaaggt cataaaacag tttactgata      4320
     tttttacaag gtttggtttg cctgacgtga tagtgactga taatgggcca ccatataatt      4380
     ccagaaattt cataaacttt ttagagagac aaggaataca agtgatgaaa agtccaattt      4440
     atcatccaca aagtaatgga caggctgagc gtcttgtgag agtagtcaag gatgtattaa      4500
     aaaagtttct tttggatgcg aatttcaaac acctaagaat gcaacaaaag cttgattatt      4560
     ttctgtttaa ttaccgaaac acctgttcag caacaacagg gcacacacct gctgatagag      4620
     tcttaggtta caaacccaaa gtattgttgg atttggttaa tcctagaatg agctataaaa      4680
     atcagctgat atgggaagag aatactcctt acagaagcag aagagttgct acagaaccaa      4740
     taaagacaaa agccttggat ccacttgata ctttagcaag aggagacaag gtttattaca      4800
     gaaataacaa accaaatgat gttcaacgat ggattttagc cacttttatt aagaaagttt      4860
     ctcaaaatac ttttcagatc gcgatatcat caaatgtgat ctcggctcac agggggcaga      4920
     tcaaagtagt taagaattct gaaccgcggc gcaatgtggc gcttcaggaa gttgcaacaa      4980
     gggtgcgaat ttcatctaaa aggcgattcg aaagttcaga tgaagatgaa tcgttccaga      5040
     gcacctcatc tcgacaggtt ctgcttccac ccactcctcc gccagttaga agtgaagttc      5100
     atcccgcagc attgcagtcc tacaatgaaa cgcaagccac atacaacgat aagcaagtac      5160
     ctcggaaaat atctccccag agtagtgatg ttctcgaatt aaggcgatca aaaaggttca      5220
     agaagaagaa aatagattca gattatgttt atactagtta agtatcattg gaacaaatgt      5280
     tctatctgaa gttaagataa aagtgtttga atttaaagtt ttcattttta ttattgatgt      5340
     tttaaactta aggaaagagg aat                                              5363
//
ID   Gypsy-415_AA-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-415_;
KW   Gypsy-415_AA-I; Gypsy-415_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-225
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-225
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2112-2112 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 225 BP; 75 A; 35 C; 47 G; 68 T; 0 other;
     tgtaagattt gaaatctgaa tgattatttc aagcgtgtgc tatgctgtca gattaatact        60
     gtcggttcga acgattgcca accatttgga atacaaacac caaaatccat gcatgtataa       120
     atacacgatc gaataaagag tggagtgtgt tcttgatttg gaagttgagc tgttaacact       180
     tgtgttgtag tgaaacggaa gaaataccct gacacaatct ttaaa                       225
//
ID   Gypsy-416_AA-I repbase;    DNA;    INV; 4719 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-416_;
KW   Gypsy-416_AA-I; Gypsy-416_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4719
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4719
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4719 BP; 1347 A; 922 C; 1079 G; 1371 T; 0 other;
     actcagaagt gggatttttt ctcgcgcaat cgtgtaaaaa atgagccgtc taaaccgcga        60
     agaacttgtt gagtggctgc agcagaataa agtggaattt ccggaatccg caactttacg       120
     tcatctgcga gcattgtatg agagttccag tggggcccgg ggcggagcac tcgaagatga       180
     aaacccccca ttgccagcgg atgatgaatt ggacgtggaa ttgcgcgctc tggaaaaacg       240
     tcaaaggatc ctaaagctac gccgacagtt ggaggaggag gagcgtctgt tagtgagaca       300
     gccggaagtg aaagatgtaa caggctccat catgcgtttt tctggaggag atacttgtga       360
     cgccaaccga tggctcgccg aattcgagtc gacatgtgaa acgttggggg gtgatgatgt       420
     tttcaagctc cgatgcatac gtcagctcat ggaaactgga accgaggccg aatggttcct       480
     cagggtagat aactccgcca actaccggga attccgtgca agctttttgg agaattttgg       540
     gtatcgttac tcggtagcag aagtcatcga caagttgcgg aaaactacgt tcggaaaatc       600
     gaagatgtct gttactggtt acatcctacg gatgcaggaa atagcatcga gagccaacat       660
     cgaagaaagt caggttgttc agctaatcat cgatggattt caggatcgtt cggcgaatat       720
     cgcagttctt tacccggcca ggaatcttgc agaattgaag cagctttctc gtcggtatgc       780
     gcagctgcgc gatatgtacc atgctcaatc tttgcaacga ccaccagttc agaaaccaag       840
     atcggaagga aagccagatt caacgaggtg ctacaattgc tccggcattg gtcatctatc       900
     gatggattgc aaggaaccac gtcgagcaaa gggttcgtgc ttccgttgtg gctccacgca       960
     acatcttttg aaagagtgtc caaaaccagc accacgcaac aacaatcagg tggccctagt      1020
     ggatgagttt cgtcgggacg ccggaagaga ttccgctgct gaggaagcag cagcaacact      1080
     atcggaacta aatattgtaa gtattgcttt ttcaaatgac attgacacgc aacaatgtaa      1140
     cactattgtt tctttattcg acactggcag tccaattaac ttcgtacgcc gatcgctggt      1200
     tcctccgctg tgcagtttga gagaaaaaat tgattctgga tataaaagta tcggtaatca      1260
     tcctttatgt acttatggaa taattgatgc gattgtaata tttcgcgatc ggaaaactat      1320
     gattaaggta catgttgtac cagacagttt catctgcgtc ccattgcttt tgggtcgatg      1380
     ttttctagag aaaattggtg tcacgttgta tgacacaaag tttgttaaag ctgccagagt      1440
     aaaaactaat gtagaagttg ggctagaaaa ggaccaaata aaaattgatg ggaaagtgtt      1500
     acattgtgcg tttgatttta cgactggcat ggattcaaaa acgattacga aatgctctca      1560
     gtgcagtcaa ccatcgcctt cagtgacttc tgatacaatg aatattccgt ctgcctctga      1620
     ttcttccgtt ccgaacaagg gacaacagtg tgtcccgaca ttacgaagtt gtgaaatatg      1680
     ttccgttccg taccgtcatg atcttggttc cattccattc cgatgcgaga attgttccgt      1740
     actttcgtgt gttcccgatg tgttctgcat tgatacgatt gatgacgtgc aagattataa      1800
     tattgatacg aagttagatc gtaaaactag agaggctata cgtgacatta ttgaacacaa      1860
     ctattccgat tggcagtcga tccctgctgt gaaacatgat tatgaaatga ggcttagatt      1920
     gacttccgat gttccgatta gttttgctcc tcgtcgactt tcgtattccg ataaaaaaga      1980
     agtagacaac ctagttgatg tcttattgaa ggaaaacata atccggccca gtgattcccc      2040
     ttactctttc cctatcgtat tgagaaataa gaagtctggt gaaaagcgat tgtgtattga      2100
     ttacagatct ttgaataaaa taactgttcg cgatagtttt cccattccgc taattgatga      2160
     ttgcttggaa cgattagagg gtaagaagta ttttacagta ctcgatttga agcacgggtt      2220
     ccatcaagtt aacgtttccg aagatagcat tccgtacact gcgtttgtga cgccaagtgg      2280
     acagtatgag tatgttaaga tgccatttgg gttgcgtaat gctccagcgg tattccagcg      2340
     atttattaat agagtgctcg aacccttttt gaaggaagga actgtcactg tttacttgga      2400
     tgatgtgacg ttggcaacaa atactgttga ggaacatctt cagcttctga agcgtgttat      2460
     gcgacgttta gcagaataca gacttgaagt gaaattcaag aaatgtttgt tctgttatac      2520
     agagattgat ttattaggct ttacgataaa tcaaaatggc atacggccaa ataataccca      2580
     tctggaagct attaaaaatt tgccatttcc atcagacgcc aaggaggtga gtaaatgcct      2640
     tggtcttttt tcctatttcc gtcgattcgt tccatccttt tcaagcatct cacaaccact      2700
     gcgtgaattg atcaagccag gcgtaaagtt tattttcgac gagaagtgca aggatgcctt      2760
     ttcaactctc cagaataaat tggtttcctc tccgttgttg gccctgtact gtcctaatag      2820
     ggagactgag ttgcattgcg acgctagttc tgagggcttt ggtggtattt tgttgcagaa      2880
     acaggaagat gggaaatggc atccagtcgc atacttttca agacgaacta cccccgctga      2940
     gtctcgctat catagtttcg agttggaaac tctggctatc atatattctc ttcgtaaatt      3000
     tcgtatatac cttgaaggca ttccgtttaa gattattact gactgtaatt cgttaacgat      3060
     gactttgaat cgtaaaagtg tgaatgcacg aatagcgcgc tgggctttag agttggagaa      3120
     ctaccactac acgattcaac atcgtagtgg taagttaatg acacacgttg atgctttgag      3180
     tcgatatcct tcagtttatg ttaaaacgat tgataattct ggtcaaatcg tctcctctgt      3240
     tagtccagat gatgttttct ttcagttaca agtgactcag aaccgtgatt ccgaaattgt      3300
     taagttacgt agtgagttag agacaggcgt ggtcaagggt tttgcgttgg aagatggatt      3360
     ggtgtacaga atatccaatg tagagaagtc tgataaactt ttactctatg ttccgcgcga      3420
     aatggaaaat aacataattc ggcttgcgca tgaaaaagtt tgtcacatgg gggtgacaaa      3480
     atgtattgat cagataaaaa tgcattattg gtttccaaac atgaaggaca aagttaatca      3540
     atacattcaa aactgtgtac gttgcgttat gcattcagta ccgccgagca gttccgcacg      3600
     aaacttgcac aacatcccaa agaagcccat tccattcgat actgtacacg ttgatcattt      3660
     tggtcctctt ccatcaattg tgtctaaacg gaaacatatt tttgctgtcg ttgatgcatt      3720
     tacaaaatac gtgaaattgt atgcagtaaa ttcgactagc accaaggagg tatgcatttg      3780
     ccttgacaag tattttgaaa actatagtcg gccgaggcga attatcagtg atcgtggatc      3840
     ttgttttacg tctttggagt tcaactcata tctactggat aataacattg aacatgttaa      3900
     ggttgccacc gcgtccgccc aagcaaatgg ccaagttgaa cgggttaata gagtgataaa      3960
     gtcgatgctt gccaaacagt cggagcccct tcaacattct gattggacca agatattggt      4020
     taaagtagaa tatgctataa ataactctgt acattctgct actcaacaga cacctagcat      4080
     gctactattt ggtgtgaatc aacgaggtcg tgaagtagat gctttatccg agtttctgga      4140
     ggatgtcagt ccttccaatt ctgagagaga tttgatttca ctgcgagagt tggcttccgg      4200
     gaacataaag attgcccaag accgaaattc cgcctatttt ggaaaacgac ataaagctcc      4260
     cctcacgttt tctgaaggtg attttgtggt cattcggaac attgacacaa caattggaac      4320
     taataagaag tttgttccaa aatataaggg tccatatcgc gtatataagg tacttccaaa      4380
     tgatagatac gtcatcaggg acatagagaa tggacaaatt tctcaattac cctacgatgg      4440
     tataatagag gcatgcagaa tgaagcgatg ggttgactgg aggaaatctg agggtggaaa      4500
     atctgaacca tcgcctcaat cggaaataat taatgatcaa atgtgtcatg actgagaaag      4560
     caatactttt catttgtgtt attctgtctc tattaatttc cttctgtgtt tactaatatt      4620
     ccgagtcgac cgcggaaaaa ttcggttgca ctttcttttc ctgtgtacta atctatatgt      4680
     tacatgatcg agtcgatcaa aagtcaggta tggccgagt                             4719
//
ID   Gypsy-416_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-416_;
KW   Gypsy-416_AA-I; Gypsy-416_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-233
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2113-2113 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 233 BP; 59 A; 39 C; 48 G; 86 T; 1 other;
     tgtagtagaa tttcagacta aatcgttgtt gtttgttaag agtgtattcc gttttaagat        60
     tagcgtgttt tcagtgtatt ccgttttccg tgtttcatgt ttttattaaa ttccgttgag       120
     tgtgtaattt ccgctgtaag attgatgaat aaagaaacca ttckagttgt gacaagcgaa       180
     ccgcgtggac gtcatcctat acttcggatc cgaaatacag actgcccctt ata              233
//
ID   Gypsy-417_AA-I repbase;    DNA;    INV; 7259 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-417_;
KW   Gypsy-417_AA-I; Gypsy-417_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7259
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7259
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7259 BP; 2202 A; 1568 C; 1567 G; 1922 T; 0 other;
     attggcgatc cgcgtaaaaa aacaaaaata ttcgcaatta gtgattgaat attttttaaa        60
     cctgcttggg gagacccacg aaagcatttt cgttggttca tcgggaacac ctcagagtga       120
     cgtcattgat aatgacttgg tggatgttgg tcaaggtttg tttgaatctc ttgctatctc       180
     ttactggtcc gagtcacacc ctgcgataat tgaaactctt ctgaattgcc ccgagaatta       240
     ttttgtaatg taaatattat tattacgttt atttcgttat attcttacta tttttcgcta       300
     ttttgttaca gtattgaatt tgaatttcta taaattgaat tgaattgaac tacttaggta       360
     tatagataga acataagcta ggattaaaat tgaattgata agttttgcaa gttttgaatt       420
     gtttataaag tgaattagag atggctgatg gtggtaatat tatagaaatc aatgaagaag       480
     atcttagaac tctgttctat gacattcgtg ttgatcatct aaacgaagat gagcttgatt       540
     tcgaattaga aatacgtgag attatttttg ggaatgaaga gtcaatgtcc agaaaacgac       600
     gtgctctgag ggagagattg aaacaggaga aaacagaaac gtctatagta gagtatgcct       660
     tcaaacgaga tcctaataat gaaatattag cgtgtcagag caagttgcaa gcgatagaaa       720
     atacattaaa attggaacaa gaactctaca atttacgtaa gttcaaagag gttcactcgc       780
     aacagctcac cgagaatatc attcatgcca atagtttcaa cagtcccctt caaaccacct       840
     acacagggac ccggccaaag caatccgggt cggaaaccat agaagttacc aggcaggtcc       900
     ggttcaccga acctgatcca tggacagcag taacgaaagt taacacttac accgccccag       960
     tcagaaccag cttggtggaa ggtttcactt ggtctgggtc tcattttgca gacatcatga      1020
     ggctttcata tcagtctgaa ctaaattcag caagttatcc ggccattaat acgatcacta      1080
     atccaacttt atcgaacgcg gccccaagaa tggcctcatc gatttgtcca agcactgttt      1140
     atagttatcc gtccatccta gtgaccaatc agcctatctc aacatgtacc tacacacatg      1200
     ccgcagcgac gcctagacaa attccaactt cgtctagcat gccagatcaa agatggaaaa      1260
     tagctccatt tgtttctagg gagagtactt ttacaccata cccccatgtt tcagtttaca      1320
     accctattgg aggcccaact tcttactcgg catcagatcc cattgtcgaa tgcagatcag      1380
     gattcccgca atatgccttt cctagcttca tggagactcc aaacctgccc gagcagatta      1440
     gctgtgtcgg tattgcggcg cctccctttc cctctagtga tacaacacga ggattgggaa      1500
     atgcgccttt cattccccag ccgatgattg atccggttcc aagaccatat ggacggaagt      1560
     ctcttccggt ttctaaatgg aagatagata aatatgccgg tacagaccaa ggactcagac      1620
     tcaatgagtt tctgcatttg gtttcacaac tagctttatc cgaaaatgtg tcggaacctg      1680
     agttgttcga ttccgcattt cacctcttta ccgggccagc tcttagttgg tatatgtcca      1740
     tgaggtcagc gaaccgtctg gcgaattggc cacacttagt aatggagctg agaaaaaatt      1800
     ttgctcatcc agaactggat tctctcgttc gggctaaaat ataccaaaga cgtcaacaaa      1860
     gaggggaaac tttccaagag ttttactacg acatggagag tatgttccgc tccatgatca      1920
     atccgatgaa tgagtgggaa cgtgttgacg ttttacgtcg aaatatgcgg acggattaca      1980
     aaaaggcctt gctttggaag cctatagcaa atctgacaga attgttagag gcggggcata      2040
     tgatcgatgc atctaacttc tctctttttg caaaagcgtt tggccccgaa aagtctgcca      2100
     acgtggtttc agttgggaag acgaatagag acgataacaa taaccataat cgacctgcaa      2160
     tgaatcagaa aaacctagag aaatactact ctaaatccaa ggatacgaag aatgatccat      2220
     caaagaaaga attcaagaaa gacgaaccca aaacccctag ttcttcaact aaacctgtag      2280
     ggcatgagtc cccacaggaa ggtagttcaa aaccatccag aaccctagag ttcttggtaa      2340
     acggatataa acctcctcga agttttgaat gcctgtattg caggcagcca aaccactcgc      2400
     tagaacagtg tcgccactat aagggcatga tgtgtctagt ttgcggtttt aaaggtttcg      2460
     agacacgaaa ttgtccctac tgtaaaaaaa acgggcttca gacgatcgaa aaccgccgac      2520
     cgtcgagccc acgcccacac gcgtaaatac ttatccaaaa ggaatcaccc cttccgaatg      2580
     gtgggaacca gtatttgaag aggcgtatga ttccaattta accgaatcac tcacaatttc      2640
     tttgactcat cacaacgata acagaccgta cgcagccatc aagatttacg ggctgccatc      2700
     taaaggactg ttggactctg gcagtcaact tacgctaatt agcgagcaga tctacaataa      2760
     attacaaggc gccaaattac aacctcttac tcagctcacg aaagtccggt ccgctaatgg      2820
     ttcggagctt aaggttctgg gtcaattgta catacccttc aatttccagg gaaaaattaa      2880
     aatcattcac acactggttg ttcgacagtt ggcggttgat tgtattttgg gaatggattt      2940
     ttggcgaaag tttcgcattt ggccgacaat acaaagctgt gctcaagtcg acgtagaaga      3000
     agttaaatct gcgcatcctt cgagtacaac tctgaccgat ctagaaaggt accaactcga      3060
     aacaaccaaa aatcttttta aagtggcaga ccccgatgag ctttcaatga cgcctttaac      3120
     agagcatcgc atagaaattt cagacgcgtg gaagggtaaa ccacccgtac gtcaataccc      3180
     gtacacattg tccccaaagg ttcgacaaaa agtaatctcc gagctagaac gcatgttgcg      3240
     tataggaatt attgaacgag cccactcgga ttggtgttca aatatagtcc cggtcattaa      3300
     accatcaggg aaagtccgtc tctgtctaga tgcccggaaa gtaagtgagc ggaccgttag      3360
     agacgcttat cccttgcccc accctggccg tattttagga cagttaccgc gggcgaggtt      3420
     cctgagtacc attgacttgt ctgaagcctt cctacaaata ccattggaaa aaacctcgcg      3480
     acgctacact gccttcagcg tacaaggtaa aggcatgttc caattcacca ggcttccctt      3540
     tggcctggtc aacagtccgg cctctctatc caggctgatg gatcgagtgc tgggtcatgg      3600
     tgaattggaa ccgaacgtct tcgtctacct tgacgacatc gtcatcgtga cggagacgtt      3660
     cgaggagcac attaagttat tgcacgaggt agctcgacgt ctaagtgacg ccaatctttc      3720
     tattaatata gaaaaatcaa aattcggagt cgaagagttg ccgtttctag gctatcttct      3780
     ctctacggaa ggacttcgag ccaacccaga gaaagtacga gctatagtgg aatacgatag      3840
     gcccaattct ataaccaagt tgcgccgttt cctaggaatg gccaactact atcgtcgatt      3900
     tatagacgac ttcagtggaa ttacagctcc actctctgag ctcctcaaga ccaaatccaa      3960
     aatcttgggt tggaatgagg ctgcagaaga agctttcgac aaaataaagg agaaattaat      4020
     ttccgctccg attctctccc ctccagactt tgagttggag tttacaatcc agaccgacgc      4080
     aagtgatgtg gcggtggccg gagtgcttac ccaaatccaa gatggacaag agagaattat      4140
     agcttacttc tcgcataaaa tgacaactcc acagcggaat tatcatgctt gcgagaagga      4200
     agctctagcc gccctcctgt ccatcgaggc atttagagga tatgttgaag ggtcgcattt      4260
     tacactaata accgactcca ctgctttaac ccacataatg acagcaaagt ggaagactgc      4320
     gtctagatgc agcagatggt gcttgcaatt acaaggccac gacatgacga tcattcaccg      4380
     gaaggggcga gaaaatacgg tccctgacgc tttatctcgc agtgtcccta ccaatttggc      4440
     ttcacatgtc gttcaagctg aaaatcaggt tactccgtcg tcggaaaccg gaaaccctaa      4500
     tcgcttggaa tccgatacgc aatggtatga gaatctgatg gacgaaatcg ttgaacatcc      4560
     agaaaaatac gtcgacttcc atatacggga gggaaggctt tataagtatt tgtctacccc      4620
     cggatcagtc aacgaccaac gttttgactg gaaggaaatt ccagccccta atgagcggtt      4680
     cgcgattctt gtagagaatc acgagaactc aatgcacgta ggcacagaca aaactctggc      4740
     ccgtattaga cagcgctatt tctggcctcg aatggcaatt gaggttcgag aacatatcca      4800
     aaagtgtacg gtatgcaaag agaccaaagc ggccaacatt tccttagctc ctcctttagg      4860
     ggagcaacga attactacac atccgtggca gatcattgcc atagacttta taggcccctt      4920
     acctaaaagc aaaaagcaaa atcagtatat attttcagtg atggatgtgt ttagcaagtg      4980
     ggttatgttg gtaccattcc gaaaaattga cagtgtggct ctttgctgtg cgctaaggga      5040
     ccagtggttc ttccggaact cggtgccgga agttgtcata actgacaatg cgtcttgttt      5100
     cctttcgcga gaatttcgtt cgctcttgga acgatttgat attaggcact ggctgaactc      5160
     aaaatataat tctcaagcga atccagtgga acgggttcac cgtactgtaa atgcagctat      5220
     ccgcacctat gtacgtgaag accaacggct gtgggatagc aaattgtcag aaattgaaac      5280
     agtactcaat tcgtcactgc actcaacaac cgatttaact ccttatttca ctacccacgg      5340
     atatgagatg atgataaggg gacccgatca caactttagt gaatcgggga ctgatctaag      5400
     ccttgaagaa agggcaaaac gtcaagccga actatatggc aagatttgtg acttggtcag      5460
     agagaatctt gccaaggcac acactgaaac taagaaacgt tatgatttgc ggcaccagag      5520
     gttcggaaaa gaatttcaag aaggacaatt agtgtttcgc agaaacatga aattgtctag      5580
     cgcaatcgag cattataatg ctaaatatgg tcctcaattt ttgccagcgc gtatcgtacg      5640
     gaaaaaggga tcctcgtcgt atgaaatcga ggacctcgat ggtaaacaac tcggggtctg      5700
     gccggcagct catctcaaac cgggataacg ggtcaatcga aagggtctac tgcatcccga      5760
     tacattcaac aattttcagc gatagtcaga atgggagcca aaattctgat taaattaaaa      5820
     ttttctcggt ttttgttttc ctttcgaaga acgatgaact ttctcacttg ttagctgtgt      5880
     tcaatgactt tgatcgaact tgctcggggt tggttgtact agctcgtatt ttttgtcaac      5940
     aaataactgt caaagctact tcgagcaact ccaagctgct ttctcaatga acgctctttt      6000
     tcgcttcgaa ataaaacaat tccatttttg catgaaaaac tgtcactctc cgcactaatt      6060
     taccggaatt ccacgtgaaa aaaaaattcg cgcacttaac aatccgtatc gcttcggaat      6120
     tttgcttttt tttctcaatg tttacgtttt taaacgtcaa aaacacgagc tactgcgagc      6180
     tggttgaact agctcggact ctagcttcca acctgtttcg agcgactcgg agttggttgg      6240
     actcggctca atgaacacaa acccgagcga ctcgaagtag gttggagtgg ctcaatgaac      6300
     accaaaagct gactcgcaag tggttgcaac caagttcgag cagctcgttg aacacagctg      6360
     ttgtttggtt gctgatttga catatcaatc agggaccgaa ctgaagttgg ccgtgatgtt      6420
     ttgcagatag cggcgaactg caataaaaga gtgcgctcac aactattcgg cgatctgcaa      6480
     taaaagagtg cgttcacagc tatgttaaaa aaatatatat ttttcagaac cggatatcag      6540
     acaaatgctg tctagggtaa agttttcaga attgatcgag ttccaattat ttctgccccc      6600
     tattattaat ttaaaaaata tatataacgg gttaaaaaaa tacaacagcc cactcaagcc      6660
     tgaggtagac ctagcctcga gtgataaatc tgtataccgc tgagacgaaa ggcatcgctc      6720
     ggaaaattag gtttcaggag agtactgaga agtggattag ggtaggtaat gttaaggtaa      6780
     tatatgaatg gttgtgaagg tatgaatgag taagggccca atgagtgtac acgcatgaca      6840
     taggtgaatg agtagtattt aacattagtc agtaggataa ggaagtacca aatagttgaa      6900
     aaagaagaga ggcaatttct tcaccgatat gctatgaaaa tttttcaatt cttatataag      6960
     aaaaacgttg acgtaaatag cgaaagatag ttcgttaatt ttgttttgca cacggaatag      7020
     caagaatggc tgaaaaataa ggcattgtca agagagttca ttattcaaag aaagtgaagg      7080
     caaaccggta cgagcaatta aatacttata gatccaaact ggcgccctta tctggagagt      7140
     tttatgagat gctgtcactt ggaacctttc ccgatgacta acaaaaatct ataacttact      7200
     gatgaagcat tcaaaaatta agctttttaa gcttaatttt cactctattg ggagacaat       7259
//
ID   Gypsy-417_AA-LTR repbase;    DNA;    INV; 1275 BP.
XX
AC   .
XX
DT   22-JAN-2019 (Rel. 25.07, Created)
DT   22-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-417_;
KW   Gypsy-417_AA-I; Gypsy-417_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1275
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1275
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2114-2114 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1275 BP; 348 A; 357 C; 305 G; 265 T; 0 other;
     tgttaccgaa accgttaaca atttggcaac aaactttcat gtccgcaaat actaacatag        60
     attgtgagac tatgcatgta gtacctttga aggggattag acaaataaat ttcggtttat       120
     ttgtctatcc ccatccaaca ttgttatcac taacgctacc cggctcacac ccctaccact       180
     tgagagcgaa atcaccgagg gcaaccccac atccggggcg aagagacaga gtgataaaga       240
     ggagagagga gaggggatgt aaggaggaaa aagtgagtcg gcaggagagt tgagtctgga       300
     ccgtcaaccg atcaagacga ggcgctggaa aattaagaac ccatcctgta aggaaagtaa       360
     aaaagttgaa attttgcgga agcgaggatt ggcccgaagt ccgacttcaa cgagtggagc       420
     aaagattgcg actccagctt ttccagtccg gagctccgaa gtcctacccc acgccgtcca       480
     aactggggac ggggactact gctgaaggcg gaatattcta ccgtttatca ccccacgaca       540
     cgtgttcttg ggtcaactcg gcctactggc ggtgtgctga agaactggag cctggttccg       600
     gattatcaat cccggctggg cgcccaatag cgtcccgtgg tgaccctcta aacccggcgt       660
     aggaattctc cgccattccg agtagcttca ggtgccacgt ggcgaaacaa ccccaagaaa       720
     ccgagcgttg cgagaccagt gagacccggc aaggcgacga tcggcactgt atcccacccc       780
     tttgccaaag acgagcgccc ccgggtactc caggcgggag aacagctgga ttctggccat       840
     ttccagtaca gcaacaaccc accgttcgga tgcactgacc cgtatatcca gggtaagccc       900
     ccccccccag aacaaccgaa ggaaccattc ccggccaaca actcctgcaa cggtgcccca       960
     tcaagaagcc agctcaggta tgtcaagcaa accccctcct ccacgtcgca tgtcctgcta      1020
     tgggccccaa cgtctccgat cggccgcacc gatactaacc tctaactaat cccaattcag      1080
     aaaaaatgaa tttaaataaa cttaagtaaa atgtataacc tctcttttaa tttcaaacac      1140
     gagagccatt ggttgcatga aagttcgttg tccttcttag ttgcgtccac ttcagcttca      1200
     ctttatccgt gtgtcctcta agcaggtcta gagccgaccc tgggaaggca aaccgtgagc      1260
     tagccgtttg tcgca                                                       1275
//
ID   Gypsy-418B_AA-LTR repbase;    DNA;    INV; 1229 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.07, Created)
DT   05-APR-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-418B_;
KW   Gypsy-418B_AA-I; Gypsy-418B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1229
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1229
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2084-2084 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1229 BP; 330 A; 331 C; 293 G; 275 T; 0 other;
     tgttaccgct aacgttaaca atgcagtcaa cagacctgtt gtgctatccc tggtagatta        60
     ctaatttttg aattaatacc acaaacattt gtgagacttc gcatgcagta gctgttaggt       120
     gaaataaacc ccaaaattta cccattagcg ggtttatttc atctcaaaat ttgtcaatca       180
     actaacgcta ctccggatgc cgcacatctc tacgggcgaa tttgttgagg gcaactcaac       240
     atccgaggcg aaaaaggaaa gtggaagagg cgaaggggcg aagaggagga cttgcggagg       300
     agtggaattc cgaaggagcc gaagagaaga gttagttggt cttgaactgc gaaatagaac       360
     acacctaagg aaaacaaaaa agtcaagtag aagttgtcgg tgacattcgg gggaagctag       420
     aacgcccagg aacatccagt gaaggtggaa ccggaggatt caaccattat tcgaccggcc       480
     agccttcgca actagatctg gctctggcaa ctggctctca gcgtaggcga tagcggtctc       540
     cggtaaattg tgccaccacg tgcctctttg gcaggcccac gaacatccta accaaaaatt       600
     ccgccggcca accggggata tccagccaac taagactgtc gcctaaaacc attttgagcg       660
     ggtcatcgtc cgaatagtag aagtatccgt cagcgtaggc gattgccggc agagtcctcc       720
     ggataatcgg gccaccacgt gcgcccactg ccaggttcta accgaggatt acgcaaggct       780
     tcggcacggg tcaagcgaac cgtccccatc cggccgaaac ccagaaacgt acgcctgcca       840
     cgtggcccac cctgttagca gtccagcaag gccttccaga agttgcccga ttaccagttc       900
     ccgaagccaa tagtcaccga gccgccctac agcccaaggt atgtggtgta agcaccctct       960
     tccctctgtt ctgcctacta tgggccccac ctacatcaat cggccgcaac gttactaacc      1020
     cctttaaccc taacccgcta agatgaaaat aaaagttaag taaaatgtat caggttgctt      1080
     ttgtttcaac actatacaca aatccttggg ttgcatgcac gtccgttgac tctgtaccgt      1140
     tcctttccac ttcgtattgt tccgtgtgtt ccctaagcag gcagtgccga ccctgagaag      1200
     gccttcctat gagctagtcg tttgtcgca                                        1229
//
ID   Gypsy-418_AA-I repbase;    DNA;    INV; 6999 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-418_;
KW   Gypsy-418_AA-I; Gypsy-418_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6999
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6999
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6999 BP; 2140 A; 1490 C; 1549 G; 1820 T; 0 other;
     attggcgatc cgcgtaaagt aaaataaaaa aatattcgta atataattac aaatattttt        60
     tttacctgct tggagagaca cacgaaaact ttttcgttgg tttatcggga gaacttcttt       120
     gtgacgtcat cagggaggac tgggtggatt ttggctaagg tttgtttgaa tctcttgctt       180
     ctcctactgg tccgagtcac accctgcgat aaatgaaact cttttgaatt gctccgtgat       240
     ttgttgatta gtattagtat tgcaaacact attgcagatt tcttactatt tttcgctatc       300
     atatgtacta tagttgaatt gctatgaatt gaattgaact tgaagtgtat atatataagc       360
     taggtttagg attgattgtt gaatttttat atttactatt gaattaataa gactctgaac       420
     tagaaatggc cgaaggtaga aagaatttag aagccagaga ggaggatcta aggattctct       480
     tttacgatat tcgcgtagat catttaaatg aagatgagct cgattttgaa ttggaaatac       540
     gagatattgt tttcggaaaa gaagaatcca tgtgcagaaa acgtcgggct ttgagagaaa       600
     gattaaagca ggaaaagacg gagaagtcaa tggtagacta ttcgttaaaa agggatccga       660
     aaaatgaaat catagagtgt gagaacaaat tacaaacaat tgaaagtact attggaagtt       720
     caggaagaga tttaccaccc agatgtcagt ctatactact acatctgggg aataggctga       780
     gtctgttaaa gaaagtcgta gaaccctcag agcagttaca actcgaccaa attctcgaaa       840
     aggttttggc atatctggcc aaatttttct acagcaagcg tcaagatgaa gattttcggt       900
     tggacaattt gttcaaagag tcggaaatga cagcagctag tcaggtgaac aactatcaac       960
     caggaattga tgaagatgtt ttctgttcgc ttaaaagatt gggattgttg ggagcaggga      1020
     atatttcatc cgatgatgaa gttagagcag gtttgttaaa gttagaacaa gaactgtaca      1080
     gcttaagaaa gttcagagat gttcattcaa accgtcaatc ggaaaacatc atggatgcaa      1140
     ctaatcttag tatttcacct caaacaacct atacaggaac cattccgaaa caatcagggt      1200
     cagaaattcc aggattcgct aggcaggtgc ggtttaccga gactgatcca caaacagccg      1260
     tgacgcaaca aggtagttgg ataaccccga cgtgcactag ctcttgggga agttctcagt      1320
     ggcctggttc aagtagaata tcaaatgtgg gcttttcaga gttttccgga ctaagttctg      1380
     gaggctaccc ggcgatgaat acgttaacga acccaacttt atcgaacgcg gtgccgagaa      1440
     tgacctcgtc aatccgccct agtgcaagat atgatttccc atcggtccca gtggccagtt      1500
     atccaatatc atcttataca tcagccacaa cctccgtcgg acagatacca ttcttatcgg      1560
     accttcccga cgacaattgg aaagtaactc cgttcgtttc aagggagcat actttcgatc      1620
     cataccctta tgttacagct cacaatccgg ttggagcacg atttccttac tccgcattgg      1680
     atcctgtgac agaacgcaga ccaggggttc cgcaatacgc gaccccaggg gtcaaagaaa      1740
     cttcaaacca gcctgtatcg attagtaccc tcggtcaggc accgttccct atcccctcaa      1800
     tggtcacctc tagaggagtg agtagggagc cgtattcatc tcagcctgtt attgatccgt      1860
     tccagaaacc gtatggccgt aaatctttac cggtctctaa gtggaagctg gataaatatg      1920
     ctgggacaga ccaagggctt aagctcaatg agtttttgca tttagtcttt caattggctc      1980
     tatctgaaaa cgtatcagaa cctgaattat tcgactccgc ctttcatctc tttacgggac      2040
     cagcccttaa ctggtatatg tccatgaggt ctgcgagccg actagcgaat tggtctcact      2100
     tagtgacgga acttagaaag acttttgcac accccgaact agactcttta gttcgagcta      2160
     aaatatatca aagacaacaa cagcgagggg aaactttcca agaattctac tatgaaatgg      2220
     aaagcatgtt ccggtctatg atcaacccta tgaatgaatg ggaaaaggtc gacgttctac      2280
     gcaggaacat gcggactgac tataaaaagg ctctgctttg gaagcctatc gcaaacctca      2340
     ctgaactttt gaaggcggga catatgattg atgcctccaa tttttcgctg tttgctaagg      2400
     cgtttggtcc agagaaatct gctaatttcg tttcgatggg aaagccgaat agagaggaca      2460
     acaaaaatcc taatcggcct ccttcgaatc aaaaatctca agaaaagttt tattctaaaa      2520
     acaaggagat gaagactgat aatcccaaaa aagaaaatag caaaggtgaa cccaaagccc      2580
     atactacaac tacaaaacct gtaggacaag agcctccaca agaaggtgga tcaaagcctt      2640
     ccaggactct ggagtacttg attaatggct ataggccccc gcgaagctat gaatgcttat      2700
     attgtaggca gcccaatcat actttagagc aatgtcgcaa ctataaaggc ttaatgtgtt      2760
     ttgtttgtgg cttcaaagga tttgagacac agcattgtcc atactgcaaa aaaaacggac      2820
     tccagacgat cgaaaatcgc cgatcgtcga gtcctcatcc ccacgcgtaa attcctaccc      2880
     cattggaatt accccttctg aatggtggga accagtttca gaagaggcct atgaaggtga      2940
     ttcgatcgaa tcgcttacca ttgctttatc ccaacaatac gataatagac cctacgcttc      3000
     tgttaaaatt tatggcctac cctccaaagg actcttagat tcgggtagcc aactcacttt      3060
     aattagtgaa aatacctacc ataaactata cggtgttaag atacagtcta tgactagatt      3120
     tcccagggtt ctgtcagcga atggatccga acttagggta ttgggccaac tgtacatccc      3180
     gttcaatttt cgggggaaac tcaaaattat ccctactctg gtcgttcaac aactagcagt      3240
     accttgtatt ttaggtatgg acttttggcg caaatttcgt atttggccaa ccgtacagag      3300
     ctgtgcttta ggcattgccg aagacgctcc tgctgaggct cactcgagta atcttcttac      3360
     cgaccaagag atatgccata ttgacgcagt aaaaaacctc tttcgagcag cagatccaga      3420
     ggatctatcg aagacacctt tagcggaaca tcgcatcgaa attgctgatg actggaaagg      3480
     gaagccaccg gtacgccagt acccgtacac gctgtctccg aaggttcgtc aaaaagtaat      3540
     ttcagagctt gaacgaatgt tacgcattgg cattattgag cgggctcact ccgactggtc      3600
     ttccaacata gttccagtca taaagccgtc tggaaaggtc cgcctttgtc tggatgcgcg      3660
     aaaaattaat gagcgcaccg ttagagacgc ctatcccctg ccccacccgg gccgcatact      3720
     ggggcagttg cctcgagctc ggtacttgag tactatcgac ttgtcggagg cattcctcca      3780
     aatacccttg gagaaaaatt cacggcgtta tacggccttc agcgtacaag gaaaaggcat      3840
     gtttcaattc actagactcc cttttgggct agtgaacagt ccagcttctc tagcaaggct      3900
     tatggatcga gttctagggc acggcgaatt agaaccgaac gtcttcgtct accttgacga      3960
     tatcgtcata gtgacggaga cgttcgagga gcatattcgg ttgctgcgtg aggtagctca      4020
     acgtctcaaa gaagctaacc tttctatcaa tatagaaaaa tctaaatttg gcgtgaagga      4080
     gttgccattc ctaggatact tactttcgac ggaaggcctc agggccaacc cggagaaagt      4140
     acgggccata gtggagtatg aaaggccgac cactataaca aaacttcgac gtttcctagg      4200
     aatggccaac tactaccgtc gatttatcga ggacttcagt ggggtcactt cacccctttc      4260
     tgacctcttg aagactaagt ctaaaatgtt gatttggaac gaagccgcag aagaggcctt      4320
     cagtagaatc aaggaaaaat taatttccgc gcccattcta gccccaccgg attttgacct      4380
     ggagttcacg attcagaccg atgccagtga tgtggcggtg gccggggttc ttacccaaat      4440
     tcaggatgag caagagagag ttatagctta cttctcgcat aagatgacca ctccacagcg      4500
     gaactatcat gcctgtgaga aggaagcttt agctgctctc ttgtccatcg aggcatttag      4560
     gggttacgta gaaggatcgc actttacctt agtaactgat tctgcggcat tgactcacat      4620
     aatgacggcc aagtggaaaa ccgcctcgag atgtagtcgt tggtgtttag aattacaaca      4680
     ccacaacatg accataattc accggaaggg taaagaaaac acggtccctg acgcactctc      4740
     acgtagtgtg tcaaagaccg cttcagctct gaccattggt accgagcata aaattacaag      4800
     atgtccaaat acggataagt ctgatcgcct ggactcatat acaccctggt atgagcagct      4860
     gatcaatgac gtaatacaag atcctgagaa acacatagat tatcaaatac gggagggaaa      4920
     gttatacaaa tacatatcca cccccggttc gatccaggac caacggtttg actggaaaga      4980
     aattccgaca cctccagagc gattggtgat tctacaggaa aatcacgaag ggtgtatgca      5040
     tttaggcact gacaagacct tagctcgtat acgacaacgt tatttctggc ctcgaatggt      5100
     tatggaagtc agggaacaca ttcagaattg cgttgtctgc aaggaaacca aagctgccaa      5160
     tgtgtgctta gccccacctc tgggtgaaca gcggattacc agtcacccct ggcaaatcat      5220
     agctttagac tttatagggc cactacctag aagtaaaaag cagaaccaat atatattgtc      5280
     ggtaattgat ctatgtagta aatggatcat gttggtacct tttcgacgaa tagatagtgt      5340
     tgccctttgt accactctaa gggaccagtg gttctttcgg aactctgtac cggaggtggt      5400
     catcactgac aatgcgtcat attttctttc gcgagagttc cggaatctct tgcagcggtt      5460
     cgatgtgagg cactggttga attcaaaata tcattcccag gccaacccgg tggaacgggc      5520
     acaccgaaca atcaatgccg cgattcgcac atacgtgcga gaagatcaga ggctttggga      5580
     ttgcaaaata tccgaaattg aaactgtcct caacacttcc ttgcactcca caacggaaat      5640
     gaccccgtat tttagcacgc acggatacga aatgatggtc aaaggttccg atcaccggct      5700
     caatgagtcc gcgaccgttt tgtctcctga ggaaagagcc aaacaacaaa cagcaatata      5760
     tggaaaagtt tgcgatttgg tcaaggaaaa tctcactaag gcacataatg aatgtagaaa      5820
     acggtataac ttaaggcacc aaagattcgg gaaagagttc caagaaggac aattaatatt      5880
     ttaccggaac atgaaactat ccagtgcaat tgaacattac aacgccaaat atgggccaca      5940
     gtatttgcca gctcgagtgg tcaagaaaaa gggttcctct tcgtatgaac tcgaggatct      6000
     tgatggaaaa tctctcggtg tttggcccgc cgagcacctt aagtccggct gattggttcc      6060
     tttagcacaa gtaagtatag gctatccagg atcagtagta aatcgcacct caggtcgaat      6120
     acgttagaaa ctagatgaat ctgcttgttg tattcctttg ctttcaacga acgatgaacg      6180
     cccacgtaaa taatgttatg cttattgttt tcatctgtca aattattgac tgaagttggc      6240
     tgcgatgaaa acggcgaact gcacgaaagg agtgagttca cagtattttt ctactcccca      6300
     tcgtagaatt tcagggacgg gtatcgtcct aaagaaccca aaaggagtgt ggggtataaa      6360
     acgtacccaa acacccagtt aaacctttgg caaggaatat taaattgctg aatggaaaag      6420
     cagcaatcca aattcaaggc agtaggtgcc tcgaatcaaa atccgccaag tcgatatgcg      6480
     tcttgcggaa cttataggag ttacggtaat acagaacatt aataaatatg tttagttttg      6540
     gaatgcgtgt gagtgaatga atgcgtaagg gcccactgaa tgaagatgca cgataagtat      6600
     gaatggatat taggtaatat aggataaaaa atatagatta aagtctggca aagaagaggc      6660
     ataaattctt ctccaaattt aagaagtgaa gttcaattcc tttctattaa acatgagaag      6720
     gaggtcaata gcgaaaaata gtttattttc attaaaaaaa aaaaacaccg agagttgata      6780
     tcgagaaagc catttcagga gagttcattg ttcaaagaaa gtgaaggcaa actagtacga      6840
     gctttaattt acctcagatc caaaccgatc ccattatcag gaaagtccaa acggtgccgt      6900
     tattaggaag cctttttaga taaccatgaa aataatccaa taagaagcac gaaaaattaa      6960
     gtccattaga cttaattttt cctcccgcag ggagataat                             6999
//
ID   Gypsy-418_AA-LTR repbase;    DNA;    INV; 1216 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-418_;
KW   Gypsy-418_AA-I; Gypsy-418_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2020-2020 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1216 BP; 333 A; 348 C; 280 G; 254 T; 1 other;
     tgttaccgtt tacagtaaca atggatcaac tggcctgcat gtacaaatga cccaattaag        60
     actaacaccc ccaattgtga aactatgcat gtagtgcccc tcgccaatga tgtctcacta       120
     acgcataacg cctatggagg cgaattcgac gagggtaacc ccatatccgg ggcgaaaatg       180
     agaggaccag gagaaggagg aaaagaggag aggagaaagc gtcgaaggag acagtagagt       240
     gcggaccgtc acaacggcta ggtcgtggaa ttttggcttc tgataaccgg agtaaacgag       300
     aagtgcacgt gtcaaatgtg aagaaaaggt gtgaagtagc tgatcacctg agccgaccat       360
     cagccgcctt agcaagaagt ccagatacat tacaagcccg atcatccgca csattcaacc       420
     gagtagcgcc atccgttggc gtcggtcaac gatcaagttc atcctttcgt ttcggcctcg       480
     ccggcgttgc ccgacttccc cagtaggagg attcaccaga ctgcattgcg gaggtccctt       540
     cccgaaccgg ccatcgagct ccattctata ctgcttcgga aggccctaac ggtatcatcc       600
     tagatttcgg tggccaagca attctggtca acggcacctg cattccctac gaacccgaca       660
     cccaggttgg acgtgaaccc ccacgtggtc tcttaagaag gccggccaag tcgacagctt       720
     cagctgacca cccctaattc gtccaccgag ccgaagtttg gcagccacgt ggccggaatc       780
     ccggctccaa ctaagcagca gaaccataca cccacccccg cccaccattg aggattgatc       840
     acccatctct tcgtgggcct ctgaaccccg tcaagccgca gcagcatcga gaaacccttc       900
     tagaccccgt gcaaggtatg tctatgacaa gctttctccc tcctacacac gtcagcatga       960
     gctccaacac cacaatcggc cgcaacgaac taaccctaac actaacccac acaacaaaat      1020
     gaattaaaat ctaaaataaa aattaagaaa atgtatttct agctcttttg aatgataaaa      1080
     gggaaaggtc tgcatgcacg tccgttggtt ccttgtaccc tttgtccgct tctaccttga      1140
     actggtttgt gagtagcttc aagcaggtat agtgccgacc ctgagaaggc tgactctgag      1200
     ctagccactt gtcgca                                                      1216
//
ID   Gypsy-419_AA-I repbase;    DNA;    INV; 7058 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-419_;
KW   Gypsy-419_AA-I; Gypsy-419_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7058
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7058
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7058 BP; 2117 A; 1535 C; 1599 G; 1807 T; 0 other;
     attggcgatc cacgtaaata aattaaaaaa aaaatattcg tcacgtagtg ccgaatattt        60
     ttcacttgct tggggagact cacgaaaagt tgtttcgttg atgtgtcgtg gggacttctt       120
     agtgacgtca atgcagagga ctatttggaa aacggttaag gtttgtttga tccttttgct       180
     gtgctcttac cggttgaagt catcccacca gagactgtga aatctgttga attgcttcgg       240
     ttacttcaat atcattacat tatactattc gatcactatt tttcgcttta tgaattacta       300
     ttgaattttg ctgaattaat tagaagtaga ctagttgtaa gctgtaaata gtagctgaat       360
     agattaggtt aaggattctt gaattgaaaa ttgaatttaa aactgaattt gaaatggcta       420
     cgaactgcga gctcatagag gagaatctcc cgactttgtt tttcgacatt cgggtagatc       480
     atcttaatga agatgaactt gatttcgagt tggaaatacg taatatcgtt tttgaaaacc       540
     aagaatcgat gtctcggaag cgtcgtgcgt taagagagag acttaaatct gaaaaagtag       600
     aagggtataa agagaatgtt acttggaagc gagaaccgca gaacgagcta gtagcttgtg       660
     gtatcaagtt tcaagagatt gaaagcataa ttcagaactc tactagggac ttgccaccca       720
     gatgccagtc ctcgttattg catctgggaa atcgaatccg attacttaaa aattacattg       780
     aaataggtga tatagttcag ttagatgcta tgcaggagag gatattgacc tacttgagag       840
     atttctttta ccagaagcgc ccaactgaag agtacgatct aaggaatttg ttcaccgagg       900
     ggattccgcc ttataatagc caagcccctc ctgaaaatgc tgcagctgta gacggagatg       960
     ttataggctc gttgcaaaga ttggggttga tgggatctgg gaacacggat tcagagggaa      1020
     taagagatgg tttgcttaaa ttagaacaag aactctattt gttgcgtaag tttaaagaaa      1080
     cgcagaccaa gcgatcccat agcgaagccc acaatctctt ggatgcagaa gtcccttctg      1140
     taccgaatct ggtcacgtat acagggacca taccgaaagc aacattgtca ggaacaccag      1200
     cagctttgca gcacctggcc tacagggacc aggctgcatc agccctacac ccccagtccg      1260
     ttctatcgag ttccagtcta agctactggg ataggaccga gcagatggga acaaatttct      1320
     caacaagctt gggtccatca aatgagtacg tcagaaccac tctcggattc ccagccatca      1380
     atacaataac gaacccaact cctactaatt cggcccctag gatggctgcc tcaatagtcc      1440
     ctagtgctgg acatgcctgg gctccagtca catcagaaag ctacaggcct ctaccaatca      1500
     atgttacaat taattcgtcg cggctttcga ctctaccttc aagcagccag gtaccaattt      1560
     attcgggatt atcccacaat ggttggaaga tgattcccta tggggggagc gaaagggcct      1620
     accaccctca tagctcaacc tccggacaaa tttcactggc aaatctgagt ggccctctac      1680
     aacctccgac tgtttccagt acgacaggtt ggccactcat ttcaagttct ggaatagcga      1740
     cgagtgcctc tttagggcag ctaccggcca atctgatcag tagtggtccc ctatcttccg      1800
     ccgtaccaat cggttctgag ggtttgggac agggaactct gtatcctccg ctagttgtac      1860
     aggaccctac ccagagaccc tataatcgaa aatccctccc agtttcaaaa tggaagttgg      1920
     agaaatatgc gggctcagat caaggactaa agctgaatga gttccttcat ctggtttctc      1980
     agttggcgtt gtccgaaaac gtttcggaac ctgaactatt tgattcagcc ttccatctgt      2040
     tcaccggacc agcgttgaac tggtacatgt caatgagaag tacaggacga ctggtgaact      2100
     ggggacactt agtctttgag cttcgtaaat ctttcgtcca tccggaactg gactcgctcg      2160
     ttcgagcaag aatctaccaa agacgacaag ctcgaaacga aacatttcag gatttttatt      2220
     atgaaatgga gagcatgttt cgctctatga gcaatccaat gaacgagtgg gaacgagtag      2280
     atgttttgag gagaaacatg cgttccgact ataagaaagc attgttatgg aaacccatag      2340
     gcaatctgtc agaactacta gaggctggcc atttaataga tgcgtcaaac ttttcgctat      2400
     tttccaagat gtatggcaac gaaaagtcca ctaatgtggt atcattcaac aatagcaatg      2460
     aaggagaaaa gaaacaatct tttcgtccga tgaaccccaa ggcccaggag aagaactact      2520
     tcaaagacaa atctaataat tcgtcgaaga aggaaggcaa ctctaaaatt gagcccaaaa      2580
     cttcgtctag ttcgaaccaa ccaacaaaaa acgaaaatcc tggcgagggc agttcaaagc      2640
     cgaaacgaac cctagattat ttggtggatg gttataaacc accccgtgat aatgaatgtc      2700
     tcttctgtag actaaccaac cactccctcg aacaatgtcg cagccaaaga ggtcttatgt      2760
     gcctagtgtg cgggtttagg ggtttcgaaa cccaaaattg cccgtattgc aaaaaaaacg      2820
     gactacaggc ggtcgaaaat cgccgaccgt cgaacccaca ccccagcgta taaaccaatt      2880
     cccgaaagga ataaccccgt ctgaatggtg ggagccggtt tcagaagggg cgtacgacac      2940
     agattcgcaa gaatctctaa atatttccct atcacgacat catgataatc gaccgtatgc      3000
     atcgattaaa atttacggta tacctgctca agggcttctt gattccggca gtcagctgac      3060
     tcttataagc gatgagatct atcggaagtt taacggcacg aaattgcaac ctttggtgcg      3120
     acctacaaaa gtgcattctg cgaatggctc ggaacttgaa gtatcaggcc agctacatat      3180
     accttttagt ttccaaggga aattgaaaat tattcctact ttggttgtac aacatctaat      3240
     cgttagttgc atattgggta tggacttctg gcgcaaattc aaaatttggc ccacagtcca      3300
     aaattgtgct ctagttacag cggaggcttc tgcatcagac agctcctcaa ccgatctcac      3360
     ggaggcagaa aaagaacagc ttgaagaagt gaaaggtttc ttcaaagtgg ccgatccaga      3420
     aagcctttcc cttacttcct tagcggaaca ccgcattgaa attatggacg agtggaaggg      3480
     aaagcctcca gtgcgtcaat attcctaccc actgtcacca aatgtacagg aaaaggtagc      3540
     aagggaactt gaacgtatgt tgagactagg cattatagaa cgagctcatt ccgactggtc      3600
     ctctaatgtg gtaccagtta caaagccgtc tgggaaggtt cgcctgtgtc tagacgcacg      3660
     taaaatcaac gagagaaccg ttcgtgatgc ctaccccttg ccccaccctg gacggattct      3720
     tggacaatta cccaaagctc gatatttgag caccatagac ctgtccgaag cttttcttca      3780
     aattcctttg gaaaaaagtt ctcggcgata tacggcgttc acggtacagg gcaaggggat      3840
     gttccaattc accaggctcc catttggact ggtcaatagt ccagcttctc tgtcccgatt      3900
     aatggatcga gtgctggggc atggtgaatt ggaaccgaat gttttcgtat atcttgacga      3960
     tattgtcatc gttacggaaa cgttcgagga gcacgttcgg ttacttcggg aaatttcacg      4020
     gcgtctagca caggcaaacc tttcgataaa catagaaaag tcaaaatttg gcgtgagtga      4080
     gttgccattc ctagggtacc ttctatcgac cgacggtcta cggcccaatc ctgaaaaggt      4140
     aagggctata gtcgagtacg agaggccatc aacggtcaca aaattgcgtc ggtttctagg      4200
     aatggccaac tactaccgtc gctttattga cgactttagc ggggtcacct ccccattatc      4260
     agacctgtta aaaaccaaat ctaaaatcct gggttggaac gatgcggcgg aagaagcatt      4320
     tgctgcaatt aaagaaaagt taatatcagc tcccatttta gccccaccag atttcaatct      4380
     ggagtttaca ctccagacag atgccagtga cgtggcagta gcgggaattc taacccaggt      4440
     gcaaggtggc caggaaagag tgatagccta cttctctcac aagctgacaa ctcctcagag      4500
     gaactaccat gcttgcgaga aggaggctct agctgctctc ctctccatca atgcatttcg      4560
     gggttatata gaggggtcac atttcaccct cattaccgat tcctctgctt taactcatat      4620
     attaacggct aaatggaaga ctgcctcaag atgcagcaga tggtgtttgg aactgcagca      4680
     tcataatatg agtattcttc accgtaaggg aaaagagaac acagtaccag acgcgctgtc      4740
     tcgaagtatc gcggccctta ctactatcaa agaaagcaca ccagaagttt ccggtactcc      4800
     ctcactaaaa tcagatgatg ggaacactgt agacactgcc actcagtggt atgaacaact      4860
     gatggatgat gttttgacca aacctaccga atacgtcgac ttccaaatac gggacggtaa      4920
     gctgtttaaa ttcctatcat cccctgggtc gattgaagac aatcgcttta gctggaaaga      4980
     ggttccgtca ccgaaagagc gggctgggat tattcaggag aatcatgaca attctatgca      5040
     tctaggtgtg gacaaaaccc tttctagaat tcgtctacgc ttcttttggc cacgcatggc      5100
     cgttgaagtc cgcgaacata tacagaattg tcacatctgt aaggagtcca aagcggcaaa      5160
     cacagctctg gcccctccct taggtgacca acgaatcacc acgcatccgt ggcaaatcat      5220
     tgctttagat tttattgggc ctttaccaag aagcaagaag cggaatcaat acatattatc      5280
     agtggtggat ttgttcagca aatggcttat gttggttccc ttcagaagga ttgatagctt      5340
     ggccctttgt gctacgctta gagatcaatg gtttttccga aattccgtac cagaagtggt      5400
     aataacggac aacgcgactt gtttcttgtc gcaagagttt cggaggttgc tgatgcgctt      5460
     tgatatcaga cactggctca actcgaagta tcattcgcaa gccaatcccg tggaacgagt      5520
     tcaccggacg ataaacgcag ccatacgcac gtatgttcgg gaagaccaga ggttgtggga      5580
     cgaaaagctt tccgagatag aaactgtatt gaatacatca atgcattctg ctaccgcact      5640
     gacccctttc ttcactactc acgggtatga actgatgtca aaaggatccg atcaccgtct      5700
     tggagaaacc gaggactctc tatctccaga cgcaagatct gataggcaac gcgaacttta      5760
     tggtaggata cgggatctcg ttttcgaaaa tctcgctaaa gctcaccaag agtgtcaaaa      5820
     gcgatacgat ctcagacatc ggaaattcag taaaggtttc gaggtggggc agcttgtatt      5880
     ccggcgcaat atgaagctgt ccagcgccat agaccactac aacgcaaagt atggtccgca      5940
     atttttgcca gctcgtgtgc tggggaaaaa ggggacttcc tcttacgagt tagaggatct      6000
     cgatggaaag ccacttggtg tttggccggc agcacacctt aaacccgggt aggccacttt      6060
     acgttaaatc actgtcaaaa atcaacttcc caaggagttt ctggtagtaa ataggcagtg      6120
     ggaggactga aaaaaattcg aaaatgtttg aaatccttac agtttgtatc acctctgttg      6180
     gaaaaatgaa cttcttttga ttttgttttg tttacatctg gattttcgtc aaatgtcatt      6240
     tgaagacgtg cagttgtctg cgatgtcgaa ggcgaaaatc aactgtggta ttagaaccct      6300
     acaatttctc atccgggggg gtactccctc aaagcgaaaa tagattcgct acactcagaa      6360
     aaataaaatc aaaaactata ttaattttct ttaatttttc aactggccgt ggctacttgc      6420
     tacttaaaaa aaaaaggaag ttccgatagt ttagtaacta atatacaaaa aaaggatcga      6480
     gatggtattc gtctcggtga acgtccgcaa gatggaaggc gtcttcgggg aacaaggaaa      6540
     tactctggta gtttttaggt aaggtagata ggttaatagg aatgaatggg ggagtgatag      6600
     cagtatgaat gaataagggc ccaatgaatg aagaaggacg aatgggatga atgttagcag      6660
     tcagagaact aactaggaaa ggcaatcagg aaaggaagaa gatgttttcc cttagataaa      6720
     caaaaacaaa tacacagaat gtgaaattca atttctctat taattttgca aatctgaata      6780
     caaatgtaat aaaaaaaaaa aaaaacaaag cgaaaaatag ttgaactttg agtcgcgaaa      6840
     tgacgaatgg tcaactcata agcatatcag aagagttcac gtctcaaagg aggtgagcaa      6900
     accagtacga gagtttaaat gaaaccagat ccagacccgc gcccaatctg aatagcacct      6960
     cggttgctgt taataagaac cgtgcgccaa tcaaccagag caaaactgaa aaattaatgc      7020
     cttttcgcct taatttttct tccggaggag gggataat                              7058
//
ID   Gypsy-419_AA-LTR repbase;    DNA;    INV; 1343 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-419_;
KW   Gypsy-419_AA-I; Gypsy-419_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1343
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1343
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2055-2055 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1343 BP; 394 A; 369 C; 295 G; 285 T; 0 other;
     tgttaccgtt tgagataaca aaaaaacaaa agagaattgg aaatgtaaag ttgacgcatt        60
     tgtatgtctc atataactaa aatatactaa aactaaaata tataagaacg ttctttgtga       120
     gacttcgcat gcagtagccg aagggtgaga atatccaaat aatttttcaa ttatttgggt       180
     attctcgcct taaccatgta aagccactaa cgctacccac tgagctgcac ccaccgagcg       240
     aatttcacgc tgggaccact gtatccggga atcgaggcga agagagaagg agatggaaaa       300
     tgggaaagag ctggaggact aaaaaaagag aatcgggagt tagttgggta gagtctatcg       360
     tagtgagcag ttcgttcgta taccagaccg actgtgagaa acccctagga aacgccgaaa       420
     attcaagtgg tattccgatc agcaaagtgc tttgcacacg tggttcgaag ggtcgccaca       480
     aatactggtg agaagttttc caccccgccg ttgtccacgc cgcaacaacc gatccggttt       540
     atataagaag ttcgaagggt cagacagtag ccccggctcg tgcgcagaat acggccggaa       600
     gcactggtcg gtcatttcac caacggagta ccaggctggg ccagctaata gctccgcaac       660
     atcgtcaagt cgttggaacc caccagaaac cccgccaagc cacctgatcg gaccgcctga       720
     aagccccgca accacttcac gtcgtcggaa cctacccaga accccgccaa gccatctggc       780
     cgggcaagct aaaagccccg caacttcgga aagccgtcag aacctatcca gaaccccgcc       840
     aagccacgtg gtcgagccag ctgaaagccc caccactttg gccagtcgtc ggaagccacc       900
     cagaaccccg ccaagccacg tggtcgagcc agctgaaagc cccgctactt cttcaagtcg       960
     ccagaaccca cccagaacat ctttaagcca ccggagttag tcgcttccaa gcagatcccg      1020
     ccagcaccaa ccacctgttc caaaatggga cccaggtatg ttttgtacgt cgcatgtcaa      1080
     cgatgggccc caccatcacc aaacggccgc aacgtttact aaccctcata ttaaccctaa      1140
     cttcaaaatg gatttaaaaa aaataaactg gtaaaatgta tcctacgtcc ttttcaattc      1200
     tccatgaaca gaaagtgtgc atgcaattgc gtcatctctt ctttgtccag tctacatctc      1260
     ttcgttcctc tcgtgagcct tcagagcaag ttgagccgac cctgagttag aatattaaaa      1320
     ttctgagcta gtcgattctc gca                                              1343
//
ID   Gypsy-41_AA-I repbase;    DNA;    INV; 6269 BP.
XX
AC   supercont1.338;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_AA_;
KW   Gypsy-41_AA-LTR; Gypsy-41_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6269
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.338; Positions  310506  316774.
XX
CC   'GGGGGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1988..4105
FT                 /product="Gypsy-41_AA-I_1p"
FT                 /translation="MFRKIKMFVYLMYKSQFKCLHPMLLILVLSIKKICPN
FT                 NYEKIFFYIAILQMEEIRQIPPFRCETIEKGKISREWESWKWSLECYFEAY
FT                 GVTDQKLKRAKLLHLGGVDLQRIFRSLPDHDKTPLVTLEPKVYDLAIELFD
FT                 SYFQAGRQDVIERRRLRKIKQEHNEKFSHYVIRLRQQALNCGFEKYSAEVG
FT                 EILKEIYLIDVVVENCRSDELRKAILKRDRTLREIEEIAATIEDTDQQLKD
FT                 LKENGNIVRDTPVFGIDNARTVKPASKRLYLDEGNDRAPFRSFPKRSVFQE
FT                 PSRGSSFQRKEKVVCYSCGYQGHLSKSSECPAKGRTCRRCRGLDHFEAMCR
FT                 KRKQSSEVRGKPKKVFNVQHVPETNNPCDEEQEEISENSTKVYYAFYSGNE
FT                 SNTLDCVIGGFSLKVLIDSGADANLIRMETWNMMKQERIQVLKSSKGCSRV
FT                 LKGYGSDRPLSIVGTFEAKVTIGRKTTVAEFFVVKGGQKDIIGDLTAKRLG
FT                 VLKVGIEVNNVDAKVKPFSKIKDVQASISIASDARPVFQPLRRVPIPMEEA
FT                 VNRKIDQLLQRDIIEVKQGPATWVSPLVIVGKASGEPRICLDLRRVNEAVI
FT                 REHFPMPVVDEYLARLGTGKVWSKLDIREAFHQVELAEDSRDYTTFITSRG
FT                 LFRFKRLPFGLVTAPEIFQRIMEEMLSGCEGTYWYLDDIIVEGETKEIHDL
FT                 NLQKVE"
FT   CDS           4496..6244
FT                 /product="Gypsy-41_AA-I_2p"
FT                 /translation="MASAAKLGFYAVKDKTMVMADASPTGLGAVLLQENDK
FT                 GEPRVICFASKSLTDTERRYCQTEREALALVWSVERFSMYLYGKNFDLMTD
FT                 CKVLQYLFAPRSRPCARIERWVLRLQSFDYQVVHIPGPQNIADCLSRLATV
FT                 ASHAFDPEEELMIREIATMAGSAVALKWNEIKHESEKDEEIAEIIQILKSG
FT                 NQQDLPLVYRVIVNELSSIDTVLLRMDRIVIPNTLRNRVLQIGHEGHPGMK
FT                 MMKSHLRTNVWWPKMDNEIEKFVKQCKGCTLVSAPNPPEPMIRRELPTQPW
FT                 LDVAADFLGPLPEGQYLLVVIDYYSRFMEVSEMKEITASETIRELAAIFGR
FT                 YGLPTTLRTDNGPQFSERCDEFREFCDSSGITLINTIPFWPAMNGEVERQN
FT                 RSLLKRLRIAQELGKDWRIELRKYLLTYHSTSHSTTGSSPAELMFGRKIRS
FT                 KLPVVPAMALDDGEIRDRDRVVKEKGKIYADIKRKAKDSDIEIGDRVLAKR
FT                 MKKNNKLDADFSPEEFEVIRKMGADTTVRSCQSGKEYRRAVTHLKKVEVSE
FT                 SPTTSGTNNLQGTENIQGRARRNRTEPAKHKDYISH"
XX
SQ   Sequence 6269 BP; 2078 A; 1011 C; 1439 G; 1741 T; 0 other;
     attggcgacg aagataaagg taggaaaaca gttaaaaaga taaaaatagt gaaggttgca        60
     ttgtgatttg gaaaaaaaaa tcaaatttga agcgtgatct gcttcccgct atcgtatgaa       120
     aaaatggagt atcggatgaa gtgcacataa attgtggaat ttttgagtga attttacctg       180
     aattatgaat aattaattga taaatgtaac taaaatgtaa tatttccaaa tgcagcagtt       240
     tcatgcattg aattaaaaaa aatgaaatga agagaccaaa ttggtgattg agaagtgaaa       300
     aaatcagctg ttcctatggt aacagaatca ccctctacca cccacttacg tacctgagtt       360
     gatcagttga tagtatgtgt gggttaacta gaccatcatg ttgcagcaac gaaaaaaaaa       420
     aaaaatatgc cgtcttcttg ccagtacttc actgtgttgg ctatttttgt tcacttacct       480
     attccttttc aagagcaaga cttcattctc agaactgtgt tattcacgaa aaaatggttc       540
     aaaagtttgg ttttctttct aaacactatc aaaattgttg acaaacttga aggaggcgaa       600
     cggcaaatcg acagggtgaa atgttgagcc tacctgcttt tcatgcgtaa cacgttcgtg       660
     tatgtgtatt ggtgatatga atgtatgaat gacatagatt ttttttctgg agtgatgtat       720
     gtttctcctc gatctgtcat atatggactt ggttgtgttg atggtttcta aacaacatta       780
     gtcatcagaa actgtcattc atataaaata ctcaaaacaa aacagaatcg gctcggaata       840
     ctctatgaaa aatgaagatg ggtagaatca tgaatgaaag gttccgctaa ttgacaccaa       900
     gttatgtctg gaagaataac ggttgcggtt gatgaattga gatgcactgt tgaactatga       960
     acgatatatt tggctaaaat tgatttgaaa gaattgaaat ttatgcgtat taatggcaaa      1020
     gagtaaaaac aaagaaataa agcactaaaa aaaaaaaaag gttttctgat tgtttttttt      1080
     tttgtatata tatttataat cgtaaattaa acgttttatt tgtttgttgt aaaatgttca      1140
     tacgtaaatt atgtattgat attggttgaa accgcagcaa taagggatta tgacaaaaca      1200
     cttgtagcgt gttgttttgt aaattaagat gcgaaccagt agcgttcagg aatattcgtt      1260
     tgaaccagta gcgttctaag gatacaaaga accagaagcg ttcttaggat acaaagaacc      1320
     agaagcgttc ttaggataaa aggaaccagt agcgttctaa ggatacaaag aaccagaagc      1380
     gttcttagga tacaaagaac cagaagcgtt cttaggataa aaggaatcag tagcgttttt      1440
     agtatgtgtg aaaacgttga acgtcaacta gttgcgattc acaggatgta ttcgaccagt      1500
     agcattcttt ggatgcaatg aaccagaagc gttcttatga tacaatgaac cagaagcgtt      1560
     cttaggatgg tgtactgtaa gcgtgaacca ataaggattc acaggatgta ttgaaccagt      1620
     agcgttctta ggatgtaatg aaccagaagc gttcatagga tttagtgaac cagaagcgtt      1680
     cagaagcttg tatattatga accagtagcg tcataggatc aacataaaag aattgattga      1740
     gccagttgtg ttcaaggact aatgtgtata ccggtacgtt tattcttcat aattgatcat      1800
     agaatagtat ttgaaccata agcgctcgat ggatgtaatg aactaattgt gttaaaggga      1860
     tttgtgaata aaccagaagc gttcatagga tgctatgaac cagaagcgtt cattgggtga      1920
     tgttatacaa aagaatgtag ggttttattt catcacactg gtagcattac tttactgata      1980
     gggagtaatg ttcagaaaaa taaaaatgtt tgtttatctt atgtataaaa gccaatttaa      2040
     atgccttcat ccgatgcttc taattttggt attgagtatt aagaaaatat gtccaaataa      2100
     ttatgaaaag attttttttt atatcgcgat attacagatg gaagagattc gtcagatccc      2160
     accttttcgt tgcgaaacta tcgagaaggg caaaatttct cgtgaatggg aatcttggaa      2220
     atggtcgttg gaatgctatt ttgaagcata tggcgtcacc gatcagaaat tgaagcgtgc      2280
     taagctgctt catctgggag gcgtggacct ccaaagaatt tttcgcagtt tacctgacca      2340
     cgataaaaca cctttagtta cattggagcc aaaagtttac gacttggcta tcgagctgtt      2400
     tgattcatat tttcaagctg gtcgacaaga tgtcattgag agacgtagat tacgaaagat      2460
     taagcaggaa cataatgaga aattttctca ttatgtgatc cgtcttcgtc agcaagcgct      2520
     aaattgtggt tttgaaaagt attctgcaga agttggagaa attttgaaag aaatttattt      2580
     gattgatgtc gttgtggaga actgtcgatc agatgaactt cgtaaagcta tactcaaacg      2640
     agatcgtact ctaagagaaa tagaggaaat cgcggcaaca atcgaggaca cagatcagca      2700
     gttaaaggat ttgaaggaga atggcaacat tgtacgtgat actccagtgt tcggaattga      2760
     taacgctcgc acggtcaaac ctgcgagtaa gagactttac ctggatgaag gaaatgatcg      2820
     agctcccttc agaagttttc cgaaacgatc ggtatttcag gaaccatcac gaggatcatc      2880
     gttccagaga aaagagaagg ttgtttgtta ctcttgtggt tatcaggggc atctttcaaa      2940
     gtcttcagaa tgtccagcaa aagggcgcac atgccggcgt tgccgagggt tggaccattt      3000
     tgaagcaatg tgccggaaac gcaagcagtc ttctgaagta cgaggaaaac cgaaaaaagt      3060
     tttcaatgtt caacatgtac cggaaaccaa caatccatgc gatgaagaac aagaagaaat      3120
     ttcagagaac tcaacgaagg tatactatgc tttttatagt ggaaacgaaa gcaatacctt      3180
     ggattgtgtc atcggaggct tttctctgaa agttttgatt gattctggag ctgacgcgaa      3240
     tttaatccga atggaaacat ggaacatgat gaagcaggaa agaattcagg ttctaaagtc      3300
     atcaaaggga tgttcgcgag tgctgaaagg ctacggaagc gatagacctc tctctattgt      3360
     tgggactttc gaagccaaag ttactatcgg ccgtaaaacc actgtcgctg aattttttgt      3420
     cgtaaagggt ggacaaaaag atataattgg agatcttaca gctaaaaggt tgggagtgtt      3480
     gaaagtgggt attgaagtga ataatgtcga tgccaaagtc aaaccattca gcaaaataaa      3540
     agacgttcag gcttccattt caattgcctc agatgctaga cctgtttttc aaccgttacg      3600
     ccgagttcca ataccaatgg aagaagctgt gaacagaaaa atagatcaac ttctgcaacg      3660
     cgacattatt gaagtgaagc aaggaccggc cacatgggta tcgccattag ttatcgtggg      3720
     aaaagcatct ggtgagccaa gaatttgcct ggacttgcgc cgagtaaatg aagctgtgat      3780
     acgtgagcat tttcctatgc cagttgtcga tgagtacctg gcgcgacttg gcactgggaa      3840
     ggtgtggagt aaacttgata ttcgagaagc gtttcatcaa gtcgaactag cagaagactc      3900
     gagggattac acaacgttca tcaccagtcg tggattattc agatttaagc ggcttccgtt      3960
     cggattggtg accgcgcctg aaatttttca gagaattatg gaagaaatgc tttccggatg      4020
     tgaaggtaca tattggtact tggatgacat tatcgttgaa ggagaaacta aagagatcca      4080
     tgacctgaat ttgcaaaagg tagaataaaa tatctatatt gaactgtaaa aaaaaaaaaa      4140
     atatatgtaa atgtcctaat aattttttta ggttcttcag aggctcaaag agagaagtgt      4200
     agagttaaac tgggataaat gtgagttcgg ggttaacagg ttagagtttt tagggcatcg      4260
     tatttctgag gaaggtatta gtccatcgaa tgcgaaagtt aaagctgtgt tatctttccg      4320
     tccaccttgt acggaatctg aagtgcgcag ttttctcggt ttagcaaact acttgaataa      4380
     gttcatcccg gatctagcta cactagatga acctcttcgt gagcttacga agaaagacgt      4440
     gaagttcgaa tggagcgata aacacaaaga agccttcgaa gaaatcaaga aaaagatggc      4500
     gtcagcagct aaacttggct tttacgcagt aaaagataaa actatggtga tggctgatgc      4560
     tagcccaacg ggtcttggag cagtgttgtt gcaagaaaat gacaaaggcg agcctcgtgt      4620
     tatatgtttc gcgtccaaat cattaacaga tactgaacgt agatactgtc aaaccgaacg      4680
     agaagctctg gcgttagttt ggagcgtaga gcgtttcagc atgtatttat atggcaagaa      4740
     tttcgatttg atgacagact gcaaagtttt gcaatatctt ttcgcaccac gatcacgtcc      4800
     atgtgcacgg atcgaacgat gggtattacg tttgcaatcc ttcgattatc aagtagtaca      4860
     cattccagga cctcaaaaca ttgcggattg tctctctcgt ttggcaactg ttgcatcaca      4920
     tgcttttgat cctgaagaag aattgatgat cagagagata gcaactatgg caggatcagc      4980
     agtagcgttg aaatggaatg agatcaagca tgaaagtgag aaggatgaag aaatagcaga      5040
     aatcattcaa atattgaaga gtggtaatca gcaagattta ccgttagttt acagagttat      5100
     tgttaacgaa ttgtcaagca ttgatactgt gctattgagg atggatagaa ttgtaatacc      5160
     aaatacttta cgaaatcgtg tactacaaat tggacatgaa ggacatccgg gaatgaagat      5220
     gatgaaaagt catttaagaa caaatgtttg gtggccgaag atggataacg aaatcgaaaa      5280
     attcgttaaa caatgcaaag ggtgcacttt agtatcggct ccgaatccac cagagccaat      5340
     gatacgacga gaactgccga cccaaccgtg gttggatgta gctgctgatt tcttgggccc      5400
     acttcccgaa ggccaatatt tgctggtggt tattgactac tacagtcgat ttatggaagt      5460
     cagtgagatg aaggaaataa cggcttctga gaccattaga gagctggccg caatattcgg      5520
     acgttatggc cttccgacga cgctacgaac agacaatgga ccacaattca gcgaaagatg      5580
     tgatgaattt cgagaattct gtgattctag cggaataaca ctcatcaata ctattccatt      5640
     ttggcctgcc atgaatggag aagtagaaag gcagaataga tcgctactta aaagacttag      5700
     gatcgctcaa gagctcggaa aggattggag gatagagttg cgcaagtatc ttttgacata      5760
     tcattctaca agtcacagta ctaccggaag ttcaccggct gaacttatgt ttggaaggaa      5820
     aattcgaagt aagttgcctg tagttccagc catggcatta gatgatgggg agattcgtga      5880
     tagagacagg gtagttaaag aaaaaggaaa gatatatgca gatatcaaaa ggaaagctaa      5940
     ggatagtgat atcgaaattg gtgaccgtgt tttagcaaaa agaatgaaga aaaataacaa      6000
     attagatgca gatttttcac cagaagagtt cgaggtaatt cggaaaatgg gagcagacac      6060
     aacagttaga tcttgccaat ccggaaaaga atatcgacgt gccgttactc atctgaaaaa      6120
     ggttgaagtg tctgagtcac caacaacttc cggtaccaac aatcttcaag gcactgaaaa      6180
     cattcaaggt cgagcaaggc gtaatagaac ggaacctgct aaacataagg attatatttc      6240
     gcattgaatt attaaaagct aggtgggat                                        6269
//
ID   Gypsy-41_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   supercont1.338;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_AA_;
KW   Gypsy-41_AA-I; Gypsy-41_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.338; Positions  310299  310505.
XX
SQ   Sequence 207 BP; 65 A; 35 C; 52 G; 55 T; 0 other;
     tgtagggttc aaccctgggt ttgattaatg attagattat aatacgatca gagtaggcat        60
     agactgggcg aaaaaggggt ttcagttaga aacagtgtac gacagagctt ggcaggaaga       120
     ataaaaacgt agtgcgtgga acttgttgaa tagtgaattc agtggctgtc ctgcatcctc       180
     caaatctccg aatacccata ttctaca                                           207
//
ID   Gypsy-41_AnFu-I repbase;    DNA;    INV; 5884 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5884
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2925-2925 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1546..2604
FT                 /product="Gypsy-41_AnFu-I_1p"
FT                 /translation="MAGWVVEDNVEREMRKSGVAKRGKKNRKNNFLTGAWP
FT                 IKPFSEDLPIHERKAEWARFKGQYERIVQCKGQVDANTKLNGLKVFAGGYL
FT                 LKIIEMQEKRVGDSGENLYVETVKGVDEFFNGVCDETKERMKLREMKMVPD
FT                 ETFSDWILRLETQTKFCGLSDGNKTEELVQAVVRRSIPQIAEKLFEISDLL
FT                 GNDLEKLIKHGKHLDFVRMEKKEIEVNRAVNSSKESENEHLVAAVDSRKTG
FT                 KPRNEPIMQGRNSSLPTQRGNFRIWHNEGARKCLKCGKMHAWGRCSAARTK
FT                 CFRCGAIGHFAVCCKTRFGSTFSNEGAKKPRKDINQVVIDPPTNERYSEKK
FT                 KIPWQGIPSN"
FT   CDS           2608..5820
FT                 /product="Gypsy-41_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GKRERMQMSVLIYCFLLFSFVLFFSFGQIINKCTENS
FT                 EATDPRRIICSIGTVNINFLIDTGASVNTITSEDWWNIRAHSQSSVRGWQA
FT                 HPDTTLRSYGGEAVLDVECTFKAMISAGVGNKKRTMATFFVVKGAELALLS
FT                 FQTAVVLGLVYIGPQLGNKICYVEEGSNPIKDFPRLAINPVKFKIDATVAP
FT                 RQIIRYNIPKAFEKAVSERISEMEQKGIIEHVDSQDAEISFVSPMVLVPKG
FT                 NKDFRIVIDYREANKAIIRDPYPMPSLERIWSDIPNNKGKILFSKIDLKDA
FT                 YFHVELHDDVRHITSFMTAGGLMRFRRLPFGLSCAPEIFQREMEKIFRNCR
FT                 NVLVYLDDILIYARSLEELRKLENEVRQLIEQNGLTINEVKSSYGQEKIDF
FT                 LGLTLDGEGILPMREKLSAINKFDRPRDTAELRSFLGMLTFIGPFIRNFSH
FT                 KTKPLRDLIRNDGFKWEAVHQRTFEELKRIAEKDLIKRGYFNVEDRTILYT
FT                 DASPWGLGAILAQEDINTKEARIIACASKGLTEAESRYPQLHREALAIVWA
FT                 MERFAYYLLGRKFLLRSDSEALKFMIKPTKHKDIGKRIISRAEGWFLRLEH
FT                 YQFDFEYVPGKENIADAPSRLYRCKGDVQFGPNKEPHELCCVVACLDEVND
FT                 QLLALTTEEVKREFQKDATLRMVVEWLERGNGWPKQIERYQAFQKELYVES
FT                 GILMKQEKMVLPDSLRERALKVAHRSHPGMSTMKNVLRTGLWWPGMDREIE
FT                 EFVRSCQECQLLRSNSTPVPIELTELPKNPWEYVSMDISSTTENGKTLVLT
FT                 DNYSRFLVAVPVEKTDTNGIKKALNKIFLTYYVPRKMKADNGPPFNANEFK
FT                 NWLDDVWGIKLIHSTPLNPTENGLVERGMQGINRIAILARLGRKPWKDALA
FT                 EYVTDYNSWPHHVTKIPPAELMFGRAVRYRLPNPKTSSYQLNDEELRDKDR
FT                 IAKFQRNKREDAKRGAKPLSIKVGDIVLVRRENGSKTDTAYKDSLHEVVKI
FT                 TGAGRITVKEMVTGKIFDRNVKHLKKFIKRKAEEGLTGNQARELPEVAEER
FT                 AVRVIKKPKRLIEN"
XX
SQ   Sequence 5884 BP; 2065 A; 877 C; 1494 G; 1448 T; 0 other;
     ttggcgatcc tgccatgaaa atagatatgt ttgtgtgaag taaaaatgta aattcgagtt        60
     ggtaaccgag tttagctcat ggtccctcga tatgaaaaaa aaattaaatt aaacaaaaaa       120
     aaaaaataaa ttaactaaaa aaaaaaaaaa ttaagcaaaa aaaaaataat aataataata       180
     aaaaaataaa taaactaata aataaataaa taaataataa taataataat gaaaaaaaaa       240
     aaaataattc gagttggtaa ccgagtttag ctcatggtcc ctcgataaaa gtgtgttttc       300
     gagttggtaa ccgagtttag ctcatggtcc ctcgataaaa gtgtgaattc gagttggtaa       360
     ccgagtttag ctcatggtcc ctcgataaaa gtgtgatttc gagttggtaa ccgagtttag       420
     ctcatggtcc ctcgatgaaa gtgtgaattc gagttggtaa ccgagtttag ctcatggtcc       480
     ctcgaagaga gtgtgaattc gagttggtaa ccgagtttag ctcatggtcc ctcgataaaa       540
     gtgtgatttc gagttggtaa ccgagtttag ctcatggtcc ctcgaagaga gtgtgaattc       600
     gagttggtaa ccgagtttag ctcatggtcc ctcgatgaaa gtgtgatttc gagttggtaa       660
     ccgagtttag ctcatggtcc ctcgatgtga agaggaggac aaaagaatga cgagtgcgag       720
     ttagctggtc tcgataaatc gagtggtaat tagctatggt tgatgaagga gtgaaatgga       780
     aaaggtaatt cgagttggta accgagttta gctcatggtc cctcgataaa agtgtgattt       840
     cgagttggta accgagttta gctcatggtc cctcgtggaa aaaaagagaa aaaaaaaaaa       900
     aggcacaaaa ccaagtgcta gttggggagg agaaagaaag aaatgctggt tggaaaagga       960
     aaaaaaaagg cacaaaacca agtgctggtt ggtcaccgag tgcggttcag gattctcaga      1020
     aataaaggaa tactagttgg taaccagttg aaaaaaaaaa aaaaaaaggt acaaaaccaa      1080
     gtgatggttg gtcaccgagt gcggtccagg attctcagaa ataaaggagt atgagttggt      1140
     aaccagttga gtacgggctt ccgaaataaa gggagtgttt cgggggaagt cccaaactgg      1200
     cactaactgg ataagaagac aaaggatcac ggtggcgtac tcagtttcta acacggaaat      1260
     aataatgaca aataagctgg aactcatggg ggcatccaac acattggcga cataaagaaa      1320
     taacgatcac actgtgaaac tctattagga atatagcagt ttcgcagaaa tgatatcgta      1380
     ggagaatacg gatgttgttc ggttgatcgt gagcaaacat gtacatccgt gccatcgaaa      1440
     cgtgaggacc aacgttagaa tgttatagaa cgtcgagtgg acaacatcgt agaccgaatg      1500
     ctaagtgtga agttaattac gaacgcataa agcgcattaa gaacaatggc tggctgggtt      1560
     gtggaagaca atgtggaaag agaaatgagg aagagcggtg ttgcaaaacg cggaaaaaag      1620
     aataggaaaa acaatttttt aaccggcgca tggccgataa aaccgttcag tgaagatctt      1680
     ccgatacatg agagaaaagc ggaatgggcg cgtttcaaag gacagtatga gaggatagtg      1740
     cagtgtaaag gtcaagtgga tgcaaacact aaactgaatg gcttaaaagt gtttgcaggg      1800
     ggctatcttc taaaaatcat agaaatgcaa gaaaagcgtg taggagatag tggagaaaat      1860
     ttatatgtgg aaacagtgaa aggtgtcgat gaatttttca atggtgtgtg tgatgaaacc      1920
     aaggaaagaa tgaaattgag ggagatgaaa atggtgccgg atgagacgtt ttcggactgg      1980
     attttaagat tggaaaccca aacaaaattc tgtggacttt cagatgggaa caaaacggaa      2040
     gagttagtcc aggcggtggt acgacgatcg atacctcaaa tcgctgaaaa gcttttcgaa      2100
     atttcggatt tgctaggcaa cgatttggaa aagcttataa agcatgggaa gcacttggat      2160
     ttcgtgagaa tggaaaaaaa ggaaatagag gtcaatcgag ctgtgaatag ctcgaaagaa      2220
     tcagaaaatg agcatttggt ggcagcggtg gattcgagga aaacgggaaa gccaagaaat      2280
     gaaccgatca tgcaaggaag gaacagttca ctgccaacgc aaagaggaaa tttccgcatt      2340
     tggcacaatg agggtgctcg gaaatgtcta aagtgcggca agatgcatgc gtggggtagg      2400
     tgtagcgcgg ctaggacgaa atgcttccgt tgtggtgcca ttgggcattt tgcagtatgc      2460
     tgcaaaacaa gattcggatc aactttttca aatgagggag cgaaaaagcc aaggaaggat      2520
     ataaaccagg tggttattga tcccccgacc aacgaacggt attcagaaaa gaaaaaaata      2580
     ccttggcaag gtatcccttc taactgaggg aagcgtgaac gtatgcaaat gagtgtacta      2640
     atttattgtt ttcttctctt ttcatttgtt ttattttttt cttttggaca gataattaat      2700
     aaatgcacgg aaaattcaga ggccaccgat ccgcggagaa tcatatgcag tattggaaca      2760
     gtaaacataa actttttgat agatactgga gcatcagtta acacaattac atcggaggac      2820
     tggtggaata ttagagctca ttcacagtct agtgtgcgag gttggcaagc tcatcccgat      2880
     acaacattac ggagttatgg gggtgaggca gtgttggacg tggaatgtac attcaaagca      2940
     atgatatcgg cgggagttgg taataagaaa agaacgatgg cgacattttt tgtggtgaag      3000
     ggtgcagaat tagcattgct aagtttccaa acggcagtag tcttgggatt agtatatatt      3060
     gggccacaac taggaaataa aatatgttac gtagaggaag gctctaatcc tatcaaggat      3120
     tttccaaggt tagcaataaa tccggtgaaa tttaaaattg acgcaacagt tgctcccagg      3180
     cagatcataa gatacaacat acccaaggct tttgagaagg cagtcagtga aaggatatct      3240
     gaaatggaac agaaaggtat tattgaacat gtagacagcc aggatgcaga aatatccttt      3300
     gtatcaccaa tggtccttgt accgaaaggg aataaagatt tcagaatcgt aatagattat      3360
     agagaagcta ataaggctat aataagggac ccgtatccaa tgccttcatt agagagaatt      3420
     tggtctgata ttcctaacaa caagggtaaa atattgtttt ccaaaataga tttgaaggac      3480
     gcgtactttc acgttgagtt acatgatgat gttcgtcata taacttcatt tatgacggca      3540
     ggaggattga tgaggtttag aagattgcca ttcgggttat cttgcgcacc agaaattttc      3600
     caacgagaga tggaaaaaat tttcagaaat tgccgaaatg ttttggttta tctggacgac      3660
     attttgattt atgctaggtc attagaagaa cttaggaaat tggagaatga agttaggcag      3720
     ctgattgaac aaaatggtct cacaattaat gaggtaaaat ctagttacgg acaagaaaag      3780
     atagattttc taggactaac actcgatggg gaaggtatat tgcctatgag ggagaagttg      3840
     tcggccatca ataagtttga taggccaagg gatacagcgg aacttagaag cttcctagga      3900
     atgctaacat ttatcggccc atttattaga aatttctccc ataaaacgaa accattacgc      3960
     gatctgatta ggaatgacgg tttcaaatgg gaagctgtac atcagagaac atttgaggaa      4020
     ttaaaaagaa ttgctgagaa agatttaatt aagagaggat atttcaatgt agaggatagg      4080
     accatcctat acacggatgc ttcaccttgg ggtttaggag caatcttagc tcaagaagat      4140
     ataaacacga aagaagctcg cataattgcg tgtgcatcga aaggcttaac ggaagcggaa      4200
     agccgctatc cacagttgca cagagaagct ctggcgatag tatgggcgat ggagcgattc      4260
     gcatactatc tcttgggaag aaaatttctg ttgcgttcgg acagcgaggc attgaaattc      4320
     atgataaaac cgacaaagca taaggatata ggaaaaagga ttatttcaag agcggaaggg      4380
     tggtttttga ggttggaaca ttaccaattc gatttcgaat acgtgcctgg taaagagaat      4440
     attgcagatg ctccgtctag attgtataga tgtaaaggtg acgttcagtt tgggcctaat      4500
     aaagagcctc atgagttgtg ttgtgtagtg gcttgtttgg atgaagtcaa cgatcagtta      4560
     ttggcgttaa ctacagaaga agttaaaagg gaatttcaaa aggatgcaac tttaagaatg      4620
     gtagtagagt ggctagaaag aggaaatggt tggccaaagc agatagaaag atatcaggct      4680
     tttcaaaaag aactatacgt agaaagtgga atacttatga aacaggaaaa gatggtgttg      4740
     ccggattcac tgagagagag agcattgaag gtagctcaca gaagtcatcc aggtatgtca      4800
     actatgaaaa atgtgttgcg aacaggactg tggtggccgg gaatggatcg cgaaatagag      4860
     gagtttgtga ggagttgtca ggaatgccaa ttactaagat caaacagcac accggtaccg      4920
     atagaattga cggagttgcc aaagaatcca tgggagtatg tgtctatgga tatttcatca      4980
     acaacagaaa atggcaagac actagtattg accgataact attcacggtt tttggtagca      5040
     gtccctgtag agaaaacaga cacaaatggg ataaaaaaag cgttaaacaa aatattctta      5100
     acgtactatg tgccaagaaa aatgaaagcc gacaatgggc ctccattcaa cgcgaacgag      5160
     tttaagaatt ggctagacga tgtgtgggga attaaactca ttcatagtac acctttgaat      5220
     cctacagaaa atggattggt tgaacgaggc atgcaaggca ttaatagaat agcaatattg      5280
     gcacggttag ggaggaaacc ttggaaagat gcgctggcgg aatatgtaac agattacaat      5340
     tcatggccac atcatgttac aaaaattccg ccagccgaat taatgtttgg cagagcagta      5400
     aggtatagat tgcctaatcc taaaacatct tcctatcagt tgaacgacga ggagcttcgt      5460
     gacaaggata ggattgcgaa gtttcagcga aataaaaggg aagatgcgaa acggggggcg      5520
     aaacctttaa gcataaaagt tggagatata gtattagtaa ggagagaaaa cggctcaaag      5580
     acagacacag cttataaaga ttcgttgcat gaggtggtga aaattactgg tgcaggtaga      5640
     atcacagtaa aagaaatggt tacaggcaaa atttttgaca gaaacgtgaa acacttaaaa      5700
     aaatttatta aacgaaaggc tgaagaagga ttaacaggaa accaagcaag ggaattaccg      5760
     gaggtagcgg aggaaagagc ggttagagtg attaagaaac ctaagagatt gatagagaac      5820
     tgaattattg taggaaacgc gtagtattgt aatggaacag gaacttattt catcaggggg      5880
     agga                                                                   5884
//
ID   Gypsy-41_AnFu-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-119
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2853-2853 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 119 BP; 30 A; 16 C; 37 G; 36 T; 0 other;
     tgtggtatac tgggtatacc taggcgatgg tatgtgtaac tggggcagtc ttgcggtaag        60
     cgtaataaag agtagacgtg tcacaatcgt gtgtaatggt gtttctatgg gatatcaca        119
//
ID   Gypsy-41_CQ-I repbase;    DNA;    INV; 7537 BP.
XX
AC   AAWU01014757;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_CQ_;
KW   Gypsy-41_CQ-LTR; Gypsy-41_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7537
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 461-461 (2011).
XX
DR   GenBank; AAWU01014757; Positions   12934    5398.
XX
CC   Positions [3579-4100] - Reverse transcriptase
CC   Positions [5064-5540] - Integrase core
CC   'CCTG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           640..2757
FT                 /product="Gypsy-41_CQ-I_1p"
FT                 /translation="MDMAHLLSLYRGMNTGHLTVDELEHELKIRDIPFDSS
FT                 RSGAERALRNRLKEERELKHVEYELMNGSVLDELEACELKVSEIKSHLENR
FT                 KSKQAPEQSFKTRILHCVFRLERLRTYTTKDDELNSLAETARACMKLLNTF
FT                 FSISSHLPEVREAELALINQSLTDIMKKQDAEKGNGKGAEEDNESWKSTEE
FT                 NNGEEIAGIVGETGSVSGNGKGNGSGVGSGVGSGDGKSVGKPGDVERAEFE
FT                 QWKEQKVELINVVNKLLEHIQVLEAKQVEKEVEKEKPEVQAKPANSTQLGV
FT                 DTNKEKKDEGKSQQNPGDFLAWLNQRNSSLGSFGNSENEHNKPEEVHSGKD
FT                 EPKEKKTGFGRSLPVHKWTVRYDGMDNGRKLNEFLKEVEFNARSENISESE
FT                 LFQCAHHLFTRKARSWFMEVNGNNELGSWKKLVDELKSEFLPIDIDYVYER
FT                 QANNRKQMSREKFQDYYLDMVRIFRCMTNPWDEKRKFDVLFRNTREDCQIA
FT                 MLAAEIKTIPSMKEFGKRFDSVNWKLYQKGERYTPRSAHVEEVQTQRSSYQ
FT                 NTGNRYQNSNRFQGGNRSQGGYQQQNQNQQNRPYYKKNNSNGNYNQKSSWK
FT                 PEQQRQQSNGNQKENKPRVDERAQPKPNTQNRENNTAASSSGTSALQRIVK
FT                 AYIPVKRDICFNCHVAGHGHEECRQERSVFCVRCGFPGFSTKDCPYCEAKN
FT                 MQKTAQ"
FT   CDS           2889..5912
FT                 /product="Gypsy-41_CQ-I_2p"
FT                 /translation="MLVTVSNGDRRPFARVEMLGISVVGLLDSGAQRTVLG
FT                 VGGRKLVKLLSLKLKPTNIDLKTAGGESLEVIGCSDIPITFNGVTKILSVM
FT                 IAPKLNRRCILGYDFWQKFGIRPTMESVEVVDEQVDEGLEDAEEELEEEQK
FT                 KQLEDVQKMFLVASEGVVGKTDLLEHKIELKEEFIQSEPVRKNPYPWGPEI
FT                 QKKIHIAVEKMLRDGIIEPSESDWALPVVPVKKRDSEEIRLCLDARKLNER
FT                 TKRDAYPLPHQNRILSHLGPFKYLSTIDLSQAFLQVPLSEECRKYTAFSIP
FT                 GMGLFQFKRLPFGLINSPATLSKLMDKVLGFGALEPSIFVYLDDIVVASHT
FT                 FDDHIAKLTELAERLKNANLHINLEKSKFCCYELPYLGYILSREGMRPNPD
FT                 RVQAILGYEAPNSVRSLRRFLGMVNYYRRFIDKFSELTAPLTDLLKNKPKR
FT                 VVWSKAADLAFRAIKERLISAPVMANPDFKLPFCVQTDASDTAIAGVLTQV
FT                 HDGMERVIAYHSEKLKGAELNYHAAEKEGLAALRCIEKFRCYIEGTHFTLV
FT                 TDSSALTFIMRAKWRSSSRLSRWSITFQQYDMEVKHRKGKENIVPDALSRS
FT                 IETLDVGDDDNWYRNLYNAVEDDPEKYLDFRIENGKLFKFVSSKSDVLDYR
FT                 FEWKECVPESAREQVMRQEHDGCLHIGFEKCIEKLKRRFYWPRMSADLKKY
FT                 INKCDTCKETKHSTVSTEPMMGQQRVAVRPFQIVCMDYIQSLPRSKKGNAH
FT                 LLVVLDVFSKYCLLAPVRKISSASLCSILEEQWLRKLSVPQYIITDNATTF
FT                 LSKEFQDLLKRYGIQHWANARHRSQANPTERLNRTINAMIRTYVRQDQRLW
FT                 DTKISEIEFILNNTVHATTKFTPHRVVFGHEAVTRGMDHQLEDDEELTEQE
FT                 RMERMHGVNKKTYELVKENLQKAHESTKRQYDLRHKRYSPVFDVGQRVFKR
FT                 SFQQSAANKSFNAKLGPTYVPCIIVAKKGTSSYEVSDMNGRSLGVFSAADL
FT                 KA"
XX
SQ   Sequence 7537 BP; 2254 A; 1449 C; 1943 G; 1891 T; 0 other;
     cttggcgccc aactagaaat tagtttaact gtttcgtgtt tgggttcact tgaggacttt        60
     agacgatttg cccacttctc tgggaaaacg cccattattc aggtgcaaaa gttgtctaat       120
     cgtcaaaata caaacagaag tgacgctaat atttgaattt ttgagttccg aggaggggtt       180
     ttggaagtct acgctaggat gaacgaccac cagacattgg caaagtaatt ggttggagat       240
     ttcgtaaaat tttgtttgaa ttccggaata gaattcgtat cggtggagtg tcgtttcctt       300
     cggactagtt gagtgaaaac accaggcaaa gaagttattt attcaccgta caaaagtacg       360
     attacaaaag tttcgactta cactaggttt ttacaattat tcgctatttg ctcattcatt       420
     caagagcgta attcaattct aggttttttt ttcaattcat tgttgatccg ttggtgttca       480
     tcaatgaaaa gtttcattca ttaggttatc aaattatctc agttagcgaa tcaattttag       540
     gtatttttta aatttgtagt tgtgattgct catttctagt ttttttttaa atgaattttc       600
     tttttaatta caagatcttt gattttcctt gcactcaaga tggatatggc tcatttgttg       660
     tcactgtatc gaggaatgaa tacgggtcat ttgaccgttg atgaactcga acatgagctg       720
     aagatccgcg acatcccatt tgattcatcg cgcagcggag ccgaacgtgc gttgcgtaat       780
     cgcctaaaag aagagagaga attgaaacat gttgagtatg agttaatgaa tggttcagtg       840
     ttggatgaat tggaagcgtg tgagttgaaa gtgagtgaga ttaagtccca cttggaaaac       900
     cggaaatcca agcaagcacc agaacagtcg ttcaagacta ggattctgca ttgcgttttc       960
     cgcttggaac gtttgagaac atacaccacc aaggatgatg aactgaattc attggcggaa      1020
     acagctcgag cgtgtatgaa gctgctaaat actttctttt ctatttcgtc acatttgccc      1080
     gaagtacgtg aagcagagtt agcactcatt aaccagagtc taacggacat aatgaagaaa      1140
     caggatgcgg aaaaaggaaa tggaaaagga gcggaagaag ataatgaatc ttggaaaagt      1200
     actgaagaga ataatggaga ggaaattgct ggaattgttg gtgaaactgg atctgttagt      1260
     ggaaatggta aaggaaatgg tagtggagtt ggtagtggag ttggtagtgg tgatggaaaa      1320
     agtgttggaa aacctggtga cgtggaaaga gctgaatttg aacagtggaa agaacaaaaa      1380
     gtggaactaa taaacgtggt caacaagttg ttggaacaca ttcaagttct agaagcgaaa      1440
     caggttgaga aagaggtgga gaaagaaaaa ccggaagtac aggccaagcc agccaacagt      1500
     acgcaacttg gagtagacac gaacaaggaa aaaaaggacg agggtaaaag ccagcagaat      1560
     ccaggtgatt ttctcgcgtg gctcaaccaa agaaatagtt cattgggaag cttcggtaac      1620
     tcagagaatg aacataacaa accagaggaa gttcattccg gcaaggatga accgaaggaa      1680
     aagaaaaccg gatttggtag gagtttaccg gtgcataagt ggacggttcg ttatgacggg      1740
     atggacaacg ggaggaaact gaacgagttt ttgaaggagg tggagttcaa cgctcgttca      1800
     gagaacattt ctgagtccga gttgttccag tgtgcgcatc atttgttcac gaggaaagca      1860
     cgttcttggt tcatggaagt gaacgggaat aatgaactgg gttcatggaa gaagttggtg      1920
     gatgaattga agagcgaatt cttaccgatc gacatcgatt acgtctatga gcggcaggcc      1980
     aacaatcgca agcaaatgtc cagggagaag ttccaggact attacttgga catggtccgg      2040
     atcttccgct gtatgacgaa tccgtgggat gagaaacgga agtttgacgt tctcttccgc      2100
     aatactcgcg aggactgcca aatagcgatg ctagccgcag aaatcaagac gattccatcg      2160
     atgaaggaat tcggtaagcg attcgactct gtcaattgga agctgtatca gaagggagaa      2220
     aggtacacgc cgcgatcagc gcacgtggag gaggtgcaaa cacagcggtc gtcgtaccag      2280
     aacaccggaa ataggtacca gaactcgaat cgtttccagg gtggaaaccg atcgcagggt      2340
     ggttaccaac aacaaaatca gaaccaacaa aaccgtccgt actacaagaa gaacaacagc      2400
     aacggaaact acaatcagaa aagctcgtgg aagccagaac agcagagaca gcagagcaac      2460
     ggaaatcaga aggagaacaa accaagggtt gacgagaggg ctcaaccgaa accgaacacc      2520
     cagaatcgcg agaacaacac tgctgcaagt tcgagtggaa ccagtgcctt acagcggatc      2580
     gtgaaggcgt atattccggt caaacgggat atttgcttca attgtcacgt tgcaggtcat      2640
     ggtcacgagg aatgccggca ggagaggagc gtgttctgcg tgcggtgtgg ttttccgggg      2700
     ttttctacga aagattgccc gtattgtgaa gcaaaaaaca tgcaaaagac tgctcagtga      2760
     ggcgagtcag tctcacggga agctccagaa gacctcatga agataccgaa gcgtgggaag      2820
     cactccaaca gctaggatat tcgagggttg atggagaaaa gaaagaagaa gatgctgaag      2880
     tggcaacgat gcttgttaca gtgagcaacg gcgatcgtag gccgtttgca agagtggaaa      2940
     tgttgggaat atcggttgtt ggacttcttg atagtggtgc acagcgcaca gttttaggtg      3000
     ttggtggaag aaagttagtg aagttgttaa gtttaaagtt gaaacccacg aatattgatt      3060
     tgaagacagc cggaggtgag agtttagaag tgattgggtg tagtgacata ccgattacgt      3120
     tcaatggtgt tacgaagatt ctgtccgtga tgatcgcgcc gaagctgaac aggaggtgca      3180
     tcctcggcta cgacttctgg cagaaattcg gcatcaggcc aacgatggaa tccgtcgagg      3240
     tggttgatga gcaggtcgat gaaggtctag aagacgcaga agaagaatta gaagaagagc      3300
     agaaaaaaca gttggaagat gtacagaaga tgtttctcgt tgccagcgaa ggagtcgtcg      3360
     gaaagacgga cctgctggaa cacaaaatcg agctgaagga ggagttcata caatccgaac      3420
     cagtccgaaa gaatccgtat ccgtggggcc cagaaataca aaagaagatt catatagctg      3480
     tggaaaagat gctccgggac ggaatcatcg aaccgtcgga gtcggattgg gcgttgccgg      3540
     tcgttccggt caagaagaga gacagcgagg agatcaggct gtgtctcgat gctcgtaagc      3600
     taaacgagcg caccaagagg gatgcgtacc ctctgcccca tcagaacaga atattgagtc      3660
     atctggggcc gttcaagtac ctgtccacca tagacttgag ccaggcgttc ttgcaggtgc      3720
     cgttgagtga ggagtgcagg aagtacaccg ctttctccat tcccggaatg ggattattcc      3780
     agttcaagcg acttccgttt ggactgatca acagcccggc aaccttaagc aagctcatgg      3840
     acaaagtctt aggattcggg gcacttgagc cgtccatttt tgtctattta gatgacattg      3900
     ttgtggccag tcacacgttt gacgaccaca ttgcgaaact gacagaactt gcggagcggt      3960
     tgaaaaacgc gaatttgcac atcaacctcg aaaagtccaa gttctgctgc tacgaattgc      4020
     cgtacctcgg ttacatcctg tcgcgagaag gaatgcggcc taatccagat agagtccaag      4080
     ctatcttagg atatgaggcc ccaaactcgg tcaggtcgct gagacgattc ctcggtatgg      4140
     tcaattacta ccgtaggttc atcgataagt tcagcgaact tactgcgccg ctcacggact      4200
     tgctaaagaa caagccgaag cgagtggtgt ggtccaaagc agcagactta gcttttcggg      4260
     ccatcaagga gaggctgatt tcagctccag tgatggccaa tcccgacttt aagctaccgt      4320
     tctgtgtcca aacggacgca agcgacaccg cgatagccgg agttctgaca caggttcacg      4380
     atggtatgga gagggtgatc gcgtatcact cagagaagct gaagggtgct gagttgaact      4440
     accatgctgc ggagaaagag ggtttagctg ctctccgttg catcgagaag tttcgctgct      4500
     atattgaggg cactcatttc acgctggtga ccgattcatc cgcgctcacg ttcattatgc      4560
     gggcgaagtg gaggtcgtcg tcgcgtctga gtcgttggag cataaccttc cagcagtacg      4620
     acatggaggt gaagcacaga aagggaaagg agaacatcgt acccgacgcg ctgtcgcgtt      4680
     cgattgagac gctcgacgtg ggcgatgacg acaactggta ccggaatctg tacaatgctg      4740
     ttgaggatga tccggagaag tatctggact tccgcatcga gaacgggaag ctgttcaagt      4800
     ttgtgtcgtc caagtccgac gtgctggact acagatttga atggaaggag tgtgtaccag      4860
     aatcagcacg agagcaagtc atgcggcaag aacacgacgg ctgcttgcac ataggattcg      4920
     aaaagtgcat tgagaagctc aagaggaggt tttactggcc tcgaatgagc gcagacttga      4980
     agaagtacat caacaagtgc gacacttgta aggagacgaa acattcgacc gtgtctactg      5040
     agccgatgat gggacaacaa cgagtagcgg tcaggccatt ccagattgtc tgcatggact      5100
     acatacagtc gcttccgcgt agcaagaaag ggaacgcaca cttattggtc gtcttagacg      5160
     tcttttctaa gtattgcctt cttgctccgg tccggaagat ttcgtctgct agtctgtgta      5220
     gcattctgga agaacagtgg ctgcgaaagt tgtctgtgcc ccagtacatc atcaccgaca      5280
     acgcaactac gttcctgtcg aaggagttcc aggacctgtt gaaacggtat ggaatccagc      5340
     attgggcaaa cgctcgtcac aggagccaag caaatcccac cgagcgcttg aaccgtacga      5400
     tcaacgcgat gatccgcacg tacgtccggc aagatcaacg gctgtgggat actaaaatct      5460
     cagagattga gttcatcctg aacaacacgg tccacgcaac aacgaagttt acgccacaca      5520
     gagtagtgtt cgggcacgaa gcggtgaccc gaggaatgga ccatcagctc gaggacgatg      5580
     aggaactcac cgagcaagag cgtatggaac gcatgcatgg agtgaacaag aagacctacg      5640
     agctggtcaa agagaacctg cagaaggcgc acgagagtac gaaaaggcag tatgatctga      5700
     ggcacaaaag gtactcaccg gtgttcgatg ttggacagcg cgtctttaag agatccttcc      5760
     agcagtcggc ggcgaacaag tcctttaatg ccaagcttgg gcctacgtac gtcccgtgta      5820
     tcatcgtcgc gaagaaggga acgagttcct acgaggtgtc cgacatgaat ggtcgctcac      5880
     tgggagtctt ctcagcggcg gatttgaaag catgatctct gaaagaggga catggcttag      5940
     ttcgaggaca gaggttcatc tgagaggagg tcaaggtcga tatagatgtg attccgcaaa      6000
     ttcattcatc aggagttctc atctaagtcg ccttgcgcaa tccacagcgc atgaatgaac      6060
     cgagtgtcac tcatcaatgg gttcattgac acatgaacgc ccacgcatcg caagcaccag      6120
     tatggaaaag tgcatcctag gaaatcattg atcaaatttt aagtgaaagt tttaaagtgt      6180
     cgtaattgag tgttattttg tgtttgtgaa tcaattttat gttttatcgg tgcacaatgt      6240
     tccattcatc tctcaggcaa cattatcaag aatatttcta aagttgcact acgagaaggg      6300
     aatgtggaag gaaaattgca tcggagttca aagtgtgtgt gaaagaacaa gttaatgagt      6360
     cgtgaagagt gagcaaatga gttggctaac catgaagttg caagaagatt tttgtcatat      6420
     accatgcatc actatttagc tttttcaatt tataactagg attttttcgc ttaatttttc      6480
     acctagtgga cgcacttccg tgaaatttga gcacttcata cttaccaaaa gcatagcatt      6540
     caaaattcat atcagagcat attgcatctc tgatgagctt gtttgtgaga tatgggattt      6600
     ttggggtaga attggggaat aaaacttcaa atgattatat aggtaccttt ttaaactgat      6660
     acgtatcagg aaaataataa ataaattccc atttctacac aaatcgccga ttttctcaca      6720
     aacaaccgca tcgcgatctt gcacaggcca catttttatc accaatagta gtttgacagg      6780
     ttcaggtcac tcagcaaacc cgaagaagca gcacacacac tgatacgaat gataacgata      6840
     aggattatag cacgaattgg ttcgataaag gagatctccg acactcacgt agtgaattat      6900
     ttcaaccgtc gcttgatgcg aataggtttt tgatcgcgat atttgtttga atttgtttat      6960
     tccggaatat aattaattta ttaccatggt attatttgta atttgcatgc agcataaaat      7020
     ttgaaaatca aaaaaaaaat ttaaaaaaaa tcaaaattta taaaaatttg catgcttgag      7080
     tataatttta atttgtaaat attttaattt gttatttatt tatttattta tttgacttgt      7140
     aaatattgta atttaaatgt tgtcaatgtc ggttaatata tcaagaatgg agatcgctgg      7200
     agaccggagt tgaaatatac gttgatggtc agtaacaggt ttcggccttg aaactgagag      7260
     gagtcgactt aggttgacga tgataactta tgaccccgcc cattaccctt gatataagtg      7320
     ttgttaactt gtgtattctg acttgactta gtacaacgga ctcaattttc aaatatttct      7380
     ggttactttg agttaaaaca acgatgtgca gtcaattctt agttcttgtc tcgtggttca      7440
     gaggtaagcg gttcgtatat agtgctcagt gcaaaacgaa aaatgttaga aaaaaaatat      7500
     tagttctaat atttttttta cccgagcgag gggagag                               7537
//
ID   Gypsy-41_CQ-LTR repbase;    DNA;    INV; 1224 BP.
XX
AC   AAWU01014757;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_CQ_;
KW   Gypsy-41_CQ-I; Gypsy-41_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1224
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 462-462 (2011).
XX
DR   GenBank; AAWU01014757; Positions    5397    4174.
XX
SQ   Sequence 1224 BP; 301 A; 325 C; 378 G; 220 T; 0 other;
     tgtaacctat ggtatttgca tcccaagatt agtgcgatcg tttgttccgc ggcacgttac        60
     ggagggagca cttgagcagg cttgcgggca gaacgaccta ctagcgtagc tgtccagccc       120
     ctacggacgc taccaaagct gcaccgctag ttgcgctagt caccgccagg agcgcacgag       180
     atcatcgcaa acgcccgcct tgggtagcgg cgatgaccag gacgatggga cgatgggacg       240
     aaggaggcca gaagggggag gttgaggatc gctgggaaaa ccccgccatt gcaacggtca       300
     ctttgcctgg tatcttgaag agaacggtcg atatccgtga aaatcaccgt cacgaaagag       360
     tgaagtttag aagtgaagtg gaagatccgg tagacgccat cccggagaaa agccgcccga       420
     cgatctagag atccggacgc aagcaggagg agcctgcgtt gatttgtgga catccagaac       480
     ccctcggtgt tcgtacgctt cgcgtacagg ccggcacaga cgcatacgtc cgccgtaagc       540
     cacccgacac ccgcggtatt ccccgcgcgg tacatcgtac cgccgagcac gatcgctcac       600
     gcacgaggat cgcccgcgac accgttccgg tgtgggaacc gccctcgcga cgccgccatt       660
     ttggtcttct gaccaaccgt cgcgagataa gacgccagcc tcgccagccg ttataccaac       720
     cgacgccgga aaccaggcag accggtagat tcatctaccg aggtcccaga gtccgtcacc       780
     atactcggga gcgtcgaggc aggtggcgca gaagagggtc gagtacgaga gcagcagctg       840
     accgcccata gtggtcgcac aacgagagag gtagacgtgt cccgccccgg tagaccgagt       900
     cccggaggtc ggtggaggcg tgtagccgtt gttcgaggaa cgcgagctga gagtgagcgg       960
     aagcagcagt tccggaaagg gcccgaagaa gaaggaagaa ggacgtgtga ggtaggatta      1020
     gctagtaagg aagtgggaga actaggaagt gaggtactta cgcagcttga gtctgccaat      1080
     aaatcgctag taacctgaat aaagtgggtt tgttttgtct aatagtctaa ttaagtgttt      1140
     ccctaccgat tccggattaa catgccgacc ctgaggcaaa gaggggggtc tcattaatgc      1200
     tggagtagcc caccattagt taca                                             1224
//
ID   Gypsy-41_DAn-I repbase;    DNA;    INV; 5972 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_DAn_;
KW   Gypsy-41_DAn-LTR; Gypsy-41_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5972
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 315-315 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3230-3733] - Reverse transcriptase
CC   Positions [4832-5317] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1587..2489
FT                 /product="Gypsy-41_DAn-I_2p"
FT                 /translation="MGLPTQLPHPNHYEVRPDRISQIMANWKLRFTGRSSM
FT                 SAEDFIYRVEALTIQTLEGDFNLTAKYASNLFEGSASEWFWRYHKSVTVLT
FT                 WPGLCQALRGQFSDDRTDRSIRSEIEHRKQRHNELFDDFYGVIAALADKLS
FT                 NPLSEASLVETLRYNLLPEIQHEILYVPTTTLKELRTVVRTREMFLRTVSK
FT                 PNPLSTSRPTPRRQVNSLQNPEVAPSSDEDSGQDEYELSVLEVSCWNCSAK
FT                 GHRYQECLADRKIFCYGCGKADTYKPTCRTCNPNAQKNYQGRAPQKSARKQ
FT                 LISRATNTE"
FT   CDS           2693..5686
FT                 /product="Gypsy-41_DAn-I_1p"
FT                 /translation="MLCGKSVVGLMDTGASVSCIGGRFANDLLQENLKYKL
FT                 MTSKIKTADGKSQTIVGKFSTDITYRGETKTLYFYLVPTLVEDLYLGIDFW
FT                 TAFDLLPMHLLTKNHNLASISDPSMRELSKDQQNSLQNVIKLFPSFSKQGL
FT                 GRTSLISHSIDVGEAKPIKQRHYAVSPAIEKLMYDELDRMLELGVIQESNS
FT                 SWSSPVVLVKKPGKVRLCVDSRKVNSVTVKDAYPMPIIDGILSRLPKAEFI
FT                 TSLDLKDAFWQIPLDPKSRDKTAFSVPGRPLYEFVVMPFGLTNAPQSMSRL
FT                 MDKIVPAYLRNEVFIYLDDLLIVSDTFERHLEVLSVVASNLARANLTINVE
FT                 KSKFCRKEVKYLGHVIGNGIISTDPDKIAAVRDYPTPRSVKQVRRFLGMTG
FT                 WYHKFIKDYSAITSPLTDTLKTNRKFEWTSEAQGAFESIKASMCAAPVLHS
FT                 PNFSLPFSLHCDASHTGVGAVLMQVNKDGAEVPIAFMSKKLNRCQRQYTVT
FT                 EKECYAAVLAVKKFRAYVEGQDFVIVTDHASLKWLMAQADLSSRLARWSLK
FT                 LQGFQFKILHRKGTHNVVPDALSRTFTEDLSTLACDSLIVDVNSTEFDSTE
FT                 YDSLRSKIRLNSSSLPDLKIQGKHIYRRSEHAEDTKISDDQCWKLWVPRPL
FT                 VPNAIKTAHGDPLHAHGGINKTIERLRRYYFWPNMVNDVKTFVNSCDICKA
FT                 TKHPNRSFKPPMGNTGIPQRFFQKIFVDFLGPYPRSKSGNVGIFVVLDHLT
FT                 KFPFLKPVRKFTADSIVRYLEEDLFHCFGVPEYVVSDNGVQFKSQTFNCLL
FT                 NKYNIRHTYTAFYSPQANASERVNRSVLSAIKAYINPNQSNWDENLSSINC
FT                 ALRSGVHLAINTSPYKLTFGQHMVTNGETFQLLRDLGMLEDRSVQFNKEDS
FT                 LDILRSKAQKTMIAQRNRNEKFYNTRTRDVSFKVGQEIFRRNFQQSNFAKG
FT                 FSSKLAPNFLKARVRRKLGKVYYELEDLQGRLIGNFHAKDIKP"
XX
SQ   Sequence 5972 BP; 1860 A; 1286 C; 1191 G; 1630 T; 5 other;
     atattattta agatggcgcc caacgtgggg ctagccgttt aaggctgccc aggaaaataa        60
     aatgtacaaa aattaaaata tctatgtcat tccatccgac atataccctc gtacgtatta       120
     gttagtttcg gatgccactt cggatccaag aaattctcat agacttcaag gccaagtgtt       180
     taactccgat aactagatac tgtggttaag cttcgactac ctggatgcgt tacatcttta       240
     attggatata actccggagt catcgcggct taacctagtc cggtgtttag gcagggctgg       300
     taaagtttaa gcgcaattga attggcggat ttcaagccgc agtcatccct taaaatttcc       360
     atcctgtgct gttctccgtt gtggttgaga gataaatctg aattggaaaa tatctttgtc       420
     tgatgcaggc gcctttccaa cagaatatcc tctctaacct aatcctctgt tgtggctcga       480
     agagtatacg gactaggaat atatcttttt ctgatagaga cacttttcca accgaatact       540
     taatggccat ggctcaatcc ttatattcaa agccttgtaa atacttctgg aagatgtcca       600
     atgattcgga agatgggccg ccgaagtttt acgaggttaa cgattataaa aagaattagg       660
     atcttgcaac actttcgttc atataaagac aaaaatacaa attaattcct atcagccaga       720
     agcagaatgc atgactccta gattttgttt tgaaattttt gactcctaga ttcatatatt       780
     cttanatttt tanctctata aattcattct atgaantttt atttttataa atttattcta       840
     tgaagttgaa gacagcatat tccacatagt aggttagaag taaacttaaa ttaaaaaaaa       900
     aaaaaaagaa aaattattag gtaaacaaat tatacttagg aaaccccgaa atggtgttat       960
     cccatagcac ggagaatttg tctcaaacga gtgatacagg agaacattgt ttcatttgct      1020
     ccgaaataat agtttaccaa gcgcaattat tatctacatc ttgtgggcat atctttcacc      1080
     gtgcgtgtta caattccaaa gtaggaaagt caaaaaagtg tcccgtctgt aagcaggaac      1140
     taacgcaatc taattcggcg tctgtggaaa accttagttc agatcgatta tccactacaa      1200
     gctccatcat ggcttcaaca tctcaatccc tacagactcg acttcaaaca aaacgaatgg      1260
     ctgccgtaca acagtcagag gttcctaatt cagactcgaa taatatggtt cagactatca      1320
     ccaaccaacc gcaagaaccc accaatacgg ctgaaacggt accttcaact cttgccgaag      1380
     caataaaagc agccatgata gaacaaactc agatgatagc ttctagctta accgatcaga      1440
     ctaacaagat tattcaagca ctctcaggtt gtcttcgtga tagtagttta gcgggttcag      1500
     ccaatgaatc tccatctagt aggcaaacga gggcacaatc gggtttgcca ttncagaatc      1560
     caccggaaac aagatcggaa ccttccatgg gattaccaac tcagttgccg catcctaatc      1620
     attatgaagt acgacccgat cggataagcc aaataatggc aaattggaaa ctcagattca      1680
     ctggaaggtc ttctatgtca gctgaagact ttatctatcg tgtagaggct ctgacgatcc      1740
     aaactttaga gggggatttt aatttaacgg ccaaatatgc cagtaatttg ttcgagggta      1800
     gcgctagcga atggttctgg cgatatcaca aaagtgtcac tgtacttact tggccaggtc      1860
     tgtgtcaggc ccttcgtgga caatttagcg atgataggac cgataggagt attaggtcag      1920
     aaatagaaca ccgcaagcaa cgtcataatg aactgtttga cgatttctat ggtgtcatag      1980
     cggccctagc cgacaaactt tcaaacccat tgtctgaagc ttccctagtg gaaacattaa      2040
     gatataattt gttgccggaa attcaacatg aaatattgta cgtccctaca actactctca      2100
     aggagttaag aacagtggtc cgcacaagag aaatgttctt aagaactgtc tcaaaaccga      2160
     atcccctatc gacttctcga cccactccta ggcgacaagt caattctctt cagaacccag      2220
     aggtggcacc ttcatcagat gaggattcag gtcaggacga atacgagctc tctgtgcttg      2280
     aggtttcctg ctggaattgt tccgctaaag gtcacagata tcaagaatgt ctggccgatc      2340
     gaaaaatatt ttgctatggt tgtgggaagg ccgatacgta taaacctaca tgtcggactt      2400
     gtaacccaaa cgctcaaaaa aactatcaag ggcgtgcacc acagaaaagt gcacgcaaac      2460
     agttaatcag cagagcgacc aatacagagt aacactttcc gacgacccca tttctgtagg      2520
     ccccctaccg caacctaaat gtataccatt ccctatatct aagatagacg ttaagagaaa      2580
     acggtctact ggtcgtcgag aagcttttaa aaaacaatgt aaaatagaaa agaaattaat      2640
     cctttcatcc atattagata atcctcttga cttacgtcct cacgctcaag tgatgctttg      2700
     tggaaagtct gtagttggat taatggacac tggtgcttct gtaagttgca taggtggtag      2760
     gtttgcaaac gatctacttc aggaaaacct taaatacaag ttaatgacct ccaagatcaa      2820
     aactgctgac gggaaaagtc aaactatagt cggaaaattt tcaactgaca ttacttaccg      2880
     aggagaaaca aaaaccttgt atttttattt agttcctact ttagtcgaag acttatatct      2940
     gggaattgac ttttggaccg cctttgactt actcccaatg catctgttaa ccaaaaatca      3000
     taatctagcc tccattagcg atccaagtat gagagaactt tcgaaggatc aacagaattc      3060
     attgcagaac gttatcaaat tattcccgtc attttctaag cagggactag gacgtacatc      3120
     gttaatttca cactcgatcg atgtgggaga agctaaaccg attaagcagc ggcattatgc      3180
     cgtgtcgccg gcaattgaga aacttatgta tgacgagctc gatcgaatgc tcgaattagg      3240
     agttattcaa gaatctaaca gctcttggtc atctccagta gtgttagtga agaaaccagg      3300
     aaaagtaaga ctctgcgtag atagtaggaa ggtgaattcc gtcaccgtaa aggatgcata      3360
     tccaatgcca ataatcgatg gtatcctaag tagattgcca aaagccgaat tcattactag      3420
     cctcgattta aaagatgctt tttggcaaat accgctagac ccgaaatctc gcgataaaac      3480
     ggccttctca gtacccggac gtccgttgta tgaatttgtg gtcatgccct ttggcctcac      3540
     taatgcgccg cagtctatgt cgcgacttat ggataaaata gttccagcct acttacgtaa      3600
     tgaggttttt atatatttag acgacttact cattgtctcc gataccttcg aacgacatct      3660
     tgaagtctta tcggtagtcg cttccaacct ggctcgtgcg aatcttacaa ttaatgttga      3720
     aaaaagtaaa ttctgtcgga aagaggtgaa gtacttagga cacgtgatag gtaatggtat      3780
     tattagcacc gatcctgata agatagctgc agtcagagat tacccaacac cccgttcggt      3840
     taaacaggtt cgaagattcc ttggaatgac cggatggtat cataagttca ttaaggatta      3900
     ttccgctatt acttccccgt tgacagacac cttgaaaacc aatcggaagt ttgagtggac      3960
     aagtgaagcc cagggggctt ttgagtccat aaaggcaagc atgtgtgcag ccccagtact      4020
     gcacagtccc aatttttcgc tcccgttctc acttcattgc gacgcaagcc acacaggagt      4080
     aggtgcagtc ttaatgcaag tgaataaaga tggcgcagag gtgccgatcg ctttcatgtc      4140
     aaagaagcta aatcgttgtc aacgtcaata caccgttacc gagaaggagt gctatgccgc      4200
     tgtgttggcc gtgaaaaaat ttagagctta tgtcgaagga caggatttcg taatagttac      4260
     agatcatgcc tccttaaaat ggcttatggc ccaggcagat ctaagctcgc gtctcgcccg      4320
     ttggtctctt aagcttcaag gattccaatt caagatactt catcgaaaag gtactcacaa      4380
     cgtagtcccc gacgctcttt cgcgaacctt taccgaagac ttgtcaaccc ttgcttgtga      4440
     tagtctaata gttgacgtca attccaccga attcgattca accgaatacg attcgcttag      4500
     gagtaagatc cgccttaata gctcttccct accggatctc aaaattcaag gtaaacatat      4560
     ataccgacgc tccgaacatg cagaggatac caaaatttcc gatgaccaat gctggaaact      4620
     ttgggttcca cgcccactcg taccgaatgc cattaagact gctcatggag acccattaca      4680
     tgcccacgga ggtataaaca aaaccataga aaggctccga cgttattatt tctggcctaa      4740
     catggttaac gacgtaaaaa ctttcgtcaa tagttgtgat atttgtaagg ccacgaaaca      4800
     ccctaatcga tcgtttaaac ctcctatggg aaacactgga ataccccagc gtttctttca      4860
     gaagatattt gttgactttt taggacccta tccacgcagt aaatcgggaa atgtaggtat      4920
     atttgtggtg ctcgaccatc tcactaagtt tccttttttg aaaccagtcc gcaagtttac      4980
     cgccgactcg attgtgcgat atttggaaga agatcttttt cattgttttg gggttccaga      5040
     atatgtggtt tccgataatg gagttcagtt taaatcgcaa acttttaatt gcttgttaaa      5100
     caaatataat atcagacata catatacggc cttttattcc ccacaggcaa acgcgtcgga      5160
     aagagtgaat agatcagttc tttcagccat aaaggcttac ataaacccaa atcagagtaa      5220
     ctgggacgaa aaccttagta gcatcaactg cgctctacga tcgggagttc atctggccat      5280
     aaacacnagc ccgtataagc taacgtttgg tcaacatatg gtcacgaacg gcgaaacttt      5340
     tcaactacta cgagatttag gtatgctaga agatcgaagt gtccaattta ataaggaaga      5400
     ctccctagac attttacgca gcaaagccca gaaaaccatg atagcccaac gcaatcggaa      5460
     tgaaaagttc tacaacacac gcacaaggga cgtttctttt aaagtaggtc aagaaatttt      5520
     ccgacgcaat ttccaacaaa gcaatttcgc aaaagggttt agctccaagc tggctcccaa      5580
     tttccttaaa gcgcgagtgc gaaggaagtt agggaaggta tattacgagc tagaagatct      5640
     acaaggccgc ctgatcggaa atttccatgc caaagatatt aagccataag cgtagacaac      5700
     aagcgggaat cttccttgtg ttgttccacc ccaagttaga ttttagtggg ggggaaaatg      5760
     taatgcgctt gttgtaactt aacaacaaac caaatgccta aaagtaaacc tcatttagtt      5820
     aagcttggaa taaccgaaaa tacaaaacaa aaaacaaaaa gcttggttaa gcttaaagtt      5880
     ccttatctat tgataatcaa ttatctacct agaattgagc atttaagtat cggtctaagc      5940
     atagaataag cagcggccaa cttcttttct ct                                    5972
//
ID   Gypsy-41_DAn-LTR repbase;    DNA;    INV; 2049 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_DAn_;
KW   Gypsy-41_DAn-LTR; Gypsy-41_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2049
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 316-316 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2049 BP; 672 A; 386 C; 331 G; 660 T; 0 other;
     tgtggctgct aagataagcg catcgctcgc ggttaaactc cagtatatat ttaacccccg        60
     gaaaaaaaaa gacacgtggt ggggaatttc cacataagtt tcccaaaact aaacgcagag       120
     ggaagtgagc agcgctcagt gtattaaaag tgaattacat ttttgcggtg ccaattcaag       180
     gtaaataaaa cctttgtttt cggcctcacg cgtttttttt taattcgact tatttttttt       240
     aggtcgaatt ggcacccagt aagaacccat ttgtgtattg ttcttacatt gggaataagt       300
     ttacaatccc ccaagcagcc agtttaccct aagaagggct tccagcgcca cgccgcggga       360
     tctgatggat ttattataaa ttagtgtgag agacacaatt ttcttttggg attaaggtgc       420
     atgtgcaata attttccctc attaattaaa acccgccaat ggccagcata tgcacccgaa       480
     ttattctcat ccaatgacgt cactcatcgc cccaagacag ttacgcctgt cccgtattgg       540
     tttccggaat tattaatttg atttagctat ttttattttg gtagtattta gttttttttg       600
     gagcttggag tttaataatg taagaaaata acgtttccag ttcccttaat tttgtatttc       660
     ttttttatta cttaaatact aaaactgaac ggtatggaaa tattaattag tttggtgaat       720
     atatatatat atacatacat aaaaataacc tctatgccct aaaattatag attcatcgct       780
     caacccgaca aaagatcttt tggacgtgga aattaaactc gatgtaagtg aaaaaaaaaa       840
     ctcattaccc caaattaaat attgttggtg gttaggctga tttttctcag tgtaataaaa       900
     gctttacctg aaagattttt atctcccata cggtaaaatc gaaccacgcg gttgcaatta       960
     aataccgaac aacggtacac tgaaagaaaa gaaagaaaaa ataaaaacga aaatttttct      1020
     ggcacgtgct ggctaacagt tgattatata tatatatttt cctttttttt tattcccaat      1080
     atttaataat ggccttccgc aatgacaaca aagaaaaatg aattacattt cttttcttaa      1140
     attaattaat aaatatttaa taaaaattaa tggaatcttg gaacattatt tttaatactc      1200
     ttgccgtgtt ccaacattaa aaaaaaaaaa aaaaaaccct tgctaaagtt aatcataaac      1260
     ccttgctatc aaatttgaat tgaaaatgaa taagttacta tggagacatt ttacgatata      1320
     catttaggaa ataatattag agaatacccg ctatggaaga caagattctc ttcataaaca      1380
     tgattcttga tattaatttt atatagacat atataatatt attgcctatt aatgcgactt      1440
     attatttctt ataccaactt ataaagatat aaattctaag ataatttgtt ttctcgatta      1500
     taactatcta atagatacat ttaattatat acttgattta aatttccttc ttttgcctta      1560
     tgcaacttaa taaccatgaa taaattttat aacgtttaaa aatgaattgc taatctatta      1620
     tctggaggag tcatgcagga tgaagatggc aggtgaaatt aaatagccgg attttctttg      1680
     ggatcatcaa taattatttc gcggacttgg tgatcatgga agggtgggca acggctgtgg      1740
     caaaacatcc gctcagcttt acgtcgtctg ctgcaactcc accagcgcag tcgcaacggc      1800
     cttaactact ctgaatgtcg aaagcaatgc aagaatcctt ttcgtcccct ttcccgatat      1860
     ttccttcagt acgtactaac ccccccccgc acgcgaatat cttttaaata atcgattgat      1920
     aactgcgagc gagtagcaca aggaccctag ggatccactc ccttctaccg accaaaaagc      1980
     cggaaccagc gcgtgcaacc tccttgcagc tacacaacca tctgcccgct tacatggtta      2040
     catgttaca                                                              2049
//
ID   Gypsy-41_DEl-I repbase;    DNA;    INV; 7400 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_DEl-I.
XX
NM   Gypsy-41_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7400
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 481-481 (2012).
XX
RN   [2]
RP   1-7400
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..1780
FT                 /product="Gypsy-41_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MANPNLNIPPGPQQSAGSSINLNTPLPPLINLFNQMR
FT                 IPEPITQLQTFPGGADAIILAHFIADVEDVLLLLRGTDQTPMGSIYLKAIR
FT                 NKIIGEADEVLKMYDTPLIWDEIKKNLTQYYCNSLSESTLISTLGNLRQGR
FT                 LTFKEFHKQIMELQSKLHGYLALKETDPSATLYKRSFFSQLCLDKFLTGLN
FT                 DPIGSIVRAMKPQNLGEAFMACNREHEIRTKNGEDRWHNQDRQRWNTPNLR
FT                 SNTTYGHQNNHTQRYNPFNNRYRSNRFENNNQYSRNYQNRSISYNPSSFNR
FT                 NTTQNNPIAAEIKSSPSSRALKPYRASEIHNTETHPDNETELKNIDSTSNF
FT                 RVSAYQDPQAP"
FT   CDS           join(1732..3894,3852..5078)
FT                 /product="Gypsy-41_DEl-I_2p"
FT                 /translation="QYVKFSGISLPGPTSPLINSQSPPQKRTGCDLPYILI
FT                 ASPFGKPLKFLIDTGAMASIIDPKFLDTEHTIKCPPITVSGLFNKTEKINT
FT                 KARFAWFEEFKVKGNCEFLAFEFHNYFDGLIGMDLLKQLGAKINLSNFTLT
FT                 TPTATLPILTRIDNTVSVNVIEGLSKKIITIPVDLENGNFLCEPIKISENL
FT                 QISEGLYKSTNYKAMIEVCNFSTDPIQLISQKILSVQPYLENNFIELYNLQ
FT                 LNENHYTSKNDVSNKINTQNLSSEEKEALLKICKKYNSIFYQKEQDLSFTN
FT                 RVKHSIKTTDDSPIYTKSYRYPYIHKEEVRKQVDDLLKQGIIRSSYSPWSS
FT                 PVWIVPKKVDASGKQKWRMVIDYRKLNEKTVSDKYPIPNIAEILDKLGKCL
FT                 YFSTLDLASGFHQIEMEPVDIPKTAFTVEGGHYEYVRMPFGLKNAPATFQR
FT                 VMDNLLRDLIGNTCLVYLDDIIVFSTSLEEHIVKLENVFKKIKQSNLKIQL
FT                 DKSYFLQKEIAFLGHIVTPEGIKPNPDKIKAIKMFPIPKTQKEVKSFIGLV
FT                 SYYRKFIKDLARITKPMTASLKKGAKVLHTNEFIKSFEDCKQLLCNDPILI
FT                 HPDFQKKFILTTDASNFALGAVLSQGNIGSDKPICFASRTLSQSETNYSTI
FT                 EKELLAIVWAAKYFRPYLYGRQFTIVTDHKPLTWLMSLKEPNSKLVRWRLK
FT                 LEEFSYEIHYKKGKCNTNATHNPLQKGQVQYQRDALSRINLETYALATSSV
FT                 AATDGSSLHSAEEDLSGDLPISEKLLKEFNLQMILEESKTSQLVNIVPHRN
FT                 KLRRVIKEPFFTEDKIIEILKKFLRPNRLAAIYTSDVIFSXIQSAYKKLFS
FT                 NTHLHRITRCTQIAEDISDNDKQDEIISKYHKDSNHRGIREXYEHLXRSYY
FT                 FPQLRDKISKFINSCTTCQVFKYDRNPPAIIYSKPENPDKPLEIIHIDIYX
FT                 VNHKQILTIIDKFSRFASAHTLEARSSIHVIRAXKTFFSTHGIPKKIVCDQ
FT                 GTEFSSMIFKDFCDQYNINLHTTSFQQSSSNSPVXRLHSTLTEIYRIILGE
FT                 RKANKMSVDHDELLCETLITYNNSIHSATNLTXFELFSGRTPEFDHSEKYN
FT                 NVHEYLKKLNEYKQNLFPKVKD"
FT   CDS           6133..7398
FT                 /product="Gypsy-41_DEl-I_3p"
FT                 /translation="MDAQDAVEIENRIKQIKENSKNTQIELSRQNELNTFI
FT                 VEKLKNITDHINKEQEIISNYFNNGIYGNRIIKTENNLIKIQYLNRLGYNI
FT                 DVLFQHINDISESILLARINIISKFILSKEELETISHTFENEXVTIQSIEH
FT                 IYELISLQAYYKHDEIVFSIKVPIVSKTSYKFSHFLPLPISGTKYINTLEY
FT                 VAYDTEIMYFYKQKCPRVEDIFYCEETAAKENREQSNCMGKIINNQQPTCN
FT                 LIDRGRLKYISQLENNLLLVSNIPRTLISSDCREPFYLENTAILHQDNCSV
FT                 TINDITYESKPQLVTEKFNINLPVHPHVLPNETLKFPTLERLDEDLSISNA
FT                 STTHFVELTAFHQTATYSILAALGIIILILSAVSFRRNQSTTFVPTIQSQL
FT                 AAPITVPTPAPAYTPLASLWPSLYSKGG"
XX
SQ   Sequence 7400 BP; 2903 A; 1522 C; 1107 G; 1851 T; 17 other;
     ggcgcagtcg gtagtggtcg caagaagttt acaaaaaata agtaaacagc gaccccggaa        60
     aacgcaagtg gcaaacaact aaaacaaaaa aaatatatac taaaagaaat aaaattagtg       120
     cagttttcaa cgaaattttt tttagtgttt gtgcgttttc ttaaaaaatt ttacgacaac       180
     gataaatatc accaaaaaat tgtatcatta ttacacaaaa aaatataatt cagactcaaa       240
     aaaaaaaagg gaaaaacaag aagggagaaa agatwtatcc gaaaaaacaa acamaaattc       300
     gtgcaacawc aaatttttww wwaagaaaag aacacggaaa caatgcatca acacaaagga       360
     aatcaaacat caattaaaat atataacatc gatctcatcc aggaaatcag aaaggaaagg       420
     aaaaacgatg tacctcctct tactctgggc aacgtgagta atgcatacat acatacatac       480
     atttatacaa attttaacac tgatcggcta ggaaaataat acaaaaaaag aaagaagaga       540
     gaaacagttt aagtacacta atagaaaaat attttattat caaagagatt ttaataaaat       600
     caaaataaat tttttttttt ctcataaaat cctatgtcca aacttagatt cctaccttat       660
     agaaaaggaa cagacaggca agctaatata aaaaaaacat aacgaggaag aattaacaat       720
     ggcaaaccca aacttaaata tacccccagg accccaacaa tcagctggga gttcgattaa       780
     cttaaacacc cctttaccac ccttgataaa cttgttcaac caaatgagaa tcccggaacc       840
     aattacacaa ttgcagacat tcccgggggg cgcagacgca attatacttg cccattttat       900
     agccgatgtg gaagatgtac tccttctttt gcgagggact gatcagactc ctatgggcag       960
     catctacctc aaagccatta gaaataaaat tataggagaa gcggacgagg tgcttaaaat      1020
     gtacgacacc ccattaattt gggatgaaat aaaaaaaaac ttaacacagt actactgcaa      1080
     ctcgctatca gaatcaactc ttatatccac attaggkaat ttaaggcaag gtaggctaac      1140
     gtttaaggaa tttcataagc aaattatgga attacaatca aaactgcatg gatacctcgc      1200
     cttaaaagaa actgacccta gtgcaacact atacaagagg agttttttta gtcaactatg      1260
     tctggacaaa ttcttaacag gacttaacga tcccatagga tcaattgtaa gggctatgaa      1320
     gccccagaac ttgggcgaag ccttcatggc ttgcaataga gaacatgaga ttaggacaaa      1380
     aaacggggaa gataggtggc acaaccaaga tagacaaagg tggaacacac ctaacttacg      1440
     atctaacact acttatggtc accagaataa tcatacacaa agatacaacc cttttaataa      1500
     tcgataccgt agtaaccgct ttgaaaataa taaccaatac agtagaaatt atcaaaatcg      1560
     ttcaatcagc tataacccat catcctttaa tcgtaataca acccaaaata accctatagc      1620
     agcagaaata aaatcgagcc cgagctccag ggccttaaag ccctacagag cctcagaaat      1680
     tcataacaca gaaacccatc ccgataatga aacagaacta aaaaacattg acagtacgtc      1740
     aaattttcgg gtatcagcct accaggaccc acaagccccc taatcaacag ccaaagtcct      1800
     ccccaaaaaa gaacaggttg tgacctcccg tatatcctta ttgcttcacc ttttggcaaa      1860
     ccccttaaat tccttataga cacaggggca atggcctcaa tcatagaccc aaaatttttg      1920
     gatacagaac acactattaa atgtcctcct ataacagttt cgggattatt taacaaaacc      1980
     gaaaaaataa acactaaagc cagattcgcc tggttcgaag aatttaaagt taaaggtaat      2040
     tgcgaatttc tcgcttttga atttcataac tacttcgatg gacttatagg aatggaccta      2100
     cttaaacaac taggtgccaa aatcaacctt tcaaatttta ctctgactac tccaacggca      2160
     actctcccaa ttctcactag aatagataac accgtctcag ttaacgtaat cgaagggtta      2220
     tcaaagaaaa taataacaat accggtagac ctggaaaatg gaaactttct ttgtgagcca      2280
     ataaaaattt cagaaaacct acaaatttcc gaaggcctct ataaatcaac caattataaa      2340
     gcaatgattg aagtttgcaa tttttcaacg gatcccattc aactaatttc acaaaaaatt      2400
     ctttcggttc aaccctattt agaaaataac tttatcgaac tttataatct ccaattaaat      2460
     gaaaaccatt acacctcaaa aaatgacgtt tctaataaaa tcaacactca aaatctgtcc      2520
     tctgaggaga aagaagccct tttaaagatt tgtaaaaaat ataactccat tttttatcag      2580
     aaggaacaag atttgtcatt tactaataga gtaaaacata gtattaaaac cacagatgac      2640
     tctccaatat atacgaaatc ttatagatac ccgtatattc acaaggaaga agtccgaaaa      2700
     caagtagatg acctcttaaa acagggtatt atccgctcaa gctactcccc ttggagcagc      2760
     ccagtttgga tagttccaaa aaaggtcgac gccagtggaa aacaaaagtg gcgaatggtg      2820
     atcgattaca gaaaactgaa cgaaaaaaca gtttctgata aatatccaat cccaaatatt      2880
     gccgagatcc ttgacaagtt gggcaaatgc ctatacttct caactctcga cctcgccagt      2940
     ggattccatc aaattgaaat ggaacccgta gatatcccca aaacagcctt caccgtggag      3000
     ggaggtcatt acgaatatgt aaggatgccg ttcggactaa agaatgcccc ggcaaccttt      3060
     caaagggtaa tggacaacct gcttagggac cttattggaa atacctgtct agtttaccta      3120
     gacgacataa ttgtgttctc aacatcttta gaagaacaca ttgttaaact agaaaatgtc      3180
     tttaaaaaaa taaaacagtc taaccttaaa atacaattgg ataaatctta ttttctacaa      3240
     aaagaaatag cattccttgg tcacatagtg acaccagaag gaataaaacc aaaccctgat      3300
     aaaattaagg caattaaaat gttcccaatt cccaaaacac agaaggaagt aaaatcattc      3360
     ataggtctcg ttagctacta taggaaattt ataaaagatc tcgcgaggat aacgaaacca      3420
     atgacagctt ctttaaaaaa aggtgccaaa gttttacaca caaatgaatt tattaaatct      3480
     ttcgaagact gcaaacaatt actttgcaat gaccccattt taatccaccc agattttcag      3540
     aaaaaattca tactgaccac tgacgcaagt aattttgctc ttggtgcggt attatctcaa      3600
     ggtaatatcg gaagcgataa gccaatctgt tttgcgagcc gaacactatc tcaaagtgaa      3660
     accaactatt caacaattga aaaagaactc ttagcaatag tatgggcagc caaatatttt      3720
     cggccctacc tctacggtag gcaattcaca attgtaaccg atcataagcc cttaacttgg      3780
     ctgatgagtt taaaagaacc taattctaaa ctcgtaaggt ggagactcaa gctcgaggaa      3840
     ttctcttatg aaatccatta caaaaagggc aagtgcaata ccaacgcgac gcactaagtc      3900
     gtatcaacct agaaacatac gctctagcaa cttcttctgt cgcagccaca gatggtagct      3960
     ctttacactc cgcagaagaa gacttaagtg gtgacctacc gatatcagag aaattattaa      4020
     aagaatttaa cttacaaatg attttagaag aaagcaaaac atctcagtta gtaaatattg      4080
     taccacacag aaacaaatta cgaagagtta ttaaagaacc atttttcaca gaagacaaaa      4140
     tcatcgaaat tctaaaaaaa ttcttacgtc ccaatagact agcagcaatt tacacatcag      4200
     atgttatttt cagtmaaata caatctgcct acaaaaaatt attttccaat acccatctac      4260
     atagaattac gcgktgcaca cagatagcag aagatatttc ggacaacgac aaacaagacg      4320
     aaataataag caagtaccac aaagactcta atcatagggg aatcagggaa wcatacgaac      4380
     accttaamag atcttactat tttcctcaac tacgggataa aatatctaaa tttattaata      4440
     gctgcaccac ctgccaagtg tttaaatacg atagaaaccc accggccata atctatagca      4500
     agcctgaaaa ccccgacaaa cccctcgaaa taatacatat tgacatatat tgkgttaacc      4560
     acaaacaaat tctaactata atcgacaaat tttcccgttt cgctagtgct catacactgg      4620
     aagcacgaag cagcatacac gtaatcagag catwaaagac cttctttagc actcacggta      4680
     tccccaagaa aatagtttgt gatcaaggaa cagaattttc atcaatgatt ttcaaagact      4740
     tctgtgacca atataacata aaccttcata ccacatcctt ccaacagtct agtagtaact      4800
     caccggtaga wagacttcac tcaacactta cagaaatata caggatcatt ttaggtgaga      4860
     gaaaggcaaa taaaatgtca gtagatcacg acgaacttct gtgtgaaacc ctcattactt      4920
     acaataactc aattcactct gccaccaatc taaccscttt tgaacttttc tcgggcagaa      4980
     caccagaatt tgaccactcc gaaaaatata ataatgtcca tgaatatttg aaaaaactta      5040
     acgaatataa acaaaactta ttcccaaaag taaaagatta aatcgaaaaa attcttaacc      5100
     acaggatagg caacctcaat aaagaaaggc aggaaccaga aaccctttcc cccggagata      5160
     ttgtatttag aaaagaaaac agacgaaata aactaacacc gagattttca actcatgagg      5220
     taaaagagga caaaggactc acgtttctaa gcaaaaaatc acaaaaaatc cataaatcta      5280
     aaataaaacg gaagattaaa acaacataat aaaacatttt tcttaatttt agaccctaag      5340
     tacacaaaag tatatatatg tgctcctttg agagactacc tttgtgaaca aaaaaaaaaa      5400
     ctaaatatag aaactaaatt tttatgtgct cctttgagag actattcctt tgtgaataaa      5460
     aaatatatat atgaagaaac taaattttta tgtgctcctt tgtgagaccg ttcctttgag      5520
     aacgaaaata tttacgggac atgtcataaa aaaaaaacac ataacaaaat aacacagagc      5580
     tccttgagag aatatcaagt gactctctat aaacaatttt tcttaataaa aaaaataaaa      5640
     agccattaaa acatgacccc aaagaagtaa caataataaa aaaaaaacaa aacataacaa      5700
     aataacacag agctccttga gagaatatca agtgactctc tataacaaaa cttaaataac      5760
     ttaatacaaa aaatattttt acttctacct acttttagat ttatatcggt atcagcacgg      5820
     catctgaacg tacaggtctt aaacgataac ctcagcatag tggaaataaa attaggggaa      5880
     actaggatta ttaatggaca caaaataata ctacacatta taaatttaag atcactctta      5940
     gaaaattcag acgctttaga tcaaacaatt aacgcaatag caaatgatcc cgatacagaa      6000
     caaactatag atataattag actcaaaaat cagcagttaa aaaagaaaat taataacctt      6060
     ttacctaaca accgtaaaaa acgcggatta attaacggat taggttcagc aataaagttc      6120
     atctctggca atatggacgc tcaagatgct gtagaaattg aaaataggat taaacaaatc      6180
     aaagaaaatt ctaaaaacac acaaatcgaa ttatctcgcc aaaacgaatt aaacaccttc      6240
     attgtagaaa aattaaaaaa tattactgat catataaaca aagaacaaga gataatatcg      6300
     aattatttta acaacggaat ctatggtaac agaattataa aaaccgaaaa caacttaatt      6360
     aaaattcaat atctaaatag acttggctat aatatcgatg tacttttcca acacattaat      6420
     gacatttcag aaagcatcct tttggcaaga attaacataa tttccaaatt tattttatca      6480
     aaagaggaac tggaaactat atcacataca tttgagaacg aawctgttac catacagtca      6540
     atagaacaca tttatgagtt aattagccta caagcgtact acaagcacga cgaaattgta      6600
     tttagtatta aagttccaat tgtttctaaa actagttata agttttccca tttcctacca      6660
     ttgccgatca gtggaactaa atacataaac acactagagt atgttgctta cgacacggaa      6720
     ataatgtatt tttacaagca aaaatgccca agagtagagg acatctttta ctgcgaagag      6780
     acagcggcga aggaaaaccg agagcaatcc aactgcatgg gaaagatcat caataatcag      6840
     caaccaacgt gcaatctaat cgacagaggg cgtctaaaat acatcagtca actcgaaaat      6900
     aatcttcttc tggtatcaaa cataccaaga accctcatct cttccgattg cagagaacct      6960
     ttctatttgg aaaacacagc tatcctacac caagacaact gcagtgtcac tataaacgac      7020
     atcacctacg aaagcaaacc tcagctggtg acagagaaat tcaacatcaa cctgccggtc      7080
     cacccacatg ttttgccgaa cgaaacacta aagttcccta ccttggagag gcttgacgag      7140
     gatctgtcca tctccaatgc gtcaacaact catttcgtgg agttaaccgc ttttcaccaa      7200
     acagcaacct acagcatctt ggccgcctta ggaataatta tacttattct atccgcagtt      7260
     tccttccgac gaaaccaaag taccacattt gttcccacga tccaatcgca gctagccgct      7320
     ccgattaccg tcccgactcc cgctccggcc tacactccgt tggcatcgct ctggccgtcg      7380
     ctctattcca aggggggagg                                                  7400
//
ID   Gypsy-41_DEl-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_DEl-I;
KW   Gypsy-41_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-398
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3103-3103 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. AG-CT termini. 4-bp TSDs.
XX
SQ   Sequence 398 BP; 113 A; 108 C; 88 G; 89 T; 0 other;
     agttatgaat ccacccctgg ccggacccat ggtcatggat ccgcccctgg gtagctccat        60
     ttcgtactga gcttccggga gcatcgacca gcaacgccaa caccaaaaac aagctgacac       120
     cgctacagga gcattgacca gcagcgtcaa caccaactac tagctgacac cgctacacat       180
     gcatcgggcg gatgctcgtg gcggatgcaa gccagccgct gcgtcggcaa gaatggcaac       240
     tggccgattg attcgacaac ttgtaaattt ccaaataatt ttagttgctc tgctgcgaca       300
     gagcttaggt ttcttttaag acaatttgaa aataataaat cagtctgaaa gtcacaactg       360
     acgagtgtac gcgttttaaa tcgaacccta acttaact                               398
//
ID   Gypsy-41_DWil-LTR repbase;    DNA;    INV; 442 BP.
XX
AC   scaffold_181154;
XX
DT   06-MAR-2011 (Rel. 16.03, Created)
DT   06-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_DWil_;
KW   Gypsy-41_DWil-I; Gypsy-41_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-442
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181154; Positions 1994457 1994898.
XX
SQ   Sequence 442 BP; 151 A; 97 C; 71 G; 123 T; 0 other;
     tgtagcatgt tcacatatcg aatgatcact gtacctagtt acatacatac ataattcata        60
     aataatatca aaaacatatt gtagcacttt gtcacaatat ttatgtatac acattcaagt       120
     accatgcgtt tcccgtaaca ttgcattgta ctggacagtg ctgagtcgtc atatctaaca       180
     cgcgcaacga ctcaggcacc aagtgaacat gatacgtcct cactctcccg cagcgaacca       240
     tacataatta tgtaaacata tatacataag cgtaccgctc ctctgctggc ttcactggca       300
     ccgcagtcac gcggacttta gctatactga acaattgtga agatttaaga attcattcaa       360
     taaacagaac actaagtgaa aacaccagca actaagcgaa aatataattg ttgtattatt       420
     gtgaattgtg ggacatagta ca                                                442
//
ID   Gypsy-41_HeAr-I repbase;    DNA;    INV; 5628 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5628
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5587-5587 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..2060
FT                 /product="Gypsy-41_HeAr-I_1p"
FT                 /note="gag."
FT                 /translation="METYPIKFFLLNKNELVYEVLIRGEEPASTVLELRKQ
FT                 INKLTPIIPTSDICESGIEPDVDISGASTSLSELLSRVKSLEDKFDNNLFE
FT                 RTRTLCNHLYHRIKRLDGSDSKYADKIKSLTKHITTLSAKLDTINKSANPT
FT                 SCEPVAEVVHPIASSDVPPNVSIHCDRSHISDLQKLKYNGKSCVHAFIQRV
FT                 REYSTARNISSSKLLAYATEIFTGDALHWYRSIRTSVSTWEELVAVLVQDF
FT                 SQFDYDYRLLSEIRQRTQGDTETITIYFAKMKELFSRLSKNISEQEKLEIL
FT                 LHNIRPCYASVLASNSSTINSIDSLKTICRNFERIQSLTSQFKEPPRITGE
FT                 TLAPDLAFSKFNEPNLNKPKFYNRYNNKYNNNPDNNSSYTKTNFKNQHFNN
FT                 NSYNFNEKPNTNVAAITQPSSSNIKTVFCPRCRNSDHPLSQCKANRYPICF
FT                 KCGTKDVKYPNCPNCHSKSNSKN"
FT   CDS           2051..5290
FT                 /product="Gypsy-41_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FKKLTTEDCCNINDKTKTKNSKNFDENDWQNWLLTIK
FT                 TFFSSYFVTTIFDKKPIDDIRPYATVLVGDITLCGLLDSGSAATILGNNCH
FT                 DYLKSIGLAIHKDLKTFTAAGGGNLPTIGYVNLPVTFENQFHILKAYVIPT
FT                 IKTNLILGVDFWTKFNLFPKFSKSISLHSLSNCPTNVNTVSEANGMLRSYN
FT                 ELTEDQRVTADNIIDQFKNISTEKCGLGRTNLVMHRIDTGDSLPIRQRYYR
FT                 VSPEKQRILSEELDEMLALGVVEECESPWSSPVLLIPKKDGKLRFCLDSRK
FT                 LNSVTKKDAYKLPYISEILDNLKNAKYLSSIDLSRAFWQIPISETDRNKTA
FT                 FYIPHRGTYRFVTMPFGLTNSPATQQRLVDTLFYGPEFENSVFVYIDDIVV
FT                 ASSDFESHISLLLKVHKKLKMANLTINFEKSVFFRNELKYLGYVVNSKGLH
FT                 VDPSKIETIVNYPTPTNKKEVKRFLGIASWYRKFVPNFSSIAGPLNKLTST
FT                 NKKTNPFAWTTQAEESFNKLRELLVSAPILSCPNFDLPFQVHTDASDYGVG
FT                 GMLTQTIEGVEHPIAYYSRTLTGPERNYSITEREALAVLVALEHWRCYLDN
FT                 GMKFVVYTDHSALKWFLNLSNPTGRLARWGVRLSAFNFEIKHRRGVDNVIP
FT                 DALSRSCKISAIHSNNVLPNTNDQWYLNIYHGCQNSPTSFPNYLIKNNRLF
FT                 RYSKTNNPLHKEFEWKEVIPAESRQAIVLENHSDPTAGHFGIFKTFKRLSL
FT                 SYFWPGMHADVVKAVTSCDTCIAHKHQNHAILGEMGRPKHCTRPFQVISVD
FT                 LVGPLPPTRKLNTFILVVTCCFSKYCLLFPIKRATAEIVTRILEEHVFLIH
FT                 GIPSTVILDNGKQFVSTTLKQMLDKYKVPKLHFTPKYSPHVNTVERYNKTI
FT                 MTAISTFISNDQRIWDLLVPKIQFAVNCSVNEVTGYTPSFLVYGRELVTCG
FT                 THYIDADTDDDLTFQPRDSYAENIGVLSSIFNKVQSLLLQAHSRNCQHYNL
FT                 RRKPAEFNVGDVVWRKTFYLSDKDKYFNKKLAPKFIKCKIIGKKSPLVYEL
FT                 ADMSGKLLGSWHIKDIKITNYKT"
XX
SQ   Sequence 5628 BP; 1790 A; 1036 C; 904 G; 1898 T; 0 other;
     gtggcgccct taccgtggtt tctgttgcct aatcacgtct agattctagt ctattggtca        60
     gctgctaaat aatcacctac ctacaagtta ttgtgaacga gacggtgact cggcgaactg       120
     gtacgtactt tgtcataata ttatactgtg ctcttttctg ttttttattc ttttatgttc       180
     tggatgtgcc ttttctgttt ttctttctgt tttatgttat ttgttaactg ttgcgtattg       240
     tacacgttac ttttggaaag catatcggtt attattttaa ataactattt cgagttcaac       300
     aacaataaaa ctacatttaa tgttaactgc aaattgaaac tattattgta aattagtgac       360
     taaagctact ttataaatga ttagatctta ttaattattg ttatacgtaa cagttcgcat       420
     attttttctt cctttctttt ctatcatttt catttttttg tttttcatct acccacttat       480
     tttttttttc ttctcattta atttttattt gggtattcat tttgcatcac ctcatcgtaa       540
     taaaaggtag tagttacttc tagttgtaaa gaacaccatt ttcattatca cttcattatc       600
     taatagtagt tatctgtttc tgttttcatt ttcttaattt ctgcactgta agcgtcatgg       660
     aaacttaccc tattaaattc tttttgctta acaaaaatga gttagtgtac gaggtgctaa       720
     ttagaggcga ggaacctgcg tcaacggtac ttgaactccg taaacaaatt aataaactta       780
     cacctattat tcctacttcg gatatttgcg aatcgggcat agaaccggac gttgatattt       840
     cgggtgctag cacatcttta agcgagctat tatcacgcgt aaagtctctc gaggataagt       900
     ttgataataa tctttttgaa cgtactagga ctttatgcaa tcacctatat caccgtataa       960
     aacgtttaga tggttctgat tctaaatatg cagacaaaat taaatcacta acaaaacata      1020
     ttactacact ttcggcaaaa ttagacacta taaataaatc tgctaatcct actagctgtg      1080
     agcctgtagc agaagttgtt catccaatcg catctagtga tgttccacct aacgtatcga      1140
     tacattgtga ccgttcgcat attagtgatt tacaaaaact taaatataat ggcaagtctt      1200
     gtgttcacgc ctttatacag agagtgaggg aatacagcac ggctaggaac atatcttctt      1260
     ctaaattgtt agcttatgct actgaaatat ttacgggtga tgcgttacat tggtaccgta      1320
     gcatcagaac ctctgtgtct acgtgggagg aactggtggc tgtactggtt caggatttta      1380
     gtcagtttga ctatgactac cgacttctgt ctgagattcg gcagcgcact caaggtgata      1440
     ctgagacaat cacaatctac tttgctaaaa tgaaggaatt attctccagg cttagtaaaa      1500
     acatatcgga acaagaaaaa ctagagatcc ttctacataa tattcgacct tgttatgcta      1560
     gtgtgttggc ttctaactca tcaactataa attctattga cagtttaaaa acaatctgca      1620
     ggaactttga aagaatacag tctttaacat ctcagtttaa agaacctcct agaattacag      1680
     gtgaaacctt agctccagat cttgccttct caaaatttaa tgaacctaat ttaaataaac      1740
     ctaaattcta caatagatat aataataaat ataataacaa tcctgataat aattcatctt      1800
     acactaaaac taattttaaa aatcaacatt ttaataataa ttcttataat tttaatgaaa      1860
     aaccaaacac taatgtagct gctataacac agcctagtag ttcaaacata aaaactgttt      1920
     tctgtccacg ttgtcgtaac tctgatcatc ccttaagtca atgtaaagct aacaggtacc      1980
     ctatttgttt taaatgtgga actaaagatg ttaaatatcc taattgccct aactgtcact      2040
     ctaaatctaa ttcaaaaaac taactactga agattgttgt aatataaatg acaaaactaa      2100
     aactaaaaac tctaaaaatt ttgatgaaaa cgattggcaa aattggctat taactattaa      2160
     aacattcttt tcaagctatt ttgttacaac aatcttcgat aaaaaaccta tagatgatat      2220
     acgtccctac gcaactgtcc tggtaggtga tattacattg tgtggattac tagactctgg      2280
     ttcagcagca actattctag gcaacaattg tcatgactat ctaaaatcta ttggactagc      2340
     tattcataaa gacctaaaaa cctttactgc tgcaggaggc ggaaatttac ctactattgg      2400
     ttatgttaat ttacccgtaa catttgaaaa tcaatttcat attttaaaag cttatgttat      2460
     acctactata aaaactaatc ttattctcgg tgtcgatttt tggacaaaat ttaatctctt      2520
     tccaaaattt tctaaatcta tttcgctaca tagtttgtct aattgcccta ctaatgtaaa      2580
     cacagtctct gaagctaatg gtatgttacg ttcctataat gaacttactg aagatcaacg      2640
     tgttacagct gataacatta tcgatcagtt taaaaatatt tctactgaaa agtgtggttt      2700
     gggtagaact aatctagtta tgcatcgcat tgacactgga gattctttac ctattaggca      2760
     aagatattac cgcgtttctc cagagaagca acgtatttta tctgaagaac tagatgaaat      2820
     gctagcgcta ggtgtggttg aagaatgcga gagcccttgg tcttctcctg tcttacttat      2880
     acctaaaaaa gatggcaagc ttaggttctg tctagatagc agaaaactaa actctgttac      2940
     taaaaaggat gcctacaagt taccctacat atctgagatt ctagacaacc tgaaaaatgc      3000
     taaataccta agtagcatag acttatctag agcattttgg cagataccta tttctgaaac      3060
     tgatcgtaac aagactgcgt tctacattcc gcatcgtggt acctacagat ttgtcactat      3120
     gccattcggg ttgacaaatt caccggctac acaacaaaga ctcgttgata ctttgttcta      3180
     tggacctgaa tttgaaaact ctgtatttgt ttacatagat gatatagtag tagctagttc      3240
     tgattttgaa tctcatattt ctcttctcct gaaagttcat aaaaaattaa aaatggcgaa      3300
     tttaactatc aactttgaaa aatctgtttt cttccgtaat gagcttaaat accttggcta      3360
     tgtagtaaac tctaaaggtc ttcatgttga tccttctaaa attgagacta ttgttaatta      3420
     ccctacacct acaaataaaa aagaagttaa acgatttctg ggtatagctt cgtggtaccg      3480
     gaagtttgtc cctaatttta gctcaattgc tggtccgtta aataaattaa cttctactaa      3540
     taaaaaaact aatccttttg cttggactac ccaagccgaa gagtccttta ataaattaag      3600
     agaattacta gtctctgccc ctattctatc ttgccctaat tttgaccttc cctttcaagt      3660
     acatacggat gctagcgact atggtgttgg aggtatgcta acccaaacca tagaaggagt      3720
     ggaacaccct attgcctact atagtagaac tttaactgga cctgaaagga actatagcat      3780
     tacggagcgt gaagctttgg ctgtgttagt agctttagaa cactggagat gctatctgga      3840
     taatggtatg aagtttgtcg tctatactga ccattcagct ctcaagtggt ttctaaatct      3900
     aagcaaccca actggacggt tagctcgctg gggtgtccgt ctatctgctt ttaattttga      3960
     aattaaacac aggcgtggcg ttgataatgt tatccctgat gcattgtcac gttcatgtaa      4020
     aatttcagcg atacattcta acaatgttct acctaacact aatgatcagt ggtacttaaa      4080
     tatatatcat ggttgtcaaa attctcctac atcatttcct aattacctaa ttaaaaacaa      4140
     tcgtttattc cgttattcta aaactaataa ccctttacat aaagagttcg agtggaaaga      4200
     agtaattcct gctgagtcta gacaagctat tgtactcgaa aaccactcgg acccaacagc      4260
     tggtcatttc ggtattttta aaacatttaa acgtttaagt ctcagttatt tctggcctgg      4320
     tatgcatgct gacgttgtaa aagctgttac ttcttgtgat acttgcatcg cgcacaaaca      4380
     ccaaaatcac gcgattctag gtgaaatggg tagacctaaa cattgtacta gacctttcca      4440
     agttattagc gtggacctag taggacccct acctcctact aggaaactaa atacctttat      4500
     tctagtcgtc acttgttgtt ttagtaagta ttgcttacta tttccaatca agcgcgctac      4560
     cgctgaaatt gttaccagaa tactggagga acatgtattc ctaatacatg gcattccatc      4620
     cactgtaata ttggataatg gtaaacaatt tgtaagtacc acgctaaaac aaatgctaga      4680
     taaatataaa gtacctaagt tgcattttac gcctaaatat tcaccacatg taaacactgt      4740
     tgaacgttat aataaaacta ttatgactgc catttccacg ttcatctcta acgatcaacg      4800
     tatttgggat ctactagtac ctaaaataca attcgctgtg aattgttccg taaatgaggt      4860
     tactggctac accccctcat ttcttgtata cggacgtgaa ctagtgactt gcggtacaca      4920
     ttatatcgat gctgatactg acgatgattt aacttttcaa cctcgcgatt cctacgcgga      4980
     gaacataggc gtcctatctt ctatctttaa taaagttcag tcactacttc tacaagctca      5040
     cagtcgtaat tgtcaacatt ataatttacg ccgaaaaccg gctgaattta atgttggtga      5100
     tgtagtgtgg agaaagacgt tttaccttag tgacaaagat aaatatttta ataaaaagtt      5160
     agcaccgaaa tttataaaat gtaaaataat tggtaaaaag tctcctcttg tctacgagtt      5220
     agctgatatg tctggaaaat tactaggttc ctggcatatc aaagatatca aaataacaaa      5280
     ttataaaaca taataaatat atacaaatta aaacataata attataataa gctaatatat      5340
     ctaacctagt cttaatagta acatcttatc tacttaactt atgtattaaa tattgtatta      5400
     attttttaca tacaaactta ctaacgagaa caattgatac tatataattg tgactctgtt      5460
     tgttagggtc tccagtcata aactaaaaga cttgcagacg gtgtgatttg tttatgtggg      5520
     cgtgaagtat gaatgttagc ctgaacgtat tagtaagttt gcagttagta gtgatagcgg      5580
     atttttctat tctaagtacg aaaaatcctt cactttgcgg cggggtac                   5628
//
ID   Gypsy-41_HeAr-LTR repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 26.10, Created)
DT   21-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-930
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5617-5617 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 930 BP; 249 A; 219 C; 188 G; 274 T; 0 other;
     tgtaacgttg tactttccta gctctaagaa taggttagaa attaaataaa atagaaatat        60
     ttacaataga attattctaa aattaataaa acacctaaag taaactaaaa taaataaaat       120
     aaaaaattat aatatattaa aattaacata attcgtatac ggaacccaat attaattatt       180
     tacacaaagg tcctcgtaac tattgcgcct acgcatctct aaacgggtga actggtttcg       240
     ccgcgcgcga cggtggtgcc tcgagtgcat tcgggccgga gacgcggcag acgaccaaat       300
     tgcatcagac gtgacggctg tgtcacacgt ttttttactt gaccttcaat tattgcgtac       360
     ctgcctaatt tctacttatt tgtgctagac aaattctaat cggaaatccc gctggggtaa       420
     gtttccatgc attgcttaac ttctattgta aggtgttctt cttgctaaat ttctgtctaa       480
     agcagctgtt cttagttcac tttgtttgct gggacactgt gacctttgga cccggcaacg       540
     tggcccaagc tctgctaatg ctagccttgt ctctgcgctt ccaggattta atttctacgt       600
     tggatattct acgttcttcg ttaaaccctc gctacgcaat ctttctacct ggcggcgagt       660
     gaaagaccag acctgatcct gtctggaact acctgggtcc tgctggagac ctggcagtgc       720
     aacctggcaa ggagctgggc cgtcgtcgga gctacaccac ggttcaggcc agtgttccca       780
     gtgtaccttc tacctcgaga tctattcgtg attagggcaa cagaagttgg cttaaataaa       840
     gtctcaattt ctaccaaatt gtgtacttta tttggacccc tacctaccta cctgtcggcc       900
     agccggacta ccagcctacc agcggccgca                                        930
//
ID   Gypsy-41_LMi-I repbase;    DNA;    INV; 4096 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4096
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..929
FT                 /product="Gypsy-41_LMi-I_1p"
FT                 /translation="MSTGEANGNQGNRSECSSKMEIDKVSVKLPPFWTEKP
FT                 DIWFCQAEAQFTIAGIVTEATKFNYLLAQLEPKFVENIWDLVTSNENNKYS
FT                 LAKERLLNIFRESEERQIKKLLSGLELGDMKPTQLLRKMRSYAGTNVSEKI
FT                 LKTLWLDKLPXSIRSILVISDETVDKIAQMADRMIELNAVEEVQIASTHSI
FT                 PSTSSSLSVQDLLVRIDELENEIKMLRNTRSRRQRSRSRSRSRARYDKNGK
FT                 YCYYHFRFGTRCKPEKCVQPCQWQNKEN"
FT   CDS           1721..4066
FT                 /product="Gypsy-41_LMi-I_2p"
FT                 /translation="MLQNKNIFSKVDLLKAYYQIPLAEEDKPKSAVITPFG
FT                 LYEFNYMPFGLRNAPSTFQRFIHEVVRELEFCFPYLDDILIASESPEQHVE
FT                 HLNLLFEQLNKYGLVINVSKSVFGVQQLTFLGNLITPAGTKPDPERVAAIM
FT                 NYKRPKTVRELRKFLGIINFYRRHLEHAAENQALLNDFLKGTTKKDRRHIN
FT                 WTEEAIAQFEKCKEDLANAALLTFPGLNNQLALFVDASDFAAGAALQQWQD
FT                 GQWRPIGFFSKKFTTAQKKYSTYDRELLSIYMAVKYFKYLLEGRDFIIYTD
FT                 HAPLTYAFKQKNEKATPIQLRYLQYISQFTTDLRHISGKENVVADGLSRLE
FT                 ELVPVNYDEIAQAQEDDEELRQLQTSPHTSLKLKHHLTHGGKQLWCDVSTQ
FT                 IIRPYIPKPFRYPIFQHYHNLAHPGIKTTVKMISSRFVWINLKKDVQNWAK
FT                 TCIACQKNKISRHIQTPVGHFPSNDERFKIVHLDLIGPMPPSEEYIYCLTC
FT                 IDRVTNWTEVVPLRDIQAEAVAQAFFNCWITRFGTPYQIVTDQGRQFNSEL
FT                 FRALSKLCGCNQTQTTAYHPQSNGKIERFHRTLKAAIRAHATAKWTQVIPV
FT                 ILLGLRCSIRENSNATIAEMVYGSPIRIPGDFFQEYATKLDADLPQFVSQL
FT                 KQYMNRLKPVQYSHKAKERPFIHRDLNESTHVFVRVDRVKKALEPPYEGPY
FT                 EVIERTPKFFGVKIKDQVKNISIDRLKPAYLMNHNEKQPEDTSTERSAQVK
FT                 QPDTTDSGKPRRTRSGREVRFPARLVEELQC"
XX
SQ   Sequence 4096 BP; 1429 A; 816 C; 778 G; 1071 T; 2 other;
     cnaaattggt gacgaccgac gtgatcgaca agacgacagt tgcgacgaaa tttttcggcg        60
     aaattttcga cgagatttcc gtaacttgag ttcgacgtat tctgtgtcca acaatacgca       120
     aaatgtcgac aggagaagca aacggtaatc aagggaatcg ttctgaatgt agcagtaaaa       180
     tggaaattga taaggtaagc gttaagctac cgccgttttg gacggaaaag cccgacatct       240
     ggttttgtca agccgaagcg caatttacga tcgctggtat tgttacggag gcgactaaat       300
     ttaactattt gctcgctcag ctggagccaa aatttgttga aaatatatgg gatctagtta       360
     caagtaacga gaacaacaaa tattctctcg caaaagaacg tctactgaac atattcagag       420
     aaagtgaaga gcgccaaatt aaaaaacttt tgagtggctt agaacttggc gacatgaaac       480
     ctacccaatt attaagaaaa atgaggagct atgcaggtac aaatgtatca gaaaagatcc       540
     taaaaacact ttggcttgac aaacttccag stagtattcg aagcatttta gttatatctg       600
     acgaaacagt ggataagata gctcaaatgg cagatcgtat gatcgaatta aacgctgttg       660
     aggaggttca aattgcttcc acccattcca ttccgtcaac atcgtcttct ttgtcagtac       720
     aagatcttct cgtgagaatt gatgaattgg aaaatgagat taaaatgctt cgaaacactc       780
     gcagtcgcag gcaaagatcg cgcagtagaa gtagaagcag agcaagatac gataaaaacg       840
     gcaaatactg ctattaccat tttagattcg gcacacgatg taagcctgaa aaatgtgttc       900
     agccttgcca atggcaaaat aaggaaaact agaagtggta gacacaatag cggctgagtg       960
     ttctacccca gtgcacacat taggccgcca atatcgccta tttgtcaaag accgaaattg      1020
     tggaaaatat tttctggtag atagcggtgc agatttgtcc gttataccag ttgcaaaaag      1080
     ccagaaaggt caaccctctg acttcaatct ttatgccgca aatgggtcag agataaaaac      1140
     ttatggttca aaactgttaa acattgattt aggactcaaa cgcaattttg aatggccatt      1200
     catagtagca gacgtatcaa aaggcatatt gggagccgat tttcttcatc attatgggct      1260
     actggttgac ctcaaaaata aaaagttgat agacaacacc accaaattaa aaattgtagc      1320
     agaagtaacc actgtggatg ctaatgattc agtaagctca ctctatgcaa catgccagtt      1380
     ttcaaaactt ttagagaatt ttcctgatct aactaaacca tctatagtac caaaagcatt      1440
     aaagcataat gtgcagcatt atatcactac atctcctggt ccaccagtat acagtaaggc      1500
     tcgtagattg gacccacata aattgaaaat tgctaaacaa gaatttcaat ttctgttaaa      1560
     taatggtatt atacgtccat caaaatcaca atgggctagt ccactacacc ttgctaagaa      1620
     gccaagtggt caatggcgag tctgtggaga ttatcgccgt ttgaatgaca ggactctccc      1680
     agaccggtat ccaattccac gaattgatga tgtaaatttt atgcttcaaa ataaaaatat      1740
     attctcaaag gtagacctac tcaaagccta ttaccagatt ccactagccg aagaagataa      1800
     gccaaaatca gccgttataa caccatttgg tctctatgaa tttaattata tgccatttgg      1860
     acttcgcaat gcacctagca cattccaaag gtttatacat gaagttgtga gagaactaga      1920
     attttgtttt ccatatttgg atgacattct aatagcatct gaatcaccag agcaacatgt      1980
     tgagcatcta aatttacttt ttgagcagtt gaataagtat ggtcttgtca taaatgtttc      2040
     caaatcagta tttggtgtac aacagctaac atttttagga aatttaatta cacctgctgg      2100
     aacaaagcca gatccagaga gagttgcagc aataatgaac tacaaacgac ccaaaacagt      2160
     tcgtgaactt agaaaattct tagggatcat caatttttat cgtcgacatt tggaacatgc      2220
     agctgaaaac caagccttgc tgaatgattt cctaaaagga acaacaaaaa aggaccgacg      2280
     acatattaac tggacagaag aagcaattgc tcaattcgaa aaatgcaaag aagatctagc      2340
     aaatgctgca cttttgacat ttcctggttt gaacaatcaa cttgcattat ttgtggatgc      2400
     atcagatttt gcagcaggtg ctgcattgca acaatggcaa gatggacagt ggagaccaat      2460
     tggattcttt tcaaaaaagt ttacaacagc acagaagaag tattccacat atgatagaga      2520
     gctgcttagc atctatatgg ctgtcaaata tttcaaatat ctgttggaag gaagagattt      2580
     cattatttat actgaccatg ctcctctaac atatgcattt aaacaaaaga atgaaaaagc      2640
     aacaccaatt caattacgtt acctccagta catttcgcaa tttaccacag acctacgtca      2700
     tatatctggt aaagaaaatg ttgttgctga tggtctatca aggcttgaag aactagttcc      2760
     agttaactat gatgagatag cccaagcaca agaagatgat gaagagcttc gtcaactaca      2820
     gaccagccct catacatcac ttaagttaaa acaccatctg acacatggag gaaaacagct      2880
     atggtgtgat gtgtcaacac aaatcattcg tccttatatt cctaaaccat ttagataccc      2940
     tattttccaa cactatcata atctggctca tccaggcatt aagacaacag taaaaatgat      3000
     ctcatcaaga tttgtctgga tcaatttaaa aaaggatgtc caaaactggg caaaaacatg      3060
     tattgcatgc cagaaaaaca aaatatcacg acacattcaa acaccagtag gacactttcc      3120
     cagtaacgat gaacgtttca aaattgttca ccttgatttg ataggaccaa tgcctccttc      3180
     tgaagaatat atttattgtt taacatgcat tgacagagtt acaaactgga cagaagtagt      3240
     acctcttcgg gacatacaag cagaggcagt agcacaagca tttttcaatt gttggatcac      3300
     taggtttgga acaccatatc aaatagtgac tgatcaaggc aggcagttta actctgagct      3360
     attccgagca ctgtcaaaac tatgcggttg taaccaaaca caaactacag cataccatcc      3420
     tcaatcaaat ggaaaaattg aaagatttca tcgcacactt aaagcagcta tccgtgccca      3480
     tgcaactgcc aaatggactc aagtaatacc tgtaatcctc cttggcctgc gatgctccat      3540
     cagagagaac agtaatgcta caattgcaga aatggtttat ggctcaccca tcagaatacc      3600
     aggtgatttt tttcaagagt atgcaacaaa attggatgca gacttacctc aattcgtttc      3660
     acaactgaag cagtacatga atcgtctgaa gcctgtacaa tactcccaca aagcaaaaga      3720
     aagacctttc atacacaggg atctcaatga gtcaacacat gtatttgtgc gagttgaccg      3780
     agtcaaaaaa gcattagaac ctccatatga aggcccatac gaagtaatag aaagaacccc      3840
     aaaatttttt ggtgttaaaa taaaagacca agtcaagaat atctccattg atcgactgaa      3900
     acctgcgtac ctcatgaatc ataatgagaa gcagcctgaa gacacttcaa ctgaacggtc      3960
     agcccaggtc aaacaaccag acacaaccga cagtggaaaa ccaagaagaa caagatctgg      4020
     tcgtgaagtt cgatttcctg caagattagt tgaagaactg cagtgttaag tgactatatg      4080
     actgagaagg gggtga                                                      4096
//
ID   Gypsy-41_LMi-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   16-MAY-2014 (Rel. 20.01, Created)
DT   16-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-228
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (16-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 228 BP; 76 A; 28 C; 39 G; 85 T; 0 other;
     tgtggggaca cgacaaatta ctatttgtat ttgtattttc tgatctgtat taagctaatt        60
     ggtattctct gttattatct ttgatcatta acaaaaaaga gtacaaaaaa ctgttcttct       120
     cttgtcactg taattacgct tccatggtgt gtgatgtgca agatagaagt aaataaaagt       180
     atggaaatat aagtcttaaa tttaatattt aatgaacagt gtgctaca                    228
//
ID   Gypsy-41_MoPha-I repbase;    DNA;    INV; 4656 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4656
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1118-1118 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..1018
FT                 /product="Gypsy-41_MoPha-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MPKAWIQTLNKDTLIRIARELQLETDGTIDELRRRLR
FT                 TYSASHPDMAQPTLPSAPGPSTAPTISVTPSPDEESPTAPAKIMNQIRKWG
FT                 CHFEGKDPWAFLERLEELQRGYGFTDQQMLLGLSELLRGEALLWWRNNRDA
FT                 WSSWPDFVEDFKTFFLPPRYRLQLCNEIRDRMQRADEGYARYATALTTLMR
FT                 RAGGFTTEAQVEQLYNNMHPDYQLYIRRDEIRQPRELLKRAMEYEQIQLRR
FT                 QTTKKKENTRDTPATAAVYNRDEHCWRCKQRGHTRFDCRRPPRRFCSQCGK
FT                 DGVYTRDCHPPAGNADRAGESAAAARPQE"
FT   CDS           889..4074
FT                 /product="Gypsy-41_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LPTTAPPFLLSMRQGWRIHQGLPPASGKRRPGRGECG
FT                 RRPAPRIDYQPRPHLTVTIAGTPVRALLDTGSEVSFINDATAHKLRSLQFT
FT                 PETSNGRVHLADGTSVQIPGSLKLPIRLAGRTLTHRFSVMPRLENEMLIGV
FT                 DLWARTNIALRPPRRCDTGRPSSTCIFAARPDLRPAPEDDALQRFLQDELA
FT                 EFDKVKGPTTKGEHVIRLKADKMIAPIKQRYRPRNPAMQAVIDAEVDKMMT
FT                 AGVIEPSNSPWSSPVVLVQKKDGRPRFCIDFRKVNEVTECDAYPLPHISAT
FT                 LDKLRGAQYLSTLDLKNGYWQVPLAPESRPITAFTVPGRGLMQFRVMPFGL
FT                 HSAPATFQRLLDSIIGPELEPKVFVYLDDIIVVNQTFQEHLDTLKEVFARL
FT                 REAQLRINPEKCKFCVDKLRYLGHVVNREGIHTDPEKTSAINEWPTPKTVK
FT                 QIRQFLGIASWYRRFVPSFATLAAPLTRLTKKNTRWQWGSEEKGAFHQLKK
FT                 RLTTAPVLACPDFSRKFVLQTDASAHGLGAVLTQFFPEGERVIAYASRTLN
FT                 GAEKNYSATELECLAVVWGIRHMRGYLEGYHFTVITDHQSLRWLQRIEAPT
FT                 GRLARWMLELQQYKFDVKYRKGQLNRVADALSRRTTVNATHLPCRWYQRIT
FT                 SRVTERPADLPDYCIRQGKLYRHSLHDLNFREIPSEDQWKECVPTGQRDEI
FT                 LARHHDAPTAGHLGVAKTIARIARKYYWPGMFKDIARYVHHCQNCATHKAS
FT                 QRKAPGTLRATAVEGPWQQVTIDLVGPLPRSTKGHAWLINMQDRFSKWVEM
FT                 RPLRRATAGEVTQAIAESIIFRHGCPKEIITDNGTQLRSRPLGRMLRDLGV
FT                 EHRLTPAYAPHCNPVERTNRTLKTMIAQYIDRDQRLWDQNIPALQFAYNTA
FT                 VHEATGYTPAYLNHGRELATIAGEGYTGNKPSEEPDSRHQRLQDAFEVVRI
FT                 NLARAFQRQEKYYNLRHRDWRPRIGDLVWKREHRLSQKAAAFNSKLAPKFT
FT                 GPHEIRKILSPVIFDLRSSDGKWHRHVHIQDLKAANTEDETNNSDESESEN
FT                 ENNEV"
FT   CDS           4050..4616
FT                 /product="Gypsy-41_MoPha-I_3p"
FT                 /translation="IRERKQRGMTSTQAREKPAAFSHRPPSRMDDEIIRAI
FT                 DEILDEHPPPAYDPEEPAMDAVPRNNAPPEAPAKKVGVIRQRPNPRRDKVW
FT                 EWLAQIPPPPPRKPAVSRKPVPKKERDAARPEGLLRPCGPEPPPPIPVEIR
FT                 PGCIVEVPHFAAHVSRKYKARLSDGNYILRFNHSGTLRSCRKLPPRNDAT"
XX
SQ   Sequence 4656 BP; 1257 A; 1452 C; 1218 G; 727 T; 2 other;
     tggcgcccga acagggaccg tccgactccg tgagacacta ataaaagaga taccgatgcc        60
     gaaagcgtgg atacaaactc taaacaaaga cacattaatc agaatcgcac gcgaacttca       120
     actcgagacc gacggaacaa ttgacgagtt acgccgacgc ctacgtactt attcggccag       180
     ccatccggac atggcacaac caaccttacc atccgcacca ggaccatcta ccgcaccgac       240
     gatctccgtc acaccaagcc cggacgaaga atctccgaca gcacccgcca agataatgaa       300
     ccagattcga aaatggggct gccacttcga gggcaaagat ccctgggcct tcctcgaacg       360
     actggaagaa ctccagcgcg gatacggttt cacggaccaa cagatgctac tggggctatc       420
     tgagcttcta cggggcgaag ccctactgtg gtggcgcaat aaccgcgacg catggtcgtc       480
     ctggccggac ttcgtagaag acttcaaaac attcttcctg ccaccccgtt atcgcttaca       540
     actctgcaac gagattcgcg accgaatgca gcgggccgac gagggatacg cacgctacgc       600
     caccgccctt accacgttaa tgcggcgagc cggaggattc actacggaag cgcaggtcga       660
     gcagctctat aacaacatgc accccgatta ccaattatat atacgacgtg acgagatccg       720
     gcaaccacga gaattactaa aaagggccat ggagtacgag caaatccagc tccgccgcca       780
     gaccacgaag aagaaggaga acaccagaga cacgcccgct acggccgcgg tgtataaccg       840
     agacgagcac tgttggcggt gcaaacagcg cggccacacc aggtttgact gccgacgacc       900
     gccccgccgt ttctgctctc aatgcggcaa ggatggcgta tacaccaggg attgccaccc       960
     gccagcggga aacgccgacc gggccgggga gagtgcggcc gccgcccggc cccaagaata      1020
     gattaccaac cacgaccgca tctgaccgta acgatagcag ggaccccggt acgagccctg      1080
     ctagacackg gctccgaggt gtcctttatc aacgacgcca ccgcccacaa actacgatca      1140
     ttgcagttca ccccggagac ctcgaatggt cgggtacacc tagcggatgg caccagcgta      1200
     cagatacccg gaagcctcaa actaccgata aggctggccg gtcggacatt gacacaccgc      1260
     ttctcagtca tgccacgctt ggaaaatgaa atgctcatcg gggtcgatct gtgggcgcgc      1320
     acgaatatcg cccttcgacc cccccgacgc tgcgacaccg gccgaccctc gtccacctgc      1380
     atattcgccg ccagacccga cctcaggccc gccccggagg acgatgcact gcaacgattc      1440
     ctacaggacg aattagccga attcgacaag gtcaaaggac caactaccaa gggcgagcac      1500
     gtgatccgtc tgaaagcaga caaaatgatc gctccgatta aacaaagata ccggccccgc      1560
     aatccagcca tgcaagccgt tatcgacgcc gaagtggaca agatgatgac cgcgggggtc      1620
     attgagccgt ccaacagccc gtggagttca cctgtcgtgc tggtacagaa aaaggatggc      1680
     cgacctcgtt tttgcattga tttccgaaag gtgaacgagg ttacagagtg cgacgcatac      1740
     cccttgccgc acatctccgc cacattggac aagttacgag gggcacaata cctatccacg      1800
     ttggatctaa aaaatggtta ctggcaggta ccgctagcac cagaaagccg accgattact      1860
     gctttcaccg tccccggcag gggactcatg caattccgag tcatgccctt cgggctccac      1920
     tccgcaccag ccacattcca acgactcctt gatagcatca tcggaccaga acttgaaccg      1980
     aaggttttcg tctaccttga cgacatcatt gtggtcaacc aaaccttcca agagcacctg      2040
     gacacgctaa aggaagtatt cgcccgactg cgggaggcgc aactgcgaat taaccccgag      2100
     aagtgcaaat tctgcgtcga taaactgcgc tacctgggcc acgtagtcaa ccgcgagggc      2160
     atacacacgg accccgaaaa aaccagcgcc ataaacgaat ggcccacgcc gaagaccgtg      2220
     aaacagatac gacagttctt aggaatagca tcatggtacc gacgcttcgt acctagcttt      2280
     gccactctgg ctgccccgtt gacacggttg acgaagaaga acacacgatg gcaatgggga      2340
     agtgaagaga aaggagcctt ccaccaactg aagaagagac tgacgaccgc ccccgtgcta      2400
     gcctgccccg acttctcccg aaaattcgtc ctccaaacgg acgcaagcgc gcacgggctg      2460
     ggcgcggtcc tcacacagtt cttcccggaa ggagaaagag ttatcgccta cgccagccga      2520
     acactgaacg gtgcagagaa gaactatagc gctaccgagc tggagtgcct agcagtcgtc      2580
     tggggcatcc gtcacatgag aggatacctg gaaggttacc acttcacggt gatcacggac      2640
     caccagtccc tcagatggct gcagcgaatc gaagcaccaa ccggccgcct ggcacgatgg      2700
     atgctggaac tacaacaata caaattcgac gtgaagtatc gcaaggggca gttaaatagg      2760
     gtggccgacg ctctctctcg ccgcacgacg gtcaatgcca cgcatctacc ttgccgatgg      2820
     taccaacgaa tcacgagccg agtaaccgag cgccccgccg acctgcctga ctactgcatc      2880
     cgccaaggaa aactataccg gcacagtttg catgacttaa actttaggga gataccgagc      2940
     gaagaccagt ggaaagagtg cgtacccacc ggacagcggg acgagattct ggccaggcac      3000
     cacgacgcgc caacggccgg ccacctagga gtcgccaaga cgatagcgcg gatcgccaga      3060
     aagtattatt ggcccggcat gtttaaagac atcgcacgat atgtacatca ctgccagaac      3120
     tgcgcaactc acaaagcgag ccaacgaaaa gcaccaggga ccctacgggc caccgcagtc      3180
     gaaggaccat ggcagcaagt gaccatcgat ttggtggggc ctcttccccg atccactaag      3240
     gggcacgcgt ggttaataaa catgcaggac cggttctcaa aatgggtgga gatgagacca      3300
     ttacggaggg ccacggcagg agaggtcacc caagccatcg ccgaatccat catcttccgg      3360
     cacggatgcc cgaaagaaat aattaccgac aacggcaccc agctccgctc acggccactc      3420
     ggaaggatgc tccgcgacct gggcgtcgaa caccgcctga cgccggcata cgcccctcac      3480
     tgcaacccag tggaacggac gaaccgcacg ctcaagacta tgatcgcgca gtacatcgac      3540
     cgcgaccaac gcctatggga tcagaacata cccgcgctcc agtttgctta caacacagct      3600
     gtgcacgaag ccaccggata tacccctgcg tacctgaatc acggacggga gctcgctact      3660
     atagccgggg agggctatac cgggaacaag cccagcgagg agcccgacag ccgccaccaa      3720
     cgcctgcaag atgcattcga ggtcgtccgc attaacctcg cccgcgcatt tcaacgccag      3780
     gagaaatatt ataacttgcg ccaccgcgac tggcgaccga ggatagggga cctggtgtgg      3840
     aagcgtgaac accgcctttc ccagaaggcc gccgcgttta actcaaaact cgcgccgaaa      3900
     ttcactgggc cgcacgaaat aaggaagatt ctatctccag tcatcttcga cctgcgcagt      3960
     agcgacggca agtggcaccg gcacgtgcat atacaagatc tgaaagcagc aaatacggag      4020
     gacgaaacaa acaacagcga tgagagtgaa tccgagaacg aaaacaacga ggtatgacct      4080
     caacacaggc aagagaaaag ccggccgcat tttcgcaccg acctccgagc aggatggatg      4140
     acgaaatcat cagagcgatc gacgagattc tcgacgagca cccgccaccg gcatacgacc      4200
     cggaggaacc cgcgatggac gccgtaccac gcaacaacgc tccgccggaa gcaccggcaa      4260
     agaaggtcgg agtaatacgc cagcggccaa acccgcgacg cgacaaagtc tgggaatggc      4320
     tggctcagat accgccgccg ccaccgcgga aaccggccgt cagccgcaag cccgtaccaa      4380
     agaaggaacg agacgccgct agaccggaag gactgctgcg accatgcgga ccggaaccac      4440
     caccgccgat acctgtggag atccgcccgg gatgcatcgt ggaagtcccc cacttcgcgg      4500
     cacacgtttc gcgcaaatat aaggcgcgtc ttagcgacgg caattacatc ctgcgtttca      4560
     atcactccgg gacgctacga tcatgccgga aactaccacc mcgcaacgac gctacatgat      4620
     gccccaaagt tcgggcatat taacgagggg gagtga                                4656
//
ID   Gypsy-41_MoPha-LTR repbase;    DNA;    INV; 1014 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1014
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1205-1205 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1014 BP; 268 A; 339 C; 240 G; 167 T; 0 other;
     tgtaacgctg gctctataag ccatcacatt cggccgtgca accgccgaaa tcgtcgtccg        60
     agagacgacc agggcgcccc gcgcccgcct aagactcccc actaccgcgg ccgttcactc       120
     cgacgaacga cagcacacag gccgcgcatc ggctgacagc tcgcgcaggc gccttgtgcc       180
     gatgacgaac cgcgcgaagc aaggaaggcc gacgacctcc ggattaaaaa cgatacccgg       240
     ccgttagaaa cgttcgaatt cgcacccgca aatgacgaga cgattccccc cgatacgaca       300
     cccccacgac gagacagggg ggggcctcca ccggggtata aaaagacggc cgaaacggag       360
     gaacaggcag atctcctccg gcgagccgag ctcgcctccg tcgaccagat cttagagaaa       420
     ccagaggtct acgtacagtg gccccggccg gatattaccg gcgttctcac agaaatctgg       480
     aaaactccaa attccttttt cccacacggc ttaagcaagg ggttagggct atcccgcctc       540
     cgccggacat taccggcccg ccgaaatcct accctcccgt cgattcctag cacaaggcta       600
     ccgaggtaag gaagcatcct gccccggccg gacatttccg gctagccgcc gccaaggaac       660
     cgatattcct ccccgaataa cagacgcgcg cgtcccccca ccatcagacg cacatacacg       720
     agactgccga caatcgcgag acgcgccgca gaccccgtac acgtcacgcc aagcgaggca       780
     cgggattctt ttctccgagc gcgaaaacaa cgatctcttt aacaacaagt aaacacgttt       840
     tcggcaatct gcgacaagaa cacgacgcgg acatcttacc tttgttaata taataaacca       900
     tcattatctc aataaataca gttaaaacag actaaagtat tcgaatgtgt ctctgaccta       960
     tttcccctaa ccccgtccac tcgcacgacc gtaggggaag aacaggtcgt taca            1014
//
ID   Gypsy-41_MSe-I repbase;    DNA;    INV; 4809 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4809
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 918-918 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4809 BP; 1775 A; 843 C; 855 G; 1336 T; 0 other;
     ttggcgacga gtaaacgcgc agtaagtaaa atcacaccga atttacgaac ttagtacctg        60
     ctcacggatt ttgatcagca aaatattttg tttgaacaga caaacaatta tgtatatttt       120
     gtgttccgac acttagtata tcctcacgtt tcggtaaatg taagtattta ccataggaaa       180
     taaaattatt gcatacgtac ataaaaaaaa aaaaaaatca tgtttctata caatttaata       240
     caatagtatt ctgctgttga tcaaaaaccc gtttgccaat acctatcgag taataaaata       300
     ctcgatcaaa gattcgttat gttccagcga tgatatcgct tattacttat tataacaata       360
     tgccgcctca ataataattc tgaggatgtg ccaatgcgtt cctgccgaaa ggtaaagagt       420
     gtcgtaaaac aataaggcta agaattacga acaaatacaa agaaagtatt gtgaattctg       480
     tctatcgttg gttaccgggc aaaatatccg actcaaaacg gtgtttactt ttaaatggcc       540
     gtcttgttaa tatatcgaat gactgttttg tttcgtgcag gtacttttaa actgctttag       600
     attttgttta tataatatta aatatgagac agtaccgagt tctcttgtta tgtacgctat       660
     tattatgttt agtacaaaaa atctttagaa caaagcttat tacacacagt tggtgcttaa       720
     agtttaaaca aaaaaaaata aattaataac tgtacacaaa ttttaataat ttcttacaga       780
     tttaagatac attttcttag gtatagatta attgaaatca gtacatttac gaagtcccct       840
     ctgttattta cagatcgtct caacatgtca cacttacaaa taacaacaat cgaaccattt       900
     aactgcgagg gtgatccagt ctctatagga tcccgttggg aaaaatggaa acgcgcttta       960
     gaaatatatt ttatagcaac caatgtcagt gatcataaaa caaagcgtgc gattctcctt      1020
     cattctggag gaatgacatt acaagatatt cattttaata tacccggagc tcacgtgact      1080
     gatcccgacg cgactgatgt atatgaaatt gcgataaaaa attagatgaa tatttctccc      1140
     caaaacagag ctatttattt gaaaggcatg tatttcgttt gatgaagcaa gaggctgacg      1200
     aaaagtttga taaattttaa tccgtcttag acaacaaagc accaaatgta attttgcaaa      1260
     ggaagacgaa agtctcatcg accaaattac agaaaagtgt agctcaaata aattaaggaa      1320
     aaatattttg acgcttggtg acacggcaac gatcgaaaag ataattgtcg aagctaattc      1380
     tttagaaact gtcgaaagac aactaacgga gttccacgat agacagagca atacttcaat      1440
     cagccttaat aaaatcgaca caaaaactac aaaacaatac acaaaaaaag aggttaatac      1500
     ctgctgccgg tgtggtagta aaaatcacaa aagtgatagt agtacctgcc ctgcaagcaa      1560
     tgcaaattgc atcaaatgtg gctacagagg ccatttccaa aaccagtgta gaacaagggc      1620
     caataaaaga aagagttccc acctctcgtc aaatgacaat aataaaacta agcagcaaaa      1680
     aacgaaagcc acaaaaaata caactgtgga ctatatattt cacatcgatg gcgatgacac      1740
     aattgactgc caggtaggtg gagttaacat caaaatgctt attgattctg gtagcaaatc      1800
     caatatcatt aatgataaaa cttgggacca tatgaaacaa tcaaatgttg tagtcttcaa      1860
     ccaacaaaaa acttcagaca aaatatttcg agcttacagt gccaaatatc cgttaaaagt      1920
     tttgggtttg tttgatgcac agataaaagt tggtcccaaa tcattaaaat caacatttta      1980
     tgtaattgaa aatggatcaa agaacctttt gggaaaagaa acagccattt ctttaaacgt      2040
     ccttaaattg ggattagaca tcaatgccat tgagcaacaa caatttccca agttcaaaga      2100
     tatccaactc gaaatcacca ttgataaaac ggtaactcca gtttgccaac catatagacg      2160
     agtccctatt cctctagaat ctaaaataaa cgataaaata gacgaactgg taaaatggac      2220
     atcattgaac cagtagacaa gccatcatct tgggtttctc ctatggtacc ggttctaaaa      2280
     cctgatgacg atatacgtat ttgtttagat atgcgtgctg ctaataaagc tattattaga      2340
     gaaaatcacc ctttacccac catggaacag ctaattccca aattaggtaa agctactttt      2400
     ttttcaaaat tagatattaa aaatgctttt catcacgttg aacttaaaga aagtagtaga      2460
     aatataacaa ctttcataac tagcaaaggg cttttccgat acaaacgact aatgtttgga      2520
     atatcatgcg cacctgaaca ttttcaaaaa attatggaaa aaatgttatt accatgccaa      2580
     ggtgtggtaa atttcataga tgatattgtt gtctatgggt gcgatgaaaa agagcataat      2640
     gataggctcc aacacgttct aaaagtcctc aaagagaaca acgtattatt gaacaaaaaa      2700
     aagtgcgttt tcaaaacaaa atctatccag ttcctgggcc ataatctttc gtcagtaggc      2760
     gttaaaccac ttaataaata tatcaaagca atacaaacat ttagaccacc ggaaaccata      2820
     gaagaaatcc aaagcttcct tgggttgatt aatttcgtgg gaaagtggat tccaaattta      2880
     tcaaccttaa cggaacccct tcggcagtta cttaagcaac aagggcacaa aaagactaac      2940
     atttcgccgc tgtggcaaaa taagcaagta aaggctttcg atgaattaaa aaagtctctt      3000
     gccaaaattc ctacccttgg ttattatgac ccaaaagatc gtacccaagt aattgccgat      3060
     gcaagtcctg taggtttagg agcagtactg ctccagtacg ataatagagg accccgaata      3120
     attgctttcg ggaataaaag tttaactgac gttgaaaagc gatattgcca gaccgaaaaa      3180
     gaggcattag ccttagtctg ggcggttgag cattttcata tgtatctata tggtaaacat      3240
     tttgagctta tcacagatca taagcctctt gaaattatat ttggaccgcg atcaaagcca      3300
     tgtgcacgaa tcgaacgttg ggttcttcga ttacaggcat atgactataa agtgatctat      3360
     aaacccggga aatcaaacat tgcagatcca ttatcccggc tgtgtaaaaa tagctccaaa      3420
     ctggagagtc cgtttgaaga tgaatatcat gtcaaccaga tagttcaata cgcgcgacct      3480
     gtagcattat ccctaaaatc tatcgttgaa gcatcaaatg aggataacga tataaaatta      3540
     gtcacagatg ccttaatgca taacgtttgg gatgcgacca ttaataacta caagttattt      3600
     caacatgagc tatggttaca tgatggtgtc ttgctaagag gaaataaaat agtgattcct      3660
     attaaactta gaagacaagt cttggcagct gctcatgagg gccatccagg tattgtcaat      3720
     atgaaagcta ggctacgctc aaaagtttgg tggcctaaaa ttgataaaga tgcggaaaac      3780
     actgtaaaaa actgtagagg ctgtacttta gtttcagccc ctaatccacc agtgcccatg      3840
     aaacgacgtg aactcccgtt gaaagcctgg atggatacag ctattgactt tctgggtccg      3900
     ctgccaagtg gagattattt atttgtgatt attgactatt atagtcgata caaagagatt      3960
     gaaattatga aatctatcac tacacatgaa actataaatg tattaaaaaa aatcttctca      4020
     cgaactggat atccaactag tattacagct gataatggcc gacagttctg tagccaagaa      4080
     ttcaaaacat tttgtaccga acatggaatt acgcttttta atactattcc ttactggcca      4140
     caacaaaacg gtgaggttga gaggcaaaat cgagatattc tcaaaagact gaagataagt      4200
     cagtgcgaga aatcagactg gagagatgat ttgttaaaat atttaatgat gtataacagt      4260
     acacctcact cctccacagg aaaatcccca tccgaactgt tctacggaag gcaatttaga      4320
     gacaaactac cctttttaat agacctcgaa aataattatg attccgaaat ccgagataga      4380
     gataaactaa tgaaagaaaa aagtaaatca aacgaagaca ggaaaagaag agctgctatt      4440
     agagaattag agattggtga aaaggtatat gtaaagaact taataaaaga aaacaaactg      4500
     gttccagaat ttagccccac acctcacact gtaattaatg ctgaaggaag cgacataaat      4560
     gtacgaaatg aagaaacagg ccaggagtat aggagaaaca tagtacattt gaagaaggta      4620
     gaaggtcaat ggaaagttat tggtgataaa gacactcctg ataaagacaa atctgattaa      4680
     agacatttaa tttctaaata tacttgataa tgttattttg atataagtat aaaaaatata      4740
     acgctatatg cataacgagg ttgattaaag atatttggtt taatatttta tttttataaa      4800
     aggaagaga                                                              4809
//
ID   Gypsy-41_MSe-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-163
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 967-967 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 163 BP; 43 A; 37 C; 39 G; 44 T; 0 other;
     tgtgatgtat tgatattaaa gatcagcaca gtccaacggt aacgcaacac ttccgagccg        60
     ttggcggcgc agggcggacg tctccggtgt gctgtgctgt acttactgtt tacgttattg       120
     ttttatttca ctaccaaaga acacataaag tgaggacacc aca                         163
//
ID   Gypsy-41_SiCu-I repbase;    DNA;    INV; 5448 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5448
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5062-5062 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           457..1578
FT                 /product="Gypsy-41_SiCu-I_1p"
FT                 /translation="MDEVKQLLANLEAKVTKSVNDVKTAVLGITNMQATLQ
FT                 TTMSDLKTKIDAVNAIVIDNQKEIATLKVTKGSSSSGSSKTASTTSSSSPP
FT                 PPTAPIDAAQGLPFPKYLPGKMTPQSFIIEVEEYLTLKGIPNASWHMLAGR
FT                 LFEDKSDIANWWRSKRASITDWTTFTTAFYKYEDCDATKDLLKQKLYHTNQ
FT                 KLDDAFESFAWSIHTLMKKINPAATEDEIVDRIMNSCLPDVANEIKIKCST
FT                 VEDLICIARPTIYTINKIRTYERKPLLRARNTDPLPTFNKQNGKHFSKHKH
FT                 DKQQHNSSYEKDLKDNDSSKQNSSASPDKNTSEQTETPFCDYCHKKWHVES
FT                 ECRKKKYDNKRAKNSSSSSPTGADNTDQGNE"
FT   CDS           1560..4748
FT                 /product="Gypsy-41_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="HRPGKRMKESSTKESHLLSIEXSPKLTPKAYIHFSTH
FT                 KQHALLDTGASDCFITDKVAKQLNAEIQYDELPSVTLGNGTTIKPTGACVL
FT                 NFKFLSKDFSYRFLILNNLPFPVIIGTNFMMHAKLIIDMAEASFYFSYKPQ
FT                 KQVKFTNADAILCALQGLNDEQKAQLHKLLAEFPTVMNDKIGCTDIVQCEL
FT                 KVDGPPIAQKPYPTSYVKRQAIKEXVTKMLKLGIIRPSLSEWASPIHMKKE
FT                 TSGYRFCVDMRKVNSKMKNDPYPIPRIDMMXQKLGEACFISKIDLRKGYWQ
FT                 VKMHPDSVQYTAFICDEGKYEFTKMPFGIKTAPSIFQRLMNRIFXXSRGQF
FT                 LEIYLDDLVIFSKTWKDHLLHIKHVMQKLREAKLTANVEKCSFGETAINYL
FT                 GFKLTANGIESDPDKTKPIRDYRAPKNSSQVRKFLGACGWYRHFIPHFSDI
FT                 AEPLIELTRNGVDFVWGKEQLESFNKLKDEICNATSLAFPDFTKTFILRTD
FT                 SSDLGLGGVLAQQTVDGHERPIAFASRTLTKTERSYHATEKECLSIIWNLS
FT                 KFAHYLDGQEFILETDNKALVWLNTMKDVNSKFMRWALKIQDFSPSIKHCP
FT                 GRLNLVSDALSRNPVGEAEEEDDKSVMDPPIDHEHLTILSTITSDITLDII
FT                 ANEQIKNDEITILKTNLPPGMIIDNNILYKVTKTGIKLPYIPQSLREKVLT
FT                 YFHNSPHSGHMGIRKTIKRILQRVFWLGIQTDIYAYIKSCETCQKVKNPST
FT                 KPHGQLQNTKAYGCWDLLAIDMVGPLPTTQRKKTVLLVVTDHFSKWVELYA
FT                 LKDAKAPTVAQVLEQEVFCRWGAPKALLSDNATNFRSNVFDKLCKSWGIKH
FT                 VYTTTYHPQSNITERVNRNIRSILSSYISSKQRKWDEFLATTALALRTAIS
FT                 DTTGFSPAMLTFGRELRLPFDNQISSDDNDIHFQSRLDYQTELVQKLQSIY
FT                 AQAKKNIDKAHMQQQKYYNKRHKLLTLKEGDLVLLRTHYLSDKAKGFTKKF
FT                 AFRWSGPFRVNKACSKVTYELXTTDSQENIGIHNVKNLKKYYDKPSDVVVP
FT                 TSDGID"
XX
SQ   Sequence 5448 BP; 1916 A; 1181 C; 962 G; 1342 T; 47 other;
     taatggcgcc caactcctaa agcgtcagta taaaaatact tagaaattta aaaaaagtac        60
     acatttcgaa gtaacaaaaa aaaagtcaag ctatttcaga aattcacact tcacacattt       120
     caagtattac ttactgtcgt tatttaagta gaattgaact gaaaaaaagg ctacaaaaat       180
     atttcctctg attttctttt caagctgaaa ctgaaactat acactgtgcg atttctttag       240
     agcaaaaatc tttcttaaga aacaaaaata atctaaaaac cttaaaatat aaaccgagaa       300
     aacataatta cacataactt aaaaggtaga cattttgcat actgcttctc ttgacctgtc       360
     aaggtaaaaa caaactaaaa atataagttt ccattccttt cattttaaaa gctttatttt       420
     ctttcgcgtt acgctcagtg cattgcttat ttcacgatgg acgaagttaa acaattactt       480
     gcaaatctag aagcaaaagt tacaaaatcc gttaacgatg taaaaacagc agttttaggt       540
     attacaaata tgcaagcgac attacaaact accatgtcag acttaaaaac gaagatagac       600
     gctgtaaacg ctattgtaat cgataaccag aaagaaatag caacacttaa agtaacaaag       660
     ggctctagta gcagtggtag cagcaaaact gcaagcacaa cttcatcatc ctctcctcca       720
     cctccaacag caccaattga tgcagcgcaa ggattgccat tcccmaaata cttgccaggc       780
     aagatgacac ctcaatcatt cattattgag gtggaagagt acttaactct waaaggtatc       840
     ccaaacgcaa gttggcacat gttggcaggc cgtcttttcg aagacaaatc agatatwgca       900
     aattggtgga ggtcaaagag ggcaagcatc actgactgga ctacgttcac tactgctttt       960
     tacaagtatg aagactgtga tgctacaaaa gacttactca agcaaaaact ttatcataca      1020
     aaccaaaaat tagatgatgc atttgagagc ttcgcctgga gcattcacac actaatgaag      1080
     aaaataaacc cagctgctac tgaagatgag attgttgacc gcataatgaa ctcctgctta      1140
     ccagacgtag caaatgaaat taaaataaaa tgctcaacwg ttgaggacct aatttgcatt      1200
     gctcgtccga ccatttacac tattaacaag atacgcactt acgagcgtaa gccgctgttg      1260
     agagcacgga acacagatcc gctcccaacc ttcaataaac aaaacggtaa acatttctcc      1320
     aaacacaaac atgataagca acagcacaac tcatcatacg agaaagattt aaaggacaac      1380
     gacagtagca agcaaaactc atctgcatca cctgataaaa acaccagtga gcagactgaa      1440
     actccgtttt gtgattattg tcacaagaaa tggcatgtcg aaagcgaatg ccgtaaaaag      1500
     aagtatgata acaagagagc taaaaactca tcttcatcat cacctactgg cgctgataac      1560
     acagaccagg gaaacgaatg aaggaaagca gtacaaagga gtcacacttg ctttccattg      1620
     aawctagccc caaactgact ccaaaagcat acatacattt ctcwactcac aaacaacatg      1680
     cactattaga cacaggwgcc tccgactgct tcatcacaga taaagtcgca aaacagctga      1740
     acgcagaaat tcagtacgat gaacttcctt ctgttacgct cggtaatggt actactataa      1800
     aacctacggg wgcatgtgtk ttaaacttta aattcttatc aaaagacttc tcktatcgct      1860
     tcttgatact gaataatcta ccgttcccag tcatcatagg tacaaacttc atgatgcatg      1920
     caaaacttat aattgatatg gcwgaagctt ctttttactt ttcctacaaa ccacaaaaac      1980
     aagtaaaatt tacaaatgct gatgctatct tatgtgcact acaaggtcta aacgacgagc      2040
     agaaagcaca actacacaaa ttactwgctg aatttcctac ggtgatgaat gacaaaatag      2100
     ggtgcactga cattgtacaa tgtgaattga aggtagatgg gcctccaatt gcacaaaaac      2160
     cctatcccac ttcctacgtt aaamggcaag ccataaaaga gcawgtaaca aaaatgctga      2220
     aattaggcat catwcgtcct tcactatcgg aatgggcatc mccaattcac atgaaaaagg      2280
     aaacaagcgg ctatmgattc tgcgttgaca tgcgcaaagt aaatagtaaa atgaaaaatg      2340
     atccttatcc aatcccacga attgacatga tgwtgcaaaa gctcggtgaa gcttgcttca      2400
     tttcaaaaat tgatctgcgc aaagggtatt ggcaagtwaa aatgcacccw gactcagttc      2460
     aatacacagc cttcatttgc gatgaaggwa aatacgaatt tacwaaaatg cctttcggaa      2520
     tcaaaactgc gcccagcatt ttccaaaggt taatgaacag aatatttkcc tsttccagag      2580
     gtcagttcct tgaaatttat ctggatgatc tggtmatctt tagcaaaacg tggaaagacc      2640
     acttgctaca cattaaacat gtcatgcaaa aattaaggga agcwaagctm acggcaaacg      2700
     twgaaaaatg ctcatttggt gaaacagcca taaattactt aggctttaag cttactgcaa      2760
     atggtataga aagtgacccc gacaagacaa aaccaattcg tgattatcgt gcccccaaaa      2820
     attccagtca agtaagaaaa ttcttgggag catgtggatg gtaccgtcac ttcatwcctc      2880
     atttctccga cattgcagag ccwttaatwg agctcacacg caatggtgta gactttgtat      2940
     ggggcaaaga gcaacttgag tcatttaaca aattaaaaga cgaaatatgt aatgcgacct      3000
     ckcttgcctt tcctgatttc acaaaaacct ttatcttaag gacggacagc agtgacctgg      3060
     gacttggagg agtcctagcg caacaaacag tcgacggcca cgaaagacca attgcttttg      3120
     ctagtcgcac actcacaaaa acagaacgtt cctatcatgc aacggaaaaa gaatgtttaa      3180
     gcataatatg gaatctctca aaatttgctc attaccttga tggacaagag tttattcttg      3240
     aaacagacaa caaagcactt gtatggctaa atactatgaa ggatgtgaac tcaaaattta      3300
     tgcgctgggc tctaaaaatt caggattttt ctccctccat aaagcattgt ccaggtagac      3360
     taaatcttgt gagtgatgcg ctaagcagaa accctgttgg tgaggcagag gaagaagatg      3420
     ataaaagtgt aatggatcca cctattgacc atgaacacct gactatcctc tccaccatca      3480
     cctccgacat aacgttagat atcattgcga atgaacaaat taaaaatgat gaaattacta      3540
     ttctgaaaac aaatcttcct ccaggaatga ttatcgacaa taacatcttg tataaggtaa      3600
     caaaaacggg aataaaactc ccatacatac cgcagtcatt acgtgaaaag gtacttacat      3660
     attttcacaa ctctcctcat tcgggtcata tgggtatacg aaaaactatt aagcgtattt      3720
     tacaacgcgt cttttggcta gggatacaaa ctgacatata tgcatatata aaatcatgcg      3780
     aaacctgtca aaaagttaaa aatccaagta ctaagccgca tgggcagttg cagaatacaa      3840
     aagcctacgg ttgctgggac ctgctcgcaa tagacatggt aggccctctt ccgacaactc      3900
     aacgtaagaa aactgttctt ttagttgtta ctgaccactt cagtaaatgg gtggaactct      3960
     acgcattaaa agatgcaaaa gcaccaactg tagcacaagt gctggagcag gaagttttct      4020
     gccgttgggg agctccaaaa gctttactca gcgataacgc cacaaatttt cgcagtaatg      4080
     tttttgacaa attatgtaaa tcatggggaa tcaaacatgt atatacaact acataccatc      4140
     cccaatctaa cataactgag cgagtaaatc gtaatatccg cagtatcctg tcttcgtaca      4200
     tatcttcaaa acagcgcaag tgggatgagt ttttggccac cacagcgctt gccttacgaa      4260
     ccgctatctc tgataccact ggcttcagcc cagcgatgct gactttcggt agagaactca      4320
     gactaccgtt tgataaccaa attagcagtg acgataacga catmcacttt caatcacgac      4380
     tkgactacca gacwgaactc gtacaaaagt tacaaagcat ttacgcacaa gccaagaaaa      4440
     atatagataa agctcacatg cagcaacaga aatactacaa caaacgacac aagctattaa      4500
     cgctaaaaga aggcgatcta gtactactac gaacacacta tctttctgac aaagcgaaag      4560
     gttttacaaa gaaatttgca ttccgctgga gcggaccgtt ccgagttaat aaagcttgta      4620
     gtaaagtaac ttacgaattg amtactactg acagtcaaga gaacattggt atccacaatg      4680
     tcaaaaacct waagaaatat tatgataagc catccgacgt agttgtacct acctccgacg      4740
     gcatagatta aaataaaaca catctagaat aagatagtta agccataata gwatagtgca      4800
     tgaagcaaaa tcacttcatt taaactcaag ccaagctagt agtagcaaca tttttttctc      4860
     tcmagacaat cttccacttt tcccaataaa cttaccttac gatattaatc atgaataata      4920
     ttccatattg taagaaamta ttaaatattc acaacgttcc tgtaaaagcc tacaaacaat      4980
     tgccaggtga acatgcacag gaattcgctc accgaattca tacaagcatg tgtgaagtgc      5040
     gtggggtgaa cgagattccw gacaacaaaa tcttcccctg ggtcatcwct ggactacatg      5100
     actctgtgaa gcgactcctg ccaaaaccaa ckccaaagac tcttggtgaa ctttttacgg      5160
     tgtacgacgg gatagcwcaa cagatacctc cggaagatga cttttgggcc atcaagcggc      5220
     tgatggaatt cagtccccca cgagtcattc tctcaccagc mcgcgacgam gatcctgcct      5280
     ttcccatcaa tcaaaaggaa tgctacaaat gtggtgaaat gggacatttt gcwaaacatt      5340
     gtagcaatcc ccgcaaccgt gccatccagc caaagaagaa aaaccggcga cgacgacgag      5400
     cactcaaacg actccaaaag ggtaaagctg cgcttggggg agggactc                   5448
//
ID   Gypsy-41_SiCu-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-491
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5118-5118 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 491 BP; 136 A; 102 C; 89 G; 158 T; 6 other;
     tataaggatt ctccttatta tmatcattgt agtgtagagt gtgaacggtg aaggagcamt        60
     gactccagka tttacatawt actcgttctg ttacttatta tacggctgaa tataaaatac       120
     tattatawtt ctgtacacgt actctggctg cakgacgcag tctggtacgt ccgaactcta       180
     ggtgtgaaaa ccatataaat aggagtgagc ttctctcact cctcagctaa tcttcgctca       240
     aacctcatgt ctgttgtgtg gattatcggg ttggactacc cagtgtgact ctctagagac       300
     ggagttacac gttgaagcac gcagagtatt aaagatgtac aattttccta aacttctctt       360
     tctgtaaata aaacgtacat gttgtatagt ttcagccaaa tcttttgatt tccgaaccga       420
     caccttattt tctacatttc atgctggagc gtagttgctt aaaatcatta ctctaaacgc       480
     actaccccac a                                                            491
//
ID   Gypsy-41_SiOr-I repbase;    DNA;    INV; 5920 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5920
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 375-375 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1799..5482
FT                 /product="Gypsy-41_SiOr-I_1p"
FT                 /translation="MQEIFYNLPGANIDEDPTSESLDIFKVALEKLDEYFS
FT                 PKQSRVYERHXFRLIKQDKEEKFEKFLVRLRKQADNCQFANVDEQLIDQIT
FT                 EKCTSIELRKKILAMGDAVTLTQIVMEANSLETIERQLSEFREKQPGSSLS
FT                 LPTVNEVSYKQNLKGKRKXLNAKSCSRCGSKDASHNACPALNVICHKCKFK
FT                 GHYEKYCKSTRIFRPTNKSATTGPPKKKFKPGQNDRGVHNVSDAADDTEYV
FT                 FHLDGDEDTVTCEVGGVNVDMLIDSGSRSNIIAEKSWEILKKSGIVVFNQT
FT                 KQPNKVLFAYGAKEPLNVLGSFDAKIKLGASQENATFYVIKNGKRNLLGKT
FT                 TAISLGVLKIGLNISNVIELEPFPKFKNVLIHIPIDKTVSPASQPYRRVPI
FT                 PLEAKINAKLDELLKLDIIEKVNGPSEWVSPMVPVLKENGDVRICIDMRKA
FT                 NTAIQRENYPLPTIDALLTNFRKAKFFSRLDIKNAFHQIEIAPSSRYITTF
FT                 ISSRGLYRYKRLLFGINAAPEIFQKTMETMLLPCNGTVNFIDDILIYGTSE
FT                 EEHDKRVSLTLKILKENNVLLNKEKCVFKISEVKFLGHILSSQGIRPLDSY
FT                 VGVVKSFRAPKTLDELHSFLGLVNFIGKWLPNLATLTEPLRIILKQKLSKN
FT                 ADISIFWTDKQTQAFNELKVCLSQIKTLGYYDPMDRTQVIADASPVGLGSV
FT                 LIQFYNSGPRIIAYGNKSLTDVEKRYCETEKEALALVWAVEHFKTYLYGKD
FT                 QFELITDHKPLETIFGPRSRPCARIERWVLRLQSFNFKIIYRPGKNNIADP
FT                 LSRLCEGQVQASVESHDFVHQIVAHSCPVAVTVKEIRENTESDQEILGLKA
FT                 GIEQDRWSDAIRHCQVFKEEFCFSDGILLRGTRIVIPEKLRXRVLESAHEG
FT                 HPGIVAMKSRLRTKVWWPRIDEQAEKIVKACKGCTLVSSSNPPYPMKRRQI
FT                 PTAPWIDVAMDFMGPLPKGEYLFVIVDYFSRYKEIKIMKTITSTTTINVLK
FT                 EIFSRLGFPVSVTCDNGKQFTSEEIKSFFKEKGIKLYHSIPYWPQMNGEVE
FT                 RQNRDILKRLKISQSLKTNWHEELVDYLMMYNSTPHATTGKTPSELFYRRQ
FT                 FRDKLPTITDNQHNVFDDETIDRDRVQKEKGRENMDRXRKATDNIDINIGD
FT                 KVYQKNLIKSNKVTPEYDSTPHTVIKKLGGDVVIQDAQTGQELRRNIVHLK
FT                 KLEGQWQVVNNEXNRKKK"
XX
SQ   Sequence 5920 BP; 2393 A; 842 C; 1069 G; 1604 T; 12 other;
     attggcgacg aggactaatt aagaaaatta ccagtaagta caagtaaaaa aaaaacttag        60
     agaagtataa caatttgggg aattttgatt agtttgtcac tagtaacgaa acataaagcc       120
     ataaaaaata tatagtaata acaataataa taaagacttt cttaataaac gcattacctt       180
     ctaattatcc tgtatactac ttatcgtaag ttatgtttaa ataaaaatat atgtaggtat       240
     agtagttact tatataaatt aagtaagcgt gtataaaata aacaagaaaa taaaaagaac       300
     tttgactaag ataaaactgg tgttcctagg actagaaaat aaataataat atagccatat       360
     actaacttat taactaattc tatactatag ataaattcta atcagagtta taggtaaggg       420
     tgtaagaaaa gacctggaaa aaaataaggg tataaagaaa tacctatata aaaaaaaaag       480
     agagcttcta ttttttttaa atgaaaataa tagaagctct ggaaaatcga gtatagagaa       540
     atacttaaaa aatatatata catatatata acaatgctgt attaagaaat acagcgtgga       600
     aaaggtataa agaaatacct aaataataac aaagatgctg tattaagaaa tacagagtgg       660
     gaaaagtata aagaaatact taaataatat caatatgctg tattaagaaa tacagagtgg       720
     aaaaggtata aagaaatacc taaataataa caaatatgct gtattaagaa atacagagtg       780
     ggaaaagtat aaagaaatac ctaaataata acaaatatgc tgtattaaga aatacagagt       840
     ggaaaagtat aaagaaatac ctaaataata tcaaatatgc tgtattaaga aatacagagt       900
     gggaaaggta taaagaaata cctaaataat aacaaatatg ctgtattaag aaatacagag       960
     tgggaaaagt ataaagaaat acttaaataa taacaatatg ctgtattaag aaatacaggg      1020
     tggaaaaggt ataaagaaat acctaaataa taacaaatat gctgtattaa gaaatacaga      1080
     gtggaaaagt ataaagaaat acttaaataa taacaatatg ctgkattaag aaatactgag      1140
     takgaaaggt ataaagaaat acctaaataa taacaaatat gctgtatwaa aaaatacaga      1200
     gtgggaaaat tataaagaaa tacttaaata ataacaatat gctgtattaa gaaatacaga      1260
     gtggaaaagg tataaagaaa tacctaaata ataacaaata tgctgtatta agaaatacag      1320
     agtgggaaaa ttataaagaa atacttaaat aataacaata tgctgtatta agaaatacag      1380
     agtgggaaag gtgtaaagaa atacttaaat aataacaaat atgctgtatt aagaatacag      1440
     agtagaaaag gcataaagaa atacttagat aataataaaa taagctgtga gaaatgcaga      1500
     gagtaaatag aactagtgtc atawaaaaaa aataaaataa aggtatatgt cgtaattatg      1560
     taatagttac tagtaacaaa atataaacaa aattaaatac attatgtatt gcwaaataaa      1620
     atatctaaat gcctataggt ggtatataaa aaaaaatgtt tattttagaa aatggcaaac      1680
     atctctcctc ttgaagcgtt tgattgtgat ggagatgcag gatcagtagg actaagatgg      1740
     caaaggtgga aacgagcatt aagtttatac ttggaggctg caaatatgct gactgggwat      1800
     gcaagagatt ttctataacc ttcctggggc aaatatagat gaagacccta ccagtgaaag      1860
     cttagacatt tttaaagtgg cattagaaaa gcttgatgag tacttttcac ctaagcaaag      1920
     cagggtgtac gagagacatm tgtttcgact aattaagcaa gacaaagaag aaaaattcga      1980
     aaagttcctg gtgaggttaa gaaagcaagc cgacaactgt cagtttgcaa atgtcgacga      2040
     gcaacttata gaccagatca cagaaaaatg cacatctata gaactgagga aaaaaatcct      2100
     agctatgggc gatgctgtca cgctgacaca aatagttatg gaagccaatt cattggagac      2160
     catcgagagg caactatcgg agtttagaga aaaacaacca ggcagttcat tatcattacc      2220
     tacggttaac gaagtgtcat acaagcaaaa tcttaaaggg aaaagaaaak atttaaacgc      2280
     aaaatcgtgc tccagatgtg gttccaaaga cgctagccat aacgcctgtc cggcattaaa      2340
     cgtcatctgc cataaatgca aatttaaggg gcactatgaa aaatactgca aatcaacaag      2400
     aatattccgt cctactaata agtcagctac aacaggacca ccaaagaaga aattcaaacc      2460
     tggacaaaat gataggggtg ttcacaatgt atcagatgca gccgacgaca ccgaatacgt      2520
     atttcatcta gatggcgacg aagacacagt cacctgtgaa gtaggcggtg ttaatgttga      2580
     catgcttatt gattcgggaa gtaggtcgaa tataatagct gaaaaatctt gggaaatcct      2640
     aaagaaatcg ggaattgtag tttttaatca aacaaaacaa cctaacaaag ttctctttgc      2700
     atatggagca aaagaacctt taaacgtctt aggatcattt gatgctaaaa taaaactagg      2760
     cgcaagccaa gaaaatgcaa ctttttatgt aataaaaaat ggcaagagaa atttgttagg      2820
     caaaactaca gcgatctctt taggagttct taaaattggt cttaatataa gtaatgtaat      2880
     agagttagag ccatttccaa aatttaaaaa cgtgttgata catattccaa tagacaaaac      2940
     cgtcagccct gctagccaac catataggcg ggtgcccatt ccgctggaag ctaaaatcaa      3000
     tgcgaaatta gatgaattac ttaaattaga tataattgaa aaagtcaatg gaccatcgga      3060
     atgggtatcc cctatggtgc ctgttttaaa ggaaaacggg gatgtcagaa tatgtataga      3120
     catgcgcaaa gcgaacactg cgatacaaag ggaaaattat cctctaccca caatagacgc      3180
     acttttaaca aattttcgta aagccaagtt tttttcacga ctagatatta aaaatgcatt      3240
     tcatcaaatt gaaatcgccc cttcatccag atatataacc acatttatat ccagcagagg      3300
     gttatataga tataaacgtc ttttatttgg gataaacgcg gccccagaaa tttttcaaaa      3360
     aaccatggaa acgatgctgc ttccatgcaa cggaacggtt aactttatag acgatatatt      3420
     aatatatggt acatcggaag aggaacacga taagcgggta tctttgactt taaaaatttt      3480
     aaaagaaaat aatgttcttc taaacaaaga aaaatgcgta tttaaaattt ccgaagtaaa      3540
     atttttgggg catattttat cctctcaagg aatacgacca ttagacagtt acgtaggggt      3600
     ggttaaatca tttagagctc ccaaaacttt agacgagttg catagtttct tggggttagt      3660
     taattttatt ggaaaatggc taccaaattt agctacttta acagaaccgc ttagaattat      3720
     tttaaaacaa aaactgtcaa agaacgctga catttcaata ttctggactg ataaacaaac      3780
     ccaagctttt aatgaactta aagtctgctt atctcaaatt aaaacactag gctattatga      3840
     tccaatggat cgtactcagg tcattgcaga tgcaagtcca gtaggtctag ggtccgtact      3900
     tattcagttt tacaatagcg gtcctagaat tattgcttat ggaaacaaaa gtctaacaga      3960
     tgtagagaag cgctattgtg aaaccgaaaa ggaggccttg gccttagttt gggccgtaga      4020
     acattttaag acgtatctgt atggtaagga ccaattcgaa ctaataacag accataaacc      4080
     actcgaaact atttttggtc ctagatctcg tccctgtgca cgtatagaac gttgggtctt      4140
     aagacttcag tcgtttaatt ttaaaataat ttatcgtcca gggaaaaata acattgcaga      4200
     tccgttatcc cgactttgtg aagggcaagt tcaagcatcg gttgagagtc acgattttgt      4260
     ccaccaaatt gtcgcacact cttgtcctgt cgctgtgaca gtaaaagaga ttagagaaaa      4320
     taccgaatct gaccaagaaa ttttaggact aaaagcaggc attgaacaag atcggtggag      4380
     tgatgctatc agacactgtc aagtatttaa agaagaattc tgctttagtg acgggattct      4440
     cttaagaggt acgagaattg taattcctga aaaacttaga maacgagttc tagaatcggc      4500
     gcatgaaggc catccaggaa ttgttgcaat gaaaagtaga ctacgtacca aagtttggtg      4560
     gcccagaatc gacgaacaag cagaaaagat cgttaaagca tgtaaagggt gcacgttggt      4620
     atcatcttcc aatcctccct atcccatgaa aagaagacaa atcccaacag ctccctggat      4680
     agacgtggcc atggatttta tgggtcctct gccaaaaggg gaatatcttt ttgttatcgt      4740
     agactatttt agcagatata aggaaattaa aatcatgaaa acaataacgt cgacaaccac      4800
     cattaatgtc cttaaagaaa ttttttcaag gctgggtttt ccggtatcag taacttgtga      4860
     caatggcaaa caattcacaa gcgaagaaat aaaatcattt tttaaggaaa aaggcataaa      4920
     attatatcac tcaattccat actggcctca gatgaacggg gaggttgaac gacagaatag      4980
     ggacatcctc aaacgtttaa agataagcca aagcctcaag acaaattggc atgaggaact      5040
     ggtagattat cttatgatgt acaacagcac acctcatgca accacgggga aaactcctag      5100
     cgaattattc tatcgacgtc agtttaggga caaattacca actatcacag ataaccaaca      5160
     taacgttttt gatgatgaaa caatagacag ggatcgagta caaaaagaaa aaggtaggga      5220
     aaatatggat aggmaacgaa aggcaacgga taatattgac ataaatattg gcgataaagt      5280
     atatcaaaaa aatttaatta agtcaaataa agtcacacca gaatatgact caacaccaca      5340
     cacagtaatt aaaaagctag gsggtgatgt tgttattcaa gatgcgcaaa ccgggcaaga      5400
     gttaaggcga aacatagttc accttaaaaa attagagggt cagtggcaag tagtaaataa      5460
     tgaasgtaat agaaaaaaaa aatagaaaaa aaaacggtca taggtcaact aacaaattta      5520
     ttaaccaaat aaataaataa ataacaataa ttaaacaacc aaataataat aaaaaaataa      5580
     taatataaat aaataaataa tataagaaat catttattta cagatttcat taaacaagat      5640
     gagaaatacc tgttctaaag atgggggtga aggttgttaa ttatcctatt attattatta      5700
     gttttctaga taatattgtg ttaccattat tattatatat tgttatattg ttatatatta      5760
     tgtattgcta ttatattata ttgttatatt gatatatata tatttgtcat tatttttatc      5820
     attgttatta ttagagttat agttctttcg ttagctttgt tcattgtaat tatattagat      5880
     tattgttgtt taaaattttg ttttaagaca aaggaagaga                            5920
//
ID   Gypsy-41_SiOr-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-190
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 409-409 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 190 BP; 64 A; 20 C; 47 G; 58 T; 1 other;
     tgtaatgtat tgatttgtaa aaagaggatg attcagattg ttgttgttct gataaggtga        60
     ggcgagcggg gatcgagtca gtagtttacg ggctgtagcg tagagcgtta cstgattgta       120
     aaagtgtata taagaatata cgatattaca aacaatagaa gtgttttatt aacaaatagc       180
     aatcaccaca                                                              190
//
ID   Gypsy-41_SpEx-I repbase;    DNA;    INV; 4538 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4538
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4109-4109 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           73..4098
FT                 /product="Gypsy-41_SpEx-I_1p"
FT                 /translation="MREVMDLVSTITKNAATSAVTAALSASSTPTITIRER
FT                 GNFYLPPFDPDVRSHDIRDWCANVDENIAAFNIPQQEARMKAILQLKGRAK
FT                 TWADTWSLTSTTWQQVKEDLIRTFGKEFRYADDVQKWRNYTSDQANSYAEY
FT                 ATTGWTLFKRVRPEAEDSEIIDALITGIYPEFIRSELLRNTPGSLPSLVSV
FT                 LKTFRKRKIESNSESSNKQYKKPRVLENSTKMPICCFNCNKPGHIARDCKA
FT                 KTSLTQSVEPSISNTQKPSSTTKSVECHYCHRKGHIEKNCFKKQNDERQKL
FT                 TNNQSINFCTSRDRSLINIKIGGKLYKCLFDTGADCSLIRNKLATSIPGKR
FT                 NSVNVTFMGIGGCPVISTQSIITPVEIDDVLIEIEFYVVGDAQTQFDIMIG
FT                 FDIVKIPGLSVTISKEGISVNRNLIINQCSNTAINXTSFDINKDIQNXELL
FT                 KKLRDILNSFKSSFTIGNRVSEIKTGELTIKLKNPDKIVQRRPYRLSPLER
FT                 ENVKRIINDLKENNIIRDSSSPFSSPILLVKKKDGSDRLCVDYRELNANTI
FT                 RDNYPLPLIADQIDKLGKARFFTCLDMAAGFHGIPIAKDSIEKTAFVTPDG
FT                 QFEYLRMPFGLCNAPSVYQRAINKALGDYKDKIALIYIDDVMIMSSTIEEG
FT                 IENLQLVLKRLTDAGFSLNISKCSFLKTSVEYLGNVIENGTVKPSPRKISA
FT                 LSKSKVPQNIKELRQFNGLAGYFRKFVPNFSKIMAPLYELTKSNVPWKWSE
FT                 SQDRARNEIIDRLTSSPVLKIFDPELPCELHTDASSLGYGAVLIQRHNSNP
FT                 HVIGYFSMRTTSVECKYHSYELETLAVVKSIKHFRHFLHGRPFKVITDCNS
FT                 LKASKHKKELSPRVHRWWAFLQNFQFEVEYRKGNRLAHADFFSRNPLTQSD
FT                 APKRNYPECEPLRFNINSSTIDHNWLLIEQKRDPVLKDIVDNLKSDSIPQT
FT                 IADTYVIMQDKLLRRKIQIDNKTRKLIIVPRNYRWNLISHYHDALQHFSWE
FT                 KVLDKIRDQYWFPEMSKLVRKFVENCVSCRIRKGNSGAKQISLHPIDKIAV
FT                 PFHTVHADITGCMNGKRNQAEYAFVFIDSFTKYVHLIYTNDRTTPTAIKCF
FT                 REVITIFGTPTRLISDQDKSMTSTEFKNFCNQYGIEHHVVAKGASRANGQV
FT                 ERVMKIIKDNMSVIELKKPWHNAIQDLQLAINCTVSKSTGKSPMELLFGKK
FT                 CSPPLIKLLQVDDDEPTEDLASIRSLCKKRMDEQALKDKLRFDKGKAKINP
FT                 FKVGDFVLMRRHERHTTKLGSKFEGPMEILEVLPNDRYKLKHVNLRGCSEK
FT                 IASHDFLRPAPEAQADPFLDNDSAVWASDN"
XX
SQ   Sequence 4538 BP; 1457 A; 920 C; 901 G; 1256 T; 4 other;
     gcagcggtgg gatcacaatc gcctctttta tgcacgtcag gctctcaaca aagaccagag        60
     ccaaccttca caatgcgaga ggttatggat ttggtatcka caatcaccaa aaatgcggcg       120
     acaagtgctg tgactgctgc gctatctgcc agttccacac ccactataac aatacgggaa       180
     agaggcaatt tttatctacc accatttgat ccggatgtgc gatctcatga cattcgagac       240
     tggtgcgcaa atgttgatga aaacattgcg gcattcaaca tacctcagca agaagccaga       300
     atgaaagcta ttcttcagtt aaaaggccgg gctaagacct gggctgatac atggtccctt       360
     acatcaacaa catggcaaca agttaaagag gacctcattc gcacttttgg gaaggagttt       420
     cgctatgccg acgatgtaca gaaatggcgg aactacacat ctgatcaagc caacagctac       480
     gctgagtacg ctacgacagg gtggactctg tttaaacgcg tgagaccaga ggcagaggat       540
     tcagagatca tcgacgcctt gataacaggt atttatcctg aatttattag gtckgaattg       600
     ttaagaaaca cgccaggatc attgcccagt ttggtatctg ttcttaaaac tttccgcaaa       660
     cgtaaaattg agtcaaattc tgagtctagt aataagcagt ataaaaaacc acgtgtttta       720
     gaaaattcta ctaagatgcc aatttgttgt ttcaactgca acaagcccgg tcacattgcg       780
     cgagattgta aggcaaaaac ttcccttact caatctgtag agcccagtat ttctaatact       840
     caaaaacctt caagtaccac aaaatctgta gagtgtcact actgtcatag gaaaggtcat       900
     atcgaaaaga attgttttaa gaaacaaaat gatgaacgcc aaaaattaac taataatcaa       960
     tccataaatt tttgtacttc tcgagaccgt agtttaatca atatcaaaat aggtggtaaa      1020
     ctctataaat gcctatttga taccggtgca gactgctctt taatcagaaa taaactcgct      1080
     acatctattc cgggaaaaag aaatagtgtg aatgtcacat ttatgggtat aggcggttgt      1140
     ccggtaatct caacacaaag cattattact ccagtggaaa tcgatgacgt actaatcgag      1200
     atagaatttt atgtagtggg tgacgcacaa acccagttcg atatcatgat tggctttgat      1260
     attgttaaaa tcccaggtct cagcgtaaca attagcaagg aaggaatttc tgtaaatcgt      1320
     aatttgataa taaatcaatg cagtaataca gctattaacc mtacgtcttt tgatattaac      1380
     aaggacatcc agaatckaga actacttaaa aagttacgag acattctaaa tagtttcaaa      1440
     tccagtttca cgataggtaa tagggtttcg gaaattaaaa ccggtgaact aactataaaa      1500
     ctcaaaaatc ctgataaaat agttcaacgt cggccctatc gactgtcacc cttagaacgt      1560
     gaaaatgtta aacggatcat aaacgactta aaggaaaaca atattattcg tgatagttct      1620
     tctcctttta gtagccctat actactggta aagaaaaagg atggctctga ccgcctctgc      1680
     gtcgattata gggagctaaa tgcaaataca atcagagaca actatccctt accacttatt      1740
     gccgatcaaa tcgacaaatt aggcaaggcg cggttcttta catgcttaga catggctgca      1800
     ggttttcacg gaatcccaat tgcgaaggat tcaatagaaa aaacagcatt tgtgacaccg      1860
     gatggccaat tcgaatatct gcgcatgcca tttggcctat gcaatgcgcc ttcagtttat      1920
     caacgcgcga taaataaggc cttaggggat tacaaggaca agatagccct tatatatatt      1980
     gatgacgtca tgattatgtc atcaacaatt gaagagggca ttgaaaattt acaacttgtt      2040
     ttaaagagat tgacagatgc tggattttct ttgaatattt cgaaatgctc atttttaaaa      2100
     accagtgtag aatatttggg aaatgttata gagaacggaa cggtaaaacc tagtccgcga      2160
     aaaatatctg ccttgtctaa atcaaaagta ccgcaaaata ttaaagaact tcgacagttt      2220
     aacggtctag caggctattt tagaaagttc gtaccaaatt tttcgaagat tatggcgcca      2280
     ctttacgagc ttactaagag caacgtacca tggaaatggt cagagagtca ggatagagct      2340
     agaaacgaaa taattgatcg attaacgtca tctcctgtac ttaaaatctt tgatcccgaa      2400
     ttaccctgcg aacttcacac agatgcgagt tctcttggct acggcgccgt ccttattcaa      2460
     agacataatt cgaaccccca tgttataggt tattttagca tgcgaacaac atctgttgaa      2520
     tgtaaatatc actcttatga actagaaact cttgctgtcg taaagtctat taaacatttt      2580
     cgccactttt tacatggccg accttttaaa gtaatcactg actgtaactc tcttaaagct      2640
     tcaaaacaca agaaagagct ttcccctaga gtgcatcgtt ggtgggcctt tttacaaaac      2700
     tttcaattcg aagtagagta tcggaaaggc aacagattag cccatgccga tttctttagt      2760
     cgcaacccac taacacagtc cgatgctccg aaacgtaact accccgaatg tgaacccttg      2820
     cgtttcaata ttaattcctc aacaattgat cataactggc tccttattga acaaaaacgc      2880
     gacccagtgc taaaagacat tgtcgataac ttaaaatccg attctattcc tcagacaata      2940
     gcagacacat atgttattat gcaagataaa cttttaagac gcaaaatcca aattgacaat      3000
     aaaaccagaa aacttattat tgttccccgt aattaccgct ggaatcttat cagtcactat      3060
     catgacgcat tacaacattt ttcgtgggaa aaagtgttgg acaaaataag ggaccagtac      3120
     tggttccctg aaatgtcaaa attagttaga aaatttgtag agaactgcgt cagttgtaga      3180
     atccgtaagg gaaattctgg tgctaaacaa atatcattac acccgattga taaaattgcc      3240
     gtaccttttc atactgtgca cgcggatata accggttgca tgaatggcaa gcgaaaccaa      3300
     gctgagtatg ccttcgtttt cattgatagt tttacgaaat atgtccattt aatttatact      3360
     aatgaccgta caacaccaac cgccattaaa tgtttccgtg aagtaataac tattttcgga      3420
     acgcctaccc ggctcatttc agaccaagac aaaagtatga cctctacaga atttaaaaac      3480
     ttttgtaacc aatatggtat cgaacatcat gttgtagcta agggcgccag tagggccaat      3540
     ggacaggtag aacgtgtcat gaaaattatt aaggataata tgtccgttat tgaacttaag      3600
     aaaccatggc ataacgcaat acaagatttg caactggcca taaactgcac tgtatcaaaa      3660
     agcactggta aaagtcctat ggaactctta tttggcaaaa aatgttcccc tccactcata      3720
     aaactattac aagttgacga tgacgaacct acagaggacc tggcgtccat tcgttcactc      3780
     tgtaagaaaa ggatggacga gcaagcatta aaagacaaat tgagatttga taaaggcaaa      3840
     gctaaaatta acccattcaa agttggggac tttgttctca tgcgtcgcca tgagcggcat      3900
     accactaaac tcggttcaaa gtttgaaggt ccaatggaaa tattagaggt actacctaat      3960
     gatcgatata agttaaaaca cgttaatctt cgcggatgta gtgaaaagat tgctagccat      4020
     gactttttac gacctgcgcc ggaagcacaa gctgaccctt tcctggacaa tgattctgcc      4080
     gtatgggcta gtgataatta gaaataattc tgagtattgt ttatattatg tagaagtata      4140
     gcgtaaggtt atctgtttat ttgtaaagaa taatttgttt ttccaaccta tccacacatc      4200
     cttccttaaa cgctggctgg ccaccacgcg tttccttaat cccggtcttg gtggctagat      4260
     ccccgtggtg ggtgatgcct tggtggctag atccccgtgg tgggtgatgc cttggtggct      4320
     agatccccgt ggtgggtgat gccttggtgg ctagatcccc gtagagggtg atgccttcgt      4380
     ggataaatcc ccgtggaggg taatgccttg gtggctacat cccttggtgg gtaatgcctt      4440
     ggaagtccca tgatgattga tatctaatgt atttatgatc attgttgtaa ttgatttagt      4500
     gatacagcgc gagagcgcgc tggatcagaa tggccgta                              4538
//
ID   Gypsy-41_SpEx-LTR repbase;    DNA;    INV; 469 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-469
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4170-4170 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 469 BP; 146 A; 63 C; 78 G; 177 T; 5 other;
     tgggcgcaga gwagcattta atcaaaatgt atttgagaat gttataactt taaggtagaa        60
     ttcactattt ttatckgtta atttttaatg ttaaatagtt atccgaacat gaggtcatgt       120
     taattattta maattccatt aatwattatt taattaattg ctatttattt aatttttsat       180
     ttttctataa aataattaaa tatttgctat ctcatgatcg gaagtgacgt cactcagttg       240
     tcactcagtt gcgatataaa aaggcggtga ttgttatagc agcattcatt cgttggcgag       300
     tcgccggtga gtaaacattg ttttgtaatt gtgtgtgcat ctgtgaaata ttgtaatcat       360
     ttataataaa aagttattgt gatcaatttt tgtggattat tattattatt tcacacacgc       420
     cgttctaaaa atggcctctc aacacccaag cggagacaat acgccgaca                   469
//
ID   Gypsy-41_TrNi-I repbase;    DNA;    INV; 6035 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-6035
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 243-243 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           955..5514
FT                 /product="Gypsy-41_TrNi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MNSDEAMTPEGSPTRKEERHRKLKPSSSGAAAKSKKA
FT                 KKRSKRRRKQSSSSSSSSSESFRSSRSSNKRRSKEKVGWSTKEVLDMFNTF
FT                 QKHKGKDIFNNNLVNNVIPEFDPSSKTQNIDCWLRKVNECSVIYEWNERQT
FT                 IHFALQKLSGQAKKWYGALPSVVFSWSEWQDKLLKAFPDEQNYGRLLEEML
FT                 ARTTRGSESLREYFYDKLTLLNRCEIRGKKAVDCIIHGILDKSIRNSAQTL
FT                 TCREPEDLLNFLSSQRLVLENNIFNKKRSDIVRPGNTATTSTESSVTCFNC
FT                 RSKGHPYFRCPKPLIKCLKCQRVGHNNDNCKLEPLILRNEPKQADNQDRKI
FT                 LTISTFNNNSDKFYKNVTVNDKSLIAFIDFGSECSLIRESDAQSLNLNKSL
FT                 TELPVIKGFGNSKVFPIYKSNIDLKLDEVEVNVEVLVVSNQFLQSALLIGQ
FT                 NVTELPSVTVFKNSHQLIFYQSPDTETMIQPVKCLKLNIQNDTNIGLSGLV
FT                 EVTTSEAGYCGDIYIEGYCNCEPNKEHYLHQGVFRVVDGKCCLPITNLSGQ
FT                 NLTLPKKRPIAKGTCLVERSTTYTNRVTKDSTEYEPLLITDIKVGPQIDKE
FT                 TLSXLHSLLLNYRDCFAFKLGEIGCANSIEMKIDLLDDKPVVYRPYRLSFS
FT                 ERGQVREIVDDLLQNDIIQESDSNYASPIILVRKKTGEQRLCVDYRALNNK
FT                 TRKDCFPLPIIDDQLTNLSGNRFFTSLDLASGYYQVPMAKESRPLTAFVTP
FT                 DGHYEFKRMPFGLANAPAVFQRFMNAMLGSKRHESALAYLDDILVPSVTLE
FT                 EGFERLEGVLKLLRQNGLTLKLSKCRFFDNSLDYLGYEISAEGIRPNENKI
FT                 LAVKEFPVPQNVHEIRQFLGLAGYFRKFVRSFGEIARPLTNLLKKGNAFKW
FT                 TDDESNSFNTLKDKLTDRPILALYNINFETELHTDASSLGVGGILMQWQPE
FT                 PRALKPIAYFSRQTTPEERHLHSYELETLAIVCSLKKFRVYLLGIEFKIVT
FT                 DCNALRTTLTKRDLIPRIARWWLLISEFNFSIEYRPGIRMAHVDALSRNTK
FT                 LTPEDIDSSTVTVYSIETDSWLLTLQITDPDISRIYKILKPESDEEAKDIR
FT                 KKYVVKNSRVYRRVDDRLCLVIPRNARWQICKSNHDDAGHLGVSKTTERIQ
FT                 SVFWFPKLRRFVKKYVKSCIKCAYNKDNMMRHKSGQLYPIQKVSIPFHTIH
FT                 IDHLGPFVKSKNGNAYILTLVDGFTKYLFVRAVKDTKTKTTVKVLLNVFYD
FT                 FGLPSRIISDRGTSFTSAAFKSFCDTHGIKHVLNAVACPRANGQAERYNQT
FT                 ILSSLAKYSDGEDERNWDMSLGKIQWGINNSINSTTQKTATEALFGTRLRD
FT                 GLSNLLDVNNELNPNLTEVRQEVLANIESSQAKQKQKYDQNRIPAPTYKAG
FT                 DLIKITRTNFNNKGNSTKLMSKFIGPYKIAEALGNDRYKVVDIPGFSKRKN
FT                 KFDSVVAVDRIRPWISINMAEKNDDVDPVANSSSSSDSESNNSDNELSQSQ
FT                 PEPK"
XX
SQ   Sequence 6035 BP; 2017 A; 986 C; 1207 G; 1821 T; 4 other;
     attcagaagc ggaaaaagga ccccacaaga aaaaaaagca agggtatgtt ataaacatat        60
     aacttttatt ctggaaaata tgcaagtcta agtctagcct aaatgactaa ggatattatg       120
     tatcttagta cgtctggtac acaaatataa cgcagacaaa gttttagctc ttagaaatgt       180
     taaaaaaaaa agaaaggcgc caaatggtta atattgtgtg caactttccg taacaatttg       240
     gcaaatgttt aacatgtgat tttatacgtt ttttttattt ttatttctct tttatgagga       300
     ttaacgtgtg cctactatag aaagctaagt gcgctttatc ttatataagt ttttaaaact       360
     attgagccat gtgtgcttga tggtagaggc tatgtgtgcc tacaatataa agccaagtgc       420
     gctttatcta atagaaatta tgtatgctta ttgagccatg tgtgcttgct ggtagaggct       480
     atgtgtgcct acaatataaa gccaagtgcg ctttatttag tataaatttt gtatacctat       540
     tgagccatgt gtgcttgatg gtagagatta gtgtacctac aataggaagc caagtgtgct       600
     ttaactagta gatgttattt atttttattg agccatgtgt gcttgatgtt agaggctatg       660
     tgggcctatt gaatcatgac tgtttagaaa tgtgagagta aaggttatgt gtacctgcaa       720
     tataccgatt gccggtttgc gcccattaaa gcgtatcaac gttaaaacta gattattacc       780
     ttttattttt tttaaatttt catacaagta cgaacgagtg gtgcaatgaa ttgatttcta       840
     tacaaatata tattgagctg tatagttagt gaacctatag aatatgagtt aattgataca       900
     ggtatgtatc ttgatagact gatgtgatta caatgatatt taatcctttg aggtatgaat       960
     tccgacgaag cgatgactcc cgaaggctcg cctactcgga aggaagagcg ccatagaaaa      1020
     cttaaaccgt cttcctccgg agcagcagct aagtctaaga aagccaaaaa gcgatcaaag      1080
     aggaggcgta agcagtcgtc cagctcctcc tcgtccagca gtgagtcatt ccgcagttca      1140
     cggagttcga ataaaaggcg atccaaggag aaagtcggtt ggtctactaa agaagtactt      1200
     gatatgttta atacctttca aaaacataaa ggtaaagata tttttaataa caatctagtg      1260
     aacaatgtaa taccggaatt tgatccgtcg agtaaaactc agaatattga ctgctggctt      1320
     agaaaagtaa acgaatgctc tgttatttat gaatggaacg agaggcagac catacatttt      1380
     gctctacaaa aactttctgg tcaagcaaag aaatggtatg gagctcttcc tagtgttgtt      1440
     ttcagttggt cagagtggca agacaaactc ctaaaagcat tcccagatga gcaaaattat      1500
     ggtcggcttc tcgaggaaat gttagctcga accacccgcg gtagcgaaag tctgcgagaa      1560
     tacttttacg ataagttaac attgttaaac agatgtgaaa taagaggcaa aaaggctgtc      1620
     gattgtatta tccacgggat cctggataaa tcaattagaa acagtgcaca gacactgact      1680
     tgtcgcgaac cggaagactt attgaatttt ctaagctctc aacgtctcgt attagaaaat      1740
     aatatcttca ataagaaacg tagtgatata gttcgaccgg gtaacacagc aactacctca      1800
     actgaaagtt cagtaacttg ttttaattgc cgctcaaaag ggcaccctta ctttcgatgc      1860
     cctaaacccc ttattaaatg tttgaaatgc cagcgggtgg gccataataa tgataattgt      1920
     aaattagagc cattgatctt aagaaatgaa ccaaaacagg cagacaacca ggatagaaaa      1980
     attttgacta tatctacgtt caataacaat agtgataaat tttacaaaaa tgttacggta      2040
     aatgataaat ctttaattgc ttttattgat ttcggcagtg aatgtagttt aattagagag      2100
     tctgatgctc aaagtctgaa cttgaacaaa agtttaactg agttgccagt aatcaaagga      2160
     ttcggcaact ctaaagtttt tcctatatat aagagcaata ttgatctgaa attagatgaa      2220
     gttgaggtta atgtagaggt attagtggtt agcaatcagt ttcttcagtc agctttactt      2280
     ataggtcaaa atgttaccga actccctagc gtgacagtat ttaagaacag ccatcagtta      2340
     attttttatc agagccccga taccgaaacc atgatacaac cggtgaagtg tctaaagtta      2400
     aacattcaaa acgataccaa tattggatta tcgggattag ttgaagttac cacatctgaa      2460
     gctggctact gtggagatat ctacattgaa ggttattgca attgtgagcc taacaaagag      2520
     cattatttgc accagggagt ttttagagta gtggatggaa agtgctgttt gcctataact      2580
     aatttatctg gtcaaaacct tacattacct aagaaacgcc ctattgcaaa agggacttgc      2640
     ttggttgaga gaagtacaac ttacacaaat agagtaacga aagatagtac ggaatatgaa      2700
     cccttattaa taactgacat taaagttggt ccccaaattg acaaagaaac attaagtagm      2760
     cttcattcac ttttacttaa ttatcgtgat tgctttgctt tcaaactagg agaaattggt      2820
     tgtgccaatt ccattgaaat gaaaatagac ttgttagatg ataaacctgt agtttaccga      2880
     ccgtatagat tatcattttc agaaagaggt caagttaggg aaatagtaga tgatttattg      2940
     caaaacgata ttatccaaga gtccgattca aattatgcta gtcctattat attggtgagg      3000
     aaaaagacag gcgagcagcg attatgtgtc gattacaggg ctttaaataa taaaactagg      3060
     aaagattgtt tccctttgcc aataatagat gatcagctga caaaccttag tggcaataga      3120
     ttctttacat ctctagattt agcttccggg tattaccagg tgccaatggc gaaagagagt      3180
     cgtccgctaa ctgctttcgt aacgccggat gggcattatg aatttaaaag gatgcctttc      3240
     ggtctcgcga atgctccagc tgtatttcag cgattcatga atgcaatgct aggtagtaaa      3300
     cgacatgaat cagctttggc ttatttggac gacattcttg tgccatcggt taccttagag      3360
     gagggatttg agagattgga gggtgtttta aagttgttgc gtcagaatgg acttacttta      3420
     aaattatcca aatgtcgttt cttcgataat tcgcttgact atttaggtta tgagatttct      3480
     gctgaaggca tacgccctaa tgaaaataag attttggctg tgaaggagtt tcctgttccc      3540
     cagaacgtac atgaaatccg tcagttcttg ggtctagcag gatattttag aaaatttgtt      3600
     agaagtttcg gcgaaatagc aagacctcta acaaatttac ttaaaaaagg aaatgctttt      3660
     aaatggaccg atgacgaatc caattcgttt aacaccctaa aagacaagtt aactgaccga      3720
     ccaattttag cactatacaa cattaatttt gaaactgagt tgcatacgga tgcaagttct      3780
     ttaggcgtgg gcgggatatt gatgcaatgg cagccggaac cgcgcgctct caaaccaata      3840
     gcatatttta gccggcaaac cacccctgag gaacggcact tgcactctta tgaactcgag      3900
     actcttgcaa ttgtttgctc attaaagaaa tttagggtat atttattggg aatagagttc      3960
     aaaattgtga ctgactgtaa cgccctacga actacactga ctaaacgcga tttaataccc      4020
     cgaatagcta gatggtggct tttaataagc gaattcaatt ttagtataga gtaccgtcca      4080
     ggcatccgta tggctcatgt agatgcactg agccgtaaca ccaaattaac acccgaagat      4140
     atcgatagtt ctaccgtcac agtctatagc attgaaactg atagctggct cttaacttta      4200
     caaataacag atcccgatat atcgcgaata tataaaatcc ttaaacctga gtcagatgaa      4260
     gaagctaaag atattagaaa aaaatatgta gttaaaaaca gtagggtata caggagggtt      4320
     gatgataggc tttgtttagt aattcctcgc aatgctcgat ggcaaatatg taaatcgaat      4380
     cacgatgacg ctggtcattt aggtgtatcc aaaacaaccg agagaattca gtctgttttc      4440
     tggtttccta agttacgtag atttgttaaa aagtacgtaa aatcctgtat taagtgtgct      4500
     tataataagg ataatatgat gcgacataag agtggtcagt tgtatccgat acagaaagta      4560
     agcattccat tccacaccat tcacattgac cacttgggtc catttgtcaa aagcaagaac      4620
     ggcaatgctt acattctcac cctagtggat ggatttacca agtatttatt tgtaagagct      4680
     gttaaggata ctaaaactaa aacaacggtt aaagtattat tgaatgtttt ttatgacttc      4740
     gggttaccat cccgaataat atcggatcga ggtacctctt ttacttcagc agcctttaaa      4800
     tccttttgtg atactcatgg tattaaacat gtgttaaatg ctgtagcgtg tcccagagcc      4860
     aacggccaag ccgaaagata caaccaaacg atcttaagtt cacttgcaaa atattctgac      4920
     ggtgaggacg aacggaactg ggacatgtct ctgggaaaaa ttcagtgggg aattaataat      4980
     tccataaatt ccaccactca gaaaacggct actgaggcat tgtttggaac cagattgaga      5040
     gacggcttaa gtaatttgct agatgttaat aatgagctta atccaaatct tacagaagta      5100
     agacaagaag ttctcgcaaa tattgaatct agccaggcta aacaaaaaca aaaatacgat      5160
     caaaatagaa ttcctgcccc aacttataag gcaggggatt taattaaaat aacaagaact      5220
     aattttaata ataaaggtaa tagtactaag ctgatgtcaa aatttatagg cccctacaaa      5280
     atagcggaag ctttgggcaa tgataggtat aaagttgttg atatacccgg tttcagtaaa      5340
     cgtaagaata aattcgatag tgtggtagca gtagacagga ttcgaccgtg gatcagcata      5400
     aatatggccg aaaaaaatga tgatgtagat ccagtggcta atagcagtag ttcgtccgat      5460
     agcgaaagca ataatagtga caatgaactg tcacaaagtc aacctgagcc caaataatgc      5520
     ccgaatgtaa tgaaattatt taaattcaat attttatatt tgtatatgat tggtctacaa      5580
     gtgctttcat gaaatttgtt ttaatgtttg aaaaaaaaaa tactctacaa atataatgaa      5640
     catatkgtta gttataagat aagtttacag ttggtttaaa tgaaattttg agagtatgtt      5700
     aatttgattt tataaaaata gtctatacga atatacatat aaatacctaa tttattaatt      5760
     cggattaaaa aaaaatatat gtacaggatt agtttataat tgtttagatg aaatgaaatt      5820
     caatgtttga ttwttttttt taaattaccc tacgaatgta atgcatgatt agccgatata      5880
     ccgacatgta gatatattga cgtgtgttta cwgtcagatt cagactttac agttgattga      5940
     aatgaaattt cgtgagtaaa attattttta tttttttaag tttatgtttg attatatacg      6000
     tgcgtcagga gatcgcacgt tgtcggacgg ccgaa                                 6035
//
ID   Gypsy-41_TrNi-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-306
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 197-197 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 306 BP; 108 A; 25 C; 59 G; 114 T; 0 other;
     tgtaatgaat ttataattat ttaacatgtt tttaataaat ttgttatgtt aaattatatt        60
     tatttatatt agtttgttaa aagaggcaga atgtcattat ttcgttagtc tatgatgttc       120
     ggtcgagaaa aatgtgactg ggcgggaatt ttgaatagag aagaagaagg gcattctgtt       180
     cggacatctc gtggaaggag ataaaaagtt gtaatttatg aatgtgaata atataactgt       240
     tatttcaagt aagctgtttt aataatttcc cgaatagtaa cacaaatatt gagagaattc       300
     attaca                                                                  306
//
ID   Gypsy-41_TrVa-I repbase;    DNA;    INV; 5468 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5468
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 286-286 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           435..1643
FT                 /product="Gypsy-41_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MAEAFLQFAESLLKTPLERRAREAPAKSVQLEELWFA
FT                 VPSADKSEALRKRYGRCKIFLSKSLTDDSENSDNDDLGIFNEPQVNTENSL
FT                 PGKSNDSSKCKMEFSLKTVNSVVPDFDGNSSQLVDFLDCAKLYNDMLSDAG
FT                 KVIFLNFLLKVKLKKRAKVAVTSEITTFDDFDVFMRARFRPRVTLATLQNE
FT                 LTSLRQENSVTDFASKIEELVSKMTQLQVIDHGDNNLKIIKSLNDVVALNA
FT                 LKMGASAEIKRVLLAAQVKSFADGVSVALEAESGIRSSFSSGADSSKQVSV
FT                 VHRGRGGRGWNNRGSNRGYNRDNYRGRQNNYNSNKGYQQQSSSSQGQGTQD
FT                 NRRGGKFQQRGPRFDDSQRGAFRGKNQSGNGKAPPTDGKQVQVSLAAIRSA
FT                 DATPSDWRA"
FT   CDS           1508..5311
FT                 /product="Gypsy-41_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RFPARRFPRQKSVGKRESAANGRKTGAGIAGGDSISG
FT                 CYAFGLESVTNFVRLLTNASDQPLNFLVDCGADVSILKKCVVNRKNLDLVN
FT                 NYFDITGVGEGKVRTLGELSLNFRFNAECSLMHPVHLVDENFPIRTDGILG
FT                 RDFLNKFKCVLDYESWTLRFNDEGSLVEVPLHSDLSKFRTDSYLVLPPRTE
FT                 VVQAIDVNVAEDSVVRGRRLHRGVFLLHSVVPAKGPQHVKIVNTSETEVVL
FT                 RNFKVSHEPLANFYVLKTSTPYSIEERKKLVRKIFTEKMTDLPSPDKDEII
FT                 ELCVEYHDVFHLPNDLLTANNFYEQDIVLSDPTPVYRRNYRSPHSDAAHVR
FT                 EEVEKLINSDLVEPAVSAYNSPIFLVPKAGKPDKFRLVVDLRGLNERVVSD
FT                 KFPLPHIEQILQSLGKARYLSSCDVASAFHQIALKKEARHLTAFSYPGLGQ
FT                 FQFRRLPFGLKIAPNSFCRMMGIALSGLEDRCCSYLDDILIWGSSRAHHKF
FT                 SVKLVFDRMRKYNLKLGPEKCNFLRKELVYLGHRVTTEGIFPDSEKLKAVL
FT                 DYPEPVDKAAAHRFVAFAQYYSKFIPNFAKYAAPLNQLLRKNVPFEWTQER
FT                 KDCFNHLKQCLATPPVLQYPDFEKHQFIVTADASQFALGAVLSQGVLGEDQ
FT                 PLAYASRGLNKHEVKKSTPEKELLAIHWAIQHFRPILYGYRFTVVTDHRAW
FT                 VSLFSQKDPSSRLTRMRLDLEQYDFEVIFRPGKYQTNADALSRIKIDSEYL
FT                 KGISSDKEIDVVTRSMSRAQRDIESADKVNTAAPLSESSVSKFDHLRIWDA
FT                 TSVSAVHSLETLLFKIHFSDSKAGRKIQLCNDKHCLPPNSVLSGFVLNKVG
FT                 KNYQVEIQCRNNSVLDLRLILETLTNRFGHLILKLSRADALFDYVSVDSFK
FT                 DCVNKFSFPLQIVLFSPSEEIIDPIRQQSIIESFHNAKVGHFGTKKTLARI
FT                 KQFYHWKHMRKMVDSFVQQCHACKMNKVTKHNKEKLQITTTPTTSFQVVEL
FT                 DLVGPLPITENSFRYALTLQCNLTKYIDAVPLTDKSANTVARAIVEQFFCR
FT                 YGLAKVIRTDLGSEFINDVLNHVCILLSLEHNTSTAFHHETLGSLERNHRV
FT                 LNEFLRIHSTNMDSTWDNLLPFYCLAYNSTPLVVNNCTLSPYELVYGKLPQ
FT                 LPNVAIPPSISYSDLYSYNADLRNRLVHAHRMMQHYLQQFKMKQTTNSSSY
FT                 TPRKFQPGDLVKLRLEQRNKLDPVYTGPHAVLESIGVNTKIMKNGKPYLVH
FT                 NNRLLSY"
XX
SQ   Sequence 5468 BP; 1591 A; 1020 C; 1140 G; 1717 T; 0 other;
     tggcgaccgt gacaggacac cgagttctta tcattctaaa tgagcggtac ttacaaattt        60
     gaagacgcgt ggtcatttaa aaacccttcg aaaatgggcg gctctaattc tagggaagaa       120
     aaaagtgttt cggaatcggt aatcgtgtcg ggtcaagcca acgttacttt ttccgatcat       180
     gatctcgcgc agtggtggac catcggtggc ataattttta tttttgttgt ttttgtgtta       240
     attttcggga ttcgccgatt tttccgcagc attcgcgatt tccggcagca acagaatgag       300
     ttgcgcgcgg ctgtacttga attgcgggct aatcgcacca attagttgtt gaacctcgat       360
     tgaacttcga tttttggtta agagtgtttt ttcccccttt gttttgtgtg tgttatgttg       420
     taaaattaga ttttatggcg gaggcttttc tccaatttgc ggaaagttta cttaagaccc       480
     ctttggagcg tcgtgcacgc gaagcacccg caaaaagtgt tcagcttgaa gaactttggt       540
     tcgcagtacc gtcggcggac aaatcggagg cacttcggaa gcgttacggg cgctgtaaaa       600
     tttttctttc caaatcgtta accgatgatt cggaaaacag tgataatgat gatttgggga       660
     tttttaacga accgcaagtg aacaccgaaa attctttacc gggaaagtcg aacgattcct       720
     ccaagtgcaa aatggagttc agtcttaaaa cagtaaattc ggtggtgccg gatttcgatg       780
     gtaattcttc gcagttggtt gattttcttg attgtgcaaa actgtataat gacatgcttt       840
     ccgatgcggg taaagtgata tttttaaatt ttcttttgaa agtaaaattg aaaaagcgtg       900
     cgaaagtagc ggtaacgtct gaaattacga ctttcgatga tttcgatgtt tttatgcgag       960
     cgcgtttcag accgcgtgta actttagcta ctttgcaaaa tgagttgacc tcgttgcgtc      1020
     aagaaaattc agtgacggac ttcgcttcaa agatcgagga acttgtttcg aaaatgactc      1080
     agttacaagt tatcgatcac ggggacaata atttgaaaat tattaagagt ttaaatgacg      1140
     ttgtggcgtt aaatgctctg aaaatgggtg ccagtgccga aatcaagcga gttttgttag      1200
     cagcgcaagt caaatcgttt gcggacggag tttctgtggc tttagaggcc gaaagtggga      1260
     ttcgttcgtc cttttcttct ggggctgatt cgagcaagca agtgtctgtt gtgcatcgtg      1320
     gacgtggagg tcgcggctgg aacaaccgtg gttcaaatcg cggatataat cgagacaatt      1380
     atcgcggaag gcaaaataat tacaactcca ataaaggata tcagcagcag tcttcctcca      1440
     gtcagggcca gggcacacag gataaccgta ggggtggaaa gtttcaacaa cgcggacccc      1500
     gttttgacga ttcccagcga ggcgctttcc gaggcaaaaa tcagtcggga aacgggaaag      1560
     cgccgccaac ggacggaaaa caggtgcagg tatcgctggc ggcgattcga tcagcggatg      1620
     ctacgccttc ggactggaga gcgtaacgaa ctttgtacgt cttttaacca atgcttcgga      1680
     tcaaccgtta aactttttgg ttgattgtgg tgcggacgtg agtattttaa aaaaatgtgt      1740
     tgttaataga aagaatttag atttagttaa taattatttt gatatcaccg gtgtaggtga      1800
     aggtaaagtg cgcactttag gagagttaag tttgaatttt aggtttaatg cggaatgttc      1860
     tttaatgcat ccggttcatt tagtagacga aaattttccc ataagaacag acggaattct      1920
     cggaagagat tttcttaata aatttaagtg tgttttagat tatgaatcat ggactttacg      1980
     ttttaatgat gagggttctt tagtggaagt ccctttacac tcagatttaa gtaaatttag      2040
     gacagatagt tatttagttc ttccgcctcg cacggaagtc gttcaagcca ttgacgttaa      2100
     tgtggcagaa gacagtgttg tgcgtggtag acgcttgcac cgtggagttt tcttgcttca      2160
     ttcagtcgtt cccgcaaagg gaccacaaca tgtaaaaatt gtaaatacct cagagaccga      2220
     agtagtctta cgtaatttta aggtttctca tgagccattg gcaaactttt atgtgttaaa      2280
     aacttctact ccgtattcta ttgaagaacg gaaaaaatta gttaggaaaa tttttaccga      2340
     aaaaatgact gatcttccct ctccagataa agacgaaatt atcgaattat gtgtcgaata      2400
     tcacgatgtt tttcatctgc caaacgatct attaacagcg aataattttt acgagcagga      2460
     catagtttta agtgacccta ctccagttta taggagaaat tacaggagtc ctcattctga      2520
     tgcagcgcac gtgcgtgaag aagtagagaa gttgataaat tcagatttag ttgagccagc      2580
     tgtgagcgct tataattccc caatttttct ggttcctaaa gccggaaaac ccgataagtt      2640
     taggcttgtt gtagacctga gaggtctcaa tgaacgggtt gtttctgaca agtttccgtt      2700
     gcctcatata gagcaaattc ttcagagctt aggaaaagcg agatatctaa gttcctgcga      2760
     tgttgccagt gcgtttcatc aaattgcctt gaaaaaagag gctaggcatt taacagcatt      2820
     ttcttatcca gggcttggtc aatttcaatt tcgtcgtctg ccctttgggt tgaaaattgc      2880
     tccaaatagt ttttgtagaa tgatgggtat tgctttatct ggattggagg accggtgttg      2940
     cagttaccta gatgatatct taatttgggg atcctctcga gctcatcata agttcagtgt      3000
     taaattagtt tttgatcgta tgcgaaaata caaccttaaa ttaggacccg aaaaatgtaa      3060
     tttcttaaga aaagagcttg tttatttagg tcatcgtgtg acaacagaag gtattttccc      3120
     cgatagcgaa aaattaaaag cagttttgga ttatccggaa ccagttgaca aagctgcggc      3180
     ccaccgtttt gtagcttttg ctcagtatta ttcgaaattt attccgaatt ttgctaagta      3240
     cgcagctccc ttaaatcagt tattgcgtaa aaatgttccc tttgaatgga ctcaggaaag      3300
     aaaagattgt ttcaatcatc tcaaacagtg tcttgctact ccaccagttc tacagtaccc      3360
     tgattttgag aaacatcagt tcattgtgac tgcagacgcg tcacaattcg ctttaggtgc      3420
     cgtacttagt caaggagttt taggtgagga tcagcctttg gcgtatgcct cgcgtggtct      3480
     gaacaaacat gaggtaaaaa aatcaactcc ggaaaaagaa ttactcgcta ttcattgggc      3540
     tattcaacat tttagaccta ttttatatgg gtatagattt accgtggtca ccgaccatcg      3600
     ggcgtgggta agtctctttt ctcagaaaga tccttcttct cggttgacac gcatgagatt      3660
     agatttagaa cagtatgatt ttgaggtaat ttttcgccca ggaaaatatc agacaaatgc      3720
     agacgcttta agtcgtataa aaattgacag cgaatatctt aaaggtatta gttccgacaa      3780
     agaaattgat gtagttacgc gctcaatgag tcgtgctcag cgtgacatag aatccgctga      3840
     caaagtaaac acagcagctc cgttgtcgga atcctcagtt tcgaaatttg atcaccttcg      3900
     aatctgggac gccacttcgg tttctgccgt gcactctttg gaaactttat tgtttaaaat      3960
     tcacttttcc gactcgaaag cagggcgaaa aatacagtta tgcaatgata aacattgctt      4020
     gccaccgaac tcagttttga gcggttttgt tctaaacaaa gtaggtaaaa attatcaggt      4080
     cgaaattcaa tgtcgcaata attccgtgtt agacctacgt ttaatattgg agacgctgac      4140
     taaccgtttt ggtcacctga ttctgaagct gtcgcgtgct gatgcacttt tcgattatgt      4200
     aagtgttgac tcttttaaag actgtgtcaa caaattttct tttcctctgc aaattgtttt      4260
     gttttctcct tctgaggaaa tcatcgatcc aattcgtcaa caatcgatta ttgaatcatt      4320
     tcacaatgct aaagttggtc attttggtac aaagaaaacc ttagctcgaa ttaaacaatt      4380
     ctatcattgg aaacatatgc gcaaaatggt tgattctttt gttcaacaat gtcatgcctg      4440
     caagatgaat aaggttacca agcataataa agaaaaacta caaattacaa cgactccaac      4500
     taccagcttt caagtcgttg aactagattt agtcggtccc ctaccgataa ctgaaaattc      4560
     ttttcgatat gctctcaccc ttcaatgtaa tctaactaaa tatatcgatg cagtccctct      4620
     cactgataaa tcagcaaata ctgtagctcg tgccatcgta gaacaatttt tctgtcgtta      4680
     tggcttagca aaagttataa gaaccgatct aggatcagaa tttattaacg atgttttaaa      4740
     tcatgtctgt attttacttt cattagagca taatacatca actgcgtttc accacgagac      4800
     tcttggttct ttagaacgta atcatcgtgt tttaaacgaa ttcttacgaa tccatagtac      4860
     taacatggac agtacgtggg acaatcttct ccctttttat tgtttagctt ataattcaac      4920
     ccctcttgta gtaaataatt gcactttatc cccttacgaa ttggtttacg gcaaattgcc      4980
     tcaattacct aatgttgcta taccaccctc aatttcttat tctgatttat atagttataa      5040
     tgccgactta cgcaatcgct tagtccatgc acaccgcatg atgcaacatt atctccagca      5100
     gtttaaaatg aaacaaacaa ccaattcttc ttcttatact cctcgcaaat ttcagcctgg      5160
     tgatcttgtt aaacttcgcc tcgaacaaag aaataaattg gaccctgttt atacaggtcc      5220
     tcatgctgtc ttagaatcaa tcggtgtaaa caccaaaatc atgaaaaatg gtaaaccgta      5280
     tttagttcat aataatcgtt tattatctta ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5340
     aaaaaaaaaa aaaaaaaaaa aaaaaagttt ttttttctct gtgttatttt aagtgttatt      5400
     ttgtgttatt ctctgtgtta ttttcatatt ttgttcacct attttaggtt cactttcaag      5460
     agcggggg                                                               5468
//
ID   Gypsy-41_TrVa-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-41_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 345-345 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 194 BP; 43 A; 44 C; 36 G; 71 T; 0 other;
     tgtactgcct cagcagttat ttgttgtatt tgtttatatt cgcgaatgcg actgttctac        60
     ttttgttgat aaccaatact tttgaaacta gctgcttccg cggagacgcg gagtcgcaga       120
     atatacgttg tcttaaacac acttcatgtt gattatttcc catctctttc cttctcggct       180
     gtaagccgac taca                                                         194
//
ID   Gypsy-420_AA-LTR repbase;    DNA;    INV; 1194 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-420_;
KW   Gypsy-420_AA-I; Gypsy-420_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1194
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1194
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2056-2056 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1194 BP; 323 A; 343 C; 280 G; 242 T; 6 other;
     tgttaccgta tacgctaaca atcggtctgt cgacgcactg gcacggcaaa agaaattgct        60
     cattaatact tataacatca atccccaaac cccccccccc cttcctaccg aaaagattgt       120
     gagactacgc atgaagtacc caatggcaaa ataggtacgt tgattaattg caacaactgc       180
     ctattttgtc atccggtgta acttactaac gcttcaatgc ccgattcaat cgggcgaaat       240
     cgacgatggc agccccacat ccggggcgaa gacgaggagg gagaaatcgc gaaggaggac       300
     gaagaacgaa ggaaaggcag ttgatttctg gcagccaaac aagcaggaca tcagagagag       360
     cctcaaaagt tcaaaaagtg aggtgaaagt aaaaagttag tccggagacc tgtgaaggga       420
     ctccctcgtg caaggagcca gaatcaagga aattcccgcc gtggttgtaa cgccaactat       480
     acctagcggg cgcgcagtca gacccagtcc cggaggaacc acgtgtgccc cagcgtcaga       540
     taaccagccc aacgagatcc ggccaaaagc gacggctact acccatctct cgtgcctggt       600
     aggcgcggtg tctgaaaccc gccccggaag agccacgtgt gtcccgacca cctgttwgcc       660
     aactcgccgt accctccaac cggagcgacc aagccatcaa catctgacct gtccatctga       720
     gcatcctcgt ggccataact ggattggtcg gcagggtcgt cwaggagagg tcgtggttgt       780
     cacggcgtcg ggtgcaatcc atccaactgt gaaccastct gagaccgtcg ttgkaagtgc       840
     cgcaggawtc ggtagcggcg tgttaaaccc tccagaacac tgcagctgcc aggtatgtca       900
     tccggagctc cgactcccct tcgcatgtcc acmaagggcc ccaccgtcat ctatcggccg       960
     caacacttaa ctaaccctta aactaaccct aactctatca tgaaaaaaaa taaataagta      1020
     aaatgtacgc cacttctact ttccttattt catgggctat ttccctgtgc ttgtgcgtca      1080
     aatctcctat gttacgtcca cttcagctac ggtatccgtc gtgagtccct tgagcaggta      1140
     aataggcgac cctgagagcc aaaaacccaa cctacgagtt agccgtttct cgca            1194
//
ID   Gypsy-421_AA-I repbase;    DNA;    INV; 6634 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-421_;
KW   Gypsy-421_AA-I; Gypsy-421_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6634
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6634
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2045-2045 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6634 BP; 2373 A; 1476 C; 1114 G; 1671 T; 0 other;
     ggcgcccgaa tctgggacct gatagtaatt gtataagttc agtcgaacga agccaccttc        60
     agctgcctcc aagagagaat tcgtcatccc ggacccagag ccatcatcaa tcaagttggt       120
     gatttgagga gacggagcgc gaagaggtgc actaccagga tacccaaccc cggaaatagg       180
     accatccagg actgaggcgt tgtcccgcag tacaaaccgt acttcctgag cttcaaagga       240
     ctttccagga cctaggcgtt gtcccgcagc atgcgattgt gcttcctgat tctcttgtaa       300
     gtactattaa caacagaaag aaatagttta taagttaaaa ccgcacctca gtgtgtcaaa       360
     aatctaaacg cgaattcgcc tactaacaac acagtggtaa gcccggccca tccgtaagcg       420
     aaccactata atatcacagt ttaggcgcga actaacccta aaccaaaaca aaataaatcc       480
     gtaattaata aaatagtgaa agtgtgaaag tgtgaaagtg aaaactttgt gtgattaatt       540
     aagtagttca cctgtcctta atccttatca tgacccttcc aattatacaa cccgcacgcc       600
     tcaacatcgt gcaaaatcca cttcaagctc aaattcccgt tccagatcca atcccaattc       660
     cagtaccaat ccctgttcaa attccagctc caaacccagc tccaatccca aatcccgcac       720
     ctcgattcgt tattgatcga aacattagtt tcgaggatcg cggaaaaatt ccgcaaattg       780
     ttcgaggcct ccccgacttt accggtaatc cacgcgattt aagccagtgg attttggatg       840
     tcgaagatgt ccttgaactt tttgaggatc tgaaaagcaa ttttcagtac catcttctga       900
     tcaaaacgat cagaagaaaa atcaaaggag aagcgaacga cgctctcata accagcaata       960
     ctccaactca atgggacagc attaaagatg tcctaaagtt gtattatgct gacaagagag      1020
     atctaatgac tctcgacaat caattaaaat cgctcagacg cagcaagact gaaagtcttg      1080
     agagctatta cagcagagtt agggagctcg taaccctaat aagctcagct gttgccatgg      1140
     ataaccaatg gcaaggtttt gaaacggtgc taatgcgcct atacaaccaa atagcattgg      1200
     acacattcat taggggactt ggtgaccctc tttctagatt ctgcaaaaac tttaggccaa      1260
     cgagtttggc gcaagcctat agttattgcg tggactattt aaatttagac gctcgaaatg      1320
     caccggtaaa cgttccttct tggcatccac tcccttcttc ggcacctcca ttgcctaaac      1380
     ccaactttgt ggaaaggcct ccagttccac cgcgtcaata taatgctcat aacaatcttc      1440
     atagagcacc cccaatcaca ccaagaaata ttcaacaaaa taactcccat gctccacaaa      1500
     ataatttcaa ttatagagca cccccgatag ctcctcctcg aaactttcat caattcaact      1560
     ctcatgcaaa acccaatgtt tttgcaccca atagaacctt catacaaccc caaccacgtc      1620
     ctgaaccaat ggataccagc agtattcaca cacaccatgt gaattatggt aatagaccga      1680
     tagctcaacg tagaattgca agcgattcta tgcgagcaca tgacccagga gcaaaaagag      1740
     ccgcacatac tctggaacat gttcttgacc cttcggaata ccaaaaatgg tatgaagaac      1800
     aattagaact aagtagggaa tttttccatg aagaggaatt gctagagcct ctggaaaatt      1860
     tgaatatcga caacatcgcg gcaaatgaag aaaccccaag cgaagaaact aatcaggccc      1920
     aagagagcaa ttttttagag aacgataccg aatgggtggc aaaatggttc gaatgaaaaa      1980
     cgtttcgccg ctaccattca tcaaaatccc aactaataag ggatatatga aattactaat      2040
     cgattgtgga gccaacataa atataatatc caaaaaatgg gctctcactt ccggacaaca      2100
     aatttttaaa atacctcgac aaactgttaa aggtgttaca ggaaataacg ctatttccga      2160
     ggttacacat cttccaattt tttctccaat tgttaaccat gcttttgaat tttccatttt      2220
     tgatttccat actttcttcg acggaatcat aggaacaggt ataattttca acaaatattt      2280
     caatttcgtc tctaaccaag gaattctaca agtttttggc atggaaaaaa cgctaaacat      2340
     tcctatacat ttctatacac ccacaccagc acccaggaaa gtaaattcaa tcatagtttc      2400
     tgaaaaactg aggttagcac accttggtga acaagaaaaa tcgacgttaa tcccaatatt      2460
     agaagattat caggaattct ttcataatcc aaacagtacc ctttcttgtg ttacgaatgt      2520
     aaactgtgat attcgtacca ctgatgattt acccatttat caaaaaactt acccttatcc      2580
     catggcatac aaagatgaag ttgacaaaca aatgaaaaaa ctgatcgaat ctggcataat      2640
     tagaccatcg agatccccat ggaattctcc agtgtgggtc gtccctaaaa aaatggacgc      2700
     atcgggagag aagaaattcc gtctcgtaat tgattacaga aaattaaacc aaaaaacgat      2760
     atctgatagg tacccaatgc ctgagatatc aaatattctt gatcaactag gaggaaataa      2820
     atatttttcc acccttgatt tggcttccgg atttcatcag atcaagatga atcccaaaga      2880
     cattgaaaaa accgcctttt cggtcaacta tgggaaatac gaatttgttc gtatgccctt      2940
     tggcctcaag aacgctcccg ctatttttca acgagcaatg aacgatgttc tacgagagca      3000
     catcggtaaa cgatgctacg tttatatcga cgatgtggta gtttttggaa aagatcttaa      3060
     ggaacataat gaaaacttaa gaatagttct aaagacccta cacaaagcaa atttgaaagt      3120
     ccaactggac aaatctgaat tcatgcatac atcgattgaa ttcttaggtt acgtgatttc      3180
     agataatgga atcaaaccaa acgaaaaaaa gattgaagca atcatgaaat ttccggaacc      3240
     taaagatctt aagcaattaa gaggattttt aggactcatc ggatactaca gacgattcgt      3300
     taaagatttt gcaaaaattg caaaacctct aacaaatctt ttgagagggg agaagaatcc      3360
     cgattcaaaa aagcaaataa ttttaaaccc agatgaacgg aaatgttttg atactatgaa      3420
     aaacattctg actagcaacg acgttttagc ttaccctgat ttttcaaaac catttttgat      3480
     caccacagac gcgtcaaatt tcgctcttgg tgctgtgctt agtcaaggtg aaattggtag      3540
     tgataaacca atacactttg cctctagaac tttgaataga gctgaagaaa attattcagc      3600
     aacagaaaag gaaatgttag caatttactg ggctcttaaa gtattcagga attatattta      3660
     tggtcaaaaa tttaaaatag ttactgacca tcaacctcta actttttcct tatcacccag      3720
     aaatgtgaat gcaaaattga aaaattggaa atcatattta gaagaacacg attatgagat      3780
     cgtgtataaa cccggcagaa gtaacgttgt cgcagatgcc ttgagtcgca tccaaattta      3840
     ctcgcttaca ccaactcaac actcggcaga agatgatgac actaattaca ttctttcaac      3900
     tgaagccccc cttaacgtct ttaaaaatca agtcattatt gaaaaagtaa atgatagccc      3960
     agacacaata atcacaaatc ccttcccagg agtccgccgt atagtcctta aaagaacaag      4020
     tctaactgat caaatactgg cttcattact caaagaattt tttgatcctt ctaaattgaa      4080
     tggtttatat acttccgaag agatcttagg aaaacttcaa gaagtttata aacgattctt      4140
     cagtcgcgct ggtctcctaa aaatacgctt tacacaaaaa atacttacag atgtctcaaa      4200
     cacggaagag caagaaagaa tcattcgcga aacccattta agagctcacc gcggtattaa      4260
     cgaaaataag gaacaaattt tgcgagagtt ttatttccca aaacttacgc aaaatattaa      4320
     agattttata agcgaaccct tccaaataga aagccattac ttcctctcaa gtatcgacaa      4380
     attcagtaaa tacggtcgaa tggttcctat agaatccaga aattcagccc atattgaaga      4440
     tggaatatgg acaatattca cttcgcatgt tactcctgaa tctattgttg tagacaatga      4500
     aaaaggttta caatcaccaa ccattcgcgg ctggatgata gacctgaata ttcgtgtgta      4560
     tttgaccccc catcataaat ccgaagtcaa tggtgtagtt gagcgattcc actcaactat      4620
     cctagaactc tatagaattc aaaaacagat cactcctgaa acggctgttc gaaacctcat      4680
     tcaaacagtt gtcgaaaagt acaacaatag tattcactcg tccaccacca tgacacccaa      4740
     agaaattgtc tttgggaaga ctagaaatac tgaccaacta attgaccccg atcgactaga      4800
     ggaaattcga caaaaacgtt atgacgatgt tctagttagt ttaacaaaaa cgcaagacaa      4860
     acaactttca acaatcaata aaaaccgacg tgacccacca gagtttgttg ttggcaaaga      4920
     agtcttcgtt aaggacaaaa taatcagggc aaaacataaa ccaaaattta aaaaacattt      4980
     tgtacaacaa aataataatg tcacattcaa aaacgagcat aattccaaac tacataaatc      5040
     taatgttaaa aatatcaatg ttaaataatt tcagaatccc acacatactt tgtaacaaca      5100
     tcgaaattca caacgttagc aacgatccag tagtcatagt gaagatagga gaagcaagaa      5160
     tcatagaagg ataccagaaa ttcgtacatg ccatcaacat aacggacata gaacagtcaa      5220
     tatcgcagat agaaagtcac atatccacag taaacatcag ccatccagaa ctaatcacac      5280
     tactgaaacg aaagacagac gacctaagaa ataatataaa acaactcaaa ccaagacgaa      5340
     aacaaaaacg ttgggacgcg ctaggacgag catggaaatg gatgtctggt tcacctgacg      5400
     ctgacgacct tagaataatt acaaaaggca taaacgaaat ggtcgacaat agtaacaaac      5460
     aaatcaaaat taacgaccaa gtttttgata gtttaggaaa cctcacagaa ataactaata      5520
     aactcatcaa cattacagaa caaaattcca agctttcttc agaagaaact caggtattac      5580
     atttgatttt aaatttagac atcatcaatc aggagatagc aagcatacag gaagccataa      5640
     tatttgcaaa attagggaca gtcaattaca agcttctaac cacggacgaa atcatccaaa      5700
     ttgacgaatt gctaagcaac caaggcatgc acctggacct cttagaagaa gccatcaact      5760
     ttgcgaaggt gaccatcggc acaaacaacg agttattgct ctacgtggta aacatcccca      5820
     agttttatca tccggtctac gaagtactga aaatcgaagc catcttaaaa aattctcaac      5880
     gcatccattt gaaaggaaat atttatttac gaaacaagaa cgaattgtta ctacagaaaa      5940
     caccttgtga acgacttgga aattggagtc tatgctatca atcagacgtc gaagacattt      6000
     cggacgacaa ctgcgtttcc aaactagcaa ggggaacgga aagcaaatgc acatacgaac      6060
     ataatcccaa gcacccttcc gtaaccaaaa tcagcgaaac taccgcactt ctcaacgaca      6120
     ttaataccaa tcttcaaaca acatgtggaa tctccaatag gaacctaacc ggatcattta      6180
     tgatcatgta tcaaaattgt tctataacca ttggagaaca cactttaacc aacaacgtca      6240
     tcaaaacagt taaccaaaga atcttcatcc catcaacagg attaaaagta aaggaagaag      6300
     gactcgaacg taaattcgac atccacacac ttcatcaagt acaacaccag catttgaaac      6360
     aattgcaaca tcttaaatcc gcaacggcag ctaattcctg gtctctcata ggaggatttt      6420
     cattctcgac atcgatcatc atttttatca taattttcgt tatgttcaaa tttcgttctc      6480
     aaggcacctt cattcaaatt gaccgatcca acacttcacc catcgaggca cccacggcta      6540
     ccaaagacgt ccagtactat caaccagctt caaccattcc ggcagggcta accgtctaac      6600
     gttgacccag gaggctcaac actcggggga gagc                                  6634
//
ID   Gypsy-421_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-421_;
KW   Gypsy-421_AA-I; Gypsy-421_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2057-2057 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 76 A; 56 C; 59 G; 73 T; 0 other;
     agttatcacc cagtggccca cgcaccacag caaagtaaag caatcgtcat tcgtcagttg        60
     gtcacacgga ttatcgctga cgacgacaaa acatccgcgc ggtatcgcgt atcattctga       120
     ttgtttaggc taggaggcaa tatcgttttg tttattgtga ggtttgatga aagtaaaata       180
     aagaatgtcc agtcagttca tttctgaccg tgatcgagag tagacttttt ttaaaaagcc       240
     gaaccgtccg tcgaagactt aact                                              264
//
ID   Gypsy-422B_AA-I repbase;    DNA;    INV; 7029 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-422B_;
KW   Gypsy-422B_AA-I; Gypsy-422B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7029
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7029
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other. 5'-end is
CC   truncated.
XX
SQ   Sequence 7029 BP; 2109 A; 1462 C; 1526 G; 1932 T; 0 other;
     attgaacagt atttagaata tttgaattga gttgtcggaa gtaattagtt tagactttaa        60
     cggttagttt cgattagtga attaaattat ataatattgc attgaaattt tctacccgta       120
     ttcgattttg attaaggtgt tcagtacctt agtaacaaat tgaaccaaat ttgagtttaa       180
     actatagttt cacttttaat ttttctttaa atactaaata atgatggatg gctatcgcat       240
     taatgcgaat gacctccttg aagaggagtt ggactacgaa ttgagtcttc ggtcgcaacc       300
     gactaatgta ccgattgttg ccaaacgtcg gacgcttcgt aaatggctta gaggcaacga       360
     agatccgaac tatgtattga agtctcgtta tgaactcgct cgtgattatg tcactatccc       420
     gtacaaactc gacgaaattc aagatcaaat cgtgaatggt cgtggtgcag gttgcttgtc       480
     gcggttggtg cactaccata aacgtgtccg tcgttacgta ccgcgaacaa gtgaagagaa       540
     agatcgtcag cacacgcttt tgtatgtgat tgctcaagta gcagtgaaac attatgcagt       600
     ggattttagt gaagcgatgt ggatggtacc aacatgccaa gttgtgccat tttcgagaca       660
     gccaaccgct ccaacgatgt cggatgtcaa tgaggaccaa ggaccagtag caagtaccag       720
     tggaacacag caggcggtta gaggttcatt gggatcaacc gtccctggtc agattcatgc       780
     agtgtcgaac gccaaccgtg aattagaatc acaaggcctg ttgagcacag aggcgccggt       840
     cgatgagcag tgtcaagcta actcgacggc ggaagaaggt gccgttggag gtgtgtctct       900
     cacacaggct ctgaacaatc cgtttatttc atcggacaat gtacctgcgt cacgtgtgtc       960
     cgattatgtg ggacgaaatg tagccgcgaa tacagatcgt cgccggtctg ctcctggatt      1020
     tttgggtgat caggatactc aggctatata cgagcaacca cgaacgagta gttctcctac      1080
     agctatgggt aaatcagtca atccgacgat ttctgcaagt tttttggata aaacgtttta      1140
     tactccgcct ttccgccaat tttgcccaac aacgttcggt gaaaccgttt aacccaaaat      1200
     ctttgtccgt atcgcaacca ccaccggtga gagaaccggt taggcagaca ggtccgtcgc      1260
     tggttgaggt agcgacctcg ccggtacata ataaccctga aattaatgaa aggagtatga      1320
     gtgaatacgt tcatgcttca gaaatcgaaa cgtatgtgag agcttatctg gaaaagttga      1380
     tagacagtgg ttctcaacgc ctttcgccct cgaacttaga tgtcagccgg ttggccgatc      1440
     gaattgccaa cgtaggattc cgagacactg aggtgtttca gatttctcgc ggtgatatga      1500
     gaggtctaat aactcctgat cattctattc caccgttgca gttgccttcg caaaatccta      1560
     gcgagcgggt cgcagacatg gaaggcagac caatgcaacc gaaccgtgaa tcaggttcgc      1620
     cacgggaccc tcccttgaca gctcgtcaag gaatgtcaca gtcatcgtgg acacctttcc      1680
     cgaaccccta tgatcgtacc gtgtttccca atgctcacgg ctctttcggt tattctcaac      1740
     gtcagccaca tcagcaatgc aacattatcg aaaagtggcc aaaatttagc ggcgataata      1800
     acacgatccc cgttaccgat tttttacgtc aaatcgatat tttgtgccca gatagccgat      1860
     atttatgtgc cggtcttacg acataaataa gcaggatttg cgtagacatg ctcacttgtt      1920
     gtttaaggag aatgcatacg tgtggtatac gacatacgaa gatcggtttc agagttggga      1980
     aactctagag agctacctta aaatgcgata cgataatccc aacagggatc gtattgtaaa      2040
     agaggagctc cgtaaccgca agcagcgtcc gaacgagttg ttcagcgcgt ttctcgcgga      2100
     tattgagatg ctagcccagc gactaaatca caaaatgacc gaaagggaga aatacgaatt      2160
     gatcgtggaa aatatgaaga ttggctacaa acgtggcctc gctttggagc caatccattc      2220
     gattgaacac ttggcacaaa tgtgttacaa gtttgatgca ctcgaaccaa atttgtatag      2280
     cgtaggaggt caaactaaac cgattatcca tcagctcaca accgaggatg aagagggaga      2340
     agattatgac gtagaggata tggagcacat ttgcgcgctg caaaagcggt ttggaaaatt      2400
     ttcacgagtg aataaagata ccaccggggc tgttccaacg tctagcctcg aaaacccggc      2460
     taagaccacc gtgtcacagc tagtgtgttg gaattgtaga cagactggac acctgtggaa      2520
     ggactgtaac cagagaaagg aaatcttctg tcatatttgt ggacacgtag acacgactgc      2580
     gttcagatgc cccaatcggc ataacttgaa gccacgtgat gatgaggagc caaaaaacga      2640
     atgagtgagg aaccgtttgg gaatcgctct tcctcctccg tagaaattca gattcctacc      2700
     actcattatt ccgtgtttaa taaaatcctg caaattgaca cccttgtaca caagtgtccg      2760
     catctaaaag tgcgaataat gtcggaggaa gttgaaggtt tggccgatac gggagctagt      2820
     ttgtccgtac taagctcagt caaccttatt aagaaacttg gtttgattat tcaccctctt      2880
     aaactccaaa taaccactgc agatggaact ccatacaatt gtctggggta tgtaaatcta      2940
     ccggtgtcct acaaataaac aacccatgtt ttaccaacaa ttgtagtgcc ggagatgaaa      3000
     aaagatctca tccttggagt cgacttcttg aacaaattcg ggtttcaatt agttggtcct      3060
     agtttatctg aacataaaag ctctcaagaa ggcttgatgt gtgccgaaga gtactttgaa      3120
     gaccgagaaa agatttgttt tcagttggag cccattacac catccgaaca gctaaaaaaa      3180
     ccaaaacctt gaagttgatg atagtctgga gataccaact attgaaattc cagaaaatcc      3240
     gttgaactgt cctgaagata ttgttactga acattatttg tccgaacaag atcgtttagc      3300
     cctgtttaat gtggtaaaac aactccctgc cactaaatct ggatctctag ggcgtacaaa      3360
     aatcatggag caccagatag agttacttcc tggagcacag cctcggaaaa ttccatccta      3420
     ccgttggtct ccagtggtag aacaagtaat cgacgctgaa gtagatcgga tgctaaaatt      3480
     aggggtcatc gaagagtgtt caggagtggt agatttcgta aatcccctcc tgccaatcaa      3540
     aaaaagtaat ggtaaatgga ggatatgcct agattcgaga cgacttaacc agagcacgaa      3600
     acgtgacgac tttccctttc caaatatgat gggaatttta caaaggatcg aaaaatcgaa      3660
     atacttttca gtgatcgatt tatcggaatc ctattatcag gtgccccttg ccaaggatgc      3720
     gaaaaataag acggcttttg aaacaaataa aggtttgttt cgctttaccg tcatgccatt      3780
     tgggctcacc aatgccccgg cgacaatggc tcgtttgatg tctaaggtac tcggtcatga      3840
     cctagaaccc cgggtatacg tatacttaga cgatatcatt atcgtttcta ataagcttga      3900
     agagcatctt gaactcatca agattgtagc cgaacggctc cgtaaggctg gattgaccat      3960
     caaccttagc aaaagccgat tttgtcaaac tcaaatccgg tatctgggtt acgttttgtc      4020
     cgatcagggt cttgccatgg acgacagcaa aatccaaccc gtattggatt atccaagtcc      4080
     caaaactgtc aaggaaatca gaagactcct cggattagct ggtttctacc agaaattcgt      4140
     acaaaattat tcagaaatta ctactccgat aaccgacctt ctgaagaaga gcaagaagaa      4200
     aatcatatgg accgaggagg ccgagcaagc tttgaccaaa ctcaaaactg cgttagtcac      4260
     tgcccctatc cttgcaaatc caaactttca aattcctttt attctggaaa cagatagttc      4320
     ggatttggct attggtgccg tgctggtaca gactcaagat ggtgaacgcc ggaccattgc      4380
     ttacttctcc aaaaagctgt ctagcactca acgccggtac agcgctacag agcgtgagtg      4440
     cttagcggtc ctgatgagca ttgagcactt taaacatttc ttggaaggaa cgcagtttat      4500
     agtgcaaacc gatgctatga gtctgacgtt cctgcacagt atgtctatag agtcgaagtc      4560
     ccccagaatt gctcggtggg cgttgaaatt ggccaaatac gacgttttat accaatataa      4620
     gaagggatct gaaaatattc ccgcggacgc gttgtcacgg tccatttgta ctattgatca      4680
     accgatgttg gacccataca tcgatcaatt acgatcaatg atcgaaaagc atcctgaacg      4740
     ctacaaagat ttcaaaatca aggatagcaa aatctataag ttcgtcacaa atagtaccct      4800
     gatcgaagac cccggattca ggtggaaata cgttgtaccc tttccggagc gtcgagatct      4860
     aattaaggct actcatgaac aagcacatta tggttccctc aaaaccttag catgcctacg      4920
     cgaacgctat tactggccga gaatggcttt tgatgtgcaa cgttattgcc ataactgttt      4980
     gatttgcaaa gaatcaaaaa cgccaaatct caatgttcga ccggtctgtg gaaaaccaaa      5040
     gatctgttcg aggccctggg aaatgatatc cctagacttt ctcgggcctt acccaagatc      5100
     aaagaatgga aacatttggc tattggtagt atgtgaccat ttctccaagt ttataatggt      5160
     ccaatgtatg cgcagtgcaa ccgcccccgc agtatgcatg tttgttgaaa accaggtgtt      5220
     caatttgttc ggagcgccgg ccatatgtat aactgataac gcgaaagtct tcaagtctga      5280
     gtcgttcaca aagctactga aggcgtatga agtctctcac tggaatctcg cagtgtacca      5340
     tccctccccg aatccagttg aaagggtgaa ccgagttata gtaaccgcaa tacgctgttc      5400
     tttacatgat cagaaagatc acagagaatg ggatcgttct attcataaaa tagctcaagc      5460
     catccgaaca actgttcatg atagcacagg acacactccg ttctttataa acttcggacg      5520
     gaatatggtt agttctgggg ccgagtatga tttcttaaaa gaaacagacg acccagatcg      5580
     tactcctatc aaactcagtg aagagatgaa accactgttt ggaattgtca ggaagaacct      5640
     tatggttgcg tatcaaaaat actctaaagc atataacctg cgagcaaata cgagacataa      5700
     ctttgagcca ggcaacatag tttttaagaa gaacgtcaat ttgtcggaca aaagtcgtga      5760
     ttttgtgggc aaattagcaa gcaaatttac caaagtccgc gtaagggaaa aagtaggtac      5820
     caattcctac attgtcgagg gcttagacgg taaaaggatc tccggagtgt accacgggtc      5880
     attcctcaaa agagcttaag cagactccca aaaactcaag ctatgtcggt gtcatcattt      5940
     ggtgcacata aacgaaaagt attaatatca taaaacactc tccagaggtt gtttattacc      6000
     taccaacgtt agagaagtca tgtccatgtt acctcacgtt gaaggcatct catgcaacag      6060
     gcaagatgca aaaagaacaa gctatgtcga tgtagagccc agtatccatc aaccacagca      6120
     taaattgtcc aaaaatactc ctcgaggtac tcgtatccgt gttcgagatg tcacacctgt      6180
     gtttcctcgc acgtagatta gccattagta atcgtttgtt ttgtatccgt aactgtaagt      6240
     gatagtttta gcaatcaatg tacatgtcgg tatgtttcga ataagaatta gggtacttac      6300
     agataatatt ctatccacta caatagtttc cgtattgatt ccgagtagag cagtcagtat      6360
     aagacgtttt tttcacaata gtaccgagtt ccattaaaat ttaaacataa tttcactaca      6420
     attttcaatt tgttttcacc ttccaaagta atttgacagt tttgtttttg ttttgattcc      6480
     ttttctctca ttagcgtatt tttgcgatgt tttctacacg gttattctga atggaaagca      6540
     ctccctctca gagagcgagc ttttgggcgt gaatgagtat gagtaggttt aaagtttcgg      6600
     tacacgttcg tcaagaaata gttatttcca atcattattg gagttatttc attagtgaac      6660
     aaaaagtttt cagatatttc tgaagttatt cggttaatgg ttaagagaag ataatcagat      6720
     ttgtctgatg ttaatgagat ttgtatggat gaatgaagaa aggttcaatg taggcaagag      6780
     ttaatactgg ttcagaatat ccggtggaac atttcaattt gtgtttaaag ttcaagttgt      6840
     tagaattcca ttccttacat tacattttca actcgatagt aataatttct caatatgtgt      6900
     tatgtgtagt ttcggttcac tgaaaagttt ttgtatgacc atagttataa tgaataagct      6960
     caaatttcaa aaaaaaaaaa tgaaatttga aaatttcatt tttattttta atttaagcat      7020
     cggcgaaaa                                                              7029
//
ID   Gypsy-422B_AA-LTR repbase;    DNA;    INV; 1766 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-422B_;
KW   Gypsy-422B_AA-I; Gypsy-422B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1766
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1766
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2085-2085 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1766 BP; 532 A; 330 C; 385 G; 519 T; 0 other;
     tgtaacaata aattttaaca tggatcttgt tcaccgttaa taaaattaac agtgtaacca        60
     aagcttctat aaatttagac ccttttgcaa cacatgcgcc atctcccgta ttagtagaga       120
     catctgaagc tttgaaattc aaaagctccg attgatcgtt tcaaataacc ggtgagagcc       180
     tccacaggat ctcatttagc tgaccaaaag acaaatttga agaacctatt tgaactaatt       240
     tggactgcaa gcggaaatct gctacctgcg tgtataggat ttatacagcg aaaaaggtag       300
     agcgagatcg gaaaaatata aatgagtaag gcaaaatgag atggggtgtt tctaaattgc       360
     gttcaaccaa aaataggtac gcaattgggg ggattttata aaaactaaaa ttttgctgcg       420
     gacattttat tctcgtgcga tttgtcaacg attcgaaatc ggattttgag aagggaaaag       480
     ttgaacgaag agttgaatag ttgaagaact cagagcaaat ccaagtggaa ttgtgcaaat       540
     aggttaaaag ttcctaaaac ttttctaata gtgcaggtga aattccttta aaattaaatg       600
     tgctaatatt tcgttaattt aaataattct ccttagaaaa aaaacagtgc caagaacgcc       660
     attttgaaat tcaccttttc agtaaattga attcctaatt ggttcgaggt aaggtgaatt       720
     ttctgttaaa tttaatgtat tttgaattaa tatcgaaata tcgaatgacc aggtgaatcc       780
     cgctggtcat tgcgggcgtt tatgctaggt tgtgaagtgc gtactcaact gaagaaaccg       840
     tgactggaat tacccgtctt cgagtcgaac caccctagcg aactctattg cgagcggctg       900
     gccagcgtgc aacatccgaa agctctcttc gcatcgtctt gtgtcgcatc agtaactcgc       960
     tcaccacgct cgtcgcaagc tccctgtcgc tctcgaaaca tcgcacgaaa gagacacgag      1020
     gcaccgaagc ttttgagtgt gccatctgca ggtgagaagt gacaactttc cgtactgcta      1080
     agggagtacg cgaccaacga tttgatcggt acgtgggcaa gttagttgcg aaggctcgaa      1140
     tcgatttagg aattgcactt ttgcatgcgc atgcgatcac gtggaaagga gatcacgtgg      1200
     gaggattatc gccgatgaag tgacctcatc agtggattgg aggattcctg ggatacagct      1260
     gacaaccggc aggtttgctg atagaaaggt cagagatttt atttgtactt ttttttcctt      1320
     ttagtttgta agaaccaaaa ataataggtt taggatttaa accaaattcg gtgacgtcac      1380
     cttcaagcaa gtttaggcct atgtatactc ttttgaactg caataaactg gatttgaaaa      1440
     cactaggccg accctatttc gaaggttgac gagttatacg atttgaatta ccaagaaaac      1500
     ttaaataatt tgtctcattt agctttatta ttttgcgtat tgaataactt taaacttttt      1560
     gtacatattt tcctaatttg attagttcag ttgggtacac tttgaaacca accttgtggt      1620
     tagctaggtg tgatcggtgt ttgagggaga aattcaaccc gccctagata agagcctttg      1680
     ccgggccatt aacagcctca gcagcctcac tttcggtgag tggcgcttaa gctgctgctg      1740
     gtcttgaacc tgaagcattc gttaca                                           1766
//
ID   Gypsy-422_AA-I repbase;    DNA;    INV; 7066 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-422_;
KW   Gypsy-422_AA-I; Gypsy-422_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7066
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7066
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 7066 BP; 2128 A; 1459 C; 1550 G; 1929 T; 0 other;
     ttttggcgcc caacgtgggg cccgaagaat atctcattag tttcggatta gtttagagac        60
     aattcggatt ggataaattt agaatattag aattgagttg gtcgaagtga atacacttcg       120
     ttgaatttga ataagtttgg ttagacaatt agcttacgtt tattgaattg aaattttcta       180
     cctggattta agtttgatca aggtgttcta aaccttagca ataaatcgaa ttaatatttg       240
     aattcggata gtatttttct tgcattttaa attaattcag aatggatggc tatcgtatta       300
     acgcgaatga cctccttgaa gaggagttgg actatgaatt gagtcttcgc tcgcaaccga       360
     cgaatgtgcc gattgttgcc aaacgtcgga cgcttcgtaa atggctgaga ggcaacgaag       420
     atccgagtta cgtaatgaag tctcgttatg aattcgctcg tgattatgtc actataccgc       480
     ataaactcga tgaaatcgaa gatcaaatcg ttaacggtcg gggtgcaggt tgtttgtcgc       540
     ggttggtaca ctaccataaa cgtgtacgtc gttacgtgcc gcaaacgagt aaggagaagg       600
     atcagcagga catgctgctc tttgtgattg ctcaggtagg agtgaaatat ttttcagtgg       660
     atttcagtga agcaatgttt atggtaccaa cttgccaagt ggtcccattt tcgaggcagc       720
     gatctgtccc aacgacgttg aatgtggctg aggaccaaca accagtagcg agcaccagtg       780
     gattgcagcg agcagttgga ggtttaatgg ggtcaaccgt acctgaaccg attcctacca       840
     tgtcgaacgc caatcgcgaa ttggaatccc aagccctgtt aagcacggaa gcgcctatcg       900
     atgagcagtt tcaaccgaat tcgactgcgg aagatggtgc agttggaggc gtatcgctca       960
     cccagcctcg gaacaatccg tttatttcgt cggataacgt cccagcgtca catctgtccg      1020
     aatatgttgg acgaaatgta gccgcggatc cagatcgtcg tcggtcggct ccaggatttc      1080
     tgagtgatcc ggatgtccag gcgatacccg aagcaccacg gactagcagc tcacctatag      1140
     caaaggattt acccgtcaat ccgaccattt ctgccagttt gttggacaaa acgttttaca      1200
     ctccgccttt caaaactaat tttgctcagc aaaggtttgt taagccgtat gatccacagc      1260
     aattgtcatt gtcgcaacca ccaccggtga gggaaccggt tagccagaca ggtccgtcgc      1320
     gggttgaggt agcgacctcg cctgcaccta ataatccgga aatgaatgaa aggagtatga      1380
     gcgaatacgt tcatgcgtca gagattgaaa cgtatgtgaa agcttacctg gcaaggttgt      1440
     tggacagtag ttctcaacgc gcttcaccat cgaacctcga tgtcagccgg ttggcagatc      1500
     gaattgctaa cgtgggattc cgagatactg aattgtttca gatttctcgc ggagatctga      1560
     gaggtttaat aactcccgag aattctatgc caccgttgca aaacccaaga gagcgtgttt      1620
     ctgaaatgga agacagacca atgcaaccga atattctatc ggggtcacca cgggaccctc      1680
     acttgacagc tcgtccaggc atgtcgcagt catcagggac accctttccg aactcatacg      1740
     accgtacagc gtttcccaat gctcacggtt cttccggcta tgtacgtcgc caaccacacc      1800
     aacaatgcaa cattatcgag aagtggccaa aatttagtgg agataataac acgattcctg      1860
     ttaccgattt tttgcggcag atcgatattt tgtgccggtc gtatgacatt actaagcagg      1920
     agttgcgcag gcatgctcac cttttgttta aggagaatgc atacgtgtgg tatacgacat      1980
     atgaagatcg gtttcagagt tgggaaaccc tggaaagtta cctaaaaatg cgatacgata      2040
     atcccaacag ggaccgtatc gtaaaagagg aacttcgtaa ccgtaaacaa cgaccgaatg      2100
     agttattcag cgcgtttcta gcaaatattg agatgctagc ccaacgactg aatcacaaaa      2160
     tgaccgagag ggagaaatat gaattgatcg tagagaatat gaagattggg tataaacgtc      2220
     gtctagcttt ggagccaatc aattcaattg agcacttggc tcaaatgtgt tacaaatttg      2280
     atgccctgga gccaaatttg tatacaggcg ttggtcaaac tataccgacg attcatcagc      2340
     ttaaagcgga cgacgaagag gaagaagatt atgaagggga ggatgtggaa caaattttca      2400
     cgttgcagaa gcgatttggg aaattttcgc gggtaaataa agacgcgaaa gcagcaggta      2460
     caaagtctag tttagataac tcgactgcta caacattacc acagctagtc tgttggaatt      2520
     gtagacagac gggacatctg tggaaagatt gtaatcagaa gaaagaaatc ttctgtcata      2580
     tttgtggaca tgtggacacg actgccttta gatgtcctaa tcgacataat ttgaagtcgc      2640
     gcgatgatga ggagccaaaa aacgaatgag tgaggaaccg tttgggaatc gctcttcctc      2700
     atccgtagaa aatcagattc ctatttcaaa ttattcccta ttcaacaaag ttcttcagat      2760
     cgacacgcga gtgcacaagt gccctcatct gaaagtgcga attatgtcgg aggagattga      2820
     aggtttggcc gatacgggag ccagtttatc tgtaattagc tcggtcaaac taattcaaaa      2880
     actgggtttg agtattcatc ctctcaagct tcaaataacc actgcagacg gaactccata      2940
     ccaatgtctt ggatacgtta atttacccgt gtcataccaa tcaactaccc aagtgttacc      3000
     aaccattgta gtgccagagt agaagaagga cctaatttta ggagtcgatt tcctaaataa      3060
     atttggattt gaattggttg gacctggttc gtcgcattca gcacttcaaa caggcttaaa      3120
     ttgtgcagaa gaatattttg gagatcggga aaggatttgc ttcaatttag aaccggcatc      3180
     gatatcagga tacccaaagg aatcaaacat tgaagtcgat gaaagcctcg agatcccaac      3240
     tatagagatt ccggagaact cggtaagcaa accggaggac atcattaccg aacacgattt      3300
     atccgaagag gatcgttcag ctttgttcaa cgttgtgaaa caacttcctg ctaccaaaga      3360
     aggatcgcta ggtcgaacca agattatgaa gcatcaaatc gaactacttc ctggagctac      3420
     accgcgcaaa attccaactt accgctggtc tccagtcgtt gaacaggtaa tagatgcgga      3480
     agtgaatcga atgcttaagt taggggtcat cgaagaatgc tcaggagtcg tagattttgt      3540
     gaaccctctt ctccctatca agaaggctaa cgggaaatgg aggatatgct tggactcaag      3600
     acgtttaaac caatgcacaa aacgcgacga ctttcccttc ccaaatatga tgggaattct      3660
     acagaggatc gaaaaatcta aattcttctc ggtaatcgat ttatcggaat cctattacca      3720
     ggtgcctctt gaaaaatccg caaaagataa aacggcattc aaaactaaca aagggctttt      3780
     tcggtttaca gtcatgccgt tcgggttaac taatgcccct gcgactatgg ctcggctaat      3840
     gtctaaggtt ctgggtcacg atttggagcc tcgagtatat gtatacttag acgatataat      3900
     tatcgtttca aatactctga aggaacatct cgagcttata agtatcgtag ccgcacgctt      3960
     acagagggct gggttgacga ttaacttaag caagagtcgt ttttgtcaaa cacagatccg      4020
     ttaccttggg tacgtgttat ctgaacatgg ccttgcaatg gacgctagca aaatacaacc      4080
     agtgttggat tacccgagtc ctaaaacggt caaggatatt cggagactcc tcggattagc      4140
     cggtttctat cagaaattcg tgcaaaacta ctccgatatt acgaccccca ttacagatct      4200
     cttgaaaaag aataaaaaga aattcgtatg gaccgaggag gctgaaacag cgctgacaaa      4260
     actaaaaacc gctctagtta cagcccctat tctggcgaat ccaaatttcc agattccgtt      4320
     tatattggag actgatagtt cggatttggc tatcggtgca gtgttaatac aaatccaaga      4380
     cggtgaacgt cgaaccatcg cgtatttctc taaaaaacta tcgagcacgc agcgtagata      4440
     cagcgctaca gaacgggagt gtttagctgt tctgatgagc attgaacatt tcaaacactt      4500
     tttagaagga acgcagttca ttgtgcaaac ggatgcgatg agcctcacgt ttctgcacag      4560
     tatgtccatc gagtcccgat cacccagaat tgcccggtgg gcattaaaat tagcaaaata      4620
     cgatgtcttg tatcagtata aaaagggttc ggagaatatt ccggccgacg cattatcgcg      4680
     gtccatttgt accattgact gttcaattcc ggacccatac atcactcaac ttcgagatat      4740
     gatcgagaaa taccccgaac gctataagga cttcaaaata actgacggaa aaatatacaa      4800
     attcgtgact aacagcaccc taattgaaga cccaggattt aagtggaagt acgtcgtacc      4860
     gttaccagag cgccgtagcc tcatcaaaca gacccatgaa caagctcatt atgggttcct      4920
     caaaaccctt gcccgattac gcgaacgcta ttactggccc cgaatgtcgt ctgacgtgca      4980
     acgatattgt aacagttgtg tgatttgcaa agaatccaaa accccaaatc ttaatgtcag      5040
     acccgtttgt ggaaagccaa agatctgttc cagaccctgg gaaatgatat ccctggattt      5100
     tcttgggcca tacccgagat cgaaaagtgg taatatttgg ctcttggtag tctgcgacca      5160
     tttctctaaa tttataatgg tccaatgcat gcgcagcgcc acagccccag ctgtatgcat      5220
     gtttgtggaa aatcatgtat tcaacttgtt tggcgtaccg gcaatatgca ttacagataa      5280
     cgcgaaagtc tttaaatccg aagctttcac taagctactg aagacttacg aagtcacgca      5340
     ctggaatctg gctgtatacc atcctagtcc gaaccccgtg gaaagagtaa acagggttat      5400
     agtaacagct attcgttgct cccttcatca gcaaaaagac catcgagaat gggatcgatc      5460
     tatccacaag atcgcccaag caataagaac cacggtgcat gatagcacag gccacactcc      5520
     gtttttcata aattttgggc ggaatatggt tagttcgggt gctgagtacg actttctgag      5580
     agaaatagag gactcagatc gtaatcccgt taaactgaat gaagacctga aagcactatt      5640
     tggtttggtc aggcaaaatc tcatgaaagc ctatcaaaaa tattccaaaa cgtacaacct      5700
     tagagcgaat acgagacaca actttgaccc tggcaatatt gtattcaaga aaaatattca      5760
     cttgtccgac aaaagtcgta attttgtggg taaactagcg agcaaattta ccaaagtccg      5820
     aataagagaa aaagtgggaa ccaattccta tatagttgag ggcttagacg gtaaaaggat      5880
     ctccggagtt taccatgggt cattcctaaa aagagcttaa acaagctctg aagaactcaa      5940
     gctatgtcgg tgtcatcaaa cggtgcacat aaactaaaag tattgtaatt acataaaaca      6000
     ctctccagag gttgtttatt ccaacgttag agaagtcatg taagtgttac ctcacgttga      6060
     aggcatctcc tgcaacatgc aagatgcata aagaaccagc tatgtcgatg ttgagcaccg      6120
     tctccatcaa ccaaaacatt aggtccaaaa tactcctaga ggtactaaca tccgtgctcg      6180
     agatgtcaca cctgtgtttc ctcgcacgta gattcgccat ccgtatagtt aggtgtcgtt      6240
     tttgtcccta gaatatagtt gtcaatgaat ctttagttcg ttatgtttca gttcagattt      6300
     agtatactta cagttcgaaa gtccgtagca gcaatagtaa ttcagttaga tcccaataat      6360
     cactatctgg aaatttcgtt tacgttttgc aatagtccgg ttttatgctt aaaattctac      6420
     ttaatttcaa taactttgca ataacactac catccagctt tgataatcca tatcactttg      6480
     acagttcttg ttttgatttt gttttcttat aagatcactt tctgcgatgt tttctatccg      6540
     gttattctga ttggaaagca ctcccacttg gagagcgagc ttttgggcgt gaatgagaat      6600
     gagtacgttt tagtttaggt acacgttcgt gaagaaatac gcatttccaa tcattattgg      6660
     agttatttcg tttatgaatc aaactcggtt tttcagatat gtctgaagtt agtcggttag      6720
     tacgtaaggc aaattaatca gatttttctg atgttgatga gaaggaagag taaatgaaga      6780
     gagttggatt aagttcagga atgagattag actggtccag aatatccggt agataatttc      6840
     aatcattttt gttaaaattt caataatttg tataaagttc aaagtaaatt tcgttcatat      6900
     tacatattca atccatttcc caccgttcct cggttaagtt tgtgtaaaga ttcggttctt      6960
     aattaagtgt tagtacaatg gttaatgtaa ttaatatttt caaatttcaa aaaaaaaaat      7020
     gaaatttgaa aatttcattt tttttttaat ttagcatcgg cgaaaa                     7066
//
ID   Gypsy-422_AA-LTR repbase;    DNA;    INV; 1744 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-422_;
KW   Gypsy-422_AA-I; Gypsy-422_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1744
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1744
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2021-2021 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1744 BP; 504 A; 344 C; 375 G; 521 T; 0 other;
     tgtaacaatg tatttagcat ccaatcttat taaccgttaa gtcaacttaa cagtgtataa        60
     agttatggta catcagaccc tttcagcaac tgacacgcca tctcgatgaa tgagttggga       120
     catctgaagc tttttcaata aagtttatat tcaaatgttc ccaaaagctt ccgtgagcac       180
     ctccacagat ctcatttagt tgatcatgaa gcagatcaag tgccttttta aactgatcgc       240
     gcagatattt tgtatatccg ctttgctgcg atcttttgta atactaaaaa agaactttga       300
     gatgagatcg cgatatacgg ttagcgtaag gcagaatgag atggggtgag aataaattgc       360
     gttcgtatca aaataggtac gaattcatag ctttacataa aagcgaaatt cctgtaaggg       420
     gactattatt ctcgtgcgat tcgtcagctt ttatagttcg gtgtgaatag caaattatag       480
     taaagttgaa ttctattata gtgtgaaata agcttatatc atttaaataa gctcacaatt       540
     agtgcaggtg aaaagctttt aattttatag tgcttccaaa ttatatcaaa agttattagt       600
     tacaggaaaa gttgcattca gattgtgcac tgttaaaaca accttaacag atgtgaataa       660
     tttctgttga tctaaggtaa gacgagaatt atgtgcaaat taaggtgctc aatttagtgt       720
     tcgtaaattc gcttgaccag gtttttcccg ctggtcatcg cgggtgttta tgtgtggtgg       780
     attttcatcc gaccgaattc gatccgcaca cgttccccga ttgcgagtga accagtctag       840
     tgccgcaacg tacaccgcca taaagcttcc cctcaagttg gctacgcaac gcgacccgca       900
     acatcaaagc tcatccgtta cgtcacttgg ctgttgtcga aacatcgcac gataggcaaa       960
     cgcttgcctc cgaaagcttc gtgtacgcca tctacacacg agtagcagca acgacaatca      1020
     tcgccagcgg agtgggcgat catatacgca accgccattt gctgatggtc gacggtagcc      1080
     taacgtaagt acgccaccta ccagtgaagc tttttgcggt tcggcccata cgcatgcgca      1140
     tgctcgaagg acacgtgagt gggattgttc tgcgtgggag ttaaggacga attcccgcat      1200
     ctcgtcgaag cagaacctga tcgccggaag ctgaacaggt ttgacacctg cacaaggtca      1260
     gattttgaag attgtatata tttttccctt ttactagcta gtaagattag aaccatagaa      1320
     gtaagcatac aaaaccaatt ggtgacgtca ccctcagata gataggcctc tgtaaatgaa      1380
     tttgaattta aataaacagg atttgaaaac tattaggcct acaccaaagt gaaggttgac      1440
     gaagaaacga tttgatattt caggaattaa ttcagcaaat ctcattgagc ctttgttgat      1500
     cgtgttttga actagaattt tttaaatttt tagctaatta gtataatttt tgaattggat      1560
     tagtttagat tggtattctt tgagtcggct ttgtggtttg ctaggtgttt ttcggtgttt      1620
     gagggataaa ttcaacccgc cctagaaaag agcctctgcc gggcctttaa cagcctcagc      1680
     agtctcacct tcggtgagtg gcgcataagc tgctgttggt cacgtacctg aagcattcgt      1740
     taca                                                                   1744
//
ID   Gypsy-423_AA-I repbase;    DNA;    INV; 6351 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-423_;
KW   Gypsy-423_AA-I; Gypsy-423_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6351
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6351
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2046-2046 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6351 BP; 2160 A; 1113 C; 1235 G; 1842 T; 1 other;
     aatggcgccc aacgtgaata attgtaaagc ggattgaacc acctgacgaa gttttctttt        60
     tggagtcatt cgcttattaa aagatgattt tgagttttca tataaaatgg ctgatctctc       120
     ttgtaaatat gtatataaat tttttattga attattttga attacctttt taattgcatg       180
     aactgatttt tttttctcat aatcgttttg aagtacctga agtgaattat tattattatt       240
     atgttgaagt gcaataagtg agtttattaa gttatattga atttgttttt tgtgcatgaa       300
     gtgatttttt ttatttgaaa tgaaattgat ttaggtgaaa tttatttgat aaatgtagtt       360
     tcttagattt tcaatcaaaa gtgaattagt gcatgaatta gattttgaat ttcatttgtt       420
     ttttttttta ttattatttt tattttgaat cccaccaagg attttgtttg gtgaaacaag       480
     aaaggccgat tctcaaagaa agttattatt tgtgsaacaa aagagttgat ttgaatagtg       540
     aaaaaggaca ctaaatagtg aaaaaggaca ctaatggcga aagcaattca aagtgaagaa       600
     gattttttgc aagcgttcaa tatttttgaa aacgaagaag ctagtccggt gatgagaata       660
     agcgaaatga gtgaaaagca agttcgaaga ctttcgattt cccccgcttt tagggaggaa       720
     cttgatagag tatacgcgaa gaaagcagca gaaaacggta gtgtaattga gaaggacaga       780
     aatagtgaag aaatgcatga agataatcgt tcgaaaattc cgatcccgcc caaattacca       840
     caaaatcgtc caatggtggt gattgaagag aaagaagaag aaaacaatca aaggtataca       900
     ggaacaatcc ctaaaactaa tgcaagaatg gaagaacaat tgttagaaga aaatggtgct       960
     ccaaatcttg atcttaactt tgaacccaat ttacctgaat tttcaattga aagcagtgta      1020
     agcaatatgc ttccacctgg attcaatatt aaatctggca atctagcttg gaatagtaac      1080
     ccacttttcc ataatttaaa tgccaaccag aattctaata aaaaagcatt agctgtttca      1140
     caatggccaa taaaatacgc tgggaatgat aatggcattg gattgaattt gttcctccgt      1200
     cgagttgaat tttttgctca atctgagaac atgactaaat cagatttgtt ccgatcagct      1260
     cactttttat tagttgggcc agcccaagac tggtttgtgg caaaatggcc aatattacga      1320
     tgcaaggatt gggattattt tatccaggct ttaagaaacc aattcttacc caaaaacata      1380
     gaccattaca taaaaattag gtcattttca atgtttcaag caaaacatga gcttttttcg      1440
     aattttttgg ttcgcatgga acagtttttc ttatgcagaa caaccccact accggatcag      1500
     gacaaatttg acattatttg gcacaccatg aggccaacct acagagacaa gctagctctg      1560
     atggatgtta aagatttaaa ttcacttgaa aacttttgca caaggattga taatagtaat      1620
     gaagcattaa tgaaccgttt tgtcctttca ttcgaaaaca ataaggtgaa tgaggtcaca      1680
     agcctagcta gatttgaatc tccatttctt tctaatcaat cttccactga accatccaac      1740
     agcaatagga atcagcaaca aaatctgcaa tcaaattctc gaaataatca aaataataat      1800
     cgcaaaaaca acaataatcc aacacagttt caaaactcca accgaccaca ataccagaac      1860
     tcagcgaaca atcaaaatcg gtatggtggt aatccaaata gggtgattga agaatacaaa      1920
     cctgagaaca gttggagaga tttaacgtta gatgatattc tcaaatttta cagaattcca      1980
     gatcgcaaag tatgtttcaa ctgccgcaag ttcggtcatc attataccag atgttactca      2040
     agacgaactg tcttctgttg catttgtggt ttgcctgaat tccactacga agaatgtccc      2100
     ttctgtgaat caaaaaacca aataagggaa aattgaagga ggttgttttc ccaatcgctc      2160
     aaaatcctcc acaatcgggt tccaagaatt taattgaatc atttcaaaac aaaattgcag      2220
     aaatggatac gcagcatcat aatcacacgt ctggtgatga ttatgatgaa tttactgatc      2280
     attttcacaa cgttaattct gtactagtga acctagatgg agacgcaagg tattttctaa      2340
     aatttaacat cctaggctta cagcttcatg gattattaga tagtggtagt aatgtaactc      2400
     tagttggtga acaatttggt aacataacca gctttcttca aatacaacca ctagagcgag      2460
     atataagcat ttcaagtgca agtggacatc caatgcaaat cttaggatat gttgacatcc      2520
     ctttcaatgt gaatgaaaca acaaaaatac ttccttgtct agttgtgcca gaacttgaaa      2580
     atagatgtat tctaggcatg gatttcttta aattgttcaa cattgaacta acatttaatg      2640
     aaactcatca ctcgcaagac ctcacggctt gcaatgttga gcaacgcaat gaaaattcat      2700
     caaatgtcca tgctctcact gctgaacaaa atcagatgtt agaagaagta aaaaaatcat      2760
     tcaaaatatc agaaccagac actcttgatg cttgcaacgt gatggaacat aatatagaac      2820
     tgacggacag taaagcaatc catttgaacc cgcatccttg gtctccgacc attcaaaaga      2880
     aagtcaatgt agaaattgac agacttttga agatggacat aatagaacct tcaaattcca      2940
     gctgggctct gcaagttgtt ccagtaacaa aggaaaatgg agacatgagg ctttgcttag      3000
     acgctcgcaa actgaacgcc aaaacagtac gcgacgcata tcctctagcc agctctatga      3060
     gaatcctcaa caatttgggc aaaaataaat atttttctgt aattgattta aaggaatcct      3120
     tcttacaagt aaaactagca gaaaattcaa aaaaattcac cagcttcaaa attttaggaa      3180
     gaggactctt ccattacaag cgtcttccat ttggccttat taacagcagt gcgacaatgt      3240
     ctcggattct ggacattgct ctgaaagaag gaaaatatga accatttatc ttttcatacc      3300
     tggatgatat cattattgca acaaataatt ttgaagacca catcaaatac ttaaaaatcg      3360
     tggccgaatg tcttagagaa gccaatcttt cggtaaattt acagaaatgt aaattttgcc      3420
     tcaaaaagat caaatactta ggctttatcc tttcggaaga tggttatcag ccgaatcctg      3480
     agagagtagc tgcgatctcc aagtttgcta gaccgcaaac tccaaaggag attcgcagat      3540
     tcttggggat ggcaggatac taccgcaatt tcataccgaa ttttagcggt atatcagccc      3600
     ctatctcaga cttgctgaaa ggcaagccca agaagataag gtggactgag aaagctgaaa      3660
     cggctttcaa acatctgaaa gaatgcttga tgtcagaacc tgtcctttca aatccagatt      3720
     ggtcaaagga gttcacagtg caaactgatg ctagtgatct agcgatagct ggaatcctta      3780
     cccaggaact agaaggaaag gagcatataa ttgcctattt ttcgagaaaa ttaacagctt      3840
     gcgagaaaaa gtatgggcca actgacaaag aaggcttggc tgctctcgaa gcaattgaac      3900
     attttcgttc ctacatcgaa ggttcacatt ttaccttagt cacggactgc tcagcgttga      3960
     ctttcatttg caactcgaag tggcgtccaa gctcacgact gtcccgttgg tcagttaagc      4020
     ttcaagagtt tgatatgacc attagacaca gaaaaggtcg agacaatata gtctgcgaca      4080
     ctcttagtcg tgctgtttat gccatatttg aagattcctc ttcagaatgg tacctggaac      4140
     tgaaaagaaa agttaatgaa aaccctgaaa attatccaaa ttttaaggtt gaaaacaacg      4200
     atttgtacaa attcatcact gctcgttcct tacatgagcc agccagattt gaatggaagt      4260
     tagttgtacc tccagacaaa atgcaggcac tagttgaacg agaacatgca atgctaatgc      4320
     atttgggtgt tgacaaaacc ttggagcgat tgaaacaaaa attttactgg cccaaaatga      4380
     aaatggatgt gaaaaaagtt ttatccaagt gcagtaagtg taaagaatcc aaatatccaa      4440
     ctgtgccaac cattcctccg atgggagagc agaaaagtgc aacacgtcct tttcaaatga      4500
     tagcacttga ctatttaagt ggatttgtca gaagtaaatc tgggaacact gacttattag      4560
     tatgtttgga cattttttcc aagtacgttc gcctgtttcc tgttaagaaa atcagcgtgg      4620
     acagcttgac aaaaatcatt gagactgaat ggtttttcaa actgggagtt cctcaaacat      4680
     tgatctcaga caatgcggta acatttttgg ggaacaagtt ccaagaattg ttaaagaagt      4740
     acaatgtcca tcattttaag aatgctcggc gtcactgtca gaacaatcca gtagagagag      4800
     tgaatagagt cattttggca tgcatcagga cttattgtca gtctgatcat cgtctttggg      4860
     atacgcaaat cgctcagatc gaatttgcta tcaataatac gaaacatttt tccacaggat      4920
     acactccgtt tttccttgtt catgggtatg aatcgatcgt agatggaagg gaccatcttc      4980
     aagataggca aacttctgat ccatcaatag atcaatttac tcaacgaaga gaagtggttg      5040
     tgggtccttt gtacgaagag gttgttagga ataataagaa gcaatttgag aaatataaga      5100
     aaaattacga tagccgacac aaagcattac ctccaacttt ttccataggg cagaaagtgt      5160
     acaaaaagca cttcaagctg tccaatgcag cggagcatta tgctgcgaag ctaggtccag      5220
     tgtacgtccc ttgcaagata attgccagga gaggggcaac ttcttatgaa ctggaagatg      5280
     agaatggcag gaatttaggt gttttcgcag ctcaagattt gatccccgag tgaatggtgt      5340
     attaagtgtt aattgtgtga attagtgtga atttgtgtga acagataatt atttgtagat      5400
     gagattttgt atggtgtgaa caatcgtatg cagtgaattt gaatcaatga atgttaggat      5460
     aaagatggcc atctaaagta tgaatgagag aaatgtttga attgagtgtt ttgtagtgtg      5520
     aaattaagtg taaacgagta aagtgtgtag tataaatgag tttaatacgt catattatga      5580
     gcagtcgcaa tagccaaaag atgccctctg tactctttag gcgaggtaag aacaaagtct      5640
     tgccttctca gtcataagat tacttttgta gtctcttgac gcgaaaatat tcaaagatgt      5700
     aggtattaaa atatgcagga aaaaaacgct taaaacgccg agttaagaaa aagtacgaat      5760
     ataagaatat cattaaaatc ctgtctagac agtcagaagc gatctgaaaa ttcttctgac      5820
     atggtaagaa agaatcgagc ataactaaat ctaaccagac tggtcgtgag gaaccttcag      5880
     tattctcatg actcgacagg attcaatcga aaatacaaac aaactctaaa gattgtgagc      5940
     cgttggagat tcttagcatc ccctcgatgc aggaatagta tttgtttttg atagcagatg      6000
     cttaattgaa cactataggt gtaacatact ccagcacagt cggtattaca acaacagttc      6060
     aaccctttat caactacaac aaccgcaaaa tccaaaccgt ttgaaccgac agtagtagta      6120
     aaatcatagt aaaaatagat catgcctctg tataagatct caaagtctga cccgacaaga      6180
     atgttctctc aaatggatta cggattacac ttgacaaaac tgaacacttg tttatctgga      6240
     cggcaattgg ctgtcgtgtg agtggatttg actgtggtga tttagattgc agtaatattg      6300
     agaaggtcat cgtagatgct ctccccatat tactgtctgg cgcgggggta t               6351
//
ID   Gypsy-423_AA-LTR repbase;    DNA;    INV; 1283 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-423_;
KW   Gypsy-423_AA-I; Gypsy-423_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1283
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1283
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2058-2058 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1283 BP; 329 A; 300 C; 290 G; 364 T; 0 other;
     tgtaacctgc tccttttact tgattgctgt ggtgagttat cattgctcgc gcacactggg        60
     tccctttgag tgcccatagc catgccaatc aatacaagag ttccggtcag atattaccat       120
     gtcaaaccat cacactgata caacactcac aacagaacat tatcatcgga tcgatcgtta       180
     tcaagtgtcg gtcgatcgcg ccgcatgcct cagatgtatg ctccgctggg cgcatgctgc       240
     tcttgccttc atactacgac caaatccaca tcacctaaac acaccttacc ataccacccg       300
     attctgccaa gaggcgactt gccataaaaa ccaggctccg gtatcaggaa ccctagtatc       360
     gttgcactca ttctctgata agagatcgat atcattctcg tgagtattat cacggccgat       420
     cgagtgtaag caccacacga ttgcacactg atagcacata ggatagtaac caataaaacc       480
     aatacaatag tgtagataac catcagttgt cggtttctcg tcaaacagac cagtccagtg       540
     ctatagtgca gtataatagt tcagtgtgca gttctacgat tcggttgcag agtctgaccg       600
     acgtgagtga agactccata gtaattatac ttgtgcttat caggtggttt cgttaatttt       660
     atagagcgta gttccacgat ggttaagttg atgcgctcga tggcttgccg cgagtaagcg       720
     caacattttt tgagatcggt aagatatcga taaaaactga atttcgaacg tgatcccaac       780
     aagtgcattc gttgcattct aatggctttt ttttgtatgc ctatattagg cctttcttgg       840
     atccagcaag agaatggtgg tgtgtcgtgg tatggtgaag tcaatggcgt gcagagcagc       900
     ggggttgccg gcatggcgcc ggtggtttcc cccccatctg tccggacagg aatgttgctt       960
     cgctgtcgcc gtgggataca cccgcacacg aacagtacac ccaacacaac attacatagg      1020
     ttaaggacca ttaggatagg ataagtagca gcaataaatg taagtacact gaatttcatc      1080
     actccatttt atttgtaagg ctgtaatttt tatcttgatt tgggatgact cgagtaagtc      1140
     agcgttttgg ttccgcttat ttaatgaacc agatttctgc tacgggttga gtatgtgggt      1200
     cgggggacca atgctcattg ctacccttct attctaccga attttgtctc caggtctcat      1260
     gcgccctctg cggagtggtg aca                                              1283
//
ID   Gypsy-424_AA-I repbase;    DNA;    INV; 4924 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-424_;
KW   Gypsy-424_AA-I; Gypsy-424_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4924
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4924
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4924 BP; 1663 A; 833 C; 1033 G; 1395 T; 0 other;
     agttggcgac gattggataa aaaactttgt ttctcgcgtc ctcgtgtgaa aaaagtgaag        60
     cagttatcct catccgagcg actagctgaa tacgcattcg acgtgttgat agtgtccaaa       120
     accaccgacg gagctgcttt tgtcgggaat cgcatcactg tatacctgcc attttctttg       180
     gatacaagca tcggaaacac caagagaaaa aaatcaccag caaaaccata ttcgataagg       240
     agcggacccc aaccaaaaat ataaagtccg accgactgta acagctgcgt ggtaaaaaaa       300
     aaaagtaaat cagcaaaagc taatatcgtt ggtggttgag acggtgtagc ggttgttctg       360
     gtgccaggaa agtggagcgg cataaagcaa ttctaagctc gatccgaagg ttctaggagc       420
     ccattcaaac aacagttgca gtagttccca agccaagaca ctcgcaccag atcgaaatca       480
     agacatcccg tggtgctgat tggtaattcg gttgatgctg atttgttacg atcgcataat       540
     tgtttgtttt ttgggccatt tgctattgaa acatggctgt taatgtgagc acaaccattg       600
     aaccctaccg caaaggaacc cctttcggcg agtgggttga acgcttagaa ttctattttt       660
     ctttcaataa tgtgacggcg gaagcaaaaa gagcctgctt tataacgctc agtggtccga       720
     taatttacca tgagctaaaa cttctttttc cgacgaataa tttgtccgag gtgtcttatg       780
     aagacatggt tgctaaactt cgaactaggt tggacaaaac cgagtctgac ctaattcaga       840
     ggttgaagtt caataaccgt acacagcaac cggatgagac cgtcgaagat tttgtcctct       900
     ccgtcaaatt gcaagcggag ttctgctcat ttggagattt caaagaactt gcaataaggg       960
     atcgtatatt agcaggagtc cgtgaaaagt ctcttaggga gcgattattg aatgaagata      1020
     agcttactct tgcaacggca gagaagataa tcgcaacctg ggaactagca gggaaaaatt      1080
     caaagaattt gaacaatgac gacgaccatt atggtcaaat agcttctttg actcatccgg      1140
     ctgctaaagt tggatccact atgggaaaac tattggcaac ttataatgca gcgaggaacg      1200
     atggtgaaag tggttctcat aggactccgg taaaggagag attaggatat aaaccatacg      1260
     taaggagata cgatgataga aggttcaagg ggcagagctg gagagaaacg gagaaatttc      1320
     gtccagggga atggaggcaa aagcccagct acgccgacat gacgtgtaat ttttgtggcg      1380
     caaaaggcca tattaaaagg aaatgtttta agctgaagaa catgcgccgc gaaactgtaa      1440
     acttagttga cgcttatgat ccagaaccaa gtgcggatga gcacatcgta aatctactaa      1500
     cacaaatgcg aactgatgac acggatagcg acgatggcga tacaggtgat ttaagttgca      1560
     tgatgatttc ttctataaat aagattagtg atccatgttt gattaaggtg atggtcgagg      1620
     gaaccccttt ggaaatggaa atagattgtg gctcttcagt gtcggtaatc ggcaaaaatc      1680
     aatatttttc tatttttaaa actccgctaa agcaatataa cagacaactt attgttgtaa      1740
     atggagaaaa gttgaaaatt gaaggtgaaa caactgtttc tgtggaattt aatggaatag      1800
     aagcaaattt aaagttattg gtattagact gcaaaaatcg ttttattccc ttgttgggca      1860
     ggacatggtt agatgtattc ttctccaaat ggagacaatt ttttttcaag tacgtttact      1920
     gttaataaaa tgattgagag gaataattta gcagaagaaa tcaaacaaaa gtataaagac      1980
     gtttttatta aagatttttc atcaccaatc aagggttttg aagccgaatt ggttcttaaa      2040
     tcagacgttc ccatttttaa aagggcatat gacgttccct atagactaag ggagaaagtt      2100
     atggtttatc tggataagtt agaaaaagag aaagttatta cgcccattaa gaccagtgaa      2160
     tgggcatctc cagtggttat agtgatgaaa aagaacaatg aaataagatt agtgattgat      2220
     tgcaaggtgt caataaacag agtaattgtc ccgaacacat accctcttcc tgttgctcaa      2280
     gatatatttg ccaaacttgc cggctgtaaa gtattttgcg ctttagatct ggaaggcgca      2340
     tatactcaat tggctttgaa tgaaagatcg aaacatttta tgacaatcaa tacaatcaag      2400
     ggtttatata catataacag acttcctcaa ggtgcttcgt caagtgcttc aatctttcag      2460
     catgtaatgg acgaagtatt agcgaatatg gaaaacgtac attgttattt agacgatgtc      2520
     cttatcgccg gaaagaatat tgaagaatgt aaatcaaaat tgaatctcgt tttggaaagg      2580
     ttgcgaaatg caaatatcaa ggttaattgg gaaaaatgta aattttttgt gaataagtta      2640
     gattttttag ggcatgtagt aagtgaggat gggctgttgc catgtcaaaa caaaatagca      2700
     actataaaaa atgcaaaggt acctagtaac acaaccgaac ttaaatcatt tttaggactt      2760
     ataaactact acaacaaatt cattcccaat ttgtcagcaa agctttatca tttatacaat      2820
     ttattgaaac atggtgtgag attcatttgg gatgcgaatt gtcataaggc ttttgaggat      2880
     agcaaaaaat gcttattaga aacgcatttt ttagaatttt atgaccctaa aaaaccgatt      2940
     gtggttgtgt cggatgcatc aggctatggt ctaggtggcg taatcgcaca tatcgtagat      3000
     ggagtagaaa aacctatttg ttttacctca ttctctttaa atcaggctca aaggaagtac      3060
     ccaatcctcc atttagaagc tttggcacta gtatgtacta ttaaaaagtt ccataaattt      3120
     ctgtatggac aaagttttac cgtatataca gatcacaaac cattggtagg gatttttgga      3180
     aagaaagggc agcactctat ttatgtgaca agattgcaaa gatatatttt agagctatca      3240
     atctacgaat tcaatattca atatcgacca tcaacaaaaa tgggaaatgc ggatttctgt      3300
     tcacgatttc cccttgagca attagtccca aatgaatatg atatagaaca tgtgagaagc      3360
     ataaacttca gtaacgattt tcccatagat tttaaattgg ttgcaaaggc gacaaaagat      3420
     gatgagtttt tgcaaaaaat tttgtcgttt atgcacaatg gatggccaga aaaacttgaa      3480
     acacgttttg ttgatgtctc ctccaatcaa attgatctag aaaccgtaga cgagtgcttg      3540
     ttataccaag atagagttat aataccacaa atacttcaag ctgcagttat gaaaatatta      3600
     catgctaacc atgctggcat ggttaagatg aaacagttag caagacgaac agtatattgg      3660
     ttcggaataa ataaagatat tgaaaaatat gtatcaagct gtgaagaatg caataggatg      3720
     gcgattgtca ataaaccaaa agaaaaatct cattggatcc ctaccaatag accatttagt      3780
     cgagtacacg ttgatttttt ttatttcaat catcacacgt ttctgctcat cgtagacagt      3840
     ttttctaaat ggttagaaat agaatggatg aaaaagggta ctgactgcag taaagttttg      3900
     aaaaaattgg tagagttttt tgctcgtttt ggactacctg acgttctagt ctccgatgga      3960
     ggtcctccct tcaattccta tgcatttgtt gactttttga cgaaacaggg cattaatgtg      4020
     ctgaaaagtc cgccatataa tccatctagt aatgggcagg cagaaaggct agctcgtacg      4080
     gtaaaagagg ttttgaagaa atacctattg gaacctgcca tgttacggtt agatttggag      4140
     gatcaaataa atctattctt gatcaattac agaaatagtt gtttgacgac ggatggagaa      4200
     tttccatcgg agaaaatatt ctcatataac cctaaaatac taattgacct cattaaccca      4260
     aagaagcaat tcaaaaacca attaaaacca ttgccaaatg atgaagaagt gttgattgat      4320
     atctcaaatg ctaataatca aacgcatgaa cccatagaca atctgaaggc tggtgatgtg      4380
     atttggtaca aaaatagcaa tccacatcac catgtcaggt ggactaaaag catctttcta      4440
     aaacgatttt ccaaaaatat cttccaggtg gaaactggaa acgtacgcct actggcccac      4500
     cgaaatcagc tgcgtctggt tactgaccca aatgaaatgc ttggtaaacc gactttgacg      4560
     ttgtctctga ccaactatac cgatgggttg cgtgttagca atgatgagga agaaccagaa      4620
     gggctgtcag agatgcaaca agcaacatca actaggattc ggaaacggaa gaggtctgaa      4680
     gcatccttga attctactcc cattgtacga cgatcaaaac gaaagcgtac ggcaaaggtc      4740
     gactcagatt ttcattatgg ataaatacac atgaagtgtt atcgaataat ataatagttg      4800
     ttaggcattt agtatcaaaa ttaattttaa cttgtctgaa ttatagttga aaagttttta      4860
     aagtttttat attaaaatgt ctgaaatatt atcaatcaag caaaatttat agagagggaa      4920
     gagt                                                                   4924
//
ID   Gypsy-424_AA-LTR repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   23-JAN-2019 (Rel. 25.07, Created)
DT   23-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-424_;
KW   Gypsy-424_AA-I; Gypsy-424_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-200
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-200
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2059-2059 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 200 BP; 65 A; 40 C; 32 G; 63 T; 0 other;
     tgagatatat gtcaaatggc attgcatgaa agagacatcg atagtcttct cttatattgt        60
     cttctcattg gaaggtttcg aaataataaa ataagctttg agccgtcatt cctatttcgg       120
     ctaccgacct gaaaacagtt attcttttgc cagtaccgag aaagatctac aaccccttaa       180
     cttcaaacta gtatataaca                                                   200
//
ID   Gypsy-425_AA-I repbase;    DNA;    INV; 6843 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-425_;
KW   Gypsy-425_AA-I; Gypsy-425_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6843
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6843
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6843 BP; 2143 A; 1374 C; 1597 G; 1729 T; 0 other;
     ttggcgatcc tgccaggctg ctgaaatttc agcagcaact aaatggtaat caattatccc        60
     tttaactttg aggaatcacc catcgcgtta acgaaaatcc caaaatttgt gttggttaaa       120
     gtgagcttca tctcagaata gtgcaagcta aaaatcaaaa tggccgctgt acctgtgttt       180
     tattgtgaac caaaatggct gctgaaataa tgattgaaga aattagatga aatttaatgt       240
     gccaatatta tataacatcg tttacgtgca atactcgcca gaatagttca cagcgttcgg       300
     tgactttgat atagatttta cttcgaaagt gtataagtga attattttcg taatattgat       360
     tcaaatgcag catcggactt cattgtgcct agtcaaagtt aatcgtttac atggtagtcg       420
     ctacaggtac tctggcaaat gttcgtgctt cgagatgacc gtgaattaaa ctgggaattt       480
     gcccacaaat attaaaattc tgctggcggc tcgaaatgac cgcggtatta tggttttaaa       540
     atcgacggag cgattcgaga tgactgcaaa cttaatttgg aatttgacta taaatattga       600
     atttctggtg gcggctcgag atgaccgcgg gattttggtt taaaattgga taaagcggtt       660
     cgagatgacc gccaacttaa tttggaattg gaacataaac attaaaattc tggtggcggc       720
     tcgagatgac cgcaggattc tggtttaaaa taggataaag cggttcgaga tgaccgcaaa       780
     ataaatattg gaattctggt agcgaacttg attggatttt aactatgaat attaaaattc       840
     tggaagcggc tggagatgac cgcaggattt ggtttcaaaa ttggataaag cggttcgaga       900
     tgaccgcgaa cttaatttgg aattggaaca taaacattga aattctggtg gcggctcgag       960
     atgaccgcag gattctggtt taaaattgga taaagcggtt cgagatgacc gcgaaataaa      1020
     tattggaata ctggtagcgg ctcgagatga ccgcaggatt cgcttttgaa agcaaataga      1080
     acggttcgag atgactgcca actagacatg gaactttgcc aaatatatat aaaaaaaata      1140
     gcttggaata actgcttaaa agcactgaaa attatcataa acaaaaatca gtattatatt      1200
     cacagaaaca gtatttataa tggaaaatat ttatctctgg tcttcaacag gtaaaatttt      1260
     cgtgtgcttg gaatcaaaat accgaaaatg tcgagtgacg gtaaatatgt acgggcaccc      1320
     gaattccaca gtgattcgga tgattccgat ggcggatggc ttccgcgcga gacgaatagt      1380
     ggtctggata aggatgacga taggtatctc tcgtcggata gcaatttgga ggtcgcattc      1440
     gatggtcaca ccggaataca gcaagagtca gagggaggca aacaacatga ccaaaatgca      1500
     gcggctatgc gagaggagaa tcggagttat ctgagagaaa tcaaggagct caaacattct      1560
     ttgaatcagt tggtggagaa gtttaattca agacaacccc ttgacgacgt cagtgtggac      1620
     gagcgcgatc atacttggag cagcgcgact gaaatcgcag gaccttctaa atgtactggc      1680
     aacatgcgat gggagcatat tccacctttc ccaaacgatg taccagcgaa ccaaatgtgg      1740
     gagcaatgga accgttttat tgatcgtttc caaatcgctg cttcgatttc caacgtcagc      1800
     gacccagtga agcgctctca gatactattc ctatctctgg gagacaaatt gcaaggaata      1860
     gttagagctg ccaggctccg cccgagtctt caggatccga actgctataa attatttgtg      1920
     gagaacatcg agcaatacct gctgtcgatg atagacatca ccgccgagca tgagaaattt      1980
     aacaacttga agcagggtgc ggatgaacca acgatggctt atcatgcacg gcttatggag      2040
     aatgtgcagc tctgtcgttt caagagaagt tatgaggatc gatttgtgcg gatgcagctc      2100
     ctgaagggaa tgcgcaacag agaactggcc aaactgcaat gatgttgaaa tatgacacga      2160
     ttttcatagt tcaggcggca actcgagaag aagcttatgt accaagagca tcgcaaaccg      2220
     aacattctga ggcgtatgct gtaacgcgag gtcagcacct ggtatccagt ggtagattgc      2280
     aacgaaagcg ccgtttcgac accaccgatg atgcacgtgg acaaggaaag atgcagcgat      2340
     ggaaaaatga gaacagtcaa cggggacaag gacgtcgctc tcgctgttcg agatgctatc      2400
     gtctatttca taagttcgga tcatgtcctg ctatcgatcg gaactgcaat tcatgtggcc      2460
     tgcgtggcca tttcgcagta gtctgccgga agaagaacgc caacagaatt caagctaaac      2520
     cggaaagcac acctgagtgg actgatgagc agagagataa gaaggtaaat aatgatgaga      2580
     tttgatccat cgttaattaa acgttcaatg cttaataaaa atgtaaacga tctaaaataa      2640
     aaagaatggg taaataaaag tgaaataagt taataataat tgtattttta atacttccag      2700
     caaataaatg ccctttcgct cacagatgca cttgtagagt gtcgactagg atcatcgtcc      2760
     ccgatccaat tcctaataga ctccggtgcg gatgtcaata ttgtgggtgg cgatgactgg      2820
     aacaagctag agcgcgaatc caaggcaggt tacgcgaaat tggaacccat tcaattatcg      2880
     gcaagtaacg aacttcgatc ttatgcttca tccaagcccg tctctatcaa gtgtggattt      2940
     aaagcagtta tcgaactggt tggtacccag aaaccgtcga tagtggctga tttctttgtt      3000
     gtaactgaag gtcgtcgttc tttgctgggt cgatctacag ccagtgatat gaagctacta      3060
     aaattaggtg tatctgtgaa caactgcgag gcagtaggag acaaaacatt cccaaaagta      3120
     ccgggggttc aagtaaaatt cagcattgac aggtctgttc cgccagttag aaacgcttat      3180
     tacaacgtac cagcggcttt ccgcgaaagc gcgagagcaa ggcttcagaa tatggaagag      3240
     cagggaataa tagagcgagt gacgactgca cctacatgga taagcggtat gtcagctgtt      3300
     gccaaaggca aagaagactt tcgcctagtg gtcaatatga gagccccgaa tcaagcaatc      3360
     aaacgagaat attttcgatt gcccttgtta gaggaaatga agattaagct tcacggagca      3420
     aaattctttt cgaagctcga tctgtcgaat gccttttacc atctggagct gcaccaagaa      3480
     tcacgtgatc tgaccacctt cttgtcggaa gccggtatgt atagattcac gcgtttgatg      3540
     ttcggagtga attgcgctcc ggagatcttt caaagagaaa tgacgcgcat tctcgaagga      3600
     atcgacaatc tcatagtgta catagatgat gtattgatgt ttgcggaaac attggacgat      3660
     ctccatagaa ccgtagacca agttctcgag aaattgaagg cgcataatct cacgataaat      3720
     accgacaaat gcgagtttga caaaacgcga attggattcc taggtcatga ccttgacgaa      3780
     tacggttttc atattgatga ggcgaaagtt agagacatcc acaaattcag acctcccaca      3840
     acggtttctg aactcaggag ttttctggga ttagcatcat tcatgagtcc gtacataaga      3900
     ggttttgcag aaactgcaag ccctttatgg gcgattacga gctcgaatgc gtggatgtgg      3960
     ggacccgagc aacaggaggc ttttgtaaag ctgaaggatc aaattgcaca ttgcacaaca      4020
     tcccttggat actttgcgga gaaccaacag acaattctct atacggacgc ttctccgaac      4080
     gcacttggcg cagtgctcgt tcagcaagaa gataataaaa ctccccgagt aattagcttt      4140
     gcgtccaagg ctctaacaac aacggaaaaa aggtacccac aaaaccagcg tgaagccttg      4200
     ggagcagttt gggcgataga acatttcgct tatttcttac tgggacgatc cttcacccta      4260
     cgtacagacg cacaaggttt cacatttatt ctgaacagat cacgagaaaa ctctaaacgg      4320
     gctctgaaca gagcggatgg ttgggctctc aggctcagcc cgtacaattt taaagtggag      4380
     tatattcgtg gttctgacaa catagccgat ccgtcgtcca ggttatatga aggcaaagat      4440
     ggtcccttca acgaagacgt tagtccgtgg gaaattgcgt gtctcgaggc aaaccaaatc      4500
     agtttcttaa cggaaaatga gataaaaatt gcaagcgatg tagatcagca actgcaggag      4560
     gtaatgaacg ccttgcaaac acaaatttgg cttccgcatt tgaaggattt tgaggtcctc      4620
     agtaaggagc tatacacgcg agacggcata ctagtcaagg caggttgcgc tgttattcca      4680
     aacagcttgc gaacaaaagc actttccgtt gcccacgaag gccatccatc aaaagccaaa      4740
     ttcaaaagta tcctgaggca acgagtatgg tggccgggaa tcagtaaaga tgcggaaaaa      4800
     tgggcggact catgtgcgac atgcgctata aatggaaaac ccgaacggac gactcccacg      4860
     aaacacgttc tcgcccccga ttcagtatgg cagaccatcg ccgtggattt taacggaccg      4920
     tatatcaaat tcggtggaat ctccatattg gtcatcgttg actatcggtc ccgctatata      4980
     attgcgaaac cagtcaaatc cacaagtttt gaaaacacaa gaaaggtact ggatgcagta      5040
     ttcgataagg aaggttttcc ggagtgcata aaatccgaca acggtccacc cttcaacggc      5100
     gaggaataca aacagtactg cttcgaacgc ggtattaacc taatattttc gacaccacta      5160
     cacccgcagc aaaacggatt agctgaaagt tgcatgaagc tagtcaacaa agcgatggca      5220
     gctgcatctt tcaattcatc aaactatatc gaagaattga atgcggcagt tcatgcgtat      5280
     aatgctgcag cccactccat aacacgtttg cctcccgagg aagtgatgat gagaaggaaa      5340
     ataaagcgag gacttccttt actttgccct ggcagggtat ctctcgatga cgaattgttg      5400
     aatgccagag atcacgacgc taaaactcga ggtaaggaac gagaagaccg tagacatgga      5460
     gctcgtgagt gccaagtgaa gcctggggat cgagtgatag tagagcgtct gaaccgaggt      5520
     aaagcggagt ccagattcga ccctcgcaaa tacaccgtta tggaagaaaa caacggcatg      5580
     ctagttttaa acgacgaaac tggtcaaata ctcaagagac atgtttcgca gactcgaaag      5640
     gccttcgact ggagagaatc agcggggaaa atcagggacc agctaaacgc cctcgactgg      5700
     acaccgagaa aacgagcagc gatgaattgg ttcgacgatc ggagagaaat agaaaatcgc      5760
     cagcgcactt gaaaagctac gttcgggtag cggaacatcc atagctgaaa ataaaaacaa      5820
     atgacgttgt ctttggaatc cctcaaacga aataaacgaa tgttgaactt acctcaatac      5880
     ctggaataaa tcaatccgaa ataagctttg aaactatttt tactgggaag caaacgtacc      5940
     tactaatcgg agctacagtt agaaaagcgt acacggagaa aatgaagtac tcaaaagtga      6000
     gttcattcca ctcaattccg ggggttcgtg cgttaaccta attttgagtt gatggggtag      6060
     aagttgtttt catttgcagc cattcgaaaa aatacctact ggctaagttc ttttcactca      6120
     accggcagat caaataactc aacttccagt actatgtcac ttactcaaat ttgaggtaac      6180
     gcacaaaggt tcggtttttg ggttgttttg ctcttcgctc tctgacaaca atagaaagag      6240
     cgaatgaaat agggagagaa aaataactca aaagtaagtt taaaaaaact caaatatgtg      6300
     ttttccgttt tctccgtgta tgtttttttt tcacatctaa ctccggttgc ccccagcttg      6360
     ctgcgatagt tcagaataat gttatgacgt ttacatcata agtgtcaaat agcgcgtgca      6420
     gaatccacct atacatcaaa atgcaaatcc ccttcagaaa tgattaaatc tccaacacgg      6480
     aaaaatatta attacacaaa tatgcacgaa aaacaaatcg atgttaaaaa tgactaattt      6540
     agctgtctga ttgatgatca atttaggtct gatgatatgt ttaggtaaat cgttttaagt      6600
     ttttacccgc gattaggtag ttctgctgtt ctgccgctcc cgctaaggta attttgcata      6660
     aagagagcga gatgttctga cttagtcgaa gaagtccgcg cgagaagtca aatctaggtc      6720
     gatttgtggt tccgtgaagt tgctcaactg aacccttcag aaacattctt gcactgaaat      6780
     cgaaaaaggc ccattttttt taaagcctta ttattcttat gagtttttga agtggagggg      6840
     aaa                                                                    6843
//
ID   Gypsy-425_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-425_;
KW   Gypsy-425_AA-I; Gypsy-425_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-229
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2060-2060 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 229 BP; 59 A; 58 C; 53 G; 59 T; 0 other;
     tgtgtggtac aacaaaattg agtcgacaac actgccggta acggctcgta acgcgctcta        60
     cctcgcttgc atatccttga tgagttacca tcgccatact tgcatacacg ttcatgcaag       120
     gccatgcaca gcggctttca gtgtttggca gtgaacgagg taagacccca tcatacgaag       180
     tacagcgcgt tgggtgattc cttagtttct tagacccgaa aattgtaca                   229
//
ID   Gypsy-426_AA-I repbase;    DNA;    INV; 4705 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-426_;
KW   Gypsy-426_AA-I; Gypsy-426_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4705
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4705
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2047-2047 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4705 BP; 1480 A; 1009 C; 1079 G; 1136 T; 1 other;
     tattctggcg acgagaagaa cctacgctga ttcctgccaa gcggaataat gtaagtaaga        60
     aaaatctgaa aacttttgca aaagttggga catcagagag aaaattttca aacaaatagt       120
     tgccatagcg acggtttgaa catgctgtgt cgggctgtga aaagttcgcc ttagaaggga       180
     acatgcttca atgaaaagtt cgccttagaa ggggacttgc cttagcggcg gatacgatcc       240
     gtcgggtcag gctgtgcaaa gaaaagttca ccttagaagg gaactcgttc aaagaaaagt       300
     tcgccttaga agggaacttg tttcaaagaa aagtttgcct tagaaggaaa cttgccttag       360
     cggcggatac gatccgtcgg gtcaggctgt aaaaaagggt tcgccttaga agggaacttg       420
     actttgctac ggaagcgaat ggagaataag ctataattta ctataacatt tcactaagat       480
     ctcccaaagt ttgtaaaagt atttttgaaa tagtgacgcg atcccataac attttgtctg       540
     taattcactt aacgcagatg gaagaccagt tgttcaaact accaccgttc gaatgcgaca       600
     atgttcctat aacggagttg cgccagtcat ggttcgacta caagagacag ttcgaataca       660
     tcgccgctgc aatgggcaag aagaagaaga aaaaactcaa gagtatcttt ctagcggttg       720
     ctggtcgtca gcttcaacgt atatacgaaa gtttgccgga ggacaaccgt gagactgccg       780
     atggtgagga tgatttcgac aacgtcatgc ggcggttgga caactacttc gctccaaaac       840
     gacacgatac ctttgagcga cactctttct ggacgcagaa acctatcgcc ggagaaactc       900
     tggacaaatt cttgctccgc gccaaagttt tggcaacgaa gtgtcaattt gggaccaccg       960
     aaaaagaaag tcgagatgca gccgtgattg acaagattgt tatgcttgca ccaccggaac      1020
     tacgacgcaa gatactggag aagcctaaca taaacctgga cgatctgacg aatctggtca      1080
     acactcattt atctatccaa catcagattc gtgagttgaa tcaacacgca ggaaacagct      1140
     tacaaccgac tcgtagcagt gcttttgtta acaagatatc accgaagaat gaagacaaat      1200
     caggatggaa gcagaatcat caagctaccg agtgtggcag gtgtggcaac agactccaca      1260
     agcccgaaga gcactgtccg gcaaagaacg ttaagtgtca caattgtggt tatatcggac      1320
     acttcgccaa aaagtgccga ttcgattcca ataaagggaa aaccgaacaa ccacgatcaa      1380
     tgaagcgcaa atcttctgat catcaagatc atcaccgtta caaaatgcca agagtcaacg      1440
     ccgttgaagc caacgatttt cccgaaccac gtgctgtgaa agatgaagct gcatctcaga      1500
     aatcattcgt atatgcaatt agcgataacc acgacgagat ggtctggtgc aaagttggcg      1560
     gtatactcat cgaaatgatg atcgactcgg gtagtaaata taatattatc gatgaattga      1620
     catggcacta catgcagaac aggaatgctt tcgtgaagaa tgtgcgtcca tcgtccaaac      1680
     agttatcggc ttatgcacaa caaaaaccct tggtaatcag gtgtaccttc gatgccgaaa      1740
     tagcggttgt cgagggtggc gaactcagtt ttaacgccac tttttacgtt gtaaaatgtg      1800
     gagaacagaa tctactgggt agagacacag cgaagcagtt gggagtactg ttgattggct      1860
     tgccaagcgt catcagctcg gagaatatcc aacacgtatc agataatggt attgataagt      1920
     tccctgtaat taaaggtatc aattagtatt tatttaataa agacgttgtc taacttctcc      1980
     atacacacag gcgtcaaaat acgtataaat atcgatgaca ctgtcacccc cgttgcgcag      2040
     cacgttcgcc gagtcccaat agctcttcgt caacaagtcg aagatcaact cgataagctt      2100
     ttgaaattgg gaatcatcga aagggttaac ggtcctagcc catgggtatc tcctgttgta      2160
     atagttatca aagacaacgg tgatgtacga ctatgtattg acatgcgtcg tgcgaacact      2220
     gcaatacgac gagaatacca tatgatacct actctagatg atctattatc gaggctcaac      2280
     ggagctaaat ggttttcccg gctcgatatt aaagatgctt accaccaagt agaactgcac      2340
     gagtcgagcc gattcatcac gacattcatt acgcatcttg gcatgttccg ttacaccaga      2400
     ttaatgtttg gaatatgcag tgcgtccgag cattttcaga gaattgtcga gcaactactg      2460
     agcaattgtc ctaactcctt caattatcaa gacgatattt ttattcatgg gaaaacggaa      2520
     gctgagcacg acgctgcctt acagaacgtt ttacgcacgc tggaagacca taatgtcgta      2580
     ctaaatacca agaagtgtag attcaaagta acggagacgg agtttctggg tcacgacatt      2640
     tcccaacaag gcgtgaaacc aacgcacgac aaaataatgg cagtgcaaca gttcagatca      2700
     cccagatcag cggaggaagt tcgcagtttt ctaggacttg ttggttacgt aggtagattt      2760
     atccccgact tggctactaa aacattcgat cttcgtcaac taactgttac cggacagaga      2820
     ttcgtttgga caacgaagca tgatgttgca ttcgacaatc taaaacgagc agtatgttcc      2880
     gctcccatac tgggattctt cgatgacaag cgacggacaa gagtaatagc agatgcgtca      2940
     cccgtgggtt tgggagcagt tctaatccag tttgaagacg aatgcgatga taagccaatt      3000
     gtgatttcat atgccagcaa gagtctgtct cctacagagc gcaggtactg ccaaacagag      3060
     aaggaagccc ttgctattgt atggagtgtt gaaaaatttc gtttgtatct gcttggaaga      3120
     gactttgaac tcgaaaccga tcaccgtccc ttaaccgcaa ttttcaagcc aacctcacag      3180
     ccccccgggc gtatagaaag gtgggtactt agactgcaac cattcaaatt caggatcata      3240
     tataggcctg gaaaactaaa cgttgcagac cctctttctc ggctttcttc atcatcggat      3300
     aatcaagaaa ttgataattg cgatgatcag atttacatcc acgcgatcac ggactcagtt      3360
     gctgtcgatg tttcagaaat caaaagtgcg atagatgaag accccgaatt agttattgtt      3420
     aaagacgctt tgttaacagc agwctggacg gatgaagcag ttagaaatgg tgctaagaag      3480
     tacatccctt ttcaaaatga cctcgcactc ctcgaaggct acgtaatccg tggatgcagg      3540
     attgtcgttc ccagaagctt acgcacaaga atgctgcagc tcgctcacga aggacatcca      3600
     ggtgagacat tgatgatatc gcgccttcga gacagagttt ggtggcctgg aatggatgag      3660
     gatgcaagaa aaacagttaa aagctgtgaa ggatgccgtc tggttagtag accatccgca      3720
     cctgaaccaa tgcaacgacg tgcaatgccg aatgaaccct gggtggatgt agcaatggac      3780
     tttctaggac cattaccatc aaatgaatac ctgctggtga ttgtcgatta ttatagtcga      3840
     tacaaggaag tgtgcactat gaagcgaata acatcagagg aaacgataaa acaaatcgaa      3900
     ccaatcttcg tacggctagg ctacccaagg acaatcactc tagacaacgg tcggcagttt      3960
     atcagcacag agtttgaaga ctattgccgc tcaagaaata taacgcttaa tcatacagcc      4020
     ccatattggc cacaagcaaa tggcgaggtt gagagacaaa acagttctct ccttaagcga      4080
     cttaaaataa gtcattcaat ggaccgggat tggaaaacgg atttactcca gtacctaatg      4140
     atgtataaca ccactgcaca ttcagttact ggaaaggcac cttccgtttt attgcaaaat      4200
     cgtttgatcc ggtctaaaat tccgtcaata ggtgatatag aaacggcccc accagtcagt      4260
     tctgaagcca gggaccgtga tactattcta aaatatagag gaaaagaaag ggaagatata      4320
     agacgacatg caaagccatc agatatacgc gaaggagaca acgttttgtt gaagaattta      4380
     gtatcaacag gaaaacttac tccaacattt ggtagaacag agtacaacgt catggagaag      4440
     aaaggaaatc gtgtcaaagt acttgatccc ttgtccggcg gtgtcctaga aagaaacacg      4500
     gcacatgtaa aaaagatacc caatttgcaa acagattcta tcgaagaggc gacatcaagc      4560
     agcgttgatg atgtgactag caacccagta cccgatcgtg aactagagtt ggtacagccc      4620
     tctcgtcctt cccgttcgat gtcgcggccg gcatggcagc aagattatat tgttaatcaa      4680
     ccgtgatctg gataaaaagg ggaga                                            4705
//
ID   Gypsy-426_AA-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-426_;
KW   Gypsy-426_AA-I; Gypsy-426_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-166
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-166
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2061-2061 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 166 BP; 44 A; 28 C; 39 G; 55 T; 0 other;
     tgtggtgaat tatgaactga gcccagcagg cgtggcgatg gggattcatt cgagaaccat        60
     agtcagttgt gtgtggacgt ttatctcctt tgaagtgcgc gaattctgta atcgaataaa       120
     tcttattata ccaacttgtt atcgttattt tgtgtaaaat accaca                      166
//
ID   Gypsy-427_AA-I repbase;    DNA;    INV; 3904 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-427_;
KW   Gypsy-427_AA-I; Gypsy-427_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3904
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3904
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3904 BP; 1108 A; 925 C; 906 G; 965 T; 0 other;
     agtggtgacc tccgacggtt gtttccggaa aaaatcgaaa cgattacgac gcgaaaagaa        60
     aacaaaatgg cgactcccgc tgcaaatcca gagccagccg ctacagctgc cgtcgcagtg       120
     aaattacccg acttctggaa atcggatcct actatgtggt tcgcacaagc cgaggcgcaa       180
     ttcgcattgg ctggcgtaac acaagacgtg acaaaattcc accatatcgt cgccaagatt       240
     gatcaatcgg tgatctgtca tgtcgcggat cttgtcaagg aaccacccgc cgatggtaaa       300
     tacaacgcca tcaaaacacg attgatttca cgattcgagc tcagtccgca atcaaaattg       360
     gaaaaactac taggagcctg cgacctgggt gatttgcggc ccacccacct gctggccaag       420
     atgcaggaat tgtcttctgg actgaacgtg gacgatgcat tcctgaaaat gctttttctc       480
     caaaggcttc cggcaaacat ccggacagtt ttgagcatca acgaaagcag tctcgctaat       540
     atcgctgaaa tgggggacaa gatgattgac ctcgttccac acgtcgttaa agaagttaaa       600
     gtgatcccgg catcagcaca tgcagagctg tactctcagg aagacctcgc tggacaaatt       660
     gctgcactaa ctgcagaaat acgccgccta aaatctggcc cggaaagatc acgttcccgt       720
     tcagcatctc gtcgccgaag tgaaaacaca actgacatct gctggtatca tcgtaagtac       780
     ggtggccaag ctgaacgctg ccgtagcccc tgtaagtatc aacagccaaa aaactagtat       840
     gccgcccacc agaaacgtgt gaagtgggcg caggacaaca aagccgtcgg ctggttatat       900
     acgataggac gtcaaatgtg cggtttttgg tggatactgg atccgacgtg tcaataatac       960
     cagcatcaag gaaggataaa ttaaacggtc cgtcaccttt tcaactacat gctgcgaacg      1020
     gatcgaaaat ttgcacctac ggaagtcgtt tcatcactac ggacctcggt ttacgtcgca      1080
     gattttcttg gaattttctt cttgcggatg tcactacagc gatcataggc gccgattttc      1140
     tggcaaattt tggtgtcctc attgacctcg caaaccgcca actgattgat gggcgtacga      1200
     agctacattc tgtcggtggg tttataaatg caaaattgca tagcgtaact actgttgatc      1260
     agtgtcatcc gttccatgat cttcttgcgg aatttcgaga aatcacgatg cctccaacaa      1320
     tgcgaacagc agtacatcat gaggtaaccc accatatcca aacaaaaggt ccgcctaccg      1380
     catgcaagtc acgtcgaatg gcacccgaca agctgaaggc tgcaaggaag gagttcgaaa      1440
     ctatgatgga gctcggaatt tgtcgaccat ccaaaagcag ttgggcaagt ccgttgcatt      1500
     gtgtcccgaa gaaaaatggt gagtggcgct ttgtggggga ttaccgtagt cttaatcggg      1560
     ttacaattcc agaccgttat cccgtcccac acatccacga tcttctgaac aacttcctgg      1620
     gaaagcacat attcacaaca ttggatatgg ttcgagcgta tcatcacgtc ccagtcgaag      1680
     actcggatat agaaaaaact gcggtaatca cgcctttcgg gctgtacgag ttcacgagga      1740
     tgcagtttgg gttatgtaac gctagccaaa cgtttcaacg ttttatgaat cgcattttcg      1800
     gagatcttga ttttgttgtt gtatttgtcg acgacatatg cattgcatct gcatcggagg      1860
     aagagcatcg ggaacatata cgtacagtat tcgagcgcct ccagcaaaac ggactggttt      1920
     tgaatttgac taagtgcaaa tttgcccaaa ccgaggtaga cttcctcggt tatcgtgttt      1980
     gtagcgatgg aattaaacct gaccccgaac gcgtccgtgc cgtacttcag tataagcaac      2040
     ctgaaaccgt taaggagctt cggcgcttct tggctctggt aaacggttat aaacgtttca      2100
     tatcccgagc agcagcaatt caaaaaccct tacaggagat gattcctggt aatcgcagga      2160
     acgatatgcg taaattatgt tggaactctg cgactgaacg agcttttctg gagtgcaaaa      2220
     acagcctggc aaatacagct ttactgcagt atccagatgc gtcaaaaacg ctgggcttaa      2280
     tggtcgacgc ctcggatgtt gcagcaggag cggttctaca gcagctcgtg aatggtgttt      2340
     ggaaacctct gggattcttt tctcaaaaat tttcaccctc gcaaaagaag tactccgtgt      2400
     ttggccgtga actaacagcg atgaagcttg ccgttaagta tttccggtat ctcgtagaag      2460
     gtagaaactt cgttatctac acagatcatc gcccgctaac gtatgctcta aattccaact      2520
     caaatcacct accgcacgaa gaacgttacc tggaatacat atcaagtttt acaaaagaca      2580
     ttcggcacat cagtggtaaa aacaattctg cagcggatgc actatctagg gtagatgcag      2640
     ttgttgttcc atccggaata aactttgcgt caattgctgc ttcacaaaaa gacgacgatg      2700
     aactaaaccg acttctaaat gaaaagaaaa catctctaaa tcttgagttg aaacagactg      2760
     atcatttgga tcaacctgtc tactgcgatg tgacaaacta tcgagttaga ccattcgtga      2820
     caaagcaaca taggcagcac gttatgaaaa cgcttcacag tctgtcgcat ccgggtgttc      2880
     gtgctacgag gaagttggta tcagcaagat ttgtttggcc atctatcaat cgagatgtag      2940
     gtctcttcgt caaatcgtgc accgaatgcc aacgatcaaa aattcagcgg catactgtga      3000
     ccccattgaa ggattttaat ctgcccaatg gccgcttcaa gcacgtgcac atcgacctag      3060
     ttggtccact gccaacttca ggaggaaaca aatacctttt gacaatggtg gatcggtaca      3120
     gtcgctggcc agaagcagtt cctctaccag acatgcttgc tgagactgtc gcgaaagcgt      3180
     tctgcagtgt ttggatttcc cgtttcggtg taccggagat cattagcacc gatcaaggta      3240
     ggcaattcga atctgagttg ttcttagaaa tgactcgact tctaggaaca catcgcgttc      3300
     gaacaacagc ctatcaccct cagtcgaacg ggttagtcga aaggttccat agaactctca      3360
     aatcagccgt aatgtgcgta gatcctaaac actggtgtga tcgattgccg ttaatcctcc      3420
     tgggtttgcg ttcagccgta cgagaagata tcaactgttc ggtagcagag atgatttatg      3480
     gacaacagct tcgtataccg ggagaattct acgatttctc ttctaaggac atcgatcgga      3540
     cggaatttgt aaaatcgtta cgaaatatga tgcagcaagt tggtcctatc agcaacagta      3600
     atcatgctaa acgtcacgtt ttcatacccg acgatttgaa gacttgcaag cacgtatttg      3660
     ttcgagtcga cacagtcaag cgtccactac agcatccata tgacggtcca tatgaagtcc      3720
     ttgagcggag cgacaaatcg gtcctggtgt tcatgaaggg gaagaaacaa agaatctcgt      3780
     tggatcgcat caaaccagca tacatttaca actgtggatt ggaaaacgac gaggaatcca      3840
     acaaaaccaa agttacgcca tcgggtcata gggtccgatt tctggcgtaa ctggaagggg      3900
     actc                                                                   3904
//
ID   Gypsy-427_AA-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-427_;
KW   Gypsy-427_AA-I; Gypsy-427_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-199
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-199
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2062-2062 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 199 BP; 60 A; 49 C; 41 G; 49 T; 0 other;
     tgtggcaaca ctgccaccca acgacaaccg cagcttacct agagagaaag agcagtaagt        60
     gagaagcttt cgcgagtatc gcatcgaatt ctgtttgaat aaaagacaag tagtttgtaa       120
     agtaaacgtc gcgtatattt tattcgttat ccgttccgta gaaccgcaat ccgtccgctc       180
     cgtgacaaat cttcccaca                                                    199
//
ID   Gypsy-428_AA-I repbase;    DNA;    INV; 6777 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-428_;
KW   Gypsy-428_AA-I; Gypsy-428_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6777
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6777
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6777 BP; 2693 A; 1268 C; 1054 G; 1762 T; 0 other;
     tggcataccg tgacaggtta tctactaact tcaaaagtag accctgcaag tcagaaaaag        60
     tgcgtgaatt atacccgatc gcgatgtgca tgtaaagtta aaaaaaagag tacttagtga       120
     cttggaaaaa cagatgcgtg taaaagtgat gtgcgaaaat taagtgaaac gcatcaaaag       180
     tagttcattt tttctctaat gagataaaac aaaatagaaa aacaggacac tacgtcgacc       240
     agttgaaaaa taattcaaat ccgtcaaaaa ttctcgttca acatgggctg gtttggctca       300
     gacgagatag agaacaattt taacacaagt gctcatgata ctttacaaac tgtcgcgcta       360
     tcagtgatag cgctagtggt actgatttat ggcattttgc ggattgttaa taaccaccaa       420
     aaacgccaag cggagcgcgt agccaatttg gcagtgcgtt tgaataaagt gtgataaata       480
     attaagagaa aaacagtgta cctgtgaaat aaagaacagt tgaacagtta aaaatggggg       540
     gaaaattaca agaacagtta gacataataa aagcacgagt gctagtaaaa cggaagacca       600
     ggattgagcc tgaggaagaa aagtgcaacc taaattgtgt attcatgtct ttcaaactac       660
     atgaaatata ccattcgatc aacaaaaaca aggacatata aagacagcaa gtgacatggc       720
     agcaaaaagt gcaatcttaa taacgttaaa acggcttgag caagccagaa aaacgaacat       780
     tccgattatc gtggaaacaa agcaaagtag tgtaaaacaa cttataaaga cactacttga       840
     aaaaaagaag gttaaacaaa ttaagatata caaaaactca tgccttctga aagtactaaa       900
     cgaagtaaaa aaaaatagag ggactttacg agactattcc agtaaagaaa gttgatatac       960
     cagagtggag tgccaagtta ctcaaagaca aagaaggaaa tttattatta acaacaacaa      1020
     aaggagtgat aacgcaccaa gatgcatgga aacacagaat aggaggagag attcttggtt      1080
     ttgtccaata aaaccaaaag cagcagtgca ctctgacgta agttgaggag agcgcctccc      1140
     cgtcagccat cttataccaa gcagtaacag cagcactatg aagtgagcgt tgaggagagc      1200
     gcctccgcca caataaggta tttacgtata aaaaaaaaaa aaaaaatata tatatatata      1260
     tatataatca ttttcttaaa atttataagc ctttaacatc gaaccttgaa tatgaggtta      1320
     tggacattga aagtaaaatt gaagagcaaa ttctcatatt gacaaaattg aaagctaatt      1380
     ttactaaaaa tcccaataga aactataaac gaataacttt agtaaaacat ttggatttag      1440
     caaaagaggt atacacttac attacaaacc ttttagccga atttgaaaat aatctacaac      1500
     caaaccaatt agaatttttc ataaaactta gtagaacact atataatgaa ctatttgata      1560
     caataaatag taaacttaaa aacataaagg ataatattaa atttaaaagt gctgttaatt      1620
     gcattttgtt ttgtataaga atcaataatt cagtgaaaat ggcgaatatt atagaaatta      1680
     taagaacaat atcctcatta gtcccatcat acgatggaag acaagataaa ttagtaaacg      1740
     tgctttcagc tcttaatgcg tgcaaagcgt taataaatga taacaccaaa gatgcagcca      1800
     tccaaactat tttatccaaa ttggaaggca aagcgcgagc tgcagtgacc gaaactcctg      1860
     aaagcattga tgagattatc aataatttga aaacaaaatg tagttccact acatctccta      1920
     atactttatt ggcaaaatta aacgccacca aacaaagaga acatttcagc aaatttgttg      1980
     atgaaattga gagactaact cttgatttag aaaaagtata tctagaggaa aaagttcccc      2040
     tggacacagc ttcaaagctg gcaacaaatg ccggtgtcaa agcactcatt aatggcataa      2100
     aaaacgagga aacaaaatta ttactcaagg caggtcagtt tgacacgttg tcaaaggcaa      2160
     tagaaagagc ctcagaaaac gaagcggaaa aaccgtctag tagttcagcc aatgtctacc      2220
     aatacacaaa gaaaaatgac taccgaacca atcatggacg tggttcatct cgtcagactt      2280
     acaacaatta tcagtatcaa aacaaccgta ggaactcaca atcctaccgt ggaaattctc      2340
     aaaactaccg tggaaatttc catcaaacta gaggaaattt ccaaagtaac cgcggaggtt      2400
     actctcgatt taatcagaga aatcatagag gaagaggtta taacaataat ttcaatcctg      2460
     gaccaagtgg gcgtggtaga aatgtttatt acatgatctc ggaaaaccca caagtccccc      2520
     aacagccagt tgggggtcaa caaactatcc ctgccgcaac ccagcagcaa cctcaacaac      2580
     aacaacaatt ccaaatagca ttagcgaaca tgcaacgcca aagataaaag gtatttttaa      2640
     catctcaacc gctctttcca attttgtgat tttgaaaact gaatctacac attctgaatg      2700
     tacattccta gtagattcag gagctgaaat ttcagtgttg aaacccacaa aactgaaaca      2760
     ggcgataaat attgacactc aacaaatatg ttcaattaca ggaatccaac accaagctct      2820
     cgatacactt ggaacaatcc gtgaacattt acatttacct tatgaatgca cagtaactca      2880
     taaattccat attattcctg aagatctacc aatacccacc gacggaattt taggacgaga      2940
     ctttttgtct aaatttcgat gcgttattga ctatgacaca tggactcttt caacctttat      3000
     aaattcacaa ttaattgaaa tccctattca agataaacta aatgatgata ttttgatacc      3060
     accccgttgc gaagtattta ggaaaatttc tattccaaat tttcatcaag actacgttat      3120
     tttatcaaaa gagatacaac ctggagtatt ttgcgcaaac tcaataataa atgctaataa      3180
     ctctcttgta aaattaatca atactacaaa ccataccgtc aaaattcgtg aaaatttgat      3240
     agaccgtctt aaacccctcg aaaactttaa catttttaca ttcaatgaaa cgatccagtc      3300
     aaatcgaaaa gaaaaatgta tctcagaact caacctaaac gccacacctt gctacgtgaa      3360
     aaacaaatta aaagacttat gtaccaaata caacgacata tttgcattaa agaacgacat      3420
     attgacatgt aataattttt ataagcagac aattattttg aataaccaga caccagttta      3480
     cataaaaaac tatagaatac cggaagttca caaaacagaa attgacaaac atgttgataa      3540
     aatgttgact gaacaaatta ttcaaccatc aatatctcca tacaattccc ctgttttgct      3600
     tgtccctaag aagtctacta acaatgacaa aaaatggcgt ctggtggtag atttcagaca      3660
     gcttaataaa aaagtaatag cagacaagtt tcccctacca cgaattgacg atatccttga      3720
     ccaactaggc cgagccaaat atttttctac gctcgaccta atgtcaggat ttcaccaaat      3780
     cgagttagaa gaacaatcta aacaatacac agctttctca acaaactcag gtcactacga      3840
     gttcaacaga ctaccatttg ggttaaacat ttcacccaac agttttcaac gcatgatgac      3900
     aatagccctt agtggactac cgccagaatg cgcattttta tatatcgatg acataattgt      3960
     cgtcggttgc tctgtaaatc accatctaga taatttggaa aaagtttttc aaaaattaag      4020
     aaactataac ctgaaattaa atcccgccaa atgtagattt ttttgttcag acgtcaccta      4080
     tataggacat catatctcag ctcaaggaat acaacccgac aaatcaaaat attcaagtat      4140
     cctaaattat ccacaaccac aaaatgtaga cgacgttagg agattcgttg cattttgtaa      4200
     ttactataga agatttgttc cgtatttttc agataaagca gcacctttaa atgctctcct      4260
     taagaaaaaa gctaatttta tttggtctga tgaatgtcaa aattcttttg aaaccttaaa      4320
     aaacgaactt ttaagcccta gaatacttca atttccagat tttaaaaaaa catttattct      4380
     cagcacagac gcttcaaaaa tagcttgcgg tgctgtatta gaacaagaac ataacggcat      4440
     aaggttaccc atagcctacg ccagtaaaaa atttacaaag ggagaaagca ataaatctac      4500
     aatagaacaa gaactaactg tcatacattg ggcaatatca cattttagac cctaccttta      4560
     tggtcgaaaa ttcactgtaa aaactgacca taatccccta gtacacctgt tttccatgaa      4620
     ggatccaact tcaaaattga cacgaatgcg acttgattta gaggaattca actttgatat      4680
     cgaatacgta aaaggaagag agaatgttgg cgccgacgct ctttcccgta tagaaatcaa      4740
     ttctgaagac ctgaagaaca tgttgatctt gcctatgcag acaagatcga tgacccgaac      4800
     agcaatacaa aacccaatta acgaatctac agcttctgag attgatcacc ttaaggctta      4860
     cgattcaatc aacaatatgg acgctttcaa tctaccaaaa gtcgtttttg aaccaaaact      4920
     cgaccatttt aagataataa ttaaaaataa aaacctgaaa ggaatccttg ctcaaacgca      4980
     actattccat aataaaggaa caatttattt tgaagaatgc atacaaatga tagatgaaat      5040
     ggccaagaca atgaagataa agaaaattgc gatcaatgta atggatccaa tatttaatta      5100
     tatttcccgg gaaaatttta aagaagtatg caacgaaatt ttaaatgacg tcataattat      5160
     cctatacaca ccagcaaagg tggtgaaaga cacaaatgaa ataaatcaat tgataatgga      5220
     aaaccacgat accccttcgg gaggacacgt aggtataaac aaattactac aaaaattaag      5280
     aagaaattat tattggcaca atatgaaaga cagcataacc aaatatgtta aaaactgtat      5340
     ttcatgtaga caaaataaac ataaaattaa aactaagtgt tggtagcaaa gctcaaagct      5400
     ttgagccaac ccttttccag tagagaagct aggcaaaata caggacgctt cgatgcttac      5460
     tgactttaaa atggcttgct caattttcac cacctaatta aattttcaat cttgtcgctc      5520
     ccttgcgacg cctatgcacc tattcgtttc catcatttgc ttctatagac tccctttacc      5580
     tttgagtcgc atgaccgata cagccataaa acaaaaataa tttaaaacaa tcacggtcga      5640
     aaccttctcc tattaaaact aaggaaattt ttgaaaaaac ttcaacacca ataaaaccat      5700
     ttgaactcat ttcaattgac acagtagatc caataacgag atcaacaaaa ggaaatcgtt      5760
     acgcattgac aatacaatgt gatttaacga aatatatcat aacagtacca atagtagata      5820
     aacaagctgg tactttagca aaagcactag ttgaaaatct tattttaatt tatggatgcc      5880
     ccaaaataat taaatccgat atgggcaccg aatatagaaa cgaagttttc caacaattat      5940
     gcaccattct atccatcaac caaaaatttg caacagctta tcatccagaa accataggag      6000
     ctcacgaacg aagtcatcgt tgtttaaatg aatatcttag gcaattcatc aatgaacagc      6060
     atgatgactg ggactcatgg ttaccatttt ttacattttt ctataataca acgccacaca      6120
     ctgaacataa ttttacaccg tttgaacttg tttttggttc acaagcaaat tacccaacac      6180
     aactgaaagt agaatctcaa attggtccga tttataatta cgaatcttat cacaaagaac      6240
     taaaatataa actacaacta gcagcccaaa aagcaaaatt tctgttagac aaatcaaaaa      6300
     gcaaaagaat cctaaagcaa tcagagaaat caaacccaat aaatattcaa ataggagacc      6360
     aggtatggct acagaaagaa aaccgtagga aattagattc ggtatacaca ggaccattta      6420
     caattatcca aatacaacat ccaaatgtaa cattaaaaaa tcaaataaca agtgaaatac      6480
     aaacagtaca caaaaacaga attgtaaatt aacatttcaa ccaagcataa tacttgagac      6540
     aaataaccga gcctaatctc taaaaaaata agaaatgaaa aaaaaaaata agtgaaaaga      6600
     gagataggtc aaaagtctaa ccttgtgtta agacgtgaga aattcggtac ctaatattaa      6660
     gataacaaaa aaaaatagaa aattttaatg ttacacagag acaactggag actgacaacc      6720
     attgaataat tgcatttcat tttattccat ttcattattc atctaaaaag gggaagt         6777
//
ID   Gypsy-428_AA-LTR repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-428_;
KW   Gypsy-428_AA-I; Gypsy-428_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-503
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-503
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2063-2063 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 503 BP; 162 A; 129 C; 83 G; 129 T; 0 other;
     tgtcgcatga cttgagaacc cctggtaaac acaaatcatt aacctcccac ttcgaaacca        60
     aatagcaccg aaaatgctaa agaatgcaat tgcaaccata tgtgacaatt gccgcacagc       120
     aataccatac accgatagac cttattccat tccttccttt ccacctcttg tgtggccgta       180
     cccaaatgca ctcgaacgag tggcatcaaa ttgcacaact caataggtcc gatagtccac       240
     cgaaattcta acagacgcag cagttaagaa cctttgtcaa aagtcactcc agccgtctcg       300
     cttacccata tacaaacata ggttaagacc aaattgtaaa aatcctatat aaatgaatga       360
     ctttgttgaa taaagaagat tctttgtccg agaactgact ctggcagtct ttcggcctga       420
     accggtagtt tctaccttag ttcggttacc gatttagcct aatagagaaa gccttctcca       480
     atcaaaggag ctttaatgct aca                                               503
//
ID   Gypsy-429_AA-LTR repbase;    DNA;    INV; 630 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-429_;
KW   Gypsy-429_AA-I; Gypsy-429_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-630
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-630
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2064-2064 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 630 BP; 220 A; 84 C; 144 G; 180 T; 2 other;
     tgtggtagag taaacctggg aagagaaaaa ggattaataa acgttaattt catagagtac        60
     ttaccattcm tttgctatcc gatttgattc actgtttawt aaacctgaat tgacgtttca       120
     tttagtaaac aaaacaaaat ctatgcttgc tacgatagca acggtataat ggtgttagtg       180
     aaaccgattt gatgcataaa agctaggtat gctcataatg atgaatgtga agcgtttgtt       240
     aaaaacgctt caataatgag ccaacggtga gaccccgatc aaaaagaaaa aagttaaaat       300
     ttgttcgtaa agcaggcgtg tgcattagtg tatgtgagta cgttaaggat gatgagggtc       360
     agtttacatc aatgtgagtg agaaataggt agaatgaatg aaatgtttaa tgtgtatatg       420
     tgattaacga tgggaataaa tctgtgtatt agtatatatt ctcattggtt gattggggtt       480
     gaactgaaac gaaaaaacga atgaagggat tctctcgacg aactttgcgg cgaacagacg       540
     cgtgtaaatt ttgtccggca gtataatttt tcaaaatgga ggaccagccg aaagacaaaa       600
     ttcgtcggcc taaaaggaaa agttaccaca                                        630
//
ID   Gypsy-42_AA-I repbase;    DNA;    INV; 5243 BP.
XX
AC   supercont1.331;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_AA_;
KW   Gypsy-42_AA-LTR; Gypsy-42_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.331; Positions  575082  569840.
XX
CC   'AAACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           920..5125
FT                 /product="Gypsy-42_AA-I_1p"
FT                 /translation="MPLSTNTEPFLPGTIPFAQYLEQLEWMFQHNKFTPDD
FT                 YKSSFLAVCGTEVFSRLKLLFPGRDFKDLTYNEITESLKKHYDKTDSDVIH
FT                 SFKFWTRRQSQHEKAVDFVLDVKNLAEQCNFGDFKDRAIRDVLVIGTYDRQ
FT                 LQNRLFDEEDLTAIKAEKIIVNKELASDRTNSLQRDDEPRMGVIARLGRRS
FT                 PDKIGYRERSRSDSRNRSVRFRNGGFNRYNREYGNRNRSPSKSPYFCSYCK
FT                 KRGHTKKYCFRLKDKKDSKSTPNVNFVGSPKPSTSDSSGLFKRLATDLEEN
FT                 SDEEDFACLMIPSVNKINQPCYVEAVVENKSFNMEIDCGSAESVISEELFL
FT                 RSFKNYCLERCNKRLVVIDGKRLQVLGKVDVLVQLNGLKQRLPLIVLRCDN
FT                 DFVPLMGRSWLDVFFGTWRQAFTQTMTRIHSLQNEELVDIKSKFPSVFDKD
FT                 MSRPIKGYVGDLVLKDDKPIFRKAYDVPLRLKQKVLNCLDDLEKDGIIEPI
FT                 EASEWASPVVVVIKKDQGIRLVIDCKATINKVIVSNSYPLPLIQDIFSTLS
FT                 GAKYFCSLDLAGAYTQLLLSERSKKFMVINTIKGLYRYNRLPQGAASSAAI
FT                 FQKVMDQVLHGLDNVVCYLDDVLICGKTLKECKEKLYLVLERLAKANIKVK
FT                 MEKCKFFVNELPYLGHVITDKGLLPCPDKVRTIREAKAPENVTELKAFLGM
FT                 VTYYAKFIPNLSSRINCLYSLLKKDVKYVWSTECDKAFNDCKYYLLKPKLL
FT                 EYFDPEMPVVIVTDACSYGLGGVMAHVVNGEERPVCFTSFSLNSAQKKYPI
FT                 LHLEALAIVSTVKKFHKYLYGKTFTIYTDHKPLIGIFGKEGKTSISVTRLQ
FT                 RYLRELAIYDYEIIYRPSNKMGNADFCSRFPLPDAVPANLDVEFVKSLNFT
FT                 NEFPINYNEIAQATKTDNFTKQLMKYIDKGWPERFDKQFKNAYAIHQEMEI
FT                 VDGCILFQDRVMIPDDMKTKILKLLHMNHSGITKIKQLARRCVFWFGLDSD
FT                 IEKFVKSCNICNEMTAVTRPAKYSQWIPTNKPFSRVHADFFHFDKKIFLLV
FT                 VDSHTKWVELEHMPHGTNTKNVIKIFLNIFARFGLPDVLVTDGGPPFNSDL
FT                 FVNFFEKQGIIVMKSPPYHPESNGQAERMVRLVKDVFKKFIRDAEMRKLDI
FT                 NEQIAFFLINYRNTCLGANDKFPSEKLLSYKPKVLLDLIHPNNNYKKKLTN
FT                 SVNESQRNDKRKDDAPDPFACLRVGDLLYYRNNNKTDIRKWLPVKFIKKTS
FT                 SNILQVSLGGRVVQAHKRQLKLTDSRRKTSNRFVFHGESVASIPLEQPSTS
FT                 DRSIVPSHPHQADMADTTKRSNKRRREDDEGDCVGVISSDSESDFYGFAAD
FT                 SFIFGTHQDPEFLTHIGNDSIRRSGRRLKKKRKEDYVYY"
XX
SQ   Sequence 5243 BP; 1667 A; 824 C; 1101 G; 1651 T; 0 other;
     gtgtcgacaa ggattgaact ggattttttt ttaaccgcgt gtgaaagtga aaatttcagt        60
     gcagatcaaa gttttcgggt ttttgtgaac cgtcaagtgc gccggagttt gttcggattt       120
     aagatttgtc cgtttgacga aagttgaaag gccacagtac gtaaaaaaaa attgatcaaa       180
     agtaagaaat cattattagc tgaagcatat attgaagcgc ttttgtttct gctagtggtt       240
     ttcaagcctt tttgcagaac gtttgtcagc ttctgtgaaa atcgatattc cagctaaaac       300
     ctgtgatttt gttttgccgt gaagttttga gcacatttgt aaaaagtttt tatagagaaa       360
     tctagcattc gcgtcaccag taacgccatt ttgtgaagta atatttgcag ttggttattt       420
     cgagttgctg atcttttatt tatctgctat tcataccatt gttttttttt tctccatctt       480
     ttattttgtg ctcaggcaca gagttctggc gtcagtggag atcacaccgt gattagtgag       540
     aaagccaata gtgagagatc tttcacctca gtagatcttc agtgagagct atttttggaa       600
     gcaaatatca ctctgtttgt tttgaaaaaa ggttatttag tgtagaaagg tcattgactc       660
     gcttgtattt tggtcagaag atcgtacgtt gacctttgca cctactacat tgctctattg       720
     ggctgttgct gtgaagaata cgctgctgct gtgaaaaata cgctattact gtggaggaaa       780
     cgttgctgct gttaagaata cgctgttgtt gctgtgctgc tggtgccatt gctgctgttg       840
     tggatatttt gcaccgctga ttgacgctgt tgttgctgag ttcgagtgat cgatctattt       900
     ggattacatt ggtcgaaaga tgcctctatc taccaatacc gaaccgtttt tgccaggaac       960
     cattcctttc gctcaatatt tagagcaact tgaatggatg tttcaacata acaaattcac      1020
     gcctgatgat tataaatcat catttttggc ggtttgcgga acggaagttt tttcccgttt      1080
     gaaactactg tttccaggtc gtgatttcaa agaccttaca tataatgaaa tcaccgagag      1140
     tttaaagaag cattacgaca aaacagattc tgatgtcatt catagcttca aattttggac      1200
     gcgcaggcag agccaacacg aaaaggcggt tgattttgtt ctcgatgtaa agaatttggc      1260
     agagcagtgt aacttcggtg attttaaaga tagagcgatt agggacgtgt tagtaatagg      1320
     aacatacgac cgtcaattac aaaatcgact atttgatgag gaggacctta ctgctatcaa      1380
     ggcggaaaaa attattgtta acaaagaatt ggcttcagat agaacgaatt cattacaaag      1440
     ggacgatgaa ccgcgaatgg gtgttatagc caggctcggg cgtagatcgc ctgataaaat      1500
     aggctataga gaaagaagta gaagtgacag tagaaatcgt tcggttcgat ttaggaatgg      1560
     aggtttcaat aggtacaatc gtgaatacgg taacaggaat agaagtccca gtaaatcgcc      1620
     atatttctgt tcctattgta aaaagagagg ccacactaaa aagtattgtt tccgtctcaa      1680
     agacaaaaaa gatagtaaga gtacaccaaa tgtaaatttt gtcggttctc ctaagcctag      1740
     tacctccgat tcttctggcc tttttaagag acttgctaca gatttagagg aaaactctga      1800
     tgaagaggat tttgcatgtc tgatgatacc ttcggtcaat aagataaatc aaccttgtta      1860
     tgttgaagca gtagtagaaa acaaatcatt taatatggaa attgattgcg gttcagcaga      1920
     aagtgtaatc tcagaagagc tgttcctacg aagttttaaa aattattgct tggaaaggtg      1980
     caacaaacgg ttggtggtta tcgatggcaa aagattacag gttttgggaa aagtggatgt      2040
     attggtacag ctgaacggtt tgaagcaacg tctgcctttg attgtattgc gatgtgataa      2100
     cgatttcgta cctctaatgg ggagaagctg gctggacgtc ttttttggta cctggaggca      2160
     agcatttacc caaacaatga cccgtatcca ctcgctgcag aatgaggaat tagtagacat      2220
     taaaagtaag tttccttctg tttttgataa agatatgtct cgtccaataa aaggttatgt      2280
     tggtgatttg gtgctgaaag atgataagcc tatttttcgt aaagcgtacg atgttccttt      2340
     aaggttgaag cagaaggttt taaattgttt ggatgattta gaaaaggatg gaattattga      2400
     gccaattgaa gccagtgaat gggcctcacc cgtagtggtg gtaattaaaa aagatcaggg      2460
     tattcgtcta gtcattgact gcaaggcaac aataaacaaa gtaattgttt caaattctta      2520
     ccctctacca ttgatacagg atattttttc aactctcagt ggagctaaat atttttgctc      2580
     tttagattta gcaggtgctt acacacaact tctgttgtca gaaaggtcga agaaattcat      2640
     ggtgattaac accataaaag gtttatatcg ttacaaccgt ttaccacagg gagctgcttc      2700
     aagcgcagcc atatttcaaa aagtaatgga ccaagtactt catggtttag ataatgttgt      2760
     ttgctatttg gatgacgttt taatttgtgg gaaaactttg aaagaatgta aagaaaaact      2820
     ttatttagtt ttggagagat tagctaaagc taatataaaa gttaaaatgg aaaaatgcaa      2880
     attttttgtt aatgagttgc cttatttagg acatgtaata actgacaaag gattattacc      2940
     ctgtcctgat aaagtgagaa ctattcgcga agcgaaagct ccggaaaatg ttacagagtt      3000
     aaaggctttt ttgggaatgg tgacgtatta tgctaagttc attccaaatt tatcttcccg      3060
     aatcaattgt ctctatagtc tgcttaaaaa agatgttaaa tatgtttgga gtacggagtg      3120
     tgacaaagca tttaatgatt gtaaatatta tcttttgaag cctaaacttt tggagtattt      3180
     tgatcctgaa atgcctgtag taatagtcac tgatgcttgc tcctatggtt taggaggtgt      3240
     aatggcacat gttgtaaatg gcgaagaacg tcctgtttgt tttacgtcct tttcattgaa      3300
     tagcgcacaa aagaaatacc caattttaca tcttgaagct ttggctattg tgagcaccgt      3360
     aaaaaaattt cataaatatc tctacggaaa aacatttact atttatacag atcataaacc      3420
     tttgattgga attttcggaa aagaggggaa aacttctatt tctgtaacaa ggttacagcg      3480
     ttatttgaga gaacttgcta tttacgatta cgagataatt tatcgtccat caaataaaat      3540
     ggggaacgcc gacttttgtt ccagatttcc acttccagat gctgttccgg caaatttaga      3600
     tgtggagttc gttaaaagtc ttaattttac aaatgaattc ccgatcaatt acaacgaaat      3660
     agcccaggca acaaaaactg acaattttac aaaacaactt atgaaatata ttgacaaggg      3720
     ttggccagaa cgttttgata aacagtttaa aaatgcatat gctatccatc aggaaatgga      3780
     aatagtggat ggttgcattt tatttcaaga tcgggttatg attcctgatg atatgaaaac      3840
     aaaaatttta aaattactcc acatgaatca ttcaggtatc actaaaataa agcaactggc      3900
     acgcagatgt gttttctggt ttggtttgga ctcagatatt gaaaaatttg tgaaatcttg      3960
     caatatatgc aatgagatga cagctgttac aagacctgcc aaatattctc aatggattcc      4020
     aaccaataaa ccattttcac gcgtccatgc tgattttttt cattttgaca agaaaatttt      4080
     tctgttggta gtggatagtc atactaaatg ggtagaattg gaacacatgc ctcatggaac      4140
     aaataccaag aatgttatta agatttttct taatattttc gccagatttg gtttaccaga      4200
     tgtcctggta acagacggag gtccgccatt caattccgac ctgtttgtaa atttttttga      4260
     aaaacaaggg ataattgtca tgaaaagccc tccttaccat cctgaaagta acggacaggc      4320
     agaaagaatg gtgcgtttgg taaaggatgt atttaaaaaa tttattaggg acgcagaaat      4380
     gaggaaatta gatataaatg aacaaatagc attctttctc atcaattaca gaaatacgtg      4440
     ccttggcgca aatgacaaat ttccatctga aaagcttctt tcatataaac caaaagtttt      4500
     attagacctg attcatccga ataataatta taagaaaaaa ttgactaatt cagtgaatga      4560
     atctcaaaga aatgataaaa gaaaggatga cgcacccgat ccttttgctt gtttaagagt      4620
     tggagatctg ttatactata gaaataataa caagactgac ataaggaaat ggttacctgt      4680
     aaaatttata aaaaagactt cttcaaatat tctacaggtt tctcttggtg gaagggtggt      4740
     ccaagcgcat aagcgtcagt tgaagttgac agactctcgc cggaaaacgt caaatcggtt      4800
     tgttttccac ggagagagcg ttgcatcgat accactagaa caaccaagta ctagcgacag      4860
     aagcattgta ccgagtcatc cacatcaagc cgacatggct gatacaacca agagatcgaa      4920
     caagagaaga agagaagacg atgaaggaga ttgcgttggt gttattagtt ctgattcaga      4980
     atctgatttt tatgggtttg cggctgattc atttattttt ggcactcatc aagatccaga      5040
     gtttttaaca catattggaa atgattccat tcgaagatca ggaagaagat tgaagaaaaa      5100
     acgaaaagaa gattatgtat attattaatg attcctaatt tgtgtttaaa taatgaattg      5160
     tatgttccat ctgaattgta gcataaagaa attgctttcg agtttttaat cagtgatatt      5220
     tttggcttaa aggggtaagg agt                                              5243
//
ID   Gypsy-42_AA-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   supercont1.331;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_AA_;
KW   Gypsy-42_AA-I; Gypsy-42_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-223
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.331; Positions  569839  569617.
XX
SQ   Sequence 223 BP; 75 A; 39 C; 46 G; 63 T; 0 other;
     tgtaatatcg ctttcgttta gtcgagactt tcgaccacag agtggaatcc ccaaaacaat        60
     gtattatgga actgagtgga atgagagtag cttaccagag atgggtgagt tctagtttgt       120
     gtataaaatg agcatgagaa atacatgagc ttcagaagtt ttgtaactat caactcgaca       180
     agtgttcacc tacataattc tcccgaaaat accagataat aca                         223
//
ID   Gypsy-42_AnFu-I repbase;    DNA;    INV; 4460 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4460
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2926-2926 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..1143
FT                 /product="Gypsy-42_AnFu-I_1p"
FT                 /translation="METKMEEMKLFLEMGKVPDILKMLPEYDGNPKGLNTW
FT                 LDDVEGIFHFYAPFANCPTQMGIIMRIVRRKIVGEASDILNANHVGFDWES
FT                 TKETLKKHFRDQRNLKTLDYDLTVIRQKYGESIEQYYNRTNELLSLIIAYI
FT                 KNSEKYVELGNGFVDYFKEKAVDSFIRGLNNELGILVKTAAPDSLNKAYQL
FT                 CLEFQKMQKGTQNHGQNRFQKPNYSVKAEESRNYHYQTQSQRGTRSSVPMM
FT                 VDHSIRSKPTHAPKKSTQVNAYQDNEAQCSANFFGMSTNTETPHS"
FT   CDS           1104..4337
FT                 /product="Gypsy-42_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFWDEHEHRDTALIENIVPQLPYIEVPVTHGKIRLLV
FT                 DSGANTNIISKKWAYSSGNRIFQIEPKSFQSVVGTLVSSEVVSLKLFSPVL
FT                 DREFVFHVYDYHDFFDGIIGTEILFAKEFNLTTRYRRVEITNTFNRIYHIP
FT                 LKFHGTSENSKKDNRRVLQVLDIESKIQLPYLLTEERNSLIPLLNSHSNIF
FT                 HAQDSKLTCTTNVECRIKTTDDAPVYQKSYPYPVAYKHEVEKQISKLLDDG
FT                 IIRPSRSAWNSPLWIVPKKVDHSGEKKFRLVVDYRKLNQKTVSEKYPMPEI
FT                 QNILDQLGGNKYFTTLDLASGFHQIRVNEADIEKTAFSVNNGKYEFCRMPF
FT                 GLKNAPAIFQRAIDDIFRQYIGKICYVYMDDLVICGKDLRDHINNLHLILS
FT                 ALEEANLKVHLEKSKFLCKSVEFLGYVITSDGIKPNEEKIATIRKWPKPRN
FT                 IKQLRSFLGMVGYYRRFVKGYANLTKPLTNLLRGLTNDNKLIELTPLETKC
FT                 FENMKLILSGNDILSYPDFKKPFLITTDASNYAIGAVLSQGDIGNDKPIHF
FT                 ASRTLNKREENFSATEKEMLAIYWSLKIFRNYIYGQRFKILTDHQPLTFSL
FT                 SSKNVNTKLKRWKSYLEEHDYEMVYTPGKNNIVADALSRVQIFSLTPTQHS
FT                 ADEDPSDLIKCTEAPLNAFKLQIVIETDNSEDTLISNPFPGYKKIIVKRQQ
FT                 YTEQVLRSIFNQFFVPNKLTGLNTSEKIMGDFQRMYQKYYSSSKTYKIRFT
FT                 QNILNDVSEVEEQEQIIKKEHERAHRGIDENKRQILRKSYFPKITEKVRNF
FT                 IKTCDTCNTCKYDRHPLKVYLQETPIPKHPFEILHVDIYQIDGESFLSSID
FT                 KFSKFGRMLPIKSRQIVDIRKAFEKTITSYLIPSMIVTDNEKSFLSTEIRG
FT                 IMLDLNITAYITPSNKSEVNGQVERFHSTITELYRIEKLVQPNYSVKRRMA
FT                 IVIGKYNDTIHSVTQRTPKEILLGISHNPTTVEDIETVRQKVYDEVIVRLQ
FT                 EAQEKQQKHHNKGRKAPPELRTGQAIFVKDKIFKGKQKPLFKKTYVTTDKR
FT                 VTAKNEYDHLVHKTNIRNVQL"
XX
SQ   Sequence 4460 BP; 1639 A; 827 C; 823 G; 1171 T; 0 other;
     ggcgcccgaa taaaaaaaag agattattag taacagtata aactctcaga gcgaagccac        60
     ctttagctgt ctcttttctg agaatacagc atccagccca agagctatca tcgcgcgtgt       120
     cgttgatttg cgtagctgta gcgcgacaag gtgcgctaat ttctctttgg tagaccaata       180
     cctgaaagtc gactctctca gtatcctgga gatccaactg ttccattgta cgtgtaagta       240
     tagtgagaaa aaatacagtg atagtgatcg caaaagccag gagaaatgga aacgaaaatg       300
     gaagaaatga agctttttct agaaatgggc aaagtcccag atattttgaa aatgttgccg       360
     gaatatgatg gtaaccctaa aggccttaat acttggcttg atgatgtcga aggtattttt       420
     cacttttacg cacctttcgc caattgtccc actcagatgg gaataataat gcgaattgtg       480
     cgaagaaaaa tcgttggtga agcgtctgat attctcaacg caaaccacgt agggtttgac       540
     tgggagagta cgaaagagac attaaaaaaa cactttcgcg accaacgtaa tcttaagacc       600
     cttgattacg atttaacagt aattagacaa aaatacggag agagcattga gcaatattac       660
     aatagaacta atgaactttt gtcgttaata atagcttata taaaaaatag tgaaaaatat       720
     gtagaattag gaaatggttt cgtggattat tttaaggaaa aagctgtaga tagttttatt       780
     agaggattga ataatgaatt aggtatttta gttaaaactg cagcacccga tagcttgaac       840
     aaggcatacc aactttgttt agaatttcaa aagatgcaaa agggaacaca aaatcatggg       900
     cagaacagat ttcaaaagcc aaattattct gttaaagcag aagaaagcag aaattaccat       960
     tatcagacac agtcacagag agggacacgt tcatcggtac ctatgatggt tgatcattct      1020
     atacgatcaa aaccaacaca tgcccccaaa aagtcaacgc aagtgaacgc ctatcaagat      1080
     aatgaggcac aatgtagcgc taattttttt gggatgagca cgaacacaga gacaccgcac      1140
     tcatagaaaa tatcgtgcca cagcttccat acattgaagt cccagttaca cacggcaaaa      1200
     taagattact cgtcgatagt ggagcaaata ctaacatcat atcaaaaaaa tgggcctata      1260
     gttcaggtaa ccgcattttt caaatcgaac cgaaatcatt ccaaagtgtt gttggtacgt      1320
     tagtatcatc ggaagttgtg tcgttgaaat tattttcacc tgtgttagac agggaatttg      1380
     tgtttcatgt ttacgattac catgattttt ttgatggtat aatcggtaca gagatattat      1440
     tcgcgaaaga attcaatctc actacacgct atcgaagagt agaaattacg aacacattta      1500
     accgaattta tcacatacca ctgaaattcc atggtacgag tgagaatagc aagaaagaca      1560
     ataggagagt tcttcaagtt ctcgatatag aatccaaaat tcaattacct tatctcttga      1620
     cagaagagcg aaattctctc attccactac ttaactcaca cagtaacatt tttcacgcac      1680
     aagattcaaa gcttacctgc acaacaaacg tcgaatgcag aataaaaaca accgatgatg      1740
     cacctgtgta tcaaaaaagt tatccctatc ctgttgctta caaacacgaa gtagagaaac      1800
     aaatatcgaa gttattggat gatggtatta ttcggccatc gcgttctgct tggaattctc      1860
     cactttggat tgttcctaaa aaggttgacc attctggtga aaaaaaattt agactcgtag      1920
     ttgattaccg taaattaaat caaaaaacag tttccgaaaa atatcctatg ccagaaattc      1980
     aaaacattct cgatcagtta ggcggaaaca aatactttac cacattggat ctggcttctg      2040
     gttttcacca gataagagtt aacgaagctg atatagaaaa aacggcattt tcggtcaata      2100
     acggtaaata tgagttttgt cgaatgccgt ttggcttaaa gaatgcacca gcaattttcc      2160
     aacgtgcaat agatgatatt tttcgccagt acattggtaa aatttgctac gtatacatgg      2220
     acgatctagt aatttgcggt aaagatttgc gcgatcacat aaataattta cacttgattt      2280
     tgtccgcatt ggaagaagct aatctcaaag tacatttaga aaaatcaaaa ttcctctgta      2340
     aatccgtaga atttctcgga tacgtgatca cttcagatgg cataaaaccg aacgaggaaa      2400
     aaatcgcaac catacgtaaa tggcctaaac caagaaacat aaaacaacta agaagtttct      2460
     taggtatggt tggatactat agaagatttg ttaaaggcta cgctaaccta accaagcctt      2520
     taaccaatct acttagaggc cttactaatg acaacaaact aatagaatta acccccttag      2580
     aaacaaaatg ttttgaaaac atgaaactaa ttctttcggg aaacgatatt ctttcctacc      2640
     cggattttaa aaaacctttt cttataacaa ctgacgcatc taattacgcc ataggcgcag      2700
     tgctcagtca gggagacatc ggaaatgata aaccgataca tttcgcttca cgaaccttaa      2760
     acaaacgaga agaaaatttt tcagcgactg aaaaagaaat gttggctatt tactggtctc      2820
     tgaaaatttt tcgtaactat atctatgggc aaaggtttaa aattcttact gaccaccaac      2880
     ccttaacatt ttccttgtca tcgaaaaacg ttaacactaa actaaaacgt tggaaatctt      2940
     atctggagga acacgactat gaaatggtgt acactccagg aaagaacaat atcgtagctg      3000
     atgcgcttag tcgcgtacag attttttctc tcactccaac tcagcattct gctgatgaag      3060
     atccttcaga tcttattaaa tgcactgaag ctcctctcaa cgctttcaaa ttgcaaattg      3120
     ttatagagac ggataatagc gaagatactc ttatctcaaa tccttttccc ggctataaga      3180
     aaataatcgt taaaagacaa cagtatacag agcaagtgct acgtagtatt ttcaatcagt      3240
     tcttcgttcc aaacaaattg acgggattaa acacatcaga aaaaatcatg ggtgatttcc      3300
     aaagaatgta ccaaaaatat tacagttctt caaaaactta caagatcagg ttcacacaga      3360
     atattctaaa tgatgttagc gaggtcgaag aacaagaaca aattataaaa aaagagcacg      3420
     aaagagccca ccgaggcatt gacgaaaaca aaagacaaat attaaggaaa tcttatttcc      3480
     cgaagataac tgaaaaggtc aggaatttca ttaaaacatg cgatacgtgt aacacatgca      3540
     aatacgatcg acacccacta aaagtatatt tacaagaaac gcctataccg aaacaccctt      3600
     tcgagatact gcacgtagac atataccaga tagatggtga aagtttcctc tcaagtatag      3660
     acaaattttc taaatttgga agaatgctgc ctataaaatc tagacaaata gtagatattc      3720
     gaaaagcgtt cgaaaaaacg attacgtcat atctgatacc atcaatgatt gtcaccgata      3780
     acgaaaaatc ttttctatca acggaaattc gcggaattat gttggaccta aatattacag      3840
     cctatattac gccaagtaat aaatcagagg tcaatggtca agtggaaagg ttccattcaa      3900
     caataactga gctgtaccgc atagaaaagc tcgttcaacc caattactcg gtcaagagga      3960
     gaatggcgat tgtgatagga aagtacaacg acacaatcca cagcgttacg caaagaacac      4020
     ctaaagaaat tcttttagga atttcgcata atcccacaac agtggaagac atcgaaacag      4080
     tacgacaaaa agtgtatgat gaagtgatag tacgacttca agaagctcaa gagaagcagc      4140
     agaaacatca caacaaaggc aggaaggcac ctccagagct aaggacgggc caggcgatat      4200
     ttgtaaaaga caagatattt aaaggaaaac aaaaaccttt gtttaaaaaa acctatgtaa      4260
     ccacagacaa gcgagtaaca gcgaaaaatg aatacgatca tttggttcat aaaacgaata      4320
     taagaaacgt acagctatga aaagtcggta tgaaatgtaa taagacgtaa tacgataatg      4380
     taatgtgcag ttatgaattg ttaaaataag gtgacgataa ttaaagttga tcctggaggc      4440
     tcaacactta aggatggggt                                                  4460
//
ID   Gypsy-42_AnFu-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2854-2854 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 137 BP; 42 A; 18 C; 30 G; 47 T; 0 other;
     agttaccgta tcgtgtagga tagtgttagt attaagtatt ctatttatgt attagttaag        60
     ctaggtgtaa ggtgcgcata gattttaata aaactttagt cgataagcaa ccaccagagt       120
     gtgcagactc gttaact                                                      137
//
ID   Gypsy-42_CQ-I repbase;    DNA;    INV; 5578 BP.
XX
AC   AAWU01014973;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_CQ_;
KW   Gypsy-42_CQ-LTR; Gypsy-42_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5578
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 463-463 (2011).
XX
DR   GenBank; AAWU01014973; Positions   38603   44180.
XX
CC   Positions [4369-4839] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1045..5385
FT                 /product="Gypsy-42_CQ-I_1p"
FT                 /translation="MSIASTIEQYRKGSSFGDWAERLEYNFKANKYTDDLM
FT                 KTHFMNLCGSYLYSELKTIYKKSDLDKATYTELVEKLKQKLHKTEPDLVQR
FT                 FRFSKRIQHPDETAEEFVQAVKLQAEFCNFGEFRDNAILDRVLVGLTDDDL
FT                 KEQLLKEEKLTIAKMDKYITTWNIAKSNVHAINARTHTPPGNINQIRRSVR
FT                 ERLGFNPYNYRQNSQYRNNYNRANNYNRQDNFNNQQRAHISPRAHNSQRTV
FT                 RFQHSNRNFNRNANYNNNNNGYNGGNNNIGYNGGNNNFRSVHCGQLGHIKR
FT                 KCFRLKNQRREAVNFVTEDRAGPSGRPSAGPSGGSSAETGAERQLSSMMGR
FT                 LSTGGNVDLDTSDTDCEEWNAGDLQCMCVASLNKISEPCLINVLLDNIFVE
FT                 MEVDCGSTVTVMGKLQFDNLFNKRLLKSNKQLLVVNGNKLKIWGETDVLVQ
FT                 LNGLKRNLKIIVLDTDFKFIPLFGRNWMDVFFPQWRQFFSNNTAINEQVNR
FT                 VTAPNGDKLIEQIKSDFPEVFIKDFSTPIKGFEAELVLKINVPIFKKAYDV
FT                 PYRLREQVLEYLDRLEKENVITPVKSSEWASPVIIVMKKDNKIRLVIDCKV
FT                 SINKVLVPNTYPLPIASDLFAKLANCKVFCALDLEGAYTQLALSERSRKFM
FT                 VINTIKGLYTYNRLPQGASPSASIFQQMMDQVLGGIENVYCYLDDVLIAGE
FT                 TLDNCHNKLIIVLNRLAMANIKVNWEKCKFFVSDLKYLGHIISEKGLMPSP
FT                 DKISTIQKAKVPKNENELKSYLGLINYYNRFIPNMSSKLFYLYNLLRKNVK
FT                 FNWDHNCDKAFHDSKQALVEANILEFYDPKKDIIVVSDASGYGLGGVIAHV
FT                 IDGVEKPISFTSFTLDDAQKKYPILHLEALALVCTIKKFHKYLFGQEFIAY
FT                 TDHKPLLGIFGKEGKNSIFVTRLQRYILELSIYKFELRYRPSAKMGNADFC
FT                 SRFPLEQSVPAELDQDIVRSINFSREFPLDSVSIAKATVDDVYLQQIMNYL
FT                 RVGWPQKIDKRLLDVYANQSDLEEVDGCLLYQDRVVIPRKMQSGILKLLHA
FT                 NHAGMVKMKQLARKQVYWFGINKDIEKYVSTCDVCASMAVVPKTKIESQWT
FT                 PTTRPFSRIHIDFFYFSNHTFLLIVDSFSKWLEVEWMKRGTDCAKVVKKLV
FT                 SYFARFGLPDVLVSDGGPPFNSYSFTSFLERQGIKVMKSPPYNPQSNGQAE
FT                 RLVRTTKDVLKKFLLDPDLDSVDLEDQINLFLMNYRNNIVTSSGQFPSDRV
FT                 FLYKPKTALDLLNPKKHYKQFLTVPPTPNDEVVDVPKAIRKASKDELDELI
FT                 AGDLVWYKNNKNSIPNRWIKASFIKKFSPNVFQVLAGSGEILAHKDQLRPY
FT                 RAREEARTNILIPTASGANMNLEQTATLRASGSADEDGDFRGYSNAELARV
FT                 RKRKVDAAQLPEVCLRRSKRLRKPKQDFEFKYV"
XX
SQ   Sequence 5578 BP; 1669 A; 895 C; 1311 G; 1703 T; 0 other;
     gcgtacgttt tagtggcgac ggggatcaag gatttttttt ctctccggtg aaaaagtagt        60
     gattttggta atttttcatc gcgtttcgcg gtacgcgttt tgcgttttta taactccaaa       120
     tcatctacgg ctttgccgag gtaaagaagt tcttttgtga gagtacgggg tgaatttcgc       180
     ggcagtgtgc ttcagaggtg atcggctcga gtctaccaag caagcggcca ttttgaagct       240
     tcttcggagg gcgtcggtgg agcgaattcc gtgcgagaga tccggctgat cacggttccg       300
     gagtggacgc agtaggctgt ggctgttgga atctgggagg agaatcgtta gcggcaagta       360
     gcagaagcgg aggtcggcaa ttttggcaaa atctgtcggt tttggttggc gtcggcgtgg       420
     atcggacaaa ggctgccacg cggtacgttt cttttgtttg agctgtttct taaggtaggg       480
     gcgattgggg ccaaataagt tccttttgct ttttttcttt attttaaaat catgttccac       540
     tgatcgtatc acagttggaa caagttcgtg attttggttg tcctaacatt ttaacatttt       600
     agaaaattga gtgtgcgtgt gtgtgagctc tttttgttct gggtagaaca aaggaggata       660
     gaaaattttc atcccatttt aagagtgttc ttctttttta tttattcagt gcggtgaatt       720
     tgccgaaggt cagtgaaggt gcttattggc ggcgtaggac gttcacgttc tgtctgctga       780
     acttccgggt gaaatcctcg gtgcttttca acaaggtcgg agttctggta taggagagcc       840
     ggaattctgg tgaagtgcgt cggctttttc tgctgtcaga acgacggtgc ttcagcacag       900
     gagcaaaggt ttggtaacct tggtggtgag tttttaagca gatttttttt gaaaactgtt       960
     agagcctaat ttggccattt ttggtgtttt cttttctttt atttttgatc ttttgtttaa      1020
     aaaagtggtt ctaaatagaa caagatgagc attgcttcca caattgagca gtaccggaag      1080
     ggttcgtcct tcggtgactg ggctgaaaga ttagagtaca attttaaagc caacaagtat      1140
     accgacgact tgatgaaaac tcactttatg aatttatgtg gttcatactt atactctgaa      1200
     ctgaaaacta tttacaaaaa atctgatctc gataaagcaa cttatacaga attagttgaa      1260
     aaactcaaac aaaaactgca taagactgaa ccggacctgg ttcagcggtt ccgtttcagc      1320
     aagaggattc agcatcctga cgaaaccgct gaagagtttg tccaggcggt caaactccag      1380
     gccgagtttt gcaattttgg ggagtttcgc gataatgcaa ttttagatcg ggttttagtg      1440
     ggtttaactg acgatgactt aaaagagcaa cttttgaaag aggagaaatt gacgattgct      1500
     aaaatggaca aatatattac aacatggaat attgcaaaat caaatgtaca cgcaatcaac      1560
     gcacgaacac acacaccacc agggaacatc aatcaaatta gaaggtcagt tcgggagcga      1620
     cttggcttta acccatacaa ttataggcag aactcgcaat atcgaaataa ttacaataga      1680
     gcaaataact acaatagaca ggacaatttt aacaatcagc aacgtgcaca catttcacca      1740
     cgagctcaca attctcagcg tactgttcga tttcaacaca gcaacagaaa ttttaatcga      1800
     aatgcaaatt acaacaacaa taacaatggt tacaatgggg gaaacaataa cattggttac      1860
     aatgggggaa acaataactt cagatcagtt cactgtggtc agttgggtca catcaagcgg      1920
     aagtgcttca ggctgaagaa ccagagaagg gaagcggtaa actttgttac tgaggacaga      1980
     gcgggacctt caggtagacc gtcagctgga ccttcaggtg gatcgtctgc tgagactggt      2040
     gcggagagac agctgtctag catgatgggg cggctgagca ctggtgggaa tgttgatctc      2100
     gacacatctg atactgactg tgaggagtgg aatgcaggtg atttacagtg tatgtgtgtt      2160
     gcgtccttga ataagattag tgagccttgt ttgatcaacg ttttgttgga taatattttt      2220
     gttgaaatgg aagtggactg tggttcaact gtgactgtga tgggaaaatt acaatttgac      2280
     aatcttttta ataagcgttt gctgaagagt aacaagcaac ttttagttgt gaatgggaac      2340
     aagttgaaga tctggggaga aactgatgtt ttagtgcaac ttaatggttt gaaacgcaat      2400
     ttgaaaatta ttgttttaga tacggacttc aaatttattc ctttgtttgg tcgaaactgg      2460
     atggatgttt tctttccaca gtggagacag ttcttctcta acaatacagc aattaatgag      2520
     caggtaaaca gagtaacagc gccaaatggt gacaagttga ttgagcaaat taagagtgat      2580
     tttccagagg tttttatcaa ggatttttct acacctatca aaggttttga agccgaattg      2640
     gttttaaaaa ttaatgtccc gatttttaag aaagcatatg atgtgcctta ccgtttaagg      2700
     gagcaagttt tagaatattt ggacagattg gaaaaagaaa acgttattac tccagtgaaa      2760
     tctagtgaat gggcttcacc agtaataatc gtaatgaaga aggataataa gataagactg      2820
     gttattgact gcaaagtttc aattaacaag gtcttagttc caaatactta ccctttgcca      2880
     attgcgagtg acttatttgc taaactggca aattgtaagg ttttctgtgc tcttgatttg      2940
     gagggagctt acacacagtt ggcattgtcg gaaaggtcca ggaaattcat ggtgataaat      3000
     acaataaaag gtttatatac atacaatcgc cttccacaag gtgcttcccc aagtgcttcg      3060
     atatttcaac aaatgatgga tcaagtcttg ggaggaattg aaaatgttta ttgctatctt      3120
     gatgatgttt tgattgcggg agaaaccctg gataactgtc ataacaagtt gataattgta      3180
     ttgaatcgtt tggcaatggc taatattaaa gtcaactggg aaaagtgcaa gttttttgtt      3240
     tctgatttga aatatttagg gcacattatc agtgagaaag gtctcatgcc cagtccagat      3300
     aaaatttcga caattcaaaa ggcaaaagtt cctaaaaatg agaatgaact gaaatcttac      3360
     ttaggtttga ttaattatta caatcgtttt atacctaaca tgtcttcaaa gctgttttat      3420
     ttgtacaatt tgttaagaaa gaatgtgaag tttaattggg atcataattg tgataaagct      3480
     tttcatgaca gtaaacaggc tttggttgaa gcaaatattt tggagtttta tgatccaaag      3540
     aaagacatta ttgtggtttc tgacgcatcg ggctatggcc ttggaggagt gattgctcat      3600
     gttattgatg gtgttgaaaa accgattagt tttacttctt ttactttaga tgacgcgcag      3660
     aagaaatatc ctattcttca cttggaggca ttggctttgg tttgtacaat taagaaattt      3720
     cataaatatt tattcggaca agaattcatt gcttacactg atcataaacc attgctaggt      3780
     attttcggca aagaaggtaa aaattcaatt tttgtaacga gactccaacg gtacattttg      3840
     gaactttcta tttataaatt tgaacttcgg tataggcctt ctgcgaaaat gggaaatgcg      3900
     gatttttgtt cgagatttcc attggagcag tcggttcctg ctgaattgga tcaagatatt      3960
     gtacggagca taaactttag tagggagttc cctttagatt ctgtttcgat tgctaaggca      4020
     acagttgacg acgtttattt acagcaaatt atgaactatc tgcgtgttgg atggccgcaa      4080
     aagattgaca aacgcttact ggacgtttac gcaaatcaaa gtgatttgga agaagtcgat      4140
     gggtgcttat tgtaccaaga cagggtggtt ataccacgta aaatgcaaag cgggattttg      4200
     aagcttttgc atgccaacca cgcagggatg gttaagatga aacaactggc aaggaaacag      4260
     gtttattggt ttgggattaa caaagacatt gaaaaatatg tttctacgtg cgacgtctgt      4320
     gcaagtatgg ctgtcgtacc aaaaactaag attgagtctc aatggacacc tacgactaga      4380
     ccttttagta ggattcacat tgatttcttc tacttttcca atcatacttt tttgttgatt      4440
     gttgattctt tttcgaagtg gttggaagta gaatggatga agaggggcac ggattgtgca      4500
     aaggttgtga agaaattggt atcgtatttt gcgagatttg gattaccgga tgttctggta      4560
     tcagacgggg gtcctccttt caactcttat tctttcactt ctttccttga aaggcaagga      4620
     ataaaggtga tgaaaagtcc accttataat ccacaaagca atggacaagc cgaaaggcta      4680
     gtgagaacaa ctaaggatgt tttgaaaaag tttttgttgg atccggattt ggacagcgtt      4740
     gatttggagg atcagattaa cttattttta atgaattatc gtaataacat tgtgacgagt      4800
     agtgggcaat ttccctcgga tagagtattt ttatataaac caaaaacagc tttggacttg      4860
     ctgaatccca aaaagcatta taaacaattt ttaactgtgc caccaacccc aaatgatgaa      4920
     gtggtagatg taccaaaagc aatcagaaag gcgtcaaagg acgaattaga tgagctgata      4980
     gctggggatt tggtgtggta caagaataac aaaaatagca taccaaatag atggattaaa      5040
     gcaagcttta ttaagaaatt ttctccaaac gttttccagg tgttggctgg aagcggggaa      5100
     atcctcgctc ataaagatca gctgcgacca taccgggctc gtgaggaagc gaggacaaat      5160
     atcctaattc cgacggcatc cggtgcaaac atgaacctgg aacaaacagc gacgctgaga      5220
     gcgtccggaa gcgcagacga ggatggagat ttccgtggat actcgaacgc cgagctggct      5280
     agggtcagaa aaagaaaagt tgatgcggct caattgccgg aagtgtgctt aagacgttca      5340
     aaacgtttgc gtaaacctaa acaggatttc gaatttaaat atgtttaact ttggattttt      5400
     ttcatgtcgt tgaattgcga tttcggattt atatagagaa atgtattttg atcagaatta      5460
     aaataaattg attttgttag catttgaagt gaattctttt actttggaaa cagtgaattg      5520
     taaaatattt ttagtttaat cttagactat agaaacaact tccgaaaggg gaaggagt        5578
//
ID   Gypsy-42_CQ-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   AAWU01014973;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_CQ_;
KW   Gypsy-42_CQ-I; Gypsy-42_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 464-464 (2011).
XX
DR   GenBank; AAWU01014973; Positions   38420   38602.
XX
SQ   Sequence 183 BP; 54 A; 51 C; 32 G; 46 T; 0 other;
     tgttgcatac gggccttggg gcaaacaact gtactaaaaa atgtaacact aatacactca        60
     caaagaaatg aataaaacat caacgcgacg gttgtcgcgc tctctttcgc tgttcaccag       120
     tgcaacatac aagacgtgcg taattcttct tactcgactt gctgtccgat ctctccccac       180
     cca                                                                     183
//
ID   Gypsy-42_DAn-I repbase;    DNA;    INV; 4041 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_DAn_;
KW   Gypsy-42_DAn-LTR; Gypsy-42_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4041
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 317-317 (2012).
XX
DR   [2] (Consensus)
XX
CC   'ATTGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1452..2981
FT                 /product="Gypsy-42_DAn-I_1p"
FT                 /translation="MDLQSRKATVFNVRTETQNQFKGYASDTILNVTCVFE
FT                 APIGIRPGSELIASFFVIGKGRQSLLGRETATKLNVLRVGLPVNHIEEVTS
FT                 FPKWKGISVKLSIDPHVYPVKQPLRRIPVALEDKVNAKLEEARKLDIIEPV
FT                 SGPSPWISPVVIAFKENGEIRLCLDMRQANRAIRRENYPLPTFETFMTRLR
FT                 DAKLFSRLDLKDAYHQLELEESSRQITTFITHRGSFRYKRLMFGINAAPEI
FT                 FQRRLEGLLAPCSNVMNYIDDIIIFGKNEKEHDEAVRMVREIFGKYNVLLN
FT                 NKKCVWKTNKIKFLGHILTDKGIQVDPEKISAIGSFRAPRNKEETRSFLGL
FT                 VTYVGKFIPDLADLTEPLRLLLKKDQKFIWGAAEEKGFHKLKLALTKIPSL
FT                 SYFDPKYKTRLIADASPVALGAVLLQFKNDLTPNIIAFASRSLTDVEKRYS
FT                 QTEKESLALVWAVERFYFYLMGLKFELVTDHKPLEAIFKPTSKPPARIERW
FT                 LLRLQAYHFKIIYK"
XX
SQ   Sequence 4041 BP; 1380 A; 754 C; 967 G; 932 T; 8 other;
     ttggcgacga ggtaaactaa atggaattta aattaaagca gttaaagtta attataacca        60
     cgataaaaat tggataagat cgatcaagaa tcgaccacgt ttgaaaaaaa aagtaaagaa       120
     gaaaaggaaa aaaaaatcag tgaaacgaaa ccgttagttt tgcaccgcct cctccgtttg       180
     gtttcgttgg gttgcgagaa cgaaatcaag ggggaaggcg aggaagtgct aaacgaagct       240
     aaaggacaat cttgagaaaa gaggaaaaaa aaagaaataa aaaaaaaagg aaagagataa       300
     tattcggcaa aggtcgatta aggtcgaaac gaaaaaagaa ttatctgaca gnggtcagag       360
     ggagagcgcc caaactgaaa aaaaaagtaa agagagaaat agaacactat ctgacagtgg       420
     tcagagggag agccccaaaa accaaaaaaa aaaaaaaaaa actatctgac agtggtcaga       480
     gggagagtcc caaacaaata aaaaaaaaaa aaaaaacaaa aaaataaagt aanatatgat       540
     atatatatat ataaaataag atgaataggc tcgacagaag catatatgaa aaaatataaa       600
     taatatttgt ttcgtcctcg ttgttctcag gtgcagcatt agttgtgatg gctgaaaaca       660
     ttataaaacc ttttttatgt gagaatttgg aaaagtccgt tcttcgtaga gaatgggaga       720
     actggcttcg agctttccaa atatatttgg aggtggatga gattaagtcc actacaagga       780
     agagaacgaa gttgctgcat ttagggggca tacaattgca aacggttgcg tatgcacttc       840
     cgggggctat agtagaatat gatgaagaag acgataatga tgtttttgcc acactagtcg       900
     ataaattaac aatatacttc tcaccaaaac aaaattcgac gtttgagcga cacctgttta       960
     ggaaaatatc acctgacgaa ggagaggatt ttggcaagtt catcttacgg ctgcgacaac      1020
     aaattcggaa atgtagtttc ggttcaacga aagcggaaat ggaggaaata tgtttgaaag      1080
     ataagatcat tgatacttgg gctagttcgg aattaaaaaa gaagctgtta ggnaaggaac      1140
     atacgttagg ggaagtcatc gaagcgtgcc aggtcgacga agagatcagt aagcagtccc      1200
     ggttaatgct atcgangccg gtcccggaga ctattaacaa aatctcagac tggaaaacgc      1260
     gacaaagtaa taatggcgat tgtggtagat gtgggcggtc gggtcataaa gaggatagcc      1320
     ctgcatgtcc cgcacgactt agtaaatgta accgatgctc ccgtntgggc cattttggcc      1380
     ggaaatgccg aacggttttg aaacgtccat acccgcaatc gtacgttaat cttatatcgc      1440
     aggacgattg gatggatctt cagtcgagga aagcaactgt tttcaatgtg cgcacagaga      1500
     cccaaaacca atttaaggga tatgcctcag acacaatttt aaacgtcact tgtgtttttg      1560
     aggcaccaat agggatcagg ccagggtcag agctgattgc ctcctttttc gtaataggaa      1620
     agggacgtca atcactactt ggacgggaaa cggcaactaa gttaaatgtc ctgcgagtag      1680
     ggttaccggt aaatcacatt gaagaagtca cgtcgtttcc caagtggaag ggaattagtg      1740
     taaaactgtc aatagatcca catgtttacc cagtgaaaca acctttgaga cgcattcccg      1800
     tcgcgctgga agataaagtc aacgccaagc tagaagaagc gcgcaagctg gatataatcg      1860
     aaccggttag tggccccagt ccttggatat cacccgtagt gatagcattt aaagagaacg      1920
     gcgaaatccg actgtgcttg gatatgagac aggcaaatcg ggcgatccgc agggagaatt      1980
     acccgttacc tactttcgaa acttttatga ccaggttgag ggatgcaaag ttgttttcac      2040
     ggttggatct caaagacgcg taccaccaat tagaactaga ggagtcaagt agacaaataa      2100
     caaccttcat aacacatcgg gggtcgttca gatacaaaag attgatgttt ggcataaacg      2160
     cagctccaga aatttttcaa cgacgcctcg aagggctctt ggcgccatgc tccaacgtca      2220
     tgaactatat cgacgacata atcatttttg ggaaaaatga aaaagagcac gatgaagcgg      2280
     tcagaatggt tcgcgagatt tttggaaaat acaatgtact tttaaacaac aaaaagtgtg      2340
     tttggaagac gaacaagata aaattcctgg gtcacatctt gacagacaaa ggaattcaag      2400
     tagatcctga gaaaatatcg gcgattggtt cgtttcgagc tcccagaaac aaagaagaaa      2460
     cgcgtagttt cttggggctg gtcacgtacg ttgggaagtt tattccagac ctggcggatc      2520
     taacggaacc gttacgcttg ttgttaaaga aggatcaaaa gtttatttgg ggagctgctg      2580
     aagaaaaagg gttccacaag ttaaagttag cgctaactaa gattccgagt ctctcatact      2640
     ttgaccctaa atataaaact cgactgatag ctgatgcaag tcctgttgct ttgggagcag      2700
     tactactcca atttaaaaat gacctcaccc caaatatcat cgcttttgct agtcgtagcc      2760
     taacggatgt agagaaacgc tactctcaaa ctgagaaaga gagtttggct ttggtctggg      2820
     cagtggagag gttctatttt tacctaatgg gcctaaagtt cgaactggtg acggaccata      2880
     agccactaga agcgattttt aagcctacat ccaaacctcc agcgcgtatt gagagatggc      2940
     tcctacgcct tcaggcatac catttcaaaa taatctataa ancgggcaag gaaaatatag      3000
     ctgattgttt atcccgtttg tgtgagggag gaccgtctat ttcttatgac attaaaggcg      3060
     aacacagcat actgcgggtt attgagaatg ccgcacncac actaatagct ntatccgaaa      3120
     ttgccgaaaa gagcgctaag gatgaagaaa tcgtcgacgc aatgatgtgc cttcaacagg      3180
     gttcatggga gcctgcaact tctaataaac tgtacccttt tcgacatgaa ttgacaaaca      3240
     ttggaaccat catgctgaga ggagtgcgca ttgtcatccc cacgacacta aggcggacgg      3300
     tgttggtgct agcccatgaa ggccacccgg gcgaatcggc aatgaagcgg cgactacgaa      3360
     ctaaggtatg gtggccccaa attgacatgg acactgagaa atttgtgaag gattgtctag      3420
     actgcatctt agtatcccag gcgataagtc caccgccaat gaagagaaca gagtttccaa      3480
     atgggccgtg gctgtcagtc gctacggatc tactagggcc atttcccaat aatgaataca      3540
     tattagttct aatagactat tactctaggt acatggagtt taagtttctg cgctcaataa      3600
     catcacaaaa caacttttct gccgattcag cagaaaagga tagagattgc gtaaataaag      3660
     agaaaggtag ggaaatggca gacaaaagaa ggggagcaaa ggaagtaaac gtaaacgttg      3720
     gagacaaagt ggtccttaag aatgtagttt ttccacacaa actaacacct aacttcgaca      3780
     ccacagaata tgaggtggtg aaaaggacag gtgatctagt tcaagtagta ggggaaggca      3840
     gaacgctgat gaggaacgtt agtcacctta agaaggttcc caaagcaaaa gaatcacccg      3900
     aggacatcga tacgaactcc gtgacagatc ctgctgcgga ccaagtttca gtttcagtac      3960
     caaccaagca gcaaacccct ggaaggaagg acgaatctaa cccggaggga ttaaaactga      4020
     agctcgtgag gaaggaaggg a                                                4041
//
ID   Gypsy-42_DAn-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_DAn_;
KW   Gypsy-42_DAn-LTR; Gypsy-42_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-204
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 318-318 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 204 BP; 53 A; 38 C; 53 G; 60 T; 0 other;
     tgtgggaacc ggcagcgaga tgctaagcca gcattgatat ctttcaagag agcggcgctc        60
     tcctctctat gactctctct ctattcttag ttgtatcgag tttagtttta agttggcact       120
     cgtggcgatc ggagagtgca aataaagaac attgtaaaaa gcctaattgt gcgtgtaaat       180
     taatggaagc ggtgcggtgt taca                                              204
//
ID   Gypsy-42_DEl-I repbase;    DNA;    INV; 6812 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6812
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 482-482 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(641..1948,1912..3780,3581..5002,5255..6487)
FT                 /product="Gypsy-42_DEl-I_1p"
FT                 /note="retropepsin, reverse trnascriptase,
FT                 ribonuclease H, integrase and envelope protein."
FT                 /translation="MSVREIEELLDRFQKLNTAESSQQNSSSMALTSEQLK
FT                 SIIEGAVASALAAQEKSFEKKLQDVQKRLGGVNIGTPEVETYKDAEIIIGI
FT                 ACCETLDIMKSLPDFEGKNETYVSWRKAAHTAYKVFEKYDGSSKHYQALGI
FT                 LRNKIKGSADMVLSSFDTPLNFKAIINRLDFTYADKRPIYLIEQEMSTLRQ
FT                 GNMTLLQYYDEVEKKLTLLINKTIMTYDNTVAASLNEKYRADALRVFISGT
FT                 RKSLSDVLFSARPTDLPSALALAQEVDANHERYMFASSFARSTEEKHQRAE
FT                 QRSATTDAKFNPNGKNPHFNRIPPRQPPRQDPTQPMEVDPSLSRFRQPTQN
FT                 QQSGPFSRQIQNTYQNIQPNGNNNQGQTIKRPNSSSARYTGPKHQRINHLA
FT                 VENDPPNDEYPAVAEEECENIDDDLVEYDEINFLGITPCSHSNKFFRHNSL
FT                 LPFIERDIAGRKIKLLIDTGASKNYIKPMKELKNVIFVNKPFSIKSIHGRN
FT                 TINKKCIMHLFNTNTTFFLLPNLTTFDGIIGLDLLKKTDVVLDLREKKLIT
FT                 NSSSEEIKFLKCADVNFTKVEDIVVPQEILEKFQEMLGNRTGVFAEPNEAL
FT                 PYNTNIIGTIRTENEDPIYSKLYPYPMGVSDFVNTETQALLRDGIIRPSRS
FT                 PYNNPVWVVDKKGTDEQGNTKKRLVIDFRKLNLKTIDDKYPIPNVVFILAN
FT                 LGKAKYFTTLDLKSGFHQILLAENDREKTAFSVGNGKYEFCRLPFGLKNAP
FT                 SIFQRAIDDVLREQIGKSCYVYVDDVIIFSENMHEHVKHIAWVLDKLYEAN
FT                 MRVSREKSNFFKENVEYLGFVVSRGGIRTCPNKVDAIRNYEQPTTLFNVRS
FT                 FLGLASYYRCFIKDFASIAKPISDILKGENGKVSAGQSKKIPVNFDENQRQ
FT                 AFEKLKSVLASENVMLLYPNYKKAFDLTTDASSFGLGAVLSQDGKPITMIS
FT                 RTLKDRELNFATNERELLAIVWALKSLRNYLYGVKNLNIFTDHQPLTFAVS
FT                 DRNPNAKIKRWKAFIDEHNAQIFYKPGKENYVTVPTAHPRARGGCPVRYCH
FT                 NTTFLLTISHLLSPSQIAIQTQKLSAGKLSLTSTTPKFFISQERRTTSLSR
FT                 QHIHALEEDAQSDIATIHSELSLTYTIEKTDKPVNCFRNQIIIEESRTASV
FT                 RTVIMFGEKTRHLLYFSDRETLIQRVCDVVKKDVVNTILCELPVLAFIQHK
FT                 LIETFPTTTFRYTNRLVTDILDKNEQKEITVSEHNRAHRAAQENVKQILQD
FT                 YFFPKMTHMANEVVANCKICQKAKYDRHPQKQILGETPIPSYAGEILHIDI
FT                 FSTDKKYFLTCVDKFSKFSIVQPIASRTIADVQTAILQLINFYRRPKTIYC
FT                 DNEPSIKSETIRSLLSNRFNVQIVNAPPLHSTSNGQVERFHSTLTEIARCL
FT                 KIERGIEETVELLLLAAIEYNRTIHSVTNKRPIDIIHSSTIKLNAEIRDKV
FT                 SNAQNIQLQRLNKTRQDRNFQVGDKVLVKSNKRLGNKLSNLYTEETIEADL
FT                 GTTVLIKGRVVHKDNLRNSHRYSNVHHRHAGSINLLGTALKIVAGTPDFDD
FT                 FEKIKFTQKELIESENRQININTKTQEQINILTNTVNILVKNAKVEQINTE
FT                 NLYEKLLSRNRIIISELEALMLSVTLAKIGIINPAILDSNDLQNLINEHST
FT                 NVTVTDLMEVAQIKVLLNNNFLHFILKYPKPYVACKKIILHPVENNGTIIN
FT                 FAEDNTIADCGNKIMPIGNCSTALTTTFCREMPYTTCAQQLHSGGNAHCST
FT                 RTSHLEHLTIIDDGIIILNDGTATINGQLVTGTFLITFEDEVKINNTVYQN
FT                 LKSYVKKSPAPAASTVLNITGHQEILSLPYLQKLNMKNLRYIGEIEKGLET
FT                 RPIISGVATIAFLVTCFTIYKLYQRCQRDQRQRDLQVIIDSFKKSEDVLHL
FT                 SKGGVNTVSQQHGSSQADHA"
XX
SQ   Sequence 6812 BP; 2521 A; 1395 C; 1240 G; 1656 T; 0 other;
     acttctaggg catagggcta gctttcgtta taagaattat tgtacttagc agttagttga        60
     attttggaaa taaaccgtga cggtcaaacc tcgcaattac caagtcttct cattcgtaca       120
     gtacagtgcg tcttaaaata aatccttaaa caggacttat aattaattgg cacccaacgc       180
     gtcgtaagac cctcgacccg tgttaaataa aaaaacgcgt cgtaagaccc tcgacccgtg       240
     taaaataaaa aaacgcgatc gtaagaccct cgattcaacg ttaaaataaa aacataaaac       300
     aaatatttaa aaaacgcgtt cgattcgtaa aaaaaaagaa aaaacaacaa caaatcaacc       360
     aaataaaaac aaccaggaac gactacaaga gcgaaactga attaaaagaa ggaagacacc       420
     gacagcggca acaacattta gttttataat taaataaaaa ccatgtaagt agagtgttca       480
     ttgatattcc cactattttc aaattgcaaa atattttaaa aatattaaaa aagtgatttt       540
     ctaagagtct cagtcaaaag taaaacaagt tcggaaacct tttttagaaa aaattaaata       600
     cgaaaggaac aaaattcttt gttctttgtg ttaaaatcat atgagcgtta gagagataga       660
     agaattatta gacagatttc aaaaactaaa taccgcggaa agttcacaac aaaatagttc       720
     aagcatggca ttgaccagtg aacaattaaa atccattata gaaggcgcag ttgcgagcgc       780
     acttgccgcg caagaaaaga gctttgagaa aaaattacaa gatgttcaga agcgattagg       840
     cggtgtaaat atcggcacac cagaagtaga aacgtataag gatgccgaaa tcataatagg       900
     tatcgcttgc tgcgaaacgt tagatattat gaagtccctg ccggactttg agggaaagaa       960
     tgagacatac gtctcttgga ggaaagcggc gcataccgcc tataaagtat ttgaaaaata      1020
     tgatggtagt tccaagcact accaagcctt aggcattctc cgaaacaaaa taaaaggctc      1080
     agccgatatg gttctttcgt cgttcgacac gcctttaaat tttaaagcta ttattaacag      1140
     gcttgacttt acatacgcgg acaaacgacc gatatattta atagaacagg agatgtcaac      1200
     actccgtcaa ggaaacatga cacttctgca gtactatgac gaagtagaga aaaaactgac      1260
     tctgctaata aacaaaacaa ttatgaccta cgacaacacg gtagctgcct cactgaacga      1320
     aaaatacaga gcggatgcgc tacgagtatt tatttcgggc acaaggaaat cgcttagcga      1380
     cgttcttttt tcggcaagac caaccgatct tccttccgct ttagcattag cccaagaagt      1440
     agacgctaat catgagcgat acatgttcgc aagtagtttt gcacgtagca cggaggaaaa      1500
     acaccaaagg gctgaacaaa gaagtgcaac gacagacgct aagtttaacc caaatggtaa      1560
     aaacccccac tttaatagaa taccaccaag acaaccaccc agacaggatc cgacacaacc      1620
     aatggaagtt gatccctcat tatcccgttt tagacaacca acccaaaacc aacaaagtgg      1680
     accgttttca aggcaaattc aaaacactta ccaaaatatt caacccaacg gtaacaataa      1740
     tcaggggcag acgattaaaa ggcccaatag tagtagcgct agatatacag gaccaaaaca      1800
     ccagaggata aaccatctgg ctgtagaaaa cgacccacca aatgatgaat acccggcagt      1860
     agccgaagag gaatgtgaga acatcgacga tgacctagta gaatacgatg aaataaattt      1920
     tttaggcata actccctgct cccattcata gaaagggata tcgcagggag aaaaataaaa      1980
     cttttaattg acacaggggc ttccaagaat tacatcaaac ctatgaaaga attaaaaaac      2040
     gttattttcg taaataaacc attctctata aaatcaatcc atggtcgcaa cacaataaac      2100
     aaaaaatgta taatgcacct ttttaataca aatacaacat ttttcttgct accaaactta      2160
     acaacgtttg atggaataat tggactggac ctactaaaaa aaactgacgt cgtacttgat      2220
     ctaagagaaa aaaagttaat aactaatagc agttcggagg aaattaaatt tttgaagtgt      2280
     gcagatgtta attttacaaa agttgaggat atagtggtac cacaggaaat attggaaaaa      2340
     tttcaggaaa tgttaggaaa ccgtacgggt gtatttgcag agccaaacga agcgctgccg      2400
     tacaatacta acattattgg tactatccgg acagaaaatg aagatccgat atattcaaaa      2460
     ttgtacccat acccaatggg cgtgtccgac tttgtaaata cagaaacaca agcgttatta      2520
     cgagacggca taatccgacc atctcggtct ccatataaca accctgtttg ggttgtagat      2580
     aaaaaaggga ccgatgaaca gggaaacaca aaaaaacgcc tagtaataga cttcagaaag      2640
     cttaatttga agacaataga tgacaaatac cctatcccga acgtagtttt tatcttggca      2700
     aatttaggaa aggcaaagta ctttaccaca ttagatttaa agtctggttt tcaccagata      2760
     ctactcgccg aaaacgacag agaaaaaacg gctttttcag taggaaatgg gaaatatgag      2820
     ttctgtagac taccctttgg attgaagaat gcacccagca tttttcagag agccattgac      2880
     gatgtgctca gggaacaaat agggaaatca tgctatgtct acgtcgacga cgtaattatt      2940
     ttttcagaaa atatgcacga gcatgtgaaa cacatagcat gggtcttaga caaattatat      3000
     gaggccaaca tgagagtttc gcgcgagaaa tctaattttt ttaaagaaaa tgtagagtat      3060
     ttaggtttcg tggtttcacg cggaggcata agaacatgcc ctaacaaagt agacgcaatc      3120
     cgtaactacg aacaaccgac cacactattt aatgtcaggt catttctcgg actagctagt      3180
     tactataggt gttttattaa agactttgca tctattgcaa aacctataag tgacatccta      3240
     aaaggagaaa atggcaaggt tagtgcagga caatcaaaga aaatacctgt taacttcgac      3300
     gaaaatcaac gtcaggcatt tgaaaaactt aagagtgttc tcgcgtctga aaacgtaatg      3360
     ctattatatc caaattacaa aaaagcgttc gacttgacga cagatgcttc gtcttttggt      3420
     ttgggtgcag tcttgtcaca ggacggaaaa cctataacca tgatatcacg aactttaaag      3480
     gacagggaac taaattttgc aaccaacgaa agggagttat tagcaatagt atgggcctta      3540
     aaaagcctca ggaattatct atacggcgtg aaaaatttaa acatttttac tgaccatcag      3600
     ccacttactt tcgccgtctc agatcgcaat ccaaacgcaa aaattaagcg ctggaaagct      3660
     ttcattgacg agcacaacgc ccaaattttt tataagccag gaaaggagaa ctacgtcact      3720
     gtcccgacag cacatccacg cgctagagga ggatgcccag tcagatattg ccacaataca      3780
     tagcgagcta tcactcacct acactattga aaaaacagac aaaccggtca actgctttcg      3840
     gaaccagata atcatagaag aaagcagaac tgcttcagtt agaacggtca ttatgtttgg      3900
     tgaaaaaact cgacatctct tatatttctc ggatagagaa acacttatac agagagtatg      3960
     cgatgtggtc aaaaaagacg tagtcaatac aattttatgc gaactaccag tactggcatt      4020
     tatccaacat aagttaatag aaactttccc gacaaccaca ttccgttaca cgaaccgttt      4080
     ggtgactgac atcctagaca aaaatgagca aaaagaaatt acggtgtcag aacataacag      4140
     ggctcatagg gccgctcaag aaaacgtgaa acagattttg caagactatt tttttcccaa      4200
     aatgactcat atggctaatg aggtggtcgc aaattgtaaa atatgccaga aggcaaaata      4260
     cgatagacac cctcagaaac agattctcgg agaaacaccc attccctcgt acgcaggcga      4320
     aatcctacac attgacatat tttcaacaga caaaaaatac tttttaactt gcgtagacaa      4380
     attttcaaaa ttttcaattg tccaaccaat cgcttccaga accattgcag acgtgcaaac      4440
     cgcgatttta caacttatta atttctaccg gcgaccgaaa acaatatatt gcgataatga      4500
     gccctctata aaatccgaaa caattaggtc tcttttaagc aaccggttta acgtgcaaat      4560
     cgttaatgca ccgccgcttc acagtacatc gaatggacaa gtggaaagat tccacagtac      4620
     actaacagaa atagcacggt gtttaaaaat cgaaagaggt attgaggaaa cggttgaatt      4680
     actactcctc gcggctatag aatacaatag aacaattcac tctgtaacaa ataaacgacc      4740
     catcgacata attcattcat caaccataaa gcttaacgca gaaattagag ataaagtctc      4800
     aaatgcacag aacatccaac tacaaagatt aaataaaact agacaagaca gaaattttca      4860
     agtaggagac aaagttctcg taaaatcaaa taagaggttg ggaaacaaac tttccaattt      4920
     gtacaccgag gaaaccatag aagcagactt ggggaccaca gtcttaataa aagggagggt      4980
     ggtccataag gacaatttga ggtaattaaa taaagtttat tttctttctt ttattttcaa      5040
     cacgccaggt ttggacatct tcttctcgcc gtatcaataa cacaaaatca ccgattaccg      5100
     gcctcaatta catccaatca tagacggaga ctacctaaaa cattgacaat ttaacaatgt      5160
     attcggagat agtaaaggac acggaagaaa tggaagaaca tttccctcgg tcacatatga      5220
     ggcagatatt agactcggat ttacgacaca ttaaaactct catagataca gtaatgttca      5280
     ccatagacac gccggaagca tcaacttatt aggcaccgca ttaaaaatcg tagccggtac      5340
     tccagatttc gatgacttcg agaaaattaa attcacgcag aaagaactca tagaatcaga      5400
     aaataggcag ataaacatta acacaaagac ccaggaacaa ataaatatcc taacaaacac      5460
     agtaaacatt ttagtaaaaa acgcaaaagt agaacagata aatacagaaa atttgtatga      5520
     aaaattgcta tcaagaaaca gaataattat ttccgaactc gaagccttaa tgttgtcagt      5580
     tacacttgcg aaaattggaa taatcaaccc cgcaatttta gattcaaatg atttacaaaa      5640
     tttaatcaat gaacattcta caaatgttac tgttactgat ctaatggaag ttgctcaaat      5700
     taaagtttta ttaaataata attttttaca ctttatatta aaatatccta agccgtatgt      5760
     agcttgtaag aagataatct tgcaccccgt tgaaaacaac ggcactatta ttaattttgc      5820
     tgaagacaat actatagctg actgcggtaa caaaatcatg ccgattggaa actgcagcac      5880
     cgcccttaca acaacatttt gcagagaaat gccctacaca acctgcgcac agcaacttca      5940
     ctcaggaggc aacgcacact gctcgactcg caccagccac cttgaacacc taacaatcat      6000
     cgatgatggc atcatcattc ttaatgacgg aacagctacg atcaatggac aactggtaac      6060
     cggaacgttc ctcattacat tcgaagacga ggtaaaaata aataacaccg tataccaaaa      6120
     cttgaagagc tacgttaaga agtcaccagc cccagctgca tcaacagtcc ttaacattac      6180
     gggccatcaa gaaatactga gcttaccata cttacaaaaa ttaaatatga aaaacctacg      6240
     ttacattggc gaaatagaaa agggactgga aacacggcct ataatatctg gagtggccac      6300
     gatcgccttc ttggtcacct gctttactat ttacaagctc taccaaagat gccagcgaga      6360
     ccaacgtcag cgtgaccttc aagttatcat tgacagcttc aagaagtccg aggacgtcct      6420
     tcatctaagt aagggaggag ttaacacggt ttcacagcaa cacggaagtt cccaagctga      6480
     tcatgcataa ccgactaaaa taatgcaaga ccagcgacac ctacggatgt tgcacaacga      6540
     cgtcgccaaa atcccaagct tcggtcaggc aatcagcgca atgcactccg atgcaacggc      6600
     ggctacccag caccatgcat gggcagccgg gtcagcactt ctagggcata gggctagctt      6660
     tcgttataag aattattgta cttagcagtt agttgaattt tggaaataaa ccgtgacggt      6720
     caaacctcgc aattaccaag tcttctcatt cgtacagtac agtgcgtctt aaaataaatc      6780
     cttaaacagg acttataatt aatttatata ta                                    6812
//
ID   Gypsy-42_DWil-I repbase;    DNA;    INV; 5437 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_DWil_;
KW   Gypsy-42_DWil-LTR; Gypsy-42_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5437
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1853-1853 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3021-3548] - Reverse transcriptase
CC   Positions [4563-5039] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1380..5435
FT                 /product="Gypsy-42_DWil-I_1p"
FT                 /translation="MDRGEILTLRIEELRIKLRELGLETTGLKAELQSRLL
FT                 AHYDLIETENDGQEADFASARTIREVPNTDGQRSWFTLKDVEGSVSEFCGL
FT                 GSIDVVQWTRELEECALTVQWSQLQLFVYAKQLLKGAALSFIRSKRDICSW
FT                 ESLKVALKNEFGVKVSSAEVHRRLSNRQLKRGENLYEFLYSLMEIAKPIDL
FT                 DDESLIEYFVEGIPDPRANKALLYQARTVDGLKVQIETYLKSYDPRKSSKK
FT                 TTLESSFHKQGRDNREKSSITKGDRKCFKCGDPSHMMRDCNKKTFTCFKCG
FT                 KTGHRSFECKGKDTTKVESTNVVDDKLVKASGKFTDSGLELKEVTYKSIKF
FT                 NGLIDTGANLSLIRKSVFVELGIKSLTGYSKSLTGIGGSHVMTFGSFSISV
FT                 KIDGIEMEVEFHIVPDEDMAYEAILGRTILDHVDLVVTKKGTKFVSIKRKE
FT                 SLCNANKSCAELFKEFESMCMHSAEQNKVEIKSDLSHISAEIASEVKKLIK
FT                 SYKPIRNTNTPIEMKIVLTDELPVYQHPRRLAESDQKIVDSTVQEWLEEKI
FT                 IRPSFSEYASPVVLVTKKNGKKRLCCDYRKLNEKVVRDNFPMPQMDTVLEK
FT                 LQSALVYTTLDLTNGFFHVPVEEKSQKYTAFVTQNGQYEFLYVPFGISNSP
FT                 AVFTRFIMAVMRESVKNGDAVVYMDDIIIPSVSVNDGLIKLKRVLKIAAEN
FT                 GLRINWEKCQILQSKVNFLGYIVENGSIKPSKEKTDAVSRFPIPHDKKSVQ
FT                 RFLGLTSYFRRFIEGYAVTAKPLTDILRKDNKFEFKELQMVAFEQLKLALI
FT                 KGPVLKLYNPKLETEIHADASKHGFGAALLQKDSEDGLFHPVQYMSRKTKP
FT                 CEEKYDSYELEVLAVIGALIKWRVYVLGLRFKIVTDCNAFTMTMKKKEVPL
FT                 RVARWAMYLQDFDYQIEHRSGSKMRHVDALSRLSCFLLTDTITHRLREAQL
FT                 SDDWTKSIRSLVQEKGYEDFYIENEILLKDPNRELIVVPSQMEKEIIQIAH
FT                 KQGHFGARKTQDIVEKSYYIPKLKEKVARVVECCVECLIVNAKTGKKEGYL
FT                 MPISKGDQPLMTYHIDHVGPMEVTTKRYNHILVIVDGFSKFVWLYPTRGTG
FT                 VDEVLSCLEKQAIIFGNPVRIISDRGAAFTSNAFKEYCIRQDIQHLLIATG
FT                 VPRGNGQVERMHKIIVPMISKLSQENEGNWYKYVGRVQQLVNNTAPRSTRV
FT                 TPFKILTGIEMRSPDDPEIRKLITDSLIEELDCGRDEIRAEARKNINEIQQ
FT                 EMKRTFDKNRKWERKYNLNELVAIKRTQYGTGLKLRGKYLGPYKVTKVNRH
FT                 GRYDVEKVGDGEGPCKTSTVAEFMKPWLGSFGSNDLSGQP"
XX
SQ   Sequence 5437 BP; 1845 A; 845 C; 1381 G; 1364 T; 2 other;
     aactgggggc tcaaccgaga tttctggccc aagacaataa gtgaaatttg tgtgtgtgtg        60
     tgaagttcgc aagtgaacag aaaattgtta aaattgcatg cattaacgtg taatacatat       120
     acaaactcaa ggttgttggc gaacgaattt cacaagaagc aaccactaca agttcaaaaa       180
     atagtggaag ttggtgtgac tgtacgagag gcgacgagtg gacggtgaga cggtgagcgg       240
     tcggacgacg caagaagagc gtcactaaga attttggcgc cgtttaggca aaaagtcggc       300
     gactgaagtt gagagcggca cgagaacggt ggtgactcga gaggaaaaga gagagcagac       360
     agcagacacg aagttgatga taaccagtgt ttactgtgga agcagacagc ggacacgaag       420
     ttgatgataa ccagtgttca ctgtggaagc agacagacga gaagcagaca gcagacacga       480
     agttgatgat aaccagtgtt tactgtggaa gcagacagcg gacacgaagt tgatgataac       540
     tagtgttcac tgtggaagca gacagacgga gagagcagac agcggacacg aagttgatga       600
     taactagtgt tcactgtgga agcagacaga cagagagagc agacagcggg cacgaagttg       660
     atgataacca gtgttcactg tggaagcaga cagacggaga gagcagacag agagcacgaa       720
     gttgatgata accggtgttc actgtggaag cggaaaacca aaagagagcg gacaacacaa       780
     accgttacaa gaagcagacg acgacgacaa gtccaaacga gaaggcagca gacacgaagt       840
     tgagataatt ggtgtggaag cagacaaaga gagcggacaa cacaaaccgt tacaagaagc       900
     agacgacgac gacaagtcca aacgagaagg cagcagacac gaagttgaga caattggtgt       960
     ggaagcagac aaagagagac caagagaacg agtggaaaac agccgagtga gtagcgacag      1020
     cagagcgagt ggcaacagag agcgaaccga acatctgagt gagttgctac agcgatattg      1080
     agtggttcca tagagcagga cgactatagt tgggtgagct gtttaattat tgtcttgagt      1140
     gtgagttact ttgcttgcac gacgaaacca gaccggtggc agaaatattg acgaaattga      1200
     tgcgagctgc asagagcaca tttctaagaa tcgtctgagt ttaaccataa cctaccacaa      1260
     tttgacctac attaacatag tgtgtaaatt ttgctaagtc gtaacaaatt tgattgattg      1320
     atactaacta tacattaata tagcgaactt gttaagcatt atacctgtaa ttgtgtgaaa      1380
     tggatcgagg tgagattcta actttgcgta ttgaagagtt gcgcattaaa ttgagagagt      1440
     tagggctaga gactacgggc cttaaagctg agctgcaatc gcgtctactc gctcattacg      1500
     atctaataga aactgaaaat gacgggcagg aggcagattt cgcctcggct agaacaattc      1560
     gagaagtccc gaacacagat gggcaaaggt catggttcac actaaaagat gtggagggaa      1620
     gcgtttccga gttttgcggt ttaggttcga ttgacgttgt acaatggact agggagctag      1680
     aagaatgcgc tttaaccgta cagtggagtc agttacagct ttttgtgtat gcaaaacaat      1740
     tgttaaaggg agctgcattg tcgtttatac gtagtaagag agatatttgt agttgggagt      1800
     ccctgaaagt agctttgaaa aacgaattcg gagtaaaggt ttcatcagcc gaagttcata      1860
     gaagactaag caatcgacag ttgaagagag gtgagaattt gtatgagttt ttgtattcgt      1920
     taatggaaat cgcaaagccg atcgatttgg atgacgaaag tttaatcgag tatttcgtag      1980
     aaggtatacc agacccgaga gcaaataagg cattattgta tcaagccaga acagtggatg      2040
     ggttgaaagt tcaaatagag acgtacttaa aatcctatga tcctaggaag tcgtcaaaga      2100
     aaacaacatt ggagtcatct tttcacaagc aaggtagaga taatagagag aaaagttcga      2160
     taacaaaagg tgatcgcaaa tgttttaagt gtggtgatcc ttcacacatg atgagagact      2220
     gtaacaagaa aacgtttact tgttttaaat gtggcaaaac aggccatcgc tcgtttgaat      2280
     gtaagggaaa agataccacc aaagttgaaa gtaccaatgt tgtagatgat aaattagtaa      2340
     aagcatcagg taaatttact gattcgggtt tggagttgaa agaagtaact tataagtcga      2400
     ttaagttcaa cggtctaatt gatacaggag caaatttgag tctcatacgt aaaagcgtgt      2460
     ttgtcgaact tggaattaaa tcattaacag gatattcgaa gagccttaca ggcattggtg      2520
     gaagtcatgt gatgaccttt ggtagtttta gcataagtgt caagatagat ggcattgaga      2580
     tggaagtcga gtttcatatc gttcctgatg aagacatggc atatgaggca attttgggta      2640
     gaaccatatt agatcacgtc gatttggttg ttacaaagaa aggtacaaag tttgtgagca      2700
     tcaagagaaa agaatcactg tgtaacgcga ataaatcttg tgctgagttg tttaaggaat      2760
     ttgaaagtat gtgtatgcac agtgcagaac agaataaagt ggaaatcaag agtgacttgt      2820
     cgcatatcag tgcagaaatc gctagtgaag tcaagaagtt gattaaaagt tacaaaccta      2880
     ttagaaatac aaacactcct atcgaaatga agattgtact aacagatgag ttgccagttt      2940
     atcagcatcc aaggcgtcta gcagagtctg atcagaaaat tgttgatagt acagtacaag      3000
     aatggttgga ggagaagata ataaggccaa gtttttccga atatgcttcg cctgttgtac      3060
     ttgtaacaaa gaagaatggg aaaaagcgtt tgtgctgcga ttacagaaag ctaaatgaga      3120
     aagtggtccg agataatttt cctatgccac agatggatac cgtattagaa aaacttcaaa      3180
     gtgcgttagt ttatactact ctagatctaa caaacgggtt tttccatgtt cctgttgagg      3240
     aaaaatctca gaagtacaca gcattcgtaa ctcagaatgg tcagtatgaa ttcctatatg      3300
     taccattcgg aatttccaac tctccagcag tttttacaag atttataatg gcagtaatga      3360
     gagaatcggt gaagaatgga gatgcagtgg tgtatatgga cgatataatt ataccaagtg      3420
     ttagcgtgaa tgatggtcta attaaactta aaagagtgtt gaagatagct gcggaaaatg      3480
     ggttgagaat aaactgggag aaatgtcaga tactgcagag taaagtaaat tttttgggct      3540
     atatagttga aaatggaagt attaagccaa gtaaggagaa gactgatgcc gtttcaagat      3600
     tcccgatccc acatgacaag aagtcagttc aamgattttt ggggttaaca tcgtatttcc      3660
     gtagatttat cgaaggatac gcagtaacag ctaagccctt gactgacatt ttgcgaaaag      3720
     acaacaagtt tgagtttaaa gaattgcaaa tggtagcgtt tgagcaattg aagttagcat      3780
     tgatcaaagg tcccgtttta aagttataca atcctaagct agagactgag attcacgctg      3840
     atgcctcgaa acacggtttc ggagctgcgc ttttacagaa agattcagaa gatggtttat      3900
     ttcatccggt acaatatatg agtcggaaaa ctaaaccttg cgaagagaag tatgattcgt      3960
     atgaacttga ggttttagca gttattggag cattaataaa gtggcgtgta tatgtgctag      4020
     gattgagatt taagattgtt acagattgta atgcgttcac gatgacaatg aaaaagaaag      4080
     aggttccgtt acgtgtagca cgttgggcaa tgtacctaca agatttcgat tatcagatcg      4140
     aacatcgttc aggttcaaag atgcggcatg tggatgcttt gagccgttta tcttgttttc      4200
     tgctaaccga caccataacc catagattga gggaagcaca gttgtcagat gattggacta      4260
     aatcgatcag gagtttagtt caggagaagg gatatgaaga tttttacatt gaaaatgaaa      4320
     tattgttaaa agaccccaat cgagaactta ttgtcgttcc ctcgcagatg gaaaaagaaa      4380
     taatacagat tgcacacaaa caaggacatt ttggagctag aaagactcag gatatcgttg      4440
     aaaaatcgta ttatattcca aaattaaaag aaaaggtagc ccgtgttgtt gagtgttgcg      4500
     tggaatgtct tattgttaat gccaaaaccg gtaaaaagga aggatatttg atgccaataa      4560
     gcaaaggaga tcagccattg atgacatatc acattgatca cgttggcccg atggaggtca      4620
     caacaaagcg ttacaatcat atacttgtta ttgttgatgg gttctctaag tttgtatggt      4680
     tgtatccgac tcgtggaaca ggagtcgatg aagtacttag ttgtcttgaa aagcaggcga      4740
     taatttttgg taacccggtg agaataattt ctgacagggg agcagctttc acatccaatg      4800
     cgtttaagga gtattgtatc agacaggata tacagcattt actgatagca acaggtgtac      4860
     cccgcggcaa cggccaagta gaaaggatgc ataagataat agttccaatg atttcaaagt      4920
     taagccaaga gaatgaggga aactggtaca agtatgttgg tcgtgtgcaa caactcgtta      4980
     ataatactgc tccaagaagt acaagagtta caccttttaa gattttgaca ggaatagaga      5040
     tgcgtagtcc tgatgatccc gaaataagaa agctgataac cgattcgtta atagaagaat      5100
     tagactgtgg tcgtgatgag attagagcgg aggctcgaaa gaatattaat gaaatacagc      5160
     aggaaatgaa aaggacgttt gacaaaaaca ggaaatggga aagaaaatac aatttaaacg      5220
     agttagtggc gattaaacgt acgcagtatg ggacaggtct aaagttgaga ggtaaatact      5280
     taggaccgta taaagtcacg aaggtgaata ggcacggtcg atacgacgtt gagaaagttg      5340
     gcgatggtga aggaccttgt aagacctcaa cagtggctga gttcatgaag ccttggctag      5400
     gatcattcgg gtcgaatgac ttgtcaggac agccgat                               5437
//
ID   Gypsy-42_DWil-LTR repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_DWil_;
KW   Gypsy-42_DWil-I; Gypsy-42_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-327
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1854-1854 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 327 BP; 125 A; 65 C; 60 G; 77 T; 0 other;
     tgtaggaaat gaagtgtcag gcgggcataa tcatggcaat cgggcagtag ctagtgagcg        60
     agacagaacg acacgcagcg gccgtaccta tctggtcgac tcactcattg gcaaataaag       120
     agaagcgttg attcaaaaag cactcgcaat cgtactctcg cctcgatcac atcgcgcacc       180
     caaattatca ctaaggccat ttaaataata taaaatatat gtattcttaa cacaaagaaa       240
     cattgttaat aatataagac taaataagga aatcacatcc tttaataata ttgtaataaa       300
     taaaccggga taaagtaaaa tcctaca                                           327
//
ID   Gypsy-42_LMi-I repbase;    DNA;    INV; 6283 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6283
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
SQ   Sequence 6283 BP; 1249 A; 2111 C; 1282 G; 1628 T; 13 other;
     ctggtgaccc caaagtcaag tgcaccatca tatcgcgcac gttgtgcagc ggcatccttt        60
     ttcgtgtgaa tttcgctgcg aaatacggga gtcattgtct cgccgtccac tacaatgact       120
     atgacagtgc cacctccgcc gggatttctc actgcatcaa cttcatcgcc gcaaattcag       180
     tgtcttccca tctctagtgc ttcgcatttt cattctcaga acgaatactc acaggacatg       240
     ttcgccacac tgagtgcttc tggtgctgcg aggaacttaa agactcaggc ctcggttcgc       300
     cgtttgtttt ttcaagtgtt tcctctacga acagtgttaa ttttgtccca caccacaact       360
     cgtgtgctca gaacgctcaa gttttgcaag gcacgaactt ctcgaactta caaaatttga       420
     atttcagact ggcaaccgcc ccaccaaatg tgtgtgtgta tccttccgcc aaccacgtgc       480
     tctgccagtg aggtgcggtt gcctccaatc attctatcag tgcttctgga cttggactcg       540
     cttctcaaag caccccccac ggtcctcaat tggacaattt tcacatgctt cgggcgcacc       600
     tttttctgcc cgcgcagccg acttggacta tgcaagcaat gtgtcggcca gtcttgtgca       660
     gtctacacca ccgagcgtgc ttagtgactc tccgatcagg tctgctcgtc ctgtcagtgg       720
     tgatttgaac ttcaattatt ctcaaggtac tggtgtgtcc tttgtgctcc ccgcatcacg       780
     tgatgcgtct gccgcatcgt gagttcaaca attgctcccg ctttatcaca ctgttgacac       840
     acaggaacat tctcggccgc acttgttcgt gcatccgccc gctttcatgg cacacaccgg       900
     tgcctcaact gcgccgggca tccacgtcat ctcgcctctt cctgccacaa ctcgcttgct       960
     catctttgag gctccgccgg ggacgacggc tgcatcgagt tctctcacaa tgcctcaaca      1020
     tgtctgcgtc aacccctcgg ctgatgttcc agaggcacca ccgtcgccgc cacctgggcg      1080
     ccttcccaag ctgccgcctt tctccttcga ggctcccacg acgtggttcg ccatcgctga      1140
     gcagatattt gaccactact cgcttgacga ttcagctcgc tacctatgcc ttatcacaca      1200
     tctccatgaa cacatcgact tgatctgcga cctagtgacc tctccccatc ggctgatcgg      1260
     tattccatcg ccaaacgaac tatccttgag agggttactc gcacccctga agacacgata      1320
     aggcacatca tccatgagga acacctgggt gagaagaagc catcacagct ctggcgccgc      1380
     ctccgccttc ttgtcaatga acatgatatg ccggactcca ccctcatggc tgtttggtcc      1440
     agtaaacttc cgctcgtggt ccagaccgcc ctcacataca acattctcca gcctccgagt      1500
     gaacgcatcc gcatcgcaga cagggtgtac gacgcttatc tgcatgaggc acgtcagccg      1560
     catctttcgt ccacgaccca gcccccgcag cactcacccg ctgctgggcg gggccgctca      1620
     cacaacaagg agccgcaggc aggaaaccag gcatgatgct cgcctgcacg cagaccaggt      1680
     gacagcttcg cgtctctgcc acgccctcca gcactccctg cgacagctcc tctgacaccg      1740
     atgatggact gcctctgctc atccgcttcc cgcaagagca ggctcctcat tatccttact      1800
     gttactacca cagccacttt ggtgatgcgg caaggaagtg tcgttcaccg tgtcttcacc      1860
     caaacgccga gtgcaggatg gtctaggcgc cgcctcctgc cctgacaagc acgggtgcct      1920
     acatgtgttt cattctgttt gtgacatttc cctcgtgtgg tcgtgcgtac ctacgtgact      1980
     gtgtctcaaa ctgcatgatt cctcattgac actggtgctg atgtatctct actacctact      2040
     tcgatggcca ctggccctct ccgccctcac agtgctacac ttcgtgctgt caatgccact      2100
     cagctgccgt gtgcgggttc aatgactttt actgtttgct tgtcaccgaa gtgtaaactc      2160
     tcktggaact ttttggtagc tgatgtgctg gaaccgattg tgggcatgga ttttttawct      2220
     caccataaac tctcccccca atgttgtgcg acgttcagtg ttccaccacc cctcaaacac      2280
     acattttcct tgtgctccgt cgagccctga ctctttctcc acttgtgcac cgactgtccg      2340
     tgagtgtttt cagacgattg awaagttcga caatctgttc tcaaagttgt gtcatgaaca      2400
     tgaacaagtg attaaactgt gccgtgagaa ggaagacatt gtccataagt gcttcgacac      2460
     cattaaacag tcagagtcgc tcttgtcaaa gtggtcgagc gaacgtgaac atgtgctccg      2520
     tctgtatcac gaaaatgaag actcacccgc cgcctcgcag atactgagtt gcagctggcg      2580
     tccgctctgc accaactgtc gtctctgcag tcactttgga aggactaccg ctccaaggtt      2640
     agtatgagtg ttacctccgt gagtgttccc agtgtcatcg cgcctgcatg cagtgttatt      2700
     agtgcttgtg acagttctcc cccccccccc ccgccactcg tacatggacg tttgcaaaca      2760
     aaacttggtt gccatgccaa cgccttgccc ggacgctctg cctgcgcggt gtcccactct      2820
     ggcggccact tctagcgcta cctcttcctc ttgtgcaccg cgatcgcctc ttgtttcacc      2880
     tgttcctgct ccactggtca agctgtctgc tactgcgatg cgcacgccat cacctgtcgc      2940
     agccgcccga ggaactttca cgcgacgcca tcttgctcca gtgcgactgt ggctcctcca      3000
     tgtgaacccg tggccagaac tgtaactatc ccggcgcctc ggcacacttc ggctgccatg      3060
     agcattgctg agccccccac ctcctctcat gctccacgtg actcgcactg tgccacgccc      3120
     tccctcccag tgcctcctca cccgtcacaa caaacggcga ccacgcatgt aaacaaagcc      3180
     ttcccgccgc ctcccacggt gtctcagtag tcacgaacgg cacggtacat aaactccgtc      3240
     ttattgatgg gcctcccatc tccagcaaac cgcgccgcct ttgcccagag aaattggctg      3300
     ccgtcaagga acaaatcgca gaacttttga aattgggtgt cattgagccc tcgtccagca      3360
     gcagctggtc atcgcccatt cacttagtgc ccaagcaaga cggctcttgg tgcatgtgtg      3420
     gggattaccg caggctcaat gcccgtaccc tcatggacaa ttatcctatt ccgaacattg      3480
     cagatttcac gcagactctg gcaggcgcaa aagtgttctc tgttgtkgac tgcaagcatg      3540
     cttaccacca gattcctatg gctcctgagg acattgaaaa gactgctatc actactccca      3600
     taggtttatt tcactaccgg ttcatgccat tcagtcttaa aaatgccact caaacttcgc      3660
     aacgttttat caatgagatt ctttttcccc tgaaattttg ctttgcatgc ctcgatgaca      3720
     tattagtgtt cagtgattcg tcgaggagaa caagaaacat ttacaaatcc ttcttgatac      3780
     tttggctgca gcggcattga acttaatgac agcaaacatc aactacatca atgctcgtgc      3840
     ttttccttgg tttcatgctt tctgccaatg ggataacgct gccccagaaa aattgattac      3900
     gtcagaaact taccacctcc ttcaaccttc aaagaattgc tcgcttcctt ggaaccatta      3960
     actattatcg acgcatttac ccggcacagc cgagcttcaa gccccactca ctgatgcctt      4020
     ggctggcgat cgacctgttc cctggacgga cgctatgtct tctgcattct ctgctctcaa      4080
     agacctactc gctcaagctg tcactatcgc tcaccctcat ccagatgctg aactttttat      4140
     taccacagat gtgagtgata ccgccattgg cgcaagttct gagccaatcc ctcgatggtg      4200
     tcacgtcccc tctgcagttt tttttaaaga aactcaacaa tgctcaaaag aaatactctg      4260
     ccttcgatcg agaactcttg gccgtctatg agtctatcaa acacttccac tctgccatag      4320
     acggtcactc cttttacgtt ctcaccgacc ataagcctct tgcggctgct atcaccaacc      4380
     ccccccccga cggacccccc tccccgcagg ttccgctatt tcgactacat ctctcaattc      4440
     accaccgatg tccactacat caagggtgcg gacaatgttg tggccgattt cctctcatgc      4500
     attgatgcca tttcgtctct cttagatctc tctcatcttg ccactcttca ggccgctgac      4560
     gatgacacaa tgcaactcat tcatgactct tcctcttctc tgcaacctat ttgcaccacc      4620
     ttccctggtg tgtcgggtga ggtttggtgt gatgaatcaa cgggcactct ccgcccctac      4680
     attcctcgct gcctcaggtg tgagatcttc aataaactgc ataatcttgc tcatcctggc      4740
     atcaaggcct ccaccaaatt agtcaccgac cgtttcgtct ggcgggacat gaggcagatt      4800
     gccaagcctg ggctcgtgcc tgtgttccct gtcaaagaag caaaattcag actcacacct      4860
     cccctcccct gggctctttt cctgtccctg ctggccgctt ccagcatgtt catattgacc      4920
     tagttggccc ccttcccccg gtcaatggtt ttcattacct cctcacttca attgatcgca      4980
     ccacccgctg ggctgaagct gcgcccctcc cgaatatcac tgcagagact gtcgcccatg      5040
     cattcgtgca ctctggattt cccgcttcgg ctgttatcac cactgaccag ggccggcagt      5100
     ttgaatcwgc tctattccaa aatttatgca acctttttgg aattaaacac atccacacca      5160
     cagcctacca ccctcaagga aatggtttag tcgaacgttg gcaccgcaca ctcaaagtgg      5220
     ctctcatgtg ccatgatcac tatggctaga ggctcttccc ctggtcctcc taggtctcca      5280
     ctcmacatac aaaccagacc tgaagggcac cgtggcggag tttgtctatg gccaaaacct      5340
     gtctctccct ggcgagcttg tccaccctcc ctccccctcc tccctctgac ctcccatcct      5400
     tcattgattg agtccggctc tactgctcca aattctcccc ccctccccgt ccagtcactc      5460
     ccctccttct cctcatgttc caaacgcmct ggcgacatgc tcacatgttt ttctccggga      5520
     tgacwctgtc tccccccttc agccccctta ttccggccct caccaggtcc tgaagggggt      5580
     gacaacacat tcatatatcc gtcaacaatk cacccatcac tgtctcagtc caccgwgtca      5640
     aacctgctta catcgacccc gtctctcctc agcctcagtc agactcagcc agctccccat      5700
     cccccgtctc tccctccgcc cctcccctcc tgctacttct tccccccctc tgctgtcctc      5760
     cacactctct actccctctc ctttccacag cttcttactc ttccccctcc tccacccccc      5820
     tcccctgccc tcgaattcgt agttcctgtc ccccctcctc tcgccactga tctttccatc      5880
     attctacggg accgttctgt cttcattctg tgcctgactt cgactgcccc ttctccccct      5940
     tccggcatca agtggcagct tctcaaacac attccccttc ctgccatgtc attcagctgt      6000
     tcgtgccttc ctcctgcctc ccaccgaggt gctcatcatt gctccgctgg gctccgctca      6060
     acagttgtcg cgcccagccc gagccgtcca tgccacgaca cctcgmcgac ttcatcgtcg      6120
     acgtgccwgc aactcactgc cgctcaccca cattgctgcc tcctgacacc gtcgagttga      6180
     ctgtgactcg satgccgagg caagcaccga cccgacgcct tggtctcccc ccccccgccc      6240
     tctcaagatg tactccgtac tgcgggggag gggggggggg ctg                        6283
//
ID   Gypsy-42_LMi-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-203
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to the consensus.
XX
SQ   Sequence 203 BP; 49 A; 47 C; 43 G; 64 T; 0 other;
     tgtggcgacc tctcgacctc caagtcgata gtataaagtg tatgaacatc tttccaaccg        60
     gcttctttgg gagccagctt ctctgagctc tgctggccat gtttaaccag tcttgtaatg       120
     cttcttgttg tgttaagaat aaagttgtgc aagtataaat acatgtggtc ttattggggc       180
     tcaaacccct cagttaaccc aca                                               203
//
ID   Gypsy-42_MoPha-I repbase;    DNA;    INV; 7702 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-7702
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1119-1119 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           655..2940
FT                 /product="Gypsy-42_MoPha-I_1p"
FT                 /translation="MFHSPSKRKTRSKRGGLIENPRELSGVQVFDMPSDEA
FT                 LPAPAHNPMSGGSPTDPALSSDTDGAGARGIPPAQDLSADKTVVGASVNPP
FT                 TVVRPGTQNGGGKGARIAVPTSHDDVCPPSLESLFSLVGNIGKKIEEYDSR
FT                 LIRIESLAYTERRINELTRSLELSNNRSDVEVPPRFPPLSEGRDRVRGTKV
FT                 TAGNNEISNFALINDDRGASCITLSDSFAANARGLPRERIFNLSRATIPGN
FT                 GENVTTRSSDSSKLGAFPRASRIGQQNSLPRNKDPPVFVETEPCGTRYQER
FT                 YQSNIRNIQSLDAGNSITEQFNRQVGELTGGLVKLTITRLTPEGELVTEEN
FT                 LLTKKEYHQMTRNGNELPCSENLNPNYRHHREGRPTPPRRGALSWRSNESS
FT                 DSDDGMTRFAERCDSRMRCNFPSTDRYRERAADSPAVVYERGLDPIMKIGR
FT                 IVSNWKITFPKTEKDPEQFLLILKDQLSASGINKDLFVPCLSTIFEGPYRA
FT                 WYLLNKQHWQTWRDFARAFRFQWGVKKEDSVLLLEVRDLKLEKGETLAEFA
FT                 CRARLIFERMHHPPPFREQLKQILVKFNPRLTFEVLNLQIDSYDKFLHYIN
FT                 KRSYLYRKSLEAQKESRGKFAKNELTCLQEDTEDEEDSLIRGDGDDDELTD
FT                 LYAMQQPTARTSKKTVDSSNNSRTLTKQRLEQNLTRFGKNNKTSAATPIDL
FT                 SKTTQARFVPDPNKMFCYNCGGTGHTSRSCTTDRQIVCHICRAIGHVNKDC
FT                 PMYSGNGPARQ"
FT   CDS           2856..6533
FT                 /product="Gypsy-42_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ANCMPYLSSYRPREQRLPNVFGKRPCPAVIRPQIAAT
FT                 KGENEVAKSANEDQVNIEQVKTLEKAIDTAQVQNQGTVTGNSLKLEVMDGL
FT                 LSDSEMSDDEFDLAGTTVEGEPIESAIQLTTLTTDGKTNARENSGDRASEA
FT                 KILKDWRPAGLTPHLVHRLGQRRIFCVNNGLTEPERLTRIPVEISIFGEKI
FT                 RGILDSGSERSYLSRPVYERVKRFQFKELSADSTSMNGVRLGDKSIVKTEG
FT                 GTCFVIDVGDIYGPQWFSILPVSSSDVILGMDFWLSFRVKTDPVSETWTLD
FT                 GSRYSYPMTQRHVTLTELRTLTVEQTGKLKDFLNVEFSKLDNESTGMTNLI
FT                 KHVIELNDLTPHRQKPYRRSEAVREFINKEVDRLLEKGYVVWSNSDWACSP
FT                 VVAPKANGGLRFCVDYRPVNRQTIKPAYPLQHMRSILSQLHQAKFISTLDM
FT                 SEAFHQIPMDEGSRKYTAFVVEGKGLLEWVRMPYGLTGAPATFQALMDTLK
FT                 RRIKELILKRGLPNNWSEQVFAYLDDWVVVSQDFDEHLALLSLLFEVLREA
FT                 KLKVNREKSSFACKEVKFLGYIVDELGIRPNPEKIQPILDFPVPKDRTQLR
FT                 QFNGLVNWYHRHLRNIARVQGPLNKLTSPKIPWKWTEIEQNAFDETKLALT
FT                 NASRLYTPIPGQPFILYTDASDFGLGAILVQRDPESEKENLLEVLSRPLRG
FT                 AELHYTTTEKECLAVVWAVEKLRCYLEGMPFKVVTDHQALQWLYGLKNPVG
FT                 RLARWAIYLLQHSMTIEYRRGTTNEAPDALSRMHDLDVDPLGWEKIIKETA
FT                 QNRTLLTTICDENWYETKRELVSKQPDRFSEWKIENNELYYYRPDYAKLLI
FT                 DDENPWKRVVRQHEVPIILQENHETPQAGHLGRDSTYDRIRRNYYWPGMSQ
FT                 DVKAYVEDCDICIKVKYNQKPLKGPLMTRPLLKPWAQLSIDTIGPLIRSKK
FT                 GNMYIIVIQDTYTKYVELFPVRNQTGKIVVKILETVFDRWGTIPESIITDN
FT                 GTEYINKEVKALLTAKKINHITTPLAHPQANPVERVNRTIKPMIAAFIKNN
FT                 HNEWEENLSKLQLAYNTVPHSGSRISPFYLNHAREAEINPRERLTYKGSGI
FT                 SDHLVDDWVQKIGRFDELRHRVEEQIKIHRDKHLAKANSGRPKQVDLEIGT
FT                 EVYYPNKKLSNKAEGYSSKLGHKYLGPAIIKRLVGPMIVELADKNDKPIGK
FT                 YYVTDLKIPRRSLRSH"
XX
SQ   Sequence 7702 BP; 2396 A; 1617 C; 1826 G; 1863 T; 0 other;
     tttggcgccc aacgtggggc acgttggaat tttgtgtttt gtaattaaga tctatcgact        60
     ttaagtgcga aacagtggta ggttgagaag agagaaggaa aaatttatta ttttcttttt       120
     ctctcctctc ttctcttgcg gtgcacataa ttaaaatttc gtaatagtac aatacaagtg       180
     aaaccatgaa ttttgataat tgaaattcga atgaagtgga ttgtagagat cggcaatatt       240
     ctttcgaaaa gaatcagaac gttacatcgc tatttgcacg caagagaggt atactcgatt       300
     agcgagggcc taacgcaaac aggcaaggaa ttcaaaacaa ggtcaccgag tagcgctttc       360
     acgagatctc agctgtttat acatgtgtgt tcatcgtgtt ttaagttgtt tctcgtttca       420
     atcttgaact cgagactaat atcgtctacc tgatataaac tataaagaca atcatcggca       480
     caacaacaag tcgttactga atatttcatt gaatttaacg aaaaatcttt actttaagaa       540
     attaaaaggc tttagcaggg gttgatgtag attcgcccga attgaatact attattgtca       600
     aatgcatatt tagtgaaaat tactcaaggt tagtgtgacg gaaattcaac aaatatgttt       660
     cattcaccat ctaagagaaa aactcggtca aaaagggggg gattaattga aaatccaagg       720
     gaattgtccg gtgttcaggt cttcgacatg ccgtctgatg aggcgctccc tgctccggca       780
     cataatccga tgagtggggg ctcgccaacc gatccggccc tgtcatcgga cactgacggc       840
     gcgggggcaa gaggaattcc ccctgcacag gacttgagcg cggataagac agtagtcgga       900
     gcatccgtga acccccccac ggtcgttcgg ccgggaacac agaatggagg gggaaaggga       960
     gcgcgcatag cagtgccgac ttcacacgac gacgtatgtc ccccgtcatt agaatcgttg      1020
     ttttcactgg tcgggaatat aggtaaaaag atagaggaat atgattcaag attgatacgt      1080
     atcgagtccc ttgcatacac cgaacgtaga attaacgaat tgacgcggag tttggaactg      1140
     tcgaataatc gaagcgatgt tgaagtcccg ccacgttttc cccccctgtc ggaagggaga      1200
     gatagagtac gcggcacaaa agtaaccgcc ggaaacaatg aaatatcaaa tttcgcgttg      1260
     attaatgatg atagaggcgc tagttgtatc acattgagtg attcgttcgc agctaacgca      1320
     cgcgggttac ctagggaaag aatcttcaac ctctcgaggg caaccatacc gggtaacggc      1380
     gaaaacgtga ctacccgatc atccgatagt tcaaaactcg gcgcgtttcc ccgagcgtct      1440
     cgaatcgggc aacaaaatag cttaccgcga aataaagacc ctccggtttt cgtcgaaacg      1500
     gaaccctgcg gaacgcgtta ccaggaacgt tatcagtcga atatacgaaa tatccaatcg      1560
     ttagatgcgg gtaattcgat tacggaacaa tttaaccgtc aggttggaga gcttacgggc      1620
     ggcctagtca agttaacaat aacgcgttta acacctgaag gcgaattagt aacggaagaa      1680
     aatctcctaa ctaaaaagga ataccaccaa atgacaagaa acggaaacga attaccctgt      1740
     tcggaaaatc ttaaccctaa ttaccgtcac caccgcgagg gccgcccaac accaccgagg      1800
     aggggggctt tatcatggcg aagtaacgaa tcgagtgata gcgacgacgg tatgacgcgt      1860
     ttcgccgaac gttgcgactc acgaatgaga tgcaattttc cttcaacaga tagataccga      1920
     gaaagagcag ctgactcccc cgcggtggta tatgagcgag gactcgatcc tattatgaaa      1980
     atcggacgaa tagttagcaa ttggaaaatt acttttccta aaaccgaaaa agaccccgaa      2040
     caatttctgc ttattttaaa ggatcagctg agcgcgagtg gcataaataa ggatttattt      2100
     gttccatgtt tatcaactat ttttgaaggc ccttatagag cttggtattt gctgaataaa      2160
     caacactggc aaacatggag agactttgca cgggcttttc gtttccaatg gggagtaaaa      2220
     aaagaggata gtgtcctcct cttagaagta cgcgatttaa aactcgagaa aggtgaaacc      2280
     ctagctgaat ttgcttgccg agcgcgtctg attttcgaac gaatgcacca ccctccgcct      2340
     tttcgtgagc aattaaaaca aattttagta aagtttaatc cacgcttaac ctttgaggtt      2400
     ttgaatctgc aaattgatag ctacgacaag tttctacact acataaacaa gcggagttat      2460
     ctctatcgta agtcactcga agcacagaaa gaatcacggg gtaagttcgc gaaaaatgag      2520
     ttgacgtgtt tgcaggaaga tacggaagat gaggaggact ctctgataag gggggacgga      2580
     gacgacgacg aattgaccga cttatacgct atgcaacagc caactgcgcg tactagtaaa      2640
     aagacagtcg actcatcgaa taattctagg actctgacga aacagcgact cgaacagaat      2700
     ctcacacggt tcggcaaaaa caataaaact tcggcagcta ctcctataga cctatccaag      2760
     acaactcagg cgaggttcgt cccggatccg aataaaatgt tttgttataa ctgcggggga      2820
     acggggcata cttcgcgttc ttgtaccacc gataggcaaa ttgtatgcca tatttgtcga      2880
     gctataggcc acgtgaacaa agactgccca atgtattcgg gaaacggccc tgcccggcag      2940
     taattcgacc tcaaatcgct gccacgaagg gcgaaaacga ggtggctaaa tcagctaacg      3000
     aggaccaagt caatattgaa caagtaaaaa ccttagagaa agcgatcgac acagctcagg      3060
     tacagaatca gggaactgtt acaggtaact cgttaaagtt ggaagtaatg gacggattgt      3120
     tgagcgattc ggaaatgtcg gacgatgaat ttgacttagc gggaacaacc gtagagggcg      3180
     agcccattga aagcgcgata cagttgacaa cattgacgac agacggaaaa actaacgccc      3240
     gcgaaaattc cggagaccgg gcatctgaag ctaaaatttt gaaagattgg agacccgctg      3300
     gcttaacgcc acatcttgta catcgtttag gacagcgacg gatcttttgt gtaaataatg      3360
     gcctcacgga accagaaaga cttacgagaa taccggtaga aatctcaatt tttggcgaga      3420
     aaattcgcgg gattctggat agcggaagcg aacggtcata tctaagtcgt ccggtatacg      3480
     aacgcgtcaa acgttttcaa tttaaggagc tttccgcgga ttcgacgtcc atgaatggag      3540
     tacgtctcgg tgacaaatcc attgttaaaa cggaaggggg tacgtgtttc gtgatcgacg      3600
     tgggcgacat ttacggaccg cagtggttta gcatacttcc ggtttcatcg agcgacgtca      3660
     tattgggtat ggacttttgg ctgtcgttca gagttaaaac agacccagta tcagaaacgt      3720
     ggacgttgga cggtagtaga tattcatatc ccatgacaca acgacatgtc actctgacgg      3780
     aattaagaac cttaacggta gagcaaaccg gtaaattaaa ggatttccta aatgttgaat      3840
     tttcgaagtt ggataatgaa tccaccggaa tgactaactt gattaaacat gttatcgagc      3900
     taaatgatct taccccgcat agacagaaac cttaccgtcg tagcgaggct gttcgcgaat      3960
     ttattaataa agaggtggat cggttgctcg agaaaggtta cgtcgtgtgg agcaatagcg      4020
     attgggcttg ttcaccggtg gtagccccaa aggcaaacgg aggcttgagg ttttgtgttg      4080
     attaccgacc ggtgaaccga caaactataa aaccagcgta tccactccaa cacatgaggt      4140
     ctattttatc gcaattacac caagcaaagt ttatttcgac tcttgatatg agcgaggcct      4200
     tccaccaaat cccgatggat gaggggagcc gtaaatacac tgcatttgtt gtagaaggaa      4260
     aaggattact agaatgggtt aggatgccat acggcctaac cggtgcccct gctactttcc      4320
     aagcgctgat ggacacacta aaacgacgaa ttaaggaatt gattttaaaa aggggcctcc      4380
     cgaacaattg gtccgagcaa gtgttcgcat acttagacga ctgggtagta gttagtcagg      4440
     attttgacga acaccttgca cttctgtcat tattattcga ggtcttacgt gaagcaaaat      4500
     tgaaggttaa ccgcgaaaaa agtagttttg cttgtaaaga agttaagttc ctcggctaca      4560
     tcgtggatga attaggaatc cgaccaaatc ccgagaaaat acaacccatc ctcgattttc      4620
     cggtaccaaa agatagaact caattacggc aatttaacgg tctagttaat tggtatcacc      4680
     gacatttacg gaatatcgct cgtgtacagg ggcctcttaa taaattaacc agcccaaaaa      4740
     ttccgtggaa gtggactgag attgaacaga acgccttcga cgaaacaaaa ttggcgttga      4800
     ctaatgcatc aaggttatat actccgattc caggacaacc atttattttg tataccgacg      4860
     ccagcgattt tgggttgggc gcgattctgg ttcaacggga tcctgagagt gaaaaagaga      4920
     atctgctaga agtcttaagt cgaccattaa gaggcgcgga attgcattac accaccacgg      4980
     aaaaggaatg cttggccgta gtttgggcag tcgaaaaatt acgatgttat ttagaaggta      5040
     tgcctttcaa agtcgtgacc gaccaccaag cactacaatg gttgtacgga ttgaagaatc      5100
     ctgtaggccg tctcgcaaga tgggcgattt acttgttgca gcactcaatg acaattgaat      5160
     acagacgagg tacgaccaac gaagccccgg atgcactttc gcgtatgcac gacctcgacg      5220
     ttgacccact cggatgggag aaaattatta aggaaactgc ccagaatcga actctactaa      5280
     cgacaatttg cgacgaaaat tggtacgaaa caaaacgcga acttgtaagt aaacaaccgg      5340
     acagattttc agaatggaaa attgaaaaca acgagttgta ctattaccga ccagattatg      5400
     caaagctact aatcgacgac gagaacccgt ggaaaagagt agttagacaa cacgaagtcc      5460
     caattatcct acaggaaaat cacgagactc cgcaagcagg gcatttaggt agagacagca      5520
     cttacgacag aattcgccgg aactattatt ggccaggcat gtcacaagat gtaaaagctt      5580
     acgtagagga ttgtgacatt tgcattaaag ttaaatacaa tcaaaaacct ttaaaagggc      5640
     cactaatgac gagacctcta ttaaaacctt gggcacaact gtcgatcgat acaataggac      5700
     cccttattcg ctccaaaaag ggcaatatgt atataatcgt aatacaggat acctacacga      5760
     agtatgtcga gttattccct gtaagaaatc aaaccgggaa aattgtagtt aagatcttag      5820
     aaacggtatt cgataggtgg ggtacaattc cggagtcaat tattacagac aatggtacag      5880
     agtatataaa caaagaggta aaagcacttt tgacagcaaa aaagattaat catataacca      5940
     cccccctagc acacccgcaa gcaaaccccg tcgaacgcgt gaataggacg ataaaaccta      6000
     tgattgctgc gttcataaaa aacaatcata atgagtggga agaaaacttg tcgaaactcc      6060
     aactcgcgta caatacggta ccacattcgg gtagtagaat ttctcccttt tatttaaatc      6120
     acgcaagaga agccgaaatt aacccaaggg agcgcctcac ctataagggc tcgggaattt      6180
     cagatcattt agtagatgat tgggtgcaga aaataggcag atttgatgaa ttacgtcacc      6240
     gggtcgaaga gcaaattaaa atacatcggg ataagcacct tgctaaagct aattcaggta      6300
     gaccgaaaca agttgactta gaaatcggta cagaagtcta ttatcctaat aaaaaattaa      6360
     gtaataaagc cgaaggttat tcttcgaaac taggtcataa gtacttaggc ccggcaataa      6420
     taaaacgact ggttgggcct atgatcgtcg aattagcaga taaaaatgat aagcctatcg      6480
     gaaaatatta tgtaaccgat ctaaaaatac ctcgtcgaag cctacgcagt cattaaaaaa      6540
     aaaaaagaga gaaattgtac ttataggtat tttgtatata tttggtagtg tacacatcat      6600
     tgtattaata attccgtata tatcctgtaa cacaaaaaaa aaaaaaatct ctacttctaa      6660
     caccgatcgc cggagttgag attcctgtga cgaaaggccg tcaaccgtgg agaaacctca      6720
     gcactttatg acatatctgg ggcagcaagt ttgaagacat cgcaagttcg aaggagaatt      6780
     aaggccttcg tcgattcgaa ataactacca gaacctcgac aatgcggaac atactaaacg      6840
     aaatggattc cgagctgcgt cttcgcgggc tgccgtgcca ggtcagggtc gcgagcgggg      6900
     aatagtccgg cgatcgcgac cgcactccga tgacggaccg tggcgatgag acggctgtca      6960
     ctcctcagca atgttccgaa cgaactgaat gcctcgcagc tcaccgcctc cgggaccgaa      7020
     gcgtggttgt ggcaaggtgc gggatggcca gccttgcttg ggaacgctat caagcgtgcc      7080
     gaaatctcag tccgtcgggc gaggtccgtc gagatcgacc aaggcgccgc ggcacgcaaa      7140
     actcctcact tgtggcggaa acccactgtg gaaatagata aatctgttct aaggaccccg      7200
     ggcaccggtg gcgtcgaacg caggcttgcg aacaatgtcc gagttgtctg ctgagtaaaa      7260
     ctaaaactac catatgagca tttcaaggat gccggaagtc ccacttgcag gggaaaggtt      7320
     ggagcgatgt gacaaaggaa tgatccacgg ggacaccaca gcgaacatgg gcggcgtcgg      7380
     tccaccgtgc tcaattttgg cgttattcga tctattgagt tgtattgtta gatttggtat      7440
     tgcggaatta acaattaggc aagagctaat gaattatttc gagcgttgag tcgcgtgagc      7500
     tgtttttttt tcgtttgtta attgtgacct ttgtccgtcc tatgatttgc aagactattg      7560
     aatggctaac taaacttatt tctattgaat gaggtggcca tatttgggac ggagatcatg      7620
     aatctctcac gcgttttgag cgcatggttc tcttttcacg cggcatctct cacttatgac      7680
     gtcagggttc gagggggaag ga                                               7702
//
ID   Gypsy-42_MoPha-LTR repbase;    DNA;    INV; 676 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-676
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1206-1206 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 676 BP; 178 A; 142 C; 178 G; 177 T; 1 other;
     tgtgacaaaa gaaaagaaag aaagggagga aatagaaagt ttccctgacg tcatcgctcg        60
     attttgctcc tcggggttcg ccgaggactc tatgctcgat cgttttgtcc tggtgttggt       120
     gaccctaaat gtagaatggt agtaatagtc taaatgttgc gcgacgcgcc gaaaatcgac       180
     aggtcgtatc gacatgtatc gactccatag atcgtggagc cccgaaagaa gccgagccgt       240
     gttgtaagca caggggaagg agacacttcc cttccgtctg twgaagcggc gagtcgccgg       300
     tgcgcgggga gctgtcttga gttgcgaacg aataaattat aattaaatat agtggagtgg       360
     tgccggtgga gacgaaccgt tgtgagattg tgatccgggg ccatgtaaat tgtgagttaa       420
     ataaattcat gtctccgtct actctcagta gtcttgcaat cggttattac ttgggtcctc       480
     caatggaacc cgccttgtga gtctcgtcct ttcccatcac gtgtgtggtt atcagttccg       540
     ttaactgatt ggcgcccaaa ttttattcgg aataaataga ctttaaattt aataaaatta       600
     taatcagtaa gaactagagc cctgccagcc gaaggacccc ggccgcggca ggtgaaggtt       660
     aaataatacc gtctca                                                       676
//
ID   Gypsy-42_MSe-I repbase;    DNA;    INV; 4266 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4266
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 919-919 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           399..1775
FT                 /product="Gypsy-42_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase
FT                 (partial)."
FT                 /translation="MSKSCEFGGGLDESMRDQLVCGINSEIIRQRLFAEEK
FT                 LDYAKAYKLAVSIEAAEKNAAIVEGQARPSAPVETKCLAIKNMRRNTVRPW
FT                 GPAKDHVASTHRNKLNVGTTTEVSSEPAERGRPYQQCGVCGRSHHTASCKF
FT                 AKYFCRVCNKQGHLKRVCPQLTSQNYVAQTEDIGSAIDSDASDEVIQNDIN
FT                 QLSIEQCKPIYIQVNIQGKIVKMQCDTGSAVSCINYKLYCKLFSNLDIKNC
FT                 QLGLRYYTGEIVQPLGLITPMVKYEDKCKVLDLYIIKDGNTVLLGRQWLAE
FT                 LNIKLPIIKYDHINMLGKYETFNVKHFSSRYCKVFEDGLGCFTGGPVSIHV
FT                 REGARPVYMRARPLAYAMRAPVERALDQLVQDGILTPVDRSDWATPIVPVV
FT                 KKDGNIRICADYKLTLNKVLEIDRYPVPRVEDLLTRLHGGERFSKIDLSQA
FT                 YAQLELDESKNTQS"
FT   CDS           1757..4177
FT                 /product="Gypsy-42_MSe-I_2p"
FT                 /note="reverse transcriptase (partial),
FT                 ribonuclease H, and integrase."
FT                 /translation="IKKYTVINTHKGLFMYNRLVYGLASSPGIFQRRLEQM
FT                 FADMPNVGVFLDDIIITGLDTHCHIDTLHKVFQRLQHYGLKVKREKCSFFK
FT                 ESISFLGYVISKEGVHTSPEKVKAIIDTPQPTNSTELRAFIGMTMYYAKFV
FT                 KNISTILAPLYDLLRAHVKFIWCSKCEIAFTKVKKLLASSEVLIHYTPDLP
FT                 IILTTDASSVGVGAVLSHVTPQGERPIGYASRSLTSAERSYAQIDREALAI
FT                 VFGIRKYHQYLYGRRFILKTDHKPLTYIFGNKVGIPVMAASRVQRWAVLLS
FT                 GYTYDIEFVPSKSNGADGLSRLPSSSNIHKDNEVTYINFVEDFLPVTNREV
FT                 KAEISKDRLLSRVLLYVQSGWPEHCNEDDLKPYFMKRNELYIENGCLMWGY
FT                 RIIIPNTLQNVVLKQLHSSHMGIVKTKSLARSYIWWPNIDKDVEEVCRQCD
FT                 TCAAESAAPPRVPPQPWHYALQPWTRLHIDFLGPIKGKTYLVLIDSSSKWL
FT                 EIFEMPLTNAAQVIRVLRATFARFGLPVELASDQGPPFTSSEFSNFLKQNG
FT                 IRQIFSPTYHPSSNGAAENAVKSCKMVIKKAYRDNVDVDAALQNFLLVYRN
FT                 TSHSTTGETPAMLLQRRTLRNRLDLLRGDCSLKDRVNKAKQCQIEYAGGIQ
FT                 RELHVGETVWARNYSKGDKWEKGTVACKVGSRQYIIETGNGRQTTRHIDQI
FT                 KRRSRFSDVTGPELTDTVEENPYKNKFLKENDVEDVEPTPEKNIYDKPILL
FT                 EEDKIGKEIKEQAGEVASGTSQIISTNPERNSPQPLSTSRIKRICKPAKRF
FT                 GFDEY"
XX
SQ   Sequence 4266 BP; 1428 A; 757 C; 970 G; 1111 T; 0 other;
     gtgacgacga ggattaaata ttgtcgcgct aaagatcgtc gaattgaaag tgtaaagaat        60
     tgcaaaatgg caataggaaa gataggtgaa tttaaagtta gtaccgacga ctggggattg       120
     tacgtcgagc gagttgaaca gtattttttg gcgaataaca ttaaaaatga acttcaggtt       180
     tccaccctga ttaccgttat gggcgcggaa tgttacgaat tgctagtaaa tttgtgcacg       240
     ccggagaaac caagcaaaaa aacgtttgaa gagatatcgt ccatcttgaa aaacacttgc       300
     aacccaaacc gagcattctt gccgaaagat ttaaatttcg gcaaagatta caaaaggaag       360
     gcgaaagcat cgcagaatac gtcgcaattt taaaaaaaat gtctaaatct tgtgaattcg       420
     gaggcgggtt agacgaaagc atgcgcgatc aactagtatg cggcatcaat agtgaaataa       480
     tcagacagcg gctttttgcg gaggaaaagt tggattatgc gaaggcctat aaattagctg       540
     tcagtataga ggccgcggag aaaaatgctg caattgtaga gggtcaggca cgaccatcag       600
     cgcctgtcga aactaaatgc ctagctatta agaacatgcg gcgaaacacg gtacgtccat       660
     ggggcccagc aaaggatcat gtagcatcga cgcatcgtaa caagttgaat gtcggcacaa       720
     caacagaagt atcgtcggag ccagcagagc gcggccgtcc ttatcagcag tgcggggtgt       780
     gtgggagatc acaccacaca gctagctgca agtttgctaa gtatttttgc agggtgtgta       840
     ataaacaagg gcatctgaaa cgtgtatgtc cccaattgac gagtcagaac tatgtggcac       900
     aaacagaaga cattggaagt gcaatagaca gtgatgcaag cgatgaggta atccaaaatg       960
     atattaatca gttatcaatt gaacaatgta aaccaatcta tatacaagtc aatatacagg      1020
     gtaagattgt taaaatgcaa tgtgacacgg gcagcgcagt atcctgtatc aattataaat      1080
     tatattgcaa attatttagt aatttggata taaaaaactg tcaattgggt ctgaggtact      1140
     atacagggga gatagtgcag ccactaggct taataacccc tatggtcaaa tatgaagata      1200
     aatgtaaagt attagattta tatattatta aagatggtaa cactgtctta ctaggcaggc      1260
     aatggctagc agaacttaat attaaattgc caataatcaa atatgaccat atcaatatgt      1320
     taggtaaata tgaaactttt aatgtaaaac atttcagttc cagatattgt aaagtcttcg      1380
     aggacgggtt gggctgtttc accggtgggc cagtaagcat ccacgtgcgt gagggggcgc      1440
     gccctgtgta catgcgggcg cgaccactgg cgtacgcaat gagagcaccg gtggagcgtg      1500
     ccctagacca gctggtgcag gacggtatcc tcacgcccgt cgaccgttct gactgggcaa      1560
     caccaatagt acctgtggta aaaaaagatg gtaacatcag aatctgtgct gattataagc      1620
     ttactttaaa caaggtgttg gaaattgacc gttaccctgt accgcgagta gaggacttgc      1680
     tgacacgttt acatgggggt gaaagattca gcaaaataga cctttcacaa gcctatgccc      1740
     aattagaatt agatgaatca aaaaatacac agtcataaat actcataagg gtttatttat      1800
     gtataatcgg ttagtatatg gtttagcttc gagcccaggt atttttcaaa gacgattaga      1860
     acaaatgttt gcagatatgc caaatgttgg ggttttcctt gatgacataa taattacagg      1920
     cctagatact cattgtcata tagatacatt gcataaagta tttcaaaggt tacaacatta      1980
     tgggttaaaa gttaagagag agaaatgtag tttttttaaa gagtcaatca gtttcttagg      2040
     ttatgttata agcaaagagg gggtgcatac aagtcctgaa aaagttaaag caatcattga      2100
     tacaccacaa cccactaata gtacagagtt aagagcattt attggtatga caatgtatta      2160
     tgcaaaattt gtaaaaaata ttagcacaat tctcgcacca ttatacgatt tattacgtgc      2220
     tcatgttaaa ttcatctggt gtagcaaatg cgagattgct tttacaaagg ttaaaaagtt      2280
     attggcatca agtgaagtac taatacatta tacaccagac ttaccaataa tactaaccac      2340
     agatgcaagc agtgtgggtg ttggagcagt gttgtcacat gtcacaccgc aaggcgaacg      2400
     accaataggg tatgcatccc gatcactcac ctctgcagag cgctcatacg cacaaataga      2460
     tagggaagca cttgctatag tatttggtat tagaaaatat catcagtatt tgtatggccg      2520
     gcgatttata ctgaaaacag accataagcc actaacatat atatttggca ataaagtagg      2580
     tataccagtt atggccgcgt ccagagtcca acgttgggct gtcttgctat caggttatac      2640
     ttacgacatc gaatttgttc cttctaaatc gaatggtgca gacggattgt ccaggctgcc      2700
     gtccagtagc aatattcaca aagacaacga agtcacttat ataaattttg tagaagactt      2760
     tttgccagta actaatagag aagtaaaggc agaaatatct aaggataggt tgctaagtcg      2820
     cgtgttgtta tatgtgcagt caggttggcc agaacactgt aatgaagatg atttaaaacc      2880
     atattttatg aagcgtaatg aattgtacat tgaaaacgga tgtctaatgt ggggctatag      2940
     gataataatt cctaacacat tacaaaacgt tgtactaaaa caattgcaca gtagtcatat      3000
     gggaatcgtt aaaaccaaat cactagctcg tagttacatt tggtggccta acatagataa      3060
     agacgtggaa gaagtgtgtc gacaatgcga tacgtgcgca gcagagagcg ccgctccacc      3120
     tagggtacca ccacagccat ggcattacgc gttacaaccg tggacgcgac ttcacatcga      3180
     ctttttaggg ccgattaagg gaaaaactta tttagtgtta attgattcca gctctaagtg      3240
     gcttgaaatt ttcgaaatgc ccttaacgaa tgctgcacag gttatacgtg tactgcgtgc      3300
     tacttttgca cgatttggtc ttccggtaga gttagcatct gatcaaggac ctccttttac      3360
     aagttccgag tttagtaatt ttttaaaaca gaacggtatt cgccaaatat tttcaccaac      3420
     ttaccacccg tcatcaaacg gcgcggccga aaatgccgtc aaatcatgca aaatggtaat      3480
     caaaaaggca tacagagata atgttgacgt agacgcggcc ttacaaaatt ttctactggt      3540
     ttacagaaat acatcgcata gtaccactgg agaaacaccg gctatgttgc ttcagcgacg      3600
     tactcttcgt aaccggctag atttgttacg tggagactgt tcactgaaag acagggttaa      3660
     caaggcaaag caatgtcaaa tagaatatgc ggggggtatt caacgggaac tacatgtggg      3720
     ggaaactgta tgggctagaa actatagcaa gggagacaag tgggaaaagg gtacagtagc      3780
     atgtaaagta ggttctagac agtatattat agaaacggga aacggtcggc aaacaacaag      3840
     acatatagat caaattaaac ggagatcacg tttttctgat gttactggtc cagagcttac      3900
     agacacggtc gaggagaatc cttataagaa taaattccta aaggaaaatg acgtagagga      3960
     tgtcgagcca acaccagaga aaaatattta tgataaaccg atattattag aggaagataa      4020
     gatcggcaag gagattaagg aacaggcggg agaagtggcc tcgggaacat cgcaaataat      4080
     ttccactaat ccggagagga attcgccaca gcccttgtcc acttctcgaa ttaaaagaat      4140
     ttgtaagccg gcaaaaaggt tcggttttga tgaatattaa ttaagtataa gatgaaacat      4200
     ttgtatttga tattagatca aaaatgttag ttatatatag agtaagtcta gatttaagaa      4260
     gtgagg                                                                 4266
//
ID   Gypsy-42_MSe-LTR repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-152
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 968-968 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 152 BP; 41 A; 33 C; 27 G; 51 T; 0 other;
     tgtaatgtat gtaaatgatg tcatctgtgg aacatcacta cgtcctgtgt cgtctgtgac        60
     taattgtgtc tcatcactac gcctgtctgt caataaatgt tttatggccg ctaccgacgc       120
     ctattatttt acacaaatgc agaaatatca ca                                     152
//
ID   Gypsy-42_SiCu-I repbase;    DNA;    INV; 6020 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-6020
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5063-5063 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..1586
FT                 /product="Gypsy-42_SiCu-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MSDQRSSRRIAKKSPEVSPLQQHHKPRKRKEKKGSSP
FT                 DDADQAXSSSTSSSDTAPEALEETIRVPERHSSSSSSSASSTEPXTSPDDQ
FT                 XSADKSSSSSESDLNSPHHTSSELFQSAEDDTVLSVDTSNLQTSDSSSDWD
FT                 LSFLFQDPPDEKPATXVKTPEXAITTXVKMTDYALMPKYNKPLTSRDVSLF
FT                 LKQYKLWGNQQKLGDNAMKATLALAFENEDAKRWCLINADSAADATIKFDA
FT                 FVQLFLEQAPLQSGASDLIRIFSELPAPDELVSSYLLRVRYQLGDDWTAAD
FT                 EDNFTXQLLANLPKHVAAYINCKGAKPDTFLKLLKLVREYEKQGNDRVSSH
FT                 PTIKQEVNVHAATANDEFQDMKTLMQVLIREVADIKSTSATPANRNPGNSR
FT                 GNNNYRRGNGNYNNSXGRSRGNGRCYNCNKPGHIARDCYSNPQRGRGRGRG
FT                 RGGGGGRXFQNSGYYQYVPFPTADPAQQWQRFPALQQQQQQGQPGPIISFP
FT                 PSNMGN"
FT   CDS           1349..5506
FT                 /product="Gypsy-42_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QTRSHCSRLLLQSSTWTRTWSWPWWWWWTYXPEFRIL
FT                 SVRPVPDSRSSSAMAAFSSASTTTAAGTTRSYHQFSSVQYGKLSTAQPVIK
FT                 DAMKPVPKXEKSENVNKEDKMTASINTNFPDLSFLXLKEPNQGPRVXIDIN
FT                 GDKKVALVDCGAVTSLIDKXLASNFPKFKNEKLVLRSISNNVLNDDGIALV
FT                 TFXLADQXFTFPMMIVSLTRSEAVLGNDFLETFNVVVDRDSNQLYSKQHNW
FT                 SIDMTPKEDLWTRLGMSAHISTCKNKKXNSSAIQQQSLXTPAXTTNAXSKP
FT                 QXLPISYLRLSEKVXLPPRSQIQVPICSVGLXENCIAVVSPSNHLLKTNGI
FT                 LTPHMIVNNATKSIIITNSSNESRILCTQTKLGKLTNIITEKDVLPLEAVP
FT                 VXSTAVTXNKSTTKDPFQVIQKQVKIGPDVSPNAKQQLLXLLHNFQDCFAS
FT                 DPNKLNQIKDYKFHIETGTARPTRTKPFNLSDSEHDCIDENVKQLLVKKLI
FT                 EPSNSPWCSSPFLVPNRDENGNIKYRMVIDYRKLNEVTRPLAFPLPRIDQI
FT                 IQKLRGAKFISTLDMASGYHQVSLDEESKEKTAFQTRDNFFQWNVMPFGPT
FT                 CAPAVFSQLIQLVMAGIVDEHLSTYLDDICIFTPDEATHLKKLTQVFEKLR
FT                 NVGLQLKPSKCKFMFSEIRVLGYKATKTGILPTDEHISGLSKMXSPTTRKE
FT                 LQKLLGFFGFFRRFIKNYASIIRPLQQLLSKSKKFLWESQHEEIYKKLKTL
FT                 LTTAPVLAHIRRDNELILRTDGSLEGIGASLSQVQDGVERPICFISRCLNN
FT                 AEKNYTTTMIETLAVVWSLQKLRHLVFQRKIKCYTDHSALCYLVKGPKHNL
FT                 PSKLTRMLLSLSEYNVDFYHVRGAANHVGDTLSRFPVEVAPPDNPNVVDLP
FT                 ILSLDASSIXXMQQQDPELLIIRQQCEKGSTKGKLKHTFIKNNILMFQSPS
FT                 HHHPVIYLPEKLRKPVLTEMHDDPISAHLGFFKTYQKISSRFYWPKLRAXV
FT                 KEYVQTCEPCQKRKLLKQKPAGLLQPMPVPETPFSTIGCDLVGPINRSKSG
FT                 KRFIITVTDLTTRYLECAAIXNGTSEEISKFLVNRIFLRHGVPHNIITDLG
FT                 CAFTGEFMQELNKFMGITHNRTTSFHPQSNGACERQHSTIMDAISYYVSKG
FT                 KDDWDAFLPHIQFAINSAVHEGHLFSPHYLLYGQEPTLPAEVELGLPRFVN
FT                 VADLAEKVKTARELAVSRLQARQQIHARYANXKRXDVSFKIGDKVLVRKFV
FT                 NVKGKSKKLFMNWVGPXSIVEKSPYNDVNYIVEAKHRNKMIRQTVHVEKLK
FT                 MXHERNNDDSNSVSISAPSQCNEVARKNVNVPKNEXSVQKENVXPFPPRSE
FT                 ANSSXNHSARYNLRQRPXIHYSR"
XX
SQ   Sequence 6020 BP; 1992 A; 1365 C; 1107 G; 1438 T; 118 other;
     attggtggag atgcgatttt taagctctac aagccagaaa atagacaaaa aagtgaagtt        60
     ataaaaaagt gaacaagtta atgtccgacc aaaggtcaag tcgcagaata gccaagaaat       120
     cacccgaagt ttcgccactg caacaacacc ataaaccaag aaaaaggaaa gaaaagaaag       180
     gttcttcacc agacgacgcc gatcaagctw caagctcctc aacmagtagt tcagacacag       240
     ctccagaagc cctagaagaa actattcgcg ttccagaacg tcacagttca tcgtcatctt       300
     caagtgcaag ttctacagaa cctktaacga gcccagacga ccaamaatca gcagacaaat       360
     cgagttccag ttctgaaagc gatctcaact cgccccatca cacctctagt gaactatttc       420
     aaagcgccga agacgacacc gtcctcagtg tggacacctc aaacctgcag acaagtgact       480
     catcatcaga ttgggatttg tccttcctat ttcaagatcc tccagacgaa aaacctgcaa       540
     cacmagtwaa aaccccagaa scagcaatwa caacamcagt maaaatgacg gactacgctc       600
     tgatgcccaa gtataacaag ccgcttacca gccgtgatgt gagcctcttc ctgaaacagt       660
     acaaattatg gggcaatcag caaaaattgg gcgataatgc catgaaagcg acactggcgt       720
     tagccttcga gaatgaagac gcgaaaagat ggtgcctcat taacgccgac tccgcagcag       780
     acgcgacaat taaattcgac gcttttgtcc agttattcct ggagcaagct cctcttcaaa       840
     gtggtgcctc cgacctcatc cgaatcttca gtgaattacc agcaccagat gagctcgtgt       900
     cttcgtacct actwcgcgtt cgttaccaac tcggtgacga ctggacagca gcagatgaag       960
     acaactttac mwcacaactk ttagcaaatc ttccwaaaca cgttgcagca tacataaact      1020
     gcaagggagc caagccagac acatttctaa agttgctaaa acttgttcga gagtacgaga      1080
     aacaaggaaa tgaccgtgtc tcaagtcacc ccaccatcaa acaagaagta aatgttcacg      1140
     cmgctacagc aaacgacgag ttccaggaca tgaagacgtt gatgcaagtc ctcattcgwg      1200
     aagtggctga catmaagagc acctctgcca caccagcaaa cagaaatccc ggmaattctc      1260
     gcggaaataa taattaccgc cgtggaaacg gcaactacaa caacagtcma ggacgatccc      1320
     gtggaaatgg tcgttgttac aactgtaaca aaccaggtca cattgctcga gattgttact      1380
     ccaatcctca acgtggacgc ggacgtggtc gtggccgtgg tggtggtggt ggacgtatst      1440
     tccagaattc aggatactat cagtacgtcc cgttcccgac agcagatcca gctcagcaat      1500
     ggcagcgttt tccagcgctt caacaacaac agcagcaggg acaaccaggt cctatcatca      1560
     gttttcctcc gtccaatatg ggaaactgag tacggcacag ccagtaatca aggatgccat      1620
     gaaacctgtg ccaaaawtag aaaaaagcga aaatgttaac aaagaagata aaatgacagc      1680
     atccatmaac acaaattttc cagacttatc attcctacaw ttaaaagaac caaaccaagg      1740
     accccgagtt twtatwgaca taaacggtga taaaaaagta gctctcgtcg actgtggtgc      1800
     tgtgacgtcc ctcattgata aaamgttagc ctccaacttt cctaaattta aaaatgaaaa      1860
     attagtgctc cgctcaattt ccaataatgt tttaaatgac gacgggatag cactmgtaac      1920
     atttaawttg gcagatcaaw cttttacttt tccaatgatg atcgtgagtc ttaccagaag      1980
     tgaagctgtt cttggtaacg actttctcga gactttcaac gttgtcgttg accgtgactc      2040
     caatcaactt tactccaaac agcacaattg gtcaattgat atgactccwa aagaagactt      2100
     atggacccgt ctcggtatgt cagcccacat ttcaacctgc aaaaacaaaa aasaaaattc      2160
     atcagcaatt cagcaacagt cactcsaaac accagcaama acaacaaatg caaawagtaa      2220
     gccacagcma ttaccaattt cttacctgcg cttatcagaa aaagttgwgc tccctccaag      2280
     aagccagatc caagtcccca tttgctcmgt gggactgsaa gaaaattgta ttgcwgttgt      2340
     ktcaccgtcs aatcacctgt taaaaacaaa cggaatatta acacctcaca tgattgtcaa      2400
     caatgcaaca aaaagcatca tcatcaccaa cagcagcaac gagagccgaa ttttgtgtac      2460
     acaaacaaaa ctnggaaagc tcaccaacat catcacagaa aaagacgtcc ttcctcttga      2520
     agccgttcca gtcmactcaa cagctgttac csacaacaag tcaacaacaa aagatccatt      2580
     ccaagttatc cagaaacaag taaaaattgg tccagacgtg tcaccaaacg ccaaacaaca      2640
     gctcctkcam ctccttcata attttcaaga ttgtttcgca agtgacccca ataaactgaa      2700
     ccagatcaaa gactacaagt tccatataga aaccggtact gcgaggccaa camgaacaaa      2760
     accatttaat ttaagcgaca gtgaacatga ctgcattgac gaaaacgtta aacaactttt      2820
     agtgaaaaaa ttaatagaac cgagtaactc accttggtgc tccagcccgt tccttgtkcc      2880
     aaacagagac gaaaatggaa acatcaagta caggatggta atagattacc gcaaattgaa      2940
     tgaagtgaca agaccgttag cctttccwct cccacgtatc gaccaaatca tccaaaagct      3000
     ccgtggtgcc aaatttatct caactcttga catggcaagc ggttaccatc aagtttctct      3060
     cgacgaagaa agcaaagaga aaacagcatt ccagactcgc gacaactttt ttcaatggaa      3120
     cgtcatgccw tttggtccma cttgtgctcc agcagtcttc agccaattga tccagttagt      3180
     aatggcagga atcgtagacg agcacttatc aacmtatctt gatgatatct gtatwtttac      3240
     acctgacgaa gccacccacc tgaaaaaatt aacacaagtc ttcgaaaaat tacgtaatgt      3300
     tggwctacag ttaaagccgt caaaatgcaa attcatgttc agtgaaatcc gagtwttagg      3360
     ctacaaagcc acaaaaactg gtatcttacc tactgacgag cacatttccg gcttgtccaa      3420
     aatgmgmtca ccmacaacam gaaaagaact acaaaaatta ttaggcttct tcggwttctt      3480
     ccgccgtttc attaaaaatt acgcttcmat catcagaccw ctacaacagc tgctctccaa      3540
     aagtaagaaa tttttatggg aatcacagca tgaagaaatt tataaaaaat tgaagacact      3600
     attgacaaca gcaccagttt tggctcacat tcgtcgtgac aacgaactta tcctcagaac      3660
     agatggtagt ttggaaggaa ttggtgccag tttaagccaa gttcaagatg gtgtagaaag      3720
     accgatttgt tttatcagcc gttgtctcaa taacgctgag aaaaactaca caacaacaat      3780
     gattgagact ttagcagtwg tttggagcct acaaaaatta cgccatttag tgttccaamg      3840
     aaaaataaaa tgttacaccg accactctgc cttgtgttat ctagtgaaag gacctaaaca      3900
     caatctacca agtaaactga caagaatgtt gctttccttg tcagagtata atgttgactt      3960
     ttaccacgtt cgaggtgccg ccaatcatgt aggcgacaca ctttcacgct ttccmgttga      4020
     agttgctcct ccagataatc ccaacgttgt cgaccttcca atactttcac tcgacgccag      4080
     ctccattkck gmwatgcaac aacaagatcc agagctcctg ataatacgac aacaatgtga      4140
     aaaaggcagc acaaaaggaa aattgaagca cacsttcatc aaaaacaaca ttctcatgtt      4200
     ccagtcaccg tcacatcatc atcctgttat wtacctacct gaaaaattaa gaaagcctgt      4260
     tctcaccgaa atgcacgacg accctatttc tgctcatctt ggtttcttca aaacctacca      4320
     aaaaatttca tcacgatttt attggcctaa actacgtgct cawgtgaaag aatatgtaca      4380
     aacttgcgaa ccgtgccaga agagaaagct attaaagcag aagccagcag gattactaca      4440
     acctatgcca gtgcctgaaa cwccgttttc tacgatagga tgcgatttag tcggcccaat      4500
     aaataggtcg aaaagtggaa aamgattcat aataacagtk acwgacttga cwacgcgtta      4560
     cctagaatgt gcagcgatam mwaatggaac mtcmgaagaa atmagcaagt ttttagtaaa      4620
     tcgtatmttt ttgcgkcatg gtgttcccca caacataata accgatttgg gatgtgcgtt      4680
     tactggcgag tttatgcaag aactcaacaa gtttatgggt atcacccaca acaggacgac      4740
     aagctttcac cckcaaagca atggcgcatg cgaacgacag cattcaacaa taatggacgc      4800
     catctcatac tacgtctcaa aaggaaaaga tgattgggac gcctttctcc cacacatcca      4860
     attcgccatc aactcggcag ttcatgaagg tcatctcttt tcgccccact atctacttta      4920
     cgggcaagag ccgacgcttc cagccgaagt tgagctcggt ttgccccgct tcgtcaacgt      4980
     ggccgattta gctgaaaaag tgaagacagc aagagaatta gcagtatcma gacttcaagc      5040
     aagacagcaa attcacgcaa ggtacgctaa tmaaaaamga maagatgtat catttaaaat      5100
     aggmgataaa gtgttagtam gaaaatttgt caatgtaaaa ggaaaaagta aaaagttatt      5160
     catgaattgg gtaggacckt wcagtatwgt agaaaagagt ccwtataatg atgttaacta      5220
     cattgtwgaa gctaagcata gaaataagat gatwaggcaa actgttcatg tagaaaaatt      5280
     aaaaatgtwt catgagagaa ataatgatga tagtaatagt gtaagtatta gtgcgcctag      5340
     ccaatgtaat gaagtagcaa gaaaaaatgt aaatgtgcct aaaaacgaag wwagtgttca      5400
     gaaagaaaat gtcmatcctt ttccgcccag aagtgaagcc aactcatcaa scaaccattc      5460
     agctcgttat aatttaaggc aamgaccckc gatccactac tcaaggtgaw wtgggcccaw      5520
     maaamttcat ttgcgtagtg gaccgactga ctgttattaa tttgacattg agcatcatga      5580
     tgtgtttagt gaactcgtgc gccggccggc aatcaaaats tcatcagcac gtgtgtaaaa      5640
     gcttcaaaaa ggatccttcg tttcgttgtt ataccatggt tgtatatama agtttcttta      5700
     gctttaagtt atcaaaaata tccaatttat ktcatttaca tattttcact ttgttaagcw      5760
     tttttctttt cgttgtaatc tgcttgggct acggcaaggt atgagtggta atggattgag      5820
     agacgaaagt caaacggcta gtgattagct ttcagtctca gagccawtta ctactccagc      5880
     tagtctctac agatgccttc gccaaccaac agaaaataaa aatctttaaa agttattatt      5940
     gttaagawta ttttgttcaa tktaagattt ttgttaagtt tacgactgtg cggacacagt      6000
     cttatttgtt aatgggcgta                                                  6020
//
ID   Gypsy-42_SiCu-LTR repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-466
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5119-5119 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 466 BP; 162 A; 91 C; 80 G; 130 T; 3 other;
     tgtcacatat aaaatgtaac gtaaaacctt cgaggttctg maagcccaga atatgctaat        60
     wagcctaaat tggttataga gataagacgt tggatggaga ctgataatga ctctgtctcc       120
     agtccacgtc tcaaacattg attaaaaata gttaagctga acctcacgaa atattctatt       180
     ccatgcttct cctctaagct tgtatgaaat tacaagaata taataatatg tctttgatgt       240
     ttaaccttca gaaattggtt tggtgctgag aaggacagtt caataaaatt aactctctct       300
     ccttacttac gttctcgctt caccccaaaa tgatttagca ttgctatatc ccgtacgagc       360
     atccacaagc ataatcgcac aagattacaa gtcacgagat aggagataga gaatgaaatg       420
     ataagcacag cagcataagw aaagcagcat aattctaacc gtgaca                      466
//
ID   Gypsy-42_SiOr-I repbase;    DNA;    INV; 4064 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4064
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 376-376 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..963
FT                 /product="Gypsy-42_SiOr-I_1p"
FT                 /translation="MHNSDSNGTDSASASNSDNSAPATLQQSQTQQSIDEV
FT                 NEVRNIRLPPFWKANPNLWFAQVDAQFATFRLRSDQLKYFHVISVLDIDTL
FT                 QHVSDLIANPPENNKYESLKTTLIDRCSDSQERQIKKLLSEIELNDKKPSQ
FT                 LLREMRVLAKNFVSDTILQTLWLQRLPTNIQVVLSASAGLDLTKMSEIADK
FT                 VIEVTSNSPAFIAEVSSKPKQNLCGCEGQISQLSQQVSEMSEKLDNLLRNR
FT                 SRSRLRSSSRGTALTDNKEYCFYHNQFGNKAKKCNTPCSFNQPKN"
FT   CDS           876..4040
FT                 /product="Gypsy-42_SiOr-I_2p"
FT                 /translation="QQGVLFLPQPIWKQGKKVQHTLQLQPTKKLDAPLEIE
FT                 EAANTGVTKQYRLFIKDKATGANFLVDTGADISVLPKSFGKNNTINIDFPL
FT                 HAANGSIIETFGYKILTLNFGLRRPITWKFIIANVPRPIIGADLLAYFGLV
FT                 VDLKNRKISDSITNLHVPGRFLPCSEPAVTIVSKTSKFHLLLQKFPEITNP
FT                 SIVSTVKSGSVFHHIVTNGPPVADRPRRLPPEKFKIAKAEFAYMMSQGICR
FT                 PSDSPWASPLHLVPKKTGEWRVCGDYRRLNSKTIPDSYPIAHIEDFSYKLH
FT                 GKQFFSTLDLARAYHQIPVAEEDIQKTAVITPFGLFEFPVMTFGLRNAAQT
FT                 FQRFIDHILRDFDFCYSYIDDVLIASDNEQQHLHHLGLIFKRFQDYGLKIN
FT                 PSKCTFGMSQVQYLGYEISSQGTKPLQSKIEAIKSYKKPQTVVELRRFLGM
FT                 VNFYRRFIKNAARNQALLNEYLHDSKKNDKTPIAWTLESDEAFYSCINDIS
FT                 NAALLAHPKENAALILTCDASDLAIGSTLEQMIDGHQYPLGFFSKKLSPTE
FT                 KNYSTYDRELLAIYESIKHFRHMLEGRIFVIRTDHRPLTHAFNQKPQKASP
FT                 RQIRQLDFISQFSTNIQYIPGEQNVAADALSRLDTITMPISVSTEEIAEQQ
FT                 KEDEDLQSLLSGDVTTGLNLQAFSLDSNQTIICDTSTNTIRPFVPKTLRRR
FT                 VFDMVHKLSHPSARSSKQQIRGKFVWTSMHRDIVYWCKTCIPCQKSKIHRH
FT                 NKLTPLNFPLTDQRFQHVHIDIVGPLPPSQGYQYCLTMIDRFSRWPEAVPI
FT                 KDQTADTIAKTFYSVWVSRYGSPKIVTIDQGRQFESTLFKALTNLLGTKRI
FT                 RTTAYHPQANGLVERWHRSFKAAIKCHQTADWVNILPTILLGLRTCYKEDL
FT                 KASAAEFLFGCTLRLPGEYFFNEDMPPEPDTFLQHFREEIRKIQPVPASHH
FT                 VKKSVFIHKDLFTSSHVFIRDDSVRTPLQPPYNGPYQVLSRTDRNFSIQVG
FT                 DKQQTVSLERLKPAFLLKTEDDPAHDPGPQPPLRTYMGPRARKQVQFSL"
XX
SQ   Sequence 4064 BP; 1243 A; 1032 C; 742 G; 1046 T; 1 other;
     ttggtgaccc cgacgtgatc gtgtagctcg ccgcagttcg cgtgtgtaca gactcgttag        60
     tttcaaagtt tcaagtgtcc aattcgaacg tacatcacct gcatcatgca caactctgac       120
     tctaatggaa cggattcggc ctccgcctca aacagtgata attcggcccc agcaacacta       180
     caacaatccc agacacaaca atccatcgat gaagtgaacg aggtaaggaa tatccgactg       240
     cctcctttct ggaaagcgaa tcccaacctt tggtttgcac aagtggacgc tcaattcgca       300
     actttccgcc tcagatctga tcagctcaaa tatttccatg taatttctgt cttggacatc       360
     gataccctcc aacatgtatc agatctaatt gctaatcctc cggaaaacaa caaatatgaa       420
     tcgcttaaaa cgaccctcat tgatcgatgc agcgactctc aagagcgaca aatcaaaaag       480
     ctactcagcg aaattgagtt aaatgacaag aaaccatcac aattactcag ggaaatgcga       540
     gttttggcca aaaatttcgt cagtgacacc attctacaaa ctttatggct acaaagactt       600
     cctaccaata tccaagtagt cctgtcagcg tcagcagggc tagatctgac gaaaatgtct       660
     gaaatagccg acaaagtcat cgaagtcaca tcaaattctc cagctttcat cgctgaggta       720
     tccagtaagc ccaaacaaaa tctatgtgga tgtgaaggtc aaatttccca gctatcacag       780
     caagtgtctg aaatgtcaga aaagctcgat aacctactca gaaatcgtag cagatctcga       840
     cttaggagtt caagcagagg aacagctctt actgacaaca aggagtattg tttctaccac       900
     aaccaatttg gaaacaaggc aaaaaagtgc aacacaccct gcagcttcaa ccaaccaaaa       960
     aactagacgc accgttggag atagaggagg cagccaacac aggtgtaaca aagcaatacc      1020
     gcctcttcat caaggacaaa gcaactggag ccaactttct agtggacact ggcgccgaca      1080
     tcagcgttct tcctaaaagt tttggtaaga acaacactat caatattgat tttccattac      1140
     atgctgcaaa tggctcaatt atagaaactt ttgggtacaa aattcttact ttaaacttcg      1200
     gcctaagacg cccaattacc tggaaattca tcattgccaa tgttccacgt cctatcattg      1260
     gagcagacct tctagcttat tttggccttg tcgtggacct caaaaatcga aaaatttctg      1320
     attccataac aaatcttcat gttcctggac gttttctacc ctgctctgaa cctgcagtca      1380
     ccatagtgtc aaaaacatca aaatttcacc ttttacttca aaagtttccg gaaattacaa      1440
     atccctcaat agtctccaca gtcaagtcag gatcagtttt ccaccatatt gttaccaacg      1500
     gacctccggt ggcagatcgg cccagaagat taccacctga gaaattcaaa attgcgaagg      1560
     cagagtttgc atacatgatg tcgcaaggca tttgtcgacc ctcagacagc ccttgggcta      1620
     gtcccttaca tctcgtgccc aaaaagacag gtgaatggcg tgtttgcgga gattatcgcc      1680
     gcctcaactc aaaaaccatt ccagacagct atccaattgc ccacattgaa gacttttcgt      1740
     acaaacttca tggaaaacaa tttttttcga cccttgatct ggccagagca tatcatcaga      1800
     tacccgtagc tgaagaagat atccaaaaaa cagctgtcat cacccccttt ggactgtttg      1860
     aatttcctgt aatgactttt ggtcttagaa atgcagcaca aacatttcag aggtttattg      1920
     atcacatact tagagatttt gacttttgct acagttacat cgacgacgtc cttattgcct      1980
     cggacaacga acagcagcac cttcaccatc ttggcctgat tttcaagaga tttcaagatt      2040
     atggactcaa aattaatcct tcgaaatgca cttttggaat gtcacaagta cagtacttgg      2100
     gttacgaaat ttcgtcacag ggaaccaagc ctcttcagtc caaaattgaa gcaatcaagt      2160
     cctacaaaaa acctcagaca gttgtcgaac taagaagatt tttgggcatg gtcaattttt      2220
     atcgaaggtt catcaaaaac gcggcacgga atcaagcact tctaaatgag tatcttcatg      2280
     acagcaagaa gaacgacaag actccaattg catggactct tgaatcagac gaagcatttt      2340
     atagttgcat caacgacatc agtaacgcag cactgttggc acatcccaaa gagaatgctg      2400
     cactcatact aacttgtgat gcttctgatc ttgccattgg ttccacacta gagcaaatga      2460
     ttgatggtca tcagtatcct cttggatttt tctctaagaa actttcgcct actgagaaga      2520
     actactctac atatgacagg gaacttcttg ccatctacga atcaatcaag catttccgtc      2580
     acatgttgga aggcaggatt tttgtcatca gaactgatca tcgtcccctc actcacgctt      2640
     tcaatcagaa gcctcaaaaa gcatcaccac gccaaattcg acaattggac ttcatttctc      2700
     agttcagtac caacattcag tacataccag gtgaacagaa tgttgctgct gatgctcttt      2760
     cccgtttaga tacaatcacc atgccaattt ctgtgtcaac tgaggaaatt gctgagcaac      2820
     agaaagagga tgaagatcta cagtctcttc tatctggaga cgtaacaaca ggactgaatc      2880
     tgcaagcatt ctccctggat tcaaaccaaa ccatcatctg tgacacttca accaacacaa      2940
     tcaggccctt cgtcccgaaa actttaagga gaagagtttt tgatatggtc cataaacttt      3000
     ctcatcccag tgcccgttcg tcaaagcagc aaatcagagg aaaattcgtc tggacctcca      3060
     tgcacagaga tattgtctac tggtgcaaaa catgcatacc ttgccaaaaa tcgaagatcc      3120
     atcgtcacaa taaactaaca cctctgaatt ttcctttgac tgaccagaga tttcaacacg      3180
     ttcacataga cattgttgga ccgcttccac catctcaagg ctaccaatat tgtctaacca      3240
     tgatcgacag gttttctcgt tggccagaag cagttccaat taaagaccag acggctgaca      3300
     ccatcgccaa gacgttctac tcagtgtggg tttcacgata tggttctccc aaaatcgtca      3360
     ctatcgatca aggccgccag tttgaaagta ctctcttcaa ggctttaaca aacttactgg      3420
     gaaccaaacg gatacgcaca actgcttatc acccacaagc taatggactt gtkgagcgct      3480
     ggcatcgctc attcaaggca gccattaagt gtcatcaaac tgctgactgg gtaaatatcc      3540
     ttccaacaat tctactaggc ctcagaacct gctacaaaga ggacctcaag gcttcagctg      3600
     ctgaattcct tttcggttgc accctccgac ttcctggaga atatttcttc aatgaggata      3660
     tgcctccaga accagacact tttctacaac acttccgtga ggagatcagg aaaattcagc      3720
     cagttccagc aagtcatcat gtcaagaagt cagtcttcat tcacaaagac ctatttacct      3780
     ccagtcatgt cttcatacga gatgactctg tccggactcc tcttcaacca ccttacaatg      3840
     gcccttacca agttttgtca aggaccgaca gaaacttttc cattcaagtt ggagacaagc      3900
     aacagacagt ttcgttagag aggcttaaac cagcttttct gctcaagaca gaagacgacc      3960
     ccgctcacga tccaggacct caaccgccac tacgtaccta tatgggaccc cgagctcgta      4020
     agcaagttca attttcccta tgaactttat ccggggggga gtac                       4064
//
ID   Gypsy-42_SiOr-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-281
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 410-410 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 281 BP; 85 A; 59 C; 53 G; 82 T; 2 other;
     tgtgggcgtt ctaacagtat gccttctgac agcccgccac agattagttt actccacggc        60
     aggaaagtag caaccctcaa tggtcgwcca gctgatgtct gtcaatcgag gaagagaaaa       120
     aagaagtctg tggatatatt cgaccttcga cacacacatt ttcgcgctaa aaaaccgaat       180
     tctcatattt tgtaatagtg atttastttg taactactta tcgagttaat taaataactt       240
     aattgtttag tgtgcctaat ttacaacctg taacggccac a                           281
//
ID   Gypsy-42_SpEx-I repbase;    DNA;    INV; 4029 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4029
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4110-4110 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..957
FT                 /product="Gypsy-42_SpEx-I_1p"
FT                 /translation="MDPPTSNLKYGSEASPQKDSQELSAVSYNQRIPPLWR
FT                 NRIKLWFLQFEAIVSAGKLSDKELSELLIRQLDLQDLDEIQDIMFDTKSAT
FT                 ENNRYATMKMRLIETYDESDHTKLERLLSNVELGDLKPSQLLRRMQNLAGN
FT                 NIAENTLRVIWTKHLPPSVRAILAVSETIAKKTELNELAIMADKMLEQLHH
FT                 QISAVHNTSSPSPPAQSTPSMATNHENALLHAKIDMLAKEIAELKTHHSYG
FT                 RQRGRNWRGARHRSRSSNRSPHGNRRRPDSNHRAEYNDKSVCYFHRRFGEQ
FT                 ARKCTRPCTYEDKPLSTSGN"
FT   CDS           936..4028
FT                 /product="Gypsy-42_SpEx-I_2p"
FT                 /translation="APFNLGKLKQVLAETETGTWEKSHRLFLKDKKSNISF
FT                 LIDTGANISVIPGKRCEILKPTAFKLYAANNTEISTFGEKTIDLDFNLRRP
FT                 FRWRFIVAAVSKPIIGADFLKHHNLLVDLAGKCLIDKTTNLSVKTSICKST
FT                 APTIRTIDLEQKYHNILADFPDITRLSTMKNTPKHNVEHHIETTGPPLYCK
FT                 ARPLPPHRYEAAKKEFQTMMDQGLCRPSKSPWASPLHVVPKPNGDLRICGD
FT                 YRRLNAITKPDRYPVPRLKDFTYQLHGKQIFSTIDLNRAYQQLPVREEHIE
FT                 KTAIITPFGLFEFPRMCPGLKNAGQTFQRFIHEVLRGLDFAYPFVDDVIIS
FT                 SSTEEEHRQHLRTVLQRLNEYGITINPSKCVLGKKVIKFLGHTVSPDGIKP
FT                 PAEKVEAIKNFPLPTTIEQLRRFLGTVNFYRDCISKAAEIQAPLNAYLHNS
FT                 KKRDKTKIVWTEEAKKAFELCKAGLQNAALLAHPSHDAPIALMTDASDKCA
FT                 GAVLQQYVHNKWQPLGYFSKTLSSAQVKYSTYDRELLAIYMAVKHFRKMFE
FT                 GRPLIIFTDHKPLTYAINKTSSDSETPRRARQLMYISEFTNDIRHISGQDN
FT                 IVADSLSRINTETITCPTPIDYKQLATAQERDSTIRDLMKESNIQLKRIAL
FT                 PNTKCKILCDTSTQNIRPYVPETFRRAAYESVHNLSHPGTRTTRKLLSEKF
FT                 FWPSMNADAGRWTKACEACQKSKVSRHTTSQLATFPPAERFQHIHVDIVGP
FT                 LPPSQYGHKYLLTIIDRYTRWPEALPLHDITAETIVKKIYEGWITRFGCPI
FT                 TITTDQGRQFESQLFAELMKLMGINRTRTTAYHPQSNGIIERWHRTLKAAL
FT                 TARCTNSANGKWFDELPTVLFGLRAATRSDTGISPAQYTYGTSLRLPGDFF
FT                 VETKRSPMSHDLVEQLRHIINAYRPAEITHSNKNMFVHSDLRTCENVYLRR
FT                 DCTKKPLQPTYEGPYPVLERCDKYYKLQLPGRVTNVSIDRLKPAYTVNEQV
FT                 NDDTQRSTRSGRLVKPVVRFAWGGV"
XX
SQ   Sequence 4029 BP; 1371 A; 1074 C; 804 G; 780 T; 0 other;
     ctggtgaccc cgacgtgatc aatggacccg cctacttcga acctgaaata tggaagcgaa        60
     gcatcgccgc aaaaagattc gcaagaactc tcagccgtgt cgtacaacca gcgcataccg       120
     cctctatgga gaaaccggat caagctgtgg ttcctgcaat ttgaagcgat cgtgtctgct       180
     ggaaaactaa gcgacaaaga gctatcagag ctgctcatcc gccaactcga cctacaagac       240
     ctagacgaaa tccaggacat catgttcgat accaaaagcg cgacagaaaa caacagatac       300
     gccaccatga agatgaggct catcgaaaca tacgacgaga gcgaccacac caaactcgag       360
     cgtctactgt ccaacgtgga actcggagat ctgaagccgt cgcaactgtt acgccgcatg       420
     caaaatttag cgggtaacaa catcgctgag aacacactgc gtgttatatg gacaaaacac       480
     ctaccgccat ccgtacgcgc catactagct gtgagcgaaa ctatagcgaa gaaaaccgaa       540
     ctaaacgagc tagcgataat ggccgacaaa atgctagaac aactccacca tcaaatatca       600
     gcggtacaca acacttcatc accgtcaccg ccagcacaat ccactccgtc tatggctaca       660
     aatcatgaaa acgcattact acacgcgaaa atcgacatgt tagcaaaaga aatagcggaa       720
     ttaaaaacac accacagcta cggaaggcag cgcgggcgca actggcgagg cgcgcgtcat       780
     cgatcacgca gctcaaaccg gtcgccgcat ggtaaccgcc gccggccgga ctcaaatcat       840
     cgcgccgaat acaacgacaa atccgtttgt tattttcatc ggaggttcgg cgaacaagcg       900
     cgaaaatgta ctagaccatg tacttatgaa gataagcccc tttcaacctc gggaaactaa       960
     agcaggtgtt agcagagacg gaaactggca cctgggaaaa atcacaccgt ctatttctga      1020
     aagacaagaa gtcaaacata agctttctca tcgacactgg tgcaaacata tccgtcatcc      1080
     ctggaaaacg ctgcgaaatc ctgaaaccaa ccgcattcaa actatatgca gcaaacaaca      1140
     cagaaatatc taccttcggt gaaaaaacaa tagacctaga cttcaaccta agacgaccgt      1200
     tcaggtggag gttcatcgta gcagcagtca gcaagcctat catcggcgct gattttttga      1260
     agcaccataa cttactagtc gacctcgctg gaaaatgctt aatcgacaag acaacaaacc      1320
     tatcagtgaa gacgtccatc tgcaaatcta ctgcaccaac catcagaact atagacctgg      1380
     aacaaaaata tcataacata ttggcggatt tccccgatat cacacgactc tctaccatga      1440
     aaaatactcc gaaacacaac gtcgaacacc atatcgaaac aactgggccg ccattatact      1500
     gcaaagcacg tccactgcca ccacaccgtt acgaagctgc aaagaaagaa tttcaaacca      1560
     tgatggatca gggattatgc cgaccaagca aaagcccctg ggccagtcca ctccacgtgg      1620
     taccaaaacc aaacggagac ctacgcatat gtggagacta caggagactg aatgccataa      1680
     ctaagcctga ccgatatccg gtaccacgct tgaaggattt cacttaccag ttgcacggta      1740
     agcagatatt ctcaacaatt gacctaaata gggcatacca acaattgcct gtccgggaag      1800
     aacacatcga aaaaacagcc ataattacac cattcgggct attcgaattt ccccggatgt      1860
     gcccaggcct gaaaaatgct ggacagacgt tccaacgttt tattcatgaa gtactgcgcg      1920
     gactcgactt cgcctaccca tttgtcgatg acgtcatcat aagttccagt acagaagaag      1980
     aacacagaca acatttacga accgtcctac agcgactgaa cgaatacggc atcactataa      2040
     atccgtcgaa atgtgtacta ggcaagaaag tgattaagtt cctcggacac actgtctcac      2100
     cagatggcat caaaccccca gcagaaaaag ttgaagcaat caaaaatttt ccactaccca      2160
     caaccataga acaattaaga agattccttg gcactgtcaa tttctacaga gattgcattt      2220
     caaaggcagc cgaaatacaa gcacctctaa atgcatattt acacaatagc aagaaacgag      2280
     acaaaacaaa gattgtatgg accgaagaag ccaagaaggc atttgagtta tgtaaagctg      2340
     gcttacaaaa cgcagcatta ctagctcacc cctcacatga cgcaccgatc gcactgatga      2400
     ctgacgcctc tgataagtgc gccggcgccg tactgcaaca atatgtacac aacaaatggc      2460
     agccactggg ttatttctcc aaaaccttgt caagtgcgca agtcaaatat agcacatacg      2520
     acagagaact gttagctata tacatggccg tgaaacattt tagaaaaatg ttcgaaggca      2580
     gacctctcat aatattcacc gatcacaagc cgctaaccta cgcaataaac aaaacatcgt      2640
     ccgacagcga gacaccgcgc cgagcaagac aactcatgta cataagcgag tttacaaacg      2700
     acattcgtca tatcagcggg caagataaca tcgtcgcaga ctcattatca cgaatcaaca      2760
     cagaaaccat cacatgtcct acaccgatcg actacaagca actagctaca gcgcaagaaa      2820
     gagacagcac tatacgcgac ttaatgaaag aaagcaacat acaattaaag cgcatagcct      2880
     taccaaacac aaagtgcaaa atactgtgcg atacatcaac acaaaatatt cgcccgtacg      2940
     taccagaaac atttcgccga gcagcatacg aaagtgtaca taacctgagt caccccggca      3000
     cgcgcacaac aaggaaatta ctcagtgaaa aattcttctg gccatcgatg aacgcagacg      3060
     cgggacgctg gacgaaagcc tgtgaggcct gtcagaaatc aaaagtcagt cgacatacaa      3120
     caagtcaact tgcaacattc ccacctgcag aacgattcca acatatacat gtagacattg      3180
     ttgggcccct accaccatca caatatggac acaagtacct gcttactatc atcgaccggt      3240
     acacgcgatg gcccgaagca ttacccctcc acgacataac tgcagaaacg attgtcaaaa      3300
     aaatatatga aggctggata acaagatttg gttgtcccat cactataacc accgatcaag      3360
     gtcgtcagtt cgagagccaa ctattcgccg aattaatgaa attaatggga ataaacagaa      3420
     cgagaacaac tgcataccac ccacaatcaa atggaatcat cgaacgctgg caccgcacac      3480
     tcaaagccgc acttaccgct cgctgcacta atagcgcaaa cgggaagtgg tttgacgagt      3540
     taccgaccgt actatttggg ttacgcgcag ctacacgcag tgacacaggg ataagtcctg      3600
     cacaatatac ctacggaaca tcgctgcgat tacctggaga tttttttgtt gaaacaaaga      3660
     gaagcccaat gagtcacgat ctcgtcgaac agctgcgaca cattatcaat gcgtaccgac      3720
     cagctgagat tacgcatagc aacaaaaaca tgtttgtaca ctccgaccta cgtacctgcg      3780
     aaaatgttta cctacgaaga gattgcacga aaaagccact gcaaccgaca tacgaagggc      3840
     catatcccgt attagaaaga tgtgacaaat attacaagct ccaattacca ggaagagtaa      3900
     ccaacgtctc aatcgaccga ctgaagcctg cctacaccgt gaatgaacaa gtcaatgatg      3960
     acacccagag atcaacgcga tcaggcagac ttgtgaaacc ggttgtacgc ttcgcttggg      4020
     ggggtgtac                                                              4029
//
ID   Gypsy-42_SpEx-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-204
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4171-4171 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 204 BP; 64 A; 41 C; 26 G; 73 T; 0 other;
     tgtagcggac atatcatcct cacagataat atagcatgta gggcatatga acaattttga        60
     gttttaacta atttttacat gtacccactg taaacttttt ttctaacaga tttttgtata       120
     aaagacacga catttttcaa aatacattca ttccaaattt acccttcacg tgaatctcat       180
     ttctgtgacc tgcgtatcct gaca                                              204
//
ID   Gypsy-42_TrNi-I repbase;    DNA;    INV; 5976 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5976
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 244-244 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           695..5149
FT                 /product="Gypsy-42_TrNi-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MGRKRKSSRRMSQFDDSNRSESGSPVRRQRKVRRKRT
FT                 RDLSRDSSVSQCRNGSKRRSKSKRHHRTPSRRNRPRDCSTPARHDGLQSRD
FT                 VARDPGAPQRRDVAQDRDPTVSPERMPGRQPLQNEATRMCQPTTGSAATPS
FT                 VSQQVIVNSDADASVLVSAFKEFIQTMKTDGGNERYPVMNVIPEFDPVKRN
FT                 QTIETWLLKVNECAEIYNWTERQIIHYALPKLSGLAQKWYQGLPSLLFSWV
FT                 EWQNKLKMAFPSDENYGQLLTDMLACRARFGDSLEEYFYQKMVLLNRCNIV
FT                 GKNAIDCILFGIDDRSVRTSAEATQFTEPDKLLVYLRNVRSTKKSEKPILS
FT                 LQTGNSEHKHTRPLKFNQNTSDTKSNRPYKQTRCYNCGDEGHPYFLCKKPI
FT                 IRCGSCHRVGHSSSDCPGKTEPKINNNNNKTVLRVTKQNNNESKYFKVAQV
FT                 NGQNFDCYIDFGSQCTMLRESYAKNLVSTWSKSDLPVIRGFGNSIVDCIGK
FT                 CILELKIDSVKASVEVLIIPDHLLQVPLLVGQTFTEQEHIVIYKTNSKLII
FT                 SHIPTTGIHLYVSKSVTVKGLTILEVYSKPDYTGDVFCEPSLCQDPLKPYE
FT                 ITQSLIHLADSHGYIVIKGLSREFVLSKDSLLLRALPLNELRLESLNVKKI
FT                 EHCPDNSNITRIEVEAIQVDPSIGSENILKLTEMLNHFRDCFAFSSKELGC
FT                 ITGTEMNIRLNNTTPVVYRPYRLSHSERQVVRDIVQELEDSDIIRESSSDY
FT                 ASPIVLVRKKSGDHRLCIDFRALNKITIKEHYPLPRIDDQLDNLSGYKYYT
FT                 SLDLASGYYQIPLAEPSKRYTAFVTPDGHYEFNRMPFGLVNAPSTFQRTIN
FT                 NILGNARFKEAFAYMDDVIVPSKTISEGLQKLNDILDLFRSSGITLNLSKC
FT                 NFLKQSIDYLGFEVTKAGIKPGKKKIEAVDKFPRPTDQHKVRQFLGLASFF
FT                 RRFIKGFSIIAKPLTQLLKRDAIWKWGDVEESAFLTLKEELVKRPILSFYN
FT                 PNFETQLHTDASKIGVAGIVLQRSNKESPFSAVAYYSRQTSPEESKLTSYD
FT                 LETLAVVTSLQRFRVYLLGILFTIVTDCNSLRATFEKKDTIPRVARWWNVI
FT                 QEFDFNIIYKPGTAMTHVDALSRNPVLSDSVELHVGHVDTDWVATVQLNDP
FT                 ELQRIVSILNDSENDNVVEIKNNFVIKRGLLYRKTEDGDRWVVPKGVRWQV
FT                 LKSNHDEIGHFGFDKTLEIIKNKYWFSKMRKFIKKYVQSCLQCAHAKIPSG
FT                 KKAGKLHPIEKVDKPFHTLHIDHLGPFVRSRRKNAYLLLIIDAFTKFVILV
FT                 PVKSTKSIHSVAAMRNYFHTFSVPKRLISDRGTSFTSKNFQDYLNSLGIKH
FT                 IMNAVATPRANGQIERYNRTVLAALTATNHGKPDNLWDECVSEIQWGLNNT
FT                 QNKGTGKSPAQALFGLDLVGTSSSLLQLSITDNADNIGNSIENIRREMTEH
FT                 IKDDQDRQKRRFDKVRKEKG"
XX
SQ   Sequence 5976 BP; 1993 A; 1034 C; 1232 G; 1717 T; 0 other;
     gctcagaagt gggatataat cgtgtcaagc gattagaata tcgccctcgg tgaaaggact        60
     taacgcccaa acaagtgagt aaaataacat gatttctcat aataatatac attttttttt       120
     ttgtgtaaac tattatttta aaacataatt taggagtttt aaatatctgg tgtaaactga       180
     gcacaattac gaaataaata gtcattaaag taatgaaaat agaaatcacg tagtcaagaa       240
     taaatttggt atcacaagat ttttatgatt aaacaaaaaa aaaaaaaaaa aactccgtag       300
     cttgtgtata tagtagttat tcttctgatt ttgtaaagaa aataacccaa ctactgtagt       360
     ttaagcaatt gtggtgttga tttaataccc ataatgataa ttacgatagt ttggtagtat       420
     ctacctaccc cactacgtac aattgattgt ttcttgaatt agactgtcag gccccgatag       480
     ttaagagaca caatagaaag acaatggctg tgcggtagac tatctcttgg ggcttgaaac       540
     atttattatt gacttttcat tattctcctt tatttggtat gctataaaga taaaatacgg       600
     tatagtaatc aaaataaaca gaaatcgaca cctaatttca cttgttgagt tttagaacag       660
     ctgcttttgt gatacattgt aattttcaga aaatatgggt cgtaaaagga agtcttctcg       720
     acgtatgtca cagtttgatg attcaaatag gagcgaatct ggctcaccag tgcggaggca       780
     gcggaaggtt agacggaaac gaactcggga cttatcgaga gattccagcg tatcacagtg       840
     tcgcaatgga tcaaagaggc gcagcaagtc taagagacat catcgcacgc ctagtcgacg       900
     taatagacca cgagattgta gtacgcctgc taggcatgac ggtttacaga gtcgggatgt       960
     cgcccgtgat cctggcgcgc ctcaaaggcg tgatgtggcg caagatcgtg acccgactgt      1020
     aagtcccgag aggatgcctg gtagacagcc acttcagaat gaagcaacaa gaatgtgtca      1080
     gcctacaact ggatcagcag ctacaccatc cgtgagtcaa caagttatcg ttaatagtga      1140
     tgcagacgct agcgttttgg tttcggcttt caaggagttt attcagacca tgaaaacaga      1200
     tgggggtaat gaacgttatc ctgtaatgaa tgttattcct gagtttgacc ctgttaagcg      1260
     aaatcaaact attgaaactt ggctattgaa ggttaatgaa tgtgccgaaa tttacaactg      1320
     gactgagaga caaataattc attatgccct tccaaaatta tcgggtttag cacaaaaatg      1380
     gtaccaaggt ttacctagtt tactgttttc atgggttgaa tggcaaaata agttgaaaat      1440
     ggcattcccg agtgacgaaa attatgggca gttgttaaca gatatgcttg cctgcagggc      1500
     tagatttggt gactcgttag aagaatattt ttatcaaaaa atggtgttat taaatcgttg      1560
     caatattgtc ggtaaaaatg ctatagattg tattttattt gggattgatg atagatccgt      1620
     tagaaccagt gctgaagcaa cacagtttac tgaacctgac aaattattgg tctatttacg      1680
     taatgtacga tcgacaaaga agtctgagaa gccaattcta tccttgcaga cgggtaatag      1740
     tgaacataaa catactcggc cattaaagtt caatcagaat acatctgaca ctaaaagtaa      1800
     cagaccctat aagcaaacta gatgttataa ttgtggggat gaagggcacc cttattttct      1860
     gtgtaaaaag ccaattatac gctgcggaag ttgtcatcgg gtaggtcata gttctagtga      1920
     ttgtcctgga aagacggaac ccaaaatcaa caacaacaac aataaaacag ttttacgtgt      1980
     cacaaaacag aacaataatg aatcgaaata ctttaaagtt gcccaagtta acgggcaaaa      2040
     ttttgattgc tacattgatt ttggtagtca gtgtaccatg ttgcgagaat cttatgcgaa      2100
     gaatttagtc agtacatggt caaaatctga tttgcctgtt ataagaggat tcggaaatag      2160
     tatagtagat tgtataggca aatgtattct tgaacttaaa atagattcag tcaaagcttc      2220
     cgtagaggtg ctcatcattc cggatcattt attgcaagtt ccgttattag taggacagac      2280
     attcacagag caggaacaca tagttattta caaaacaaat agtaaattga taatatctca      2340
     tatcccaacc accggcattc acttgtatgt tagtaagtca gtaaccgtaa aagggctaac      2400
     catactggaa gtttactcta aaccagatta cacaggagat gtattttgtg aaccaagtct      2460
     ttgccaagat cccctgaaac cttacgaaat tactcagagt ttaattcacc tagctgatag      2520
     tcatggttac atcgttataa agggacttag ccgcgaattt gtcttaagta aggactcatt      2580
     gttacttcgc gcattgccgt tgaatgagtt gagattagag tctttaaatg ttaaaaagat      2640
     cgaacattgt ccggataata gtaatataac ccgaatcgaa gtagaagcta tacaagttga      2700
     tccctctata ggttccgaaa acatactcaa gttaactgag atgttgaatc attttagaga      2760
     ttgttttgcc ttttcaagta aagaattagg atgcataact ggtacggaaa tgaatattag      2820
     gctcaataat actacacctg tagtttacag gccctatagg ttgtctcatt cagagcgtca      2880
     agtagttcgc gatatcgtgc aagaattaga ggattctgac ataattagag aatcatcttc      2940
     ggattacgct tcaccgattg ttctcgttcg aaagaaatct ggtgaccata ggctctgtat      3000
     tgactttagg gctctcaata aaataacaat aaaggaacat tacccgcttc cgcgaataga      3060
     tgatcaatta gataatctct cgggctacaa atattacact tccttggacc tcgcctctgg      3120
     atattatcaa atcccattgg ctgaaccatc aaaacgttat acagcattcg taacgcctga      3180
     tggacattac gagttcaacc gcatgccgtt tggactcgtt aatgccccgt ccacttttca      3240
     aagaacgatt aacaatattc tagggaatgc gaggttcaaa gaggccttcg cgtatatgga      3300
     tgatgtaata gtaccatcta aaaccataag cgagggatta caaaaactta atgatatact      3360
     agacttgttt cgctcttccg gcataactct caatctgtca aagtgcaatt ttttaaaaca      3420
     atccatcgat tacctaggct tcgaagtcac aaaagcgggc attaaaccgg gtaagaaaaa      3480
     aatagaagca gtagataagt ttcccagacc tacagaccaa cataaagtca gacagttttt      3540
     gggtttagcc agctttttca gaaggtttat caaagggttt tcaataattg ccaagccatt      3600
     gacacaactt ctaaaaaggg atgcaatatg gaaatggggt gacgtagagg aatccgcttt      3660
     cttaacatta aaagaagagc tagtcaagcg tcctatactt tcattttata atcccaattt      3720
     tgaaacccag ttacatacag acgcttctaa gatcggtgtt gctggaatag tattgcaaag      3780
     atcgaataaa gaatccccat ttagtgcggt agcgtactac agtagacaga cctctcccga      3840
     agagtctaaa cttacctcct atgacttaga aactttagcg gtagtgacct cgctacagcg      3900
     cttcagggta tacctattag gcattttatt taccatagtt acagattgta attcccttcg      3960
     tgcgactttt gagaaaaaag atacaatacc aagggtagcg cgatggtgga atgtcataca      4020
     agaatttgat ttcaatatta tttataaacc cggcacagct atgacacacg tggacgcact      4080
     tagtcgtaat cctgtattat cggactctgt agaattacat gtgggacatg tcgatactga      4140
     ttgggtagct acggtgcaac tcaacgatcc tgaactgcaa cgaattgttt caattttaaa      4200
     tgatagcgaa aacgataatg tggtggagat taaaaataac tttgtgatta aaaggggttt      4260
     attgtacagg aagactgaag acggagatcg ttgggttgtc ccgaaaggtg ttcgatggca      4320
     agttttaaaa tcaaaccatg atgaaatcgg tcatttcggt tttgacaaaa ccttagagat      4380
     aattaagaat aagtactggt tttctaaaat gagaaaattc ataaaaaaat atgtacaatc      4440
     ttgcttgcaa tgtgctcatg ctaaaatacc atctggaaag aaagcaggaa aattacatcc      4500
     aatcgagaaa gtagataagc catttcacac cctacacata gaccatttag gtccttttgt      4560
     tcgaagtagg cgtaaaaatg cttatctatt gttgatcatt gatgcgttta caaagttcgt      4620
     catacttgtg ccagttaaga gtaccaaatc tattcactct gtggccgcca tgagaaacta      4680
     ctttcacaca tttagtgttc cgaaacgttt aatttctgat cgaggaacct catttacctc      4740
     taaaaacttt caagattatt taaattctct aggcataaag catattatga acgctgtagc      4800
     aacgccgcga gcgaatggtc agatcgaacg gtataaccgg acggtgttag cagccctaac      4860
     agctacaaac catggcaaac ccgataactt gtgggacgaa tgcgtatccg agattcaatg      4920
     gggactaaat aatactcaaa ataagggaac ggggaaaagc cctgctcagg cattattcgg      4980
     tcttgacttg gtaggcacat cgagttcttt attacaacta agcatcacag ataatgctga      5040
     taatatcggt aattctatag aaaacattag aagagaaatg acagagcata ttaaagacga      5100
     tcaggatagg caaaagcgac ggtttgataa ggttagaaag gaaaaagggt agaaagggat      5160
     attccgtcaa ctggtaacag cagaaaattg attccaaaac ttagaggtcc gtatcgtata      5220
     aaagaagttt tagataatga tcggtacgtt attgaagaca cgccactatc caaaagggga      5280
     aacagagcat ttagtggtat cttttcggta gacaaaattc atccttggat ggtgtttaat      5340
     agggcagatt cagggtcgga aagttcagag aatgaagaaa ctgatgagtt agaaataggt      5400
     taagtatgat gtgtaagcct tagtctctat tatgattgta aattagtata agcagagtga      5460
     ctgagaatat gccagaggtc tcagttacag tagatgttaa ggataggtat gaggccttaa      5520
     tgtttagtat aaagattaac tcaccaaccg gcctgactga gaatatgtct gaggtctcag      5580
     ttaggacaga tattaggaac atgtatgggg tcctagtatc ttagtaataa aaattaacta      5640
     acaaatgacc tgattgggaa tatgtctgag gtctctcagt tattacagat gttaagaaca      5700
     tgtatggggt cttaatatca tagaaataaa attaaccagc aagtggcctg actgagaata      5760
     cgtctgatgt ctcagtcagg acagacatta aggatatgta tgaggccttg atgtcttatc      5820
     agattaatta tattaaacca gtatgtaaga ttgtaaatgt atatgtattc atttacccca      5880
     tattcgatta tgatcataat ttgcattgta caagtataat agacaaggtc tatatattat      5940
     tttcccggga cggtaaatat atcaggaaag gccgac                                5976
//
ID   Gypsy-42_TrNi-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-376
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 198-198 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 376 BP; 118 A; 61 C; 67 G; 130 T; 0 other;
     tgttagaatc ataaacaaaa ttaagattaa tatatactat ttgaaatact gtccgtaatt        60
     attaggaact gaattttgat tttatataat tacatataag aaattataaa tcccaatttc       120
     aatattgtaa acgcgcgcac tacttccggc cgacaacgtc cgttacttgt ttgtctggtt       180
     taaaaatggt ggaagggggt agtgcgcgcg cccaacgaca cttgagctta aactcccaaa       240
     ctggacacac gttctccaat ttggttggcg tttataccgt ggttatctgg tgataaaccg       300
     atttatgata tatgtgaatg tgaataaact gatttatctg taatcttggt attattaatt       360
     tttctgagct cttaaa                                                       376
//
ID   Gypsy-42_TrVa-I repbase;    DNA;    INV; 5106 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5106
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 287-287 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..1049
FT                 /product="Gypsy-42_TrVa-I_1p"
FT                 /translation="MPPPDELLEFYQKTLEELRGQNSKLQNKIEHLSTGHR
FT                 NTQSQIQLELQKKKMSSALKLPPFWPDDPEVWFSQVEAYFKVHNIADESAQ
FT                 FAQVVSQLEARWAHEIKDIISAPPSDTPYSTMKKELIARLTKSEAQRVRQL
FT                 IGEAIIGDKTPSQFLRHLKSVAGNTTIQDNILKSLWLQRLPSQVQGILSAQ
FT                 PEATTLDDLAKIADRIMETLPTPPKPAVYGISQPSYAQEQSATLAAMTKTL
FT                 EQLTKKLESMEAFTRKLETVEDDLRSLRRERSRDRFRSNSRNGQNARNRSS
FT                 SRHNNNYENKPKYDTCWYHFKFGNKAEKCSQPCNFSTNSQGSQ"
FT   CDS           1022..4258
FT                 /product="Gypsy-42_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FLNKLSRQPVVAATDCRTKTHRLFVSDATSNQHFLVD
FT                 TGSDISCFPRRLLAGKRFPTGFELKAANSTNINTYGHLHLNLNLGLRRDFP
FT                 WRFIIADVSTPIIGSDFLAEFQLLPDCRNKALIDNLTNLTVSCKSANISQS
FT                 SIKAIAPGLFTDILEDFPELTRPAGTPREVRHCTFHHIETTPGPPIKSRPR
FT                 RLHSDRLRIAKAEFDAMVKEGTARPSKSPWSSPLHLVPKKEEGAWRPCGDY
FT                 RALNARTVPDSYPVRHIHDFTQNLDGCTIFSKIDLVKAYTQIPVHPDDIPK
FT                 TAITTPFGLFEFMYMTFGLRNAGQTFQRFMDEVLAGLDFCFTYIDDILVFS
FT                 HNEDEHTKHLKIIFERLSKYGIIINVPKSIFSVPDLIFLGYHVSAKGLQPP
FT                 TDRIEALMAFKQPKDAKGLRRFLGMINFYRIFLPKAAEYQAPLNDAVAGLR
FT                 KNDLITWTPEMTNAFNTCKESLAKATLLAHPVNSAPIGLFTDASGTAVGAC
FT                 LQQNVNDTWQPLAFFSKKLSEKQSEWPAFYRELFAVYAAIQHFRHNLESQH
FT                 FTIFTDHKPLTYAFKQRKDKLPPVQLNHLSFISQFSTEIQYVAGEANVVAD
FT                 AFSRIEEITNPEPVNLSILAAAQTEDEELHKLLDSESSSLKLQLVTIPGTD
FT                 IQLYCDDSPKPRPYVPTAHRRQVFNALHSLNHPGVKATAKLIASRFIWPRV
FT                 RQDCQTWARACQACGRAKVSRHVSAPLGDFQPPSARFQHVHIDLIGPLPPA
FT                 GPYSYCLTAVDRFTRWPEVWPLQSITAQEVAEGLLMCWISRFGCPERITTD
FT                 QGRQFESELHHHLRKAIGAIRIRTTSYHPAANGMVERFHRHLKSALMCHPH
FT                 MTWFEALPLVLLGIRVSFKEDLKASSAELVYGEPLRIPGELLSPAASNSSE
FT                 SAPELISRLRNQMAELRPVPAARHAKPNTFIFKELKDCTHVFLRDDTVRKS
FT                 LQPPYSGPHQVLSRDDKTFNLLLKGKTVKVSIDRIKPAYVLSSDSSTDKSQ
FT                 PKELIKPSRKQNPAPSQNTATSQNDHANEANLPPKPTYQTRSGRHVKFRFP
FT                 PLSLVSTISATNQNASRQINFV"
FT   CDS           4340..4930
FT                 /product="Gypsy-42_TrVa-I_3p"
FT                 /translation="MKTNQAVSPCSRFSKHKDARLLRSLSWSLPLDTAGCI
FT                 IPHTGRRRNNNNQEDLAHFEIATDFRQQAPLYFTIQAPPVLLNQIYDNTSR
FT                 SPYLCPRCKNCSNSCTMARKDCQHESCPCTGAATSLRVNIRPLEKDLEAYL
FT                 HATVSKANTSDIKQRCLENCPTKLRPKLTKIMTHNSFLEFTAWRCCKLGEF
FT                 KLQPHYF"
XX
SQ   Sequence 5106 BP; 1522 A; 1423 C; 946 G; 1214 T; 1 other;
     ttggtgacct cgactgaaga cgcaagaccc tctctgttct ctccatgcct ccaccggacg        60
     aattattgga attttatcag aaaacattag aagaattacg cggtcagaac agcaagctgc       120
     aaaataaaat tgagcatctc tctacaggac atcgcaacac gcaatctcaa attcaactcg       180
     aactccaaaa gaaaaagatg tcttccgcat taaaacttcc tcctttctgg cctgacgacc       240
     cggaagtatg gttttcgcaa gtcgaagcct acttcaaggt acataatatt gcagatgagt       300
     ccgctcagtt cgcccaagtt gtatcccaac tagaagcgcg ctgggcccac gaaataaaag       360
     atattattag tgcacccccc tctgacacgc cctattcaac aatgaaaaaa gaactcattg       420
     cccgactgac aaaatcagag gcgcaaagag ttcgtcagct cataggtgag gcaattattg       480
     gggataaaac cccctcccaa tttttaagac atttgaaatc tgttgcaggt aatactacga       540
     tacaagataa tattttaaaa agtctctggc ttcaacggct gccatcgcag gtacaaggaa       600
     ttttgtcagc ccagcccgaa gcaacaacat tggatgatct tgccaaaata gctgaccgta       660
     ttatggagac gcttcccact ccgcccaagc cagcggtcta cgggatcagc caaccgagtt       720
     acgcccaaga acagtcagcc accctagccg caatgactaa aaccttggag cagctcacta       780
     aaaagctcga aagcatggaa gctttcaccc gtaagttaga aactgtagaa gacgacttac       840
     gctccctcag acgtgagcga tctagagacc gtttccgttc aaactcacga aacgggcaaa       900
     atgcacgtaa taggtcgtca agtcggcata ataataatta tgaaaataaa cccaaatacg       960
     acacttgttg gtaccacttt aaatttggaa ataaagcaga aaaatgttcc caaccctgta      1020
     atttctcaac aaactctcaa ggcagccagt agtggcggcg actgactgcc gtaccaaaac      1080
     tcaccgccta tttgtttcag atgcaaccag caaccaacat tttctagtgg acacaggctc      1140
     agacatcagc tgctttccac gacgcctctt ggcaggaaaa cgctttccaa cgggatttga      1200
     acttaaagca gcaaatagca cgaacataaa cacgtacggc catttgcacc taaatctcaa      1260
     cctaggccta cgacgcgatt ttccctggcg tttcatcatt gcagacgttt ccacacccat      1320
     cattggatct gattttctgg cggaatttca attacttccc gattgcagaa acaaagctct      1380
     gatagataat ctcactaatc tcactgtctc ttgtaaatct gccaatattt ctcaatctag      1440
     catcaaggcc atcgctcctg gacttttcac agacattctt gaagattttc ccgaacttac      1500
     acgcccggcg ggaacgcccc gtgaagttcg gcactgcacg ttccatcata tcgagacaac      1560
     gcccggccca ccaatcaaaa gccgaccgag acgtctccac tcagaccgtt tgcgaatcgc      1620
     aaaagctgaa ttcgatgcaa tggtcaaaga aggaacagcc agaccttcca aaagcccatg      1680
     gtcatcccct ctccacctcg tacccaaaaa ggaagaaggc gcttggcgac catgtggcga      1740
     ctaccgtgct ctaaacgcaa gaacagttcc agattcatat cctgttcgtc acatccacga      1800
     tttcacccaa aacttagatg gttgtacaat tttcagcaaa atcgacctcg tcaaggcata      1860
     tacacagatc cctgttcacc cagacgacat cccgaaaaca gccataacga caccattcgg      1920
     gttattcgaa tttatgtaca tgacgttcgg cctgcgcaac gcaggccaaa cgttccaacg      1980
     ttttatggat gaagtacttg ccggccttga tttttgtttt acctatatag atgatatcct      2040
     tgtattttca cacaacgagg atgaacatac gaaacaccta aaaattatct ttgaacgtct      2100
     ctctaaatat ggtattatta ttaatgttcc taaaagtatt ttctctgtac ctgatttaat      2160
     ttttctaggc taccatgtct cagcaaaagg actccagcct ccaaccgatc gcattgaagc      2220
     cctaatggca ttcaaacaac caaaagacgc caaggggctc agaagatttt tgggcatgat      2280
     taatttttac agaattttct tgcccaaagc cgcagaatat caagcaccat taaacgacgc      2340
     agtggctggc ctacgcaaaa atgatttaat cacatggaca ccagaaatga ccaacgcatt      2400
     caacacatgc aaagaaagcc tcgccaaagc aactctcctc gcccaccccg tcaattctgc      2460
     accaatagga ctctttactg atgcatctgg tacagccgtc ggggcatgcc ttcaacagaa      2520
     cgtgaatgac acatggcaac ctttagcatt tttctccaaa aagctcagcg agaaacagtc      2580
     agaatggccg gcgttctacc gagaactttt tgcggtttac gctgccatcc aacatttccg      2640
     gcacaatctt gaatctcagc atttcacgat tttcacagat cacaagcctt tgacatatgc      2700
     gttcaaacaa cgcaaagata aattaccccc tgttcaatta aatcacttgt cttttatttc      2760
     tcaattttcc acagaaatcc aatatgtcgc aggtgaagcc aatgtcgtcg cagatgcatt      2820
     ttctcgaata gaggaaatca caaacccaga accagtcaac ttgagcattc tcgccgcagc      2880
     ccaaaccgaa gatgaagaac ttcacaaact gttggactcg gaatcatcat cactcaaact      2940
     gcaactggtc acaatccccg gcactgacat tcaactttat tgtgacgaca gcccaaaacc      3000
     acggccttac gtcccaactg cacacaggcg ccaagttttc aatgcattac atagtctcaa      3060
     ccatccggga gtcaaggcaa ccgccaagct gatcgcatcc cgtttcatct ggcctcgagt      3120
     caggcaagat tgccagacct gggcccgagc ttgccaagcc tgcggacgag ccaaagtatc      3180
     gcgacacgtc agcgcacctc tcggagattt tcaacctcca tcagcccgtt tccagcacgt      3240
     acacatcgac ctgatcggcc cactaccccc cgccggaccc tacagttatt gtttaacggc      3300
     ggtggatcga tttacacgct ggcccgaagt ctggcccctg caaagcatca cagcgcaaga      3360
     agtagccgaa ggtctcctga tgtgctggat ctctcgattt ggctgccccg aacgcatcac      3420
     aactgaccaa ggacgccaat ttgagtctga acttcaccac catctgagaa aagccatagg      3480
     cgccatcaga atacgcacaa caagctatca tccagccgca aatggaatgg tcgaacgttt      3540
     tcatcgccat ttaaaatcag ccctgatgtg ccatcctcac atgacttggt tcgaagccct      3600
     tccactggtt ttactcggaa tacgagtgtc attcaaagaa gatttgaaag cctcatctgc      3660
     tgaactcgta tatggtgagc ccctccgaat tcctggcgaa cttctgtcac cggcagcatc      3720
     caacagctct gaatccgctc ccgaattgat aagccgactt cgcaaccaaa tggcagaact      3780
     acggccagta cctgctgccc gtcatgcaaa gcccaacacc tttattttta aagaattaaa      3840
     agactgtacg cacgttttct tgcgtgatga cacagtcaga aagtcgttgc aaccgccata      3900
     ctctggccct catcaagttc tcagtcgtga cgacaaaaca ttcaacttac tacttaaagg      3960
     caaaacagtc aaggtaagca ttgatagaat taaacctgct tatgtcttat cctctgattc      4020
     tagcactgat aaatcccaac caaaagaact gatcaagcca agccggaagc aaaatccggc      4080
     accatcgcaa aacacggcaa cgtcgcaaaa tgaccatgca aatgaagcca atctcccgcc      4140
     aaaaccgacg tatcagacgc ggtcagggag gcacgtcaag tttcgtttcc cgcctttatc      4200
     acttgtctcc accataagcg caaccaatca gaacgcttct cgccaaataa atttcgtata      4260
     aatagcacct gtttctaatt aatttctcat tagctcatta gcatatctac cgttttcttg      4320
     taccttttct tcagtaatca tgaaaaccaa tcaagcagta tctccttgca gccgcttttc      4380
     caagcataaa gacgctcgac tcctgcggtc actctcctgg tctctgcctc tggacaccgc      4440
     cggctgcatc attccacaca ccggccgaag acgcaacaac aacaaccaag aggacctggc      4500
     acactttgag atcgccacag atttcagaca gcaggcaccc ctttatttca ccatccaggc      4560
     accgcccgtc ttactgaacc agatctacga caacacgtca aggtcgccct acctgtgccc      4620
     cagatgcaaa aactgctcga actcatgcac catggccaga aaggactgcc aacacgaaag      4680
     ctgcccctgc accggcgctg caaccagcct tcgtgtcaac atacgccccc tcgagaagga      4740
     cctcgaggcg tatcttcacg caacagtgtc caaggccaac accagcgaca ttaagcaacg      4800
     ctgcctcgaa aactgcccta ctaaattgag accaaaacta acgaagatta tgactcacaa      4860
     ctccttcttg gaattcacag cctggcgttg ctgcaaactg ggtgaattca agttgcagcc      4920
     gcactacttt taaaaaaatg aactatcaac ttttaaaaaa aaaaaaaaaa aaaaaaaaaa      4980
     awaataatct gctctttcgt ttttctcaaa attttactat tatttttttt cttcgtctcg      5040
     catttttttt ttttgtttgt ataaaataac ttgttccagg aacttttttt ctccgaaggg      5100
     ggctgg                                                                 5106
//
ID   Gypsy-42_TrVa-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-42_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-375
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 346-346 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 375 BP; 78 A; 130 C; 71 G; 96 T; 0 other;
     tgtggcggct tttcccgcca aaaccgcaca cttgctgcgc accatctcta gctccgcccc        60
     ccgggaccaa ttcccgcgcc aatcaacttt tcccgcgcaa actactttcc cgcgcttcgt       120
     ggcgggtata taaggtgctc catccgctta gaagatcagt ccagctcgca ccaccagaca       180
     gaacgcacct ctctcagagc cgatctctgg catttttgga ctctcggact ctgcagctca       240
     ctgatccttc catcctccat cgctgtatat gctggttcct tcttatgaag tcgaaccggc       300
     cagcacctct ttgaaaacgg cccttttcag ggccaccaat tcttttctga ttacagagca       360
     cctaatatat ccata                                                        375
//
ID   Gypsy-430_AA-I repbase;    DNA;    INV; 5897 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-430_;
KW   Gypsy-430_AA-I; Gypsy-430_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5897
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5897
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2048-2048 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5897 BP; 1826 A; 1138 C; 1458 G; 1475 T; 0 other;
     atggcgcagt ggacgctccc gtccggtaag tatcgaaagg tgtgaaactc cagttcaata        60
     aactgtgcta aaagtgatgg gaaccatgac aagaaatatt ccgaataaac taagatggcg       120
     gacattgtac agttgtgaaa gaaacaacca cgtgtgaaga aagcatttca tgcagatgtg       180
     acttggaggt tactactgac gaaggtattg agttggaaaa tggcgagagt aaaattatgg       240
     ctggtagtga ttcgtgagta atgaaaaatg gcggacaatg tgctatacat tttatcaagg       300
     tctgcttaat aaaatttgta tggaaaagtt gaaatttttt aataatttcg acaattatag       360
     gtgctatttt ttcttcgagt aaaaaaaagt aaaaggaatc gtttgatgct aatgtaactt       420
     ggtagtgatt acggctgaag gattgaaatt gaaaaatagc gaaagtttaa ttatggctgg       480
     tagtgattcg tgagcaatga aaaatggcgg acgatgtacc ttacatttta tcagtggcct       540
     tcttgatgga attcgtacag taaatttgaa gtttttttta atgttttcta aaataagggt       600
     gcttttttaa tacaaacgca aaaaaaaaac aaaaatggag cgagaggact cctacaaaaa       660
     aaaaaaaaaa tgagtgaacg ttgagcgaga ggactctaga gagaaaaaag aagaaggttg       720
     gagcgagagg actccattgc aaagggagcg agaggactcc attgcaaagg gagcgagtgg       780
     tctcccgaaa tggtaaaata tatagcaaga gcacaaaaaa aaggcggatg acttaaaaaa       840
     aaagagagag aaatgagaat aataaaaaac ggattgaaaa attgattgag cacatttcaa       900
     aaataatata aattaatcga aaacaaatga aatcgtattc taagtgcaat ttatttatta       960
     tttgttctat aggaaaatga agaagaagaa tcccaaaatg gacacgattt tgaaggaact      1020
     ggaggtagag aagtcggcta gagccgaact gagtaagcag ctggaaaagg ccaacgaaac      1080
     cataaaggca ttgcagatga gcctacggtc accgagaagt gagagtgtag acagcgcggc      1140
     gtttgagcaa aatgccggtc cttccagtac ccaacaccac agggccgaag cggacgctga      1200
     aagatctcga tttgtgacga ccgtcaatca aatgtccatt tcggccatta atgtaccaga      1260
     gtgcaagcca tccgtgatcg gtgagcaaat tggacgtcgc gactatgaat tgtggatcga      1320
     ccttcttacg gattcattga agttggccgg cgtggacgat gagccaacca aattcgtggt      1380
     cttcaaagta aaggctggac cattgctgtt ggatattttc aaaaacacta aatcgagccc      1440
     ggatggcccc agtgaggacg aactaccgta ttcgaacgct ttgagcagat tgaagattta      1500
     ttttgggtcc gcatcagata taatgctgca acggcgcaag ctggcattaa tggtgcaggg      1560
     cccggaggaa tccgatttgt cattcatcat gagagttaac tcgattgcgc gattgtgcga      1620
     ttacaaggaa gggaaggaat tcgaagaaat tgtgagtgct gtcgctacac acgcgaagaa      1680
     caaggacgtt cgtatcgtgg ccctaaagat gctcaaccgt cagggatcat ttaccgagct      1740
     agtggatgct gttcgagaga tcgaggctgt gaagatgaac gaggaatatt atcgtatgca      1800
     gcatggtaag cctgagcaga tgacagtggc agcggttagt gccacttttc cgagagcaga      1860
     tacatcccgt cgaggtttca atcgccgtcc tccttatcgc ggtagatatg gacaaccata      1920
     tgctggccaa tctagatttg acgcgcgccg ttcatcggat ctcggaggaa ggaacaccca      1980
     gaaagcacag gcggaccgat gcttcagatg tgatagtgtt tatcacaaag cagaagattg      2040
     tttcgccatt gataagactt gccttaaatg tggtcgtaga ggccacattc taagagcatg      2100
     tcgctcattt aagactgaac agcctcaccg atcaggaggg gatgatcgaa ccatcaagcc      2160
     tgaaatggtg gcttctattg aactggacga cgcagctaag acagaagaac gagcggatga      2220
     aaagaatgta ggtgttgacg ttgcgaagta acatgtcggc gtttgcagac tttgatttac      2280
     cttggaaatt cttatttgat tgtcatttgt tttcacacat ttataagctg aattcgataa      2340
     tttgaataaa ctgaaatcta aatttattac ttaagagtat ttcctagtat atcattgtaa      2400
     tgacacgaca attaatgttg tattagtagt aatcaaatga ttttttttgt ttttccagtt      2460
     gcttgtcgcg acgtttacag cgacaaatga agcaactgac gagagcatta taagagctac      2520
     ggttgcagga ttacaatgcg agttcctcat tgactcgggg gcgcaagtaa atacaattac      2580
     ggatcagcgt tttgccacat tatgcgaaga tgagaaatac agaagagaac tgttcaatgt      2640
     gcagaatagt accgatcgtc ctctaaaagc gtatgcgacc tctggtgaga taccagtgct      2700
     agccactttc gaagctttca tgcacatatc cgacaaccgg cctactttac tcgaaaaatt      2760
     ctacgtggtt agagaacgcc aatcgctttt aggacgagca acggcaacca ggtatagtgt      2820
     tctgctattg ggattgcaag taccggtatg ttcaggtcga tgtttgtcca attcctggta      2880
     tgaagcaaac gaaattgcat cagtggcggt ggaggaaaag tttcccaaat tcaatatccc      2940
     gccagtaaaa ataaattatg accggacaag accaccatgt cgcaacgtct tcatgaatat      3000
     cccagtagct ctgaagccat tggttgagaa acgactgcaa cagcttctcg cttcgggcat      3060
     tatcgaagaa gtaactgacg atatggagaa cttgttctgc tcgtcgatgc tagcaatacc      3120
     gaaaggaaag gaggatataa gactagtgat tgatcttagg ggtcccaaca gttacattca      3180
     gagatctccg tttgctatgc caagcttgga aaaaatccta gcggaaattc atggcgcaca      3240
     gtggttctcc accatagaca tgaccaacgc atattttcat atcgaactcg aggaagaaag      3300
     tcgtcacctt acaaatttct gcacagaatt tggcatgttt cgatgcgtca ggttgccgtt      3360
     tggattgtgc aacgcacctg atatcttcca agaggtgtta cagcgaaaga ttctgggagg      3420
     ctgtcgaggt gtaaaaaatt atcttgacga catctttatt ttcggaaaga cccctgaaga      3480
     gcatgacgag aacctcgccg cggtaatgac tcgccttcgg gaacacaacg tgaaaatcaa      3540
     cgaatcaaaa tgtgttttca agagtcaatc cgtgacattc attggattca agatcacccc      3600
     cgatggatgg cagatcgagg aagagaaaat gcgagcaatc gaggagttca gaataccgga      3660
     gacaatcggt gaagtgaaaa gcttcctggg actcgtaacg ttcgttgata agtttgtgcc      3720
     acatcgagca acaaggactg agaaactgag agcgttggca aacgccgaaa acttctactg      3780
     gtccgaggca gaagacgtag aatttcaagc ctttaaacag gaagccttga agactattaa      3840
     gacattggga tatttcaaga cttccgatag gacagaaata tttgtcgacg cgtctgctgt      3900
     cggacttggg gctgtgctaa tccaattcaa cgacaaagga gtaccgagga tcattgcgtg      3960
     tgcatccaag gcacttacga ccaccgagca gagataccca cagacacacc gggaagctct      4020
     ggctgttgtc tggggagtcg agcggtttgc gtactatttg tccggcagaa ctttcgtcat      4080
     tagaaccgat gctgaagcga atcaatttat tttcggtggg aagcatcgca ttggaaaacg      4140
     ggcggtttcc agagcggaag cgtgggctct gcgattgcaa ccgttcgatt ttactattga      4200
     gcgagttcca ggtgaagttg ggttcatgtt cagctaacaa ttaaaactaa cgattatctt      4260
     gttaatacag gtgaacaaaa tgtggcagac gttctatcga gactgtttcg gagtacacat      4320
     gaaccggtac cgttcgaaga taactgcgaa aaccatgcac ttttcgcgct ggatacgggt      4380
     agcatggata tttgcttggg agacattgaa gcggcagccg acgaggatga ggagctgaaa      4440
     gaagtaatta atgctctgaa atatgacaaa tggccacgag cattgaggaa atatgaagcg      4500
     cagaagaaca gccttcatca tctaggctca ctggtctgta aagacgatag aattgttttg      4560
     ccttcgtctc tacgcagacg agctatggaa gcagcacatg gtggacacgt gggacaagtc      4620
     gccatgaaaa gaatcatgcg cgagttcttt tggtggccac gcatggcttc tgaaactgag      4680
     cagtttgtta aagactgcca aacttgttgt atgctttcca ggaaaaatcc gccgctgccc      4740
     atttcttctc gtgatcttcc tgggggaccc tgggaaatag tacaaacaga ctttctttca      4800
     atcccaggat acggttcagg ggacttcctg accgtagtcg acacgtactc tcgctatctc      4860
     tctgtagtag agatgaagcg caaaaacgcg gattctacta acgctgcgct tatcgaaatc      4920
     tttaggcctt ggggttgccc acgcatattg cagagcgaca acggtccacc ctttaacagt      4980
     tcaacgtttt gttctttctg ggagaataag ggcgttaatg ttcggaagtc gattccatta      5040
     agccctcaat ctaacgggct cgtggaacgg caaaatcaat ctataatcaa agcgatatcg      5100
     gcctccacca tagacggctc taattggcgt agaagcttgg aaacattcgt gcataatcat      5160
     aataccctga tccctcacgc aagacttaaa gtcactccat tcgagctatt ggttggattc      5220
     aaatatcgtg ggcaattccc cagcctttgg gacgaatctc agtcaaaaga attggatcgc      5280
     gaaaacatac gagaactgga cgctgaggcc aaattgtata gcaagcacta tgcggatgag      5340
     gtgcgagggg caaaggaatc cggtatcaag gttggcgatg tcgtactttt gagccagcaa      5400
     agaaactcca aaagtgatcc aatgttctca tccgaacggt tcactgtaat aacacgcgta      5460
     ggagcaaaag tagttgttgt gagtggaaat ggagtgcagt acacgcgaaa tgtgcaggat      5520
     gtaaaattgg ccccgtctgc gaaggatttg gaaattccgg atagtacagc tgcagatgaa      5580
     gtacccctgg aggatgcagg aatggttata gttcccgact gtgagtcgga taatctgctt      5640
     gtaagtcctg caccgcggaa tatcaatact gaggatcgta tcaagcttcg ccagcgatct      5700
     aacataaagc gaccggctcg actaaacgat aactatgttt atagtattta ccagtagacc      5760
     cgtttcacgt gaagtttcac atacggttgt aacgatcaaa acaaaacaaa aataaatata      5820
     agtaaaatat agataacttg aaaactataa agctttgttt tcaatttggg gaagtaaaga      5880
     gtagaggcgg ggaatat                                                     5897
//
ID   Gypsy-430_AA-LTR repbase;    DNA;    INV; 1055 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-430_;
KW   Gypsy-430_AA-I; Gypsy-430_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1055
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1055
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2065-2065 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1055 BP; 313 A; 202 C; 309 G; 231 T; 0 other;
     tgtagtagat aaaaacgaca taatgaaaaa ttaaaagatc aactaatttt cagtgtggtg        60
     gctttagtat gcatcaacta taccacgacc ggaaatacct gttgaagtta aaaatgagag       120
     aataaaaccc ataaggctct agttcgattc gtcggaatat ccgccagtgg taggcgacag       180
     ccgagaacga tcgtagaaac gatgcatttc aatgtaagtg agagggagag tagttgttcg       240
     ggtttgcctg gagctatgat gaattcaagc ccggcgcgct tctcgacatg tcagacaaca       300
     gcccgagtga atcaaccttc ggcccgaatc tttctgtgga ggtacattcg gggcgaaaag       360
     ttcatgttcg cgtgagcgga gcaaacgaga gatgtgattc ggcaagcaaa caagatcgga       420
     tctcgcctcg tagagtcgag ctggaagcga gcgtgcttca gtataaaccg ctctaacgtg       480
     agagagagag agagagagag agagagagag agagagagaa agagagtaaa acacgagcag       540
     ggtgctctcg gatggataga cgctgggggt agcgggcgtt gtaccgtcgg gacgaacaac       600
     aaatgttcat ctgggcagag caaacgcgag aggtggatcg ggaatatcgg gtctcgtgga       660
     gtcgggcgga aagcgagcgg gtttcagtat caaccgctct aacgtgagag taaaacccga       720
     tctcacggaa ggatgctctc ggacgctggg ggtcgccgtc gtggaaggta caatcgagat       780
     gaaaagtaaa tggtggtatg gctcgggcaa aaacgagagg ggattcaaac actctaatgt       840
     gagagagtga aacccgatct cgctctcgga cggaaagacg ctggggtcgc ggttgttaaa       900
     acgacgatcg catttcattc tgttagcgaa agttgagacg tttggacgcg tttaaagtat       960
     cgtctgattt gccattaaat catccgagta aattcagttt cctttcaaaa attacattcc      1020
     tctttttttg acgatggcaa gtaagcggca cgaca                                 1055
//
ID   Gypsy-431_AA-I repbase;    DNA;    INV; 5960 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-431_;
KW   Gypsy-431_AA-I; Gypsy-431_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5960
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5960
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2049-2049 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5960 BP; 1863 A; 1118 C; 1465 G; 1511 T; 3 other;
     ttggcgatcc tgccaaawcc gacgagctga ggacggatat tcgattggct tttaaataag        60
     gcctgggtca ggtaggtwgt gcgcatatat ggcaaaacaa tttgttaaat tatttgtttt       120
     atatgaaggg gaatgtcttc ttcttcttat ttctggccaa ccggtaccgt tcggaaaaag       180
     gggaagtata tataaaaaca cggggagaaa tcgtggggaa cagttggaaa tgttggcatg       240
     gttgccaaaa cagacaatta aaatgcattt ttaataaata aaatactaaa cgaagtatca       300
     gtataaacct gcgctgagtt cagctcaaag ccatgtttaa aaaaaaaata ataataataa       360
     taagaaaact tgcgctgaga taagctcaaa gccaagtaca taacagaaag ccttgcgctg       420
     agttaagctc caagccaagc aaaccattga cgaaattaaa aatatgcgct gagttgagct       480
     caaagccatg caaaaacaaa aaaaatcttg cgctgagttt agctcaaagc caagtaccga       540
     actaagtttt gcgctggggt aagcccaaag ccaaatgaac catttgtgaa aattacgaaa       600
     acatgcgctg agttgagctc atagccatgt atagaaaaag aaatacttgc gctgagttta       660
     gctcaaagcc aataaaaaaa aaaatcttga ggtaaattca cattacaaaa aaaaagtttt       720
     tggatatcat aaccaaaatt aataattccg cgaatgaatt caatattaaa ttttgcggga       780
     tgaatcggca acactggtgt ttgacagcat tcaatgggac acgtagaaat gaaacatatg       840
     cttctacaga ttcaatgatt gaataacaat gtaaggaaga aagtaagatg ggagagtatt       900
     agtgaagact ggaaaggtaa acacaaatgg tgacgtcatt ttcgcctgag ttttcttgtt       960
     ggagctaatt tttccataat tgtgacaaat gcatgatgaa tcacactcac agagattatt      1020
     tttctttcac cttcagtagt ggactgtggt tgtaaatatt ttgcataggt tttcggtcgg      1080
     catcactgtg tcgggaatga ttgaaaagtg aagttaaaag tgattacgga tggttttcgt      1140
     ttgtgaaaag aaaacaaaat acggtgattt tcaatttact actgtgaacc agcgaagtaa      1200
     tataatcaca aatttgagtg atgattggca aataaaacgt gtaggaaatc aatttatttt      1260
     gcagagatga gtggattttg gcatgaaacg gacgtttcgt caagcgatga cactggcgat      1320
     gactctaagg atgttccggc aaaggtggcg aagcacgacg tccggatgaa aacatcgagt      1380
     tcagaaaaca gtgtaactac gaaaactgag tggctctccg gttcgtggcc gttgaagcag      1440
     ttcgatgggt cgttgcctac aaataaaaga aaggcagaat gggtgcgata ccgtgatcag      1500
     tttgagcgta tagtctcttg caaggcgcag gttaattcaa caacgaaatt gactgggttg      1560
     aagatcttcg cttctgctaa gattatagag atgcagcaga agtcagtacc ggattcatca      1620
     acagacgttt atcgagatac gattacagct cttgacaagt acttcagtca gacgtgcgat      1680
     gcggcaaagg agcgaatgaa attccgagac atgcggatga aacctgcgga aacattttcc      1740
     gattttgtcc ttcggttgga aaaccaagct aggttctgtg atttcgggcg tgaacaaaga      1800
     gaggaagaat ttgtacaagc acttttacgg cgggctgtcc cgggtattgc agagaagcta      1860
     tacgagatgg cagagttcct tggaaatgat ttggaacgga tcatcaatca tggaaaacat      1920
     ctggattaca taagggcgga agcggaagag ccgaagatgt cagcagcaga atctcgacag      1980
     aacgatactc cagaacggga ttcagcacat cccacggagg cggtcaatgc tgttcagatg      2040
     tggaagcaga attttcggaa aggtcaggtt gcccatcaaa agtattcagg cgagcgaaac      2100
     gattacagcg actacggatc acgtaaacgt acctgggatt ccagacaaca ggggcgtcgg      2160
     agctgccaaa attgtggcag agttcatggt ccaagggaat gcaaagcttt tcgtgcgaag      2220
     tgctacaact gcggcaaatt gaaccacttt gcggaggtct gtttttcatc cagaaaaaga      2280
     acagcgaacc ctcaaaatcg gcagaatttc ggtccaggag gagacttgaa aaatgaagct      2340
     gggataataa atcaggtaga tgatgcatga tttgctattt gcttatattt tcatggatta      2400
     gccagtgtag atccttaaag aaaaaaaaaa gagaataaat aaaatgtggg atttctatca      2460
     gcttacgtag ttgtttttac ctcattcgtc attacagctg attacaggcg atgctaagac      2520
     tgtgaaagga atagacgatc aaagatttgt ctactgcacc atcgggagcc aacggattat      2580
     gtttttagtg gactcgggtg ccatggttaa tacaatcacc agtagtgaat gggacaggat      2640
     caagcagaac tgccgtacgg tcgtacaaga tgttatggtg catcccgaag aggttctcaa      2700
     gagctatgcc aatcatagtc ctctggaagt tgagtgttct ttcagagcat atgttggggt      2760
     tacagacagc aatcaacctg tgcttctggc caagttcttt gtggtgaagg gcacgaaact      2820
     gtcacttctt ggatacgaaa cggcttacac gatgggcctg attmgtattg gaaaagactt      2880
     agaaaaagag aggtagggtt tttttttttt aattttcagt agcagtattt ttttatgata      2940
     atctatggag aaattaatca attgagaata tttgattttt aaacaataga tacataaatt      3000
     ctaccggtct tgacgaagct acagctggag ctgacaagga gtttcctaaa attccagcta      3060
     tgggggtacg atttaggatc gatgaatcgg taccggtgaa gcagatcata aggtataata      3120
     ttccaaaggc gtttgagaca gctacgaacg aaaggttaag gtccatggat cgtagaggga      3180
     ttatagagag ggccgacaaa gaacacgata taatctcata cgtttcgcca ctggttctag      3240
     tgccgaaagg gaataacgat tttcgcatcg tggtggatta tcgagcggtc aataaagcga      3300
     taattcgtga gccctacccg atgccgtccc tggaaaagat ttgggctgat atcccatgcg      3360
     gcggaggtac gttattcttt agtaagttgg atctaaagga tgcgtacttc catgtcgagc      3420
     tactggagga tgtacggcat tatacgacat ttatgaccgc aaatggcctg atgcgcttca      3480
     agagattgcc gtttgggctc tcttgtgcgc cggaattatt ccaaagagta atggagcggc      3540
     tgttgattaa ctgcaaaaat atcatcgttt atcttgacga tatattgatc tacgcgctta      3600
     ccttggaaga attagaagca cttgtagctg atgtcaaaag agttttgaag aacaataacc      3660
     taacgataaa tgaagagaag tcggtgtata accaaacatc cgtcgaattt ctgggttttg      3720
     acatcgatgg atccggcatt ttgcccaccg gcaacaaaat atcggatatc agggatttca      3780
     aacgtccaag ggatacctca gaggtccgca gctttttagg gatgctcacg tttattagtc      3840
     cgtttatcgt gaacttttcg cacagaacca aaccgttacg cgatctgctg aagtcaaaca      3900
     cgaagttcgt atggaatgat gctcaccagc gggcgttcga ggaccttaaa agcgcagcag      3960
     aaaatgattt gattaagcga ggttattttg acgaaaagga caaaaccatt ctctataccg      4020
     atgcatcgcc ttggggtctt ggcgctgtcc ttgttcaagc ggataaggat tctggaaata      4080
     gtcgaataat cgcatgcgct tccaagagct taacgagcgc agagtgtcga tatcctcagc      4140
     ttcatcgtga agcactgggc atcgtgtggg caatggaacg gtttgcctac tacctcctag      4200
     gtcggcattt tgtcctgcgt tcagacagtg aggctttgat gttcatgctg aaaggaaagg      4260
     accggaaaga tgttggaaag agaatcatgt ctagagcaga aggctggttg cttcggacag      4320
     atcatttttg cttcgatttt gaacatgtgg caggtagcag taatatagcc gatgctgctt      4380
     caagaatcgg tattttgcgg aatgatccac agtttggggc agaacaagag tcacatgaat      4440
     tgtgttttgt cgcggcgaat cccggagcta ttagtgaaca aatgttggcg ttaactaaca      4500
     aggaagttca agatgaatcg ctgaaggacg ttgagctgca aatggtgtca tcttaccttg      4560
     gaaaacatgg aaagtggcct gctgagattg tgaagtatga accatttcaa ggaaatttgt      4620
     atactcacgg aggcgttctg atgaaagacg aaaaaatggt gctgcctgcg aaactacgag      4680
     gaagggcact gcgtgttgcc catcggagtc atccgggtat gtccacgatg aaaaacattt      4740
     tgcgacaggg tttatggtgg ccgggcatgg atcgggagat cgaaaacttc gtgaagagct      4800
     gtcatgagtg tcaaatggtc accgtatata gacatccacc accaatcact atgacagagc      4860
     taccaaacaa tgtctgggac tacgtttcaa tggatttctc gtcggcatcc gagttgcata      4920
     attggaaggc attgatcctt acggacaatt attcgcgttt cttggttgcc atcccaatgg      4980
     agaaaactga tacggacgct gttaaacggg ctttgaagaa agttttcaat acatactaca      5040
     cacccaaaac catgaaagca gacaatggtc cgcccttcaa tagctttgaa ctcaaagtct      5100
     ggctgaagga agcatgggga atcaaactga tacacagcac gccgctaaat cctactgaga      5160
     atgggttggt cgaacgaagc atgcagggca tcaataaaat cacggcaatt gccaagctcg      5220
     gtaaacagaa ctggaaggat gcactagctg attacgtcgc cgcttacaat tcctggcctc      5280
     atcatgtaac gaaaattcca ccagccgaat tgatgtttgg cagagccgta agaagtctac      5340
     taccgaattt gcgtacagat aacatcaata cagaggatgg cgaattacgc gatcgcgacc      5400
     aaaccgccaa gttcatccgt aatacccgag aagatacacg tcgccacgct ctagcctctc      5460
     agattacggt aggggatacc gtattggtct cacagatgaa aaaggataaa gcggacgtac      5520
     catacaagag cacactgcat aaagtcatac aattgactgg aacgggacga gcaacagtca      5580
     tggatatggc gacgcacaaa acgtttgatc gtagtgttaa atgtttaaaa aagtttgttg      5640
     aacaggcagt tgaagatacc caggaagcat cattgtcgtc gccggaggag gaggtggaag      5700
     tcagtacgca acatcatgcc aatccgattt tggcctccca gtcaacatcc gcagagagat      5760
     cagcacagca agacactgta aggaccagag aggaacctcg tgcttcatct aaagaagatg      5820
     atctccaaag acggccgcat cctcggacaa tacggaagcc gaaacgatac atcgatgcag      5880
     tgatgttcga agacgatgac atttgaggcc gacatttcaa tttttatatc gtatcaaata      5940
     tctatgttgt aaggggagga                                                  5960
//
ID   Gypsy-431_AA-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-431_;
KW   Gypsy-431_AA-I; Gypsy-431_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-120
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-120
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2066-2066 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 120 BP; 48 A; 12 C; 28 G; 32 T; 0 other;
     tgtgggatct agattgactg agttagattt agtgtggatt gaataataaa caagagagaa        60
     gtgatgatct gtaagtgtta aacatagata ataaatccga gaaaatacca ggacatcaca       120
//
ID   Gypsy-432_AA-I repbase;    DNA;    INV; 4926 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-432_;
KW   Gypsy-432_AA-I; Gypsy-432_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4926
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4926
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2050-2050 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4926 BP; 1661 A; 812 C; 1090 G; 1363 T; 0 other;
     aatttggggg ctcgtccggg aagtgtcgga atcgcgattg tgtcaaggga cacgtaaagt        60
     gctgaagttt ttgaagaaat agtgtacata gttagatata aaccattagt gattagtttg       120
     agttaagaca ttgaatttga aatctagtga ttaggcaaaa cattaattga attcgaacta       180
     aatcataagt gaaataagtg aattatttag tgcttttctt catcgaaagc attgccaaag       240
     cgcgcgaagg tgcgtttttt tttctttctc gaagaacagt ttcgaagcgc gccaatcagt       300
     gttaaacagc ctacctctcg agcggcggcg ccaaaacatt gaaagtgtga ccggtcaaag       360
     gccaccgaac gaggtaaaaa cagactgtga actattgtgc tcgcaaattt gcgaatcttt       420
     ctaatggcga acctaccacc gtacgggtac ggagctcctc catcccctcg ccaatttctt       480
     caacctcctc cctttattcc acctaatcaa acattgcctc cacctccccc tccacctgtg       540
     gtgaactatg gtctaccacc acgtgatccg aacaataacc gttttgctca aatgatcaat       600
     caactgaact tttcgaatat gagcgtagtg aatttaacag aacaaatgac tgctatgcaa       660
     agtgtgatcg acagtttaag aatggaaaac tcgaggctca ccagtgcgtt agaagaaaga       720
     cgcaccaaca atacgcctct gcgaagttgt agtacgccta atggcggtat tttgtaccca       780
     gaatttgaaa taaatagaag tgaatatcat gaagaaattg agctgcaaag aaatgtgaat       840
     agtgctagca atgtccctgt cggcaatggt cgagttgaag aagatgatga gcagcgaaga       900
     aatttgaatt gtgttaataa taacactatc ggcaatggtc gagatgaagg aaatgttgca       960
     agggcaatga gatgtgataa cagcagcaac tacgctgggg ttagtgtgtc atgtgaaatg      1020
     atgaatgata ttcctactac gagaaattct aatgtgccgg ataggtccga cggtggtgcg      1080
     caaaacaacg ccaatacttg ggccgtgcga tgtggtacca tgcgtgatga ttgttacgat      1140
     ggcttcaatc agcgtctgac ggtaagtgaa attgaatcag ctttttccga attttctggt      1200
     acagatctgt accctgtgca caaatggatt actgactttg aagagatgtc agagacgatt      1260
     ggtttatccg acatgcgtaa atttgtagtg gcgaagcgta agctgattgg cttggcgaaa      1320
     atgtcgctta atagcgctca ccacattact aattggaggg cactcagaga ttttttaatt      1380
     gctgagtttg aacacagaga gaatagtgct ctggttcatg agcggctaag ggcacgcaag      1440
     aggaatttgg gagaaaacgt tctcgaatac tttttggtta tgcgagaaat cggagcaaaa      1500
     gcaaatgtag actcagaatc gattatcact cacactatta atggcatcaa tgataatggc      1560
     cctgataaga tgttgcttta tggagcaaaa tctgttagcg agttcagaga gaaactacgt      1620
     gtatatcagg taataaaaga taataagttt actagggaga gtcgaatgcc aactgcaaat      1680
     acggagaaga gatacggtta ttcccgtttc gacagtggtt atcaatcgaa atcgcctaat      1740
     gggtataata atataccaaa gagtgcagca tgttatagct gtggaaaggt cggtcattta      1800
     gccagagaat gtcccaaaag atttggtgat aaaaatgtca atgtgtgcaa atcttcaatg      1860
     gtttcaaagg gaacttatat gtcagtttta ttagaaaatt tacctgtcga agcatttttt      1920
     gattctggtg ccgatgtgtc tttgttgcga gaagattggg ctgataaatt gaatttgata      1980
     gttgatgaac gcgagaaaaa aaggttaata acgcttaatg gcactatttg gactcttggc      2040
     tccacacggg tagatgtaca aattgaacat acttctctcc gtatggtttt tgatgtcctc      2100
     tcttcaaaag atatgcctca gagcgtgata attggaagaa atttattgat ctacggagac      2160
     gttagcgtaa ctgctgatgg agctaaattt atgcctaagg aagagaattt cgcgatgagg      2220
     atcacaacag atgaggtaga agatgatccg ttggatcaca ttaaaaacat tgagatacga      2280
     gaagatgtta gaaatttgat tgaaaattac acaccacgac aaaacgcaga aacaagagtt      2340
     aagttgaaaa ttattttgaa aaatgattct cctatagagc aattgccacg tagactagct      2400
     cctttagaga agcaaatagt agataaacag gtagctgaat ggctagaaga gggaattatt      2460
     agaccgagca cttcggaata cagcagccct attgttttag cgcataaaaa agatgggact      2520
     aggcgattgt gtgttgatta taggaaacta aataaattga ttgtgcgtga tcattttccg      2580
     ataccattga tagaggatat tattgatgaa cttcattctg cgagaatttt ttcaacatta      2640
     gatcttgaaa atggattttt tcacgtgcca gtagatgaaa cgagtataaa atttactgct      2700
     tttgtaactc catcggggca atatgagttc ctcagaactc cgttcgggtt aagtatttca      2760
     ccaactgtgt ttcaacgttt tattaatgat attttccgag aacttataga gaaaaaaatt      2820
     gttatcgttt acattgatga tttactaatc cctgcaaagg atgaaaaaga ggctttagag      2880
     agactgaaaa tggttctaga aatagcagag aagcacggtt tgaaaatcaa atggaagaaa      2940
     tgtcaactac taaagagaaa aattgagcat ttagggcatg aaattgataa cggtgtcatt      3000
     cgtccaacgc cggataaaat agtagcggtt actaattttc cagaacccag tagtttcaag      3060
     gaggtgcaac agtttttggg gctgaccggc tattttagaa aatttgtaga agggtattct      3120
     attattgcta agcctctcac agacttatta cgaaaagaaa ctgtatttgt atttggcccc      3180
     agtgaaagag aagccgtggt aaagctaaaa gaagcgttat gtggtaagcc tgcattgaaa      3240
     ctgtatagtc caagtgctct aacagaattg cacacagatg catctaaaat cggatacgga      3300
     gcgatcttgc tgcagaaatc tgctaacgat agtagttttc atccaattta ttactacagt      3360
     aagaaaacct cctcagctga atcaaattac cccagttatg aattggaagt tcttgcaata      3420
     gtgtctgcat tgaaaaaatt tcgcgtttat ttattaggaa ttccattcac aattgccacg      3480
     gattgtgctg cattcaaaat gacgatggaa aaaagagata tttcgcctag aattgcaggg      3540
     tgggctcttt tgttagaaga atacgaatac agattggaac atcggccagg agaacgtatg      3600
     aaacatgttg atgcactaag tcggaaccca gttgtacttc tactacagag taatgttata      3660
     gaacaaataa aagtttgcca aaggaaagat gaaaagctcg ctgcaataat tcaagcttta      3720
     ggagttggaa attacgatga ttattttttg gatcatggag ttctgtataa aaattacgca      3780
     gggggcaagc ttttagtcat accgaaatca atgcataatt ctgttatccg tcaaattcat      3840
     gagcaagggc attttgcatc aaaaaagatg agcgagctca ttatgcgaga atactggatt      3900
     gatgatttat cagctaaact ggataggttt actcaaagtt gtgtgtcctg tatcttagct      3960
     agtcgtaaag caggaaaaaa ggaaggatta ttgtatccca ttcccaaaga cgaaattcca      4020
     cttacaacat atcatattga tcacttagga cctttaacag catcaagcaa gcaatatcgc      4080
     tatattttta cggtaatgga ttcttttagc aaatttgtgt ggatttaccc agtaaaatca      4140
     actacagcag atgaagtcat aaagaaactt gatttacaaa agagtgtgtt tggtagtcca      4200
     aaaagaatta tatcagatag aggttcggct tttacatcga cagcttttga cttgtattgt      4260
     gaatccgaag ggattgaaca tttacttata acaactggag taccgcgtgg caacggccaa      4320
     gtagaaagaa tccatggtgt gatagttcca gcgttggcaa aattggccat tgataatccg      4380
     gaatcgtggt acaaatacgt tacagattta caaagatttt tgaataatac actgcaaaga      4440
     agtattggaa ggactccttt tgaaatatta tttggcgcaa aaatgagaac acgtgaggat      4500
     gttaaattag cagaaactat agaacaagaa tggataaaac ttttcgaaga atcaagagac      4560
     aaaattagag aagatgcaag acaaagtata caacaaacac aagagaaaat gaaaaaacaa      4620
     tttgataaac acagaaaaaa tgcaaacgaa tacgatgtag gagatttagt agcaatcaat      4680
     cgaactcaat ttggaacaca tttgaaaatc gcaaagaagt tcttaggacc ttaccgtgta      4740
     attaacaaga agagaaatga tcgttatgat gtggaaaaag taggcaatca cgaagggcca      4800
     aatcgaacat ctacatgtgc tgaatttatg aaaagattta ttcctctaga agaagatagc      4860
     gaaaatgatg aagaagtgca aaagtaatta cgtcattcgg gtcaaatgac ggtcaggatg      4920
     gccgat                                                                 4926
//
ID   Gypsy-432_AA-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 25.07, Created)
DT   24-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-432_;
KW   Gypsy-432_AA-I; Gypsy-432_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-255
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2067-2067 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 255 BP; 87 A; 47 C; 50 G; 71 T; 0 other;
     tgttaggatt ataagatata ttttgagaac caattacaaa ccagctcatt tgccttctcc        60
     aatttctacc tcgcggctat aaaaagccac tcaagccaat aggcaattta gttcttatat       120
     tggagaaggc aaaggaacgg tccttatgct agtgaataag ctaacggtgt gaataaacca       180
     gtgaaaagtt atacgcggtg ttttaaagtg cgatccgaaa gacttccaaa agtacgttgg       240
     taaagttatc caaca                                                        255
//
ID   Gypsy-433_AA-I repbase;    DNA;    INV; 4593 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-433_;
KW   Gypsy-433_AA-I; Gypsy-433_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4593
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4593
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4593 BP; 1398 A; 872 C; 1032 G; 1291 T; 0 other;
     gttggcgacg aatcgggatt aagttgtacg tgaatcgatt aatcggaaaa tcattgcgaa        60
     actgcgtatt aagttgcagt gaggaaacga tttgtgccaa atcggatgag ctttggagag       120
     ggcttcgttg gctgctgcga aaaagttgat ttattttcct ggttgtggtg ctatgcgctg       180
     gggccaacac ctggctactt tggatgagag gattgtgcga tgtgctaccg gtctgctgct       240
     aagttattgc tgcctgttgc tgttgttgtg ctgctgctgc tgtttagtca agatgacgga       300
     tccagtcaac ctaccagctg ctgctgctgg tactgatgct gctgctgcta taactggtgc       360
     tgctgctgct ttcccaccga tgtttacggt tgagccgttc gaccgaaata agtccaaatg       420
     gtcacggtgg gtgaaacgat ttgaaggagc gctcaacatt tttgcagtac ctcctgccaa       480
     ccgaaaggaa atgattctct attatatggg agccgaaacc tacaacctgt tatgtgatca       540
     tcttgctcca gcagaaccgg aaaacaaaac gtatcaagag attgtgactg cgctggagaa       600
     gttttttgat ccggaacctt tggaaatggt cgaactctgg aaatttcgat cgcgggtgca       660
     gaaagaaggt gaatcggtaa tggatttcgt aacggctctt caaagggaat cgaaatactg       720
     tcattttgga gattatctgg agaaagctct acgtaatcaa cttgtatttg gtttacgtaa       780
     tcagcgagtc aagacaaggt tgatcgaaga gaaggagctt actttcgaga aagcaaagga       840
     aatagctgtg tctatggaag catctggaga aggcgtcgag gtgctcaacc ggaaagtcca       900
     tgagttgaat ctagtggata aattttgcaa ccgggatcaa cgaccgactt cgaaggaccg       960
     acggatgact acaagagaat caggaactgc gtctaaggta actaacacta ctactaacaa      1020
     gtgcttcaga tgtggaagtg agacacattt ggcgaacaga tgcgttcaca agaacaccgt      1080
     ttgcaacaat tgtaaaaaga aagggcatct gcaacgtgta tgtctcagtt ccacatctga      1140
     cgatcattat gataagcgga ataagcagaa gaaacaacac acaaaccttc ttgaagatgg      1200
     ttctgataca agttcacaga ttgatgaacc gatatatttg cgtttttgat gtatgcgaaa      1260
     taaacgacga taaacaatat tccaaaattt ttcttaaact caaaactggg aataccatta      1320
     taaagtttga ggtcgatagt ggatcgccag tttccttaat gagtattgca gacaagaaca      1380
     aatatttgaa aaatatggca ttacagaaaa caaatctcga gttgcgaagc tattgcggaa      1440
     atcatataaa agttcttgga gttcttcacg ttaaggtgcg actaaataaa cagcttaatg      1500
     atttgcgtct gtttgtggtt gaaggaaata ggcatccatt gcttggccgt gagtggatgc      1560
     gggctctaaa gctaaactgg aatgagatta tgggtcataa taatttcgtt gttagtaaaa      1620
     taagttctcg tacaaccctg ccgaacctcg tgaatgactt gataagaaaa tttcctactg      1680
     tttttgatga atcggtagga aaaatggaaa atgtacaagc atctcttaca ctgaaggcca      1740
     atagtaagcc tgtatttctt aaggctcgcg cattgccttt ttcgattaag gacgttgtag      1800
     agaaggaaat tgaatgtttg gtgcagaatg gtgttttggt taaggtaaat cacagtgaat      1860
     gggctacacc cgtcgtacct gtaatgaaat cacaaaaccg ggtgagactt tgtggggact      1920
     ataaattaac cgtcaacaaa aatcttctaa ttgatgaaca tcccctaccg acaatcgacg      1980
     aactatttgc aaacatggct gggggaatca aattttctaa aattgattta tctcaagcgt      2040
     atctacagat gacagtgcga accgaagacc aaccaatatt aaccttaaac actcatctcg      2100
     gtttatttca acctactcgc ttgatgtatg gagtggcatc ggcaccggct attttccaga      2160
     gagaaatttc tcagatttta caaggtattc caggggtgtc cgtgttcttg gatgatgtaa      2220
     aaataaccgg tccagatgat gaaacgcatt tggccaggtt gtctgaagtt ctgagacgat      2280
     tccaaaagta caacatgcgt atcaatcttg caaaatgtga tttttttgct gatagcattg      2340
     aatactgtgg ctatgttatt gatagccaag gtattcacaa gattaaacaa aaagttgctg      2400
     caattcaaga gatgccacca ccgaaaaata aggaacaggt cagggcgttt atgggtcttg      2460
     ttaattatta tggtcgtttt atgccaggtt taagttcgaa gatgtatcca atcaacaatc      2520
     tcctaaaaga taatgcaccg tttgtgtggg atgtagcatg tgagaatgct ttcaaatggg      2580
     ttaagcatga gatgcaatct gagcgagttt tggttcacta tgacatgaat ctcccattag      2640
     tattggcaac tgacgcttct ccgtatggag ttggtgccgt tttaagccac atctacccgg      2700
     acggtagtga acgccctatc cagtatgcat cacagacact aaactcaact caacagaact      2760
     atactcaagt ggataaggag gcctatgcaa ttgtctttgg agttaaaaaa ttccaccaat      2820
     atctttttgg taggaaattc attctaatca ctgataataa gcctgttgct caaattttct      2880
     cccccgataa gggattgcca acactgtcag cgatgagaat gcaacattac gctgtatttc      2940
     ttgagagttt tgatttcgaa attagatacc ggaattctaa acttcatgcg aatgcagacg      3000
     ggatatctcg cctaccgatt tcaaattctt ttagtaaatc gtatcttgag ttagctgatg      3060
     ttttagaaat tcagcagata gaaacgctgc ctgtttctgt agaagaactt gctcaacaca      3120
     cagcaaagga cttgacggta cgtaacctga ttcaggcttt acaaaacggc agatttgtcg      3180
     agggtaatga tcgtttcggt attaatcaaa acgagttttc agttcaaaag ggttgtttaa      3240
     tgaggggaat ccgcgtttac ataccatcca cgcttcgtcg tagggtcctc gatgaattac      3300
     atgcgggtca ttttggaatc tcacgtatga aatcgcttgc gagatcatat tgttggtggt      3360
     gtaatattga caatgatatt gctggtttag ctcaaaactg tattgattgc gcacgtacaa      3420
     gaccagatcc aattaaagca agcattcata catgggagag accagcagaa ccatttcaac      3480
     gaatccatgt ggattttgca ggtcctttta tgggacaata ttttctcata atagttgatg      3540
     cttatagtaa gtggcctgaa atcaaagtta ttccagacat gacaactgaa acaacaatac      3600
     aaagattgcg agaatgtttt gctgcttttg tgattccttc agttatagta actgatcggg      3660
     gaacccaatt tacatctgat caatttaagt cgtttatgaa aaacaatggt attacacata      3720
     agatgggtgc tccatatcac cctgccacga atggacaggc cgaaagatat gttcaaacaa      3780
     tcaaagacaa acttaaagtc tgaagtaaat atggctctgc ttgatattct ttcggcttat      3840
     aggcgcactg tccatccatc aacagggaag agcccgtcaa tgctcatgtt tggcagacag      3900
     ttgaaaaccc gtattgatct gatgatacct aatgttgatc agaacaaaca ttccgtggag      3960
     gaaaagtgtg tacgctcttt cgaggagaat gatagggttg cagcgagaga ttttatggca      4020
     ggctctgaaa agtggaagtt cggtattgtc gctgaaaaag taggtaaact acactatttg      4080
     gttaggcttg acgacggtag actatggaaa cgccatattg accagttaag atcaagaccc      4140
     atagctcaaa gcagtgttgt tgatcctctc gattctctgc tagatcacat cattcgccac      4200
     cgatatcatg aatcgcagga ccaagtttca tcggacagtg tagttgatgg ttcactgaga      4260
     agtgtaccac ctgctcaaac ggaccaatcg attagcttga ataattcaac cacagacatg      4320
     acttcaaacc gcaactccgt tacccctaac tgcaatactc attaagatgc tggaataagt      4380
     acagaaaatg aaagtgttat tagaagatca agcagaatta ggaagcctca gtcaaggctt      4440
     gatttgtaaa gcaatctaac accactaaca ttaacaaccc attcctacgt cctatcctaa      4500
     acaaatgtac ccctaacccc gagtcggcca cgggtaatta tggtcttcca attactaacg      4560
     tttcttgaac aatttgtgtg ggaggaaaag atg                                   4593
//
ID   Gypsy-433_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-433_;
KW   Gypsy-433_AA-I; Gypsy-433_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-186
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-186
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2068-2068 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 186 BP; 49 A; 37 C; 34 G; 65 T; 1 other;
     tgttataaag ttcgcattag aatgtgttca ctgtaagtgt caaccactct agagttcact        60
     catgtcattg atcatttcct ttgtacctct tttgtgtgga ataaagattc attcgttkgt       120
     aagtcagcaa gagtaaagca cgttgtttta cttcgcggcg attccgccat tcccgaaatt       180
     ataaca                                                                  186
//
ID   Gypsy-434_AA-I repbase;    DNA;    INV; 6487 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-434_;
KW   Gypsy-434_AA-I; Gypsy-434_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6487
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6487
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6487 BP; 2564 A; 1178 C; 998 G; 1747 T; 0 other;
     tggcgaccgt tttgagcgag cgaacaatgc tcggaaaaag aagtccgcga tcacagtgat        60
     acagtgaaaa atgtgaagtg aaacattttg aaaattgtgg tggaaaactg gatcgaccca       120
     gaattcaaaa cgcacgaaat attccagaag ttaattaagg tgctgaattc taaaacaaaa       180
     gtgactaggc atgtgtgtta caataatcta accaattacg atggggtggt ttagcagcga       240
     tgaaattatc actgccacca ccagcagcag cagcaccacc gaggacaaat tcgtggcagg       300
     tgcagtgtgc attatggcaa ttttacttgt gcttgttgtg attggcaagc tgatttttta       360
     attctatgag cagctgataa gaagaacagc tcaaaatgaa gctcgattgc acacgctatc       420
     gcaatctaac gtgtagataa gtgctcagaa ataaacaaga aaaaaaggag accaatgaac       480
     agcaatttgt ggaacattca acctgattac taagtgcaac gctagtggct aatcaaggtc       540
     tggccggggc gcaacaacga gaggaggaaa cacctatcaa catcacctat cgacatcacc       600
     tatcagcatc acctatcgac atcacctatc aacatcacct agcaacatca tttatcaaca       660
     tcacctatca acatcaacat cacgaagtga tcaaagctaa gtaacaaaac cttttatcac       720
     aaataatgta aatttactac ttctatattt aaattatatt tattaaataa gtacctattg       780
     tacatgcatc accatctata aaaaaaaaaa tggatgacaa atgggataat ttttttgaat       840
     tcttgaaaga cattagcaaa ggtaaaggaa cgggaatgtt ttcaacagaa tatacaacaa       900
     caagtaaaga tcccaaaaca tgggaagaaa tggtacaaag attaaatgat ttaccaggag       960
     atgaaccaac tacctggcaa ccaatcctaa aactcgacaa aaacgattca caaaataata      1020
     agtgaactgt cgaaatagaa gttacagcta ttgccaaatg caagcatatt gggaattgga      1080
     aagattattt caatatttca aaaaagcaat aaataccacc ttatcttacg aacttttaag      1140
     gaaaaaggaa aaattaaatc aaaatctaat attgaaaatt gaaacatttt tacaaacaga      1200
     atataatgaa ttaattgacg acgactttca tacaatcgta aagaattcac gacattggaa      1260
     ttatgaaatt aaaagaataa ttaagcataa aatcgaaata attaaaatcc aagccgctaa      1320
     aaccgaaact ggttcacgtc ttcctaagaa aaattttgta aatacgacaa aaatggctga      1380
     ttttgacatc aagcgagcaa catccctcgt acccatgtac gatgggtcat ccgatcaatt      1440
     agaatccttt gtcgatgctt taaatttatt agcggagata acaccggcag atcaaacagc      1500
     aactgctgtt agatacgtaa aaacaagatt gacaaaaagg gcaagattgg gactttctaa      1560
     caatctagcc acaattcaag acatcataaa tgacttgaat gcacgatgca aaagtcaaga      1620
     aaaaccggaa tcgttgatag ctaaactaaa acagattaaa aaatcaacta caaccgaatt      1680
     ttgtgacgaa attgaaaatt taactttgaa gctaaaaagt ctttacatgg aaaagcaaat      1740
     tccagaggat gtcgcaaatt caatggcaac caaagtgggg cttgaatccc tcataaacgg      1800
     gatcccctcc agcgaaacaa aaattattct gaaggcaggc aacttcacga atatacaaga      1860
     agctattctg aaggtgaatg aaaatacaag ttcacaaaat gctcaagtac tgttcaccaa      1920
     cacaacgaaa cagtataaca agcaatcgtt ccgaaacaac ccgcgattca attcacaaaa      1980
     taattatcaa cgcagaaatt tcaattctca caacgggaga ggtcgacgcc ttttcaacaa      2040
     tgattcaagg aattttccaa acaacaactt tcgtcctcaa cgtcaacgct ttaacggcta      2100
     tcgacagcta agcggaaacc ccgcgcaagc ggcaaatcat aacaattcac attttagaag      2160
     agtgtacacg ggagcagcga cacagttccc tacagaacca catattcact cacccatcga      2220
     cgtacgtatg cctccgcata cggtagaaat gccaagtcaa gcacatttga ctggtgcatt      2280
     aaatacaaat ttcaatcaac aaccaccacg taacacccaa cagatgacac acaatcctta      2340
     ttttttaggt caaaacccga acctatctca atttatgcaa tgaacctagg tgcaacaaac      2400
     ttcatcaagt tacatgtgca tatggctaat tccgtgtgtt cattcataat tgactcaggt      2460
     tcggatattt cagttttcaa gaaagacaaa gtatcttatt tacagcatat aaacccgacg      2520
     aaacgattca aggtaactgg cattacagat ggtgtaactg aaaccatcgc cgaaactgag      2580
     actattttac agtttgagaa tggtcttcaa cttaaacacc aatttcaact cgtaaatatt      2640
     ctatttccga ttccgaccga cggcatcatc ggccgtgatt ttttttgtaa atatagatgc      2700
     actatagatt acgatcattg gctattgaaa tttttactca ataatcagtt agtagaaata      2760
     cccatagaag ataatttaaa tgaaggattt atcttaccca gtagatgtga aattataaga      2820
     aatatttcta cacttaatat aaatgaggat atggttgtcc aatcagaaga aatccaacct      2880
     ggaatattct gtggaaacac tataatttcc tcaaataacc cctgtataaa atttgtaaat      2940
     accacaaacc aaccagtgta cataaacagt ttcaaaccaa cgctagaacc actacgcaat      3000
     tatcacatta tttttaaaaa taaaatcgat tgtagcagta aagatcgatt taataagata      3060
     attaatgaga tagatatgtc aaatacacca aattatttta agaatgattt tttcaaactt      3120
     attcaatcgt atgcagatgt attctgttta ccaaatgaag cattatcaac aaacaacttc      3180
     tattctcaaa acataaactt aagtgataac gtccctgttt atatccctaa ctataagaca      3240
     atacactcac agggagatga aattcaaaag caaatatcta aaatgcttaa agaaaatgtt      3300
     atcgaaccat cggtatctcc ttataacagt ccaattctat tagttccgaa aaaatcagat      3360
     aatgatacca agaaatggcg tttagttgtc gactttcgac aattaaataa gaaaatttta      3420
     gcagacaaat tcccgctacc aagaattgat accattttaa atcaacttgg aagagccaaa      3480
     ttcttcagca cactagactt aatgtcagga ttccaccaga taccactgga tgaggaatca      3540
     agaaaattca cctctttttc tacgcaatca ggacactatc aatttacaag gttaccattc      3600
     ggactaaata ttagcccgaa tagtttccaa agaatgatgt ccattgcaat ggcaggttta      3660
     acacctgaaa tggcatttat atatatagat gatataattg tggtaggatg ttcgatacct      3720
     caccacttgt cgaatttatc tactgtgttt gaaagattac gaaagtacaa tttaaaatta      3780
     aatgcgaata aatgtaaatt tttcagtacc gaagtaacat acttaggtca taaaataact      3840
     gatcaaggca ttttgccaga cagctcgaaa tataatacaa tattgaatta tccaatacca      3900
     aaaaatattg atgatataag acgatttgtt gcattttgca actattatcg caagtttgtg      3960
     ccaaattttg caatattggc ataccctttg aatcaactac taaagaaaaa tgcaatattt      4020
     acttggtcag atcagtgcca aaaggctttt gaaacgttaa gacaacattt aatgtctcca      4080
     acaatattac aatttccaga ttttacaaag acttttattc tcaccacgga tgcatccgac      4140
     gttggatgtg gagcagtatt atcacaaaat aagaatggct ttgatcttcc aatagctttc      4200
     gcgagtaaaa ctttcaccaa aggcgagaaa aataaagctg ttattttgaa agagttaact      4260
     gctattcatt gggcaattaa ccattttgag gcttacctgt acggaagaac atttctagta      4320
     aaaacagatc atcgacctct agtttttctt ttcagaatga aagatccgac atcgaaatta      4380
     actagaatga ggcttgattt aggtgaatat gattttaata tcgaatatat aaaaggtaaa      4440
     gcaaacgtag gagcagatgc tttatcacgt atagtaacaa catcagaaga attaagacaa      4500
     ttaagcgtgc ttatagttaa cacgagatct atgacacgta aacgacatca aaaatgtatt      4560
     caaaatgaaa ctactatcga gattgatcac cccgctatgt acaacatcga gaatcaaaca      4620
     gaaacgagat atctaccaaa acttactata aatatagata ctaatattat taagtttata      4680
     atattctatg gtttgaacaa gaacagaccc gtatatgaaa ttaaaatgca aattaatgga      4740
     aatcaaacac tagagtttgc tttttctaag ctcgataatg acatgaaaat gatgaatata      4800
     aataaaatag cgctttcaaa taatgacgaa atatttcaat tgatgccggc cggcctatta      4860
     aagcaattga gtaataaaat acttaaaaat ttaaaaatcg ttatatataa accagcaaag      4920
     ttcattagtg atccttgcaa aatacaagaa attttaaaag ttaaccatga aacaccactt      4980
     ggaggacata ttggacagca tcgactgtac agaaaacttc gagaatgtta tacatggaaa      5040
     aacatgaaaa agacaattgc gcaattcatt aaggcctgtg aattgtgtaa aataaataaa      5100
     ataacgaaac atacacgaga aaaattaacc attacgagta ctccattaaa accttttgaa      5160
     attgtatctg ttgatacggt aggaccactt ccaaaatcca accgaaataa cagatatgct      5220
     attaccatac aatgcgaatt aacaaaatat ataacactta ttccgatacc gactaaagaa      5280
     gcaaatataa ttgcaaaagt tttagttgaa aattttatac ttatctacgg aacattctta      5340
     gaattaaaat cagaccaagg aacagagtat aagaatgaaa tccttgaaca aatatgcaaa      5400
     ctaatacaaa taaaacaaac ttttgctaca gcatatcatc cacaaacgat gggttcactc      5460
     gaaaggaatc acagatgcct caatgagtat ctgagatcct ttgtcaacga acaccatgcg      5520
     aattgggatg attggcttca atattatgct tttaattata atacaacacc acacactgat      5580
     catgggtata ccccgtacga attagtgttt ggagttaaac ctattacacc taatttacca      5640
     tgtttacaaa caggaataat tgacccgata tataattatg aactatataa caaagaactt      5700
     aaatacaaac tacagaaatc acacgaacta gcaaaaatga aacttataga acacaaaatc      5760
     aaacgtaagg aatcaataga tatgactgcg aacccactga aaatcaaccc aggagacaat      5820
     gtttatttga aaatcgaaaa ccgacataaa ttagactcat tttataatgg tccatacaca      5880
     ataacaagaa tagatgaacc gaattgcgaa attattcaca aagtatcaaa acaaacattc      5940
     aaagttcata agaatagact catcaagtgc tagtaaaaca ataacaacaa cctttccgac      6000
     aaaatttgaa caaatctttt ctaattatcc aatatcatgc aacaatagat cagcaaatct      6060
     ttttttataa tcttgtatga ctcattcaat atttttatca aatttttcaa taactcaatc      6120
     acagttagac aatattttta ttaatcggac ataaccttaa ccaatattat acaaaaaaaa      6180
     aaacttataa aaaaaaaaaa gtaaaacaaa gcaaaatttg tacggaataa acaacattca      6240
     aaatttgtga caacagaatt agctaaaaca gagatctacc gagcctaaca cccataaaaa      6300
     agagaatgaa aatcaaaaaa ataataatca aatggggtag gtgaaaattc ttggtcttga      6360
     actaagaagt gctaaattcg gttaggatca acttaagaaa ttttttttta aactgtaaga      6420
     ggtccttgga gaatagttaa tgacgaatga tttctctacg ttacatcatt ctattaaagg      6480
     gggaaga                                                                6487
//
ID   Gypsy-434_AA-LTR repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-434_;
KW   Gypsy-434_AA-I; Gypsy-434_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-586
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-586
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2069-2069 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 586 BP; 199 A; 147 C; 62 G; 178 T; 0 other;
     tgtagcatat caaattagat aataaaaatc aaaatctctc tcttcaccca aaatgtaata        60
     attatcctaa aaaccataaa accttaaaaa ttcatgtctc acactttccc acacataaaa       120
     tcagagactt tcccagattc gtaaaaccct tgttttacga ttcaataatc gataccatat       180
     gtacagaaca cattgcatca atgtaaccac ttcaaaatat ttaatagtca tctttctccg       240
     taacacacta aaagtcgacg acccatgtca tcgacacttc attgcaattg ctcaaagttc       300
     tttcccacgc gatcgatcaa tgcccagcgt tattcgatct ctttcatgta caatcgcatt       360
     gacccgtcct acgccacatg cgacaaataa ttatgcaccc atacacttaa ccttctttac       420
     tttctatgct gattggttct caggaattta gtcaagcaag ctaactccaa gctcctccct       480
     caaccaaatt tgtaagactc gatgtaataa cctttttcag ttaataaatt cattctgatt       540
     tgaaccgtca accagagacg ttttaataat taccataatt accaaa                      586
//
ID   Gypsy-435_AA-I repbase;    DNA;    INV; 4466 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-435_;
KW   Gypsy-435_AA-I; Gypsy-435_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4466
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4466
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4466 BP; 1338 A; 931 C; 1088 G; 1109 T; 0 other;
     tggtgtcaga aatttcagtg attcaaccca cgttttagtg caaattcctc cgataataat        60
     tgtttggaag tttggctggt ccatgcggga catgctcttt ctcgcagcaa aatggcgtag       120
     ctcgtggtgt ggaagatcac atcagcttat ctgttgtagt gtgttttgac gcgctcatac       180
     gggcagaaag gcctgtttgt gtatagcggt gaagtgtgca aactaatacg tgaacatgga       240
     agaaataaga gcgctgctac agcagcaaaa tcagttgttc agtgcgatgg tagagaagat       300
     ggccgtcccc ggcgctcaag cagtgaatca aaacgaacat gctgcgcagc cggttccgca       360
     gccccctccg ctgtgtctcg agggagacat ggaacaaaat tttgattttt tttccacgca       420
     attgggagaa ttatgctagt gctctcggta tggatcgttg gccggatgcc gacaacccga       480
     aaaaagtggg atacctgttg tcggtcattg gttttgaggc attgaaaaaa tatttcaatt       540
     tccaactaac ggatgatcag aggcaatcac cagaggcagc attggctgct ataaaagtga       600
     aggttgtgcg ttcgcgaaac atgaatctcg acctcctcga acctccgaaa cggaatcaat       660
     tgacgagttt catacgcggt taaagatgtt ggcaaaaccc tgccagcttg gtgatttgga       720
     ggatcgtttt attacgtata agattgttac ctccaataag tggccgcact tgcggaagag       780
     gttgacaaca aacaacgaga ttactctcga aagagcggtg aatgattgtc gactagaaga       840
     agtgtccgca agaagtatgc tggaattggg tgctgaaggc accagtgaag tgatgaagat       900
     cgactcaaaa agtgaaagaa gagagaaaaa atgtaaattc tgcggaggac gtcacgtttt       960
     cgaaaagggt tcatgtccag ccctcggaca gaagtgcaga aaatgcaaag ctaagaacca      1020
     ctttgagaga atgtgcccga tgaagaaaac gaagaaaaac agaagagtga atgaagtgct      1080
     aaacgacagt gacagtggga gcagtgcatc agacatgagc agcgaatctg atgagtcaga      1140
     tgtggagcgt gaaattggaa aaatttacaa caatgcgtcg cgtggacgtc atgtgttggc      1200
     agatttgaag ttgaagattg aaggtcgttg gaaaaaagtt aaatgtgagt tagacactgg      1260
     ggccaacaca agcctggtag gctacagctg gctcaagaaa atgcttggaa tcagcaatcc      1320
     ggccctgtta ccttcgaagc tgaagcttca aagcttcggt ggtgggtcaa ttccggtttt      1380
     gggtgaaatt aagtttccgt gccaacacaa gaagaagaag tacaaactgg tgcttcaggt      1440
     ggtggatgtg gaccatcgtc ccttgctatc agcaaatgtg tgcagcattc ttggtttagt      1500
     gaaattttgt aatactgtat cgtacaaacc tgctgaaaca acccaacaat gtgacccctg      1560
     gaagattcac aaagttgaag cgtcacgcat tgtgcagcgt tatgagagtg tcttcgaagg      1620
     ttatggaaga atggagggtc aagtgacact ggaaattgat cccacagttc ccgctccaat      1680
     atcaacatcc aaggcgcatt ccgattgcgc tccgtgaaaa cctgaggaag gagttggacc      1740
     agctggaaaa ggatggcatt gttgtgaagg agccccacca caccgcttgg gtaagcaaca      1800
     tactgctagt gaaacgatcg tcttcaggtg agtctttccg catttgtctg gaccccatac      1860
     cattgaatag agctatcaaa cgaccgaatc tccagttcac cacgcttgaa gagatcttac      1920
     ctgagttagg caggacaaaa gtgttctcaa cagttgacgc acgcaagggt ttttggcaag      1980
     tagttctcga cgattctagc agtcttctta caacattctg gactccattc ggcagatacc      2040
     gctggaccag actgccgttt ggcatctcat cggcaccgga gattttccaa gcaaagatgc      2100
     gtgaagttat tgagggtttg gaaggagtag aatgtctcgc cgatgatctg ctgatttttg      2160
     gacgagggga cacattggat gaggcaatgt tagatcataa taggtgtctg gaaagattgt      2220
     tggctcgtct tcagcggtgt aatgtaaaat taaatcgttc caagctggtt ttgttccaat      2280
     catcggttaa gttctttggc catatcctgt ctgatcaggg tctccaagtg gatgaaacaa      2340
     aagtaacggc aattaagaac tatccttcac cgtccaatcg gaaagacttg cttcggttca      2400
     taggtatgat taactacctc agtcgttttc tacccaacct gagtacgaag ctccaagttc      2460
     ttcgtcgact ggtttcagac aaagttgaat gggtttgggg tcaggaggaa caagccgagt      2520
     tcgagaacat taagcaactc ttgacaaatg tcaaaactct taaatactat gacctcaaac      2580
     ggcctttgac gattgaatgc gacgcaagtt ccttcggtct aggtgttgcc gtttaccagg      2640
     aggacgggat cattggttat gcttctcgaa cgttgacgca aacagaaaaa aactatgcgc      2700
     aaattgagaa agagcttctc gcagttctct tcgcttgcca gaggtttgac cagatgataa      2760
     tcggtaatcc caaagtagtc atcaagacag atcacaaacc gcttattaac gttttcaaaa      2820
     agccgctcgt gaaagctcca agaaggcttc agcacatgct tttgaatttg caaaggtaca      2880
     acgtccagct tcaatttgtg accgggaaga ataatgtttt ggctgacgca atttctcgtg      2940
     caccagagtc acaggtttcc gactcctcaa agtatcgtaa tgagaacata tatcgaatat      3000
     ccggagaggt agaagacatt caacttcgag aattcctcag tgtatcagat gatcgaatca      3060
     accagattat tgaacacacc gccatcgacc aagtattgca aatcgttata agttacatca      3120
     ggcaaggttg gccagatagg gtagatagag tcccagctca agtgaagccg tacttcaaac      3180
     accgccatga actgtcgtcg caatctggat tagttttccg tggagacagg attgtgattc      3240
     cctcatcgct tcatcgtatc atgattgaaa agttacacac tactcactcc ggtatcgaat      3300
     ccaccctaag actagctaga gagaatatct tttggcctgg gatgaataga cagataaagg      3360
     ataacgtgca agaatgtacc atctgtgcta aattcggcgc ttctcagcca aacccaacca      3420
     tgaagactca cgctgcgcca atataccctt tccaactcgt ctctatggat gtatttttcc      3480
     aggagtaccg aggaaaacag agaaagttct tagtaactgt agatcattat tcagattatt      3540
     ttgagctcga tattttggat gatctaacac ctgcctcagt aataaaagcg tgcaagcgga      3600
     actttgcctg tcatggaact ccacagttgg tcataacaga caacgcaaca aacttcgtat      3660
     gcgaggaaat gaacgagttt gccaaagctt gggggttcag acattctacg tcagcaccat      3720
     accatcaaca aggaaacgga aaagcagagg ccacagtgaa gatagccaag cggttgataa      3780
     agaaggctaa ggaatccggc caggacttgt ggtttgtatt gcagcaatgg cgtaatatcc      3840
     ctaacaacat tggaagtagc ccggcatcca ggttgttctc ccgcagcatc cgttgtggaa      3900
     tacccattcc ggctactaat ttgatgcaac gcgttgtaga aaacgttcca gaatctatcg      3960
     ttaagaatcg acaaaggatc aaatattatt acgacagaca gtcaaaacaa ctgccagctc      4020
     tggagattgg atcaccagta tacgttcagt taaggccaga gtcttcaaaa atttggaccc      4080
     ctggtgttat tagctacaag tttagcgacc ggtcctatgt ggtagacgta gaaggaagca      4140
     attttcgtcg tgatgcagtg aatgtcaaag cccgtagtgt acccactgcg acttcagacc      4200
     ggatcaggca atcgtcgaac actgaaagcc ttgcagcaga acaacaggaa acaatacaac      4260
     taccgttggt gacaactacg gaagattcgg aacaagcatc tatcaggagt gaagcagttg      4320
     aaacttcgaa agcagttaca cccaacaggg taaccaattc aactgaaaca acaagacgtc      4380
     ccagaagaga agttcgattg ccggagaaac ttaaagatta tatagtgaat ttgaagtgat      4440
     ttttattttc tatgaaacgg ggaaga                                           4466
//
ID   Gypsy-435_AA-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-435_;
KW   Gypsy-435_AA-I; Gypsy-435_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-210
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-210
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2070-2070 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 210 BP; 63 A; 31 C; 43 G; 73 T; 0 other;
     tgttataata ttaattatat tgaagtgtat cacccctttg ataaataacc cagatttggg        60
     tactttgatt tgagcgtgca tcaagctttg ctgagtcagt gagttgtacg ccgcgaatat       120
     gaatggacgc aataaatgta atcgactgat aaagtgccgt gtttaatttc gtttattgaa       180
     gagttccctg gtttattaca aattagaaca                                        210
//
ID   Gypsy-436_AA-I repbase;    DNA;    INV; 6976 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-436_;
KW   Gypsy-436_AA-I; Gypsy-436_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6976
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6976
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6976 BP; 2160 A; 1663 C; 1664 G; 1489 T; 0 other;
     ttggcgccca actgaatatc ccacattgaa agcattacta ttaagttatt gcggcatttt        60
     gaaatttatg gatagttaag ctccctttaa cattgagcaa ttacggttgg tttggattaa       120
     ggtaattata agctacctaa aatggatttg acacatttga gtgatgaaga gattgactac       180
     gaactagcac ttcgtttcgt tgtcaacctt ggtcctttga cacatcgaaa caaggtttta       240
     aagttgaagg atctaataac caaagaagat gctcttcaaa ataccattta tcatagttca       300
     gagcacgtta tgagctcgac taccaacatt gaaacttgtc agaagagaat tggagaactg       360
     aaacagctcg ttgatgaagc gatccaaatg aaagacgctt ttgctacagc gcaattacgt       420
     tcgcgtctcc ttcactacag ccataggctg gacgcgatca accctctcgc gcctttcgcg       480
     agcaccaaag aaaccttgtg ctcgcttgtc aaagtgctca tagatgaagt ggacagtgct       540
     ctatcgcgat tcggtcagcg cggagatcgt agtgaaactg tggtgacaaa tctgttacct       600
     tcggggaata aacccaacga agaatgtagc aagcaaaccg acctagcatc aggacagaca       660
     ggcatagtaa acacggatgg ggcgtatgca cggttaggaa ttcctgcaaa tcccaccgaa       720
     caactcacca tcacctcgcc acccccattc gtaggacagg taaatacgca ggcccagcac       780
     accatcagac aggataatct tgactcagga acagaggcaa cacacagcag acatcaaatc       840
     aaccaaatca acaataatgg aatttctcct ttggaaaatc cctccggaaa tagtcccaat       900
     caggcgcagt tgcaacacga tggaagcttc agaggggacg gcgttccgca ttcatcagca       960
     tccaattcac cgctaggata cttcagtgga agagggatag cagtacaaag catactaaat      1020
     attcgctccg acgttgaggg acgaggaaga acgacacacg tcccgtcggg aagcgtcgat      1080
     gacagcttgc atgataacta caacgacctc acgtaccgaa atatcatcac aaacaatgca      1140
     agtctgtacg cagacctgtt ggatcgtctc gcgcgaagga taccaacaat gcaagtacag      1200
     ccaccgatgg atcgagcaga agatcgaaga atgacaaaag ccatccacaa ctggccgttc      1260
     aaatttcgag gagagaaaga caccacttcg ctaaacatct ttctcgatcg ggttgaaaca      1320
     ttcgcaagat ccgagggagt aagtgatgga acgttgttat cctccatcaa acatcttcta      1380
     caggaggacg cgttagattg gtattctcga gcgatgtcgc aacgattgct gtattcctgg      1440
     gacactttca agaaggaaat aaggagagag tatctaccga caggttacgc gcaaatactt      1500
     cgactagagg ccagcttccg ctaccagggg caaaatgagt cgttcgctaa atattttcgg      1560
     gacatcgcag cgcttttccg gtttatctca ccgccattaa cagaagaaga acagtttttc      1620
     atcgtcaaga aaaacatgaa tgcggattat gcggcgatag tgacagcagc tcgtcctgca      1680
     aatctgcagg aaatggtgga agtttgcacg agctatgatg agactagaat gctgctaaac      1740
     cggcaacgta gacttccagt cccacacaac gccttgcttg aaccaaattt cgccacccca      1800
     gtgagtcaag cgaaacctta tcaatcacag ccaccgaggt tccctagggt aaacgcagta      1860
     gaagcatgca acaggatcga agacccactc tcaacgcaac aaatgtcatt tcctgaagga      1920
     atgccgactc cggatgagga agaaggggaa tggcaagctc gaatggatca gctgttacaa      1980
     caagtgaacg tactgaaggg acagtttgac cgtaggctct ccaagcccag caaagggatc      2040
     tcaaacagtc aagagcgaac agggttacca cagcaagcag cagcttctca atctctatcg      2100
     ccaaaccata ctagtcatta tcaacaacgg tggcaaccgg ggcagcagca gagaacatgg      2160
     catcaggaca gaacggccga tcaacaaagc gagtcgatac aagcttcgca gcgtcagcaa      2220
     agtgtactac aaaatcaacc agcgaggcac ccagcggaac aagttctaga gcagcaacaa      2280
     ctaccgtggc atcaaacaca tcagcaatcg gcatggcaac aacatcagcc agcgatccaa      2340
     cagaatcctc cgtgcacatt tcaagccaag tacgcgcagc cggcaggaat tagcggtcgt      2400
     tctaacacaa catgctggaa ttgcgacgaa gagggtcatc gcttcatgga ctgtccgaag      2460
     ccacaagctg tgctattttg ctaccgctgt gggagaaagg gatactcact gcgtagctgt      2520
     ttcacgtgcc gcacggatgc gggaaaccaa caggcgggga atctactata gaggggacgg      2580
     attcttcgct tcaagcacca gaaccctcag aagaactaga cattcaacat ctggacacaa      2640
     tcatcattaa tcccggacag gacaacagac cccacgcagt catcagcgtt ctgggtcggg      2700
     agctaactgc attattggac agtggggcaa actgttcgtt attgggcggt aaatgcacga      2760
     agatcatcga agagttggct ctacggaaag aagtggtaaa aggcggtata aaaactgcgg      2820
     acgggacgag acacactatc aataattacg catggctacc tatatgatat aacaatcggc      2880
     atgaagcgct accggttttg ctagttcctt caataccaga ctgcgtaatc ttgggtatgg      2940
     acttctggaa caagttcggg gttaagcccg tatgctgcgc gatgcaagca acaacaaccg      3000
     atgaagaaga agatatcacc gaagagccaa tgaaggaact cacagccaat gaacgcaagc      3060
     gattagacca agtcgtagca caatttccta aagcaaacga tggtacactg ggcaggacaa      3120
     ccatctacga gcaccgaata gacgtaggaa acgcggtgcc gaaaaaacag aaatactacc      3180
     caatgtcaca atatgtgcta caagaagtaa acagggaagt agacaggatg atcgctctgg      3240
     acgtaattga agaagccgtg ttctcccctt ggaataaccc attagtagcc gtgaagaaga      3300
     aaacaggcca gtatcgagtt tgcctagacg ctcgacatct taactccgtc atggtcaatg      3360
     aaggctaccc gattccacaa atatcagcga tcatcggaaa ccttggtggt tgctcataca      3420
     tctctacaat tgacctgaag gacgctttct ggcagcttcc tcttcatcct tcatcaaggc      3480
     cgttaacagc cttcacagtg ccagccaggg ggcacttcca attcaaagtt gtcccttttg      3540
     gactatgcac ggctagccaa gcactcgcga gagttatgac gcatttgttt gccgatatgg      3600
     agccgtacgt gtttcactac ctcgacgaca tagtgatatg ttcacgaaca ttcgacgagc      3660
     atctgaagat attagacgaa gtcgcttgta gactaagagc tgcaaatcta acaatctcag      3720
     cagacaaatc gaaattctgc aggaaacaga tcaagtactt gggatatgtg ctaaacgaga      3780
     agggttggca agttgatgat gataagattg aatgtatcgt gaaattcccg gttccggtaa      3840
     atcgcaagga agtgcaacgg ttcatcggac tctgcaactg gtaccgacgt ttcatttcgg      3900
     atttcgcaag gatagcagcc ccgctgacgg aattaactag aacgaaaata aaattccgct      3960
     ggacaagcca ggcggaggaa gcgtttctca ggcttaagtc agtgttggtc tcagcaccgg      4020
     ttctaatcat gccagattac accacgccgt tcagcatttc ctgtgacgca agcgacgtgg      4080
     caatcggagc agtcctcaca caagaagtgg acggagagga acatccggta tgttacttct      4140
     cccagaagtt gtcgtcctca gagcggaagt actcggtgac cgagagagaa tgcttggcgg      4200
     tcattagagc gattgaaaaa tttcgcggct atatcgaggg tgttaaattc acggtttatt      4260
     gcgatcatgc ggcgctgagt tacctgaaat cgctgaaaaa ccctacggcg ctgatgagtc      4320
     ggtggttgct tcgcttgaac gcgtttgatt ttgaaatcaa gtaccgaaaa ggaacgatca      4380
     atgtggtgcc tgacgcactt tcgagaatcg ttagcgcaac aatattcagc acaagtgcta      4440
     caacagatgc atggtacaat gaaatgcgcg aacgagtgaa caagcagccg catagatttc      4500
     cagagttccg cgtactgaac aatgagttgt acaagaactg cagaagcacg gatgaaacag      4560
     gagcacttac acatagatgg aggaaggcag taccacagat gcagcgtaat gagatcatgc      4620
     aacgctttca cgattcacca gcagcagctc attttggagt ttacaagact ctgcagaaga      4680
     tcaagacaca cttctattgg ccaaaaatgc aacaggacat ctaccgttac gtgcgtagct      4740
     gcgaaacatg taaggccagc aaagcaccaa attcgacgct gatgccacag atgggagctg      4800
     ggaaacctgc caagcagcct tgggaactgg tatccatcga cttcgtgggt cccttcaccc      4860
     gctcgaaaca ggggaacaca gtcatgctcg ttatagtcga ttgggttacg aaatacgtaa      4920
     tcatccaccc aatgcgcact gcagactcgg tgaaaatggt ggagtttcta gagaaggaag      4980
     tattcctaaa gttttctttc ccgcgcatca tcctctcgga taatggcaag caattccagt      5040
     ccgtagtatt ccgttcaatg ctagctcgtc acaaaatcca gcacatgaaa acagcttact      5100
     actgccccat ggtgaacaac gcggagcgcg tcaaccgtgt cctggttaca ggtatccggt      5160
     cactcatcga cgatgatcat cgaaactggg atgagaatct accgtcgata gcggcagcta      5220
     taaacagcgc gatacacgag tccacggggg tgagccctca ctgtgcaaac tttggcagag      5280
     agctagtgct ctacacagac ctatatcaat tgcaagacat gaacacggaa gaagaggcaa      5340
     aaaaggcgca ggacaagcga ttatcgggaa ttcgaaggat ccaggagttc atcgttcagc      5400
     ggatcaaaga gagtcacgat aagtcaaaac agcggtatga tctgcgaaag cgatcggtat      5460
     cgtacaaaga aggagacgta atctggcggc gaaattttga actatcttca aaggcagact      5520
     acatcaacca gaaactaaag cctaagttca caccagccgt tatcagaaag gtcttaggag      5580
     caaacctgta cgagttagaa gacgtcctca cggggagaaa gggtcaatac cacgcgaagg      5640
     acataaagac ggattagaag tcaagctatg tctgcagatg aactctgcta accaggagca      5700
     ttgcgctcaa taaaatccgt catcatacgg tgaaaatgac ttcagtgagg tgtgatgagc      5760
     aacaactggg ataaactacc tctccacctc gaccaatcca gctccaaaga cagcctcagc      5820
     taggcgacca ccaatcttct gcggaaggta gcgataacac gcacagcgat caaccaaatc      5880
     aagtggtccc aacacgctcc catcgcgcca gggggcggac cacgcgccgt tcgcgaatcg      5940
     ggagaaatcg caccctgtta gactggaaac gggctgcagg gaactcttca gcacggcagc      6000
     acggttactg gattggagga gcagaagcct tgggtcgagg gcccaaaaag ccgggtcgac      6060
     ggaggttgac gcttacggcc actatccggc gcagaggagc aacgtcctgt tcggtactga      6120
     gagtaacact acaacacgac gatgagccac cgcgaaagcc atatgcataa agctatgtaa      6180
     acaagaatct ggtgaacaaa ctgtgcaaaa cccactaagt ggcagtaccg ttagccgttc      6240
     gggacaaatc gtgcagacga gttcggtgag caacaacaac tactaagtct acctcccaac      6300
     tttgaccata taacaccggc tatgggcaac atcagccaca atagcgcccc agcgaaaaca      6360
     cgtaaaacgg cagcaagaat caaaagcctg gaatggtgtc aaaactcgaa agagtagtcc      6420
     atagatagca aactcaaaac atagatccat ccatatcagt tgtctttaga gggtcgtcat      6480
     gaaatctcca ctgaaagtaa cgtgaccggg ggcgcggtaa aactcctaac atgggctcat      6540
     gacgattcta ggggaggaaa tgccccttta ctctaggcca gacaatacga tatacccaac      6600
     caaactatcc aaaatatgta aatatatgtt ttatgtttaa tccaatccag tttacaaaat      6660
     aactaaatag gattaagcta aatgtctgcc gaggcagcag gaatgtcatg agataaagga      6720
     taaagaactc agtcagagac agtttgccaa gacacagttg gtacactatc gcgatttgcc      6780
     agagataact ggtacattta gtttgaggtt ttgtaaggtt ttgtgaaatt aactttaagt      6840
     caataatcac tagagctcga ctctatggtc tctgatatga tccgtctctg accgacttct      6900
     tgaaggaagt tgaagagttt ttcatgaggc tactattcct cgcctcatga aaaactctgc      6960
     cgctttggta atgtta                                                      6976
//
ID   Gypsy-436_AA-LTR repbase;    DNA;    INV; 1504 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-436_;
KW   Gypsy-436_AA-I; Gypsy-436_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1504
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1504
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2071-2071 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1504 BP; 439 A; 364 C; 373 G; 327 T; 1 other;
     tgttgcgttt caaattgtgg tgtagaaatt tatgaccgtt agaatagtta tggtggaaaa        60
     aagcattaga acagtttaac atgtaaccag aatctataca aaaatagctc ctagccctgt       120
     cactagattg acaagaagcg agagcgccaa attttcttgc gctgctgccc tctcagccaa       180
     ccgtcacgta caatgacagc tgaacttccg ttgccaccac agtcacaaga gaaggagaaa       240
     actttgtgtc ggacagaaga gtgagcacga atcatatcgc gtgcagttcg gtcgtgagtc       300
     tcgttgggaa aagtcgttcc ggcgtcgtgc aaaacccacg acatattaga gttgatccgg       360
     gtcctcgcag cacatcagac cgcttcaaga cgaacccaaa aatcgctaga acaacgctct       420
     agcgagcaga aagagcaaat tttgggaaca gggagtgcgc acgaattctg gtcccagtcg       480
     taagtctcgc atgtgggaaa acttaacctc atttgtaata catcccctca acgcagattt       540
     tctggtcggt tctggaactc tggaacacca caagaactcg tcgcagtgag gtcatccgac       600
     tgcgtaggac gttaggaaat atcaactcac aaccgtaagt tgaaagcatt cgtgtaagcg       660
     aacccaacga gtaactcgca cattctaaca ggaacgtcca cagaatccca ggaggagagt       720
     cacgagatta gtactcctac aatcactcag tttcacccga agcaatccgg gaggacagaa       780
     aggccccaga agggtgagtc tagcgagatc tgaagacaat tgacgttttc taacaaccgc       840
     tgtttcatag ggcctttttc cacacgtggg atactgcata ctagacctcc ggagagacga       900
     cgacgcagac acagggctgg aacaaggatt cgttctgtag gccttctcca gtgaacgaac       960
     gccaacggcc cgcggtgcta gtgggtcggc cccactcgac gatgcggatc gcacaccgat      1020
     tgcaagtcga aggacgtgta aactgaccgs agaggttgat accagacaga cacgacagcg      1080
     cgtatttctt tgccccaggt gcccagcctc aactccaagc acgaacggcc atctagaggg      1140
     tccttcaggt ttgcatgccc acgagacacg gcgcgaatcg aatcgcccag cgagaaagga      1200
     tcctgcgcag cggacggcat tggtacaggg tgaggcagca gagcggtgag caaatgcaca      1260
     agttactcta aaaccaccaa aatgaagcat tatgttagat tttaagagaa atttgctcga      1320
     tatgagccga aattaggagt tttagggcca taggattaga tataacctat atcgggtgag      1380
     caaacccaga aaggcaaata aaatcatgtt cttataagct tattcagtct ggtttagcgt      1440
     gttttgagtg agccggaact gtccaggggt gttcgcttct cccctaaaca gttgactctt      1500
     aaca                                                                   1504
//
ID   Gypsy-438_AA-I repbase;    DNA;    INV; 5623 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-438_;
KW   Gypsy-438_AA-I; Gypsy-438_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5623
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5623
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5623 BP; 1777 A; 1073 C; 1317 G; 1456 T; 0 other;
     ttggcgatcc tagccatgat gatcaagtat tctggtagtg aataagtagg tggaatttcg        60
     tctgcagagt gaaaaaggta tttcgaaagt tttgattagg agcaaaagca aaacaaagcg       120
     ttgagccggt gtaagaccat ggccaacaat caagattttt agtcggtgta agtgcgagcc       180
     caaaaaaaat ccaaaggaaa acattgagcc ggtgaaagac catggccaac cagaagatgt       240
     ttgcatccgc aaaagatcgt tgccaaacga atagaaatgt tgagtcggta caagaccatg       300
     gccaacgatt tttgaatttc tgtgactaga aactagtgac tgatactgga aaatgttgag       360
     tcggtgtaag accatgacca acaattttca caatttattc attaaggaag cgcaaaaaaa       420
     aagggagttg agtcggtgca agaccatggc caacgtttta atgcaatgat gcttaagata       480
     aggtacggta tacataaaat acaaactact gtgcggcata cgtgactttt cctatcaggt       540
     tagtaaaaaa aaaagtaatg aataaatcaa catacaacca tcatgcaatt actgatttac       600
     ttataagaga acttttctgt tctacatact attctatata ctattctata ttctatattc       660
     tatatactat tctattctac aagatgaaga aaataaataa ttgaataatg ccatacctgt       720
     atacctatac ctcattgcta acaagattgt ggatcccttg ttttgcagat aataacgtat       780
     gtctggtgtt aaaccaccaa tgtttttttt tttttagctg tcatcttctt gcatcataat       840
     caagaacgaa aagtgagaaa ttgtttggca aacggtattc tctagtgtat cgagaaatta       900
     gattaaattc acgaaaaatg agcggttatt ggcacgagag tgatgtttca tcttcggatt       960
     ccgatctgga tggtaaatca gcagcggtta caacgagtga aggaaaatcc aaagcattat      1020
     gtgttgctgc tggctgctca ccaaacgatg ggggtcaaaa gcgaatgaaa gcagaatggt      1080
     tatccggatc atggccatta aaagcattgg acggatctct acctacacat aaacggaaag      1140
     cggaatgggt gcgatttcgg gaccaattcg aaaggattgt ctcgtgcaag gccactgtgg      1200
     atcctgttac caagctgacg ggtatgaaga tttttgcagg agattatctg ttgaacatca      1260
     ttgagatgca ggagaagctg gtgacagaac aggcaaccga tgtttatgca ggtacaatca      1320
     aagctcttga taagttcttc aaccagacgt gtgataccag caaggagcgg atgatttttc      1380
     gtgagatgcg aatggatacc accgaacctt tcgtcgattg ggtgcttagg ttggagaaac      1440
     aggctaaatt ctgcgagttt ggagaagaac aacgaaaaga agagttcatt caggcactca      1500
     taaggcgatc agttcctgtg attgctgaaa aactgtatga aatgtcgcac atctgggata      1560
     acgatatgga gaagattgtg aactatggaa aacatttgga ttatatgaga gctgaaatta      1620
     aggaagcaag tgacaaggct aaaacgagct ctaacgctaa tgaggcaatg gatactgaca      1680
     gcgagtcccc gtataaggca gtcaacgttt tgcacaaccg aggacacaag gcgttttcga      1740
     atcgcttcga gccatatcgt cgaagggaag tcaaccgttc gagtattctt cagcgtagga      1800
     cgaatctaca cactggtcgc agaagtgatt caagccgaac ttcaagatgc aacaaatgtg      1860
     gaacatctca tcggccccga gactgtaagg cgttccgagc caagtgcttc aattgtgaca      1920
     tggtgggaca ctttgctgag ttctgccggg aaccatccag aagtggggat aggtcgagga      1980
     gcttgaaacc aagttatcgt accgactaca tcaaggagca ggccagctca attaatcagg      2040
     tatcttttga aaacaccaat gactaaatac acatgtacaa ttacactttt ttgttctatt      2100
     cgaattgcaa tgatctatct gaaattgtat acaatatgtt atcaataaac cgtagaatca      2160
     atatcacgca tccgttttca ttgggttatt tgcttcgctt gtttttcatt attatttcag      2220
     ttgattactg gcagtaccat tcctccaaaa caagatgatc ctagatttgt tcggtgcagt      2280
     attgggtccg aacaactcaa gtttttgatt gactccggcg ctactgtcaa tactatcaca      2340
     agttcgtatt ggcaaacaat caagcgcaac tgtcgaactg ttatccaaga tgttacagtt      2400
     tatcctgaag atgttcttca agggtacggc agcaagaaac cgctggatgt agaatgctct      2460
     ttcaaggcgt atatttcggt cacgggatgt gttaagccta tgcaactggc gaagttcttc      2520
     gtaattaaag gtatttgtca ttgctaggtt acgacacagc atgcaagctg gacattctgt      2580
     gcattggacc attcgaaccg atcaattttg tggcgttgaa tacaatgcat agttctgcta      2640
     aaccagaact attccccaaa atacctattg atgcggtaaa gttcaaggtg aacgattctg      2700
     ttacgccgaa acaaattatc aggtacaaca ttcctaaggc atttgaatcg gcagcgaatc      2760
     tacgattggc ggatatggaa gcacagggaa tcatagagag agctgataag gagcaagacg      2820
     tgatctcttt tgtgtctcct ctagtgctgg ttccgaaagg atcgacagat tttcgcattg      2880
     tcgttgacta ccgcgctgta aacaaagcca tagtacgaga accctatcct atgccgagct      2940
     tggagaagat ttggacaacg attccgaacg gagaagggac attatttttt acgaaattgg      3000
     acctgaaaga cgcctaccac cacatcgagt tacatgagca agttcggcac tatacaacat      3060
     ttatgacagc taatggttta atgcgattca cgagattgcc gttcggactt tcctgtgcac      3120
     cagagctctt ccagcgcact atggaaagat tattagctaa ttgcaaaaat gttatcatat      3180
     atctagacga tattttgatt tacggtagaa ccttggaaga gctgaggagt tgtgtggcgg      3240
     cagtcaaagt tgttctaaga accagcagtt tgacaatcaa cgagcaaaaa tcgcaatacg      3300
     acaaaaccga ggtcgacttt ctgggattca ctatcgatgg tactggaatt cttccaatga      3360
     aaaagaaaat ctcggatatt ctacttttca agcgacccaa ggatacttcc gagttacgca      3420
     gtttcctcgg aatgatgaca ttcatcagtc ccttcatcaa aaacttctcg catcaaacga      3480
     aaccacttcg tgatctcgtc accgcagatg cccaattcaa atgggaaagt tgccaccagg      3540
     aagcgttcga gagcttgaag atggcagctg agaaccattt ggtgaaaagg ggatattttg      3600
     acgaacggga taagctgatt ctgtatacag atgcgtcacc gtggggcttg ggggcggttc      3660
     tagcccaaga aaaagactac ccatatgaaa gacgaatcat tgcctgctca tcgaaaagct      3720
     tgactggtgc agaaagtcga tatccacaac tacatcgaga agcgttggct atagtatggg      3780
     ccatggagag attttcttat tatctgctgg gacgaaagtt tgtattgcgc tcagatagcg      3840
     aggcccttct gttcatgact aaaaaggatc ataacagaga tattggaaaa cgaatactat      3900
     ccagagttga gggatggcta ctgagaatgg atcactacca atacgagttt gagcatgtga      3960
     tgggtaagga caacatagct gacgcggctt caaggattgg tggtaaaaga gaagatcaac      4020
     tattcgataa cggcgaagag ctgcatgaaa tttgcgctgt aacagccgac acgaaggaaa      4080
     tcaacagtca gttgctggca ttgacgaatg tacaggttag agaggagttt gctaaggaca      4140
     atgaacttca ggaagtcgct cagtggctga atgaactgaa gagatggccc agcaacattg      4200
     ccaagtacca agcttttcag caagatctgt acatgcaaga tggactactt atgaaacgag      4260
     aaaagatagt gttaccaact gaattacata gtcgtgctct gtcattggca caccgtagtc      4320
     atccaggaat gtctacgatg aaacatttcc taaggcaagg actctggtgg atgggtatgg      4380
     atcgtatggt tgaggagttc gtagcgagct gcccagaatg ccaattggtt actaaaacaa      4440
     gcaaaccgct tccgatcaag atgactgagc taccgaagaa tccgtgggag tatgtgtcta      4500
     tggacttcgc atcggcatca gattcccaca attggaaggc actggtgctg actgataact      4560
     attcccggtt cctcgtagct ataccgatgg acaaaaccga tactgatgcc gtaaagagag      4620
     tactcaggag aattttcaat acttactacg tcccaaaaac cttgaagtct gacaatgggc      4680
     cgcctttcaa cagcacagag cttaaagagt ggctgaaaga ccattggggt gtgaaactga      4740
     tccacactac accattgaac ccgactgaaa atggccttgt tgaaagaagc atgcaaggca      4800
     taaataaaat aacggctatt gcacatcttc ggaaggataa ctggaaggag gcacttgctg      4860
     attacgtggt ggcgtataac tcgtggcccc atcatgtcac caaaatacca ccggccgagc      4920
     taatgtttgg aagaccagta agaggtttgc taccagatat acgggctgat catcagcaaa      4980
     tggatgatga cgaattacgc gaacgtgatc gaatagctaa gtttggccgg aatattcgag      5040
     aagacattcg ccgaggagct catgatctac agataagtgt tggagataca gttcttgtag      5100
     cccaccagaa gcgtgataaa gcagaggcag tgtacaagaa tgtgctacat aaggtagtta      5160
     aaataactgg agaaggtcga gctacactgg aagatatgac gacgaacaaa acatttgata      5220
     ggaacgttaa gcatttgaag agattcatgg aaagaccccc agcaaaggaa gtagtagata      5280
     atgtcaaggg taaagtatga taatgattgt tactttaaag catggtccta atattagaga      5340
     tatctcatgt gtttccatta tttttttttt tttttatccg cagagacacc tgaaaaacag      5400
     aaatcaagcg actcggtaag gcggatggat gagagctgtg aaatggagga aggagaagtg      5460
     gtatgcgata caacggccga gattcaggct gaagaatcga ttcctaaacg ccgagcatac      5520
     cggattatca agcgtccgca gcgatacctg aataatgtga ataattttga aaatatgtaa      5580
     tacttgcaaa accatttcat ttctattttg ttcatgggga gga                        5623
//
ID   Gypsy-438_AA-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-438_;
KW   Gypsy-438_AA-I; Gypsy-438_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-151
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-151
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2072-2072 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 151 BP; 43 A; 16 C; 44 G; 48 T; 0 other;
     tgtggcatcc tggtttgagt taatagatag atgggggagt tgagttgagt gtgtgaacga        60
     cggtgtagag ggaggcaaat aaaatggaca ttgttcgaat gtttcaagtt aattcctggt       120
     tctgttatta gtgaaaatac cgattatcac a                                      151
//
ID   Gypsy-439_AA-I repbase;    DNA;    INV; 5873 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-439_;
KW   Gypsy-439_AA-I; Gypsy-439_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5873
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5873
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >95% similar to each other.
XX
SQ   Sequence 5873 BP; 1802 A; 1140 C; 1396 G; 1535 T; 0 other;
     cattggcgac cgtgacaggt gttttgtagt tatttgaaat atgcaaaaaa aaaacgaatc        60
     tatatcttca gaaaggaatc acccagcatg catcataaaa tatgtaaagg tgttcaatgt       120
     gaaatttaat tggttaaaaa aaatgattag aaaggcatga agcctgttga tcgacgtgca       180
     gcgtttttgc aatgctttct cagaacaaca gttcggaatg agtagtacat aataaatggc       240
     atacatcggt aaaaactcgg gacgagaaga atttagctcg ggacgagcat atacacaaaa       300
     atgcgtctat tagctcggga cgagcctaaa aagtgagcac attaacaaaa atgcaactat       360
     tagctcggga cgggcccaaa aaaaaaagcg attagaagct cgggacgagc acttatatga       420
     aattctacga agctcgggac gagcactgcg aagagttaga tattttgaat tagctcggga       480
     cgagcagctg aaaaaaaaaa aaagattatt tagctcggaa agagcactct gttagcaaaa       540
     aaaaataata ataataacaa ggaataccag tgtatatgct ggatgaatat ttgggtgtat       600
     tagtgaatga ccgacattca gaatattttc taccttacat gtactcgtga atctctcata       660
     taaaagttcg ttagttcaag gtatgctcgc agtgtaatag tattagtgga ttaagtggtg       720
     acaggtatgc actactcacg aaaaaaaatc aagccggaat tttgagtttt actttactca       780
     atattaagta tatcgattac tctttcaacc caaaatctct cggtatcctt ttttttccta       840
     taaatgcaag aggtgacatg agacaataat taacaatcca atattgattc aacatggcat       900
     catgagttat tgtttggttg ttttgagagg gacatacata tgttttatgg gtaagaaata       960
     actgtaattt aagctaatac aatggttggt agcaagtgaa cggaaaacag gatttaattt      1020
     tgttgtgccg aaatttgcaa actgttttcc gttttggtga tgttggcaaa acgccctttt      1080
     caaatattgg tctataagta tgacggtgtt tgtgcaagct tttttttttt gtttacctgt      1140
     catattcgaa gctgtacgca acacagtttt gcagcttcta acgtgaagta aacgttctgg      1200
     aactcggtac gttttcagtt gttttcgaaa atctacagta aattgggatt gaaaaattgt      1260
     gtattcgtta tttcgacagg ttcgacatct tcatcaatca tcaaaataat cagccgccgt      1320
     gtgaaaccat gtcaagtcca ggaagatacg ttcgtgctcc agtgctcacg gagagcgata      1380
     gtgaggaatc agcatacttc cgttcatcaa atccgggaag atttgtgcga ttagagccaa      1440
     atcgtgtcga caacatcgcc gatgaagttc attcatttga agactacgat gtggttgttg      1500
     acccggatag agccaataga gagttgagag aaaaagtcgc acagcttgag aaagcgatct      1560
     atgaaataac aggcaatagg agtcgtaagc atagtgatga ctcagagacg gcccccaaca      1620
     agactgccgc acaagaaccc acaagctcac aatcaacccc agcgccaccc gtgatttcac      1680
     ccgacactgg attgtcatgt gtccgttggg acaacatcaa acaatttccg aacggcattc      1740
     cggcaaatga aatgtgggag acatggatga agttcatcga gaatttcgaa acggcagcat      1800
     ctttgtccaa tgtacatgac cctgttaagc gatcccagct gctactgctg tcggtcggtg      1860
     atgagctcca ggcaattatt cgtacggcca agctacgtcc caatacgaac gatcccgggt      1920
     gttatacttc tttcgtgaag aacgtcgagt cgtatttaaa atcattgacg gacacttcgg      1980
     cggagcacga tgcgttttga ccatgcgaca ggagaaagga gagtctgtgg ttaagttcca      2040
     tgcaagacta atggaacaga tgtggttatg cgactataac ccatcagagc aagatcgttt      2100
     cgttcgaacc cagttaatca gagggttgag aaatcgcgaa ttagcaagag cagcaagaac      2160
     ttacgcacat acgactaact ttattgtgca gtctgcgacg cgagacgagg cttttcagtc      2220
     tgaaataatg acacccgaag atccagcaat tatggctatt tccgagaagc attcaagagg      2280
     catggaaccg aagatggagc agcgtaagcg tgaaactacg gtagagcgaa acacaggaca      2340
     tagggcaaag caatttcgtc gtgatggaag gtttccctgc tacgccatga actttgttca      2400
     agatgtaatc gtgcgttcca cagaggtcaa ttgtgcccgg ctcatttcgc atcaacatgc      2460
     cgtagaaaga aagtgaatgc cgtaacagga gaatattcca atccacgcgt ccgcgatgaa      2520
     gacagcaagg accaggtaca ggattaattt gatttgtctc actgataatg ttttgaattt      2580
     tctgcaaata taacatatca tttatacagt atttgtttgt ttttttttat accttacgaa      2640
     ttttttttcg tttattttag ctgatcaatg cactctctct tgaggaagtt cttgttgatt      2700
     gcaagttggc ttcatcgtat tccatccgat ttttaattga ctccggggca gatgtcaatg      2760
     ttatcggcgg gagtgattgg aaaaagttgg aggaagattt tatgtctagg tcggggttag      2820
     aaccgataga tatcgaagaa tcgtggacta cgcggatatg ctgctgacaa accgatggta      2880
     gtcgaatgtg ctttccgtgc agaagttcaa gctgatggaa tcaataagcc agctgttatc      2940
     gcggatttca tggtgttgaa agacggtcgc tgctcattgc tcggtcggag cacagctagt      3000
     gaaatgcagc tgttgaaagt cggcttggaa gttttgcatc tagaaggagt agtgccgaat      3060
     atttttccga agatgcccgg tgtgaaggta aaattcgtgg tagataaaaa tattacccca      3120
     gagaggaacg cctacttcaa tgtcccagca gcgtatcgtg aggcagctag gagtcgtttg      3180
     aaagagatgg agtccaacgg aataatcgaa aaggtgactt cccctccgga atggataagc      3240
     ggtatgtcgg ctgtcccgaa aggtaaggac gatttccgcc tagtcgttaa tatgcgggca      3300
     cctaatagag cgataaagcg tcagtattat cgactaccac tgattgagga catgaaagta      3360
     aaattacacg gtgctaaatt tttcgcaaaa ctcgatttgt ccaacgccta ctaccacctt      3420
     gagctggaca ccgaatcgcg agatttgacc accttcttgg cagaagatgg gatgtatcgg      3480
     tttacccgac ttatgttcgg agtaaactgt gctccagaaa tcttccaaca tgaaatgtgc      3540
     cgaattctgg agcccgtgaa gaacaaaata gtctatatag acgatgtcct gctttttgct      3600
     gaaactcagg aggaacttcg acagatagta gctcaaacgt tacggatttt gagagcgaat      3660
     aatcttactc tcaattcgac caaatgtgag ttttaccgga ggaaaataaa atttgttgga      3720
     cacgagctgg acgaaaacgg gttccacatc gaggaatcga aaataaaaga cattcggaag      3780
     tttcgtcatc caacaacccc ttcagagcta cggagctttt taggattagc atcctacgtg      3840
     agcccatata taaaatactt cgcggaaatt tcatcacctt tgtgggctgt tatatcatca      3900
     aaaacttgga tttgggaaga tgagcaacag aaggcatttg agttattgaa ggatcgccta      3960
     gtcaactgca cagtttcatt gggatatttt gcggagaacg atgaaacgat tttgtatacg      4020
     gacgcgtcgc ccaatgcatt gggggcggtg ctcgttcaaa ccgatgagaa acgatcctcc      4080
     cgaataatta gtttcgcgtc gaaggctttg accagcaccg agaagaggta cgcccagaac      4140
     cagcgcgaag cattggcggc tgtatgggca gtcgaacatt tttcgcactt cctgctgggt      4200
     cggcatttca cgctgcgcat cgatgcaaga ggtatcacgt tcattctcaa cagaacccgc      4260
     gaaacttcta aacgcgcttt gactcgagcg gatggctggg ccttacgact aagtccttat      4320
     cgctatgatg ttgagttcgt gaaaggacaa gacaatatcg cggacccgtc ttctcgtctg      4380
     tatagtggac atgatgatgc tttcgacgac gaaacaagcc cttgggaaat tgcccattta      4440
     gatgcacatg gtgctgagct tttaaccgaa aaagagatta gagaagctac taatcgtgac      4500
     cccacactcc aacgtgttat ggattcgttg gaaacaggag attggtctga agatcttcaa      4560
     aagtacgaag cagtttcaag cgaattgcac tgtaaagaag gtatgctggt gaaacaggga      4620
     tgtgtagtag ttcctgacga gcttaggaag aaaactttga aagtagctca cgcgggacac      4680
     cctttaaccg caaaattcaa aagtatatta cgtgaacgtg tttggtggcc gggaattaca      4740
     ggtgacgcag aacggtgggt agaatcatgc gctgcctgtg cagtaaatgg gaaacccgaa      4800
     agacacacac ctatgaagcg tacaccggtt ccacgaactg tttggcaggt tatcgcgatg      4860
     gacttcaatg ggccgtacgt aagatttggc ggaatattga tattagtggt cagtgatcta      4920
     aggtcaaggt ttgcatttgc acgcccggtc aaatctacgg cttttgataa cacgaaaagg      4980
     gttttggatg atatatttga aatagagggc tttccaaagt ctgtcaaaac agataacgga      5040
     cccccattca atggggaaga atacaaacag tattgcgcgg atcgtgggat ccaaaccatc      5100
     tattcaacgc ctttcttccc ccagcaaaat gggttggcag aaagtttcat gaaagtagtc      5160
     aataaagcga tggctgcagc gacatctagc ggaaacaatt acgtggtgga attgcagaat      5220
     gctgttcatg cctacaacgc aggtactcat tcagttaccc atgtcccacc agaagaagta      5280
     atgatgggta ggagaatcag aaggaatttg ccgttactgg actatggaaa agcgaagcac      5340
     gacgaagatt tgatcaactc cagagatcgc gaagccaaaa tgaaaggaaa gataagcgaa      5400
     gacaggcgca ggggtgcaaa aaccagtacc gtgaaacccg gtgatgtggt gataactgaa      5460
     cgtcagtcga agggcaaagg ccaatctcgg ttcaacgcga agcgttatac tgttctaaca      5520
     gaaaacaatg ggactttgct tctcaccgat caggaaggac acacaattcg gcgacacgtg      5580
     acttaaacaa aaaaggtgca tgaatggaga agcactcttg gaacgaatag tcaacaaggt      5640
     ttcgacaaat taacagtcaa tactgattca aacaggccga aaagggaatc aaaagctcct      5700
     tcttacttgt cggattttgt tcgtttaatg gaagatgaca cagtgtagcg tgattacaga      5760
     caatatcgtt tttctttcat tgttccaaat aaactgatat gtatgtaaaa taaaacaaaa      5820
     acatgtttcg tccttttttt atttcattct ttttccgtga gaaagggggg aga             5873
//
ID   Gypsy-439_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   25-JAN-2019 (Rel. 25.07, Created)
DT   25-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-439_; Gypsy-439_AA-I; Gypsy-439_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-205
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-JAN-2019).
XX
CC   A sampled sequence.
XX
SQ   Sequence 205 BP; 53 A; 42 C; 55 G; 55 T; 0 other;
     tgtgtggtgt tggatcagtc tactcgttat gaaaagtacg gtaacatgta ccagtctaat        60
     acatgtcggg ttagtcagtc tcagtacaat atttgaggag gaagacggca ccaactctct       120
     cttcaaccga tcgaacccgt gggaagtcgt ggccagtcat acactacggc gcgttgggtg       180
     attcctggta aatggtggaa ttaca                                             205
//
ID   Gypsy-43_AA-I repbase;    DNA;    INV; 4131 BP.
XX
AC   supercont1.107;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_AA_;
KW   Gypsy-43_AA-LTR; Gypsy-43_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4131
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.107; Positions 2200593 2204723.
XX
CC   Positions [1776-2237] - Reverse transcriptase
CC   Positions [3205-3678] - Integrase core
CC   'ATAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           624..2780
FT                 /product="Gypsy-43_AA-I_2p"
FT                 /translation="MRRKKKPGETIETYFYDQVALGRKGKFDDKTIIKYVI
FT                 AGVEDAHRAKGVTISMPRSLPELLEQLKWLDGLGGMRSGTSEGGRATKGEK
FT                 TFYRCSKSGHIADQCSENQKSRKCFRCGSDWHLAKNCTVGRNGEPSRAVKV
FT                 IAVDDGFEKIVSIDDKQMMALIDSGSRVTTMKSSFSQKFGNRQPVDLILKG
FT                 FGGRRIRVTEKVVAILKVDDIEENVEFVVVPNFAQDLPVIVGKDVLKRDTV
FT                 LLTKKNGKVWLAKGECCEQDAGDLQSERSVRDVCSIEAYEPISVEDLNMDG
FT                 SDMSKEDLLECVTDNRDCFSKNYRELGKAKCVELEIVLQDQKPVYEKPYRM
FT                 EFSREAELNMIVKELLEAGIIEPTSSAYSSRASMVPKKEGEFRMVVDYRSL
FT                 NQKTVKDRFPMPTIEYCLSKLVGGEIFITVDLFSGYYQIPVAVNSRKLTAF
FT                 STMDSHYQFVRIPFGLVNGCAVFQRAMNQMVAELKDDNVVVYIDDVILSGK
FT                 TEEEVFEKFKRLLNALRVHGFTVNLKKSQFSKRSVDFLGFEVSKKGVKPGD
FT                 RKIEAVEKLPEPKSKQEVQQFLGLTGYFRRFVKGYSFRASSLVELLKEEVE
FT                 FKWREEQVKAFEDLKRALVSKPVLALYDPASEMELHTDASAIGLGGILLSL
FT                 TAEGWRPVGYFSRKTSEQEAKYFSYELEVLAVVSSVERFRQYLLGRPFKVV
FT                 TDCSAVTQTFASQPLWRSC"
FT   CDS           2797..3804
FT                 /product="Gypsy-43_AA-I_1p"
FT                 /translation="MFHVMQLEIDEDDFLVTMQRQDPKLLAIMESLVQPIQ
FT                 DNYDRQVRHDYELVQNRLMRKIGDEQKWVVPERVRWRILKAYHDDMGHMAE
FT                 EKVLENMKKKFWFKRMRHYVKEFIKACPKCAYNKAKGGQTEGKLYPIPKIA
FT                 VPFQTIHLDHIGPFPKSANGNVHVLVLVDGYTKFTFLKAVRSTKSELVVKT
FT                 LVDLTAIFGTPQRVITDRGTAFTAGVFRKFCGEHHINHVFVAVGSPRANGQ
FT                 VERVNRALLTAIRSTLDEDRKWDNCLPSIQWAINNTLNATTRVSPSDLVFT
FT                 FKPRDIIRNEIVLVIHDETDNRIDNMDELQKPAEENIREKQQSQ"
XX
SQ   Sequence 4131 BP; 1202 A; 776 C; 1200 G; 953 T; 0 other;
     tttctgtaga caggataacc gtgtgcgaag taaactcacg gagtctggag agcgaatcgc        60
     gagttttcgg taatcgtgtt gtaggccaag gatcaaaatc cttcgccggt gatagagcca       120
     cgtgcaaaag acaattggaa attgtggctt tgtgatatcc gctattgtgt ggctggacaa       180
     agaaaagccg ggtctgagta acaatggacg agttgcgcgc gaaaaatctg gagttggtgg       240
     ctaggttgga ggagctaaaa gcgaagcttg cagagggccc aaagatcgag cccgcagcta       300
     gtgcatcgca gacagcgagc atggtcccgg atgtgtgtag gccaggccgc tttgaactag       360
     aaacgctagt cagcgatttc aatccggaca tacccacttg tgagtcggct gaaagctggt       420
     tggagaacgt tgatgcaacg gctgatgcgt atggatggcc tgatctcacc aggttttact       480
     gcgcgagaat gcacctgcaa ggagcggcga ggctttagtg gaatggggtt caaacgactg       540
     tgagaacgtg ggctgtgttt aaagtgaaac ttctagaagc gttcccggaa gccaacgatc       600
     cagtttccat tcatgagcag ctaatgcgaa gaaagaagaa gcctggtgaa acgatcgaga       660
     cctacttcta cgatcaagtg gctttgggca ggaaaggcaa atttgacgat aaaaccatca       720
     tcaaatacgt tattgctgga gtggaagatg cgcaccgggc aaaaggagtg acgatctcga       780
     tgcctcgtag tctccctgag ctgcttgaac aattgaagtg gttagatggt ctggggggta       840
     tgcggtcagg cactagtgaa ggggggagag caacaaaagg tgaaaaaacg ttctatcgtt       900
     gttctaagtc cggacacatt gccgatcagt gtagtgagaa tcagaaatcc cggaaatgtt       960
     tccgttgtgg atcagattgg catctagcga aaaattgtac cgttggccgg aatggtgagc      1020
     cgtctcgtgc agttaaagtg attgccgtcg atgacgggtt cgagaagata gtgtcaatcg      1080
     atgataagca gatgatggcg ttgatcgata gtggaagccg agttactacg atgaaaagct      1140
     ccttttcgca aaagttcgga aaccgacaac cagttgacct aatactgaaa ggttttggcg      1200
     gtcgtcgaat ccgagtgacg gagaaggttg ttgccatatt gaaagtggac gacatagaag      1260
     aaaatgtgga atttgtggta gtgccgaatt ttgcccagga tttgccagtg atagtgggta      1320
     aagatgtatt gaagagagac accgtgctgc tgactaagaa aaacggaaaa gtgtggttgg      1380
     cgaaaggcga gtgctgcgag caggatgctg gagatctgca gtccgagaga tcagtgcgag      1440
     atgtatgttc gatcgaggcg tacgaaccca tatcggttga agatttgaat atggacggat      1500
     cggatatgag caaagaagat ttgttagaat gcgtgacgga caatcgtgac tgcttttcga      1560
     agaactaccg tgagcttgga aaagctaagt gtgtagaact agaaatagtg ctacaagacc      1620
     aaaagccagt gtatgagaag ccgtatagaa tggaattctc gagagaagcg gagttgaaca      1680
     tgatcgtgaa agaactatta gaagctggca ttatagagcc aacatcatcg gcatatagta      1740
     gtcgggcctc gatggtgcca aagaaagagg gtgaatttag gatggtagtt gactaccgtt      1800
     cgctaaatca aaagacggta aaagataggt ttcccatgcc gactatcgag tattgcctga      1860
     gtaaattggt gggcggagag atcttcatta ccgtggactt gttcagtggc tactaccaaa      1920
     taccggtagc tgtaaacagc agaaaattga cggcgttttc aacgatggat agtcattacc      1980
     agtttgtgag aatcccgttt gggctcgtga atggctgtgc tgtttttcaa cgagcaatga      2040
     atcagatggt ggcggaatta aaggacgata atgtggtggt ctatattgat gatgtgatcc      2100
     tgagtggcaa aacggaagaa gaagtgttcg agaagttcaa aagactactg aatgctctgc      2160
     gagtgcacgg atttacagta aatctaaaga agagccagtt ttccaaacgt tcagtggatt      2220
     ttcttgggtt cgaagtgtca aaaaagggag tgaagcccgg agatcggaaa atagaagccg      2280
     ttgaaaagtt gccagagcca aaatccaagc aggaagtaca gcaattcttg ggactgaccg      2340
     ggtatttccg gagattcgtg aagggttaca gctttcgagc gagttctttg gtggaattgc      2400
     taaaagaaga ggtggaattc aagtggcgag aagaacaagt gaaggctttc gaagatttga      2460
     aacgggcatt agtctcaaag cccgtattgg ccttgtatga tccagcgagt gaaatggagc      2520
     tgcacactga tgcgtctgcc atcggattgg gcggtattct actgtccctt acggcggaag      2580
     gatggagacc agtgggctat tttagccgaa aaaccagtga acaagaagca aaatacttca      2640
     gctacgagct ggaagtactg gcagtagtct caagtgttga acgttttcga cagtatttac      2700
     tgggacgacc gtttaaagtg gtgaccgatt gcagtgcagt gactcaaacg tttgcgtcgc      2760
     aacccctttg gcgaagctgt tgaagtagag ccagtgatgt ttcatgtgat gcaactagaa      2820
     attgacgaag atgacttcct ggtgacaatg cagcgacagg atccaaaact actggcgata      2880
     atggagtcgc tagtacaacc gattcaggac aactacgatc ggcaggtgcg acatgattat      2940
     gagttagttc aaaatcgatt gatgcgaaag atcggcgatg aacagaagtg ggtggtaccc      3000
     gagcgagtac gttggcgcat actgaaggca tatcacgacg acatggggca tatggctgaa      3060
     gaaaaagtgc ttgaaaatat gaagaagaag ttttggttca aacgaatgcg ccactacgtg      3120
     aaggagttta tcaaagcatg cccaaagtgt gcttacaata aggcgaaggg tggacagacg      3180
     gaagggaagc tgtacccaat accgaagata gcagtgccgt tccaaacgat tcatctcgac      3240
     cacattgggc cgtttcccaa atcagctaat ggcaacgtgc acgtgttagt gttggtagac      3300
     ggctacacca agttcacgtt cctgaaagcg gtacgttcaa ctaaatctga gctggtagtg      3360
     aaaactttag ttgacctgac ggcgatcttc ggtactccgc agagagtgat caccgatcgc      3420
     ggcacagcat ttacggcagg agtatttcga aaattctgcg gagagcatca tatcaatcac      3480
     gtgtttgtgg ctgttggttc tccgagagca aatggacaag tagagcgggt gaatcgtgca      3540
     ttgcttacag cgatccgctc aacgctcgac gaggatcgaa aatgggacaa ttgcctaccc      3600
     tctatacagt gggcgatcaa caacaccctg aacgctacaa caagggtctc acccagtgat      3660
     ttggtgttta cgttcaagcc gagagatata attcgcaacg aaatagtgtt ggtgattcac      3720
     gatgagacgg acaaccggat cgacaacatg gatgagctgc agaagcccgc cgaggaaaat      3780
     atacgcgaga agcaacaatc gcagtagaga tattatgatg ccagaaggag agaagccagt      3840
     aaatattgcg aaggtgacat ggtgttagta gagaaggatg ctgtggtgat tggaggtatc      3900
     cgaaagctcg aaccgaagtt caagggccca tacatcgtag ctgaggttct tgggcatgat      3960
     cgttaccgaa tccgtgatgt tccgggagcg caacgaaaga cggcagcgtt ggatacggtg      4020
     tacgcagccg accgtatgaa acgttggtgt gtgatgggaa atctagacgg cgacgaacac      4080
     ctcgatgaca tcggtgattg atggggcatc atctacgcag tggtgtcaga t               4131
//
ID   Gypsy-43_AA-LTR repbase;    DNA;    INV; 239 BP.
XX
AC   supercont1.107;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_AA_;
KW   Gypsy-43_AA-I; Gypsy-43_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-239
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.107; Positions 2200354 2200592.
XX
SQ   Sequence 239 BP; 84 A; 34 C; 47 G; 74 T; 0 other;
     tgtaagctag atatcataca taaagtgaat ttgatcccta agtggtagtt tgctataaac        60
     caatacatgt tctgaactca aaatgaactc tataatataa gtgagtgacg gcaaaaataa       120
     ttgaccgaag atgtaataaa gattagtcct aattgtacct tcatggacta aagactagtt       180
     ctaagaatcg gtgcgttttt cggtagattc gaaaagtctt tgggtacgat aggtttaca        239
//
ID   Gypsy-43_AnFu-I repbase;    DNA;    INV; 5767 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5767
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2927-2927 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           752..1873
FT                 /product="Gypsy-43_AnFu-I_1p"
FT                 /translation="MLEIIEDDVQTLVKILNNLKKSIYKRFRPETLEAKLN
FT                 YSIKLFEEIERQLITNEKDIPRNHLDFLIKLSRETNFQIKEIISRKLQEEQ
FT                 YIEKRNTVTMSPPSETPFDIKTATSLVQSYDGSPEGLDSFLDSVSLLQDIT
FT                 PQQHIATAIKFVKTRLNGRARFALSSNPQNLADLATAVKQACKSLETPESL
FT                 VAKLKSTKNKGDQQKFCNEVEALTQKLTSLYIDSQIPPGQASKMATKAGVD
FT                 ALINAAPNTETRIILKANDFDSIQKAIQKVNELQSEQPAQVFSLFNRGRGR
FT                 GSYNYRRPNVQRNYHNNNYEDRNVRGRNRGYSNQRGRLWNNFQGRAMSQGR
FT                 ANLLYAQTENGQVPQQITVGGTESSQTPEQQ"
FT   CDS           1780..5499
FT                 /product="Gypsy-43_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SQSALCSDGKRAGPPANNSWGHRIVTNTRTTITNNQP
FT                 DVVKNCFNINTSCTNFIQVQLGLYNHKCTLLVDTGAELSLVKSNSIYQLSS
FT                 IINTDEILSFTGINTLPVKTIGSLSTEIVLPNNLTIKHKFQVMDSTFPIPT
FT                 DGILGRDFLRKYRCTINYDTWLLSGYFNSDKVYIPIEDNIEGKFILPPRCE
FT                 VIKHVDTDKLTEDHLLISDEIVPGVFCANSIMNNSCKIVKFINTTENYAFV
FT                 DKKFPKSLVPLKNYDIYTFDSINKTNREAKLFSELKLDRIPGDYQQGLTEL
FT                 CAKYNDIFALKGDTLTHNNFYKQVINLNDNVPTYIKNYRTPQAHKSEINRQ
FT                 VEKMLNDKIIQPSISPYNSPILLVPKKSTTNEKKWRLVVDFRQLNKKISAD
FT                 KFPLPRIDDILDQLGRAKFFSTLDLMSGFHQIEIDTKSKKYTAFSTDNGHF
FT                 EFNRLPFGLNISPNSFQRMMTIALSGLSPECAFLYIDDIIVLGCSIRHHLK
FT                 NLEEVFVKLRKFNLKLNPEKCKFFCSEVTYLGHHISQNGILPDKSKYSIIK
FT                 NFPTPENSDDVRRFVAFCNYYRRFIPYFSEIALPLNSLQKKNANFVWSNEC
FT                 EVAFRTLKEKLVSPQILQFPDFNKRFVLSTDASKNACGAVLSQPHGNIDLP
FT                 IAYASRTFTNGERNKSTIEQELIAIHWAITYFRPYLYGRRFTVRTDHRPLV
FT                 YLFSMKDPSSKLTRIRIDLEEFDFEIEYVKGKENVGPDALSRINIDSEKLS
FT                 NISLLPVQTRSMTKPKPSWENQKSTPSEIDHLKAYDSINNIDAFNMPKLVF
FT                 TTQNNDLYVKIMTKNVKKAFAQAQFPYALKSFDLKEYVRSIDEMAKTLKIK
FT                 QLAMANNNIVFALIDKQLFKTICNQVLKFVDIILYTPAQIITCKKEIDKII
FT                 AENHDTPSGGHVGTSRLQKKLRSSYYWPNMKTTINNYVKKCTQCKQNKYTQ
FT                 KTKEAFVKTTTPIQPFDVVSIDTIGPFTKSVDGNRYALTAQCELSKFIIVV
FT                 PIPDKQAKTLAKAFVENCILIHGCPLTIKTDLGTEYKNELFKDICKLLNIQ
FT                 QNFSTAYHPETMGSLERNHRCLNEYLRQFVNETQDDWDSWLPYYVFCYNTT
FT                 PHSTHQYSPFELIFGKPANIPQAIQNCNNLEPIYDYDSYFTELKFKIQSAI
FT                 MNTRISLERAKVTRNTKQSAEANSLNLSKGDTVWIKKESRRKLDSVYEGPF
FT                 EVTLMEYPNATIKNKLTNEMQKVHSNRLIK"
XX
SQ   Sequence 5767 BP; 2163 A; 1128 C; 998 G; 1478 T; 0 other;
     tggcgaccgt gacagtgtaa caaaaagtga taaagtgaac ggccagtgtt gagaggatca        60
     atccctagtg agacttagct ttagtgagtc cccacaaaac gcactacaga cccaagatcg       120
     acacaatatt atcgatgggt aaaaagcagt cgaaagtttt acaaaattcg ggcgatccgc       180
     aggtgcaaat cctgaatcaa ctggatgtgc atgaagaatt gcaccatgat cacgagaaca       240
     aaattttaat cattctcgca atagtggcca tacatctggc aattacattg tacagaatgt       300
     ataaagaaaa tagcaagcgt caagctatta aagcagcaag aaccgtggca gacctcagag       360
     aaatctgaga tagtgaatct tttaatgaga tagtgaatcg cagaccctga agtgcagttt       420
     cggttccagc catccagcaa aagatgatag tgatatagtg acaagtgaag aagacaaccg       480
     tacattttta ttctaaaatc ctgaagtgca gttccggttc cagccatcca gcgaaggatg       540
     aaagtgacga gtgaagaaca ccctgaagtg cagtttcggt tccagccatc cagcaaagta       600
     taaaagtgac cagtgaagga gaccctgaac ctgaccctgt gatagcaacg cggcggaatg       660
     aacggacaag cagctgttca actatcggac aaccacaaca aggacccttt ctatgaatat       720
     tgcacgtgag ccctaaacta atcattaaca aatgttagaa ataatcgaag atgacgttca       780
     aacactcgtt aaaattttaa acaaccttaa aaaatcgata tataagagat tccgacccga       840
     aacactagaa gcaaaattaa attattctat aaaacttttt gaagaaattg aaagacaact       900
     aataactaac gaaaaagata tacctagaaa tcatttagac tttctcatca aactttcccg       960
     tgaaacaaac ttccaaatca aagaaattat ttctcgtaaa ttacaagaag agcaatacat      1020
     agaaaaacgt aatacggtaa ccatgtcacc cccatcagag accccatttg acataaaaac      1080
     agcaacatcg ttagtacaga gttacgatgg ttccccggaa ggattagatt cgttcttaga      1140
     ttctgtcagt ctacttcagg atataactcc gcagcagcac attgctactg ctatcaaatt      1200
     cgtcaaaact agattaaatg gtagagcacg atttgcttta tcatctaatc cacaaaatct      1260
     tgcggattta gcgacagcag taaaacaggc ttgcaaaagt ttggaaactc cagaatcttt      1320
     ggtagcaaaa ttaaaatcta caaagaacaa aggagatcaa caaaaattct gtaatgaagt      1380
     agaggccctt actcaaaagc tcacgtcgct gtatattgat agccaaatcc caccaggcca      1440
     agcatctaaa atggcaacca aagcgggagt agacgcatta attaacgctg cacccaacac      1500
     agaaacgaga atcattttaa aagcaaatga tttcgattct atacaaaagg caatacagaa      1560
     agtgaacgag ttacagagtg agcaacctgc ccaagtcttc agtttgttca atagaggacg      1620
     aggacgggga agctataatt accgtcggcc caatgtacag cgaaattatc acaacaacaa      1680
     ctatgaagac cgtaatgtaa gaggaaggaa tagaggttat tcaaaccaac gtggacgttt      1740
     gtggaataat ttccaaggaa gagctatgag tcaaggtaga gccaatctgc tctatgctca      1800
     gacggaaaac gggcaggtcc cccagcaaat aacagttggg ggcaccgaat cgtcacaaac      1860
     acccgaacaa caataaccaa taaccaacca gatgttgtta aaaattgttt caatatcaac      1920
     actagctgta caaatttcat ccaagtgcaa ctaggactct acaaccacaa atgtactcta      1980
     ttagtagaca caggggccga gctttcgctc gtaaaatcca atagtatata tcaattatca      2040
     tctattatca atacagatga aattttatct tttactggaa taaatacgtt accagtaaaa      2100
     accataggat cactttcaac ggaaatagtt cttccaaata acttaacaat aaaacataaa      2160
     ttccaagtca tggattcaac gtttccaatt ccaaccgatg gtatattagg acgtgacttc      2220
     ttgcgtaaat accggtgcac aattaattat gacacttggt tactgtcagg atatttcaac      2280
     tctgataagg tttatattcc aattgaagac aatatcgaag gcaaatttat tctaccacca      2340
     cgatgtgagg taataaagca tgtcgataca gacaaattga cagaagatca tttgctaatc      2400
     tccgacgaga tcgtcccagg agttttttgt gcaaattcta ttatgaacaa tagttgcaaa      2460
     atagtaaaat ttatcaatac aacagaaaat tacgcatttg ttgacaaaaa atttcctaag      2520
     tctctagttc cccttaaaaa ttacgatatc tatacgttcg actcaattaa taaaacaaat      2580
     cgggaggcaa aacttttctc tgaattgaaa ctagatcgca taccgggtga ttaccagcaa      2640
     ggtttgaccg aactatgtgc aaaatacaat gatatttttg cgctaaaagg cgataccctc      2700
     acgcacaata acttttacaa acaggtaata aatttaaatg ataatgtacc gacctacatt      2760
     aaaaactaca gaacccccca ggcacataaa tccgaaatta atcgacaagt agagaaaatg      2820
     ctgaatgata aaataattca accgtcaata tcgccttata attctccaat attgttggtg      2880
     cccaaaaaat caacaaccaa tgaaaaaaaa tggcggttgg ttgtcgactt cagacaacta      2940
     aataaaaaga tttcggcaga caagttccca ttaccaagaa ttgacgacat tttagaccaa      3000
     cttggtagag caaaattttt ttccacgctt gatttaatgt caggttttca tcagattgaa      3060
     attgacacaa aatcaaagaa atatacagca ttttccaccg ataatggtca ttttgaattt      3120
     aaccgattac cctttggact aaatatttcg ccaaatagtt tccaaaggat gatgacaata      3180
     gcactgagtg gactatctcc ggaatgcgca ttcctataca tagatgatat catcgtatta      3240
     ggatgttcaa taagacatca tctaaaaaat ttagaggagg tgttcgtaaa acttcggaag      3300
     tttaatttga aacttaaccc agaaaaatgt aaatttttct gttctgaagt tacatattta      3360
     ggccatcaca tttcacaaaa cggtatccta ccagacaagt ccaaatatag tatcataaaa      3420
     aattttccta caccagaaaa ttccgacgac gtacgaaggt tcgttgcatt ttgcaattac      3480
     tatcgtagat ttataccata tttttctgaa atagctttac cacttaactc cctacaaaaa      3540
     aagaatgcca acttcgtctg gagtaacgaa tgtgaagtag cgtttcgtac acttaaagag      3600
     aaactggttt cgccacaaat tctacaattt cccgacttta acaaaaggtt cgtgttaagc      3660
     acggatgcgt cgaaaaacgc atgtggtgcg gtattatcgc aaccacacgg caatattgac      3720
     ctaccaatcg cgtatgcaag tagaactttt accaatggcg aaagaaataa gtcaactata      3780
     gagcaggaat taatcgcgat tcactgggca ataacatact ttcggccata cttatatggc      3840
     agacggttca cagtaagaac cgatcatcga ccattagtgt acttgttctc aatgaaagat      3900
     ccgtcgtcaa aattgactag gattagaatt gatttggaag aattcgattt tgagatcgaa      3960
     tacgtgaagg gaaaagaaaa tgtcgggcct gacgctctat cacgtattaa tatagactca      4020
     gaaaaacttt caaacatttc cctcctccca gtgcaaacga ggtcaatgac gaaaccaaaa      4080
     ccaagctggg aaaaccagaa gtcgacgcct agcgagattg atcacctcaa ggcgtatgac      4140
     tcgatcaata acattgatgc atttaacatg ccaaaactgg tgtttacaac ccagaacaat      4200
     gacctatacg taaaaataat gacaaaaaat gtgaaaaagg cctttgctca agcgcaattt      4260
     ccttatgcat taaaaagttt tgatttaaaa gaatatgtac gcagcattga cgaaatggcc      4320
     aaaaccctga aaatcaaaca attagcaatg gcaaataaca acattgtttt tgccctgata      4380
     gataaacaat tgttcaaaac aatttgtaat caagtgctta aatttgtcga cataatattg      4440
     tacaccccag cacaaattat aacatgcaaa aaagaaattg acaaaattat agcggaaaac      4500
     cacgataccc cttcgggagg acacgttggt acatcaagac ttcaaaaaaa attgagaagt      4560
     tcttattatt ggcctaatat gaaaacaact attaacaatt atgttaaaaa atgcacacaa      4620
     tgtaaacaaa acaaatacac gcaaaaaact aaagaagcgt ttgttaaaac aacgacacca      4680
     attcaaccat ttgatgtcgt atctattgac accatcggac cgtttacgaa atccgttgat      4740
     ggaaatcgtt atgctttgac tgctcaatgc gaattatcca aattcataat agttgttccc      4800
     attcctgata aacaagcaaa aacattagca aaagcatttg tggaaaactg tatcctgatt      4860
     catggctgtc ctttaaccat caagacagat ctagggacag agtataagaa cgaattattc      4920
     aaagatattt gtaaactcct taatattcaa caaaacttct ccaccgcata ccatccagaa      4980
     acaatgggaa gtcttgaacg gaaccatcgc tgtttaaacg aatatttacg acaatttgtt      5040
     aatgaaacac aagatgattg ggacagttgg ctaccatact acgttttctg ttataacaca      5100
     actccacact ccacacatca gtactcacct tttgagttaa tatttggcaa gccagcaaac      5160
     ataccacaag caatacaaaa ctgcaataac ctagaaccga tttatgacta tgattcatat      5220
     ttcaccgaac tgaaattcaa aatacaatca gcaataatga acactaggat atcactcgaa      5280
     agagctaaag tgacccgcaa taccaaacaa agcgcagaag caaattcgtt aaatctatcc      5340
     aagggcgaca cggtttggat aaaaaaggaa agtagaagaa aactagatag cgtatatgag      5400
     ggaccattcg aggttaccct gatggaatac cctaacgcaa caatcaaaaa taaattgact      5460
     aatgaaatgc aaaaggtgca ttcaaataga ttaataaaat aatataatga atacaaaaaa      5520
     aagggagggg cgagatacca ttaaaaatat aaatatatat attattaggt aaaataggat      5580
     tcaacggttt tttaatattc gtattcgatt ctcctccgat acaactacta tttttcattt      5640
     ctatatttca tgtttctcta gaatataatt atacttatga taagtagcta cgacaacagg      5700
     tttagaaaaa tgtaagagaa aggtgtttgg agatgataac aaaaagacct tttcaaaagg      5760
     gggaagg                                                                5767
//
ID   Gypsy-43_AnFu-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-347
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2855-2855 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 347 BP; 100 A; 86 C; 72 G; 89 T; 0 other;
     tgtaagcaac cttgaacgcg gttgctctaa acgttgacct gcgagctgat cgatggacgc        60
     atcgatcgac tcgttctcac gatagccgca gaccgatcaa gttgccgatg aacaccgaat       120
     tgcaagtcga caattcgcac gctaggtgtt ttgcttgcgt atcgattatt gcaatcaccg       180
     ctgtctccag gcacctcact cagggcgcaa catgacgcta tgttgcgcaa cacttagtta       240
     ggttataaat aagcgaaaac aataaattcg atcatcaatt agaagcctac acttcaacga       300
     ctacgattcg ttatttaata tcacaagcta tatggatggt taccaca                     347
//
ID   Gypsy-43_CQ-I repbase;    DNA;    INV; 9099 BP.
XX
AC   AAWU01034657;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_CQ_;
KW   Gypsy-43_CQ-LTR; Gypsy-43_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-9099
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 465-465 (2011).
XX
DR   Genome; AAWU01034657; Positions   11387   20485.
XX
CC   Positions [3810-4346] - Reverse transcriptase
CC   Positions [5367-5858] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           601..3000
FT                 /product="Gypsy-43_CQ-I_1p"
FT                 /translation="MFKLVPFPRAEDLTIEEIEHELTVRKQPESIFLLDLP
FT                 AKQRKVRSLFKRDQKESLTWPSYTNIREEEEYIHGRIDKLAKALEKKQETR
FT                 FESRVLSYWHRTRRHSARTEAERKIKRELIQKIENLMKQFQFGVPQSPVKK
FT                 QINNILESSRNSTPTTVSNISERSKLTLRTPVPCPITTVAITPTPTILITT
FT                 PSPNLSPLVTSPITTPTLSISVASGSDTPNAVVTPTLTLESPNATTPTSRV
FT                 STPLVQTPNVVPRNPRFEFPTPDRGGEGTVSNSGSSSPTKGKTTDMASGGS
FT                 GQGNGGQAGDDKFMTEWKNMKALLVDLVDKNAELRTEIQEQKKALQAKGSQ
FT                 GPVKMKTGATQKDVSSKGAIPKRGEGSTSTSSGIPQEEWEAMKEILRTIML
FT                 QQSSASANNNNVPPRNNPQPGRGSGNPRQSPPPYPPSYEGDYSDSSSSRGG
FT                 ARGGHRYRDQPGRVDGRIDKWKIRFSGDSNVSVENFLYKAKKLAEREEIPP
FT                 WELLRNIHKLLEGTAEDWFFTYADDFDCWRTFECKFTHRFGNPNKDQGIRS
FT                 TMKYRKQQRGEAFKAFVDEIVRLNRLLTNPLPQDRLYETIWDNMRDHYKTK
FT                 IAVVGVGDLDQLLEINHRIDAADSSIKQQADGSGEFSNQRHVNHVEVDEYG
FT                 SEEDGASVNAIRGQQSSYRPPCSSASQDQQRSTSAYRNPYRSRPQQQPREQ
FT                 AHHQQQPQDQLQQQPQHLINQTRQADATQAANPLPVETSGATAQLLCWNCL
FT                 VHGHSWRQCNKPKVIFCYGCGCLGRTITNCDRCSVTSTQRSSATPQGNE"
FT   CDS           3414..6260
FT                 /product="Gypsy-43_CQ-I_3p"
FT                 /translation="MIDLGQGPESVEMVEQDDDALLCFTIEPSETTPTLED
FT                 PEEDDTLDIPVYEGPTESVPDPDAIETEHVLTTEQRRQLSEVIRAFELTST
FT                 GKLGRTHLIEHEIVLKEGAKPRNPPMYRCSPYVQQAINAEVERFKKLDAIE
FT                 ECYSEWTNPLVPVPKKNGKVRVCLDSRKINKLTVKDSYPMRNMQDIFRRLG
FT                 KATYFSVIDLKDAYFQIPLKEECRNLTAFRTSEGVFRFKVLPFGLMNAPFT
FT                 MSRLMAKASGSDLEPNVFVYLDDIVIAASSFDEHLRLLRLVAERLRKAGLT
FT                 ISLEKSRFFRKQVMYLGYLLNEHGVAIDKSRIQPILDYAQPRTQEDIRRLM
FT                 GLAGFYQRFIKDYSRMTAPITDLLTKENKRFTWTKEAEDGFRELKAVLTSA
FT                 PILGNPDFSKLFTIESDASDRAVGAALVQEQDGVTRVISYFSKKLNRTQRR
FT                 YSAVEKECLGVLSAIQHFRHYVEGTKFRVITDARSLLWLFNVGAETGNAKL
FT                 LRWALRIQAYDFDLEYRKGKANITADCLSRSIEVDAVRVTLPDDEYEEQIE
FT                 NITGNPTKFSDYRVIDGRIFRYVKSPNRQTDPRFSWKLLPPRAERKEIITK
FT                 VHDQAHFGFEKTLASLKERHDWPKMREEVRKHCRECLQCQVSKAGNQNVTP
FT                 PMGPQKPVQYPWQFITLDYVGPLPASGKNRNTCLLVVTDVFSKFVLVQPFR
FT                 EAKAHSLTEFVENNVFRLFGVPEIVLTDNGTQFLSKQFKTLLEAYHVQHWL
FT                 TPAYHPQVNNTERVNRVITTAIRATLKKDHKHWADNLQDIADAIRNAVHDS
FT                 THYSPYFVVFGRNKVSDGREYSWIRDNYEPSDDDKDVPEQKKKLFEEIKKN
FT                 LTAAYQRHAKTYNLRTNANCPKYTVGEKVLKQTFDLSDKGKGFCKKLAPKY
FT                 EPAVVRKVLGKNTYELEDLDGKRFGVYFTNRLKKWHTPQPGASGS"
XX
SQ   Sequence 9099 BP; 2457 A; 2180 C; 2261 G; 2201 T; 0 other;
     gaactccctg tcccgaaacg ggattactga acccccctcg agaggtctct acggctgggc        60
     aaaccgacaa acaggtggat ggtctccttc gggagtggcg cttaagccat ctcacttaac       120
     cataggggag ttcgataggc tggcgggcta taactggcgc ccaacaatac aaggcatcta       180
     ctgtactcta ttttttattt gatttttttt ttcttggatc gttttactaa attttctgaa       240
     atttacggat tttgggaatt atttttttgg cttgattttt ttggtttgat ttgaattggt       300
     tttttttgta gtattagatt cttttgttct gaaggaagag ttgagtttct cggagaaatt       360
     gcaaacacta ttttgggttg tttttcattt gcatacattt attgtattta ctttctattt       420
     tttcttttca tcatacatta tttatattat catatttttt tttcattgct acaatttttg       480
     taattttggt actacgattt gtattattta aggagcctac tctgcagttt tgttgttata       540
     gcaaactaat ttagcgagct ataaaattcg gaatttcgta attgaaccta attgcactag       600
     atgttcaaat tggtaccgtt tcctcgtgcg gaggacctta cgatcgaaga gatcgagcac       660
     gaactcacgg ttcgcaaaca accggaatca attttcctac tcgatctacc ggcaaaacaa       720
     aggaaggtac gaagcttatt caaaagggat caaaaggaga gcttgacgtg gccgtcgtac       780
     acaaacattc gggaagagga agagtacatc catggtagaa ttgacaaatt ggccaaagca       840
     ctcgaaaaaa agcaagagac caggtttgaa tcgcgcgttt taagctattg gcaccggacc       900
     agacgacatt cggcgcgtac ggaagcggag aggaagatca agcgcgaact gattcaaaag       960
     attgagaatc ttatgaaaca gttccagttt ggggtacctc agtcgccagt caagaaacaa      1020
     atcaacaata tcttggaatc atctcgtaac tcaactccca caactgtgtc caatatttcc      1080
     gaacgttcga aactcacgtt gagaacccct gtaccttgcc ctatcacaac tgtagcgatt      1140
     accccgacgc ccacaatttt gatcacgacg cctagtccaa atttatcacc attagtgact      1200
     tctccaatca cgaccccaac tttgtcgatt tctgtcgcca gcggatcgga tacgccgaac      1260
     gccgtcgtga cacccacact cacgcttgag agtccaaacg caactacgcc tacatcgcga      1320
     gtatcaacgc cgttggtgca gaccccaaac gtagttccgc ggaacccgag gtttgaattt      1380
     cccacaccag accggggtgg tgaaggtacg gtcagcaata gcggttcgag ttctccaacg      1440
     aaaggaaaaa cgacagacat ggcttcagga ggttcaggtc agggcaacgg aggacaggct      1500
     ggagatgaca agttcatgac ggagtggaaa aatatgaagg cgttgcttgt ggacttggtg      1560
     gacaaaaacg cagagctaag aacggaaata caagaacaaa agaaggcgtt acaggcgaaa      1620
     ggaagtcagg gaccagtcaa aatgaagacg ggcgcaaccc aaaaggacgt cagctcgaag      1680
     ggagcgatac cgaagagagg agagggatca acgtcgactt catccggcat tccgcaagag      1740
     gaatgggaag ccatgaagga gatactgcgg acgatcatgc tgcaacagag ctcagcatca      1800
     gcaaacaaca acaacgtacc tcctaggaac aatcctcagc caggccgagg aagcggaaat      1860
     ccacgccaat ctccaccgcc gtacccaccg agttacgagg gcgactacag cgactcatct      1920
     agctcgagag gaggtgctcg aggaggccat cggtatcgag atcaaccagg acgagtcgac      1980
     gggcgaatcg acaaatggaa gatccgattc tcaggcgatt ccaatgtatc cgtggagaat      2040
     tttctttaca aggcgaagaa actagcggaa cgggaagaaa ttccgccgtg ggagctactc      2100
     cggaacattc acaagctgct tgaaggaacc gccgaagact ggtttttcac ttacgcggac      2160
     gatttcgact gttggcgaac gttcgagtgc aagttcacgc accggttcgg caatcccaac      2220
     aaggaccagg gaatccgatc aaccatgaaa taccggaagc agcaacgggg agaggcgttc      2280
     aaagcatttg tagatgagat cgtgaggttg aaccggctgc tgacaaaccc gttaccgcag      2340
     gacaggctgt acgagaccat ctgggacaac atgagggatc actacaagac aaagattgcc      2400
     gtagttgggg taggagactt ggaccaactg ttggaaatca accaccggat cgacgcagcg      2460
     gacagctcga tcaagcagca agcagacggc tcaggcgagt tttccaatca gcgccacgtg      2520
     aatcacgtgg aagttgatga gtatggaagc gaagaggacg gagcatcggt caacgccatc      2580
     agaggtcaac agagcagcta caggccgccg tgcagttcgg cgagtcagga ccagcaacga      2640
     tcgacaagtg cgtaccgtaa tccgtaccga tcgagaccgc agcagcaacc cagagaacaa      2700
     gcacatcacc aacaacaacc tcaagatcaa ctacaacaac aaccgcagca tttgatcaat      2760
     caaacgcgac aggcagacgc gactcaagcg gcgaacccac ttccggtaga gaccagcgga      2820
     gccacagctc aacttttgtg ctggaactgc ttggttcacg ggcacagctg gcgccaatgc      2880
     aacaaaccga aagtgatttt ctgctacggg tgcggctgtt tgggaagaac gatcacaaat      2940
     tgtgatcggt gttcggtgac gtctacccaa cgttcctcgg ctacgccgca gggaaacgag      3000
     tagaggggtg cgagttgggg aattcgacca ccgacctgag accaaacatt cccacttcaa      3060
     atctcgttta cgaccctttt gcgcaagtat accaagtccg aatacaggcc aacaaatgtc      3120
     cgcacatccg agtcaacatc ttcgacacgc aggtcgacgc gcttttagac tctggagcgg      3180
     gaatcagcat tctgaactcg ctggacatca tcgatcagta ccgcttgaag attcaaccgg      3240
     cggccatccg agtatcgacc gcggacggat cgaactacgg ctgcttggga tttgtaaatt      3300
     tgccgtttac gttcaagaac acgacgcgag tgattccaac cattgtcgtc ccggagatct      3360
     ctcggaaact aatactcgga gccgatttct gggaggcgtt cgggatcaag ccgatgatcg      3420
     acctcggtca aggaccagaa agcgtcgaga tggtcgagca ggacgacgac gcacttctct      3480
     gtttcacgat cgagccttcg gagacaacgc caacgttgga agaccccgag gaggacgaca      3540
     cgctggacat tccggtgtac gaagggccga ccgagtccgt tccggatcca gatgcgatcg      3600
     agaccgagca cgtcctgacg accgaacaac gccgacaact gtccgaagtc attcgtgcgt      3660
     tcgagttgac gtcgaccggg aagttaggac gcacacacct catcgaacac gagattgtgc      3720
     tgaaggaagg agcaaaaccg aggaacccgc ccatgtaccg ctgttcaccg tacgttcagc      3780
     aagcgatcaa cgccgaggtg gaacggttca agaagctgga cgcgatcgag gaatgctaca      3840
     gcgaatggac caacccgctt gttccggtgc cgaaaaagaa cgggaaagtt cgagtctgtc      3900
     tcgattcgcg aaagatcaac aagttgacgg tcaaggatag ctacccaatg cggaacatgc      3960
     aagatatatt ccgacggttg ggcaaggcta cgtacttttc cgtcatagac ttgaaagacg      4020
     cctactttca aatacctttg aaagaggaat gtcgtaattt gaccgctttt cgaacttcag      4080
     agggagtctt ccggttcaaa gtccttccgt tcgggctgat gaatgcgccg ttcacgatgt      4140
     cccgactgat ggccaaggca agtggttcag acctagagcc taacgtcttc gtctatctgg      4200
     acgacatcgt gatcgcggcg agttccttcg acgagcacct gcggttgctt cgactggtgg      4260
     cggaacgact tcgaaaggcc gggttgacta tctcgctcga gaaatctcgt ttcttccgca      4320
     agcaggtcat gtacttgggg tacctcctca acgagcacgg agtggccatc gacaaaagcc      4380
     ggattcaacc gatcctcgac tacgcacagc cgcggacgca ggaggacatc cgaaggttaa      4440
     tgggcctcgc cgggttctac caacggttca tcaaggacta cagtagaatg acggcgccga      4500
     tcaccgactt gttgaccaaa gagaacaaac gcttcacgtg gactaaagag gcagaagacg      4560
     ggtttcggga gctcaaagca gtcctgacct ccgcgccgat cttgggaaac cctgacttct      4620
     cgaagctgtt caccatcgag tcggacgcgt cagaccgagc ggtaggagcg gcgctggtcc      4680
     aagagcaaga cggcgtcacg cgcgtcatca gctacttcag caagaagctc aaccgaacac      4740
     agcggcgata ttcagcagta gaaaaggagt gcctcggcgt attgtcggcc atacaacact      4800
     tccgacatta cgtagaagga accaaattcc gggtcatcac cgatgccaga agcttgctct      4860
     ggttgttcaa cgtcggcgca gagacgggca acgcgaagct attgagatgg gcgttgagga      4920
     ttcaagccta cgacttcgac ctcgagtacc ggaaagggaa agcgaacatc acggccgact      4980
     gcctgtcacg ctcgatcgaa gtggacgccg ttcgcgtcac gcttccggac gacgagtacg      5040
     aagagcagat cgagaacatc actgggaacc caacgaagtt cagtgactat cgggtgatcg      5100
     acggacggat cttccgctac gtgaagtcgc ctaaccgcca gaccgatcca cggtttagct      5160
     ggaagctact gccgccgcga gccgaacgca aggagattat cacgaaggtt cacgaccaag      5220
     ctcacttcgg tttcgaaaag acgctggcat cactgaagga gcgacacgac tggccgaaaa      5280
     tgcgtgaaga agttcggaag cactgccgcg aatgcctaca gtgccaggtg agcaaagccg      5340
     gcaaccagaa cgtcacgccg cccatgggac cacaaaaacc ggtccaatac ccgtggcagt      5400
     tcatcacgct cgactacgtc ggtccgctac ccgcctcggg caagaacagg aacacatgcc      5460
     tgctcgtcgt gaccgatgtg ttcagcaagt ttgttctcgt gcaaccgttc cgcgaggcga      5520
     aagcacactc gctcacagag tttgtcgaaa acaacgtgtt tcgtctgttc ggagtcccgg      5580
     agatagtcct gacggacaac ggaactcagt ttttatccaa gcagttcaaa acccttctcg      5640
     aggcgtacca cgtccagcac tggctgaccc cggcgtacca ccctcaggtg aacaacaccg      5700
     agcgggtaaa ccgggtgatc accacggcca tcagggcgac gttgaagaaa gaccacaaac      5760
     attgggccga caaccttcag gacatcgcgg acgccatccg taacgctgta cacgattcga      5820
     cacactacag tccatacttc gtggtcttcg gccggaacaa agtgtccgac ggccgggagt      5880
     acagctggat cagagacaat tacgagccga gcgacgacga caaggacgtt ccagagcaga      5940
     agaagaagct gttcgaagag atcaaaaaga acctgaccgc cgcctaccag agacacgcca      6000
     agacgtacaa cctccgtacg aacgccaact gtcccaagta caccgtgggg gagaaagtac      6060
     tgaagcagac ctttgacctg tccgacaagg ggaaaggctt ctgcaagaag ctcgcgccga      6120
     agtacgaacc tgcggtcgtg cgaaaggtgc tgggaaagaa cacgtacgag ctggaggatc      6180
     tggacggaaa acgctttggg gtctacttta ccaatcggct gaaaaagtgg cacacacctc      6240
     agccaggggc aagcggatcg taatgagatc ttttcgaaga gcaaattgtt ttttttagct      6300
     atgtccctcc taatcccacc aggagcaacc atttccgttt agggaacaaa acaccctcgg      6360
     ggtaattacc tcattagggc actcgacgga ctcgtgttag ggaaaaccag aataaacaaa      6420
     ccagcactga gggtaccgag ttgtaccacg cgcgatcgcg acttgggaga atcggttcga      6480
     tctggggtga tttgtcagtt gcgttccaaa cttaagtacg ggaagatgaa gcaaagaagg      6540
     agcaacttag ttgccatgac ttccaaaacg cccgatgact gtcgagagcc agtagtcact      6600
     tgtactaaga ttgcacgaag ctatgaacga gcaagtgatg acctgtgtta gtagccaccg      6660
     aaaggtgtga acgaagaaag cgagcctgcg atgacttcga cagcgatcga tgattgtcga      6720
     aagctagtag tgcatctttg gacaacgccc acaaatcatc tcatgatcga ttccgacgat      6780
     ccaattgtag acgatttaga acccaacgag ctatgaatag acttcaaccg aagaagtgac      6840
     caagggtaga accggttcta ccacgcgaaa ataccaaatt ttgggccgag tagacaccac      6900
     aaaccaagac tagcctgacc gagtcacagc tagcacgcgt aaaacgaaga agaggaagaa      6960
     gatacgcaaa accgaacgcg acgcgaagaa gttagtggtt agtagggcct aacgcctaac      7020
     ccttaaacta agttagtact aaactaggtt aatcttagat ctataaaaaa ctcacgatcc      7080
     gctagtccag ttgggggtgg atcatccttc cttccgtcga gtgtgggtgg agtccaaact      7140
     tccgtcagtc ggggcgagtc atccttccgg cgaagtgggg tgagggtggc cgaacatcgt      7200
     cagctggccg agcaagatcg tcgtcacctg tttgcgtggg aggacgacat tgtaatatga      7260
     tcactttcat tattagtttt cttcttatac ttacctgaat tgttgtttat ttttctacga      7320
     tggagacgtt ttttcccgtt ttttttgcct cgttttccga tgattaacga tctttttcta      7380
     atgtaaatag tagttatagt tttacccccc ttgtaaatag tagtttaagt tatagttagt      7440
     aaacaatcga aacacagctg gcgtttcgct ggtttgttta cattcggttt ccaaatatag      7500
     tagttttttt ttttttggca ccatagtttt tttttcccaa agtagatttt ccacaccaat      7560
     ttttgcacag attttcccac ccagttttcc attttttgat aatttttccc aagtagtttc      7620
     agtttgattg attagccaca atttccgcag tttttttccc ccgagagctt atcaatcgct      7680
     aacgacaggt cgcgatttcc acgccgcagt agccatgccg ctgcgctgaa aataaacaaa      7740
     caaaaaacca acttaaaacc gatagctgga acgatatctc agctcgactt tcctcgtttc      7800
     cgttggggac ggttcttccg accatcccag tcgtcttttc tggccatttc actttttttt      7860
     ttttcaccaa actttttcct ccaaaaactt tcactcgcgg ttcaaaactt gcgcctggca      7920
     ttttttccac tttcgctttc tcacatgttt actccgttga cagttcgatg acgtttgttt      7980
     tgtttgtgtg cgtagcaccg gtaaaatgcg cagggtgaat gaggtgacag atccagatct      8040
     tggagatgga ttctgcatgg gtgatttttt cttgaatgcg aggggtgagc gaatgttttt      8100
     tttgtagttt gtaattatgt gttgattctt caagaatttc gttatcggat tgatcctggt      8160
     gttagaagtt cttgtgagga ggaatatttt gcgttccaaa tcataatgag tgttaaatcg      8220
     cggaaatata tttccgtggc ggcgaattat gaggagaaac agaccccttt tctgtcagtg      8280
     aagtttgttc ccacagactc gtcttagtat tgggccggga ttgcaaacta aactgactag      8340
     ttcttttcgt gaacgttgtc ttcgcctatc ggctttgtcc tggtgtagaa gacacgtttc      8400
     gtctactgtg ctagctcgcg tagggttatg cgcaaactct atgtcgatgc tatatttttt      8460
     ttccgtagtt tgttttcatg ttttaatttt gtaattttga gtatgaatga gtcgtcgtca      8520
     tcaatgaact gatcagtaat tttctgggtt acaaatttct ttattgcctc ttctccttat      8580
     ttttttttct caatatttca ttagaattag ttgtacatat ttatacattc atcataaatt      8640
     tctttattaa aggtcatttt ttttttcatg aatatttttt ttcaaaagcc tttgccgtat      8700
     ttgagccggt tgattagagt taggaacatt tgtaaattga attttttttt ttggaattac      8760
     tcgttttttt ttgcatttct cgaggcttta ctgttgttag tgatgatttg agtagtaatt      8820
     cgctggagac cggagacttt agtcattgat ggttagtagc agacttacaa catcgtcgct      8880
     gacactgtga tgttgtctga tctggaaagt gagacggagc tgactgttag caaggaccta      8940
     acttgttagt gagttgacag ttcagtgatg aacgtatatg accccgaaga gaaacccaat      9000
     catcagtagc acttctgttt ggcctacgaa aatttgtttg gtcgtttttc accgccgtgt      9060
     taacaccaaa caaattttcg tacttttagt ggggaatga                             9099
//
ID   Gypsy-43_CQ-LTR repbase;    DNA;    INV; 1997 BP.
XX
AC   AAWU01034657;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_CQ_;
KW   Gypsy-43_CQ-I; Gypsy-43_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1997
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 466-466 (2011).
XX
DR   Genome; AAWU01034657; Positions    9390   11386.
XX
SQ   Sequence 1997 BP; 517 A; 528 C; 508 G; 444 T; 0 other;
     tgtaacgagt acatagggag taaaagtaca gtcggtatga ttgggaagta gaaataccta        60
     aactgtatta aacgtacacg ccgcagagta gagctttctt gctgagtgac ctttgctcat       120
     tcctttggtc actcaaatgc cgagtacctt ttgcgccagt tatcccaaaa gctttccgtt       180
     caaccagatg gccgagtggt ttaaactctg ctctttaggt gagccagcac aggagatcgg       240
     ggagagccag ccgcacgaat ctcgcgaaga gtttcgcgtt ttcgcggttc gggggtgatg       300
     agatcgtgga ggtgataaag cggtctaggg gaatgacaag ctattgtcca gggttggtaa       360
     ccgtgagagg gaacggaatt cggaactgaa gcctctcata agtctcggcg ttctgatgac       420
     gcgcccaacg gttcactttt atcagttccg cggaagaggc accggtggcc ctcgattgtg       480
     cgcgtctcgt gattaaattg taggttctag ctttccatga gtttgtcttt ttaggttatc       540
     tctagtgtaa tgtgtttctc tgtcctttcc ctgttagcta gtttagcgag attagtagat       600
     tgtgctagtg ccgtgtcgtg tgcgtgtgtg taagcctgcg tgcatgtgcg ttccagaatt       660
     cctggtaagt ccggaacccg accacctcgt ggcttaacgt gcgctaaccc gtgattccgt       720
     gtcccgtgcc agttctgcga caccgccacg ctcgccaaag acggccacga tctaccgggg       780
     accagttacc gcttcgatcc ggccgcaacg cccacgccgc cgaaggccag cgctcgccaa       840
     actgcgctag gcagcggaac tgtacggcca cgccgtaaca ggacagcagc aaccgtcacc       900
     gcagcgtcct tgaataaccg ccatcgcgat cagcatccgc catcgcgatc gccaaccgcc       960
     atcaacctaa cctggaaggt taggaaagca cgtgagtgag tgaagaggga gagaagtccg      1020
     gcctcgaagg cggacacgcg aaccggcaac caacaaccag ctaaccagcg ttccagccga      1080
     gcagcagcag cagatcttca aaagtaggtc gtcgaggttc cctcgcaggt gcgaccaacc      1140
     acgtgctcga gtcccgtccg gttctaaccg gagagcagca acagcagcag cagcaagtga      1200
     tgacgtcgta gacgccgtcc gcagcgaaac accaaccacc aaaccaccga gtttcttcga      1260
     aaccgtcgat cagcagcagc agaacaggta tcgagacgac cacgtgatcg tcgaccgcga      1320
     acaccaagca aaccgtgagt aaagcatgct ttaagtgata agtccatggc acacttttcg      1380
     cccgctacca accttaccaa ctagtagcgc ggcgccgcgt ctgtcgagac tgttccgact      1440
     cgcctaaaat gaacacataa aacgcacata gcacacacac ctaaaccgga agaagaagag      1500
     agaagaagga agacaaacac acggtagaat ctgaactgaa gtaacaggat ctcagggaaa      1560
     ggaagagggg aggatcgccg gcaaacacaa acgtacgtac gaaaacatga atgactcact      1620
     gtaaataaac gaacacaaaa cactacaaat gtttttcctg ctgcacttaa cctaaacaca      1680
     cagtagctat aaaacactta tgctagggtg accgaaagag tcgactcatg ttttggtcgc      1740
     gaccgtttaa ataaatgtag attttctttc aatattctat tttactttat ttttctactg      1800
     gagacagggc tccgaatccc ttggaccatt ggctattttt cttgcagatc tggttcaggt      1860
     agactgttga aggccgcagg tgatgaatca cgccctgagg tctccagtcc gtttccggtt      1920
     tctttttcag ctacccttcc tgggtagtgg cttggtacgc tagtcggagt acctccgacg      1980
     cgttttacac ccccaca                                                     1997
//
ID   Gypsy-43_DEl-I repbase;    DNA;    INV; 4654 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4654
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 483-483 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(358..1113,903..2558,2422..4302)
FT                 /product="Gypsy-43_DEl-I_1p"
FT                 /note="retropepsin, reverse trnascriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSERAKKQEPSKIPVVKGRQPYYTRSVAAAVKNLRMT
FT                 APNNEKQKLEEASGGQNFGAMATESCSIAENTRTLKDLVQLLALKMGIDEQ
FT                 NNTSSSITAESFAKIIPEFDGESIPVKHWFDNFELNAEAYGLNIKQMYVQA
FT                 RAKMTNTAKLFLDSTHVHQYTEMRLLLETEFSRQYVCSADLHEQLRTRKKR
FT                 KQESFHEYLLQMRKIAALGSIDARSVIRYIVDGLNLRSDFKYTLIIANLLE
FT                 SCRNSMRFLSAAAPYSEKTQAGIFSRVSFADEEDCSTWQHRCTFCNTLHCG
FT                 WPKSEERLQIHSYNCKSFRELQEQYEVFERVAEKGNKPFPSNDSSWTPNQK
FT                 KQHEFNDKKSHCFNCGSADHFRKDCKAATKCFRCNKEGHMSKNCPGLAAGV
FT                 QVVRSANRMKKVTLNGVEVECLVDTGADVSVLRKFIFNKIPNVILEKSESK
FT                 LRGLGKKITCPIGRFFADVAVDEVTTSQSFVVIDDEDIEYDALLGYDFVSK
FT                 FNLSLSAEGYKFSSLQGEKACEEPNQMSIYNIINTNDEIDVPSQYAKEVSM
FT                 LIKNYKAADLVAEVPVKLRIVPDGEIIPFRQSPSRFAIAEEKDVEKQIDEW
FT                 LAAGIIRPSTSNFSSRLVLVTKKDGTRRICVDFRKLNSMVLRDCFPVPVID
FT                 DVLEKLQKARYFTVMDLENGFFHVAIEEDSKKYTAFITKSGLYEFNRTPFG
FT                 FRNSPAVFIRYVNHVFQELMNKDVLDLYMDDIIIHAETAEHCLEKMALVFK
FT                 TAGAFGLKIKWRKCHFLQIFGAEECQSSPSFPGVDWIFQEICLELFPDCST
FT                 INRSSGENVTSCKFSVPKNVRAVQAFLGLTGFFRKFVLNYSQIARPLTDLL
FT                 RKDVRFQMAEPQMNAFQSLKDALTKEPVLKLYIRGAKTELHTDASKDGFAA
FT                 VLMQWSDGRLHPIQYWSKKTTEAESRQHSYILEAKAVYLAVKKFRHYLLGS
FT                 PFRLITDCVAFKQTLQKADVPRAVTQWIIYLQDFEFAVEHRPGERLKHVDC
FT                 LSRYPNRVMLVSLEITARIKNAQGKDEMLKAIMEILASRPYEGYKMKGGLV
FT                 YKEINGNDLLVVPKVMEKDVIVDAHNSGHFALQKTVHAVQQSYWIPHLEQK
FT                 VQQVVSNCVRCIIFNKKLGKREGLLNCIDKGDQPLHTLHVDHLGPMDATGK
FT                 QYKYIFAMVDSFTKFIWLFPTKTTSCEETLKKLEIWSEIFGNPVRIVSDRG
FT                 SAFTANLFAEHMKESGIDHVWSTTGVPRGNGQIERVNRTILSIISKISAED
FT                 PAKWFKAVPLAQRAVNSHVHASTKKSPFELMFGVKMNNKPSDRIIQLLEEE
FT                 LYLYFDENRQQLRQEAKANIQRAQDSYKKNFDLKRKPEVIYQVGDLVAIRR
FT                 TQFIAGKKLAGEYLGPYEVSKVKRNGRYDVRKAADVEGPSNTSTSCDHMKM
FT                 WRYVKVNEDAWSSGTDD"
XX
SQ   Sequence 4654 BP; 1484 A; 898 C; 1142 G; 1129 T; 1 other;
     gcaggataag cagtacatca gccgaaaagc agaaagcagt agagcagaaa gcagcagcag        60
     aaatgtatag aacgcgttat ggattatttt gatgatcgaa gaatgggcag ttctagaagg       120
     aggaactcag cagaagcaga ggcagaagca gagagacaga gaaaaagtga cgccgtagga       180
     aaaacagtca aatattttgt atctttctat actaacttta tataataata ataaaaagca       240
     agttgagatt aaccttctca actcacattt ggggggctcg tcctagtcta gaaagtgcaa       300
     gtgactacgc cgtcccgagg tgtctcagat aaaataaaac gcgagctacg aacgccgatg       360
     agtgagaggg caaaaaagca ggagccttct aagataccag ttgtaaaagg gagacagccg       420
     tactacacaa ggtcagttgc cgcagcagta aaaaatctta gaatgactgc tccgaacaac       480
     gagaagcaga aacttgaaga agcaagtggt ggtcagaatt tcggagctat ggctactgaa       540
     agctgttcga tcgccgagaa tacaaggacc ctgaaggatc ttgtccagct cctcgcctta       600
     aaaatgggaa tcgacgagca gaacaatacc agtagctcaa ttactgcgga aagctttgca       660
     aaaatcattc ctgagtttga cggtgaatcc ataccggtca agcattggtt tgacaatttt       720
     gagctgaatg ctgaagctta cggtctgaac ataaagcaaa tgtatgtaca ggctcgtgcc       780
     aagatgacga atacagcaaa attgtttttg gattctactc acgtacacca atacaccgag       840
     atgcgccttt tgctggagac ggagtttagt cgtcaatacg tgtgcagcgc ggatcttcat       900
     gagcagctcc gtactcggaa aaaacgcaag caggaatctt ttcacgagta tcttttgcag       960
     atgaggaaga ttgcagcact tggcagcata gatgcacgtt ctgtaatacg ctacattgtg      1020
     gatggcctaa atctgaggag cgacttcaaa tacactctta taattgcaaa tcttttagag      1080
     agctgcagga acagtatgag gtttttgagc gcgtagccga aaagggaaat aagccgtttc      1140
     cgtcgaacga cagtagttgg accccaaacc agaagaagca gcacgaattt aacgacaaaa      1200
     agagtcattg ctttaactgt ggatctgccg atcattttcg caaggattgc aaggccgcca      1260
     cgaaatgttt tagatgcaac aaagagggtc atatgtctaa aaattgccct ggattagctg      1320
     ctggtgtcca agttgtgcgc agtgcgaatc gcatgaagaa ggtcaccctt aacggcgtcg      1380
     aagtggaatg cctggtagat accggagccg atgtatccgt gttgagaaag ttcatcttca      1440
     acaaaattcc taatgttatc ttggagaaaa gtgaatcgaa gctgcgtggt ctgggaaaga      1500
     agatcacatg cccaattgga cgtttttttg ccgatgtcgc ggtagacgaa gtgacgactt      1560
     cacaaagctt cgttgtcata gacgatgaag acattgaata tgatgcgctg ctcggatatg      1620
     atttcgtctc taagttcaac ctgtcattgt ctgcggaagg atacaagttt tcttccctgc      1680
     aaggggagaa agcttgtgag gaaccaaatc agatgagtat ttacaatata attaatacaa      1740
     atgacgaaat cgatgttcct tcccagtacg caaaggaagt gtctatgctg ataaaaaact      1800
     acaaggcagc ggatttggta gcagaggttc cagttaagct gcgaatcgtt ccagacggcg      1860
     agatcatccc atttcgtcag tccccgagtc gattcgccat tgccgaagaa aaggatgtcg      1920
     agaagcagat cgacgaatgg ttagctgctg gaattatacg cccatctaca tcaaactttt      1980
     ctagtcgcct ggtgctggta accaaaaagg atggcacgcg tcgtatatgc gttgattttc      2040
     gtaaactgaa ttcgatggtg ctgagggact gctttcccgt tccggtaatc gacgacgtgc      2100
     tggaaaagct gcaaaaagcg agatatttta cagtgatgga cttggagaat ggcttcttcc      2160
     acgttgctat agaagaggac agcaagaaat acacagcatt tatcaccaaa tcaggactct      2220
     acgaattcaa tagaacccct tttggattta ggaactcgcc ggctgttttt attcgctatg      2280
     taaaccacgt atttcaagag ctgatgaaca aggatgttct tgatttatat atggatgata      2340
     taataattca cgccgaaact gcagaacatt gtttggaaaa gatggcactc gtttttaaaa      2400
     cagctggagc gtttggctta aagatcaagt ggcgaaaatg tcacttcttg caaattttcg      2460
     gtgccgaaga atgtcagagc agtccaagct ttcctggggt tgactggatt tttcaggaaa      2520
     tttgtcttga actattccca gattgctcga ccattaactg acctgctgcg aaaagatgtt      2580
     cgttttcaaa tggctgagcc tcagatgaat gcatttcaga gtttgaagga tgcgctgaca      2640
     aaggagccgg ttttgaaatt gtatatcaga ggagcaaaaa ctgagttaca cacggatgca      2700
     tcaaaagacg gatttgcagc agtgttaatg cagtggtcgg atggcagact ccacccaatc      2760
     cagtattgga gcaaaaagac aaccgaagct gagtctcgcc agcacagtta catcctagaa      2820
     gcaaaagccg tatatctagc ggtaaagaaa ttcagacact atttgctggg atcgccgttt      2880
     aggttgataa cagattgcgt cgcattcaag caaaccctac agaaggcgga tgtgccaaga      2940
     gcagtgacgc agtggataat ttatctgcag gactttgagt ttgcagttga acaccgtcca      3000
     ggcgaacgac ttaagcacgt tgactgtctt agtcgttatc ccaatcgtgt tatgctggtg      3060
     tctttagaaa tcacagctcg aattaaaaat gctcaaggta aagacgaaat gctgaaggca      3120
     ataatggaaa ttctcgccag ccgtccttat gagggataca agatgaaagg tggacttgtc      3180
     tataaggaga taaacggcaa tgatttactt gtagtcccaa aagtgatgga aaaagatgtt      3240
     attgtagacg cccacaattc aggtcacttt gctcttcaaa aaactgtaca tgctgttcaa      3300
     caatcctatt ggattcctca tctggagcaa aaggttcagc aggttgtaag caactgcgta      3360
     agatgcataa tttttaacaa gaaactcggc aaaagagaag gacttttaaa ctgtattgac      3420
     aaaggtgatc agccgcttca tacgctgcac gttgatcatt tgggtcccat ggatgcgact      3480
     ggaaagcaat ataaatacat atttgcaatg gtggactcat tcacgaagtt tatatggctt      3540
     tttcctacaa agaccacaag ctgcgaggaa acactgaaga agctcgaaat ttggtccgaa      3600
     atttttggca acccagtgcg tattgtttcc gacagaggct ccgccttcac agccaacttg      3660
     tttgcagagc acatgaagga aagcggtatt gatcacgttt ggagcacaac cggagttccc      3720
     agaggaaatg ggcagataga aagggtaaat cgcacaattt tatcgataat ctccaagatt      3780
     tcggcagagg atccagccaa gtggtttaag gcagtaccac tggcgcagcg agcagtaaat      3840
     tctcacgtgc atgcatcaac aaagaagtca ccattcgagt taatgtttgg cgtgaagatg      3900
     aacaataagc ccagcgatcg tataatacag cttttagagg aggagttata tttatacttt      3960
     gatgagaacc ggcagcaact caggcaagag gcaaaggcca atattcagcg ggcacaggat      4020
     tcatacaaga agaattttga tctgaagcgg aaaccagaag taatttatca agttggagac      4080
     ttagttgcta tacgccggac acagttcatc gcaggaaaga aactggctgg agaatacttg      4140
     ggcccgtatg aagtttctaa agtgaagaga aatgggcgat acgatgttcg gaaggcagct      4200
     gatgtagaag gcccatccaa cacttcaacc agttgtgacc acatgaagat gtggcgttac      4260
     gtgaaggtta acgaggatgc ttggtcatct gggacagatg attaatcagg aatggccgaa      4320
     tgtaagattg tgaagtaaca taagcggaga agcagcagga taaagtatat cagcagagaa      4380
     gcagcaggat aagcagtaca tcagccgaaa agcagaaagc agtagagcag taaagcagca      4440
     gcagaaawgt atagaacgcg ttatggatta ttttgatgat cgaagaatgg gcagttctag      4500
     aaggaggaat tcagcagaag cagggggcga gagaaaaagt gacgccgtag gaaaaaagcc      4560
     gaaaaagcga cagtcaaaca ttttgtatct ttccatactt actttacata ataataataa      4620
     aaagcaagtt gagattaacc ttctcaactc acat                                  4654
//
ID   Gypsy-43_DWil-I repbase;    DNA;    INV; 4210 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_DWil_;
KW   Gypsy-43_DWil-LTR; Gypsy-43_DWil-I.
XX
NM   Gypsy-43_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4210
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1855-1855 (2012).
XX
RN   [3]
RP   1-4210
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           241..4203
FT                 /product="Gypsy-43_DWil-I_1p"
FT                 /translation="MSDLESHEEKPTKVNIATERKTTNKSVIMSGVGQLEP
FT                 FDLNHPNKWTTYKQRFELYLLANDVTEEARKKAALLTLAGAPLFELLTSLA
FT                 SPTQVSDLSLSEIYEILNQHLSPCQSEIAAYYQFHKRDQLIDESVANYMAA
FT                 LRTLAVDCKFGAALDRMLRDRFVCGMKDEGLQKSLLAEADLTIQRAMERAT
FT                 SSEAAAHSAWAMRNTAESTESIHEVQTNAIRPSRPNQHHQPCDGCGGAHLR
FT                 KLCPHRNTVCHACHRAGHLQRVCRAVRDPGRKAFNTSSGHDSYRGPHKQKP
FT                 NEEYSVHSILPLICPKEIVTIIINKRKCQFEVDSGSAITMIDEATFRYIWP
FT                 TDRPNIQDCALEFTDYQKNRIPVIGIVDTSVQYDNKYIPNLPLVVTSSGGS
FT                 NLLGRNWFMPLGISIEGIHAINAKLSIEATLAKYKDLFSSELGRFRGPPVS
FT                 LQINTDATPVRLPARRIPFAIQELYEEELDRLCSQGILVPIEYSDWATPTV
FT                 PVIKKDGTIRICGDYKSTINKVIKQHGHQIPPMNSLLASVEGGSIFAKIDL
FT                 AQAYQQLVVDEQSALMQTICTHKGYFKVTRLQFGISSAPGIFQSCIERILQ
FT                 NVSGVLPYFDDIIVMGKSEEELAVRLNEVLSRFDKAGLRLRRDKCQFGVPS
FT                 VEFLGFKIDALGIRPCASKVEAIKCAPAPKDKKQLQAFLGLINFYHAFLPH
FT                 KATVAEPLHRLLDKNAPWVWAHKHQDAFMNLKNLVTSQNVLMHFDGKLPVL
FT                 LTCDASPYGIGAVLSHKLQDGSEKPIAFYSRTLSKTERNYSQIDREAVGLI
FT                 SGVKKFHNYLYGRSFTLVTDHRPLLGIFTTAKATPNVISTQMLRRAIFLNA
FT                 YDFTLIHRPGSKMGNADFLSRCPLPQQGEGNTTEEVLMIEWAGTPLVSAQS
FT                 LALQTKKDAHLSKVLNWVLRGWPNGKVDRSDQLYSYFSRRHELSANKGILV
FT                 WGNRAVIPEPSRPALLQALHASHPGIVKMKAMARSYFWWPNIDAEIELLVK
FT                 RCNPCQQNRNEQPHTTTHHWESARQPWSRLHIDFAGPFNGNTFLLVVDSFS
FT                 KWLEVSVVKSTSSAAAIKFLRQLFATHGLPDEIVSDNGTAFTSEEFRIFMK
FT                 NNVIRHIRSAPFHPATNGQAERMVQSTKNYLKKFDRNLNIDLALARYLFSQ
FT                 HTTPHSTTNRTPAELLCNRELKSYFDKIQPKEITYGKVCDLTNDKQFSIGA
FT                 PVWVRNYAPGPKWIEGEIVDQTGPISYNVRLHDRRIIKRHFDQLRHRVPPV
FT                 ESTQDTESIELPAEDAVSISDDIPDCPELSEPAPLSPAPVTPRRSSRKRQP
FT                 PEFFNPSGC"
XX
SQ   Sequence 4210 BP; 1260 A; 982 C; 920 G; 1048 T; 0 other;
     ttggcgacga ggatgggata attcgtcaaa cttatatatg tatatgtcgt gtacagttac        60
     aatcgaccaa gcgaaagcga acaaagagac gccaaaaacc gcatgcgtgc tggcgccaag       120
     tttattggaa taaagaaacg gtacttttcc aacgcgcgca tttgcagaca gacgcgctac       180
     gactactgca atttgaattg atgctcaaac acacacacat acgatcgaat tcaactacta       240
     atgtctgatt tggaatcaca tgaggaaaag cccaccaaag tgaatattgc tacagaacgc       300
     aaaacaacaa ataaatcagt gataatgtca ggagtgggtc agttagaacc atttgattta       360
     aatcacccaa acaaatggac aacttacaag cagcgttttg agctgtatct tctggccaat       420
     gacgttacgg aggaagcacg gaagaaggct gcattgctta cgctggctgg cgctccactg       480
     ttcgagcttc taacgtcatt ggcatcccct actcaggtga gtgatttgag tttatcggaa       540
     atatatgaaa tactcaacca acatttgtct ccatgtcaat cggaaattgc ggcctactac       600
     caatttcaca agcgagacca actaattgat gaatcggttg cgaactacat ggctgcactt       660
     aggactctcg ctgtcgactg caaattcgga gctgcgttgg atcgcatgtt gcgcgatcgc       720
     ttcgtatgtg gaatgaagga tgagggtctt cagaaaagtc ttctagcaga ggcagattta       780
     acgattcaac gcgcgatgga acgcgccaca tctagtgagg ccgctgctca cagcgcttgg       840
     gccatgcgaa atacagctga gagcactgag tcgattcacg aagtgcagac taacgcgatc       900
     cgtccaagcc gacccaatca gcaccaccag ccatgcgatg gttgcggggg tgctcacttg       960
     cggaaactgt gcccacatcg gaacactgtg tgccatgcct gtcaccgagc aggccatctt      1020
     caacgagtct gcagggctgt aagagacccg ggtcgtaaag cattcaacac atcgagtggc      1080
     catgactcct accgaggacc acacaagcaa aagccgaatg aagaatacag tgtccacagc      1140
     atactaccgt tgatttgccc aaaggaaatc gttacaataa ttataaataa acgaaaatgc      1200
     caattcgaag tggattcggg gtctgcgatc acaatgatag acgaagctac gtttcgttat      1260
     atctggccaa cggatagacc gaatatccaa gattgtgctc tagagtttac ggattaccag      1320
     aaaaaccgaa ttccagttat tggcatcgtg gatacatctg tccagtacga taataaatac      1380
     attccgaatc ttccactggt tgttacatca agcggtggat cgaatttact tggacgcaac      1440
     tggtttatgc ccttaggcat cagcatagaa ggaatacatg ccattaacgc taaacttagc      1500
     atcgaggcaa ctctggcgaa gtataaggat ctgttttcgt ctgaattagg ccgttttcgg      1560
     gggccacctg tgtcattaca aatcaatact gatgcaacac cagtccgact gccagcaaga      1620
     cgcattccat ttgcaattca agaattatat gaagaagaat tagaccgtct gtgctcccaa      1680
     ggaatcctag tacccattga atactccgac tgggcgactc ctacagtgcc agtaattaaa      1740
     aaggatggta ctattcgcat atgtggcgac tacaagtcta caattaataa agtgattaag      1800
     caacacggcc atcaaattcc tccaatgaat tcattattag catcagttga aggaggatcc      1860
     atatttgcga aaatcgactt ggctcaggcg taccaacaac tagtggtaga tgagcagtct      1920
     gcattgatgc aaaccatatg tacacacaaa ggttatttca aagtaaccag actacaattt      1980
     ggaatttctt cagccccggg catatttcag agctgcatcg aacgtatatt gcagaacgtt      2040
     tctggtgttt taccctactt cgatgacata attgttatgg gaaaatcaga ggaagagcta      2100
     gcggtgcgtc ttaatgaggt gctttcaaga tttgataagg ccggactacg cctacgcaga      2160
     gacaagtgtc aatttggagt tccgtcagta gaatttttgg gatttaaaat cgatgcactg      2220
     ggtataagac cgtgtgccag taaggtcgaa gctatcaagt gcgctccggc tccaaaagat      2280
     aagaaacaat tacaagcatt cttgggactc atcaattttt accacgcatt cctgccacat      2340
     aaggcaaccg ttgcagaacc gcttcaccgt ctactggata aaaatgcgcc atgggtgtgg      2400
     gcccataaac accaagatgc cttcatgaat ctaaaaaatc ttgtaacttc acaaaatgtg      2460
     ctaatgcatt tcgatggcaa attgccagta ttgttaacgt gcgatgcatc tccgtacgga      2520
     atcggagcgg tgctgagcca caaacttcag gatggatcag agaagcctat tgccttttat      2580
     tctagaactc tctccaagac agaaagaaac tactcgcaaa tcgacagaga agccgttggg      2640
     cttatatcag gcgttaaaaa atttcacaat tatctatatg gccgttcttt tactctcgtc      2700
     acagatcatc gcccattgct cggaatattt acaacggcca aggcaactcc aaatgtaatt      2760
     tccacacaga tgcttcgaag agcaatattc ttgaatgcct atgactttac actaattcat      2820
     agaccgggat caaaaatggg caacgccgac ttcttaagcc gatgcccatt accacaacaa      2880
     ggcgaaggca acactacaga agaagtgtta atgattgaat gggctggaac accacttgtc      2940
     agcgctcaat ctctagcatt acagactaag aaggacgcgc atttatcaaa ggttctgaac      3000
     tgggtgttaa ggggatggcc caatggaaaa gttgatcgtt cagatcagct ctactcgtat      3060
     ttttctcgcc gacatgagct ttcagcaaac aaaggaattc ttgtatgggg caaccgggct      3120
     gtgattcccg aaccatctag accggcttta cttcaagcgt tgcatgcttc acacccgggg      3180
     attgtaaaaa tgaaagccat ggctcgaagc tacttttggt ggcctaatat tgatgctgaa      3240
     atagagctac ttgtgaaacg ttgcaatccc tgtcagcaaa accgaaacga acagcctcat      3300
     acaactacac atcattggga atctgccaga caaccttggt cacgccttca tatagatttc      3360
     gctggcccct ttaatgggaa taccttttta ctagtcgtgg attcattttc gaaatggcta      3420
     gaagtctctg ttgtgaaatc tacatcatct gctgctgcta ttaaattctt gagacagctt      3480
     tttgcaacgc acggattacc ggacgaaata gtgtcagata atggcactgc attcacgtct      3540
     gaagaattca ggatctttat gaaaaacaac gtgattcgac acattcggtc ggctccattt      3600
     catcctgcca caaatgggca agccgagcgc atggtacaaa gtaccaagaa ttacctgaaa      3660
     aagtttgata gaaatcttaa catagatctc gcactggcgc ggtatctgtt tagccaacat      3720
     actacccctc actccacgac aaatcgtacc cctgcagaac tactatgtaa tcgagagctt      3780
     aagtcatatt tcgacaaaat tcaacccaag gaaataacat acggaaaggt ctgcgaccta      3840
     acaaatgata agcagttttc tattggtgct ccggtttggg tccgtaacta cgcccccggt      3900
     ccaaagtgga tagaaggcga aattgtggac cagacaggcc ccatttcata caacgttcgt      3960
     ttacatgatc gccgcattat taaacgtcac ttcgaccaac ttcgccatcg ggttccgcct      4020
     gtcgaaagta ctcaagacac ggaatcaatc gaactacctg ctgaggatgc agtctcgata      4080
     tctgatgata tacccgactg tcctgaattg tctgaaccgg caccattgtc cccagctcca      4140
     gtgactcctc gcagatcgag tcggaaaaga caacccccgg aattctttaa cccatctggg      4200
     tgttaagggg                                                             4210
//
ID   Gypsy-43_DWil-LTR repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_DWil_;
KW   Gypsy-43_DWil-LTR; Gypsy-43_DWil-I.
XX
NM   Gypsy-43_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-350
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1856-1856 (2012).
XX
RN   [3]
RP   1-350
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 350 BP; 108 A; 88 C; 52 G; 102 T; 0 other;
     tgttatgtat gtgacccatc tctaagaagc tgttatcgtc ggactgttaa aaggtctgtt        60
     aacagctgca cttctcagtc gttctactaa ttgcttcgga acaacatcgg actcccctgc       120
     tacaactacg agggacttct actactgcga ctactactac agctacaagg gattactact       180
     acaactacga gggattgcta ctaccgcgac tactactaca gctacgaggg acttctacta       240
     ctggacttct acttctacta ctataactac aactactaca tatcccagat ttctactgta       300
     caattatcta ttaataaact atatatacat aagtttgcac aaacacaaaa                  350
//
ID   Gypsy-43_LMi-I repbase;    DNA;    INV; 6055 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6055
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(492..947,922..1650,1547..2098,1962..2813,
FT                 2817..4325,4162..5022,5029..5697)
FT                 /product="Gypsy-43_LMi-I_1p"
FT                 /translation="MPLLRVPKISHTLITSSSLISLVLMCSVHHIRHFGTL
FT                 LLMSSRPFRSVCLSSRRLHRRKRSLRFHFIMLLCQCLCHTILLESSLPRIQ
FT                 PIERLLRCLLRLCWILLWYLHLDNWLTGRNFRHSNLLTRSFGSTWSSKLLV
FT                 SVHLTTMHGSHVSRQCTVHMSHEPSSRPCGLNLRLGXVSPSEREVRYSQTD
FT                 ILERVSKTRRENVRQLIYEERLGDRSPSQLWRCLRLLVEESDMPDDMLTEI
FT                 WTEKLPLSIQTAISAFEDRPNSERLRAADRAYSALLRERRVQQSGSTAGFQ
FT                 PQPEFRRGRPTKTKSVKXAVLPAPASPRNDSTSDSVEDPGPPPSDYSQKRT
FT                 STQKYCFFHESSGNKHVIVDRRAPTQTSIAGRQRCHLLRCKQWVPSHAPFC
FT                 VLSTAVLLPKPQSQVGSGATSCGVNNGCRLMLHSVSNTNASNGRIYVRDLN
FT                 XGSDFLINTGADVSLLPSRLATEKIRPHKAVLRAVNSSSLACTGSTSHTVS
FT                 LSPECNLKWTFLVAQVDEPILGVDFLRHYQLSPDFVVTQCTTRKDSYTFHV
FT                 FRPVWHSFGFGNVKTVFESHGQVRLCCDKMARHSVLPGKTATHSMCFAQFG
FT                 TPSGSEMLKQCLRVMDKLDCVVTKWLDEREQVSYLRSERNQLLRSLQDAQS
FT                 QLASAQRQLDLLRTSSPACISQVSHCVAPAGGVFNSVPVCHSPCVSDCAKL
FT                 LPQTHADARKQRPVAMATASASQLGVLPTPHVAPLVTTAQCTNLTASDLSA
FT                 GSSHVAYCWHACTNSPPAPQFRVAATACAVPETAAYCVAPACSWQPCSSEP
FT                 EAPQFRPATTACALSWADCNFTPTAPRFRPAATASPMSQTIAARASIMFLL
FT                 LRTALSTNSALTARLFRAARLKPEFMKIARDQLDELLKASIIEPSSGCWAS
FT                 PIHFVQKKDGSWRMVGDYTRLNAHTVIDKYPVPHIADFNHALAGAKFFLVL
FT                 DCKHAFHQIPMAPEDVEKTTITTPFGLFQYKFMLFGLKNALQTWQHFINEV
FT                 LSHLDFCFAYLDDILVFAQTKQQSIEHVKIVQDTLAAAGVELNNKKLQLHQ
FT                 PSVVFLSYIVSADGIAPPPDKIQPVLDMPRPTTFKELRRFIGMINYYRKHL
FT                 PAAAEVQAPLTDALAGPNTSGTRTVTWTPAMEKAFEGLKRLLASAVTIAHP
FT                 HQDATLFLTTDASDNAVGAVLSQSFGDTTTPLHFYSKKLNNAQRKYSAFDR
FT                 ELLAVYEAIKHFRTELEGRDFYVLTDHKPLVSAIKNPPADPPPRCFRHLDY
FT                 VLQFTNDVCYIKGADNVVADFLSCVGAVSSLIDLSDLPRLQSEDPDTMQLI
FT                 SDHSSSLKPVRATFPGISGEVWCDESTGSLRPVIPKSLQMPTLRQAPLACS
FT                 PGRSQITVPHLNQSVPPSPAFLARFGVMSLRAPCALSYQSRSKCRLFDKLH
FT                 SLAHPGVKASTRLVSERFVWRDMRRDCQSWARACVPCQQNKVSRHTSPPLG
FT                 SFSQPKGRFQHVHIDLVGPLPASEGFKYVLSAIDRTTRWAEAIPLSTMTSQ
FT                 AVARAFLDQWIARFGCPAYLTTDQGRQFESALFSDLCHLCGIVKIHTAAYH
FT                 PQSNGFVEHWHRILNAALCCHGSLWTEXLPLVLLGLCTTFKEDLKGSVADF
FT                 CLRPAVGAAWGTGVSFPCCSFFRAAFYGRAGAXYLDSAAPLVQSHXPRVYV
FT                 PRALLSCDYVFLRDDTVKAPLQSPYTGPYKVVRRSSNNLDLLIKDNIVTVS
FT                 LNRLKPAFIEPSALTSAGDSPSFSPCEGFQDSSPSQASRSGASTPRRASSP
FT                 SASSSYHDSSASHHSFLAKLRILLFPQRPSLLLVIFPPLATLGRVIQPRPL
FT                 PPRTPRALPVEVFPRLPHRPRLRRLLTLLSYAHTFTQMTFATCQWWSPVGR
FT                 RLC"
XX
SQ   Sequence 6055 BP; 1237 A; 1800 C; 1415 G; 1596 T; 7 other;
     ttggtgaccc cgagttagtt ttcgccacga ttgtgtcgct tcgctcgagt gtttgtgctc        60
     aaccacgccg gtttttgcgc ccgccgcctt tgtcgccgag acaatggatt ggtcttggac       120
     ggtacaatcg cttccgccga accagcgacc gccgccgggt tttcaacata atatggagca       180
     tttttacact gctactcgtg tgggtgagga cttttcacag cgtgtgtgtg gctttacgac       240
     tcctacactg cagcagcatg tgggtacccc ggcatgtaca ttggactctg catatggtag       300
     cccggacatt tctggtgctt catttactaa tggtgtttga aatgtgccta ctccagtgcc       360
     ttctcatgct tatcaagaca attatgcgca tgagcaaaac tttccacaag ttctgcgcat       420
     tggtgacggt ttaaattcaa acgtgccatt ggtgtatccc tctgtgcaag tgttgtactc       480
     tacgcctcgc catgccactt ctccgagtgc ccaaaatatc ccacacgctc attacgtcga       540
     gcagcctaat cagtttggtg ctaatgtgca gtgtacacca catcagacat ttcgggactt       600
     tgttgttgat gtcgagccgc ccattccgca gtgtatgcct gtcctcccgc cgcctccacc       660
     gcaggaagag gtccctccgg tttcacttca ttatgctcct atgtcagtgc ctatgccaca       720
     ccatcctcct cgagtccagt ttgccgagga ttcagcccat cgagagactg cttcgatgcc       780
     tcctccgcct ttgttggatc ctactttggt acctacatct cgacaattgg ttaactggcc       840
     gaaacttccg gcattcaaac ctgctcaccc ggagttttgg ttcaacctgg tcgagcaaac       900
     ttttagtgtc tgtgcacttg acgacaatgc acggttcaca tgtctcatga accatcttca       960
     cgaccgtgtg gacttaattt acgacttggt kaagtctccc cctctgaacg agaagtacgt      1020
     tacagccaaa cagacatact agaacgtgtc tccaagacaa gaagagaaaa cgttcggcaa      1080
     ctcatctacg aagaacgtct cggcgacaga tctccgtccc agctgtggcg ttgcctgcga      1140
     cttctcgttg aggagagcga catgcctgac gacatgctca cagagatttg gaccgaaaag      1200
     ctgcctttgt cgatccaaac cgctatctcc gccttcgaag ataggccgaa cagcgaacgc      1260
     ttgcgcgccg ccgaccgagc ctactccgct ctactgcgtg aacgccgcgt ccagcagtcc      1320
     ggcagcaccg ccggttttca accacaaccg gagttccgac gtggacgtcc taccaaaact      1380
     aagtctgtca agmtcgctgt actaccggca cctgccagcc cacgcaacga cagcacatcg      1440
     gattccgtgg aagatcctgg gccgccgcca tctgactact cgcaaaagcg gacgtccacc      1500
     caaaaatact gtttctttca cgaaagttca gggaacaagc acgtaattgt cgaccgccgt      1560
     gctcctaccc aaacctcaat cgcaggtagg cagcggtgcc acctcctgcg gtgtaaacaa      1620
     tgggtgccgt ctcatgctcc attctgtgtc taacaccaat gcgtcgaacg ggcgcatcta      1680
     tgtccgtgat ttgaacwctg gctcagactt tctcatcaac acgggcgcag atgtttccct      1740
     gctcccatcc cgtcttgcta ccgaaaagat ccgaccacac aaagctgttc tacgtgctgt      1800
     aaattcatct agtttggcgt gcactggttc tacttcacat acagtgtccc tctcgcctga      1860
     gtgcaacctg aaatggacct tccttgtggc tcaggtcgat gaacctatcc ttggtgtaga      1920
     cttcttacga cattaccagt tgtcaccgga cttcgttgta acacagtgta ctacccggaa      1980
     agacagctac acattccatg tgtttcgccc agtttggcac tccttcgggt tcggaaatgt      2040
     taaaacagtg tttgagagtc atggacaagt tagactgtgt tgtgacaaaa tggctcgatg      2100
     agcgtgaaca agtttcatat ctcagaagtg agaggaatca gttgcttcgc agcctacaag      2160
     acgctcaatc gcaacttgct tctgcccagc gtcaattgga tttactccgg acctcttcgc      2220
     cggcttgcat ttcacaggtt agtcactgtg tggcccccgc gggcggtgtt tttaattctg      2280
     tgccggtgtg ccattctcct tgtgtcagtg actgtgctaa actgttgcct cagactcatg      2340
     cagacgctcg taaacagaga ccagttgcta tggcaacagc gtctgctagc cagttaggtg      2400
     tgcttccaac gccacatgtg gcgcccttgg taactactgc tcagtgtacc aaccttaccg      2460
     cgagtgactt gtcggctggt agctcccatg ttgcatactg ttggcacgct tgtactaatt      2520
     cgcctccagc gccgcagttt cgtgtcgccg ccaccgcttg tgctgtacct gaaacagctg      2580
     cctactgcgt cgcgcccgcg tgcagttggc agccgtgtag ttccgagcct gaagcgccgc      2640
     agtttcgccc ggccaccacc gcttgtgcgc tgtcatgggc agactgtaac ttcacgccga      2700
     cagcgccgcg gtttcgccct gccgccactg ctagccctat gtcacagaca attgccgccc      2760
     gcgccagcat aatgtttttg ttgttaagaa cggcactcag cacaaactcc gcctgactga      2820
     cggcccgcct atttcgtgct gcgcgcctca aaccggagtt catgaaaatt gccagagatc      2880
     aattagatga gttactcaaa gccagtatca tcgaaccgtc atctgggtgc tgggcctctc      2940
     cgatccattt cgttcaaaag aaggacggct catggcgcat ggtcggggat tacactaggt      3000
     tgaacgcgca tactgttatt gacaagtatc ccgttccgca cattgctgat tttaatcacg      3060
     cgctagctgg ggctaaattc tttttggtgc tcgattgcaa acacgctttc caccagatcc      3120
     ccatggcccc tgaggatgtt gaaaagacca ccataaccac tccgttcggc ctctttcagt      3180
     acaaattcat gctgttcggt ttgaagaacg ctctgcaaac ctggcagcat tttataaatg      3240
     aagtgctttc tcatctagac ttttgcttcg cctatttgga cgatatcttg gtgttcgctc      3300
     agactaaaca gcaaagtatc gagcatgtga agattgttca ggatactctt gccgccgctg      3360
     gggtcgaact aaataacaaa aaactgcagc ttcaccagcc gtcagttgtg ttcctgagtt      3420
     acattgtttc ggctgatggt atcgcgccac ccccggacaa gattcaacct gtgctcgata      3480
     tgcctcgacc taccacattt aaagagctgc gtaggtttat aggaatgata aattactacc      3540
     gtaagcacct cccggctgcc gctgaggttc aagctccgtt aactgacgcc ttggctggtc      3600
     caaacacttc cggcactagg acagtcacgt ggaccccggc catggaaaaa gcatttgaag      3660
     gtcttaagag actcttagcc agtgcagtca ctatcgccca tccgcatcag gacgctactt      3720
     tgtttctaac cactgacgct agtgacaatg ctgtgggggc agtccttagt cagtcttttg      3780
     gtgacactac cactcccctc catttctatt caaagaaact gaacaacgca cagagaaaat      3840
     actccgcgtt cgacagggag cttcttgccg tgtacgaggc aattaaacat tttcgcacag      3900
     aattagaggg tagagacttt tatgtgttaa cggaccataa gcccctcgtt tcggcgatta      3960
     agaacccgcc cgctgatccc cctccccgat gctttcggca cctggactat gtgctacagt      4020
     ttacaaacga tgtgtgttat atcaaggggg cagataatgt tgttgcggat tttctctcct      4080
     gtgtgggagc tgtttcctcc ttgattgact tgtcagacct ccctaggctg caatcggagg      4140
     atcctgacac gatgcagttg atctcagatc acagttcctc acttaaacca gtccgtgcca      4200
     ccttccccgg catttctggc gaggtttggt gtgatgagtc tacgggctcc ctgcgccctg      4260
     tcataccaaa gtcgctccaa atgccgactc ttcgacaagc tccactcgct tgctcacccg      4320
     ggcgttaaag cctccactcg cttggtttcc gagcgtttcg tatggcggga catgcgacgc      4380
     gattgccagt cttgggctcg cgcctgtgta ccctgccaac agaacaaagt ttcgaggcac      4440
     acttcgcctc cccttggcag tttctctcaa cccaagggac gctttcaaca tgtacacatc      4500
     gatttagtgg gccccctccc tgcgtccgag ggtttcaaat acgttctctc tgccatcgac      4560
     cgcaccactc gatgggctga ggccatcccg ctttcaacta tgacctctca ggctgttgct      4620
     cgtgcctttt tagaccagtg gattgctcgt tttggctgtc ctgcctacct taccactgat      4680
     cagggtcgac aatttgagtc tgctttattt tccgatcttt gtcatttgtg tggtatcgtt      4740
     aaaatccaca cagcagcata tcatcctcaa agcaatggct tcgtcgagca ttggcatcgc      4800
     atcttgaatg cagctctgtg ttgccatggc tctctctgga ctgaakcgct cccccttgtt      4860
     ttgctcggct tatgcaccac tttcaaagag gaccttaagg gctctgtcgc cgatttttgt      4920
     ttacggccag ccgttggtgc tgcctgggga actggtgtct ccttcccctg ttgctcattc      4980
     ttccgagctg ccttctatgg tcgagcaggt gcgmactatt tgtaataaga ttcagccgcc      5040
     cccctcgtcc agtcacactm gccacgcgtt tatgttccgc gcgctcttct gtcgtgtgat      5100
     tacgtcttct tgcgggacga cacggtcaag gccccacttc aatcaccata tactggccct      5160
     tataaggttg ttaggcgttc gtccaacaac ctggacctgt taatcaaaga taacattgtc      5220
     actgtctcgc tcaacaggtt gaagccggct ttcattgagc cgtccgctct tacttctgcc      5280
     ggcgattctc cctccttttc tccttgtgag ggttttcagg attcttcgcc ctctcaggcc      5340
     tcacggtcgg gtgccagtac ccctcgccgt gcctcttctc cgagtgcctc ctcttcttac      5400
     cacgactcct ctgcaagtca tcactcattc ctggccaaac tgcggattct tctatttcca      5460
     cagaggcctt ccctacttct tgtgatcttt cctcccctgg ctacgctcgg ccgcgtcatt      5520
     cagccacgcc cactsccccc tcgcacccca agagctctcc ctgtcgaggt tttccctcgc      5580
     ctaccccacc gtcctcgcct ccgccgtctg ctcacactat tgagctatgc acacacgttc      5640
     acccagatga catttgcaac ctgtcagtgg tggtcaccgg taggtcggcg gttgtgttag      5700
     tggcgtgtga caaagctcag gcaggttcac cctcgcagag ggttgtgcgt cactttaaca      5760
     ttacggagtg tgcttagggg caacctacga gcgtttgtca ggccaagtgg gaaggtgctg      5820
     cttcgcatgc cggacgacgc gtcgcttcag cccgtctcca gcttcggacg tcacctttgc      5880
     catccgctgt tgctggcgga cttcgcggtg agcgttccgg gcttcgtccc ccactcgccg      5940
     ccttcacgcc ctcttccgca ggacgcagaa gagctaccag tcacattctt ggattctcgt      6000
     caccccctcc cccccaccat caggtgcgta ctccatactg gggggggggg ggcta           6055
//
ID   Gypsy-43_LMi-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-192
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 192 BP; 44 A; 50 C; 42 G; 56 T; 0 other;
     tgtggcggag atcgacccat cgataaccgc cgaatgtgat atctttgcaa tgcatgatgt        60
     tctttggtat gttcccggcg gcaaggcagt tacctcatgg ccgcctaccc atgtacaagc       120
     cttgatgcaa taaatcttta tttacgaaga gttatcgact gggtcatttc tgcctacgtc       180
     tccaaccctt ca                                                           192
//
ID   Gypsy-43_MoPha-I repbase;    DNA;    INV; 4834 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4834
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1120-1120 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..4765
FT                 /product="Gypsy-43_MoPha-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDREKLSKLSTEALKKEATRAGLADQIKIPVDRKELI
FT                 EMILAQRNAENLPDLDPESANSVLEGTEESTDSTTLHRGMETASLPNEVKQ
FT                 LLAAMTADFTAKQLELQRQQQQFMERQQQQFTMLAQMLTGQRDAPREQEFA
FT                 TGVNLQYATSIHHSPPNLNGTPRTGETGSSTVKVSTLVTQIPEFGGTEDEN
FT                 VRIWIRRVNSVAQIHAATDGITLLAASSRFTKVAKRWYDRQQGAALETWTA
FT                 LQQRLTKAFDSKISFYGAMQKIEARTWKCNRESFVQYAMDKLDLMNNLDIS
FT                 ERDSISLLAGGITLDSLRYTALSLDTDSIEDFLEKMRPLTKNITETVKKTP
FT                 SKNGSRPRDPDACRNCGKRGHTHNECRGEAMCFYCKTKGHRQYECPNKRKR
FT                 SEVAPARTTSTRPTTTARSMEASAAVAAESSVSESVAAVRDIVAAKGNRLE
FT                 ITGPFVKIRALEGKDCELSALVDTGSPVSFINNTAFTKYISLNVKELKPVE
FT                 RMLTNLSRKPLELLGIVKTNVTIDLLPSDRFEIELYVMRDNLFNGDIILGR
FT                 DFLQNENLTLIYRPLLSEQGERVSLFAFLPLYVDEDTQQGSVLDTVKNTII
FT                 DFDENTKSRLEQVIAETQLAEIIPEPDDYTVSVNIRDPSIFAFAPRRFAYA
FT                 ERLELRAITDDLLQRGIIQQSTSPYCSRVVPVRKKNGKMRLCVDLRPLNSR
FT                 VNKQKYPFPLIEDFLTRLNNKKVFTLLDLKDSFHQIRVSPEHTKYFAFATP
FT                 DGQFEYKYLPFGFCESPAEFQKRLVQILNVFIRDDRAMVYIDDVLIPSETV
FT                 EQNLETLREVLITLRKYRFELNLSKCQFLKRRIEFLGYIISSDGLTLSPRH
FT                 TEAVHNFKIPESVHEVQRFLGLTNYFRKFIKNYALKARPLHNLLRKGVAFK
FT                 FDKTCYQAFNALKDELISSPVLQLYDPVAETELHTDASSLGLGAILLQRRQ
FT                 SKTWAPVAYFSRATNQAEMRYHSYELEMLAIVRAVERFHLYLYGIKFTIIT
FT                 DCNAIVHAVNKANINPRIARWTLTLQNYDFKIVHRPGKSMAHVDALSRSVA
FT                 VVDALSLESILMYKQLADPRILEISQTLEKAPMENYTLVDGLVYRIVDNQL
FT                 RFLVPEAMTVSVIRTYHDDMAHCGYEKTLQGIQRSYWFPALRKKVQDYINN
FT                 CITCIIANSSANRLEKNVHVSVAKAIMDTLHIDHFGPLQTTVDGYKHILVV
FT                 IEALSRFTWLFPVRTTCSRETISQLDIIFNTFGNPLEIVSDRGTSFTSEEF
FT                 AARMKQLNINHRKIAVASPWANGLAERVNRFLKTSLSKLIDSPDGWKAQLA
FT                 KVQYVINNTYHSVIKSTPAQLMFGFDQRNHVDASLSRLTKALTDCDSELVI
FT                 SREEKRLKAIEATALLQQYNKQYVDQRSRKPTIYKKGDFVVIRDTRVKPGQ
FT                 SGKLKPSYKGPFIVDKELGYNRYVIKDVPGFNHSTRPLNTILSSDKLKKWT
FT                 NLPSIE"
XX
SQ   Sequence 4834 BP; 1477 A; 1055 C; 1119 G; 1183 T; 0 other;
     acatcagaag tgggatcgtg ctccggcttt tcggctattc gcgtctcgtg tgcctcgacc        60
     gccttttgga gcacgtgtct tctcggactt cgacgtagcc tcggtacagg tgggaaaatc       120
     tcgaatatct cgcgaatctc gacggaatca gtttcgctcc gatctcgtct cgcgctccac       180
     gtttgctccg gtaaccacgt gctgtttctc gagcatctcg tctcgctccg agctacgtat       240
     cggctccgga gtatatcgtc ggccagccat tacgcgtatc agtcgcgcct cgtgcacagt       300
     gtcgtgtact ccgagttagt gtaattatct ggaaaagaat aaaactctga ttatggaccg       360
     cgaaaaatta tcaaaactat cgacggaagc cctgaagaag gaggctacgc gcgccggact       420
     tgcggatcaa attaaaatac cggttgatcg caaggaactc attgagatga ttctcgcgca       480
     aagaaatgcg gagaatctgc ctgacctcga tcccgaatct gcgaactcgg ttctcgaagg       540
     tacagaagaa agtacggact cgacgacgtt acataggggt atggaaaccg cctctctccc       600
     gaacgaagtt aaacagcttc ttgcggcgat gaccgccgat ttcacggcta aacaactcga       660
     gctgcaaaga cagcaacaac aatttatgga aagacagcaa caacaattta caatgctggc       720
     ccagatgctt accggacaac gggacgcgcc gcgcgaacag gaatttgcga cgggggtgaa       780
     tttgcaatac gcaacttcaa tacatcactc accgccgaat ctcaacggga caccgaggac       840
     gggggagaca ggctcttcga cggttaaggt gtctacgctg gtgactcaga tccctgaatt       900
     cgggggtacg gaggacgaaa acgtgcgaat ttggatccgg agggtaaata gcgtagcaca       960
     gattcacgca gcaactgatg gaatcacgtt actcgcggcg tctagtcggt tcacaaaggt      1020
     ggcaaaacgg tggtatgacc gccagcaggg cgcagctctc gaaacgtgga ctgcactgca      1080
     gcagagattg accaaggcat ttgatagcaa aatttcattc tacggagcaa tgcagaaaat      1140
     agaagctcgc acgtggaagt gcaatcgcga atcattcgtg caatacgcga tggacaaact      1200
     cgatttaatg aacaacctgg atatctcgga aagagactct attagtctgt tggcaggagg      1260
     aatcacacta gactctctaa gatatacggc tttgtccttg gatacagact cgattgaaga      1320
     ttttctcgaa aaaatgagac cgctcaccaa gaacattacg gaaacagtaa agaaaactcc      1380
     gagcaaaaac ggctcaaggc cacgagatcc ggacgcatgc aggaactgtg gcaagagagg      1440
     tcacacgcat aacgagtgtc gcggagaagc gatgtgcttc tattgtaaaa ccaaagggca      1500
     tcgacaatac gaatgcccga acaagaggaa gaggagcgag gtagcaccag ctcggactac      1560
     gtcaacgcga ccgacgacga cagcccggtc catggaggca tcggccgcgg tcgcagcgga      1620
     gtcatcggta tcggagtcgg tagcggcagt aagagacatc gttgcggcaa agggaaatcg      1680
     tctggagatc accggcccgt tcgtgaagat acgcgcctta gaaggaaaag actgtgagtt      1740
     atccgctcta gtagatacag gaagccccgt ctcgtttatt aataatacgg cgttcacgaa      1800
     atatattagt ttaaacgtta aagaattaaa gccagtagaa cgtatgctaa caaatctaag      1860
     tagaaaaccg ttagaattac tcggaattgt caaaacaaat gtaacaatcg atttattacc      1920
     cagcgatcgt tttgaaattg agctgtacgt tatgcgcgat aacttgttca acggcgatat      1980
     tattttgggt cgcgactttc ttcaaaacga aaatctcacg ttgatataca gaccgttgtt      2040
     atctgagcaa ggagagcgag ttagcttgtt tgcattcctt ccgttgtatg tggacgagga      2100
     cacacaacaa ggatccgtac ttgatacggt caaaaatact attattgatt tcgacgaaaa      2160
     cacgaagtca cggctagaac aagtgatcgc ggaaacacag ctcgctgaga tcattcccga      2220
     acccgatgac tatacagtca gcgtgaacat acgtgatccc tcgattttcg cgtttgcgcc      2280
     acgacgcttc gcctatgcgg agagactaga gcttagggcg ataacggatg acctcctgca      2340
     gcggggtatc atccaacaaa gcacctcgcc gtactgttct cgggtagtac ctgtaaggaa      2400
     gaaaaatgga aaaatgagat tgtgcgtgga tcttcgacca ttgaatagcc gcgtaaataa      2460
     gcaaaaatat ccattcccgc taatcgagga tttcctaaca aggctcaata ataagaaagt      2520
     tttcacgttg ctcgatttaa aggatagctt tcatcagatt agagtatccc cggaacacac      2580
     caagtatttt gcatttgcga ccccggatgg tcaattcgaa tacaaatatt tgccatttgg      2640
     tttctgcgaa tctcccgcgg agttccaaaa gagactcgtg cagatactca atgtgtttat      2700
     tcgagacgat cgagctatgg tatacattga tgatgttcta atcccgtcag agactgttga      2760
     gcaaaatctg gagaccctca gggaagttct gattaccctg agaaaatata gattcgaatt      2820
     aaacttaagt aaatgtcaat tcttaaaaag gagaatagaa ttcctcggct atatcatatc      2880
     aagtgacggc ttaacgctaa gcccgcgaca tacggaagca gtacataatt ttaaaatacc      2940
     agaatcggtt cacgaagtgc aacgttttct cggcttgact aattattttc ggaaatttat      3000
     caagaattac gcccttaagg caagaccgtt gcataacttg ttacggaaag gagttgcatt      3060
     taaattcgat aaaacatgtt atcaagcatt caacgcgctt aaggatgaac ttatttcatc      3120
     accagtgctt caattgtatg acccggtagc agagacagag ctacacaccg acgcaagctc      3180
     tctcggcctc ggtgcaatat tattgcaaag acgacagagt aaaacatggg ctcctgttgc      3240
     ttatttcagt cgtgcgacca accaagctga aatgagatac cacagctacg aactcgaaat      3300
     gctggctatc gtacgcgcgg tggaacgttt tcatttgtac ttatatggta taaagttcac      3360
     tataataact gactgtaacg cgatagtaca tgctgtcaat aaggcaaaca taaatcctcg      3420
     aatagctcgg tggactctca cattacagaa ttatgatttc aagattgtac acagacctgg      3480
     caagtcaatg gctcacgttg atgcgctgag tcgtagcgta gctgtagttg atgcattatc      3540
     gctcgaatca atcttaatgt acaagcagct tgctgacccc agaattctag aaataagtca      3600
     aactttagaa aaagctccta tggaaaatta tacattagtc gatggattag tatacagaat      3660
     agttgataat cagttaagat ttctcgtacc agaagcgatg acggttagcg tgatccgtac      3720
     ataccatgat gacatggcac attgtggcta tgagaagaca cttcaaggga ttcagcggag      3780
     ttattggttt cccgccctac gaaaaaaagt acaagattat attaataatt gtatcacttg      3840
     tataattgcg aatagttcgg ctaatagatt ggaaaagaat gtgcatgtat cagtcgctaa      3900
     ggcaatcatg gacactctac atatagatca tttcggtccg ctacaaacga ccgtagacgg      3960
     atataaacac attcttgtag ttattgaagc gttatcgcga ttcacgtggc tgttcccggt      4020
     aaggacaacc tgctcgaggg aaactatcag ccagctcgat attattttta acacatttgg      4080
     caacccgctt gaaattgtct cggatagagg taccagcttt acttcagagg agtttgctgc      4140
     tcgtatgaaa caactaaaca taaatcaccg caaaatagca gtcgcatctc cttgggctaa      4200
     cggcctggct gaacgtgtta atcggttttt gaaaacctcg ttatccaagc tgatagattc      4260
     ccccgacggt tggaaggctc aacttgccaa agtacaatac gttattaata atacatacca      4320
     ctctgtgata aaatcaactc ccgcgcaatt gatgttcggt ttcgaccaga gaaaccacgt      4380
     cgatgcaagt ctgtcacggc ttacaaaagc tttaacagac tgtgattctg aattagtaat      4440
     aagtcgagaa gaaaaaaggt taaaagcgat cgaagcaacc gcgttgttac aacagtataa      4500
     taaacaatac gttgaccaaa gatctcgtaa gccgactatt tataaaaagg gagacttcgt      4560
     cgtgattaga gatacgcgcg ttaaacccgg acaaagcggt aaattgaaac ctagttataa      4620
     gggaccattt attgttgaca aggaactcgg ttataataga tacgtgatca aagatgtacc      4680
     tggattcaat cactctacga gaccgttgaa taccatatta tcgtcggata aattaaaaaa      4740
     atggactaat ttaccttcta ttgaataagt ggtgtaaata aatataatta cagttgcagc      4800
     ttcgggacgt agctgaaaag tagaatggcc gaac                                  4834
//
ID   Gypsy-43_MoPha-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-340
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1207-1207 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 340 BP; 95 A; 67 C; 96 G; 82 T; 0 other;
     tgtaaaatga cgatcggtat tactaggcta cgagacccca tatagaagtt ggctgcactg        60
     gagtggcgtg cacgtcgaca taaggtggcg tgacggtaga ggcatagggg atgcgagctg       120
     tcaaccggat gatgagtaga agggagagct ggactaggct ccggcgcgga tgtaggcgcg       180
     gactgctctc tctcggttgt gagcctcgga cgtgattgcg agtgactgta caaaagaaca       240
     ttgaatatac ctacctttag atatagtaac tcgagaagtt tattaaaccc gcatatatcc       300
     tagtttcaca ttcctatagt gaatagagaa caatcttaca                             340
//
ID   Gypsy-43_MSe-I repbase;    DNA;    INV; 4963 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4963
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 920-920 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4963 BP; 1864 A; 779 C; 1005 G; 1306 T; 9 other;
     agtggcgacg agaaaatagg taagaattga tttattatac gactataaag caataaacaa        60
     aacaggttag ggattgtaca aacatttaga aaggataaaa tatgtgagta aatttataaa       120
     gtacccgcag aattaaatta tcgtaaatta ttatttttaa acaatgaaat tgctatctat       180
     gtagtaaagt actataggcg aaacatgatt agtttgtcaa aacaactgtg gtggatgggc       240
     ctcacattaa tagctactta acggcgcggc gggcgttgat ttatatagtt ttgctttggt       300
     ttgtatttta cgcgagaata agcatcttta cttatgataa ttaaaattgt gaataaacac       360
     aatatgataa gggtattaat gttgtattat atttaatact aaaataataa ttattgggtg       420
     tgtggtgaat ggtcggtgca ctggttgcgc cccctttgcc tttgctgtct ttctcgggaa       480
     tggaggcgtg aatttgtgcg tattttatgg gtactagtta ccaccattaa attggtatca       540
     gggtacaaaa atgtaccacc attaaattgg tatcagggtm caamwatgta ccaccattaa       600
     attggtatca gggtacaaaa atgtaccacc attaaattgg tatcagggta caaacatgta       660
     ccaccattaa attggtatca gggtacaaac atgtaccacc attaaattgg actgggtaat       720
     agttatcaca actaaattgg tgtcagggta caaagatgta ccaccattaa attggcaata       780
     gggtacagag tgtactacca ttaaattgga cattgggtaa taaattacca ccattaaatt       840
     ggagtctggg tacatagata ccaccattaa attggagatt agttaaaaac aaaaaacttg       900
     tttcaggtaa cgccccataa aaaaaaataa cactaaaaaa aacaattwaa taaatataaa       960
     gtaaagaaat taaaatgaca agtataccaa taccagcttt agaaaagttt gatcttgaag      1020
     gtgaaatcac atccttagct accaagtggg ctaaatggaa gagatctttc ttaatatacc      1080
     tggacgcagc cgagattaca tcggcatcaa aaaagggcta cgctattaca ctttggagga      1140
     tcgggagtac aagaaatttt ctacaattta ccaggagcca acatcgaatc atcaggaacc      1200
     gttgatgtat ttgaagtggc aatacagaaa ctggacgaat actttcaacc aaaacagagc      1260
     aaagtttatg aacgacatgt ctttcggtta ttaaagcagg aagaaggaga aaaatttgag      1320
     aaatttttag taagattgcg ccagcaggcc gaaaaatgtg cattcgataa acaagacgat      1380
     cacatcatag atcaaattac agaaaaatgc aattcaacaa aattacgaaa gaaaattttg      1440
     actttaggag acggtgtcac ccttgaccaa atcataacgg aagcaaacac tcttgaagtg      1500
     gtgacccaac aattagaaga ctacagtaat aagaacaaaa atttagatat taatttaatt      1560
     actaaaggaa ataaacaata taacagaggt aaagactatc aaaatcagtc gcatcataaa      1620
     aaaagagcac attgtggtag atgtggaagt aatgatcact tttcaagtaa tgtaaattgc      1680
     ccagcccaag gagagaaatg tcattcttgt ggcaaaattg gacacttttc gcttatactg      1740
     caggtcccca aggaatacag aaccgcagaa aaggaaaatc gatgaatttc gaaaaagaga      1800
     aacaaatcaa aataatcaga aaaggacgaa actggataaa gaaagagatg tagatctaat      1860
     agaaactgaa gaaatagact atgtttttca ggtggataat gataccacta taaaatgtac      1920
     agttggtggc gtaacaattg atatgttaat tgattccgga tgtaaattga accttatcac      1980
     ggagaaaaac gtggaaggaa ttaaaaagca aacgggtaca tgtttgtaat caagtcaaaa      2040
     gacctaagaa gactttgtta gcgtatggta gtaacactcc attggtcgta gaaggttcat      2100
     tcgaaactac aatcgaggtt aatggtcgga aggaatttgc cactatatat gtaatttcag      2160
     gaggtaccag agacctatta ggcaaagaca cagctgtttg tttaggtgtt ttgaagctgg      2220
     gcattgggat aaatcaaata caaataaccc catttccaaa attcaaaggc atattactag      2280
     agatccctat tgacaattct ataaagcctg tatcccaacc gtatcgcaga gtaccgatac      2340
     ccattgaaga aaaggttgaa attaaaatta aagaactatt agacaatgac attatagaag      2400
     aagtccaagg cccgtctaaa tgggtttcac caattgtgcc aataatgaaa gggaatggtg      2460
     aattacgttt gtgtgttgat atgagacgcg caaacgctgc tatcatgcgg gaaaaccacc      2520
     ccccctgctc ctctatggga tcattttcta ccaaaaatga agaatgctag atattttagc      2580
     aaattagata taaagaatgc cttccatcaa gtggaaattc attccgattc taggcatata      2640
     acaacattca taacctccaa aggcttatat aggtataaaa gattgatgtt cggtattact      2700
     tgtgcccccg agattttcca gaaaatcatt gaaaagatgt tgataaattg taacggagtc      2760
     gtgaatttta tcgacgatat ccttgtttac ggtgaaagtg aggaacagca tgatactaga      2820
     ctaaaaaaag tcctgcaggt gcttaatgaa aacaatgctg ttttgaataa cagtaaatgt      2880
     atatataaga cacaagatgt aaatttcctg kgacacaagc ttacacatga aggagttaaa      2940
     cctttggaca aatatgttaa tagcataaag aattttaggg ttccgaaaac catagaggaa      3000
     ctgcaaagtt ttttaggtct cataaattat attaacaagt gggtaccaaa tttagctaca      3060
     aatgacagaa acccctaaaa gcgattacka agactacgaa tgggcaaaag ggatagttta      3120
     gaaaaaatat ggtctgagga acaaagtaaa gcatttaata accttaagca gatattaacg      3180
     aaaatacaat ctttaggata ctacaacgtc aaagatgcaa cacaagtgat agcggatgct      3240
     agccctgtag gacttggcgc tgtacttgta caaagtgata cacgtggtcc taggattatt      3300
     gcttatggta atcgaacgtt gacagactgc gagcgcagat atagccaaac agaaaaagag      3360
     gcactggcat tggtctgggc ggtcgaacat tttaatattt ttctattcgg gaagcatttt      3420
     gatctgatca ctgatcataa gccattagag atattgtttg gacctaaatc aaaaccatgt      3480
     gcgagaattg aacggtgggt actgaggcta caatcatata cctttaaagt tgtgtataaa      3540
     mccsggaaaa caaatatagc tgatcctctg tcacgattgt gtaacattga cgatccacaa      3600
     aaggagaaga tacacatgtg catcaaatag tagaaaattc tcggccagtc gctatatcca      3660
     tgagtagcat agttgcacat tcagaaaaag atcatgagat ttgcagtgta aagaaaggtg      3720
     tttatcagaa tgaatgggat gattccatta agagctataa aatttttcaa aatgaattgt      3780
     gtttctataa caatattttg cttcgtggga acaaaattgt aataccccaa caactgcgca      3840
     aaatgtgttg aatgctgcgc acgaaggcca ccctggaata gtaggcatga aggcacgttt      3900
     gagatctaag gtttggtggc ctcgcatcga taaagatgtg gaaaacgtag tgaaagcttg      3960
     caaaggctgt acattggtga gtcttccaaa cccaccagta cccatgaaga gacgagagtt      4020
     gcctacggcg ccgtgggtag atattgcagt agatctaatg ggaccattac caagtcaaga      4080
     atatatttta gtagtggttg attactacag tcgatataaa gaggtgaaaa tcactaaaac      4140
     gatcacgagt ttacagatca tcaaactact aaaagaatca tttagtagac ttggttatcc      4200
     tatttcsata acagcggaca atggtaggca gtttgtcagt gaagaattca gaactttctg      4260
     caaggaatgc aatatcagat tatttaatac catcccatat tggcctcaaa tgaacggcga      4320
     ggtcgagcga caaaatcggg acattttaaa acgtcttcgt attagtcata tcgagaataa      4380
     agatttaaag gaaagtctat gggagtatct acttatgtac aataatacac cccatacagt      4440
     tactggacga tcaccatctg aactgttctt ccaacggcaa agtagagata aaataccttc      4500
     actaggagaa ataaactata gattaaatga ctcggaaatt agagataagg ataaaataca      4560
     aaaagaaaaa aggaaaagaa tatggagata ggaaacggaa agccctagaa tcagatataa      4620
     tagagggaga taaagtttac gtaaaaacaa tggaaaaatc caacaagctt acaactaatt      4680
     ttaaccctac gccacatgtt gtggaaagtg aacataatgg tgactgcacg gtacgtaata      4740
     gtgaaacaga ccaaagattt agaaggaacg tgatacattt gaagagggtg gaaggcaaat      4800
     ggacgagtgt accatcagac cagagttcag aagagcaaag tctagaaaac taaacaatat      4860
     gatttccata agaatagatc tgatttatga ttgtatttca ttgggtataa ggattaatga      4920
     aaaaaaaaaa aataaagaaa tcaaaaatat gacaagaagg aga                        4963
//
ID   Gypsy-43_MSe-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-245
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 969-969 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 245 BP; 91 A; 41 C; 36 G; 77 T; 0 other;
     tgtagtgttt gtgatataat tatacttata tacacattat atattattat gaaatatcaa        60
     tatattatta tatttaacat tatactaaac aaatatacaa ataaacatac ataaacataa       120
     tatatacatt tcactgtctc gagcgcaccg cgtcagtaca cgagagccta tcggtgagag       180
     tggacgcgcc ttagtgtata gtgcgtgccg agcctgtgta acactacaca aaagtaaata       240
     ttaca                                                                   245
//
ID   Gypsy-43_SiCu-I repbase;    DNA;    INV; 4316 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4316
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5064-5064 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..4262
FT                 /product="Gypsy-43_SiCu-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSSTPHDPVDSDSSESQENPPPTNPHQPPPPNPKPKK
FT                 PRSTSKSRKPSTSSAPSTSTDSSAAPKTKTSATKPKPKKMGTVGTLAPFDP
FT                 LKDDFDMWYGTFENFVVANEIXDSARIIGLFLSSVGISTYTLLSHLLAPDA
FT                 PSSKSLKXLHQVLKDHFKPXPKAISERYKFSRRVQKQGESVHQFVAALRTL
FT                 XVNCQFKSDLEERIRXQFIFGLCNESAQRQLFTKHDTIDLKDVISIATAQE
FT                 AAEASTALVRGHPPTTAPPSTEQVNKTTRIKSQQQSSKFQKRNGNFKGTFN
FT                 NQQATSQDSKPKFKDNDDGHACNGCGSQSHSRANCPHRNSKCYNCDKTGHI
FT                 SSVCKGQRKKANNNHITADGDGWSXFDINMVNSSSSPSKKLITVDVKVNGV
FT                 LHTMELDTGCDVSTLSSTFYDKQLGRSPPLEDCKMVFRTYTGDTFTPLGKI
FT                 PVRLEHNGKTSAWLLPVTNGTSLFGKDLLKXFPINWSNVANQCNNVSASEK
FT                 VQLQTLLHEYSDIFRXPTAADKINGFQAHIIMKEDATPRFLKARPIPYAKR
FT                 EAVNKELDLMEKTGVLSKVETSDWASPLVVVPKSDGRVRITGDFKVTVNPQ
FT                 LCITQYPLAVPDDIFATISNGNLYSKLDGSNAYHQIEVDDKSKQFLVINTH
FT                 RGLYRYNVLPQGIASSPAIFQQFMDTMLRDIPQTGSFVDDSITTGTTDAQH
FT                 LCNLRQIFERMRQYNYKLSLNKCQFMEPSVEYLGHCISKDGIATTNAKVEA
FT                 IKKMPPPRDVSDCRSFLGLLNFYHKFLNDVSSECEPIYRLTRSDVPFEWSD
FT                 KCESAFSKVKKLLSTAPILAHYDPTKKIGLACDSSPFAIGSVLFHIEXDGT
FT                 ERPLAFASQLLNDTQRRYSQIEKEGLAIVISIKKFYKYLCARPFLLITDHR
FT                 PLVSIFGPKTQLPPFVATRLHHWCVFLSQFQYEVVYRKSKDHGNADCLSRL
FT                 VPASAAPXPTAAPLEATVNVVATEQLDVLPVTASKIRNXTARDPILSKILQ
FT                 LILYGWPPKLREEDKIIHPFFIRRHELSIVXGIIMWGIRVVIPASLQKKIL
FT                 QQLHDCHFGIVRMKSLARQHVYXPNIDQQIEEVAKSCVTCQQTAPSPPNSP
FT                 LHPWQFPEKVWQRLHIDLAGPFLNRSWFIVVDAHTKWPEVXCMHNDTTSAA
FT                 VITTLSEIFARYGLPEQIVSDNGRQFISNEFEAFLRSNCIRHVLSSVYHPR
FT                 SNGEAERFVRTFKEAMKSSEAPVDLRLQRFLLAYRSTPHSTTGSSPAELLQ
FT                 GRRLRTTFDLIKPDIATTTRTQQLNQEKGFNRNVKAREFAINSXVWVQTFV
FT                 KGEEKWSLGIIXEKIGPLTYNIKVGDRVIKRHVDQVRATYQARQPIPTERH
FT                 SPASXPTLPPSPSSSPTVEDLYQPEGHRD"
XX
SQ   Sequence 4316 BP; 1214 A; 1200 C; 875 G; 998 T; 29 other;
     aatggcgacg agtgatttct gtacagtcta aatagttcaa gttgccccaa ccctgccgca        60
     caaggaaaaa gtttaagttt ttccacatga gtagcacgcc tcacgatcct gtggactctg       120
     actcctctga atctcaggaa aatccaccac ccacaaatcc tcatcaacca cctccaccga       180
     acccaaaacc gaaaaagcca aggtcaacgt ctaaaagccg gaaaccatcg acatcttctg       240
     caccmtccac ttccacagat tcatcagcag caccaaaaac taaaacttca gccaccaagc       300
     cgaaacccaa gaaaatgggc accgttggaa ctttagctcc ttttgacccg ctgaaggatg       360
     actttgacat gtggtatggc acmtttgaaa atttcgtkgt cgctaacgaa attastgatt       420
     ccgctcgaat cattggtctc ttcttgtctt ccgttgggat ttccacctac actcttcttt       480
     ctcatctgct tgcccctgac gctccatcat ccaaatcact gaaggmcctt caccaagtgc       540
     tcaaggacca ttttaagccc gmaccgaaag ccatcagtga gagatacaag ttctctcgga       600
     gagttcagaa gcagggggaa tctgtccatc agttcgttgc agcgcttagg accctakcag       660
     tgaactgtca gttcaagtcc gacctggagg agaggatccg tgancaattc atttttggtc       720
     tctgtaatga gtctgcacaa aggcaactct ttacaaagca cgacaccatc gacctaaaag       780
     acgtcatctc tattgccact gcacaagagg ctgcagaggc aagcaccgca cttgttcggg       840
     gtcacccgcc caccacagca ccgccttcaa ccgaacaggt caacaaaacc acaaggatca       900
     agtcgcagca gcagtcatca aaatttcaaa aacgaaatgg gaacttcaag gggaccttca       960
     acaatcagca agccacatct caggatagta agccaaaatt taaagataat gatgatggtc      1020
     atgcatgcaa tggttgtggt tctcagtctc actccagggc aaactgtcct caccgtaact      1080
     cgaagtgtta caattgtgac aaaactggtc acatttcctc cgtctgcaaa ggacaacgga      1140
     agaaggccaa caacaaccac atcaccgccg acggagatgg ttggtcacwc tttgacatca      1200
     atatggtcaa ctcgtcctcc tcgccatcga agaagctcat cacagtcgac gtcaaggtca      1260
     acggagttct tcacaccatg gaattggaca ccgggtgcga cgtgagcacc ctcagcagta      1320
     cattctacga caagcaactc ggaagatctc ctccacttga agattgtaaa atggtattcc      1380
     gtacctacac mggggacact ttcacaccgc ttgggaaaat tccggttcgg ctcgaacaca      1440
     acggaaagac atcagcttgg ctcctccccg taactaacgg tacgtcattg tttggcaaag      1500
     atttattgaa acwttttcca attaactggt caaatgtagc gaatcagtgt aataatgtgt      1560
     ctgcgagtga aaaagttcag ttacagactc ttcttcatga atattccgac atttttcgtc      1620
     mtcccaccgc cgccgacaaa atcaacggat ttcaggctca catcatcatg aaagaagacg      1680
     ccactccacg ctttctaaaa gctcgcccca ttccctacgc caaacgtgaa gccgtcaaca      1740
     aggaactsga cctcatggag aaaactggcg ttctcagtaa agttgagacc agtgattggg      1800
     catctcctct cgtggtagtt ccaaaatcgg atggacgcgt gagaatcacc ggggacttca      1860
     aggtcaccgt caatcctcaa ctctgcatca cccagtaccc cttagcagta ccggatgata      1920
     tttttgccac gattagtaat ggcaatctct acagcaagct tgatggatct aatgcttatc      1980
     atcaaatcga ggttgatgac aagtcaaaac aatttttggt catcaatacc caccggggcc      2040
     tctacaggta caacgttctg ccccagggta tcgcatcgtc cccagctatc ttccaacaat      2100
     tcatggatac catgctgcgg gacataccac aaactggctc ttttgtggat gactccatca      2160
     ccacggggac cacagacgca cagcatctct gcaacctgcg ccaaattttt gaacggatga      2220
     ggcagtacaa ctataaactg tctctcaaca aatgccagtt tatggaaccc tcagtcgagt      2280
     accttggcca ctgcatctct aaagacggaa tcgcaacaac aaacgccaag gtcgaagcaa      2340
     tcaagaagat gccaccacct cgagatgtct ctgactgtcg atcattcttg ggtctgttaa      2400
     atttttatca taaattttta aatgatgtat ccagtgaatg tgagcctatt tacagactca      2460
     ctcgttctga tgtacccttt gagtggagtg acaagtgcga aagtgctttc agtaaagtga      2520
     agaagctcct ctccactgcg cccatcttag ctcactatga ccctacaaag aagattggtt      2580
     tagcttgtga cagctcaccc ttcgcaatcg gcagcgtttt gttccatatt gaagwagacg      2640
     gaactgaacg acctctggca tttgcttccc aactcctcaa cgacacccag cgtcgctaca      2700
     gccaaattga gaaggaggga cttgctatcg taatttcaat caagaaattt tacaaatatt      2760
     tgtgtgctcg tcctttcctc ctcattacag accacaggcc tcttgtcagc atcttcggtc      2820
     cgaagaccca acttcctccg ttcgtcgcca cacgccttca tcactggtgt gtgttcctct      2880
     cccaattcca gtacgaagtg gtgtaccgga agtcgaagga tcatgggaac gccgactgcc      2940
     tatcaagact agttccagcc tcagcagctc ctgmaccaac tgcagctcct ctagaagcca      3000
     cagtgaatgt ggtcgccacc gagcaattgg atgtgctccc agttacagca tcaaaaatcc      3060
     gtaackccac cgcacgtgac ccaatcctca gcaaaatcct acaattaatt ttgtatggtt      3120
     ggccaccaaa actccgcgaa gaagacaaga taattcatcc attcttcata agaagacacg      3180
     agttatccat tgtcmaaggg ataataatgt ggggcatcag agtagtcata cccgcctcgc      3240
     tccagaagaa aatcctacaa cagctccacg attgccattt cggcatcgtt cggatgaaga      3300
     gccttgcacg ccaacacgtg tackggccaa acattgatca gcaaatcgaa gaagtcgcaa      3360
     aatcttgcgt cacatgccaa cagacggcac ctagcccacc aaattctcca ctacacccat      3420
     ggcagttccc ggagaaagtt tggcaacgcc tgcacattga cctcgcggga ccattcctca      3480
     acagatcctg gttcatcgtc gttgacgcac atacaaaatg gccagaagta ktttgtatgc      3540
     acaatgacac cacctcagca gccgtaatca ctaccctgtc agaaatattt gcaagatatg      3600
     gtctacccga gcaaatagtg tctgataacg gtcgtcaatt tatttcwaat gaatttgaag      3660
     catttttgag gtctaactgt attcgacatg tgctttcttc agtktaccac cccaggtcta      3720
     atggcgaagc agaacgcttc gtccgcacwt ttaaggaggc catgaagtcg tcagaagccc      3780
     cagtggacct tagactgcaa cggtttttat tggcataccg ttccacccct cactccacaa      3840
     caggctccag cccagccgag ctcctccaag gcagacgcct gcgcaccacc tttgacctaa      3900
     tcaagccaga catcgccacc acaacccgca cccagcaact kaaccaagag aagggcttca      3960
     acmggaacgt taaggcaagg gaattcgcca tcaactcawc wgtgtgggtc cagacattcg      4020
     tcaaagggga agagaagtgg tcattgggca tcattkccga gaagattggc ccactcacat      4080
     acaacatcaa ggtaggggat cgtgtcatca agagacacgt ggaccaagtt cgtgccacct      4140
     accaggcacg ccaacccatt cccaccgagc gtcattcccc agcctcakca ccaaccttgc      4200
     cgccatcacc atcgagttca cccaccgtcg aggacctcta ccaacctgaa ggacatcgtg      4260
     attagtttta ggtttagctt ttcaawttat gtatgtgtcc ggttaggaag gaggtg          4316
//
ID   Gypsy-43_SiCu-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-277
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5120-5120 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 277 BP; 76 A; 71 C; 33 G; 92 T; 5 other;
     tgtagtatat ttgcataata tacaaattgt aacttatcag tcctaatcca tgacttctwg        60
     ttctgtctcc agtaaccgtc tggagaacca atttactcat tctctcwtgt atcatgccat       120
     tcatttataa gcatgtctct atgtgaattc kastcactct tgatccgtct ctcaagacat       180
     taaaasctaa ctgtactagg caaacaactc actcgctctc ttcggtcact tattgctatc       240
     gcacaactgc atcagcatct tcagcccata tactaca                                277
//
ID   Gypsy-43_SiOr-I repbase;    DNA;    INV; 4772 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4772
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 377-377 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..3450
FT                 /product="Gypsy-43_SiOr-I_1p"
FT                 /translation="MGKDKKLRKTSKRRERESRSKTRGEREKLKRSERRSE
FT                 RSKVHKRRARSTSESSDSESGKSRKRRAQSTSSSSDNESVYLKKQLKLLKK
FT                 EIDELRNKPSSSVTSSLSDEQSIPIFDSSRDDITVELWVSRVDSLAERYQW
FT                 SDDYIIRIIASRLKGHARQWYYEQTGNDVSWMEMKMGMLNHFRKSVPFSNL
FT                 LRDASNYEASSGQNLGDYCFKKLTKLRALKLNIPEEFLVDAVIGGIKDENI
FT                 VRTIRSAQIQSADKLYSHLNTLGNMPTLSVQNENLKFASTSNRFSKPSNLK
FT                 KNNTTSTNILKRKESTAVSCYNCGVFGHYARECRKPRLECTNCKKLGHIND
FT                 KCPLKISNVNTVTKINPKVSDHMFIKTVFINGHKSSCFVDTGSAKTLIKTS
FT                 TVKRYRLVVNDLKNNILRGFTGDTIICDKEVRISIRITEAIGIVDAIIVDD
FT                 NYLSHEILIGRDFIEQPHIIMIKKDSGVTFRNLPNWNETSVNVIDNFDNNV
FT                 LNLSDISFGKIKDHDKQKCLDLLNDFLDCISSSLKCLGKTNTLSMEIKTIT
FT                 DNPIVYHPYRLPEVEKRILRDIMADLLENNIIRESNSPYASPVILIKKKTG
FT                 DYRACVDYRRLNAITIKKRSVLPIIEEQIDRLGGYNFFITLDLAHGFYQIP
FT                 MSENSIEKTAFVTCDGHYEFLRMPFGLTNGPAVFQQLINTVLGNLKNTIAF
FT                 PYIDDIIIPAETIEEGFDRLKQVLTKLRQHKLTLKISKCEFFKTEISYLGR
FT                 EISSAGVKPGKHKLNAVLNIPRPTNVRQIRQFLGLSGYFRRFIKDYATLVE
FT                 PLTRLTRKDVKWVWGPNQEQAIAAIKIILTKEPILTIFNPKLKTELHTDAS
FT                 SIGVGAILFQFDDKGNRSVVSYFSKQTTNDQRQYHAYELETMAVVLALRHF
FT                 RVYLLGLNFKVVTDCNALKTTLSKKDLLPRIGRWWLEIQEFTFEIEYRPGT
FT                 QMLHVDALSRNPINEQETFTIDITESEWIIGAQLQDEQLRIIRKILEARTV
FT                 NNETKQYFKEYELKNEKVYRKLKNGTKSWVVPKAARMQICRLCHDDAGHLS
FT                 IEKTLQRIQQNYWFASMRSFVTKYVNACLNCAYYKHSGQNKKQCKLNPIEK
FT                 HPIPFHTLHIDHMGPF"
XX
SQ   Sequence 4772 BP; 1774 A; 792 C; 920 G; 1286 T; 0 other;
     tgtcagaagt gggattcata ccgtggccaa ataaatagtg cataaacgtg tgctttaatt        60
     taaatatttt tcttgaaaat gggaaaagat aaaaagttac gtaaaacgtc caaacgacgc       120
     gaacgagagt cgcgtagtaa gacacggggt gaacgagaaa agttaaaaag aagtgaacgc       180
     cgtagtgaac gatcaaaagt acataaacgt agagcgcgat ctacaagtga atcatcagac       240
     agtgaaagtg gtaaatcacg taaacgtaga gctcaatcta catcttcgtc gtcggacaat       300
     gagagtgttt atttaaaaaa acaattaaag ttactcaaaa aggaaatcga tgaacttcga       360
     aataagccgt cttcttctgt aacgagtagt ttaagtgatg aacaatcgat accgatattc       420
     gattcttcaa gagacgacat tacggtcgag ttgtgggtgt caagggtgga ttccttagct       480
     gaaagatatc agtggagtga cgactacatc atacgaatta tagccagcag acttaaagga       540
     cacgcacgtc aatggtatta cgagcaaaca ggaaatgatg tctcctggat ggaaatgaaa       600
     atgggaatgc tgaatcactt tcgtaagtcc gttccatttt caaatttatt gcgagatgcc       660
     tcaaattatg aagctagttc agggcaaaac ttgggggatt attgttttaa aaaattaaca       720
     aaactaagag ctttgaaact aaatattccc gaagaatttt tagtcgatgc agtaattgga       780
     ggcatcaaag acgaaaatat tgtaagaaca atacgatcag cacaaattca aagtgccgat       840
     aaactatatt cacatttaaa tacgttggga aatatgccca cactgtctgt ccaaaacgaa       900
     aatttaaagt ttgcttctac atcaaatcgt ttttcaaagc cgtcaaattt aaaaaaaaat       960
     aataccacaa gcacaaacat attaaaacgt aaagaaagta ctgctgtctc ttgttataat      1020
     tgtggagttt ttggtcatta tgcaagagaa tgtagaaaac ctcgtttgga atgtacaaat      1080
     tgtaagaaat taggccatat caatgataaa tgccctttaa aaatttcaaa cgtaaatact      1140
     gtaaccaaga tcaatcctaa agtatcggac cacatgttta taaaaactgt cttcataaat      1200
     ggtcataaat cttcgtgctt tgttgacacg ggtagtgcaa agaccctcat aaaaacttcg      1260
     acggtaaaac gatacagatt agtggttaac gatttaaaga ataacattct tcgtggattc      1320
     acaggcgata caataatatg cgataaagaa gttagaattt cgataagaat tactgaagcg      1380
     ataggtattg ttgacgcaat aattgttgac gataattatt tgtcacatga gatcttaatt      1440
     ggcagagatt ttatagaaca gccgcatatt ataatgatta aaaaagacag tggcgttacg      1500
     ttcaggaatc tccctaattg gaatgaaaca tctgttaatg ttattgataa ttttgacaat      1560
     aatgttctta acctgagcga tatttcattt ggaaaaatta aagatcatga taaacaaaaa      1620
     tgtttagatt tgttaaacga ttttttagac tgtatatctt catctttaaa atgcctagga      1680
     aaaaccaata ctctatcaat ggaaataaaa acaatcaccg ataatcctat agtttaccac      1740
     ccttatcgtc ttcctgaagt ggaaaaaagg attttgcgag atataatggc tgatttatta      1800
     gaaaataata taattaggga atcaaattca ccatatgcaa gtccggtaat tttaataaaa      1860
     aagaagacag gcgactaccg tgcatgcgtg gactacaggc gtttaaatgc tatcaccata      1920
     aagaaacgaa gtgtgttgcc tataattgaa gaacaaatag atcgtcttgg aggctataat      1980
     ttttttatca ctttagatct tgcacatgga ttttatcaaa tacctatgtc agaaaattct      2040
     atagaaaaaa cggcatttgt tacttgtgac ggtcattatg aatttttgag gatgccgttt      2100
     gggttaacaa atggccctgc tgtttttcaa caattaataa atacggtatt gggaaattta      2160
     aaaaatacaa tagcattccc gtatattgac gatattataa ttccggctga aacaattgaa      2220
     gaagggtttg atagacttaa acaggttctg actaaattgc gacagcataa acttacatta      2280
     aaaatcagta agtgtgaatt ttttaagacc gagattagct atttaggaag agaaataagc      2340
     tctgcaggtg taaaacctgg aaaacataag ttaaacgcag ttctaaatat cccaagacct      2400
     acaaatgtaa gacaaataag acaattttta ggattatcgg gatattttag aaggtttatt      2460
     aaggattatg ctactctagt agaaccactt acgcgcctca caagaaaaga tgttaagtgg      2520
     gtatggggtc ctaatcaaga acaagctatt gcagccatta aaattatact cacaaaggag      2580
     ccgatactta cgatattcaa ccccaaatta aagacagaac tacacacaga tgcatcctcc      2640
     ataggcgtag gggcaatttt atttcaattt gatgacaaag gaaaccgatc tgtagtatca      2700
     tattttagta aacaaacaac aaacgaccag agacaatacc atgcttatga gttagaaacc      2760
     atggcagttg tattagcttt acgacatttt cgagtgtatt tattaggatt aaattttaaa      2820
     gtagtcacgg attgcaatgc actcaagaca acactttcaa aaaaagattt attacctaga      2880
     attgggcgct ggtggctgga aattcaagaa ttcacatttg aaattgaata ccgacctgga      2940
     acacagatgt tacacgtaga tgctttaagt agaaatccga taaatgaaca agaaacattc      3000
     acaatagata taacagagag cgaatggata ataggagcac aattacaaga cgaacaatta      3060
     agaatcatac gaaaaatact cgaagcacga accgtaaata acgaaacgaa acagtacttt      3120
     aaagaatatg agctcaaaaa tgaaaaggtg tacagaaaat tgaaaaatgg tacaaaatct      3180
     tgggtcgtac caaaagcagc acgaatgcaa atatgtcgcc tatgtcatga cgatgcaggt      3240
     catttgagca ttgaaaaaac actgcaacgt attcagcaaa actattggtt cgctagcatg      3300
     agatcatttg tgacaaaata cgttaatgct tgtttaaact gtgcatatta caaacatagc      3360
     gggcaaaata agaaacagtg caaattaaat cctattgaaa aacatccaat tcctttccac      3420
     acgcttcata tagatcacat gggacctttt tgagacaagt acgaaaaaac acaaattttt      3480
     atttgtaata gtggacgcat tcacgaaatt ttgtatgata gagccagtta agaaccagag      3540
     aacgaaatac gtcaccaata tattaacgaa tttggtatat ttatttggtg ttccgagtcg      3600
     aataattagt gacaggggat cagcatttac gtcaaatgca tttaaagatt tttgtgaatg      3660
     ttacggtata aaacacgttt taaaatgcag ttgcaacacc acgagcaaac ggacagtgtg      3720
     agaggtacaa taaaacaata cttaactcgt tagcgacaac atgtgctggc aaagaagtca      3780
     atcaatggga ccaatatgtc aaacaagtgc aaagtgctat taatacgact cacaacaaat      3840
     ctattaatgc tacgcccatg gaagcattaa taggatttaa cacgaaacat gcagcagatt      3900
     cacgtatagt taacgaaatt cagcaggact tagatcgata tgatctaaag catttacgca      3960
     gtaaaatttc tgatcatatt acgaaagatc agaaaaaaca aaaggaacga tacgacaaaa      4020
     ccagacgaga tgcagtcaaa tataacgaag acgatttggt gatggtcaag ataacgagtg      4080
     agccagctac agggggaagc cataaacttc ttccaaagtt caaagggcca tttcgagtga      4140
     caaaagttct gataaatgac cgctatgaag ttgaagattt acgagatcat cgaaaatcta      4200
     cacgtacggt tgtagctgca gacaacatta agcgttggct aatctatcag gatgataggt      4260
     gagtcttaat aagcattagt acgagagatc aacggatctt tagtacgaga gatcgacgga      4320
     tctttagtac aagagatcga cggatcttta ctacgaaaga tcgacggatc tttactacga      4380
     aagatcgacg gatctttacg acgaaagatc aatggatctt tagtacgaaa gatcaacgga      4440
     tctttaccac gaaagatcaa cggatcttta ccacgaaaag atcgacggat ctttaccacg      4500
     aaagatcgac ggatctttac tacgaaagat cgacggatct ttaccacgaa agatcgacgg      4560
     atctttacga cgaaagatca acggatcttt agtacgaaag atcaacggat ctttaccacg      4620
     aaagatcaac ggatctttac cacgaaataa cggatcttac cacgaaagat cgacggatct      4680
     ttacgaccag gtgttaacat cttggtaagt tttcttttct tttctaggtc gctgtagagc      4740
     ctgaggacag gcttatatac aggatggccg ag                                    4772
//
ID   Gypsy-43_SiOr-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-259
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 411-411 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 259 BP; 80 A; 45 C; 53 G; 81 T; 0 other;
     tgtaagaaaa cgcagacgat gcagcgctcc gcttacgtca acgccaacgt gcatgggacc        60
     ttgtcgtaga cccattaaga ttattttgtt tatgttagga tttcggagag agactggctg       120
     atgaataggg agggccagtc gatagaccga cattgattgt accatacgaa tatttctgta       180
     ttctgttacg ttcaattatt atattaaaat actgttattt aaaaggtatt tcaataataa       240
     ataacccatt agtcttaca                                                    259
//
ID   Gypsy-43_SpEx-I repbase;    DNA;    INV; 5034 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5034
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4111-4111 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           410..1744
FT                 /product="Gypsy-43_SpEx-I_1p"
FT                 /translation="MAIPIKYLLLQKAELMYEVAIRGELPSDNVAGLRRQV
FT                 NKLTQLYSSDDIVDSVFQFLEDSKASQETLEKVKVNLDALKLNFDEPLFNR
FT                 TKAMLHHLYYRLQRIETPQTADDSAKLIKLKKSYEGYYEILLGLDKPKVRD
FT                 QKQAASSVTAEEELSDKSNSVGMNIAVSCDRGLLVELNKLKYDGKSCVRSF
FT                 IQKVEEFRMSKNITENKMLSSATDIFTGDALHWYRNIRGSVGGWNEVLTAL
FT                 KDDFDVPDYDYRMASEIRQRTQGEEENITIYLSIMQGMFSRLTKPLKEDEK
FT                 LEIILHNIRPSYSNIIAASPNIKSLEDLKLICRNYERIKVRSEFFKEPPSV
FT                 TANTLAPEFGYQSLKRKSTAGGQGNFYARKYEGAHQQGTHKVAEIQASETE
FT                 TSAISKFPYCHRCRVNTHSMRDCTAERKVFCFKCGMKEVRTPECPNCKPKN
FT                 "
FT   CDS           1690..4965
FT                 /product="Gypsy-43_SpEx-I_2p"
FT                 /translation="VWHERSSYTGVSKLQTKKLKTENCKTHAATHTDSSDW
FT                 NDWLMFVKNFFSRKDISTVLNVKPSNDPRPYARVGINKDLFLYGLLDSGSA
FT                 VTIIGKNSHELLIRLGLNLCSNERITVTAAGGQRIASLGYILLPLTFESKF
FT                 AIIKAHVIPAIETVLILGIDFWNTFNLCPKYLSEEENLFLTDPGLSEISSS
FT                 TSQHLCGYDVLNSSQKLVADRVVDLFKDISYTERGLGRTNVIKHRIDTGNA
FT                 EPIRQRYYRMSPEKQRIVAEQVDEMLALDVIEPCESPWSSPVLVVGKKDGK
FT                 PRFCLDSRKLNAVTRKDAYKLPYVSEILDNLKDARYLSSIDLSKAFWQILI
FT                 DEKDREKTAFYVPGRGTFMFKVTAFGLTNAPATQQRLVDLLFGPEFELKVF
FT                 AYLDDVIIISKTFEEHVELLQKVFKKLQSANLTVNLDKCHFFRGQLRYLGY
FT                 IVDAHGLRTDPDKVKAILDFPAPVNRKEVKRFLGTASWYRRFIPQFSTIAG
FT                 PLNKLTSNKKNAPAFQWTPEADKAFLELKAKLVQAPVLACPEFNLPFEVHT
FT                 DASNFGIGAMLAQTIDGIEHPIAYMSRSLTKPERNYSTTEREALAVLTALE
FT                 YWRCYLETDKTFLVYTDHSSLKWFMSLTNPTGRLARWGVRLSSFNFEIRHR
FT                 RGKDNVVPDALSRSVPVEAISDADVATAPVSDTKDSWYLKIFQGCQLNPIN
FT                 YPNYKVEDNELYRYMKTKVDLTVEFAWKKVIPKEQQEDILIKCHSEPISGH
FT                 FGVFKTYKRLALRFYWPGMYSSVVQFVSKCETCLAHKHCTHGVLGKMGRPK
FT                 DVSRPFQVLSIDLVGPLPSSRKQNQFIFVVTCCFSKYCLLFPLRRATSNLI
FT                 VKHLEDDVFLVHGIPQTIILDNGSQFISRDLDKLFKKYKVPNVHFTPKYTP
FT                 QINTVERYNRTIITAVSSFVDGDHRSWDSNLPEIQFAINNSVNESTGYTPS
FT                 FLVHGRELVVCGSHYLDFPDPTDLIFLPRDAYAANLGQLSPIFDKVQVALW
FT                 EAHVKNTQHYNLRRKHAEFNVGDIVWKRCYFQSDKDARFSKKLAPKFQKCR
FT                 VKVKRSPLVYVLEDMNGRDLGAWHIKDLKLRIYPS"
XX
SQ   Sequence 5034 BP; 1450 A; 989 C; 1048 G; 1547 T; 0 other;
     caatggcgcc caaaaacgtg gtttaaggtc tttcgtactt gcttggtcat tttagtggtt        60
     ctatgcggtg gtggtactct ttgtagtgtt tgtatgtttc acttaatttt ttttcaagac       120
     cataaataat tttggtattt agaagttagt tacaaaaaat tttgtggttt aattaccctc       180
     actactatta tcttacgcag tagttataaa attgtaattg tttaaattga agtaacttag       240
     ttgtttcacc tgacttttcc tgcttattat tttataattt gcttttggtg tttgtgttct       300
     ataaataaat tgtaacagag cggattttgc ttgacttata tgtgtaagta attgtgcata       360
     gcctacacag tttttataat tttttaacat agtttttgaa tcgatcaata tggcaattcc       420
     gattaaatat ttattactcc agaaagctga gcttatgtat gaagttgcta tacgtggaga       480
     gcttccctcc gacaatgttg caggattaag acgtcaagtt aataaattaa cacaattata       540
     ttcgtccgat gacatagtcg attcggtttt tcaattttta gaggatagca aagcctctca       600
     agagacctta gaaaaagtca aggttaatct tgatgcctta aagcttaatt ttgatgagcc       660
     cctttttaat aggactaaag ctatgttaca ccatttgtat tataggcttc aacgaatcga       720
     aacaccgcag actgcggatg attcagctaa attaattaaa ttaaagaaaa gttacgaagg       780
     gtactatgaa atacttttgg gccttgataa gccaaaggtc agggaccaga aacaggccgc       840
     gtcttcagtt acagctgagg aggaattgtc cgataaatct aattcagtcg gtatgaatat       900
     cgccgtttca tgtgaccgcg gactattagt agaactaaat aaactaaaat atgacggaaa       960
     gtcttgcgtg agatcattta tacaaaaagt tgaggaattt cgtatgtcta aaaatataac      1020
     agaaaataaa atgttaagtt ccgccaccga tatttttact ggagacgcac ttcactggta      1080
     tcgtaacatt aggggtagtg tcggtggttg gaacgaagta ctgactgcat tgaaggatga      1140
     ttttgatgtt cccgattacg actatcgcat ggcctcagag atacgacagc gtacacaggg      1200
     cgaggaagag aacatcacaa tttatttgtc tataatgcag ggcatgtttt ctaggctaac      1260
     taaaccctta aaggaagacg aaaaactcga aattatttta cataatattc gtccttccta      1320
     ctctaatatt atagcagcta gtcctaatat taaatcactc gaagatttaa aattgatttg      1380
     tagaaattat gaacgtatta aggttcgttc agaattcttc aaagaaccac cttcggttac      1440
     cgctaatact ctggctcctg aatttggcta ccagtctttg aagcgtaagt cgacggctgg      1500
     tggtcaaggt aatttttacg cgcgaaagta tgaaggtgct caccagcagg ggacgcacaa      1560
     ggtcgccgaa atccaggctt ccgaaactga aacttcggct atatccaagt ttccttactg      1620
     tcaccgttgc cgcgttaaca ctcactccat gagagactgt acggctgagc gcaaagtttt      1680
     ttgttttaag tgtggcatga aagaagttcg tacaccggag tgtccaaact gcaaaccaaa      1740
     aaactaaaaa ccgagaattg taagacgcat gcggctaccc atacagatag ctcggactgg      1800
     aatgattggc tcatgtttgt taaaaacttc ttttctagga aagatatttc tacagttctc      1860
     aatgtcaaac cgagtaacga ccctaggcct tatgcaaggg tgggaatcaa taaagattta      1920
     tttttatatg gtttgttgga ttctggttcc gccgtcacta tcataggtaa gaactctcat      1980
     gaattgctga tacgtctagg tttgaattta tgcagcaatg agaggataac tgttactgca      2040
     gcgggaggtc agaggatagc ttctcttggt tacattcttt tacctttgac cttcgaaagc      2100
     aaatttgcta tcataaaggc gcatgttata ccagcgatcg aaaccgtttt gatactagga      2160
     atcgattttt ggaatacttt taacctgtgc cctaagtatt tatcagaaga agaaaactta      2220
     ttcttaaccg accccgggct ctcggaaatt tcttcgtcga cttctcagca tctatgtggc      2280
     tacgatgttt tgaattcctc tcaaaaactg gtagctgaca gagtggtaga tcttttcaag      2340
     gatatctcat acacagagag aggtttaggt cgtactaacg tcattaaaca tcgtatagat      2400
     actggcaacg ctgaacctat ccgtcagcga tattatcgca tgtcaccaga aaagcaacgt      2460
     atagttgctg aacaggttga tgagatgttg gcgctagatg ttattgaacc ttgtgagagt      2520
     ccatggtctt ccccagtgtt agtcgtaggt aagaaggatg gaaagccccg cttctgctta      2580
     gacagccgta aattgaacgc tgttacaagg aaagacgcat ataagctgcc atatgtgtct      2640
     gaaattttgg ataatctgaa ggatgcgcgt tatctttcca gcatagattt gtccaaagca      2700
     ttttggcaga tattaataga cgaaaaggat agagagaaga ctgcgtttta tgttcctggt      2760
     cgaggaactt ttatgtttaa ggtcacggct tttggcctca ccaatgctcc tgctacgcaa      2820
     cagagacttg ttgacctttt attcggacct gaattcgagc ttaaagtctt tgcatactta      2880
     gatgatgtaa ttatcatcag caaaactttc gaagaacatg tggaactcct tcagaaggtt      2940
     ttcaaaaagt tacaatctgc caatcttact gtcaacctag acaagtgtca ctttttcaga      3000
     ggtcagttac ggtatctggg ctacatagta gatgctcacg gcttaagaac tgacccagat      3060
     aaggttaaag ccatattaga ctttcctgct cctgtcaata gaaaggaggt taagcgtttt      3120
     ttgggtacgg catcatggta tagacgtttt attccacagt tcagtacaat agcgggtcct      3180
     ctgaataagc tgacttctaa taaaaagaac gcgcccgcat ttcagtggac ccctgaggct      3240
     gacaaggctt tcctggaatt aaaagcaaaa ctagttcaag ctcctgtcct tgcttgccct      3300
     gaatttaacc tcccctttga agtgcacact gatgctagca attttggtat cggtgcaatg      3360
     ttggctcaaa caattgatgg catagaacat ccaattgcgt acatgagccg ttccttaact      3420
     aaaccggaga gaaactacag cactacagag cgggaggcac ttgcggttct tactgctctc      3480
     gagtactggc gctgttacct tgaaaccgac aaaacctttt tagtctatac cgaccactct      3540
     tctcttaagt ggtttatgtc tctcactaat ccaaccggtc ggctcgcaag gtggggagtt      3600
     cgcctttctt cttttaactt tgagataaga caccgccgtg gtaaagacaa tgttgtccct      3660
     gacgccctat ctagaagtgt cccagttgag gcaatttcag acgctgatgt cgctactgct      3720
     ccagtatctg atactaagga ttcttggtac ttgaagatct tccaaggctg ccagcttaat      3780
     cctataaatt acccaaacta caaggtggag gataatgaat tatacaggta tatgaagact      3840
     aaggttgacc ttacggttga atttgcttgg aagaaggtca ttcccaaaga acaacaagaa      3900
     gacattttaa tcaagtgcca ctctgaacct atctccggtc attttggcgt gtttaagaca      3960
     tataagcgct tagcacttcg tttttattgg cccgggatgt attctagcgt ggttcaattt      4020
     gtctcaaagt gcgaaacatg tctagctcat aaacactgta cccatggtgt cttaggaaaa      4080
     atgggtaggc ctaaggacgt ctcgcgtcca tttcaggtcc tctcaattga cctggttggt      4140
     ccgttgcctt cttctcggaa acaaaatcag tttattttcg ttgtgacatg ctgtttttct      4200
     aagtattgcc ttcttttccc acttcgtcga gctacttcga atttaatcgt taaacatcta      4260
     gaggacgatg tcttcctagt ccacgggatt cctcagacca ttatccttga taatggaagt      4320
     cagtttatta gccgagatct ggataaactc tttaaaaagt acaaagttcc caatgtacat      4380
     tttactccta agtacactcc acaaatcaat acagtggaaa gatacaacag aactataata      4440
     acggctgttt cgagtttcgt agacggtgat catagatctt gggactcaaa ccttcctgaa      4500
     atccaattcg ctattaacaa ttctgttaac gaaagtacag ggtatactcc atccttcttg      4560
     gttcacggaa gagagttagt cgtttgtggt tctcattacc ttgattttcc tgacccaaca      4620
     gatctaatat tcctgcctcg cgatgcttat gctgcaaatc tgggccaatt atcgccaata      4680
     ttcgacaaag ttcaggttgc tttgtgggaa gcccatgtca aaaatactca gcattataac      4740
     ttgcgccgaa aacatgctga gtttaatgtg ggtgatatcg tttggaagcg ttgctacttt      4800
     cagagcgata aagatgctcg ttttagtaaa aagttagccc ctaagttcca aaaatgccgc      4860
     gtgaaggtaa aacgatcacc attagtttac gtcctagaag atatgaatgg tcgcgatctt      4920
     ggcgcctggc atatcaagga cctcaagctt agaatatacc catcgtgagt tgtattgagt      4980
     attttttttg cggatttcaa ttagtcgaaa tccttttcct ggggaggggg gtaa            5034
//
ID   Gypsy-43_SpEx-LTR repbase;    DNA;    INV; 1043 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-1043
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4172-4172 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1043 BP; 289 A; 230 C; 186 G; 338 T; 0 other;
     tgtaacatag tgtacataac gtgcacctca cttaaattta ttatataaaa ttttccatat        60
     atttattata caaaaattaa tataaactat gtacctaatt atttgaaact aaatactatt       120
     aaataaacaa ataaagttaa aaaaaaatca agtaaggcgg acaccagcaa tgttttatat       180
     gtatatacgg agttaacctt gagttaacgg tttctcgttg cgcctgtcac ccggccgctc       240
     gccagctgtg ccggcgcgcg acgacatcac gacagtccgc agccaaacct ctcgaggcac       300
     ggacgctgtc gctcttatct cgcaccgata taccgtcatt gcggaaatat ttttttgtaa       360
     aatattttaa actatataat ttaatttttt tattaaaatt tcaataatta aaagtgtcgt       420
     taattcccaa acttgggtaa gttatgcaca attcagtata gtagatttct aaaggccgtt       480
     acctacctat tttgtattat attattatgt gtttaattta aggtgcgagt ctatatgaat       540
     tttgtagctt atttctatcc tgtgtgtaat gcttgccttc ccttcaatgt actatgcgta       600
     gtgtccttaa tgcttgtaac cgcctctgct agcgaacctg cacatcaatt attagtctca       660
     cgtttagaat tatttccgcc tctataggcc ctaatttgcc aatctagttc ttgccatgca       720
     tacctagcgt ttcccgtgca ccccttatat cggtagttta ctgacgtgcc ccttgtccct       780
     aggaattacg tcacggtttt acacgtaaga ccgtctcctg tacctgccgc cggtcgccgg       840
     actgaagtgg gttgccgagt accgagcata ccggattgcg cctggacaag cttaccggac       900
     tacgcctgga gggcttcgcc agggaagtgt ggaaggctag ataagtgcga taagacctag       960
     gcaaaccctt aaatcttatg aatataccct cacattttta tctaaaccta gttttatttt      1020
     gtacacgtcc tttctacgtg aca                                              1043
//
ID   Gypsy-43_TrNi-I repbase;    DNA;    INV; 4636 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4636
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 245-245 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4636 BP; 1517 A; 903 C; 883 G; 1333 T; 0 other;
     tcagaagtgg gatcagaccc actcccacat ttatctggga ctaccggcaa tttaattcag        60
     gaacaaatgt catatttttc ggctagtatg gaatctattt ttcgaagaat agcagacatt       120
     atgacacctc accatgtgac acccagtata cagtcaatgc tagtaccttt cgaccccgat       180
     gcaccagaag ccgacattat caactggtgc gcgttaagtg acatcgtaat taaaagtaaa       240
     aagctagagg gagtagacct tattttagcc ctcacgcact ccctgaaggg ccgtgccgcc       300
     atgtgtctaa ctaaaatcaa gccggataat atttcatggg ttgctattca ggaaatgctg       360
     atttcaaaat tttccaaacc catgacaatg caggatcatt ttgatttaat aatcaaattt       420
     caaattgata ataaagaaac cgcagctgag gcaggaatgc gattatggca acttatggaa       480
     aagattcctg atgcgaaatt accagatagc gtaatgaccg gttttgccat atctatcctg       540
     tcacagtgcg atggcaaaat tcgccgtgaa ctcaattctg tcgttataaa caacaaaaat       600
     caactcttcc gcacgctgcg cagcttctca ctgaagagga aaaatgaaga aacaagcgct       660
     tcagattcag atacaaaaaa aatccgtcac tcaacaccat ttcggggaat ttgtaatttc       720
     tgtgggaaaa tgggtcatcg agggcaggaa tgtcgcctta aacaacacat cgcttcaaaa       780
     ggcacacctt tttcagcaaa aactacacaa cctaaccccg gagtgtcctg cttcatatgt       840
     ggcgaggctg gccacgtggt caccgcgtgt cctaaacgct ggaagaagaa agaagacccc       900
     atgtcgagca acatcagcaa acaagtgaac ctgtgttcca gagcagcgcg tggtgtctta       960
     gaaataagtg gtatgcaatt tccttttata tttgattctg gatctgaatg tagccttatg      1020
     aaaaaaagta attgtgatct ccttactggt gtaaagtttc atgaacaagt gcttttaaag      1080
     ggggtaggtt ctagtaacgt tagttgctca cttcaaataa aatgtccaac cacggtacaa      1140
     aactgtgttc tcgatgttac atattatgtg ttacctgatg aatatcttaa tgaaaacata      1200
     ttattagggc gagatatttt agaccaagga atatctgttg tgatagatag cgcaacctta      1260
     tctttttcca aacataaaat ttccaatctc accactaaaa ttgaaatgcc tcttgatcct      1320
     aatttgattg ataccgatct tactggtaca gaaaaggaac gtttaattga aataataact      1380
     aaatattctt caaattttat acaaaatctt cccactacac gtattaaaac cggtgaacta      1440
     aaaattgatc tcatagatcc aaataaaacc gttcataggc gaccttacag gttatgcccc      1500
     accgaattag gaatagtaaa tacgaaagtt caagaattac tagatgccaa cataattcga      1560
     gaaagttctt cacctttcgc gagtcccatt ttattaataa aaaagaagga cggtagcgac      1620
     cgtatgtgtg tggattacag agaactcaat agtaacactc gacctgacag ctacccttta      1680
     ccactaatag tgatcaaatc gataagttgc atggggcctg ttttttttct agtttggata      1740
     tggcctcggg atttcaccaa atttgcgttc ataaggattc tgtagaaaaa actgcgtttg      1800
     ttacgccttc gggtcagttt gagtacttaa ctatgccatt tgggttacga aatgctccac      1860
     aggttttcca aagggctatt aatactgcac ttaaaccttt gaatgacgac aaaattttgg      1920
     tatacatgga tgatgttctt tctgcatcag taactgttca ggaagggtta gttcgcttag      1980
     atagattact ggatatattg tctaaagctg gagtttcttt taactttaaa aaatgttcat      2040
     ttttaaagaa aagaattgaa tatttgggtt tcgtaatatc ctctggagaa attagaccaa      2100
     atccccataa gatcgaagca ctaaaaaaca tccctcctcc atctactgct actcaggtcc      2160
     gacagtttat aggcttagcc acatattttc gacaatttat accaaatttt tcaaaattga      2220
     tgaaaccttt gtatccctta accgcgatca aaaagggcaa aattaattgg acccctaaac      2280
     ataatgatgt acacaagaac atcataaatt atctaatttc cgagccagtt ttgaaaatct      2340
     ttgatccttc tttacccatt gaactccata ctgatgcaag caatgaagga tatggggcta      2400
     tacttataca aaaaataata atttacctca cgttgttgct tattttagtc acaaaaccac      2460
     aagtgcagaa agtcgttatc attcatatga gttggaaaca ttggccgtag ttaaatctgt      2520
     ggaacatttt cgacattacc tatatggacg taaattcacg gtttttaccg actgtaacgc      2580
     cttaaaagcc tcacattcca aaaaggacct tacacctaga gtacacaggt ggtgggcaat      2640
     tttacagtca tatgattttg acataatcta taaggaagga aaaaatatgg cacatgcaga      2700
     ctttctttca cgtaatcatg ctgacacgtc tgttactaat aaaccggtta gaattgttaa      2760
     tttgtctgaa ctagacagaa gttggttgtc cgtggaacaa caacgggaac attaggcagg      2820
     gcatacttta ccgtaaaatc gaacgtaata aaaccactaa atggttacca atattgccac      2880
     actctttaac ctggtcaatg attgatcatg tacaccgcga aataaaacac cttggttttg      2940
     aaaaaacact cgataaatta tatgaccttt actggttcca accttgttaa gaaatttgtc      3000
     gattcttgcg tcgtatgtaa ggcttctaaa ggcccgtcgg gagcccagca ggttcgtcta      3060
     catccgatcc ctaaattggc cgttctgtgg catacaattc atttagattt aactggaaaa      3120
     ctcagcggga aaatcgagcg taaagaatat tgttccgtga tcattgacgc ttttacaaaa      3180
     ttcgtccttt tagagcatac cttaacctta aatgcatccg atgctattaa atcacttaaa      3240
     aacgcagtca acttatttgg tgcccctaaa agaataattg cagatcgtgg taggtcatac      3300
     gataatattg aatttaagaa tttttgtcaa gataattgta ttgagttaca cttaatagca      3360
     actggttcta gtagggcaaa tggtcaggtt gagcgtgtta tgagaacctt aaaaagtatg      3420
     cttactatag ctgaaacaga atcggatagc ttatggcaag atcatttagg cgatattcaa      3480
     ttggctctta atagtactcg ttgtagagta acaggataca cacccttaga gttaatgttt      3540
     ggtattaaag gtaactcatt aggaatttcc agaatatcta ctaatcctcc tgatgaagat      3600
     aggttaaacc ttgaaaccat tcggtccaat gcttctgcta atataaaaag gttggcataa      3660
     catgacacgg gtcgatttaa caagggtaaa actgtagtaa aacctttttc agtaggtgac      3720
     tttgtctttg ccaagtgcga ggaaagacac caaacgaaac tagaccgtaa atacaaaggc      3780
     ccctataaaa taaccgctat tttagaaaac gataggtacg aattaaagca cattaacggg      3840
     aacaatagaa tctacaaata ctcccatgaa aacttgcgag aagtaccccg tggtcagtca      3900
     ttcttttcag aaatcgctga aaattatgat gaggatgacg tgtcggcgaa taacaacaca      3960
     aaaatgcttg ttcatgaaac tagtcaaccg attgacaaag atgatattct atcagataat      4020
     tatgatacca tgtctgttaa tagcgatact atgtctgtta ataacgatac tacatttgtt      4080
     aatagtgata ctatgtctgc caatagcgat accgtgtctg ccaatagcga taccatgtct      4140
     gctaacagca ataccatctc tgtcagtagt gatactatat ccgctaaaag tgactccata      4200
     tttagccact ctcgtgatag tcgaaattgt agaaacactg gtctgcgtgc tgtttcagca      4260
     gagtctattg gtcctgaatc tattaatatt gttacaaaag cacttgtaca ccaactgaag      4320
     taaagctaaa ggaacaatac ttgttcggac tagctgggtc cggtccagtt taactgtagg      4380
     gacaaacctg aagggtaaag taattaccgg accagggatc taatcttgta gggtcagaag      4440
     ttggccggac caagaaatag gccttgtaaa gtcaaagctg actggaccaa gtgcatcaat      4500
     atctgaaggg tctaagtaga ccggaccaga aacaaaatca ggatggacaa acggtttctt      4560
     aattagattt tttttgtgtt ttagactaaa atttgtaaac tgagcgtacg aggacgtccg      4620
     cacgtcagta tggccg                                                      4636
//
ID   Gypsy-43_TrNi-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   14-DEC-2020 (Rel. 26.01, Created)
DT   14-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-439
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 199-199 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 439 BP; 114 A; 94 C; 90 G; 141 T; 0 other;
     tgtcggcgtc gcattgtaaa caactactgc atcaagccac gcggtggcta gctaagtggc        60
     gcgctacgac gtttccccac cactgtgggc ggagccgaga cgcgctacgt cgttacccca       120
     cctccaatgt tagcctataa aagacgccgc acagcggcaa gcgggcattc tgacttcagg       180
     cgtggctggg tgcacaggtt gtactattct ttaattgctc tgcttttctt tataatcatt       240
     gtaactgtac ttttgtattg ctgtggtact gggtgtcatg attattgtta tcatactgtt       300
     aaaattaatt atctaataag atacttgcta cataaaactg attaaagcta agtgaaataa       360
     gttctaataa atttaattcc tttcttgtaa agaattcgtt ttattttaca atactagtat       420
     gtctgatcca gtgccatca                                                    439
//
ID   Gypsy-43_TrVa-I repbase;    DNA;    INV; 9285 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9285
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 288-288 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1098..2723
FT                 /product="Gypsy-43_TrVa-I_1p"
FT                 /translation="MDQPISSFQTANTNLRWNSSSSVSAVILEKKSLRFST
FT                 VGTLRYFSVLKLPYFFSILFVFCNIVIMRPTHPHNTRYSARRRLMLDQNDQ
FT                 QSGARFQASPFIRNPFQPLSFGLNSFVPNSSMNVVPNEPSSSGESLAPPVD
FT                 NLNIPPVDNSHVDNSHVDNSHVPVNDNFRIIPHFDLSHVPPPNDVFQNHDL
FT                 LSLNHPPFQDHNQLNFNNPPPSVDVPPPMLNHLNPLNNGFIPQPEPLNGAS
FT                 SVQEDILHNVLSAIQSMKVSMDKKLNDFEGRLRNIQPNRQTNFQPSFQQGL
FT                 SHEINYRRERHGSQTSLNSNSSGRFHSNVQFKDLPVYNGEQLPIHPKDFLH
FT                 QVDFFFNSKATPDHVRLSELERLLTGNALNWFQVFRGSFEDYDDFHQKFLR
FT                 YFWGPNLQSSIRESLYTPNQYNGSIDMSAHFLAQVRKVQYLDDPIPESVMV
FT                 THLIKHFPDDVKCFLASTDTLSIDAVLFKLQNLDSIRPKMRPGVNKPSFPK
FT                 SNQNFKPQSQSQNVRCVISDGLCGDSVRSDACSAPDSSLNCHSATQ"
FT   CDS           2660..7177
FT                 /product="Gypsy-43_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FCSKRCLLGSRQFFKLSQCNSVREESTDSSAAVARNT
FT                 INSVFQKIMNQTFIYDITVSCSDHSDHSLSLLVSLPDKFYVPFSSFQLGKF
FT                 SVTCRLIAEFDPSSIHDNFVFLSNLKYSKFSFCVFLFPESLLISDFNQNTS
FT                 NFSNFPSDLMKKIAEETHLVLVDPLVCSPSKLSQQVETLALGNKIQSIISE
FT                 LPNVSFFDIGSLKFIPNRSTFQTFRSIIKSCLRLFIDLNAHFLYEPAKGNV
FT                 MSIKDEFLLDEPPVNNLKPLAKSPYVKVCVSNFEFNILLDTGSVVTLMSLD
FT                 FYESLKKFSNSNFETLPTTGLSLRGISGAKFKSVRFQAFIPLIIQDQVFFK
FT                 SFLIVDNINLPALLGSDFFSEYQAILNCHEKTLSLLDGKVKVPWTEFDSVR
FT                 VGCVSEEPSSPSNILFLTDSHGRNLSEILKPKFPNANVNIVCLPGAKFNDV
FT                 VSNLKLYSEKFSSEDVIVIIAGTNNLKSLKSNTDFKTEFDLSILEEVKTPI
FT                 LMVEIFPRFDKPFSDQISKISEFIIANLSCDQFKFLETSTLFEKSHFTRKG
FT                 VHLNLKGKIKLVESISSAMRFFFETNDSHLSLEPAQVNLTTVDDDDFITHD
FT                 GGSSEAQSSLSDKEINAVINPLKLSSKQKLKLSTLIKHNRDVFSDRPGRCN
FT                 LFQAKFRLKNEQIHIKRSYPVPFAKKEMVKKEIERMLSLGVIERSSSPYSN
FT                 PLVPVVKKDASVRLCLDARTINSKIVSDSESPQNIDEILSKFTNPVFISTL
FT                 DCTASFWQIPLHPDSRDITSFCFEGRNYRFTVVPFGTSVSMQMFIKATDLA
FT                 FGPEVDEFMSRYVDDFRVVSGTFEKHLEHLETIFSKIRKAGLTLKFSKCFF
FT                 CQEEIDFLGHVVSRNGIRMNPKKVRAIKEFPVPKSQKDLQSFLGLINFYRK
FT                 FSKDHSELCKPLLELLKKDSTFIWNANHQLHFERIKDSFINNVVLAYPIFD
FT                 RMFYINSDASLNAVAGELFQMDDEGNRRPIMFFSRILNAAERNYTVTELEL
FT                 LAIVSCCQKFRQFILGSPTTVMTDHHALTFLDRCILSHGRLTRWSLFLQAF
FT                 NLKVQYVKGKENVVADTLSRYPPQIDDLPPDNLELNVYFSKSQIVPDFSVD
FT                 SNSITNDQKHDQFFGKIYSKALAQGTNSHQNYCVFNNILFFKQSSENNWRL
FT                 CVPATLEESMINQAHISIGHFGPEKTYKYLKSFTFFPFLEKKVRKIVSTCI
FT                 LCQKCKAPNVKSHSPLTPILSDNKLDLLSVDIFGPLPVAKGNVRFIFVILD
FT                 IFSKFVKLYAIRNATGVNVTRKLLDCYVVEVGKPKAALADHGPCFKSKYWH
FT                 ENLKENDITPLHSSVFHPSANPVERYMRMIGNLCRIYCHNNHRSWIFFLPF
FT                 FEECINNTFSSSTDCIPSEVMFNKRINNFLESTLNFPPPLTGSPLVSNLEK
FT                 LRQKCQLEADRRKIQHDSKFKLITFNPGDLVLVKQHPQSNFGYGEAKKFFC
FT                 LYEGPFLVESRSCKNAYRIVHPETKSLVGVFSASLLRPFVS"
XX
SQ   Sequence 9285 BP; 2632 A; 1799 C; 1575 G; 3278 T; 1 other;
     aattggtgcc caaccgcggg acttgagtat ttaactcaag aaaccctcaa atttcacttc        60
     tacactttaa tttctttgtg tcgttttcga gtcgttggta accggcacgc cgccattaca       120
     ctcgctcgtg aatcgtcatt aatcaatcgt gagtgcttct catatgttca attgaagttt       180
     cgtgtgcgtg gaatcattct gttttctttt aaataaatta atcagtcaaa cagatctgag       240
     tgtttcaaat tagttttagt gatctcatgg tgtgatagtg ccgtaaagtt cctttgtagg       300
     cctattttgt tgttttggcg caaaatcgtc catcatcgac catactcatc gtatacttcg       360
     gttcgcgtgt aggaatcccg tgtcctttct gactcggtag tgcgggttgc atacccactt       420
     ttctacatcc tgtcacgtga ttccgcttaa cctctaataa taatatttct gttttgttca       480
     ttcgcgaatt tgttttggtg ttgaattgtt tacctacatc acacaaaatt tacgattatt       540
     cagcggacag tttgtttata ttatttaacc tatccattct taacattctg ttaaattgga       600
     ttgcatttta ttttaaaccg ttttgataaa aatatatgtg aagaaaataa ataaataaga       660
     aaataaataa ataagaataa atagattaat taataagtaa aataaacaac atacatataa       720
     ttcatgaatc aaagttgctg ttttatgctg gagacttcgt agaatttatg ggccaggtga       780
     ggaagaggtg cgaactatgc actcctgggc ttccgacgag ggtggactag cagtacaagg       840
     atatcatttc acatctttcc gtcactcact tgttcttcat ggattatgga taaggaattc       900
     tcaagaatgt caacaaaaaa ggatttaatt taattgataa agtcttctgg atgaatcggt       960
     tccagttttc cattggacct ggagaaatct tccaatgtag cttctgcata ctctgcgata      1020
     tttcaaaact gcttcggcat agctctcctt tcttatctcg gtgacttaca aggatcaagc      1080
     gtcgtcagtt tcataccatg gatcaaccaa tctcatcttt tcaaactgcg aatactaatc      1140
     tacgttggaa ctcatcttct tctgtttcag ctgtcattct tgaaaagaaa agtcttcgat      1200
     tctcaacggt tggtactctc aggtatttct ctgtgttaaa attaccttat tttttctcta      1260
     ttttatttgt gttttgtaat attgttataa tgagacccac ccatccccac aatactcgct      1320
     atagcgctcg gcgccgatta atgctggatc aaaatgatca acaatcaggt gctagatttc      1380
     aagctagtcc ttttattaga aatccttttc agcctttgtc ttttggcttg aactctttcg      1440
     tgccgaactc atccatgaat gtggttccaa atgagccaag ttccagtggt gagagcttag      1500
     ctccacccgt ggataattta aacattcctc ctgtagacaa ttctcatgta gacaattctc      1560
     atgtggacaa ttctcatgtt cctgtgaatg ataattttcg tattattcct cattttgatt      1620
     tatctcatgt cccaccgccg aacgatgttt ttcagaatca tgatttgctt agtttgaatc      1680
     atcctccttt tcaagatcac aaccagctta attttaataa tcctccccct tctgttgatg      1740
     tgccacctcc tatgttaaat catttgaatc ctttgaataa tggattcatc cctcagcctg      1800
     aacctctgaa tggtgcgtcc agtgttcaag aggatattct tcacaacgtc ctttctgcta      1860
     ttcagtctat gaaagtttct atggataaaa agttgaatga ctttgagggt agattaagaa      1920
     acattcaacc caatcgtcaa accaactttc aaccaagttt tcaacagggg ttgtcacatg      1980
     aaattaacta taggagagag aggcatggtt cacaaactag tttaaatagt aatagtagtg      2040
     gaagattcca ctccaacgtt cagtttaaag acttgcctgt gtataatggc gagcaactac      2100
     ctatccaccc gaaggatttt cttcaccagg tggatttctt ctttaattct aaagccacgc      2160
     cagatcatgt cagattaagt gaattggaac ggttgctgac tggcaacgct ttgaactggt      2220
     tccaggtttt cagaggttcg ttcgaagact acgatgattt tcatcagaaa ttcctacgct      2280
     acttctgggg accaaatcta cagagctcca ttcgtgaatc cctgtatact cctaatcagt      2340
     acaacggttc aatagatatg tcggcccatt ttttggccca agtgcgtaaa gtacaatacc      2400
     ttgatgatcc gatccctgaa agcgtcatgg tcactcacct aatcaaacat tttccagatg      2460
     atgtaaaatg ttttcttgcc tctaccgata cactttctat cgatgctgtg ctttttaaac      2520
     ttcagaacct cgattctatc cgtcctaaga tgaggcctgg agtcaataaa ccttcttttc      2580
     ctaagagtaa tcagaacttc aaaccccagt ctcagtctca aaatgttcgt tgtgttattt      2640
     cggatggact atgtggtgat tctgttcgaa gcgatgcttg ctcggctccc gacagttctt      2700
     taaactgtca cagtgcaact cagtaaggga ggaaagtact gattcctctg ctgcagtggc      2760
     acgcaatact ataaactcgg tttttcaaaa aattatgaat caaacattta tctatgatat      2820
     tacagtatct tgctcagatc actcagatca ctctctatca cttcttgttt cgttacctga      2880
     taaattctat gtcccgttta gttcttttca actgggaaaa ttcagtgtca catgcaggtt      2940
     gatagcggag tttgatccct cgagtattca tgacaatttt gtttttcttt caaatttaaa      3000
     atattccaaa ttttcctttt gtgttttctt attcccagaa agtttattga tctctgattt      3060
     caatcaaaac actagtaatt tttctaattt tccttctgat cttatgaaaa aaattgcaga      3120
     ggagacccat ctggtgctgg ttgatccttt ggtctgtagt ccttctaaac tgtctcaaca      3180
     ggttgaaact ttagctttag gaaataagat tcaaagcatt atctctgagt tacctaatgt      3240
     ttcattcttc gatattggtt cgttaaaatt cataccaaat cgatccacat tccaaacttt      3300
     tagatctatt attaagtctt gtcttcgttt atttattgat cttaatgccc attttcttta      3360
     tgaacctgcc aaggggaacg ttatgtccat taaagatgaa tttttattgg atgaacctcc      3420
     tgtaaataat cttaagcccc tagctaaatc accttatgtg aaagtctgtg tttccaattt      3480
     tgaattcaat attttgcttg acacagggag tgtagttact cttatgtcat tggattttta      3540
     tgaaagtctt aaaaaatttt ctaactcaaa ttttgaaact ttacccacca ctggcctctc      3600
     cctaagggga atatctggtg caaagtttaa aagtgtacgt tttcaagcat ttattcctct      3660
     tataattcaa gatcaagtat ttttcaaatc attcctgatt gtagataaca tcaatcttcc      3720
     tgctttactt ggaagtgatt ttttctctga atatcaagcc attctcaatt gtcatgagaa      3780
     aactttgtcg ctgctagacg gtaaggtcaa agtcccttgg actgaatttg actctgttag      3840
     ggtgggttgt gtttcggagg aaccatcatc gccttctaat atcctgtttt taactgatag      3900
     tcatgggaga aatttgtctg aaatattaaa gcctaaattt ccgaatgcta atgtcaatat      3960
     tgtttgttta cctggagcaa aatttaatga cgtggtaagt aatttgaagt tgtactctga      4020
     gaagttttcc tcagaagacg tcattgttat tatcgcaggt accaacaacc ttaaatcttt      4080
     aaaatccaac actgatttta aaactgaatt cgatcttagt atcctcgaag aagtaaaaac      4140
     tcccattcta atggtagaaa ttttccctcg gtttgataag ccattctctg atcaaatttc      4200
     caaaatcagt gaatttatca tagcaaacct ctcttgcgat caatttaaat ttttggagac      4260
     ttcaacctta tttgaaaaat ctcattttac tagaaaaggt gttcatctta atcttaaagg      4320
     aaaaataaag ttagttgaga gtatatcctc agccatgagg ttcttttttg aaaccaatga      4380
     ttcacattta tctcttgaac ccgctcaagt caatttaaca actgtcgatg atgatgactt      4440
     catcactcat gatggggggt cctccgaagc tcaatcgtcc ctgtctgata aagaaatcaa      4500
     tgctgtaatt aatccattga aattaagtag taagcaaaag ctgaagctgt caacgctgat      4560
     taaacataac cgagacgtct tttctgatcg ccctgggaga tgtaatctat ttcaggcaaa      4620
     attccgttta aaaaatgaac aaatccacat caaacgttcg tatcctgtcc cttttgcgaa      4680
     aaaggagatg gttaaaaaag agatcgaacg gatgctgtct ttgggtgtta ttgaacggag      4740
     ttcgagccca tattccaacc ctttagtccc tgtggtcaag aaagatgcat cggttagact      4800
     gtgtttagat gctcgcacca taaattctaa aattgtctcg gattccgagt caccgcaaaa      4860
     catcgatgag attctgtcaa agtttacaaa tcctgttttt atatcaactc ttgattgtac      4920
     agcgtccttc tggcaaatcc cgttacatcc tgactcaagg gatatcacaa gtttttgttt      4980
     cgaaggtagg aattaccgat ttactgttgt tccatttggt acatctgtct caatgcagat      5040
     gtttataaag gcaactgatt tggcatttgg tccagaagtg gatgaattca tgagccgtta      5100
     tgtagacgat tttagggtcg tttctggcac ctttgaaaaa catttagaac atttagagac      5160
     aatctttagt aaaatcagaa aagctggttt aaccttaaaa ttttcaaagt gttttttctg      5220
     tcaggaagag atagatttct tgggccatgt agtttctaga aatggtattc gaatgaaccc      5280
     gaaaaaggtt cgagctatta aagagtttcc agtacctaag tctcaaaagg acctacaaag      5340
     tttcttagga ctcattaatt tttaccgaaa attttccaag gaccactccg aactttgtaa      5400
     acctttgtta gaattgttga aaaaagactc tacttttatc tggaatgcca atcatcaatt      5460
     acactttgaa agaatcaaag atagcttcat taataatgta gttttagcct atcctatttt      5520
     tgacagaatg ttttacatta actccgatgc atcgctcaac gcagtggccg gggaactttt      5580
     ccagatggat gacgaaggaa acagaagacc gatcatgttt ttcagtagaa tattaaatgc      5640
     tgcagagagg aactacacag ttaccgaact ggagctcctt gcaatagtca gctgttgtca      5700
     aaagttccga caattcattc tgggttcccc gaccactgtg atgactgatc atcacgcgtt      5760
     aacatttttg gatcgatgta ttctttcaca tggacgcttg accagatggt ctctattttt      5820
     acaagctttc aacttaaagg ttcaatatgt caaaggcaaa gaaaacgtag ttgcggatac      5880
     tttgtcacga taccctccac aaattgatga cctccctcca gataatttgg aattaaacgt      5940
     ttatttttct aaatctcaaa ttgtaccaga tttttctgta gattctaatt ctataaccaa      6000
     tgatcaaaaa catgatcagt tttttggtaa aatttattca aaagcattag cccaaggaac      6060
     gaattctcat cagaattact gcgtttttaa caatatatta ttttttaaac aaagttctga      6120
     gaataattgg agactttgtg ttccagccac cttggaagaa tcaatgatta atcaagccca      6180
     tatttctata ggacattttg gtccggagaa aacatacaaa tatctcaagt ctttcacttt      6240
     ttttccattt ttagaaaaaa aggtcagaaa aatagtctca acctgtattt tatgtcaaaa      6300
     atgcaaagcc cccaatgtca aatctcactc tccattgact cctattttat ctgataacaa      6360
     gttagattta ctctctgttg acatctttgg tcctttacca gtagccaaag gaaatgttcg      6420
     attcatcttt gtcattttag atattttctc aaaatttgtc aaattatatg ccattagaaa      6480
     tgcaacggga gtgaatgtta ctcgtaagtt attagattgt tatgttgtcg aagtcggaaa      6540
     acctaaggct gcgcttgcag accacggtcc ttgttttaag tcaaagtact ggcatgaaaa      6600
     tctcaaagaa aatgacataa cacccttaca ttcatccgtt tttcatccca gtgccaatcc      6660
     tgttgaacga tatatgagaa tgataggaaa cctttgcagg atttactgtc acaataatca      6720
     taggagttgg attttttttc taccattttt tgaggagtgt attaataata cgttcagtag      6780
     tagtacagac tgtattccgt cagaagtaat gttcaacaaa agaatcaata atttcttaga      6840
     gtctactctt aattttcctc cccctttgac aggttcgcca cttgtgtcaa atttggagaa      6900
     attgagacaa aagtgtcaat tggaagctga ccgaagaaag attcagcatg actcaaagtt      6960
     caaactgatt accttcaatc ctggagattt agtcctagtc aaacagcatc ctcagtcaaa      7020
     cttcggttat ggagaggcga aaaagttttt ttgtctttat gaaggaccat ttcttgtaga      7080
     atctaggtca tgtaaaaatg cgtatcgaat tgttcaccca gaaactaaaa gtcttgtcgg      7140
     agttttcagt gcgtcactcc taagaccttt tgtctcctaa tttatccaaa ttctgcacat      7200
     tcatattttt tattctgttt atgttctgtg tactgtgtca tgtttcatgt ttcatgtttt      7260
     attttttttt tatctgtgca attttgccta gttattagtt ttttttttgt tttgtttttt      7320
     ttttctctct ctctctttag ctccccacct cttctcttac tcatcggaga tgaggggtta      7380
     acagagtcta ttttagccat catatcaatt ttaagaaaat tattctttaa aatatgttca      7440
     attttagttt taagtatgtc attttttttg ttcatccacg cacatcgagg tagaaaattg      7500
     tttcagctga gacaccacaa ctcaaccttt ttcaaaatat ttcttgttag gaatctaaac      7560
     ctcactttct tctgcaaata ttttggccct agaagctgat ttgcttcatt attagtgtca      7620
     atccagccgt agcctcaacc ctacatctag cttttgcata aaagagaatg gaagcgaacc      7680
     gtgattgacc cccatggtcc taaggcatta agttgctgat agacttcatg gtggtatccc      7740
     ttcatttttt ttgtatccat tatatatcac catataatgt aagtcccgtc ccatggtttt      7800
     gtttagacca actatttgtg gtctgcgtga gagtactcat ttccgcatca atagtaaatg      7860
     agcttggatc taataggctt aaaatagttc cattggtcat ggtcactttt gttttttttc      7920
     cccmattttt ttttatttaa tttgttgttt tgacgacgag tggtctctca gattcaatac      7980
     atcgaatggc tctatcctgt gcaagtatgt gtgagtgtat gagaaatcag gcactctagc      8040
     tgctttgtac caggcggagt cattctgggt attgaatgct ggaagtcttc atctctgaat      8100
     caaacaatag tcaaccaaac ctgcaagctg gtagtattac taaatgactg attgtttttg      8160
     tacctgacta gccaaagttt ctgcagaatt ttgactgatt gatggcagaa ctttcacgtt      8220
     atttgatgcg agtcttaaat tttgtgtttt attttttatg aggcagcgtt agtttgtacc      8280
     cgcatgtgtg ctgagttcca tgtggtatag gttttctctt tccctcgagg cattgattta      8340
     ttataatcct aaaacttcaa gcacaaccga gcgcaaggtt gaactcatag gattaattat      8400
     ttgttttccc tttatataat tttattcttc tgtacccacc agtctctcta aaaggacaaa      8460
     ttttctcact gtttgtctga tttttttttt atttttcctt ttttgtatcc actatctttt      8520
     cagattttat atcagccaga acaaaaagaa aggtctaaca aagaaattcc tttttgtctt      8580
     tttgtatctt tccatgtact tgggccctat tttttttatt tttgtattta gtaacttaag      8640
     ttttccaaat ttcccccatc ccttaaggat aacaaactta aactttgtct ttccactaaa      8700
     aaatttttaa ctccaagacc aagcaaaact gtaacatcga ccgacccaat tagctttaag      8760
     aactcaagta gaggtatttc tcttcttccg ttacttttaa agtaacgaac ttttttttta      8820
     cattctatga atgtttcaac aactagcttt aagtacactt ggaaccatat gtgatctcca      8880
     tcgtttttaa gttttacgag tatatttttt tttattttac tgacttcaag tcagtgttgt      8940
     aaatacgtta tgttttgtgt tatatgttat aaaaaaaaaa taataataat aataaatcaa      9000
     agagggactt atgaagcttg gggtttcatc gatcctaccg accaatagat cgataatgat      9060
     cgattctttt ctagtctcat cgttgactgt ggcttcgact atggtaggct tcctcgctct      9120
     ggtgctctgc tcattcttcg attcattttt actgttcctc ttcttctatt cttgtcttta      9180
     tcttcatctt tatctaccca tcttttatct atttcttcct tttcggagat taaaatcctc      9240
     agtcggatca agattttgac ccgtctgaga atttgagggg taatc                      9285
//
ID   Gypsy-43_TrVa-LTR repbase;    DNA;    INV; 560 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-43_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-560
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 347-347 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 560 BP; 121 A; 123 C; 122 G; 194 T; 0 other;
     tgtaacgtgg tcgattctcg ggatcgatca ccgagtacct ttcccttttt ttttctctgc        60
     tctctcacac ttcacaacta tatcgactat tctctctcta ttcttcctct agttattcaa       120
     atcttccgcc actaggttaa ctgcttgaat cggcgaatga ggggggcact ggagcgagaa       180
     tgacgtggct gttgtccgcc aatcagagat gagtgcttag cttcacctct gcttggcggg       240
     cagcggccat atttcttcac ttcgagtcaa agtgcgttag tgaacggtgt tccacaaaaa       300
     tgtgagtata aagttaattt aagggccagc ccttccggct ggtaccgggt tttttttatc       360
     aaaatgtaag ttcgtttaaa gtcggtaggg tcgagtgagc ttaagttttg ttttgtctct       420
     ttcaattttt cataaatgaa gtgaaatttg tctttttctt ttcttctttc gaaacgtcac       480
     cccacctgtt ggtggtggtg accacagaat ttgttaattc ttctaaatta tttgaagggc       540
     catgccgggg ctacccttca                                                   560
//
ID   Gypsy-440_AA-I repbase;    DNA;    INV; 5670 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-440_;
KW   Gypsy-440_AA-I; Gypsy-440_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5670
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5670
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5670 BP; 2060 A; 1078 C; 1058 G; 1474 T; 0 other;
     tggctgaccg tgccatggtt caagtgaagt gaagaaagcc tggacttact acaaaaagta        60
     aaaatgggat ggttttcaag tgatgaaatc atcacgaact cttcgactga gaaccattac       120
     cactatgcgc aaactgttgc gctgtgtgca ctagcagccg tggctgttgg gtacgttttg       180
     ttaagatcgt tgacaaaaat tcacctcgcc cacaccgaac gtgtggcaga acgagtcgcc       240
     agagttgtcg cgtcaccagc gtaaacgttg aaaagttgaa aagtgcaccc gtcaatggga       300
     gagagaagtg actatgtgaa gcaaaaactc aataaagtgt tttatgagac tacacctgtc       360
     aagtgcggaa cacctagaga agagaaaagt aaaaaatgca gagcagccgg aaaatgcgga       420
     acacctggag aaaagaaaag tgaaaatacg gagcagccgg agaagagaaa agtgcatccc       480
     catagttggg taaaaattaa taagcaacga agcagcaacc gacgagagat gcagacattc       540
     agcaaacaac aaagatgcaa ctcgaactga tgtaactgga cctggaacgg gaatcaacga       600
     gtattaaagg tacataaata gatttagata aatagtttag atagaagtga agtgaaaata       660
     tctttcaacg agtaatttca ataataagtt tagatggagg tgaagtaaaa atacctttca       720
     acgaataatt tcaatgaaga atattataaa ataaaccacg gtgattaaat caaaagctat       780
     ttcaacggtt atggtcgggg aattgaatag tttattagca ataaaaaagt ttcttttgga       840
     tgattccaat ttaaggaagt caccgaggat aagagcgcaa aaatttgaac aggccgtact       900
     tttagtggcc ataatcaaaa acaattataa gctagccatt aaaaattata acatcgaagt       960
     gtggcaaaag gctatcgata tttttagaga tataaaacaa ttgcaaataa tgccgtttga      1020
     tttgaaatcg gcaacatcga tcgttctgcc gtacgatgga tcgccagaac tacttgagtc      1080
     attcgttgac tcagcaactt ttttagatga gttgaccgag ccagcgaata aagcagtagc      1140
     tctaaagttt ttaaggacaa ggctcactgg caaggccaga ttgggtctaa ataacaacta      1200
     tgccgatatc acagcattag tgaatgatgt caaggccaaa tgcgaacaaa aaacctctcc      1260
     tgaggagtta ttggcaaaat taaacgccat caaagagagg gaccatgaaa aggtttgtga      1320
     cttggttgat tctttaacag ctaagttgtc ggctctgtac atggctgaca atattcccgc      1380
     cgacgttgct cataaaatgg caacgaaagc aggcgtggac acccttcaga aaaaaatcac      1440
     taatcatgac ttaaaaataa tcttgaaggc tgggtcattc acaacggtac agcaggccat      1500
     ccaaaaggtg cgtgaaaacg ccattttgga tgctccccaa caagttttat cgtaccgagc      1560
     aaacaccaga ggacgaagga atggaccacc gcagcagcaa agatatggtc cgccacagca      1620
     tcaaagatat caaaatcact ctggaaaccg tggaccaagg tttcaaaatt ttggcaatcg      1680
     cggcggtcga ggatcccgtt atcaatacac gcgtcaaaat tttggcaaca acaaccatcg      1740
     gcaaaatttt cctccgcgta ataacattta ctatgcggaa atgggaaacc atcaagcccc      1800
     ccaactgggt ggagtcgggg gaccggtaca aactcaaaac cacccgacac aaatgcacaa      1860
     ccagaatacg caaatgatgc cacagccagg tcaggtgtca attgcacaca tgttccagcg      1920
     ccagtaaaaa tttaccaaat cgaatcgaat tgttccaatt tcgtgtacat gaagttagga      1980
     ctatccgata cgatgaactt attactggtc gataccggag cagaaatttc tatattaaaa      2040
     cctggaaaaa ttaattcaaa tcagatcgtt aacactaatg agaaatgcac tataactgga      2100
     atcaataatc acacggtaga tacatttggt actgccatca cttcaatcag aataaatccc      2160
     caacatgaag ttatgcataa atttcaaatt gttcatcaag aattccccat agccactgat      2220
     ggaattcttg ggcgtgattt cttcacaaag tttcattgta aaatcgatta cgatgcatgg      2280
     attttaactg gaaatgctga tggtgaggat ttttaaatcc ctatcgaaga tcgaatgaac      2340
     ggagaatttg ttttacctcc acgatgcgag gtgtacagac aaattcacgt tgcagccgat      2400
     agagattttg ttatgccctc actacaaatt aaaccaggaa tattctgtgc taattctatt      2460
     ataaatgcaa gtagccaaat tgtaaaattg ataaatacca ctgacgaagt ggtgaaaatt      2520
     gacagcaaat tttatgattc gataataccg ctggaaaatt ttcacatttt ttctttaggt      2580
     caaactgaca agattgaccg aaatgaaaaa ttggaaaagg agttaaatct ttcaaacact      2640
     cctgaggaat gtaagccaca gcttgtaaat ttatgcagaa aatataatga tatttttgca      2700
     ctaaaaagtg atgcattgtc gttcaacaat ttttatgagc aaagaattaa cttaacggat      2760
     tccagcccgg tatacataaa aaattatcgg actcctgaat cacaacgtga agaaacgtca      2820
     aaacaaattg acaaaatgct gaaggacaaa ataattgagc cttcagttag tccgtataat      2880
     tctccgattt tattggtgcc aaagaaatcc acaacatgtg accctaaata gagacttgtt      2940
     gttgatttca ggcaacttaa taaaaaaata gttgcggata aatttccact acctaggatc      3000
     gatgaaatac tcgatcaact aggtagagcc cgatattttt caacgcttga cttaatgtca      3060
     ggctttcatc aaatccccct ggaagataat tccaaacaat atacggcctt ctccacaagc      3120
     aacggtcact accaattcac gcgtttaccg ttcggcctga atatttcgcc gaacagtttt      3180
     cagcgcatga tgacaattgc tttaagtgga ttaccacttg agtgtgcttt cttgtacatt      3240
     gatgacatta ttgtcatagg atgcacaatt gaacaccatt tgaaaaattt ggaacacgtc      3300
     tttgaaaaac taagatacta taatctaaag ctgaatccat cgaaatgtaa tttcttctgt      3360
     gctgatgtca cttttttagg acatcacatt tccgcggatg gtattcaacc agacaaaagc      3420
     aaatattcag tcatttctaa gtatcctact cctaaaaatg cggacgaagt tagaagattc      3480
     gtcgcatttt gtaactatta taggagattc atcccatatt tctcagaatt agcagcgccc      3540
     ctcaataaat tgctgcagaa aaacgtaaaa tttgaatgga cgacacaatg caatgatgca      3600
     tttgagtcgc tcaaggaaaa tttattaaaa ccacaaatat tgaagtttcc aaactttagc      3660
     aaaactttta tactatgtac agatgcctcc aaagtagcat gcggcgcagt tttgtcgcag      3720
     ttacatggag atgtcgaatt acccgtagca tacgcgagta gaacgtttac caagggtgaa      3780
     caaaataaag ctacgatcga acaagaatta ctagccattc actgggctat cacacacttt      3840
     agaccgtacc tttatggacg acgatttcta gtaaaaacag atcatcgtcc actggtctat      3900
     ttattctcca tgaaggatcc tgcttcgaag ctgacaagaa ttcgagtaga ccttgaagag      3960
     tacaatttcg atgtcgtgca tgttagtgga aaggaaaatg ttggtcctga cgcactttca      4020
     cgcatagaaa tcgattctga acaactcaag aatttatccg ttttgccagt tcaaacgaga      4080
     tccatgttaa agagaaaaac acccggatat gacgctacac agaaccatac agtgaatgag      4140
     actgatcacc tctgtgctta tgagtctgta aataacttgg atgcattcaa catgcctaag      4200
     ttaatctttg aatttgacaa caacctaata aatattagaa tcatgaacaa aaatatgaaa      4260
     aatgattttg ctctagcgca aattcattgc tacacaatcg atatcgaaat attaaaaaca      4320
     tgtttagaaa acgtggatat aatggccaaa aatttgaata tcaaaaaaat cgcaattgca      4380
     aacaacaacc tgatatttca acgagtaaat atgcagattt ttaaggaaat ctgtaataaa      4440
     acccttaaat tctcaaaaat tgtgctgtac acagctgcac aaattattac caacgcagaa      4500
     atcatcaata agcttattaa ggaataccac gataccccta ctggaggaca cgttggtgtt      4560
     tctagattat ataaaaggct acgttccaga tattactgga acgatatgct aaatagtatt      4620
     agattttatg ttagaaattg cattaagtgc ataaaaaata aacactatag acacacaaaa      4680
     gaagcattaa ctaaaacaaa tacaccaatg aagtgcttcg atacaattag cattgataca      4740
     ataggacctt tcacaaaatc acagagtgga aatcgatacg ccctaacagc tcaatgtgaa      4800
     ttgtcaaagt atatcataat cacagcgtta ccggacaaac aggcaaaaac attagccaaa      4860
     gcatttgtag aaaattgcat tcttgtgcac ggatgcccga gacagattaa atctgacatg      4920
     ggatcagagt ataggaatga agtttttgaa caaatcaata gactattaaa catagagcac      4980
     aacttttcca cagcttacca tcatgaaaca cttggaagtt tagaaagaaa tcataggtgc      5040
     ttgaatgagt ttttacgtgg caccgtcaat tcaaatcaag atgattggga tcaatggctc      5100
     ccatattacg cattcagtta taatacctct ccacactcaa gccatcaatt tactccgttt      5160
     gaattagttt tcggtcacca accaaattac ccttcttcta ttcaacaaac tcaatcggtc      5220
     gaactagttt ataactttga aaattatgta tcttaaatta aatttaaatt gcaaaccata      5280
     gcagccagag caagtaaatt attggattcc gtaaaatata aaagaattgc taataaccaa      5340
     ccaactacaa acccaataat cgttgaaata ggtgataccg tttggctcag gaaagaaaac      5400
     cgtaggaaac tagatcaggc atacagtgga cctttcaaaa ttatcaacca aaatcaccca      5460
     aacgtaacaa tagaagattc tacaggaaac aaacaaacag tacataaaaa tcggttaaaa      5520
     aaatgattat acaaaaagaa aaggaaaaat aagcatgaaa tgtaatgtaa ttaaatgtaa      5580
     gaataccaag agattcatag agaaagcgtt taaaattttc actaaggaat aatttcgatc      5640
     tgctacatta ttcctcccga agggggaagg                                       5670
//
ID   Gypsy-440_AA-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-440_;
KW   Gypsy-440_AA-I; Gypsy-440_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-288
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-288
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2073-2073 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 288 BP; 89 A; 67 C; 48 G; 84 T; 0 other;
     tgtagtatga atactttcat actgcagtgt tgcttgcgca acattgtgct tacaatattt        60
     tacccatgct cagttgttta attcgccggt ataaacatcc gtcgcgaagt taaacaacat       120
     aagcatattt taatcaggtc acccaagttg atgaccacac acagtaactc cgcgttccgt       180
     tctctatggg tctcgacaaa ccagttgaga gaataaaata tcattcgaca acctacagtc       240
     aaggcgtgaa gttcattcta tatcacccgt acaaacgaac ctattata                    288
//
ID   Gypsy-441_AA-I repbase;    DNA;    INV; 3945 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-441_;
KW   Gypsy-441_AA-I; Gypsy-441_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3945
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3945
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2051-2051 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 3945 BP; 1096 A; 966 C; 881 G; 1002 T; 0 other;
     gttggtgacc ccgacgtgat ttcgcggata agttaacgcg tcagtgaaaa tctcgttaaa        60
     atccggattc ggtttcgatc ggttcagttt ctggttacgt tacctaactt ccgccgattt       120
     ttcgccatgc cagataacga agttcaaaac gttgcgccgc aagctgccgt tgtgtccgtg       180
     aagcttccag aattctggaa aacggatcca gaaatgtggt tcgcccaggc ggaagcgcaa       240
     tttgtccttg cgaatgtcac gaaggacgaa acgaaattct accacattgt ggcgaaggtg       300
     gatcaatcgg tgatatgcca tatcgccgat cttgtgtcga caccacctca gcaaaataag       360
     taccaagcag ttaaagatcg actggtttct cgatttgctc tttcgccaca agtacgattg       420
     gaacgtcttc tgggttcctt tgatctcggt gacatgcgtc caacgcatct tttggccaag       480
     atgcaagaac tggccagcgg cctgaacgtt aacgaagagc tcctgaaaat gttatttttg       540
     caacggatgc cgtctaacat ccggcccata ttggccatca gcgacggtac gctggctaag       600
     ttggcggaaa tggccgacaa aatggttgaa tcgcctcaaa catctgcagt gtcttctacg       660
     ccaatcgtca acgagcagat ggaaaagatg aaggagcaac tagaggtgct tagcgcggaa       720
     tttcgtcgtt tgaaagccag cccatcttcc ggtccggacc gacgtcgtaa ccgctcagca       780
     tcacgcatca ggaatggagc agaaatatgt tggtaccacc gtaagtttgg ccaacatgcc       840
     gagcattgca aggaaccctg caaatacaat caatcaaaaa actaaattcc aacccatctg       900
     agtcggctga ggtgggtagt atgttttcaa gccggcgact aaagctattc gacaaaacaa       960
     gcggtattcg tttcctgatt gacaccggtt ccgacgtctc catcgttcca gcttcaagac      1020
     aagacaaact ctccgctccg attccgtttg tacttcatgc tgctaatggc tcggaaataa      1080
     aatcattttc gactaaattc attacaacgg atctcggcct cagaagacgt ttcacttgga      1140
     atttcctggt atctgacgtc agccatgcga taattggagc cgatttcttg gctcatttcg      1200
     gccttcttat cgatatgaga aacagaagcc tcatcgacgt caaaacaaac ttgcgatccg      1260
     ctggagaatt gatgatagct gatatccata ctatcaccac cgtcagttct gaacaccctt      1320
     tccacgagct gctaaaggag tatagagaaa tcacccttcc agccactatg caagccgaga      1380
     ctcaacatga cgtcacacac catattgtca ccaaaggacc ccccgccgca tcgaaggcaa      1440
     gaagaatgca cccagacaaa ctcaaagcag ccaaagaaga attcgctctt atgaccgaac      1500
     ttggaatatg tcgtccatcg agtagtagct gggcaagtcc actccattgc gtgatgaaga      1560
     agaatggaca atttcgattt gtcggagatt accggggatt aaataaagcc acagttcctg      1620
     accgttaccc ggtgccacac gtgcatgatc ttctgaactc cctgcaaggt aagaagattt      1680
     ttactacctt agacctagaa cgcgcctatc accaaattcc ggtggaggaa gctgacattc      1740
     ccaaaacagc cgttattacg ccttttggac tttatgaatt caccaggatg cagtttggct      1800
     tatgcaacgc gagccaaact ttccaacgct tcatgaataa gattctgggt gatttagatt      1860
     tcgtggtcac attcattgac gacgtttgca tcgcttccga gtcagcaaaa caacataagg      1920
     aacatgtccg cattgtattt gaacgactga aacagaacgg tctggtaatt aacgtatcga      1980
     agtgtaaatt tgcacagccc gaagtcgagt ttctaggcta tttggtaaac agcgacggaa      2040
     tcaaaccctt accctcaaga gtggaagcga ttactaaata cgaacgccca acgacagtga      2100
     aagagcttcg aagattcctg gcactgatca acgtgtacaa gcgattcatc ccaaaagcag      2160
     tagacatgca gttggatcta cggaagatga ttcctgataa ccgcaagaat gacaaccgaa      2220
     cgctatcgtg gaacgatcag acaacttctg cttttgaacg atgcaagact tctttagctg      2280
     aaaccgcgct cttgtattat ccagattcaa ctaaggattt agcactaatg atcgatgcgt      2340
     caaatactgc agccggtgcg gttcttcaac aatcatctgg gtcgtcttgg caaccgattg      2400
     gtttctattc agagaagttc acggattcac agaggaatta ttccacattt ggacgcgaat      2460
     tgacggctat gaagatggct gtcaagtatt tcagatattt cctggaaggt cgaaaattcg      2520
     tcatttttac cgaccataaa cctctcactt acgccatgac cacaaattcc tccagtaggc      2580
     ttccccatga agaacgatac ttgaagtaca tatcgcagtt taccactgat atccgtcaca      2640
     tcaatggtaa cgaaaacacc gttgctgacg ctctttcccg cgtggaaggt ataagtggca      2700
     ttgacctttc ggccatagca gaggatcaag cgaccgatga gcagttgaaa cacctgatga      2760
     aatcatcgac tcttaggatt gaacctgtcc gaatccccaa tatctctcgg cccgtttatt      2820
     gcgacgtgtc cttggaaaat cgtattcgac ccttcgtgcc agaaaagtat cgtgccacca      2880
     tcatgcagca ctttcatggt ctagctcatc cagggacgaa agccacaagg agactaatct      2940
     gcgatagatt cgtatgggcg tcgatgaatc gagacattaa caaattcgtt caagcttgtg      3000
     tcgattgcca gctatcaaaa ataaatcgtc acactatttc ggcattggct cagtttgatc      3060
     cacctaaatc tagatttcga catatacata ttgatcttgt aggtccattg ccgccatcga      3120
     aaggaaatcg atatgtattg actatcatcg atcgtttcac acgttggccc gaagcagtac      3180
     cattgcccga tatggtagcc cccaccgtgg ctagggcatt aacttcgatc tggatatccc      3240
     gattcggtac tcctgagacc ataacatcgg accaaggtcg tcagttcgag tcggatttat      3300
     ttcgtgagtt ggtttacatt ctaggatgtc atcacattcg cacaactgca taccatcctc      3360
     aagccaacgg attggtggaa cgtttccatc gaaccttgaa ggcagctttg atgtgtaaag      3420
     gaggaaatca atggagcgag gaactgccgt tagtactact tggtttaaga agtgcttata      3480
     gagaagattt gaaatgctct gctgctgatc tcgtctacgg ccagccattg cgcctacctg      3540
     gagaattttt cgatcctccc gcttcgaatg ttgaccgatc ggatttcgca aaggcactcc      3600
     atcagtattt ctcgaatttg cgggcaccca gaactcatca ccactccaag ccatcggtct      3660
     tcaaacacag tgcgctgaaa acttgtagtc atgtgtttgt tcgtgtcgac tcggttcgac      3720
     gatctctgca gcagccatac gaaggaccct ttcaggtggt aagccgcaac gacaaacatt      3780
     tcgaagtagt catttctgga aagaagcaga tcatttcgat agatagagtc aaaccagcgt      3840
     tcatgtgcga tcagcaaatc ggagatcacc caacagatga tacgcgaaca gtagttaccc      3900
     aatctggtca tcgtgtccga tttttggtgt aactgggggg gcgcc                      3945
//
ID   Gypsy-441_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-441_;
KW   Gypsy-441_AA-I; Gypsy-441_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2074-2074 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 232 BP; 66 A; 47 C; 56 G; 63 T; 0 other;
     tatggggtgt gatttgtgag cacccctatt gcagtgattt atgatcaccc ctgtcgcagc        60
     gcttcacgaa cattggagac agagtggaga atgaaaagtg gagacatctg tggcgccatt       120
     catgttgcgc caaccgaaga gtaaagaatc acgttcagac ttgtgaatag gaaataaagt       180
     agttatagat tcaattcggt gtattcattc ttaatcgctt ccgtccacca ca               232
//
ID   Gypsy-442_AA-I repbase;    DNA;    INV; 4326 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-442_;
KW   Gypsy-442_AA-I; Gypsy-442_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4326
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4326
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1503..4313
FT                 /product="Gypsy-442_AA-I_2p"
FT                 /translation="VHQSASKVVPEAYARPSYCPKRPVAYAALPKVDAELE
FT                 RLQNNGIISPVRFSDWAAPIVVVRKADNISVRVCGDYSTGLNNALECDRHP
FT                 LPHPDDLFAELAGARYFTHLDLSDAYLQVEVEEESRKLLTVNTHRGLFQYN
FT                 RLPPGVKSAPGAFQRIIDSMVAGIPGVKPYLDDILIAGRTKQEHDRNLHAV
FT                 LERIREYGFHLRLEKCRFALSQIEFLGHIVDKDGIRPDPSKTEVITMMQPP
FT                 KDVQQLRSYLGAVNYYGRFVKQMKKLRAPLDNLLKKDARWNWTDDCQHSFE
FT                 QFKTILLSDLLLTHYDPSKEIIVAADASKYGLGAVIMHRFPTGEVKAIAHA
FT                 SRSLTPAEINYGQVEKEALALIFAVTRFHKMLYGRHFLLQTDHQPLLKVFG
FT                 SKKGITVYTANRLQRWALSRLMSAQRRPDEDYVIAAVHVESEAKAILDDTI
FT                 SNLPVTHQMIVAETRKDPVLQQVVNFLQEGWPAHVEQIEDPDVKKYFARRD
FT                 GLQIVDHCVMFGDRIVVPLKFRKRIIRQLHRGHPGMDRMKSLGRSYIYWPN
FT                 VDDDVAQFVRQCTACAEAAKSPTKATLESWPLAVKPWQRVHIDFAGPIDGY
FT                 YYFVIVDAYSKWPEIFRTRSINTTATLDMLRETFSRFGNPNTLVSDNGTQF
FT                 TNVQFQLYCSENGIAHLRTAPYHPQSNGQAERFVDSLKRGLKKLSKGEGSP
FT                 TLEHLQTFLSVYRSTPNRNTPQSVSLAEAFLGRPVRTTLDLLKKPDPVAPA
FT                 VKNHKQNDQFNRRHGAVKRDFKEDDLVYVEQHSRNTKSWMPGRVIEQKGSV
FT                 HYIVSLDTNMRSKLVRSHVNQMRPRYDSDVPEPETQQLPWEILIEEVQSPV
FT                 AIARPAEAAPLQVPISAGLPMPASLEVDCPDEGASGTSPVPPIEAVEEIQS
FT                 APVAVSSDASGEFLRRSGRESRLPRWLSSYDFF"
FT   CDS           join(76..645,649..1596)
FT                 /product="Gypsy-442_AA-I_1p"
FT                 /translation="MADADLKNAILQLTNLIARQQQQIETQQHQIENLGHR
FT                 GNPIAGSEKIIESLASGIQDFQYDPDGGVFFDGWYARYEDVITQDGQSLDD
FT                 AARVRLLLRKLSTPLHDKYVNTILPNHPRDYSLEETVTKLKKLFGRLKSVF
FT                 HSRYQCLQYAKSEADDFTSYAAMVNKHCEAFQLSKLTADQFKALRFVCGLQ
FT                 LRDADIRARFISKLEADETAVNELGEATSKVTLENLVEECHRVANLKQDTL
FT                 MVENKEARNVNIVSRNLKNPLKSKSVPKTPCWKCGDQHYVRECPFASHTCS
FT                 RCKQQGHKEGYCSSNKSTAAKTFKHSKPKDNVKTRSIHTVRNIGSKRKFIP
FT                 VELNGVTVKLQHDSASDITIISRDTWISIGQPRTQPTEESAITASGGNLNL
FT                 LAEFQAEITIKNVTKTGRIFISDSAELNVLGIETMDLFDLWSVPITSLVNT
FT                 VQHRPDQHSDQHVSQLKQHFPEVFQNTLGKCTKAQVKLYLKPTHVLPIARR
FT                 DQWRTLHFPR"
XX
SQ   Sequence 4326 BP; 1145 A; 1196 C; 1055 G; 930 T; 0 other;
     tgctggcgac gagaaaaagt ttggaagcaa ctcgaagacc ctcaagattt tttcactcaa        60
     gtaccactca agaaaatggc agacgcggat cttaagaacg caatcctgca gctcaccaat       120
     ctcatcgcgc ggcagcagca gcagattgaa actcagcagc atcagattga aaacctgggg       180
     caccgaggca atccgattgc tggcagcgag aagatcatcg aatcattggc aagcggaatc       240
     caggatttcc agtacgatcc ggacggaggt gttttcttcg atggctggta cgcaaggtat       300
     gaggacgtca tcacgcagga tggccaatct ctggacgatg ccgcccgtgt gaggttgctt       360
     cttcgcaagc taagcacacc tttgcacgat aagtatgtga acacgattct tcccaatcac       420
     ccccgagact attccctgga ggagaccgtc acgaagctga agaaactgtt cggtcgactg       480
     aagtcggtct tccattcccg ttaccagtgc cttcagtacg caaaaagtga ggcggacgac       540
     ttcacctcgt atgctgccat ggtgaacaaa cactgtgaag cgtttcaact ttccaagctc       600
     accgcggatc aattcaaagc gctccgtttc gtatgtggac tccaatagct acgggatgcg       660
     gacatccgag ccagatttat ttcgaagctg gaagccgacg aaaccgcagt caacgaacta       720
     ggagaagcta ccagcaaggt taccctggag aatctagtgg aagaatgcca ccgcgtggcc       780
     aacctcaagc aggacacact gatggtggag aacaaagaag cacgcaacgt caacattgtc       840
     tctcgcaacc tgaagaatcc tttgaaaagc aagtcagtac ccaaaacgcc atgctggaag       900
     tgtggtgacc agcactatgt ccgtgagtgt ccgttcgctt cgcacacctg ttcaagatgc       960
     aagcaacagg ggcacaagga agggtactgt tccagcaaca agtccacagc tgcgaaaaca      1020
     ttcaagcatt cgaagcccaa agataacgtc aagacgagaa gcatccacac ggttcgcaac      1080
     attggaagca agcggaagtt catcccggtc gaactcaacg gtgtaacagt caagcttcag      1140
     catgactcag cgtccgacat caccatcata tcgagagata cttggatcag catcggacag      1200
     ccacgcactc aaccgacgga agaatctgct atcacggctt ctggtggcaa cctcaacctt      1260
     ctcgccgagt tccaagccga gatcaccatc aagaatgtta ccaaaaccgg tcgcattttc      1320
     atctcggaca gcgcagaact caacgttctt ggaatcgaga ctatggatct gttcgatctg      1380
     tggtccgtac cgatcaccag cttggtcaac accgtgcaac atcgtcccga ccaacattcc      1440
     gatcagcacg tcagtcaact taagcaacac ttcccggagg tattccaaaa cacgctgggt      1500
     aagtgcacca aagcgcaagt aaagttgtac ctgaagccta cgcacgtcct tcctattgcc      1560
     cgaagagacc agtggcgtac gctgcacttc ccaaggtaga tgcagaactc gaaaggctcc      1620
     agaacaacgg aatcatttct ccggttcgat tctcggactg ggcagctcca atagtcgtcg      1680
     tgcgcaaggc ggacaacata tcagtccgcg tgtgtggtga ttattcgacg gggctgaaca      1740
     acgcgctaga atgtgaccgc catccgctgc ctcatcctga tgacctcttt gcggaactgg      1800
     ctggggcacg ctacttcacg catctcgact tatccgacgc ttacctgcag gtcgaggtgg      1860
     aggaggaatc acgaaaattg ctcaccgtga acactcatcg tggccttttc cagtacaacc      1920
     gactgccccc tggagtcaag tcggcacccg gcgctttcca gcgcatcatt gacagtatgg      1980
     tagctggcat acctggagtc aagccatacc tggatgacat cctcatcgct ggtcgcacga      2040
     aacaggaaca cgatcgcaat ctgcacgccg ttctcgaacg tattcgtgag tatggttttc      2100
     acttacgtct cgaaaaatgc cgtttcgcac tctcccagat cgagttcctc ggacacatcg      2160
     tggataagga tggtattcga cccgatccat cgaaaacgga agttattacc atgatgcagc      2220
     caccgaaaga tgtccagcag ctccgctctt acctcggtgc tgtgaattac tacggtcggt      2280
     tcgtcaagca gatgaagaag ctccgggcac ccctggacaa tctgctcaaa aaggatgccc      2340
     gctggaattg gaccgacgat tgtcagcatt ccttcgagca gttcaagacc attctccttt      2400
     ccgatctgct gcttacccac tacgaccctt ccaaggagat catcgtcgca gcagatgcat      2460
     cgaagtacgg tcttggcgca gttatcatgc atcgattccc gactggtgag gtgaaggcta      2520
     tcgctcatgc ctctcgttcg ctgacaccag cagagataaa ctacggccaa gtggaaaagg      2580
     aagcattggc cctgatcttt gcggtcactc gtttccacaa aatgctctac ggacgccact      2640
     ttctcctaca gaccgaccat caaccacttc tcaaggtttt cggttcaaag aaggggatta      2700
     cggtatacac agcaaaccgc ttgcaacgct gggccttgtc ccgactgatg tcagcacaac      2760
     gtagaccaga tgaagattac gtgatagcgg ccgtgcacgt cgaatccgaa gcaaaagcaa      2820
     ttctcgacga caccatcagc aaccttccag tcacgcacca gatgatagtg gctgaaacgc      2880
     gaaaagatcc agttctccag caagtggtga attttcttca agaaggttgg ccggcccatg      2940
     tggagcaaat tgaagatcct gacgttaaga aatacttcgc tagacgagat gggcttcaaa      3000
     tcgtcgacca ctgcgtcatg ttcggcgatc gaatcgtcgt gccactcaaa tttcgcaaac      3060
     gcattattcg acagctacat cgtggacacc caggaatgga ccggatgaaa tcgttgggtc      3120
     gcagctacat ctactggcct aatgtggacg acgatgtagc gcaatttgtt cgtcagtgca      3180
     ccgcgtgcgc tgaagcagca aaatctccga cgaaagcaac cctggaatcg tggcccctag      3240
     cagtgaagcc gtggcaacgt gtccacatcg attttgctgg cccaatcgat gggtactact      3300
     acttcgtcat cgtggacgcc tactctaagt ggcccgaaat tttccgtacg cgatccatca      3360
     acacaactgc gacgttggat atgctacgtg agacgttttc ccgtttcggc aacccgaata      3420
     ctttggtctc ggataacgga acacaattca ccaatgtgca gtttcagctg tattgcagtg      3480
     aaaatggtat tgctcacctt cgtactgctc cttaccaccc gcagtccaac ggccaagcgg      3540
     agcgattcgt cgattccctc aagcgtggtc tcaagaagct tagtaaaggg gaaggctcgc      3600
     ctacactaga acacttgcag acattccttt ccgtgtaccg ttcaacaccg aaccgaaaca      3660
     caccacagtc ggtttctctg gcagaagcgt tcctagggcg accggtacgt actacgttgg      3720
     atcttttgaa gaagcctgat cctgtagccc cggcagtcaa gaaccacaag cagaatgacc      3780
     agttcaaccg tcggcatgga gcagtcaagc gcgacttcaa agaagatgac ctggtgtatg      3840
     ttgaacagca ttcccgaaac accaagtctt ggatgccagg tcgagtcatc gagcagaaag      3900
     gttccgttca ctatatcgtg tccctggaca cgaacatgag gtcgaagctg gtaagatcgc      3960
     acgtcaacca aatgcgccca cgctacgatt ccgacgtgcc agagccagaa acgcagcaac      4020
     taccatggga aatcctgata gaggaagtgc aatcgcctgt cgcaatcgcc agaccggctg      4080
     aagcagcacc actacaagtt cctatttccg ctggtcttcc gatgccggct tcactcgaag      4140
     ttgattgtcc tgacgaaggt gcatcgggaa caagccctgt gccaccgatt gaagccgtag      4200
     aagaaatcca gtccgcacca gtggctgtgt catctgacgc aagtggagaa ttcctgagac      4260
     gttctggacg tgaatcaaga cttccccgat ggctttcttc ctacgacttc ttctaagagg      4320
     gggaga                                                                 4326
//
ID   Gypsy-442_AA-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-442_;
KW   Gypsy-442_AA-I; Gypsy-442_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-174
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-174
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2075-2075 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 174 BP; 54 A; 36 C; 32 G; 52 T; 0 other;
     tgtagtaggc ctagcctaat ttgaatttat catggtaggc cgtgcctgta gattagaaaa        60
     taatatgtca ttagttagcc aaccaccaac caagcaagtt caataaaaca atagctcgta       120
     ccaacatagt cttttccttg gtaacgactt ttggccttgg ttacggctat aaca             174
//
ID   Gypsy-443_AA-I repbase;    DNA;    INV; 5280 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-443_;
KW   Gypsy-443_AA-I; Gypsy-443_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5280
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5280
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2154-2154 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5280 BP; 1659 A; 964 C; 1183 G; 1471 T; 3 other;
     gtggccgacg aggataattt ggtatccaaa ctggaaaagt gatttttagt gaattgtaac        60
     agtttccagt aagtgcgtgc atttgaatag tgaattttac acctcggcgt aagtatagtg       120
     tttttttccg aaaagtgacg aatttgagaa aataccgccg atttatttct ttggtcgggt       180
     tttcttagta attttctatt gttctgaggc atagttcggc tttcaatttc tccagaataa       240
     tagaaatttt cagccattgt gatcgtcgct acaaattgta attcggaata gagaacaatt       300
     gttccaaagc catttttttt tctctwctga caaaacagtt ggcttgggtt ctcacacagt       360
     caccattaca caaagcattt ttttaatttc attatattca actctgttca cacagtcggt       420
     ctaccgctca gttcagccct gcgcctacac ttgtgaaagg gaacgcggcg gaaaaaggaa       480
     cagtggtagt ggcaaccgac gctcgtcaga aaagtgagtg cctgaagagt tcatccattg       540
     aaaacaaacc gctcatcggc ggttggaaga aaactgcatc gaggtgcatc gtgcggttgg       600
     tcaatccaat caggaaggct atagaacccg gtgcatcggg gcaacgacga gtcttgacga       660
     atactgttgc tgctgttggg aaatcgctgt tgctgctgtt gggaaatcgc tgttgctgcc       720
     gttcggaaat cgctgttgct ggaaaatcgt tgttgctgct gttgaatatt cgctgttgct       780
     gctgctgctg ctggaccgaa agaaaagcgt ctacccgagg gaacgctgat tgtgtggagg       840
     ttatccggat ccgcttagtt gtgacgacta caggtatgtg atcaagtttt gtttttggcg       900
     tagcttttag acaaatttta gaccttattg catactgaga gtgttttgtt tacatttttt       960
     ttaaagcatg tctatggtta ctgctccgga tccttaccta ccaggatcca taccattttc      1020
     gcaatacctc gagcagctcg aatacatgtt cgagcacaat gaatatccag tagcgagata      1080
     taagacatca tttttggcag tatgtggcat tgaggtgttt accgaactaa aaaagctttt      1140
     tccggggcaa gatttgaagg cattaacgta caaacaaatg accgacaagt taaaaagtag      1200
     atatgataag gcagactcgg aggtaataca cagtttcaag ttttggacta ggaggcaagg      1260
     gaagtatgag aagtacgagg attttgttat tgcaatcaag gtgttagcag agaaatgtgc      1320
     atttggcgac ttcaaggata gagcgataag ggacatgtta gtgatcggtg tttacgattc      1380
     taatctacaa aaacgcttat ttgacgaaga ggacttgaca gcctcaaaag cagaaaaaat      1440
     aatccttaat caggaaatgt cttctagtag aacacaattg ctgaacgaag atgacaagag      1500
     aaccagcatc gtaaacagat taggtcctaa gccggaagcg ccaagaggta gacacaggag      1560
     ccgaagccga agttatgaac gcaacagcag gtctagatct ttctccagag gcaggagtga      1620
     taacaaatac cagaataaaa acagagatga cactaggaag ccttcatact tttgttcgtt      1680
     ttgtagaatg aagggtcata caaggaagta ttgctacaga ttgaatagga agagcccgga      1740
     cactggaaga tatagcgtaa agttcgttga ttcgccaaaa tcgaataaat cggaatccga      1800
     taaaaccgaa atttttaaac gactgaaaga caacatcagt acaagctcag atgaggagga      1860
     gacttcttgc ttgaatatcg ttacaaaaaa ccagagaaac gaaccatgtt atgtggaagt      1920
     caacattgaa aaacgacgtt taacgatgga ggtggattgc ggttcggcgg agtcagtcat      1980
     accagaggaa ctttttgcta gaaattttcg acatttggaa ttacggaaat gtaataaacg      2040
     gctagtagtc attgatggga acaagctgac agttttgggg aaagtcctgg tagaagttca      2100
     actaaatgga atgcagaagc aacttgattt ggtggtttta cgctgccaaa atgattttat      2160
     tcccctgatg ggccgctcgt ggttggacaa tttttttgtt ggatggcgat atacttttac      2220
     gagcatgaca ctgccggttg caaacatcgg atcgcttgat acagacaatt tggtcgacga      2280
     gattaaacgt aagtttccta tagtttttaa taaggatttt tcaagtccaa taaagggttt      2340
     cactggagat ttagttttaa aggaggataa acctattttt aagaaagcat atcaagtacc      2400
     gttgcgtctt cgccaaaaag ttttggatta tttggacgaa ttggagaaag atggagtgat      2460
     aacgccggta gaggcgagcg aatgggcttc tccagtagta gtgattatca aaaaggacaa      2520
     caatattcgg cttgtgatag actgtaaggt ctccattaat aaggtgatag tcccaaatac      2580
     atatccgttg cctttggccc aagatttatt tgctactctt tcgggatcaa aagtattttg      2640
     tgccctggat ttggagggag cgtacaccca attggttctg tccgagagat caaaacaatt      2700
     tttggtgatt aacacaataa aaggtttgta cgcctacaac aggttacccc agggagcctc      2760
     atccagcgcg gccatttttc agaaggttat ggaccaagtc ttggcgggtt tggaaaacgt      2820
     ctcgtgctat ctggacgacg tgcttattgc agggaaggat tttcaagatt gtatgaataa      2880
     gcttttgttg gtcttagaaa gactgtcaaa ggccaatata aaagtaaatt ttaaaaaatg      2940
     taattttttt gtcacggagc ttccctacct agggcatgtt ttgactgaca agggcttgct      3000
     tccttgtcct agcaaggtag aaactattcg gcaagcaaaa gccccagaaa atacttcgga      3060
     acttaaggcg tttttaggac tattgacatt ttacgccaag ttcatcccaa atttgtcttc      3120
     ccgcataagt tgcctttata ggcttttgag aaaggacgtt aaatatgttt ggaattttga      3180
     atgcaacaaa gcattcaacg aatgcaaaca gattctaatg aaaccaaacc ttttagaata      3240
     ctttgatcct tacaaacctg ttgtagttgt aacggacgcc tgcaattacg gccttggagg      3300
     cgttattgcc catgtagtag acggtgacga aagaccaata agctttgttt ctttctcatt      3360
     aaacgacgcc cagaagaaat accccattct tcacttggag gccctggcaa tagttagcac      3420
     tgtaaaaaaa ttccataaat atttatatgg aatgaaattt acgatttata cggatcacaa      3480
     accgcttata ggaatatttg ggaaggaagg aaaacatcct atttccgtta cacgtttgca      3540
     gcggtatgtg atggaattag ccatctacga atttgaaata atctaccgtc cgtcctcaaa      3600
     acttggaaac gccgactttt gctcgagatt tccactctca caagaagtcc caaaacattc      3660
     agctagagaa tacgttaaaa atctcaactt ttctgatgaa ttccccatta attacaaaga      3720
     agtggcggaa gggacttcca aggatgaatt cctgcaaacc ttactacaat acctaaggaa      3780
     aggttggcct gacagattgg ataagagatt tgttgacatt ttttctcact accaagatct      3840
     ggaggaagtc gatggatgtg tgatgtttca agatcgagtg atcgtaccgg aatccatgaa      3900
     acaaaaagta ctaaaactac tacatgtaaa tcattctggc ataaacaaaa tcaaacaact      3960
     ggctcgtaga acggtttatt ggtttggttt gaataaggac gtggaggatt tcgtaaaaag      4020
     ttgcagaatt tgtaatgaaa tgaatgtggt aacaagaaaa ccaccgtatt cgcagtggat      4080
     tgcaaccaat aaaccgttca gcagaataca tgctgatttt tttttacttc gaaaagaaga      4140
     catttttact agtagtcgac agctttacaa aatggattga ggtagagcac atgagagatg      4200
     gtacggatca cagaaaggtg atcaaggttt tcctacgtat ttttgccaga ttcggattgc      4260
     cagatacttt ggttaccgat aatggaccgc cttttaattc cgacaccttt gtcaagtttt      4320
     ttgagaacca agggattgaa gtactcaaaa gcccaccgta ccacccagaa agtaacggcc      4380
     aagcagaacg aatggtccgt ttggtaaagg atgcgttaaa aaaattgcta cttgacccgg      4440
     acattaggaa aatggacaca gacgatcaac ttacatattt tcttttcact ataggaatat      4500
     ttgtttgggc gaagaccaac atcaatttcc ctctgaaaaa cttttaagct ataagccaaa      4560
     aactctgttg gatttgatca atccgaaaaa tagtcccaaa ctaaaacgaa ccaacacaga      4620
     catacacgac acaacagaca attttgaatc caatgctaag catgatgacg atttggccaa      4680
     actaaaaagt ggtgatctga tactttacaa aaattttaac aatacagaca tcagacgttg      4740
     gttgcctgca aaatttttaa accaaaactc cgatactaca tttcagattt cgcttggcgg      4800
     cagaatcgtt ttggcacaca aacgccaact aaaattgccg caatcgcaac gttctcgccg      4860
     aaggaggatg tatcttgccc gtgaagaaag cgctccgtgt gaagaagacg gtcgcagttc      4920
     gaaaagaaga agggatkatg aagactccga cgaagacgaa ttttatggat ttccggcgga      4980
     atccttcatc tattcggacc atttgcatgg agatatcgag agtttccatg gtgttcctga      5040
     cwtttcggat gagcatggcg aaccgtcgaa tagagcagca gagggtccac caaaagtggt      5100
     ttcgaaaaga agttcgacaa gaaaaacaaa gaagagacgg aaggagggtt ttgtttacta      5160
     ttaaattatt agcatgaatt atttttatat gaaaagcata aagcttaaaa gtttcaaata      5220
     gaaatgtcga actagttata tttaagttac gcattgagtg ttcacttaag ggtgaaggac      5280
//
ID   Gypsy-443_AA-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-443_;
KW   Gypsy-443_AA-I; Gypsy-443_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-237
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-237
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2076-2076 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 237 BP; 86 A; 29 C; 65 G; 57 T; 0 other;
     tgtgatgtcc acgtaagggt tatattatag atacagtcga gcgagagcga gatctgaatg        60
     aagaagaact gaaatgagaa tgagagagga agagtaggaa aaagagaagt tcgaagctag       120
     atggtattcg gagattgatg gaataaatga gttcggtctg gactagcaag aagataagac       180
     gtgttcttta ttacgctgac tgaaagtagt ctgattcccc ataagctaaa cattaca          237
//
ID   Gypsy-444_AA-I repbase;    DNA;    INV; 5675 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-444_;
KW   Gypsy-444_AA-I; Gypsy-444_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5675
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5675
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5675 BP; 1712 A; 1153 C; 1421 G; 1389 T; 0 other;
     atttggcgca gtcggtagca tcgaacagag gtgagttagt ttttttttct cgctaaagtg        60
     cggtgacctt ttcgaatttt gtggcgcgat ggcggtggtt actgcatggg cagcgaacag       120
     aatagtaata ttttcctcag cgtatttttt tcttgtgaac aaaatggcgt acattgatgg       180
     atggaagcgt ttagctcgga agacaaagca gtagcttggt gcaatagtat ttatctatct       240
     atgatggtgt gagtgaagag ggggaagacc agaacgagag agtttcaaat catttgcatg       300
     aaaggggaaa gtggctgacg accactgtga agtgaggtta tttgcgggtc cggttcaaag       360
     ccgaagcgcc taccaacaca aaagcaatgc gagtccggat gatgaccgaa gcgcaccagt       420
     gtatttgttt ttccgttcaa atgtgatgtt cacgaagaaa agatgacaat gatcacacca       480
     ccaatgcgtg gttgacgacc acagcggagt gtaataattt gcgagtccag tctatgactg       540
     tagcgctcac caatacatga aagtgcgata caaaagcaat gcgagtccgg atgatgaccg       600
     aagcgcgcca gtgtatattt ttgtctattc aaatgtgttg tttgcgaaaa aggagagaaa       660
     tgcgatagga caataatcac accaccaatg cgtgattgac gatcagagcg gaggttttcg       720
     atttgcgagt ccagtccatg actgtagcgc tcaccgatac ataaaaagtg agtccggctg       780
     atgaccgaag cacgcatcga tgaaaccgtg gaatgtgttc gtgtttgttc tgttgattgc       840
     gagaccggct gaagaccgta gcgcttacta ccacattgaa aaatagcgag cccggctgaa       900
     gaccgaagcg cgtttgtaat tatggcgcgc catagtaacg cgtccgcgtc gcggcgcgac       960
     gcgatcagag cggatcctgt cgcgtcgcgc cgcgacgcgg acgcgttact atggcgcgcc      1020
     tatgaagtga aagtggaaga gcgagtccgg ttagaaaccg tagcgcctaa aatacagaat      1080
     ttagaagtaa aaacgagatc ggttgagggc cgaagagcgt tagggttgcg agccgccgaa      1140
     gttattatgt ttatacatga aataaacaag caaaatcaat cggaaaccgt cttattttgt      1200
     gtatgttatg aggaagtatg aacagtgaaa aaaactgaca atgagatagt ttttatattt      1260
     ttccgttttc ttaacccttc cgctactacg gtcgatgtta atgctggata tttaatattt      1320
     caatgccaga aagtttgcta atttgaggtc atgcttgatg ttacagatgg actcggacaa      1380
     ggactggcca ttggaaccat tcaacggttc tgtcgatccg tcggatttac gtcgcgaatg      1440
     ggaagaatgg ttcagagcat ttgaactgat tgtggagctc aggagaattg aatcccaaca      1500
     cgagaaactc gtactcctct tggcacgggg aggccgtggt cttcaacgaa tttattacaa      1560
     cttacgacca gtggctgatg aagtgaaccc agaaccggta caggttccgc taatgccagt      1620
     cgagacaccc gaatacgata acgcgataaa aaggctcagc aacttcttca tcggaaaacg      1680
     gaatgagcgc gtagagctgg aactatttcg ctcattgaaa cagtcagcca gcgaatcatt      1740
     cagccacttc atcctgaaat tacgaacgca agcagcacgg tgcgattttc gatctcgcga      1800
     ggaaattgaa attttgcatc aggtagcaat gggagcccga gacgagcgag ttagagataa      1860
     ggggctggag gacaccctgt cactagatga tttgactaac tacgcgatga acagggagat      1920
     gttgctgaag caaaaagaga aggcacgaca gctcaaaaat gatgaggacg ccgtaacagt      1980
     ggctactgtt aaacaagaat ggaagggcaa gcgagtccca tcaaacgttg gagtccgtga      2040
     acgacgctgg gatcaaggca agcgcagtgg gctcgaatgt gagaactgtg gatcatggaa      2100
     gcaccagaag aattcgcgtg aatgctccgc tcgaggagcc cgatgcaaca actgtggccg      2160
     tttgggccat tatgctagaa agtgcagatc aagaagaaac atggacatga agaccggtaa      2220
     ccacaacggc atcggaaacc gaaaccgaaa attcagcgaa gcaaactctc tgcgagaggg      2280
     agatcgtatc cgctatcgtg agcgaactga acgacgcgaa tcatcggaat caatgaaggt      2340
     agaataatta tttctctcat tatttttatt attaagctat atgatttcca ctcaacattc      2400
     ttgagtactt tgagggtttg tagaatcttg atgaattagc ttgtagtcgt atgaaataga      2460
     aatgaaagct acatgttaaa atggcgaaga gaataaatgc gttttatttt acaaattttc      2520
     tcccgctaaa tataggtgtg caaaatagat gacggagtga taacctgtaa aattgataaa      2580
     tatcctgtgt ctttcctgat tgattccggg gcggccataa atacaatcac tgaacaagat      2640
     tggaaaacgc tcgccaacag cggcgcaaag gtgtacaaaa aacgatatga ctgcaaccgt      2700
     cagttcacgg catacgcatg ccaagaacct ttacaggttc taatgatttt cgaagcctgg      2760
     atttccatta acgaaaccaa gcctaaatgc tacgcagagt tttttgtcat ccaaggagca      2820
     aaacggtctt tgctatccaa gagaactgca gaagaactta aagttttaaa agttggcctc      2880
     gatatcacaa acatcgagat taagaacgat gttttcccga aatttccaaa tgtgcaagtt      2940
     aaactttcca ttgatcctaa cgttccgccg cggaaaattg catatttacg gattcctgtg      3000
     gcgatggaag ctaaagttga tcagaaaatt cttcagatgt tgcgaagcga tgttatcgaa      3060
     cctgccctcg gaccgcctga atggatttca cccatggttg tagtccctaa aggtagggat      3120
     gatatccgtt tgtgcataaa catgaaatat ccgaatcaag ctatcaagcg cgaacattat      3180
     ccacttccca tgatagacac tctcctgaac aagcttcgag gatccacata cttttctaag      3240
     atcgatatta cgtccgcttt ccaccacatc gagcttcacc cggaatctcg tgcaattacg      3300
     acattcatga ccggcagagg actcatgagg ttcaaaagac tcatgtttgg catcaattgt      3360
     gccccagaga tttttcagcg agttatgacc gaaatgcttg ctggaatcga aggaataatt      3420
     gtatacattg acgacgtcgt tgtttcagga agagatcgga aagaacatga cgctagattg      3480
     caggaagttc tggcagtact agaagataac aacgcgatgc tgaataagga gaaatgtatg      3540
     ttcggcgtaa agaagcttga gattttggga tacgaggtca gcgcggctgg cataagtcct      3600
     tctgaagaaa agatcaccgc aatccgaaac ttcagatgtc cggaaaccaa agaggaggcc      3660
     cgtagctttc ttggacttgt aaactttatc ggacatttca ttccggatct ctcaaccaga      3720
     acagaaccgt tgcgtaagtt catcagggga gatgtttctg attttggagt agctcagcta      3780
     gaagcgtttg aagatttgcg gaacgagata tcaaacaatg ttcagaaact tggtttcttc      3840
     gatcctgtag acagaactga attatatgtc gatgcttcac cagtggggct tggagcagtt      3900
     ctgacacaaa aggatggtcg taatgcagcg cgaatcgtaa gctttgcttc caagggtttg      3960
     acaaaggccg aacgaattta cccgcagact caacgagaag cgctggccgt agtgtgggcg      4020
     gttgaaaagt tttatccgta tttgtttgga acaaaattca ccgtcttcac agaccataaa      4080
     acgctagaat atatatatca gggaaaacat cagcatggaa agcgagcatg taccagagcc      4140
     gaaggttggg ctttgcgcct tcaaccttat aattttacgg tgcagcatat cccgggatat      4200
     accaatatct cggatatttg ttcccgtttg tgcccgccga cagaaatacc tttcgatgaa      4260
     agcacagagc attatttgtg ttctattggc gaagttccaa atgctatcac gctacacgaa      4320
     ataaagaccg aaacatctct cgacgaaaca atgtcggcag tcattgaagc tattcggact      4380
     caaagttggc caaaagagct atttcggtat caggcgtttg caaaagagtt gggagtaatc      4440
     aaagacatag tggttagaga agataggata attctgccac agaaactacg tcaacgggct      4500
     ttggaaatcg ctcatcgagg tcatccaggc attgtggcaa tgcgtcggaa tctccgcgaa      4560
     aaggtatggt ggccatgcat ggaccgcgac gttggagaat atgttctgca atgcgcaggt      4620
     tgtgctgcgg tgagtgggtt ggatgctccg gagccaatgc aacgaaagtt aatgccagaa      4680
     cgagcgtggc aagaaattgc aattgatttt ttctccgcga aagagtgcgc tacgtttctc      4740
     gttctcatcg actactacag ccgttttaca aaagttattg aaatgaaagg taccacagcg      4800
     agaaagacta ttgaagccct agaaagcgtg ttcatcgagc aaacatatcc ggaatcgatt      4860
     agaagcgaca acggacctcc gttttgttcc gaagagttct cgcaatattg cgtttccaaa      4920
     aatatccggc ttactaagac catcccatat tggccacaaa tgaatggcct tgttgagcgg      4980
     cacaaccgag gtattctgcg agctttgaaa attgctaaag ctactaaaga ggattggcga      5040
     aaagcgatta gagactatga atttatgtac aacacgacac cgcattccgt aaccgggaag      5100
     gcacccttag aactgctgac aggaagacca gtcaaggatc tgctgccttc cctgcggact      5160
     gaaccgtttt ggatacggga cgacgaaact agagataatg acgccatcaa aaagatgaaa      5220
     gggaaaatct atgctgacaa ccggaggaac gcgaaagaat ccgacattga ggtgggcgat      5280
     gatgtgatgg tgaagaatta tgaatcggga aagctagagg cgaatttcaa gctggagaag      5340
     ttcaaagttg caaaaagaaa gggaagtgat gtgaccgttg caaatgagga aggggtgtcg      5400
     tatcgtcgcc ctctcggtca tttgaaaaag tggccatcaa atcgcaaaac acctgtggct      5460
     gctgaacaaa cagaagagtt gccttcatca aacccagtag ccagtccgaa aagtaagaaa      5520
     cgagatcagg atcatctggg tagctcttct atcaaccggc ccaagcgaac aaggaaattg      5580
     ccagcgaggt atgatacgac gtttgaatga acaacattga gcgagcattg atactttttt      5640
     tttgttgttt tttttttctt gcaccacgaa aggga                                 5675
//
ID   Gypsy-444_AA-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-444_;
KW   Gypsy-444_AA-I; Gypsy-444_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-290
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-290
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2077-2077 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 290 BP; 82 A; 57 C; 71 G; 80 T; 0 other;
     tgtagagtcc agaaataaaa caaatcaaat ttggatcgac ttttaatctt tatcttctaa        60
     ttctgccctt gaattgatgc ccttccatcc gagagtgcac ccctggttat tgctggtaag       120
     ctagaagagg aggagggaga tacatgctac ttgaggtgaa gacttttgag cggcagttga       180
     gtttgaacct ttggcaagag tggatgccaa tccccatacg tcttcgtgca tataagttta       240
     ccggtcgacg agtgtaaaag ggcggacgcc gaaataatca ggattctaca                  290
//
ID   Gypsy-445_AA-I repbase;    DNA;    INV; 5495 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-445_;
KW   Gypsy-445_AA-I; Gypsy-445_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5495
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5495
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-JAN-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5495 BP; 1799 A; 1025 C; 1235 G; 1436 T; 0 other;
     atggcgcagt cggtcgggac catggcacct cgttttctgg acctttggct cccacaaagt        60
     aagttttgag aattgtttta tgagggctcc gatggaaata ggcggagctc aaacaataag       120
     acgaaattcg atggagatag acgaatttcc aaaaaaaaaa aaaaacaacc tctggtggaa       180
     aaagacagag tgttgacaat agaaaactga gttataaaaa ggctaattga agtgtttatg       240
     attcgttaca gaacgccatc gaagaaaacg attttgaagg aactgaagga ggccctcgat       300
     aggaacaacg tacttcgtga gcaagtagct cacctgacgg ctggttttgg aggtgatcat       360
     caagtgtttc ccaacacagc tcgcccagat ggtcttcttc tttctactat gaacagttgg       420
     tcactgggat ctatgaatat tccggaatgt actccatcag aaggagaagt agaggttgac       480
     aagcgagctt tcgagtactg gaaggatatc ctgatgtcat cactacagtt ggcgaatgct       540
     actgatgagc aggtgaaatt tggggtcttc aagatcaagt caggacccaa actgcgagaa       600
     atactcctta cgacgactac tcgaccagga atgcccgacg aaagaatcgc tccgttctca       660
     aacgcattag ctcgacttga cgagtactac gggtccagag cgtacacatt gtcacaacgt       720
     ggtaaaatga tgatgatgtg tcaaagcgct tctgaagaca gcattgcatt tgttcgacgt       780
     gtgacttctg ctgccaaact atgcaactat ggaccggatg aagaaatgga agccgtagtg       840
     agagtgatca cacaaagggc ctctgacgca agagtgcgtg tgcttgctaa tcgtaactgg       900
     atgaaacagg gcaccatgaa ggaccttatc gatcagatac gagatcggga gattgagaaa       960
     gccaacgaag aggaattcca aagagctcaa gtccgcagag aagcaccctt agtggctgcg      1020
     gtgtcccacg agaatcatga tgtttacagc cgacgaccag cattcgggtc ttacgaaaga      1080
     ggtagaggat ttccacgagc attccgggga gatggagttg gaggtagagg attttcaaga      1140
     ggaaactatc gtccccaact aagttccaat tgctggaggt gtggaagcat ttaccaccaa      1200
     gcttcggact gctttgcaat cagaaaggag tgtcgagtct gcagaaaatt tggacacatt      1260
     gcgcgggttt gtccaacaaa tcaaccgggt tcgtcgcgag agcagagaag acccctaaag      1320
     cgtcgtgctg atgaagagga gtcatcagga gaaaggaaag ttgccgctat cgagtgtgca      1380
     aaaattgagc cgaatgcgga tttgaaggta accgaaaacg atgaaagtct tgagtaaatg      1440
     ttttaaattt gaatttttgt ttcggtaact tgaaatgtta gtttatatat ttttatactg      1500
     aaattaaaat tgaactcaac atgaaaatta aatgacaata ataaatgaaa ttaattgttg      1560
     cgtgttattg ctgattacag aaaatggagc aacgtcttca tgtcaaagaa ccaaagccac      1620
     aagatgtgaa taaagttcaa acgctatctg agattgaaac aatttctgag aaagatgcaa      1680
     taattcaagc aaaggttgca ggagtacaag ttgatttctt gatagattcg ggtgctcaag      1740
     ttaacacaat aaccaaagca tcgttcgaga agattaaatc agatgcaaga gcatcatctc      1800
     aaatccttag cctacagtcc accacagaca ccagccactg aaggcttatg gcatgaaaga      1860
     tcgaatcaaa gtcattgcaa ttttttccgc tgaattgttc atctcgcctg atagaccagt      1920
     aactgttgag aagttttatg tcgtggatga attaagagcg cttttaggat tcaatactgc      1980
     gataaggtat tccgtcctcg acattggttt ggacgtacca atacatcaga atcagaggca      2040
     acctatccaa tttgatggct actgcgctca agctgtttca atcgcagaat ttccaaagtt      2100
     taacattcct ccggtatcac tgaaatacaa tacagacatg cccccggcgc gaaatgtgta      2160
     cacacacatt ccggcggcgt tcaaggaact aacgaaacag aagttggatt atttactatc      2220
     gaacggtata attgaagaag tcaccatggg catggatcgt tcgttctgtt cttcgctgtt      2280
     agtggtaccc aaaggcaagg acgatattcg aattgttatt gatctacgtg ggccaaacag      2340
     atgcatctat cgaacaccat tcaaaatgcc aacgttcgaa tccattttaa tggagcttca      2400
     tggtgctaag tggttttcca cggttgatct aacaaacgca tttttccaca ttgagctgga      2460
     agaaggatcg cgacatttga cgaacttttt tgctggggat ggactctatc gttatcgcag      2520
     actaccgttc gggttgacga acgccccgga tatttttcag gaggtcctac aaactgtgat      2580
     tcttacggga tgcaaaggac aggtgaacta tttggacgac ataatggttt ttggaaaaac      2640
     gaaagaggag catgatgaaa acttagctca ggtattgcag tgcctgcaaa accacaacgt      2700
     tgaattgaac aaagaaaaat gcgtctttgg aaaacaatcc gttgattttc ttgggttcgt      2760
     ggtgtctgat aaaggctgga aaatcgaaga cgacaaaatt gcagcgttga agaattttag      2820
     acatcccgaa tcgatatcag aggtcaaaag ttttttggga ttggtgaatt ttattgaaaa      2880
     attcattcca aatagagcag acaaaactat caaactccgc acattagcca aagctgacaa      2940
     attttactgg aatcaagatt tggatgatga attttcgttc ctgaaacatt ctgcatggaa      3000
     aactattacc actcttggct atttcaatag agaagaccgt actgaattat ttgtcgatgc      3060
     atccccttac ggtctgggcg cagtactggt ccaatttgac ggcgaaagaa gaccaagagt      3120
     gattgcatgc gcttcgaaag ctctatcggc tacagagatt aaatatcccc agactcaaaa      3180
     agaggcttta gcaatggttt gggcagtcga aaaattttcg atatatctca tgagtttatc      3240
     ttttacgata agaacggatg ccgaatccaa cgaatttatt ttcggaggcc tacacaggat      3300
     tggaaaaaga gcagttacaa gggcagaatc atgggcattg cgtctacagc catacaactt      3360
     cagtgttaag cgaattccag gtaaaatgaa cgttgcagac gccttgtcca gactggtaga      3420
     acaggctcaa ccactaaaat cattcgacga ggaagcgaat gaaaaccatc tactctactt      3480
     cattgatgct ggggctatgg aaatttcttg gagtgaaatt gaataccatt cagaaattga      3540
     cctagaattg aagaaggtga ggacagcgat aaaaacaggc tgctgggaag aaggacttcg      3600
     tagatatgaa tctcaatcaa aggaattgag cgttttcgga aattcagtat tcaaaaatga      3660
     taagattgtt cttccaaatg tcttaaggac taaagccatt gagtcggccc accagggcca      3720
     tatgggaatt ggttctacca aaagaatttt gcgtgaacat ttctggtggc caggcatgag      3780
     ttcagcagtg gaatctttca tcagacgctg tgatacgtgc cttcttcttt caaaaaagaa      3840
     tccacccatt ccactaacaa accgggagct ccctcgtggt ccttgggaga tattgcaaat      3900
     cgattttttc accgataaag agtttggatt tggcgagttt ctagttattg tagacacgta      3960
     ttctcgttac cttaacatca ttgagatgcg gcaaatggat gcagacgcta cgattaaggc      4020
     tttgaatgaa attttcgcgg aatggggctt tcctttagta atgcaaagcg acaacggccc      4080
     accattccaa agtgataaat ttgtgcggac ttgggagaat aaaggaataa aaattcgtaa      4140
     atccattccc ctgagcccac aatcaaacgg agccgttgaa aggcaaaatg aagggataaa      4200
     gagagcgttg gcagcgtcaa aattggatgg tacaaattgg aagttggcct tgaaaaaata      4260
     tgtacacgta cataataagg tgcgaccatt aacccgactc ggtgtaactc ctttcgagtt      4320
     actagtgggt tggaaattta gaggtacatt ccctggatta tggaaagcag aatcttcaga      4380
     tgaactagat cgagaggaca tcagagaaaa agacgcatac tctaaactgc tgagcaaaaa      4440
     aaatgcagat tttagcagac acgccaaaca ctctgatctt tcggtgggcg accaagtgat      4500
     tttgtcgcag atcaagcgga acaaatcaga tccaacattc aatcctgaga aatttaaaat      4560
     agtggcaaga gagggtgcta aaataattgt tcaaagcaac cgaggcgtcc aatactccag      4620
     gaatgtagca gatgcaaaaa gagttgaaga gcacgaggac tataatcaac aaaatcagga      4680
     tatcattgtc agttcacaat ctaaaatagg taagatgctc aaattccaat taaaatgagt      4740
     attaattata ttttttcatt catgaacagc cacgcagtgc tcgagcaatg ctaagattga      4800
     cgggtatggt acttttcccg atcttgtttc ccagaatcaa gaagcgcagt cagtcgttca      4860
     ccaaagtcaa tcatttggta agattatcaa atgacactgg tcaaaatact tatacttata      4920
     tgcacgttat tcattaggag gtggttcgtt tgagaccgac ggagcgagac ttcaattgga      4980
     taatgggaat tctattacgc aacgcccgca acgtgataaa aaaatgccaa atagattgaa      5040
     agatatgatt ttatatcata ttttcgacta ggttgaagaa catcacagtc aaagaattgg      5100
     taagatgaaa catataacat ctgatattct gaacttaatt caacatttaa tttgacttcg      5160
     cagacaaatc gtcaatggaa gcaacagatt atgcgattaa taccttggga cgctctaagt      5220
     gaattgtcga actcatcgat tgaaatggct ctgctcctct acgcataaaa aaaagtgttt      5280
     tgcattaatt gaaacttagc attaagagta cgagattaat caatgatact tattgtttct      5340
     aattacaaga gtttaaaaca tttattaaaa aaaaaaaaca agaaacctta cgaaaatgat      5400
     aataaataac aacttttata gacattaaaa ttttgagtaa atcatattat tatgtaataa      5460
     gacagctcta tttgtagagt aggggtgaga tgaat                                 5495
//
ID   Gypsy-445_AA-LTR repbase;    DNA;    INV; 1120 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 25.07, Created)
DT   28-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-445_;
KW   Gypsy-445_AA-I; Gypsy-445_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1120
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1120
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2078-2078 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1120 BP; 356 A; 264 C; 294 G; 206 T; 0 other;
     tgtagcagcg gacattgcag aacaaaaaaa tatatacata ttcataaatt gccaaatcca        60
     ttgtatccct ttcgagaaag aaaacacgta tacttcaatt cgcacgcaac cgaagccacc       120
     cctctcactg tctgtacggg taaaagtgga gggaaattgc gaaacgaacg caagacaaaa       180
     tgcaataaat acgaccctct aagccacacc aacgtcattc aattggtgga ctcgaaacgg       240
     aacagatcgt gacaacaaca acatcagcag cagcagcaag gcgagtggct agtagcagac       300
     agactgtagc gaggtttgaa gagttgactc gctgcagctg tctcctataa atagtggccc       360
     caatccgaag tcgggtcatt cagttggcgg actcggaaag gaacggatcg taacaacaac       420
     aacatcagca gcagcagcaa ggcgagtggc tagtagcaga cagactgtag cgaggtttaa       480
     agagttgact cgctgcagct gtctcctata aatagtggcc ccaatccgaa gtcgggtcat       540
     tcagttggcg gactcggaaa ggaacggatc gtaacaacaa caacatcagc agcagcagca       600
     aggcgagtgg ctagtagcag acagactgta gcgaggttta aagagttgac tcgctgcagc       660
     tgtctcctat aaatagtggc cccaatccga agtcgggtca ttcagttggc ggactcggaa       720
     aggaacggat cgtaacaaca acaacatcag cagcagcagc aaggcgagtg gctagtagca       780
     gacagactgt agcgaggttt gaagagttga ctcgctgcag ctgtctccta taaatagtgg       840
     ccccaatccg aagtcgggtc attcagttgg cggactcgga aaggaacgga tcgtaacaac       900
     aacaacatca gcagcagcag caaggcgagt ggctagtagc agacagactg tagcgaggtt       960
     taaagagttg actcgctgca gctgtctcct ataaatagtg gccccaatcc gaagtcgggt      1020
     cattcagttg gcggactcgg aaaggaacgg atcgtgacaa caacaacatc agcagcagca      1080
     acaaggcaca aaatggactc atcagacggc ggtcgcgaca                            1120
//
ID   Gypsy-446_AA-I repbase;    DNA;    INV; 6214 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-446_;
KW   Gypsy-446_AA-I; Gypsy-446_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6214 BP; 2296 A; 1296 C; 1100 G; 1522 T; 0 other;
     tggcgcagcc gtccggagcc ggctgagtgg acatttgcga aaacagtgga aaagtcgtga        60
     actaccaaac gcgattcaag tgatcccgcc gagattacgt gtgaaatcag taatcgacgc       120
     atcttagaca agcagacggt tccgtcgtcg aggagttgag gatccccccg tgaataccac       180
     ctggagcacc agcaacgtca gcccggccta cgtgacacga cagcaacaaa accgtgagta       240
     attttaattt tctttcctct caattgcgag tcagcgcgaa ttgtccgcat actacaagat       300
     aggtgcaaca aagagtgtgt gattgaatta aagggattga gattacttgc gtccctatag       360
     tttcagttct attccattgc gaatcaacgc atatcgatgc tgagcactac cagataggtg       420
     cagcgaagag cgggcagttg aattggaatt taaactttag gtagggaagc gaatcaacac       480
     catttcggtg agcttccgag aagcgaatca acacttttag tgtgcttcat tgataaaaat       540
     cgcactacca gatagatggg ttttatccct cttccgttat cataaaaact caagttgaat       600
     gactggcgtt ttaggccgtt ttaaatgcca aaagccaaca aatcaaacgc tctgaggcaa       660
     accaggagat tgctaaaatc ggtccaagtt aagtttaccg aaagcacctc tgaatctgag       720
     gcattaagcg aggatagtgc agagttctcc cacatcccaa tcgataacgt gtcaaacttg       780
     gagaatttat ttttaaccga gcaagaagaa tccaacatgg atcagctgct agttcaaatg       840
     aataccttga cccaagcgat cgaagctatg agaatccaac aacaccaaca actaacacgc       900
     tggttatcta cggccgaaaa cacattaaat aaattcaaga acatattcaa gatgaccatt       960
     ctgacgaaaa gcctcaaccg atggaagttg gatcggtcag aagcaaactt actctcaata      1020
     gaagacagat caataatagc gaaattactg acgatgagaa atcatcggaa tcagaacacg      1080
     aagacgaaaa tattgatctg aatttttgct ggggtcaatc aaaaataaca gaaacttaaa      1140
     ctatctacct tatgtagtga gtcaaaatag tgtaacaaaa caaattgtga aacttttaat      1200
     cgacactggc gctaacaaaa acgtaatccg gccaggtatt ttagtagatt gcaaaccgtg      1260
     ttcaaacaca acgataaaca atatttcggg aaagcacaaa attaacaaaa aaggtatagc      1320
     aaacttgatt ggctctggta tccctaacca atcgtattac gaacttaatt ttcatgattt      1380
     ctttgacggg atcattggct ctgaattttt ggctaaaaac aagggaaaaa tcgattacaa      1440
     tcaggaaaat ttggagatcg caggtatcaa aattccgtat aaaaagtatt tcccaacaaa      1500
     aaagctattt tcacatacta ttgagataaa cactaatgcg aatggagatt gtctggtacc      1560
     aacttttcaa aagttatcta aatccattgt tatcgaacct ggactctatg catcaaaaga      1620
     caagaaaacg acagtgaaaa taataaccac ctcgaaaaaa gctccatctt tgaacaaaaa      1680
     gctgaattta aaaattaata attttgagac tattaccccc attcccataa aacaacaaga      1740
     caaaatttcc gctgaaacct tggaaaactt acttcgaact agtcatttat caaaattaga      1800
     aaaagacttg cttttacaaa ccattttaga aaacgaggct gtcctattaa aaccaaacga      1860
     aaaattgaca gcaacttcgg cgattaaaca tacaatttta acaacggacg atcgcccggt      1920
     ctacacaaaa tcataccact acccccacgc attcaaaaat gatgtggaac agcaaatcaa      1980
     ggaattattg gataatggaa taatacgtca ctccaccagt ccatactcat cccctatctg      2040
     ggtggttccg aaaaagctcg acgcttcggg aaagcgtaaa attagggttg tcatcgatta      2100
     taggaaaatc aacgaaaaaa ctataaacga caaatttccg atacctcaaa tagaagaaat      2160
     tttggataat ctgggaaaat ccgtttattt cactaccctt gatcttaaat ctggattcca      2220
     tcagatcgaa atggatccgg atcaccaggc caagacagcg ttttcaaccg ctttaggtca      2280
     ttttcaattt accaggatgc catttgggct gaagaatgcg cccgctacct tccagcgcgc      2340
     gatgaacaac attcttggcg ggtatattgg aactatctgc tttgtatatc ttgacgatat      2400
     catcattatt ggcaaagatt taaaaacgca tattgaaaat ttgaataaag ttctcaagag      2460
     acttgcagat ttcaatttaa agatacagtt agacaagtgt gaattcatgc gccgagaggc      2520
     ggagttttta ggtcatgtaa ttacactaga aggcattaaa cctaatcccg aaaagataca      2580
     gaaaattctc gattggccat tgcctgaaaa tcaaaaacaa atcaaacaat tccttgggct      2640
     ttctggatat tacagaaggt ttataaaaga ctactccaaa attgtaaaac cattgacaca      2700
     gtacctcaaa aaagataaaa aagtaaattt aaaggacgaa aattacaaag ccgcgttctc      2760
     taaattgaag gaaattttgg catcagatca agtcctcact catccggatt ttgatctacc      2820
     gttcatattg actacagacg ccagcaatta tgcgatcggt gccgtacttt ctcaaattca      2880
     agacaaggtc gaaagaccca ttgccttcgc cagtcggaca ctaaccaaat gtgaaactaa      2940
     ctacagcaca attgaaaaag aagcattagc aatcatgtgg ggagttaaca aatttaaacc      3000
     atacctttac ggtaatacat ttacgttatt caccgatcat aaacctctcc agtacatcaa      3060
     aaattgtaat aaaaatcaga agcttctaaa ctggcgtact gaacttgaga attacgattt      3120
     cacaattata tacaaggaag gtaaaactaa cgttgttgcc gatgcgttaa gtaggaaaac      3180
     cgaaaacaat tgcgagatca atgtgaataa cactaattct cccgttttag atagcgattc      3240
     agaagcaaca gattccgatt caccaagcag agcagctgaa tcaccaaccg aaggaaacca      3300
     atcagataat gacgagccca cccacgatga tatcccgatc gaggaaaacg atccaggaaa      3360
     cgagtcagat ggtgacacga tccattcagc ggacacttca gacgacttct atatacattt      3420
     cgtggaaagg ccgataaacc attatagaaa tcagataatg tttcgtcttt ccagtagcct      3480
     acacaccgat atgactgagc aaccgtttcc aaattttcga cggacaataa tttgccgaaa      3540
     caactacgac gaaaacgaca ttaaagacct tttgttaaaa taccatgacg atcgacaaac      3600
     ggctataatg gcaccagaac aaataatcca aattatacaa gaggtttaca gaaaacattt      3660
     caatcaaaaa ggtcactttg ttctgacgca attgctagta gaagacgtgg caaatgaaca      3720
     acgacaagac ataatgataa ataaagaaca caacagagcc catcgcggag taaccgaggt      3780
     ggaaaatcag ttaagacgat gttatttctt tccaaaaatg gtatccaaga ttaaaatgat      3840
     gacacagacg tgcaaaatgt gcaataagca caagtacgaa cggaaaccat acaacattaa      3900
     actgttgcca agacctacca ccgacaaaca attcgacagg gttcatatgg acatattcca      3960
     gattaataga cataatttcc tatccctagt agactcattt tcgaagcatg cgcaaatgat      4020
     tttcatggaa actaaaaatt taacagacgt gaaaaacgca ctggcaggtt attttggcac      4080
     ttatggtaca cccagaaaaa tcgtcacaga tcacgaaacc accttcatgt ctttgcaact      4140
     aaaatctttt ctagatgctt taaatgtcga gattgaatac gcttcgtgtt ctgaatcaaa      4200
     tggacaagtt gaaaaaacgc attcaacgat catagaaata atcaacacaa acaagtacaa      4260
     attcccaaat atcgacacta aagctctagt tagtttggca atatcacttt ataatgatag      4320
     tatccattct gcaacaaaat tttcacccaa ggaaatcatt tttaataata gtaatttgat      4380
     tgacccaaac catattgaag aaaacgctca attgttatat aaaaaagtta aaaagaacat      4440
     agaaaaagct aggaccagtc aggaaaaacg aaacaagaac aaggaagatc caccccattt      4500
     agaccccaat caagaagtat ttcttatacc gaatattagg aaaaaacttg acccgagggc      4560
     aaaaccaacc aatgtgaacg aagtaaccga caagacgttt agaaacaaca aacgaatcaa      4620
     acgacacaag aataaaatta agcgattaag aaaacactaa cgttattttt ctcttctatt      4680
     cttcttatat tttcagatgc actcactact tttgatttca ttattcttaa tatttccatt      4740
     tacaaagtta caattcttag aaatcaaaaa tttatcaaac gatccagttc tactactaaa      4800
     acttaatgac tgcaagttac aaacaggagt aattaaaatt gttcatccaa tcaatttgac      4860
     caacttagaa aataatgttt acctttttac aaagctagct aggcagatag acagggacat      4920
     tcctatttca tctcttatct tacagaagag tagggaactt gtcaacaacc tgcaacaact      4980
     taagccgaca aaacccagga ggaccaaacg gtgggatcaa ctgggaactg cttggaaatg      5040
     gatggccggg tccccagacg ctgaagattt gagaatcatc aactctacga tgaacgaact      5100
     gatatctcaa aataatcaac aaaccaggat aaataacgtc ataaataaca ggattgacgg      5160
     aattatgaca acagttaata aactcatcga acaacaatca acggaaaaca agatcttgct      5220
     agaggagatg gacgcaatta ccctgctgct ctacatggac acgacgaata gcatcttgga      5280
     acaattggaa gacaccattc tgaggaccaa aatcgatctg ccaaacagta agctactatc      5340
     gcttaaggaa attctcacca tagaatcatt actcaacgaa caaggcataa aaacagaatt      5400
     tcctgaggaa gccttgaatt acgctaaacc aaagatagcg gccagaggtg acctattatt      5460
     atatatcttg caaattccaa aagtcaacgg aaattgtgag actatacaaa tcgtaccatt      5520
     aatagttcaa acatccataa taacggatct accctctttc gtcgttaaga gtggaaacga      5580
     tctgtaaaga actatgaaac cagatagcat aattcaacac gaagcctttc tcgaaccatt      5640
     gagacataac tgctcccttc acgtaattct gggaagagag agccagtgca atgcaacctt      5700
     tgacgacagc acaagaattg tgttaatatc taacaacaag attttgatca ataatgccaa      5760
     agaatctcaa atgaattcca actgtggacc tcacaatcgc acacttaatg aaaatttcat      5820
     tataaccttc ttcaactgta gcgtccaaat agacgagcaa atcttcacat cagaagaagt      5880
     agaaagcaac gtcacggaaa tccaaggagc tttcccgaac ctagcgataa agtggaatat      5940
     cgcgcaacat catgacattc cccacatcca tgaccaagcc attcttaaca ggaaacaact      6000
     agaggacatc aagctgaagc aattcgaaca caaaactctg ctgatagcga cgttcggagg      6060
     attatcgaca gccatggtaa tcataatcat cttaacagca acgtgtcttt tcagaaagcg      6120
     agtggttatc agaattggag aacaagagaa tacatcatcc cagaggaact agacaaaaga      6180
     agtccgagga cggccttcat actacccccg gagg                                  6214
//
ID   Gypsy-446_AA-LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-446_;
KW   Gypsy-446_AA-I; Gypsy-446_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-352
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-352
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2079-2079 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 352 BP; 102 A; 79 C; 74 G; 93 T; 4 other;
     agttatgcac cggatcgcca catttatgct gagtacaagg gtccaaagta cgaacagcaa        60
     ccacgccacc atcaacgtca tcgagcacgc caccgcggtg caccgttgtc gccaagccac       120
     cgtcagcatt tcccgaggag cccgactacg ccggccgaat aatgcagagt ggacaagttt       180
     aggtattaaa tagggttcga tcttcaatcg aacaagttag tctttgcttg cagtacttag       240
     aagtcagttt tatttcaatc aattagtgct agtatagtga gtgcatgtaa ttaagctaag       300
     atttgtgaat aaakttattt twttataaaa actckgtckt ctgacctaga at               352
//
ID   Gypsy-447_AA-I repbase;    DNA;    INV; 5518 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-447_;
KW   Gypsy-447_AA-I; Gypsy-447_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5518
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5518
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (29-JAN-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5518 BP; 1658 A; 1029 C; 1415 G; 1416 T; 0 other;
     tttggcgcag ccggtaggat gagttatggt agttgaagtt aaaatttaaa ttgcagttat        60
     tgaaagtgca gtgcaaattt ggaagctatg aagttggact acaagtggaa caaaacaaat       120
     atgtgcgata agatgaagct agatgaaata gccagaccag tttactctga agggcatggc       180
     aagaccggaa aaaaagtccg tagtgcaaat gaaggatgct agtccaaccg taggttgtag       240
     agcagaaatg atagaaaagc gagtccgggt aaccgaagcg ctgttagaaa aaaaagctgg       300
     gccagcttta agctgtagag caaaatgtag aggcgagtcc ggtttaaacc gcagcgcata       360
     gtaacaaaca caatcgtagc tagaccagct agatgctgaa gagctatggt agtgatgaca       420
     atattcacac tctctcctgt atgagtgtat gcagcggtga taaaaccgga gattgccacg       480
     gtggaaaacg agaagagcga tttgatacat gtgggggtat caacggtgaa agagagagag       540
     agacgaatgc ggatcaattt ctcaacctaa ccgttctggg tgttgttgtg tgtggggaga       600
     gaagctgaaa atgtgcaaac gcatggttgg aagaatggaa aatggaaaga tgtggcgtca       660
     ctggttgagt gtgttagggt cgaccgcttc atattttgaa gtatgtatgg gtgagaatga       720
     cagtttcgaa tattcgccat acatagacat gcgcaacttt gatagcaatt gtatatgttg       780
     acgtgttgtt cgcgaattcg ggcactacaa cgaatgtaac acaaagttgc atactatagt       840
     tgatatcgaa cagtgcgcga gaaaggttgc aaaaacttaa ttcttcgaaa gcaagcgaaa       900
     agtgtgagtt gtattgtgcc gtttgatagt gagccgaatt gaagctacgt ttttggtgga       960
     agtgaaagaa aagcaaagtc gaaatgcagg taatttattg atgaaactag tgaaatcagc      1020
     agcaaaatga agtgggaatt gcaaagaacc gtttatgcag tgtttattca gtggagtgac      1080
     gccgtggtgc tattttgttt taattacaga tgagcccacg agacaagtca aaatggccgc      1140
     tagaaccatt caatgattgt gtcgattcac aggatatgcg cagagagtgg gaagagtggc      1200
     atcgggcatt tgagctactt ttggaactgc gagatgtgga agaacaacac aataagttgg      1260
     tgctactgtt gactgtcggt ggccgtggac tgcaacggat ttattataat cttggcccag      1320
     ttcccgagga aatctatccg gaaccagtaa aagtgcctct ctgccctcaa gaagtgccag      1380
     agtacgacaa tgcagtcaaa agactgaata aattttttgt cggtaagcga aatgagcgca      1440
     tcgaactgga agtgtttcgt tctttgaagc agggaagcga cgaaaacttc aacaattttc      1500
     tgctgcgtct tcgttcgcaa gctgcgcgat gtgaattcaa ggacagagaa gcgaaggaga      1560
     ttctccagca agtcacgatg ggagctcgtg atgaacgtgt gcgcgataaa ggtttggaag      1620
     acgtgatgga tctggatgaa ataacaagct atgctgtcaa ccgagagatt ctcaacaagc      1680
     aaaaagagaa atcgaaagcg tttagtggtg agttagtatc tggatctgtt gcggcagtga      1740
     aacaagagtg gagaccacga atgaggagca atggaatggc caaatttgag ttcaacagag      1800
     ggaggcagaa cgaacgtact cgggcggaat gcggtcgatg tggtgcttac agacaccata      1860
     cggattcacc aaattgcccg gctcggaaag caaggtgtaa tcaatgcggt caaatcggac      1920
     attttgcgcg caaatgtcga gaatcgcgaa acggaccgag gaaacgcagc gcatggaagc      1980
     ggccgaaaaa cgaagctaac tcgttgcggg aggatgaaga ttggattgaa gagcttcctc      2040
     atcggccgaa aacggaagat ttgtccaagg tatagatgtt tgactgtgtt tgattttata      2100
     ccatttttgt ttcctttgaa tttgtagtcc aatatgtgaa gactaaactt gataaataaa      2160
     gtaatgagtt acctttattt gttttgtttt tctgtgattt tgtttagaat aatcggaacg      2220
     aaggtatgga cggcatcgtt acatgtctga ttgattcttg ttctgtggat tttcttgtcg      2280
     actccggttc ttccatcaat acagtgacga tagatgtttg gacaaaactt aacgaaagca      2340
     acgcaaatct gtccaagaag acatcatctg tcgaccgtcg attcacggcg tatgcaagcc      2400
     atgactctct caaagtgctg aaagtgtttg aagcttggat ctccgtcaat ccatcgaagc      2460
     caaccagcta cgccgaattt ttcgtgattg agggagcgaa caaatgcttg ctgggtaagc      2520
     gaacggcgga agacctaaag ctattgaaag ttggactgga tgtgcaaaac gttgagacca      2580
     aatggaacca ttttccaaaa tttccaaatg tacaggtagg atctttttgg attggatttt      2640
     aaaaagcata agtcacactt aattttgtgt ttaggtcaaa ttttcgatta atgaggatgt      2700
     ccccccaaga aagatttcct atcttcgtgt tccggagcca atggcaaaaa aggtcgaaga      2760
     gaagattgat gaaatgctgc gattggatat aattgagccg gttgaaggtg ttccagaatg      2820
     gatttcacct ttggttgttg tcccgaaggg atcgaatgat gtgcgactgt gcatcaatat      2880
     gcgatatccg aatgaagcca tccaacgcga acattttcct ttgccagtga ttgacacgtt      2940
     gctcaataga ttgaagggat ccaagtattt ctcgcgcttg gatatcactt cagcctatca      3000
     tcatgtcgag cttcatcccg attcccgcag cataacaact tttatgacca gtcgaggtct      3060
     tatgcgtttc aaaaggcttt tgttcgggat caactgtgcg cccgagatat ttcagcgcat      3120
     tatgactgaa atgcttaagg gcatagaagg gattatcatc tatatcaatg atgtgataat      3180
     atcgggacgg acgctgcaag agcataacgc ccgtttggaa gaagttcttg cagtcttgaa      3240
     acaaaataac gcaatgttga ataaaagcaa atgtgtctac ggagtatcgg aaatggatgt      3300
     ttttggtttc aaagttagtg aaaccggaat tagcccgtcg gcggagaaaa catcggcgat      3360
     taggaatttt cgcgtgccac aatccaaaga ggaggtcagg agttttctcg gacttgtcaa      3420
     tttcgtggga cattttgtac cacacttgtc gacaaggact gaaccattgc gacaatttgt      3480
     tcgcggagct gttgattcct ttggacagga acaactggca gcgttcaatg atctaaagga      3540
     tgaactttct cgaaatgtgc gaacgcttgg gttttatgat cctaacgaaa tcacggagct      3600
     gtatgttgat gcctcaccgg taggactggg tgcagttctt gtgcaaagag atgcacagaa      3660
     catacccaga gttatcagct ttgcatcgaa aggattatct acagccgaac gtatctatcc      3720
     ccagactcag cgagaggcct tagctgttgt ctgggcggta gagaggtttt atctctacct      3780
     gtttgggctt aaattcacca ttttttccga ccacaaggcg cttgagtata tcttcagtgg      3840
     gaaacataga gacggacgtc gagcgtgctc gagagcggaa tcctgggctc tacggttgca      3900
     gccgtataat ttcgaggtga gatacattcc tggaccatca aatatatccg acattctatc      3960
     tcggctatgc cctcatggag agccatcttt cgatgaagat tcggaacatt tcttgtttgc      4020
     gattagggag gactcgcaag cgatttcatt ggaagaaata agaaccgaaa cgacaagtga      4080
     cgagatactt tcggcagtaa ttgccgccct cgaaaacaac aattggcctg aaaaactctc      4140
     ccgataccaa gctttcgcga gcgaattggg tgttattgac ggagttgtag tacgcaacga      4200
     cagtattgtt cttccaaaga aactacgatc aagggccttg gacatagcac atcgaggcca      4260
     tccgggaatc gtagcgatga gacggaacct tagggagaga gtttggtggc catgcatgga      4320
     tcgcgatgta actgaaaggg tgcaagagtg cctaggctgc acagcggtaa gtaggcagtt      4380
     tcctccagaa ccaatgctca ggaaagagat gccagagagg gcttggcagg aaattgccat      4440
     tgattttttt acagcgaagg aatgtgcgac atttcttgtg gtagtagact actttagtcg      4500
     atatttgaag gttatcgaaa tgaagaccac aacagctgca aaaactatcg aagcccttga      4560
     aacgatcttc tttgaacaat cctacccgga gaaaattcgc tgcgataatg gacccccatt      4620
     ttcgagtgag gagttctcaa agttctgcca gagcaaaaat attaagttgg taaatacgat      4680
     tccctactgg cctcagatga atggtctcgt cgaaagacag aaccagggcc ttctgagagc      4740
     cttgcgtatt gcaaaagtaa tgaagaagga ctggcgtaag gctattgctg aatacgtata      4800
     tacgtacaat actactcccc actccgtcac agagacagcg ccgatggagc tcttgctggg      4860
     aagacccgtc aaggatttgt taccttctgg tagaactgag ccggagctgc gatatgatag      4920
     cattcgcgaa aatgacgcta tgagaaagat ggcaggtaaa atttatgcag acaaaaagcg      4980
     acatgctaaa cgttctgaca tctccgtcgg agatatggtt atgatcagaa attacgacat      5040
     gggtaagctg gagtctaatt ttcgattgga acggtttaaa gttattgaaa aaaatggaag      5100
     cgacacgacc gtcgtgaacg aagaaggggt taagtatcga cgcccaataa gccacctcaa      5160
     aagatggcca tcccgtaaaa caacgttgga agcagaatca gcgacatcgg atacagaacc      5220
     agctgatcaa tcagaaatga ccgaagaaaa gttgaaggaa gagacaactc atctccgatc      5280
     tcctggaacg aggaaacgta aatcttcgga gcaattcgct acagagcgaa aacgtccggc      5340
     taggtccaga agagtacctg cgcgcttcag cccgtagatg tggttttaat gttaacatgc      5400
     aaatgtcggt tgctctcttt atcatttgaa aataaatttg tctgaattac tggaaaaaaa      5460
     acagattttt ttttttaact tttttcattt ttttttttac tacggtgtga aggaagga        5518
//
ID   Gypsy-447_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-447_;
KW   Gypsy-447_AA-I; Gypsy-447_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-190
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2080-2080 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 190 BP; 59 A; 34 C; 51 G; 46 T; 0 other;
     tgtagagtca tgcatcaaag attgagtact aatccctgac tacatctctg gctagtcaat        60
     atgtataagt attagtgtga taaatagaca cgatctcggg cacggctgca agtaataagg       120
     gacggcattc gcgataggac attgaagtgg agaagaggta tcgagtgttg ggtcggacca       180
     caacgctaca                                                              190
//
ID   Gypsy-448_AA-I repbase;    DNA;    INV; 4176 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-448_;
KW   Gypsy-448_AA-I; Gypsy-448_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4176
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4176
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2052-2052 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4176 BP; 1190 A; 1198 C; 912 G; 876 T; 0 other;
     ttggtgaccc cgacggaaaa aaagttatag tttagcttcg aaaacgtttt ttcaaaccgc        60
     aagttgcgat tcgcgtcgat aaaaccgcgc aaaaaaccac cgcgaaagtg aacagttcgt       120
     ccccaacaaa accacgcgtg tgaacaatga ccgaagaaaa tctcttggcc ggcaatggcg       180
     gtggtgtgac caaaaatgaa gagtgcgata acggcgcggg cacgtcaatg gcgtcgcaaa       240
     cagtgatcgc gaaaattaat taccccgatt tcgacccgga cgatgtggac acgtggttca       300
     tttgcctaga agccgcgttt agtgtgaacc aaataaaaca ggacaggcaa aagttctacg       360
     cagtgattgt ggcacttgga cctcgtgcaa aattcgtcca caccgccatt gccaagtgta       420
     acgaagcagt gaacaatgac cgctacgaaa cgctcaaagc agccatcatg gaacatttcc       480
     gaccctcgga aatgcaacgt ttctcaagcc tactatccgg aatgacgctt ggtgaccgaa       540
     aaccgagtgt tctgctttcc gaaatgcgac gtctaggtgg agatggttgt acggacacgg       600
     tgctctccaa tctgtggcta cgtgcactgc ccagtaccgt ccgttcgatc atcgcttcga       660
     tgccgtccgc cccgctcgat gagcaggcga aagtcgccga taagatcatg gaggcacccc       720
     acaacgatat ttcggcgatc aagtcatccg agcaatcgac cattgcaagc ttggagcagc       780
     gcatcgaagc actttcccgc cgactagagc aagctttctc cggaaattct cggaaccgag       840
     gacgttcagc aagccgcaac agacagcgtt caccaggaca gcgcgaacca tcccgaccaa       900
     gagcacctcg ccgctggatt tgctggttcc actaccgcca tggagtgctg gcaaagaagt       960
     gcgagaagca aaaaggtgag aatgaacaca ttccttgcat tttttacgac aataagatgc      1020
     acgtgtacaa acgtcccgaa aaaaactaac ggccgagctc tcgcccgaac caataaatct      1080
     gcctaaaata accagcattg ccctgaacaa aacaataaat atccgaagaa ttcatgtcca      1140
     cgatcagcaa acctcccagc agtatctcat tgacaccggt gctgacattt ctgttgttcc      1200
     tccgtctcca cgcgaactcc tccacccagt gaaatccaac caacttttcg ctgcaaatgg      1260
     aagcgcaatc caaacatatg gcaccaaacg tctcactatc gatattggcc tccgccgtcc      1320
     ctttgtttgg gtcttcacca ttgccgatgt taagtcgcca atcatcggag cagacttctt      1380
     gaggcattac gatctgctgg tggatctcaa gcgaggtaaa ctgatcgaca atcaaaccag      1440
     cctggaaatc agcaacatca acgccgtctc cgaaccaaca atcaccacct tcgacgtgaa      1500
     ctcgcctttc gctgatatcc tcaaggaatt ccaggacatt accatcctga atatgaacca      1560
     ccgtcctacg aaggctaaca ctgtccacca aattatcacc acagggccac ccgttttctc      1620
     ccgtcctcgt cgactgccac tcgataagct gaatgaagcg aaagctgagt tcaggttttt      1680
     gatggagcaa ggtatttgcc aaccttccaa gagttcttgg gccagccctc tacacatggt      1740
     caagaagtcc aatgggaaat ggcgtccatg tggggattac aggaacctga atgccattac      1800
     ggttcccgac cggtacccaa taccgcacat ccaggatttt tccaacatcc tacacaacaa      1860
     aaaggtgttt tcttgcatcg atctgcagcg ggcctaccac cagatccccc ttgcagccga      1920
     ggacattccg aaaaccgcga ttactacgcc gttcgggttg ttcgaattca agtacatgac      1980
     ttttgggctc cggaacgccg gacaaacgct gcagaggcat ctccatgaca ttttgggcga      2040
     tctagatttt gttttcccat atgtcgatga cctttgcatc gcatccgata acatcgaaca      2100
     acacagggag catcttcggc tagtgtttga gcggctcaga gcaaacggct tgaccatcaa      2160
     cgctagcaag tgccagatag gtcaatccca tgtaacgttt ctagcacatc ttgtcactcc      2220
     agaaggaatt caacctacac cagaaaaggt cgaagccatt ctgaacttcc cacagccagt      2280
     cgttgcaaaa caattgaagc gatttctggg gacaatcaac ttttatcgcc gcttcattcc      2340
     gcatgcagcg gtgaatcaac aaatcctcca agccatgatc caaggaaatg tccgaaacga      2400
     caggacgcct ttgaagtggg atgagactac aatagccgcc tttcaacaat gcaagcaaga      2460
     cctggccaac gtagctcttc tcgctcaccc ctgttctgat gcaaaattag cactcgaagt      2520
     cgatgcatcg ggtactgcaa ttggcgcagt gctacaccaa atcaccgaac aaggtcgtca      2580
     accccttgcg tacttctctc gtaagttgag tgcatctaag caaaaagcaa gcacctacga      2640
     tcgggagttg tatgcgatgt acgaagccgt gaaatatttc aaggaccacc tcctcgctcg      2700
     tgagttctgc atatacacgg accacaagcc tctcactaca gcattccggc aacgacccga      2760
     acgagcgagc ccgactcaac aacggcacct gagcttcatc agcgagtaca cgacggatat      2820
     tcggcatgtt cctggcgagg aaaacaaggt tgccgacatg ctgagccgag ttgaagccat      2880
     caccaacaac aaagagccaa ttgacttcga agttatggcc aagcagcaaa ggactgatcc      2940
     cgagcttact gctttcctca ctactccacc caccaataca tctttggctc tgaaggcact      3000
     acaatcacca ctgtcgacga cgccgatgta ttgcgacata tccacaactg caatccgacc      3060
     gtttgtgccg aaaaatttca gaaccccgat catcgaaaag cttcacagcg tctctcaccc      3120
     aggtgtacgt gctaccactc gcctagtttc cgaccgttat gtgtggcctt caatgagacg      3180
     agactgcaaa acattcgtca ctcgttgcat cgcctgccag aagtcgaagg ttcatcgata      3240
     caacagagcc ccaatcgtcc aaatcacaac ccctgacgaa aggttcgctc acatccacat      3300
     ggacctcatc ggtccactac caccctccca cggaaacgcg tattgtctga cgatgatcga      3360
     caagttcacg cgttggcctg aggtgattcc aatccccaac atgacggcag ttacagttgc      3420
     gcaagccttc gtaagtagct ggattgcccg atttggagtt ccagtcaagc tgaccactga      3480
     tcttggaagg cagttcgagt ccgagctgtt tcgagaacta accaggattt tgggtatcac      3540
     ccacctgaaa acgacaccgt atcatcccca agccaacggg caaatcgaac ggacccaccg      3600
     acaactcaag gccgcgatca tgtgccacaa taatagcaag tggacagaat cgttgccatt      3660
     agtactcctc ggaatgagaa ccgccctcaa ggaagacctg caagcctccg tcgcagaagc      3720
     aacgtatgga acaaccttac gattaccggg agaatttttc accgaaacac caagcaagca      3780
     atcgtcaccg gacttcgtca tcgaactgaa gaaacaaatg gcccaacttc ggccaactcc      3840
     aacaagcaac cactcgaaga caaccacttt catccagaaa gaactgagca cctgcagcca      3900
     cgtttttgtg aagatcggag caatcaagcc acctctaaca caaccatacg ccggaccgtt      3960
     ccgaatactc cgtcgaaaga agaaagtttt catcgtcgac atcaatggga agaaatcacc      4020
     catatccgta gaccgtttga aagctgcctt catcgaagcc gacgaatcac catcaaccac      4080
     gaatgaagat caacccgaag caccaaccta tcgaacccgg tctggccggc atgtaaggat      4140
     tccccgccgg tattggaata attaaggggg gagtac                                4176
//
ID   Gypsy-448_AA-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 25.07, Created)
DT   29-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-448_;
KW   Gypsy-448_AA-I; Gypsy-448_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-292
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-292
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2081-2081 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 292 BP; 93 A; 94 C; 41 G; 64 T; 0 other;
     tgtggcgatc ccgcctggta acccggtata tccgaacatc atcaccatca tcatcaccgt        60
     tcaggtaact cattctcaat ccacacaccc gatctcggaa ccacacacag taactacaac       120
     cgatctccga atgtgtaact acaccatcct ctcacaccca acaccacaat agtgaaacca       180
     caaggtacct tctgtacata tctgtaaata ccatttagta ataaattgac taccgaagat       240
     cgaacacgcg attcttcccc gctccagcgt gaatccgaaa ggaccctaaa at               292
//
ID   Gypsy-449_AA-I repbase;    DNA;    INV; 5597 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.07, Created)
DT   30-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-449_;
KW   Gypsy-449_AA-I; Gypsy-449_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5597
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5597
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2053-2053 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5597 BP; 1772 A; 965 C; 1377 G; 1481 T; 2 other;
     aattggcgca gtcagtagga ttaaaaggtg agtccttttt tttgcgaaat attttgctgg        60
     atgaacggtc atggaaaaga aaatggcagc ttggatgaaa gttgtttcgt agtgatgatt       120
     tattgaaaca cagcgggttt ttatgtgtta tttgaaatga agaacatgcg ttgtgctagc       180
     cttggtacag tttctttaga ataaattgat tgattgattg ggagaaagcg ctaaatttca       240
     tcagattttc ttttgtgact gtgaaatggt gttatgagga aaagagttcg atggttgacg       300
     tgtgttctgc cattgaccat taaagtgaga cagaagagtg aaactatcat gaatgctagc       360
     ccagcaattg ctgtagagcg aaaggaaaaa aaattctcaa ttgctagccc agcaaccgaa       420
     tgctgtagag tgaaaaggaa acattgcgag cccatgcgaa gcgcaatagt tkgctagtcc       480
     agcgaagctg cagagcaaca agtgtgaaaa atgtgtgaag actgccagac cagccgttgc       540
     tgctgtaggg tagagcgaga agaaaacaag tgcgagtcca tcagaagcgc accagtgtca       600
     cagccagtcc aatgatgacg atcattgtag ggcatggaga gagagggaaa acaaaacgat       660
     tgatgctaga ccagcaagaa atgctgcaga gcaaaagtga tagcaaacaa attgcgagac       720
     ccattggaag cgcattgttg tctttgtggt gatccccttg atagaagaga aaaaaaaagt       780
     tttgttttat aactgcctgg ccagcaaact acgctgtcgg gcgagaaaaa gatcgaaagt       840
     ttatgtgaaa gagagaacgg caacagaaag attatttgat gatgatgatg atgatggggg       900
     gctgttcatt cagtccgtag aaataagaga gccagggctg tttcgatccg tctgagatcg       960
     tgagttaagc actgtaaaaa aatgtttaaa ggaaattcga acatgcaata atagatattg      1020
     attggtggat tatcaataca tatttcgttg taaagaaagt gaagtttgtg agcagcagca      1080
     aatctgtgac agcatagtaa tatctgtggt aagcgaaaaa tgaaccaaat tgaccacaaa      1140
     aaaaggtaag atagatattt taagaacaac ttttgaaaac ctgctgtgtg gaaataaaca      1200
     agagacaaag tgtattttgt gttgaaataa ctggttgcat gacaaaaaca attgtccctt      1260
     tatttgtatt ttttttttct tgtgaaaaat taaatgggtc agtaattgtt ggattatctg      1320
     attattattt cagacaatac aatggacaaa agcctgtggc cacttgagcc gttcaatgat      1380
     gcagttgatt cacaagcctt gcaaaaagag tgggaagaat ggcacagagc atttggcctt      1440
     ttattggaat tgagaaatgt ttcgtcccaa catgaaagat tcattttact tttggccctt      1500
     ggtggtcgcg gtctacaacg aatttactat aatcttggag tggttccgga agaaatccat      1560
     ccggcaccag tgaaggttcc gtatcatccg gtggagatcc cggaatacga taatgcgatt      1620
     aaacgcttga gtaaattttt cattggcaag cgaaacgatc gtgtggaact agagttgttc      1680
     agatcgctaa agcaaacata tgatgagtcg tttaaccagt tcattctgaa gctccgaata      1740
     caagctgcac gttgtgattt caaagagcgt gaagagaaag aaatcttaca gcaaataacc      1800
     atgggtgcgc gtgacgaaaa agtaagggac aaaggattag aaaacgttat gaacctgaac      1860
     gaactgacga attacgcgat taatcgtgag gttcttacga aacaaaagga gaagaaggca      1920
     tttcgagacg acgaagtcaa aggcgttgtt gcaacaataa agcaacaatg gtctggggaa      1980
     tcaagcgctc gtggaatgaa tcgtcgatcg tttgaacctg aacgcagagg atcgggtaga      2040
     gaatcgtcgt ctaacttcat cagaaactat cgctcgaagt gtaatcgatg tggatcattg      2100
     aaccatgata ctgaagcgcc taactgctca gccagaaatg ctcgctgtaa ccgatgtgcg      2160
     aagattggtc attatgccag ggtgtgtaat ctatcacgca cttcatctgc gaggagccgg      2220
     tatgtttgga aacgtcagta tggaccgtca gttaaggaaa ctaattcttt gcgcgaaaac      2280
     gaatggaaag aggatcttcc tcatcgtcct gaactgaatg atatctcaaa ggtaaattga      2340
     ttataatttc gaaagtggta atattgtttt aagataaatc aactgactgt taaattgcgg      2400
     taggctttgt tttgtatgat tggactttga ataaagaatt gattttgaat tttcgttttt      2460
     ttttactagg aaacagtaca gttatctaat aacggaacga tatgctgttt cattgataag      2520
     ttccctgttg aattccttat cgattctgga gcagctatta atgcagtaac tgaaaatgtt      2580
     tgggacatgc taaaaacgac aaaagcagcg attttcaaac aaaaattcca gtgcgatcgc      2640
     cagtttaagg catatgcctg tgaaacaccg cttcgcgttt cgacaatatt cgaagcatgg      2700
     atatcaatca atgcttcgaa accgaaatgt tatgcggawt tttttgtaat tgacggagcc      2760
     aaccgatgtt tactaagtaa aagaacggca gaggaactga aagttcttaa agttgggctt      2820
     gatgttcaac atattgaaca agagtcagag tcgtttccaa agttcccaaa cattcagttg      2880
     aaactgtcta tcgataagag ggttccccca agaaagatcg cctatctcag aatcccggga      2940
     ccaatggaag aaaaggttga cgctaagatt ttggagatgc tgcggaatga tatcattgag      3000
     ccagtaaatg gtcctgccga gtggatttca ccaatggtgg tagtaacaaa gggagttgat      3060
     gacgtccgcc tgtgtatcaa catgaagtac cctaatgagg caatccaaag ggagcactac      3120
     ccattaccgg taatcgaaac atttttgaac aaactcagag gatcaacagt tttttcaagg      3180
     ttggatataa tgtccgcatt tcaccatgtg gaactacacc cggaatcacg aggaatcacc      3240
     acgttcatga cgagcagagg gttgatgcag tttaagaggc tgatgtttgg tattaactgc      3300
     gcgccggaaa ttttccagcg aattatgacg gaaatgttgt cagggattga aggtgtcata      3360
     gtatatatcg acgatattgt cattaccggt agaaatcagg cagaacatga tgctaggttg      3420
     caggaagttt tgtcagtact caagaaaaac aatgcgaaat tgaatgaaag caaatgtgtc      3480
     ataggcgtca aggaaataga gattttgggt ttcaaggtta gctcagcagg tattagccct      3540
     tcagatgaca aggttacagc gatcaagaat ttccgtcaac ctgaaacaag agaggaagta      3600
     agaagtttct tggggctcgt gaatttcgtc gctcacttca tcccaaattt atctacacga      3660
     tccgagccgt tgcgtcaatt tgtgcgcggc aacgtcaatg atttcggtgc acttcaacaa      3720
     aacgctttcg atgacttgag aactgaatta tcttcaaatg tgcgtagact aggattctac      3780
     gaccccaaag acgttactga gctcttcgtc gatgcctcat cggttggcct tggatcagta      3840
     ctagtccaga gagataaatc gaatgttcca agaatcatat cgtttgcttc aaagggactt      3900
     accgctacgg agagaattta ccctcaaacg caacgagaag ctctggcagt tgtgtgggca      3960
     gtagagaaat tctacctcta cttgttcgga cttcgattca ctatttttac tgatcacaag      4020
     acgttggaat acattttcgg agggaagtac agagatggaa ggcgagcatg ttcgagggca      4080
     gaaggctggg cattgcggtt gcagccgtat aactttgaag tcaaacacat ccctggatac      4140
     aataatatat cggacgtact atctaggcta tgtagtcaat cagatgcagc ttttgacgag      4200
     gattcggagc attttttgtt agcaatcgga gatggaccag ttgcaatcac gttagatgag      4260
     atcaggcgtg atacaaaaag tgatgagatt cttcagtcgg taattaagtc ccttgaatca      4320
     ggagattgga ctcacgattt agttcgatat caagcgtttg agaaggagtt aggtgttcga      4380
     gatggtattg ttgttcgtga tgagagaatt gtacttccag ttaaattgag acgaagagca      4440
     cttgaaattg aacatagggg acatcctgga gtagtttcaa tgcgtaggcg cttaagagag      4500
     agagtctggt ggccgtgtat ggacaacgat gtcggtaaca tgatccagga gtgcgccggt      4560
     tgtgcagctg taagtagaaa tcatccacca gaaccgatgc tgcgaaagga tatcccagag      4620
     agagcatggc aagaagttgc tattgatttt ttctcggcaa aggaatgtgc gacgttcttg      4680
     gtgctagtgg attatttcag ccggtatctc aaagttgtag aaatgagagg tacaaccgct      4740
     gagaagacta ttgaagcttt ggaagcaatc ttcaatgagc agacatatcc tgaaacaatc      4800
     agaagtgaca atggtcctcc gtttgcagga gaggtgtttg ctaattattg ccgtagcaaa      4860
     aacatccggt tagttagaac gatcccttac tggccacaaa tgaatggttt agttgaaaga      4920
     cagaaccaag ggattctaag agcccttaga atcgcaaatg ctacaaacag tgactggcgt      4980
     aaggcggtga aggattacgt ttatatgtac aacaccagcc ctcattcgat tactgataaa      5040
     gcccctatgg aactgatgac tgggcgacca gtgaaggatt tactgccaag tttcagaact      5100
     gatgcaagct ggaatcgaga cgaagacgta cgagagaaag acgcagtcaa aaagttgcag      5160
     gggaagattt atgcggacga aagaaggcat gcaaagattt ctgaaatcaa tgtcggtgat      5220
     tttgtaatgc tgaaaaacta tgagactggc aaattggaac ccaaatttcg catggaaaag      5280
     tttatcgtct tgaagaaaac aggaaatgat acgattgtcg tgaatgagga tggtgtgatg      5340
     tatcgccgtt ccgtaactca tttgaggaag tggccattga cacccaacga agtaacggtt      5400
     ccatccccaa cagaatcaca ttcactggat gataaggaga gttcagaaaa tactgcaaaa      5460
     cgtttggtag atgacaacaa gggagatgaa gcacctaaac gtcccacccg ggcaaagaaa      5520
     cttcctgaaa gattccgata atttgcgttg ttcagtgaat tgaatttatt tgattttttt      5580
     tcggacaagg tgaggaa                                                     5597
//
ID   Gypsy-449_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.07, Created)
DT   30-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-449_;
KW   Gypsy-449_AA-I; Gypsy-449_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2082-2082 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 216 BP; 68 A; 30 C; 61 G; 57 T; 0 other;
     tgtagagatc cttagtacac ccctggtgac gagagggaat gaagcgagag tagatgggag        60
     agagagttga tagggcagaa gtattgaagc catgactgtg aaaagatgtg caataaagtg       120
     atgtgaaaac tgaagtgtgt taaagtgagt ttttaataaa cgaatccgta agttgcttat       180
     tccgctggcc gattgattcc ttgttacgat cctaca                                 216
//
ID   Gypsy-44_AA-I repbase;    DNA;    INV; 5799 BP.
XX
AC   supercont1.385;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_AA_;
KW   Gypsy-44_AA-LTR; Gypsy-44_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5799
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.385; Positions  222280  216482.
XX
CC   Positions [4621-5127] - Integrase core
CC   'ATAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           816..1958
FT                 /product="Gypsy-44_AA-I_2p"
FT                 /translation="MDITYLEQQIAYLRVNLNNLKKCPNREYLSATLTKKK
FT                 QFCQETYDRAIVLLEDLNQKISKEDSEYYKNIIVRIYSDICNLIEEKLKKL
FT                 EMPPKLDLGLALKIVKPFDGSASNLQQYVESVNLLKDYATDVSEADILKFI
FT                 KITLTGAAHGSIDSAQSINDAFTELKNKFAVKLTPRAVENEMLSKRQHNAS
FT                 ITDYGAEIEKLATKLAAAHVSQGTFTSEAAASNIVESVAVRAFVDGLQNPT
FT                 TQFLLRARNPTSLNKAVSDALECNPGTSKPKNEMALWCNSQYYPRRGSNNN
FT                 WRGRASGYRRGRGFSRGRGNFHRGNFQQYNNNGNRGNNHNNNNNHNNETNN
FT                 NRNRHSNAHANVAEQNNNRRQPNEEEAEVNVVAELFRE"
FT   CDS           2644..5568
FT                 /product="Gypsy-44_AA-I_1p"
FT                 /translation="MTKLQTKEKQTISKICLKYADIFCLKDDKLTTTEIFT
FT                 PTISLKKDAKPIYSKQYRLLQSQKQEIDKQIGKMLSDGIIEKTRSEWNSPI
FT                 LLVPKKSADDSKKWRLVVDYRKLNNVLEDDKFPLPNIEEVIDSLAGAKYFT
FT                 HLDLSQGYYQCQLKAEERPVTAFSTSTGQYQMTRLPMGLKTSPSTFSRLMT
FT                 IAMSGLNGAQCLVYLDDLIIFGRTFYEHNRNLIKIFERLREVNLKLNPAKC
FT                 NFLQEELVYLGHYISADGIKPDPAKVEAIKNWPRPINADEVKRFVAFANYY
FT                 RKHINNFAFLCAPLNFLTRKNIQFVWTNECETSFKELKERFMNPPVLDFPN
FT                 LSNDNTFTLHTDASGYAIGAVLSNGNGRPVAYASKMLNQAEKNYPTIEKEL
FT                 LAMVWGIRHFRPYLWGKKFLVYTDHRPLVYLFSLTDPSSRLTKFRLALEEY
FT                 NFEVIYKRGTENVIADALSRISIQELKSLSEKTCLITTRSMERNKKENSSV
FT                 KTSEDRTDHPSSPALDSIELEIDKKSKDIKFSKTKIVIPLKTTSIHLRGMM
FT                 NKIIEFTKKENIKALIIKDNVATTREVIKNINAQELDGMPKIYIIGKHIKE
FT                 VQDEKEKLLIMNDFHILPTAGHAGIKRTLNTIKLRYYWESMSKDIEEFIKH
FT                 CKQCQINKLSNTKIPMKITTTAESAFEKVYLDIVGPLIKSDGFEYILTTQC
FT                 ELSKFITATPIPDKTTLTVANAFVTSVILKYGVPKTIVSDRGTEFMSELFT
FT                 SVANILGIEKLNSTAYHHQTIGALENSHKVLGTYLRIQCDGKLFSWSEWLP
FT                 FYEFSYNNTVHSSTGHTPFYLVYGKLSNVPSNLTEKSEEQNYNLDEYTTIL
FT                 KIKLRHAHEAARKQLLNTKIQRKTNYDENKKLVNFKAGELVLIKNETSKKL
FT                 QAKYKGPFKVIDDLGENIQVKINKKLDTVHKDRIKRYLGHVVDKKNKNDKN
FT                 GKEEILEAENKSEEEEHVKN"
XX
SQ   Sequence 5799 BP; 2203 A; 1019 C; 1053 G; 1524 T; 0 other;
     tggcgatcct gccaggagca gtgaaattga tattgcatgg agactaagtg ccaggagcag        60
     cgaaagtaaa agtgtaaaag ttcagtgcca acattttccc cccgtgtaaa gcattatttc       120
     tgcaccatgg gctggttctc gtcagatgag aacgtggcca taagcaacac ggacaatact       180
     ccgttaacta tttcaatttg tgtgatggct atagccatta ttggatacat gttggtgaaa       240
     ggactagtgc tgcttcataa gcgaagcacc gaacgattgg cggaacgaat cgcgcggcgt       300
     accgtcgccg gagtgtaaat tattttcaat ttgcaacatt gaacaatcaa aacggaaaat       360
     ttagcaacag taacgaagaa aattttatgc ccacaactaa gtgacaaagt gacaaaatgt       420
     gcgaacgaaa agtacaagaa aaactatact cgctgtgctt tatccagtta gtggaaatac       480
     ggtcaacact ggaaaggaaa gtgcaggaag ggttctcgaa ggaagaaatt cgagctcaac       540
     tcgaaatcgt aaacgctctt tttgggctgg ccgccggagc agctgtaaga ctggaaatgg       600
     aaccaaggga cagtgacatc atcgtacgat tggtcgacgg catcgcagat atgctgaact       660
     ggaatgcatc atcccagcat tagcagacaa caaggcgtta attcctttgc cttattagtg       720
     aggtacatgc gctatcctgc taacatgccg taaggaaata ataataataa aaaaaaaaaa       780
     cccaatgtga gtaacaaaaa ataatatctt tattaatgga tataacctat ctagagcaac       840
     aaatagctta ccttagagtt aacctaaata atttaaagaa atgccccaat agagagtatt       900
     taagtgcaac gttaaccaag aagaaacaat tttgtcaaga aacgtacgat agggctattg       960
     tgttattaga agacctgaat caaaagatat ccaaggaaga ttcagaatat tacaaaaata      1020
     ttattgtaag gatttattcc gacatttgta atttgattga ggaaaaatta aagaagttag      1080
     aaatgcctcc gaaactagat ttgggtcttg cgctaaaaat tgtcaagcca tttgatggct      1140
     cggcgagcaa tttacagcaa tacgtggaaa gcgttaatct cctaaaagat tacgcaaccg      1200
     atgtttccga agcagatatc ttaaaattta taaaaataac tttgacagga gctgcgcatg      1260
     gctccatcga ctcagcacag tcgataaatg atgcttttac tgaactcaag aataagtttg      1320
     ctgtaaagct aactccccga gcagtagaaa atgagatgtt atcaaagcgt caacataatg      1380
     cttctatcac tgattacgga gcagaaatcg aaaagttagc aactaagctt gctgctgctc      1440
     atgtatcgca aggtacattt acttcggaag ctgctgcttc aaatattgta gagtccgtag      1500
     cagtacgagc tttcgtggat ggtcttcaaa atccaaccac acaatttcta ttgagagctc      1560
     gaaaccctac aagcctaaac aaagccgtat ctgacgcctt agagtgcaat ccaggtacgt      1620
     ctaaaccaaa aaatgaaatg gcactatggt gcaattctca atattatccc aggagaggga      1680
     gtaacaataa ctggagaggc cgtgcgtcag gatatagacg tggccgcggt ttctccagag      1740
     gacgcggaaa tttccaccga ggaaatttcc aacagtataa caataatgga aacagaggca      1800
     acaaccataa taataacaac aaccataaca acgaaaccaa taacaatcgc aacagacata      1860
     gcaatgctca cgcgaatgta gctgaacaaa acaataatag gagacaaccg aatgaagagg      1920
     aagcagaagt taatgtagtt gccgagcttt ttcgtgagta attcgaacaa tggactacta      1980
     cgaataccat ttaatctatt gaataactct ataaatttta ttatcgatag tggagcaagt      2040
     tgttcgataa tatcaaaaca acttgtacca gataacatac acatttatag aactaatata      2100
     ttggaagtta aaggcataaa tggaacgtcc cgttccattg gaacgattaa tgttaatata      2160
     aaatacagac aattcaaatt tccaattaca ttacatgtta tcgaagaatt gccaaaaaac      2220
     attccagcgt taattggaac agatttctta cgacgaacta acgcggtcat caattttaac      2280
     tctttaactt tagaattgaa taacaatgcc gaaacaatag tgattccctt tatatcgaac      2340
     aatcgcgcgt ttgtaacagt acctgcgcgt tcagagatag ttacacatgt aataagtaaa      2400
     tataaggatg actgtgtggt tttgaaccaa cagatcacat cttcagtttt tgtagctaac      2460
     tcattggcca caccaaacca aggtaaaata ccagtgagat tagtaaatat aggagacaac      2520
     ccaatatgta tcgaatcgtt aaaagttgat atcaaaccat tgaaaaatta taaccagatc      2580
     ggaaaaatca gttttcccaa gtatgacaca aaaagagcaa ctcaattgct caaagaactt      2640
     aacatgacaa agttgcaaac taaagaaaag caaacgataa gtaaaatttg tttgaaatat      2700
     gctgacatct tttgtttaaa agatgataag cttacaacaa cagagatatt tacgccaaca      2760
     attagtttga aaaaggatgc gaagccaata tattcaaaac aatacaggct actacaatcc      2820
     caaaaacagg aaattgacaa acagattgga aaaatgttat cagacggaat tattgaaaaa      2880
     acccgttctg aatggaatag tccgatttta ctcgtgccta aaaaatcggc tgatgattct      2940
     aaaaaatgga gactagtcgt tgattaccga aaactgaata acgtactaga ggatgacaag      3000
     tttccacttc caaacattga agaagtgatt gactctttag ccggagcaaa atatttcaca      3060
     catctagatt tatcgcaggg atattatcaa tgtcaattaa aagctgaaga aagacctgtg      3120
     acagctttct cgacgtcaac tggacaatac cagatgacta gattaccgat gggattaaaa      3180
     acaagcccat caaccttttc aagactaatg acaatagcaa tgtcgggtct caacggagca      3240
     caatgtttgg tatacctaga tgaccttatc atttttggta ggacatttta tgaacataat      3300
     agaaatttga taaaaatctt tgaaagatta cgggaagtta acttaaagct aaacccagcc      3360
     aagtgtaact ttctacagga agaattggta tatttgggtc attacatttc agcagatggt      3420
     atcaaaccgg atcctgctaa agttgaagca ataaaaaatt ggccaagacc tatcaatgca      3480
     gacgaggtaa aaagattcgt tgcatttgca aattactata gaaagcacat taacaatttt      3540
     gctttcttgt gtgcaccttt aaattttctt accaggaaaa atattcaatt tgtctggact      3600
     aatgagtgcg agacatcatt caaggaactt aaagaaagat ttatgaaccc acctgtttta      3660
     gattttccaa atttgtctaa cgataacaca ttcactctgc acacagatgc atctggatat      3720
     gctataggag ctgttctttc caatggaaat ggcagaccag tggcatacgc cagtaaaatg      3780
     cttaaccaag cagagaaaaa ctatccaact atcgagaaag aactattggc aatggtatgg      3840
     ggtatacgtc attttcggcc ttacctttgg ggtaaaaagt ttttggtgta tactgaccat      3900
     aggcctttag tttatttatt ctctcttact gacccttcga gccgactaac aaaatttagg      3960
     ttggctttag aagagtataa ttttgaagtg atttataaac gaggaacgga aaatgtgata      4020
     gcggacgcgt tgtcgcgaat ttcgatccaa gaacttaaat cactcagtga aaaaacttgc      4080
     ttaataacga cacgttccat ggaacgaaat aaaaaggaaa attcatctgt aaagactagt      4140
     gaagatagga ctgatcaccc ttcatcacct gccttagaca gtatagaact agaaattgac      4200
     aagaaatcga aggacataaa gttttccaaa acaaaaatag taattccatt gaaaacaaca      4260
     tcaattcacc tacggggaat gatgaacaaa atcattgaat ttactaaaaa agaaaacata      4320
     aaagcattga ttataaaaga caacgttgca acgacaagag aagtaattaa gaatatcaat      4380
     gcacaagaat tggatggcat gccaaaaata tatattattg gaaaacacat caaagaagtc      4440
     caggacgaaa aagagaaatt acttataatg aatgatttcc acatattgcc aactgcaggg      4500
     catgctggaa tcaaaagaac actgaatacc atcaaattaa gatattattg ggaaagtatg      4560
     agtaaagata ttgaggaatt cataaagcat tgcaagcaat gtcaaataaa taaacttagc      4620
     aatacaaaaa ttcctatgaa aattacaaca acagcagaat cggcgtttga aaaagtatat      4680
     ctggacattg ttggtccatt aataaaatca gatggatttg agtacatctt aacaacacaa      4740
     tgcgaactat caaaatttat aacagcgaca ccaatccctg ataagaccac actgaccgtt      4800
     gcaaatgcct ttgtaaccag tgttatttta aagtatggag tgccaaaaac aattgtctct      4860
     gacagaggaa cggagttcat gtcagaactg tttacatccg tagcaaatat tttgggaata      4920
     gaaaaactaa attcaaccgc ctaccaccac caaaccatag gagccttgga aaactcacat      4980
     aaagtactgg gaacatattt gagaattcaa tgcgatggta aactattcag ttggtctgaa      5040
     tggttgccat tctatgaatt ctcctataat aatacagtgc attcatcaac tggacataca      5100
     cctttttatt tagtctatgg gaaactttct aatgtaccgt ccaatttaac agaaaaatca      5160
     gaagaacaaa attataattt agacgaatac accacaattc ttaaaattaa acttagacac      5220
     gctcacgaag ccgctaggaa acaattgtta aacacaaaaa tacaaagaaa aactaattat      5280
     gacgaaaaca agaaacttgt aaattttaaa gcaggagaac ttgtcctcat caagaacgag      5340
     acatccaaaa aacttcaagc gaaatataaa ggtccattca aagtcataga tgatttagga      5400
     gaaaatatcc aagtaaaaat aaataaaaag ttggacactg ttcataaaga tagaataaaa      5460
     cgatacttag gacatgtggt ggataagaaa aataaaaacg ataaaaatgg taaagaagaa      5520
     atattggaag cagaaaacaa aagtgaggaa gaagaacacg tgaaaaatta ataattcatg      5580
     atctaaacat actacttact tttataaata aattgtacat attgacataa ccagcataat      5640
     ttgtaagaat acttcaaaca tttatttgca tacactatac attttatatt gtactactgt      5700
     tctattacat acatattact tttatattac ttctactatc ttatcttata aaaaattgta      5760
     agttttgaac ttaaattttt tatgtaatta attagggcg                             5799
//
ID   Gypsy-44_AA-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   supercont1.385;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_AA_;
KW   Gypsy-44_AA-I; Gypsy-44_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.385; Positions  216481  216193.
XX
SQ   Sequence 289 BP; 90 A; 67 C; 58 G; 74 T; 0 other;
     tgtggtggat acatggctta agtggttgcg ataaacgcaa cccaataaag taaacatgga        60
     tcagcataaa cgcgatcacg ccatccgggg cgatgagcgc atttatgctg agtaaagcaa       120
     aaacagtcac gtagccaccg cccgagtagg tttcctctag cataagtttc tttgaataaa       180
     tgaattcttg ttcggacctc attcggatca ctcgagtcat ttagtatcac gccccgacat       240
     atatcgtcaa tggacttcat catcatcaac caaataagtt aacaattca                   289
//
ID   Gypsy-44_AnFu-I repbase;    DNA;    INV; 4209 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2928-2928 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..4161
FT                 /product="Gypsy-44_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPNPDKTNGGQKTAAVTTAAAATIGRATAAAVLPPNF
FT                 VIDPFDKKKSKWMRWVERLETAFLLYEVVNEETRKNFLLHYMGPESYDIIC
FT                 DKVAPESPREKTYNEIVSTLDAFYSPKPHEIAENYRFNCRRQGDKDAASAE
FT                 ETVEEYLVALRKIAATCNFGAYLDTALRNQLVFGIKRGDIRDRLLEKRELT
FT                 LNGALGMAVSMELSRKGREEIEGGSSKQDLHAVQQQRKVKKIQSTKQNYST
FT                 NSASCFRCGDKSHLANVCKHKTTICSFCKLQGHLAKVCLKKSAATKNEMRP
FT                 AKKPNAVHTNYVDQSSGRQEIQDVCSVGALSRCQKFTLNVVVNGKMIQFEI
FT                 DTGSPVSIISAAHKNKLFPQTKLRGCDTELVSYCNTSIKVLGILDATVKMK
FT                 DHTKKLPLYVVNSEKHPLLGREWLKEFSLDWNSVISSTNTINMVSTTAASS
FT                 CRTAALKTILERYPKVFDASIGRISNVQANLRLKENARPVFIKARKMPFNM
FT                 IKTVEDELDKLVGEGVLTKVDSSNWATPIVPVKKSQNRVRICGDYKQTVNP
FT                 NLVVDKHPLPTVDELFSSLAGGKKFSKIDLVQAYLQLEVAPEDREILTLST
FT                 HRGLYRPNRLMYGVASAPAIWQRQMESILQGIQGVSVFLDDIKITGENDEI
FT                 HLSRLEEVLRRLDDRGIRVNKDKCQFFEEAIEYCGYLINQKGIHKIRKKVD
FT                 AIQDMPRPKNRDEVRSFVGLINYYGRFFQNLSTVLYPLNNLLKTDVPFRWT
FT                 RQCEDSFKMVKSQMQSDNCLVHYSPELPLLLATDASPYGVGAVLSHVYPDG
FT                 TERPIQFASQTLNRIQQKYMQVDKEAYAIVFGVRKFFQFIYGRKFTLLTDN
FT                 QAITKIFGEHKGLPVMSALRMQHYATFLQSFDYTIKFRKSTDHANADAMSR
FT                 IPLNVTDPDNVIEESDSIELNQIETLPLTAAELGQATAEDQSVRKLLQGIK
FT                 HGQEIDATDRFGVEQHEFSLQKGCLLRGIRVYVPASLRKRVLQELHSVHFG
FT                 VTRTKSLARGYCWWPGIDREIETMIANCADCQSVRAEPAKMNLHCWETPSA
FT                 PFQRVHVDFAGPFMDTYFFIYVDAYSKWPEVQICKSTTAENTVNMCREIFS
FT                 KFGIPSVLVSDHGVQFTSAVFEHFLKMNGVVHKMGAPYHPATNGQAERYVQ
FT                 TIKQKLKALKCPKLQVNLELCNILLMYRKMIHPSTGKSPSMLVFGRQIRSR
FT                 IDLLLPRNETSNKADIAVRQFKDGDRVRVRDFLSQNKWKFGVIAEKVGKLR
FT                 YAVRLDDGRIWERHIDHIAGVGAELQGSSKDTPSENKFNMHDESTMPTVVT
FT                 PVSTTSPSKETADTTPVAPTQNATQTTTTMPVADPGSSPRVEPDLPDSAEG
FT                 VPNLRRSSRVSKPPLRMNL"
XX
SQ   Sequence 4209 BP; 1267 A; 879 C; 1022 G; 1041 T; 0 other;
     gttttggcga cgagtatgcc gaatcctgat aaaacgaacg gcgggcagaa aactgctgct        60
     gttactactg ctgctgctgc tactatcggc cgtgctactg ctgctgcggt tctaccacca       120
     aacttcgtta tcgacccctt cgataagaag aagtcaaaat ggatgcggtg ggtagaacgt       180
     ttggagactg ctttcctgct ttacgaagtt gtaaacgaag aaacaaggaa aaactttctt       240
     ctgcactata tgggtccgga atcttacgac attatttgcg ataaagtcgc accggaatct       300
     cccagagaga aaacgtacaa cgagattgtc tctacgttag atgcctttta cagcccgaaa       360
     ccacacgaaa ttgctgaaaa ctaccgtttc aattgtcgcc gacaggggga caaagatgct       420
     gcttctgctg aggaaacagt agaagaatac ttggtggctc ttcggaaaat tgcagcaaca       480
     tgcaattttg gtgcgtattt ggatactgcg ttacggaacc agctggtctt tggcattaaa       540
     cggggtgata tccgcgatcg gctgctcgag aaacgggagc tcacactaaa tggagcactg       600
     ggtatggctg tcagtatgga attgtctcgc aaaggaagag aggagattga gggaggctca       660
     tccaagcaag acctacatgc ggtgcaacaa cagcgtaagg taaagaagat acaaagtact       720
     aaacagaact acagtacgaa cagtgcgagt tgcttccgtt gcggagataa atcacacctg       780
     gcaaatgtgt gcaaacacaa aaccacgata tgttcctttt gtaaactgca agggcacctg       840
     gcaaaggtgt gccttaaaaa gtctgctgct actaaaaacg agatgcgccc agcgaagaaa       900
     ccaaatgcgg tacataccaa ttatgtggat caatctagtg gtcgacagga aatccaagat       960
     gtttgttcgg tcggtgcatt atcacgttgc cagaaattca cactgaatgt ggtagtgaat      1020
     ggaaagatga tacagtttga aattgatact ggttcgccag tcagtattat tagtgctgct      1080
     cataaaaaca aactctttcc acagacaaaa ctacgtggct gcgacacgga actggtgagc      1140
     tactgcaata ccagcatcaa agtactgggt attttggatg ctacggttaa aatgaaggat      1200
     catacaaaga aactaccatt gtatgtggta aactccgaaa agcacccact gttgggccgc      1260
     gaatggctta aagagttttc gctggattgg aacagtgtga tatcgagtac gaacactatt      1320
     aatatggttt ctactactgc cgcttcgtca tgtcgtactg ctgccttaaa gactatactg      1380
     gagcgatacc cgaaagtgtt cgacgcatca atcggtcgga tctctaatgt tcaagctaat      1440
     ttgcgtctaa aagaaaacgc gcggccggtt ttcataaagg cacggaaaat gccgtttaac      1500
     atgataaaaa cggtcgaaga cgagttagat aaactggttg gtgaaggtgt acttacgaaa      1560
     gttgattcta gcaattgggc aacacccata gtgcctgtga agaaatcaca gaaccgagta      1620
     cggatttgtg gtgactacaa gcagaccgtg aatcccaacc ttgttgtgga caagcaccca      1680
     ctacctacag tggacgaatt gttttcttcg ctggctggag ggaagaaatt cagcaagatc      1740
     gatcttgtcc aagcttattt acaactagaa gttgcaccag aagatcgaga aatccttacg      1800
     ctatcgactc atcgtggttt gtaccgtccg aatcgtctga tgtacggtgt tgcttcggca      1860
     cctgccattt ggcaaaggca aatggaatct atactgcaag gcatacaagg agtaagtgtt      1920
     ttcttggacg atataaaaat cactggtgag aacgatgaaa tacatttgag tcgactggag      1980
     gaggttctcc gacgattgga cgatcgtggt atacgtgtaa ataaagacaa gtgccaattc      2040
     tttgaagagg cgattgagta ttgcggatac ttaattaacc agaagggaat ccacaagatc      2100
     cggaagaaag ttgacgcgat acaagatatg ccaagaccga agaatagaga tgaggtccga      2160
     tctttcgtcg gattaatcaa ctattacgga cggttctttc agaacctaag tacggttttg      2220
     taccctctga acaacctgtt gaaaacggat gtaccattca gatggacaag acaatgcgaa      2280
     gactccttca agatggtgaa gagtcaaatg caatccgaca actgcctggt gcattactca      2340
     ccagaactac cactactgct tgcgacggat gcttccccct atggcgtagg ggcggtactt      2400
     agtcacgtat atcctgacgg gacagaacgt ccgatacaat ttgcgtctca aacgttgaac      2460
     cgtatacagc agaagtacat gcaggtggat aaagaggcgt acgcgattgt atttggagta      2520
     aggaaatttt tccagtttat atatggccgg aaatttactc tactaacaga caatcaagcc      2580
     atcacgaaaa tttttggaga gcataaagga ctgccggtga tgtctgcact acgcatgcaa      2640
     cattatgcta cctttttaca aagtttcgat tacaccatca agtttcggaa gtctacagat      2700
     cacgcaaatg ccgatgcgat gtcgaggatt ccattaaatg tgaccgatcc tgataacgtg      2760
     attgaagagt cggattcaat agagctgaat caaattgaga ccctaccttt gacggctgct      2820
     gaattaggac aagccaccgc cgaggatcaa tcagttcgga agctactgca aggcatcaaa      2880
     catggacaag aaattgacgc cacagatcgg tttggtgtag aacaacatga attttcccta      2940
     caaaaaggat gcttgctacg gggaattcgt gtgtacgtgc ctgcttctct ccggaaacgt      3000
     gttttgcaag agttacattc tgtccatttt ggagtaactc gcactaagtc gttagctaga      3060
     ggatactgct ggtggccggg gatagatcgt gagatagaga ccatgatagc aaattgtgca      3120
     gattgccaat cagttcgggc ggaacctgca aagatgaatc tacactgctg ggaaactccg      3180
     agtgcaccat ttcaaagggt gcatgttgat tttgcgggtc catttatgga cacttatttt      3240
     tttatctacg tggatgctta cagcaaatgg ccggaggtac aaatctgcaa atcaacaact      3300
     gcagaaaaca ccgtgaatat gtgtcgtgag atattcagca agttcggaat accttcagtt      3360
     cttgttagcg accatggagt tcaatttaca tcagcggtgt ttgaacattt cttgaagatg      3420
     aatggagtgg tacacaaaat gggagcacca taccatcctg ctacaaacgg ccaagcggaa      3480
     cgatatgttc agaccatcaa acagaagctg aaagcgttga agtgcccaaa gttacaagta      3540
     aatctggaac tgtgtaacat tttgcttatg tacaggaaga tgattcaccc atccactggt      3600
     aaatcgccat caatgctcgt gtttggacgt caaatacgat cgagaatcga tctgctgcta      3660
     ccaaggaatg aaacgtcaaa caaagcagat attgcagttc gtcaattcaa ggatggtgat      3720
     agagtgcgtg tgcgagattt tctatcacaa aataagtgga aatttggggt aattgcggaa      3780
     aaggtcggca aacttcgata tgcggtacgc ttggacgatg gtcgaatctg ggaacgccat      3840
     atcgatcata tagctggtgt gggcgccgaa ttacaaggaa gctcgaagga tactcctagt      3900
     gagaataagt ttaacatgca cgacgagtca accatgccta cagtggttac tccggtctca      3960
     actacgagcc cgagcaagga aactgcggat acaacaccgg tggcgccaac acagaatgct      4020
     acgcaaacaa caacaacgat gcctgttgct gatcctggaa gctctccgcg tgttgaacct      4080
     gacctaccag acagtgctga gggtgtacca aatcttcgac gctccagccg tgttagtaaa      4140
     cctcccctcc gaatgaattt ataaattttc gtagcactaa ggaggatttt tttttacgaa      4200
     ggggagaag                                                              4209
//
ID   Gypsy-44_AnFu-LTR repbase;    DNA;    INV; 175 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-175
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2856-2856 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 175 BP; 61 A; 27 C; 42 G; 45 T; 0 other;
     tgttatatct tactatgcca acctcggtat tggttgacag ttgacagatg tcatgattat        60
     tgggatacag tgaatttgcg ggaaaccaga acagacgcac aagcgaggaa gaaacgggaa       120
     ataaaggaat tactagtgta agaagaaagc tgtttttcac ttctaggata caaca            175
//
ID   Gypsy-44_CQ-I repbase;    DNA;    INV; 5730 BP.
XX
AC   AAWU01034529;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_CQ_;
KW   Gypsy-44_CQ-LTR; Gypsy-44_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5730
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 467-467 (2011).
XX
DR   Genome; AAWU01034529; Positions   10222    4493.
XX
CC   Positions [4756-5244] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           755..1972
FT                 /product="Gypsy-44_CQ-I_2p"
FT                 /translation="MEKITISLGKLKIIEENFKKAPNRSYTRQFLENKLKE
FT                 VKILRNEIIDQLVLLEETLDSNTHARIYSEYTNLVGKLLNFIENKIPLARN
FT                 CSQLTLKNLAKAAIICKRLSMADPFDIKTATALVQPYDGCFDKLDSFIDTA
FT                 NLLKELTKEAHMAMAIKFLKTRLSGKARQCLPEKIATIDELLQHVKEQCAE
FT                 FVTPHSILAKLKNTRQNAGVEKFCTDVENLTSQLRNVYISQKIPGDVAKSM
FT                 ASKAGVDTLISGIKNPETKLILKAATFNDIKEAVQKINENSQTNSETNEIQ
FT                 VLHYRRTQSNQHGNYRGRSNFQRGNFNRRNFHDNQNRYDNNRNHSYDNRNI
FT                 YNNNRNRFNDNRNQNNNFGRTRDTQSRNVNRNVFISENVNHPSTAPQVDVN
FT                 QGHGEQITHPRT"
FT   CDS           2029..5589
FT                 /product="Gypsy-44_CQ-I_1p"
FT                 /translation="MCEKPCTLIVDTGADVSLIKENILKPITNIYTAQKCI
FT                 LNGITEGKSESIGLAHTNVEINGVEIPIDFQVVESNFPFRTNGILGRDFLT
FT                 KYGCNICLKSWLLTFSVNNEIFEIPIEDKFKDELVIPPRSQVVKKMTIPGI
FT                 KKDSVILADQIKPGLFIGNSIVNSKEQYINILNVKPTAETIPQNYKPKIIP
FT                 LEKFIFKNTQETEIKNLIRNEKLLKELNVSNIADEEIKEKLRQLCSNYNDI
FT                 FAMSDEPLSVNNFYKQTIRLDSESPVYTKNYRIPETHKIEVNKQVQKMLDD
FT                 NIIRPSISPFNSPILLVPKKSSNDEKKWRLVVDFRQLNKKIIGDKFPLPRI
FT                 DEMLDSLGRAKYFSTLDLTSGFHQIELDENSKQFTAFSNDFGHFEFNRLPF
FT                 GLNVSANSFQRMMMIALSGLPPECAFLYIDDILVIGCSVKHHLSNLEIVFK
FT                 KLRHYNLKLNPMKCNFFKHDVTYLGHHISENGIQPDPSKFDVIKNYPEPKD
FT                 ADEIRRFVAFCNYYRRFIPKFAEITHPLNKQLRKNSVFDWNNECKTAFETL
FT                 KKKLMSEPILKFPNFKKEFVLITDASKVACGAILAQCYDNVDLPIAFASKA
FT                 FTKGESNKSTIEQELTAIHWAVTYFRPYLLGRKFIIKTDHRPLVYLFSMKN
FT                 PSSKLTRMRLDLEEFEFTVIYVQGRLNVGADALSRIQIDSETLKQMTILRV
FT                 TTRAMVSKNEPNTRADVDDSVNDELDHLKVIESLNNTEVYDMPKLCIRPKN
FT                 NSNAFHYKIASKNYKKDLTLESSIQINNYTDLKNMFKNLEKSAKHLNIGKI
FT                 ALALPSTIFEIISVHNFKIHGNQVLDKLKIILYQQQQIIENKELVNQIIAD
FT                 NHDSAFGGHVGINRLYRKLKGLYKWANMKNTIKNYIKNCITCKQNKHTTKT
FT                 NENFTLTPTPLKAFDSIAMDTIGPFPKSNSDNRYALTIQCDLSKYIIVKPI
FT                 KDKQASTIAKAFIESCILVYGTPSIIRTDQGTEYKNEIFNKISEMLQYTHT
FT                 FSTPYHPQTIGNLERNHRCLNEYVRQFINESHTDWDDWLPYYSFCYNTTPH
FT                 SDLPYSPFELVFGKIASIPTNIIKTKQVEPIYNFDNYYYELKHKLQYTAMK
FT                 TRELVEKIKNNRKNKQQQVANPIQIKINDLVLIENQNRSKLDKVYKGPFKV
FT                 VAIEHPNITILNENNELYTLHKNRIIKF"
XX
SQ   Sequence 5730 BP; 2283 A; 1011 C; 933 G; 1503 T; 0 other;
     cgatatggcg accgtgaaca gttgacgtga aactactaaa agtacaaagt gataagtgtg        60
     actgcaaatc tttaaatcct aagatccaga aagatgggtt ggtttgttgg agataccatc       120
     gtcacgaatg aagtcgcgaa agacgaaaca agaattattg ccatcatttt agtgattcta       180
     gtgattgtac taatcataac cggacttttt aaagcatacc acgctttcat taagagccat       240
     ataacaaagt cagcagcaag agaagttgct ctgaacaaca taacgtgcaa atgaactaaa       300
     gagtttaaaa atacaatatt gactcagagc cacagtggaa aagggaagaa aaagtgattg       360
     aaatcagcta ataacatgac ccagcaatct tcaatgagag cattaagttg agtgaaacct       420
     aacaatgcag cagaatacta aatcagaagt ccaacacccc aatctgggtg tacagcgaag       480
     tacagcagcc caaaccgagt ggagcacagc gaagcaattt tgatgtcatc caaatccagc       540
     acagaagatt ttcaacaaca agccgagtgg agtacagcga aggtcagcat cccaattcaa       600
     gtgaagcaca aagaactacg ctaactcaaa gaaatccagc aactcacctg acaagtccag       660
     cagcaatgtc atccaaatcc agagcagatg attttcaaca agtaagcaaa ctactcaatt       720
     attaattatc cagaggcaaa ttaagtagag tcacatggaa aaaattacaa ttagcttagg       780
     aaaattaaaa attatagaag aaaatttcaa aaaagcacca aacaggagct atactagaca       840
     gttcctagag aataaactta aagaggtgaa gattcttagg aacgagataa ttgatcagct       900
     agttttactt gaagaaacct tagattcgaa tacacatgca aggatatatt cagaatatac       960
     caaccttgtt ggaaaattac taaatttcat tgagaataaa atccccttag caagaaattg      1020
     ctcacaattg actttaaaaa atctagccaa ggcagccatt atttgcaaaa gattaagtat      1080
     ggctgaccct ttcgacatta aaactgcgac ggcactcgta caaccgtacg atggctgttt      1140
     cgataaactt gattcattta ttgatacggc taatttatta aaagaactca ctaaggaagc      1200
     tcatatggct atggccataa aatttttaaa aacaagatta tcgggtaagg caagacaatg      1260
     cctaccagaa aaaattgcaa caattgatga actactacag catgtaaaag agcagtgcgc      1320
     ggagtttgtt actccgcata gcattctggc taaacttaaa aacaccagac aaaatgctgg      1380
     tgtcgaaaaa ttctgtaccg atgttgagaa tttaacctct caacttcgaa acgtatatat      1440
     ctcacaaaaa ataccggggg atgtagcaaa atctatggcc tcaaaagcag gcgtagatac      1500
     actgatttct ggaataaaaa atccagaaac aaaattaatt ctgaaagcag ctacatttaa      1560
     cgacataaaa gaagctgtcc agaagataaa tgagaattcg caaacgaatt cggaaacgaa      1620
     tgaaatacaa gtattgcatt atagacgcac acaaagtaat caacatggaa attaccgagg      1680
     tagaagtaat ttccaacgtg gaaatttcaa tcgtagaaat ttccacgata atcaaaaccg      1740
     ttacgacaat aatcgtaacc attcctacga taaccgaaac atttataata acaaccggaa      1800
     ccgttttaac gacaaccgga accaaaataa taatttcggg agaacgcgag atacgcaatc      1860
     ccgaaacgta aaccgaaacg tttttatttc ggaaaacgta aaccatccgt cgactgcccc      1920
     ccaagtcgac gtgaaccagg gccacgggga gcagattaca cacccaagaa cgtaaatatt      1980
     ttcaatttta atgtacacta ttcaattttt gttaccatca agttggatat gtgtgaaaaa      2040
     ccctgcacac tgatagtaga tacaggtgca gatgtatcat tgataaaaga aaatatttta      2100
     aaacctataa ccaacatata cactgcacaa aagtgtattc taaatggaat aactgagggt      2160
     aaatctgaaa gtattggcct cgcgcatacg aacgtagaaa ttaatggagt tgaaattcca      2220
     attgatttcc aagtcgtaga aagtaatttt ccttttcgca caaatggaat tttgggtaga      2280
     gattttttaa cgaaatatgg atgtaacatt tgtctaaaat cttggctttt gacattctcg      2340
     gtaaataatg aaatttttga aattcctatt gaagataagt ttaaagatga attagtcata      2400
     ccacctagaa gtcaggtagt aaagaaaatg actatacctg gtatcaaaaa ggacagcgtt      2460
     attttagctg atcaaataaa accaggatta ttcatcggaa attcaattgt aaatagtaag      2520
     gaacaatata taaatatttt aaatgtaaaa ccaactgcgg aaacaattcc acagaactat      2580
     aaacctaaga ttattccact agaaaaattt atttttaaaa atacacaaga gactgaaata      2640
     aaaaatttaa taagaaatga aaaattatta aaagaactga atgtgtctaa tatagcagat      2700
     gaagagataa aagaaaaact tagacagctt tgctcaaatt ataatgatat tttcgctatg      2760
     agtgacgaac cgctttcagt taacaatttt tataaacaaa cgataaggct agattcagaa      2820
     agccctgtat atacaaaaaa ttataggata ccagaaactc ataaaatcga agtaaacaaa      2880
     caagtacaga agatgcttga tgataacatt ataagaccat cgatttctcc tttcaactcg      2940
     ccaatactac ttgtaccaaa aaaatcaagt aatgacgaaa agaaatggag gcttgtagta      3000
     gattttcgtc aattaaacaa aaaaataatc ggagataaat ttccacttcc tcgcattgac      3060
     gaaatgctag acagcctagg tagagcgaaa tatttttcaa ctctagatct tacttccggt      3120
     tttcatcaaa ttgaactaga tgaaaactcg aagcaattta cagcattctc gaatgatttt      3180
     ggtcatttcg aattcaaccg attacctttc gggttgaatg tatcggcgaa cagtttccaa      3240
     agaatgatga tgatagctct cagtggttta ccacctgagt gtgcttttct ttacatcgat      3300
     gatatccttg ttattggatg ttcagtcaaa catcacctca gcaatctgga aatagtattc      3360
     aagaaactaa gacactacaa tttaaaactc aaccctatga agtgcaattt tttcaaacac      3420
     gatgtaactt atttaggaca tcacatttct gaaaacggta ttcaaccgga tccgtcaaaa      3480
     ttcgacgtca taaaaaatta ccctgaacct aaagatgcag acgaaatcag aagatttgtc      3540
     gcattttgta attattacag gcggtttata ccaaaatttg ccgaaataac tcaccccttg      3600
     aataagcaat tacggaaaaa ctcagtgttt gattggaata atgaatgtaa aacagcattt      3660
     gaaacactaa agaaaaaact tatgtcggaa ccaattttaa aatttccaaa ttttaaaaag      3720
     gaatttgttt taattacaga tgcctctaaa gtggcatgtg gagcaattct tgctcaatgt      3780
     tacgacaatg ttgatttgcc aatcgcgttt gctagcaaag cgttcacgaa aggcgagtct      3840
     aacaagtcaa caattgagca agagctaaca gctattcatt gggccgttac atattttcga      3900
     ccttacctac tgggaagaaa attcataata aaaacagatc acagaccact agtctacctg      3960
     ttttctatga aaaacccaag ttctaaacta actcgaatga ggttagattt agaggagttc      4020
     gaatttacag taatatacgt acaaggcaga ttgaatgtag gagcagatgc cttgtcgaga      4080
     attcaaatcg actccgagac gctcaaacaa atgactattc tcagggttac aactagagca      4140
     atggtcagta aaaatgagcc aaacacaagg gctgacgtag atgattcagt caacgatgag      4200
     cttgatcacc tcaaagtaat tgaatcactg aacaataccg aagtttacga tatgccaaaa      4260
     ctatgcatta ggcctaaaaa taattcaaac gcgtttcatt acaaaattgc tagcaaaaat      4320
     tacaaaaagg acttgacact agagtcaagc atccaaataa acaattatac agatttaaag      4380
     aacatgttca aaaatctaga aaaatctgca aaacatttga atattggaaa aatagctcta      4440
     gcgctaccta gtacaatatt tgaaataatt agtgtgcaca attttaaaat acatggaaat      4500
     caagtacttg ataaactgaa gataatatta taccaacaac aacaaattat agagaataaa      4560
     gaactggtaa atcaaattat tgctgataat catgattctg catttggtgg acatgtaggc      4620
     attaatagat tatatcgcaa acttaaggga ttatacaaat gggcaaatat gaaaaatact      4680
     ataaaaaact atattaaaaa ttgtattaca tgtaagcaaa ataaacacac tactaaaacg      4740
     aacgagaact ttacattaac accaactccg ttgaaagcat ttgattctat cgctatggac      4800
     acaataggtc cattcccgaa atcaaactca gataaccgtt atgctttgac aattcaatgc      4860
     gatttgtcca agtatataat agttaaacca ataaaggata agcaagcatc aacaatagcc      4920
     aaagcattta ttgaaagttg catattagtt tatggtacac cttcgattat ccgtaccgat      4980
     caaggaaccg aatataaaaa tgaaatattc aacaagatat cagaaatgct tcaatataca      5040
     catacatttt ctacacctta ccaccctcaa actattggca atttagaaag gaaccatcgt      5100
     tgcttgaacg aatatgttag gcaattcatt aacgaatctc acactgactg ggacgattgg      5160
     ttaccttact attcattttg ttacaatacc acaccacact ctgacttacc atatagccct      5220
     tttgaattag tttttggtaa aatagcatca atacctacaa atattataaa aacaaaacaa      5280
     gttgaaccaa tatacaattt tgataattac tattacgagc taaaacacaa attacagtat      5340
     acagcaatga aaacaagaga attagtagaa aaaatcaaaa ataatagaaa aaataaacaa      5400
     cagcaagtag caaatccaat tcaaatcaaa attaacgatt tagtattaat tgaaaaccaa      5460
     aacagaagca aattagataa ggtttacaaa ggtcctttta aagttgtagc aatagaacac      5520
     ccaaatatta caatacttaa tgaaaataat gagctataca ctttacacaa aaacagaatt      5580
     ataaagtttt agcatcacta gcattcacca ataaaaataa aacaaacata aataaaaatt      5640
     gtaaaacact actgtaaaaa caaaaaagag aaatctaacg aaagcattta acattgtgaa      5700
     tagctacgct attctcttaa aaggggaagg                                       5730
//
ID   Gypsy-44_CQ-LTR repbase;    DNA;    INV; 395 BP.
XX
AC   AAWU01034529;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_CQ_;
KW   Gypsy-44_CQ-I; Gypsy-44_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-395
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 468-468 (2011).
XX
DR   Genome; AAWU01034529; Positions    4492    4098.
XX
SQ   Sequence 395 BP; 120 A; 112 C; 49 G; 114 T; 0 other;
     tgtagcgtac cagatgtaac atatcgaatt atccttatcc ttggattccc ataaatcctt        60
     cccaaagctt actcaaattt cattacataa cttaagctat tatccgcatt cctccttctg       120
     agaccttctt tgcataccca cacacgacga cactcaagta ataaacagaa ccttttcctc       180
     attaccatga cctccttttt attgcaacca aatgttaacg ctgcgctgac tcttcaagta       240
     cagcgcattt gtttaaaccc tggccacatg tttgaacaac atgttgaagc cagccaacgc       300
     tttcgctagg tttcccaaac tctaagctca gaataaaata ccattcaagt ctgaacctct       360
     gcagaacaca gtcattcata tcacaacgcc taaca                                  395
//
ID   Gypsy-44_DEl-I repbase;    DNA;    INV; 5638 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   02-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_DEl-I.
XX
NM   Gypsy-44_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5638
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 484-484 (2012).
XX
RN   [2]
RP   1-5638
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           860..2347
FT                 /product="Gypsy-44_DEl-I_1p"
FT                 /translation="MLGEEEPAEDISVRANGDCFICLRGIEYAAQLLSANC
FT                 GHTFHRVCFNTKVRNHKNCPVCKADLKSGSESASRPSSALGRSQIDLSKEL
FT                 AGNPITDDFNMEELQQAVKESNKRTEALAETISAGFQRMLTLLENQKQASD
FT                 AGNRLIESDEQLQERGNFIAAGHSSATGNLPPIESRPVAENSSPVGNRSTI
FT                 GNESEARFLHMNTDLRPDRISQIMINWKLRFSGRSNMSIDEFIYRLEALTY
FT                 QTLNGNFDLISRYISNILDGSANDWFWRYHKSVQLSQGTRSLQWVNLRAAM
FT                 RAQFKDELTDLNIRSAIDRRKQRENESFDEFYESIVLLADKLSVPLSDLAL
FT                 LETLRANLLPQIQHELLYEKVTSTAHLRHLVRTREVFMLSLTKNKPTSQRS
FT                 QLPVRRTIHAVETHGDCEEDFSDEDESLEVAAINLTCWNCRAKGHRYQDCL
FT                 CERQVFCYGCGQPDTYKPSCTKCTGSKNLVDRAPVASARKKQTANMTQTDL
FT                 "
FT   CDS           2260..5559
FT                 /product="Gypsy-44_DEl-I_2p"
FT                 /translation="MYWLKKLSRSCTSGKCTEETNSEYDSDGFVEPPQSTK
FT                 TILPDKTTNLPVPKPFHSPPARRKRSCLRISEYYRKIRNEKQALISAIVGR
FT                 DVRPYAEVTIFGKQMIGLLDTGASISCIGGDFANELSCRNVNFKQMSSNVR
FT                 TADGQSQTIIGKLNVDVTYRETTKRLNLYIVPSLVQSLYLGIDFWTAFDML
FT                 PSGLSVRDGIASVACPSVEEAVAVSQRNLTEHQRTLLEKAIQSFPSFSEKG
FT                 LGKTNLLHHEIDVGSTKPIKQRHYPVSPAIEKLMYEEIDRMIGLGVIEESN
FT                 SSWSSPVVIVRKPGKVRLCIDCRKVNEVTRKDAYPMPLIEGILSRLPKAEY
FT                 ITSLDLKDAYWQIPLDPDSKDKTAFTVPGRPLYQFKVMPFGLTNAPSTMSK
FT                 LMDRIIPAYLRNEVFIYLDDLLIISDTFERHIKVLREIAEALEKAGLTINV
FT                 QKSRFCVPEVHYLGHIVGHGTIAMDVVKIEAIKEYPTPQSLKQLRRFLGMT
FT                 GWYSKFIENYASITSPLTDSLKKKKTFTWSSAAEQAFQDLKAAMCKAPVLH
FT                 MPDYSQPFYIHCDASHTGVGGVLMQVNQEGDEIPIAFMSRKLNDCQRSYSV
FT                 TEKECLAAILSIKKFRAYVEGHTFTVITDHASLKWLMSQSDLSSRLARWAL
FT                 KLQGYSFTIQHRKGIRNVVPDALSRTFTEDLSSLEIENFIDLCSPQFQSKQ
FT                 YQELRAKLMQAEKQFPDIKVVKDCIYRRTEHASAERLADDMVWKLWLPQEL
FT                 ISVALQKAHDSPLSSHCGINKTLERIRRHYFWPNLVNDVKDYVNNCSVCKT
FT                 TKHANYVLRPPLAKTGETQRLFQKLYIDYLGPYPRSKSGYVGIFVVLDHFT
FT                 KFPFLRPVKNFTAEAILKYLEEDLFHCFGIPEVIVSDNGVQFKSKIFNNLL
FT                 KKYGIQHAYTAVHAPQGNASERVNRSIIAGIKAYVHPDQSNWDVKLSSICC
FT                 SLRSSWHSAVNNTPYRLAFGQHMITEGSTYKLLRELDLLEDRAIQVSRDDS
FT                 VDMFRGDAVKAMRQQQRRNEKSYNLRSREVSYTVGQEVYRRNFQQSKFVKG
FT                 FNAKLAPTFVKARIRRKLGTTYYELEDLQGKSIGKYHAKDIKQ"
XX
SQ   Sequence 5638 BP; 1802 A; 1064 C; 1196 G; 1574 T; 2 other;
     gaaataatta tggcgcccaa acgtgtgagg cccgaccttg gctggccccg atatagaata        60
     attagtcaac ttcatcaacc agtgcgtaat ttccawaaac cactggagac taaaaatatg       120
     gtcagattta ttacttttct ttaccttttc taacccaaac agaactattt gcaccttgac       180
     tttgatttaa catgtatctg gattagcgta ctattaatat agaaacgttc cgaacaattt       240
     taatttcgat gagttattaa agagaaaaca gctaaatcaa gtaggaacct gcgattggat       300
     gtggatattt tagaagattt ctatcacctg ccacgcagca aaataaaaac tctgataggc       360
     tttggaagta caacaggatt agatacactt ttataataag ggttctaccg gtacttacag       420
     tattctcgaa aggtgcttag ggtttccaaa acgctgcttt aagatacgaa ctaatctctt       480
     gccaggacta taagcttgga tctagatgga tattagtggc agtaccgctt tggaattttt       540
     gtttttttgt tcaatttagt tattgcaggt tgcaaacaag taaaaagcgt aacagaggtg       600
     tgccagagta gaagcgttag ttagtagctt ttaacgtttt ggatcacaca tttgtacgaa       660
     cgttggattg tctgcaatag ttaaacctaa tttttgttcg ttactcttga tacacatgct       720
     taaacaatta cgattactag acacgaagat tgttttgatt cccggaaaat tatttgtaat       780
     ttaaaaagaa aaaaaaaact ttttaaatag tgagttatct ttttgattaa ttataagaaa       840
     aatttatgat tattaagaaa tgttaggtga agaagaacca gcagaagata tttccgtcag       900
     ggcaaacggt gactgcttta tttgtctaag aggaattgaa tacgctgctc agttattatc       960
     tgctaactgt ggtcatactt ttcatcgagt ttgttttaac acaaaggttc gaaatcataa      1020
     aaattgtcct gtgtgtaaag cagatttaaa atccggtagt gaaagtgcaa gtagaccatc      1080
     gagtgcattg ggtaggtctc agattgattt gagcaaggaa ctagcaggaa atcctattac      1140
     agacgacttt aacatggaag agttacagca agccgttaag gaatctaata aaagaacgga      1200
     agctttagca gaaactatta gcgctgggtt tcaacgaatg ttaactcttt tggaaaacca      1260
     aaagcaagcc tcagatgctg gtaataggct aatagagagt gatgagcagc ttcaagaaag      1320
     agggaacttc attgcagcag gacattcttc ggctacagga aatcttcctc caatagaaag      1380
     taggcctgta gcagaaaatt catctccagt aggaaatcgt tctacaatag gaaatgagtc      1440
     cgaagctagg tttttgcata tgaatacaga tttaagacca gatcgtatta gccagataat      1500
     gataaactgg aaactgcgtt tctcaggtcg gtcaaacatg tcgattgatg aatttatata      1560
     tcgacttgaa gcccttacct atcaaactct aaatggtaac tttgatctaa tatctcgcta      1620
     cataagcaat atattagacg gaagtgctaa tgactggttt tggcgttatc acaaaagcgt      1680
     tcaactaagt cagggtacta gatcattgca gtgggtcaat ttgcgtgccg ctatgagagc      1740
     tcaatttaaa gacgaactta cggatctcaa cattcgctca gcaatagatc gacgtaagca      1800
     gagggaaaac gaatcgtttg atgaattcta tgagtcgatc gtattgttgg ccgataaact      1860
     ttcggttcca ttgtcggacc tagcattgtt ggaaacttta cgggctaatt tgctgcctca      1920
     aattcaacat gaacttctgt atgaaaaagt gactagcaca gcacacctac gtcacttagt      1980
     tagaactcgt gaggtattta tgctgagctt gacaaagaat aaacctacat cgcaaaggtc      2040
     acaacttcct gtgcgacgta ccattcacgc tgtagagacg catggcgatt gcgaagagga      2100
     tttcagcgat gaagacgaga gtcttgaggt agcagccatt aatttgactt gctggaactg      2160
     tcgagcgaaa ggccatcggt accaagattg cctttgcgaa cggcaggtgt tttgttacgg      2220
     ctgtggtcag cctgatactt ataaaccatc ctgtacgaaa tgtactggct caaaaaactt      2280
     agtagatcgt gcaccagtgg caagtgcacg gaagaaacaa acagcgaata tgactcagac      2340
     ggatttgtag agccacctca atctacaaaa accattctac cagacaaaac cacaaacctg      2400
     ccagtaccaa aacctttcca ttcaccacca gcaagaagga aaagatcgtg cttgcgaatc      2460
     agtgaatact ataggaaaat tagaaatgaa aaacaggcct tgatctcagc catagtcggt      2520
     cgcgacgtac gtccttatgc cgaagtcact atttttggga aacagatgat agggttgttg      2580
     gataccggcg catcaatcag ctgtatagga ggagactttg ccaacgaact ttcctgtcga      2640
     aatgtaaatt ttaagcaaat gtcstcaaat gtgcgcacgg cagatggtca gtcacagact      2700
     ataattggta aacttaatgt agacgtcact tatcgagaga caacaaagcg actaaatttg      2760
     tacatcgttc cgtcacttgt tcagtcgtta tatttaggca ttgacttttg gactgcattt      2820
     gatatgttac cttctggatt gtcagtccga gacggtattg ctagcgtagc atgtccgagt      2880
     gtagaagaag ctgttgctgt ttcgcaacgt aatttaacag agcaccagcg tactttattg      2940
     gaaaaagcta ttcaatcatt tccatcattt tctgaaaagg gtctgggtaa aacaaatttg      3000
     ttgcatcacg aaatagatgt aggtagtaca aagcccatta agcaacgaca ttatccagtt      3060
     tcccctgcta tcgaaaaact tatgtatgag gaaatagatc gtatgattgg ccttggagtc      3120
     attgaagaat ccaatagttc gtggtcttcg ccagtagtga tcgtaagaaa gcccggcaag      3180
     gtgcgcctct gtatagattg tcgtaaagtc aatgaggtga cacgaaagga tgcttatcct      3240
     atgccactaa tagagggtat cttaagtcgt ctaccaaagg ctgagtacat cactagcctg      3300
     gacctaaaag acgcgtattg gcaaatacca ctcgaccctg attctaaaga caaaaccgcc      3360
     tttacagttc ccgggagacc tttatatcaa tttaaagtca tgcctttcgg ccttacgaat      3420
     gccccttcaa cgatgtcaaa gttaatggat cgcataatcc cagcctacct tcgaaatgag      3480
     gtattcattt atctggatga cctccttata atttctgata cttttgagcg gcacataaag      3540
     gtgttgcgcg aaattgcaga agcattggag aaagcaggtc ttaccataaa cgttcaaaaa      3600
     agtcgatttt gtgtacctga agttcattat ttaggccaca ttgtcggtca tgggaccata      3660
     gccatggacg ttgtgaagat tgaagccatt aaagagtacc ccacaccgca gtcgttaaaa      3720
     caacttcgta ggtttttagg tatgaccggg tggtacagta agtttattga gaattatgct      3780
     tcaataacat ctccgcttac agattcctta aaaaagaaga aaacatttac gtggtctagt      3840
     gcagcggagc aagcatttca ggatctaaaa gcagcaatgt gtaaagctcc tgttcttcat      3900
     atgccagatt attcacagcc attttatata cattgtgatg ctagtcacac tggagttggg      3960
     ggagttttga tgcaagttaa ccaagaagga gatgaaattc caatagcatt tatgtcacga      4020
     aaacttaatg attgtcagcg aagctattcc gtaacggaaa aagaatgctt agcggccatt      4080
     ctgagcataa aaaaatttcg agcatacgta gaaggacata cctttacggt aataaccgac      4140
     cacgcttcac taaagtggct gatgtcgcaa tccgatctaa gtagccgctt agcgagatgg      4200
     gcactcaagc tacaaggata tagttttacc attcagcaca gaaagggtat taggaacgta      4260
     gttcccgatg cattatcacg gacgtttact gaggatttat ctagtttaga aatcgaaaac      4320
     ttcatagatc tctgttcacc acaatttcaa tcaaaacaat atcaagaact aagagcaaag      4380
     ctaatgcaag ctgaaaagca gtttccggat atcaaagtcg tgaaggattg catttataga      4440
     aggacagagc atgcgtcggc tgaaagatta gcggatgata tggtttggaa actatggctg      4500
     ccacaagaac ttatctcggt cgctttacaa aaagctcacg atagtccgtt atcctcgcat      4560
     tgtgggatta ataaaacact agaaaggatt agacgacact atttttggcc aaatttagtt      4620
     aatgatgtta aagattacgt caacaattgt tcagtgtgca aaactactaa gcatgccaac      4680
     tatgttctta gacctcctct ggctaaaaca ggtgaaaccc agaggttgtt tcagaaacta      4740
     tatattgact acctaggccc ttatcctcga tcaaaatcag gatatgtagg aatttttgtg      4800
     gtccttgatc actttacaaa gtttccattt ctaaggccag ttaaaaactt cacagccgaa      4860
     gctattctta agtatctaga ggaagactta ttccattgtt ttggaatacc tgaagttatc      4920
     gtgtccgaca acggagtaca atttaaatcc aaaattttca ataacttgct taaaaagtac      4980
     ggcatacagc atgcttacac cgctgtgcat gctcctcaag gtaacgcgtc agagagggtt      5040
     aaccgtagca ttatcgctgg aatcaaagct tatgttcatc cagatcaatc caattgggat      5100
     gtcaaactta gtagcatatg ttgttcgctt agatccagtt ggcattcagc tgttaacaac      5160
     acaccttatc gactagcttt cggtcagcat atgatcacag aaggttctac atataaacta      5220
     ctaagagaac tggatctgtt agaggatcgg gctattcaag tcagtcgaga tgattcagtc      5280
     gatatgttta ggggagatgc agtgaaagct atgaggcaac agcaacgtcg gaatgaaaaa      5340
     tcgtataatt tgagaagccg agaagtgtca tatactgttg gccaggaggt gtacagaaga      5400
     aattttcaac aaagcaagtt tgtgaaaggt tttaatgcca agctagcgcc aacgtttgtg      5460
     aaagctagaa taagaaggaa gctaggtaca acctattacg aacttgaaga cctccaagga      5520
     aaatcaatag gaaagtacca cgcaaaagac ataaagcagt gataaatgtt ggctctccaa      5580
     gcgtgtatcg cacattgtgt gtttatacct cccaagtgcg attttagcgg tggggact        5638
//
ID   Gypsy-44_DEl-LTR repbase;    DNA;    INV; 2587 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2587
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 485-485 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2587 BP; 886 A; 487 C; 440 G; 774 T; 0 other;
     tgtagaaggg cttgttcgag ctctcttata aaataaaaag aaaacaaaaa gaaatcccga        60
     aaagtaggca gtatagctta ggtcttatag tcagaatgct agcttgtacc aagtgcagcc       120
     catcatgatc aggtggcgcc ctctaacgcg ggaacccgaa ctttgtcgta ctggcaacgc       180
     aacaaatgca atcagctgag tagaagacag tggtctgtgg tcaatatcaa ttttgacaga       240
     gctatatttc cgttttgggg taacctgcta agctcacggc tttagcttat tcttttcgat       300
     ttccaccgcc aacgatacaa gtcgtccgaa ataaattttc tccaacaagc agaccgacct       360
     cgtggtttgg ctacttggtt agaaaaataa accgtgagta accatcaacc aacagaaaaa       420
     gcaacgaaaa cttattagtg cttttattta attttgttta aagaaatcta ttcgaataac       480
     gcaacacgcg ttcaacggtg gctgaataca gtgaactatc agaggccaat tcggatgctg       540
     gcttagcacc accatattcc tcctgagacc gcgcctaacc ctaaccgcac tggcttacaa       600
     tactgcccag tggccataac agtagcgctg cctaacagcc gtagcccgat cagcggctac       660
     acagcagcct aattcggccc aacagccagt acagcagagc aggtgcagca acagcagggc       720
     tacccagcag cccgaataag ccccgatacc cagtggaaat agagcaggtg cagcaaaccc       780
     agggctatct tcagcagcta tactaaagcc tagataggcc caacaagctg tccaatgtag       840
     agcagcagcc gcagcagcat cagcagtagc tgttgctact catcctaacc ctacctcaac       900
     ataaatctaa tgcacgttgt tgctatattt ttctcagttt ttataagaac aaatctacat       960
     agtatgaata taaatattcg ataaaaaaat gtaataatta taaattagag ttcttaattt      1020
     gctgtggttt aagatattag agagaaaaat gataggcaaa gagatcaacg ttgctgctgc      1080
     gaaccggtga aaacttacag tgaaaaaaaa atatataaat aaaaacttgg cgaaataaat      1140
     aatatgtgaa tgtgctagta aatgtgtaat cccgcagttt aaacgcgcaa attttataaa      1200
     atgcatatct aaaatgttaa cgagaaaaaa aattaacaaa ttaaaagtaa acaatgttgc      1260
     cgaatcaaaa ctaaaacatt gttgactaaa aataaacccg acgaccatat aactaaataa      1320
     acatgtacaa gaagtcgccg ctgccaaaga tctttcgccg ccggagttaa tcgactgtaa      1380
     gttaccttta tcataccttg tttcattatt tcctttattt agttatttcg tcactggtca      1440
     aaccgcataa aatttactat gttttgtttt gaatatgcat atttgagcgt ttacgctgcg      1500
     ttgctgaccg ttgcttgcag ttctaaagct ctgttttaat aaacgagggc agatacaaaa      1560
     gttctttcct taagatttac acgcgcagtc acttataaat ttaaaccctt aaatatttac      1620
     aatgatcatc tactattaac ctatatgaga tttttatata aatttatata tatatagcaa      1680
     ttattattta tatatattaa tcccgttctc tttcagcaac tttgaactct ttgcaaattt      1740
     tcgacaagaa aaaaaagaaa aatgaaatga attaattaga cagttttttt aggtatgtaa      1800
     ataaaactga attttttttg tgaagcacta atttaaaaaa aataaatatt tttttttaaa      1860
     gaaaaaaaaa taaataaata aaatcgaaat gatagagagc ttttgttaga aataaaattt      1920
     acctatattt aaaaattctt tatagtattg tttaaaaatt taaaaccaca aatatgaaaa      1980
     atttatatga aaaccgttta tttttctaat gtgaaataat attaaaataa acaaatttat      2040
     cacagaataa gcttgtatga aacaacaaca aaaatatctc agcccatatg aaagggataa      2100
     ttcgtaatta taatttgtaa taaaagaaaa tgaattttaa ctaagtttct ccttatccgg      2160
     ggatcatgga agtcgagtgt cgtttaaaaa gtgattggta gtcactccaa gggatcctga      2220
     agaggaaatg ttggaccatt aggatcatgg tagggtgggc acttcgcctt cttggcgtag      2280
     taaaaggagt gatgttttgg caagtgtatc tctcacgttt tgttttgttt tcgtattcta      2340
     ttctttcttc aacccttttc ttttattttt tttttttctc tctagcttcc ccaatgtacc      2400
     caaatgaata gtacgcgaat tttaagttat ttttactagc atacgagcct tataacgtgg      2460
     cggttttctt ttcttcgttg acccacccca tgccgaccag acaaatgaaa agccgaggat      2520
     gacgcgtact ccgcaaacac gttaattttt ccaccagctc tttcctaata gatcgttata      2580
     tgctaca                                                                2587
//
ID   Gypsy-44_DWil-I repbase;    DNA;    INV; 6213 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_DWil_;
KW   Gypsy-44_DWil-LTR; Gypsy-44_DWil-I.
XX
NM   Gypsy-44_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6213
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1857-1857 (2012).
XX
RN   [3]
RP   1-6213
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..1663
FT                 /product="Gypsy-44_DWil-I_1p"
FT                 /translation="MSWSYRDIKKESDSDEDIIVQSRPQALDQTEMDPQTL
FT                 KVIIESAVSTALNAQEQRIRGEIHAELEHLRNQVNSFRIEAPQVQVYESVT
FT                 IDPSIRCEVRLDAAKSVPNFNGDHEEYVSWRQSAIEAYQAYKGYYGSETHY
FT                 QAVIILKNKVCGAARAVLTSHNTVLNFDAIIARLDCTYADKTSLRVLRHQL
FT                 EMVRQGDLELMQYYDEVEKKLTLITNKIAMTHEEQAAVILNTEIRSDALHA
FT                 FMAGLRRPIKALVIPAQPKDLPSALALAREAENSIERSMFAATYAKAIQDR
FT                 SHPGENNKQGNRSMPRQGKHFEKNPHFTGKQVQNRPQQGEQGPTSNSKQLR
FT                 AQDQAQPMDVDPSVSKLRQQTAWGKTRGSATYGESQKRQNASERMTGQSRQ
FT                 NVNNISQKDSAQDQQYARIAEAAVAEASDENDSIPDNDLLNFLENAPNCRS
FT                 SSDSWLVEH"
FT   CDS           1597..4698
FT                 /product="Gypsy-44_DWil-I_2p"
FT                 /translation="FAKFFRERSQLPFVERQLAGRTLKILIDTGAAKNYVK
FT                 PVKELRNITLVDTPFTVNSIHGSSKIKEKCFMRIFGKNAPFFILDTLDTFD
FT                 AIIGFDLLTQAGVTLNLHSGSITYGSTAEALQHHTCDSVNFTRIDDIIVPD
FT                 SVREEFKKVILNRIGAFSTSNEALPYNTSVIATIHTIDNQEVYSKSYPYPM
FT                 GVADFVNNEIAQLLKDGIIRPSRSAYNSPAWVVDKKGLDSNGNKNKRLVID
FT                 FRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEKDRA
FT                 KTAFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREQIGKICYVYVDDVL
FT                 IFSENEAEHVKHIDTVLQLLCNANMRVSKEKTKFFKESVEYLGFIVSSDGT
FT                 KTDPEKVKAIQEYPEPKSLYALRSFLGLASYYRVFIKDFASIARPLTDILK
FT                 GENGKVGKHMSKKVPIDFDELQRHTFDRLRNILASEDVILMYPNFQKPFDL
FT                 TTDASADGIGAVLSQGGRPITMISRILKQSESLYATNERELLAIVWALGKL
FT                 QNYLYGTRELHIFTDHQPLTFSVSQKNTNARIKKWMAFIEERNAQIHYKPG
FT                 KENLVADALSRQNVNALQDEIQSCAATVHSELSLTYTIETTDKPVNLFRNQ
FT                 VILEEARYNLHRRLILFGSKTRHVIQFTDKNDLLESLKLVVNRDVVNAFHC
FT                 DLPTLAAFQHELVRLFPTTKFWHCKNMVTDITNKDDQIQIVNTEHNRAHRA
FT                 AQENIKQILREYYFPKMAKLTNEIVLNCKVCTTAKYDRHPKKQELGQTPIP
FT                 SYPGEMLHIDIFSTDHKLFLTCVDKFSKFAVVQPLLSRTITDITIPILQLL
FT                 NIFPKIKTIYCDNEASFNSETITSMLKNQFEIDVVNAPPLHSCSNGQVERF
FT                 HSTLLEIARCMKIDKQLNDTTQIIVRAAIEYNKTIHSVTEEKPIDVIHAQH
FT                 TVLRENIKDRINKAQQDQLNRCNPDRQNRVFDVGDKVFIKNNKRLGNKLSP
FT                 LCSEGRVQADLGTSVLIKGRVVHKDNLK"
FT   CDS           4708..5850
FT                 /product="Gypsy-44_DWil-I_3p"
FT                 /translation="SSSLFATSNHKVTIVIVYIPHRLITIILSVLAAAGAR
FT                 ITDYSNANYIPVLDGNVLIWEQRSYLRHSTNLTEFTKIIDDTIKLAELFPL
FT                 TNMRKFIEVDIKHVKNLLSALMIHHRIARSLDFLGTALKVVAGTPDAADLE
FT                 RIKITEAQLIQSNNRQIIINTETQRQINLLTNTVNKIIQSRSGEITDIPHL
FT                 YETLLARNRMLITEIQDLMLTVTLAKSNIINPAIFDQEDSKSIFTEQFTTV
FT                 SIVNLMAVSNIKIFQSDSTIHIIIDYPRIKLLCKKVIIFPVIHGDTILQIH
FT                 DNIVAECDDGVKAVTECVTNNHATFCKLAKHDTCARGLHSGQSAICRTQPS
FT                 HLEPITRVDEGIIIANTRASISVDDGPTLHVNGTSYNV"
XX
SQ   Sequence 6213 BP; 2139 A; 1331 C; 1245 G; 1498 T; 0 other;
     ggcgcccaac cggaattgga ttaccatcta agaatccaca ccctaccaac atgtaagtga        60
     ctgttcggaa aaaataaaaa caaattataa tatataaatt tgaaaccaaa caaatataaa       120
     aacaataata aaaaaaataa taataaaagt ggcagcataa agtgatcttg tgaataattt       180
     gcattagatt tgtaactaat ttgctttgaa tttatttgca ttgaatttaa ttgtgagttt       240
     gaatgtgtgc ggtcatattg ttagattgaa ttcgctaaga cactgtgtta aacaactgcc       300
     aatgagttgg tcctataggg acattaaaaa agaatctgat agcgacgaag atattatagt       360
     acaatctagg cctcaggcac tcgatcaaac agaaatggat ccacaaacgt taaaagttat       420
     aatagagagc gcagtcagca ccgcgcttaa cgcacaagaa caacgcataa gaggcgagat       480
     acacgccgaa ctcgaacatc tgagaaacca agtgaactca tttagaattg aagcgcccca       540
     agtacaggtg tacgaaagcg taacaattga ccccagcatt agatgtgagg ttagactcga       600
     cgctgcgaaa tcggtgccga attttaatgg tgaccatgaa gaatatgtgt cttggagaca       660
     atcagccata gaggcatatc aagcctacaa gggatactat gggagtgaaa cacattacca       720
     ggcagtgatc attttaaaaa ataaagtttg tggtgccgca cgcgcagtgc ttacctcaca       780
     taacactgtg ctaaatttcg atgcaatcat tgctagactt gattgcacat acgccgataa       840
     aacgtctctg cgcgttctta gacatcaatt agaaatggtc agacaaggag acctagaatt       900
     aatgcagtac tatgatgagg ttgagaaaaa actcactctt attacaaata aaattgccat       960
     gacgcatgag gagcaagcag ccgtcattct taatacagaa attaggagcg atgctctgca      1020
     cgccttcatg gcaggcctga ggaggcctat taaggcacta gttataccag cacagcccaa      1080
     agatttgcct tcggctttag cactggctcg cgaggctgag aatagcatag aaaggagcat      1140
     gttcgctgct acgtatgcta aagcaattca agataggagc cacccagggg aaaataacaa      1200
     gcaagggaat cgctcaatgc ccagacaggg aaaacatttt gagaaaaacc cccattttac      1260
     aggaaaacaa gtccaaaaca gaccccaaca gggtgagcag ggaccaacat caaacagtaa      1320
     acaacttcga gcccaagacc aagcacaacc gatggatgtt gatccatcag tttccaaact      1380
     gagacagcag actgcttggg gtaaaacccg cggtagcgcc acttacggcg aatctcaaaa      1440
     gagacagaac gcatcagagc gtatgactgg acagagtcgc cagaatgtta acaacatttc      1500
     tcaaaaagac tcggcccaag accaacaata cgcgcgtata gcagaggccg ccgtcgcaga      1560
     ggctagcgat gagaacgact ccataccgga caatgatttg ctaaattttt tagagaacgc      1620
     tcccaactgc cgttcgtcga gcgacagttg gctggtagaa cactaaaaat tctaatcgac      1680
     actggggcgg caaagaatta tgtgaaaccc gtaaaggagt taagaaacat aacacttgtc      1740
     gacaccccat ttactgtgaa ctccatacat gggtccagta aaattaaaga aaaatgcttc      1800
     atgagaattt tcggaaagaa tgccccgttt ttcattttag atacccttga tacttttgat      1860
     gccataatag gcttcgattt gctaacgcaa gcaggggtaa ccctaaactt acacagcggt      1920
     agtattacat atggcagtac ggcggaagca ctgcaacacc atacttgcga tagcgttaat      1980
     ttcacacgca ttgatgacat aatagttcct gatagcgtaa gagaggaatt taaaaaggta      2040
     atactgaaca ggatcggcgc attttcgacc tctaacgagg cattgccata taacacttca      2100
     gttattgcca caattcacac aatagacaac caagaagtgt actccaagtc ttacccatat      2160
     cctatgggtg tagccgattt tgttaataac gaaatcgctc aattgttaaa agacggcatt      2220
     ataagaccat ctcggtctgc gtacaacagt cctgcatggg ttgttgacaa aaaaggcttg      2280
     gactcaaacg gtaacaaaaa caaacgactc gttattgact ttcgaaagtt aaacgagcga      2340
     accattgccg accggtaccc aatgccaagc attccaatga ttctagcgaa tcttggaaag      2400
     gcaaaatttt tcacgactct ggacttaaaa tctggatacc atcaaatcta tctagctgaa      2460
     aaggatcgcg cgaaaacggc gttctcagta aacggaggga aatacgaatt ctgtcgctta      2520
     ccctttggtt tgaaaaatgc cggaagcata tttcagagag caatcgatga tgttctaagg      2580
     gaacaaatcg ggaaaatatg ctacgtctac gtagatgacg tgttaatatt ttctgaaaat      2640
     gaagccgagc atgtcaaaca cattgacact gtgctccagc tgctctgcaa cgctaacatg      2700
     agagtttcga aagaaaagac aaaatttttt aaagaaagcg tcgaatattt gggttttatc      2760
     gtctctagtg acggaacaaa aactgacccc gaaaaggtca aggcaattca ggagtacccc      2820
     gagccaaaga gcctctatgc actaagatcg tttttgggcc ttgctagtta ttacagggtg      2880
     tttattaagg attttgcatc aatcgcaaga cctttaaccg acatactgaa aggcgaaaat      2940
     ggaaaagtag gcaagcacat gtccaaaaag gtcccaatcg actttgatga attgcaacgt      3000
     cacacctttg accgcttaag aaacattctg gcatccgagg atgtcatact catgtacccg      3060
     aactttcaaa aacctttcga cctcacaacc gacgcttctg ccgacgggat tggagcagtg      3120
     ttgtcccagg gcgggaggcc aataacaatg atatcccgaa tattaaagca aagtgaatca      3180
     ctttacgcca ctaatgaaag ggaattgttg gcaatcgtgt gggctcttgg aaaactacag      3240
     aactacctgt atggaaccag agagttgcac atttttacag atcaccaacc gctcacattt      3300
     tccgtgtcac aaaaaaacac aaatgcgaga attaaaaagt ggatggcttt tattgaagaa      3360
     cgtaacgctc aaattcatta caagccaggg aaagaaaacc tagtggcaga tgccttatca      3420
     aggcaaaatg taaatgccct acaagatgaa attcaatcat gtgctgccac cgtccacagt      3480
     gagctttcct tgacctacac aatcgagaca acagacaagc ctgttaatct ctttagaaac      3540
     caagtaatcc tagaagaggc gcgctacaac ttgcatcgga gactaattct attcggcagc      3600
     aaaactcgcc atgtgataca attcacagac aagaacgatc tccttgaatc cttaaagctt      3660
     gtagtgaacc gtgatgttgt aaatgcattc cattgcgatc ttcctacatt agccgccttt      3720
     caacatgaat tagtgcgact tttccccaca acaaagtttt ggcattgcaa gaacatggtt      3780
     actgatataa ccaacaaaga tgatcagatt cagatagtta ataccgaaca taatcgcgca      3840
     catagagcag cgcaagaaaa tatcaaacaa atactccggg agtattactt cccaaaaatg      3900
     gccaaattaa ccaatgaaat cgtcttaaat tgcaaagtct gcaccacagc taagtacgac      3960
     cgtcacccaa aaaaacaaga acttgggcaa acacctattc cgtcttatcc cggcgaaatg      4020
     ctgcatatcg atatattctc cactgaccac aagctattct tgacctgcgt ggacaagttt      4080
     tccaaatttg ctgttgtaca acccttatta tcccgaacaa taacggatat tactatcccc      4140
     atattgcaat tactcaatat ttttccaaaa ataaagacaa tttattgtga caacgaagca      4200
     tcgtttaatt cagagacgat tacttcgatg ttaaaaaatc aattcgaaat agacgtagta      4260
     aacgcacctc cattgcatag ctgctcgaat ggacaagtgg aacgattcca cagtacattg      4320
     ctagagatag ccagatgcat gaaaattgat aaacaactta atgatacgac acagatcata      4380
     gtaagagcag caatagaata taataaaaca attcattcgg ttacggaaga aaagccaata      4440
     gacgttatcc atgcacaaca cactgttttg cgggaaaata ttaaagacag aataaacaaa      4500
     gcacaacaag atcaactcaa cagatgcaac ccagataggc aaaatagggt atttgacgta      4560
     ggcgacaaag tatttattaa gaacaataaa aggttgggaa acaaattatc cccgttgtgt      4620
     tctgagggac gcgtacaagc agacctggga acttctgtac ttattaaggg gagggtggtc      4680
     cataaggaca atttgaagta attttgatca agttctttat ttgctacatc aaaccacaaa      4740
     gtcactatag tcattgttta cattccccac aggttaatca ccataatact gtcagtccta      4800
     gccgcagcag gggcacgcat taccgactac tccaatgcaa attacattcc cgtgctagac      4860
     ggcaatgttt taatatggga gcaacgcagc tacctaagac attcgacgaa cctgactgaa      4920
     ttcacgaaaa tcatagacga tacgataaaa ctggctgaat tatttccctt gacgaacatg      4980
     cgaaaattta tagaagtaga cataaaacat gttaaaaatc ttttgtccgc gttaatgata      5040
     caccacagga tagcaagaag tctagatttt ttgggcacag cgctaaaggt tgtggcagga      5100
     acgcctgatg cggcagattt ggaaagaatt aaaataacag aagcacagtt aattcaatct      5160
     aacaatagac aaataataat taacacagaa actcaaaggc agattaattt acttacaaat      5220
     actgttaata aaataataca gtccagaagt ggtgaaatta ccgatatccc acacttatac      5280
     gaaactttac tagcaagaaa tagaatgcta attacagaaa ttcaagacct tatgcttact      5340
     gtcacacttg ccaaatctaa tataataaac ccagccattt ttgatcaaga agattcaaaa      5400
     tctattttta ccgaacagtt cacaacagtc tccatagtta atttaatggc tgtgtccaac      5460
     attaaaatat ttcagtccga tagcaccata catataatta tagattaccc tagaattaaa      5520
     cttttatgta agaaggtcat tattttccct gtgatacatg gggacaccat actacagata      5580
     cacgacaaca tagtggcaga atgcgacgac ggagtgaagg cggtcacaga atgcgttacc      5640
     aacaatcacg caacattttg caaactggct aagcatgaca catgcgctcg cggactacat      5700
     tcagggcaat ctgctatatg tcgcacgcag cccagtcacc tggagcccat tacaagggtt      5760
     gacgagggga taattattgc caacacgcgt gcgagtatca gcgtagatga tggccctacg      5820
     ttacacgtca acggaacatc ttataacgtt tgagaaaagc gctacgataa acgggaccat      5880
     gtacctcaac cacaacaagg tcgtaagcaa ggttcctggc atcccagctt cccctttgct      5940
     acatataacg ggacacgatc atgtgttaag tctacctctg ctacagcgaa tgaatgaact      6000
     caacctaaac gccatccagg agttgaatga tgatatgata tccaacggat cgcccaaggt      6060
     ttggttcgcg atcggagtac ttgtaagctt cttgctctgt agcctcgtcg tagctggtta      6120
     ctgcaggtac cagaggaagt cagctgctaa actgcaaaaa ttcgtccaag agtcatgcat      6180
     caccgaggac ggcaatgaac ttagaagggg aga                                   6213
//
ID   Gypsy-44_DWil-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_DWil_;
KW   Gypsy-44_DWil-LTR; Gypsy-44_DWil-I.
XX
NM   Gypsy-44_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-481
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1858-1858 (2012).
XX
RN   [3]
RP   1-481
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 481 BP; 156 A; 111 C; 65 G; 149 T; 0 other;
     agttaacaaa caatctagcg aactgcccct gcactaagtc ttagaagaat ctgtgcagct        60
     gcaacgtcga tgtgacgaat tccacataag cataaatacg ctgacacagc gtctgaccaa       120
     gagctcatag catgaccata cgccttacat atttacttct tatgtattta gctttagatt       180
     catattccca cttatgtatt tagctttaga ttcatattcc aatttatgta cttaggttta       240
     gttctctttt atttccttca atatattcag tttttgtata accctttaac aataaagaag       300
     cataactccg gcacttagcc gaaacataat ttatcatatc taatatattg ctgatccaca       360
     aggacggtga ttcagatacc taatcgtatc tcatcctaat caacataaat caatccataa       420
     gctggatccc accaacggca acccctaaca ggaaccagtg gacatattca acattataac       480
     t                                                                       481
//
ID   Gypsy-44_LMi-I repbase;    DNA;    INV; 6823 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6823
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1806
FT                 /product="Gypsy-44_LMi-I_1p"
FT                 /translation="MADQIGNGNIKGNVNLNNQDNFESDTNNMAEIVNNSM
FT                 GQNVVENEYSDLGDSKQTSEVGSNNVSGVFGTDHVMIQLLQEIKLVRSEIQ
FT                 ENKKAQEENRRELDEKFENFGQKISKTLRSELALDLEQRITSFRNDFQGQF
FT                 DEFVKECKKSLQQEQLTFRTEVKMHCQALSDEVVEVKKQIGSQTNMLKEAM
FT                 LSSAVXNQEVVRAKTLCEENKESVIKVVAGVQEQYSVLESKVQELEQSIQN
FT                 VKVPNQAIDTEVIRKEVDSIINKNGISGGCTNIIVDNMCSTKLFKEFDPHK
FT                 SLHPVDFIKQFKVAFARIHNEAEKIDICVRHMTGGARTWGNRVLDQYTTFA
FT                 DFENAFLNKYWSREKQQSIKETILSMSSYDRSSGSMRDFLQKYWERNGYLD
FT                 RPVSEDDLITLLIKHLPRRIRRQLAMKTYDNFDELLRVVDRLEEIDNEESQ
FT                 ARPGQNANPIQNFHLNESPQSNSNWYSQSNQQNDRPNRNWHNNQRRNWRSN
FT                 NEGHHEDANRRDEDSNRREHDRSQWRNNNDRHRQRSRSPEN"
FT   CDS           join(2136..3089,3093..3623,3577..5214)
FT                 /product="Gypsy-44_LMi-I_2p"
FT                 /translation="MGQALIKCKIANKYFDVVALVLDSLAVDWIFGNDWLA
FT                 EKRCKIDYAKGCLSICHHNEEIEVNFVGLLQEKENASSGLKIKVIRNEVAE
FT                 DFDGDVTVPNCIAVDENEEDRSIMFKIEEKINDLDHLPQCYKEELLEVLRI
FT                 HAKVFSSQPGLMKGCKCYIKVRPHEPVKCKPYSVPLAKREAVSKEIKRMLD
FT                 NDIIERSDSEYCNPIHPVIKRDGSVRLVLDARAINRVILPQRDQPESIEEI
FT                 LQKFAGTRYLSSLDMTSSYWQLELDKDSRKYTAFLHNGRCYHFKRMPFGLN
FT                 ISSAAFVRALDEILEKTIAGRHCLCRHFNCLTIVGRPYGNTGPSFNTFESG
FT                 GVTLNLKKSEFAKEKVQFLGHVISSAGIEPDPRKLEAVRNFPEPMCKKQLQ
FT                 SFLGFCGYHRRYLKGHCLSSPALLSLMKKNAVWNWGPEQREAFLKIKKQLL
FT                 EAPLLHPPDLKEPFYLGTDASEYGIGVHLYQIIMKMGRNNIVLLLLQVVYK
FT                 WAGTTSYCCFCKSCIDIMGKEIHCDRTRSACDCWGFERFRYFLLGRHTIVR
FT                 TDHKALSFLLCCKLLHNRLTRWILALQEYSFEIQYIPGEENVVPDTLSRLT
FT                 GDLTGVRTESPRVKEIKINFIRGVEGEATIRRFLRNIKNEQDNDDILKMIK
FT                 SMYTNETQKKIRDYYLLHDDVLYRRTDVNSHSWKLCIPQHMVDVLIRYIHL
FT                 SFAHFGPKKCLQQLQRQVIFANMSRRVRQIIKECDLCQRTKVSTTQHKGLM
FT                 HNILPKEVGDVIGIDLYGPLPRSQGNFTQILVVVELFSKYIRFFPLRRANS
FT                 KIIVKKLKEDYFQNTIRPKSILSDNGPQFRSKVWNTFIEEQQIRHITTSTY
FT                 RPASNGAAERTMRELGRLFRAYCGHKHKSWITKLSNFENVMNSLVHSSTGL
FT                 PPCTVLFGKEPENIFEEVIQFPLQDEMTDGERQKIALRKMEEMAKARKERH
FT                 DRLVKPVVYKIGDYVLIRSHFKSSAAKDEIKKFLHYYLGPFKISKIVHPNS
FT                 VELQKLNGEKYFGLHHVENIKLYHRRMEDSDNKTD"
XX
SQ   Sequence 6823 BP; 2216 A; 1091 C; 1500 G; 2010 T; 6 other;
     aatggcgaca cggtgacaag gacgtcgatt ccttcaacaa tcttcggatc cggaggacga        60
     tcgacagcaa caacacatgg tgagtgttaa atattcagcg gcgcctcgaa tttcaatcaa       120
     cgttggacag gattaacaca gtgaacagtt atttcatcat tcttaaagtg tgtgtgatag       180
     aaacttcatt taataatggc ggatcaaata ggaaatggta acataaaggg caatgtgaac       240
     ttaaataatc aggacaattt tgaaagtgat actaacaata tggcagaaat agttaataat       300
     agtatgggac aaaatgtagt agaaaatgaa tattcagatt tgggtgatag taagcaaacg       360
     agtgaagtag gcagtaacaa tgtaagtgga gtattcggaa cagaccatgt aatgattcag       420
     cttttgcaag aaataaaatt agttcgttca gagatacaag aaaataagaa ggctcaagaa       480
     gaaaatagga gggaacttga cgaaaaattt gaaaattttg gtcaaaaaat tagtaaaaca       540
     ttaagatcag aattggcatt agacttagag caaagaatca caagttttcg taacgatttt       600
     caaggtcaat ttgacgagtt tgtaaaagag tgtaaaaaat cgttacagca ggaacaatta       660
     acttttagaa cagaggtcaa gatgcattgt caggcactta gtgatgaagt agttgaagtt       720
     aaaaaacaaa ttggatctca aacaaatatg cttaaagaag ctatgttaag tagtgcagtg       780
     amaaatcagg aggtagttcg tgcaaaaacc ttatgtgaag aaaacaaaga atcagtcatc       840
     aaagttgtag cgggagtaca ggaacaatat tcagtgttag aatctaaagt gcaggagctc       900
     gaacagtcta ttcaaaatgt taaagttcct aatcaggcga tagatacaga ggtaatcaga       960
     aaggaagtag actctattat taataaaaat ggcatttctg gaggttgcac aaatatcatt      1020
     gttgacaata tgtgtagtac gaaattgttt aaagaatttg atccccacaa gtcattgcat      1080
     ccagtggact ttattaaaca atttaaagta gcgtttgcaa ggattcacaa tgaagctgaa      1140
     aaaatagaca tttgtgttcg acatatgaca ggaggtgcga gaacatgggg aaaccgtgtg      1200
     ctcgaccaat atactacatt tgctgatttt gaaaatgcct ttctcaataa gtattggtca      1260
     cgtgagaaac agcagagtat taaagagacg attctttcga tgagcagcta tgatcggagc      1320
     agtgggtcaa tgcgcgactt tcttcaaaag tactgggaaa gaaacggtta cttagataga      1380
     cccgttagtg aagacgactt gattaccctc ttgataaagc atttgccgcg gagaattagg      1440
     agacagttgg caatgaaaac ctatgataat tttgatgaat tattgcgagt ggtcgaccga      1500
     cttgaagaaa ttgataatga ggaatcacag gcgagaccag gccagaatgc aaatcctatt      1560
     caaaattttc acttaaatga atcgccacag tctaacagta attggtattc gcaaagtaat      1620
     caacaaaatg ataggcctaa tcgaaactgg cataataatc agagaaggaa ttggaggtca      1680
     aacaatgagg gacaccacga ggacgcgaac aggagagacg aagattcgaa taggagagaa      1740
     catgatcgtt cgcagtggcg taataataat gacagacacc gtcaacgctc gcgatctccg      1800
     gaaaactaag aagagtttcg gatgggaccc gctccgaaac taatgaactt aataatgggt      1860
     cagagatttg agtacaactc attaaacacg taaaggatga aattaaagct gaactgttgc      1920
     gtgaagatgt gcaagaagtg ggagagattt tcgatccagt aattgagtta tgtgttaatg      1980
     gtagaaaaat tacagctatt gtggattctg gaagtgatac tacagctatt tcaaagaaat      2040
     tgtatgagca gctcaaagag gtagaagaaa ttcctgtttt tccagttaat agtgtacaca      2100
     ttattaccgc aactggacag agaagtcgtg ctgtaatggg acaagcactt ataaaatgta      2160
     aaattgctaa caaatatttt gatgtggtag cattagttct tgattcactg gccgtagatt      2220
     ggatctttgg taatgattgg cttgccgaga agagatgtaa gattgactat gctaaaggat      2280
     gtttaagtat ttgtcatcat aacgaagaaa ttgaggtgaa ttttgtcgga ctactacagg      2340
     aaaaggaaaa tgcgtcatca ggattgaaga ttaaagttat tcgcaatgaa gtagcggagg      2400
     attttgacgg agatgtaact gtaccgaatt gtatagctgt tgatgaaaac gaagaagatc      2460
     gtagcattat gtttaaaatt gaagaaaaaa ttaatgacct agatcatttg ccgcaatgct      2520
     acaaggaaga attgcttgaa gttttgcgga tacatgccaa agtattttcc agtcaacccg      2580
     gattgatgaa aggatgcaaa tgttatatta aagttcgacc gcatgagcct gttaaatgta      2640
     aaccttattc ggtgccatta gcaaaaaggg aagctgtgag taaagaaatc aagcgaatgt      2700
     tggacaatga cattattgag aggtcagaca gcgagtactg taatccgata cacccagtaa      2760
     ttaagaggga cgggtcagtc cgcttggttt tagatgcgag ggcaattaat cgagttatct      2820
     tgccgcagag agatcagcct gaaagtattg aagaaattct gcagaagttt gctggtactc      2880
     gatatcttag cagcttagat atgacaagta gctattggca attggaattg gataaagata      2940
     gtagaaagta cacagccttt ttgcataatg gacgatgcta tcattttaaa cggatgcctt      3000
     ttggattgaa catttcctca gctgcgtttg ttagagcttt agatgaaatt cttgagaaaa      3060
     ctattgcagg acgtcattgt ctatgtagat gacatttcaa ttgcctcacc atcgtgggaa      3120
     gaccatatgg aaacactgga ccaagtttta atacgtttga atcaggagga gttacactta      3180
     atctcaaaaa atctgaattt gcgaaagaaa aggtacaatt tttaggacat gtcatctcat      3240
     cagctgggat agaacctgat ccgaggaaac tggaagcagt cagaaacttt cctgaaccta      3300
     tgtgtaagaa acaacttcaa tcattccttg gtttctgtgg atatcatcgt cggtacttaa      3360
     aaggacactg tttgtcatca cctgcacttt tgtcattaat gaagaaaaat gccgtttgga      3420
     attggggacc tgagcaaagg gaagcgtttc tcaaaataaa gaaacaactt ttggaagctc      3480
     cgctactaca tccgccagac cttaaggaac cgttctacct tggcacggat gcaagtgaat      3540
     atggaattgg agtgcatttg taccaaatta taatgaaaat gggcaggaac aacatcgtac      3600
     tgttgctttt gcaagtcgtg tattgacatc atgggaaagg aaatacactg tgacagaacg      3660
     cgaagcgctt gcgattgttg gggatttgag cgcttccgtt acttcctctt aggacgtcat      3720
     actattgtga gaactgacca taaggcttta tcttttctac tctgttgtaa gttgcttcac      3780
     aaccgcttaa ctagatggat tctggccctc caggaatata gttttgagat acagtacatt      3840
     cccggtgaag aaaacgtcgt acctgacact ttatcgcgat tgacgggaga tctgacaggt      3900
     gtgcgaacag aatcaccacg tgtgaaagaa ataaaaatta acttcatccg aggagtagaa      3960
     ggagaagcta ctatccgccg ttttctacgt aacatcaaga atgaacaaga caatgatgat      4020
     attttgaaga tgatcaaatc aatgtataca aatgagacgc agaaaaaaat tagagattac      4080
     tatttgcttc atgatgacgt tctctaccgm agaacggatg ttaattcaca ttcttggaaa      4140
     ctttgtatcc cacaacacat ggtcgatgtt ttaatacgat acattcatct gagtttcgca      4200
     cattttggtc caaagaaatg tttacagcaa ctacagagac aagtaatttt tgccaatatg      4260
     tctaggcgag tgcgccaaat tattaaggaa tgtgatttat gtcagcgtac caaagtgtca      4320
     acaacgcaac ataaaggact tatgcataac attttgccaa aagaagtagg tgatgtcatt      4380
     ggaattgacc tgtacgggcc tcttccacga tcgcagggaa attttactca aattctcgtg      4440
     gttgtggagc tgttttcaaa atatattcgt ttctttccgt taagaagagc caatagcaaa      4500
     ataattgtga aaaaactaaa ggaagactac tttcagaata cgattcgtcc taaaagcatt      4560
     ctctctgata acggacctca atttcgctcc aaagtttgga atacgttcat tgaagaacaa      4620
     caaattcgtc acattactac atccacatac aggcctgctt ctaatggtgc tgcagaacgt      4680
     acgatgcgag agcttggtcg tttatttaga gcgtattgtg gccacaaaca taagagctgg      4740
     ataacaaaat tgtctaactt tgaaaatgtt atgaatagcc tggtacacag tagtactggt      4800
     ctacctcctt gcactgtttt gttcggaaag gaaccagaaa acatatttga agaggttatt      4860
     cagtttccat tgcaagatga aatgacagat ggagaaagac agaaaatcgc gttacgaaag      4920
     atggaggaaa tggctaaagc acgaaaggaa agacacgacc gattagtaaa acctgttgtc      4980
     tacaaaattg gtgattatgt attaatacgt tcacatttca agtcatctgc ggccaaggac      5040
     gaaatcaaga agtttttaca ttactatctg ggaccgttta agattagtaa gattgtgcat      5100
     ccaaattcag ttgaattgca aaagcttaat ggcgaaaaat attttggact acatcatgta      5160
     gagaatatta aattgtacca tcgtaggatg gaagacagtg ataataaaac agattagggg      5220
     aatgattatt tgttgattaa tttggactgg ttgagtattt ttcccagtga tgtaggttaa      5280
     aggacaggtt gagttcgctc ccaatgatac ttagtttttg ttttgtactg tttctttgcg      5340
     tgtgaaatat gtatagatga atatgaagat gtgaatcact gatagaacat atgatcacgt      5400
     gtgacgagac cgcgagtgtg acatgatgta gcggcgcgtc ctttattgtg aaacacggta      5460
     ctgtgcgctt tgtttaattc tgttacaagg agatgcggca gtaccgacgt ccgtcactaa      5520
     gcggcgcagt tgtcgtctgt cagctgctgc agttctgctt ttctacacaa cgcagcgcag      5580
     aggtcgccgg agcgcaattc agctgtcatg ggctaaagtg tggcactcac cgcggggagg      5640
     cgcgcaagct ggagttgcta agcgacgccg ccttcgcgtc actgctgacg tcmcgtgttg      5700
     tttataaaca aagccatgtg cgacggtggt gttataattt cgtgcatgcg tgtgagttag      5760
     gaaaatatta aagcagagta ctcatgtgag cagtgattaa tatttatatt tcaattttcg      5820
     tgtgaagtac ctttgtgtgg taggaccata aagcagagta ctcgtgtgag ttatgattca      5880
     tagtgtaacg agaagtgata gtgcgaagta ttcctttttc agaatttgga tgttctggtc      5940
     gaaakaaggt atttatgtaa tcatattatt gtatgctgaa tgccactacg acaaaaaagt      6000
     gcccactctt ttttctcttt cttacctcta tatttatttt aaattttact taacattgat      6060
     gagctttatc tattttcgta ggtaattttg tagtatcagt tatcaatctg agcctcttat      6120
     tacaaggata ccactctgtg tttamtgagt agtttagttt attttttact gtgtttgttt      6180
     gatgtatcat cctctttcta ccaattttac gtttttgatg acctatatgc acagacatta      6240
     ctagcaattt tctgtaggtg gatttctaat taagtaacca ttaattactg tttgtgttga      6300
     tgacttgaaa cctaatggtt tattgttcct tctatgtgaa agggctacat gactgtaaca      6360
     tgatgcaaat gttttgatgt tggatgtata tttgggatca attttggata attgcacatg      6420
     ttctgctacg tgcaaattgg cactttaaag ggatctttaa aattttatgt ccgttctgtc      6480
     tcaaatgtct gagggatgat tggtatatat tttgcacaat ttgcactctc tttgtagcta      6540
     ggtgcaattg ctatgaaaaa tgttgttgga tgaaagacaa ctgtaaccta tgaaagttta      6600
     tttcagaaat ttaattttct ctatgatctg atttaacagt atatagtcca atgattaata      6660
     ttagtatgta tgtgtacttt tgtatgtaat atttttgata ctgttttcat tatttttctt      6720
     atcttcctct actctmtggg ccctattaca tctacaattt cacactgaaa cttaatgtcg      6780
     ccataaattt tcaggtgaaa tttattttta tagtccgggg ata                        6823
//
ID   Gypsy-44_LMi-LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-485
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 485 BP; 117 A; 86 C; 131 G; 151 T; 0 other;
     tgtgaggata cagggtttta gcttagtaac ctctttggta cgttttggtc gaacgatagt        60
     tatcgttggc gtgcagcgat agctgctggg cgacaatgct taggttggaa cgttttttgt       120
     ttgttggcgg tgtgcggcag tctcccgccg accgcagagc gaggcagtag catgtcgaca       180
     gtgcgtccgt aacccgcgtt tagcggtggc taaagttttg cccatcagtc gtatcgcata       240
     tgagtttcgg ttgtaattgc gtattgaaat gtttcagtgt ggacttgtag acattatcgt       300
     agtggcacgc ggttatttaa tcagtgtatt taaagaaagg ttttaacatt tgtcgttcca       360
     taataaagga agttaacaaa gtttattgtt atggatcaac ccagtaattg tccgcatccc       420
     atacagtcat accattggaa caatgattaa gcggaggatt aagtggacgc agctgtgacg       480
     ttata                                                                   485
//
ID   Gypsy-44_MoPha-I repbase;    DNA;    INV; 5278 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5278
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1121-1121 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           727..5154
FT                 /product="Gypsy-44_MoPha-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSEMDRAKLTKLGTEALKKEAVRAGLADQIKVPVDR
FT                 AELIEMILARKESDGQLEVIEGSVNSPFDAAAEFGESASGTSRADNVPLSQ
FT                 EAKQILAAVTADFLAKQAEMERRQQQFMERQQQQFERLAQLVAGQRIVLPS
FT                 PRETEGMPAVASNHSTSIVQFPVERQETPGASATSASAVKVSTLVPQIPEF
FT                 GGTEKENVKVWVRRVNSVARIHAASDGLVLLAASSRLTGFAKRWYHRQEGA
FT                 ALESWAELQRLLTKAFDSRMSMYSTMQQLEARTWRTNKESFMQYAMDKLDL
FT                 MSNLDLTVQDTVSIIAGGIPVDALRYTALGIAADTVEDFLEKMRPLTRGVT
FT                 HQDRKPAPKGNAKPRDSDGCRNCGRRGHTHMECRNEAVCFYCKVKGHRQYE
FT                 CPAKKKKADTTPARGLQSRSTAAAHVAETSAGKAAPADPPSADVVAAIQEG
FT                 GNGPEKILEITGPFVEVLKVEDNACKLSALIDTGSPVSLINEKVYKLYFRI
FT                 VDGLKPSNRSLTNLSAKPLDLLGSIKTKITLELCPHKQFEVELQVIRDKLF
FT                 VSDLVLGRDFLNKEDLTLIYRPFACEKQRTVNLFASLPLSINDSTEQQHVS
FT                 TMVQEAVVDFDASVKTRLEDVISEAMTREIETVTDEYAVRINIRDPSIFAF
FT                 APRRLAFAERIELRKITDDLLERGIIQPSNSPYCSRVVPVRKRSGEMRLCV
FT                 DLRPLNSRINKQKYPFPIIEDFLTRLSGKKIFTLLDLKDSFHQIKVSPEHT
FT                 KYFAFATPDGQFEYTCLPFGFCESPAEFQKRLISVLNDFIRADRIMVYIDD
FT                 VLLPSKTIEENLETLAEILVQLRKYRFEVNFAKCQFLRKKVEFLGYIISNG
FT                 EVTLSPRHTEAIKQYKMPKTEHEVQRFLGLTNYFRKFIRDYAHKARPLQNL
FT                 LKKETKFKIDDACVESFNALRDALVSTPVLRLYDPAAETELHTDASSLGLG
FT                 AILMQKCPDRNWAPVAYFSRTTNQAEMRYHSFELEMLAVVRAVERFHVYLY
FT                 GLRFTVVTDCSAIVHAVNKANINPRIARWTLALQSYDFKLVHRSGKAMPHV
FT                 DALSRCVAIIDDLPLETILVYKQLADPKIKEISKVLEDSPMENFSLVDGLV
FT                 YRIIDNQLKFYVPETMTVSVMRVYHDEMAHCGLEKTLRGVQRAYWFPSMNR
FT                 KIREYIENCITCIVANSSLNRLERDVQVPADPGAVMDQIHVDHFGPLQATG
FT                 DGYRHVLVVVEAVTRFTWLFPEKTTSSREAISDLDKIFHLFGRPREMVTDR
FT                 GTAFTSDEFASYVRELQIAHRKVAVASPWANGLVERVNRFLKTSLSKLIAS
FT                 PENWKRELPRAQYVVNNTYHSAIRASPAQLMLGFDQRNHSDTHLSRFVKTL
FT                 VEGDAELEADRTRKRQIAADATAALQTYNKQYVDQRSRKPSVYKEGDFVVI
FT                 RDMRNKPGQSAKLKPHYKGPYIVDKALGFNRYVIKDVPGFNHAARPLNTVL
FT                 SSDKLKKWIQT"
XX
SQ   Sequence 5278 BP; 1450 A; 1301 C; 1428 G; 1099 T; 0 other;
     actcagaagt gggatacaga tccgctctcg ctcctcgtct cgagaacatc cagactccga        60
     actctctcgg ctcgtgtgtt ggaaaagtgc tccgaactct ctcgactcgt gtttcggaaa       120
     acgtgctccg aactctctcg gctcgtgtgt tggagaagtg ctccatctcg actcgtgtct       180
     cgaaaagtgc tccgaactct ctcgactcgt gtctcgaaaa cgcgctacga acactctcga       240
     ctcacggttg gaaagtgtgc tccgatcgct cccgtgcctt gtggaacggt gcaaggagaa       300
     gctacgtgct ccgtctcggg ccccgctgga ggaaacagga gaatctcgtc tcgtacctcg       360
     tccggaagaa actccggagc ctcgtctcgt gtggaagacc agcggaccgg tcggtgctcc       420
     tcgtctcgac tcaccgccgc cggcagccgg gcgcggatca cacctgaaca gaaatcaacg       480
     acaggttgga aaagtctcga attgttagtc gcgtcgcggt caagtcatta attgttcact       540
     cgtaatcgcg cgtcccgtag ggggaacgcg ttaaattctc gaactcgaac tcgcgtgctc       600
     cgagacgagc catagtgccg gtcggtaccg gagccgacgg gtggacggcc attaagtgcc       660
     gtcggcagcg tgtcgcgcat cgcgaaacac gcgctccgat ttctcgacgc gaatttcccg       720
     gagaagatgc cttccgaaat ggatcgcgcg aagttaacga aactcggtac ggaagccctc       780
     aaaaaagagg cagtgcgcgc gggtctggcc gaccagataa aagtgccggt ggaccgcgcc       840
     gaattgatcg agatgattct cgcgcggaaa gaatccgacg gccaactcga ggtaatcgaa       900
     ggatccgtga actcgccgtt cgacgccgcg gctgaattcg gcgagtccgc gagcggaacc       960
     tctcgagcag acaacgtgcc cctctcgcag gaagcgaagc aaatcctggc cgcggtcacg      1020
     gcggacttcc tagcgaaaca agctgaaatg gaacgaaggc agcagcagtt tatggagcgg      1080
     caacagcaac aatttgagcg tttagctcag ctcgtggcgg gacagcgaat agtgctgccc      1140
     agcccaaggg aaaccgaggg gatgcccgcg gtagcctcga accactcgac ctcgatagta      1200
     caattcccgg tggagcggca ggagacgccc ggagcgtcgg cgacgtcggc gtcggccgtt      1260
     aaggtgtcca cgctggtgcc gcagataccg gagttcggcg gcaccgagaa ggaaaatgtg      1320
     aaggtgtggg tgcgacgagt gaacagtgtc gcgagaatcc acgccgcatc ggatggcctg      1380
     gtcctgcttg cggcctccag ccggttgaca ggcttcgcga agcggtggta tcaccggcaa      1440
     gaaggcgcag ccctagagtc gtgggcggaa ctccaacgac tattgacaaa ggcgttcgac      1500
     tcgaggatgt ctatgtacag cacgatgcag caactcgagg cgcgtacttg gaggacaaat      1560
     aaggagtcct tcatgcagta cgcgatggat aaactggatc tgatgagcaa tctagacctg      1620
     acggtacagg ataccgtcag cataatagca ggtggcatac cagtggacgc tctccgctac      1680
     acggcattgg gtatagccgc agacacagtg gaagacttcc tggagaaaat gcggccattg      1740
     acaagaggcg taacccacca ggacagaaaa ccagctccga aggggaacgc taaacctaga      1800
     gactcggacg gatgccgaaa ttgcgggaga agagggcata cgcacatgga atgccggaac      1860
     gaggccgtgt gcttttactg caaggtcaag gggcatcggc agtacgagtg cccagccaag      1920
     aagaagaagg cggacacgac accggctcga ggactgcaaa gtcgatcgac ggcggcagcc      1980
     cacgtggcag aaacctcggc agggaaggca gcaccagccg accctccatc ggcggacgtc      2040
     gtagcggcga ttcaggaagg aggaaacggc cccgagaaga tcctcgaaat caccggcccc      2100
     ttcgtggaag ttctgaaagt agaagacaac gcgtgtaagt tgtccgcgct cattgacacg      2160
     ggaagccccg tctcgctaat aaacgagaaa gtttataaat tgtattttag aattgtagac      2220
     ggattgaaac catcgaatag gtccctgaca aacctgagcg cgaaaccgtt agatttgctc      2280
     ggtagcataa aaacaaaaat aaccttagag ttatgcccgc acaagcaatt cgaggtcgag      2340
     ctccaagtaa tccgagataa gttgtttgtc agcgacttag tcctgggccg cgatttcctc      2400
     aacaaagagg atcttacatt gatatatcga ccgttcgcgt gtgaaaaaca acgaacggtt      2460
     aatttgtttg cgtcgctccc gctgagcata aacgacagca cggaacaaca gcatgtctcg      2520
     acgatggtac aggaggctgt tgttgatttc gacgcgagtg taaagacacg cttggaagat      2580
     gtgatcagcg aagcgatgac ccgcgaaata gaaacagtaa ccgacgaata cgctgtgagg      2640
     ataaacattc gcgatccctc aatattcgcg ttcgcgccgc gtcgcttggc ttttgcggag      2700
     agaatagaat tgcggaaaat cacggatgat ctcctcgaga gaggtattat ccagcctagc      2760
     aattccccgt actgttctcg agtggtcccc gtcaggaaga ggagtggaga gatgaggctc      2820
     tgcgtggacc tcagaccgct aaatagtcga attaacaaac agaaatatcc ttttccgatc      2880
     atcgaggatt tcttgactcg tttaagcggc aaaaagatat tcacgttgct agacctcaaa      2940
     gacagtttcc accaaatcaa agtcagcccc gagcacacga aatatttcgc gtttgcgacc      3000
     ccggacggtc agtttgaata tacttgcctg cctttcggat tttgcgaatc ccccgcggag      3060
     tttcaaaagc gactgataag cgtactgaac gacttcatcc gagctgatag aattatggtg      3120
     tacatcgatg atgtactcct accgtcgaaa acgattgagg agaacttgga gaccctcgcg      3180
     gaaattctcg tccaattaag aaaatatcga ttcgaagtaa atttcgctaa gtgccaattt      3240
     ctaagaaaga aggtagagtt tctcggttat ataatctcga atggggaggt gaccctcagt      3300
     ccaaggcaca cggaagcgat taagcaatat aaaatgccaa aaaccgaaca cgaggtgcag      3360
     cggtttctcg gtctaacaaa ttattttcgg aaatttatta gagattacgc ccataaggct      3420
     agaccgctgc agaacttgct taaaaaagag acaaaattta aaatagatga cgcgtgcgtg      3480
     gaatcattta acgcgttgag agacgcactc gtctcgaccc cggtattacg attatacgat      3540
     ccggcagccg aaaccgagct ccacacggac gctagcagtc tggggctggg agcaattctc      3600
     atgcagaaat gcccggacag aaattgggct ccagtagcat actttagtcg gacgacaaat      3660
     caggctgaga tgcgatacca tagttttgag ctcgagatgt tggcggtcgt acgtgctgtg      3720
     gagcgctttc acgtatacct gtacggattg agattcacgg tcgtaacgga ctgtagcgcg      3780
     atagttcacg cggtgaataa agctaatatt aacccgagaa tagcccgctg gacattggcg      3840
     ttgcagagct acgattttaa gctggttcac cgatccggca aggcaatgcc tcacgtagac      3900
     gcgttaagta gatgcgtagc aataatcgac gatttgcccc tcgaaaccat actggtgtac      3960
     aagcagctcg ccgatcctaa aataaaagaa attagtaaag tgttagaaga ttccccgatg      4020
     gaaaacttct cactagtaga tggattagtt taccggataa tagataatca attaaaattt      4080
     tacgtaccag aaacaatgac agtcagcgtg atgcgagtat atcacgacga aatggcgcat      4140
     tgcggtctcg agaaaactct tcgcggcgtt cagcgagcgt actggttccc gtccatgaat      4200
     agaaaaattc gcgaatatat agagaattgt atcacgtgca tcgtggcaaa tagctcgtta      4260
     aacagactgg aaagagacgt gcaggtaccc gccgaccctg gcgctgtgat ggatcagatt      4320
     cacgtggacc atttcggccc gttgcaggcc acgggcgacg gttacaggca cgtccttgtg      4380
     gtagttgagg cggtgacgcg gtttacctgg cttttcccgg agaaaaccac cagctcgaga      4440
     gaggcaatca gtgacctcga taagattttt catctgtttg gtcgacctcg ggaaatggtc      4500
     acggatagag gcactgcatt cacctcggac gagttcgctt cttacgtgag ggaattgcag      4560
     atagcacatc ggaaagtcgc cgttgcgtca ccgtgggcca atggattggt agaacgagtt      4620
     aatagattcc tgaaaacatc attgtcaaaa ctgattgcat ctcccgagaa ctggaaaagg      4680
     gagttaccgc gcgcacaata tgtagttaat aatacgtacc attcggctat cagagcctca      4740
     ccggctcaat tgatgctcgg attcgatcag cgaaatcatt ccgatactca cctgtcacga      4800
     ttcgtaaaaa cgctggtcga aggcgatgca gaattggaag cggaccgtac tcgaaagcga      4860
     cagatagcag cagacgctac ggcggctctg caaacataca acaagcaata cgtcgatcaa      4920
     agatctcgca aacccagcgt atataaggaa ggcgatttcg tcgtaatacg ggacatgcga      4980
     aataaacccg gtcaaagcgc gaaactcaag ccccattata aagggcctta catagttgat      5040
     aaggctctcg gtttcaaccg gtatgtaatt aaagacgtcc ccggcttcaa tcacgcggca      5100
     cggccgctca acactgttct gtcctcggac aaattgaaaa aatggataca aacttaagaa      5160
     tagattaatt agcataagaa gcgatacctg taattgtaat tagtcatgta cgaaattaaa      5220
     tgtgataata gataagcgcg cagcttcgag gcgaagctag atatcagaat ggccgagc        5278
//
ID   Gypsy-44_MoPha-LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-452
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1208-1208 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 452 BP; 137 A; 96 C; 103 G; 116 T; 0 other;
     tgtaagactg aaagttaatg tcactagttc ctactcaccc agtatatgta agagaagaat        60
     aaatgtcact agtctatact cacccagtat atgtaagatg gcggcgtgga gtaggtggcg       120
     tgcgaagcca aagcggaggt agatggcgtt agaagtatct tccggctgtc atctcccggc       180
     tccgaggaag atgcggatcc ggagcaagtc agtcggagtc tggaacctga aaagaacact       240
     tactttagac ttacctctcg tgcctatccg gtgatattcg ctaaggcgat ctagtgtaga       300
     actctagaaa atatacttac cttgttacta aagaaaccag ttgatttctc gaacccggcc       360
     tagatcctag agaaaagtcc atcctcgatc ttcctggtga aagtaaccac gttccagtaa       420
     ttaaagaaaa agaatttttg tcaagactta ca                                     452
//
ID   Gypsy-44_MSe-I repbase;    DNA;    INV; 4604 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4604
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 921-921 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           294..1877
FT                 /product="Gypsy-44_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase
FT                 (partial)."
FT                 /translation="MKVSSLLKGRAKIWADEWLVTTSTWNELRQIILTTFE
FT                 PEHRYSRDVLMFREHIYDSSKDLSEFLSKAWMLWKRVTKDKLDNADAVEAV
FT                 IGTISDQRLRIELTNARATSVPELISVASSIRPKRVYPSTSYNGNQPPNKK
FT                 PRLDNKPIPFCSYCRRAGHTIDICRNKNRENFNYKDPYTSDRFRANAPLDS
FT                 VCTFCSRPGHTFQVCHKRLKHISSNAPSTDLVSKQVNNIANSPVTCMYIQI
FT                 GNFQFGATFDSGAECCVMRETIAKKVPGRRYDVVTYLRGIGTFPVISVNSI
FT                 DCVCLIDGIHVELQFVILPDNELSTDILIGINLLKRTGLSVLVNRSGAKLT
FT                 YQSQIMHLECHNPLFDNIDHDLDDNGQIKQLMRMLDKYAHLFIRGYAKSRV
FT                 NTGKLQIRLKNPNKYVERRPYRLSPLERATVRSIVQELLDNKIIRESRSPF
FT                 SSPIILVKKKNGTDRLCVDYRELNSNTIRDHYPLPLIGDQINNLAGGKFFN
FT                 TFDMASGFHQILISECSIEKRHSLRQTASMNI"
FT   CDS           1838..4087
FT                 /product="Gypsy-44_MSe-I_2p"
FT                 /note="reverse transcriptase (partial),
FT                 ribonuclease H, and integrase."
FT                 /translation="KTAFVTPDGLYEYLTMPFGLCNAPAVYQRCINRALGP
FT                 LLNAGSANTNDSDPNDSVAQVYVDDVISKSRNFADGLIFIERILIALEKAG
FT                 FSINIDKCLFFKKTVEYLGNIIEDGKVRPSPRKIDALVKSPIPINIKQVRQ
FT                 FNGLASYFRRFIPNFAHIMIPLYELTKNNSKWQWTYKHEEARNKIIQYLTS
FT                 SPVLMIFSEKFPIELFTDASSLGLGGILVQVVNDRPHVVSYFSMRTTEAES
FT                 RYHSYELETLAVVRSIKHFRHFLYGRHFKVVTDCNALKASKNKQELLPRVY
FT                 RWWAFLQNFDFDIEYRKGNRMQHADFFSRNIETFRVNIMTRDLQWLKVEQR
FT                 RDNLLRSKIESILKGESLDGFLVEDDLLKRIRQDGLLGNQKLVVVPKTFQW
FT                 SLINTFHSSLKHPGWDKTLAKIRETYWFDNMSTVVRQFVDNCIVCKTSKNT
FT                 SGAIQAQLHPILKPTVPFEMIHMDMTGKLGTSTDREYVIVTVDAYTKYVLL
FT                 HHANDKGQHSTLGALKNAIHLFGTPKLVIVDGGREFLGVFKDYCERFGIEI
FT                 HSIAPGVSRANGQVERIMGTLKNALTMIKNYETVDWHTALDSLQLSLNCTM
FT                 HATTGVAPLTLLTKRQHCVPPELLNLVQLDNMTIDFEVLEQHVKRRITEAA
FT                 IKEKARFDLKKAKIQRFQRGDFVLVKNNPRNQTSLDLKFSAPYEIHKILEN
FT                 DRYLIKPVVGRGRPRKVAHDQLRRAPQPGEQATVSPEREHPVVSHNDDQQ"
XX
SQ   Sequence 4604 BP; 1498 A; 957 C; 905 G; 1244 T; 0 other;
     tcagaagtgg gatcgcacac gcgatccctt ccagccgaag ccggacatcc agaacaacaa        60
     ccgggtgcag atttttctgc tcccgagtct gtgcccaaag aattcttcat ggaagtaatt       120
     aaaatgatgc aatctatgag ccaacgcttt tcaaccccgt ttcacgaaaa acaaagataa       180
     ccgacatttt tctaccgtcg tacgatccag atggcaacgt tggtgtacgt gaatggtgtg       240
     accacatatc tactgctgtc gcactatatc agctgagcga ttacgacgta agaatgaagg       300
     tatctagcct actaaaaggt agggcaaaaa tttgggcaga cgaatggctt gttacgacgt       360
     ctacatggaa cgaattacgt caaattatcc tgacaacatt tgagcctgaa catcgctatt       420
     caagagatgt gctcatgttt agagaacaca tttatgattc gtcgaaagac ctatctgaat       480
     ttttgtcaaa agcatggatg ctatggaaac gagttacaaa agataaactc gataacgcag       540
     atgcagtaga ggcagttatc ggcacaatta gtgatcaacg cctccgtatt gagttaacga       600
     atgcaagagc cacatcagtt ccagaactta tatctgtggc ttcttctatt cgtcctaaac       660
     gagtatatcc atcaacatct tataatggca atcagccacc aaacaagaaa cctcgcttag       720
     ataacaaacc gattcctttc tgtagttatt gcaggagggc tggtcatact attgatatct       780
     gccgcaacaa aaatcgcgaa aacttcaact ataaagatcc ttacactagc gatagatttc       840
     gtgcaaacgc gccattagac tcggtatgta ccttctgttc taggcctggt catacattcc       900
     aagtctgtca taaacgccta aaacatattt catccaatgc accttcaact gatcttgttt       960
     ctaaacaagt aaacaacata gcgaattcac ctgtgacatg catgtatatc caaataggca      1020
     actttcaatt tggtgcaact tttgacagcg gggcagaatg ctgcgtcatg agagaaacta      1080
     ttgcaaaaaa ggtccctggt cgtagatatg acgttgttac atacctacgg ggaataggaa      1140
     cttttcctgt aatttcagtt aattctattg attgcgtttg cttgattgac ggtattcacg      1200
     tagaactaca atttgttatc cttccagaca acgaactctc aaccgatatc cttatcggta      1260
     taaatttatt aaaaagaact ggtttgagcg tcttggtaaa tagaagcggt gcaaagctta      1320
     cgtatcaatc acaaataatg catttagaat gtcataaccc attgtttgac aatatagatc      1380
     acgacctgga tgataacggc caaatcaaac aattaatgag aatgctagat aaatacgccc      1440
     atttgtttat tcgcggttat gctaaatctc gtgttaatac aggaaaatta caaattagac      1500
     tcaaaaatcc aaataaatat gttgaacgta gaccttacag actgagtccc ctggagaggg      1560
     caaccgtacg tagtattgta caagagctac tagacaacaa aatcattcgc gaaagtcgat      1620
     cgcccttttc gagcccgatt attctcgtga aaaagaaaaa tggcactgac cgactatgcg      1680
     tggactacag agagctcaat tcaaatacca ttcgcgatca ttaccccttg ccactgatag      1740
     gtgatcaaat taacaactta gctggcggga aattctttaa taccttcgat atggcttctg      1800
     gttttcacca gatattgatt tccgaatgct cgattgaaaa acggcattcg ttacgccaga      1860
     cggcctctat gaatatttga ccatgccgtt cggtttatgt aatgcaccag cagtttatca      1920
     aagatgtatc aatcgggctt taggtccttt attaaatgcg ggaagcgcca atactaatga      1980
     tagtgaccca aatgatagcg ttgcccaggt atacgtcgat gacgttatca gtaagagtag      2040
     aaacttcgca gatgggttga tttttattga aagaatccta atagctttgg aaaaggccgg      2100
     tttttccatt aatatcgata aatgcttatt ctttaaaaaa accgttgaat atttgggtaa      2160
     cataatagaa gatggcaagg taagacctag cccaaggaaa atagacgctc tggttaaatc      2220
     tccaatacct attaacataa aacaagttcg acagttcaac gggcttgcta gctatttccg      2280
     taggttcata ccaaatttcg cacacatcat gattcctctt tacgaattga ctaaaaataa      2340
     tagtaaatgg caatggactt ataaacatga agaagcacga aataagatta tacaatattt      2400
     aacttcttct ccggttctga tgatatttag cgaaaagttt ccaatagagc tattcacaga      2460
     tgcgagtagt ttaggtttag gtggtattct agtccaagtt gttaatgata gaccacatgt      2520
     agtttcctat ttcagtatgc gtacaactga ggctgagagt agataccact cctacgagtt      2580
     ggaaactctt gccgttgtca ggtcaattaa acatttccgt cattttttat atggtaggca      2640
     ttttaaagtt gtcactgatt gtaatgctct taaagcttct aaaaataaac aagaactttt      2700
     gcctcgagtg tatagatggt gggctttcct acaaaatttt gacttcgata tagagtatag      2760
     aaaaggcaac cgcatgcaac acgcagattt ctttagccgc aatatagaga cattcagagt      2820
     taatattatg accagagatt tacagtggtt gaaagtagag caacgccgcg ataatttact      2880
     tcgatctaaa atcgaatcca ttctcaaagg agaatcactc gatggatttc tcgttgaaga      2940
     cgacttactc aaacggatac gccaagatgg gctattagga aaccagaaac tcgttgtcgt      3000
     accgaagact ttccaatgga gtttgataaa taccttccat tcaagcctca aacatccagg      3060
     ctgggacaaa actttggcaa aaataagaga gacatattgg tttgataata tgagtactgt      3120
     ggttcgacaa tttgtagata attgcatagt gtgcaaaact tcgaaaaaca catcgggcgc      3180
     tatccaagca cagttacacc cgatattaaa accaacagtt ccatttgaaa tgattcacat      3240
     ggatatgact gggaaattag gcacatcaac tgacagagaa tatgtgatag taaccgtcga      3300
     cgcttacacc aagtatgtcc tgttgcatca cgcaaacgac aaaggacagc atagcaccct      3360
     tggagccctt aaaaatgcca ttcatttgtt tgggactccg aaactcgtga ttgtagacgg      3420
     cggacgcgaa ttccttggag tttttaagga ctactgtgaa agatttggca tagagattca      3480
     ttcaattgct cctggagtaa gcagagccaa cgggcaagtt gaaagaataa tggggaccct      3540
     aaagaatgcc ttaaccatga taaaaaatta cgaaactgtt gactggcata cagcactcga      3600
     tagtctacaa ctctcactta actgcaccat gcatgctaca actggcgtgg cacctctgac      3660
     attactaacg aaacgacaac attgtgttcc accggaattg ttaaacctag tgcagcttga      3720
     taacatgacg attgattttg aagttttgga acaacatgta aaacgcagaa taaccgaagc      3780
     agcaattaaa gaaaaggcaa gatttgattt aaaaaaagcg aagatacaga gatttcaaag      3840
     aggcgatttc gtcttggtaa agaacaatcc acgaaaccaa acttcactag atttaaaatt      3900
     tagtgcacca tacgaaattc acaagattct ggaaaacgat cgctacctca ttaaaccggt      3960
     agtaggaagg gggcgcccac gaaaagtagc ccacgaccaa ttgcgacgag cgccacaacc      4020
     tggtgagcag gcaaccgtgt cgccggagcg cgagcaccct gtagtctctc ataatgacga      4080
     tcaacaatag aaataaaaat gattaagtac tcatgaagta ccacctatat caataaataa      4140
     aaagccgtgg aggcgcattt tattatctct catgttatcc cgctgggacc acggcgtaca      4200
     ggaccgctca gaacccggct ccctatttcc atcgaaacaa agccttcgtg cctgtcacgg      4260
     agcaatggtc ctaaactcct caccttattt ttccatcaat acaaagactt tgtgtctatc      4320
     acagagcggt gttcctgatc ctgtcctaga tttcccgtca attcaaagac tttgtgtcat      4380
     atcacaaagc atttctgtca cgtgagaatg aaacaaaaca aactatgtac atatgtacaa      4440
     tcatttattc ttaaacgtac taacattaga agttgacaca ctaatccatt tttttaaagg      4500
     aactcgaagt agtttcttca tctttaatga acgtaataaa cgtaacaata actagtggta      4560
     aaggccggct ggtgcagagc gcgcaccgcc gatcagaatg gccg                       4604
//
ID   Gypsy-44_MSe-LTR repbase;    DNA;    INV; 631 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-631
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 970-970 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 631 BP; 202 A; 94 C; 109 G; 226 T; 0 other;
     tgtcgccgca aagtccaata acaatggtta agtgattgat tttaaccata tgttatttat        60
     tatattgcat taactattta ttatagctca aactacaaat ttgcaatatt gaatattgca       120
     aatagtaaac tgttgtttgc tttttattta agtttcgcaa tatctccaat agatggcata       180
     tcattacggc gatactgttt cctttttaat gtttaaattc tttctagatt ataaatttat       240
     tattaatatt cactaataat tatgtaaact tactttacta ttatgaagag atttattagg       300
     agatgttact ttaggatttc tatttaaaag taattcaata gactctgtgt aatattgacc       360
     aatcagagcg ccggattggt tggccaatcg gatcgctaga atagttttct tgtacaaggt       420
     tttctgttgg acagggcaga gtataatcag acctcgagta agaaagttct cttgggaaaa       480
     attatattgt caaactgttt taagtgtttt attggttgtc gtcacaaata aaaggatgga       540
     cccagaaaat aacagcaatg ccgaactctt gtcaatagag ggcggtgttg ctgcaccaca       600
     aaaaaacggc gctgaaactt cttcttcgac a                                      631
//
ID   Gypsy-44_SiCu-I repbase;    DNA;    INV; 4350 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4350
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5065-5065 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4280
FT                 /product="Gypsy-44_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDKGSTTHSQPEDDDSESETASTSTQTXHTPHTDPK
FT                 AKTKSKKAPEPNPKPKTKIRILRMATIGFLKQFAPSADDFEDWVGTFQSYL
FT                 VANDFNPKKDADSEKKCKNIFLSAIGLESYALLKSLISPSTLDSKTMDELI
FT                 KVLTTHIKPSPKAIAERYRFMSRKQRPTETGSQFLAALRSMATHCQFKDLD
FT                 ERLRDQFIFGLSNERAQRALFSQDDSVKIDDCLKTVVAMELAVTSTAIVRG
FT                 ESNTQEESVNKISKQRSQYGNSHNKQQKQQQSGNNSKQQKNNNKQHSQQQG
FT                 KFYHGKQRNQNNNSDCSRCGSSDHQQHQCPHKEAECYKCHKTGHFASMCRT
FT                 KKTANTNNVVTVTNIHNVKDVMNTDPIMVNVKINDCDVEMELDSGCPTSIL
FT                 SKTDWQNLKKPDLVKSDKIFRSYSGDTFKAIGELNAYVEYNGVRKTWSIPV
FT                 CQGASLFGRDFLYLFKYDFSGAITDNNVNQVTTPATAKEALDSLLNDYSDI
FT                 FKSPTATDRVKNFQARVILKDDASPRFLKARPVPYALKAKVDQELDLMEKT
FT                 GVIQKIEYSDWASPLVVVPKPDGRVRITGDFKWTVNSQLNVTQYPIAVPED
FT                 IFNLMNKSEYFSKLDGANAYHQLELDDNSKKFLVINTHRGLYQYQVLPQGI
FT                 ASSPAIFQEVMDRMLQSIPKTGAYIDDTLLAGKTIPEHLENLKTVFERFRK
FT                 FNFKLSKPKCKLMKTSVEFLGHCISKEGISTTNSKVNDIVNMKVPTDLPEL
FT                 SSFLGLVNFYGKFMSELSDLCEPLYRLRQKDVPWKWSSKCQAAVDAVKKRI
FT                 TTAPTLALFDPDLPIGVSCDASPVGVGTVLFHKMKDGSERPVAFASRTLSD
FT                 TERRYSQIEKEGLAIIFALKRFYKYLCGSKFLLITDHKPLVSIFGPKGKLP
FT                 TYVATRLHHWSLFLNQFQYDVVYRKSSDHGNADALSRLPTKSTEKNSDTAL
FT                 EASVHQVKNDQCGILPVTSKQIKNATARDVTLSRVMQFIASGWPKKLPEED
FT                 KFLQPYFIRKEELAVVDGVIMWGIRVVIPPKLKQKILEQLHECHFGIVRMK
FT                 SLARLHVWWPNIDKQIEETGKECIVCQANQPDPPSAPLHPWQFPERAWQRI
FT                 HMDLAGPFQNKMWLIMVDAYSKWPEVFCLNSITTDSVLLKLCEVISRFGIP
FT                 EQIVTDNGRQFTSSDFENFCQESKIKHLLSSAYHPRSNGEAERFVRTFKEG
FT                 MKPDDLPVSARLSRFLFRYRVTPHSTTGVSPSELLLGKRIRTRLDLVRPDI
FT                 KGSVNKAQARQEAAYNHGVKSREILPDHIVWVKTYSKNEEKWTRGKVVRAL
FT                 GPVTYEVDCSGRLYKRHVDDIRQASGKVTLDQGKVDAPVLEDASRVGVSTD
FT                 EACGLAAGKDSQIAATSNTLAPPKKRTRKQQKQ"
XX
SQ   Sequence 4350 BP; 1413 A; 939 C; 986 G; 1011 T; 1 other;
     ttggcgacga gtgtgtttcc tgaaagtttt gtgaaaattt ctgtaaaatt tgcagttttt        60
     aaagtgattg gggtaatttg ataactcctt tcatgagtga caaaggcagt actacgcatt       120
     ctcagcctga ggacgacgat tccgagagtg aaaccgcgtc cacatccaca cagacacmac       180
     acacacctca cacggatcct aaagctaaaa caaagtcaaa gaaagcacct gaaccgaatc       240
     caaaaccgaa aaccaaaatc agaatactca gaatggctac aattggattt ttgaagcaat       300
     ttgcgccatc agcagatgat tttgaggact gggtaggaac gtttcaatcc tatcttgtgg       360
     caaacgattt caatcccaag aaggatgctg atagtgagaa gaaatgtaag aacatttttc       420
     tctctgcgat cggactggaa agctatgcgc ttctgaaaag tctgatctcg ccatcaacat       480
     tggattccaa gacgatggac gaacttatca aggtcctgac aacacatata aaaccttcac       540
     caaaagctat agcagaaagg tacagattta tgtcaagaaa acagcgtcct acggaaaccg       600
     gcagccagtt tctagcagct ctaagaagta tggcaactca ctgtcaattc aaggatttgg       660
     atgaacgtct tcgcgaccaa ttcatatttg gattgagcaa cgaaagagcg cagagggctc       720
     tattctccca agacgactca gtcaagattg atgactgttt gaaaactgtg gtggcaatgg       780
     aactagcagt taccagcacc gcaatagttc gtggtgaatc aaatacgcag gaggaatcag       840
     tgaacaaaat ttccaagcag aggtctcaat acggcaacag ccacaacaag caacaaaagc       900
     aacaacagag tgggaataac tcaaagcagc agaaaaacaa caacaagcag cactcccaac       960
     agcagggaaa gttttatcat ggcaagcagc ggaatcaaaa taataattcc gattgttcga      1020
     gatgcggatc cagtgatcac cagcaacacc aatgccctca taaagaagcc gagtgttata      1080
     agtgtcacaa gaccggtcat tttgccagca tgtgccgcac caagaagact gctaacacca      1140
     acaacgtggt tactgtgaca aatattcata atgttaaaga cgtgatgaat actgatccaa      1200
     tcatggtcaa cgtaaagata aatgattgtg atgtggaaat ggagttagat agtggctgtc      1260
     cgaccagcat cttatcgaag acagactggc agaatctgaa gaaaccggat ttggtaaaat      1320
     cggacaagat ttttcgctca tacagtggag atacatttaa ggcaattggc gagttaaatg      1380
     catatgttga atacaacggg gtgagaaaaa cgtggtccat tccagtgtgc caaggagcgt      1440
     cactttttgg aagagacttt ctctacctct tcaagtatga tttttccgga gccattaccg      1500
     acaataatgt gaaccaagtc actactccag caacagcaaa agaagcacta gattcactgc      1560
     taaatgatta ttccgacatt ttcaaatcac cgacagcaac agatcgagtg aagaatttcc      1620
     aggcacgtgt cattttgaaa gatgacgcat caccacgatt cctgaaggca aggccagtgc      1680
     catacgcatt aaaagcaaaa gtggaccagg aactggattt gatggagaaa acgggagtca      1740
     ttcagaaaat agaatattct gactgggctt caccactggt agtagtaccg aaacccgacg      1800
     gtcgagttag aatcaccggg gattttaagt ggacagtaaa tagtcaatta aatgtgactc      1860
     aataccccat agcagtgcct gaagacatat tcaacctaat gaataaaagt gagtattttt      1920
     ccaaactcga cggagcaaat gcttatcatc agctagagtt ggatgacaac agcaagaaat      1980
     ttttggttat caatacccac agaggtttgt accagtatca agtactaccg cagggaatag      2040
     cgtcatcccc agctattttc caagaggtaa tggatagaat gctgcagagt attccaaaga      2100
     cgggagccta cattgatgat acgctactcg cagggaaaac aatacctgag catctggaga      2160
     atctgaaaac agttttcgag cgtttcagaa agttcaactt caaacttagc aagccaaaat      2220
     gcaagttgat gaagacatca gtggaattcc tgggtcactg catctctaaa gaagggatca      2280
     gcacaacaaa cagtaaagtg aatgacattg tgaatatgaa agtgccaact gatttgccag      2340
     agctttcatc attccttgga ctagttaatt tctacggcaa attcatgagt gaattgtctg      2400
     acttgtgtga gcctttgtac cgactacgtc agaaagacgt tccatggaag tggtcatcaa      2460
     aatgccaagc agccgttgat gcggtcaaga agaggatcac cacagcacca acactagccc      2520
     tattcgaccc agacttaccc attggggtat cgtgcgacgc atcaccagtt ggcgttggaa      2580
     cagttttgtt tcacaaaatg aaggacggtt cggagagacc agtcgctttt gcgtcacgca      2640
     cgttgagtga tacagaaaga cgctacagtc aaatcgaaaa agaaggactg gcgatcattt      2700
     ttgctctaaa acggttctac aaatatttat gtggttctaa atttctattg atcacagacc      2760
     acaagccgtt agtttccata tttggcccga aaggaaaact tcctacatac gtcgctacac      2820
     gtttacacca ctggagcctg tttttgaacc agttccaata tgatgtggtt tatcgtaaat      2880
     catcagacca cgggaatgca gatgccctga gccgcctccc aaccaaaagt acagagaaaa      2940
     atagcgacac cgccctagaa gcttccgttc atcaagtgaa gaatgatcaa tgcggaatat      3000
     taccagtgac aagcaagcag ataaaaaatg caacagcacg agatgtgaca ctgtccagag      3060
     taatgcaatt tattgcttcc gggtggccca agaaattacc agaagaagac aaatttctac      3120
     agccctactt catcagaaaa gaagagttgg cagtcgtaga tggcgtcatt atgtggggga      3180
     ttcgagttgt cattcctccc aaactcaagc agaaaatttt ggagcaacta cacgaatgcc      3240
     atttcggcat tgttcgaatg aaatcgttag cccgactcca tgtttggtgg ccaaatattg      3300
     ataaacagat tgaagagaca ggcaaggagt gcatcgtttg tcaagctaac cagcctgacc      3360
     ctcccagtgc accgctgcac ccttggcagt ttccggagcg agcatggcaa cggatacata      3420
     tggacctggc cgggcccttc caaaacaaga tgtggctcat catggtggat gcctattcaa      3480
     agtggccaga ggtcttctgt ctcaacagta ttaccaccga cagcgtttta ctcaagttat      3540
     gtgaagtcat cagcaggttt ggaatacctg aacaaattgt tacggataat ggcagacagt      3600
     tcaccagcag cgattttgaa aatttttgtc aagagtcgaa aataaaacat ttgctgtctt      3660
     cagcctatca tccacggtcc aacggggaag cagaacgctt cgtgagaacc tttaaggaag      3720
     gcatgaaacc cgacgaccta cctgtgagcg cccgcttatc aagattcctg ttccggtatc      3780
     gtgttactcc gcacagtaca actggagtca gcccgtccga gctattgtta ggaaaacgga      3840
     taagaacgcg attggatctt gttcgtcccg acatcaaagg tagcgttaac aaggcgcaag      3900
     caagacaaga agcagcgtat aaccatggcg ttaaaagcag agaaattcta cctgaccata      3960
     tcgtgtgggt aaaaacctac agcaagaatg aagaaaaatg gacaaggggg aaagtggtac      4020
     gcgctcttgg accagtaact tatgaggtgg attgcagtgg ccggctgtac aagcgtcatg      4080
     tcgatgacat tcgacaagcc agtggcaaag tcaccttgga ccagggaaag gttgacgcac      4140
     ccgtccttga ggatgcttcc agagtcggag tctctactga cgaggcttgc ggattggcag      4200
     caggcaagga ttcccaaata gcagctacaa gcaacacact ggcaccaccc aagaagagga      4260
     ctcgtaagca gcagaagcag tagtagcaat taagttaatt ttccttttaa aattactgta      4320
     atgaattatt aaaagaatgg aagaaaggga                                       4350
//
ID   Gypsy-44_SiCu-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-381
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5121-5121 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 381 BP; 130 A; 73 C; 56 G; 122 T; 0 other;
     tgtagtgtat gtagatacac acataaaatg aattattatg attttgaata atgtcttatc        60
     aaaatatgaa tatatacaaa taagttgtaa ttggtttgat ttgagattgc tgctatgagc       120
     ctatgtgcag actagataat ttgttgtctc tagtctggag aatattgaga atttagttaa       180
     tactcctgag gaagccaaga atctcctcag accatttcta gcattcaaac ttgttcaatc       240
     tcctgttatc tacacagaat aaactcactt actttctaag gcaaagaatc tacgcctacc       300
     agcaaagcac atcatttcta cggtcatctc tatgctcatc agcatcatca taaaataata       360
     cgcacactcg catacacaac a                                                 381
//
ID   Gypsy-44_SiOr-I repbase;    DNA;    INV; 4908 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-4908
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 378-378 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           872..1462
FT                 /product="Gypsy-44_SiOr-I_1p"
FT                 /translation="MDQSSIKHFACESIDKALIALEWRKWIRSVKLYLDAE
FT                 EITDVVKRKNKLLHLGGPQLQEIAFGLPGAVTEYDPTIKNDVFKALVDRLN
FT                 DHFSPQQNPCFERHVFRNMKPADGENLNRFLIRCRTQADKCYFGNSEQEAR
FT                 EISIKDKLIDMWAPIDLKQKLLEKESSLNDIIEQCQIYEQTRNQSAIMHKK
FT                 DIFNKLH"
FT   CDS           1386..4907
FT                 /product="Gypsy-44_SiOr-I_2p"
FT                 /translation="NNVKYMNRHETKVPSCTRKTFLTNSTSEAQVNRIEDS
FT                 RKRKHWEITKSHECTRCGGIHSLDKKNCPAINTTCHQCGRLGHFARRCRTG
FT                 KLKRTFGQNTSRHPNPPKTRRINCIDESNDESLPSTSGIGNYECFEVTSST
FT                 LLGLDSSNGIISVIIGGVSIDILIDSGASCNIINGRDWEKLLGNGAAILDI
FT                 QEDVTNSIKAYAANTPLIVKCQFKAPIRVGNSRERIETFMVVESGTTSLLG
FT                 RRTSITLGVLKLGLDSNINHIEKIEPFPKVANIKIKLTINPNIKPIQQPVR
FT                 RIPIAVEEKVEQKLNEALARDIIEPVQGPSPWISPMVIVFKPDDDIRICID
FT                 MRRANEAILRENFPLPTFESFMTKLSGATYFSRLDLASAYHQLELEEDSRP
FT                 ITTFITHKGLFRYKRLMFGINSAPEIFQRIFQGILAPCQNCLNYLDDIVVY
FT                 GETEADHDRYLNNLLTVLQNHNILLNEKKCHYKVKQLEFLGHILTSSGILP
FT                 DPKKIKVIRDFRAPLNKGEVRSFLGMVTYLGKFIPNLGTLTEPLRLLIRNE
FT                 TKFNWGQIEQESFQKLKNELVNLPTLSFFDMKLRTQLIADASPVALGAVLL
FT                 QIDGDDQPHVISFASKSLTAVERRYSQTEKESLALVWSVERFYYYLAGIQF
FT                 ELITDHKPLEAIFKPTSRPPARIERWLLRLQAFKFTVKYKCGKSNIADPLS
FT                 RLCKIESDPTFDEPNECQIQTIITESIPKALSISQVIMNSKVDPDIPEVIE
FT                 KLAGNSWNVNDKSAYYPFRMELTSMGPLLLRGNKIVIPRNLRIQVLRLAHE
FT                 GHPGESVMKRRLRSKVWWPQIDKEAEKHVKSCRECLLVSQPSRPSPMVRQM
FT                 LPSGPWQYLAMDYMSGEPNQDHLLVIIDYYSRYVEPIFTKSTTSSTVIRAL
FT                 ETTFCRFGLPKTIKVDNATNFNSEEFKKFCEINGIEIVNSPPYWPQANGEV
FT                 ENINKSLKKRLQISYLNNERDYQRQIMDYITMYNVTPHGTTGKSPSELLFN
FT                 RRIKDKIPCLEDINIETLDEEVYDQDLVQKDKGKRREDSRRRANEKEIKPG
FT                 DKVVVKNIFFPHKLTANFSNIEYNVLHRNGNELTLFGDGKTIKRNVAHVKR
FT                 IPDTSPTVDLPEAPPDPSTSSSTLPPTQPTSEDTTTSEPPPXGGQPEEEDS
FT                 NAPRVTPLVLVKKGG"
XX
SQ   Sequence 4908 BP; 1765 A; 894 C; 965 G; 1283 T; 1 other;
     aattggcgac gaggtaaata cttaacaaca aataatcacc tagtaaatat ataggtaaat        60
     agtgcctatt taaaataaaa tgcacaagta aaagcataaa gtattaagag tgctgtaatt       120
     ttagatataa agagacctaa tactaccaaa taagggagtg gattaaattc tactaaaata       180
     ggagtggatt aaattctact aaacaggagt ggattcaatt ctactacaag agtggattaa       240
     attctactaa aggagtggat taaattctac tagaggagtg gattagattc tactaaagga       300
     gtggattaaa ttctactgaa ggaaagctga ttattgagac taataagcac tgtaagtgaa       360
     acaaagtaat ttacaatagt tagttggttc ataacgcttt aatgtcataa aaaaatggca       420
     atttcagaag ctattattcc taaaaaaaat agctaggggt taaagcaatt tattacatta       480
     taaaaatatg atatatttgg ttaactataa tattctttga tttggtgcat aaagctttca       540
     atattattta aaaaaaaaat atatgtattt atacacatct ggttttaatt ttacattatg       600
     aagttttagt aatctggcga atttcaaagc cttgtgacat taaagtggta tgtttccgga       660
     ggaaatctaa tgcatggtca tggtcgcact ttcatattat gatgatcaat gtttcttggg       720
     ttgttagggg gaactgttgt cgcgttttga gaatacccgt gcgtcatcaa tgacacaaaa       780
     aaaaaaaaat gaataggatg attatatgtt attgaaaata ctacaataga ataaatttta       840
     ttcctagata tcctcggaaa aaaaaagtgc aatggatcag tcgtctatta aacatttcgc       900
     ttgtgagtct atagacaaag ctctaatagc tcttgaatgg agaaaatgga ttcgttcagt       960
     aaagttatat ttagatgcag aagaaattac agatgttgta aaaaggaaaa ataaattatt      1020
     acatcttgga ggtccgcaat tgcaggaaat tgcctttggc ttgccaggcg cggttacgga      1080
     atatgacccc actattaaaa atgatgtatt taaagcattg gtagatagac ttaatgacca      1140
     tttttcgcct caacaaaacc cttgctttga gagacacgta tttcgcaaca tgaaacccgc      1200
     ggatggagaa aatttaaata gattccttat aagatgtaga acacaggccg ataaatgtta      1260
     ttttggtaac agtgaacaag aagctcgaga aatcagcatt aaagacaagt taattgatat      1320
     gtgggcaccg atagatttaa aacagaaact tctggaaaag gaatcatcat taaatgatat      1380
     tatagaacaa tgtcaaatat atgaacagac acgaaaccaa agtgccatca tgcacaagaa      1440
     agacattttt aacaaactcc actagcgagg ctcaagttaa tcgaattgaa gattcacgga      1500
     aacgcaaaca ctgggaaatt acaaaaagtc atgagtgcac acgctgcggt ggaatccaca      1560
     gcttagacaa gaaaaattgc cctgccatta atactacatg tcatcaatgt ggtcgtttag      1620
     gacattttgc tagaagatgt aggacaggaa aacttaaacg tacattcggt caaaacacta      1680
     gccgccaccc caatccgccg aagacaagaa gaattaattg catcgacgaa tccaatgacg      1740
     aaagtctccc ttctactagt ggtatcggca actatgaatg tttcgaagtt acgagttcaa      1800
     ccctacttgg attggacagc agcaatggaa taatctcggt gataattgga ggtgtcagca      1860
     ttgatatctt aattgattcc ggagcctcgt gcaacattat aaatggacgt gattgggaaa      1920
     aactactcgg aaatggagct gcaatacttg acatccaaga agatgtaact aattcgataa      1980
     aagcgtatgc tgcaaatact ccgcttattg taaaatgcca attcaaagcc ccaatacgcg      2040
     tgggcaatag tcgtgagcgt attgaaacat ttatggtggt agaatccggt acaacctcac      2100
     tgctgggaag acgcacatcg ataaccttag gagttttaaa gttgggacta gactccaata      2160
     ttaatcatat tgaaaaaatt gagccttttc caaaagttgc taatattaaa ataaaactca      2220
     ccatcaatcc aaatataaag ccaatacaac aaccagtgcg tagaattcca attgccgttg      2280
     aagaaaaagt ggaacagaag ctgaatgaag cacttgccag agatatcata gagcccgtac      2340
     aaggaccaag cccttggatt tctcccatgg tcatagtctt taaaccagat gatgatattc      2400
     gtatttgcat cgacatgagg agagccaatg aagctatact tagagagaat tttcctcttc      2460
     ccacttttga gagcttcatg actaaactga gtggggccac ttacttttcg cgcttggatc      2520
     tagctagtgc atatcatcaa ctagaattgg aagaagacag tcgaccaatt actactttta      2580
     taacacataa aggattattt aggtacaagc ggctaatgtt tggcataaat tccgctccag      2640
     aaatatttca gcgtatattt caaggtattt tggctccttg tcagaattgt ctcaactacc      2700
     tcgatgacat agttgtttat ggagaaactg aagctgatca tgaccgatat ttgaataact      2760
     tactgacggt actacaaaat cataacatct tgttaaacga aaaaaagtgc cactataagg      2820
     ttaaacaatt ggaattttta ggacatattc taacatcttc cggaatatta ccggacccaa      2880
     agaagattaa agttattcgt gactttcgtg caccgttaaa taaaggagaa gtaaggagtt      2940
     ttcttggcat ggttacatac ttgggaaaat ttatacctaa tctgggaacc ctgaccgaac      3000
     cactaagact attaataaga aatgaaacaa aattcaattg gggacaaata gaacaagaaa      3060
     gttttcaaaa attaaaaaat gaattggtga atttgccgac tctgtccttc tttgatatga      3120
     aattacgcac gcaattgatt gccgacgcca gcccagtggc cctgggcgct gtgctgctac      3180
     agattgatgg tgacgatcaa ccacatgtaa tctcatttgc aagtaaaagc ctcaccgctg      3240
     ttgaacggag atactctcaa actgaaaagg agagtctggc attggtttgg tctgtcgaaa      3300
     gattttatta ctacctcgct ggaatacaat ttgagttgat cacagatcac aaaccacttg      3360
     aagcgatttt taaaccaact tcaagaccac ccgcaaggat tgagagatgg ttacttagac      3420
     tccaagcttt taaatttact gtaaaatata aatgtggaaa atcaaacatc gcggacccct      3480
     tgtcgaggtt atgcaaaata gaatcggatc caacttttga tgagccgaac gaatgtcaga      3540
     ttcaaactat tataacagaa agtataccca aagcgttatc aatatcccag gtaattatga      3600
     acagcaaagt tgacccagac atcccagaag ttatcgagaa attggcaggc aattcatgga      3660
     acgtaaatga caaaagcgcg tactacccct ttcgaatgga actcacttcc atgggaccac      3720
     tactactaag aggaaataaa attgtaatcc cgagaaatct gcgaattcaa gtgttgaggc      3780
     tagcacatga gggccacccc ggagaatcgg tgatgaagcg aagattacgt tcaaaagtct      3840
     ggtggccaca gatagacaag gaggcggaaa aacacgttaa aagctgtcgc gaatgcctac      3900
     ttgtatcaca accgagcaga ccttcaccaa tggtaagaca aatgcttcct tcagggccat      3960
     ggcaatactt ggcaatggat tatatgtcgg gagagccaaa tcaagatcac ctactggtaa      4020
     taatcgatta ttattcccgt tatgtagaac caatttttac aaaatcaacc acatcgtcaa      4080
     cggtcattag agcacttgaa acgaccttct gtcgatttgg tctaccaaaa actattaaag      4140
     tagacaacgc tactaatttc aatagtgaag aattcaaaaa attctgcgaa ataaatggca      4200
     ttgagatagt gaattctcct ccttattggc cgcaggcaaa tggggaagtg gaaaatataa      4260
     ataaatcact aaagaaacgg ctacaaatca gttacctgaa caatgagcgc gactatcaac      4320
     ggcagattat ggactatatt acgatgtata atgttacacc tcatggaaca acaggaaagt      4380
     ccccgtcaga acttttattt aacagaagaa taaaggacaa aattccatgc ctagaagata      4440
     taaatataga aacgttggac gaagaagttt atgaccaaga cctagttcaa aaagataaag      4500
     gaaaaagaag ggaagatagc agaagaagag caaatgaaaa ggaaattaaa ccaggagaca      4560
     aagtcgtggt aaagaatatt ttctttccac ataaactgac agcgaacttt agtaacatag      4620
     aatataatgt cctacatcga aatgggaatg agctaaccct attcggagat ggaaagacga      4680
     tcaagcgaaa tgttgcccac gtaaaaagga taccggacac ctcacctacc gtagatctac      4740
     ccgaagctcc tccggacccc tcaacatcga gttcaacact tccaccaacc caaccgactt      4800
     cagaagatac gaccacatca gagccgcccc cggmtggagg ccaacccgaa gaagaggact      4860
     cgaacgcacc ccgtgtgact ccacttgttc tggtgaaaaa aggaggga                   4908
//
ID   Gypsy-44_SiOr-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   02-DEC-2020 (Rel. 26.01, Created)
DT   02-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-220
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 412-412 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 220 BP; 58 A; 25 C; 50 G; 84 T; 3 other;
     tgtgkcaacc ggctgatgcc cgaaaataaa aaattgttta tatgtctttg ctgcgatatg        60
     aattatcgat cggccgggca gcgggcgatg agtatttgtg tagataagtt agttagtatg       120
     tatttgacgt tgtttkkaat attattgttt gttaataaat gtattgttat tgcttatttc       180
     gtgagtgtat aatttattat tgtgaacctg gactagcaca                             220
//
ID   Gypsy-44_SpEx-I repbase;    DNA;    INV; 5552 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5552
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4112-4112 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           305..5233
FT                 /product="Gypsy-44_SpEx-I_1p"
FT                 /translation="MEHSGSPVLPSGSVSSLQESGQRRRHASSLGPQHSPS
FT                 QQAPDRVPSRLLLSPARPESSSQQPRGETPEQQRSRSRTSRRSRERFYEHR
FT                 SPRRSRSRTSHRSREMLHEHRPPRRSRSRTCLRSRLTLDEHQSPRRSRSRS
FT                 SHRPQERRQSPQRPRSRTSQAVYHQRGQXWRSRDQQHHSPRRSPSRLRDVS
FT                 CLSSCRCGCNKHPQRTIDQQPTDENKVSLASPSLSNSNNSTLNMLIQALKA
FT                 VTPDSDKVNPQKNTVPEFDPARKEQTITMWLHKVNECATIYGWSDKQVVHF
FT                 ALPKLTGVAKRWYEGLPSVLFSWDEWQSKLLAAFPSDENYGQMLSDMLARR
FT                 AKFGDSLEDYFYDKIALINRCSITGRKAVDCVLHGIDDRSVRLGAEAVQFD
FT                 DLDKLLTYLRNSRNVKINPDKRNSKPLPLKNSADLSQSSNQSQSTSFKRKI
FT                 RCANCKTEGHIVSQCSLPIKKCTKCFRIGHETEKCYFNASTSEKSVNRVGS
FT                 DSDAGQKFFKTALVNKVPIEAFVDLGSECSMLKESYFTKLGIKDIELDGLP
FT                 VLKGFGNSFVAVLGRINVQIEIDGVGAYTELLLVPDDAMKMPLMIGQTYTE
FT                 QPHILIHKTCERFDILLNLTNVVTNNKISLHSLESVIVSGLTIVKVYTNPK
FT                 FTGVLFVEGGLRTKNGVHHYIPTGIYEFNELGEGTIVINGLNSKTFSVIKD
FT                 DLVARGKIAYEETKRDILRVMAQDHQSQSRPITLSDLHIGNNLDESTSNDL
FT                 LLLLNRFRNCFAFSLSELGNCQISEMSISLQDNDPVVYRPYRLATKEKEIV
FT                 REMIDELLENEIIRPSTSPYSSPIVLVRKKTGDYRLCIDYRALNKKTVKEN
FT                 YPMPLIDDQLDVLSGNNYFTTLDLASGYYQISINEQDKHKTAFVTPEGHFE
FT                 FNRMPFGLANAPATFQRIMHQVLGSLRYKEALAYLDDIIIPSPDIPVGLKR
FT                 LELVLQVLSNAHLTLKLEKCVFFGRSVDYLGFEVSKDGIKPGSKKISAVEN
FT                 FPSPTNQHQIRQFLGLASFFRRFVQGFSILAKPLTQLLRKDAAWVWGQDQQ
FT                 TAFEALKNKLIQKPILALYNPKADTELHTDACKIGIAGILLQRDDQAKLRP
FT                 VAYFSRQTTPEEQNYSSYDLETLALVASLQKFRIYLVGISFRVITDCNSLR
FT                 ATFSKRDMLPRVARWWTLMQEFDFNIEYRAGVSMSHVDALSRNPVEQQIQY
FT                 SVCNVTESNWITTVQNADSEIQRIIGILSDPNLEDVTDIKNNYKLKNGKLF
FT                 RVTAEGDRWVVPKGVRWQVVKQNHDDIGHFALDKTLEKIKLYFWFPKMRRF
FT                 VKKYVTSCLECAYSKASAGKKPGYLNPIVKVSQPFDTVHLDHVGPFVKSCR
FT                 GNIYILVIIDAFTRFIYVKAVRNTRSSTSIKVLREYMGIFGVPRRIISDRG
FT                 TSFTSDSFKSFTTEKGIVHVLNAVATPRANGQVERYNRVIVDSLTAKCAGT
FT                 SESKWEEHLPEVQWGINNTFNKGINRTPAEALFGVRPKGVSDSKLIVAIDE
FT                 GVTTNNKESDLTTIREEISSFVASSQQQQKERYDKTRSKPVQFNEGDLVRV
FT                 ERQVPATGNSKKLVPKYQGPYKITKVYAHDRYQIEDTPLTRKGNKKYSTVV
FT                 AVDKLKPWLNFSRPNDNILSEEESD"
XX
SQ   Sequence 5552 BP; 1730 A; 1116 C; 1153 G; 1547 T; 6 other;
     tctcagaagt gggatagaca gaataatcta tgtactttat atgtatgtac agggtgtgtt        60
     tgggacatat cataattctt taaaggcaaa taactaacta acaaggattt tggaaccaaa       120
     attctagcaa aatttgtttt tttttttttt ttttttattt taccccaagt atcattttwa       180
     tcttctaatc tacgctgaat tttaattatg ttagtatatg attgctgtat ctaattttcc       240
     cgttttacac ttatccatta atgtttatct ataaatgtga ggaawacagg tacttgtgct       300
     agcaatggaa cattcaggct ctcctgtgtt gccctctggt agcgtatcta gcctacaaga       360
     atcgggccaa cgacgccgtc atgcatccag tttgggaccc cagcattctc ccagtcagca       420
     agcgcctgac cgggtcccaa gccggttgtt gcttagccca gcaagaccag aatccagtag       480
     ccagcagcca aggggcgaga caccagaaca acagcggtcc agaagccgta cgagccgtcg       540
     gtcaagagag agattctatg agcatcgatc accgcggcga tcccgaagcc gaacgagcca       600
     tcggtcaaga gagatgctcc atgagcatcg accaccacga cgatcccgaa gccggacgtg       660
     ccttcggtcg agattgacgc tcgatgagca tcaatcaccg cggcgatccc gaagccggtc       720
     gagccatagg ccccaggaaa ggcgacaatc gccccaaagg cctcgaagcc gtaccagcca       780
     agcagtctac catcagcgcg ggcagcsgtg gcgcagccgt gaccagcagc atcactcacc       840
     tcgccgcagt cccagccgac ttcgggacgt aagctgcctg agtagttgtc ggtgcgggtg       900
     caataaacac ccacaacgga ccattgacca acaaccaacg gatgagaata aggttagttt       960
     agcatcacct agtctatcca attccaataa tagtactttg aacatgttaa tacaggccct      1020
     taaggcggtt actcctgact cagataaagt aaatccacaa aaaaatactg tacccgagtt      1080
     cgaccctgct aggaaggaac aaaccataac tatgtggctm cacaaagtaa acgagtgcgc      1140
     cactatatat ggttggtctg ataagcaagt tgtacacttc gctcttccca aattaacggg      1200
     ggtagcaaaa aggtggtacg agggcctccc ctcagtctta ttttcttggg atgagtggca      1260
     atctaaacta cttgcagctt tcccgtcaga tgaaaattat ggccagatgc ttagtgatat      1320
     gctagccagg cgcgctaagt tcggggactc tctagaagat tacttctacg ataaaatagc      1380
     ccttataaat aggtgctcta ttaccggaag gaaggctgta gattgcgtac tgcacggcat      1440
     agacgaccgc tctgttaggc taggcgcaga ggcggtacag ttcgatgatt tagacaaact      1500
     attaacttac ttaagaaatt cgcgtaacgt caaaatcaac cctgataaac gtaattctaa      1560
     acctcttcct cttaagaatt ccgccgatct ttctcaatcc agtaatcaat cgcaatcaac      1620
     ttcatttaaa aggaaaatac gttgtgccaa ctgtaagact gaaggacata tagttagtca      1680
     gtgtagtctt cctataaaaa aatgcactaa atgttttaga atagggcatg agaccgagaa      1740
     atgctatttt aacgcatcta catctgagaa atctgttaat agagttggct cagactctga      1800
     tgctggtcaa aaattcttta aaaccgcgct ggttaacaaa gttccaatag aggcatttgt      1860
     agatctaggt agcgagtgct ctatgctaaa ggagtcttat tttactaagt taggaatcaa      1920
     agacatcgaa ctcgatggtt tgcctgttct aaaggggttt ggtaattctt tcgtggcagt      1980
     tttagggaga attaatgtgc aaattgaaat tgatggtgtg ggagcttaca cggagctgct      2040
     tctggtccca gatgatgcta tgaaaatgcc actgatgata ggtcaaacat acactgagca      2100
     accacatatc cttatacata aaacttgtga acgattcgat attctcttaa atcttaccaa      2160
     tgtagtaaca aataataaaa tcagtttgca ctctttagag tctgttatag tatcgggctt      2220
     gactattgtg aaagtttata ctaatccaaa attcactggg gtgttgtttg tcgaaggtgg      2280
     cttaagaact aagaatggtg ttcatcatta tatacctacc ggcatctatg agtttaatga      2340
     actcggcgag ggtacgattg ttattaatgg attaaattcc aaaacatttt ctgttattaa      2400
     agatgactta gttgctcgtg gtaaaatagc atatgaagag accaaaagag acatactccg      2460
     cgtaatggcc caagaccatc aaagtcagtc cagacccatt acattgtcgg acttacacat      2520
     cggtaacaac ttagacgaat caacgtctaa cgaccttttg ctgctcctta atagatttcg      2580
     taactgtttc gcattttcac tgtccgaatt aggtaattgc caaatatcag aaatgtcgat      2640
     ctccttacaa gacaatgatc ctgtggtata tagaccgtat cggttagcca caaaggaaaa      2700
     ggaaatagtt agggaaatga ttgatgagct gcttgaaaat gaaattatta ggccctctac      2760
     ctcaccgtac tccagtccta tagttctggt taggaagaaa accggcgact atcgcctctg      2820
     catagactat cgggcactaa ataagaagac agtaaaagaa aactatccaa tgcctcttat      2880
     tgatgaccaa ctagatgtcc tttcaggaaa taattatttc acaaccctcg atttggcatc      2940
     tggttactac cagatttcta taaatgagca agacaagcat aaaacwgcat ttgtcacccc      3000
     tgagggccac tttgagttta atagaatgcc tttcggcctc gctaacgccc ctgccacctt      3060
     ccaaagaatc atgcaccagg ttcttggtag cctccgttat aaagaagctc tagcatatct      3120
     agatgatatt attataccat cacccgatat tcctgtaggt ttaaagcgcc tagaactcgt      3180
     attgcaggtt ttgtctaatg ctcatcttac tttaaaacta gaaaaatgtg ttttctttgg      3240
     tcgttccgta gattatttag gctttgaggt ctcaaaagat ggtataaagc cagggtctaa      3300
     gaaaatctcc gcagttgaaa actttccttc cccgactaat caacaccaaa ttcggcagtt      3360
     cttaggatta gctagtttct tccgacgctt tgtacagggt ttttctatac tggctaaacc      3420
     attaactcaa ctccttagga aagatgccgc atgggtatgg ggacaagatc agcaaaccgc      3480
     ttttgaagcg cttaaaaata aattgattca aaaacctata ttagccttat ataatccaaa      3540
     agctgatact gagcttcata ccgatgcgtg caaaataggt atcgccggca ttctactaca      3600
     aagggacgat caagccaagc taaggccagt tgcttatttc agtaggcaaa ctacaccaga      3660
     ggagcaaaac tattcctcct acgatttaga gacccttgcg ctagtagcct cccttcaaaa      3720
     atttagaatt taccttgtag ggattagttt tcgcgtaatt actgattgta attcattacg      3780
     agccacattt tcaaaacgcg atatgctacc acgagttgcc cggtggtgga cactaatgca      3840
     agaattcgac tttaacattg aatatagagc aggggtgtct atgagccatg ttgacgcctt      3900
     gagtcgcaac cctgtcgaac aacaaataca gtattctgtt tgcaatgtaa ctgaatcgaa      3960
     ttggattacg acggttcaaa atgcggattc agaaattcaa cgaatcattg gcattttgag      4020
     tgatccaaat ttagaagatg taactgatat taaaaacaat tacaaattaa aaaatggtaa      4080
     attatttaga gtgactgctg aaggcgatcg ctgggttgtg cctaagggcg ttmggtggca      4140
     agtagtgaaa caaaatcatg acgatatagg ccatttcgct ttagataaaa ctcttgagaa      4200
     aataaaactt tacttttggt tccctaaaat gagacgcttt gtaaaaaaat atgttacatc      4260
     atgtttagaa tgcgcatatt caaaagcttc agcgggtaaa aaacccggtt accttaaccc      4320
     aatcgtaaaa gtcagtcagc catttgatac ggtacatttg gatcacgttg gaccttttgt      4380
     taaaagttgt aggggtaaca tttatattct agttattatt gatgcattta cccgttttat      4440
     ttatgtaaaa gcagttcgta ataccagaag tagtacgtcc ataaaggtat tgcgcgagta      4500
     catgggtatt tttggtgtcc cgcgtagaat tatatccgat aggggaacat cctttacaag      4560
     tgattccttt aagtctttca cgactgagaa aggtattgtc catgtcctta acgcggttgc      4620
     cacccctaga gcgaacggac aggtcgagcg ttataatagg gttatagtag attctctgac      4680
     agctaagtgt gcagggacct ctgaaagtaa atgggaggag cacttacccg aagttcaatg      4740
     gggaattaat aacaccttta ataaaggaat taatagaaca cctgccgagg ctctctttgg      4800
     tgttcgaccg aaaggtgtta gtgatagcaa gttgatagta gccattgacg aaggtgtcac      4860
     aaccaataac aaagagtctg atcttaccac catccgagag gaaattagta gttttgttgc      4920
     tagttctcaa caacagcaga aggaaagata tgataaaacg agatccaaac ctgtacaatt      4980
     taatgaggga gatttagtta gggtagaacg acaagtacct gctacgggta atagtaagaa      5040
     gttagtccca aaatatcaag gtccttataa aattacaaaa gtatatgcac acgatagata      5100
     tcagatagaa gataccccat tgactagaaa aggtaataag aaatattcca ccgtggttgc      5160
     ggttgacaaa ttaaaaccgt ggcttaactt ttcccgaccc aatgataata ttctgagtga      5220
     ggaggaatca gattagtttg catgtcttag taaattaata ttcatagtta gaattataaa      5280
     aataatatgc agaacaaaga ggtctgcaaa tttatattat aatgcagaac aaagaggtct      5340
     gtaaatttat aaatattttg agtagtcagg acaatgaggc ctgtaactac aataaaaatt      5400
     tgtgtgatac ccagaacaat aacttctgtg gttttaataa aatcgaacgg gacaatgagg      5460
     ccctcctttt ttttacagag atattattat ttttcagagt agttatgtaa tagtttcgtg      5520
     taaggacaca cttaaggttg gatggccgaa tc                                    5552
//
ID   Gypsy-44_SpEx-LTR repbase;    DNA;    INV; 515 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-515
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4173-4173 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 515 BP; 170 A; 68 C; 70 G; 207 T; 0 other;
     tgttagctat ttattcaatt atgtgattat tactattatt ttttaattgt aataaatatt        60
     gatttaattt taaactgttg aattaatgta tttgataaac tgtaaaagtt gtgaaacgat       120
     gacactcggt cggccgccat cttgttattt gaggttataa aagcaagcgg cacagcgacc       180
     gagagtcatt cgttacttga gcttcgcctc gttcacatca acgacatcat attgatttct       240
     tgtaagtacc tactttcttt gttttgtgtg actgatgctg ttatttaatc ttataattat       300
     ttgattaatt aaactatcta tataatataa tataatatat atttaatgac catattaaac       360
     tgttgtaagt aaataaataa gtattgttat taccctacga atatatgaat catacctgta       420
     gatgttctgt atcatttctt aaaataaacc tattaagtaa tatataaatt tcattatttt       480
     acaatgtaat gacttttaaa ctaaggtgcc tgaca                                  515
//
ID   Gypsy-44_TrVa-I repbase;    DNA;    INV; 5061 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5061
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 289-289 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           465..4667
FT                 /product="Gypsy-44_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSDSSSPPEFRGFDVQPAVLPQSSSGTFIAPQPVQS
FT                 EVTMPDPPRKITLSGSVQPLVLSGDLNSNWKRWYQSFKLFLCASGLDAEDD
FT                 KRKVALLLHYIGEDALDIFNSFNVDEDTVRFDDLLAKFKSYFVPQTNSTVE
FT                 SHKFFTRKQSPNESLDEFVTDLINRSKNCDFGELKDRLVKDIFICNMHEKY
FT                 QFVREKLLLEENLSLEKALQISKSLVLSQVQANQITNGSTSHSSMSVSVHA
FT                 LDNSYRHRSHHKSKFNRRDSRFSSKNSSSRSKSPQKHKRSTHSSSSSKYSP
FT                 VSNSNSKCSNCGQTHRYRCPATNVRCRKCHNYGHYHSMCSVSVKTLTFNPD
FT                 HVTVSNEHDALFVGCLTQRYAKTCWTHPVFVNDKPVHCLLDTGSQANVMSL
FT                 STLNKLKVPNLVLTPSSQRVTSFTGDRVPIAGEIELECSLKLNNIVKKFKI
FT                 YFIVADINCPTVLGLETCSSLGLITRVFSVEAETQLGTSKFRLATPKKDCS
FT                 SDELLSQFRHLFEGLGCLPGECHIYLDTKVHPKVDPPRKVPFKLHDRLKHE
FT                 LDAMEKSGVIKKVTYPTSWVSSLLLVEKKTGKLRVCLDPRNLNQALKRSHY
FT                 PIPTLDIIRSKLAGAKHFSTLDASSGFWQIKLDEESSRICTFNTPFGRYSF
FT                 TRLPFGINCAPEIFHSRMIDIFGDIPGVIVYFDDLLIFGRTKEEHDRRLRQ
FT                 VFLRAAKVHLKFNMEKSRICQSKVRYYGQIISADGVAADDNKVQAITKMVS
FT                 PSCKKDLQRFLGLVNYLGQYIPNLAKETEGFRNLLKKDALWEWSSEHEAIF
FT                 CRLKQILCSAPVLAHFDPNQPITLSVDASQSAVGAVLLQNGHPVSYASKTF
FT                 TESQKRMAQIEKECYAIVFGCLKFHQYIYAQDVLVETDHSPLVTLFKKPLA
FT                 DTPARLQRMMLKLQPYTLNVTYKKGKEMYIADTLSRAALPDMSEDELDRDI
FT                 IIHVNALNSNLPVSEEKRDWLKNATKNDETLQLLADYYQNGWPEKKSDVLL
FT                 SAQPFWNYRELIHSVDGLMLKNASIIIPQNLRKEILKIIHQGHLGIARSKS
FT                 FARGIVFWPNMNQDIENVVKSCPTCLSHRSDNPPEPLLPHKVPKLPWEKVG
FT                 VDLLEFDGKKYLIIEDYYSNFFEVEPLVSSIAPKVIVALKTNFARHGIPVE
FT                 MISDNGPPFNSQEIFDFTRNWGITHTFSSPYLSRSNGLVESGVKIFKTILS
FT                 KCKMSNEDPFLALLNYRTTSRNNIESPAKLLMSRSLRTLLPTTEKHLKPKS
FT                 VSFNLHQQNKVKNQSTMKFYYDRQTQPKSILKPGDPIYFKKDPKSLWIPGK
FT                 IISQHQQPRSYNVQSADNVNYRRNRQHIISTPSQSVTVPPAQDVPSNPINS
FT                 SNPSGEPADPNSRNNQPPILRRSNREIRPPRRLVDSFI"
XX
SQ   Sequence 5061 BP; 1507 A; 1094 C; 836 G; 1624 T; 0 other;
     tggtgtcagg tgtaaagtaa ttcgattcgt gtcgtcgccg aatttcggta tcggtttcgt        60
     agtcatgtgt tcgtgtttct ttttacgttt ttattaactt cgacacttcg cctcacactc       120
     gtgcctcgtg ctcgtcgcga ctcgcgaaca atgaaccgac cttctctatt ctatgttcgt       180
     gactcgtgaa gcatccaatc atgaatttta ttcacaattt cagttcctaa accaacctta       240
     accgtccatg tttccttaaa tttgtctttt tacccgattg tttcctcttc cctatctatt       300
     caccttgcac ataacctgtt accacatgca gtcagctgat tgatccacag gtacttttca       360
     gattctgatc catctcatct tccaattgag cctctttcca tgtctttata ccgtaaatcc       420
     ttttgtcatc gtttctcctg gtccttttaa ctcgtccaaa attcatgagt tccgattcgt       480
     cttcgccgcc agagtttcga ggattcgacg ttcagcctgc ggttctgcca caaagctctt       540
     ctggtacttt catcgctcct cagccagtgc agtctgaagt caccatgcct gatcctccaa       600
     ggaagattac tctttcaggt tctgttcaac ccctggttct ttctggagac ctcaatagca       660
     attggaaaag atggtatcaa tcgttcaaac ttttcttgtg tgcaagtgga ttagatgcgg       720
     aagatgacaa acgcaaagtg gcgttacttt tacactacat aggtgaagat gccttagaca       780
     tatttaattc ttttaatgtt gatgaggata cagtaagatt tgatgatctt cttgcaaaat       840
     ttaaatctta ttttgttcct caaactaact cgactgttga aagtcacaag ttttttacac       900
     ggaaacaatc accgaatgaa tctctagatg aatttgttac cgatctgatc aaccgtagca       960
     aaaattgtga ttttggagaa ctcaaagatc gacttgtcaa agatattttc atctgtaata      1020
     tgcatgaaaa ataccagttc gtgcgtgaaa aattacttct tgaagaaaac ctttcgttag      1080
     aaaaagcgct tcaaatttcc aaatccttgg ttctatcgca agtgcaagca aaccaaatta      1140
     ccaatgggtc aacttcacat tcttctatgt ctgtttctgt tcatgctctt gataattcct      1200
     atcgacatcg atcacatcat aaatctaaat ttaatcgtcg tgatagcaga ttttcgtcta      1260
     aaaattcatc atcacgatcc aagtcgcctc aaaagcacaa aagatctact cattcttctt      1320
     cctcatcgaa atattctcct gtgtctaatt ctaattccaa atgttctaat tgtggtcaga      1380
     cacatcgcta tcgctgtcct gccacaaatg ttcgttgtcg caaatgtcat aattatggtc      1440
     actaccattc catgtgttca gtttctgtca aaacgctaac gtttaatccc gatcatgtta      1500
     ctgtgtcaaa tgaacatgat gcattattcg ttggttgcct aactcaaagg tatgctaaaa      1560
     cttgttggac gcatcctgtc tttgtcaatg ataagcctgt acattgtcta ctcgatactg      1620
     gtagtcaagc aaacgtgatg tcactatcca ccttaaataa attaaaggta ccaaatctcg      1680
     ttttaactcc ttctagtcaa agagttacct cctttactgg agatcgtgtt ccgattgcag      1740
     gtgaaattga actcgaatgc agtttgaaac tgaacaacat agtcaagaag ttcaaaattt      1800
     attttattgt tgctgatatc aactgtccta ccgtcctggg acttgaaact tgctctagtc      1860
     taggtcttat caccagagtt ttttccgtcg aagctgaaac ccaattgggt acatcaaaat      1920
     ttcgtcttgc aactcctaaa aaggattgtt cttctgatga acttctgtcg cagtttcgtc      1980
     acctctttga gggtcttggt tgtctgcctg gtgaatgcca catatacctt gatactaaag      2040
     ttcatcccaa agtagatcca cctcgtaagg taccttttaa acttcatgac cgtctcaaac      2100
     atgaattaga tgctatggaa aaatcaggtg tcattaaaaa agtgacctat cctacttcat      2160
     gggttagttc tctgttgctt gttgaaaaga aaacaggaaa actaagagtg tgcttagatc      2220
     cgcgcaactt aaaccaagcg ttaaaacgtt cgcattatcc tattccaact ttagacataa      2280
     ttagatctaa attagctggt gccaaacatt tctccactct agacgcatcc agtggattct      2340
     ggcaaataaa actggatgaa gagagttctc gcatatgcac gtttaacacg ccctttggtc      2400
     gttactcttt tacacggctt ccattcggta tcaattgtgc tcctgagatt tttcacagca      2460
     ggatgattga tatatttggt gacattcctg gcgtcattgt ttattttgat gatttgttga      2520
     tttttggaag aactaaggaa gaacatgatc gtcggttgag acaagtcttc cttagagctg      2580
     caaaagtcca ccttaaattc aatatggaga aaagtcgcat ttgtcaaagc aaagtccgat      2640
     actatggtca aatcatcagc gctgatggcg tagccgctga cgataacaaa gtccaagcta      2700
     taacaaaaat ggtgtcgcca tcttgtaaaa aagatcttca acgcttccta ggtctcgtca      2760
     attacctagg ccaatacatt cctaacctag ccaaggaaac tgaaggtttt aggaatcttt      2820
     tgaagaaaga tgctttgtgg gaatggtcat ctgaacatga agcaattttt tgtcgtctta      2880
     aacaaatttt gtgttctgca cctgttttag cacatttcga cccaaatcaa ccaatcactc      2940
     tgtcagtaga tgcttctcaa tcagcagtcg gagcggttct tttacaaaac ggacatcctg      3000
     tctcgtatgc atccaaaaca ttcaccgagt ctcaaaaacg gatggctcaa atagaaaagg      3060
     aatgttacgc tattgtcttc ggttgtctta aatttcatca atacatctat gcccaagatg      3120
     tcctcgtaga aactgatcac agtccgcttg ttacactctt caaaaaaccg ttagctgata      3180
     cacctgccag gttacaacga atgatgctga aacttcaacc ctatacttta aacgtcacct      3240
     acaagaaagg taaggaaatg tatattgccg ataccctttc tcgtgctgcg ttaccagata      3300
     tgtcagaaga tgaactcgat cgtgacatca tcatacatgt gaatgctctg aattcaaatc      3360
     tgcctgtctc cgaagaaaaa cgtgactggt taaaaaatgc caccaaaaat gatgaaactc      3420
     ttcaacttct ggcagattac tatcaaaatg gctggcctga aaagaaatca gatgtcctcc      3480
     tttcagctca accattttgg aactatcgtg aactaattca ttcagtcgat ggtctcatgt      3540
     taaaaaacgc aagtatcatt attcctcaaa atcttcgaaa agaaattcta aagatcatcc      3600
     atcaaggaca tttaggtatt gctagatcaa aatcttttgc aagaggtatt gtgttttggc      3660
     caaacatgaa ccaagacatt gaaaatgtag ttaaatcatg tcctacatgt ctcagtcatc      3720
     gatctgacaa tccgccagaa ccgttacttc cgcacaaagt tccaaaattg ccttgggaaa      3780
     aagttggtgt agacttactt gaattcgatg gaaaaaagta tttaatcatc gaagactatt      3840
     actcaaactt ctttgaggtt gaacctttag tgtcttcaat cgctcctaaa gtcatcgttg      3900
     cgttgaaaac aaattttgct cgtcatggga ttcctgttga aatgatttcc gataatggac      3960
     ctcctttcaa ttctcaagaa atttttgact tcactcgtaa ctggggaata actcatactt      4020
     tctctagtcc atatttgtct agatcaaatg gacttgtaga atctggcgtt aagattttca      4080
     agacaatcct gtcaaaatgt aaaatgtcta atgaagatcc tttcttagca ttgctcaact      4140
     atagaacaac atcaagaaat aatattgagt ctcctgcaaa acttttaatg tcaagatcac      4200
     tccgtactct gttaccaacg actgaaaaac atcttaaacc taaatcagta agtttcaatc      4260
     ttcatcaaca gaataaagta aaaaatcagt ctacgatgaa attctattat gatcgtcaaa      4320
     cccaaccaaa gtcaattctt aaaccaggtg atccaatcta cttcaagaaa gatcccaaat      4380
     cattatggat tccagggaaa atcatctcgc agcatcaaca acccagatca tataatgtcc      4440
     agtcagccga taatgtcaat taccgtcgaa atcgacagca cattatctct actccatccc      4500
     aatcagtgac agttcctcct gctcaagatg ttccttcgaa tccaatcaat tcttcaaatc      4560
     cgtctggtga acctgctgat ccgaatagcc gaaataatca acctcctatt cttcgtagat      4620
     caaatagaga aataagacct cctcgcagac tcgtcgattc attcatctag tgactcattc      4680
     atcctataaa tttgtatgtg atatttcctt tttttttcaa tttttattat gtcttgtaaa      4740
     tgtctagtct gacaaacata gataaaccta ttggctgtga taaaattaaa ttattttcct      4800
     attttgtgcg aatcattatg tacttaaatt tttactcgca ctcaactcac agttcttgaa      4860
     gcaaatttgt acgcttttaa atcattttaa attttaactc atcattttat tttaatcatt      4920
     taacgtgtca actatctatc cttcaattaa ttgttttatt atgacaatcg ctcatgcata      4980
     ggtttgcttt aacttttcta tgtgtcaaac tctctatgcc ctatgcatga tattttaaaa      5040
     aaaaaaaaaa aaaagggggg a                                                5061
//
ID   Gypsy-44_TrVa-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-44_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 348-348 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 224 BP; 53 A; 56 C; 36 G; 79 T; 0 other;
     tgttatgtat ccatcctagc tccttattta ttctgtctgc cttccgcggc agcactgtta        60
     gtttactatt aattccgtct gccacctgcg gcagcattgt aattgcctag ctggtcgggg       120
     cctgtcgtag ccggcatcaa tatattttat catcttatca tgtacactta acatgtctcg       180
     ctcatttata attatttatt aattgccaac cacaagacaa aaca                        224
//
ID   Gypsy-450_AA-I repbase;    DNA;    INV; 5294 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.07, Created)
DT   30-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-450_;
KW   Gypsy-450_AA-I; Gypsy-450_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5294
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5294
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2054-2054 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5294 BP; 1697 A; 839 C; 1191 G; 1567 T; 0 other;
     aagtggcgac gaattggaaa aaaagcttag aataaaagaa cgtgcttagc agattttttg        60
     gtgactttct aagcagtggt agcgtgctgt aagattgagc cgatttctta aaggttgtgt       120
     aaagttgcag cttgagcagc atatcgctgt gtgaagaatt ttgtacaaat tctaaaaaac       180
     gtggtgtggc ttgatacagt gctcggcgtg gtccgccatt ggtatcgatt gctagccgta       240
     ttaagtggcc tgtgccctgc tttccagttc aaaaaaaaaa aaaaaaaaaa attattggtg       300
     catagattaa gtgtagcagg gttagccctt gtgtgcatta aaaacgtgat taggcgccat       360
     ttgggattat tggctggata ggcaagtgtg gggtaccggt gaaagccatt ttgaagggca       420
     ttgttcgatt tcaatcagaa taaacgtatg ttaaaacaat aggtgagaag tgggctgctt       480
     aagttataaa gctagcgtgt tagacggtgt gagcctacta tcgagactgg tggtgagaag       540
     tttgtagtga gatagtcggt gagtggttac aaggccggtg atgagctatg agactactgt       600
     gagtgactag aacgactgaa taagtgaaaa tcggcagtgt ggagaaaaag cattcgtgtg       660
     caagagtgct ggaaaagctg cggtgagcta ctggtgagcg aactacttcg gagtggcggt       720
     gagctactag taaatgaaca acttcggagc aacggcagtt gaggacatca tcccgtagtt       780
     tgagagcata catacatcct tcgttcgtga gaaaaagtta aaaggtcacg tgagtctttc       840
     ctagttttat tccaattttt ttaatattat ttaggtgttt tttctaattt tttatcgcag       900
     taatcatgac tactcttatt ggtactgttg atcattacgt acggggttcg agttttagta       960
     aatatatgga taggatgaaa attttgtatc aattgaacaa tattccggag gccatgaaaa      1020
     agaacttgtt tataactctc agtggcccca caatatttga tgaaataagt ttgatttatc      1080
     cgggtgtaga tattatgacg attgattaca atgaaatgat taataaatta aaagaaagat      1140
     tggataagac cactcctaat atgatgaaca gacacaagtt tcactcgagg gtacagggca      1200
     tagatgaacc agccgaaaat tacgttctag cattgaaact actagcaagt gagtgcggtt      1260
     ttggtgcgca caaagacgaa gcaataaagg ataaaattat atttgggttg cgcgatcagg      1320
     agttaaagca acagcttctt atgaaagatg gcatgtcgtt aaatgaggtg gaagagttgg      1380
     ttgttcgtag tgagctggcc aaacttagag ccaaggaatt aagtttaaca gacgatggtc      1440
     cgaaaagtat caattcagtt aaatacaggt tgggaaacgt agaacaaggt ggtgatgtag      1500
     gacattccgc aaggcagttt acgagagatt atggacgcag gcaacgtagt cgtagtagaa      1560
     gtatggagag aggacgcagt tcattgcctt acagtggtaa tcggtataat ggaaacagat      1620
     ataggcaaga gcagagagac tttagagagt atcgcgatcg tcgggaagac aacgttcatt      1680
     atggcgttat ttgtaatttt tgcaaaaggc gtggccatgt taaacgcaat tgttttaaac      1740
     tcatgaatcg tagatcggtt aactttgtag aaaacgaaga aaaggaagta gagcattacg      1800
     attttaagcg gttgagtatc caggattcgg aagatgagac agattatcct tgcatgatga      1860
     tttcagcaaa agagcgtttc agtgagccat gtgtagttaa cgttttggtg aatgatgtac      1920
     aattgaaaat ggaaatagac tgtggtgcag ctgtatcagt cataagtctg aatctttata      1980
     ggaaatgctt cgataattta ccagttaaaa aatgcaacag tcgtttggta gtagtcaatg      2040
     gtgaacgttt aggaattttt ggaaaaattg aggcttatgt agtggtggat aataacaaaa      2100
     aacgtgccaa tttagtcata attgatggac caggaaagtt tgttccgctg tttggtcgtg      2160
     attggatgga tttattttac cctcattgga ggaaaacttt taggagcgcc atgagcatta      2220
     actcattgga ggaaaaccgg caggaaatta agggtaatgt taattctgac attcaatcac      2280
     gttttcctaa ggtatttgat ggagattttt caaacccaat attaggttat gaggcagacc      2340
     ttgttctaaa ggaggacagg cccatattcc gtaaggcata cgacgtacct ttcaagctga      2400
     gggaaattgt agtggaacat ttggattcct tggaacaaca aaatgttata tctcctatcc      2460
     aggtcagtga atgggcttcc ccaattgtga tagttttaaa gaaaaataat gatattcgaa      2520
     tggttataga ctgcaaagtg tctataaata aatgcatcat acccacaacg tatcctttac      2580
     cattagcaca ggacagtttt gcgtccttat caggctgtaa atggttttgc tgtctcgatt      2640
     tgatgggggc gtacacgcaa ttacgattat cagagcgatc aagaaaattt gttgtcataa      2700
     atactattaa gggtctgtac gtgtataacc gcctaccaca gggcgcttcg tcaagcgtgt      2760
     caatatttca aagagtgatg gacaatattt tgattgggct caaacatgtt tgtgtttatc      2820
     ttgacgatgt cctaatagcg ggcagaactc tagaggaatg ccaaaataat ttatttttag      2880
     tacttcaaag actgcaggat gcaaatgtaa aagttaattt aaagaagtgt atattgtttg      2940
     tacaatcact cccatatttg ggccatttat taaccgataa gggaatactg ccttctcctg      3000
     aaaaattact gactgtacaa gaagccaaaa ttcccaaaga tgtttcagaa ctgaaggctt      3060
     tcttaggctt aatcaattac tatggacgat ttgtcccaca tttagcaata aaactgaatt      3120
     gtttgtatgc gttattgaaa aaaggcaata aatttgtttg ggatgataag tgccagagag      3180
     cttttcagga tagtaaaact gcattgatta atgccaatat gctggaattt tacgatccac      3240
     ataaacccat catagtagtt tccgacgctt gcaattacgg tttgggagat gttctcgctc      3300
     atttggtaga tggtaaagaa aaaccaataa gttttgtgtc tttttctcta aatgctgcac      3360
     agaagtcata cccgattctg cacttagaag cattagcgtt gatctgtacc gtaaagaaat      3420
     ttcataaatt tttgtttggt caaaagttta caatatacac ggaccacaaa cctcttttgg      3480
     ggattttcgg taaagaaggg aaacatcaat tatacgtaac tagattgcag cgttatgtta      3540
     tggaaatgtc aatttattaa ttcgacattt tctataggcc ttcatctcaa atgggcaacg      3600
     ctgatttttg ttctaggttt cctttggagc aaccggttcc aaagagtatt gacagcgggc      3660
     ttatcaataa cataaatttg ttcaacaatt ttcctttgga tttttctcaa atcgctaaag      3720
     aaagtatgca ggaccagttt ctttcaaaag tagcggagta tatttctaaa ggttggccac      3780
     aaagagtgga taaaggttgg cagccggttt attccgtgag gcatgagttt gaaattgtgg      3840
     acggttgcat tttatataaa gatcgagttt taataccttt gtcattaaga aaccccatgt      3900
     taaagcttct gcatgcaaac cacagtggag tagtaaaaat gaagcaacta gctcgcagta      3960
     gtctgttttg gtttgggttg aacacagata ttgagaattt tgtgaaatgt tgtcaagcat      4020
     gccttaaaac agcagtggtt cccaaaccgg aatgtaacac ttcttggata cctactacgc      4080
     gcccgtttag ccgtattcac gctgattttt tctattttga ttccaaaaca tatttgctag      4140
     taatagacag ttacacaaaa tggctagaaa ttgaattaat gaaatatggg acagaggcta      4200
     gtaacgtcat aaaaaaattt acagctattt tcgccagatt cggacttcca gatgtgttgg      4260
     tcactgatgg aggacctccg ttcaattcta atcttttcat aactttcatg gaaaaacagg      4320
     gaacaagagt aatgaaaagt cctccataaa atcccagcag caatggacag gccgagcgaa      4380
     tggttagggt ggcaaaggat gtgttcaaga agtttatgtt agacccggag ataagatcgc      4440
     tagatgtgga agatcgtata acatattttt taatgaatta tagaaacact tgcaattcag      4500
     atgacaaatt cccatcagag aaaatgctaa gttttaaacc gaaaaccttg attgatctaa      4560
     tcaatccaag aaaacaatat aaaaattatc tagaaccttt tcctggaaag gaaaatgttt      4620
     atctagatac ttgctgtacg cccactcggg atccttttct taatttggtt ttgggtgaca      4680
     aaatcttata taagaataat catacacgct cattagaaaa atggattttc gcccgttatg      4740
     tcaaaaggat ctcaccgaat gtttttcgta tctcttttga cagccacact atcaacgcgc      4800
     atcggaatca gctcaaactg ttgaaatcgc cagcaactta ttcgagggta caaataccag      4860
     ttcaaagttc caagaggcga agaacgagta gcatttctga tgaggaagaa ttccatggtt      4920
     ttccggatgt tcccatggtt cccgaaaaca atggaaatga tggtagacgt ttcaaaatag      4980
     cgagacgtag tcccatccgt acacgcagtc atacaagatc aaacgaggat gcggagcttc      5040
     aaagattctg atggaggtga tggatcacga ccttttcgaa tgtatttaaa aagaaaaaga      5100
     aagagaaaac aatttgctta tgtgttaccg ctatttagta gttgcttgta tagcgttcga      5160
     atcaacaata gatattgaat catagaagta agctaaacat gaaaaatatg tttgatctaa      5220
     tttaagtatc cattaattaa aaaaaatcaa gattgttaaa tcgttcgata tttgctcact      5280
     aaaggggaaa gaac                                                        5294
//
ID   Gypsy-450_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.07, Created)
DT   30-JAN-2019 (Rel. 25.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-450_;
KW   Gypsy-450_AA-I; Gypsy-450_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(7), 2083-2083 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 201 BP; 66 A; 33 C; 35 G; 67 T; 0 other;
     tgttatgttc gactttaaga tcaaaaccct cagattatat caaatgaact ttattatagt        60
     aatcacgtga gtgacctcga aattatagct gtaaggtata aagaatgaat aaacccaacg       120
     gttcgatctc ttgtatcgtg actttcaagc gagttggacg ttttatttaa acctctccga       180
     agattagttt ctggatataa a                                                 201
//
ID   Gypsy-451_AA-I repbase;    DNA;    INV; 4973 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.10, Created)
DT   30-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-451_;
KW   Gypsy-451_AA-I; Gypsy-451_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4973
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4973
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3031-3031 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4973 BP; 1532 A; 843 C; 1107 G; 1491 T; 0 other;
     gtggcgacga ggaaaacggc gtccgaaagt tggattttcg gcgcgcgatc agtgcaacag        60
     ctcgggcggc agccatcacg gtgagatttt tttcccatca cccgcgggac ggaggattag       120
     gctggtccaa aattgactgg agcggtggta agaacaaagt aaaactaaat actcggaaaa       180
     gtgaaatcaa attccttttt cgttggtgtt ttgacggtaa gaaagcgtaa ttgtatttta       240
     accgccattt gccttgctgg cgtcggtttt ggttaaacaa tagtaacaca attaacataa       300
     ttgaaagcct ttattgtttt cagggaacaa ttattttaca aattattaag agtgtttttc       360
     ttttactcct agtaggcatc tgcgcagtga attgtgcggc gtcggtagct ggctttggcg       420
     ggaaatttcc ggctgttcct ttatcgctgg gtggcgagtt gcaagccttc cttccgcttg       480
     ttggctggtg cgttggtgag gttacgttgt gatcgggtga gtgtaatcat tcttttatat       540
     ctttttcgac tcagttgtga agattaggcc ggtccaagtt tatttttttt ttgaatttgc       600
     attttaattt tgtgaacttt ttgtaaaatt taattttttt cgttgttgct tagatattgg       660
     caaatatgtc ctatgtagtg gcccccaata ttgaacccta ccgtaaggga caatcgtttg       720
     cttcctgggt caggcgatta gctttccatt tccgggtgaa cagggtcaac gaaaatgata       780
     agaaagacca aatgttctta ttaggaggag actatttgtt cagtatggct gaaaagctct       840
     atccgacaga ggcactgatg gacgaagtgt cctacgaagt gctaatccaa aagcttaagg       900
     agaggctcga taaaacagac tcagttctac tccagcggta caattttggt actaaggtac       960
     aacaagctgg tgagtcggct agcgatttta tcttttcact gaagctccaa gcagaacact      1020
     gcgagttcgg tgaccaaaag aatcgactca ttttggatcg cattcttgtt ggcttaacgg      1080
     ataataatct taagcatcgt cttctcactg aggacagtgc aaagtttacg ctggagcaag      1140
     cggagaagat tattgccacc tgggaaatgg cggcgaccca tacaaaagct ttggcgaaca      1200
     acgaagatgt cggcttggta gcttctttaa acacaagata tcctttgact ggaggaagag      1260
     gcgcggtcgt tcagcgaatg aaggaggcag cacaaggttt tcgcggttcg gtgaaaagcc      1320
     gacttggtgt gcgaccggat attcgaccag cggaggatcg ttattataat tcccggaaaa      1380
     actcaaattt tcagcaagtc aggtatcgag attcatctgc tggacctgct catcggaggt      1440
     tcaaccgaga caacgatcaa tggcccttgg atcagcgcta ctgtgacttc tgcaaacgca      1500
     gtggacacgt acgcagaaaa tgctacaagc tgaaaaatga gaggaacagc gaagtcaacc      1560
     gtatcgatgc ccaggaagga agcagtacag tcagtttggc cgagcgactg gataggttga      1620
     ggtcggtgaa ctgggatacg gacgaaaatg attcaggtga tttacaatgt atgcatgtta      1680
     cttcaatcaa taagataagc gatccctgtt tattgaatgt gtctattgag aacaatattg      1740
     tacagatgga ggtggacagt ggttcttctg ttacagtaat gggcaaaaat ttatttactt      1800
     ccaaatttgg ccttcctcta gtaaaaagtt ctaaacaact gattgttata aatggttcca      1860
     gattaaaggt gtctggggaa gttggggtta aggttaaata caatggtaag gaagctaatt      1920
     taacactttt agtacttgat tgtgattacc agtttattcc tttgctgggc agaccgtggt      1980
     tggatgagtt ctttcccaac tggagaattt tttttggtaa tttgatgcca gtgaataata      2040
     tttcagtgaa ggaacatgat gcactaattg cagatattaa gctgaatttt tctgacgtat      2100
     ttgtcaagaa tttctctaag cctataaaac attttgaagc cgatttggtt ctgaaaagtg      2160
     atattcctat ttttaagaag gcttacgacg ttccttatcg tttgagggag aaagttttaa      2220
     attatttgga caaattagaa gcagaaaaag tgataactcc tattcaaacc agtgagtggg      2280
     catcacctgt agttgtagta atgaagaaaa ataatgacat acgactagta attgactgca      2340
     aggtctcgat taataaattt atcataccaa atacttaccc attacctgtt gctcaggatc      2400
     ttttcgctca attggcggga tgtacagttt tttgtgctct tgatttagag ggcgcttata      2460
     cacagctatc attatctgaa cgatcaagaa aattcatggt aattaacaca attaaaggac      2520
     tttttaccta taatagattg ccacagggag cttcctctag tgcatctata tttcagcagg      2580
     ttatggatca agtattgcat ggtattgata acgtttgcgt ctatttggat gatgtgctta      2640
     ttgcaggaaa agacttgaag gattgcaaga aaaaacttta catggtgcta gatagattgt      2700
     ctaaagcaaa tatcaaaatt aattgggaca aatgcaggtt ttttgtgact gaactagagt      2760
     atcttggtca tatgattagt agcaaaggtt taactccttg ctcaagcaaa attgcaacta      2820
     taagagaagc taaaattcca acaaatgtga ctgaattgaa gtcttatttg ggacttatca      2880
     attattataa caaatttatc ccaaatttgt cttcaaaatt gtatcatttg tacaatttat      2940
     tgaaaaacaa tgtcaagttt gaatggaaca gtaattgtaa tgaagcattt gagaattcta      3000
     aaaagttatt actagaaact gattttcttg aattttatga cccggagaaa cctattgttg      3060
     ttgtcacaga tgcatctggc tatggtttgg gaggagtaat tgctcatgta attgacgagg      3120
     ttgagaaacc aatatgtttc acgtcttttt cgttaaatgc agcacaaaag aaatacccca      3180
     tattacattt agaagcactt gcacttgttt gcacaattaa gaaattccat aaatatttgt      3240
     atggtcaaaa atttacagtt tttaccgacc acaaaccttt agttgggatt ttcggtaaag      3300
     agggcaaaca ttcaatattt gtgacaagaa ttcaacgcta cattttagaa ctttcggtgt      3360
     atgatttcga cattcagtac aggccttctg caaaaatggg taatgcggat ttttgttcgc      3420
     gatttccatt agaagtgtca gttcccagtg aatatgatca agaatttatt aaaagcataa      3480
     attttgggga caacttgcct attgattttc tggttattgc tagagagact aagaaggatg      3540
     actgtttaca gaaaatcata gattgtatac accatggttg gccaaagaag atagacagac      3600
     aatttgctga tgtttatacc aatcgacagg aaatagagat tattgaagac tgcttgttat      3660
     ttcaagacag agtcgtaata ccacaggtaa tgcaaaaaga gattctaaaa cttttacatg      3720
     gcaaccatgc gggtatcgtc aaaatgaaaa gactggcgag aagaacagtg tactggtttg      3780
     gaataaacac acatattgaa aattttgttg ctgcttgtga cgtttgtgca agtatggcaa      3840
     tagtaccaaa acaaaacatt acttcaaaat ggatacctac cacgagacca tttagcagaa      3900
     tacacattga tttcttccat tttgaacatc gtaccttctt attgatggtg gatagtttct      3960
     ctaaatgggt ggaggtagaa tggatgagaa aaggtacaaa ctgttcagag gtattgacga      4020
     aactcattga attttttgct cgttttggat taccggacgt catagtgtcg gacaatggtc      4080
     ctcctttcaa ctcacattct ttcaaaagtt tccttcaaag acaaggtata aaggttttga      4140
     acagtcctcc atataatcct gctagtaatg gccaggcgga gagacttgta agaacagtta      4200
     aagacgtact caagaaattc ttattagaac ctggaatgtt ggagttgagt ttggaagatc      4260
     agatcaactt gtttctattc aattatagaa ataacaattt gacgatggaa ggtaattttc      4320
     cttctgagaa aatctttacg tatactccta agatgttaat cgatttggtt aaccctaaga      4380
     aacattataa gcagatgctt gtaccacaat cccccaatga tgaggcaaat actagtcaaa      4440
     atgttgcaag ttatcgaaca gatccgttag attctctgat accaggggac attgtgtggt      4500
     acaagcataa cattccacgt gtacgcgaaa aatggataaa ggcatccttt ctaaaacgat      4560
     tttctaaaaa cgtattgcag atcatggttg gaaacgaggc gacaactacc gcacatccaa      4620
     cacaaatcag gctcgttaag gatggacgag gtctacggga ccagccaaga cgtacagtgc      4680
     gagtagttga cactggtcgg tcgttgccga ctgtagccga acccgaaaga ccatctgagg      4740
     agatcgatgt ctggcaaata ccggatcaga gtgttagtga gttaagaaag gatcaaaatg      4800
     aaatagtaga gcgtatgaat aggaaaagaa aatttccgtc ggaaccggta gcgcttactg      4860
     gcctaccccg gcgttcaaaa agaattagga agtctagagt agaaagtgaa ttcgaatatt      4920
     attaaagtta ttgttattga attactgttc aatcttttat aagaaggaag agc             4973
//
ID   Gypsy-451_AA-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 25.10, Created)
DT   30-JAN-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-451_;
KW   Gypsy-451_AA-I; Gypsy-451_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-307
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-307
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3032-3032 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 307 BP; 97 A; 69 C; 51 G; 90 T; 0 other;
     tgatgtatat cgaaattata tactttgtat aaaaacattt atgagtgtat tcagcacccc        60
     ataaactatt cagcagaaac tggcaacact gctgtcgaac tatatttaca ataaacaagc       120
     ccaaagaggc tctcttcagt tttacacctc aaacgtacaa gtcgtgttta ttcccaagtg       180
     agaaaacccc caagttcccc ctgaattagt tgagtgataa tctcccagtt tcggtttgcc       240
     gttgtccgta gaagtgagta aaagttacac cccaatccgg tctggttccg gaacttaaaa       300
     catttta                                                                 307
//
ID   Gypsy-452B_AA-LTR repbase;    DNA;    INV; 524 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-452B_;
KW   Gypsy-452B_AA-I; Gypsy-452B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-524
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-524
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3107-3107 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 524 BP; 181 A; 85 C; 124 G; 134 T; 0 other;
     tgtagtgatc agaagcgatc atatattgtc gcgcgcccac caaatcggaa cgcgcgtgtg        60
     ggacagattt tctgtcggat ccataatatg gaaaattaaa aagttattat agaggttaaa       120
     ttaaagcggt agtaaaatgt tattcttata ataaataata attattgact cagattgttg       180
     cattgtctga gatatttgcg taactgtatt atgttataaa atgcaagcat cactggcaac       240
     acagtaattg agaaatgaaa ttattcgaga gaaatttcat actcataaaa aagcgaagca       300
     aaggctgaga agcttcgatt ctggaagaag agagagagag atacaccgag aaagagaaag       360
     agagcggaat ccaatctgaa attggtttgt cgtggtctca cgctattaga gaggcattct       420
     atagtcagat tttgcgacga tcggacgctt gacgcgcaaa tagttcccgg accagaagcg       480
     gaagaatttc ggccgatcca aaatggatgg acgcggtcac caca                        524
//
ID   Gypsy-452_AA-I repbase;    DNA;    INV; 3452 BP.
XX
AC   .
XX
DT   03-APR-2019 (Rel. 25.10, Created)
DT   03-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-452_;
KW   Gypsy-452_AA-I; Gypsy-452_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3452
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3452
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3452 BP; 1134 A; 621 C; 772 G; 925 T; 0 other;
     atggcgcagt agataggtga gtatttcaac gaaatggaaa ttaatggttt tatgcatacc        60
     gtgtggccga caggcgccag cggaaaatgg atttttttcg gcaagatggt agccattttg       120
     gaacacgctg ggatcagatt aaatatttaa tcttgaccct aaatgacaat tagaaaatgg       180
     ccggtaggtg cctgcaaatt ttaagtttct aaaatattga agcttgcgaa aggtcaagca       240
     tctgtaaaag attgagatag aagttaaaga gaatggatga taagttccgg tgcagtgaaa       300
     ttacagcaca aattgtgagc ttgcggatgg tcaagcataa gcagatatgg tagccatttt       360
     gaaaagaaaa tgtgctagtg acacatacaa tctgttaact atttttaaca taatctaact       420
     ctctgaaaca atagtgcttg cgcaaggtca agctcctaaa aagattgaga taacagataa       480
     aataaattgg atgataagtt cccgtgaggt gcaatttcag taaaaacaat atatatatat       540
     atatatataa tttgagcttg cggatggcca ggcgtgagca gatatggtag ccattttgaa       600
     acggaaatgt gctagttaca caaaaatctg tttaataata tttacctgat caaactttct       660
     gaaataatgc ggcttgcgaa aggtcaagct tttgtaaaag attgaaatag aaaataaaat       720
     gaattggatg ataagttcct gagaagggaa atttcagcaa aaaaattttg gacttgcgga       780
     tggtcaagca tgagcagata tgatagccat tttgaaaaga aaataggcta gtaatttaaa       840
     caatcagtaa catatttttt acaaaatcaa ttggtcaaat gtttgggata tactcataga       900
     aaatggccgg taggcgcctc tgaaacctca tattggcata acattgtgtg gcttgtaaat       960
     aatcaagcgc cggcagttat cgtcaatggc cgaatggcca tggaacaaaa aaaaaaaaga      1020
     aaaaaaaaaa ctctgactcg cgaatggcat gagatgaaat acagatgtat gtttgctatg      1080
     gtaatgtaag tcaattgaga agttcgaata tttgaatgtt gattggaaat actctattta      1140
     gaaaatcata taagtgtctt ttaaagacta taattctgtt ccttgtaata tagggttcac      1200
     gcgtatcaag tggtattttc catctaatat ttggttcata acgtgaaagc atggaaaggc      1260
     tttatgcacg atagctaatt ttaatcgata attctcaaca cagcgaagaa gcagcgtaga      1320
     aagctagctt gggcttaatt ggttgcttga ctttgaaaag ttataatggc tcatatgaca      1380
     tagatcatta gaaacagcag ttaactcgct tagtgttata cgattgcttt tctaattgca      1440
     aaatttcaat tcgatttaca gcaaaaaacc gtcgaaaaag ttcaaagcga agcatacaat      1500
     tccgtatgct ccaatcaact acgaagaaaa ctcggaagga agctctcttg actctacgtc      1560
     agaagagcag agtgcacaag tcagagctct aacgcaggag gttgaagcag gtaaagcgct      1620
     tattgagcaa cttcagcagc aactaaggtc tctcgaagaa aaagaagccg tccaagcacc      1680
     taatcatgct ccatccgaga gtgaaggtag cagcagcgaa ttcgttcaag ccgtaggtcc      1740
     ctcgagtact cagcgaccga cagcatcact agctaacctg gaagagtcaa gattcatgtc      1800
     atccgtgaac cattatctag caggaccttg ccagagggac cctgggaagt cttcaaatag      1860
     atttcctttc aatgccaaac tacggttctg gagaatttct agttaccgtt gatacttact      1920
     cacgacatat ttcggttatt gaaatgagat ccattaatgc agaatgtacg aacgcagcgc      1980
     tttgtgaaat attcaaaacc tggggttacc cgcttgtcat tcagagcgac aatggcccac      2040
     cctttcaaag ctcgaacttc atttcgtttt gggaggacaa aggagtgaag gtgagaaagt      2100
     cgatcccgtt gtgcccacaa accaatggga ttgtagagcg ccaaaaccaa gggattatca      2160
     aggccttggc ggcttcaaga atagaaggag gaaactggcg agaagcgcta caaaaatacg      2220
     tacacaatca caataacctc gtcccacacg caagactcgg catcacacca ttcgaacttc      2280
     tcgtaggatg gaggtaccgc ggtacgttcc ctagtctatg gggtccatcg aaatcgaaag      2340
     agcttgaccg aacagaagtg cgagaacgag acgctgaggc taagctgacg agcactaaat      2400
     atgcggatag aattcatcat gccagagatt ctgctattaa cgtaggggat attgtgttgc      2460
     tcgctcaata tagaaaaggc aaaacagatc ccaccttcgc accagagaga ttcagagtag      2520
     tagcgagaag tggggcaaaa gtggtcataa tcagcaaagg tggagttcag tatgcacgga      2580
     atatccagga cgtcaaaatt gcaccctcac cggtagcttt gaacgacggg aacaacaacg      2640
     gaaattttgg aagtagtgag ctatctttgg aggataacga ggatatgcct ggtcgcaatt      2700
     cgttggaagc aaataccgag caggaagagc aagagagaaa ttcaattgga tcaccagcga      2760
     aaaagttgag ggtaaggcgc gatatcaaga aaccggcacg gttcgatgac aagtacgtat      2820
     acaatgtgtt cttctgagaa aagacgatta aggtataatt agaaataaaa agtgaatttc      2880
     agtgagtaca aaacccctcg ttaccttaat ttttcttccc accgcaagaa agtacgatgt      2940
     tccttacaat aacggtaatt gttggtattt ggttgatcac atttaacaaa ttttgttggc      3000
     atactctctt catgatagtt tcgttctgca tgaatttcgt ttggcggctt gagcagtaca      3060
     aggaatcgag tcgctaattt cctggctgat actgagcgac gtgaaacagc ttcctaatcg      3120
     atgcatactg gattctttgc ggcggtttac ctccttcgtc ctttatgcag ataaatactt      3180
     tttttcgtag cagaaattaa gaaaatttaa atgtttctgt tgactaatcg caagtgtttt      3240
     ttccgtaaaa tgcgaaacgt ccaattcgat ggaagatgcg aaagctgtca gttgtgcgtc      3300
     acacgcgcac acacgctgcg atgcgtgagc gtgaccatca cattgtcact caatgacggt      3360
     tcatgattta cacggaaaac cttttgttca ttattatatt tttttaatgc gtctttaatg      3420
     aaattttttg ttagagtaca ggtggaatga ga                                    3452
//
ID   Gypsy-452_AA-LTR repbase;    DNA;    INV; 513 BP.
XX
AC   .
XX
DT   03-APR-2019 (Rel. 25.10, Created)
DT   03-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-452_;
KW   Gypsy-452_AA-I; Gypsy-452_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-513
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-513
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 2972-2972 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 513 BP; 171 A; 82 C; 126 G; 134 T; 0 other;
     tgtagtgatc agaagcgatt atatatggaa gattaaaatt ttattataga ggtacaatta        60
     aagcggtagt aaaatgttat tcttataata aataataatt attgactcag attgttgcgt       120
     tgtctgagat atttgcgtaa ctgtattatg ttaaaaatgc aagcatcact ggcaacacag       180
     taattgagaa atgaaattag tcgagagaaa tttcatactc atataagagc ggagcaaagg       240
     ctgagaagct tcgtttctgg aagaacgcta gaaagagaga gatacaccga gaaagagaaa       300
     gagagcggaa tccaatctga aattggtttg tcgtggcctc acgctattag agagtcattc       360
     tttagacgga ttttgcgacg atcggacgct tgacgcgcaa attgttccag gagcagaagc       420
     tgaggaattt cgaccgcttg acgcgctatt agttcccgga ccagaagcgg aggaatttcg       480
     gccgatccaa aatggatgga cgcggtcacc aca                                    513
//
ID   Gypsy-453_AA-I repbase;    DNA;    INV; 6730 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-453_;
KW   Gypsy-453_AA-I; Gypsy-453_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6730
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6730
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3180-3180 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           501..1613
FT                 /product="Gypsy-453_AA-I_1p"
FT                 /translation="MPKVDRIKFFRRAKANKTADTHISESESDTDTDEMQE
FT                 IVDKMSEMMAAIAMLQQKQEQMETHAPGALGAHNASNIGTMGDLFKIPDPI
FT                 KSIPSYEGNRKQLQSWLTTAESTLNRFKPLVSDQIFEMYVTAVTNKITGKA
FT                 KDILCLAGNPQNFDEIKEILSAALGDRQELSTYKCQLWQNRMQEHMSIHKY
FT                 YNKTKEIVQNIKTIAKQNPKYQNHWDAINNFIDEDALAAFISGLRGNYFGH
FT                 AQAARPKDIEDAYAFLCKFKSQEITASNMGESSNRGNQNKSFGNQKPFKNT
FT                 QNNDQKSKFKPDSIFKKETETPEPMEIDPSLRSRLSFKKVVHNNETSQDPE
FT                 NSSDSDEEDEDESPEVNFCVTQQNKNPN"
FT   CDS           1565..4966
FT                 /product="Gypsy-453_AA-I_2p"
FT                 /translation="VAGSKFLCDTTKQKSKLNFLPYLQTNQLKLLIDTGAN
FT                 KNLIRPGILQNAKQINSTTIKNINGKHNVSRKGKLNLLGPNVPDQTFYEMN
FT                 FHTFFDGLIGSEFLAKTNATINYKKEEIRINKIIFPFKKYHLKKEKVYNHI
FT                 VTIQTINDGEWFVPKFTKLIDGLTLAPGLYTSKDQKSTVMIQSHNKKTPKY
FT                 IPEIAVTVNNFEVISPIPNVNNEALDKNDIEKLIRTDHLSAYEKSMLIDVI
FT                 LKHQETLLKTGEKLTATTAVKHNIITKDDQPIYTRSYRYPHHYKKDVDEQI
FT                 SEMLECGIIRHSLSPYSSPVWVVPKKTDASGKKKVRVVIDYRKLNEKTVDD
FT                 KYPIPQIEEILDNLGKSAYFTTLDLKSGFHQIEMNSKDIEKTAFSTGQGHF
FT                 EFTRMPFGLKNAPATFQRAMNSILADYIGIICFVYLDDIIIIGYNLQNHLE
FT                 NVSKILKRLADFNLKIQLDKCEFLKTETEFLGHVITPSGIKPNPDKIQQIL
FT                 EWKLPTTPKQIKQFLGLTGYYRRFIKDYSKITKPLTKYLKKEMEININDKD
FT                 YVESFSKLKTIISSDQVLAYPNFELPFILTTDASNYALGAVLSQKQDGLER
FT                 PIAFASRTLNNTECNYCTTEKEALAIIWAINKFKPYLCGNKFTLITDHKPL
FT                 TYIKNSKKNLKLINWSLELENYDYDVIYKSGKTNVVADALSRKIDANANEV
FT                 DEESTDTNHSADTSDDFFIHFTEKPINSYKNQIVFRNATFNSIITENPFPR
FT                 FRRVVICSTTYNKNNLAEWLKEYASDSQTAILAPESLLQLIQEVHREHFSI
FT                 INTHFVLTQNMVEDVTTVERQELLVQTEHERAHRGISEVEKKLKRSYFFPK
FT                 MIKCIRQIINTCTICAKHKYERRPYNIKISPRPIETKPFDRVHIDIFGIDK
FT                 NNYLTLICAFSKHLQIMEIASRNLTDIQNALAQYIRTFGAPNRIICDHEAA
FT                 FTSLQLKTFLANLGTEIEFASSSESNGQIEKTHSTIIELFNTNKHKFPEMQ
FT                 SSEIIAIVTALYNNTVHSATSFTPNEIVFNQRNNVNPQQIAEEATDIFKKV
FT                 SNFLNKATQKMKKYNSSKEDPPEFPVNSDVYVKKDTRKKLDNRFSETKCLQ
FT                 NNIRSIRIKRNVKRNKNKLKRLRKQN"
FT   CDS           5205..6701
FT                 /product="Gypsy-453_AA-I_3p"
FT                 /translation="MKLHILMILIVFKFIRIISQDLSITNMHEDSLLILKY
FT                 GTCRIQTGTINLIHPINITDLQITVDSLTNLAYSKIDNHLLELVKFKIKKM
FT                 YTNLAQLRPQKHFRTVRSLNAIGTGWKWISGSPDADDLQIINSTLADLVES
FT                 NNQQYKINEQLGNRLQLLTNAVNKIIERKNGNQILLNEVETITTIMNIDLI
FT                 DKILENIHDAILWTKVSVANNKFLSAQEMNTITNLMYDQGLQVELPDEALS
FT                 LVKPKVAVNKDTLLYILRIPQLDKEEANILELHPLINNDSVIQDSPPHLIR
FT                 RGNELFTTIKPEEYVQRSNYISKYSDECISKLILGKQSFCVTRRENKTETR
FT                 LITDNLIIVNNARLLKLQSNCGPDDRLLKGNFLISFSNCNITIGDIQFISA
FT                 DETIHLPILQGAMHGALTHHRLEEDSMSYINNQTIANRKLIDHVYLNQYAH
FT                 QFWNWSLLGGLSFSTTLIISLAIFTLIYYRKTVRYIITKFTKDNGDASTQN
FT                 RNA"
XX
SQ   Sequence 6730 BP; 2558 A; 1391 C; 1125 G; 1654 T; 2 other;
     ggcgcagccg gataggccag tgaagaagtg atttcagaag acaaacagtg gaaaagactg        60
     tcctaataaa acagttctaa agtggtaccc gttgaaaaac gtcgccagct gaaagcataa       120
     gctgctggat tgattcgagg accccccgct tctgcagcac acggagcacc gtcaacgttc       180
     ttcgccgagc ctccacacga caaaaccgtg agtacaattt tttttttcta agtgataaaa       240
     agtgttaccc acgtctgtta caccctccac aagtggaata gtgcatcagt aattgaaatt       300
     aacgagttct gagagaacgt tatttcatcg gacatacgag tacttagaga acgtgtgttc       360
     aattccttta ttctcttgtt cacaagtgca gtgcgctgat tgaaatttta tttcagtcgc       420
     ggaaggccgc taccaccgtg aatctcaaat aagcacagaa tcgcacaagc ggactgttgc       480
     ataaacctag cttgaggcga atgcctaagg tagaccgtat caaattcttt cgtagggcaa       540
     aagcaaataa aacagctgat acccacattt ccgaatcaga atcagacact gatacagacg       600
     agatgcaaga aatcgtcgac aaaatgtctg agatgatggc tgccatcgcc atgcttcagc       660
     agaagcaaga acagatggaa acccacgctc caggtgcact aggagcacat aacgcatcta       720
     atatcggaac aatgggagac ttatttaaaa tcccagatcc gataaaatct atccctagtt       780
     acgagggtaa tcgtaaacaa ttgcaatcat ggcttacgac ggcggagagt acactcaacc       840
     gctttaaacc tttagtaagt gaccaaattt ttgagatgta tgtgacagcc gtcactaata       900
     aaataacggg taaggcsaaa gacattttgt gtctcgccgg aaacccacaa aattttgacg       960
     aaataaaaga aattttatcg gccgcccttg gagaccgcca agagctttca acttataagt      1020
     gccaattgtg gcaaaacaga atgcaagaac acatgagcat tcataaatat tataacaaaa      1080
     ccaaggagat cgtgcaaaac attaagacaa tagcgaaaca aaatcccaag tatcaaaatc      1140
     attgggacgc gataaataac tttatagatg aagacgctct agccgccttc atatcgggac      1200
     tccgcggtaa ttatttcgga catgctcaag ccgcgcgacc caaagatatc gaagacgcat      1260
     atgcgttttt gtgcaaattc aaatcacaag aaatcacggc aagcaacatg ggagaaagtt      1320
     caaatagagg gaaccagaac aaatcctttg gaaaccagaa accattcaaa aatactcaaa      1380
     ataacgatca aaaatcaaaa tttaagcctg attcaatatt taagaaggaa acagaaactc      1440
     ccgaaccaat ggaaattgat ccttctttaa gaagcagatt gagcttcaaa aaagtggtcc      1500
     acaataatga aacttcccag gatccggaaa acagctcgga ttcggacgaa gaagatgaag      1560
     atgagtcgcc ggaagtaaat ttttgtgtga cacaacaaaa caaaaatcca aattaaattt      1620
     tttaccatac ctacaaacaa accaacttaa gcttctaata gacacggggg caaataaaaa      1680
     ccttattcga cctggaattc tgcaaaatgc gaaacaaata aactccacaa ccatcaaaaa      1740
     tataaacggc aagcataacg tatcacgtaa aggaaaactc aatttattag gaccaaacgt      1800
     accagatcaa acattttacg aaatgaattt tcacacattt tttgatggcc tcattggttc      1860
     cgaattttta gcgaaaacaa atgcaacaat aaattacaag aaagaggaaa taagaatcaa      1920
     taaaataatt ttcccgttta agaagtatca tttgaaaaaa gaaaaggttt acaaccacat      1980
     cgtgactatt caaaccataa acgatgggga atggttcgtg ccaaaattta ctaaactcat      2040
     agatgggtta acattagcac cgggtcttta cacctctaag gatcagaaat caacagtgat      2100
     gattcaaagc cacaacaaaa aaacaccaaa atacattcca gaaatcgccg ttaccgtaaa      2160
     taattttgaa gtcatatcgc caattccaaa tgtcaataac gaagctcttg acaaaaatga      2220
     catagagaaa ttaattcgta ctgatcattt atcggcttac gaaaaatcaa tgcttatcga      2280
     tgtcatactt aaacaccaag agacactact gaaaacaggc gaaaaattaa ccgcaaccac      2340
     tgcagtcaag cataacataa tcacgaaaga cgaccaacct atctatacaa ggtcttacag      2400
     atacccgcac cactataaaa aggacgtgga cgaacaaatc agtgaaatgt tggaatgtgg      2460
     aattatcaga cactccttga gtccatattc atctcccgtg tgggtagtcc cgaagaaaac      2520
     ggacgcctcg ggaaaaaaga aggttagagt tgttattgac taccgtaaac tcaacgagaa      2580
     aacggtagac gataaatacc ctatacctca aattgaggaa atcctcgata atctgggaaa      2640
     gtctgcttat tttactacac ttgacttaaa atcaggcttc caccagatcg agatgaatag      2700
     taaagatatc gaaaaaacag cattttcaac aggacaagga catttcgagt tcacacgaat      2760
     gcccttcggc ctgaaaaatg cgcccgctac ttttcagcga gcgatgaaca gcatattagc      2820
     cgactacatt ggaattatat gcttcgttta tctagacgat attattatta tcggatacaa      2880
     tctacaaaat caccttgaaa acgtttcgaa aatattaaaa cgtctagcgg attttaacct      2940
     taaaattcag ttggacaaat gtgagttcct taaaaccgag acagaatttt tgggccatgt      3000
     tattacccct agcggcatca aaccaaaccc agacaaaata caacaaattt tagaatggaa      3060
     attgcccaca acaccaaagc aaataaaaca atttttaggt cttaccgggt attacagacg      3120
     atttatcaaa gattattcta aaattactaa acccctaaca aaatatttga aaaaagaaat      3180
     ggaaatcaat atcaatgaca aagattatgt tgaatccttt tcaaaattaa aaacaattat      3240
     ctcttcagat caagttctcg cctatcctaa tttcgaacta ccatttattc taacgaccga      3300
     cgcgagcaat tacgctctcg gcgccgtact ttcacaaaaa caagatggtc tagaaagacc      3360
     aatagctttc gccagcagaa cactaaataa tacagaatgt aactactgca ctactgaaaa      3420
     agaggcttta gccataatat gggcaatcaa caaattcaag ccataccttt gtggaaataa      3480
     gtttaccctc attacggacc ataaaccact aacatacatt aaaaattcaa aaaagaatct      3540
     caaactaatt aactggagcc ttgaactgga aaattatgat tacgatgtga tctataaatc      3600
     agggaaaaca aacgtcgtcg cggatgcgct aagccgtaaa attgacgcca atgccaatga      3660
     ggtagacgaa gaatcaaccg atacaaatca ctccgcagat acatcagacg attttttcat      3720
     acacttcacc gagaaaccta tcaatagcta caaaaaccaa attgtattca gaaatgcaac      3780
     atttaatagt atcataactg aaaacccttt tcctcggttt agacgagttg tcatatgctc      3840
     aactacttac aataaaaaca atttagctga atggttgaaa gagtatgctt ctgattcaca      3900
     aactgcaatt ctggcaccgg aaagtttact ccaattaata caagaggtac acagagaaca      3960
     cttctctatt atcaacacac attttgtgtt aacgcaaaat atggtggaag acgtaactac      4020
     kgttgaaaga caggaattac tggtccagac cgaacacgaa agagctcacc gtggaatatc      4080
     tgaagttgaa aaaaagttga agagatcata tttttttcca aaaatgatta aatgtatcag      4140
     gcaaattatc aatacttgca caatatgtgc aaaacataaa tacgaacgaa gaccttacaa      4200
     tataaagata tcacctagac caatagaaac caaaccattt gacagagtcc atatcgacat      4260
     attcggcata gataaaaata attacttaac attaatttgt gcattctcta aacatctaca      4320
     aataatggaa atcgcatcca gaaacctcac agatattcaa aatgccttgg ctcaatacat      4380
     tcgaacattt ggtgcaccca acagaataat atgcgaccac gaagcagctt ttacaagctt      4440
     acagttaaaa acattcttgg ctaatttggg aactgaaata gaatttgcct cttcctcaga      4500
     atctaatggt cagattgaga aaacccacag caccattatc gaattgttta atacaaataa      4560
     gcacaaattt cctgaaatgc aatcatccga aataattgca atagttaccg cactgtataa      4620
     caatacagtc cactccgcaa cctcattcac acccaatgag attgtattca atcaaagaaa      4680
     taacgtcaat cctcaacaga tcgccgaaga agcaactgac atttttaaaa aggtatcaaa      4740
     ttttcttaat aaagcaactc agaaaatgaa aaaatacaat tcctctaaag aagacccacc      4800
     tgagtttcca gtcaattcag acgtctacgt aaagaaagac accagaaaaa aattagataa      4860
     ccgtttttcg gaaacaaaat gtttgcagaa taatattcga agtattcgca taaaaaggaa      4920
     tgtcaaaaga aataaaaata aactcaagcg tttaaggaag cagaactaat gtatctattc      4980
     ttttcgtttc aggtccattt aggaacatta gggggaagct ttatggaaat ttgccatccg      5040
     aaactcatac aactattaaa ctattattat cattccaaaa cttatacaag taaattctca      5100
     ttacaggaaa ccaaatccaa cggtcaaaac gaataaataa taaattacat atcccgaaat      5160
     aaacactcga actcagttag actaggaatt gctcgatagc gacaatgaag ttacatattt      5220
     tgatgatact tatcgttttt aaatttatta gaataatttc tcaagatcta tcaataacga      5280
     atatgcatga agactctctg ctgattttaa aatacggaac atgtaggata cagacaggga      5340
     ccattaattt aattcaccca attaacatta ccgatctaca aataaccgtt gattcactga      5400
     caaatttagc gtatagcaaa attgacaacc atctattaga gctagttaaa ttcaaaatta      5460
     agaagatgta cacaaatctt gctcagctta gacctcaaaa acattttcgc acagtaagga      5520
     gcttaaatgc tatagggaca ggttggaaat ggatcagtgg aagcccggat gcggatgatc      5580
     ttcaaattat caactcgacc ttggctgacc tggtagaaag caataaccaa caatacaaaa      5640
     tcaacgagca gcttggaaac cgactacaac tcttaacgaa tgcagtcaac aagataattg      5700
     agaggaaaaa tggaaaccaa attttgttaa acgaggttga aacaataact acaataatga      5760
     acatcgatct gatcgacaaa atcctagaaa atatccacga cgctatacta tggactaaag      5820
     tttcagtcgc aaataacaag ttcctttcag cccaggaaat gaacacaata acaaatctca      5880
     tgtatgatca aggcttacaa gtcgaactac cggatgaagc actgagtcta gtaaaaccaa      5940
     aggtagcagt taataaggat accttattat acatcctacg catcccacaa ctagacaagg      6000
     aggaagcaaa catactagaa ctacacccac taatcaacaa cgattccgtg atacaagatt      6060
     ccccaccgca ccttatcagg agaggaaatg aattattcac taccatcaaa cctgaagagt      6120
     acgtacaacg cagcaattac ataagtaagt actcagatga atgtatttcc aaattgatat      6180
     taggcaagca aagtttctgc gttacaagaa gagaaaacaa aacagaaacc cgcctaataa      6240
     cagataatct cataatagtt aacaatgcaa gattgctcaa actacaatct aattgtggtc      6300
     cagacgatcg actactgaaa ggaaattttc tcatatcctt ttcgaactgt aacataacta      6360
     ttggagatat acaattcata tcagcagacg aaactattca tctaccgatt cttcaaggag      6420
     caatgcatgg cgcccttacc catcatagac tggaggaaga tagtatgtct tacatcaata      6480
     atcaaacgat agccaacagg aaattgatcg accatgtgta cttgaatcaa tacgcacacc      6540
     aattttggaa ctggagctta ctaggaggat tgtctttttc aacgaccctc attatatcat      6600
     tagccatttt cactctcatt tattatagaa agactgttcg ttacatcatt accaaattca      6660
     caaaggataa cggagacgca tcaacccaga acagaaacgc gtgaggccac gctttttcac      6720
     cccccggagg                                                             6730
//
ID   Gypsy-453_AA-LTR repbase;    DNA;    INV; 336 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-453_;
KW   Gypsy-453_AA-I; Gypsy-453_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-336
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-336
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3060-3060 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 336 BP; 99 A; 79 C; 72 G; 86 T; 0 other;
     agttacgaga cgacctgcct cccattccgc cgagtcaaca ccaacggcca acagcacacg        60
     cgaatagcca acagcctggt cagcagattc cttagacttt ggacgcatcg aacgacgccg       120
     ccctgattcc acgcgcgagg tgacaaatag cagactaatc agttttttct tttaaataca       180
     ggtagtcgct gtcgagctcg ctctctttta ccggtaactc ttgaacagtg taaaactagt       240
     tagattcagt tagattgatt aatgaataaa gtgcaaggtg taatagtgtt agaaaacctt       300
     ttttaaaaag gctatcacag cctgggaaat gtgatt                                 336
//
ID   Gypsy-454_AA-I repbase;    DNA;    INV; 4095 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-454_;
KW   Gypsy-454_AA-I; Gypsy-454_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4095
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4095
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (04-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4095 BP; 1061 A; 1108 C; 969 G; 957 T; 0 other;
     agtggtgacc taccgacgat cgataattta ttgtgcagtc cgtgcatcag ttttttcgcg        60
     ctcgaagtag taaacggtcg tttacgtgaa atcgtctgaa aatgtcgctc gaagacgaat       120
     cgaagaccag cgccggtaat cgggtacaac tggagtcgat aagtgccccg cgcctccaac       180
     cgccgagcat gagtgagtcg aatatcgaat catatttcct ttcattggaa ttttggttcg       240
     cggcgtcggg aatcagtgct agtgcccaat acgatacgcg caaattcaat atcgtgatgg       300
     cgcaagtccc tcccaacaag ctctcggagt tgcgcgcgat tatcgatggt gtgccagcca       360
     acgacaagta cacgtacatc aaaacgaagc tcatcgaaca tttcgccgac agccaacaga       420
     agcgcctgca acgtgtgctg tccgatatgc cgctgggaga catgaagccc agccaattgt       480
     tcaacgaaat gaagcgcgta gctggatcct ctcttggtga tgctgtgctt cttgatttgt       540
     gggcatcgag attgccaccc cacgcacaag cggctgtaat tgcatcgaga ggggatgcta       600
     ctgataaaac gactatcgcc gatgccattg tcgaatcaat gggtctacgc aacataaact       660
     ccgtcgctct gcaggtgccg cagacagcag ctcgtgttcc atcgaaacca gcacaatctt       720
     cgatagagga ccttcagcgg gaaatcgctc agcttaccag taagttagaa aaagcgctct       780
     ctacacgtga cggttttcat gggcggtccc gttcgcgcag tcgtagtaaa tctacatttt       840
     ctcgccgcga aaaaacgcct gctgatgaaa tttgctggta tcaccgtgtt tatggagacg       900
     ctgcccgacg gtgccgcaaa ccatgctgtt tcaataaagc gtcgtcgtcc ggcgctggaa       960
     ataatcaatg acgccattcg cctgcccctg ccttggaagt tggcgaacct tccgatgcgg      1020
     gatcaatttt tcgcctgaaa atcacggaca gtaccacgaa catgcaattt ttaatcgaca      1080
     ctggagccga cgtgtccgtt gttccaagag gttccagcac tagcaaaatg aagcctacgt      1140
     cgatgaaact attcgccgcc aatgggacgg caatccaagt gtacggagaa gccctgctga      1200
     agataaatct cggtctgcgc cgggagtttc tttggacgtt cctaatcgcc gatgtcacaa      1260
     ctggaatcat cggcgcggat ttcatctgta atttcgacct actaattgat ttgaaacgca      1320
     atcggctcat cgataatacg accagcctcg aatcagcagg atttctcgca caaactagtg      1380
     agtattccat ccgtacgttt agctcactat cgccattcgc agaaatgtta gccgaatatc      1440
     cgtcgatcac ccgactcgct ccacctggta cggtaagcaa atcgacaatc ttccaccgta      1500
     tcgagaccac gggtcagcct gtgtttgcca ggccaagaag actatcaccg gataaactgg      1560
     aagcagctcg caacgagttc gagcatctga tgaagctcgg catctgcaga ccctctagca      1620
     gtaactgggc cagtcctctc cacatggtta aaaaagcgga tggatcttgg cgaccgtgtg      1680
     gagattatcg cgccttaaat gcccagacag tgccggatcg atatcctttg ccgtacctcc      1740
     aggactttac ggccattttg caagggaaaa ccatattctc gaaggttgac ttgcagaagg      1800
     ccttccatca agtcccgatc catccggatg acattccgaa gactgctatc acgactccat      1860
     tcggcttgtt tgaattttcg tttatgacgt ttggacttcg aaatgccgcc cagacattcc      1920
     aacgtttgat ccacgacgta gtccgaggtt tagactttgt atacccctac attgacgacc      1980
     tgtttattgc ctcatcttcc ccggaggaac atcgtgacca tttgcgccag ctgtttgaaa      2040
     ggctcaagca gcacaatctg gcaatcaacg tcgccaagtg tgaattcggt cgagatagaa      2100
     tggcttttct gggacatatg gttaccccca agggaataag cccattacca gagcgcgtgg      2160
     aggcgattca aaacttcaag aagccgtctt cagtgaagga gctgaaaagt ttcttggcga      2220
     tgattaactt ttatcgacga ttccttccga atgccatcga agcccaaata ccattgctgg      2280
     cgatgacccc tggcaataag cgaaacgatc gctcgccgct agtttggacc gatgaaacca      2340
     ccacggcttt cgaaagatgc aaacatcagc tcgcccaagc tactctacta gcacatcctt      2400
     ccaaggccgc cgaattgtcg ctttgggtgg acgcctccga tacagcagcg ggtgcggcgc      2460
     tacaccagat agtcgacgga gaacttcaac cactaggatt tttttcgaag aaattcgact      2520
     ctgctcagct acggtacagc acctacgatc gagaattgac cgcaatttac cttgcggtgc      2580
     ggcattttaa gtatatgctg gaagggagga gctgccatgt ttacaccgac cacaagccga      2640
     tcacctttgc ctttcgtcag aagcttgata aagcaaccga ccgacaagct cgccagttgg      2700
     actatattgg acagatcaca acggacattc ggcatatcgt cggcaaggag aatgtcgtcg      2760
     ccgatcttct ttcgcgcatt gcctccgttc gagccaaacc agcgatagac ttcgacgccc      2820
     tcgccgacga ccagcaaatc aacgaagagc tgcaaaacat tgttcaaggt aaatcaaaaa      2880
     caagtttaaa gctgaaactt tttaccattc caggcaattc aaaacaactg ttttgtgatt      2940
     gcacggacga tcgcattcgt cctttcgtta cggaaaagtt ccgtaatgct gccctgcacg      3000
     caacgcactc actctctcat cctggcacac gggcgacggc taaattgatg acgcaacgat      3060
     tcgtttggcc gagcatcaga agggacagca tcgcatttgc aaggaactgc ttgcagtgtc      3120
     aacggtccaa ggtgacgcgc cacacacaat cacccattgc gcgctactct tcgccagatg      3180
     ttcgattttc gcacataaat atcgacatag ttggaccatt tcccccaagc aagggaaatc      3240
     gctattgcct taccatcatc gaccgtttct cccggtggcc ggaggcaatc cctgtgccag      3300
     atatgacagc gcagaccatc gccgaggctc ttgtcgttgg atggattgcg cgctttggtg      3360
     taccgacctt cattacgacc gaccaaggac gccaatttga gtcttcactg tttgctgagt      3420
     tggttcgtct gctcggtatc agccatctcc gaacgacagc ataccacccc caagcaaacg      3480
     gtatgataga acggtggcat aggacgttga aggcatctat tctgtgccat gacaccgacc      3540
     gctggaatga acaccttccg atgatcttac ttggactacg aacaacgcat aaggaagaca      3600
     tcggagcatc gccagcagag atggtttacg gatcgaccct ccgcattccg tccgaattct      3660
     tcgctgatag ctccaacaaa cccagtgaag ccgagttcgt agtaaatttg cgagaagcga      3720
     tgcgaaaact acgaccaacc gacacgactt ggcatggcaa tcgaagcgtt ttcgtacatc      3780
     gagaactcag cacttgccag catgtattca tccgcaacga ttcagtacga ccatcattat      3840
     caccacctta cgatggtccc tatgaggtgg taagccgaag cagcaaacat ttcacggttg      3900
     acatcaaagg acgaaaggtg aacgtttcga tcgaccgatt gaaacctgcc tattccacga      3960
     aggagcaact gagtagctca gagcctgtag ctactcccac cactacaact tctccgacta      4020
     gggtcactcg ctctggccga cgagttgtct ttccggacag atatcgctag gatccctagt      4080
     ctaggagggg agtac                                                       4095
//
ID   Gypsy-454_AA-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-454_;
KW   Gypsy-454_AA-I; Gypsy-454_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-274
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-274
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3061-3061 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 274 BP; 84 A; 64 C; 38 G; 88 T; 0 other;
     tgtagcatca tcaccatcat catcgatgct acaacgacga tgcaacatct cgcccgatcg        60
     gtgatactat tttaaattac aatagcagcc catttggcta tcgttccttg aattcaacaa       120
     ttgaacttaa attctatagt ctatacaaat ctattttttg accataagag gcaatgccct       180
     caaatgtata tataaacact gtaggtagct ctcagaaata tagtttttat tctactcgca       240
     cagcaaacag tctttgcttt ctctcgttcg ccaa                                   274
//
ID   Gypsy-455_AA-I repbase;    DNA;    INV; 5670 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-455_;
KW   Gypsy-455_AA-I; Gypsy-455_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5670
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5670
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (04-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5670 BP; 2228 A; 1064 C; 948 G; 1430 T; 0 other;
     tttggcgacc agtgatagta tggaaccagg acggaaccga aaaagtgaaa tgaaaactgt        60
     gctggtgatt aagttagcag cagtgattgt gctaatttac ctgataactg tgatcagaga       120
     tgaacttatg aacatgtatg tagcgaagta cgctattcta acaaactagg aaaatgttcc       180
     tgaacgctta ttaatttgag aaaataatta agtgttttgt gaagattggc gtaaaagtgt       240
     acaacgaaaa ctgagtagaa agtgtcttaa cattattaca aacatgggta gcgaagaatc       300
     caagacacaa atgaaccacc agagtgacgc tgaagtgacg attattaata atcaaaatga       360
     gcatgcagag aagttgaaaa atcatgcatt catactatgg gtcatccttg caatagtggc       420
     tactcaatta gctataacac ttgtgggtat agtgaaacgt tacgtgagta ggaaaacaat       480
     gaataaagcc gaagcgctta cgtaaacaaa cactaatccg cgaagaacaa tttcgcaaca       540
     aacccaattt tagtccagaa aatcagaaca aatacatgtc acaaacgaaa ccgttagtcg       600
     acgaaaacgg taacacacga ctgacattgt gactatggga aaaaagtgca aagcacgtga       660
     atgtgcgaaa aaattgaaaa gcaacagcag gagagaccac tgccgtactt acacgacagg       720
     cgggattaaa tgggacgaat gaccagtacg ctacgcagca gtgctcagga cgacgctacg       780
     gacggaaaac gacgttccgc aaactgcagg taataaagta gaatcaaata ataaaataca       840
     cacacacaca cacacacaaa aatgcagtat atagaagctt aatatgtacg ttcaccgatg       900
     gacatcatag aaaataattt gaatcaatta agaacaattc gaactaattt tagaaaagcg       960
     ccaaatcgaa gatatcggaa aagtacaatc ttaaataaaa tttcggaaat ccaaacccta      1020
     agaaaaaaca tagcagatac attagtaatt ttgaaaaaca caatcgccat tgaaactttt      1080
     gatcgtatta ggagaacaga gaggttatta actgggaaac tacttcttac cattgaccaa      1140
     aaattagaaa atttgagtga taaacctgaa ttaacattga caaatttggg aaaacttatt      1200
     attattagtt atcgattaac ttaatccaca agaatggcag ctctaataga aacagttaaa      1260
     ccggtatcat cacttttgcc aacgtatgat ggttcaccta ataaactgca gaattttttg      1320
     gacgcacttg gtgtcgtcaa acaaatcgca tcagataatc aattgccgac agtcataaac      1380
     attattctaa caaaacttga aggccgagca agacatgctt ttcctcaagc tcctgccact      1440
     ttcgataaca taatagctac attaaaaaat gtgtcagctc cagtaccccc agaagcaatc      1500
     atagcaaaac ttgcgaattg caaacaaaga acaaatataa ccgagtatac cgaagaaatc      1560
     gaaaaattga ccatgcaact tgaagcggcg tatatttcga aacaaattcc agcacaggtt      1620
     gctcagacaa tggccaccaa agaaggcgtc aagcacatga cagccggatt gaaagacgaa      1680
     aaaacttcca taatcgtcaa agctggacaa tataccaata tttcagagcc aatcaataaa      1740
     gcgctcgaag aatcgcctca gatgtcaaat gaagtcaatg tgcagttcgc tacagatcat      1800
     aacaagcata actaaccaag atttcaacag tctaattacc ataactgccg aaacaaccaa      1860
     tatcaacggg gaaaccgcag tcaacgtgat aatacgtata atcggggaaa ccacgaaaga      1920
     agaggaaatt ttaataatat acaacgtttt ggaaataatc aatttcgagg aagtaggggt      1980
     agaaattcaa attaccctca gcgaaatgta tacatatcgg aaaacggcag agggccttcg      2040
     gaagatcccc aaaccgaggc actacgaatc aacggggaga caacatttcc aaacagggag      2100
     taaacgtatt taattgcaat ttaaattaca ctaattttgt tcagctgaaa gtagatatgt      2160
     gtgaaaaacc tgtcaattta atcgttgata caggagcgga tgtgtccata attaaagaaa      2220
     atttattgaa agaattccaa aaaatataca ttaaacagaa atgtaccatt aacggggtga      2280
     ccgatggaag aattgaaacc attggtacac taacataata attgataaca ctttaatacc      2340
     acataaattt caagttgtaa caaagcaatt tccaatccaa acagatggga tactttctag      2400
     ccaagtacga atgcaatata tgtttgaaaa cctggctcct tacatttgaa ataggtagaa      2460
     agcgatttga actaccaata gaagataaat ataaaggtaa tttagttatt cctcctaggt      2520
     gtcaagttat caaaagaata aatttactta ccatacaaca ggacagtgtt attctgtcta      2580
     agcaaattaa acctggagtc ttctgtgcta acaccatagt tagtccagac gcgcaatatg      2640
     taaaatttgt aaatgtcaat aataatgcag agataattct caataatttt aatccaaaca      2700
     tattaccatt aaaagacttt tccactcaaa ccctggaaaa aactgtaaat agcaaacagg      2760
     atagagttaa acaggtattg aacgaactca atcttaaaaa ttctttacct gtaatcaaac      2820
     ataaactgaa atatttatgt gcaaagtata atgacatctt tgcattgaaa gatgatacgc      2880
     taacagcgaa taatttttat aaacaaacaa ttcacttgga gaaaaggaat ccagtttata      2940
     gaaaaaatta cagattacca gaagctcaca ggcaagaaat aagaacacaa gtaaacaaga      3000
     tgcttcaaga taaaattatt caaccatcaa tctcaccgtt taattcgcct attcttctgg      3060
     tacctaaaaa attaaataat gatgaaaaga aatggcgact agtcgttgat tttcgtcagc      3120
     taaataagca aataaccgcg gacaagtttc ctcttccgcg cattcatgaa attttagacc      3180
     acattggact agcaaaatac ttcactactt tggatttaat gtccgggttt taccagatag      3240
     agctcgacaa aaattcaaaa agatatacag ccttctccag tccagatgaa cattacgagt      3300
     tcaaccgact accattcgga ttgaacgtat cacccaacag cttccagagg atgatgacaa      3360
     tagcactcag cggactaccc ccagagtgcg catttcttta cattgatgat attatcctca      3420
     tgggttgttc catcactcat catcttaaaa atctggaata cgttttcgca aagctacgtt      3480
     attacaacct gaaactaaat ccttcaaaat gtgttttctt tgcatccgac gttacatacc      3540
     tcgggcatca catttatgaa aaaggaatcc aaccggataa gacaaagttt tctgcgatac      3600
     aaaattatcc cataccaaag aatgcagatg aagttcgtcg attcgttgca ttctgtaact      3660
     attacagacg attcatccag gatttcgcag agattgctta tccgctaaat aaattactac      3720
     ggaaaaatac tctatttgta tggaccacag aatgtcaact tgcattcgac actttgaaaa      3780
     aacaattgtt gtcacccaat atactacagt ttcctaattt cgaaaaacat ttcacattaa      3840
     tcactgatgc ttcaaaaatt gcgtgtggag cagttctaac tcaaaagtac gatgacattg      3900
     acttaccgat tgcgtttgcc agtaaagcat tcacgaaagg cgaagccaat aaatcaacga      3960
     ttgagcaaga actcacagca atacactggg caattaccta ttttcgccct tatctttacg      4020
     gtcgcaaatt tacggtcaaa acagaccata ggccgttagt ctatttattc tcgatgaaaa      4080
     atcccacatc aaaactgacc aggatgagag tagatctcga agagtttgac tttgatgtac      4140
     aatatgtacc cggaaagacc aactttggag ctgatgctct atctagaatc aaaatcaata      4200
     ccgaaaactt gaaagacatg tctgttcaaa atcagtctgt ccttatggta caaaccagag      4260
     cagcatcgaa gaaaaatcga aataacacca gcagcgactt acaagtgatt ttcagcgatg      4320
     tagagactga tcacctcaat atccgagaat cactcaatta ccaagaaaca tacaatcttc      4380
     ccaaattaat cattgagcgc tcagccacac gagatggcat tataatcaac ataatggata      4440
     aaagctatca aagggagttg actcaagcgt caatcatccg ctcaaagcta tccgaagtaa      4500
     acgaaaacct aggtaaaatc gcgaaacaaa tcgaagccat ggcaaacaaa ttgaagataa      4560
     agctgttagc tctagcgcta acaaacgaaa cctttcaaat aacaaacatt caaactttca      4620
     agcaagtttg taacaaagaa ttagaaaata ttaaaatttt tatatatcaa ccaccacagt      4680
     tgattgttaa caaagatgta atacaaagca ttatgaaatc tcaccacaat acgagtattg      4740
     gaggtcatgt tggttcaaac agactttatc aaaagttacg ttgccaatat acatggaaaa      4800
     atatgaagaa atctatcttt gattttgtta aaacctgtgt aaactatcag aaaaacaaac      4860
     atacaattaa aacaaacgaa aattttgttt caacacctac acctcaaaaa cctttcgact      4920
     caatagctat ggacacaatt ggtccattta caaaatctga ttctggaaat aggtacgcat      4980
     gaccaaaaca atgtgaccta tctaaatatg taatcataaa agcaatacca aacaaacaaa      5040
     ctgaaacctt ggcgaaagcg tttgttgaaa gtttcgtttt gatatatgaa acaccttcaa      5100
     tcattagaac agatcaaggt accgagtata aaaatgaaat tttcgataaa atctctgaaa      5160
     tgctacatat ggagcaatct ttctcaacat ttgaattaat tttcggtcat caagcagtac      5220
     ttcctcagaa cataatcaat ccattaacaa tagaaccaaa ttataattta gatcaatatc      5280
     agtttgaatt gaaacaaaaa ttgcaagcag ctagaataaa aaaaggatct gatagataaa      5340
     gagaaaaaga aacgaattca aagacatgca ataaatgcta atcccataga tatcaaagta      5400
     aatgataaag taatgataac aaatgaaaac agaaataagc ttgattcggt ttataaagga      5460
     ccatatgtag tagttaaaat agtccatcca aacgtagtaa taagaggtga aaattctggc      5520
     acacaagtca ttcataaaaa tagattaata aaactgaaag aaaattattc aaaataaaca      5580
     aaaaaaaaac aaaaaaaaac gaaatactgt gaactcaaat tcaagcccaa cattttcgga      5640
     acgctataag cgttccttct caaaggggga                                       5670
//
ID   Gypsy-455_AA-LTR repbase;    DNA;    INV; 416 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-455_;
KW   Gypsy-455_AA-I; Gypsy-455_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-416
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-416
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3062-3062 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 416 BP; 119 A; 93 C; 72 G; 132 T; 0 other;
     tggtgtagca tccttacact catattacat atttcgactt aacattttca aattcaacca        60
     tgagagaatg cattcttaaa tttattgctt tcattccatt ctcagtaggt cataaaacaa       120
     ggtcgcctcg aaccttcctc gtttacattc tttcttttgc tacatgtgca caacagctta       180
     tgaacaacag tcaacctttt gccttccgcc atctggttta cattaactat tttggaaaca       240
     tcgttggtgg cttgagtttg ggtcaacact aggaataagc ttccgcgtac caatgcaaaa       300
     gggtacgata gtctataagt tatttggtaa gcgaaaatac acgaacagtt cagaacatca       360
     actcgaagtg atcgccggtt tttctatccg aatgaaaccc tcagcagcgg tcgtta           416
//
ID   Gypsy-456_AA-I repbase;    DNA;    INV; 6480 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-456_;
KW   Gypsy-456_AA-I; Gypsy-456_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6480
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6480
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3033-3033 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6480 BP; 2381 A; 1391 C; 1056 G; 1652 T; 0 other;
     ggaggctccg gcgagatcct cctgtgcggg aattgtataa agtgaagtga acggcaaaaa        60
     tcttagtgaa aaaagtgtag caaaaatctt gaaacttagt tgcttatcat tggttcaaag       120
     agccaagtta catttagtgc atcactggtt caaagagcca ggccgtaaac gtatcactga       180
     agcgaatcgc aggacactga ggagcaccac ccgatcggcg tgcacggccc gaagtagcag       240
     cagcaaaagc agcaaaacgg atacccaacc acgcctgcct gcgaatcccc cgtcagagag       300
     gacagccaac caggaccagc gattagatgt tggcctacat gtaagtaatt gattacttat       360
     ttaacctaaa aagtccaaat atttttggct cgatacaaaa aagtccaatc ttcattggca       420
     ttagttaatc cttggcaata agtgatagtg atagtgatta taaaagtgaa aacgtgagag       480
     ttaaaatgac agaaaacaat ccaatttata ctgaggcgca gaaacacgcc attactaatt       540
     tttctaatgt cggaaaatta tccgacttcg tgaaagggtt aaataccttt gacgggaagc       600
     caaccgactt agtcagttgg attaccgatg tagagggatt gttcgatctt tttaaagatc       660
     tgccccaaac ttcagttgaa tatggaattt tgacccgaag tattcgtaga aaaatcatcg       720
     gtgaagctgc ggatgtactg aacgctaata atgtttttta tgaatgggcc gatattaaaa       780
     atacattgtt actctattat agagacaagc gagatgtgca aacacttgat tttgagctga       840
     ccacaattaa aaaaggcctt aacgaatctc taaattccta cttcagtagg gtgaacgagc       900
     tgctatctgc gattatcgtg cagattcaaa tagataatga aatgcaagaa aacgctactg       960
     cacattcaga ttattttcga aaaaaggcac tagattcttt tacaagagga ttagaaaaac      1020
     ctctgaatgt cttattgaaa actgcagacg tgaaaaacct aagcaaggct tatcaattct      1080
     gcatggatta ttacaatatg gatatacggt ccgctccatt caggaacgaa cacagtagtt      1140
     atccaacccc aaaaccaaaa gaattacatg ttccttctct accatttaat caaataagac      1200
     caatacctcc accaagaaac tatccgcctc tacctccgaa accggcacca agacagcacc      1260
     ctctacaacc cccacctcga ctccaaagac aatttcagcc acaatttcag ccacaatttc      1320
     aaccacaatt ccaaccacaa ttccaaccac aattccaacc acaatttcga tcacaatttc      1380
     agccacagtt tcaaccacaa tttcgatctc aatcccaaac cccaatgcaa cctagaccat      1440
     tccaaaatca aacgtcccaa cctacagcta gatctatgcc agagcctatg gaagttgata      1500
     gaagcattcg atcaaaagtt ataaattatg gaaattatgg gaagaaagta gctcacccag      1560
     tagagttgca ggttgattac gaacctgaat atgagcacga atacgattat cgcgatccgc      1620
     aagaggaaga tcaactgtat aacgaaaata tagaagaaga ccaagaggaa actgaaccaa      1680
     tgcccccaac ttctggcatt gcgtcccatt ttttagagtg gaatccgagt tggtaattcc      1740
     aactcttccg tatatttact taaaaacaaa catcggggaa ttcccattcc tcgtggatac      1800
     tggcgcgaac attaacatga tagaaccaaa gttagcttac agctgcaaaa tagctaaacc      1860
     atatgacttc aaagcaaacg acatatctag tgcaaacgga atgtttaatg ccacctctgc      1920
     tatagacatt aatttttttt atcccaaaat taaccacaca gcacaatttc tcttacataa      1980
     atttcatcca ttcttcaagg gcataattgg aacaggtatt ttgacctcat tgaacgcaaa      2040
     aattgatcta ggaaataaca ctcttcactt gagtaaagaa gacgaaaatt taaatattcc      2100
     acttttggta catagacccg aaaataatcg aacaacaaat tcattgttca gaactgatca      2160
     tttaccagca gataaaagca aaaaacttca tgaaatgctc aacgctcacc acgatatttt      2220
     tcacctaccg aatcaaaaac taacatgctc cacgaatgtt gaatgtgcaa tcaacacaac      2280
     agacgacatt ccagtacatc aaaaagtgta tccttaccca gctgcctatg cagatgaggt      2340
     gaaaaaacaa atcgataagt tacttgctga cggaataata agaccatccc gttcagcatg      2400
     gacagcaccc gtttggattg tacccaagaa gtctgatgct tctggggaaa aaaagtttag      2460
     aatggtgatc gattatcgga aaattaatga gaaaaccata ccagacaaat atcctatgcc      2520
     tgagataagt tatgtgcttg accaacttaa aggtcaaaaa tacttttcaa ctcttgattt      2580
     agcatctggc tttcaccaga ttaaaatgag agacagagat attgaaaaga cggcatttgc      2640
     aattaacaac gggaaatatg aatttacccg gatgccgttc gggcttaaaa atgcgcccgc      2700
     aatttttcaa cgagcaattg atgatgtctt acgtgaacac ataggcaaga tatgttatgt      2760
     gtacatagat gacgtcattg tgttcggtag tacttttgaa gaacatttga aaaatttgaa      2820
     tacagttctt gaaacgttga aaaaagcaaa tctccgaatt cagttagata agtctgaatt      2880
     cttacactct gagcttgaat ttttaggata cattattact gaaaacggta ttaaacctaa      2940
     cgtcaaaaag attgaagtca tgaacagata cccagaacca aaaagcctca aagaacttcg      3000
     ctcattttta ggtatggtaa gttattatcg tagattcgta aaggattttg caaaaatcgc      3060
     aaaacccctt acaaatcttc tgcgagggga gagaacatct acatccaata gaaaaattag      3120
     tctatccgat tctgaaaagc gctgcttcga aaaactcaaa aatatcttat cctcagacga      3180
     cattctaata taccctgact acaagcaacc atttatactc acaacagatg catcagaatt      3240
     cgctatcgga gccgttctct cacaaggaga agtcggtaaa gatcgcccaa ttcatttcgc      3300
     atctcgtact ctttctagaa cagaagaaaa gtattcggtt cccgaaaaag aaatgctagc      3360
     catatattgg tctcttcaaa tatttcgaaa ttatctatac ggagcaaaat tcatgatcct      3420
     aaccgatcat caacccttga cttttgcatt gtcaccaaaa aacacaaact ccaaactcaa      3480
     acgaatgaaa gcttacctgg aagaacatga ctacaaaatt gtttacaaac ctggaaaagc      3540
     caatgttgtg gcagatgcct taagcagaat tgtttgttct atgaccatca caagacattc      3600
     tgccgaaaac agtgatgatt tctacataca agctactgag tcgcctatta acatatttaa      3660
     atatcaagtt atcctgaaag aaggaccaga taacgttatc gttactcacc cattcccaaa      3720
     ctacactaga ttagaaatat cattatcaaa tattaatgaa aattccttat tacagacact      3780
     taagaagcat ttcgaccatt caaggataaa cggattgtac acttctgaaa ctattatggg      3840
     aaaactgcaa gaggtttacc gaaaacattt tgcccaaaat agtattctga aaatccgctt      3900
     ttctcaacga atgttagagg acgtaaacaa cgaggatcaa caatggaaca tcatacggga      3960
     tgagcactat aaagctcata gaggattcga cgaaaacaaa caaaaaatct ttcgaaattt      4020
     cttttttcca aaacttagtc aaaaagttag ggactttgta actaactgtc aaatttgcaa      4080
     cgaatgtaaa tatgacaggc agcctataaa gtttccaatt caaaaaacac caattccaac      4140
     atcacctttc gaaatagctc acatcgacat aatgtttctg gaaaataata gttttctaac      4200
     ttacattgat aaattttcaa aatttgcgca aataagacaa attgattcgc gagcagctgt      4260
     tgacctcata ccggccatca aagatatttt gctcaaatat aaaacaccca ccacacttgt      4320
     gatggacggc gaaaaatctt ttatgacggg agagttagtt aatttttaca acatgcataa      4380
     aataacccca tacgtaaccg ccacggggcg aagcgagatg aacggaaccg ttgaacgttt      4440
     tcattcaacg cttctggaac tctacagaat tactaaaacc gaacaaccca atataccagt      4500
     tcccgacgcg atccaactgt cactccaaaa atacaattca tcaatccact cttccaccaa      4560
     attcactcct atagaagtaa tcctgccttc ctctcgtact cccgaaataa tagaaaaagt      4620
     ttaccaaaat ctacaacaga cacaaaaaaa cgccttagaa caccacaata aaaacaggaa      4680
     acatatacat atagacgaga atcaagatgc atacgaaacc actagacaaa gactgaagca      4740
     caaaaagaga tacaaaaaaa tcaaaatcac caatgtaaac aaaagcacaa ttaccaccga      4800
     cgatggaaga aaagttcaca aagacgacat aaaaatacga aaaatataaa atcgacttct      4860
     tttctacatt tcagactttt gcccttactc ctcaatggac cacacccact gtctgcaaaa      4920
     caagatgtaa agattgacct acaagaccta ggacgacagc ctttactggt attccaccac      4980
     aacgaagcac gaatcagact cgactacaga tactacattc accatttcaa ccttacgtca      5040
     ataaaatccc aagttagaaa cctcaaaaac caattcgaaa atttcagcaa aaatcagttt      5100
     acagatctaa tcatagaaaa atttaacgaa atagattttg catttaaaag tattgaccct      5160
     cttaaacgac ataaacgatg ggatagatta ggaagtgctt ggaaattttt agctggaaat      5220
     ccagatgcta atgatttaag aataatcaac tcttccatta ataatttgat tattaacaac      5280
     aacgaacaga ttaagatcaa tagagaaatc aatttacaat tgaaagaggc aattttcaaa      5340
     actcaaaaag ctatcaattt gttcaacata ggatctgtag aaatgtattg tacaaaaata      5400
     ttgtttcatc tcaactacct taccgagaag cttaatcaaa ttatcgaaac aatcactttg      5460
     gcaaaattag gaattgtaaa cgaaaaagtt ctcagtcaac aagaaattga gattttaatt      5520
     tcagatctag ataaagaaaa tgtaacagtt catacaggta ttgaagccat atcttatgct      5580
     tcgacagcaa ttctatcgaa caggttagaa atcgcactta tcatcaaaat gcccaaactg      5640
     gacccgagga tcttcgacaa ggtgcacatt tatccaattg tgcaagacca gaagcaaatt      5700
     catgtgccca ctccattcta ccttatccac gaaagcgaaa tctaccaggt aaactccatc      5760
     gaacccacta tattcgacaa tagcgaaata caactagata attcgacatg cttaccacga      5820
     ttattaagag ggaatccagc agtttgcaat tttactgtga accatgccag aggacagata      5880
     agctatctgg atgatcaaca tttgctcatc aactcactaa caaatttcac actaatctca      5940
     aattgtggaa taaccgatag aaatttatct ggatcatttg tcatctactt caataactgt      6000
     caattgacca ttaacaacat tacatatcat aaacggaccc aaaacctgcc gggaaatcct      6060
     atcaagcttc cattggacgg catcgaagtt aagaagcaca gagaagttct taacatcagt      6120
     ctagaacatc ttcatcaatt acacctagac accaggaaag aattagaagt catccgtcta      6180
     tcggccagta gtatcacttg gccacattgg acactcatcg gagggatttc attctctcct      6240
     ctcataattg gtacaattat tctaagttgt ttcaggggaa gaaccataag agtaaaaatc      6300
     aacgaacgtc ggaaagcaaa caacaatacc acgactggta atcaacacca tgccaccaag      6360
     atctccccaa tagacctgga aaactctaat ggtacggtaa catataatca acataacatc      6420
     tttcggaaac cttcaccagc ggatatgatt cggatggaac ctcatctcta aggagggacg      6480
//
ID   Gypsy-456_AA-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-456_;
KW   Gypsy-456_AA-I; Gypsy-456_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-282
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-282
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3063-3063 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 282 BP; 90 A; 56 C; 72 G; 64 T; 0 other;
     agttagcacc cgagccagcc gggccggaat gctgacaacg actttgtcgc caggtggcaa        60
     cgaaaacacc aaaaacgggg gcaacgtgaa taacatgaat tgctgacggc atcaacggag       120
     cggatggcaa caccgaggat ggcgacacga tcgataagtg caattaatca gtttgaagtt       180
     gtaattatag cattgctcga aataaagttc agttgttctt aggctagcaa gtagtgtagt       240
     agtatttttt aaaaagggaa actccctgca gaattcttaa ct                          282
//
ID   Gypsy-457_AA-I repbase;    DNA;    INV; 6586 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-457_;
KW   Gypsy-457_AA-I; Gypsy-457_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6586
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6586
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3034-3034 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6586 BP; 2287 A; 1443 C; 1149 G; 1707 T; 0 other;
     ggcgcccgaa tagggacccg tcgaagtggg aatcgtataa gtgtccggta gtgaaaaatc        60
     gttcaacaag tgtagtgtaa aaatcctcaa agtgatctat cacaccattg gtggaaggag       120
     cctaacacca caccctaggt tcaacgagcc taccctacgg aacgaagcga ggatcaggac       180
     accgcatcca gctggatcaa tcgttatcag ggcccggagt agcagtcagc agcaaaacgg       240
     atcaacccga aataactgcc tggttctccc ccatagacgg agtcccgcca tcaaaaaaaa       300
     aatcatccca ggaaaaccca ggaagtccaa cggaggatgt tggcaatttt actgtaagtt       360
     acttttattt tattcaatca aacaagtgct agtgatagtt ttaaatccga aaagtgtgag       420
     tgaaatattt caaaagtttt aatttttgtt cctatctgag tgattttctg attacggtga       480
     ttttgtcgta gttctcaagc tctttcccaa ttcgctcaat attttaccga agaagaaacc       540
     gcgagtaaat ttctattact ccaatatgat gaatcctaac cctaatccag tgcccccacc       600
     ttctcctatg accattcaac agtttattga tctaggcaaa gttccagact ttgtcaaaga       660
     aattaaaatt ttcaagggtg atcctaccag acttattgat tggatcaccg atgttgattc       720
     cattttcaga acttaccgcg acaacggtgc gacaccgtcg caaattaata tccttgaacg       780
     gtcagtgcgc cgcaaaattg atggcgaagc tgccgatatt ttgaatgcga ataatatctc       840
     gtcctcttgg acggatataa aaaacacgtt aatcctgtat tatcgcgacc gacgggatgt       900
     taaaacgtta gatttccaat taacatctat aagaaaatct gccgaggaaa gcctcagcag       960
     ttattacagc cgtgtcaatg aattattatc tttgataata gctcagatac aaacggacga      1020
     caaactgcga ccgaatgccg cagcacatat cgactacttc cgtgacaagt cactcgatgc      1080
     attcatcaga ggattggata aacctctgag catcctgtta aaaagtacaa atccaagaac      1140
     cttgggtcaa gcttacaact tctgcactga atattataat ttagatatcc gttccgcccc      1200
     ctttcgaaac gaacatggta gccaatcatt gcctaagcca aaggaacctc caaaaatacc      1260
     ttccaggaca cagtttttaa atccaaaaat tctattaccg ccaccattac ctccaagaag      1320
     gcctagtgtg cctcaaaatt atgctttacc tcccagagtc cccttgcaaa ccaacccatt      1380
     tagaaatcag ccttcccaaa atacattctc atacaatcca ttttcacaaa accccttcag      1440
     gtcacctcaa atttcccaaa aagtagaacc catggaagtt gaccagagtc aacaatcgaa      1500
     attcataaat tatggtaatc ggccgccaat gaatttgaaa aggccagctt ctcaacaata      1560
     tcaccaaaat atcaaacgcc aagcacatcc gttagaaaac gcataccctg tttatgatta      1620
     ttatgataat tacgataatt acaaccagta tgcttatcag tacgatcaat catactacaa      1680
     cgaatgttat ccagattatt cgatcccata tcccacgcag gacggctcat atgacgaagc      1740
     gcctcctgtt gacaactttg aaataggaga agcctctggt acctctccgc caaaacaaaa      1800
     tgctgctgaa cctccagaac agcaagcaaa ttttttagaa tggctccccc gttggtaacc      1860
     ccaacgatgc cttacatcaa ccttaaaaca agcattggcg aattcccctt tttaattgat      1920
     acaggcgcga atataaatct aatacatcca atgctagcgt acaattattc attagcaaaa      1980
     ccgtatcatt tcgcggcaaa tggtatcagt agcgctaatg ggaaattcag ctctaacact      2040
     gcgattgata ttgaattttt tagaccaaaa atacattacc gagcacaatt tctattacat      2100
     gagtttcatc ctttttttca cggtataata ggtaccggaa tattaaacgc actcagtgca      2160
     aagattgacc tcaaaaataa cactctccag ctaagtaaag acaatgaatt tctgactatt      2220
     ccccttcttc aatattcccc cgcacaaatt gttagttccc tggaaacaaa tccaaaccca      2280
     tccagttgcc taccccaaca atcggccctc gagccacggg caagcaacgt tgacaaaatg      2340
     tttagaacgg ctcatctttc agacgacgag aagggcaaat tattcgaggt gcttgaacgg      2400
     catcaagaag tgtttcatca gcccgatgca aaattgactt gcagtactgt aattgagtgt      2460
     gctataaaca ccgcggatga tattccaatc caccaaaaag tttatccata ccctgctgca      2520
     tatgcaacag aggtaaataa acaagtaaaa aaacttctcg atgatggaat tataaggcca      2580
     tcccgatctg cttggacgtc ccctgtgtgg attgttccaa agaaatccga tgcctccgga      2640
     gagaaaaagt ttcgaatggt agtagactac cgaaaattaa atgaaaaaac tatatcagac      2700
     aggtacccga tgcctgaaat aaattatgtt attgaccaat taaaaggtca acaatatttt      2760
     atcaccctcg atttggcatc tggtttccac cagataaaga tgaaagagag tgacatcgag      2820
     aaaactgctt tctcgattaa taatggcaaa tacgaattta ctcgtatgcc attcggtctc      2880
     aagaatgctc ccgcgatatt tcaacgtgca atcgatgatg tattaaggga acatattggg      2940
     aaaatatgtt acgtctatat tgatgacgta atcatattcg gcaaaacact cgaagaaaca      3000
     cttaagaatc tcgaggtaat tttaaaggca ctgaatgatg ctaatctgaa aattcaattg      3060
     gataagtcag aattcttaca taaggaaatt gagtttctcg gttatgtcat cacatctaag      3120
     ggtcttaaac caaacattaa aaaaattgaa gcgatagaga agtatcccga accatcaaca      3180
     atcaaagagc tgagatcatt cctaggaatg atgggctatt acagacggtt cgtaaaggac      3240
     tttgcgaaaa tcgcaaaacc ccttacaagc cttctgagag gggagggatg tacctcaaat      3300
     aaaaagatca aatttaacga agcggaatct aactgtttta ggaagatgaa aagtattcta      3360
     tcttcctcag acattttaat ttatcccgac tacagcaagc cttttattct cacaaccgat      3420
     gcatctgatt tcgccatcgg agctgtcttg tcgcaaggcg aggcaggtaa agataagcct      3480
     atccattttg catctagaac tctctcgaaa tccgaagaag gattctcagt accagaaaag      3540
     gagatgttag ccatattctg ggcattacaa acgtttcgaa actatttata cggttccaaa      3600
     ttcaaaatcc tcacagatca tcaaccctta actttttctc tatcagcaaa aaacacaaat      3660
     gcaaagctta agcgttggaa ggcgtatttg gaagaacacg attataccat tgaatacaag      3720
     ccaggcaaaa gcaatgtggt tgctgacgct ttgagtcgaa tagtgtgttc catgacagcc      3780
     acccaacact cagcggaaaa tagcgatcat ttctatatca aatctacgga atcccctatt      3840
     aatgtattta aacaccaggt tattttgaaa aaaggtcccg ataaagtcaa tacagaacac      3900
     ccctttgaaa aattcaccag agtaaatgtt tttatcagtg atattaacga caattctcta      3960
     ttacaggtat tgaaaaacca ttttgatgtt aataagttaa acggactctt aacaactgag      4020
     gaaattatgg gtaaattaca ggaagtgtat aaaactcact ttggagataa aaagctgtta      4080
     aaaatccgtt tcactcaacg tcaactccag gatgtccgag aagagaacga acagtgggat      4140
     ttgatacaca aagaacatta tcgagcgcac cgcggcgcag atgaaaataa atggcagctt      4200
     ttgaggaagt tttattttcc aaagctctct caaaaattgc atgactttat aaaaaattgc      4260
     cgaatatgtc acgagaataa atatgataga agccctattc acttccctat ccaaaaaact      4320
     ccaataccta atcaaccgtt tcaaatagct cacatcgaca ttcttttcat agacaatctt      4380
     cagtacttaa cttatgtcga taaattttca aagtacgccc aagctcgttt aattgaatcg      4440
     agagccgctg tagaccttat tccggctgta aaggaagtgt tatcaaaatt taggttccct      4500
     gaaaccttgg tcatggacca ggaaaagtca tttatgacgg gcgagctagt aaatttttat      4560
     aacaccaaca aaatcacgcc atatatcgtg gctactggtc gaagcgagat gaatgggatc      4620
     gtagaacgct tccattcgac tttgctagaa atttatcgaa taagcaaagc tgagaatcca      4680
     agtaaaaccc cacaagaaat catggacatc tcaataataa agtacaacaa caccattcac      4740
     tccactacga gacatacccc atacgaagta gtcattccca gctctcaaag ctcgacaata      4800
     tgtgaaaccg tttatagtaa cttgctggcg acacagacta aagacttgaa acgtcacaat      4860
     caaaagacaa aacatacaga aattgaagca ggaattgacg catacgaaaa gacaagacgt      4920
     agagtaaaaa cgaccccacg atataaaaag attaaaatag ctaaggttaa caaaagcaca      4980
     ataaaaacag atgacggtag acgtgtccac aaaaacgaca taaaaatcag gaaaatttga      5040
     ctgacaaact cccccctttt tcagactctc atccctactg acagaagcat ggacgttaca      5100
     catacaacga ctggaacaac ctattttcgt ctttgaccac ggaatgagca gattaaaata      5160
     ttcatcgtat cattacatcc accacttcag catagagtca ttaagaacac atgtcgtaga      5220
     tctcaggaat agatttgatg aaatagacaa aaatcaattc tcggaattta tactacaaaa      5280
     attcgatgaa attaatgagt atttaaaaag tataatccct attagaaggc aaagaagatg      5340
     ggatgctgta ggaactgttt ggaaatttat tgctgggtca cccgatgcaa atgatttaaa      5400
     attgattaac aatagcatta acaatctcat ctacaataat aacaagcaag tcaaaattaa      5460
     tagagaaatg actcttcagc taaaggaatc cgttttcaag actaaagaag ctattcagtt      5520
     attcaagaac aaatcctcag agctatattc aataaacatt ctctttaacc tcaaagattt      5580
     aagtgagaaa attggagata taatagatac gataatgtta gctaaattag ggattttaaa      5640
     tgaaaaaata ttgactaaaa atgagataga aatgttcagg aaagatttag agagggaaaa      5700
     tgtaactgtc cattcgtcag ccgaagttgt cacatatgcc actacttcaa tagccaccaa      5760
     ctaccaggag atcatactgc tcatcaaaat gccgaaattg gatcctcgag tttttcataa      5820
     gatccttgtt tgtccaacct tccataatcg acaacaaata cacacgacca agaagtattt      5880
     cttaatccac ccgtctgaaa aatttacagt ccacacgcta gaaccaacaa tttacaattt      5940
     ggaagatact gaagtagccg attcctcatg tatacccaat ctcttggacg gaaaagcagc      6000
     tgtctgcaac tacacatcaa accctatcca acaagagatc atttcaattg atacacacca      6060
     tatactggtc aacattgcaa aaaacttcac cttttcatcc gattgcagcg gttctgagag      6120
     gatcctatcc ggatcgtatt taatccagta cgagaattgc accatacaga tcaatggtat      6180
     cccatacaca agtcaaaccc gaaacattgc cggaaaaccg atatatctcc ctttggacgg      6240
     gataaccatt tctaaaaacg gagatgtttt gaacctcagc atggaacatc tccacaaact      6300
     ccagtcagaa acccgaaagg agttggatct acttcgcttg gaaaccaaca gcctacattt      6360
     tccacattgg ccactgtttg gaggaattgc catcctcccc atcataatcg gtattgctat      6420
     tttcttcagc attttcttcc ataggactac caagatcaag ctacagacgg taccaagcaa      6480
     caaggaacat catggagcac aggaacctag gcagagcgtg gaaaatttca aaaccttttc      6540
     catagtggat actatgaacc aggaggttca tctctaagga aggtcg                     6586
//
ID   Gypsy-457_AA-LTR repbase;    DNA;    INV; 265 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-457_;
KW   Gypsy-457_AA-I; Gypsy-457_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-265
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-265
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3064-3064 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 265 BP; 73 A; 61 C; 67 G; 64 T; 0 other;
     agttaacgcc ccagccaacc ggacttagca catttcatcg atggcaccac cgacgtcagc        60
     aatttgggtg ccctcggcaa cggcgacggc acggagctcg gtcagcagta tcatcgattg       120
     gcatcgaggc cagttgtagg gtgctgatat ggcattatta ggttaggtgg taggttacat       180
     taaggcaata aaacagttta agtttagtag tcaatcgact tggttctttt tttaaaaaga       240
     aaccccaacc gcgaaaacgc gaact                                             265
//
ID   Gypsy-458_AA-I repbase;    DNA;    INV; 4988 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-458_;
KW   Gypsy-458_AA-I; Gypsy-458_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4988
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4988
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3035-3035 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4988 BP; 1658 A; 971 C; 1068 G; 1291 T; 0 other;
     ttttggcgac gcaggaaaaa gtttcggacg attcaatcca attccatttc gttggcattc        60
     gctaatatgg cctggcctat ggtaagtata caggacaaat acgattttca aggagtggta       120
     cagtcccttg gggatgaaac gtacattcaa tgcagaatga agtcattttc aaagattaaa       180
     attcttaggg atgaatttac aatatgaagc ggaatgaaac ttcaattgta aacccagaat       240
     ttaggaacat ctttagaatt tgaattttca atgcaaatgt acgccccggg gaagagaaaa       300
     accactcagg gatggctctt gacagaatag ttttactatt gacaagaccc ggtggtcagt       360
     gaaaatttat aacaaagttg cggaaaccat agtaacggtg gagtacgcag tggcatgatt       420
     ttcaaaatcg ctcagggatg attctcgcaa aaatagtcaa ctattggagc aagacccggt       480
     gattgcagaa aatcattacg cggaaaccat agaaacggta tgtagtacgc agtaaaatgg       540
     aaaatatcat gcggaaccca acgttcaggg atgcagtacg cagaaatgta cagcggaacc       600
     taatgtatgc aatggagtac gcaggtatat ttaaagcgga aactaacaca ttaggatgaa       660
     gtacgcagaa attgaactaa taaagtacga gcggaactcg acgtttggga tgaagtacgc       720
     agaatgatag acatttcatt gcgtcattgt acatgccact aacgattagg cataatgttg       780
     aatgtgttca atttgaatcc taatgcactt gtttacaggt aaaccaattg attccaccat       840
     tttccgaaga cgccgatgga ccggtgtcgg ctcgctggga aaaatggcgt gaacagtttg       900
     aagcgtatct ggcgtggaga agcgttgatg atcatgacga aaaattcaaa acgttgatga       960
     tgtttggtgg accggacata cgcaaagtgg tcaaacaagt tcaagtcgac gaaaatcatg      1020
     ccgtggataa tcgttaccat gttgctatga cattactgga cgattatttc attcctaagc      1080
     tgtcgaaaac gtatgaacat caaaaatttc gtgagatgaa accaacaacg agtgaaaagt      1140
     ttgatacgtt tgtcattcgg ctgaaaaggc aggcggcata ttgcgactat ggtgatcaag      1200
     tagaaagcat ggtggtagac caaatcataa ccaccactgt ggacaagcac ctgaagagga      1260
     aatacctaga gaaggactac tctttcgaag aaattctgaa gattggacgt acccacgagt      1320
     ccgttcatat gcagattggg gaactggaca attcgaatgg aaatctacaa gcagtcagta      1380
     ctatcgagcc ggagggatca ggtagagagt ctatattgaa gatgcattcc aataatagtg      1440
     gaccaaggcg gttcagatgt ttccggtgta acggaagaca cgatccgaaa gacccatcgt      1500
     gtccggccaa gtcacttgag tgtaggagct gtggtcaaat cggtcatttt tcccgttgct      1560
     gtttcctgaa gaggaaaagg ttcaccaaac cgaaagtcca gtcaaaccgt ttcggattta      1620
     atcaaaagaa caaaaagttt gtacgagaag tatctgctag cagtggagcc caagaacagg      1680
     atgtagtgga tctttttcat cttggcaatg gaaaaagatt tgtgccaata tcagtcggcg      1740
     gtgtcaactt ggactttgta atcgatacag gagctgacga agacgtttta agtgaagctg      1800
     attggatcaa actcaaacga atcggattcg aagcatattc tgtaagaagg ggaagcaaca      1860
     agatgttcaa cgcatatggc tccaattcac cgttgaaagt tcttggtgaa gtgaacgcgg      1920
     cggcctctgt tggcggaaaa agcatcgata ctacattcta cgtaatccag aatgggaagt      1980
     gctcacttct ctcaggcgag acagcggtta agcttggact ggttaaattc ctacaggcag      2040
     tagatggtga ataattccca cacattactg gtaagcaata attttatttt cattttaatc      2100
     tgaataaatc aattctgaaa cacactatac aggcattgtc gcaaatatca aaattgataa      2160
     aaacatacct ccagtccgcc aaagcttacg tcgcattcca tttccgcttg aagaactagc      2220
     tttagagaaa ctcagagaac tcgagaggca ggacatcatt gaacgcgtca atgaggcctc      2280
     agagtgggtt tcgccaatgt tagttaaaag gaaaagcttc aatgaagtca gaattattgt      2340
     tgaccttcgc gaagcaaaca aagctattct aagagaagta catccgcttc caacactgga      2400
     gcagataact aagaaaattg gtggtaattg cattttcacc aaactcgaca tacgacaagc      2460
     ttttcatcaa gtacttctcc gaaaagaatg ccgttatatt actaccttca tttcccctct      2520
     tgggctgttc cgatacaaac gactcatgtt tggactttct gctgctccgg aattgttcca      2580
     aaaagtcatg gaaactatat ttgctgatat gccgtggcta attgtgttca ttgatgatgt      2640
     cttgatccca gccaaaaccg aatcagaact tcaaaaccga actgaaatag tcctcaaaag      2700
     gttgaaacag tataatgttc ttttgaacgc taacaaagtt gtctccagtt tgaaagaaat      2760
     tgattttttg ggataccata tctccgctca aggaatttct gtatcacaag agaaattgaa      2820
     agctattgaa aatttacaac cacccaagtc tgccgaagct gtacgaagtc ttctcggttt      2880
     agtcaatttc gttcatagac atattccaaa cttgtcaact attacctatc ctttgaacca      2940
     gctgactaga aaaggagttc ttttcgaatg gaaaccaatc catcaaaaag cgtttgagct      3000
     gatcaagacg tcattattaa acagacatac tcttggcttt tatgacgtaa atgatgagac      3060
     ctttgttatt gctgatggaa gtcccgtagg tcttggagcc gtactaatac aaaaggacaa      3120
     aaacaatcaa agccgtgtga tatgttacgc ctctaagaca ttaactccag tagaacaaaa      3180
     atatgcccaa actgagcgag aagcggtggc actggtatgg gcttgtgaaa aattttacta      3240
     ttacctttac gggaaatttt tccatttagt aacagatcac aaaccactgg ttgtgatttt      3300
     tggagatcga ctcaaaccat ctccaagaat agaacgttgg aagttacgat taatgtccta      3360
     tgacttcaaa gttatgtatc gtccagggaa aaaccaacat agctgatcca ctatcacggc      3420
     tttgccagtc tgtaccagat actggcctta gcttcgatga agaatccgaa cggatcatac      3480
     gtatgctggc tagcgattct tgtccagtag caataacact taaggaaatt ataactgcaa      3540
     ccagttcgga cgacgaactg cgagaactta tgaaatggtt accctatccg cctcgaagat      3600
     ggcctaagac attatcacgg tattccaaat tggcagacag tttgaccacc gatggaagta      3660
     tattactgaa agatgaacga attgttatcc ctcgaaaact tcaaaatcaa atgttgcgat      3720
     tagctcacga gccgcatatt ggaatttctg caatgaagcg tcgattaaga tcgaaagttt      3780
     ggtggacaag aatggactct atggtggaga actttgttca atcttgtaca ggttgtacat      3840
     tagtatccgt tcctgatacg cttccattga caagaattga aatgccaaat agtccgtggc      3900
     aaaagttagc agcagatttc atggagattc ctggcggtta tcatttacta gtaatcacag      3960
     actattactc tcgatatgta gaggttgcaa ttcaaacatc tataacagca agagcaacaa      4020
     tcacgaaaat gagggaaata ttcgcgagat ttggatatcc attagaaatt gtctgtgaca      4080
     acggtcagcc gtatgcttca gatgaatttt ccagattttg taccaccaac gcaatcagta      4140
     tcaatcatac agttccctac gcggcttttc agaatgggtt agttgaaaga cagaatagaa      4200
     cactgttgaa aacattgaaa atcagttgca cgatgggacg aaattggcgt gatgatcttc      4260
     aagatttcct gcactcttat cgagcaacac ctcacagtac aacacaatat tcaccatctg      4320
     agttactgtt tggctggaac attcgtgaca aattaccagg aactacaaga ccagtcagca      4380
     tcaacaaagc aaaggaaaac gacaaaagct caaaggaaaa aggtagagtg tacacagatt      4440
     acaaacggaa agcaaaaccg aataatgtcg atgtgggaga ttacgtagta gtgaaaaatt      4500
     tcataaagaa aaataagttg accacgacat tccatccgga tccacatctc gtaatacagc      4560
     gtgacggatc aagattacac ttgaaaaaca caaaaacagg tgttatctct aaccggcatg      4620
     taaaccacac gaagcgcata ctaagtgcaa accctatgtt gaacgatgag aaatttgaag      4680
     gtaaaaacaa aatataattt ggcatacgaa gcagttttcg tttcaggttt attttcagag      4740
     gaatccacaa tgacgtcaga aatcaaaagt cctgccatta tgtcttccaa gaatcccttg      4800
     gaatcaacgg gaaatactgg agaaccaacg accacagtag ctggacgaat cgcaccagac      4860
     aagagtcata agcgacctat ggaacccctt cgtagctctt ctaaacgatc gaagcatcta      4920
     ccgaaacatt tattagaata taaactttaa ataaatacat ttaaactttg ttaaacgtag      4980
     ggagggga                                                               4988
//
ID   Gypsy-458_AA-LTR repbase;    DNA;    INV; 98 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-458_;
KW   Gypsy-458_AA-I; Gypsy-458_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-98
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-98
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3065-3065 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 98 BP; 34 A; 18 C; 15 G; 31 T; 0 other;
     tgtaggatct aagcaatcca tgatttataa tatgtctagc ttccgtgaat aaagattcat        60
     tataagttgt tccacaaacc agaacagacg tctttaca                                98
//
ID   Gypsy-459_AA-I repbase;    DNA;    INV; 4000 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-459_;
KW   Gypsy-459_AA-I; Gypsy-459_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4000
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4000
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3036-3036 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4000 BP; 1123 A; 935 C; 913 G; 1029 T; 0 other;
     ttggtgaccc cgtctgtgta ctcgatagtc ggaaatccag aatttcctcg cgaattatcc        60
     ggtaaaacgg gcttaatcgg atcgccggtc gaatcgaaaa atctccgcca ttttggtttt       120
     gctttttgtg ttgcgttaac catgaacacc gaagctacaa catcaacaac ggcaaccaca       180
     actacagcga cagctacttc ggcatccgtc gcggttaagt tgccagattt ctggaaatct       240
     gaccctgcga tgtggtttgc acaagccgag gcccagtttg tcctggctgg tgtgacccgc       300
     gatgaaacca agttttatca tattatcgcc aaggtggacc aaacagtctt gtgccacatt       360
     tcggatctcg tagcaaatcc acctcagacg aataagtacg atgctatcaa ggaaaggctc       420
     ctgaaccgct tcgaaatgtc acctcaagca aaaatggaaa aattactcaa ttcctgtgat       480
     cttggtgaca tgaaaccaac ccatttgctt gccaagatgc aggatctggc agctggtttg       540
     agagtcgagg aaaacctgat gaaaatgcta ttcctgcaaa gacttccaca aaacattcga       600
     tcagtgctcg ctattcatga tggtactctt tccaagttgg cggagatggc cgacaaaatg       660
     ttggaatcaa cgtttccgaa cgtagcagca gctacagtac caacatcaac agcggttccc       720
     aatcaagaag aactaagcga acagattgcc tttctcacag ccgagatccg taagctcaaa       780
     tcagccggta gaagcagaag ccgttctact tcgcgtgctc gccgtgtgtc tgagtctgat       840
     caagcagaaa catgttggta tcatcgagtg tacggtaacc gagctcgtca gtgtcgttcg       900
     ccttgcagat tccagctgaa gtcaaaaaac tagacgattg cccatctcgt acggcggggg       960
     tgggtgcgag tcaaagccgt cgcctgctga ttcgtgacaa taccaacaac attcgcttcc      1020
     taattgacac gggatcggat gtatcaattg ttcccgcgac atcgaaggat aggaagaaac      1080
     ctccaacaaa tttcgtgctc catgctgcca acaacacgtc catcaagacc tacgattctc      1140
     gttttttgta cgttgatctt ggattgcgaa gaaggttttc atggagattc cttgtggccg      1200
     acgttacgac tgcgattatt ggagcagact tcctgtcgtt tttcgcattg agtgtgaacc      1260
     tgaaaaatag acgcatagtc gacgaaacta cgaagctcac ttcaaccgga ggaatggttt      1320
     ctccgactct gttcggggtt acaacagttg actacaacca tccttttcgt aagttgctgg      1380
     aaaattatcc ggaaataact cgtccttgta cgatgcgtat ggaggtgagc cacaacgtca      1440
     cgcaccatat agtgacaaaa ggaccgcctg tggctagcaa agcacgtcgt ctaccaccag      1500
     ataaactgaa agcggctcaa caggaatttc agttgatgat ggaattgggt atctgccgtc      1560
     gatcaagcag cagctgggct agtccactgc actgcgtgcc caaaaagaat ggacaacttc      1620
     gcttcgtggg tgattaccgg cggctgaatc atgtaaccgc cccggataag tatccggttc      1680
     cgcacataca tgatctactc aactcgttcc atggtaagtc aattttcagt actctggatt      1740
     tagaaagagc ttaccaccaa attcctgttg aaccaggtga cgtgcataaa accgcagtta      1800
     ttaccccgtt cggcttattt gaatttaccc gcatgcagtt tggactatgc aacgcggggc      1860
     aaacgtttca aagatttatg cacaagctct tcggtgacct cgaatttgtc gtcgttttta      1920
     tagacgatat atgtatcgcc tcctcttctc ccgaagagca cgttgagcat atgcgcatag      1980
     tttttgagcg actccggtcg aacgggctag tcatcaattt acaaaaatgc aagttcgctc      2040
     aagaggaagt agaatttatc ggatacatcg tcagcaaaga tggtgtgcga cccgtggcag      2100
     atcgtgttgc ggcggtaatg aagttcgaac gtccggaaac cgtaaaggag ttacgtagat      2160
     ttctggccct cgttaatggg tacaagcgtt tcattcgaca agccaccgac atgcaatcag      2220
     cgttaagagc acttattccc ggaaacagaa aaaatgatac caggaggatt gtttggaatg      2280
     atgcagctca agcttcgttc gacgattgca aaaatgcgct tgcaaatgca actctcctat      2340
     attatccaga tccagagaaa ccattggggc tgatggtgga cgcttcgaat actgctgctg      2400
     gggcagtttt gcaacaattt tcaaatggat tttggcagcc tctgggattt tattcggaaa      2460
     agttcaattc agctcagcaa agttattcga catttggacg agagttaatg gcaacgaaga      2520
     tggctgtgaa gtattttcga tatcttctgg aaggacggaa attcacgatt tatacggacc      2580
     acaatccttt gacgcacgcg ctcacgtcga attcaacttg tcgtctccat cacgaagaac      2640
     gagctctgca gtatatttca cagtttacca ccgatatcca gcatattagc ggaaaggaaa      2700
     acacaaccgc cgacgcttta tccaggatgg ctgcaatcag atgtccgtcg tcggtagact      2760
     acagtgaaat tgctatcgat caggaaagcg atgatgagct tctgatgcta ctaaagtcca      2820
     aaactacctc tctacgtttg gagcccaagg cattgaatgg atgttcaaag ccgctgttct      2880
     gcgatacttc aactaatttg aatcgaccgt tcgtcccaaa acaacatcgt aacgcaataa      2940
     tggttcatat gcacggaatt tcacatccag gaatacgtgg aactcgcaaa ttggtatccg      3000
     aacgttttgt atggccacat atgaataccg atatttcgaa attcgtaaaa acgtgtatct      3060
     catgtcagat gtcaaaggtc catcgtcata ccgtttcgcc tttcagttct ttcgaactac      3120
     ccaaatctcg ttttaatcac attcacatag atttggttgg acccttgccg caatcaaatg      3180
     gacactccta tctcctcacg attgtggatc ggttcacgaa atggccagaa gctgtaccgc      3240
     tagtcgacat gactgcccat tccgtggcaa cagctttgtg ttcgcagtgg atctcaagat      3300
     ttggttgtcc agaattcata acatcagatc aagggcggca gtttgagtcc gaggtattca      3360
     aagaactgtc atctatactt ggagcaacac gctgtcgaac aaccgcttat caccctcagg      3420
     caaacgggct ggtggaaaga tttcacagac aacttaaagc agcaatcaca tgcgttgatt      3480
     cgaaaaactg gtacttcaga ttgccaatca tattgctcgg acttcgctca gcctatagag      3540
     aagatatgaa atgttcccct gctgatctag tgtacggcca aggactgcga gtaccaggtg      3600
     agtttttcga tgcgccaaag gaatgcaacg atcgcacaga tttctccaag atgctgcatc      3660
     atgtcttcga taatctccga cctgttgaaa catcaaatca ttccaagaag aaagtttttg      3720
     ttaataaaga attgatgaaa tgcacacacg tgtttgtgcg agtcgacgca gttaaaaagc      3780
     ctctgcaaaa gccttatgaa ggaccatacg aagttctaca ccgagacgag aagttcatgg      3840
     acgttttaat aaaaggcaaa tcgcaacggg tttctattga ccgattgaaa ccagcttatt      3900
     tgtctaaaga gtctgcatcc gatcaacaag gcgatcggaa ggttttagtt acaccatcag      3960
     gacaccggtg agattcatgg tgtaactagg aggggggtag                            4000
//
ID   Gypsy-459_AA-LTR repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-459_;
KW   Gypsy-459_AA-I; Gypsy-459_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-182
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-182
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3066-3066 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 182 BP; 52 A; 40 C; 37 G; 53 T; 0 other;
     tatggggatg atacacccct ggttgctatc gttcaacttt gttagttcgg agaaaagaga        60
     aaaataaaca gaacagtttt gagagtaaac gcgtcgagtc atatattttc ccgttggttg       120
     atctcgtccg aaatataacc gtagatcgcc ctttattaat tcctccgatt ccgcgcacca       180
     ca                                                                      182
//
ID   Gypsy-45_AA-I repbase;    DNA;    INV; 5053 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_AA_;
KW   Gypsy-45_AA-LTR; Gypsy-45_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5053
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions  995250 1000302.
XX
CC   Positions [2237-2659] - Reverse transcriptase
CC   Positions [3794-4264] - Integrase core
CC   'ATCAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1130..4894
FT                 /product="Gypsy-45_AA-I_1p"
FT                 /translation="MRTYSPNMVGKSFSKLAQVYDHVKNSHHHVESEEPGR
FT                 RPIKARLGYKQPYRGQFDYKFRNRNQTENRHPRDWRRDDGRQPSRYADLIC
FT                 DFCGIKGHIKRKCFKLKHLQKGAVNLLQTSEPEPSVDRHLSELLDRMNARD
FT                 SDSDSELDEGNYACNLVTFINKISNPCLVDVIVEQKNIKMEVDCGSSVTVM
FT                 NKSQYFSNFEKKLKKSSKQLIVVNGAKLLIEGETSVLVNYRGVESKCKLLV
FT                 LNCSNDFTPLLGRDWLDIFYPNWRNYFITQSMVNNVSEGRCTEYVNEIKQR
FT                 FSNVFTKDFSSPIVGYEADLVLKNDVPIFKKAYTVPYRLKNRVCDYLMKLQ
FT                 KEKVITPVKTSEWASPVIVVMKKNDDIRLVIDCKVSVNKYIIPNTYPLPVA
FT                 QDLFASLAGSKVFCALDLEGAYTQLSLSERSKQFMVINTIKGLFTYNRLPQ
FT                 GASSSASIFQQVMEQVLEGIENVCVYLDDVLIAGKDLEDCKCKLVIVLERL
FT                 EKANIKVNLEKCKFFVENLDYLGHVISNNGLLPCKDKLDTIKNAKNPVNVT
FT                 ELKSFLGLINYYNKFIPHLSSKLYHLYNLLRNGVKFVWDENCQKAFEKCKS
FT                 SLINADFLEFYDPNKPIVIVSDASSYGLGGVIAHIVDGVEKPIGFTSFSLN
FT                 DAQKSYPILHLEALALVCTVKKFHKYLYGQKFQIFTDHKPLVGIFGKSGRN
FT                 SIYVTRLQRFILELSIYDYDIQYRCSAKMGNADFCSRFPLDQNIPAEYDHD
FT                 LVRSINFSKDLPIDFTVIANETKHDKWLQTIISFLKNGWPEKLEKSLIDVF
FT                 SNQHDLELVDGCLLYQDRVVIPQKLQKNILKLIHANHLGMVKMKQVARRSV
FT                 YWFGINTDIEKLVSNCDVCNSMAIVKKPKIESRWIPTVRPFSRIHIDFFHF
FT                 SHHTFLLIVDSYSKWIEVEWMKKGTDCGQVLKQLVAFFARFGLPDVIVSDG
FT                 GPPYNSYAFVNFLEKQGIKVFKSPPYNPPSNGQAERLVRTVKEVLKKFLID
FT                 SDLSHLSLEDQINLFLINYRNTCVTKDDSFPAEKIFTYKPKTLVDLLNPKK
FT                 HFLKQLVPQSDDNDDSVHPLGEGCVSKGSVDPLDALSEGAELWYKNNNPNN
FT                 NLRWIKSHFIKKYSKNVFQIQIGSAVLHAHRNQLRVCKAVGDLPRPNFFVQ
FT                 RESQIQQEGRRGTQQDGRHEKESMVSIRNEGGMVPQANEVRSEEDSSNQAS
FT                 TRCSSAHSNHSRKRKLQESASMPNATPRRSKRKRFLKMDSDFMYT"
XX
SQ   Sequence 5053 BP; 1637 A; 769 C; 1130 G; 1517 T; 0 other;
     gtggcggcga gataaaggac tacgatttgg acacgtttgg atttcggcta acaggagaaa        60
     aaaaggattg gtaaacggac aaggctacga aaaaggatct tctaaggaca acggaatatt       120
     tgtgaacgct agtggtaacg ttggagagcc gaagtaacgt ttcccttcag ctaaggattt       180
     gtaaaaacgc gtgtggtgaa aagcagaaaa tccgtggata cgcttgaaat ctaccggagt       240
     gagcggagtc cagtggttga tccggtgtgg atcgtgttct tgtgtgagct atagagaacg       300
     tttttttaaa agaggtccga acaaactgat tttgtaggag cttgcggctc cgagtagcga       360
     gaatccttcc cgactggttt caaaggtaca tacgaggtcc cgttcgaggt catcttactg       420
     ctgtggtgcc ttttttcact gtagcagaaa tagcgaagat accggtgagt caaaaagttt       480
     tttttatcat ttgtttcttt gcctaattga gttgtctttt ctcggttttt ttgtttggaa       540
     aataattaca ttgtaaaaca acaattgaaa taattaaaag ggcatagaca atggcttcta       600
     tggcagttac tattgagcca taccgtaaag gttgttcctt tgcagactgg gtagaacgct       660
     tagaatattc ttttgtcatt aatgcgatta cggatcagaa caaaaaggcg tatctaattg       720
     cattaagtgg acctgtaatt ttttcggaac ttcgtttgct ttacccaagg gaaagcttgt       780
     ccgaggtctc ttatccggat atggtggcta aattaaaagc ccgattggac aagactgaat       840
     cagatttggt tcaacgcatg aaatttaatt ctcgggtgca acaacccgac gaaacggcag       900
     aagatttcgt gctttcgtta aaacttcaag ccgaattctg ttcgtttggt gaatttaaac       960
     aagtggcaat tagagataga attttggcgg gtttgagaga tggcgcttta agacaacgtc      1020
     ttctcaatga agaaagctta actttacaaa gtgcggagaa actcattgcc acttgggaaa      1080
     ttgcgggtga aaatatactt caggaaatac ttctggactg attgcatcaa tgcgtaccta      1140
     cagtccaaat atggttggga aaagttttag taaattggct caggtttatg accacgtaaa      1200
     aaatagtcat catcatgttg agagtgagga gccaggaagg aggccgatca aggctagact      1260
     aggctacaag caaccatacc gaggtcaatt tgattacaaa tttaggaaca gaaaccaaac      1320
     ggaaaatcgc catccgaggg actggcgcag agatgacgga aggcaacctt caagatatgc      1380
     agacttgatc tgtgactttt gtgggatcaa gggtcacatt aagcgtaagt gctttaagct      1440
     taaacactta caaaaaggag cggtaaacct tttgcagacg tcggagccgg aaccaagtgt      1500
     tgatcgtcat cttagcgaat tactggacag gatgaatgct agggattcgg acagcgacag      1560
     tgaattagat gaaggtaatt atgcatgcaa cttagtgacg tttattaata agataagcaa      1620
     tccgtgtttg gttgatgtga ttgttgagca aaaaaatata aaaatggagg tggattgcgg      1680
     ttcatcagtg actgttatga ataaatctca gtatttctct aattttgaaa agaaattaaa      1740
     aaaaagttca aagcaattga tagtggttaa cggagcaaag ttgttgattg agggagaaac      1800
     gagtgttttg gtcaactata gaggggttga gagtaaatgc aaattgttag tactgaattg      1860
     tagtaatgat ttcactcccc tgctgggacg agactggctt gatatatttt atccaaattg      1920
     gagaaattat tttataaccc aatcaatggt taacaatgta agtgaaggac gatgcactga      1980
     atatgttaat gaaattaagc agcgattttc gaatgttttt accaaagatt tttcgtcacc      2040
     catagtgggg tatgaggcgg atcttgtttt aaaaaatgac gtaccgatat tcaagaaggc      2100
     ctatacggtt ccttatcggc ttaaaaatag agtttgtgac tatttgatga agttacagaa      2160
     agagaaggtc ataacacctg ttaaaacaag tgagtgggct tcccctgtaa tagtagttat      2220
     gaaaaagaat gacgatatac gtttagtcat agattgcaaa gtttctgtta acaagtacat      2280
     aataccaaac acatacccat tacctgtagc tcaggattta tttgctagtt tggctggaag      2340
     caaagttttt tgtgcattgg atctagaagg ggcttataca caattgagtt tatcagaaag      2400
     gtcaaagcaa tttatggtaa taaatacaat taaaggttta tttacatata acagattgcc      2460
     acagggagct tcatcaagtg cgtcaatttt tcagcaggtc atggaacaag ttttggaagg      2520
     tattgaaaat gtgtgtgttt atttggacga tgtgttaatt gcgggaaaag atttggaaga      2580
     ctgcaaatgt aaattggtta ttgttttgga aaggcttgaa aaggcaaaca ttaaggtaaa      2640
     cctagagaaa tgtaagtttt ttgtagagaa tcttgattat ttaggccatg ttattagtaa      2700
     taatggttta ctaccatgta aagataaatt agacacgatt aaaaatgcaa aaaatcccgt      2760
     taatgtgact gaacttaaat cattcctagg tctcattaac tattataata aatttattcc      2820
     tcatttatct tccaaacttt atcatttgta caacctgctg agaaatggtg tcaagtttgt      2880
     ttgggacgaa aattgtcaga aagcgtttga aaaatgtaaa agttcactga ttaatgctga      2940
     ttttctcgag ttttatgacc ctaataaacc aattgttatt gtcagtgacg cttctagtta      3000
     tggtttgggg ggagtgattg ctcacattgt ggatggagta gaaaagccaa taggttttac      3060
     ttcttttagt ttgaatgatg cccaaaaatc gtaccctata ttacatttag aggctttggc      3120
     tttagtgtgc acagttaaaa aatttcataa atatttgtat gggcaaaagt ttcaaatttt      3180
     tactgatcac aaaccacttg tgggaatttt tggaaaatct ggcagaaact caatttatgt      3240
     cacccgactt caaagattta tcctagagtt gtcaatttat gactatgata ttcaatacag      3300
     atgttctgct aaaatgggaa atgcagattt ttgctctagg ttccctttgg atcaaaatat      3360
     accggcagaa tatgaccatg acttagtgag gagcataaat ttcagtaagg atttacctat      3420
     tgactttaca gtaattgcaa atgagacaaa acatgataaa tggctccaaa caataataag      3480
     ttttttaaaa aatggttggc ctgaaaaatt agaaaaaagt cttattgatg ttttctccaa      3540
     tcagcacgat ctagaactcg tagacggatg tcttttgtat caggaccggg ttgttattcc      3600
     acaaaaacta cagaaaaata ttttgaaatt gatacacgct aatcatttag ggatggtgaa      3660
     aatgaagcag gtggcgagac gatcagtata ctggtttggt atcaatacag atattgagaa      3720
     gctggtttca aattgtgatg tgtgtaatag catggctata gtgaagaaac caaagattga      3780
     gtcacgatgg attccgacag taaggccctt tagtcgaatc catatagatt tttttcattt      3840
     ttcccaccat acctttttgt tgattgttga tagttattcg aaatggatcg aggtagaatg      3900
     gatgaagaag ggtacggatt gtggacaagt tctaaaacaa ttggttgcat tttttgcacg      3960
     atttggttta ccggacgtga ttgtgtcaga tggagggcca ccctacaact cgtatgcgtt      4020
     tgtgaacttt ctggaaaaac aaggaattaa agttttcaag agcccaccgt ataacccgcc      4080
     tagtaatgga caagcagaac ggcttgtaag aactgtgaaa gaagttttga agaaattttt      4140
     aatagactca gatctttctc atttatcgtt ggaggaccaa atcaatcttt ttttgattaa      4200
     ttatagaaat acctgcgtga ctaaagacga tagctttcca gctgaaaaaa tatttacata      4260
     taaaccaaaa actcttgttg atttgctaaa tcctaagaag cattttttga aacagttagt      4320
     accacaaagc gatgataatg atgatagtgt tcacccgtta ggtgagggat gtgtttccaa      4380
     gggatcggtt gatccacttg atgctttgtc tgagggagcc gaattgtggt acaaaaataa      4440
     caatcctaac aataatcttc gttggataaa atcacatttt ataaaaaaat attcaaaaaa      4500
     cgttttccag atacaaattg gaagcgcggt ccttcacgct catcgcaacc aactgagggt      4560
     atgtaaggcc gttggcgatt tgccaagacc aaactttttc gtgcaacgcg agagtcaaat      4620
     tcaacaagag ggccgaagag gaactcagca agatgggagg catgagaaag agagcatggt      4680
     gtctattcgt aatgaagggg ggatggtacc ccaagcaaat gaagtgcgtt cagaagaaga      4740
     ttcgtcaaat caagcaagta caaggtgttc aagtgcacat tcgaatcatt ccaggaagag      4800
     gaaacttcaa gagtcggcgt caatgccgaa tgctactcca aggagatcga aaaggaaaag      4860
     atttttgaaa atggatagtg attttatgta tacatagaat taagatcaaa agagaagttt      4920
     taaagtgaat tttgttaggg atctattttg ctaccaagct ttcgaattaa atttgattat      4980
     aattattagt agtcattcga gttgtttaat tgcataagtc tgtatgtatc attgatctta      5040
     aggatggaga act                                                         5053
//
ID   Gypsy-45_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_AA_;
KW   Gypsy-45_AA-I; Gypsy-45_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions  995017  995249.
XX
SQ   Sequence 233 BP; 77 A; 42 C; 48 G; 66 T; 0 other;
     tgttgtgttt agctcgagta gatcgaacta attttagagt gtctgatctg tgaacgcatt        60
     ccgatgtaaa aggaagaact ggcatcattg taaactacaa tatcgaaagt tgatgaaatg       120
     actaaatgag agaccgaagt ctcattcgtt aagtggatac caagctactc agatcacttt       180
     tccctaacaa gagaaaatac ctctaagttt gacctcaggc tcgggattta aca              233
//
ID   Gypsy-45_AnFu-I repbase;    DNA;    INV; 5544 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5544
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2929-2929 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1148..2185
FT                 /product="Gypsy-45_AnFu-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MPRKSVKLGWVVEDSESATSSSIIKNAPDLGSTVLPS
FT                 ISFATLQIGECKPIEGEEEIDRINFLRWCDILESGMAVSGIKDEETKSNIF
FT                 KMKAGSKLLDILDNTPDKGAPDAHLQPFSNAIHRLRQYFGSRDYLLLQRQK
FT                 LRAMPQGAQETDLKYVQRVTAVARLCNYGDEQLVEIVADVIQSHATNRKIR
FT                 EVARKAARKGNSLQDLIDRVRASEFEKQAEDIFTKHHPPEESRSLFAVATA
FT                 TPRSASGGFRGREYIRNRSEFSRVGDTRKPCWRCTSVTHRAEECFALEKIC
FT                 HLCHTKGHIQRACTATRYKREASAASSSAGSKIRKIDVLPATKDEDAIMKV
FT                 VSE"
FT   CDS           2296..5490
FT                 /product="Gypsy-45_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NTFHSTTEPVTNTTLEEAFPEYIMCSVDTLTLEQSGS
FT                 IIGSVAGISVRFLIDSGAEVNTIDETVFNQLLQDPVSHPIYSVTSGTDKPL
FT                 RAYASSKPIVVVATFVAELVISSDRPRTLEKFYVVPKAKALLGRTTATRYS
FT                 VLQLGLCVPVTNVKETSSDSLDGQVYTLGAQVQFPRFNVPPVSLCYEQKMP
FT                 PSRHVFTNIPPAFKLEVERRLSNLLSTDIIEKVSPDMDKSFCSSLLVVPKG
FT                 KQDIRLVVDLRGPNRSIIRTPFRMPTLDEILSHLHGARWFSTIDLTNAFFH
FT                 IVLEESCRHLTNFFSGSDTYRFKRLPFGLCNAPDIFQETLQTVVLAGCKGT
FT                 INYLDDILVFGKSKEEHDDNLRIALSRLEEHNVSLNRSKCNFGKQSVKFLG
FT                 FLLSHDGWRVDDDKRKAIEGFRRPEKISEVKSFLGLINFIERFTPCRADKT
FT                 EHLRALANSKEFHWSDAEEFEFNNIKNVALNSIEKLGYFDHRDKTELFVDA
FT                 SPIGLGAVLVQFDSVDAPRIIACISKALTSAEKRYPHTQKEALAIVWAVER
FT                 FSYYLTCTNFTVWTDSEANKFIFGSQFRSGKRSITRAETWALRLLSFNFVI
FT                 KRVPGNLNIADVLSRLIDESQIDEPFDDNNDRHMLYLLDSTHMSISWSEIQ
FT                 LASEEDQELSDVKTCIQTGKWPAHLRKYECLAKQLRCLDSLVFKDELVILP
FT                 TSLKKRVLATAHEGHVGIGATKRILREHFWWPGISKEAEQFVKNCATCLLI
FT                 ARRNPPVPLSSRELPKGPWEIIQIDFLSVLGCGSGHFLVCVDTYSRYLNVT
FT                 EVKHTDSNSTNVALSKIFKTWGFPLVIQSDNGPPFKSAEFINFWEEKGVSI
FT                 RKSIPLSAQSNGAVERQNQGIIKALAAAKVEKRNWNEALQEYVDVHNTRKQ
FT                 HSRLGVTPFELLVGWRYRGTFPSLWVEEKSVDRDTVRENDAHAKLISARYA
FT                 DSKRGAKDSFIQVGDKVVVAVLRNSKTDPSFSKEKFTVLARDGAKVVIRSD
FT                 SGIQLSRNVRDVKKVPVDLINADVILDSTNQTTPDDFDNTQRPRRILRKPA
FT                 WLDDMDLY"
XX
SQ   Sequence 5544 BP; 1663 A; 1079 C; 1216 G; 1584 T; 2 other;
     atggcgcagt tttgtggttt taaacctacg cttccatagt tagttgttaa atgtgagggg        60
     ttgttgtacg cccatcatag tccaataaat ggttagttag taaattgagt acaaacgggg       120
     agatacgacg taatgcacat ttcaatatga aatcgatgcc ggacctagga tcaacgaaga       180
     accaatacgt atgcacaatt cttaaatgma ttagatgtca atatcacgca cattcccata       240
     cggaatcgat gccgaccaca cgtacattcc tttggggaat cgatacgaat gcacaattct       300
     tgtaagaatt cgatgcccac atcacgcaca ttcctttaga gaatcgatgc cgaccacacg       360
     tacattcctt tggggaatcg atacgaatgc acaattcttg taagaattcg atgcccacat       420
     cacgcacatt cctatagaga atcgatgccg accccacgta cattccttta aggaatcgat       480
     acgaatgcac aattctggaa ggaattcgat gccaacgtta caaatattta tgtatgcaat       540
     cggcgcattg caggaaatcg ttagtagagt ccagttcttc gtataatcgg ttgcgatcta       600
     ataagtatgc gtgtggagag tagacgcttt atgttaactc ggtatgtgtg cgatctgttt       660
     gatcccatac gtatatagat gtgtggtaca aacaggatta ccatacgaaa acatcgtaga       720
     attgtgacac cgtgctataa acatcgaaca gctccacaag gtaaatatat agtgatacgc       780
     actctgagta tcataatagg catttatttg cataacgacc gcgtaggtaa attattattt       840
     ttattttcca atagtttttt tamtcgtcgc ttaaaataaa ttaaattaaa aaaaaagaaa       900
     agaaagaaag agatcctcgc aaacgtaata taccagattg tgaactgaca tcagcacgaa       960
     cgagcaaatg cgagatcacc ttatccagga tattttattg atcttgtcaa taacccgttg      1020
     ctataaattt taactataat gctgctcgct tgattttaca ccattttgtt ttgtaaagtg      1080
     cttgtgcgat tcagacagaa tagacgcgtt gtagaaattt ttcgataaag ttacaaattt      1140
     tgcaattatg cctcgcaaat cagtgaagct cggttgggtt gtcgaagaca gcgaatcagc      1200
     gacatcatcg tcgattatta aaaacgcgcc ggacctagga tcaacggtac ttccttcgat      1260
     ttcattcgcc accctccaaa taggtgaatg taagccgatt gaaggagaag aagaaattga      1320
     tcgaatcaat ttcttgagat ggtgtgatat tttggagtcg ggaatggccg tatccggaat      1380
     aaaagatgag gaaacgaagt ctaacatatt caagatgaag gcgggatcta aactcttgga      1440
     tatactagat aacacacccg ataaaggtgc tcctgatgca catttacagc cattttccaa      1500
     cgcgattcat cgtctccgcc agtactttgg ctctcgggac tatctgttac tacaacgcca      1560
     aaagcttcga gcgatgccgc agggagctca agagacagat ttaaagtatg tgcaacgcgt      1620
     tacagccgtt gcaaggcttt gtaattacgg tgacgagcag ttggtagaga ttgttgctga      1680
     cgtcatacaa agccatgcca caaatcggaa gattcgcgaa gtcgccagga aagcagctcg      1740
     taagggcaat tcgttgcagg acctcatcga tcgtgtacga gcttctgaat tcgagaagca      1800
     ggcggaggac atttttacaa agcatcatcc gccagaagaa tctcgtagtt tatttgcggt      1860
     agcaactgct acccctcgtt cagcctctgg tggttttcgt ggtcgagaat acatcagaaa      1920
     tcgtagcgaa ttttctcgcg ttggagatac acggaagccg tgttggcggt gtacaagtgt      1980
     tactcatcga gcggaagaat gtttcgccct cgagaaaatt tgtcatctgt gccataccaa      2040
     aggtcacatt cagcgtgctt gtacagcgac tcgctacaaa cgtgaggcat ccgctgcatc      2100
     gtcatccgct ggatccaaga ttcggaaaat cgacgtactt ccagctacta aggatgagga      2160
     tgcaatcatg aaggttgtta gtgaatagta tctttctctt tgatccagtt ttgaattaat      2220
     aaatattgaa ttcgataatg tttgaacttc atcagaatta atgaataacg ttaaaaaaat      2280
     attttcctct tttagaatac atttcattcg acaacagaac cggttacgaa caccacatta      2340
     gaagaagcat tccccgagta cattatgtgt tccgtggata cacttacctt ggaacaatcc      2400
     ggttcaatca tcggatcagt tgcaggaatc tcagtgcgat tcttaatcga ttccggagcg      2460
     gaagtcaata ctattgacga aacagttttt aatcagttgt tgcaggatcc tgtatctcat      2520
     ccaatttaca gtgttacgtc gggcactgac aagccattga gagcgtatgc ttcatcaaaa      2580
     ccaattgtag ttgttgctac ttttgttgct gagctagtta tatcgtctga ccgtcctcgc      2640
     acacttgaaa agttttacgt ggttcccaag gcaaaggcgt tgttgggacg cactactgca      2700
     accaggtata gtgttttaca gttgggatta tgcgttccgg ttacaaatgt gaaggaaaca      2760
     agttcagatt cattagatgg tcaagtctat accttaggag cacaggtaca gttcccaaga      2820
     ttcaatgttc ccccagtgtc tctctgctat gagcagaaaa tgccaccatc aaggcacgtt      2880
     tttactaata ttccgccagc ctttaaactt gaagtagagc gtcgtttgtc taacctatta      2940
     tcgacggaca taatagagaa agtttctccg gatatggata aatcgttttg ctcatcacta      3000
     ttagtcgtac cgaagggcaa acaggacatt cgtttagtgg tagatttgag aggtccaaat      3060
     cgttctatta taagaacacc cttcagaatg cccacgttgg atgaaattct ttctcacctt      3120
     catggtgctc gttggttttc tactattgac ttaactaacg cttttttcca catagtgttg      3180
     gaagagtcat gtagacactt gacaaatttc ttttcaggaa gtgacacata tcgctttaaa      3240
     cgtcttccat tcggtttgtg caacgcccca gatattttcc aggaaacttt gcaaacggtg      3300
     gtattagccg ggtgtaaagg tactattaat taccttgacg atattctggt tttcggaaaa      3360
     tcgaaggaag agcacgacga taatcttcgg attgcgttat cgcgactgga agaacataat      3420
     gtctctctga acaggagtaa gtgtaacttt gggaaacaat cagtaaaatt tttgggattt      3480
     ctcctttccc acgacggatg gagagttgac gacgataagc ggaaagccat cgaaggtttt      3540
     cgacgtcccg aaaaaatatc agaagttaaa agttttttgg gattgattaa ctttatcgag      3600
     agatttactc catgtagagc cgataagacg gagcatttaa gagcattggc gaactctaag      3660
     gaatttcatt ggtcagacgc agaagaattc gaatttaaca atattaaaaa tgttgcgctt      3720
     aattcaatcg agaaattggg atatttcgat cacagggata aaacagagct cttcgtggat      3780
     gcgtctccta tcggacttgg tgcagttttg gtccagttcg atagtgtaga cgcccctagg      3840
     attatcgctt gtatatcgaa agccttaact tcggctgaga aacgctatcc acacactcaa      3900
     aaggaagctc tcgccatagt ttgggcggtc gagaggttta gctattactt gacttgcaca      3960
     aatttcacgg tatggacgga ttcggaagcg aataaattta tttttggcag ccagtttaga      4020
     tcagggaaaa gatcgattac tcgagcagaa acgtgggcct tacgactact ttcttttaac      4080
     tttgtaatta agcgggtgcc tggtaatctt aatattgcag acgttttatc tcgcttaatc      4140
     gatgaatccc aaatagacga gccatttgac gataataacg acaggcacat gttgtatttg      4200
     ttagattcaa ctcatatgag tatctcttgg tcagaaatac aattagcttc agaagaagat      4260
     caagagttat cagacgtgaa aacgtgcatt caaacaggaa aatggcctgc tcatctaagg      4320
     aaatacgaat gtctggcgaa acagcttaga tgcttggatt ctctcgtctt taaagacgag      4380
     cttgttattc ttcctacatc tcttaagaaa agagttttag ctacggcaca cgaaggacac      4440
     gtaggcattg gagctacgaa gagaattctc cgggaacatt tttggtggcc cggtatatct      4500
     aaggaagctg aacaatttgt gaaaaattgt gctacttgtc tccttatagc tagaagaaat      4560
     cctccagtac cattgtcgag ccgtgagctt ccgaaagggc catgggagat cattcaaata      4620
     gatttcttat cggtactcgg ttgtggttcc ggacattttt tagtatgcgt agacacatac      4680
     tctcgttatt taaacgtaac agaagtaaag cataccgatt ctaattcaac aaacgtcgct      4740
     ctttcgaaaa ttttcaaaac ttgggggttt ccactagtaa ttcaaagtga taatggacct      4800
     ccgtttaaaa gtgcggaatt tatcaatttt tgggaagaaa aaggagtatc tattcgtaaa      4860
     tcaattcctc ttagtgctca gtctaacggc gcggttgaac gtcaaaacca aggtataatt      4920
     aaggctttag cagcggcaaa agtagaaaaa cgaaattgga atgaggccct tcaagagtac      4980
     gttgacgttc acaatacccg caaacaacac tcaagattag gtgtaacacc cttcgagctc      5040
     ttagtgggtt ggcgttatag aggaaccttt cccagtttgt gggtcgaaga aaaaagtgta      5100
     gatagagata cggtgcgtga aaatgatgct catgcgaagc taattagtgc tcgttatgca      5160
     gactccaaac ggggtgctaa ggatagtttt atccaggtag gagataaggt tgttgttgcg      5220
     gtcctgcgaa actctaaaac tgatccgtct ttctcaaagg agaagtttac agttttagct      5280
     agagatggtg ccaaggttgt aattcgcagc gatagtggga ttcaattgtc cagaaatgta      5340
     cgtgatgtta aaaaagtccc cgtagacctt ataaatgccg atgtaatctt ggatagtaca      5400
     aatcaaacta cacccgatga ttttgataac acccagaggc caagaagaat acttcgcaaa      5460
     cctgcgtggc tagacgatat ggatttgtat taacgtgaaa atgttaagat ttttttttct      5520
     tattagagta gaggaagggt agta                                             5544
//
ID   Gypsy-45_AnFu-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-163
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2857-2857 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 163 BP; 53 A; 18 C; 48 G; 44 T; 0 other;
     tgtagggtcg agtataagga tgagagacaa gagtgagttg tgcagggttg agtataagta        60
     tgagagaata aagagtcagt tgaataatag ctgtcaagcg aaacggatgt ctgatctcgt       120
     gttttgttcg tgaaagaaaa gatcgtgctt tacagtcact aca                         163
//
ID   Gypsy-45_CQ-I repbase;    DNA;    INV; 4763 BP.
XX
AC   AAWU01015815;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_CQ_;
KW   Gypsy-45_CQ-LTR; Gypsy-45_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4763
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 469-469 (2011).
XX
DR   GenBank; AAWU01015815; Positions   31222   35984.
XX
CC   Positions [2073-2606] - Reverse transcriptase
CC   Positions [3745-4215] - Integrase core
CC   'ATCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           583..1950
FT                 /product="Gypsy-45_CQ-I_1p"
FT                 /translation="MERFEIPPFTFKTLPANEVRDQWVRWKRNFQYAVFAS
FT                 GETNKTKLKYILLARAGPDLQDVFQTIPGADVEADDTNGVDPYKVAVEKLD
FT                 AYFAPKHHESMERNIFWTMKPDQGESIEKFLFRAQEQANKCNFGKTQQECR
FT                 EICVIDKITLFAPPDLKEKILQTDKNSLDDVLKIVSTHESVKYQASQMVAA
FT                 GPSGSRQPCLVPVEVNRMHTHPPKNHAVECSRCGKRGHLGNDPSCPALNIQ
FT                 CNRCQRIGHYEQKCRTVMAKGAVSRATNSTPKPKRSFQRVRPVDDENIVDE
FT                 GGDKSFIFSIGDGDEFLWIKIGGIMTQVLIDSGSNKNIIDDTTWKRMKVQG
FT                 IEIRNATKQVDKQFRGYGKDAQPLSVIGMFDSTVEIQNENQQMQAEARFYV
FT                 VAKGNQPLLGKETAQELNVLRLGLPGQDDRTWMVSLILILLGHFFHQLKYV
FT                 SRLRTIARSPN"
FT   CDS           2890..4749
FT                 /product="Gypsy-45_CQ-I_2p"
FT                 /translation="MISDVKNLSFFDNSLRTRVVADASPVALGAVLLQFES
FT                 STDDSPKFICYASKSLTSTEQRYCQTEKESLALVWAVERFAHYLIGRTFEL
FT                 ETDHKPLEAIFSPTSRPCLRIERWILRLQSFRFRVVYRKGSSNIADSLSRL
FT                 TVHSNDNEDIDPDEKFLILTVLESTAIDISEIEDATIHDQELTLVKDSLRS
FT                 GIWKYPEIKVYETFQNELGLVGELVVRGNKMIVPSSLRRRFLELGHEGHPG
FT                 ESGMKRRLRDRVWWPGMDKVIKKWITDCEGCRLTGLPQKPEAMQRRPLPLE
FT                 AWVDVAIDFLGPLPSGEYLFVIVDYFSRYKEIEIMTKITAKDTVDRLRAIF
FT                 KRLGFPRTISLDNAKQFLSSEFRDYCRECGITLNYTTPYFPQQNGEVERQN
FT                 RSLLKRLQISNALKRDWKQDLDEYLTMYYSTPHSITGKTPSELMLGRTIRT
FT                 KLPFLREIETAPPNEEFCDRDAIAKKHACDRENIKRNARPSSIQEGDKVLM
FT                 QNLLPGNKLTTTYSPVEYTVVRKSGTRCTVQSEDSGTTYERNSSHLKKIPT
FT                 SLPAESVDLTSTRSSTSPSNCSISQEPLREDSPPAPLDTSPKPADIPNIPS
FT                 RPKRVCKRPLKFDDYVDVPLDQ"
XX
SQ   Sequence 4763 BP; 1359 A; 1131 C; 1222 G; 1051 T; 0 other;
     ttggcgacga ggcgggcgct ctagaaccca gggtaagaaa gaatttgttc gttattcata        60
     aaaggaaaag acgtaaacat aaaaattaat cttgcttttt aaagcagccg gacgaaggca       120
     tccgccgctc aaaggcatcc gccggtcgaa ggcatccgcc gatcaaaggc atccgccgct       180
     caaaggcatc cgccgatcaa aggcatccgc cgctcgaagg catccgccga tcaaaggcat       240
     ccgccgctcg aaggcatccg ccgatcaaag gcatccgccg atcaaaggca tccgccgctc       300
     gaagggatcc gccgctcgaa gggatccgcc gctcgaaggg atccgccgcg caaaggcatc       360
     tggccggtcg aaggcattcg ctagacggaa catccaccgc acggagtagg aaagctagaa       420
     gcagtaccag ctgcaccgga agaggcagga cgtacgaagg tcgtccacca caaacatgtt       480
     ttctcggaac tgattcggca agacgattca ggaaaccagc aaggtaaaag ttttagtttc       540
     aaatgctaag tgaaattttc tgagtatttt cattctatta ggatggaaag gttcgaaatt       600
     cccccgttca cattcaagac gctgccggcg aacgaagttc gtgaccaatg ggtccgctgg       660
     aagcgaaatt tccagtatgc agtttttgcc agtggagaaa cgaacaaaac aaaactgaag       720
     tacattcttc tggcacgggc cggtcctgac cttcaggatg ttttccaaac aatccccgga       780
     gccgacgtgg aagcggacga tacgaatgga gtggatccgt acaaagttgc cgttgaaaag       840
     ctcgacgctt actttgctcc aaagcaccac gaatcgatgg agcggaatat cttctggacg       900
     atgaaaccag accaaggaga gtccatcgaa aagttcctgt tcagagctca agagcaagcc       960
     aacaaatgca actttggcaa gacacagcaa gaatgccgcg aaatatgcgt gattgacaag      1020
     atcacattgt ttgccccgcc ggacttgaag gagaagatac ttcaaacgga caagaacagc      1080
     ctggatgatg tcctcaagat tgtctcaacg cacgaatccg tgaagtatca ggccagccag      1140
     atggtagcag caggaccgtc cggtagtcgt caaccatgcc tggtcccggt ggaagtgaac      1200
     cgaatgcaca cacatccacc aaagaaccac gctgttgagt gttcaaggtg cggcaaacgc      1260
     gggcacttgg gaaatgaccc aagttgtcca gcgctcaaca tccagtgtaa ccgttgccag      1320
     agaattggac actacgagca aaaatgtcga acagttatgg cgaagggcgc agtgagccga      1380
     gctacgaact caaccccaaa accaaagcgc agttttcaac gagtacgacc agtagatgat      1440
     gagaacatcg ttgacgaggg gggagacaaa agtttcatat tctcgatcgg agatggtgac      1500
     gaatttctgt ggatcaagat tggaggcatc atgacgcaag tgctgattga ttctggaagc      1560
     aacaagaaca taattgacga tacgacttgg aagcgtatga aggtacaagg aatcgaaatt      1620
     cgaaatgcta ccaagcaggt cgacaagcag ttcaggggat atggcaaaga cgcacaacca      1680
     ctcagcgtca ttggaatgtt tgattctaca gtcgaaatcc agaatgagaa tcaacagatg      1740
     caggctgaag cacgattcta cgtcgtcgca aagggaaacc agccgctgct cgggaaggaa      1800
     accgcccagg agctcaacgt actaaggctt gggctgccgg gtcaagatga ccggacctgg      1860
     atggtaagtt tgattttaat actgctaggt catttctttc atcaacttaa atatgtttca      1920
     agattgagaa caatagcccg ttccccaaac tgaagggaat taagctccgc atttcggttg      1980
     atggctcggt aactcccgtc gctcagccag caagacgacc accccttgct ctgctgagtc      2040
     gcattgagga gaagctgaac caactggaat ctacggacat aatcgagaag gtagagcagt      2100
     acagcgactg ggtttcaccc ttggtggtgg tggttaaaga taatggcgac ttgagactgt      2160
     gtgttgatat gcgccaggcg aaccgtgcga tcaagcggga acactttgtc atgccgacag      2220
     ttgacgatat cttgcctcgg atgaacgcag caaatttttt cacccggctg gacgtcaagg      2280
     acgcgttcca ccagattgag ctggaggaaa cgtcacgctc gattactacc tttattacgc      2340
     accgcggcat gtaccgatac aaacgactaa tgttcgggat cagctgtgcc ccggaacaat      2400
     accagaaaat catgggacag ctactggcgg ggtgcgacaa ctgtgtgcat tacatcgatg      2460
     acatcattgt gtttggacgc acagaagaag aacacgatcg ttgtgtggaa aaggtgctaa      2520
     ccgtactaaa gagccgtaac gttctgctga atctcaagaa atgtttgttc aaagtgactg      2580
     agctcgattt ccttggtcat cacatttcgg acaaaggcat acgaccagct gacgataagg      2640
     tgcgagcgat tcgagccttc agatctccgc gaaatgtcga agaacttagg agtttcctgg      2700
     gactagtcac ttacgtcgga agattcttgc cgggtcttgg gacaatttcg gctccgctgc      2760
     gaaagcttac tcaacgagac gttagcttca gctgggaaaa tcagcacgag caggctttct      2820
     tgaggtggat tttcatattt ttcatgtatt tcttggcatg cttaaaattt caattacagg      2880
     ttgaaaacga tgatttcgga cgtcaagaac ttgagttttt ttgacaactc ccttcgtaca      2940
     agagtcgtcg cggatgcatc tccggtagca ctgggcgctg ttttgttgca atttgaatcc      3000
     tcaaccgacg acagcccaaa atttatttgc tacgcaagca aaagtttgac atctaccgag      3060
     cagcgatact gccagaccga gaaagagtcc ttggcgttgg tttgggcggt cgaacgattt      3120
     gcgcattatc tcatcggtcg gacgtttgaa ttagagactg accacaaacc cctcgaagca      3180
     attttctcac caacatcacg cccatgcttg aggatcgaac gatggattct tcgtctacaa      3240
     tcgttcaggt tccgagttgt ctaccggaaa gggtcatcta acattgctga ctctttgtcg      3300
     aggctaaccg tgcattccaa tgacaacgaa gatatcgatc ctgatgagaa gttcctgatt      3360
     ctgaccgtgt tggaatcaac ggcgatcgat attagtgaga ttgaggacgc gaccattcac      3420
     gatcaagagc tgaccctcgt gaaggatagc ttgcgctcag gaatttggaa gtacccggag      3480
     atcaaagtgt acgaaacctt ccaaaacgaa cttggattgg tcggagagct cgttgtcagg      3540
     ggcaacaaga tgatcgttcc gtcaagtttg cgcaggagat tccttgaact gggacatgag      3600
     ggacatccag gagaatccgg aatgaagcgg aggttgagag acagagtatg gtggccagga      3660
     atggacaagg tcatcaagaa atggattact gattgtgagg gctgccgact aacaggactt      3720
     ccgcagaaac cagaagcgat gcaacgaaga ccactgcccc tggaagcttg ggtggatgtt      3780
     gccatcgatt ttcttggccc gcttccttct ggggagtacc tcttcgtaat cgttgactac      3840
     ttcagccgct ataaggaaat cgaaataatg accaaaatca cagcgaagga taccgttgat      3900
     cgacttcgtg ccattttcaa gcggctgggg ttcccgagga caatcagtct cgacaatgcg      3960
     aagcagttct tgagttcgga gttccgggac tattgtaggg aatgcggtat aaccctgaac      4020
     tacacaacac cgtacttccc gcagcaaaat ggagaggtcg aaaggcaaaa cagatcattg      4080
     ctgaagcggc tgcagatcag caacgctttg aaacgagact ggaagcagga ccttgacgag      4140
     tacttgacga tgtactactc tacgccgcat tccataaccg gaaagacacc gtcggagttg      4200
     atgctgggac gcacgattag aaccaaactt ccgttcttga gggaaattga aaccgctccg      4260
     ccaaacgaag agttctgtga tcgcgatgct attgcgaaga aacatgcttg tgaccgtgag      4320
     aacatcaagc ggaacgcgag accttcgtcg attcaagaag gggataaagt gttgatgcaa      4380
     aatttactac ccggaaacaa gctcacgaca acctactctc cggtcgagta tactgttgta      4440
     cggaaatctg gtacacgttg cacagtacag agcgaggata gtggaacaac ctatgagcga      4500
     aactcttcgc atctgaaaaa gattccaact tcactgccag cggaatctgt agatctaaca      4560
     tcaactcgct catcaacatc tccatctaac tgttctattt cgcaggaacc actccgggaa      4620
     gattctccac cagcaccatt ggatacctca ccgaagcctg ctgatatccc taatattccg      4680
     tcaaggccaa agcgagtttg caaacgtccg ctgaagtttg atgattacgt tgatgttccg      4740
     ctcgatcaat aaaggaaggg aga                                              4763
//
ID   Gypsy-45_CQ-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   AAWU01015815;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_CQ_;
KW   Gypsy-45_CQ-I; Gypsy-45_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-158
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 470-470 (2011).
XX
DR   GenBank; AAWU01015815; Positions   31064   31221.
XX
SQ   Sequence 158 BP; 47 A; 32 C; 42 G; 37 T; 0 other;
     tgtggtaccc tgtgcgggtt caggagtgcg ctacgtgcag gtgcaccctg tggacgagct        60
     gtcagtcgag gagttaagga aaatcaaata acacgtgtgc tactaactac tgtatactaa       120
     agttcgaata ataaacgatt gcaaccgaga ttgcaaca                               158
//
ID   Gypsy-45_DEl-I repbase;    DNA;    INV; 3976 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3976
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 548-548 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon. 5'-truncated. The insertion similar to
CC   Helitron-N1_DEl is excluded from the consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(108..326,235..561,565..1335,1393..1704,
FT                 1661..2287,2491..2793,2814..3110,3110..3586,
FT                 3556..3714)
FT                 /product="Gypsy-45_DEl-I_1p"
FT                 /note="reverse trnascriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MIEQGIIRKSKSPYCSPIWIVPKKSDASGKMKYRLVV
FT                 DYRNLNEITINDKFPIPRMDEILDKLGRCQYFTTSIMRSLSMINFRYPEWM
FT                 RYWTNWEDANISLHRFSQRISSNPNGTRVNSXNSILNKTRSLRIYRMPFGL
FT                 KNAPATSQRCMNNLLEDLXYKDCLVYLDDIIIFSTSLKNVFYYKTEFLGHV
FT                 VTTTGIKPNPKKIRAIINFPIPKTPKEIKSFLGLCGFYRKFIPDFAHIVKP
FT                 MTMKLKKGAIINIKEKPYIEAFEKMKILITSDPILIYPDFNKPFSLTTDAS
FT                 NMAIGAVLSQNHKPICYASRTLNEHEINYATIEKELLAIVWATKYFRSYLF
FT                 GRSFEILSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDYQIKYXPGKENYVA
FT                 DALSRTXIEENMFTDDIEENIPEETASSTMQQPTVLKKITRTVFPGRNRSN
FT                 ALFSQIKNSIIYKEMTETLAKEIIKEYLCTKKSAIYFHNDSDFLTFQKAYV
FT                 EIIXANHLTKLVRCTAKLEDILTYADFKEKILKRHKELLHPGIEKNYNDIK
FT                 NYYIQESKKTTEWFREKYYFPDYQKLIQNIINECETCNIAKTEHRNTKLTF
FT                 ELTPEIQNIREKFVIDFYMVGKQQFLSCIDVYSKFVPVEVKAGLVKLKEPH
FT                 FSEMGKPQEIKADKDSAFMCVALHNWLNSEGVHIQITTSKNGISDVERFHK
FT                 TVNEKLRIIGSESDVENRYTEFELILYVYNHKTKHNTTNQIPANIFMYGRN
FT                 SSKYDDIPGKPMIFSIRLTTIIPLAISQSIEINPNKAQNRYLLFKTGSIDI
FT                 PINYEYHYLSVNITKTETTFESLLKEANEFSDIIQIRYLVENLKEKSMELL
FT                 GLFNIIGSVYKYLFGTLDQDDKDEMEEKMNNLVDTSVQNTDLNMAIDVMNN
FT                 GIEVINKLKADGEREQQVSVLIINLQHFTEYVEDIELGMQLTRLGLNKVKH
FT                 EYLKNVNPEKLLKIKTSTWLKTDTNEILILSHIPSEIVKAPVFEIIPYPDE
FT                 NYNILIENIFEKCFLYDNKVFNKETEEILFDECINGIIKQENTECNHTKTY
FT                 KNFQINYVEPNILLTWNIPKTLFNQNCINKEISIVGSNLLKILNCSVQLEE
FT                 LTILFSTIRRAHYLNTMLDYTQSVYVNNKVXKLEPLSYIQTKEIIESHTKY
FT                 XNDSK"
XX
SQ   Sequence 3976 BP; 1697 A; 601 C; 586 G; 1072 T; 20 other;
     gtaccattaa acattcaata caaacaaaac atgaagaccc agtatatagg aagccataca        60
     aatatcctca aacctttgat gaagaagtta awaagcaaat aaatgaaatg attgaacagg       120
     gaatwattcg taaatcaaaa tctccctatt gctcacccat ttggatagtt ccaaaaaaga       180
     gcgatgcatc aggcaagatg aagtatagat tagtagtaga ttacagaaat ttaaatgaga       240
     tcactatcaa tgataaattt ccgataccca gaatggatga gatattggac aaattgggaa       300
     gatgccaata tttcactaca tcgatttagc caaaggattt catcaaatcc aaatggaaca       360
     agagtcaata gcwaaaacag cattctcaac aaaacacggt cattacgaat atacagaatg       420
     ccatttggcc ttaaaaacgc ccccgccacm tctcaaagat gtatgaacaa cttattagaa       480
     gatttawttt ataaagactg tttggtatat ctagatgata taataatatt ctcmacttca       540
     ttgaagaacg tattttatta ttgaaaaaca gaatttttag gccacgtagt aactactaca       600
     ggtattaaac caaatccaaa aaagataaga gccataataa atttcccaat accaaaaaca       660
     ccaaaagaaa ttaaatcatt tctaggattg tgtggatttt atcgaaaatt cataccggac       720
     tttgcacata tcgtaaaacc aatgacaatg aaattaaaaa aaggtgccat aattaatatt       780
     aaagaaaaac cctacataga agcattcgaa aaaatgaaaa ttttaattac ttcagaccca       840
     attttaattt atcccgactt taataaacca ttttctctaa caacggacgc aagcaacatg       900
     gctataggag cagtattgtc acaaaatcat aaaccaatct gttatgctag cagaactctc       960
     aacgaacatg aaataaatta cgcgactatt gaaaaagaac ttttagcaat cgtatgggcc      1020
     accaaatatt ttagatcata tttattcggt aggtcttttg aaatattaag cgatcataaa      1080
     cctttagttt ggttgaataa cataaaagaa ccwaatatga aactacaacg atggaaaata      1140
     aaattaaacg aatttgatta tcagattaaa tatwtgccag gaaaagaaaa ttatgtagcg      1200
     gacgcattat ccaggaccam aatagaagaa aatatgttta cagatgatat tgaggaaaat      1260
     ataccagaag aaacagccag tagtacaatg caacagccca cagtgctcaa gaagataacc      1320
     agaactgtat ttccataact gagagaccat ttaattattt ttccgacaaa tcgagttaat      1380
     taaaggagat gaggacgaaa cagaagtaac gcattatttt cacaaattaa aaattcaatt      1440
     atttacaaag aaatgactga aactttagca aaagaaataa ttaaagaata cttatgtact      1500
     aaaaagagtg caatatattt ccataacgat tcagacttcc ttacattcca aaaagcttat      1560
     gtggaaatta taaawgcaaa tcacttgacg aaattagtaa gatgtacggc aaaacttgaa      1620
     gacatactga catatgcaga cttcaaagaa aaaatattaa aacgacataa agaactatta      1680
     catccaggaa tcgaaaaaaa ctactgaatg gtttagagaa aaatattatt tccccgacta      1740
     tcaaaaatta attcagaaca taataaatga atgtgaaact tgcaacattg ctaaaacgga      1800
     acatagaaat accaaattga catttgaact tactccagaa attcaaaata taagagagaa      1860
     atttgtcatt gatttttata tggtgggtaa gcaacaattt ttatcatgta tcgacgtata      1920
     ttcaaaattc gttcctgtag aagtcaaagc aggactggtg aaactaaaag agcctcattt      1980
     tagcgaaatg ggaaaaccac aggaaatcaa agcggataaa gattccgcat ttatgtgcgt      2040
     agctttacac aattggttaa attcagaagg agtacatatt caaataacwa caagtaaaaa      2100
     cggtatatca gacgtagaaa gatttcataa aacggttaat gagaaattga gaattatagg      2160
     aagtgaatca gacgttgaaa ataggtatac cgaatttgaa ttaattttgt acgtttacaa      2220
     tcataaaaca aaacataata ctacaaatca aataccagcc aacatattta tgtatggcag      2280
     gaactcctga ttatgacacg caagaaaaaa aataacatag aattgaaaaa ttaaatgaaa      2340
     awcgtcatga atatgaaata gatacaaaat ataccggaca agcaccttag taaagtccaa      2400
     aactactaat ccatttaaga agacaggaac cttaagaaag atagacgaaa aacattttga      2460
     agaaacaaaa aattaagggg aagaaaataa agtaaatatg atgatattcc aggcaagcca      2520
     atgattttct ccataagatt aacaactata attccactag caatcagtca gagtatcgaa      2580
     ataaatccca ataaggccca aaacagatat cttttattta aaacaggatc aatagatatc      2640
     cccattaatt atgaatatca ttatctaagt gtaaacataa caaaaactga aacaaccttc      2700
     gaaagtcttt tgaaagaagc taatgaattt agtgacataa tacaaatccg atatctagta      2760
     gaaaacttaa aagagaaatc aatggaatta ctttagcaaa acgcagtaag tgaggcttat      2820
     tcaatattat aggatcagtt tataaatacc tattcgggac attagaccaa gatgataaag      2880
     atgagatgga agaaaaaatg aataacttag tagacactag tgttcagaac accgatttaa      2940
     acatggctat cgatgtcatg aataatggaa ttgaggtaat caataaatta aaggcagacg      3000
     gagaaaggga acaacaagtc agcgttttaa ttattaattt acaacacttt acagaatatg      3060
     tagaagatat tgaattagga atgcagctga caagattagg tttaaataag taaaacatga      3120
     gtatttgaag aacgtgaacc ctgagaaatt gttgaaaatc aaaacctcca cttggcttaa      3180
     aacagacaca aatgaaattt tgattctttc ccatattcct tcagagatag ttaaagctcc      3240
     cgtttttgaa attattcctt atcccgatga aaattataat attttaatag aaaatatatt      3300
     cgaaaaatgt ttcttatatg acaataaagt atttaataaa gaaacagaag aaattttatt      3360
     tgacgaatgt ataaatggaa taattaagca agaaaatact gaatgcaatc ataccaaaac      3420
     atataaaaat ttccaaatta attatgttga gccaaatatt ttattgacct ggaatatccc      3480
     taaaacatta tttaatcaaa attgtattaa taaagaaatt tctatagttg gaagtaacct      3540
     tcttaaaatc cttaattgtt cagtacaatt agaagagctc actatttaaa tacaatgtta      3600
     gattacacac agagcgttta cgtaaataat aaagtamcaa agttagaacc attgtcttat      3660
     attcaaacaa aagaaatwat agaatcacac acaaagtatw ataatgattc maagtaacat      3720
     taacaacttt tgtaatcaat attataagca ttttattgta cttattgcat aaatttaaga      3780
     gcataccaag aaaacttatt gtaaaatatg taaaatcaaa ggaagaaaca taaaaaagta      3840
     cagaaattgt aaacgatcta ccaaaccaaa ttaacatagw asaaaatgta wtgttatatc      3900
     caaccctatc cacctgagga caggccawat tcaaagaatg ggggagtgac atatccataa      3960
     tcccacacaa ctctta                                                      3976
//
ID   Gypsy-45_DEl-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-186
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 486-486 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. Likely 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 186 BP; 64 A; 56 C; 24 G; 41 T; 1 other;
     tgcacatgtc cacacgccca cacacacata caccctaccc aatcagccaa tatctaattg        60
     maaatgtacc caagccttag actaaacatc cagaacgaat caaattacgt tatcagttcg       120
     ttcccacact ttcggaccct caatggagaa ttaccatgcg agtgaatccc aagattctag       180
     actaaa                                                                  186
//
ID   Gypsy-45_DWil-I repbase;    DNA;    INV; 4746 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   19-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_DWil_;
KW   Gypsy-45_DWil-LTR; Gypsy-45_DWil-I.
XX
NM   Gypsy-45_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4746
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1859-1859 (2012).
XX
RN   [3]
RP   1-4746
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..4745
FT                 /product="Gypsy-45_DWil-I_1p"
FT                 /note="a few amino acids (MWEPAPRC) extended to
FT                 LTR."
FT                 /translation="MVDFCFQTKHLYLFAMTESVIKPFLCESLGNALLQNE
FT                 WEKWLRAFKIYLEVEEVKSVIQKRTKLLHLGGIQLQTVAYALPGAIVEFNE
FT                 ADQNDVFSVLVDKLTAYFSPKQNSTFERHLFRKISPEEGETFGKFILRLRQ
FT                 QIQKCNFGSTKAEIEEICLKDKIIDIWASTELKKKLLEKEQTLSEIIEACQ
FT                 VDEEINKQSQLMHSKSLPEIINKITNIKSRKINQSDCGRCGRSGHKEDSQM
FT                 CPARQIKCNRCSRVGHFARRCRTNLKRPYPQSNDKEAMGNSKRKYVHRIEE
FT                 DNPVENKTIQRNCFKIDSDEEYEEMMQCRIGGADVSLVIDSGSRFNLISQD
FT                 DWLTLQLKKATVFNVRGNSQSQFRGYASDKILKVICIFEAPISIKQNPELI
FT                 ASFFVIEKGRQSLLGRETATKLNVLRVGLPVNNIEIVPPFPKWKGISVKLT
FT                 IDPYVDPVKQPMRRIPVALEEKVNAKLEEAYNLDIIEPVRGHSPWISPMVI
FT                 AFKESGDIRICLDMRQANRAILRENYPLPTFESFMTKLRNARIFSRLDLKD
FT                 AYHQLELDETSRQITTFITPKGLFRYKRLMFGINAAPEIFQRRMEELLAPC
FT                 NNVMNYIDDVIIFGSSKEEHDKALEKVRSVFNNNNVLLNNEKCIWETNRIK
FT                 FLGHILTDKGIEVDPDKIESIRLFRPPKNKEETRSFLGLVTYVGKFIADLA
FT                 DQTEPLRELLKKDRKFIWGPAEENGFQKLKLALTKIPSLSYFNPKNKTRLI
FT                 ADASPVALGAVLLQFNDEGEPNIIAFASRSLTNIEKRYSQTEKESLALVWA
FT                 VEKYYFYLIGLEFELVTDHKPLETIFKPTSKPPARIERWLLRLQAYKFKVI
FT                 YKSGKENIADSLSRLCEQTPTSSYDIKGEHSILRIIENATPISISISEIAE
FT                 NSTQDEEILDAMVCLEQGSWDSAMSNKLYPFRHELSTIGTIMLRGVRIVIP
FT                 ATLRQKVLVLAHEGHPGESAMKRRLRSKVWWPQIDRNTEKFVKNCFDCILV
FT                 SQATNPPPMKRTEFPNGPWISVATDLLGPLPNNEYILVLIDYYSRYMEFKF
FT                 LRSITSESLIGACGEIFSRLGYPKELRTDNGRQYVSLEFRNYCKSCGIEQI
FT                 TTPPYWPQANGEVENMNKALVKRLKIAHQNKKNLKDEIQAFTLMYNVTPHG
FT                 TTGSAPTELMFNRVIRDKIPGIQDLVGVFTDSAERDNDCINKQKGKETADK
FT                 RRGAKEVNINVGDKVVLKNVVFPHKLTPNFDTTEYEVLNKEGNIVQVCGGG
FT                 KTLIRNANHLKRVPGETESSDATNTKSFPIPATNQTPQPAAQLEEQAPEED
FT                 YENSTEGLKLKLVRKGG"
XX
SQ   Sequence 4746 BP; 1693 A; 844 C; 1034 G; 1175 T; 0 other;
     ttggcgacga ggtaaaaaaa aaaaacaatt aattaaaaac aatatagcga actagcaaat        60
     aaaatagtta aatagtgaaa tggaaaaaaa aggaaaagag aaacattagc aatatataaa       120
     tgcagcgtgg ctgtaccagt gcaagtccaa tgccttgcta cgatccgtta gttttttttt       180
     ttatttcttt tcgttttgcg ttctctgtgc ttacgagttc aaagagaaaa acagaaggag       240
     aaattgtttt ttttaagaga aaccctaaaa cggtgtaatc atagtaggca taaaacacat       300
     acatacgtac gcgtatgcat ggacaaaaaa aaaagtcaaa tgcatttttc actcataata       360
     aaaaaaaaag agaagaaagc gaaaagaaat ctgacaaatg tcagaggcga aatgccgatt       420
     aattattaaa caaatgttta ataaagaagt atctgacaaa ggtcagaggt ggaaaccgat       480
     aagatattaa acaaatgttt aataagaaga actatctgac aaaggtcagg ggcgaaaagc       540
     cgataaggtg ttaaacagat gtttaataac aaaaactatc tggcaaaggt cggcaagagg       600
     ctaaaagccg ataagagatt aaacaaatgt aaaaaaaaaa aaaagtcaag atattatctg       660
     acagtggtca gtggcagtct gccgatgaaa aattaataga acaaatgttt tgggaatatt       720
     cgataaaacg caacttgctc gacagaagca tttaatgaat ggttgatttt tgttttcaga       780
     caaaacatct atacttattc gcaatgaccg aaagcgtcat aaaacctttt ctgtgtgaaa       840
     gtttggggaa cgcattgctc caaaatgaat gggaaaagtg gctgcgcgct tttaagattt       900
     atctggaagt ggaagaagtc aaatctgtaa ttcagaaaag aacaaaattg ttacatttgg       960
     gtggtatcca attgcagacg gttgcatacg cattgccggg tgccatagta gaatttaacg      1020
     aggccgatca aaatgatgtt ttttctgtgc tagtcgataa actgacagct tacttctcac      1080
     ccaagcaaaa ctcgactttt gaaagacacc tttttaggaa aatctctcct gaagaaggtg      1140
     aaacatttgg gaagtttatt ttgcgtttgc gccaacaaat ccaaaagtgt aatttcgggt      1200
     ctacgaaagc cgaaatagaa gaaatttgtt taaaagataa aatcattgac atctgggcta      1260
     gtacggaact aaaaaagaaa ttattggaaa aagaacaaac tttaagcgaa atcatcgaag      1320
     cctgccaagt ggacgaggaa ataaataagc agtcgcagct tatgcactcg aagtcattgc      1380
     cagaaatcat aaataaaatc actaatataa aatcaaggaa aattaatcag agtgattgtg      1440
     gaaggtgcgg acggtcagga cacaaggaag atagtcagat gtgcccagca cgccagatta      1500
     aatgcaaccg atgctctcgt gtgggtcact ttgcccgcag atgcagaaca aaccttaaac      1560
     gcccataccc acagtcaaat gacaaggaag cgatgggaaa ttccaaacgc aaatatgtgc      1620
     accgaattga agaagataat ccagtggaaa ataagacaat ccaacggaat tgttttaaga      1680
     tagacagtga cgaggagtat gaagagatga tgcaatgccg aattggaggt gcagatgttt      1740
     ccctagtaat tgattctgga tcccggttta accttatctc gcaagacgat tggttaactc      1800
     ttcaattaaa gaaagcaaca gtttttaacg tccgcggaaa ttcacaaagt caatttaggg      1860
     gatacgcctc agataaaatc cttaaagtta tttgtatttt tgaggcaccg atatcaatca      1920
     agcagaaccc cgagctgatt gcatccttct ttgtaattga aaaaggacgg cagtcactgc      1980
     tgggacggga aacagcaacg aagttaaatg ttctgcgagt tggactaccg gttaacaaca      2040
     ttgagattgt gccaccattt cccaagtgga aaggtattag tgtgaaacta acaatagacc      2100
     cctacgttga tcctgtgaaa caaccaatga ggcgtattcc tgttgcgctc gaagagaaag      2160
     tcaatgctaa gttggaggaa gcctacaatc tggacattat tgaaccggtc aggggtcaca      2220
     gcccgtggat ctctccaatg gtgatcgcgt tcaaagaaag tggtgatatt cgaatatgtt      2280
     tggatatgag gcaagccaac cgtgcgattc ttcgtgagaa ctaccctttg ccgacatttg      2340
     aatcttttat gactaaatta agaaatgcca gaatcttttc acgactcgat ctaaaggacg      2400
     cgtaccatca attggagtta gatgaaacaa gtaggcagat aacaactttt attacaccga      2460
     aggggttatt taggtataag cgactaatgt ttggtataaa tgcggcgccg gaaatcttcc      2520
     aacgacggat ggaagaactc ttagcaccgt gcaacaacgt gatgaattat atcgacgatg      2580
     taataatttt tggaagtagc aaagaagagc acgataaggc actggaaaag gttcgaagcg      2640
     ttttcaataa taataatgtt cttctaaaca atgagaaatg catttgggag acaaatagaa      2700
     ttaaattttt gggacacatt ttaacagaca aaggaattga agtagatcct gataaaattg      2760
     aatctattag attatttcgg ccacccaaaa acaaggaaga aactcgtagt ttcctaggac      2820
     tagttaccta tgtgggcaag ttcattgcag acctagcgga ccaaacagag cctttacgtg      2880
     agcttttaaa gaaagatcgg aagtttattt ggggaccagc tgaagaaaat gggtttcaaa      2940
     agctaaagtt agctttaact aaaatcccga gtctctcata ttttaaccct aaaaataaaa      3000
     cgcgactaat cgctgatgct agtccggttg ctctaggtgc agtactgttg caatttaacg      3060
     atgagggcga gcccaatata attgcatttg ctagtaggag cttaacgaat atagaaaagc      3120
     gatactccca aacggaaaag gagagtttag ctttggtctg ggcggtagag aaatactatt      3180
     tttatctgat aggtctagag ttcgaattag tgactgacca caaaccacta gaaaccattt      3240
     tcaagccaac atcaaagcct ccagcgcgta tcgaaagatg gcttctgcgt cttcaagcgt      3300
     ataagtttaa agtcatttac aaatcaggaa aggaaaacat agctgatagt ttgtcccgtt      3360
     tgtgtgagca aacgccaacc agttcttacg acatcaaggg tgagcatagc atattgcgaa      3420
     ttattgaaaa cgctacacca atatcaatat cgatatctga aatagctgaa aacagcacac      3480
     aggatgagga aatattagac gcaatggtgt gccttgagca aggttcttgg gactcggcaa      3540
     tgtcaaataa attataccca tttcgacatg aactgtcaac tattggaaca atcatgctaa      3600
     gaggagttcg gattgttatt ccggcaacat tgagacagaa agtgttggtg ctggcacatg      3660
     agggacatcc tggcgaatca gccatgaagc gaagattgag gtccaaagtc tggtggcccc      3720
     aaattgacag aaataccgag aaatttgtaa agaattgttt tgattgtatt ttagtatccc      3780
     aagcgacaaa tccaccgcct atgaagagaa cagaatttcc gaatgggcca tggatttcgg      3840
     tcgctacaga tcttttaggg ccactaccaa acaatgaata tattttagtc ttaatagact      3900
     attactctag atacatggag tttaaattcc ttcgctccat tacatcggaa tcactaattg      3960
     gggcgtgtgg ggaaattttc agtaggcttg gttacccgaa agagttacga accgataatg      4020
     gccgacaata tgtaagcctt gaattcagaa actattgtaa atcatgcggc atcgagcaaa      4080
     taacaacacc cccttattgg ccacaggcta acggcgaggt cgagaatatg aacaaggcat      4140
     tagtcaagcg gttgaagata gctcatcaaa acaagaaaaa tcttaaggat gaaattcaag      4200
     ctttcacact gatgtataat gtaacccctc atgggaccac aggctccgct cctacagagc      4260
     tgatgttcaa tcgagtcatt agggataaaa tcccgggaat acaagattta gtgggagtgt      4320
     ttacagactc agcggaaagg gataatgact gcatcaataa acaaaaggga aaggaaactg      4380
     cagacaaaag gagaggagca aaggaagtaa atatcaatgt aggagataag gtggttctta      4440
     agaatgtagt atttccccac aaactaacac caaattttga cactactgaa tacgaagtct      4500
     tgaataaaga agggaatata gtacaagtat gtgggggagg caaaacgctc ataagaaatg      4560
     caaatcacct taaaagggtc cctggtgaaa cggaatcgtc cgatgctacc aacacaaaat      4620
     cgtttccaat acctgccaca aaccaaactc cacagccagc cgcacaactc gaggagcaag      4680
     caccagaaga ggattacgaa aactccaccg agggattaaa gcttaagctc gtgagaaaag      4740
     gaggga                                                                 4746
//
ID   Gypsy-45_DWil-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_DWil_;
KW   Gypsy-45_DWil-LTR; Gypsy-45_DWil-I.
XX
NM   Gypsy-45_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-228
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1860-1860 (2012).
XX
RN   [3]
RP   1-228
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 228 BP; 60 A; 48 C; 45 G; 75 T; 0 other;
     tgtgggaacc agcaccgaga tgctaagcgg caatcgacgc ctacaactct aactctctct        60
     ctctctctct ctatgatcca ttattacctc tctctcttgg ttctaattag tatatatgta       120
     tttagtatat ttgtgacaat caaagcggcc gcatcgaagc gggagaatat acctgtgttt       180
     atgaatttgg aagtaacgtg ttttattgga aagtaccggg ttattaca                    228
//
ID   Gypsy-45_LMi-I repbase;    DNA;    INV; 4687 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4687
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..4664
FT                 /product="Gypsy-45_LMi-I_1p"
FT                 /translation="MSTPPNVIPPVVAPSMDLTQFCQFQAQQMSQLTQAVQ
FT                 QLAQSQQATAQTQQSLPSRPQQDVQSAPVPPFRPFIEEKETWHEWLVQFTS
FT                 HLTAYNVQGTVKLPFFLACAGVVVYRTASKLFPTTSPESVSYEALIEALSK
FT                 YYDEQVHVAAARFKFFRSRKQEGQTYRQWLAELQGLTRDCKFRCSCGEYYN
FT                 DSMIRDVITQNVPDNRIREQICADPTLQQVMQIIDFQDVCDVAKTSFDPVG
FT                 VCTVSTARQGKRQQNGPALTQGARPAGLSAAGRKHKRSTYPARGKVKSCPR
FT                 CFSKHTRDNCPSRSATCFACGKLGHVRSVCLQQNKGSTEQARTGARSHHIN
FT                 VVHSPSPTSDTTVELASSQPVSSQARYRNVNKLFVDLEILGRTVTFLLDTG
FT                 ASVSLLNRDTYNLLGQPPLQNSCTLLTAYNGQDIPVLGSYTCDATYRSVTK
FT                 TVTFQVLRASNSANIFGLDLFDLFGLRIVDKVLAVMSYDHRDTVAKLCDEF
FT                 SDLFRDGIGMANNFIASVTLKDAARPRFCKARPVPYALRDQVADLLRQWQA
FT                 NGVIEPITASQWASPLVIVKKPNGKLRLCADFKSTVNPQTVIDSYPLPRPE
FT                 ELMDRLGAGRYFSKIDLRDAYLQLPLDVQSQQVFVINTHLGLFKFLRLPFG
FT                 SASSPAIFQRYLEQLTATVPACSNYLDDIVVSGRTPEEHVNNLRSLFEVLL
FT                 QAGLTCNRDKCVFFQSELEYLGHVINAQGIHPTQSHLQAICDLPPPTTITE
FT                 LHSVLGKLTYYIRFIPNASQIAAPLHRLRRKNVPFVWSKECDVAFRKLKDA
FT                 LLSDNCLVPFDVTKPVILAVDASSYGLGVVLSHQMGSVDRPIAFASKLLTK
FT                 AQQNYSQIEKEALAIIFGVTRFHQYLYGRKFYLVTDHKPLQSLFHPAKPIP
FT                 QRTAQKLQRWALILSNYQYEIVYRPTTHHANADTLSRLPVGPDSDFDASEA
FT                 ACCHIDTQDSNALDKFPLDYRQVAHATAADPDLQILLQYIRSGWPRSLKQI
FT                 SNPGVRQYFARRFALSTHRGVILLRTDGDMSRVVIPQALRARVLNLLHQGH
FT                 WGVVRTKQLARKHCTWVGLDKDIEHMTSRCRACADNQSAPPQHFTDWPKST
FT                 GPWQRIHVDYAGPFWKTRWLIVVDAFSKFPFVVPTNSTTTSATVKILQSIF
FT                 CIEGLPELLVSDNGPQFVSADFEQFCASNGIRHLTSAPFHPQSNGEAERFV
FT                 RTFKQQMSKLRSHHSRDQALLLFLSSYRSQPRDGPSPAELLHGRRHRTLLQ
FT                 LLHPPLRPPASRHSRAKYGVNTPVLFRCFTGAKRWERGTVEKCLGSSMFLI
FT                 RGPSGVIRRHANQLRPCYVSVSAAGPLFSAPVSTRGTPPAGAATRITPASS
FT                 CPEPMEWAPAGALLSQSPAGSHGSQPASPPPSAAAAGSGATGLSQEAAGPA
FT                 SLPQPAVLMDADVELPLSPGLGGFPRRSDNECWEADRGPRPAQASTPVPPE
FT                 ASTSAPPPAIVLFLGDTIRRR"
XX
SQ   Sequence 4687 BP; 1011 A; 1218 C; 1151 G; 1307 T; 0 other;
     atggcgacga ggtctgctta acttcgtggt tgttttgttg ttttgcattg tttatattgc        60
     ccacgttgcc ttgtttttcg cctacctctg gcgacaagct tttctgattg ctcttgccgt       120
     gtgtcttcaa tatttactct tgttggtgtg tgttgtgtcg tgtcatagtc gtcttgttgc       180
     atattgtttt attgtttcaa tttaccatgt ctactcctcc gaatgtaatc ccgccggttg       240
     tcgctccgag catggattta actcagtttt gtcagttcca ggcacaacag atgtcacagc       300
     tcacccaagc tgtacagcaa ctcgcgcagt cacaacaggc gactgctcaa acacaacagt       360
     cgttgccttc gcggccacaa caggatgtac aatctgctcc agtgccacca tttcgacctt       420
     ttatagaaga aaaggaaacg tggcatgaat ggttggtgca gtttacttcg catctgacag       480
     catacaatgt acaaggtact gtgaagcttc ccttttttct cgcgtgtgct ggtgttgtag       540
     tttaccgaac ggcttccaag ttattcccca ctacgtcccc tgagtcagtt tcttatgagg       600
     cgttaatcga ggctttgtct aagtactatg acgaacaagt gcatgtggca gcggcccgtt       660
     ttaaattttt taggagtagg aagcaagaag gtcaaactta tcggcagtgg ctcgccgagt       720
     tgcaaggttt aactcgtgac tgtaaattca ggtgttcatg tggtgaatat tataatgatt       780
     ctatgattcg ggatgtgatt acgcaaaatg tgcctgacaa tcgtattcgc gaacagattt       840
     gcgccgatcc tacattgcaa caggttatgc agatcattga ctttcaggat gtgtgtgacg       900
     ttgctaagac tagctttgat ccggtaggag tgtgtacagt gtcaacagca cgtcagggca       960
     agcgtcaaca gaacggcccc gcgctgacac aaggcgcccg gcccgctggc ctgtcggccg      1020
     ctgggcgtaa acataagcgg tctacctacc ccgctcgcgg aaaagttaag tcctgtcctc      1080
     gctgtttctc aaaacatacg cgtgacaatt gtccttctcg tagcgcaact tgttttgcat      1140
     gtggaaagtt aggccatgtt cgttctgtct gtctccaaca gaataaaggt tccacagaac      1200
     aggcacgcac aggggctcgt tcacatcaca ttaatgttgt gcattctcca tcacctacga      1260
     gtgatacgac tgttgaactt gcgtcatcac agcctgtgtc ttcgcaggct aggtaccgta      1320
     atgtgaataa attgtttgtg gatcttgaaa ttcttggccg gaccgtgacg tttctattag      1380
     atactggtgc ttcggtttcc ttgcttaatc gggacacata caatttgctt ggtcagccgc      1440
     cgttgcagaa ctcttgcacg ttgcttacgg cgtataatgg tcaggacata cctgtgctgg      1500
     gttcatatac ttgtgatgct acataccggt cagttacgaa aacagtgaca tttcaagtgc      1560
     ttcgtgcttc caatagtgca aacatttttg gacttgatct ttttgattta ttcggcctcc      1620
     gaatagtgga taaggttctt gctgtcatgt catatgacca tcgggacacg gtagctaaac      1680
     tgtgtgatga attcagtgac ttgtttcgtg atggtatagg catggcaaac aactttatag      1740
     caagtgtgac attgaaagac gcggcacgcc cccgcttctg taaagctcgt cccgtgccgt      1800
     atgcccttcg ggatcaggtg gcggatctct taagacagtg gcaggctaat ggtgtcattg      1860
     aaccgatcac agcgagtcag tgggcatcgc ccttagtgat tgtgaagaag ccaaatggta      1920
     aattgcgtct ttgtgcagat ttcaaatcta ccgtgaatcc gcagactgtg attgactctt      1980
     accctttacc acgaccggaa gaactgatgg accgcttagg tgcaggccgg tatttttcta      2040
     aaattgatct gcgtgacgca tacttgcagc ttcctctgga tgtgcaatcg caacaagttt      2100
     tcgtgatcaa cacgcacttg ggacttttca agtttttgcg ccttcctttt ggtagtgcat      2160
     cgtctcccgc cattttccag cggtacttgg aacagttgac cgctactgtg cctgcgtgtt      2220
     ctaattattt ggacgatatt gtcgtgtctg ggcgtactcc cgaggaacat gtcaacaatt      2280
     tgcgaagttt attcgaggtg ttgttgcagg caggattaac gtgtaacagg gacaaatgtg      2340
     tgttttttca gtcggaactc gagtatttag gtcatgtcat caatgcacaa ggtatccacc      2400
     cgacacaatc tcatttacag gcaatttgcg accttccacc acccactacc attactgaac      2460
     ttcactctgt gcttgggaaa ctcacttatt acattcgatt tataccaaat gcatcccaaa      2520
     ttgcagcacc cttacatcgt ctgcgacgta agaatgttcc attcgtgtgg tcaaaagaat      2580
     gtgatgttgc ttttcgcaaa cttaaagacg ccttgttgag tgacaactgt ctggttcctt      2640
     ttgatgttac aaaaccggtg atattagccg ttgacgcatc atcatatggc cttggggtgg      2700
     tgctttctca tcagatgggt tccgtggaca gacctattgc ctttgcctct aagcttttga      2760
     ccaaagcaca acagaactac tcacagattg aaaaagaggc ccttgcaatc atttttggtg      2820
     ttaccagatt tcatcagtac ctctatgggc gaaaattcta tctggtcaca gatcataagc      2880
     cattacagtc tctgtttcat cccgctaaac ccattccaca acgtacggca cagaaacttc      2940
     aacgttgggc ccttattctc tcaaactatc agtatgaaat tgtttatcgg cccacaactc      3000
     accatgctaa cgcggacacg ctctcgcggc ttcctgttgg tcctgactct gattttgatg      3060
     cctcagaggc agcttgttgc catatagata cgcaggattc caacgctttg gacaaatttc      3120
     cactagatta cagacaggtt gctcacgcta cagccgcgga cccggattta cagattcttt      3180
     tacaatatat tcgctccggg tggccacgat ccttgaaaca gatttcgaac ccgggtgtcc      3240
     gtcagtattt tgctcgacgt tttgctttat caacacaccg aggcgtcatc ttgcttcgca      3300
     ctgacggcga catgtccaga gtggtaatac ctcaggctct tcgggcgcgt gttcttaact      3360
     tgttacatca aggacattgg ggagtcgtca gaactaaaca gttggcccgc aagcattgta      3420
     cctgggtcgg actggacaaa gacattgaac atatgacgtc acgatgtcgt gcctgtgccg      3480
     acaatcagtc cgctccgcct caacatttca ctgactggcc gaaatccact ggaccatggc      3540
     aacgcattca tgtggattat gccggcccgt tttggaagac caggtggtta attgttgtcg      3600
     atgcttttag taaattcccg tttgtggtcc ccacgaactc tacgacgacg agtgctactg      3660
     tgaaaattct ccagtctata ttttgcattg agggccttcc agaacttctt gtcagtgaca      3720
     atggccccca gtttgtgtcg gcggactttg aacagttttg tgcatccaac gggattcgtc      3780
     atttaacgag cgctcctttc cacccacaat ccaacggaga agcggagcgc ttcgtccgca      3840
     cctttaagca gcagatgtcc aagctgcgca gccaccactc acgggatcag gctctgctgc      3900
     tgttcctctc gtcgtaccgt tcgcagcccc gcgacggtcc ttcgccggcg gagttacttc      3960
     acggacggcg ccaccgcacc ctgttgcagc tgttgcatcc gccgctgcgc ccgccggcct      4020
     ctcggcactc tcgggcaaag tatggcgtca atacccctgt tcttttcaga tgctttacgg      4080
     gggccaaacg ttgggaacgg gggaccgtcg aaaagtgttt gggtagttct atgttcctta      4140
     tacggggtcc gagcggcgtg attcgtcgtc atgcgaacca gcttcgccct tgttatgtgt      4200
     ctgtttctgc ggctggtcct ctgttttcag ctcctgtctc tactcggggc acgccgcctg      4260
     ctggcgcggc gacccgcatc actccggcgt cctcctgtcc agagccgatg gagtgggcgc      4320
     ctgcgggagc gctcctgtcg cagtcgcctg ccgggagcca cggttcgcag ccggcatcac      4380
     caccaccctc cgctgcggcc gccggatctg gggccaccgg cctgtcccag gaagcggccg      4440
     gtcccgcctc gctaccgcag cctgcggttc tcatggacgc ggacgtggag ctgcctcttt      4500
     cgcctggtct tgggggtttt ccacggcgat cggacaacga atgttgggag gcggaccggg      4560
     gccctagacc cgcccaagca tcaaccccgg tcccaccgga ggcttccacg tctgcacctc      4620
     cccccgccat cgtcctcttc ctcggggaca ctatacgacg acggtgagga ggtttggggg      4680
     ggaggag                                                                4687
//
ID   Gypsy-45_LMi-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-225
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 225 BP; 50 A; 63 C; 74 G; 36 T; 2 other;
     tgctgtgtcg atacacatat cgacgccgcg caccaaagat gtggcgcgtc gtctttccgg        60
     gcgcggcgct agaggcgccg taccggacmt gcgcggacgc cgaccaatgg gagtgggcgt       120
     cggcggacct ggscgaggag caacaggagg aagtcagtct gggccgggga gcgacgagta       180
     tcaatcatcg cactaccgat tcctaaataa acctctgata cagca                       225
//
ID   Gypsy-45_MoPha-I repbase;    DNA;    INV; 4803 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4803
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1122-1122 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..4802
FT                 /product="Gypsy-45_MoPha-I_1p"
FT                 /note="SAP domain, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MADSDKDDAAASKKMATSDKDDAAASKKMATSGKGDA
FT                 AVSKKMATSGGDGATTSAVDVNALSAEELRHRLGELKLSTEGSKVRLAERL
FT                 RQALAGNSKGVLTDGEEEEELQAEDVDSLPIAELRVRLRALGLKTIGNKAT
FT                 LRERLKAAIEETDESEDEGNDDGDDDDEDEGEEEEQAAKTGTRRNVRRVVD
FT                 TTRKMSRQETRPIRQTTLSFKDVEDALETFSGDGSENIHRWLINLEETAEL
FT                 CQWTEAQKVIYAKRLLRGSAKLFANFECSSKTWAKLRKSLVSEFSQTVNSK
FT                 QVHTKLSTVKKRNDESYQAYVYRVLEIASHGSIELEAKIQYIIDGIQDEEA
FT                 NKSILYSATTIGELRKKLAQYEVQKSNTKNKLATKNRLLPDKTKKTSQTGQ
FT                 SADNDKQKRCFNCGSKKHIGSDCPDKEKGPKCFKCGQFGHVAPKCTKAADG
FT                 SEAAVTTRARVDAVTSGDKKTYKEVSILGKQVTAVIDPGSDLHLVRASLYV
FT                 TLGAPQLTREIVTFDGVGVSASKTLGRFEADIIIDKLKFTFSFDVIPDHFI
FT                 AHDLLIGGELSDHAEVRLKHRRATLTEIDPEENRSETDSGWREVLSVNVLD
FT                 EPDDETEVEVTHVADKNIKTELEELIAGYQPEQKKDSGVKMRIMLTDHLPV
FT                 YQRARRLSAEHSRIVNDIIQSWIKAGVVRPSSSDYASPVVLVEKGNQEWRL
FT                 CVDYRSLNKKIIKDRNPLPLIEDQLDRLQDAVVFSTLDLRDGFFHVAVDDD
FT                 SIKYTSFIVPDGQYEFLKVPFGLCNSPAVFQRHIRAIFRDLTADGTVLSYL
FT                 DDLIVAAKTKEENLRKLRRVLQVAGEYGLIFNWKKCQFLVTSVDYLGYVIE
FT                 GGRYRPSDKKTLAVAKCPQPTTVKQIQSFLGLTGYFRKFIADFAVIARPLT
FT                 KLLKKDTKFVFGPEQEAAFEQLKMALIEKPVLRLYQVGAETELHTDACMQG
FT                 LGAVLLQRDPNDGLFHPIYYASWKTSPAEEKYTSFELEVLAVIKALKKFRV
FT                 YLLGIPFKIVTDCKAFASTVKKKDSCLRVSHWILLMEQFQYTIEHRSGTAM
FT                 RHVDALSRNPVSTLCVQGHQDSLVARIRKAQEEDVELQKIREAARQGENKM
FT                 FKLAGGEILYHLEEGLDQLVVPRSMQHEVIRLAHERGHFGWKKTEYLLRQE
FT                 FWFPRMREKIQALINNCIKCLLVEKKKGPAEGLLNPIDKGGRPLDTYHVDH
FT                 LGPMPSTKKCYNHIFAVVDAFTKFVWLYPTKSTTADEVVNRLRKQAIVFGN
FT                 PRRLISDRGSAFTSKTFGDYCDEEGIEHVLITTGVPRGNGQVERINRCIIP
FT                 ILSKMSLSNPMEWHKHVDVVQQHLNSSFNRSVGRTPFEVMIGARMRLKDDI
FT                 NLRSLIEKEILEDFENQRSQLRKDARSCLLKIQEENRKTYNRKRKEAQQYK
FT                 NGDIVAVKRTQLGGGRKLCPKFLGPYKIVSVLRNNRYLVEKIGTHEGPNRT
FT                 SSAADYMKPWSSGEEDFLGTEDEPESEDLDLEEADRIEGDTELQNGR"
XX
SQ   Sequence 4803 BP; 1465 A; 940 C; 1350 G; 1048 T; 0 other;
     aatatctggg ggctcgtccg ggatcatcag gccaaggggg cgattctgtt cggtgtaccg        60
     cgtgtgcgta gaaagaccga cggtgtgcgt aacgggtaga cggccacaga aacgttacgt       120
     gacgaaggcg tgatctcgtt ctgtcgagaa atcggtggtg cgaatcgtaa caggcaggcg       180
     gccacgaggg catcgcgagt agtgcgggat cggtttgcgt gctgagtgcg tgcgaggtgt       240
     tcccgcgaaa aacgcaacgg gaaaagatgg cggattccga caaagacgac gcagcggcga       300
     gcaagaagat ggcgacttcc gacaaagacg acgcagcggc gagcaagaag atggcgactt       360
     ccggcaaagg cgacgcagcg gtgagcaaaa agatggcgac ttccggtgga gacggcgcaa       420
     cgacgagcgc agtagacgtg aacgcgctat cggcggaaga attgaggcat aggttaggag       480
     agctgaaatt gtcgacggaa ggcagtaagg ttagattggc ggaaagattg cgtcaagctt       540
     tggctggcaa ctcaaaaggc gtacttaccg acggtgagga agaggaagaa ttacaggcgg       600
     aagatgtcga ttcgttaccg atagccgaac tgagagtgcg cttgcgcgca ttgggattaa       660
     agacgatagg caataaagca acattgcgtg agaggctgaa ggccgccata gaagaaacgg       720
     acgaatcaga agacgaaggc aacgacgacg gagatgacga cgatgaagat gaaggcgaag       780
     aagaagagca agctgcgaaa acaggtacca gaagaaacgt gagacgtgtt gttgacacaa       840
     ctcgaaagat gagtcgacag gagacgcgcc cgatcaggca aacgactcta tcgttcaagg       900
     acgtcgagga tgctctcgaa acattcagcg gagacggaag tgagaacatt catcgctggc       960
     tgattaactt agaagaaacg gctgaattgt gccaatggac ggaagcacag aaggtgatat      1020
     acgctaaaag attgttgcgt ggatcagcca aactgtttgc aaatttcgag tgttcatcta      1080
     aaacttgggc gaaattgaga aagtctctgg taagcgaatt ttcacagacg gtgaacagca      1140
     aacaggtaca tacaaaatta agtacagtta agaaaaggaa tgacgaatcg tatcaagcgt      1200
     acgtctatcg cgtattagaa atagctagcc acggtagtat tgagttggaa gctaaaattc      1260
     aatatattat agatggcatc caagatgagg aagcgaacaa atctattttg tattcagcca      1320
     cgacgattgg agaactgaga aagaagttgg cgcaatatga agtccaaaag agtaatacca      1380
     agaataagtt ggcgacgaag aaccggctgc tgccggacaa gacgaagaag acatctcaga      1440
     ctggacaatc ggcggacaat gacaagcaga agagatgttt taattgcgga agtaagaagc      1500
     acataggtag tgattgcccc gataaggaga aagggccaaa gtgcttcaag tgcggacaat      1560
     tcgggcacgt ggctcccaag tgcacaaagg cggctgatgg cagcgaggcg gcggtgacca      1620
     ccagagcacg agtggacgca gtgacgtcag gagataagaa gacatacaag gaagtttcga      1680
     tactgggtaa acaggtgaca gcggtgatag atccaggaag cgatctacat ttggttcgtg      1740
     ccagcttgta cgtaacgttg ggtgctccac aattgacacg agagatagtc acgtttgacg      1800
     gtgttggcgt ttcggcgagc aagacgttgg ggcggtttga ggctgacatc attatagaca      1860
     agctgaaatt tacattctct tttgatgtta ttcctgacca tttcattgca catgatttgt      1920
     tgataggagg cgaactgtca gatcatgctg aagtaagatt gaaacacagg cgtgctacct      1980
     taacggagat tgaccctgaa gaaaatagaa gcgaaacaga ttctggttgg agggaagtac      2040
     tgagtgtcaa cgtgcttgat gaaccagatg atgagacgga agtagaggtg acccatgtcg      2100
     cggacaagaa tataaagacc gaattagaag agttgattgc aggttatcaa cctgaacaaa      2160
     aaaaggatag tggagttaag atgcgaatca tgttgacgga ccaccttccg gtgtatcaac      2220
     gtgcacgaag attgtcagcc gagcattctc gcattgtgaa cgatataatt caatcctgga      2280
     taaaagctgg agtggttcga ccaagttcat ccgattacgc tagcccggtg gtgctggtgg      2340
     aaaaaggaaa tcaagaatgg agactctgtg ttgattaccg gtcgttgaat aagaagataa      2400
     tcaaggatcg gaatcccttg cctttgatcg aggaccagct ggataggctg caggatgcgg      2460
     tggtgttcag cacacttgac ttgagagatg gattcttcca cgtggcggta gacgacgata      2520
     gtatcaaata cacctcattt atagtaccag acggtcagta tgagttcctt aaagttcctt      2580
     tcggactctg taattcgcca gctgtttttc agaggcacat ccgagcaata tttagagacc      2640
     tgaccgctga tggcactgtt ttatcttact tggacgattt aattgtggcg gccaaaacca      2700
     aagaggaaaa tctgcggaag ctaagaagag tcttacaagt cgctggagaa tacggcttga      2760
     tattcaattg gaagaagtgc cagtttttag tcacgtctgt ggattaccta ggatacgtca      2820
     tagaaggcgg gcgatatcgc ccatccgaca aaaagacttt ggcggtggcc aagtgtcccc      2880
     agcccactac ggtgaagcag attcagagtt ttctgggcct tacgggctac tttcggaagt      2940
     ttatcgccga ttttgcggtg attgcacgtc cattaactaa gctattgaag aaggacacaa      3000
     agtttgtttt tggaccagaa caagaagcag cttttgagca actcaagatg gcgctgattg      3060
     agaagccggt gttacgcttg tatcaagtag gagcagaaac cgaactgcat acggatgcat      3120
     gcatgcaagg actaggagct gtgttattac aaagggatcc gaacgacggt ctttttcacc      3180
     ctatatatta cgctagttgg aagacgtctc cagcagaaga aaagtacact agctttgaat      3240
     tggaggtgtt agcagtaatc aaagcgttga agaaatttcg ggtctacctg ctaggaattc      3300
     ccttcaagat tgtcacggac tgcaaggcat ttgcctcaac ggttaagaag aaagactctt      3360
     gtttacgagt atcccattgg atactgctga tggaacaatt ccaatacact attgagcata      3420
     ggtcgggaac agcaatgcgt cacgtcgacg ccttaagtcg caacccagtg agcacgctat      3480
     gcgttcaagg acatcaagat tcgttggttg caagaattcg aaaggctcaa gaagaagatg      3540
     ttgagttaca aaagatcaga gaagccgcac gtcaaggaga aaacaagatg tttaagttag      3600
     caggaggcga aatactgtac catctagaag aaggattgga tcaactcgtt gtcccgagat      3660
     caatgcagca tgaagtgatc aggttggcac acgagagagg acacttcgga tggaaaaaga      3720
     ccgaatatct tcttcggcaa gaattttggt ttccccgtat gagagagaag atccaggcgc      3780
     tgattaataa ctgtataaaa tgcttattgg tcgagaagaa gaaaggacca gcggagggtc      3840
     tattgaatcc cattgataaa ggaggacgac cgttagacac ctatcatgtg gaccatttag      3900
     gtcctatgcc gtcaacaaag aagtgctaca atcatatttt tgctgtggtg gacgccttca      3960
     cgaaatttgt ctggctctac ccaacaaagt ccacgaccgc agacgaagtg gtgaatcggc      4020
     tgaggaagca agccattgtt tttggaaatc ccaggagact gatctcagac agaggttcag      4080
     cctttacctc taagactttt ggagactatt gtgacgaaga aggaattgag catgtcctga      4140
     ttactactgg agtgcctaga ggaaacggac aggtggaaag aatcaaccgg tgcattatcc      4200
     ccatcctgtc taagatgtcg ctttccaacc caatggaatg gcataaacat gtcgacgtag      4260
     tgcagcagca tctaaactcc tcgttcaatc gaagtgttgg caggaccccc ttcgaggtta      4320
     tgattggtgc acgcatgagg ctgaaggatg acatcaatct acgcagtttg atagagaagg      4380
     aaatccttga agatttcgag aaccagcgaa gtcaactgcg gaaggatgcg aggtcgtgtt      4440
     tgctcaaaat tcaagaagaa aatcgaaaga cgtataatcg aaagcggaaa gaagctcaac      4500
     agtataaaaa cggagacatt gttgcagtca aaaggaccca actaggaggt ggtcgtaagc      4560
     tttgtcctaa attcttggga ccgtacaaaa tcgtatctgt gttgcgaaac aaccgatatc      4620
     tggtggagaa gattggtacg catgagggac ccaaccgaac gagttcggcg gccgattaca      4680
     tgaagccctg gtcgagtggt gaggaggact tccttggaac cgaggacgaa ccagaatcag      4740
     aggacttgga ccttgaagaa gctgaccgta tcgagggcga tacggaattg cagaatggcc      4800
     gag                                                                    4803
//
ID   Gypsy-45_MoPha-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-257
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1209-1209 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 257 BP; 51 A; 42 C; 98 G; 62 T; 4 other;
     tgtagtagca tgaagatttg acgtttgatt ttcgcgcgtg ggattttttc atgagagcgg        60
     tccagagtgc gagacgcggc gttgagatcg ggatgcgtgt cgtgggaggg cgctgcgcga       120
     ggagagsagg kmgtggggag agwgtatggc ggcgaatggt gtgtggtacg agagagcggt       180
     aaatcgttcg ttggaagaag agaccggccg cgttcgtggg cgtgagaatc aaccttttga       240
     cctcttttga tcctaca                                                      257
//
ID   Gypsy-45_MSe-I repbase;    DNA;    INV; 4839 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4839
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 922-922 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..4161
FT                 /product="Gypsy-45_MSe-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNNIPPQFIMQMMQVMQQMSERLNTPAETKIRINDIY
FT                 LPSFDPDTNVGVREWCQHIDKAIETYRLNDFDIRMKVGSLLKGRAKMWVDN
FT                 WMVTTASWAELRHNLITTFEPENRYSRDIVRFREHVYDSSKDISEFLSRAW
FT                 VLWRRVTRDKLSNEDAVEAVIGCVNDERLRIELLNTRATSVPELISVASSI
FT                 RTNKRSHPSSSNMSTAKRSRFSNSIASTSYCRICKRSNHNTSECYFKPNEL
FT                 KSEHRNKTRIDTNDKEVISNQSNQSKMVVCSFCKIPGHTFETCFKRKRSFT
FT                 SNVNYIAGSRLAPIQVKIGLKVFQAIFDSGAECSLIRESVASQIPGKRIET
FT                 ASYLKGIGQFPVLSIATLATIGVIDDINVELQFHIVADYEITTDLLVGMNL
FT                 INHTNLAMMITSDGTRLTRQQIINHVQHVNPIFDKLDCDLTNEEDIVTLRT
FT                 LLSKFEHLFIRGYPTTRVKTGELEIRLKNPNKFVERRPYKLSPVEREKVRA
FT                 IVKELMEHGIVRESKSPYSSPIILVKKKNGDDRMCVDFRELNSNTLRDHYP
FT                 LPLISDQIDQLAQGQFFTTFDMAAGFHQIPIAESSIEKTAFVTPDGLYEYM
FT                 TMPFGLSNACSVYQRCINRALSLLLENAAQVYVDDVLSKCKDIAEGLSNIE
FT                 RILIALQDAGFSINADKCKFFKRSIEYLGNVVSNGEVRPSPRKIDALVRAP
FT                 VPTTPKQVRQFCGLAGYFRKFIPDFSRIMIPLYELTKPGAKWEWNERHEMA
FT                 REKVIQYLTSSPVLTLFQEEAPIQLYTDASSLGFGAVLVQIIAGRQHAVAF
FT                 MSMRTTETESRYHSYELETLAVVRAIKHFRQYLYGRKFTVITDCNALKASK
FT                 HKKDLLPRIHRWWAFLQNYDFEVEYRKGQQLQHADYLSRNPVQLTVNMMTK
FT                 DLDWLKIEQRRDETLRTIMNGMSNNNPRNGYILENNVLKRIVEDPAFGQRF
FT                 CTVVPKSFQWSLINSFHNALKHPGWEKTLQKIKDSYWFDKMSTNIRKFVEN
FT                 CVICRTSKGASGAIQVQMHPIQKPSAAFQVIHMDITGKMGTSNDQQYVIVT
FT                 IDAFTKYVLFYHANNKNPHNTLGALRRTVHLFGTPIQIIVDGGREFLGEFK
FT                 TYCDRVGIDIHAIAPGVSRANGQVERVIATLKNALTMIKNYETEEWHTMLE
FT                 ELQLAINCTPHRVTGVAPLTLLTQRRHCVPPELLSLVNIDDQTVDIEGLTN
FT                 HVLQKMSQNAEKDKQRFNSRKAKIHHFQRGDYVLVKNNPRNQTSLDLKFSE
FT                 PYEIIRILDNDRYLVKKVVGSGRPRKVAHDQLRRAPQPGDQITVSAEDDDL
FT                 SASANEPLPSTSRASMVEQQTEEAAD"
XX
SQ   Sequence 4839 BP; 1649 A; 1054 C; 1007 G; 1129 T; 0 other;
     tcagaagtgg gatcatatgc cacttccgct caacaaccac ctgatgttac tatagaaaca        60
     gcaccccacc atggattgaa taccactagc aacgttgtta cttccttaca agaacaggct       120
     caaccagact tgcactttaa tgcaccgatg aacaacatac caccgcaatt catcatgcaa       180
     atgatgcaag tgatgcaaca aatgtcggaa cgcttaaata caccagcaga gacaaagata       240
     cgcattaacg acatttatct accgtctttt gacccagaca ctaatgtggg agtgcgtgag       300
     tggtgtcaac acatcgacaa agccatcgaa acatacagac tcaatgactt cgacatacgc       360
     atgaaggttg gcagtctctt aaagggaaga gcaaaaatgt gggttgacaa ttggatggtt       420
     actacagcct catgggctga gctgcgccac aatcttatca ctacatttga gccagaaaat       480
     cgctattctc gggacatagt ccgattcaga gaacatgtct atgactcttc taaggacatt       540
     tctgagtttt tgtcacgagc ttgggtttta tggagaaggg tcactaggga caaactatca       600
     aatgaagacg cagttgaagc agtgattggt tgtgtgaatg atgaaagact taggatcgag       660
     ttactgaaca caagagcaac atcagtgcca gaactgatat ccgttgcatc ttcaattaga       720
     acaaataagc gttctcaccc gagttctagt aatatgagta cagctaagcg atcgcgtttt       780
     tcaaattcaa ttgcatcaac ttcatactgc cgcatttgta aaagatccaa tcacaatacc       840
     agtgaatgtt acttcaagcc taacgaatta aaatcggaac ataggaacaa gacaagaatt       900
     gataccaacg acaaggaagt aatctccaac cagagcaacc agagcaaaat ggtggtctgt       960
     tcattttgca aaataccagg gcatactttt gaaacatgct tcaagcgcaa acgttcattt      1020
     acatcaaatg ttaattacat tgctggatca cgactagccc caattcaagt taagatcggg      1080
     ctaaaggttt ttcaggctat atttgacagt ggtgcagaat gctcactcat acgagaatct      1140
     gtagcatctc aaatcccggg aaaaagaata gaaacggcga gttacttaaa gggaattgga      1200
     caatttcccg tactttctat agccacactg gccacgattg gggttattga tgatatcaat      1260
     gtggaactac agtttcacat agtagcagat tatgaaataa cgacagacct cttagttggt      1320
     atgaatctga taaatcatac gaatcttgct atgatgatta cttcggatgg aacaaggtta      1380
     acacgtcaac agatcattaa tcatgttcaa catgtaaatc ccatcttcga caaattggat      1440
     tgtgatctta cgaatgaaga agatattgtg actttacgca ctttgctgag caagtttgaa      1500
     catttgttta tcaggggata tccgacaact cgtgtcaaaa ctggcgaact ggaaattcgc      1560
     cttaaaaatc cgaataaatt cgtggagcgg agaccatata aacttagtcc ggttgagcga      1620
     gaaaaggtaa gagccatcgt gaaggagttg atggagcatg gcatcgtacg tgaaagcaag      1680
     tctccatact ctagtcctat catcttggtg aaaaagaaga atggtgacga ccgtatgtgc      1740
     gtggatttta gagaacttaa ctctaatact ttaagggatc attacccact accactaatt      1800
     tcggatcaaa tcgaccaatt agctcaagga caattcttta caacttttga catggccgct      1860
     ggatttcacc aaataccaat cgcggaatca tctatcgaaa aaacagcctt tgtcacacca      1920
     gacggactgt atgaatatat gactatgcca tttggattga gtaatgcatg ttcagtctat      1980
     caaagatgca tcaacagagc tctgagctta ttgctagaaa atgcggctca agtttacgtt      2040
     gacgacgtat taagcaaatg taaagatata gcagaagggc tatcaaacat tgaacgtata      2100
     ctcatagccc tacaggatgc tggtttttct attaatgcag acaaatgtaa atttttcaaa      2160
     cgctcgatcg agtacctggg caatgtagta tcaaatgggg aggtccggcc aagtccacga      2220
     aaaatagatg ctctagtaag agcaccagta ccaacaacac ccaaacaagt aaggcagttc      2280
     tgtggattgg caggctactt ccgaaaattt attccagatt tttcacgcat tatgataccc      2340
     ctctatgagc taaccaaacc gggggctaaa tgggagtgga atgaacgcca tgagatggca      2400
     cgagaaaagg tcattcaata cctaacatca tccccagtcc ttacattgtt tcaagaggaa      2460
     gcaccaattc aattatacac agatgcaagt agtctaggat ttggagcagt gctagtacaa      2520
     ataattgcgg ggcgacagca tgcagttgcc ttcatgagca tgaggactac tgaaactgaa      2580
     agtcgctacc actcgtacga gttagagacc ttggcggtgg ttcgtgcaat aaaacatttc      2640
     cggcaatatc tttatggacg gaagtttaca gtcatcacag attgtaatgc actgaaggcg      2700
     tctaagcata agaaggatct acttccgaga atccatcgct ggtgggcctt tttacaaaat      2760
     tacgattttg aggtggaata ccgcaaaggt caacaactcc aacacgcaga ctacctcagc      2820
     agaaatcctg tacagctcac agtcaatatg atgaccaagg atctggactg gctaaaaata      2880
     gagcaaagac gcgatgaaac attacgaact ataatgaatg gtatgagtaa taacaatcca      2940
     aggaacggtt acatactaga aaacaatgtt ctcaaacgca tagtagagga tccagctttt      3000
     ggacaacgat tctgcacggt ggtcccaaag tcttttcagt ggagtttaat aaactcattc      3060
     cacaatgcac tgaaacaccc gggttgggaa aagacactac agaaaattaa ggacagctac      3120
     tggtttgaca aaatgagcac aaatatccgt aaatttgttg aaaattgcgt catctgcaga      3180
     acatccaagg gagcatctgg tgccattcaa gttcaaatgc acccgattca gaaaccgtcg      3240
     gcggcatttc aagtaataca tatggacata acaggcaaaa tgggaacatc taacgaccag      3300
     cagtatgtga tcgtcactat agatgcattc acaaaatacg tactattcta tcatgcgaac      3360
     aataagaatc cacataatac gttgggggcc ttgcgacgta cagttcacct atttggtact      3420
     cctatccaaa ttatagttga cggtggaaga gaattcttag gcgaatttaa gacctactgt      3480
     gaccgtgtag gaatagatat tcatgctata gcaccaggag tcagccgagc aaatgggcaa      3540
     gttgaacgcg tgatagctac attaaaaaat gccctaacca tgatcaagaa ttatgaaaca      3600
     gaagaatggc acacaatgct tgaagaactc cagcttgcaa taaactgcac tcctcatcgt      3660
     gtaacaggtg tagctccact tactttactc actcagcgca ggcattgtgt gcctccagaa      3720
     ctgctcagtc tcgtaaatat cgacgatcag actgttgaca ttgaaggact tactaaccat      3780
     gttctacaaa agatgtcgca aaatgcagaa aaggacaagc aacgcttcaa ttctagaaaa      3840
     gcaaaaatcc atcatttcca acgaggtgat tatgtactcg ttaaaaataa tcctcgaaat      3900
     caaacctcac tggatctcaa attcagtgaa ccgtacgaaa taataagaat tttggacaat      3960
     gatcggtatc tcgtcaagaa ggtggttggt tcagggcgtc ccaggaaggt tgctcatgat      4020
     caacttcgtc gggcacctca acctggagat cagataaccg tatcggcgga agatgacgat      4080
     ctctcagcat cagctaatga acctttacca tctacttcgc gagccagtat ggttgagcaa      4140
     caaactgaag aagcagctga ttaaaaaggg tatgttttta tttttaaatt taagcacaac      4200
     aaacaatcgc aacgataaca tagtaccaca gagtacgcaa agataacaaa gtaccacaga      4260
     gtacacttcg ataacaaagt accacagagt acgcaacgac atagcaccac agagtgcgca      4320
     acaaccatat agcaccacag agtgcgcaac aaccatatag caccacagag tgcgcaacaa      4380
     gcacagagtg cgcaacaacg acatagcacc acagagtgcg caacaacgac atagcaccac      4440
     agagtgcgca acaacgacat agcaccacag agtgcgcaac aacgacatag caccacagag      4500
     tgcgcaacaa cgacatagca ccacagagtg cgcaacaacg acatagcacc acagagtgcg      4560
     caacaacgac atagcaccac agagtgcgca acaacgacat agcaccacag agtgcgcaac      4620
     aacgacatag caccacagag tgcgtaacaa cgacatagca ccacagagtg cgtaacaatg      4680
     acatagtaca aagtacagga aaatgcaagt taaactaagt aagtacaaac ttatgtaaca      4740
     cacaggtaca cagacactga tctcagaaag aacattttat gacggaactc tacgatggaa      4800
     cggcaggtgc agagcacgca ccgccggtca gaacggccg                             4839
//
ID   Gypsy-45_MSe-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-378
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 971-971 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, often inserted in (TA)n
CC   microsatellites.
XX
SQ   Sequence 378 BP; 143 A; 58 C; 63 G; 114 T; 0 other;
     tatcggcgca acgaccagtt aattaagtta tttagataag tttttgcatg aaattagttg        60
     aaagtaaaat tgtaatcatc aattgattgt tagaaattaa taaaacgcat gtaaacaata       120
     aaattaatag atttttgtaa acacaacccc actccagagt ttggtataaa tacaagtgac       180
     aattatggca tcgggcattc caactctagc agtcgaatga agcagagctc ctatttattt       240
     gaataaaaag tgttatacct gaagttatag tttaaattta ttattaaaat ggaaaatgag       300
     aataacaatg tacaaaatga cgtcagcatt gctgacgtca tcgtttttaa aaacaaccgg       360
     gcgtcagacc ctccgtca                                                     378
//
ID   Gypsy-45_SiCu-I repbase;    DNA;    INV; 4094 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4094
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5066-5066 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..3971
FT                 /product="Gypsy-45_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADQAGVKVEKTAVTKSVVRHQVPHPCPLEIHSGNVA
FT                 ENWKRFRKQYEFYEVASGYDAKNSKVRVAALLSIIGDPATDLYSTFEWTSD
FT                 TERWEWDQVIKKFEDYCIPRKSLLFETFKFGKRLQEPGEGVDMYVTSLRKL
FT                 AESCDFKDKDRRIRDQIVLGMKDLKAQAEILREEDPSLVDVINFIRSHEAA
FT                 MKQCNQMQQQQPDDLEQVSRVKKNEKKRNYRKGPAQEQKSQQAEVKIECKF
FT                 CGRKHEKKKEKCPAWKKTCSSCGKENHFAKLCKTKDKPDSKDAYHVFSVAD
FT                 KDVTQKTVTFTVTETGEKVTYVIDSGAPFNILPIQDYERVTGDLDRKDIVP
FT                 EKINIVAYGGNKWPTLGFAWIHVKLENDTKFRMKSWVVNVRAKPLLGLRSC
FT                 EIMGIMKINLCDQEKVTSVPVQAISEDTVMKKYQDVFTGLGKLEGKYHIAM
FT                 RDDVKPVVHAPRTVPVALREPVKKKLEELEKSGVIAPVTTPTDWVSSMLIK
FT                 KETNKLRICLDPKDLNTAIKREHYPLPTFEEVATRLGKAKVFSLLDAKSGF
FT                 WHVELEEESSYLTTFNTPFGRYRWCRMPFGICSAPEVWQRRMHEFAEGLRG
FT                 VEVIADDFLVVGCGDSRDEADRDHDRNLIALLERAKERNLKLNPDKLRLRM
FT                 DELRYMGHVLTPEGVKMDPHKLEAVMKMPRPTDAKGVERFLGYVQYLAKFL
FT                 PFLSEKAEPLRRLTDKGAKWEWKKIHEEAFENLKKMTTTAPVLAYYDLSKP
FT                 VTIECDSSEKGLGTCLLQDGRPVAFASRALTDTEKRYAQIEKEMLAIVYSC
FT                 IRFDQYVYGRLVEVHSDHKPLESIFKKPIWKSPKRLQRMLLALQRYNLDVK
FT                 FKKGSQMYIADTLSRAYLPAPANVNSVEEITSQDFEKVNATEDSPNTVKGF
FT                 EEIRAVTREDDVMQKLCKYILHGWPEKRAEVDQECQPYFHVRDELVLDSDL
FT                 VFKGERVLIPCKLRRSIVEKIHSTHGGIEGCLRRAREHVYWPQMNAQVKEY
FT                 VAKCEICNQFRPEQQKEPMMSHDVPSRPWSTVSSDIFKLRGVNYVVVVDHY
FT                 SNYFEYARLTTETTAQVTSHLKKIFATHGIPERMISDNGPQYRSEEFQVFA
FT                 RSWGFEHITSSPGYPQSNGRAENAVKICKSLMEKALEGKTDFFLALLDWRN
FT                 TPLASTAASPVQLLYSRRTRTLMPTLPNKLQPEVPSGVKDKIEVAREKQKS
FT                 YYDRSARPLSELQPGAVIRMKLPGRDKWAKGIVVKGEGKRSYSVKVSGGVY
FT                 RRNRRQLIAVHENPPEEDTPAPEPQQQQAAPRRSKRIQQRGGN"
XX
SQ   Sequence 4094 BP; 1326 A; 853 C; 1087 G; 828 T; 0 other;
     tggtgacaga ggttaaagtt agatttcgaa gataaatcaa gagtaaaaca atcagtgtga        60
     tggcagatca agcaggagtg aaagtcgaga agacagcagt gactaaatca gtagttagac       120
     accaagtccc ccatccgtgt ccattggaga tccacagtgg aaacgttgca gaaaattgga       180
     agagatttcg caaacagtac gagttctacg aggtggcctc tggatacgac gccaaaaata       240
     gtaaggtccg agtggcagcc cttttatcga ttattgggga tccagcaact gacctgtaca       300
     gtacttttga gtggaccagt gatactgaaa gatgggaatg ggaccaagtc atcaagaaat       360
     ttgaagacta ctgtatcccg agaaaaagct tgttgttcga aacgttcaag tttgggaagc       420
     gcctgcagga accaggagaa ggagtcgaca tgtacgtgac ttctttgaga aaactggctg       480
     agagttgtga ctttaaggac aaggacagaa ggatccgaga ccaaattgtg ctaggaatga       540
     aggacctgaa agcacaagcc gagatactga gggaagaaga ccccagtctc gtggatgtca       600
     tcaacttcat tcgatcacac gaagcagcaa tgaagcagtg taatcaaatg caacagcagc       660
     agccagatga cctagaacaa gtcagccgag tgaagaaaaa tgagaagaaa cgtaactacc       720
     ggaaaggacc agcccaggag cagaagtctc aacaggccga ggtcaagatc gagtgcaaat       780
     tctgtggtag aaagcacgaa aagaaaaaag aaaagtgccc tgcctggaag aagacgtgca       840
     gcagctgtgg aaaagagaat cattttgcca agctctgtaa aacaaaagat aagccagata       900
     gcaaagacgc ttatcatgtg ttcagcgttg cagataagga tgtcacccag aagaccgtaa       960
     cgttcaccgt gaccgaaacg ggggagaaag taacgtacgt gatcgatagt ggagcaccct      1020
     tcaacatttt gccaatccaa gactacgaac gagtgacagg ggaccttgac agaaaagaca      1080
     tcgttcctga gaagattaac atcgttgcgt acggtggtaa caaatggcca acgctggggt      1140
     ttgcatggat ccatgtgaaa ctggaaaatg acacgaaatt cagaatgaag tcgtgggtag      1200
     ttaacgtcag agcgaaacca ttattaggcc tgagatcctg tgaaataatg ggaataatga      1260
     agataaacct gtgtgaccag gagaaggtta catctgttcc agtacaagct ataagtgaag      1320
     acacagtaat gaagaaatac caggatgttt tcacaggact gggcaagctg gagggaaaat      1380
     atcacatcgc catgagggat gacgtgaaac cagttgtcca tgctccaaga acagttccag      1440
     tagcactgcg tgagccagtc aagaagaaac tagaagagct cgagaagtca ggagtcatag      1500
     caccagtgac tactccaact gactgggtgt ccagcatgct tatcaagaaa gaaacaaata      1560
     agctgagaat atgcttggat cccaaagacc tcaacacagc aatcaagcga gaacactatc      1620
     cgttaccaac ttttgaagag gtggcgacga gattggggaa agccaaagtg ttcagcctct      1680
     tagacgcgaa aagtggattt tggcatgttg agctggagga ggagagcagt tatctcacta      1740
     ccttcaacac accatttgga agataccggt ggtgccgtat gccgttcgga atctgctcag      1800
     cccctgaagt atggcagcgt cgtatgcacg agtttgctga aggactgcgt ggcgtggagg      1860
     tgattgctga cgattttcta gtggttggtt gtggagacag cagagatgaa gctgacagag      1920
     accatgaccg taacctgatt gccttactag aacgagcgaa agaaagaaac ctgaaactga      1980
     atccagacaa gctgagatta aggatggacg agctgaggta catgggccat gtactcaccc      2040
     cagaaggagt caagatggat ccacacaagt tggaggcagt gatgaagatg ccacgtccaa      2100
     ccgacgccaa gggagtcgag cgcttcctgg gatacgttca gtaccttgca aaatttcttc      2160
     catttctctc tgagaaagct gagccactga gaagactcac ggacaaggga gccaagtggg      2220
     agtggaagaa gatccatgaa gaagcatttg aaaatcttaa aaagatgacg acaacagcac      2280
     ctgtgttggc ctactatgac ttgagtaagc cagtcacaat agaatgtgac agcagtgaaa      2340
     aaggactggg aacatgtcta ctacaagatg gaagacctgt agcgtttgcg tctcgagcat      2400
     tgaccgacac agagaaaagg tatgctcaga tagagaagga gatgctggcg attgtgtact      2460
     cctgcatcag atttgaccag tacgtgtatg gacgactggt ggaagtgcac agtgaccaca      2520
     agcccttgga gtccattttc aagaagccga tatggaaatc accgaaacga ctccagcgca      2580
     tgttgttggc tctgcaacgg tacaacctgg acgtcaagtt caagaaagga agccagatgt      2640
     acattgccga cacgctcagc cgagcctacc tgccagctcc cgcaaacgta aactcagtcg      2700
     aagaaataac cagtcaagat tttgaaaagg tgaacgcgac tgaagactcg ccgaacacag      2760
     tcaagggatt tgaagaaatt cgtgcagtta ctcgtgaaga cgacgtcatg cagaaactgt      2820
     gcaagtacat actacatgga tggccagaga aacgagcgga agtcgaccag gagtgtcaac      2880
     cgtatttcca tgtacgagac gaattagttt tggacagcga cctagtgttc aaaggagagc      2940
     gtgttctcat cccatgcaaa ctgagaagaa gtattgtgga gaaaatccat tctactcatg      3000
     gtggaataga aggatgcctg agaagagctc gagaacacgt ttactggccg cagatgaacg      3060
     cccaagtgaa agaatacgtt gcaaaatgcg agatttgcaa ccagttccgg ccagagcaac      3120
     agaaggagcc catgatgagc catgatgtac caagcagacc atggtcaaca gtgagcagcg      3180
     acatatttaa attacgaggt gttaactatg ttgttgtagt tgaccactac agtaactact      3240
     ttgagtacgc ccggctgacc accgagacta cagcgcaagt gaccagccac cttaagaaaa      3300
     tttttgctac acatgggatt cctgaacgaa tgataagcga caatgggccg caatacagat      3360
     ctgaagagtt ccaggtattt gcgagatcat gggggttcga gcatatcacc tccagcccag      3420
     gttaccctca atccaacgga cgcgcagaaa atgcagtgaa gatttgcaag tctctcatgg      3480
     agaaagcact tgaaggcaag accgacttct tcctggcatt gttggattgg agaaacaccc      3540
     cgttggcatc aaccgcagcc agtccagtgc aactgctgta tagtaggaga actagaaccc      3600
     tgatgcctac cctaccgaac aaattacaac cggaggtgcc gagtggagta aaggacaaga      3660
     tcgaagtcgc ccgagagaag caaaagtcct attacgaccg cagcgcccgc ccattatccg      3720
     agctccagcc aggcgcagtt atccgaatga agctgccggg gagagataag tgggcgaagg      3780
     ggatagttgt aaagggggag gggaaaaggt catactccgt taaagttagt ggaggggtat      3840
     accgcagaaa cagacggcag ctaattgccg tgcacgagaa tcctccagaa gaagacacac      3900
     cggcacctga gccacagcag caacaagccg ctccgcgaag gtcaaagagg atccagcagc      3960
     ggggaggaaa ctgattagtt aggcctctga acttgttagc taggaaatgt ttaaattata      4020
     aatgtatgat ttgaaatatg ttcctgtgtt aagtaattta gaagataaat gtacttattt      4080
     caaaagaagg agga                                                        4094
//
ID   Gypsy-45_SiCu-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5122-5122 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 299 BP; 96 A; 67 C; 51 G; 85 T; 0 other;
     tgtgatgaga tgtgcttgtt ctgcgatcta gtgagtaatg cataatgtaa agacatgctt        60
     gctcgtgcca tgcggtgaag accacacgag cagaaagaag tgatcatgag accagatcgt       120
     ctctagcaat agagccctaa acatgtacat agtacatcat ctcaactttg gctacttgta       180
     aataaagtac aattaaatag taaaccctga gttcctaaat tcactgatta acctttcacc       240
     tcaccataat catctccgcc ctctgcatat tctgttacta caaacagcat attattaca        299
//
ID   Gypsy-45_SpEx-I repbase;    DNA;    INV; 5727 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5727
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4113-4113 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           761..1969
FT                 /product="Gypsy-45_SpEx-I_1p"
FT                 /translation="MADVLELCYKELKCIKTYLIKIGPKRRQGNVLERKLC
FT                 ESKEIYDKYIDIIKIITDDIKKGNIGQSEKILIDKFCIDFESLYKQILDLC
FT                 AMSDTSSSEDTKMESFNLKVALTLVPLMTNDNECSLKQLIDNIEYYSSLLA
FT                 SDECKKKLVQFVLKSRLSQHAKLQLQTDYASVHDMISDMRTVLLPQKSPFA
FT                 IQNKINQLKQNDLSVQDYGNQLSELFVDLTVSQAEGNLDTYKMIKPLNEKM
FT                 IIKRFADGLRNRRLSTIISARNYGSIKDAIQGAKDEETSITGSYSGSGEIL
FT                 SMYSSRGRQQHNRGRYVNNNYNRTYYNRGRNNDFSVRRGYYNHRGGQQTYQ
FT                 QSRGAVQRGRGSPWRGRGKSYYRNRSNQGISQPPVEANRHAVNVLTSSENE
FT                 VLENEFFRE"
FT   CDS           1926..5606
FT                 /product="Gypsy-45_SpEx-I_2p"
FT                 /translation="QAPKMRYLKMSFFVNNKVIFATDTNYYIKLSCKNKTY
FT                 SWLVDTGATISALKYEYVLEQNIPVQKEDIVINGIGGKVHAIGYVCLTLSA
FT                 GGHHLKRNKFYVFDTLPCRANGIIGQDFINKHSSILDFSNHTITLLTQSNL
FT                 KIVLPLLIHNDGIEIFPRCESIHYLKTDFTEECVVHSKEISDGIFLAGCIA
FT                 TPVNGRIPIKILNTTDRSCTLTDINPCIEKISLYNVCNFDKSERDASRVKQ
FT                 LFSVLNLKHLNKEEQISIEKLCAKYSDIFYLPGDRLTTTSIYKHSITLKPN
FT                 VSSVFTKPYRLPHSQKGEIKQQIDKMLKEGIIEPCRSEWSSPVLLVPKKSD
FT                 GTSPKKWRLVIDYRKLNNCIEDDRFPLPNITEVLDSLSGSVYFSHLDMYQG
FT                 YYNIELEQESRKYTAFCSGQYQMTRMPMGLKTSPGSFSRMMTMAMSGLTYE
FT                 KCLVYLDDLVVFGRNLDSHNKNLLDVFERLRKINLKLNPQKCNFLKKELLY
FT                 LGHVVSKNGVLPDPDKIKIVQNYPCPTNVDETRRFVAFVNFYRKFIPNFAE
FT                 LAYPLNKLCCKNATFIWDEKCQSSFDKLKEKIISPPVLQYPDFSEQNEFNL
FT                 QTDASKYAIGAVLSNKDGKPVSFASRTLNKSEINYPTIDKELLAIVWAVKH
FT                 FRPYLYGKHFKIFTDHRPLVSLFSMKDPSSRLFKFRLLLEEYDFTIEYVKG
FT                 SENAAADALSRISITCNDLKHMHESCVSVMTRAQKRNLIDNTSKIGLCDTP
FT                 TVWSDQPNAVSSHNTRTLNESVELRFADACKLETFRKSGVIGKESKTFIYI
FT                 PNERTVFVKYVSSPSQISPAEFVRELHDFCESLSITEVYIIKTNKNNIFIE
FT                 KLLNEVNNLNTRTGPHLHIVKDVQRIENKDDKRVILNDFHLLPTSGHAGMR
FT                 RMFNNIKKYYYWVGLENDIQEFIKRCDKCQKQKYSSHNIKQPMEITSTAHS
FT                 AFEKIYIDLVGPLDKDDYNYSYILTLQCELTKYIEAYPLVTKRTEEVAKAL
FT                 VHNFILRYGVPKVIATDRGTEFLSSIFKEVCNLLHIKQLNSTAYHHQSIGA
FT                 LENTHKHLNSFLRIQTDNHPETWSTWLPFWSFCYNTSVHSATKYSPYELVF
FT                 GKKCSLPSNLTNRVDPLYNIDYYPFELKFRLQKSQKDARDNLLKSKLIQKE
FT                 RYDRNINPIVYHPDDLILVKNNMCNKLDSVYSGPYKVVSDESPNVKIIKNG
FT                 KIDVIHKNRTKLYHHNQ"
XX
SQ   Sequence 5727 BP; 2041 A; 916 C; 1091 G; 1678 T; 1 other;
     tggcgaccct gccagcgcgc atcgctgtgc gatcgcgtta ccgacatcgc cgtaccatat        60
     agggactgtt aaactaaaac aataccagta aagccgagct aagatggatt attataatta       120
     tttagtaacg ttgattgcgt tcgcggctgc aacaagtcga attcagttcg gtgcttacga       180
     cataataccg aatatcgtgt ctattaaaaa tgggaggtac gcaaactaaa gaagagaccg       240
     tcgtggtaca aaacgcagcc ggagggacaa ataatacgca cctagaggag gtgagatttc       300
     atatttctac catcaccata ctgatgagta ttataacact ggttctggga ctcggcgtgc       360
     tatattttct tctacgcatg tatcggcgtt gtcacgtccg ttggatcaat caggagttat       420
     acaggagtgc gttatctaga agatctggag cgaggcaatc aggaccttgc ccagagaaag       480
     gacggccgaa agctgaaata gtatgacagc aacaaaaata ggcgttaccc aacatattca       540
     agtgaaagtg gcaaaaagtg atagtgataa aagttaaagt gataaattcg gtaaattcag       600
     tgcggaaata aaatataaac tgatatgcta tagtacggga atcttatact tatgaagaca       660
     caggcatcgt tgaatggact ttgaacttta tttgttaagt gcgtaatcat agttaataat       720
     atgttattcg tagtgtttaa aaaactaata atggttagtg atggcagatg tcttggaact       780
     ttgctataaa gaattgaaat gtattaaaac atatttaatt aaaataggtc caaaacgtag       840
     gcaaggaaat gttttagaaa gaaagttgtg tgaatcaaag gaaatttatg acaaatatat       900
     tgatataata aagattatta ctgacgatat aaagaaagga aatataggac aaagtgaaaa       960
     gatattaata gataaatttt gtatcgattt tgaatcattg tataaacaaa ttttagactt      1020
     atgtgctatg tcagatacga gtagcagtga ggatacaaaa atggaatctt ttaatctgaa      1080
     agtagctctt actttagtac ctttgatgac aaatgataat gaatgttcgc ttaaacaatt      1140
     aattgataat atagagtact acagctcgct attggctagt gatgagtgta aaaagaagtt      1200
     agtacagttt gttttgaaaa gtaggttgtc tcagcacgct aaattgcagt tgcagacaga      1260
     ttatgcgagt gtgcacgata tgataagtga tatgcgtaca gttttactgc cccaaaagtc      1320
     accatttgca attcaaaaca aaataaatca attaaaacaa aatgatttat cagttcagga      1380
     ctatggtaac caactttcgg aactttttgt ggatctgacg gtatcgcaag ccgaaggtaa      1440
     tttagataca tataaaatga ttaaaccctt gaatgaaaag atgattatca aaagatttgc      1500
     cgatggcttg cgaaaccgcc gtctttcaac tattatttca gctagaaact acggatcgat      1560
     aaaggacgct atacaaggtg cgaaggatga agaaacatcc ataaccggct cttattcggg      1620
     gtccggcgag atattaagta tgtattcgtc tagaggacga caacaacaca accgtggacg      1680
     ttacgtgaac aataattata accggacata ttataatagg ggtcgtaaca atgatttcag      1740
     tgttcgtcga ggctattaca atcatcgagg ggggcagcag acatatcagc agagccgcgg      1800
     ggcagtacaa cgaggccgag gatcaccatg gcgcggtaga ggtaagtcat attatagaaa      1860
     ccgtagtaac caagggataa gccaaccccc cgtagaagcg aatagacacg cggttaatgt      1920
     tttaacaagc tccgaaaatg aggtacttga aaatgagttt tttcgtgaat aacaaagtta      1980
     ttttcgcaac tgatactaac tattatatta aattatcttg taaaaacaaa acatattctt      2040
     ggttagttga caccggtgct acaatttcag ccttaaaata tgaatatgtg ctagaacaaa      2100
     acattccagt ccaaaaagag gacattgtca taaatggaat tggtggcaaa gtccatgcaa      2160
     taggatatgt ttgtttaacg ttatctgcgg gtggtcatca cctgaaacgt aataagtttt      2220
     atgttttcga tactttgcca tgtcgggcta atggcatcat cgggcaagac tttattaata      2280
     aacatagctc catattagat tttagtaacc ataccataac attgctgact cagagtaatc      2340
     tgaaaatagt tttaccttta ttgattcata atgacggaat tgaaattttt ccaagatgtg      2400
     aatccattca ttatttgaag actgatttta cagaagaatg tgtagtacat tctaaggaaa      2460
     ttagtgatgg aatatttttg gcaggttgta tagcaacacc agttaatggt cgaataccga      2520
     taaagatatt aaatacaact gataggtcat gtacattgac agacattaat ccgtgtatag      2580
     aaaaaatatc tttgtacaac gtttgtaatt ttgataaatc agagcgtgat gctagtagag      2640
     taaaacaatt attttcagta ctgaacctta aacatcttaa taaggaggag caaatatcga      2700
     ttgaaaaatt atgcgcaaag tactcagaca ttttttattt accaggagat agattaacta      2760
     caaccagtat ttataaacat tctattacgc ttaaaccaaa tgtatcttct gtatttacaa      2820
     aaccgtatcg tttaccacac tcacagaagg gagaaattaa gcaacaaatt gataaaatgt      2880
     tgaaagaagg tatcatcgaa ccttgtcgta gcgaatggtc aagtccagta ctgctagttc      2940
     caaaaaagtc agatggtaca agtccgaaaa agtggcggct agttattgac taccgtaaac      3000
     tcaataattg tattgaagac gaccgwttcc cacttcctaa tattaccgaa gtacttgatt      3060
     cgctatctgg ctcagtttat ttttcacatt tagatatgta tcaaggttat tataatattg      3120
     aactggaaca ggaaagcagg aagtacaccg cattctgttc aggtcaatac caaatgaccc      3180
     gtatgccaat gggtttaaag acaagtccag gatcattttc cagaatgatg accatggcta      3240
     tgtctggcct gacatatgaa aaatgtttag tttatttaga cgatttggta gtttttggca      3300
     gaaatttaga tagtcataac aaaaatctgc tagacgtttt tgaaaggttg agaaaaatta      3360
     atttaaaatt aaacccacag aaatgtaact tcttaaaaaa ggaactccta tatttaggcc      3420
     atgtggtatc taaaaatggt gtattacctg acccggataa aattaaaatt gtgcaaaatt      3480
     atccatgtcc aactaatgta gacgaaacga ggaggtttgt tgcatttgtt aatttctata      3540
     ggaaattcat tcccaacttt gctgagcttg cttacccact taacaaattg tgttgtaaaa      3600
     atgctacctt tatatgggat gaaaaatgtc agtcatcatt tgataagcta aaagaaaaaa      3660
     tcatatctcc accggttttg caatacccgg atttttcaga acaaaatgag tttaatcttc      3720
     agacggatgc ttctaagtac gcaattggtg cagttttgtc aaacaaagat ggcaagcctg      3780
     tatcttttgc cagtaggaca cttaacaaat cggaaataaa ctatccgaca atcgacaaag      3840
     aattgctggc tatagtatgg gccgtcaaac attttcgccc atacttatac ggaaaacatt      3900
     tcaaaatttt caccgaccat agacctttag tctcattatt tagcatgaaa gatccgtcaa      3960
     gtagattatt taaatttagg ttgttattag aagaatatga ctttacgata gaatatgtta      4020
     agggttcgga aaatgcggct gcagacgcat tgtctcgaat ttccataaca tgtaatgatt      4080
     taaaacatat gcacgagtcg tgtgtttcgg ttatgactag ggctcaaaag agaaacctaa      4140
     ttgacaatac ttccaagata ggactttgtg acacgcctac agtttggtct gatcagccaa      4200
     atgctgtaag cagtcataat actaggacat taaacgaatc agttgaatta cgttttgctg      4260
     atgcatgcaa attagagaca tttaggaaaa gtggagttat aggtaaagag agtaaaacat      4320
     ttatatacat tcctaatgaa agaactgttt ttgttaaata tgtatcttct ccatcgcaaa      4380
     tatcgccagc cgaatttgtg agagagttac atgatttttg tgaaagccta agtattacag      4440
     aagtttatat aataaaaacg aataagaata atatttttat agaaaagcta ttaaatgaag      4500
     taaataattt aaatacaagg accggtccac atttacatat agtaaaggat gtacagcgta      4560
     tagaaaataa agatgacaaa cgagtgatac tgaatgattt ccatctctta cccaccagtg      4620
     gccacgcggg tatgagacgg atgttcaaca atataaaaaa gtattactat tgggtaggtt      4680
     tagaaaatga tatccaagag tttataaaga ggtgcgacaa atgtcagaaa caaaaatatt      4740
     catcgcacaa tatcaaacaa ccaatggaaa taacatcaac agcacatagt gcctttgaaa      4800
     aaatatatat tgacttggta gggcctcttg ataaagatga ttataattat agttacattc      4860
     tcacgttgca gtgcgaactc accaaataca ttgaggcata tcccttagtt acaaaaagaa      4920
     cggaagaagt agcaaaagcg ttagttcata attttatatt aaggtatgga gtaccgaagg      4980
     tgatagcgac ggatcgaggt actgagttcc tgtcatcaat attcaaggag gtatgtaatc      5040
     tattacatat taaacagtta aactcaacag catatcacca ccaaagtatt ggtgctttgg      5100
     aaaacacaca taaacatttg aattcatttc tccgcattca aacagataac catccagaga      5160
     catggagtac atggctccca ttttggtcat tctgctataa tacatcagtt cattcagcga      5220
     ctaaatattc tccttacgag ttagttttcg gtaaaaagtg ctctttgcca agtaatttga      5280
     ctaatagagt tgatccactc tataatattg attactaccc atttgagttg aagtttagat      5340
     tgcaaaagtc acagaaagat gcacgagaca acctactcaa aagtaaacta atacaaaaag      5400
     aacgatatga cagaaatata aatcctattg tttaccatcc tgatgattta attctagtta      5460
     aaaacaatat gtgtaataaa ttagatagtg tttactcagg accatataaa gttgtatctg      5520
     atgagtcacc taatgtgaaa ataattaaga atggcaaaat agatgtcatt cacaagaaca      5580
     gaactaaatt gtaccatcat aatcaataga taattatact tattaggtat aagctattat      5640
     gtagcatata gtactagcta taagttttta ttttatgaaa ataaaacaaa attgaaattt      5700
     tattttattt tacccctcca tgggagg                                          5727
//
ID   Gypsy-45_SpEx-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-155
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4174-4174 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 155 BP; 45 A; 24 C; 27 G; 59 T; 0 other;
     tgtagcgtag gtatgtgtag taatatgtcg atgtatgtta tatctgtgtg tgtaatcaat        60
     caattatatt aatcatgtat agtattcaat aaaggacagt attatttggg catccgtgac       120
     tatcatttct ctccgctaat accttcaacc ttaca                                  155
//
ID   Gypsy-45_TrVa-I repbase;    DNA;    INV; 4309 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4309
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 290-290 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..4223
FT                 /product="Gypsy-45_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEFNRPSPLSLDGNLSDNFRRFSQNFLNFMKATGSDK
FT                 KESSIKAAILLNLIGEEASDLFLTFNVPKDADNEYDYTAVLKSFEDYCNPK
FT                 TNVVIERFKFNSRYQQIGEPFSSFLTDLKKLIKSCEYKEQEESLLRDRIIL
FT                 GIEDKSLQERILREPDLSLEKTIKVCRATEMGKLQVEEIQNRSSTRDICAF
FT                 SKNPNLVSASPTYADETYSCKKCGRVHSRKNCPAYGQTCAYCKGLHHFVIG
FT                 CKVKQSKNNGRNFPKKDNNNGANASLSNVNCVSEENDCFYIGKISASGFDS
FT                 NVSAKQWHETVCLNNIKYSSFKLDTGAETNIIPLNVFNFLLQKDSSLKLSG
FT                 TNVKLRAFGGNEITPVGTVKLNCKVNKTERVIEFFVSDAESDIGILGLPSC
FT                 VAMNLLKRVNIVSETDMLSKEELVKKKEFIDNNIDVFQGTGNFKVKCHFDL
FT                 QPNATVTVKPPRRIPIALRPRVKSALDNLEKQNIITKVDSPKSFVSNLVVV
FT                 EKPNGSVRLCIDPQDLNTATKRAPHLIPSIQDITCKLEGKCVFSVLDLKDG
FT                 FYHVELDKESSEHCVFSTPFGLYKFLRLPFGLNIAPEAFQKLNERIFEGIP
FT                 GIIIYFDDILIAAKNVKEHDDILRLVIERARNFNVKFNVIKFQYRVKIVKF
FT                 FGHIFSAAGIQPDPERIKALIAIEAPKTRKELQRVLGLFNYLHDFVPNMSS
FT                 LTAPLRSLLNKNVIFCWLPIHNETLEKLKVLISENPVLANFDEKKPITLQC
FT                 DSSKDGMGFTLMQECKPVFYGSRSLTETQKNYSQTEKEMLSILEATKKYHN
FT                 FLYGQRSIEVQTDHKPLVSIMSMPICNINNSRLQRIKLKLLKYDLKLKYVP
FT                 GKNMFVADLLSRSYIKSSVSDDPDLIETIHSLSKYAQISEERKSEIESATK
FT                 ADETLASVIKFVKNGWPKDKTLIPSGFVKFYFQFQSRLTVEDNLLFLDHRI
FT                 VIPVSLRNKILLLLHEPHMGMEKTKMKARQTVYWPNINVDIEKQVAKCAVC
FT                 EKFRNNNIKEPLLSHTPPNLPFEKVGTDLLQSKGKPYIVLIDSYSKWIELL
FT                 PLKSMLASEVIEKLKLIFSVHGIPKTVCCDNQPFNSFEFKTFARDWDFQLC
FT                 FSSPRYPKSNGLAERAVQIAKNILKKSSNHDEVLIGLLEYRTTPVKGTNVS
FT                 PSQALMSRLLRTKIPIASTALKPRVEKGIRQAILDSQQKSAEYYNQTARFK
FT                 EDLKGPDVLFRDNNNKEWKPAKLIGKAPEPRSYFIKNQNGNILRRNSHHLK
FT                 NSSIFKDDSLFSGDSLFSTCSHDHNLVVAPPPPLDPPPAPAQPAEHNPIAE
FT                 PPPAPNLPLQPVVGKTKFGRVVKPPVRYIAEF"
XX
SQ   Sequence 4309 BP; 1501 A; 773 C; 788 G; 1247 T; 0 other;
     tggcgctgcg gtttcggaag aacatcgtgt gagtttttga tagatatgta atcagttcga        60
     agttaagtgc ctctaatacg tgcgtggtgt ggtgattata acctcgaaag tttcgcgccg       120
     aatatgcgac tcgtgcattt ctgtttctaa aaaaaaaaaa aaaaaaaaaa aaattgcgaa       180
     atctctctat tatggaattt aatcgaccat ctcctctctc cttggatgga aatctgtcag       240
     ataacttccg acggttcagt caaaatttct taaattttat gaaggcaacc ggctctgata       300
     agaaggagtc cagcatcaag gcggctattc tcctgaactt aattggtgag gaagcatccg       360
     atctgttcct aacatttaat gtccctaagg atgctgacaa tgaatatgac tacactgctg       420
     tcctgaaaag ctttgaagat tattgcaacc cgaaaactaa tgttgtcata gaaagattca       480
     agttcaattc acgctaccaa caaattggcg aacctttcag ctctttttta actgacctaa       540
     aaaagctaat taaatcttgt gagtataagg aacaagaaga gagtctccta agagacagga       600
     ttattttggg tattgaggat aaatctttac aagaaagaat actacgggaa ccggacctat       660
     ccctcgaaaa aactattaaa gtttgtcgtg caactgaaat gggaaagctg caggtggaag       720
     aaattcaaaa cagatcatcg actcgtgata tttgtgcttt cagtaagaat ccaaaccttg       780
     tatctgcgtc accaacttat gctgatgaga cttactcgtg taaaaaatgt ggtcgagtac       840
     actcacggaa aaactgcccg gcttatggcc aaacttgtgc ctactgtaaa ggtttacatc       900
     attttgtcat aggatgcaaa gtaaagcaga gtaaaaataa tggtcgcaac tttcctaaga       960
     aagataataa taatggcgct aatgcctccc tgtctaatgt taattgtgta agtgaagaaa      1020
     atgattgttt ctacataggc aagatatctg catcaggttt tgatagtaat gttagtgcta      1080
     aacagtggca tgaaactgtt tgtctcaata atattaagta ttcatctttt aaattagata      1140
     cgggtgcgga aaccaatatt attccgttga atgtgttcaa tttcttgctt caaaaagata      1200
     gcagcttaaa gttatctggc actaatgtca agttaagagc ttttggagga aatgaaataa      1260
     ctcctgttgg tactgtcaag ttaaattgta aagttaataa aactgaaaga gtaatcgaat      1320
     tttttgtctc ggatgctgaa agtgacatag gaattttagg gttacccagc tgcgttgcca      1380
     tgaatttact aaaaagagta aatatagtca gtgaaactga tatgttaagt aaagaagaac      1440
     ttgtgaaaaa aaaagaattt attgataata atattgatgt ttttcaaggc acaggaaact      1500
     ttaaagtcaa gtgtcatttt gatctgcaac cgaatgcaac agtaacagtt aaacctcccc      1560
     ggcgaattcc cattgcttta cggccacgag ttaagtcagc tcttgataat ctagaaaaac      1620
     agaatatcat tactaaggta gattctccta aaagttttgt tagtaaccta gtggtggtag      1680
     aaaaacctaa tggaagtgta agattgtgta tcgatccgca ggatttgaac acagcaacaa      1740
     aaagagctcc gcatctaata ccatcaattc aagacataac ctgtaaactt gaaggtaaat      1800
     gtgtattctc tgttttggac ttgaaagatg ggttttatca tgttgaactt gataaagaat      1860
     catccgaaca ctgtgtgttt agtacaccat ttggtttgta taaattttta aggctcccct      1920
     ttgggttaaa catagctcca gaagcctttc aaaaactaaa cgaaagaatt tttgaaggta      1980
     tccctggtat aatcatctac tttgatgaca ttttaattgc tgctaaaaat gttaaggaac      2040
     atgatgatat cctcagactg gttatagaaa gagccaggaa ttttaatgta aaatttaacg      2100
     ttatcaagtt tcagtatcgg gttaaaattg ttaaattctt tggtcatatt ttttctgcag      2160
     caggcataca accagatcct gaacgtatca aagccctaat agcaatcgaa gctcccaaaa      2220
     ctagaaaaga acttcaaaga gttctagggt tatttaacta ccttcatgac tttgtaccta      2280
     acatgtcctc tttaacagcc ccactaagaa gtttgttaaa caaaaatgtt attttctgtt      2340
     ggttacccat tcataacgaa acattagaaa agcttaaagt tttaatttct gaaaacccag      2400
     tgcttgcaaa ttttgatgaa aaaaaaccta taacgttaca atgtgatagt tctaaagatg      2460
     gtatgggctt cactctcatg caagaatgca aacctgtatt ttatggatcc agaagcttaa      2520
     ctgaaactca aaagaactac tctcagactg aaaaggagat gctcagcata ctagaagcaa      2580
     caaagaagta ccacaatttt ttatacggtc aacgttccat tgaagttcaa acagaccata      2640
     agcccctagt ttcgattatg tctatgccca tttgtaacat aaataacagt aggcttcaaa      2700
     gaataaagct aaagcttcta aaatatgacc tgaaattaaa gtatgtccca ggaaaaaaca      2760
     tgtttgtcgc tgacctgctg tctcgatctt atatcaaaag ttctgtctcc gatgaccctg      2820
     atctaatcga aaccatacat tcactgagca agtacgctca aatttctgaa gaaaggaagt      2880
     ctgaaattga gtcagcaaca aaggctgatg aaactctggc ctctgtcata aaatttgtta      2940
     aaaatggatg gcctaaggat aaaacattaa tcccctcggg atttgtgaaa ttttattttc      3000
     agtttcagag taggttaaca gttgaagata acttattgtt cttagatcat agaattgtaa      3060
     ttccagtttc cttacgaaac aagattttgt tactccttca tgaacctcac atgggaatgg      3120
     agaaaaccaa aatgaaagcg cgccaaacgg tttattggcc taatattaat gtagatattg      3180
     agaagcaagt agcaaagtgc gcggtctgtg aaaaattccg taataataat attaaggaac      3240
     cattacttag tcatacccca cctaatctgc ctttcgaaaa agttggaact gatttacttc      3300
     aaagtaaagg caaaccttat attgtattaa tagatagtta ctcaaaatgg attgaactct      3360
     tgcctttaaa gtccatgctg gcaagtgagg tgatagaaaa gttaaagctt attttctcag      3420
     ttcatggtat tcctaaaact gtctgctgtg ataaccaacc attcaactca tttgagttca      3480
     aaacttttgc cagagattgg gattttcagt tatgcttcag tagtccaagg taccctaaat      3540
     cgaatggctt ggcagaaaga gctgtgcaaa tagctaagaa catattaaaa aaatcgagca      3600
     atcatgatga agtcttgata ggacttcttg agtatcgcac caccccagtt aagggaacaa      3660
     atgtgtcccc ttcccaggca ttaatgagta ggttgttaag aacaaaaatt cccatagcaa      3720
     gtaccgcatt gaaaccgaga gtggaaaagg gaataagaca agctatattg gactcccaac      3780
     aaaaatcagc agagtactat aatcaaaccg cccgtttcaa agaagacttg aaaggtcctg      3840
     atgtcttgtt tagagataat aataataaag aatggaaacc agctaagcta attggtaagg      3900
     cccccgagcc tagatcatac tttatcaaaa atcaaaatgg caatatttta agaagaaatt      3960
     cacatcattt aaaaaacagt tcaattttta aagatgacag tctgttttcc ggtgacagtc      4020
     tgttttccac ctgttcacat gatcataatc ttgtcgttgc cccaccccct cctcttgacc      4080
     cacctcctgc tcctgcacaa ccagcagaac ataatcccat tgccgaacca ccccctgctc      4140
     ctaacttgcc cttgcagcct gttgttggta aaaccaaatt tggtcgggtt gtaaagcccc      4200
     cagtccgtta tattgctgaa ttctgatttt tgtaaaaaaa aaaaaaaaaa aaaaaaaaaa      4260
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagtga aaaaagaga                  4309
//
ID   Gypsy-45_TrVa-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-45_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-170
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 349-349 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 170 BP; 52 A; 27 C; 33 G; 58 T; 0 other;
     tgttagatgt tagacttggc aacgctgcga cgtgccaaaa gcagtgtgac ttttagttaa        60
     cctcgtgagt tgtgtatggt cgctccggtg tattgacatt aaataaaata tgtactttta       120
     aatctactta ttgtattctt aataataatg acgaataccc gaatataaca                  170
//
ID   Gypsy-460_AA-I repbase;    DNA;    INV; 4163 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-460_;
KW   Gypsy-460_AA-I; Gypsy-460_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3037-3037 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4163 BP; 1244 A; 1008 C; 930 G; 981 T; 0 other;
     ttggtgaccc cgacgtgatt ccggctcgag tgtccgaacg tttttcctgc tcaataagta        60
     agaaaacaca caaattaata cacttgggcg caactggctg tgtgtcgatt ttttgctatc       120
     gtttgcagat cgccattttg actacctaca cgacggaatt tcgccaaggc gcccatccac       180
     agcgtttaca aaatggcgga tgaacagcgc ttaaaagatg aaatcgtcca tctacaacaa       240
     caactgcaag ccgcacgagc agccgctgca aacaactccg cgattgtgaa cagcggtatt       300
     aatgtaaaca atgctcctga cagctcgatc aacaaagttg ccatcaaaat cgggccgttc       360
     tggaagcgcg atccgaccct ctggttcgct cagctggaag cgcaattcac gctgaaccaa       420
     atcacacgag aagacacccg ttattatcat gtcctggccg ccatagattc ggaaatattg       480
     gcatgctgct cggacatcat tcgagatcca ccagtcgacg gcaagtattc ggcgattaag       540
     gatagaatca tcagagaata cagcatcagt gagcagaatc gtatgcagca gctgctgcgt       600
     gggtgtgaac tcggcgatcg caaaccgtca cagctcctac gtgaaatgcg ggatctagcc       660
     agagatgtta tcaccgatga aaagattatc aaatctttat ggatgcaaca acttcccgaa       720
     actactcaag ccgtcctgaa agtatcagaa gctaatctac aactttcgca gcttgccgaa       780
     caagcagata agctcgctga catcaccata acaagaacag tttcatccgc tggtgccctg       840
     tgggatgaaa acaaagatat cggctttgag gaactgcgca agcaagtttc tgtgctttcc       900
     gacgaaatcg ctgcttttcg ccaaggacga ggtcgttccc ggaacaggag tttcggcaga       960
     caacctggtg cccgaagcag ctcccgagat aatcacccgt attgttttta tcatcgaaag      1020
     ttcggcgctg acgcaagaaa ctgtcgaacg ccctgtcagt tcaaagcaaa aaactaagac      1080
     agctgcattc gacgacgggc gaaggcagtg agattctaca atcccgtcta atcatccagg      1140
     atcccacgac aaactacaag tttctcatcg acaccggcgc agacctttcg gttctgccgt      1200
     gcacaccgtg caagaagctt aagcctacac caggtatgaa tttgtatgca gctaatggtt      1260
     cccgaattgc tacgtatgga accgaaatat acaaaccaac tttcggcctc cgccgaagtt      1320
     ttccgtggcg gttcatattg gcggacgtga cttctccaat cctgggtgcg gattttctga      1380
     aacattacgg gctaatggta gacttgcaag gcaaatgctt agtagataga atgaccaaca      1440
     tcaaggcacg aggtcaaatc aatttgatca ctggaggact tttcggattg aaaacatact      1500
     cttgcagtag cgactatggc ggtttactaa gcgagttctc cgatgttact aggccacgcc      1560
     ttcccaagca ggaggtaaaa cacggagtca aacattccat caaggttgac gggcctccct      1620
     gtcattctaa gttccgccga ctaccaccgc ataagctcga agctcttcgg aaggaattga      1680
     agctgtttct agagctcggg tacatccagc cttcaaaaag cccgtattcg agcccagtac      1740
     atttggccac caaaacgttg caaaacggtg acgtcaaata tagacttgta ggtgattaca      1800
     agcgtctcaa cgattccacc gtcgcagatc ggtatccatt accgcacatt tacgacattt      1860
     gtcaaacgct caaaggtaag aacgtgttct ccgtgattga tttagaacgg gcttactatc      1920
     aaatccctat gcacgaatcc gacattgaga aaacagccat aataacgcca ctgggattgt      1980
     atgaatttct tgtaatgcct cctggactga aaaattccgg ccagacattc caaagattca      2040
     tcaacaacat attctttgac atgccgttcg ttatagggta cctagatgac ctactcatct      2100
     cttcgtcatc cgaagaggaa cacaaaaagc acctacgttt ggtttttgaa agattacggg      2160
     agaatggact acaaatcaac gtagacaagt gccagctagg taaagaaaaa gtacggttcg      2220
     tggggcagct gataactacc agtggttgtc aaccgattcc tgaaaaggtg cgtgcagtgg      2280
     cggagtaccc gaagcccgac acggtacaga aactgagacg tttcttggct ctagtaaact      2340
     actatcgtcg atttcttcca cacgccgccg aagctgaaat tccactgcgc aaactgatgc      2400
     cttcaaacaa gaagaatgat aaaactccta tcctctggaa cgatgaagct gaagatgcct      2460
     tccaaaaatg taaacatcgt ttagtagaag caacgaagct agactactat gatccggatg      2520
     ctcagctatc cctaatggtc gatgcgtcgg atttagctgc cggagccgtg ttgcaacaga      2580
     gatccagggg tgcatggaaa ccattaggat atttctccgt caaattcaat gaccgtgaac      2640
     agcgatattc tacatacgat agagagcttc tagctgtata tctcggtgtc aaacatttca      2700
     aggacgtcat tgaagggcgt aatcctgtaa tatttacgga tcataaacca ctaacgtttg      2760
     cattcaaaca agatgcaaat aagccaagcc cacgacaaca acgaatgttg tcttttataa      2820
     gcgagtacac tacagatctg attcatatct ccggcgtcga caacattcca gccgacgttc      2880
     tctcacgagt ggatgccatc tggttaccgt ctacgatcga ccatgctgat tttgctagaa      2940
     gacaggactg cgacgaagag ttgcaaaatt ggcgaaacag caatcctgat gttaaatgct      3000
     tgaaacattc tcggctcgct gtcgaattgc tttgccagca acaaggagat aaaatacgca      3060
     tttgtgttcc tagcatatac cgaaaaacga tcttcgaaca ggttcatcgc ctagcgcatt      3120
     cgggggtgaa ggccacacaa gctcaaattt tgcagcacta cgtttggcct ggagttaaga      3180
     aggacgtttc aaattggata cgagcttgta acgaatgtca acagaacaaa gtctccagat      3240
     atacgaagtc gtttcctgat caaatcgaaa ttcccgatga tagattcgag catgttcaca      3300
     tcgatatagt tggtcccttg ccgatatcaa acgggatgcg gtacattttg acaatgatcg      3360
     accgatttag cagatggcct gaagcagcgg ctattccaga catgaccgca gaaacagtcg      3420
     ccaaaacctt cgttgaggtg tgggtcgcac gatttggaac tccatcaaaa ctgacatcag      3480
     atcagggtcg acaattcgag tcgcaactaa tgaaggaact aaacgtactc ctagggctcg      3540
     aacgggtgcg caccacgccc tatcacccac aatcgaatgg gatgattgag tgttggcacc      3600
     gaccactcaa aacagcttta gaatcacaca aatcaagttg gaccgatgcg ttgccgttag      3660
     ttctgcttgg tttaagaact gcgatccgag gagaaacatc agcatccgaa atgctatacg      3720
     gtacaacaat tcgcatacct ggagctatga tagaaaagca aacacttcga ggcccgacag      3780
     aatcctttgt agccaaccta cgggaaaaaa tgaattcaat agtacctcgc gctgcatcta      3840
     ataacgatac aaatcgacag atattcatcc cgaaggatat tggaaactgc acacacgtgt      3900
     ttttgagaac agataaggtt cgagccgctc tggaaccacc attcaccgga ccatacgagg      3960
     tcctttcaag gagcaataaa atgttgacaa ttaaagttaa aaacaaacca gtaacagtct      4020
     caatcgacag agttaagcca gcctactttg tcaaggatcc tgaattagcg ttagatcatc      4080
     acagggctag ttcggaccgt ataactaaaa gcggacatca tgttagattc cggatccagt      4140
     aattttctag gaagggggag tac                                              4163
//
ID   Gypsy-460_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-460_;
KW   Gypsy-460_AA-I; Gypsy-460_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3067-3067 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 163 BP; 48 A; 47 C; 26 G; 42 T; 0 other;
     tgcggtgcgc agccaaactg gctacactgc ggcatccata ccaataaaac ctccaccaag        60
     ctcaactcag ttcagatcac attgttcaca cgataacacc agcaaataaa ttgctccgtc       120
     tagaattagt tgtaatcgcg gcgtttttat tctctacacc tta                         163
//
ID   Gypsy-461_AA-I repbase;    DNA;    INV; 3955 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-461_;
KW   Gypsy-461_AA-I; Gypsy-461_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3955
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3955
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3038-3038 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 3955 BP; 1075 A; 953 C; 904 G; 1023 T; 0 other;
     ggtgaccccg acgtgatcgc cgtcagattt ccatccggtt tactaaaaaa cgcgagaact        60
     tttcagtctc ttcgaacgtt agtgtgttct aacctcaaat atggcaaatc cggaagcgaa       120
     tgtggacgtg gcaaatccgg ccaacaacat tggagcaagc gccgtcgttt cagtgaagtt       180
     gccagagttt tggaaagcag accctgaaat gtggtttgcc caagctgagg cgcagtttgt       240
     gttgggcaac gtcgtcaagg atgatacaaa attctaccac atagtggcaa aactggatca       300
     gtcagtgatc tgccacgtca ccgatcttgt gtccgctcct ccacagcaag acaaatacaa       360
     gagcatcaaa gaccgcctga tttcccggtt tgcgctttca cctggagtgc gcctagaacg       420
     cttactagga tcatctgatc ttggtgatat gcgtcctact cacttgctag ccaaaatgca       480
     agaactggca gctggcttaa acgtgaatga cgatcttcta aaaatgctct tccttcaacg       540
     aatgccgcaa catattcgac cagtgctaac catcagtgac ggtacattgc cgaaactagc       600
     ggagatggca gacaaattaa tcgaaacacc tcgagtggca gctgtcgtcg caaccccctc       660
     ttcaacttca aatgctctgc tcgaccaaat gaatgaactg aaagaacaac tggaagttct       720
     tagcactgag ttccggcaac tgaaacaagg ttccgtggtc cgccgaagag gtcgctctac       780
     atcacgctcc agaagcaccg gtgctggtga tgttctatgt tggtatcatc gtaaatatgg       840
     acgtcaagcc gatcggtgcc gtcagccgtg ttctttcgat gcttcaaaaa actagagcaa       900
     ggctcacctg aatcggcaca ggtgagtgaa tcgttttcta gccgacgact gatgttgatg       960
     gacaaaacaa gtggcctgcg attcctggta gataccggtt cagatgtttc tattatacct      1020
     gctacgacta cagatcggct tagtgagccg gttccgtttt tactgcacgc agcaaatgga      1080
     acgtccataa aaacatactc gaccaaattc gtatctacgg atcttggact gagaaggaaa      1140
     ctaacgtgga atttcctggt agcagatgtt agtcaccccc tgatcggtgc tgattttctg      1200
     gcccactttg ggttactagt cgacctgcgc aataaaatac taatcgactc cacaacaaac      1260
     ttgcaatcga aaggcagcgt gatgacgacg agtatccaca gcataacaac ggtgaacgtg      1320
     aaccatccct tccatgacct acttgttgag ttccgccaag ttacacagcc aacaacaatg      1380
     cgaagcactg taaaccatga agtttcgcat catatcgtca ctaaaggtcc acccgttgcg      1440
     tccaaagccc gccggatgca cccggaaaag ctgaaagcag ccaaggagga atttgcgtta      1500
     atgatggagt tggggatctg tcgtccgtcg agcagcagtt gggcgagccc gctccactgc      1560
     gttccgaaga aagacggcca atggagattt gtgggggact accgtcagtt gaacagggtg      1620
     acgacgccgg atcgttatcc ggttccccat gtccacgatc tgctaaattc gctacaaggt      1680
     aagaacattt tctccgtaat cgacttagag cgagcctacc atcaaatacc agtcgaagag      1740
     gaggatatac ctaaaacggc ggttatcacc ccttttgggt tgtttgagtt cacccgtatg      1800
     cagttcggcc tctgtaacgc cagccagacc ttccagagat ttatgaataa aatactgggg      1860
     gatctggact ttgttatcgt gttcattgat gacgtctgca tcgcatcatc ttccgcagaa      1920
     gaacatgagc aacacgttaa aattgttttg gagcgtttac aaaaacatgg tatggttatc      1980
     aacgtggcca agagtcgatt tgcccaggac gaagttgact ttcttggata ccgggtgaat      2040
     cgagatggaa taagcccttt gccttcaagg gttcaagcag ttgctgatta tgcacgtccg      2100
     aatacagtga aagaacttcg acgatttctt gcactagtaa atgtgtacaa acggttcatt      2160
     ccgaaagcag tcgacctaca gcttgaactt cgtaagcttg tcccagataa cagaaagaat      2220
     gacatcagga aattgcagtg gaatgaatct acctcaacag cttttgaccg ttgcaagcaa      2280
     tctttggcgg aatctgtttt attgcactat ccggattcaa ataaaacgtt ggcactcatg      2340
     attgatgcat ccagttgtgc cgctggggcc gtactgcaac agttttctgg atcttcatgg      2400
     caaccactcg ggttctattc cgaaaagttt tcggaagcgc aaagaaaata ttcaactttt      2460
     ggacgagagt tgacagccat gaaaatggcc gttaaatatt ttcggtattt tctggaagga      2520
     aggaagttta ttatctttac cgaccataaa ccactgacca ccgccatggg tgtaaattct      2580
     tccagtcgac ttccccatga ggagagatac ttacggtaca tttctctttt tactactgat      2640
     attcgtcata tcagcggtat ggataatacc gtagctgatg cgttatcccg gattgaagca      2700
     gtcagcatga tcaatctttc atctattgct gaagatcaaa ttcatgatga ggaattaaaa      2760
     actctccaga aatcttcagc gctcaagata gaacccatac gcattccgaa cgtatcaaga      2820
     cctgtctact gtgatgtttc aatcaagaac aaatatcgtc ctttcgttcc agcaaaacat      2880
     cgattggcag tgattcacca attgcatggc atggcacacg ttggagttcg agcaaccaag      2940
     cggctcgttt cggatcgatt cgtatggtct catatgaata gagacattac taagttcgtt      3000
     cgagaatgtc aagattgtca actttccaaa gtaacccgcc atactacgtc cccgttagga      3060
     tcgttcgatc caccgaaatg caggttccgt cacatccatg tcgaccttgt tgggccgtta      3120
     ccgccgtcca gagaaaaccg ttatctactc acgattctgg atcgtttcac tcgttggcct      3180
     gaagccatac ctctgccgga catgactgct cctactgtag ccagggcgtt gacacaccat      3240
     tggatttcgc gcttcggttc accggagaca attacaacgg atcaagggcg tcagttcgag      3300
     tcggaacttt ttcgagaatt gacgtatatt ttaggagcac accatattcg gactaccgcc      3360
     tatcacccac aatccaatgg gatggtagaa agatttcatc gcactctcaa atcggcgctc      3420
     atgtgcaaga atactagaaa ctggtgtgat gaactaccgg ttgttttgct cggtcttcga      3480
     actgcttttc gcgatgaatt aaagtgttct tcagcggaac ttctgtacgg acaacctctt      3540
     cgagtccccg gggagttctt cgatccacct gaaagctctg tcgatcgctc cgattttgct      3600
     gcgacattac atgatacctt tttgagacta cgaccaccca aggctaatca ccatggtaaa      3660
     ccaacaatct tcatacataa tgatcttcag aagtgtaccc aagtatttgt tcgagttgac      3720
     gcggtaagac gctctttgca gcaaccttac gaaggtccat atcaagttgt gcagcgacat      3780
     ggaaagtatt ttgatgtgct tatagccgga aaacagcata gagtaactgt ggatcgattg      3840
     aagcctgcgt atggttgcga tgataatatt tccaactacc catcggagga tccatccacc      3900
     aaagttacgc cttctggaca ccgtgtaaga ttcttggcgt aactggaggg gcgcc           3955
//
ID   Gypsy-461_AA-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 25.10, Created)
DT   04-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-461_;
KW   Gypsy-461_AA-I; Gypsy-461_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-186
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-186
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3068-3068 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 186 BP; 65 A; 39 C; 36 G; 46 T; 0 other;
     tgtgggtatc aataagatgc accctagata tcccgttctt caagagccac cctaggctgt        60
     caagagaaaa cagtaatgaa taaacacgaa tgaagtgaag acgcgttgta aacattggaa       120
     gagaaataaa tcgttttatt agttaaatcg tctgacactc atagtaatcc gttccgatcc       180
     cccaca                                                                  186
//
ID   Gypsy-462_AA-I repbase;    DNA;    INV; 5644 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-462_;
KW   Gypsy-462_AA-I; Gypsy-462_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5644
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5644
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5644 BP; 1749 A; 1065 C; 1390 G; 1440 T; 0 other;
     atttggcgca gtcggtacga tttcatggtg agtatttcca tatcacggac tgtgttgaat        60
     aatcaataac ccatgcggaa aaagtgaaat agttaatttt attgccacgt gatttttttt       120
     tcctaacggt aaattggttg aattgtactg tataacctgt tttgtgctct tgtggtgtaa       180
     gatatcattt gaaagatgcg tgtacgatat tatgaaaagc tgaaaatcaa aattttaccg       240
     caaagtgatg aacatgtgat caaaagttag tttacaaaat ggcggaagct gaatcgattg       300
     agaaaaaaag agatggaaat aaaagatgcg agaccggttg atggccgtag cgcacagatt       360
     gtatatgaag caaaaaaaaa aaaaaaaaaa aaacaatcaa gaagagaaag gctacaccta       420
     gtgcacatga cgaatatgag gaaaagatgc gagcccagtt gataactgca gcgcccagtg       480
     ttcgaggaaa aaaaagcgaa tccggctaaa gaccgtaaag caaaaaaaaa aaaaaaagat       540
     gcgagcccgg ttcatagccg cagcgcacac catgccgagt gaatgggaga gaaaaaaatg       600
     cacattggtg tttggaagaa tgtgaggtag gttgcgtgta gtgcacactg taacaggaaa       660
     aaaaaaaaac gaagtgtacg ttgtgttgaa tgacaatgaa agagagaaaa gatgcgtgtc       720
     cagttgatga ccggttgtac ataaggagat taaaaacaga aaaaaatatc tgagagcaca       780
     gtgaatccgg ctgagggccg ttcaaagccg caacgcacac catgccgagt gaatgtgaga       840
     gaggaaaaca tgcacattgg agtatggaag aatgcgaggt aggctgattg tagtgcacac       900
     tgtgatatga gaagcatacg ttgtatcgag tgacgatgaa aaagagaaaa gaagtgtgcc       960
     cagttgacga ccggtagcac ataaggtgaa aattaatttg gaaaatttag tttgagagcg      1020
     atttattagt gtgagtgacg tctttggtgc ttacgactcc aaacgctttc aatctaatta      1080
     cacatacatg tagtgagttt gtatagattt gtaaaaagtg aaagtaaact cactcagttt      1140
     ttggttttaa cagaacgtgt gtggaggtag ttcaattata ttccctatca ttgatgattt      1200
     ttgatgtgtg ccaatgtatg atgtagatgg aaaaaacgaa ttttgttttt aattctaaat      1260
     ttgcagatgg aatctgagaa ccatttccag ttggatccct tcaacgacgc tgccgatgct      1320
     tccaatctac gacgagagtg ggaggaatgg catcgagcgt gtgagatcgt tctggagctt      1380
     aaaaacattg aatcgcagca ccaaaaactg cttttcatgc tggctcgtgg tggaagagga      1440
     ctgcagagaa tttatcatca tctcgcacca gtggcagggg aagttaatcc agaacccgtt      1500
     aaagtcccgt tcgctccgca agaaattccc gaatatgaca acgctgtcaa gcgtttgaat      1560
     gcgtttttcg tgggaaaacg caatgagagg gtggagcttg aagtttttcg ttcgcttcgc      1620
     cagaaggctg gagaatcttt caaccgatac atcctgagat tgcgcacgca agctgtcggt      1680
     tgtgattttc gcgaccgtga agaaaaggaa ctgttgcagc agataaccgt cggtgcagtc      1740
     gacgaaaggg tgagagacaa aggcctcgaa ggcaccatga aattggatga gctagtgaac      1800
     tatgcgatca accgagaagt attgcgggag cagaaagaaa aagcgtatcc gttcagatcg      1860
     gagtccagtt ccgtagcctt ggtaaaacag gagtggaaca agaggacaat gtcaagggga      1920
     ggaaatccgg cacagcagtt caagcgcgat cgtaagtgga caggccgcga tcggtctact      1980
     atcgaatgca gccgctgcgg ttcttggaga catctgcgtg attcgaagga ttgcattgct      2040
     cgaagtgcca cgtgcaataa gtgcggggat ctcggccatt ttgcaaggaa gtgcccagta      2100
     ggccgatatg ccccaacgaa gaatcgtttt tcatggaaga agtccgaagc agccaatgcc      2160
     gtgaggggtg gaagcagtcc tgattccgga ccgagctatt ctacccgcta tgaggataat      2220
     ggaccatcaa aggtagaatg aacttttatt tttttttgtt acattcatga tttcactata      2280
     tgctgacgaa tgaattcatt attttgttga attagaaaat gaattcaatc aaataaaact      2340
     acactcaact aatatttttg tattgaatta tttattcggc caggcaaaca tgaacaatgg      2400
     aactattgtg ggatttattg atcagcttcc agttgtattt ctgatcgact ctggagcaat      2460
     gatcaacacg gttacggaac aaatatggga aaaactgagc tctagtgagg caagattgtt      2520
     taaaaagaaa ttccaatgcg atcgacaatt tactgcatat gcttccgaca cacctcttca      2580
     agttgtcgct attttcgaag catggattac tatcaacgaa acaaaaccca gaacctatgc      2640
     tgaatttttt gtaattcaag gagcacaaaa atgcttactt agcaaaagaa ccgctgagga      2700
     tcttagagtc ctgaaagtag ggctagaggt tttcagcatt gcaccgaaga aaaacgcgtt      2760
     tccgaagttt cctaatgtgc ttttaaagtt atccattgac tacacggttg cacccaggaa      2820
     gttggcgtat ctcagaatac ctgtagctat ggaggataag gtcaatcgaa aacttcaaga      2880
     aatgttggat gctgatataa ttgaacccgt aatcggccct tctgagtgga tctcgcctat      2940
     ggtggtggtt ccaaaaggaa ccgatgatat tcgattgtgc ataaatatgc gataccctaa      3000
     tcaagccata caaagagaac actacccttt gccactcatt gacactcttc tgaacaagct      3060
     taaaggggcg gttgtgtttt ctaagcttga cattacgtct gcctattacc acgttgagtt      3120
     acatccggaa tcacgggaaa taacgacctt tatgacaggt aaaggtttga tgcgctttaa      3180
     gcgacttatg tttggcataa attgcgcacc ggagatattt cagcgaatca tgtgcgagat      3240
     gctggctggt atcgaaggcg tgattgttta catcgatgac gttgttgtgt ggggtgcgac      3300
     gcctgtggag cataatgagc gtcttcaaaa agtattatca atccttgaag ataatcacgc      3360
     attgctaaat aaggacaagt gcgtattcga ggtccaggag cttgagatac tagggttcaa      3420
     aatcagtgga aatgggatca gtcctgcaga tgacaaagta gcagccatcc gtaacttcag      3480
     gcaaccagag tcaaaggagg aagtccgtag ttttttagga ctgataaatt tcgtggggca      3540
     gttcattcct cacctttcct caaggactga agcactgcgg agttttatta gaggcgaggt      3600
     agattttttc ggtgctgatc agaaaaacgc atttgatgac cttcgaaatg agttagcgag      3660
     tgccgttcat cgactgggat tcttcgaccc aaaagaccca accgagttgt acgttgatgc      3720
     atctgcagtg ggccttggtg cagtcttgac gcaaagggat agtacgaatc aaccaaggat      3780
     catcagcttt gcgtcaaagg gactcacgaa gacggaaaga atttatccac aaacccagcg      3840
     tgaagccttg gctgttgttt gggctgtgga aaaattctac tcgtacttgt tcggtataca      3900
     tttcacggtg tatacggacc ataagacact ggagtatatt tttaacggaa aacatcaaga      3960
     aggaaagcgt gcatgttcac gtgctgaggc atgggcgttg cgactgcaac cctatgattt      4020
     tacagtggtg cacgttcctg gttcagacaa catttccgat gtcttctcaa gattatgttc      4080
     tcaatctgat gcgccgttcg atgaggcttc agaacactac gtttgcgaaa tcagagatgg      4140
     gctatcggct atcactttgg acgagattaa gcgagaaacc gctcttgatg atgaacttaa      4200
     ggaagttgca cgggcagttg aaacgcaatt atggcccaaa cacctgtttg cttatcaagc      4260
     tttcgcaaaa gagcttggtg ttctagatgg cgtcgtggtg agagaagata gaatcattct      4320
     tccttcgaag ttacgacaaa gagcgttgga cattgctcac cgaggccatc ctggtgtggt      4380
     atcgatgaaa cggaatctga gggagaatgt gtggtggccg tatatggatc gtagcgttga      4440
     gaatcacgta caagagtgtg ctggatgtgc ttcagttagg caacaaggac cgccagaacc      4500
     aatgatccgt aaggaaatgc ctgaccgagc atggcaagat ttggctttgg attttttctc      4560
     ggcaaaagaa tgtgcgacgt ttttagttgt agtcgattac tacagccgat ttttgactgt      4620
     gattgagatg aaaacaacta ctgcattgaa gaccatcgag gccttggagc gtatcttcag      4680
     ggagcacacc taccctgaaa cagttcgtac ggataatgga cctccttttg cgagcgtaga      4740
     attttcaaac tactgtacca gcaagaacat ccgactcgta cgcaccatcc catactggcc      4800
     ccaaatgaat gggttagtag aacgacagaa ccaggggatt ctgcgcgccc tacgaattgc      4860
     taaatcgatg aaggtagact ggagaaaagc ggttgacgaa tatgtgtatt cttacaatac      4920
     aactccgcat tccgtcactg gcaagtcacc aatggaacta cttaccggaa gaccggtaaa      4980
     agatttattg ccttcgctaa ggactgagcc atactggaaa cgggatgaag caacgcgtga      5040
     taaggacact attaagaaaa tgcaaggaaa attgtatgcg gataaacaac gacacgccaa      5100
     agaatccgat atagttgtcg gagatagcgt catgattaaa aactatgaaa tgggaaaatt      5160
     ggaacctagt ttccgatcgg agaagtatac agtgattcac aaaagcggaa gtgacgtagt      5220
     tgttttgagc gcagacgggg ccaaatatag acgtccagta gctcatttaa aaaagtggcc      5280
     agtctcacat ggtcaagatg gttagtatgg tcattgcgtc ggagcagagt tgatttatat      5340
     atgtgtaaca ctttatttaa aatcgattta ttttcttaat agactttcca cagttaccag      5400
     cctcacccat ctcagatgtc aacagggatt caccacaatc agcagccaag acagattccg      5460
     ataaacgtga gaccatggcg gacacgatga ctgaggaaac caaatcacgg gagaccccac      5520
     ctacaaagcg gcccaagaga tcctcgaaaa tgccagcacg ttatgatact taattataaa      5580
     caatgatttt gttattatca agtttcgtaa atgtaatcag tcaaaccttg gaccagagga      5640
     ggga                                                                   5644
//
ID   Gypsy-462_AA-LTR repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-462_;
KW   Gypsy-462_AA-I; Gypsy-462_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-241
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-241
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3069-3069 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 241 BP; 76 A; 40 C; 59 G; 66 T; 0 other;
     tgtagtatat attataacca ttgtagcacc ccccgtaaga ataatgttag aagagcgaaa        60
     acgacagaga gaaagagaaa cagcttgggt cgtatgaccg ggtatttcct agtataggca       120
     gtggagtgtt aaccttttcc gagatcggat caataaagtg aacgcgtgtt aaagatatct       180
     aaacgtattt aatatctccg gattgtgttc gggaagtgct actgtttggg gcaactctac       240
     a                                                                       241
//
ID   Gypsy-463_AA-I repbase;    DNA;    INV; 9168 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-463_;
KW   Gypsy-463_AA-I; Gypsy-463_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9168
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9168
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3181-3181 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2962..4029
FT                 /product="Gypsy-463_AA-I_1p"
FT                 /translation="MHDDNIPNDQNSVLMTSMSNLSFASLQVPQCKPSNED
FT                 EDIDRKEYEQWKDLLEASMQLAGVSDEYTKMNIFKIKAGAKLLDVLEGTVS
FT                 SIDSPNERTAPYSNAIHRLGTFFGSRDYLFMQRQKLRSLGQRVGEMDSKYV
FT                 KRVIAVAKLCDFDNAILVEQVADAVQAHATNRRVREIARKILRKGGQLAEL
FT                 LDKVRALEMDQKNEEMYAKNHPVPHQVAAVVASTERKERFENRSGDRMYRN
FT                 NERQGVVGSWRGNRGRGFARREYVRSATSQEARCWRCLSSVHSATECWTIN
FT                 QTCHNCQRKGHVARACRRMVSANPMKRRMSIDHKDVGSSKKLAIVKRDEKE
FT                 AVDDVGVSPQSSA"
FT   CDS           join(4479..7043,7043..7732)
FT                 /product="Gypsy-463_AA-I_2p"
FT                 /translation="ETTECISSVSESENLNRNGEVVGKVAGTPITFLIDSG
FT                 ADVNTIGSDTFETLMRESYGELLCIKYGTDKPLKAYASSGKIDVVATFVAE
FT                 LTISQDRPSYMEKFYVINKARALLGRDTAIRYSVLQLGLRVPIQTGQGNFP
FT                 GEISSLNVFEKFPKFNVPPVILRYDDTMPPSRKIFTNIPPAFRAETERRID
FT                 ELLNSGIIERVTDLMDKSYCSSLLVVPKGKNDIRLVVDLRGPNQAIIRTPF
FT                 KMPTLESILSDLPGCKWFSTIDLKSAFFHVVLDETSRHLTNFFAGNAMYRF
FT                 QRLPFGLTNAPDIFQEIMQTIVLAGCKGVRNYLDDILVSGKTKEEHDENLD
FT                 EVLRRLREHNVCINDEKCVFGQQSVKFIGFKLGHDGVRVEDEKLKAIRTFR
FT                 RPETQNEIKSFLGLMNFTERFIPNRADKTMKLRELAKAQHFYWGQEEEAEF
FT                 LYLKEEALKTIAKLGYFSANDDTELYVDASPFGLGAVLAQYNKDGIPRVIA
FT                 CASKALTASEMRYPQTQREALAMVWGIERFTFYLMGKSFVVRTDSEANEFI
FT                 FGKGYKSSKRAVSRAESWALRLQAYDFKVKRIPGPLNVADALSRLISKAQI
FT                 DEPFEEDDDKNLLYSLEVGTMNITWHDIELESENDETLVAVRHAMKSGTWP
FT                 RHLVSYEAQLKDLRVLDPMLFKEDKVVLPLSLHEKAIQEVHKGHIGCPAMK
FT                 RILREYFWWPGMSGDVEKFVRDCNTCVVISKRNPPIPLSSRQLPEGPWEIL
FT                 QVDFLMVSGCGFGEFMVLVDTYSRYLTVVEMRSTDARSTNEALQKVFLTWG
FT                 LPLVIQSDNGPPFQSNEFVQFWERKGVKVIYSCSIYIWGTYMHMYNLTLVI
FT                 IRVRKSIPLSPQTNGAVERQNQGVIKALSAAKVEGKNWRDALQEYVHVHNT
FT                 LKPHARLGITPFELLVGWRHRGTFPALWDPASENTVDRDNVRDMDAMTKLQ
FT                 SKKYADSRRGAKYSNISAGDIVLMAMQKKGKTDPQFSDERFTVLSRDGAKV
FT                 VVRSDRGVQYTRSVNDLKPAPMLSGNIGEQEHTAEGHSVIAADRPDDATDV
FT                 VKKTAARPARNVRKPERFNDMCLYYIFQ"
XX
SQ   Sequence 9168 BP; 2834 A; 1713 C; 2077 G; 2539 T; 5 other;
     atggcatggt cggggatacc aaaaacgctc ccattcggaa gtaagtactg atattttgtt        60
     aagactcggc cacgatataa gaaaaaaaac cattagaaaa tatcaatgga aacaaaatgg       120
     cgattttttt taggtgacca acagagctca atatggagga ctaatttagt gttggattgc       180
     aagcaaaact gaactagaaa taatsatgca atgggaagct tgcatatatt tttaacaacc       240
     aggtgcagat aatgcagatc gactattagc atttttaata ggtgaatatt tgaaggctat       300
     ttgatattgt cttcaaaatg gcgtccataa catatttttc ctacgtgagg ggatatgtgc       360
     tggagatgta atgacaaaat tgacgacaat tcaactaaaa tgtctacgag tacagttttc       420
     aatccaactt attgataatt taactcgtat ccttggttta aggcacaatg gtcgggctcc       480
     atatgaaaaa actggtcaaa actactaaaa tgaatttgaa agtttcagtt tttatttgtt       540
     tttaacatta tawattatat tcttatgatc ctctatagaa atcatactaa aatttaaatt       600
     tcgtcgttga attggctaaa aaataaataa aagatgtgac attgaaataa attgaaattt       660
     taagatatta ggattaaaat aatttcctaa tgctatgcac cagcaccatc tgaaagcttg       720
     tttaatactt ttatggcaca tcaggataaa tgaaaaatat ttaattgaag tttttgtaat       780
     attttgataa tttcaactta aaaacaactt atgttgttct cattttaaat tgtacatact       840
     taaatgcatt tttagatcgc attaaaaatg tctttttcct ttgcgctgaa aattgctctt       900
     cgagaaaaat agtattgtac atattttctg acaaaatatt tcaaaataaa ttcatataaa       960
     tatgtagaca aaccagtcac cggctgaaag tctcgataat agaaataaag taataaatta      1020
     aaaaaaaaat accgtttatc tactcttcat acatttgttg ataaactttc gaatacataa      1080
     gtatgcgact ctaaaagtta tgcaatatat gaacagtccc ttctataaca ctgagcaaca      1140
     ttaagattca acatttttta atagagacga aaaacagttt tggccgaagt tttttttttt      1200
     ttttcgacca ttgtgcaagg taaaccagtg tgactatttg ttatcgaatt atttatagga      1260
     atgtacacgt tccatagtgg acgttcgacc cgcttgggtc taggaaaaat ccattcctcg      1320
     atcggattgg tgcgttccgt agtggacgtt cgacccggtt gggtctagga gaaatccaat      1380
     ccttgatcgg attggtgcgt tccgtagtgg agttcgaccc ggttgggtct aggagaaatc      1440
     caatcctcga tcggattggt gcgttccgta gtgaacgttc gacccggttg ggtctaggag      1500
     aaatccaatc cttgatcgga ttggtgcgtt ccgtagtgga cgttcgaccc ggttgggtct      1560
     agaagaaatc caatccttga tcggattggt gcgttccgta gtggacgttc gacccggttg      1620
     ggtctaggag aaatccaatc ctcgatcgga ttggtgcgtt ccgtagtgga cgttcgaccc      1680
     ggttgggtct aggagaaatc caatccttga tcggattggt gcgttccgta gtggacgttc      1740
     gacccggttg ggttaggaga aatccaatcc ttgatcggat tggtgcgttc cgtagtggac      1800
     gttcgacccg gttgggtcta gaagaaatcc aatccttgat cggattggtg cgttccgtag      1860
     tggacgttcg acccggttgg gtctaggaga aatccaatcc ttgatcggat tggtgcgttc      1920
     cgtagtggac gttcgacccg gttgggtcta ggagaaatcc aatcctcgat cggattggtg      1980
     cgttccgtag tggacgttcg acccggttgg gtctaggaga aatccaatcc ttgatcggat      2040
     tggtgcgttc cgtagtggac gttcgacccg gttgggtcta ggagaaatcc aatccttgat      2100
     cggattggtg cgttccgtag tggacgttcg acccggttgg gtctaggaga aatccaatcc      2160
     tcgatcggat tggtgcgttc cgtagtggac gttcgacccg gttgggtcta ggagaaatcc      2220
     aatccttgat cggattggtg cgttccgtag tgaacgttcg acccggttgg gtctaggaga      2280
     aatccaatcc ttgatcggat tggtgcgttc cgtagtggac gttcgacccg gttgggtcta      2340
     gaagaaatcc aatccttgat cggattggtg cgttccgtag tggacgttcg acccggttgg      2400
     gtctaggaga aatccaatcc tcgatcggat tggtgcgttc cgtagtgaac gttcgacccg      2460
     gttgggtcta ggagaaatcc aatccttgat cggattggtg cgttccgtag tggacgttcg      2520
     acccggttgg gtctaggaga aatccaatcc tcgatcggat tggtgcgttc cgtagtggac      2580
     gttcgacccg gttgggtcta ggagaaatcc aatcctcgat cggattggtg cgttccgtag      2640
     tggamgttcg acmcgattga cttcaagaga aatcccgatt ttgtttaaag gaaattagag      2700
     cctaaaaaaa aaacgtataa gacattgtta cataagacta gaaatgattc aatgcaatag      2760
     taaaataagt cttaactttc tcaatttgac agaaaaacga ccagagcctc gaccaaggat      2820
     gcagcggagt tggcaaaaga acttgagcaa gaaaagaagc ttaacagtac tttgcgatcc      2880
     aaattaagaa aagcccaatc tgtcaacaaa aacttggagc attctttttc agagggcagt      2940
     tttgttcgat tgcattcaac catgcatgac gacaatatac ccaatgacca aaattccgtc      3000
     ctaatgacat cgatgagtaa cctgtcattc gcatctctcc aagttccaca atgtaagccg      3060
     tctaacgagg acgaagacat cgatcgcaaa gagtacgagc aatggaaaga tctgttggag      3120
     gcttctatgc agctagcagg cgtgtcagat gaatatacga agatgaacat attcaaaatc      3180
     aaggctggag caaagctgtt ggacgtcctc gaaggaacgg tgtcaagtat tgattcacca      3240
     aatgaaagga ctgctccata ttcaaacgca atacatcgac ttggcacgtt ttttggttct      3300
     cgagattatt tgttcatgca acgacaaaag ctacgatcac taggacaacg agtgggagaa      3360
     atggactcta aatatgttaa acgagtaatt gctgtggcaa aactatgcga ttttgataat      3420
     gctattttgg tggagcaagt agcagacgca gttcaagcac atgctacaaa tcgtcgagtt      3480
     cgtgagattg ctaggaaaat cctgcgcaaa ggagggcagc tcgctgaact actggataaa      3540
     gttcgtgcat tggagatgga tcagaagaat gaagaaatgt atgcgaagaa tcatccagtt      3600
     ccacaccagg tggcagcagt cgttgcaagt acagaaagga aggaaagatt tgaaaatcgg      3660
     tctggagatc ggatgtaccg aaacaacgaa cgacaaggtg tagttggtag ctggagaggc      3720
     aacagaggca gaggatttgc ccgtcgagag tatgtcagaa gcgctacttc tcaggaagct      3780
     agatgctgga gatgcttgag cagtgtacac agcgctacgg aatgttggac catcaaccaa      3840
     acctgtcata attgccaacg aaagggacac gttgcacgag cttgccgtcg tatggtatca      3900
     gcaaatccca tgaagcggcg catgagcatc gatcacaagg acgtagggtc atcgaaaaag      3960
     ctagctatcg ttaaacgtga cgagaaggaa gcagttgatg atgttggcgt aagtccacaa      4020
     tcttctgcat agctcattgt gtggatgatt tttcgtttaa ttatccaatt attttcgtaa      4080
     atgactgttg aattcacttt gatttgtttt tttttaatac tgaaatgatt cctatatttc      4140
     aaaagacatg ttttgattac ttctattcgt gtttaactaa attcaaataa aaaaaaaaac      4200
     acatgaattc atttaaatgt atgatataga tatgattatt acaaatcaca attctataaa      4260
     ttccaggcca catacaacca gtacaaaatc aaaaaaccgc gaaataatga acacgactgt      4320
     ttctcgaatg agggtgcgac gtcgatcgaa tactcgtatg ataaagacaa aggcgtagtt      4380
     gaaaaaggaa ctgcgtatat ggttagtttc aaaatcacat gctgtaattg cgctttaaaa      4440
     aaaaaaacta tattttctat ttaccacgca tattttagga gacgactgaa tgtatatcaa      4500
     gcgtgagtga gtcagagaat ttgaatagaa atggcgaagt cgtgggcaaa gttgcaggga      4560
     ctccaatcac attcctaatt gattcaggcg cagatgttaa cacgattggc agcgatacat      4620
     tcgaaacatt aatgcgagaa tcatatggtg aactactgtg cataaaatat ggtacagata      4680
     agccacttaa agcatacgca tcttcaggta agattgatgt agtcgctaca ttcgtggcag      4740
     aactgacaat atcccaagat cgacccagct acatggaaaa gttttatgtg atcaacaaag      4800
     cacgtgcgct attaggcagg gatactgcaa ttagatacag tgtactgcaa ttaggtctgc      4860
     gtgttccgat ccaaacagga cagggaaact ttccaggaga gattagttca ctaaacgtat      4920
     tcgaaaagtt tccaaaattt aatgtcccac ctgtcatcct cagatacgat gacactatgc      4980
     cgccgtcgag gaagattttt acaaatatcc ctccggcctt tagagctgag acagaacggc      5040
     gcattgacga actactaaat tcaggaataa ttgaacgcgt tacggactta atggataaat      5100
     catattgctc atcccttttg gtggtgccta agggcaaaaa tgatattcga ctagtggttg      5160
     atctcagggg gcctaatcag gcaattatta gaacaccgtt caagatgccc acattagaat      5220
     ccattctctc cgatttacct ggttgtaaat ggttttcgac gatagacttg aagagtgcct      5280
     ttttccatgt cgttttggac gaaacttcgc gccacctaac aaatttcttc gcgggaaacg      5340
     caatgtacag attccaaaga ctcccatttg gtttgacaaa cgccccagac atatttcagg      5400
     agattatgca gaccatcgtt ctagcagggt gcaaaggagt tcgaaactat cttgatgata      5460
     ttcttgtgtc cggcaagaca aaagaagaac atgacgaaaa cctagacgaa gtgctgcgaa      5520
     ggctccgtga gcataacgtc tgcataaacg acgaaaaatg tgtctttgga cagcagtcag      5580
     tgaaattcat tggattcaaa ttgggtcatg atggagttag agtggaagac gagaaattga      5640
     aggccattcg aacttttcgc agaccggaaa cacagaatga aataaaaagt ttcttgggtt      5700
     taatgaactt tactgaacgc ttcataccta atagagctga caagaccatg aagctaagag      5760
     aattagctaa agcgcaacat ttttactggg gtcaagaaga ggaggcagaa ttcttgtacc      5820
     tgaaagagga agcgctgaaa acaatagcga aacttggata ttttagtgct aatgatgata      5880
     cggaactgta cgtggatgct tctccatttg gattaggcgc agttcttgca caatacaaca      5940
     aggatggtat tcccagagtg atcgcttgtg cgtccaaggc actgacagca tcagaaatgc      6000
     gatatcctca aacacaaaga gaagcccttg cgatggtgtg gggaatagaa cgattcacgt      6060
     tttatctgat gggaaaaagc tttgtggtac gtaccgattc cgaagccaac gagtttattt      6120
     ttggcaaagg atataaatcg agcaaacgag ctgtatcgcg agcagaatcg tgggctttac      6180
     gtctacaagc ttatgatttc aaggttaaac gaatacccgg acctttgaat gtagcggacg      6240
     ccctttcacg actcatatcg aaggcgcaaa tagatgagcc cttcgaagaa gatgatgaca      6300
     aaaatctgct atattctttg gaagtcggca caatgaatat aacatggcat gacattgagc      6360
     tggaatccga gaacgatgaa accttggttg cagtacgtca tgcgatgaag tctggcactt      6420
     ggccaagaca tctggtgagt tacgaggcac agctgaaaga tctacgagtt ttggacccaa      6480
     tgcttttcaa agaggataag gtcgttcttc ctttgagtct tcatgaaaag gccatccaag      6540
     aggtacacaa gggacatata ggatgccctg ctatgaagag gattttaaga gaatactttt      6600
     ggtggccagg gatgagtggt gacgtcgaga agttcgtgag agattgcaac acatgcgtgg      6660
     tgatttccaa aagaaatcca ccaatcccac tctccagccg tcaactacca gaaggaccgt      6720
     gggagatact gcaggttgat tttctgatgg ttagcggttg cggatttgga gagttcatgg      6780
     tattggttga tacatactcg agatacctaa cggttgttga aatgaggtct acggatgcga      6840
     ggagtaccaa tgaagcgctt caaaaggttt ttctcacgtg gggtctaccg cttgtcatcc      6900
     aaagtgacaa tggaccacca ttccagagta atgaatttgt tcaattctgg gaaagaaaag      6960
     gcgtaaaggt aatttacagt tgtagtatat atatatgggg aacatatatg catatgtata      7020
     atttaactct cgttattatt aggtgagaaa gtccatcccc ctgtctccac agacaaacgg      7080
     tgctgtagag cgccaaaatc aaggggtcat caaggcattg tcagcagcca aagtcgaagg      7140
     taaaaactgg cgtgacgcac ttcaggaata cgtacatgtg cataacacgc ttaagccgca      7200
     cgctagactc ggtatcactc cattcgagtt actagtagga tggcggcaca gaggtacatt      7260
     tcctgcactc tgggatcctg catcagaaaa taccgtcgat cgagacaatg tacgagacat      7320
     ggatgcaatg acaaaactac aaagcaaaaa gtatgctgac agtcgtagag gtgcaaaata      7380
     ctcaaatata tctgctggcg acatcgtatt gatggcaatg caaaagaaag gaaaaacaga      7440
     tccacaattt tccgatgaaa gattcaccgt tctatcacga gatggggcta aggtagtggt      7500
     taggagcgat cgcggagttc aatacacgcg tagcgtcaat gaccttaagc ctgctccaat      7560
     gctcagtggt aacatcgggg aacaggaaca tactgcagaa ggccactcag taatcgctgc      7620
     agaccgtcca gacgatgcaa cggatgttgt caagaaaaca gcagcacggc cagctcgaaa      7680
     cgtgcgtaag cccgaaagat ttaacgatat gtgtctctac tatatttttc agtaaaacag      7740
     taagtaaata acatttccgc gtaggtcatg ataaatgaat agcggattat ttcatttttc      7800
     taatacattt tttaaaccgt aagtttaaga aaacaagagt aataaatatg aaagaaaaca      7860
     tgtcagtcca catagtttga tataaaccat tcgacctttt tatagaatat attgaaatag      7920
     aaattattag agatgtgatt gaaagtcact ttcgaaaaaa aataacatag aawatggtgt      7980
     tcataaaaaa aaactgttaa cctaagatag gagaagaatc tagtattaaa ataagaaatt      8040
     cagcagtcag cacttcggcg aactttttgt tggtgatatt tcattactct tatgaacttc      8100
     ggttcatact tactaccaag gctggttcat tacactgtgt ccagctgaac ccgccttgct      8160
     tactgcaacc ctaaaatctc ctcgacgtcc catggatggc agcacaactg gatcccaacc      8220
     gcccacgcat aacgaagcct gattggttgc gggagactgg ttgttttatg cggatgatta      8280
     tttgcacgga tcttaaattg tcctctgggt ttcgtctttc tggtagttac ggagtctact      8340
     agctctcggt tgactttatt ctccgcggat tttcggagat aacttggttt tccttctttt      8400
     ataccggtat accgcttgaa aatgatgaaa actgtatcac gatgatcccg acacgtagaa      8460
     aaaatcaatc caaaatccta ctacgcatgc tataatactc caaaatccta ctataatatg      8520
     cataatacgg gtgagatatg tcaaatgaaa ggcctttttt gataatgggt ggtgggcggc      8580
     ggcggcgagc aataagcgcc gccgaatact taaggtcaca catgtcagaa tccaaacatg      8640
     gcctctgcag aaatactgaa cgtatgaaca cagatattat ctgcggtatg aacgaagttg      8700
     atatttttat ttttagttct agcgcacaaa gctaaaatag gaattaattt aaatatcgtt      8760
     taattatttt gtctttggtt caatctgcca tgtgttttca acgttttggt atacatcatt      8820
     gaatttggat ttcaagctgt tttatggatt tccatagctg ttaaattggg catttttctg      8880
     ctataatggc ttatatgatt atgtcagaat taataatgaa tgagccctac atgaaacttc      8940
     ttgtgtaatg aaatagatat cgaaaaatat caacaaatca attattgttc attttatccc      9000
     acctaagcac cgctctatgg gctgattatt atcatattgt gctatcagca tgctgaatac      9060
     gtttatcaaa tacataagat gtaacacaac caattaaaaa taacttgtct gtttgctaca      9120
     ctgttatgat gaagtattac acatttaaag agtagaaaag gaggtgga                   9168
//
ID   Gypsy-463_AA-LTR repbase;    DNA;    INV; 463 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-463_;
KW   Gypsy-463_AA-I; Gypsy-463_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-463
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-463
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3070-3070 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 463 BP; 165 A; 47 C; 119 G; 132 T; 0 other;
     tgtaggtatc gggtgtagat tattatgtta ttatgcgact gaatgaaatg attagtacga        60
     atgaattaac gagatttagg tgtatgaaat tagaataatt attcatattt aacaataata       120
     aaatttgatg agacaaactt taatgattca ttttgaataa gcgtgttgaa taggagaata       180
     taaacaaacc atgcgaaagc gcagtacctg cggagtctct aaagttttgg aaaaaaggaa       240
     acaaaagaga acgagactaa aagcttgctc gagtggaaga aaaagcttgt acgatgtgaa       300
     aagtggaagg ggtgttgaag aagagaaaag gatcagtttt gagactaatg tgattgagac       360
     cagttcggtg cgcttttggt tttggtttga gtgagtgatt atttggagat tccgtgaagt       420
     tccgtgaagg ctaggcggaa gtgtaaaatg gacaaatcct aca                         463
//
ID   Gypsy-464_AA-I repbase;    DNA;    INV; 2457 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-464_;
KW   Gypsy-464_AA-I; Gypsy-464_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2457
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2457
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3039-3039 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 2457 BP; 761 A; 462 C; 589 G; 636 T; 9 other;
     atggcgcagt cggtaggata tgacttatcg aacgcttttt tccatatcca attggacaag        60
     gattcccgcc atttgactaa ttttttcaca gagtttggca tgtacagata tgttcgatta       120
     cccttcggac tttgcaatgc gccagatata ttccaggaaa cttwacakag gcaaatacta       180
     ggaggctgtg aaggggtgaa aaactatctg gatgacattt tagtctttgg atccacaaaa       240
     gacgagcatg atgccaatct ggaagctgtt ctgacccgcc tgcgagagca taatgtaaag       300
     ctcaatgatt cgaagtgtgt tttcggtagt gaatccgtga aattcgttgg ctttattttg       360
     actagcgatg gatggaaaat ggaggaggaa aaaatcagtg cggttaaaaa ttttcggcgc       420
     ccggcaagct gttcagaagt gaagagtttt cttgggctgg tgacatttgc cgataaattt       480
     attctgaatc gagcagataa aacggagcga cttcgacgtc tagccaacgc agacaaattt       540
     tactggacac aagacgagga tgatgagttc aactacctaa gatgtgaagc actgaagaca       600
     atcggaaagc tgggttatta caatgctgcg gataggaccg agctcttcgt tgatgcatca       660
     cctatcggat tgggggcagt gttagtgcag tatgatgaat ccggaatgcc tcgcataata       720
     gcatgtgcat ccaaagccct tactacgacg gaacaaaaat atccacattc gcacaaggaa       780
     gcgctagcag tagtctgggg cgtagaaagg ttttcgtttt atctgctaag tagatcattc       840
     gtcattcgaa ctgacgcgga ggctaatgaa tacatattca actctaatca tcgactgggt       900
     aaacgagccg tctctcgagc agaagcgtgg gcacttagat tacaaccgta tgattttgtg       960
     atgaagagag ttccaggtga aaagaatgtg gccgatgctt tatcacggtt gatccaggaa      1020
     acgcaaaacg cgttaccatt tgaggaagat gataacaatc actatctgtt tgcccttgat      1080
     gttggatgta tggacatcac ctgggaagaa atagaacgaa aatcagagag cgacgaagaa      1140
     ctacaacagc ttcgtggagc tatatcatgt caacattggc ccaacggact gcgcagattc      1200
     gaatcacaaa aggatagtct tcatgtactt ggatctctcg tcttcaaaga tgacaaatcg      1260
     atattaccaa gtgaactacg attgaaagcg atgcaattgg cacacagtgg acatgtggga      1320
     gaaacggcaa tgaaaagagt aatgcgtgaa tttttctggt ggccaggaat ggcaactgat      1380
     gtkgtcaaat ttgttaagca atgtgagact tgtgccatgt tatcgcgcaa aaatccccca      1440
     attccgcttt catgtagaga gttgccagag ggaccatggg agatcattca gatcgacttt      1500
     ctctcaattc ccacatttgg tactggmcat tttctgatcg tagtcgatac atactcacgc      1560
     tatctatcgg ttgttcagat gaaacaaaca gatgctgaca awaccaatgc cgccctttgt      1620
     gaggtgttca aaacctgggg atgtccaaaa attatccaaa gcgataatgg ttctcccttt      1680
     cagagcgccg cgtttgtgca cttctgggaa gaaaaaggak tacgggttcg aaagtctatc      1740
     cctctttgcc ctcaaacaaa cggactagtg gagaggcaaa atcagggttt aataaaagca      1800
     gtagctggat ccaaactaga tggagtaaac tggaaagtag ctcttcagcg ttatgtacac      1860
     catcacaata cattaattcc ccattcacgg ctactagtta ctccttttga attaatgaca      1920
     gggtggaagt tccgtggaac attcccaagc ctttggagtg gctctaacaa caaggtggac      1980
     agagctgaaa taagagagcg tgatgccgaa tcgaagttaa taaataagaa atatgcagat      2040
     tcggcwcgta tggcaaaaga ctcwaatatc atggttggtg ataaagtttt gatactgcaa      2100
     cagaaacgta acaaagtaga tcctaacttt tcggcagaac aatacacggt tgtttcaaga      2160
     gatgggccaa aagtagttgt ggttaacaaw aatggagtgc aatatacccg aagtataaac      2220
     gacgtgaaac aagctccaga aaaattgttc gattctggta atcaaggagg agctcatgga      2280
     aatagtgttg gtgaaggagg acatgatcat aacaatgata atttttctaa cattcgggat      2340
     gagggtagtg tttcggtcac aagaactctt cgaccgaaaa atgtgattag aaaacctgca      2400
     aagtttgacg acaaattttt gtatcatgtt tattgttaga atagacaagg agggtgt         2457
//
ID   Gypsy-464_AA-LTR repbase;    DNA;    INV; 447 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-464_;
KW   Gypsy-464_AA-I; Gypsy-464_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-447
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-447
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3071-3071 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 447 BP; 158 A; 76 C; 88 G; 125 T; 0 other;
     tgtagtaccc atatgcagaa caataaatgt ttaaactaaa ttaaataaaa aaatctataa        60
     ttaagaacgc cataaatact ggactaataa atggttggat caaataaaat gaactataaa       120
     atatattatt gaaccagttt tgaaattatt gaattgtttg gcagtttacc tacattgtgt       180
     ttattgtgta tcgattgctt tacgataagt ccaaccctgt gttggtagcg aacgacagca       240
     gtcttgatgc agcgacgtta aaagcttttg aaatgaacga agactgcgaa agcttccaac       300
     cgcttcgcgg aacgaaggaa aaaacgatca ttcactagcg taaattcggg cagtaaagtt       360
     gtgcgcgtat cttctggaga gtttcgtccg aaaacaaaat ggagtctcat aattccggag       420
     accatccgga ttccgaagat tacgaca                                           447
//
ID   Gypsy-465_AA-I repbase;    DNA;    INV; 4965 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-465_;
KW   Gypsy-465_AA-I; Gypsy-465_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4965
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4965
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4965 BP; 1528 A; 906 C; 1177 G; 1354 T; 0 other;
     attggcgacg aaaggatttc aaacctacga agttattttg gatggatatg gcccaccaag        60
     attttcgttt ggagaccagt gggagatgta tcaggagcgg ttggaacagt attttctggc       120
     tgcggacgta gatgaggagc gtatatccgc tgtatttctg acgtcaattt ctctagaagt       180
     ctatcaaacc gtgaagatta tctgccatcc ttcaaaaccg aatgagaaga agtacgatga       240
     gctgtgtgca cttttgaagg gatgattttg tccgacgatg gtcacttacc gggaacgagc       300
     gattttctac agggctcgac aggaatcagg agaaagtgtt caagaatggt acgtccgttt       360
     gaagaagtta tctctgaatt gtgaatttgg agaacatttg gaccatgcgc tgaaggatat       420
     attcgtgacg ggtcttcaac caggtccgat tttcgaacgt ttgtgtgaag aagaggacac       480
     cgttgcacta gaggacttgc tcaagcttgc ggcgaaacga gaagcaacct tgaaaaacag       540
     agtatttctt gaagtaaaca agattagcga aaggaaggca attatggggc gaagtctgcg       600
     aagaaaccaa gttcagctgt ttgctatgcg tgtggtaaga acaatcacga ttttcaaagc       660
     tgccagtacc ggagttatgt ctgcaagatt tgcaaggaaa aaggtcacat tgccgtggtc       720
     tgtccgaaaa agccgaagga aaactctgga agaaaggaaa acaaagtcaa tcatttggag       780
     gtgaacagca ttggctgctc tgacccatat ttcgtgaacg ttgcggttaa tggacgtatg       840
     acgaagtttg aaatggatac aggatcaccg attacaatag tttcagaagc gttttatcaa       900
     atccagtttg gagaatttcc gttacatccg ttccgtggta agctggtgtt ttataccggt       960
     ggtgaggcta caccgaaagg agcatttgaa gctgttctag tgtatcacgg tcgacaagct      1020
     gtaggtcaaa ttgttgtcat tgaaggagga cgcaacccat tgataggacg agattttatt      1080
     ggggagttgc tgaatttgcg aatcaacaag ttggatacgg agtcatcaga gaagcatgaa      1140
     aaagagctga aggatgtttt agatcgttac ggagaattgt tcgatggatc gttgggccgt      1200
     tacaagtatt cgaaggtcaa cttgcaattg aagccgaatg ctgagccgaa gtttttcaag      1260
     ccaaggaaaa taccaatttc gttccaatcc aaggtggagg aagaattgga aaatctggag      1320
     aagacaggca ttatttcgaa ggcagaagcc gctgactggg gaacaccttt ggttccagtt      1380
     ttgaagaaag ataagtcaat tcgtctatac gctaattagg gtgatgtgct agtgtccatc      1440
     gtattaagca ttgatcagtg agaactgcaa ttttcccagt attgcagtga atgatgctga      1500
     tacaaaccga tgccaaacaa ttctttctca aaacggcttt agcattgtac aataacattt      1560
     tgataaatct tgatctattt ttgtaaatta tgcaaacaaa atgcatctta ccgtattctc      1620
     aatccgtcgt atcattttca actccgtcgc aatcagtttc cagattcgtc tcacatctta      1680
     cggctcactg tgtgtattga gtggttaaaa cacaacatat caacgctata ataaaatgtt      1740
     ttactagaat atatagatct acgggtatct ccccattcct tcagcatgat agtactaata      1800
     ctaatttcct ttaaaattaa ttgttcgtca tcaaaattca gcccaaacat atgaacacaa      1860
     ttccttttga ccgtacaatt atggcatttg ctcacagtac agcgaaaaca acacaatcaa      1920
     aggaatcgta tttttacgtc gagcgcagcg cacacattga tgcaaacaag cttttttttc      1980
     tcagtacgac ggattgaact ttgtttacat tctcaattat acgcggcggt tgaggaaatt      2040
     tcgtgaaaat ttggtgattt attgaatttt tacggcgtgt ggttggaatg aaatccttca      2100
     gtgaagaagt acgaaggttt tccatagtga aaataagtgc ccggcgaagt aagtcaccca      2160
     cggggggcgg aaagaaactt gcgttggaaa gtggtgtggc tcagtcgatc gctaagcatt      2220
     tctctcaaat cgtgttcgtc catgcgattt cggtgaaaaa gtgcaaagtg gataattgaa      2280
     ctgaagttat ttaccgaaat acagtagttt tattgcattt ttggtgtaca agtgtacaaa      2340
     ccagaacagc tttcacaaaa ttacacttgg ataatggatc catgttgcag gtaagtttta      2400
     atatccaccg tggtggaaca tttaaagttt gatacgacga attgtagcgc ttacgacgaa      2460
     gtagaacaaa accctaccgg gtaaccgtga atccgtttct tgaagacaag cggtacccaa      2520
     tgccggttgt agaggatttg tttgacgcgc tgcaaggagg taaactgttt tcgaagttgg      2580
     atttgaagtc agcatataat caacttgagc tggaagatga gtccaggaga atgttagcat      2640
     ggagcactca caaaggtatt tatcatgtaa accgattgcc atttggaaca aaaccagcct      2700
     gtgcaatttt tcaagaggtt ctagagaagc tactacaaga ttgtccagga tgcgccaatt      2760
     tcctccatga tgttttggta accggtgcaa cagttagtga gcatataagt aacttatcaa      2820
     gagtcttgga gaagcttttg caagtaggat tccgcctgaa tagagaaaaa tgcgagtttt      2880
     tgaagaccaa aatgcagttt ttgggacaca tcgtggatgg tgatggacta cataatgatc      2940
     cagagaaggt tcgagctatt atggatattc gaagaccgga aaatgtgaaa gcgctacgag      3000
     agttcctcgg gatggtaacg tattacgcca agttcattcc gaatatttca acaatattga      3060
     gtccgttgta ccgaatgctg aagaaagacg aacgatacaa ttggtcagct gaatgcgatg      3120
     cggctttcga aaccatcaag cagatgttgt attccgacaa agttttaact ccgtacaatc      3180
     cagaattgtc tgttgtgtta attactgatg cttcgggcaa aggcgtcgga gctgtactct      3240
     tgcaagtatt cccagatgga agtcagcggc cagtaacatt catttcgaga gtgctgaaga      3300
     atcatgtgca agaatattca cctttggaca tggaagcgct ggctggaaga ttgagtggct      3360
     acttacttgg aagaacattt acaattttga cggaccatga acctctgatg tcgatatttg      3420
     gacgaaaagg aattccagat atggtgtttg gcaagctaca acgttgggct gtattcctgg      3480
     ctaattatga atatgaaatc aagtacatca aaggagtaag caacaaggta gcagattttt      3540
     tgtcacgatc accagttcaa tgtagtgaag acgacgttgg agatgacgaa gaagtaatgt      3600
     ttctacaata tttggaatcc gagacaagat cgttagtgga acgaaagcag ctcattatgg      3660
     aatttcgacg cgatcctgtt gttagccgaa tagtgaactt cgtgaagacc ggatggccaa      3720
     gcaacatgaa tgaccaggaa ctttagaagt tttatgttcg gaaagatgag ctgacggttg      3780
     aagaagaagt gcttttgtgg gactatcgca ttgtggcgcc ggccaagctt cgtccatttt      3840
     tgctgcaaga actacattca tcgcatcttg gaatagtcaa aatgaagtct ctggcccgca      3900
     attacctttg gtggcccaat attgacaaag acattgaaga cattggcaag cgttgtgaaa      3960
     tttgtatcca gcgtagaccg gaagcaggta atacccagat ttctccatgg aagtaaagtt      4020
     caaggccatt tgagaggata catattgatc acttattcct gaaagagaag aacttcctca      4080
     taataacgga cagctcttca aaatgggtgg agtgctactt ggttcgttcg cttactacca      4140
     aagaaaccat cgaaaagctg gaggattgtt tttcacgttt tgaaaactgc gatgttcttg      4200
     tatccgacaa cggaagatcg ttcacggcaa acgagtttca agcattttgt caggaaagag      4260
     gtattcgtca tttaacatca gcacccttta gtccctgctc aaacggtgct gcggagaatg      4320
     cagtcaaaac gttaaaaaat gctttgaaga aaatgttagc agattccggc aaccgtggta      4380
     agtctttggc aacactaatg aatcatcacc tacaaattta tagggctaca ccgcattgta      4440
     ccacgaatga gactcctttc aagttaatgt ttggacggga aatgaaaacc acatgtgacg      4500
     ttctaagaaa gcaaaccaac gttcaacatt tcgagaaaac ttagaaactc aatattggaa      4560
     agaaggacaa caattttgcg gttggtgaga tggtatatgc gagggattat cgagaccctg      4620
     atcgacaacg atggataaaa gccaagattg ttagaagaaa atgcgaaaac atatatgaat      4680
     gccatgctac cgtctgccga tttgggaatg attgttagaa gatcacatca aattatgaag      4740
     tacgcatatg acgattacga agatgaaggt gctcgtggag gtgacattga aacaattgtt      4800
     gctgttcctg atgatgagta tctatcctat aacccaattc catctataac ccaattccac      4860
     aaccagatca acaacaacca ggtcgcagtc gtgaaaatgg agtatatgtc actagaagca      4920
     atcgggtggt gcgaattcca gaccgctact agcttacggg ggaga                      4965
//
ID   Gypsy-465_AA-LTR repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-465_;
KW   Gypsy-465_AA-I; Gypsy-465_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-152
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-152
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3072-3072 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 152 BP; 46 A; 36 C; 24 G; 46 T; 0 other;
     tgtgctgtag cacgtttgat ccaggcagcc ttagcggcca catagcaacg accattgatt        60
     agttacccac cttattgatt caataaaaca ttcattctgt attttcccat caaacgaacc       120
     agacgtattt ttaattagtt cgatacagaa ca                                     152
//
ID   Gypsy-466_AA-I repbase;    DNA;    INV; 3974 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-466_;
KW   Gypsy-466_AA-I; Gypsy-466_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3974
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3974
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3974 BP; 1112 A; 965 C; 892 G; 1005 T; 0 other;
     attggtgacc ccggacgcgc gtagttccgt agtacgtgga gatcaaacag ttcgcggcct        60
     gctttcaagc caattccgaa aattcagcag aataatcgaa aggctttaca taaccccaaa       120
     catgcctgat gaattggaag acgcagcggc gactgctact gcaactgctg ctgttaccgt       180
     caagttacct gacttttgga aaaacgatcc aaatatgtgg tttgcccagg ctgaagccca       240
     attcaacctg gcgcagatta ccaaggacga aaccaagttc tggcatataa tcgccaaaat       300
     cgaccaaagc gtaatttgcc atgtgtcgga tctcgtctct aatccgccgg cggccgataa       360
     atacaaggcg gtcaaggacc gattgattgc acgtttcgct ttgtctccac aagcgcggct       420
     agagcagctt ctaagctctt gtgatttagg tgattttcgt ccaactcact tgcttgctcg       480
     gatgaatgaa gtcgcaaccg gattgaatgt tgatgataac ctcatgaaaa tgctcttcct       540
     gcagcgaatg ccagctaacg tgagaacagt attggccatc agcgacggca ctttgccaaa       600
     actagctgaa atggctgaca aaatgattga ctgctccaac agcaacgttt ccgccgtcac       660
     tgtgccgtca agggatcaag tagccgcaaa tgccgttgca acaacatttt ctacgagccc       720
     acaaccagct gagctggcct ctttaaggga agaaatagaa gtgctgacgg ctgaagtacg       780
     tcgattgaag agtggaccaa acaaacctcg cagccgatcc ctctccagat cccgaacagc       840
     aaatgactca atttgttggt atcatcgtaa atacggtgta agagcagagc attgtcgtga       900
     accttgctca tacagtcata caaaaaacta agttttcacc ccctagagtc ggcgcaggtg       960
     ggtgacggat ttgaaagccg ccgtttgact atactcgata gtacgactcg gcacaagttt      1020
     ctcgtggaca ctggttcgga cgtatctata atacctgcca caaaagccga taaacgcaga      1080
     ggtgctacac cgttttcgct gcacgccgca aacggcacga aaatcaacac cttcggcaac      1140
     aaattcctct ctgtgaatct tggcttacga cgacgtttta cctggcgatt tttagtagca      1200
     gatgttagca gcgcgatcat cggcgcagat atgttggcgc attttggatt gctcgtggac      1260
     ctcggccgtc gtcagctgat cgatggtatc acccgtcatc gaagtactgg atgtttgaaa      1320
     actactacca tacatggcat aacaataatc aacgctgatc atcctttcca tggaatacta      1380
     tctgcttatc gtgaaattct cgttccacaa ttagcgcatc gagaaatttt gcacgatgtc      1440
     actcatcaca tcgtcacgca cggaccacca gtggcatgta aggctcgccg aatgcacccg      1500
     gaaaaattga aagcagcgaa agaagaattc aagattatgt gcgatatagg aatttgcagg      1560
     ccatcgagca gcagctgggc gagcgcatta cactgcgttc ctaaaaaaaa tggcgaatgg      1620
     aggtttgttg gcgactaccg gcgtctgaac aaagtaacag ttccagaccg gtaccccgtt      1680
     cctcacgtgc acgatcttct taatcgtttc gaaggtaaga gcatattcac caccttagat      1740
     cttgtacggg cctactataa tatcccagtg gaatcggctg atataccaaa aactgccgtt      1800
     attacacctt ttggattatt cgaatttacc cgtatgccct tcggcctctg caacgcaagc      1860
     caaacgttcc aaaggttcat gaataagttg ttcgccgatc ttgattttgt cattgtcttt      1920
     attgacgata tctgcatcgc ttcttcaaac gaaactgagc acaaagagca cgtaaaaatt      1980
     gtcctagatc gtctgaagga aaatggcctg actataaacg ccgagaaatg caaatttttc      2040
     cttgccgaag ttgaattcct cggttacgtt gtaggcaagg aaggagttcg accgcttcct      2100
     gctcgagttc aagcggtgtt ggaataccaa cctccaaaaa ccgtgaaaga tttgcgacgt      2160
     ttccttgctt tattaaacgt ctataaacgt ttcgttccgc atgctgttga aattcaacaa      2220
     gaactaagga agctaattcc cgataatcga aagaacgatt ccagaccaat tccctgggat      2280
     aaccacgctg cacgctgttt cgaagactgt aagagatcgt tggcagatgc cacgttgctg      2340
     cactatccaa gtgcatcaaa gcccctcggc ctcatggtgg atgcctccaa ctttgcggca      2400
     ggagcggttc tgcagcaact tgaaaatgga atctggaaac cgttagggtt cttttccgaa      2460
     aagttttccc caagtcaaca gaagtattcc acttttggtc gggaacttac ggcaacaaaa      2520
     ctcgcggtta agtattttag acacctggta gagggacgcc agtttacgat tttcaccgat      2580
     cattttcctc tgacgtatgc tatgacaaca gatccaagca gccgtctccc tcacgaagag      2640
     agatacttgc agtatgtggc agaatttacc acagatatac gccatatcag tagtaaggac      2700
     aacatcgttg ctgatgccat gtcaagagtc aatgcaatcg tcgcaaaatt tgacttcaat      2760
     tcgattgcaa atgatcaagc agctgataat cagttgcagg atttgttgaa atccaacaaa      2820
     acgtccctta acctccagca gcgtcggttt ccgtctttgt cttcaccgat atattgtgat      2880
     gtgtccaaca ataattgcat tcgaccttat cttccagaaa aacatcgtgt gccagtaatg      2940
     agtcagctac atggtctagc gcaccctgga ataagaacca ctaggaaact catcgctgat      3000
     cgatttgttt ggccatcgat gaacaaagat attgcgaagt tcgtcagaat gtgtcagcaa      3060
     tgccaaaggt cgaaaatatt tcgacatacc gtcgcaccgc tttcaagttt cgaaaagcca      3120
     aaggctagat ttcggcatgt tcatattgat ttggtggggc ctctaccgcc atcgaaaggg      3180
     tatcggtatc tgctaacaat ggtcgaccga ttttctcgct ggccagaggc aataccgctc      3240
     caggacataa ctgcgccaac ggtagcaatg accatataca ccgaatggat ttctcgatat      3300
     ggcacacccg aaacaatcac tactgaccaa ggccgtcagt ttgagtcgga aattttccag      3360
     gagctaacgc accttctcgg agtacatcac attcacacca ccgcttacca tccacagtca      3420
     aacggaatgg tggagcgttt tcaccggacc atgaaagctg cattgatgtg taccaatccg      3480
     aagaattggc acgatcggct ccctttagtg ctgcttggat taaggtctgc atttcgtgaa      3540
     gattctaaat gctcggcagc ggacctcgtg tttggtcaac gattcagctg ccccgaatgt      3600
     tgaccgcacg gaatttgcaa aagcattaca tcagatgttt tcgggtttga aggcttcaga      3660
     aggcacacgt cactccaagt tgcgagtttt catgaatccg agattgaaag attgcagtca      3720
     cgtgttcgtc agaattgatg ctgttaggcg accactacaa ccaccatacg agggacccta      3780
     cgaagtggtg aaacgaagcg ataaatattt cgaaatcaat gtgctcggaa agaatcaaat      3840
     agtctccatt gatcgagtaa agcctgcttt catttgtgat cagaatttat caagttaccc      3900
     ccaagatgat catcacacag taattactcc tgcaggacac cgtgttcgat ttatggtgta      3960
     actggggggg cgta                                                        3974
//
ID   Gypsy-466_AA-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-466_;
KW   Gypsy-466_AA-I; Gypsy-466_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-166
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-166
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3073-3073 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 166 BP; 51 A; 40 C; 33 G; 42 T; 0 other;
     tgtggtggta ccctttggag ccaccctatg cgcaatcaga atttgcgaac aaccctatgt        60
     agaataagac agttaaatac aagacgcaac cgtgtaaaca cgttcgagaa aataaagagt       120
     tttatttcca agtatccgtc gcggttttca ttcgaccgtc cccaca                      166
//
ID   Gypsy-467_AA-I repbase;    DNA;    INV; 3904 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-467_;
KW   Gypsy-467_AA-I; Gypsy-467_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3904
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3904
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3904 BP; 1083 A; 925 C; 908 G; 988 T; 0 other;
     ttggtgaccc cgacgaacga gtgttgttta cggtagtcga ttcgcagttc ggttcggttt        60
     tccgcggaag tgtttcgtca acatgatgga aggagcaaac gacgccattt tgggtgatca       120
     acaagtcgac cggattgccg ccagctgtga aactgccaga tttctggaag aacgatccag       180
     atatgtggtt cgcgcaaact gaagcgcagt ttgcgttggc aaacgtaacg aaagatgaaa       240
     cccggtttta tcatatcgtt gctaaaatag accaaaccgt gatctgccac atcgcggatt       300
     tggtaacgaa tcccccagcg gcggacaagt acaaagcggt gaaagaaaga ttgatttcac       360
     ggtttgctct ttcttcgcaa gcgaaattgg agagattact cggatcacac gatttgggag       420
     acctccgccc cacgcattta cttgcaaaaa tgcaggagtt gtcggctggg ctagcggtag       480
     atgaaaattt gttgaagatg tttttcctcc agcgtctacc gacgcatatt agaggaatcc       540
     tttccattag tgacggaacc atcacgaagt tggcagaatt ggccgaccga taacagtccg       600
     gcaaacatcg ccagtgtcaa ccagcccgtc gacactatcg acgaattgaa aacccaaatt       660
     gcggccctta cggctgaaat caagcgtatg aaagtgcagc cgccgcgcca acgtagtcga       720
     tccgtctcga gatcatcgtc aagagcttca agtggaggag tttgctggta ccaccggcaa       780
     tatggaagca acgcccacca gtgccgagaa ccttgtacgt tttctccaaa aaactagtgc       840
     acaacccacc tcatacggca gaggtgggtt gcctaccggc gagccgtcgt ttagttatct       900
     tcgacaagtc ttcccagaaa cgttccctga tcgactctgg atctgacgtc tccattgtcc       960
     cagcgagtaa aagtgatcgg tggactggcg aaatccctct tatattacac gcagcaaacg      1020
     gctcaagcat aaaaacctat ggacgaaaat ggtactccgt ggatttaggt cttcgtcgaa      1080
     aatacacatg gagtttcata gtggcggatg ttagcatggc tattctcggt gccgatttcc      1140
     tggcaagtca cggcttgatg attgatttga aaaacagatc gttgatagat agtctaacac      1200
     gactgcattc aagtggtaat gtgatggctg ctgaggttca cggggtgaca tcggtcgaag      1260
     acaatcgccc gttccgcgac ctcctccttg aatttcgcga gatcaccgtg ccttcttcct      1320
     tgcaacattc ccggattacg cacagtgtga cccatcacat tgtaacaaga ggaccacccg      1380
     tagccagtaa agttaggagg atgcatccgg acaaagtgcg agcagcgaaa gaggaatttc      1440
     aaacaatgat cgactttgga atttgcaggt cgtctgatag ttcctgggca agcccccttc      1500
     actgcgtgcc aaaaaagaat agtcagtttc gtttcgtcgg cgactaccgg cagctcaaca      1560
     aggctacatc tcctgatcgc tacccagtgc cacacataca cgatctgcta cattcgttga      1620
     atggtaagtc catatttaca acgttatact tagagagagc ttaccatcag attcccgttg      1680
     aggagtccga tattccgaaa actgcagtaa taactccttt tggattattc gagtttactc      1740
     gaatgcagtt tggtttgacc aatgctagtc aaacatttca acgatttatg gacaaattat      1800
     ttgcagatct cgattttgtg gtggtattta tcgacgacat ctgcatagct tcatcgtcga      1860
     ttgaggagca ccgcctacac gttcgaacag tgctgcaacg actgaaagca aatgggttag      1920
     tattgaacgt gtcgaaaagc aagttcgccc aaactgaggt tgaatttctg ggctacgtag      1980
     tcaacaaaga tggtatccgc ccacttcccg agcgtgttaa agcggtccag gatttcggtc      2040
     gtccgaccac tgtgcgtgaa ctccgaagat ttcttgccct aattaacgta tataagcgat      2100
     ttatccccca cgcatcaaat atccaagggg acctgtgggc gttaattccg ggtaatcgga      2160
     aaaacgatac gaggaaaatt caatggacag accacactat ccaatgtttt gaaaattgta      2220
     agcattcact ttcggaaaca gctcttctgt catatccaga ttccggaaaa agacttggac      2280
     taatgattga tgcatctaac acggccgctg gagccgtatt acaacagcta gaagggacgt      2340
     cgtggaagcc actaggtttc tactcagaga aattcaacga tgcccaaagg aaatattcta      2400
     cctttggcag ggaattaacg gcgatgaaga tggccgtcca atacttccga catttcttgg      2460
     aggggcgtgc cttcacgata tttaccgatc accggccgct aacgcattca ttatcctcaa      2520
     cctcgaatgc tcgactacca cacgaagaac gatatttacg gtttatatcc gaatttacaa      2580
     ccgatataca gcacatcagt ggaaaggaca atactgtagc ggatgcactt tcccggatcg      2640
     atgccgtttc ccacacggtt gtcaatttcg acgaattcgc aaaggatcag gagagcgaca      2700
     ttgaattgaa gcagttgctg aaatcaacgt ctacttcgat gaaactacag aaaataaatc      2760
     tgcaacattg ccgaacacct gtatattgcg acacttcgat ttcgaatcaa gtacgaccgt      2820
     acgtccccct gaaacatcgg cacactgtta tggaaaagct acatggtctg tcccatccag      2880
     gcgtgcgctc aacgaagaaa ctgatttctg atcggtttgt ttggccgtcc atgaagaaag      2940
     acattggtaa gtttgttaag acctgcttag attgtcagcg ttcaaaggtg tcacgccata      3000
     cagtttcccc gcttggcagt tttgatattc caaaatcacg attccgccac attcatatag      3060
     acctagtggg tccactacca ccatctaatg gttgccgtta tctgttaact atgattgatc      3120
     gatttactcg gtggccagaa gcagttcccc tggagaatat gacttcaaat tctgtggcgg      3180
     aggctctttg tggatttcta gatttggaac acccgagtcg attacaagtg atcaaggcag      3240
     gcaattcgaa tcggagcttt tcgctgaatt gaatcggatt ttgggaacta atcacattcg      3300
     taccactgca tatcacccgg aggcaaatgg tatggtagag cgattccacc gcacgttaaa      3360
     agcagcaatc atgacaacga actctaaaca ttggcatcaa aaccttccgt taattcttct      3420
     gggtttgcga gtagcttaca gagaagattt aaaatgcagt tcagcagagt tagtgtatgg      3480
     ccaaaacctc aggattccag gagaattttt cgacgaagct cgtcccgacg ctaatcgaac      3540
     ggagtttgct cagcaactac agcgatcgtt tcttcagatc aaagcccctg cggcatcgaa      3600
     ccatggaaag cggagcgtat tcgttagtag tgacttgaag tcttgctcac acgtgtttgt      3660
     tagaatcgat tatgttaaga aacccttgca acatccatac gaaggcccat tcgaggtctt      3720
     gaaacgacaa gataaatttt ttgacttgct gattgctggt aaacgccaac ggatctctgt      3780
     tgaccggcta aaaccagcct tcatgtgcag tccagagatc atcgagcacc ttcctgatga      3840
     caacaaagtt aaagtaacac catcaggaca acgcgtacga ttcctggtgt aattcggggg      3900
     aggc                                                                   3904
//
ID   Gypsy-467_AA-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-467_;
KW   Gypsy-467_AA-I; Gypsy-467_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3074-3074 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 185 BP; 67 A; 36 C; 41 G; 41 T; 0 other;
     tgtggggagc acaaccctgt gcatccgtgg agagttggag agtaagaaat aaacgagtac        60
     gaaggcaagt cgtaaattca accgcgaaca gaacagccgc aaataaaatt gttattgcaa       120
     aagaagaata aaagtttcag ttaattaact ccgcgaacat ttatttcgat ttccgatccg       180
     ccaca                                                                   185
//
ID   Gypsy-468_AA-I repbase;    DNA;    INV; 6588 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-468_;
KW   Gypsy-468_AA-I; Gypsy-468_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6588
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6588
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6588 BP; 2666 A; 1183 C; 1167 G; 1572 T; 0 other;
     tggcgaccaa atgacagttc cgaaaacctg tcaacgggaa aaaccgcgta atgaaaaatg        60
     tgctggaaaa ccgtgtaagg aaaaatgtgc tagctatttg actgtgaaaa gtgatagtca       120
     gagtaatatg aacctcgaaa tcgcatgaag aaaaatgtgc tagctattta cctgtgaaaa       180
     gtgacagtca acataatggg ctccgaagag tcgaagacac acgtggagca caacggctcg       240
     caacacgtgg aaatagtaaa catgcaagag cagcattcga acatgctgga agaaaacaaa       300
     ctactcttgt ggctaatttt gggagtagtg tcattacaac tagtgctaac tttggtggac       360
     acagtgaaga aacacatcca taagcgagca atgagaaaaa tggactcgat gattaaccta       420
     aaaaacatta cagtgcaaaa ataagcgatg aaaatgactg caggccagga aatagaagcg       480
     gtggtaaaaa ccctaagtaa aggactgaag acagggttag ctgcaaaaat taaagtaaca       540
     tttagtgcgg tagagcagct tataaaagtg cttgaggaca agcagtgtgt aaaagtattg       600
     aacataagca aaagagaata caccttagaa gtgagcaaat ttctcaaaaa cattgcaact       660
     gtgaaaaacg agacagtgaa agttaaaaac atctataaat acgcaagcaa agtgctacca       720
     agcattactg gaacactgat attgtcgaca cctaagggta ttatggccca cgacgaagcg       780
     ttcaacaaca agcagggagg ccgaataatt gtgattgcgt attaacaaag ccaaaatacc       840
     aatgtcgaca atcagactta tcatatcggt cctagtacta ggcgcaatac agttgtcatt       900
     gttttacgca tattggcagt tcatcataaa ttactacgct aactgaatcg tacagcagtg       960
     atgtaaacgt gacagcagtg gctggacaag caagatgatt atatcaacga acccgcggag      1020
     aggacttttg ctgttttagt gatagtggta cattagaaga aaaacagacc aaaagcagaa      1080
     gtgagcagca gcatccaaag gcagcgacga gcggaagcag cgttgtgcaa tactttcaac      1140
     cacgaagacc ttgccgtttt agtgatagta gtggactaga agaaaagcag ctaaagcaga      1200
     ggtgatcaac atcatccaga tggagagaga gagaaaacag acactgatgt tgcactaatc      1260
     tcaaccgcat aaggtaaaac aaactaacaa aaaaatatat atatatatac aaaaaaacac      1320
     aggtacaatt attataggac atatacctgc gaaaaattta ttaacaaaaa aaaaatatgt      1380
     taaaggttgt attatacata ttctcaatat ttgaaactac tatatggaaa aagaacttga      1440
     agcactactt ggaacgttga atactatttt aaacaatctg aaaaaacgac ccaaggaaag      1500
     ggaatatttg aaggaaacgg tacaaaagaa acttgaaata tctacacaat acaaggacaa      1560
     aatttttaca cttttattag ataaagattg ccagctaacg tcaacccaac aaaaaatttt      1620
     tttttcttct actaatctaa tatataacca aatacatgcc ataatagacg agttattaat      1680
     gaacgcaaag gcgaaaggta ataaaacttt cttcaccatt gcagtcaaca tattttttat      1740
     tgtgaaaatt aaaataaaaa tacgtaggaa aatggcagcc gaaatgatca aaatagcatc      1800
     agccctcgta ccacagtacg atgggaatgg cgaaaaattg aataacacaa ttgctgccct      1860
     taacgcatta aaaaaagcag taacacccgc aacagaaccc gttgcagtac aaattgtgct      1920
     gtccaaacta gaaaaaaagg ctaggtcagc agtaggacat gcaccagcca acattgacgc      1980
     aataatagac ggattgaaac aaaagtgtaa acagtacatc tcacctgacg tggtcttagc      2040
     aaaattgaac gctacccggc aaaacggggc gctaaacgcg ttttcgagcg aaatagagga      2100
     actcactaat caattggaaa ctgcatacat caacgatgca attccaattg atacagcaac      2160
     aaaaatggcc accaaagcgg ggataaaggc tctagcaaac ggccttaaaa acgcaggtac      2220
     tcaattgata ataagggcag ggaccttcac taatctcaat gacgcaatag gacgggctgc      2280
     agagaatgac aatgacacag ttgcaagcgc aaatatactt cattttaaca ataggtacag      2340
     acaaaacttt agaggcaccg catctagagg ttattatcgg caaggccaag gatggagaaa      2400
     caacaataac tcgtcttggc gtcaaaataa taattcaaat ggacgcaatt ccaattggag      2460
     aaacgacagt cctaacaaca ataatgaata cagaaataat gaccgtcgtc aacaaagagc      2520
     agatggcaat aatggcaaca ggaatgggtc aggacgagga agaatttatc aagcctcgtc      2580
     cgaaacaaat aacgaacaaa gaaacgatga agtagacgat cagcgggaga acggacaagg      2640
     tgatttttta gagagaagag atcgggtata ccaatcctcg caatgaatat aaatgcatct      2700
     aattttgttt gcatagaaac agcaatgtct gttgggaaaa taacactgat aatagacagt      2760
     ggagcggaca catcattatt caaaattaat aaagttaacc cggataaatt aataaataca      2820
     tcaagaaaaa ttaaattaac aggaattaca gacaacgaaa ttgaaacaat agccaccgct      2880
     aacacagagt taaattttgg aaatggactg aaaaccaaac atacatttca cttagtgtct      2940
     aaagaatttc caattcaaac cgatggaatc cttggacgtg attttcttgc agcaaataga      3000
     tgtaaaattg attacgagtc atggctgtta cattttgagt tgggcaatat aacagtatcg      3060
     gtgcccattg aagacaactt caagaatgga ttcatactac cgcaaaggag tgaagctatt      3120
     cgacgactaa caaacaaaac ataccagagc gaaatggtag tacatgctaa agaaattcga      3180
     gcaggaattt ttttgggcaa cacaatcatt tccagaaaag aaccattggc aaaattcatt      3240
     aatactacaa acgaaccagt atacatatct tatgatcaaa taaaccctat cactgagccc      3300
     cttgacaatt attatgtgct aaaaactaac aaaaccagta agcacgagaa caaacgtaaa      3360
     gaaaacatct tgaaggaagt tgacactgca aatataccta attcgataca aacagagctc      3420
     aaacagttaa tagcggatta ttcggacatc ttctgtttaa acgaagatac actttcaact      3480
     aataattttt attctcaaga tatccacctg tcagataata ttccgactta cattccaaat      3540
     tacaaacaaa tacattcaca gacgggagaa atacaggccc aagtggataa aatgctaaag      3600
     gaaaatattg tagaacattc cgtttcaccg tataattccc caattttgtt agtgccaaag      3660
     aaggcaaatg aaaataataa aaaatggagg ctggttgtcg attttagaca acttaacaaa      3720
     aaaatactag cagacaagtt tccactacca agaatcgatt ccatcttaga tcagcttggt      3780
     agggcaaaat attttagtac ccttgacctt atgtcagggt tccaccaaat ccctctttca      3840
     aaagaatcac gtaaattcac agctttttca actccgtcag gccattacca atatacgcga      3900
     atgccgtttg gattaaatat cagtccaaat agttttcagc gtatgatgac aatagctatg      3960
     gcagggttaa cacctgaaca ggcttttata tatattgatg atatcattgt aattgggtgt      4020
     tctattaagc accacttgac aaatttaacc aaagtatttg accgacttcg tcactacaac      4080
     ctgaaactaa atccaagcaa atgtaaattt tttcaaacag aagtacattt agggcacaag      4140
     ataaccgata agggaattta tcccgacgat tcaaaatttt cagcagtaaa aaattttccc      4200
     attcccacaa atgctgacga tattcgcaga tttgttgcat tctgtaatta ttacagaaaa      4260
     tttgtaccaa attttgcgga aatagcgaag ccattgaatg atttattaaa gaaaaacaca      4320
     aagtttgact ggactaataa atgtcaaggg gcctttgaaa aattaaaatc ctatttatta      4380
     tctccacaaa ttttgaagta tccagatttc acaaaagact ttatcattac cacagacgca      4440
     tcaaacatag catgtggagc aattttatca caaaatcacg ccggtaatga cctcccaatt      4500
     gcttacgcca gtaaaacttt taataaagcg gaatccaaaa accatacaat tttccaagaa      4560
     atgattgcca tacactgggc aataaatcat tttaaaccct acatatatgg aagaaaattc      4620
     aaaattagaa ctgaccacag accattggtg tatcttttcg gtatgaaaga acctaccaaa      4680
     aagcttacgc aaatgcgact agaccttgag gactacgact tcgaaatcga acacatcaag      4740
     ggaaaaaata acgttggtgc tgacgctctc tcaagagttg tcattacatc agacgaacta      4800
     aaggagatga cgatcttaag ggtaaatact agatctatga caaaatataa aaccacaact      4860
     acgaactcaa atccgaagga ccaagaagca caatgtcaac ctatgaagta ggaaatacct      4920
     cgaaaaccta catcttacct aaacttcgta caacaacacg ttcaaacgga gagataaaaa      4980
     ttagcataat ggacccaagg gagaaaaaga attatgtgca gtcacagcta acggaattca      5040
     gacactagag tctgtttgtc taaagctgaa tgacttgctt aaagaaaata atttaaagaa      5100
     agtagcgatg tcaacacaaa atgtactatt tacgatttta ccagtagaat cgtttaaaag      5160
     gatcgcgaat aagtcattaa cagatgtgga aattctaata tatacgccac gaaggaaaat      5220
     tgacaacgta gatgaaattg aaaaaatttt gcacgactat catatgacac ccacgggagg      5280
     gcacatagga caaaaccgat tatacaagaa attaaaagac acatacgatt ggacaaatat      5340
     gaaggaaaca gtcgctagct ttgtaaaaac ttgcaaacaa tgccaaataa acaaggtata      5400
     taaacatacc aaagaaccca tgattgaaac caccacacct gctaaaccat ttgatgtaat      5460
     atcaattgat actgtaggac ctttaccccg gacaaataac aacaatcggt actgtataac      5520
     aatacagtgc gacttaacga agtacgttgt tataatacct gtacaaaata aagaagcctc      5580
     gaccatagca agaagcctgg tcgagaattt tatactaaca tttgggaact ttcttgaact      5640
     taaatcggac caaggaacgg aatataataa tgaaatattg aataaaattg gaaaaatact      5700
     aaaattcaaa cagaatttcg ctacagccta tcatccacaa accataggtg cattggaaag      5760
     aaaccataga tgcctcaacg agtatctaag atctttttgc aatgaacacc ataacgattg      5820
     ggatgattgg gttaattttt ataaatttgt gtataataca accattcaca cagatacaga      5880
     ttatactcca catgaattaa tttttggtag aaaggcaatt taccacagga tatctttaaa      5940
     acaaaaatag aaccgattta taacccagaa ttatattata acgagctaaa attcaaactc      6000
     cagaaatcca acttgatagc aaaaaacaaa ttaatcgaag gaaaacaaaa cagactacaa      6060
     agtcaaaata aaaatacaaa tccaataagt ttgtgggacg gagatttggt ttacattaca      6120
     aacgaaaaca ggaaaaaatt agatccccat tacatcggac catacaaagt caaaaaagtt      6180
     gaaaaagtaa attgtcaatt ggaagaagta agttcaggaa aaaccacaat ggtacataaa      6240
     aacagaataa taaaaatgaa ttgacttaac attaaaatag attaagtaaa caaccgagcc      6300
     taacttgtta aaaaaataat aaaaacaaaa aaaagtgaaa aaaaaacaag aaggtaatat      6360
     taaaatcggt ttagaatata atacttttag aactttataa cacaaaagaa aaaaaacaaa      6420
     aaaggggaaa cacttaacat taaagtatca aaaattataa aaaaaggaaa cacttaattt      6480
     tatattataa tttaagaaga cctctgggat agaattttta tttctcatat gaacgatttc      6540
     gttccatata cataccacta catcattcaa aaaaaaaagg gggaaagg                   6588
//
ID   Gypsy-468_AA-LTR repbase;    DNA;    INV; 593 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-468_;
KW   Gypsy-468_AA-I; Gypsy-468_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-593
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-593
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3075-3075 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 593 BP; 176 A; 136 C; 118 G; 163 T; 0 other;
     tgtgctatgc atcttcccgc acagttaatt acatttcatt taaaacatac actcagttag        60
     taagcactca tcgatgcctg tttccaaaac gaaacactgc acatgttaag aacggtcagt       120
     gctgcgtgtg cggtacgagt attctgaccc acatgttttg ctgactcgta ttacgggcgt       180
     agttgccccg cagtgcaggg tacaagcaaa gcgtcaaata accaaaataa tggtatcgat       240
     gggttcgtac ccaaaagtga attatcatca acattatgtc ccaggcgtct tcgctctctt       300
     tcctacatat acaattatag aagatgtttg taaattatcg aaacttggta agctataaaa       360
     acctttgcac ttcagaaata cagacagtct tgttccaacc agagacccac ttttattcga       420
     agtgattttc gactgtttcc agtcgagaac accactgacc gaagaaaaat ccttagggcg       480
     attctaggcc aatgatggct ctagaaaacc gccaggaact cagagtttgg atcgtgcgcg       540
     aaagtacacc gtgtctacga aacatcatgc accgtaagtt tcggcttgtt ata              593
//
ID   Gypsy-469_AA-I repbase;    DNA;    INV; 5340 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-469_;
KW   Gypsy-469_AA-I; Gypsy-469_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5340
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5340
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (05-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5340 BP; 1656 A; 976 C; 1304 G; 1404 T; 0 other;
     aatttggcga cgaggattga aaacaaaagt acagtggaag tgaaacgttt ttcttgagct        60
     gggtgaggat tttgttggag tttggagcag aaggaagaga tcggcgtggt tgtcgcaagg       120
     gcggagcact acggaaattg aggttagatc tgtggatgag tgaagtaagt tgtgaatgga       180
     agttaaacag aaacaatgta acatgtgagt gattcccaat gtttttcgtg tagcaaccct       240
     tttcgcggcg attgctaaaa ggcccgcatc gatatttttt gaatgatagg gagggtggtt       300
     gaacatttaa aatagattcc cacattacag ttgcctaatt gtgttttggc atgcggagag       360
     agcacaaaga caggtgagta aacaaaaaaa gtatgtattt tgtttgtgtg aatttacata       420
     tcttgaacat gaagttttgg ttttgtacaa aagaggaata gtgatttcca aacaaatctt       480
     gtggcattag aggataacaa gttgatttga taccatatat ggaaaagctg gttaggtacc       540
     aacatatgag aagggttttg ggaaatcgtg gttgttttgg tggaactaag gttgtgtacc       600
     tattatggac atgcaatagc tatgtaccta ccaaagcgga aaggttgggt tttgaaggaa       660
     ttttggaaat cttggttgtg tttctggaat taaggttgtg tacttataat ggacatgaga       720
     aggttgtgta cctacagaag tagaaaggtt gtgtacctaa acaagaatga taaggttgtg       780
     tacctaaaca agaatgataa ggttgtgtac ctacactatt tggaagtttg tgtgactaaa       840
     ataattgaaa ggttgtgtac ctataaatcg ttcagaggtt gtgtacctac aaatagttgg       900
     atggttgtgt atctttcagg catcaggtta tgtactttat gaaatttgtg tgttctaaat       960
     ttaaaaaaag aagaggaaac tgaaaggtac ctaaatgttt ttgcggattg gaggagtaag      1020
     aggagttcat gttgtgatcg aaagtcgtat actggaaatc atgaatgata atatttaaat      1080
     aaataaataa aataaatgcg ctatacaata ataatttgtt ttattcctat gattgaattt      1140
     ttatcagttt ttcccggata tatatattta tataaaattc tggaggtgaa tttaacgaaa      1200
     aacattggga aggaaaatac ttgccaaaga ttattttgtg ataaaaagtg gatttggtta      1260
     cattaatttc gtttcacagg atgtcgtctt acagccgtat caaaccattc gacgtgactt      1320
     cggaaaccag taatcttcca actgaatggg aaatatggaa aagtgatttg gaatcattct      1380
     tcctggctca gaatatcgag gcacagcggg ataaacgggc tcaattagca tatcttggag      1440
     gaccaggcct ttaggagttg ttacgtcatc ttccgggagt aaaccaggtt ccacatgtca      1500
     ctgccgatcc gccgtattac gatgtggcaa tcaagtgtct tgatgattac tttgagcctt      1560
     tccgtcgtaa atcatacgag cggcaccttt ttcatcaaat agtgcagcaa ccggatgaaa      1620
     gattcatgga cttcgttatg cgtctacgga agcagattgc gcggtgtaat tacaactctt      1680
     gtgttgtaga tgaattgatt gcagatcgta tcacgcaagg ttgcaagtca caagagcttc      1740
     gcacgaggct gcttcagaag gaccgttcgc tagaggaaat catcgcactg gggaccagtt      1800
     tggctgaatc gttggaccag tccaggaagt tgtcgaggtc ttccatgcaa actagaccgg      1860
     attctgaagt aaactcggtt gcgaagccat cattccgccc gtttgtaaac cgaagatcac      1920
     ccaatccgtc aaagtttccg aatcgcaaac agcctgatcg tcaggtgaat accaggtgta      1980
     tttgctacgg ttgtggacgt cgaggccatg tacaaggaag tattgagtgt cccgcaaaag      2040
     gtacaaaatg tgcggcatgt ggaaaatctg gacattgggc gaaacgatgc tatactactg      2100
     ggcaaggcta caagcgtcat caaagtgata ccttcggagg accgaaagcc aaacgtattc      2160
     gcgccgtgct agaagaaact gaagaagatc aatccaagga tttcgtgttt tacgcgatgg      2220
     gccgaaatgt ttttacgttc aaggttgggg ggattgaaat ccccatgacg atcgattcgg      2280
     gagcagacgc aaatattata acaatgaata tttgggagca aatgaaggac gctggagtac      2340
     aaataacaga tgcaactaca caaattgaca gatctctcat tgcatatgga gccgaacagc      2400
     ctctgaagat tacaggaatg tttcgttcgg agattcaggc ggctaacaat aaggtggcag      2460
     ctaagtttta tgtcgttgaa ggtggtcaac gctgtttgtt aggtgaccaa acagccaaag      2520
     atcttcaagt tctcaaagtt ggatatgata ttgcctcaat tgactcgaaa cgcagggaac      2580
     catttccgaa aatccgagga gtaattgttg aaataccaat caacgatcaa gtgcaaccgg      2640
     tgcaacagcc gtataggcgt ccaccgattg cgatggaaga tcagattgaa gataaactaa      2700
     gatcactgct ggaactcgat attattgaac gagcgccggg accatcacca tgggtttcgc      2760
     caatggtgcc tgttctcaag gattctggcg aaattaggct gtgcattgac atgcgtcgag      2820
     ccaaccaagc ggttcttcga gaaacccatc cattgccgct ggtggacgaa ctgttgtcat      2880
     cggtgtcagg tgcagcgttt ttctctaaac tcgacataaa agacgcgtac catcaagtcg      2940
     agctgtctga aagatcgaga ccaatcacaa cgttcatcac caagtatggc ctctacaggt      3000
     acaaacgtct aatgtttggg gttagctgtg ctcctgagct ttttcaaaag acaatggaga      3060
     caataacagc tggccttgag ggagtgattg tatacctgga cgatgcggta gtatttggac      3120
     gtaataaggt ggagcatgac aggaggttag cagccttgtt gaagcgtttt tccgagtatg      3180
     atgttttact aaacgatgaa aaatgcttgt atggagttga aagtttggag ttcttaggtc      3240
     atcagcttac aactgccgga gttcgaccaa ccgagaatag actcgcagcg attcaaaaat      3300
     ttcgcgaacc gcataatgtt tcagaactgc gaagtttcct aggactgatc tgttatgttg      3360
     gcaagttcat tccgaatctt gcttcgaaga cagaaccact aaggaattta ctccattcag      3420
     gaacccagtt caaatggact tcaaaggaaa gtactgcctt cgagtcgata aaaatggcta      3480
     tttcgaaaat tcatcatctc ggattctttg accctaagga ccgaacgaag ctgatgacag      3540
     acgcaagtcc aacgggtttg ggagctgttt tactccaaga agattcacaa ggaagaagtc      3600
     gaataattgc gtatgccagc aaatcattga ccgacctgga aaagaagtac tttcaaaccg      3660
     aacgggaagc attatcgctt gtttggggcg tggaaagatt ccgtctatac ctacttggaa      3720
     tcaaatttac attgttaact gactgtaaag ccctaaagtt tcttttcagt ccaaggtcga      3780
     gaccctgtgc tcgtatcgag agatgggtgc taaagttgca aaactacacc tacgatgtag      3840
     aacacattcc agggtctgcc aatcttgcgg atgtcttctc aagactttgt gatctaactc      3900
     cagaaccatt tgatgaaaaa gtcgaagcgt atattcgaag cgttgtagct caggctgttc      3960
     ctgaggcaat aaccttacag gcagtgaagc tagaaacgga aaatgacgaa gaactccagc      4020
     agatattgga ctgcctcaga tcaggtaaaa cagaatacgt aacaaaagag tataagccgt      4080
     atatagatga acttagccat gtcgatggtg ttctgctaag aggaaatcga ctggtgattc      4140
     catcaaaact acgccaatgt gtgctagctg tagcgcacga ggcgcatcca ggaattgcgg      4200
     ccatgaaacg tcgtatacga caaaaggttt ggtggccgtc aatagataaa caggttgaag      4260
     cggtcgttaa aaaatgcaaa cagtgtatac tcgtttcttc tcttggacca ccagagcctg      4320
     taaaaagtac gaaaatgccg gaaaagcctt gggtggacat agcagtggac tttatgggac      4380
     cacttccttc gggacacaca ctttttgtgc tggtggacta cttcagtagg tttacagagg      4440
     ccattgtcat gaaacaaacc acggcaaaac gtacgattca ggctatgcat gagacgttca      4500
     gcagattcgg aattcctgaa tccattagat gtgacaatgg acctcaattt gtgagcgaag      4560
     agatgcgttc ctactgtaat gaatacggta tcacattacg aaaaacaacg ccgtattggc      4620
     cacaagcaaa cggcgaggtt gaaagggcaa ataagacgat attgaaacac ttaaaaatca      4680
     gtcaacaatc aacaagtcag gactggatgt gggacctaag atcgttttta cttatgtaca      4740
     actctacacc tcatagcaca accggagttg cgccttctgt tttgatgttc aaacgggtat      4800
     ttcgcgataa actgccttgt ttcagtgaac agtcgtcttt gaatgaagag gaggaggagg      4860
     tgatggacag agacagagtg cgaaaacaaa aagacgctga ttatgcagat gctagacgtc      4920
     atgcgaaagt atcagagctg aaggtaggag acactgtagt ggttaaaaga acgtttaaag      4980
     aaaacaagct ttcaacaacg ttcgctcctg aggaatacac tataacaaaa ctcgtaggat      5040
     cagatgcgac agtgcagtcg aatagttcgg gtagaactat gcaaagaaac gtagcacacc      5100
     tgaaaccact tccagtaccg gacgacataa tagcaaacga tggtttcaag gaacagctag      5160
     aagagcatca tcgaacggat gattctaacc gcaccagtag taatggaatt gaagaatctc      5220
     aatccagcat acgacatgac gaacaatctt cgaatcgatc gatgaggatg gtacgcaaac      5280
     cagcttacct taaggattat cagaccaatg ctgtttatga cgctaaaagt aatgggggga      5340
//
ID   Gypsy-469_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   05-APR-2019 (Rel. 25.10, Created)
DT   05-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-469_;
KW   Gypsy-469_AA-I; Gypsy-469_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3076-3076 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 226 BP; 78 A; 42 C; 60 G; 46 T; 0 other;
     tgtcgggacc agatgcgccc ttttgtaaaa tgacaacagc actggtcacc cgagtgaaga        60
     actgtcactg aggagcacgc gcttggacac gcagagttga agacgccatc gcggagatca       120
     cgagcgggag aaaaagggag aacagaaaaa gtgtaaaagt ggtcggaaat aaaacttgta       180
     tttcagagtg aaaatcagtg ataaatattc tttttaatat ccgaca                      226
//
ID   Gypsy-46B_LMi-I repbase;    DNA;    INV; 3775 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46B_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3775
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. 5'-portion is identical to that
CC   of Gypsy-46_LMi-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1588..1677,1647..2762,2752..3048)
FT                 /product="Gypsy-46B_LMi-I_1p"
FT                 /translation="MYLKGIKEEAEIRKICDKIRDTKIMMIIGDRYQNHDD
FT                 NWRLVKSLLGKRGEDKVGQYYKTYKGMLFRRMSVDSDKWKLCWPENCVDVL
FT                 IKYVHESFGHCGTQKCIQKIQENIYFYNIARRVKKLVTTCDRCQRVKVSNQ
FT                 TCKGLMQNILPQELLETVAVDFYGSLPKTRGGYSHIFVAVDLFSKFIKLYP
FT                 VKKATSKTIINKFRNDYFQTVGKPKKILSDNGTQFTSKHWKSFIQDENIRH
FT                 ILISAYHPSSNPAERYMREIGRLFRTYCNKNHASWIDYVYEFEEILNSLQH
FT                 TSTKFCPYEIMFGKSSPNLISELVSYPPCKELSKQEREEIVRRTMKEQAEA
FT                 RKRRHDRSLKTTRFDIGQMVLVKAQERSKAINHELKKFFDIYISALSKLWE
FT                 TLILMLTGCLQVRVSQVRKSIWTEEYNRTQAIQTVVGNNKTLYRCYFCKIY
FT                 CSYKSFVYMYSLMKYLETCIVNMLDINFCKPQESTHSVCAKCVGKHWVSSY
FT                 VVAYF"
XX
SQ   Sequence 3775 BP; 1243 A; 622 C; 815 G; 1093 T; 2 other;
     tgggaatagt ctgagtaaga agagtgtaga attagatttc attagatcat aatagagatg        60
     cagaagacat gcatgaagag cctgaagaag ccatggagga tattattatc atgaactcgt       120
     aaataccaag gtggaggaag ccaacaaatt agagaagaca aaaagagagc tgagaagagt       180
     cttgtgatgt gttcgatgac tgccagacga aaaactacgt gtaccttgtg ggtcaaaccg       240
     cagaaccatt ttacatcaaa ccatacggtg tccctattga aaaaaagaaa gctgtagaga       300
     aagaacttga aaagatggaa aactggaaca taattgagag gagtgaatac aacaacccga       360
     tcatcgtgat atccaagaag aatggagatg tgaggactgt acttgactcc agacatctaa       420
     acaagttttt agaaagggaa actgaccatc cagagagcat ggacgaacta ttgtatagat       480
     ttggacatat aaaatatatg acagcctgga cttgaattct ggttttcatc aggtccactt       540
     gccagagact caaggaagta cactgctttc ttgtataaca gaagaaacta tcagactgcg       600
     tggtcccatt caaattaaat gttttggtgg ctgaatttat caagctttgg atttgtatta       660
     ggcaaagatc ttkttgaaag ttaactgtgt attggatgat atcctttcac ataagcttac       720
     tggaagagtg ttcaaaagat tagagcagga gggatgtctc ttaagctaga aaaatgtaaa       780
     tttgctgtgg aacagttaaa atttcttggt cacattgtaa ctgaakaagg tatactccca       840
     gacaatgaga aaattgaagc cggccgtcgg ggtcgaatct ccctcgggca tggatatttg       900
     tgaggtagtt caaatagttt taagtaggga ctgatgaccc cgtagttaag tccataattt       960
     acaacatttg aacattttga tagcaaagtt tcctgtgccc aagaccaaga acaatcaaat      1020
     ctttttggca tatgtggatt ttaccgcaaa tatataagta ctcaagcctt gaatgcccca      1080
     tgtttgaaca acctgctgaa gaaaaatact gtttggaatt ggtcagaaga atgcatacaa      1140
     gcctttgaag agataaaaaa gcagctttgt aacggcaata ttctatacag acggacttgt      1200
     catcaccgtt ttgtttaagt actgacagta gtgattatgg aattggtgct atttgtttca      1260
     agtgaacaat gataaccagc cagaacacgg accattgcat ttgcaagcag gcattacaga      1320
     aacacgagaa ggcaacactg ttacagaaaa ggaactttta caattttttg gctttcacaa      1380
     aattcagaac tacttgttag gcacaaaact attgtattaa gaccataagg ctaggagtgc      1440
     aaacttacat aaccggatta agatgtcact gtgcttgcaa cagtttgatt tctcttggaa      1500
     tacattaagg gcaaggacaa tttgttgctg attcactctc tcgtttgcca gtgggggggg      1560
     ggagcctgtg aaaaggaatt cagagtcatg tacctgaaag gtattaaaga agaagcagaa      1620
     atccgaaaaa tttgtgacaa gattagagat accaaaatca tgatgataat tggagattag      1680
     tcaagagctt gttaggcaaa agaggggaag ataaggtagg gcaatactat aagacataca      1740
     agggcatgtt gtttagacgt atgagtgtcg acagtgataa atggaagttg tgttggcccg      1800
     agaactgtgt tgatgtatta ataaagtatg ttcacgaaag ttttggccac tgtggtactc      1860
     aaaagtgtat acagaaaata caagagaaca tctattttta taacattgcc aggagagtta      1920
     agaaattagt gactacatgc gacagatgcc aacgagtcaa ggtgtccaat cagacatgta      1980
     aaggtctcat gcagaacatc ttgccacaag aattgcttga aactgtagct gtggattttt      2040
     atggaagtct tcccaaaacc agaggtggtt atagccatat atttgttgcc gtggatctgt      2100
     tctctaaatt tattaaattg taccctgtga agaaagccac cagcaaaacc ataatcaaca      2160
     aattcagaaa tgactacttt cagacagtcg gcaaacctaa gaaaatcttg tctgataatg      2220
     gaactcagtt tacctcgaag cattggaaat cattcataca agatgaaaat atcagacaca      2280
     tattgatttc ggcataccac ccctccagca atccggcaga aagatacatg agggaaattg      2340
     gcagattgtt caggacatat tgtaacaaaa atcatgcatc atggatagat tatgtgtatg      2400
     aatttgaaga gattttgaac agccttcaac atacttccac gaaattctgc ccttacgaaa      2460
     tcatgtttgg aaaatcatcg cctaacctaa tcagtgaact cgtcagctat ccaccttgta      2520
     aagaattgag caaacaagag agagaggaga tcgtacgtag gactatgaag gaacaagctg      2580
     aagccaggaa gagaagacat gacagaagtt tgaaaactac cagatttgat atcggacaaa      2640
     tggttttggt caaagcccaa gaaagatcta aggctatcaa ccatgaactc aaaaaattct      2700
     ttgatatata tatatcggcc ctttcaaagt tgtgggaaac cctcatccta atgcttacag      2760
     gttagagtat cccaagtcag gaaaagcatt tggactgagg aatataacag aactcaagcc      2820
     atacagacag tagtgggtaa taataagact ttgtacaggt gctatttttg taaaatttat      2880
     tgtagctata agagttttgt atatatgtat tctttgatga aatatcttga aacttgtatt      2940
     gtcaatatgt tggatataaa cttttgtaaa cctcaggaaa gtacacattc tgtgtgtgct      3000
     aagtgcgttg gcaagcactg ggtttctagc tatgtggtag catacttctg atttcggttt      3060
     ctggtgccac atctcctact cattctgtaa cctgttcaaa ttatctcata tctatcattc      3120
     tatctttctt ctttagtgtt aaggtatgaa atgtgtgtat gtaatttttt tatgttaata      3180
     agaatattga tttcaatata gtttgttcag ttagactttt caatgtatta atttatgtca      3240
     cagttaaaat ttgaattcaa attgttgcct gagtattaaa gagctaaagt atttgagata      3300
     ttgatagaag tcatgataga atcagttaat taatgttagt gtctaatgat tttgtaagat      3360
     accaagtttc atgtcctcaa agtttaaaaa attcagttca gaatgtgaga acagtaaatt      3420
     ttacagtata gttatgtgga tattttttgt catatgtttc ttgtgtattt tgttttgatg      3480
     cttaaaaagg tcagaaaagt tcagtgtggc agattcttga gtgtcagctg ttcccgattc      3540
     tgccctctgc tcttgggagg ccataccctt gtcacctact tactgcactt ggaactttca      3600
     ggatctggtg atgctgcgtg tgtggactgt gctgtgccaa ccccagacag gactaagtga      3660
     ggtactgatg cagccaagcc agccaccggg tccaagccat ccaaagtagg tgctttactc      3720
     ttacatcacc tcgacttatg agggcatcgt cgagctgatg gggggggggg gtatt           3775
//
ID   Gypsy-46_AA-I repbase;    DNA;    INV; 3887 BP.
XX
AC   supercont1.286;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_AA_;
KW   Gypsy-46_AA-LTR; Gypsy-46_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3887
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.286; Positions 1284105 1287991.
XX
CC   Positions [2009-2485] - Integrase core
CC   'AAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1922
FT                 /product="Gypsy-46_AA-I_2p"
FT                 /translation="MSVSEGAYIGTEDAGFTLVEKPDPCMHPANTKESGRD
FT                 VRGAGQSSASGTIITAHDQVTSGEQRPDTLKRPTTGSDAQLGSSSTMSSGE
FT                 EVAPGGSARRQEVSTGSSDSGYGGSALALASVWNRPIPGVAPRGAGHWRSH
FT                 GATRTYAFMRDMLSPQYIADPLYVMGYKWTLADVEHNVERIQVAGHIVSVS
FT                 GVMRAGTNPPELSDRGAKLWSNAVLTPVDASMQIRNLIPTGGSVNLSVMTQ
FT                 LVSKYHGDLHTLARDEAPLLRMLLMFLTFLPAGTPGYASNTIKMLRLGANQ
FT                 GKCTKTLHPYNRRGVLDNTIQIPANSADCDVRIVPLSTYVNALCAKPSNND
FT                 RLAGFNILEAEIVAIESHNLEQNWFMAFLIAHTTTLWWNCAATEEYDFSSD
FT                 PKAAAGSKSKFVIKTMTRASCVYVPGEWKKIAIVVVDQDYSGLTKFSVPHL
FT                 GDAIKFETRIADFTKKVFTYLGLTENGAAPNPHTMLMAIREMCKRTALSGD
FT                 MGTVLSMVQELAFTVPLGGAVRTDGVFGASGVGRFDINAADYLLDKSRTTD
FT                 LAKEWDDMSGWITGYGDWSVTPTGKFMDALFQCDNKWM"
FT   CDS           1916..2863
FT                 /product="Gypsy-46_AA-I_1p"
FT                 /translation="MDVKKVLSKCSKCKESKYPTVPTIPPMGEQKSATRPF
FT                 QMIALDYLSGFVRSKSGNTDLLVCLDIFSKYVRLFPVKKISVDSLTKIIES
FT                 EWFFKLGVPQTLISDNAVTFLGNKFQELLKKYNVHHFKNARRHCQNNPVER
FT                 VNRVILACIRTYCQSDHRLWDTQIAQIEFAINNTKHLSTGYTPFFLVHGYE
FT                 SIVDGRDHLQDRQTSDPSVDQFTQRREVVVGPLYEEVVRNNKKQFEKYKKN
FT                 YDSRHKALPPTFSIGQKVYKKHFKLSNAADHYAAKLGPVYVPCKIIARRGA
FT                 TSYELEDENGRNLGVFAAQDLIPE"
XX
SQ   Sequence 3887 BP; 1192 A; 759 C; 927 G; 1009 T; 0 other;
     tttaaaatac cagtaagtaa gatcaagcga caaatttaag agagaaataa aaacagaatt        60
     ataaacagat acaaaattac ttcaaagcaa cacgttacct gatccttaca cttaacgtgt       120
     cgttgtgaat ataatattgt ctctatcgga tttctttcga aggataaatg agtgtttctg       180
     agggtgctta catcggaaca gaagacgcgg gcttcacact ggttgagaag cctgatcctt       240
     gtatgcatcc cgccaacacc aaagaatcag gacgtgacgt aagaggagca gggcaaagtt       300
     cagcatcagg aacaattata acagcacacg accaagtgac atctggggag caacgacctg       360
     ataccctgaa aagaccgaca actggttcag acgcacagtt aggatcatca tccaccatgt       420
     cctcgggcga agaagttgca ccgggaggtt cggcccgtcg tcaagaggta tcgacggggt       480
     catctgatag tggctacgga gggagtgcct tggcactagc atccgtatgg aaccgaccaa       540
     tacctggggt cgcaccaaga ggcgcgggac attggaggag tcatggggcc acgcgcactt       600
     acgctttcat gcgcgatatg ctcagcccac agtacatagc tgaccctctg tatgttatgg       660
     ggtacaaatg gacactcgca gatgtggagc acaatgttga gcgcatacag gtagctggac       720
     acattgtgtc ggtgtcaggt gtgatgcggg cggggacgaa cccacccgag ttgtcggaca       780
     gaggtgcgaa gctatggtca aacgctgtgc tcacgccagt cgacgcttcc atgcagatcc       840
     gcaacttgat accgacaggt ggaagtgtca atttgagtgt gatgactcaa ctcgtgtcaa       900
     agtatcatgg tgacctgcac acgctggcga gagacgaggc gcccttactt cggatgctgt       960
     taatgttctt aactttttta cctgctggaa cacctggata tgcatcaaac accatcaaga      1020
     tgcttagact tggagctaac caggggaagt gtacaaaaac gctccaccca tacaaccgta      1080
     gaggcgtatt ggataacact atccaaattc ctgctaatag tgcagactgc gatgtgcgca      1140
     tcgtaccgtt gagtacttac gtgaatgcgc tttgtgccaa accgagtaat aatgacagac      1200
     tggctggttt taacatctta gaggctgaaa tcgtcgccat tgaaagccac aacctggaac      1260
     aaaactggtt catggcattt ctgattgccc ataccaccac tctttggtgg aattgcgcag      1320
     ctacagagga gtatgacttc tcttcggatc cgaaagctgc cgcggggtcg aaatcgaaat      1380
     ttgtcataaa aaccatgacg cgcgccagct gcgtctatgt ccctggtgag tggaagaaga      1440
     tcgccatagt tgtcgttgac caagactaca gtgggttgac taagttcagc gtaccacatc      1500
     tcggtgacgc gatcaagttt gaaaccagga tcgcggactt cacgaagaaa gtgttcactt      1560
     acttagggct cactgaaaac ggtgcggctc caaaccccca cacaatgctc atggccataa      1620
     gggaaatgtg taaacggaca gctctatctg gcgacatggg caccgtactg tcaatggttc      1680
     aagagctggc ctttaccgta ccgcttggcg gcgcggtgag gacagacggc gtgttcgggg      1740
     cgtctggagt agggaggttc gacatcaacg cagcagacta tttacttgac aaatcacgaa      1800
     caactgatct tgccaaagag tgggatgata tgtctggatg gataacgggg tatggtgatt      1860
     ggagtgttac acctactggt aagttcatgg acgcactgtt tcagtgcgac aacaaatgga      1920
     tgtaaaaaaa gttttatcca agtgcagtaa gtgtaaagaa tctaaatatc caactgtgcc      1980
     aaccattcct ccgatgggag agcagaaaag tgcaacacgt ccttttcaaa tgatagcact      2040
     tgactattta agtggatttg tcagaagtaa atctggaaac actgacttat tagtatgttt      2100
     ggacattttt tccaagtacg ttcgcctgtt tcctgttaag aaaatcagcg tggacagctt      2160
     gacaaaaatc attgagagtg aatggttttt caaactggga gttcctcaaa cattgatctc      2220
     agacaatgcg gtaacatttt tggggaacaa gttccaagaa ttgttaaaga agtacaatgt      2280
     ccatcatttt aagaatgctc ggcgtcactg tcagaacaat ccagtagaga gagtgaatag      2340
     agtcattttg gcatgcatca ggacttattg tcagtctgat catcgtcttt gggatacgca      2400
     aatagctcaa atcgaatttg ctatcaataa tacgaaacat ttgtccactg gatacactcc      2460
     gtttttcctt gttcatgggt atgaatcgat cgtagatgga agggaccatc ttcaagatag      2520
     gcaaacttct gatccatcag tagatcaatt tactcaacga agagaagtgg ttgtgggtcc      2580
     tttgtacgaa gaggttgtta ggaataataa gaagcaattt gagaaatata agaaaaatta      2640
     cgatagccga cacaaagcat tacctccaac gttttccata gggcagaaag tgtacaaaaa      2700
     gcacttcaag ctgtccaatg cagcagatca ttatgctgcg aagctaggtc cagtgtacgt      2760
     cccttgcaag ataattgcca ggagaggggc aacttcttat gaactggaag atgagaatgg      2820
     caggaattta ggtgttttcg cagctcaaga tttgatcccc gagtgaatgg tatattaagt      2880
     gttaattgtg tgagttagtg tgaatttgtg tgaacagcta attatttgta gatgagattt      2940
     tgtatggtgt gaacaattgt atgcagtgaa tttgaatcaa tgaatgttag gataaagatg      3000
     gccatctaaa gtatggatga gaaaaatgtt tgaattgagt gttttgtagt gtgaaactaa      3060
     gtgtaaacga gtgaagtgtg tagtatgtta atacgtagtg tgttaatacg tcatattatg      3120
     agcagtcgca atagccaaaa gatgccgtct gtactcttta ggcgaggtaa gaacaaagtc      3180
     ttgccttctc agtcataaga ttacttttgt agtctcttga cgcgaaaata ttcaaagaga      3240
     taggtattaa aatatgcagg aacaaaaaaa acgcttaaaa cgccggttaa gaaaaagtac      3300
     gaatataaga ctatcattaa aatcctgtct agacagtcag aagcgatctg aaaattcttc      3360
     tgacatggta agaaagaatc gagcataact aaatctaacc agactggtcg tgaggaacct      3420
     tcagtattct catgactcga caggattcaa tcgaaaatat aaaccaaatc tacaaattgt      3480
     gagccgttgg agattcttag catcccctcg atgcagaaat agtatttgtt tttgtatggc      3540
     agatgctgaa ctgaacacaa ttggtataac atagttcaat acagattatg aaaagagttc      3600
     taacttttca atatcaaaca gtcagatcaa aatagtttaa aacgataaca gaagtaaaat      3660
     cacagtaaaa atatatcatg cctctgtatt agaactcaaa atctgacccg acaagaattt      3720
     tctctcagat ggataacgga ttatacttga caaaactgaa cacttgttta tctggacggc      3780
     aattggctgt cgtgtgagtg gatttgactg tggtaattaa gacatcagta atattgagaa      3840
     ggtcatcata gatgctctcc ccatattact gtctggtgtg ggggtat                    3887
//
ID   Gypsy-46_AA-LTR repbase;    DNA;    INV; 1325 BP.
XX
AC   supercont1.286;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_AA_;
KW   Gypsy-46_AA-I; Gypsy-46_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1325
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.286; Positions 1282780 1284104.
XX
SQ   Sequence 1325 BP; 370 A; 310 C; 285 G; 360 T; 0 other;
     tgtaacctgt tcttctcgct tgatggccgt ggcgggcaat cgttgttccg tgcaccgagc        60
     ccttagtggt gctctcagcc tcgccaatca acaaagaagt tttggattat taataccgtg       120
     tcaaatcact acactaacca acagaaacaa cagaacaaga tcttcgggtt gatcgttatc       180
     aagtgtcgat cgaccgcgcc gcatgcctca ttggatgctc cgctgggcgc aaactgctta       240
     atgcacagac aaattaaaac ttgattatcc ccatagcagc attttataaa taccacccac       300
     tcattccact aatagccaat caatcattga agcaccataa aaacccatgc accggtatca       360
     ggaacactac ctgcactcgt caacttcaga gagatcaata ttctcccgtt atcagagatc       420
     ccgatcaacc atgagcacca ctagatcgtc tatcactcac gagtccactc acttagtgcc       480
     gataaaacta atgcacaaga ggaggagaac caacagttat cggttaatct ttaagcagac       540
     cgcgtgaaac ccagtaaagt gtgtagcaaa agtacgatag agaagtttgg aattgttgtt       600
     caattattgg tctgaccgat gtgagttggc ctattgtgtg agttgttcgt ttttatccta       660
     aattcttgat tccttcttag agcgaagtga acaaacaatg gttaaaattg caaaaatgat       720
     gtgcagtgtg gtgcaatggc ggtagagcga taagcttctt cgagatcggt aagccattta       780
     gacaaatgaa taccctaaac agcatcccaa agggtcatca gtattaatgt ttgaatacga       840
     cgccttctgt aggcctttct ttaacaccag ctatgttcat ggtggtgcgt taacggtggt       900
     gatgtcgtgc ggtggtattg ctatgggcgt gctaagcagc ggggtggccg gcatggcgcc       960
     ggtagtcttt cccccaaact gtccggacag gctagacgtt ttgcagacgc cgagggatac      1020
     acgaagaata cactgtcatc actccaacac aatttaggat aagctgcatc taggataagt      1080
     accacaaata aaatgtaagt acactctaag tctaaatgat cacctccact ttattttgtg      1140
     aaactggaat ttctcttttg acttgggatg gctcgttaac attcagcgtt ggttccgctc      1200
     ttctcgaacc tggttctagc tacccattaa gtatttggat cgggggatca atactcataa      1260
     gaaccgttct aaattactta actttgtctc cgagtctcat gtgccctctg cggagctggc      1320
     ccaca                                                                  1325
//
ID   Gypsy-46_AnFu-I repbase;    DNA;    INV; 5291 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5291
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2930-2930 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           773..2434
FT                 /product="Gypsy-46_AnFu-I_1p"
FT                 /note="retropepsin and reverse transcriptase
FT                 (partial)."
FT                 /translation="MLRMPGLALQPFNYEGHSESIGVEWKKWLRSFEFMLR
FT                 ACRVDDEGWKKDLLLHFLGPNVQQIFETLPDLPNINMRGPFLNVERYTPNM
FT                 TAYQEAIAKLDQFFLPKQNSTYERHLLRKIKQQSGECFDTFIMKLRLQAER
FT                 CGFGDRTEEYVKDLIIENCQSATLRRELLKQENASLDKVVSIAKIFETVSH
FT                 QEKSFSDHKDPVEQVNVVEESQNRKKRKIFEAKQTECHRCGYSGHLAKDDK
FT                 CLAKGKFCNKCGGRDHFSKKCRTKPSGNYLKRTYQRQDRYKTSNNVKTDKE
FT                 TTNAVHHVDKGNTEYVFHLTSADSNSEVCCEIGGIPLTVEIDSGSKYFLIS
FT                 QVTWEKMKSQHVEVTNQRRETTLTLKAYGGQSLPIVGVFTAAISLGIAKTT
FT                 ADFYVVGGDGKTLIGRDTATYMGVLKICVPVNAVDSKIGKLGTIKNIVLEL
FT                 PIKPDVTPFVQRYRRIPIGLEKLVDKKLDELLHQGVIEPVNEPAKWVSPVV
FT                 VVPKGNTDVRICVDMRRANEAVERENHPLPTFEDFLPQMAKAKVFSRLDIK
FT                 NAFHQVG"
FT   CDS           2627..4942
FT                 /product="Gypsy-46_AnFu-I_2p"
FT                 /note="reverse transcriptase (partial),
FT                 ribonuclease H, and integrase."
FT                 /translation="VEISKQSREITTFITRRGLFRYTRLMFGINCAPELFQ
FT                 KTMEQILSGCEGCLNYIDDIIVHGSCREEHDKRLKQVLQRLEEWNVLLNAE
FT                 KCIYGVSQMKVLGHILSADGIKPDEDKLDSIRNFRQPRSREEVRSFLGLVN
FT                 YLGKFIPDLATITHPLRQLTGQGQSFVWKSEQKAAFEKLKSLIMRPTTLGY
FT                 FDIGDRTQLIADASPVGLGAVLMQIDAKNQPRIIAFASKSLSNVERRYAQI
FT                 EKEALALVWAVERFHFYLYGRQFELITDHKPLETIFGTKSKPCARIERWVI
FT                 RLQSYKASVIYRPGKSNIADPLSRLSIVEDIEGKTFDELAEHYVSWVVSNA
FT                 SPVALTLTEIEEASEADKTIQAVRQGVDNGEWTDDAAIFKVFATELCFVRK
FT                 ILLRGNRIVMPSSLRERTLQLAHEGHPGMTIMKQRLRAKVWWPKLDMQVEG
FT                 FVRNCRGCVLVSAPPAPEPMKRRELPSAPWQHLAIDFLGPLPSGHSLLVVV
FT                 DYFSRYIEVEIMKKINSSETINRLNSIFARFGLPLSITADNGPQFSSQEFL
FT                 DFCTANNIKLISTTPYWPQQNGEVERQNRSLLKRLIISQSTNSDWTADLNK
FT                 YLLMYRSSPHSITKKTPSEMLFGYNIRDRLPSIYQPIIEPNEVADRDKEAK
FT                 ERGKAYADKRRNAKPNPICEGDDVLVKRMYKSNKLTANFGPKVYKVVKRKG
FT                 GDVLVSEKETGTEYRRHVSHLLKVPADKNVSCTSKAGDNDNAPYSNGNRTV
FT                 SPAGKSTKQKCWDQFPFGSSI"
XX
SQ   Sequence 5291 BP; 1812 A; 966 C; 1145 G; 1368 T; 0 other;
     tttggcgacg agtgataaac agatttaaca ggaaaagagc gacaatgaat acacccggta        60
     agcattgtgt agcttgcagt ggaaatagaa gaagacaaac gaatgtgagc gaagttgctt       120
     aaatgcagta aatcttgatt aaattcggaa agatgatcgt gcttatatgc agaaacgtgt       180
     ttaaatgcag aactttagct taaatgccgt ataaaacgaa acttagaaat ttgcttcaat       240
     gcagagttca aaaggaactt ctttttcgaa cacaactaac gccggaaaga ggcgggaaaa       300
     gtttggccta aatgtaaaaa ggagaatgcc aacaatggaa tgatgagctt ggcgtccgtt       360
     tcttaagaat tgcttcaatg cagtaagaaa ggaaaattac aaggtagaaa gtactcggat       420
     acgagtagtg atgaactgag aaaacatgca taaacgtgta taagtggttg cgcgatcgga       480
     tgagaacaac aagcgttgct tcaatgcaga atagaacggt tcggagaaac catgagttat       540
     acctagtgga aaaaagacat agacgcgtcg gatcgtaacg atacttcgga aacatggaag       600
     aaaaaaatgg tggaaagtta caagttggaa gccatgtttt cttgcatagt gtgtatgaga       660
     gagagaaaga gagaaagggt ggatgcgatt tcctttttat tactttaaag tatggcggta       720
     ttttccgtac agttgactta tttatttttg tcctataaat tttattgcag acatgttacg       780
     aatgccaggc cttgcgcttc agccattcaa ttatgaaggg cattcggaaa gcattggcgt       840
     agagtggaaa aagtggctca gatcattcga atttatgctt cgagcatgcc gcgttgacga       900
     cgaaggttgg aagaaagatc tgctgctaca ctttctgggc ccaaatgtgc aacaaatatt       960
     tgagacatta ccggatttac caaacatcaa catgcgagga ccatttttaa atgtggagcg      1020
     atacactccg aacatgacgg cttaccagga agcaatagcc aagttggacc aattctttct      1080
     accgaagcaa aattctacat acgaacggca cctattgcgt aaaattaaac aacaatcggg      1140
     agaatgcttc gatactttta ttatgaagtt gaggttacaa gcggaacgtt gtggatttgg      1200
     tgataggacg gaagagtacg tgaaagatct gataattgaa aattgccaat cggctacatt      1260
     acggcgagag ctactaaaac aagagaacgc tagccttgat aaagtagtaa gcatagcgaa      1320
     aatattcgaa acggttagcc accaagaaaa gtcattctct gatcacaaag accctgtaga      1380
     acaggtgaat gtagtcgaag aatctcagaa tcggaaaaag agaaagatat ttgaagccaa      1440
     acaaactgag tgtcatcgtt gtggatactc agggcattta gcaaaagacg ataaatgcct      1500
     ggcaaaaggg aaattttgta acaaatgtgg cggcagagac cacttttcta aaaagtgccg      1560
     cactaagcca tcgggaaact acctgaagag aacttatcaa agacaggatc gctacaaaac      1620
     gtcgaacaac gtaaaaacgg ataaagagac gacaaacgca gtgcaccatg ttgataaagg      1680
     aaacacggaa tatgttttcc atttaacgtc tgcagacagc aacagcgaag tgtgttgtga      1740
     aatcggtggt atccctttga cagtagaaat cgattccggt tcaaaatatt tcttgattag      1800
     ccaagtaaca tgggaaaaaa tgaaatccca gcacgttgaa gtgacaaacc aacgacggga      1860
     gaccacatta actctcaaag cgtatggtgg gcaatcttta ccaatagttg gtgtgtttac      1920
     tgctgcgatt tcccttggta tagctaaaac aactgcagat ttctatgttg tcggaggtga      1980
     tgggaaaact cttattggcc gggatactgc tacctatatg ggtgttttga aaatatgcgt      2040
     accagtgaat gcagttgata gcaaaattgg aaaattagga actatcaaaa acatcgtatt      2100
     ggaacttcca attaaaccag acgtgacacc ttttgtccaa cgttaccgcc gcataccaat      2160
     tggcctggag aaactggtag ataaaaagct cgatgaattg ctacatcaag gagttattga      2220
     gcctgttaat gaaccggcca agtgggtatc gccggtagta gtcgttccta aaggaaatac      2280
     tgacgttcgc atatgtgtag atatgcggcg cgctaatgag gcagtagaaa gggaaaatca      2340
     ccctttacca acttttgaag actttttacc tcaaatggct aaggcaaaag tcttttctcg      2400
     tctggacata aagaatgctt tccatcaggt gggttagtcg aaggctgact gatttttcga      2460
     ttttttttaa aggaaatgta actaacgtaa ttttgaatta tgaaatgaaa attttgaact      2520
     atgtaattat gaaataattt ttgaaatatt ttggaagaat atatacatat atatatatat      2580
     atggaatacc tctgtcagtg aataattctt tttgttttac ttttaggtag aaatttcgaa      2640
     acaatcccgt gaaataacca cgttcatcac acgaagaggg ttatttcgct atactagact      2700
     aatgttcgga ataaactgcg caccagaatt gtttcaaaag acaatggaac aaatattaag      2760
     cgggtgcgaa ggatgtctaa actacatcga tgatataatc gtacacggat cttgccgcga      2820
     ggaacacgat aaaagattga aacaagtact ccaacggctt gaagaatgga atgtcctcct      2880
     taacgcagag aaatgcatct atggggtgtc acaaatgaaa gtattaggac atatcctatc      2940
     cgcagacgga attaagccag acgaggataa attagactca attcgaaatt ttcggcaacc      3000
     cagatccaga gaagaagttc gaagttttct gggtctagta aattacttag ggaaatttat      3060
     accagattta gcaactatta cacacccatt acgacagttg acaggccagg gacaaagctt      3120
     cgtctggaaa tcagaacaaa aagcggcatt cgaaaaacta aaatcattaa taatgcgtcc      3180
     aacaacgctt gggtattttg atatcggaga tagaacgcag ttaatcgcag acgcaagtcc      3240
     agtgggacta ggagcggtgt taatgcaaat agatgctaaa aaccaaccaa gaattatagc      3300
     atttgctagc aaaagtttgt caaacgtaga gaggcgatac gcgcaaatcg aaaaagaggc      3360
     cctagctctt gtatgggctg tagaaagatt ccatttttat ctgtacggtc gtcaatttga      3420
     attgattaca gatcacaagc cactagaaac tatattcggt actaaatcta agccatgtgc      3480
     aagaattgaa cgatgggtta ttcgtctgca atcttacaaa gcttcagtaa tttatagacc      3540
     aggtaaatcc aatatcgctg accctctctc acgactctca atagtagaag atatagaagg      3600
     aaaaaccttt gatgaacttg ctgagcacta tgtttcatgg gtagtctcaa atgcatcacc      3660
     tgtggcctta acattaactg aaatagaaga agcttcagaa gcggacaaaa caattcaagc      3720
     agttcgccaa ggcgtagaca acggtgaatg gacagatgat gctgctatat tcaaagtatt      3780
     tgctacagaa ttgtgttttg tgaggaaaat actgttgcga ggaaacagaa ttgttatgcc      3840
     gtcttcgttg cgagagcgga ctttacagct ggctcatgag ggtcatccag gcatgaccat      3900
     catgaaacaa cggctgcgag ccaaagtatg gtggccaaaa ttggacatgc aggtagaagg      3960
     ttttgttagg aattgtcgtg gatgtgtgtt agtctccgca ccacctgcac cagagccaat      4020
     gaaacgcaga gaactaccat cggcaccttg gcaacaccta gcaattgatt tccttggacc      4080
     gttaccatca ggtcactcac tattagtagt ggttgattac ttcagtcggt atatagaggt      4140
     agaaataatg aagaagataa attctagtga gactataaac cgactaaact caatttttgc      4200
     tcgatttggc ctaccgctgt ctattactgc ggataacggg ccgcaatttt ccagtcaaga      4260
     atttcttgat ttttgtactg ccaacaatat taaactaatc agcactacac cttactggcc      4320
     acaacaaaat ggagaagttg agagacaaaa ccgatcttta cttaaacggc taattataag      4380
     ccaatctacg aattccgatt ggactgctga tttaaacaaa tatttgctaa tgtatcgttc      4440
     ctcacctcat tcgattacta agaaaacacc atcagaaatg ctcttcggat ataatatcag      4500
     agatcgatta ccctccattt atcaaccaat aatcgaaccg aatgaagtag ccgaccgaga      4560
     taaggaggca aaagaaagag gtaaagcata cgcagataaa cgaaggaacg ctaaacctaa      4620
     tcctatatgc gagggagacg atgttctcgt taaaagaatg tataagtcta acaagctcac      4680
     tgcaaatttt ggtccaaaag tttacaaagt agtaaaaagg aaaggaggag atgtattagt      4740
     atcagaaaaa gaaacaggaa cggaataccg tagacatgtt tctcatttac tgaaagtccc      4800
     tgctgataaa aatgtttcct gtacatcaaa agcaggagat aacgacaacg caccttacag      4860
     caacggaaat agaacagtta gtcctgcagg taaatcaacc aagcaaaagt gttgggacca      4920
     attccctttc ggtagctcaa tttaaacgtc tcgttcgatg gtgttcgttt ttagattcct      4980
     tatattaatt tctccactat cgtagctaac cgatcgtact ataccgatcc tactcgaaac      5040
     ttcccgaatc cgacggtaat gtttcctact tatcttaact ctattgtaac cttggttagg      5100
     atttctcgaa ataagcttgc tataattctc aactaacaaa aaggtcataa gtgactcatc      5160
     agaggcagat gaaccaagat gcaaacgaat ccgacagaaa cctcattact tgcaagacta      5220
     tgtatcagca gttggaaatg cgttagtcca aaacaagtag agcgtcatct ttaaaaaaaa      5280
     gggaaagtga a                                                           5291
//
ID   Gypsy-46_AnFu-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-129
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2858-2858 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 129 BP; 43 A; 20 C; 31 G; 35 T; 0 other;
     tgtagtgttg tatcttagtt atagacacct tggcatgtta gtagggaatt gacaaacgag        60
     cgaacaataa atgagacagt tgattgtgga tcacgaagct gacaagacgt gcttattcaa       120
     gacactaca                                                               129
//
ID   Gypsy-46_CQ-I repbase;    DNA;    INV; 7570 BP.
XX
AC   AAWU01015436;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_CQ_;
KW   Gypsy-46_CQ-LTR; Gypsy-46_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7570
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 471-471 (2011).
XX
DR   GenBank; AAWU01015436; Positions    9338    1769.
XX
CC   Positions [5889-6365] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1291..3543
FT                 /product="Gypsy-46_CQ-I_1p"
FT                 /translation="MELQKLYYNMDVSHLAIDEIEHELYVRKISFKSNELE
FT                 STKRRRLKEVMKNERESNSFKACNSWRTLPEEITLIKSKLLVITGLLENPK
FT                 TPALQRIKLKTKLIHYRVRIFLATKAFSAHKYASQLETLGKQASKIYVTHF
FT                 PDETGSEEVPESQDKLDEDVVKALEEVRNEIEIMNESVVGVELDSEKNLES
FT                 VGSEKTADFQKEIQEVEVRKKSLIEMLEQFETTENLEGNKVIENLKSFVQE
FT                 TSEQQKAMREQQIEEENRKLKEIEENMNRKIRLEQLLVKLNNHLKIAESKP
FT                 TKQIDFPKKTDPGENSKNRQFDSEFDFDLDCFSQSSSDDSSSKSSSDISTA
FT                 AKRKYLKRVKKKRSGRGKSRSKVKGRKHQKQKVSFSGTSDSVQSTDSESSS
FT                 SSSSSSTSSTSSSSSDSSSDSRSARRKNKKHKKSKKKHHHLKRIPVSEWRL
FT                 KYDGKDQGRKLSEFLKEVKMRQKGEKITDKQLFQSALHLFSGRAKDWFMEG
FT                 FENKDFRKWSELKKELKREFLPPDLDFQTEVQASNRRQARGEKFGDYFRDM
FT                 QKLFQSMTKPMSDSRKFEIIWRNMRYDYKNALTAARIKSLSKLKKYGRILD
FT                 ENNCNLFQKPVDASSRPKQQYVNEIITSGNPKQKQGSNNSYNNSKVFSKTK
FT                 PKAGGKEEEDKFERSNQEKGGKFKPRDKEEADAMEGTAAGTMQALVDRYKR
FT                 PPLGTCYNCGRHGHHYSDCSDKRGNFCRICGFPDVHTTKCLFCQKNGQNSA
FT                 "
FT   CDS           join(3507..5798,5802..6752)
FT                 /product="Gypsy-46_CQ-I_2p"
FT                 /translation="MPILSKKRTEFSLKRQVGSAAENPPTSEIVTQEMLSS
FT                 GFRMFSDDDYCSEKNVEELFIRLEGDNRPFAKVWVLGRELIGLLDSGAQRT
FT                 VLGYGCKKLLREWKLKIFPAEIALKTASGSQVEVEGCVHLPVTFNNENKII
FT                 SALVAPKLKQKLILGYDDFWKAFRIQPGVQSIGCIEKVDLTNISRVDEICT
FT                 EDEQEEEIVEILNDLQKTQLESIKGLFKVAVDGETLETTPLITHKIDLKPE
FT                 FVNAPPVRINPYPTSPELQKKINHELDNMIKLQVIEPSRSDWSLSTVPVIK
FT                 PTGEVRLCLDARRLNDRTVRDAYPLPHQDRILSRLGSCKFLSTIDLTKAFL
FT                 QIPLDPASRKYTAFSVLERGLFQFCRLPFGLVNSPATLARLMDGVLGFGEL
FT                 EPNVFVYLDDIVVVSETFEAHLSLLSEVARRLKLANLSININKSKFCVSEL
FT                 PYLGYILTPEGLRPNPERIEAILNYERPNSLRSLRRFLGMANYYRRFIPHF
FT                 SDMSAALTDLLKKKPKSLIWNPKAETSFLQLKESLIAAPVLANPNFDLPFQ
FT                 IQCDASDTAIAAILTQEHFDGERVVAYFSQKLSPAQQAYAASEKEGLAVLS
FT                 AIEKFRPYIEGTHFIVVTDASALTHIMKGKWRTSSRLSRWSIELQGYDLEI
FT                 RHRRGKDNVIPDALSRSLEISLLEEDGDAWYSMMYNKVLASPDEHIDFKVE
FT                 EGKLFKFIPAQTEVLDYRFEWKLCVPERMREDILRKEHEESLHVGYEKLLE
FT                 KLRARYFWPKLAFARKYIEKCRICKECKPTNTSQHPTMGTARLATKPFQIL
FT                 AIDFIQSLPRSKTGNMHLLVLLDLFSKWTVLVPVKKICASVVVKILEEQWF
FT                 RRYSVPEILISDNATSFHSNEFKDFLQKYQVQHWANSRHHSQANPVERLNR
FT                 SINALIRTYVKQDQRLWDSKISQVEYTINNTWHSSTGFTPYKILYGHEIIS
FT                 TGEEHRRDADASEISDNERIETKLKVDRNIYDLVYKNLVKAHEKSERAYNL
FT                 RFRKPAPVYQVGQKVFKRNFALSSAGDAYNAKLGPMYVPCTIVSRRGTSSY
FT                 ELIDEHGKNLGIFSAADLKPGNPE"
XX
SQ   Sequence 7570 BP; 2414 A; 1436 C; 1733 G; 1987 T; 0 other;
     gggcccgtaa ttaccaattt gagtccacga tagcacgttc gttggaccaa aagcccacgc        60
     ggtcaagcac cttgcccaga agggcagacc ggactctaga agctgcgcga acagcgccgt       120
     cgtcggataa cctcgtcccg ccgctggcag gacgaccgac gcatcccaag ctgttggtgg       180
     atcgcttgcc tagggaaacc gcatgtacct cggcgacaaa ggcgatcacc cacgaggtcc       240
     aggtagcagc tcgacgaccg gcgattggcg acagcacgta cgccgccggt gacacccaac       300
     aacgccagtt tcggccccac cgtagccgaa agaccgccac gagttccagc aagcggcctc       360
     gagaaggcca agttcagccg acgacgaagc gcacgtggca tcgtgcaccg ttcaccacaa       420
     ctccagcacc aggccatcca gatcgccgag aacggctgac gtcgcaccgc acgtggcctc       480
     ccaccggcca accgcagaag ccgccacctt caagaagcct ccagcatgcc ccccgcaaca       540
     cacacacaca cgcccacagt gagtaaaata aaaaccgtct aaaagtgatt attacagggt       600
     ttgtcctttt gattatccga gccgccttgc aaattagagc tccttgcttt gaaaaccacg       660
     ccagtcgcgc aaaagaggcc ccgagcccac ccctgtccgg tcgtggctct aagaccaacc       720
     ggcaggggcg tcttaagggc ctcctggccc agagggtacg ttgtcccgta gtaataaatg       780
     gcgcccaact aaagataatt aaaggtaatc aagaggtcaa acacagttcg cagcaagtgt       840
     gctaggaggt ttaggtattt tttttttacg caattttttg aagactctgt tgagggaatg       900
     ctgtgttggc gcggtttcat caacatttgc tttgtttcaa tagttgtgga tgattcaagg       960
     ctgattgtta gtgcgcgaac gttattgaaa gttctcattg gttgaattga acagcaaata      1020
     ccgggagaat tacaagaaaa gttgatgttt tttttataat tactgggtct tgatacacca      1080
     actaaacaga atattgaatt attcaggatt tactgtgttt ttttttatat ttgtgcttag      1140
     aatgaagctc caagaaaatt tcatgttgta gagacatttt ttttctattt ttgtatattt      1200
     ttgtttcgct tttgaatatt attattaatc aagcattctt tctctcttaa atttctaggt      1260
     ttacaatttt gaatatatta aaagatcaac atggaattac aaaagttata ttacaatatg      1320
     gatgtgtctc atttggcaat tgatgaaatt gagcatgaat tgtatgtacg gaaaatttcg      1380
     tttaaatcga atgaacttga gagtaccaag cgaagaagat tgaaggaagt aatgaaaaat      1440
     gaaagggaat caaacagttt caaagcttgc aactcgtgga gaacacttcc cgaggaaatt      1500
     actttgataa aatcaaaact tcttgtcata acaggattat tggaaaatcc taaaacaccg      1560
     gctcttcaaa gaataaaatt gaaaacaaaa ttaattcatt accgagtgcg tatttttctg      1620
     gcaacaaaag ctttcagcgc tcataaatat gcttcgcaac tagaaacttt gggtaaacag      1680
     gcaagtaaaa tttacgttac acactttccg gacgaaacag gatcggaaga ggttccggag      1740
     agccaggaca agctcgatga ggatgtggtg aaagccctgg aagaggtacg taacgagatc      1800
     gagatcatga atgaatctgt tgtgggagtg gaattagaca gtgaaaagaa tttggaatcg      1860
     gttggaagtg agaagacagc ggattttcaa aaagagattc aggaagttga agttcgcaag      1920
     aaaagtctga ttgaaatgct tgaacagttt gaaacaacgg aaaatttgga aggaaataag      1980
     gtgattgaaa atttgaagtc atttgtacaa gaaacttctg aacaacaaaa agctatgcgg      2040
     gaacaacaaa ttgaagaaga aaatcgcaaa cttaaggaga ttgaggaaaa catgaacaga      2100
     aaaattaggt tggaacaact tttggtaaaa cttaataatc atttaaaaat tgctgagtca      2160
     aaaccgacca aacaaattga ttttccaaag aaaactgatc ctggcgaaaa ttcaaaaaat      2220
     cgtcagtttg attcggaatt cgattttgat ttggactgct tttcacagtc ttcgagtgac      2280
     gacagttcgt ccaagagtag ctcagatatc agtactgccg cgaaacggaa gtacctgaaa      2340
     cgagtgaaga agaagaggag cggaagggga aagtccaggt ctaaagtaaa gggaagaaaa      2400
     caccaaaagc aaaaagttag tttttctggg acaagtgata gtgttcagtc tactgatagt      2460
     gaatcatcta gctcttcaag ctcttccagc acttcaagca cttctagttc gagttctgat      2520
     tcttcgtcag actcgagatc agctagaaga aagaacaaaa agcataagaa atccaagaag      2580
     aaacaccatc atcttaaacg gatccctgtt tcggaatgga gactaaaata cgacggaaaa      2640
     gatcaagggc ggaagctttc agaatttttg aaggaagtta agatgcgtca aaagggagag      2700
     aaaattacgg acaagcagtt gttccaaagt gcacttcatt tattctctgg tcgtgctaag      2760
     gactggttta tggagggttt tgaaaacaag gattttcgaa aatggtcgga actaaaaaag      2820
     gagcttaaac gtgaattttt gccaccagat ttggatttcc agacagaagt tcaggcgtcc      2880
     aatcgacgac aagctcgggg agagaaattt ggtgattatt ttcgtgatat gcagaaatta      2940
     tttcaatcta tgaccaaacc gatgtcggac agtcgtaaat ttgagattat ttggcgcaac      3000
     atgagatatg attataaaaa tgctctcacc gcagcaagaa ttaaatcttt gtctaaatta      3060
     aagaaatacg gtcgtattct cgacgaaaat aactgtaact tgtttcaaaa accggtcgat      3120
     gcttcatccc gaccaaaaca acaatatgtt aatgagatca taacttctgg aaacccgaaa      3180
     caaaagcaag gttccaacaa ttcttacaac aattccaaag tctttagcaa aacaaaaccg      3240
     aaagcgggtg gaaaagagga agaagacaag ttcgagcgct ctaaccagga aaagggagga      3300
     aagtttaaac caagggataa agaagaagct gatgcaatgg aagggacagc tgcaggcacg      3360
     atgcaagcat tggttgaccg atacaagcgt ccaccgctag gaacatgcta taattgtggt      3420
     cgtcatgggc atcattattc agattgttcg gacaagcgtg gaaatttttg tcgtatttgt      3480
     ggttttcctg atgtacacac caccaaatgc ctattctgtc aaaaaaacgg acagaattca      3540
     gcctgaagag gcaggttgga tctgccgctg aaaatcctcc tacttccgag atagtcacac      3600
     aagagatgtt gtcaagtggg tttagaatgt tttcagatga cgattattgc tcggagaaaa      3660
     atgtagagga attgtttatc agactggagg gggataatcg gccatttgca aaagtatggg      3720
     ttctaggaag agaattgatt gggctattgg atagtggagc gcaaaggaca gtgttagggt      3780
     atgggtgcaa aaagcttttg agggagtgga aattaaaaat tttccccgcg gagatcgcct      3840
     tgaagactgc ttcgggatcg caagtggagg tggaaggttg cgttcattta cctgtaacgt      3900
     tcaacaatga aaacaagatt atttcagccc tcgtggcacc aaaattgaaa caaaagttga      3960
     ttttaggcta tgatgacttc tggaaggcgt tcagaattca gcccggagtc caatcaatag      4020
     gttgtattga aaaggtagat ttaacaaata tttcgagggt tgatgaaatt tgcacggaag      4080
     acgaacaaga agaggagata gtcgagattc tcaatgactt gcaaaagacc caattagagt      4140
     caattaaagg gttgtttaaa gttgcagttg atggggagac acttgaaact actcctctga      4200
     tcacgcacaa aattgatctc aaaccagaat ttgtcaatgc accacctgtc agaataaacc      4260
     catatccaac atcacctgaa ctccaaaaga agattaatca cgaacttgat aatatgatta      4320
     aactgcaagt gatcgagcct agtaggagtg actggtcttt aagcacagtg ccggtaatca      4380
     aacctacggg agaagtgcgt ctgtgtttgg acgcccgtcg tttgaatgat cggacagtga      4440
     gagacgctta ccccctccca caccaagatc ggatattgag cagactgggt tcatgtaaat      4500
     tcttatcaac gattgattta acaaaagcat ttctacaaat accactggac ccagcctcgc      4560
     gaaaatatac tgctttctcg gtgttggaac ggggattgtt tcagttctgc cggctcccgt      4620
     tcggtctagt aaatagccca gcgaccttgg ctcgcttgat ggacggagtg ctggggtttg      4680
     gggaactgga accgaacgta ttcgtttacc tcgacgatat cgtcgtggta agtgaaacgt      4740
     tcgaagcgca tctctcactg ctgtccgaag tagcacgacg tttgaaacta gctaatcttt      4800
     cgataaatat caacaagtct aaattttgtg tgagtgagct tccttatctg ggttacatac      4860
     tcacaccaga aggattgcgt cccaacccag agagaataga ggcaattttg aactacgagc      4920
     gaccaaactc tctgcgctca ttgcggcgat ttttgggaat ggcgaattat tatcggcgct      4980
     ttattcccca tttctctgac atgtcagcag cattaaccga tcttctcaag aagaagccca      5040
     aatcccttat ttggaaccca aaggcggaaa catcgttttt gcaattaaaa gagagcctta      5100
     tcgcagcacc tgtcctcgcg aacccaaatt ttgacttgcc ctttcagatt caatgtgacg      5160
     cgagtgatac tgcgatagcg gcgattctca cacaagaaca cttcgatgga gagagagtgg      5220
     tagcttattt ttctcaaaag ctctctcccg cgcaacaagc ttacgccgca tctgaaaaag      5280
     aaggtttggc tgtgttatca gcaattgaaa aatttcgtcc atatattgaa ggaacacatt      5340
     ttattgtcgt gacggatgcc tcagcactca cgcacataat gaaaggaaag tggcgaacct      5400
     catctagatt gagtcgatgg agcatagaat tacagggtta tgatctggaa attcgacacc      5460
     ggcgcggaaa ggacaatgtt atccctgatg cattgtcgcg ctcgttggag atttctttgc      5520
     tagaagagga tggagacgca tggtattcca tgatgtacaa caaagtactt gcgtctccag      5580
     atgaacatat tgacttcaaa gtagaggagg gaaagctttt taagttcatt cctgcgcaaa      5640
     ccgaagtgct cgattataga ttcgagtgga aattatgcgt accagagagg atgagagagg      5700
     atatcctacg aaaagagcac gaggagtctt tgcacgttgg atatgagaaa cttttggaga      5760
     aattgagagc gagatatttt tggccaaagt tagcatttta ggcccgtaaa tacatagaaa      5820
     aatgtagaat ttgtaaggaa tgcaaaccca caaatacatc acaacaccca acaatgggga      5880
     ccgcgcgttt agctacaaag ccttttcaaa tacttgcaat tgattttatc cagtcgcttc      5940
     caaggtctaa aacgggaaac atgcacttac tggttctatt agatttgttc tcgaagtgga      6000
     ctgttttggt tcccgtgaaa aaaatctgtg ccagtgtggt tgtaaaaata cttgaggaac      6060
     aatggtttcg tcgctactca gtgcccgaga ttctgataag cgataatgcg accagcttcc      6120
     acagtaacga atttaaagat tttttgcaaa agtatcaggt gcagcattgg gccaactcca      6180
     gacatcatag tcaggccaat cctgttgagc gcctgaaccg aagcattaat gctttaattc      6240
     gaacgtatgt caaacaagac cagcgtcttt gggacagcaa gatttcacaa gttgagtaca      6300
     cgatcaataa cacgtggcac tcttctacgg gatttacgcc gtataaaata ttgtatgggc      6360
     atgaaataat ttccacagga gaggagcatc ggcgagatgc agatgcgtcc gaaatatctg      6420
     ataatgaaag aattgaaaca aagttaaaag ttgatcgtaa tatttatgat ttggtttaca      6480
     aaaacctagt aaaagcacac gagaagagcg aaagagcgta caatcttcgg ttccgcaagc      6540
     ctgccccggt gtaccaggtg ggacagaagg tttttaagag gaattttgca ctttcttcgg      6600
     ctggggacgc ctacaacgcc aaactgggtc cgatgtacgt tccatgtaca atcgtgtcaa      6660
     ggcggggcac cagttcgtat gaattgattg atgagcacgg taaaaatttg ggtattttct      6720
     cggcagcaga tctcaaaccg ggaaatccag agtaagaaga gcgaaaagaa tgcattttaa      6780
     aacaattttt gcgttgtttt gttgaaaaat gtaacatttt acaagtttta gagcgttttt      6840
     tgtgctattg tttagaacca cgttgtgtca gcaatagttg gttaaaaatg tctgatcatg      6900
     atcaatcctt ttgtctgaaa aagaaataat tagaaagaga aagataatgc aagtttgatg      6960
     attgtttttt gtttgaaaag ccttttctgg atgaatgtct cagtggaaag gagaatataa      7020
     ttataacaat gtatgatgaa ttctagctag gcagaagtaa gatacaagca aaacagatta      7080
     atgataacaa taaaggaaaa tgaaatgctt gaaattgctg tgcgtagaaa tttttgacta      7140
     gtcatttcta ccctgctgtg caaagatatt ccaaattgat taactgagta tacaagaaaa      7200
     cccgatttcc tatttccatg ttaaaaggaa aagcttggaa cgcattcgaa tcacaacatt      7260
     gggaaaattt gcggtagttc ctgagagaga acgatcttct cttcctcaga atggttttct      7320
     gttctggaat agtgggagta gaaaagatct agtaattgtt ttgaaaagta aattcgttgg      7380
     aaaatatatt ttcttattat aagattaaac tatttgctga ttcaacgaac gaatgtcaat      7440
     ttttggtaaa gcctagtata tcgttacctg gctgcttccc tgagtcagcc ttgattcagt      7500
     tgcagctgtg taaaaaaatt aataaatatt tataatattt ttaatttttt tggggaggag      7560
     tagatggtag                                                             7570
//
ID   Gypsy-46_CQ-LTR repbase;    DNA;    INV; 556 BP.
XX
AC   AAWU01015436;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_CQ_;
KW   Gypsy-46_CQ-I; Gypsy-46_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-556
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 472-472 (2011).
XX
DR   GenBank; AAWU01015436; Positions    1768    1213.
XX
SQ   Sequence 556 BP; 184 A; 96 C; 127 G; 149 T; 0 other;
     tgttaccgtt acgacatcag caatccattt tgctaaccat cgcttatggt tgcaaatagg        60
     agtagggttt attgctataa attaacgatt taacttgtta gtagggcttt aagaattagg       120
     ggtgtttgtg ttgttttgtt taaaatgatt tgtcattcgt aaaaattaaa aggttaattc       180
     acaaacatat tacaacagag cacagtctag ggaaaaagat caaataaagc acacgttact       240
     cgcgaaccga agggaaccat atttgtaaaa acactataac agcacacacg ttgggggggt       300
     atacatcgtg acccaaaaag ggagattgcc agttggatta agggcatgca tgggagaagg       360
     aaaaagggaa taaaagaggt tttgtggcga gagcgagcca acaattgatc ttgggttcac       420
     tgattaggcc ttttccacac caactactga tcgaaccaca tcgtcatccc gtcatcaagt       480
     gatcaagtgc aaatctatac ctactgcgtt gtgagaagtg gaaaagttgc ttccacggga       540
     gaaagcaatt gtatca                                                       556
//
ID   Gypsy-46_DEl-I repbase;    DNA;    INV; 5688 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   24-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_DEl-I.
XX
NM   Gypsy-46_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5688
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 487-487 (2012).
XX
RN   [2]
RP   1-5688
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..2333
FT                 /product="Gypsy-46_DEl-I_1p"
FT                 /translation="MPLHHSTENLTAASNDDTTVCILCARPINVEDLKAVS
FT                 PCNHKFHRQCITDHLHVTNTCPTCNNICTVQQLSVSNNNLLAELTDAEQRS
FT                 HAASAPSEIDPGEGSSNQIVNRGRGRGRVNSRRGRNTVQPRTIVTRSQLPL
FT                 NAGQQLDRTANTDSILDSSKAESLEEIGRAVQAAMQTQQEKLMHXLTVFIQ
FT                 TQLANMQVGNNGQFPSGRQVNNISEXSGFTAGQSQPVEEQNSPNVSTNISP
FT                 VNQQLSRISGRFHNSVQPEKVPNIIQSWHIKFDGAKDGLQTEDFLYRVNAL
FT                 AQQNLNGDHQLLCDHLHLFFIGRASEWYWKYHKASEKVTWNEFCKEFREKF
FT                 RDIDTDLDIWESINNRRQTDREPFEEYQICIEKLVARLSTPISEQSLVQLL
FT                 IRHSKPSLRYELMHLSIDSLASLRKEIRTHEQFCKQNRQQPGRNNFSARPN
FT                 VSELDPDSEDTVLDEVSALQRREMRCWNCDKIGHRFDDCLESISIFCFGCG
FT                 AKNTKKPNCQKCNPSENHQRDVSAKNHSTHPKN"
FT   CDS           2273..5617
FT                 /product="Gypsy-46_DEl-I_2p"
FT                 /translation="PIGKPPTGCVGQKPLDASEKLKSDCGTQTDPIESSDL
FT                 NTRPNHLKPYHVREAQYTAARQRIFGDISSCSISQKPGRSTSRVRQFWKTV
FT                 RQSRKRLVAAVFLNSDNRLYTEIDISDKRYVALLDSGATISCIGGNAAKDL
FT                 SQHPRMRKCSGQIKTANDASCSVVGRLILDITYRNRTNVVEFFVIPELKQD
FT                 IYLGIDFWRDFGLLNKITEETGSVSELDVGREDEVVDIPKIHSLSIEQRTR
FT                 LEAVIRQLPSYESEGLGRTQMLEHSIDVGGAKPVKQRHWPISPAKEKIMFA
FT                 EIENMLALDVIEESRSPWSSNCVLVKRGEKVRLCLDSREVNKLTVKDAYPL
FT                 PHVDGILSRLPPARYITGLDMKHAFWQIPLEEKSRQCTAFTIPNRPLYQYK
FT                 VMPFGLCNAAQTLCRLMDLVIPASLRTRVFVYLDDLLILSDDFESHMKLLE
FT                 EVARYLRKANLTINIAKSNFCMTEIKYLGFIIGHGQLKVDPSKVSAINEFP
FT                 IPTTVKQLRRFLGLAGWYRRFVDNYASITVPLTELLKKNKEFSWNREAEEA
FT                 FSLLKSKLTSSPVLRTPDFNRKFVLLCDASLYGLGCVLAQEYEDGVEFPVA
FT                 YMSEKLSKAQRNYSVTELELLAVIKGINKFRAYIEGQEFCVVTDHASLQWL
FT                 MKQKDLSGRLARWSIQLQRFSFTIKHRSGSQNVVADALSRCEEANVCEVTD
FT                 SGPVIDLLSKEFDSEDYLELVNRIKENQARLPDLKVVDKFVYKRTEPSKGD
FT                 ALQDAESWKLWVPTLLREHVMYRAHDAPDSAHIGMTKMIEKLKRYLFWPGM
FT                 VTQIRDYVANCSICKSTKSPNQILRPPMGNPTTSERPFQKLYMDLLGPYPR
FT                 SKSGNIGLLIIVDHCTKFHFLHPLRKFTSDKICDFLEKYVFFTFGVPESIL
FT                 TDNGSQFKSGYYKAFLTRFGVAPVCTAIHSPQANASERVNRSVLAAIRAYI
FT                 GTDHTNWDRNIDEISASLRASTHRSTGYSPYFLCFGQNMVMNGKDYELLRK
FT                 LNLIRDDTALKTSDLMQLTRMQAQEKVREAHAANAKVYDLRSRSVRFKVGD
FT                 TVYARSFAQSNAAKKFNNKLAPVFIKAKVWKKISHIYYELASEDDKPLGVY
FT                 HLKDIRS"
XX
SQ   Sequence 5688 BP; 1771 A; 1139 C; 1314 G; 1460 T; 4 other;
     gaaaatggcg cccaaacgtg gggctagaaa ccgattaccg ttttgagaaa ttaaagagaa        60
     attaaacact caggtagtaa acaagtccta ggagccgaaa tcgcaagtta tgtgcaggat       120
     ccttaggagg tactagccat caatattgct caattattca tccaattagc ttttgaagtt       180
     ttaataattt gaaatatttt aaatatgtta atccgctgaa acctattttt gtatttgagg       240
     ttagccataa ctgttttata aagtcgttgc ctggaatagc gactgcaatt cgagtcctta       300
     cggattgagg cgaccggaac gatcttattc acagggttaa taattaagtc agaaattaat       360
     ccggtagact aaagttttga ttcgatatta gagggaagcg aattcggaaa ttcgtacttt       420
     ggaactgcga ttgaaaatca agtcattatg gtatcatcga ccaaggcgaa ccaatcgtag       480
     aaaactagtt tcgttgaaat tgtttagttc acctggcgtc agggcacagt acgcgtactt       540
     aggagtagca agtcatcgga ggaacttcga tacttgacca gtgcagcgaa tacgaatccc       600
     ggaagccata tccatcaagc aaatattagt atagagtatt tttaggagat aataccaagc       660
     atgttcgaga gaactgacaa acagctcgtt ggaaagcaaa gaccaatttt gaagaaactt       720
     aaaaactata taacattttg tggaaaatgc cacttcatca cagtacggag aacttgacag       780
     ccgcgtcaaa tgatgacaca acggtttgca ttttatgtgc tcgaccaatt aacgtggagg       840
     acctgaaagc agtttctcca tgtaatcata aattccaccg tcaatgcatc acggatcact       900
     tacatgtaac aaatacttgc cccacgtgta ataacatatg tactgtgcaa cagttatcgg       960
     tatcaaataa taatttgtta gctgagttga cagacgcaga gcaaagatca cacgctgcca      1020
     gtgcgccgtc tgaaatcgat cctggcgaag gcagtagtaa ccaaatcgtg aatcgaggcc      1080
     gaggccgagg tagagtcaac tcgcgaagag gcagaaatac tgtgcaaccc agaaccattg      1140
     ttactagatc gcagctacct cttaatgcag gacaacaact agacagaacc gcgaacaccg      1200
     attccatatt ggattcttcg aaagcagaga gtttggaaga gataggaagg gcagtgcaag      1260
     cggcaatgca gactcaacag gaaaaactta tgcacgamct gacagttttt attcagacac      1320
     agttggcgaa catgcaagta ggcaacaatg gacagttccc cagcggaaga caggtcaaca      1380
     atatttctga amactcaggg ttcacagctg gtcaatcaca gccagtggag gagcagaatt      1440
     cgcccaacgt tagcacaaac atcagtccgg taaatcagca gcttagtagg atatcaggca      1500
     gattccacaa ttcggttcag ccggagaaag tgcctaatat tattcagagt tggcacatca      1560
     aatttgatgg ggccaaagat ggattgcaaa cggaagactt tttgtacaga gttaatgctt      1620
     tggcwcaaca gaatttaaat ggtgatcatc agttattatg cgaccacctg cacctatttt      1680
     ttataggcag ggctagcgag tggtactgga aataccacaa ggccagtgaa aaggtaactt      1740
     ggaatgagtt ttgcaaagaa tttagggaaa agtttaggga catagatacg gacttagata      1800
     tatgggaatc aattaacaac aggcgtcaga cagataggga accatttgag gaatatcaaa      1860
     tttgtatcga aaaacttgtg gcgcgcttga gcaccccaat ttctgaacag tctctggtcc      1920
     aacttcttat tcgacactcg aaaccctctc ttaggtacga gttaatgcac ttaagtatcg      1980
     actccttagc tagcttaaga aaagaaattc gaacgcacga gcagttttgt aaacagaata      2040
     gacagcagcc aggaaggaat aatttttccg cgcgtccgaa tgtttctgaa cttgatccag      2100
     attctgagga cacagtgcta gatgaagttt cagctttgca gcgtagagaa atgagatgct      2160
     ggaactgcga caagattggg catcgctttg acgactgtct tgagtcaatc agtatatttt      2220
     gctttggatg cggtgccaaa aacaccaaga agccaaattg tcaaaagtgt aacccatcgg      2280
     aaaaccacca acgggatgtg tcggccaaaa accactcgac gcatccgaaa aattaaaatc      2340
     agactgtggt acgcagaccg atccaattga aagttcggat ctgaacactc gacctaatca      2400
     tctcaaacct taccatgtta gagaagcaca atatacagca gctagacaga gaatttttgg      2460
     agacattagc agctgtagca tttctcagaa acccggacgt tcaacttcac gagtacgaca      2520
     attttggaaa acggtgcgac aaagtcggaa aaggttggtc gcagcagttt tccttaactc      2580
     cgataaccgt ttatataccg aaatagatat atctgataag cgttacgtag ctttgctgga      2640
     ttcaggtgcg acgattagtt gtattggggg caacgctgcg aaagatttat cccagcaccc      2700
     gaggatgcgt aaatgttcag gccaaattaa gacagctaat gatgcatcgt gttcagtcgt      2760
     gggcagactt attttggata tcacatatcg taatcgcact aatgtagttg agttcttcgt      2820
     cataccagag ctcaagcaag atatttatct tggtattgat ttctggcgcg atttcggatt      2880
     gctgaacaaa ataacggaag aaactgggtc ggttagcgaa ctcgatgtag ggcgagaaga      2940
     cgaggtggtt gatatcccga aaatacattc cctttcaata gaacaacgaa caaggttaga      3000
     agcagtaata cgccaactcc cttcttacga gtcggaggga ttagggcgga cgcagatgct      3060
     agagcattcc atcgatgttg gcggggcgaa gccggtaaag cagcgtcact ggccgatctc      3120
     acctgcaaag gagaaaatta tgtttgcaga aatagaaaac atgttagcat tagacgtgat      3180
     agaggaatcc cgaagccctt ggagcagcaa ctgtgtacta gttaaacgag gagaaaaggt      3240
     tcggttatgt ttagattcga gagaagtgaa taagctgact gtaaaggatg cttatcctct      3300
     tcctcacgta gacggaatcc taagcagact gccaccagcg cgttacatca ccggacttga      3360
     catgaagcac gcgttctggc agatcccgct cgaggaaaag tcaaggcagt gcacagcgtt      3420
     tacgataccc aataggcctt tgtatcagta caaagtaatg cccttcgggc tttgtaacgc      3480
     cgcgcaaaca ctctgcaggt taatggactt agtaatacca gctagtctgc gcactcgggt      3540
     gtttgtatac ttagatgatt tgttaatttt gtctgatgat tttgagtcac acatgaaatt      3600
     gctagaagag gtcgctaggt atttgcgaaa ggctaattta acgattaaca tagcaaaatc      3660
     aaatttttgt atgaccgaga tcaagtattt agggttcatc atagggcacg gacagcttaa      3720
     agtcgatcca agtaaagtta gtgccattaa cgagtttcca attccgacca cagtcaagca      3780
     gctccgtaga tttcttgggc ttgccggctg gtacaggcgt tttgtagata attacgcttc      3840
     tatcaccgtt cctttgactg agttacttaa gaaaaacaaa gagtttagct ggaatcgcga      3900
     ggcagaagag gcgtttagtt tacttaagtc gaagttaacg tcatccccgg tgttgagaac      3960
     cccagatttt aatagaaagt ttgttttgct ttgtgatgca agtctttatg gtcttgggtg      4020
     tgtattggcc caagaatatg aagacggagt tgaatttcca gttgcatata tgtcagaaaa      4080
     attgtcaaaa gcacagcgaa attactccgt tactgaactt gagttgctag ccgttatcaa      4140
     gggtataaat aagtttaggg cctatataga agggcaagag ttttgcgtag tgacagatca      4200
     tgcttccttg cagtggctta tgaagcagaa agacctgtca ggacgcctag caaggtggtc      4260
     aattcaattg cagagatttt cgtttacgat taagcaccga agtgggtcac agaacgtagt      4320
     ggctgacgca ttgtcgagat gcgaagaagc taacgtttgc gaagtcactg actcgggacc      4380
     agtaattgat ttgttatcta aggaattcga ttcggaggac tatcttgagc tagtcaaccg      4440
     cataaaggaa aatcaggcta ggttacccga cctaaaagtg gtagataagt ttgtgtacaa      4500
     gcgaactgag ccatctaagg gggatgcact ccaagacgca gaatcctgga aactctgggt      4560
     tccaacatta ttaagagaac atgttatgta tcgcgctcac gatgctcctg attccgctca      4620
     tatagggatg accaaaatga ttgaaaagtt gaaacgctat ctattttggc ccggcatggt      4680
     gactcagatt cgagactatg twgctaactg ctccatctgc aagtccacca agagtcccaa      4740
     tcaaattctt agacctccaa tgggcaatcc aactacttca gaacgaccgt tccaaaaact      4800
     gtatatggac ctgttaggcc cataccctag gtctaagagc ggcaatatcg gcctattaat      4860
     aatagtcgac cattgcacga aatttcattt cttacaccca ctacgaaaat tcacctctga      4920
     taaaatatgt gatttcctgg aaaaatacgt atttttcact ttcggagttc cggaatccat      4980
     attgacagac aacggatcac agtttaagtc tggctactat aaagctttct taacccgatt      5040
     cggtgttgca cctgtgtgta cggccataca ctccccacaa gctaacgcga gcgagcgagt      5100
     gaaccgatcg gtcttggcgg ctatcagggc ttacatcgga acagatcata ccaattggga      5160
     cagaaacata gatgagatta gcgcgtcctt gagggcaagc acgcatcgta gcacaggata      5220
     ttcgccgtac tttttgtgtt tcggacagaa tatggtgatg aacggcaagg attatgaact      5280
     tctaaggaaa ttgaatttga ttagagacga tacagcttta aaaacgtctg atctgatgca      5340
     attgactcgg atgcaggcac aggaaaaagt aagggaagct cacgccgcta acgctaaagt      5400
     gtatgacttg cgtagccgtt cagttcgttt taaagtaggc gatactgtat acgctcgtag      5460
     ctttgcacag agcaacgcag cgaagaagtt taacaataag ctagctccag ttttcattaa      5520
     ggctaaagtg tggaagaaaa ttagtcatat atactacgaa ttagcatccg aagatgacaa      5580
     acctctgggg gtataccatt taaaagatat aaggtcctaa aagaagaatg cccgaccttt      5640
     ttcagttaat acttcttcga gataggactc tagcagaatt aactgcgg                   5688
//
ID   Gypsy-46_DEl-LTR repbase;    DNA;    INV; 2060 BP.
XX
AC   .
XX
DT   26-OCT-2011 (Rel. 17.04, Created)
DT   24-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_DEl-LTR.
XX
NM   Gypsy-46_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2060
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 488-488 (2012).
XX
RN   [2]
RP   1-2060
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2060 BP; 649 A; 438 C; 438 G; 535 T; 0 other;
     tgtagggttc ggggtaatag caattaacaa aaacgtatcc cgcatgtcaa ttcggatagg        60
     cccaggcagg aatgtagaga agacgtccaa acttccaatc ggttatgcct gctgagtcgc       120
     attgcacaca cacacacacc cctacttaga tctctctctc tctcgctctc tatcggcgtg       180
     cgaaaggaaa agaaggaaaa atgagcgagt ttgggaaaag tcccgtttat tgtggatcta       240
     gaagtttcca attcgcgctg cctgaaccaa cgcgaagaga tgctcgctca cttgattttg       300
     ggaaccataa gcaaccacaa gtatttggtc agcagtatta atttcaactt tcaatatcgg       360
     cacgtgcata aactgtaccc caaaagccag agaggacgta gaccacgcgc tcttacaaga       420
     agaacagagc ctattgttaa aacaataaag tcgttcaaac tgcaagggta attatttgtg       480
     ctaattgaaa tgtgcgagtg aacctcacaa tgtgtctatg tatgtatgta gagcacgttc       540
     atcggaggcc ggccagaaag cacacgcgct cgtcgcgggc gcttttgcgc ttacatcttt       600
     ataacaaatt acatatttgt acatcaccgt gcctggccgg ccgatatttt gctgcgaaac       660
     tgggaaatct gtgcgttgct gcagcccaca cacaccaaca agtgacaaca taacccccat       720
     accagcagag cccagctaag gctgctgcag gtttgggcgc ttgcaaccgc atcttcgtaa       780
     acgccgcata cggaactacg agcggagcac aagtgatacc tggccgaaac ttggagaaac       840
     gcataccgac acgtggagcc ctaacctaga aggcagcaga cttgtgcaac agcctttcgg       900
     aagtacctgc ggatcatacc atttctgggt ggaaataaac aggcctaaag gagaccggcg       960
     cagcaaacca tcaaagaggg attgccacta ctagcagcat gtagtccgct acggagtaca      1020
     accgatgcaa gcacgcatac tcgcaaaaac agcgcctaca ctgacagacg tcggcgatac      1080
     cgatcgccca ttagagaagt cttgttgttt tgatttagct tgaactttta tttttttttg      1140
     ttgttgaaaa ttagacattt ttcttattag ctgtttcttt ttatttagca tataaattaa      1200
     gtgaatgcca gatgccacta ctaataatcc cgtttaaatt aaaataacca cgctctttga      1260
     gaagtcctaa acagcacctg catcttcgat gggcccagcg aatcggcagc ggaaaatatg      1320
     tgcgtaagtt tttattaacg acaacagtag ctatacatat atatatctaa gaataatttg      1380
     atttaaccgg gatgtgttaa gaaagggcat aaccaagagc ttcattaaat ttatcaagta      1440
     aaatcatgaa ttattagaat atgtttgaac aaaatatatt taagaagttt aaattgaaaa      1500
     gaagaagaac atgaattatt agaatgtaag ttcagaaact gaaaggaaac aggaacaaag      1560
     aatgaatatg aagaatttat gtaaattatc ttggattttg ttaccgttta atatgagcga      1620
     ataatttgta taaatacggt cagctgctag tacagcgatg ctgttgtcaa ccttctcgaa      1680
     tatgatttaa tctacaataa agcgtttgcc aaggggtaac agcaagcaat ttctactgtt      1740
     actaaggttg ggagggtaga gaatgggggc aaactacacc taagccaccc acattgctgg      1800
     tattcttctc ttattatata ttctttaggg tccgtctgtg tcgtccgata tctacaatat      1860
     tttgaccgat cattaaagta cagatagtgc acttaaaact tttcgtagta taacgggtgt      1920
     gatatataga tgaggaggaa gacccacgcc atatccgacg agctttgcac cgagccatgc      1980
     aagaagtgca cgaacaccga tccgtctata cgctagaaaa ctaccaatat ctagtgaaca      2040
     cctacctctg ggatactaca                                                  2060
//
ID   Gypsy-46_DWil-I repbase;    DNA;    INV; 4680 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_DWil_;
KW   Gypsy-46_DWil-LTR; Gypsy-46_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4680
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1861-1861 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3141-3614] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           480..4034
FT                 /product="Gypsy-46_DWil-I_1p"
FT                 /translation="MTIEQAAMSVILAHTAQVEPKLQRTIFTTNTKTRNEM
FT                 LNELKAFAVGKRKDHSVPVDAENKRMRLQLQPAVKCHFCGKNGHKMADCRL
FT                 RRQGNQRFSQHTARPPEMKRGPIICFKCGVAGHMKSACPEGSSSLIPKRIE
FT                 ERRVNLCQVKEPIGTLTQSGESYPFYFDSGAECSLVKEAISHKLSGKRINN
FT                 LVLLKGIGNHTVTSTLQILSNVKISNYFLEVLFHVVLSDSLNYDVIIGREI
FT                 LYHNFEVILSCDKVEFLKTISVCAVAVSDTSSNPANIDTELCGVDKSRLLN
FT                 ILGEYSSFFIDGIPKSRVTTGQLEIRLIDPNKTVQRRPYRLSLDEKEIVRG
FT                 RIEELIESKIIRPSCSPFASPILLVKKKNGSDRLCVDYRALNLNTVADKYP
FT                 LPLINDQISRLGGARYFSCLDMASGFHQIPIHPNSIERTAFVTPEGQYEFL
FT                 TMPFGLKNAPSVFQRAVMKALGDLAYSFVIVYMDDVMIVSQTKEEAFQRLE
FT                 TVLKVLSRSGFSFNVSKCSFLKSSVEYLGFEVREGEIRPNPRKKQALIDLP
FT                 PPQSVTQVRQFIGLASYFRQFMPGFSQTMKPLYCLTCKNKTFEWKSEHEQI
FT                 RQSVIKTLTDEPVLTIFDPKHPIELHTDASMDGYGAILLHKIDNKPHVVEY
FT                 YSKRTSPSESRYHSYELETLALFNSMKHFRHYLQGLHFVVYTDCNSLKASR
FT                 SKVDLTPRVHRWWAYMQSFDFEIQYRPGVKMAHVDFFSRNPLPIKLSAQAP
FT                 IKRVHLTEISDNWLLAEQQRDSETSSIISRLQNDELEEGLAKTYELRSKML
FT                 FRKIQRNGKSRCLPVIPRPFRWSVVNHVHEAIVHLGWEKTLDKMYEFYWFE
FT                 NMRKYVRKFVDNCITCRLTKPPSGKIQVELHPIPKVDIPWHTVHIDITGKL
FT                 SGKSDKKEYLIVQIDAFTKFVYLYHTVNVNTESCVNALKSSISLFGVPNRI
FT                 IADQGRCFTGKDFSKFCTMQKIGLHLIATGASRANGQVERVMSVLKRMLTA
FT                 IETSKRSWQDALGEIQLAINCTTNRTTKNSPLELLIGKEVRPLNMLHVFEN
FT                 QNKVDVSLVRKIAKENIDKSASYEKARFDKNKLKIVKFKVGDYVLLRNEER
FT                 HQTKLDPKFRGPFQVAEILDGDRYVLKSMANKRTYKYSHESLRGMPAEGIP
FT                 TELDMCVDSDVLVDSNTGHDVERDVK"
XX
SQ   Sequence 4680 BP; 1425 A; 890 C; 1059 G; 1306 T; 0 other;
     tcagaagtgg gattgtctcc accgcaaatt aatcctgacg accgcttgtg catgattttg        60
     gaagcgcaac accgtagttt aatcgaggtg atcagtgcag ttaaaagtgg acgactggag       120
     caaggtcgta caaaatcagt tgtcttgcca aagtttgacc ctgactcttt gggatcaagt       180
     gccgctgcat ggtgctcgac tgtggaccta atactggcgg agaattcgtc ggagggcagc       240
     gcacttctca tggccctaag caaatcgctg gaagggagtg cgtccaattg gctaccccaa       300
     atttcctttg ctggtatgac gtggaaccaa ttcaaggaat tgtttctgca gcactttgaa       360
     ggcactgaaa cccctgctgc cacaattttc aacattctca atggccgtcc aaacgaagga       420
     gagtgcttgt cattgtacgg aagccgacta ctcacgtcac tgctgtcaaa tggaaaggga       480
     tgactataga gcaagctgct atgtcagtaa ttttagcaca cactgctcag gtcgagccga       540
     agctgcaacg aacgattttt acaaccaaca ccaagacgcg caacgagatg ctaaatgagt       600
     taaaagcctt cgctgttggt aaaaggaaag accattccgt tccagtagac gctgaaaaca       660
     agcgaatgcg actacaacta caacctgccg tgaaatgtca cttttgcgga aaaaatggac       720
     acaaaatggc ggattgccgt ttaagaagac aaggaaacca gagattttct cagcacactg       780
     cccgtccacc agagatgaag agaggaccaa ttatttgttt caaatgcgga gttgctggac       840
     acatgaagtc tgcttgccct gaaggatcat catcattgat accgaaaaga attgaagaaa       900
     gacgtgtaaa cttgtgccaa gttaaagaac ccatcggtac cctaacccaa tccggtgagt       960
     cgtacccatt ttactttgat tccggagctg aatgttctct tgtaaaggaa gcaatatcac      1020
     ataagctttc gggaaaacga attaacaatt tagtcctctt gaagggcatt ggaaaccata      1080
     cagtaactag tactttgcaa attttgtcaa atgttaaaat aagtaattat ttccttgaag      1140
     ttctgtttca tgttgttcta agcgatagct taaattacga cgttataata ggtcgtgaaa      1200
     ttctttatca taattttgag gtcatattat catgtgataa ggtcgaattt ctgaaaacaa      1260
     tatctgtatg tgctgtggct gtctccgata cctcttcaaa tccggctaat atcgatactg      1320
     agttgtgtgg cgttgataag tctcgtttac tgaacattct aggtgaatat tcaagttttt      1380
     ttattgacgg aattccaaag agtcgagtta caaccggcca attggaaatt cgtttgattg      1440
     atccaaacaa aactgttcag agacgaccat accggctcag tttagatgaa aaagaaatag      1500
     taaggggtag gattgaggag ttaatagagt caaaaattat tcggcctagc tgttcgccat      1560
     ttgccagccc tatactgctt gtcaaaaaga aaaacggctc tgaccggctt tgcgttgact      1620
     atcgcgcgtt gaatttaaat actgtggccg acaagtatcc gttgccttta attaatgatc      1680
     aaatctctag actgggtggg gcaagatatt tttcctgtct ggacatggca agtggtttcc      1740
     atcagattcc tattcaccca aattcaattg agcgtacagc tttcgttaca ccggagggac      1800
     aatatgagtt tttgacgatg cctttcggtc ttaaaaatgc gccgtctgtg ttccagcgcg      1860
     ctgtaatgaa ggcattgggt gaccttgcct actcgtttgt catagtttac atggatgacg      1920
     taatgattgt ttctcaaaca aaggaagagg cgtttcaaag actagaaact gttttgaagg      1980
     ttttgtcacg atccgggttc tcctttaatg tttcaaagtg ctcttttctg aagtcgagtg      2040
     tagaatacct aggttttgag gtcagagaag gagaaattcg acctaatcct cgcaagaaac      2100
     aagctttgat agacttaccg cctccacagt ctgttactca agttagacag ttcattggcc      2160
     tggcgtcata ttttaggcag tttatgccag gattttcaca aacaatgaag ccgttgtatt      2220
     gtctcacatg caagaataag acattcgagt ggaaatcgga acacgagcaa attcgccaga      2280
     gtgtaataaa aacattaaca gatgagcctg tgctcactat atttgatcct aagcacccca      2340
     tcgaattaca tacagatgct agtatggatg gctacggagc gatcttatta cataaaatcg      2400
     ataataaacc tcatgttgtt gaatattaca gcaaacggac ctcaccttca gaatctcgtt      2460
     atcattcata cgaactagag acgctggcat tgttcaattc catgaagcat tttcgtcact      2520
     acctgcaggg cctacatttt gttgtttaca ccgactgtaa ttcgttaaag gcttcacgca      2580
     gtaaagtcga cctgacgccg agagtccatc gatggtgggc ttatatgcag tcatttgact      2640
     ttgaaattca gtatagacct ggtgtaaaga tggcccatgt ggatttcttt tctcgtaatc      2700
     cattacctat taaattgtct gctcaggctc ccattaaacg tgtgcattta actgagatat      2760
     cagacaattg gcttcttgct gagcaacaaa gagattctga gacttcttcg atcatttcta      2820
     gacttcaaaa tgacgagttg gaggagggtt tggcaaagac gtacgaactt cgttcaaaaa      2880
     tgctcttccg aaaaatccaa cggaatggta aatctagatg ccttcctgtt atacccagac      2940
     catttaggtg gtcggtagtg aatcacgttc atgaggcaat tgtacatctc ggttgggaaa      3000
     agactttgga taaaatgtac gagttctact ggttcgagaa tatgcgtaaa tatgtccgta      3060
     aatttgtaga taattgtatt acctgcagac tcactaaacc gccgtcgggc aaaatacaag      3120
     tagagctcca tcccattcct aaagtagata taccatggca cacggtgcac atagatataa      3180
     ctggcaagct gagtgggaaa agcgataaaa aggagtacct tatagtacaa atcgatgcgt      3240
     ttaccaagtt tgtttatttg tatcatactg taaacgtaaa tactgaaagt tgcgtcaatg      3300
     ctttaaagtc atcgatatca cttttcggcg taccgaatag aatcattgct gaccagggca      3360
     gatgttttac tggaaaggat tttagcaagt tctgcaccat gcaaaagata ggtttacact      3420
     tgattgcaac gggtgctagt cgcgcgaacg gtcaggtaga gcgcgttatg agcgtgttaa      3480
     aacgaatgtt aactgctata gagaccagta agcgatcctg gcaggatgct ttaggcgaaa      3540
     tacagctggc cataaattgc acaacaaata gaaccactaa aaatagtcct ttggaattgc      3600
     tgattggtaa agaagttcga cctttaaata tgttacatgt ttttgagaat cagaataaag      3660
     tcgatgtaag tcttgtaaga aagatagcta aagaaaacat agataaatcc gcctcctatg      3720
     aaaaagctag atttgacaaa aacaaactca aaattgtaaa attcaaagta ggcgattatg      3780
     tattgctcag aaatgaagag agacatcaga cgaagctaga cccaaagttc aggggaccat      3840
     tccaagtggc ggagatactc gatggcgaca gatatgtttt aaaatccatg gctaataagc      3900
     gaacttataa atattcgcac gaatcgttga gaggtatgcc ggcggaaggg attcccactg      3960
     agttggacat gtgtgttgat agtgatgtat tagtggattc taatacgggt cacgacgttg      4020
     aaagagacgt caagtaaaac ggcgttgaaa gagacgtcaa gaagaacaga gttgaaagag      4080
     actctggtga tgcgttagtg gattctaacg agtgagagac attggtggac tccaatgtgg      4140
     tgaaaggcat tgatggtttt caatgcagaa tgtcagactc cattcctgaa ggttacctga      4200
     agcactactc tgcgggtgct ggtaagagca cgagttattg tgttttcttg ttcagtatca      4260
     gtatggagag gtgaggtgat aggagcccaa tatggttggt gtccgggaca tatgttactt      4320
     cacgagagag tcaaaaacta gtgggagatc actgaacgcc gggtgcatag agtaatagcc      4380
     agatctatat cctgtattct gccactggta caacccatag aacaataaaa actaagcttt      4440
     attttaacat cctttataat aagattgaat caaattgtca tttcagactg agcaatgcat      4500
     gtcgtaacgt tattaatgta acacacgagg acgtgtgatg gtcaggaggg ccgtacagtg      4560
     ttgtactata attagtttac atctaatgtt aataaaataa gaactttgta tgttactgca      4620
     aatatgagtt tggtgattta ttaatggatg gaagttgact gattaagcca gatacgggta      4680
//
ID   Gypsy-46_DWil-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_DWil_;
KW   Gypsy-46_DWil-I; Gypsy-46_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-347
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1862-1862 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 347 BP; 114 A; 54 C; 85 G; 94 T; 0 other;
     tgtcacctgt aactatggta tgtccaacac tgccctttgc aggttgacaa ttggtatgtt        60
     gagattgcag gatgactcgg cagatttgag atgttgcctt tgcagaagca ttgttgctag       120
     atatatgttg ataagcctgg cagcgtgaca acattagaaa tgttgtcgag tgaggtttgg       180
     tgttaagtca ttggagtcgg cataagcagt cgaaaaatca gacgtgccgg aataacacct       240
     aaactcgctg cgctaacagt ttattaatac aaagtgagag tgaacagtag aaagtattca       300
     aagtaaagaa aatggaaaat actaagaaca ataatggata ttcgaca                     347
//
ID   Gypsy-46_LMi-I repbase;    DNA;    INV; 4961 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4961
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..1589
FT                 /product="Gypsy-46_LMi-I_1p"
FT                 /translation="MSTENRKSSVDMSEQNVTASTPRSNVSNSEEIILASP
FT                 GLIELLNRLTEQLTERIDKGNHEVSKQVESVKKEVTAVKDDLSKKIDDGLA
FT                 DLKSQLNETNRAVDEVRKQTCDLERAMKLGHEQLDTRVTVVESKISNVESD
FT                 LENKISTVEKYFDQENKIRKTEIQEVKVSLENKISESVTNSEGVIKKDVYN
FT                 LSQRVSSLQESVVNSKMSICGGFNWANVVIKTYPGEGKIHPKDFLHHCSDN
FT                 FTVEMTDAMKIKFVKRFLDNEAYTWVNQLDTEDMSYSEFERCFLNKFWSKI
FT                 KQARVRSDFLHGGKYRESYGNMRDFCEAEIRKLVHLDSPLDETTLVDTLRR
FT                 RLPGRIQQALDCGPDDSVEDFLRFVGRLDRSYERERERNRYQEDHHGRDRR
FT                 DNHQEDSRENRSRQQGGSTDYRNRQGRNDRNQGYYKSNGNGQEN"
FT   CDS           join(1604..3883,3867..4235)
FT                 /product="Gypsy-46_LMi-I_2p"
FT                 /translation="MEACQVGVRNRTRNQATTNRIRFGHKWENEQYRQGQK
FT                 VTHRVNRLKFNKELWEVIKNQAWKEEDKCIEPEEVVLDDDTVANMYNASED
FT                 MAVEEPKISEEHDVFGLCKLLSDKVEDAEDRLNVTAHETVKTENHEDFDVL
FT                 SSVSSEKSEDDSVEDSEEDVEVMEFEDLEKELDGMIYVEVKEGCIVSDGQC
FT                 ETVCVVDDVKSCENQVVPVKLSSTESCRSRNRQEEVGKDILHCVIQSYIDK
FT                 EEKANVLDKLLCKYHELEDNVPRLEQCVTNDNCVANGCMARQPVESNVSLN
FT                 HVQANDDSCTMKHEDIIEDITHEEEEDIQYDVTGCPYITVFIDGKGKEALV
FT                 DTGSPISGISEQFRDCVKHVPDYMEMPVVGIKIKGATGRHSKVVNRQALLN
FT                 FSVNDVNLCQGCLVIPNLSEDILLGTDWIMKVNAVFDWGGRKVMFVDPKTG
FT                 VLHCTAMILKNGNSLSKQSVELDLLDHNRDVEDMHEEPEEAMEDINYHELV
FT                 NTKVEEANKLDEEQKEELRRVLWNYHDVFDDRPGRVKNYQCTLRVKPHEPF
FT                 YIKPYGVPIAKRKAVEKELEKMENWNIIERSTSEYNNPIIVISKKNGDVRI
FT                 VLDSRHLNKFLERETDHPESIDELLYKFEHIKYMTSLDLTSGFHQVPLARD
FT                 SRKYTAFLYNGRSYQYCVVPFGLNVSVAEFIRALDLVLGKDLFEKLTVYVD
FT                 DILVTGQTWEEHISLLEEVCRRLRAGGMSLKLEKCKFAVEQLKFLGHIVTE
FT                 EVLDNENAMTMRMPCDVEYIKGKDNLVADSLSRLPVGGEFEDSSGACEEEY
FT                 NRTQAIQTVVGNNKTLYRCYFCKIYCSYKSFVYMYSLMKYLETCIVNMLDI
FT                 NFCKPQESTHSVCAKCVGKHWVSSYVVAYF"
XX
SQ   Sequence 4961 BP; 1661 A; 705 C; 1224 G; 1370 T; 1 other;
     attggtggag catagctggg attgcgtcat atacagtgtc tacagagtgt ttgtgttgca        60
     ggagaagtat gtttggatgt atataatcga tgtttgaaaa accaaggagg acgtgaatct       120
     ggaattatac ggcaaagaaa aacggagcac ttaacctgga aattggatgc ttgggcccgg       180
     atcgtcgcat cgctggacac tgaataacaa gataagtaca gcagcgctta ttcatttgta       240
     tttgtagtct gggttgtttg gcactgtaaa agacgatgtc aactgagaat aggaaatcta       300
     gtgtagacat gtcagaacag aatgtgacag ccagtacacc tcgtagcaat gtgtcaaata       360
     gtgaagaaat aattcttgca tcaccaggtc ttatagagtt gttaaatcga ttaacagaac       420
     aattaactga acgtattgac aagggaaatc atgaagtgag taaacaagta gaatctgtta       480
     aaaaggaagt gacggcagtt aaggacgatc tgagcaaaaa gatagatgac ggtttagcag       540
     atttaaagtc tcagttgaac gaaacaaaca gggcagttga cgaagtcagg aaacaaacat       600
     gtgatcttga aagggcaatg aagttaggac atgaacagct ggacactcgt gtgactgtag       660
     tagagagtaa aatcagtaat gttgagtctg accttgaaaa caaaattagt actgtagaaa       720
     agtattttga tcaggaaaat aaaattagaa aaactgaaat tcaggaagtt aaagtgtcat       780
     tagaaaataa aattagtgaa agtgtgacaa attctgaagg tgttattaag aaggatgtgt       840
     ataacctcag tcaaagggtc agttcattgc aagaaagtgt agtaaatagc aaaatgtcga       900
     tctgtggtgg ctttaattgg gcaaatgtag taattaagac ataccctggg gaagggaaaa       960
     tccatcctaa agacttttta catcattgct ctgacaactt cactgtagaa atgactgatg      1020
     caatgaaaat taaatttgta aagagatttt tggacaatga agcttatact tgggtcaatc      1080
     agttagatac agaggacatg tcatatagtg agtttgagag gtgctttttg aataaattct      1140
     ggtccaaaat caagcaggct agagtaagaa gtgatttctt gcatggggga aagtacaggg      1200
     aaagttatgg caatatgagg gacttttgtg aggctgaaat cagaaaatta gtgcatcttg      1260
     actcaccttt agatgaaacc acattggtgg acaccctacg tagaagatta ccaggtagaa      1320
     tacagcaagc gttagattgt ggacctgacg attcagttga ggacttctta agatttgttg      1380
     gaagattaga cagaagttat gagagagaaa gggagagaaa ccgctaccaa gaagaccatc      1440
     atggaagaga cagaagagat aatcaccaag aagatagtcg tgagaaccga agtagacagc      1500
     aaggtgggag tacggattat aggaacagac aaggaagaaa cgataggaac caaggttact      1560
     acaagtctaa tggaaacggg caggaaaact aaatgtcgcc cctatggaag cctgtcaggt      1620
     tggggtgaga aataggacaa gaaatcaggc taccacaaat aggatcagat ttggacacaa      1680
     atgggaaaat gagcaatata gacagggaca gaaggtaaca cacagggtaa atcggctcaa      1740
     gtttaacaaa gaactgtggg aagtcattaa gaaccaggct tggaaagaag aggacaagtg      1800
     tatagaacca gaagaggttg tactagatga tgatactgta gccaatatgt ataatgcaag      1860
     tgaagatatg gctgtagaag aacccaaaat aagtgaagaa catgatgtgt ttggactgtg      1920
     taaattgcta agtgataagg ttgaagatgc tgaagacaga ctgaatgtta ctgctcatga      1980
     aactgtgaag actgagaatc atgaagattt tgatgttttg tctagtgtga gttcagagaa      2040
     gtcagaggat gacagtgttg aagatagtga agaagatgtg gaggtcatgg agtttgaaga      2100
     tttggagaag gaacttgatg ggatgattta tgttgaagtc aaggaaggtt gcatcgtgtc      2160
     tgatggccag tgtgagacag tgtgtgttgt agatgatgtc aagtcttgtg agaatcaagt      2220
     cgtaccagtg aaattgagca gtactgaaag ttgtcgaagc agaaacagac aagaagaggt      2280
     agggaaagac atcttgcatt gtgtcataca gagctacatt gataaggaag agaaagccaa      2340
     tgttctagat aagttactgt gtaaatatca tgagctagaa gataatgtgc ctaggttaga      2400
     gcagtgtgtt accaatgata attgtgttgc taatggatgt atggctcgtc aacctgttga      2460
     aagtaatgtg tccctgaatc atgtacaagc taatgacgat tcctgtacta tgaaacatga      2520
     agatattatt gaagatatta ctcatgaaga agaggaagat atacaatatg atgtcactgg      2580
     atgcccatat attactgtgt ttattgatgg aaaaggcaag gaagcgttag ttgatacagg      2640
     tagtccaatc agtggaattt ctgaacaatt tagagattgt gtgaaacatg taccggacta      2700
     catggagatg cctgtagtag gaatcaagat caagggtgct accggcagac acagcaaggt      2760
     agttaaccgg caagccttgt tgaactttag tgtgaatgat gtcaatctat gtcaaggatg      2820
     tctagtaata cctaatctgt ctgaggatat cttgctagga actgactgga tcatgaaagt      2880
     gaatgctgta tttgactggg gaggaagaaa agttatgttt gtggacccga agactggtgt      2940
     tttacattgt actgctatga tattgaaaaa tgggaatagc ctgagtaagc agagtgtaga      3000
     attagattta ttagatcata atagagatgt agaagacatg catgaagagc ctgaagaagc      3060
     catggaggat attaattatc atgaactcgt aaataccaag gtggaggaag ccaacaaatt      3120
     agacgaagaa caaaaagaag agctgagaag agtcttgtgg aactatcatg atgtgttcga      3180
     tgacagaccg gggagagtga aaaactacca gtgtaccttg cgggtcaaac cacacgaacc      3240
     attttacatc aaaccatacg gtgtccctat tgcaaaaagg aaagctgtag agaaagaact      3300
     tgaaaagatg gaaaactgga acataattga gaggagtact agtgaataca acaacccgat      3360
     catcgtgata tccaagaaga atggagatgt gaggattgta cttgactcca gacatctgaa      3420
     caagttttta gaaagggaaa ctgaccatcc agagagcatc gacgaactat tgtataaatt      3480
     tgaacatata aaatatatga ctagcctgga cttgacttct ggttttcatc aggtgccact      3540
     tgccagagac tcaaggaagt acactgcttt cttgtataac ggaagaagct atcagtactg      3600
     cgtggtccca ttcggattaa atgtttctgt agctgaattt atcagagctt tggatttggt      3660
     attaggcaaa gatctttttg aaaagttaac tgtgtatgtg gatgatatcc ttgtcactgg      3720
     tcaaacctgg gaagaacaca taagcttact ggaagaagtg tgcagaagat taagagcagg      3780
     agggatgtct cttaagctag aaaaatgtaa atttgctgtg gaacagttaa aatttcttgg      3840
     tcacattgta actgaagaag tactagacaa tgagaatgcc atgtgatgtg gaatacatta      3900
     agggcaagga caatcttgtt gctgattcac tctctcgttt gccagtgggg ggtgaatttg      3960
     aagatagcag tggagcctgt gaagaggaat ataacagaac tcaagccata cagacagtag      4020
     tgggtaataa taagactttg tacaggtgct atttttgtaa aatttattgc agctataaga      4080
     gttttgtata tatgtattct ttgatgaaat atcttgaaac ttgtattgtc aatatgttgg      4140
     atataaactt ttgtaaacct caggaaagta cacattctgt gtgtgctaag tgcgttggca      4200
     agcactgggt ttctagctat gtggtagcat acttctgatt tcggtttctg gtgccacatc      4260
     tcctactcat tctgtaacct gttcaaatta tctcatatct atcattctat ctttcttctt      4320
     tagtgttaag gtatgaaatg tgtgtatgta atttttttat gttaataaga atattgattt      4380
     caatatagtt tgttcagtta gacttttcaa tgtattaatt tatgtcacag ttaaaatttg      4440
     aattcaaatt gttgcctgag tattaaagag ttaaagtatt tgagatattg atagaagtca      4500
     tgatagaatc agttaattaa tgttagtgtc taatgatttt gtaagatacc aagtttcatg      4560
     tcctcaaagt tttaaaaaat tcagttcaga atgtgagaac agtaaatttt acagtatagt      4620
     tatgtggata tttttgtcat atgtttcttg tgtattttgt tttgatgctt aaaaaggtca      4680
     gacaagttca gtgtggcaga ttcttgagwg tcagctgttc ccgatactgc cctctgctct      4740
     tgggaggcca tacccttgtc acctacttac tgcacttgga actttcagga tctggtgatg      4800
     ctgcgcgtgt ggactgtgct gtgccaaccc cagacaggac taagtgaggt actgatgcag      4860
     ccaagccagc caccgggtcc aagccatcca aagtaggtgc tttactctta catcacctcg      4920
     acttatgagg gcatcgtcga gctgatgggg ggggggggta t                          4961
//
ID   Gypsy-46_LMi-LTR repbase;    DNA;    INV; 1087 BP.
XX
AC   .
XX
DT   19-MAY-2014 (Rel. 20.01, Created)
DT   19-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1087
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (19-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 1087 BP; 335 A; 146 C; 222 G; 384 T; 0 other;
     tgtgatgata ctgctggccc cctcatctca atgttatcgt acgataccgt ctgcgtcgga        60
     cccggaatcg tgtggttcaa tagtgatata tgttgcgtgt gaagttagtt acaaacgaaa       120
     tagccagcct aggaatcagt gtaggacagt gtctcggtga tactgtgatt aaaacaagtg       180
     atagatttca ttaattaaga gatttgtata gttctttcca gacagttcta taaacaatag       240
     ttttgtcatt gtacattatt tcaagaacta gacagacgaa tgtaaaaact tttgtatcaa       300
     agacatgtaa aataaatagc attgtatata tgttaggctc ataaacaagt tgtgttgacc       360
     agctaattgt gttaattaat gtaatagtcg agatttgaat attgtaattc tttgtatata       420
     ttgactgacg tgagattttg aacctatttt gagaattgcc aagatatttg atagttcaat       480
     atatgttagg aacatgtatg atgtactcat taacaaatta attgacattt aacattgcac       540
     tttgttgtca aacagaaaga tccgagattt cgacttaaaa agatatgcgc catctaaaat       600
     tattgtatgt atagttttca ttttatattg tgattatttt tgtgtacatg aaatgtttta       660
     ctgttgtgtt tggtaattgt aaatcagtat attcaattgt tatgaacaat gcataatgta       720
     atgtcattat tgccgatgtt atatatttgc ctcaccgcct tgcgtggggg agttcgagtt       780
     ttggtcgttt gtcaagtgct ctggaagcta tgtcagtctg ttgttttgaa atggaagtac       840
     tatcagctaa gttctgttgc attgtgtatg ttttgaagtt gtaatgtttt ggtggagaag       900
     cagtttgatt gcaaattaaa gaagaagtga aaaattgtac ctacgagtat ttatttctac       960
     cacgacgccc caggagaata atgttgcagc gagcagaacc cccatacatc gtaatgttga      1020
     aaagctgagt atctgtttga agtggtagaa tgaactgtaa ttacttaaga atcaagtaaa      1080
     cgttata                                                                1087
//
ID   Gypsy-46_MSe-I repbase;    DNA;    INV; 4493 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4493
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 923-923 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..4492
FT                 /product="Gypsy-46_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADKSKRRSCRQNRPSIPALEQQLQAIVDRLNALEDR
FT                 RVSTDNEVAGPSTERHMLVPDTVTVPVPEPVTVPVPPTLLSEPMGALAVPS
FT                 SGASCAASSXVPNDDHRRATETVISEVADKLVNAFNAMPVRSNHIFIPNFD
FT                 PSLHDFDVWCRDVDHMRLLNKWDDRECLSRIGMCLKGDARLWLHEWASNDR
FT                 SWSNFKREFKALCPRRLDFANILFDVMKTDSDNYSTYAEYARRSLLRLRII
FT                 HGLSDELISAIVIRGITDPHIRAVATNSHLPPDDIVNFLSIYTKSIQPTIP
FT                 LGDRPRGMIRKNESQLNIRKREHSSIKPRCFSCGNFGHKQNSCTKRVRPXA
FT                 STSNLSRNSANNSMLKREPCSFCKKIGHKVDDCFAKQRSESRGKSGVNFCR
FT                 ETSNMYKQNDIATAVIQGVPVDILIDSGSTISLISESVTKHFQCTQTPSFR
FT                 VLRGIGSQEIESTYCTTLTVEFSEITLEVDFHVVMDRYMNTPVIIGTDVLN
FT                 RDGVVYTRTRGKQLLTRTNTVLKIESNTSLLVNTPLVGKDRERLMKILENF
FT                 MNYLIAGTASTTVTTGTMHIRLHKETPVVYRPYKMSHDEKLRVREIIKDLL
FT                 SKGVIRESESEFSSPVLLVKKKDGSDRLCVDFRALNANTVKDHYPLPLIDD
FT                 HIDRLGQAKYFTSLDMATGFHQIKMDNDSIHRTGFVTPEGHYEYVKMPYGL
FT                 ANAPIVYQRIISNTLRTFIDSGKVCVYIDDVLIPSLTVDEGLQILQEVLIT
FT                 LTDSGFSLNLKKCKFLATEVEYLGRTISNGQVRPSAHKVEALLNSRVPSNV
FT                 KEVRQFLGLAGYFRRYIPAYSQMTACIANLTRKGVQFIWGKDQEKVRKDII
FT                 ERLTSEPILVIFDPFLPTEVHTDASAHGYGAVLLQTHKGEFKRPVAYFSKV
FT                 TQGAEPRYHSYELETLAVVKALQHFRHYLIGIKFKVVTDCNALKLTQRKKD
FT                 LLPRVARWWIFLQDYDFELEYRKGAALSHADYFSRNPVNICEIRKPQNWAQ
FT                 IAQAADEEVQNLLQRLRAGEVDSSRYVNRNDVLYYKMDVVGENPRLLCYIP
FT                 KGHRLSLLRVFHDEHQHIGAEKVVELILKHFWFPGLRKFVHKYIQHCIVCI
FT                 SHKTVPRQPLQPIESWNKPNKPFDTVHTDVLGPLPDSXGFKYVVINVDAFT
FT                 KYCLLYSMHKQDASELKKIFENSFSLFGAPRLIIADRGRMYESALFVNWVK
FT                 ELGCEMHFITPGMHQSNGQVERYCRTVANMIRVEANFRHEEWSNILWKIQL
FT                 TLNITVQKSIRCSPLNLLIGIDCATPIIRSLVRDVALDATSPNRESLRELA
FT                 RQRASRLLDENRTRQDARVNERRKAPRSFCMGDTVFVRKTNQTAGKLDSGM
FT                 RGPYVVKRVLPHDRYELKLLSGSFGKTTQAAAEYMVKWHGEWTPDVCATFF
FT                 EDDDDELQDNGNSHTEHHDVEADTNVPAFARQTIEPQQACSGSQHSSIARE
FT                 GASQSGEA"
XX
SQ   Sequence 4493 BP; 1297 A; 892 C; 1019 G; 1280 T; 5 other;
     tcagaagtgg gattcgttgc tcactcttag aattctttta gactttaact atcagtgcat        60
     actttttgtg acaatggcgg ataaatcaaa acgaagaagc tgcaggcaaa atcgaccatc       120
     tattcctgcc ttggaacaac agcttcaagc aatcgtggat cgcttgaacg ctttggaaga       180
     tcggcgcgtg agcactgaca atgaggtagc gggtccatcg accgagcggc acatgttggt       240
     gcccgatact gttactgtgc cggtgcccga acccgttact gtgccggtgc cgccgacgct       300
     gttgagtgaa ccaatgggcg cgctggctgt gccttccagc ggcgcttcct gtgcggcaag       360
     ttcagasgta ccgaacgacg atcaccgccg cgcgacggag acggttatta gtgaagtagc       420
     cgataagttg gtaaacgcat ttaacgcaat gccggtaaga tcaaaccata ttttcatacc       480
     aaatttcgac ccgtctttac atgattttga tgtatggtgt cgagatgttg atcatatgcg       540
     tttattaaat aagtgggacg atcgcgagtg cttatcgcgt attggtatgt gcttaaaagg       600
     tgatgcacgt ctttggcttc acgaatgggc tagtaatgat cgtagttggt ccaattttaa       660
     acgwgagttt aaagctttgt gtccccgtcg tttagatttt gcgaatattt tatttgatgt       720
     aatgaaaaca gattctgata attattctac ctatgccgag tatgcccggc gttctttgtt       780
     acgtttgcgc ataatccatg ggttaagcga cgagttgatt tcggcaattg tcatccgcgg       840
     aataacagat cctcacattc gtgcggttgc tacaaattct cacctaccgc cggatgacat       900
     agtaaatttc ttatcgatat atacaaaatc tatacaacct actataccat tgggcgaccg       960
     accacgcggt atgattcgca aaaatgagtc tcaattaaac atacgaaagc gcgagcattc      1020
     tagtataaaa ccgagatgtt tttcttgcgg taattttggt cataagcaga attcatgtac      1080
     aaaacgagta cgaccagakg cctcaacaag taatctatct agaaatagtg ccaataattc      1140
     aatgttgaag cgtgaacctt gttcattttg taagaaaatt ggccataaag tggatgattg      1200
     ttttgctaaa caacgttccg aatcacgcgg taagtcaggc gttaattttt gtcgtgagac      1260
     ctctaatatg tataagcaaa acgatattgc gaccgcagta attcagggtg tgcctgttga      1320
     tatcttaatt gatagcggat cgacaatttc tttgatatct gaatcggtta caaaacattt      1380
     tcaatgtaca cagacaccat cattccgcgt actgcgtggt ataggtagcc aagagataga      1440
     atctacgtac tgtactactc taacagttga gttttccgag attaccctcg aagtcgattt      1500
     tcatgttgta atggatcgat acatgaatac accagtgatt ataggcactg atgtattgaa      1560
     cagagatggc gttgtctata cacgaacacg aggcaaacaa ctgcttacga gaaccaacac      1620
     tgtattgaaa atagaatcta atacatcatt gttagttaac accccattag ttggcaagga      1680
     tagggagcgg ttgatgaaaa ttctcgagaa ttttatgaat tatttgattg ctggtactgc      1740
     ctccactaca gttacaactg gtaccatgca cattcgctta cataaagaaa ccccagtagt      1800
     ttatagacct tataagatgt cccatgacga aaaattgcga gtaagagaga ttattaaaga      1860
     tttgttaagc aaaggcgtca taagagaatc agaatcagaa ttttccagtc ctgttcttct      1920
     tgttaaaaag aaagatggta gtgatagact ttgtgtggac ttccgggcgt taaatgcgaa      1980
     taccgtgaaa gatcactatc cattacctct aatagatgat cacattgatc gtttgggtca      2040
     agctaaatat ttcactagcc ttgatatggc taccggtttt caccaaatta aaatggataa      2100
     tgattctatt catcgcacgg gtttcgttac tccggaagga cactacgagt atgtcaagat      2160
     gccttacggc cttgcgaacg cgcccatagt ttatcagcgc ataatatcta ataccctgcg      2220
     aacttttata gactctggta aagtttgcgt ctatattgac gatgtgctaa tacctagtct      2280
     taccgtcgac gagggtttac aaatcctcca agaagttctc ataactctaa ctgactcagg      2340
     attctctctt aatttaaaga aatgtaagtt tcttgctacc gaagtcgaat acttagggcg      2400
     aacaatcagc aacggtcagg taaggccgag cgcgcataaa gtagaggctt tattaaattc      2460
     gcgtgtacca agtaacgtaa aagaggtacg tcagttctta ggtctggcag gttactttcg      2520
     ccgatacatc cccgcgtatt ctcagatgac tgcatgtatt gccaatttaa ctcgcaaggg      2580
     tgtccagttc atatggggca aggatcaaga aaaggtacga aaagatataa tagagcgatt      2640
     gactagtgag ccaattttgg ttatttttga tccctttctg cctaccgagg tgcatacaga      2700
     tgcctcggcg cacggttatg gtgcggttct actccaaacg cataagggtg aatttaaacg      2760
     acctgttgct tacttcagca aagtcactca aggtgctgaa cctcgttacc actcgtatga      2820
     gttggaaacg ttggctgtcg tcaaggcgtt acaacatttt agacattatt taattggaat      2880
     taaatttaaa gttgtaacag attgtaatgc gctgaagttg actcagcgga agaaagattt      2940
     actgccgaga gtcgctcggt ggtggatatt tttgcaggat tatgactttg agcttgaata      3000
     tcgtaagggg gctgcgttat ctcatgctga ttactttagt cgaaatccag taaacatttg      3060
     tgaaatacgt aaacctcaaa actgggctca gatagcgcag gccgcagacg aagaagtgca      3120
     aaatttgttg caaaggctca gagccgggga agtggactcc tcgcgatatg ttaatcgtaa      3180
     tgatgtactt tattacaaaa tggatgtagt tggwgaaaat ccacgtttgc tgtgctatat      3240
     accaaaaggc caccgcctta gtttgttgcg tgtgtttcat gacgaacacc agcacattgg      3300
     tgcagaaaag gttgttgaac taatattaaa acatttttgg tttcctggat taagaaagtt      3360
     tgtacacaag tatatacaac attgtattgt ttgtatttct cataaaactg taccgcgtca      3420
     gcctttacaa cctattgaat catggaacaa gcctaacaaa ccgtttgata cagttcacac      3480
     tgatgtttta gggccacttc cagattcaaa sggtttcaaa tatgttgtta ttaatgtaga      3540
     cgcatttact aagtattgcc ttttatattc aatgcacaaa caagatgcga gcgagttaaa      3600
     gaaaattttt gaaaactcat tttcactctt tggtgcacct agacttataa ttgctgatcg      3660
     tggtcgcatg tatgagagtg cattatttgt taattgggtt aaggaattgg gctgtgagat      3720
     gcatttcatt actcctggaa tgcatcaaag caatggacaa gttgagcggt attgtcgcac      3780
     ggtagcaaat atgattcgtg tagaagcaaa tttcagacac gaagaatggt caaatatttt      3840
     gtggaaaata cagctcacct tgaacattac tgtacaaaag tcgattcgat gttcgccttt      3900
     aaatttgtta attggcattg actgtgcaac gccgatcata cggtcactgg tgcgcgatgt      3960
     ggctttggat gccacaagtc caaatcgcga atcgctacgc gagctcgctc gacaacgtgc      4020
     ttctagactg ttggacgaaa atcgcactcg gcaagatgct cgtgtaaacg aaaggcgaaa      4080
     ggccccgcgt tcgttttgta tgggcgacac ggtgtttgtg cgtaaaacaa atcaaactgc      4140
     gggcaaattg gattctggta tgcgcggacc atacgtggtc aaaagagtat tgccacatga      4200
     tcgatatgaa ttgaaattat tatctggctc ctttggtaaa actacgcaag ccgctgccga      4260
     gtacatggtg aagtggcatg gggagtggac tcccgatgtg tgtgctacat ttttcgagga      4320
     tgacgatgac gaattacaag ataacggaaa ttcgcatacc gaacaccatg atgtggaggc      4380
     agatacaaac gtaccagcct tcgcacgcca gaccatagag ccccagcaag catgttcagg      4440
     ttcacaacac agctctattg ctcgcgaggg cgcatcgcag tcaggagagg ccg             4493
//
ID   Gypsy-46_MSe-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-267
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 972-972 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 267 BP; 77 A; 40 C; 67 G; 83 T; 0 other;
     aataaggagc gaactagttt gtgaagaggc gtggcctacg tgacgtcaca gtagttgtgg        60
     aagggagtag ggagagctcg agcgagcgcc tgcgccagtg cggactcact ttgccgttgg       120
     cattcggacg agacagtcgt tgcattatag tgttgaattt ctgctagtaa taataattta       180
     atgataattt gtaattcatc aaagattaag attacacttg taatagtttg tatttttttt       240
     aaataaaatc ggttcaaatt cctaagt                                           267
//
ID   Gypsy-46_SiCu-I repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4146
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5067-5067 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..4038
FT                 /product="Gypsy-46_SiCu-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSVIGSLKQFEPASDDFEAWVSVFDTFLVANGIDKSK
FT                 KEEQCCAIFLSSIGIPTFTTLSNLISPDNPTSKKLDELIEVLKKHYKPAPK
FT                 AIAERFKFAHRRQQPGESASAYLAELRKLATTCKFKNLDESLRDQFIYGLA
FT                 SVAAQKTCFGKDDDVKLEDVVQVAIAQESAEASAALVREGPVKSNQQEEQV
FT                 NKSSFKSGWKFKSKRGNPPAPEKSKEKNQQSSKSNDSSKSCPNCGSKAHST
FT                 AKDCPHKDVECHHCHKRGHFQKYCRAKDKKEVVSTRNIHQVTDSSEDLIMI
FT                 QVEVNGHPHQMELDTGAGKGMLGVAFWKSLGSPKLQPSNVVFKTYTGEEFH
FT                 PLGDLKCKFKYKSTVIDHVIPVVRGTSLFGRDLIRLFKLQVSQCHKSTTAE
FT                 RISLESLLKEYDDLFTAPTGSIQGFKAKIMLKDDAIPKFLKARPLPFALRE
FT                 KVDKELEQMEKQGVIQRIEHSEWASPIVVVRKPNGKIRITGDFKNTVNSQL
FT                 NVTQYPLSTPEDLFSSIAGGEKFSKLDGVNAYHQLEVEETCKKFLVINTHR
FT                 GLFRYNVLPQGIASSPAIFQEFMDELMKGVPMSGSYIDDGLCSGQCDADHL
FT                 KSLKLIFQRMRKLNYRLSKDKCEFLKPKIEYLGHVITKDGIHTSPTKVEAI
FT                 RVMQSPVNVSELRSFLGIINFYGKFVPFLSDVCEPLYQLTRDNVKWRWSSQ
FT                 CQKSFEEVKSLLSSAEVLAHHDPSIPIGIACDASSTGIGIVLFHRYEDGSE
FT                 RPIAYASKMLTDTEKRYSQIEKEALAIIIGVKKYFKFLCGRKFILVTDHRP
FT                 LLAIFGNKSNLQPYVATRLHHWNLYLSQFCYDIEYRNTKDHGNADTLSRFP
FT                 SSAEDPDLVDEEIECQVKLIASEQLSVLPVNAKAIKSATARDKELSEVYKL
FT                 IMSGWPNHMSKQEDLYPYHLRKEELSITQGVIMWGIRTVIPVGLRQQLLSE
FT                 LHSSHSGIVRMKSLARQYIWWPNIDEDIEKVCKQCTQCCENRHNPASAPLH
FT                 PWEFPERPWQRIHMDLAGPMHGKMWLLIVDAHSKWPEVFSMNQDTTSTAVI
FT                 RRVRETVCRYGIPDQIVTDNGKQFTSKEFELYCSNNGIRHTTSSAYHPRSN
FT                 GEAERFVQTFKSSLKHATGDVEFKLQQFLLTYRITPHATTGVSPAELLQGR
FT                 KLKSLLDNVRPDVKINVQKSQQRQCQDYNKRVKARNLQVSQKVWVQTYSKN
FT                 QPKWSLGTVIKILGPVTYLVLFNGFKYKRHIDQILEADPLLRPNEPVEVAV
FT                 ETPEIPEGEPEEDQPPEDLGSPAASPQARRYPQRQRRPTAFFPN"
XX
SQ   Sequence 4146 BP; 1195 A; 1008 C; 914 G; 1029 T; 0 other;
     cattttggcg acgaggatgg gatcccgtta aaaagtacta attgaacagt aaagttaatt        60
     gaagttgttc cagtcaattg tccagtcagt cattcagtta aagtcagttg ttaatccatc       120
     atcatgtcag tgattggatc cttgaagcag tttgagccag cctcagatga ttttgaagct       180
     tgggtcagtg tgtttgacac gttcctggtg gccaacggaa tcgacaagtc caagaaggaa       240
     gaacagtgct gtgccatctt tctctccagt attgggattc caactttcac caccctgtcc       300
     aatctgattt caccggataa cccgacatcc aagaaattag acgagttaat tgaagttttg       360
     aagaaacact ataagcccgc accaaaggct atagctgaac gttttaaatt tgcacatcgt       420
     cgtcaacagc caggagaatc agcctcagct tatctagcgg agttgcgtaa actcgctaca       480
     acgtgcaaat ttaaaaatct cgatgaaagt ctccgagacc agtttattta tggactcgcc       540
     agtgtagcag cccagaagac ctgttttgga aaggatgatg atgtcaagtt ggaggatgta       600
     gttcaagttg ccattgctca ggagtctgcc gaagccagcg ctgcccttgt tcgagaaggt       660
     cctgtcaagt ccaaccaaca agaagagcaa gtcaacaagt catcattcaa gtctggatgg       720
     aagttcaaat ccaaacgtgg aaacccccca gctccagaaa agtcaaaaga gaaaaatcaa       780
     cagtccagta aaagtaatga ctcgtccaag tcatgtccta attgtggatc caaagctcac       840
     tctacagcaa aggattgtcc ccacaaggat gttgagtgcc accactgtca caagcgtggt       900
     cacttccaaa aatattgccg tgccaaagac aagaaggaag tcgtctcaac acgcaatatc       960
     catcaagtta cggattcgtc tgaagacctg atcatgatcc aagtggaggt caatggtcat      1020
     cctcaccaaa tggaattgga tactggtgca ggaaaaggaa tgctaggagt cgcattttgg      1080
     aagtccctcg gctctccaaa actccaacct tccaatgtcg tcttcaaaac ctacacagga      1140
     gaggagtttc atcccctggg agatctcaag tgcaagttca agtacaaaag cactgtcatt      1200
     gatcacgtga ttccagtcgt ccgaggaacc tcactttttg gcagagatct catccgtttg      1260
     ttcaagttac aagtctcaca gtgtcacaag tcaaccaccg cagagcgtat ctcgttggag      1320
     tcactgctga aggagtacga tgacctgttc accgctccta ccggaagtat ccaaggcttt      1380
     aaagccaaaa tcatgttgaa ggatgacgcc atcccaaagt ttctcaaggc acgtcccctg      1440
     ccatttgccc tccgagaaaa agtcgataag gagctggagc agatggaaaa gcaaggcgtt      1500
     atccaacgca ttgaacacag tgagtgggca tcccccattg tcgtcgtccg gaagccgaat      1560
     ggcaagattc gcataaccgg agacttcaaa aacactgtca acagtcaatt gaatgtcacc      1620
     cagtacccgt tgtctacacc agaggacctg ttttcgtcaa ttgctggagg agaaaagttt      1680
     tccaagctgg atggagtgaa cgcgtatcac cagttggaag tggaggaaac ctgcaagaag      1740
     tttctcgtga tcaacacgca ccgtggtctg ttccggtaca atgtcttacc acaaggcatt      1800
     gcctcctccc cagcgatctt ccaggagttc atggatgaac tcatgaaagg cgttccaatg      1860
     tctggatcct acattgacga tggtctctgc tctggtcagt gcgatgctga tcatttaaag      1920
     tcactgaagt taattttcca gcgtatgcga aaactaaact atcgcttatc aaaggataaa      1980
     tgcgagttcc tgaagcctaa gattgagtat cttggtcatg tcatcaccaa ggatggtatc      2040
     cacaccagcc ctaccaaagt tgaagctatt cgtgtaatgc agtcccctgt caacgtttcc      2100
     gagttacgtt cgtttcttgg aattatcaac ttttatggaa aattcgtccc gttcctgtct      2160
     gatgtctgtg agccgctgta tcaactcacc cgtgacaatg tcaaatggcg ttggtcgtcc      2220
     caatgtcaaa agtcttttga agaagtaaag tccttgttgt catccgcgga agttttggct      2280
     catcacgacc cctccattcc tattggcata gcttgcgacg cttccagtac cggaattgga      2340
     attgtgctct ttcaccgtta cgaagacggt tccgaaagac ccattgccta cgcatctaaa      2400
     atgctaacgg acacggaaaa gcggtattcc caaattgaga aggaagccct tgccatcatc      2460
     atcggagtca agaagtactt caagtttctg tgtggaagaa agttcatttt ggtcacagac      2520
     caccgtcccc ttttggcaat atttggcaac aaaagtaacc tgcaaccgta cgtcgctacg      2580
     cgcttgcacc actggaatct atacctaagt caattttgtt acgatatcga gtatcgtaat      2640
     accaaggatc atggaaatgc agacacgttg tctcgttttc cctcatcagc cgaagacccg      2700
     gatctcgttg atgaagaaat tgaatgtcaa gtcaagctca tcgcttcaga acagttatca      2760
     gtccttccag taaatgccaa agccatcaag tcagcaacag ctcgtgataa ggaattgtca      2820
     gaagtctaca agcttatcat gtccggttgg cccaatcaca tgtccaagca ggaagacctg      2880
     tacccgtacc acctgcgcaa ggaggagttg tcaattaccc aaggagtaat tatgtggggc      2940
     atcagaaccg ttatcccagt cggattacgt cagcagctgt tgtcagagct tcactccagt      3000
     catagtggaa tcgttaggat gaagtctctc gcccgtcagt acatttggtg gccaaatatt      3060
     gacgaggaca tcgaaaaagt atgcaaacag tgcacgcagt gctgtgaaaa tcgtcacaat      3120
     ccagcatctg caccccttca cccgtgggag tttccagaaa gaccatggca aaggatccac      3180
     atggacctcg ctggaccaat gcatggtaaa atgtggctac tcatcgtaga cgcacattca      3240
     aagtggcctg aggtgttctc catgaaccag gacaccacat caacagcagt cattcgtcgt      3300
     gttcgagaaa ccgtttgtcg ttacggtatt ccagaccaga tcgtcaccga taacggaaag      3360
     cagttcacgt ccaaggaatt tgaactgtac tgcagcaaca acggtattcg tcataccaca      3420
     agctccgctt atcatccccg ttccaacgga gaagctgaaa ggttcgttca aaccttcaag      3480
     tcatcgttaa aacatgctac aggagacgtg gagttcaagt tgcagcaatt cctcctcacc      3540
     taccgcatca caccacacgc aacaacagga gtttcaccag ctgagcttct acaaggtcgt      3600
     aaattgaagt cgcttttgga taatgttcgt ccagatgtca aaatcaatgt ccagaaatcc      3660
     cagcagcgtc aatgccagga ttacaacaag cgtgtgaaag caagaaacct gcaagtaagc      3720
     cagaaagttt gggttcaaac atattcgaag aaccaaccca aatggtcatt gggcaccgtc      3780
     atcaaaatcc tgggtcctgt cacttatctc gttttgttca acggattcaa gtataagcgt      3840
     cacatcgacc aaatcctgga agccgaccct ttgttacgcc caaacgaacc agttgaagtc      3900
     gcagtcgaga ctccagagat tccagaaggc gaaccggaag aagaccaacc tcctgaggat      3960
     cttggatcac cagcagcatc accgcaagct cgtcgttacc cgcagaggca acgccgaccg      4020
     actgccttct ttccaaattg aatgtatttt atgtatgtat ttgtgtcatg tcatttatgt      4080
     atcattgtta tgtttcatgt atgtctgtaa gtttcgaaat tgttaaaaaa atcgaaaggg      4140
     aggtaa                                                                 4146
//
ID   Gypsy-46_SiCu-LTR repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-343
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5123-5123 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 343 BP; 88 A; 74 C; 57 G; 124 T; 0 other;
     tgttgtatcc caatgcccca tgactggcac tgtcttcaaa gtccaagtcc atgaggcatg        60
     cacgcagtag tttgtcttgt gttttgtttc ttcttcagaa acgtgccgtt ctgtctggga       120
     gctcagtccc aactcattcc gtctttcact tcttgtccag agtgaatcgt cataattatt       180
     acttgcgtaa agtacataat attttgtcaa acacttaatt agtaattaat tgtaaactga       240
     cttattgtaa ttagttaact gaatcctttt gtagtaaagt cttagtgtgt gtatcattaa       300
     atcacgtcat cgtctgacct ctcatttaac tgcatacacc aca                         343
//
ID   Gypsy-46_SpEx-I repbase;    DNA;    INV; 4860 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4860
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4114-4114 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..1711
FT                 /product="Gypsy-46_SpEx-I_1p"
FT                 /translation="MMDVNALHKDELEFELACRGISDCRTVATMRKFLREI
FT                 LVREQSGESTISFKVPKSCIDNPGKEIILCENKLSEVITLISEVSQSPERS
FT                 FFRRIHSRLSHLSNRVKLIIPSETSDIERHLTLLKNIQDAMTSLQDLQQEE
FT                 NEEDDAISEHDKDVLQKSLGDEAIQIMEQLEKCRNTVKSAPKRDTEIYRNR
FT                 ATKPDVDDTDEPRTTAEKPNFCSRHPGLQRSSTFDNGFYKRKLVPIKDWGV
FT                 KFCGKGTVGVNAFLERIEELKEARNAADEDLFRYAIDFFEGEALIWFRANK
FT                 GSVSSWSQLVELLLDTFQQPYYQEELLEEIKRRTQSKQESVLIYIAIMQNM
FT                 FNRLPNPIPETQKLMILRRNLQPYFQKAICRDTFDTVSELTSVLRIVERTK
FT                 LSCDKFKEPSTGEHSLERDLAYNGSTLKTSQSEDVNQLTAIDDKGTPLTKC
FT                 WNCRVPGHRFRDCKRPKQRIFCYKCGRFGKTTNKCSCNAEEKGNVNSGSMP
FT                 ADRTPRN"
FT   CDS           1657..4824
FT                 /product="Gypsy-46_SpEx-I_2p"
FT                 /translation="GEGKRQFGVDASRSNSQKLSHSPSDDWQQWLQTISNF
FT                 FKTGNICNIEKLSKDNRYYAEIRILNQSFVGLLDSGATVSVISQRFAMRIM
FT                 KLGLSGHKIEKQMISTADGTYHTMDTVVHLPVELSGKYNVVDFYVMDNLKH
FT                 DIILGMNFFETFKLSIGVGKSIADITEINVTQPVISREDLSTSQRERLDKL
FT                 IEEMAAEIGKGLGRTLLIEHRIDTGDSLPIKHRQYPFAPPIMAELEKEIKE
FT                 MLDNDVIEPSISSWRSPVLLVKKSSGKNRLCLDSRQLNRVTVKDSYPLPRV
FT                 TTILDSLKNARFLSTIDLRSAFWQIPLEETSKEKTAFGLAGKGLYQFKVMP
FT                 FGLSNASQTQQRLMDRLFTPEFEGRVFAYLDDIVICDDNFDSHLNSLAYVK
FT                 NQLKKAGLTINLEKCVFARPSLKYLGYIVDKEGLRTDPDKVKAILEYPRPT
FT                 TYTELKRFIGLASWYRRFVENFAIVAAPLHELTKGGKKAKRITWNKEAEDS
FT                 FLNLKTALTSTPVLRVPDFSKPFSVQCDASNRGTGGVLIQIVDGLEVPVAY
FT                 TSRKLSERECKYSASERELLSVLHAVEQFRPYIEGSHFKVITDHSALQWLH
FT                 RNKDPHGRLARWAMRLQQFDYEVVHRKGKYNIVPDALSRAIEDEVNIIDVK
FT                 PEDKDEWYKSKEDLVLAGKSDQDWEVSQGQLWKYMKLKQFPHENDAWKQVV
FT                 PENLRQRILKECHDDPTSGHLGVKKSVNRARQRYFWPTLIQDMKKYVRQCE
FT                 VCAKYKPSQNKLSGLMGKQREVTEPFQIISMDLMGPFPKSKHGNTMLLVIT
FT                 CWFSKFCFLYPLKNGKTSHIAQILEEQIFLMFGTPSVIVCDNGKQFVSNQF
FT                 KDLALGYGVKLWYTPYYHPQANPTERVNKVIGSAIASYVEHNHKEWDKYIP
FT                 HIGHAIRTSVHEVTGKTPSYLFFGRETAVHGMRPYSFEPDEPVTFDKERFE
FT                 RSIAFRNKVYDEVCERMRQSHDINSERYNKRRRVCNYEVGDVVWKRTKFLS
FT                 NANQAFMSKLAPKFEKAIIAEKISKDVYKLKSPRGKDLGEWHSCDLKRLV"
XX
SQ   Sequence 4860 BP; 1590 A; 907 C; 1081 G; 1282 T; 0 other;
     ttggcgccca cgggttaact ggatagaaga tagacaaagc ttgttgtatt ttttttgtat        60
     gtaggtagct gtccttataa ataatgcgta attttaaatt taatttaatt ttgtaaagaa       120
     attttataca tttaatgcag ttgtctagaa cagatatcta aaacctatct tgagttgtcg       180
     tctgctattg agtattaatt taatgatgga tgtaaatgca ttgcataaag atgaacttga       240
     gtttgagctg gcttgtcgcg ggatttctga ttgtaggacc gtggcgacta tgcgtaaatt       300
     tttacgggaa attttagtgc gagaacagtc gggtgaatca actatttcct ttaaggtccc       360
     taaatcttgt attgataacc cgggtaaaga aataattctt tgtgaaaata aactctcaga       420
     agtaattaca cttatatcag aggtatcaca aagtcctgag cgttcgtttt ttagacgcat       480
     acactcccgc ttgtcacatt tatcgaaccg tgttaaactc atcatacctt cggaaaccag       540
     tgatattgag agacatttga cattgcttaa gaacatccag gatgccatga cgtcactaca       600
     ggatcttcaa caggaagaga atgaggaaga tgatgctatt tccgaacatg acaaagatgt       660
     cttacaaaaa tcattgggtg atgaggccat acagataatg gagcaattag aaaagtgccg       720
     aaatactgta aagagtgccc caaaacgtga cacggagata taccgaaatc gtgccacgaa       780
     acctgatgtt gacgatacgg atgaaccgcg aacaaccgca gagaaaccta atttttgttc       840
     acgtcatcca ggtttacaaa ggtcctctac atttgacaat ggcttctaca aacgaaaatt       900
     agttcctata aaagattggg gtgtcaaatt ctgtggaaag ggtaccgtag gtgtgaacgc       960
     gtttttggaa agaattgaag aacttaaaga agcacggaat gcagccgacg aagacttgtt      1020
     tcggtacgct atagactttt tcgagggcga agccttaata tggtttaggg ccaataaggg      1080
     gtcggtatca agttggtctc aattagtgga gcttctgttg gatacgtttc agcaacctta      1140
     ctaccaggag gagcttttgg aggagattaa acggaggacc caaagcaaac aggaaagtgt      1200
     tttaatttat atagccatta tgcagaatat gtttaatcgt ctgccgaatc ctattcctga      1260
     aacacaaaaa ttgatgatac tcagaagaaa cttacaaccc tactttcaga aagccatctg      1320
     tcgagacaca tttgatacag tgagtgaatt aacgtcagtt ttgagaatag ttgaacgcac      1380
     taaattaagt tgtgataagt tcaaggaacc tagcactggt gaacactccc tagaaagaga      1440
     tttggcatac aacggaagta ctttgaagac atcacaaagt gaagacgtga accagctgac      1500
     agccatagat gataagggaa caccactcac taaatgctgg aactgcaggg ttccaggaca      1560
     tcgcttcagg gactgtaaaa gaccaaagca aagaatcttc tgttacaaat gtggacgttt      1620
     tgggaaaacg acaaataaat gctcatgcaa tgctgaggag aagggaaacg tcaattcggg      1680
     gtcgatgcca gccgatcgaa ctcccagaaa ttaagtcatt ctccttcgga tgattggcaa      1740
     caatggctac aaacaatttc aaatttcttt aaaacaggca acatctgtaa cattgagaag      1800
     cttagtaagg acaaccgata ttatgccgaa ataagaattt taaaccagtc gtttgtagga      1860
     ttactggatt ctggagcaac cgtctctgtg atttcgcaga gatttgcaat gagaataatg      1920
     aaattgggac tttcaggtca caaaattgag aaacaaatga tttcgacggc tgatggcacc      1980
     taccacacaa tggacaccgt tgttcacttg ccagttgagc tttcaggcaa atataacgtg      2040
     gtagacttct atgtcatgga caaccttaag catgacatta ttttgggcat gaattttttt      2100
     gagacattta aattatcgat cggggtggga aaatcgattg ctgacattac ggaaattaac      2160
     gtcacgcaac ccgtaatttc gcgtgaagac ctttcgacat cacagagaga gcgcttggat      2220
     aagctgatag aagagatggc agcagaaatc ggtaagggtt taggtagaac tttgttgatt      2280
     gagcatagaa ttgatacggg agacagttta cctatcaaac atagacaata tccatttgct      2340
     cctccaatca tggcagaact agagaaggaa attaaggaaa tgctggataa tgacgtaata      2400
     gaaccttcaa ttagctcatg gcgttctcca gtattactcg taaaaaaatc ctcaggtaag      2460
     aatcgcctgt gtctcgacag ccgtcagttg aacagggtga cagtaaagga ctcttatccc      2520
     ttacctaggg ttacaacaat attagacagt cttaaaaacg cacgatttct ttctaccatt      2580
     gatttacgat cagcattctg gcagatacct ttagaagaaa ccagcaagga aaagactgca      2640
     ttcggacttg ctggaaaagg actttatcaa tttaaggtta tgccgttcgg gttaagcaat      2700
     gcctctcaaa cacaacagcg gttaatggat cgtttgttta ctccagaatt tgaaggcaga      2760
     gtatttgcat atttggatga tattgtcata tgcgacgaca acttcgatag ccatttaaat      2820
     tcattagcat atgtgaaaaa tcagcttaag aaagcaggat taactatcaa cctggagaaa      2880
     tgtgttttcg cgagaccgtc cttaaaatac ttaggctata ttgttgacaa ggaaggatta      2940
     cgtacggacc cggacaaagt aaaagccatt cttgagtatc ccaggccaac tacttacacg      3000
     gagctaaagc gttttattgg cctagctagc tggtatagac gatttgtaga aaattttgcc      3060
     attgttgcag ctccactcca tgaactaacc aagggaggaa aaaaggctaa acgtataaca      3120
     tggaataaag aagctgaaga ttccttctta aatctaaaga ctgcccttac ttcgacacca      3180
     gttctaagag tgccagactt ctcaaagccc ttttcggtcc aatgcgacgc ctccaacaga      3240
     gggactggtg gagttttaat acagatagtt gatggtcttg aggtacctgt tgcttacaca      3300
     agccgaaaac tatcggaaag ggaatgtaag tactcagcat cagagcgaga actattaagt      3360
     gtcctgcacg ccgtagaaca atttcgccct tacattgaag ggagtcactt taaagttata      3420
     acggaccata gtgctcttca atggctacat cgcaataaag atcctcatgg gcgcttagca      3480
     aggtgggcca tgcgcttaca acagtttgat tatgaagtgg tccaccgcaa aggcaagtat      3540
     aatattgtac cagatgccct atcaagagcg attgaagacg aagttaatat aatagacgta      3600
     aaaccagagg acaaagatga atggtataaa tcaaaagaag acttggtcct ggctggaaaa      3660
     agtgaccagg attgggaagt tagtcaaggg cagctgtgga aatacatgaa attaaaacag      3720
     tttccccatg aaaatgatgc ttggaaacag gtggtaccag aaaaccttcg tcaaaggatc      3780
     ttaaaggaat gtcacgatga tcccacatct gggcatcttg gcgtgaagaa atcggtcaat      3840
     cgcgcaaggc agcgctattt ttggccaact ttgatccaag atatgaaaaa atacgtacgg      3900
     caatgtgaag tgtgtgcaaa atataagccc tcacaaaata agctatcggg tttgatgggg      3960
     aaacaacgag aagtcacaga accctttcaa atcatatcaa tggatctgat gggtcccttt      4020
     ccaaaatcta aacatggcaa tacaatgctg ctagtcataa catgctggtt cagcaaattc      4080
     tgttttctat atccgctcaa aaatggaaaa acatcgcaca tagctcaaat actggaggaa      4140
     cagatatttt taatgtttgg gacccctagt gtcatagtgt gtgacaatgg caagcagttt      4200
     gtttccaacc aatttaagga tctagcatta ggctatggtg taaaactgtg gtacactcct      4260
     tactatcatc cacaagccaa tcccactgag cgggtaaaca aagtaattgg ttcggctata      4320
     gcttcttatg ttgaacataa tcacaaggaa tgggacaaat acataccgca cattggacat      4380
     gcgatcagga catcggtcca tgaagttacg gggaaaacgc catcatactt attttttggg      4440
     cgcgagacgg cggtacacgg tatgagaccc tatagttttg aaccagacga accagtcaca      4500
     ttcgacaaag aaagattcga aagaagtata gccttccgta ataaggttta tgatgaggtt      4560
     tgtgaaagaa tgcggcaatc acatgatatc aacagcgaac gctataacaa gagacgtcgt      4620
     gtatgcaact atgaagtagg ggacgtggtt tggaaacgca ctaagttcct ctcgaatgcg      4680
     aaccaagcct tcatgtctaa actggctcct aagtttgaaa aagcaatcat agcagaaaag      4740
     atatcgaaag acgtttacaa gctaaagagt cccagaggca aagatttggg agaatggcat      4800
     tcctgtgacc ttaaacgttt ggtttgaatc cggttggatt ctttagagga gaggggatgt      4860
//
ID   Gypsy-46_SpEx-LTR repbase;    DNA;    INV; 921 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-921
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4175-4175 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 921 BP; 242 A; 162 C; 196 G; 321 T; 0 other;
     tgtagtgatc cgtattttga tgtgcgagtc tatgactaga tggcgttact aggctcacaa        60
     tatgctaata aataatcatc tccgagagta attttattga caaattgagg gttagagaaa       120
     aattatgata ccgcgggtaa acggaaaaag gagggcacgg agacagaacg gacgatcgct       180
     cggatgacga cgcaagttcg gctcatggtc attgttcctt tagagtaacg tgatttagta       240
     atttgtcttg atcattatcc aagaaattcc acgcagtgcg tattgtgatt gtgaattgtg       300
     agcgagtaaa agcagaaacg gggtaagtgt ttgcgcctat tctacgaagt ttgaactgga       360
     caattagttt tttttgcaag gctgaccgcg ctcatttgtc ctcagcttgc ggaaacgccc       420
     ttattaaccg ggaccggatc ttaagggttg agacccgact gaaatatatg tacgctccat       480
     agcacgtatt gattgtctaa ttcgcaacta aagacaagtg aagacatagc tgagtggctt       540
     agtaataaac tgccgatatc tggtctcgag ttcgagcctc actcatctca tcttttggcg       600
     atgtgtttta gattttaatt ttgttttact gtgtaatcgg ctttggccat attgtatttt       660
     tttttctctt gtatttatat ttcttttcat aattgtatgt tttatgggat aaccaagtac       720
     agttatttag gtacgtaatc atattccgtc ctttacttct gtttttttgt cttaccgtta       780
     gtttgccatt ttgttaacta tattgtgttt gcgttggacg agttatgtac ctgcttaaaa       840
     ttatgaatta aaaattttgt gagtacccta cactttcttt gtcttctaac attcagcacg       900
     cctagaaccc aggtcattac a                                                 921
//
ID   Gypsy-46_TrVa-I repbase;    DNA;    INV; 9733 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9733
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 291-291 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1251..2831
FT                 /product="Gypsy-46_TrVa-I_1p"
FT                 /translation="MYRDGYSCTRNFNLRRPNANQQHHARRAEDIVVDIPP
FT                 PDLSLNENNVVDLPRQVDLNLNFDLPNPWDNPFQAFNQAPFQPSASQVIAS
FT                 NVNFNYEQVNNPLIADNSNNNNAFVHHSAVPNESFHQGQLPQALLPNYANQ
FT                 AVLPNYSNQYQRVSPNEQVHQMPVSQASVPNDFNEYQPVQSHERPPCVPAR
FT                 QSASTQSQPPRANGAHMRCQSPMQAPINGDPFRELVEELRELKVSLDARFN
FT                 SVQSEVHSVRRMVVGDSGVEAVGAAGMEANQAVFRNRFGSCTSLSNERHGA
FT                 GRPRHNNYLQLRDLPTFDGNMKNLHPKSFIASISLYFQYNDSPFEVQLLEL
FT                 GRLLKGRAAAWFDINMPKIGSFNHFKERFFNSFWGPSHQNEVRSRVFAKNR
FT                 YQPSDGSNYISMTDYFTDLVREASFLDVLIPEEALVDHIAQHFPENVRLML
FT                 VASNTLSIDEMERQLQRVDRSLGSGPSFVQKNSSQNYPNRNRHFDKNTPRV
FT                 NMVGAEFDTSVAPPQISTSVNNNLTTHSLNE"
FT   CDS           2762..7351
FT                 /product="Gypsy-46_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YISGSATNFYFSKQQLDHSFFKRIECWSGGVSDKKCA
FT                 STSGPARSNEIDSIFTHDRFKFLVYQVKISVCSHSHSLNFCAVVPQDMYIP
FT                 FSGTQNSKVQIKPISELIVPNCQSYFEKIKAIDLSEYHNLLLLFQPGLLST
FT                 SYDPASQEFSDIFIKSMSDLSTKTKIIACELISYPGNQKHSNCISKLNNSL
FT                 VQLLKPENLNLPIIKTNDLLSKNPGIRNKFQLFNLLLDECRSIFIEQNSHF
FT                 LEPTVGAVEEHFLLDEPDTPHSLNKRFKSPYIQCLISGVNCEMMVDTGSEV
FT                 TLVSSEFFEHLQQMVSKKFDILPTNGLHLRGVTGVRSKPVKFQTFLPLTFG
FT                 KKTFYKSFLVVDAVNVPAILGIDFLTQFKALLDCTNSSLSLLDGEVHVSFT
FT                 SYSKNVIGQVSIEEDSSKPNLYILADSHGRGLEDTLRCDLTHFSVKVKFYP
FT                 GEKFNCILKNVKNLNVQENDILLICGGTNNVYSDKSDERLISEFDLSPLKE
FT                 VKGNILFLNIFQRFDLHGVKRKIINLNESLSKQLESLPNCSFLRTDYLFNR
FT                 RDFTRHGLHLNLEGKKKLCSFITDRANSLIGNSLPLNDSILLDTFFIEETT
FT                 VSEDESVPSDSSSTFTVSVSQKDILSDQNIWSKIEPNEIPQPDKLKLFELI
FT                 KQYRDVFSEDPGECSVYVAKFRLNDDEVFVKRSYAIPIAKRAMVRKEIDRL
FT                 LTLGVIERSSSPYSNPIVPVIKKDGSCRLCLDARFLNSKLISDAESPEKVD
FT                 ELLFKFHNPEFISCLDCTAGFLQIPLASESRDVTAFCFEGRNYHFARLPFG
FT                 TKVSMQHFIKATDVALGPEFDDFLSRYVDDFRVISRSFDLHLEHLGRVFEA
FT                 FRKAGISLNFIKCTFLADEVDFLGHILSKNGIRMNPEKVAEIMQFPEPKNQ
FT                 NILQKFLGLVNYYRKFSMKHAALCEPLFNLLKKDTPWIWGSTQKDNFEKIK
FT                 ECFVQDVILAYPRFDKMFYLNTDASLSTVAGELFQYDSDGDRRPIAYHSRT
FT                 LSSAERNYTITEIELLSIVSCCQKFQVYLAGHPAIVLTDHLALSFLNSCTL
FT                 TGGRLARWALYLQQYDLKFEYIKGSENIVADTLSRYPPNFHQLAPNDIEIN
FT                 VSTSQVAGTKQLKIKFSNLADLQKSDPLFGPIYAKVSNNSPIESKHSFILH
FT                 NDILFTKHFQNSDYKVCIPSACEDDFLELAHVGIGHFGYRKTYEYMKLFSY
FT                 FPKMDEKTRKFTSSCIECQKSKAPPKYYHSPLGTVQSDQILDLVAVDLFGP
FT                 LPKAKGNFAYIFVLLEVFSKYVKLYPLRRATGVNVTRKLLENYINDVGHPK
FT                 VVLSDHGPAFKSKIWHSRLKANDIIPTHSSVYHPSANPSERYMKILGNFLR
FT                 IHCNGNHSSWIKHLGLVEDSINQTYNASTGCVPYTLVHGKKPSHCLSDLIS
FT                 FPEVEEKVDLDSLVQKVKNNTQARANQRKAKHDSRFPLLSLRVGDKVLVRQ
FT                 HHLSNAAYNESKKLFYLYDGPFVIHSITRNKAYVLADPETQKIIGTYNMAL
FT                 LRPFISRSQNASDA"
XX
SQ   Sequence 9733 BP; 2703 A; 2078 C; 1810 G; 3142 T; 0 other;
     gaaatggcgc ctaacaaacg cggggccaac gaattataat cgtttggcca acccttcaac        60
     cccttagtgc aatgtgtttc attgatattg tctcatctta tgtgttcatc tcgtttattt       120
     tgtcgtccat agccatgtga cccgggtacc catgtttagg cttccgcctt cttagcatcg       180
     gatcgtatca aatcgacatc tgctcaaggc gatcctgctg ggatttagca aggagaaatc       240
     ggtgcggttt ttagattcgt ttcgtttttc caaattaatc accaaaatcg agcaattggt       300
     gaagttgaat gaataattaa gattcgcatg ggtgaatgtg tgtgtttcgc gatggtggtg       360
     tgtgtgcgca acgcatcaac cgactcgaca tcgttcatcg aagccaacag ccgaatcacc       420
     ggcagtcacc agtgtttatt ttgatctggt tctatcaaca gttgttcaat tatacctctc       480
     cacggtattt tctctccgta gctcctcaga gcttgtcttc ggtttttccc tttatttatc       540
     ttcggaatgt tcctgattat ggaatgccaa cgtcactgtg ccagggacga caacccttgt       600
     gtttttaaaa ttcatcgatt tgtggcgaac cagtcacccg atcaaatcgt cgtggtacct       660
     gcggacagtt tgtttatttt ttttctgttt actctctcct caagagttct tatcaagctt       720
     atgttatttc aattttcaaa atttaatctc aggatatagt gtccaaccct aaatttggga       780
     tgtcatcgtt aattaagcag cctcggaatc tttttcctcc aagtttcttt gttaaataaa       840
     cttcaccctg gagggtatct acaaacatat caaggcagtg aatgcccgtt cccgcactac       900
     cacaaggatg gaacttcagg cgatttcacc gaatgactgg atcgaagcaa tggtcttgtt       960
     ccaaacaaaa tactgatcaa ggacttcatc attttctgtt gcagcctttt ggattttttc      1020
     tcggaaactg gatctacggc tgcgctgatt gggtaactct gtattgtcta tatatttttt      1080
     cctttttttt ttatgcgtca aacgcaataa tcctaagttt gctgtattct accctaaaac      1140
     aatttgtttg tttttgtctt tagttttttt tttttgtgtg tgttatcaaa taagcatatt      1200
     gctttaccag ggttctcctt gtattttagc cccatcatta tttattcaaa atgtatcgag      1260
     acggctactc atgtacccgc aatttcaacc tgcgacgacc caatgcaaac cagcagcatc      1320
     atgctcgtag agctgaagat attgtggtag atatacctcc acctgactta agtctcaatg      1380
     agaataatgt agttgatttg ccgaggcaag tcgatctaaa cttaaacttt gatcttccaa      1440
     atccctggga taacccattt caggctttca atcaagctcc ttttcagcct tctgcctctc      1500
     aggtgatcgc ttcaaatgtt aattttaatt atgagcaggt taataatcca ttgatagccg      1560
     ataattccaa taacaataat gctttcgttc atcactctgc agtgccaaat gagtcgtttc      1620
     atcaagggca gttgccacaa gcattattgc caaattatgc aaaccaggca gtattgccaa      1680
     attattcaaa tcagtatcaa cgggtcagtc ctaatgagca agtccatcaa atgcctgtgt      1740
     cccaagcatc agtacccaat gattttaatg aatatcagcc tgtacaatcg cacgagagac      1800
     cgccatgcgt gccggcccga cagtctgctt cgactcaatc ccaaccacct cgagccaatg      1860
     gtgcccatat gagatgccag tctcctatgc aagcccccat taatggagat ccatttaggg      1920
     aacttgtgga agagttgaga gagcttaaag tgtctttgga cgccagattc aattcagtcc      1980
     aatccgaagt ccattctgtg aggcgaatgg ttgttggtga ttctggagtg gaggctgtcg      2040
     gggcggcagg catggaggcc aaccaagcag tttttagaaa tcggtttggg tcatgtacca      2100
     gcttgagtaa tgaacgccat ggtgctggca gacctcgcca caacaattat ctccagttaa      2160
     gagatctgcc gacgtttgat ggcaatatga agaacttgca tccaaaaagt tttattgcaa      2220
     gtatcagcct gtattttcaa tataatgatt ctccgtttga agttcaactg ttggaacttg      2280
     gtcgcctatt gaaaggtaga gcggcagcct ggttcgatat aaatatgcca aaaattggta      2340
     gtttcaacca ttttaaagaa aggttcttta actccttttg gggaccatct catcagaatg      2400
     aggtgaggtc ccgagttttt gccaaaaata ggtatcaacc gtctgatggc tcaaattaca      2460
     tttctatgac ggattacttc acagacttag tgcgggaggc atcattttta gatgttttaa      2520
     tccccgaaga ggctctggtg gatcacatcg ctcagcactt ccctgaaaat gttagattaa      2580
     tgttggtggc ctcgaacaca ttgtcaattg acgaaatgga gcgtcagctt cagagagtcg      2640
     accgttctct gggttcggga ccatcattcg tgcaaaagaa ttcatctcaa aattatccta      2700
     atagaaatag acattttgat aaaaatactc ctagggtgaa tatggttggc gctgaatttg      2760
     atacatcagt ggctccgcca caaatttcta cttcagtaaa caacaacttg accactcatt      2820
     ctttaaacga atagagtgct ggtctggggg ggtgtctgac aagaagtgcg cctcaacctc      2880
     tggcccagca cgcagtaatg aaattgattc cattttcact catgaccgat ttaaattttt      2940
     ggtttatcag gtcaaaatct cagtttgttc gcacagccat agcctaaact tctgtgcagt      3000
     agtgcctcaa gatatgtaca ttccatttag tggaactcaa aattctaagg ttcaaatcaa      3060
     acctatttcg gaattgatag tgcctaactg tcaatcgtat tttgaaaaaa tcaaggctat      3120
     tgacctttca gagtatcata acctcttact tctttttcaa cctggattgc tttctacttc      3180
     ttatgatcct gcctctcagg aattttccga catttttatc aagagtatgt ccgatctatc      3240
     tacaaaaacc aagattattg cttgtgaatt gatcagctat ccaggaaatc aaaaacattc      3300
     taactgtatt tcaaaactaa ataattcttt ggttcagcta ctgaaacccg aaaaccttaa      3360
     cttgccaatc attaaaacta atgatcttct gtcaaaaaat ccaggcataa gaaataaatt      3420
     tcaattattt aacctgcttt tagatgaatg tagatcaatc ttcattgaac aaaattcaca      3480
     ttttttggag ccaactgtgg gtgcagttga ggagcacttc ttgctagatg agcccgatac      3540
     cccccactct ctgaacaagc gattcaagtc gccctacatc caatgtctta tttcaggtgt      3600
     caactgtgaa atgatggtcg ataccgggag cgaggtcaca ttggtgtcat ctgaattctt      3660
     tgaacatctt caacaaatgg tttccaaaaa gttcgacatt ttaccaacca acggtctaca      3720
     tttgcgtggg gttacaggag ttagatcaaa gcccgttaaa ttccagactt tccttcctct      3780
     cacttttggt aagaaaacct tctataaatc attcctagtt gtggatgccg tcaatgtgcc      3840
     cgcgatcctt ggtatcgact ttctcacgca gttcaaagcc ctactcgatt gtacaaattc      3900
     ttccctatct ctcttggatg gcgaagtaca tgtgtcattt accagctata gtaagaatgt      3960
     cataggtcaa gtctccattg aggaagactc aagtaaacca aatctatata tcttggcaga      4020
     tagccatggt cgtggcttgg aagatacttt aagatgtgat ctgactcact ttagtgtaaa      4080
     ggtaaaattt tacccaggag aaaaatttaa ttgtattttg aaaaatgtca agaatttaaa      4140
     tgtccaagag aatgatatcc tcctaatctg tgggggaacc aacaatgtct atagcgacaa      4200
     gagcgacgag aggttgatca gtgaattcga tttaagtccg ctcaaagaag ttaaaggtaa      4260
     tattctgttt ctcaacattt ttcaacgttt tgacttacat ggagtgaaac ggaagattat      4320
     caatcttaat gagtctttat ccaagcagct agaatcgtta cctaattgtt cgtttttgag      4380
     aacagactat ctttttaaca ggagagactt cactcgtcat ggcctccatt taaacttaga      4440
     aggcaaaaag aaactatgtt ccttcatcac agatagagcg aattcgctga tcggcaactc      4500
     gttgcccttg aacgactcaa tcttattaga tacttttttc attgaggaaa ctacggtttc      4560
     tgaagacgag agtgtcccat cggactcttc ttcaaccttc acagtcagtg tatcccagaa      4620
     agatatcctc tctgatcaga atatctggtc aaaaatagaa ccaaatgaaa tacctcaacc      4680
     agataaacta aaactctttg aactaatcaa acagtatcga gacgtcttct cggaggatcc      4740
     gggggaatgc tctgtatatg ttgcaaaatt tagattaaac gatgacgaag tttttgtaaa      4800
     aagatcttat gcaataccta ttgcaaaaag agcaatggtt cgaaaggaaa ttgaccgtct      4860
     tttgactctc ggagtcatcg aacgatcctc tagtccttac tcgaacccga tagtcccagt      4920
     aattaagaag gacggcagct gcagactctg cctagatgct cggtttctta actctaaact      4980
     aatctccgac gccgagtctc ctgagaaagt tgatgaacta ttatttaagt ttcataatcc      5040
     ggaatttatc tcttgcctag actgtactgc tggtttttta caaatccctt tagcatcaga      5100
     gtcacgtgac gtaactgcct tttgtttcga aggacgaaac tatcacttcg cgcgtttgcc      5160
     cttcggaaca aaagtcagca tgcagcactt tattaaagcc accgacgtag ctctagggcc      5220
     cgaatttgat gattttctta gtaggtacgt cgatgacttt cgagtcatta gcagatcctt      5280
     tgatttacat ttggagcatc tgggcagggt cttcgaagcc tttcgaaaag ctggaatttc      5340
     gcttaacttc ataaagtgta ccttcctagc ggatgaggtg gactttctgg gacacatcct      5400
     ttccaagaat gggattcgta tgaacccaga aaaggtggct gaaattatgc agttccctga      5460
     accaaaaaac caaaatatcc tgcaaaaatt cctagggtta gtcaattatt atcgtaagtt      5520
     cagtatgaaa catgctgccc tgtgtgaacc tttatttaat ctgttaaaaa aggatacgcc      5580
     ctggatctgg ggatccactc aaaaggataa ttttgaaaaa atcaaagaat gttttgtcca      5640
     agatgtaatt ttagcctacc ctcgatttga caaaatgttt tacctaaata cggatgcgtc      5700
     tctcagcact gttgctggag agctcttcca gtatgactcc gacggtgatc gtcgacctat      5760
     tgcctaccac agtcgaacct tatcctcagc ggaaaggaac tatactataa ctgaaattga      5820
     actgttatca attgtcagct gttgccagaa atttcaagtc tacctggcgg ggcatccagc      5880
     aattgtgctg acagaccatc tagcattatc ttttctcaac tcatgtaccc ttactggagg      5940
     acgtttggcc cgatgggctc tatacctcca gcaatatgac ttaaaatttg aatatattaa      6000
     aggctcagag aatattgtgg cagatacatt gtccaggtat cccccaaact tccatcagct      6060
     tgcgcctaat gatatagaaa taaatgttag cacttcacaa gttgcaggta ctaagcagtt      6120
     aaaaattaaa ttctcaaatc tcgctgactt acaaaaatca gatcctctct ttggccccat      6180
     ctatgccaaa gtatccaata acagccccat tgaatctaag cactctttta ttttacataa      6240
     tgatatcttg ttcactaagc atttccaaaa ttctgattac aaagtctgta ttccatccgc      6300
     ttgtgaagat gatttcctcg aactcgccca tgtgggaatt ggacattttg gatatcgcaa      6360
     aacttatgaa tacatgaaac tgttttcgta ttttcctaaa atggacgaga aaactagaaa      6420
     atttacgtcc tcttgtattg aatgtcaaaa gagtaaagcc cctccaaaat attaccattc      6480
     ccccttgggc acagttcagt ccgatcaaat tttggatcta gtggcggttg acctttttgg      6540
     accacttcca aaggccaagg gcaattttgc gtatattttt gtactattag aggtgttctc      6600
     taagtatgtc aaactatacc ctcttcggcg agccacaggt gttaatgtga cccgcaagct      6660
     gttagaaaat tatattaatg atgtaggtca tcccaaagtg gtattgtctg atcatggccc      6720
     agcctttaag tccaaaatat ggcattctag attaaaagca aatgacatta ttcctactca      6780
     ctcgtctgtt tatcatccta gtgcaaaccc ctccgagcga tacatgaaaa ttctaggcaa      6840
     ctttttgcga attcactgta atggtaacca ctcctcgtgg attaagcacc ttgggctcgt      6900
     cgaagacagt ataaaccaaa cttataatgc tagcaccggt tgtgttcctt acactttagt      6960
     ccatggcaaa aagcccagtc attgtttatc agatcttatt tctttcccag aggtcgaaga      7020
     aaaggtggac ctagactctt tggtccaaaa ggtaaaaaat aatacgcaag caagggcaaa      7080
     ccaacgaaag gctaaacatg attctaggtt ccctcttttg agcctccgag tcggcgacaa      7140
     agtacttgtc cggcaacacc atctttctaa tgcggcttac aatgagagca agaaattatt      7200
     ttatctttat gatggaccct ttgtcattca ctcaattact agaaacaaag cctatgttct      7260
     tgcggatccg gagactcaaa agatcattgg aacttacaat atggcattgc tcagaccgtt      7320
     tatttccaga tctcaaaatg caagcgatgc ttaacgttat gattacggcc tcttcagcca      7380
     gtttaatgta atagtttccc ttgtctggct gcccattgcc caaacatctc gaatccaatt      7440
     aaactcagaa gcccaaatat ggctctgaat tgctcaacaa atgcccggcc aaatgaccct      7500
     tactgcttta agctttcact taactaccgt gtatttgtcc ccctttcctt ttttttttct      7560
     tttatctttt tttattaatt gcattagatg taagaatacc cctaatttat gtgctgtgat      7620
     gataagaagc tggacaaaat ctttgaaaaa ttttactcga gaaactctca gtgtcatcat      7680
     tatcaatatt tcctaaacct gttcatctta tctttccaac caaatcaagt gacgccagcc      7740
     gtcagtccta aatttattta tttatttttt tttttttttt ttgctcgtat aaattatact      7800
     tactcaggta ggtgactctg atatcgttga gaccccttaa agcacttctc cgaaatatgt      7860
     gagaaacaat cgcacgtttt ctcggaggcg atgttgtttt tcttttattt cggagaaggg      7920
     gggggtcagg ccatgatatc attgggaccg cactgatctt atacgtcaca gaacattaat      7980
     caataggcaa tcaatatcat gtaaatagct atttttttta tcacccctat gttttaagtc      8040
     ataggaccta ttagatttaa gaaatcccac cgtcttatcg ggagatattt tcttccccct      8100
     tgtcatatgt gtgttcttat tttttctttt tttgtctctg ttcagacatg ttttgattta      8160
     tatttttttt gtttatctct gccctgagac atatcaaagg aacacaactc ctaaatttaa      8220
     acctcaaagt tattaacctt tttctttttc aaaattcatg ctcgtcagaa aatgtcttag      8280
     cctctccatc agcctagctt tggtatattt gcactcaagc ttaagtatca atccaacatc      8340
     aaacatttgg taagaggcaa atgttttact gagtgtctca tgatttcatg cgcagtagtc      8400
     catgctcatg cttggattgg tgctcatgaa ttcatgaagt atcccttgtt tttttgtaat      8460
     aatcccgatt ggtaatctcc tgccaatgaa ttgttttcta ttttttgtac aattgttgtc      8520
     cccgtccctt ctcgctgcac tcaggtgtaa ccgcggtcga ggcattagtt ccgctgcggc      8580
     ctggacggac ttaccccccg cctccaggac cccgtaagtg aaaatttccg gactccactc      8640
     acggaggcat ctggctctaa tgggaacaac cgtcatgagt gtcttccgag ctagatacct      8700
     gaatatgtcg tagccgagct attatttttt attttttttt gccctggctg ccaatgtctc      8760
     ctttttttat ctgtttagta ggatgagcat cgaaaggctt atcatgatgc tgccttgggt      8820
     agctccctgt caaaatttct atctcgatct ttactttttt tacacagtca aaattctatt      8880
     tggtaccgca ctctttaatg ttagcagtat gactgcggga atttcctccc gaaacagtta      8940
     acattaaaat cacatcacgg gtctggtgtg atatgagttc ccgaaatccc ttttgataca      9000
     tagccattca tatagaatgg gacccaaaca atttagccaa caaagttgat gcgaaaaatc      9060
     ttgatttaaa attttgtgat tgtttatact ggacatctgt agtttctagc tatggcaggt      9120
     ttctggcggc agagaaatca ctattcatcg tgtaaatttt tattaacccc atactgacca      9180
     gttttgtttc aatttaacga aacatccttt ctttccctct tcaattcatt tagtaatttt      9240
     gtactctttt gtatctttat tcatgcaaat ttctactctt aattcaaatt ctttatatat      9300
     ttcctttttt ttcttccttt ttttttttta cacctaatgt ttttccgaaa tgtccttcag      9360
     atttgcttta tttcaactta cctcagtctt agtattttat cggtgtctgt gatactatgt      9420
     ttagaataga cctaaccttc tgttgtgtcg ttgtaatttg gaaaaatgtt ctgttgttac      9480
     taatgttaag taattgttgt tctctaattc ttattatctt taataaacgg ctaaaataag      9540
     aaaaagaaaa tagaaattgg gaaatgttcc ctagctgatc gattcgacgt aatatcaatt      9600
     gttttgattc gggttgccag ggtttcttct gctcggggaa gtggtgtttt tcggagaagc      9660
     cactcttggt caggccaaag tcttggttct attcgaatcc attcagtgtc cagcccaaga      9720
     gtggggggta atc                                                         9733
//
ID   Gypsy-46_TrVa-LTR repbase;    DNA;    INV; 731 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-46_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-731
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 350-350 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 731 BP; 150 A; 153 C; 178 G; 250 T; 0 other;
     tgtagcgtgg aggttctctg ctgacatcag attcgccttc atctggagcg gatgcaactt        60
     gttcggctct gcgaatgagc tgggggtgcg ccggtccgga tggaggggat tctgttggca       120
     gtcgggggtc ccattaactg atagctccca acattgaata actcatcgat cctcgggggg       180
     atgaaattct ggtactctta aatgattgtt ttttttaaat gatttaatat tctccctttt       240
     tcccttcgat cccgcgtttc ttgtttgtgt tcagtggtgc atcactgttc ctctctagtt       300
     cagtgctgca tcactgttcc tctctaggga gacccctgcc ctgattggat ggtggagtgg       360
     cgtgatccta ccactggcca atcagggacg gcgtctcttg aacctagagc ttgaggcgtg       420
     ggttcgggga gagaaagagt ttcttttttt acttcgagtt ttgtcttccg tgcaacaggt       480
     gtgtagccta aaaaggagtt cctccttttt ctttttattt ttattagata atgtgaatta       540
     atttaagggc cggtcccatt atgggattcg gtttaattgc tctttaaatt cggtcggtca       600
     gttggggaaa attctaattt caaagccaaa gataaattca gtgtagtgat ttcctcctct       660
     acctccttca tttctttctt ttttcggtaa gggacgtgat gtgataaaaa atcaactagc       720
     gtcacccttc a                                                            731
//
ID   Gypsy-470_AA-I repbase;    DNA;    INV; 5696 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-470_;
KW   Gypsy-470_AA-I; Gypsy-470_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5696
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5696
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5696 BP; 1681 A; 1220 C; 1211 G; 1584 T; 0 other;
     ttggtgaccc cgacgtgata ttcggttcga agtactttcg gttcgctcgt gtatcgcgag        60
     aaaaatcgct tcttctggtg ccactccacc ataacctcaa atcgacacga tgaatttgga       120
     aaacgaagca cagaacgtga accatcaaca agcagtcgcc gtgaatcaac aaggagctac       180
     cgctgcagtt tcggtgaaac ttccggaatt ttggaaaact gatccggaaa tgtggttcgc       240
     ccaggctgaa gcacagttta tcctggggaa cataacaaaa gatgacacca aattttacca       300
     cattgtagcg aagcttgatc agtcggttat ttgccatgta gccgatctgg tatcgaaccc       360
     accacaggcc gacaaataca aaaatattaa ggatcgcctg gtttcccgct ttgcgctttc       420
     accgcaagta cgcttggaac gtctccttgg atcatcggat ctcggcgaca tgcggccgac       480
     tcacctgctt gctaaaatgc aagaattggc agcaggtttg aacgtcaacg atgatctctt       540
     aaagatgttg tttctccagc gtatgcctca tcacattcga ccagtattga ctatcagcga       600
     cggaacattg cccaagctgg ctgaaatggc agataaactg actgagactc cacgagtcgc       660
     tgtggtgaca tcgaatcctt caccgagtgc agttccggat acggttttcg atcagatgga       720
     cgatctcaaa gcacagttgg aagctctcag cacagaggtt cgtcgtatga agcaggctcc       780
     tgttggccgt cgaatgagcc ggtcatcgtc acgttcccga accagaaaca gcggtacaag       840
     tgcggagctg tgctggtacc atcggaaata tggacaacaa gctgagcact gccgtaagcc       900
     atgtctgttc gaaacgacaa aaaactagat caacgctcac ctgaatcggc ggaggtgggc       960
     gaatcgtttt ccagccagaa aactagtggt ttgcgattcc ttgtcgacac cggatctgac      1020
     gtttcgatca tacctgctac gaaaagtgat agactcagcg aaccaattcc atttttgctg      1080
     cacgccgcaa atgggacatc gatcagaacg tattcgacca agtttttctc aacagatctt      1140
     ggactcagga ggaaattgac gtggaacttt ttggtggcag acgtaagcca cgctcttatt      1200
     ggtgctgact tcctggcgca ttttggatta ttggttgaca tgcgtaattt cattttcatt      1260
     ttcattttca ttttgcagcg tttggtgggg caatgagagc gcaagtcagt ccaaagccgg      1320
     ggtaagggat aggtaatggc cgtaatagtc tatgcggacc acttgaacac catcggaaag      1380
     gataagaagg gttggggtag ggtataggga atggagaaga cttgacacag taatgcgatt      1440
     aatgctgcaa aatgtaaatg tgctgaaagc aatttaattt gagttttgaa gtttgatttg      1500
     acttattaaa attccaaata gatcggccat tgtacaagta agaaagaata tgctgatcgc      1560
     tttctagaaa ttttataaac aacaaaataa caacaatatg agagtgatgc taagggctgc      1620
     tgatggcaca atgcgacgct ttaggagatt ttgatactga atgaacatta ctatacagag      1680
     cgtaatttaa tcgatggtga taactttaca aactttatct gtttttacac tgattgacga      1740
     tgctgattta cataaaaata ttttaaaaat aattgatatt attagttcat ttgtttgtgt      1800
     gatctaagtg ttaataatgg aaaaatttta catacccttg ataataatac ttccctgatc      1860
     agaaatatta tattttgagc gcccttttcg aagctattct atccaggtat ccatgtactg      1920
     ctttcaatcc tgaaattatt cttattgtgc atgctcatgc attatattag tgatgatcat      1980
     aatcatgcaa cagataagaa ggagagaaaa agagaatata ggaacagtga ttagtaatga      2040
     gttaattatg tagttttgtt agaattataa acaattaaac agcagtaatg aataacttat      2100
     aaaattactt tgcagcatag ctgagccttt cggaacgtaa gaccgatgta taaaaataat      2160
     ttgtttcgaa attgtccgcg tggtcttcta gtgcccctat tagatcagaa tcagtcatag      2220
     acatacatat cgaatgctcg ccatgaccct atgaccaaca tttgtatatg tatagactta      2280
     gctgatgtgg cttttctaat aggtagttct ttcactcatt gattgtcttc aaaaccttgt      2340
     caagtataga aaattgattt tatttcattt attactacat taaagctaca ttgtacttat      2400
     taagtattag gtattatttt atgtttttat cactattgat attatcaagg ccagaattcc      2460
     cagtgagtga agaattttat agtactagaa caccatagaa gatcgcttaa cattacctaa      2520
     tcatggaacg gctttttgct ctattatttt aggtagatgc tattgatctc cctttgctcc      2580
     tatccgcaac ccggtgcacg cgccctgttg gttttcgaaa acctcgtaga agattacaaa      2640
     ccgtcaatgg cattcccaat tactacccca cattgcacat tcaagggtct gattgtgctc      2700
     ctaacccacc ctcagtctgt aatcttctcg ccagtttgaa attatatttt cccgaagtga      2760
     aagtaatttt gatgagtgat agcgtagtgc agcccaactg catagtacag tagtttaacc      2820
     agaatcttta ggtcagaaga taaaatctaa attttgtaat aaaaaggttg ccattgcttt      2880
     gaaatttacc caacatctaa tcaaaactac taacaacagc gatcaattat caaaattcat      2940
     cgctccctgg aaaatataat cccaagccca gggattattg gttgacatgc gtaataaggc      3000
     tttaatcgat tctacgacaa aactgcgatc ggttggcagt gtgacgatgg ccactatcca      3060
     cagcattact acgattaacg gaagtcatcc tttccatggg ctgcttgctg aataccgcct      3120
     tatcacacag ccagcaacaa tgcggaacga aattcaacac gacgtttcac atcacatcgt      3180
     aacgaaaggg cctccactag catccaaagt ccgtcgtatg catcccgata agatgaaagc      3240
     tgcaaaagaa gagtttaatc tgatgatgga gttgggcatc tgtcgaccgt cgaagagctg      3300
     ttgggcaagt cctctacact gtgtcccgaa gaaaaatgga caatggagat ttgtcggtga      3360
     ctatcggcaa ttgaacaggg ttaccacgcc agaccgctat cctgtaccgc atgtgcacga      3420
     tttgcttcat tcgcttcaag gtaagaaagt ttttaccgtt atcgacttag aaagggcata      3480
     tcaccaaata ccagtcgtgg aagaagatat tcccaaaact gcggttgtca ctccctttgg      3540
     actttttgaa tttacacgca tgcaattcgg gctttgcaat gctagtcaga cgtttcagag      3600
     attcatgaac aaagtgctag gcgacttgga ttttgtggtc gtgtttatcg acgatgtctg      3660
     tattgcttca tcaaacgcaa aagaacacga gcagcatgta agaatcgtct tcgagcgcct      3720
     gcaaaagtat ggtttggtta ttaacgttgc caaaagccga tttgctcagt ctgaagttga      3780
     gtttctgggg tatttggtga gcgaacatgg aattagtcca cttccatcaa aagttcaagc      3840
     agtatcaaat tacaaattac cgactactgt gaaagaactg cgtcgtttcc tcgccctgat      3900
     aaacgtatat aaacgtttca tatcaaaggc agtcgatcca cagttagagc ttcgaaagat      3960
     gattcctgac aataggaaaa acgatacaag gaagctacag tggagcgaat ccggtgtact      4020
     tgcatttgag cgttgtaaga aatctttggt agattcagtt ttgctacact atccagattc      4080
     taacaaaccg ttagccctga tgatcgatgc ttccaatact gcagctggag ccgttttaca      4140
     acaattctct ggaacttcat ggcaaccgct tggattctat tccgaaaaat tttcggaatc      4200
     ccaacgaaaa tattcaactt ttgggcgaga gctaacggct atgaagatgg cagttaaata      4260
     tttccgttat tttttggaag gaagaaattt caccattttc actgaccaca agccgcttac      4320
     cactgcaatg gggattaact ctacaagtag attacctcac gaggaaagat acctacgata      4380
     tatttcctta ttcaccaccg acatacgcca tgtaagcggt atggataaca cggttgccga      4440
     tgccttgtct cgcatagaag cagtcagctt gattaacttt tcatctattg ctgacgacca      4500
     agttcacgat gatgagttaa aacttcttca gcaatcttca agtctaagaa tagaacccat      4560
     acgcattcca aacctatctc gacctgtata ttgtgatgtc tcagtaaaaa acaaagttcg      4620
     tccttttatt ccagcgaaac accgtgcagc gataattcgt cacctgcatg gcatggcaaa      4680
     cgttggagcg cgagcaacaa ggcgtctcgt gtcggaaaga ttcgtctggt catcgatgaa      4740
     taaagacatc aatcaggtcg taaaagaatg cgaggaatgc caattatcga aagttaatcg      4800
     atcattcgac ccgccgaaat gccggttccg tcacatccac gttgatctcg tgggaccatt      4860
     accaccgtcg aatgaaaatc gttatcttct aacaattctc gaccgtttca cgcgatggcc      4920
     tgaggccgtc ccattgccgg atatgacagc gcccacagtt gctaaagctt tgacacataa      4980
     ttggatttct cgtttcggaa ccccggaaac tattacgacg gatcaaggtc gccagttcga      5040
     atcggaactg tttcgggagt tgaccttcat actgggagca catcacatca gaaccacggc      5100
     ctatcatcca caatccaatg gaatggtaga acggtttcat cgcacgctaa aatcagcact      5160
     catgtgcaag aatgcaattc actggagtga cgaactgccg atagtgcttc ttggattgag      5220
     aactgcgttc cgaaatgagc tcaaatgttc ctcagccgat ttgttgtacg gacaagcctt      5280
     gcgcgtccca ggagaattct tcgaaccacc tgtggactct gtcgatcgat cagaatttgc      5340
     gaaaactatg cacgatacgt tttccaaact gcgggcgccc aaaatcaacc atcatgcgaa      5400
     gtcgaaggta ttcatccata gcgatctaca aaaatgtgac caagtatttg ttcgtatcga      5460
     tgcagttaaa cgttcattac aacgacctta cgagggtccc tacaaggttg tcaagcgatt      5520
     cgagaagtat ttcgatgtcc ttatcgccgg gaaacagcag aaaataacga ttgatcggtt      5580
     gaaaccagcc tacatatgtg aagagaacat ttccagttat cctgcagaag attctggcag      5640
     taaagttacg ccatctggac atcgtgtacg tttcttggcg taactggggg ggtacc          5696
//
ID   Gypsy-470_AA-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-470_;
KW   Gypsy-470_AA-I; Gypsy-470_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-187
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-187
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3077-3077 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 187 BP; 54 A; 31 C; 42 G; 60 T; 0 other;
     tgtgggtatc gaatagatgc accctagttt gacgacaaat ggaagagcca ccctaaacgc        60
     tgagacgttg ttgttgttat cgtaaacgcg aagtgaaaat acacgttgta ttcgattgga       120
     gtaaataaaa taagttttta ttgttataat tactcgtgtt atggtttttc cggtgtcagt       180
     ccccaca                                                                 187
//
ID   Gypsy-471_AA-I repbase;    DNA;    INV; 4491 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-471_;
KW   Gypsy-471_AA-I; Gypsy-471_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4491
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4491
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3040-3040 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4491 BP; 1288 A; 905 C; 1273 G; 1020 T; 5 other;
     tgggggctca accgggattt ccctcatgtt tcgagtcgaw tcgagtgtga aattagtggt        60
     gwatgctaaa tttgcaaatt tctgcaaatg gcgtccgaaa atcttcgctt agatcgagag       120
     cggtcatagc gtcagagtct gtgtgaggtg tcggggacag agaaaagttc cctcaccaaa       180
     gagaacgtgg tttccgtgag attggagaat actctccaca gtgctttgtg cggaagagtg       240
     tgcctctgtg ttggtgaact gaggaagtat acttttcatc gagtgaaaaa acgatcgtta       300
     tgtttgtgcg cgaagtgcta acgaggctaa caaacccgca gctccgcgag ttttgttctg       360
     cgagaaattt gccaacgtcc ggcaaaaaag agaaattgat ccggcgctta ttgagtttca       420
     gtgaaaacag tcaagaggaa acagttctcc atactgctaa aggaatcgtt acatcaactc       480
     cgaaggccga cgaaaaggaa tcggagtcag agatgtcgag tgaagatgaa agtgtgggtt       540
     cgcgaggcag tgtgcgtgcg cctcagttta cgttcaatga tattggtgac tccctcgaac       600
     gattttctgg tgagcgcacc gacagagatg tccacgactg gctggacgag tttgaggaaa       660
     caagtgaaaa ctttggctgg agtgatgcgc acaaatttgt gtacagccgc cgactattga       720
     agggtacggc aaagttattt gtgaacagct cgagtggttt gaacagttgg aaaaagttaa       780
     aagctgccct ccaagaagag tttggtggca aaktgtccag tgctgagatc cacgaacttc       840
     tccggaacag gaagaaaaag agcgatgagt cgtttttgca gtacatttac catatgcaaa       900
     atattgcaaa acgaggccgt attgaagaag aagccgtgtg tgaatatgtg gcgaacggag       960
     tgaacgacat ttcggtaaac aaggtgtgcc tgtatggcgc gaaaaccgtt gccgaattga      1020
     aggaacgtgt gaaacagtat gaaaaaatga aaattcaaat gtgtgaactg agtagccgag      1080
     cagtgaaaaa cacaaacaca ggtggccgtc agaaggagaa aatggaatca aagtcgagtg      1140
     tgaaagattc cactggcaca gccaacgtga gtgacagtgt gcgttgctat aattgtggta      1200
     gacgcggcca ctacgcgaat gactgtgacg gtgaggccat agtaacgcgt ctgcgtccgc      1260
     gaacgcgatg cgatcaaagg atttcctgtt gttgatattc tgctttgcgg gctcgcacac      1320
     gcggacgcgt cgctcgacgc gtttactatg gcagcgccct gatacaaaat cgcaaggccc      1380
     gaaatgcttc ggttgtggag agcacggtca tcgagcgaaa gactgtgagc gggagaaaaa      1440
     gaaagccgaa gtaaatgcgc tctccgacgg catgccggtg tgtgagattc aagttggtgg      1500
     ttctgctctt cgcacattat tcgatacggg aagccgacac aacttgctgt gtgagagtgt      1560
     gtacgtgaaa gtgggaaaac caaatctgca ccccaccatg atgagcttca gtggatttgg      1620
     tgcggcgaaa acaccagctc gtggtacggt ggacgtcgat gtgtgtgttg gtgtggataa      1680
     atttccgtcg atgacgtttt acgtcgtccc gccgggttgt atgaaatacg acgccatact      1740
     cggcatgagt gcactacaac acatggatgt ggaagtgaac cagaacggag taaacattaa      1800
     gaagaaagtg gtggaaaatg acgctgtaga agagagtgac atgatgcaga ttttgagtgc      1860
     gtgcgagcgg gaaaaccttg atgtggaccc ccagtacgct gatgtggtga aaaagatgat      1920
     cgcgaactac cacccgaaaa gtgaagtgtg cagccgggta gaaacgaaga tcattttgac      1980
     cgatgacgaa cctgttcatt cggctccgcg gcgatttgca ccaaaggaga aagaagtgtt      2040
     ggagaaaacc atcgacgagt ggctggaatc gggaatcgtg cgcgaaagtg ttagtgaata      2100
     taccagtccg gtgacactgg ttccgaagaa aaacggttca ttgcgcgtgt gtgttgatta      2160
     ccgacaactc aaccgtaaaa tagtgaaaga ttgtttccca atgcggaaca tagaggacca      2220
     aattgataaa ctgaaaagtg cgaaagtgtt taccactctt gacttgaaga attcattctt      2280
     ccacgtgccg gttgaggctt ccagccaaaa atacacgagt tttgtgacgc atatgggaca      2340
     atacgagttc ctcaaaacgc cgttcgggtt gtgtaacagc cctgcgagtt ttagtcgatt      2400
     cgtggtggat gtttttcgtg atttgattcg aagtggagtg ttgatcatat acgttgacga      2460
     tgcgattatt gcgaccgaca cgccggaaga gaatgtcgcg gcgttgcgac aagtgctgaa      2520
     ggtcgcgagt gaaaacgggc ttcaatttaa ctgggaaaag tcgcagttcc tgaaaagaga      2580
     ggtcgagtac ttgggatacc tgattagtga agggaaatac cggatgtctc ctgaaaaaat      2640
     ccgggctgtg aagaatttcc gtgttccgag taacgagaaa gaactgcaac ggtttctggg      2700
     actaaccagt tactttcgga agtttgtgcc gggctatgcg gtcattgcga aaccgctgac      2760
     cgatcttttg aaaaaagacg tgccgttcgt gttcggtgaa aatcaaagaa gcagtttcga      2820
     gcagctgaaa gacagtttgg tgtcggatcc tgtgctaaaa atttatgatg ctgctgctga      2880
     gacggaggtg cacaccgacg cgagtaagga agggtatggt gcagtgttgc tacaacggga      2940
     tcacgatgga agattccatc ccgtttatta tatgagccag aaaacgaagt gcgcagagaa      3000
     aaactacagt gcttttcact tggaagtgct cgcggtggtg aatgcagtgc aacgttttcg      3060
     ggtctacttg ctcggaatac ctttcaaaat tgtgaccgac tgtgctgctt tccagcatac      3120
     gctaaaaggg aagcatctta gtccgagagt ggccagatgg gcattgttgt tagaggagta      3180
     cacttacacc gtggaacatc gagcgggaaa ccgcatgcaa cacgtcgatg cattgagtcg      3240
     cgcgccggtg atggttacga caggcgaccc tctagtggaa gtgattaaat ccgcccaagg      3300
     gcgtgacgaa agactacgcg cgatctgtga gttgctgaaa tcccaacctt tcgaggatta      3360
     cgtggtgaca agtgatatgc tgatgaaaat tgtggacgga cgtgaagtag tcgttgtacc      3420
     gactgaacta cagtgtgaag tgatacgacg tgcacatgaa aatggacatt ttggtgcgaa      3480
     aaaactggaa gacataatca agcgggacta ctacattccg catatcagtg caaaaatcaa      3540
     gaggcagatc gagtgctgcg tgaagtgcat catggctgag cggaaaagag gaaaaacgga      3600
     aggacttctt tcgccgatcc caaaaggcga tgttcctttc gatacctatc acgtagacca      3660
     tgtaggaccc atggacgcta ccgagaagct ctacaagtat ttgttcgtgg tagtagatgc      3720
     tttcacgaag tatgtgtgga tttatccaac caaaacgacg aatgcggcag aggtgattca      3780
     acgattgcga cttcagagtg agttattcgg aaacccgagg cgcatagtwa gcgacaaagg      3840
     agccgcattc acgtcccatg atttcaagga gtattgtgcg gaacagaatg tggagcacat      3900
     cgagattacc acaggagttc ccagaggaaa tggccaagtc gaacgcgtca accaagtgat      3960
     tttggccatg ttgacaaagc tgtgtgttga cgataaaacc aaatggtaca aacatgtcgg      4020
     caacatccaa cgctggataa acggcagtgt tcatcagagt acgagtgtgt cgccatttga      4080
     agcaatgttc ggcgttcaaa tccgacatga aggcgatatt cgactgagcg agctacttga      4140
     cgagataaag atggcccaat tcaacgacca acgatgcgag atccggaaga aggcaagagc      4200
     tgctatcgaa aaggcgcaag atgaacagcg gcatgcgtac aatctccgtg cgaagccagc      4260
     gacaaactac gcagcgggag acattgtggc catcaagcgt acccaattcg gacctggaaa      4320
     gaagtatgca tccgagtttc taggaccgta caagatcgtg gctgttaagg cgaataatcg      4380
     atacgatgta gagaaggtaa gcggcgaggg accaaagcgg acaacaactg cggcgtccca      4440
     tatkaagctg tatcgggtct ggagtccaga tccctctcag gatgaccgag a               4491
//
ID   Gypsy-471_AA-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-471_;
KW   Gypsy-471_AA-I; Gypsy-471_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-197
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-197
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3078-3078 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 197 BP; 71 A; 30 C; 42 G; 54 T; 0 other;
     tgtaagggga aaagagacgg acgacgagtg atgaactgat ccaagagaga tatgaagtac        60
     agtgttccgc gagatattaa agcaaccgta cgaacttcag tgttgctccg cgtgaagtgt       120
     aatatttgac ggaaatcccg tattatttca atattattaa taaaaagtta atcattaaaa       180
     cttgtttcaa tatcaca                                                      197
//
ID   Gypsy-472_AA-I repbase;    DNA;    INV; 5477 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-472_;
KW   Gypsy-472_AA-I; Gypsy-472_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5477
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5477
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-APR-2019).
XX
CC   A sample sequence. LTRs >98% similar to the consensus.
XX
SQ   Sequence 5477 BP; 1637 A; 1051 C; 1286 G; 1503 T; 0 other;
     aaaatggcgc agccaacggc gctcccataa agtaagtaat agtttgaagg aaattatgtt        60
     ggcaataaaa agttaatcaa tgcaatctaa ttcggatgaa aaaaatccag aaaaccattt       120
     gggtttgcag aattgctacc ggtggttttg gagaaacttt tttttttaat atggctgcct       180
     tgttgcaagt tgggcttgtg agatttgaac attgccgttc aaattgtttt ggatacctac       240
     aacataaccc tagtgtgggt ctaatgtgtc ggaactttga gtggtcccag tgtatcaaaa       300
     atcatgattt ccctagtgtg ggtggacaaa ctaaaagaac ttcgtgtggt tcatgtgact       360
     aactcttgcg tgagtagatg aagaaaatga accttgtgtg gttcagtaat gtgatcttaa       420
     aactactctt gtgtgagtaa gacgacaaac caactttgtg tggcttggta tactcgtgca       480
     gaaaagtttt tgtgtgtgcg tgatctgtta tgctagatca agctcttaac ataaacaaag       540
     caagcctatt tttattttaa ctgtctacgg cacgaacaaa aaaaaatata caagcgaatg       600
     tttaaattga ttcgaaactc ggcattatgt aatagtgtcc aattcagcga atagttaaca       660
     gtttctgaat tttggctcat cttttcgctt ctaggaaacc caacaagcca acgaagaaag       720
     agttggaaaa agcgcttgag ttggaaaaaa gcgctccgcc aacctttctc ataagcttaa       780
     acaagtgcgt gagaataata aacaacggag tgaagcaact gatttggaca ccagctgcgg       840
     tattcatcct cgaggtcatt caacgtttcg agatgatttg gctagtgtca gaaacgattc       900
     tacgttgttg acatctatgt cgtttgcaac gttgaatata accgagtgtc gactctgcga       960
     tggcgaagac gatattgaca aaaagtcata caaacagtgg aaagagcagc ttgaggcttc      1020
     gatgaatcta gtgggagtat cggacgagtt gatgaagatc aatattttca aactcaatgc      1080
     tggccgtaag ctgttagatg tgctggaaag taccgcatct tcctcaacga cacctgatgc      1140
     agtattgaag ccttattcca atgctattcg tcgactggat gactatttcg gctcccgcga      1200
     ttacgtcttg ctgcagcggc aaaagctgcg atccactacg caaaaggctg gagagagcga      1260
     cgtgggctac gtgaaacgtg taatgacagt ggctaagttg tgcgaatatg gtgaggagca      1320
     actagtcaaa aacgttgcag atgtccttca gttacacgcg atcaatatca aggtacgaga      1380
     ggcaggacga aaaatactga ggaaaggcga ttctttagtg gatttaatgg ataagatacg      1440
     tgcgaacgag atcgagcagc tcaatgaagc gatttttgcc aaaaatcatc acttttcgga      1500
     gcaaacaact atagcagcag tttctcatgg aacctttcga ggcagtgcac ctcagtttcg      1560
     tggacaacat catttcgggt ccaaatttgg tatgagaggt gttggtgaga gaggcagagc      1620
     aaatttcaga agaaaaggca atgacaacaa ccaacgtacg cagtgttggc gatgcaccag      1680
     ctattatcat tccgcgtcaa catgccatgc tatagagaag gtttgccgaa aatgccacag      1740
     caaaggacac atcgaacggg cttgtaccca atcgtcgaaa ccatttccat tgaaacgacg      1800
     agcatcagaa gatgatattt ctgctcccaa gcctaagcga gttgctacgg tgcacaagga      1860
     agaagacgat acaaacgacc tgaccaaaga ctctgtaagt gatctatctt caacgtaatc      1920
     agcggatctg atatttgtta tcctcacaac taatcctcat cctaatgact tattgctctg      1980
     ttctgactgt tgaaatgaac taaattgata attgaatttg aaataaatat tttctctgat      2040
     tattgaattc gaaacgtatt tggaatttgt ttttttttat atcctatttg ttatggggat      2100
     aatacaagca actcgtaaaa catgaactct atcttacaaa atacttgttc tcacattttt      2160
     tccagcgtgt tgagtctatc gatttgtttt acaacagaaa ggttgcttgt cacgatgaga      2220
     aagggataat cgttgggtac attgccaaga ttccaatagc tttcctgata cattctggtg      2280
     cggaggtcaa caccataaac gtcgaaattt tcaattagct gattagtgat gatgattgta      2340
     agcgatcgat gtttcaaatc aagcaaggct ccgataaacc tcttcaagca tatgcaaccc      2400
     cgggtaacat tgatgtttct gcgacattcg aagcagaaat ggtgatatct gatgatcgtc      2460
     catgctacat ggagaagttt tatgtggtag ataaagctag accgttattg agcagaagta      2520
     ccgcgataag gttaattgct tactctcaat ggacagtaac cacagtttac taaaaattcg      2580
     atgaactttt taggtacagc gtactccagg taggattgag tgtaccagta tcgggacatt      2640
     ctgctgagat ttctggaaaa ttgttaccgg gtgagatgct tgcattgact tcatcagata      2700
     aatttccgaa gtttaatgtg ccgcccgtca cgctgtcata tgacaaaaga ctaagccacc      2760
     atcaaggatc atatttacga atattccagc cgcattcaag caagaaacag aacgaagact      2820
     tcgtgagctc ctggtgtccg gaataatcga agaggtttcg gaaaatatgg ataagtcgtt      2880
     ctgctcatct ttactagttg ttccgaaagg gaagaacgat attaggctcg tggttgatct      2940
     tcgcggcccg aacaaatcca taatccgtac tccattccga atgcccactt tggaggagat      3000
     cattggcgag cttgacggag cgcaatggtt ctcgacgatt gatttgaaaa gcgcattctt      3060
     tcacgtcgaa attcatgagg attcacgtca cctaacaaat ttgtttgctg gtaatcaaat      3120
     gtaccgcttt aaaagactcc ctttcgggtt atgtaatgcc cccgatattt tccaggaaat      3180
     cgttcaaaca ctagtactgt caggttgcaa aggtgtgatc atttacttgg acgattttct      3240
     ggtatacggg aaaacaagaa aagagcacga tgaaaacctg cagcaggtac tcgacaggct      3300
     acgtgagcac aatgttcgtt tgaataatga aaaatgtgta ttcggccaac agacggtcac      3360
     gttcgttggt tattcatttt caaacgatgg tcttagagtg gacgatgcaa aattgaaagc      3420
     cgtgcaagac ttcagaacac ctcgatctca gcaggaagtg aagagttttt taggtctggt      3480
     taacttttcc gaacgcttca ttctccatcg tgctgataaa accgttcatt tgcgtaattt      3540
     ggctaaatcg gatacgtttt attggaggaa cgaagaagat aacgagttca tgtttcttaa      3600
     ggagaaagcg ctgcagtcta ttaccaagtt agggtacttt agtcaagaag acgacaccga      3660
     gttatacgtc gatgcatcgc cagtgggtct tggggccgtg ttggtccaat acaacagcac      3720
     agcagtcccc cgcatcattt cttgtgcgtc aaaatcactt tcggagtctg aaaaaaagta      3780
     ccctcaaacg caaaaagagg cgctgtcaat ggtttgggtg attgagagat tttcggttta      3840
     tcttatcggg agatcttttg tcgcaaggac tgactcagaa gccaatgagt ttatttttgg      3900
     taataagttc agaagcggta aaagatcagt atctcgcgcg gatacgtggg ctctcaggtt      3960
     gcagtgctat gatttttcgg tgaagcgaat ccctggacat ctcaacatag ctgacgcgtt      4020
     atctcgttcg atagcagaaa cacaggtaga ttgcccgttt gatgaagagt ttgataagca      4080
     cattctatac aacctggaca gtggatttat ggatatttct tggaaggata ttcagttggc      4140
     agcggaaaca gatccggacc agaaagctat ccgtcgagca atcgagtttg gaatgtggcc      4200
     tgcaaactta aagcaatttg aaatccacga taagtttttg cgaacgctgg ggcccatcat      4260
     cttcaaggag gaaaaaatcg ttctacctga aaaacttcgt caaaaagcat tagcaaccgc      4320
     ccatcagggt catattggtt gtggggctat gaaacgagtt atgcgtgatc atttctggtg      4380
     gccgggtatg tcgaccaacg ttgaaaagca tgtcaggagc tgcgatacgt gtctgatgat      4440
     atccagaagg aatcctccga ttccactgtc tagccgtcag ctgcccgatg gtccttggca      4500
     aatcatacag gcagactttc taacagtccc cggttgcggc tctgtaaaat tgctagttgc      4560
     cttagataca tattcaaggt acctgtttgc cattgaaatg tggtctactg atgcaaaaag      4620
     cactaatcaa gcgttgtgta agattttttg tacctgggga ttgccattag ccttgcaaac      4680
     tgacaacggt cctccgttcc aaggccaaga tttcgttggg tattgggagg ataaaggggt      4740
     cgaaattcac aaatcagttc cattgaatcc acaatccaac ggcgctgttg aacgccaaaa      4800
     tcaaggcctg atcaaggccc ttgctggtgc gaagcaagat aggaagaact ggagaattga      4860
     tctgcaagag tacgttcaca tgcataacac cgtgaaaccc cactcccggc ttggaataac      4920
     gccttttgaa ctcttagtag gatggcgata caggggattc tttccgtgtc tctgggaatc      4980
     cgatttcaat actgctgatg tagatcgatc agagattcgg gataaagata cattggccaa      5040
     gttagttaga ggtacgctga tcagcaacat ggagctaggc cctcagacat atcaactgga      5100
     gacagggtcg ttatgacggt gcaaaggaag actatgtttg atccactttt ctccaaagaa      5160
     agatatacgg ttctagtaag gcagggatcg aaggtgatca tagttagtga tagaggagta      5220
     caatattctc ggaatattcg tgatgttaaa cttgcatcgg agtttggaaa caaattggga      5280
     acttgtaatg atgaaatact gagcgatgat caagaagaaa taagtagcca cgattcgaag      5340
     gtcttggatg aatattgtgg agaaaacgac caaaatcagt ccgagatgaa gtctaaaagg      5400
     gttgttagaa agccagggcg tttcaaggat atggttttgt atcgcgtata ccagtgaaga      5460
     gtagaggtaa tgaagga                                                     5477
//
ID   Gypsy-472_AA-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-472_;
KW   Gypsy-472_AA-I; Gypsy-472_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-276
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-276
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3079-3079 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 276 BP; 104 A; 44 C; 50 G; 78 T; 0 other;
     tgtagagtac atgatagaat acaaaaaaaa aaaaataaac ccttttgaaa tgaaactcca        60
     gaaatgtttt atttcaaata catacagaag aaatttcata attacattcg tattggtaac       120
     agtatgtggc ccgtgttaca cataccatga tatgacttgt taatacaagt atgaacttcg       180
     cgatgtgaat attcagaatc agtttaccga gtgatatacg gaagaacgga agcatttttg       240
     aaatgagccg aatcagtggt tccgccggtc actaca                                 276
//
ID   Gypsy-473_AA-I repbase;    DNA;    INV; 5282 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-473_;
KW   Gypsy-473_AA-I; Gypsy-473_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5282
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5282
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3041-3041 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5282 BP; 1677 A; 1021 C; 1204 G; 1380 T; 0 other;
     atggcgcagc tgacgaagtt ccagagtaag taattgaaaa aaaaaaagtg aataagttaa        60
     attttggcaa aatgaaaaat ccagcaattt agttttgaag tctttaattg caataaacca       120
     aatgtgaaaa tgtacgcttg cgataggaca agctttgaaa aaaaaatggc gtccaagcat       180
     gtgcaaattt gcgcgaggac aaatttcaaa cttgcgatag gacaagtgct aatacttata       240
     cttgcgagaa ggacaagttg aaataattaa ttgaatatga ttcgaccgtt cacaaaaaaa       300
     aaaaactcca acgaaattca ttttttacag aatcgatcag acgacattgg taaagaaagg       360
     agtgaaaacc aaaaaaagca aggaaattga atcgcttcgg agtgatctga atgctgaaag       420
     agccagatgc gaacaacttg agaaggaact agttcgcctt cgtgagaaca atgtgtcgtg       480
     tgacgtcaat ggtgaacagg acatggaatc tgtgttggat gaaccaatga gcgatagtag       540
     tattgagttc cgacgtgctc taggtccaac gagcactcag cggatgaacg catcagccac       600
     gataggttct gcagaagggt cgcggttcat agcatctgta acccagttgt ccttatcctc       660
     gatcaacata ccagaatgca agcccttgga cggcgataat gaaatctacc gttactctta       720
     tgaagcatgg aaagaattgt tggaagatac gatgaggctc gctggtgttg aggatgaaca       780
     gacgaaattc accttattca agattaaggc gggcgctcga ttgttgcaaa tctttcgaaa       840
     cacaaaatca catggcgagt gtccaaatcc agaaactgaa ccattcgcca acgccatgca       900
     tcgactgaaa acatatttcg gatcaggctc cgatgtcatg tttcagcgcc gtaagttagc       960
     tctcatgatg cagaatccgg gagagtctag tcttgcgttt ataacacgtg ttggagcaac      1020
     ggctcgactt tgtgagtatg atgaagataa ggagatggaa gaaattgtcg gtaccgtcgc      1080
     agaacatgct gtaagcagag aggtgcgggt agccgcattg aaaatgctta acagaaaggg      1140
     caagttttca agcttagttg acaaggtgag ggagcttgac gccattcaga tgaatgagga      1200
     atatttcaag cttaagcatc agagaccgga gacagctacg gttgccgcag tgagcgcagc      1260
     atatccgatg aacgatcgat cgtcatttca acgtcaagga tcacgcggag gaagatacca      1320
     atttatcagt gcacgtagaa gagaatctcc atacaatcca acaagaaacc ccagatctgt      1380
     cgaagctacg aattcatatc gtcgaggatt tcgtgaacct ccgaagagcc gacccgaccg      1440
     atgctggaga tgtaacagtg tctaccacca tccttcggag tgcaatgcag tagacaaagt      1500
     atgtatcggc tgtggacaaa tcggacacat aaggagagct tgcaataacc caggacatga      1560
     atcaacacga taccatggac aaagagaatc cgatccgaaa ccttcggatg tcaaaccgat      1620
     aacttcttcg gcggtgaaca acgtagaagc taaaacagag cacaacgaag atcgatcaga      1680
     agtgagtgaa attttggata attaaacata gatgaatacc tccttatggc acgcattaat      1740
     attgatcagc taatactttc tactgaattt gatgtactca ttaatagaat tgggtgagtt      1800
     aataaacatg taaatgaagt aaacatatta cttttttgtc cgatcagtaa atatgacgtg      1860
     gcataagggt ttacaactat atcctcaatt gattccaatt gataaatatt ttattaattt      1920
     tttgttagat tgtcgttcaa gaacgagacg aatcagattt gatggcgtta acggtttatc      1980
     atatcggtac gagcagaagg gatggaatag taacagcaac ggtagcaggc atggcatgcg      2040
     agtttttaat tgactctggg gcacaggtaa acacgttcac tgaagactct ttcaaacgtc      2100
     tcatgaacga tggtcgttac aacaatgacg tcttcaacgt aaaatcggga tcagatcgat      2160
     cattgaaggc gtatgcgacg tctaagcaga tacctgtatc tgcaacgttc gaagctaatc      2220
     tgttcataac agacgataga ccggtgtata cggaaaaatt ttacgttgtc aatgaaacga      2280
     cggctttatt gagtagatca accgctacta ggtatagtgt gttgcttcta ggactaaatg      2340
     tgccagtttc tacagtgcat actgaaaaat tgatacacaa tgacaacgaa gtagcatcag      2400
     ttgtatcaag cgagccgttc cctaagttca atgtccctcc cgtgaaaatt ttctatgata      2460
     cttcaaaacc cccatgtcga aatgtttatc tgaacatccc acaagctgtt aaaccgttag      2520
     tagaggaacg cttacaacaa ctgatttctg ctgaaataat cgagagggta accgatgaca      2580
     tggacacggc attctgttcg tctcttgtag tagttccaaa aggaaaagaa gatattcgtc      2640
     tggtaatcga cctgagaggt ccaaaccgct acatttatcg gtccccattt tccatgccaa      2700
     ctcttgaatc gattgtagct gaacttgacg gtgctaaatg gttctcaacc attgacttaa      2760
     ccaacgcatt ctttcatatt gagctcgaca aagattctcg tcacctgacg aatttcttca      2820
     ccgaatttgg aatgtttcga tgcgttagat taccgtttgg tttatgtaac gcgccagatt      2880
     tgttccaaga aattatgcag aggaaagttt tggctggttg caagggacaa attaactacc      2940
     tggatgatgt acttgttttc ggtgcaacaa aggaggaaca tgatgctaat ttggccgctg      3000
     tactagcttg cctcgagaac aataatgtca agctaaacaa gtccaaatgt gtttttggta      3060
     gtcaatcggt aaagtttatc ggtttcttgt tcacctcgaa tggttgggag gttcaagagg      3120
     aaaaaattat cgcaataaga aactttagga aaccaacgac gtgtgcggaa gtaaaaagct      3180
     tcattggcct aataacatat gttgataggt tcattcaaaa cagagcagac aaaacgcaac      3240
     acttacgtgc cctagcaaat gctagcagtt tcgtttggac caaggcagaa gacgacgagt      3300
     tccgaaggtt gaaaaatgaa gcacttcaaa ctatcaagcg tctagggtac tataacccaa      3360
     aagacagaat tgaattattt gtagatgcct cacctgtggg acttggagca gttcttgttc      3420
     aatttaacac agacgatact ccaagaatca ttgcttgtgc atcgaaagcg ttaacgacta      3480
     cagaacagcg ctacccccac acccaaaaag aagcactggc ggtcgtgtgg ggcgtcgagc      3540
     gtttctcttc atatctactt agcaagacct ttaccatacg caccgattct gaagccaatg      3600
     aatacatttt caatggttcg catcgtttgg gtaggagagc gacaactcga gcggaatcct      3660
     gggcactgag actgcagtct tatgatttca atatcgagcg agttcctggg tatgaaaacg      3720
     tagctgatgc gctgtctaga ttggtgcaaa caacacagga cactacacct tttgacgaag      3780
     acgacgacga aaaccacttt ttgtacacac tggatgccgg caatatggaa attacctgga      3840
     gcgatgtaga aagttgctct gaaacagacg ctgaactgga gcttgtccgc gatgctttgg      3900
     agagtaatgt ttggcccggc gcattacgaa agtatgaagc acaaaagaag agtctgcact      3960
     accttggatc catggttttc aagggtgata aaattgtact accgttatca cttcgattaa      4020
     aagcaatgcg tgcggctcac agtggacatg caggagaagt tgcaatgaaa cgaataatgc      4080
     gtgacttttt ctggtggcct cgaatgtcac ttgaagtcga acggtttgtc aagggatgtg      4140
     agacgtgcat tatgttgtca aagaaaaacc ctcccttgcc actttcgagt aggattcttc      4200
     cgaatggtcc gtgggagatt cttcagattg attttttatc actacctaat tttggctcag      4260
     gagaattttt gatcgttacg gacacttatt cacggtacat aaccgttacg gaaatgagaa      4320
     acattagcgc cgaaaacaca aattcggccc tttgcaatat tttcaaaatt tggggatgcc      4380
     ctattatttt gcaagtaaga gtttcataat ggcattttgt tgaggtttta gtttaattgt      4440
     tttgcttttt acagagtgac aatggcccac cattccaaag ttcaacattt gtgaaattct      4500
     gggaagaaaa gggcgtaaaa gtgcggaaat caattccact cagtccgcaa tcaaacggtt      4560
     tagtggaacg ccagaaccaa ggtattataa aggctatggc tgcatctcgt atcgatggaa      4620
     ttaattggaa agctgcaatg caaaaatacg tccataacca caacaatctt gtatctcatg      4680
     ctcgtcttgg agttacgcct ttcgagctcc tagttggttg gaaatatcgt ggtacatttc      4740
     cgagtctgtg gggtccagaa atttcgaaaa agatagacac aactgatatc cgagaacgtg      4800
     acgctgaagc aaaactaatg agtaagaaat attttgattc cgtcaatcga gctagagagt      4860
     ccaatatttc tgtaggagat tctgtattat tggctcagta caagaaaggg aaatgtgatc      4920
     cgtcattttc acatgagcgg ttcaaagtcg tagcaataga tggagcgaaa gttgtaattg      4980
     ttagtaagaa tggagtacaa tacgcacgta actttcaaga cgtaaaactt gctcctacag      5040
     aatcagaaga ggaagaaaca gagctaaacc tgccaaatca tgatttggag ccgagtttgg      5100
     aagatattcc tatggaagtc gagtcagagc tcacaggtcc tctgcattct caggatattc      5160
     ctcaggccga ttcttcgatt aacacacgag ttttgagaga acgaactgac ataagaaaac      5220
     cgacaaggtt tgacagaaat tatgtatata gcgtattttc ttagagtaca ggtgaaagga      5280
     ga                                                                     5282
//
ID   Gypsy-473_AA-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-473_;
KW   Gypsy-473_AA-I; Gypsy-473_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-399
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-399
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3080-3080 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 399 BP; 134 A; 52 C; 87 G; 126 T; 0 other;
     tgtagtgaag taaataaaat aaaaataata ataaatactt gtgaatttat atttgaaata        60
     aatctgaatt attacactat gttttgtttg cacatctggc agcactgatc ggcgtgacaa       120
     aaatatgacg aagccttgtg acatattttg tacctttgag tatttttcgg agaaaaactg       180
     agagagattc ttattggaaa tatgctgaat ggtatgctta cgtattgagc gtaggacgat       240
     agcggtactt ctattggaat gtatgtgtaa gagagaagta ccgttgctta gcgacgagcc       300
     gactgaaaat gattcttcag acgatttttg tgtcgtacag acgcgtttga aaaagtgtga       360
     aaataatttc agaaaaaatg tattcggccg gttaccaca                              399
//
ID   Gypsy-474_AA-I repbase;    DNA;    INV; 5791 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-474_;
KW   Gypsy-474_AA-I; Gypsy-474_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5791
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5791
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3042-3042 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5791 BP; 2165 A; 1040 C; 1074 G; 1510 T; 2 other;
     tggcgatcct gccaggagag gattctttgg atagcaaaca ctaatgtgcc tgtagtgtag        60
     tgccccgact caaccagagt tactgtgggt agcgagaata acagtgtaca gtgttaaagt       120
     gtcgtaaggc aattattaat ccatcatggg ctggttcagt gcggacgaaa tcgtcgccgc       180
     cccagccacc gcagcaaact acgaaggcca tttcactgca caatctatcg cattatgtgt       240
     gctagcagct gtaacgacgg gatacgttgc ggtaaaagtg ttggctaggt tgcaccgcca       300
     caatactgaa agattggccg aaagagtggc acgtcgagtc gttgtaccag tttaagcaag       360
     ggaaaagtgc aaaaatgcaa gtctaaagac taaacaacaa actaagaaac ttgttaatga       420
     gtgaaatgaa cataaactaa aatgtgaaga aaaagtaaaa tcatcgatat ggagaccttt       480
     ggagataatt atccgtaagc gggatagggc agaaattgga gcgacaatcg ggataaccat       540
     agcagcagtt gcaggaacga tgaaattcga actctcgagg gaaaaatcac catcaggata       600
     atcataaccg gaagtgactg gaaggcgtga tgtgacaagt gttcaaatgc tgaattaaac       660
     tatagctccg atgtggaatt cgtggatcct acttcaccaa aaatcaaaat caggtatgtc       720
     cctagataca gtgaattttc caagggcttg aktggttaag ttttattttt gtttattaat       780
     tatttggcta gtatgattaa ttcatggacg atcccatttt tgcamtacgg gaacaaattg       840
     caaaattagt agtaaattta acaaatttca agaaaagccc aaataggaac tatttagaga       900
     gcactctgat taaaaagtca gagtactcga gaaattgttt caaggagggc gaagaattat       960
     tggaaaaaat tgaacccaaa ttatctcctg aagttttcat atactacaag acaaggttaa      1020
     aaacatcttt cgaggaattg tcaacattaa ttgcaactaa attaagagaa ttgacaatgc      1080
     cgccaaaatt ggacctaaca ttggctttta aaatagtcaa acctttcgat ggcactgcaa      1140
     gtaaccttca gcagtacatc gaaagtgttg aattgttaca agattacgcc acagaagtgc      1200
     cagagataga tgtcctaaaa tttatgaaag taacattgtc gggcgcagct catggctcaa      1260
     tcgacaatgt acttacccta aatgacgcgt ttactgcctt gaaaacaaag ttttcagtaa      1320
     agctaactcc gagagccgta gagaatgaga tggcctcgaa aaagcaacaa aacaaaacaa      1380
     tcacagattt cggatctgaa atagagagtt tggcaacgaa actcgccgcc gcgcatgtat      1440
     cacaaggtac attcgcaacg gaggctgccg ctgctaacat cgtacaatcc gtagctgtga      1500
     aatctttcgt cgatggattg caaaatccaa cgacccaatt cttgttgagg gctagaaatc      1560
     ctactagcct caataaagcg atttcggacg cattagaatg caacccggaa acatcgaaac      1620
     ccaaaaacga aacagctttg tggtgcaact tccagcaaaa taccagaggt caccacagtg      1680
     gctggagagg aaaccagaac aactattatc gaagtcgttc atcaggtttc cgaagaggac      1740
     gtggaaattt ccgaggaaga ggaaattacc aaagaggtaa ctttcaaaat aacttccaga      1800
     ataacaataa tagtcaacag cgggataatc ataataataa caacaacaac aacaggaata      1860
     acaataaccg tggacgacaa gaaaatcgcc acgctgccaa cgtagtggaa gagaatatcg      1920
     aacccaacga agatgtaaac gtggcaaatc tttttcgtga gtaatggaaa attactcaga      1980
     gtaaaatttg gttgttatcg gaataaattt ggttttatta tcgatagcgg cgctagttgt      2040
     tcaatcatat cgagcaatct agtacccaaa ggtgttataa ttaacactgc agaaacaatt      2100
     acaataactg ggattaacgg aaaatcccgt tccttaggaa caattaagac ttccataaca      2160
     tacaaacatt ataaatttaa caccatatta catgtagcgg aaaatttacc agaaagtgta      2220
     cctgcattga ttggtaccga ctttctacgt tattatagag caaatataaa ccttcagaat      2280
     atgacattag aactgatgca tgagaattca catattacca ttccatttga aattaaccaa      2340
     cgtagcatgc tgactatacc agcacgcaca gaaattttaa catgcatacc taccaatgag      2400
     agaaaggaat gtgtggttct gaataagcag atatcaccat tcgtatttgt agcgaattcc      2460
     attgctacac cgaaagatgg gaagataccc attagaattg taaacgttgc aaataaacct      2520
     atatgtattg attctttaaa ggttgaaaca aaaagattga aagatttcaa tataataggg      2580
     aaaattgaag caccacgaca tgatgcgaat agatctgagc aactattaaa ggaattaaat      2640
     ttggaacatt tatcgtcaaa ggataaggca actataacga aactatgtct gaaatatgcc      2700
     gacgtgttct gcttgaaaaa cgacaaatta actacaacta gcatgtacac atctagcatt      2760
     aaattaaaaa gtggcacgac gcccgtatat tcgaaacagt acagactacc acagtcacaa      2820
     aaagtggaaa ttaacaagca aatcgacaat atgatgaacg atggaatcat cgagaagact      2880
     agctcagagt ggaacagtcc gattctttta gtaccgaaga aatcggcaaa tgatactaaa      2940
     aaatggagac tcgttattga ttatcgaaaa ctcaataatg ttctcgaaaa tgataaattc      3000
     ccacttccaa atattgaaga agtaatcgac tctttagcag gagccaaata cttctcgcac      3060
     ctagaccttt cacaaggata ctatcaatgc cagttaaaag cagcagatag acctttaact      3120
     gctttttcta cgtcaactgg acaataccag atgacgagat taccgatggg cctgaagata      3180
     agtccatcag ctttttcaag actcatgacc attgctatgg cgggtctcaa tggagaaaaa      3240
     tgtttagttt atctagacga tctgatcatt tatggaaaat cactagatga ccataacaga      3300
     aacctttgcg aaatttttga aagattgagg caagtaaatc ttaaactcaa tccattaaaa      3360
     tgtaactttt tacaggaaaa gctcgtttat ctgggtcact atatatctgc agaaggagta      3420
     cgcccggatc ctgcaaaaat cgaaatcatt aaaaaatggc ccaagccaac aaacgcggat      3480
     gaagtaaagc gatttgttgc ctttgccaat tattatagaa aacatattga aaactttgca      3540
     gaaatttgcg cacctttaaa ctatttaact agaaaatatg caaattttgt ttggacccca      3600
     gagtgcgaaa cttcatttaa tttactcagg gaaaaatttt tgagtccacc tatacttgat      3660
     tttccagatt tttcaaaaga taatacattt catctgcata ctgatgcatc gggatatgcg      3720
     attggtgcag tactttcaaa taagaacggc aaaccgattg catatgccag taagatgctc      3780
     aatcaggcag agaaaaatta cccaactatt gagaaagaat tactagctat ggtttggggt      3840
     atacgtcact ttcgacctta cttgtttgga aggaagtttg tggtgtatac tgaccacaga      3900
     cccctagtat atcttttctc acttacagac ccttctagtc ggttaactaa atttagatta      3960
     gccctagaag aatatgactt cgacgtgatt tataaacgag gtacggagaa cgtgatagcg      4020
     gacgcgttat cgcggatttc gagccatgat ttaaaatcat tgtctgaaaa aacttgcctt      4080
     ataacaacac gttcaatgga acggaaaaat agagaaagtt cagctgatat gactggagta      4140
     aataggactg atcaacctac gacacccgtc atagaaagca tagaacttca tttaagcgaa      4200
     aaaattaaag acgtcgagtt ttccaaagat aaaatagcaa ttccatcaca gacgacatta      4260
     gttcacctac ggggaataat gaaacgcata gtggaatatg ctaaaaaaga aaataaagcg      4320
     ctaataataa agaatgttgc aacatctaaa aaattaataa aaatcatcaa cgaattacaa      4380
     gttgagggca tgcccaagct catagtgatt ggaaaacgaa ttaaagaagt taatgacgaa      4440
     aaagaaaaac ttcttattat gaatgatttt cacatactgc caacagctgg ccacagtgga      4500
     atcaaaagaa ctctaaatac catccaatta cgatattatt ggaaaggtat gggtaaagac      4560
     gtcgaacaat ttatcaaacg ttgtaagaaa tgccaaatca ataaattatc aaatttaaaa      4620
     ataccaatga agataacgac aaccgctagt tcagcatttg aaaaagtata cttggacatc      4680
     gttggtccat taattaaatc agatggattt gagtacatct taacaacaca atgcgaacta      4740
     tcaaaattta taacagcgac accaatccct gataagacca cactgaccgt tgcaaatgcc      4800
     tttgtaacca gtgttatttt aaagtatgga gtgccaaaaa caattgtctc tgacagagga      4860
     acggagttca tgtcagaact gtttacatcc gtagcaaata ttttgggaat agaaaaacta      4920
     aattcaaccg cctaccacca ccaaaccata ggagccttgg aaaactcaca taaagtactg      4980
     ggaacatatt tgagaattca atgcgatggt aaactattca gttggtctga atggttgcca      5040
     ttctatgaat tctcctataa taatacagtg cattcatcaa ctggacatac acctttttat      5100
     ttagtctatg ggaaactttc taatgtaccg tccaatttaa cagaaaaatc agaagaacaa      5160
     aattataatt tagacgaata caccacaatt cttaaaatta aacttagaca cgctcacgaa      5220
     gccgctagga aacaattgtt aaacacaaaa atacaaagaa aaactaatta tgacgaaaac      5280
     aagaaacttg taaattttaa agcaggagaa cttgtcctca tcaaggacga gacatccaaa      5340
     aaacttcaag cgaaatataa aggtccattc aaagtcatag atgatttagg agaaaatatc      5400
     caagtaaaaa taaataaaaa gttggacact gttcataaag atagaataaa acgatactta      5460
     ggacatgtgg tggataagaa aaataaaaac gataaaaatg gtgaagaaga aatattggaa      5520
     gcagaaaaca aaagtgagga agaagaacac ggaaaaatta ataattcatg atctaaacat      5580
     actacttact tttataaata aattatacat attgacataa ccagtatcat ttgtaagaat      5640
     acttcaaaca tttatttgca tacactatgc attttatatt atattactgt tcttattaca      5700
     tacatattac tttttatatt acttctacta tcttatctta taaaaaattg taagttttga      5760
     acttaaattt tttatgtaat taattagggc g                                     5791
//
ID   Gypsy-474_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-474_;
KW   Gypsy-474_AA-I; Gypsy-474_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-268
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-268
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3081-3081 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 268 BP; 87 A; 59 C; 61 G; 61 T; 0 other;
     tgtggtggat acatggctta agtggttgcg ataaacgcaa cccaataaag taaacatgga        60
     tcagcataaa cgcgatcacg ccatccgggg cgatgagcgc atttatgctg agtagacaaa       120
     aaaggtcacg tagccaccgc gcggaccgac tgcatagcgt aagaagttga aacgaataaa       180
     tgattcaaag ttataccctt caactgagca gacgtgctta cttattgtga aagacctctt       240
     ccaccaatta tgcgatcaac ttattgca                                          268
//
ID   Gypsy-475_AA-I repbase;    DNA;    INV; 4415 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-475_;
KW   Gypsy-475_AA-I; Gypsy-475_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4415
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4415
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3043-3043 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4415 BP; 1285 A; 940 C; 1222 G; 966 T; 2 other;
     tgggggctcg tccgggaagg agttatcgag aaattgtccg gtcgaaacgt gaaattcgcg        60
     aaaaagtacg cttctaattc gattcggtga aaacgcggag tgaatccaaa atggcggagc       120
     aagtggacga attgtgcaaa gtttttacca aagccggaat cgagcgagag tgcgagaaac       180
     gtggcctatc tcgcgaagga tgcaagagag agatggcgca gagagtcgtg taccacgaca       240
     taacgatggt tgcaaacgac ggtcgtttac gtgccgatga cgaggtacga gacggcatgc       300
     aacacaacga cggtggcgac gacgcgctac atgccgacgg tggtaatgat cagcacgaaa       360
     gcgacgacga cgaaaatgga ggcaacagtg cacacgacgg tgatcgctcc aacgacggcg       420
     gcaacgacga tgccaatcat gacggtgacg acgacaacga tgatgtaaat gacggcagct       480
     cggacgacgg agatggtagt ggtagtgaga actccagtaa atttctcaca gcgctgacga       540
     gagaacgacg cgcgtccact ccgaaaaatc gagaacgttt tgcgactgaa cgacgccagc       600
     cgtattcgtt ccgagacgta gaagacagca tcgaaacgtt cggtgccgaa gatggacagg       660
     atgtgaagct atggatgtcg cagtttgaag agatgtcccg aacagcgttg tggaatgacg       720
     aacaaaagtt aatcatgtgc aggaagaaga tgacaggcac agcccgtcgg tttatgtttg       780
     cgcaacgtaa cctcacatcg tttgccaaac taaagagtgc cctcatcaag gagtttgctc       840
     ctttcgttcg tgcgagtgac gtgcaccgcc agcttgcagc acgaaagaga aagccgaatg       900
     aagccatccg cgactacatt tacgagatgc aacgcatagc tctttccatc gacctcgacg       960
     aaccgagcat ttgcgagtac gttgttgacg gcataaccga tgatgaattc caccggtcgt      1020
     tgctgtacga agcgcaaacc atccgtcaat tgaaggagaa gcttctcaat ttcgagaaag      1080
     tgcagaagaa gtgtgtagtg aaacaaaagc cacaagatgg ccagttgaag aaaaaggacc      1140
     aacgtgaaaa agtgtcgaaa aacccgtcag acaaaagttc gaagaagcac tgttttaact      1200
     gtggtgatgg cgctcacgtc gctggcgatt gcccacagaa gagcgatggg cccaagtgct      1260
     tcagttgtaa ttcgtttggc catttgtcgc gagactgccc gaagtcgggt gaaaagttga      1320
     agcagcacga cggcgttaag aaaggtgcat ctaaagtgaa cacattgaag agtgttacga      1380
     ttaccaatcc gtctgtgttg gtgaaaatcg atgcgtacga ggtcagtgca acaatcgaca      1440
     cgggaagcga gatttctctg gtccgaaatg atttctgggt ggaattggcg aaaaccggag      1500
     cacagatgaa aagctcgacg atgaaagtgc gcggatatgg aggtgccgtg aaaaatgttt      1560
     gcggggaatc agtgctaaaw atctcgatcg agaatgaggt gtatgagatc cttgtttacg      1620
     ttgtgccgca gcaagcgatc gatatgaaaa tgcttatcgg catggatttt cttcgtgttg      1680
     tcgattattc gatcactccg gaaggcgtta aaatcaagaa gattccggca gttgagccgg      1740
     tgtgtgaagc aaagtggatc cgaaggatcg aagaatacgt cgggaaaaac gaaatcgtcg      1800
     taccgtatca gtatcgcgaa aaggttatgt ctctcattga gaattacgaa ccgaaatcgt      1860
     ctgttacggc gtcgaataag ttgaagatca agttgtgtga caatgacgtt gtgtgcgtaa      1920
     atccgcgacg gttggctcct ctcgagcggg atgttgtgaa aaggcaaacc gacgagtggt      1980
     tagcaaacgg cattattcag ccatccgaga gcgagtacgc gagtgccgtt gtggtagtgc      2040
     cgaaaaaaga cggacgacgt cgggtgtgta tcgactatcg cgagatcaat aagaagatga      2100
     tccgtgacaa gttccccaca ccgaacgtgg aagaacagat cgataagcta tctggtgcgc      2160
     gagtgttcac tacgttggat ttagagaact cttatttcca cgtaccggtt gacgaagaaa      2220
     gtcgaaagta cacatcgttt gtgacaagtg atgggcagtt tgaatttcta cgtgccccat      2280
     tcggtctgtg tacgagtgga aatgctttcg gacgtttcat aaacactgcg ctgaaagact      2340
     tgatcaacga cggaacgatt gttgcgttta tcgatgacat aatcatcccg acggagaacg      2400
     aagaagaggg attgcaggcc ttgcaaaaag tgttgagtgt ggccgagaaa gcaggcttga      2460
     agttcaattg gggaaaatgt gtgttcctgc aacgacgtgt cgagtacatt ggctacatag      2520
     ttcacgacgg ccaagttgaa ccggcaccag ccaagatcga aaaggttaag cagtttccga      2580
     tgccgacgac ggtgaagcag ctccagmgat tctacggcct ggcaagttat ttccggaaat      2640
     ttgtaccctc ctttgccaac gtcgctcgcc cattatcagg tatgttaaag aaagatagca      2700
     aatttcattt tgacgacgaa gcgattgctg ctttcaatcg tattaaggaa attctcgcaa      2760
     gttaccctgt gttgagaata ttccaagctg atgccgaaac cgaagtccat accgacgcaa      2820
     gcaaatacgc tctggccgga attttgatgc aacgcgcgca ggacgatggt aagttccacc      2880
     cttgttatta ttatagccgt ttgacaagtg gcgccgaaca aaattaccat tcgttcgagc      2940
     aagaggcttt ggctgtagta gagtcgatca agaagttcag atgttatctc ttgggacgta      3000
     agttcaaggt cgtcacagat tgcagagcgt tcaaagatac gttgaccaaa aaaaggatga      3060
     acgctcgcgt ggcccgatgg attgttgatt tggccgagtt cgaatttgac gtcgaacacc      3120
     gccccggaga aaaaatgcca cacgttgacg cactatcaag agcgaatgtt atgctgctct      3180
     cagcttcggt aagcgcgcaa attgctgaag gccaacgaaa cgatgagaaa gctaaagcaa      3240
     tcatagcggc actggagcgt aacggcaatt acgaagggtt tagtatcagg aacggcgttt      3300
     tgtacgaagg cgacggtgaa aatcaacgag tgtacgtgcc tcaagcgatg gagtcgacga      3360
     tcgtacgagc agctcacgaa aaaggacact ttggagtcaa gaagaccaag gaacggatcg      3420
     acggtgatta ctacattcca ggattagacg agaaaatcaa gaactgcatc gctacgtgtg      3480
     ttccttgtat catcggcgag aagaagcgcg gaaaaccaga aggagaactc aagccgattc      3540
     cgaagggaga tgtaccattc gacactctgc acgttgacca tcttggaccg atgccatcaa      3600
     cgcgaaaggc gtacaactac atcttgacgg tcatcgacgg attcacgaag tttgtctggc      3660
     tatttccaat gaaatctacg ggagctgaag aaacgttgaa gaagttgagg attatcttcg      3720
     atattttcgg aaatccccgc cgtctgatta gtgatcgtgg tgcagccttt acgtcgaaga      3780
     tcttcactaa gttttgttct gatgaaggta tcgagttaca cacgattgtc accggagttc      3840
     cccgtggcaa tgggcaggtg gaacgcgtcc accgtatcat catcccgatg ttgacgaagt      3900
     tgtcaatcga caagccagaa ggatggttca gccacgtagc tagtgtacag aagtgcctga      3960
     ataacagcta ccaacgagcg attcaaacta cgccattcga actcctgatt ggtgtcaaga      4020
     tgaggacgaa ggaagatgaa gttctacacg agattttgca acacgagctt cagaacaact      4080
     ttgagcattc acgcagcgaa ctacgagaag ccgctcatcg gagtattcag cagattcagg      4140
     aagagaataa gaagtattat gatctgcgaa gaaaggcagc gaggaagtac caaatcggcg      4200
     atgttgtggc cataccgaag acgcaatttg gtgttggtca aaaagtgaag ccgaagtact      4260
     ttggacccta tgaagtcgtc ggagtttggc cgaatgatcg gtacgaggtt cagaagctgg      4320
     atccggacaa tgaaggacca cacaagacat cgacgtccgg tgattccctg aaaccgtggt      4380
     cacttccggg ccggaagtga tgtcaggagt ggccg                                 4415
//
ID   Gypsy-475_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-475_;
KW   Gypsy-475_AA-I; Gypsy-475_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-159
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3082-3082 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 159 BP; 43 A; 38 C; 29 G; 49 T; 0 other;
     tgtgggacga ttggcatacc ccccggcgaa gagagaagaa aaatcagttt ttataagtgc        60
     taccgaccga tgcacacgca tctccgcgtc tgtgtaattt ggaattttaa taaagataat       120
     ttctgtattt ctcaaccact cctttccctc ttttctaca                              159
//
ID   Gypsy-476_AA-I repbase;    DNA;    INV; 6568 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-476_;
KW   Gypsy-476_AA-I; Gypsy-476_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6568
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6568
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6568 BP; 2416 A; 1394 C; 1111 G; 1647 T; 0 other;
     ggcgcccgaa tagggaccgt ggctcgtaaa gtaagatttg ttcggttcga gacaagttag        60
     gtcgtacaca gtgttagaac ttcgtgtcgc caaactaagt tgtgaagtga aacgttagag       120
     tgatcgctcc tactttatcc gaatataatc cgaaaccaaa cgcaaccgca gaagcagccg       180
     tgtggaggac cccctagtag aagcgaccga ggaggacccg tcatcaaaaa ggacaccgtc       240
     accacactgg gaacgtttgg caggcgaacc cggttccacc ccagcgcgtc tcactgcacc       300
     cggcagagct ggcaaccaaa gggagttaat aggatttcat aaaccaggca cgcgatcccg       360
     accttcaacg tccttccgtc agaggctcag gagttgaggc aacaaatccc gcagtcgtgt       420
     ggcataccca tatgatgctt ggaattctac tgtaagtaat ctccttaata agaaaactaa       480
     aaagaaaatt atatcacaag tgtgaaaagt gaaaagtgaa aagtgacaaa aaacacgtaa       540
     tttttttcta tacataaaaa ttaaaactaa acataattcg aaaacattga ggcattaatt       600
     gcagagtttg aaaaccttag aattaatatt aacatggacg caatcgttca aggtcttgcc       660
     gcaagattag ccgctctcga agctgccaat gttccaccac aggcaattga ttattccgat       720
     ccacctttgt attttgtaga cgagaatggt gacccagtta gtgcagactc gatcgaaaaa       780
     ataccggacc tcgttaggga tttgccatca ttcacgggta atcccacaga tttaaactca       840
     tggcttaaag acgcaggcag tttagtagag tggtacaccc ctagaggtaa tgcatcaatt       900
     gctacaagaa ataccttcca tgcgatttgt aaaacaattc gccgtaaaat aagaggagag       960
     gctcatagtg cattggttgc atctaacgta aattgcaact ggaatttaat taagcgtact      1020
     ctaatcacct actatggtga gaaacgagat ttgaccacgc tcgattttca attgacaagt      1080
     tcctttcaaa aaggacgcaa attaaaagat ttttatgacg agataaataa tatccagtcg      1140
     ttgattgcaa actgcatagc aattgacccg caattctccc atccggaggc agcaaaatca      1200
     gtgcttgcac tctacaacag aaaagcagta gatgcattca ttcgtggttt agatggcgat      1260
     gtaggcaaat tcctaaaaaa tgccaatgtc gactctatag ccgcagcata ttcatattgc      1320
     cttacattcc aaaatatgga attcaggcga aatttgttaa aacctaaaaa ttatgactac      1380
     tttaacagtt caaaaaataa ttcatctatg atacctctca agactgtcaa tgtcaatccg      1440
     cgagcaaaca tgcgttttcc gggaacgcaa ccagtgtatc aaccccctca ccctatctat      1500
     ccaccacaac accaaaatcc tcaacatcaa tataatccac cacaacaaca atatcctcaa      1560
     caacaatatc gcccccctca accaacccag ccccttagac caccagctca cgctttccaa      1620
     gcaaatcaat ctcgagttcc agatcccata gacacagacg tatctatgag aactgcaacg      1680
     acaaactttg ccaataggcc acccaaaagg cccagaaatt ttaacataga gacacagcaa      1740
     cagtatctcg aacaatatga agaacattta caacaaattg aagaagagga agatgaatca      1800
     tttgagcggt attgcaaagt aattgagacc caagattctc aaaatgaacc cgcacccgaa      1860
     gcagaagcag ccgagcttaa ttttttagaa taaactcctc acttccatat tttttattca      1920
     agggcaatct acaaaaccca ctaaaaattc ttatagatac tgggtcgaat aaaaatttta      1980
     ttcatccaaa atatgcaaaa atttctcaca atgtgaaacg cccgttccca gtctcatcag      2040
     ttggtggaga cataatcatc acaaagtttt caacggccaa attattcaaa ccacattcga      2100
     acgtggacgt aaaatttttt cacatgaaaa acttacaaac ttttgatgca ataatcggtc      2160
     acgatacatt aagagaatta aattcggtta ttgacacagc aggagaaaaa atgacaataa      2220
     atggaaacca cgaaatcccg ttgctacaat accaattgca gcaagtaaac aaaatcatgg      2280
     taagagatga ccatttagaa cacaaacaaa aactacaact taaatcgact ttgtctaaat      2340
     tccaagatct ttttcagccc gctaatggaa agctcccttt tacaactagg gtaaaagcag      2400
     agctaagaac taccgacaat gagcccgttt actctaaatc ctacccctac ccacaagcgc      2460
     tcaaggaaga ggtagaaaag cagattaaca aactgctcaa cgatggaata attcagccct      2520
     ccaaatctcc ttacaactct ccaatatggg ttgtaccgaa aaagaaggat gcgtccaacg      2580
     agaagaaata tcggttagtc atcgattacc ggaagctgaa cagcaaaacc ataagcgaca      2640
     agtatcctat tccagacacg tcaacagtgt tagcaaactt aggtaggagt aaatatttta      2700
     caacccttga tttagcatca gggttccatc aaataaaaat gaccgaaaaa gatatcgaaa      2760
     aaacggcatt ttccatcaac aatggaaaat acgagtttgt tcgattacct ttcggactga      2820
     aaaatgctcc tagtattttt caacgcgtca tggacgatgt tcttcgggag catattggaa      2880
     aaatatgcca cgtctatatt gatgacatta ttatatttgg tgaaacgttt gaagcacact      2940
     taaaaaactt agaaactgtg cttgaaacat tgaaaaaggc taatttcaga atccaacctg      3000
     ataaatccga atttttgaga accgaagtag agttcttagg atttatcgta tccaataatg      3060
     gactaaagcc taaccctaaa aaaatcgaag ctatagaaaa atatccacaa ccctctaact      3120
     taaaagaatt aagaatgttt ttaggccttt ccggctatta ccgacgcttc attaaagact      3180
     acgcgaaact tgcaaaacca ttgacaaatc tacttagagg agccaatggc cataaacaaa      3240
     tttccaagtt ccaatcgaaa aacttcaaaa tagatctcga tgaagaggga gtcttagctt      3300
     ttaacacatt aaagaatatt ttatcttcag aagatattct aatttttcca gatttctcca      3360
     agccctttgt tttaactaca gatgcttctg ataaagcatt aggagcagtt ctttcacaag      3420
     tcaccgatca aggagagaga ccaatatcct ttatttccaa atcattgtca aaaaccgagg      3480
     aaaactatgc caccaacgaa aaagaactac tggctatagt ttgggctttg aatgccttta      3540
     gaaatttcat ttatggcgca aagattaaca tttatactga tcatatgcct ctaacattcg      3600
     ctatttctcc taaaaattca aatgcaaagc tcaaaaggtg gaaatcctat attgaggaac      3660
     acgattacga gatgttctac aaagaaggta agacaaacgt tgttgctgat gcgctatcaa      3720
     gagtacaaat taattccctc acaccaacca tgcattccgc cgaaaacgat gacagctcat      3780
     acatcccttc cacagagtcc cctataaacg tgtttaaaaa ccaactcatt ttcaaaattg      3840
     caccacaatc aagctacaag ttatctattc actttaaaaa gttcaaacga catatattca      3900
     cagaaccatc ttttaataga aaatatctaa cagaaaagct caaagatttc cttcttccca      3960
     acactatgaa tggtatcatg acaagtgaac ccataatggg tctaatacaa gaaatttaca      4020
     aagaaaattt taacccacga atgaaacgag ctagattttc tcagagatta gttgaggatg      4080
     tgcatgacga aaacgaacaa ttgaaaaaaa tacacgaagt tcataattat gctcatcgta      4140
     atgcagatga gaatgtaggg cagcttataa aatcatgtta ctttccacgt atgaataaaa      4200
     ttgtaaagaa ttttgttaag acttgtgaga catgtcagat tgaaaaatat gatagacatc      4260
     cccaaaaaac tcaagaagtt caaactcctg taccttcata ccctagcgaa atcattcata      4320
     ttgatatttt tgttttcaat caaactacta acttcatttc atctatagac aaactatcca      4380
     aatttgtaaa agtaaaagca ataaaatcca gatctatagc gcatattcag ggaccacttt      4440
     tagaactgct ttacgattgg gatataccct caactattgt tatagataat gagcgaagtt      4500
     tttgttcaga ggtaatcgag caacagatca aaaatttggg aattaaaatt ttcaaaactc      4560
     cagtatacca ttctgaaacg aatggacaaa tagagagggt acactccact ttgagagaaa      4620
     tcttgagatg ctgcagacac tctagcccca atctgagcac tagcgatctg gttcaattag      4680
     ccgtccataa atacaataac acaatccatt catccacaaa agatactccc aaaaacattt      4740
     atacaggagt gaatgtggat aaccttgcta tacctgactt caagaaacaa aaaaaaagag      4800
     aatctggata gaatagttaa attatttgaa aaaaaaaacc agaaaataga gcatccttcg      4860
     tacgcagaat ataatcccaa ctctgttgca tttgaaaaaa taaagagcgt ctcaaagaga      4920
     gaccccaaat ttaagaaaat aaaaataaag gaaaaccatc caacttatat aatagatgat      4980
     aaaggaagga aagtccacaa gtccaattta agaaaattca cgaaaggtag ctaatgatta      5040
     cacattaatt ttgctccata ttacagactc ttctggatca ccagcgtaag cgctacgttc      5100
     catattcaca acctgaatga cagcccacta gctataattc cattagggaa agcccaaata      5160
     aaaaaaggat acataagaat catccatcca atcgacttat cagaaattga acaaacaata      5220
     gcaaatatta atgatataac ccctaaatat gaagcatata aaccactgta cgatctgata      5280
     gaaacccgaa aacatagatt acatgattct ttccttaagc taaaaccacg gagtcgacca      5340
     aggcgatggg atctcatcgg taccgcatgg aagctgattg ggggaagtcc agatgcagag      5400
     gatttacgta tcatcgaaaa atcattgaac gcgcttacaa ctgagaacaa caaacaaatc      5460
     atgataaaca acgtcatcga acagcgactg cataacataa caactatcat caacaacgtc      5520
     atcagaatcg aaaaggaacg gacccacact tacacagtaa tgatcaacct cttaatcgta      5580
     cttttccaaa ttgaatccct acaagagcaa gtagatgtga tagaagaagc aattaccatg      5640
     gccaaacacg atattccaaa cagcaaaata tttaacacag aagacttaaa cgctattttg      5700
     gactacttaa attcgcagga tgttcacgta ccatcatttg atgaattgat gtcgcaatca      5760
     acagcacaag tagtgacaaa cgccacgcac attgtctact tgttgaaggt ttcccaaatc      5820
     actgaccctg attacgagta catatttgtc gagcccttaa ttaaatccgg taagagggta      5880
     gtttcacaac ataactactt cctgctaaat gattcagacg tgtttgaact gaatcaacag      5940
     tgtaagaata aaaaccaaca attcatttgt gatgatcacc agataagccc aactactaaa      6000
     tgtctatatc agctcataaa tggcaaaacg gctaactgca cattcgagaa agtttactcg      6060
     aaccaaggta tcatcaaaag ggtaaatgat ggagtaattc ttattaacaa cgcaatagcc      6120
     gaaatacgtt caaactgcag cgacaataac caaactctca atggttcata tttgattaat      6180
     tttgaacgat gtgctctaca gatcaacggt cagctctacg taaatgagga gaccacaata      6240
     aaaagacatt cttatcttcc aacaacaggg atattagtga aagaagtgga tttgatcgac      6300
     accttaccca tggaatacct gcagaacatc accctaaatc aacgtgaaca actccaaacg      6360
     gtgaatttaa catcaagaag ctggatgaca ggaatttttg gttcaatagg cgtatcaacg      6420
     gtaattttac tatcgctctt tggaaaattt gctctttatc tctacagaag acgaaaaaca      6480
     agagtcaacg ttgaaatatc acgcaacgta ctccttcagg acgagcaaca cgaagagctt      6540
     cgaggacgaa gcaacttaag gagggagg                                         6568
//
ID   Gypsy-476_AA-LTR repbase;    DNA;    INV; 544 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-476_;
KW   Gypsy-476_AA-I; Gypsy-476_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-544
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-544
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3083-3083 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 544 BP; 179 A; 165 C; 91 G; 109 T; 0 other;
     agttaccaac gaccgagacc acccacaccg aacgagcatc ataaagctgt catcatcaac        60
     cgaagacatt ccaaccggac gaagatcata aaaccctgag taccgggaat catcgcatca       120
     tcccgagctc gtggttccgc atcccaaaac atctagacat cgcatcacat tatcacacca       180
     acgtgcgaag ggacaataat accgaccgat tccaaccggg tcatcaaagt atcccgaatt       240
     cccggaaagt attgcatccg tcgcatctca ttaccatacc gacgacatca cacgcacctg       300
     catcgaccga gcatctcagt atcacaccta cgcacatgca tcgaccgagc atcctatttt       360
     cacacctgac atcatacgca ccggcatcac actacataga cagcgcacgc atcaggacga       420
     catcattgat tcccacgcca cggatggaaa gtggacaaat aaacaactta ccctagaata       480
     taaaagtgtt aggttgtaag aactaatcac tcagttttaa ttctactctt gaataaagct       540
     aact                                                                    544
//
ID   Gypsy-477_AA-I repbase;    DNA;    INV; 6428 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-477_;
KW   Gypsy-477_AA-I; Gypsy-477_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6428
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6428
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6428 BP; 2274 A; 1306 C; 1099 G; 1747 T; 2 other;
     ggaggctccg gcgagatcct ccatatcggg aacagtataa gtgatataag tgaagtgtaa        60
     aaatctttga aaaattcttc taagtggttc caagagccac accttcaata tatcacaaag       120
     cgacccgcag gacaccgtgg atcacccgat cggcgtgcca ggaccccagt agcgctccag       180
     caaaaaggac aatccaaact cgcctgcctg cggatccccc gagtgtgagg acgacagcca       240
     ccaaaagacc aacgatccaa tgttggccgg actcaggaca cggtccttta tgtaagtttt       300
     tccatttttt attataaacc gactaaagga gtattttttt taataagaga aagtgcaatt       360
     tattgatgaa atcaaatcga attatcaaat agtgattatt cttataagtg caatcaattt       420
     ttaaatctga gtgaatacag tgaatcaaac gatacagtag atttagcttt tagtgtctca       480
     tagttttgct acattagaat caaacaataa tggctaatcc aaacgccgct atcaatggag       540
     agccggttat cccaccgcta accatgcagc aatttattga gttagggaag ttaccagatt       600
     ttctgcgtga cctacaaccc tttgacggtc gaccaaccga attaattaat tggttagccg       660
     acgttcaagg tgtaatcgat atgtatcgtg aacacggtgc aaccgatgct caacttgagc       720
     ttatcggacg ttctgttcga agaaaaatta aaggcgaagc cgccgacatt cttaatgcaa       780
     ataatatcat gcacaattgg aacaatatca aaagtacact tttgctgtac tataaagata       840
     aaagggattt gaaaacccta gattttgagt taacgtccat caaaaaagca cctaatgaaa       900
     gcttagggag ttattattct cgtgttaatg agctactatc gtcaattatc gctcaaattc       960
     agacagaacc aaaatttttc ctacatgcaa attcacacat tgattacttt cgagaaaagg      1020
     caattgattc ttttattagg gggctagaaa aacccttatg ccaacttctg aaaactttct      1080
     ctccaaagac actaaaccat gcctatcagt tttgcctgga atatttcaac atggacaccc      1140
     gatcggctcc atatcgaaat gaacatgcat ctaatatccc aaaaccaatg gatttaggaa      1200
     cacctcccag attgccacct aaaaaacaac cattacaacc ttttactaga agttttcaac      1260
     aaccatttgt gcctatgcaa ccgtttcaat ggcctaaatt caattatgga ccccaagttc      1320
     cacaatttcc accaagacct ttcatgccaa accaacaatt tcaacaaaac agtagaccat      1380
     ttcctaaacc ggaacccatg gaagtggatc caagtatcag gtcaaggaac ataaattacg      1440
     gtaatagacc tcccatggga gtcaaaagac cacatccgtt cccatttaat caaccacagc      1500
     attttaaacg agtggctcac ccgctcgaat atagttatgc atatcctggt tacccagaat      1560
     gtgattcagg atacgaagat ttttattacc attattatca atcgcaattt gaaccacaag      1620
     agcacgaaga acaaccacag ccmgacattc atcgtgatga tgcaccaaca gctgaagagg      1680
     gccccgtcaa tcaagaagat ccgcaaccat cctcatcatc tcagactaat tttttagaat      1740
     ggaatccgag ttggtaattc caactcttcc gtttatctat ttaaaaacaa atattggcga      1800
     gtttccattt cttgtagata ctggagcgaa tgttaacatg attgaaccca aattagccta      1860
     cagttacaag atttcgaaac cgtacgactt caaagctgac aatatatcca gtgcgaatgg      1920
     taattttaac gcctcatctg ctatcgacat taacttcttt taccctaaaa tcaaccacag      1980
     tgctcaattt ttgcttcgcc aatttcatcc attttttaaa ggaataattg gtacaggtat      2040
     tctacaatgt ttgaatgcag taattgattt agaaaataac gttttacatt taagaaaagg      2100
     taaagaaacc ttaagtatgc cactttcaag atataatccc gcaactccaa catcaaacaa      2160
     cttattcaga atttctcatt tgtcaactga cgaaagagat aagcttcaaa aaatattaga      2220
     ttctcacaaa gaagtatttc atcaacccaa caccaaactt acttgtggta ccactgtgga      2280
     atgttcaata aatacctctg atgatgtacc aatccatcaa aaggtatatc cttatcctgc      2340
     agcctataca gaagaagtta ggaaacaagt tgataaactt ttagccgacg gtataatcag      2400
     accctcaaga tcggcttgga cttcaccggt atggatagtg ccaaaaaagg cagatgcatc      2460
     tggcgagaaa aagtttagaa tggtcataga ttacaggaag ttgaatgaaa agacaatttc      2520
     cgatcgatat ccaatgcccg aaattggtta tgtaattgat caattgaaag gacagaaata      2580
     tttttccaca ttagaccttg cgtctggctt tcatcaaata cggatgaaag caagcgatat      2640
     tgaaaaaacg gcattctcta taaataatgg caagtatgaa tttacaagaa tgccatttgg      2700
     attaaaaaac gcgcctgcaa cttttcagag ggcgattgat gatgttctta gagaacacat      2760
     aggaaagatc tgctacgtgt atatagacga cgtgatagtt ttcggtaaag accttgtaga      2820
     gcatttgaaa aatttggaca ctatcttcag aacactgaac gctgctggat taaagatcca      2880
     gttagataaa tcagaatttc ttcatcaaga cgttgaattc ttaggctaca ttataagctc      2940
     agaaggaatt aaaccaaatc aaaagaaaat tgaagccatc aatcagtttc cagaacctaa      3000
     gaatctaaag gaacttcgag ggtttttagg aatgatgggc tattatcgaa gatttgtcaa      3060
     agattttgca aagattgcaa aacccctgac gaaccttcta aggggggaga gaagccctgc      3120
     ctctaacaag agaataagtt tgaatgataa agaaaaacaa tgcttccaga aaatgaaaag      3180
     cttactttca tcttccgata tactcatata cccagatttt aataaacctt ttatcttgac      3240
     gaccgatgca tccgatttcg caattggtgc agtcctgtct caaggagagt tgggaaaaga      3300
     taaaccgata cactttgcgt ctagaaccct ttcaaaaacg gaagaaggtt gttcagtacc      3360
     cgaaaaagaa atgcttgcga tttactgggc acttcaaaca tttagaaact atttgtatgg      3420
     agcaaagttt aaaatattaa cggatcacca gcctcttaca ttcgcattgt ctcctaaaaa      3480
     tacgaacgct aaacttaaga gatggaaagc gtaccttgaa gagcatgatt atgaaatcat      3540
     ttataagccg gggaaatcga atgtagttgc tgatgcttta agtagaattg tctgctccat      3600
     gacaggaacc caacactctg cagacaacag cgacgatttt tatatcgaat ccactgaagc      3660
     acctatcaat gcctttaaac accaagtaat tttgcaggaa ggtccggaca aagtaacaat      3720
     aaccaatcca ttctctagct acactagaat aaacatttct actcttaata ctaatgacga      3780
     ctatcttttg caggttctta aaaatcattt tgatttatcg aaggttaacg gattattaac      3840
     aacagaacmc ttgatgggta aaatccaaga aatttacaaa aaacattttg gctccaagag      3900
     aatgttaaaa atccgctttt gccaaacgat gcttcaagat gtaccacaag aggatgaaca      3960
     gtggaatatc atccgacgag aacattacag agctcatcgc ggagctgaag aaaacaagtt      4020
     acaactattg aggaggtttt acttcccaaa actctctcaa aagttgaaag actttgtgac      4080
     aaattgccaa atttgccacg aaagtaaata caatcgaaac cctatcaaat atcctatcca      4140
     ggccactcca atcccaaatg cccctttcaa gattgcccat atcgatatcc ttttccttga      4200
     gaatcaccac ttcctaacct atatcgacaa attttccaaa tttgcccaaa ttaaaagtat      4260
     tgattctaga gctgctgtcg atatagttcc cgcagttaaa gagatccttt tgaagtacaa      4320
     tacaccagaa atattagtaa tggacggaga aaaatccttc atgactggag atttggtaaa      4380
     cttttacaac acccatcata ttcaaccata tattaccgca accggacgaa gcgagatgaa      4440
     tggtgttgtg gagcgtttcc actccacaat tctagaaatt tatagaatga caaaagcaga      4500
     gaatccaggg aaacctgtta atgaaatgct ccttttgtca ttgaataaat acaattcctc      4560
     aatccatagt accactaaac atactcctct cgaaattatc cttccttctc ccagaactcc      4620
     agaaataata gaaaaagttt tcaagaacat tacggaaaaa cagaaaaagg atttgaaata      4680
     tcataataaa taaaaaaaaa cgattgaact ggaatgcaat caggaagtgt atgaaaatgc      4740
     tagacagagg atgaagcata aaccgcgatt taagaaaaat aaaatcaaac acgttaataa      4800
     cagtacggtt actatggatg atggaagaaa agttcacaaa aatgatgtca aggtcaggaa      4860
     aatctaacat ctgtctttct tcatttcact tttcagagtt tttataagct taagtatagt      4920
     aataggtagt aaaatagacg ttaacagaat tgatcatttg ccgattgtta tttttcattc      4980
     aggttcagcg agaattcaat tatcatccca ttattatatc catcatttca atattacttc      5040
     cttaactaat catgtagaag gtcttagaag tcaattcgaa cagctaaaat ttaatcaatt      5100
     cacgaagctt atcctccaaa agtttgacga gattcatcaa acacttaaaa atttagctcc      5160
     atcaaaaaga aacaagagat gggatagttt aggagcggga tggaaattta ttgccggtag      5220
     cccagacgcg aacgatttaa aaattataaa ctcctcaatc aacgaacttg ttaataataa      5280
     taatcagcag atcagaataa acagagccct aaatttgcaa atgaaagaat tggtttacaa      5340
     aacaaaggat gcaatagacc tctcaaattc aaaatcattg gaaatctatt cgattaatat      5400
     tttccttaac ttgaagtatc tagcagaaaa attaacacaa attgtcgata gtgtaatact      5460
     tgccaaaata ggaattttaa acgaaaaaat actaagtcaa gatgaagtag aagttttgta      5520
     tcaagattta tctaaacaga atattacact tcataacgtc ttggaagcac tgagccttgc      5580
     agatacaacg atcgcaacca acaccaagga attgaccctt ttgataaaga cacccatctt      5640
     agataaaagg attttcaaca agattcacgt cttccctgta acatccaatc ataaacaaat      5700
     tcatttggcg aaaaggtatt atttgaatca tgataccggt aactacattg taaattcact      5760
     ggaatcaacc atttacaaaa ttcatgaaac ggaattcgac aactccaaat gcgtaccaaa      5820
     tcttctctct ggacagcaag ctagctgcaa ctataccatg aacccacctg atgaggaagt      5880
     cattattata aacgatggaa acattatcct gaacacaatc caaaacattt ctcttacatc      5940
     aaattgtgga attagtaatc gtactttaac tggaacgttt ttgctatcat ttcacgattg      6000
     cgaagtaacc atcaacaata ccagctattc aaacacggtt cagaatatgg caggaagccc      6060
     aatacagcta cctttagatg gaatttcaat acagaagcag tttacaatag caaacctgag      6120
     tttggaacat ttgcataacc tgcatctgga gatgagaaag gagatggagt atatccgatt      6180
     gaacaacacc agcttcagca tcaagtggcc ctcttggccc gcctttgggg gaatcatctc      6240
     gttcccctgc atgataatcg taattgcgat tcttttcaaa gttttctccc acagatcagc      6300
     cactataaag atacaggcat ctaatgacat agctactcag gaatcagtgg tggacattca      6360
     acccaggatc aagcctttga gtctaatgga cgtgattcgc acggaacctc atctctcagg      6420
     aagggacg                                                               6428
//
ID   Gypsy-477_AA-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   08-APR-2019 (Rel. 25.10, Created)
DT   08-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-477_;
KW   Gypsy-477_AA-I; Gypsy-477_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-304
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-304
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3084-3084 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 304 BP; 86 A; 59 C; 85 G; 74 T; 0 other;
     agttagcaac ggagctaccc ggttggcgtt aaccaaaaat gctgacgacc cagctgcagc        60
     gagtcggtaa cggagccgcc agaatgggtg cagtggagat tgctgacgac ggcatcgggg       120
     cggatgtaac catcggtcat cgacgcgatc cagctgtttc gatatgcgac gacgaaaagt       180
     gctagtgcag gcaaatgaag tgtagttaat ggatagattg taataaacgt ttagttcgat       240
     ttcggctcta gggtagttaa gtagcttttt ttaaaaagaa acttccatcc gtgaaaattt       300
     aact                                                                    304
//
ID   Gypsy-478_AA-I repbase;    DNA;    INV; 3043 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 25.10, Created)
DT   09-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-478_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3043
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3043
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (09-APR-2019).
XX
CC   A sample sequence, partial. LTRs are unknown.
XX
SQ   Sequence 3043 BP; 883 A; 630 C; 720 G; 810 T; 0 other;
     tattgataac tcaatacagg ttcagcgtca tgttccgctt caggcaccga atgaattcag        60
     tgatggagtt atatgggctg tagtggcagg actaaaatgt ccttttctga tagactccgg       120
     tgcccaagtg aatacgttca cactggatat gtttgagcta attatgtcgg attcgaagca       180
     cagtagcgaa ctgttgaatg ttcgttatga cgcagatcga tctctcaaag cctatgccac       240
     atcgggagaa atcaaagttg tggctacatt tcatgcacat cttttcattt ctgacgatag       300
     acctacactt ctggagaagt tttacgtcgt tgaagaaatt cgtgcccttt taagtagagc       360
     tacagcatgc cgatatagtg ttctgatgct tggattgaga gtaccgattg atacttatgt       420
     tgggacatcg acagacgatg agctacatcg tcatgctgga gaaatcgcat ccatatcggc       480
     caaagaagta ttcccaaaat tcaatatccc ggccgtaaag atttattacg ataagactag       540
     gcctccctgc agaaatgtct ttttaaacat tccactggca gtcaagcctt tggtagaaga       600
     acgtttgcaa aatctcgtca tgtccaatat tattgaacca gtaacagatg gaatggatac       660
     atcgttttgc tcatcgatgt tggttgtgcc taaaggaaag gacgacttta ggttggtcat       720
     tgacttgaga gggcccaacc aatacattta tcgaactcct ttcgcgatgc cgaccttgga       780
     gaaaatcctc gcgaaactcg aaggtgctac atggttctca acgatagatt tatcgaatgc       840
     attctatcat gttgaattgg atgagggatc gagaccaatt ttttcactga atttgggatg       900
     tttcgttacg tgcggttgcc atttggattg tgcaacgctc ccgatttatt tcaagaaaca       960
     cttcagagga aggtactcag cgattgcgaa ggatgcgtaa attatttgga cgatgttctt      1020
     atctttggtt cgacgaaaga ggaacatgat aagaatctgg ctgaagtacg ttccagactg      1080
     gcaaatcata acgtaaagct aaatgacagt aagtgcgttt ttggtagcca acaggtgaaa      1140
     ttcatcggat tcatcttaac gccccagggg tggcagatag aagaaggaaa actggtggcg      1200
     attaaagact tcagacgccc cgaaaactgt gcagaagtca aaagttttct ggggctgatt      1260
     acctacgtgg ataaattcat aattcaccgg gctaccaaga ctaaatgtct aagagcactg      1320
     gcaagttctg acgtttttta ctggaccgac gatgaggagg ctgaatttga aaacctgaaa      1380
     gaagaagctc taaattcaat caagacgtta ggatattaca atcctagtca tcgaactgat      1440
     ctatttgtgg atgcatctcc atcaggtctt ggagctgtgc ttatacaatt tgatgaagaa      1500
     gaaaatccca gaattatagc atgcgcatcg aaagtactgt ctccaaccga gctacgttac      1560
     cctcagacgc aaaaggaggc cttggctgtt gtttggggcg ttgagagatt caactactac      1620
     ctgctggcaa gatctttcac tatatggacg gattctgagg ccaatcagtt tattttcgat      1680
     acaaatcacc gattaggaaa aagagcagtt tctcgcgctg aaggtttagc gctgcgacta      1740
     caaccttacg atttttccat caaacatgtc ccaggtaatg aaaatgtggc cgacgtgttg      1800
     tcgcgccttg tgtgcgattc gcaagcagca gaacctttcg atggggatga tgataagcat      1860
     ttcctttttg cattggattc cgaacgaatg gaaataacgt gggctgaaat cgaaaccatg      1920
     tcggagggcg ataacgagct tcaatcggtg cgagaagctt tgtcgtccaa caaatggcct      1980
     aaggagctac gaccgtttga ggcacaacga aactaccttt tttctcgagg atcattatta      2040
     ttcaagaatg agcgagtagt gctaccgaaa gttcttcgta ctaaagcgat cacatcggct      2100
     cacggtggac atgtcggtga aatggcaaca aagcggataa tgcgacaata tttttggtgg      2160
     cctaagatgt ccaacgaaat agcacggttc atcaaaaact gcgaaatatg cattcttttg      2220
     tcgagacgta atcctcccgt accactgact tctagagaat tgcccgatgg tccatgggag      2280
     atactacaaa tcgactttct ctcggtctcc caatttggaa caggcgaatt tttggtagtc      2340
     attgacactt tctctagata tctggcagtt gtggagatga aagcgatgga tgctgagagc      2400
     actaactcag cactctgtga agtatttcac acatggggaa tgccgttagt cattcagagt      2460
     gacaacggac cgccgttcca aagtgcgaca ttttgcaagt tctgggaaga aaaaggtgta      2520
     tctactcgca aagcaattcc tctcagccct caatccaatg gtgcggttga gaggcaaaat      2580
     cagggaatca ttaaagcatt gtctgttgcg aagctagaga aaaagaactg gcggtcggcg      2640
     ctccaagatt acgtccatcg ccacaatacg cttgtacctc actcgaggtt gggagtgaca      2700
     ccattcgagt tgatgacagg ctggaagtat agaggaatat tcccaggcct ctggagcaaa      2760
     cctaactgca acgatttcga tgtgaccact attcgtgaac gtgatgcgga gtataagctt      2820
     tccagcaaga agtatgccga ttcagtacgt ggcgccaaag aatctaacat caaagttggt      2880
     gacgtcgttc tactggcaag acaaaagaaa tgtaaaatcg atcctacctt ttctccagag      2940
     cgatttagaa ttattgccag ggatggggcc aaggtcgtag ttatgagcac aacgggagtc      3000
     cagtacacac gtaacatcca agagataaaa atcgctccac cac                        3043
//
ID   Gypsy-479_AA-I repbase;    DNA;    INV; 6825 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 25.10, Created)
DT   09-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-479_;
KW   Gypsy-479_AA-I; Gypsy-479_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6825
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6825
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (09-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6825 BP; 2081 A; 1444 C; 1497 G; 1803 T; 0 other;
     tttggcgatc cacgttaaag gaaaatattc cctaggaata ttttaagctt gcagggggag        60
     actcacgatt ctgcctttcg ataatcgtga agttattctg tgtgttgttc aatcatctat       120
     ttgaaattcg tccataatct gtttgatctt aaaaaaaaac tgaatttcgt tatagttact       180
     accacataga aagttaaggt tatttctctc taaaactgaa atcatttcaa ctgttttgtt       240
     aaattttcac aaaagcacaa ttgtaaatac aatacttagt ttaattgatt tagcttttct       300
     cttgaattag ttagtttact tcagtaataa tggctacgac cgtagaggac ttagttgagg       360
     agaaattgaa acaactttat cacgacatta ggattgatca cttgaacgaa gatgaattag       420
     actttgaatt agaggttcgc gatattgtgt tcaataacga tgaatccatg tccagaaaac       480
     gtcgtgcctt gcgagaaacg ttgaagaagg aaaaagtaga agcaaattca atatcgagtt       540
     tgaaacggga tcccaaagaa gaatttaatt gttgtatgca gaaatttaga gagattgagg       600
     gagctattac catttcggca aaaaacgtgc ctcctaggtg tcaatcacgc ctattgcatc       660
     tagggagcag gtcgattttg ttgtatgaca aggtgtcaga aaatgagaag gcggaattag       720
     tgaagctaca gaattccatt ttatcgctat tgaatcgatt cttctacggt aaacgagctt       780
     ctttaacaga agacccggag gacactggta tagacagatt atttgctgat caatgtatag       840
     caggggagac tcggcagtca accttggatt cagtgccagt agaagacaag gacatagcgg       900
     agtctttgat taggttgggc ttattgcgat ctgacaacgt acaacacgtt gataaaggag       960
     atgtaagaga agcattaatg tcgttagagc aagagctata tctacttcgt aggttcaaga      1020
     atttgcattc aacgaataca gtaaatcctg ctgggaacaa tattccgcaa atttcagttc      1080
     aggagagccg tactacatac actggtacaa ttcctaaaca aactcaacca caggtagcta      1140
     atttgaactg gtactcaccg cagtggacag taccgtcaac agcggggtac acaccgaggc      1200
     cgattgcttc gagcaatatg catatcaata gccagtggcc gacagttact tgtgcaggag      1260
     cgaatacgat gactagtttt gcaaattatt caacagtggc ttcaggatgc gtacctgata      1320
     ttccaaccac ttaccctgtg attaatttca ctacacaccc gatttccacg aatgcaatac      1380
     ctcgagtcac cagttcggtg cactcgaatg tacccctagc atatacaccg gggactcaca      1440
     ttccttgtag tatgcctacc gcacctgtag taacgaccac atcggtggtt agcacagctt      1500
     cggtttcaca atatgcgcaa ggagtaaccc acccttatgg agcatctgca tatccaggaa      1560
     gtatcctatt ttcaccaacg gtccccccct atccgtcggt tacaagtttc ggggtttcat      1620
     taaacccgat gaacgctggt aataattact atccattagg gacttctcag caatcaccat      1680
     caggtcaatt ccaggcatct cattcagtac catttctagg agtagatcaa actcgtagtc      1740
     attctagcta caaatcgttg ccggtttcta agtggaagct ggagaaatat gccggaacag      1800
     atcaagggct caagttaaat gagtttttga atctggtatc ccagctagct ctttcagaac      1860
     gaacctccga agctgagttg ttcgattctg cttttcattt gtttagcggg ccagctttaa      1920
     gctggtacat gaccatgcga tcttcgggac gactagctaa ctggccacat ttgatcagtg      1980
     aactaagaag aaattttgct cacccggaac tggactcact agttcgtacc agaatctacc      2040
     aaaggcgcca gcaaagaaat gaaacctttc aggactacta ttacgacatg gaaagtatgt      2100
     tccggtcaat gatagtaccc atgagtaatg cggaacagtt ggatgtgcta aagagaaaca      2160
     tgagaggcga ctacaagaaa atgcttctct ggaaaccaat ttggggtctg ccagatctcc      2220
     tggaggcagg acatatgatc gatgcctcga acttttcatt atatgcaaaa gtttttggca      2280
     acgaaaagac caccaatgcg attactgaat cgaagcctaa aaaaggggat tctaagggat      2340
     accgagacca aggtaggcct ccgtttaaac ccttccctca acaaaaaggc tcgaatccat      2400
     caaaaacgaa agatgaaaac cctataaaga aagaggaacc ctttgggaaa aattcccctc      2460
     gtcctccaca atctgaacaa gggaagccag tggatccgaa agaaggccca tcaaaaccta      2520
     gaactttgga aatgctggtg gaagctcata gacccccacg gagttacgaa tgcctattct      2580
     gtcgtcagac taatcatgcg ttagagcaat gtcgaaatta tcgaggttcg ctttgcatgg      2640
     tttgtggctt caaagggttt gatacccaaa actgccccta ctgtcaaaaa aacgaattgc      2700
     agacggtccg aaatcgccga ccgtccaatc cgagcgcgta aacttatttc ctgtgggtgt      2760
     caccttgtca gaattctggg aaccagtacg tgaggatcag tacgccagaa atgagtccca      2820
     ggtgcttcaa atttctcttg gggacactca ggataatcga ccttacgcca gcataaaaat      2880
     ttacggccgc ccatcaaaag ggttgttaga ctctggcagt caacttacct taataagcga      2940
     ggatgtttac aacaaactca ataaaccgaa actcaaatct atgaatcagc ccataatagt      3000
     acgctcggcc aatgggtccg aaatggaagt gttgggccag gtcgcaatac cctttaattt      3060
     tacgggccga attaaaattg tacccaccct agtggtgagg acattatcgg ttgactgcat      3120
     actaggcatt gacttttgga agaaatttca aatttggccc actattcgag attgtgcggc      3180
     agttaattgt aacgaagctt taacctgtga tcaggaaaac gtcggttttt ccacctacga      3240
     acttaaacag attgcggaag tcaaagagtt attcctatgt gccaggtcgg ataggctgac      3300
     aattacgcct ctgatcgagc ataaaattga aattgcggac gattggagag gaaaggctcc      3360
     cgttcgacaa tatccgtata cactttctcc gaaagtgcaa cagaaagtag cggaggaatt      3420
     agaccgaatg ctatcgattg gaataattga aaggacttct tctgattggt gctctaatgt      3480
     tgtaccggtc attaagccaa ctggaaagat tcgcctctgc ttagacgctc gcaaaataaa      3540
     cgaaaggact gtacgtgacg catatccctt gccccacccc ggtcgaattc tcggtcaact      3600
     gccccgagcc aagtacctaa gcacaattga tctgtcggag gcgtttcttc aaatacctct      3660
     gcagaacaga tcaagacggt acacggcatt tagcgtccag ggcaagggaa tgttccaatt      3720
     cacccgcctg ccatttggat tggttaatag tccagcaacc ttgtctcgat tgatggataa      3780
     ggttcttggg catggtgaat tggaaccgaa cgtcttcgta taccttgacg acatagtcat      3840
     tgtatcggag acgttcgagc atcacgtaca gctccttcgg gaagtagcga agcgtctatc      3900
     agaagcgaac ctgtccatta acattgagaa atccaaattc ggggtaagtg aactgccatt      3960
     cctagggtac cttctttcaa ctgagggtct acgacccaat cccgagaaag tccaagccgt      4020
     tgtggaatat gaaagaccaa caacggtcac caaattgaga aggttcctgg gaatggcaaa      4080
     ctactaccgc cgttttatag aggacttcag tggggtcaca gccccattgt cagatctctt      4140
     gaaaacgaag tcgaaggtac ttggttggaa tgaggcggct gaggaggctt tcaatttgat      4200
     taaagaaaag ctaatttccg ctcccatcct cgcatgcccc gacttttctc aggaattttc      4260
     gatccaaacc gacgccagcg atgtagcggt ggctggaatc ttaacccagg ttcaggatgg      4320
     ctttgaaagg gtaattgcct acttttccca caagttgaca acgccgcaaa gaaactacca      4380
     cgcttgtgag aaagaagcgc tggctgccct gttgtctata gaagccttta gaggctatat      4440
     agagggtaca cattttacgc tgatcacaga ttccgcggca ttaacccata tcctcacggc      4500
     taaatggaaa accgcttctc gctgtagtcg atggtgccta gacttacagc aacacgatat      4560
     gacgattaaa catcgtcgag gaaaggagaa cgtggtgccg gacgcactct cgcgtagtgt      4620
     caccgcaatt gctcagacca ctcaagatac ttctcgtgtg cctacgatcc ttgaaccttt      4680
     gaattcaaat ggaagggatt cagctctctc atggtacgat gagctacttg aaaaagtctc      4740
     tgaagcaccg gatgatcacc cagattttcg aacgtgtgac ggggtgttgc acaaatacgt      4800
     tcagaatacc agcgaacccc atgataatcg ttttgattgg aaagttgttc cccatcccaa      4860
     tgatcgtctg gcaatcgttc aggagtgcca tgacaactca atgcatcctg gtatagatcg      4920
     cacgttgagt cgaatccgat tgcgctactt ttggcctcga atggctaccg aagtacgaga      4980
     atacgtcact cgatgtgcca cctgcaaaga aacaaaagct ccaacaattt ccttaatccc      5040
     tcctttcgga gagcaacgaa tcaccacaca tccgtggcag attgttgctt tagacttcat      5100
     tggtccttta ccaaggagtc gcacccaaaa ccaatacatt ttgtctgtgg ttgatatgtt      5160
     tagcaagtgg ctcatgttgc ttcctttccg gaagatagac agcaagactc tttgcaaagc      5220
     tttgaaggat caatggttct atcggaactc agttccagaa gtattgatca cagacaacgc      5280
     gtcgtgtttt ctatcgcatg aattccgatc tttgtgtagt cagttcgaga tccgtcactg      5340
     gctaaactct aaataccact cccaggcgaa tcctgtggag cgggtaaaca ggaccgttaa      5400
     cgctgccata cgaacgtatg tgaaaacaga tcagaaactg tgggatagta aactatcaga      5460
     aatagaaact gttctgaata cgtccataca ctccgccaca gatctgacac ccttttttat      5520
     cacccatgga tacgaaatgt tccagaaagg aaccgatcat cagattagaa gtggggatcc      5580
     aattttgtct tctacgcaaa gggaaaagac aagttgaaat gttcgctgat atcaataaac      5640
     ttgttaaaaa gaacttagaa aaagctcatc gcgaagggca gaaacgttat gatctgcgcc      5700
     atcgaactta cgccaaaact ctggaggttg gccaattggt ctataggcga aatatgaaac      5760
     aatcaagcgc cattgaaaaa tataacgcaa aatatggtcc tcaatacctc ccagccaaaa      5820
     ttgttcgcaa aataggctct gcttcgtacg aacttgaaga tttagaaggg aaatcattgg      5880
     gcgtctggcc ggccgcacat ttaaagccgg gctaaagcaa ttctcatcgt ccactaattc      5940
     caccgaaaca ctgcttctgc taaacataac ttcgttcata actatccaat ccatgtccta      6000
     gataaataaa tcgataccag ggtagtcctg cgcctgaaaa caaatagaaa ttatttaaaa      6060
     tataagtctt tgtctgaatt ctgtagtctt ctctttagaa gctggtcgtt ttctgaattt      6120
     aggtttgcac cacaaccgtt gtggaacata gatttaattg tattagttat accacagttg      6180
     atccggtatt tcaacctaat tgtcaaaaga tagcgaaaat atgctataaa actttcgatc      6240
     gagggaccaa ttgttttgag aaaactgaaa ggtcacagat ctgaaacgat cacttccaac      6300
     cctcttcttt actcgagaaa gatgaacggg ttatacacgg cacaatattc taaggattag      6360
     ttcttgaaga ggtggatctt cctcttcagg ttacggaaga tgtacacaat agtcttctga      6420
     aatagtatag ggtataaatt agactaattt tgaatgtgag gaatgaatga aaggtatgaa      6480
     tgagttagca gggatcccga ctgagtgtga gagtgttatg ctgtgataaa gaaatgtagg      6540
     taataagaga aaagctgaat gaattaatat tagggtaaag aagggtttgt tattaactgg      6600
     agaatgaata agattctgta gttgaaatga tgacagatag agaataattg agatgaactg      6660
     tgaggagtag tatttataag gaaaacaaaa aactatgtga ttcagataag tgacgtttct      6720
     ttgaaaaaac tgattggatg atgcacagta tattttcatg agaaaaatta cctttgaaag      6780
     cgttcacagc ttgcaaggta atttttattc gggaggtggg atgat                      6825
//
ID   Gypsy-479_AA-LTR repbase;    DNA;    INV; 1492 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 25.10, Created)
DT   09-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-479_;
KW   Gypsy-479_AA-I; Gypsy-479_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1492
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1492
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3085-3085 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1492 BP; 420 A; 381 C; 353 G; 338 T; 0 other;
     tgttaccgtt aatatacaca gtcacaatgt ggatacaacc aaaacatata ggtttaggga        60
     actgttaatt gttagtagat taaattacct aaaaataggc tcaaaagaat atttaaaatt       120
     agatttgaat tatataaaag ttaggcatca aagggaatta tacccccacc caaaaatact       180
     tgctaacgct tcatgctata aaataactac ctaaagggga tctaaaacac atgcgacaac       240
     actagttccg gtagcaatag tcatcaagaa aaaggaggag gatggtaagg gaggaggaga       300
     gaatagagaa cgagagcaga cgagagtcta gttcggtccg tcaacccgga aagaagtgtg       360
     cttcgagatc accaaaagtg gcgtgtgaag tactgtggcc ggttcaacac cttcgaaagt       420
     ggttccgcgt gtgatcgagg acaacaggtt tcccacgttt acgggaacaa tttgtgccac       480
     cagacggatc cagacaccag atcaaggtca agtgccggtg gccagcgagt acccatagcc       540
     aatttcgctg cgccacacgt ggcgtgatcg ccgaagcgct cgtctctgag gttgagaccc       600
     ggtaaggttg tgtggtttcg cgcccgctta ctgaggaccc ttaaccgatg cgttccgcgt       660
     ccgccagcgg gcatttggac cattttgacg acagtaagaa ccacccttga cgaaataccc       720
     gtgccggtga ccagtgagta cccatcgcca atttcgctgg gtcacacgcg gcgagattgc       780
     gcatacgctc gttactgagg ttaggacccg gtaaggttgt gtggtttcgc gcccgcttac       840
     cgaggatacc ggaccaatgc gtaccgcatc cgtcagcggg caccgagaat cccttcaaaa       900
     tccatgacga gccaagccaa ccgtgagagc ctaaacgacc acatccaaga cccggtggag       960
     ccgatcagct cgaggacgaa ttaaggccgg aagccaatac caccaataac caggacaccc      1020
     acgttgctca gccatccaca aggagcgctt ttgggcattc agaccccccc ccccttcggt      1080
     aaacccggtc tgtatcgtca gcaaggtatc ggccagcgcc aagtcgccga ctccatcaga      1140
     caagccatcg aacaagccgc atgaaaaggt atgacaaatc ctcctcctcc tccttaccat      1200
     tatttaaaga gtagcaaggg ccccaacgtt ccagtaacgg ccgcaccgag ctcaatcaaa      1260
     attaaagaag catgtaattt gtacgtttaa ataaaatatg tatggttaag ctatattttt      1320
     ctgttacgat tatttttcaa acctgagcct ttcaaaccac ttgtctcgtt tggttctcca      1380
     ctttgtgctg ttttcacctt gttgttcagt tgtttgattc tggtgagacc tcttccagca      1440
     agccatcgcc gaccctgaga gggtatagcc acggggctag tcgagcatta ca              1492
//
ID   Gypsy-47B_DEl-LTR repbase;    DNA;    INV; 425 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   02-JUL-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47B_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-425
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7074-7074 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. 4-bp TSDs.
XX
SQ   Sequence 425 BP; 116 A; 113 C; 94 G; 102 T; 0 other;
     agttaactgt ggtcagccag accagagtcg ttgaccatag tcaacttgac aacaacgctc        60
     cggccaaatt gctggcctag caatgggccg gatgctcatg cacagacggc agacactgca       120
     tatttgcgtg gccgctgtga gctttgttag ctataagttt attccttaac ttcagtcttg       180
     tttcgaattc ttatgaataa agagctatgc tcaagaacac tactcaggcc atcgcctttt       240
     tattactttg aaatacgcct actgagctta aggccagagc acagagggca gctaccctct       300
     caccgtaatt ccagttgtca ccccctcacc gcagcagcag cgcgagggag ccagccaccc       360
     ggctagaagg aagacaacta attaattcga cagccaaccg gctacggatg tgaatataac       420
     taatt                                                                   425
//
ID   Gypsy-47_AA-I repbase;    DNA;    INV; 7029 BP.
XX
AC   AAGE02018863;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_AA_;
KW   Gypsy-47_AA-LTR; Gypsy-47_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7029
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018863; Positions   97547   90519.
XX
CC   Positions [3543-4004] - Reverse transcriptase
CC   Positions [5028-5504] - Integrase core
CC   'TACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           434..2188
FT                 /product="Gypsy-47_AA-I_1p"
FT                 /translation="MEGLGRSIASVEDLKARFGDLRVDFLNEDELDYELQI
FT                 RGIVCEEGAQMVRKRGNLREALKREKESRVTEHVKYELDSEVDYAFCVEKY
FT                 NQVLDCLVGAKIVPPRCQSSLLHLGVRIERLMPHVDETKQGTLRVFVDKII
FT                 ELLNLYFYQKRDGQRTASVESDLFLTDLLTVPTSFSGHSVPAIVTSSETVR
FT                 EENAVALLDPEDDDLIQCLQRLGCLDPNNSSGDMKKDVRDAMLAFEHELYL
FT                 LRRYKQASQSHCSTKTIFTTPITKTINVTSISSERSPNLTTSVVNILTSPR
FT                 VTTSVSRPTPPTVSSVCVSNTTGLNSNASIPYSRSYGCSGYPVSSSVYAHQ
FT                 SAYPTQFTSAFTGLPANTGWNPNYYGIHPVGFQNYPPVGYYPPHVPFSVPM
FT                 PIISTAPPVSVVPHVSILNPVMSTAWNPSTVSAPIVPPPVPIVPPQPAYTH
FT                 KSLPVSKWKIEKYAGTDQGSNLNEFLVLIQQLSLAERISEQELFDSAFHLF
FT                 TGPALNWFMMMSSQGLLRDWSHMVQELRKSFVHPELDSLVRSKIYQRRQQR
FT                 NESFQDYYYDMEKLFRSMTVQMGDLEKLDVVKRNMRGD"
FT   CDS           3456..5882
FT                 /product="Gypsy-47_AA-I_2p"
FT                 /translation="MLRIGIIERCHSDWSLNVVPVIKPTGKVRLCLDARKI
FT                 NERTVKDAYPLPHPGRILGQLPKAKYLSTIDLSEAFLQIPLEVSSRRYTAF
FT                 SIQGKGMFQFTRLPFGLVNSPATLSRLMDQVLGHGELEPRVFVYLDDIVIV
FT                 SETFDEHVNLLKKVANRLRAANLAINLEKSKFGVQELPFLGYLLSTEGLRP
FT                 NPDKIRAVVDYERPTTITKLRRFLGMSNYYRRFIQDFSGVTAPLTDLLKTK
FT                 SKILGWNEQAEDAFCSIKEKLISAPILVSPDFGKEFCIQTDASDVAVAGVL
FT                 TQEQDGSERVIAYFSHKLTTPQRNYHACEKETLAALLAVEAFRGYVEGAHF
FT                 TLITDSSALTHIMTTKWKTASRCSRWCLTLQQYNMTILHRKGRDNVVPDAL
FT                 SRSLAVVTTRSASQWYDKILEEVRKNPDDFVDFRIEDGKLFKFVSTPNLPY
FT                 DHRYEWKYVPPAADRDDIIRDNHDGAMHLGVDKTIDRIRQRYFWPGLAAEV
FT                 REYIQDCTTCKEVKGASVPVVPLMGDQRITKHPWQIIAMDYIGPLPRSKKG
FT                 YQHILVILDLFSKWIMLTPVRKIDSTSLCTIVRDQWFFRNSIPEVIITDNA
FT                 SCFLSKEFKSLLERFNIRHWLNAKYHSQANPVERVNRTVNAAIRTYVKEDQ
FT                 RLWDLKLSEIETILNSSVHSVTKMTPFFITHGHELFIQGSDHKDLPCEQEQ
FT                 TLEQRSGMQRKLLEKIYDVVEKNLKDAHESGKHRYNLRHRQHAKSFEIGQN
FT                 VYYRNMKQSSAVQNYNAKYGSMYLPAQIKSKLGSSSYEIQDSNGKSLGIWH
FT                 ASHLKPA"
XX
SQ   Sequence 7029 BP; 2214 A; 1403 C; 1483 G; 1929 T; 0 other;
     attggcgatc ctcgtaaaaa aatagatttc aaattgtttg gccataccac acaatttaac        60
     tgcactaggg gagactcact ccaccctttt caaagtttgt cgtgattagc ttgatattca       120
     atttcatttt tgcaacattc tgagtgatag gacagtccgt ttgatctctt gcaaaaacgg       180
     caaaaaagta gccaccgttg gtggcaagcc agaaaaacaa ctattgttct ctggaagcgc       240
     gatacaaaaa aatatagatc gcgtggttcg atacgattgc tcatcctttc attcttttga       300
     cgagatacgt tctctagtta aagttgtttg tgcgaagtaa aatattttct gattctgctt       360
     tggtgcgttt ctcgaacgct ggtcgcatta ttaggttttt ttttaatttt gtttgtgcaa       420
     aacatcataa acgatggagg ggctggggag atcgattgct agcgtggaag atttgaaagc       480
     gcgctttggt gaccttcgag tcgatttttt aaatgaggat gaactcgact atgagttgca       540
     aattagagga atagtttgcg aagaaggcgc gcagatggtt agaaagcgcg gtaacctcag       600
     agaagctcta aagagagaaa aggaatctcg ggttacagaa cacgtgaagt atgagcttga       660
     ttcggaagta gattatgcat tttgcgtaga gaagtacaat caggtgctcg attgtctggt       720
     tggcgcgaaa attgttccac cacgttgtca gtcgtcgttg ctacatttag gcgttaggat       780
     agaaaggcta atgccacatg ttgatgaaac aaagcaaggc acgttgagag tatttgtcga       840
     taaaatcata gaattgttga atctttactt ttatcaaaag cgtgatgggc aacgaacggc       900
     tagtgtggaa agcgacttgt ttcttacaga tttgttaaca gtgcccacgt cttttagtgg       960
     acactcagtc ccagcaatcg tcacgagttc agaaaccgtt agggaagaaa atgctgtagc      1020
     tcttttagat ccagaggacg atgatttgat tcagtgttta cagaggctag gatgtttgga      1080
     cccaaataac agttcaggtg acatgaagaa agatgtacgt gatgctatgt tggcttttga      1140
     gcatgaatta tatcttttgc gtaggtacaa gcaggcgtca cagtcacact gcagtaccaa      1200
     aaccattttc accacaccta tcacaaaaac gattaacgta acctcaattt cgagtgagcg      1260
     atcaccgaat ctcactacat ctgtggtgaa tattttgact tcgcctagag ttactacatc      1320
     ggtgagcaga cccacgccac cgacagttag ctcagtttgt gtttctaata caactggctt      1380
     gaattcaaat gcttcgatcc catattcaag atcatatgga tgcagcggtt atcccgtctc      1440
     gtcgtcggtg tatgcccatc aaagtgctta cccgacccag tttaccagcg ctttcacagg      1500
     attaccagca aataccggtt ggaatccaaa ttactatgga attcatccag taggattcca      1560
     aaattaccca ccggttggat attacccacc acatgtgcca ttttcggtac caatgccgat      1620
     tatttcaaca gcaccacctg tttctgtcgt accacacgtt tcaatattga acccagtcat      1680
     gtcgaccgca tggaaccctt ccacagtctc agctcccatt gtaccacctc cagtgccgat      1740
     tgttccacca cagccggcat acactcataa gtcactacct gtctcaaaat ggaaaattga      1800
     gaaatatgca ggtaccgatc agggcagtaa cttgaatgag ttcttggttt tgattcaaca      1860
     gttatcgctt gctgagagaa tctcagagca agagttgttt gattcggcct tccatttgtt      1920
     tacagggcct gctctgaatt ggtttatgat gatgagttct caaggacttt tgagagattg      1980
     gagccacatg gtacaggaat tgagaaaatc gtttgtgcat ccagagttgg attctctggt      2040
     gcgatctaaa atttatcaac gtcgtcaaca aaggaacgaa tcgttccaag actattacta      2100
     tgatatggaa aagctcttta ggtcaatgac ggtacagatg ggtgatctcg aaaaattgga      2160
     tgtggtaaaa cgcaatatgc gaggggatta aaaaaagtat ttattgtgga aacccactac      2220
     gaccttacaa caattggtcg aagctggtcg tcaaattgac gcctcaaatt tttcgcttta      2280
     caacaaaatg tttggatcgg aaaaaacgtc caacgttgtt aatgaagtta aatcattcaa      2340
     gcaaaacatc aaacctcaga acccacgacc aaatgataaa aaatggtcgg ataaccaaaa      2400
     atcaaaacca cctaacagtc ccaataaatc agttaaagaa ccacccaaat cacaaccaaa      2460
     accgaaaaga ccttctgagg acactgatcc caaacctcaa gttggaaagg aaaatcctca      2520
     agagggaaat cataacaata ttagacctct cagcagttta atcgcggctc ataaacctcc      2580
     tcaaatggat cagtgtattt attgccgaat gtcaaatcac gctgttgagc agtgtagatc      2640
     gattaaaggt cttttctgta ggatgtgtgg atttaagggg ttcgataccc aaaactgtcc      2700
     gttttgtcaa aaaaacgggt ttcaggcgac caaaagtcgc aggtcgtcga cgtcatccgc      2760
     gtgaacactt ttgcaaactc ggttacccca tttgactttt gggaaccaac tgtagacgaa      2820
     atgtacttta aaccggatga aaacgtgcaa gttattacca cctctattcc gaatgataat      2880
     agaccgtatg caaaagtcaa actttacggc catataacca aaggtttact tgattcagga      2940
     agcaacaata ccctgataag tgatcgcatt taccacaaat taaataaacc taaattacac      3000
     gagttaaaaa aacccggttg atctccggtc ggctagtggc accaagctaa atatacttgg      3060
     caagctgtat ataccaattt cttttgacaa ccaagttcgg ataatttcca cattagtaat      3120
     tgaaaacttg gtgttggatt gcattctggg gatggatttc tggaaaagat tcggaatttc      3180
     tccaaccata caacaatgcg cggtaataga acaagaacaa gaaccccacc ctgacgagtc      3240
     aaagtctgca ttgactgaga ccgaaactag tgaactagaa aatgtaaaaa ggctatttaa      3300
     agtggcagtg ccagaggaaa tttctttgac acccttgata acccatcgta tagaaataca      3360
     agacgactgg aagaaaaaac cagcagttcg tcagtcagta cccttatacg gtgtcaccca      3420
     aaattcaaca aaaggtatcg gaagatctgg atcgaatgct aagaatcgga atcatagaaa      3480
     gatgccattc agactggtcg ttaaatgtag tccctgttat caaacccacg ggcaaagttc      3540
     ggttatgtct tgacgctcga aaaataaatg agcgtaccgt aaaggatgca tacccacttc      3600
     cacatccggg tagaatcctt ggacaattac ccaaagctaa gtatcttagt acgattgacc      3660
     tttctgaggc atttttacag attcctcttg aagtgtcttc acgccggtat accgctttca      3720
     gtatacaagg caaaggtatg tttcagttca ctcgcctgcc ctttggcttg gtaaatagtc      3780
     cggcaaccct gtctcggcta atggaccaag tcttagggca cggtgaactg gaaccccgcg      3840
     tatttgtcta tcttgatgac atagtcatcg tgagcgagac ttttgacgaa catgtcaatc      3900
     ttctcaaaaa ggtggcaaac cgcttacgag cagcaaacct agcaattaat ttggaaaaat      3960
     ccaaatttgg tgtacaagaa ttaccgtttt tgggatattt gctgtccacc gaaggtttaa      4020
     gaccaaatcc cgataaaata agggcagttg tcgattatga acgtccgaca actataacaa      4080
     agttacgtcg ttttttagga atgagtaact actatcgtag gtttattcaa gattttagtg      4140
     gcgttacggc tccacttaca gatcttttaa aaacaaaaag caagatcttg ggatggaacg      4200
     agcaagccga agatgctttt tgtagcatca aagaaaaact catatctgcc ccaattcttg      4260
     tgagtccaga ttttggaaaa gaattttgca tacaaacgga cgcaagcgat gtggctgtgg      4320
     ccggtgttct tacacaagaa caggatggca gcgaacgggt catcgcgtat ttctcgcata      4380
     aattaacgac cccacaacgc aattatcatg cgtgcgagaa agagacgtta gcggcgcttt      4440
     tggctgttga agcattccga gggtatgttg aaggagccca ctttactttg ataaccgatt      4500
     cgtcggctct aacgcatatt atgaccacga agtggaaaac cgcctcccgc tgtagcagat      4560
     ggtgtctaac attacagcaa tataacatga ccattttgca cagaaaaggg agggataatg      4620
     ttgtcccaga cgcgctgtcc cgaagcctag ctgtggtaac aacgcgctca gcgtcacagt      4680
     ggtacgataa aatcttagaa gaggtaagaa agaacccgga cgattttgta gatttccgaa      4740
     ttgaggatgg aaaacttttt aaatttgttt caactccgaa tttgccttac gatcacaggt      4800
     acgagtggaa atatgttcca cctgcagcag atcgagatga tatcatacgt gacaatcatg      4860
     acggtgcaat gcatcttgga gtcgacaaga ccattgaccg aataaggcaa cgttacttct      4920
     ggccaggtct agctgcggaa gtacgcgagt acatacagga ttgtacgact tgtaaggagg      4980
     tcaaaggtgc ttcggtacct gtcgttcctc ttatgggtga ccaaagaatc acaaaacacc      5040
     catggcaaat aatagcaatg gattacattg gtcctttacc gcgaagcaaa aagggatacc      5100
     aacatattct agtaatacta gatctcttca gcaagtggat tatgctaacg ccggtgcgta      5160
     aaatcgacag tacgtcgtta tgcaccatag tacgcgatca atggttcttc aggaattcta      5220
     ttcctgaagt gatcataact gataacgcat catgctttct atcgaaagag tttaaatctc      5280
     ttttggaacg cttcaatata cggcactggc tcaatgccaa gtaccactcg caagcgaacc      5340
     ccgtagaaag ggtgaatcgt acggtaaatg cggcaattag aacgtacgtg aaagaagatc      5400
     aacgattatg ggatttaaaa ctatccgaaa tagaaacaat ccttaattcc tcagttcatt      5460
     cggtaactaa aatgaccccc ttttttataa ctcacggtca tgaactattt attcaaggat      5520
     ctgatcataa agatcttccg tgtgaacagg aacaaacctt agagcaacgt tctggcatgc      5580
     aaaggaaatt gttagaaaaa atctacgatg tcgtagaaaa aaatcttaaa gatgcacacg      5640
     agtctggaaa acacagatat aatctcagac atcgccagca tgcaaagagt tttgaaatag      5700
     gtcagaatgt atattaccgg aacatgaaac aatctagtgc agtccaaaac tacaatgcta      5760
     agtatggttc catgtatcta ccagctcaaa ttaagtccaa actaggatct tcttcttacg      5820
     agatacagga ctcgaacggg aaatcccttg gaatttggca tgcgtctcat ctgaaacctg      5880
     cataatgatc agtaggctaa atatatccta ttgatacaat ttgtctgtta tctcgtctga      5940
     aaagcctcga gtaaaactga atcgacgttt cccaatgtca ataaatttca tccgaaagaa      6000
     ggatccaagg cctttgtggg cagctaaaaa taaacaatcg agaagaaaaa gtatgttaga      6060
     agcagtatgt tcgaaaaccg tgtcacgatt cgcttcaaat ccaatgcaat tttcacattt      6120
     ttcttcgtta gttgaaaatg tgtgttgtgt tgttttgatc aagctcgaac tgaagtgatc      6180
     aattgtcatt gctttgaaag attgtatctt caattcgaac atgaatattg gctcacatcc      6240
     tccacaggcg acccagttcg aatttagcac atatttgagt ttgtttcaag tgagatcaag      6300
     tttgtgggtc tgtgttggag gtgtatctct ggattcgctg gagaccggag gtataatccc      6360
     gcggatgatc agtaaaagca tccttctgaa ttcatacgga gtcttaggat aaggaacgta      6420
     tatgacaccg aatagttgag atcgctttct gttcactcac ggtaaaacat cttgtatact      6480
     taattagccc ttgagtatgt ttcactttta gacgattgcg tctatagttt cactaccgtt      6540
     agttcaaatt ttgataaaat aggctgtaat tctctttttt ttcttcaatg tacagatagt      6600
     agtaagctag gttaaagaag tgcgaatgag tatgaatgaa tgggactgaa tgcataagta      6660
     gagggtaccc gcatgagtgt taggtgaatg acagagtgaa tgagattaat aatggaccag      6720
     taatcatgaa ccgcacaaag attagttttt ttttctcaaa acttgaggaa gtattaataa      6780
     cgctctttga cagagagaca ggttttctca gaaaagggtg aatagaatga gcacataata      6840
     tcgcaatcaa cgatgatcta aaaaaagagt atcacaaata cttttaaaca atggaaatat      6900
     aataatttaa atgatccgga cctactgcat aaaaattgtt aaaaattttg aatttgaata      6960
     tcaaataaca tgacgaatag agaaaaatta cccaatactt gtgtaatttt tccccgagga      7020
     ggaggatat                                                              7029
//
ID   Gypsy-47_AA-LTR repbase;    DNA;    INV; 1157 BP.
XX
AC   AAGE02018863;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_AA_;
KW   Gypsy-47_AA-I; Gypsy-47_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1157
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02018863; Positions   90518   89362.
XX
SQ   Sequence 1157 BP; 336 A; 271 C; 263 G; 287 T; 0 other;
     tgtaacctct cagagcttcc aacctaaaat aattaatttg atgatagctt tgcaaaaaaa        60
     aatacatata ttcaattgtc agtaaatgta aatgacatgc agagaaatgt ttgagttata       120
     taacaagtac caacgacgag tttgaatttt cccatctcat taatttcgcc tgagataccc       180
     cacttcgaaa actagatagg tagctcaacc gactcaactg ctcgaacgat aaagcttcaa       240
     cctgcaccaa aacccaactg cttgatcacc cgaagcgcgc aaaagccgaa tgctgtcggg       300
     gggcacgtga ttatacgagg gggtggagga gccgatcacc cgacgaaacc gaatctgcgc       360
     ccgctgagct ataaaagcag ccccatagca cctataagct ctctttgatc ctgtgaaggc       420
     gaaagttata gttcggcaaa ttttggagaa aatttagtgc tcaaagttaa ggagtgatta       480
     ctcgcacgat tggacagttg aagtgtaagg ctaaacgtta aggagcagtg gctcgcatag       540
     ctcaagtgtc cggtaattaa atcgcgatag gtaaaacgac taattttgaa gatagtgttt       600
     ccctcgcgtt caccgccttc atagaggccg aaccgaaccg tccgtcacca tacggttcta       660
     gtgaatttga ccgttcgtca ccatacggtt tagtgaatct cgtgaagatt tctacccagt       720
     ccagtgcggg taccacgtgt cagcccgagc ctcccaaacc cccgtcgatc cggtgttggc       780
     gctggagtcc ccatttccgg ctcagtccta ggagaacccc tattccggca agcacgtgct       840
     ggaatccctg cagcgacaac tgaacaggcc gttcggtact ccatcgagca tcaaaagcgt       900
     gagttgagtg aagcccaaaa tttcagtgag caaatttcaa taaaaagttc atagttaaaa       960
     attacattca tttcctttag tcgcgtactt tctttgcatg catcaactta atttgcaggt      1020
     tgagaatatt taaatacaaa agggtaagtg ttctttagtg caggttgcta gcggccctga      1080
     gatcaaaaaa gaggtgagct ggcctagggc gtacggacgt ccacgccaca gatgcatggg      1140
     cgtcgtcggt agttaca                                                     1157
//
ID   Gypsy-47_AnFu-I repbase;    DNA;    INV; 4871 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4871
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2931-2931 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..1455
FT                 /product="Gypsy-47_AnFu-I_1p"
FT                 /translation="MWQARENHVDSESDSISSSSESNHELVCISTAATLEL
FT                 SLNSLSIKSNEMEQTILEQLSVMQIAMQDLMQRQISLETALNKPHVQDQLD
FT                 RSLNPCTATRKNDFFVIPDPVKELPSFDGNKKQLSAWIAKVETTLNIFRAM
FT                 VPEDVFKLYEIVVSGKLTGKANDAVCQEGNPHEFEKIKKILIDAFGDRQDI
FT                 STYKCQLWQWKLTKNVTIHKYYNVHKEIVEKIKNIAKQNQKYCDNWDVISS
FT                 FIEEDSLAAFMAGLQEDYFGHVHAARPKDVHDAYTFLCKLKNKRDFDGIVQ
FT                 PNWNKFNSDKKTDRSLNASYNARSHAANYKPTHSNEAKDNHVPMDTSTTRS
FT                 KLTLNRSTNNHECFENNTNSNDDENFCVSSETCYPV"
FT   CDS           1419..4643
FT                 /product="Gypsy-47_AnFu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="KFLCFFGNLLPSITKNKHNFLPYIKVTDKSNNKTLNI
FT                 LIDSGANKNLLRPGILKNSKRCCDTRVKNMYGNYMVRFKSETFFLGLNLPP
FT                 IELYEMKFHSFFDGLLGTETLSTLKAILDYKAETLTLLNQKIQFYKYQIQP
FT                 SSREFHIISCTRNNYDPSIVKLLRIDHLNSYERERLLQTITKYKEIIPKDN
FT                 QKLSAITQVKHKINIVNNKPIYTKSYRYPHAHKAVVKEQIEEMLKSGIIKH
FT                 SNSPWNAPVWVVPKKSDASGKKQFRVVIDYRKLNDVTVDDRYPIPQIDDIL
FT                 DHLGRSEYFSTLDLKSGFHQIEMEPESRQKTAFSTESGHYEFLRMPFGLKN
FT                 APSTFQRAMNSILGDLIGKKCYVYLDDVIVFGTNLENHLSNLSQVLETLYE
FT                 ANLKIQINKCEFLKKNCEFLGHIVTKDGIKPNPDKIKEIVNWKLPSNEKEI
FT                 KQYLGLLGYYRKFIKDFAKITRPMTKYLKKSSLLNTSDPEYIEAFEKSKKM
FT                 LIMDPILAYPDFSKPFTLTTDASNYALGAVLSQIIDSKDHPIAFASKTLNH
FT                 AEINYSTTEKEALAIVWAVDKFKPYLFGHKFTLVTDHKPLIFIKNSCKNSK
FT                 IIRWRLDLENYDYNVVYKEGKTNVVADALSRKVEVCNNETIQTEPIPTDSN
FT                 TLHSAESSGDFYIHFTERPVNSYRNQIVFRIAQEEDVTIDTPFPNQKRTII
FT                 SKSSYNNTEIETYLRQFHDGKQSAIHAPEQLYQLIQDVCRTYSTETLSHFV
FT                 IAPNMVEDVVLEERQYALITQAHDRAHRGIQETEKQMKRAYYFPKMTIKIR
FT                 KIINACQPCSTYKYERKPYNIKISPRPIGKAPFERVHMDIFGIDKLYFLSL
FT                 VCAFSKHLQLVKIDSRNAVDIQTGLTQYISTFGIPKKIVCDHECSFRSTQI
FT                 RGFLSNLGTELEFASSSESNGQVEKTHSTILEIFNTNKHKNPELSTLETMQ
FT                 ITVALYNDSVHSSTEFTPNEIIFNQQNEMNPRAITESAKRIFDKVLYNLSK
FT                 AKTKMEKYNETKEDPPVIEEGKDVLIRKGVRKKLDPRYHLTRCIQNKRKTI
FT                 KIGRDVKRNKNKLRRIRN"
XX
SQ   Sequence 4871 BP; 1841 A; 909 C; 850 G; 1271 T; 0 other;
     ggcgcagccg tacggaatta ccagtgtggt tttaggtgtt ttttttttaa aagtggcagt        60
     ggctgattaa taaaagctac aacaggaatc cgcctaaggc atccgcgaca cgtaggttta       120
     tccgtcgtgt gagttgaggt tccccccgcc tactataata ccacgtgagt atctggtacc       180
     cgcttccaaa cacgacgttt taccgaaact ttcgtaaaga gatcgctttt tatcaacgtc       240
     tcttaattgt tttattcgcg tttcaataga aaaaaaacga gaaacaagtg aatttgtgtt       300
     agtgcttttg ttctgtgaat gtggcaagct agagaaaacc acgtggattc tgaaagcgat       360
     tctatttcat cctcatcaga atcaaaccac gagttagtgt gcatttcaac tgcagctaca       420
     ctggaattat ctctcaatag tctctcgata aagagtaacg agatggaaca aaccatttta       480
     gagcagctat ccgtaatgca aattgctatg caggatttaa tgcaacggca aatctcttta       540
     gaaacagcct taaataaacc acatgtgcag gatcagttag atcggtcatt gaacccgtgt       600
     acagcaaccc gaaagaacga tttttttgta ataccggacc ctgtgaaaga gctaccatcc       660
     ttcgatggta ataaaaaaca actttcggca tggatcgcca aagtggaaac tactctaaac       720
     atttttagag ccatggtacc cgaagatgta tttaaattgt acgaaattgt agtcagtggt       780
     aaattgacag ggaaagcaaa tgacgccgtt tgccaggaag gaaatcccca tgagttcgaa       840
     aaaataaaga aaattttgat tgacgctttt ggagatcgac aggatatttc cacatacaaa       900
     tgccaacttt ggcaatggaa attaactaaa aacgtgacaa tccacaaata ttataacgtg       960
     cataaggaaa tagttgaaaa aataaaaaat attgcaaaac aaaatcaaaa gtattgtgat      1020
     aattgggatg taattagttc ttttattgaa gaagattcat tagcagcatt catggcaggc      1080
     cttcaggagg attattttgg acatgtgcat gcagcacgcc cgaaagatgt tcacgacgcg      1140
     tacacatttt tgtgtaagct aaagaataag cgagattttg atgggatcgt tcaacccaat      1200
     tggaataagt ttaattcgga taaaaaaacc gatcgtagcc tgaacgcttc atataacgca      1260
     cgatcgcatg ctgctaatta caaaccaaca cattcaaacg aggcaaagga taaccacgta      1320
     cccatggaca caagtacaac acgttccaaa ttaaccctta atagatcaac aaacaatcac      1380
     gaatgttttg aaaacaatac aaattcaaat gatgatgaaa atttttgtgt ttcttcggaa      1440
     acttgttacc cagtataaca aaaaataaac acaatttcct tccgtacatt aaagtaacag      1500
     ataaatcgaa caataaaacg ttgaatattc ttattgattc tggtgccaac aaaaacctgt      1560
     tgcgaccagg aatacttaaa aactcaaaaa ggtgttgtga tacaagagta aaaaacatgt      1620
     atggaaacta catggtacgt ttcaaaagtg aaacattttt ccttgggcta aatttaccac      1680
     caatcgagtt atacgaaatg aagtttcaca gtttttttga tggtttacta ggcactgaaa      1740
     cattatctac tttaaaggct atcctagact ataaagctga gacgttgact ctattaaatc      1800
     aaaaaataca gttttataaa tatcagatac aaccatcatc gagagagttc catattataa      1860
     gctgtacaag aaataactat gatccatcta tagtaaaact ccttagaatt gaccatctga      1920
     attcatatga aagagaaaga ttattacaga caataaccaa atacaaggaa attatcccaa      1980
     aagataatca aaaattgtcg gcaattaccc aagtgaaaca taaaattaat atcgtaaata      2040
     ataaacccat atacacaaag tcatataggt atccacatgc acataaagct gtagttaaag      2100
     aacaaataga ggaaatgcta aaaagtggaa ttataaaaca ttctaactcg ccatggaatg      2160
     ctcccgtttg ggtcgtccca aaaaaatcag acgcatcagg gaagaaacaa ttccgcgtag      2220
     taattgatta caggaaattg aacgatgtta cagtggacga cagatatccc attccccaaa      2280
     tcgatgatat tctagaccat ttgggacgtt cagaatattt ttccactctg gatcttaaga      2340
     gcggattcca tcaaatagaa atggaacccg aatcaaggca aaaaaccgca ttcagtacag      2400
     aatctggcca ctacgaattc cttagaatgc cgtttggcct aaaaaatgct ccatcaacat      2460
     tccaaagagc tatgaattcc atattaggcg accttatagg aaaaaaatgt tacgtgtatc      2520
     ttgacgatgt tatagtgttt ggtacaaatt tagaaaatca cctctcaaac ttaagccagg      2580
     tcttagaaac actatatgaa gctaatttga agatacaaat taacaaatgt gaatttttga      2640
     aaaaaaattg cgaatttctc ggacacatcg taacgaaaga tggaataaaa ccgaatccag      2700
     ataagatcaa agaaatagtt aattggaaat tgccgtccaa cgaaaaagaa ataaaacaat      2760
     atttgggtct tttagggtat tatagaaaat ttatcaaaga ctttgctaaa attactagac      2820
     ctatgacaaa atatttaaag aaatcaagct tactaaatac atcagacccc gaatacatcg      2880
     aagccttcga aaaatcaaag aaaatgctaa taatggaccc tatacttgcg tacccagatt      2940
     tttcaaaacc atttacatta acaaccgatg cttccaacta cgcattaggc gcagttttat      3000
     ctcaaattat agattcaaaa gaccacccaa ttgcatttgc atcaaaaacg cttaaccacg      3060
     ccgagataaa ttactctaca acagagaaag aggctcttgc catagtttgg gctgtagata      3120
     aattcaaacc atatttgttc ggtcataaat tcacattagt cacagatcat aagcctttaa      3180
     ttttcattaa gaattcgtgt aaaaattcaa aaataattcg ttggagacta gacttagaaa      3240
     attatgatta taacgtagtt tacaaagaag gtaaaacaaa tgtagttgcc gatgcattaa      3300
     gcagaaaagt ggaagtatgc aataatgaga caattcaaac agaacccatt cctaccgatt      3360
     caaacacact gcactcagcc gaaagttcag gagattttta cattcatttc actgagagac      3420
     ccgttaatag ttatagaaac caaattgtgt tccgtatagc tcaagaagaa gatgtaacga      3480
     tagatactcc ttttccaaac caaaagagaa caattattag caaaagttca tacaacaata      3540
     ccgaaatcga gacgtatctt agacagtttc acgatggaaa acaaagcgct attcatgccc      3600
     ccgaacaact ataccaattg atacaagatg tgtgtagaac gtattctacc gaaactctct      3660
     cacacttcgt aatagcacca aacatggtcg aagacgtcgt attagaagaa agacagtacg      3720
     ctctcattac tcaagcccac gaccgtgctc atagaggaat tcaagaaacc gaaaaacaga      3780
     tgaaaagagc ctattatttc ccgaaaatga ccataaaaat aaggaaaatt ataaacgcat      3840
     gccaaccatg ttctacgtat aaatacgaaa ggaagcctta taacataaaa atttcgccgc      3900
     gaccgatagg aaaggctcct tttgaacgag tgcacatgga tattttcggt atagacaaac      3960
     tctacttctt atctctggtc tgcgcattct ctaagcacct acaactagtg aagattgatt      4020
     caagaaatgc agtagatatc caaactggac tgacacaata catctctacg tttgggatcc      4080
     cgaagaaaat agtttgtgac catgaatgct cattcaggag tactcaaata cgtggattcc      4140
     ttagcaatct cggaaccgaa ttggaatttg cgtccagctc cgaatcgaac ggtcaagttg      4200
     aaaaaactca cagtacaata ttggaaatat tcaacaccaa caaacacaag aatccggaac      4260
     taagtactct agaaactatg caaatcacag tagcattata caacgatagt gtgcattcat      4320
     caacggaatt tacacctaat gaaatcatct ttaatcaaca aaacgaaatg aaccctagag      4380
     ctattaccga aagtgcaaaa agaatattcg ataaagtgtt gtacaatttg agcaaagcaa      4440
     aaactaaaat ggaaaaatac aacgaaacga aagaagatcc acctgttata gaagaaggaa      4500
     aggacgttct cataagaaaa ggagtaagga aaaaattaga tccacgttac catttaacac      4560
     gttgtataca aaacaaaaga aaaactatta aaatcggcag agacgttaaa cggaacaaaa      4620
     acaaactaag acgaataaga aattagctga attgaatggg ttgtagattt ttctttttag      4680
     gtaaatagga atagtagatt aggcttatta gataggttat gcgaatttta taattagtta      4740
     ggaaatttga atttgaaaaa aaaattgtaa acattgtaaa caccacggaa cgacagccgc      4800
     tactctcctc gaagagagta tatcgacctc acttaatacg gacgaggacg tccgtcttct      4860
     tgccccggag g                                                           4871
//
ID   Gypsy-47_AnFu-LTR repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-186
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2859-2859 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, often ATAT.
XX
SQ   Sequence 186 BP; 54 A; 51 C; 34 G; 47 T; 0 other;
     agttatagga ttggacctca ccatctaaac acgcgcacgc acaagtgcgt tactcacgca        60
     cacagcaagg gaggccacat gcgtgctgcc aaccaacaac gttcctcttt cacgttccgg       120
     ctttcgaggt gttcacttgt cttacaataa aacacaacac aaaagtattc atcttgtatt       180
     gtaatt                                                                  186
//
ID   Gypsy-47_CQ-I repbase;    DNA;    INV; 2175 BP.
XX
AC   AAWU01016425;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_CQ_;
KW   Gypsy-47_CQ-LTR; Gypsy-47_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2175
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 473-473 (2011).
XX
DR   GenBank; AAWU01016425; Positions   88159   85985.
XX
CC   Positions [1085-1552] - Integrase core
CC   'CTGTG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..2152
FT                 /product="Gypsy-47_CQ-I_1p"
FT                 /translation="MGTQNMGRRFRYVSEAVRVAGSRGVNAKPRDTHTLLA
FT                 TPRIIACASKALSASEQKYPQSQKEVLSIVWGVERFSYYLISKPFVVRTDS
FT                 ESNEIIFDSEQRTGKRAVTRAETWALRLQSFRFKPKRVPGNQNIADALSRL
FT                 IDKSQIDEPFDDINEKHVLYALDAAHMNLSWNTIEIASETDEENCAVRSAL
FT                 HTGVWPENLRRYETQSKELRVLGSLVFKSDKIILPLKLRRTAIEIAHQGHV
FT                 GCGATKKLLRDYFWWPNMSKEAVEFVGKCEACLMVSRKNPPLPLSSRTLPQ
FT                 GPWEILQIDFLTLNGCGSGHFLVIVDMHSRFLQVIEMKTTDCTKTNAALCK
FT                 AFTTWGLPLIIQSDNGPPFQSQEFTDFWEDKGVRVRKSIPLSAQSNGGVER
FT                 QNQGIIKSISAAKAEQRNWREALQEYVHVHNTRKEHSRLGVTPFELLVGWK
FT                 YRGTFPALWETKSSEKVDKEQVAEDDAASKLCSKKFADNSRGAKESDIQPG
FT                 DRVVISIPQRNKLDPSFSRERYTVLARKGAKVVVRSDCGVQLARNVQDVKR
FT                 AQDFSVDSESVGDDADDTLTNVPPDARDHNSETEQQENRQPPATNNSSDVR
FT                 RNLDDSEAAQIPITSGDGSPTNNTGRPKRNILRPSKYKDMYLYNIFQ"
XX
SQ   Sequence 2175 BP; 591 A; 544 C; 581 G; 459 T; 0 other;
     atggcgcagc tgctcccaca gggtaagaat ccgttaaagt ttggtcgacg gatgaccgga        60
     taaccagttc aagtgaccgg gcgtttgcca ataatttggg accgttcgat ggggaaagtg       120
     gttttttttc caatatggac gccttctagc gagctgtgat ttttccgttt gatggattgg       180
     tattggttgg actccgaaaa ttgcgtgtag tggtgagatg ggcactcaga acatgggacg       240
     tcgcttccgt tatgtgagtg aggctgtgcg agttgccggt tcaagaggtg tgaatgcaaa       300
     acctcgcgac acgcatacac tcttggctac accccggatc atcgcgtgcg cttctaaagc       360
     tttgtcagcg agcgagcaaa agtaccccca gtcgcagaaa gaggtgcttt cgatcgtatg       420
     gggcgtcgaa cggttttcgt actatctgat cagcaagccg ttcgttgttc gtacggactc       480
     ggaatcaaac gaaataatct tcgacagcga acaaagaacc ggaaaacggg cagtgactcg       540
     agctgagacg tgggcactcc gtctgcaatc ttttcggttc aagcccaaaa gagttccagg       600
     taaccagaac atcgccgacg cgctgtcacg cttgatagat aaatcacaaa tcgacgaacc       660
     cttcgacgac atcaacgaga agcacgtttt gtatgccctt gatgccgccc acatgaacct       720
     ctcttggaac acgatagaga tcgcatctga aactgatgaa gaaaattgtg ccgttcgatc       780
     tgcattgcat accggagtgt ggccagaaaa ccttcgtcgc tatgaaacac aatcgaaaga       840
     gctccgcgtg ctgggttcac tggttttcaa aagcgacaag atcattcttc ctctgaagct       900
     tcgtcggacc gcgatcgaga ttgctcacca gggacacgtc gggtgcggtg ccaccaagaa       960
     gctccttcgg gactacttct ggtggcccaa catgagcaag gaggcggtcg agtttgtcgg      1020
     caagtgcgaa gcttgcctaa tggtatcaag aaaaaacccg cccctaccac tctccagccg      1080
     cacacttccc caaggacctt gggagatctt acagatagac tttctgacac tgaacggatg      1140
     tggatcgggg catttccttg tcatagttga tatgcactca aggtttttgc aagtcattga      1200
     aatgaaaacc accgattgca caaaaaccaa cgccgcgctc tgcaaagcgt tcactacctg      1260
     gggacttccg ctcatcatcc aaagcgacaa cggcccgcct tttcagagcc aagaatttac      1320
     agacttctgg gaagacaaag gtgttcgggt gcgcaagtcg atccccctca gtgcccagtc      1380
     aaatggaggc gtcgaacgac aaaatcaagg cataataaag tcgatttccg ctgccaaagc      1440
     cgagcaacga aactggaggg aagccctaca agagtatgtg cacgtgcaca acaccaggaa      1500
     ggaacactcg cgcctcgggg ttacaccgtt cgagctgttg gtgggctgga aataccgcgg      1560
     aacttttcca gcactctggg aaactaagtc ttcagagaag gtcgataaag aacaggtagc      1620
     cgaggacgac gccgcatcta aactgtgcag taaaaagttc gctgacaaca gcaggggcgc      1680
     caaggagtcc gacattcaac ctggcgatag ggtggtcatt tctatcccgc aacgtaacaa      1740
     actggacccg tccttttcga gagagaggta taccgtgcta gcaaggaaag gggcgaaagt      1800
     ggtcgttagg agtgactgcg gggttcagct ggctcgaaac gtgcaggacg tcaagcgcgc      1860
     acaagatttc agcgttgata gcgagtctgt tggggacgac gccgatgaca cgctgacgaa      1920
     tgtaccaccc gacgcgcggg accataactc ggagacagaa cagcaagaga atcggcagcc      1980
     acctgcgacc aacaattcat cggacgttcg caggaacctc gacgattcgg aggcggccca      2040
     gattccgatt acttccggag acggttcacc aacgaacaat actggaagac ccaagaggaa      2100
     cattctaaga ccaagcaaat acaaggatat gtatctgtac aacatttttc agtaatgagt      2160
     aggactaagc gagga                                                       2175
//
ID   Gypsy-47_CQ-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   AAWU01016425;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_CQ_;
KW   Gypsy-47_CQ-I; Gypsy-47_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-220
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 474-474 (2011).
XX
DR   GenBank; AAWU01016425; Positions   85984   85765.
XX
SQ   Sequence 220 BP; 87 A; 27 C; 71 G; 35 T; 0 other;
     tgtagtggat gtggtgagag agagagagag agagagagag agagagagag aaagagaata        60
     agcgaggaaa gatagagaga gaaaaagtga gagagagaga gagagcaaga aataaaagag       120
     attcttaata aacggcagtc gattgcttaa tctcaaccag taaagtcgtg cgttttattc       180
     cgtccggaaa tggacgaggc tggccaccag atccacgaca                             220
//
ID   Gypsy-47_DEl-I repbase;    DNA;    INV; 6679 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_DEl-I.
XX
NM   Gypsy-47_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6679
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 489-489 (2012).
XX
RN   [2]
RP   1-6679
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           637..2001
FT                 /product="Gypsy-47_DEl-I_1p"
FT                 /translation="MSNPFFEYRNNKQYSSDSESESEGQLHASTPILRPPA
FT                 PSTEMDPEQLRAVIQAVVSNALAEQTAQSQLREQALRNQIEELAGRVAAVS
FT                 TTSAPAHTPQIRTYKAIEIEDTVQCNEPLDAVKCLPEFAGAQETYVSWRQA
FT                 AVAAYHIFRRYDGSSRHYQAVIIIRSKVRGPADAVLSSFGTVLNFDAIISR
FT                 LDFTYSDKRPMHVIEQEMGTLRQGNLSLLQYYDEVEKKLTLLTNKATMSHD
FT                 ASAAEVLCEKFRDDALRVFISGLKRSLTDVLFSAKPKDMPTALALAQEVEA
FT                 NHERYSFAASFARSQEDRDKKQYPKAQERQQTPPQNSFQTGAAKNPYFTKQ
FT                 HKAQVHSAPRSDRLRENNSEPMDIDPSMSKMHKPPQAPAYQNRKPAVSDRS
FT                 GPIKRQRVNHVAQSAGETEEKYTAAASSAAAKIDDDAISEYDSDIINFLGE
FT                 DPCCPSSDEE"
FT   CDS           5199..6677
FT                 /product="Gypsy-47_DEl-I_3p"
FT                 /translation="MSKKIAKVQFHRFGLIFYLLLSLASAHITDYSQAKYI
FT                 PVIDGQILVWEEFAFVTHTANLSEYARVVEETENLISMFPLSHMKKLLSVD
FT                 TAHLQDLLESLGIHHRVARSLDFLGSVLKVVAGTPDAGDLEKIRFTEMKLV
FT                 ESSNRQIQINTKIQNQINQLTSTVNQILRSAKKSQVDTGHLYETLLARNRM
FT                 LMMELQNLMLAITLAKINIVSPNILDHEDLKSVWLEEPTNTPIGDLLSVSS
FT                 VKILQSVNVLHFIIKFPKIKLACKKITIFPVAHSETMLQILDNIIAECGGE
FT                 IHAIKNCSMSPGATFCRLASESSCAKELHAGGVAHCRTQQSDLHPITYVDE
FT                 GIIIINDRSAKVRVDNGTEVWIHGTHLITFDEXAVINETLFINHANAQKRT
FT                 PGAASSPLLNITANQDVLSLPYLHRLSERNLEFIKEFRNEIDNNQMHLAAT
FT                 IVGAICCALICIGLTYQRLSRAKRSAIQIREVIAELGSAEGGLNLEGG"
FT   CDS           1950..5054
FT                 /product="Gypsy-47_DEl-I_2p"
FT                 /translation="YNKFFRGRSLLPVIRRRVAGTNMRFLIDTGASKNFIR
FT                 PHKGLKGVRPVDSPFTIHSIHGGTTITNKCFVSIFNLKATFFILPDLTTFD
FT                 GIIGLDLLKQAGASLCLASGHLKWGTEVEQIDFHTCADVNFTNVDCSDAPP
FT                 LAKNAFLEMLKTRKKAFADPNEALPYNTSVVATIRTVSEEPIYAKLYPYPM
FT                 GAADFVNKEIEDLLKNGIIQKSVSPYNNPIWVVDKKGTDELGNRKMRLVID
FT                 FRKLNERTVSDKYPMPNISMILGNLANAKYFSTLDLKSGYHQIILAERDRE
FT                 KTSFSVNGGKYEFRRLPFGLKNAGSIFQRAIDDILREQIGKFCYVYVDDVI
FT                 IFSKDENSHIKHVDWVLKSLYDANMRVSGEKSSFFKKSVSFLGFIVTCNGA
FT                 TTDPEKVKAIKEFPEPKSVFEVRSFLGLASYYRCFIKDFAAIAKPISDILK
FT                 GENGTVSRHRSRNIPVQFSEAQQQAFQKLRNILASDDVMLRYPDYKKAFDL
FT                 TTDASAYGIGAVLSQEGRPITMISRTLKDREVNYATNERELLAIIWALAKL
FT                 RNYLYAVKDINIYTDHQPLTFAVSESNPNAKIKRWKARIDESGAKMFYKPG
FT                 KENLVADALSRQQLNVVEAEEAYSCAATIHSEVSLTHTIEATEKPLNCFQN
FT                 QITLEEARFPSKRSFVLFGNKRRHNIDFTCMESLLEELADTIVPKGVNAIH
FT                 CDLHTLAMIQDKLVRQFPATKFWHCKNRVTDVFAIAERREIITAEHNRAHR
FT                 SAQENVKQVLSEYYFPKMTKLANEVVQNCKTCARAKYDRHPKKQEIGESPI
FT                 PSHAGEMLHIDIFSTDKKYFLTCIDKFSKFAVVQPIPSRTIEDLKPALLQL
FT                 MNYFPKAKTIYCDNEPSLNSHTISTMLINHFGVGIANAPPLHSVSNGQVER
FT                 FHSTLLELARCIKIDKGITDTIELILIATAKYNRSIHSVINKRPADVVQTN
FT                 SEDLQMKIREKIKSAQDAVRSRENASRQNRVFEVGEKVLVKSNRRLGNKLT
FT                 PLCEERAVEADLGTTVLIKGRVVHKDNLK"
XX
SQ   Sequence 6679 BP; 2065 A; 1577 C; 1458 G; 1574 T; 5 other;
     ggcgctcaac taagtggtta ctagataccc acwggataaa tcaaaaaatt ttttggaaaa        60
     aacgaattca ccaagcatgt aagtgggccc ttcggccaaa acttttatgt cttcaaaaaa       120
     atttatgtaa ctgcagtgtc agggaggaca agcattgaat tctgtcccct acagcaacaa       180
     agcgaaagaa tttaaaatat attaataacg agtgtgwagt gagttttttt ttggaaaatc       240
     tcagtattca taattttcta atttataatt taacagttat taggttagtt atcttaaaca       300
     aacaaaatac aaaagctata attttcaatg cgaaattttt taacaacata ataaatttat       360
     tagttaaaat tatgccccat aatttttctt tctgtgtaac ggcgcatcgc tatttcgccg       420
     gccatctcag aggtcttttt tcgttttttc tcactgtata ctaaatataa ttttgtgcag       480
     cggccgcaca ttctgtcacc ctgcagacat tgttggtgtt tttattgtcc cgcgtatcaa       540
     aaggaaattc gaccccaaag tctttcgact ttgtctttgt tgtgcagcgc tttggcttat       600
     gcgcgcgaat ctctctgcga ctagatccgg ctgcccatga gtaatccgtt tttcgaatat       660
     agaaacaata aacaatactc aagcgactca gagtccgaga gtgagggaca gctccacgcc       720
     tcaaccccaa tactcaggcc cccagccccc tctacagaaa tggatcccga gcagctccga       780
     gctgttatac aggccgtcgt tagcaatgcc cttgcagaac agaccgccca aagccagctg       840
     agggagcaag cccttaggaa tcaaattgag gaattggccg ggcgagtagc ggcagtcagc       900
     accacgtcag ctccagccca tacccctcaa ataagaacat ataaagctat agagatagag       960
     gacaccgttc aatgtaacga gcctctggac gccgtaaagt gcttgcccga attcgcggga      1020
     gcacaggaga catacgtctc ctggcgacag gcggccgtag cggcctatca tatttttaga      1080
     cgatacgatg gcagctctcg ccactaccag gcagtaataa taatcaggag caaggttagg      1140
     ggacccgccg acgcggtact gtcgtcattc ggaacagtac tcaatttcga tgcgatcata      1200
     agtcgcctag attttacata tagcgataaa cgcccaatgc atgtcataga gcaggagatg      1260
     ggcaccctca ggcagggaaa tctttcactg ctgcaatatt atgacgaggt ggagaaaaaa      1320
     ctkaccctcc tcacaaacaa ggccaccatg tcgcacgacg cttcggcggc cgaagtcctg      1380
     tgcgaaaaat tccgggatga tgcccttcga gtattcatmt cgggattaaa acgcagcctc      1440
     acagatgtcc tcttctcggc gaagccaaag gacatgccaa cagcacttgc tttggctcag      1500
     gaggtggagg caaatcacga gaggtattcc ttcgcggcct catttgcaag aagccaggag      1560
     gatagggata aaaaacaata tccaaaggcg caagagcgtc aacaaacccc tcctcagaat      1620
     agtttccaaa caggtgctgc caaaaatccc tatttcacaa agcagcacaa agctcaagtt      1680
     cactctgctc cacgcagtga cagacttcgt gaaaataatt ctgagcccat ggatattgac      1740
     ccttcaatgt ccaaaatgca caagcctcct caggcaccgg cttaccaaaa caggaagccg      1800
     gccgtgtccg atcgttcagg ccccattaaa aggcagagag ttaaccacgt cgcgcagagc      1860
     gcgggcgaaa ctgaagaaaa atacaccgcc gcagcttcca gcgcagcggc caaaatcgat      1920
     gatgacgcca tctcagagta tgactctgat ataataaatt ttttagggga agatccctgc      1980
     tgcccgtcat cagacgaaga gtagcgggga ctaacatgag attccttatc gacacgggcg      2040
     catcgaaaaa tttcatccga cctcacaaag gattgaaagg cgttcgccca gtagactccc      2100
     catttaccat tcattcaatt catgggggta caactatcac gaataaatgc ttcgtctcaa      2160
     tattcaatct taaggctacc tttttcatac taccagactt gactaccttt gatggaataa      2220
     tcggcctcga cctattaaaa caggcagggg cgtcactctg cctagcttcc ggccacctaa      2280
     aatggggcac tgaagtagag cagattgatt tccatacgtg cgctgatgta aacttcacca      2340
     acgtggattg ctcagatgca ccgccattgg caaaaaacgc gttcttagaa atgctaaaga      2400
     ccaggaaaaa ggcttttgca gaccctaatg aggctttacc ttacaacaca tcggtggtag      2460
     ctaccatcag aacggttagt gaggagccca tatacgcgaa gttatacccg taccccatgg      2520
     gagcagcgga tttcgtcaac aaagagattg aggatctgct taaaaatggg ataattcaga      2580
     agtcggtatc cccttacaac aatccgatat gggttgtgga taaaaaaggg accgatgagc      2640
     ttggaaaccg aaaaatgcga ctagttattg actttcgcaa attaaacgaa agaaccgtgt      2700
     ccgacaaata tcccatgcca aatataagca tgatattagg caacctagct aatgctaaat      2760
     atttctcaac gctggacctc aagtctggct atcaccaaat tatactcgcg gaacgcgaca      2820
     gagaaaaaac ctctttctca gtaaatgggg ggaaatatga attccgcaga ttaccgtttg      2880
     gcctcaaaaa tgcaggcagc atttttcaga gggccatcga cgacatccta cgggaacaga      2940
     tcggcaagtt ctgctatgtt tacgttgacg acgtaatcat tttttcaaaa gatgaaaact      3000
     ctcacatcaa gcacgtagat tgggttctta agagcctgta cgatgcgaac atgagagtat      3060
     cgggagaaaa atctagcttt tttaagaaaa gtgtaagctt ccttgggttt atagtcactt      3120
     gtaacggtgc cacaacagac ccagaaaagg taaaggctat aaaagaattt ccggaaccca      3180
     aaagtgtttt tgaggtacga tcatttctag gcctagccag ctattatcga tgtttcatta      3240
     aggactttgc agcaatagcg aagcctatat cggacatctt gaagggggaa aacggaacag      3300
     ttagtagaca caggtcacga aacattccgg ttcagttttc tgaggcgcaa caacaagcgt      3360
     tccagaaact acgaaatatc ttggcgtccg acgacgtgat gctaagatac cccgactaca      3420
     aaaaggcgtt tgatctaacg acagatgcct cggcctatgg cattggcgca gtattgtccc      3480
     aagagggtcg gccaataaca atgatctcaa ggacattgaa agacagggag gtcaactacg      3540
     ccacaaacga gagggaactc ttagccataa tttgggcact ggccaagctg cgaaactatt      3600
     tatatgcagt aaaagatata aacatctata ctgaccacca gccattaaca ttcgcagtat      3660
     cggaatccaa tccgaatgcg aaaatcaaac gatggaaagc tcgcatcgac gagtccggcg      3720
     ctaaaatgtt ttataagccc ggcaaggaga atctcgtcgc ggatgccctc tccagacagc      3780
     aacttaacgt tgtggaggcg gaagaagctt attcgtgtgc ggccactatc cacagtgaag      3840
     tctcgctcac acacaccatc gaagcaacgg agaagccgtt gaattgcttt cagaaccaga      3900
     taactctgga ggaagcacgc tttccgtcta aacgcagctt cgtgctcttt ggaaataaga      3960
     gacggcacaa cattgacttc acgtgcatgg agtctctgct tgaggaactc gcggacacca      4020
     tagtccccaa gggcgtaaat gccatacatt gcgatctgca tacgctagca atgatacagg      4080
     ataaattggt ccggcaattc ccagccacca aattctggca ttgcaaaaac cgagtgacag      4140
     acgtttttgc aattgcggag agacgggaaa tcattactgc cgagcacaat agggcacaca      4200
     gatcggcaca ggagaatgtc aagcaggtgc tctccgaata ttattttcct aaaatgacta      4260
     aattagccaa cgaagttgtc caaaactgca agacctgcgc gagggccaaa tatgataggc      4320
     accccaaaaa acaggaaatc ggcgagtcac caatcccgtc ccatgcaggg gagatgttac      4380
     acattgatat cttttcaacg gacaagaaat acttcctgac gtgcatcgac aagttctcaa      4440
     agttcgcagt cgtgcaaccc attccctcta gaacaattga ggacctgaaa ccagcactgt      4500
     tgcagctaat gaactatttt ccaaaagcca aaacgatcta ttgcgacaat gaaccttcat      4560
     tgaattctca tacgatctca accatgctga ttaaccactt tggggttggc atcgcaaatg      4620
     caccaccctt acacagtgta tctaacggac aggttgaacg ctttcacagc accctgctag      4680
     agctcgctag atgcattaag attgacaaag gcataactga taccatagag ttgattttaa      4740
     tagccactgc caagtacaac agatcaattc actcggtcat taacaaaaga ccagctgatg      4800
     ttgtacagac gaactcggag gacttacaga tgaaaatccg agaaaaaata aaaagcgccc      4860
     aggacgcggt aagaagccgg gagaacgcat cccggcagaa tagggtcttc gaggttggtg      4920
     aaaaggtatt ggtaaaatcc aacagaaggc taggaaataa acttacaccc ttgtgtgagg      4980
     agagagccgt agaagcggac ctggggacca cggtcctcat taaggggagg gtggtccaca      5040
     aggacaatct taaatgatac aaccaacgat gtccttcttt attcattttt attacgcctt      5100
     taagccattt tgcataaatt cttactagct ataagtttca ttgccaccgg catccttctt      5160
     agtttaaatt tatttcattg gtggtgggat acctctctat gagcaaaaaa atagctaaag      5220
     ttcaattcca caggttcgga ctcatatttt atctcctcct atccttggcg tcggctcaca      5280
     taactgatta ttcgcaggcc aagtatattc ccgttattga cggccaaata ctagtgtggg      5340
     aggagttcgc gttcgtcact catacagcga acctctcgga atatgcgcgc gtagtggagg      5400
     aaacagaaaa tttgatcagc atgtttccac tgtcccatat gaagaagctt ctaagcgtag      5460
     ataccgccca cctccaggac ttgttggagt cgctgggcat tcatcatcga gtagctagga      5520
     gtttagattt cttaggatca gtgctaaagg tcgtagcagg gacaccggac gccggcgatt      5580
     tagaaaaaat cagatttacc gaaatgaagt tagttgagtc aagtaatagg caaattcaaa      5640
     taaacactaa aattcaaaat caaattaatc agctaacctc taccgttaat caaattctga      5700
     gatctgccaa aaaatcacaa gtagatactg gacacttata tgagacgcta cttgctagaa      5760
     acagaatgct gatgatggaa ttacagaatt taatgcttgc aataaccctt gccaaaatta      5820
     atattgtcag tccgaatatt ttagaccacg aagacttaaa atcagtttgg cttgaggaac      5880
     ccaccaacac tcccataggg gatcttttgt ccgtttcgtc cgtgaagatt ctacagtccg      5940
     ttaacgtttt acacttcatc ataaaatttc ctaaaataaa attagcatgt aaaaagataa      6000
     ccatttttcc agtcgcccat agtgagacaa tgctgcagat cctagacaac atcatagcgg      6060
     aatgcggcgg agaaattcac gccattaaaa actgctccat gtcaccggga gccacattct      6120
     gccgtttggc gtcagagagt tcatgcgcca aagaactgca tgcaggtggg gtggcgcatt      6180
     gccgaacaca acagagcgac ctgcacccaa tcacatacgt ggatgaaggg atcataatca      6240
     tcaacgacag gtcagccaag gttcgggtgg acaatgggac agaagtctgg atacatggca      6300
     cacacctcat caccttcgac gaamaggccg tgataaacga aaccctcttc atcaaccacg      6360
     ctaacgccca gaagagaact ccgggggcag caagctcccc cctactgaac atcactgcca      6420
     accaagatgt tctcagcctc ccgtaccttc accgcttgag tgaacgaaac ttggagttta      6480
     tcaaggagtt cagaaatgag atcgacaaca accaaatgca tctcgcagca actattgtag      6540
     gagcaatatg ctgcgcgctc atctgcattg gcctcactta ccagcgactt agtagagcaa      6600
     aaagatccgc aatccaaata agagaagtaa ttgcagaatt aggatcggcc gagggcggcc      6660
     ttaacttaga agggggagt                                                   6679
//
ID   Gypsy-47_DEl-LTR repbase;    DNA;    INV; 545 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_DEl-I;
KW   Gypsy-47_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-545
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3091-3091 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. AG-TT termini. 4-bp TSDs.
XX
SQ   Sequence 545 BP; 163 A; 155 C; 112 G; 115 T; 0 other;
     agttaactgt ggccagccga actaaagtcg ttgaccacag tttacgtaaa caacttcgct        60
     ccggccaaat tgctgaccat gcaatgagcc ggatgctcgt gcgcagacgg caaacactgc       120
     atatttgcgt ggccgctgcg agcctctgtt agctttaagt caatccctta agtttagttc       180
     tgatttgaat ccaataaaga gcacatcgct cgtaaaacaa actccggcaa ccgccgttaa       240
     ccaatttatt atttgaacac tgactgagtc tctaggccag tagtgaacgg agggcagtta       300
     cccttccagc gtaatcgtca taactcttca gtggacgaaa gctgaccgtc ggccaaccgg       360
     ccacctacct acaggagata caaggaatca ccatccccgt atcaacgtga accggacgac       420
     cgtccaccta cctacaagag ctacgcagaa ccaccatcct cataccaacg taaatcgacc       480
     aaaccggcga tcaacaacgg gactgcagcg agggactaac tgcaataaac ctataataac       540
     taatt                                                                   545
//
ID   Gypsy-47_DWil-I repbase;    DNA;    INV; 7292 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_DWil_;
KW   Gypsy-47_DWil-LTR; Gypsy-47_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7292
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1863-1863 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [4623-5132] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1028..2086
FT                 /product="Gypsy-47_DWil-I_1p"
FT                 /translation="MEPQANTPEASDLPLSQASIDQVIARALSEGLTQMNQ
FT                 VVAQSMTQVSQTLSQTMSQAVAQMTQSLEITLQRAASNGPLLSENVASRAS
FT                 IQPSGQRQTFEELFQIPPRESQSQRPNQTTYPSTSMMNGGASPSSELRADR
FT                 VSQIITNWKIRFSGHSSIAVDDFIYRVEALTKQTLNNDLELVSRYASNLFE
FT                 GAASDWFWRFHRSVPLVTWSQLRVALRAQFQDGRTDLEIRTAMFQRKQRPN
FT                 ESFDSFYDAIVTLGDRLAVPLTESALLDVLKANLLQEIQHEILYVPIMSAS
FT                 HLRHVVCTRERFMQSVNKSVTTTMPRSTPKRQVHELEFSATNVELETDPDI
FT                 DPEVEMLLLT"
FT   CDS           2337..5501
FT                 /product="Gypsy-47_DWil-I_2p"
FT                 /translation="MHLREFKSPLCANTKKMRGIKRLIQYRKKHKLEKTAV
FT                 LDSMIDDSLDWRPYADVNLFGRELKGLMDTGASISCVGGNLAAELVNELLP
FT                 LKTVKTMVHTADGQKQAILGKTLTSVSFQGIEKPITLYVVPSLAQNLYLGI
FT                 DFWRAFNLLPAFLAHKGKEPTVACINLDSELNVSLSESQKKHLLKTIQLFP
FT                 SFEAKGLGKTSWLSHEIDVGDAKAIKQRHYAVSPAIEKLMYQEIDRMLALG
FT                 VIEESNSPWSSPVVLVRKPGKVRLCIDSRKLNEVTIKNAYPMPLIDGILSR
FT                 LPKAEFISSIDLKDAYWQIPLAASDREKTAFTIPGRPLYQFTVMPFGLSNA
FT                 PQTMSKLMDRVIPPSLRNEIFIYLDDLLVVSESFERHISVLSELANRLILA
FT                 GLTINVRKSSFCLKEVKYLGHVIGNGTIRTDPDKVSAIQEFPVPKSVKQVR
FT                 RFLGLTGWYHKFIKNYAGIAAPISDALKQKRKFIWSEEAQKSFDRLKYSLC
FT                 TAPVLHSPNFNAPFSIHCDASHTGVGGVLMQIDSEENEVPIAFMSRKLNQC
FT                 QRAYSVTEKECLAAVLCVKKFRAYIEGQEFSIITDHASLKWLMTQVDLSSR
FT                 LARWALKLQGFSFKIMHRKGSQNIVPDALSRVHTDDISAITLANGFDLSSD
FT                 AFDADEYKDLKAKIQLKQSQLPDVKVIDKYIYRRTEHASGDRVADDLCWKL
FT                 WIPKSLVLDVIQQNHEDHLAAHSGINKTLERIRRYFYWPNLIGDVKEFIAN
FT                 CSVCKTTKHSNTYLRPPMAKSEQTYRVFQKLYIDFLGPYPRSKLGNIGIFV
FT                 VLDHFTKFPFLKAVRKFTADAVITYLETELFHCFGIPEVVVSDNGPQFKSH
FT                 QFKALLEKYKVRHSFTAAYAPQANASERVNRSVLAAIKSYVNKDQTDWDEN
FT                 LSSVACALRSSWHSAINNSPYRVCFGQQMITNGATYPLLRSLNLLEDRSVQ
FT                 FDRTDSLEIIRQTAIKAVAKQHERNEKTYNLRSRDVSFQPGQEVYRRNFQL
FT                 SNFAKGFSAKLAPTFIKARVRQRIGTSYYELEDMQGRMIGKFHAKDIKQ"
XX
SQ   Sequence 7292 BP; 2229 A; 1485 C; 1508 G; 2067 T; 3 other;
     gataagataa aatttttggc gcccaacgtg gggcccgatt cggctgcccc aaccagatag        60
     taattttctt gcgctagtcg tgttatctga accgctgggt ttatgctatc gactagtatc       120
     ccatttctcc tgtgaaattt atgtaatcat agtagtgagc agtgttagta gtgattggaa       180
     ttatttaagt taagtacctc acttaaatac ccgcactgac taagaaacgc taatcattga       240
     cttagcaatc cccgtttgcc gtaatctatt gttcgtccct ggacgccgaa ttagtggcca       300
     agtgctaccg tcggaccgga ctcaattgat atgtcggtct tcaaactgca cccgtttgtc       360
     tggtcttata aagaatgaga ggtttgttac ctggattcag ctttggtgga taaatactac       420
     cgactgcccg gaataaattt tagaattcct gtgacatcag cattggactg caagccagga       480
     cagctggagt caagtaatgt ggcattaagc taccacttag ccgcaatact ggccaagcag       540
     cgcaatgcga gacaaaaatt tgtttcctcg tatgtgcttc gtctatgttt tcaactatct       600
     attttgtagt atctagtgta catttaggct gacctttaac ttttgcagac atggttgtat       660
     ggtttcccgg ttttagatga atttttctga tttaccataa tattgcatta tacccagttt       720
     gatatagaaa agtgttatat atatttagat gtacaataat aataagaata tttcaatcga       780
     agttatagta agttatgtcc gtactcgata kttccgatag tttggacaga tctgaagaaa       840
     ttagtagaag ctgtggcatt tgtgtgcggg agttggactt caacgcagag tggacaacca       900
     ccccctgcaa tcattcattt cacattggtt gcttttcgct tcgcgaagga gctaaatcag       960
     gcggcggaga catgccgatc ttaagatctc acgtaccgtt gcaggatcaa ctgaggctaa      1020
     cccagaaatg gaaccacagg ccaacacgcc agaggcatcc gacctgccgt tatcacaagc      1080
     aagcatagat caagtaatag cccgagccct ttccgaaggc ctcacccaaa tgaatcaggt      1140
     agtagctcaa tcgatgactc aggtctccca aaccttgtcg cagaccatgt ctcaggctgt      1200
     agcccaaatg acccagtctt tagagataac tctacaacga gcggcgtcta atggcccact      1260
     actttcagaa aacgtagcat ctcgagcatc catccaaccc tcgggacaaa gacagacatt      1320
     tgaagagtta tttcaaatcc ctccacggga aagtcaaagt caacgaccca atcagactac      1380
     gtatccaagt acgtctatga tgaatggtgg agcatcgcca agttccgaat tgcgtgctga      1440
     tcgggttagt caaataatta cgaattggaa aattcgattt tcaggacatt cgtccatagc      1500
     ggtagatgac tttatatata gagtcgaggc cctcacaaaa caaacactca ataatgattt      1560
     agaacttgta tctcgctacg cgagcaactt atttgaagga gctgctagcg actggttctg      1620
     gaggtttcac cgaagcgttc cactagtgac ctggtcacag cttcgggtgg cactaagagc      1680
     acaatttcaa gacggaagaa ccgatctaga aattcgtacg gccatgtttc agcgaaaaca      1740
     acgtccaaat gaatcctttg atagttttta cgacgctatc gtaacactgg gagatagatt      1800
     agccgtccca ttgacagagt ctgcattgtt agatgtgctg aaggcaaatt tactacaaga      1860
     aattcaacat gagattttgt acgtaccaat aatgtcggct tcgcatttgc gccacgttgt      1920
     gtgcacacgt gaacgattta tgcaatcggt aaataagtcg gtgacgacaa ccatgcctag      1980
     atcaaccccg aaacggcagg ttcatgaatt agaattttcg gctaccaatg tagaattaga      2040
     aaccgacccg gatatagatc ccgaggtaga aatgctgcta ttaacttaac ttgttggaat      2100
     tgcaaagaaa atggacatag atatcaggat tgcgatgcag agcgaaagat attttgctat      2160
     ggctgcggtc aacctgatgc ctacaaacct acttgtaatc gatgtaataa ttcaaaaaac      2220
     ggagttcgcc gtgcactgtc gaaaagtgca ctcaaactga acccggtgaa caccctttag      2280
     gggaatcctc ggtggattcc tcactaccaa ctttgtcaca actcccaact attcctatgc      2340
     acctacgaga gtttaaatct ccactatgtg caaatactaa aaagatgcga ggaattaagc      2400
     gattaattca atatagaaaa aaacataaat tagagaaaac ggcggttttg gattcaatga      2460
     tagatgattc ccttgattgg cggccgtacg cagatgtgaa cctctttgga agagaattaa      2520
     agggtctcat ggacactgga gcgtcaatta gttgtgtagg tggaaatttg gcggcagaat      2580
     tggtcaacga attgctaccc cttaagacgg taaaaaccat ggtgcacaca gcagatggac      2640
     aaaaacaagc cattctagga aagactctta cctctgttag ctttcaagga atcgaaaaac      2700
     caataactct ttatgttgta ccctcgctgg cacagaatct ctatttaggc atagactttt      2760
     ggagagcctt taatttgtta ccggcctttt tggcgcataa aggaaaagaa ccaaccgtag      2820
     cttgtattaa tctcgatagc gaattaaatg tgtcattatc cgaatcccag aaaaaacact      2880
     tacttaaaac cattcaattg tttccatcct tcgaggcaaa aggattagga aaaaccagct      2940
     ggctgtcaca tgaaattgat gtaggtgatg caaaagcgat caagcagcgg cactatgctg      3000
     tatctccggc catagaaaaa ttaatgtacc aagagataga tcgtatgctt gcccttgggg      3060
     taatagaaga atcaaatagc ccctggtcat cacctgttgt actggtgcgc aaaccaggaa      3120
     aagttcgatt atgtattgac agtcgaaaac ttaatgaagt cacgattaaa aatgcttatc      3180
     ctatgccttt aattgacgga attcttagtc ggttaccgaa agcagaattt atttcaagta      3240
     ttgatctaaa ggatgcttat tggcaaatac cgctagccgc tagcgaccgc gagaaaacgg      3300
     catttaccat accaggaaga cctctctatc agtttactgt aatgcccttc ggtttgtcaa      3360
     acgcacctca aacaatgtcc aaacttatgg atcgagtgat accaccaagt ttgcgaaatg      3420
     aaatttttat atacttagat gaccttttag tagtttcgga gtcctttgag agacatattt      3480
     cagtattatc cgagttagct aatagactaa tcctagcggg acttacaatt aatgtgagaa      3540
     aaagcagttt ttgtctcaaa gaagtcaaat atcttggcca tgttattggt aatggaacca      3600
     ttcgaacgga ccctgataag gtgtcagcga tccaagaatt cccagtgccc aagtctgtaa      3660
     agcaagtacg taggttttta ggtctcacgg gatggtatca taagtttata aaaaattatg      3720
     ctggtattgc cgcacccatt tccgacgcgt taaagcaaaa acgaaaattc atttggtctg      3780
     aagaagcaca aaaatcattt gatcggttaa aatattctct gtgtacagcc cctgtactac      3840
     atagccctaa ttttaacgct cctttttcta tacactgtga tgctagtcat acaggtgtgg      3900
     gaggtgtact tatgcaaatc gatagcgaag aaaatgaagt gccaatcgcc ttcatgtcac      3960
     gaaaactaaa tcagtgtcaa agggcttatt ccgtaacgga aaaagaatgc cttgcggctg      4020
     tcctatgtgt aaaaaaattt cgagcttata ttgagggtca agaattctct attattacag      4080
     atcacgcgtc cctaaaatgg ttaatgacgc aagttgactt aagttctaga ttggcgcgat      4140
     gggcacttaa actgcaagga ttctcattta aaataatgca taggaaaggc tcacaaaata      4200
     tagttcctga cgctttatcc cgagtacata ctgatgatat atcagctatt accttagcga      4260
     atggtttcga tctgtcgtca gacgccttcg acgctgacga atataaagat ttaaaagcta      4320
     agattcaatt aaagcaatcc cagctacccg atgtcaaggt tatagacaaa tacatttatc      4380
     ggcgaacaga acacgcatcc ggtgatcgtg tagcggatga cctgtgctgg aagctttgga      4440
     ttccaaaatc gttagttctg gatgtgatac aacaaaatca cgaagaccac ttagcggcgc      4500
     acagtggaat aaataaaaca ctggagcgga tcagacgcta tttttattgg cccaacctaa      4560
     taggtgatgt aaaggaattt attgcgaact gttccgtttg taagactact aagcattcga      4620
     acacctattt gcgtccccca atggccaaat cagagcaaac atatagggtt tttcaaaaat      4680
     tatacataga ctttttaggc ccatatccca gaagcaaact cggaaacata gggatcttcg      4740
     tagttctcga tcacttcact aaatttcctt ttttaaaagc tgttcgaaaa tttactgcag      4800
     atgctgttat tacctatctg gaaacagaat tgttccattg ttttggcatt ccggaagtag      4860
     ttgtatcaga caacggaccc cagttcaaat cacatcagtt taaagcactg ctggagaagt      4920
     acaaagttcg acattccttt accgcagcgt atgccccgca agcaaacgcg tccgaacggg      4980
     taaatagatc ggtgttagcg gcaataaagt cttatgtgaa caaagatcag accgattggg      5040
     atgaaaacct tagttcagta gcatgtgcgc taagatccag ttggcactcg gccatcaata      5100
     atagtccgta ccgtgtatgt tttggccaac aaatgataac gaacggtgca acttaccccc      5160
     tgttaagaag tttaaaccta ttagaggata gatctgttca gtttgaccgt actgattctc      5220
     tggaaataat tcgtcagact gcgatcaagg ctgtagcaaa acagcatgaa cgcaacgaaa      5280
     aaacgtataa tttgagaagt cgagacgtgt catttcaacc aggtcaagaa gtttaccgac      5340
     gtaattttca gttaagtaat tttgcaaagg gtttctcagc caagttagct ccaacgttta      5400
     taaaagccag agtccgtcag cggattggaa ccagttatta cgaactagag gatatgcaag      5460
     ggagaatgat agggaaattc catgcaaaag acattaaaca atagggcaat tattttcttt      5520
     actccaagcg gtatcccact ttgatgttta acaaccacca aagtgtgatt ttgtcgggga      5580
     ggtgtgtaac atgcgcttgt cgttcaaaat ttgaaaactc aacagaaaat ggttaatcgt      5640
     ggaaacaacc catttagctt gtttttagta cccgaatcag tacatagtgt tatcgataat      5700
     ttatgatctt acgtattcac gtaagtcgtc acgtatcgat cggtgagata tcggcttaaa      5760
     gctcagccct agattaaaga atattggcga aaggaaaatt aaaagattaa aatacgcgtg      5820
     gcctcgttct ttcttaactc aactcccaaa ggagacggag gtgctacaat cctcgctgcc      5880
     aacttcacgg caatctttgc tgcacccacc gcgtgtatcg tgcaagaaaa aatataaccc      5940
     tttcaattgc atccttcata ggattgccca acaaaacacc caacttggtt ctggtgtagt      6000
     ttctggtagt gcattggaga gaatatccgc ggagcgcctg tgatttttcg cagaaattaa      6060
     ttccgcgtcc ggtggcgttt tggctatcgc cgctccaatc ggaataaatt tattccaaaa      6120
     tttttgtggc tgtggtgtcg ctctccatag ggtaaatata tatataattg tttgacgtgt      6180
     agcttattaa cctgttccta ctagggactg gcaccacaag tacgtagcag attacccctg      6240
     agtggtaggc cgccaagtct gatttttcaa ctgaggaaag aggactcagt ctcaatgaat      6300
     taacgaaact ttgagcgaag gaagttttaa cctgcgcctt ctgtccattt ttgaccggac      6360
     tcattccgaa aaaagcacgt ggttttgtgc agtgcagcgc aggatgggtg caagcgttta      6420
     aaagcccttt caaatttaat tgtgtctatg cattcgagcc tctcggtcct gccaatgatt      6480
     atcgcgagta cttaaccaaa mgcttgaatc cgtggaattc aggtcttact acacgtgtac      6540
     ccaacgaagc agttgcaaca cattggcatg acctagggac cgttcgaaga caatgttctt      6600
     gtaatactta gacatccaat acttataaga gttatttgtt cacgatacga ataatgttaa      6660
     tgttaatgtg cttaatcgaa aacgggtgct cccaaaccaa atcagaggct tctgactacc      6720
     ttaaatcatc ttatctattt ttgaacagcc tccgcttcga aagatctttc gccgctggac      6780
     taaaactgta agtcaaacca taaaagaaaa attattaatt gattcgggtt attcgttttt      6840
     ggagcctttg aatatgttgg acgttggtgc cattgccaat acttgaattt attaggaaat      6900
     ttaaccgtct agttkttatt tttatccttt tctctcccgg catcagtttg atatgattcg      6960
     attttttgta aatttgatta aatttggttt ttgtaaccta atctcaagat aacgagtaag      7020
     ataattatgt ttgataaccg cattgctgca tcgtatatag tatgaaattg aggataagat      7080
     ccaaacttat ttttcgacca gtatttagtt taagatttca aagtatgaag ataagcttga      7140
     atagcccaaa agaacaaatt cggtaatcag taaccggtaa tttcgtatta atcatacttt      7200
     agggacctct acatattaac ttcattaatt ctgaataata ttaagttcgt ttgtttccga      7260
     aagagatatt aagaatgaat taaattagga aa                                    7292
//
ID   Gypsy-47_DWil-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_DWil_;
KW   Gypsy-47_DWil-I; Gypsy-47_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-510
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1864-1864 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 510 BP; 139 A; 122 C; 99 G; 150 T; 0 other;
     tgaatcctgc cttgttcata agtttagaaa ttaataaaac tattgttctt tgaaatgaac        60
     tccctataat cgttaaattt tggggaacca tgcaaccgac tgagagataa aaagaggccg       120
     taagacatgt tggagggatc ctcaattcag acgtggcccg aggatcatgg tagggtgggc       180
     gttcacatga taggcctata ggatatcatg acataaacca acatgtgtgc ctcctgacac       240
     tacatagttt aacgtgttct tgtttctggt ctcctcaggc cttctttctt tcacatctaa       300
     acctgtaccg ttatcccttg gtgtccttaa gtacgcgaat ttaaaatttt cgtctgtatc       360
     gaatgtgagt aactatagtt ctggctaatc tctatcgtat aacccactcc cagccgacct       420
     gaccctagcc gaacctaccg cgtactcggc cagcactatg aacgaacatc tgctcaacac       480
     tccttgtgag attcaacgtt acatgctaca                                        510
//
ID   Gypsy-47_LMi-I repbase;    DNA;    INV; 6754 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6754
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(778..1302,1251..1796)
FT                 /product="Gypsy-47_LMi-I_1p"
FT                 /translation="MGNLECKIGDVETKLSKGITDNTEHIVALERVVKTES
FT                 DLMQQHKVDVEQQFQAHRQETQSKVDHLDVKITNVEKGVLKCVEKCDQNVI
FT                 DLSRKVSHIQDDVVTKMLNCNPLNFGSVHMKCYPGDGNIHPKDFIKXCTDN
FT                 FTFDMTDNTKIKFVKRFLDKDALSGQIKLLTQTYHMQRCSLWANKIVDPDL
FT                 SYVEFERKFFFEKFWSSREQACIKSAFLNGPMYKESDGTMKEFCEKQLRKL
FT                 VHIDKPLDDVTIIDALQRKLPWKIQKGLDYAPDESIDLFLNFVDKLDRRVE
FT                 REKEFNQNKQNRPSNRGWNXPNERNNYDDRNRGMGEVMVIIMTITGHTMET
FT                 ITVMGLRENRRISE"
FT   CDS           join(1930..2352,2310..2639,2670..2963,2918..3262,
FT                 3232..3624,3690..3869,3899..5077)
FT                 /product="Gypsy-47_LMi-I_2p"
FT                 /translation="TFGKQSRGEQFCNYGDRNRGHVVNNVVFDAKFWKYVN
FT                 DNNNDVTNNCVTNECEEIELDSDTISNLYDNDKNVEDRDSNLCDLVELFDE
FT                 ERDCNQNDSIELDSINANCMSDIDSNCSDFVSEIELSDSQVRRTVFFLMYY
FT                 KNPSEEDCILSDVLQELDGMIHVELKDVDSEVSDVSCEIGNGEKKCVGKKS
FT                 DKEIISIEVRDVLNDDVENSDVVNCDKVMQIINERNQVVILILALTMISVM
FT                 TNQILAMSLKKTSDHVNDMSFDKVIDDLLYEKVSSNENVISGSPYIFIKLX
FT                 NWEGECLLDTGXPICGISKQLRNKICKTKDFVEVPVVGVKIKGATGNLAKL
FT                 SSHRYYRSNGKSSKTIKSQVLLTFSIEGMKFTQGCLVIPDLSESVLLGADW
FT                 LTKVNLNFDWKNKKIILTEPSDKICIQTDLLIRNCVDTSNLISKVSCKNQF
FT                 SVYDEEYVEGILNFMTMQIGDSEFYDYADLVNKKVEEADELDDREKDQLKD
FT                 ILWKYSDVFSDKPGKVKNYECKIKMKPHNPFFIKPYGIPFSKRQAVEQKLQ
FT                 KMEDWGIIQRGESQYNNPLVIISKKTGGVRLVLDSRQLNKFIERNRSPLQI
FT                 SSGSFRIQFQAIYCISYGGRCYVYCVVPFGLNISVAEFIRALDPVLGKGLS
FT                 KSCSLCKISSTQNKEELKSFLGICGYYRKHVSNQVLNSPYLTNLLKKNNVW
FT                 LWDSHCQEAFDAIKRELCKGRMLYRPDMTLPFCITTDSSDYGVGVHLFQEK
FT                 VVNGEIIQQSIAFASRTLQKHERIYTITEKELLAIYWGFSKFKNYLLGHEV
FT                 VVYTDHKALIYLQECNLYHDRITRWAMFLQQFNYSIRHIKGKDNVVADCLS
FT                 RLPVCNKNEDFSREYEREFRLMYIKGVKDEGQIRKICKDIRRCQNDDQNWK
FT                 LVKSYLGKKGHEKVDKYYKVHNGILFRRMNIDRDMWKLCWPEPYIDILIRY
FT                 IHESFGHCGALKCIQKIXEIVYFYNISRRVRTLLAKCDRCQRVKVSNQNCK
FT                 GYMQNILPKEKLEIVAIDLYGSLPKSKGFCYIFVMVDVSLST"
XX
SQ   Sequence 6754 BP; 2494 A; 874 C; 1362 G; 2007 T; 17 other;
     taaatggtgt taggagctgg gattgtgaac aagaatatta aagactttct gttccaggtc        60
     gaagcagaaa acataatatc gacaagaact gtaaacatga agatctggca taaaaaacga       120
     agaacatctg tgagaaaatg aacagaaaac attgccaaca taccacggtg ttgctgcaag       180
     aaagctaaac aaaggtgaac ctgctaaaaa ataagactac agcactataa aatatcggcg       240
     gaggaacttc tcatctggac tccagaaaag ataagtaatc aaactttttt ttwtmtactt       300
     catttgtgtg gtgaagactg ttatattgtt tgcgatgtga catactgaaa gtagactagt       360
     tagccaaaat gtcaggcaca gggaaagacg acattgtaat aaacaagaaa atgctagtga       420
     cgtgagtagg gacgaaaata cgcaagaatt caaagtagat ccagttgcag aagaaactcg       480
     gagtgctaaa tgaaatttca gctaaaatag aaaaagtggc taggaatact tgtgaacttc       540
     agaaaatttg cgaaattggg agaatacgtg cgagctttca gaacatctag aaaaagtgga       600
     taggaatact tgcgaacttc agaaaattta ggaaaattgg aaagaaatac ttgcgaactk       660
     tctgaacaga taaaaggcat agatgtcaaa tttgacacaa aattgaaaca attaacagac       720
     gaaattgctg aatttaaagt atcagttgag tcaaagcatg tccagtttga tgctcgaatg       780
     ggcaacttag aatgtaaaat aggtgatgta gaaacmaaac tgtccaaagg tatcactgat       840
     aatactgaac atatagttgc tttagaaaga gttgtcaaaa ccgaaagtga tctgatgcaa       900
     cagcacaaag tagatgttga acaacaattt caggctcata gacaggaaac ccagtctaaa       960
     gttgatcatt tagatgtaaa aatmaccaat gtggaaaaag gagtactgaa atgtgtagaa      1020
     aaatgtgatc aaaatgtaat agatttaagt aggaaggtgt cacacataca ggatgatgtg      1080
     gtaaccaaaa tgttaaattg caatcctctt aattttggta gtgttcacat gaaatgttac      1140
     cctggtgatg gaaacatcca tcctaaagat ttcattaagw catgcactga taattttacc      1200
     tttgatatga cagataacac aaaaattaaa tttgttaaaa gatttcttga caaagatgct      1260
     ctctctgggc aaataaaatt gttgacccag acttatcata tgtagaattc gaaagaaagt      1320
     tcttttttga aaaattctgg tctagtaggg aacaagcttg catcaaaagt gcatttctta      1380
     atggacctat gtacaaagaa tctgatggga caatgaagga attttgtgaa aaacagctta      1440
     gaaaattagt gcacattgat aaaccattag atgatgtaac tataattgat gccttgcaaa      1500
     gaaaattacc ttggaaaatt cagaaaggat tagactatgc acctgacgaa tccattgact      1560
     tgtttctaaa ctttgtagat aaactagatc gtagagtaga aagggaaaaa gaattcaacc      1620
     aaaacaaaca gaatagacct agcaatagag ggtggaatma gcctaatgag agaaacaatt      1680
     atgatgacag aaatagaggt atgggagaag taatggtaat aataatgaca attacaggcc      1740
     acacaatgga aacaataaca gtcatgggtt taagggagaa ccgtagaata tcagaataga      1800
     cagtggggga atgataaacc acaaaactat aatggtaatg aaaacagaca aaatagacag      1860
     gaaaactaag agctgcccca gttggtgcct gtcagtcggt ggctaacagg tatggtaaaa      1920
     tcaggctaga cttttgggaa acaaagcaga ggagaacaat tttgcaatta tggtgatagg      1980
     aatagaggtc atgtagtgaa taatgttgtg tttgatgcaa aattttggaa atatgtaaat      2040
     gataataaca atgatgtgac aaataattgt gtaaccaatg aatgtgaaga aattgagcta      2100
     gatagtgaca ctattagtaa tttgtatgat aatgataaga atgttgaaga tagagacagt      2160
     aatttgtgtg atctagtaga attgtttgat gaagaaaggg attgtaacca aaatgactct      2220
     attgaattag acagtatcaa tgccaattgc atgagtgaca tagattccaa ctgcagtgac      2280
     tttgtctcag aaatcgagtt atcagatagc caagtgagga ggactgtatt ctttctgatg      2340
     tattacaaga actagatggt atgattcatg tggaattaaa agatgtagat agtgaggtct      2400
     ctgatgtgtc atgtgaaata ggaaatggag agaaaaagtg tgtaggtaag aaatctgaca      2460
     aagaaataat cagtattgaa gtaagagatg tactcaatga tgatgttgaa aatagtgatg      2520
     tagttaactg tgacaaggta atgcaaataa ttaatgagag aaaccaggta gtaattttga      2580
     tactagcatt gactatgata agtgttatga caaaccaaat acttgccatg tcattgaaat      2640
     aaaaccaatg atgactatta taatgataaa aaacaagtga tcatgttaac gatatgagtt      2700
     ttgataaagt aattgatgac ttattatatg aaaaggtatc tagtaatgaa aatgtaatat      2760
     ctggtagtcc atacatattt atcaaattag awaattggga aggagaatgc ttgctwgaca      2820
     caggtaktcc catttgtgga atatccaaac agcttaggaa caagatatgt aaaactaaag      2880
     actttgtaga ggtaccagtt gtaggagtaa aaattaaagg agcaacggga aatctagcaa      2940
     aactatcaag tcacaggtat tactgacctt tagtatagaa ggcatgaaat ttactcaagg      3000
     ttgtttagtt attcctgact taagtgagtc tgtacttttg ggagctgact ggttaaccaa      3060
     agttaatcta aattttgact ggaaaaacaa gaaaattatc ttaacagaac ctagtgacaa      3120
     aatttgcata caaactgatc tactaattag aaattgtgta gacactagta atttgattag      3180
     taaagtaagt tgtaaaaacc aattttctgt atatgatgag gaatatgttg aggggattct      3240
     gaattttatg actatgcaga tttagttaac aaaaaggtag aggaggctga tgaacttgat      3300
     gatagggaaa aagatcaact taaagatatt ctatggaagt atagtgatgt gtttagtgat      3360
     aaacctggaa aagtaaagaa ctatgaatgt aaaataaaaa tgaaaccaca caatcctttc      3420
     tttataaaac catatgggat tccattttca aaaagacagg ctgtagaaca aaagttacaa      3480
     aaaatggaag attggggaat tattcaaagg ggagaaagtc aatacaataa cccattagtc      3540
     attatttcca aaaagacagg aggggtaaga ttagtactgg attcgagaca attgaacaag      3600
     ttcatagaga ggaacagatc accctgaaaa tgtagatgag ttgccgcata aatttgacca      3660
     cttagaatac atgtctagtc ttgatttgac tgcagatttc atcaggttcc tttagaatac      3720
     aattccaggc aatatactgc atttcttatg gtgggagatg ttatgtatat tgtgttgtac      3780
     cattcgggtt aaatatttct gttgcagaat ttataagagc actagatcct gttttgggga      3840
     aaggattatc aaaaagctgt agtctatgtt gatgacatcc ttgtaactgg aaagttgaaa      3900
     aatttccagc acccaaaaca aagaagaact taagtcattt ttaggaatct gtgggtatta      3960
     taggaaacat gtaagcaatc aggtcctaaa ttcaccatat ctcacaaatt tgctaaagaa      4020
     aaacaatgtt tggttatggg atagtcactg tcaggaagct tttgatgcaa ttaaaaggga      4080
     actgtgtaaa ggaagaatgt tgtatagacc tgacatgacc cttccatttt gtattaccac      4140
     agacagcagt gattacgggg taggtgttca tttgtttcag gaaaaggtag taaatgggga      4200
     aattattcag caatctattg ccttcgctag cagaactttg caaaaacatg aaaggatata      4260
     taccattact gaaaaagaac tattggctat ttattgggga ttttctaaat tcaaaaatta      4320
     cctgttaggt catgaagtag ttgtatatac tgatcacaaa gctttaattt atctgcagga      4380
     atgtaaccta taccatgata ggataacaag gtgggccatg tttctacaac aatttaatta      4440
     ctccatcagg cacattaaag gaaaggataa tgttgtggca gactgtctgt ctcgtttacc      4500
     tgtttgcaac aagaatgaag attttagtag ggaatatgaa agagaattca gactaatgta      4560
     tatcaaaggt gtgaaagatg agggtcaaat acgaaaaatc tgtaaagata tcaggagatg      4620
     ccaaaatgat gaccaaaatt ggaaattagt aaaaagttat cttggtaaaa agggacatga      4680
     aaaagttgac aagtattaca aagttcataa tggtattctg tttaggagaa tgaacattga      4740
     tagggatatg tggaaattat gttggccaga accttatata gatatattaa tcaggtacat      4800
     acacgaaagc tttggtcatt gtggagcctt gaaatgtatt caaaagatac akgaaattgt      4860
     atacttttac aacatatcta gaagagtaag gactttatta gctaaatgtg atagatgtca      4920
     aagagtgaaa gtgtctaacc aaaattgtaa gggatacatg caaaacattt tacctaagga      4980
     aaaactagaa attgttgcca tagatttgta tgggagttta ccaaaatcta aaggtttttg      5040
     ttatatattt gtcatggttg atgtttctct aagtacataa aattgtatcc actgaaaaag      5100
     gctaccagtc atagtatcat taataagatt aaatctgatt attttaattg tatgggaaaa      5160
     cctaagtgtg tgttgtcaga caatggcagt caattcacat ctaattatgg aagtattttg      5220
     tcatgatgag aatatcaatc atattttaac atctgtgtat catccctcca gcaatcctgc      5280
     tgagaggtat atgagggaaa ttggcaggtt attccaatta ctgtagtaaa aatcactctg      5340
     attgggctaa ctatgttgat gattttgaat taatcatgaa taktctccaa cactcatcta      5400
     cagggttttc tccatatgaa attgtatcaa caaactacca gataatctta ttaatgaact      5460
     aataaatttt cctgcttgta aatgtttatc tccacaagaa cgagaagaaa ttgtaaaagt      5520
     agttatgaaa aaacaagctg atatcagaaa aaaagacatt acagcaaaga aagatgtcca      5580
     ccttgtgtgt cagtatgtgt tagtaaaaac taatgagaga tcgaaagctc taagtgtgat      5640
     taaagaagtt ttttgatatc tatattggtc cattcttgat aaagaaattc ctcacccaaa      5700
     tgcctataga cttgataccc caaatcagga aaattatttg gtctgagaaa tgtgactggt      5760
     taaaactgta cacataactt aagacaagat gatttgagat tcgttgtast gttttggtgt      5820
     catgctwtat gtatattttt katgtawtaa kgtaagtagt ctttactgta ctgtagtgtg      5880
     ggttttgatt tatcttgggg gagggggggt agattaacag aataaaatat ggaattttgc      5940
     cagttaatta aatgtagatc taggtaatca gaaccttttg tattgagaga tttgtactga      6000
     atggaatata tgtaaaaagc ttatctgtaa atatgtatat attgctatta tgttgatcaa      6060
     tgattaatct actatccgac ctaaaaaatt agcataatta tgattattgt gtaattactt      6120
     ttcatgctta ttgtcttgct tttaatataa atcttaggta acaatagtta aagtgatttg      6180
     gtgccttcag cacatttgtg gaactattca cttgtcgcaa tataaaatta ttggtaatct      6240
     ttaattattg cctgaaatga tatttaattt tgccgagaaa agaaagcttt aagtcattgc      6300
     cagaattaag ttaatttttg aaagataatt acaatgaaac attacaagta aaaaaaatct      6360
     gtaattttta tgatttcaat accattattt tatgtgcatg tgattcagtg ttgtgttcaa      6420
     atcaagggta ccaggggttg acattcgagt cattagactg gacatgtcaa caacttggtc      6480
     accattggtt tgactgaaca tttccttatt acaaaatatt gacacaattg gtgctatttc      6540
     aaatttaaat ttgtcaaaga aacagtgaat gtgatggtca agtcatgaat actacgattt      6600
     aattttgcta cattgataat ctgttttgtt ctctattttc catcttgtat taagaaattt      6660
     gcttaaatag tactgcccca tgttctttgt tgcaaacact ggtggatctt ttgtgtgtag      6720
     caagcaacac acagaagatc tgggggaggg ggga                                  6754
//
ID   Gypsy-47_LMi-LTR repbase;    DNA;    INV; 958 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-958
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 958 BP; 309 A; 170 C; 112 G; 364 T; 3 other;
     tgtaatgtaa caacatgagc ctctgtctac tgtagtatat gatacctctc tttactgaag        60
     cccaggatac ccttctttcc ttgtagtaaa gtttatatac cacctttccc tgtagtaaag       120
     tttacgatac cacctttatt catttctaca ttataacaac tacattgttt atgtcactaa       180
     gtatttacct cattttattc ccataaataa aatcccatta atttcgtagt aattaccctt       240
     ttatgcccat tactaaattc ctataatttc gtaatactta tttccttata ttcccattat       300
     taaacctcaa taatttcgta atactcattt acctttgttc ccattattaa accccagtaa       360
     tttcatagta tttctttttg cagtatttat ttctctcatt tcctttatta aaattagatt       420
     aatttcgtag tatttttggc ctgaccaaat ktcagcacag attgtaattt aaagctgttg       480
     ttacatctaa ttgtcattgt atctaattgt caatcattgc agttcattgt aaagcgaatt       540
     atttaacttc aactmaacaa taagaatcct cattattata ataagacaaa actatttaat       600
     catgtatttg ttattctagt tccttcacat tgaaaattac aaagatttgt tgtgtataaa       660
     agaatccatt catataatta cattgtgata attaagtaat acatcatatt gtcaatgact       720
     gttaataacg taataaacaa aagtatgcgc gggatttgca gstcattgta tctcagtatt       780
     cagtgttaat cagtatcatc tcagtgtcat cttgatgcta ttagaaataa aggaggaaca       840
     tagctggacg aagatgtatc atttaaaaca ccccttcaca aatttagcta acttcgagtt       900
     tattatgaga aatttataat taaatgtggc gatcacccag ttcaaatagg gatcgtca         958
//
ID   Gypsy-47_MSe-I repbase;    DNA;    INV; 4832 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4832
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 924-924 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4832 BP; 1579 A; 890 C; 999 G; 1364 T; 0 other;
     atggtgaccc ctgtgcagtg ccgaaaataa tataacaata aaaagtgttg cgcaaataaa        60
     ataacagtat ccagtcggag tgtgtgcatt atacgtgcta tatagaaaaa tggcggaaaa       120
     tgaacaaaaa gacgtaaagg gtgaggtaga tcaaattacc attacttcaa gaattgcaga       180
     attttgggag gatcaacctc gaacatggtt tatccatgtg gaatcggtcc ttttcagccg       240
     taagttatcc gacgaggcga aatatcacct agtaatcgca aaattaggta aaaatgtggt       300
     tcaggcagca acagacattt tactcaatcc gccggaagaa aataagtata atgcccttaa       360
     ggctagactt ttagccgtat acgaagagtc ggaaagtcgc cagctgcaaa agttaatagg       420
     agaaatggaa ctcggcgatc agaaaccgtc acaacttctt cgacggatga aagacctagc       480
     cagagacaaa atcaaggatg acacgttact tcttttatgg caaaatcatt tgccgacagc       540
     ggttcgagct gtgcttatag ttacggacag caaggatttg aatacgttgg cctcagtagc       600
     cgacaaagtg atggagaccg tcaaacccat caacgtcgga gaggtcagca catcggatac       660
     gacctcatta gcagcgcaaa tagccagaat caatgtccgg ctcgatgaga tgcagtcaag       720
     gccaccgaga caaagcagca ggttttcagc acgcaagact cgagagcgct acggtagaga       780
     ggcgcgatcc atttcccgcg ggcgtcgaaa tcctacacct cgtggtacac cagctcgtgc       840
     cgactggatg tgtttttatc actaccggtt caaggaacaa gcgcgtaagt gcgtgccgcc       900
     gtgtgcttgg gccaacaagc agcagaagca tacggaaaac tgagcgccgt gcagtcagcg       960
     gcggacgaca gctgcatcgg aacgcgtaat taccgcctta gtataagaga tagatgtagc      1020
     aacctaaatt ttttagtgga tactggcgcg aacatttctg ttttaccacg caatgtagtt      1080
     agtaagagta acctaagtaa aaataaatca gactatacgt tgtatgccgc taacggcacg      1140
     actatagaaa cctacggcac taaaacttta aatctagatt taggtttaag aagatcctta      1200
     cgttggactt ttgttatagc tgaggtaagc caacccattt taggtgccga ttttttaaaa      1260
     tattaccaat tattagttga tttaaattcc cgtaagctta ttgaccaatt aacgcaatta      1320
     aacgtgctag cttcaattgt aagttcgccc attagccaga ccattaaaac cgtagatata      1380
     agtcatccat tttacgattt gctggcgaaa tatccggata ttacccaacc cgcatcattt      1440
     aaagaatcac ctaaacattc agtgtaccat catattgaga cagtcggatc acccgtacat      1500
     tgccgagcga gaccgttgcc accgcatcga tacgctaaag ttaaagaaga atttaaaatc      1560
     atgcaggaga tggggatttg tagaccgtcg aaaagcgcgt gggcaagccc attacatgtc      1620
     gtggaaaaaa aagatggtaa tttacgtctt tgtggtgatt atagagcgct taacgcaatc      1680
     accaaaccgg atagataccc tattccgaga ttgtacgatt ttacctacat acttgcagat      1740
     aaaaaagttt tttctcgtat agacattaat agagcatatc attgtataat ggttgctcca      1800
     gaggacgtag aaaagaccgc aataatcaca ccttttggac ttttcgaatt cccacgcatg      1860
     agttttggtt tgtgcaacgc agcgcaatct tttcaacgct ttatgaatca ctctgttttg      1920
     catggtttag attttttgta tacgtttata gatgacatag taatagctag tgagagtttg      1980
     gaacaacaca aaatacattt aacagaagtt tttgaacgac ttagcaaatt cggtattact      2040
     attaatttaa agaaatgctc atttggtaaa actaaaattg attttcttgg atacgaagtt      2100
     tgcactgatg gtattcggcc acttaaagaa aaagtagatg caattaactc ttttcccaaa      2160
     cctgaaaccg tagaccaatt aaggcgattt ttaggaatgg ttaactttta tcggttacat      2220
     ttacctcacg cagtagagta tcaattagaa ttaaacaaat atttaaaaga ttccaaaaga      2280
     aggataaaag taagattatt tgggacgata aatcaaatga agcatttata caatgtaagt      2340
     taagtttgca aagtgcgcct ggtttatcgt atccgaaacc cgatatgcca cttgcactaa      2400
     tgacggatgc atcgagtagt tgtgtgggtg cagttttgca gcatcgcgaa ggcaatgtat      2460
     ggaagccgtt aggatatttt tctaagaaaa tgacacctgc acaagaaaaa tatagtacct      2520
     atgatagaga gcttttagct atatatctct ctattaagta tttccggaat atgattgaag      2580
     gacaaaaatt agtaatttat accgaccata aacctttgac ttttgccttt aaaaaaatag      2640
     gtagtagcaa cgagttaccg cgtagagtta ggcaattatt atttatcagt gagttttcta      2700
     ctgacattaa acacattcaa ggtgacaata atgtagtagc ggatgcatta tcacgggtcg      2760
     aatccatttc tgttcccatt gcattggatt acgctgacat tgctcgtgtt caaagaaacg      2820
     acgagcaact ggccaacctg cgtaagcaga ccggtaagtg gaatttgcta gagatagtat      2880
     taccgggaca tgacaccagc attgtttgtg atatgactac actaaagcct agaccatact      2940
     taccagaaca gtttaggaga ttagcttttc agtctgtaca taaccttagc catccaggca      3000
     ttcgtactac aggtaaatta attaaacaaa gatttttctg ggtcaacatg aataaggaca      3060
     taagtatatg ggcacgttct tgtaatgcat gtcagcgtgc aaaaatacat agacatgtta      3120
     aatcggaata ccgccaattt ccattggcag aacgtttcac acacatacat gttgacatag      3180
     tagggccatt gccgatttct ttgcacgatt acaggttttt agttacaatc gtagaccgag      3240
     ctacaggatg gccggaggct tttcccgtaa aagatattag cgcggaaacc gtatcgaaag      3300
     ctatttatga aggttggatt tcacgttttg gctgtccttt tcaacttact agcgaccagg      3360
     gcagacaatt tgaaagttcg cttttcaagg aactcatgaa atatttaggt atatgcaaaa      3420
     aacgtaccac accttaccat cctcaaagca atggtatgat agagaggtgg catagatcgc      3480
     ttaaagcagc tttgatggcc agattagact cgaagacttg ggttgaagaa ttacctacag      3540
     tgttattagg actccgagca gcaccgcgca ccgatactag tgtaagtgct gccgagttga      3600
     cttatggaca aaccctaagg ctacctggcg atttctatga caacaacaca gagatatcta      3660
     attattgcga atatgtaaac aacttacgtt cgttaatccg taatttaaaa ccgaaaccga      3720
     atacacataa ggcttgtcac acagtttttg tgtacccaga attaagcaat tgtagtcatg      3780
     tatacattcg taatgatggt gttaaaaaat cattacaacc accttacgat ggaccattta      3840
     gagtgctaga gagaaacgat aaagttttcg tagttcaact tccgaatcgc gtaattaacg      3900
     tatcaataga taggttaaaa ccagcttttg aggttgaagt taaaaaaaaa aattgcctag      3960
     atactaataa taaaaattat gtgaacaaag agaaggataa tattactagt agtagcgata      4020
     gtcaacagca taacgcgact agagtagcga agagcgataa aaaaacgctc agctacacta      4080
     cgcgtagcgg ccgaataagt aaaaagcccg tacgtttcaa tttgtgagct tgggtaagta      4140
     taaagtttcc acatcggcaa gtcgtacata tattttgtat tataattacg attaaacacc      4200
     cgtgcaatta tattacgcat tgaacaatta tataataatg ggtaaagctg tatcaaagga      4260
     agaaattgtt atcgcccaaa acggggcaac tgctaactta caagacacaa cttggaacaa      4320
     ttatttcagt tggtctatcg tcggattttt agttttgagc ataatcatgt atttcgtgat      4380
     caaacgctgt atgtcgaagg ctaggacctg gttgaatgat catgtacgaa gtatacaagt      4440
     acaagtattg gaatcggtag aggcaacaag agctagtttt cgaaaaggga gagaccccaa      4500
     ttcaagcaag gtttctacta aacttgatat tgtgtaaaag tgtcagtgtt ttctctcaca      4560
     gtggtgatac tgagatgatt cgttagcaat cgtacaagta aaattttaag tttatgaatg      4620
     ggttatacaa cccttatatt ttttttttat atacaaccaa tattttgatt ttttttgatt      4680
     tatgttttgc aactatatta acatttattg ctgtattcag tatgctattg ttattgtagg      4740
     tataatattg tactattgta ttatgtttaa ctatcggtat taaaatttgt cctattttta      4800
     cccccaaaat atttttaaaa gggggggagt gg                                    4832
//
ID   Gypsy-47_MSe-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-203
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 973-973 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 203 BP; 61 A; 33 C; 43 G; 66 T; 0 other;
     tgtaacggcc atattgcttt gtaagcgtaa tgtatacgga gtgtagtcgg tcgggagaga        60
     gtagtgtaac gtggagtcag gtactgtgta cacgcgtata aataattatg taaaatgtgt       120
     ttcctgtaat aaacttttat tcacatataa ttatattatt gtgggacact cacatactcc       180
     ctataaaagg ttaccccctt aca                                               203
//
ID   Gypsy-47_SiCu-I repbase;    DNA;    INV; 4492 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4492
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5068-5068 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..4490
FT                 /product="Gypsy-47_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MGPKKDPASSNQQRHQDDDSDDASPAXHDEILRTLTX
FT                 IVQSLAARAPPRXAASSAXTSSSSTTPGTTLPVLRSIPLPKLASPDQLTIS
FT                 SFRDWRQRWQDYXDAQQLSLHPLTAQQGTLRSALNEDWTILWSSGRLNITA
FT                 STTVKDAVDFLERYIRQRRNPLLDRQAFHRRDQEPGESVDRYYAALKTLDD
FT                 ACAHETEFRCAACDQSCTTTCTACSSAFALAEYQQQIRIRDRLICGLQDRE
FT                 MQRKVLAEQYSSVLTLDRVLAICIAMENSTAVGATLSSPSNKKHLEANAAP
FT                 AKSSYKKQQHNPSSGGSNTTTDKPQKKKSWDSDAPCSGCGKQPRHRRSECP
FT                 AKDKNCRNCGGVGHYDRVCRQAKGNADGQPISKSKDNAAKSSNTVVAAGVQ
FT                 QLLAVDTVINGKSHTIRWLPDTGAEPTLLPESEFLLLGKKVRDALDPVTVS
FT                 CVGANGIGLGPVGSLRATLQLNGRSVPVTIGVCKNLNAPLLSKDHCIALGL
FT                 LPEGWPHSVVQPLSVLSISPGDPVTCTSPPSTDNTKDRNSIITEFAKAFDD
FT                 SVLRPMVGPPMTIELVEGAIPSKRYRAYNVPFHWRDSVKSQLDSMVEKGVV
FT                 EPVPVGEAIDWCHPMVVVPKKGSSEPRITVDLTGLNKYVRRPAYPTKVPRQ
FT                 AVARIPPGMRFFTTLDARHGYWQVPLDDASKKLTTFLTPWGSYRFCRNVMG
FT                 LISAGDEHNRRGDAALLGIQNVEKVVEDVIVFDSDYQTHLKRVKQIISRCQ
FT                 EHGITLNAKKFTFAQPEVEWCGFLINSEGYTPAPHMFSALKNFPVPTNKTD
FT                 VRSFHGLTQQFEAFSHRLTELSAPIRSLLSSKAAFIWEEPHQRAFQEVIQE
FT                 LCSPRVLAQFQPNQPLRLETDAAQSKGLGYALYQQQSDGTWRILQMGSRYV
FT                 TPAESRYSATEVEMLAVVWAVRKCKLFLLGSPFELVVDHRPLVPIINSKLL
FT                 DEVENPRLLRFKEKLASYLVTAVWRPGAKHTVVDVFSRHPVADPDAEDIEE
FT                 NPDSDPAPFIAAAVHDPDDGTRIISDPLLLSIRAAAGQDSEYRRLREHINH
FT                 GVASKDDLEEDLRPYWKFLPQLSIRDDLIFFGCRLLIPKALRPELLKTLHA
FT                 SHQGRDRTFRRAQQSVFWPNLTNDIRNVVTSCRECAEYLPSQQKEPFLSDP
FT                 PPSYPFQEVATDLFSFAGYEYLVMVDRYSGWIQVAQCGTSPTSSTVIRHLK
FT                 KWMTEFGIPEKLVSDNGPQFSSQEFRNWCSSWHILHATSSPHYPQSNGLAE
FT                 SAVKSIKYLLGKSTTNGDLTSEGFQDGLMELRNTPRADGRSPAQLLFGAPT
FT                 RTKLPLHRGQFLAQWKSRSMECDQRASSLRERAKERYNANAKPLPSLTTGD
FT                 IVLVQDHRTNKWXLTAEVLEIVARGRSYLLRTESGRTLRRNRRFLRRIQPP
FT                 SETSQPPPASGNAPPPPRRSSRRRRQPQRYANFVGLVPSPNPQGG"
XX
SQ   Sequence 4492 BP; 1004 A; 1491 C; 1059 G; 927 T; 11 other;
     tggcgcagtc gactttggga taattaattt taattaatta ccgaaaaaag tggtagtttt        60
     tcgtgttttt tctccgtgtt ttttgttgat tgccgaatcc aacccaaata attatgggcc       120
     ccaaaaagga tccagcctcc tccaatcaac agcgacatca ggatgacgac tcmgatgacg       180
     cctcacccgc wamccacgat gagatcctgc ggaccctcac cwcaatagtg cagtcacttg       240
     cagcacgtgc accccctcgt gawgccgcct catcagcasc aacgtcatcg tcatccacca       300
     cccctggaac cacccttccg gttctgcgaa gcatcccgct tcctaaactg gcgtctccwg       360
     accagctwac catctcatcc ttccgkgatt ggcgtcaacg ctggcaggac tacascgacg       420
     ctcagcagct ctcccttcat ccactgaccg cccagcaagg gacccttcgg tcagccctaa       480
     atgaggattg gacaatcctg tggagttccg gtcgactcaa catcaccgcc tccaccaccg       540
     tcaaggatgc cgtcgacttc ctcgagcgct acatcaggca gcgcaggaat cctcttctcg       600
     acaggcaggc gtttcaccgt cgcgaccaag agcccggtga atccgttgac cgctactacg       660
     ccgccctgaa aacgctggac gacgcttgtg cccatgaaac agagttcagg tgcgcagcgt       720
     gcgaccagtc atgcacaacc acgtgcaccg cctgcagcag tgccttcgct ctggcggaat       780
     accagcagca aatcaggatc cgtgaccgct tgatttgtgg actgcaggac cgggagatgc       840
     agagaaaggt cctcgccgag cagtactcct ccgtcctcac ccttgaccgt gttcttgcga       900
     tttgtatcgc aatggaaaac tccaccgccg ttggagcaac gctctcctcc ccctccaaca       960
     aaaaacatct cgaagcaaac gctgcccctg cgaaatcctc ctacaaaaag cagcagcaca      1020
     accccagctc tggtggttcc aacaccacca ccgacaagcc acaaaagaaa aaatcctggg      1080
     attcggacgc cccttgttcc ggatgcggga agcagccgcg ccaccgtcgc tcggaatgtc      1140
     cagccaagga caagaactgc agaaattgtg gcggtgtcgg gcattacgac cgcgtctgtc      1200
     gtcaagcaaa aggaaacgca gacggtcaac ccatctctaa atccaaggat aacgcagcca      1260
     agtcatcaaa caccgttgta gccgccggag tacaacagtt actggctgtg gataccgtca      1320
     tcaacgggaa gtcccacacc attcgttggc tcccagacac cggggcggaa cccactctcc      1380
     tcccggaatc cgagttcctg ctcctaggaa agaaagttcg cgacgcactg gatcccgtta      1440
     cagtctcctg cgtcggcgca aatggcattg ggcttggccc cgtagggtcc ctccgtgcaa      1500
     ccctccaact caatggccgc tccgttcctg ttacaatcgg cgtttgcaag aatctcaacg      1560
     cccccctcct cagtaaggac cactgcattg cactggggct cctacccgaa ggatggcctc      1620
     actccgtcgt gcaacccctc agtgttcttt ccatctcacc tggagacccg gtcacctgca      1680
     catctccacc ctccaccgac aacaccaaag accgcaactc catcatcacg gagtttgcaa      1740
     aggccttcga tgacagtgtt ctccgtccaa tggttggtcc cccgatgacc attgaactcg      1800
     tcgaaggagc catcccgtcc aagcgctacc gcgcttacaa cgttccattt cactggaggg      1860
     attcagtgaa aagccagctc gactccatgg tggagaaagg tgttgtggaa cctgttccag      1920
     taggcgaggc catcgattgg tgccacccta tggtcgtcgt ccccaagaaa ggatcctcgg      1980
     agccccgtat caccgtagat ctgactggac tcaacaagta cgtgcgcagg ccagcctatc      2040
     cgaccaaggt gcctcgtcaa gcagtcgcac gtattcctcc gggcatgcgg ttcttcacaa      2100
     cgctagacgc acgccacggt tactggcagg tcccccttga cgacgccagc aaaaaactta      2160
     cgacgttcct caccccctgg ggcagctacc gcttctgccg caacgtgatg gggttgattt      2220
     ccgccggcga cgagcataat cgcaggggag acgcagccct actcggaatc caaaacgtcg      2280
     aaaaagtggt ggaggacgtc atcgtgtttg actccgacta ccagacccac ctcaaacgtg      2340
     tgaagcagat catttcccgc tgtcaggagc acgggatcac gctgaacgca aagaagttta      2400
     cttttgctca accggaagtg gaatggtgtg gcttcctcat caattcggaa ggctacactc      2460
     ccgcccctca catgttctct gctctgaaga actttccggt ccccaccaac aagacggatg      2520
     tccgctcatt tcatgggcta acgcagcagt tcgaggcctt ttcccatcgt ctgacggagc      2580
     tgtctgcccc catccggtct ctcctatctt ccaaggccgc cttcatttgg gaggagcctc      2640
     atcaacgcgc cttccaggag gtcatccagg aactttgcag cccccgagtc ttggcgcagt      2700
     tccaacccaa ccagcctctt cgccttgaaa cggacgccgc ccagtccaag ggattgggat      2760
     acgcattgta ccaacagcag tcagatggta cttggagaat cctgcagatg ggatccaggt      2820
     acgtgacccc cgccgagtca cggtacagcg ccaccgaagt ggaaatgttg gcagtcgttt      2880
     gggcagtccg gaagtgtaaa ctcttccttc tgggctcacc gtttgaacta gttgtggatc      2940
     atcgcccact agttcccatc atcaactcga agcttttgga cgaagtggag aaccctcgcc      3000
     tccttcgctt caaggaaaag ttggcgtcct acctcgtcac cgctgtttgg cgtccaggag      3060
     ccaagcacac cgttgtcgat gtcttctccc gccatcccgt cgccgatcca gacgcagaag      3120
     acatcgagga gaatccagac tccgatcccg caccattcat tgcagcagct gtgcacgacc      3180
     ctgacgatgg aacccgaatc atctcggacc ctttgctcct ctccatccgt gcagcagctg      3240
     gtcaagacag cgagtatcgt cgcctccgtg aacacatcaa tcacggtgtg gcctccaaag      3300
     acgacctaga agaggacctc cgcccgtatt ggaagttcct tccccagctc agcatccgcg      3360
     acgacctcat cttcttcggg tgtcgcctcc tcattccaaa ggcgttacgg ccagaactgc      3420
     tgaagacgct tcacgcctcc catcaaggtc gtgatcgtac gtttcgccga gcccagcagt      3480
     ccgttttctg gcccaatctc accaacgaca tccgtaatgt cgtcacgtca tgtcgggagt      3540
     gcgccgagta cctcccatcc cagcaaaagg agccattcct gtcggacccg cctccgtctt      3600
     acccattcca ggaagtggca acggatctct tctcctttgc tggctacgag tatcttgtca      3660
     tggtagacag atactcagga tggatccaag tggcccagtg tggaacctct cccacctcca      3720
     gcacggtcat ccgccacctc aagaagtgga tgaccgaatt tggaatcccc gagaagctcg      3780
     tctccgacaa cgggccccag ttctcgtccc aggaattccg aaactggtgc tcctcttggc      3840
     acatcctcca cgcaacatct tcaccgcact acccacaatc caatgggctc gctgaatccg      3900
     ccgtcaaatc cattaaatac ctcctgggga agtccaccac caacggcgac ctcacctccg      3960
     aaggcttcca ggatggattg atggagcttc ggaacactcc tcgggctgat ggacgcagtc      4020
     ccgctcagct cctctttggt gcacccactc gtaccaaact ccctctccac cgtggccagt      4080
     tccttgcgca gtggaaatct cgttccatgg agtgcgacca gcgtgcttca tcccttcgtg      4140
     aacgagccaa ggagcgttac aacgccaatg ccaagcctct tcccagtctc accaccggag      4200
     acatcgtcct ggtccaggat cataggacca acaaatggra tctcaccgct gaggtcctgg      4260
     aaatcgtcgc acgtggtagg agctacctcc tccgcaccga gtctgggagg acccttcgcc      4320
     gtaatcgccg tttcctccgc cgtattcagc caccgtcgga aacgtcccag cctcctccag      4380
     cttcagggaa tgctcctcct ccacctcgcc gctccagccg tcgccgtcgt caaccgcagc      4440
     gatacgccaa cttcgttgga ttggtcccaa gtcccaatcc ccagggaggg ca              4492
//
ID   Gypsy-47_SiCu-LTR repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-307
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5124-5124 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 307 BP; 84 A; 93 C; 49 G; 80 T; 1 other;
     tgwggtagat ctcatttgcc ccaaagcaaa gcgcatcttt cgagcaccat gctcgcctct        60
     cgtcagaagt cgtcagccaa tccggagctg acaacacagc caacgtgccc agacagcacg       120
     gcagcagacc accacgtcac ttgagcccaa gaccggctct cattctcatc ttactctccg       180
     tctctcgctc accacgagct cattctctta cttacaattt atcttattgt aattattctt       240
     ttaatgtgaa ataaactagt aaaaacgaaa cactgccgct taagaacctt catttcatca       300
     tagttca                                                                 307
//
ID   Gypsy-47_SpEx-I repbase;    DNA;    INV; 3996 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3996
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4115-4115 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..2728
FT                 /product="Gypsy-47_SpEx-I_1p"
FT                 /translation="MACNLSNIVFPGEFNPKIDKWCEYKERLLCSLDVLGV
FT                 DNDNLEKARSIFLSQCGKDTYSLIVSLLVPKRPTEVAFKDILGVLDQFYEP
FT                 ELNEILQAGKFHIRQQTDSESVQDFVAAIGLLGAKCNFVDLKRQLRDRLVL
FT                 GVRDQRLRRELLKTKNLSYETAVQLCLNHQAIVQDIYPDTKLCTKQTHLDV
FT                 TEAMDIDKISAAECRHCARHHKEGERCPFMKARCFYCKRLGHIASACERKS
FT                 TKKQHQVVDLAEEAETGNIEDMLGVYVCSESHTPPIKAELTINGAVVTMEV
FT                 DSGASRTIISAATYRRLWIKPPPLRSTNVKLVTYSREALQVLGATYVQVKL
FT                 GNKEAQCELFVVSGEGPSLLGRSWFKALDLQVIGICWTQAEANSDLVQQFP
FT                 ELFKDTLGYYKGPEVSLHVRADATPRFLKARPVPFPLRKQVEEQLTQMINE
FT                 GILTPVRYSKWATPLRIVKKDDGSLRICGDYRSTVNMAIDADTYPLPAATE
FT                 SFVKLSGGRIFSKLDLKQAYMQLKVDHDTAMLLTLNTPLGLMRMNRLAFGV
FT                 NAAPGIFQRVMSSALAGMDGVACLLDDIAVSGRTTEEHDTRLRAVLHKLNE
FT                 MGLRLKLDKCVFASNSINFLGHVIDAEGLHPSPNKVKEIKEKPAPTNKQTL
FT                 RAFLGLYNFYEKFLPDKATLLEPLYRLLETKKPWYWGQVEQDAFDKAKELL
FT                 SSDLTLVGYEVDRELLLICDSSDYGLGAVIAHVMDDGCEKPIMMASRTLQP
FT                 NERRYGQIDKEALAIMFGLKKFHEFLSGRPFCIVTDHKPLVSLFNPRKQIP
FT                 DQISPRMLRWSLKLAGYSYQIKYRAGKLIGNADALSRWTELETSEVPVKPL
FT                 REVLLLEEQPEGWNLDVSKLATETGRDQIIKAGLVSHTPWLAK"
FT   CDS           2661..3860
FT                 /product="Gypsy-47_SpEx-I_2p"
FT                 /translation="PRKLGGIRLLKRVLFHILHGWPNKVRDTTLHPYWTRR
FT                 EALSQNKGCLLWCNRVIIPASLQQEVLRLLHAPHAGVVQTKAYARGYVWWP
FT                 GMDTQIENVVGSCEACQAVRNNPPRDPQAWIVTEKPWSRVHVDFAGPFQGK
FT                 TFFVMIDSYSKWFEAEIVSSMSSEAVITVCRKIFASQGIPDILVSDNGRAF
FT                 TSAEFNIFLKNNGVKHLYSPPYHPASNGQIERAIQTFKNKLKKMSLNHLPW
FT                 TEKLPRALYALRTVPNSSTNKTPAEMLNGRKYRTAVSRLHPDNTPSPQEQQ
FT                 LEDRSQQQAIRRFTVDQPVMIRNYGPGEKWNRATVELVEGPSSYMVRTEDG
FT                 ELHRRHADQIIARTLPQATNRQVLAEHARSSSSSPEPPIEIPPPELWPDII
FT                 GIPKTN"
XX
SQ   Sequence 3996 BP; 1227 A; 725 C; 958 G; 1086 T; 0 other;
     ttggcgacga gtaaaaaaat aattaattat cagttggaaa atggcgtgta atttatcaaa        60
     tattgtgttt cccggagagt ttaaccctaa aattgataaa tggtgtgaat ataaggaaag       120
     actgttgtgc tcattggatg tgcttggtgt ggacaatgac aaccttgaaa aagcgcgatc       180
     tatatttcta tctcagtgtg gaaaagacac ttattcactg atagtgtcac ttttagtgcc       240
     aaaacgacca actgaggtcg catttaaaga cattcttggt gtgttagacc agttttatga       300
     accagaattg aatgaaatac ttcaagccgg gaaatttcac atacgtcaac aaactgatag       360
     tgaaagcgtg caagactttg tggcggccat tggtttattg ggtgctaagt gcaattttgt       420
     tgacctgaag agacagttac gagaccgttt agtgttgggt gtgcgcgacc agcgcttgcg       480
     tcgggagctg ttaaaaacaa aaaatttgtc atatgaaaca gcagtacagc tgtgccttaa       540
     ccatcaggcg attgtacaag atatataccc ggacactaag ctctgtacga agcaaactca       600
     tttggatgtt accgaggcta tggatattga taagattagt gctgcggagt gtcgacattg       660
     tgcacgacat cacaaagaag gcgaacgatg cccatttatg aaggctaggt gtttctattg       720
     caaacgcctg gggcatatcg cgtcggcttg tgagaggaag agtacgaaga agcagcacca       780
     ggtggtagat ctcgcagaag aagctgagac aggaaatatc gaagatatgc tgggtgtcta       840
     cgtctgttca gaaagtcaca cacctccaat aaaggcagaa ttaacaatta atggtgctgt       900
     cgttacaatg gaggttgact ctggagcatc tcgaacaatt atttcggcag ctacgtatcg       960
     gcgtttgtgg attaaacccc cacctctgcg atctacgaat gttaaattag taacatattc      1020
     tcgtgaagcc ttgcaggtgc ttggcgccac atatgttcaa gtcaagttgg gcaacaagga      1080
     ggctcaatgc gagttatttg tggtgtcagg ggaaggaccc agccttcttg gtcgaagttg      1140
     gtttaaagct ttggacctgc aagtaattgg aatttgttgg acacaagctg aagccaatag      1200
     tgatttggtg cagcagtttc ctgaattatt taaggatact ttaggatact acaaagggcc      1260
     ggaggtgtcc ctacatgtac gagcagatgc tacaccacgt ttcttaaagg ctcgtccggt      1320
     accgttccct ttaagaaaac aggtagaaga gcaattgact cagatgatta atgagggaat      1380
     attaacacct gtaagatatt ccaaatgggc tacaccacta aggatagtga agaaagacga      1440
     tggttccctt cggatttgtg gggattatcg atctacagta aatatggcga ttgatgccga      1500
     tacctacccc ttgcctgcag ccacagaaag ttttgtaaag cttagtgggg ggcgaatatt      1560
     cagtaaatta gatttaaaac aagcctatat gcaattgaag gtcgatcatg atacagctat      1620
     gttgttgaca ttaaacacgc ctttagggct catgagaatg aacagactag cttttggagt      1680
     aaatgcggca ccgggcattt ttcaaagagt aatgtcatca gcattagcag gaatggatgg      1740
     cgttgcatgt ttgctggacg atattgccgt ctctggaagg acaacagaag aacatgacac      1800
     aaggttacgg gcagttctac acaaattaaa tgaaatgggt cttagactga aattagataa      1860
     atgcgtcttt gcttcaaaca gtattaattt cttgggacat gtgatagatg ccgagggact      1920
     acatccatcc cccaataaag tcaaagaaat taaagaaaaa ccagccccaa caaataagca      1980
     gactttgcgt gcattcttag gattgtataa cttttatgaa aagtttttac ctgataaagc      2040
     aaccttgttg gaacctttgt accgactttt ggagactaaa aagccatggt attggggcca      2100
     agtagaacaa gacgcatttg ataaggcaaa agagttattg tcttctgatt tgacattggt      2160
     cggctacgaa gtagaccgag agttattact tatttgtgat tcatctgact atggactagg      2220
     agcggtgata gcacatgtga tggatgacgg atgtgaaaaa cctatcatga tggcttcgcg      2280
     aactttacaa cctaatgaaa gaagatatgg acaaatagat aaggaggcct tggcgattat      2340
     gtttggatta aaaaagtttc atgagttcct ttcaggtcgt ccattttgta ttgtgactga      2400
     tcacaaacct ttggtgagcc tttttaaccc tagaaaacaa attcctgatc aaatttctcc      2460
     caggatgtta cgttggtctc tgaaactagc tggttacagc taccagatta agtatagagc      2520
     tggaaaattg attggtaatg cagatgcact tagtaggtgg actgagctcg agacttctga      2580
     ggtaccagtg aaaccactca gagaggtact gttattggag gaacaacccg aaggctggaa      2640
     cttagatgtg tctaagttag ccacggaaac tgggagggat cagattatta aagcgggtct      2700
     tgtttcacat actccatggc tggccaaata aagtccgaga caccactctg cacccatact      2760
     ggacgcgccg tgaggctctt tcacagaata aaggatgttt attgtggtgc aacagagtca      2820
     tcattcctgc tagtttacaa caggaagttc ttcgattatt gcatgcaccg catgctggtg      2880
     tcgtccagac aaaggcttat gcgagagggt atgtgtggtg gccaggaatg gacacgcaaa      2940
     ttgagaatgt ggtgggaagc tgtgaggcat gccaagctgt gagaaataat cctccaagag      3000
     acccacaagc gtggattgtt actgaaaagc catggagtcg agtacatgtg gattttgcag      3060
     gcccttttca gggtaaaact ttttttgtta tgattgacag ttacagtaag tggtttgagg      3120
     cagagatcgt ttcttctatg tctagcgagg cagtgataac agtgtgtagg aagatatttg      3180
     catcacaagg tataccggat attcttgtgt cagataatgg cagggcattt acttcagcag      3240
     aatttaatat attcttgaag aataatggcg taaaacattt gtactcgccg ccataccacc      3300
     ctgcgtcgaa tggacagatt gaaagagcca tacaaacttt taaaaacaaa ttaaagaaaa      3360
     tgtctctaaa ccacctacca tggacggaaa agcttccgag agccctgtat gcgctacgaa      3420
     cagtgcctaa tagttcgact aataaaacac cggcagaaat gttgaacggt cgtaaatata      3480
     gaacagctgt atcaagattg catcctgata atacaccaag tccacaggaa cagcagttag      3540
     aggatagatc tcaacagcag gctataagga gatttacagt cgaccagcca gttatgattc      3600
     gtaactatgg gccaggggag aagtggaata gagccactgt agaattggtg gaagggccaa      3660
     gctcatacat ggtgaggaca gaggatggtg aactacatag acgtcacgcg gatcaaatta      3720
     ttgctcgtac gttaccgcaa gcaacaaata gacaagtact tgcagaacac gcaaggtcta      3780
     gttccagttc accagagcca ccaatagaga tacctccccc tgaattatgg ccagatatca      3840
     ttggtatacc aaagacgaac tgatttgact ttaaagattg atttatgttt ttttagtagt      3900
     tatatatctg tcatatttga tttattagta taagttacta tttgatttgt taattattaa      3960
     cgacagttgt ttcttatcga ttatgaggga aagata                                3996
//
ID   Gypsy-47_SpEx-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-157
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4176-4176 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 157 BP; 49 A; 16 C; 24 G; 68 T; 0 other;
     tgttgaatat tgattgtcat ctaattaatt ataacaatag tatcgagggt acttaaatat        60
     tatttacatt gattctgtca ttgcgattat tatacttgtg agggtattaa taaataaata       120
     gttttgatgc ttcaatctcg aactgttgta ttcttta                                157
//
ID   Gypsy-47_TrVa-I repbase;    DNA;    INV; 4028 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4028
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 292-292 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..4027
FT                 /product="Gypsy-47_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDFNKPDPLNLTSGNVTLNFTLFKEEALNYLTATETD
FT                 TKTRTVQVARLKNLLGPDARKAYAATNPFTALESIESIFDAIEEQCLPKKN
FT                 ETMAMYTFQSRKQFSAEPFERFYTDLRTLIKPCDFQSLESKILKSQIILGI
FT                 SSLSLRERLLREDLTLEKVVSLCKAAEASEHNLQVLNSNSSCLREDVHATT
FT                 TAKYTPSFPPSPSRSSKPNPPTKNQFRQPNKNKCFYCGFVHYPNQQCPAIG
FT                 ATCSFCGVANHFATVCRKRLKPAPKSSDELRAECANMVELNTEDTVDSLNF
FT                 SIDTVYSKYHDTNDQWFTNLFVNDQSITFKLDSGASANILSHHAAKKCGLQ
FT                 KICPTNVKLITYGGHELTPLGTVQATIRTQRSSITDTFIVLSLDCTPILGL
FT                 PTCKKLNLIKKCDEICNNPPGTFRPPSKEEFLETNADVFNGLGCFPGLTTF
FT                 KVKEGSEPKINPPRRVPLQIKDRLKQSLDTLEKNGIIEKVEQPTGWVSNLV
FT                 VIEKPNKTLRICIDPTELNKVIIRDYYEIPKFEEIMTSLSKMKFYCVFDLK
FT                 DGYYHLKLDAATSDLCTVSTPFGCYKFLRAPFGITSIPEIFQKKTSQYFGD
FT                 IPGVEVYFDDILSSGQTEEDLFRVVQMVLQRAREYGVKFNPTKLQYFAREV
FT                 NFFGNVICEGSCKPNPDRVKAIETLKDPCNKKELQQALGMVNYLSKFVPHL
FT                 SEKLQPFRTLLKLQDNNWLWTDQHSANFQSLKDIISKAATLTLFDPTKDVS
FT                 VQCDASQNALGSCLMQDGNPIYYASRCLTETEQNYAQIEKELLSVCFAMEK
FT                 FHNLIYGLKISVFNDHKPLVYILNKPFDKIKNNRLRRLRLKLLPYDLTLHY
FT                 VPGPKLVIADFLSRNCSLKSNHDTAYLTDVVHTIETLSLSPLKEVEYKNAT
FT                 AEDTTLSKLSEWYKLGWPKKNTFSGDLHTYFALKNNITVSNGLVYMDNRLI
FT                 VPTALRIPLLHLLHETHLSFVKTLPTAKQNFYWPKLSSELYNFIATCSTCN
FT                 KYSRTQIRHPLLSHEIPAVPFAKIGLDLAKENGSFYLILMDYYSRWLEIEP
FT                 LSNPNSAQIIEKLKRIFSAFGIPQKIVCDNSPFNSQEFHDFAHAWNIELIF
FT                 SSPYHPRSNGLAEKAVGIAKNMIKKSRDTKVELHLYLLNYRNAIIANTGFT
FT                 PSQLLMNRQLRTKLPVQSSNLSPNQGINHAVAHQKMLDNQQSQKSHYDKSA
FT                 RTEVLFWPGERILLQNPKTKLWENAKIVKKLPEPRSYLVETQFGFYRRNSS
FT                 LLRKTPSFEIEDTPAPTTEAAGTANEPEPLRRSSRIRRVPERLNYSKKGG"
XX
SQ   Sequence 4028 BP; 1288 A; 941 C; 728 G; 1071 T; 0 other;
     tggcgctgcg gacaatggaa atacaacaaa tattctggta acttgacagt tcaccaccag        60
     ccttatcaca agcaaacatt cttttaattt catcatggat ttcaataagc ccgatccatt       120
     aaacctcaca tctggtaatg taaccctcaa ctttactctt tttaaagagg aagcgttaaa       180
     ttatttaact gccacggaaa ctgatactaa aaccagaaca gtgcaagttg cgcggctcaa       240
     aaatctattg ggccccgatg cacgcaaggc ctacgccgca accaatccct tcactgcctt       300
     agagtcaatc gagtcaattt tcgatgctat agaggaacag tgcctgccaa aaaaaaatga       360
     gaccatggct atgtatacct ttcaatcgcg aaagcaattt tcagcagagc cttttgaacg       420
     tttctacact gatttgcgga ctctcataaa accttgcgac tttcaatccc tcgagtcaaa       480
     aattctgaag tctcaaatta tcctcggcat ctcttccctg tctctacgag aacgcttact       540
     ccgcgaggat ttgaccttag aaaaagtagt ctcactatgc aaagcagctg aagcatccga       600
     acacaaccta caggtcctta actccaactc gtcctgcctc cgagaagacg ttcatgcaac       660
     cactaccgct aagtataccc cttcctttcc accctctcct tctcgtagtt ccaaaccaaa       720
     cccacccacc aaaaatcagt tcagacaacc aaacaaaaac aaatgtttct attgtggatt       780
     tgtccactat cctaatcagc aatgtccggc tattggagcc acctgcagtt tttgcggtgt       840
     tgccaatcat ttcgcaaccg tatgcagaaa acggctcaaa ccagccccta aaagctctga       900
     cgaactgcgt gccgaatgcg ctaatatggt ggaacttaac actgaagata cggtagactc       960
     ccttaatttt agcattgata cagtgtatag taagtatcac gacacaaatg atcaatggtt      1020
     tacaaatctc ttcgttaatg atcagtcgat cactttcaag cttgacagtg gtgcaagcgc      1080
     caatattctg tcacaccatg cagcgaaaaa gtgtgggctc cagaaaattt gtccgactaa      1140
     cgtaaaattg atcacgtacg gtggccatga attgactcct ctgggtactg ttcaggcaac      1200
     tattcgcacc caacgctcgt caataactga tactttcatt gtcctttcgt tggactgcac      1260
     ccctattctg ggccttccta cgtgtaaaaa gcttaactta attaaaaaat gcgacgaaat      1320
     atgtaataat ccaccaggga cttttagacc gcctagcaaa gaagaatttt tagagactaa      1380
     cgcagatgtt ttcaacgggt tagggtgctt tcctggcctt acaactttca aggttaagga      1440
     aggatctgag cctaaaatca atccaccacg cagggtacca ttacaaataa aggaccgact      1500
     aaagcaatca ttagataccc tcgaaaaaaa tggaatcatt gaaaaagtcg aacaaccaac      1560
     cggctgggtc agcaacttgg tcgttatcga aaaacctaat aaaactcttc gaatctgcat      1620
     agacccaaca gagttgaata aagtaatcat tcgtgactat tatgaaatcc caaaatttga      1680
     ggaaataatg acatccctgt ctaaaatgaa attttattgc gtatttgacc tcaaagatgg      1740
     ttactatcat ttaaagttag acgctgccac aagtgattta tgtaccgtta gcaccccctt      1800
     tggatgttat aagtttttac gcgccccttt cggaatcaca tccattcctg agatctttca      1860
     aaagaaaacc agccaatact tcggtgacat cccaggggtg gaagtctatt ttgatgacat      1920
     tttgtcttca ggtcaaactg aagaagacct ttttcgagtg gttcaaatgg ttctccaaag      1980
     ggctagagaa tacggtgtta aatttaaccc tactaaacta cagtactttg cccgtgaggt      2040
     aaactttttt ggtaatgtca tttgtgaggg ctcttgtaaa ccaaatccag atcgtgtaaa      2100
     agcaattgaa actttaaagg atccctgcaa taaaaaggag ttgcaacaag cgttgggaat      2160
     ggttaattat ttgtcaaaat ttgtgcctca tttatccgaa aaattgcaac cctttcgaac      2220
     cttattaaaa ttacaagata ataattggct ttggactgac cagcactcag ctaattttca      2280
     atccttgaaa gatataatca gcaaagcggc tactttaact ttatttgacc ctacaaaaga      2340
     tgtatccgtt caatgtgatg cgtcccaaaa tgccctcggc agttgtctca tgcaagatgg      2400
     taaccccatc tattacgcgt caaggtgtct caccgaaacg gaacaaaatt acgctcaaat      2460
     cgagaaagag ctcctctcag tctgctttgc catggaaaaa ttccataatt tgatctacgg      2520
     actcaagatt tcggttttta acgatcataa accattagtt tacatattga acaaaccgtt      2580
     tgacaaaatc aagaataatc ggttacgcag gttgcgtctt aaattactcc cttatgatct      2640
     gacgttacat tacgtccccg gtccgaaatt agtcattgcc gattttcttt cccgcaattg      2700
     ctccttaaag agtaatcacg atactgccta tttgacggat gttgtacaca caatagagac      2760
     cttgagtttg tcgccgctta aggaagtgga atataagaac gcaacggccg aggatacaac      2820
     gctatctaaa ttaagcgaat ggtataaatt aggctggcct aagaaaaata ctttttcagg      2880
     agaccttcac acttatttcg cgcttaaaaa caacataact gtttcaaatg gcttggttta      2940
     catggacaat cgtctaatag tgcccacagc gttgcgcatc cctctcttgc acctccttca      3000
     tgaaacccat ctaagttttg ttaaaacctt gcctacggcg aaacaaaatt tctattggcc      3060
     taagttatca tctgagttgt acaattttat tgcaacttgt tcgacctgca ataagtacag      3120
     tcgaacccaa attaggcatc ccttattaag tcacgaaatt cccgctgtcc cattcgcgaa      3180
     aattgggcta gatctagcaa aagaaaacgg ttccttttat ctaattctca tggattacta      3240
     ctctagatgg cttgaaattg aaccgctgtc aaatccaaat tcggctcaaa ttattgaaaa      3300
     actgaaaaga atcttttccg ccttcggaat acctcaaaaa attgtatgtg ataattcccc      3360
     atttaatagt caagaatttc acgatttcgc ccacgcatgg aacattgaac tcatattttc      3420
     aagtccatac cacccaagat ctaacggatt agcagaaaag gcagtcggaa tagcaaaaaa      3480
     catgattaaa aaatccagag acactaaagt agagttacac ctctatctct taaactatcg      3540
     aaatgcgatc atagcgaaca ctgggtttac accaagtcaa ctactaatga accggcaact      3600
     acgaaccaaa cttccagtgc aatcgagcaa tctcagccca aatcagggga tcaatcatgc      3660
     agtcgcacat caaaaaatgc tcgataacca gcaatcacaa aaatcgcatt atgataagag      3720
     tgcgagaacc gaagtgctgt tttggcctgg tgagcggata ctcctgcaaa accccaagac      3780
     aaaactatgg gaaaatgcga aaatcgtcaa gaaattacca gagccccgat cctacttggt      3840
     tgaaacgcaa tttggtttct acaggcgaaa ctcatccctt ttaagaaaaa ctccgagctt      3900
     cgaaatagaa gacaccccag caccaaccac agaggctgcc ggtacagcga atgaaccaga      3960
     accgcttaga agatctagca gaatcaggag ggtgccggag cgcctcaatt attccaagaa      4020
     agggggga                                                               4028
//
ID   Gypsy-47_TrVa-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-47_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-141
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 351-351 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 141 BP; 49 A; 27 C; 15 G; 50 T; 0 other;
     tgtaaataga attggatctg ccacgatcag ctgatacaat tcatattatt tttcataacc        60
     tataaatgat catcatcgat tgttatcatg ttctaataaa ctccattcat atctgacaca       120
     atttgttata cctacgaaac a                                                 141
//
ID   Gypsy-480_AA-I repbase;    DNA;    INV; 5070 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-480_;
KW   Gypsy-480_AA-I; Gypsy-480_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5070
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5070
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3044-3044 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5070 BP; 1568 A; 919 C; 1122 G; 1460 T; 1 other;
     gtgtcgacga ggataaaacg gtattgtgac tctctttgaa agtgatacag tgcctagtgg        60
     tatcttttca cagcatctcg ttgattgtga gtaacgaaca gataggcata gtgttggata       120
     ctctatgtgt attatttgca atagagcaca ctttagttgg ctttcgcgaa tcgatctcgt       180
     tggttgtgcg cgccggtact aaggtcgatc acgtggtagt tgcggttgtt agtagtgcta       240
     aaatctgatt ctcgtaaggt ggtgatcacc ttgccggaga taagtggaag atttcgaaat       300
     tgaaatttgg gaaagaaatc gtgttaggtt gttgtattgt gccggtcgat ttgcgacgcc       360
     gtccgccatc tcgcagtgag ctacgattgc gcttatgtag cgtcgtttgt gaggcaaaaa       420
     agtgcctgta ggaaatctat tgatcgaaag tgcatggtgt atagatttga tatttttgag       480
     cagtgatata aaaataaatt gtgtgggaga gaagatctac agcagtaatt tagtaagcat       540
     tgtgagtccc aagtggagac ccgaattgac ggctagttgt ggtactccgt atacgatcct       600
     gacgttgctc caccgcccga ccaggccatc caccacgcca cccgcccgtc gcccaacccc       660
     gccacccgcc tcgccgctcg ccacgacagc ccaatagtag cttggaaagc tcgttgcaga       720
     ataaaaaggt acgtggattt cattttcttt gttctatcgt ctattgagta gtgatttgac       780
     ctctgtgcac tctgtgattg tattatcagg tgcagtagca atggcgttaa taggaaccgt       840
     tgatccgtat gtgccaggct cgtcttttac aaattatgtg gaaatggttg agcatttttt       900
     ctcatctaac aatattgatc caaatcgtag aaaagatatt ttcatcacgc ttgccggttt       960
     ttctgtattc gaagagataa agcttttata ccctgccaca gacctaaaaa ccttgtcata      1020
     cgaagacatt accaaaaagt tgaaagagag gtacgacaaa atcgattcta ccattgttct      1080
     ccgctacaaa tttagatgta gaaagcagag tccatcggaa acgggtgaaa attttgtgct      1140
     tgcggttaaa ttgatggctg aatcttgcga attcggcgcc catcgcgatg aggctatccg      1200
     tgatcagttg atatttggag tatacgaccg cgagcttcaa aagcggcttc taaatgaaga      1260
     gaatttaact tctaaaactg ctgaacgatt aattaaaaat agtgagattg ccgtttctca      1320
     agcgcgtgct attaattctg acgtaccagt aaattcggta aaacatcggt taggtcaaaa      1380
     ggacagccgt agtgatagga accttgatag atttcaaaat cgcggcagag aacgcagtag      1440
     aagtcgcgat tatcgtggag ggcgtaaaat gtatcgagga aggtcacgat ctggtgatag      1500
     gtcatccagc cgcggaagat actgccaaat tttacttgcc atttttgtaa aatgaaaggg      1560
     cacatacaga aaaactgcta ccgttataaa aacagccaga aaaatgcggt caagtttgta      1620
     gaggacagcg ccaagccagc agaacgagtt cacgactatt tcaagcgact gaaaatggat      1680
     tatagcggcg aaagtgacga ttcaggtgaa tacccttgcc taatggtggc gtccatcaat      1740
     aatgttagtg agccttgtct ccttgaagcc aaaattgaag gtaaaagggt tccaatggag      1800
     gtcgacagcg gttcggccgt atccgtaata agtaaagttg aatttatgag aaatcttagc      1860
     catgtcccat taagaacttg taaaaaaaag ttagtggtga tcaacggatc aaatcttaac      1920
     gttttcggta aagcttatgt gagagtatct ttaaatgcga aaaccgttcc agcggaactc      1980
     ataattttgg atggcgccca taattttatt ccattgattg gcagggattg gttggatgtc      2040
     ttttgtactg gatggagaag taatttttcc attggtttgt ctgttaataa agctgttgtt      2100
     caagataaca aagacacaat tgtaagtcag ataaaagaca aatattctaa cgttttcaag      2160
     cgagattttt caaagcctat tgttggtttc gaagcggatt tggtgcttcg agaggacagg      2220
     ccgattttta gaaaagccta cgatgtaccg taccgtttgc gcgaaaaagt actaaatcac      2280
     ttggatatgc tagaaaatga tggcattatt acaccagtga agacgagttt atgggcttcc      2340
     ccagtggtag tagttataaa aaaagataat gacatacgat tagtcataga ctgtaaagtg      2400
     tctatcaata aagtactaat tccaaacaca taccctctgc ctaccgctca ggatcttttc      2460
     gcttccttag cggggtgcaa ggtgtattgt gcgcttgatt taactactgc ttacactcag      2520
     cttaaccttt ccgaaaaatc aagaaaattt gtaataatta acacgattaa gggactatat      2580
     tcgtataata gacttccaca gggggcttca tccagtgctg caattttcca gcagatcatg      2640
     gaaacaatac taaaaggact tgactttgtt tattgctatc ttgacgatgt gttgattgct      2700
     ggaaaagatt tcgaggattg ttataaaaag cttctaattg tgttggatcg tttgaacaag      2760
     gtgaacatta aagtgaatta caaaaagtgt aaatttttcg tagaacaatt gccttacctg      2820
     ggccatattc tcacagagca agggcttttg ccaaaccctg aaaaagttca aacaattcag      2880
     gaagctaagt caccaaccaa tacaactgag ttaaaagctt ttctcggatt aattaatttt      2940
     tatggcaaat ttctcccaaa tctgtcatca gtcttaagtc cattgtatag gttgttgaaa      3000
     aaagacataa ggttcgaatg gaatgtgtca tgtaatgaag ctttcaatga aagcaagaaa      3060
     atgttactca atgcggacgt tttaaccctt tatgatccca aaaaaccaat tgtggttagt      3120
     agtgatgcat cgtcttatgg acttggagga gtgatttctc atgtggtgaa tggagaagag      3180
     aagcctataa gcttcacatc attttctctc aataatgctc aaaagtcgta tcccatactt      3240
     cacctagaag cgttggctgt agtctcgaca attaaaaagt tccataaatt tttatatggg      3300
     cagaagttca cggtttttac ggaccacaaa ccattaattg gaatccttgg gaaacctggg      3360
     cgaaattcaa tttttgtgac tagactgcag cgttatatta tggaattgtc catttatgat      3420
     tatgaaatca tttatcgacc gtcacaaaat atgggcaacg cagacttctg ttcgcgattt      3480
     ccattaaagg ttgaggtccc aggtaactat gagaaatatt ctatcaaaag cctgaacttt      3540
     tctgaggagt ttccattgaa tttctcgacg atagcgcaag agactgtgaa cgatttattt      3600
     ttgcaacaaa taatgttttt cataaaaaat ggatggccag aacgcattga taaatgcttt      3660
     agagacatat attctcaaca gcaacattta gaggaggtta atggatgcct gctcttccag      3720
     gatcgtgtga tcataccggg atctttgcaa ggaaaacttt tgaaacttct tcacgcaaac      3780
     cacgatggaa tagtgaaaat gaaacagcag gctagacgac atgtgtattg gtttgggata      3840
     aataacgatg tagaatctta tgtgaaacga tgtgacattt gtatgaaaat ggcagtcgtt      3900
     cccaaagaca aatttcttac tgaatggacc gcgacaaata aagcttttag cagaattcat      3960
     gccggttttt tmtattttga aaaacaaact ttcttgttaa tcgtcgataa tcattctaaa      4020
     tggttagaaa ctgactggac gagactcgcg acagacggtc ccggaaaggt tattaagaaa      4080
     tttacatacc ttgtttgcaa ggtttggttt acccaaactt aatcgtaact gataatggcc      4140
     cgccagtcaa ttcaagacat tttgtaaatt tttttgagag aaacgggata caggttttaa      4200
     aaagcccacc ttatcatccg caaagtaatg gtcagacaga acgtttggta agagtgacaa      4260
     aggaagtctt gaaaaagttt ctattagata gagagtttag acatctggat ttacaggacc      4320
     gattgaatta ttttgtattc aattaccgta atagttgcct aacgtctacg ggggaatatc      4380
     cttctgaaaa ggtattaggg tacaagccta ggacattatt agacctcgtg aatcctaaaa      4440
     atggtttcaa gcatcagtct acagaaactt cacactctaa tgttttaatg cccatagagc      4500
     ctctagagca tgaaaacctg gacccttttg cgaagttggc agttggggac aaggtatatt      4560
     ataggaattt tagagataat gagtatcagc gatggattga ggcaaaatac attaaaagaa      4620
     tttctaaaaa tatgtttcag atcgcgatcg gatctcaccc agtttcggcc cacatggggc      4680
     aactgagagt gcctgtgagg actgaacggc gcagagtggc gcttcagtcg gtaccaaggc      4740
     gtggaacgaa gagaggcaga aataactccg aggaggatac ggatcctccg atgctagact      4800
     cttccttcga agctcctcca ccgtctagaa gcgaagtcca ccccgaagcg ctacgttcgt      4860
     caccattgca gagcacagct ttctcagatc gaaatgatgg atctatctta agacgatcta      4920
     ctcgaattaa gaagaaaaaa ttggatagtg attttgtgta cctttgaatt tggaaaatca      4980
     tttaataagc atgaatagat aatcatagaa accatttagg attcaaataa acaaaaaatg      5040
     aaataagttt aagcttaaga ggaaaggtat                                       5070
//
ID   Gypsy-480_AA-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-480_;
KW   Gypsy-480_AA-I; Gypsy-480_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3086-3086 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 227 BP; 71 A; 41 C; 39 G; 76 T; 0 other;
     tgtgatgttc ataaattaca tatttatggg atcgaagcga gtctcttatt actcgggtca        60
     aatcgatatc aactgtgata tcaacactta tccagtggtc attactattg ttcgtacccc       120
     tatataaacc gttgcaataa agcatgagtg atcagtattt acaactaaag tctagacgtg       180
     tgctatttat ttatcgactg agaaaacccc atattgggta cattata                     227
//
ID   Gypsy-481_AA-I repbase;    DNA;    INV; 6051 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-481_;
KW   Gypsy-481_AA-I; Gypsy-481_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6051
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6051
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3045-3045 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6051 BP; 1959 A; 1061 C; 1435 G; 1596 T; 0 other;
     ttggcgtacg aggaaaaatc atttcgcgtt tgatttaaga ttgtgcgttg ttttgttgga        60
     aaaagtgtaa gctactggtt tttgtaaccg gaaaggtggg tgagttggag ataatttaga       120
     aattcgaaga gaaagtgcat tttcagtgaa ttttcagaaa gtgccaatat ggcggctatt       180
     aaatttggag ctgggctggt tgggtcggct tgattatgag tggatggctt tgaaaggttg       240
     agggggctgc gtgagttgaa gtgcattggt gttggtactg gtttgaaaac caaaaaaaaa       300
     actggttggg agccagaatg cagacaacgt cggattccgg tggcaatgat atgacataat       360
     tggatgtttg agtgtggagt aattcaggca gcagatggat gtggaggtgg cagtggagag       420
     gcagcagatg gaaaaagttg tgaggttaac gtaatagtat tggtggagga agtgtggatt       480
     aattcagaag ggcagcacaa aaaaaagttg aaagatgcaa agttagagta atagtatttg       540
     tgcagcatct attgaaagaa agcgctcgtg aaatattagc acatatgcat tagtgaataa       600
     cacggtgaaa aattatcaac gattgatgaa aagcaaatgg tttggtgtgg atgtgaaaag       660
     cgctggttga tgaaaacaga agacaaaaaa aaaagagaaa ttcttatgcg atgcatttca       720
     actacaaaaa aaaaataata atatgatttt aaaacagaag atagtgtatg caaaagattt       780
     gtttgcagta gcggtttgat gtaacccaga gtgagtatta ttttcaagag attgaaacct       840
     cgatacctgc ttaacggtaa gtcatttaag caaatttaat ttatgagctg tctaacgtta       900
     aaaagaatag attttgatta caaaacgaag ttgtttagaa caattaattg agttatgtgg       960
     tatataactg atagtgaaat gggacgagtt ccggattcac taggaaaacg tgagacatta      1020
     acggaattta tggagaatga tggttataaa ataagatttg agctattagt tggtaataat      1080
     ttgatgttaa ttgatattta gacattagtg aaatgggacg agttccggat tcactaaaat      1140
     agtaatgaaa ataaggaatg ggccgaaggc cggatcctca ataacaactg ttgtttctag      1200
     atgaaatggg ccgagctccg gattcatcta aagaaagatc gtttgaaaat atgagaaaaa      1260
     atgtaatagc attggtttaa ttttatataa aactatggtg gaatgggctg aattccggat      1320
     ccaccagatg acaaagtcta agttggaaaa tatttttgaa ctctgatgaa ccgctttgat      1380
     taatggtcta acattccaat gatatttaat ggtttaacat tccagcaaat aaaataaatg      1440
     tattgtaaaa tgtgaggtaa aataacaaaa acatattttt ttttattttt gtctaaacta      1500
     gagaaatgca ctaaacaatc ggaaattatt ttataaaaat atatatttat tttaattcaa      1560
     tgggacgtat attaacgaga acattatttt tttaattcat tgaaaatgca cttgcaaact      1620
     ataatcgtta ttgcacattt gtaatgtgac atagcgttgc acgacatact ggggtttacc      1680
     aattctaata ttttttctca ggacatggag acttttagac cggtgaaaca atttgatgcc      1740
     aaggttgatc aatcccagct ggccacagaa tggcgaaagt ggaaaagaag tctcgaatac      1800
     tatctcacgg cctcgggaat aacgggacag cgggaaatgc gtaatcagct gcttcacctt      1860
     ggcgggccag acctacaaga tatatttgac aatttaccag gagtacatga tgttcctcat      1920
     gtcactcctg atcctccctt ttatgatatc gccgtccaga aactggattc acatttccag      1980
     ccatgtcgcc gacgaaccta cgaaagacat gtgttccggc aaatcgctca gcttccgggg      2040
     agcgttttgg cgattttgtc atgaagctcc gggttcaggc caaccgatgc gacttcgatg      2100
     tttccggggg ttctgtaatg gaaaccatga taatcgacca aattgcggaa aagtgtttat      2160
     cgtccactct tcggaagaag atattggaaa aagatcgtac cttggaagag gtagtagcga      2220
     tcggaaagac gattgaagat gttgaacaac agtgcaaaga gttggtgaac aagaaggaaa      2280
     tcgacgaaaa actcccagaa acggtcaata aagtcaactc actacatgca caaggacaac      2340
     gagacacttg ggcatcgtcg gaaagatttt ctgctccgca aagaggattt cgtcgccaat      2400
     ttggacgagg tcaatcatct ggagctggct cattccgatt caatgtacga ggaaattcgg      2460
     acagccaaat taacagccga ccatatcgaa ctcaagaccg gccttcattt gcgtccaaga      2520
     attggacatc aaaccaggat accaggattt gttttggctg cggtcgtcgt ggtcatctaa      2580
     agggagggcc cgaatgcatc gcaaagaacg cacagtgtct ccgatgccga aatctgggtc      2640
     atttcgctaa atggtgtacg aaaagatcca tcgaagatcc cgtggaaaac cagccaggtt      2700
     caaaacggat taaagcggtt tacgatatca agaaggacca ccttgattca accttgggtt      2760
     cgacagctgg ctccgaaacc gagaagaata tatgctgtgt tatgggcgag aatcgtttcc      2820
     ggttcaaggt aggcggtatt ggaatcttga tgaccataga ctccggtgca gctgccaatc      2880
     taattgatcg acagacttgg gtgaatcttc agaaagctgg agcaaaggtg aagttcaacc      2940
     aaaaagttga tcgtacgttc aaagcatatg gctcagattg tcccttgagt atgattggga      3000
     tgttttcagc agaaattgaa gcagaagaac acaaggtgga ggccgtgttc tatattgcag      3060
     aaaacggaaa gcaatgctta cttggagacg aaactgcgaa acaacttaaa gtgttgaaaa      3120
     ttgggtacgg agtggcagca atccaccagc atgctccacc gtttccaaaa attaaaggca      3180
     ttttagtgga gatcccgatt gacccgaacg ttaaagctgt acaacagtca taccggcgag      3240
     caccatttgc tctagaggat aaaattgccg aaaagctaca gtacctacta aatcaagata      3300
     tcatcgagca agtggacgag tcttctgcct gggtctctcc tattgtacca atcttgaaag      3360
     ataacgggga aattcgtctc tgcgtagaca tgcgccgggc aaatcaagcc atcatcaggg      3420
     aaacgcatcc attaccgatt gtggaagagc ttttcggggg aattaccgga gcaacccgat      3480
     tttcgaaact cgacataaaa gaggcgtacc accaggtcga aatatccgag cgttccaggg      3540
     gaataacgac cttcattaca aagcaaggtc ttttcaggta aagtgatacg agaacggttt      3600
     ttaaataaag atttctgatt tcccgattga tcaaaatttt gttttattcg atactgtttt      3660
     cagtaattat tgttttgtta ttcttctaaa aatcaaattt gtttgcttga ttgtccatgt      3720
     gtttagattc aaacgtctga tgtttggaat tagttgcgcc cctgattatt ccagaaggct      3780
     atggaatcga tcgtagcagg acttgacgga gtagtggtgt atttggacga tattctggtg      3840
     actggtcgaa cacaaaacga acacgatgca aggttgacac aactcatgac tcgcttacag      3900
     cattatggta ttctattgaa cgagaagaaa tgcgttttca atgctgatcg tctagaattt      3960
     ttgggtcatg agttatcaag cgaaggaatt agaccaacgg agagcaagat tacagcaatc      4020
     aaatcattta gagaaccagc caacgtcagc gagctaagaa gttttttggg gttggtaacg      4080
     tacgtaggtc gattcatacc aactttggcg gataggacag agccgcttag aaatctactt      4140
     cgaactggag aaaaattcaa atggcaagct gaacatcgtc gggcatttga ggatattaaa      4200
     ttgtcactat gtcgtacacc atttctggga tactacgatc cccaagacct atgtattgtt      4260
     attgcagacg caagtccaac aggtttgggg gcggtattat tacaacaaga caagaagggt      4320
     acgacacgaa taatttcgtt tgctagcaag gctttaacgg ataccgaaag aaagtatttc      4380
     cagaccgaaa gagaagcgct ggctctggtt tgggcggttg acagatttca actctattta      4440
     ctggggaaac atttcagact cgtaacagac tgcaaaccgt tacattttct attcaaggat      4500
     agagcaaaac cttgcgctag aatagagcga tgggtaatgc gtttgcagag ctattcctac      4560
     gatgtagtgt acgagccagg ttccagtaac ttagctgatg ctctttcaag gctggcggta      4620
     ataaatccgg ttgacttcaa aggttccaac gaaacatgta tttaccaact ggttctgaca      4680
     gggttcccaa aggcagttac agttcgagaa gtagaggaag aagttctcaa agacgaagtt      4740
     atacaaaaag ttataaaatg tttggaagct ggagcatgga atgaagaaac aaaggagtat      4800
     aagccattca gctccgagct gtgcgtggtt gaaaactttt tgttgagagg agatcggtta      4860
     ataatcccag ataaactgcg agatcgagta atcgaagttg ctcacgaatc tcatccggga      4920
     atggtcacca tgaaacggag actccgtcaa aaagtttggt ggccgaaaat ggatcgacaa      4980
     gtagagaatt acgtaaaacg atgtaaagcg tgtactctgg tggcgacttg tgatcctcca      5040
     gaaccaatca tttgtactaa gattcctaca aaaccatggg ctaatcttgc aattgacttt      5100
     gttgggccgt taccatcggg tcataatctc ctcgtaatca tcgattactt cagtcgcttt      5160
     gcagaggtta ttataatgaa acaaatcacg gcacacctca cagtgaaagc tttgcatgaa      5220
     acattctgcc gattcggaat gccggaatca atcaaaacag ataatggacc acagttcatt      5280
     agctctgaat tttacgattt ctgtaagcag tttggcattg atcacttgaa aactacaccc      5340
     tattggccac aagccaacgg tgaagtggaa aggctgaatc gttcaattgg taaaagatta      5400
     aaaataagtc atgaaacaac aggatccgat tggcagtggg acttaagaac atttgtgttg      5460
     atgtataact caacaccaca ctcgacgact ggagtggctc catcgagcat gctgtttgga      5520
     aggaaactca aagacaagtt gccggggttg atgatgaaag acgagcacat attagaggaa      5580
     attcgtgacc gtgatcatat gaaaaagttg aagggagcgg agtacagcga caaacgacga      5640
     ggagccaaaa cggatgatct tgaagaagga gataaggtag ttatcaagcg cattcagaag      5700
     gattccaaac tatcaacgac ttttgattcg gaggagtaca ttgtgattag tcgtaagggt      5760
     tctgatgtaa ctctgaaatc aacagaatcc ggacggatca ttcatcgtaa tatttctcat      5820
     ctaaagaaac tctacccagc cgaaactgta caaaacgaag ctgacgatac cagggacgaa      5880
     acgaacgagg ctgatgacga ttccgaaact caacagctgc atgaaccatc gacaacttcg      5940
     gatagagcga ctgatgaagc tagtttgcga ccaagacgtc aaatgaaacg gccttcgcac      6000
     ttcaacgatt attctatgaa cacaatcatt taatgtaaag aaaaagagga a               6051
//
ID   Gypsy-481_AA-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-481_;
KW   Gypsy-481_AA-I; Gypsy-481_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-232
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-232
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3087-3087 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 232 BP; 66 A; 47 C; 43 G; 76 T; 0 other;
     tgtagcatct ctaaatttcc atatatatta accttgccaa gtgaacatcg accttaatac        60
     ttgagcttac catttcatat catacctttg tatttctatc taccttgctt gtgtgtgata       120
     cctttgtgta cgaatccgga aataaagaac gaagaggcag ttgtattgca gacgaatgaa       180
     agagcggacg cgttcgtgta tattgtcgat ccgaatcttc tacgacgtta ca               232
//
ID   Gypsy-482_AA-I repbase;    DNA;    INV; 5856 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-482_;
KW   Gypsy-482_AA-I; Gypsy-482_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5856
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5856
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3046-3046 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5856 BP; 1754 A; 1261 C; 1361 G; 1480 T; 0 other;
     ttggcgattc ctgccagaat aatcttggat tagaaattgt cttctggtat tttccagaag        60
     aaaaccggct tttttttaac tcttggaaac aggacaattt gtgaacggat tacaccgata       120
     aaaatgcaaa gaaatctaag agattgcatg gttgtgtttg gcattattgg tttgcggcca       180
     aaaggccgca aggtgttcta gaagaatacc ggaggagcgg atgaaacttt ttttgttttt       240
     tccacggttg cttcgagatg cgcattgaaa ataatgactg tattcgtttg tgacaaagca       300
     aatgtcacac ggtgttctag aagaatacca aagaagcgga agaaaggatt gtttttccat       360
     ggttgcttca atgcgcgccc tgaagcggtg attttattgg tttgtggcaa atggccataa       420
     ggtgtcctag aagaacacca tagaagcgga ggaaactgta tgttcctcca cggttgcttc       480
     aatgtttgtc tgtctggaaa atgatgattt tatttgtttg tgagaaagaa aatatcacaa       540
     ggtgttctag aagaataccg gagaagcgga agagactgac attttttcct tccatggtag       600
     cttcaaaatg cattcaagaa aatgtgattg ctctggtttg taggagaagc ttgaaaggcg       660
     ttctagaaga atgctggaga agcggaagaa tttttttttt cttccatggt agcttcaaaa       720
     caaaacaaaa ttgactgcac ctagcaaaag aatccacaga ctttcccaaa actatggaat       780
     aacttgttcg aaaatgtgtg ttaatcgatg aattccaccg cctttcattt tttgacagat       840
     tacaaaacat gttcagtggt ggcaaatacg tcttggctcc tcctgccgac gatggcacgg       900
     acgacagtga gagagattca atttgcgtgg acgacttaga agtggctgct cacgagaccg       960
     tggaaatgga cggtccaagc tgggtagaaa gcgaatttga gaatggaagt ccacgacgtt      1020
     taggagaagc gggggaaaat tcaggggaaa aacatctgcc tgaaactgat ccgaatcttg      1080
     atacggacaa cgtgaaggaa aagcaagatc ttgaacattc ccttaaagct agtcctgtag      1140
     aacggggatg caatattcgt tgggatctca ttcccaagtt tccaaaggaa atcccgtcca      1200
     acaagctttg ggaatactgg aaaaacttca tcgagaattt tgaaatcgct gtatctcttt      1260
     ctacgttcac cgggcctgcg gaccgtgcca agttattata tctgtcgctt ggaaaaacct      1320
     tgcaagatat aatcagtgcg gccaacttgc agccaaacta tcgggaccca agatgctatg      1380
     caaccttcgt cacagatgtg aacaactatt tcaagtcaat gaccgacccg gcagcggaac      1440
     acgaagcgtt attggcaatg cgtcaagcga aaggagagtc gatcgtcact ttccatgcaa      1500
     atctcacgaa acaggctcga ttgtgcggct acacccctaa tgaagaagtc cgtttcgttc      1560
     ttgctcagct tctcaagggg atgcagaaca aggagctagc gaacactgca agaacctacg      1620
     gacataacgc aagcatcatc gtgcaagccg ccaccagagt tgaagcatac gaagccggcc      1680
     agcaacgtgt ggagggtcat gcgccggaag tccttgcagt aaaccgcaaa cgggagcata      1740
     gccgagaccg tggacgggcc agaggatcgt tcaataaact gcgaaaggtt gagcagaaca      1800
     gagaatacgt gaggacaagt tcgaatgcac catcgcagga ccaccgaaaa ggtcagcgca      1860
     accgctgctg gcgatgtgga tacctgtacc acaaaagaaa tgtgtgcccc gctctggaca      1920
     aacgctgcaa tacatgtggt caagtcggac acttcgcact aacttgccgc ggaccaaccc      1980
     gtaataccgg cgttaacaac atccaggaac ctcgaaacat tcctctcaag cgccttccac      2040
     ctaattgggc acaggattca aatgacgagc aggtataaat ttcatgcaat ttctcgttga      2100
     gaggctaata aagttaacct ttgaagtaat ggcttatctc tattcaatat ctttttacca      2160
     tgatatagtc tgacactttt gacgagtttt tccatgattt cctccgtttg ttctatcttc      2220
     gttttagcaa ataaattcgg ttgtacccat gagcgatgca attgtgcgct gtcgtcttgg      2280
     ctcatctgca ccgtacgaat tccttgttga ctcaggtgct gacgtcaaca tcgtaggtgg      2340
     gtatgactgg gcatccttag aaagagaact tcgtacggga atggccaaat tggaaccgat      2400
     agatccaatc gaaattaagg agctccgagc atatgcatct gagactccaa tggtggtgcg      2460
     gtgtgctttc cgggcgatgg ttgaagtagt tgatgcaact aaacccatcg taacagcaga      2520
     atttctcgtt gttgatgaag ggcgccggtc cttacttggg cgacaaacgg caattgaaat      2580
     gaaactgttg aaagtgggcc tcgctgtgaa cagttgtggt ccatctacta cccctggaat      2640
     ttttccaaag gtaccaaacg taaaagtaag gttcagtgtg aacacatcaa tccctcccga      2700
     gaaaaacgct tactacaacg ttccagcggc atttcgtgaa gcggccagag aacgtctcga      2760
     agatatggaa gctcgaggta tcatagagcg tgtcacgaaa gcgcccgagt ggataagcgg      2820
     tatgtcggca gtgccgaaag gcaaaaatga ttttagactg gtcgtcaata tgcgtgcccc      2880
     gaacaaagcc atcaaaaggg agtacttccg tatgccctta atcgacgaga tgaaggttaa      2940
     acttcatgga gcgaaattct tcacgaagtt agatctcagt aatgcttact atcatctcga      3000
     gctttgtaag gaatcgcgtg acctgactac attcctatct gaaaatggca tgtaccgttt      3060
     tacacgctta atgttcgggg tgaactgtgc acctgagatt tttcagaggg agatgtgccg      3120
     tttactagaa gaagtcgaga acatcataat ctatattgat gatatcttaa tattcgctga      3180
     tacactggaa aagcttagag caacaactgc tcatgttctt agaatacttc gggcaaacaa      3240
     tctatcacta aacaaggaca aatgcgaatt tgataaagac ttcatcgtat ttttgggaca      3300
     tggcttggat gagcaggggt tccacgtaga agaagcaaag gtgaaagcga tccgacgttt      3360
     cagacctcca gctaatgtat ccgaattaaa aagttttttg ggcttggcat catttgtcag      3420
     tccttatatc aaggattttg gcaatatttc aagcatcctt tggaccgctt ctacagccaa      3480
     aaattggagc tgggggcccg aagaacttgc agcattcaat acgattaaag aacgaattac      3540
     aaaatgtgcg acgactctgg gctacttcgc agacaatgag aagactattt tgtacaccga      3600
     cgcttcacct agtgctcttg gagcagtact ggttcaagaa agcccaaaca agtctccgcg      3660
     cattattagt ttcgcgtcaa aggccctcac ggatactgag aaacgatacg ctcagaacca      3720
     gcgtgaagcc ctggctaccg tatgggcggt ggaacatttc tcgtttttcc tactagggcg      3780
     gcacttcaca ttgcggaccg atgcacaagg tgttgccttt atattgaacc gttcacggga      3840
     aaactcgaag agggctttaa cgagagctga cggttgggcc ctccgtttaa gtccgtataa      3900
     gtatgacgtg gaatacattc ggggtcgcga caacatcgct gatccgccct cacgactata      3960
     catcggcaac gatgaaccgt tcgatgacca tcaaagccca tgggagatag cgactctaga      4020
     ggcgaatgct gtaggattct taacggttaa agagctacaa aaagaaacag cattggacga      4080
     aacccttcag aatgtgatcg atgcattgga gacgaacatc tggcctgagg atcttagaag      4140
     attccagagt gtggcaaccg atctatcgct tgacgacgga attttaatca aaaatggctg      4200
     cgctgtggtc ccgagcaagc ttcgaacaaa aactttgaat ctggcccatg acggacatcc      4260
     catgactgca aagcttaaaa gcattttaag agagcgtgtc tggtggccag gactagctac      4320
     tgatgcagaa gaatgggtaa aatcctgcca gacatgcgca attaatggac gaccggaaaa      4380
     acccactcct atgaaacgaa tcccagttcc acaagccgtt tgggaaacca ttgcccttga      4440
     ttttaacggg ccatatgcta agtatggtgg catttcgatt ctcctaatcg ttgactatcg      4500
     atcaaggtga atttcagttg tcctttcatg ttttgtgttg ttttaacata ttcatatttt      4560
     cctttttaca ccgtaatagg ttcttgattg ctcatccggt aaaatcgacc agtttcgatc      4620
     atacccaaca agtgttggag aacgtttttg cgcgcgaagg atttcctaaa acgattcgct      4680
     ctgataatgg accgccattt aatggcgatg aatacaaaac ttactgtgct gaacggggca      4740
     ttgaaactgt tttctcaacc ccgttgttcc cacaacagaa tggtcttgtg gagaactaca      4800
     tgaaagtagt taataaagcg atggccaccg cagttaacaa cggatgctgt ttcaaacagg      4860
     agttacaagc tgctatcaat gctcacaacg cagccgccca ctcgatcacc ggttacccac      4920
     cggaggaagt gatgatggga cgcaaaatta aacgccgtct tcctctgcta cgccacgaaa      4980
     aagcaaacca ggatgaagaa gcccttaatc gcagggacac acttgaaaag ctaaaagcaa      5040
     aggaacgcga ggatgctaga aggggagcac gggaaagtcg cgtaagccca ggggatacag      5100
     taatcatcga acgaccaacg cgtgcaaaag gcgaaaccag attcgacccg caaaagtata      5160
     ccgttattcg agaggataat ggaaaccttg ctttgcaaaa tgaacgcggt caaactttga      5220
     agcgacatgt aacccaaaca aggaaagtag gacactggcg cactcctatc accgacgttg      5280
     acaacgatcg tccaaccgag ccaaacggaa atctcccagg tactaatcca tcagagcggc      5340
     ctcaaagggt tagagttact ccggcccgtt tgagggacta tgtacaatca cttgaaactt      5400
     gatgcacaag ctaatttaac tgcttttgtt tactctattt tgcatcagct gccgcctttt      5460
     aaatcaattc acattacctg aaataaagaa aaaaatgtca atcaaaacaa taatctattt      5520
     acgcacctgt ctttctttgt cagaatttga gcaaaatcta tatacgtacg ctctatttac      5580
     caacaaatag ctgtaaacaa agacgccgtt ttgaagcgat gactgaagca gagcagacca      5640
     gttatatcga ataaacactg aactgaaatt tatgtcgacc taaaactcct gacatgtcga      5700
     ctgaattatt tcaatttgaa ttatttctcg cgcaattttc gaaaagggct taagcgaaca      5760
     tatagtttat gcttcacgta cacgtgttag taaaatgaac ttttaatcaa agtgaatttg      5820
     aataaataaa agtcttaatt ttgtgtggga ggagga                                5856
//
ID   Gypsy-482_AA-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 25.10, Created)
DT   11-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-482_;
KW   Gypsy-482_AA-I; Gypsy-482_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-233
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-233
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3088-3088 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 233 BP; 60 A; 68 C; 57 G; 48 T; 0 other;
     tgtgtggtag taatacccct cgaatcggga tgttaaccgt gcagcattaa gccgaacact        60
     aatcggcctc tgagcacgat tatagccgat gggtcgcccg cacactcggc aagcaacaac       120
     gaggctcgat cgctagcaac ggtcgtcctc tttctcatcg gaccatcaac gagtgtagac       180
     gcttttggta agcagcaaat tcatccccga agctggcagc cgaaatccgc aca              233
//
ID   Gypsy-483_AA-I repbase;    DNA;    INV; 5410 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-483_;
KW   Gypsy-483_AA-I; Gypsy-483_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5410
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5410
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3047-3047 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5410 BP; 1643 A; 967 C; 1319 G; 1481 T; 0 other;
     atttggcgac gaggactaaa aacagtgaaa taagtgattg aagaagtgaa aatagtgtgt        60
     ttggaaacaa ttttcgattt cggctgtctg ttggaattcg gctggcctag caagagcgct       120
     agcaccgccg cagaggtgta accaagagag gttagaattt gcctgagcat caacgtgagt       180
     acctaacagt tatgagagtg aaagaggaag atatacttta ctgctaatat taccgttcgt       240
     ttagatgggg aaatacacca gttatgcaga gtggaaaaaa ataatcacag tggggtgagt       300
     gcattttttg tgcgaactaa ataatatgaa attaatgttg ggtgtcgaat cgaatccaag       360
     tgttcgattg tttttttttt tttgagttgt gattgatatg agttacttgt taggttcctg       420
     ttaaattata ctgaaattaa aatgcatata tactaagaaa acgtacgttt tagcgttgat       480
     aatcctttgt tgttgttttg ggtttggaaa aatggtggtt atgcagcaaa tggagaatcg       540
     tgagtattaa gtaactatga tacgaaagtg tggaaagttc agttccaaac tggggatgat       600
     taggtatcaa aggaaagaag actgaatacc aaagaaggtg tacatgagta catatgattg       660
     cgtatcaaaa tggtgttggt ttattttcaa ctgcgagatg gttcagtacc aaacataaac       720
     acagttgggt tgagatgatt cagcatcaaa ataaagatgg ttgtgtacca aaatgaatat       780
     ggttgtgtac caaaatgaat atggttgtgt accaaaatga gtatggttgt gtaccaaagg       840
     gaagaaggtt gactaccaaa gtgtaccaaa atagtgatgg tttagtaggg acgttgagat       900
     ggttaagtac caaaattgat atggttgtgt accaaaattg cgatgtttct tttccaaagg       960
     tgagatggtt gtgtaccaat agagaaccgg ttatgtacca cataaaaaag ttcgtgtacc      1020
     acataaatga aaggcatgta ttatactaaa tgggaacgtt aacatcatac tatttgttgc      1080
     gaatattgtt gaaatactaa tgtgtgatat tgaaataaat aaatgttgaa ttaaagcttg      1140
     cgttttattt aatcaaataa ggttttccac aactgcaaat aactggtgta taaagttgtc      1200
     tatttcggtt aatgggtagt aattgatata aaagctaaag cggcacatac ctaagagact      1260
     gttactaccc aaaactgttt acaggatggc tgcatcgagt cgaatcaaac ctttcgatgt      1320
     aacgttggaa gctagtcgcc tgccttctga atgggagtca tggaaaaatg atttggaatc      1380
     atttttccta gctcaacgtt tggaatcaca gcaagataaa cgagctcagc ttgcgtattt      1440
     ggggggacca ggcctccagg aattactgcg ctatctacct ggagtaaatc aagtaccaca      1500
     tgtaacagct gaccccccat attatgacgt tgcaatcaaa tgtttggatg actattttga      1560
     accgttccgc cgtaaaactt ttgaaaggca tcttttccat caaatagttc aacgaccgga      1620
     agaacgtttt accgactttg tcatgcgtct acggaagcaa atagctcaat gcagctacaa      1680
     cccttgcgtt gtagatgagc tgatcgctga tcggattgcg cagggatgca gctccgagga      1740
     tttgcgcaca aagctactgc aaaaggatcg aagcttggat gaaatcattg cattgggcac      1800
     tagtatggca gagtctcttc aacagtcgaa aaagtttggg aaatcatcag taccgatcag      1860
     gcaagagcag gagatcaata gcgtcgtgaa gcctttacgg cgggttttcc aaggcaatca      1920
     acgaagtggt gttaagaact cgtctgctgc gtttcgttca tcgaatgatc ggttcatttg      1980
     ttatggttgc ggccgtcgtg gccataccca gggaactatc gaatgtcctg cacgacagac      2040
     gaaatgcgct atatgtggca aaatgggtca ctgggccaaa cgttgctaca gttcaagagg      2100
     tggtacaaag cgtcggatgt atgacccacc agcaaatccg gcaccgccgg ttaagcgtat      2160
     acgagctgtt gaggaagagt cggataagag gaacgccaag gattatgtgt tttatgcgat      2220
     gggaagaaac ttattcacat tccgagtagg tggagtggag attccaatga ccattgattc      2280
     tggagctgat gcgaatatca ttccaaaaag catttgggat gagttgaagg aggcaggagt      2340
     aaacgcatcg aatatgagta ctgtggttga tcgatcgctt ttggcgtacg cgtcaaagga      2400
     tcctatgaag atcgttggaa tgttcaatgc ggaaatcgaa gcggcagaaa gcaaagcgac      2460
     tgctacgttc tatgtggtgc aagatggcca acgttgtctt ttgggagacc aaacagcaaa      2520
     ggagttaaag gttctcaaag tcggttttga tgtaggggca atagaagcga agcaaatcaa      2580
     cccgttccca aaaattcgag atgtagtcgt ggaaattcct attgattcaa atgttcaacc      2640
     agtccaacag ccatacaggc gtcctccaat agctttggag aagaaaatcg aagacaaatt      2700
     gcgatcgttg ctggagcgag acattatcga accggcaccg ggaccatcac cgtgggtatc      2760
     tcctgtggtg ccagtagtca aagactcagg tgaaatacga ctatgcattg atatgcgacg      2820
     ggcgaatcaa gcggtgttgc gagagacaca ccccctgcca ctagttgatg agctcctggg      2880
     ttccgtcgat ggtgcagtga agttctcaaa gatcgacatt aaggatgcct accaccaggt      2940
     agaaatctca gagcgttcgc gaccagtgac aacgtttatc acaaaacatg gtttgttcag      3000
     gtagatgatt gattggaata aatgtttttt ttctccttcc tttttgttga aatttccaaa      3060
     taaattagat ttatcgattt gtcgtttctt ttacatttca catatcaggt acaaacgatt      3120
     aatgtttggt gtaagctgtg cgcctgagtt atttcagaag gtaatggagt cgattctagc      3180
     ggatctggac ggcataatca tttatttgga tgacattgtt gttcatggta agactcaaac      3240
     agaacatgac gagaagcttg ccgctgtttt gagtcggttg tctgaatttg gtgttttgtt      3300
     gaacgaacag aagtgcgttt acgatgttga aagcttggag attcttggtc atcagctttc      3360
     ggtacatgga attcgaccaa cggaaagtcg agtagctgct ataagaagtt ttcgagaacc      3420
     gcataatgtc tctgaactga gaagcttcct gggattagta tgctatgttg gaagatttgt      3480
     gccacacctc gctactaaaa cggattccct taggcaacta cttcgatcag gagttcaatt      3540
     caactggaca gtcaaggaaa gaactgcttt ccaagggatt aaagatgcaa tgtgtcaaat      3600
     acatcacttg ggattcttca atccaaaagc acatacaaaa ctgatggcag atgcgagcgc      3660
     aacaggacta ggagcagttc ttctacaaga ggatatttct ggtaactgtc gagtcattgc      3720
     gtatgctagt aaagcattga cggacttaga aaaaaagtat tttcaaacag aacgagaggc      3780
     gctttcattg gtatggggag tggaaaaatt taagctttac ttgcagggag tgaagtttac      3840
     acttttaacg gactgcaagg ctttgaaatt tttatttagt ccacggtcaa ggccatgtcc      3900
     acggatcgaa cgatgggtcc ttcggctgca ggcatataca tatgatatcg agcatgtcca      3960
     aggatgtgcc aatattgctg attgtttgtc taggttgagt gtgtctatac cggagccttt      4020
     cgaagaagct atggatggat atatacacca cgtagctcaa ctagctgcac ctactgcggt      4080
     aacactcgat gaagttaaga aacatactcg ggaagatcac ataatccaga aagtttttga      4140
     atctctgcag tctggatccc tggatttgat accgaaagag ttcaaaccat ttgtaaatga      4200
     gttacacagc gttgacggac ttttgctgag aggtaaccga ttagtaatcc cctcgatttt      4260
     acaagagcaa gtaataaagc tggctcacga atcacatccc ggcatagctg caatgaaacg      4320
     cagactaaga caaaaagtct ggtggccatt tctagacaag caagcggaat catgtgtgaa      4380
     aaggtgcaaa cagtgtattt tggtctcatc tttgggacct ccagaacctt taaagagaaa      4440
     ccgtatgcca gaacatcctt ggacggatat tgctgtagat tttatgggtc ccttgccatc      4500
     tggccactct ctttttgtat tggttgatta cttcagcagg ttcactgaag ctataatcat      4560
     gagacagact acggctaagc gtacagtaga agctttacac gagacgttct gcagatttgg      4620
     attcccggag acaataaaat cggacaatgg accgcagttc attagcgaag acatcaagag      4680
     atattgcgaa gagtatggaa tcgttctgct taaaactaca ccttattggc cccaagcaaa      4740
     cggggaagtg gagcgtgcta ataagaccat actcaaacat ttgcaaataa gccaagaatc      4800
     tgacagcgct gattggattt gggatttgag atcattccta ttaatgtaca actctacgcc      4860
     acatagtaca actgtagtag caccttcttc gctaatgttt ggacgactac ttcgtgataa      4920
     attgccagtt tatagtggat catcttcagg cacagatgtg gaggagattc gagataaaga      4980
     ttgggagaag aagctcaagg gggctgaata tgcagactca cgccgtcaag caaaaccatc      5040
     tagcttgaga gagggggata ccgttgttgc taagcgagta caaaaagtga acaagctttg      5100
     tggaacattt gctccagaag aatatgaagt tgtcgaactg aaaggttctg acgcaacatt      5160
     gaaatctaca gaatctgatc gtgttataca tcgcaacgtg tctcatctta agcctttgcc      5220
     acggagtgtt acagaggatg aacttcctga agatctatca ggtcaagcac aggaagcggt      5280
     ccagaatgag aggaacgttc atactggtga agtgacagga cgaaaagttt cagctcgaat      5340
     gcatcgcaga ccagtgtact tagatgaata tcatatcaac gaagttgatg actttaatgt      5400
     gtagggggga                                                             5410
//
ID   Gypsy-483_AA-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-483_;
KW   Gypsy-483_AA-I; Gypsy-483_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-230
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-230
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3089-3089 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 230 BP; 67 A; 24 C; 64 G; 75 T; 0 other;
     tgtagagtct aggaatgtat tggccctttg cagaagtagg cttggtttga cattacttca        60
     gtgcaatggt attgatgcga ggtttagtgt gtgtgagagc aagactgagg ttggtaacaa       120
     agaaagtgag ttgacggttg tatcgagcgt gtcagttagt ggaaaatata aaatgtgaaa       180
     ttgatttata aagtgtattt atttaatcat tggaagtccc cgattgtaca                  230
//
ID   Gypsy-484_AA-I repbase;    DNA;    INV; 5446 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-484_;
KW   Gypsy-484_AA-I; Gypsy-484_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5446
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5446
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3048-3048 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5446 BP; 1773 A; 907 C; 1308 G; 1458 T; 0 other;
     ttggcgacga ggagaaaatg tgagtattca gttcattcta ctgtaatttc ataaaaacga        60
     caatgccaca catcattctg tgaaatgcaa tctgaaaatt ttgtttcaaa ccggccgatt       120
     cgaaagtgaa aattcaccat ggcaaccatg gtgaaacgtt tcaaaaagct ttagttcggt       180
     tgttgaaatg ttgcacatca aagttttgga taaagcttgg gataaagttt acatgataga       240
     tccgattgaa acggtttgta acgcaaagaa aacagcttgt atcgaaaaca aaacaactgt       300
     caaaaatgaa atcagtgaat gataaacaaa caatctggag aagtgttttc aatggtatat       360
     tgataaataa atccaataag gaagctggtg gttgaataac aaataaataa ttaatttaaa       420
     atgtaatttg tggaatagga tctgaggaaa aattgacaaa atttgatata agaaatgaat       480
     aatatcatca aggtaagtgc tgataaatat agtattggaa caaggttgaa caacatcaag       540
     tgcatgtttt tgaaaatatg tgaatgaaca tgttgattaa atacaactct gaaggtagat       600
     ataggaaggt tcgtcatata acaaaatgat ttgttacatc agaaacgtca gacacagatt       660
     gcgataaaag aaacttggcg ggatcgtcaa aagtattgat agtgattttg aattattaaa       720
     agcgggttcg ctatagtctc aagtgacgga atcgccaaaa ttgagtttgc taaactcata       780
     agcggcggaa tcgccaaaag cgggttcgct acacacttta attgcggaat cgtcaaaagc       840
     gggttcgcta aattcgtaag tgacggaatc acctaaagcg ggttcgctaa actcataagt       900
     ggcggaatcg ccaaaagcgg gttcgcttca cacttaaatt acggaatcgt ctaaagcggg       960
     ttcgctaaac tcataagtgg cggattcgtc aaaagcgggt tcgctaaact cataaattcc      1020
     gaaatcgcca aaagcgggtt cgctaaacac ataaataacg aaatcatcaa agcgggttcg      1080
     ctaaattctt agatggcgga atcgccaaaa gcatgttttg cttaatactt aaatggtgga      1140
     attgacaaaa gtgggttcgc tgaaatacat aaaagcaaaa tataagatta ataatcatgg      1200
     gaaatgtata ttaaaggaat gatgtgtgag caaaagcgtt ttatgaacaa cttaataata      1260
     aaataaaatg aaataactta tagttgtatt gttcttttta atggctggtc gttttaaaat      1320
     aggaccagtg gcgaacttcg aattaaagtt ttccaaacga atttggattc ttctcagctg      1380
     cctttggcgt ggtccaaatg gaaacgagac ttggagtgct attttgaatc agagaaaatc      1440
     tgttctcaat acgataaacg gtccaaactt ttgtaccttg gcggctctga tctaagggac      1500
     atttacgaca atcttccaga agtcgaaaat gtagcacatg ttttgcagga tccaccttat      1560
     tacgacgttg cgatcgccaa gttggatgct cattttgagc cgtatcgtcg acgtacgtac      1620
     gaacgacatc tctttcggca aatatcccaa ggagcttcgg aacgttttgc agatttcgta      1680
     ttgcgtttga ggacacaagt caaacgttgc gaatacgaca agccggaaga aatgattctg      1740
     gatcagattg tcgaaaaatg ctcatctact aagctcaaag agaaaatgtt gaagaaagat      1800
     atgctcttga gtgaagtaga aggactaggc actagcttgg aagaaacagt acggaaatta      1860
     aaggaattcg gaaatgcgat taacagtgac tcagttcata gtgtggcgaa aaagctgccg      1920
     tatggaaaat acgatgcgat gaggaaagtt cgtcagagcg gggcaacccg tttccaaccg      1980
     gggcggagag attcaaattt ttatcaaaaa agcggttcgg ttcctgtttg tttttcttgt      2040
     ggaaaaagag ggcacgttaa gggtgctgat atttgtgcgg caagagacaa atcctgtctg      2100
     aaatgtggag gtaccggaca tttcgcgaag caatgtttga agagagtgaa taacgaggag      2160
     agagcagttg taccaccgaa gcggattcga gcggtttgtg aagagttaga agcggacaat      2220
     gatgacgaat acatctttta tgccatgggg aaaaatactt tcctattcaa agttggaggt      2280
     gtggaaattc ccatggttat cgattccggt gcagcagcga acatcataag ccagaaagtt      2340
     tgggagcaaa tgaaacagct gaaggtgcaa gtgtggcaga tgtcaacggc tatagatcgg      2400
     aatttcattt gttatgcgtc caagaaaccg atggagatta cgggcagttt tgtggcagaa      2460
     gttgagggtg gaggaaagaa aatcgatgca aagttctacg ttgcgaaaga aggccaacag      2520
     tgtttgcttg gtgatcagtc tgcgaaatta cttcaagtac tgagggttgg attcgatatt      2580
     gcgcatgttt ctcaaagttc tggatcagaa tttccaaaat tcaaaggtgt gacagttgaa      2640
     attcctgtcg acaaccaggt acaacccgta caacagccct accggcgtgt tccgtatgcc      2700
     ttggaggaga aaatagacga aaaactgcgt atgttgcttc agcaaggaat catcgaaaaa      2760
     gtgaaaggtc cgtctccttg ggtatcaccg attgtaccag ttctgaagga ttcgggtgat      2820
     gtgcggctgt gcgtggatat gcgtcaagca aatcaagctg tgattcggga aactcatccg      2880
     ttaccgttag tggacgaaat tctgggctca atgaatggtg caaaatattt ttccaaggtg      2940
     gatatcaagg atgcgtatca tcaggtggaa atatcggaga gatctcggcc aataacaact      3000
     ttcataacga aaacgggtct ctacaggtaa tcttgtactt taatgccatg taaatttaaa      3060
     taaaactgat tttcttttgt tttgtcttca tgaacgtatg tttgtcaata ttagatacaa      3120
     acgacttatg tttggagtta gctgtgctcc cgaaattttt caaaaaacta tggaagcgat      3180
     attattaggc cttgagggag ttatcgtgta tttagacgat gtagtagttt acggttcgac      3240
     taaagaagag catgatagaa gagtagaggc tctactggag cgcatgaagg agtatgaaat      3300
     tctattgaat cagaacaaat gtattttcgg tgtaaaagaa cttgagttct taggtcacgt      3360
     gatgaatgaa tatggtattc gacctaccga gagtcgcatc gcagcagtga agagctttag      3420
     ggaaccgaaa acgattggag aattgcggag ttttcttggg ttaattacgt acattggtcg      3480
     atttattcct aacttagcag aaaagacaga gccgttgaga agattacttc aagttggatc      3540
     atgtttccaa tggaagaaag aacaacaaga tgcattcgat gttataaagc aggctgttgg      3600
     taataccaaa tatttgggat ttttcgatcg aaacgataag actaaattga tcgttgatgc      3660
     gagtcctgat gggttaggag cagttcttct tcaggaaagc aaggaaggtc agaacagaat      3720
     tatttctttt gcgagtaagt cactgacaga tttagagaga aagtattttc aaacggagcg      3780
     tgaagccttg gctatagttt ggggagtaga gaagtttagt ttgtatcttc tgggagccaa      3840
     atttgagctt atcaccgatt gcaaagcttt gaaatttttg ttcaaaccac gatcacgacc      3900
     ttgccccaga atcgaacgat gggtcctaag aatccagtca tacaactatg tgattaagtt      3960
     tgaaccgggt tccaccaact tagcagacgc tttatctcgt ctatcaatta acaaggccca      4020
     gtatttcgat agatcagcgg atcagtatgt taatcatctt ttggaacacg ccgtaccaaa      4080
     tgcagtcaca cttatcagag tgattgaggc tacaaaacaa gatcaagttt tgcaggaact      4140
     cattaatgcg ctgctgattg gctattggac gaacaacttg aaagatttca aacacttcaa      4200
     gtcagaaatt catagtgcta acggtgtctt gatgagagga gatcgattga taatcccaga      4260
     atcacttcaa caacaagttc tacaatgttc tcatgatggt catccaggaa tgagtctaat      4320
     gaagcgacga ttgcggcaga aggtttggtg gccaaagatg gacggcatgg ttgaaaaatt      4380
     cgtcaaaagc tgtggggcat gcacattagt ttcagctgtg ggacccccag aaccaatgct      4440
     tcgcactaaa atgcctgaaa aaccgtggac ggatgtagct atcgattttt taggaccgtt      4500
     accttcggga cattatttat tagtgttggt tgattatttt agccgattta cagaagtgat      4560
     tgtaatgaag caaataacag cagaacttac cgtcaacgct ctttttgaaa cgttcagtag      4620
     atttggaatt ccagaaacat tgaggtcgga taatggacca cagtttatca gcgaaccttt      4680
     caagaatttt tgtgaagaat acggaatcac gcatcagaag acaactcctt actggccaca      4740
     ggccaatggt gaggtagagc gaatgaatag cactattttg aaacgtctac gaatcagtca      4800
     agaagagaag tgtaagcact ggaagtggga tctaagaagt ttcttgttga tgtacaactc      4860
     gacaccgcat tccataaccg gaattgctcc atcagctttg atgtttggaa gagtattgag      4920
     agataagctg ccgagcatca atgtttcttc tggtattatt ccagaaggaa tccgggaccg      4980
     tgactgggag aagaaactga aagcatcagg cgtttccgat gctcagagac atgctacaag      5040
     gaatgacttg aaagaaggag atgtggtggt agctaagcgg atcatcaaag acaataaatt      5100
     gtctacgaat tatggatcag agctgttcga catactagcc agaaaaggtg cagaagcgga      5160
     aatccgatcg aaggagtcgg gaaagatata tcgccgtaat gtgggtcatc tgaaacgttt      5220
     tgttcaagga gagcaagttg aaggggacga ggctgtagaa gcagaagcaa ataaagtcgg      5280
     agaaaccgtt gaagtgatcg gcaagcaagt tgagtcaagc gctgcaatag atgaagaaac      5340
     aacagctcgg cgcagtcggc gtgaagtgaa gattccacag tatcttaaac attatgtaac      5400
     tcatgtagat gaaaatgatt gttctgatta ctaagtaaag ggggaa                     5446
//
ID   Gypsy-484_AA-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-484_;
KW   Gypsy-484_AA-I; Gypsy-484_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-165
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3090-3090 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 165 BP; 59 A; 13 C; 42 G; 51 T; 0 other;
     tgtagtatcg cgttaacgta ggaagccatg ggcttgagag ttagttagat tgtggaagag        60
     aaatacgaag gaagtgttga atatacggtg tgttgtggag taataaagat tggtgtttaa       120
     tattgtaaac tataccgaaa tatcaatata atacagaata ttata                       165
//
ID   Gypsy-485_AA-I repbase;    DNA;    INV; 5426 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-485_;
KW   Gypsy-485_AA-I; Gypsy-485_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5426
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5426
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3049-3049 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5426 BP; 1728 A; 937 C; 1266 G; 1495 T; 0 other;
     gttggcgacg agttgaaaat aatacagtga attatcgttt gaagagataa atcgagaatt        60
     tttcctgagc taacggttgg tttgtgaaaa ttttgtgaaa taatttgtgg aaagattgcg       120
     gaattgtagt tggaggtaag tctagaaatg ctcgatgtaa ggaagtgaga ggaatcaaat       180
     ttgtgcgttg cccaaaagaa gtaacttgca gcagaaaaat ggatggaaat tagtgaaatt       240
     tgtgctttgg aatattaata ctcccgaaaa aaaaaaaaaa aatggctgaa aaaaaaaaaa       300
     aaaagaatga aattttcact cgttttcgtt tctatggtaa cactgccatg ttggagaaaa       360
     tttaagtccg cacatttcta acactggggt atcagatgtc attcctatta gaatacacct       420
     gacagctgtt tgttttgtcc atgaatgaat cgaaagtaaa taagaatgga atcaggtttg       480
     tcagtcttga tttctagtgc tagaagaaaa tggttgaaat taaataaaac gtaacgtata       540
     gattgtattt tgtgaacgat tttgaatcag atgtaggaat ttcaattaat ggtatgatga       600
     gtgttgtgaa gtgatcggca attatgtgcc aggagagcaa ctgtgtgcta tgaaaagaac       660
     ggcaaatgat tgccaggaga gcatctgggt gctgaaaaaa aaaaaattgt cggcagatat       720
     gtgccaggag agcaactgtg tgctacaaca taatcggcat ttctggcctg gagagcaacc       780
     gtgtgcttca ctatgattat tttgaataat tagagaacaa tttagtacca ttgttggttg       840
     gaaaaggagg taagtggcct gtaatgattg atgattctta taagaaattt gaatttattc       900
     aatggaaaca tttactgtta tggtgtgttg gaatgacatc tagatttcaa ggtagcatag       960
     cggtaaaaaa aaagtgaatg attcaaaaat agaaatgaat aaaagtatgt aaaacaaaac      1020
     tgctacatta gctttttcat tacactgaat caaaaatatt atctgatttc cattcgtttt      1080
     tcggcataca ttatataatt tactgattgc ataccaaccg atattaaact gtttgaatag      1140
     gatggaatcg tcaatgcatc gcgtgcggcc cttcgtgttt ggtgctgatc gatctcagct      1200
     gcccacggcg tggcagaaat ggaaacgaga actgcaaaga tacttcgacg cgtgtggaat      1260
     aacttctcag tgggaaaaac gttctcaaat gttacatctg gctggttctg aaattcagga      1320
     gatttttgat catcttcctg gagtgaataa cgtatcgcat gtacttactg atccgccgta      1380
     ttatgatgtg gcaattcagc gacttgacga acattttgag ccaatgcgta atagaaatta      1440
     tgagcgtcat ttatttcgcc aagtagtaca gaagcaggat gagagattcg cggattttgt      1500
     gttgcgtttg cgtattcaag ccaaacgatg cgagttcgac agatatgatt gtcgtgaaaa      1560
     cgatgacaga atcatcgaac agattgtaga agcatgcgtg tctaccgaac tccgtagaca      1620
     aattttggcg aaagatatgt cattggagga aatcgtttct cttggaacca ccttggcaga      1680
     tgtccaacaa caggtgaaga acatggatcg tggtccaacg gaaaatgaat tttcgggagg      1740
     tatgaaaacg cgttatacta tggagtagtc aatgttgttg atggtccccc atttttaatt      1800
     caaatttatt ttgtcttggc ctaggtatga acaagatatt caagcgctct gttaacatga      1860
     attcatattc ttcagaaaat cgttctgacc ggtactctgg tagggttcat cgagattctg      1920
     gaagggtgga tagagctttt ggtagaaatg aaccaaattc tattacggat gcgcgttcgg      1980
     gagcgaagac ttgttttgct tgcggacaac gaggacattt taaaggcgat cccgcttgtc      2040
     gagcaaagaa agctaaatgt ctaaaatgtg gagagctggg acattatgca aaccgttgct      2100
     taaagcgatc caatactaat tacaatagtt ttaaacctaa acgtttgcgg ttgattgaag      2160
     aagagccacg tgacgttatc aatgatgagg ttttctatgc gatgggcaag aacacattcg      2220
     aatttatcgt aggcggtatt aagattccga tgataataga ttctggtgcc gatgctaacg      2280
     tcatcactga agaaacgtgg cagaaagtga gtaatgcagg tattgaggtt ttggaattca      2340
     gtcaggaggt tgatcgtaat ctgatcggat atgctacgtg caagcccatg aaaatgtcag      2400
     gaatgtttca agcaatgata cgtgctgggt tgaaagaagt tcaggcaaca ttctacatag      2460
     tcgaacaagg acagcgtaat ctactcggcg ataaaaccgc taaacagctg gaagttttga      2520
     aggttggctt cgacattgct tcaattcgaa atacatctgt cgagttcccg aaaatcagag      2580
     gcgtgattgt ggaaatccca atcaacgatt cggttcaacc tgttcaacaa gggtataggc      2640
     gtgctccaat agctttggaa gggaaaatac atgagaagtt gaaatcacta ttggataagg      2700
     acattatcga aaaggtcaat ggaccatcac catgggtgtc accaatggtg cccattatga      2760
     aagcatctgg agagataaga ctttgcgtcg atatgaggcg cgctaaccaa gcggttcttc      2820
     gagagtctca tcccctgccg cttattgagg agttattggg aagtctaggc gatgcggtga      2880
     agttttcgaa gttagatatt aaagaggcgt atcatcaact ggaactgtcc gaaaaatctc      2940
     gcgaaatcac tacgtttatc acaaagtatg gattgttcag gtaaagtcac ttaacatgat      3000
     caaatgataa aaaaaaaata aagacataca ataatgaaga cttatttatt ttataatcat      3060
     tctcagatac aaacgtttaa tgtttggaat ttgctgtgct ccagaacttt tccaaaaagt      3120
     aatggacacc attgtggcag gtttagaagg agtagtggta tacttggatg atatattggt      3180
     ttttggccgt tcacagcaag agcatgactt gagattgaaa gagctgatga accgtttaga      3240
     acattacggg gtccttttga atatggaaaa atgtctgttc tgcgtggaca aattggagtt      3300
     tctgggtcat gagctttcgc cagagggaat aaagccgaat aaaagccgag ttttggctct      3360
     tcaacagtgt cgtgaacctg ctaatgcagc ggagctaaga agtttcctcg gattggtcac      3420
     ttatgtgggt cgattcattc ctcacttggc taccaaaaca gatccactgc gtgctctact      3480
     gagatctggg aacaaatttg aatggacaaa caaacaaaaa ctggcctttg aggcgataaa      3540
     aagcgccatc tgcaaaataa gtcacttggg gttcttcaac gtctacgaca acaccattct      3600
     gataactgac gcaagtccca cgggtctcgg tgctgtactt ttgcaagaaa atgcacaagg      3660
     agaacaaaga gtaattgctt acgctagtaa atccttaaca gatttagagc gtaaatactt      3720
     ccaaaccgaa aaagaagccc tgggattagt atgggcagtg gatcggttta acttgtatct      3780
     tcaaggaata cggtttaaat tagtaaccga ttgtaagccg ttactatttt tgtttagtcc      3840
     acggtcgaag ccttgtgctc gtttggaaag atgggtattg cggctccaat catataacta      3900
     cgacatagtt tacgagccag gtgcttctaa tctcgcagat gcattatcaa gactctcact      3960
     tgcagactct cagccgtttg atgcagaaaa tgaacagtat gtacaatttc ttacgaatgc      4020
     atcgacacct gttgctttga aacttgaaga gataaaagct caatccaggg aagatgagat      4080
     tatttgtgga gtaattcgcg cacttgcagg aagtccatgg gtagagatag cttcgccatt      4140
     taaaccatat gccactgaac tatgtgtatg ggaagatgtt ctgcttcgtg gagaaaggat      4200
     tgttattcca caatcgttac atgatcaagt gttacacctg gctcatgaag gacatcctgg      4260
     aatcgtagtt atgaagaggc gattgagaca aaaagtgtgg tggccgaata tggataaaga      4320
     ggtcgaaaaa tttgtcaaac gttgcagaga atgcactcta gtgtcttccc tttctcctcc      4380
     ggaaccactg attcgaacga aaatacccga gaaaccgtgg actcacatag ccgttgattt      4440
     tatgggacct ctaccatcag gacataactt gttggtgctc gttgattact tcagtcgctt      4500
     cgtagaagtg atagttatgc gagaaattac agctaagttg acggtacaag ctcttcacga      4560
     atctttttgt cggtatggaa ttcctgagtc gatgagaact gataacggcc cacaattcat      4620
     aagcgagaca ttaaatcagt ttgcatcaga atttggaatc gaattagtta aaacttctcc      4680
     ctattggcct caagcaaatg gtgaagtgga aagagctaat agagccttga agaaacgtct      4740
     gcagatcagt caggaaacac caaattctga ttggaagtgg gatttgagaa tgtatctttt      4800
     gatgtacaat tcgactccac attcaaccac cggagttgct ccatcagctc taatgtttgg      4860
     aagagtacta cgagacaaac taccatcaat gccatcattt gataacaaat tgatcgagga      4920
     agtaaaggat agagatcttg agatgaaaat gagaggttct gactacatcg atcggcgtag      4980
     acgtgctatg ccaaactcca tatctgtggg agatactgtg gtggccaagc gtgttaataa      5040
     agagaacaaa ctatccagta actttaatcc agaggaattg gtggtagtcc aacgaaatgg      5100
     atcagatgct acgctgcgat ctaaggaaac cggaaagacg tttcatcgaa atgttactca      5160
     tctcaaaccg attgcaacag aacaccaaat tgaagataag gaaataccgt ctcaaaccga      5220
     ggatgtatca gagtccggta ctggacaaga accaaccgga attccgtcgc cattcagagt      5280
     ggatcagcat atggatgaac aagggacggc gacgaattca aaacagacag tgccacaaca      5340
     aagacctcat cgaagttatc gacaaccggg ttacctgaat gactatagtt tggctacagt      5400
     tcaagacatg taagaagaag agggaa                                           5426
//
ID   Gypsy-485_AA-LTR repbase;    DNA;    INV; 150 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-485_;
KW   Gypsy-485_AA-I; Gypsy-485_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-150
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-150
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3091-3091 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 150 BP; 39 A; 25 C; 28 G; 58 T; 0 other;
     tgtagtgtcg gtgacgatta cacgttacat gtttgctttg tataaagatt ttgaattctg        60
     tagatcatag ttgccatgat aaataaacgg tctctttttc gatcacagta ttgtaaacca       120
     gtcgactttt acttgtgctc cgatatttca                                        150
//
ID   Gypsy-486_AA-I repbase;    DNA;    INV; 5275 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-486_;
KW   Gypsy-486_AA-I; Gypsy-486_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5275
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5275
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3050-3050 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5275 BP; 1673 A; 920 C; 1228 G; 1454 T; 0 other;
     ttttggcgac gattggaaaa agcgaaggct ggctgaaaaa ttaattggat ttccagtttg        60
     aagaagttac taattgtgtg taaaacgttg aatttgtggc cttatttatt caaggtaaga       120
     atcaagtgag acttttaaac tatcgaaacg cataggttta agcatgtgaa gaaaacggtg       180
     gatggaaaag ctgattcgga ttcattttca atttgattag tatttcagta ctaaacgtgg       240
     tcatttcggt tctatttgat gagaaaagaa gtgaaaaaaa aaaatgtgat tttcattttc       300
     tcaaagaaaa aaaaaaaagt tttctccaac atgctccgtt gctatgggaa ccctggtgta       360
     gaacatggtg gttatcaaca accatattat ttgcaatggg tgctcgtttg tcattcatga       420
     caattagtct tattggaatg gaatctgaca gttccaatgt tttgattgat tatgcgagga       480
     tctgaatgaa atagttacca agtatttatc agtttgtttt gtgtgttaag ttgtgttatg       540
     aattgaggga aaaactaaaa aaaagcatta gaacctgaat gaaaaagcaa ctgtgtgcga       600
     tagaaaagtg actagaagct gagtgaatat aggcaactgt gtgccattgg aaacagcaac       660
     tgtgtgctga tggtagggcg gcaactgtgt gccggaagga aaacaaatag tttaaaagag       720
     gaggcaactg tgtgccgaat ttgaaacgac cgtgtaaaat tgaaaaactg caactgggtg       780
     ctgcagctgg aaggcaactg tgtgccagag attaatgtta tgctccaaga attcgtatac       840
     taaagtatgg tacacaaacg aaaggtatgt aaacattgat tgtattctaa ttgaaatggt       900
     gaattcgatg acaaagtacc gttatttgtt gtggcagata tgtaaactgg gaagagtcac       960
     ggtgtatctt agagatttaa aactgaatga aaatgcttgt cgttttaagt aaaaatatat      1020
     cagctgaatc cttatcaaat gcttattcca tccaaacgtt gagtatttct acatatggga      1080
     attatatgag gttactaatt attgattcag gatggattcc acacatcgca ttcgaccgtt      1140
     cgtcttcgta gcggataggt cgcagcttcc tacagcttgg cagaagtgga aacgtgaatt      1200
     ggaacgattt ttcgacgcgt gtggcattct ttctcaatgg gaaaaacgtt cacaaatgct      1260
     ccacctggct ggtccagagg tccaagaagt attcgatcat ttgccagggg tgaatgtatt      1320
     ccctctcgtc ctagccgatc ctccctacta tgatgtagcg attcaacgtc ttgatgaaca      1380
     tttcgaacca atgcgtagga ggaattatga acgtcatttg tttcgacaaa tcgttcaaaa      1440
     ggtagatgag aggtttgcgg attttattct acgtttacgc atacaagcga aacgctgtga      1500
     atttgaacga tacgatgctc gagaatatga tgatagaatc atcgagcaaa ttgtggaagg      1560
     atgcaagtct tctgagttac gtcgacaaat cttagtgaaa gatatgtctc tagaggagat      1620
     agtttctctc ggatcgacct tggcagatgt gcagcagcag gtgaaggaaa tagatcgagc      1680
     tcctgctgca gttgaactgg taggaactat gcgttagtta gataatatag gtttaattaa      1740
     ttaaattttc aacagaattt gaacaaggtt tccatgcgtt ctactactgg caatttcaat      1800
     ccaaaaagta gtcagtttaa acgagaattc aacaaatcgg tgaatggaac aagaggagct      1860
     tgctttgcat gcggtcagaa aggtcattgg aagggggatt ctttttgcag agcaaagact      1920
     gcaaaatgct tgaaatgcaa tggcataggt cattttgcga atcgttgttt aaagcgtcct      1980
     agtgatagtc agataaactt caaaccaaag agagttcgtt taatcgaaga agaatcagag      2040
     cagccagtaa acgaaatttt ctacgcgatg ggagacaaca cttttgagtt tgtggtaggt      2100
     ggagtaaaaa tcccaatgat catcgattcc ggagcggatg caaacgttat cacggaggaa      2160
     acatggatta aggtaaaggg cagaggaatt tcgattttgg agtataccgg agtagctgac      2220
     cgtaagctag tagcatacgc tactaatatg ccaatgaaca ttttgggaat gtttcgagcg      2280
     gttatacaag ctggcaaaaa tcaggtcgaa gctaagtttt acattgttaa gcaaggacaa      2340
     cggaatcttc tcggcgacaa gacagcaaaa caactggaag tgctcaaggt cggtttcaac      2400
     atcgcgtcag ttgctagtaa agagtcacca tgcttcccga aaatcaaagg tatcgtcgtg      2460
     gagatcccga tcaacgagtc tgttcaacca gttaaacagg cgtacaggcg agcaccgatc      2520
     gctttagagt cacagatata cgataaactg aaatcgttgc tggacaagga tgttattgag      2580
     aaggtacatg gtccgtcagc atgggtatcc ccgatggtgc ccattttgaa aagctcggga      2640
     gaagtaagat ctgcgtcgat atgcgtcgtg ctaatcaagc ggttcttcgt gaatcccacc      2700
     cacttccatt gattgaggaa attctgggaa gccttggagg tgccagtaag ttttctcgat      2760
     tggatataaa agaagcatac caccaattag aactgtcgaa gaaatctaga gaaataacta      2820
     ccttcattac aaagtacggc ttgttcaggt aattatttat tgtgtttaag aatttttttt      2880
     tggtcgatta tgaattagca taaaaatata catacttttc aaatcttatt tttgctttag      2940
     atacaagcga cttatgttcg gaatcagttg tgctcctgaa ctttttcaaa aggtaatgga      3000
     cacaattgta gctggtttgg aaggggtagt tgtatatttg gatgatatcc taatattcgg      3060
     ttcatcacaa aaagagcatg atgatcgatt agaagccctg atgaatcgac taaaggaata      3120
     tggggtgctc ctaaatctag ataaatgcct gtttaacgtt ggaaagttag atttcctggg      3180
     tcatgagctg tcacctgaag gaatcaaacc tattaaaagt cgggtgctgg caatccaaca      3240
     atttcgggaa ccagccaatg cggctgaact gagaagcttc cttggattgg tcacttatgt      3300
     gggacgtttt attcctcatt tagcgaccaa aactgatcca cttcgttttc tcttaagagc      3360
     tggaaacaat ttttcatgga ctgataaaca gaagcaagca ttcgaggaca taaaacaagc      3420
     aatctgtgaa ataagtcatc ttgggtattt taacactcaa gacaaaacca tattaattgc      3480
     cgacgcgagt ccatcaggac ttggcgccgt tttacttcag gaaaattcga caggtttgag      3540
     gagaattatc gcatacgcaa gtaaaacatt aacggatttg gagcgcaagt actctcagac      3600
     agaaaaagag gccctggccc tagtttgggc tgtcgatcgt ttcaaattgt atttacaagg      3660
     aacgcgtttc aagcttatta ctgattgcaa acctttacag tttttgttca gtcctcggtc      3720
     taagccgtgc gctcgtttgg aaagatggat actaagacta cagtcttata gctatgacat      3780
     agttcatgaa ccaggaagca ccaatctggc cgatgccata tctaggttat cacaagcaga      3840
     ccaatatcag tttgatgccg agaatgaaaa ctatgtgcaa tttttgactg aggtgtcctc      3900
     accggttgca gtgaagattg aagaaattaa tgagaaatca aaaactgatg aaataattcc      3960
     tgaagtaatt gaagcacttg accgggatac atggaccgat tgtgctaggc cattcaagcc      4020
     atatgccatg gagctttgcg tttcggggaa tgtactattg cgaggtgata ggatcgtcat      4080
     tccacgcact ctgcagggcc gaattttgga actcgctcat gaagggcatc ctggaatagt      4140
     cgtaatgaaa cgccggttaa gacaaaaagt ttggtggcct agtatggaca aggaagtgga      4200
     gaagtttgtc aaaaattgca gagaatgcac actagtgtca tctctttcag cacctgaacc      4260
     attagtacga acgcaaatgc cagataaacc ttggacacac attgctgtcg actttatggg      4320
     accactgcca tctggtcata acttgttagt gattgtggat tatttcagta ggttcattga      4380
     agtagttgtc atgcgagaaa tcacagcaaa actgacaata caagcacttc acgaaacgtt      4440
     ttgccggtac gggataccag agacaatgag aactgacaat ggtcctcaat ttgtcagcga      4500
     tgccatgatc caattcagca aagaatttgg aatcgttctc attaaatctt caccatactg      4560
     gcctcaggct aatggggaag tcgagagagc taatcgggca ctcaagaaac gtcttcaaat      4620
     tagccaagaa acaccgaacg cagactggaa gtgggatttg aggatgtatc tattgatgta      4680
     taactccaca cctcacacga caactggagt ggcaccatca gcattgatgt ttggaagagt      4740
     cctacgtgac aaactgcccg aactaccatc gatgggtagc aaattatatg aggaagtcaa      4800
     ggatcgcgat cgtgagaaga agctgaagga agctgactat gcaaatcatc gacgtcatgc      4860
     taaaccgaat caaataaaag ctggagatgt agtagttgct aagcgtatgt tgaaagaaaa      4920
     taagttgtca accaatttca gtccggagga attagaagtg ctttatcgca ctggctcaga      4980
     tgtcgcattg aagtcaagag aaaatggaag aattttacat cgaaacgttt ctcatttgaa      5040
     acatattgta ccgaaagaca acaggacaga tcaggcaaat aatttagaac tgcaagccga      5100
     ttcagagcag actagttcag gtttaaattg tcgagaaatt cacagtcagt gtcagaagct      5160
     ttagattcag gaaatgtatt agttagtcag cgacctcgac gggacttgaa gcgcccaagt      5220
     taccttgatg attataaact aaatgcagtt caaaatttgt gagaaaagga ggaat           5275
//
ID   Gypsy-486_AA-LTR repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-486_;
KW   Gypsy-486_AA-I; Gypsy-486_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-152
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-152
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3092-3092 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 152 BP; 40 A; 26 C; 32 G; 53 T; 1 other;
     tgttatatcg gtgacgggta cacgtcacct gaatttgaat tattgcaatt atttgaattt        60
     tcgaatcata gcagtcgagc gaataaattg gtcttcttgg attgtgttac amacgaagca       120
     gatgtgtttt actctctcgg tccgacatta ca                                     152
//
ID   Gypsy-487_AA-I repbase;    DNA;    INV; 5866 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-487_;
KW   Gypsy-487_AA-I; Gypsy-487_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5866
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5866
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3051-3051 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5866 BP; 1876 A; 1055 C; 1404 G; 1529 T; 2 other;
     ttttggcgac tcgaggaaat aatttggagt gagttttccg ggagtgcaaa ttcgaggttc        60
     cgggagtgca aattctaatt tagagtaaag gttctgcatt attttcggag gtgagttatt       120
     ttcttgatga aataatgccg tttgatgcca tcacacgagg aagaaaatgg cggagcgcat       180
     tggagtctct agagaagtgt aatggaagtg gatggattaa tctatagtat aaaagaaaaa       240
     taagcattta gaatggattc gcgatccgca gtggtgttat ggaaaacgat caactattag       300
     tgaaataaat ggaaattttg acctagaatg tgctatgaac ggaagccata ttcacaggag       360
     tggaaagcca cttgaaacgc ggaatgtatt ktagtgtatg tgagcattag catgggatct       420
     aaaagaagat ggtatactac agcacaattt attttgatag tgttgtgtga gtgtgataca       480
     accatgagac atggtcagcg gtacacgata aagagctgaa tatgaattcg tggtattgtg       540
     gtttatgtga ggctgtatgg ataaaaaaaa aaaataaaat aagctcaagg gggagtcggc       600
     tgtgttggat acgacgaatg tgatgcgttg caaataaaag tacacagtgt gtgtaggtat       660
     gtgaatggga aatggaaatg gaatggcaac ctgggtgtcg gctagttttt tttgtatgtg       720
     tgaattcatg gaaaatacgt tcaacgaggc atgtaataat ttgcaactgg gtgcaaagat       780
     gcggcaaccg tttgccttaa tgaaggttgt gtgtgtacca aaataattac cactattcga       840
     cagccactga tggcaatgga gaacaatgtg aaatgctcga cagtgctttg acgcatcaaa       900
     ggtatttgct tgtcaaggta ggttgcatgc atgggattaa aaaaaaaaat caataaaaca       960
     aaagaaaaag gatgtgataa caaatgtgta actagaatga attttgaatg catggcaact      1020
     gtgtgcccag ctatattcta cgaagagcct ctggatgaaa taacggcaac tgtttgcctg      1080
     agtgagttct gcaactgggt gcataaaaga atacatgata tcagtgtaac tgtatataaa      1140
     aattgtgaat tcaaattaga gcataataat tcgtggttgg aattgcggca actgtgtgcc      1200
     taaataatat ttgcaactgg gtgcaaagaa aaatacgtga tatttgtgaa catgtacaac      1260
     gaaaacgctg ttatgaaatt ttggcaactg tgtgcctaaa tgatttatgc aactgggtgc      1320
     aagaagacat acactaagcg aaacataagg atactattag atgcattcga acaaaatatt      1380
     cagctgcagc ggagtattat atctcaacac agcacagaca ccagcacata ttccaggtta      1440
     tatttgacgg ctcaggtaag caaccttttt tttaactatt ttgaacaaat gacaattcca      1500
     tttgtattag cgacgtgtac ttgctggtaa caaactacag gtaacaaaat agtaacacta      1560
     gtatacataa tattgtaatt aagagtggga cttgatattt atgtggcata atactcaaat      1620
     gagttcagtt catataatta aatgctttaa tatcaactat ggcaaaagtt tttgtggaaa      1680
     ataaggtgat ccatccattc cattcacttc ttatagtata atatagttga gtattgcaaa      1740
     attagtttta tcattgattt atacaggatg gattcgatgc gtcgcattcg gccgtttgag      1800
     atgtcggcag atagatctcg gctaccaacg gaatggcaaa aatggaaaag ggagttggag      1860
     agatacttcg acgcttgcgg ggttacatca cagtgggaaa aacgatcaca gttattgcat      1920
     ttggcgggtt cagaaattca agaaattttt gaccatctac ccggtgttga tcaaattccg      1980
     catgtggtgg cagatcctcc ttattacgag gtggccattc aaaaattaga tgaacatttt      2040
     gagccgatga gaagacgtaa ttacgagcgt catttgttca gacagattgt tcagaaacag      2100
     gatgagaggt ttgctgacta tgtattgaga ctacgcattc aagcgaagag atgcgaattt      2160
     gatcgtttcg atccaagaga gattgaggac cgcattatcg agcaaattgt ggaaacctgc      2220
     aaatcaaatg agcttcggcg gcaaatattg gcaaaagatc tggctcttga ggaaatcgtt      2280
     actctgggaa cgacgttggc tgatgttcag ctgcagatga gagaacttga tcgttcgcat      2340
     gttgagacca aacctgcaga gatggtgagc aaaatttcga agcgcccggt cccagaaaga      2400
     cagaggccaa attttactcc attcaagaca tacagcagat cctgttttgc gtgtggccgg      2460
     aagggacact taaaaggtga caatttctgc cgagcacgaa atgcaaaatg tctcaaatgt      2520
     ggtgaaattg gacatttcat aaaccgatgt ctaaaacgta ctagccgttt tgaaccggaa      2580
     gctactaaac cgaagcgaat cagacagatt gcagacacgt cggacaatca tgcagagctt      2640
     cagaaagatg attcgatttt ttatgcgatg ggcaagaacg tttttgattt tgttgtgggg      2700
     ggaataaaga ttccaatggt tatcgactcg ggcgcggatg ccaatattat tgaggagcaa      2760
     acttggaagc gtgtamggga agccggcata aaaattacta agatgtccca agacgttgat      2820
     cgtaaattgg ttgcctatgc cacagacaac ccaatgaaga tcaaaattat gttctgggct      2880
     gtcgtggaag cgggaccaaa ttcagtgaac gcaaaattct acgtcgtaga gggtggacaa      2940
     cagaacctac tcggcgatgc cacagcaaaa gcgctaaaag tcctaaaggt tggattcaac      3000
     atcggaacag taaatgcttc agttccaagc gttttcccaa agataaaagg catcattttg      3060
     gagattccca tcgacaaaac agtacagcca atccaacaag tataccgaag agctccgatt      3120
     gccttggaag aacgtatcca tgataaattg aagtacttgc tcgaaatgga tataattgaa      3180
     aaagtaagcg gtccgtctcc ctgggtttct ccagttgttc ctattctgaa gcaatctgga      3240
     gacttgaggc tctgtgtcga catgcgacaa gccaatcagg caatattgcg tgaaacgcac      3300
     ccgttgcctg tgatcgaaga gctgctttcg gatgtagaag gagcgttcaa attttcaaaa      3360
     ctggatgtga aagatgcgtt ccaccagctt gagttatcgg aagattccag agttatcacg      3420
     acgttcataa caaagtatgg actcttcagg taaagagttt ggtgtaattt tacagagaaa      3480
     agacgaataa atttatttga ttattgaaat attttctttg ttttcattaa atttcattta      3540
     actagataca agagattaat gttcgggatc agctgcgcgc cagagctgtt ccagaaagta      3600
     atggatacga tcgttgctgg attagatggc gtaatagttt acttagacga tgttgttgtt      3660
     tctggacgca ctcaagagga acatgattct cgcctgaaca aactcttgca gcggttccag      3720
     gaatatggtg tggttttaaa tagcgataaa tgtcaattca atgttgataa gcttgaattt      3780
     gtcggtcatg agttatccac aagcggtgtt aaaccaacag ctaatcgggt tcaggctgta      3840
     aatcagttca ggaaaccaaa caatgcatct gaactcagaa gcttcctggg tttggtaacc      3900
     tacgtaggaa gattcatacc gcatcttgca agtaaaacag attctctaag agcgcttctg      3960
     aaaaaagaga atagattcgt ttggtcagaa cagcaccaac aggctttcga tgaaatcaag      4020
     cgagctgtca gtgatatcaa acaattggga ttcttcaacg tgcgtgataa aaccatcctt      4080
     gttgcggatg caagtccatt cggacttggg gctgtattac tgcaggaaaa cgttcagggc      4140
     cgaagaagaa taatcgctta tgccagtaaa tctttgactc acctagaaag gaagtactgc      4200
     caaacagaga aggaggcttt ggcactggtc tgggcagttg atcgttttcg actttacctt      4260
     cagggtgcaa gattcacgct aatcacggac tgtaaaccat tgaaattttt gttcagccca      4320
     aaatctaagc cttgtgctcg aatagaacgc tgggttctac gacttcaatc gtacagctat      4380
     gatgttgtat atcaaccagg ggcaaccaac gttgcagacg tactatctag gctttctgaa      4440
     tcgagtccag agacgtacga tccggacaat gaatgctacg ttcagatgct gctcactctc      4500
     gcagcaccag cagctataac cgttcaggag attcaagaag acactagtaa agatgaagaa      4560
     attcaggaag tctacgaagc gttggaaact ggaatatggt ctgaaaaggc aaaaccattc      4620
     aaggcatatg caacagaatt atgtgtagcg tcgagcgtgc ttctgcgagg agaaagaatt      4680
     gtggtcccaa aatctttgcg aaacagaacg ttggaaatcg cgcatgaggg acatccggga      4740
     gtcgtggtaa tgaaaagacg tctaagacag aaggtatggt ggccgggtat ggatgcagaa      4800
     actgagcgtt ttgtcagaag ttgcaaagat tgtaccctag tatcctcccc agcggcacca      4860
     gaaccattgt taacaacaaa aattccagat aaaccttggg ttcatattgc agttgatttc      4920
     atgggcccat taccttcagg ccacaatctc ctagtcctga ttgactattt tagtaggttt      4980
     gttgaggtca tcattatgag ggagatttcg gctaaaaata cgatacaagc attgcacgaa      5040
     accttctgca gatacggaat tccggaatcc atcagatcag ataatggtcc ccaattcgta      5100
     agtgaatcgc tgcaaagttt ctgtaaggaa ttcggaattg aattgcgaaa gacgacgcca      5160
     tattggccac aggccaacgg tgaagtggaa cgggcgaaca ggtcactgaa aaagcggctg      5220
     cagatcagcc aggagtcatc caaggtagat tggaggtggg atctgcgtat gtacttgcta      5280
     atgtacaatt ccactcctca ttccaccacg ggagttgcac catcagcact catgttcggt      5340
     agggtgcttc gtgataaact tccagctttt ccaatgaatc cagcgaagac tattgaagag      5400
     atacaggaca cagatcgtga aaagaagtta aaaggagcgg agtacacgaa cataaggcgc      5460
     aaggctcgtc caagctcgtt gaaagaagga gacgttgttg tcgcgaaaag gatgacaaag      5520
     gataacaagc tttcgactaa cttcaatccc gaagaaatga taatccttaa gcgcaatgga      5580
     gcagacgcaa ccatacaatc gaaggctagt ggaaaaatat tccatcgtaa tgtatcgcat      5640
     ttaaagccaa tcatcccgag aaccgagata agagcagaac ttccaaatga agaaccatcg      5700
     acttcgcatc gcagccttga acaaagtgag cagcccgatg ataacaacag taacccgaat      5760
     gtaactatcg agccactatg tcgatcacgt cgtgaatcga agaaaccgaa atatcttgag      5820
     gattttcaac tgggtatagt tcaggactac cgagaaagtg gggaag                     5866
//
ID   Gypsy-487_AA-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-487_;
KW   Gypsy-487_AA-I; Gypsy-487_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-167
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-167
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3093-3093 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 167 BP; 55 A; 28 C; 41 G; 43 T; 0 other;
     tgtagtgtcg aagtagtaac agacgttaca agggaatact aaagaacaac agggcataca        60
     ttgtgtggtt ggatgtataa gcgagcgaaa taaagaaatc acttttgtat cgacgagcaa       120
     gtaagctaga cgcgtgttcc tcatttattg cgagttccga tcctaca                     167
//
ID   Gypsy-488_AA-I repbase;    DNA;    INV; 6693 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, a sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-488_;
KW   Gypsy-488_AA-I; Gypsy-488_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6693
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6693
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (12-APR-2019).
XX
CC   A rebuilt sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2827..5124,5143..5355,5359..6450)
FT                 /product="Gypsy-488_AA-I_2p"
FT                 /translation="MKKSDIEKTAFSVNYGKYEFVRMPFELKNAPAIFQRS
FT                 IDDVLRHHIGKRCFVYINDVIIFGRTLEEHLDNLRIVLQTLHEANLKVQLD
FT                 KSEFLHHSVEFLGYIITAEGIKPNESKIEAIKKYPEPKNLKQLRGFLGVMG
FT                 YYRRFIKDFAKIAEPLTKLLRGEGDSKSAKKIEFDIDQKTCFENMKQILSD
FT                 NDILTYPDYSKPFCLTKDASNFALGAVLSQGTYGNDRPIHFASKTLNKTEE
FT                 SYSATEKELLAIVWALKVFRGYLYGQKVKIFTDHQPLTYNLSPKNCNRKLM
FT                 NWRNFIEEHDYEIVYRPGKSNVVADALSRIQIHSLTPTQHSAEDDDSHYII
FT                 STEVPLNTFRHQIIIESTTTSPETTITNPFPGYRRILIRRTRFDDQILTSI
FT                 LKEFCDPSKTIGLYTSEEILGQLQEVCKKYFSRSGLLKIRFTQIILRDVTD
FT                 EEEREKIIRETHDRAHRGIQENKYQILREFYFPKITQHLKRYIRVCYTCNT
FT                 SKYDRRPLMIPIQETPIPNYPFKILHLDIFQIESNYFLSSIDKFSKYGRMI
FT                 PIKSRHGTHIGPAIWDTVTSFIIPNSLVMDNERAFQSPDIRGKLLDLNITV
FT                 YLTPNSKSEVNGAVERFHSTILELYRIQKQITPHLPPRNIIHIVVEKYNNS
FT                 IHSSTLRTPIEILLGKQRDPDRLVDPDTLEQIRNKTYDEIILRLKEAQYKQ
FT                 LKVANKDRKPAPEFRTGQAVYVKDKIIKPKHKAIFKKTYVQNSNEVTFRNE
FT                 DNSKLHKSNFKNLLNFVSRIPAALGSLRIQSLNQEHVAIVHLSHAKIIVGQ
FT                 SKIISRINTTMLEWAIHDIKTKLLTRNHKDPEINDLRWKIDELEVNLHQIK
FT                 PKHQRQKRWDSLGRAWKWMSGSPDADDLKLINSGLYKLTTNNNRQISINDD
FT                 LYDGLNNMKNTINDLIRENDRTFTFIQSSNNLLKIILNLDILNEEIIKIQN
FT                 SITLSKLGVINNRMLRPKETELINQILNDQGIPVDLLDQALGFASVAVGTD
FT                 GETILYIISIPNLSNPSYQHLKIVPIITDSLRIKLDGSEYIHGSGKLYLKT
FT                 DVCPRLGNWSLCSLSSLKDITLDSCLSNIIIGQDSRCTYETIEHFQSVIEM
FT                 SPTILLLNEVNDTLVNTCGISDRQLVGSFLITYQNCTVSIHNTSFSNQVIE
FT                 TVEHPIFSLSTGLNVTKQHIIQRTDIHLLRRLHHRNLEHLEN"
FT   CDS           join(688..927,906..1949,1883..2167,2136..2678)
FT                 /product="Gypsy-488_AA-I_1p"
FT                 /translation="MSNPVLPARLNHVIPDPKENTNQNQVSNPAQPRFAID
FT                 RTIGFEDRGKIPQIVRDLPEFTGNPRDLSQWILDVEDVNCSTTRCELFDDL
FT                 KNSFQYHLLIKTIRRKIKGEANDALFTSNAPTQWDSIKEVLKLYYADNRDL
FT                 MTLGNQLKSLNRHKHESLENYYSRVRELITLISSAVSMDDQWRGHEAILMR
FT                 LYNQIALDTFIRGLGDPLSRFCKNFRPQSLAQAYSYCVDYLNLDARNAPVN
FT                 IPSWQPIPTAAPRQFIAPNPSVKPPVPPRHHTAHINPLRMPPNPPPRHFPN
FT                 QNFSQQATARPNVFAPKRTFFQQQPRPEPMDTSTIRTQQVNYGNRPIAQRR
FT                 GPSDSMRAHDPTANRVAHTLEEYLDPAEYEKWYDEQLELSKEFFNDGECTL
FT                 ENLTIDEPSEDNISDTKEEANFLEDTEWVSKWFEHLRHQGRGQFFRGHRMG
FT                 LQMVRVKPKIRSLPYIEIPTSKGPIKMLIDCSANVNVISKKWALSSGILIE
FT                 NIHALNIRGVTGSEKVKQGQSFPTTFENKVNLFQPLLSENFKFLVFDFTEI
FT                 LFENRFNLITAEKILEVKCDSGKLKTIPLKFYTPVPTERQSVNKVEIPNIL
FT                 NKIRIAHLNDTERNLLIPILINLKEVFHDPDNRLTCTTNVECEIRTTDDVP
FT                 IYQKTYPYTMAYKAEVEKQIEKLLNDGIIRPSRSAWNSPVWVVPKKMDASG
FT                 EKKI"
XX
SQ   Sequence 6693 BP; 2349 A; 1437 C; 1185 G; 1722 T; 0 other;
     ggcgcccgaa gccgggacct ttcagtaatc gcataagtct caacggacga tgccaaccct        60
     agctgcctct aatgagaatt tggattccgg tcccagcacc atcattgatc aactcagtga       120
     cttgcggatc caaagcgcaa aaggttgcac tgataggaac cgacaacccg gaataaaagg       180
     attttcgagg actgaggcgt tgtcccacag cacaaggaat gtgcttcctc ttagtattac       240
     tgtaagttat aacacaacca gaaagaaata gtttaagtaa ttaacaaaac cataaacgcg       300
     atttcgtcta ctaataacac agtggcaagc ccggaccatc ctccagcgac ccactgtaat       360
     atcacagtta ggcgcaaaac taatccaaaa acaaaaccaa gttaaacccc aggagcggta       420
     gtgcgcttgg aaataattta ttaaaaaaca ttaaacgcgt atcgcttact aacagcacag       480
     cggcaagccc ggaccatccg taagcgaccc gctaaaatat cacagacagg cgcgatatcc       540
     caaatctgaa accaagaaat cataacttat tagggatcag tgaaaagtgt tagattaagc       600
     aagcctccca agtgacagtg ttaattttag gaagtgaagt gaaaaattga ccctctaatc       660
     gatttactca aaaatctaag gttgaccatg tccaatcccg tcctgccagc acggctcaat       720
     cacgtgatcc ccgatcctaa agaaaatact aatcaaaatc aggtgtcgaa tccagcccaa       780
     cctcggttcg ctatcgaccg aacgatcgga ttcgaggatc gcggtaaaat tccgcaaatt       840
     gtgagagatt tacccgaatt cactggtaac ccacgtgatc taagccagtg gatactggac       900
     gttgaagatg tgaactgttc gacgacctaa aaaatagttt tcaatatcac ctactgatta       960
     aaactatcag aagaaaaatt aagggagagg cgaacgatgc cctctttact agtaatgctc      1020
     ccacgcagtg ggatagcata aaagaagtct tgaaattgta ttacgctgat aaccgagatt      1080
     tgatgaccct cggtaatcag ctcaaatcac ttaatagaca caaacacgaa agtttagaaa      1140
     attattacag cagagtgcga gaactaataa cactaattag ttctgctgtt tctatggacg      1200
     accagtggcg cggtcatgaa gcaattttaa tgcggcttta taaccaaatt gcacttgaca      1260
     catttattcg tggacttgga gacccgctct ctagattctg taagaatttt aggccccaaa      1320
     gcttagcgca ggcttacagc tattgtgtgg attatctaaa tcttgatgct cgcaatgcac      1380
     cagtcaacat accttcatgg caacccattc ccactgcagc accaagacaa tttattgcac      1440
     ctaacccttc agtaaagcca ccagtcccgc cgcgtcatca tacggctcat attaaccccc      1500
     tgcgaatgcc accaaacccg ccaccacggc acttccctaa tcaaaatttc agtcaacaag      1560
     ccacagcgcg accgaatgtg ttcgccccaa aaagaacatt cttccaacaa caaccacgtc      1620
     ccgagccaat ggatactagt accattcgaa cccaacaagt gaattatggt aatagaccga      1680
     ttgcccagcg tagaggaccg agcgactcta tgagagctca cgatcctaca gctaatcgcg      1740
     ttgctcatac tttggaagaa tatttggatc ctgcagaata tgaaaaatgg tacgatgagc      1800
     agcttgagct tagtaaagaa ttttttaatg atggagagtg tacactcgaa aatttaacca      1860
     tcgacgaacc aagtgaagat aacatctcag acaccaagga agaggccaat tttttagagg      1920
     acaccgaatg ggtctccaaa tggttcgagt aaaaccaaaa atcagatctt taccgtacat      1980
     tgaaattccg acttcaaaag gaccaattaa aatgcttata gattgtagtg caaacgttaa      2040
     tgttatttca aaaaaatggg cactttcgtc aggtatcctg atagaaaata tacacgcact      2100
     gaatatacga ggagttaccg gcagtgaaaa agtgaaacaa ggtcaatctt ttccaaccac      2160
     ttttgagtga aaattttaaa ttcttagtgt ttgattttac ggaaattctt ttcgaaaata      2220
     ggttcaatct cataactgca gaaaaaatac tagaagtaaa atgtgattct ggaaaactta      2280
     aaactatccc tttaaaattt tacactcccg ttcctactga aaggcagtca gtcaacaagg      2340
     tggaaatacc aaatattcta aataaaatca gaattgctca tctcaacgat actgaacgga      2400
     acttgctgat tcctatatta attaatttaa aagaagtttt ccatgatcca gataatagat      2460
     taacctgcac aacaaacgtc gaatgcgaga ttagaacaac agatgatgta ccgatatacc      2520
     aaaaaacgta tccatatact atggcatata aggcagaagt cgaaaagcaa attgaaaaat      2580
     tgctgaatga tggtattata agaccatcta gatccgcctg gaattctcct gtttgggtag      2640
     ttcctaaaaa aatggacgct tcaggggaaa aaaaaattta gacttgtcat tgactaccgc      2700
     aaggtaaatg acaaaacaat ttccgacata tatcccaagc cagaaatttc gaatacgata      2760
     gactaactag gaggaaataa atattttaca acccttgatc ttgcatcagg gtttcatcag      2820
     ataaaaatga aaaaatcaga cattgaaaaa acggcatttt cagtcaatta cggtaagtac      2880
     gaatttgttc gtatgccatt tgaattgaaa aatgcaccgg ctatttttca gcgatctatt      2940
     gatgatgtgt tgaggcatca tattggaaaa cgttgttttg tttatataaa cgacgtaata      3000
     atttttggga gaacactcga agaacatctt gataatttga gaatcgtttt gcaaaccttg      3060
     catgaagcca accttaaagt ccaactagat aaatctgaat ttttacatca ttcggtagag      3120
     tttcttggct atatcataac tgccgaggga atcaagccaa atgagagtaa aattgaggca      3180
     atcaaaaagt atcctgaacc caaaaatttg aagcaactta gaggattttt aggagtaatg      3240
     ggttattatc ggcgatttat taaggatttc gccaaaatag ctgaaccctt aacaaagctt      3300
     ttaagagggg agggagactc caagagtgcc aagaaaattg agttcgacat tgaccaaaaa      3360
     acatgttttg aaaatatgaa acaaattttg tctgataatg atattttaac atatcctgat      3420
     tattcaaagc cattttgttt gactaaagac gcatctaact ttgcattagg cgctgtatta      3480
     agtcaaggaa cctatggaaa tgacagaccg atacatttcg catctaaaac tttgaataag      3540
     accgaggaat cgtatagtgc tactgaaaaa gaacttcttg ccatcgtttg ggcattgaag      3600
     gtttttagag gatatcttta tggacagaaa gttaaaattt ttaccgacca tcaacccctt      3660
     acttataatc tttctccgaa aaattgcaat cgaaaactca tgaattggcg aaatttcatt      3720
     gaagaacatg actatgaaat cgtatacaga cccggcaagt caaacgtggt agccgacgct      3780
     ttgagtcgta ttcaaatcca ttcgctaacg ccaactcagc attctgctga ggacgatgac      3840
     tctcactata tcatttcgac cgaagtacca ttaaacacct ttcgtcatca aataatcatc      3900
     gaaagcacaa ccacgagtcc agaaacaact attacaaatc catttcccgg ttatcgaaga      3960
     attttaatca gaagaacgag atttgatgat caaattttga cctcaattct aaaggagttt      4020
     tgtgacccaa gtaaaactat tggtttgtac acttctgagg aaattcttgg acaacttcag      4080
     gaagtttgca aaaaatattt cagtcgttct ggcctactga aaatccgatt cacccagatt      4140
     atattgcgtg atgttacaga cgaagaagag cgagaaaaaa tcattcgtga aacacacgat      4200
     agagctcatc gcggtatcca agaaaataaa tatcaaattt tgcgcgaatt ttattttcca      4260
     aaaatcacgc aacatttgaa gcgatatatt cgtgtatgtt atacttgtaa cacctcgaaa      4320
     tacgatcgac gaccattaat gattccaatc caggaaactc cgattccaaa ttaccccttc      4380
     aaaattctac accttgatat ctttcaaatc gagtccaact actttttatc tagcatcgat      4440
     aaatttagta agtatggacg catgattcct attaaatctc gccatggtac ccatataggt      4500
     ccagcgatat gggacacagt gacatccttt ataattccca actctcttgt aatggataac      4560
     gaacgagctt tccaatcacc cgacatcaga ggaaaactgc tcgatctgaa cattacggtg      4620
     taccttacac caaacagcaa atctgaagta aatggtgctg ttgagagatt tcattccact      4680
     atcctcgaac tttatagaat tcaaaaacaa ataacccccc atttaccacc tcgaaatatt      4740
     attcacatcg ttgttgaaaa atacaacaat tccattcatt catccacact ccgcactcct      4800
     atagaaatcc ttttaggaaa acaacgagac cccgatcgac ttgtagaccc agacacactt      4860
     gaacaaatac gcaacaagac atatgacgag attattctta gacttaagga agcccagtac      4920
     aaacaactta aagtagcgaa caaagacaga aaaccagccc ctgaatttcg aaccggacaa      4980
     gccgtatatg ttaaagacaa aattatcaag cccaaacata aagcaatatt caaaaagacc      5040
     tatgtacaaa atagtaatga agtaaccttt agaaatgaag ataattcaaa attgcataaa      5100
     tcgaatttta aaaatttact caactaattg tttaaccgtt aatttgtttc cagaataccg      5160
     gcagctctag ggagcctgcg tatacagagt ttaaaccagg aacacgtagc gattgtacat      5220
     ttatctcatg ctaaaatcat agtaggacaa tcgaaaatta tcagtagaat aaacacaaca      5280
     atgttggagt gggcaataca tgacattaag acgaaactac tcacacgcaa ccacaaagac      5340
     cccgaaataa acgactaact gagatggaaa atagacgaac ttgaagtaaa ccttcaccaa      5400
     attaaaccaa aacatcaacg acaaaaacga tgggactcac taggtagagc ttggaagtgg      5460
     atgtcgggct caccagacgc tgacgactta aagctcatta actccggact ttacaaattg      5520
     actacaaaca acaatagaca aatatctatt aatgatgacc tatacgatgg gctaaacaat      5580
     atgaaaaaca ctattaatga tttgattaga gaaaatgata ggacatttac atttattcaa      5640
     tctagcaata atcttttgaa aattattctc aatttagaca tcttgaatga agaaataatt      5700
     aagattcaga attctatcac actttcgaag ctaggagtaa ttaacaacag aatgcttaga      5760
     cctaaagaga cagagcttat taaccaaatt ctcaatgacc agggtatacc cgttgacctc      5820
     ttagaccaag cactcggttt cgcaagcgtc gccgtaggga cggatggcga aaccatactt      5880
     tacatcatca gcattccaaa ccttagcaac ccatcatatc aacacctcaa aattgtacca      5940
     ataataacgg attcactacg cataaaactg gatggttccg aatatattca tggcagcggt      6000
     aaactttatc tgaaaactga tgtttgtcct agactaggca actggagcct ctgcagcctc      6060
     agcagtttga aagacattac attagacagc tgcttatcga acataatcat cggccaagac      6120
     agcaggtgca cttacgaaac cattgagcac ttccagtcag taattgaaat gagccctacg      6180
     attctacttt taaacgaagt gaacgacact cttgtcaata cctgtggaat ttccgacaga      6240
     caactagtag gttcgttcct aatcacatac caaaattgca ccgtttcgat acataacacg      6300
     tcattctcaa accaagtcat agaaacagtc gaacacccca ttttctcact atcgactggc      6360
     ttgaatgtaa ccaagcaaca catcatacaa cgaacagata tccatttatt gaggagatta      6420
     caccacagaa acttggaaca tctggagaat tagatgctcg taacagtcac ccaccgttgg      6480
     acaataatcg gaggattctc atttacaacc gctatgattt tgttttttgc tatttacact      6540
     cttttaaggc ctagatcccg atcagctacc ggccaaatca acccagttaa accagaggag      6600
     tccacccatg agcattccgc caatccagtt tatcagccac cctcgctaag ggtataaccg      6660
     tcgaaccagg aggttcgaaa ttcagagggg agc                                   6693
//
ID   Gypsy-488_AA-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 25.10, Created)
DT   12-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-488_;
KW   Gypsy-488_AA-I; Gypsy-488_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-258
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-258
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3094-3094 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 258 BP; 72 A; 61 C; 63 G; 62 T; 0 other;
     agttagcacc aaaccacggt gctccaccac aaaggaaacg cgacccggtc agcggcaccg        60
     gtcagtgcac cgagtcgcga acgttgagtg cttaggccag cagaattagt acgtaggtcc       120
     aaagggtagt tgctaggtag aaccgatcgt gtgatcgata ttaattttct gtaggaataa       180
     agttagtctc tatcagaact ccgtccgagt aagtttggtc ttttttaaaa accccgaaac       240
     tccatctcgg atgtaact                                                     258
//
ID   Gypsy-489_AA-I repbase;    DNA;    INV; 4915 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-489_;
KW   Gypsy-489_AA-I; Gypsy-489_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4915
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4915
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3052-3052 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4915 BP; 1463 A; 954 C; 1047 G; 1451 T; 0 other;
     atttggcgcc caacgtgggg ctcgaggccg tgtcccggta gattttttta gaattctcac        60
     ccaattagtt tgtgttctgt ttagaagtaa ttattttgtg tattgtgtac aggatggagc       120
     agaataaccg atcaatcgat ggtttgataa acgatatgaa ctttgatgat tttgaagctg       180
     gtgccggtat acaccgaaat atgcgatatg tgccaccaac gaaatgggga attggatttg       240
     ataacgaata cggtagtttg accgtaaccg atttcatcga ttcggttgaa cggaaagctg       300
     cattatatcg cgtttcgcgt ttagagcttt atgagagctt cggtgaattg ctcggcggta       360
     atccgttaat ttggtatcgt gcatttaaag accggtttct cgcgtggtcg cctttgaaaa       420
     gggagtttat tcagcagttt acaaaggctg acaatgatta tttgatcgaa agacaattac       480
     aatcgcgaat acaacaacca ggagaaagtt tcgggatcta ttacgcttgc atggagttat       540
     tatttcagaa attgaacaga cgtaagactg acgaggtgaa gttagaatac ctaatcagga       600
     acctagacga tttttaccta aacagaatcc cagagtgtcg aattgaaacc gttgcggatt       660
     taggacgatt ttgtgagggt ctagaaagaa gtagggaaat tttaaggcgc aggaaaatga       720
     gtcagcttcc tctagctgag ccttctctac agggccgagc ttacgtggct aaaccccgtg       780
     taaatgaggt tagctttgat tctgccgtta atccattttc acaattcact cagaaccgaa       840
     tcgatcactc tgaacaaaat gtcgataggc aatccagaga ctcagaaaat tccccattgt       900
     ttcataaccg ccatgatatg tctattcctc gtttgtaatc tcaagcagct cctaattggg       960
     ctgttagttc tcagccttgc acaatgggct tttgttcaaa tcaaacaaac gtgcgatcgg      1020
     aattgaataa tttcgagact gctcattgtt caccggttga taagcaggcc agtattcgac      1080
     ctttgcgagt agaacaaaat gagactgcct attgttccca aattttcaat ccatctaaca      1140
     ataatgtctt ttgtgcacat ggttgtggat acaaacctga tcaggtagcc agatacgatc      1200
     cctatacatc atcgcagtta gcgtcacaga ctaggcctgt tgattggaat gtagtttcat      1260
     caccagtaca accatgccca ccatcggtgg taaacgaaga cccagatgta gctcaactct      1320
     ctcaatcgat ggcagattgt ttcgtgatta gacaatttgc tggtaaatgt tttaattgca      1380
     aaaatgctgg ccatcattgg cgtaactgcc aacaaccgaa gaagttcttt tgccatcgct      1440
     gtggttttga aggtaaaact ttacagtctt gccccaattg tacgggaaac cgtcaagcgg      1500
     aatcaaggca gtagagagac cgcttggttc cgcagtgctt ttgaatctct ccctgcccca      1560
     gatttcagaa attgtttatc agccacaaga caatcgtcca tacgcgagtg tagaagtttt      1620
     tggaaaacaa atgataggat tgttagattc gggtgcctcc atttcgattc taggcaatgg      1680
     gtgttacgat ttagcgaaac aattggacct ttgtttgttt caaattgatt cctcaatagc      1740
     tactgctgat ggatcagtcc atggcatttc acattgtgct tacgttccct acacattcaa      1800
     ggggaaaaca gagatcgttt tgacggttct ttcagaggct gttgctaatc ctcttgtgtt      1860
     aggtatcgac ttttggaact ctttcaagat cgctccggct acaatcagtg atatttgcac      1920
     tgttgaaact aaacatccgt ctggaaatga gcccaaaatc tactcctgca ctcctgaaca      1980
     acagctgaaa cttgatgcag ttataaaaga gtttctgcct tatactgaag ggaatttaac      2040
     gcgtacatca gttttagaac attttataga caccagtaat agtgacccga ttaagcaaaa      2100
     atactatcct gtttctccat acgtgcaaaa agagatagac aaagagttga accgtatgct      2160
     gaatttgggt gtgattcagc cttccaccag tccatggtct aacccaatag taacagttaa      2220
     aaaacccgac ggtagtgtgc gtttgtgctt agattcgcga aaattgaata acgttactaa      2280
     gaaagatgct tatcctttgc ctcatatcgc gggaatcctt ggttcggtac tcgatatgtt      2340
     tccaaaattg atcttaaaga tgcattttgg caaattccat tagagcgcag ttcacgtgaa      2400
     aaaacagctt tcaccgtgcc aggtcgtgga cttttcgaat ttgtcgtaat gcctttcggg      2460
     cttcataatg cgccccagac acaatgtcgt ctgatggaca aggtgctcgg agtagatctc      2520
     caaccctttg ctttcgtgta cttagatgac gtaattgtag ccacagatac tttcgaaaaa      2580
     cacatcgagg ttctccgaga gatcgcgaag agattgagag cagcacaact ttccattaac      2640
     gtgaataaat cgcagttctg tgctccagca gttaaatact taggtttcgt agtcgatcaa      2700
     gatggtattc gtacggatcc ggataaaatc aaagcaatag tcgattttcc gccaccgacg      2760
     tcggtaaaag aggttcggcg actcgtcggc ttggtaaatt ggtaccgtcg atttattcgg      2820
     gatttctcta cattgatcgc gcctatcaca gagcttctga aattgccgaa acgaaaattt      2880
     gtgtggagta acgaagctaa taaagctttt ctagagctta agagcgctct gtgctcagct      2940
     cctctcctct cgtgtccgaa ctacaatctc gaattttacg ttcaatgcga tgcttcggat      3000
     gtaggtgtag gggccgtttt ttggcaaaac cataccgatg gtgaaaaagt gatcgcatat      3060
     atgagtcaaa aactgtccgc cgcggagaga aagtatagta gcaccgaaag agaatgttta      3120
     gctgtattgt acgcagtaga aaaatttagg ctttatatcg atggtgttaa attcaccgta      3180
     attactgatc atgagtcact caaatggctt atgaatctca aagaccctgc tggtagactt      3240
     ggcagatggg ctttgaaatt acaaggatat aattatgaag tcgttcacag aaagggtaga      3300
     cacaatatcg tgccggacgc gttatctagg gctatcagtt gcgttatgga aatcagcgta      3360
     ggtgataaat accagacatg gtacaatgag ctgttcaagc tgattcagga ggatcccacg      3420
     caatcgcgag aatttcagat ccgcgatggt aagctctatc gttaccaaaa atcgaattta      3480
     ggattacttt acaattggaa gcttgttgtt ccgcctgatc aaaaattgga aatcttacgg      3540
     atgaaccatg atgaggtcgc acatttagca gtcactaaaa caatcaatcg catctcggaa      3600
     aattattttt ggaaggatat gcgtaacgag atcaaagaat acattcgatt atgttctgtt      3660
     tgtaaagcct caaagcccct aaacgtgagt tcgcgtgctc caatgggtca gcccaaagta      3720
     gcgaatcatc ctttccaagt tatatcaatg gatttcgttg gcgttttacc gctttccaaa      3780
     agtgggaaca ctgttttgtt tgtagtatca gattggtatt ctaaatttgt atttttacac      3840
     cccatgcgaa aagcagatac ctcccggatg tgtgatttca ttgagcgaca cattttcttg      3900
     aaatttggtg tcccgcagac cattatatct gacaatggga gtcaattcat tagtaaggaa      3960
     tttaaaaatt ttctactgaa atatggtgtc gaacatcaca agaacgctgt ttatcattcc      4020
     cagaacaatc ccgcagaatg cgtgaataag gtagtagttt cctcgattcg tgcctcgtta      4080
     ggagaaaacg catcgcacaa ggattgggat cgtaatattc ccatgataga atactccatt      4140
     aatacaagcg tacatgaatc cattaaactg tctccatatt ttgttctttt cggtcgaaac      4200
     cacatcaaat acggtaaaca ataccaagaa atgtctaccg agacatcaga tgattcggat      4260
     gaaatgagtg atcggtttca gatgttcaac aaaataaaag aaatcgttga acgagagcta      4320
     tcagcagcgt acaatcgtca aagtcattac tataataccc ggagtaaaaa tttaaccgta      4380
     tttcgagccg gtgatattgt ttggaaaaaa aattattgtc tatcaaaagc ttctgacaat      4440
     ttttgtgcaa aactagctcc tctgtttacg cagtgtcgtg ttatttgtag aactggtagt      4500
     aatacgtatg atttatcaga tatgcaagga aaattcttag ggaattattc gattcaggat      4560
     attcgcccca tttagttggt aattactata aaagtcttcg caaaaaaagg aagcaccaag      4620
     attatatctt tatatacttc gcttattaca tcattacgat ttgtatctgc tgtatgaagt      4680
     acatttaaag cagtgcactt aatgattgaa gtcttctaat tagaatagaa gcagatttgg      4740
     tttgaaagtc ttcgaaatct taaacggagc atttgtcaaa ttgtaaaagt ctccaaatgg      4800
     gagcacattt cggttccgat tagaattaag aaaaaaaaaa tgattatgaa ttttctcgtt      4860
     gaaaaaatta acttcaaaaa ttcatatatt ttttcttcct agaggaggaa ggtag           4915
//
ID   Gypsy-489_AA-LTR repbase;    DNA;    INV; 1198 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-489_;
KW   Gypsy-489_AA-I; Gypsy-489_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1198
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1198
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3095-3095 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1198 BP; 334 A; 243 C; 292 G; 329 T; 0 other;
     tgtaacgata attgttccaa gcactgtgcg caacatttgc ttgactctga ttggctcgtt        60
     gcttacaagt gttcctacca accagaaact attaagctag aaaagcctcc gcgcaattaa       120
     tataaataga ggctgcaaat acgcaaacca tgagtatttt gtgcaaaccc gtgacgaaga       180
     tcagttcgat ccagaagtct ccagccagag cagaaaaccc tacctgcgaa gccgaagtgg       240
     ttgtgtgtcc agcaaccgtg cgcaagctga ccagagacgc agttcgtcca gtcgaacgcc       300
     aaccagcctg cggagcagag cacaatcaag ccgacggcac cgaggtggat taattcgcta       360
     agggcctggt tttcaatctg taattttcat tgcaatgaaa ccagaagaag agttactgaa       420
     aaaaatattc ttatacagtt gccaccccac cggtgtccac cgatatttgg gcgcatttcg       480
     actgcatcgg atttgctcag ctgtattgca tgtggaggga gaagtgattt tgtgcacgtg       540
     tcgacaaccg acgtaagtca agctggaaaa aggaccaaaa atgtgtagta attgtgacct       600
     ctttaaacag tgcctaatcg cagtcggttt tattgcacga tttacgatcc gacttctaag       660
     cggctgacca gagcagagca tcgttggatg tggttgctga cggttcctgc ccagggcgga       720
     taggtggtcg gtgaaacaga taagtgaaaa tgcatgcatg aagaaatgaa aagccagtat       780
     ttgtgcacga actcttgatt ttcctggcaa atggtttgcg cgtagtatca gtatcaccta       840
     gtatgataag atcaaaattg tgaattagca ttacagttat ttttcgttaa aattggccaa       900
     tataagcaat agttaatgtg ggtgagaaca ctttcggtta atacagtagt ttttctcaag       960
     aagtgattgg attttgattt ttatgtgcga cggtgttttg agcaaatttc tctatagaat      1020
     cgagtgtggt cggacctacg actggccgac agctagcggg catcctaaag cgaaatttcg      1080
     gcaatccaac ttttggattg gcgcttaagc tgagattttt ccaacgagat ttttattgtt      1140
     tcgggcattc gttgttttgc tggaggtttt tgtggtccca ccgggaagaa acgttaca        1198
//
ID   Gypsy-48_AA-I repbase;    DNA;    INV; 4535 BP.
XX
AC   supercont1.113;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_AA_;
KW   Gypsy-48_AA-LTR; Gypsy-48_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4535
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.113; Positions 2191822 2187288.
XX
CC   Positions [1941-2474] - Reverse transcriptase
CC   Positions [3558-4034] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           712..1785
FT                 /product="Gypsy-48_AA-I_1p"
FT                 /translation="MERHIFWTLKPESGENLEKFMLKAREQAYKCNFGTSQ
FT                 QESRDICVIDKITLLAPPDLKEKLLQRDQPSLDDVFKIVASHQSVKYQASQ
FT                 MVVAGPSGLSQSVAAGDVNRMYASSSNRFSTECSRCGRKGHLGHDPICPAR
FT                 DKQCNVCKREGHFARKCKTPSAKSLAAQVKPPFREVSNRYGRQAPQRVRAI
FT                 PVQERDSKSDPEEVQSFIFAIGDGDEFIWLKVGGVMMQALIDSGCNKNIID
FT                 DGTWSRMKAQGVVIRNATKEVDHKFRGYGKDCKPMNVVGMFDATIEIISDD
FT                 QQSHSEARFYVIEDGNQPLLGKETARQLNVLRLGFPVQNDGVNQVCVLLVL
FT                 LSTYFINLQTIFFVL"
FT   CDS           2037..4520
FT                 /product="Gypsy-48_AA-I_2p"
FT                 /translation="MRMANRAIKREYHFMPTIDDFLPRLKSAKFFSRLDIK
FT                 EAFHQIELDESSRSITTFITHRGTYRYKRLMFGVSCAPEMFQKIIEQLLAD
FT                 CENCLSFIDDIVVFGADEAEHDRCLNKVLEVLKSRNVLLNMKKCFFKVNEL
FT                 DFLGHRLSGDGIKPAESKVEALKAFRTPKDVEELRSFLGLANYVGKFLPDL
FT                 GTVAAPLRSLTHNGVPFKWTEAQENAFQKLKNMISDVKHLKFFDTKLRTRV
FT                 VADASPVALGAVLLQFEHDHDDKDPRIICYASRSLTPTEQRYCQTEKEALA
FT                 LVWAVERFAVYLLGRRFELETDHKPLEAIFAPTSRPCSRIERWVLRLQSFT
FT                 YDVKYRKGSANIADSFSRLTDHHAVEQAYTENDEKFLILAILESTAIDISE
FT                 IESATINDRELTLVREALRSGIWNETEIKPFEAFQNELGFVGELVVRGNKM
FT                 VIPTSLRKRFLQLGHEGHPGESAMKRRLRDRVWWPGMDRDISKFVAVCEGC
FT                 RLVGLPQKPEPMRCRPLPSEAWTDVAIDFLGPLPSGEYLLVIIDYFSRYKE
FT                 VEIMRLITAKETADRLRRIFQRLGFPRTITLDNARQFLSSDFGIFCKENGI
FT                 FLNFTVPYWPQQNGEVERQNRSLLKRLQISCALKRDWKRDLEEYLMMYYST
FT                 PHSVTGRTPTELLMGRTIRTKIPSLKDIETAPLSEEFRDKDCSSKYRACER
FT                 ENATRKAAESGIKEGDKVLMQNLIPGNKLSTTYSPTQYEVVKKAGTRVTIQ
FT                 NEESGKIYERSSAHLKKIADHLEEPTLPTENDSLPQVSHQTTPSTALAGDE
FT                 ESRPKRACRRPARLEDYVVNDDSSVL"
XX
SQ   Sequence 4535 BP; 1343 A; 890 C; 1118 G; 1184 T; 0 other;
     acagtggcga cgaggaagga attggaattt cgcgagaaat ctttattttt ttttccgatt        60
     attaccgttt gttttgcgga actcgagtga ggttaatttc agctgcctgc agtggtgagg       120
     taagcattat tttgtttgtt tttctttcgg gccctattgg aaaggaagag tgtaggcggt       180
     atatatgccg aaggcttaaa tgccggataa cagtggctgg aaagccgttg gcttaaatgc       240
     cggataacag tggcttgaaa gccgttggct taaatgccgg aaaacagtgg cttaaatgcc       300
     ggaaaatagt ggctttaatg ccgtgtactg atgattctga ccatataggg ctcgaaagcc       360
     atgataacat tatgttacga tacatgatta cattgtttca tgtgatctta taggataatg       420
     gatagatggg atatcctgcc gtttttgttc aaatcgctgc cccagaatga aatcaggggc       480
     caatggacga aatggaagag gaatttcgag tacatcgtag ctgctagtga agagaccaat       540
     aagacgaaac ttaaattctt tctgctggcc aaagcgggcc ctgatgttta ggaaattttc       600
     caagtgattc ctggagctga cgtcgtggaa gatgcggaaa agacgattga tccgttctgt       660
     gttgcgcttg ccaaacttga cgagtacttc gctccaaaac atcacgagtc aatggagaga       720
     catatttttt ggacgctgaa gccagaaagc ggtgagaatt tggaaaagtt catgctaaaa       780
     gcacgagaac aggcttataa atgcaatttc ggtacgtccc agcaagaaag tcgcgatatt       840
     tgcgtgattg ataaaatcac gcttctggcg cctcccgatc ttaaagaaaa gctgctccag       900
     cgagaccaac cgtctctgga tgatgtgttc aaaattgtag cgtcgcacca gtccgttaaa       960
     taccaagcta gtcaaatggt cgttgctggt ccttccgggc tgtcgcagtc agttgctgca      1020
     ggtgatgtaa accgtatgta tgcatcgtcg tcgaatcgat tttctactga atgctctcga      1080
     tgtggccgga aggggcattt gggacatgat ccaatttgtc ccgctcgcga taagcaatgt      1140
     aatgtttgca aacgagaagg acatttcgcc cggaaatgta agacacccag tgccaagagt      1200
     ttggccgcac aggtcaaacc accgtttcgt gaagtgagta atcgatacgg aagacaagct      1260
     ccacagcgtg tccgggcaat accggtgcag gaacgtgact ctaaatcaga tccggaagaa      1320
     gttcaaagtt tcatatttgc aatcggcgac ggcgatgagt tcatttggtt gaaggtcggt      1380
     ggagtgatga tgcaagcgct gattgattcg ggatgcaaca aaaacatcat tgacgatgga      1440
     acctggagcc gtatgaaagc tcaaggggta gtcattcgga acgcaacaaa ggaagtggac      1500
     cacaaatttc gaggatatgg aaaagactgt aaaccgatga atgtagtagg tatgttcgat      1560
     gccacaatcg aaattatcag tgatgaccag cagtctcaca gcgaagctcg attctacgtt      1620
     attgaagacg gaaatcagcc cttgctcggt aaagaaacgg ctcgacaact gaatgttttg      1680
     cgattgggat ttccagtcca aaatgatggc gtgaatcagg tatgtgtatt gttggtgtta      1740
     ttaagtacgt attttattaa tttgcaaact attttttttg tactataaag atcaaaaata      1800
     ccacatcgtt cccaaaagtt aaaggggtaa agcttcgcat cccgattgac acttcggtaa      1860
     ccccggtggc tcaacatgcc agacggccgc cgatcgcttt acttggaaga attgaggaaa      1920
     aactagatca acttgaagcg gccgatataa tcgaaaaagt aagccattac agcgattggt      1980
     tgtcaccgct agtagttctt gtgaaggaca acggggatct cagaatttgt gtggatatga      2040
     ggatggcgaa cagggcgatc aaacgcgaat atcatttcat gccaacaatt gatgactttc      2100
     tgcctcgatt gaaatctgcg aaattcttct ccagattaga tataaaagag gcatttcatc      2160
     aaattgaact agatgagtca tcgcgttcaa ttaccacgtt tattactcat cgtggtacat      2220
     atagatataa acgtctgatg ttcggggtgt cctgtgcccc tgaaatgttt cagaaaatta      2280
     tcgaacaact acttgcggac tgtgaaaact gcctcagctt tatcgatgat atagttgtat      2340
     tcggtgctga tgaagcggag catgatcgat gtctgaacaa agtacttgaa gttttgaaaa      2400
     gccggaatgt attgctcaac atgaagaaat gtttcttcaa ggtcaatgag cttgatttct      2460
     tgggtcatcg tctgtctggt gatggaatta aacctgcaga gagtaaagtt gaggcgctta      2520
     aagctttccg aactccaaag gatgtagaag aactcaggag ttttttaggg ttagcgaact      2580
     atgtgggaaa attcctgcct gatttaggaa cggttgccgc tcccctacgt tcgttaacgc      2640
     ataatggagt accattcaaa tggaccgaag cccaagaaaa tgcatttcaa aaacttaaaa      2700
     acatgatcag tgacgttaag catttgaaat tcttcgatac aaaactgcga accagagttg      2760
     tggcagatgc ttcgccagtt gcacttgggg cagtactttt gcagtttgag catgaccacg      2820
     acgacaaaga tccccgtatc atttgctatg ccagcagaag tttgacgccc acagagcaac      2880
     ggtactgcca aactgaaaaa gaagctctgg cgctagtttg ggcagtggaa cgttttgctg      2940
     tgtatttact gggacgccgc ttcgaactcg aaactgatca taagccgctt gaagcaatat      3000
     tcgctccaac gtcaagacca tgttcgcgca tcgaaagatg ggtcttacga ctacagtcgt      3060
     tcacatatga tgttaagtat cgcaagggat cagccaatat agcagattcg ttctccaggt      3120
     taactgatca tcatgctgtt gaacaagcat acactgaaaa cgatgagaag ttccttatcc      3180
     ttgctattct ggaatctact gctattgata ttagcgagat cgaaagcgca acaatcaatg      3240
     atcgagagtt gactttggtc agagaagccc ttcgtagtgg gatttggaat gagactgaga      3300
     taaaaccatt tgaagcgttt caaaatgagc ttggatttgt tggggagcta gtggtgagag      3360
     ggaataaaat ggtaattccg acaagtttgc gtaaaagatt tctacaactc ggacatgaag      3420
     gacacccagg agagtcagca atgaaaagga ggcttcgaga tagagtttgg tggcctggaa      3480
     tggatagaga tatctcgaaa ttcgttgctg tttgtgaagg ttgccgttta gttggtttgc      3540
     cccaaaaacc tgaaccgatg cgctgcagac cgttaccatc agaagcttgg acagacgtgg      3600
     ccatcgactt cctgggtcca ttaccaagtg gtgaatactt gttggtcatt attgactatt      3660
     ttagccgcta caaagaggtt gagataatgc gactcataac agctaaagaa actgctgacc      3720
     gacttcgacg aattttccaa cgattaggat tccctcgtac tattacactc gacaatgcaa      3780
     gacagttttt gagttccgat tttggaattt tttgtaaaga aaatgggatt ttcctcaact      3840
     ttaccgttcc atactggccg caacaaaatg gggaagtaga gaggcagaat cgatcattgc      3900
     tgaaacgtct ccagattagc tgtgccctta agagagactg gaaacgagac ttagaagaat      3960
     accttatgat gtattactcc accccgcatt cggtaaccgg aagaactcct accgaactat      4020
     taatgggtcg gacgataaga accaagatac catcgttgaa agatattgag actgcaccac      4080
     ttagcgagga gtttagggac aaagattgct cttccaagta cagagcatgc gaaagggaga      4140
     atgctactag gaaggctgca gaatcaggaa ttaaggaagg agataaggtt ctaatgcaaa      4200
     atttgattcc tgggaacaag ctgtctacaa cctacagtcc aacgcaatac gaggtggtca      4260
     agaaagctgg aaccagagta accattcaaa atgaagagtc gggcaaaatc tatgagcgca      4320
     gttcagctca cttaaagaag atagcggatc atttagagga accaactcta ccaaccgaaa      4380
     atgattctct tccacaggta tctcatcaga caactccgtc tacggctcta gctggagatg      4440
     aggaatcgcg gccaaaacgc gcctgccgtc gtccggctag actggaagat tatgtggtta      4500
     acgatgactc ttcggtgctt tgaaaaaagg ggaga                                 4535
//
ID   Gypsy-48_AA-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   supercont1.113;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_AA_;
KW   Gypsy-48_AA-I; Gypsy-48_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.113; Positions 2187287 2187089.
XX
SQ   Sequence 199 BP; 71 A; 38 C; 28 G; 62 T; 0 other;
     tgttgtaccc tttgtgcatt tcccaccgtg caactgatta ttcctactcg ggtattcatt        60
     aatgtcataa caaaaataaa cacaacctga accagtgtga ttgattctgg aagctaactt       120
     ttaacttgat taataaagta ctttaaaaga gtaaagttta atacaaataa ctattgcgaa       180
     taatccgaac cagatcaca                                                    199
//
ID   Gypsy-48_AnFu-I repbase;    DNA;    INV; 5811 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5811
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2932-2932 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1262..2248
FT                 /product="Gypsy-48_AnFu-I_1p"
FT                 /translation="MYGARFTHSLHVPRMPARTRGRPKGSGSNKMAEKLDL
FT                 SLALKLVKPFSGNSTELSSFIESVELLKDYSEKVEEAQILRLMKVTLTGAA
FT                 HGAIDGATTLKEAFTLLKTRFGVKISPNAVENEMKSSKQAEKSITDFGAEI
FT                 EALSTKLAAAHVSLGTFSTEAAASNVVQPIAVRAFINGLTNATTRFFLKAR
FT                 NPTSMTKAISDALECDDTEPESTADCAFLNPYYQQGILNRYPRYTYRRPQY
FT                 NRGQTYYRGYYTRGNKPNRGYYPQNQRVRGQNRPPQSRENFHRNNSTLRFS
FT                 DRNNANLAVLPQEQEQDNESSEVAENEETSLLTDLFR"
FT   CDS           2235..5741
FT                 /product="Gypsy-48_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LIFFVSYSLNSNTKADFFLFNNPVKLIIDSGASCCIL
FT                 NSKIVPRHITINTSLQLSVRGISGFTKTRGFVDTIIIYESIQFPIRFHVLD
FT                 NLPALGLIGTNFLKRFGAKLDFKKETLIFQTIPNYNRTINIPPRTEIITYI
FT                 NTSEVDTCVVWNEEIIPQVFISNTIAKPTNGKIPIKIMNLKNKPVQVTNFN
FT                 PTIKPASNYSILCINTPKYHSDHGTQTLNELNLNHLSKEDKQTIQNICLKF
FT                 NDIFCLENDSLSTTKLHSASLHLKETINPLYTKQYRLPQYQKPEVEKQVRQ
FT                 MLKEKVIEPSTSEWNSPILLVPKKSSNDKKKWRLVVDYRKINAILQDDKFP
FT                 LPNIEEIIDSLSGAKYFTHLDLSQGYYQCELKPEDRPITSFTTPSGQYQMT
FT                 RLPMGLKVSPSIFSRLMTVAMSGLNIEKCLVYLDDIIVHGKTMSEHNQNLM
FT                 RVFERLRKVNLKLNPTKCNFLQKELVYLGHLISAEGIKPDPAKIDCIKNWA
FT                 IPSTADEVKRFIAFANYYRKHIPNFAKRCIPLNKLTRKEVKFEWSDECQRA
FT                 FDTLKDKFINPPVLDFPDFSDKNTFTLHTDASGYAIGAVLSNENGKPVAYA
FT                 SRALNKAEQNYGTIDKELLAIVWATKHFRPYLYGKPFNLYTDHRPLVFLFS
FT                 LTDPSSRLTKFRLALEEYNFTIMYKKGKDNVVADALSRLTSSDLKSLNHNI
FT                 FQVMTRSKAKALSYKDDIKKNTIDNGNESTSTVYLELKIDPKAKKLIISNE
FT                 EIIFPSIMSTTYLRGVMTKVKEHEKNIKKSICLITNENEKVIKDLLNRMKF
FT                 LSMNGLPRIVQINKNVKIIDERDVGKKKLIMNDHHVLPTAGHAGIQKTLHT
FT                 IKQKYTWKGIDSDVKQMIKTCPHCQYFKQNNNPKIPMKVTETASKPMQKLY
FT                 LDLVGPLVNSEGCEYVLTTQCDFTKFITATPIKNKKTETVAKAFTENVILR
FT                 YGIPETICTDRGKEFMSELFNKICKMLQIKKLNSTAYHHQSIGSLENSHKM
FT                 LGNFLRIYCDKNPLSWIQWIRFYEFAFNNTVHMSTNHTPFYLLYGRHPNVP
FT                 SNLIEETRERISDDMDSYTEFVKARLRIAHNIVKERLANRKQINKRIYDMN
FT                 SKIKTFQIGDKILLKNEVGKKLDTKYTGPYEITKDSDENVEIKVGNKTEIV
FT                 HKNRIKQFHE"
XX
SQ   Sequence 5811 BP; 2192 A; 1023 C; 1038 G; 1558 T; 0 other;
     tggcgatcct gccagttttt accacgtgcc attagaaaaa aaaaatcatc gggccagcaa        60
     taagaaaaaa aaaaaaagta aaatccagtc atcgacgtgc gacaacccgc tacaagtgtc       120
     tcgatatcga taaaccaaaa atatatcaac ccgacacaac catctcggaa ccttggctga       180
     caagccttct ggccgttgag ctgttagtgc ctattgtacc ctgatcctga atgctagaat       240
     cctgatcctg aataatcatc gaacaacttc agcggctttg tgaagcacgg agtgcagcgc       300
     gtagaggaac tacaaccacg ctacaatatt ttacacaaca acatcctacg tcatcaagcg       360
     gagtgcagcg cgtacaaatc tacaactaca actgaaaata caactacgcg gctgtttgct       420
     gatcacccgt ttatctgtat cggtcctgga ggcaaagaca acgagcgcgg agagcaactg       480
     aagaggacca tcaacacact gcaagacact acatgcggat acggttgatg taagtacgcg       540
     aaaaattgga tatgatacct aaatactaat caatgctgcg tgttgtaaac ggttgttgtg       600
     cgcgtatata cgaaagtgaa atttgcaaag tgtgaggtta ggcatggact cgtaggaacg       660
     cataacacgt gctaacatat cgtaccaaaa cacactacct gtactatctg gtgtgcgcga       720
     attagtgaaa ccgacgattg tgatggtgaa atgtgaggtt aagagtttac agaatgttag       780
     gttaggcgtt atataaggac gttattgaat tcacatccat aaaaatattc gacctaccaa       840
     aaaaaaaaaa aaaaaaagta aagtgtaagg gtaaagtgtt tgcttattac gattttcttg       900
     agatcgcttt gtgtggttcg ggtgtgctcg caaatatctg attgaataac gggaaaaatg       960
     aattttcgca ttacaaaaat agctcatagg taaaaaaaaa aaaaaaaaaa aaaaaaatcg      1020
     tgcgtagaaa atgcggctaa tttttttatt attttttttg catctacatc tattctaatc      1080
     tgataacggc tgtaaggaaa aaaaaagaaa agaaaaaaaa agttaatagc ggatttctat      1140
     ttcatacatc tttttcatct tatcgttacg tttgtagtat tactatcata aatttaattt      1200
     ttgcaaactt tatttttcat gccggtacac cattacgttt atctcataat attacacacg      1260
     tatgtacggt gcgcgtttta ctcattcgtt gcatgtacct cgcatgcccg caagaactcg      1320
     tggtagacca aaaggaagtg gaagtaacaa aatggcggaa aagttggatt taagcttagc      1380
     tctgaagcta gtaaaacctt tttcaggaaa ttcaacggag ttatcaagct tcatagaaag      1440
     tgttgaattg ttaaaggact attcagaaaa agtggaagaa gcccaaattt taaggttaat      1500
     gaaggtcacg ctaaccggag ccgcacatgg cgctattgac ggtgccacta ctttgaaaga      1560
     agcttttacg cttttaaaga caagatttgg agtgaaaatt tcaccaaatg cggtcgaaaa      1620
     tgagatgaag tcctcaaagc aggcagaaaa atcaattact gattttggag ccgaaatcga      1680
     ggctctttcg accaaactag cggcagcgca tgtgtcattg ggaactttct caaccgaagc      1740
     agctgcatct aatgtggtac aacccatagc cgtgcgagcg ttcattaacg ggctgactaa      1800
     tgcaaccact cggttttttt taaaggcccg aaatcccacg tccatgacaa aagcaatttc      1860
     agatgcactt gaatgtgacg atacagaacc agaatccact gctgattgtg catttttaaa      1920
     cccatattat cagcaaggga tactaaatcg gtatccgcgt tacacatatc gacgtcccca      1980
     atacaaccga ggtcaaactt attatagggg ttactataca cgaggaaaca aaccgaacag      2040
     aggatattat ccacaaaacc aaagagtacg tggtcaaaat cggcctccgc aaagcaggga      2100
     aaacttccat aggaacaatt caactttgag attttcggat aggaataatg caaatttagc      2160
     agtgttgcca caggaacagg aacaagataa tgaatcaagt gaagttgcgg aaaatgaaga      2220
     aacttctcta ctgactgatc tttttcgtta gttacagttt aaacagtaac acaaaagcag      2280
     attttttttt attcaataat cctgtaaagt tgataataga tagcggagca tcatgctgca      2340
     tattaaactc aaaaattgtt cctcgccata taacaataaa tactagcctc caactctctg      2400
     tacgaggaat aagtggtttc accaaaacca gaggatttgt cgacactatt atcatttatg      2460
     aatctattca attccctatt agatttcacg tgttagacaa tttacctgca cttggattaa      2520
     ttggcacaaa ttttttgaaa aggtttggag ccaaattaga ttttaaaaag gaaacattga      2580
     tttttcaaac cattcctaat tataatagaa ctattaacat accgcctcga acagagatta      2640
     ttacatatat taacacttct gaagttgata cctgtgttgt ttggaatgaa gaaattattc      2700
     ctcaagtttt tatatcgaat acaatagcaa aaccaacaaa tggaaaaatt cctattaaaa      2760
     ttatgaattt gaaaaataaa cctgtccaag taactaattt caatcccact ataaaaccag      2820
     catcaaatta ttcaatactt tgcatcaaca cacctaaata tcattctgat cacggaactc      2880
     aaactttaaa cgaattaaac ttaaatcatt tatcaaagga ggacaaacaa accattcaaa      2940
     atatttgtct aaaattcaat gatatctttt gtttagaaaa cgattctcta agtacaacta      3000
     aactacatag tgcttcatta catttaaaag aaactattaa tcctttatat accaaacaat      3060
     atagattacc gcaatatcag aaaccagagg tggaaaaaca agtcaggcaa atgcttaaag      3120
     aaaaggttat cgaaccaagc acatcggaat ggaatagccc tattttattg gtgccaaaaa      3180
     agtcctctaa tgacaaaaag aaatggcgtt tagtagttga ctacagaaaa atcaatgcaa      3240
     tacttcagga cgataagttt ccattgccaa atatcgaaga aattatagat tctttaagtg      3300
     gtgctaaata ttttactcat ttagacctat cgcagggcta ttatcagtgt gaactgaaac      3360
     ctgaagatag accaataacg tcgttcacta ccccatcagg tcaatatcag atgacccgtc      3420
     tgccaatggg tttaaaagtc agcccgtcaa ttttttctag attaatgaca gtggcaatgt      3480
     cgggattgaa tattgaaaag tgtttagtgt atttagatga cattattgta catggaaaaa      3540
     ctatgagtga gcataaccaa aatttaatga gagtattcga acgtttgagg aaagttaatt      3600
     taaaactaaa cccaaccaaa tgcaatttcc ttcaaaagga attggtttat ttaggtcatc      3660
     taatttcagc tgagggtatt aagcctgacc cagcaaaaat agattgcata aaaaattggg      3720
     cgatcccatc aacagcagac gaagttaaaa gatttatcgc atttgcgaat tattatagga      3780
     aacatattcc taattttgct aaacgttgca ttcctttaaa taaattaact agaaaggaag      3840
     ttaagttcga atggtcagac gaatgccaga gagcatttga tacacttaaa gacaaattta      3900
     ttaatccccc tgtgctagat tttccagatt ttagcgacaa aaacacattt accttacaca      3960
     cagatgcctc aggatacgct attggtgcag tgttgagcaa cgaaaatgga aaaccagttg      4020
     catatgccag tcgcgcttta aataaagccg agcagaacta tgggacgatt gataaggaac      4080
     ttttggccat tgtctgggca acaaaacatt tccggccata tctatatgga aaaccattca      4140
     atctatacac agatcacaga cctttagtat ttctcttttc tttgaccgac ccatcaagtc      4200
     ggctaacaaa gttccgatta gcactagagg agtataactt cacgattatg tataaaaaag      4260
     gcaaggataa cgtagttgct gatgcactat ccaggctaac tagctcagat ctaaaaagct      4320
     taaatcataa cattttccaa gtaatgacgc gttcgaaagc taaagctcta tcctataagg      4380
     atgatataaa aaaaaacaca attgataatg gtaatgaaag cacaagtacg gtttatttgg      4440
     agcttaaaat tgatcccaaa gctaaaaaat taattatttc aaatgaagaa atcattttcc      4500
     cttctatcat gagcacaact tacttacgag gagttatgac aaaggtaaag gaacatgaga      4560
     aaaatataaa aaaatctata tgcctaatca cgaacgaaaa tgaaaaagtt ataaaagatt      4620
     tattaaatag aatgaaattt ttaagtatga acgggttacc aaggatagtc caaataaaca      4680
     aaaatgtaaa gataatagat gaaagagatg ttggaaaaaa gaaattaata atgaacgacc      4740
     accacgtact acctacagca ggacatgcgg gaatccaaaa aacgctacac actataaaac      4800
     agaaatacac atggaaagga atagatagcg atgtaaaaca aatgattaaa acttgcccac      4860
     attgtcaata ttttaaacaa aacaataatc caaaaatacc aatgaaagta acagaaaccg      4920
     catcaaaacc catgcaaaaa ctatatctgg atttagtagg accgttggtt aactcggagg      4980
     gatgtgagta cgtattgacc actcagtgtg attttacgaa attcattact gcaacaccga      5040
     taaagaacaa gaagacagaa acagtagcaa aagcttttac ggaaaatgta atattgcgat      5100
     atggaatacc agaaacaatt tgtacagata ggggaaaaga attcatgtcg gaattattca      5160
     acaaaatatg caaaatgtta caaattaaaa aattaaactc tacggcttac catcaccaat      5220
     caataggttc gttagaaaat tcacacaaaa tgctagggaa ttttttaaga atctattgcg      5280
     acaaaaatcc tctatcttgg atacagtgga ttagatttta tgaatttgcg tttaacaaca      5340
     cggtacatat gtctaccaat catactccat tttatctgct atatggccga catcctaatg      5400
     taccatcaaa tttgatagaa gaaactagag agcgtatatc cgacgatatg gatagttata      5460
     cagaatttgt aaaagctaga ctaaggatag cacataatat agtaaaagaa agattagcta      5520
     ataggaaaca aatcaacaaa agaatttacg atatgaactc aaaaataaaa acatttcaaa      5580
     taggagataa gatattgtta aaaaatgaag tggggaaaaa actagatact aaatacaccg      5640
     gcccatacga aataacaaag gatagtgatg aaaacgtaga aataaaagta ggaaacaaaa      5700
     cagaaatagt acataaaaat agaattaaac aatttcatga ataatttttt tattaaggaa      5760
     gggcgtgtag cgtgcaaagc aagataaaaa attttttgtt aaggaagggc g               5811
//
ID   Gypsy-48_AnFu-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-177
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2860-2860 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 177 BP; 61 A; 29 C; 36 G; 51 T; 0 other;
     tgtagtgtag actcgcatta agcggaatat cgttacgtta agtttcgtta agttaagttt        60
     agttaagtta gattcgttaa gttaggtagc aagtataaaa taaagaataa acttccgggc       120
     agcctctttg gccgttcaac agcgaaccta aacggaacac ataaagtaca cattaca          177
//
ID   Gypsy-48_CQ-I repbase;    DNA;    INV; 5708 BP.
XX
AC   AAWU01034932;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_CQ_;
KW   Gypsy-48_CQ-LTR; Gypsy-48_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5708
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 475-475 (2011).
XX
DR   Genome; AAWU01034932; Positions    8766   14473.
XX
CC   Positions [4704-5165] - Integrase core
CC   'GCTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1422..3398
FT                 /product="Gypsy-48_CQ-I_2p"
FT                 /translation="MMDDIYVPPVSTAETGSAAPPGSTAPPASPAVLFSPA
FT                 SYNLPQFKFRHLPTSEVSNAWIQWIRWFENIMIASGISNSDARKAQMLAMG
FT                 GIELQGVFYGLPGAEEWGSNAYGAAKQKLTDHFSPKQHDSFERFQFWSMKM
FT                 ENDEPIEKFLLRVQQKAEKCVFGKTELECRQYAIVDKIIQNAPEDLRRKLL
FT                 EKDALTLDTTVKIVNAHQAVKYQAAQMKPMANQQVEVHRMVVKDKGPKDAD
FT                 SSDTGSCSRCGYPSHRSGQRCPALDQKCRGCHQFGHFWVMCSHRKRKSNFN
FT                 QVDRKYNNQKRYRTVRNIATEPSHETEEYPVNLIHDDDKDEYITCRVGGVE
FT                 IPMLIDSGSTHNLIDDATWEMMKLEDVTVHSERFDNSKRFLAYGRVPLELL
FT                 TVFDAILEIQDGPDRIQAGATFYVIKGGQQALLGKITAQRLGLLRIGLPST
FT                 IKEDVNQVKAAKQFAKIKDYKLTLPINRDIPPVIQPLRRCPIALQSQVKAK
FT                 LDELLEMDIIERVDSPTSWVSPLVPIMKDNGELRLCVDMRRANQAIQRLNH
FT                 PLPVFEDMLPRFSGSKALHNVGYKASISIKLSLAEDSRDITTFVTNWGLYR
FT                 YKRLSFGINCAPEFYQFLMESILSSCPQTAVFIDDIIIWGVTQQDHDRAVK
FT                 KVLKVKKSGY"
FT   CDS           3479..4633
FT                 /product="Gypsy-48_CQ-I_1p"
FT                 /translation="MQKCKFNQLEVSFLGHKLSGKGVLPTDDKVKSLLQCR
FT                 PPRSKEELRSFLGLATYVSRFIPDLASTNHPLRELIKTSVNFRWEKIHQDS
FT                 FEELKKRMASMQHLAFFDPKDRTLLVTDASGVGLGAVLIQFKNGVPRVISY
FT                 ASKSLTDTEKHYPPIEKETLAIVWGVERFQMYLLGVSFTVETDHRPLETLF
FT                 TAKSRPTARIEKWLLRLLAFRFTVIYRKGSSNIADPISRLAAQGYDDNWTE
FT                 ETEVFIRRVMVESLAALVDERIAEDFNNDTDLHIRTVQEAAAIDISEVVDA
FT                 TDKDTELQFVKEAIMNGDWSKDVLRPYSAFRSELSYVNELIIRGSKLVIPA
FT                 ALRARMLSLAHEGHPGQTCMKRRLRDRCWWPNMDKEISYRDV"
FT   CDS           4689..5591
FT                 /product="Gypsy-48_CQ-I_3p"
FT                 /translation="MERRPLPEKPWLDLAIDFLGPMPTGEHILVVIDYYSR
FT                 FVELVVMKNITAKDTINSLTKIFRVWGVPKTITLDNAKQFVSSEFSDFCKL
FT                 KGIHLNHTSPYWPQANGEVERQNRSLLKRLKIANALYGSWKAEMDRYLEMY
FT                 NNTPHSVTGKAPSELLQNRRLRFKFPDLEDLSSSPLESEVADRDKISKTKG
FT                 KEKEDARRKAKYSDIEVGDEVLMRNLHPTNKLSTDFLKEKFVVEDRNRSNV
FT                 RVKSLESNKSYDRNVSHLKKVLGSHTEQEEHNQDVDGATESKVDQRRSVRT
FT                 RQIPSRYQI"
XX
SQ   Sequence 5708 BP; 1735 A; 1018 C; 1425 G; 1530 T; 0 other;
     taaatggcga cgaagatggt ggagtgaaga aagcgaaatt taatttggaa tacagatttt        60
     tatttggttt gtaattgagt gtgaaaaaaa ggtaatttat gtgtttaaat tggaaatagt       120
     tatcgaaaga acgtgctctc aactgctgtg tgtaaatcag gaaaatttgt tgggaaactg       180
     ggcgtcaatg ttgtgttaaa tgttgtgata aaaaaaataa gaaataatta taaataaaat       240
     catggctgca aatttaacca aagaaaaaac gtggtgaaat tattattgct ctctaaaaga       300
     aaaaaaaata tatgtcgtaa agtgaaagca gaaaaaaatc aagagcaata aaatttgtgt       360
     taaatgtgcg cagcagtgat gatcgacgat ggatagtgac cttggaaggg gattaagatc       420
     agcttggtgt gcaaaagaaa agaaaaaaaa aaatgatttg ctcgcttgag gctgcgtgac       480
     cttggaaagg gattacaact gatcgacgca caaaacagga atgtgtgtcg ggatcgtgat       540
     tacttattgg acattcaagg tgcgtatgta ttgtagacga gtgagcaaca atttattttc       600
     gtttgctaat attgtgcaga gaaactttga tgatgcttga ttcctctata gggttgacgc       660
     tgaacctata gattttttca ttgatagatt ttgacgatga aaatataaat atatatatat       720
     ttttgataat gaatggacct agtaaatgac atttccggtt gctacgaaaa gattaaaatt       780
     ttcggtagtt acggaaaacg ttaaatttcc ggttgttacg gaaaatgttg gattttcggt       840
     tgttacggaa agaacgaaat ttccggtagt tacggaaaaa agtaaaattt ccggttgtta       900
     cggatttgaa atttccggtt gttacggaaa gactgaaatt tccggtagtt acggaaaaaa       960
     aagtggaatt tccggttgtt acggatttga attttccgtt tgttacggaa agactgaaat      1020
     ttccggtagt tacggaaaaa agtgaaattt ccggttgtta cggatttgaa aattccggtt      1080
     gttacggaaa tactgaaatt tccggtagtt acggaaaatg ttgaatatcc ggttgttacg      1140
     gaatgaaaga aatttccggt agttaaggga aaaagtgaaa tttccggttg ttacggattt      1200
     gaaatttccg gattttttac ggaaagactg aaatttccgg tagttacgga aaatgttgat      1260
     attccggtta ttatggaaag aaagaaattt ccggtagtta cggaaagagt gaaatttgta      1320
     tatgcatgtg tgtgtttcaa tgataaatat tggcagttga gagttcgtta ttgttggttt      1380
     tgatttgtct ttctaaatga gtgtaaaatt taaaataggc aatgatggat gacatttacg      1440
     tcccaccggt ttcaaccgct gaaacgggtt ccgctgctcc gccggggtca actgcgccac      1500
     cggcatctcc agctgtactt ttcagtccag catcctacaa tttgccacaa tttaagttca      1560
     gacaccttcc tacctcagaa gtgagcaatg cgtggattca gtggattcgc tggtttgaaa      1620
     atatcatgat tgcgagtggt atttctaaca gcgatgctcg gaaagctcaa atgctggcca      1680
     tgggaggcat tgagcttcaa ggagtattct acggtttgcc aggagcggaa gagtggggct      1740
     cgaatgcgta tggagcggca aagcagaaac tgactgatca tttctcaccc aaacaacatg      1800
     actcgttcga aagattccag ttctggtcga tgaaaatgga gaatgatgag ccgatcgaga      1860
     agtttctgtt acgagttcaa cagaaagctg aaaagtgcgt gttcggaaaa actgagcttg      1920
     aatgtcgcca gtatgcgatc gtcgacaaaa tcatccaaaa tgctccagaa gatctccgtc      1980
     gaaagctgct tgaaaaagat gccttgacgt tggacaccac agtcaagatc gtaaacgcgc      2040
     atcaagcagt taaataccaa gcagctcaaa tgaaaccgat ggcaaatcag caggtagagg      2100
     ttcaccgtat ggtggtcaag gacaaaggac cgaaggatgc ggactcaagc gacacgggta      2160
     gttgcagccg gtgtggttac ccgtcgcatc ggtccgggca gagatgtccg gctctcgatc      2220
     agaaatgcag aggatgtcac caatttggtc atttctgggt catgtgcagt catcgtaaac      2280
     ggaagtcgaa ctttaatcaa gtggatcgga agtacaacaa ccagaaacga taccggactg      2340
     tacgaaacat tgctactgaa ccgagccatg agactgaaga atatccagtc aacttgattc      2400
     acgacgacga taaggacgaa tacattacgt gtcgcgtagg aggagtggaa attccaatgt      2460
     tgattgattc cggttctact cacaacttga ttgatgacgc tacctgggaa atgatgaaac      2520
     tggaggatgt aacggtgcat tccgaacgtt tcgataactc gaagcggttc ctagcgtacg      2580
     gaagagtacc attggaacta ctgaccgtgt ttgacgccat tcttgaaatc caggatggtc      2640
     cggatcgtat tcaagctgga gctacattct acgtgatcaa gggaggtcag caagcactgc      2700
     ttggaaaaat aactgctcaa cgattgggtc tgctgcgaat cggacttcca agcactatca      2760
     aagaggatgt gaaccaggtc aaggcggcga aacagttcgc aaagatcaaa gactacaagc      2820
     tgacgttgcc catcaaccga gatataccac ctgtaattca accacttcga cggtgcccaa      2880
     ttgctcttca gagccaagtc aaggcgaaac tggatgaatt actggaaatg gacataatag      2940
     agcgagtgga cagtccaact tcgtgggtat ctccgctggt gccaataatg aaggacaacg      3000
     gggaattgcg cctttgcgtt gacatgaggc gggccaatca agcaatacaa cgtttgaatc      3060
     atccacttcc ggtttttgaa gatatgctgc caaggttcag cgggagcaaa gcacttcaca      3120
     acgttggata taaagcaagc atttccatca agttgagcct tgcggaggac agcagggaca      3180
     ttactacatt tgtgaccaat tgggggttgt atcggtacaa aaggttgtct tttggaatca      3240
     attgtgctcc ggagttttac caattcttga tggaaagcat cctatcgagt tgtcctcaaa      3300
     ctgcagtatt cattgacgat attatcatct ggggagtcac acaacaagat catgatcgag      3360
     cagttaagaa agttctgaag gtaaaaaaaa gtggatatta attgtttttt tttttctctc      3420
     taaactataa attacattaa atctttaggt attgaacgag cgaaacattt tgcttaacat      3480
     gcagaaatgt aaattcaatc agttggaagt ttcgtttctg ggtcacaagt tgtcaggaaa      3540
     gggcgttctt ccgacggacg ataaagtgaa gtcgttattg cagtgccggc cgcccaggtc      3600
     gaaagaagag ttacgcagtt ttctcggtct cgctacgtat gtctctcgtt tcattccgga      3660
     cctggcttct acaaatcatc ctttgcgaga attgatcaag acttcggtga atttccgctg      3720
     ggagaagatt catcaggatt cattcgagga attgaagaaa cgtatggcat cgatgcaaca      3780
     tctcgctttc tttgacccaa aggatcgtac cttgctggtg actgatgctt ctggtgtggg      3840
     cttaggagct gttttgattc aattcaagaa tggagttcct cgggtgatta gttatgcatc      3900
     gaagagctta acggatactg agaagcatta tcctcccatt gagaaagaaa cgctagcaat      3960
     tgtttgggga gttgaacgat tccagatgta ccttcttgga gtatctttca cggtcgagac      4020
     agatcatcgt ccgttggaaa cactgttcac agcaaagtcg cgaccaacag ctcggattga      4080
     aaagtggctg ctgagacttc tagctttccg attcactgtc atctatagaa aaggttcatc      4140
     aaacatcgct gatccaattt cacgattagc tgctcaaggg tacgacgata attggactga      4200
     ggaaacggaa gtgttcattc gacgcgtgat ggtggaatct ttggctgcat tagtggacga      4260
     gcggatagct gaggatttca acaatgacac agatttgcac ataagaacgg tgcaagaagc      4320
     agcagcaatc gacatttccg aggtggtgga cgctacagac aaagatacag agctacagtt      4380
     cgtgaaggag gcgatcatga atggggattg gtcgaaggac gttttgagac cgtactcggc      4440
     gtttcgtagt gagttgtcct acgtcaacga gctgattatt cgtgggtcca aacttgttat      4500
     cccagctgca ttacgtgcaa gaatgttaag tttggcacat gagggacatc cgggacaaac      4560
     gtgtatgaaa aggcggctca gggaccgatg ttggtggccc aacatggata aggagatatc      4620
     gtatcgtgac gtgtgagacg cgtgtgtaag gatgccgcct tgttcaaata cccagtccac      4680
     ctgagcccat ggagcggaga ccactaccgg agaagccttg gttggactta gctatcgatt      4740
     ttctgggacc gatgccaacc ggtgaacaca ttctggtggt gattgattat tacagtcggt      4800
     ttgttgagtt ggtagtgatg aaaaatatta ccgctaaaga cacgatcaac agcctgacca      4860
     agattttccg tgtttggggt gtaccgaaaa cgatcacgct cgataatgcc aaacagtttg      4920
     tgtcatcaga gtttagtgat ttttgcaaac tgaaagggat tcatctgaat catacttctc      4980
     catactggcc gcaggccaat ggggaggtcg agcgacagaa tcggtcactt ctcaaacgat      5040
     tgaagattgc aaacgctctg tacggtagct ggaaagcgga aatggatcgt taccttgaga      5100
     tgtacaataa cactccgcat tcggtaactg ggaaggctcc gagtgaattg ttgcaaaatc      5160
     gaagactcag gttcaagttt ccggatttgg aggatctttc ttcttctccg ttggagtcag      5220
     aagtagcgga cagggacaaa atttccaaaa cgaaggggaa agaaaaggaa gatgcgagac      5280
     ggaaggctaa gtacagtgac atagaagtag gagacgaggt tctaatgcga aatttacatc      5340
     caactaacaa gctttcaacc gatttcctta aagagaaatt tgttgttgaa gacagaaaca      5400
     gatcgaatgt tcgtgtgaag tcactggagt caaacaaaag ctatgaccga aatgtttctc      5460
     acttgaagaa agttttgggt agtcacaccg agcaagaaga acataatcag gatgtagatg      5520
     gcgccacaga gagcaaagtg gaccagcgaa gatcagttag aactcggcag attccgtcac      5580
     ggtatcagat ttgattgttt gaacgaagga ttattgattt tgttaacacc tgaatgactc      5640
     aatgtataaa gtgattaaag attgataaca actaatgatt tttgaacttt taattataga      5700
     aagggagt                                                               5708
//
ID   Gypsy-48_CQ-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   AAWU01034932;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_CQ_;
KW   Gypsy-48_CQ-I; Gypsy-48_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-171
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 476-476 (2011).
XX
DR   Genome; AAWU01034932; Positions    8595    8765.
XX
SQ   Sequence 171 BP; 45 A; 37 C; 44 G; 45 T; 0 other;
     tgtggtggat gcctctataa gtaagtacat aaatattata cgagttccag tctatgtgtg        60
     gaggattatc tacagcgcgg tgggttagca tccacgatca gcaatcgacg cagttgtgtt       120
     acgaagctca agcttaccgg tcacgttggt acgatacacg cggtcaccac a                171
//
ID   Gypsy-48_DEl-I repbase;    DNA;    INV; 4673 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   02-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_DEl-I.
XX
NM   Gypsy-48_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4673
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 490-490 (2012).
XX
RN   [2]
RP   1-4673
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           731..4672
FT                 /product="Gypsy-48_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MAESIIKPFLCENLEKSVLRREWENWLRAFKIYLEVE
FT                 DVQSVTKRRTKLLHLGGTQLQTVAYALPGAIVEFNEEVENDVFSILVEKLT
FT                 TYFSPKQNSTFERHLFRKISPEEGEAFGKFILRLRQQIQKCSFGSTKTEVE
FT                 EICLKDKIIDTWASPELKKKLLEKEHTLCEIIEACQVDEEINKQSQSMLSK
FT                 PFSDTINKISNWKSRPTSQNDCGRCGRSGHKEDSPTCPARQTKCNRCSRLG
FT                 HFARKCRTVLKRPYPPSYEGKNVESFKRRNVRWVKDGNQEGKEINRENCFK
FT                 INSDEEYEEWIKCRIGGEDVAMIIDSGSRLNIISQHDWLNLQAKKATVFNV
FT                 RTDAHNQFKGYASDTILNVICVFEAPIAVKSSSELIASFFVIEKGRQSLLG
FT                 RETATKLNVLRMGLPVNHIELVTPFPKWKNVSVKLSIDPYVDPVKQPMRRI
FT                 PVALEGKVNAKLEEAHKLDIIEPVNGPSPWISPIVVAFKENGDIRLCLDMR
FT                 QANRAILRENYPLPTFESFMTKLRNAKLFSRLDLKDAYHQLELEESSRQIT
FT                 TFITPQGLFRYKRLMFGINAAPEIFQRRLEELLASCNNVMNYIDDIIIFGS
FT                 NEKEHDEAVKKVCDVFKENNVLLNNEKCIWKTNRIKFLGHVLTDKGIEVDP
FT                 EKITAINSFRAPKTKEETRSFLGLVTYVGKFIPDLADLTEPLRELLKKDHK
FT                 FNWGQIEENGFQKLKSALYKIPSLSYFDPKKKTRLIADASPVALGAVLLQF
FT                 KDDLEPNIIAFASRSLTDVEKRYSQTEKESLALVWAVEKYYFYLIGLEFEL
FT                 VTDHKPLEAIFKPTSKPPARIERWLLRLQAYKFKIIYKSGKENIADSLSRL
FT                 CEITPSTCYDLKGEHSILRVIENTAPTSIAISDIAEKSAQDEEIVDAMMCL
FT                 QQGSWNSALSNKLYPFRHELSTIGTIMLRGVRIVIPSTLKRSVLILAHEGH
FT                 PGESAMKRRLRSKVWWPQIDRDTEKYVKDCRDCILVSQTTHPPPMKRTEFP
FT                 NGPWLSVATDLLGPLPNNEHILVLIDYYSRYMEFKFLRSITSESLIEACKE
FT                 IFSRLGYPRQLRTDNGRQYVSVEFRNFCKSCGIEQITTPPYWPQANGEVEN
FT                 MNRALVKRLKIAHLHKKNLKDEIRTFTLMYNVTPHGTTGTAPTELMFNRVI
FT                 RDKIPGIQDLVGEFTDSVEKDRDCINKQKGKEMADKRRGAKEAKISVGDKV
FT                 VLKNVVFPHKLTPNFDTTEYEVVKRTGDIVQVVGGGRMLMRNVSHLKKIPI
FT                 ETESPDDTNLEPLQNPGLGQVSDSVTQSKQQDPEEKDQHNQDGLKLKLVRK
FT                 EG"
XX
SQ   Sequence 4673 BP; 1606 A; 827 C; 1047 G; 1193 T; 0 other;
     ttggcgacga ggtgaaatct atggaaaacg aagctaaaat cgttagagta aactattaac        60
     cataaaacta agcaatacaa aaaggcgtat ttgttaaaag tgaacaaatt tatctcgcag       120
     gaacccgtta gttttttttt tctatctctc tttcattcat ctcgttcgtc gttgtcatgc       180
     gttcgagtgc gagtaaacgg tatgtccaga aaaaaaaaat tataataaga gaggaaactt       240
     taagagtaat tgcatttaag agtatgagaa gttgtgatca gataaaagca aagagctttt       300
     aaaaaaaaaa aagaaaatgt agaacaagtt ctgacaaagg tcagaggcaa agtaccgaaa       360
     aaaaaaattg aaaattaaat aataactgaa acattatctg gcagtggtca gaggcagagt       420
     gccgatgaaa atttgaaaaa aaattgaaat ttaaataata actgaaacat tatctgacag       480
     tggtcagagg cagagtgccg atgaaaattt gaaatttaaa taataaatga ggcattatct       540
     gacagtggtc aggggcagaa tgccgaataa aactataaaa aaaaaaagct aaattgtagc       600
     atgagtcaag aggttgacca agtttggaag gaaaattgct cgacagaagc attgttaata       660
     taaaataata aaattaaaaa aaaaaaaata tatatataca aatttgtttc aggtgcagaa       720
     ttaattcgta atggctgaga gcatcataaa accttttctt tgcgaaaatc tggaaaagtc       780
     cgtgctccga agggaatggg agaactggct tcgagccttc aaaatatatc tggaggttga       840
     agacgttcaa tcggttacca agaggaggac aaagctgcta cacttgggtg gcacgcaatt       900
     acagacggtt gcatatgcac ttccgggtgc tatagtcgag ttcaacgagg aggtggaaaa       960
     tgacgtattt tcgatattgg tcgaaaaact aacaacatac ttttcaccta aacaaaattc      1020
     gacattcgag agacaccttt tcaggaaaat atctcctgaa gagggcgaag cttttgggaa      1080
     attcatttta cgacttcgcc agcagatcca aaaatgtagt tttggttcta cgaaaactga      1140
     ggtggaagaa atatgtttga aggacaaaat tattgatacg tgggctagtc cggaactaaa      1200
     aaagaaactt cttgagaagg aacatacctt atgcgaaatc attgaagcat gccaggtcga      1260
     cgaagaaatt aataagcaat cacagtcgat gctatcgaag ccgttttcag acacaattaa      1320
     taaaatttcc aattggaaat cgcggccaac cagtcaaaat gattgtggaa gatgtgggcg      1380
     gtcaggtcat aaggaggata gtcctacatg cccagcgcga cagactaaat gtaatcgatg      1440
     ttcccgactg ggccattttg cccggaaatg ccgaactgtt ttaaaacgtc catacccacc      1500
     gtcgtatgaa ggaaagaacg tggaaagttt caaaagaaga aacgtacggt gggttaaaga      1560
     cggcaaccaa gagggaaagg aaattaatcg agaaaactgt tttaaaataa acagtgacga      1620
     ggaatatgaa gaatggatta aatgtagaat tggtggtgaa gacgttgcca tgataatcga      1680
     ttccggatcc cgtttaaata ttatttctca gcacgattgg ttaaatctcc aggcgaaaaa      1740
     ggcgactgtt ttcaatgtgc gtacagatgc acacaaccaa tttaaaggat acgcttcgga      1800
     cacaatttta aatgtcattt gtgtttttga ggcaccaata gcggtcaagt caagctcgga      1860
     gttgattgca tccttttttg taattgagaa aggacgacaa tcgctacttg gacgggaaac      1920
     agcaactaaa ttgaatgttc tgcggatggg cttaccagta aatcacattg aattagtaac      1980
     accgttccct aagtggaaaa atgttagcgt gaaactgtca atagatcctt atgttgaccc      2040
     ggtgaaacag cccatgagac gtattccagt cgcgttggaa ggtaaggtca atgcaaagtt      2100
     ggaggaagcg cacaagctgg atataattga accagtaaat ggtcccagtc cgtggatctc      2160
     accgatagtt gttgctttta aagaaaacgg ggacattcga ctgtgtttgg atatgaggca      2220
     ggccaaccga gcgattctta gagaaaatta ccctttgcct acgtttgagt cttttatgac      2280
     taagttgaga aacgctaaat tattttcacg tttggatctc aaagacgcgt accatcaatt      2340
     ggagctagag gaatcaagtc gacagattac aactttcatt acaccccaag gtttattcag      2400
     atataaacgg ctgatgtttg gcataaatgc ggctcctgaa atatttcagc gacgacttga      2460
     agaactcctt gcatcgtgca acaatgtgat gaattatatc gacgacatta ttatttttgg      2520
     aagcaacgaa aaagagcatg atgaagctgt taaaaaggtt tgtgatgttt tcaaagaaaa      2580
     taatgttctc ttaaacaatg aaaagtgcat ttggaagacg aacagaatca agttcctggg      2640
     acatgtgttg actgataaag gaattgaagt agatccagag aaaataacag ctattaattc      2700
     tttccgtgct cccaagacta aggaagaaac gcgtagtttc ctcggattgg tcacatacgt      2760
     tggtaaattc attccagacc ttgctgacct aactgaaccg ttacgtgagt tgttaaagaa      2820
     ggaccataaa ttcaactggg gacaaattga agaaaatgga ttccaaaagc ttaagtcagc      2880
     attatataag atcccgagcc tctcatactt tgaccccaaa aagaagacta gattgatagc      2940
     agatgctagc cctgtagctt tgggtgcagt attgctacaa tttaaagatg atctcgaacc      3000
     aaatattatc gcttttgcca gtcgaagctt aactgatgtg gagaagcgtt actcacaaac      3060
     agaaaaggaa agtttggctt tagtctgggc agtagagaaa tactattttt atttaatagg      3120
     actcgagttt gaactagtga ctgatcataa gccactagaa gcgattttta agcctacgtc      3180
     aaaacctccg gcgcgtatcg aaagatggct tcttcgtctt caagcgtaca agtttaaaat      3240
     catctataag tccggcaagg aaaatatagc tgacagttta tcccggttgt gtgagataac      3300
     accttccact tgttacgacc tcaagggcga gcacagcata ctgcgagtta tcgagaatac      3360
     tgcaccaaca tcgatagcca tatctgatat cgccgaaaaa agtgctcagg acgaggaaat      3420
     tgtcgacgca atgatgtgcc ttcaacaggg ttcttggaac tccgcacttt caaataaact      3480
     gtaccctttc cgccatgagt tgtcaactat tggtacaatt atgctaagag gagttcgtat      3540
     agtcattccg tcaaccctaa aacgatcggt gttaatactg gcacacgaag gccaccctgg      3600
     cgaatcggca atgaagcggc ggctgcgctc taaagtatgg tggcctcaga ttgacaggga      3660
     taccgaaaaa tatgtcaagg actgtcgaga ttgtattttg gtatctcaga cgacacaccc      3720
     acctccaatg aaaagaaccg agtttccgaa cgggccgtgg ctttcagttg ctacagacct      3780
     actagggcca ctcccgaata acgaacacat cttagtgtta atagattatt actcgagata      3840
     tatggagttt aagtttttgc gctcaatcac atctgaatcg ttaattgaag cgtgtaagga      3900
     aatctttagc aggttaggat acccaaggca gttgcggact gataatggtc gtcagtatgt      3960
     tagtgttgag tttcgaaact tttgcaaatc gtgcggaatt gagcaaataa cgacaccacc      4020
     ttattggcca caggccaatg gcgaggtgga aaacatgaat agagctttag taaagcgtct      4080
     aaagatagcc catctacaca agaaaaatct taaagatgaa atcagaactt ttacactcat      4140
     gtacaatgtt acccctcatg gcactacagg cacggctcca acagaactaa tgtttaatag      4200
     agttattcga gataagattc cggggataca agatttggtg ggagagttta cagattcagt      4260
     tgaaaaggat agagactgta taaataagca aaaaggaaag gaaatggctg acaaaagaag      4320
     aggagcaaaa gaagctaaaa ttagcgtagg agataaggtt gtccttaaaa atgtagtttt      4380
     tccccacaaa cttacaccga actttgacac cactgaatat gaagttgtaa aaaggacagg      4440
     tgatatagtt caggtagtag gggggggcag aatgcttatg agaaatgtta gtcatcttaa      4500
     aaagattccc atagagacgg aatcacctga tgataccaac ttggagcccc ttcaaaatcc      4560
     tggcctaggt caagtttcgg attcagtaac ccaatccaag cagcaagacc ctgaggagaa      4620
     ggaccaacat aaccaggatg gattgaagct gaagctggtg aggaaggaag gga             4673
//
ID   Gypsy-48_DEl-LTR repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-196
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 491-491 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 196 BP; 57 A; 37 C; 48 G; 54 T; 0 other;
     tgtgggaacc ggcaccaagg agctaagcca gcgatgacgg ttgtaggaga gcgaggctct        60
     ctctctcttc ctagaccttg gatcactgtt ctcaacataa ttagtttagt ttgattttgg       120
     cactcgccgc ggaaggagag tgaaaataaa gaacatttat aaaagacaat ctaacgtgat       180
     ttattgagtt gttaca                                                       196
//
ID   Gypsy-48_DWil-I repbase;    DNA;    INV; 6376 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_DWil_;
KW   Gypsy-48_DWil-LTR; Gypsy-48_DWil-I.
XX
NM   Gypsy-48_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6376
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1865-1865 (2012).
XX
RN   [3]
RP   1-6376
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1144..2826
FT                 /product="Gypsy-48_DWil-I_1p"
FT                 /translation="MMNADEESNNQPPNCSTLTAAQMLVGMGQRDTRFSQG
FT                 AIPRRLSLNDVATPVSAPLNTGLDPIQEQFSRENAEAYAAVSIRQLEAAVQ
FT                 QCHTQMRQEMTDFVSRKIDKSLEEGFEKLLDRLEVRKGSSIGSSRSGMTQI
FT                 SQPGARPYGGEQPAYPRRHAAQSSIRENPQRMAGEAPNMENAPVSGAGLQA
FT                 NGWDQLHRGNWQSSNQFPLPGAGISASTALPGHQCHRTYQQMRQSEQRAEA
FT                 EVDRGNNQPPLLPQRNRPSSYRVADHSRRVFVPIAKWQVMFSGRSGGITVE
FT                 DFLFRVEHLQRHYNTPWEEILRDFHQLLSDEASEWYWLQMRTKPPSDWPSL
FT                 KAAMEDQYCDTRCDYERIQDMMERRHKTGESLDSFFQAMRRLRAGIKSPLS
FT                 EDWVVKTIKKNLREPWKHLVYPIRAYTVDHLREECRDVERNFADELAKQSG
FT                 FSRAPANRRQDFRTGHVEDLYEPVSELGGEPAVPSVPIEAMTDSLAQRILV
FT                 CWNCQKSGHAYKDCDDQQRRIFCYKCGRSNTVTPRCPKCNPGNSRRSEARV
FT                 AESRSNETTSNRPN"
FT   CDS           2751..6086
FT                 /product="Gypsy-48_DWil-I_2p"
FT                 /translation="SGKLEKERGESGGVPFQRNYIEPPKLVRNNESASGVG
FT                 GFGKPFEERMRLYLEARNRIFQVNSLEGMTTLSRRVRKARERFRQRRWERE
FT                 TIRLTVAAVVSAERSDPRAYADVAIGEQVIRGLLDSGASVSVLGRGCRELV
FT                 EQLGLKWTPYLASVTSAGGEMNPIIGKVRVEASYKGLARIILFYLCPSLQQ
FT                 TAYLGVDFWKAFGIAPEMFPAEVSARQQEPNQISELGQEPHALSEQQQIRL
FT                 QAVKDSFLSYEKEGLGRTTRMKHRIELLEGTVPVKSRHYPVSPAKQRLIYD
FT                 ELDEMLRLGVIEESESAWSNPVTLVMKPGKNRLCLDARKINQATKKDAYPL
FT                 QQIDGILSRIGETIYISSVDLKHAYWQIELEEHSRPVTAFTVPGRPLYQFA
FT                 VMPFGLCNAGQSLCRLMDQVIPAALREKVFVYLDDLLVVTPDFESHLGVLQ
FT                 QVADVLKSAGLTIGLKKSHFCHKELRYLGFIIGGGVLRTDPRKVEAIQKLI
FT                 TPRSVREVRSFLGTVGWYRRFIQNFAELAAPITDTLKKNGKFHMTDEAIEA
FT                 VRRLKEAMTTAPVLSHPDFGRRFFIQCDASNIGIGAVLFQEDPDGGERPIE
FT                 FYSYKLNKCQQNYSVTEKECLAAIMAIKRFRPYVEMMPFTVITDHSSLRWL
FT                 MSLKDLDGRLARWSLKLQAFDFEIVHRKGSENVVADTLSRMVEEIRVDSIL
FT                 GVETTEFDSPEYKELRQEVIANQEKLPDLMVEDGYIFKKASAHQGPSEILD
FT                 GGWRLWIPPALTTTLVAQAHEPTIRSHGGIAKTLSILRQRYHWPGMVAQVK
FT                 AYVRDCRVCKETKSTNCGPKPGIGAEVKSYRPFQKIYIDFLGKYPRSRGGH
FT                 AYVLVVVDHFSKFVFLHAMREATANGVVKFLKREVFHKFGVPELVHSDNGK
FT                 QFVSKQFEQLLREYGVKHLRTAVYSPQSNAAERVNQSVLNAIRAYLNDDHR
FT                 DWDLYLSEIECSLRGAVHQATGVSPYFALFGQNMFTNGADYQLARKLQSLE
FT                 DYDLNIASRETKMALMRDEVRKRLRVAHDKSALSYNRRSREVHFRPGQEVY
FT                 RRNFVLSNFGKNFNAKFARKYLKCRIRSLVGNNMYETETLEGKPSGIYHAK
FT                 DLKQ"
XX
SQ   Sequence 6376 BP; 1839 A; 1351 C; 1737 G; 1445 T; 4 other;
     ataaatggcg cccaaattaa tcagcagaaa ttcggttttc atcgaacaag ttattcattt        60
     ttgggggaga ggaacgtatg ggtccgagcc cacaaaaatg aggaacgttc taacgatcgg       120
     tgaaaatccg agtttctgga acgatagtgt tagcttacaa tgtccctttt gtttcgtttg       180
     ctgctaagga tgcccgtcta ttaccgggat aggcgggaac ccggtgtcta ggaaagcgga       240
     gaacagaccg aacattgtca agtacctgat ggctccagat cgaatttttt ttatcagcca       300
     cggcggcatt acaacggaag aagtcgtctg taattagcga gcgtgccttg atggaatcat       360
     gtcgatctga aagaaacagg agagatatca gtaaagaaaa aaaaattaat gaagaaagta       420
     aaagtagccg gagtcatcgc acaggcggta taatgcctaa gcgattcgcc cggaggtagc       480
     attagcgtca aattaktgag tagaagatac gattgctgag atagttggac aatgttaggt       540
     gtagttagta tgtggaatta tgttagtcat cttgtctaaa cttacgtgat gttttctatt       600
     agtgcggtag ccaagtggaa ctaacgagcg tctagtacgg gcggcctcag actttgatga       660
     agtttgcagt agcgtcccgt catcaggggg gtgatccgtt tacatagcgt aatatgttgc       720
     atcctcctgg tacgtcatcg aaagagcacg gtcacctgaa agcaaataga ktttcatcac       780
     aaatttgaac tggtcaggtt cttgactgtc ggtcatcaaa tttacgattg atgacctgaa       840
     cagtcgacga cctactattt gtttagtaat acttctcggt cacacgcaca cgacgttcaa       900
     cgtaaaaggc tggcatagat gaattggtca gtctcatccc ggggagcgta tccgtcggtt       960
     tctcactaga ttcccctttt ttcctgcata gatacgtgaa tcagtcaagg tctaaaaaaa      1020
     aaaaaaaaaa gagaaagtat attggtgaat aacaaaaata taaacaaaaa aaaaggagaa      1080
     gggagtaaag attagattaa ggatagtaat tttaaattaa tacaaaaagt aggttaatta      1140
     ggaatgatga atgccgatga agaatccaat aaccagcctc ccaactgctc caccctaaca      1200
     gcagcccaga tgctggtggg aatgggacag cgggatactc ggttttctca aggggctatc      1260
     ccaaggcggc tatctttaaa tgatgtagcg actccagtaa gcgctccttt gaatacgggc      1320
     ctcgatccga tacaagaaca gttttcccgg gaaaatgccg aggcgtatgc ggcagtatca      1380
     attaggcagc tcgaagcggc ggtccagcag tgtcacactc agatgaggca ggagatgacc      1440
     gacttcgtga gccgtaaaat agataaaagt ctggaagaag gcttcgagaa actattggat      1500
     cgtctagagg tgagaaaagg gtcgtccata gggtccagcc gttcgggtat gacacagatt      1560
     tcacagcctg gggcgcgtcc atatggggga gaacaaccag catatccgag gcgacacgcg      1620
     gcccaatcca gtataaggga gaatccacag cgtatggcgg gtgaagcccc aaatatggaa      1680
     aatgcgccgg tgagtggggc cggactccag gcaaacggat gggaccaact tcacagagga      1740
     aactggcaat ccagcaacca attcccgtta cccggagctg gcatatcagc gtccacagcg      1800
     ttgccgggtc accaatgcca tagaacgtat cagcagatga ggcaaagtga acaacgggca      1860
     gaagcggaag tcgacagggg gaacaaccaa ccacctctac ttccccagag aaacagacca      1920
     tctagttacc gagtcgcgga ccattctcgg agggtgttcg ttcccatcgc caaatggcag      1980
     gtgatgtttt cgggtcgatc cggaggcatt acagtggaag atttcttgtt tcgcgtggaa      2040
     cacctccaga gacactacaa cacgccgtgg gaggaaatac tccgagattt tcaccaattg      2100
     ctgtcggacg aggcgtcaga gtggtactgg ctgcaaatgc ggacgaaacc accatcggac      2160
     tggccatcgc tgaaggctgc gatggaagac cagtattgtg acaccagatg tgactacgag      2220
     cgaatccaag acatgatgga aaggaggcac aaaacaggcg agtcgttgga ttcatttttc      2280
     caggcaatgc ggaggctacg ggccggaata aaatcgccac tctcggaaga ctgggtcgtg      2340
     aagacaataa aaaaaaatct gagagagcca tggaagcatc tggtgtaccc tatacgggcc      2400
     tacactgtcg accatcttcg cgaggaatgt cgcgatgtag agaggaattt cgctgacgag      2460
     ttggcaaaac agagcggttt cagccgagca ccggcaaacc gtcgccaaga tttccgaacc      2520
     gggcacgttg aggatctata cgagccagtt tcggaactcg ggggtgaacc agcagtccca      2580
     tcggttccca tagaggcaat gacggactca ttggctcaac ggattttggt ttgctggaat      2640
     tgccaaaaat ctggccacgc ctacaaggat tgtgacgatc aacagcgccg aattttctgc      2700
     tacaaatgtg gacgatcgaa caccgtaacg cctagatgcc ccaaatgtaa tccgggaaac      2760
     tcgagaagga gcgaggcgag agtggcggag tcccgttcca acgaaactac atcgaaccgc      2820
     ccaaactagt ccgaaataat gagtctgcgt cgggagtagg tggatttggg aaaccttttg      2880
     aggagcgaat gaggctatac ctggaagcca ggaacagaat ttttcaggtg aactcgctag      2940
     aaggcatgac tactctatct aggcgagttc gtaaggctcg agaaaggttt cgacaaagga      3000
     gatgggagcg agagacgatt cgattgactg ttgcagctgt tgtgtccgca gaaaggtccg      3060
     atccgagagc atatgccgac gtggccattg gagaacaggt catacgagga ttattggatt      3120
     caggggcctc cgtaagcgtt ttaggaaggg gatgtcgaga gttggttgaa caactggggc      3180
     taaaatggac cccgtatcta gcttcagtaa caagtgctgg tggcgaaatg aacccgatta      3240
     ttggcaaggt gcgcgtggag gccagttaca aaggattagc gcgtattata ttattttatc      3300
     tgtgcccgag tctgcagcaa acggcgtatc taggggtgga tttttggaag gctttcggca      3360
     tagctccgga aatgttccca gcagaagtca gcgctagaca acaggagcca aaccaaatct      3420
     ccgaactagg acaagagcca cacgcgctat cggagcagca gcagattaga ctgcaagcgg      3480
     taaaagattc ctttctttca tacgagaaag aaggattagg gcggacaacg cgcatgaagc      3540
     atcggatcga gctactggaa ggaacggtac ctgtgaaatc gaggcattat cccgtgtctc      3600
     cagccaaaca acgcttaatt tatgacgaat tggatgaaat gttgcggttg ggagtcattg      3660
     aagagagcga gagcgcatgg agcaatccag tgacattggt catgaaacct gggaaaaacc      3720
     ggttgtgcct cgatgcacgg aaaatcaatc aggccactaa aaaagatgcc tatccactac      3780
     agcaaatcga tggtattctg agccgaattg gagagactat atatataagt agtgtcgacc      3840
     taaagcacgc atactggcag attgagttgg aagagcatag tcgtcctgtt actgctttta      3900
     cagtccctgg gagaccactc taccagtttg cagtgatgcc tttcggactc tgtaatgcag      3960
     gccagagttt atgccggcta atggatcagg tgataccagc tgcgctcagg gaaaaggtat      4020
     tcgtttatct ggatgacttg ttggtagtca caccagattt cgaatcccat ttaggcgtct      4080
     tacagcaagt ggcagacgtt ttaaagtcgg ccggcttgac catcgggtta aagaaatcgc      4140
     acttctgtca caaagaatta agatatctgg gcttcatcat cggaggaggc gtgttaagaa      4200
     cggacccccg gaaagtggag gcgatccaga agttgatcac cccaagaagt gtgcgggaag      4260
     tgcgaagttt cttgggcacg gtgggatggt accggaggtt catacagaac ttcgcagagt      4320
     tggctgctcc aattacggat actcttaaaa agaatggaaa gttccatatg accgacgaag      4380
     ctatagaagc ggtaagacgc ttgaaggaag caatgacaac agctccagtt cttagtcacc      4440
     ccgatttcgg aagaaggttt tttattcagt gtgacgcctc taatattggg ataggtgcgg      4500
     tactcttcca agaagatcca gatggaggtg agagacccat cgaattctat tcgtacaaat      4560
     tgaataaatg tcagcagaat tacagcgtta ctgaaaagga gtgtctagcg gcgattatgg      4620
     cgatcaaacg gtttaggcca tacgtagaga tgatgccgtt cacggtcatc acggatcatt      4680
     cgagtctgag gtggctaatg tcactgaaag acctggatgg tcgattagca cgatggtcac      4740
     taaaactgca agctttcgat ttcgaaatag ttcaccgaaa ggggtcagaa aacgttgtgg      4800
     cagacaccct atccaggatg gtagaggaaa tcagagtgga ctctatcctg ggcgtggaga      4860
     ctacagagtt tgactcccct gaatataagg agttgcggca ggaagtcatc gccaaccaag      4920
     aaaagcttcc agacctcatg gtggaggacg gatatatttt taaaaaggca tccgcccatc      4980
     agggcccctc tgagatcttg gatggtggat ggagattgtg gatacctccg gcattgacca      5040
     caactttggt ggcacaggcg cacgagccca caatccgaag ccatggggga atcgcgaaga      5100
     ctctatcaat tctccgtcaa aggtatcact ggccaggaat ggtggctcag gtgaaggcct      5160
     atgttcggga ctgccgagtg tgcaaagaaa caaagtcgac caattgtggg ccgaagccag      5220
     gaataggagc tgaagtgaag tcctatcggc cattccagaa gatctatata gacttcttgg      5280
     ggaaataccc acggtcgagg ggaggtcacg cgtacgtgtt agtggttgtg gatcactttt      5340
     caaaattcgt gtttctgcac gcaatgcggg aggctacagc gaacggcgtg gtgaaattcc      5400
     tcaaacggga agttttccac aaattcgggg tgccggaact ggtgcacagc gacaacggga      5460
     aacaatttgt gtccaagcag tttgaacaat tgctgcggga atatggcgta aaacatctcc      5520
     gcactgcggt atattcacct cagtccaacg cggccgaaag agtcaaccag tcagtgctga      5580
     acgcgatccg ggcttaccta aacgatgatc atcgggattg ggacctgtat ctcagcgaaa      5640
     tcgaatgcag tttgagaggg gcggtgcatc aagccacggg agtgtcacct tattttgccc      5700
     tttttggcca aaacatgttc acaaatggag cagactatca actggcacga aagctgcagt      5760
     cattggaaga ctatgaccta aatattgcga gtcgtgaaac taaaatggcg ctaatgaggg      5820
     acgaggtccg aaagaggcta agagtcgctc atgataaaag cgctttgtcc tataaccgac      5880
     ggtcaaggga ggtgcatttt cgacctggac aggaagttta tagacgaaat ttcgtgttaa      5940
     gcaattttgg gaagaatttt aatgcgaaat ttgcgcgcaa gtatctaaaa tgccgaataa      6000
     gaagcctcgt tggtaacaat atgtacgaaa ccgagacact cgaaggaaaa cctagcggca      6060
     tctatcatgc gaaggatttg aaacagtaag gagagtcaaa aaggtgaggg attacctgaa      6120
     agcaaattta tatggtcagc aaactgaggc aatagatact tcaagtactc acctgattcc      6180
     agcggtgtga aatggtcaat ccagggcatg gcgtagtcat tcctcagtct ctgggtgtgt      6240
     gggcgttttc cctcgttggg cgtgtcgtag ctggtcctgg gagcgctgtc gtgtgatatc      6300
     ccgagtggat tgwagttcgc gtagagccat ttttcacggt catatatagt gacaasccac      6360
     aaatatgccc gtgtgt                                                      6376
//
ID   Gypsy-48_DWil-LTR repbase;    DNA;    INV; 1866 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_DWil_;
KW   Gypsy-48_DWil-LTR; Gypsy-48_DWil-I.
XX
NM   Gypsy-48_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1866
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1866-1866 (2012).
XX
RN   [3]
RP   1-1866
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1866 BP; 536 A; 326 C; 419 G; 585 T; 0 other;
     tgttatggct ggggtgtttt tttttgttta tagttatcga taggtcagga aatatgtagt        60
     gttggataat ggagacagga aggtagggaa tttttcccct taaacgggta agggagcggg       120
     taacaaatga gaagatcggt agcccggctt ttcaaatctg agagagagga tttcggagtt       180
     gggactgttc ctggtcggga tagtcgggac agatgaaggt caaatcggtc gaagaagttc       240
     tcgagagtgg ttggttaggg cgagagccta agaaagaaaa agtaaaagta aaaaaaaaat       300
     taataccaaa gaaaaaacgt gatgtgagaa tccagaaaaa ttttgtgcag tgatttattc       360
     caagagggaa gccaaatcct gggtatatgc ccatacggga ttggacaaga tcgaggggta       420
     agtgaatctt tcatattcag ggacggccca ggggagttag tcctaatctt atcctcacct       480
     ttgggattct ccgtacaggc caaccaaatc ggcagcaatc agaggtcagg ccgcatattt       540
     tcggggcctg gccaagtttt tatttccccc ccatgattct ccatggcctc gtgaccacca       600
     catattccgc cttcaggaga aaattataaa ttaaaataga agagggagtt ccggcctgaa       660
     cacgagttta acctgaaatt tttacagaag ccggcgcggg ataaatctcc taaactatcc       720
     tttgggagtc gtaaggtgaa tctgttcccc acgtgatcac ccaatacgct ccccgcaaga       780
     ccgatttatt tttaaattgt aatcccccgc ctatttttat cgtcctcgtt tttatataca       840
     tatatattat atactcatac agagctaatt tattgcttaa atcatacata attatttatt       900
     tattcatata accttatcct aattatttat acatttattt attcaattat tcatttactt       960
     aattattaat ctgctcaatc aattatttat ttaatttatt tatttgtttt tatttaatcg      1020
     ctcgaatgag cctcgttttt ttttgtttgc caatatcgag tctctatatt aataatatcg      1080
     tttgttcttt ttttattata attaatctta ttcttgtaaa acgtgccgcc gctacatctc      1140
     ttgtcgtaac gtattagtcc cactaaaact ccagtaggtg taatctgccc gtagtcctta      1200
     tcgtaaaaga agagctcttt ttttaggtag gtcccctatg gtcaggttgg cgtctgaaaa      1260
     aaaagcaaag gagaaattat caaatttata tttttttttg ttctttttgt tgcccgaata      1320
     cagagggtca ttggagacag agtgatgtct cggtgagcgt gtaaaaattt gaattaatta      1380
     gattaaccta tcattttcta aattattata aacaattgag aaaagatgat gcatatcgag      1440
     tagtttggtt tgtcggaaga gggggggacg gtgagtaaaa cccggagaaa tgggatgagc      1500
     gatcggtaat gaaccgataa taccagcgaa tgtgtttaaa tggggcagta ggataccaaa      1560
     actgccagga agggtgggta tgccgggatc aattcgaagc ccaaggccag atccccaagc      1620
     cggtgggtgt gaagcgtttg tgtgtgtgta atgaccgaag tatatgtagt aatatttttt      1680
     tttagtcctg agtaacagtc tccagtggat gtcgtcctca atgatgtacc ctggattgtg      1740
     tttgatacat ttttttattg ttgtgcgcga aagaggcagg gttatcgaat cccacgaccc      1800
     gattatagct agccggcgag cctcttcgag ttatcgacgc gcataggacc aggtaaggtc      1860
     ataaca                                                                 1866
//
ID   Gypsy-48_LMi-I repbase;    DNA;    INV; 4006 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4006
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(496..648,676..1275,1158..2537,2506..2757,
FT                 2630..4003)
FT                 /product="Gypsy-48_LMi-I_1p"
FT                 /translation="MPLDEVADLADKIYDALTPASVSAVAASCSSSSTSMV
FT                 THNDYDAPLLKWIYFNETAAEVEAISAEDQEAVHQQLLTNQNQISPFAGTI
FT                 EHSGTKRENVLNHVITQSQRQSGVDAPTDCHAVSRRLFVSDRKTGQKYLVD
FT                 TGSDVCIYPRTHLHSKRPRITFCLSAANNSVIPTYGTLRLILDLGLRRDLS
FT                 WDFTIADVCEPIIGADFLAHYKLLPDVAHAXLVDGVTGLTTSGPAAGPGDF
FT                 GEIQLHTRSSTVTGRGTRXTSGRRHRPHNFRAGRGAGRFRRDTASHTVKLI
FT                 QCTSGEYADLLQEFPALTRPPGAPKEVSHDTVHYIKTTDGPPVSCRPRRLA
FT                 PDRLAIAKAEFDSMIREGVMRPSSSPWSSPLHLVPKKSGAWRPCGDYRALN
FT                 SRTVPDRYPVPLLRDYNHALRGAKVFSVLDCAKAYTQIPVAEPDIPKTAII
FT                 TPFGLFESRFMTFGLRNAAQTWQRFIDSVLRGLPFSFAYLDDILVFSSSPE
FT                 QHRQHLVEVFKKLDQYGVVLNTAKCVFGQPEVNFLGHKISSSGSLPLPEKV
FT                 EAILKIERPKTMKELRRFMGMLNFYRRHLPHSAEIQEPLTAVLSGPKAKGN
FT                 SLIVWTDKMVSAFETAKNSIANATLLAHPEHNATLALVVDASQTALGAVLQ
FT                 QWCDDRWQPLAFFSRKLSPSQRKWSAYDRELLAIYEAIKYFHPQLEARDFI
FT                 IFTDHKPRHSIYLQIISHDIPFRTYALLAQQHNQFYSQFSRMETYFRHQHV
FT                 VADCLSRVSTISSTMDYAPPSSADRRGTSKHATGHIIWLKPTIDLIAYLVS
FT                 ALYPVQWIMPRQAQQTDEELQNMLQDISSGLNLQLIDVPGLQNKLYCDISS
FT                 GKPRPFLPVAFHRCAFDNIHNLCHPGIRSTARLVSDRFVWPGIQKDCREWT
FT                 RTCVNCQRSKVHRHTHAPVGDFPDTTARFTHVHIDVVGPLPSSDGKRYLFT
FT                 MIDRFTRWPEATPVDNISAETLAHAFISTWIARFGCPLHVTTDRGRQFESD
FT                 LFAQLNKFCGTVQHKTTSYHPASNGTVERWHRSLKAALMCYNTGWTTALPM
FT                 VLLGLRNTYKPDLDSSVAELVYGEALRLPGEFVDPRFLKLPDHDDCEFINQ
FT                 LREHISHIRPHPASRHGTPSSYVPQDLEKCTHVMLRTDGIKPALQPPYTGP
FT                 HKVIRRGNRTVEILINNKPSTVSIDRLKPAYMFQDVLPADVPPPPPAHTPT
FT                 IPSAPAPSTSAERHPTRTTRLWRHVHFPARFRDDXPLLPRGLM"
XX
SQ   Sequence 4006 BP; 1094 A; 1064 C; 914 G; 928 T; 6 other;
     ctaaattggt gacctcagga agaaagacaa tagttactta ggcatgacat caccagagaa        60
     gctgttcctt cagttccgac tagcggtccg cttaccaccc ttctggcctc acaatccggc       120
     gttgtggttg cgcaagtgga ggccagcttc cactatgcag gcattacggc ggactcgaca       180
     aaatttgcaa ttgtggtaag ccagttagat cataaatacg ccgcagagat tgaagacgtt       240
     atcacctcgc cacccgctac ggaagcctac agtaaattaa agtcagaatt aattcgccga       300
     gtgtccgcgt cccaagagga gagaatcaga caagtgctaa ctcaagaaga tatcggcgac       360
     aggcggccgt cgcagtactt gmggcatttc cgcagtaaag tagacactgg cacagtacct       420
     gacagcctgc tgcgaactct gtggagcagc cgacttccac cwcaagttaa agctattatt       480
     gcctcacaaa acaacatgcc tctagacgaa gtagcggatt tagctgacaa gatttacgac       540
     gcgttaacac ccgcatcagt gagtgcagta gcggcatcat gcagcagttc gtccacatca       600
     atggtcacac acaatgatta tgacgctccg ctgctaaagt ggatttactg acaaaacaga       660
     ttggcgagtt attgattcaa cgagaccgca gccgaggtag aagcaatttc cgcagaagat       720
     caagaagccg ttcatcagca acttcttaca aaccagaatc aaatcagtcc atttgctggt       780
     accatcgaac attcggggac caagcgcgaa aatgtactaa accatgtgat cacccaaagc       840
     cagcggcaat cgggtgtaga tgcgcctacc gattgccatg ctgtgtctcg gcgcctcttt       900
     gtcagcgacc gcaaaacagg tcagaaatat ttggtcgaca cgggttcaga cgtgtgcata       960
     tatccgcgca cacacttgca cagcaagcgg ccacgaataa ctttctgctt atcagcggcg      1020
     aataattctg tcatccccac ttacggcact ttacggctca tactcgacct tggattacga      1080
     cgtgacctat catgggattt cacgattgct gacgtgtgtg agccaatcat aggagcggac      1140
     ttcttggcac attataaact gttaccggac gtggcacacg cgmaactagt ggacggcgtc      1200
     accggcctca caacttcagg gccggccgcg gggccgggcg atttcggcga gatacagctt      1260
     cacacacggt caagctgata cagtgcacca gtggcgagta tgcggacctc ttgcaggaat      1320
     ttccagctct gacacggcct ccaggagcac ctaaagaggt aagccacgat acagtgcatt      1380
     acattaaaac cactgatggc ccccctgtat catgtcgtcc tcggcgccta gctccagacc      1440
     gtctggcgat agcaaaggcg gaatttgaca gtatgatccg cgaaggtgtg atgcgtccat      1500
     ctagtagtcc atggtcttct cccctccacc tcgttccgaa gaagagtgga gcatggcgtc      1560
     cctgcggtga ttatagagcc cttaactcca ggacagtgcc agacagatat cctgttcctt      1620
     tattgcgtga ctacaaccac gcattacgag gggcaaaagt gtttagcgta ctcgactgtg      1680
     ccaaggcata tacgcagata cccgttgcgg aacctgacat tccaaagaca gctataatca      1740
     cgccatttgg actatttgag agtcgtttca tgacgttcgg cctcagaaat gcggcacaaa      1800
     cgtggcaacg atttatagac tcagtgttgc gaggcttacc tttctcattt gcatacttgg      1860
     atgacattct tgtgttttca tcctcaccag agcaacaccg acagcacttg gtcgaggtgt      1920
     ttaagaaatt agatcaatac ggggtggtgc taaacacggc taaatgtgtg tttggacaac      1980
     cagaagtcaa cttcctcggc cacaaaatat cgtcttcagg ctccttaccc cttcctgaaa      2040
     aagtagaagc cattctcaag atagaacgac cgaaaaccat gaaggaatta cgtcgtttta      2100
     tgggaatgct gaacttctat cgtcgccacc tgccacattc tgctgaaatc caagagccat      2160
     taactgctgt gctctctggt ccaaaagcta aaggcaactc gctcatagtg tggacagaca      2220
     agatggtttc agcattcgaa acagctaaaa acagcatcgc aaatgcaaca ttgctcgctc      2280
     accccgagca caacgcaacc ttggcacttg tagttgatgc tagccagacg gcactcgggg      2340
     cagtgctaca acaatggtgt gatgacaggt ggcaacccct ggcattcttt tcacgcaagc      2400
     tgtcgccatc acaacgcaaa tggagtgctt atgataggga gcttctggcc atttatgagg      2460
     caataaaata cttccaccca cagctagaag ccagggattt tataatattt acagatcata      2520
     agccacgaca ttccatttag gacatatgca ttgctcgccc aacaacacaa ccagttttat      2580
     agccagttta gcaggatgga gacatatttc cggcatcaac atgtcgtagc tgattgccta      2640
     tctcgtgtca gcactatatc cagtacaatg gattatgccc cgccaagctc agcagaccga      2700
     cgaggaactt caaaacatgc tacaggacat atcatctggc ttaaacctac aattgattga      2760
     tgttcctggg ttacaaaaca aactgtactg cgacatatcg tctggaaaac ctcgaccctt      2820
     cctgcctgtt gcattccatc gatgtgcatt tgataatatt cataacttgt gtcatccagg      2880
     aatcagatcc actgctcgat tagtgtcgga ccgatttgtg tggcctggta ttcagaagga      2940
     ctgtcgcgag tggacacgca catgtgttaa ttgtcaacga agcaaggtcc atcgtcatac      3000
     acatgcgcca gttggtgatt tcccagatac gacagcccgc ttcactcacg tccacattga      3060
     cgtcgtagga cctcttcctt catcagatgg caagagatat ctttttacaa tgatagacag      3120
     attcactcgc tggccagagg caacaccagt ggacaatatc tccgcagaaa ccttggccca      3180
     tgcatttatt tcaacgtgga ttgcacgctt tggttgccca ctgcacgtca caacagacag      3240
     agggcgacag ttcgagtcag acctgtttgc acaactcaac aaattctgtg gcacggtaca      3300
     gcataaaacg accagctacc accctgctag taatggtacg gtcgaacgat ggcaccgttc      3360
     cttgaaggca gctctaatgt gctacaacac aggttggact actgccttgc ctatggtatt      3420
     acttggtctg cggaacacct acaagccaga tctagattca tcagtggccg agttagtgta      3480
     tggagaagca ttaagactac caggcgagtt tgtggaccca cgcttcttaa aacttcctga      3540
     tcatgatgac tgtgagttta tcaatcaatt acgggagcac atatcccaca tacgccctca      3600
     cccagcatca agacatggaa caccatcaag ctatgtacct caggacttgg aaaagtgcac      3660
     tcatgtaatg ctccgcaccg atggcataaa gcctgcactg caacctccat acacaggmcc      3720
     gcataaagta atacgaaggg gaaatcgcac ggtggagatt ctcattaaca acaagccctc      3780
     tactgtctcc atcgaccgac tgaagccagc atacatgttc caggacgtgt tgccagctga      3840
     tgtaccgccg ccacctcctg cgcatactcc tacaattccg tcggcaccgg ctccttcaac      3900
     cagtgcagaa agacatccaa caagaacaac gagattgtgg cgccacgttc acttcccggc      3960
     gcgcttcmga gacgackctc cgctactacc gagggggctg atgtag                     4006
//
ID   Gypsy-48_LMi-LTR repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-423
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 423 BP; 107 A; 79 C; 75 G; 162 T; 0 other;
     tggcaattac cgttcttctg tgcgtggcag tgtcagtgtt gttaagcagt gcaatgtttt        60
     cacgcgttat tacggcgctg tcaaatgttt ttcgcgccaa ccagaggcgc tgagtttgta       120
     ttttttctat gtgttgttta ttctatggtt ctgtgctttt ttataatttt atatctcttt       180
     gctttcttat taagtgtcct tagttacgag taattagtta cgatcgagac atatctttta       240
     atattaccag tctcagagaa gatttccttt tcacggaaac ttcatataat aattttctcg       300
     atcgctcttc tgtcattcat caagaaaaat aaataatttc cgacgtaaac gtttttgaac       360
     tgattcacaa gttacatagt ctaatcggta aactgattgg tctgccacaa ccaaccggca       420
     ata                                                                     423
//
ID   Gypsy-48_MSe-I repbase;    DNA;    INV; 4420 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4420
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 925-925 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           12..4133
FT                 /product="Gypsy-48_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQETENNSEGRVSPILCTDQNQLRNLLTLQHRNMME
FT                 LMKTFLEPKKKENKIILPEFNPDDQEADAQAWCNTVEICLKDNPSSGSKLI
FT                 MLLSKALKNSAATWLAHNSHPDVTWSELKNLFLFRFDTIETPAATLFKILS
FT                 NNPNDGENMSTYVSRILNTLMTRWNKMTVEEVAISVALAHVSRTDDQIRRM
FT                 AFTTEIKSRVQLQRELMPFVHRKRTLLPSDKTNQSSDAKKARSEPPRRCYN
FT                 CGKIGHISSDCFSNTNKDRNTINRTNPPQTTTNSRQDKETKLVTCYRCGET
FT                 GHIAPHCTQKKRKTEDHEEPTVERRVNVCTIRAAEDHLYNLGEKYSFCFDS
FT                 GSECSLIKETVAQHFPGERNYQLVTLLGIGKSNLRCNTQITATVTLQGYSV
FT                 ELIFHVVPDSSLSNDILIGRDLIGLGFSVEISQYKLTINKSQVIAQCEFGK
FT                 SVINFNSINTDVSSDSLAELKSLVEKYSHFFIEGIPTGKVSSGCLEIKLID
FT                 PSRTVQRRPYRMNPDERELVRKKIKELLIAGVIRESCSPFASPILLVKKKD
FT                 GSDRLCVDYRELNSNTIPDRYPLPLIGDQIQRLVGAKYFTSLDMASGYHQI
FT                 PVHSDSIEKTAFVTPEGQFEYITMPFGLRNAPSVYQRAINKALGSLSETFA
FT                 VCYIDDIIIPSRTIEEGLQRLNLVLEALTNSGFSLNLNKCAFLKTHVNYLG
FT                 YLVTSGELRPNMRKINALIQLPPPQTATQLRQFIGLASYFRQFIQGFSQIT
FT                 APLYRLTAQKGNIKWTPEFENIRQKIITVLTEKPVLTIFDPQCLTELHTDA
FT                 SSEGYGAILMQRKDDKLSVIEYYSRRTTLYESKYHSYELETLAVVNAIKHF
FT                 KHYLQGRKFLVVTDCNAVKASMSKKDLTPRVHRWWCYLQSFDFDIEYRPGK
FT                 QMEHVDFLSRNPVSQMLETKTTQKQVNLTEISDNWFQAEQQKDSEITSIIS
FT                 NLQNDSIDQSVRGTYELRRGILHRKIERNNRSVWLPIVPRSFQWAVINHIH
FT                 ESIMHLGWEKTLQKAYCHYWFPHMNKYVRKFVDNCITCKISKSRSGKVQAE
FT                 LHPIPKVSTPWHTIHIDATGKLSGKNDTKEYVFVMIDSFTKYTLLHHTLNI
FT                 DTNSAIKALKYIVSLFGAPARIIADQGRCFSSKDFKDFCNSHGIVLHLIAT
FT                 GTSRANGQVERVMSSLKNMLTAVEVGNNKSWQDALPDVQIALNSTINRVTK
FT                 SSPLELLIGKVARPLDLMTLEDDTYENNVNLSEARERAAHAIQNSAVTEKE
FT                 RFDRTKARIKHFKEGDFVLLENHERNQTKLEAKFKGPFRVIQLLNGDRYLL
FT                 KALNSNRTYKYAHDRLRAMPECYVPLELNTNLEVHGCADDGKSKYLCSCLC
FT                 DKAVCVTKLSV"
XX
SQ   Sequence 4420 BP; 1460 A; 843 C; 878 G; 1239 T; 0 other;
     tcagaagtgg gatggaccaa gaaacggaaa acaatagtga aggacgtgtc agccctatac        60
     tatgtaccga ccaaaaccaa ttgaggaatc ttttgacact gcaacatcgt aacatgatgg       120
     aattaatgaa aactttcttg gagccgaaga aaaaggagaa taaaattatt ttacctgaat       180
     ttaatcctga cgaccaagaa gcggatgcac aggcatggtg taacactgta gaaatctgtt       240
     tgaaagacaa cccgtcaagt gggagtaaat tgataatgct tctaagcaaa gccctgaaaa       300
     attcggcagc aacatggttg gcacacaata gtcatcctga tgttacatgg tcagaactga       360
     aaaatctttt tctatttcgg tttgatacta ttgaaacacc agccgctaca ttattcaaga       420
     ttttatcgaa caatccgaat gatggagaaa atatgtctac atatgtgtcc cgtattttga       480
     acacattaat gacacgatgg aacaaaatga ctgtcgagga agtcgcaata agtgttgcat       540
     tggcacatgt gtcacgtacg gatgatcaaa ttcgaagaat ggcgtttaca acagaaataa       600
     aatcaagagt ccagctacaa cgtgaactaa tgccgtttgt gcaccggaaa agaactctac       660
     taccttctga caaaactaac caatcaagtg atgctaagaa agcacgttca gaaccaccac       720
     gacgatgtta taattgcgga aagattggcc acatatctag tgattgtttt agcaatacaa       780
     acaaagatcg gaacacaata aatcgcacaa atcctccaca aacgacaacc aactctcggc       840
     aagacaagga gacgaaactt gttacttgtt accgctgcgg cgagaccgga catatagcac       900
     cgcattgtac tcaaaagaaa agaaaaaccg aagaccacga ggaacccact gtagagcgaa       960
     gagtaaatgt ctgcaccatt agggcggcgg aggatcacct ttataatctg ggtgagaagt      1020
     attcattttg ttttgattcc gggtctgaat gttcattaat taaagagacc gtggctcaac      1080
     attttccggg tgaaagaaac tatcaattag ttacactttt aggtatagga aagtcaaacc      1140
     ttcgctgcaa tactcaaatt acagcgacag ttacgcttca aggctattct gttgagttaa      1200
     tattccatgt agttcctgac agctcattga gtaacgacat tttaatagga cgagatttaa      1260
     ttggcttagg gttttcagtc gaaatttcac agtataaatt aaccatcaac aaatctcaag      1320
     ttattgcaca atgtgagttc ggcaaaagtg taatcaattt caatagtata aacactgatg      1380
     tgtcttccga ctccctcgca gaactaaaga gtttagttga aaaatattca cacttcttca      1440
     ttgaaggtat accaacaggc aaagttagct ctggatgcct cgaaataaaa cttatagatc      1500
     ctagtcgaac agtgcaacgt cgtccatatc gaatgaaccc cgatgaacgg gaattagtgc      1560
     gtaaaaaaat taaagaactt cttattgctg gggttattcg ggaaagttgt tcgccctttg      1620
     ccagtccaat attattagta aaaaagaagg acggttccga tcgcctctgc gtagattatc      1680
     gggagttaaa cagcaatact attccagata ggtacccttt acctctgatt ggcgatcaaa      1740
     tacagcgctt agttggtgcc aaatatttta cttccttgga catggctagc ggctatcacc      1800
     aaattcccgt ccattccgac tcgatcgaaa aaacagcctt tgtgacacct gaggggcagt      1860
     ttgaatatat aacaatgcca tttggtcttc gaaacgcacc atctgtctat cagcgagcta      1920
     ttaataaagc tcttggtagt ctttcagaaa cttttgctgt gtgctacatt gatgatatta      1980
     taattccatc acgaactatt gaagaaggtc tgcaaaggct aaatttagta ttagaagctt      2040
     tgacgaattc cggattttct ctaaatctaa ataaatgtgc ttttcttaaa actcacgtta      2100
     actatcttgg atacctggtg acttctggtg agttgagacc aaatatgcgt aaaataaatg      2160
     ctttaatcca actgcctcct ccacaaactg ctacacaact gagacaattt attggtcttg      2220
     catcatattt tcgccaattc attcaaggtt tttctcaaat taccgcgccc ctttacagac      2280
     ttacagccca aaaaggtaac ataaagtgga ccccagaatt tgaaaacatt cgccaaaaaa      2340
     ttattacagt tttaactgaa aaaccagttt taactatttt tgacccccaa tgtcttactg      2400
     aattgcacac ggatgcaagc tctgaaggat atggtgccat tcttatgcaa agaaaagacg      2460
     ataaactttc tgttattgaa tattatagtc gtagaacaac tctttacgaa tccaaatacc      2520
     actcatatga actcgagacg ttagcagtag ttaatgcaat aaagcatttc aaacattatt      2580
     tacagggtcg taaatttcta gtagtaacag attgcaatgc cgttaaagca tctatgtcaa      2640
     aaaaagactt aacgccgcgc gttcataggt ggtggtgtta cctccaaagc tttgatttcg      2700
     acattgagta tagacctgga aaacaaatgg agcatgtaga tttcttatct cgaaaccccg      2760
     tttcccaaat gcttgaaaca aaaactactc aaaagcaggt taatcttacc gagataagtg      2820
     ataactggtt tcaagcagaa cagcaaaagg attctgaaat aacgtcaata atatcaaact      2880
     tgcaaaatga ttccatcgac caaagtgtac ggggaacata cgagctccga cgtggaattt      2940
     tgcacagaaa aattgaaaga aataatcgca gtgtctggtt gcctattgtt cctagatcat      3000
     ttcagtgggc tgtaattaat cacatacatg aaagtattat gcatctgggg tgggagaaaa      3060
     cattacaaaa agcttattgt cattattggt tcccacacat gaacaaatac gtacgcaaat      3120
     ttgtggataa ttgtattacg tgtaagatat caaaatctcg ttcgggtaaa gttcaagcgg      3180
     aattacatcc tattcctaaa gtatctacac cttggcatac tattcacata gatgccacag      3240
     gaaaacttag cggaaaaaat gatactaaag aatacgtatt cgtgatgatt gattcattta      3300
     caaaatatac cctcttgcat catacactta acattgatac taatagtgcc ataaaagctc      3360
     ttaaatatat tgtttctctg tttggtgccc cggctcgcat tatagctgat caggggagat      3420
     gtttttctag caaagatttt aaagactttt gcaattcaca tggtattgtt cttcacctga      3480
     ttgccacagg aactagtcga gctaatggtc aggtggagcg agtgatgagt tctttaaaaa      3540
     acatgcttac agctgttgaa gtcggaaata acaaatcatg gcaagacgct ttgccagatg      3600
     tacagattgc tttaaacagt acaattaatc gagtgaccaa gtcgagtcct ttagaattat      3660
     tgattgggaa agtagcaaga cccctcgatc taatgacctt agaagatgat acatatgaaa      3720
     ataatgtaaa tttatcggaa gctcgtgaac gtgcagcaca tgctattcaa aacagtgcag      3780
     taacagaaaa agaacgattt gatagaacta aggcaagaat taagcatttt aaagagggtg      3840
     attttgtgct tttggaaaat catgagcgga atcaaaccaa attggaagca aaatttaaag      3900
     gcccttttcg tgtcattcag ttacttaatg gtgacagata tttacttaag gcattgaatt      3960
     ccaatagaac atacaaatat gctcacgatc gtttacgtgc tatgccggag tgttatgttc      4020
     cattggaact aaatacaaac ttggaagtcc atggatgtgc cgatgacggc aaaagtaagt      4080
     acctatgtag ctgtctgtgt gacaaagctg tctgtgtgac aaagctgtct gtgtgacaaa      4140
     gctgtctgtg tgacaaagct gtctgtgtga caaagctgtc tgtgtgacaa agctgtctgt      4200
     gtgacaaagc tgtctgtgtg acaaagctgt ctgtgtgaca aagctgtctg tgtgacaagc      4260
     ccctgtatgt aactgctctg ttggcatgac aattattacg tgggattttt attttctgtc      4320
     agtatggccg agcttgttta aatacaaaca taatcttgtt gttttgcaga tcattcatcc      4380
     gatgaaacac acgaggacgt gtgaagacgc aggacggccg                            4420
//
ID   Gypsy-48_MSe-LTR repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-363
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 974-974 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 363 BP; 96 A; 46 C; 94 G; 127 T; 0 other;
     tgacggcgcg ttctttatga ttaaatgaat tatttgattt atttttggac ttccggttgt        60
     ttagttttta tgggaacaag tattcgcgag aaaaatgtca aattatatta tgtttagata       120
     ttataaaata ttgtaattaa aaattagaag gcaaagaggg actgtttggt ccgtgcaggc       180
     ttgcgagtat ggtcagcgcc ggaaatgatt cactttatgc agtaaagtgg gagaaatgta       240
     gtagttgggg tagttggtgc ctttataaag cggtggtgtg cggattggag gatagttcta       300
     tttgtgtcgt gacgctgacc gtatattcgc aattttgcat acctcttgct cggaattcct       360
     gca                                                                     363
//
ID   Gypsy-48_SiCu-I repbase;    DNA;    INV; 4042 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4042
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5069-5069 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..4026
FT                 /product="Gypsy-48_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MGDSSNFSHPPPFSFLPKDWPAWRKRFEHYHMLSKFE
FT                 KESDNYQISALLYAMGDRADEVFSSLKMTEDNKKKYAEVIKEFDKHFVGKK
FT                 NTVYERAVFNSRNQKEGESFEDYVTVLFSLSEHCEYGDLRDDLVRDRIVIG
FT                 VRDKTLSQKLMMEGPSLEKTIDIARQFETVKREHAEIRGXKAKQEVDRVHK
FT                 PFQXGKKFQGHWKEHPQQNERKDQRQDNHHQEXRRDGFKKKTGCFNCGFEG
FT                 HRAKDTDRCPASSVVCHKCQKKGHFAKMCHSKAVGEVNTSRNVKNVFTVSS
FT                 KETERKSRWNAEVXVDRVPVEFKLDPGSDVTLLPYVXWKRKFPKARLKSST
FT                 VRLQGPDGTDLDTVGYFEAELQNKRRSKWEDIFVVKGARNALLGLGACEDL
FT                 GLVKRIEQVGEFHTDVNPRKEFPALFRGLGKMEQEYEIKLKPGAEPFSVSC
FT                 SRRVPLPLMDKLKAELEKMKEMGVIEEVNEPTPWCAPLVLSGKANGGIRIC
FT                 VDLQKLNENVQRELHMLPVVEHELGKLDGARYFSKLDANSGFWQIPLTKES
FT                 AKLTTFITPFGRFFFKRLPFGITSAPEVFQKRMSETLRGIEGVICLMDDVL
FT                 ICGKNQQQHDXRLREVLARLKKSGLTLNEEKCQFGLKRVRFLGHVVDEEGI
FT                 HPDEEKVKAIVELDEPKDVKDVRSLLGFLNYLAKFIPNMSTVLQPLNVLLK
FT                 VDAEWTWDHPQKKAFEXVKKILSSNPVLAKYDAKRETIVSADSSSFGIGAV
FT                 LKQKQDDGTWKPVSYASRTLSGAETRYAQIEKEALAITWACDRFRDFIIGK
FT                 KIQVETDHKPLLAIFKKRELGELTPRLQRFRMRMMHYEFEIFHTPGKELVA
FT                 ADFLSRHPLKSNEEYDLDLEVREHVRHVIANIETSDERLQAIAVEQKEDGI
FT                 LQKVAKXCRDGWPEKCXXDKELRKYFHVRDEISSQEGLLMRGRRLIIPHTM
FT                 RKEVLVRIHEGHQGITKCRVRALECVWWPGISTXIEXMIRRCEVCAQERIA
FT                 KHQPLMPSEFPERPWQKVGMDLFYHDGKWYLVVCDFYSRYPEVVQLQKLTG
FT                 DLLITHLKSIFSRHGVPEIVYSDNGTQFSTKTSGSFQEFAREYGFIHKTSS
FT                 PKFPQSNGFAENSVKIVKNAMKKNDDPLKALMEYRASPLANGYSPAELLFG
FT                 RKIRTTLPCSPKLLKPQEVEHEWLRRWEERRREKQKENFDRRHGAVERKDF
FT                 VKGEKVWVRDRREWGVIVGKXGSPRSFWVQTPSGRYRRNAFHLVAVGKLDA
FT                 LDWDVDIQVPDEPQEEENXDDREAAEEQVPARTHSRYGRQYKSVKRFEATK
FT                 "
XX
SQ   Sequence 4042 BP; 1212 A; 768 C; 1148 G; 875 T; 39 other;
     tggtggcagc ggtgtagtta accgagagag agaaaaaaag ttaccagaga acaattaaat        60
     tcgtgaattt aatttwgaca agtgacaaag atgggagata gtagcaactt cagtcatcca       120
     cctccatttt cctttctacc caaggattgg ccggcatgga ggaaacgatt cgagcattat       180
     cacatgttgt ccaagttcga aaaggagagt gataattacc agatttctgc gctgttgtac       240
     gcgatggggg atcgggctga tgaagtgttc tcgtcattga agatgactga agataacaag       300
     aaaaagtacg ctgaggttat caaggagttt gataagcatt ttgttgggaa gaagaacacc       360
     gtttacgaga gagccgtgtt caactcacgt aaccagaagg agggagagag ttttgaagat       420
     tacgtcacag ttttgttttc kctttcggaa cactgtgagt atggmgacct ccgagatgac       480
     ctggttcgtg acaggattgt gattggtgtt agggacaaga cactttcaca gaagctgatg       540
     atggagggcc ctagcctgga gaaaaccatc gacattgccc gccagttcga gactgtgaag       600
     cgggagcatg ctgaaattag aggtganaag gcgaaacagg aagtggatcg cgttcacaag       660
     ccgttccagm aagggaagaa gttccaaggg cattggaaag agcatcccca gcaaaatgag       720
     aggaaggacc agcgacaaga caaccaccac caggaggasa gamgagacgg wtttaagaag       780
     aagaccggat gtttcaattg cggattcgaa gggcaccgag caaaggatac ggatagatgc       840
     ccagccagtt cagtcgtttg tcacaaatgc cagaagaagg gacattttgc caaaatgtgc       900
     cacagcaaag cagttggtga ggtgaacacc tccagaaatg tgaaaaatgt tttcacagtc       960
     agcagcaaag aaacagaaag gaagagccgg tggaatgcgg aagtccwagt ggatcgagtt      1020
     ccagtsgagt tcaaactgga tccmggatct gatgtgactc tactgccgta tgtggaktgg      1080
     aaaaggaagt ttccmaaagc aagattgaag tccagcaccg tgcgtcttca aggtccagat      1140
     ggaactgacc tggatactgt gggwtatttt gaggcagagc tgcagaacaa gaggaggagc      1200
     aaatgggagg atatttttgt ggtcaagggt gcacgaaacg cacttctggg acttggagca      1260
     tgtgaagacc ttggactggt gaaaaggatc gagcaagttg gcgagttcca cacggatgta      1320
     aatccaagaa aagagtttcc agccctgttc agaggtctag gcaaaatgga gcaggagtac      1380
     gagataaagc tgaaaccggg agccgagcca tttagtgtaa gctgttccag gagagtccca      1440
     ctcccactta tggacaaact aaaagctgaa ctggaaaaga tgaaggaaat gggagtcata      1500
     gaagaggtca acgagccaac accgtggtgt gcaccgttag tgctatctgg aaaagcaaac      1560
     ggagggatca gaatttgtgt tgacctgcaa aagttaaacg agaatgtgca aagagaattg      1620
     cacatgttgc ctgttgtgga gcacgagctg ggaaagttgg acggagcccg ttacttttcc      1680
     aaactggacg cnaattcggg attctggcag attccactga cgaaggaaag tgcaaagttg      1740
     acmactttca ttacgccatt tgggaggttt ttcttcaagm ggttaccctt tggcatcack      1800
     tcagcaccgg aagtcttcca gaagcggatg agcgagacgc tgagaggaat tgaaggagtc      1860
     atttgcctga tggatgacgt gctcatttgt gggaaaaatc aacagcaaca tgacgasaga      1920
     ttacgagaag tcttggcaag attgaagaaa agtggattga ccctcaatga agaaaaatgt      1980
     caatttggat tgaagcgagt caggttcctg ggacatgtgg tggacgaaga aggaattcac      2040
     ccagacgaag aaaaagttaa agccatagtg gaattggacg agccaaagga cgttaaggat      2100
     gtgcgctcat tattgggatt cttgaactac ttggcgaagt ttatcccaaa catgtcaaca      2160
     gtgctwcagc cgttaaatgt actgctgaaa gtggatgctg aatggacctg ggaccatcca      2220
     cagaagaaag cttttgaagm agtgaagaag attttgtcca gtaaccctgt gcttgccaag      2280
     tacgatgcca agagagaaac tatcgtgtca gctgactcat cgtcattcgg aattggagca      2340
     gttctgaaac aaaagcaaga tgatggaacg tggaagcctg tgtcgtatgc gtcgcgaacg      2400
     ttgtctggag ccgaaacaag atacgctcag atagagaagg aagcacttgc satcacttgg      2460
     gcatgtgatc gtttcaggga ttttattatt ggcaagaaga tccaggtgga gacagaccac      2520
     aagccgttgt tggccatctt caagaaacga gagttaggcg agctgacacc acgactccag      2580
     agattcagga tgaggatgat gcactacgag ttcgagatct tccatactcc agggaaggag      2640
     ctggttgcag cagatttttt gtctcgtcat cctctcaaaa gtaacgaaga gtacgatttg      2700
     gatttggaag ttcgtgagca cgtgaggcac gtaattgcca atattgagac gtcagacgag      2760
     cgcctgcaag cgattgcagt ggaacagaaa gaggatggaa ttttgcagaa agtagccaag      2820
     twctgtcgtg atgggtggcc agagaaatgt gamgamgaca aggagttgag aaaatacttt      2880
     cacgttcgag atgagatttc cagtcaagaa ggattgctaa tgagaggacg tcgtctcatt      2940
     ataccccaca cgatgaggaa agaagtactt gtgcggatac atgaaggtca tcaagggatc      3000
     actaaatgtc gagttcgkgc actggagtgc gtwtggtggc ctggcatttc aacggamatt      3060
     gaagamatga ttcgtcgttg cgaagtttgt gcgcaggagc gcattgccaa acaccagccc      3120
     ttgatgccaa gcgaatttcc cgagagacca tggcagaaag ttggaatgga tttgttttac      3180
     catgacggta aatggtacct ggtagtatgc gacttttact ccaggtaccc agaagtagtc      3240
     caactacaga agctgaccgg tgatttgctg atcacccacc tgaagtccat cttttctcgc      3300
     catggagttc cagagattgt gtacagtgac aatgggacac agtttagcac gaagacgtcg      3360
     ggatcgttcc aagagtttgc ccgtgaatac ggattcattc acaagacgtc gagtcccaag      3420
     ttcccccagt caaatggatt tgccgagaat tccgttaaaa twgtgaagaa cgcwatgaag      3480
     aagaatgacg accckttgaa agcgctgatg gagtacagag catcgccgtt agcaaatgga      3540
     tactccccag ctgagctgtt gttcggmagg aagatccgaa cwacattgcc gtgcagtccw      3600
     aagttgctga agcctcaaga agtggaacac gagtggttac gacgctggga ggagcgtcga      3660
     cgagagaagc aaaaggagaa tttcgaccgt cgtcacggag ccgtcgagag aaaagatttt      3720
     gtgaaggggg agaaggtatg ggtcagggac agacgagaat ggggagtcat cgttgggaaa      3780
     gstggatctc caagatcatt ctgggtgcag accccgagcg gaaggtaccg aaggaacgct      3840
     tttcaccttg tcgcmgttgg aaagttggat gcattggact gggacgtgga catccaagtt      3900
     ccagatgaac cacaggagga ggaaaaccaw gatgatcgag aagcagcgga agagcaagtt      3960
     cccgccagga cgcacagccg ttacggacgc cagtacaaga gcgtcaaamg atttgaagct      4020
     actaaatagc tttgagggga ga                                               4042
//
ID   Gypsy-48_SiCu-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-283
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5125-5125 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 283 BP; 79 A; 34 C; 75 G; 93 T; 2 other;
     tgtggcggga tgtataaagt agagtaccat gtggcatgtg gctgcaatga gatgggagtt        60
     ggttgcagtc gcggtcagtc agtagtcagt cgtactagag agttggtctk agtaatttgt       120
     acttgtctca taataatggt tgtattaata aagataatta atgttgttaa ttatamttgt       180
     ggttgtcctg attagcattg atttagcgaa acgtagttag cttgtagtta gtcagtaggg       240
     attaactaac agcgtgttgg agtagataac acccaacatt aca                         283
//
ID   Gypsy-48_SpEx-I repbase;    DNA;    INV; 4867 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4867
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4116-4116 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..4140
FT                 /product="Gypsy-48_SpEx-I_1p"
FT                 /translation="MTLVQAMKTPSTSELRLPDFDPDKRDVDARAWISTAD
FT                 LCISDQHQQGTHLMVALSRALKGHASTWFSTISYPGMNWYDFKELFKARYD
FT                 CPETVASFLINLNESKPKENECVAAYAASLMTSIMARWKNLPTEELAIATV
FT                 LAHLSRFDRRIQRLSFTTDVKTRNQLQQELKAVSFFKRKANANDLDVPDTK
FT                 KNRSTCPTTPVKCYYCGKMGHKSTMCQSRRRDNMKRRDEHPRPQLGNNDNS
FT                 KPNQTKPAAVTCYHCQGSGHYASSCPKRRSQEGTSGAGASNVKRVNLCVRS
FT                 VPTGTMRIAGEPYSFHFDSGAECSLVKETVSQRLNGRRLNNTVTLIGLGQT
FT                 PVYCTSQILTVVEIDNINLEILLHVLLDQYLQHNIVVGHEILLLGLAAHIT
FT                 ASQLRFSKNQIVQLCHVSPTDQGINPDTVDTDVPPEYKGQLLDLLKSFEQS
FT                 FSRGVPAKCADTEPMEIRLKDPHKTVNRRPYRLSTQERQVVREKVSELLDA
FT                 GIVRPSSSPFASPILLVKKKDDSDRLCVDYRELNDNTIPDRFPLPLISDQI
FT                 ARLHGGMYFSTLDLTSGFHQIPVAADSIERTAFVTPDGQYEYLRMPFGLKN
FT                 APAVFQRAIIKALGDLVNTYVVVYMDDVLIMASTVEEALERLKIVLEVLTE
FT                 RGFSLNMKKCKFLKQKVEYLGFEVCQGEIRPNQRKVEALTALPPPETVTQL
FT                 RQFIGLASYFRQFVPQFSQVMAQLYALTSSSNNGKLVWKAEHEAIRQQIIA
FT                 ALTSEPVLLIFDPDLDTELHTDASAIGYGAVLMQRKAGKLHAVAYYSKRTT
FT                 AAESRYHSYELETLAVVNAIRHFRHFLHGRKFVVVTDCNSLQSSRKKLDLA
FT                 PRVHRWWAFLQSFDFDIVHRGGKHMSHADFLSRNPVPSDKVVSQKPANKVE
FT                 PKRINLTELTGNWLLAEQQKDVEISKLVIDLNDNKLPDDVAKTYELRSGLL
FT                 YRKVQRNGKTRCLPIIPRSLRWSIINGVHESLMHLGWEKTLEKVFELYWFE
FT                 HMTKYVRRFVENCVTCRISKSNSGKVQASMHPIPKVAIPWHTVHVDATGKL
FT                 SGKNDKKEYVFVLVDAFTKYVLLYHTLNIDTASSIRAVKQSVSLFGAPTRL
FT                 IADQGRCFASRDFKEYCESVNIKLHLIATGSSRANGQVERIMSTLKNMLTA
FT                 AETGSRSWQDALPDVQLALNCTQNRVTKASALEMLIGKIARPLELMLADDE
FT                 EPVTDLEQVRAEAVQNMTDSAGYDKRRFDSSKAKVQPFSVGDFVLLQNEER
FT                 NQTKLDPKYKGPFKVIEVLEGDRYVLKALNSNRTYKYAHDRLRKMPDGICE
FT                 IDDADSDDHDSDQ"
XX
SQ   Sequence 4867 BP; 1356 A; 1112 C; 1188 G; 1211 T; 0 other;
     tcagaagtgg gattggaaaa ccacgcgcca cgtgcaaagg acaacgaccc accgagtgtt        60
     gaaaatcacg atgccgctgc aaataacgtt tcaccacgtg caataaataa cgacgcagac       120
     gatagaagat ggcatctact tttggaacag cagaaccgga attttatgac ccttgtgcaa       180
     gctatgaaga cgccttcgac cagtgagcta cgcctgcccg atttcgaccc tgataaacga       240
     gatgtcgacg cacgtgcttg gatatcgacg gctgacctct gcatcagtga ccagcatcag       300
     caaggtacgc accttatggt ggctttaagt cgtgcgttaa aggggcatgc ctccacgtgg       360
     ttttcgacga tttcataccc tggcatgaac tggtatgatt tcaaggagct ttttaaagca       420
     agatacgact gtcccgaaac tgttgcttca tttttaatca acctaaatga aagcaagcct       480
     aaagaaaatg agtgtgttgc tgcatatgct gcctccctta tgacgtcgat tatggccaga       540
     tggaaaaatt tacccaccga agaactggct atagctactg ttcttgcaca tttgtcacgt       600
     ttcgaccgac gtattcaacg actttcgttt acaaccgacg tcaagacacg caatcaattg       660
     caacaagaat tgaaggcagt atcttttttt aaacgtaaag ccaatgcgaa tgaccttgat       720
     gtgcctgata ccaagaagaa ccgcagcact tgcccaacaa ctcctgtgaa gtgctactac       780
     tgcgggaaga tgggacacaa atctaccatg tgtcagtcac gtaggaggga caatatgaag       840
     aggagagacg agcaccctag acctcaactg ggcaacaatg ataacagcaa gccaaaccag       900
     accaaaccag cggccgtcac ctgctaccac tgccaaggga gcggccacta cgcgtcgagc       960
     tgtccgaagc ggcgcagcca ggaagggacc agcggagcgg gcgcctccaa cgtgaaaagg      1020
     gtcaacctgt gcgtccggag cgtgcctact gggaccatgc gtattgctgg tgagccttat      1080
     tcatttcatt ttgattctgg agctgagtgt tcacttgtaa aagagactgt gtcacagaga      1140
     ctcaacggac gacgactcaa taatacagtg acattgattg gtttaggtca gacccctgtt      1200
     tattgcacat cgcaaatact gacagtcgta gagattgaca acatcaattt agaaattcta      1260
     ctgcatgttc tgcttgacca gtatctgcaa cataacatcg tagtaggtca tgagattttg      1320
     ctgttaggtt tggctgcaca tatcactgct tcgcaactga gattttccaa aaatcaaatc      1380
     gttcagttgt gccatgtttc gccaactgac caaggaatta atccggacac ggtggacacc      1440
     gacgtcccac ctgaatacaa aggtcagtta cttgatttgt tgaaatcatt tgagcagtct      1500
     ttttcaagag gtgtgccagc gaaatgcgcg gatactgaac ccatggagat tcgcctaaag      1560
     gatccacaca agactgttaa tcggcgacca tatcggctga gcactcaaga gcgacaagtt      1620
     gttcgagaaa aggtaagcga gcttctagac gcaggcatag ttcgtcctag ctcgtcacca      1680
     tttgcaagcc caatacttct agtcaagaag aaagatgatt ccgacaggct ttgcgtggat      1740
     taccgcgaac tgaatgacaa cacaatacct gacagattcc cgctaccact catctccgac      1800
     caaattgcta ggttgcacgg aggtatgtac ttctccactt tggatctcac atcgggcttt      1860
     catcagatcc ctgtcgcagc tgattccatc gaacgaactg cgtttgtaac accagacggc      1920
     cagtacgagt atctcagaat gccgtttggc ctaaagaacg cgccagcagt tttccagcgc      1980
     gcaatcataa aagctctcgg ggatctggtg aacacctatg ttgtggtcta tatggacgac      2040
     gtgctgatta tggccagcac tgtagaggaa gcgctggagc gactgaagat cgtgctagaa      2100
     gtcctcactg aaaggggatt ttctctcaac atgaagaagt gcaagttcct caaacaaaag      2160
     gtggagtatt tgggatttga ggtgtgccaa ggtgagatac gccctaacca gcggaaagtg      2220
     gaagctctta ctgctctgcc acccccggag actgtgacac agttacgtca attcattggc      2280
     ttagcatcat actttcggca gttcgtgccc cagttctcgc aggtaatggc tcaactctac      2340
     gcacttacct cgagctcgaa taatggaaag cttgtctgga aagctgaaca tgaagctatc      2400
     agacaacaaa taattgctgc actgactagc gaaccggtat tgcttatttt cgatccagat      2460
     cttgacacgg aactgcatac cgacgcaagt gcgatcggat acggcgcagt tctaatgcag      2520
     agaaaggctg gtaagttgca cgctgttgcc tactacagca agcgtacgac ggccgctgaa      2580
     tcgcggtacc actcctatga actggagacg ctagcggtcg tcaacgcaat taggcatttt      2640
     aggcatttcc ttcatggacg aaaatttgtt gtcgtgacag actgcaattc acttcaatcc      2700
     agcagaaaga agttggacct ggccccacgt gttcatagat ggtgggcttt tctacagagt      2760
     ttcgactttg atatcgtgca ccgaggagga aaacacatgt ctcatgcaga ctttttgtcc      2820
     agaaaccctg tcccgtccga caaggtagta agtcaaaagc ctgcgaataa agtggaacca      2880
     aagcgcatca atttgaccga attgaccggt aactggctcc tggctgagca acagaaagat      2940
     gttgagattt ctaagcttgt tattgacctg aacgataaca agcttcctga cgacgttgcg      3000
     aagacgtacg agctacgctc aggactttta taccggaagg tacagcgtaa cggtaagact      3060
     cgctgcttgc ctatcatacc tcggtcgctt aggtggtcga tcatcaacgg cgtgcacgag      3120
     agcttgatgc acttggggtg ggagaaaacg ttagagaagg tgttcgaact ttactggttc      3180
     gaacacatga cgaagtatgt gaggcgtttc gttgagaact gcgttacatg cagaatctca      3240
     aagtcgaatt caggtaaggt tcaagcatcc atgcacccta ttccaaaagt tgcgatacct      3300
     tggcacactg tgcatgttga tgcaacagga aaactcagcg gaaagaacga caagaaggaa      3360
     tatgtgttcg ttctagtcga cgccttcaca aagtacgtat tgctgtacca taccctgaat      3420
     atagacactg ccagcagcat cagagccgtg aagcagagcg tctcactttt tggtgcccct      3480
     acgcggctaa ttgcggatca aggacgatgc ttcgcaagca gagacttcaa agagtactgt      3540
     gagtctgtaa acattaaatt acacctcatt gcaaccggaa gctctagggc caacggccag      3600
     gtcgagcgca ttatgagcac tctaaaaaat atgctgaccg ctgcggaaac cggtagccga      3660
     tcgtggcagg atgcgttacc cgacgtgcag ctcgctctaa attgcactca aaatcgggtg      3720
     actaaggcaa gtgcactgga gatgctcata ggcaagattg caaggccgct ggagttgatg      3780
     cttgctgacg acgaagaacc tgtaacagat ctagaacagg taagagctga agcggttcaa      3840
     aacatgactg acagcgctgg atacgacaaa agacggtttg atagcagcaa ggctaaagtc      3900
     cagccgttct ctgttggaga ttttgtcctg cttcagaacg aggaacgcaa ccagactaag      3960
     cttgacccca agtacaaagg accttttaag gttattgagg tgttggaagg cgaccggtac      4020
     gtgctgaaag ctttgaacag caatcgtaca tacaagtacg cacatgaccg tctgcggaaa      4080
     atgccagatg gtatttgtga aattgacgat gctgacagtg acgaccatga ctctgaccag      4140
     tagtttcatt aagaaaaggg ccatggaaca atattttttt tcgtgatgtt tggtgaaatt      4200
     ctcgatttta cttgtttact ttaagtgtgt aagtgactta gacgcttaag agcggttgtc      4260
     tagaatgggc tgaaatcgga cgcctgtatg tggttgtctc gaactgtcgc tatcagacac      4320
     tgataactga agaggttgtc ttgaaaagac aatgacacga tcagacgctg tgaaggttgt      4380
     cttgaagtgt gcaacacgat cagacgctgt gaaggttgtc ttgaagtgtg caacacgatc      4440
     agacgctgtg aaggctgtct tgaagtgtgc aatgtggtta aggtgcagct gtcttgatgt      4500
     attccatcag acgccagtcg gggttgtcta gaagaatact atcagacgct cacgagagta      4560
     tttttgaaat tatgtgttgc ttggttactg tttcatagcc agccatgcaa acatttgtaa      4620
     acactagaat tcttgtttct ccctgtaaac gcttagcaaa ttggaatagt ttgtatcgta      4680
     atttaatgct agacgcagtt atgattactt ttcctgtaca cctttgtaaa tattgcactt      4740
     tcttgcattt ttgtttttca agctaaccct tactttagtc aggctgaccg agcaagagtt      4800
     gtgctactgc tttgagtttt cttttcagat accccacacg aggacgtgtg aaacgtcaag      4860
     atggccg                                                                4867
//
ID   Gypsy-48_SpEx-LTR repbase;    DNA;    INV; 529 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-529
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4177-4177 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs. This family is often
CC   inserted in (TA)n microsatellites.
XX
SQ   Sequence 529 BP; 141 A; 109 C; 122 G; 157 T; 0 other;
     tgtcggagca cgcgacagta gcgccacact tggccggatc ggctagttgt agaacttatg        60
     ttgtaatctg tcaacatagg ttttcgttta aaaatcaaac cataggcagt atcttttctt       120
     tttcttttat tggttgcgtc aagtatccga acttgggcgt agtcgatacg tggctggctg       180
     gttgggccat attgtggcca tagactaact gtcaatttgt aacctcatgt tggtactgtg       240
     aaaaaaaaaa ggaatgctgc gaaccttacg agattgacgt cctgccgtgg atggaaaatc       300
     aaaaaaacgt gaagattcat ttttcagatt gcgacggcaa aactgtcgag ttagtcagcc       360
     ccgtgtcgaa ttcgccgcgc aaccaaagtg tatccgtttg catctcgatt atcgtgatta       420
     ttcaagaatt gtaattgctg gcaaataata aaagcctgat catcgtaaat tacgttttat       480
     ttctggaatc tacgccatta tggagcctca gcgcctggat gccccgtca                   529
//
ID   Gypsy-48_TrVa-I repbase;    DNA;    INV; 4860 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4860
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 293-293 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           351..4736
FT                 /product="Gypsy-48_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPLEPQDVSNSGSSQSQSNSCSAPMVNSSCPPMCLKG
FT                 DLSQRWKDWYAQFDIFMIASNLNSEKDERKNALLLHFIGREVYPIFKSFKL
FT                 NINEVSFNDLVKKFESQFTPKVNVTVERITFFHRRQQLNETIEQYATVLRN
FT                 LSLQCNLGTLQDSITKDIFIGGLNEEHHFIKEKLIMEEKSTLEEVLALSQK
FT                 LKLSKEQSNYLTSEVNVCNVRPHQKSMSYRKSQRSSRSATHKNPSVSHFSG
FT                 PSGDRPNVSQSNWNGKRHFSSSSSGQSFNNKSHASSSSQVSSKSSSCPITN
FT                 RISVCANCGQTSHRFKCPAENVNCNKCNKLGHFSKFCINRKFNNLNVEDND
FT                 ECAEFNDSNYDNSEDDGNDDVLFVGMLNVGTNSSTISNKKWFVTVECNNVL
FT                 LKAQVDTGAQTNMISFANLCKLNVPSHNINQTLNKIVTIDGREIDVIGEII
FT                 LNLNFNHKTYSCKFHVADFNCETVLGLNVVMRMDLIKVIGSMSNVESKDEV
FT                 NNLCQKYNKVFKGIGLLKDYEVNLQIDSKVEPKCDPPRRVPIKILKELKNH
FT                 LNDLVNLNIIEKIEYYTPWVSSIVITRKKNDSIRLCLDPRNLNKAILRPTH
FT                 YIPDTNYVRSELRNAKYFSKLDISSGFWNLKLNKSSSDLCVFNTPFGRYKF
FT                 LRLPFGINASSEIFQGAVYEKFKDIKNLIIYVDDFLIYTKTREEHNKILQQ
FT                 VLQRACETGIKFNLPKCKFFKKELDFLGEIYSENQIKIDPNRIEAIQKMSP
FT                 PKNVTELQRFLGVINYVHSFIPNLSQKTENLRKLLKKNNLWEWSEVHNKEF
FT                 EILKSIIVSNPVLTNYDVNKQVVLSVDASKDALGAVITQDDKPIAYASSTL
FT                 TQSQQVWGQIEKELLAIYFGCNKFNDYLYGQKVIVHSDHKPLETLFKKNYK
FT                 DIPIRLQRIMLKLERYDIDVTWVPGKKLVIADTLSRAPLLNNILNSKELQD
FT                 ELNCQIALLDVKLSASISDAKLKEYKTETEKDESLCVLKNYFLCGWPETKS
FT                 KVHVLAKPYFNIRHQIYVKDDLLFNLDSIIVPSALRSQVLSVIHEGHLGYN
FT                 SSLRRAKNIVFWPFMNSDIKNVIDNCPVCIKYSNSNPRQPLTPHEVSLLPW
FT                 EKIGIDLFEFNSEKFFIAVDYFSKYPEVISLKNATSAKFVIKVLKSIFARH
FT                 GIPLNVMSDNGPPFNAKEFNDFLTEWNINHVTSSPNYPQSNGLVERTIQTV
FT                 KKLMKKCAETNQDFHLALLNFRNTPKQDGPSPNQLLMSRQVRTKLPCSKQL
FT                 LKPNVINFKNYEKTLTNRQNSMINRTKHLKPLSELKVNDQVYFQKTPKDVW
FT                 IKAKVKEKCKEPNSYLLITPNDKTFRRTRAHIKAVTKNVSFNCDTPTSISE
FT                 KVSEKRVINEPSVLKIPIVPSNRSVELNPKYSRQSPEIIDLASETEIYSTP
FT                 TASPLIQGTPKMPVSVKPNRSLGRGLRNNTVRPVGKREVKPPKKFSPN"
XX
SQ   Sequence 4860 BP; 1593 A; 853 C; 818 G; 1596 T; 0 other;
     tggtgtcagg tcgcgggtcg ttattttaat cgtttgacaa ataaatctgt ttgttcgtgt        60
     cgtagatgtc ttcgtttttt tttcttctcg tcggtaacca catctcgaca cacctcgtgc       120
     atcgccatgc tcaccgcctt cattttaaat ggtataagtc agtataatta agtctcatca       180
     gtctgtgtcc acacattttc tagtcaaaat aatgtaattt tattcgtgtc tgtgtctgtt       240
     tcgtgtcttc ggtcatctag tctagtctta ttcgttttcg cttgtcgcgc ccgtgtctac       300
     ctggtctttc tttgttcgtc gtttggtgtc tcgtgtctgc ctacgtcgca atgccgttag       360
     aaccccagga tgtctcaaat tcgggaagca gtcaaagtca gtccaattct tgctcagctc       420
     caatggtcaa ttcatcatgt ccacctatgt gtctcaaagg tgatctgtct caaagatgga       480
     aagattggta tgctcaattt gatatattca tgatagcgtc taacctcaac tcggagaagg       540
     atgaacgtaa aaatgccctg ctcttgcatt tcatcggcag agaagtctat cctatcttca       600
     aatctttcaa actaaacatt aatgaagtca gtttcaatga tttagtcaag aaatttgaaa       660
     gtcaattcac acctaaagtg aatgttacgg tcgagcgaat tactttcttt catcgtcgtc       720
     aacaattgaa cgagaccatt gagcaatatg ctacagttct gagaaatttg agtcttcagt       780
     gcaatttagg tactttgcaa gatagtatca caaaggatat cttcattgga ggactcaatg       840
     aggaacacca ttttatcaag gaaaagctca tcatggagga aaagtctact ttggaggaag       900
     tcctagctct ttcccaaaaa ctgaaattgt ccaaggaaca gtctaattat cttacttcgg       960
     aagtcaatgt ctgtaatgtt cgtcctcatc aaaagtcaat gtcatacagg aagtctcagc      1020
     gaagttctcg atcagccacg cataaaaatc cgtctgtcag tcatttctct ggtccaagtg      1080
     gagatcgtcc taacgtaagt caatccaact ggaacggaaa acgtcatttt tcatcttcgt      1140
     cttcaggtca gtctttcaac aataaatctc atgcttcatc atcttctcag gtatcttcta      1200
     aatcaagctc atgtccaatt accaaccgta tatcagtttg tgctaattgt gggcaaactt      1260
     cacatcgttt caaatgcccg gctgaaaacg ttaattgtaa taaatgtaat aaattgggtc      1320
     atttttcaaa attttgtatc aatcgcaaat ttaacaatct caatgtcgaa gacaatgatg      1380
     aatgtgctga atttaatgat tccaattatg ataatagtga ggatgatggt aatgatgatg      1440
     tcctttttgt tggtatgtta aatgtaggta ctaattcaag taccattagc aacaaaaaat      1500
     ggtttgtaac tgttgaatgt aataatgttt tacttaaagc ccaagtagac acgggggcgc      1560
     aaacgaatat gatttctttt gccaatttat gtaaattaaa tgttccgtca cacaatatca      1620
     accaaactct caataaaatt gtaacaattg atggtcgaga aattgatgtc attggtgaaa      1680
     tcattttaaa tctaaatttt aatcacaaga cttattcgtg taaatttcat gttgcagatt      1740
     ttaattgtga aacagtgtta ggtcttaatg tggttatgcg catggatctt attaaagtca      1800
     tcggttcaat gtctaatgtt gaatcgaagg acgaagtaaa taatttgtgt caaaagtata      1860
     ataaagtttt taaaggcata ggtcttctta aagattatga ggtcaattta caaattgaca      1920
     gtaaagttga gcccaaatgt gatcccccta ggagagttcc aataaaaatt ttaaaggaac      1980
     ttaaaaatca tttaaatgat cttgtaaatc taaatataat tgaaaaaatt gaatattata      2040
     ctccttgggt cagttctatt gtcattactc ggaagaagaa tgactctatt cgattatgtc      2100
     tagatcctag gaacttgaat aaagccattc ttcgcccaac tcactatatt cccgacacaa      2160
     attatgtgag atctgaatta agaaatgcca aatatttttc aaagctagac attagcagtg      2220
     gtttttggaa tttgaagtta aataagtcta gttccgattt atgtgttttt aatactccct      2280
     ttgggaggta caaattttta cgtttgcctt ttgggataaa tgcctcgtcc gaaatctttc      2340
     aaggtgctgt ttacgaaaaa tttaaagata ttaaaaatct catcatttat gtggatgatt      2400
     tcttaattta taccaaaact cgtgaagagc ataataagat tttgcagcag gtcttacagc      2460
     gtgcttgtga aacaggcatc aaatttaatt tgcctaagtg taaatttttc aaaaaagaac      2520
     ttgatttttt aggtgaaatt tattctgaaa atcaaataaa aattgatcct aaccgtattg      2580
     aagctattca aaaaatgtct ccaccgaaaa atgttactga attgcaaaga tttttaggtg      2640
     ttatcaatta tgtccattct ttcattccca atctttcgca gaaaactgaa aatttgcgta      2700
     agcttctgaa aaagaataat ctttgggagt ggtctgaagt ccacaacaaa gaatttgaaa      2760
     ttttaaaatc aattatagtt agtaatccag ttttaaccaa ttatgatgtc aataaacaag      2820
     ttgttctatc ggttgatgca tctaaggacg cattaggtgc tgtcatcact caagatgata      2880
     aaccgatagc gtatgcttcg tctactttaa cacagtctca acaggtttgg ggtcagattg      2940
     aaaaggaact tctagcaatt tattttggtt gtaacaaatt taatgattat ttgtacggtc      3000
     aaaaggtcat cgttcactct gaccacaaac ccctcgaaac tttgttcaag aaaaattaca      3060
     aagacattcc aattcgtttg caaagaataa tgctgaagtt agaaaggtat gatatagatg      3120
     tcacttgggt gccaggtaaa aaactggtca tagctgacac tctgagtaga gcgcctctct      3180
     taaataacat tttaaactct aaagaattgc aagacgaatt gaattgccaa attgctttgt      3240
     tagatgttaa attgtcagcg tctatttcgg atgcaaaatt aaaagagtac aaaactgaaa      3300
     ccgaaaaaga tgaatcttta tgtgttttaa aaaattattt tttatgtgga tggccggaaa      3360
     caaaatccaa agttcatgtt ttagccaaac cttattttaa cattcgtcac caaatttatg      3420
     tgaaagatga tttattgttt aatttagatt ctattattgt tccttccgct ttaaggtccc      3480
     aagtcttatc cgtcattcac gaaggtcatt tagggtataa ctcatctctg cgaagagcga      3540
     aaaacatagt gttttggccc ttcatgaatt ctgatattaa aaatgtaatt gataattgtc      3600
     ctgtctgtat caaatattct aattctaatc caagacaacc acttacaccc catgaagtgt      3660
     ctcttttgcc atgggaaaaa attggtattg atttatttga atttaactcg gagaagttct      3720
     tcatagcagt tgattatttt tccaagtatc ctgaagtaat ttcattaaaa aatgctacaa      3780
     gtgctaaatt tgtcattaag gttttaaagt caatttttgc tcgccatggt atcccattga      3840
     acgtaatgtc cgacaacggt cctccgttta acgctaagga attcaatgat tttttaactg      3900
     agtggaatat caatcatgtg acatcctctc ccaactatcc acaatctaat ggtctagttg      3960
     aacgcactat ccaaacagtt aaaaaattaa tgaaaaaatg tgctgaaact aatcaggatt      4020
     ttcatctagc cttgttaaat tttcgaaaca cccccaaaca ggatggtccc tctcctaatc      4080
     aattacttat gtcaagacag gttagaacta aactcccatg ttcaaaacaa ttattaaaac      4140
     caaatgttat taattttaag aattatgaaa aaactttaac taatagacag aattctatga      4200
     ttaatcgcac aaaacacctg aagcctctca gtgaacttaa agtgaacgat caagtttatt      4260
     ttcaaaaaac acccaaagac gtttggatta aagccaaagt gaaagaaaaa tgtaaggaac      4320
     ctaattcgta tttgttaatt actcctaatg ataaaacctt caggcgcact cgtgctcata      4380
     ttaaagctgt cacaaaaaat gtatctttta actgtgatac tcctacctct atctctgaaa      4440
     aagtttcaga gaaacgtgtt ataaatgaac catctgtatt gaaaatccca attgtaccat      4500
     ccaatcgaag tgtagaatta aaccccaaat attctagaca gtctccagag atcattgatt      4560
     tagcatcaga aactgaaatc tattcaactc ctacggcatc accattaatt caaggtactc      4620
     ctaaaatgcc agtctctgtt aaacctaatc gatcgttagg taggggtctt aggaataaca      4680
     cagtgcgtcc tgtcggtaaa agagaagtga aaccaccaaa gaaattttcc cctaattaat      4740
     atttttgtta ttacctgtgt atgtattttt atatgaataa tttttaagaa ctgttattat      4800
     gtatgctcgt tgtgataaat ctttttttaa aaaaaaaaaa aaaaaaaaaa aggaagatgt      4860
//
ID   Gypsy-48_TrVa-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-48_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 352-352 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 54 A; 27 C; 28 G; 63 T; 0 other;
     tgttagtaat cttaagttgg caactatttc atgttagtgt atttgccact aggttggcaa        60
     caatgttttg aagatctaag aaataaaata tggcctgact agccgatggt gtggtcacta       120
     aattctcgac attattattt attttatcca tctccaacat taataattaa ca               172
//
ID   Gypsy-490_AA-I repbase;    DNA;    INV; 5466 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-490_;
KW   Gypsy-490_AA-I; Gypsy-490_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5466
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5466
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (15-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5466 BP; 1590 A; 1133 C; 1403 G; 1340 T; 0 other;
     tttggcgtat cctgccagcc gaattttaaa gaagtgaaaa ttgcaaatgg ataataatca        60
     tcggactaat aaaaagaatc actcatgaat tgacacaaaa aaaggttttc caagggtctg       120
     agtatccgcg tttgagagta cgacaaaatg gcgtttattt tattttcgct gcattcggtg       180
     tttgccacgt gtggaaggca ttgttcattg aaagtgttag tgcataagtg agctgaaatg       240
     aaatcattcg gaaaatgttg atggctaaga tgcatacata atcaatttgc gaggagattg       300
     caatccaatg tagaagagtt ttttcttgga tgaatgtgtg taatcaagat tggtatggtt       360
     ggcgcgttga gatagcagca ctatattgtg cagcttgtgt gaccaggatg agctcattaa       420
     gattattgta agatgcccga tgtgtgtgtg attcgtggtg actactgcaa gcgcgtcgag       480
     ataaccgcag aatttgaaat aaacacctta aagtgcgtga gctcgagatg accacattcg       540
     acgagttgag ataaccgcaa agtttcaaaa tgattatcag tgtgtgtttt cgagcgtgtt       600
     gagatgaccg catactcttg tttgtgtgat tgagatgacc gcccagatct gcataagacg       660
     aatgagttgt tgatgtttga gtgtgttcga gatgaccaca atatttatgt gaagagaaat       720
     attgtttgat atactacgtt acaatgcgag agttctgaag taaaatggct gtcaaatgaa       780
     atgcagagct tagaatatcg aaaacagatt ctaataggga aataacaagt ttgtggtgag       840
     cctccagttt gatatcgatt gtttgtcaac tttcaggaaa aaaaacacac cctaaggaaa       900
     ccaaaatggc agacggaaaa tacgtacgag caccccaata cgattcagac tcagaagata       960
     ataattcttt cgagagtgat gtgcagcccc acgacccggc gtctatgagc gaatcggact      1020
     accaagaatc tgtgtccagt ggatcccagc actcgttggt tgacccacat gcgtccgtta      1080
     gcgatgatga cgataatgca agtaaggatg attcggacca ttgccaacca catcagcgag      1140
     acgggacaga ggtagatgat agtgaagaac caacatccaa caccgaaagc cttgttcgtc      1200
     gtccacccga ggaaaacgcc gagctgtaca aacgaatgga ccaatttgag aaaatgctca      1260
     ataatatagc atccgtatac accactaagc agcgagatta ccacgttcct tctgaagatg      1320
     acgtcgagga aagctggagt tcagcgcgat ctgcagtacc tcaggatgca ccgatgcaaa      1380
     gtatccgatg ggaccacatc aaagcctttc ccaaaggcat cccagcgaac aagatgtggg      1440
     aggcctggca taaatacatt gagacatttg aaatcgctgc atcgctagga aatgcatttg      1500
     acccaccaag aagagctcag ttgttattcc tttccgttgg agaggaaatg caagccataa      1560
     tcagggcggc caagctacga ccgagtctgt cggaaccgga ttgctacgcg aagtttgtta      1620
     ggaacattga tcagcatctg cgtacagtga cggacacgag tgcagaacat gaggcatttt      1680
     cgaatatgca ccagggcatg gatgaaacgg tcatgaactt ccatgccagg ctggtcgaga      1740
     aggtaagact ctgtggttat agtgctgcgg accaagagcg gtttgttaga gcgcagttga      1800
     taaaggggat gtcaaatcaa gccctagcta aatccgccag aacatatggt tatgagacaa      1860
     attatgttgt ccagtctgca actcgtgacg aggcctacga cagaaatgca ggtccttctc      1920
     atcaggccag tactttcgca ttggaaggcc gccgttcgcg atacggtgca ggcagcggca      1980
     aagaccagga accagaagcc aagtacagac gaccaaacta tgcggcacgt gacacacgac      2040
     aacccgaaaa ctatcgttac aaagatacac atgctcttgg acgcagagcg ctgtgttcca      2100
     gatgccgtta cttgtctcat cgtaatagtg accagtgccc cgctctttct cgacattgca      2160
     acacatgtgg aatgaagggg catttcgccg ctgcttgtcg ccatcgacgt gagcgtagcg      2220
     tccaccacga tcgcccggag gagaatcaaa gtgaattgga tgttaaggaa caggtaaaaa      2280
     aagatcttag aatgtaaaac tatatgagct ttgataataa agttgaattc cctatttggg      2340
     ctctgtctat atctctattt ttagcaagtg aatgccctct ctcttcagga tgttttgata      2400
     aaatgcaggg ttggtcattc gagtcccatc gagtttttaa tagactcggg gtccgatgta      2460
     aacgtgcttt gtggccagga ctgggatgag ctgaaaaaag aggttggttt cgggacagct      2520
     accttagata taagggagca cttgagcact gcgaacgttt ggtcctatgc tacaaacaag      2580
     ccaatgacgg tggagtgcgc tatcaatgct cttgttcatg ttgtagggca agatggaatg      2640
     tctgtatcag ccaattttat tgtcgttaga catggtcgcc gatcattgct gggtcgatca      2700
     accgccagtg acttgggcct gttagcagta ggactgtccg tgagcatttg tgaacgcact      2760
     tctggggaca aagctttccc aaagatgcca gggatcgttg ttaagtttag catcgataaa      2820
     acgattccga cggtccggaa tgcgtacttc aatgttcccg cagcgtttcg aaaagcagca      2880
     cgacaaaggc ttaaggaaat ggaagagcga gacataatcg aacgagtgac cacagcacca      2940
     acctggatca gcggcatgtc ggccgttccg aaaggaaaaa atgattttcg atttcgattg      3000
     taattgagta acgcgtttta ccacttggaa ctcagtccgg agtcacgaga tttgaccaca      3060
     tttctttccg agggtggcat gttccgattt aagcgtctca tgtttggagt aaactgtgct      3120
     ccggaagtgt tccaacgggt aatgacgcaa attttagcag atgtagaaaa cgtcgtcgtt      3180
     tacatcgacg acatccttat attcgcgcga actttgacgg agctgagaat gacagtggct      3240
     acggtgctac aaattttgag aaagcacaac ttgacgctga acctcagtaa atgcgaatcc      3300
     gataagtctc atgttatgtt cctgggtcat gaagtggacg agcgaggatt tcatgtcgat      3360
     aaaaaaaagg tgagaagtat tgaaaatttc cggagtccac gtaccgcatc agaactccga      3420
     agcttcctgg gacttgcatc gtttattagt ccctacatac agaactttgc ggatatcacg      3480
     tcctcgctct gggcggtagc cacaacgaag tcctggaggt ggggtccgga gcaagaaagc      3540
     gattttgtgg cggtaaagaa taaaatttcc cattgtgtaa cggcattggg gtactttgcg      3600
     gaacatgata agacagtcct gtacacggac gcttcgtcga atgctttggg agctgtgctc      3660
     gtgcaggaag acaacaaggg gatgtcacgc gttataagtt tcgcatcaaa ggccttaact      3720
     tcaacggaga aacgttatgc ccaaaaccaa cgggaggcac ttggtgccgt gtggggaatc      3780
     gaacattttt catatttcct gctaggccga cacttcgtac tgcgaaccga tgcccagggt      3840
     gttgcgttta tgctcaaccg ttctcgggag aactccaaac gagcgttgac tcgagccgac      3900
     ggatgggctt tacgcctaac accttacagt tacgatatag agtatattcg tggccgttac      3960
     aatattgcag atccctcatc tcgcctctac attgcaaacg acgaaccgtt tgatgaacta      4020
     tgtagcccgt gggagatcgc cagtgtggaa tctaacagtg gtggtttctt gacagaatcg      4080
     gaggtgcaag aggctaccgc gaaggacgat gtcctccagc aagtcatagt ggcgctggaa      4140
     tcgggaagca ggtcaaaatc gcttcggaaa tatgagtcgg tgtcagaaga cttgtgtgtg      4200
     ctgaacgggg ttgtgatcaa aagaggttgc atagttgtac ctgagtctct ccgcaataaa      4260
     gttttagatg ttgcgcacag cggccacccc atggctgcaa aaatgaaaag cattcttcgc      4320
     gaaagggttt ggtggccagg tatcaccgtt gatgctgaag agtgggttga aggatgtcag      4380
     gcttgcgcta ctaccggtag gccagaaaag cccaccccta tgaagcgttc gtttgcgcct      4440
     aaaacagcgt ggcaaacgat cggactagac tttaatggcc catacgcgaa gctgggagga      4500
     atttcaattc tggtagtggt ggactacagg tctcgctacc tgatagctcg atcgattaaa      4560
     tccaccagct tccagcacac aaagcagata ctggaggata ttttcgagcg tgaagggtat      4620
     ccgcagaaca tcaaaacgga taacggtcca ccgtttaaca gtgaggacta taagaagtat      4680
     tgtacagagc ggggtataaa taccatcttt agtacaccgc ttttccctca gcaaaatggc      4740
     ctcgtggagg ggtatatgaa gctagtgaac aaagccttgg ccacggccat atcttgcggg      4800
     accagttaca tcgaagaact tcgagcggca gtaaatgccc ataatgcggc ggctcacact      4860
     gtaaccaaaa cgcctcccga agaggtgatg atgggtcgta aaataaggcg gcgtttgcca      4920
     ctgctactca gtggaaattc gaattacgat gaggatcttc ttgacatcag agatcgtcaa      4980
     gctaagctgc gaggtaaaga gtacgaagat tcgcgtcggg gcgccaaaga gtgtcgtata      5040
     aagcctggcg atttggtaat aacagaacga gtgacaagaa tgaaagggga cacaaggttc      5100
     gacccgacaa gatttacagt gattgaagaa gacaatggta atcttgttat tagcgacggt      5160
     gaagggaaaa ccatgcggcg ccacgtgacc caaactagga aggttaaaga atggaggaaa      5220
     cgggaatcag ctacgggcac caacttgaac agaggacaat taacccgagt tctcccaaac      5280
     cgggatcgaa agcatcctgc ttatctagac gattacatac gagtatgcga actcgaagac      5340
     aaaagctaca atcgatccaa ataaattgct atctttgttt gtaatcataa tgggaaaata      5400
     aaagttaaat ttacgatgaa tttactattg taattgtttt ttttttcttt tggagaagag      5460
     gaaaga                                                                 5466
//
ID   Gypsy-490_AA-LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-490_;
KW   Gypsy-490_AA-I; Gypsy-490_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-250
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-250
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3096-3096 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 250 BP; 58 A; 64 C; 63 G; 65 T; 0 other;
     tgtgggatgt gtgcttgcca acattaggtc aatctaccat acttcttggt gaaccctcaa        60
     gggctcaaca tttgacatat attctagcac acgagcatct gccgacgcag acttcggctc       120
     gggtacgaac gacgctgtgc gactagcagc aacgtcctct ttcgatcgta ggcagtcagc       180
     aaggtaagac gtgttcctgg aaagctggtg tcatgggtga ttctcaatca gtgcttcggc       240
     catttccaca                                                              250
//
ID   Gypsy-491_AA-I repbase;    DNA;    INV; 4846 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-491_;
KW   Gypsy-491_AA-I; Gypsy-491_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4846
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4846
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (15-APR-2019).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4846 BP; 1448 A; 960 C; 1260 G; 1178 T; 0 other;
     atttttgggg gctcgtccgg gaacggaagt tggattcgga tatcgcgagt gtcggattga        60
     aggatgcagt gagcaaacgt gttcgaagga ttattgcttc atcgtaaaaa tcagtggata       120
     ttctgaagta aatccgcaaa tattaccacg gtaaacgtga ccgtgaaacg tgatcataga       180
     actgtgcgtt gggaaataag ttatttccaa agacacgtgt tcaagtgagg gataattggt       240
     atcctattgt tccctgatcc gcaaacccca gttgtgagtg tctgaagatc aaggtcgggc       300
     tagacaatag aatcgatctt gtgtggctag aaaaacaaat tcccggatca aaacaaacta       360
     gtgaaagtga tcgtttgaag atcaaggtca gctcagacaa tagacagtga tcgtgaaaac       420
     aaactaccag atcaaaacag aagtgagaaa gatcaatagt gttctgaggt gtgttagtgt       480
     taccatggat gataggccac ctataccacc ttttcaaccc cctctgtttg taaacagcac       540
     tatgcctata caaatgaacc cgaacgacaa cagtttcgct agactgattg atcagctgaa       600
     tttttccaat gtaactgcta tgaatctgag ccaacagatg aacaacttgc gctctgaaat       660
     gcaaaccttg attcaagaaa atgcaaggct aaatggaatc attcagaata tgagcgggct       720
     ttcgatggct caaccgtcgt gtagtactcc gcgaagtgtt caatatcgct tagacaatga       780
     acaacagagc gctatgaggc acagaagttt cgagggtcat gacggtgcta ggggcaacat       840
     cgacggtgct ggaggtgatc acgttggtgg cggtaatgtt gaggacggct acggtggtga       900
     agatggcgcg aattgcaacc gtgcatgtgc aaataaccgg gttggtgata acggaggttt       960
     tggcggttgg cgcggtgtgc aagttgcgga gaggcgagct ggggatgatg ttggcgagca      1020
     acgatggaat atcgctgaaa tagaggctgc gtttgccgag ttcagtggaa cagatctgta      1080
     tccagtcaac aagtggattg cagatttcga ggaagtagca aattcaattg gattatctga      1140
     cctccgaaga tttgtgttgg ctaagaagaa gctagtgggc ttggcgaagc tttctatcaa      1200
     tacgatgagt gacattacca cgtggaatgc tctaaaggtg tttttgcgaa acgaatttga      1260
     atttaaagaa aacagtgcag tagttcacga gaagttacgt tcgcgaaaga agttcagcgg      1320
     agaaaatgtg ttggagtatt ttctggttat gcgcgaaatc ggagcgaagg ccgatctgga      1380
     aattgaagca atcatgaccc acacgataaa cgggatcaac gataacggtc cggataaaac      1440
     cgtattgtac ggatcaaaat cgatagcaga gtttcgtgag aaattacgac tctatcaaag      1500
     tttgaaagat gcgaaatacg gcagagattc agcagatcaa cattctgcta gcggacgaca      1560
     aggacaaggc agtcagccga gacttgctgg agccagagtt cgcaataaca acagggcaag      1620
     tgcaagtgca acggctaagc cgatagtttg ctatagctgt ggacaggcag ggcatatttc      1680
     ccgcaaatgc tccaaagcaa ggagcgagaa aaagatgcat atttgcaatg cagcttcttc      1740
     gccagttaaa ggtactttca tggaactaaa agtgaattcg tatccggttc gtgcattttt      1800
     tgactcgggc tcggacgtgt cgcttttgaa cgaccactgg gtcgaaaaat tacgattaac      1860
     ggtgaacaaa gatgagaaga aaaaactggt tacattgaac ggttcggtgt ggactctggg      1920
     taccgcaaag ctggacgtgg aggtagatga tacggtgctg cctatggttt tcgatgttct      1980
     tactgcgaag gagttaccgc acgaagtgat tttgggaaga aatcttctgc tgtatggtga      2040
     tgtgagtgtt accgccgaag gtgcgaaatt taaagtggca gaagaacatt ttgcaatgcg      2100
     aattgtggtg gatgaagctt ccgatgaatc attggcgcac attgaagatt ctgctgtgcg      2160
     tgaagaagtg aagcgtttag tgaacagata ttcgcctcag cagacagaag atgtgaatgt      2220
     ttcgttgaag atagtgctga aagatgaatc gcccatacac caacttcctc gacgattggc      2280
     accgctagaa aagcgtatcg tcgaagaaca aattagcgaa tggctgagag aaggaataat      2340
     tcgaaaaagc tcatcagaat tcagcagtcc cattgtactt gcacataaga aggatggtag      2400
     taggcgtctc tgcgtagatt atcgtcggct aaacaaggtg attgtgcgcg atcacttccc      2460
     tatcccgtta attgaggata ttctcgatga attacactct gccacggtgt tctctaccct      2520
     agatttggaa aacggatttt tccatattcc agtcgaggag agcagcataa gatacacgtc      2580
     ctttgttaca agttctggcc aattcgagtt cctgaaaacg ccgtttggat taagcatatc      2640
     tccgacggta ttccagcgct acgtgaacga cgtcttccgt gatctaatag ccaagaaggt      2700
     ggtgatcgtc tatatcgacg atcttctcat tcctgccgct agcgagcagg aagcccttga      2760
     aaagctacgg atggttttgg atgtggcgag caaaaatgga ctgcgcatca aatggaagaa      2820
     gtgtcaattt ctgtgccgga aaattacctg tttagggtac gaagttggcg agggaattat      2880
     tcgcccgtca gtagagaaaa ccaaagccgt tgttcaattt cccgaaccca agaattgcaa      2940
     acaaatccag cagttcctgg gattaacggg gtactttcgc aagttcgtgg aagcctactc      3000
     ggttatcgca aaaccgttga ctgatctgct caaaaaagat tcggttttta attttggacc      3060
     gtcgcagcga gaggcgtttg atagactgaa atcagccctg tgtactgttc cagcacttcg      3120
     attgtatcat cctggcaaaa taactgaaat gcacactgac gctagcaaag ttggatatgg      3180
     ggcaatattg ttacaaaaat gccccgaaga acacatattc caccctgtct actactacag      3240
     caagaagaca atgccagcag aggaaagata tccgagctat gagctagaag tacttgccat      3300
     agtctcatcc ctcaaaaagt ttcgggtgta tctgctaggt atcccgttca aaatagttac      3360
     cgattgttct gccttcaaaa tgactatggg aaaaaaggaa atctctcctc gcattgcagg      3420
     atgggcacta ctgttagagg agtacgatta cgagctggaa caccgatctg gcgaacgcat      3480
     gaagcacgtg gatgcactca gcaggaatcc agtcatcctt cttctgcaaa gcaacctgat      3540
     tgagcaaata aaagcgtgtc agcaaggtga cgaaaagttg ggagcaataa ttaaagcgct      3600
     ggcatttggt gaatatgcgg attactttat ggatcacgga atactctata aggctgtccg      3660
     tggaggaaaa ttactggtta caccacaatc gatgcagcac tccgtgatca gacagataca      3720
     cgatcagggt cacttcggga cacggaagat gagtgaattg attctgaggg aatattggat      3780
     cgacaacctt tcagctaaac tggacaagta tgtaaaaagc tgtgtgaaat gcattctagt      3840
     ggctcgaaaa tgtggtagga aggaaggctt tctgcatccc atcccaaaag acgaattgcc      3900
     gttgtccaca taccatgtcg accatttggg acctcttacg gcgtcgaaca agcaataccg      3960
     ttacatcttt actgtgatcg acgcattcag taagtttgtt tggatttacc ccgtcaaatc      4020
     gaccacttca gaagaggtgc tcaaaaagct tgaagtgcag aaatgtgttt ttgggaatcc      4080
     aaagcgtata atctctgaca gaggctcagc atttacgtca tcttcttttc acgaatattg      4140
     tgcgaaggaa caaattgagc atgtgctgat aacaacgggc gttccccgag gcaacggaca      4200
     ggtggagcgt gtacacggtg tcatagtacc agctctggcg aaattagcta ttgatcgtcc      4260
     cgagaattgg tacaagtacg tgaatgattt gcaacgattc ctcaacaaca cccttcagcg      4320
     aagtattggc cgaactccat ttgagttgtt attcggcaca aagatgcgat cctcggaaga      4380
     cgtcaggtta gcagaggccg ttgaagaaga gtgggtcaaa ctgtttgaaa acgctagaga      4440
     agaagccagg tttgaagctc gtgcgaacat tgaagaaatc cagcagaaaa tgaaaaatgg      4500
     attcgacaag aaccggaagg aagctgaagg atacgaagtg ggtgacttgg tggctatcag      4560
     tcgaacccaa ttcggcagcc acttgaagat tgcggcgaag ttcctcggtc catatcgggt      4620
     caccaagaag aagcggaacg agcgatacga cgtagagaag gttgggactc acgagggtcc      4680
     gaacaaaaca tcaacgtgtg cggagtatat gaaacggttt gtgccaaacg acgatgatga      4740
     cgaattcgac gattgtgatg aagactgccg tatcgtacca gatgatgaaa cctgaatgct      4800
     aaacagaaga cggcatccga gccggatgct tcccaggagg gccgaa                     4846
//
ID   Gypsy-491_AA-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-491_;
KW   Gypsy-491_AA-I; Gypsy-491_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-252
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-252
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3097-3097 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 252 BP; 69 A; 59 C; 47 G; 77 T; 0 other;
     tgtggagatg tattattgaa caaccctaaa taccgacctt tgcgctctca ctctctttcc        60
     ataacgtaga actctgaacc tttctacttt tgaattcgta gtcagtactc aagtgatagc       120
     gcaaaggacc ggtcctattg ctggcgtgaa ttatttcatt aaaagttgaa ctcgaaatca       180
     cgacgttatc ttctcgtaat ccgaaataga agttcccatt ccgattcccg ttgaaagtta       240
     cgcggtgcga ca                                                           252
//
ID   Gypsy-492_AA-I repbase;    DNA;    INV; 5314 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-492_;
KW   Gypsy-492_AA-I; Gypsy-492_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5314
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5314
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3053-3053 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5314 BP; 1624 A; 1034 C; 1280 G; 1375 T; 1 other;
     ttttggcgca ccgtcggtag gatttggaca aaattgaggt agcggcatgg aggttgtttt        60
     ttttttcatt gcttcgcaag ttaaacatca aaaccttcaa atkctactgt attagtgaat       120
     aaatatgcga gtccggttat gtaccgaagc gcacgaatac caagaaagtt ttgaaaagcg       180
     agtccggtca cgaaccgaag cgcacaagtg aaaagctagt ccagtcgatg aactgaagag       240
     cttacgcgag tccggtcatg agccgaagcg cattaatgat agctagtcca gtttatgtac       300
     tgtagagtaa acgcgagtcc ggttaaaaac cgaagcgcat caatgaaaag ttagtccaac       360
     cttcaatgtg tatatgtgag accgggcttc gaaccggagg agcacaaaag tcacacctat       420
     acaacgaaga aatactttta aaatgcttgc ttcgattgca cactgaaaca tgttatcatc       480
     cgttattgga atactaaata ttgcgaaaag tcacagttag catgatgctg ttgtatgtca       540
     catgtcttgt aatatcccaa gttttttttt cttttttttc ttctgctgca gtaacaatta       600
     gttatgcatg acgtcaaaca aatcttattt tgttttgtat caaaaaaaaa aaaaatggat       660
     ttaaaatgtg tcaactaatc aaaaagaaaa cataagcatt tttacttcag tgtatcgggt       720
     ggaatttgac agtttcgtta gaaaaacaca acaacgactg taagcgaagt ttgtttggaa       780
     aacgttcgag ttgatttaca atttgttgat gttacagaaa gttagaagtg gaatgtaaaa       840
     gaataacata aaggtggaaa ttaatcaaac taggtaaaat aaataaatac tgaataggcg       900
     ctatgcgatt atattttttt acagatgtct tacgagggta aaagagcatt gttagagccc       960
     ttcaacgacg cagtcgacag ccaggatttg agacgcgagt gggaggagtg gcatagagct      1020
     tttgagctga ccttagagct gcgggacgtc gacagtcaac atgaaaaact cgtgttcctt      1080
     ttggcgagtg gcggaagagg gttgcaacgt atcttctata atctccgccc aacatcagat      1140
     gaaatctacc caggtccagt aaaagttccg ctaatgccga ttgagacccc ggaatacgac      1200
     aacgctgtga aaaggttgaa taggtttttc attgggaaaa ggaacgagag ggtcgagctg      1260
     gaggttttcc gatctatgaa gcaaaccgcc gatgaaccca tcaaccaatt tcttttgaga      1320
     ctacgggcgc aggcggcccg gtgtgatttt ctcgagcgag aggagaagga aatactacag      1380
     cagattacga tgggagcccg agacgaacga gttcgtgata aagggctaga agacgtcatg      1440
     aatcttgatg agctgattaa ttacgctatc aacagagagg ttctgctgaa gcaaaaaggg      1500
     aaactacgat catttccaga agaccttcca acgacatcag cggttaacca gatttcgagc      1560
     aagaggcagg actataccga tagaaatcaa aggaagtatg gatcgaggat ggattttcag      1620
     cgacgagcgg acaagcgtgg aggaatggaa tgctcgcggt gtggttcata ctatcacggc      1680
     acggaatcaa caaactgcta cgcacgcaat gcgcgatgca acagctgtgg gaaactggga      1740
     cactattcga ggaaatgcag gaacactgga aatgctcgta tgggtcagaa tcgctacaaa      1800
     cgcagccgtc caaatagcga cataaatact gttcatcgcg agaacgtttg gaaggaagaa      1860
     caacagagac atcttgatac ggaaacgggt ccaaaggtat ctttctaggg atatatgcat      1920
     cgaactgttg cgtcacaatg tcctattaat aaaactaaat catcactttg tgtttatcat      1980
     caatacgttt ggtaagaaat agcaatacaa tgcaagcatt ttcttttatg tctcaggttt      2040
     ccgatgttgt gtgcgataac ggaacggtgg tatgcttgat tgacaaattt ccagttgcgt      2100
     tcttggttga ctcgggagcg gctatcaata ctgttacaga agatgtctgg aaaagtctca      2160
     tcggcagtgg ggcaaccctg ttcaagagaa aatttcagtg tgaccgaaca ttcacagcat      2220
     acgcaagtca gcagccattg cgtgtacatg cgttgtttga agcctggatt tcagttaacg      2280
     attgcaaacc aagttgttat gcagaattct tcgttattga aggagccagt agatcactcc      2340
     tgagcaaaac cactgctgag tatctcaaaa tacttaagat tggattagat gttaacaata      2400
     tcaatgaaga aattgttcat ttcccaaagt ttccaaatat ccaagttaaa ttatcgattg      2460
     ataagtcggt gaccccacga aagcttgctt atttgaaaat tcctgaggct ttgaaggaga      2520
     aagtcgatca gaaaatcgta gagatgttaa gctcggatgt aattgaacca gctgaaggtc      2580
     cggcggagtg gatttcgccg atggttgtcg taccgaaagg taaaaacgat attcgactgt      2640
     gcatcaatat gaaacaacct aacaaggcaa tacggcgaga acacttccca cttcctgtga      2700
     ttgaaacgtt tttgaacaag ctccgaggtg cctcatactt ttctaaattg gacataacgt      2760
     cggcgtatca ccatgtggag ttgcacccag attcgcgaag cattaccact ttcatgactg      2820
     atcgtggttt gatgcgtttc aaaagattga tgttcggtat aaattgcgct cccgaaatat      2880
     ttcagcgaat tatgtcacag atgcttgcag gtattcattg agttatttgg ataatgtttg      2940
     catgtatttc tattataacc taattggact tattttgtta ttttaaacat tttggaatga      3000
     ttttctccct cgcaggcgtt gatggggtta tcgtctacat tgacgacatc gtcgtttcag      3060
     gcagaaccaa aaaggagcac gatgaacgtc tacaaaaggt cctaacaatc ctcaacgaaa      3120
     acaacgcgaa acttaacagc gataagtgta tctttggcgt aacggggatc gaaattcttg      3180
     ggtttaaggt gagcacggaa ggaatcagcc caacggagaa caaaatcgaa gccatcaaga      3240
     acttcaggag accggaaaca agggaggaag ttagaagttt tctcgggctt gtgaactttg      3300
     tgggacactt cattccccat ctttcaacca gaactgaacc attgcgtcag ttcatgcgtg      3360
     gtgatgttaa agttttcggt atggaacaag cagaagcttt tgacgatttg agatttgagt      3420
     tgacgaagaa tgttcggaaa ttgggctact ttgatccaaa ggatgtaact gaggtttatg      3480
     ttgatgcgtc tcccgtgggt cttggggcag tattagtgca acgacatcaa ggcattgcca      3540
     ggattataag ttttgcatca aaaggactta ctgcagcaga gcgagtttac ccacagactc      3600
     aacgagaggc attggcggta gtgtgggccg ttgaaaaatt ttatttgtat ctgtttggtc      3660
     ttcattttac catattctcc gatcataaaa cccttgaatt tatttacggg aataaacacc      3720
     aggaagggaa aagagccctt tcaagagctg aaggatgggc gctccggctc caacctttcg      3780
     attttgagat caagcacatt gcagggcaag caaacatttc agatccactg tcacgactct      3840
     gtacgcaaat cgacaagccg ttcgacgatg acgcggagca ttatttgtgc gcgataggag      3900
     atagccttgc ggcgataaac cttgaggaaa tacagaatga aactgatctc gacgaagtct      3960
     tgcaaggggt taagctcgct ctcgaatctg gtaattggcc acaggttctt tttcgttatc      4020
     aagcgtttgc taaagagttg ggggtctcga atgggattgt tgttcgagga gaaagaattg      4080
     tgcttccaga gaagttgagg ccgaaggcgc ttgatattgc gcacagaggt cacccgggta      4140
     tagtagctat gcgcagaaac ttgagagaga aggtttggtg gccttgtatg gaccgggacg      4200
     tggttgacag gatccaagaa tgtgcagggt gcgcagcggt tagtaatcta atgccaccag      4260
     agcccatgta tcggaaggaa atgcctgatc gcgcctggca acaaatcgct attgacttct      4320
     tctcagcgaa ggaatgtgca acttttctgg ttgtcgtcga ctattacagc cgatttttgc      4380
     aggtcgtaga gatgaagtgt actacggcag ccaaaacgat tgaagcactg gaagagattt      4440
     tcataaacca cacctaccca gaaaccattc gcagtgacaa tggccctcca tttacaagtg      4500
     aagagttcgc tgcttactgt ttgaacaaaa atatcaggct tgttcgcaca atcccttatt      4560
     ggcctcaaat gaatggcctt gtcgaacgga caaatcaagg gatacttcga gcccttcgga      4620
     tagcaaaagc taccaaccag gattggcgaa aagctgtaaa ggagcacgtc tacacttaca      4680
     ataccacacc gcattcggtc acagagaagg caccgttgga gcttttgact ggacgtccag      4740
     tgaaagattt gctgccatct ttgagaaccg acccatcttg ggaccgtgat gagagtgtac      4800
     gggataagga tgctgttaag aagttgcaag ggaaaatgta tgccgatcaa cgacgccatg      4860
     ctcagatgtc cgacatagag gtaggcgaca cagttatggt caagaatttc aatagtggaa      4920
     agcttgagcc tacatttcga ttggacaagt tcaaggtgat tcaaaagaac ggaaacgaca      4980
     ccgttataga gaatgaggag ggagtgaaat tgcggcgatg tgtaactcat ttgaagagat      5040
     ggccaacgtc ttctgcttca aacgaatctg ttgcagtgcc gcaaacgttt tctaaatcag      5100
     ttcccctatc atctgtccca ccaacccaag taagtctaca gcaagatgaa cagcagttac      5160
     ccatatcggc gaagacaatg aaacggaaga cttcagatga ttcaagtagc gtccaacact      5220
     ctgcaaagcg tccgagcaga gacagaaagt taccacaaag atacatacaa catataactg      5280
     ataatgacca tttttctttg gagtagaaga agga                                  5314
//
ID   Gypsy-492_AA-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-492_;
KW   Gypsy-492_AA-I; Gypsy-492_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-249
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-249
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3098-3098 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 249 BP; 93 A; 21 C; 79 G; 56 T; 0 other;
     tgtagagtac gttgaatatg ggtagaacag agtagatgtg tatttggaga gttgtgggga        60
     gggagcagaa taaagagggg aaggcaagga aaagagagga ggtagaggtc agagggaacg       120
     gatcaaaaaa tcgactgtgt gtattctgtg taatcggaag cggaacaaat aaaagatatt       180
     aaacagtgaa ttgttgatac gtgagttatt tagaggacta ccgaaatatg caaaaggtaa       240
     gattctaca                                                               249
//
ID   Gypsy-493_AA-I repbase;    DNA;    INV; 6543 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-493_;
KW   Gypsy-493_AA-I; Gypsy-493_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6543
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6543
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3054-3054 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6543 BP; 2169 A; 1369 C; 1417 G; 1581 T; 7 other;
     atggcgatcc tgccaggttt gctaattgac aataaaatag cgtaaacctg gttttcgaat        60
     cgaataaatt aatattaatc cttattttct tgaatggaaa tcacccggta actggcctag       120
     tgactagtga aaaaagtgag caaggtagaa cataaccaac aagaaaaaaa attcaaaatt       180
     tgcacttcat cacgcgtgtg caagcgcaac cagccaggtg aaaaaaaaaa tggtgccatt       240
     caaccgtgta ctcaacccca gtgaccactt atttttcgat ctttatttca ttacgtttga       300
     maagaaggat attaatgtta ccacggatat tctgatgtaa atgttcccgc attgaaaaaa       360
     aaagatatct ttttcaccgt acttagccac actcgcaggc gtaaccatac gagagggtga       420
     acgaaaaaaa aagaagacat ttttcgaatg ttccgtgctt cggccacagt tgattatgaa       480
     ttgtccacgg cgtgcccaaa agtaaaaaaa gaaataataa taataataat aataaatatt       540
     ctgtgctttg gccacaaaat aagtgaattg tccacggcgt gaccggaagt ccgcaaaaga       600
     aaaaaaatcg tacattttgt gctttggatt atccacggcg tgaccaaaag tcccagagga       660
     gaaaaaatat atgtacatat ataattttaa aaattaataa aattaaattg tccacagcgt       720
     gaccggaagt ccgcaaagtt aggaaaaaat tgaatattct gtgctttggc cacaaataag       780
     taaaattgtt cacggcgtga ccgaaagtcc gcaacgtaga aaaaaaaaat aaataaataa       840
     aaaaaaaaaa aattgcccac agcgtgaccg gaagttcgca aagtaaaaaa aaaataaata       900
     aatattctgt gctttggcca caaataagta aaattgtcca cggcgtgacc ggaagtccgc       960
     aatgtaaaaa aaaaaaaaaa agactttgtg ctttggccac aaacaactaa aattgtcaac      1020
     agcgtgaccg gaagtccgca aagttaggaa taaaattgaa tgttctgtgc tttggccaca      1080
     aagaagagta gattcgtcca tgacggacca acagtctcca aaattaaata aatatattta      1140
     aaaatatatt aaataaaatg tttacaccgt gccctcaaat ccgcaaagtc aaacaaaaaa      1200
     aaaaaaatct gtgccttggc aactatcaat taaagttttg ttaggttgtt gaatgttatt      1260
     cactttgcct cgttttgccc acgtataact acccaatatt gtactcaata atataaaatg      1320
     tatcaaaaca tttgtacaaa tgtttcagaa agcgaaaaca aacgaaatgt cgaacggagg      1380
     caaatacgtc cgagccccga gggatttcga tccagagtgg tcccccgata cggatattca      1440
     agctgattgc gattcatgga aagaactcga ctctcctcat agcatccctg attcacaaaa      1500
     cgacgaattc gatgacgagc gtgagggaag ttccgattcc agaaatgtga gtgacttcat      1560
     gttgccgact gatgtaccgg atctcagtgt ccaggaagac catgaaatat gcccaaccca      1620
     aatcaacgaa attaatggca acaaggacca gaacacggac gaccgccttc agaaaatgga      1680
     aagtgtactt tctgatatga cgaaagcatt acgctccatg caaacaatgc gtcctactgg      1740
     atacgacccc gatgaagatt ggtgtgcatc tgttgcaccc aagaatcctc atgaatcctc      1800
     cttttcaagc gtacgctggg aaaatatcaa acctttccca gcgggagtag cggccaacca      1860
     gatgtgggag gaktggaacc gctacattga aaattttgaa ctcgcagcaa cccttagcaa      1920
     cgcaaacgac cctgtaagaa gatcgcagtt gctgttcctt tcaatgggaa ccgaactgca      1980
     aggaatcgtt cgagctgcaa aactacgacc aagtttgaac gacgcagact gttaccgcaa      2040
     gtttgttgcc aatattagag cctatttcca gtctatgact gacgcatccg ctgagcatga      2100
     agcgttttct aacatgaggc aattgaagtc tgagaccgct gttgctttcc acgcccgttt      2160
     gatggcaaag gtccggctat gtggatacag cccatccgat cacgacagat ttgtgcgatc      2220
     acagctcttg aaaggattga gaaacaaaga cttggtgaag gcagccagga catacggaca      2280
     cgacaccaac tacatagtac aggcagcaac tcgggatgaa gcctacgaaa cggtaagagt      2340
     gacagcggcg gacaacatcg aaccgtatgc agttaaccac gtgcaccgaa aaccatcagt      2400
     acaagaatcg ataaggaagc gcttgagaac agatacaaca gggccacagt caaaacgttc      2460
     gcgtaccatg cagcagacag cacatcgata cagccaagat ccaggacgca ggagccgttg      2520
     tcgacgatgc aacggacgca gtcattcgaa tttgccatgt ccggcattga accgcaactg      2580
     caactattgc ggtgaacgtg gacactacgc aatctgttgc cgtcaagmcc acgttcgaca      2640
     ggtcgaagtt aaacgtagcg catcgcctac acgagacgtt gacggtcaca tggatcaggc      2700
     acaggtatta aatgattgaa tttattagac ttgaataaaa cagaattaaa tgaaatctat      2760
     attcgtttgt ttcatgaatc gttattttcc cattttagta tgttaatgca ctatctcttg      2820
     aagacgtttt ggtggactgt cgtataggct cgtcaagtcc aattcaaatg cttgtcgatt      2880
     caggcgcgga cgtgaacgtt atcgggggtg aagattggct tcgccttcag caagaatata      2940
     aagcagggtt ggcaaatctc actattgttc aaccatcgaa ccaaaaagag ctccgcgcat      3000
     atggcacgca caggtctatg gtcgtagaat gcacattcga agcaaatatt atggcgtcga      3060
     acggcaatac atctcctaca aaagcaatgt tttacgtcat acgtaatgga acacgatcat      3120
     tgcttggtcg ctcaacggca agcgacatgg gaattctgca tgtgaacgcg agaatcaaca      3180
     gcttagagaa agcaaacaag cttacaattt ttccaaaagt cccgggctta aggataaaat      3240
     ttagcattga tgaaaccgtt ccacccgtca gaaacgcgta ttataacgtg cctgctgcct      3300
     ttcgagaagc agccaagaat cgtttggcgg aaatggagtc acagggaata attgagaaag      3360
     tcaccaccgc ctccaattgg attagcggta tgtccgcagt tgccaagggg aaggatgatt      3420
     ttcgattagt ggtcaacatg cgaggcccga atagagcaat caatcgcgaa tactttcgac      3480
     ttccattgct cgaggagatg aagatgaaac ttcatgggtc caaatatttc acgaagctcg      3540
     atctaagcaa cgctttctac cacattgaac ttcatcctga atcacgtgat ctaacaacat      3600
     tcctcaccga aaatggtaag tacctgatgt tgtttaagca ttgaactcgt ttttgctatg      3660
     ttctatgatt tctctctata ggtatgtaca gattcacaag attgatgttc ggggtgaatt      3720
     gtgcccccga aatcttccaa agagagwtgt caagaattct gaagggtatt aagaacataa      3780
     ttgtctacat tgacgacgtt cttatctttg caaattcact ggaagatttg cgaaaaaccg      3840
     tgtgcgaagt cttgaaaaga ttaagagaga acaatctgac gctaaacacc gcgaaatgtg      3900
     agttcgataa atctcgtctc aaattcttgg gctacgaact cgacgaacac ggctttcacg      3960
     ttgatgcagc aaagataaga agcatacaaa attttcgaga acccaacacg gtgtccgagt      4020
     tgcgcagttt tctaggactg gcctcattca tcagtccgca tgtgaagagc ttcgcagaca      4080
     tcacaagtcc attatgggaa atcatcgctg ccaaatcctg gacatggggg cctagacawa      4140
     gcaacgcgtt cagcctagtc aaagaacaga ttatgaaatg ttgtatgaca ctaggatttt      4200
     tctccgaaaa tgacaaaacg attttgtaca cagacgcttc acctgtagcg ttgggcgccg      4260
     tactcgtaca ggaagacaag cagggaaaat ccagaatcat aagctttgca tctaaatctc      4320
     ttaccaatac agagagaaaa tatgctcaaa accaacgcga ggctcttgga gcggtttggg      4380
     ccgtagagca tttttcgttt ttcttgctcg gcagacactt tacgctgcga acagatgcgc      4440
     aaggtgtatc atttatactg aatcggtcac gtgaagactc caagagagct ttaacaagag      4500
     ccgatggctg ggcgcttcgg ctgagccctt ataactacgc cgtagaatat gtgcgaggta      4560
     ctgaaaatat cgctgacccg tcttcgcgat tgtacaccgg tgaagacaaa ccattcgacg      4620
     aagataatag cccgtgggag atcgcatgtc tggaagccaa tgcaatcgaa ttcattacgg      4680
     aaaacgaaat taaagcagct acatctacag accaaaccct tcaaggtgtc atagacgctc      4740
     taagttctgg acagtggccc gaacatttac ggaaattcca gcttctggag aaagatctaa      4800
     caacccgaga tggaatgtta gtgaagactg gctgcgtggt catcccagaa actcttcgaa      4860
     atcggacatt agaggtgtcg caccgtggtc atccttcagc tgacaagctc aagagtattt      4920
     tgagacagcg tgtgtggtgg cccggaatga acattgatgc tcaaaggtgg gtggattcgt      4980
     gcgccacgtg tgctgtcaac ggtagaccgg aaaaaactac cccgatgaaa cgcattttcg      5040
     caccaaaggc agtatgggag accatcgccc tggatttcaa tgggccttac gcaaaattcg      5100
     gaggaatatc aattctggtc atagtcgatt acaagtcaag atatctgata gctcggccag      5160
     taaaatcaac cagttttgaa caggtaagaa aagtgctcga agagttgttt gtacgggagg      5220
     gtgcgccaaa gtttataaag acagacaatg gtcccccgtt caatggccac gaatataaaa      5280
     cctactgtac aagtcgcgat attactccaa tattttctac tccactgttt cctcaacaaa      5340
     acggtctagt agagagttat atgaagttaa taaacaaggc aatggcgagc gctgcattga      5400
     acgacacaag ctacgttgaa gagctgaata tggctatcca tgctcataat gcagcatgcc      5460
     acagcgtaac taaatttcct ccggaggaaa ttatgtccgg gcgaaaaatc aaaagaggcc      5520
     ttcctctagt cgattttgat aaagttgtaa tagatgaaaa actgtttttt gaaagagacc      5580
     gggatgcaaa aatagcaggg agagaacggg aagatcaacg tcgtggagcc cgcttgtgcc      5640
     gaataagtcc gggggacacc gtaatagttg aacgattgat acgcggtaag ggagaatcgc      5700
     gattcggttc acaaagatat acggtaatcg aagctaataa cggcagtttg acacttaatg      5760
     atgatgaggg caatgttcta aagagacacg tatcccaaac caaaaaggtt tctcagtggc      5820
     gcatcgaaga aactccaggt gatcccaaaa cacaagaagg ttctgaagaa acactttcca      5880
     atcctagcaa tgtcgtccac agaagcttac gagagagaaa agcaccgtca tacctgcaag      5940
     aatacgtacg attgattaat aaagatgaat aagcattcga agcaattatt gctagttcgt      6000
     ttagacaatg ttgttattgt tatacttacc aaaacattgt taccaaataa aatgaattcc      6060
     tactccaaaa aaataaaaca ataattcata ctgcttgaga aattagctat tcgaagtgcg      6120
     aaacaaaaca taaacctaca aagtgggctg acttttcgtt tcagctgcag ccagtatctt      6180
     gagctaaaat agctgaacat acaataacac aacttttttc tctcgcaagc ctatgcaaaa      6240
     gtttgacttt aactgtgcgc cctgttttca agttgcccgt gagagagagc gagacagcat      6300
     taactcacgg cgcacagtga aagtcatata taagaacaga agaatttatg acacgcacag      6360
     aggctcattg acagatgtta ccccagtkga aatcaaatgc taaggaaaaa aaatgaacta      6420
     tggcccggtg taaactaaaa tgtgttaaca ctagtacgat acactggaag taaaacaaac      6480
     gcaacatttt ttawatgcaa agataaattt ctgagtaaat atttttttta agaaaggggg      6540
     aga                                                                    6543
//
ID   Gypsy-493_AA-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   15-APR-2019 (Rel. 25.10, Created)
DT   15-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-493_;
KW   Gypsy-493_AA-I; Gypsy-493_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-254
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-254
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3099-3099 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 254 BP; 77 A; 63 C; 50 G; 64 T; 0 other;
     tgtgtggcct atgataacaa attgattatt tccgtcatac tagttttaca gtgtacagaa        60
     taataccgcc gacgcatagt cgacatacac agccgacatg atcattattc aaatctggca       120
     tagcataagt aggctgtgat ccaacaccat cagtttctcc tacggccgcg ctgcaaccgg       180
     taagtgatca cgacccaact aacaacaggc catttgcgcc gggtgattcc tttacagaaa       240
     ttaagaagtg caca                                                         254
//
ID   Gypsy-494_AA-I repbase;    DNA;    INV; 4727 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-494_;
KW   Gypsy-494_AA-I; Gypsy-494_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4727
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4727
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-APR-2019).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4727 BP; 1658 A; 777 C; 999 G; 1293 T; 0 other;
     tctggcttcg aggtgggatc aaagtatttg gaacacgaac tcggaacacg cattacgaat        60
     atttcaaacg gataacgagt ctatttcaaa aagacaaata tttcaaagga ttacgaattt       120
     agaaaaaaac attttttgaa ttggtaagaa attaatgtgt ttaaaaaaaa aacagtacac       180
     tgctatacgc aggacactcc gctgctaata gcagggaagg cgtaaaagcc tctaccattt       240
     gtagaaataa gctatactgc tataagcagg acactttcac tgcggaatgc aggaaaaaaa       300
     atccacaatt gtttgaaaaa taacagatga gctattaccc tagcaaccat ccctatgact       360
     aagttttaaa aaattttagc tgaaacggaa tcaagaatgg aaggatggaa tataaatcca       420
     tttaagttca accatcttcc cgagacacaa acccgaaagg aatggatgcg atggaaacga       480
     aactttgagg tcattgttgc agccagtgag gaaaagaact cgacgaaaat caaaaacata       540
     ttgcttgcga agggaggcct cgagcttcaa gatttattct attccataga aggagcagat       600
     gttatcgaag atgaagaaag gaaaattgat ccctacaaag tggctttaac gaaacttgat       660
     gatcattttg cgccgaagca gcatgagtct ttcgaaagga atgaattttg caagctatcg       720
     ccagatgtta accaggaagg caaacgtgag acattatcga agtttttgat gcgctgtaca       780
     gaacaagcca agagatgtaa tttcggaaag acagaagctg agagtcaaga cctacgtatt       840
     atagataaag tgatttatta tgcaccaact gaactacgag aaagactgct gcaaaaagag       900
     aagctgtcca tggctcaact tatacgaatg gtgaactcat acgaatcgat caaactacaa       960
     gctaaagcaa tagaaaacac attatcgagg gataattctg tatctgcagg tttgatctat      1020
     aagctagata tatattattt tagaaatgaa catgaagcgt atttggttta tgtttaatta      1080
     ttaattattg ccatcatttg gttacagtta cgaatcacga tgcgcgactt aacaggttga      1140
     atgctaacgg ccaacgtttc aacagcacat gctttcgttg cggtcatcaa aaccattatg      1200
     gaaccagtcg tcaatgtcca gcgcgtggga ggaaatgtga gaaatgcaac aaaataggac      1260
     attatgccaa aatgtgcaga tcgggaacaa gtttcaagcg taagtacgat gaaccatcac      1320
     cacatcatgg agggaaaaga atgaagttta gccaagtacg tgcagtcgta gcagaagaaa      1380
     gcaacgacga tggacaaaat gaaccggaga gttttatttt caatattggt gatggagatg      1440
     aatacctatg gacaaaagta ggaggtgtgc tgatacaagt attaatagat tcaggtagtt      1500
     caaagaatat tattgatgac acaacctggc agtacatgaa aaaacatcat gtgaagagtt      1560
     gtgttccaaa ttatgtaccg agcacaattt tgagaggata cggcccgaat acgaaaccat      1620
     tggaaatcgt tcatgttttt gaagcttcga tatctgttga ttcgtcagac agcaaacttg      1680
     aaacaatcgc gacgttctat gttataaaag gaggacaaca atcattgctt ggcaaggaaa      1740
     cagcaaaata tctaggtgtg ttaagaattg gactacctgg tcctgagaat tcaattaaca      1800
     tgctaatgtc tatggagaaa cgtccttttc caaaaatgaa gaatgttaag gtgaggattc      1860
     ccatcaacca gagtattacc ccagttacgc aaagagttcg ccgtccaccg attgcattgt      1920
     taaacaagat tgaagacaaa ttgaatcaac tgttggctat ggatataatt gaacccgtat      1980
     caggtccagc acagtgggta tctccgctgg ttactgtcat caaagacaat ggtgacctac      2040
     gcctatgtgt ggatatgcgc cgtccaaacc aagcaattca gagagaacac catatgatgc      2100
     caacctttga agattttctg ccacgtttca agtcagctag attcttcagt cgtttagata      2160
     tcaaggatgc ttttcaccag gtaaactaga tatagataat cttaaagata gttatgtgta      2220
     tttgtattat tatgtagtta ttaatattgt tgaatgttgt cctattttga ttatgattta      2280
     tttagattga gctggaagaa tcatctagac atattacaac attcatatgc cacaaagggc      2340
     tgttccgcta taaacgtcta atgtttggca tttcatgtgc accagaaatg tttcaaaaga      2400
     taatggagca tattctagca gaatgcgaaa atgtggttaa ttatattgat gatacgataa      2460
     tatttggtga gactgagaag gaacacgacg aagctttgga gaaagttctg aatgtactga      2520
     aaagtcgaaa tatcttgttg aaccaggaca aatgtatttt caaagtaagg gaggttgagt      2580
     ttctcgggca tttgatgtct tcagaaggaa ttcgtccgac tgttagcaaa gtcgaagcat      2640
     tacagaaatt tagagaacca aagacttccg aagagatcag gagttttctg ggacttgtta      2700
     cgtatgttgg aaagtttatt cctgatttag cttcaatcac ggaaccactc cgtcaattaa      2760
     tttgcaaaga gaacaaattt gtttggacgc aagaacatca gaaaagtttt gaacatttaa      2820
     aaagattaat atctaatgta caaacgctgt cattttttga taactcattg aggacacgag      2880
     tgattgcgga tgcctcacca gtagctttag gtgcggtatt ggttcaattt gatggaatga      2940
     aagattgtga tcctcgtatc atcagctatg caagcaaaag tttaactgta acggaaaaaa      3000
     gatattgcca aacggaaaag gaagcattag cgttggtatg ggcagtagaa aaattttcaa      3060
     tgtaccttat aggtcgagaa tttgaattag aaacggatca taaaccactg gagattatat      3120
     tttcacctac atctacacct tgtgctagaa ttgaacggtg ggtgttaagg cttcaatcat      3180
     tcaaatttac cgttaagtac cggaaaggat caggaaacat tgcagattct ctatcacgac      3240
     ttgttgttgg aaatgatcca gttgagtttg aaactgacaa tcattttctt gttcttgctg      3300
     ttcaagaatc agcggccatt gatgtgggtg aaatcgaaaa cgcttctaaa gtggatctag      3360
     aactcaaagc agtcaaggat tgtcttgtgt caggaaactg gactgatcct ttagtaaaac      3420
     catatgaacc atttcgaaat gagcttggta tgattgaaga tacaattgta cgaggaaata      3480
     aattggttgt tccacaagaa ttgcgtccta gaatgcttca gttagcacat gagggtcatc      3540
     caggagagtc gattatgaag aaaaggttac gagatcgagc ttggtggcca ggtatggacc      3600
     gcgaagcaaa agagattgtt tcaaactgtg aaggatgtca actaatagga ctaccaagta      3660
     agccgcttcc aatgagtaga cgagagttac ctacaaaacc atggatcgat gttgctattg      3720
     attttatggg accacttcct tcaggagaat acttactagt gatagtggat tatttcagta      3780
     gatataaaga agttgaagtc atgtcaaaga tcaattctcg ggaaactgtc aacaagttga      3840
     ataaaatttt tatacgtttg ggatatccaa gaactatcac tcttgacaat gcgaaacaat      3900
     ttattgcgaa agagtttgaa gaatattgta aattacacgg aattcatttg aaccattctg      3960
     caccatattg gccacaggaa aatggattgg ttgaaagaca aaatagatcg cttttgaaaa      4020
     gattgcaaat aagtaatgca ttgagaagag attggaagaa ggatttgaac gattatttaa      4080
     tcatgtatta cacgaccccg cattcaacaa caggcaaaac tcctacggaa ttatgttttg      4140
     gacgtacaat aagatctaag ataccatcca ttgaagacat agaaacaatt ccagtatcat      4200
     cggactatcg tgataaagat ataataaaca aacagcaagg aaaagaaaga gaagatagaa      4260
     gacgtcatgc tcatgaatcg gatattaagg atggagatat tgttttaatg agaaacttgt      4320
     taccagccaa taaactagct acaacgtttg ggagatcgaa atataaagtg acaaaacgta      4380
     caggagcccg agctatagta gaagatcaag aaacaggagt aacatacgaa agaaacattg      4440
     cacatttgaa aaaggttaac ccttccatat cagccacaac attcaattgt gaagactata      4500
     acaaccctac atttaatgaa tcaggcccag tgatgacgaa ggaatcaaca atcctacctt      4560
     cggatgatga tgaacctgag ttccgaggat tctcttctga tgactgattt gcggatttgg      4620
     acaatgaact attgatgttt aaatttgaat aatattattt atgaactttt gaaccatgtt      4680
     ataacctgtt atgtatttgc tattctaaaa ttataagaaa aaggaga                    4727
//
ID   Gypsy-494_AA-LTR repbase;    DNA;    INV; 107 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-494_;
KW   Gypsy-494_AA-I; Gypsy-494_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-107
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-107
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3100-3100 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 107 BP; 33 A; 14 C; 22 G; 38 T; 0 other;
     tgtgctatcg ttgtgtatta gtaggctttg attagatttg gaaataataa attcagatta        60
     ttgtatgcac ctacagagag tggacgtact taattcaagc tatcaca                     107
//
ID   Gypsy-495_AA-I repbase;    DNA;    INV; 5553 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-495_;
KW   Gypsy-495_AA-I; Gypsy-495_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5553
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5553
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3055-3055 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5553 BP; 1795 A; 967 C; 1268 G; 1523 T; 0 other;
     ttggcgacga gaaaaaaaac gagtgagtac atccaacagt gtccaattac gccaaaatgt        60
     gaaggttttc aaatttgacc cacgcaccat tcaaattttt ttttcttcct accgaacacg       120
     agctcggtcg gtcacgtgtt tgaaaaaaaa aacagaccct tgcgattgct atagtaaccg       180
     ctatgcagag ttcatccgaa acaccgtcat tgatgatgat gatgacgacg aagcgaaaag       240
     agaaacgaaa acaaacaaca tgtatattat gtatctatct gtcacttctt tccatgaatg       300
     aacggtgatt cagtcaacaa tatttactgt tttggttcac cgtttcacat actgcgtggg       360
     attgttttgt ttcgtatttc gtcggaaaag tggaagaact aaaatactta atgaaaaaaa       420
     agaaggtcta cctagtgcag aggattgtga atatcattaa attttgtaag tgataatgaa       480
     actttttctg gaatggatgg atactccacg aaaattaaag tgctgcaatg gacgcaatgt       540
     ttgttggtga ctgcatgatt ttgaataagg tgagtcataa acaatgattg atttcgttat       600
     gtactgggca tgaccaaagt ggtgttgaaa tattatccag gtaccgttat gcaaaacaaa       660
     gtgatcatct agatagtaca ctggaacaaa tagtgacatg gagataaaat aatgtttcaa       720
     tcaaatgtga tatcagatgt ttttgataaa aaattttgtg ttttctgact tcattagaat       780
     tgttgtagta ttctttgtgg aaggcggatt tcgtcaattt tgaagaaggc ggttttcgtc       840
     aagattttga aagacggttt tcgtcacaaa tttgaaaggc ggttttcgtc aatgagtgaa       900
     aaggcggttt tcgtcaaaag tttgaaagat ggttttcgtc acaaatgtga aaggcgggtt       960
     tcgtcaattg gtgaaaaagc ggttttcgtc ataactgtga aaggcggttt tcgtcacgaa      1020
     tatgaaaggc ggttttcgtc acaaggatga aaggcggttt tcgtcataac tgtgaaaggc      1080
     ggttttcgtc acaagtatga aagacggttt tcatcataac tatggaaggc ggttttcgtc      1140
     atataacagc agagaggcgg ttctcgccac aattaaaaat ttttgatttc gtaaattttg      1200
     catggaataa ataaataaaa aaataaataa taaaatgtgg ttttaattaa aaaaaaatac      1260
     tacttatgat gcatacttat ggaatcgcgt gaaaattata ttgtaattat ttgttgataa      1320
     agtttttgaa tcaatgttgt ttgaatggtg tgtttgggtc ctaaagttta tctagttttt      1380
     gactggatat taatgttaaa tcaaattttg atttttaatc aaaaatatgc ctccatacta      1440
     ggaacaacat ggatattcgc atcagaccgt tccagacatc attggaatct tcccagttac      1500
     cgttggcatg ggccaaatgg aagcgtgatc tcgaatgtta tttcgagtcc gaaaagattg      1560
     aggggcaata tgagaggcga tccaaactcc tttatctggg aggatcggat ttgagagata      1620
     tttacgataa tttacccgaa gtcgaatctg ttgcaatggt tttggcaaat cctccatact      1680
     atgatgctgc gattgcaaag ctggatgctc attttgaacc atatcgcagg cgaacctatg      1740
     aacgtcatct tttccggcaa attgcccaaa agccgtcgga acgttttgct gattttgttt      1800
     tgcgcttaag aacccaggtg aaaaggtgtg aatatgacaa accagaggaa ataattgtag      1860
     atcagatagt agagaaatgc ttctctgaca aactgcgaca aaagctattg aaacgggata      1920
     tgttgctagc cgaagttgaa agcctgggta tcactttaga agagagtgag cggaagatga      1980
     aggagtttgg gaaaaaccct tcatctggtg acccaatcag taaagtgacg aagtggaaac      2040
     ctgaacgtat acaacgtgaa tcgatgggta attaaaaaga tagattttgt tataaataag      2100
     ttttactatt gagacattta taggaacagg aagggtacag caatcttttc aagcgaagaa      2160
     tcgagctatt ccggtatgct atgcatgcgg aaaacgtggt catgtccggg gagctgagtc      2220
     ttgtccggct aagaatgcag cgtgtttaag atgcaaagga acaggtcatt ttgcaaaaca      2280
     atgcttgaag cgagtaaacg acactgctcg aaatgcagta ccatcgaaac gcatcagagc      2340
     tgttcaagac gtcgacgagc aggagaagga taaccgatac attttctacg ccatgggaga      2400
     aaatacattc atgtttgagg taggcggagt cgagataccc atggttattg attcgggtgc      2460
     agcagctaac attatcaacc agagaacgtg ggagcaaatg aaggagatgc aagtgtcggt      2520
     gtgggacatg actacggata atgacaaaaa tttcacctgt tacgcttcaa atgaaccaat      2580
     gcaaatttca ggaagcttca tggcaatgat cagtgctgga gaaaggaact tacaagcgaa      2640
     attttatgta gcgaaagcag gacaacagaa tctgttgggt gatcaaacag ccaaggcact      2700
     gcacgttttg aaagttggtt ttgacttggg tcacatcact gaaactccag aagcggaatt      2760
     tccgaagttc aaaggtatta cagtagaaat acccatcgac gatacggtcc aacctgtaca      2820
     acaagctttt cgtcgtgctc cgtatgctct cgaggacaaa gtgaacgaaa aacttcagat      2880
     gctgcagaaa caaggtatta tcgaacgagt aactgtacca tcaccatggg tttctccgat      2940
     ggttcccgtt ttgaaatcat ccggtgacgt acggctatgc attgacatgc gtcgggcaaa      3000
     ccaagctgtc ttgagggaaa cacatccttt acctctagtg gatgagattc ttgggtccgt      3060
     aaccggtgcg aaaatgtttt ccaaaattga catcaaagat gcatatcacc aactagagat      3120
     atccgaaaga tcaagaccta ttaccacgtt cattaccaag aacgggttgt tcaggtaatt      3180
     taaaagttta gtaaagcgaa aaaaaaataa acaattctac atctccaata tgtaatgaat      3240
     ttaaacataa catcttgtat tttctgttat actatacttt tctctagata taagagactt      3300
     atgttcggta tcagttgcgc tccagaaatt tttcagaaga cgatggaatc tattttagca      3360
     ggtttagaag gagtcatagt gtaccttgat gacatagtag tgtttgggtc atcgaaagag      3420
     gagcacgata gacgcttgca agcagtcttg aaacgtttaa aagagtataa cgttttttta      3480
     aatagtgaga aatgcgtgtt tggagcgaag gaaatcgaat ttctaggtca catgttaaat      3540
     gaacatggtg ttagtccaac agaaagccga gttgacgcga ttaaacactt cagaacacct      3600
     aagacagtag cagaactgag gagtttctta ggtttgataa catatgttgg acgatttatt      3660
     ccaaaccttg cggctaaaac ggaacctttg agattgcttc tgcgcacagg atccgtgttt      3720
     ttatggaaag agctccaaca aaaggctttc gacacaataa ttgcggcagt aggtgatata      3780
     agatatttgg gatttttcga ccgaaaaaag aaaactaagc tgattgtgga tgcaagtcca      3840
     gaaggtttag gagcggtgct tcttcaagaa aacgatgatg gacagaatca agttatttcg      3900
     tttgcaagca aagctctcac ggatttggaa cgaaaatact ttcaaacaga aagagaagca      3960
     cttgctatcg tatggggggt tgaaaagttc agtttgtatc tgcttggtac aaaattcatc      4020
     cttattactg attgtagagc actgaaattc ttgtttagtc ctcgatctcg cccgtgcccg      4080
     cgaattgaac gttgggttct tcgtattcag tcctataact atgaaattaa gttcgagcca      4140
     ggagcaacaa atttagctga cgcattgtct agattgtcaa ttagtagctt gaagcctttt      4200
     gacaagacgg cagaaaatta cattaatcgt ctggtggaca actcactccc agaagccgtt      4260
     actctcattc aagtagcgga agcaacaaag aaagatgaaa ctcttcaaaa gttgctagag      4320
     gcacttcgaa caggacattg gacagatgaa ttgaaggtat tcaagtgttt caaatctgaa      4380
     atacattcag ccaaagatgt tttgttaaga ggagacaggc tcataattcc aacagcactt      4440
     cgaccacaga tattacgctg tgcacatgat ggtcatccgg gcatgagtgt tatgaagcgt      4500
     cgtttaagac aaaaagtttg gtggcccaag atagacgatt gtgtcgagaa attcgtgaaa      4560
     cactgtgaat catgtacact tgtgtcagcg gtcggacctc cggaaccgat gtgtcgaacc      4620
     aggatgcctg ataaaccttg gtgtgaagtg gcgattgatt ttctgggtcc actgccgtca      4680
     ggacattctc tactagtact ggttgactat tttagtagat tcacagaagt ggtcgtgatg      4740
     aagcatacca caactgagtt aacgattcaa gctttattcg aaacatttag ccgtttcggt      4800
     gttccagaaa cgttgagatc agacaatgga ccacaattca taagcgaatc gttcaaatca      4860
     ttttgtcgcg agtttggtat agatcatcaa aagacaacac cgtattggcc gcaggcaaat      4920
     ggagaggttg aacgaatgaa cagtactatt ctgaaacgat tgaggatcag tcaagcagaa      4980
     aactcagttg attggaaatg ggatctgcgc agtttcctac tgatgtttaa ttccactcca      5040
     cattcaacga ctggcgaggc tccttcagct ttaatgttcg gcagagtgct ccgcgacaaa      5100
     attcctagta tccacaacgc gaacaaacca tggatcgagg gagtcaaaga tcaggattgg      5160
     gaaagaaaac taacagcagc agaatcaacg aaccgacaaa gaaatgctca acaaaatcag      5220
     ctagaagaag gggatatcgt ggtggcgaaa agaatagcaa aagaaaacaa actgtctacg      5280
     aactacagta gcgaaaagtt tcaggttgta aggcgacagg gatcggaggc tgaaattcgg      5340
     tcattagaaa caggtaaaat ctatcgcagg aatgtaaccc atctcaagct cattggtgaa      5400
     cgaccatcag aattggatac atcgaatctg actgaaaatc agataggaga accaccaagt      5460
     gtccgtcgta gtcatcggga aatgaaacgt ccagagtacc tcaagaacta tgtgcaaacc      5520
     ttattagatt aaaactattt tgtaagggag gag                                   5553
//
ID   Gypsy-495_AA-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-495_;
KW   Gypsy-495_AA-I; Gypsy-495_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-190
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-190
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3101-3101 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 190 BP; 54 A; 33 C; 40 G; 63 T; 0 other;
     tgtgatatcg gagacagatc aggttagcct tgatagaata atgtacaaga gagccagttt        60
     gaatcaggtg gttaacacga accggtcaat atacgagttg tactattcct aatcgagttt       120
     aatatattct cttgctattt ccgaaagtgg ttattgtgtc ttccggtatt tccgaatcat       180
     cgattctaca                                                              190
//
ID   Gypsy-496_AA-I repbase;    DNA;    INV; 5871 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-496_;
KW   Gypsy-496_AA-I; Gypsy-496_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5871
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5871
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3056-3056 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5871 BP; 1805 A; 1293 C; 1389 G; 1384 T; 0 other;
     ttggcgatcc tcccaggttt gccattaaat ggcaaataaa ttgcaaacct ggaaaaggaa        60
     atctaaaaac atgaatgaac attttccgcg gatcggtacg accgcatttc cggagaatgt       120
     atgttgcttt tgagagtgaa aagggacatt cactaaacat aaagtaaaaa aaaatgaaaa       180
     cgaggaacaa aatacctaat aatagagacg cttcataaat cgagacgacc gcaacatcat       240
     actatgcgat tctatagaaa ctcaaacgtt cgagtcggag tgaataggga catttactcg       300
     acactggtaa tgactatgta gggaacaaac ctgacttatc gactgaaagc catccctgat       360
     ctttgtaaag cttggtttaa aagattttga agtggaacgg gacatctact aacatagaat       420
     gcggtttgcg ttgaaatgag aggttatgtt tcctataacg aagcattcgt tactgacttt       480
     cttccgactt taatgctagt gcagcttagt gcgatgggac gtccactgat aatacgtatt       540
     ttctattaaa tacataaagc taatacaact gtccatcttt acacacccgt agatctgtca       600
     ttttgaaatg tctactcaag gaaaatacgt ccgagccgca gttaacggca atcacatgga       660
     agaaggtcat gatgactcat tctactccga tgagctgctt tcaaccgagc tcggagctgt       720
     agaagtgatc gagactgatg agatggagtc ttacgacgaa tctaacggaa ctacgccagg       780
     ttatgtgatg atcgatgaag gaagtcagtc caccattcag gaagagatag cagcgtccac       840
     gccgccaagt gatgcaagct tgcacgaaag aatagctcaa ctcgaaaagg tgatcgagca       900
     gctcaccaaa tcatcgcaac ctacgaaaaa caataacccg atcagcgagc acagtgtgcc       960
     ccccgcgcgc tctacagctg acgagccaca agggtggtca agcgccgggg agaataatat      1020
     cacgaatcac gttaacgcga acatccgttg ggagcatatt cctccattcc cgaaggacat      1080
     accggccaac aagctctggg aaacgtggaa gcgtttcctg gagaattttg agatcgcagt      1140
     gtcgctatct agcgtgtctg atccagccta ccgtgccaag gttcttttcc tatcaatggg      1200
     ccccgaatta caaggaatag tccgggcggc caagctgcgg ccgaacttgg agggacctag      1260
     ttgctactca acatttgtgg caaacataga tgtatacttg aagtcaatga ccgatacatc      1320
     atcagagcac gaagcgttta tcagaatgca gcaagtaaag ggcgaatcta ttgtctcctt      1380
     tcactctagg ctgacgcaga aggtgacatt gtgcggctat agccctgacg atcaggagcg      1440
     attcattcgt acacagcttc tgaagggcat gctgaacaaa gagttcgcca aaaccgctcg      1500
     cgttcttgac catgacacaa acttcattgt tcaatctgcc accagagacg aggcttatca      1560
     ggcagaaaat aagccagctg accaccttac tcaagctgtc aactcagttg ctcagcggcg      1620
     caacaatggg cgaaccatga agaagcgcac aagaccagta ggacaggcgc cgatgaagcc      1680
     gcttcacgga tcagaaagat atggtcaagg taggcgttca agatgttcca agtgcaaccg      1740
     tttatcccac gctgggaatg catgccccgc gatgaacaag gcatgcaaca attgcggcaa      1800
     aattgggcac ttttctgctg cttgccgaaa acggcgtgcc aaccatgtgc aggagatcac      1860
     cagcggaaaa cgattgcgag cagaatcgtc ggattccact gcagacgaga attcgcaaca      1920
     ggtatgatgt gttgttaaca aagttgagag ttcaataaag attacttcac cctacaaaaa      1980
     taaacaatta gcttattgga aatcatcaca ttgcagggaa taaacgcgat ttcggtcgag      2040
     gatgttctgg taaattgccg catcggatca tcgagcccaa taacctttat gattgactcc      2100
     gggtctgatg tgaacatcat tggtggttct gattgggaaa tactcgagca tcagttgcag      2160
     aataagctgg ttgatttgaa tctaattaat cttccacaaa accaggaact gcgcgcatat      2220
     gcagtcaata agcctatgcc ggttcgacat gccttcaaag cgcacattga agtagtgggt      2280
     atgacgaaac caacggttct agcggagttc ttagtagtag ctaagggccg tcgatccttg      2340
     cttggtagat caactgctag tgagatgagg ctcttagaag taggtgttgc agtaaataat      2400
     tgcgagaatt ccagcggcac gggggtcttc ccaaaaatgc cgggaattaa agttaagttt      2460
     agtgtggaca agacgatccc ccccgaaaag aacgcttatt ataacgttcc agcggcctat      2520
     cgtgaaggag ctaggcatcg tctggaagaa atggaagccc gtggcataat agaacgcgtt      2580
     aaggcagcac ccgaatggat cagcggaatg tcggcggtgc cgaagggtaa gaacgacttc      2640
     cgcttggtcg taaatatgcg ttcgccgaat aaggcaatta aacgggaata cttccgcctg      2700
     cctctcctgg aagagatgaa gatcaagtta cacggatccc gtttcttcac taaactagat      2760
     ttgagcaacg ccttctacca tttagaactt gctaaggaat cgcgggacct caccacgttc      2820
     ctcacggaaa acggcatgta ccggttcacc cggctgatgt tcggcgtgaa ctgtgcgccg      2880
     gaaattttcc agcgggaaat gtgtcggtta ttagaagggg tggagcatgt aatcgtttat      2940
     attgatgata ttctcatttt cgccgacact ttggaagaac tccgaaacac tacagcaaag      3000
     gtattgagaa tactacgaga aaacaatctc actctaaacg tagcgaagtg tgagtacgag      3060
     agaacgcaca tgaaattcct tggccacgaa ttagacaacg aaggattcca cgttgacgaa      3120
     gcgaaagtta aggatatccg caagtttcga gaacccactt ctgtctcaga gctccgcagc      3180
     ttcctcgggc ttgcctcgtt ccttagctca tacatcaaga actttgccga cattacgagt      3240
     cctctttggg cggtatgctc ggctaaatct tggttttggg gttctgacca aaagaacgcc      3300
     tttgaagaag taaaagagaa aattacaaac tgcacttcaa cgctgggatt cttctctgaa      3360
     aacgataaaa ctatactata caccgatgct tccccaaacg cactcggtgc agttctcgta      3420
     cagcaagatg gcaatgaacc accacgaatc attagctttg cttcgaaagc actaactgcg      3480
     actgaacgga aatatgccca gaatcagcgc gaagctctaa gcgcagtttg ggcagtagag      3540
     cacttcgcgt ttttccttct cgggagacac ttcacactac ggacagatgc agaaggaata      3600
     acgttcatcc taaaccggac tcgtgaaagc tctaagcgtg tgcttacgag agcagatggt      3660
     tgggctcttc gattaagtcc ttacgattat gacgtcgaat ttgttcgggg tcgggacaat      3720
     atcgcagacc cttcttccag attgtacgtt ggtgaagatg ctccgtttga tgacaaccag      3780
     agtccgtggg aaatagccac cctggaagtt aactgtacag gattcctaac cgaacatgaa      3840
     atcaagaaag caacttcacg agaccaagag ctacaggagg ttatgaacgc gctggaaagc      3900
     aatgaatggc caacagcaca taaaaggtat aaaagtattg cgagtgacct ctctgtgagc      3960
     gacggtattc tagtgaagaa cggttgcgct gtaatcccaa catctcttcg caaaaagacc      4020
     cttgaagtag cacatgaagg tcacccgatg gtggctaaac agaaaagtat actgagagag      4080
     cgtgtatggt ggcccggcat ggcttcagca gctgaagact gggtaaaatc ctgtcaaacg      4140
     tgtgccacaa acggtcgccc tgagaagcca acgccaatga gaagagttct tgcaccacag      4200
     gcggtctggg aaacgatcgc cttagatttc aatgggccgt attcaaaata cggtgggata      4260
     tccgtgttgg taatcgtaga ctataggtct aggtactgta tatgagttgt atagaagaat      4320
     tcgatatgaa acattccatt gttgttacag gtacatcatg gctcgtcccg ttaagacgac      4380
     aagtttcgag caaacgaaga aagtcctaga ggaaatcttt gagcgagagg gcttcccaaa      4440
     atgtatacgg tccgataatg gacctccgtt caatggagag gaatactcaa cttactgctc      4500
     acaaagagga attcagacaa ccttttcgac accgttattc ccccaacaaa acgggttggt      4560
     cgagaattac atgaagctga taaatcgagc gatgtctact gctatcacta ataacaaagg      4620
     cttcatggat gaattacgcg cgaccgttca cgcacacaat gctgctgctc acacagtgac      4680
     cggggttcct cccgaggaag ttttcttggg taggaaaatt aagcgtggat taccgctcct      4740
     ggtacataag aaagctgact atgatgataa tgttctcaac atgaaggatc aggaagcaaa      4800
     agaacgcagc aagcagcgtg aagatgcgcg gagaggtgct cgagagtgct gcgtcaaacc      4860
     aggcgatacc gttatagttg agcgttcgaa ccgtggtaaa ggcgatacac gatttgggcc      4920
     gcagcgatac actgttatgg aagaacataa cggaaacctc gtactaaaca atgacgggca      4980
     gatcctaaag aggcacgtca gccagacgaa gaaggtatgc gagtggcgat atgaaagcct      5040
     tgccaacgat ccccctactg atgacaacca aaaacgacca tctcgagaaa agaaagcacc      5100
     agcatatctg aaaaactatg tgcaatctgt agaagagtaa acctgaaata aacagagaaa      5160
     ccgattattc tcacctcacg gaagatctga atatcatatg attgaaaact aataaacata      5220
     aacaactata acttacctca ggaaatattc tgaatcgtcc agtttcgtga atgaaagaaa      5280
     aggtggtttg gttcggctgc agtaacgaga gttactacta ttagcacgac aaaacccacc      5340
     tatccttcca ccaagccttt cccgtgataa tttttacgaa ttatcataaa taaattaaat      5400
     tttgcaacac taggatggct aagagaatga ttgtttactt tttgatgacg gtgacgaaat      5460
     gagcaaacgt catcgcacaa cccagtgttg agtaaagtgc acaagtgaat ggcccactgc      5520
     aaaagaaatg gaattttcag aactacacgg aatcgcaaac tattcaagca taacaaacga      5580
     tttcatccta attcaaactt aagaggcaaa atattcccgt atgacgatgc tactaccgtt      5640
     tttcttttcg ttccttcgca agcattcggc gttagactca gcgacaagga aaatgagggc      5700
     agtaactggt gggttggtat tccatttatc attgatcggt tatgtgagcg cattgctttc      5760
     atagaagtag actgtataat aaaattaccc aaataactga caacggtatt cttgggagac      5820
     catggataat atattcctta tgtctttcct tagaggggag ggaaaggggg a               5871
//
ID   Gypsy-496_AA-LTR repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-496_;
KW   Gypsy-496_AA-I; Gypsy-496_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-240
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-240
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3102-3102 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 240 BP; 54 A; 76 C; 62 G; 48 T; 0 other;
     tgtgagatac tggtcaccct atgagagacg tcaactgaca caagcgatca cagccacagc        60
     acgattgccc ttcggcaccc gaagcatcac ggccgacagc gtgactgtac gatactcggc       120
     ctctttccct tgcagaccat cgtcgagact acacgcgtag gtgagttgct ccgcatggag       180
     cccatcggct tccgccgaac agtcgaccgt tcagttggcg atgttcggcg gaattccaca       240
//
ID   Gypsy-497_AA-I repbase;    DNA;    INV; 6534 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-497_;
KW   Gypsy-497_AA-I; Gypsy-497_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6534
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6534
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3057-3057 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6534 BP; 1924 A; 1391 C; 1590 G; 1629 T; 0 other;
     ttggcgaacc tgccagcttt tcaataaatt ttgaaaagat tcctggtatt attctctatt        60
     tcaataggaa ggaatcaccc tacagcatgc caaaacacag ttttgtttcg taattccaaa       120
     atcgtgaaaa gtgcaatggc ggcgttttgt ttgacaacgt ggaatggctt tgctatgacc       180
     actgttgatt ttgtgctctt aggcttctgt gaaaatatgt ttggagcaat ttatcgattt       240
     cccaaaaagt gtacataatt aatagtgaag tgatattaga atacgtaata gagcaacagt       300
     gttttaaact tcttcagaga tatttcccca ccacgacaac ggtgaatcaa gtgcttacag       360
     cgagttgttt gccggaaggg catagccctg gcaatgtccg ctgccgaaaa gcaaaaattt       420
     cgatgatcct gttgttttgc actgcgcaaa tgtcggatca agtgcttaca gcgagttgtt       480
     tgccggaagg gcatagccct ggcaatgtcc gctgccgaaa agcaaaaatt tcgatgatcc       540
     tgttgttttg cactgcgcaa atgtcggatc aagtgcttac agtgagttgt ttgccggaag       600
     ggcatagccc tggcaatgtc cgctgctgaa aagcaacaat ttcgatgatc ctgttgtttt       660
     gcacttcgca aatgtcggat caagtgctta cagcgagttg tttgcctcaa gggcattgcc       720
     ctggcaatgt ccgctgccgt aaagtataaa tgttgacgat cctgttgttt cgcactgggc       780
     aaatgtcgga tcagttgctt acagcgagtt gtttgcctca agggcacagc cctggcaatg       840
     tccgctgtcg aaaagcaata atttggatga tccggtttgc actgggcaaa tgtcggatca       900
     ggtgcataca gcgagttgtt tgcctcaaga gcatagtctt ggcaatgtcc gctatcgaga       960
     aacaaaatgt tgttgatcct gccgttttgt ttcgtgcaaa tatcggatgg agaagttaca      1020
     gggagttgtt tgccattgga gaaaacccct ggcaatgtcc acagtctgaa agaaatgtct      1080
     tgaaatcagg cgattctaac gaattgaaaa cgagattgcg tttagcaaga atatgattcc      1140
     aatgacgctc atcgaaacag acctgagttg gataattcct cgcacgaact atctggatca      1200
     aacgaaatct gtttgttgca cttttacggt tgacgattat tacgacttta ccaatgtctg      1260
     tttgcaaaca agtattcata cagatcctcc taaaatgttc cgattgcaga gtatggatta      1320
     ccgtgattac cagagcgaga ttggaaaata cgtgcgggca cctgtagagg agcccgatga      1380
     gctgccagaa gtgggagcag aagttgaggt cgaggacgaa tccgacaatc aacagaatga      1440
     cgagacgaac attgtgagcg gaaaaccgga agaacccgat cgtatcgaga gaaccaggtc      1500
     acgaccgatt gaaaccgcca cgcgtggtcg tgaaggtgag acagctcagg ctaactcatg      1560
     gactcgagac aaattggcac gaagaaccga cccaataaat atccgctggg agcatctcaa      1620
     gccatttccc aagggggtac cctcgtctaa gctatgggga acatggcacc gttacttgga      1680
     gacttttgag attggtgtcg gattcagcaa cgccaacacg caggcggaca tgtgcaggct      1740
     gctttatttg gcgatgggcg aaaaaatgca agaaatggta cgcgctgctg aacttcgccc      1800
     cccactggat gaagctgatt gttacaaccg atttgtgaac aatatcggcg gctacttgaa      1860
     gtcgatgaca gacccagccg ttgaacatga agcgttcttg agcatgcgtc agctagacgg      1920
     tgaatcgata gtccgtttcc atactcggtt ggtggagaaa gctcagcaat gcgaatatag      1980
     ccccgcacac cagacctggt ctgttcacct tcagctccta aagggcatgc gtaaccagga      2040
     actggccaga tatgcaagag tgtacaatca cgatactctt tttgtcatac aagcagccac      2100
     tcgcaatgag gcgtacgaaa ttggattaca atcgagctcg tcagcaggac cttcggccac      2160
     actggccatg gagaaaacgt cggaaaagcg tatacagtcg tcgaactcca gcgcaggcgt      2220
     taagcgggac aggaacttca gatctggaca ggatgatacg acaaggaaac gattcaagcc      2280
     gtcttcatcg gaattgtgca aacagtgtgg gcgtttagcc cataaaatcc gggctatgtg      2340
     tccagccaag aatcgttcgt gcaacaactg cacgaagcgc ggacattttg cagcaatgtg      2400
     tcgaacgaaa cgagtcaaca atacggacga ggatcaacaa gctatggcag tcgagcccag      2460
     caaacatgag catgaggtat tgccttaatc agtggattga tatttagttg ttgatgttat      2520
     aaaaataaag cattattgca aaattacaaa gaatataaaa ccttcgttac ttttctcctt      2580
     ttattacagt ccgcacattt gatctcttat caggacgctc tggttagttg ccagatagga      2640
     agttcaatga tagagttcct tatagattca ggatccgatg tcaatgttat cgggggtcgc      2700
     gattgggaac aactgaagct cgacatggca tcaggtcgaa caaacatcaa gccgttggaa      2760
     aacgatacgg cttttaaagt tcatgcgtat gctaccagcg agccgatgaa aatccagcat      2820
     tcctttagag ctacagtgag tgcggttgga ctggctaaac ccaccgtatg ggccagcttc      2880
     ctagtggttc caaatggacg ccgttctttg ctaggcagga aaactgcggg tgaaatgaag      2940
     ttgttgcaag ttggagcaaa cgtaaacgct tgcaagaatt ccgagcagcc atctccgttc      3000
     ccaaagatgc cgggagtcag ggtaaagttt agcgtcgata agtcagtccc accggtgagg      3060
     aacgcatact acaatgttcc tgctgcctac cgagaggcag ctaggaatag gctacaggat      3120
     atggaagcga aggacatcat agaaaaggtc tcagctgcgc ctgaatggat cagtggaatg      3180
     tccgctgtcg caaagggaaa gggggacttc cgcttggttg tcaatatgcg tgcagcgaat      3240
     aaggctatca agcgggagta cttccgacta cctccgataa acgaaatgaa ggccaaactt      3300
     catggtgcca aatatttttc aaaactagac ttgtcgaacg cgtactacca tttagaattg      3360
     gacaaagact ctcgagaact tacgacgttt ctctcggaag acgggatgta ccgttttaag      3420
     cggttaatgt ttggagttaa ctgcgctcct gaaatctttc agcgagagat gacgagaatt      3480
     ctaaaggatt ttccgaatgt tatagtgtac atagacgaca ttctgatttt cgctagctcg      3540
     ttgtctgaac tgagaaaaac cgtggcacaa gtgatgcagg ttttaagagc gaacaacttg      3600
     acgataaacc ctgataagtg cgagtttgat aagagcagtg tggcttttct cggacataaa      3660
     ctagacgaac agggattcca tatcgacgaa gaaaaggcaa aactcattcg ggacttcaga      3720
     cggcctacga cggtatcgga actacgcagc tttctagggc ttgcttcgta tctaagtcct      3780
     cacattaagc acttcgctga cttgacgaga ccattgtgga aggttgcagc aaagaacagt      3840
     tgggcttggg gttccacaca aacggaagca tttaacgccg tcaaggaagc catcgccaag      3900
     tgtacggtta cgctgggtta cttcaatgaa actgatagaa cgatcctcta cacggatgct      3960
     tcaccgaatg cgttaggtgc gttcctggtg caggtaaatg cgaatggcct acatcggatc      4020
     atcagtttcg cctcgaaagc cctaaccgag acagaccgcc gctacgctca aaatcaacgt      4080
     gaagccttgg gtgccgtttg gggcgtagaa tacttcgcgt attttctttt gggaaggcat      4140
     ttcacactgc gagtcgactc gaagggtatg tcgtttatcc tcaatcgctc tcgcgaggac      4200
     tctaagaggg tacttacgag agccgatgga tgggcactac gactcagccc atacagttac      4260
     gatgttgagt acatcaaggg aacagataac atcgccgata caccctctcg cctgtacact      4320
     gggaatgacg aaccattcaa cgaaaactcc agtccgtggg agatcgctaa gcttgaagtc      4380
     agcacagcag gattcctgac ggaggaggag attagagagg caaccgccaa cgatcagacg      4440
     ctttccgaag ttatgtcagc tatcaattct gaagaatggc ctaaaaagct tagaaggtat      4500
     cagcaggttg cttcggatct gtatatttct aatggtttgg tagtcaaaaa tggatgtgtc      4560
     gtcattccta acgcactaca ggaaaagact ctgcaagtag cccacaaagg ccatcctctc      4620
     gctgcgaaat tcaaaagcat tcttagagag cgtgtttggt ggccaggaat gcctggagat      4680
     gcggaaaact gggtaaaagc ttgccagatc tgcgctacta atggtaggcc agagcgaccc      4740
     accccgatgc gacggaaatt atctcctgat actgtatggg actccattgc agtggacttt      4800
     aatggcccat acgccaggtt tggaggaatc tatatacttg tactagttga ctacagatcg      4860
     aggtatgtaa tagctcggcc ggtcaaatct actagtttcc aacacacaaa gacggttttg      4920
     gaagaagttt tcgatcgtga gggttttccg caaaccataa aaagcgataa tgggccgcct      4980
     ttcaacggtg acgattataa gtcctactgt tcgcaacgag gcatcaaaac cgtgttttct      5040
     acaccgctgt tcccgcagca gaatgggtta gccgagtctt acatgaaatt ggttaacaaa      5100
     gtaatgtcgg ccgccgtgag ctctgggaac aactataatg atgagctaca agccgtagtg      5160
     agggctcaca atgcagccac acacaccgta accaacgttc caccggaaga agtaatgctg      5220
     gggagaaaaa tcaaacgagg tcttccgctt ctgaatcgaa ccaaatccca acacgatgag      5280
     agtctactga ccatgcgaga tcgcaacgca aaacttcgag gaaaagctca agaggattta      5340
     cgccgtgatg ctcgggaaag tcgcatcaag cccggggaca ttgtgattgt ggaaaaccaa      5400
     aaccgagcga aaggtgattc aagatttgca gctacacggt acacggtgct cgaagaggtg      5460
     aacggtactt tactgctagt cgacgacgat ggagctacat tgagacgaca cattacccaa      5520
     acaaagaaag tctatgaatg ggtacaaaac caaaaatcac gaaacgataa tatcgaggat      5580
     gccgacgagc tcggaggtat gtccggaacc aatgagcggc ctagaaggga caaaaaagct      5640
     cctgggtatt tggaagatta tgtccaagcc gtaaatcaat agctatcgtt ttgccttgag      5700
     ataatcgtac aagaaaaact tcttattaaa tgaatttgtg taaactgcca gggtgaatgg      5760
     gtcacgaaaa acgtaaataa acctgaacag ctaaaacctg aaacgaaaag aaaactacat      5820
     tagtacatta cttcaattac ctacttaccg gttgattttt ccttccaact ttaagagcct      5880
     aacgtgagac cttaatgtct tcaaagaaat ggtaacttta aaataaactt ttctccgaaa      5940
     tggaaatcta gtttatttgt ttgaatacgg ctactagact gatggacaga aaactgccct      6000
     atctgctttg gtactgttcc gtgcctttca ctgttattga ttgcattaat ttgaagtttc      6060
     tagagctatg tgtttactaa aaaagggtga aagaaaatgt ttacgtcgat acagttgaag      6120
     tttctagagt tttgtgttta ctaaagaaag aatgtgatgt actaagaacg ctaccagagc      6180
     aaaacaaacg ctggacttga cagcttgctc cgcttgcacg ctgttcgtga tttaccattt      6240
     tctgctcagt tttaaccctt aatacataca ttgatggtcc cctggcggag gatggcagaa      6300
     ctacgataca ctgggaaaat aatccactta gcacccatag ttagtggaaa gtggatgatt      6360
     cgcgagtcaa acatagaaaa agacattttt tcccatgtgc aaagggaaac ttattttaaa      6420
     tagatgtagt gacagcaaca tttgaattca agagaaaatg tagtaaaaat aaagtattaa      6480
     cgtacatttg acatttactt acttttttct gtaaatttgt gagaagaagg aaga            6534
//
ID   Gypsy-497_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-497_;
KW   Gypsy-497_AA-I; Gypsy-497_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-229
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3103-3103 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 229 BP; 68 A; 50 C; 54 G; 57 T; 0 other;
     tgtgagatat agatggcacc acgatagaca atacacagat gtattgccat cactggaaac        60
     ataataagca agtcgtgaat gttggtatcc ctgagcgaac cggacgctca ggtatttccc       120
     gctcatcatt actgaacgct gcctcatttg tgaacggaca atcggcaggg taagatgtgc       180
     atattcgctg gagggtgatt ccttttacta gagaatataa agccccaca                   229
//
ID   Gypsy-498_AA-I repbase;    DNA;    INV; 5777 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-498_;
KW   Gypsy-498_AA-I; Gypsy-498_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5777
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5777
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3058-3058 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5777 BP; 1766 A; 1321 C; 1310 G; 1380 T; 0 other;
     ttggcgatcc tgccaggctc tttttacaat actagtggaa ccggattata caattatgaa        60
     gggaatagcc cagacgctgc atttttaaac atgttttttg ttcagagttt ggtggttgtt       120
     caaagataaa agaagaagtc catggcgtga cgggatgtcc gcgcacaaaa ttgactcagt       180
     ttaaagcaat gctcgaaaaa aagcccttgg cgtgacggga tgtccgcaaa atttgtgctt       240
     aactcaaaac tgttctcggc gcgacgggat gtccgcaaag cttgtcctga atttcaaaac       300
     tgttcatggc gtgacgggat gtccgcaaag aaaaatctag ccctattgga aaatttttga       360
     cgcttcgatt gaataaacct ccaactcaaa aaacaaccct tatgtcaatg aaatttgaaa       420
     aaatatcagg atccaacaat ctttcaaaat agaaacgaat cagaaataat aagtataatt       480
     atataagtcc gttaccagtt gtgtttttac agatcgcaaa ttgattccat ccagaatgtc       540
     tagcaacgga aaatacgtcc gtgccccgaa gtttctgcac gcgcagacca gtgatgagga       600
     gagtgagccg aatcatccgg atgatgccac cacatcgagc gacgaggata gtgattgcga       660
     ctccgcaagc cacttcgtat ctccctccga agatccgcca tcccaacatc aacagtccag       720
     cttcggccaa aacaccacaa gcaacaatgc aagtgaagtt tccgccaagt ccagaaacag       780
     tgagccattt tcggatacaa acgagcgact ccaaaggatg gagaacgctc tttcggacat       840
     gaccaaagca ctcaactctt tgcaaacaat gcaacctccc cccgtgacaa accaagactg       900
     gtgtacgtcg tacatgcaac caagcaactc gccgaatatt actttgccga gtattcggtg       960
     ggataacatc aaacccttcc cagctggggt acccgccaac aaaatgtggg aggaatggaa      1020
     ccgatatatc gagaatttcg aaatcgccgc ctccctcagc aatgcgaatg atcccgttcg      1080
     cagatcacaa cttctcttcc tttcgattgg agacgagttg cagaacatcg tgagagcagc      1140
     gaagcttaga ccgagcttgg acgatgcgaa ctgctatcgg aatttcgttt ccaacatcaa      1200
     gaaccatttg aaggcaatga cggatccagc tgccgaacac gaaacgtttt tcaatatgcg      1260
     gcaaggcaaa actgaatcgg taagttcatt ccatgcccgc ctaaccgcga aggcgttgga      1320
     atgtgaattt agtcctaacg atcaggacaa attcatacga ccgcaactat tgaagggcat      1380
     gagaaatagg gaactagtga aaacggcaag gacgtacgcg cacgacatta acactattgt      1440
     actggcggcc acgcggaatg aagcatatga aacagagatc gcgaatcact cagcaaccca      1500
     tagttcggag ccgtatgtga ttaatcgcat acatagacag agctcaagcc aaccaccaca      1560
     acgcgaatcc ttcagaaaac gttccgggcc agaaagcttg atagacaggt cgcaaccgaa      1620
     gcgtttccga gatcatcagc aggcgcctcg aagagatcta caggaccgtg gacggcgtac      1680
     tcgttgtcgg cgatgcaaca gcttcccaca ttcgaactat ccttgtccag cgttgaacag      1740
     gaactgtaac tcgtgcggag aacgtgggca ctacgcagcc gcatgccggc gatcacgagt      1800
     tcgacagctc caagttcaac ccaacgagtc tccgaatcgc gataatcacg tcgatcatga      1860
     tcaggtataa cacgctcgag acataaatgc gcaataaatt ttgttttgtt atttctaatc      1920
     caatgcacat ttgttttaat attatagcac gtgaatacac tttcactcga cgacgtttta      1980
     gtcgcctgtc gtctcggctc atcaagtcca ttcaaaatgc tcattgactc tggtgcggat      2040
     ataaacgtta ttggtgggag agactgggtt cgcctaaaac aagagcattt gtcgggtatc      2100
     gcaaagttga acataatcaa aaattccaac aagaaaaacg tccttgcgta tggaactctg      2160
     actccaatgg tagtagaatg tttgttcgaa tctgaaatca ttgcaccgga tcactatggc      2220
     cgacctacaa aagcaatttt tcatgtaatt cgtaacggat cacggtcact cctgggtcgc      2280
     tcaactgcca gtgacatggg acttcttcac gttacaacta ccgttaacaa tgtcgaaggc      2340
     gatggcaaga cagacgtgtt cccgaaaatg cctcagatta aggtgagatt cagcgtagat      2400
     aagaatgtac cgcccgttaa gaatgcgtat tataacgtcc ctgcggctta ccgtgaggca      2460
     gcgaagttac ggctagaaca aatggaacgt cagggtatca tcgagaaggt tacaagtgcc      2520
     ccaaactgga tcagcggaat gtcagctgta gccaagggta agaacgactt ccgactggtg      2580
     gtgaatatgc gggcacccaa tagagctata aaccgagagt attttcgact tcctctactc      2640
     gacgaaatga aagtcaagct ccacggtgca aaatttttca ccaaacttga cttaagcaat      2700
     gcattctacc atctggaatt gcacaacgaa tctcgcgacc ttacaacatt tttaacagag      2760
     gacggtatgt aatggattag ccacttatgc ctagtccttt tattcatgtt cacttgattt      2820
     ttttttccag gcatgtaccg attcacaagg ttgatgttcg gggtgaattg tgcccccgaa      2880
     atcttccaaa gggaaatgtc gcgaatcctc aaggaagtca aaaacaagat cgtctacatt      2940
     gacgacattc ttgtttttgc agacagccta gagggtttga ggaaaactgt ttgcaaagtt      3000
     ttggaaatac tcagagcgaa caatctaacg ctcaatagag caaaatgcga attcgataaa      3060
     acgcggattg acttcttggg ctttgagctc aatgaacacg gtttcaacgt agacgacagt      3120
     aagataagaa gcatacgtaa cttccgagag ccctctacga tatctgaact gcgaagcttc      3180
     ctgggtttgg cttccttcat aagtccacac gtcaggaact ttgcggacat caccagccct      3240
     ctttgggaga ttgtagctgc aaaatcatgg acatggggac ctcggcagcg gcaggccttt      3300
     gaatcagtca aagaaagaat tctagactgc tgcgtatcgc ttggattctt ctcagacgat      3360
     gataagacta tcgtttatac agatgcgtcg ccggtagcgc tcggtgctgt tttagtccaa      3420
     gaggatgaga gcggcgttcc gcgaattatc agcttcgcat caaaatccct taccgctaca      3480
     gagaagaaat atgctcaaaa ccagcgagag gcccttgcag cagtgtgggc cgttgagcat      3540
     ttctcatatt tcttacttgg tagacggttc acattacgca ccgatgctca gggagtgtcg      3600
     ttcatcctca accgaactcg agaggaatct aaacgagctt tgacgcgtgc cgatggttgg      3660
     gcgctgcgtt taagtccata caattacgta gtcgagtacg tccgaggatc acagaacatc      3720
     gccgattctc cttcacggct atacgttggt aacgacgaac catttgatga ctcatcgagc      3780
     ccgtgggaga ttgcacacct ggaagctaat gcagtagaat ttattaccga cgatgaaatc      3840
     aaatcagcta cgactaatga caagactctt caagccgtga tagaagccct acattcagaa      3900
     caatggcctt ctaagttaca aaaatatcag cttctccaaa acgatttgta ttctcaagat      3960
     ggcctgttga ttaagactgg ttgtgtagtt gtccctgaaa ctcttcagca acgcatacta      4020
     gaagcaactc atcaaggaca tccctcggca gctaagcaaa aaagcatact gcgacgacgc      4080
     gtgtggtggc ccaacatggc aagcgacgtt gcaaagtggg tagagtcatg ctcttcatgt      4140
     gcagtaaacg gtagaccaga aagacctact ccaatgcagc gcatacaggc tccaaagaca      4200
     gtttgggaga ccatcgcact ggattttaac ggtccttatg tgaaattcgg tggaatttcg      4260
     gtcctcgtca tcgttgatta ccgatcaaga tacttgatag cccggccggt caagtcaacg      4320
     agcttcgaga gtaccaaaaa agttttggaa gacgttttcg agcgagaagg tttccccaga      4380
     tcaataaaaa ctgataacgg accgcctttt aatggtgacg aatacaagcg tttctgcgcg      4440
     gaacgatcta tcaccacgat cttctccacg ccgttgtttc ctcaacagaa cggactcgtg      4500
     gagagttaca tgaaggtcat aaataaagcc atgaccattg ctgcaacgaa taaaacgaac      4560
     tatgtcgaag agctacgcaa atccgtccag gcccataatg ccgcggcaca cagtgtgact      4620
     aagcttcctc cagaggaagt aatgactgga cggaaaatta aacgtgggct tccactactt      4680
     gacttcggga aggcggatat cgatgacgag ctgctatcga aaaaggactg ggacgctaag      4740
     ctagcagcaa aagatcgcga ggatcgacgt cgcggtgcac gaccgtgcca ggtgaagcca      4800
     ggtgatgtag tgatagtgga aaatcacgtg cgaccaaaag gggagtcacg gttttctacg      4860
     aaaaagtaca ccgtaaccga agaaagcaac ggcagtttga cactgtgtga taaagaaggt      4920
     gtcgtactga aacgacatgt ctcacaggtt agaaaagtgt ctcgctggcg tgacgaagat      4980
     caatctgcga atacggagaa ccaaccagga tctgcaagag gttcaggctg tcactttgaa      5040
     gaaattatga acccagagca tcaactcgaa tccagcaaag catctgattg gcaagaggta      5100
     acagaatctc ggaaggaagt agaaggttcg gaatatcttt cagaacccat aaaatccgac      5160
     gtcaatctcc gagctcgcaa acggactgct ccttcgtacc taaaggatta catcaggaat      5220
     ttggaagaac agtagacgta acagtcgaac tgtagaacat cctaaaataa acaaaataaa      5280
     cgttgaacta taactttgta ttatcatatc ccttttggga aacaaacccc ttattcatgt      5340
     agtgttatcc tagatccaaa agttttggat cgaatacagg tccagtgcaa tccaatgtag      5400
     cgatccaaag gtttttgatt ggcttggaag aaacaaacct actgaaatca gcttcgtctt      5460
     tgtcgtggat gcagtaatta aattacaaat tttgttgttc tccacagaga aggcaaaaca      5520
     ttaaagttta gacgtttaga ccgtgggagt tagatcgatg taaacaacaa caacaatgag      5580
     ttgtcaaatt tattcccacc gaaaataatg ttgagtacaa cagctacccc acagagaaag      5640
     agatgttcac gtcggaacac ttacacggaa caaaaaatct accaaaaaga tgaaattcgt      5700
     ataccgtttt ttctttcttc agaaatataa gttattttta tgacgagtaa aacttttttt      5760
     ttcgagaaaa gggggaa                                                     5777
//
ID   Gypsy-498_AA-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-498_;
KW   Gypsy-498_AA-I; Gypsy-498_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-249
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-249
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3104-3104 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 249 BP; 68 A; 62 C; 55 G; 64 T; 0 other;
     tgtgtggcat gcattagagt gtttgtcgac agtgtacagt gtactgaatg tatacacctt        60
     aattgtcaac aagcttggaa aagtcgacat gagatatatc gacagacgct cgacataaca       120
     tcggcgagcc cgccaagaag tgcccagcaa cagcctcttt ctcgtccgac aactccaact       180
     ggtaagacct ctttttataa ggcacgtcat ctcagcgctg ggtttattcc tttcacacgg       240
     aagtgcaca                                                               249
//
ID   Gypsy-499_AA-I repbase;    DNA;    INV; 7136 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-499_;
KW   Gypsy-499_AA-I; Gypsy-499_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7136
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7136
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3059-3059 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 7136 BP; 2143 A; 1428 C; 1560 G; 2002 T; 3 other;
     ttttggcgcc caacgtgggg cccgagaaca gttagtagtt cgtgaatttt tgaatttaga        60
     agttggttgg aattcgaaat tttaagttgt aaatatttgc ttgtaaattt gtacctggat       120
     tgcttattct gaactcaatt atattcgtat cgtattttgt ttttcttaag tttcggttat       180
     atttgaagat tcggtattta gtgattcaat tagttcgata aggtattcgg ttttgattag       240
     ttatattcgg tttcggttag ttgtattcgg tttgataata gtgcataagt gatttttttg       300
     gttcaatttg attttttagt gattaagtga atatttttct actagtgaat ttgaattttt       360
     tggtttgttt gacatggagt cgttcaaaat taatcctaat catttagatg aaagtgaagt       420
     gaattatgag ttggcagtaa gaaactgtat gctcactgga tccgtcgaaa atcgtcgacg       480
     agatctacga gtagtttttc gtgatccgga ttcggaaaag tacgttagtg tgactgaagc       540
     aatgatgact gatgaccttc gggaagtacc gagaaaacta aaagagatcg cagatcttct       600
     gaatgaggga ccacacccga cctgcttctc caggttggtt cattattacc atcgtgttcg       660
     caggtacacc cctcgtacta ctcagcaaca agaagctctg catagtttgc tggaaatgat       720
     ctcgaaaatt gcgaccactt attttgctac tgggttggac gaaaccgtcg gccagggacc       780
     gagtgcggag tccacaaccc atggaaaccc ttctgacgtt agtccgcagg agaatcggat       840
     tggaggtcaa cttttgacga ggcccaatct tggtgataat gagacgctca ggaacgtgca       900
     gcgaaatcct ggatccccgt ggctgatgag ttgggatgag actgaaggag ctgtgggtgg       960
     aaatccggag aaatcggaga gggacattgc caaggtgata cccgcgttag tggaagacct      1020
     gctgaatttc cgacaagctg aaccggcttc gggttcaggt acggtcccac gccaagtcga      1080
     gtttttcaat accttccaat cgaatccatg gacccttcga gttccttcgc tgccggcaga      1140
     ggaaactcag agtaccactg gtctttctaa cttccaagga ttggatgcag gggcttcgaa      1200
     ccgttcaatg aaccagggtg aaaggcttcg atcgcctgcc caaccaccta tcgtcgaaca      1260
     agcgacttcg agacagtatt ccaacgattc gggcaccgta cgtattaatg tgcctcagca      1320
     aagcagtgaa tacattcacg tctctgaaat agaaacatac attaaaaagc gtgtcgatca      1380
     gattattcgt caacagatgg gtatttctca agttcaaaac tcgtctgtgg aggcaataac      1440
     ggccaagatg gcgaatgcta gcattgatcc tagaattaat ttagatcatg cagggctttc      1500
     agctaattca gatgtacttc gaagcggtat tcccgttcag cgagcgatgc ctgatccttc      1560
     gccgccacta cagttatctg gatacgctac tgggacatat cacaatcctg cgttaggaca      1620
     agtttctgga actggacgaa gttttcctac tggagaacca ttcatgaaca gaactagatg      1680
     ctctacacct cggaatgagc aaactgcaaa tcttgactat tttccaggtg gtcaacgaaa      1740
     ttctttgcag ttaccaccta gtggatactc gagacgattg ccgcatcagc aatgtagtat      1800
     tattgagaaa tggccaaagt ttacgggtga ctccaacgct gtccctgtca cggattttct      1860
     aagacaaata aacatccttt gtagatcgta cgatattacg aaacatgagt tgaggatgca      1920
     tgcccatttg ctcttcagag acagcgccta cgtctggttt accacatacg aggagaagtt      1980
     tacatcgtgg gaaatgttgg aagcatacct aaagatgagg tacgataatc cgaatcgtga      2040
     ccgtatcatt cgagaggaga tgcgtgcccg aaaacagcga ccctctgagt tgttcagtgc      2100
     atacctgaca gacatggaga tgctcgcaca acgaatgatt aagaaaatgt cggaggccga      2160
     aaagttcgaa ataattgtag aaaacatgaa gctttcctac aagcgtagac tagcccttga      2220
     accaattcac tcgattgagc atctggctca actctgcttc aagttcgatg ctctcgagtc      2280
     caacttatat tcttgttccg ttcaacctcg tccagccatc catcaagtgg aatgtgaaga      2340
     tgatgtcact ggagagattt tgaatggtga agaagtagag gaaatctatg cgttgaaagc      2400
     taaaatgggt agaggatttg gcagagctaa accaaatgct gagacaaact cagagaagac      2460
     caagcaagcg atctgttgga attgtcaacg tgtaggacat atgtggaagg attgcgataa      2520
     gcgcaaaacc atattttgcc atatttgtgg gttgacggac actacggcct acagatgtcc      2580
     gaataaccac aatttgggtc aacaggaaga attgccaaaa aactaataaa acagggcaat      2640
     tccgggaatc cttgccctcg taaccataat caagagattc ccaatcccaa ttacgacata      2700
     ttcaacagta tccatcacat aaacactacg ttttacaaat gtccgcattt gaaagtgaga      2760
     attctatccg aagagatcga agggttagcg gacaccggcg ctagtttatc tataataagt      2820
     tcagtgaacc ttatcaacaa gctaggactg aaaattcacc ccatcccgct aaaaatatcc      2880
     actgctgacg ggacagccta tcgttgtttg ggttatgtta atgttccctt ttcctatgaa      2940
     caggcgaccc atgtgattcc aacgataatt gtgcccgagg tcacaaaaac gttgatttta      3000
     ggagttgatt ttctgactaa atttgggttt caattagtgt cgtctggaac tgaaaacaca      3060
     aaaaaggtga agagtgacca cactaatacg gatttaacgt tcgctgaaga ttatttcgga      3120
     gatcgcaccg ctagaatctg ctttcaatta gaaccatatc cggaaattac tgccgtgagc      3180
     accgcaaatg aaattgtaga cgaaagtttg gagatgccta ccgtagagtt gcccaagaaa      3240
     tcactcgaaa cagttaaaga tctgattacg gaacatacac ttaaggaaaa agaacaagaa      3300
     gccctctacc acgcgattaa aagattacca gaaactcgag aaggacagtt aggtcgtacc      3360
     aatttaatgg aacaccgaat agaccttctt cctgacgcga aacctagaaa agtttcgtat      3420
     tatcggtggt ctcctagtgt agagaaggta atcgacgcgg aagttcaacg gatgatggac      3480
     cttggagttg ttgaagagtg ccaaggacct gtcgacttcc taaaccccct ccttcctatt      3540
     aagaaaccaa acgggaagtg gaggatctgc ctcgattcac gaaaactcaa ccagtgtacc      3600
     aaaaaggatg acttcccgtt ccctaatatg atgggaatca ttcaacgcct cccaaaatcg      3660
     aaattctttt ccgtaattga cttatcagag agttactatc aggtaccctt agaggtctca      3720
     gcaaaagata aaactgcmtt tcgcacaaat aaaggtttgt tccggtttgt agtcatgcca      3780
     ttcgggttga ccaacgcacc tgcaactatg gcacgattga tgtctcgcgt gctcggacat      3840
     gaccttgagc cttacgtata tgtttatctg gatgatatca taatagtctc caatagttta      3900
     gaagaacata ttcgtctaat tcaaatcgtc gccgaaagac ttcaaagagc tggactaact      3960
     atcaatcttc agaaaagcaa attctgccag aagaaaataa cgtacttagg ctacgtgcta      4020
     tcagaggaag gattgtcgat ggatgtaagc aaaattcagc cagtcctcga ctacccggta      4080
     ccgaagactg ttaaggatgt ccgtcgtctt cttggacttg cgggttttta tcagaaattt      4140
     ctgtcaaatt attctgagat tacaacgcca atcaccaacc ttcttaagaa aggagctaaa      4200
     aagttcacct ggacagtgga agctaacgtc gccttggata agttgaaagc tgctttagtt      4260
     tcggcgccag tattggccaa tgctgatttt actttgccgt tcattatcga gaccgatagt      4320
     tctgatttag cggtaggtgc agtactggtc caggtgcaaa acggcgtaag aaagcctatt      4380
     gcctactact caaaaaaatt gtcaagcaca cagaggcgct acagtgctac tgaacgggag      4440
     tgtcttgcag ttcttctaag tattgaaaac tttaagcact ttatcgaagg atcccaattc      4500
     ataatccaaa cggatgctat gagtttgact ttcttgcaaa ctatgtcgat tgagagtaag      4560
     tcagccagaa ttgcaagatg ggcccttaaa ctctctaagt acgacatgtt attgcaatac      4620
     aagaaagggt cagaaaatat accggcagac gccctgtcgc gtgccgtaaa tcacgtcgtc      4680
     gttgtggatc cctatattga tcaactgaag aaaatgatag aggcccatcc ggaaaggtat      4740
     tctgacttcc aagtgtgtga tgaaaaaata tacaagcaca ttcacaatgc agcaattgct      4800
     gaagatccct gtttccgttg gaagtatgtt gtcccagtgg tggaaagacg tgcaattatt      4860
     caggcgatac atgaagaagc tcacctaggt tttgttaaaa ccctggcgaa agttcgcgaa      4920
     cgacattact ggccgcattt ggcagctgac gttaaacgtt tttgtagcca atgtgaagtc      4980
     tgtcgagaat caaaaatacc caacatgaat gtgaagccaa tatgcgggaa gcctaaatta      5040
     tgctcccgac catgggaatt aatttctatg gatttcctgg gaccgtaccc acggtctaaa      5100
     aagggtaatg tttggttgct cgttgtaagt gacttcttct ctaaattcgt cttaatacag      5160
     tgcatgagga ctgcgacagc cgctgctacc tgtacatttg tcgagaacac tatcttcaat      5220
     gtgtttggag cgcccagaat ttgtattacg gataatgcta ccgtattcaa gtctgaatta      5280
     tttcagaaac tgctagcaac atattctgtc actcactggc cattatcggt ttatcaccct      5340
     agccccaacc cagctgagcg cgtgaatagg gtaatcgtaa cggctatccg ctgctcgctc      5400
     aaccaggaga aagatcaccg caattgggat cataatgtcc atcaaattgc aaaagcaata      5460
     cgaacaagtg ttcatgaaag tacaggttac actccttact tcctgaactt cggtcgcaac      5520
     atggtcagta gtgggagtga gtacgagacc atgaaagaaa gtgaacctca gaaggatctc      5580
     gaacaaaaag aagacgaaat gaagcaactg catattcagg tgcagcataa cttactaaag      5640
     gcctaccaaa agtacagcca cccctacaat ctgcgagcca attaccgaca cgtattccaa      5700
     aagggcgatg tggtgtataa aagaatggtg catctctcgg ataaatcccg taactttgtt      5760
     ggaaaattcg caaataagta cgaaaaggta cgagtaagtg aagtgctagg taccaataca      5820
     tatgctttgg aacgactaga tgggcgaaag atagctggaa gctatcatgg ctcttttcta      5880
     aagcgtgcat agaacggcaa gctatgacgg ccaccacata ggtgtgcata aaccagcata      5940
     atcagataca aaacactcaa agaggtcatt ccctacgtcc aatgtttgag atgtcagctg      6000
     gtctgtttcc tcgcattgtc gactcagcgt acagaagtac cagctatgac ggtacatcat      6060
     catgatgtgc ataaactagt agatttcacc aaaaaaaaaa aaaaaaaaaa acactcccag      6120
     aggtatacac ttttaggtcc aatgttcgag atgtctgaac agtttcctca cattgaagac      6180
     ctaaataaac tccatcaaac aaacctaaaa tttagaatat tttaataatt tttgaatgca      6240
     ttaactgtgt tggtatgtga tgcatcagtt gcattcctgt ctgttaactg gtcgacaaac      6300
     attgaccttg actcacaatc tcactggtta tgcactttgt ttacttcaat agcccggttt      6360
     agaaacacag atttccgcaa ttcaaaagta gtttttcaat agttacctat ttccaaacag      6420
     tcactttacc ttttaactcc attcacatta aatttcatgc cagttaattc cattagtttc      6480
     cgtttttttc gaagaaaatc cgtaacacga tgcagcaacc ataccgttct gttttcgtta      6540
     cgtgtgtttt gtttagtttt gacgtttatg attaagcttt cggaagtgga aagctttcgc      6600
     gtgtacccgg tactgaaaac tcagtatttg tggatttggt atgcgtcggt tttgtttccg      6660
     tgtgtttagg ctatgtcatt tggatcagaa tgaaagagtc ggtatgagtt cggttattaa      6720
     tttaaggctt agattctagt tttgctatcg gttggaaaac catatgctca gatatttctg      6780
     aggttaattc ggttatgttc ggtttcggaa aataagtatt gctcagatat ttctgaggtt      6840
     aattcagaat aatttcatac tcagatattt ctgaggttga gtttcggtat atataggttt      6900
     gatagggaat ttgaatgatt gttaggtgaa tgagttgagt tcataatggc atagtttaaa      6960
     tagtktagtt atgtgttcaa gaattccaac ttaacaaawa gtaaaattaa ttaagtagtt      7020
     tgaatggtac ataagaaaca gaaaatattt taatctgtgt ctttgttgtg taatctagaa      7080
     gaaaaatttt gaaaattttt caaattttca aaatttttaa tattggtata ggcgaa          7136
//
ID   Gypsy-499_AA-LTR repbase;    DNA;    INV; 1759 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-499_;
KW   Gypsy-499_AA-I; Gypsy-499_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1759
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1759
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3105-3105 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1759 BP; 516 A; 350 C; 364 G; 525 T; 4 other;
     tgtaagaaat tgaattattc gtcaaattaa ataaattctc atgttttgtt tttttttctg        60
     ttaactgtgc ataaagtaag aaatwaattt ctctccgtgt accctacaac ataggatcca       120
     cgaagctttc attcaakttt tactagtgct gccacctcat tgtcaaaaaa agctcgattt       180
     agatacgtcg acatgatatg aaatcaaaag cccgcgcgtg ttatacaaat tgcatattga       240
     ttggcgaatt gacctaatca tgttaatttt ctttctgcac aatttccact cctgtggaaa       300
     attccatcct ttttcaaatt tccaatcagg aaaaggcttc ttaaaaattg tacagcttgc       360
     agacaaactg cgtcgtagct tttaggtcta aaccaatttg tatcgcgagc gtcgtttcat       420
     ttaaagtgga gtgctcgaat tgacaagtcg atattttgtc ggagtgattc tagaagaaaa       480
     ttcaaattgt taaggtgtat tagcttcaaa ctgaaatcga agtaatttcc gggaaagtac       540
     tttgttcagt gaatgtataa atttaaaaaa cattcaatta caggtttttt ataagttgtt       600
     tagtgaagaa ccgtgtgaca accacgtgtg ccttaatagt ggtttagttc aggtaagcca       660
     ttactatttc gaccttaagt gaagcaataa gtgaaattct aacgttgaat aggctttgcc       720
     catccaacgt gggcggttcg tccggagttg gtccatattt ttccaggacg aagttgaagc       780
     aagccagacc agagcggtca gtccacgtgg ttcgagttgg cagaccgaat tagactctgc       840
     ggtgccgtag cgatcaaccg ttggcgcgca gaaaagctag gcattgagcg gagacactgt       900
     agcatcggtg taaaagtgta caatccgaat cgggctagca atactgctcg awttaagatc       960
     cgtttagtca agtgggacga tatcgagcct cgtccacgtg ctcgtcactc cactagacag      1020
     ggacgcatct accctgagtt catcgtcgcc cacggatcgt gctagtgttt gctctatggt      1080
     aagtccaagg taatctcacc gccaacaatc aaaccacctc tcgaacatcg actggacttc      1140
     caagcttggc aacgaaacca ctgtaactaa tcgcccaagg acagcgtggg agccgcaacg      1200
     tttccggctt aaggtcagac tagtttattg cctaagaaga aagaaatact atttttagta      1260
     aaaggttcaa acataagcca atacagttag ccgtgacgtc acaaaataaa gagtagggtt      1320
     ttcttgaact gaatcgagtc gtagaataaa ctggttcctc ttatatgtga agcttataac      1380
     aaacctgatc agtcaaattt taaatgcgaa gcttgatgag aaataaatgt tacttcgaat      1440
     tcagttctcc ctccactagt tcgtgacgtc atwcaaagtt aaactttcgc aaattggttg      1500
     gtctagttag caaagacaca actcgactgc tcgactgtac gatttttctt tagttataca      1560
     atttttgtcg gatttactag tcattagtaa agtttgcttc attggttggg tcaatttgta      1620
     cacaattcgg tccgttatta actgttggcc tgctctgaga tagcggtctc atgccgggat      1680
     ctaaatccga gttaacggtc cttcaattag aaggtggcgc ataaaccgtt agctttaaga      1740
     tacagaaagg attgttaca                                                   1759
//
ID   Gypsy-49_AA-I repbase;    DNA;    INV; 6668 BP.
XX
AC   supercont1.288;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_AA_;
KW   Gypsy-49_AA-LTR; Gypsy-49_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6668
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.288; Positions  224321  217654.
XX
CC   Positions [4869-5345] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2789..4798
FT                 /product="Gypsy-49_AA-I_1p"
FT                 /translation="MLGTAKLKSIKIPSNRALKAYATNVPMKVDFAFRAEI
FT                 EPLESTNTVLADFLVVMEGRRSLLGRTTASDLELLFVRAQINSCEVVTDKQ
FT                 FPKMPGVTVKFSVDESVTPTRNAYYNIPAAYREGARRRLLEMEESGIIERV
FT                 TAAPEWISGMSAVPKGKNDFRLVVNMRAPNRAIKREYFRLPILDEMRVKLH
FT                 GAKYFTKLDLKSAFYHLELSPESRDLTTFLAENGMFRFTRLMFGVNCAPEI
FT                 FQREMTRILENVENKIVYIDDVLLFADNLDDLHEIVNQVLEILKENNLTLN
FT                 EDKCEFDKTQITFLGHELDEDGFHVEEAKIGAIRKFRRPSTSSELRSFLGL
FT                 ASFVSPYLKNFANISSPLWSLVGSKTWFWGEKQEDAFNEIKEQIIRCTVSL
FT                 GYFSEHEDTILYTDASPNALGAVLVQESAGRNPRIISFASKALTDTEKRYA
FT                 QNQREALAAVWAVEHFSYFLLGRHFTLRTDAKGITFIFNRSRESPKRALTR
FT                 ADGWALRLSPYSYTVEFVKGSDNVADPSSRLYQGVDQPFGEESSPWEIAHV
FT                 EANMARFLGEEEIREFTTNDEVLQMVVVVCHKFLNKLIFIFLKLIGYQSHR
FT                 LRRMVKTFEQISGSFGRLVRQRWHTNEIRMCRDPGKITPQNASGSTRGTSL
FT                 SSKTEEHSTRACLVAGNVCGC"
FT   CDS           4785..5789
FT                 /product="Gypsy-49_AA-I_2p"
FT                 /translation="MSADAENWVKSCKTCAVNGRPEKPPPMRRVFAPQTVW
FT                 DTIALDFNGPYARLGGISILVIIDYRSRYAIAKPVKSTCFESTRKVLDDVF
FT                 NREGFPLAIKSDNGPPFNSDDYKSYCQERGIQTIFSTPFFPQQNGLVENFM
FT                 KVVNRAMSTAISNSSNFNDELQAAVNAHNASAHTVTKMPPEEVLSGRKIRR
FT                 GLPLINPGKVDIDEQLLNQRDADAKLHSKAIADMRRGAKPCSVSSGDVVIL
FT                 ERQTKSKGDTRFDEKRYTVIKENNGSLLLSDDEGKLCRRHVSQTKKVHEWR
FT                 KLDSEDVVPAKQSRTTATSSRSVRQKRLPTHLSDYVRLTEQDH"
XX
SQ   Sequence 6668 BP; 2191 A; 1247 C; 1509 G; 1721 T; 0 other;
     ttggcgatcc tgccaggagt gtaaatgtta aggataatag caaatggaaa agaatcactc        60
     gaccgaagat tatttaagaa aaccctaaaa gtgattttgg tgtgcaacaa aaagtatcag       120
     ggagaggaaa acaaaatggc gttttttttt tcggagtacc accgtagtga atcagtaagg       180
     atggctgaat cgcacttgca aaaaaaaaaa aatggagacg agtaatgaag accgtgaata       240
     gaagaaagtt ttgtttgaaa gaatgataga cgtgtaagga aaaccgtctt cagatagtgc       300
     atagtgaaaa ccacaaatta aaaacttttc gtgaatggtg cataatgaaa accaccaatt       360
     aaaaatgttc ttgtgaatgg tgcgtaatga aaaccgccaa tcaaaaagtt ttcgtgaatg       420
     gtgcgtaatg aaaaccacca attaaaatgt tctggtgcgt aatgaaaacc accgattaaa       480
     aaagttttcg cgaatggtgc gtaatgaaaa ccaccaatta aaaaaaatcg tgaatggtgc       540
     gtaatgaaaa ccaccaatta aaaacttttc gtgaatggtg cgtaatgaaa accaccaatt       600
     aaaaactttt catgaatggt gcgtaatgaa aaccaccaat taaaaacttt tcgtgaatgg       660
     tgcgtaatga aaaccaccaa ttaaaaagtt tttcgtgaat ggtgcgtaat gaaaaccacc       720
     aattaagagg ttctcgtgaa tggtgcgtaa tgaaaaccac caattaaaaa cttttcgtga       780
     atggtgcgta atgaaaacca ccaattaaaa agtttttcgt gaatggtgcg taatgaaaac       840
     caccaataaa aaagttttcg tgaatggtgc gtaatgaaaa ccaccaatta aaaaattcgt       900
     aaatagtgcg taatgaaaac caccaattaa aacgttttca tgaatggtgc gtaatgaaaa       960
     ccaccaatta aaatgttctc atgaacggtg tgtagttaaa accaacaatt aaaatgttct      1020
     cgtgaatggg gtgtaatgaa aaccaccatg aatccactaa tttcaaagga tacgtaataa      1080
     aaaccgtaat gaatggattt attgaataat ttggatataa aaataattct gttaaatttt      1140
     gttaacagga ctgaaatcaa tgatagtaat atttaaaaga attagagaat ctacaaccgt      1200
     gagcgataat gccaaactct aattcaattt gttttcagtc attttacagt ttgcggacaa      1260
     tttataaacg tgaacaagtt caaaggtgtg aagagtgaaa atgtcgaacg aaggcaagta      1320
     cgttcgtatg taccgccata gcgacgatga ggaagaagct gaaaccagtg gtgcgggaag      1380
     gtatgttcgt gccccactag tgtccaacga agaatcagga cacgatgagc acgaatttga      1440
     cgattacgat atcgtggtag accataacaa gcagaacgaa atgtttaaac aacaactagc      1500
     gaagatgcag aaagctatcg aggaaataac ttcgatgaac atgcgatccc gggaacgtag      1560
     tggaagtaat gatgccgaag aaagttggac cttctctcgt aaccatccat cgtcacaagc      1620
     aaatgaatac gtgcctagca tccggtggga tcagatgaag ccattcccga agaatattcc      1680
     tgcgaacaag atgtgggaag agtgggcgaa gtatatcgaa aacttcgaaa tcgctactac      1740
     cttatcaaat gccaacgatc ctgtgcgccg ttctcaactt ctctttctat caatgggtga      1800
     agagttgcag ggcattgttc gcgcagctaa actgaggcca aatctgaatg acagcagttg      1860
     ctaccgaatc tttgtgaaga acgttgaaga acatcttcgc tccatgaccg atgcgaacgc      1920
     ggaacacgaa gaatttttcc gtatgcgaca ggaaagagga gaaactgttg tatcttttca      1980
     tgccaggctc atggaaaagg cgctcaattg tcgttatggc ccaagcgtcc tggaacgatt      2040
     tgttcatgcg cagttactca aaggtaagaa cgactgaagc taaaaaaaaa aagaaaaaat      2100
     tgcttattga tctatttagg tatgacgaac caagaactgg ctaaaatggc gaggacattc      2160
     ggccataaaa caagtgatat tgtgctagca gcaactcgcg acgaggcaca tcgaactgaa      2220
     tcaacgcagg cagttaatac agacgattca ttggtacacc aggtgcgtag accaccattc      2280
     agggctccgg gaaaacgcta tggcagttac agcaaaccgg atgatcctcg caacaaaaag      2340
     actcgtttcg acagtcgtcg tctcagtcag aaacaagaac gttgttcaag atgcaataag      2400
     tggatgcata agaaccgacc gtgtccagca ttgagactca aatgtcatga atgtggttca      2460
     tttggtcact tcgctgtggt ttgcaagaag aaacgcgtca atgccatcgt tgatcagact      2520
     cctcaggaag cgggattgga gcctaaggaa gaggaggtaa aatgaattaa ttctctacaa      2580
     tgaaattcgt gaaatataat cttgaactat agctaactaa gtttctatct tattttatcg      2640
     ttgatgacag ctcaatgcat tatctttcga agatgtactg atcaaatgtc gattgggctc      2700
     ctccagtccc gtacaatttc tcatcgactc cggggcagat gtcaacgtga taggtggaaa      2760
     tgattgggaa accctgcaga aggaatatat gttggggaca gctaaactga aatcaattaa      2820
     aataccatcg aacagagctc taaaagcata tgcaactaac gttccaatga aggttgattt      2880
     tgcttttaga gcagagattg aaccactgga atctacaaat accgttttgg ctgactttct      2940
     cgtggttatg gaaggtagaa gatctctcct tggaagaacg acggcaagcg atttggaact      3000
     gctatttgtg cgagcgcaaa tcaattcctg tgaagttgtg acagacaaac agttcccaaa      3060
     aatgccaggt gtcacagtta aatttagcgt agatgaaagc gttacaccga ctcgcaacgc      3120
     ctactacaat atccctgccg cataccgcga gggggctcgc cgtcggctgt tagaaatgga      3180
     ggaaagtggt attatcgaga gggtgacagc ggctcctgag tggataagtg gtatgtcggc      3240
     agtgccgaag ggaaagaacg atttcaggct cgtcgttaat atgagagcac caaacagagc      3300
     aatcaaacgc gagtactttc gtttgccaat actagacgaa atgagagtta aattacatgg      3360
     tgcgaaatat ttcactaaac tggatctgaa gagcgcattc tatcatctgg aattgagccc      3420
     agagtcccga gatctaacaa cgttcctggc tgagaacgga atgtttagat ttacgaggtt      3480
     aatgtttggc gtaaattgcg cgccggaaat tttccaaagg gaaatgacca gaatcctgga      3540
     gaatgtcgag aacaaaattg tgtatataga cgacgttcta ctattcgcag acaacttgga      3600
     tgatttgcac gaaatagtga atcaggtact cgaaatcctg aaggagaata atcttactct      3660
     gaatgaagac aaatgcgaat ttgataaaac acaaatcacg tttctcggac atgaactaga      3720
     tgaggatggc tttcatgttg aagaggcaaa gattggcgcg atacggaaat ttcggcgtcc      3780
     ttctacatcg tctgagctac ggagtttcct tggattagca tcgttcgtta gtccatactt      3840
     aaaaaatttt gccaacattt cgagcccctt gtggtctttg gttggatcaa aaacttggtt      3900
     ctggggcgaa aaacaagaag acgcgttcaa tgagataaag gagcaaataa ttcgctgcac      3960
     tgtatcattg ggctattttt cggaacatga ggacaccata ttatacacag atgcttcacc      4020
     aaacgcatta ggggctgtgc tggtgcaaga atcagctgga agaaaccctc gaatcatcag      4080
     ctttgcgtct aaggcgttaa cagatacgga aaaacgatat gctcagaacc agagagaagc      4140
     cctagctgct gtctgggcag tggagcactt ttcttatttc ttgttgggca gacatttcac      4200
     tctacggacg gatgcaaaag gaatcacttt tatcttcaac cgttcccgtg aatcaccgaa      4260
     aagagcccta accagagcgg atggctgggc tttaaggctt agtccgtaca gctacactgt      4320
     tgaatttgtc aagggaagtg acaatgtggc ggatccctct tctcggttat accaaggagt      4380
     tgaccaacct ttcggcgagg aatcgagtcc ctgggaaata gcacatgtag aagcaaacat      4440
     ggctagattc ttgggcgaag aagaaattcg agaattcaca accaacgacg aagttttaca      4500
     aatggtagtt gtggtttgcc ataagtttct caataaacta atttttatct ttttgaaatt      4560
     aataggttat caaagccata gactcaggag aatggtcaaa acatttgagc agatttcagg      4620
     cagtttcgga agacttgtcc gtcaaagatg gcatactaac gaaattagga tgtgccgtga      4680
     tcccggaaaa attacgccac aaaacgcttc aggtagcaca cgcgggacat cccttagcag      4740
     caaaactgaa gagcattcta cgagagcgtg tctggtggcc gggaatgtct gcggatgctg      4800
     aaaattgggt caaatcatgc aaaacatgtg ccgtgaatgg aaggccagag aaacccccac      4860
     ccatgcgtcg tgtgtttgct ccacagactg tttgggatac gatagcactg gacttcaatg      4920
     gtccgtacgc gaggcttgga gggatctcca tcctagtgat aatagactac aggtcaaggt      4980
     atgcaattgc taaaccggta aaatcaacct gctttgaaag tacgcggaaa gttttggatg      5040
     atgtgttcaa tagagaagga ttcccattgg ccataaagtc tgacaatggt ccaccattca      5100
     acagcgacga ctacaaatcg tattgtcagg aaagaggtat tcaaaccatt ttctctacac      5160
     catttttccc ccagcaaaat ggcctggtgg aaaatttcat gaaagtggtg aatagagcta      5220
     tgtcaacagc gatatcaaat tccagcaact tcaatgatga attgcaggca gcggtaaacg      5280
     ctcacaacgc ttcagcccac actgtcacaa agatgcctcc agaagaagtt ttgagtggca      5340
     gaaaaatccg ccgaggtcta cctttgataa atcccggtaa agtcgatatt gatgagcagc      5400
     tactgaacca gagagatgct gatgcaaaac tgcactctaa agctattgct gatatgcgac      5460
     ggggagcaaa accttgcagt gtcagctctg gtgatgttgt catactagaa aggcaaacaa      5520
     agtccaaggg cgatacaagg ttcgatgaaa aacgttacac agttatcaaa gagaacaacg      5580
     gcagtttgct attaagtgat gacgaaggta agttatgtcg tcgtcatgtc tcacagacta      5640
     aaaaggtaca tgagtggcga aaactcgact ccgaagatgt agtaccagca aagcagagtc      5700
     gaacaacagc tacgtcttct agatccgtaa gacagaaaag acttcctact catctatcgg      5760
     actatgtcag gctcacagaa caggatcatt agaactaaag tgctaagttc ataacacctg      5820
     taaataaaac tacctgtttg aatctatctg catactcact gttttttttt ttgtgaagat      5880
     cagggaagcg cactgaagca acctccactc attagcctgt ttttccttag cgcacaagaa      5940
     aggaccatat ttttgttgct cctatgatgg taacgtctta ttcaggtggc acatgaaaag      6000
     ggtttttttt tgtttttcgc gtgcagggaa attttatcgg ataaaatttc agaatcgcgg      6060
     aaaagctcca aaattttggt ggttttgttt tggttttgtt atacttgcct ttgacagttg      6120
     taactgggtt tgctgaatat gcgtaaattc attgacgtcg aaaaaggagg gggtctgctg      6180
     aaaagaaaac cacacggaaa cgcgtattta ctcaaacctg aggtgcatat acgcaaaacc      6240
     gtaattagga atattaaccc gaaatctaat gtccactgaa ttaggttcat tcaactcaaa      6300
     catgagaata ttatatatgc attcacttgg cttatttggg tcaattttgg tagatgcatt      6360
     ttctctctct atttttgaca acattcgtgg ggaagtagga gagaattccg agagtttgaa      6420
     aaataatcgt tatacttaca ttttaggtaa gatagaaaaa tatctttgtt tctgtttaat      6480
     acattgatgt ggaaaccaaa ttcatgattg aacattaagt ttaccaatat tttgaatgga      6540
     gtgcgctcac tgagtgatta aattattttc ttgctagtat gtgagctatt catttcgcac      6600
     gaaaacgtga agcgagacgg agcatagaca atcggaagca gaattttttt tatagagaag      6660
     aaggagga                                                               6668
//
ID   Gypsy-49_AA-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   supercont1.288;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_AA_;
KW   Gypsy-49_AA-I; Gypsy-49_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-288
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.288; Positions  217653  217366.
XX
SQ   Sequence 288 BP; 67 A; 53 C; 76 G; 92 T; 0 other;
     tgtgaggtgt atactggact tatcctttca gtttcctttc acactactga tgacggttga        60
     atgatgattc gtttgataga tttatgtgtt ggtaccactg ttcgagccac acaacggcga       120
     atgttgaata cggcaacgtt ggcgcttcat caagcatcat tgtgtagtga acgctcgtgg       180
     aggtaagtcg tgctcggggt acaagtgcat ctcgggcgag tgattcttca tcatgggaat       240
     tacaaatggc tgccttgagg gtaagtcctg tattattggt aatttaca                    288
//
ID   Gypsy-49_AnFu-I repbase;    DNA;    INV; 5301 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5301
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2933-2933 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           962..1996
FT                 /product="Gypsy-49_AnFu-I_1p"
FT                 /translation="MIFSLCTALQMNQDKQFIVPLGPFNDKVDSHDLRREW
FT                 EEWHRAFELILQMGKKKSQSRKLVSMLAMGGRGLQRIYYNLRPVPGEVVPK
FT                 PIKVPMMPTEIPECDNAVKRLQHFFMGKRNERVDLEVFRSLRQLPEESFNT
FT                 FMLRLRAQAARCEFSEREEKELLQQITIGAREEKVRDKALENIMNLDEIII
FT                 YAMNREILLQQREKHKPFSAGTEVNSINPSRSRNRNFSSSRGIERYQRYGG
FT                 TRPDNLGNGRYYGASVHGCKRCGSSRHFEDSRDCVARNARCNNCGGHGHYA
FT                 RKCDNRVKQTNRFFGRDRNRXYGREFSRGLKSNTNTVDVAVTSEEKDHIAK
FT                 VE"
FT   CDS           2112..5216
FT                 /product="Gypsy-49_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VEAINYNNDSVLCMIDDVPVEFIIDSGSSINAVTEEV
FT                 WHKLISHKAKIFKRKYQCDRKFYAYANSEPLMVTAIFEALISVNPTKPTNY
FT                 AEFFVIKGAGKCLLSKRTSEDLKLLRIGLDVLQVNPALGKETKPFPKFPGV
FT                 QVKLSIDPNIPPKKIAYLRIPAAMEQKVDNKIKEMLQSDVIEKVEGPADWI
FT                 SPMVVVPKGKDDIRICINMKHPNEAIQREHYPLPIIDTFLNKLKHSKFYSR
FT                 LDITSAYHHVELHPDSRGVTTFMTNMGLMRFKRLMFGINCAPEIFQRIMTD
FT                 MLSGIDGVIVYIDDIVVSGSNREEHDKRLQQVLRVLEENNAMLNRSKCVFG
FT                 VEKLEILGFEVSAQGISPSEEKVAAIKNFRPPSSKEEVRSFLGLLNFVGHF
FT                 IPNLSTRTEPLRKFIRGEVEMFDREQMDAFDDLRLELSNNVRELGFYDPLD
FT                 ATAVYVDASPVGLGAVLTQTDRHTNKPRIICFASKGLTAAERVYPQTQREA
FT                 LAVVWAVEKLYLYLFGTRFTIFTDHKTLEYIYGGKHQNGRRACSRAEGWAL
FT                 RLQPYDFEIKYIPGATNIADILSRLVSEPGKQFDETSDHFLFSLHEGFSAI
FT                 TLDEIRQETTEDEILLAVMSALDTKHWPPELFRYQAFEKELTVIDGIVVRD
FT                 DRVVLPAKLRTRALKIAHRGHPGIVAMRRNIREKMWWPCMDRDVTNAVQEC
FT                 AGCAAVSKEYPPEPMIRKEMPERAWQEIAIDFFSAKECSTFLVIVDYYSRF
FT                 LKVIEMKNTNAAKTIEALESVFHEQTYPETIRSDNGPPFTSEEFSQYCKTK
FT                 NIRLVRTIPYWPQMNGLVERQNQGVLRALRIAKATGSDWRKAVEDYVYMYN
FT                 TTPHSVTEKAPLELMTGRPVKDLLPSLRTDPHWRRDEEVREKDAIKKMQGK
FT                 LYTDNRRQAKHADINVGDTVMLRNFETGKLEPKFRLEKFKVLKKIGSDTIV
FT                 ANEEGITYRRSVTHLRKFPLPSADCAASAHSGSIPRDNSENDPVSKEQKLQ
FT                 ENKRKREVDQDQVLAKRPIREKRVPLKFL"
XX
SQ   Sequence 5301 BP; 1628 A; 1028 C; 1318 G; 1320 T; 7 other;
     attttggcgc agccggtagg atccgcgaaa tggtgagtgt gtgcgcctga tcccattgta        60
     aatttctttg gaataaatgk ggagctaatg ttgagataag tgaacataga atgaagacga       120
     aatccagtgg gtttctaatt ttagaactca agtgcgwaga ggcttmaatt ttggcgggaa       180
     tgcaggcgtg cataaattag ctgtgttggg cataagattc attgtggaat aaattgaaac       240
     gaagcatttg aacggtgtat gaattaacgg tgtgaaggta aaaccgagcc tagagggaaa       300
     tttacaatgt tagtgtgctg aagcgagtcc agagaaatct gcagcgctag tgtgtaaaag       360
     cgagcccggt acaaccgtag cgctgttctt agaagcgagt ccagaaagaa atcgcagcgc       420
     tagtgtgtga aagcgagccc ggtacaaccg tagcgctgtc ttagaagcga gtccagaaaa       480
     atctgcagcg ctagtgtgtg aaagcgagcc cggtacaacc gagcgctgtt cttagaagcg       540
     agtccagaga aatctgcagc gctagtgtgt gaaagcgagt ccggtacaac cgtagcgctg       600
     ttctttagaa acgagttaaa aaaaaaaaaa aaaaactgca gcactcgtgt gtgaaagatg       660
     aatgtatatg ttagaattgg tcggggaaat tcgaagaata atctattgaa gctaacccgc       720
     agcaagtcgt actgatgatt ttccagtttg aagtttgtcg gaagtgtgaa gccaacacgt       780
     aamgctaaac gcggcacgct atttttgatt acggaaaaac acaatttcga gacacactgg       840
     ccttatataa aagaaaaagg aaatcacacg cttatttcag ttcaatattg tgttattaaa       900
     agagaggtta ctgtaggtta ctgtaaacca aaatatcgaa tawgacaaat gacaaatagt       960
     aatgattttt tccctctgta ctgcactcca gatgaaccag gacaagcaat ttattgttcc      1020
     attgggaccc tttaacgata aagtggattc tcacgactta cgtcgcgaat gggaggaatg      1080
     gcatcgggcc tttgagctga tcctacaaat ggggaaaaag aaatcccaaa gtcgtaagct      1140
     ggttagcatg ctagcaatgg gaggtcgtgg attgcaacgc atatactata atttgcgtcc      1200
     agtacctgga gaagtkgttc ctaagccaat taaagtgcct atgatgccga ctgaaatacc      1260
     ggaatgcgat aacgcagtta agcgcctaca acattttttc atgggaaagc ggaatgagcg      1320
     agtggatttg gaagtttttc gatcccttag gcagttaccg gaggaatcat ttaacacttt      1380
     tatgctgcga cttcgagctc aagcggcgag atgcgagttt tccgagcggg aggagaaaga      1440
     attactacaa caaatcacga tcggggcacg cgaggaaaaa gtgcgggaca aagccttaga      1500
     gaacatcatg aatctagatg aaattattat ttacgcaatg aaccgtgaga ttctcctaca      1560
     acaacgggaa aaacataaac ccttttcagc tgggacggaa gtgaatagca ttaatcccag      1620
     tcgctcaagg aatcggaact tcagctcgag tcgtggcatt gaacgctatc agcgttatgg      1680
     aggaacgcga ccggataatt tgggtaatgg gcgttactac ggtgcatcgg tacacgggtg      1740
     caagcggtgc ggttcttctc ggcacttcga ggattcgcga gattgtgttg ctagaaatgc      1800
     acgatgtaat aattgtggag gacatggaca ctatgccaga aaatgcgaca atcgagtgaa      1860
     acaaactaat cgattctttg gacgcgatcg caaccgtgaw tatggacgcg agttcagtcg      1920
     cggattgaaa agtaacacta atacagtaga tgtggcagtg accagcgaag agaaggatca      1980
     tattgctaag gtggagtaat tgcattggat ttttctgttg gttactcggt ttactattat      2040
     ctgatgttat agagctgaaa tgaattgaaa tgaatttgga ataaataact ttttttcccc      2100
     ctttgcatta ggtggaagca attaattata acaatgactc cgtactatgt atgatagatg      2160
     atgtgcccgt ggaatttatc attgactcgg gttcttcgat taacgctgtt acggaagaag      2220
     tatggcataa attgatctcc cataaggcga aaatatttaa aaggaagtac caatgcgatc      2280
     gtaagtttta tgcttatgca aatagtgagc cgttgatggt gacagcgata ttcgaagcgt      2340
     tgatatcggt caatccgaca aaaccaacta actacgcaga gttctttgtg atcaagggag      2400
     cggggaaatg tcttctcagc aaacggacat cggaagatct aaaattgcta agaattggcc      2460
     ttgatgtact tcaggttaac ccagctttag gcaaagagac taaaccattc ccaaaattcc      2520
     cgggagttca agtgaagcta tctatcgacc ctaacatacc gccaaagaag atcgcttatt      2580
     tgaggatccc tgctgcaatg gaacagaagg tggacaataa gataaaagaa atgcttcaga      2640
     gtgacgtcat agagaaggtc gaaggcccag ctgactggat atcacccatg gtggtagttc      2700
     ccaaaggaaa ggacgatatc cggatatgta taaatatgaa gcacccaaac gaagccattc      2760
     agagagaaca ttatcctttg cccattatcg acacgttctt gaataaactt aaacactcca      2820
     agttttattc ccggctggat ataacgtcgg cgtaccacca tgttgagctt caccctgact      2880
     cgcgaggtgt cacaaccttc atgacaaaca tggggctaat gcgctttaag cgcttaatgt      2940
     tcggtataaa ctgtgcgccg gaaatcttcc aaaggattat gacggacatg ttaagtggca      3000
     ttgacggggt gatcgtatat atcgatgata tcgtcgtctc aggcagcaac agggaggaac      3060
     acgataaacg gttacagcaa gtcttgaggg tactagaaga aaataatgcg atgctaaacc      3120
     ggagtaaatg cgttttcgga gtcgagaagt tagaaatact ggggtttgaa gtaagcgccc      3180
     agggcatcag cccatccgaa gagaaagtag cggcaattaa gaattttcga ccaccgtcat      3240
     ctaaggaaga agtgcgcagc tttttgggcc tcctcaactt cgttggtcat tttatcccga      3300
     atctctccac aagaacggaa ccgttaagaa aatttatacg aggagaagta gagatgttcg      3360
     acagggaaca aatggatgct tttgatgatt tgcgactgga gttgtccaat aatgttcgag      3420
     aattagggtt ttatgatccg cttgatgcta ctgcggtata tgtcgatgcc tcacctgttg      3480
     gactcggggc agtacttact caaacagatc gacacacaaa caaacccaga ataatttgct      3540
     ttgcttcaaa aggcttgacc gctgctgaaa gagtgtatcc gcaaacacaa cgggaggcgc      3600
     tcgcagttgt atgggcggta gagaagcttt acttgtatct tttcgggacc cgattcacga      3660
     tcttcaccga ccataaaact ctggaatata tatacggcgg aaaacaccag aacggacgac      3720
     gagcctgttc cagggcagaa ggttgggcac tccgcctgca accgtacgac tttgaaatta      3780
     aatatatacc tggagcgacg aatatcgcgg atatcttatc tcgtctggta tctgaacccg      3840
     ggaagcaatt cgatgaaact tcggaccatt ttctgttttc tttgcacgaa ggattttccg      3900
     ctattacctt ggatgaaata cggcaagaaa ccactgaaga cgaaatactt ttggcagtta      3960
     tgtcggcttt agacaccaag cattggcctc cggaactttt tagataccaa gcgttcgaaa      4020
     aggagctaac tgtcatagac ggtattgtgg tgagagatga tcgtgtagta ctcccagcaa      4080
     aattacgcac gagagcattg aaaatagcac atcgtggaca tcctgggatt gtagcgatgc      4140
     gaagaaacat acgtgaaaaa atgtggtggc cgtgtatgga tcgggatgtg acaaatgctg      4200
     ttcaggaatg tgctggttgt gcggccgtaa gtaaggagta tccaccggaa ccaatgatac      4260
     gcaaggaaat gccggaacgc gcgtggcaag agatcgccat tgattttttt tcagcgaaag      4320
     aatgttctac gtttttagtc atcgtcgatt actacagtcg attcttgaag gtgatagaga      4380
     tgaagaatac taacgcggct aaaacaattg aagcactcga atctgtgttt cacgagcaaa      4440
     cttaccctga gactatccgc agtgataatg ggccaccgtt cacgagcgaa gagttttcgc      4500
     aatattgcaa aactaaaaat atcagattag tgcgtaccat accttattgg ccgcaaatga      4560
     acggattagt tgagagacaa aatcaagggg ttcttcgagc actgcgtatt gccaaggcaa      4620
     ccggcagcga ctggcggaag gcggtggaag attatgtgta tatgtataac acaacaccgc      4680
     actcagtaac tgaaaaagct ccgttggaac taatgaccgg ccgcccagtt aaggatctcc      4740
     taccttcact aagaacggat ccacattggc gcagagatga ggaagtacga gagaaagatg      4800
     ccataaagaa gatgcaaggt aaactctaca cggataatcg cagacaggcc aaacatgctg      4860
     atatcaatgt cggtgatacc gttatgctgc gaaactttga aacgggtaag ctggaaccaa      4920
     agtttcgtct cgagaagttt aaggtgctga agaaaattgg aagtgacact atcgtggcta      4980
     atgaagaagg tatcacgtat cgtcgatcgg tgacgcacct gcggaaattc ccattaccgt      5040
     ctgcagattg cgctgcatca gcccactcgg gatcaatacc acgagataac tccgaaaatg      5100
     accctgtatc gaaagaacaa aaactgcagg aaaacaaacg gaagcgggag gttgaccaag      5160
     atcaggtctt ggccaagcgg ccaattaggg aaaagagagt tccactgaag tttttgtagt      5220
     gatcggaagt ttttttttct cttctcaatt tctatacttt ttttttttct tcttgttgtt      5280
     ttattcggag aaggagagag a                                                5301
//
ID   Gypsy-49_AnFu-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-178
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2861-2861 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 178 BP; 58 A; 24 C; 51 G; 45 T; 0 other;
     tgtagagttt aagcattaaa atatttgaaa atcggatagg tggctacctt gcttaaacga        60
     accttgggtt gagagcacga gttggaaggg gcatttatta gtgggggcag ttgggtgtca       120
     gcgatcaaat agaacggttg aaactgaacg gaaataaaga gctactgtga actcaaca         178
//
ID   Gypsy-49_CQ-I repbase;    DNA;    INV; 6971 BP.
XX
AC   AAWU01035675;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_CQ_;
KW   Gypsy-49_CQ-LTR; Gypsy-49_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6971
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 477-477 (2011).
XX
DR   Genome; AAWU01035675; Positions   33500   40470.
XX
CC   Positions [3388-3891] - Reverse transcriptase
CC   Positions [4942-5256] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           291..1892
FT                 /product="Gypsy-49_CQ-I_2p"
FT                 /translation="MVRFYILPNPEYLEEEEVDFELTMKREYDADQNLSEK
FT                 RRLLRAIFKDERSNPAPVYFEFNILKEIDILIPQIGDADKRLRTKFEYRDV
FT                 SRLRHFLRRLTAATANNDSEIIKRTEMCKLVENILRGHKQRVTYDPTELVS
FT                 ETDKESKHDEEAANKSWRNPDKSALVQKYKTPQKGLDEVETESGEDSKHNY
FT                 EKGKPKLFGTGKDKTNSTGTGTKPKKPLVSKDDLAELLKQYLDLNSTQGRN
FT                 KGNSYKKESGGLGEFQDSESGVVGKNEMYKNNQGEKGTRNRSRFCWSSEDS
FT                 LPDRRDRHGGKNRNHSIDSLPDRRDRHGGKNRNHSIDSSPDRRERHGGTNR
FT                 NRSIDSSPDRRDRHVGKYRNRSKDASPARRGRHNHRHRDQNSFEESSTDRQ
FT                 RRHRERNRNRNLRRNRSSPNSSDSGEGYPESGHRRRQYSRERYPRGGNRHS
FT                 RVEHWDISFSGDVKSLQVEDFLTRIRKLARHEQVGQHELLNKIHYKLKGEA
FT                 NDWWFTREHRHGTDLRGKLGSVLEIRIGSEEYVRNLRI"
FT   CDS           2887..5781
FT                 /product="Gypsy-49_CQ-I_1p"
FT                 /translation="MDFWNAFQIRPMIQGEGRMTDIDLLDVNGEPIGNLTT
FT                 EELLVDQYINRENEINLTVCALELTEQEQFFHRAQPEEDESLDVPSLELPN
FT                 NPEEAIENIETEHELTSPEREKLTETLKHFQWTSESKLGRTTLIEHEIEIM
FT                 EGAKMRDLPMYKYSPSMWEKIEKELERYEQLDVIEECTSESASPLVPVKKS
FT                 NGKLRVCLDSRRINSITKKDAYPMRNMNEIFHRLQKAKYFSIIDLKDAYFQ
FT                 IPLKESSRNLTAFRTPKGLFRFKVVPFGLKNAPFTMSRLMNKAIGFDLEPY
FT                 VFIYLDDVVVATESLEEHFRLLREVAERLKKANLTISVEKSRFCRNQVRYL
FT                 GYLLTENGLAIDSSKLEPILNYSRPKCIRDVRRLMGLMGFYQKFIKNYSHV
FT                 TAPITDLLKKEKKFKWTEAAESALEELKSVLTSSPVLANPIYNRPFIIETD
FT                 ASELAVGAALLQDFPDGRRIIAYYSKKLSSTQRKYAATEKECLAVVLAVEN
FT                 FRHYVEGTTFAVITDAKSITWLFSISATNGNSRLLRWALKLQSYDFSIQYR
FT                 KGKDNILADCLSRIETLQTVDNDYAELRDRIRKNSNKFSDFKVAGNKIFKY
FT                 VHDSNTVQDKRFLWKYYPQMSERSDLIRVAHEPGHLGYEKTIAKLRERYFW
FT                 PKMAQETKVYCKSCLPCKTSKSTNINTTPPMGSQKQNCDYPWQFITFDYLG
FT                 PFPPSGKARSTCLLVVTDVFTKFVLIQPFRRATASTLVHFLEQSIFLLFGV
FT                 PEIILSDNGSQFTSKMFADLLKHYGINHWLTPSYHPQVNNSERANRVITTA
FT                 IRATIKSNHKTWADNIANAIRNATHDSTKYTPYFLTFGRNMISDGREYDMI
FT                 RETNAQSQEMEINDEERKKLYEQVRMNLKNAYTKQAKYYNLRSNVKAPKYQ
FT                 VGEKVLKKSTFLSDKGKDFCAKLAPKYTEAIVSKVLGDSYQLEDLSGKSIG
FT                 IFHASFLKKY"
XX
SQ   Sequence 6971 BP; 2354 A; 1232 C; 1472 G; 1913 T; 0 other;
     ttggcgccca acgcaaaatt gataaatatc attttcgaga ttgccttgtc taaattgttt        60
     tttttttccc tctgatactt tacaaggaag ggagaatata ttttcgaata ttgcgtttgc       120
     atcctccatc tattattatt attttttttt taatattttc gatatttttt tttattgaac       180
     tcagcgtttt gtatatatat atttttttcc atattctaaa ttggttgtag tttaatattg       240
     aattggagtt tcttaacttt cgtttagatt tttaaattta aagtgtcaaa atggttcgat       300
     tttacatttt accgaatcct gaatatttgg aagaggagga ggtggatttc gagttgacga       360
     tgaaaaggga atatgatgct gatcaaaatt tgagtgagaa aagaagactt ctcagggcaa       420
     ttttcaagga tgaaagaagt aatccagctc cggtttattt tgagttcaat attttaaagg       480
     agatcgatat tctaattcca caaattggag atgctgataa aagattaagg acaaaatttg       540
     agtacagaga cgtgtcacgt ttgcgacact ttctgagaag gctgacagca gcaacggcta       600
     ataatgatag cgaaattata aaacgtacgg aaatgtgcaa attagtggag aacatcttaa       660
     ggggacataa acaaagagta acatatgacc caactgaatt agtatctgag accgacaaag       720
     aaagcaaaca tgatgaggaa gcagcaaaca aatcatggag aaaccctgat aagtctgcgc       780
     tagttcaaaa gtacaagacc cctcagaaag ggctcgatga agtcgagacc gagtcgggag       840
     aggatagtaa acataattat gagaaaggaa aaccgaaact ttttggaaca gggaaggaca       900
     aaactaactc aacaggaacc gggaccaaac caaaaaaacc tctggtttcg aaagatgatt       960
     tagcagagtt actaaaacaa tatctggatc taaactctac tcaaggtaga aataaaggaa      1020
     acagttataa gaaggaatct ggaggtcttg gggaatttca ggatagtgag tcaggagttg      1080
     ttggaaaaaa tgaaatgtat aaaaataacc agggggaaaa aggtacacgg aatcgctcca      1140
     gattttgttg gtcttcggag gactctttac cagatcgacg ggataggcac ggaggtaaaa      1200
     accgaaacca ctcgatagac tctttaccag atcgacggga taggcacgga ggtaaaaacc      1260
     gaaaccactc gatagattcg tcgccagatc gacgggaacg gcacggaggt acaaaccgaa      1320
     accgctcgat agattcgtcg ccagatcgac gcgataggca cgtaggcaaa taccgaaacc      1380
     gctcgaaaga tgcttcacca gctcgacggg gtcggcataa ccataggcac agagaccaaa      1440
     attcatttga ggaatcttca accgatcgac agaggcgaca cagggagaga aatagaaata      1500
     gaaacctcag acggaacaga tcttcaccga acagtagtga ttcaggggag ggatatccag      1560
     agtcaggaca tcgaagacgt cagtatagca gagagcggta cccaagagga ggaaaccgac      1620
     actccagggt tgagcactgg gacatcagct tcagtggaga tgtcaaatcg ctccaagttg      1680
     aagatttttt aacaagaatt cgaaaattag ctagacatga acaggtagga cagcacgaac      1740
     tattgaataa aattcattac aaactgaaag gggaagctaa tgattggtgg ttcacccgag      1800
     agcatagaca tgggacagat ttgagaggga aattaggttc cgttttggaa atccgaatag      1860
     ggagcgagga atacgtgcgc aacttaagga tctagagcaa aagaggggtg aaaaatttgt      1920
     tgcttatgtc aacgaggtag aaagattaaa tcagtgtctt aaacacccac tttctgaacg      1980
     ggaaattttt gagttggtat gggataaaat gcgaccccat tacaggtcca aacttgtaac      2040
     tgtaacggtg aacaacctag atgagttatt agcggttaac cgcagaatcg acgcaactga      2100
     cccaacgttg tacaggtcgg gaggacactc aagaaatgaa attcagcatg taagaggtca      2160
     ggatggtttt gaagacgagt actcgtcaga agaagaagct tcagtaaacg cagttcagcg      2220
     gaagttcaaa gatgatagga aaccctcaaa accaaacgga caatcggtta agtcgcgaag      2280
     tgcacaggta actgaagatc cagagatttt gtgctggaat tgtcgaaaaa tgggtcatca      2340
     ttggagaaca tgcagggaaa ctaaactagt gttttgttac gcgtgtggaa atattggacg      2400
     taccactcga acgtgtgaaa tgaaccaccc tattcaacag gtgcaagcac gcacccagaa      2460
     tagctcaggt aatcatcagc aatcgttaaa ctagaggcgg aatgttcttc ggggaaccca      2520
     ctcattccgc ttaagaaaga ggttcctcca aacccgaata tagaagagac acaatttcaa      2580
     aaatttaagc aggttttgac tatcagagtt gatccaaatt taagtccaaa aattaaggtt      2640
     tccatttttg atagcgatat tatcgctttg ttggattcgg gagctaatat aagtgtccta      2700
     aattcaacta aatttttacg aaaacatggt cttaaactgt ttaaagcaag tgtttcaatt      2760
     tgcacagcag acaacacgga acacgaatgc ttaggatacg ccaacatccc ctatacattt      2820
     gcgggggtga ctagggtaat tccaactatt attgtgccac aactttctaa gccactgatt      2880
     ctaggaatgg atttttggaa cgcttttcag attcgcccaa tgatccaagg agagggtaga      2940
     atgaccgata ttgacctttt agatgttaat ggtgaaccaa ttgggaattt aacgacggaa      3000
     gaattgttgg tagatcaata tatcaacagg gaaaatgaga ttaatttaac tgtttgtgca      3060
     ctagaattga ctgaacaaga acaatttttc catcgtgctc aaccagaaga agatgagtca      3120
     ctcgacgtgc cttccctgga acttccaaac aatccggaag aggccattga aaatatagaa      3180
     actgaacacg aactaacttc tccagaaaga gaaaagttaa cggaaacttt aaaacatttt      3240
     cagtggacta gcgaatctaa acttggtaga accactctaa ttgaacacga aatcgaaata      3300
     atggaagggg caaaaatgag agatttacct atgtacaaat attcaccaag catgtgggag      3360
     aaaattgaaa aagaattaga aagatacgaa caattagacg ttattgagga atgcaccagt      3420
     gaatcagcta gtcctttagt accagtaaag aaatccaacg gtaaactacg cgtttgtctt      3480
     gattcaagaa gaataaattc cattactaaa aaagatgcat atcctatgcg aaacatgaat      3540
     gaaattttcc acagactgca gaaggccaaa tattttagca taatcgattt aaaagatgca      3600
     tattttcaaa tccccttaaa ggaatcttca agaaatttga cagcttttag aaccccaaag      3660
     ggcctatttc gatttaaagt agtccccttc ggtctcaaaa atgctccatt cactatgagt      3720
     aggttaatga ataaagcaat tgggttcgat ttagagccgt acgtgttcat ctacctagat      3780
     gacgtggtgg tggcaactga atcgttagaa gaacatttta ggctcttgag agaggtcgcc      3840
     gaaagattga agaaagctaa tttaacaatc tcagtcgaga agagtagatt ttgtcgaaat      3900
     caagttagat atttagggta tttattgaca gaaaatggct tagccattga cagcagcaaa      3960
     ctagaaccga ttctcaacta ctctcgtcca aagtgcatca gagatgtaag aagattgatg      4020
     ggtttaatgg gtttttacca aaaatttatc aaaaactaca gtcacgtgac agcacctatt      4080
     actgatcttc taaaaaagga aaaaaagttc aagtggacag aagcagcaga aagtgcacta      4140
     gaagaactta agtcggtcct aacttcgtcg cccgtactcg cgaacccgat ttacaatcgt      4200
     ccattcataa ttgaaaccga tgcatccgaa ctcgcagtcg gcgcagcatt gttacaagat      4260
     tttccagatg ggagaagaat aattgcgtat tatagtaaaa aactttcaag tacccaacgt      4320
     aaatacgcgg ccacagaaaa agagtgtcta gcggtagtcc tagcagtaga gaatttcaga      4380
     cattatgttg agggaacaac gtttgctgta attaccgacg cgaaaagcat tacatggtta      4440
     ttttcaatct ccgccacgaa cggaaattcg cgattactgc gctgggcact gaaacttcag      4500
     tcctacgatt tctcaattca atatagaaaa ggaaaagata acatattagc ggattgttta      4560
     tctagaatag aaacacttca aacggtagac aacgactacg ccgagttgcg cgacaggatt      4620
     agaaaaaata gcaacaaatt ttccgacttt aaggtggcag gcaataaaat tttcaaatac      4680
     gtccacgatt cgaacaccgt tcaggataaa cgttttctct ggaagtacta tcctcagatg      4740
     agcgaaagaa gtgatttgat tagggtagcc cacgaaccag gtcacttagg atacgaaaaa      4800
     accatcgcga agctaagaga acgttatttt tggcccaaaa tggctcagga aaccaaagtt      4860
     tactgcaaat cctgtttacc gtgtaaaacg tccaaaagta ccaacataaa taccacccca      4920
     ccgatgggtt ctcaaaaaca gaattgtgat tatccatggc aatttattac atttgactac      4980
     ttaggcccgt ttccaccttc gggcaaagct aggagcactt gccttttagt agtaacagat      5040
     gtttttacaa aatttgtact aatacaacca tttaggagag cgacggcgag tacgctagtt      5100
     cattttctag aacaatcaat ttttctatta tttggcgtac cggaaataat tctatctgac      5160
     aacggaagtc agttcacttc taaaatgttt gcagacttgt taaaacacta tggaatcaac      5220
     cattggctca ccccgtcata ccacccccaa gttaataact cagagagggc aaacagggtg      5280
     atcaccacag cgattagggc aacgatcaaa tcgaatcata aaacatgggc ggataacata      5340
     gcaaacgcga ttaggaatgc aactcacgat tcaactaaat atacacctta ctttctcacg      5400
     tttggccgaa atatgatttc tgacggtcga gaatacgaca tgataaggga aactaacgct      5460
     cagagtcaag aaatggaaat aaacgacgaa gaaagaaaga aattgtatga acaagtaaga      5520
     atgaacctca aaaacgcgta cacaaaacaa gcaaaatatt acaatttacg ttccaacgta      5580
     aaagcaccga aatatcaagt aggtgaaaag gtcctcaaga aaagtacatt cttgtctgat      5640
     aaggggaaag acttttgcgc gaagctcgca cccaagtaca cggaagcgat tgtcagcaaa      5700
     gtgttagggg atagctacca attagaggat ttatcaggga aatcgatcgg tattttccat      5760
     gcctcgtttc tcaaaaagta ctaaccttag ggtggaccag ctatgacatc ttcttttaga      5820
     attttacaac ggctttgcct aaaaaaaaac gtctaggtac caccctagta acggtaaaca      5880
     taacaacgtt gatgtgcatg cattgacaaa cactttattc tgtaattaaa caacataaac      5940
     ataactcact gtattttttt ccattgtaaa tattttctat tctgattttt cgtgcgttgt      6000
     cacttttaat tgattatttt gtagattgta atttgtagca taagtatgta ggctccattc      6060
     ttgtttacag cagcataaat tcccattgtt gttggccagt tgagtcgtag caacgtagat      6120
     gattttcttt tgcggttctc tgatattttt tttgttaatt tttcctagaa ataagtagaa      6180
     aacggttaga atactgaatt ttgtgtagaa ttaccaaata ctctccagat ttaggccact      6240
     agtttgcagt ttttccgttt tccgagattt ttcacgtgaa ttcataaatt ccttcccacg      6300
     tttgttttgt ttcgaaatct gtcagcgacg ctgtcaaagc tttgcagggt tgcttttaat      6360
     gctgtcagtt gaatgttgca gtatggtgtt gcgcgactgt cgcacaagtt ttaatttata      6420
     gcaaccaaat ttctatagat gtgtcaaact gacggttgat gattagattt ttggaagctg      6480
     taaaattaac caatgtttac gaaagtgccg aaagtcaatc aaggagtcaa tatttggatt      6540
     gatgttgttg atttgaagca aaattttaag tgaatacatg agtttacgag ttgtcgggac      6600
     atttccgata tggtagacgc ggtacaagct ttgtttacgt tttgagttga gaggtggttt      6660
     tgatattctg cgttctatgc tgcgattggg aaaggcccaa taatatagac aagcagttat      6720
     ttttgatttt gttgttgttt ttaagaaacc cttgcaggat ttgatgacgg atgcaaacac      6780
     aatttctttc actactacat ggtttgaact ttttttcttt agtatttgtt ataaaagtta      6840
     aacaattgta aatatgttta cttatagtta gttgtttatt tcttaatgga gttatttttt      6900
     agtttatatt tgggttatga aaatttgatc aattttcatt gatcaaattt tcataaaatt      6960
     gcgtggtgtg a                                                           6971
//
ID   Gypsy-49_CQ-LTR repbase;    DNA;    INV; 2181 BP.
XX
AC   AAWU01035675;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_CQ_;
KW   Gypsy-49_CQ-I; Gypsy-49_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2181
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 478-478 (2011).
XX
DR   Genome; AAWU01035675; Positions   31319   33499.
XX
SQ   Sequence 2181 BP; 547 A; 455 C; 530 G; 649 T; 0 other;
     tgtaacgttc tgcgttgatt tgggaattta tagtttattt ttttatttaa ttggtagaaa        60
     taatgcacat ctttacccta ctcatattct aaggttcgtt tccaataagc gaaagcttgt       120
     ttcttggctg cagggttata gtattagtaa gtcttaaata ccatgggtac gttcttgagt       180
     acgttggttg tatttttagt ttgctataaa gtattgcgag ttttgcgtgc ggggtcgtat       240
     ctgtaaatac caagagtgtg catgtgggtg gttagaaaat ttgcagttca aaatataggt       300
     ggcagtaaat acttagttta aaaaaaaatt gaattattct taactattta attccattgg       360
     gtaacacaaa tgtcaaaaat cctctgagtc atgacgaaga gggttgctgg ctagaaaagt       420
     tttccaactc gtccatttcg attacggagc ggctggaata aagaagtgcg cgtcgcgagc       480
     aatctttata aaagttaatt ttttcctttt tacgttcaat ttttctaagg taaaagtgta       540
     tatggtgcga gtgctttgaa gtgaattaac ttaaatattt tcctatccat tttttgtagt       600
     tctttcgaat ttattgaaac ttaaataaat ttcgcgtcga acttctttag tgaaataatc       660
     tttcgtaaaa taaaaggtaa agtaattgaa ttatattagg agttgtggga gctaattagt       720
     tgcattggac agcagcgtcg tcccacggcg ctttttatta cgggctggat ttttcttcgc       780
     ggggtctgcg gatttcgtgc gtcgaggcga tcagctacaa gcgtcgccat cttgtcgttt       840
     ggaggttaaa gttcggattt tgggcaagct gcctggcagc gccgccatct tgtgctagga       900
     gcgattaaag ggtcgcaagc tcgtgtgcca cgttacggcc cgcccattgg ggtagctaaa       960
     cagaggcgag tggcaagttc gttaaattaa ccgtaacgaa attaacgcag tggtcgtcaa      1020
     ttgccaccgt cgtttaaagt caccaaagag gtgacagccg agagccggta ttcgctgtgc      1080
     gcgccaatta cgttcagtgt ttgccagtcc aaggggaggg ttcccgtggc ctttatcggt      1140
     tgtgtagacg gaaacagtag tacgtgaagg ccggtattga taccccagcg tcccttcctg      1200
     cggaaataat ccggattagc tcgattcgtc gtgcgtagtg ctctctggcc ccgaaaccgg      1260
     aagtcttccg ccagccgcgc caccctctgc acctttaatt cggccaattt gcacacgagc      1320
     gacccccgcg tgtcaccaca ccgaacacgc cggttatcgg agcaaaccca gacgccatct      1380
     tgcggcccaa ggccgaaccg aacgagttcg tcgtttacca agcagcggac cactgggagg      1440
     actactaaac gcgcctgttg cagcgcgctg aaggaacacc acgaagcgtc gcacacccct      1500
     ggtcgtgcga catccacact gccagcagcg tgttcatcgg agcggcgccg gcatcggagc      1560
     aacgtgttca tcggcggtgg attcgccgcg ctcacgcaca ccaccgtaag cccgaaaaac      1620
     ctgcgcaggt atgtgggaaa attttatcat ggccatgagg tttttccccg gggggctgtc      1680
     caatgctagg gagattgtag gggataggtt tgtgagggat taaagaaagt gaaatgaaaa      1740
     atctttagtt tttctttggt ttcgacggag taaaaagttt gatggttctt ggaaccagaa      1800
     ataaattcat gccttaaatc actcacactg ttttattatt tacgttcttt acgttcgttt      1860
     ttggatatcc attccttatt ttccgattct ctttagcggt ttgaatggtt gaaaagtgtt      1920
     tcgctgtgaa ccttctggat tcaaatagtc gattaaggct ttgtttgcca cactgtttat      1980
     tatctacctg atttcgagca actcttggta ttgaacagat ctgacgtttc gcgcatttaa      2040
     accgtattaa cgaccctgaa agaattaaac ctcatgctta gtcgggcaat taaaacatga      2100
     caagtggtct ctcaacttga gagtggcgca taagccactg tgttacaggc tttccctagc      2160
     tcggttgggt gaacggttac a                                                2181
//
ID   Gypsy-49_DEl-I repbase;    DNA;    INV; 7469 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_DEl-I.
XX
NM   Gypsy-49_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7469
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 492-492 (2012).
XX
RN   [2]
RP   1-7469
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1315..2403
FT                 /product="Gypsy-49_DEl-I_1p"
FT                 /translation="MLKKVNAASRRLGLRSRGSLLDLGEIEEEEQHDQTNQ
FT                 ISNPIMNPLDSGNASASLSPTISNSTTIINTTLNAKDILAFVQHLPTYEGP
FT                 NDNLETFITSVEDLLMLIRSIDQSTYGQMILMSIRHRIRGRAHEALNLCNT
FT                 PLIWDEIKANLKRLYTCKKTEAILIREIQTLPSGLSINKLFFSIAKLRGQL
FT                 VSLAKNSNRDAQSITEKHALYADICLNAFFVGLNGPLKTIIRSRNPESLEK
FT                 AYELAQSEQNFYHQNSSSTGNNNNRYRDNFNDQQNNRHRGNSGERNRPYQR
FT                 YEQNQKQSDNNNTKKNDSRQTSQNRQESHSTRNQNPFRGNSRPNDKTPTAS
FT                 CNINDGANFSQEASENQSDS"
FT   CDS           2358..5876
FT                 /product="Gypsy-49_DEl-I_2p"
FT                 /translation="WCKFFTRSLGKPVGFLNKKSHGNSLPYVLLSSKFFTT
FT                 NPHKFLIDTGSTYSFIKPALISKDHIKEINAPIDIHTVLNKFQIQEYTDSI
FT                 IFEQFNSAKEPKFFLFDFHPHFNGLLGMDFLSSLDAKINIADSVLEIKKAS
FT                 LPILTSTNPVDTTHTVPLNTKIRLSLPVNIMEGDFLFETTTLNNDLSITGG
FT                 LYTALDGFAHFEVCNTSDYDQTLFLEEPLQTETSHIRDYDYLNCMSAGETP
FT                 QSTDLQTKLEIQTGHLNDEETQNLIKLCKQFKKLFYNENNQLTFSNVVKHS
FT                 IPTVDDVPIHTKSYRYPFIHKEEVRKQISKMLQQNIIRNSHSPWSAPVWVV
FT                 PKKTDSSGQKKWRLVIDFRKLNEKTISDRYPIPNIADILDSIGKTKYFTTI
FT                 DLASGFHQIEMNPRDANKTAFTVENGHYEFTRMPFGLKNAPATFQRVMDNV
FT                 LGDLIGKICLVYLDDIIIFSPSLQSHITDIKSVFTKLQIANLKIQPAKCNF
FT                 LRKEIDFLGHIVTQEGVKPNPDKIQAIKNFPCPKTVREIKSFLGLLGYYRK
FT                 FIRDFARITKPLTRQLKGKKSIVIDEEFKEAVAYCKNLLCNDPILAYPDFS
FT                 KPFTLTTDASNYAIGAVLSQGPNTNDRPISFASRTLSDTEVRYSTIEKEML
FT                 AIVWSVGHFRPYLFGRRFKIVTDHKPLVWLENLKGQNPKLLRWKTTLAAYD
FT                 YEVVYKKGSQNVVADALSRIEPNLNVNEDPTRIKIDQKPLNYFNIQTIFQI
FT                 GPSIPVQLITPFPHKIRRIFSEPEYTFDAITKILQTILRPNKTHAILAPDN
FT                 VFFIIEEAYNNYFTGNNLYNICRCSSILTDLSDPLEQKQKVQSYHLSSNHR
FT                 GIDETLNHLKRDIYFPRMKEIITQIIKDCDICLTLKYDRQPHRPFFQTPPA
FT                 PTGPLDIIHIDIYVINNTNNLTVIDKFSKFAQAYPLTNRNSIKVIAALSTF
FT                 FSTFGLPKKIVFDQGAEFSGNLFTDFLTQYNIEIHTTSFQQSTGNAPVERL
FT                 HSTFTELYRIVDNRRKELQLQSDHAEIFAEVLTTYNNAIHSSTAHTPFELF
FT                 HGRTHMFDKTVKFDNHHDYLEKLNEFRKEIYPKIQEKLDNQTEKRLTKLNE
FT                 NREPPIQVEPDDVIFRKENRRNKLTPRFSMHKVRTDKGVTLLTTRQQKLHK
FT                 QKIRKIIRKNNNTQ"
FT   CDS           5854..7467
FT                 /product="Gypsy-49_DEl-I_3p"
FT                 /translation="SGKIITLNELLHSRTTHSATQSFSLERLNGSSPLAFI
FT                 HLGDARITQSHTILTHVVDVQEFKECLTGIKDTLKALRLDETFNISLGIIK
FT                 GKLQQLEARIDTLLPHARTKRGLINGLGTILKSISGNLDNNDGQNILAELN
FT                 TLKVTSHILKNGQDKQENFNKQVIIRLSNITNHINNEQIKIQKFLDTAQNT
FT                 IFKELREDRENIFTLQYVNRINFHIDTLKEHINNIAESLLASKLGLIPKFL
FT                 FNKQEINTIRNMLTTQNITLQLDEHIYNILTPSCFTFNNKLLFSVKIPIFD
FT                 SKIYKFTHIIPLPINNSHFIISPEFLAHNNNILHQFRESCLKVEQEFFCQG
FT                 IHADPMIKNNKCLADIVNNEKETKCDMIDTGHETNIFEPEKGFIFIFNGKN
FT                 NTLKSTCNDETLLNGSFIVRYKNCTIWINGIEYSDKELVEHDHFTFVLPPV
FT                 VKITKNQTIKALSLEKLHLEALSTAGKIINMDNITHYKFTAIYSTISLILI
FT                 LIVILRLCHKPQTIFLPHPPTVTALVEPTIPSLWPSLHSRGG"
XX
SQ   Sequence 7469 BP; 2850 A; 1643 C; 1135 G; 1841 T; 0 other;
     ggcgcagccg gattcggact aaggagatct cacaatgctc cagctcctga tcatattata        60
     cctgtaagat aggtaagtga acaaatggtg gtgaaactaa gaggaagaaa gaaaagtaag       120
     gaaaaatgaa ataaataatt tggacaaaaa tatgaaaaaa aaattagtga aaagtgatga       180
     accaaattca cgcaagtgta cagttgttag tgttccctca agatgcgacc gaatacgtgc       240
     acatcaaacg ctgataaggc acccggtccg cattattgaa aaacaaaaat aaatagtgac       300
     aaattcataa aatcacacac aaccaaatgc aaaagaaaaa cttttaagat tcgtgaccga       360
     atatgtgcac atcaaacacg ataaggcacc gggatcacgc aatcaacaaa tacagaaaat       420
     cttttataca caagctgtaa attatttaca attgtcaaaa tttgtgaccg aatatgtgca       480
     catcaaacgc tgataaggca ccgggaccac ataaaaaata aatacactga aaaaaaaatc       540
     ctccatttac aaaccgtaaa ttatttacaa ctgtcagaat ttgtgaccga atatgtgcac       600
     atcaaacgct gataaggcac cgggaccaca taacaataaa tacactgaaa aaaaaatctt       660
     ccatttacaa accgtaaact atttacaaat tattaaagtc tgtgaccgaa tatgtgcaaa       720
     tcaaacgacg ataaagcacc gggatcacat accaataaaa tacacagaaa aaaaaaaaca       780
     tcttttacac acaaactata aaacatttac aattattaga attcgtgacc gaatatgtgc       840
     acgtcaaacg ctgacagggc accgggatca cgtagctgaa atacaaattt tgtttgtctc       900
     tctcttcact tgagttgaaa ctgctgcatc ggcagttttc gcttgttgtg ctggagagcg       960
     aataaatacc cccaactata cactaaacga gaaattggat tcaaacaatt atgtcatatt      1020
     atagctcaaa gaaaataata ataaaaaaaa ttatataaac ctctttctta gacgccatat      1080
     gttcacttgc ctatattcaa ttatattatc aaattttaaa caaatcacta actctattta      1140
     tatatgtaca ttacagtcaa cactaagaaa aacgacacag ggagaggata ccaacgagaa      1200
     aacacacaac aactaatcgc aacaagtaac atctacacat attaatacta atcatattaa      1260
     ttataagatt caaacattaa ttataagatt ctataacata aggaagtcaa ttaaatgtta      1320
     aaaaaagtta acgcagctag tagaagatta ggtttgagaa gtaggggcag tttgctagac      1380
     ctaggagaaa ttgaggaaga agaacaacac gaccaaacaa accaaatttc taaccccatc      1440
     atgaatcctt tagactccgg taacgcatca gcctccctca gtcccacaat tagcaactca      1500
     acgactatca tcaacacaac tttgaacgcg aaagatatat tagcattcgt acaacattta      1560
     ccaacttacg aaggccccaa tgataacctg gaaactttta ttactagtgt tgaggactta      1620
     ctaatgctca ttcgatctat agatcagtcg acgtacgggc aaatgatcct catgtctata      1680
     cgacatagaa ttagaggcag ggcacacgag gcattgaacc tttgtaatac accacttatc      1740
     tgggacgaaa ttaaagcaaa ccttaaacga ctttacactt gcaagaagac ggaagctata      1800
     ttaatccgag aaattcaaac cttaccaagc ggactctcta ttaataaact atttttctca      1860
     atagcaaagt tgaggggcca actggtatca ttggctaaaa attcgaaccg agacgctcaa      1920
     agtatcacag agaaacacgc cctatacgcc gacatctgtc ttaatgcatt ctttgtcgga      1980
     ttaaacggcc cattaaaaac aataattaga tcccgaaatc cagaatcttt agaaaaggct      2040
     tacgagttag ctcagtcgga acagaatttt tatcaccaaa attctagctc taccggtaac      2100
     aacaataatc gttaccgcga caattttaat gatcaacaaa ataatagaca ccgcggaaat      2160
     tcgggcgaac gaaaccgccc atatcaacgt tatgaacaga accaaaaaca atcggacaat      2220
     aataacacta aaaagaacga ctcacgacag acatcccaaa accgtcaaga aagccactca      2280
     actagaaacc aaaacccatt ccggggtaat tcaagaccaa atgacaaaac tcctactgct      2340
     tcctgcaaca tcaatgatgg tgcaaatttt tcacaagaag cctcggaaaa ccagtcggat      2400
     tcttaaacaa aaagtcccat gggaactctt taccttatgt ccttttatct tcaaaatttt      2460
     ttacaactaa tccacataaa tttctcatag atactggatc aacttattct tttataaaac      2520
     cagccttaat ttcaaaagac cacattaagg aaataaacgc tcctattgac attcataccg      2580
     ttctcaataa attccaaatc caagaatata cagactctat tatttttgaa caattcaatt      2640
     cagcaaaaga accaaaattc ttcttatttg atttccaccc acattttaac ggtctcttgg      2700
     gtatggactt tttaagtagc ttggatgcaa aaataaacat agcggactct gttttagaaa      2760
     taaaaaaggc ctctttgccg atcctaacaa gcacaaaccc ggtagacact acacataccg      2820
     taccactaaa tacgaagatc agattgtcac tccccgtaaa cataatggag ggagatttct      2880
     tattcgaaac tacaacccta aacaatgact tatctatcac agggggacta tatactgcac      2940
     tggatggctt cgcacacttc gaagtctgca acacatctga ctatgaccaa acactattcc      3000
     tagaagaacc gttacaaacc gaaacgtctc atatacgaga ctatgattat ttgaactgca      3060
     tgtccgcggg ggaaacccca caatccacag acttacagac caaattggaa attcaaacgg      3120
     gacacttaaa cgacgaagaa acacaaaatt taattaaact ttgcaaacaa tttaaaaaac      3180
     tattctacaa cgagaataat caacttacgt tttcaaacgt tgtcaaacat tcgattccca      3240
     cagtggacga cgtccccata catacaaaat catacagata cccttttata cacaaagaag      3300
     aagttcgtaa acaaatttca aaaatgcttc aacaaaatat tatcagaaat agccattccc      3360
     cttggagcgc acctgtatgg gtcgtaccta agaaaaccga ttcgtcaggt cagaaaaagt      3420
     ggcgattggt aattgatttc cgtaaattaa acgaaaaaac gatttcagat agatatccga      3480
     ttcctaatat agcagacata ttggacagta tagggaaaac taaatatttt acaacaatcg      3540
     atctggctag cggttttcat cagattgaga tgaatccacg tgatgctaac aaaacggcgt      3600
     tcactgtcga aaatggacat tacgagttca cgagaatgcc tttcggtctc aagaacgcac      3660
     ctgcgacatt ccagcgcgtt atggacaacg tcctggggga tctgatagga aaaatttgtc      3720
     tcgtgtatct cgacgatatt attatatttt ccccttcact gcaaagccac ataacagata      3780
     ttaaatctgt attcactaaa ttacaaattg caaacctgaa aatacaaccc gcaaagtgca      3840
     atttcttaag aaaagaaatt gactttttag gacacattgt tacacaagaa ggagtaaaac      3900
     ctaatcccga caaaattcaa gcaattaaga atttcccttg cccaaaaact gttagggaaa      3960
     ttaagtcctt tttaggccta ctgggttatt acaggaagtt cataagagac ttcgccagaa      4020
     taaccaaacc tttaaccaga caattgaaag gaaaaaaatc aatagtgata gacgaagaat      4080
     ttaaagaggc agtagcctat tgcaaaaatc tcttgtgtaa tgacccgatc ctagcttacc      4140
     ctgatttctc gaaaccgttc actctgacca cggacgcaag taattacgcc ataggcgcag      4200
     tattatctca aggtccgaac accaacgata ggcctatctc atttgccagt agaacactat      4260
     ctgacactga agtgagatat tcaacaatag aaaaagaaat gcttgcgatt gtttggtctg      4320
     taggacactt taggccctac cttttcggtc gccgattcaa aatagtgacc gatcacaaac      4380
     cgttagtctg gctagaaaat cttaaaggcc aaaacccaaa attacttcgg tggaaaacca      4440
     ccctagccgc ctatgactac gaagtagtct ataaaaaagg atcacagaac gtcgtcgctg      4500
     atgcactcag cagaatagaa cccaacctaa atgtaaatga agatccaaca agaattaaaa      4560
     tcgatcaaaa accactaaac tattttaaca tccaaacaat atttcaaatc ggtccatcaa      4620
     ttccggtaca attaattacc ccattccctc acaagataag acgcatattt tcagaaccag      4680
     aatacacatt cgacgcaatc acaaaaatat tgcagactat tttaaggcca aacaaaacgc      4740
     atgctatact agcaccagac aacgtcttct ttataattga agaagcatac aacaactact      4800
     ttacaggaaa taacctgtat aatatttgtc gttgctcatc aattctaacc gacctttctg      4860
     atccgctaga acagaaacaa aaagttcagt cataccatct tagtagtaac cacagaggta      4920
     tcgacgagac ccttaaccac cttaaaagag acatttattt tccacgtatg aaagaaatta      4980
     ttacacaaat aattaaagac tgtgacattt gcctaacact caaatacgat agacaacctc      5040
     acagaccctt tttccaaacc ccaccagcac caacaggtcc cttagacatt atccatattg      5100
     acatttatgt aattaacaat acaaataact tgaccgtcat tgataaattc tcgaaattcg      5160
     cacaagcgta tccactaacc aatagaaatt caattaaagt aatagcagca ctatcaacat      5220
     ttttcagtac cttcggccta ccgaagaaaa ttgtcttcga ccaaggtgca gaattttcag      5280
     gaaatctgtt caccgatttt ctgacccagt ataatataga aattcacacc acctctttcc      5340
     aacaatcgac gggaaacgca cccgtcgaaa gactccactc gacattcaca gagctctata      5400
     gaatagttga taaccgcagg aaggagcttc aactccaatc cgatcacgcg gagatatttg      5460
     cagaggtatt gacaacatat aataatgcaa tacactctag cactgctcat acaccgttcg      5520
     aactttttca tggcagaacc cacatgtttg acaaaacagt aaaattcgac aaccatcacg      5580
     actatttaga aaaactgaat gaattcagga aagaaatata ccctaaaatc caagaaaaat      5640
     tagacaacca aacggaaaaa agactaacca aattaaatga aaatagggaa ccaccaatcc      5700
     aagttgaacc ggacgatgtc atctttagaa aagaaaatag gagaaacaag cttacaccta      5760
     gattttccat gcacaaagtc aggaccgaca aaggagtcac gttactaaca accagacaac      5820
     aaaaactaca caaacagaaa ataagaaaga taatcaggaa aaataataac actcaatgaa      5880
     ctacttcatt ccagaaccac ccattccgcc acgcagtcct tctctttaga aagactcaac      5940
     ggatcttcac ccctcgcttt cattcatctg ggagacgctc gtataacaca aagccataca      6000
     atcctaaccc atgtcgttga cgtccaagag tttaaagaat gccttaccgg aataaaagat      6060
     acattaaaag cccttagact agatgaaaca tttaacattt cgctaggaat tataaaaggg      6120
     aaactgcaac agctagaagc cagaatagac accttactcc ctcacgctag aacaaaaaga      6180
     ggtttgatta acggcctagg gactattctc aagtcaattt cgggtaattt agacaacaac      6240
     gacggacaaa acatactcgc agaactaaac accttaaaag ttacctcaca catattaaaa      6300
     aatggtcaag acaaacaaga aaattttaat aaacaggtca taattagact cagtaatatt      6360
     acgaatcaca taaataacga acaaattaaa atacaaaaat tcttagacac agcacagaat      6420
     accatcttca aagaacttag ggaagataga gaaaacattt ttacactaca atatgttaat      6480
     cgaataaatt tccatatcga caccttgaaa gaacatatta acaatatagc tgagagcctt      6540
     ctggccagca aattgggcct aatcccaaaa tttttattta ataaacaaga aataaatact      6600
     ataagaaata tgttaaccac acaaaatatt acactacaac tagatgaaca catctataat      6660
     atacttacgc catcttgctt tacttttaat aacaaactat tgtttagcgt taagatacca      6720
     attttcgatt caaaaattta taagttcacc cacatcatac ccctaccgat aaataattcg      6780
     catttcatca tttcccctga attcttggca cacaacaaca atattttaca tcagtttcgc      6840
     gaaagctgcc ttaaggtaga acaggagttc ttctgtcagg gaattcacgc tgacccgatg      6900
     ataaaaaaca acaaatgcct ggcagacatc gtcaataacg aaaaagaaac aaaatgtgac      6960
     atgatagata caggccacga aacgaacatc tttgaaccag agaaagggtt tatcttcatt      7020
     ttcaacggga aaaacaacac ccttaaatca acctgcaacg acgaaacact tttaaatggc      7080
     tctttcatag tacgctataa gaattgtacc atatggataa atggaataga atacagcgac      7140
     aaagaactgg tggaacacga tcatttcacc tttgtactcc caccagtcgt caagataaca      7200
     aaaaatcaaa cgatcaaagc actatcattg gaaaaattac acttagaagc cctttcgaca      7260
     gccggaaaaa ttatcaacat ggataatatt acacactaca aattcacggc catatattca      7320
     acaatatcat tgatccttat cctgatcgtc atcctccgtt tatgtcataa accacagacc      7380
     atcttcctcc cacacccgcc gactgttact gccttggtgg agccgaccat tccttcgcta      7440
     tggccctctc tccactctag ggggggagg                                        7469
//
ID   Gypsy-49_DEl-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_DEl-I;
KW   Gypsy-49_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-399
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3092-3092 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. AG-TT termini. 4-bp TSDs.
XX
SQ   Sequence 399 BP; 129 A; 113 C; 64 G; 92 T; 1 other;
     agttaccgca cacattgttg cggacacatc gccgcccccc aaacctcagc gactcaacca        60
     aatggtcatt aacccaaaca ctggatacaa acgctgagtt tggggaacca acggaagtaa       120
     gcagaaccaa cacttaacag ctacgcgaaa ccacaaccaa acaacacacc agatatgcca       180
     actaggcaga ttctcacccc actcgaatct gctggatatg cgaattcccg atcacaccat       240
     tccattctca tatattccac tgtatcccat aagttacttc tsagtttgta gaacaataaa       300
     gaatcattat aattttgacc gaagacgaag caagtcctct tttcttttgg tatcagaagt       360
     gggatattcc cccccccagt atcagcagat actgtaatt                              399
//
ID   Gypsy-49_DWil-I repbase;    DNA;    INV; 4740 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_DWil_;
KW   Gypsy-49_DWil-LTR; Gypsy-49_DWil-I.
XX
NM   Gypsy-49_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4740
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1867-1867 (2012).
XX
RN   [3]
RP   1-4740
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..4209
FT                 /product="Gypsy-49_DWil-I_1p"
FT                 /translation="SEVGSNSRPTINEEQFRILLEQQNRNFWELAKTFRAS
FT                 PSESRQDGEIVLPKFNSDAAGANATQWCATVDIVLKEKPLQGSALILALTK
FT                 SLEGSSSQWLSQICYPGITWEQFRQLFEQRYENSETPAATILNLLNSRPNS
FT                 GECLAVCASRLMTSLLTKWRGMDHEQIAASVVLGHLANYDRRLQRIAYTGT
FT                 IRSRRDLQSELQVFSFDNKRSSSSDDYSIAKRAKTLPIKCYSCGKLGHRKS
FT                 ECRVQKPSTSGEDQRASSVRAKVVTCYRCHEPGHISTQCPKSSDGDAGSRV
FT                 HKRVNLCVVDEPKAIMLHRGENFPITFDSGAECSLVKESIAHKLSGKRTNN
FT                 VISLSGIGNVSVVSSIQITSNVMINGNCIEVVFHVVQDNNMKNNIVIGREI
FT                 LAQGYSAIVSTEGVEIIKDKTVNVCSVKSYENDFNNLATEAQGEDKNQLLR
FT                 LLRKHSKSFIRGTPLTRVTTGVMSIRLVEPTKTVQRRPYRFSPSERELLRS
FT                 KVQELIDYNVIRPSSSPYASPALLVKKKNGSVRLCVDYRELNRNTIADKFP
FT                 LPLISDQIARLRGARYFTCLDMACGYYQVPLHENSIEYTAFVTPDGQFEFL
FT                 AMPFGLKNAPSVFQRAVMKAVGDLAFSYVIVYMDDIMIVASTKEEAIERLE
FT                 IVLNILTKAGFSFNVEKCSFLRDSVQYLGYEVQAGEIRPNLRKIEALSALP
FT                 PPRSITTLRQFIGLASYFRQFVPGFSQLLKPLYSLTSIKINFDWTNEHEKV
FT                 RKQIIDILTSKPVLVIFDPKYPIELHTDASAIGYGAILLHRIENKPYVVEY
FT                 FSKTTSVCESKYTSYELETLAVVNAVKHFRHYLHGNRFVIFTDCNSLKASR
FT                 TKIELSPRVYRWWAFLQAFDFDIQYREGKRMAHVDFLSRNPLPDKKKENQN
FT                 KVVEKHVQLMEISENWIQAEQQRDQDILQTINKLSEGELSKDLAATYEMRA
FT                 NVLYRKIQRNCRTRCLPVIPRTFRWSVINQVHESILHLGWEKTLDKVYEHC
FT                 WFTGMAKYVRKFVENCITCRVTKSASGKVQVELHSIPKISIPWHTLHIDIT
FT                 GKLSGKNDRKEYVIVQIDGFTKYVYLYHTYKLDAVSCIDALKSSIALFGVP
FT                 ARLVADQGRSFTGLKFVEFCASQKIQLHLIATGASRANGQVERVMSTLKNL
FT                 LTIVESSERSWQDAIGDVQLALNCTVNRVTKSSPLELLIGKSARPLGLVPI
FT                 DDDETAIDLNEQRSQATRNMDNAASYDKLRFDKDKAKVVRFSKGDYVLIKN
FT                 SERQQTKLDPKFRGPFMVIEVLEGDRYTLKSMSSKRQYKYPHDSLRRMPEV
FT                 QVPSELDIDGDEYDSSGETGETDRNGTVGRDCGETGETDRMETVGKDCETG
FT                 ETDRMETVGKDCDEETGETDRMETVGKDCDKETGETDRMD"
XX
SQ   Sequence 4740 BP; 1576 A; 779 C; 1082 G; 1303 T; 0 other;
     tcagaagtgg gatctaactc aagaccaaca ataaatgagg agcagtttcg cattttatta        60
     gaacaacaaa atcgaaactt ctgggagcta gcaaaaactt ttcgtgcatc gcctagtgaa       120
     tctcgacaag atggtgaaat tgttctaccg aaatttaact ccgacgctgc tggagccaac       180
     gccacgcaat ggtgtgctac ggtggacatc gttctaaaag aaaaaccatt gcaaggtagt       240
     gcgttaattt tggccttgac gaagtcattg gaaggaagct cttcgcagtg gttatcgcag       300
     atttgctacc caggcatcac atgggaacaa tttagacagc ttttcgagca aagatacgaa       360
     aactcagaga caccggccgc aactattttg aatttgctga acagtcgccc aaattctggc       420
     gagtgtcttg ccgtgtgtgc aagtcggcta atgacgtcac ttttaacaaa atggcgtggc       480
     atggatcatg agcaaattgc tgcatcggtt gttcttggtc atttagcaaa ctatgaccgc       540
     agactacaac gaattgcgta cacagggact attcgcagca gacgagactt acagtccgag       600
     ttacaagtct tttcgtttga caataagcgg tccagctctt cagacgatta ttcaattgca       660
     aagcgtgcta aaacattgcc aatcaaatgt tactcatgtg ggaagcttgg acacaggaag       720
     tcggaatgca gagtgcagaa accttctaca tctggagaag atcagcgagc ttcgtcagtg       780
     cgtgctaaag tcgtgacatg ctatcgatgt cacgagccgg gacacatctc tactcaatgc       840
     cccaagagtt cggatggtga cgcaggatca cgtgtgcata agagggttaa cctatgtgtc       900
     gttgatgaac caaaagcaat tatgttgcac cgaggtgaga attttccgat tacatttgat       960
     tcaggcgcag aatgctcgtt agtcaaagag agcatagcac acaaactgtc tgggaaaaga      1020
     acaaataacg taatatcatt aagtggaatt ggtaatgtta gtgtagtttc gtcaattcaa      1080
     atcacaagta atgtaatgat aaatggaaat tgtatcgaag tagtatttca tgtagtccaa      1140
     gataataata tgaaaaataa tattgtaatt ggccgcgaaa ttttagcaca aggatactct      1200
     gctatagtat caacagaagg tgtggaaata attaaagaca aaacagttaa cgtttgttct      1260
     gtaaaaagtt acgaaaatga ttttaataat ttagcaactg aagcacaggg agaagataaa      1320
     aatcaattgt taagattgtt aagaaagcat tcaaaatcat tcattcgcgg aactccttta      1380
     actcgcgtaa ctactggtgt aatgtcaatt cgattagtag aacccaccaa gactgtgcaa      1440
     agacgccctt acagattcag tcccagtgaa agagaattac tccggtcaaa agttcaagag      1500
     ctaatagatt ataatgtaat aaggccgagc agttcacctt atgctagtcc agcactttta      1560
     gtaaaaaaga aaaacggatc tgtaagactc tgtgtcgatt atagggaatt aaatagaaat      1620
     accattgcag ataagtttcc tctaccatta atttcagatc agatagctag attgcgtgga      1680
     gcaagatact ttacttgctt ggacatggct tgcgggtatt atcaggtccc attacacgag      1740
     aactccattg agtacactgc attcgtcact cccgacggac aatttgagtt tttagcgatg      1800
     ccgtttggtc taaagaacgc accgtcggtt tttcaaagag cagtgatgaa agcagtgggc      1860
     gatttggcat tttcgtacgt tatcgtctat atggatgata taatgatcgt ggcgtcaact      1920
     aaggaagaag ctattgaaag attagagatc gtcttgaata ttttgactaa ggcaggcttt      1980
     tcgtttaatg tagaaaaatg ctcatttttg agggattctg ttcagtatct aggatacgaa      2040
     gtacaggcgg gtgagattcg tccaaatttg cgtaaaattg aagcattaag cgcattgcca      2100
     ccacccaggt caattacaac attgaggcaa tttataggat tggcttcgta ttttcgccaa      2160
     tttgtaccag gattctccca gctattgaaa cctctttact ctcttacatc tattaaaatt      2220
     aattttgatt ggacgaatga acatgagaag gttcgcaaac agattattga tatccttaca      2280
     agcaaaccag tcttggtaat attcgatcct aaatacccca tagaactgca tacagatgca      2340
     agtgccattg gctatggagc catacttttg catcgaattg aaaataaacc gtatgtggtt      2400
     gaatatttca gtaaaactac tagtgtgtgt gaatcgaaat acacgtctta tgagttagaa      2460
     acactcgcgg tagttaatgc agtaaaacac tttagacatt atctacatgg taataggttt      2520
     gtcattttta ctgattgtaa ttcgttaaag gcttctagaa caaaaattga gctatcacct      2580
     agagtgtatc gctggtgggc attccttcaa gcattcgatt ttgatattca atatcgcgaa      2640
     ggcaaacgta tggcccatgt agattttctg tcaaggaatc ctttgcctga taagaaaaaa      2700
     gagaatcaaa ataaagttgt agaaaaacat gtacagttga tggaaatttc tgaaaattgg      2760
     attcaagccg aacaacaacg tgatcaggat attttgcaaa caattaacaa gttgagtgag      2820
     ggtgaacttt ctaaagattt agctgcaact tatgaaatga gagctaatgt gctttacaga      2880
     aaaattcaaa gaaattgtag gactcgttgt ttgccagtca ttcctagaac ctttagatgg      2940
     tctgtaataa accaagtaca tgaatcgatc ttacacttag gttgggaaaa gaccctagat      3000
     aaagtgtacg agcattgctg gtttacggga atggcgaagt acgttcgaaa gtttgtagag      3060
     aattgcatca cttgtagggt gacaaaatca gcgtccggaa aagtccaagt ggaactgcat      3120
     tcgattccga agattagcat accttggcac acgttgcata tagatatcac tggaaaacta      3180
     agtgggaaga acgatcgtaa agagtatgtc attgttcaaa tcgatggttt tacaaaatat      3240
     gtttatttgt accacactta taagcttgac gcagttagtt gtattgacgc attaaagtca      3300
     tcgattgcgc tttttggagt acctgctcga ttagtggctg atcaaggcag aagtttcacg      3360
     ggattgaaat ttgtcgaatt ctgtgcttct cagaaaattc agcttcacct gatagcgaca      3420
     ggtgctagcc gggcaaatgg acaggtcgaa agagtgatga gcactttaaa aaatctatta      3480
     actatcgttg aatccagtga gcgttcatgg caagatgcta taggggacgt tcaattagca      3540
     ttaaactgta cagttaatcg agttacaaaa tcgagtccgt tagaattatt aatcggtaag      3600
     agtgctcgac cattaggatt agttcccatt gatgatgatg agacagcgat agacttaaat      3660
     gaacaaagat ctcaggctac aagaaatatg gacaatgcag caagctatga caaacttaga      3720
     tttgataaag acaaggcaaa agtagtcaga ttcagtaagg gagattatgt tctgatcaaa      3780
     aatagtgaga gacaacagac taagttggac cctaagtttc gtggaccttt tatggtcata      3840
     gaagtattag aaggcgatag atatacgttg aagtccatgt caagtaaaag acagtataag      3900
     tacccacatg atagtttacg gagaatgcca gaggtgcagg taccaagcga gctggatatc      3960
     gacggagatg agtatgattc atctggtgaa acgggtgaaa cagaccgtaa tggcacagtt      4020
     ggaagagact gtggtgaaac gggtgaaaca gaccgtatgg aaacagttgg aaaggactgt      4080
     gagacgggtg aaacagaccg tatggaaaca gttggaaagg actgtgatga agagacgggt      4140
     gaaacagacc gtatggaaac agttggaaag gactgtgata aagagacggg tgaaacagac      4200
     cgtatggact agtgaatgag gcactagggg aatgatgttt ttagaaagag tgttgttgtc      4260
     gatgctacgt ggtggtacct tgccgtggat tcttgaaacg taaatgagaa cataaagaaa      4320
     agagaatgtt tgtaaaacta aaagcgaaaa tgttgtttga taagaatgaa aatgtggagg      4380
     ttataaaata agaaaatatt gaaaacattg taatgtttaa tgaattgtaa aagaaatatg      4440
     aacaaacgaa tgttgaaata ggcaagtaga aaaatatgaa ataagaattt ttagttacga      4500
     aatatgttat agcaaataag agattttgaa ttaacattaa actggatttg tcaaactgca      4560
     taaaacagaa tgtttttggt tcagttagtt aaaacaaaga tgtgaaaatg atgttttgta      4620
     aaagtggttt atattcctgc tacacgagga cgtgtaattt gtcaggatga ccgtgtcgga      4680
     gattgtaaag gtggtttata ctcctgctac acgaggacgt gtaatttgtc aggatgaccg      4740
//
ID   Gypsy-49_DWil-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_DWil_;
KW   Gypsy-49_DWil-LTR; Gypsy-49_DWil-I.
XX
NM   Gypsy-49_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-306
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1868-1868 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 306 BP; 89 A; 57 C; 72 G; 88 T; 0 other;
     tgtcggagat tgaattaggc atttctaata atttgaattg tgcgcctact gttaaggcga        60
     attgatcagt gttaagtaat gaatatcttg actgatgtag aactgtttaa cactagacat       120
     gtgcgatgac agcataggct gtcatcgagt gtggctcggt gtgcggttga gagaattcag       180
     tctcttttcc ttctggaagt caaccgtaaa gcacgtcgag actcgctgca caaaattagt       240
     ggaaaaatgg aatccaacaa cggaatcaac gattcaggaa accctgaatt cttctcttcg       300
     ccgata                                                                  306
//
ID   Gypsy-49_LMi-I repbase;    DNA;    INV; 5164 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5164
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 5164 BP; 1840 A; 760 C; 1064 G; 1486 T; 14 other;
     tctggtggag gagctgggat cggcgtaaat ttctgaccaa taagtgctca catagttgcc        60
     tattgttttc cgatgaattt gtgtcaaaat caacatcaaa tgtggtcaat aaacaaagaa       120
     gaatgagaat aatcggcgga agtgttcgac cgcaagtgca acagcagcag taatgttata       180
     gaacttcggg agcatcggtt ctggaagaat ctgtcgcaga atcacgatcg tgagtaaagc       240
     aatcatcatc agcagcagca actccaacta agtgccaagg tatctcaaga attttttttt       300
     tttttgcaag tgctatsagt gttcggtctt gtgaagaaat cagtggttac atcgatgtct       360
     ttattttgtg attttatttt gtgtgattaa aaatcaaaat ggaaaacttg aatggagaaa       420
     atatcgagag gaaagagcag gtggtattgg ctcagaatgt aaataatagg cctattsatg       480
     atgatcacgt ttgtgaaagc gattcggaaa aggaaactga ggaagcggac aaaaatagta       540
     gtagtgtttg ttcttcattt cggggtctag acgaaagtga ggcaataaac agtagggatg       600
     caaacatatt tgataggctt gccaatttaa tccggctcac ttctgaacaa caaagtagcg       660
     ggataagaaa actaggcgaa aaactagata aacaagggca aaagttggat catttagaaa       720
     aatatgtaca tgatcaaagt gaaaacctaa aacgtgtttg caaagaggtt gagcaaattc       780
     agaccacagt aaacagcact gtagaaagaa tgaaaaatat cgaaggggag gtttccattt       840
     tgcattctaa acatgaaaaa ctcaatttaa ggttaaacaa agttgaagat agaactgtag       900
     aaatagaaaa tagcattgga aaagaggcaa agaaaaacga gaaaatctgt actgatatgc       960
     atacagtgaa cttgtggctc aaaaattggc cgaggcagaa actttaaatt caggaaacag      1020
     agatgaactg agagattttc tatgggaata taatgatatt ttcagtgtca agccaggaag      1080
     agtaaaaggt tatcactgta gattgaaact gaaaactcat gagccattct ttgttaagcc      1140
     ttatgccata gcaattggaa aaaggaagga agtagaggag gagttggaaa aattgcaaag      1200
     gtggaaaatt atagaaagaa gtgcagtagt acaacaaccc gttagtgtag tgtccaaggg      1260
     ggtggcggta caagaattgt tcgcgtttaa acaaaaccta gaggacagac agaccaccct      1320
     gaacattgag agctgcttaa taagtttcaa gataccaagt ttatgactag ctagatctga      1380
     catccgggtt ccatcaaata gaactagaag agaatcgaga aaatacacag catttttata      1440
     tgacaggaaa agctttcagt actgtgttgt acctttggtc taaatgtatc ggtggccgaa      1500
     ttcatcaggg gcttagattg tgtgttggga aggaactttc ggaaaaatta accataacgt      1560
     agatgacgtc ttagtatcga gtaaaagttg ggaagaacac attaacacct taagggaaat      1620
     agggagaaaa atgggattag gggaagacac taaaactaga aaaatgcaag tttgctgtca      1680
     acaggtaaaa tttttaggtc caccatcact gaagagggag tgttaccaga tcaagaaaaa      1740
     gttgaagcca cggcaaaact tccaaaccaa gaaacaaaaa agaacttaag tcattttatg      1800
     ggctagtggg attctataga aaacacataa gaactcagca ttgaatgctc caagctgaat      1860
     aatttattaa agaaaagtac catatgggaa tggctagaga atgtcaggta gcatttgacg      1920
     aaattaagca gcagttatgt gatggcaaga tgttacacag gcctgatttg tccttaccct      1980
     tttgcctcag acagatagtt gtaatacagg attgggagca catctattcc aggaaaaaga      2040
     aatcaatgga aagatagaac atcactcgat agcatttgca agcaggatcc tacagaagca      2100
     cgaaagaaac tacatgattg cagagaaaga attattagca atagtatggg gattcaaaaa      2160
     attcaggaat tatttgcttg gtcacaaggt aaaagtgtat tcagaccaca aagctctgtc      2220
     atatattcaa gagtgcaagc ctgtgtcacg aaagaattac taggtgggca gcttacctac      2280
     aacaattcga ctacacggtc gagtacatca agggcaagga gaatgtaata gcagatgctc      2340
     tgtctaggtt agctgtgggg ggtgaaggag aatatgagaa gaaagtttag ataaaaatct      2400
     caaaattatg tatctaaggg gagtgaagga tgaaaatgaa ataaaagaat ttgtagtcag      2460
     ttagatgtaa tcaaaaccat gacgaccact ggaaaaccgt gaaaagctat ttagggaaga      2520
     aggggtatag aaagtacaaa gatactatca agtctacaaa ggcatactat tttacagaat      2580
     agtctgacag cgacggctga aagtttgttg gccagaccaa tacatagaca cattaataag      2640
     atacactcat gacagcttcg gacattgtgg accactgaag tgtattcaaa aaattcagga      2700
     gatcatatac tttcacaata tttctagaag agtcaggaag ctcttgctag ttgtgaccgt      2760
     tgccaaaggg tgaaagtgag taacaaaacc agcagagggt atatgcaaag tgttttccct      2820
     gataaacaaa tggacttagt aggtgtcaac ttatttggcc aattacccag agcaaaaggt      2880
     ggtttccagt acatatttgt gatggttgat ttattctcca agtatgtgaa actgtacccg      2940
     ttgaagaagg caaccagcaa gaaaattatc gataaaatca caaaagatta cttcaatcga      3000
     gttggcatgc ccaaagcaat tttgtctgat aatgggagtc agtttacttc gaaaacatgg      3060
     aaagagttta caaatgatta caacataaac acatactgat ctcagcatat tcacctaaat      3120
     gtaacccagt ggagagatac atgagagaag tcggaagatt atgtaggack tattgcaaca      3180
     aagatcatgc taactggata gaatagatta atagttttga agacataatk aacagcctac      3240
     aacwttccac cacagggttt tcaccctatg aaatttwgtt tgattacaga attgatagaa      3300
     ttcccagact gtacaggcat ttccgctcat gagagggagg aagttgttag aaaaacgatg      3360
     aaacagtacw atgacaagag aaaacagaga catgataggg acctcaaacc kacgaaattc      3420
     ktcataggag acctkgtatc aacaaaaagt tacacaaaat ccaaatcagt gagcaacgaa      3480
     atcaaaaagt tctttgatat ctatatagga ccattttaaa tacctgaaaa cccgcaccct      3540
     aatgcctata ggcttatwtm cccaaagtcg agaaaattgt atgggctaag aaatgtmaca      3600
     caattgaagg catacaaaaa tcccgaataa attgataacc actmttaact agctattccg      3660
     ttgggatgtg tctgagtact taaacttaca tttgtacttc aagatttaat ttaaaatttg      3720
     tatatttact gattgagagt tagttctgac caagatatta ctttgaacca agtttataaa      3780
     atatggtttt ggagtttctg ttttgcccat gatacgagaa attatcttaa atgggagata      3840
     gaaggcatgc aactacatca cctttgacaa tgacatgttc agtggagagg acatagcaaa      3900
     taatattgta taaatataat ttaagtgaaa gttatttttt attgtgtgct gttatgtgca      3960
     gattaatttt ttaatattta ttattcacag actgatttat tttcaatttt aaatgtattt      4020
     atctaaacag aattgcaaaa tgtaaatttg gtcatctttg gactgatgtg tgtaatgacc      4080
     agagactgtt catgacaaaa ctattgcata ctgtgacatt aacgtatgaa taggccagac      4140
     ctaaaaacaa ttatatatgt gtaagaatga atagagacag aaaatgttta ctcctgcctc      4200
     ccttagacat ttgattaaat tatgttaagt caacagctgt actacatggg aaataacttt      4260
     gtttactgca attagggtgc aaatagtact tacaaattag ataaacagta gaagtagaac      4320
     tatgtaatga tctaacatca tcgtattatg tgcaaacagc agcattttaa tttttatttt      4380
     atttatttaa tttctttttt tatttactaa ttttaatgcc aagtgtttta attaaaaatc      4440
     atgtgcaaac agtagtattt taagttttgt tttgtattta ccaattttca atgtctgtgc      4500
     ttgaatgtaa aatgtgtaaa atttgttttg tatttgcctt tttatagtgt caagtgtttt      4560
     taatttaaaa tatggccaat tttaaacttc cataatatga gtcacatatt attatttgta      4620
     tatgtatatt ttaagtgttc tgtaacctga agaatagtaa atgatatgac tggtgacaca      4680
     gtcactggtt gaaaggctga ataggttaac gatctctgaa atatctgcgt tcccttattc      4740
     gaaaatatta gtgcttcaac agtacacata cgcaattacg tatatctttt gaatcttatt      4800
     atttgtttcg atcttgcttc agactggtgt actaaaagag tagctttttc acttaactta      4860
     catgtcaaaa tactaagact ttgatctgtt tatcaaactt gggtaagaaa gggtttatat      4920
     aatatgatgg agtatttgct gagcatagaa tcttgtgttg tgttaagaac ttggaatctg      4980
     tgtatgttgt acagacatgt tttacagttt aaaattcatg caattggtac tttgattatg      5040
     agaaataata cataccacag aaaatttgtg ttgactaaaa tattgtagaa atgtacctgc      5100
     tgttacttga acagatctca aaagtcttgt ccagtcttcg gctgtcaagt cttttggggg      5160
     tgtg                                                                   5164
//
ID   Gypsy-49_LMi-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-306
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 306 BP; 79 A; 40 C; 86 G; 99 T; 2 other;
     tgaaacgtaa cagctagggt gagaatcgat atttgttgcg agaatgctct cgctcacttt        60
     tgtctgtgtt aagtcgaagt ggagggtctt tgatcggaga tctttggtgt ggccggaagt       120
     ggcgggaaka ackagtgtgt ggtggccatg tgcttttgta tatagtgagt ttggtatttt       180
     gtaacggcaa ggtgttaaaa taaagattgt ggtgaaaaca tgtgagcact atttattggt       240
     agattgttta tttacccggt cagtagccga attcccagtt actaaataat gaagtggaac       300
     atttca                                                                  306
//
ID   Gypsy-49_MSe-I repbase;    DNA;    INV; 6943 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-6943
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 926-926 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6943 BP; 2401 A; 1391 C; 1216 G; 1935 T; 0 other;
     tcgtaattgg cgcagtcggt aggatactcg aatatatcca cgttaaatcg caatccgcgc        60
     gcgtgcgatc gggtatccag aatctacgga agctgcagcc gagggaatcc agacttcgat       120
     tcgagcaaga aataccagaa gcagtaatgt tgtaagtact ttgaatcttt catagtcctt       180
     accctcctta tcattatcct tataatatag agataggtat aatatatatc gtatatatta       240
     tatacatatt tttttttata atatagttag gtgtaatctt ccaaaatttt ccatccgaga       300
     gaattaagga acagtaggtt aagtaacagt agagtaactc ataggttggc tagtatagac       360
     gagagaagga atttgggcga aaatatggct caatccgacg ttgataccat ttacaaatcg       420
     cttaggttag taccagaatt tgacgggaat ccgcatattc tgacacgatt tataaatttg       480
     tgtgatcagt taattttggc acattttaaa accgaaccag ggcatgaatt aaccaactta       540
     gccttattaa acggtatttt aaataaaatc actggatccg cagctaggct tattaactcg       600
     aacggcatac ctgagaattg gaacggtatc aggagtgcat taattaataa ttttgctgac       660
     catcgtgacg agactgctct atacagtgat ttgtcgttac aaacccaggg gtctagtact       720
     cctcaagaat tttatgaaag gtgtcaaaat ctttttagca ccattatgac ttatatttca       780
     ttacacgagt cgattggcac tactatagag gcaaaaaggg tgctttatca aaaactcacc       840
     cttcaagctt atttgcgagg tttgaaagat ccattagggt ataggatacg ttgcatgagg       900
     ccggaaacaa tggagaaggc tctcgaattt gtgcaagacg agcttaacac attatatctc       960
     caacaaagaa atgaggggag gttcaaataa aaaagattgg caaccatccc ctactcataa      1020
     tttaccgtta aataatttta ttccaaaatc cactccattt aatacacctt ttagacaacc      1080
     aattgttaat ttgccgggtc catcacgtca gcctcaaata tatcagtcaa tgcaagggtg      1140
     gaaacctaac atgcaacccc atacgcaaac accacgtggg ctcacgcgta ctcaacagat      1200
     gatgcgcgct cctccacaaa attacaaccc ccaaagtaat gtgttcaaat tacctaataa      1260
     gcctcaaccg caaagatcat ttaattttgg aaacacacca cgcccgatga gcggtgtaag      1320
     tcatttcgtt ccaaagtttt accaccaacc ggacacgatt ggatgaaaca tggtaatcca      1380
     ccacccagta attattttaa aacgcgcgaa ctgaatttta atgaatttga taactacgcg      1440
     gattactatg attatgatta tggttatacg gactatgatc agcaattcta tggatatgat      1500
     cagtatagtg aatattgcta cccagaacag tatagttatt ccgaaactcc gatagtagag      1560
     gaggtagaac catctgatga acattcaaaa aacgaaaatt ttcagaagga ggtaaaatta      1620
     gaaaagccaa aatagaagtt aactttcata tccaaaggca attaggttac atagaaatat      1680
     ctaacccgcc gcttaaattt ttaattgata ctggggctaa tcaatcattt ataagtcccg      1740
     aaagtgtaag aaaatatttc cgtcatattc cattgaatta cgatccattc gaggtgacga      1800
     atgtacacgc caccagcaaa aatgattatt caatcacttt gccatgcttc ccggaattta      1860
     atgagcggtg taatataact ctttatgtgt ataagtttca taattacttc gacggactgt      1920
     taggttttga tttactagac gtctgggatt cgaatataga tttaaagaat aaattattaa      1980
     taacgcgtaa cgcacagata cctattcaga tgtatgactc tagaaacgct aatctttacg      2040
     aagatataat accagctcat tcctcgaaat tagttaaatt accgattaat tcaaaagatg      2100
     gtgaggtgtt aatcgaaaat caaatgatct gcaactgtct tgtttccgat tgctttacta      2160
     atgtaactaa cagtcgtgga tgggtagaaa ttattaaccc ttcatctaac gatataatct      2220
     tctctatgga tcgtcctgtc gaagccgatt tgtttaatat tgaaaccgag tgtactccaa      2280
     tttcatcgta tcgcgttaat gaggtattat cacgcctacg gaccgatcac ctaaatccgg      2340
     aggaatgtga aaattatgct gatgtctttt tttatcttga gggtgaacct ctaacgttca      2400
     taaacaagat caagcataaa atacgaacaa ccgacgaaat tccagtacac acgaaaagct      2460
     atagatatcc ttatattcac cgacaagagg tcagagatca aattcaaaaa atgcttgaac      2520
     aaaatatcat aagaccctca gactcaggtt ggagctcacc tatttggata gtacccaaaa      2580
     ggcagatgct tcaggagaaa ttaaatggcg tcttgtcgtt gattttagga aagttaatga      2640
     gaaaacgatt gatgacaaat accccatacc gaatattaca gatgtgcttg ataaactcgg      2700
     aaaatgtcaa tactttacca ctctcgattt ggccagcgga ttctatcagg tcgaaatgga      2760
     ccccgctgat attcataaaa cagcatttaa tgtagaaaat gggcactatg agttcttacg      2820
     catgcccatg ggtctaaaga actctccgtc aactttccaa agagtcatgg accatgtttt      2880
     aaaagatctg cagaatactg tatgcttggt ttatctagac gacataatcg ttttcagtac      2940
     atcccttcag ggagcatatc ataaatttag aaaaggtgtt caagaaatta cgcgaatcga      3000
     atttcaaaat tcaaatgaac aaatctgaat ttcttaaatt ggagaccgaa tttctcggac      3060
     acgtaatctc cactgatggt gtaaaaccta atcctaataa aattaaagct atagaaaatt      3120
     accctttgcc taaaacaact acggaaatca aacgttttct cggattactt ggctattaca      3180
     gaaagtttat tcctaatttt gcacgtgtaa ctaaaccatt aacacaatgt ttaaaaaagg      3240
     gttcgaaaat taaactcgat gaaaattata ttaattgctt tgaacactgt aaaacattgt      3300
     taactaacga tcccattttg caataccccg atttcacaaa agaattctta ttaaccaccg      3360
     atgcatctaa cgttgctata ggagcagtgt tgtcccaagg cccaataggc tcggataaac      3420
     caattgccta tgcatctaga actttgaatt ccagtgaatg taactatagt accatagaaa      3480
     agaactttta gcaatagtgt gggcgacaaa atattttaga ccctacctat ttggcagaaa      3540
     gttcaaaatt attaccgacc ataaaccctt gcagtgggtt atgaatttaa aagagcctaa      3600
     ttcgcgactt actcgctggc gattaaaact cagcgaatat gacttcacag ttgtatataa      3660
     gcagggtaaa cataatacca acgccgatgc cctttcgcga attgaattaa ataatgaaga      3720
     acttttatcc atattagcta atgcatctga aaggtccccc aatttagatg attctagaac      3780
     catcacagcc acagagcagg atgacaattc tagaacagcc accgcgcata ccgccaatga      3840
     gaaccccata ttagaaatac ctatttcaga tgacccttta aataaattta ctaaacaatt      3900
     aattttcaat atagttggcg acattaaagg taggcccatc gtaacaaaac catttgaaac      3960
     tcatactcga atttccatcc aactttctga gttcaactta gaagaggacg ttattaacgc      4020
     cattaaagag tacgttcatc ccaaaattaa aactggttta ctcatcaatc cgcatttagc      4080
     catgtatcag atcataccca tcatacaaaa aacatttaaa aattccgcta tgaacataac      4140
     actaaccaaa agggaagtag aaaatgttaa ggaatatctt aggcagcagg aaattataag      4200
     taagtaccac gaaggaaaac taaccatcgg ggcattaacg aatgtttcct tgccttgacc      4260
     catagatatt actggccgaa aatgagagag catatcacta aatttataaa cgaatgcacc      4320
     atatgtggcc aagcaaagta tgatcgcaac ccaattaaac agcagtttca agtcgttccg      4380
     cctgccagta ggccctttga gttgattcac ttggacgtgc ttactattca taatgaaaaa      4440
     ttctaaccat tgtagatgct ttttccaaat atgcacaagc ttactactta agggatggaa      4500
     ccgccatcag agtattacaa gcattactaa ccttttgcac ccatcatggc ataccaatca      4560
     ctatagtcac agataacggg acggagttta ctaaccagct aattgcagaa tttgtcagag      4620
     ttcataaaat ccagcatcat agagtagcgc cacacgcacc aaacgaaaat ggcatagttg      4680
     aacgatttca ttccaccata ttagaacatc ttcgtatttt aaaattaaga caaaaatccg      4740
     aatctattat aaatcttatg ccttatgccc ttttggccta taatagtagc atacatagct      4800
     ttacaaaatg taaaccgttg gaagtaataa cgggtcattt tgatccacgt gatccctttg      4860
     acatagatct tacctctcac ttgttacaac agtatatgac caatcataga gaacggatga      4920
     cccaagccta taatgttatg cacgaattgg gtaacgattc tcgccaaaat ttaacgagca      4980
     atagaaataa aaatagagac cgaagtcggg tattctcctg agcaacaaat ttatattaaa      5040
     aatccattcg ctgcacgtca gaaattagcg cctcgttaca ctcaggatgt agtaatggcc      5100
     gatcttccta tccatattta tactcgaaag aaaaaggggc ctgttgcaaa gacaagaggc      5160
     tcaagagagt gcctaaaagc gccaaattgt tgcaggatgt tcctggtcat tcatcttctt      5220
     ctgacgccag ccctgacaca agagataaaa cttgaaaatc ttgatgacgg gcctggaatt      5280
     ttacctttta aattaggtcc cgcaaaagtt atttcgcatt accactgttt ccttcagaat      5340
     gttaatttac aagaccttaa gagcaagatc atgtcagtcc acaatcaaat agatagcatt      5400
     aggcccgaac tcaacaataa aacgaattca ttattcgaac cacatttggt ttacctcaag      5460
     aataagcttg tcagtgtgtc aaggaacaat tcagagacat ttgaaacaaa tcgtgtcaag      5520
     agagggctcg tagatggtct cgggtccata gttaaaagta ttaccggtaa cttagaccat      5580
     acagacgcat tgtactataa taatgctatt aaaacccttc aggaaaatga gaacaaatta      5640
     gtgtcggaac tcaatagtca cattagtata tcaaaggatt ggagtaatca atacacaaaa      5700
     atcatagaca gtattgtaga aaaccagcat aaaaattaga gattttttag ttaacagaat      5760
     taatcaaagt gaggctacta gagattacga tttaataaaa tatgcacatt tggctcaagt      5820
     attcttgata ttcagcgata acgtagattc aatctcccaa gaattaataa ggttacaaaa      5880
     tgtattagct tttataaaga cgtccactat gcatcattca gttttaaatt taaatgcgat      5940
     acgtgctatt ataagcaagt taatcatttt atatggcaga gatagaatag ttgatttaga      6000
     aataagagaa tactatgatt taattaagat aggttccgta ttacgtaggc aacagaaata      6060
     accatagtat ataaattccc cattgttttg acctctacat atgatatata taaattatcc      6120
     attgttccta atagaaatca cgaagttata tcccctcctt atccatttct ggtccttaat      6180
     gagaaagatt tcaagtacat agaggctgaa tgcccgaagt ccagtaaatg gtatatatgc      6240
     gaagaggaac gcagcctgcg aagtcgccca tcaaagggat tgcatccatc aactcatcac      6300
     cacgcagcag aaaaccgaag cctgtaaccc cgtcatggtt tcattagaaa actccgcgta      6360
     cgaggaattg gacgagaaac actacgcaat cagtcttcct gcaaccacga aagtacactt      6420
     ttcctgcgaa caagactctt ataagacact tcaaggcagt tatcttgcaa taattccgca      6480
     acattgttac ctggaaacgc ctgatttcac catttcgaat gacaataatc gcctaaaagg      6540
     actaccactg aaaataatgg atctgcccga aatataacgc cgctgttcaa gttgccacac      6600
     cagagataaa attgaaatca ataaatttaa accatttaca taccgcaaca tcaagaatgt      6660
     ccctacaatc agcagtaaaa ttgaacaact ctgaaaacca catactgttc cacactacaa      6720
     tccctatgta cgtggttata ttaagtgcat gtgcactcat tagtggcata ctttatcgca      6780
     agtatcgaat gaaacaagca aaggcgtcaa cggaaacttc cgaacgagga caacctgatc      6840
     ttcatggagt ctacgcgtgt ccagcggaca gaagggttga ccctaatcaa ccccagctca      6900
     atttacgaca aaagtcttca atagtcgctg ttcttcgggg agg                        6943
//
ID   Gypsy-49_MSe-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-273
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 975-975 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TSDs are not certain.
XX
SQ   Sequence 273 BP; 79 A; 63 C; 46 G; 85 T; 0 other;
     tgttacgcat agctaatata tggaaagcgc tacgcatgca tcgccccata aacacaagaa        60
     gctacacgtg ttgcaccgtc agcagaacgt gaccaccatt gacgtcaatc ggagggcaca       120
     tgaaaccgtc gtagcaaccg cgccgcattc ttggtccaac atcgatcaat tatcaaccta       180
     ttttaattag taataatttc ttatattgta attttccatt tataattaaa tttcttattt       240
     taattttgtt tttgcgacct ccggctgtga act                                    273
//
ID   Gypsy-49_SiCu-I repbase;    DNA;    INV; 4365 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4365
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5070-5070 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..4363
FT                 /product="Gypsy-49_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSAEEDPGGQPTNQEILKALSDFTSALAAQAKNSGSV
FT                 PVPPALRCLQIPQLAAPHQLSLPEFLDWGQRWEDYSNANQLASHPPSTQQS
FT                 ILRSALHQDWTMLWSSGRLPIKGTATANDAVTEIGAYLRQKRNPILDRQAF
FT                 HRRDQSPGESVDHYYATLKLLDEASAHQTSTTCPSCNITVHEPACSGCHAI
FT                 LNLTQQQQDIRIRDRLICGLYNKEIQRRVLTEQFSSDLTLEKVLRICVAME
FT                 TSTEFERSLATPTHEANATSGYKRKQVHGDDKTRTNKMRRPDPSKPCYWCG
FT                 ATPSHERSRCPASGQTCNLCGVRGHFSKVCRKGPQAVNSEANEILPPPPPP
FT                 TSFTTNTVMVGGIQKLLQVGTVINGVQYSIPWLADSGAGADLLPERDFNRL
FT                 PTAAKSSLLPDTINCVGANGIGLQPVGSFKTTLVLHGFQYHTTVGVCRQLN
FT                 APLLSKQGCIALGLLPPDWPHCMLDPRQYAISTGNATIQPPVTNSHDTNAI
FT                 RASILTKFADAFNDEVLRPMQGPVMKIELTEGAVPCKRYRAYNVPFHWKDQ
FT                 VKSQLDSMVIKGVVEKVPVGEPIDWCHPMVVVPKKGTSEPRITVDLTGLNK
FT                 YVRRPAYPVRVPREVVARIPPGMKFFTTLDARHGYWQVPLDPDSRALTTFI
FT                 TPWGCYRYCRNVMGLISAGDEHNRRGDEALQGISNVEKVVEDVLIFDADLD
FT                 THVRRVEQVIQRCQEAGITLNAKKFNFAAGETDWCGFHISPSGYTPAPHLY
FT                 SALSNFPIPTNKTDVRSFNGLIQQFEAFSHRITELSSPIRSLLSSKAAFVW
FT                 EEPHQRAFQEVIKELCSHRVLAQFQPNQPLRLETDAAQSKGLGYALYQQQK
FT                 DGSWRPLQVGSRYVTAAESRYSATEIEMLAVVWATRKCKLYLMGAPFELVV
FT                 DHRPLIPIINSKTLDELDNNRLIRFKEKLASHLITAVWRAGAKHTVVDVFS
FT                 RFPSENPDEEDLQLDPDADPETLIAAAVHDPDDGSRILTDPILQSLRSNAQ
FT                 QDSEYRRLQEAIKRKIIRKEELDEDLRPFWKVLPRLTINEDLIMLGSRLLI
FT                 PLLLRPSVLNTLHASHQGRNRTLRRARQSVFWPGITNDIRNVVTSCSECMS
FT                 FLPSQQKEPLVSDPPPSYPFQQVGVDLFSHAGREYLVMVDRYSGWPTVAKC
FT                 GHSADSSTVIRQLRQWMADLGIPEKLVSDNGPQFSSQEFQQWARRWNIVHS
FT                 TSSPHYPQSNGLAESGVKALKYLLAKSTVNGDLTSEAFQEGLMELRNTPRE
FT                 DGQSPAQLLFGAPTRTQLPLHRSRFTDQWKSRAHDSDQKATQLREKARQRY
FT                 NAAAKPLSTLQVGDVVKVQDHQTKRWNLLAEILEAHPRRRSYLLRTESGRT
FT                 LRRNRRFLRPFKASPEKDEEDTKTRDPPLRRSSRQRKPPARFTNAVVTRSF
FT                 PSHDLKGG"
XX
SQ   Sequence 4365 BP; 1111 A; 1406 C; 1045 G; 803 T; 0 other;
     tggcgcagtc gacaattgat tttttagcgt tttgcaactc taaaaatcgt aaataatagt        60
     gaatcagtgc tcagtgtgct agtgaaccca taccaccatg tcggcggagg aggacccggg       120
     tggacagccc accaatcaag aaatcctcaa ggccctcagc gatttcacca gcgccctcgc       180
     cgcacaagca aaaaacagcg ggtctgtacc agtaccccca gcgttacgat gcctgcagat       240
     ccctcaacta gcggcaccac atcaactctc gctccccgaa tttttggatt ggggccaacg       300
     atgggaggat tactccaacg ccaaccaact ggcaagccat cccccatcaa cacaacaaag       360
     tatcctgagg tcagcactcc accaggactg gaccatgctc tggtcctcag gccgcctccc       420
     tatcaaaggg accgcaacag caaacgacgc tgtcaccgag atcggagcat acctccgcca       480
     aaaaaggaac cctatcctgg atcgccaggc cttccacagg cgagatcagt caccagggga       540
     gtcagtggac cactactacg ccaccctaaa acttctcgac gaagcctcgg cccatcagac       600
     cagcacgaca tgcccatcct gcaacattac cgtgcacgaa cccgcttgtt ccggctgcca       660
     cgcgatcctt aacctgactc aacagcagca ggacatccgc atccgtgacc gcctcatctg       720
     cggtctttac aacaaggaga tccagcgtag agtacttacc gagcagttct cctccgatct       780
     caccttggaa aaggtcctcc gcatttgtgt ggcgatggag acttccactg agtttgagag       840
     aagcctagcc acccctaccc acgaggcaaa cgccacttcc ggttacaaac ggaagcaagt       900
     gcacggcgac gacaagacca ggaccaacaa gatgagacgc ccagacccat ccaaaccatg       960
     ctactggtgc ggagcgacgc caagccacga gagatcaagg tgcccagcgt ccgggcaaac      1020
     ttgtaacctg tgcggtgtga ggggacactt cagcaaggtg tgcagaaagg gcccacaagc      1080
     agtcaactct gaagccaacg agatcctccc tcccccgccc ccacctacat cattcaccac      1140
     caacaccgtc atggtcggtg ggatacagaa actcctccaa gtgggcaccg tcatcaatgg      1200
     agttcagtac agtattccgt ggctcgcgga ctcaggggcc ggcgcagatc tcctacctga      1260
     acgagacttt aaccgcctcc caacagcagc aaaatccagc ctactccccg acaccatcaa      1320
     ttgtgtgggc gctaacggta tcggtctaca accagtggga tccttcaaga ccaccttagt      1380
     actccatggc ttccagtacc acactactgt aggagtgtgc cgccaactca atgctcctct      1440
     cctcagcaaa cagggctgca ttgcactcgg cctccttcct ccagactggc cccactgcat      1500
     gctagaccct cgccaatacg ccatctccac tggaaacgcc accatccagc ccccagtaac      1560
     caatagccac gacaccaacg ccatcagggc gtccatcctc acgaagttcg ctgacgcttt      1620
     caacgacgaa gtgctgcgac caatgcaggg accggtgatg aaaattgagc taacagaagg      1680
     cgccgtcccg tgcaaacgct atcgggcgta caacgtgccg ttccattgga aggatcaggt      1740
     gaagtcgcag ctcgattcca tggttatcaa aggagtagtg gaaaaagttc cagtgggtga      1800
     gcccattgac tggtgccacc caatggtcgt cgtgcccaaa aaggggacat cagagcctcg      1860
     gattacagta gacctaaccg gtcttaacaa atacgtccgg cgtccggcgt acccagtccg      1920
     cgttccccgc gaagttgtcg cccgaatccc cccaggaatg aaattcttca ctacactcga      1980
     cgcccggcac gggtactggc aagttcctct agatccggac agccgcgcac taacgacctt      2040
     catcacgccc tggggctgct accgctattg ccgcaacgtc atgggcttaa tctccgccgg      2100
     cgacgagcac aaccgccgag gggacgaagc gctgcaggga atctccaacg ttgaaaaggt      2160
     ggtggaagac gtcctcatct ttgatgctga cctcgatacc cacgtcaggc gagtggagca      2220
     ggtgatccaa cgttgccagg aggctggaat cacccttaat gccaagaagt tcaactttgc      2280
     cgcaggagag actgactggt gcgggtttca catcagtccc tcggggtaca cacctgcccc      2340
     tcatctctac tccgccctct ccaactttcc catccctacc aacaaaactg acgtgaggtc      2400
     cttcaacgga ctcatacagc agttcgaggc attctctcac cgcatcaccg agctcagctc      2460
     ccccatccga tccctcctct catcaaaagc tgcattcgtg tgggaagagc ctcatcagcg      2520
     ggcgtttcag gaggtcatca aggagttatg cagtcaccga gtcctcgccc agtttcagcc      2580
     aaaccagcca ttacgattag agaccgacgc agcgcagtcg aagggactcg gatatgcact      2640
     ttatcagcag caaaaggatg gctcatggag acccctgcaa gttggctccc gctacgtcac      2700
     cgcagccgag tcaagatata gcgccaccga gattgaaatg ctggcggtgg tttgggccac      2760
     ccggaagtgc aaattatatt tgatgggcgc ccccttcgag ctcgtagtag accaccgacc      2820
     cctcatccca atcattaact caaagacgct ggatgagcta gacaacaacc ggctgatccg      2880
     gttcaaagag aagctggcat cccacctcat caccgcagtt tggcgcgccg gagcaaaaca      2940
     caccgtcgtg gatgtgtttt caaggttccc atctgaaaac ccagacgagg aggacctgca      3000
     gctcgacccc gacgccgacc cagaaacgct tatagcagcg gcagtgcacg acccagatga      3060
     tggaagcaga attctcaccg acccaatact tcagtctctc cgaagcaacg cccagcaaga      3120
     cagcgagtac cgccgcctcc aagaagccat taaacgcaaa atcatccgca aggaagagct      3180
     cgacgaagac ctgcgtccat tttggaaagt gctccctcgc cttactatca acgaggatct      3240
     cattatgctg ggtagccgtc tcctcatccc cctcctgcta cgacctagcg ttctcaatac      3300
     actccacgct tcgcatcaag gtaggaaccg taccctacgt cgtgcccggc agtcagtctt      3360
     ttggccagga atcaccaacg acatccgcaa tgttgtcacc tcgtgcagcg agtgcatgag      3420
     tttcctccct tcacagcaaa aggagcccct cgtctccgac ccaccaccat cgtacccgtt      3480
     ccagcaagtt ggcgtggact tgttttccca cgcaggacga gagtacctag tgatggtgga      3540
     ccggtactcc ggctggccaa cagttgccaa gtgcggccac tcagcagact ccagcactgt      3600
     catccgacag ctgcgtcagt ggatggcaga cctcgggatt ccagagaagc ttgtgagcga      3660
     caatggaccg cagttctctt cccaagagtt ccagcagtgg gctcggcgat ggaacatcgt      3720
     ccatagtaca tcctcgcccc attaccctca atcaaatggg ctagcggaat ccggagtaaa      3780
     ggccctgaag tacctcctcg ccaagtccac cgtcaatgga gatcttacct cagaagcatt      3840
     ccaagagggt ctgatggaac tcaggaatac tccccgagaa gacgggcaaa gccccgccca      3900
     gttgctcttt ggcgcaccaa cgcgcaccca acttcccctg caccgaagtc gctttactga      3960
     ccagtggaag tctcgagccc acgacagcga ccaaaaggcg acccaactac gggaaaaagc      4020
     aaggcagagg tacaacgcag cggctaagcc attatcgact ctgcaagtag gtgacgtagt      4080
     caaggtccaa gaccaccaga caaaacgttg gaacctgctc gccgaaattt tggaagcaca      4140
     tccgcggcgc cgcagctacc tcctccgcac cgaatcaggg agaactttga ggagaaatcg      4200
     ccgtttcctt cgacccttca aagcatcacc agaaaaggac gaagaggaca cgaagacacg      4260
     cgatccgcct ctcaggagat ccagtcgcca acgcaaaccg ccagcccggt tcactaacgc      4320
     cgtcgttacc cgatcgttcc ccagtcacga tctcaaggga gggca                      4365
//
ID   Gypsy-49_SiCu-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-295
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5126-5126 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 295 BP; 89 A; 78 C; 54 G; 74 T; 0 other;
     tgaggggtta ggtatcacta taccccaatc aacccggcgg gctccatgcc ggactgacga        60
     ccagcaaccg acaaccgaac attccagagt gcagcagagc aagtagaagg aagccaagca       120
     agcatgatca cacttgcagc cagctcactt attattctat tcttttctct cgtcttgtga       180
     ctccctaaga gcagacgtaa tctctcctta cttaatcgaa taaaactaaa ttataataat       240
     taactttccg cttcaagcgt actcattaat tattgaccca agtggtgcca tgaca            295
//
ID   Gypsy-49_SpEx-I repbase;    DNA;    INV; 6053 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6053
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4117-4117 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1038..2252
FT                 /product="Gypsy-49_SpEx-I_1p"
FT                 /translation="MISELESYGAELKKIKVYLIKIGPARREGTISKVKFS
FT                 EAQELYDRFSNYLITVESDLKSGKIKGQDISLVETAVERINVLYNDIVKLC
FT                 NVEELIVLSKPETKMSTITFDLKTALNLLPVLTNEETVTKQLIDNIEYYDS
FT                 ILSTPECKQNLIKFVLKSRLSQAAKLKLKTTYSSVSSLVQDMRSELLPKKA
FT                 ATAIQTKLQKIRQHEKSISNYGEEINELFVDLTISQANGDTKCYEILKPIN
FT                 EKLAIKQFADGLRNRKLSTIISARNYDSLKDAIQAAQDEEVSSASTSGEIF
FT                 GTYKKPYYNYNYRGRGHNSRSFHNGYFVRGNSGPYANRVQGNYDRQRGSTR
FT                 VFSYRGQRSPARARRGTFYRSRGNSARRQNTVNVFEESNNDTQNNNLEMSQ
FT                 QQSSSNRFFLD"
FT   CDS           2164..5871
FT                 /product="Gypsy-49_SpEx-I_2p"
FT                 /translation="MYLRNRITILKIITWRCLNNKVRQIGFFLINQRHILV
FT                 SNSNSYVNILSTHNKSFSYLVDTGASLSACKYKQAIELHIPIHKENTIING
FT                 LGGQIQSIGYVYIPLYLGTQRVKHKFHVFKTLPIQSTAILGRDFLSKYKAK
FT                 LDFQNGNMIIKTNIEQGICFPFTSHCRDAICIPKRSESIHYIQTDLKEECV
FT                 VCSQELLNGIYLAGTIVNPINGVIPVRILNVTENDLLLSDINPSFQKLNDY
FT                 QVCTFDKTSKNADRVKTLFSKINFEHLNTEERITIENLCAKYADIFYLPDD
FT                 KLSTTDIYTHTITLKPDTKPIFSKPYRIPQTQKQEVKAQIDKMLKEGIIEP
FT                 SKSDWSSPVLLVPKKLDCNNQNQWRLVIDYRKLNNCIENDNFPLPDITEIL
FT                 DALSGSIYFSHLDLHQGFYNVQLSKESRKYTAFSSGQYQMTRMPMGLKTSP
FT                 SSFSRMMNIALAGLNYDKCLIYLDDLIIFGRSLEIHNRNLQDVFERLRKVN
FT                 LKLNPIKCDFLKKQILYLGHVISNEGILPDPQKIDVVKKYPCPKNPDEVKR
FT                 FVAFTNYYRKFIKNFAKIAKPLHTLCKKNVKFVWDDNCQQSFEKLKERIIS
FT                 PPVLDYPDFSVDNKFILQTDASNTAIGATLSNKNGRPVAFASRTLNKAELN
FT                 YPVIEKELLAIVWSVKYFRPYLYGRNFKIKTDHKPLVYLFNMRDPSSRLIK
FT                 FRIALEEYDFEVEYVKGSDNAAADALSRICITSSELKEMIDHINVMTRAQT
FT                 RRLVQSDPVDRVRTDLRPDQPQVVSTHIKPLGSVELRFINEDKLNEIRKLN
FT                 IMTRENKVLCYIESQCIIYIKQTSSGSQISRAEFVNELENLCAQEGIGTVS
FT                 IVKCRDNEIFIKKLVEEINKRKHKIKITLCVLNNVQTINNKDDRRVILNDF
FT                 HLLPSSGHAGMRRMSNNIKKYYYWPGLEKDVKEFLKRCDKCQRQKYSLPIK
FT                 EPMIITTTSNTAFEKIYLDIVGPLDTDNYKNTYILTLQCELTKYVEAYALQ
FT                 TKQANEVARNFVNNFILRYGVPKEIATDRGQEFMSIVFKEVCKLLHINHLS
FT                 STAYHHQSIGALEVTHKNLKTFLRIQTDNNPETWSQWLPFWCFGYNTTVHS
FT                 ETKFTPYELVFGKVCNLPSNLINTVEPLYNFDDYPCELRYRLQTSQKQARD
FT                 NLLNSKIKRKIAYDKYVNPIVYKPKDLILIKNDSGNKMDAVYSGPYQVVND
FT                 ITPNVQIIRNGKIDTIHKNRTKLYHK"
XX
SQ   Sequence 6053 BP; 2262 A; 954 C; 1076 G; 1761 T; 0 other;
     tggcgaccct gccatcgctt gaagtgagaa ttcgatactc ttctccataa aaggactgga        60
     atgttttata gtgctcgaac gttctgtcac tgtgaagatg tcacgagtgt tattttataa       120
     tcctgttatt acgcacgggt ggtctacaat cacatattac gaaaatggga aaaggtcaat       180
     ctaaatccaa agaaactgtc gttgtccaga acacggttgg aggaagtaat atagccacgt       240
     tggaagaatt tcggtaccat ttaacaacta caaacatact gttgctgata atcgttttgg       300
     gcgttctttt ggcagttttg tgcgtggcct ataggatgta taaaagatgc catctggatt       360
     ggataacgcg cgaaataaat agcaatatgt taagaagatc actcgtaagg cgccaagctg       420
     tgacaccaaa aggagattgt gaagctgtgt agcgacgcag cacgaccccg cagcataaca       480
     ctacaaccac gttcaataat tcaagttgtt aacgttcaat actattgatg gagaaagtaa       540
     tatttggata ttgccacaat tcgcaatacc ttcatgaaaa aaaaaaacag tgacaaggaa       600
     ggaaggagat ttcaaaacta cttccaaatg taatcgtcgg atatcagaaa acactgttgg       660
     atttacattt tggactttgg actttatatt cttatcgtcg taatatttca gaagaagtta       720
     tagctacaga tatgaactga acgagtgtag tgagtatgtg aaagtgaaaa gtgaaatagt       780
     gttttagaaa tacctacacg taagtaaaaa gtaatcaact gtgtcagggt tatgtcaagg       840
     ggactaagcg tttacgtatt gtttattagt tataacaatt aaggcatgta tcctattata       900
     tcaaaaataa ttacacttta gtgtacattt aatcgtattt aatggtttat aaaagggtca       960
     taactaaact agttatttag tagaaatatt ttgtttagat ggtttagtat tctagtaatt      1020
     caatattatt aatattaatg atttctgaat tagaatcata tggggcagaa cttaagaaaa      1080
     tcaaagttta tctgataaag ataggacccg ctagaagaga aggtactatt tcaaaagtta      1140
     aatttagtga agcccaagaa ctttatgaca gatttagtaa ttatttaata actgttgagt      1200
     ctgatttgaa gtcgggtaaa ataaaaggtc aggacatttc cttagttgaa actgctgttg      1260
     aaagaattaa tgtattatat aacgatatag taaaattgtg caacgtagag gaacttattg      1320
     tgttatcaaa accagaaaca aaaatgtcta ctattacttt cgatttgaaa actgctttaa      1380
     atttattgcc tgtattgaca aatgaagaga ctgttacgaa acagctcatt gataatatag      1440
     aatactatga ttctattctt tctacgccgg aatgtaaaca aaatttaatt aagtttgtgc      1500
     taaagagtag attgtctcaa gctgccaaac tgaagttaaa aacaacctat tcgagtgtat      1560
     caagtttggt gcaagatatg cgatcagaat tgctaccaaa aaaagcagca accgcgatac      1620
     agactaaatt gcaaaaaata cgacaacatg aaaaatcaat atcgaattac ggagaggaaa      1680
     ttaatgaact atttgtagac cttacgattt cccaagccaa cggagacacg aaatgttatg      1740
     agatattgaa gcctataaac gaaaagttag ctattaaaca atttgcggat ggcttgcgaa      1800
     atcgaaagtt aagcactata atttcagccc gtaactatga ctcgctcaag gacgcgatac      1860
     aggccgccca ggacgaggag gtgtcaagtg catctacatc gggagaaata tttggtacgt      1920
     acaaaaaacc ttattataat tataattata gaggccgagg acacaattcc agaagttttc      1980
     acaatggata ttttgttaga ggcaacagcg ggccgtatgc aaatagagtt caaggtaact      2040
     atgaccgtca gcgaggttca acacgtgtgt tctcatacag gggtcaaagg tcgcccgcgc      2100
     gcgctcgcag aggtactttt tacagatcca ggggtaattc agcgcgccgt caaaatacag      2160
     taaatgtatt tgaggaatcg aataacgata ctcaaaataa taacttggag atgtctcaac      2220
     aacaaagttc gtcaaatcgg ttttttcttg attaatcagc ggcacatatt agttagcaac      2280
     agcaatagtt acgtaaacat tctatctaca cataacaaat cattttctta tttagtagac      2340
     actggcgcat cactctccgc atgcaagtat aaacaagcta tcgagctaca cattccaatc      2400
     cataaagaga atacaattat aaatggattg ggtggacaaa tacagtcgat tggatatgtt      2460
     tacatacctc tttatttggg tacacagaga gtcaaacata agtttcatgt tttcaaaact      2520
     ttgccaatac agtcaacagc aattctaggt agagactttt taagtaaata caaagcaaaa      2580
     ttagattttc aaaatggtaa catgattata aaaactaata ttgaacaagg aatatgtttc      2640
     ccttttacgt cacattgtag agatgcgata tgcattccca agcgttcgga gtcgatacac      2700
     tatatacaga cagatttgaa agaggagtgt gtagtttgct cacaagagtt actgaatggt      2760
     atctacttgg caggtactat tgtaaaccca ataaatggtg tcataccagt tagaatcttg      2820
     aatgtcactg aaaatgattt gttattgtca gatattaatc catcttttca aaaacttaat      2880
     gactatcagg tttgtacatt tgataagact tctaaaaacg cggaccgggt taagacattg      2940
     ttttctaaaa taaactttga acatttaaat acagaagagc gtataactat tgagaactta      3000
     tgtgcaaaat atgctgacat tttctatttg ccagatgaca aacttagtac cacggacatt      3060
     tatacacata cgattacctt aaaaccggat acaaagccca tattttcaaa gccatacaga      3120
     atacctcaaa cgcaaaagca agaagtaaaa gctcaaatag ataaaatgtt aaaagaaggc      3180
     ataatcgagc ctagcaaaag tgactggtcg agtcctgttt tacttgttcc caaaaagtta      3240
     gattgcaata atcagaacca gtggcgtctt gtaattgact atcgtaaatt aaacaattgt      3300
     attgaaaacg ataactttcc attaccggac attacggaaa tattagatgc attatctggc      3360
     agtatttatt tctcacattt agatttacac caaggttttt ataatgttca gttaagtaaa      3420
     gaaagcagga aatatacagc cttttcatca ggacaatacc agatgaccag aatgcccatg      3480
     gggttgaaaa caagccctag ttccttctct aggatgatga acattgctct ggctggtcta      3540
     aattatgaca aatgtttaat ttatttagat gatcttataa tatttggcag aagtttagaa      3600
     atacacaata gaaatttaca ggacgtattt gaaagattaa gaaaggttaa cctaaaattg      3660
     aacccaatta aatgtgattt tctaaaaaaa caaatattat atcttggaca cgttatttca      3720
     aatgaaggaa tactaccaga ccctcaaaag atagatgttg taaaaaaata tccttgtcct      3780
     aaaaatcctg atgaagtcaa aagattcgta gcgttcacta actactacag gaaatttata      3840
     aaaaactttg ctaaaattgc aaaaccttta catacacttt gtaaaaaaaa tgtaaaattt      3900
     gtttgggatg ataattgtca acaatctttc gaaaaattaa aagaacgtat tatatcgcca      3960
     ccagttcttg attatccaga tttcagtgta gacaacaaat ttattcttca aacagatgcc      4020
     tccaacactg ctataggagc tacattgtca aataaaaatg gtcgaccagt agctttcgct      4080
     agtagaacac taaataaggc agaactaaat tatccagtaa tcgagaaaga gcttctagcg      4140
     attgtatgga gtgtcaaata tttccgtccg tatttatatg gtcgtaattt taaaataaaa      4200
     acggatcata agccgttagt atatcttttt aatatgaggg atccttctag cagattaatc      4260
     aagtttagga ttgccttaga agaatatgac tttgaagtag aatacgtgaa aggttcggac      4320
     aacgcggctg cagacgcatt gtctcgaata tgtataactt cttcagagtt aaaggaaatg      4380
     attgaccaca taaatgtaat gacacgtgct caaacaagaa gacttgttca gagtgaccca      4440
     gttgataggg tacgaactga cttgaggcct gatcaaccac aagttgttag tactcatatc      4500
     aaaccgctgg gatcggtaga actaagattt ataaatgaag ataaattaaa tgaaataaga      4560
     aaattaaata ttatgacaag agaaaataaa gttttatgct atatagaaag tcaatgtata      4620
     atatatataa aacaaactag ttcaggatca cagatttcgc gagccgaatt tgtgaatgaa      4680
     ttagaaaact tgtgcgcaca agaaggaata ggtacagtta gtattgtaaa atgtcgcgac      4740
     aatgagatat ttattaaaaa acttgtagaa gaaataaata aaagaaagca taaaattaaa      4800
     attactttat gtgttttaaa taatgtacaa acaataaaca ataaagacga cagaagagta      4860
     atacttaatg actttcatct cctacccagt agtggccatg ctggcatgag acgaatgtca      4920
     aacaatatta aaaaatatta ctactggcca ggtcttgaaa aagatgtcaa agaattttta      4980
     aaacgatgcg ataaatgtca acgacaaaaa tattcgttac cgattaaaga gcctatgata      5040
     ataactacaa cttcgaatac agcatttgaa aaaatatatt tagacatagt aggaccttta      5100
     gacacagata attataaaaa tacgtacata ctaacacttc agtgtgaact aacaaaatac      5160
     gtggaagcat atgccttaca aacaaaacaa gccaatgaag tagcaagaaa ctttgttaat      5220
     aattttattc tcagatatgg ggttccaaag gaaatagcca cagatcgagg tcaggagttc      5280
     atgtcaatag tattcaaaga ggtttgtaaa ttactacata ttaatcacct tagctcaacg      5340
     gcgtatcatc accagtccat cggagctctg gaggtaacac acaaaaattt aaaaactttt      5400
     ctacgtatcc agacagataa taacccagag acttggagcc aatggttacc attttggtgt      5460
     tttggatata acacaacagt tcattcagaa actaaattca cgccttacga gttagtattt      5520
     ggaaaagttt gtaatttacc cagtaattta attaatacag tcgagccatt atacaacttt      5580
     gatgattatc cttgcgaact aaggtatcgg ttacaaacgt cacaaaaaca agccagagac      5640
     aatctactca acagcaaaat aaagagaaaa attgcatatg ataaatatgt caacccaata      5700
     gtatataagc caaaagattt aatattaatt aaaaatgata gtggtaataa aatggatgca      5760
     gtgtattcgg gaccatacca agttgtaaac gatataacac ctaatgtaca aattataagg      5820
     aatggtaaaa ttgacactat acataaaaat cgtacaaaat tataccataa ataataaatg      5880
     caaatacaca agaattatat acctatattt gtgtgtaatg taattaaacc atctatgaca      5940
     tataataata taatatgttt agtggaatta tttactaata ataacaattt atttaggtta      6000
     agattaacta tgtaatcaaa caaaacattt ttttttcttt ttaaggatgg agg             6053
//
ID   Gypsy-49_SpEx-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-142
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4178-4178 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 142 BP; 45 A; 28 C; 17 G; 52 T; 0 other;
     tgtagtagta agtctatata acatattact aagtacattg tatctctata atcatgtatt        60
     taatctattg tcctaactta aataaaggca gtatcgtctc agcaattgga cctttcattt       120
     ctcgcttaac ccgaacctta ca                                                142
//
ID   Gypsy-49_TrVa-I repbase;    DNA;    INV; 4848 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4848
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 294-294 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           469..4803
FT                 /product="Gypsy-49_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MQKKLLLNYLGLEAYNILRTELLPNKPKDKSFAELID
FT                 NLKAXYEPATVKFSSIAKFEAKTQSDDESASQFIKELRILANTCQFGTTLS
FT                 ERLLIKFVNGLKSXSLKKRLWNTPDLTLEIAVNTATQEESVQAELDSVDVH
FT                 KIGHRRTNKYSKGKENFQRKFSQPTSTQPYSCHNRRQPSQPNHVTNQQSKS
FT                 SQSFNQSQPSSSQPVNPQTSKPCWRCTRRHNPNFCPVRNWKCFTCQRLGHT
FT                 SKVCARIKAIGDDNNEDSACSHVEENWIIGKISSVTXSEESNCLESSLRVN
FT                 SQQIINISNSSXPLKEFYPTNISLPSYPENISQPLSNATFIENPHHQTINQ
FT                 SSAKLVKSISESEKCQKSLVLNEISVRKINNAPYLIDISINGKSVTCEVDS
FT                 GSAVTLISLKEFKEKFQNTPVNDCQLNLKSVEGKKLSVIGETNVNVPYKGK
FT                 QHKLRLIVVQFDNPTQMLLGREWLNYLEPDWKRKLISSNKIXVVQDENSQF
FT                 VNSLKSKFPLVFTQDKSDSIKGVKARLVLKENATPIFHKYYEIPHNQRNIV
FT                 REKLETMVRDGXLTKVTHSDWAXPIWPVEKKDGDLRIVVDFRKTVNKQLKV
FT                 DHYPLPKIDEIWITLRDCKFFTVLDLSEAYLQLEVTEDSKEILTINTPWGL
FT                 FRYNRLIDGISSAPAIFQGVVDHVLLNLPKVGKYIDDIFVGGKTREECMIN
FT                 TTQTVKRLNDHHVRLNLTKSLWIREEIERLGHKLNKDGVHPTNEKINAIVN
FT                 ARPPNNVSELRAFLGLVNFYRKFLANLSSLLKPLNELLEKGQKFDWTPQRN
FT                 EAFQIVKQNISKKPVLTIYDPKYPILVYSDASPYGVGAVLCHLIEGSDKPV
FT                 MFASASLTKCQQNYSQLDREALAAIFAVKKFHAFLIGHRFKIITDSQGLKS
FT                 LFHPKRGIPVISSSRMVRWSVILSAYDYDIEYRKSTLLCPADALSRLPLEV
FT                 NVNNVIMENVNDVNVTCEILPEIAISSDLIAEETRNNPEFQQIFLFILNGW
FT                 PQAVENATLKPFFIIRNYLSLQDNCILFGDRVVIPPKLQDRVVELLHDCHP
FT                 GICRMKAIARKNVWWPTINQDIENAISKCEACQIVNFRPCTNVTSPWPKTD
FT                 HPWERVHLDYFIFQKLIFLILEDTFSKWIDVWTVTSTNADQLLHKLRIHIS
FT                 THGIMKQIITDNGPPFDSIDFVNFCVQNGIVLGKSPPYHPKSNGQIERAVQ
FT                 TVKRGLKKIIIDLRKENISCLDLSNKLANFLFNYRNTPSAATNKTPSDLIL
FT                 RQTPRTRLSLLNPKDKCKFNNLPKFEEGDKVLVKINKEVQKGEILRKLSPM
FT                 TYYVSINGATKLCHLNQLKLTLLTENKSENIEKFPCDNSVPLQPTNTFQRP
FT                 NPQHPTTSSDSNTDVGNTPKLNVDHFPAANNSGRKNPEQQTEREEINLNAD
FT                 TNADVNSQNEVVQPCVRKSTRIIKKPNKLDL"
XX
SQ   Sequence 4848 BP; 1759 A; 930 C; 807 G; 1341 T; 11 other;
     tttggcgacg aagaaaaaat tcgaaaaacg cgtccaccgc ccagccgtaa tcgaaaagaa        60
     aaaagtaagt caaccgtgtt cttttgtcaa cctatcgtca accattgtgt caaccacgtg       120
     cacttgttga aagaaaattt ccgtcaatcg tcaagaaaat gttcgttccc ggagtgtctc       180
     ggaaattaat cgaaaccttt tcaaccccat gaaaagaaat cttaccgaaa ttccaaaacc       240
     tttaatccac cgttctagtt cgtcaacctg tttctgttct gtgaccataa cacaagaaac       300
     gagcaaaacc aattaaacca ggagattacc gcaacgaatc cacccactac aaaacaaatc       360
     ggacgatttg gctccttgga atcatttgat tcaacgaaaa cttccttctc ggtatggtat       420
     gaattatttg aaaattattg tgacctcaat gatattactg acgctcaaat gcagaaaaag       480
     ttgttactca attatttagg cctagaagca tacaacattc ttcgtaccga actccttcct       540
     aataaaccaa aggataaatc gttcgcagaa ttaattgata accttaaagc gcmttatgaa       600
     ccagcaactg tcaaattttc tagtatagcg aaattcgaag caaaaactca atccgatgat       660
     gaatctgctt ctcaatttat taaagaatta agaatcctcg ctaacacctg tcaatttgga       720
     accactttaa gcgagaggtt attaataaaa tttgtaaatg gccttaagtc twcaagtttg       780
     aaaaaaaggt tatggaatac cccagatcta acgttagaaa ttgctgttaa cactgcaact       840
     caagaagaat ccgtgcaagc tgaattagac tccgtagatg tacacaaaat tggacacmgg       900
     agaactaata aatacagcaa aggwaaagaa aattttcaac ggaaattcag tcaacctaca       960
     tcaacccagc cttactcttg tcataaccgc cgtcaaccta gtcaacctaa ccatgttacc      1020
     aaccagcaat ctaaatcaag tcagtcgttc aaccaaagtc aaccaagttc aagtcaacct      1080
     gtcaacccac aaacatccaa accttgttgg aggtgcacaa ggcgtcacaa tccaaatttt      1140
     tgcccggtcc gcaactggaa atgtttcacc tgccaaagac taggacatac atccaaagtt      1200
     tgcgctcgaa tcaaagccat cggagatgac aacaatgaag attctgcctg ctcacatgtc      1260
     gaagaaaact ggatcattgg taagatctct tccgttacaa aktctgaaga aagcaactgt      1320
     ttggaatcaa gtctaagagt taacagtcaa caaatcataa atatctcaaa cagtagtcma      1380
     ccactaaaag agttctatcc tacaaacatc agtcttcctt cctatcctga aaacatcagt      1440
     caacctttgt caaacgcaac attcatcgaa aacccgcatc atcaaaccat caaccaaagt      1500
     agtgcgaagt tagtgaaaag tatctcggaa agtgaaaagt gtcaaaagtc actcgtttta      1560
     aatgaaatat cagtgcgaaa aataaataac gcgccctatt taattgatat ctcaataaac      1620
     gggaaaagtg ttacttgcga agtagattcg ggctcagctg ttacattaat ttctcttaaa      1680
     gaatttaaag aaaaatttca aaatacccct gttaacgact gtcaacttaa cctcaaaagt      1740
     gttgaaggaa agaaattgtc tgtaatagga gaaactaatg taaatgtgcc ttacaaaggt      1800
     aagcaacata aacttagatt aattgttgta caatttgata accctackca aatgctttta      1860
     ggtagagaat ggttaaatta tttagagcct gattggaaac gaaaattaat tagttcaaac      1920
     aaaatttgwg tcgtgcaaga tgaaaatagt caatttgtca acagtttaaa atccaagttc      1980
     cctttagtat ttacgcaaga taaatctgac agtatcaaag gtgtaaaagc tagattagtt      2040
     ctaaaggaaa acgcaactcc aatttttcac aaatactatg aaatccctca taatcaaaga      2100
     aatattgtcc gagaaaaact tgaaacaatg gttcgagacg gaagkttaac aaaagtcact      2160
     cattcagatt gggctkcccc catctggcct gttgaaaaaa aagatggaga tcttagaata      2220
     gttgtmgatt ttcgaaaaac tgttaataag cagcttaaag ttgatcatta ccctttgccg      2280
     aaaatagatg aaatttggat aaccttaaga gattgcaagt ttttcacagt cctcgattta      2340
     tccgaagctt atcttcaatt agaagtcact gaggattcga aagaaatact caccattaat      2400
     accccctggg gcttattcag atacaatcga ctaattgatg gtataagcag tgcccctgca      2460
     atttttcaag gtgtcgtaga tcacgtactc ctaaatcttc ctaaagttgg caaatatatt      2520
     gatgacattt ttgtcggagg aaaaacacgt gaagaatgta tgattaacac aacacagaca      2580
     gttaaacggt taaacgatca tcatgttaga cttaatctta ccaaaagctt atggattcga      2640
     gaagaaattg aaagattagg acacaaatta aataaagatg gtgtacaccc aacgaatgaa      2700
     aaaattaatg ccattgtaaa tgccaggccc ccaaataatg tttcagaatt aagagcattt      2760
     ctaggattag taaactttta tcgaaaattt ttagcaaact taagctcctt gttgaaacca      2820
     ttgaatgaac ttttagaaaa aggacaaaaa tttgattgga ctcctcagag aaatgaagca      2880
     tttcaaattg taaaacaaaa catttcgaaa aaacctgtac tcacaattta tgacccaaag      2940
     tatcctatcc ttgtatactc agatgcttca ccctatgggg taggagctgt tttatgtcat      3000
     cttatcgaag gttcggacaa acctgtaatg tttgcctccg catcgttaac caagtgtcaa      3060
     caaaattact cacaattaga tcgcgaagcg cttgcagcca ttttcgctgt gaaaaaattt      3120
     catgcttttc tcattggtca tcgttttaaa attataactg atagtcaagg attgaagtct      3180
     ctttttcatc ccaaaagagg aataccagtc atttcatcat ctcgcatggt gaggtggtcg      3240
     gtaattttaa gtgcttatga ttatgacata gaatatagga aaagtaccct tttgtgccca      3300
     gcagatgctc tctcacggtt acctttagaa gtaaacgtaa ataatgtaat aatggaaaat      3360
     gtaaacgacg taaatgtaac ttgtgaaatt ttaccagaaa tagccattag tagtgatctc      3420
     attgctgaag aaacaagaaa taaccctgaa tttcaacaaa tcttcttgtt cattttgaat      3480
     ggttggcccc aagcagtaga aaatgctaca ttgaaaccgt tttttatcat tcgaaattac      3540
     ttatcgctac aagacaactg tattttattc ggagatagag ttgttatccc tccaaaattg      3600
     caagataggg ttgtagaatt attacatgac tgccatcccg gcatttgtcg aatgaaagct      3660
     atcgcccgaa aaaacgtttg gtggcctacc ataaatcaag atatagaaaa tgcaattagt      3720
     aaatgtgaag catgccagat tgtcaacttc cgtccttgca caaatgtaac ttctccctgg      3780
     ccaaaaacag accacccatg ggaaagagtt catttagatt attttatttt ccaaaaactt      3840
     atatttctaa ttttagaaga cacttttagc aaatggatcg atgtgtggac agttacgtct      3900
     acaaacgcag accaattact acataaactt agaattcata tatcgactca tggtataatg      3960
     aaacaaatta ttactgataa tggcccaccc tttgactcca ttgattttgt aaatttttgc      4020
     gtccaaaatg gaattgtgtt gggaaaatcc cctccttacc atcccaaaag taatggtcaa      4080
     atagaacgtg cggttcaaac agtgaaaaga ggattgaaaa aaattattat tgatttaaga      4140
     aaagagaata tttcatgttt agatttaagt aacaaattag caaatttcct tttcaattat      4200
     cgaaatactc cctcagcggc tacaaacaaa actcctagtg atttaatttt gagacaaact      4260
     ccgagaacta gactcagcct gttaaatcct aaagataagt gtaaatttaa caacttgcca      4320
     aaattcgaag aaggagataa ggtcttagta aaaattaaca aagaagttca aaaaggggaa      4380
     atcttgagga agcttagtcc tatgacttat tatgtgtcaa taaatggagc gacaaaattg      4440
     tgtcacctga atcaattaaa gctaacgctt ctcactgaaa ataaatcaga gaatatagaa      4500
     aaatttcctt gcgataactc tgtgccatta caaccaacaa atacttttca aagacccaat      4560
     cctcagcatc ctacaacatc ctcggatagc aataccgatg ttggaaatac acctaaatta      4620
     aatgtagacc actttcccgc tgcaaataat tctggaagga aaaatccaga acaacaaacg      4680
     gagagagagg aaataaactt aaacgcggat actaacgcag atgtaaattc ccaaaatgag      4740
     gttgttcagc cctgtgttag aaaatctact agaattatta agaaaccgaa caaattagat      4800
     ttgtaaatta ttaaattgta attaaaattc atgtgacgtg gagaagag                   4848
//
ID   Gypsy-49_TrVa-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-49_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-229
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 353-353 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 229 BP; 61 A; 51 C; 40 G; 77 T; 0 other;
     tgttgtatct gtacttcgac acgtaattta gcctgcacga gttggcaata ctgtattatt        60
     ctgtcaagcg gtccacggtt gttatgtaac ctggatctcg gcatcattcg tgttctcact       120
     gtcaaatatg tctgaaataa actacccttt cgttctaaac cgtaaaccat agtagttgtt       180
     cgttactagt ctctaaagtt ctgaaaaacc ccctcgttag aatataaca                   229
//
ID   Gypsy-4_AA-I repbase;    DNA;    INV; 3510 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AA_;
KW   Gypsy-4_AA-LTR; Gypsy-4_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3510
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 977-977 (2011).
XX
DR   [2] (Consensus)
XX
CC   'ATGA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1557..3143
FT                 /product="Gypsy-4_AA-I_2p"
FT                 /translation="MKHRSTKASTVHQIITTGPPVFCRPRRLPVDKLKEAK
FT                 AEFQFLMDQGICQPSKSSWASPLHLVKKSNDKWRPCGDYRNLNAITVPDRY
FT                 PVPYIQDFSSIMHGKKIFTCIDLQRAYHQIPVAPEDVPKTAITTPFGLFEF
FT                 KFMTFGLRNAGQTLQRHLHAILGDLDFVYPYIDDLCIASDNVEQHEEHLRI
FT                 VFERLRQNGLVINAAKCQIGQESVDFLGHEVTSDGIKPKRSKVQAILDVPR
FT                 PTNAKQLKRFLGTINFYRRFIPRAAENQRMIGGNIRNDTTALEWNETTNDA
FT                 FERCKQDLANATLLAHPSPEAKLALDVDASNTCIGAVLHQITTNGPQPLAF
FT                 FSRKLSESQQKASTYDRELIAMYEAVKHFHDTLQAREFCIYTDHKPLITAF
FT                 QQRPEKATPTQQRRLSYISEYTTDIRHVSGEANKVADMLSRINTITTIEAI
FT                 DYDRMAELQKIDPELKQFLENPPTNTTVQLKRLKSPLASTPIFCDISIETI
FT                 RPFVQHEFRRTIMEKMHGVSHPGVRATTRLIST"
XX
SQ   Sequence 3510 BP; 1028 A; 984 C; 754 G; 744 T; 0 other;
     actggtgacc ccgacgtcgc ggaagtatca gaatcacgaa ttgttcgata gttatcgacc        60
     cacgatcgtc aaaacgccgt ttcaatattg cgaaatctcc gaacaaaagt gccaatttca       120
     ttgccgtaaa aattcacaat ggcgatcgaa gaagcttctg gaagcgtttc tggaactgcg       180
     aacaatatga agctggaaga tgttgattcc aaggaaccaa cggttatcgc caaaattagt       240
     ttcccggact tcgatccgga cgacattgaa acatggttca tgtgtctcga agctgcattc       300
     agtgtcaatt cgatacggaa cgacaagtta aaattcaatg cggtaattgt tgccctctgt       360
     tcgcgcgcga aatttgtgca cacagtgatc gccaactgta atgcgacgaa tgtcaacgac       420
     aagtacgacc gcctcaaagc agcggtactg gcgcatttcc aaccgtcaga aacacagcga       480
     ttgaccagcc tactctctgg tatgtcccta ggagatcaaa agccaagtgt cctcctgtcc       540
     gagatgcgtc gcttgggcgg agtaggttgc accgacaatg tgctatctaa cctctggctg       600
     cgagcccttc caaacaccac tcgttccatt attgctgcta tgccaactgc ttcgttggat       660
     gaccaagcga aagtagcgga caaaattttg gaagcacccc gtgagcaaat cgcagccgtt       720
     cagaaacccg aaacctcatc aacatcatcc ctcgagcaac gtatcgaagc cctatccaga       780
     cgcctggatg aagccctatc aggtaatttc cgtgggcgtg aacgacacag tagccgtgca       840
     cgtcaacgct catctggccg gcgagatgga actccagcga gaagcaaaat acctcgtcgt       900
     tggatctgtt ggttccatta ccgacatggt gcccaagctc gaaaatgtga gaagaacaga       960
     agcgaaaacc caaacatcaa gtgcattttt ttcgatggga atgtcgaggt gtacactcga      1020
     ccgagggaga attaaatcaa acaatcagcg tcaacaacca caccacatca agcagcgaac      1080
     catcaaccga ccagaacccc agaatcctga accaaacctt agacgtccaa cgaatccaca      1140
     tacacgatct caagtcatca aatcgattcc tcatcgacac cggagcggac atttcagtcg      1200
     ttccgcattc tccaaaagag cgcctcaagc ctacagcatc gcagcaactc ttcgccgcaa      1260
     acggtacccg aatccagaca tacggtacca agcggatcac cgtcgacctt gggctgcgaa      1320
     gaccatttgt gtggatattc gtcattgcag atgtgaaatc tcccatcatc ggcgctgact      1380
     tcctcaagca ttacgatctt ctcgtggatc tgcggagaaa caagttgatc gacagtacca      1440
     cccggctgga aatcgagaac attcacgcag tgaccgaacc agtcattacc acattcgatg      1500
     ccaattctcc tttcgctgaa atcctcgccg actatcaaga catcaccgtc ctcaacatga      1560
     agcacagatc gaccaaggcg agtaccgtcc accagatcat cactaccggc cctcctgtgt      1620
     tctgccgacc acgccggtta cctgtggaca aactaaaaga agcaaaagct gagttccagt      1680
     tcctaatgga tcaaggcata tgtcaaccgt cgaaaagtag ctgggccagc ccacttcacc      1740
     ttgtcaaaaa gtcgaatgac aagtggcgac cctgtggtga ctaccggaat ctgaacgcca      1800
     tcaccgtgcc agaccggtat cccgtgccat acatccaaga cttctccagc atcatgcatg      1860
     gtaagaaaat tttcacttgt attgatttgc agcgcgcata tcatcagatt ccagtagccc      1920
     cagaagacgt cccaaagacg gccataacaa cccctttcgg actcttcgag ttcaaattta      1980
     tgaccttcgg gctgcgaaat gcgggacaaa ctctccaaag gcacctacat gccatattag      2040
     gtgaccttga ttttgtttat ccgtacatcg atgatctctg catagcgtca gacaatgtag      2100
     agcagcacga agaacacctc cgcatcgtgt tcgaacgatt gagacaaaat ggtctcgtaa      2160
     tcaacgccgc caaatgccag attggtcagg aatccgttga ttttctcggc cacgaagtca      2220
     cttccgacgg aatcaagccg aagcgcagca aagttcaagc catcctggat gtcccgaggc      2280
     caacaaacgc caagcagctg aagaggtttc tcggaacgat taatttctac cgacgtttca      2340
     tcccacgagc tgcagaaaac cagcgaatga ttggtggaaa tatccgcaac gataccacag      2400
     cactcgaatg gaacgaaacc accaacgatg ccttcgaacg atgtaagcag gatttagcga      2460
     acgctactct gcttgctcac ccatctcccg aagcgaagct tgcactcgat gtcgacgcct      2520
     ccaacacatg tatcggagcc gtcctacacc aaatcacaac caatggtcct caaccccttg      2580
     ctttcttctc cagaaaatta agcgagagtc aacaaaaggc tagcacgtac gatagagagc      2640
     tgatcgctat gtacgaagca gtcaagcact ttcacgatac tctacaggct cgtgagtttt      2700
     gcatctatac agatcacaag ccccttatca ccgccttcca acaacgacca gagaaggcaa      2760
     ccccaacaca acaacgcagg ctcagctaca tcagtgagta taccaccgac attcggcatg      2820
     tatcgggcga agcgaataaa gtcgccgaca tgctgagtcg catcaacacc atcactacaa      2880
     ttgaagcgat cgactacgac cgaatggctg agttgcagaa gattgatcct gagctgaagc      2940
     agtttttgga gaacccacca actaacacca ccgtccaact gaagcgattg aaatctccat      3000
     tagcatctac acctatattc tgcgacatct ctatagaaac cattcgtccg ttcgtgcaac      3060
     acgaatttag gcgaacaatc atggagaaaa tgcacggtgt atcccatccc ggagttcgcg      3120
     ccactactcg tctcatctcg acctgaaatc aacaatgtcg aagctaagcc ccacacctac      3180
     cagcaaccat tcaaggaaat ctgttttcgt gcagaaacaa ctaactacat gcagccacgt      3240
     cttcgtcaag gtaggagcga ttaaaccacc gctctcacag ccgtacgatg gaccatatcg      3300
     tgtggttcgt cggaagaaaa aagtcttcat tgtggacgtg aacggcaagc caactgctat      3360
     taccatcgat cgtttgaaag cagcgtacat acaggcagat catcgatgcg ccgaacacga      3420
     aactacagca gaccagacta cctaccaaac acgctctgga cgccgcgtga agatccctcg      3480
     tcgatattgg taaaactaag gggggagtag                                       3510
//
ID   Gypsy-4_AA-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AA_;
KW   Gypsy-4_AA-I; Gypsy-4_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-229
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 978-978 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 229 BP; 77 A; 62 C; 33 G; 57 T; 0 other;
     tgtggcgtat ccgacacagc aacccattgt acacacgaat tatataccac taccctatat        60
     tccttgaatt attgcgtaat aaccatacat acacacatcc cacagaatta tcacacgatg       120
     atgtaaatat agcttttagt tcagtacaga ccaccaaacc cgatagtcta gctatcgtcc       180
     gaaagaacgt ctcgaatcgg tatcaaaacc gtaggcacta gtccctaca                   229
//
ID   Gypsy-4_ACe-I repbase;    DNA;    INV; 9667 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-9667
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 732-732 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to the consensus. The 3'-end is not determined.
XX
SQ   Sequence 9667 BP; 3627 A; 1915 C; 1775 G; 2345 T; 5 other;
     gaacatgaaa attgggggct catccgggat ttaaagtgcg atctttggaa agggtaatga        60
     actcggattc ctcaggcgat aagtctacaa caggaaatct ttataaaact gccctcggtg       120
     actcaattga atctaaatca aacacacaag acacagtata tacttccact cctgccaaac       180
     cctctcaatc cactactggg gacgttgatc tagattttaa taaaatcgat attacagaag       240
     atatttcaac aaatttctcc aaacctcttg tactcgattt ctcctcttct tgcgacttcg       300
     cagacgaaac aattcaacca aggtttagtg ttatgaccac ccctaaaaca gagggaccta       360
     acggaacaat gacgcaccat aacttattcg ctacactaaa atacgctgtc gaagccgtac       420
     cttttttcga tggcaaaaac atccctttaa actactttat cgagggatgc gaggaagcaa       480
     aatccatgtt accagatgaa gctgaaccgc aattcaccaa agtcataaga acaagaattg       540
     tgggtgaagc gcgccgcact atacaagacc aagactttaa cagcgtgtag cacaattaac       600
     caaatatcta aaacaggtct acggcgcttc aaaaaatata tatcaattgc aaggggagtt       660
     aggtcattta tcaaaagaat gaggaagaca taatcacata cgcgaatcgg gtgaagattt       720
     taggaaaaca aataatggag gcccataaaa tttcgggaaa taccctttgc gatcaaaata       780
     ttaaagtatc tttagaaaag gacatgtgta agtgttttat taggggatta aaaccagaaa       840
     ttgaacaaag gatagcaaga aacttaggtg ttcaagaaac ggtagccgat gcattgcgga       900
     tagaaagaga actccattcg atgacagatt tacgacgaaa tcaagaaagt acatcgagta       960
     aagcactaaa tactaataaa tcacgagaaa ctgtcagatt tgttataaag aaggacattc      1020
     agcttcaaac tgtagaaaat tgactaattt tggaacagag attttagtat gtcaaatctg      1080
     taaaaaacgc ggacacagcg ctgataaatg tcgacttcgc gaccctcaag cacgacaatc      1140
     cattaacatt ctgcaaggaa ataatattat ttgtcaatta tgttcaaaat caggccataa      1200
     tgctaaaggc tgtcgaacaa ataataacag taatcagaat aagtcccctt taatttgtca      1260
     gtggtgtgat aaacccggtc attcagccga caactgttgg aagaaacaaa atgaacaacg      1320
     taattcagaa cctaaagcaa aaatcatttg ccaaatttgt aataattttg ggcatattgc      1380
     taaagactgc cgatctaaga tagggtaaaa cgcggcatcc tcagactcat tattctgccg      1440
     atactgtaag ggacaagggc atctcctcga aagttgtgag ctaagaatcg caagtaataa      1500
     tcgaaggaaa atgaacgaac agggaaactc caacggcccc tcgaagccgg gtgtgccaca      1560
     ggggaccgag cgagtctcac acccatcgac atcaaagaag gcccagtagg caaaaacacg      1620
     ttagaaatac gatccgtaac ccttgacaaa caggcgcgta cctactgttc aagtaaatct      1680
     ttgtaaatca gaacctcaca ttacttttat gctaggtacc ggttccgggc caaatataat      1740
     taaggaaaat tttgttccca aaaacagcat tattaattac aataacgtat tgaaattaaa      1800
     cggtataaac gaatactccg tctatactct tggagaaatc tccctacctt tttgggaaat      1860
     aaagtagcct ttcatattgt agcaagcgat ttccccattt cgcaatccgg aatattaggt      1920
     aacgattttt tcaaacagac ttcctcaaaa attgattacg cgaagggata tttagatata      1980
     tcaggaatta atataccttt cttttctcca gaaactatca tcgcaccacc acgatcagaa      2040
     tctttatttt atgtgagaat aggaaatcca gagataaaaa tagaatatat accaaaatta      2100
     aaaatagcac acggaattta tctaggagat actatagtag agaatgtctc tggaaaggca      2160
     tatttgaacg tcataagcac attagacgaa gaagttgaag tgcaagtacc aaccttacgc      2220
     cttaaacctc taaatgaatt attcgacaac gatagctcaa gcattgaaaa gcaagatgat      2280
     caaagagaaa ttgcaaatac gcaaatttgt tttacccatc caaaagatat ccaaaatctc      2340
     gaagacatta gtaacgacgt tagttcaaat gataacaacg acggaattat ggacgaagac      2400
     gaagtcgcta agacagaagg aaagaatgac agaaaaataa aaggaaaaaa tgaagtattt      2460
     aaagaaaaga atgagaataa attaatgaga ggaactaaag aatcaagtaa aaattctaca      2520
     ctaaatattc atcgagagga ggatttccac atcccctccg aaatcctaga atcttaaaat      2580
     ccttggaggg ggaagttatc aaatccctcc tgaaaatttg aataattcta aaatccttgg      2640
     agagggaagt taccaaacct ctcctgaaaa tttgaataat tctaaaatcc ttggagaggg      2700
     aagttaccaa acctctcctg aaagtttgaa taaatctaaa atccttggag agggaagtta      2760
     ccaaacctct cctgaaagtt tgaataawtc taaaatcctt ggagggggaa gttaccaaac      2820
     ccctcctgaa aattcaaata atcctagaat tccagaggaa agttccatct ccctgktaaa      2880
     ttctactcct gtctgattgc aaggaggkaa gtaaccaaat ctcgctatgc aatgcgactc      2940
     gactttatca aagggagcca aaagaaaaga gctcctcttt cgaaaaaatt aaattatcaa      3000
     gggttggaat atccgcaaaa aatgatattc atcaaaatga ttcctctcac gttactatcg      3060
     atgaacttct agaaagaatg caatcatata atccttatat aaatgttcgt aattccaaaa      3120
     gaaacaaacc atcttctaaa atcctagcgt ctacacaaaa tcaatctcaa gaaatgatgg      3180
     aaaaatttat gcgcaaacgc aagtcaaatc acaaggaaga actgaacctc gaaacgaaaa      3240
     tacgaaaaat atttcacgcg aatgcttagt tgtgtcagaa gaaattgcaa aggatagact      3300
     cacggaaatt acagaattgt tgcgtttaga gcatttaagt tatttttccc aggaagaaac      3360
     aagtataatg aaacttgtaa ctgacagcca ggacagattt cacatccctg gagagaagtt      3420
     aacagcaaca aatatattac aacatcaaat acctacaacg gatgaccaac ctatamatac      3480
     gcgacaatac agattcccgc aaattcataa agaagaaata aataggcaga tagaagaact      3540
     gttagaagga ggcattgcat aaaaccttct caatcaccat acaatacatc tatctggatt      3600
     gtgccaaaaa aggaagattc aaaaggaaac aaacgttgga ggatggttct ggacttccgg      3660
     gccttgaacg ataagactat tggtgatgcc tacccgcttc ctaatatcgt cgatattttg      3720
     gatcagctag gcggagcgca atacttttca gtatgtgact tagcctccgg attccatcaa      3780
     ataaaaatgg atcctgcaga tagccataaa acagcattca caactccatt cggtcactac      3840
     gaattcgacc ggatgccctt tggattaaaa aacgctcccg ctaccttcca gcgattaatg      3900
     gatttggtat taacaggatt acagggagaa gagctattcg tttatatgga cgacattgtc      3960
     atctacgccg cctcattaga agaacatgaa aaaaaatata atttgctaat agagcagtta      4020
     cgcaaagctg atttaaaatt acaacccgac aaatgcgaat tcttgaaaac tgaagtcact      4080
     tacttagggc atgtaattag taaagatgga gttaaacccg acccaaagaa attagaggct      4140
     gtatggcaat ttcccaggcc taaaacacaa aaaaatatca aacaatttct tggattagcc      4200
     ggatattacc gaagatttat accatttttc gaaattagcc aaacctctca ccaatttatt      4260
     aaaaaaatga ccaaatttga atggacgttg gatcaagaag attccttcca agcattaaaa      4320
     gagaaattgt gtgaagaacc tgtcctacaa tatctcaatt tttccaaacc ttttatccta      4380
     actactgacg cttccggaat agcaattgga ggcatcctat cacaaggatc gataaataaa      4440
     gatcaaccga tagcatacgc ttcgcgaact ctaaccaaaa atgaaataaa atacagatac      4500
     ttatgagaaa gaagcattag ccataatata ctgcatcaaa catttcagac cttatcttat      4560
     actggtcgaa aatttacctt agttacagac cacaaacctc cttctctggt ttaaaaatgc      4620
     acaggatgca aacatgcgaa tactccgctg gagattaaaa ctagcggaat atgactacga      4680
     cgtagtatac aaggcgggaa aaactaatgt aaacgccgat gcattatcaa gaaatcctgt      4740
     agatttcagt gaagcaaatt gcaacataat tagccacaat aaacctttaa accctaatga      4800
     ccctgaagat gcagaagcaa tttctaaaat gctggaagac tccgatgaag aagacgaaga      4860
     agacgaggat tacacgttat acctttcaga cgatgagaag atctgggcct accgatcaac      4920
     gacaaacagc ctgaggaaga tttagaacct ccccgactac gcaaaaagac gtgaaggaac      4980
     caacaaaatc gccattaaag gggaaaacgc taatgcaaga tccctctaac gctattagca      5040
     gacaaacccg aagtcaaacg agaggcaata aagtacaaca ggaaaaatca caggagttac      5100
     agcaatatga aaacggaaga agtgaagtag aaagtagaaa cgatccgcca gacaaaatga      5160
     gcaacgaaga aggaaactca gaagaagaag gaaaagacga agagatgaga gaagaaaacg      5220
     gaggatggaa gatcaaagaa gaaggaaaaa cctatcatca ttaatcatca agtaataaat      5280
     aataataata atattgtgga ttcacgcgac ttattatttt tacgaaaaga taatgtagcg      5340
     tatttcgtag atactaatgg aaaaccttta gactccggtt cacagaagtt attcgaaaga      5400
     aatgaaatcc cctgtttagg aaacctcgcc ttaggtaaag ccaaggccat aaaatacaaa      5460
     aaaacattat catatagctt tgcctgtcag cgaaggacaa cgcgaaggac caacgatgac      5520
     tctcacccag atctctgcag caataaaaga cttacggatt gtcgtggaaa cccgaaactt      5580
     agaaactctt agcattgcga aaacagatta tattaataat gtaccctgga acaatattaa      5640
     aaccatattg caattaatct ttgccgattc accgatcaaa ctaattatat gcaacggact      5700
     agttaaatat cccccaaaga tcttcgtcct gcaatcggag aaacgcattg tttacctacg      5760
     ggtggacata gaggcgtcac aaaaacatat aatagaataa aacacaaata tcattgggaa      5820
     aatttgaaat ccgacgttca acgctacata cagcaatgtc aattaaaaaa attagtacga      5880
     gtcaaaacca aacaacctat gatgattact gacacaccag gatcttcatt cgataaggta      5940
     gccatggata ttgtaggatc tctatctaaa accgagaaag gaaatgaata tatactaaca      6000
     ttacaagatc agctaactaa attttgcatg ggcatacccc tgccagatca aaccgctgaa      6060
     acgatagcag aagcctttgt tgacagattc atctgcatat taggagcacc caaggcaata      6120
     ttgacagatc aaggaagaaa ttttattagc gagttaatga agaaaatcgc aaaattattc      6180
     aggattcgca aatctgcgta ctaccgcttt ccaccctcaa tcaaatggat cattagaaag      6240
     atctcatcat gcgttgggmg aatatttaaa acaatacgcc aatgaacaaa aacaatggga      6300
     tagatggatt ggattagcaa tatttaatta caacactagc atccacgaag ccaccaaaca      6360
     tactccatat gaattagtat tcggcaaaat agcaagaatg ccatcaaatg aattgttagg      6420
     ccccgaagac aaattggcaa gttatgacga atatctgata aatttagtta cacagctcca      6480
     caccatccaa ggaaatgctc gcgaaaatgt agtagaagcc aaaatcaaat ccaaaaaaca      6540
     ttatgataag aagattaatc cgcaaatatt taaaccagga gattatgtat tcttattaaa      6600
     gggaccaaaa ccgggaaaat tcggggatca atatacagga cctcacgaag tgttagaaat      6660
     attaaatcgg aataatgtaa aaattagaat aaagaaaaat agtcgaatag tacatcctaa      6720
     tagattacga atctcttaca taagaccggc tctcaataat taattcaaaa taataataag      6780
     taaataaaat ttcagatgga ttcccggatg attggacgaa ttacgacaat agcattatta      6840
     ataagttgga cccaagagac ttacgggata atagggtacg actgcggatc accattagca      6900
     aatataacta caatgtcatt acttaatatc gaagagtgtg atataccacc gcaaaaggtg      6960
     aataaaaccc taaaatatat acaactcgtc caaattaacg aattcaaatc cgtgagagta      7020
     attcaatgta aagtgagatc gatagaactg taaaaaaatg cggaatgttc tctcatacta      7080
     tggatgtgca caacggtaaa tactcgtaca tacaagaaac atctcgcgag gcgtgtgaaa      7140
     ggatgcacat tatgggatat ctccaaatgg ggcacattca cataaccgga ctaaaaccaa      7200
     atcagacaga ctctcgagca gccaccttag cagaacaagt ggataacgac ggatcatgta      7260
     gcggaagcac gtattccgat ccctatggaa catggaccga tgttattgta ttagcaacta      7320
     taacgattac gctattagat tatcatgcca ctgtacgact aaacactaat caggtaatgt      7380
     tacgatcagg tgtaatttgc gaatttgcct ctacccattg tgtggatatt gaaggaggga      7440
     atacttattg gaatgcttta cctgcacgag actcttgtgg aataacaaat tatggcgcac      7500
     tttacactgg atttgcggaa atattgacag acaatacggg cgtacgacct caaataattt      7560
     acaccttaaa ttcacaagat accgtttttg ccttaacaaa aaaggggata gaaacaatgt      7620
     gcggccatgt tcttgtaaga accgaacccg attattaatt ttcgaaacga cacccgataa      7680
     taaaattttc agcaaagtat ataaaccaga aaatctcgac atttttacct acatgaattc      7740
     taaatttgtg tacgtggaaa aacatatacg cacccaaata agccagttat accgaaatgt      7800
     acttcaacaa cagtgtaatc tcgaacagaa aatattgaaa atattaaaaa acgccctagc      7860
     tctcgccact cattcaccgg atgctttcgc ttaccacgta atgcaagggc ctggatatat      7920
     ggctttattg gccggagaag taatacacat agtaaaatgt gtgcctgttg aggtaaaact      7980
     cgcctcaact caagaatgtt atgatcaatt acccgtgatt agaaataacg aaacacagtt      8040
     cctaacacca caaactcaca tcctgatgcg acaaggaacg caagtgactt gtaattcgct      8100
     cgcacctgcc atgtaccttc taggagattc atggtatcgg tttacgcccc ggccagtaga      8160
     aactttacca cccgtcgtac tcaaaccaac ttggaaatat atcagccccg gatcactcgc      8220
     cacgagcggt atatattcag ataatgacct agaaacctta cgagatcaca taatgtttcc      8280
     agccgaacga ccatccgtac tcaataccat agcacgagga atgatgggac aaccaggatt      8340
     tgtgaatgga ggttcgttct ctaacttatt agatgaagca tcaatagaaa agatagccat      8400
     gtctgcttgg gaaaaatttt ggaacagatt cctaattttc ggaaatgtta gcgctggaat      8460
     aataggaata tatataagcg caaaaatcat aaaactaata ttagatacaa tcgtacatgg      8520
     atatgctctg cataccgtat atggatggtc aatgttctta ataggagcca tttgggattc      8580
     acttaccaat cttttactac acctaggaaa ggagagacgt acaaacaaga acatagctgc      8640
     ttcagctccc gtcgagctgg aatctaaaga aataaaatat tccgaagtac gagatgaaac      8700
     gaggacagaa tccaactatc ctctccttcc tcccaaagaa gcctccacct atacccttga      8760
     gctaaaaggg tgaataaagg gaatctcctc tgcctattaa actccttctg tccctccact      8820
     ctgaaaaaaa aaaatgaaat gaaaaaaaaa caacttataa ttcttttata gataacaatg      8880
     gagattacct gcataaacac gcgacttcta acacgtagcc cattgaaagc acgaataata      8940
     aaagtggact cacgaaattt tgggtccaac tccataatag tcacgaggac ttcaaagaac      9000
     taatagacga actcactcgt cggatgacgc gcgtagccga tccctatctt tactacccaa      9060
     tcacactcac ctggacgaga tggttgcggt ccaagaagga cgaaagtggc aaaggagtgt      9120
     cctcacccaa attcgagggg atggaacagc agtgatcgct ctaagagact gggggcgcat      9180
     tatcgagcga ccctgtcacg atctctgcat acttgaggat aaattccgcg atctagaatg      9240
     gcaggcaatt ccctgcgcac tcgcttacac tggctctgac cctgcaaaaa ggatgtggtc      9300
     ccgacgaagg cagctgaccc aatttctaac agagcggcgc gaaggatgga tcagcattgt      9360
     gggagatata aacgaagagg ctgcgcttgt aaaactagaa ataagaaacg agtgtggcag      9420
     agaaataaaa aatgttaagg acattctaat aagtctaggc catgcacagc acagtgaaaa      9480
     aatgctagaa actgtacagc cctctgttga atcggctata ttaagaagaa actaaaaata      9540
     atttgtatcc acgaccgctc aaaatataca aactattata atacacgtat taatagaata      9600
     acaaaaaaaa acctctaaaa aaatatatat atattaataa gtttaattag tattagctat      9660
     tgaaaac                                                                9667
//
ID   Gypsy-4_ACe-LTR repbase;    DNA;    INV; 2147 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-2147
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 733-733 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2147 BP; 647 A; 565 C; 313 G; 621 T; 1 other;
     tgttacgtct tgacgactcc acgattcttt tctttcgtgg agaaaatctg tttttctctc        60
     aaatgcgaat aacggggtca atagcatggc ggatcgaata ttgattttgt ttattataaa       120
     tgactagaca tcaattaaag gaaaataatt attagtgttc gattgaaagc acgtgtattg       180
     gccctatgac tcacagataa gcctgatcac attttctgac tcacatataa aacgaaaaca       240
     cattaatcac tcctattctt tcgaaataat tgggaaacct ttggaaaaaa gagatgaatc       300
     acccatccaa agtccaagta ccgaattgca tcacatctcg atatatatat ggcccttcgg       360
     aaaagcgcag cagtcacaaa aaacttttcg agcagtcagt cacaaaaaac cttttcattc       420
     gagcagtcag tcacaaaaaa acttttcgac atcagtcact aaaaaacttt tcgagcagtc       480
     agtcataaaa atctttcagt cggtcataaa aaaaatcttt cgaagtgaca ttcaaaatca       540
     gtcgacaaat ttaagtgcgg gttctcggct cagtgcaatc caagcaaaat caacagtcca       600
     ttgaagatct ttcatcttaa gttaagagcc atcactggga catcaccgag cattcccgct       660
     atagttcgcc accacttcca gcaaacagta agaacaaatt cctttttttt cttttttctt       720
     ttctttccca tgttacttta atttcaagtt atatgaccat caatattctc tcgctccctc       780
     attcctcctc gatctattct ctctttaacc acagacgcac cctgcctatc ctttctccta       840
     acaaattact taagcgataa aacgcttcaa gtaattcacc tctttctcta ctcagaatta       900
     cttaagcgat aaaacgcttc aagtaattca cctctttctc tctcatcatc tttctcactc       960
     agaattactt aagcggtaaa acgcttcaag tgattcacct ctttctctac tccgaattac      1020
     ttaagcgtaa aacgcttcaa atgattcttc ttttccgtat ccacagttac ctaagcaata      1080
     aaacgcctta agtaacccac ggttactctc cctagaacca aaccataact cctggaaaat      1140
     ctatctcttc ccccttctct tcggaattat cttctccttc tacgtcatgg gcactaacga      1200
     gagaaaattt taatagatgg tctggcggaa cagacacaga gcaggacgca agaaacgggc      1260
     caaactcgag aaactcaaaa aagctaacgt tccaattatt acgcggatac aaacagggca      1320
     atttatctcc cctcaaaccc ttcgtcgact taaaagggct catttgcgcc aaaaatatcg      1380
     ggatcaaggc tcccccgacg tccctgtgat agatcttacc tccgacaatc ctaccgatag      1440
     ttccccccgg aatatacctt cagacccttc cttggatctc gaatttcctt ccccttctta      1500
     ctctccctca ctttgacaga ctctccacac cccgcagttc cttctctctc tttttccccc      1560
     gtcccttckg aggacagcag gtccttcgat gagattttcc aatctcttga aactctcgcc      1620
     gaatctacaa ggttctccct ccccttgatc acaccacctc atcccacata cacacacata      1680
     cacactcata gacagaaaac ctagttagct taatcttagc attattatag ttatcgtaca      1740
     taaatgtata catacaggca ctacatacat aaatatatac gtatatctaa gtaaataaat      1800
     gtaaccaatt atattttttt tgtaaaatca ataaaacata attatcattt atttcgccac      1860
     ccttccgatt cactgcgtct agacaaagat cgtacaggtc caatccctgg tcaaaaggat      1920
     taagttcctt gacctaaaag aggaccgacg gatgcacaat ctcaaatcgg gtaatagcgt      1980
     cgcgtatcga cgttgatcca catttgggac ataatcaagt gcgtccgact tgtggctccc      2040
     gcctcagagc gataaccaca agagcggtat cagttgcgtc cttcctcggt ccctcctaat      2100
     tccttcttcc cttcgaaata aacgaatcct ggggtctgga cgtaaca                    2147
//
ID   Gypsy-4_AEc-I repbase;    DNA;    INV; 5067 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   22-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AEc_;
KW   Gypsy-4_AEc-LTR; Gypsy-4_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-5067
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 665-665 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [2613-3041] - Reverse transcriptase
CC   Positions [4181-4657] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1578..3500
FT                 /product="Gypsy-4_AEc-I_2p"
FT                 /translation="MRELASQGGIDVESTIQYIIDGIPDGSSKVMLYGAQN
FT                 YNELRSCLRVYEKIQERGTTAMKNNPKKEVANKANKDDAKSVKEEKKTTKP
FT                 GERCYNCGESGHRSDKCKFRDKGKKCFHCNNFGHEAKHCPDKNKSNTTQVM
FT                 SNILVKAVDVNRMFKQVIIENKSLCALLDTGSHLSLMREDVFKTFKTLKLH
FT                 ESEVLLTGIAQGRVKTLGYFQSTVTIDNVDFPLAFHVVPSEALNVDVILGT
FT                 DLIIQAEVRIDKDGIAISKPNVSIFLSQIELQPEKDEAICTDTIIDKEAKN
FT                 VAEGMMREYKPNKSKTTDIELSITLKDETPIFQAPRRLPLKEKEIVENQVN
FT                 EWVSEGIIEPCSSEYGSPVVLVKKKNGSHRLCVDYRKLNRVMIKDKYPLPV
FT                 IEDQIDRLSGARIFSTIDLKNGFFHVSVAKQSRKYTAFTTYQGQYQFLKVP
FT                 FGLCNSPPVFQRFINQIFRPLVNEGILLLYLDDLIIIAPDVEEGIRRLRQV
FT                 LRVASDYGLDINKGKCQLLQSRVEYLGYIIENGTIHPSPGKIQAVSNFPEP
FT                 RTLKDVQSFLGLSGYFRKFIESYAIKAKPLSDLLRKENSFRFDVKEKESFK
FT                 QLKSDLSNSPVLRIFNPKFETELHTDACKEWFRGNLVAEEPGR"
FT   CDS           3722..5026
FT                 /product="Gypsy-4_AEc-I_1p"
FT                 /translation="MVEEFDVIVEHRASPRMKHVDALSRYPVMAISSEDNI
FT                 ILKVMKAQKSDPELRAILEVLKEKPYDDYTMRNDVLYKFKDGRELLVIPQD
FT                 MQSEIILMAHGRGHFSVKRTEEAVKQEYYIPMLSKKTENVIANCVPCILGN
FT                 KKAGKQEGFLNPLTKGDLPLHIYHLDHLGPLDSTSKKYNHILAVIDSFTKF
FT                 CWLYPTKSTTSKEVITKLQMQSQTFGNPAGIITDRGTAFSSLEFQNYCEEE
FT                 GIKHSMVTTGLPRANGQVERLNRTIIPILTKLAMNDPTKWYKYVPIVQQTV
FT                 NSTFHRSISMTPFELLTGVKMKQKNDLTVKSAIEEEFRLQFEQDRDQLRKQ
FT                 AKEQIRKVQNENRKTYNLRRREPTKYKINDLVAIKRVQVGPGKKLCAKYLG
FT                 PYKVVRVKSNNSYDVEREVPGEGPKKTSSCAEYMKPWSSVL"
XX
SQ   Sequence 5067 BP; 1734 A; 946 C; 1231 G; 1156 T; 0 other;
     taatttgggg gctcagccgg gatcgagcta ggttttgact gtggcgagaa gaacgacgaa        60
     acgacgctct gcacgagaac gaggaacgac gctctgcacg aggtacgagg aacgacgctc       120
     tgcacgagga acgacgaacg acgctctgca cgaggtacga cgaacgacgc cttgcacgag       180
     gtacgacgac gacgcttcac acgagggacg agaacgacgc ttcgcacaaa gtgtgacgag       240
     gaacgacgct ctacgtgagg atgacgaacg acgcctcgca cgaggaaaac gacgccaagt       300
     agtgaacaac gacgacgacg ttacgtggaa ataacgacga gaaagacgaa acgaaagacg       360
     aaagaagaaa gagagaaaga cgagacgaaa agacgaaaga agttggacga aaagggtaag       420
     acgaagacga aagacgagac gagagacgaa aggaaaaaaa cgcaacgaaa gaagaaagac       480
     gagacgaaaa gacgaaagaa gttggacgaa aaggataaga cgaagacgaa agacgagacg       540
     aaagacgaaa agagaaggac gcaacgaaga ggaaagacga gacgaaagga agaaagagga       600
     agtctgccag tcttggcggg aagttggtag aggaacattc gagaaggctg acgagcgtga       660
     gtatcggcca ttttgcttgt agggaaaact gaagacgatt gggcattagt gataaacatg       720
     gagacgctag gaaagattaa gccaatcgcc gacaagatac gaacgtcgtc gcgcccagcc       780
     gtatacgcgc tgtataaatt tatattcgaa aaagacggag atcgcactag tcgcaaccaa       840
     ctacgtaatt tctgtggttt cgatttcgac gatgcttcag ttgaatttcg tgcaaagttg       900
     gaatactctg ccattttctc gattggtgat ctgacatcta tgtgcaatat ccttggcttg       960
     agctacgtcg gcgccaaaga agaactgcga cagagaatta cgcgagcgct cgtgaacatt      1020
     agaacgttgt gccacgtgcg cacgacgacg atgtagaaac cgaggaagag tcggaagagg      1080
     agcccgatga gttacagcaa ggaggcgctg aacgagttga tgaaaaatca gcggaaaatc      1140
     agcgagcagg cgacaaaata aatattccgt cattggccac tagtagcact gactccgagg      1200
     ccggcgaacg agatttgcca agaaggggac gacaaaagag tacgaagatt accttcaatt      1260
     tcaaagacgt tgaagatact atccgtccat tcgatgggag cgaccattat acgattgaaa      1320
     gatggatttc ggattttgag gagttagcca ctctgtttca gtggaatgac attcaaaaat      1380
     tggtttttgg ccgcaagtcc ctaaagggtg tcgctaaaac gtttgtgcgg ggattgagta      1440
     ctgtgcaaac atggaataaa ttgaaagcag ctctgaagga agaattcagc ttgcgagtga      1500
     acagtgcaga catccaccga aagttggcca aaaagaagtt aaggaaggat gagagtattc      1560
     aagaatacta cctaactatg agggaattag cgtcgcaagg aggtatagac gtcgaatcaa      1620
     cgatacagta catcatcgat ggtatcccgg atggcagtag caaggtgatg ttatatggag      1680
     ctcaaaatta taacgagctc aggtcctgcc tccgtgtata tgagaagata caagaacgag      1740
     gaactacagc catgaagaat aatccgaaga aagaagtagc aaacaaggca aacaaggacg      1800
     acgccaaatc ggtgaaagag gaaaagaaga caacaaaacc aggggaacgt tgctacaact      1860
     gtggcgaaag cggacatagg tcggacaaat gtaaatttag agataaagga aaaaaatgct      1920
     ttcattgtaa taactttggg catgaagcca aacattgtcc cgataaaaat aagtccaaca      1980
     ctacgcaggt aatgtcaaat attcttgtta aagcggtcga cgtgaatcgg atgttcaagc      2040
     aggttataat cgaaaataag agtctgtgtg cattattaga caccggtagc cacctctctt      2100
     taatgcgtga ggatgttttt aaaactttta aaacgttaaa gttgcatgaa tcagaagtcc      2160
     ttttaacagg catcgcgcag ggtcgagtaa agacgctcgg ttatttccaa tcaacggtca      2220
     caatagataa tgtcgatttt ccgttagcat tccatgtagt tccgtccgaa gccctgaatg      2280
     ttgatgtgat tttaggcact gacctaataa ttcaagccga agtaaggatc gataaagatg      2340
     gtatcgcgat ttccaagcct aatgtttcca tttttctctc acaaatagaa ttacagccag      2400
     aaaaagacga agcaatttgt acagatacaa taattgacaa agaagctaaa aatgttgcgg      2460
     aaggtatgat gcgagaatat aagccgaaca aatctaagac gactgatatc gaattgagca      2520
     taacgttgaa ggatgagacg cctatattcc aagctccacg acgattaccc ctgaaagaaa      2580
     aagagattgt cgaaaatcag gtaaacgagt gggtaagcga aggaatcatc gagccgtgtt      2640
     cgtctgaata tgggagccct gtagtactcg taaaaaagaa gaacggttct catcggctgt      2700
     gtgtcgatta tagaaaacta aatcgagtaa tgattaagga taagtatcca cttccagtaa      2760
     tcgaggatca aattgataga ttatcagggg ctcgcatatt cagcacgata gaccttaaaa      2820
     acggattttt tcatgtgagc gtagcgaaac aaagtcgaaa atatactgcg ttcacaactt      2880
     atcagggtca atatcaattc ttaaaggtac cttttggatt gtgcaattcg ccacccgttt      2940
     ttcaacgatt tataaatcaa attttccgac ctttggttaa cgaaggaatt ttgttattat      3000
     atctagatga tttaataata attgcgcctg atgtagaaga gggcatcaga cgattgcgtc      3060
     aagttcttcg agtcgcaagc gattacggtc tcgacataaa taaaggtaaa tgccaattgt      3120
     tgcaatcaag ggttgagtac cttgggtaca taatagagaa cggtacaatt cacccttctc      3180
     ccgggaagat tcaggcagtt tcgaatttcc cagagccgcg tacgttaaaa gatgttcaga      3240
     gctttctcgg tctatcggga tatttcagaa aattcataga atcttacgcg attaaggcaa      3300
     agcctctgag tgatttgcta agaaaggaaa attcgttccg atttgatgta aaggaaaaag      3360
     aatcatttaa gcagctgaaa tcggatttaa gtaacagccc ggtgttaagg atatttaatc      3420
     ctaaattcga aactgagtta catactgatg cgtgtaagga atggtttagg ggcaatcttg      3480
     ttgcagaaga acccggaaga taacaaacta catccggtat attatatgag tcgcaagacg      3540
     acagaaacag aatccagata tactagctac gagctcgaag ttttagccgt aataagagcg      3600
     ttagataaat tcagacacta tcttttgggc acgcgattta agatcgtaac tgattgtata      3660
     gctttcaaac aaactctaag taaagtcaag ttatccgcta agattgcgag aatgggcttt      3720
     gatggtcgag gaatttgacg taatcgttga acatagagct agtcctagga tgaaacacgt      3780
     agatgcgctt agccgttacc cggttatggc gattagtagc gaagataata ttatattaaa      3840
     ggtcatgaag gcgcagaaaa gcgatccgga gctacgggcc atcttagagg ttttaaaaga      3900
     gaaaccatac gacgattata cgatgcgtaa cgatgtacta tataaattca aagacggtcg      3960
     tgaactgctt gtcataccgc aggacatgca gagcgaaatc attctgatgg ctcatggtcg      4020
     aggtcacttt tctgtgaagc gtaccgaaga agctgtcaag caagagtact atattccgat      4080
     gttatccaaa aaaactgaaa atgtaatagc aaattgtgtc ccgtgcattt tggggaataa      4140
     gaaggcaggt aaacaagagg gtttcctcaa cccattaact aaaggtgatt tgcctctaca      4200
     catatatcat ctggaccact tgggaccatt ggactcgact agcaaaaagt ataatcacat      4260
     attagctgta atagatagct ttaccaagtt ttgctggttg taccctacca aatccacgac      4320
     gtctaaggag gtgattacaa aactgcagat gcaaagtcaa acatttggaa atccagctgg      4380
     catcataacc gacagaggca ccgcgttctc ttccctagaa tttcaaaatt attgcgaaga      4440
     agaaggtatc aaacattcca tggtcacaac tggtctaccg cgagcaaacg gacaagtaga      4500
     aaggcttaat cgaacgatta tccccatttt aactaagctt gcgatgaatg atcctacgaa      4560
     atggtataaa tatgtaccta tagttcaaca gactgtaaat tccacttttc atagaagtat      4620
     aagcatgacc ccgttcgaac tgttgactgg agtaaaaatg aaacaaaaaa acgacttaac      4680
     cgttaaaagt gcaatagaag aagaattccg attacagttc gagcaggatc gtgatcaatt      4740
     acgaaaacag gctaaagaac aaatccgtaa agttcagaac gaaaatcgta aaacatataa      4800
     tttgagaaga cgcgagccaa ctaaatataa aattaacgac ttagttgcga ttaagagagt      4860
     gcaggtagga cctggcaaaa aactttgcgc caagtacctt ggcccctata aagttgtgcg      4920
     agttaaatcg aacaattctt acgatgttga gcgtgaggtg cctggcgagg gccctaagaa      4980
     aaccagttca tgcgctgaat acatgaagcc atggtcctct gtgctgtagt catctgggac      5040
     agatgccttt tcaggacggc cgagttg                                          5067
//
ID   Gypsy-4_AEc-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   22-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AEc_;
KW   Gypsy-4_AEc-I; Gypsy-4_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-261
RA   Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 666-666 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 261 BP; 69 A; 66 C; 69 G; 57 T; 0 other;
     tggggatctt aatctctaca actgcatgcg aattcaagtt acgcgcgctc tctagagcta        60
     ttctctcccc ttcgagcggc gcggacgcta gagctaaggc ggcgacccca tgagagggcg       120
     cagagactga gcgaggacat accagaggag agagacgcgt gagaaaggac attattgttt       180
     ttgagctaag ttaacgagcg tcacattgaa aacctacgcc tcgatacatt catccgttag       240
     ggtcttccac gagatcctac a                                                 261
//
ID   Gypsy-4_AnFu-I repbase;    DNA;    INV; 4323 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4323
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2890-2890 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4320
FT                 /product="Gypsy-4_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDSEGEDFAPATTSAFVADRKRKDNDEVASLKKMVE
FT                 ELQLQLLQTKLTSGEREEKVVTEAKHEVKMVTSDALIGRIPNVRELREVIT
FT                 PFDPKDTNCPDAVMWLTNFEETGEVYGWSEAVKLHCARLSLGGCAKLWWEG
FT                 VRSETKTWQGFKIALEAGFPASRNQAYYHNWMASRKWRTGETPTEYTYAML
FT                 AMGRKGGFSEETTMCYIVNGLSEMWRRARVTVGRVTTITELLKEISWVEGV
FT                 EAVAAQARGTRADRESGGRQRCFTCGSSEHVARDCGQIRGIQGSETRQGDG
FT                 NNRNGTRQRLRCYTCNDVGHISTDCPQRLGNPRGEMRRAGNTVIQKQGQRF
FT                 HVNTVQEEEESVQKEVRAGKVTVKALIDSGAKVSTIREKISGFTGTPRSVK
FT                 GVLYGFGGARVAVKTKLGMKLRLDDVELEAEPWVVPDEAQPVDMIVGRDVM
FT                 VQPGVVVTFRDGQVTFSKEATKMEKEEMNQRAENKSKNQAAIVDDEIDMDG
FT                 DMNTKQEIVRLINEYRDCFAKEMKELGTANGTEMKIELTGHGPVYVKPRKL
FT                 PYARETVAKEIITELLQNDIIEASISPYNSPIVLVQKKNGKWRMAVDYREL
FT                 NARTVKDRYPPPEMERCLNALIGSNVFITLDLYSGYYQIPVEQSCREKTAF
FT                 STPDGHFQFKRMPFGLVNSGAVFQRAIDKMVKGIGQNRIVAYVDDIIIGAR
FT                 TVYEGLELLDKLLTEIRKHGFTINLKKSQFMKTNVECLGVELSKNGIQPGT
FT                 EKCRAITEFPTPNDSKQVQRFLGLAGYFRKFVERFSIIARPLHALTRNETD
FT                 FKWGKQEEQAFRILKEKLTERPLLALYDREANVELHTDASKEGLAGILMIE
FT                 NAGQWKPVSYFSRKTTDLESSYHSFDLEVLAVVASVERFRQYLLGRPFVVK
FT                 TDCSAVRDTYVKREMNARIARWFLKLQEYNFRIAHRVGKSMGHVDALSRGA
FT                 VESPEAEPTVAEKILAIEADTEDFLASMQRQDEKIASIMERLQNPVTNDAE
FT                 KQIHDNYRLEQQRLMRRVEGESKWVVPVRVRWRIVRAYHDEMGHFGVDRVL
FT                 ETLRKRFWFPKMRKYVQGYIEACPKCAYNKKKTGRPEGYMHPIPKEPVPFH
FT                 TVHMDHLGPFVKSARGNQYLLVMICGYSKFAILKAVSSTKTGPVMRFLEEV
FT                 AAIFGTPSRIITDRGTAFTSKIFEEYCVANASQHVKVAVGTPRANGQVERY
FT                 NRTILTALRCSIEEDSRRWDEKLPQIQWALNNTQNTTTKRNPSELVMAYCP
FT                 RDVHQNIIALILHDEDDNRTQGVDEIRRKVTEETIREQQKQKKYYDKKRTV
FT                 PQTYEVGDMVLVERDLLATGESRKLEAKYKGPYWIVEKLPNDRYVIEDIPG
FT                 AQRTQRPLRTVYAVDRIKRWGKHPMLETDEIDDGYMDKEIARDSDINVVS"
XX
SQ   Sequence 4323 BP; 1493 A; 814 C; 1188 G; 828 T; 0 other;
     agctgtagac aggatcgtct aataaagtgc aagcgataag tgcgttagtg tacaagcgtg        60
     ttagtgtgta tcacgagtac aatgagtgat agtgaaggag aagattttgc accagctaca       120
     acctcagcgt ttgtagccga tcggaagaga aaggataacg acgaagtggc gtcattgaag       180
     aaaatggtgg aagagcttca gctacaactc ttgcaaacca agctaacgag tggtgaacgg       240
     gaggagaaag tggtgaccga agcaaaacac gaggtgaaga tggtgaccag tgacgcgtta       300
     atagggagaa tcccgaacgt aagggagcta cgagaggtca taaccccgtt tgaccccaag       360
     gacacgaact gtccagacgc cgtaatgtgg ttaacgaatt tcgaggagac cggcgaggta       420
     tacggttggt cagaggcggt gaagctgcac tgcgcacggc tcagcttagg tggatgcgcc       480
     aaattgtggt gggaaggtgt ccgaagtgaa accaagacat ggcagggttt caagatcgcg       540
     ctggaggccg gattcccagc gtcacgaaac caagcgtact accataactg gatggcgtcg       600
     agaaaatggc gtaccggaga aacgccaacc gaatatacgt acgccatgtt agcaatggga       660
     cgtaaaggcg gattcagcga ggaaacgacc atgtgctaca ttgtgaacgg gctaagcgaa       720
     atgtggcgcc gagcaagagt gacggtggga cgtgttacga ccatcaccga gttactgaag       780
     gagatctcct gggtggaagg cgttgaagca gtagcggcgc aagctcgcgg cacgcgggcg       840
     gacagagagt caggggggag acaacggtgc ttcacgtgtg gttcgtctga gcacgttgct       900
     cgagactgtg gccagatcag aggcatacag ggcagtgaaa cgaggcaggg agacggaaat       960
     aatcgtaatg gtactaggca gagattacga tgctacacct gcaacgatgt aggacacata      1020
     tctacagatt gccctcaacg cttaggaaat ccgagaggcg agatgcgcag ggcaggaaac      1080
     acggtgatcc aaaagcaagg gcaaagattt cacgtgaaca cggtgcagga agaagaagaa      1140
     agtgttcaaa aggaggtaag agcaggaaaa gtaaccgtta aggcattgat agactctggg      1200
     gctaaagttt ccaccatccg tgaaaaaatt tcaggcttta ccggaacacc acgaagcgta      1260
     aaaggagttt tgtacggatt cggaggagca agggtcgcgg taaaaacgaa gctaggaatg      1320
     aaattacggt tggatgatgt agaattggaa gcagagccat gggtggtacc agacgaggca      1380
     cagccagtag acatgatcgt aggacgagat gtcatggtac aaccaggagt agttgtcacg      1440
     tttcgggatg gacaagtaac attcagcaag gaggcaacaa aaatggaaaa ggaagaaatg      1500
     aatcaaaggg cggagaacaa atccaaaaat caagctgcga tagtagatga cgaaatagat      1560
     atggatgggg atatgaacac gaaacaagag atcgtcaggt taatcaacga atatagagat      1620
     tgtttcgcaa aagagatgaa agaattagga acggcaaatg gaacagaaat gaagatagag      1680
     cttacgggac atggtccagt ttacgttaaa ccgagaaaat tgccatacgc acgtgaaaca      1740
     gtagccaaag aaataattac ggaactacta caaaacgaca taatcgaagc gtcgatctct      1800
     ccttacaata gtccgatagt gttagttcaa aagaaaaatg gaaagtggcg catggccgtg      1860
     gactatagag aactaaacgc gagaaccgtc aaggatcgtt acccaccacc cgaaatggag      1920
     agatgtctca atgcactcat tggatcaaat gtgttcatta cgttagacct gtattcgggg      1980
     tactatcaaa taccagtaga acaatcatgc agggagaaaa cagctttttc gacacctgat      2040
     ggtcacttcc aatttaaaag aatgcctttc gggctagtta atagtggagc tgtgtttcag      2100
     cgggcgatcg acaaaatggt gaaagggata gggcaaaaca gaatagtagc gtatgtagat      2160
     gatattatca ttggcgctcg tacagtgtat gaggggctag agctattgga taaactgcta      2220
     acagaaatac ggaaacacgg gtttacgata aatctgaaga aaagccaatt catgaaaacg      2280
     aatgtagaat gcctgggcgt cgaactttca aaaaacggta tccaacccgg aacggagaaa      2340
     tgtagagcaa taacagagtt ccccactccc aatgacagca aacaagtgca aagattcctc      2400
     gggctagcag gatattttag aaaatttgta gagagattca gcatcatagc aagaccgtta      2460
     cacgcgctga ctaggaacga aacggatttt aaatggggca aacaagagga acaggcattt      2520
     cgaatcctga aagagaaact aacagaaaga cccttactgg ccttatatga tcgggaagca      2580
     aatgtagaat tacatacgga tgcttccaag gaagggttgg caggaatatt gatgatcgag      2640
     aacgcgggac aatggaaacc ggttagctat tttagccgaa aaactacaga cttagaaagc      2700
     agttatcaca gtttcgattt agaagtttta gcggtagtag ccagtgtaga aagatttcga      2760
     cagtatctgc tcggacgacc ctttgtggta aagacggatt gtagcgcggt cagggacaca      2820
     tacgtcaaac gcgaaatgaa cgctaggatt gcaagatggt tcctaaaact acaagagtac      2880
     aacttccgca ttgcgcatag agtagggaag agcatggggc acgtagatgc cctcagtcgc      2940
     ggtgcagttg aatcacccga agcggagcca acagtggcag aaaaaatatt agcgatagaa      3000
     gcagatactg aggattttct agcatctatg cagaggcagg atgaaaagat agctagcatc      3060
     atggaaagat tacaaaatcc agtcaccaac gatgcagaaa aacaaatcca cgataattat      3120
     aggctggaac aacagaggct tatgagaagg gtagaggggg aatccaaatg ggtagtaccg      3180
     gtcagagtac gatggaggat agtacgcgca taccacgatg aaatgggtca tttcggagta      3240
     gatcgagtac tagaaacgct aagaaaaagg ttctggttcc cgaagatgcg aaaatacgta      3300
     caggggtaca tagaagcatg cccgaagtgt gcgtataata aaaagaagac agggcgacca      3360
     gaagggtata tgcacccaat accaaaggag ccagtaccgt tccatacagt acacatggac      3420
     catttaggtc ctttcgtgaa atcagctagg gggaatcaat acttactcgt aatgatatgc      3480
     gggtactcga agtttgcgat actgaaagca gtgagttcaa caaaaacagg gccagtaatg      3540
     cggtttttgg aagaagtagc ggcaattttt ggaacaccaa gcagaataat cacggatagg      3600
     ggtacggctt tcacatcaaa aatattcgag gagtactgtg tggcaaacgc aagccaacac      3660
     gtgaaagtag cagtaggtac accgcgagca aacggacagg tagagcgata caataggact      3720
     atactgacag cactgagatg ctctatagaa gaagacagcc gaagatggga tgaaaagtta      3780
     ccacaaatac aatgggcttt gaataataca caaaatacca caacgaagcg aaacccaagt      3840
     gaactagtca tggcttactg ccccagggac gtacaccaaa atataatcgc gttaatactc      3900
     cacgacgagg acgataatag gacgcaagga gttgacgaaa taaggcgcaa agtcacagag      3960
     gaaacgataa gggaacaaca aaagcaaaaa aagtattacg ataaaaaacg cacggtaccc      4020
     cagacctatg aagtgggcga catggtatta gtagagcgtg acctattagc aaccggagag      4080
     agtaggaagt tggaggcgaa atataaggga ccatattgga tcgtagaaaa attgccaaat      4140
     gaccgatacg taatcgaaga cataccagga gcccaaagaa cccaacgacc cctaagaacg      4200
     gtatacgcag tcgacagaat aaagcgatgg ggaaaacacc caatgttaga aacagatgag      4260
     atcgatgacg gctacatgga caaggagatc gctagggaca gcgatataaa tgtggtgtcc      4320
     gat                                                                    4323
//
ID   Gypsy-4_AnFu-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-164
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2956-2956 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 164 BP; 62 A; 27 C; 38 G; 37 T; 0 other;
     tgtaatcagt atttcgaaac tcacaggagt aaccctgctt cgaaaaaacg ataagagcga        60
     taggaccgaa gtagcgcggt gagaaaaggt attagtaaaa cagcgatagc aagcgaagga       120
     cgtgtgtacg atatttagct ccaaaaataa attttactgt taca                        164
//
ID   Gypsy-4_AnMe-I repbase;    DNA;    INV; 4207 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4207
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6816-6816 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1043
FT                 /product="Gypsy-4_AnMe-I_1p"
FT                 /translation="MTTNNEVEQNGALIVKSEASEATVIAKINFPDFDQAD
FT                 IETWFICLEASFHVNGIKLDKFKFNTVIVALGSRAKYVHSVIKQCQNENNS
FT                 NKYETLKEAVIAHFQPSETQRLSSLLSGMSLGDQKPSVLLSEMRRLGGAGC
FT                 TDNILTNLWLRALPNTTRAIIAAMPTATLDDQAKVADKILEAPREQISSIQ
FT                 YRGDGATINSLEQRIEALTQRLDEALTGNPHRRNRFTNTRSRSCSRRDGTP
FT                 ARNKRGWICWFHFRHGSQARKCEKQKADNPNVPCIFFDGKIEVYSRPRPM"
FT   CDS           977..4186
FT                 /product="Gypsy-4_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QPERTVYFFRREDRGVLSTATDVSANPQTAHAAAASA
FT                 SNPASATDNDSSDNNRLQRIHIHDPKTSNRFLIDTGADVSVVPPTLRERNS
FT                 PKHSQQLFAANGTPIHTYGTKRITVDLGLRRSFVWVFVIADVKSPIIGADF
FT                 LKHYDLLVDLRRCKLIDNTTRFEIENINAVTEPAITTFDMNSPFSDILNEY
FT                 KDITVLNMKHKPTEANTVHQIITNGPPVFCRPRRLPIDKLKEAKAEFQFLM
FT                 EQGICQPSKSNWASALHLVKKSNGKWRPCGDYRNLNAITIPDRYPVPHIQD
FT                 FSNILHGKTIFSCIDLQRAYHQIPVAPEDVPKTAITTPFGLFEFKYMTFGL
FT                 RNAGQTLQRHLHAILGDLDYVFPYVDDLCIASENIELHKRHLREVFERLKQ
FT                 NGLVINAAKCQIGQQSVDFLGHRVTAEGIQPKLAKVQAIIDIPRPINAKEL
FT                 KRFLGAINFYRRFIPRAAENQRILQAMISGNIKNDTTSLEWNDTTNDAFLK
FT                 CKQELSNATLLAHPSPEGTLALDVDASNTCIGAVLHQITEKGLQPLAFFSR
FT                 KLSESQQKLSTYDRELIAMYEAVKHFKDTVQAREFCIYTDHKPLVTAFQQR
FT                 PEKATPTQQRRLSYISEFTTDIRHVAGDANKVADMLSRINTITAIDTIDYN
FT                 RMAKEQKTDPELKHFLENPPTNTCVHLKQLKSPLADTPIYCDISTEAIRPF
FT                 VPKQFRKQILEKMHSTSHPGIRATTRLVSDRFIWPSLRRDCKAFVTNCMPC
FT                 QKSKIQRHNKSPIDQIKTPDRRFAHIHMDLIGPLPPSEGNLYCLTIIDKFT
FT                 RWPEVYPIPNMTAHTVARAFISGWISRFGVPTNITTDCGRQFESELFRTLT
FT                 SMLGITHLRTTPYHPQANGQIERTHRQLKAAIMCHQNSRWTEVLPIVLLGM
FT                 RSSLKADLNATVAELIYGVPLRLPGEFFVPSEDKRATSEFVTQLKQQMLKI
FT                 APKPTSNHNTREAPFIQKEIATCTHVFIRVGAIKPPLTQPYDGPYRVVRRK
FT                 KKVFIVEVNGKNVPVSIDRLKAAFTQAEDEDSPAKNDQHSNSPPIVDPPYK
FT                 TRSGRRVVIPNRY"
XX
SQ   Sequence 4207 BP; 1316 A; 1097 C; 842 G; 952 T; 0 other;
     actggtgacc ccgactgaac aaatatcaaa atacgtttat ccgaaacgta acgtagcaat        60
     cgcgagtaat catttcacag tgacagcttt tcatttgcat ttcgctcgcc gcgtttttaa       120
     tttcaataat cgaacattga ccatcaagtg tcgaccgcgt gcgaaacaaa atgacgacca       180
     acaatgaagt tgaacaaaat ggtgcgctga ttgtgaaaag tgaggcaagt gaagctacag       240
     tgattgccaa aataaatttt ccagacttcg accaagcgga tattgaaacc tggttcatat       300
     gcctcgaagc ctcttttcac gtcaacggca ttaaactgga caagtttaag ttcaacacag       360
     tgatcgtcgc tcttggttca cgagcaaaat acgtgcattc agtaatcaag cagtgccaaa       420
     acgaaaataa cagcaacaag tacgaaacac taaaggaagc tgttatcgct catttccaac       480
     catcggaaac acagcgactg agcagtttgc tgtccggcat gtcccttgga gaccagaaac       540
     ccagcgtttt gctgtccgag atgcgccgct taggaggagc aggttgtacc gacaacatcc       600
     tgaccaactt atggttgcga gccctgccca acacaactcg tgccatcatc gctgccatgc       660
     caaccgcaac actggacgac caggcaaaag ttgctgacaa gattctggag gcaccccgcg       720
     agcagatttc ctctattcaa tatcgaggag atggagctac gataaattcg ctggaacaac       780
     gtatcgaagc ccttacgcaa cgcttagatg aagcactaac aggtaacccc cacagacgga       840
     accgttttac taatacacgt tctcgttctt gcagccgacg ggatggaacg ccagccagaa       900
     ataaacgtgg ctggatctgc tggtttcatt tccggcacgg ttctcaagct cgcaagtgcg       960
     aaaaacagaa ggctgacaac ccgaacgtac cgtgtatttt tttcgacggg aagatcgagg      1020
     tgtactctcg accgcgaccg atgtaagcgc taacccacaa accgcccacg ccgctgctgc      1080
     atctgccagc aatcctgcgt ccgccacgga caacgacagc agcgacaaca atcgcttaca      1140
     acgcatacac atacacgacc cgaaaacatc gaatcgattc cttatcgaca ccggagcgga      1200
     cgtttctgtt gtcccaccaa ccttaagaga acgtaactca ccaaaacact cacaacagct      1260
     gtttgccgcg aacggtaccc caatacacac gtacggtacc aagcgtatca ctgtcgatct      1320
     cggcctacga cgatcctttg tgtgggtgtt tgtcatcgca gatgtaaagt cgccaatcat      1380
     aggtgccgat ttcttaaaac attacgatct ccttgtcgat ctccggcgat gcaaactgat      1440
     cgataacacg acccgttttg aaatcgaaaa cattaacgca gtgaccgaac ctgctattac      1500
     cacattcgac atgaattcac cgttttctga cattcttaac gaatataagg acataactgt      1560
     tttaaacatg aagcacaaac caaccgaggc aaacaccgtc catcagataa tcactaacgg      1620
     accacccgtt ttttgtcgac cacgacgatt gcccatcgac aaattaaaag aagccaaggc      1680
     tgaattccaa tttttaatgg aacaggggat ttgtcaaccc tctaaaagca actgggcaag      1740
     cgctttacat cttgtaaaaa aatcgaacgg caagtggaga ccgtgcggag attatcggaa      1800
     tcttaacgcg atcaccatac cagaccgata cccagtaccg catattcagg atttttcgaa      1860
     tatcctgcac ggcaaaacaa tattttcatg tattgactta caaagggcat atcatcagat      1920
     tccagtagcc ccagaagatg tcccaaagac ggccataacg acccctttcg gacttttcga      1980
     atttaaatac atgacctttg gcttaagaaa cgcaggacag actctacaaa ggcatttgca      2040
     cgctatctta ggcgacctcg attatgtttt tccttacgta gatgatctat gcatagcttc      2100
     agagaacata gaactgcata aaaggcacct tcgtgaagtt tttgaacgct tgaaacagaa      2160
     tggtctcgtc ataaacgcag ctaaatgtca aataggccaa caatctgtgg attttctcgg      2220
     acacagagtc acagccgagg gtatacaacc gaaactcgcc aaagttcaag ccattattga      2280
     tatacctaga cccattaacg ccaaggaact gaaaagattt ctaggagcca taaactttta      2340
     tcgccgattc ataccacgcg cagctgaaaa ccaacgcatc ctacaggcaa tgatatcagg      2400
     caacataaaa aacgacacga ctagcctcga atggaatgac actaccaacg acgcattcct      2460
     aaagtgcaaa caggaactat caaatgctac tctgcttgca cacccttcac ctgaaggaac      2520
     actagccctt gatgtggatg cctcgaatac gtgcatcggt gccgttcttc atcagatcac      2580
     cgaaaaggga ctacaaccac ttgcattctt ttcacgcaag ctgagtgaga gccaacaaaa      2640
     gctaagcacg tatgatcgcg agctaatcgc gatgtacgaa gcagtaaagc actttaaaga      2700
     taccgtacaa gcccgagagt tttgtattta tacagatcat aaaccgctcg tcaccgcttt      2760
     tcagcagcgc ccagaaaagg ctacacctac acagcaacgc agacttagct acataagcga      2820
     atttacaacc gatattcggc atgtagcggg tgatgcgaat aaagttgccg acatgctgag      2880
     ccgcattaac accattactg caatagatac aatagactac aatcgcatgg ctaaggaaca      2940
     gaaaaccgat ccagaactca agcatttcct agaaaaccca ccaacaaata cttgcgttca      3000
     tcttaaacaa ttaaaatcac ctctagccga tactcccata tattgcgata tatccacaga      3060
     ggcgattcgc cctttcgtac caaagcaatt tagaaagcag attttagaaa aaatgcatag      3120
     cacatcacac cctggtatac gtgctaccac tcgtttggta tctgaccgct tcatttggcc      3180
     ttctcttcgt cgagattgca aagcatttgt aacgaattgt atgccatgcc agaaatcaaa      3240
     aatacaacgc cataacaaat cgccaattga tcaaatcaaa acgcctgatc gccgattcgc      3300
     acacatccat atggatctca taggaccctt accgccatct gaaggcaatt tatattgtct      3360
     taccatcatc gataaattta ccaggtggcc cgaggtttac cctataccta acatgaccgc      3420
     acacaccgta gcgcgtgctt tcataagtgg ttggatttcg cgatttggtg taccgacgaa      3480
     tattacaacc gactgtggca ggcaattcga gtcagagctt ttccgtaccc ttacaagtat      3540
     gcttggcata acacacttgc gcactacccc ataccatccg caagcaaacg gacaaatcga      3600
     gcgtacacat cgacagctca aggcagctat aatgtgccac caaaactcga ggtggactga      3660
     agtcctacct atcgtcctct taggcatgcg atcttctctg aaagcagatc taaatgcaac      3720
     ggttgctgag cttatttacg gcgtaccact tcgactacct ggtgaatttt tcgtgccaag      3780
     cgaagataag agagcaacat ctgagtttgt aacacagctg aagcagcaaa tgttgaaaat      3840
     agcaccaaaa ccaaccagca accacaacac acgagaagct ccattcatcc aaaaggagat      3900
     agcaacatgc acacacgttt tcatccgagt gggtgcaatc aaaccgcctc taacgcagcc      3960
     gtatgatgga ccataccgag tggtccgacg gaagaaaaag gtttttatcg tcgaggtaaa      4020
     cggaaagaac gtcccagttt ccatcgaccg ccttaaagca gcatttaccc aggcagagga      4080
     tgaagattca cccgcgaaaa atgatcagca ttccaattca ccaccaattg tagaccctcc      4140
     gtacaaaaca cgctcaggac gccgtgttgt gattccgaac cgctattaaa atctaagggg      4200
     gaagtag                                                                4207
//
ID   Gypsy-4_AnMe-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-263
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6807-6807 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 263 BP; 95 A; 63 C; 43 G; 62 T; 0 other;
     tgtggtgaca caacgtgtaa ccgcttctta agacgcgtta cgcatagcaa acacatacag        60
     aacgcatcgc gcgtaacgtg tagcactctt tcactcacta acactaacaa tagcaaacga       120
     ttgcactact accattagat ataggattag aattatattt tatattagaa ataaaatcat       180
     tctacgagtg accaccaagc gagcaacaag ccaactcatt acgtgcaccc gaaagtagtg       240
     aaatcagcta gaacattccc ata                                               263
//
ID   Gypsy-4_AnSt-I repbase;    DNA;    INV; 4447 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4447
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 789-789 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..4434
FT                 /product="Gypsy-4_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSPEETPITEEQRRLSQNGILNAGFINLQPAQHVSS
FT                 DPTPLQQTLQLLQQQLVQQQQQMAQQQQLLSQLVQQQQQQLQPHIPDQQPV
FT                 SKPSNPELILEALAGNISEFRYDPEAGITFASWYTRYVDLFREDASRLDDA
FT                 AKVRLLGRKLGTAEHARFSNFILPRAPRDFTFNEMVDKLSVLFGKMESVLS
FT                 KRFKCFNITKMRTEDLLAFTCRVNKACVDAEFSSMTEEDFKCLILVCGLKD
FT                 ESVQDIRMKLLAAIEDRKNATLEQLAADCQRLMRVKADSAMIATDASERVH
FT                 AVQAKGSRHFYRNNTDRHPKSGPRSETSKPRTPCWLCGALHWTRECTYRAN
FT                 KCRDCGRTGHREGFCSSAHRRKARPRFDHRRAVSSRVVRVNVCSVQQNRKY
FT                 VNLLIGEKPARLQLDTGSDISVISYRLWKQLGKPHLNPPKVRAKAASGDVF
FT                 GLEGEFEANVEINNMIKRATIRVSKADLSLLGADLIHLFGLATIPMDNFCN
FT                 HIRTAEPRSWEEKFPTVFHGTGLCTKAQIHLQLRQDSQPVFRPKRPVAYAM
FT                 EDAVNKELDRLENLGIITPCDFSDWAAPVVVVRKANGKLRLCGDYSTGLNA
FT                 ALHPHEYPLPLPQDIFSKLARCIIFTQIDLSDAFLQVEIEEKSRPLLTINT
FT                 HRGLYHYNRLPPGIKVAPGAFQQIMDKMLAGVNGVSAYMDDVIVGGRTQEE
FT                 HDSALEETLKRIMDYGFTIRKEKCAFNKPEIRYLGHIIDSRGLRPDPAKID
FT                 AIKQLPPPKDVTGVRSFIGAINFYAKFIPNMRNLRYPLDRLLLDGSSFQWT
FT                 SDCQKVFDQFKALLSSELLLTHYDPKRDIVVSADASSVGLGATLSHKYPDG
FT                 SLKVVQHASRALSKAEAGYSQIDREGLAIIFAVTKFHRMIFGRHFTLQTDH
FT                 RPLVRIFGSKKGIPTYTANRLQRFALTLQLYDMDIEYIPTGSFGNADVLSR
FT                 LIQHHTKPEAEYVIASVELEEDLRSVAVNALSSFPLCFRDVQVATQADPLL
FT                 RKVHKYVQDGWPHDDSFGAELARYHNRKESLSTVEGCVLFGERVVIPEKLR
FT                 SRCLVQLHKGHPGMQRMKAIARSFLYWPMIDDDIMSYVASCGSCSAAAKAP
FT                 PRATPAAWPTPTGTWRRVHVDYAGPWEGFYFLVVVDAFSKWPEIYKTSSTT
FT                 TSATISMLRNIFARFGMPETLVSDNGPQFTSSLFEEFCNSNGIDHVTTAPF
FT                 HPQSNGQAERFVDTLKRALRKIQSDETSLDEALELFLMAYRSTPNAQLSQQ
FT                 KTPAEEMFGRPIRTALELLRPPSSHSLSAPSSISVRRFQPGELVSTKSFHR
FT                 NSWKWIPGKIVRSCGRVMYDVIADSGRLLRRHINQIRRRVAGSATQKHQIP
FT                 LDVLLAEWPSFSRHEPTQPASETSRCESSAPPPSSFALTSLAPSAPTDVPV
FT                 TTSQSXHPPELSNRYKGRTSQRLLDLPRRSSRVRRLPRRLGAYQLN"
XX
SQ   Sequence 4447 BP; 1192 A; 1170 C; 1114 G; 970 T; 1 other;
     gtggcgacga gaattagtgg aaacgatcga cgtcaagcag agaaacgccg cagaatgtcc        60
     agcccagaag agacgcctat caccgaggag cagcgtcgtc tctcgcaaaa tggaatcctt       120
     aatgccgggt tcatcaacct ccagccagcg cagcacgtgt catcggatcc aacgccgctg       180
     caacaaacgc tgcaactttt gcaacagcaa ctggttcaac agcagcagca aatggcacag       240
     caacagcagt tattatcaca gctcgtgcaa cagcaacaac agcaactgca gccacacatc       300
     ccggaccagc aacctgtgtc aaagccgagc aacccggagc tgatattgga agccctagcg       360
     gggaatatta gtgagttccg gtacgatcca gaggcgggaa taacttttgc atcatggtac       420
     acacggtatg tagacctgtt cagagaagat gcttcccgct tggatgacgc cgccaaggtt       480
     cgactcctag gacgcaaact tgggaccgcc gaacacgccc gttttagcaa cttcatattg       540
     ccgcgtgcac ccagagattt cacctttaac gaaatggtgg acaagttaag cgttcttttc       600
     ggcaaaatgg agtcggtgtt aagcaagcgc ttcaagtgtt ttaatataac gaaaatgcgc       660
     accgaggacc tgctagcatt tacctgtcga gtgaacaaag cgtgcgtcga tgcggaattt       720
     tcttcaatga cggaggaaga ttttaaatgc ctcatccttg tgtgtgggtt gaaggacgaa       780
     agcgtacagg acataaggat gaaattgtta gccgccatcg aagacaggaa gaacgccacc       840
     ttggagcagc tagcagcgga ttgccagcga ttaatgcgcg tgaaagcgga tagtgcaatg       900
     atcgctacgg atgccagtga gagagtgcac gcggtgcaag ctaaaggcag ccgtcacttt       960
     taccggaaca acaccgaccg tcaccccaaa tcaggcccgc gaagcgaaac ttctaaaccc      1020
     cgtaccccgt gttggctttg tggtgccctt cattggaccc gcgaatgcac ttacagagcc      1080
     aacaagtgcc gtgattgtgg acgtacgggt catcgagaag ggttttgcag ctctgcccac      1140
     cgacgcaaag cacggccgcg gttcgatcat cgtcgtgccg tatcatctcg agtagtacga      1200
     gtcaacgtgt gcagcgtgca gcagaaccgc aagtacgtca acttactgat cggagaaaaa      1260
     ccagctcgac tacaactcga caccggatcg gacatttcgg tcatcagcta tcgtctatgg      1320
     aagcaactgg gtaagcctca ccttaaccct ccgaaggtaa gagcaaaagc agcttctgga      1380
     gatgtattcg gccttgaagg tgagttcgaa gccaacgtgg aaataaacaa catgatcaag      1440
     cgagcaacaa tccgtgtgtc aaaagccgat ctgtcgttgc tcggggctga ccttattcat      1500
     cttttcggtt tggctacgat cccaatggat aatttttgta atcacatcag aacagcggaa      1560
     ccacgatcat gggaggaaaa atttccgaca gtttttcacg gaacaggcct gtgcaccaaa      1620
     gcgcaaattc atctacagct gcgacaggat agccaaccag tatttcgtcc gaaacgtccg      1680
     gtcgcatacg cgatggaaga tgccgtaaac aaggagctag atcggcttga aaatctgggg      1740
     atcatcacac cttgtgactt ttcggattgg gctgcaccag tcgttgtggt tcggaaagca      1800
     aacggtaaac tacgattatg cggagactat tcgactggat tgaatgcagc gctacaccct      1860
     catgagtatc cgcttccgtt accacaggac attttttcaa agctagcccg atgcattatc      1920
     tttacacaaa ttgatctatc cgacgcattt ttgcaggtgg aaatagaaga gaagagccga      1980
     cccctgctta ccatcaacac gcaccgaggc ctgtatcatt ataacaggct ccctccaggc      2040
     atcaaagtgg cgcctggtgc tttccaacaa ataatggaca aaatgcttgc cggtgtaaat      2100
     ggagtgtccg catatatgga tgatgtaatc gtcggaggaa gaacgcagga agagcacgat      2160
     tccgcccttg aagaaaccct gaagcgcata atggattacg ggtttaccat tcgaaaagaa      2220
     aagtgcgcat tcaacaagcc ggaaatccgt taccttgggc acatcatcga cagccgaggc      2280
     ctgcgacccg acccagccaa gatcgacgcc ataaaacagc tacctcctcc gaaagacgtc      2340
     acaggtgttc ggtcattcat cggtgcgata aatttttatg ccaaatttat cccaaacatg      2400
     cgcaacttac gctatccttt ggataggttg ctactagacg gaagctcgtt tcagtggaca      2460
     tcagactgcc agaaggtgtt cgaccaattc aaagcgcttt tatcatcgga actcttgcta      2520
     actcactacg acccgaagcg tgacatagtt gtttccgccg atgcatcttc ggttggatta      2580
     ggggcaactc tatctcacaa gtacccagac ggatccttaa aagtggtaca gcatgcatcc      2640
     agagcgctca gcaaagcgga agctggttat agccaaatcg atcgagaggg actggctata      2700
     attttcgctg taaccaaatt tcatcgcatg atattcggtc gtcatttcac gcttcagacc      2760
     gaccaccgac cactagtacg catatttggc agcaaaaagg ggattccaac gtacacggca      2820
     aacaggctcc aaaggtttgc acttacgctt cagctgtacg acatggacat cgagtacatt      2880
     ccaacaggct catttggaaa cgctgatgtg ttatcccggc taatacaaca ccacacgaaa      2940
     cctgaagccg aatacgtgat cgcaagcgtg gaactagagg aggacttaag gtcagttgcc      3000
     gttaacgcgc tcagttcatt tcccctatgt ttcagggacg tgcaggtagc tacacaggct      3060
     gaccctttgc tccggaaagt gcacaagtac gtgcaagacg gatggccaca tgacgattct      3120
     ttcggagcag aattggcacg gtaccacaat cggaaggaat ccctctcaac cgttgagggt      3180
     tgtgtacttt ttggggagag agtggtcatc ccggagaagc tgcgttcccg ttgtttagtt      3240
     cagttgcaca aaggacatcc ggggatgcag agaatgaaag ccatcgcgcg aagttttctg      3300
     tattggccga tgatcgacga cgatattatg agctacgtgg cctcgtgcgg atcttgttcg      3360
     gctgccgcaa aagcaccccc tcgagcgaca ccagcggcat ggccaacacc aacgggcacc      3420
     tggcgtagag tacacgtgga ctacgctggg ccatgggaag gtttttactt tttagtcgtt      3480
     gttgacgcct tctccaagtg gcctgagatc tacaaaacat cgagcacaac aacatccgcc      3540
     actatttcca tgctacggaa cattttcgct cgcttcggta tgccggaaac gctggttagt      3600
     gacaacgggc cccaatttac aagcagcctg tttgaggagt tttgcaacag caacgggatc      3660
     gaccacgtca ctacggcgcc attccaccca caatcgaatg gtcaggcgga gcgttttgtc      3720
     gatacgctca aacgagcgct gcggaagatc cagagcgacg agacatccct ggacgaagcg      3780
     ctggaacttt tcctcatggc atacagatcg acaccaaacg cgcagttgag ccaacagaaa      3840
     actcctgctg aggaaatgtt cggccgcccc atcagaacag cactggagct gttgcggccc      3900
     ccatcgtcac actcattatc tgctccctcc tctatttcag tgcggagatt tcaaccaggc      3960
     gagctcgttt ctacaaaatc gttccaccga aactcttgga agtggatacc tggaaagatc      4020
     gtgcgaagct gtggaagagt tatgtatgat gtcattgcgg acagcggacg tttacttcgg      4080
     cgccacataa accaaataag gcgacgtgtc gctggcagtg caacccagaa gcatcagatt      4140
     ccgctcgacg tgctgctagc ggaatggcct tcgttttccc gacatgaacc gacccagccg      4200
     gcatcggaga caagcaggtg cgaatcgtcc gcgccaccac cgtcatcgtt cgcattaaca      4260
     tcactagcac cgagcgcccc gacggatgtc cctgtgacga catcccaatc gttwcatcct      4320
     cccgagcttt ccaaccgtta caaaggtagg acctctcagc ggctgttaga tttgccacgc      4380
     aggtcttctc gagttagaag acttccgcgt cggcttggag cctatcagct caattagccg      4440
     ggggaga                                                                4447
//
ID   Gypsy-4_AnSt-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-298
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 778-778 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 298 BP; 71 A; 63 C; 81 G; 82 T; 1 other;
     tgttgcatcc tgattagagc gtagcctaac cgtgcgctct atgccgtctg ggaactgaca        60
     gcatccgatg tgtagcggat atggctgtct cgctctagca acgatcgggg atgcgcttta       120
     agagcgtaga agttcgtgag taaggatcat gcggatcctk gggggactct ctgctcatca       180
     cggttccggg acagacgtgg ctcgcgcgcg gcctcgtatt ttacgtttgt tttaatgttc       240
     gttttaattg tgttttaagt gaaataaaag aaataagtac cagtgcacaa acacaaaa         298
//
ID   Gypsy-4_BM-I repbase;    DNA;    INV; 3975 BP.
XX
AC   nscaf3031;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_BM_;
KW   Gypsy-4_BM-LTR; Gypsy-4_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3975
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 983-983 (2010).
XX
DR   Genome; nscaf3031; Positions 1896751 1900725.
XX
CC   Positions [3030-3584] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1464..3974
FT                 /product="Gypsy-4_BM-I_1p"
FT                 /translation="MIRDGTTRPSDSPWASALHLAPKKNGWRPCGDYRALN
FT                 ARTIPDRYPIRHIEDYAHRLAGSSIFTKIDLVRAYNQIPVAPEDIAKTAIT
FT                 TPFGLIEFPFMSFGLRNAAQTFQRFLDEVLRGLDCCFSYIDDILVFSRSRS
FT                 EHLEHLEKVFKRLQDYGLVINEGKCKFGQSEMDFLGFHISADGTRPLEDKV
FT                 AIIKEFSPPKTVSSLRRFLGMLNFYRRFIPNAAADQAPLHGMLSGSKVKGS
FT                 HPLTWTPELLEAFNTCKASIARSTLLAHPAMNAPLALVTDASNSALGAVLQ
FT                 QSVEGQWQPLAFFSKKLKKAQQLYSAYDRELLAIYEGVKHFRFMVEGRHFV
FT                 IYTDHKPITYTFYQNSQKCSPRQFNHLDFMSQFTTDIRFISRKDNIPADTL
FT                 TRIEAVSSPPDLQQLARSQENDNELQELLSKRSSSSLKMEQIPIPGTNVTL
FT                 YCDVTLSRPRPFITKELRRQVFNSIHTMSHPGTKATTKMVMSRFIWPSARR
FT                 DCRTWTRACEACQKSKIHRHISSPLGDFQLPQSRFSHVHIDLIGPLPSSND
FT                 YKYCLTAVDRFTRWPEVMPLYDITAETVAKAFYDMWISRFGSPERVTTDLG
FT                 RQFTSHLFKALTNLCGIQLCHTTAYHPSANGMVERFHRTLKTAIMAHGERR
FT                 WTNILPVVLLGIRTAWKEDLRCSVAELVYGEPLRIPGEFLHTPKADQLTPS
FT                 DFVSQLRKHMALLRPQAASRHSSTSIFVHDDLKTCKNVFIRKDALRASLDP
FT                 PYTGPYRVLARSDKTLTVELNRGPVKVSIDRVKPAYITTDSTSTTVIAPEP
FT                 AIKNPDGQRPVRTTRSGRIIKFQSFPGLPDSKGGR"
XX
SQ   Sequence 3975 BP; 1100 A; 1020 C; 912 G; 943 T; 0 other;
     tagtggtgac cccgaagtga tacaatggca caaggaagta aggataacgc cgccgcggcc        60
     gccgccgaaa ctttattaaa cgtcgaatcg gatccggtcg taagccgtgt agcggtgcgc       120
     ttaccgccat tttggcccga ggaccctgaa gtttggttcg tgcaggcgga ggcacaattc       180
     caaatatccg gtatcaagga agatactaca aagttttacc acattatctc gcagctggaa       240
     cagaggtaca tccgcgaaat taaagatatc ataaaaaatc cacccgctac cggcaaatac       300
     gaaaaattga aacaagaact tattaagcgt ttgtcaattt cacgagagca ccaaattacc       360
     cagctgcttt cccatgaaga actgggtgat agaaaactgt cgcaattctt acggcatttg       420
     aaaactctcg ccgccaacga agtttcagac gaatttttac gtagtatgtg gtcgagccgc       480
     ttgccacctc acatacaagc tataattgtt tcgcatacta tcggcacctt ggaagatgtt       540
     gcggagctag cagacaagat atacgaggtc gtgacgccgg cgccgttaca acaagttgcg       600
     agtgcagccg ccggttccag tagcttcgat ggcttagtga agcgcctcga cgagatgatt       660
     gcgtcacgag ttaagacaga gttgcaacag cagatcgctc agataaactt gaatcgtcgc       720
     agccgttctg tatcgcgtga cggctaccgc gcgaggagaa ggagccgaag ccggacgcca       780
     ggcgtgtgct ggtaccacaa cactttcgga gacaaggcca ggaagtgcac aaccccctgc       840
     aactataagg gaaacttaca aggcagttcg tagaagcggc ggacgactgc cagagtgtta       900
     ctagtcgcct ttttgtcact gacaggaaga caaaggtgca gtacttaatc gacaccggct       960
     cggatctttg cgtactgcca cgtcggtttc tgcgtcagtc acgggaaccc gcggactaca      1020
     agctcaccgc tgctaatgga agcgttatca acacctacgg aacctcatct atacatttgg      1080
     acctagggtt gcgacgcgac ttcacctgga attttgtagt tgccaacgtg aacggaccaa      1140
     tcatcggagc tgattttatt tcacattatg gtttactcgt agattgcaag aacggacggt      1200
     tgcttgacaa cgtgactacc ctttcaacaa ccggcatcgt tcgtgggtgt gaacaacata      1260
     gcatcaaggc gatatcaggt actacagaat ttcataaact tttatctaaa taccctgact      1320
     taactaagcc ttctggaata ttccgagaga tcaagcactc gactatacac tacatacata      1380
     caacacctgg ccctccagta ttttgcagac cgcgacgcct ggctcctgac cgtctcaaga      1440
     ttgcgaaaga gcagttcgac gatatgattc gggatggtac aacgcgacct tcagactcac      1500
     cttgggcatc ggcgttacac ctggcaccta agaagaatgg atggagaccc tgtggggatt      1560
     atcgcgcact caacgcacgc acaatacctg acaggtaccc catcaggcac atagaggact      1620
     atgcacacag gctggcgggt agctcaatat ttacaaaaat tgacctggtt cgggcctata      1680
     atcaaattcc cgtggctccc gaagacatcg cgaagaccgc tatcacaacc ccattcggat      1740
     tgatagaatt cccatttatg tcttttggac ttaggaacgc agctcaaact ttccagaggt      1800
     tccttgacga agttttacga ggcctggact gctgtttctc gtatattgac gacattttag      1860
     tcttttctag aagcagatcc gaacacctgg aacacctgga aaaagttttc aaacgcctgc      1920
     aagactatgg cctcgttatc aacgaaggaa agtgcaagtt cggccaaagc gagatggatt      1980
     ttctcggatt ccacatttcc gcagacggta cacgcccatt ggaagacaag gtagcaatta      2040
     taaaggaatt ttctcctcca aaaaccgtta gcagtttacg tagattcctt ggaatgttaa      2100
     acttctatcg gcgtttcatt ccaaacgctg ctgctgatca agcacctctc catggcatgc      2160
     tgtcgggatc aaaggtcaaa ggatcacacc cacttacctg gacgccggaa cttctcgaag      2220
     ctttcaacac ctgtaaagca agtatagcta gaagtactct cctcgctcac ccagccatga      2280
     acgcgccgct cgctctcgtg acagatgcct caaattctgc cttgggcgcg gtgctacagc      2340
     agtcagtgga aggacaatgg caaccactcg ccttcttctc gaagaaactt aaaaaagctc      2400
     agcagctgta cagcgcctat gaccgagagt tgctcgctat atacgagggc gttaaacatt      2460
     tccgttttat ggttgaaggc agacacttcg tcatttatac ggatcataaa cccatcacat      2520
     acacctttta tcagaatagc cagaagtgct cgcccagaca gtttaaccac ctcgatttca      2580
     tgtctcaatt caccacagac ataaggttta tatcgcggaa ggataatata cctgcggaca      2640
     ctttgacgcg cattgaagcc gtatcatcgc caccggactt acaacagctt gctcgttcac      2700
     aggagaatga caacgagctc caggaactcc tctcaaagcg ctcatcttct tcgttaaaga      2760
     tggaacagat acctatacct ggaacgaacg ttactttata ctgtgacgtc actctgtcga      2820
     ggcctcgtcc ttttataaca aaggagttgc gtcggcaggt cttcaactca attcatacca      2880
     tgagtcaccc tggtacgaaa gcgacaacca agatggtaat gagtaggttt atttggcctt      2940
     cagctcgacg ggattgtcgt acttggactc gggcctgcga agcctgtcag aaatcgaaga      3000
     tccacaggca tatttcatct ccgctgggtg atttccagtt accgcaatca cgtttcagcc      3060
     acgtacacat tgatttgatt ggaccgctac catcttcgaa tgactacaag tactgtctta      3120
     cagcagtaga caggttcaca agatggccag aggtaatgcc actatacgat atcacggctg      3180
     aaacggtggc aaaagctttt tatgatatgt ggatctcacg attcggttct ccggaaagag      3240
     taaccacgga tttgggtcgc cagttcacat cccatttgtt caaagcactc acaaacctat      3300
     gcgggatcca gctatgccac acaaccgcat atcacccatc tgcgaatgga atggtggaga      3360
     gattccatcg taccctaaag accgcgatca tggcacatgg cgagcggaga tggacgaaca      3420
     ttttacctgt tgttttgctt ggaataagaa cggcttggaa ggaagatctt cgttgctccg      3480
     ttgctgaatt ggtttacggc gagcctctgc ggatacctgg cgagtttcta cacacaccca      3540
     aagctgatca gttgacacca tcagacttcg tctcacaact caggaagcac atggcattac      3600
     tgagacctca ggcagcatcg cgacactctt caacatctat attcgtacat gatgatctaa      3660
     agacgtgcaa gaacgttttc ataagaaaag acgctttacg agcttcgcta gatccgccgt      3720
     acactggccc atatcgtgtg cttgccaggt ccgataagac cctcactgtt gaattaaaca      3780
     gaggaccagt gaaggtctct attgatcgcg taaagcctgc ctacatcaca acggactcaa      3840
     ccagcaccac ggtaatagca ccggagccgg cgattaaaaa ccctgatggt caacgccctg      3900
     ttagaacaac aaggtcaggg cgcataatca aattccaaag ttttccaggt cttccagact      3960
     ccaagggggg tcgtg                                                       3975
//
ID   Gypsy-4_BM-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   nscaf3031;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_BM_;
KW   Gypsy-4_BM-I; Gypsy-4_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-281
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 984-984 (2010).
XX
DR   Genome; nscaf3031; Positions 1896470 1896750.
XX
SQ   Sequence 281 BP; 75 A; 86 C; 69 G; 51 T; 0 other;
     tggcggcaca tcactagccg tgtgtgcggc caccactagc acaaaaaccc gtccaggcga        60
     cagcggtgtg cggggacgag agcgggtaac gcgcagagga acctgctccc agtcggccgc       120
     cgagagcgca gtgcgctacg aaacaactcc aagatcgaac ctacgcagct ctgctcgcac       180
     gcgcatacaa atattatatt tctcgtctcg aatcgaataa aacgcattaa agtcagttta       240
     gttcttattg caacgacgcc ttcccgctca cacaagtacc a                           281
//
ID   Gypsy-4_BrCo-I repbase;    DNA;    INV; 5096 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-5096
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1404-1404 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4065
FT                 /product="Gypsy-4_BrCo-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MANEDELPFQNAQDNVQQNGEAQQDAQQNAQQNVQPN
FT                 AQQNNAVNRIQVRVPPFWKQNPQLWFRQLEAQFANSNIVSDLTKFNTIVGV
FT                 VESDILTSVSDIVLNPPVGNLYETIKQRLIKEFEDTENKKLKNLFSEIAIG
FT                 EMKPSSLLRRMRELSCGKVGDDLLKTLWLQRLPVNIQTVLATSSDNLTQLS
FT                 VTADIMFDITEAASIQAVSNNQVNQISDLVNVVDRLEGKIESLKEEFLKPG
FT                 KSNQRSARNRQTTPVRAPSEANKDFCFYHKSFGNKARKCKEPCSYNDSKTN
FT                 QEYRPNCSVISQAPNISRLFVSDRNSGRDFLIDTGADLSVLPPTSREKGNV
FT                 PCLFKLYAANGSLIKTYGSKTVTLNLGLRRPIRWVFIIADVRSPIIGSDLL
FT                 KKYDLLIDVKNNKLVDNLTSISIHGKIPQNNSGTQIKSLSGETQYHQLIQE
FT                 FPDLLDQSAIKKVSKKHNVQHRIITNCQPIFSKPRRLNAEKLKLAKAEFDK
FT                 MLELGICRPSDSPWASPLHIAPKPKGGWRPCGDYRRLNANTLPDRYPVSHI
FT                 QDFNHFLEGQSIFSVIDLVRAYNQIPVAEEDIQKTAIITPFGLFEFPSMTF
FT                 GLCNAAQSFQRFVNSIIQGLEFCFAYLDDILIASKNKEEHIEHLRILLQRL
FT                 NDYGVVIQPNKCSFGKSQVEFLGYQISKDGTKPLESKVIAIKEFKVPETVD
FT                 QLKRFLGMINYYRRFMPHAIETQIPLLDCTKGNKKKDKSPIDWTPERLDAF
FT                 NKCKEALANATLLSHPSDNAKICLMVDASDTAIGGVVNQLKDNAWQPLAFF
FT                 SKRLSSAESKYSTYDRELLSIYASIKHFRPMLEARDFTIFTDHKPLVFAFN
FT                 QKNEKASPRQLRHLDFISQFTTDIQHISGIDNVVADTLSRINSISLSSSVD
FT                 YNLIAQSQKTDKELKQLKKQRTGLKLVEIMFHEVLITCDVSTETPRPFIPS
FT                 ELRKTIFEQVHNLAHAGTKATSKLIKKSFVWPSIDKDVQIFCKSCVPCQKA
FT                 KVFRHNKSAFEQIKAPSTRFEHVHIDLVGPLPTSEGYTYCLTCIDRFTRWP
FT                 EAIPITDIKAETVAKAFFLNWIARFGPAIHLTTDQGVQFESELFTELNKLM
FT                 GTRRLRTTPYHPQANGMIERWHRTFKNAIKAHANNRWTETLPLILLGLRSI
FT                 ISDNLNASPAEMVYGTNLRLPYHFFNESKPKRNQTNPSSFVERLKENMNKL
FT                 LPIPASNHHKQQIFIHKGLNSCTHAFVRTDAVKKSLQNPYEGPFEIISKHK
FT                 KYFTLKIKGKFKQISIDRLKPMFTTVNAGNTDAAISKTKKQLRFAEQKNH"
FT   CDS           4245..5093
FT                 /product="Gypsy-4_BrCo-I_2p"
FT                 /translation="MAPRSTFPVQPPAWLVELLQQVNRMLSDLNQQDAAIR
FT                 ELRSISLETQHLLRSRLNSTVNCSAESTNNVSIRRTQHAASMPTAPIATRP
FT                 ANTMPTATFTTCPDRINQPRAQNGFKINRMYKLALNQAVRNAAVPLPRPTS
FT                 STINRICWYHRQFGVTSANCIAPCSFSPPPILQSTSSNHTVNINGSANPAA
FT                 RRQRTPVSQSSNNQPLATNSLAVYQTTSVPELLNQQNITPQRDIASNPKPM
FT                 VEDWSAEDELDVQYPQLSDSSSSSGSDSEDENPNCNTSSKGE"
XX
SQ   Sequence 5096 BP; 1649 A; 1259 C; 910 G; 1278 T; 0 other;
     ttggtgaccc caaaaacgaa cacaagttcc ttcgggtatt tagtataagc aacgagcttt        60
     cgtactacaa cacagaaatt cagtcgacca tcgtcaactt tacaatttct gctctcttaa       120
     tcactactaa ttatggcaaa cgaagacgaa cttcctttcc aaaacgctca agataacgtt       180
     cagcaaaacg gtgaggctca gcaagatgct cagcaaaatg cccagcaaaa tgttcagccc       240
     aacgctcagc aaaacaacgc agtcaatcgc atccaggtta gagttcctcc cttctggaag       300
     caaaaccccc agctgtggtt ccgccagttg gaagcgcaat ttgcgaactc taatatagtc       360
     agtgatctga ccaaatttaa tacgattgtc ggcgttgttg agagcgacat tctcacctcg       420
     gttagcgata tagtcctcaa cccacctgtt ggaaatctct acgaaacaat aaaacagcgg       480
     ttgataaagg aattcgaaga caccgaaaat aaaaagctga aaaatctttt cagtgaaatt       540
     gccatcggtg agatgaaacc gtccagctta cttcgtcgaa tgagggaact gtcttgcgga       600
     aaagtgggtg atgacctatt gaaaaccctc tggttacaaa gattacccgt caatatacaa       660
     acagttcttg ccaccagtag cgataatcta acgcagttgt ccgtaactgc tgacattatg       720
     tttgatataa ctgaggcagc ttccattcag gccgtcagta ataatcaagt taatcaaatc       780
     agcgatttag taaacgtcgt tgatcggcta gaaggtaaga tcgaaagtct gaaagaagaa       840
     tttctcaaac ctggtaaaag caatcaacga tcagcacgaa atcgccaaac aacgcccgtt       900
     cgggcacctt ctgaagcgaa caaagacttt tgtttctacc acaaatcttt cggtaacaaa       960
     gcaaggaagt gcaaagaacc ttgctcgtat aacgattcga aaacaaacca agaatatagg      1020
     ccaaattgct cagtgattag ccaggcacca aacataagtc gtttgttcgt ttcagatagg      1080
     aactctggga gagatttcct tattgacact ggggcagatt taagcgtcct ccctcccact      1140
     tctcgtgaaa aaggtaacgt cccttgtctc ttcaagttat atgccgcaaa cggctcgctt      1200
     attaagacat acggaagcaa aacagtcacg ttgaacctcg gcttacgccg ccccattcgt      1260
     tgggttttca ttatcgcaga cgtgcgatcg cccatcatcg gttctgactt gttaaaaaaa      1320
     tacgaccttt taatcgacgt caaaaacaac aaattggttg ataacctgac tagcatctca      1380
     atccacggaa aaattcctca aaacaactct ggcacacaga tcaaatctct gtcaggggaa      1440
     actcagtatc atcagttgat tcaggaattt cccgatttgt tagatcaatc ggctattaaa      1500
     aaagtgtcga aaaaacacaa cgtccaacac agaattataa ctaattgcca accaattttc      1560
     tctaaaccaa ggcgtcttaa cgccgaaaaa cttaagctag ctaaagctga gtttgacaaa      1620
     atgctcgaac tgggcatctg tcgaccatct gatagtccat gggcttctcc tttacacata      1680
     gcacctaagc caaagggcgg ctggagaccc tgtggcgact acagacgtct aaacgctaac      1740
     accttaccag accgttaccc ggtttctcac attcaagatt ttaaccattt tttggaaggt      1800
     caatccatct tcagcgtgat cgacttggta agggcgtata atcaaattcc agtagcggaa      1860
     gaggacattc agaaaacggc catcatcaca cccttcggtt tattcgaatt cccttctatg      1920
     acttttggtt tatgcaacgc tgcacaatca ttccagcgtt ttgttaactc gattatccag      1980
     ggactggagt tttgtttcgc ctacctggat gacattttga tagcatctaa aaacaaagag      2040
     gagcatattg aacaccttcg catcctattg caacgcttga acgactacgg cgtcgtaata      2100
     caaccaaata aatgctcttt tggtaagtct caagttgaat ttttaggcta tcaaatttcg      2160
     aaggatggca cgaaaccatt ggaatccaaa gtcattgcta ttaaggaatt taaagttccc      2220
     gagacagttg accagttaaa acgatttttg ggaatgatta attactatcg tcgcttcatg      2280
     ccccatgcaa tcgaaactca aattcctttg ctagactgta ctaaaggcaa caagaagaaa      2340
     gacaagtctc caatagattg gactccagag agacttgatg cctttaacaa atgcaaagag      2400
     gcactggcca acgcaactct cttgtctcat ccatcagaca acgccaaaat ctgtctcatg      2460
     gttgatgcgt cagacactgc aataggcgga gtagttaatc aacttaaaga taacgcttgg      2520
     caacccttag ctttcttttc aaaaagatta tcttccgccg aaagcaagta ttcgacatac      2580
     gacagggaac tcttgtcaat ttacgcttca attaaacact tccgtccgat gctcgaagcc      2640
     agagatttta ccatctttac ggatcacaag cctctcgttt ttgctttcaa ccaaaagaac      2700
     gaaaaagctt ctcctaggca actccgacat ctcgatttta taagtcaatt taccacagat      2760
     attcagcata tctctggcat tgacaatgta gtcgctgata cactatctag aataaatagt      2820
     atttcgctct ctagctcagt tgactataat cttatcgctc agtctcaaaa gacggataag      2880
     gaacttaaac aactaaaaaa acagcgaaca ggactcaaac tagtcgaaat aatgtttcac      2940
     gaagtcctaa taacgtgcga tgtctccact gaaacaccac gaccattcat tccttcggaa      3000
     ttaaggaaga caatctttga acaagttcac aatctcgctc atgccggaac aaaagctacg      3060
     tccaaactca ttaaaaagtc attcgtttgg cccagcatcg acaaagacgt tcagatattt      3120
     tgtaaaagtt gcgtgccatg ccaaaaagct aaagtcttcc ggcataataa atccgctttc      3180
     gaacaaatta aggcacctag tacgcgattc gaacatgttc acatagattt agttggacca      3240
     ctcccaacct ctgaaggtta cacttactgc ctgacatgca ttgataggtt tactcgctgg      3300
     cctgaagcca ttccgataac cgacattaaa gccgaaacag tggcaaaggc attctttctt      3360
     aactggatcg ctcgttttgg tccagctatt cacctgacga ccgaccaagg tgtgcaattc      3420
     gaatcggaac tctttaccga actaaacaaa ttaatgggaa cccgtaggct acgtaccaca      3480
     ccttatcacc ctcaggcaaa tggcatgatt gaacgttggc atcgaacttt taaaaatgcc      3540
     atcaaagcgc atgccaacaa ccgttggaca gaaactcttc cgttaattct cctcggttta      3600
     agatccataa tctcggacaa cctcaatgct tcaccagcag aaatggtgta cggtacaaac      3660
     ctacgtttac cttatcattt cttcaatgaa tctaaaccta agcgtaacca aaccaatcca      3720
     tcatccttcg ttgaacgatt aaaagaaaac atgaacaaac tactgccaat ccctgcatct      3780
     aaccatcaca aacaacaaat tttcattcat aaaggattaa attcctgtac acatgctttc      3840
     gtgcgaacag atgccgtaaa aaaatcgctt caaaacccat acgaaggccc gtttgaaatc      3900
     atttctaaac ataaaaaata cttcacactg aaaataaaag gaaaattcaa gcaaatctca      3960
     atcgaccgtt tgaaaccaat gtttacaacc gtaaacgctg gcaacaccga cgctgcaatc      4020
     agcaaaacga aaaaacaact tcgtttcgct gagcaaaaaa atcattaaac tcatccgaca      4080
     tgcttcgttc tccattttgt tgaaacacca aaattcccgg aatttttgcc tatttaagga      4140
     gaactaaatg tcaacatctt tctttctaat caacgagttc aagcgtaagc aagctcaaca      4200
     agagttttta cattttcaat caaccatttt cttataaaaa caaaatggca ccaagatcta      4260
     cgtttccagt acaaccaccg gcatggttag ttgaactact gcagcaagtg aaccggatgc      4320
     tttccgactt aaaccaacaa gacgcagcaa tccgggagct acgctcaatt tcactggaaa      4380
     cccagcattt actacgttca cgattgaatt caacggtaaa ctgttcggcc gaatcgacaa      4440
     acaatgtttc gatcaggcgt acgcaacacg ccgcatcaat gcctaccgca ccaattgcaa      4500
     ctcgaccggc caatactatg ccaacggcaa cattcacaac ctgtccggat agaattaatc      4560
     aaccgcgtgc gcaaaatgga tttaaaatca atcgtatgta caaattggcg ttaaaccagg      4620
     ctgttcgaaa tgcagcagtc ccgttaccca gaccaacatc atcaaccatc aatcgaatct      4680
     gttggtatca ccgccaattt ggcgtgactt cggctaattg catcgcaccg tgttcattct      4740
     ctccgccacc gattctacaa tccacatcgt ctaatcacac ggtcaacatc aacggctcgg      4800
     caaacccggc agcacgacga caaagaactc ccgttagcca atcttcaaac aaccaaccgc      4860
     ttgcaacaaa cagcttggcg gtataccaaa caacttcggt tccggaattg ctcaatcaac      4920
     aaaacatcac accgcaacgg gacattgctt ccaaccctaa accaatggtc gaagactggt      4980
     cagcagaaga cgaactggac gttcaatatc cgcaactgtc agattcatca tcatcttctg      5040
     gttcggactc cgaagacgaa aatccaaact gtaacacttc atcaaagggg gagtaa          5096
//
ID   Gypsy-4_BrCo-LTR repbase;    DNA;    INV; 282 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-282
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1392-1392 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 282 BP; 94 A; 64 C; 37 G; 87 T; 0 other;
     tgtggtgccc tcggtcgcat aaaacctaca acacaaccat cgaacgcact catccaatca        60
     tcaaattaat tccaatcacc agctgcgcca gatgattaac tgaattgtca ttacgttgtc       120
     aaactcaatt ttgtttttgt tgttaaaaca actaaattac gttttctagt tcaaaccaaa       180
     ccgtgtataa aatagctgga attagtaaat aaattattca ttctccattt ggattcaatc       240
     ctaaccacaa gtctttcact tgtaaagtag caggatccca ta                          282
//
ID   Gypsy-4_BTa-I repbase;    DNA;    INV; 7230 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7230
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 583-583 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..2881
FT                 /product="Gypsy-4_BTa-I_1p"
FT                 /translation="MKDHKLIFQFGQKTITVTANELLPHIKKELPSLALQG
FT                 KKKINVLTSLKQIKTEKTLKFLQEELGIQLPSTEKLQEITSMEEVGDILED
FT                 GSSNNSSENEEGEADENATANIHRLKHPSKLTKEELIAELKKFGVPYVFAS
FT                 TKDAARTLARIQEGTLEVPQTPAEEIFQDTFSRISKIASMPVHKTLRYETQ
FT                 LQDLKQNTVQNHDAMHGDPQSQEKPLSELSGPESRQLEHQRITWESATKNL
FT                 GAIPKSVTGTTHAKTQKEPFSWKDQRNYSKTGPSSQNKGYTEVLNHTHKQD
FT                 RDYYADLSQNHNNLPQRLGDRQHQIHQKADQYWYDYSHQSDHQPTSVMLQD
FT                 QFTTRETQDQSSRKTFSQMQLKSSQVKHTAENNHMQNRYLPNNPRDHPTSG
FT                 YENFTQYQSRPEWGNQRENNNGNFLMGLRPPKLEIPKFEKSTAMDWLTRFE
FT                 MIMGQYPDEMKKRQLIACLAKDDNQWLQNNISDIQDGDWQGIRKLFVFYED
FT                 DRKGHFEEQKKFDETAQGEAETGLNYVERKLRLAQRLMHPPPIAEIIKSVI
FT                 KGLDESLKHLVYNKNPLTITDLRMSVKRAQDDCHILNPSDSLLKQLNKTSE
FT                 SISTQVKTILEEQLRNLNIEGTKHANQVTFADERKEKQRWSRRDAYEGENT
FT                 TRKPRDSSFRRRSYSRDRSTSTPRYRDYSRDRYYNNTRQSRDRYHRDNDRY
FT                 PSQDRRSRYYSRDFTPTYRNRDRSASYHSRERESRRYGRESSPGYRSRENP
FT                 RYRSQERSRYHSRERSGYHSRDNEQDKRRSRERSSSRSRDDERDEISRYPE
FT                 RSHSNERYHDSRYGKTNWKNTEGGRRNRSQSGDSKN"
FT   CDS           2914..7137
FT                 /product="Gypsy-4_BTa-I_2p"
FT                 /translation="MSPQELKTPKTKFPHFRKQTNQNFSDKIQGTKANSHK
FT                 KSNHFLGLSTGLTFEARVARKRISILNDTGSSVTLIDKRYAKNITPLRNKL
FT                 TVVGASDGELNILGKTRITAWISTGVTVSITGLVVENQRYPVLIGNDFNMR
FT                 YATKINIQQNTMELWVRGRNITIPTKLEERKHIQSLETDNLMNTTPLRGPV
FT                 VLNGIQTQIIYDTGSCALCVSKDYVNPVDIRPIEKIKLKTADKSQLRIMGQ
FT                 ATIELEIQGHKISADALVSENLSNALLTGNAFHKKFVENIDFGRQTVSLKI
FT                 PNCKRAVTTNVTATATFADLIKTKESPTGNGVPSPEQEENVANSIKIHSEN
FT                 DKKSREKTEKPTTSQWETYDEEAQSILNITTDIDDDSEKLEVRVMKDQIIP
FT                 PQSFKLIKCKIPKYAGHEYGIVNLKEGALTAKKLFCPDLAIDIQQFVRIRI
FT                 RNNKLVPVKLFKNYEIAEVYPIEIKYEEEKDSKEENTAEVNSLNDTKDATS
FT                 AEKTEKDENQHASNEKERLQELNINRALSKEQELQLKNLILKYQDIFIWKD
FT                 CKFNAGEALVPPQKIHLKDFTPVHKPPFRTGKQQRIIIKQYIDEMLRAKII
FT                 RPSTSEYASPLMLVSKKETGRFRCVLDLRALNLKLAPESFPLVRVDDVLSC
FT                 LNGAKYISCFDLEQGYSQIKLDDESADLCSFSCYEGHYKMIVLPQGLSISP
FT                 LRFSKIMAKCFSPMLYRGLLNYMDDFYVYNVDGDFSGHLEKLEEFFKLCRL
FT                 YNLKLKPKKAQIAMTECDLLGFHFTQNGIRPSLEKISAIANAPVPTDVKGV
FT                 RSFLAAAGYYRNHIRQMAEYSEPLIQLTRKNAKFCWDAEKQRAFDNIKRAL
FT                 TSNELLAWYDPENTTLELHADASITAIGNCLNQRYKDGTVRPISYYSRVLS
FT                 PNEKSWGTHEREILAITWGMEKNRHYLWNTPFKIVTDNQALVYVKTMKNPS
FT                 ARMLKLILKLSEFNYTIQWKKGSKNVMPDYLSRYPPLLLNMLEVNSNFQER
FT                 KKNTMKIPDRARYQPGDPTAQEQIPSKGSQISEDRSKTSAEKTKEPEKDRS
FT                 DTETAYFDINAKVDMRTEQKKDHKLNAIYAAIKNPKKSNNKTVKEAQQYYI
FT                 QDGVLWKKSHDTRKLLLIPSHMVDSTIAEVHSSPFSGHQGTYKSLQRALKR
FT                 FYWKGMHSQIRKYVLSCPTCQFAKKLQNHEKYGIIKSHDISIASAMAKIGI
FT                 DAFGPLPTANDQEKNKKKYIIGICDYFTKFLWLKSVKDLTSESLEAVLTEF
FT                 FGIFGIPVEIVMDNGSNFASELTNAFLDQHGVKKTYVDTYCPRANGQIENV
FT                 WKTVGSYLRCFAGENHADWPKFIPSIMAAHNSSTHLSTKSSPYFLLTGQEF
FT                 RLPLDAKLFFFFSPESSLFLFNEPSSTTPGTRLFDIRMQSLQQSS"
XX
SQ   Sequence 7230 BP; 2695 A; 1498 C; 1460 G; 1577 T; 0 other;
     tggttggagg cgcttgtctt ttccccaggg agaagtcgat caggtacgca gtacctagga        60
     ataggtacta ggaatttaag acgctgattc accagaaggg tcgatcattc agtcgttttg       120
     tctccacgta tttttcctca gaactctaca ccatcgcgtc atcgatcatt aaattcctcg       180
     gagtttattc gggaccaaaa actaattttt ttttctgctc aaatttttca cttgagctca       240
     aaagattgta tttttttttt tctctcaaaa aattagattt tacttttgat tcgtaaaaat       300
     ctttcttaga aaatattgat tttgttttct tgacattgtg aatactctca cagaggaagc       360
     tgcaacgatg aaggatcaca aattgatttt tcaattcgga caaaaaacaa tcacggtcac       420
     agccaacgaa ctgctgcctc acatcaaaaa ggagctacca agcttggcat tgcaagggaa       480
     aaagaaaata aatgtactca cctcccttaa acaaatcaaa acggaaaaaa ccctaaagtt       540
     tttacaagaa gaattaggta tccaattacc ctcaacagaa aaactgcaag aaattacatc       600
     gatggaagaa gtgggcgaca tactcgagga cggatcatca aataactcca gcgaaaacga       660
     agaaggagaa gcagacgaaa acgccacagc gaatatccat agattaaaac acccaagcaa       720
     actcacaaaa gaggagctga ttgcagaatt gaagaaattc ggagtaccgt acgtgtttgc       780
     aagtacaaaa gacgcagcta ggacactagc aagaatacaa gaagggactc tggaagtacc       840
     gcagactcca gcagaggaaa tttttcaaga cactttcagt agaatctcta aaatagcgtc       900
     aatgcccgtc cataaaacat tgcgatatga aacgcaatta caggatctga aacagaacac       960
     tgtacaaaat cacgatgcaa tgcacggtga tccgcaatca caggagaaac ccctcagtga      1020
     actttctgga cctgagagtc gacagctcga acaccaacga ataacttggg agtcagccac      1080
     caaaaatttg ggagctatcc caaaatcagt aacaggaacc acgcatgcaa aaactcagaa      1140
     agaaccattt tcctggaaag atcaaagaaa ttacagcaaa actggcccat cctctcaaaa      1200
     taaaggctac acagaggtac tcaaccacac acataagcag gacagagatt attacgcgga      1260
     tttaagccaa aatcataata acctccctca gcgcctagga gataggcaac accaaataca      1320
     ccaaaaagca gaccaatatt ggtacgatta ctctcaccag tccgaccacc agccgacatc      1380
     cgtaatgctc caagatcaat ttactacacg tgaaactcaa gatcagtcaa gtcgtaaaac      1440
     tttcagtcaa atgcagctca aatcgagtca agtcaaacat actgctgaaa ataatcacat      1500
     gcaaaataga tacctgccaa ataatccacg agaccaccct accagcgggt atgaaaattt      1560
     cacgcaatat cagtctcgtc cagaatgggg aaatcagcgt gaaaacaaca acggaaattt      1620
     tctgatgggt ttgcgtcctc caaaactaga gattccaaaa ttcgaaaaaa gcacagctat      1680
     ggactggctc actagatttg agatgataat gggtcaatac ccagacgaaa tgaaaaaacg      1740
     ccaattaata gcatgtttgg caaaggatga taatcaatgg ttacaaaaca acatttcaga      1800
     tattcaggat ggtgattggc aaggtatccg gaaactgttt gttttttacg aagacgacag      1860
     aaaaggacat tttgaggagc agaaaaaatt cgacgaaacg gctcagggag aagcggaaac      1920
     aggattaaac tatgtggaaa gaaaactcag gttggcccag aggctaatgc atccccctcc      1980
     gattgcagaa ataataaaaa gcgtaattaa aggactcgac gaatcattga aacatctcgt      2040
     atataacaaa aatccactaa caattacaga cttacgaatg agtgtgaaaa gagcgcaaga      2100
     tgattgccat atcctgaacc ccagtgatag cctgttgaaa cagctcaaca agacgtccga      2160
     aagcatcagc acgcaagtaa agaccatttt ggaagaacaa ctacgaaatc taaatattga      2220
     aggaaccaag cacgcaaatc aagtcacgtt cgccgatgaa agaaaagaaa aacaacgatg      2280
     gtccagacgg gacgcctacg aaggagagaa tacaacccgg aagccacgtg attcaagttt      2340
     caggaggaga tcctattcaa gggataggtc gacatcaaca cctcgttaca gagattacag      2400
     cagagataga tattacaaca atactcggca gagtcgcgat agatatcata gagacaatga      2460
     tagatatccc agccaggatc ggagatcaag atattacagc agagatttca ccccaacata      2520
     tcgaaatcgt gacagaagtg caagttatca tagccgcgag agagaatccc gacgttatgg      2580
     tagagagagc tcacccggat atcgcagccg ggagaatccg agatatcgca gtcaggaaag      2640
     gtcgagatat cacagccgtg agagatcagg atatcacagc cgtgacaatg aacaagacaa      2700
     acgtcgaagt cgcgagagga gttccagtag aagtagagat gacgagaggg atgaaatatc      2760
     aagatatccg gagagatctc acagcaacga aagatatcac gattccagat atggaaaaac      2820
     aaattggaag aacacagaag gcggaagaag gaacagaagc cagagcggag actcaaaaaa      2880
     ctgagaaaaa ctcatctgga agtgggtctg cagatgagtc cacaggaact taagacccca      2940
     aaaaccaaat ttccacattt tcgaaaacaa acaaatcaaa atttttcgga caagattcaa      3000
     ggcacaaaag caaactcaca caagaagagt aaccactttt taggactcag tacaggcctc      3060
     acattcgaag cacgagtagc tagaaaacgc ataagtatcc taaatgacac gggaagcagt      3120
     gtaacattaa ttgataaaag atacgccaaa aatataacac cccttcgaaa taagcttaca      3180
     gtggtcggcg catcagatgg agaattgaat atcttgggaa aaactaggat tacagcttgg      3240
     atttcaacag gagttacggt gtctattaca ggcttagtgg tagaaaacca acgatacccc      3300
     gtattaattg gtaatgactt caacatgaga tatgctacaa aaattaacat ccaacaaaac      3360
     acaatggaat tgtgggttag gggacgaaat ataacaatcc ccacgaaatt agaagaacgg      3420
     aagcatatcc agtccctaga aacggacaat ttaatgaaca ccactccatt gagaggccca      3480
     gtcgttctaa acgggattca aacacaaata atttatgaca caggcagttg cgcactatgc      3540
     gtcagtaagg actacgtcaa tccagtagac atacgtccca tagagaaaat taaattgaaa      3600
     accgctgata aatcccagtt acggataatg ggacaggcga ccatagagtt agaaattcaa      3660
     gggcacaaaa tttcagccga tgccttggta tcagaaaatc tgtcaaatgc actcctcacg      3720
     ggaaatgcat ttcacaaaaa attcgttgaa aacatcgatt ttggacgaca gacagtaagt      3780
     ttgaaaatac caaattgcaa gcgagcagta acaacgaacg tgacggctac agccacattt      3840
     gctgacctaa tcaaaacaaa ggaatcgcca accggaaacg gagttccatc acccgaacag      3900
     gaggaaaacg ttgccaattc aatcaaaatt cactcggaaa atgataagaa atctcgagag      3960
     aagacggaaa aaccgacaac atcgcaatgg gaaacgtatg atgaagaagc acagagtatt      4020
     ctaaacatca ccacggatat cgatgatgac tctgaaaaac tggaagtacg cgtcatgaaa      4080
     gatcaaataa tcccgccgca atccttcaaa ttaataaaat gcaaaatccc gaagtatgca      4140
     gggcacgaat acgggattgt aaacttaaaa gaaggagcgc ttacggcgaa gaagctcttc      4200
     tgcccagatc tagcaattga cattcaacag ttcgtacgca tacggattag aaataataaa      4260
     ttggtcccag tgaaattatt taaaaattac gaaatagccg aagtttatcc gattgaaata      4320
     aaatacgagg aggaaaagga cagcaaggaa gaaaatacag ctgaagtaaa ttctttaaat      4380
     gatacgaagg atgcaacatc agcagaaaaa acagaaaagg atgaaaatca acacgcatca      4440
     aacgaaaaag agcgcctaca agaacttaac attaacagag cgctctccaa agaacaggaa      4500
     ctgcaactca aaaacctaat tttaaaatac caagatatat tcatatggaa agactgcaag      4560
     ttcaacgcag gagaagcatt ggtaccacca cagaaaatac atttaaagga ctttactccc      4620
     gtacataaac cacctttcag gacagggaaa caacagcgaa taattataaa gcaatacatc      4680
     gacgaaatgt tgcgagcaaa aatcattcgt ccatcaactt cagaatatgc atcaccttta      4740
     atgttggtct caaaaaagga aacaggacgg ttcaggtgcg ttttggacct aagggcttta      4800
     aatttaaaac tagcccctga atcgtttccc ttagtaagag tggacgatgt cctatcatgc      4860
     ctaaatggag ccaaatacat aagttgtttt gatttagaac aagggtactc gcagataaaa      4920
     ttagacgatg aatcagcgga tctctgttct tttagttgtt acgaaggaca ttataaaatg      4980
     atcgttttgc cacaaggtct atccatctcg ccactaaggt ttagtaaaat aatggcaaaa      5040
     tgttttagtc ccatgttata cagaggatta ctgaactaca tggatgattt ttacgtgtat      5100
     aacgtagacg gagatttttc tggacatctg gagaaattag aagaattttt caaactatgt      5160
     agactgtaca atttgaagtt aaaacccaag aaagctcaaa tcgcgatgac agaatgcgat      5220
     cttcttggtt tccattttac tcaaaatggg atccggccca gtttggagaa aatttcagca      5280
     atagcgaacg ctccagtgcc aacagatgta aagggcgtcc gatcattttt agcagcagcc      5340
     ggttattaca ggaaccacat tcgacagatg gcggagtact cagaaccttt aattcaacta      5400
     actaggaaaa acgcaaaatt ttgctgggat gcagaaaagc aaagagcgtt tgataacatc      5460
     aaaagagcat taacatcaaa tgagctccta gcgtggtatg accccgaaaa tacaacgttg      5520
     gagctccacg ctgacgcatc aataacagca ataggaaatt gccttaacca aagatataag      5580
     gatggaacag tccgtccaat aagctactat tctcgagtat tgtccccaaa tgagaaaagt      5640
     tggggcacac atgagcgaga aatattagca ataacatggg gaatggagaa aaatcggcat      5700
     tatttgtgga acaccccgtt caaaattgtc accgacaatc aggcgctagt ttacgtaaaa      5760
     acgatgaaaa acccatcagc gcggatgcta aaattgattt taaagctatc agaattcaac      5820
     tacacgatac aatggaaaaa aggttcgaaa aacgtcatgc cagactatct gtctagatat      5880
     ccaccactgc ttttgaacat gctagaagta aacagcaatt tccaagagag gaagaagaat      5940
     accatgaaaa taccggacag agcaaggtac cagccaggag accctacagc gcaagaacaa      6000
     atcccatcaa aaggaagcca aatcagcgaa gatagaagca aaacaagcgc tgaaaaaacg      6060
     aaggaacctg aaaaagacag gtcagatacc gaaacggcat attttgatat taacgccaaa      6120
     gtggatatga gaacagaaca gaaaaaagac cataaactga acgccatata tgcggcaatc      6180
     aaaaatccaa agaagtcaaa taataagacc gtaaaagaag cccagcaata ctacatacag      6240
     gacggcgtac tctggaagaa atcgcatgat actagaaaac tgctactaat accaagccac      6300
     atggtagaca gtactatagc tgaagtgcat agctcccctt tttcaggcca ccagggaacc      6360
     tataagagtt tacaacgggc actaaaaaga ttctactgga aaggtatgca ctcacaaata      6420
     aggaaatacg tgctttcttg cccgacctgt caatttgcaa agaagcttca aaaccacgag      6480
     aaatacggca tcataaaaag tcatgacatc agcatcgcca gcgcgatggc aaaaattggc      6540
     atcgacgcgt tcggtcctct accgacagca aatgatcagg aaaagaacaa gaaaaaatat      6600
     ataattggta tttgcgatta ttttacaaaa ttcctatggc taaaaagcgt aaaggatttg      6660
     acgtcagaat ctttagaagc agtcttaacg gagtttttcg gaatattcgg gatcccagtc      6720
     gagatcgtca tggataacgg atcaaatttt gcctcagaac tgacaaatgc atttctagac      6780
     caacacgggg tcaaaaagac atatgtggac acatactgtc cgcgggcgaa tggtcaaata      6840
     gaaaacgtgt ggaaaacagt aggttcttat ctaaggtgtt ttgcgggaga aaaccatgcg      6900
     gactggccaa aattcattcc atcaatcatg gcggctcata attctagtac acacttgtct      6960
     acaaaatcaa gtccgtattt tctgctcaca ggccaggaat ttaggctacc actggacgca      7020
     aaattatttt tttttttcag tcccgaaagt tccctgtttc tattcaacga accatcgtcc      7080
     acaacacccg gaacgcggtt atttgacatc cgcatgcaat cattacaaca aagcagttaa      7140
     ttcttttggc agcctacccg aaacctccct tttctctctt tcggtggaaa tataatcttt      7200
     gcaagattat atttacccga gagtggggaa                                       7230
//
ID   Gypsy-4_BTa-LTR repbase;    DNA;    INV; 557 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-557
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 609-609 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 557 BP; 127 A; 156 C; 144 G; 130 T; 0 other;
     tgtgaggaga cgaaccggac cccccataca aaaccaccct tttgtatgga gagctggcaa        60
     cgtcgggatg agctatgact cgaggcggga agtgctgact ttgaggcgat gtgcgcatgc       120
     gcgccgcggg cctcgggcgg tcggaagtcg tgcttgactc cgactgctcg agccgaaatc       180
     agttcgtgtt gggtcgtttt tcagagcgac ttacccaccc gagctccggc tcaagtcgta       240
     aacttatata tccatcatcc ttggttgaag cgtcatcccg cactttttga accaagcaat       300
     aaaccaaatg gaacatttca cgatgttacc ctcatttctt cgggagaatc cgtaacttag       360
     agtgaccctt gcacctacta tagccgttgc tgccctcggg agagtgatag ctgtcgtagt       420
     tggaggccac cgctctaggg tgcggataag accccaaagg ctctctatag tgagtacccg       480
     ccgttgctgc cttcgggaga gtgatagcga ctcacatata ggaagtccaa accccccccc       540
     cttttcacca cattaca                                                      557
//
ID   Gypsy-4_CFl-I repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4375
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1015-1015 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus. The 3'-end is not
CC   determined.
XX
SQ   Sequence 4375 BP; 1610 A; 737 C; 920 G; 1086 T; 22 other;
     tttgggggct cgttcgagcg aacagaattg tgcaaggaga actaaataaa gtgagtcttt        60
     tcgcgaaagt gacagaaaaa ctgtgagaat acgagagtaa cggtgaaaaa caactgtgag       120
     acaaactgtg agataaactg tgtaagaaaa tgagtacgag aaacccaaca gattttacag       180
     tgaaccaact gaaggaaaaa ttgcgagagc ggggcttttc ttcggcagga aataaagctg       240
     aattaatcag tcaattaaat gaaacagatc catcgtgcaa gtggatagaa gaaatttccg       300
     caatgccaga aaccagtgca atccaaggag accaaggcga atccgaagct agggctccga       360
     cgtcaatatc tcaatatgaa cgagaattgg aaatatttcg tcgagaaaaa gagttagcag       420
     aacgagaatt acaattcgcg cgaagagaaa tagaactgct aagagagatg caacaactaa       480
     gtacagcaga acgggatcaa ggaacaagac gagaaaatac tttacacgat ctgtcaaaag       540
     ccagtataac agttattgcg gatttacttg gctattttga tggcagtacc ggagactatg       600
     aaatctggga gaagcagctt aaattgttaa aggcaacgta tcatctatcc gatgagtacg       660
     tcagaatcct gattggcatg cgattgaaag ggaaagcttc aagttggatg cactctaaac       720
     cgcagcacat tgaactaccg gtggacgttt tattaagcga aatgcgagaa atgtatgacc       780
     atcgtcccag caggatgcta ttaagaaaac agtttgagga gcgtatatgg aaaaaagagg       840
     aaacattcca tcaatacgtt cacaaaaaat aatccttgct aatcgtatac caattagcga       900
     agacgagatc atcgactata tcatcgaggg aataccagtg gcgagcttga gagcacacat       960
     tggtaaactt acgacgaaag catcgttact acaagcattc gagaaagtga cactcaaaga      1020
     caagatcctg wcgaacggcg caaagaagga ggaacaacag aaacaaagca acggagctca      1080
     gcgacatcgt ggaggcgaga aaaccgagwa gaaaaataca amgaggagtg agaccgagaa      1140
     acgttgtttt aattgcggac tgcgtaatca cgtgagcgkg gactgtccaa caaaaacaga      1200
     aggaccaaaa tgctttcaat gcggcgagcg aggtcatatc gcagcgaagt gtgcaaaaaa      1260
     saaaaataag taggaagtat caatacsgat atgcgtactg tttgtagaaa atatastaag      1320
     gaggtmgaaa ttaacggtca taaagtgcta gctcttattg acaccggaag tgacatatgt      1380
     ttattgcgtt ccgataagta cattaaattg ggctcttctc aattaaatct aaagcaaatt      1440
     cgatttcgcg gtgtaggctc gagcgataat tcaaccttgg gtgaatttaa tgcaaatttg      1500
     acaatagatg gaaatacata tcctattcta atacacgttg tgtcagatgc acttttaaat      1560
     ttcgaactaa tcgtaggtac agattttctc aataaaatcg aaataacaat aacagcgggt      1620
     aaaatctcaa ttaatccgtt atcagaacct tcatgcgtaa acgagaatac gcctgaaatc      1680
     taccaaatcg atttaaattt tgaagagaat gacgaaatag acgtatcgca tataacagat      1740
     ttggaatata aaaatcaaat taaagagcta gttgctataa tcctaataaa tcgcgagaaa      1800
     tagatcttaa aatgacgata gtacttaaag acgataaacc tgtctaccaa tgagctagac      1860
     gattagcagc atcagaaaga gagcaagtaa atacacaaat aaacgagtgg ttacgcgacg      1920
     gcattataca accatcgtta tcggaatatg cgagtccggt ggtactagca aagaaaaaag      1980
     ataattcggt tagactgtgc acgtcgacta tcgattgcta aacaagaaaa tagttaaaga      2040
     tcgatatcca ttaccaatta tcgaggatca attagattta ttgcaaaacg taaatttctt      2100
     cagcacatta gacttaaaaa atggtttttt tcatgtttcg atagaagaac aaagccgaaa      2160
     atatacagct tttataaccc cagatggtca ctacgaattt ttacgtgttc cattcggcct      2220
     atgtaattcc ccggccgtst ttcaaagata aatattgtgt tcasggatct tattcgagmt      2280
     aagatagtat taacatatat ggacgacttg ataattccat cctcggattg taaaaatgga      2340
     atagcgaatc ttaagacagt gttaaaaact gcgagcgaag ccggattagt aataaattgg      2400
     cgaaagtgta awtttttaca atmtcgagtt gaatttctgg gtcatattat tgaaggcgga      2460
     cgtgtgtacc catctaaacg caaaatagag gcggtgcaga aatttcttga accttctaat      2520
     gtgaagcaaa tgcaaagttt tttaggatta agcggatatt tccgaaaata ccwcagtatt      2580
     ctactattgc gcgaccatta agcgatctat taagggcaaa tactaaatat atctttggcg      2640
     aaaaagaaag agaagcgttt atttaattaa aagaaatgtt agttaataaa cctgtattaa      2700
     atttatatat aataggcgca gagactgaac tgcatacgga tgcttcaata cwtggattcg      2760
     gcgcgatact cttgcaaaga agcacgaaag ataatgcgtt tcatccggtt tattatagta      2820
     gcaaaactac wgcagccgaa caaaaatacm cgagttatga attggaagta ttagcaatag      2880
     cacttaaaag attccgcgta tatttaatag gaattccatt tactattgta acggattatc      2940
     gtgcattcac agcgactatg agtaaaaagg acttgtgtgt gcgcgtagcg cgttgggcgt      3000
     tattgctaga agaatttaag tataagatcg aacaccaacc aagtaaaaat atgagtcatg      3060
     tagacgcgtt aagtcgttat ccagttttag awtgtaatgt aatcgataga cgagaagatg      3120
     gattaacaac acgattaaga aaagcacagg agaacgacag cgatatcaaa aaagttctcg      3180
     atcgagcgaa agcaaaacaa attgattttg tagtcagggg cgatttactt tttaaagaaa      3240
     tcggcggcga tttgcgcgta gttgtaccsa aaccaatgca gtcacaaata attcgacagg      3300
     cacatgagag aggtcatttc tctatagcga aaacggaagc acttttacgc aatgattatt      3360
     ggattccgaa tatcagaast aaaatcgaaa agatcataaa ttgcgtcgcg tgtatcttag      3420
     ctgaagaagc agggtaagca agaaggattt ctaaacccga tagaaaamgg ggaagttccc      3480
     ttagacatat catattgatc atgtaggtcc gtttccttcc accaaaaaga attataagta      3540
     tatmtttgtt gtaatagacg cgttttctaa atttgtgtgg ctttatgcaa caaaaactac      3600
     aaatgcaaac gaaattctag ataaactaac aaagcaatca attattttcg gaaacccgcg      3660
     tagaataatt tctgatcgtg gaacagcttt tacttcgaat aattttgccg aatattgctc      3720
     aaaagaaaac attgatcatg tattgactac taccggaata cctagggcta ggacaagtcg      3780
     agcgtgttaa tcgaattctt ataccgttat taacgaaact tgcggatcca aaacgcgaag      3840
     aatggcataa atatctagat tttgcgcaac aatgtataaa tacaacaata aacaggagca      3900
     taggcacgag tccattccat ttattattcg gtgtgcatgc gcggttaaga gataactttg      3960
     aaatccgaga attattagaa caagagcata ttgaaacata tcaaagcgag cgtgataaat      4020
     taagagaaaa agcgaaagaa aatatcgcca aaatccaaag cgaaaataaa cacggattta      4080
     ataaaaaaag agtcgccgct acaatatacc gagaaggcga tttagtagcg attaaacgta      4140
     cgcagcaagg ccctggtttg aaaatcgcaa ataaatactt cgggctttac caagtaattc      4200
     aagttctacg aaataatcga taatatgttg tgcagcgcga aggtgaacat gagggaccat      4260
     ataaaacctc acttcagcag attacatgaa accttggata agtaacgaat cagatactga      4320
     agataaaagt cgaaaattga tatccgggac gtatatcaac agcaggacgg ccgag           4375
//
ID   Gypsy-4_CFl-LTR repbase;    DNA;    INV; 440 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-440
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1016-1016 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 440 BP; 137 A; 73 C; 113 G; 117 T; 0 other;
     tgtaggatta gttatatgtg cgtatgttat atgtagtgtg tgcgtgcatg tatatgttag        60
     tatgtgtgtg aaatgtatgt cggcaaaaat acaaaagacg cgatcgaaat gatatcaatt       120
     gtcaaacgag agcgcgaggc tcattacgga gataagtctt cctttaagaa accgcgagac       180
     tagttcggag gcgaccagcg aaactagcga aacgatatca attgtcaaac gagagccgcg       240
     aggctcattt cggagataag ctttcttttt ggaaagccgc acaaaggatg cggcataaaa       300
     tataaatccg agtcctgagg aagaaggagt tcagttcgat tcgcgcagtc aagcgagcaa       360
     cgttagcaag tgcggaacgt attctttaaa taaagttatt ataccttatt gtgtgtgtgt       420
     taattgaggg caatcccaca                                                   440
//
ID   Gypsy-4_CoFl-I repbase;    DNA;    INV; 10268 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-10268
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2272-2272 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           969..3092
FT                 /product="Gypsy-4_CoFl-I_1p"
FT                 /translation="MSDVETNDTLGRGVQEAVRCTDIHETGPIDTDDEVIQ
FT                 INLEDDPETWTEWQKASKKQKLFMMKMLRKLTPSIKRGQLSHRQDISDNET
FT                 DAPSHTETHRPPVFEKLTSYTERENATTDMNRRVTNPHSDKTQAKHDTNLH
FT                 DIIREAAAQAVQQYTNRIPTPTQPKHQLSQQTYGEVTRRQTQMRTPVAQGE
FT                 QEIGNDGITHNTNHDNNYYRQNTAAPLYSAGEDELGWANRNYLNAQDRFTV
FT                 PPHYTGNPNYERPIQNTLSSLSHLAANIPIFDGDSVKLPLFEQMVRVVSWT
FT                 VSPVYEKFFIGSLANKLKEAAAEFIPRLAQFSSVDEFLVELKNRYXSIGSV
FT                 DTLLAKLKVVKQYRGELVEEYSRRVQKLYDRIITLYDSDTTLSPGQRHALK
FT                 ESAEKEAIKQYTYGIQSPYNYRVTCLNPKTLGEAIVAALKMESDLSLREIM
FT                 PARIEAQIYRARAETRDTDDRASSHEQAEVRDTTDKNKITGDYQYCSYCNE
FT                 YGEHATKVCMKLVADAANKRIQNPDIKANDPPVQVSQDKQNVRDKNCAYCK
FT                 RRGHYTSECRTLVRDAENGRINRSDGREQFNNDNRENTEGNFNYRNNYNYP
FT                 PNTYSQNYNNDYRRNPYNNTGYNRYNNYNRNADYSRNNNNNYNNQYGNYNN
FT                 YRGNYNYNRNYNRDENYNDRGPPNGTNDAPDEKISTRSTEHLNSQDARRAP
FT                 QAPSGPRE"
FT   CDS           3029..7429
FT                 /product="Gypsy-4_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="HGTFKLAGRSSCSPSAERAPRIEKEIEHKNETESAEG
FT                 EEQAESNKIRIGGKDSETSRKEKYTRNETIKVSLETDSEQAPQTAENAHKE
FT                 KRIETEFITSSPLAGKEKIHESMNLPLRKVNISSTGSTPPSVILNSNQLQS
FT                 YSAKFYADTGAEVSIIKECCLTTDTHIESREKVLITGVTHGARCTLGTTKI
FT                 PLNGIIMNLHVVPDTFPIEMEGIIGWDAFKLYNGLISAKENYLELKGIRIP
FT                 LLKPEYFKIPAKSRKIIFARIKDESSHVQVGWVPLQNIKEGILFGNFIGEN
FT                 KNLKIYAEIINITDKQIDVPVPEVNVFECETRQGAEPFSIAGDDAEGLNEA
FT                 MIGLFNTKNSDGKVKNNEIIKERNAVSGKNNDDIKNNIENFKDIKKSDIAA
FT                 RVSKIMEIVDTSGCNMEELNHIRDLIEYNPFVFGLDGEPLKATNLLKHRIT
FT                 TATEKPIVAKRVRYPIKLKEQMQVEIDKLLQQQIIEPSTSPYNSNMWIVPK
FT                 NVGPNEEKRWRVVTDFRLLNEITVGTCYPLPFQNEILENLAAAKYITVVDL
FT                 KSGFFQVEIHEEDAHKTAFSGPNGHYQYKRMPMGCIDSPSTFMRVITLALA
FT                 GLQGREIEVYMDDIMVFAENLEQHEIRFKRLLKRLADANLTIEPRKCQFLR
FT                 KEAKVLGHIVGNGQIKTNPEKIEAVKSFPKPTNARKMKQFLGLAGYYRRFI
FT                 KDYAKIAQPLSKLTRKTAEFKWEEEQEHAFIKLKNALCSEPVLRAPDINEP
FT                 FIVTTDASDYAIGAILSQGEIGKDHPCEYASRCLKGSELRYPTYDKELLAI
FT                 VYAKEQFRPYLFGRKFTVITDHEPLKHFHTSKKPDLRFTRLKAELRGYEFD
FT                 VVYRPGQKNKAPDALSRNPVLKEGEENPELPRRELYELAEKQERDNHEDIN
FT                 APPARIYKMRTKRQRNLIRKNRKVKIETSDSDEPDEKAIKKKPRKLRESEQ
FT                 VSSTHNCSSTDTGSEREMTEKLKDKADKNTLTAVNDKEKILSQGPADDKLA
FT                 YMCKEKNMEKGVKTTSTPFINKGVTEKTQHRTRKRQLDTLHRKIADFSNTA
FT                 EQPHNSKEIIIAHCDTPAATQRDTEQEKHWGYQLARNSEAAERAEKERERK
FT                 ARKAIGETAAAKTPDRDKESEGKSENKGGVHDQRESRAKGRQQVDERGTEM
FT                 TEQSRTAPNEHESQQPPDTQVPNGGNDKYNNNKGQITNLRSIFNESTNRFR
FT                 AKVSIDVEKKDIKGKEGIRIDVWESDSTPIAMNEEEDAKIRVSGTQCAEPH
FT                 RQLIMIDVPRDGSCLFHCLKLLYGLTESTDELREILRGSEWINKCKDPKGA
FT                 KQILNNSHEFGDRECAFIFSQEYEANICIHLQVSPDKIVYQQFMGGKDAEF
FT                 KHMHLRNQHYQALVEGTSGDHSPKYNNENQNDDSDTQEPRDNTEGNFEGDS
FT                 NDXAVNKQDEENDEEDAWDTESEEKSEREEEGVWEPNEKRIRPPPEPPPPP
FT                 DP"
XX
SQ   Sequence 10268 BP; 4215 A; 1982 C; 2029 G; 2039 T; 3 other;
     gctggtgtca gaagtgggat acagataaaa ttttttacgg tctgtcgcgt gcgcggaaat        60
     cacttagtct cgcggaacaa aaaaaaaaaa aatttttttt aattawtttt ttctcgactt       120
     aattgacgta ataaataaaa gaaataaaaa gaatatatct ctcgtcgcaa agaaaaaagt       180
     gtcaaaagtg ccagacgcca aattcagcgt gtcaagtgcc acaatataag ggaaattgga       240
     aaagtagagg agaacaggaa gatataatcg gaaaaatctt cgataccgca aggataccag       300
     acaaggaaaa actgcatatc aagccagtgg accaatatac caggacacta gaggcagcta       360
     ccgttcacta aacccgggaa aatacagaca aagagaagaa agcacggtac gccaagcccg       420
     gactacagcc acaggggaac acgggataca cggcacaggg gaagggaaca acgagcggaa       480
     gcagaagctg agcaactcca ggaaggatca aagaagggac ccataagtat gcacgggatt       540
     atcgtcatgc tgaccatcgt cacggcgatc tggtaagtga attttcatta ctcgtatata       600
     ctatactcat aacccccgag ggaaatacgc acctaaaaga aaaaacttat atatcgatat       660
     tatttctaaa tcgcaatatc ctaagacctt agcggcaacc cataattgca tgcacaagca       720
     tataaccgat acaaacgaca aacaccccat acaaaatttt taaattagtt aataaataca       780
     aggagtagcc aaccgaaaac aaaaacgaaa aaaaagacta tcgactaaca ctcgatagag       840
     cgcgcgtatc tatcaggtta acacaaagta cacagaaacg acggcgtttt acgattagaa       900
     aaatatatat acgaactaga aaagcacaag acgaactaca gaaaaaaaag agactaaaga       960
     gcaacactat gagtgacgta gaaacaaatg atacactggg aaggggagta caggaagccg      1020
     tgaggtgcac agatatacac gaaacaggac caattgacac agatgacgaa gtaatacaaa      1080
     ttaatctaga agatgatccg gaaacatgga cagagtggca gaaggccagc aaaaaacaga      1140
     agctttttat gatgaaaatg ttaaggaaat taacgccaag cataaaacgc ggacagttat      1200
     ctcatagaca agacataagc gataacgaaa ctgatgcgcc atcccacaca gaaacacata      1260
     gaccccccgt atttgaaaaa ttaacttcat ataccgaacg tgaaaatgcg acaactgaca      1320
     tgaatcgacg agtcactaat ccacatagcg ataaaacaca agccaaacac gacacaaatc      1380
     tacacgatat aataagagaa gcagcggcac aagcggtgca acaatataca aatcgaatac      1440
     ctacacctac acaaccaaaa catcaattat cacaacagac gtacggagaa gttacacggc      1500
     gtcaaacaca aatgcgaacc ccagtagctc aaggcgagca agaaatcggg aacgacggca      1560
     tcacccacaa tacaaaccac gacaataatt attatagaca gaacacagcg gcaccacttt      1620
     attctgcagg agaagacgag ttaggttggg caaatagaaa ttacttaaac gcccaagacc      1680
     gatttacagt acccccacat tacacaggaa atcctaatta cgaacgccca attcagaaca      1740
     cgctgtcgtc actaagtcac ctagcagcaa acataccgat atttgacggc gattccgtta      1800
     aactacccct tttcgaacaa atggtaagag tggtatcgtg gacggtaagc cccgtatatg      1860
     aaaaattttt tataggctca ctagcgaata agctgaaaga agcagccgcc gaatttatac      1920
     cgcgcctggc acagttctca tctgtagatg aattcttggt agaattgaaa aatagatacw      1980
     gcagcatcgg aagcgttgac acgttattgg caaaattaaa agtagtgaaa caatacagag      2040
     gggaattagt agaggaatac agcaggcgcg ttcaaaaatt atacgataga ataataaccc      2100
     tatacgattc ggacacgaca ctatcacccg ggcaacgaca cgcattaaag gagagcgctg      2160
     aaaaagaagc tataaagcaa tatacgtacg ggatacaatc accttacaac tacagggtaa      2220
     catgccttaa cccgaaaacg ttaggcgaag ctatagtagc cgcgctgaaa atggaaagcg      2280
     acttaagcct acgagaaata atgccggcac gaatcgaggc ccaaatatac cgagcgagag      2340
     cagaaacaag agatacggac gatcgtgcga gcagccatga gcaggcagaa gtacgcgaca      2400
     caacagataa aaataaaata acaggggact atcaatattg ctcatattgc aatgaatacg      2460
     gggagcatgc tacaaaagta tgtatgaaat tagtagcaga cgcagcgaat aagagaattc      2520
     aaaacccaga cataaaagca aatgatccac cagtgcaggt atcacaagat aaacaaaacg      2580
     taagggataa aaattgcgct tactgcaaac gcagggggca ctatacaagc gaatgccgca      2640
     cactagtaag agacgcagag aatgggagaa taaatcggag cgacggacgc gaacaattca      2700
     acaatgataa cagggaaaat acggaaggaa attttaacta ccggaataat tataattacc      2760
     cccctaatac gtatagccaa aactataaca acgattatag aaggaacccc tataacaata      2820
     caggctacaa cagatataat aactacaaca gaaacgctga ttactcaaga aataataata      2880
     acaattacaa caaccagtac ggtaactaca ataattatag aggaaattat aattataaca      2940
     gaaattataa tagggatgaa aattataacg acagaggacc tccgaatgga acaaatgatg      3000
     cacctgatga aaaaatatcc acgcgtagca cggaacattt aaactcgcag gacgctcgtc      3060
     gtgctcccca agcgccgagc gggccccgag aatagagaag gagatagagc ataaaaacga      3120
     aacggagtca gctgaaggag aggagcaagc agagtcaaat aaaatacgca tcggaggtaa      3180
     agatagcgag acatcacgca aagaaaagta tacgagaaat gaaacaatta aagtatcgct      3240
     agaaacagac tccgaacagg ctcctcaaac ggctgagaat gctcacaaag aaaaaagaat      3300
     tgaaacagaa tttataacta gtagcccttt agctggtaaa gaaaaaatcc atgaaagcat      3360
     gaacctacct ctccgcaagg taaatatatc gagtactgga agcacaccac catcagtaat      3420
     attaaacagc aatcagctgc aatcttatag cgcaaaattt tacgcggata ctggtgccga      3480
     agtatcaatt ataaaagaat gctgtctcac tacagacacg catatagaga gcagagaaaa      3540
     agtcctaata actggcgtca cacacggagc acgctgcacg ttagggacga ctaaaatacc      3600
     tcttaacggt ataataatga atctgcacgt agtccccgat acctttccga tagaaatgga      3660
     aggcattatt ggctgggacg cttttaagtt gtataatggc ctcataagcg ccaaagaaaa      3720
     ttatttagaa ttaaaaggca tcagaatccc attactaaaa ccagaatatt ttaaaatccc      3780
     cgcaaaatcg aggaaaataa tatttgcgcg tataaaagat gagagcagcc acgtacaagt      3840
     cggctgggtc cctctacaaa atataaagga gggaatctta tttggaaatt ttataggaga      3900
     aaataaaaac ttaaagatat atgcggaaat tataaacata acagacaaac aaattgacgt      3960
     gccagtacca gaagtaaatg ttttcgaatg tgaaaccaga caaggggcgg aaccattcag      4020
     catcgctggg gacgacgctg aagggttaaa cgaagccatg attgggcttt ttaacactaa      4080
     aaattcagac ggaaaggtga aaaataatga aattataaaa gaaagaaatg ccgtaagcgg      4140
     taaaaataat gatgatataa agaacaacat cgaaaatttc aaagatatta agaaatcgga      4200
     tatagcggct cgagtaagca aaataatgga aatcgtcgat acatctggct gcaacatgga      4260
     ggaattaaac cacatccggg atctcataga gtacaatccg ttcgtgtttg gcctcgacgg      4320
     cgagccacta aaggctacaa acttacttaa gcatcgaata acaacggcaa cagagaagcc      4380
     aatagttgcc aaaagggtac gctatccaat aaaactaaag gaacagatgc aagtagaaat      4440
     agataaacta ctgcagcaac aaataattga gccatcgaca tccccatata actcaaatat      4500
     gtggattgtc ccgaaaaacg tgggaccaaa cgaagaaaaa cgctggaggg tcgtaacaga      4560
     tttccggcta ttgaacgaaa taacagtcgg tacgtgctac ccactgccat tccagaatga      4620
     aattttggaa aatttagcag ctgcaaaata tataaccgtg gtagatctga agagcgggtt      4680
     tttccaagta gagattcacg aggaggacgc tcataaaact gcgttctcag gaccaaacgg      4740
     acattaccaa tataaacgaa tgccgatggg atgcatagac tcgccaagta cattcatgcg      4800
     agtgataaca ctggcactag caggcttaca aggacgggag atagaggtat atatggatga      4860
     catcatggta ttcgcagaaa acttggaaca acacgagata agattcaaaa ggctcttaaa      4920
     acggctagcc gatgcaaacc tcacaataga gccaagaaaa tgccaattcc ttagaaaaga      4980
     agcgaaagtg ctcggtcata ttgtaggcaa cggccagatc aaaacaaatc cggaaaaaat      5040
     tgaagcagta aaaagttttc ctaaaccaac aaatgcgagg aaaatgaaac aatttctcgg      5100
     gttggcgggg tactatcgac gcttcatcaa ggattacgca aaaatagccc aacctctctc      5160
     aaagcttaca agaaaaacag ccgaatttaa atgggaagag gaacaagaac atgcatttat      5220
     aaaacttaaa aacgctctgt gcagtgagcc agtgctgagg gctccagata taaacgaacc      5280
     ctttatcgta acaaccgacg catccgacta cgccatcgga gcaattttaa gccagggaga      5340
     gataggcaaa gatcaccctt gcgaatatgc atccagatgc ttgaagggca gtgaattacg      5400
     atatccgaca tacgacaagg aattattggc gatagtgtac gccaaggagc agttcaggcc      5460
     atatttgttc ggtcgtaaat ttacagtcat aactgaccat gaaccactca aacatttcca      5520
     cacatcaaag aaaccggact taagattcac aagattgaag gcagaactcc gtggatatga      5580
     gttcgatgtt gtttatagac ctggacagaa aaataaagca ccggatgctc tttctcgcaa      5640
     tccagtactc aaagaagggg aagaaaaccc agaactacca cgccgggagc tgtacgagct      5700
     tgcggaaaaa caggaaaggg acaatcacga agacataaat gcaccaccag cacgaatata      5760
     taaaatgcgt acaaagagac agaggaatct aatacgaaag aacaggaaag taaaaatcga      5820
     aacgtctgac tcagacgagc cagacgagaa ggcaattaaa aagaagccca gaaaacttag      5880
     agaaagcgaa caggtatcaa gtacccacaa ctgcagtagt acagacacag gatcagaacg      5940
     ggaaatgacg gaaaaactaa aagataaggc agataaaaac acccttacag cggtaaacga      6000
     taaagaaaaa attctgtcgc aaggaccagc ggacgataaa ctggcgtaca tgtgcaaaga      6060
     gaaaaacatg gaaaaagggg taaaaacgac gagcacacca tttatcaaca agggtgtaac      6120
     agagaaaaca caacacagaa cccgtaaacg acagttagat actctacata ggaaaatcgc      6180
     agatttttct aacaccgccg agcaaccgca caactcaaag gaaattatta tcgcgcattg      6240
     tgatacaccg gcagcaacgc agagggatac cgagcaagaa aaacattggg gttaccaact      6300
     agcgcggaat agcgaggcag cagaaagagc ggagaaagag agagagcgga aagctaggaa      6360
     agcaataggg gaaacagcag cagcaaaaac acctgacaga gacaaagaaa gcgaagggaa      6420
     atcggaaaat aaaggagggg tacatgacca gagagagagt agagccaaag gtagacagca      6480
     agtagatgag cgggggacgg aaatgaccga acaaagccga acggcaccga acgaacacga      6540
     gagccaacaa ccgccagata cacaggtacc caacggcgga aacgataagt ataataataa      6600
     caaaggtcaa attaccaatt taaggtcaat atttaatgaa tcaaccaatc gattccgagc      6660
     aaaggtctca atcgacgttg agaagaaaga catcaaagga aaagagggca taagaatcga      6720
     tgtatgggaa agcgatagca caccaatcgc aatgaacgaa gaagaggatg caaagattcg      6780
     agtatcgggg acccaatgcg cagaacctca cagacagcta ataatgatcg atgtccctag      6840
     agacggaagt tgtctgttcc attgcctaaa acttctgtac ggattgacag aatcaacaga      6900
     cgagctcaga gaaattctac gcgggtcaga atggataaat aaatgtaagg acccaaaagg      6960
     agccaaacaa atattaaata acagccatga attcggcgac agagaatgtg cttttatatt      7020
     ttcacaagaa tatgaagcaa acatatgtat acacctacaa gtatcacccg ataagatagt      7080
     ataccaacaa ttcatggggg ggaaagacgc agaatttaaa cacatgcatc tcagaaacca      7140
     acactatcaa gccctcgtag aaggaactag cggcgatcac tcacccaaat ataataatga      7200
     gaatcaaaac gacgattccg atacccagga acctcgagat aacacagaag gaaattttga      7260
     aggagatagc aacgaccamg ccgtaaacaa acaagacgaa gagaacgatg aagaggacgc      7320
     atgggatacg gagagcgagg aaaagagtga gagagaggaa gaaggagtgt gggagcccaa      7380
     cgaaaagcgc ataaggcccc cacctgaacc accaccccca ccagaccctt aaagcgactg      7440
     taagccatta actgaagaga atacaacgac gatagttata acaatatcaa taatgttaat      7500
     aataataatg atagtaatat aataataata ataataataa taataatgac agaagcaata      7560
     ctgagtataa gagtaataaa gatagtatac cgatatagta tattgtatag gaagacagga      7620
     tacacagaaa cgtacgtgta taaatatata taggaaaaag cgttgttttt cattaattcg      7680
     cggccctcgg acgagccgcg agagaaagca acaaattata cggaaagaaa atataaaata      7740
     actaataact acgtaaccaa cagacattca gacaattaac accccccttt tcctaaagga      7800
     acaatattga taaaatacaa aaaaaaaaaa ctttttctcg ttgtgacctt cggacgcacg      7860
     cgcaaaataa aggcgaagaa aaaaaattaa gaaagagaag agtatactta tgtgaaattt      7920
     tttttggctg tacaacatcc aacttacaga aaaatgagta ataggataaa agatagagtt      7980
     attgtatttt gcaaccctta aaaagaacag gcattgtcaa aaaaaaaaaa accaataaga      8040
     aatattgttt ataataagaa tattatatgt ttgtactcga aaccatagaa aaaaatataa      8100
     taagaataat aatgaatagg taaataataa taattattat tgttttctat aaaaaaaaaa      8160
     aacaatcaaa agaaaaacat tgttaacaat acaaaaaaaa aaagggattt aataacaaaa      8220
     taattacaag tacaattacg attaaatgtg acgcacttca gaacagtgtt attagtagat      8280
     tttaaaggac gtgagacatg caaagtttta acaaaaaaaa aagatcttat tttcaaatta      8340
     ttttgatttt aattatcaag aaatacagct gcaattgaaa aatttttacc aattgcgcac      8400
     tcagctataa tccgtcaagt actctattca tagccaatcc tgatattcct tacctactat      8460
     caaaatcaac ggttatcaga ggatgacaac aactactgaa aattctggag attcggttac      8520
     ataacaagac taaaataaaa ctgaacaagg gaaatagtca cacacattta gtatggaagc      8580
     catataagat aagatttccg ccactgtata agggatcaaa atcacaatta aatctgaaac      8640
     agcatttcac cacgacaata acagtagcat ctacatgcat agtcatacaa catagcagag      8700
     cctacagggg atagttctca acaaaacaaa aaaaaacata tacatacatt acatatgtac      8760
     atacatacgt gttatatggg aaaaacccta taatacgagt catcagtctc ataaacgaag      8820
     ccagaacatc ctaagcggac acctgtgata aaaattcctc aaaatccaca gtggacataa      8880
     aacataaatt gccagaacaa tggagcaacc ctgctacaga aacactacac aatactatta      8940
     gtgaatgcta gtactaccag ggcagaagag atacacacca gagaaaaaaa acaactcgat      9000
     tatgacaacg taaagggaag tcaaaaaccc tcgtattgtc tgacccagat atatgtatcc      9060
     agaaaaaaaa aaaaccaaac atttgcgaat catacggaaa tgaaaaaaaa aaaccaacaa      9120
     attaccgcca aaataccaac gaatttccta taaatttccc ttccaacaac gtacatggtc      9180
     accaatcaga gaaagaaaca aacatgtatt atagctgaga aatattttaa attgacatcg      9240
     gacgaaaaga aaaaaaaaca catttcatat atgattgaat cgcgtatgca atcaacacat      9300
     ccttcagagt ccactaatgt aagcaaaaaa aaaaaaaaaa aaaaaaaaac aatgttacat      9360
     ttaataagaa aattagtata agcattttgt acacgaaaaa aaaagttgtt acagaaaaat      9420
     aagaatttaa catgaggcca gaaaaatata atgtgtaaaa ggggtgcaaa acaaataagt      9480
     acctaatggc aaaatctatt agcatataat aaatattaaa caaatcattt ttaccctgtt      9540
     acgttgggtg caaagattca gcatattgac tcagcttgcc ttctctttct tatagcaata      9600
     gtcgaattta agtgccattc ccacgggggg ccccgctact gacttgttat agaatgattt      9660
     caggtaacaa gcgaaagaac accagtcgga gagccaacga aacgtcactg gacaatagtt      9720
     tggcattgaa accagcaata attttacagg aaggtatcaa gacaaatcta agtggcgtac      9780
     tgatacaagg gcaataattg tccaagcaac caaaacgaag aaaaaattta ttaataataa      9840
     aattaatgaa cgcagtaaga ccttgaccct cgacatcctt gacaaaaaaa aaaaaaaaaa      9900
     aaatatgaaa ctgacaatta tattaatttt tatccaatgc gagaataaac tgtttaataa      9960
     ccctgtatag tgcatatgta cataaataat aagcaagaaa actgtaatta agcgattata     10020
     taatataagt aactaagcga attctagaat aaattttttg tacaagggaa gcgtgcaaac     10080
     aataaacaaa aaaatgtata cacataaaat acagcgaatt aaaccagtag aggaaatagg     10140
     gatagagcgc ttcaaaccac cctctttcct ctaaccggaa aatgctatac aacacaaaca     10200
     acataacaca gacatacaca tcaaaaagaa aatcgccgcc gaggacgtcg gcgtcgcggc     10260
     ctcggacg                                                              10268
//
ID   Gypsy-4_CoFl-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-263
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2298-2298 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 263 BP; 87 A; 52 C; 73 G; 49 T; 2 other;
     tgttacgtac gatagcatat agctatgcgt gcgtgcgcct ctgctggctt gggcctgaaa        60
     ggtaggggaa tagagaagag aggtgatagg aaaggtagag agaagggaca gggagatcag       120
     ctagagacgc gagagggtaa ggacgaagtc cgcgagacga gaatacacgc acaacttccc       180
     tcaawkataa gtaattctaa taaagcataa gtaacaacaa gtcacgcttc tatttattcc       240
     cgcaccgaga atcccacgta aca                                               263
//
ID   Gypsy-4_CQ-I repbase;    DNA;    INV; 8328 BP.
XX
AC   AAWU01033212;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_CQ_;
KW   Gypsy-4_CQ-LTR; Gypsy-4_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8328
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 387-387 (2011).
XX
DR   Genome; AAWU01033212; Positions   25247   16920.
XX
CC   Positions [4723-5196] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           317..1543
FT                 /product="Gypsy-4_CQ-I_2p"
FT                 /translation="MEELNKLDSYFSLEIANLLEATPKSKEEIEQKTTEIA
FT                 EAVENYKQLLIASRDTLQPKEFNKINNGFKEDHKNLQEALEVFAKKLIIVS
FT                 DDEEKYGEVENLKIIPVSLKIHKNPKNPNSYEFPMDSAINCIPDFFGHAED
FT                 LTSFIDQINYFYSKMPKGVSHTPLINVIKLKLKGRAKFFANSISNLPWEKV
FT                 EQNMIEEFSVKKSSVNIFKTISTISQKQFEKFKSYKNRALEILADLESVED
FT                 FNKNSLVMKNFKLHFIAGLNNIELQRTARNIVETDFRQFLNTLEHHYVSDE
FT                 EFEDLQKHVQKMNIQTPTVKTNFGSQFKHYNNNNNGNLANNAPVFRNNYQQ
FT                 NYHRNNDNRNVTQENNRFRHQQQHRDFNQNHSNNRPNQNFNAHRGISSQQN
FT                 NMSNNSKTYYPQRKN"
FT   CDS           1933..5376
FT                 /product="Gypsy-4_CQ-I_1p"
FT                 /translation="MGSVIIELLIGNTIFSTKFYVMKNLPVPGIIGAEFLK
FT                 RHTLFIDKNFNFIVLQKPRLYFNNHYNKNEENLADINCEEISTSSDDENDG
FT                 NEENANIIAYCENNAQTYEIHNSPQSNFDDELCIPKELNLDIDKDCDVIEY
FT                 KKFKYVCGEERLKKLLETINLKHLNNENHDAIVFMIRKFNKLFFLEGDELT
FT                 FTNAAIHEIETTTNIPINKRQYRMPESTKTHIDEQIEEMLKLGIIQPSKSP
FT                 WNAPVLCIPKKVGADGKKKYRIVVKFRALNFITKPFVFPIPLINEILDNMV
FT                 DAQYFSSIDLKSGFYQILIHPKDAAKTAFSTWKGHYEFLRMPMGLKNSPAT
FT                 FQKLMNIILFEIQPVKAFVYLDDIIIFGNTIKEHNDNLFKILNALSRHNLK
FT                 VEPSKCSILKTQIKYLGHTIDKHGIRPTEDNINIIKNLKRPQNIKDVRSFL
FT                 GTVNFYGKFIPNMADKRKHLNNLLKKDVKFKWSEDCEKAFHDLKQCLMTEP
FT                 ILVRPNYNDTFVITTDASDYAVGAVLSNAKTNDNPIAYASRALSISEKKYY
FT                 TIEKELLAIVWAIEYFKHYIFNQQFIVYTDHRPLIAIWRLKETSPTLSKLR
FT                 LKIQGIGCDIRYKQGKENVVADFLSRIKHEDVEEINSENNLIAVVTRQQKR
FT                 QQKDSSNQIGNSKNLIIDDINIDITNDISQNEENLNETIDVLQTIDIGNEK
FT                 EDDSWKKYSLDDFFDAQNKDEIDFKLLKFTKTMLNESDADATFVILNSKTA
FT                 FKELSQLVDLPHGMKDYLYDNILSIPEHKMYGLIINGSVKSVTNIEELFNG
FT                 LVKSFENCPDFIKSVRNIQIVSFRNLQHNPDVNILRFIAGKYKKIFTLYAS
FT                 NDTRMFVKMEDRDTVLKEFHDSPLGGHVGGRRMLQRISPLFTWDNMRRDVE
FT                 NYVKQCELCQKNKIWPKHKIPMKITTTSTEPFQKIYMDIVILTISEDNNRY
FT                 GLVIQDDLTRFLVVAPLPDQESTTVARAFVEHFICRFGAPAEVVTDQGANF
FT                 MSNLLKHTCKILKIKKINTSAYHPQANLVERSNRELKTFLRNYIAGNPQTW
FT                 DQLLPFFTFQFNTTVNSSTGYSPFELLYGRQARIPNSVYNVTETELNYDDY
FT                 VTEMKANFKNIHDKAVQNVLASKHKRKEIYDKNAKTRIMK"
FT   CDS           5454..6425
FT                 /product="Gypsy-4_CQ-I_3p"
FT                 /translation="MSNLHIFSIKARESAPICSLTGYGTDHSRIFILEIVG
FT                 FTSPFRKKVSDENYDIFTYYNSKITVVENHIKNQLRNVYRNIMTESCKIDK
FT                 ALLETKLTLARLNPAEFVKSIIKRDGFTAVTAGEVLHIIECKPVFVTMRNA
FT                 ENRCFQEMPISYNNVSMFLAPVTRIIQDKGTEIDCSPLLPVKYVLGGRWYT
FT                 VDSRLRETYNPIILTSDLVTDWNYEAIPNLIETGIYNPESINKMRNMIFGQ
FT                 NAGRIAATIMYRTLAGQNPSHQGFKFDSLLASPIMDHELIRLLKAIMKGIS
FT                 IFSEISSFFLGTYIIIVQVIKIKNKLFGAVIG"
XX
SQ   Sequence 8328 BP; 3293 A; 1238 C; 1364 G; 2433 T; 0 other;
     aagtggtgac aagcggaaag tttcactctg aaactggaac gtcatttctg ctggcttaac        60
     cagttagaaa agttttgtaa tagaaaagta aagtgttaga agtgtcacaa gaatcttaaa       120
     atgataattt ggtaagtacc atttttttcc atatttttac taacaccttt tttatcgggg       180
     acttagagtt tttctgacca actcaaaact taaaaaaaaa cttgtggatt tctctaattt       240
     aggaaacagc ctgagagtct gcagaaaata atttactttt tttaaaagta agaaaaattt       300
     ccttccctga atcacgatgg aagaattaaa taaattggac agctattttt cgttggaaat       360
     agcaaattta ttggaagcta ctcccaaatc taaagaagaa atcgaacaga agacaacaga       420
     aatagcagaa gctgttgaaa attataagca actattaatt gcttcaaggg atactcttca       480
     acctaaagag ttcaacaaaa ttaacaatgg gttcaaagaa gatcacaaaa atcttcaaga       540
     agctcttgaa gtttttgcta aaaaactaat tatagtttct gatgatgagg agaaatatgg       600
     cgaggtagaa aatttaaaaa ttattcccgt cagtttaaaa attcataaga accctaaaaa       660
     tccaaattct tacgaatttc caatggattc agcaattaat tgcattccag atttctttgg       720
     acatgcagaa gatttaactt catttattga tcaaattaat tatttttaca gtaaaatgcc       780
     aaaaggagtg tctcataccc ctttgatcaa tgtaataaaa ctgaaattaa aaggtagagc       840
     aaaatttttt gcaaattcaa tttcaaattt accatgggag aaggttgaac agaatatgat       900
     tgaagaattc agtgtaaaaa aatcatcggt aaatattttc aaaacaatta gtacaatctc       960
     acaaaagcaa tttgagaaat ttaaatcata caaaaacaga gcattggaaa ttcttgcaga      1020
     cttagagtcc gtagaagatt tcaataagaa cagtttagtt atgaaaaatt ttaaacttca      1080
     tttcattgcg ggtttaaaca acattgaatt acagcgcact gcgagaaata ttgtggaaac      1140
     agattttagg caatttttga atactctcga acatcattac gtcagtgatg aagaatttga      1200
     agatcttcag aaacacgtac agaaaatgaa catacagaca ccaactgtga aaactaactt      1260
     cggaagccaa tttaaacact acaataataa taataacggt aatttggcga ataatgcacc      1320
     agtttttcga aataattatc aacaaaatta ccacaggaat aatgataaca gaaatgttac      1380
     gcaggaaaat aatagattcc ggcatcaaca acaacatcgt gattttaacc aaaatcattc      1440
     aaacaatcga ccgaaccaaa attttaacgc tcatagagga attagctcgc aacagaataa      1500
     tatgtctaat aattctaaaa catattatcc acaacgaaaa aactaatttt tggggttttc      1560
     gatagatttg gcgtccgaaa tacccggcaa aatggaaaat tcaatagacg ctctaatttc      1620
     cgagctcgaa atcgttttag gagacggaat tataatcgga ataatatttg gaataataat      1680
     agtttaagag agcaaagaga attttataac ccccctcacg aaattctcaa aataatttta      1740
     actccttttc tacaatttag attaagaatt gcttcaaaac aaaacccgtt taattttatt      1800
     cactacttgc ttgacacagg tgcaagtgtt aatataataa gaagcaatgt tttaaataaa      1860
     ataggttatt ctcatgtcaa ttttaaagat aatatttctt taactggcat caataatacg      1920
     tgtaatgaaa caatgggttc agttataatc gaattgttga ttggtaacac aattttcagt      1980
     acaaaatttt atgttatgaa gaatttacct gtaccgggaa ttattggtgc agaattcttg      2040
     aagagacaca ctcttttcat tgataaaaat tttaatttca ttgttttaca aaaaccaaga      2100
     ttatatttta ataatcatta taacaaaaat gaggagaatc ttgcagatat taattgtgaa      2160
     gaaatatcta cttcaagtga cgatgaaaat gacgggaatg aagaaaacgc aaatattata      2220
     gcttattgtg aaaataatgc tcaaacgtat gaaatacata attcacctca aagtaatttt      2280
     gatgatgaat tatgcattcc caaggaatta aacttggata ttgacaaaga ttgtgacgtc      2340
     attgaatata aaaagttcaa atatgtatgc ggcgaagaaa gattaaaaaa acttttagaa      2400
     acaattaatt taaaacatct aaataatgaa aatcatgacg ccatagtttt catgattcga      2460
     aaattcaata aattattttt cctcgagggc gatgaattga cttttacaaa tgcagcaatt      2520
     cacgaaatcg aaacaacaac aaacatacca attaataaac ggcaatatag aatgccagaa      2580
     tctacgaaaa ctcatattga cgaacagatc gaagaaatgc ttaaattagg aattattcaa      2640
     cctagcaaaa gtccttggaa tgctcctgta ctgtgcatcc cgaagaaagt gggagctgat      2700
     ggcaagaaaa aatacagaat cgtggttaag tttagagcat taaactttat aacgaaacca      2760
     tttgtttttc cgattccatt aataaacgag attctggata acatggtaga tgctcaatat      2820
     ttttcttcga ttgatttaaa atcaggattt tatcaaatac tcattcatcc aaaagatgcg      2880
     gctaaaactg cattttctac ttggaaggga cattatgaat ttttaagaat gcctatgggt      2940
     ctcaaaaaca gtccggcaac ttttcaaaag ctaatgaata ttattctttt tgaaattcaa      3000
     ccagtgaagg cttttgtcta tctggatgac attattatat ttggaaatac cataaaagaa      3060
     cataacgata atctgttcaa aattttaaat gctttaagtc gtcataactt gaaagtggag      3120
     ccgtccaaat gtagcatttt gaagacacaa attaaatatt tgggtcatac tattgacaaa      3180
     catggaatta gaccaacgga agataatata aatattatta aaaatttaaa acgtcctcaa      3240
     aacataaaag atgttcgttc gtttcttgga acagttaact tttacggaaa attcatacca      3300
     aatatggcag ataaacgaaa acatttaaat aatttactaa aaaaggatgt caaattcaaa      3360
     tggtcagagg attgtgaaaa agcatttcat gatttaaaac aatgcttgat gacagaacca      3420
     attttagttc gtccaaatta taatgataca tttgtgatta ctacagatgc tagtgattat      3480
     gctgtagggg cagtattatc aaatgccaaa acaaatgaca atccaattgc atacgccagt      3540
     agagcattaa gtatttctga aaagaaatat tatacaattg aaaaagaatt acttgctatt      3600
     gtatgggcta ttgagtattt taaacactat atttttaatc aacagtttat tgtctatact      3660
     gaccatagac cattaattgc aatttggaga ttaaaagaaa cctcaccaac tctttcaaaa      3720
     ttaagattaa aaattcaagg aattgggtgt gacattagat acaaacaagg caaagaaaat      3780
     gttgttgcag attttctttc tcgcattaaa catgaagatg ttgaggaaat taattcagaa      3840
     aataatttaa ttgctgtcgt gaccagacaa cagaaacgtc aacaaaagga ttcatcaaac      3900
     caaattggaa attcgaaaaa tctaattata gatgatatca acatagatat aacaaatgat      3960
     atctcgcaaa atgaagaaaa tttaaatgaa actatcgacg tattacaaac aatcgatatt      4020
     ggaaatgaaa aggaagatga ttcatggaaa aagtattctt tggacgactt cttcgatgct      4080
     caaaataagg atgaaattga ttttaaatta cttaaattta caaaaacaat gctaaacgaa      4140
     agtgatgcag atgccacatt cgtaatacta aatagtaaaa cagcatttaa agaattatct      4200
     caattagttg acctaccaca tggtatgaaa gattacttgt atgataatat tttatccatt      4260
     ccggaacaca aaatgtatgg tttaattatc aatggctcag ttaaatcagt aacaaacatt      4320
     gaagaacttt tcaatggatt agtaaaaagt tttgaaaatt gtcctgattt cataaaatca      4380
     gttcgaaaca tacaaattgt ttcgtttaga aatttgcaac acaatccaga tgtaaacatt      4440
     ttaagattta tagctggaaa atataaaaaa atattcacat tatatgcatc aaatgacact      4500
     agaatgtttg ttaaaatgga agacagagat acggtgttaa aagaatttca tgattcacca      4560
     ttaggaggtc atgtaggtgg aagaagaatg cttcaacgta ttagtcctct tttcacatgg      4620
     gataatatgc gtcgagacgt tgaaaattat gtaaagcaat gtgaattatg tcaaaaaaat      4680
     aaaatttggc caaaacacaa aattccaatg aaaattacga caacatcgac agaacctttt      4740
     cagaaaattt atatggatat agtaatttta actatatccg aagacaataa tcggtatgga      4800
     ttagtcattc aagacgatct tacgagattt ttagtagttg ctcctttacc ggatcaagaa      4860
     agcacgacag tggcaagagc ttttgtagag catttcattt gtcgatttgg tgctccagca      4920
     gaagtcgtaa cagaccaagg agctaatttt atgagtaatt tattaaaaca tacttgcaaa      4980
     atattaaaaa tcaagaaaat taatacaagt gcctatcatc cacaggcaaa tttagttgaa      5040
     cgttcaaata gagaacttaa aacgttctta cgaaattaca ttgcaggaaa tcctcaaaca      5100
     tgggatcagt tattaccatt tttcacgttt caatttaata ccacagtaaa ctcatctact      5160
     ggatattcac cttttgaatt attatatggt agacaagcta gaattccgaa ttcagtctac      5220
     aatgtcacgg agacagaact aaattacgat gattatgtta cagagatgaa agcaaatttt      5280
     aaaaatattc acgacaaagc tgtacaaaat gtattggctt caaaacacaa aagaaaagaa      5340
     atttatgaca aaaatgcgaa gacacggatt atgaagtagt ttttgaaggt ttagtaaaca      5400
     aaaccgttga tggaagtaat gaaaatgcca aacactttgc tgtttatagt accatgtcaa      5460
     atttgcacat tttttcaatt aaagcaagag agagtgctcc aatttgttcg ttgacaggtt      5520
     acggcacaga ccattcaaga atttttattt tagaaatagt gggatttaca tccccattta      5580
     gaaagaaagt ctctgacgaa aattatgata tattcacgta ttataattca aaaattactg      5640
     tagtggaaaa ccatattaaa aaccaactgc gaaatgttta tagaaatatt atgacggaat      5700
     catgtaaaat cgataaggct ttgctagaaa cgaaactaac actagctaga ttaaatcctg      5760
     cagaatttgt gaaaagtata ataaaaaggg atggatttac agcagtgact gcaggggaag      5820
     tattacatat tatagaatgt aaaccagttt ttgtaacaat gagaaacgca gaaaatagat      5880
     gttttcaaga aatgccgatt tcatataata atgtatcaat gtttctagct ccagttacta      5940
     gaataatcca ggacaaggga accgaaatag attgtagtcc gttattaccg gtaaaatatg      6000
     ttttaggagg tcgttggtac actgtagata gtagattaag agaaacatac aatccaatta      6060
     tactaacttc tgacttagta acagattgga attatgaagc aattccaaat ttgatagaaa      6120
     ctggcattta taatcctgaa agtataaaca aaatgagaaa catgattttc ggacaaaacg      6180
     ctggcagaat tgcagcaacg ataatgtata gaaccttggc agggcaaaat cccagtcacc      6240
     aagggtttaa attcgattcc ttattagcat cgccaataat ggatcatgaa ttaataagac      6300
     tattgaaagc gattatgaaa ggaatttcaa tattttcgga aatatcatca tttttcctag      6360
     gaacttatat aattatcgtt caagtaatta aaattaaaaa taaattattt ggcgccgtaa      6420
     taggataaca taaaaaagag ctcaagaaaa tcaaattaaa aaaaatatat aaaaaaataa      6480
     caaaaatgag atgcgaactg aatgaatcaa tgaatgaatg agtgtttata tggacaaggt      6540
     actgcagacc agaatgaatg tgtaaaagaa tgttttaagt atgataaatg gttcgacata      6600
     tccacaaaca aaattataat ttattatttt catttttttt attatataga aggtagttcc      6660
     agaataatta gtaaatatac aaaaaccagc gttaacgacc tatttccagc ataaaaagag      6720
     agagaggagg atgattccgc aagcgaaatc ttaggtaggc tactctcctt gtaataataa      6780
     ttattttttt tattttttta gccatgacaa gaaaggaata tatattatgg cacattaatg      6840
     accgagcctc gtaagcggta gatcggggtt caaaatcccg gctcggacca acacaactgg      6900
     tgatcttttc ccttctggat tcgattgctt agtaaaggga aggtagtgta tcgtcacaaa      6960
     ctggacctta tcacgacatc ataggtcgcc atgttaacat tagttgagtg aaaaactgcc      7020
     actgaatccg ctttgtaaat gccggctccg atactcttca cgggtattcc catcaggaac      7080
     tggggaagat ttactttaca catttaaaaa aaaggtaaaa tattcaactg ggcatagtaa      7140
     ttaataataa taataatgat aagaaaaatc aatacaatgc aacaatacaa tttaaaagat      7200
     cgtaaaatgt tttgaaatta agtgaaaaaa aaaaaacaaa tacacgttaa attataaacc      7260
     cacatacaca aacactacac ttattaaatt aagattccgg agttcaccaa tgggacatca      7320
     agatcaacaa gcatcgcaga agttcctcga gctctaacaa ttaatcgaaa acggttgagg      7380
     tatgatagga tttgtgaggt gaaaggtgaa acttgattca aatggattga taatctgata      7440
     attggaaaaa cgatggcaac agtgcagcaa taactttgtg tggaggaaag atatatctgt      7500
     tcaatcaaaa taaatgtgaa tggaaccgaa tactttatga acgattaact catgagacga      7560
     aggatgaaac atgatctgaa catcagatat agatcaaaac aattagatac tatacaatag      7620
     ctactcgtta caattggatg aaaccgtata atcacagttt aatgctgatc aaaacaaatg      7680
     aatggaactg caattcgcta caaattaaaa acaactgaat ggatagcaca gtgtattcac      7740
     acataaagga ttgacgcaaa tctccacaca atttcttcaa atatgctgga aaagaaacga      7800
     cataaacaga atggtatcag attaagttga caagaatcat tttcactgaa aaccaagcaa      7860
     tgacttgatt attttaaacc gtaagattga tattgaataa aagagtggat atgacaacaa      7920
     tataattttt tttcaacacg gaaggaacgt catcagccac aacatcaaca tcaaggttga      7980
     tagttttttt tcatcagcca caacatcagc gagatcatca attaataatc atcatcatcg      8040
     aacagaatca attgtaataa caatcaaaat taagttaaat attaagtcta accaatttcc      8100
     aacatatacc tagctgacag tagatgatcg tctttagcag acaaacatct agctcgtaag      8160
     tgtggggata tgaagcgacc ctcgccttac cagaaaaatt cacagtagat tttctctgtt      8220
     aaaaaacgaa aatattagga aaaggcgaat caggagagtt gtaagaaaaa ggaagacaaa      8280
     taaaaatcaa ttaggagcgt aggacgggaa aacccgacaa cactttta                   8328
//
ID   Gypsy-4_CQ-LTR repbase;    DNA;    INV; 650 BP.
XX
AC   AAWU01033212;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_CQ_;
KW   Gypsy-4_CQ-I; Gypsy-4_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-650
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 388-388 (2011).
XX
DR   Genome; AAWU01033212; Positions   16919   16270.
XX
SQ   Sequence 650 BP; 272 A; 71 C; 148 G; 159 T; 0 other;
     tgacccactt aagtggcacg cgcagaaagg tgcccgacga gaaacaaaca aataacaata        60
     tctgtgaaaa aggacaggca cgactggaaa ataaataaag attacattat ctatgggtta       120
     agtcataaaa ggactgcgac taatttctga gaaaaatctg agaattagag cgcggtggaa       180
     agaaatagaa catttatatt aggattttaa gagtgagaga aataaaatag gccaggatat       240
     tatgtataac ttggaaggat ttttagagtg gggggaaaaa taaataaaat aagaaaaaaa       300
     gagagttata tattgtagaa ttctgggaat taaggaaact tttcattata tcaagaaaaa       360
     tacaggttgg agtgggggtt gtaaatgaga caaaaatata ttatataagt tagaggaaga       420
     atttttggtg tgaaaccgaa aaggacggat atattatgca acatcaaaaa ctagagtggg       480
     ggtaaaaata taagatatta aataattaag taaataacta gatttagtat aaaaacccaa       540
     gctgaaatca aataaagtcg gtcagtaaat gagacagtga aagagagtga aagtgtttga       600
     tccgaaatat ccagtcgaag tgccttggac ttagccggct gcacgcttca                  650
//
ID   Gypsy-4_DAn-I repbase;    DNA;    INV; 5629 BP.
XX
AC   AAPP01018570;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DAn_;
KW   Gypsy-4_DAn-LTR; Gypsy-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5629
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018570; Positions   20668   26296.
XX
CC   Positions [3111-3614] - Reverse transcriptase
CC   Positions [4709-4957] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           909..2342
FT                 /product="Gypsy-4_DAn-I_1p"
FT                 /translation="MGLDHSDTEEASASTEVCTLCRTRTSSTEWFKTKCGH
FT                 SFHRSCIKTHFAKDRSCPVCKASCQGESVGRPDNVAQHTRQKQRVASSQVE
FT                 SVEQRVADMEGRGQTSSRESMESMLQDAVKRMQNELLTQLTEKMSLLIHSN
FT                 LAGWSQEAPRQGVANASPSFDHLLRVDAGQPSEVQEPVNPNYSPRSNLSDL
FT                 SHRPDKVSHIMNGWKLRFSGAEGGISVDNFIYRVQALTCQTLGGNFDILCG
FT                 NASALFEGKADDFFWRYHKSVRTVRWNDLCAALRRQFRDTRIDVDIREMIR
FT                 DRKQKERETVDSFYDAVVQLTDSLEDQMEERELIEILRRNLRPEIRHEILN
FT                 ISISSMSRLREICRKRECFLEELKKEQVYKKGPPFKSHVSELLEDSHDPTE
FT                 SEFFDEREGTVEAISLICWNCRKEGHRYQDCTATRKVFCYGCGARNTYKPS
FT                 CQRCLKNIQQNTQVVRSRTVLKAQGTNTENLEV"
FT   CDS           2628..4256
FT                 /product="Gypsy-4_DAn-I_2p"
FT                 /translation="MDTGAAMSCIGGRFAQEILGSGVPVRRVFSNISTADG
FT                 SRQNIVGRIKTGVEYKGRKELLELYIVPSLAQDLYLGIDFWNLLDLLPPDI
FT                 QISELSAHKISDEQRRSLQKVVEKFPSFEVSGLGKTSLLSHQIDVGVAKPI
FT                 KQRHFPVSPAVEKLLYAEVDRMLQLGVIEESDSAWSSPVVLVQKPGKVRLC
FT                 LDSRKVNAVSVKDAYPLPQIDGILSRLPKANFISSLDLKGAFWQIPLDQAS
FT                 RDKTAFTIPGRPLYQFKVMPFGLCNAGQTMSRLMDKVIPAALRNEVFIYLD
FT                 DLLIVSESYEAHMEILETVADCIRKPGLTINVKKSHFCVQQVKYLGHLIGE
FT                 GVIRTDPDKVAAIEKFPLPKTLRSLRSFLGMAGWYRKFIENFATIAAPLTD
FT                 LLKAKRKFSMTDEGREAFEELKRRLCSAPVLRSPDFNKPFYIHCDASKSGV
FT                 GGVLVQKTEDGDEYPIAYVSKKLNKAQRNYSVTEQECLAAIISVKRFRPYV
FT                 EGHEFTIVTDHASLKWLMNQTDLHSRLASWPLSCKLLDLRLSIGRGD"
XX
SQ   Sequence 5629 BP; 1682 A; 1088 C; 1354 G; 1505 T; 0 other;
     ggaataataa gaattaatat ctaaaataat tatggcgccc aactaagggg ccttactgta        60
     cagtgaagcc cactcaatag catgaaaata ctaaatctgt cctttctgtt ctatttctgt       120
     caattttccc agtcaggtgg gtcaactttc attcgcatag gaatgcagtg tttatacttt       180
     taaaaatagt aaaacctgac cacgaagaaa gtttggcaca cctgtctcct tgatttgtgt       240
     taaattacat aagtcaagcg cttcggactt aggcaatcaa cattcactat gtgttttggc       300
     taaccgcgct tggcgtagca atacctaatt taaattagat ctgacaagtc atcactgcag       360
     tataacagtg ctaatgcccg cgagcagtag cctggccgcg gtttggattt aggtctaatg       420
     tggtttgttt tatatttttt tgagtctgtt agattggaat gtgcttggaa ctacaatcct       480
     ataaaaatta ttagtagttg aggttggcca cgctataaat aatcgaacca ggctaaatga       540
     gcaaatcacc tttatctttc cttctatctt tctcagaacc tctcacgtaa acatacataa       600
     gagcttcgac aatgagctct tggttaagca tggagtaatt taattttcat atattatctt       660
     ttcgcaccca ttaaatatat acaaatctta caattataca tatcctgtcg tatatcttac       720
     aaataactat tactaatctt cccacgacta taaaggttgg aggattaaga agaaaagtta       780
     gttctacaga gtttgtaccg tttgatagaa aagtccgaga aatttcattt agttttcgat       840
     ttaagagaga cagaataata caacaaattt agctgttata tcccaagcag tcaagattta       900
     gttgtgaaat gggtctcgat cattcggata ccgaagaggc aagtgcttca acagaggtct       960
     gtacgttgtg cagaactcgt acttcgtcaa cggaatggtt taaaaccaaa tgtgggcata      1020
     gttttcatag aagctgtata aaaacgcatt tcgcaaaaga tagaagttgt cctgtctgca      1080
     aagcatcctg ccaaggagaa tctgtgggaa gaccagataa tgtcgcacag catacaaggc      1140
     agaaacaaag ggtcgcaagt tcacaggtag aaagcgtgga gcaaagagtc gctgacatgg      1200
     agggtcgagg tcagactagt agtcgcgaga gcatggagag catgctgcag gatgcagtga      1260
     agaggatgca aaatgagtta cttacacagt tgacagagaa aatgtccctt ttaattcatt      1320
     cgaatttggc aggctggagc caagaagctc cacgtcaagg tgtagccaac gcaagtccgt      1380
     cgtttgacca tctgctacgt gtagatgcgg gtcaacctag tgaggtgcag gaaccggtta      1440
     acccaaacta ttcacccagg tcaaaccttt ctgacctttc acatcgaccc gataaggtct      1500
     ctcatataat gaatgggtgg aagttgcgtt tcagtggtgc cgagggtgga ataagcgtag      1560
     ataattttat ttatagagtt caggctttaa cttgccagac acttggcgga aatttcgata      1620
     ttctctgtgg aaatgcaagt gcgctgtttg aaggcaaagc cgatgatttc ttctggcggt      1680
     accataaatc tgttcggacc gtgagatgga atgatttgtg tgctgctctt cgccgtcagt      1740
     tcagggatac gagaattgat gtagatatac gagaaatgat cagggatcgt aaacaaaaag      1800
     aaagggaaac tgtcgactcc ttttatgatg cggtggtcca acttacagat agcttagagg      1860
     atcaaatgga ggagagggag ttaatagaaa tccttcggcg aaatttaaga cccgagataa      1920
     ggcacgagat cttaaatatc tctattagtt caatgtcgcg gcttcgcgaa atttgtagaa      1980
     agcgggagtg cttccttgaa gaacttaaga aagagcaggt ctacaaaaag ggaccaccat      2040
     tcaagagcca cgtgtctgag ctccttgaag attctcatga cccaaccgaa tcagaattct      2100
     tcgatgagcg ggaaggtact gtggaggcca tatccttaat ctgctggaat tgcagaaaag      2160
     aaggacacag ataccaagac tgcacagcaa cacgaaaagt gttctgttat ggttgtggtg      2220
     ctcgaaatac ctacaaacca tcttgccaaa ggtgtttaaa aaacatacag cagaacaccc      2280
     aagttgttcg ttcgcggact gttctgaagg cacaaggaac gaacacggag aatctggaag      2340
     tatagatatc aatgaggtgg gtgttcctga ggatatcctt gaaccaactg agggcgcctc      2400
     agcaggatgg caccagagag tttctactac taataagttt actaacagtg ttacgagcaa      2460
     aaatagtaat aatttaataa ataaggatta cagctaagtc tagaaattca aacaggttaa      2520
     gaagattttg gagagtcacc aaagatttgt gtgcgctccg aaaaagttgt gtcgacaatc      2580
     ggccgtatgc atcagtaaca gttcttggca aggaagtgaa agggctgatg gatacaggag      2640
     cagcaatgag ctgtataggc ggacgatttg cacaagaaat cttaggaagt ggagttcccg      2700
     tgcgtagagt gtttagtaat atttcgacgg cagatggcag taggcaaaac attgtcgggc      2760
     gaataaagac aggagttgag tacaaaggcc gtaaagagct tttagaatta tatatagtcc      2820
     cttcgttagc gcaggatctc tatttaggca ttgatttttg gaacctgtta gacctattac      2880
     ctccagatat tcagatatca gagctgagcg cccacaagat ttctgatgag cagagaagaa      2940
     gtctgcagaa ggtagtagaa aagtttccat cgtttgaagt atcggggcta ggtaaaacaa      3000
     gccttctgtc gcatcagatc gatgttggtg ttgcaaaacc cattaagcag aggcattttc      3060
     ctgtctctcc agctgtagag aagttactct atgcagaagt agatcgaatg ctgcagctag      3120
     gagtgattga ggagtccgac agtgcctggt cgtcaccagt agtcctagtt caaaagcccg      3180
     gaaaggtcag gctttgtcta gatagtcgta aagtgaacgc ggtatccgtc aaggacgcat      3240
     acccgttgcc acaaattgac ggtatcctta gtcggttgcc caaagctaat ttcattagta      3300
     gtctagacct caagggcgca ttttggcaga ttccattaga tcaagcgtct agggataaaa      3360
     cagcattcac gatccccggt cgtccacttt accagttcaa ggtgatgccg tttggactct      3420
     gcaatgcggg ccaaactatg tcacgattga tggataaggt tatcccagca gccttacgaa      3480
     acgaggtctt catctatctc gatgatctcc ttatagtctc cgaaagctat gaagcgcata      3540
     tggaaatact tgagacagtt gcagattgca tccggaaacc aggtttgact attaatgtca      3600
     agaaaagcca tttctgcgtg caacaggtca agtatttggg acatttaatt ggggaaggtg      3660
     ttatacgcac agacccagat aaagtggctg cgattgaaaa gtttccattg ccaaaaactc      3720
     ttaggagctt gagaagtttt ttaggtatgg ctggctggta tagaaagttt attgaaaatt      3780
     ttgctacaat cgcggcaccc ttgaccgatt tgttgaaagc gaagagaaag ttcagtatga      3840
     cggatgaagg aagagaggct tttgaggaac taaagcgtag attatgttca gcgccagtcc      3900
     ttagaagtcc agatttcaac aagccttttt atattcattg cgacgcaagt aaaagcgggg      3960
     taggaggcgt tttggtccaa aagacagagg atggggatga gtacccaatc gcgtatgtat      4020
     ccaaaaagct caataaagct cagagaaatt actctgtaac tgagcaagag tgtcttgcgg      4080
     cgattataag cgtgaagcgc tttcgtccgt atgttgaagg ccacgagttc accattgtaa      4140
     ccgatcacgc atcgctcaag tggttgatga atcaaacgga tttgcattca cggttagcaa      4200
     gttggccctt aagttgcaag cttttagatt tacgattgag catcggaagg ggtgactgaa      4260
     tgttgttcct gatgcacttt cgaggctaaa cgaggacgaa ttagcgagca tagatgcctc      4320
     taatggcttg ttagtggata cttcctccga tcagtttcgt agtcctgagt atattggtct      4380
     gatagatagc gtaaaggcca attgctcgaa attcccagac ttaaaggttg tagacggctt      4440
     agtgtatatt cgctcagaac acgcaacagg tgagccgctc cacgacgtgt acatttggaa      4500
     gctttgggtg cccgttcagc tggtaggcga tgttttgaag aacgcgcatg atcatccact      4560
     tgcatctcac ggcggagttc acaagaatct agagcgaata aggcgctatt attactggcc      4620
     cggtttggta ggagatgtta aggcgtatat tggcgggtgt gagacttgta agaccaccaa      4680
     ggcacccaat agtcccctta gacctccaat gggtaaagcg ccagagtcgg aaagattctt      4740
     tcagcgaatc tatatcgatt tcctgggtcc gtatcctcat tcaaagagcg gaaatattgc      4800
     catttttata gtcttagacc acttttcgaa atttgtattc gtcaaggcca taaagaagct      4860
     ggaagcagcg gtcttaataa aatatctaat agaagaattg tttcatcttt gcggagttcc      4920
     ggagacaatt gtatctgaca acggctcgca attcagatag gagctttttc agaagctttt      4980
     gagagaacat agaatttctc acaagctgac ggctattcat tcgccgcagg caaatgcgtc      5040
     agaacgcgtt aaccgatcca taattactgc aatacgttct tatgtagaca ttagtcaaaa      5100
     agactgggac gcaaacttaa gcagcatttg ctgtgcttta aggtcagcta cccattcggc      5160
     aattggtacc tcaccctact atatggtgtt tggccagcat atggtaacgt caggtggaac      5220
     ctatgccttg ttaagatcac ttgaagtatt gcaggataga gggatatcct ttactagaga      5280
     agattcgctg gaattggctc gagggatggc aaagaaactt tcgcaacagc aggatagcaa      5340
     aaaccgagag cgttataatc tgaaatcgcg agaagtaaac ttctctaatg gtcaggaaat      5400
     atttcgccgc aactttaagc aaagttgctt tctaaccggc tacaacgcaa agttaggacc      5460
     agcattccta aaggcacgag tgcgacaaaa gttgggaaac tcgtaccatg aggtcgagga      5520
     tctccaaggt aaatttgtcg gacgctatca tgcgaaagat ttgcgccagt aattatggcg      5580
     ggatcagcct tgttgggttc accaccaagt cagatcttgg cgggggggg                  5629
//
ID   Gypsy-4_DAn-LTR repbase;    DNA;    INV; 1963 BP.
XX
AC   AAPP01018570;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DAn_;
KW   Gypsy-4_DAn-LTR; Gypsy-4_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1963
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018570; Positions   18705   20667.
XX
SQ   Sequence 1963 BP; 641 A; 359 C; 389 G; 574 T; 0 other;
     tgaggtctgt agcttagaac tacaggatca acgggtacta gcgccaccta tcgggcggta        60
     gctgttgcaa gtggcaacat tataatctat agtttatcgg caatctgcaa gactgcattt       120
     gcgttaacgt taagtctccc actaatccca gctctagcgc cggcaggaag ctactgctaa       180
     acgcaccatg ctttctttcc caaaccgcat cttgacctga aaggttgatt aaaaagtagc       240
     tgttcaaggc tgtccaagaa ggaagagaga agttggatcc gcttaagtcg caatccgatc       300
     ttgccccgat ccaagtcgag atttactagc tacacggatt taaagtgtaa agtggatagt       360
     agaagcgttc tggccagatt gtggtcatat taaatagtgt tttcccaggc ccctaagggt       420
     aagttcgaag agctgcagag caaagcgaat gaatatgctc tcacacaaac atttttatct       480
     cagggtaggg aacggtggct tggaataatc gccgtttacc tctgtcacgg agacagaagc       540
     agcaagcagg gcaaaattga tccccgcttc aagaagctca gtctattttc ggcatggttt       600
     ctatacagtt cggcgtgggc agaagtccga gtgcggcgag gaggggaaaa ctcccctaaa       660
     accccaaaaa aggtctaaag gtgtttctta tcggtttggg acctctaaga tcctttctcg       720
     tttaaataat tcagaaatgg cccaaacagc ataaatgcat tacgcgcaaa aatataatat       780
     atagaggaaa aaaccccgtt atagttaata ctaaataata tcgtaggtta aaatttctaa       840
     agtttaaaaa tgtaagttaa agtcaaatat aatgaataac aagattgata aggatttgta       900
     aaatttaaac atgttaaagt taaaaggaaa aaatgtgaat ataaaaagtg aattataagg       960
     ctacggaaag agaaaaaata tgcaaaagaa gatataaaat cacttatcag taggaagatc      1020
     ttagagaaaa attatgtgaa ggaggaattg gaaaaaaaag ttttcgtgca tgcaaatttc      1080
     ggtcgcttaa agacactaaa tattgtgcat ttaccgaatc ttttttgatg ttgttagttt      1140
     tttttattgt gtttgcctgc cagaatttca cagcaccacc gccaacgaat ggaagcgctt      1200
     tcgtcattgg aggaagttaa ggtgagcttt atttactatt tggcaataaa ccaactttga      1260
     ttccttttct accgaaattt tgttacacga tcacacgaat ataaatgagt ataaagaaat      1320
     aattttcctt aaaaatttat aaatattttt gaaaaacatt gaattgaatt gcgttagaat      1380
     gaaaacaata acgaagttac tttttaaata attatatcac atttcttttt gcatacttta      1440
     acctacattt ttttagaaag atttactgtt actttttatt ttcattagaa tattttatga      1500
     ttactaagaa tgaatatcct atctctccct gtattttatg aataaacaaa tattataatg      1560
     tctgagtaaa tacccacttt taactccatg ctgacccaag agccgtcgta agttcaagat      1620
     tctaaaaggg gcctggtgca tagctttgtc ggacgagcat tggccatggt agggagggct      1680
     gataacaccc cgtttacatc taggggcgtg gcatgtctag tgagaagtac tgtttcattc      1740
     tcttaaccat ctgtccgatt tttatgctat ctcatttccg gacgattcag gctagttacc      1800
     tattcgcacg cgataaattc taattatcaa agatacaaat gagcgcccgt aatctgaatc      1860
     ctccaaataa caccacgaca attgccgacg agatatagcc ggatttcaac gcgtgcggga      1920
     ttaacagatt gcaagaccac cagctcagac gttgttcgtt aca                        1963
//
ID   Gypsy-4_DAzt-I repbase;    DNA;    INV; 7665 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7665
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 758-758 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           855..2411
FT                 /product="Gypsy-4_DAzt-I_1p"
FT                 /note="gag."
FT                 /translation="MSIRWIASRRKDELQSLAKEFGLEESGTVEELRSRVT
FT                 AFVVRSGHSEVVQARLDELNAHFGNIPSPRDHRSPATSPGPERRSRREDDN
FT                 DERKLQLTVPELASTTRGPETDANGHRGSTTERSVSEDDRQNNPSKGPRRL
FT                 MMPELPSTSRGADANRQAIAIEALTIDDNRQYSTPQGSLTVSIPEPRNVVK
FT                 GSGGSITGYHTTTVEPSSSSGTHRAPQDYRXYRVGGELSYSVLADKLRKWG
FT                 LTFDGHEDPLSFIERLEERVDSYGGSPEQLPRAISGLLTGKAEGWFRTSQM
FT                 QTKSWTKFRSEFLDFFLPPRYFQRLEDTIRNRYQQPGEAFRDYLIVLRLMM
FT                 QRAQYTAEMELERVYENLLPEYQLFTRRHEFDSLETLTRLVTAYETARDRA
FT                 APKASDSLVASGRARTPYPDSQARRSAYRSYATEETQMTRNAEVANRVMTE
FT                 DDNRPLDVRRACRNCGEEGHFSNTCRNRQLLFCWECGRRGVRTLNCCRRSG
FT                 SGNGSGLQSAGTRMEMQSQRSQE"
FT   CDS           2333..6133
FT                 /product="Gypsy-4_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="TIRVGKRIRSPVGRDTNGDAVTEIPGVKHPLSLEHGR
FT                 IAALVTIEGKVLSATLDTGATRSFISRRVAQELQTENNKRVVHTRISLADG
FT                 TKKEATHALVTKVRLDQSETEVSLLILPTILDDIILGLDFLCGIQARIECG
FT                 RAYLQLAQRPLLSARSPTTLPHRRARKVTFADELPLQSNGPPTSTRHPGIV
FT                 PPHHPNMTTPSILVADDGPRIPAPGHSGTAEEEKATPPPAKMDCSLAHKPT
FT                 TSSSRTRENFVKTAGTPPDTTQANPLDRKSPHGHSDEAAPQSAPGQGTRVP
FT                 NKEDPQSESATLGEVGQSGRDRSFAHTPTDYRLEPKDDAQRARLRNPFRVI
FT                 RGENTVNLATITDVAADEVSPRTLPNPEPPPTPWAAEFLEQELAKFEGLEG
FT                 ISDIAQHTITMRDDKPVKQRYYPKNPAMQKIIDAQVDELLQAGKIEPSKSP
FT                 HSAPIVLVGKKTGDLRMCVDFRQLNARSVPDAYPLPRINHILERLRNARYI
FT                 STLDLKNGYWQIPMAKDSREYTAFTVPGRGLYQWTVMPFGLHSASATFQRA
FT                 LDSVIGPTMEPYAFAYLDDIIVIGSTLEEHVESLREVFRRLREAKLRLNKD
FT                 KCSFFQKSIVYLGHVISEQGIHTDPDKVAAVQRLEPPRTLKELRRCLGMAS
FT                 WYRRFVPNFAMVVQPMTSLLKKGKKWTWTEEQQAAFEDLKGKLTKAPILAC
FT                 PDFTEKFTLQTDASAYGLGAVLTQQMQGEERVIAYASRRLLKAEENYSATE
FT                 KECLAIVWAIRKLRCYLEGYHFDVITDHLALKWLNSIDNPTGRIARWALEL
FT                 QQYRFDIHYRRGSQNVVADTLSRQPIETLQRTREDPPKRTWLSRLGKRIQD
FT                 QPDKCPEFIVENGQIYRQLGNRPAEEDPLQWKLCVDNDQRRRVLLECHDHP
FT                 TAGHLGIRKTATRVAQRYYWPGLYRDVARYVQRCEICQKFKVSQTKPAGHM
FT                 YTRQAKGPFDVLCADFVGPLPRSKHGNTTLLVFFDQFCKWVELVPLRKATT
FT                 AQLEKAFRERILSTFGIPRKFVCDNGTQFTSRSFKSFCKLAGMELEHTAPY
FT                 TPQQNPTERANRTIKTMISQYIQGDQRTWDELLPELSLAINSSVSDTTGFS
FT                 PAFLVLGREPRLPGALYEEVTAGPGEEPEPPGDKATRLREIVKIVRENTQR
FT                 AAQEQSKTYNLRRREWRPSLGELVLIRQHHLSKATDNFAAKLAPKYEGPYS
FT                 VVKFISPNIVRLQLHQGRQRRTASLADLKAFHAGDPDEEDEVTTEPSPDQT
FT                 VGEPAE"
FT   CDS           6483..7664
FT                 /product="Gypsy-4_DAzt-I_3p"
FT                 /translation="MDLAESPSMPENPGMFRSGWKDRPTAECHDSEEEADV
FT                 PPDGRFAQGGVRAPLNHDIAALNRHLFLERGRGVDNTSPPPAYGSWLAPGE
FT                 PWPNAARFRTPNARPIEIDRPDPGSGRQPSARPGPRQATETASSCSPSQWP
FT                 PSSAVSADPRRAPPMAYQRHSVYAAMQPFMDEANGARSQASCDVTDTRRLC
FT                 QSMDPRPRPPSYVSLLDPEGQAIWNREGSVSPVGFIDHWGPPPRRYSDASE
FT                 VWSRSPSPECVEISDDEELTAADLEGQVSPSTEGRTSSDSGSPITVSDDSN
FT                 LSLPIGDAEMDELLSIFIQHPGLADLQDGVAWTEAPADWRVSSVDRTLPVS
FT                 LVNGIEALLRETVGPMRFRQLQDHAERRFQVTINGRRQVTVQLRTPRREEG
FT                 "
XX
SQ   Sequence 7665 BP; 1988 A; 2123 C; 2181 G; 1367 T; 6 other;
     gatggcgccc gagcagggac tctagatttg gggatcgaag tagccgccgg ggtcagaaag        60
     gcgtagatta gaagaaggaa tagaggagtt tgacaccaat aggaggtatg gcgggaccac       120
     accgagcaaa aggattaggg gcgccacgta ggctagcccc aaagtcggcc cggcggtgtc       180
     agtaacggac tgtcaacgtg acggcgaacg agcccggcga ccgcagcgta ggaagagtgt       240
     gagagagacg acaggagagc agctttagtc ggggcagagg aaaagctccg ctgcccgaga       300
     aacgccgcgg tttggatata taaggcgtac cccaagccaa agagagggac agtcaagttc       360
     gagaccgcga gcaagcaaga ccaacctgat caaccatcaa gatccttccg caggatcagt       420
     accgtgtaga aatatccttc cgcaggattc gtcgacaatc aagatccttc cgcaggatca       480
     gaaccgtgta gaaatatcct tccgcaggat tcgtcgacaa tcaagatcct tccgcaggat       540
     cagaaccgtg tagagatatc cttccgcagg attcatcaac aatcaaggtc cttccgcagg       600
     atcagaaccg tgtagaacat ccttccgcag gattcgtcga caatcaagat cattccgtag       660
     gatcagagcc gtgtagaaaa catccttccg cagggttaat caacgatcaa gatccttccg       720
     caggatccga gccgtgttta aaatccttcc gtggtatcgg agccgtataa aagatccttc       780
     tgcatggttc attccatcta tctaaagktc tttcgtcaac aaaagggcaa attctagaac       840
     agtttagccg cgcaatgagt attcgatgga tagcgtcgcg tagaaaggat gagctgcaga       900
     gtctggcaaa ggagtttgga ctcgaggaat ccggaacagt ggaggagcta cgaagccggg       960
     tcaccgcttt tgtcgtacgt agtgggcatt ccgaggttgt tcaagcgagg ctggatgaac      1020
     tgaatgcaca tttcggtaac attcccagcc caagggacca caggagtcct gccacttcgc      1080
     ccgggccgga aaggcgatcg agaagagaag acgacaatga cgagcggaaa ctccagttga      1140
     ccgtgcctga attggcgagc acgaccaggg gaccagagac cgacgccaac ggacaccgag      1200
     gatctacaac cgagcggtcg gttagcgagg acgaccgcca gaataatcct tccaaaggac      1260
     ctcgccgact aatgatgccg gagttgccga gtaccagcag aggagctgac gccaaccgtc      1320
     aagcgattgc aatcgaggcc ctaacgatcg acgacaacag acagtacagt acaccacaag      1380
     gatctctcac cgtgtccata cccgagccac gcaacgtagt caaaggatca ggaggcagca      1440
     ttaccggata ccataccact actgtcgagc cttcgtccag cagcgggacc caccgtgccc      1500
     cccaggacta ccgamcatat cgcgtagggg gagaactatc ctactcggtg ttggccgaca      1560
     aattgcgcaa atggggactg acgtttgacg gtcacgagga tcccttatcc ttcatcgagc      1620
     ggctggagga acgggttgac tcgtatgggg ggagccccga acagcttcct cgagctatat      1680
     ctggactgct gacgggcaag gcggagggat ggtttcgtac ttcacagatg caaaccaaat      1740
     cgtggacaaa gttcagaagt gaatttttgg attttttttt gcctcctcgg tactttcaac      1800
     gattggaaga tacgatccga aaccgttacc agcaaccagg agaggcattc agggattatt      1860
     tgatagtctt acggttgatg atgcagaggg cccagtatac cgctgaaatg gagttagaaa      1920
     gggtctacga aaacctcctg ccggaatatc agttattcac ccggcgacac gagttcgact      1980
     ccttggagac cctcacgcgt ttagtgacag catacgagac agccagggac cgggctgctc      2040
     ctaaggcttc agattccctc gtagcctcag gtcgggctcg aacaccatac ccagacagtc      2100
     aggccagacg atckgcctat cgwagctacg ccactgaaga aacccagatg accaggaacg      2160
     ctgaggtggc taacagagtc atgaccgaag atgacaaccg cccactggac gtgcgtcggg      2220
     cgtgcaggaa ctgtggggaa gaaggccact ttagcaacac ctgccgcaat cggcagttgc      2280
     tgttttgctg ggagtgtggt cgtcgcgggg ttcgcaccct aaactgttgt agacgatccg      2340
     ggtcgggaaa cggatcaggt ctccagtcgg cagggacacg aatggagatg cagtcacaga      2400
     gatcccagga gtaaagcacc cgctaagttt ggagcacggt aggatcgcgg cattggtgac      2460
     catcgagggt aaagtactgt cggctactct cgacactgga gcgactcgat cctttatcag      2520
     ccgacgggta gcgcaggagt tgcagacaga gaacaacaag cgggtcgtac acacccggat      2580
     cagcctggcc gatggaacga agaaggaggc aacacacgcg ttagtaacta aggtacgact      2640
     cgatcaatcc gaaacggagg tgtccttgtt gatactacca accatcctcg atgacatcat      2700
     attgggcctg gatttcttgt gcggcatcca agccaggatc gaatgcggcc gagcgtacct      2760
     ccagttggcc cagcggccgc tcttatctgc gcgttcgccc acgaccttgc ctcatcgtcg      2820
     ggcccggaag gtgacttttg ctgacgaatt accactccag tcgaacgggc caccaacctc      2880
     gaccagacac ccgggcatcg tgccacccca ccaccccaac atgaccacgc catcgatcct      2940
     agtggctgac gatggaccga ggattcckgc accgggccat agtgggaccg cggaagaaga      3000
     aaaggcgacg ccgccgcccg ctaagatgga ctgttcgcta gcccacaaac ctacgacgag      3060
     tagtagcagg acacgggaga acttcgtgaa gacggcgggg acacccccgg atacgaccca      3120
     ggccaaccca ttggaccgta agtcccccca cggacactct gacgaggcgg cgccacaaag      3180
     cgcgccaggt caaggaacca gggtaccaaa caaggaggat ccacagtcgg agtcagccac      3240
     tctcggagaa gtcggacaga gtggaaggga ccgctctttc gcgcatacgc ctacggatta      3300
     ccgcctcgag cccaaagacg acgctcagcg ggctcgcctg agaaatccct tccgggtgat      3360
     acgtggggaa aacaccgtga acctggccac catcacagac gtcgcagcgg atgaagtctc      3420
     tcctcggacg cttcctaatc ccgaaccacc tcccacaccc tgggcagcgg agttcctgga      3480
     gcaggagcta gcgaagttcg aagggttgga aggaatttcg gatatcgctc agcacaccat      3540
     caccatgcga gacgacaagc cggtaaaaca gagatattac cccaaaaacc cggcaatgca      3600
     gaaaatcatc gacgcacagg tggacgagct cttacaagca gggaaaatcg agccctcaaa      3660
     gagccctcac agcgcaccca tcgtactggt agggaaaaag acaggcgatt tgaggatgtg      3720
     tgtcgacttc cgtcaactga atgcccgatc ggttccggac gcctatccgc tgccgagaat      3780
     caaccacatc ctggagaggc tccgcaacgc tcggtatatc tcgacattgg atcttaaaaa      3840
     tggctattgg cagatcccca tggctaaaga tagccgggag tacacggcgt tcacggttcc      3900
     cggcagagga ctctaccaat ggacggtgat gccgttcgga ctccactcgg cgtctgcgac      3960
     ctttcagcga gcgctagaca gtgtcatagg tccaaccatg gaaccctacg cctttgccta      4020
     cctagatgac atcatcgtca ttgggtcgac tctagaagag cacgtagaga gtctgagaga      4080
     ggtgttccgc cggctgcggg aagcgaagct tcgactgaac aaagataaat gtagtttttt      4140
     tcagaagagc atcgtgtacc tcgggcatgt aatcagcgag caggggattc acacagaccc      4200
     ggacaaagta gcggcggtac aaagactgga gccaccaagg acactgaagg agctgaggcg      4260
     ttgtctgggg atggcctcat ggtacagacg atttgttcca aacttcgcta tggtggtgca      4320
     accaatgacg agcctcctga agaaagggaa gaagtggacc tggactgaag agcaacaggc      4380
     tgcatttgag gacctgaagg ggaagctgac gaaagcgccg atcttagcat gcccagactt      4440
     tactgaaaag ttcacgttac agacggatgc cagtgcctat ggcctagggg cggtgttaac      4500
     ccaacaaatg caaggggaag aaagggttat cgcttacgcg agcagacgtc tcctcaaggc      4560
     tgaagagaac tactcggcta cagagaaaga atgtcttgcc atcgtctggg cgatccggaa      4620
     gctgcgctgt tacctggaag gctaccactt cgacgttatt acggatcatc tggcgttaaa      4680
     atggctcaat tccatcgata atccgaccgg ccgaattgcg cgctgggcat tggagctcca      4740
     acagtaccgg ttcgacatac actatcggcg aggaagtcaa aacgtcgtgg cggacaccct      4800
     ttcgcgccaa cccatcgaga cgttgcaacg aacgcgagaa gatccaccca agcgcacctg      4860
     gttgagtcga ctgggcaaac ggatccagga tcagcccgat aaatgcccgg aattcatcgt      4920
     cgagaacggg cagatctatc gacagctcgg gaatcgtcca gccgaagagg accctctgca      4980
     gtggaagcta tgcgtcgaca acgaccagcg gcgacgcgtg ctactggaat gccacgacca      5040
     cccgaccgcg ggacacttag gtatccgcaa gacggcgacg cgggttgcgc agcgatacta      5100
     ctggccagga ctctaccgcg atgtcgcccg atacgtacaa cgatgcgaaa tctgccagaa      5160
     atttaaggtg agtcaaacca aaccagcggg acacatgtac acccgccagg ccaaaggtcc      5220
     gttcgatgtc ctgtgtgcgg atttcgtagg accacttccc cgctcgaagc atgggaacac      5280
     gacactccta gtgttcttcg atcagttctg caagtgggtg gaactcgtac ctctacgaaa      5340
     ggccaccacc gctcaactgg aaaaggcgtt ccgggaacgg atcttgagca cgttcggaat      5400
     tcccaggaag tttgtatgcg acaatgggac gcaattcacc agtcgttctt tcaagagttt      5460
     ctgcaagttg gcggggatgg aactcgagca cacagcgccg tacacgccgc aacagaaccc      5520
     aacggaaaga gcgaaccgga caataaagac tatgatctcg cagtatatcc aaggagacca      5580
     aaggacgtgg gacgagttgc tgccggagct gagtctggca atcaatagta gcgtgtcgga      5640
     caccacgggg ttcagccccg cattcctagt attaggtcgc gagccccgac ttccgggagc      5700
     tctctacgag gaagtgactg caggaccagg agaggagccc gagcctcctg gagacaaagc      5760
     gacccgactg cgagagatcg tcaagatagt ccgagaaaac actcaacggg cggcccagga      5820
     acagagtaaa acgtataatc tgcgtcgacg cgagtggagg ccctcgttag gggaacttgt      5880
     cctaatccgg caacaccatc tgtccaaagc cacggataat ttcgccgcca agttagcccc      5940
     caagtacgaa ggaccgtact ccgtggtcaa gtttatctct cctaatatag ttcggctaca      6000
     gttgcaccaa ggacgacaaa ggaggaccgc cagcctagcc gacctgaagg cattccacgc      6060
     aggggacccc gacgaagaag atgaagtaac caccgaacct agccccgacc agacggtggg      6120
     ggagccagcc gagtgaccag agaccagcgg gttcaagagg gccacttgtg gtagcgcgct      6180
     gccacaacgt cctcgcctca aaaggggcac acatcacata gtagggctac gtagcgatcc      6240
     ccttctggga ttagttaagg tacaagctgt catagttagt tgcaccgctc aggcaggatg      6300
     agtcataagg tatagaactt aggcgaggat taaccatcga agatcctatc ccaacaggca      6360
     tacgccccat cctgaagagg aggcacctcg acggtgaccg atccaccgag gcagaggatt      6420
     tcgtcccgga cgatcaacca agcacctcca gggcccacgt ccaaggagag atcctccgac      6480
     ggatggacct ggctgagtcc ccctcgatgc cagagaaccc gggcatgttc cgtagtggat      6540
     ggaaggatcg tccgaccgcc gagtgtcacg actccgaaga agaagcagat gtccccccgg      6600
     acggacgatt tgcgcaagga ggggtccgag caccgttgaa tcatgacata gccgctctga      6660
     accgccacct attcctggag cgcgggcgag gagtggacaa cacgtctcct ccaccggctt      6720
     atgggtcctg gctggcacct ggggaaccat ggccaaatgc agcacggttc cgaaccccaa      6780
     acgctcggcc catcgagatc gatcggccag atcccggtag tggccgtcaa ccttcggccc      6840
     ggccggggcc acgacaggcc acggaaacgg catccagctg ttcaccaagc cagtggcctc      6900
     caagcagcgc agtttcagct gatccacgca gggccccacc gatggcctac caaaggcact      6960
     ccgtatacgc cgccatgcag ccgttcatgg acgaagcgaa cggggcacgg agccaggcat      7020
     cgtgcgatgt aacggataca aggcgtcttt gccaaagtat ggatccccgt cccagacccc      7080
     cgtcctacgt gtcgttgttg gaccccgaag gtcaggccat ttggaaccga gaagggtcag      7140
     tgtcaccagt ggggttcatt gatcactggg gaccgccccc tcggcgatat agtgacgcca      7200
     gcgaagtktg gagccgctct ccttcgccgg aatgcgtcga aattagcgat gacgaggaac      7260
     tgaccgccgc cgacttagag ggacaagttt cccccagcac tgagggacgg acttcttccg      7320
     actccgggtc cccgataacg gtgtcggacg actcgaattt gtcacttccc ataggagatg      7380
     cggagatgga cgagctgctg agcatattta ttcagcatcc tggcttagca gatctacaag      7440
     atggagtcgc atggacagag gcgcccgccg attggagagt atcctcggtc gataggactt      7500
     tgccggtaag cctcgtcaac ggcatcgagg cgcttctgcg ggaaaccgtg gggcctatga      7560
     ggttccgtca gctgcaggac cacgcggaaa ggaggttcca ggtaacaata aatggcagac      7620
     ggcaagtaac cgtccaattg cggacacccc gaagagagga gggag                      7665
//
ID   Gypsy-4_DAzt-LTR repbase;    DNA;    INV; 1416 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1416
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 808-808 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1416 BP; 400 A; 322 C; 438 G; 256 T; 0 other;
     tgtaagggag ctaagggata gtcccttaca acacaagagc agacgacgga catcgtaagg        60
     aggatacacc gatcgcagga tggaacgtta actaatttta agattgaaac attattgaag       120
     ttttaggata aggtagaaag taattcgagc ataattatac ggcatggagc caatttccgt       180
     agggtgtcat tataaggaga aggggggggc cagcaacaac gagtgtcaca gcaaccaggc       240
     cgccgtcacg gagcagttgg gcgcgaagag ggaacgacga gcgacgagag cacagaacga       300
     gcaggtgagc acggaggaac gagcgcgagg agagaggatc aagcggcgag agcacggagc       360
     gagcagggga gcacggagga atgagcacga ggagagagga tcaagagagg agaagatgga       420
     acgagcggtg gagcacggag gaacgagcgc taggagagag gagcaaacga gaggagaata       480
     gaacgagcgg tggagcacgg aggaatgagc aaagggagag aggcttgagg agaaaggaaa       540
     aggagacaac caggaaaaag aaaaaaaaag gaggagagat cgcgggacgt gagacggaac       600
     ggtcgtgcgc gcgggagccg agattggact tgggcgacaa aaaaagagtg aggagatcag       660
     aaaagacgaa aatacggtgg tacacaggaa ggacggaaaa caagatgact ggaggatcca       720
     agcgagggaa gaacggagag aatgggggta agctggcctc ctcgaaatga aaagaggaaa       780
     gtaaagagga gttttagcgg tgcctaagta gggaagatag ggccagagtt gaacgaccga       840
     ataaatgaag atttacatat atgttactct gttttcgtta atttgggcga aagctccctg       900
     cactgtacac tcttttcccc tttctatgaa cccccctaga aggtggaagg gacaccacgg       960
     cgctcctccg cgcgttcgct gggcccccgt gtgttctttc catccctcac ccccctttcc      1020
     ccccccgtgg cgagaggaac attacacttt ccgcgtgtcc gctgggtgcc agtgtgtcct      1080
     ctcgaccccc tcaacccccc ttcttttcca tttgaataca atcgtctgct tgacttgctt      1140
     ccgctttccg cgctttgcgt gccccttgcc tggagacgag aacatgcctt atcctccgat      1200
     gtcgtcatct agcgttcaca cgggtgtgga cgcccacccc ctttctctag cggtctcttt      1260
     gtttgtggcc gctacgccgg ctgacgaatc cccgacggtc agtccgatcc ggtgggtccg      1320
     ctatttcgcc cccagattta cagtcaccga tgaaatgtga agttctgtga gaccctggac      1380
     aggctgagag ttacacctcg gcggaactac cttaca                                1416
//
ID   Gypsy-4_DBi-I repbase;    DNA;    INV; 6045 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DBi_;
KW   Gypsy-4_DBi-LTR; Gypsy-4_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-6045
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 827-827 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3899-4366] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           421..1404
FT                 /product="Gypsy-4_DBi-I_1p"
FT                 /translation="MPFKGDPETLYTFISRVDYVISLYQTNDVRQQRILLG
FT                 AIERNLDGHVTRSLGLPNIEDWPTLRSRLIAEFKPQTPNYKLLENFRETPY
FT                 KGNLRAFCEEAERRRQLLISKLHLEGNQSDFLIYVQAIKDSIKILIRKLPI
FT                 QLFTILAHHDIADLRSLITIAQNEGIYEEHINFELNKNTENRNKNANPTQN
FT                 SKSHKFNTNTQIPYQPSYPQYSQPFQPNYNQYMQSFRPTYTQQIPYNQAMW
FT                 HVPNHFGPNQYMNTQPITHKNPFPQHSNKIQTPQTAHFKGNTYPQQQQPST
FT                 SKNTNFPVTKRLRPSDSEQTKMSIDELRFQDVHEYE"
FT   CDS           2150..4642
FT                 /product="Gypsy-4_DBi-I_2p"
FT                 /translation="MLNQGLIRESNSPYNSPTWVVPKKTDASGKIKYRVVI
FT                 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDPESI
FT                 SKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDI
FT                 IIFSTSLTEHLNSLQLVFSKLAEANLKLQLDKCEFLKKEASFLGHIVTPNG
FT                 IKPNPLKVKAIVSYPIPTKVKEIRAFLGLTGYYRKFIPNYADIAKPMTRCL
FT                 KKGAKIDTQNLDYIEAFKKLKALIIREPILQLPDFEKKFTLTTDASNLALG
FT                 AVLSQNGHPISFISRTLNEHELNYSAIEKELLAIVWATKTFRHYLLGRHFL
FT                 IASDHQPLRWLHTLKEPNAKLQRWRAKLNEYQFKIDYIKGKENSVADALSR
FT                 IKIEENHHSEVTQHSADEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVENS
FT                 TIFGNSITTIQYNEMTFEKAKQILLDYFIHKNISIYIESDVDFELIQRAHR
FT                 EIINTTYTKVIRSLYLLKNVCSYAEFKEIILQSHEKLLHPGIQKMTKLFKE
FT                 NHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPFKITPNPEHCRDKFVVD
FT                 IYSSEGKHYISCIDIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPKLLK
FT                 ADRDGAFSSLTLKRWLEAEGIELQLNTAKNGVADVERLHKTINEKIRIINS
FT                 SDDEEVKLSKIETILYTYNHKIKHDTTGQTPAQIFLYAGHPILDTQNIKER
FT                 KIDKLNEDRQEFNIDTRYRKGPIQKGKLENPFKANKNVEKIDEDHYKITNR
FT                 NRETKYYKTQFKKQKITNAVKLPQEPSVQ"
XX
SQ   Sequence 6045 BP; 2486 A; 1139 C; 816 G; 1604 T; 0 other;
     gtcggtagga tacaaaaagt atccgaaaaa aagaacctcg agtgaaaaat aaattcaatt        60
     ttataattca gttctcgatt aacaattacg cgacccttca acccttcaac ttggattata       120
     attccaattc ggttgtccaa caaaaagtgg aagtataaaa caaaaaaaaa ctcaataagt       180
     ccaaaggcaa ctagcagtta aaaagagaaa taagtataac atataaaaat taaagaaaaa       240
     ttaagtccaa caaaactaaa acttaaataa gtgaaatcaa aataaaaata aaacaaattt       300
     ttatttttac tgtaaacaaa actttacaat aacaatggta ccaccagtta tcgccgcgcc       360
     caaatcgtgg cgctaaacga caacaatctt gctgaagctc gtcggcaact taaagacatc       420
     atgccattta agggtgatcc agaaaccctc tacaccttca tcagcagagt ggactatgta       480
     atttcactct accaaactaa tgatgtgcga caacagagga ttctacttgg agctatcgaa       540
     agaaacttag acggacacgt aacacgatca ttgggccttc cgaacatcga agattggcct       600
     acccttagat cgagactaat tgcagaattt aagccgcaga caccgaacta caaactactg       660
     gagaacttca gggagacacc ttataaggga aatctgagag cattctgcga agaagcggaa       720
     agacgacgtc aactactaat ttcaaaattg catctggaag gtaaccaatc agattttctt       780
     atttatgtgc aggcgattaa agattccatt aaaatactga ttagaaaatt accaatacaa       840
     ttatttacta ttttggctca tcatgatatt gcagacttaa gatcattaat tactattgca       900
     caaaatgagg gaatatatga agaacatatt aattttgaat tgaataaaaa tacagaaaac       960
     cgtaataaaa atgcaaaccc tactcagaat tcgaaatcac acaaatttaa tacaaatacc      1020
     caaatcccat atcaaccaag ttacccacaa tattcccaac cattccaacc taattataat      1080
     caatacatgc aatcatttag acccacctat acacaacaga ttccttacaa ccaagctatg      1140
     tggcacgtac caaatcattt cggtcccaac caatacatga acacacaacc aataactcat      1200
     aaaaatcctt tcccacaaca ttccaataaa attcaaactc ctcaaacagc acattttaaa      1260
     ggaaatacat accctcaaca gcaacaaccc tccacatcta aaaacactaa cttcccggtt      1320
     accaaacgac taagaccatc ggacagtgag caaactaaaa tgtctattga cgaattgaga      1380
     tttcaagacg tgcacgaata cgaatgaggg caacaacagg tacaatccat ccaaaataca      1440
     aatgatcaaa atcaaaatag ctcagagcca aacgaaaatt ttcggttaac agccccggac      1500
     aacaccagta catagaaata gcatacaaag gttgcacata caaatgcctt atagacacag      1560
     gatccacaat aaatatgatc aataaaaata tatttcatct tcctatacaa aatactagat      1620
     gtgaagtttt gacatcaaat ggtcctatta cgttaaacaa cttgattatg ttacccagca      1680
     atagtatttt taaaacaaat gaaccatttt atgtacacag tttttctaat aattacgata      1740
     tactgattgg cagaaaattg ttgaaaaatg cacaatcaat tataaattat aaaaatagca      1800
     cagtaaccct ttttgataaa acatacaaat taattacttc aaaatcagat aaaaaccaaa      1860
     atttttatat tcaaaaggca ccagaaacaa ataaaaattc agctcaggaa tcaataaaaa      1920
     aatagatttt gaattatttc gattagatca cctaaatcag gaggaaacta caaggttgaa      1980
     aggtttatta aataaattca aaaatcttca atatgaagaa ggagacaatc taacatttac      2040
     aaacaccatt aaacacgtac taaatacaac acataattcc ccaatttatt caaaacagta      2100
     cccacttgct caagcacacg aaattgaagt cgaaaaccaa gtgcaagaaa tgcttaatca      2160
     gggattaatt agagaaagta attcaccata caatagtcct acctgggtag taccaaaaaa      2220
     aactgatgct tctggtaaaa ttaaatatag agtagtaatt gattatagga aactcaatga      2280
     aataaccatc cccgacagat atccaatacc gaatatggac gaaatcctcg gtaaactagg      2340
     aaaatgccaa tattttacta ctattgattt agcaaaggga tttcatcaaa tagaaatgga      2400
     cccagaatca atatctaaaa ctgcattttc caccaaaagc ggtcattatg aatacctccg      2460
     aatgccattt ggtcttagaa atgcacccgc tacttttcaa aggtgcatga ataatatcct      2520
     tcgaccgttg cttaacaaac actgtttagt gtatttagat gatattataa ttttttccac      2580
     gtcccttacc gaacatttaa attcattaca actagttttt tccaaacttg cagaagctaa      2640
     tttaaaattg cagttagaca aatgtgaatt cttaaaaaaa gaagctagct ttcttggtca      2700
     catcgtaacc cctaatggca taaagccaaa cccccttaaa gttaaagcca tagtttcata      2760
     tccaattcca acaaaagtaa aagagatccg agcattcctt ggattaaccg gctattatcg      2820
     taaatttatc ccaaactacg cagacatagc caaacccatg accagatgtt taaaaaaagg      2880
     agcaaagata gatacacaaa atctcgacta catagaagca ttcaaaaaac ttaaagcttt      2940
     aattattaga gaaccaattc ttcaattacc cgatttcgaa aaaaaattca ctttaaccac      3000
     agatgccagt aatttagccc ttggagccgt gctttctcaa aatggccatc ctatatcctt      3060
     tattagcaga acactcaatg aacacgaatt aaattacagt gctatcgaaa aggagttact      3120
     cgccatagtt tgggccacta aaacttttcg acattattta ctaggacgac attttctcat      3180
     tgctagtgac catcaacctc ttagatggct gcatacatta aaagaaccga atgccaagtt      3240
     acagagatgg agagctaaat taaacgaata ccaatttaaa atcgactata ttaaagggaa      3300
     ggaaaattca gttgctgatg cattatcaag aattaaaatt gaagaaaatc atcatagcga      3360
     agttactcaa catagtgcag acgaagacaa tagcaatctt attcatttaa cagaaaaacc      3420
     aataaattat ttcaagaaac aaataatttt cattaaatct gataaaaata aagtagagaa      3480
     ttcaacaata tttggtaact ccattaccac aattcaatat aatgaaatga cattcgaaaa      3540
     ggccaaacag attttacttg attattttat tcataaaaac atttccattt atattgagag      3600
     cgatgtagat tttgaactta ttcaaagagc acacagagaa attattaata ccacctacac      3660
     taaagtaatt cgcagcctct accttttaaa gaatgtttgt tcatatgccg aatttaaaga      3720
     aattatactt caatcacatg aaaaactctt acatcctggt atacagaaaa tgacaaaatt      3780
     atttaaagaa aatcacttct ttcccaatag ccaattatta attcagaaca taataaatga      3840
     atgcaacata tgcaatctgg ctaaaacaga acacagaaac acaaaaatgc cttttaaaat      3900
     cacacccaac cctgaacatt gtagagacaa atttgtagta gatatttatt catctgaggg      3960
     aaaacattac atcagttgca ttgacattta ttctaaattc gctacacttg aacaaattaa      4020
     aacaaaggac tggatagaat gcaggaacgc gctaatgcgt atttttaatc agttaggtaa      4080
     acccaaatta ctaaaggcag acagagacgg agctttctcc agcttgactc ttaagcgatg      4140
     gcttgaagca gaaggaattg aattacaact caatacggca aaaaacggcg tagcagacgt      4200
     cgaaagactt cataaaacaa taaatgaaaa aatccgaata atcaattcat ccgatgatga      4260
     agaagtaaaa ttaagcaaga tagaaacaat cctttacaca tacaaccata aaattaaaca      4320
     tgacactact ggacaaacac ctgctcaaat attcttatac gctgggcatc caatattaga      4380
     cactcaaaat attaaagaaa ggaaaataga taaactaaat gaagatcgac aggaatttaa      4440
     cattgacact agatacagaa aaggaccaat tcaaaagggt aaactagaaa atccatttaa      4500
     agcaaataaa aatgtagaaa aaatagacga agaccattac aaaattacta atcgaaatag      4560
     agaaaccaaa tactacaaaa cacaatttaa gaaacaaaag ataactaatg ccgttaaact      4620
     cccacaggaa ccttctgtac aatgatgttg tttctattat tcaccacggg ccacactcaa      4680
     caaattcaaa taaccaaccc agattccgac cttggctatt tactcttctc aagcattcca      4740
     attcaaatac cggtagtgta tgaacatcac tgtctaagaa ttaatttaac ggaaatcaat      4800
     atcatcacaa attcttttgg taacaaaatc acagactcgc ccagaatgaa atacttgtac      4860
     aataaactac taaaagaatt aaatggtata actattcatc agcaaaatag gcagaaacgt      4920
     ggactatttg acataatagg ttcatccttt aaatttcttt ttggcacact tgatgaaaat      4980
     gatagaataa aaattaacaa aaaatagatc taattgcaga aaattcaatt caacttcata      5040
     aattaaatga tgttataagg tttgtgaatg aaggattaca gaaacttact aactacgaaa      5100
     ataaccgcaa tagtattgac acgcttgttt atgaactcat gcaatttatt gagtacattg      5160
     aagacataga aatgggcatg caactttccc gtctcggact ttttaaccca aagttgctca      5220
     attacgataa actagaaagc attgacagtc aaaatatact tttaattaaa acatcaactt      5280
     ggattgacca taaaaataac gaattactac ttatttcaca tatccctatt aatcacaaaa      5340
     ccattaacac cattaaaata attccttatc ccgaccgtaa tgggtatcag ttagactatt      5400
     cagaccaaca atcatatttt gaagatgaga ataaaattta taatcaagac aataaagaag      5460
     ttaataatga atgtattaaa aatataatta agcgcaagaa cccaacctgt aattttatac      5520
     caactctctc aaaagaaata attcaatacg ttgagccaaa tattatactt acatggaatc      5580
     taactgaaac tacaatcgca caaaattgtc aagaattaaa tggcgatata aaaataaatg      5640
     gaaacaaaat tattagaata aaaaaatgta gagttaaaat tggaaatgtt attttaagcg      5700
     aaaattcgtt aagtccagaa tttgatttaa caccattgta ttcaccgatt aatgtaacta      5760
     agataaaaat ggtagaacac aatgacgttt taaaactaat ttcagaaaat aacactacac      5820
     tttacgtaat tataataatt gtagttattg ttcttattat ttttcttgcc ctatcaaaat      5880
     tttttacact aaatccactc accattttat atacaaaatt tagaaaacaa gaaaaaaata      5940
     atcaagaacc acaacaagaa atagaaccgg cacgagacca gttgcctgca ttgtaccctg      6000
     aaatgccagc ccaagcatag gcaacccttt ttaaggggag ggaag                      6045
//
ID   Gypsy-4_DBi-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DBi_;
KW   Gypsy-4_DBi-I; Gypsy-4_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-441
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 828-828 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 441 BP; 150 A; 99 C; 68 G; 124 T; 0 other;
     tgacatattc acatattcag ttatgtacca aaaaataaga atatgcagcg taggcgatcc        60
     cacgctgaat caatgtaaac aatccacatc cggagcaggc gacgccgctc ttcaataaca       120
     taaacaattc ttgcaatcaa taagtgtcgc accctgagtg gcactcttac tctcaaatta       180
     ttgtatacaa tcaatatccc aaacgggcga cttcgctccc aaacttatgt acaatccata       240
     tcccaatcgc tcccaaactt ttgtaaacaa agggcagcac aagaaagatt tttgtcacaa       300
     gaaattagtc ttaagctgag ttcatttgaa taaagacgtg aaactaaata ttcgttaatt       360
     tattcttctt agcgttgtcc ttagtcaact gacgggacat tagttcgact cattaaatta       420
     ataaacaatt ttactggcgc a                                                 441
//
ID   Gypsy-4_DBp-I repbase;    DNA;    INV; 4530 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DBp_;
KW   Gypsy-4_DBp-LTR; Gypsy-4_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4530
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 659-659 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1960-2493] - Reverse transcriptase
CC   Positions [3577-4047] - Integrase core
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           586..4530
FT                 /product="Gypsy-4_DBp-I_1p"
FT                 /translation="MTELKPFLCQGMDKALWRTEWEAWLRAFNIYIDTEEI
FT                 TSVCKKRNKLLHLGGPQLQAVVYSIPGALIPFVEEEQNDVLTPLITKLNEY
FT                 FSPQRNSAFERHLFRSMTPIEGECFTEFLMRLRRQIVKCSFGETKEQIEDI
FT                 CLKDRIIDVWASFELKKKLLENEFTLEEVIKTCNIDEQVNKQTQSMIPQSN
FT                 ANSINKIVQRSASSECGRCGQKGHQENSLDCPARNAKCRKCERIGHFYRKC
FT                 RTRKRKPYDKWEGPDRKRRQRDHSIIKSISSGSKSYSDSPNDAELFRVEHG
FT                 SSREEEIPCKIGGDAVTMIIDSGSKYNLISQSDWRQLCEKRAVMFNSRAES
FT                 ANQFRAYASDHLLEVLQVFEAPISVLSDPELIATFYVIENSRQSLLGRDTA
FT                 IELKVLKLGLDVHRVEKAEPFPKWRDVSVKLSIDKSIVPVKQPMRRVPTAL
FT                 ESKVTDKFEEALNLDIIEPVLGPSAWISPVVIAFKDDGDIRVCLDMRRANK
FT                 AIQRENYPLPTFETFMTKLKGAKYFSRLDLKSAYHQLELTESSREITTFIT
FT                 HRGLFRYKRLMFGVNSAPEIFQRLMEEMLAPCQNALNYIDDVIIFGNNIEE
FT                 HDKSLAKVKEIFRANNVALNEKKCVFRVQKLKFLGHILSDKGIEVDPEKVK
FT                 VITTFRAPKNKEEVRSFLGLVTYIGKFVSDLADNTEPLRKLLKSHETFCWG
FT                 KPQEEAFQNLKAKISTVPMLSYFNLQDKTCSIADASPVALGAVLVQFDKSN
FT                 TARIISFASKSLSSVEKRYSQTEKESLALVWAVEKFYYYLAGLKFDLITDH
FT                 KPLESIFKPTSRPPARIERWLLRLQSYRFRVVYKAGKENIADSLSRLCEVT
FT                 DADPYDWAGEEHIFRVVSTSIPRSLSISKVTEMSTQDEEIIDVMTCLGQDS
FT                 WNSNMSSSYYPFRLELSIVGNILLRGTRLVIPRKLRGPVLELAHEGHPGIS
FT                 AMKRRLRSKVWWPCMDKDTEQYVKECRDCLLVSMPSNPAPMKRHPFPNGPW
FT                 RCVATDLLGPLPNGENVLVLIDYYSRYMEFKLIKSISSKTIIEEMEEIFSR
FT                 LGFPETLTTDNGRQFVSVEFKNFCESSGIRLMPTPPYWPQANGEVENMNRS
FT                 LVKRLKIAHANNDNYKKEIQKFVLMYNVTPHGTTGAPPTELMFNRVIRDKI
FT                 PGIQDLVGETVDSEERDRDVWKKEKGKELADNARKAGVIDIKVGDKVLLKN
FT                 VIFPHKLTPTFDTTTYEVTNREGNVVQISGGGKSYTRNVSHLKKIIGADSS
FT                 KSSNSVSPDVEISPSAIPLQPVAETLTPQETPASKDLPDPNENLKLRLEKK
FT                 EGV"
XX
SQ   Sequence 4530 BP; 1485 A; 892 C; 1097 G; 1056 T; 0 other;
     ctggcgacga ggagaaaaac tggagtataa atactaccgg ccaagttaaa gagaaaaaaa        60
     ctaaataaag aagtaacagg agaaaaatgg cgcgtgcctc gccggtacat atatatatgt       120
     aggaggcgca aaaaggaaaa cggtaagaaa agaaaaggtg gacagcacaa gccgattaaa       180
     ttccggcggc tgcactaaga gagtctgttc ctaagagaac gagagcaaaa taagagcgaa       240
     cgcaatatgt aattttcgca ttaagagaat ctttcttcca aatggaacga gattaagcag       300
     cgttagccga ttaaattccg gctgctgcat taaaggagtc ggttccaaag ggaatgcgat       360
     ccagagaaaa aagagcagcg ctagcggatt aaattcttgc tgttgcatta agagagccgg       420
     ttccaaaggg aatgcggaag agaaaaaaaa aataagaaga gcgaaacata atttgagatg       480
     ttcgcataaa gagtctattc aaaatggaat gagaccaata acacaaaaaa ataagggatt       540
     gctaatggcc atctaatttt aattaccttt caggttatac taaacatgac ggagttaaaa       600
     ccattcctgt gccagggaat ggataaagcg ctatggagga cagagtggga ggcgtggttg       660
     cgcgcgttta atatatatat tgacacggag gagatcacat ccgtatgtaa gaagagaaac       720
     aagcttctcc acctgggtgg accgcagctc caggctgtag tctacagcat tccgggagca       780
     ttaattcctt ttgtcgaaga ggagcaaaat gatgtcttaa cacctcttat taccaaattg       840
     aacgagtatt tttcaccgca gcgcaactcg gcttttgaga gacatttgtt tcgatcgatg       900
     accccaatag agggagaatg tttcacagag tttttgatga ggcttcgccg ccaaatagtt       960
     aaatgttcat ttggagagac caaagaacag atagaggata tctgtctaaa agataggatc      1020
     atcgatgtct gggcttcgtt cgagctaaaa aagaagctat tggaaaatga atttactttg      1080
     gaggaggtca taaaaacatg taatatcgac gaacaagtta ataaacaaac gcaatctatg      1140
     atcccgcaat cgaatgcaaa tagcatcaac aaaatagttc agcgcagcgc gagttccgaa      1200
     tgtggcagat gtggccaaaa agggcaccaa gaaaatagtt tggactgccc agccagaaac      1260
     gcgaaatgca ggaaatgcga aaggattgga catttttatc ggaaatgccg tacaaggaaa      1320
     aggaagccat acgacaaatg ggaaggacca gatagaaagc gacgacaacg tgatcattct      1380
     ataatcaagt ccatatctag tggctctaaa agttactcgg atagtccaaa cgacgcggaa      1440
     ttattcagag tggaacatgg atcatcacga gaagaagaaa ttccatgtaa aatagggggc      1500
     gatgcagtca ctatgataat tgattcgggc tcgaagtaca atctaataag tcagtcggat      1560
     tggcgacaat tgtgcgagaa aagggcagta atgtttaact cgcgcgcgga atcagccaac      1620
     cagtttcgcg catatgcttc tgatcatctg ctcgaagtgc tacaagtttt tgaagccccg      1680
     atttcggtgc taagcgatcc tgaactgatt gctacttttt acgtcattga aaatagtaga      1740
     caatcgctgt tgggacgtga cacagcaatc gaactcaagg ttctaaaact gggtttagac      1800
     gtacatcgag ttgaaaaggc cgagcctttc cccaaatggc gcgatgtgtc ggtcaagctg      1860
     tccattgata agtcaatagt cccagtgaag caaccaatga ggcgagtgcc aacagcgttg      1920
     gaaagtaaag tcaccgataa attcgaggaa gcattaaatt tggacatcat cgaaccagta      1980
     ttgggcccga gcgcttggat atcgccagtc gtgattgcgt ttaaggacga cggggatatc      2040
     cgggtatgct tggacatgag acgcgcaaac aaggcaatac aacgagaaaa ctacccgttg      2100
     ccaacgtttg aaacgtttat gactaagctg aaaggtgcca agtatttttc gcgactcgat      2160
     ttaaagagcg cttaccatca gctggagctg accgagtcca gccgagaaat tactaccttc      2220
     ataacgcacc gcgggttatt tcgatataag cggctgatgt ttggcgtgaa ttcagcccca      2280
     gaaatatttc aacggttaat ggaggaaatg ttggcccctt gtcagaatgc tttgaattac      2340
     attgatgacg tgatcatatt tggcaacaat attgaggagc atgacaaatc actcgcaaag      2400
     gtcaaggaaa tatttcgagc taataacgta gcactaaatg agaagaaatg cgtatttcga      2460
     gtacagaaat tgaaatttct aggtcatatc ctctcggaca aggggatcga agttgacccc      2520
     gagaaagtga aggtgattac aacgtttaga gcgcccaaaa ataaagaaga ggtacgcagt      2580
     ttcctcggtt tagtcacata cattgggaaa tttgtatctg atctggcgga taatacagag      2640
     cctttgagga aattactgaa aagccatgaa acgttctgtt ggggcaagcc acaggaagaa      2700
     gcattccaaa atctcaaagc taagatttcc acagttccaa tgctgtcata ttttaacctg      2760
     caggataaaa cgtgttcgat cgcagatgcc agcccagtgg ccttgggagc agtgttagtg      2820
     caatttgata aatcgaatac tgcacgcata atatcgtttg ctagtaagag tttgtcgtcg      2880
     gtggaaaaaa gatattcaca aacagaaaaa gaaagcctgg cattggtgtg ggcggtggaa      2940
     aaattttatt attatttagc gggattaaag tttgatctga taactgacca caagccactt      3000
     gaatcaatct ttaaaccaac ttcgcgaccc ccggccagga ttgaaaggtg gttgctgcga      3060
     ttacaatctt accgattccg tgtggtatat aaggcaggaa aggagaatat tgccgactca      3120
     ctatcaagac tttgcgaagt aaccgatgca gacccttatg actgggctgg tgaggaacac      3180
     atatttcgcg tggtgtcaac ctcaattcct agatcgctct ccatatcgaa ggtcacagag      3240
     atgagcaccc aggatgagga aataatagac gtgatgacat gccttggtca ggattcatgg      3300
     aactcaaata tgtctagctc gtactatcca tttcgtttag aactctcgat tgtgggaaat      3360
     attctattgc ggggcacaag actagtaatt ccgcggaagt tacgtggacc agtacttgaa      3420
     ctcgctcatg aagggcatcc cgggataagc gctatgaaac ggaggcttcg ttccaaagtt      3480
     tggtggccgt gtatggacaa ggacacagaa cagtatgtta aggagtgccg cgattgcctg      3540
     ttagtatcaa tgccatcaaa tccggccccc atgaaaagac atccgtttcc gaatggaccc      3600
     tggagatgcg tagcgaccga tcttttgggc cctttaccaa atggtgagaa tgtactcgta      3660
     ttaatagact attactcgcg gtatatggaa ttcaaactca tcaagtcgat atcatcgaaa      3720
     accattattg aggaaatgga agagatcttt tccagattgg gattcccgga aacattaaca      3780
     actgataatg ggaggcaatt tgtcagcgtc gaatttaaaa atttttgtga aagcagcggc      3840
     attcggctaa tgccaactcc cccatactgg ccccaggcca acggcgaagt agaaaacatg      3900
     aacagatctc tggtgaaacg cctaaagata gctcatgcca ataacgacaa ttacaaaaaa      3960
     gaaattcaaa aatttgtatt aatgtataac gtcactccac acgggaccac gggcgcacca      4020
     ccaacagagc taatgtttaa cagagtgata agggacaaaa ttcctggcat acaggacctc      4080
     gtgggcgaaa cggttgattc agaagagaga gacagggacg tctggaagaa agagaaaggg      4140
     aaagagttag ccgacaacgc taggaaagcg ggagtgatcg atataaaagt aggtgacaaa      4200
     gttctcctaa aaaacgtaat attcccgcat aagctgacgc caacattcga tacgaccaca      4260
     tatgaagtaa ctaaccgaga gggaaatgtt gttcaaattt ctggtggtgg taagtcgtat      4320
     actaggaatg taagccactt gaaaaagatc atcggcgcag actcatcgaa atcgtctaac      4380
     tcggtgagcc ccgatgttga gatatctccc tcagctattc ctttacagcc ggttgccgaa      4440
     actctgacgc cacaggaaac tccggcatca aaggacctcc ctgacccgaa cgagaacctg      4500
     aagctccgtc tggagaaaaa agaaggggtg                                       4530
//
ID   Gypsy-4_DBp-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.05, Created)
DT   12-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DBp_;
KW   Gypsy-4_DBp-I; Gypsy-4_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 660-660 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 205 BP; 65 A; 35 C; 59 G; 46 T; 0 other;
     tggagatccg tatcggcagc gaagagcgac ggcagagatg ggattgacgc gctctctcaa        60
     aagaagtaag aagaagaaaa gaattaatgt tcaccattcg atcggaggca gttgactggt       120
     aacgcccgct gtgccgggac taataaaagg agctgaaata ccgaattgaa actgttgttt       180
     aaattgggga tttggagtct ttaca                                             205
//
ID   Gypsy-4_DEl-I repbase;    DNA;    INV; 4663 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DEl_;
KW   Gypsy-4_DEl-LTR; Gypsy-4_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4663
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 516-516 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2009-2515] - Reverse transcriptase
CC   Positions [3575-4054] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..1658
FT                 /product="Gypsy-4_DEl-I_2p"
FT                 /translation="MQPTTTTKNKREMAFANAANNNNEEQSEEEDEDVFGN
FT                 ELKLVETVDRGGVQLPGTGVQPSTSTFGVQRSPASNILAESGGNAAGMEQA
FT                 MQNLRFENVDRLSKPEMNLNTVKELLPEFNGDGNINEWLLVVKNVRDVFKV
FT                 SDDVMRPLICSRLKGKANFWLLSRPSLLSGSIDLILAQLKIIFGTKDNVLE
FT                 MRRKFENRQWQFGEKFANYYFDKLTLAEDIAMSVHELVQYLIDGIQNVQLK
FT                 NQAKLLRFAVPADVLEAFQDVEKPRAPVHQNRMQGKSSSNAATPEQRVIKC
FT                 FNCHSLGHLAKECRKPVRADGACYACGEVGHLARECLLYKKKETGNEYVRH
FT                 FRVQFKNTIHNSNKLYSVECLIDFLNLSNFKLVQIVNDANQLSVKPVGIHL
FT                 VEKCESDFKQSRFQCRETGRCRDKSKEQSWKQLQSRFQCRETGRCREKSRE
FT                 IEQARGSEMFRNYIEY"
FT   CDS           2093..4645
FT                 /product="Gypsy-4_DEl-I_1p"
FT                 /translation="MCVDYRRLNKVTLKDNYPIPLIDDLLERLANKKFFSK
FT                 LDLKNGFHHVFMDDNSVKYTSFTTPLGQFEFLRMPFGLTNAPPTFQRFINK
FT                 IFADMVRPGKVVIYLDDIMIATESLYEHFEILKEVLKRIVENKLKLRLDKC
FT                 EFLQSSIDYLGYTVNGDGIKANETGLEAIRSFPVPSKVSEVSSFIGLCSYF
FT                 RRFIKDFSIIAKPLYDLTRKDKKFAFNKEELDAFTILKEKLIEAPILAIYD
FT                 PRDETELHCDASSLGYGAILLQRKRDNKFHPVFYFSKRTTDVESRYHSFEL
FT                 ETLAIINALKRFRVYVQGIRFKIVTDCNSLTLTLNKKEINPRISRWALELQ
FT                 NYDYELEHRSGKRMQHVDALSRSNSILVIETNTFEENLIICQGRDENINRV
FT                 KEMLLNQEDEHYELRNGVVYKKSNDRLLFCVPQSMEENVLYKYHDEMGHVG
FT                 IDKVTDLISKSYWFPGIRKKVEIHIKNCLKCIAFSNKTGKTEGFLHPIPKG
FT                 TSPFEVIHIDHYGPINSKETNKKHILVIIDACTKFTRLYPTKTTSSKEAIE
FT                 ALQNYFRSYSRPKNIISDRGSCFTSKEFEEFVEQNNVRHVKIATASPQANG
FT                 QVERVNRDLGPMIAKLTDVENNQPWHKVLDKVEFTMNNTKNRSLNQYPSVM
FT                 LFGVRQRGCYIDSLKENFIDESQEILHKDLNEIRLQANICQKKAQGYNKNY
FT                 VDSKRQKPQLFSEGDYVVVRNFNSQQGVSSKLIPKFKGPYVVSKVLDNDRY
FT                 FIEDVENFQQSQVPYSGIWAVHNMKPWLNGKDKVDVNDSPDIKDKEIDPAD
FT                 EISNTNKIIVNKNKNNSKNIEVNDNCKINKYGQSSIVTRSKSTSIGRSS"
XX
SQ   Sequence 4663 BP; 1689 A; 751 C; 992 G; 1231 T; 0 other;
     ctataattca gaagtggtaa ctgaacctaa ccaagttata ttggaatagg aaaatatctg        60
     ttaacatggc ttcacgcatt aatctcggcg aactcaaatt aatggaaatc aaaagtttct       120
     gtgaaaaact tggcttgtcc acaaagggaa caaagccgca ctaattgcgc agttaagtgc       180
     tgtactaccg tctgaaattg ctccggagtt gtactacgaa aaggtggagt ctacgaaagg       240
     tggaggcgaa attggtgttg agatggctgt cgccaatgca gccaacaaca acaacgaaga       300
     acaagcggga gatggctttc gccaatgcag ccaacaacaa caacgaagaa caaagcgagg       360
     aagaagatga agacgttttc ggcaacgaac ttaaacttgt cgagacagtt gatcgtggtg       420
     gcgttcaact tccaggaacc ggcgttcaac cgagtacttc aacctttggc gttcaacgta       480
     gtccagctag caacatactg gccgaatcgg gtggcaacgc tgcgggaatg gaacaggcga       540
     tgcaaaattt acgtttcgaa aatgtggacc gtctttccaa gccagaaatg aacttgaaca       600
     ccgtgaaaga gctactccca gaattcaacg gcgatggcaa cataaacgaa tggttgctgg       660
     tggtaaaaaa tgttcgtgat gtgttcaaag tcagtgatga cgtcatgcgt ccattaattt       720
     gctcacgctt aaagggcaag gctaattttt ggctgttatc tcgcccatca ctgttgtctg       780
     ggagtatcga cttgattctg gcacaactaa aaattatttt tggaaccaag gataacgtcc       840
     tggaaatgcg acgcaagttt gaaaaccgcc agtggcaatt cggtgagaag tttgccaact       900
     actactttga caaacttact ctggcagaag acatcgctat gagtgttcac gaactagtgc       960
     agtacttgat agatggcata caaaatgtac aacttaaaaa ccaagcgaaa ctactacgtt      1020
     ttgcagtgcc tgctgatgta ttggaagcct ttcaagatgt agagaaaccc agagctccgg      1080
     tacatcaaaa taggatgcaa ggaaagtctt catcaaacgc tgcgaccccg gaacagaggg      1140
     tcatcaaatg ctttaactgc cacagtcttg gccatctggc taaggaatgc cgcaagccag      1200
     tacgggccga tggagcttgc tatgcctgtg gagaagttgg acacttggct agagagtgtt      1260
     tattgtacaa gaagaaagaa actggcaacg aatatgtaag acattttaga gttcaattta      1320
     aaaatacgat acataattca aataaattgt attccgtaga gtgcctcata gattttttaa      1380
     atctaagtaa ttttaagctc gtacaaatag ttaacgatgc taaccaatta tctgttaagc      1440
     cagtgggtat acatttagtg gaaaagtgcg aaagtgattt caaacaaagt agatttcaat      1500
     gtagagaaac aggtagatgt agagacaaaa gtaaagagca atcttggaaa caattacaaa      1560
     gtagatttca atgtagagaa acaggtagat gtagagaaaa gagtagagaa atcgaacaag      1620
     cccgaggtag cgaaatgttt agaaattata tcgaatatta atgttgaggc cgatgaagct      1680
     atagatgacg aagctgacac cagacagaca atatcgttgc gaatgaagaa agttacaatg      1740
     tggattcatt cgatagagac atgcttaata taaatgttat ttgcgatggc aaagcaactt      1800
     atacgatagg aaaggaggtg agtcaagaaa ctagaaataa gtttaaatgt ttgtttaaaa      1860
     ctttttatga agacgctgat cgtccgatgg aacctaaaat aaagtgtact atgaagatca      1920
     caattgaaag tgataaccat ttcggtgtcc ccctcgaaga ttgtcttacg cagaaaagtc      1980
     cgaagttcaa aaaatattag acgagaattt agccagtggg tatatacggc caagtgaatc      2040
     tgaatatgtg tcgccaattg ttctcgtaaa gaaaaagaca ggagaactta gaatgtgtgt      2100
     cgattatcgt cgccttaata aggttactct taaagataat tacccgattc cgttaattga      2160
     cgacttgttg gaaaggttag cgaataaaaa attcttttcg aaacttgatt tgaaaaacgg      2220
     atttcatcat gtgttcatgg atgataattc tgttaagtat acgtctttta ccaccccact      2280
     agggcagttt gaatttctaa gaatgccgtt tggcttgacg aatgcaccac caacattcca      2340
     aagatttatt aacaagatat ttgccgatat ggtacgaccg ggaaaagttg tgatctatct      2400
     tgatgacatt atgatagcga cggagagttt gtatgagcat ttcgaaattt taaaagaagt      2460
     tttgaaacgt atagttgaaa acaaattaaa acttagactt gataaatgtg aattcttgca      2520
     atcatccatt gattacttgg gatatacagt caatggagat gggataaaag cgaacgaaac      2580
     gggtttagaa gcaattaggt cttttccagt gccctcaaaa gtcagcgagg tctcaagctt      2640
     tataggatta tgctcttatt tcagaagatt tattaaagat ttttctatta ttgcaaagcc      2700
     actttacgat ttaaccagaa aagacaagaa gtttgctttt aataaagaag aactagatgc      2760
     gttcactata cttaaggaaa agttaattga agctccaatt ttagcaatat atgatccaag      2820
     agatgagaca gagttgcact gtgatgcaag ctcattaggt tatggcgcaa tattattaca      2880
     aaggaaaagg gataacaaat ttcaccctgt cttttatttt tcgaaacgta caaccgatgt      2940
     ggagtcaagg taccacagct tcgagttgga aactttagca ataataaacg cattaaaaag      3000
     atttcgagtt tatgtgcaag gaattagatt caaaattgtg actgattgca attcgttaac      3060
     tttaacttta aataaaaaag aaataaatcc ccgtatatca agatgggctt tagagcttca      3120
     aaactatgac tacgagcttg agcacagatc gggaaaaaga atgcaacatg tggacgcact      3180
     gagtcgaagt aatagtattc ttgtaattga aacaaatact ttcgaagaaa atctaattat      3240
     atgtcaagga agagatgaaa atataaatag agttaaagaa atgttattaa atcaagagga      3300
     tgagcactat gaactacgaa atggtgtcgt gtataagaaa agtaacgata ggctactgtt      3360
     ttgtgttcca cagtcaatgg aagaaaatgt tctgtacaaa taccatgacg aaatggggca      3420
     tgtaggaatt gacaaagtaa cggacctcat aagtaagagt tattggtttc caggtataag      3480
     aaagaaagtt gagattcaca taaagaactg cctaaagtgt atagcatttt ctaataaaac      3540
     aggtaaaact gagggttttt tacatcctat tccgaaaggt acaagtccgt ttgaagtcat      3600
     tcatattgat cactatggtc cgataaatag caaggaaacg aataaaaagc acatactagt      3660
     aataattgac gcatgtacaa aattcaccag attatatcca accaaaacaa ctagttccaa      3720
     ggaagcaata gaagcgttac aaaactattt cagatcgtac agtagaccta aaaacataat      3780
     atctgatcga ggcagctgtt ttacgtcaaa ggaatttgag gagtttgttg aacaaaacaa      3840
     tgtaaggcat gttaaaatag caacagcttc gccacaagct aacgggcaag tagaaagagt      3900
     caatagagat ttaggtccaa tgatagcaaa gttaacagac gtagagaata atcaaccatg      3960
     gcacaaagtt ttagacaaag tagagtttac aatgaataac acaaaaaacc gaagtttgaa      4020
     tcaataccca agtgtaatgt tgtttggggt tagacagagg ggttgttata ttgatagttt      4080
     aaaagaaaat tttatcgatg aaagtcaaga aattttgcac aaagacctaa acgaaatacg      4140
     actacaagct aatatatgcc agaaaaaagc gcaaggatat aacaaaaact atgttgattc      4200
     aaaacgacaa aaaccgcaac tattttctga aggagattat gttgttgttc gaaattttaa      4260
     ctcgcagcaa ggcgtgtcca gtaagttaat tcccaaattc aaagggcctt atgttgtgtc      4320
     caaggtgtta gataatgata ggtactttat tgaagacgta gagaactttc agcagtcaca      4380
     agtgccatat tcgggtatat gggcggtgca taatatgaaa ccctggctta atggaaaaga      4440
     caaagttgat gttaatgata gtccagatat aaaagataag gaaattgatc ctgctgatga      4500
     aattagcaat acaaataaaa ttattgtaaa taaaaacaaa aataatagta aaaacataga      4560
     agtaaacgac aattgtaaaa taaataaata tggccaaagt agcattgtta ctagaagtaa      4620
     gtcaacgagt atcgggagat cctcatagtc aggacggccg aat                        4663
//
ID   Gypsy-4_DEl-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DEl_;
KW   Gypsy-4_DEl-LTR; Gypsy-4_DEl-I.
XX
NM   Gypsy-4_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-274
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 517-517 (2012).
XX
DR   [1] (Consensus)
XX
CC   TG-TA termini.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 274 BP; 105 A; 37 C; 56 G; 76 T; 0 other;
     tgtagtaata agaactaagt aagcaactac tcttaataaa catggccaaa gtagttttaa        60
     gttatatagt taagttatat tttaatgtgt gtgtaaccct ggatatattt tgtgtgtgct       120
     atccctggtt tgtaaaagta tcgatgtgtt ttgcatccct aaaaaaagac gcacgaagaa       180
     gagagcgagg cattcgaaaa agcgtggccg gtgcgatcaa acgaaaaagc tgaataaaag       240
     ataattaaat taaagcagaa caaagaacac tata                                   274
//
ID   Gypsy-4_Deu-I repbase;    DNA;    INV; 6183 BP.
XX
AC   AFPQ01004447;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_Deu_;
KW   Gypsy-4_Deu-LTR; Gypsy-4_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6183
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004447; Positions     488    6670.
XX
CC   Positions [2263-2724] - Reverse transcriptase
CC   Positions [3929-4402] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           579..1520
FT                 /product="Gypsy-4_Deu-I_3p"
FT                 /translation="MTSPQLLSEIHLNQLLSQLKELHYFDGTPGRLAEFIN
FT                 QVEYLLQLYPTQDARQAHVIFGAIRRLVVDSAQETVAQAGANNWPSMKEAL
FT                 SISFKDHRPYETLIQHLGNTEYRGSTSKFIETLENRCRNIYDKLELETDPI
FT                 DKINYRKMLEKTICNTINKKLPDRIYMTLARKDITTIPKLKQATMELGLYD
FT                 LNPEEKFSQNKKNYKNKGYKNQGNNQRYYNQKSSNSFYPSNSQNSQNQSRS
FT                 SPIDQTWNYHTLKNDLNQGRQQNPLNFQPSTSHKSKTAPNAPVKRQRQSQS
FT                 EQSRMDVNFHQTASETEPSIHM"
FT   CDS           2873..4639
FT                 /product="Gypsy-4_Deu-I_2p"
FT                 /translation="MTLRLKKGAIIDTKCRDYIESFEKLKVLITSDPILIY
FT                 PDFSKPFSLTTDASNIAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELL
FT                 AIVWATKYFRSYLFGRPFEILSDHKPLVWLNNIKEPNMKLQRWKIKLNEFD
FT                 YKIKYLPGKGNYVADALSRTIIIEVMIGEIADSMNATIHSAAEDNLNYISI
FT                 TERPLNYFSRQIEIEKGDEDSVNTSHYFQKLKIKIIYKEMTEESAKDIIKE
FT                 YLCTKNSAIYFPNDEDFITFQKAYIEIIHPNHITKLVRCMSKLEDIQTYAE
FT                 LKELILKYHKEFLHPGIEKTSNWLKEKYYYPDSMKLIQNMINECEICNIAK
FT                 TEHRNTKMSFETTPEINNARERYVLDFYMVSNQQFLSCIDIYSKFATLIEV
FT                 KGRDWLEAKRAIMRIFNDMGKPQEIKADKDSAFMCVALQNWLKSEGVKISI
FT                 TTSKNGISDVERLHKTINEKLRIISNDENIENKCTKFETILYTYNHKTKHS
FT                 TTKRTPADIFIYAGTPDFNTQQNKIRKINKLNEERNDYEIGTKYRQSPLVK
FT                 AKITNPFRKTGEIKQIDDKHYEETNRGRKSYIISQNTKRKEI"
XX
SQ   Sequence 6183 BP; 2644 A; 1034 C; 921 G; 1584 T; 0 other;
     ttggcgcagt cggtaggatc tcaaaaagtt aaaatcggta ctagtcactt aaggctacta        60
     ttacaaatag tatccttgac tagcgtagtg caaacttgag atccgcaaaa gaatcgcgag       120
     cctttatcgc aaaagaaccg tgacgggaac gtagtcacag acattcacta aaaagtttta       180
     aaatataaaa gaattttaat caattttaag aagtgaaaaa acctaagaac cgtgacagga       240
     acgtagtcac agaccctcac taaaaatttt aaaatatttt aatcaatttt aaaaagtgaa       300
     aaacctaaga accgtgacaa gaacgtagtc acagaccctc acaaaaattc taaaacacca       360
     aggaattttt attcattaca taagtgaaat acccaacaaa gacattccaa aatctcacaa       420
     gtgaaataac gaaaattata acaagtgaat acaattttac aaagcaattc aacaacagta       480
     aaataaattc taccaaaaac caaataccat ctttgtaaaa taaaaacatt taaagaaaaa       540
     ttaaagactt tgtgaaaaaa taaaaatcaa cataaaagat gacttcacca caactattgt       600
     cagagattca tctgaatcag ttgctaagtc agctgaaaga actacactat ttcgatggaa       660
     ctcccggcag attagccgag ttcatcaacc aagtggaata tttattacaa ctctacccaa       720
     cacaagatgc gagacaagcc cacgtcatat tcggagcaat cagacgactg gtagtagact       780
     cagcacagga aacagtggca caagcaggag caaacaactg gccatccatg aaggaagctt       840
     tatccatatc gtttaaggat caccgccctt atgaaactct aattcaacat cttggaaaca       900
     ccgaataccg cggaagtacc agtaagttca tagaaacatt ggaaaataga tgccgtaata       960
     tttatgataa gttagaatta gaaactgatc caattgataa aataaactat cgcaaaatgc      1020
     tcgaaaaaac catttgtaat accatcaata aaaaacttcc tgatagaatc tacatgacac      1080
     tagctagaaa agatataaca actatcccta aattaaaaca agccactatg gagttaggat      1140
     tatatgattt gaaccctgaa gagaaatttt cccaaaataa gaaaaattat aaaaataaag      1200
     gatataaaaa tcaggggaat aatcagagat attataatca gaaaagttcc aattcgtttt      1260
     acccttcgaa ctctcagaat tcacaaaatc agagtagatc aagtccgata gatcaaactt      1320
     ggaattatca tactctcaag aatgatctaa atcagggaag acagcaaaat cccttaaatt      1380
     ttcaaccttc aacttctcat aaatcaaaaa ctgctccaaa tgccccagtt aaaagacaaa      1440
     ggcaaagtca aagtgagcaa agccgaatgg atgtaaattt tcatcaaaca gcctcggaaa      1500
     cagaaccaag catccatatg taaaattaca atttaaaaat aaattttaca aaggaatgat      1560
     agacacaggt tcgtctatca acattatgaa tactaatttt ggcaaattaa aagaaaaaaa      1620
     gaaaacttga tagtacatac tattagagga caggttgaat taaataaaag tgttatagta      1680
     gaaccatcta tagtatgttc atctgaacag aaattttatt tacacaaatt ttcagatcaa      1740
     tatgatattt tgttaggtag accatactta aaggcagcta aagccataat aaactacgag      1800
     aatgaaacaa ttacactcgg ttcaaaactt tataaattca tacacgaaga cattgataag      1860
     gagaagaccg cattaaaatg ccttactccg ccttccacgg aagatcaatc tgtcaatttt      1920
     gctattgaga atgaattaag agagtgtaat gaatttagat tagaacactt aaacagtgaa      1980
     gagatcgaaa gtttgaaaaa aatcctatac gaatatagag atattcagta cagggaaggc      2040
     gaaaatttga ccttcaccag tacaataaaa cattcgattc aaacacaaca tgaggatccg      2100
     gtttatcgca aaccatataa ataccctcaa agtgttgatg aagaggttaa taaacagata      2160
     aaagagatga tagaacaggg aataattcgt aaatcgaaat ctccttactg ttcacccatc      2220
     tgggttgtcc caaagaaatc tgatgcctct ggcaagaaaa aatttcgact agttgttgat      2280
     tatcgaaatc tgaacgagat aacgatcaat gacaagttcc ccattcctag aatggatgaa      2340
     atactagaca aacttggtag atgccaatat ttcactacca tagatttagc taagggtttc      2400
     caccagattc agatggaaga aaactctatt gcaaaaactg cgttttcaac caaacatggg      2460
     cattacgaat acactcgcat gccctttggc cttaaaaatg caccagctac attccaaagg      2520
     tgcatgaaca atctattgga agatttaatc ttcaaagatt gtttagttta cttggatgat      2580
     attataatat actccacttc attggaggaa catattttat cactaaataa agtattcaga      2640
     aagttaagga acgcaaattt aagattgcaa ctagacaaat gcgagtttat gaaaaaggaa      2700
     acagaattcc tgggacacat tgttaccact aatggaattc gacctaatcc aagaaaaact      2760
     gatgcaataa tcaatttccc attgccaaaa actctaaaca ataaaatcat ttttaggatt      2820
     atgtggtttc tacaggaaat ttattcctaa tttcgctaaa gtagctaaac ccatgaccct      2880
     tagattaaag aaaggagcaa taatcgatac taaatgtaga gattacatag aatcatttga      2940
     aaagttaaag gtattgataa catcagaccc gatattgatc tatcctgatt tttcaaaacc      3000
     cttttcatta accacagatg ctagtaatat agcaataggt gcggttttat cacaaaatca      3060
     taaaccagtc tgctatgcta gtagaacgtt aaacgaacac gaaataaatt atgccacaat      3120
     agaaaaggaa cttctagcaa tcgtttgggc aacaaaatat tttagatctt atctattcgg      3180
     aagacctttc gaaatactta gtgatcataa accccttgtt tggctaaata atattaaaga      3240
     accaaacatg aaattacaac gttggaaaat caaattgaat gaatttgatt acaaaattaa      3300
     gtatcttcca ggcaaaggaa attatgtagc agatgctctt tcccgcacaa taataataga      3360
     agttatgatt ggagaaattg cagacagtat gaatgcaacc atacatagcg cggccgaaga      3420
     taatttgaat tatatttcaa tcactgaaag acccttaaac tatttttcta gacaaataga      3480
     aatagaaaaa ggagatgaag actcagttaa cacgagtcat tactttcaga aactaaaaat      3540
     taaaatcata tacaaagaaa tgaccgaaga aagtgcaaaa gatataatca aggaatacct      3600
     atgtactaag aacagtgcaa tttatttccc taacgatgaa gatttcatta catttcaaaa      3660
     agcatatata gaaattatac atccgaatca cataacgaaa ctagtgagat gtatgtccaa      3720
     actggaagat atccagacat atgcagaatt aaaggaacta attttaaaat atcataaaga      3780
     attcctacac ccgggtatag aaaaaacctc gaattggtta aaagaaaaat actactaccc      3840
     agatagcatg aagcttattc aaaatatgat caacgaatgc gaaatttgta atatagcaaa      3900
     gacagaacac aggaatacaa aaatgtcatt cgagacaaca ccagaaatta ataacgcaag      3960
     agaacgttac gttctggatt tttacatggt cagtaatcaa caatttttgt catgcattga      4020
     tatatattcc aaatttgcca cactaatcga agtaaaagga cgagactggc tggaagcgaa      4080
     gagagccatc atgagaatat tcaatgatat gggtaaaccc caagagataa aagcagacaa      4140
     agactcagca tttatgtgcg tagccctaca aaactggtta aaatcagaag gagtaaaaat      4200
     ttcaattacg acaagtaaga atggaatatc agatgtagaa agattacaca aaacgataaa      4260
     cgagaaatta cggattataa gtaatgacga aaacattgaa aacaaatgca ctaaatttga      4320
     aacaatcctg tatacataca accataaaac aaagcatagt accactaaga ggacaccagc      4380
     agatatattc atatacgcag gtacacctga ttttaacact caacaaaaca aaatccgaaa      4440
     gattaacaaa ctaaacgaag aaagaaatga ttacgaaatt ggcactaaat atagacaatc      4500
     ccctcttgtt aaagccaaaa tcactaaccc atttagaaag actggtgaaa ttaaacaaat      4560
     agacgataaa cattacgaag aaactaacag aggaaggaaa tcatacatta taagtcaaaa      4620
     tacaaaaaga aaagaaattt aataaaagca aatacgataa ttccagaaga tctgaagaag      4680
     aagaagaaga ccaacctact acacgtaatc atcttagtaa tccagttagc agcaataact      4740
     aacggacaaa gtatggagat aaacccgatc gaagcgaaaa atggatactt tatatttaaa      4800
     acaggagtaa taacaattcc aacagatttc gaatatcact atctaagtat aaacttaaca      4860
     aaaacccaaa gaacttatga aaacttacta aaagaagcca aaacctttga aaacattctc      4920
     caaattaaat acttagttga aaaattaaat agagaaataa atggaattaa aattgtaaga      4980
     cgaagcagaa gaggtttaat taacgcagta ggctcaactt ataaatattt atttggaaca      5040
     ttagatcagg aagacagagc ggaattagaa gataaaatta aaacactatc agaaaattct      5100
     cttcaaagta gtgatttaaa tatggtaatc gatgtcatta acagcggcat gaatatcata      5160
     aataacttca aagaacaaaa agaagaagaa aaccaagtag ccgtattaat tttcaatctc      5220
     caacaattca cagaatatgt tgaagatata gaattaggaa tgcaattaac ccgcttaggt      5280
     atatttaatc ccaaactatt aaaacacgat tatttagatc acgtgaattc agagaaaata      5340
     cttaaggtaa aaacttcaac atggctaaaa tcagatacga acgaaattct gattatttct      5400
     caaattccta ataaattaat tgaagcacca atttttaaaa taatccctta ccctgataaa      5460
     ctatgaaaca tattaacaga agacatatct aaagaatttt acattcacga tgaaaaagtt      5520
     tttgtgaagg aaacaagatt agaaacattt gacaaatgta ttattggaat aataaaacaa      5580
     gaagaaacaa aatgtaaata cacgaaaact cacaaaaacc aacaaattaa ttatgtagaa      5640
     ccaaacatat tgttaacatg gaatttagaa aaaaccttta taaaccaaaa ttgtataaac      5700
     aatcaaattt ctatctatgg aaacaatatg attgaaatca aaaattgtac catccaattg      5760
     gatgaattca taatatcaaa ttctatagct gattatacac aaaatgtcta cgtaagcaat      5820
     aatattacta aaatagaacc aatatcacat atacaaacaa aagaaataat aaattcccaa      5880
     ataaaatatt acaatacatt tcaaattatt tgtatcacga catttgtaat cgtaataata      5940
     agcatcatat tatatgtaat atttaaattt aagaatatac caaaacaact tatcataaaa      6000
     tatgtaaaga aagatgaaaa agataaaaca tgcgaggaag taattccaca gataagctca      6060
     gaagaaaaca ttacattata tccaaatatc aacgtctgag gacagacttt aatcaaagtg      6120
     tgggggagtg acatatctac aataacctcg tcacctccac ttaatcataa gtaagatatt      6180
     cta                                                                    6183
//
ID   Gypsy-4_Deu-LTR repbase;    DNA;    INV; 469 BP.
XX
AC   AFPQ01004447;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_Deu_;
KW   Gypsy-4_Deu-I; Gypsy-4_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-469
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004447; Positions      19     487.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 469 BP; 196 A; 82 C; 64 G; 127 T; 0 other;
     tgtaacttaa tcgaatatgg aaaattacca aaccctttta tctaaacaca gacacggaag        60
     tttaccaaac cttttatata aacacagaca gatcgcagac agaaattctt tcccacactg       120
     cgactgaaaa acaaagagtc ttattactca gactcttaat ctaaacatta ataacaaaat       180
     tttccataga cgatcaaggc taaagtaggg gtcctgttac ggacatttga aaagagaaat       240
     cttgtatcca agagtaccaa acttgaatac aagagaataa agcttaataa taagaaagtt       300
     ctctcagaga acacaataat ttgaaaagcc caaaaaccaa ggcttcatta taatttaaga       360
     cttaagaaaa agtcagttca cttaagacac tcaatgtttg aagttagaaa tagcaaattc       420
     ggttaaataa aattatattt ttttaacata cgaatggtca aacatttca                   469
//
ID   Gypsy-4_DFi-I repbase;    DNA;    INV; 5317 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DFi_;
KW   Gypsy-4_DFi-LTR; Gypsy-4_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5317
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 895-895 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2886-3428] - Reverse transcriptase
CC   Positions [4443-4919] - Integrase core
CC   'TATATA' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2256..4373,4377..5309)
FT                 /product="Gypsy-4_DFi-I_1p"
FT                 /translation="MRIHPGILKPNIKELVGIGGKKIYTLGSFMIATKLDD
FT                 VAIDMCFHVVRDKDTLYEGVIGSDVLDNVNATIGAKGVFFHKVSSANVHDR
FT                 TVVEDRVINNSSRNNEINITHQSDYQNVAEEASTIPDLTETFHQLMTADFY
FT                 EEIVPDLDLIHLCHDLKSEVVELIKTYQPRKPESSPVEMKILLTDEIPVYQ
FT                 RPRRLPFEDNEKVVKQIKDWLKEGIIRQSVSEYASPIVLVAKKDGTKRLCC
FT                 DYRKLNQKIIRDNFPMALIDDVLQKLQKGKVFTTLDLSNGFFHVPVHESSR
FT                 KYTSFVTQSGQYEFCFVPFGISNSPAVFMRYIFAVLRPLIEDGTLILYMDD
FT                 LIIPSEDEREGLEKFKKVLSVAQESGLRIKWEKCQILQKRVQFLGYIVENA
FT                 TIQPSAEKTWAVENFPVPRDKKGVQRYLGLTSYFRRFVKDFAIIARPLSNL
FT                 LKKNAFFKIGEEELASFNQLKLFLSRSPVLKLFDQKSATEVHCDASMYGYG
FT                 AVLLQKDSVDQEYHPVEYMSRKTTETEEKYPSYELEVLAIVQALRKWRIYL
FT                 LGKKVKIITDCNAFAMTMRKNDVPVKVARWAMFLQDFDYIIEHRPGTRMKH
FT                 VDALSRVHCLLTQDSVRHRIQQAQLQDEWIKAVVKVLETNTYDDFYLKHEI
FT                 LHKDPIKELIVIPSAMEVEIIRTAHRQGHFGVKKTIDLVQRDYYVPELDRK
FT                 AQAIVKCVECIVGEAKYGKKEGYLNTINKSDEPLQTYHIDHVGPMDLTKKQ
FT                 YNHILVVVDAFSKFVWLYPTKSTGADEVVDRLQRQSEVFGNPSRLITDRGT
FT                 AFTANVFEEYCKDNNIQHLLVATGVPRGNGQVERINRIVITLLTKLCAEDP
FT                 KAWYKHVGRVQQFINSSPPRSTKLSPFKILTGMNMKTKYDTDLGNLLEEDY
FT                 LSELQEAKENIRREAKENISKIQDENRKAYNKSRKPETDYKIGDLVAIKRT
FT                 QFGAGLKLKKKFLGPYAVTRKLRHGRYLVEKVGDDEGPIKTNTVAEYMKLW
FT                 SPSFGTNELSE"
XX
SQ   Sequence 5317 BP; 1836 A; 964 C; 1233 G; 1281 T; 3 other;
     aatttggggg ctcgtccagg atgaatctac gtggaaagtt aacgtgatat gcggccaaca        60
     aaaaccatta agttttgtgc taaaaatcca tcgttgacgc agtaaaatga gaaaaaccaa       120
     aggaaaaagc aagaagttat gaagagaagt gttttaatgc agcagcagag taaaagaaga       180
     aaaagagaat tttcatattt cgcaaccgcc atcaagcttt gcgaaatatt gtgaaattct       240
     ggaggcgtcg cgtcacttac caaccacaaa gcagagagaa gcagagaaaa gccgagaaaa       300
     gtcgtgagaa gaggaacgag gatcagaaac tgagcagaag gaggaaaatt aagaggaaac       360
     aagaattctc gtgtttcgca attccatcaa gcattgcgaa atactgggaa gttctgcgcg       420
     ctggaaacga agagaggaac gaggatcaga agcagagaga aggagaaaaa tctgagcaga       480
     aagaggaaag gagaattttc gtgtttcgca attccatcaa gcattgcgaa atattgcgaa       540
     aattctgcgc actagcaacg aagaagagag aagaggaacg aggatcagaa gcagagagaa       600
     ggataaaaag ctaagaagaa aaaagaattt tcatattttg caaccgccat caagtagtgc       660
     gaaatattgc gaaattctgg agctacgcac gcaaagaagt ttaaacggag gcgagatacg       720
     aaagcggtga cgtcattaat ccgtcttcgc taagggcgac aaaaattggc tacagtgaca       780
     gcttgaggag gtgaaagcga acgtggagga gctgaagaag atcagaagag gaagtcgacc       840
     agagagacga agcgacgaag ttcaagaaga ggtgtcctac gagagcagcg acgtcatcaa       900
     catcgaggca agaggtggca agcagttcaa caggaggcgc gcaacggctg cgagacaaat       960
     cgcaacgaca acccaagcag tcaaggcatc caggggtgca tcaacaaaga cgaccggaaa      1020
     gaagcagtgc gcaagtataa actctttgac gacttgtgac atttatttga atttctatat      1080
     aacttacttt attgcaactt taactatata ttattcccat ttaaattgtt ctttagtttt      1140
     aagagaaaag tattcaaaaa atattaatag tcgaaatagt gttttaagag ttagatttca      1200
     gtaagaagaa tatgaatgtt gaagagatca cacgattttc tgttgcagag cttagagata      1260
     aactaaaaga attgaatttg aaaagttcag ggaacaaacc agagttacag cagagactag      1320
     tatcctattt tgagggaaat aatatagacc cagaggaaac tttagagcac tcagaggact      1380
     catcagtgta tgaagaatca cacacactta atactccttc aaccatggcg tttacactaa      1440
     gagacgttga agattccctt tctgcattta ccggaagcgg ttctcccaat atcgatgaat      1500
     ggttgacaga ttttgaacta aattccgtta cagttgggtg gactgatctt caaaaattta      1560
     tttacggcag gcagttagtg aagggagctg cgaagttatt cttaggcagc caaccaggga      1620
     ataaatgatt ggaattcatt gaaagaagcc ctaagaaatg agtttggaga aaagctcgca      1680
     gcaaaacagg tccacaagtt gctggaaaac aggaagaaga ctcgaaaaga gagtttaatt      1740
     gaatatttct acagcatgac tgctttggct aatcagtcca agttggatga ggaaagcatc      1800
     atcgattaca tcatagaggg tataccagac tcaaagcaaa ataaaagctg cttataccaa      1860
     gcttctaatc ttaaggagtt ccgtgaaaaa cttaagattt atgagaagat aagtgcgagt      1920
     cagagctata agcagaagcc aaggtttgaa attccgttaa acagagcaat ccaagagaca      1980
     agacgctgtt ttaagtgtgg cggcagcaac cacatcgcaa aggactgtaa agaagcaagc      2040
     attaaatgtt tcaagtgtaa ccagatagga cacaaggcaa atcagtgcgg taccagagag      2100
     actcgtaggg aaataaaaac gaaaattcca accatcaaca actgtcacgg tcgacctaca      2160
     atagagcatt caaaaacata agtattggaa acggtcagat tacggcatta tttgattctg      2220
     gcagcgatat ttgtactatt tgcgagacag cttacatgcg aatccatcca ggcattttaa      2280
     aaccaaatat taaggagcta gttggaattg gaggcaaaaa gatctacact ttaggctcgt      2340
     ttatgattgc tacaaagttg gacgacgttg ccattgacat gtgcttccat gtggtccgcg      2400
     acaaagatac tctttatgaa ggtgtgattg gcagtgatgt tttggacaac gtaaacgcaa      2460
     ctattggagc aaagggagtg tttttccata aagtatcatc tgcaaatgtt catgatcgca      2520
     ctgtagtcga ggatcgagta attaataact ctagccggaa caatgagata aacatcactc      2580
     atcaaagtga ttatcaaaat gttgctgagg aagcttcaac tataccagac ttgacagaaa      2640
     cgtttcatca gttaatgaca gcagattttt acgaagagat tgtgccagat ttagatctca      2700
     ttcacctgtg ccatgattta aagtcggaag tggtggagtt aattaaaaca tatcagccac      2760
     ggaagcctga atcaagccca gtagaaatga agattctcct gacagatgaa attccagtgt      2820
     accagagacc cagacgttta ccgttcgagg ataacgagaa agttgttaag cagatcaagg      2880
     attggctcaa ggaaggaatc attcgccaaa gtgtttcgga atacgcctct cccattgtcc      2940
     tggtggccaa aaaggacggc actaaaaggc tctgttgcga ctatcggaaa ttgaaccaaa      3000
     agattattcg cgataatttc cctatggcac tgattgatga cgttttgcag aagcttcaaa      3060
     aaggaaaagt atttacaaca ttggatttat caaatggatt tttccatgtc cccgtacacg      3120
     agagttccag aaaatatacc tcgtttgtca ctcaaagcgg acagtacgaa ttctgcttcg      3180
     taccatttgg aatttccaat tctccagctg tgttcatgag gtacatattt gcggtgctca      3240
     gaccattaat tgaagacggt actctgattt tgtacatgga cgatctgata attccatcag      3300
     aagatgagcg tgaaggactg gagaaattta agaaggtttt gagtgtagca caagagtcag      3360
     gtctacgcat taagtgggag aagtgtcaga ttttacagaa aagagttcag ttcttagggt      3420
     atatagtcga aaatgccact atccaaccgt cagcagaaaa gacgtgggcg gtcgaaaatt      3480
     ttccagttcc gcgagacaag aaaggagttc agcgatatct tggcctaact tcctattttc      3540
     ggagatttgt gaaggatttt gccattattg ctagaccatt gtcaaatctg ctcaagaaaa      3600
     atgctttctt taaaattggc gaagaagagt tagcatcgtt taaccagtta aaactattct      3660
     tatccagatc tccagtatta aagttattcg accaaaagag tgccacagaa gtgcattgtg      3720
     atgcaagcat gtacggatac ggagctgtgc tcttgcaaaa agattctgtc gatcaagaat      3780
     atcacccggt ggagtacatg agccgcaaga caacagaaac tgaagagaaa tatccatctt      3840
     atgagctaga agtactcgct atagtacagg ctttaaggaa gtggagaatt tacttgctcg      3900
     gaaagaaggt aaagataata acagattgca atgcctttgc catgacaatg cgcaaaaatg      3960
     atgttcccgt taaagtagcc cgctgggcaa tgttcttgca agattttgat tatatcattg      4020
     agcatcgccc aggcacaagg atgaaacacg tcgacgcctt aagccgagtt cattgcttgt      4080
     taacccagga ttctgtcaga catcgaattc agcaggctca acttcaggat gagtggataa      4140
     aggctgttgt kaaagttttg gagacaaata cctatgacga tttctacctg aagcacgaaa      4200
     ttcttcacaa ggatccgata aaagagctta tcgtaattcc gtcagccatg gaagtcgaaa      4260
     taatccgcac agcccaccga caaggacact ttggagtcaa aaagacgatc gatctggttc      4320
     agcgtgatta ttatgtccca gaactagata gaaaagctca agcaattgtg aagwcttgtg      4380
     tagaatgtat agttggtgag gcgaagtatg ggaaaaagga gggttatctt aatacgataa      4440
     acaaatcaga tgaaccttta caaacgtacc acatcgacca cgttggtccg atggacttga      4500
     cmaaaaagca gtacaatcat atcctagtag tagtcgacgc tttttctaag tttgtgtggc      4560
     tttatcctac caaaagcact ggcgccgatg aggtcgtgga cagactacaa aggcaatcgg      4620
     aagtattcgg taatccaagc cgcttgataa cagatcgagg aacagcgttt acagcgaatg      4680
     tctttgagga atattgcaag gataacaata ttcaacattt gttagtagcc acaggagtgc      4740
     cccgcggcaa cggccaagtt gagcgtatca accggattgt catcacccta ctgaccaaac      4800
     tttgtgcaga agacccgaaa gcctggtaca aacacgtagg aagagttcaa cagtttataa      4860
     actcttcacc acctagaagt actaaactat ctccgtttaa aatcttaact ggaatgaaca      4920
     tgaagactaa gtacgatact gatttgggaa atttactgga agaagactat ttaagcgagt      4980
     tgcaagaagc aaaagaaaat attcgtcgag aagccaagga aaacatctca aagattcagg      5040
     atgaaaatcg caaggcatat aacaagtcta ggaaaccaga aacagactat aaaattgggg      5100
     atttagtcgc tatcaaacgt acgcagtttg gagccggttt gaagttgaag aagaagtttc      5160
     taggacccta tgccgttaca cgcaagttga gacatggaag atatctcgtg gaaaaggttg      5220
     gagatgatga aggtcctatc aagacaaaca cagttgcgga atacatgaaa ctatggtcgc      5280
     cgtcattcgg gacgaatgaa ttgtcagaat agccgaa                               5317
//
ID   Gypsy-4_DFi-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DFi_;
KW   Gypsy-4_DFi-I; Gypsy-4_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-290
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 896-896 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 290 BP; 111 A; 35 C; 63 G; 81 T; 0 other;
     tgtaggactg ccatcttgca tgagcgattc cagaaatctt gatttaacag aacatctgat        60
     tcttagcatt aggtttaaca gaagggaacg tcaagagagg gaaatataag aagttgagga       120
     gagtagagaa ttagcttgaa acgaagaagg tcgtgtgttc tctaagaaaa gaaatttgta       180
     acacgaagtg gaaaaactgt aaaagctgta tatcatatct atattaaata aagtgcttat       240
     attattaaac atttatcaaa tgaattggag tgaagaagcg attctctaca                  290
//
ID   Gypsy-4_DGri-I repbase;    DNA;    INV; 5808 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DGri_;
KW   Gypsy-4_DGri-LTR; Gypsy-4_DGri-I.
XX
NM   Gypsy-4_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5808
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1297-1297 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           812..2350
FT                 /product="Gypsy-4_DGri-I_1p"
FT                 /translation="MTGRETKEMEASHSYQLRSGGNSVAHSDSWEVAGAGV
FT                 MGGIGLVRSPVRPLAPVTDFNLPREDRDAVRQPEAAVDTEIVSAINVAILQ
FT                 AQETYRQSMDTGIAKALREEVRLGFQEMLKAINDIVRPTPPPVIRSQAPTE
FT                 TASAESGQQQKPHQGAIPKSRSTTKPPPKPPTKPERSTTSSGLSRACEWEW
FT                 RNPGPDQRQRENNRSRNFRQSSTIEGNRGTANHRRPNIEHHSGRPWVKMDK
FT                 WEVSFDGSNDRGSVEDFVFKVEYLKRQFQCPWDEILSNFHVLVKGRAREWY
FT                 WLHVRQRPIYSWDELRKALFARFRGSWDDVDRLQEMRQRQQLPGESVNDFI
FT                 QSMTSMASRLEIPLPEPKLIKLIKKGLRDSVGRYIYAMDVYSVDHLREECN
FT                 EVESSLGQRGSRLAYGTQAKYAGPGKNVSAICDDLEEKAKVEPEVDEIRVK
FT                 SSSSRPGCWNCSQQGHDWRNCLDKQRRVFCYRCGRPDALAPKCPDCGGNGR
FT                 VGVTRPGEVRSRTTPTQ"
FT   CDS           2272..5676
FT                 /product="Gypsy-4_DGri-I_2p"
FT                 /translation="MPRLWGKRTSGRDQTGRGALTNDSHSIIINTPTKSTV
FT                 SINCKHSRTLRHLPYEERIRAYMVARNKIFEERKLDGMRLVTQRVKKARER
FT                 CTKRRLVKRQVVESVKRGDNRDSRVFAEVSIEGKQIAGLLDTGASVSILGR
FT                 GSREFLAEIKVPMQRYVSSVRTASGEDRSIIGRVHTRVTYGEKEEDMTFYI
FT                 CPYLEQPAYLGIDFWRVFGLAPDVLGSMEAQTSEESKANLVEAIEHYVEEK
FT                 TLEPEVDAWELNEEQKSRLETVKAEFLSFENAGLGKTTAQTHKIELIEGAI
FT                 PVKDRHYPLSPAMEEVVWGEVDKMLALGVIEESDSPWSNRITIVRRPDKNR
FT                 FCLDARKLNAVTVKDAYPLPSIEGILSRIDQTYYISSVDLKFAFWQIELDE
FT                 SSKAYTAFTVPGRPLYQFVVMPFGLCNAAQRLCRLMDRVIPSLLRSNVFVY
FT                 LDDLLIIAPDFNTHMKYLGLVAQKLKEANLTIGLKKSKFCFKSLKYLGFIV
FT                 GGGTLRTDQDRVIAIQRIPNPKSAKEVRSFLGTAGWYRRFIKNFAEIAAPL
FT                 TDTLKGCQKGKFKLSDEAADAVRRLKEALTSAPVLVHADFSRRFYVQCDAS
FT                 HYGVGAVLFQVDSEGNERPIAFFSAKMDKHQANYSVTEKECLAAVLAVERF
FT                 RPYIEMMPFTVITDHASLKWLMSLRDLNGRLARWSLRLQRFDFQIEHRKGA
FT                 DNIVADTLSRSVAELALDLNRMLGFQTVEFESAEYKEIVAEVIRNQDRLPD
FT                 LCVEDGLLYKRTGFTRMEDEVEGTLWKLWVPESLTSTLIEQAHVDAKASHG
FT                 GVTKTLHRLRRQFYWPNMAVQVREYVRECVACKETKASNQRMQVSIGQEVK
FT                 TERPFQKLYIDFLGKYPRSKRGHAWVFVVVDHFSKFTFLKAMKDATADNVV
FT                 EFLINEVFFKFGVPETIHSDNGRQFVSKKFENMAEAFGISHMRTAIYSPQS
FT                 NAAERVNRTVLAAIRAYLEQDHREWDHFLPEIEVAIRNAVHSATGVTPFFA
FT                 VFGQQMYLNGASYKLARKLRSMGEHSISDLETQDKIRIVQDQVRLHLHKAF
FT                 ERSRQQYDKRARKFHAVPGQEVYRRNFVLSDFSKAFNAKFAKKFRKCRIVR
FT                 AVGNNAYEVEDLNGRSLGVVHAKDLRI"
XX
SQ   Sequence 5808 BP; 1651 A; 1190 C; 1606 G; 1361 T; 0 other;
     agaatggcgc ccaatggttt tttttgaaat catcaagatc gcgagaaccg tggtttaaga        60
     agcaggttca agcgatcagc gcatgcgaga tgaaatcaaa aaaccggaaa ttataaataa       120
     accgaaaagg cgagtcctcg cagtacgaat ggctactctt cgcgccgtac gaaaccgcga       180
     cttactatgg agaagatgct ctcaaagcaa ttgcgcggtg gaggcgaccc tgagagtacc       240
     ctgaagtctt gttttaagtg ttagtgctag gtttaaatgg gaaagaaaat tgcaagggtg       300
     gcttgttcgt tcaaaatgag cagttcaatt gcaccatgca tagggttttt tctttattaa       360
     aatagtatgc acatacgggt aaagttttgt tagaattttt gttaagtgtg tttccgctaa       420
     cttgggtgtc gacagcgaga ctctgttagg atagagtgac ccatggtaca atagagatgt       480
     aaccatgcgc tgcactctac cgatggacat cgtgtcggca aacaaatttg accggaaacg       540
     tgcccaaaag gacttaatca actggggacc gtcagcaaag ctgacgatcg aaccagttaa       600
     tgtcttcata aaaaattttt gtttgtctgt ttgagcgtga acagtttggc taacgacgta       660
     ggttggaatg acgattagta ccggctaaag gtgattctcc cttataagtt tgattgttaa       720
     agtacttgag ttatattgcg tgttgtgtta ttgtcttgtc gttatttatc agttaatagt       780
     ttaggtgata atattaggaa taaatttagt tatgacggga agggaaacca aggagatgga       840
     agcgagtcat tcctatcagt tgcggtcagg gggcaacagc gttgcgcact ccgattcttg       900
     ggaagtcgcg ggggcaggag taatgggggg catcggatta gtaagatccc ctgtaaggcc       960
     attagctcca gttaccgact ttaacttgcc acgagaagac cgcgacgcgg ttagacagcc      1020
     cgaggcagca gtggacaccg agatagtgtc tgcgattaac gttgcgattt tgcaagctca      1080
     ggaaacctac aggcagtcaa tggacacagg gatagcgaaa gcattgcggg aggaagtgcg      1140
     tctagggttt caagaaatgc tgaaagctat aaacgatata gtaagaccga cgccaccacc      1200
     cgtgattcgt agccaggcgc caacggaaac tgctagtgct gagtctggtc aacagcaaaa      1260
     gccacatcag ggggctatcc caaaatcacg ctcgaccacc aaaccacctc ctaagccgcc      1320
     gacaaagcca gagaggtcaa ccacctcaag cggactaagt cgtgcttgtg agtgggaatg      1380
     gcgcaaccca ggtccggacc agaggcaacg ggaaaataac cgaagcagaa atttcagaca      1440
     gtcgtcgaca attgaaggaa atcggggaac tgcgaaccat cgtcgtccga atatcgagca      1500
     tcactcaggt cgaccttggg tcaagatgga taagtgggaa gtgtcattcg acggctcgaa      1560
     tgacagaggg tccgtggagg atttcgtttt taaggtggaa tacctaaaga gacaattcca      1620
     gtgtccgtgg gacgaaatcc tcagcaactt ccacgtgcta gtaaaggggc gagcccgaga      1680
     atggtattgg ctccacgtga ggcaacgacc aatatactcg tgggatgaac tccgaaaggc      1740
     gctctttgca aggtttcgcg gaagttggga cgacgtcgat cgcttgcaag aaatgaggca      1800
     gcgtcaacaa ctccctgggg aatcggtaaa cgactttatt cagtcgatga cgagtatggc      1860
     ctcccgattg gaaataccgt tgccagagcc taaactgata aagttgatca aaaaaggcct      1920
     gagagattcg gttgggagat acatctatgc aatggatgta tactctgttg atcacctgcg      1980
     ggaagagtgt aacgaggttg aatcaagctt gggacagcgt ggttctcgtt tagcatatgg      2040
     tacgcaggca aaatacgcgg gaccaggtaa aaacgttagt gccatatgtg acgatctcga      2100
     ggagaaagcc aaagtcgagc cggaggtcga cgagattcgg gtgaaatcgt caagttcaag      2160
     gcctggatgt tggaactgta gccagcaggg acacgactgg aggaattgct tagataagca      2220
     gcgaagggtt ttttgctacc gttgtgggag accggacgca cttgctccta aatgcccaga      2280
     ttgtggggga aacggacgag tgggcgtgac cagaccggga gaggtgcgct cacgaacgac      2340
     tcccactcaa taattattaa tacaccaaca aagagtaccg ttagtataaa ttgcaagcat      2400
     agtaggacat taaggcacct accttatgaa gaaaggataa gggcatatat ggtagctagg      2460
     aataagattt ttgaggaacg aaagcttgat gggatgcgtt tagtgacgca aagggtgaag      2520
     aaggcgcgcg aacgatgcac gaagcgacgc ttggtgaaaa gacaagttgt ggaatcggtc      2580
     aagagaggag ataatcgaga ttcgagggtg tttgccgagg tcagcattga aggtaaacaa      2640
     attgcggggc ttttggatac cggtgcctca gtgagtattt tggggcgtgg ctctcgtgag      2700
     tttctggccg agatcaaggt tcccatgcag cgttatgtgt ctagcgtgag aaccgcttct      2760
     ggggaggacc gatccattat aggccgggta cacaccagag tcacatacgg agaaaaggag      2820
     gaggacatga cgttttacat ttgtccgtac ctcgaacagc cggcatattt aggcatagat      2880
     ttctggcgag tttttggatt agctcctgat gtattgggat caatggaagc gcaaacctct      2940
     gaagaatcga aggcaaattt agttgaagca atcgagcact atgtagaaga aaaaacttta      3000
     gagccggagg tggatgcttg ggagttgaac gaggagcaaa aaagtcgatt agaaacggta      3060
     aaagcagagt tcttgtcctt tgaaaacgca ggattgggga agacaacagc acaaacacat      3120
     aagatagaac tgatcgaagg ggctattccg gtgaaagacc gacactatcc gctgtccccg      3180
     gcgatggagg aagtagtttg gggcgaggtg gacaagatgc tggccctggg agttatcgaa      3240
     gaaagcgata gtccgtggag caaccgcatt acaatagtgc gaaggccgga caagaaccga      3300
     ttttgcttgg atgctcgcaa gcttaacgct gtcaccgtca aggacgctta tccacttcca      3360
     tccatcgaag ggatactttc gcgtatcgat cagacctact atatttctag cgtagatctg      3420
     aaattcgcat tctggcaaat agagttggac gaaagcagca aagcatacac ggcgtttacg      3480
     gtgcctggcc gcccactcta ccagttcgtc gtaatgcctt tcggactgtg taacgccgct      3540
     caaagacttt gccgtttaat ggatagggtt ataccgtcac tgcttaggtc caatgtgttc      3600
     gtgtacttgg atgatttgct gattatagct ccggacttta acacacatat gaaatatttg      3660
     ggactcgtgg cgcagaaact aaaagaggcc aatttgacaa ttggattaaa aaaatctaag      3720
     ttctgtttca agagtctgaa atatctaggg tttatagtag ggggagggac tttgcggacc      3780
     gatcaagacc gcgtgattgc aatacaaagg attccgaatc ccaaatccgc taaggaagtg      3840
     cgcagctttt taggaacagc cgggtggtat cgccgattca tcaagaattt cgcagaaata      3900
     gcagcaccac tgacggatac actaaagggg tgtcaaaaag ggaagtttaa gttgagtgac      3960
     gaggcagctg atgcggtgcg aaggttgaaa gaggcgctta catccgcccc agtactagtg      4020
     catgctgact tttcgcggag gttttacgtc caatgtgatg cgtcacatta cggtgttggg      4080
     gctgtactgt tccaagttga ttccgagggc aatgagagac cgatagcatt cttttccgcc      4140
     aagatggata aacaccaagc aaactactcg gtgacggaga aagaatgtct cgccgcggtg      4200
     ttagctgtcg aaaggttcag accatacatc gagatgatgc cgttcactgt gattacagac      4260
     cacgcaagtc tcaaatggct tatgtccttg cgtgacctaa acggacgttt agcgaggtgg      4320
     tcgttgcgcc tgcaacgttt tgattttcaa atcgaacacc gaaaaggggc tgacaacatc      4380
     gtcgccgaca ctctatctcg cagcgtagct gaactagcgc ttgacttgaa ccgaatgcta      4440
     ggtttccaga cagtcgaatt cgagtctgca gaatacaaag agattgtggc ggaggtcatt      4500
     agaaatcagg atcgattacc ggatttgtgc gttgaggacg gactgttgta caaacgaacc      4560
     gggtttacaa gaatggaaga cgaagtcgag ggtactttgt ggaagttatg ggtgcccgaa      4620
     tctcttactt caacgctcat agaacaagct cacgtagacg cgaaggcttc ccatggaggc      4680
     gtaacgaaaa ctctccatcg gttacggaga caattctact ggcccaacat ggcggttcaa      4740
     gttcgtgaat acgttaggga atgcgtggcg tgcaaagaaa cgaaggcttc gaaccaaagg      4800
     atgcaagtgt ccatagggca ggaagttaag accgaacgac cctttcagaa attgtacatt      4860
     gactttttgg gaaagtaccc acggtcaaaa agaggtcatg catgggtctt cgtagtcgtc      4920
     gatcactttt cgaaatttac gtttctgaag gccatgaaag acgctacggc agacaatgtg      4980
     gtggaattcc tgattaacga ggttttcttt aaattcggtg tccctgaaac catccattcg      5040
     gataacggtc gacaattcgt ttccaagaag ttcgaaaata tggccgaagc tttcgggatc      5100
     tcccacatga gaacggccat atattcccct caaagcaatg cagccgagcg cgtgaatcga      5160
     acggtgcttg cagcaatccg cgcgtatttg gagcaagatc atagagagtg ggatcacttc      5220
     ttaccagaaa ttgaggttgc gattcgtaat gctgtccatt cggcaaccgg ggtgacacca      5280
     ttttttgcgg tttttggaca gcagatgtat ttaaatggag ccagttacaa gctcgcacgg      5340
     aagctacggt cgatgggtga acactccatc tccgatttag aaacgcagga caagatccga      5400
     atagttcaag atcaggtgag gctgcatctg cacaaagcgt ttgaacgcag ccggcaacag      5460
     tacgacaagc gggctcggaa gtttcacgct gtgccaggcc aagaagttta taggcggaat      5520
     tttgtgctga gcgacttcag caaggccttc aacgcgaaat tcgcaaaaaa atttcgcaag      5580
     tgcaggattg ttagagccgt aggaaacaac gcgtatgagg tagaggatct aaacggaaga      5640
     tcgctagggg tcgtccatgc taaagatctt cggatttaac ggggatatag cgtgggtgtg      5700
     gcctacgttg ggcgaggttc acaatgggca acggtcggag cagacggagg aaatgcgacg      5760
     acaattttga tcgttcaagc gggcgcctaa ctttaaattc tcgtgtgt                   5808
//
ID   Gypsy-4_DGri-LTR repbase;    DNA;    INV; 1538 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   22-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DGri_;
KW   Gypsy-4_DGri-LTR; Gypsy-4_DGri-I.
XX
NM   Gypsy-4_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1538
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1298-1298 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1538 BP; 434 A; 308 C; 374 G; 422 T; 0 other;
     tgttgcattt gcagacatat cgatactcaa ttatcgtatg ccacaaccaa aagtgagatt        60
     taaagggcca cattgctgaa aagcgggaac aagttggcag ggtcagcaac gtgtgaggac       120
     attctccgca aggtggcgcg tttaagctta gggacgagaa cacatgtgga aaagaaaaaa       180
     aaaacgcagt gaggcaggtc gtggtccata gcgcttaaat ttgtgtgccg tacggatcga       240
     atggtgaagt acatttagga gtgccttgac cctccatatt cgctagacct tgtgaagcca       300
     aattcggcgt aagtgtgtct gtttgaataa atgttgtgct gcgctaattt tgtgggttat       360
     gtttaggtgg ccgacggcag gtcacgccgc aattgtgcaa tttatgtcat acgctccgaa       420
     gttgatgcaa caacgacctg gccgtcgcgc aaagattgcc ggatacgccc tcgaagctac       480
     tgcgaggaaa cactgggcga atacaccatc ccctgatttt ggcagcgcgc aagcgcaccg       540
     acggtatttc ttcagccggt gagtgcgttc cgatgtggaa taagtgccat cgggataagc       600
     ctttagtaac cagccgcgta gctcgagcgc agtacgcgca atcgacccag agtccaaatt       660
     aaattacaaa ttgtaaaaag aaagaaaaac aaaaaaaaga aacacatgtc aagaaaaaaa       720
     gggtgcgagt cgactgcgcg catgtgagca gtgctccagc acacccaccc ctactccagt       780
     atatttatgt aaatgtgaat gttagattaa gcaaatttgt tgaatgttgt gttaagttat       840
     tcgttattta cgttactgta tttatttatt catgcatcta ataattattt aaatttctaa       900
     gttgaccgtg ttcgtcaaca aaatccggcg tccggatttt tgccaaattg cagaatccat       960
     ttctttttgc acgagccccc catacaccga atacttatat tggagctcta atagggtagg      1020
     atagggattg aggaccacct aaagtaacag tcatatttgt tccatttttt tttattttgg      1080
     ttttatcgga tttggcaaga ttcccgattt aaattcaaaa ttgaatagcc gttgcagaat      1140
     acaacgctac ctagcggcgt attcagtaat taatacttca tagcatgtaa tgtttgttaa      1200
     taaattgtaa ggaaataacg atgatctgtg agtaagttaa atacagggga gaatcaccgg      1260
     gagcatggaa taaattagtc gtcaaccaca ataagggcga tgggcaattc gaatccgtgc      1320
     aagcccattg caggaagggc gggtacgtcg tggccataaa caccaggccc gtcagctgtt      1380
     tcgtttgttt ttgtgtgtgc atgtaggtct ttatgtagtg ttgtgcaggt cgagtttttt      1440
     ttttgtctgt accgtccacg ggcagggttg gagttaccca cctctgggaa tactgagcta      1500
     gccgaggttg cccactgcga aacactggac gtgttaca                              1538
//
ID   Gypsy-4_DHyd-I repbase;    DNA;    INV; 4754 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4754
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2409-2409 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..1419
FT                 /product="Gypsy-4_DHyd-I_1p"
FT                 /translation="MAQANPQMSSQQLYEQLINKERQLEELHQAYVTLQGN
FT                 TNTAQKERLFQNINYLATFTGTGDISINSFFSSVEYLLQGVEDTELRREAT
FT                 RTIFNKTIQGQAKDVVINIPEPDNWDLIKSTLKLRYRPDTEPHQIYRKIYE
FT                 LKVDTVSELVAELQNIKYKTDELKVYHQNDNFIDLSNVESLLVNAAKEMTQ
FT                 GTLLDKIYEERNLNEILKKMMLRRYENSCIRFQYKKSKPNRYNAEAESSKK
FT                 NHNYKNENIQQQNYDKKQQYYQQNYNNNKRSYYQPQSGHNKNQQKYQQNNS
FT                 GQYRQDYTQHNSGQSHPNQNHQQTNSQQSKQYRPRNSEPMEIENLETKQDT
FT                 NSYPETRNDYDQAEVNNTVFFMKQPRNAYHY"
FT   CDS           1377..4577
FT                 /product="Gypsy-4_DHyd-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="YSFFYEAASECLPLLELNIDKHRYIALIDTGASLSLV
FT                 NNQINGHTKIKLNKPISYSTINSKDIIEYEIHTTAPREFNLPNNARVRWKL
FT                 APLKGRKYNFIIGIDLLQFLSAVINIERNSLTLNHKENRIINKPYQYEEIC
FT                 ALESTIDKYDSLALDHLNTQEVIEVKKIIKRYSKLFFKEGDKLTSTTEIEH
FT                 EIRTTTDEQLNSKLYRYPPQHEEEVRKQIKEMEEQGIIRKSNSRYSSPLLV
FT                 IPKKLDNSKQKKFRIVIDYRKLNEITIDDKFPIPNINSILDKLGRAQYFTT
FT                 IDLAKGYHQILVKEEDRKKTAFVTPHGLYEFIRMPFGLKNAPATFQRLMNE
FT                 ILREFINKKCVVYLDDILIFSTSLQEHVEAINEIFKVLEDKNLKIQIDKCN
FT                 FMKKETEFLGHILTKEGIKPNPNKIAIIEKLPLPKTEKEIKSFLGITGFYR
FT                 KFIKDYAKVAQPITKYLKKNTKINTKDPTFIEAFEKLKQLICSHPILRFPN
FT                 FEKAFTLTTDASNYAIGSVLSQEGHPICFASRTLNNHEKNYSATDKEFLAI
FT                 LWSVNYFRPYLYGRKFKLLTDHQAIKFLYSKHKGKDISPRHQRWLLKLGEY
FT                 QFDIDYLRGRENRVADFLSRIKGNDFDPQQDNNDNISDINIITNIEDTEDK
FT                 YSIAATIHSAEENLQDHFLIREEIVNKYKTQIIITNSKTEECKSIHGKRII
FT                 FIAKHDFPTMEEIFTKYLNKGKVGIYSDLPDQEYNIVQEKLVQLYSNNKQI
FT                 EFTKCTHRAQDIETETDAVKQISIYHVQESMHSGIQETYNKIKNKIFYPKL
FT                 LELIQRVINQCDFCKEVKYDRNPVKNKFVKTETPSDKNQIIHIDTYVIKNT
FT                 YFLTIIDKFSKFAAVYPLNDRNHITIVEQIENHFTKIGKPNKIVADNEFNS
FT                 IRIKELLSRENIELHLTKPNSHTGNADVERLHNSLAEKFRIIYNTKTENIS
FT                 VKQIMQRAVRNYNDRYHSTIKCTPFEAHNNKMDFKIIRNNIVTTKIKMLDK
FT                 NNQNRENYEEKREEGFIKNYKAVRHKEVPKFKKAKLKNINPANIKRVYKYT
FT                 EDKNDNSSNT"
XX
SQ   Sequence 4754 BP; 2158 A; 754 C; 713 G; 1129 T; 0 other;
     ggcgcagccg gtaggatcct ttttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa        60
     aggattctgt gataaattcg aactaaaaat aagtcgacaa atttataaat cgatcattat       120
     aaaataaaaa gtcaaactaa aaataagttg acaagtttta taaatcgaaa aaagaggtca       180
     aactacaaat aagttgacaa ctttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagtac       240
     atctcaacgc tggcaaccag aaaacaaaag agagcagtat attacgacaa aagcaggatg       300
     gcacaagcta acccacaaat gtcatcgcag caattatatg agcagttgat caacaaggag       360
     cggcaactag aggagctaca tcaagcttac gtcacgctcc agggaaacac caatacggct       420
     cagaaggaac ggttgtttca aaacatcaat tatttggcaa cgttcacggg aacaggtgat       480
     atatcgatta actcgttctt cagcagcgtg gagtaccttc tccaaggagt ggaggacact       540
     gaactaagac gagaggccac taggacaatc ttcaacaaga caattcaagg acaggcgaag       600
     gatgtagtta tcaatatacc ggaaccagac aactgggacc taatcaagtc aaccctaaag       660
     ctaaggtatc gaccggacac ggaaccccat caaatttacc gtaaaattta tgagttaaaa       720
     gtagacacag taagcgaact ggtagcagaa ctacaaaata ttaagtataa aacagacgaa       780
     ttaaaagttt accatcaaaa cgataatttc atagatttaa gtaacgtaga aagtttacta       840
     gtaaatgcag ctaaagaaat gactcaaggc actttacttg ataaaatata cgaagaaaga       900
     aatttaaatg agattctaaa aaaaatgatg ttacgtagat acgaaaatag ttgtattaga       960
     tttcaatata agaaaagtaa acccaatagg tataacgctg aggctgagtc tagcaagaaa      1020
     aatcataact acaaaaacga aaatatccaa caacaaaatt atgacaagaa gcaacaatat      1080
     tatcaacaaa attataacaa taacaagcga tcttattatc aaccacaaag tggtcacaac      1140
     aaaaatcaac aaaaatacca acaaaacaac tcaggtcagt acagacaaga ttatactcaa      1200
     cacaattcag gacagagtca ccctaaccaa aatcatcagc aaacaaattc acaacagtca      1260
     aaacagtata ggccaaggaa ttcagaaccc atggaaatag aaaacctaga aacaaagcaa      1320
     gatacaaaca gttacccaga aacaagaaat gactacgacc aggcagaggt taataataca      1380
     gtttttttta tgaagcagcc tcggaatgcc taccattatt agaactaaac atcgataaac      1440
     atagatatat agcattaata gatacaggag caagtttaag tctagttaac aaccaaatta      1500
     atgggcacac aaagattaag ctgaataaac ccatatcata tagcacaatt aatagtaagg      1560
     acataataga gtatgaaatt catacaacag cacctagaga atttaattta ccaaacaacg      1620
     ctagagtccg ctggaagtta gccccactaa agggaagaaa atataacttt attataggta      1680
     tagaccttct acaattttta agtgcagtta ttaatattga aagaaacagt ttaacattaa      1740
     atcacaaaga aaaccgtata ataaataagc catatcaata tgaagaaatc tgtgcattag      1800
     aaagtactat agataaatat gatagcttgg cattagatca tttaaataca caagaagtaa      1860
     ttgaagttaa gaaaattata aaacgatata gtaaactttt tttcaaagaa ggagataaac      1920
     taactagtac aaccgaaata gaacatgaaa tacggacaac tacagatgaa caacttaatt      1980
     caaagctata tagataccca ccacagcatg aggaagaagt cagaaaacag ataaaagaaa      2040
     tggaagaaca gggaattatt agaaaaagca attcaagata ttcgagtcca cttttagtaa      2100
     taccaaaaaa gttagacaat tcaaaacaaa aaaaattccg cattgtaata gattatagaa      2160
     aacttaatga aataaccatc gacgataaat ttccgattcc caatataaat tcaattcttg      2220
     ataaactcgg aagagcccag tacttcacaa caatagatct agcaaaaggc taccatcaaa      2280
     ttttagtaaa agaggaagac agaaaaaaaa ctgccttcgt tacgccgcat ggcttatatg      2340
     aatttattag aatgccattt gggttgaaaa atgcccctgc cactttccaa agactaatga      2400
     atgaaatctt aagagagttt attaacaaaa aatgtgtcgt gtatttggac gacatactta      2460
     tttttagcac atcgttgcaa gagcatgttg aagccatcaa cgaaatattt aaagtattag      2520
     aggataagaa tttgaagatt caaatcgata agtgtaactt catgaagaag gagacagaat      2580
     ttttaggtca tatcttaacc aaagaaggca ttaaaccaaa tccaaacaaa atagccataa      2640
     tagaaaagtt acctttacca aaaacagaaa aggagataaa aagtttttta ggcataacag      2700
     gtttctacag aaaatttatt aaagattacg caaaagtagc acaacccata acaaaatatt      2760
     taaagaaaaa tactaaaata aatacaaaag atccaacttt catcgaagca tttgaaaagt      2820
     taaagcagct tatttgttca caccctatat taagatttcc taactttgaa aaagcattca      2880
     cgcttacaac tgacgcttca aattatgcca taggatcggt tctttctcaa gaagggcatc      2940
     caatttgttt tgcgtcaagg acattgaaca atcatgagaa aaattattca gcgacagata      3000
     aagaattttt agcaatacta tggagtgtaa actattttag accatatctc tacggaagaa      3060
     aattcaaatt attaacagat caccaagcga taaaattctt atattcaaaa cataaaggga      3120
     aagatatttc gccaaggcat caaagatggt tactaaaact aggagaatat cagtttgaca      3180
     tagattactt aagaggaaga gaaaacagag tagccgattt cttaagcaga ataaaaggta      3240
     atgattttga cccacagcaa gataacaatg acaatatatc agacataaac attataacaa      3300
     atattgaaga cacagaagat aaatattcga tagcagcaac tatacattca gcagaagaaa      3360
     atttacagga tcattttcta ataagggaag aaatagtaaa taaatataaa acacaaataa      3420
     taataacaaa ttccaaaaca gaagagtgta aatcgattca tggaaaaaga ataattttca      3480
     tagcaaaaca cgacttccca acaatggaag aaatttttac gaaatactta aacaaaggaa      3540
     aagtaggcat atattcagat ctaccggatc aggaatataa tatagtacaa gaaaaattag      3600
     ttcaattata ctctaacaac aaacaaatag aattcactaa atgcacacat agagctcaag      3660
     atatagaaac tgaaacggac gctgtaaaac aaatatctat ttaccatgta caagagagta      3720
     tgcattcagg tattcaagag acgtataaca aaataaaaaa taaaatattt taccctaagt      3780
     tattagaatt aatacagaga gtgatcaacc aatgcgactt ttgcaaagaa gtcaaatatg      3840
     acagaaaccc agttaaaaac aaatttgtta aaacagaaac tccctcggat aaaaaccaaa      3900
     taatacatat agacacatac gtaataaaaa acacatattt tttaactatt atagataaat      3960
     tttcaaaatt cgcagccgtt tacccactaa acgataggaa ccatataacc attgtagagc      4020
     agatcgaaaa tcattttact aaaataggca aaccaaataa gattgtagct gacaatgaat      4080
     ttaattcaat aagaattaaa gaactattaa gccgagaaaa tattgaatta catttaacaa      4140
     aaccgaacag ccatacaggc aatgcagatg tagaaagact gcataactca ttggcagaaa      4200
     aatttaggat aatatataat actaaaacag aaaacatatc agtaaaacaa attatgcaaa      4260
     gggcagtaag aaattataac gacaggtacc actctactat taaatgcaca ccttttgaag      4320
     cgcataataa taaaatggat tttaaaatca ttaggaataa tatagtaacc actaaaatca      4380
     agatgcttga taaaaacaac caaaacagag aaaattatga agaaaaaaga gaagaggggt      4440
     ttattaaaaa ctataaagca gtaagacaca aagaagtacc aaagtttaaa aaagctaaac      4500
     ttaagaatat taacccagca aatataaaac gtgtttacaa atatacagaa gacaagaatg      4560
     ataactcatc aaatacctaa ctgaaaaaaa aaaaaataaa taaaacctat aacaattaat      4620
     ctatgaatgt aaacaagtca atattcataa ttcaaaacaa taattataag taatacctac      4680
     cttatatatt accgctaata agaaagttaa taacaataca gaattcagga gaattcttat      4740
     ttaaatgagg gaga                                                        4754
//
ID   Gypsy-4_DHyd-LTR repbase;    DNA;    INV; 339 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-339
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2418-2418 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often CGCG.
XX
SQ   Sequence 339 BP; 146 A; 49 C; 54 G; 90 T; 0 other;
     agttatatat gcatttaagg taatcgatat aagcatagtt ttaagagatt tctcatcact        60
     aaaagacaaa gtccatacct aaatgttgca tgtttaggat gatgaaaaaa ccagcaacat       120
     tatgaaatta aaattacaaa gaaatacata tccactaagc tgacgccaga atagtctagc       180
     aacatgttga aactgaaatt ataaagaaac ggctatgtcg ccagaataga ctaggattaa       240
     gaagaaaaat cgaataaaga tcagttctaa tctgagactt aactgaagag gttgagccat       300
     gttttttaat ttcaaaaaca aagaactcaa aacaaaatt                              339
//
ID   Gypsy-4_DKi-I repbase;    DNA;    INV; 4187 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.07, Created)
DT   29-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DKi_;
KW   Gypsy-4_DKi-LTR; Gypsy-4_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4187
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1311-1311 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3221-3733] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2285..4165
FT                 /product="Gypsy-4_DKi-I_2p"
FT                 /translation="MINFYRRFLPNAIQHQAPLNQLIPGNKKNDSTPITWT
FT                 AATINNFNECKRTLAEATLLVHPAPTAPLSLCTDASDFAVGAVLHQVVDNQ
FT                 LQPMGFFSVKLTETQRKYSTYDRELLAIYLSIKHFRDMLEGRTFDIRTDHK
FT                 PLVYAFSQKPEKASPRQLRQLDFISQFTTSIVHVAGIENTTADTLSRISSI
FT                 DREIIDYKQLSIAQANCEELKRLLSDNTTALQLKSISIPNSTNSVICDLST
FT                 SSVRPFVPESLRKNVISKLHNISHSGVGSTIKLIKQRFVWPSMHKDISQFV
FT                 KHCVPCQKSKISRHVRSPLQHFTLPTQRFDHINLDLIGPLPQSGQYRYCLT
FT                 IIDRYTRWPEAIAIEDMHANTVASALIGSWISRFGVPARITTDQGRQFESK
FT                 LFHELSRMLGIDHLRTTAYHPQANGIIERWHRTLKAAIMCKNRMNWPQKLP
FT                 MILLGLRSAFKPDIQTTSAQLVYGTTLRLPGEFFHQKSNFQPQTEFAKELE
FT                 EIMREIRPTQTAHHDSSKPFVFKELEHATHVFLRNDTVRGSLQPPYDGPFE
FT                 VKEKQTKYFTINTGARCIKVSIDRLKPAFIEAQQPTNTPSPSPNPSSNPNI
FT                 RTEDITTTPAANQPSRPRRTIRLPVRFTT"
XX
SQ   Sequence 4187 BP; 1300 A; 1243 C; 750 G; 893 T; 1 other;
     taactggtga cccccgacaa ttcgaacatc tgcaacaaaa gcgaacaaag tccaacttac        60
     caacctcaac ataacctaac acaatgccag accacgagga tttcgtcgat gcgcaggaac       120
     cattgcaaat ccctgatccg agtgccgtta actcggtatt tgccaaaatg cccttccctc       180
     aactaaattc cattaccaac atcgaaatgt ttttcaccaa actggagagc tggtttttgc       240
     tgcaaggcct tggcgcacgc aaagaacaag agaaatatgc ggcagtaatc gcgtacgccg       300
     atcccaaata cctcgatcaa gtgcacgatc ttgtcaataa cccaccacaa acgaatccgt       360
     actccacact taaacaagca attttgtcta aatttgccga atcagagatg gtgcgcctcg       420
     acaggcttgc gacaggaatt caactcggcg acggtcgtcc aagccatcta ctcagccaac       480
     ttcagcaaac aaacgccacc aatgacgaat cggttgtgcg tcgctactgg atcaagcgcc       540
     taccaccacc tgcacgtgct gtaatcgtag gcctacttga aagctctccc aacaccaccc       600
     tcgcacagct cgcaactgcc gccgacgctg tgatggattc tctcaactac gacacttcag       660
     accacatgtg tgcggtatca caacaaaacg cccaccatgc ttcacagggg gatcgcatca       720
     cacaactagg taaacgccta gacgacaacg acaaaattct gcagcagatc aacaacaagc       780
     taagtcaact gcttagcacc acaaatcaac aacgcggtcg gagttacaat cgatcgccca       840
     gcaacaacag ctaccggagc aacacaccat ccagggacaa ctctaaccct caattgtgct       900
     ggtaccacaa taaatacgcg gacggtgccc aacgctgcat ccaaccgtgc tctttccaca       960
     ccaacaacag ttcaaaaaac taagcaccac cgttggaaat ccacagggca gttccgacgg      1020
     tcgtaacgca aatgccccac aacgcctacc attgctcaaa gtaaacatct gcagaatttc      1080
     gtcctctaac cgtctcttcg ttccagactc cacatcggga aaaagttttc tcatcgacac      1140
     tggagctgac gtatccgtta taccaccaaa cacaatcaat cggcacatcg cagctgctaa      1200
     cagccataca ctattcgcag ccaatggaac agcaattcaa acttatggaa ccactcgcct      1260
     tacgctggat ctcggtctac gtcgcccttt cacatggatt tttaccatag ccgacacaaa      1320
     atcccaatca ttggttcaga cttcttgcag cactttaatc tactggtcga ccttaaaaac      1380
     tcaagattag tcgacgtcga aacacgccta tcatgctgtg gaatgtttag ccaacaatca      1440
     acctcggaga tcaggacata caacattcac tgcgagttct ccaaactact ggaagaattt      1500
     aaggacatca cacagctcaa ctcaagtcct ccacaagcaa cagccaccaa cgtcacacat      1560
     tgcatcgaaa ccaaaggatc tccaccattc gctaggccca gaaggcttac tccagaaaaa      1620
     ttcctagcag caaaaagtga gttccagtac ctaatcaacc ttggcgtttg ccgcccgtca      1680
     aagagccctt acgcctcccc gttacacatg gtccgtaagg ccactggtga atggcgtcca      1740
     tgcggtgatt accgagccct caacgcacaa accaccccag atcggtatcc cttaccgcac      1800
     atacaagact gtactcatat attttacggg aaacacgttt tttcaaagat cgatctaaac      1860
     cgagcttacc atcaaattcc catcgaggcc cgagacattc caaaaacggc cataactact      1920
     cctttcggtt tattcgaatt cacccacatg acattcgggt tgtgcaacgc ggcacaaaca      1980
     ttccaacgat acatgcatac cgcactgtca gagatggatt ttgtcttcgt ttatgtcgat      2040
     gacattgcgg tcgcatcagt caacatggag cagcaccaac ttcacctccg ccaagttttt      2100
     gaacgactac gacaattcaa cctcaccatt aatccagcaa aatgcagttt cggaaaaaaa      2160
     gwcgatcgaa ttcttaggac accatatcga ctcaaacggc atcaaaccac tgccagaaaa      2220
     agttaaggcc atctcggatt ttccactgcc caaaatcgct aaggagctac gcaggttctt      2280
     ggcaatgatt aatttttaca ggcgattttt gccaaatgca atccagcacc aggcaccact      2340
     aaatcaactc atccctggaa ataagaagaa tgactcaact ccaatcactt ggactgccgc      2400
     caccatcaac aatttcaatg agtgtaaacg aacccttgca gaggcaacac tactcgtcca      2460
     cccagcaccg actgcgccac tgtctctctg tacagatgca agcgatttcg cagtgggagc      2520
     cgtgctacat caagtcgtcg acaatcagct acaaccaatg ggattcttca gtgtaaaact      2580
     aacagaaacg caacgcaagt atagcacata cgatcgagag ctcctcgcca tatacctcag      2640
     cattaaacac tttcgcgaca tgctagaagg acgaacattt gacattcgca cagatcataa      2700
     acctttggta tacgcttttt cgcagaaacc ggaaaaagcc tctccacgac aactccgaca      2760
     attggatttc atcagccaat tcaccacctc tattgttcat gtggctggaa tagaaaacac      2820
     tactgctgac acgctttccc gcatatcatc catcgaccgc gaaatcatcg actacaagca      2880
     actcagcatc gcacaagcaa actgcgagga actaaaacga ctactcagcg acaacaccac      2940
     agcattgcag ttaaagtcaa tcagcattcc caactctaca aactctgtaa tatgcgatct      3000
     atccacatcc agcgttcgac cttttgttcc agagtcacta aggaagaacg tcatcagcaa      3060
     actacacaac atttctcaca gcggagttgg atcaacgata aagctcatca aacaacggtt      3120
     tgtatggccc tcaatgcaca aggacatttc gcaattcgta aaacactgcg ttccttgcca      3180
     aaaatcaaaa atttcccgac acgttcgctc accgctacag cacttcacgc ttcctactca      3240
     aagatttgac cacatcaatc tggatctcat cggaccatta ccccaatcag gtcaatatag      3300
     atactgctta acaatcattg accgttatac acgttggccg gaagccatcg caatcgagga      3360
     catgcacgcc aacacggtag cctcagcact catcggctcc tggatctcaa gatttggagt      3420
     tccagcccgc atcacaacag accaaggaag acagttcgag tccaaattgt tccatgaatt      3480
     gtcacgaatg cttggaatag atcaccttcg cacaacagca tatcacccgc aagcaaatgg      3540
     aatcatcgaa cgctggcaca gaacacttaa ggcagccatc atgtgcaaga atcgcatgaa      3600
     ttggccacag aaacttccaa tgatcctgct cggtttgcga tcagcattta agccagacat      3660
     ccaaacaaca tcagcacaac ttgtgtacgg cacaaccctt cgcctcccag gagaattttt      3720
     tcatcaaaag tcaaacttcc aaccgcagac tgagttcgca aaggaactgg aggaaattat      3780
     gcgagaaata cggccaaccc agacggcaca ccatgactca tctaagccct tcgtttttaa      3840
     agagctggaa catgcaactc acgtcttctt acgcaacgac accgtccgtg gatctcttca      3900
     gccgccttac gatggaccct ttgaagtaaa agaaaagcaa accaaatact tcaccataaa      3960
     caccggcgcc cgatgcatca aagtttctat tgaccgactc aagccagcct tcatagaggc      4020
     tcagcagcca acaaacacac catcaccttc accaaaccca tccagtaacc ccaacatcag      4080
     gactgaagac atcacgacga cccctgcagc taatcaacct tcaagacctc gtcgcacaat      4140
     tagactccct gttcgtttca caacatgaac tctagggggg agtactg                    4187
//
ID   Gypsy-4_DKi-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 17.07, Created)
DT   29-JUL-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DKi_;
KW   Gypsy-4_DKi-I; Gypsy-4_DKi-LTR.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-295
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1312-1312 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 295 BP; 88 A; 72 C; 50 G; 85 T; 0 other;
     tggcgatcat gttttgacat ctggcatcgc cgggaaactt cccggactta tgctttgcca        60
     tctggcattg cccggaaact tcccggactt ccaggattag agatttatct aagaagatac       120
     tctggtcaca ctctctcata aacccacgct acgaaagccc accaaaaaga gatctctcac       180
     tgatattcaa ttcgtttaca tttatcctct aatacaagta caaaatatag attaaactga       240
     agcccgttct cgtgttttaa taaagtgcaa catattagct tggttcaagt aacca            295
//
ID   Gypsy-4_DMel-I repbase;    DNA;    INV; 7255 BP.
XX
AC   .
XX
DT   06-AUG-2018 (Rel. 24.06, Created)
DT   06-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7255
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1041-1041 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           949..2403
FT                 /product="Gypsy-4_DMel-I_1p"
FT                 /translation="MSNPNNLIRPAVFDTVETSRRQVAFQQHRDMAQNNDV
FT                 AQTIRQIITEQLPVLLQQAQTNSFDFTNAENQSINPEHQRNLDDLDKVPDI
FT                 VKGLREFSGNPAEFGSWKKGVDRILGTYGHIKGTSKYFGILHTIRNKITGN
FT                 ADIALEAYNVPLNWTAISKCLTLHFADKRDLSTLEYQMTTIIQGPNQSVED
FT                 FHQNVYKHLSLILNRISCMDLNIESQQLMTKLYRDKALDTFIRGLRGDLSR
FT                 LLGMKEPTDLPTALHLCLKLENQAFRSNHANNRAQSTNFRQASQPPLRPPP
FT                 IQRQLPIISNPNFQARPFSQPSMAPQPAPLIFPRQNNINFGQYYPKPILPN
FT                 VGPIPIAARTQYMPPPRPFAAKPQPRPEPMDVDRSLHTRQINYMNRPNPGE
FT                 AGKRPPMPFATQNDVTKKQRHFNIETSQTDTTSNTDEQKETEESEMSAYVQ
FT                 TIANQEEQADFEQSLTEYSEIINDNNENYQYDYTYVNFLE"
FT   CDS           2589..5531
FT                 /product="Gypsy-4_DMel-I_2p"
FT                 /translation="MAYLFDDPNAIVKFFLLPTLKTFDAILGNDSLKELGA
FT                 IIDTGKKLMYLKSGKIIPLKEEKFEQINVIIPNLDHLSPNQKIELNRLLKK
FT                 YPNLFAEPNEKLTYTTNVKAEIRTNTDTPVYSKFYQYPMSLKNEVDKQIIE
FT                 LLDNNIIRPSRSPYNSPVWIVPKKLDSSNIKKYRMVIDYRKLNSVTISDRY
FT                 PIPDINGVLAQLGNNKIFSVLDLKSGFHQILLKDSDIEKTAFSVNNGKYEF
FT                 MRLPFGLKNAPSIFQRALDDILREHIGKICYIYIDDIIVFSKDELTHCENL
FT                 DQIFKTLNSANIKCQLDKCDFFKTKVEFLGFVISDKGIETNPNKVKAIANY
FT                 PCPKTLKELRSFLGLSGYYRRFIRGYASIAKPLTTLLRGEDGRISKGASSK
FT                 KLIQLDKEALKAFEQLKNALISDEVILHYPDFNKEFTLTTDASDYAIGAVL
FT                 SQANQPIAFISRTLSKTEESYETARKEMLAIFWAVKSFNGYLYGGSKVKIY
FT                 TDHEPLTHDCNWKGSIAVRRWKSYLDEYDKELIYKPGKENVVADALSRIKS
FT                 QGEVNSLTATQHSGQSSGHNLIPSIETPINAFKNQIFILKEEPPDYKFTIP
FT                 FPTFHRHTISKPHFSDSDLIELLTKYLNPTVINGIQTSEDLMGQIQNLYPK
FT                 HFSTIKIRFTQSRVKDLTTELEQDEIILETHNRAHRNAEENKIQISEKYYF
FT                 PKMKNKISMLVKQCQVCKEGKYDRHPPNPVLKETPIPEYPGHTIHIDIFST
FT                 EKKLVLTAIDKFSKLAQARVIESKAIEHIKKPLNDILFYYGVPKFVVMDNE
FT                 KSFNSASINFMMKDQLGIEIFRVPPYKSTVNGQIERFHSTLSEIMRCLKSK
FT                 QVYQTFEELLDRTIYEYNYTIHSVTKQRPLEVFFGRNVTTDPEQFEKSRQD
FT                 NITRLRNKQQQDLENHNKKRKEIKTYQPGQEIFVKQNTRLGSKLSKRYKKE
FT                 IVKQNNRTTIITETGKIVHKSNIKND"
FT   CDS           5632..7215
FT                 /product="Gypsy-4_DMel-I_3p"
FT                 /translation="MHPIVTNRPMPLKKLIVIPLNSRCRLLLLIFWLPMIT
FT                 ATLEITNYTDAHTITIHKGIGKIQSASIKMIHLINLKQIEEELFNIREHTV
FT                 NDLKKSYLYHTLTHEITQAFSALNTLTFKNHNKRSINWIGSAWKYVAGNPD
FT                 HDDLAMIENNINNLITNNNEQIIINQQLQTRINSLTTVSNMLKNSIRKDSS
FT                 FNNEIATSLQNQVRLLKEELINVKYAMQWARLNIINTLLLSDTELDEVHET
FT                 FKRGNITSLSVEEMLELVDVSVLHNKTTIAYIIKIPELEPITYQNILVKPV
FT                 LRNNSIIHLEANEIFLYKDILLKTPENCKLSKNIKICKKQNIVNLSKSKCI
FT                 TKLVQGKASLCDYANAEHIQRVEEIDNSLILLNNFNGTIQHDNTTQQLNGT
FT                 YLLHFWNDTILIDKKEFTNKEKTIIKPGIPIIQMSPIEAERFQILSLESLH
FT                 ALNIKNIGHLEEIKTHSIMNRIAIITLIATTIILIILSKTFIRKKENITLQ
FT                 IQQEPLKNLNNQIKKTNITNSIQPEFNNIPYF"
XX
SQ   Sequence 7255 BP; 2920 A; 1445 C; 1083 G; 1807 T; 0 other;
     ggcgcccgaa cagggaccag tggaaacgga tacagtctca ttaagttaag acttgaggat        60
     taatttccca tcccaactca ctggcccgct gttaccagag gactcatccc ttaagacgga       120
     tctggtgcag caaaacccca tcggtggatc gcaagtcttg tcaggtcagc ccgcaggaca       180
     acctctattg gagtgatcgc aggatcccaa gtagcaacag caaacaggaa cacatccgga       240
     tcaacgggag gagtgaccac atcaatctca ataatgtaag ctagtgaata agtgcaaaat       300
     taaacttacc taaaacgaaa gaaagaaaag tgaaaacaca attaaaattc aataagctaa       360
     aagaaaagtt ttaaaataac aaaattatta actaagtgaa acaaaattta aatttaaatt       420
     aagtaatagt gaagtgaaaa atatttaacg aaattgcaaa tattcaaagt gtgctttaat       480
     aaattacatc aaactgcgta aagcgataat taaaaccaca ctgcattgca ccaaataaaa       540
     agtgcattta ttagtgcagt ataaattaaa cccaatcttg cgattccgaa atcaaaggac       600
     cctccaaggt agaagggtaa aaccagccac tggttttcac acaatctaaa acaaacccaa       660
     taaattaaat ctaaataata ctgaataaaa tcacacatgc aatttcttta aatacgattc       720
     acacacgaaa tattcataca aaaataattg cttgcaccaa ccaaatagga caaccaaaat       780
     tatttaataa gcattaatta caatttctat ttcgataagt gataagtttt atataatttt       840
     caactcttca agaccaatta ttttattcga cacttgccca tacaaagttt agtataaatt       900
     ttataatcta cagagtaaaa ttttaaaata agttaacttt tcaaatcaat gtcaaacccg       960
     aataatctta ttagacccgc agtatttgat acagtagaaa ctagcagaag gcaagtagct      1020
     ttccaacaac acagagacat ggcacaaaac aacgacgtag cacaaactat taggcagatt      1080
     ataacagaac aattgcctgt tctgttacag caagcccaaa caaactcatt cgacttcact      1140
     aacgcagaaa atcagagtat caaccccgaa caccaaagaa atttggatga cttagataag      1200
     gttccagaca tagtaaaggg actacgcgaa ttttcaggca atccagcaga gttcggctcc      1260
     tggaaaaagg gtgtagatag gattctagga acatacgggc acattaaagg cacatctaaa      1320
     tattttggca tattgcacac aattcgcaat aaaatcactg gcaatgccga tattgcttta      1380
     gaagcttaca acgttcccct taactggact gcaatatcta aatgccttac cctacatttc      1440
     gctgataaaa gagatttgag tactttagag tatcagatga ctacaataat acaaggtccc      1500
     aatcaatctg tagaagactt ccaccaaaat gtctataaac acctatctct gatattgaat      1560
     agaattagtt gcatggactt aaacattgag tcacagcaac taatgaccaa attatatagg      1620
     gacaaagctt tggacacttt tattagagga ctacggggag acttgtcacg attattgggt      1680
     atgaaagaac ccaccgattt acccacagcc ttacatctct gcttgaaatt agaaaatcaa      1740
     gctttcaggt ccaaccatgc caacaataga gcgcaatcaa ctaacttccg gcaggcatct      1800
     cagcctccac taagacctcc accaattcag aggcagctcc caattattag caacccgaac      1860
     tttcaagcca ggccattttc acaaccaagc atggctccac aaccagcccc gctcatcttt      1920
     cctcgccaaa acaacattaa ttttggacag tactacccaa aaccaatctt accaaacgta      1980
     ggaccgattc ccattgcagc tcgaactcaa tacatgccac cacctcgacc atttgcagct      2040
     aagccacaac cacggccaga gcctatggac gtagaccgaa gtcttcatac aagacaaatt      2100
     aattacatga acagaccaaa tccaggagaa gcagggaaaa gaccgcctat gccattcgca      2160
     acccaaaatg atgtgaccaa aaaacagcgg cattttaata tcgaaacctc ccagacagac      2220
     acaacttcta atactgacga acaaaaagag acagaggaat cagaaatgtc agcgtacgta      2280
     caaacaatcg caaatcaaga ggaacaagca gactttgaac aatctttaac tgaatactct      2340
     gagataatca acgacaacaa tgagaattac cagtatgact atacttatgt taatttttta      2400
     gaataacaaa ttcctcactt ccatattatg aatgcaagct gaggaatggg aaaattctga      2460
     aaattctaat agacacaggc tcaaatagaa attatattaa accacagtta gtttccaacc      2520
     caacacccaa tgaacaaact tttgacgctg tctcagtagg aggcaacatt cagataactc      2580
     atcataagat ggcttaccta tttgatgacc ccaacgcaat agtcaaattt ttcttattac      2640
     ctactcttaa aacttttgac gcgatattag gaaacgatag cctaaaagag ctaggagcca      2700
     ttatagacac gggaaaaaaa ttaatgtact taaaaagtgg caaaatcatt ccgttaaaag      2760
     aggaaaaatt cgagcaaatt aatgtaataa tacctaatct agatcacctt tcgcctaatc      2820
     aaaaaataga attaaatcgt ttactaaaaa agtaccctaa tctgtttgcc gaaccaaacg      2880
     agaaattaac ttacactact aacgttaaag cggaaatacg tacaaataca gatacaccgg      2940
     tgtattcaaa attttatcag tacccaatgt ctcttaagaa cgaagtcgat aaacaaataa      3000
     ttgaactatt agacaacaac ataatacgcc catctcgatc accctacaat tcacccgtgt      3060
     ggattgtacc aaagaaatta gattcgtcaa atataaaaaa atacagaatg gtaatagact      3120
     atagaaaact aaatagcgta acaatatcag acagataccc tatacctgac attaatggag      3180
     tgttagctca actaggtaac aataaaatat tttcggtact agatttaaaa agcggattcc      3240
     atcaaattct tttaaaagat agtgacattg agaaaacagc attttcagtt aataacggta      3300
     aatacgaatt catgcgtctc ccattcggat taaaaaatgc cccgtctatt tttcaacgcg      3360
     ctctcgacga tattcttaga gaacacatag gcaaaatttg ctacatttat atcgatgata      3420
     taatagtctt tagcaaagat gagctaacac attgcgaaaa tcttgaccaa atatttaaaa      3480
     ctctaaactc agctaatata aaatgtcagt tagataagtg tgatttcttt aaaaccaaag      3540
     tagaattttt aggctttgtt atatccgata agggtataga aaccaatccc aataaagtaa      3600
     aagcaattgc caattaccca tgccccaaaa cgcttaagga acttagatct ttcctagggc      3660
     tatcaggata ttacagaaga ttcataaggg gatatgcctc aatcgccaag ccccttacga      3720
     cattgctcag gggagaagat ggtcgcatat caaaaggagc ttcatccaaa aaattaatac      3780
     aacttgacaa agaagccttg aaagcatttg aacaattaaa aaacgccctg atatctgatg      3840
     aagtaatatt gcattacccc gacttcaata aagaattcac actaacaact gacgcttctg      3900
     attatgcaat aggagcagtc ctttcccaag ccaaccaacc aatagctttc atatccagaa      3960
     ctttgtcaaa aactgaagag agttatgaaa ccgcgcgtaa ggaaatgtta gccatattct      4020
     gggcagtgaa atcctttaac ggatacctat atggtggatc aaaagtaaag atctacacag      4080
     accatgaacc ccttacgcat gattgtaact ggaaaggtag catagccgtt aggagatgga      4140
     aatcttattt ggacgagtac gataaagaat taatttacaa acccggtaaa gaaaatgtag      4200
     tggcggacgc attatcacga ataaaaagtc aaggtgaggt aaattcacta acagcaacac      4260
     agcacagtgg ccaaagttca ggtcacaatc ttatacccag catagaaact cccattaatg      4320
     catttaaaaa ccaaatattt attttaaaag aagaaccacc cgattataag ttcacaatac      4380
     ccttcccaac atttcacaga cacacaattt caaaaccaca tttttcggac agtgacctaa      4440
     tagaactatt aacaaaatat ctcaatccaa cagtcataaa cggaatccaa acatctgaag      4500
     acctaatggg tcaaattcaa aatttatatc caaaacattt ctcgactatt aaaatacgat      4560
     ttacacaatc tagagtaaag gacttaacaa cagaattgga acaggacgaa atcattttag      4620
     aaacccacaa tagagcacat agaaatgctg aagagaataa aattcaaatt tctgaaaaat      4680
     actatttccc caaaatgaaa aataaaatat ccatgctagt taaacaatgt caagtctgca      4740
     aagaaggaaa atatgataga cacccaccta atccagtttt gaaagagacc cccataccag      4800
     aatacccagg acacacaatt cacatcgaca tattctctac cgagaaaaaa ctagtattga      4860
     cagcaataga caaattctca aaattagcac aagcaagagt tatagaatca aaagcaatag      4920
     aacatataaa aaaaccacta aacgacatat tattttatta tggtgttcca aagtttgttg      4980
     tcatggacaa tgagaaatca tttaattctg ccagtatcaa ctttatgatg aaagaccagc      5040
     taggcataga aatttttagg gtccccccat ataaaagtac agtgaatggt caaatagaaa      5100
     gattccattc caccttgtct gaaataatga ggtgtttaaa atcaaaacag gtgtatcaaa      5160
     cattcgaaga actgctcgat agaactattt atgaatacaa ttataccata cattcagtaa      5220
     ccaaacaaag accactagaa gtattttttg gcagaaatgt caccacagat cccgaacaat      5280
     ttgaaaaaag taggcaagat aatattacga gattaagaaa caaacaacaa caggatttgg      5340
     agaaccataa taaaaaacga aaggagatta aaacttatca gccaggacaa gaaatattcg      5400
     ttaaacaaaa tactagacta gggtccaaac tatctaaacg ttataaaaaa gaaatcgtaa      5460
     aacaaaataa tcgtactact attatcacag aaacagggaa aattgttcac aagagtaata      5520
     tcaaaaatga ctaggagtcc gaatattttt ttttaaatgt ccgaaaatgt ccaagagaac      5580
     acctatatcc aaaaaaaaaa aaaaaactaa taaagttgtc cgatttacgg tatgcatccg      5640
     attgtgacga atcggcccat gcccctcaaa aaactaattg taattccact taactctcgt      5700
     tgcaggcttc tcctactaat attttggtta ccaatgataa ccgcaactct tgaaatcaca      5760
     aactatacag atgcacacac tattactatc cataaaggaa tagggaaaat acaatcagca      5820
     tccattaaaa tgattcacct tataaactta aaacaaatag aagaagaact ttttaacatt      5880
     cgagaacaca ccgtaaacga cttaaagaaa agctacttat accacactct tacacatgaa      5940
     ataacccaag cattctctgc attaaacacc cttacattta aaaatcataa caagagatca      6000
     ataaattgga tcggatcagc atggaagtat gttgcaggca atcctgacca tgacgatctt      6060
     gccatgatag agaacaatat taataatctt ataactaaca ataacgaaca aattattata      6120
     aatcaacagc tacagactag aattaatagt ttaactacag tctcgaatat gttaaaaaat      6180
     tcaattagga aagacagttc ttttaataat gaaatagcta caagtcttca aaatcaagtc      6240
     agactattaa aagaagagtt aattaatgtc aaatacgcta tgcaatgggc aagactaaat      6300
     ataataaaca ccctactttt aagtgataca gaactcgatg aagttcatga aacgttcaaa      6360
     agaggtaata ttacctctct ttcagtagaa gaaatgttag aattggttga tgtttcagtt      6420
     ctgcataaca aaacaacaat agcctacatt ataaaaatac cagaactaga accgattaca      6480
     taccaaaaca tacttgtaaa acctgtttta agaaataatt caattatcca tttagaagct      6540
     aacgaaatat ttttgtataa agacatatta ttaaaaacac cagaaaattg taaactatct      6600
     aaaaatataa aaatttgtaa aaaacaaaac attgttaact taagcaaatc taaatgtatc      6660
     acaaaattag ttcagggaaa agcatcgctg tgtgactacg ccaacgcaga gcacatccaa      6720
     agagtcgagg aaattgacaa cagcctaata ctactaaaca actttaatgg aactatacaa      6780
     cacgacaaca caacacaaca attaaatgga acctatctac tgcatttttg gaacgacaca      6840
     atactaatag ataaaaagga attcactaac aaggagaaaa caattataaa acctggaata      6900
     ccgataattc agatgtcccc aatagaagcg gaacggttcc aaatcctatc gttagaatca      6960
     ctacatgccc taaatattaa aaacatagga cacctggaag aaatcaaaac acactctatt      7020
     atgaatcgga ttgcaatcat tacactgata gctacaacga taattttaat aatattgtct      7080
     aaaacattta tacgaaaaaa ggaaaacata acactacaaa ttcaacaaga accacttaaa      7140
     aatttaaata accaaatcaa gaaaactaat atcacaaact caattcagcc agaattcaac      7200
     aatatcccat atttctgaaa cctacttgag gacaagcagg aatttgagga gggag           7255
//
ID   Gypsy-4_DMel-LTR repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   06-AUG-2018 (Rel. 24.06, Created)
DT   06-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-466
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1053-1053 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
SQ   Sequence 466 BP; 170 A; 118 C; 72 G; 106 T; 0 other;
     agttaaataa caaaactatt aacggaacta aataacccaa acatagctga atgcaatacg        60
     atacaaccca aagtcaatgc caccaaagaa gtgtcgcaac tttgtgacac aatttaattt       120
     caatgaccca tgcaatacga tacaacccaa agtcaatgcc accaaagaag tgtcgcaact       180
     ttgtgacaca atttaatttc aataacccaa catccgccga cttcgaacat ccacccgcaa       240
     catcagcggc ttcaaattgc taacgctgca attcgatgcc taaatcttat tggtcagcgc       300
     agccctgccg aacctctgtc gaaccttgcc agcagcgcgg cccaaagtca cagctagcgt       360
     agggacagcc taacaattgt aaaattagtc taaaatcgaa ccttgaataa agaaccacta       420
     ctgtggagtt taaataaacc aaattttagt atttgaaaca ttaact                      466
//
ID   Gypsy-4_DMo-I repbase;    DNA;    INV; 5059 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5059
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           258..1445
FT                 /product="Gypsy-4_DMo-I_1p"
FT                 /translation="MSLTENHNQLPPTGSSTNMLTEGQLNQLLMQLKQIPT
FT                 FEGQEDTLGPFIRRLDYLLALYPTHDLRQQSIIFGATEVLLGIQAQRAVGL
FT                 QGVSNWKSLRAALINEYKPHISFEELLRRLYNTNFQGSLRKFVEELEIKAS
FT                 IIVNKLSLENDEVNNFYYTQAMNETVKNVINKKLPDRMFMILARHDISSIS
FT                 KLKCVAQQEGMYEDNVNLILVQNSRKSNSNINPDRPSNKEINNTKMTSYNN
FT                 SPSQQKTNEIVSNQYLIPHHVRQNTFNQGRPSLPPSLPSPNPQIFKEFQQK
FT                 LVQAQQSDAHRKSSQGYSIPNLTQPQKRQRESTSGHQKMEIDDYHHIEMPI
FT                 DQYYNQSCEYQNNSDEPYCETDHQNLNHPYQQPDEDNAENFRLSASQHTNI
FT                 LP"
FT   CDS           1397..4594
FT                 /product="Gypsy-4_DMo-I_2p"
FT                 /translation="CRKFSFISLPTHQYIALKFNNKLCRCLIDTGSSINIM
FT                 SQNFFNLPITSKPTVVRALQGVVNLNKIITVQPNELFPVEQHFYIFPFSHY
FT                 YDILLGRNFLKATNSIIDYSRDQIIINNKTFSHKLYFPDNNKDFTTTPELT
FT                 YAIENPIDEQPQYRLDHLNKEERANLLKLLKQFIDIQYREGQILSFTNQTK
FT                 HRIETIHNNPVYKKPYSYPFAAEQEIDAQVEEMLQQGIIRESNSSYCSPLW
FT                 VVPKKLDASGNQKYRVVVDYRGLNEITISDKFPIPNIDEILSKLGRCQYFT
FT                 TIDLAKGFHQIEMDPDSITKTAFSTKNGHYEYTRMPFGLKNAPATFQRCMN
FT                 NVLKEVINKCCLVYLDDVIVFSTSLTEHLDSLRKVFSKLREANLKLQLDKC
FT                 EFLKRETKFLGHIIGPYGIKPNEDKIKSIKYFPLPKSPKEIKSFLGLCGYY
FT                 RKFIPNFAQIAKPITNCLKKGNKIDLRNEAYLQAFEKLKILISSDPILVCP
FT                 DFKKLFQITTDASSVAIGAVLSQEGKAICFASRTLNDHEQNYSTIERELLA
FT                 IVWATKYFRPYLFGRTFEVLSDHKPLVWLHSIXDPNMKLQRWKIRLSEYDF
FT                 TIEYIQGKTNYVADALSRIQSQHEEVMLGSTCATVHSAEEDSSFLIPLTEK
FT                 PLNHYSRQVIMVKTDNISVKVEQYFKKQKIIINYKEITFESAKQLLIDHLF
FT                 AKSSALYIESDPDFLIIQKAYKEIVHDQKTSIVRALLYLKDIESYAEFKEL
FT                 ILKQHIKLIHPGIEKMLRLFKESYYFPDSGKLIQNIINQCDVCQLSKTEHR
FT                 NTNAPFELTPEVFNPREIFMIDFYISENKTYLTCIDIYSKFVMLVQVKSRD
FT                 WLEAKRALLQVFTQMGKPITLKADRDSAFTSNAIKQWLTSEEVKLELASTK
FT                 TGVADIERFHKTLNERIRIINTDTYVEEKQMKIETILFIYNHKIKHNSTGR
FT                 TPAHLFIFAGTPAYSNQILKTQKINKVNENRKSFEVNTKYKKAPILKGKLQ
FT                 NPFKKTAKIKAVDEKHFSELNRGREFIHHKNQFMRKKVINDSNYHTRPPEL
FT                 VCMTHTDDN"
XX
SQ   Sequence 5059 BP; 1968 A; 939 C; 775 G; 1376 T; 1 other;
     ggcgcagccg gtaggatacg cgcggtaaac ataaactcta taaagtcatt ttatttgatt        60
     ggtcaaatac tagtaccatc acccaattgt gcggaatcaa taaaagacag tgaaaaagtg       120
     cgtcagttaa gttataatca actgccacaa acatttcaaa caaaaattat tgagtggaaa       180
     ccaccgtatc cgcataagaa cctaatttaa atcgtgagtg aaaatttgac cacgtaacaa       240
     aaaaaaataa ataaattatg tcgctgactg aaaaccataa ccaactacct ccaactggga       300
     gtagcacaaa tatgcttact gaaggccaac tcaatcaatt gttaatgcaa ttaaaacaaa       360
     ttccaacatt cgagggtcaa gaagatactc tggggccgtt tattcgtcga ctggattatc       420
     tacttgctct ctatccaaca catgatctca ggcagcaaag cataatcttt ggagcgacag       480
     aagtgttgct gggtatccaa gcacaaaggg cagtaggact tcaaggtgtc agcaactgga       540
     aatccctaag ggcagcttta atcaatgagt acaaaccgca catatctttt gaggagctgc       600
     ttcgccgtct ctataatact aatttccagg gtagcttgcg taagtttgta gaagagctcg       660
     aaatcaaagc cagcataatt gtaaacaaat tatcattaga aaatgacgaa gtaaacaact       720
     tttattatac acaagctatg aacgaaacag taaaaaatgt aataaataaa aaattgcctg       780
     atcgtatgtt catgatttta gcacgtcatg atatatctag tatttctaag ttaaaatgtg       840
     ttgcccaaca agaaggcatg tatgaagata atgtaaactt aattctcgta caaaatagta       900
     ggaaatcaaa ttcaaatatc aatcctgata ggccttctaa taaagaaata aataatacta       960
     aaatgacttc atacaataac agtccatccc agcaaaaaac taacgaaatt gtcagcaatc      1020
     aatatctcat accgcaccat gtccgacaga acacatttaa tcagggacga ccttctttac      1080
     caccctcttt accatcgcca aatccacaaa tatttaaaga atttcaacag aaactcgtac      1140
     aagctcaaca aagtgatgcc catagaaagt caagtcaagg ttattcgata ccaaatttaa      1200
     ctcaacctca aaagcgccaa cgtgaaagta caagtggcca tcaaaagatg gaaattgatg      1260
     attaccatca tatagaaatg ccgattgatc aatactataa tcaaagttgc gaatatcaaa      1320
     ataatagtga cgaaccttat tgcgaaaccg accatcagaa tcttaatcat ccataccaac      1380
     aaccagatga agataatgcc gaaaattttc gtttatcagc ctcccaacac accaatatat      1440
     tgccttaaaa tttaataata aactctgtcg ttgtctaatt gatacaggta gttcaattaa      1500
     tattatgagc caaaatttct ttaacctacc cataacatca aagcctacag tagttcgtgc      1560
     attgcaagga gtggtgaatt tgaacaaaat aattactgtt caacctaatg aacttttccc      1620
     agtagaacaa catttttaca tatttccatt ttcacactat tatgacatat tattaggacg      1680
     caattttcta aaggcaacta attcaattat cgattattcc agagatcaaa ttataataaa      1740
     caataaaaca ttttctcaca aactttattt tcctgacaac aataaagatt tcacaactac      1800
     tccagagctt acttacgcaa ttgagaatcc aatagacgag caacctcaat accgactcga      1860
     tcacctcaat aaagaagaac gggcaaattt gctgaagctt ttaaaacagt ttattgacat      1920
     tcagtatcgc gaaggccaaa tattaagctt tactaatcaa accaaacata gaattgaaac      1980
     cattcacaat aatcccgttt acaaaaaacc ctacagttat ccgttcgccg ccgagcaaga      2040
     aatagacgct caagttgagg aaatgcttca gcaagggatt atcagggaaa gtaattcatc      2100
     atattgcagc cccttatggg ttgtgcccaa aaaattagac gcttcaggga atcaaaaata      2160
     tcgagttgtc gtcgattatc gaggattgaa cgaaatcact ataagcgata aattccccat      2220
     cccaaatatt gacgaaattc ttagtaagtt aggcaggtgt cagtatttta cgacaatcga      2280
     tcttgcaaaa ggcttccacc agatagaaat ggatccagat tccatcacca aaactgcatt      2340
     ttcaaccaaa aatggacatt atgaatatac acgaatgcca tttgggttga aaaacgcacc      2400
     agcaactttt cagcgttgca tgaataatgt tttgaaagag gtaataaata aatgttgttt      2460
     agtatatctc gatgatgtca ttgtattctc gacatcatta actgaacact tggactcgtt      2520
     gagaaaggtg tttagcaaat taagagaagc caacctaaag ttgcagcttg ataagtgcga      2580
     attccttaaa agggaaacaa agtttttagg tcatattata ggcccatatg gcatcaagcc      2640
     caatgaagat aaaataaaat caattaaata ttttcctctt cccaagagtc caaaagaaat      2700
     aaaatcattt cttggattat gcggctacta taggaaattt atcccaaatt tcgcacaaat      2760
     tgccaaacct attaccaatt gtcttaaaaa aggaaataaa attgatttaa gaaacgaagc      2820
     ttatctccag gcctttgaaa aattaaaaat tctaatttca agtgacccaa tacttgtttg      2880
     ccctgatttc aaaaaattgt ttcaaatcac aactgacgct agtagtgtag caataggtgc      2940
     tgttttgtca caagaaggta aagctatttg tttcgctagt cgaacactaa acgatcacga      3000
     acaaaactat agcaccattg agagggaatt attggccatt gtttgggcaa caaaatactt      3060
     tcggccctat ttatttggta ggactttcga ggtattaagt gatcataagc cgttggtttg      3120
     gcttcactca atacmagatc ccaacatgaa actccaaagg tggaaaattc gcctatcaga      3180
     atacgatttt acaatagaat acatccaagg aaaaaccaat tatgtagccg atgcgctttc      3240
     acgtattcaa tcacaacacg aagaagtaat gttaggaagt acttgtgcaa ctgtacatag      3300
     tgcggaagag gatagttcat tcttaatccc tttaacggaa aagcctctaa atcactactc      3360
     tcgacaagta atcatggtta aaacagataa tatttcagtt aaagtagaac aatatttcaa      3420
     aaaacaaaaa attataataa attataaaga gataactttc gaatctgcaa agcagttatt      3480
     aatagaccac ctttttgcta aatccagtgc actctatatt gaaagcgatc ccgactttct      3540
     catcatccaa aaagcttaca aggagatagt ccatgaccaa aaaacttcca ttgtaagagc      3600
     attattatat ttgaaagata tagaaagtta cgctgaattt aaagaattaa tattaaaaca      3660
     gcatattaag cttatccacc ctggcataga aaaaatgtta agacttttca aagaaagtta      3720
     ttatttccca gattctggta aattgataca aaacattatt aatcaatgcg acgtttgcca      3780
     attgtcgaaa acagaacaca gaaatacaaa cgccccattt gaattaacac cagaagtatt      3840
     caaccctcgc gaaatattta tgatagactt ttatatttca gagaataaaa cttatctaac      3900
     atgtatcgac atttattcaa aatttgtcat gttagtacaa gtgaaaagcc gtgactggct      3960
     ggaagccaaa cgtgcactat tacaagtatt tactcaaatg ggcaagccga taacactcaa      4020
     agcagacaga gactcagctt tcacaagtaa cgcaattaaa caatggttga cttcggagga      4080
     ggttaaatta gaattagcat caacaaagac aggggttgcg gacattgaac gatttcacaa      4140
     aaccttaaac gagcgtatta gaataataaa tactgatact tacgttgaag aaaagcagat      4200
     gaaaatcgaa actatcctat tcatttataa tcataaaatt aaacacaata gcacaggtag      4260
     aacaccagcc catttgttta tttttgcagg tacccctgca tacagtaatc aaatcttaaa      4320
     aacacaaaaa attaataaag tcaacgaaaa tagaaaatct tttgaagtca atacaaaata      4380
     taaaaaagca ccaatattga aaggcaaact tcaaaaccca ttcaagaaaa ctgccaaaat      4440
     taaggctgtt gacgagaaac actttagcga attaaacaga ggaagggagt ttattcatca      4500
     taaaaatcaa tttatgcgta agaaggttat taatgactct aactatcaca ccaggcctcc      4560
     tgaacttgtt tgtatgactc atactgatga caattgattc cacatatccc tactccacat      4620
     atcaataaaa aaaataaata aataaaaaaa aaaaaataaa aatagataaa ataaacccac      4680
     caacattttt gagctattac tatcattaaa acattttgaa caatttattt aacctaacat      4740
     caccttttca gaattgatat ttgaacatct aaaataatcc gaaatattaa tacctaatat      4800
     tagaaaaata gcaaagaata caaaaaaaaa aacaaaaaaa accaaatagc gaaaaaaaac      4860
     gaattgttag tcacactata tttgtactaa gtatgttaat caatattgaa aaaaaaaatc      4920
     ataaatttaa tactaaaaaa gatgaattgt tagaattaag tccacttaat tgttaactaa      4980
     ttcaagatac aaaaaggttg tagaatggta atacttcaag tgtaccgcct gaggacaggc      5040
     tacattctcg ggttggagg                                                   5059
//
ID   Gypsy-4_DMo-LTR repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-376
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 376 BP; 122 A; 78 C; 61 G; 115 T; 0 other;
     agttacgtat tcatcatact ccaacaaatt agagtatttg gtatgcatac ataatttctc        60
     ttataatctc tcttaagcca ctctgtagct taatcttacg actctcaaag ctcgcaagcg       120
     aagttacggc agaatcacgc cacttaaagc atttacaaga aaggtaactg catgatcagg       180
     ccacctagag ctttgtaacg gcaatgtcat ccgatgctgg agctttatag ctgccaacgc       240
     cgacgcattg catagtaagc ttagaattag agttagttgt aaatctgcat cacgagaata       300
     aacttgttca actccaatgc tattaaaata aagttatctt tctatttaac taaccgcatt       360
     gtttaaaaat gtaatt                                                       376
//
ID   Gypsy-4_DPer-I repbase;    DNA;    INV; 3411 BP.
XX
AC   super_55;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DPer_;
KW   Gypsy-4_DPer-LTR; Gypsy-4_DPer-I.
XX
NM   Gypsy-4_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3411
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_55; Positions    4969    8379.
XX
CC   'CAAC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..1680
FT                 /product="Gypsy-4_DPer-I_1p"
FT                 /translation="MGSFVEERGLGPVCAGVRSSIGRHAGRDAPNLQGVDR
FT                 EARRGRGRARSLGDEAATWAQMEDGTDPYERLTLPASAEQATLWRRPSETQ
FT                 EELIASLTVPVKRRSPSRPRAESGERPTRPAQPEQGSARNPHGLEEGRAGE
FT                 DRQQGLDEQTTRPPTSSSAHVAKQVREWSFRFDGTAKPLEFLEQIEWSANM
FT                 YGLDWNLIPRAMPELLKGRALMWFVANNRQCQTWNAFARSFQAYFLPRGYF
FT                 EKLLQVQRWGEPFKDYIVEMQTLMRPLKCTPEEQLQLIRDNSMPDLFIRPH
FT                 RCRDLEHIMTLADEFEALERDRLEFQRECPASKYSVKSRMTADPVLACPNF
FT                 SKTFVLQTDPSDYGLGAILKGGIESPKGRIARWALELQQYDFEVAYRKGQL
FT                 NVVADALSRQPLAERWLRTIEEETESGHEAEAECEWIKKVKERMRTEPMKY
FT                 PDYVEEASQIIPAHPAPSRRRGDSIMEVMRPKGSKRKSHKREQRLAGGGAR
FT                 GRQKDDCKSSRPVLLAGDAPRCEDICEKV"
XX
SQ   Sequence 3411 BP; 943 A; 791 C; 1102 G; 575 T; 0 other;
     actggcgccc aacgtggggc ctcacgacaa gtaaaagaca aagtgcgttt gggaagggcg        60
     gtactgagtt tggtattgcg agggcgcaaa aatgaggagc cggcgatggg ttcattcgtt       120
     gaggaaagag gacttggtcc agtgtgcgcg ggcgtgcggt cttcgattgg aaggcacgct       180
     ggccgagatg cgccgaatct tcaaggcgtg gatagagaag cacggagagg acgcggacgc       240
     gctcgaagcc tgggtgatga agccgcgacc tgggcccaga tggaggacgg gacggatcca       300
     tatgagcgcc tgacgctgcc ggcgagcgcg gagcaggcaa cgctgtggag acggccgtcc       360
     gaaacccaag aggagcttat cgcgagcttg acggtcccgg tgaaaaggcg gtcgcccagc       420
     cgaccacggg cagagagtgg ggagaggcca accaggccag cacagccaga gcaagggagc       480
     gcgagaaacc cacatgggtt ggaagagggg agagcagggg aggatcgtca gcagggactc       540
     gatgaacaga ccacgagacc gcccacttcg agctctgccc acgtcgccaa gcaggtcaga       600
     gagtggtcat tccggttcga cggaacggcg aaaccactcg agttcctgga acaaatcgag       660
     tggtcagcca acatgtacgg tttggattgg aatttaattc cacgagcaat gcctgaactg       720
     ctaaagggtc gggcgctcat gtggtttgta gccaacaaca ggcagtgtca gacgtggaac       780
     gcatttgcgc gtagcttcca agcgtacttc ctgccgaggg ggtattttga aaaattactc       840
     caggtgcaaa ggtggggaga gccattcaaa gactacatag tggagatgca gaccctcatg       900
     cggccactaa aatgcacgcc cgaagagcag ttgcagctca tcagagacaa cagcatgccc       960
     gatttgttca tccggccgca taggtgcaga gacctggagc acatcatgac actggccgac      1020
     gaattcgagg ctctggagag ggaccggctg gagttccagc gggagtgtcc ggcgagtaag      1080
     tactcagtaa agagtcggat gacagcagac ccggtgttgg catgcccgaa tttctcaaag      1140
     acgttcgtgc tccagacgga ccccagcgac tacggactgg gggcgatcct gaaagggggc      1200
     atcgaaagcc caaaggggag gatcgccagg tgggcgctgg agctacaaca atacgacttc      1260
     gaagtggcat ataggaaagg gcagctgaac gtggtggcgg acgcactgtc ccgacagcca      1320
     ttggcggagc gatggctgag aaccatcgag gaggaaacag agagtggaca cgaagctgag      1380
     gcagagtgcg aatggattaa aaaggtcaaa gagaggatga ggacggaacc gatgaaatat      1440
     cctgattacg tggaggaagc aagtcagata ataccggcac atcccgcacc gagccggaga      1500
     agaggagata gcatcatgga agttatgcgt cccaaaggat ctaagagaaa gagtcataaa      1560
     agagaacaac gactcgccgg aggcggggca cgcgggcggc agaaggacga ttgcaagagt      1620
     agccgcccgg tactactggc cggggatgca ccgagatgtg aggacatatg tgagaaagtg      1680
     tgaagtctgc atacgctaca aaccgagtca actgcagacg gccgggaaaa tgctgacgca      1740
     agtgccagag gagccgtggg tgacggtgtg tgccgacttc gtaggccctc tgtccaggtc      1800
     aaagcatggg aatgccatgt tattggtgat ggtggatcgg ttctcgaaat ggaccgaatc      1860
     ggtccccttg agaaaggcca ctgcggaagc actaacaaaa gcgttccgag agcgcatcgt      1920
     gtcccggttt ggcgtgccaa aggtggtgat cacggataat ggagtccagt tcaccagtag      1980
     agtttttaag aggtttttgg agcagatggg cgtacggcat cagttcacgg ccccttacac      2040
     gccgcaagag aacccgacgg agcgaactaa ccggacagtg aaaactatga tagctcagtt      2100
     caccgaaggg aaccagagga actgggatga gaaatggtca gagataatgt tggccgtaag      2160
     ttaaggggtg accgagtcca ccgggtactc gccggcgttt attgtctttt attcttttct      2220
     tttagtattg tcttttattt atagagccaa ggctaccaaa cgctctatac gatgaagaag      2280
     tgcttggcac agggcagggc acgcccacac cggacgagaa cgcggccaag ttgagagaat      2340
     tatttcaatt tcaattattt cagtggcagt gtgctctccg gtgcagcgct gtggagcaga      2400
     gggagatggc gcgtctgcgt aaggagacgg aggaggcgat ggcgaagcgg acggagagcg      2460
     cggcagacgg tccgaggtcg gagcgaggtc cctggcaatg gccggaaccc ggcccgagct      2520
     gcagcgtcag gcatcgtgcc cccagacggg gccggcggac aacccacggt ggcagcacat      2580
     caaacgcgag gagtggccga ccgtcgtaac gcgctctctc gcgcggatga ggcaaacgtc      2640
     gatgagggtg aagcgcctgg tcaacgacgg tggcgtccgg taccgtctat cggtgtccac      2700
     cgatcggcag gaggtgttcc gggcaacaca ctgaatagaa gagaagagta gaaagaatta      2760
     gaaacaaaaa cgaataaaaa aaaaaataaa gaagaagacc ttggtattta cctttcagca      2820
     gaagaacaga ggggcatcgc tagaaataat cggtaaagta tgaatgaatg cggcggaagg      2880
     cgtgaaagag agaggaaaac ttatccgaag catctagagg gccgccggaa ggcctgcgca      2940
     ccagcgaagg gcagaaaggg aaaccgggca cgcacaagaa aaaaaaaaaa aaaaaccagg      3000
     aacaacgaga agatagcact tttctcagtc cattgaggaa ttcgcgatgc ggaattagaa      3060
     tacgcacgct gcgagatatg gagtatatca caaaagcgcc cctatgcttt atcgagtgag      3120
     tcgtaaaggc aactctacgc catatcgagt aggtcagaat agcgacccta ccctatatcg      3180
     agcggatcac aagagctcct atgcgaacta tcgacaaggt gaaaacgaat cgatcgctca      3240
     cattggagag atacggcaac accgcactgg gcgaggccga ggaagggcgc cagggtgcac      3300
     ccggttcggg aacaaagcgc gcgcgcgccg ttcgcgcggg ttttttttta aacgtcccaa      3360
     acatgggacg cggaaaatcg gggttttctg ccaatgaaag aaagggggaa g               3411
//
ID   Gypsy-4_DPer-LTR repbase;    DNA;    INV; 909 BP.
XX
AC   super_55;
XX
DT   04-MAR-2011 (Rel. 16.03, Created)
DT   04-MAR-2011 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DPer_;
KW   Gypsy-4_DPer-LTR; Gypsy-4_DPer-I.
XX
NM   Gypsy-4_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-909
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (22-MAR-2010).
XX
DR   Genome; super_55; Positions    4060    4968.
XX
SQ   Sequence 909 BP; 253 A; 226 C; 294 G; 136 T; 0 other;
     tgtgaggaaa ggtattccca cacgcagggg gcggtacagg gttaagagct atcggccgtt        60
     atccggggat atccggaggc ggcgaattcc cgaggagagc tctcccggag acccaagatg       120
     agagcggagg cccccggaga gagaacagcg ggatgacggg atcgggccgg cagtggccca       180
     gcgcatccgg tcaggtcccg ttgtaaagcg agcagagaat gaaggaaaca ccgatggaaa       240
     gtacgggcac cgcatggcgg aaagtgccgt tagcgccagg cggcgccgac gcagaagcga       300
     tcctataaga gggggccgcg tccaggaaaa gggacagtca gcgagcggag ctatcgagtg       360
     tgaagtgaat agtgagcaac aagagaccga gcaaagggca aagaactttg gaatgaacgc       420
     gttgtgtgag gattgagagg tggactcgag catacagcca agagccaaat ttcccaatcc       480
     cttgaaccaa cggtgccacg cttggagtgc atcccacagg gagtgagaca ccttcgggcc       540
     gaaaagccaa gtgagtcgag tgagagcgaa cgcgtcaggc gccgactgag aggcggattt       600
     gggcctcgtg ccaagaatcg ctggccccag tcagtagagc cggcggtgcc acgcttggag       660
     acgccttggg gggtccaggg taagtcacgc tcaccaaaaa cgcagaggag aaccaacggt       720
     agaaccagca ccggagtcgg aatagcgtaa gatagctcta agataccaat aaagcgcaat       780
     tgtcataaca gtacaaaacc caacccgtgc cttcttactt gtcgtcgtgg caacatacaa       840
     atattgttgc agcgagccca ccgaccgctg agtccagctg aatcagacgg aaaagaacgg       900
     ttcgttaca                                                               909
//
ID   Gypsy-4_DRh-I repbase;    DNA;    INV; 6232 BP.
XX
AC   AFPP01031139;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DRh_;
KW   Gypsy-4_DRh-LTR; Gypsy-4_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6232
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01031139; Positions    7072     841.
XX
CC   Positions [3842-4315] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2105..4606
FT                 /product="Gypsy-4_DRh-I_2p"
FT                 /translation="MNEMIEQGIIRKSKSPYCSPIWMVPKKVDASGKPKFR
FT                 VVIDYRSLGRCQYFTTIDLAKGFHQIQMDPKSITKTAFSTKNGHYEYTRMP
FT                 FGLKNAPATFQRCMNSLLEELIYTYCLDYIDDIIIFSTSLEEHILSLRKVF
FT                 GKLRDANLKLQLDKCEFMKKETEFLGHVVTTTGIKPNPKKISAIINFPIPK
FT                 TPKEIKSFLGLCGFYRKFIPNFANVVKPMTMKLKKGATINIKERSYIDAFK
FT                 KMKVLITSDPILIYPDFDKTFSLTTDASNIAIGAILSQNHKPICYASRTLN
FT                 EHEINYSTIEKELLAIVWATKYFKSYLYGRPFEILSDHKPLVWLNNIKEPN
FT                 MKLQRWKIKLNEFDYQIKYLPGKENYVAGALSRVKIEENMFEDITEENLLG
FT                 EYANSIDATVHSANEDNQNYISITERPINYYSRQIDFIKENEVLRDVQHYF
FT                 HKLKIKITYTDMTNTFAKDIIKEYLCTKKSAVYFHDDSDFLIFQQAYLEII
FT                 SPNHLTKGVRCTKRLEDILTYANFKEKILKKHKELLHPGIEKTINWFREEY
FT                 YFPDYQKLIQNIINVCEICNIAKTEHRNTNLSFKTTPEIQNLREKFVIDFY
FT                 MVGNQQFLSCIDIYSKFATLVEVTSKDWLEAKRAIIKVFNEMGKPQEIKAD
FT                 KDSAFMCVALHNWLNSEGVQIQVTTSKNGISDIERFHKTVNEKLRIIGSDT
FT                 DIENRYTKFELILYTYNHKTKHNTTNRIPADIFLYAGSPEYNTQERKAKRI
FT                 DRLNEKRHDFEIDTRFKQSPLVKSKTTNLFKKTGNLRQIDEKHFEETNRGR
FT                 KITHYKSKFKKKKNNKSKYDNSREAERNQQSV"
XX
SQ   Sequence 6232 BP; 2577 A; 1021 C; 980 G; 1654 T; 0 other;
     tttaattggc gcagccggta ggatttcaag tgaaagttaa acgtcggttt taaactggtc        60
     ttagggattg tactacacaa ctagtatatc ctgactagta agaaaaaaaa tcgtcgaaca       120
     cacaagtaaa atccgccaaa gaacttatgt gcgaatcgtc gtgcgcagac tagtgaaaaa       180
     tccaattcgg tcaataccac taaaaattaa ataatttaaa gtgaaatatt gagaaacaca       240
     taaaacataa aaaaaatcca attcagtcaa taccacgaaa aaattaaata atttaaaagt       300
     gaaatattga aactttgaca aaaccaaaaa tggcaacccc aatccaatta tcggaacttc       360
     atttgaatca attaattggt caagtaaaag agttgcctat tttgatggca atcccgccga       420
     cctaggtggt tacatcgggc gtgtcgaata cctgttacaa ttatacccga cccaagatgg       480
     ccggcaaata catatcatct atggagccat cgaaaggacc atcgtagacg gcgccaaagc       540
     cgtaatttca gatgaaaaaa ctatgaattg gccatctaca aaagcagccc taatccgagc       600
     gttcaaggac cacagaccat acgaggacct tatagcactc atctacagga caaattatag       660
     aggaagcatc agtaagtttg tagatgaact aagaaagaaa tcatcaactg ttataaataa       720
     gttagattta gaaattgacc aaacagataa aaccatttat acggcatcat taaacaaaat       780
     cattacgaaa tgcatagaaa aaaaccttcc tgatagattg tataatgctt tatcaaaaag       840
     agatatttcc acaattaaca atttaaaaga aacagcaatg gtattaggac actgggatgc       900
     ggatcccttt gagaactata gatcggtgca ttacgataat cgcaggaatt cgggaaatac       960
     ccaccaaaat tattatcatc aaaagaataa ttcaaattat tacccaagac acagtaataa      1020
     ttttaacagt cattcaaatt caaatttaaa taattcaaca gttcctcagt cctcagcgaa      1080
     tcaaaatcgc tattatcaag aatttagaaa ttctctagct caaggcagat cccaaaatcc      1140
     attaaattac caagcgtcaa catcaaataa ttccccaaat gctcctgtaa aaagacaaag      1200
     agaaagtgag agcacacaga ataggatgga cgtaaatttt cagcaaatag cctcggagcc      1260
     agaaaattct acccatatat cagagtaatc attaaaggta aacttcttaa agccatggtt      1320
     gacacggggt catctattaa tataatgaaa gaaaattttg ggaactttga agtcaatgat      1380
     gaaaattgaa aagtttatac tataaaccaa gtaaaatttg cccaatagaa caaaaatttt      1440
     acttacataa attttcagac aattatgatg ttctaatggg aagagattat cttaaaaact      1500
     gcaaagctaa aattaatttt aaagatggaa cggtaacttt aggtgaagat aaacttataa      1560
     ttatgtatgg tgatgatgat caaaaggata agaccgcagt aaaatgcctt aatcctatat      1620
     catcggagaa gaaatgtgaa aaggataaga ccgctgtaaa acgccttaat cctatatcat      1680
     cagagaagaa aggtgaaaag gataagaccg ctgtaaaacg ccttaatccc aaatcaccaa      1740
     agaaagaaag tgaaaaggat aagacccccg taaaaagcct taatcccaaa tcaccaaaga      1800
     aaaagaagag gatgagaccg caataaaatg cctcaatcca gcctcatctg gggatcaatc      1860
     ttttaacttc gctgttgaaa atgaaattcg tgaatgcaac gaattcagat tagaacattt      1920
     aaacgaagag gaaaaagaat gctcgaaaag ggttttaaag ataaaagata ttcagtacaa      1980
     agaaggcgaa aatttgactt tcacaagtac tatcaaacat tctatccaaa ccaaacatga      2040
     ggaccctatt tataagaaac cttataagta ccctcaatca tttgatgagg aagtcaacaa      2100
     acaaatgaac gaaatgatag aacagggaat aattcgtaaa tcgaaatctc cttactgttc      2160
     acctatctgg atggttccca aaaaagttga cgcttcggga aaaccaaagt tcagggtagt      2220
     aatagactac agaagtttgg gaagatgtca atatttcacg acaattgatt tagctaaagg      2280
     atttcatcaa attcaaatgg accctaaatc aattaccaaa acagcatttt ctacaaagaa      2340
     tggtcattac gaatacacac gtatgccatt cggacttaaa aacgcccctg ctactttcca      2400
     aagatgtatg aacagtttac tagaagaatt aatttataca tattgtttag attacataga      2460
     tgatataata attttttcca cttcattgga agaacatatt ttatcattga gaaaagtatt      2520
     tggaaagcta cgcgatgcaa atttaaaatt acaattagat aaatgcgaat tcatgaaaaa      2580
     agaaacagaa tttctaggtc atgtagttac caccacaggt ataaaaccaa acccaaaaaa      2640
     gattagtgcc attataaatt ttcctatacc aaaaactcca aaggagataa aatcattttt      2700
     aggactatgt ggattttata ggaaatttat accaaacttt gcaaatgtag ttaaacctat      2760
     gaccatgaaa ttgaaaaaag gtgccacgat aaacattaaa gaaagatcat acattgatgc      2820
     atttaaaaaa atgaaagtct taattacttc cgaccctata ttaatttatc ctgattttga      2880
     taaaacattc tctttaacca cagatgctag caacatagct ataggagcaa tcctatcaca      2940
     aaaccataag ccaatatgct atgctagccg gacattaaat gaacatgaaa ttaattattc      3000
     aacaatagaa aaagaacttt tagcaattgt atgggctacg aaatatttca aatcatatct      3060
     ctacggcaga ccttttgaga tcttaagtga tcataaacct ttagtttggc taaacaatat      3120
     caaagaacca aatatgaaac tacaaagatg gaaaattaaa ttaaatgaat ttgactatca      3180
     aataaaatat ttaccaggaa aagaaaacta tgttgccggc gcactatcgc gggttaaaat      3240
     agaagaaaac atgttcgaag acatcactga agaaaattta ttaggagaat atgccaatag      3300
     tatagatgca acggtgcata gcgcaaatga agataatcag aactatattt caataacaga      3360
     acgaccaatc aattattatt cccgacaaat agattttatc aaagaaaatg aagtactcag      3420
     agacgtacaa cactattttc ataaattaaa aatcaaaatt acttatacag atatgacaaa      3480
     tacttttgcg aaagatatca tcaaagaata tttgtgtaca aaaaagagcg cagtatattt      3540
     tcatgatgac tcagattttc ttatattcca acaagcttat ctagaaataa taagtcccaa      3600
     tcatttaaca aaaggagtga gatgtaccaa aagactagaa gacatcctca cgtatgcaaa      3660
     cttcaaagaa aaaatattaa agaaacacaa agaattgcta catccaggaa tcgagaaaac      3720
     tattaattgg tttagagaag aatattattt cccagactat cagaaactaa tacaaaatat      3780
     tattaacgta tgtgaaatct gtaacatcgc caaaacggaa cataggaaca cgaatttatc      3840
     tttcaaaact accccagaaa tacaaaattt aagagaaaaa tttgtcatag atttttatat      3900
     ggtaggaaac cagcaattct tgtcatgcat tgatatatac tcaaagttcg ccactcttgt      3960
     tgaagttaca agtaaagatt ggttagaagc taaaagggcc ataataaaag tattcaatga      4020
     aatgggaaaa ccacaagaaa ttaaagcaga taaagattcg gcatttatgt gtgtagctct      4080
     acataattgg ttaaattcag aaggcgtcca aattcaagtt actacaagta aaaacggtat      4140
     atcagatata gaaaggtttc acaaaacagt taatgaaaaa ttaagaataa taggaagcga      4200
     cacagacatc gaaaataggt atactaaatt tgaattaatt ctttatactt ataaccataa      4260
     aactaaacat aatacaacaa atagaatacc agctgacata tttttgtatg caggaagtcc      4320
     cgagtataac acacaagaaa gaaaagcgaa gaggatcgac agactaaatg agaaacgaca      4380
     tgattttgaa atagatacac gatttaaaca atcaccacta gtaaaatcaa aaactacaaa      4440
     cctatttaag aaaacaggga atttgaggca gatagatgaa aaacattttg aagaaacaaa      4500
     tagaggcagg aaaataactc attataaatc taaatttaaa aagaagaaaa ataataaaag      4560
     caaatatgac aattccaggg aagctgaacg gaatcaacaa tccgtttaaa atcatcattt      4620
     tcgcaattat actagtaacc ataactaaaa tggcagtggg acaaagcatc gaaataaacc      4680
     caattaaagc tcaaaacgga taccttgtat tcaaaaccgg atctattgat attccaacaa      4740
     atttcgaata tcattattta agcataaacg aaacaaaaaa gggaaaaaaa ttttaaagtc      4800
     ttataaagga agccaacgaa tttaataaca ttatacaaat tcgttattta gctgataaac      4860
     tcaaaagaga aataaatggc attaaattgg ccaaacgtaa taaacgagga ttatttaaca      4920
     ttattggcaa aacttacaaa tatttgtttg gaacattaga tcaagatgat agggaagagt      4980
     tagaacaaaa aatagataac ttatcagaaa atagtataca aaatacagat ttaaacatga      5040
     ttattgattt atgttggttt tgtatcgacc ttgtaaacaa taattgtagt gttattgaat      5100
     tactcgaggt catacgttgg ttatatttta atttattcta taacgcaacg atttattcca      5160
     cttaactttc atcactcccc agggagtgta agtgtaacac tacaattatt gtttacaagg      5220
     tcgatacaaa accaacataa acaaaaggga tccactcgcc ctaaattcag caattaaaaa      5280
     caatcttcaa ctatttgttg tatttaccag tctgcatatc gaaaaaaccg aggggttttt      5340
     caacagacaa aacactgaaa actttcacac actgatagaa gctttaacga cagaactcca      5400
     cctatgttaa aaccaatgaa ctttggcaac tcaccattgc caaaaagctt atctgatcgt      5460
     aacattgggg agtttctgac gctctgcttc catccccgta gatagctgat gagtctgagg      5520
     tgacgtgcag acgaaactag ctagtcctat catagtcggg ttcactcccc agggagtgta      5580
     agtgggatga aagttaagtg gaataaatcg ttgcgttata gaagaaatta aaatataacc      5640
     aacgtatgac ctcgagtaat tcaataacac tacaatcatg attattgatg taataaataa      5700
     tggtatcgaa gtaattaata agttaaaaga agatgacgaa agagaagaac aagctagtgt      5760
     cgtaatattt aatttacaac actttgaaga tattgagcta ggaatgcagt tgacacgact      5820
     tggtatattt aattattaaa acatgatgat ttaactaaaa taagttctga gaaattgttg      5880
     aaaattaaaa cttccacttg gcttaaaaca gacacaaatg aaattttaat aatttcccac      5940
     attcctacag atatcattaa agcaccaatt tttaaaataa ttccgtatcc agatgataat      6000
     aataccattc tgacagaaaa catatttaaa aagtatgcat tttattgtat ctattctata      6060
     agttcaaaaa tataccatga aaattaattg taaaatatgt aaaaccaaag gaagaaacac      6120
     cgaaaaacct agaaaatgta aacgatcaac ctactgtaaa catagaagaa aatatttcat      6180
     tatatccaaa tttatcgtcc tgaggacagg ccaaattcaa aggttggggg ag              6232
//
ID   Gypsy-4_DRh-LTR repbase;    DNA;    INV; 491 BP.
XX
AC   AFPP01031139;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DRh_;
KW   Gypsy-4_DRh-I; Gypsy-4_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-491
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01031139; Positions     840     350.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 491 BP; 189 A; 112 C; 73 G; 117 T; 0 other;
     tgacatatcc atagcaccac aaacctctat gcacatgtct acacacccac acatacatac        60
     acacccacac attactttaa gacaccctca gagaaatcga aacctaattg tcaacaaacc       120
     atggaaaatt tccatgttat taaaaactcc accccaatag actaaacaat ttaaatgagc       180
     cgctgacctg actatcggcc ctttcccacg actcaggata ctcagatttc tggaccgaag       240
     tcataaacaa gatgagaaca aagaacggtc caaagtacaa ttatgaatgt cactcaataa       300
     acactaaagc cactcattag aaagctccaa agctcagaac cgaggtttga tcgtagaaga       360
     agtaggagtt agagaacgag ttcagtttga gtcctaaaac agttaggacg gtgttcttcc       420
     aaataaccat tgtactagtt aataaataaa aaaaataaag ttttttttat gtaaaactta       480
     tggtgcaaac a                                                            491
//
ID   Gypsy-4_DSe-I repbase;    DNA;    INV; 3480 BP.
XX
AC   AAKO01001526;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DSe_;
KW   Gypsy-4_DSe-LTR; Gypsy-4_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3480
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01001526; Positions   13532   17011.
XX
CC   Positions [730-1155] - Reverse transcriptase
CC   'TATA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..1974
FT                 /product="Gypsy-4_DSe-I_1p"
FT                 /translation="MEIIKNMQTPKSSATDEKGKSGIVRSSTGESVPFCFD
FT                 YGAECSLVKESVADKFSGKRINNIVKLNGICNDSICSTQQLLCNINIDQCY
FT                 FEILLHVIMDKYLKYDVLIGREILGQGFGVTMNADKFQIYITKRVESLVTI
FT                 NYEEVIESNRELDDLDKAALKKILKCFSDWFIDGIPKTRVTTGQLEIRLID
FT                 QQKTVQRRPYSPSEEEKSKVRGKVDELLKAKIIRPSCSPFASPMMLVKKKN
FT                 GTDRLCVDYRMLNDNTVADKYPLPLISDQIARLRGVKYFSCIDMASGFYQI
FT                 PVHEDSIERTAFVTPEGQYEFLTMPFGLKNAPSVFQRAIMNALGDLTYTYA
FT                 IVYIDDVLLTSKKNTDFVWLPVHEQVRIKIITILTQTPVLIIFDPQYPIEL
FT                 HTDASCVGYGAILLHKIDNKPNVVEYYSKCTSPAESKYHSYELETLAVVNA
FT                 IKHFRHYLQGRKFVVYTDCNSLKASRTKLDLTPRVHRWWAFLQAFDFEIEY
FT                 RKGERMAHVDFLSRNRVLEQQKGTNKISEFRINLTELSDNWLVSEQQRDTE
FT                 IQVIIVKLRNNKLPGNLDKTYELRKGILHRKIQRNSKTKCLPIIPRGFRWA
FT                 VINHVHESIMHLGWEKTLDKVQSSKICLNMCVDS"
XX
SQ   Sequence 3480 BP; 1225 A; 559 C; 740 G; 956 T; 0 other;
     tcagaagtgg gatccgcttt gcctacaaat atcaccgatg catacctgac agcattgcaa        60
     gtgcaaaact acaacctaat ggagatcatc aaaaatatgc agacaccaaa gtcatcagca       120
     actgatgaaa agggaaaatc aggaatagta agaagttcaa ccggtgagtc tgttccattt       180
     tgcttcgact atggcgctga atgttccttg gttaaggaaa gcgttgccga taaatttagt       240
     ggcaaaagaa ttaataacat tgtaaaattg aacggcatat gtaatgattc aatatgtagc       300
     actcaacaac tattatgtaa tataaatatt gatcaatgtt attttgagat tttgttacat       360
     gttattatgg ataagtattt gaaatatgac gtactaattg gtcgtgaaat tttaggccag       420
     ggctttggcg taaccatgaa cgctgacaaa tttcaaattt acataaccaa aagagtagaa       480
     tcgttagtaa ctatcaatta tgaagaagta atagaatcaa atcgtgaact tgatgatctt       540
     gataaggcag ccttgaaaaa aattctaaaa tgtttttcag attggtttat cgatggaata       600
     ccaaagacta gggtcaccac agggcagttg gaaattagat taatagatca gcaaaagaca       660
     gtacaacggc ggccatatag ccctagtgaa gaagagaaaa gcaaagtgcg gggtaaagtt       720
     gatgaattac taaaagctaa gattattcgg ccaagctgtt cacctttcgc tagtcccatg       780
     atgctagtca aaaaaaagaa tggcaccgat cgactgtgtg tggactatcg catgctaaat       840
     gataacacag tggctgacaa gtatccattg cccctcatct cagaccaaat tgctaggctt       900
     cggggtgtaa aatatttttc gtgcatagat atggcaagcg gcttttatca aattccagtc       960
     catgaggact caattgagcg aacagcgttt gtaacgccag agggtcaata cgagttcttg      1020
     acaatgccgt ttggtttgaa aaacgcacca tctgttttcc agcgggctat aatgaatgcc      1080
     ctaggagatt taacttacac ctatgcaatt gtgtatattg atgatgttct tctcacatct      1140
     aagaaaaaca ctgactttgt gtggttacca gtgcatgaac aggtgcgaat aaaaataata      1200
     accatattga cccagacgcc cgttttaatc atattcgatc cgcaataccc aatagagctg      1260
     catactgacg caagttgtgt tgggtatgga gcgatcctgt tacataaaat tgacaacaaa      1320
     cctaatgttg tagagtatta cagtaagtgt acgtctcccg ccgaatctaa ataccattca      1380
     tacgaactgg agacgttagc agtggtaaat gctataaaac acttccggca ttatttgcag      1440
     ggacgtaaat ttgtagtata cactgactgt aattctttaa aggccagccg tacaaaacta      1500
     gatttaacac cgagggtgca tagatggtgg gcgtttttac aggcattcga tttcgaaata      1560
     gagtatagaa aaggcgagcg aatggcgcat gtggattttc tctctcgaaa tcgagtgctt      1620
     gaacaacaga aaggtacgaa taagatttca gagtttcgaa tcaatttgac cgagttatct      1680
     gataactggt tggtttcaga acaacagcga gatactgaga tacaggttat aattgtaaag      1740
     ttaaggaata ataagttacc aggaaatctg gataaaacat atgaattgcg aaagggaata      1800
     ttacatagga aaattcagcg aaacagtaag accaaatgtt tgccgataat accaaggggc      1860
     tttcgatggg ccgtcataaa tcacgtccat gaatccatta tgcatcttgg atgggaaaag      1920
     acgctggaca aagttcaaag ttcaaaaata tgcctaaata tgtgcgtaga ttcgtagaaa      1980
     attgcattac ttgtaaagtt tctaagccac tagcgggaaa agtgcaggct gagctgcatc      2040
     caatccctaa aatagaaata ccatggcata cgatacatat tgacatcaca ggcaaattga      2100
     gtggcaaaaa tgatttgaag gaatatgtca tcgtccttat agatgccttc accaagtttg      2160
     tttattttca tcacacacta aatatagatt ctgatagctg cattaaggct gtaaaatcag      2220
     ccgtgtcctc gtttggttta cccactcgaa ttatagcaga tcaaggacgt agtttcgcaa      2280
     gtaaaagctt tcgcgatttt tgctcctctc aaaaattaat ctacatttaa ttgctacggg      2340
     tgcaagtaga gcaaacggtc aggtagaatg tgtcatgagt accctgaaag gtatgctaac      2400
     ggctgtagag tctagtcaga gatcatggca ggatgcgttg gctgaagtgc agctagcaat      2460
     gaattgcacg attaatcgtg tgactaaatg tagccctttg gaattattga ttggcaaaga      2520
     agctcgacct tttggcctgt tgccgctaaa cgaagataac gatgatgagg tagacagaga      2580
     aaatttgaga aaggaggcta aaaagaacat gaaaactcaa gccgaatacg ataaaaatag      2640
     gtttgataaa aataaggcta agatagtaca tttcaaagtg agtgatcacg ttttgctcaa      2700
     aagcgaagaa cgtcatcaaa ttaaactcga tcctaaattt aaaggaccat ttaagataat      2760
     tgaagtattg gatggagata gatatacgct aaaatcttta acatgtaaac gaacatataa      2820
     gtattctcat gaatgtttaa gagcaatacc aaacaatcag atacacgatg agttatgtaa      2880
     agacaggggc agcacaatag gagttgtgtc tgttgcccaa tagagaaact gaagaccgca      2940
     ccatagcaga agagacttgt tatggcgggg gtcgtttgtg taaaaggaac tacacaaaac      3000
     ataagttcag tttgtgtaaa aggaactaca caaaatataa gttcagtttg tgtaaaagga      3060
     actacacaaa atataagttc agtttgtgta aaaggaacta cacaaaatat aagttcagtt      3120
     tgtgtaaaag gaactacaca aaatataagt taattaagtg taaaaggaac tacactaaag      3180
     ataagttaat tatttgtaaa aggaactaca aaatttgttt gatttgaaag attaagagaa      3240
     aaatgtgtta aaggaattac acgagtggta tgatttgtta aatttgagtt gtgttacgaa      3300
     aatttaagta agttagtaat gttatgataa gactaaagtt gaaactaatt tgaatcagaa      3360
     atggattgaa tggaaataat tctttgaaat atccagagag tctttgaatc ctgaagtgtt      3420
     atcacttatg tggtagattt aagacaacac tcgaggacgt gtattatgtc aggaaggccg      3480
//
ID   Gypsy-4_DSe-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   AAKO01001526;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DSe_;
KW   Gypsy-4_DSe-I; Gypsy-4_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-362
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01001526; Positions   13170   13531.
XX
SQ   Sequence 362 BP; 97 A; 76 C; 95 G; 94 T; 0 other;
     tgtcgcatta cgaatgtatt ttgaccactg tacgtgtctg tcgtattatt agcatggttt        60
     gaccactgtg cttgcaagac gcagctgcgc aatgagttcg atatattgag aggtcattct       120
     tagaatttga ctacaacgta gaatatgact ggcgcctaag taccgttacg agtgaggcga       180
     cagcgtcgtc gcgctgtcgc caagtgtagt ccagctagcg tgtgtaaagg atagatcgat       240
     gcgtagaaaa tgagatcagt tgaatacaga cgatcacgca cgccggttgt aattcgcttc       300
     gctcggaaag tttagttgcc aacatggaag gtcaggccca aataaatgcc aacgctgcga       360
     ca                                                                      362
//
ID   Gypsy-4_DSer-I repbase;    DNA;    INV; 5930 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5930
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1980-1980 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..2582
FT                 /product="Gypsy-4_DSer-I_1p"
FT                 /note="RING_Ubox and gag."
FT                 /translation="MGLDRSPERGAESSPSYNCPICKADINTAEVFVTSCQ
FT                 HEFHKRCIEAHWKDSAQCPVCKVSCRPAISKSIEGSDRQTRSGSKKRQPLD
FT                 TVSQQALDNTASTSGQSSQTNTSGVNNSSVLTANAITLLAMERRLLATLSE
FT                 RMTDLIQNSVTDCITRALANSSRGMDSAQSEHSSQRSLGNDDVRGGSRDES
FT                 RSESRQVLLAPGSPASQRSTSSDLVNRPDKVVHILNGWKIKFSGTGVSVDN
FT                 FIYRVDTLTRETLGNNFSLLCKHASVLFEGKANEFYWRYHKAHGEINWDSF
FT                 CSALRLQFRQSRDDGDIEELVRNTKQKPNESFDCFYDTITALVDQLEHPWT
FT                 SNKLIRVLRNNLRPEIRHEILNIQINSVSELREICRRREAFLADVKRSSGY
FT                 ARSTPFRREVSEFGQEYEAQIDSEPETDGDVEAFSLLCWNCRKEGHRYQDC
FT                 VSERRVFCYGCGAANTYKPSCSKCSKNSKAGMSRSQFRQKTSSASRNQATM
FT                 TEE"
FT   CDS           2489..5854
FT                 /product="Gypsy-4_DSer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="VFKKLQSRHVEVAIQTEDFECLPEPSHDDRRIEDAAN
FT                 VAQLPFPDIQQLPASPLLHSKISDLREIILPEDNFKLQDVQQHRSRNSTRI
FT                 KSFWQNVKQCRIGIEYISSLPTGPKDPRPFLPINMLGRVVYGLLDSGASIS
FT                 CVGGNLAREVISQGDYKAINSNATTADGRSQQILGYFKADVEYADVKKLLK
FT                 IYIVPSLKQDLYLGIDFWKLYDLLPRNLFISELDATETDCKDKADQHQLSE
FT                 INKAKLANVVNCFPSFSQEGLGRTNLISHSIDVGNAKPIKQRHFPVSPAVE
FT                 KAMYAEIDRMLQLGVIEESDSAWSSPIVMVTKPGKVRICLDCRKVNSFTEK
FT                 DAYPLPQISGILSRLPKAEYITSLDLKDAYWQVPLDVASRDKTAFTVPGRP
FT                 LYQFKVMPFGLCNATSTMSRLMDKIVPAHLRNEVFIYLDDLLVVSSSFERH
FT                 LEVLREVALHLRRAGLTINIGKSHFCMLRVRYLGHIIGDGGIRTDPDKVAA
FT                 IRNFPLPTTLRSLRSFMGLCGWYRKFVPNFASLSAPLTDLMTTKRRFSLTE
FT                 AAIKSFEELKQCLSEAPVLCSPDFSKPFAIHCDASKTGVGAVLVQVSEEGD
FT                 ERPIAFISKKLNKAQRNYTVTEQECLAAIVALKSFRAYVEGHKFKIITDHA
FT                 SLKWLMSNHDLNSRLARWALALQRYNFEIEHRKGSLNVVPDSLSRVNEDVI
FT                 AAIDLREGFLVDLNSDHFKSEEYTQLVQKVSGNQANFPDLRADSGYVYRKA
FT                 EHLTGEQVHDEYAWKLWVPKELVPEILSRAHDSSLSAHGGIHKTIERVRRY
FT                 YFWPGLVADVKAYINACEVCKTTKAPNYVLRPPLGKAPESQRFFQRLFIDF
FT                 LGPYPRSRGGNIGIFIVLDHFSKYVFLKPVRKIDSSVVIKYLEGDLFMSFG
FT                 TPETIVSDNGSQFRSHAFQKLMQQYTVTHTLTAVHSPQANASERVNRSVIA
FT                 AIRAYLRPDQKDWDEHLNRISCALRSSVHSSLGTTPYYMVFGQHMVNSGST
FT                 YSLLRKLNLLDDRSLKLSRQDSFDVVREKACKRMLEKHSENEKKYNLRSRV
FT                 VSYAVGQEVFRRNFKQSSFQTGYNAKFGPSFVKARVRKKLGSAYYELEDLQ
FT                 GKPVGTYHAKDIRQ"
XX
SQ   Sequence 5930 BP; 1737 A; 1150 C; 1318 G; 1725 T; 0 other;
     gttataattc attattatta ttaagaaaag tggcgcccaa acgtgtggag ccttagtaaa        60
     aaaattattt ttttattaag actcgcggat agacaaattc aacacattct actttaactc       120
     tctcttgtat tttatatcct tatttgcaac aatttcgttt tatttattct tggataacag       180
     ctttttgaat atttgtattt gtaactgtcc agaattttaa agtttgtttg tttgttttaa       240
     taaaaatacc ttatttttat taagactcaa gggtaaataa attctttcta ttttagttaa       300
     tttgaactag ctttcaactt cttcaaactg gtgttaaatt ttttttgttt tgtcttaatt       360
     agtcttggaa aacagttgtg ataaatatta gtatttccaa ctggccagac ttaaagggaa       420
     acaaaagatt ttcctacatt gagaggaagt gacaaggtgc cgttaaattg aggaaaacag       480
     agagggcaat acaaagagca ttttctgtcc caattttata gcactaagtc atgaaactag       540
     tctcgacttt gaactcaact ctatgaaaaa ttctggcatt tctttcgagt cgtgccatat       600
     cctggaaaag tattttacag ctttctttaa ctttctttct aatcttttct tgaagcttta       660
     tttttttaaa tcgtattctg gaatacatgc gaacgtgttt ccgaactatt ctatgtccga       720
     attcgaaata aataagtatc gcttcccttg ttctgaatag gtcttgaacc taatcaaaaa       780
     tcttttattt ttccagtctt tcaacttctg agaaaatcaa tttaaaatga cccttcgata       840
     cgtgtgacat ctagagttcg gtaaatacaa tttgattact ttattcttga tttattcacg       900
     atatttcatc tcataatttt ctatattttt tggcttaatt tatttaaaca ttttggctat       960
     atttatcgca aagaagcaga gggttctgag aattcgattg cagcaagtta actgctatcg      1020
     gaacaagatc tcatttgtcg aatttaattt gtattttttc tattgttgag attttcttgg      1080
     gcacgatggg gttagaccgc tctccagaaa ggggggctga atcaagccca agctataatt      1140
     gtccgatatg taaggcagat ataaacactg ccgaggtctt tgtaacctca tgccaacacg      1200
     agtttcacaa gcgatgcata gaagctcact ggaaggatag cgcacaatgt ccggtgtgca      1260
     aagtatcttg tagaccagct atctcaaagt ctatagaggg atctgacagg caaacccgaa      1320
     gtggctcgaa gaaacggcag ccgttagata cagtttctca gcaagcattg gataatacag      1380
     cttcaacctc aggacaaagt tcacaaacga acacaagtgg ggtcaacaat tcaagcgttt      1440
     tgacggctaa tgctattact ttactggcta tggagcgaag gttactggct acgctttcag      1500
     agaggatgac cgatttaatt caaaattccg taacagattg tatcaccagg gcgttagcta      1560
     attcaagtcg aggtatggac agtgctcaga gtgagcattc ttcacagcgg tcgctgggaa      1620
     acgatgatgt taggggcgga tctagagatg aatccagaag cgaatcaaga caagtcctct      1680
     tggctcctgg ttctcccgct tctcaaagaa gcacttcctc cgacttagta aaccgaccag      1740
     ataaagtcgt gcatatcctg aacggatgga aaatcaaatt ttcgggcaca ggagtatctg      1800
     tagacaattt tatttacaga gttgatacat tgactcggga gactttaggc aacaatttct      1860
     ctttgctgtg caaacatgct agtgtcctat ttgaaggcaa agcaaacgag ttttactggc      1920
     gataccataa agctcatgga gaaattaatt gggacagttt ctgttcagct ttgcgccttc      1980
     agtttcggca gagcagagac gatggcgata tcgaagaatt agttagaaac actaaacaaa      2040
     agccgaacga atcgttcgat tgtttttatg ataccattac tgcattagtc gatcagctgg      2100
     aacatccctg gacatcgaat aagttaattc gtgttctgag aaacaatttg cggccagaga      2160
     ttagacatga aatattaaat attcagatta attcagtttc tgagttaaga gagatttgtc      2220
     gcaggcgcga agccttttta gccgatgtta agcggtccag tggctacgcg cgaagcactc      2280
     cgtttagaag ggaagtgtca gagtttggtc aggaatatga ggctcagata gattccgaac      2340
     ctgaaactga tggcgacgtc gaagcgtttt ctttgttgtg ctggaattgc cgcaaagaag      2400
     gccaccgata tcaagattgc gtttcggaga gaagagtatt ttgttacggt tgtggagctg      2460
     caaatactta caagccaagt tgcagtaagt gttcaaaaaa ctccaaagcc ggcatgtcga      2520
     ggtcgcaatt cagacagaag acttcgagtg cctcccggaa ccaagccacg atgaccgaag      2580
     aatagaagat gcagctaatg ttgctcaact tcctttccct gacattcaac aactacctgc      2640
     tagtcccttg ctacatagca aaatctcgga cttaagagaa ataattttac cggaggataa      2700
     ctttaaatta caggatgtac aacaacacag gtctcgcaat tctactcgta taaaatcatt      2760
     ctggcaaaat gttaaacaat gtagaattgg catcgagtac ataagctctc taccgacagg      2820
     accaaaagat cctcgaccct ttttgccaat taatatgtta ggtcgagtag tttatggcct      2880
     tttagactcc ggcgcatcaa taagttgtgt tggaggaaac ttagctcgtg aggtaatatc      2940
     ccaaggggat tacaaagcaa ttaacagcaa tgctactacg gctgatggcc gatcacagca      3000
     gatactaggg tatttcaagg cggatgttga gtacgccgac gttaagaagc tgttgaaaat      3060
     ttacatagtg ccctcactga agcaggattt gtatcttggg atagattttt ggaaacttta      3120
     cgatcttctt cccaggaatt tgtttatttc cgaattagac gcaacggaga ctgactgcaa      3180
     ggacaaagct gaccagcatc aattgtccga aataaataaa gccaagttgg cgaatgttgt      3240
     gaattgtttt ccatcattta gtcaagaagg actcggtagg accaacctca tatcccattc      3300
     cattgacgtg ggcaatgcaa aaccaattaa acaacgccat ttccctgtct cgccggccgt      3360
     agaaaaggca atgtatgccg aaattgacag gatgttgcag cttggggtaa tagaggagtc      3420
     cgacagtgca tggtcttctc caatcgttat ggttacgaag cctggaaagg ttagaatttg      3480
     tttggactgt cgcaaggtga acagtttcac cgaaaaggat gcatatcctt tacctcaaat      3540
     tagtggcatt ctgagtcgct tgccgaaggc tgaatatata actagtcttg atctaaagga      3600
     cgcttattgg caagtgcctt tagacgtggc ttcgcgcgac aagacagcgt tcactgttcc      3660
     tggtagaccg ctctatcagt ttaaagtaat gccgttcggg ctgtgcaacg ctactagtac      3720
     aatgtctcgg ttgatggaca aaatagtgcc agctcatctt aggaacgagg ttttcattta      3780
     cctagatgat ctcttggtag tgtcatctag ctttgagagg cacttagaag tgttaagaga      3840
     agttgcgtta cacttgaggc gtgcaggttt gacgatcaat attggcaaaa gtcacttctg      3900
     catgctgagg gttcgatatt tgggccatat aatcggcgat ggtgggattc gaactgaccc      3960
     tgataaggtt gcagcaatta ggaatttccc attgcctaca actttgcgca gcttgcgaag      4020
     ctttatgggt ctgtgtggat ggtatcgcaa gttcgttcca aattttgcat ctctttctgc      4080
     cccgttaaca gatctgatga ctacaaaaag aagatttagt ttgactgagg cagcaataaa      4140
     atcgtttgag gaactaaaac aatgtcttag cgaggctcca gttttatgta gccccgactt      4200
     ctccaaacct ttcgctatac attgcgatgc tagcaaaacc ggagtaggag ctgtgttggt      4260
     gcaagtttct gaagaaggag acgagcgtcc tattgccttc atttcgaaga aattaaataa      4320
     ggcgcaaagg aactacacag tcactgagca agaatgccta gcagcaatcg tagctcttaa      4380
     gagttttagg gcttacgttg aaggacataa attcaaaata ataaccgatc atgcttcatt      4440
     aaaatggtta atgtctaatc atgacctaaa ttcgcgttta gctcgatggg ctttggcctt      4500
     gcaaaggtat aattttgaga ttgagcatcg caaaggttcg cttaacgtag ttcccgactc      4560
     cttgtctcgg gtgaacgaag acgtgatagc ggcaatagac ttgcgggaag gattccttgt      4620
     ggatcttaat tccgatcatt ttaaatcaga ggaatatacg cagctcgttc aaaaagtgag      4680
     tggaaatcag gcaaattttc ctgatctcag ggcggatagc ggatatgttt atcgaaaggc      4740
     agagcatttg acaggagagc aagtgcacga cgaatatgct tggaagctgt gggtgcctaa      4800
     ggaactggtg cctgagatac tttctcgagc tcacgatagc tcgttgtctg ctcatggcgg      4860
     aatacacaag acaattgaga gagtcaggcg gtattatttt tggccaggac tcgtggcaga      4920
     tgtcaaagcc tacatcaatg cttgtgaagt gtgcaaaaca acgaaagcac caaattatgt      4980
     tttgcgacca ccgttaggga aagcaccaga aagccaacga tttttccaac gcttattcat      5040
     agattttctc ggaccttatc cccgatctag aggtggaaat ataggtattt tcatcgtgct      5100
     tgatcatttt tctaagtacg tttttctaaa gcccgtaaga aagatcgact ccagtgtcgt      5160
     tataaagtat ctcgaaggag acttatttat gtcgtttggt actcctgaaa cgattgtttc      5220
     agacaatggg tctcaattcc ggtcgcatgc atttcaaaag ttgatgcagc aatatactgt      5280
     tacgcataca ctgacggcag tacattcgcc tcaggctaac gcctccgagc gcgttaacag      5340
     gtccgtcatc gctgcaatta gagcgtattt gaggcctgat caaaaggact gggacgaaca      5400
     cctaaatagg atcagttgcg cactaagatc gtccgtgcat tcaagcctgg gtactacacc      5460
     ctattacatg gtttttgggc agcatatggt caactccggg tccacatact ctttgctgag      5520
     gaagctcaac cttttggatg atcgatcctt aaagttaagt cgtcaagact cgtttgacgt      5580
     tgtgcgggag aaagcatgta agcgaatgct ggagaaacac tccgagaacg aaaagaaata      5640
     caatcttaga tctcgagttg tgtcttatgc agtgggacaa gaagtgttta gaagaaattt      5700
     taaacaaagc agtttccaga ccggatataa tgctaaattt ggaccttctt tcgtgaaagc      5760
     aagagtgcga aagaaattag gaagcgccta ctacgagtta gaagacttgc aaggaaaacc      5820
     cgtaggcacg tatcacgcga aagatattcg ccaatgatct ggcttcagtc ggcatcagtc      5880
     tagggtacca gtggtatgta taccctagcc agatgttacc ggggggcttt                 5930
//
ID   Gypsy-4_DSer-LTR repbase;    DNA;    INV; 2206 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2206
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1992-1992 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2206 BP; 687 A; 408 C; 437 G; 673 T; 1 other;
     tgtagtggcg actgaagacc ctgccacgga aatcagccta gaaggatgct acgctttatg        60
     tgaagcctaa gcctagcttc gccagttttg gcgatcacgt aaaggtggtc aagcgactac       120
     gtaacaaagc tttgagcaag cttgcacgtg ccgtaatgta gagctgcatt taattaaaac       180
     gcgttttggc atatttaaca gagaatttac atttgctctg aagacgaaga agagcgcatt       240
     tgccaattag gaaatttttt caagcagact ttccgtttcc gtgggaggtc tttttaaatc       300
     aaggtctaga agagcataga cgtgtcgggt gctcgtaatt atcaataaat cagacagtgg       360
     cagtgaatcg cgtaaaccaa gtgttgaagt ggccgctgaa agcttcgcag aaaaagtgag       420
     tagagaagtg ccaaatttgt ggggcacagt gagtaacctt tttgttgccc aggttaggaa       480
     aactagaaaa ttggaggcag caaagcagcg tcgacgcacg gccagggcca aaggtcgaca       540
     agacctttcg ccaagggaaa atcccttaat tttgttacca gggctcaagc cagcgggtaa       600
     ttatgaaaat agagtgtttg ttaaaggcag tgcttactgt ttgaatggaa aaatttacag       660
     attgggccct gcagtaaaga gtcaagtccc taggcaaggt gtacccctaa cctgagggga       720
     tgaagtagag aagctacaac cagcgcagga ggagccgatc cccaggaaaa atcaggccaa       780
     cagcgcggat gcgcaactca tctcttggcc agcttcgtgt cgggaaaagc gattaattct       840
     tttttttgtg aaaattttgc taacctcgcg ggttaacctt gacctgaccc ctgtgttcta       900
     acctcctcct aatgcaagtg aagaataatt ttaaataggg tttaccctta aagcccattt       960
     tggttacttt ttcttctgag atttgtgcga acaatttgct ctaacaaaga caatgtgatt      1020
     aatggcccaa aacatttgtt aatattggcc tttgaattta aaaacttatg ctcgaattat      1080
     gctctcgatc tgcttgcgtc tagccgtgaa tttaatgaag ccgaataatg aaaatttatg      1140
     ctgaatttcc agtattttaa tttaatttat tattaattta gttttttttt atttttacac      1200
     ctttattttt ttacttcaaa ttaagttcca ttgttgcata gcaaaaagaa taataatata      1260
     agaaaaatag ggccattcgg actttaaccc cttttttcca gagaaaagct tcgagggaga      1320
     tcgatcttcg ccgatggaaa attgagtgag tctaaaaaaa accattcgaa tgaaaacatg      1380
     caattgaaaa aaaaatgaaa atacttgaaa acttaaacca tttaaaaatg atttaattta      1440
     aaatatacaa aaataaaatc tccataagct aatgcaacaa ttgaaattga aattgaaatg      1500
     aactaaagac atgaagtaaa tttattttta atagttaata gaaaagagaa aacatgaagt      1560
     aaacgaacat ttaataatac aatttaaatt tgatttaaac ttttaagaaa aattatttct      1620
     tttgaatttt gtgcacaatt tttaaacaca tatatgtaca tctatgcacc tccttacatt      1680
     tttacatttt aattttagct tatatttatc tttgttagct ttaagtattg aattaatttt      1740
     attaaacaag ttttaatttt aaaaatcatg ttagcttaaa aaccggtata taccgactcg      1800
     taggatgact ccacggtcgt agggtcctga agggatcacc agagccatgc tcttgcggca      1860
     ggtgatcgta ggttgggtgg gcacaaagcg agcacaacaa catctgtgtc tctgcattgt      1920
     atagattttc tctctgtctt ctcttctctc cacttccgct tttcttctgt cttctttatg      1980
     ttgtgtgaat tttgtttatc atttcttccg gttttgttct agctcttatt ttgtcgcagc      2040
     acgctcaatt ctagtctttg taataataat gtgtagtcgt tgtccgagat ctgggtgagc      2100
     aagacctcca cccccaaagc cgacgagcta gagccggaaa aataaagcgt gccccagcag      2160
     cccagatcct caccaaccmc gacgaacttt atggttgcac gctaca                     2206
//
ID   Gypsy-4_DTa-I repbase;    DNA;    INV; 3799 BP.
XX
AC   AFFI01003930;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DTa_;
KW   Gypsy-4_DTa-LTR; Gypsy-4_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3799
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003930; Positions   11725    7927.
XX
CC   Positions [2804-3316] - Integrase core
CC   'GAAT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2012..3796
FT                 /product="Gypsy-4_DTa-I_1p"
FT                 /translation="MTFGLGNASQTFQRHMNNILGDLDFVAVYIDDICVAS
FT                 ANKAQHRQHLKIIFDRLRLANLSPTTERVNAINEFLKLTKICELRRFIVML
FT                 NYYRRFLPHAAVVQGILQALIPGNKKNDQLPLEWTEDASRAFALCKSDLAS
FT                 ATRLAHPIANAPLALQVDASNYAIGAALHQVCEGHLQPLSFYSKRMTDTQK
FT                 RYSTYDRELLAIFQAVKFNRFMIEGRDCTIYTDHKPLAYALRQDPEKALPR
FT                 QARQLSFIPEFCTKIEHINGAENSFDVPDARFQHINIDLIGPLPPSNGYRY
FT                 CLTVIDRFSRWPAVLPLTEITAEEVALALLHGWIAHYGVPVRITTDQGRQF
FT                 ESGLFKELSRILGVKLSRNTPYHPQSNGIIERFHRTLKAALKCHNTTDWYN
FT                 RIPIVLLGLRATLKTDINASPAEMLYGTTIRLPGDLFESTRIEDCNSDFVK
FT                 ILRNIMTQLQPLQTSDHATTRTSFVHKHLQTSSHVFIRDDTVRSPLKSPYD
FT                 GPYPVLHREDKFFDVEVKGKRLRGSIDRLKPAHLPDDRAIGEDASNRPTTP
FT                 AASPAIDVPAAIIADNARRTPCAATVSFPKPAIIFLIQQSAMLISEGE"
XX
SQ   Sequence 3799 BP; 1030 A; 1110 C; 879 G; 780 T; 0 other;
     ttggtgaccc cgacgtgatc tttgagcgaa aatcgggagg agatcgcagt aatccgctca        60
     gatttattga ccctgattgg gaagcgaaca cgttgttctt gcacaacctc gaaacatagt       120
     taaccacagc aatgatgagg acgccgactc gaggcagcaa gcgctgccgc atcaggcgcc       180
     cctccaaata cagcagcagg cggaccaacc gcagttgcca cttcaaccgc aatctccgct       240
     ccaaccggca attttgaagc cgactgctct ccagcagacc gctgcattta gcccgagtgc       300
     gtccgctccg ctacaatcgg gcacacccaa gctgggagtc gacgagcaga catcaattga       360
     gatcagccga gtgtcgttaa aggctccccc gcacttaaaa gggcacccgg acgtattctt       420
     caccctgctg gagtcgcaat ttgcaagtct ccgcattacg gtggacgaca caaaatttca       480
     cctaactctg aatatactgc ctgcagaata cctggaaacg atcatgtaca tcttgcgaag       540
     tccgccgccc actggaaaat acgaagcgat aaaggcaaaa attattgacg aacaccaggc       600
     ctcaactcag gcccagttcg cgcagttgtt ccgggcgttg gagctcggcg atagccagcc       660
     atctgtactg ctgcgccgca tgcgaaaatt ggccagagag aagacgccct gaaagccatg       720
     tggttggagc ggttgctcga gggcttgcga ctcgtaatgg cgatggcaca aggtgagctc       780
     gacaatctcg cgataatggc tgaccgcact tgggagtatg cgcaccccac gctcaacgca       840
     gtttccgcaa ccgccccgtt tacaacccac ttcacgacac gtcagcacga atctctggaa       900
     cagcaagtgg cggagttgag gaccatggtg gccgggctcg gaaaaccgcc agagccgcga       960
     tcgattcaac agtcctaacc gaaatcaacg tagttacaat cgatcaaagt cccaagacga      1020
     ccgtttttgt tactacctca atcgatttgg tgagaaggcg aacagatgca gatcgccttg      1080
     caagtggccg acggaaaact aacagccact tcgcacgagg caacatgtga agtggacgcg      1140
     atccaatcca gccgtctatt tatatacgac agaaatacaa acaccgaata tctgatagac      1200
     acaggtgcgg acatatcagt tctgcccgcc aacgcgttcc cacacctcaa accatcttca      1260
     acccatcgcc tatatgccgc caatggtaca ccaatcaatt cctacgggac aagaaccgtg      1320
     actctaacac ttgggctccg acgctgtttc aactggacgt tcatagtggc caacgtgtcc      1380
     aaagccatca tcggtgccga cttcctctcc cgatacggtc tcattatcga cgtaaagcga      1440
     cgaaaaatca tcgatgggac cacgtcactg tctacaatct gtaagcttcg ccatgtccag      1500
     tactcaccta tatcgaccgt ttccaacgat tgtgagtacc acgacatgat cttgcaatat      1560
     aaagacctga ctcttcctcc ggttttcgac aaggaggtcg tgcaaaacac cctactgcag      1620
     cactacattg cgacgaaagg ccaacctgta tttgctaaga ttcgccgact gaatgctgag      1680
     gctctgacca tcgccaaggg cgaattcaca agtatgcttg gagcggggat atgccgaccc      1740
     agcagcagca gctgggcatc gctaatacac atggtaagga aaaagaaagg cgaattttcg      1800
     gccatgtggt gactatcgac ggttgaacgc gatcactatt gccgaccaat acccactccc      1860
     acatatccac gatatcaacc aggtcttcgc cggcaagtcc tgattctcta ccatcgatct      1920
     ggtcagcgcc tatcatcaga tccccctcgc cccagaagac cgagagaaaa cagccatcat      1980
     cacaccgttt gggcttttcg aattcaatgt gatgacattt ggactcggca atgcatcgca      2040
     aacgtttcaa cggcacatga acaacattct cggcgatctc gactttgtgg cagtgtatat      2100
     cgacgacatt tgtgtggctt cggcaaataa agcccagcat cgtcaacacc ttaaaattat      2160
     ttttgatcgc ctgcgactag ccaacctatc cccaacaacc gaacgagtga acgcgataaa      2220
     tgagttcctg aagctgacaa agatatgcga gctgcgccga ttcattgtca tgctgaacta      2280
     ctaccgccga ttcttgccgc atgcagccgt cgtccaaggc attctccaag cgctcatccc      2340
     tggcaacaaa aagaacgacc agttgccgtt ggagtggacc gaggatgcca gtagagcgtt      2400
     tgcgctctgc aaatccgacc tggccagcgc aacacggttg gcgcacccaa tagccaatgc      2460
     accccttgca cttcaggtcg atgccagcaa ttatgcaatc ggtgcagcgc ttcaccaagt      2520
     ttgtgaaggg cacctgcagc cgctgagttt ctactctaag cgcatgacgg acacacaaaa      2580
     gcgctatagt acgtacgacc gggagctttt agcaattttc caagctgtca aattcaatcg      2640
     cttcatgatc gaaggacgcg actgcaccat ttacaccgat cacaaacccc tggcatatgc      2700
     acttcgacag gatcccgaga aagcattgcc acgacaggcg agacaattgt catttatacc      2760
     cgaattctgc acgaaaatcg agcatattaa tggagccgag aacagcttcg acgtgcctga      2820
     tgcccgattc caacacatca atatagactt gatcggcccg ctaccaccgt ccaatggcta      2880
     ccgctactgc ttgacggtca tcgaccgatt cagcagatgg ccagctgtat taccattgac      2940
     tgagatcact gctgaggagg tggcactcgc actcctgcac ggatggattg cacattatgg      3000
     agtgccggtg agaatcacga ccgaccaagg acgacaattt gaatctggcc tcttcaaaga      3060
     gctgtcgcgc atcctagggg taaaattgag cagaaacaca ccataccacc cgcagtcgaa      3120
     tggcattatt gagcgctttc atcgcacact aaaggcagca ttgaaatgtc acaataccac      3180
     cgactggtac aaccgcattc ccatcgtcct gcttggacta cgagcgacac tcaaaacaga      3240
     catcaacgca tcacccgccg aaatgctgta tggcactacc atacgcctgc ctggtgacct      3300
     cttcgaatca acccggattg aagattgcaa ttccgacttc gtcaaaatcc tgcggaatat      3360
     catgacgcag ctccagccac tgcaaacttc agaccacgct acaacaagaa cctcattcgt      3420
     ccacaagcat ctgcagacga gctcacatgt cttcatcaga gacgacaccg tacgctcccc      3480
     gttaaaatcg ccgtacgatg gaccatatcc tgtcctacac cgagaggaca aatttttcga      3540
     cgtagaagtg aaaggcaaac gactaagagg cagcatcgat cgactgaagc cggcacacct      3600
     gcctgacgac cgggccatcg gggaggatgc atcgaatcga ccgacgacac cagcggcgtc      3660
     tccagcaatc gacgtccccg cagccataat cgccgacaac gcgaggagga cgccatgtgc      3720
     ggctaccgtc tcgtttccga agccagcgat catcttcctg atccagcaat cagccatgct      3780
     gatttctgag ggggagtaa                                                   3799
//
ID   Gypsy-4_DTa-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   AFFI01003930;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DTa_;
KW   Gypsy-4_DTa-I; Gypsy-4_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-248
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01003930; Positions    7926    7679.
XX
SQ   Sequence 248 BP; 78 A; 59 C; 47 G; 64 T; 0 other;
     tgtgggggac taccttacga gtgccatcta catgtcagcg tctctcggtg aataccaaaa        60
     cagctgatct gcgcaagctt caccgggaat gacacttatc gttagattaa gctttatcct       120
     aagatctcat ctccagcgga ccctctacga aactagcctc gacgaggaac gtaaccggct       180
     aatattaata atcattataa ttataataat cagtgaataa aaggttactg tgatacagaa       240
     ctcccaca                                                                248
//
ID   Gypsy-4_DVir-I repbase;    DNA;    INV; 4839 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DVir_;
KW   Gypsy-4_DVir-LTR; Gypsy-4_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4839
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1813-1813 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2372-2914] - Reverse transcriptase
CC   Positions [3932-4408] - Integrase core
CC   'GAGT' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           740..4839
FT                 /product="Gypsy-4_DVir-I_1p"
FT                 /translation="MNRDEILALRVNELKEKLSALSLVTTGRKQTLQDRLL
FT                 EYYGLQVDDNESEYDDAGSAHTRQSSPMQIVRTTFTLRDIEDSLSQFNGSN
FT                 QPAVEKWIHEFEDNALAVQWNDLQKFIYSKQLLKGAAKLFVRSQHGISDWI
FT                 SLKQALLEEFGTVVSSIDVHRMLRNRRKRQGEDYIEYLYSLMEIGGPLNLD
FT                 DSSLIEYFIEGIPDSRSNKSNLYQAKTLQQLKEQIKVYEKIRSSRPQASNT
FT                 GRMHNDTEEKKPDLNKERIKKCFKCGDPSHLARECRQPIKCYKCAQPGHKA
FT                 ANCSGSRAVEKKEGQNANTMINKANSSGKCIFKELSCKNICFSALIDTGCD
FT                 LCLIRDDILKELGKVELNNEKQCLVGICNSELNTLGSFVTQVEVDGILLDI
FT                 TFHVTSRDDIQYSAVIGNSVLKQADLIVSENFVEFRPKVKDNANERVIDKT
FT                 STITEDTVENKKPDIELLQEFKDVCFFAENQEAEIDLHHLEKPVADAVQAI
FT                 IKNYSPEMKKKCPIEMKILLNDERPVFERPRRISHADKSIVDSQIKTWLEE
FT                 KIIQPSTSEYASPVVLVPKKDGTKRLCCDYRRLNEKIARDNFPMPLIDDVI
FT                 ERLQGQSVFTTLDLANGFFHVPIEPNSRKFTSFVTSAGQYEFLFVPFGISN
FT                 SPAVFSRFIHAILVDLVQDGTVVTYMDDLIIPSKDIDEGIQKLKRVLDRAA
FT                 EFNLRIKWSKCQFLMKEVDFLGYVIQGGTIRPSARKTQAVQNFPIPHDRKS
FT                 LQRFLGLTSYFRRFVEDYALIAKPLSDLLRKDVQFKVDEEQLVAFRQLKSA
FT                 LVSTPVLRLYNPKAKTEVHTDASMNGYGGVLLQKDSDDQLLHPIQYLSRKT
FT                 KPSEEKYHSYELEVLAIVEALKKWRVYLLGIKFKIVTDCNAFALTMKKRGD
FT                 IPLRVSRWALFLQDFDYSIEHRNGSKMRHVDALSRVSCLMLEDSLQHRLQQ
FT                 AQARDDWVRAVLTVLDCSTYEDFYVRHGILYKDPIKELIVVPSLMEDEIIR
FT                 IAHKQGHFSAKRTQEAIEKTFYIPQLSSKVPKIVKSCVECIISESKSGKKE
FT                 GFLAPIDKEDKPLGTYHVDHVGPIEQTSKNYNYILVIVDAFSKFVWLYPTK
FT                 NTTAEGVVDRLRRQAAVFGNPKRIISDRGAAFVSNLFKEYCETEGIQHLTI
FT                 ATGVPRGNGQVERIHKIVIPMLSKLCRENPCSWYKHIDIVQQTINSTPPRS
FT                 TKVSPFRLLTGVEMKLKRISDLQELLEEAAIEELSNEREEVRKEARQNIAK
FT                 IQQENRKSFNKHRKKESNYKINELVAIKRTQYGTGLKLKPKFFGPYKIVKI
FT                 QNHGRYDVEKVGDHEGPGKTTTVAEYMKKWEPNANLTEESSFGSNEESGWP
FT                 SVGV"
XX
SQ   Sequence 4839 BP; 1710 A; 831 C; 1069 G; 1229 T; 0 other;
     gaaattgtga aattcgtaaa ttgattaacg agtacaaacg tatgcaagac tattaatcgg        60
     agcataaaac gaagcgggtg catgaaaatt cattaaaatt cgtatgccct ggaaaaaatg       120
     gaaaaagtca agaatcgtct aggattaatg gcgacagcgg cgaagtatgc ctagagagct       180
     ctagtaagag cgagacaaac agtcgtgtat tgcgtgacag tggtcgataa gcgcaagcga       240
     gaaggcgatg ttttaaattc tgcgtagcaa aggctggata gcgcaaaatt ttcacttcgt       300
     gatgaaataa gaagttgcag atcaaagagg cgaagagcga agagcgcgga atctttcaat       360
     aaaagagcgt gtgactggaa cgtgcttcaa cacgacaacg atgatcacag ggtgtatcaa       420
     gttacagatc aacaacagag tatgttattt cgtcattata tgaaaataat taactagttg       480
     ttgagtaaag agtgttaaat cagtaaaaaa ttttcaaaga atcaaattat aacaaagaag       540
     aaattaagtg taagcaaaca caaagtgaaa gtataagtta agacagacga atataataat       600
     ttaataattt ctaaagttgc tgctaaaatt tgattcataa gagtttaatt acttatacca       660
     ttaagttaag tacattgaat tgtttatttg taagattcaa ttttaagcat tgtgaaaagc       720
     gagcaacgac gataacaaaa tgaacagaga cgaaattttg gcgttaagag ttaacgaatt       780
     aaaagaaaag ttatcggcac ttagtttggt aacaacaggt agaaagcaaa ctttgcaaga       840
     ccgactttta gaatattatg ggttgcaggt tgacgataat gaatctgagt atgacgatgc       900
     tgggtcggct catacccgtc aaagctcacc aatgcagata gtccgaacaa cgtttacatt       960
     acgcgacatt gaagattcac tctcgcaatt caatgggtca aatcaaccag ctgttgaaaa      1020
     atggattcat gaatttgaag ataacgcttt ggcagtgcag tggaacgacc ttcagaaatt      1080
     tatttactca aagcaattac taaaaggtgc agcaaaatta ttcgtgcgca gtcagcatgg      1140
     aatttcagat tggatatctt taaagcaagc gctattggaa gaatttggga cggtagtttc      1200
     atcaatagac gtccaccgca tgttgcggaa taggcgtaag cgtcaaggtg aagattatat      1260
     agaatatctg tatagcctta tggaaattgg cggacctctt aacctggatg actcaagcct      1320
     gatagaatat tttattgagg gaatacctga ctcgaggagt aacaaaagta atctgtatca      1380
     ggccaagact ctgcagcaac taaaagaaca aatcaaggta tatgagaaaa tccgtagtag      1440
     tcgccctcaa gcgtctaata cgggtaggat gcataacgat accgaagaaa agaaacctga      1500
     cttgaataaa gaacgaatta agaaatgttt caaatgcggc gatccatcac atctagccag      1560
     agaatgtaga cagccaataa aatgttacaa gtgtgctcaa ccagggcata aggcagctaa      1620
     ctgttcagga tcgcgtgcag tggagaagaa agaaggccaa aatgcgaaca cgatgataaa      1680
     caaggccaac agtagtggaa aatgcatttt taaggagttg tcttgtaaga acatatgctt      1740
     ctctgcatta atcgatacag gctgtgacct ctgtctgata cgcgatgata tccttaaaga      1800
     gctaggaaaa gttgaactga ataatgaaaa acagtgtctt gttggtatct gtaatagtga      1860
     gctaaataca ctgggaagct ttgtcactca agtcgaagtt gatggtatct tactggatat      1920
     aacctttcat gttacgagca gagacgacat ccaatactca gctgtaatag gaaacagcgt      1980
     attgaagcaa gcggacttaa tagtatcgga aaatttcgta gaatttcgac ccaaagtgaa      2040
     ggacaatgca aacgagagag taattgacaa gacatcaaca ataacagaag atactgtcga      2100
     aaataagaag ccagacatag agcttttaca agaattcaaa gatgtatgtt tttttgcaga      2160
     aaatcaggag gctgagatcg atctacatca cttagaaaaa cctgttgcag acgcagttca      2220
     agcaataatt aaaaactatt cacctgaaat gaagaagaaa tgtccaattg aaatgaaaat      2280
     tttgttaaat gatgagcgtc cagttttcga acgcccaagg cgcatatcac atgcggacaa      2340
     gtctattgtc gattcgcaaa tcaaaacttg gctagaagaa aagatcatac agccaagtac      2400
     atcggagtat gcatctcctg ttgtcctcgt tccgaaaaaa gatggtacca aaagattgtg      2460
     ctgtgactac aggcgtttaa acgaaaagat cgcgagggac aattttccaa tgcccttaat      2520
     agacgatgtg attgagagat tgcagggcca aagtgtgttt actacacttg atctcgcaaa      2580
     cggatttttt catgttccaa ttgagccaaa ttcgagaaaa tttacatcat ttgtaacaag      2640
     tgcagggcaa tatgaattcc tgttcgtccc ttttggaata tcgaactccc cagctgtatt      2700
     ttccagattc attcatgcaa ttcttgtaga tctggtacag gatggtacag tcgtaactta      2760
     tatggatgat cttataattc cctccaagga tatagatgaa ggtatccaaa agttaaagcg      2820
     cgtactggac agagcagcag agtttaactt gcgtattaag tggagcaagt gccagtttct      2880
     catgaaggaa gttgactttt tagggtacgt tatacaggga ggcacaataa gaccatctgc      2940
     aagaaaaacc caggcagttc aaaattttcc tataccgcat gaccgaaaga gtttgcagcg      3000
     ttttctcgga ttaacatcgt actttaggcg ctttgtagaa gactatgcgc tgatagccaa      3060
     accgctctcc gatttgttac ggaaagacgt gcaatttaaa gttgatgaag aacaactagt      3120
     cgcattcagg caattaaaat cagcattagt tagtactcca gtattgcgat tatataatcc      3180
     gaaagccaag actgaagtgc atacggacgc ctcaatgaat ggttatggtg gtgtactctt      3240
     gcaaaaagac tcggacgatc aattgttgca tccaattcaa tatttaagtc ggaaaacaaa      3300
     accctcagaa gagaagtatc attcttatga gcttgaggtg ctggctatag tcgaggcctt      3360
     gaaaaagtgg cgcgtttact tacttggcat aaaatttaag attgtgaccg actgtaacgc      3420
     tttcgctttg accatgaaaa aacgtggaga tattccattg agagtctcgc gttgggcact      3480
     cttccttcaa gattttgact acagtattga gcatcgaaat ggcagcaaaa tgaggcatgt      3540
     tgatgcttta agccgcgtat cctgtcttat gcttgaagac tcactgcagc acagattgca      3600
     gcaagcacaa gcgagagatg attgggtccg agcggtgcta actgttttgg attgtagcac      3660
     atacgaagat ttttatgtta ggcatggtat tttatacaag gatcccatca aggaacttat      3720
     agtagtacca tcgctgatgg aagacgaaat cataagaatt gcacacaagc aagggcattt      3780
     ctcagcgaaa cgaactcaag aagcaatcga gaagacattc tatattccgc agctatcgtc      3840
     aaaagtgcca aaaattgtaa aaagttgcgt agaatgcata atatctgaga gcaaatcagg      3900
     caagaaagaa gggtttttgg caccaattga caaagaagac aagcccttag gcacgtacca      3960
     tgtggatcat gtcggtccaa tagaacagac aagtaaaaac tataactata ttctagtgat      4020
     agtcgatgcg ttttcaaaat ttgtttggct ctatccaaca aaaaatacca ccgcagaagg      4080
     agttgtagat cgactaagac ggcaggcagc agtgtttgga aatcctaagc gcataatatc      4140
     agataggggt gcagctttcg tttcaaacct gttcaaggag tactgtgaaa cagaaggtat      4200
     acagcatctt acgatagcta caggagttcc aagaggaaac ggccaggtag aacgtataca      4260
     caaaatcgta ataccaatgt tgtctaaact atgtcgtgaa aatccttgta gctggtataa      4320
     gcatattgat atcgttcaac aaacaatcaa cagtacgccg ccaagaagca ctaaagtttc      4380
     accgtttaga ttgttgactg gtgtggagat gaaacttaaa agaatatcgg acttgcaaga      4440
     actattagaa gaagctgcta tagaggagct aagtaacgaa agagaagaag ttcgtaaaga      4500
     agcgcggcaa aatatagcaa aaatacagca ggaaaaccga aaatctttta ataaacatcg      4560
     caaaaaagag tccaattata aaataaacga acttgtagcc attaagagaa cacagtatgg      4620
     tactggttta aaattgaaac ctaaattctt tggtccatat aaaatagtaa agattcaaaa      4680
     ccatggtaga tatgacgtag aaaaggtagg cgaccacgaa ggtccaggga aaactacaac      4740
     tgtagcagaa tacatgaaaa aatgggagcc aaatgctaat ttaacagaag agtcgtcatt      4800
     cgggtcgaat gaagagtcag gatggccgag tgtaggagt                             4839
//
ID   Gypsy-4_DVir-LTR repbase;    DNA;    INV; 380 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DVir_;
KW   Gypsy-4_DVir-I; Gypsy-4_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-380
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1814-1814 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 380 BP; 139 A; 57 C; 74 G; 110 T; 0 other;
     tggaaacaga actaggagtg gtcgaactta caatcagtta aattaaacag gcgagtataa        60
     tgttggcatt atactcattt ggtaatataa aatcacttat catatgcaac cctgctatgg       120
     atatttaatc aacgatagat ttatcgataa aaatacaaga aggagaagct cagttgtaag       180
     ctagaagagt caatgaaaag atgtgttcgc tgttgctcgt tgtctttgaa atacatgtcg       240
     gaaaatgtac aataatcata agtttacgct tgttcaccaa tttctctaaa taaaataata       300
     tgaacataaa gaactcaagt gcttgtgaag gccatcgaat ggtcatccct acaaatttgg       360
     tgtcagaagt gggatagaca                                                   380
//
ID   Gypsy-4_DWil-I repbase;    DNA;    INV; 5204 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DWil_;
KW   Gypsy-4_DWil-LTR; Gypsy-4_DWil-I.
XX
NM   Gypsy-4_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5204
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1192..5202
FT                 /product="Gypsy-4_DWil-I_2p"
FT                 /translation="MLYNEITELTVAGLKEKLKELNLSVKGNKPELRERLI
FT                 SYFDLDTNEESLYSEANTSIQGEVEEVEREVTMAFTLKDIRDSLTEFDGSN
FT                 KKDVLEWLSDFEGTAVTVQWNDLQKFIYGRQLLTGAAKLFVNSQEGLTSWG
FT                 RLKSALQDEFTVKLSAKEVHKQLESRKKKYNESLVEYFYLMKSIAKRGSLD
FT                 EESIVEYIIEGIPDSKMNKSVLYQARDLKELREKLTMYEKYASNQESKTKP
FT                 RFEKLQSRNTLEDFKCFKCGGKNHVAKNCKDNFKCFKCNQMGHKANQCEAR
FT                 NTKETKKDNTNYQQMTLKFNRSFKDVPIGNGVLSALFDSGSDLSTISESTY
FT                 KEINPVNLNRECKEVIGVGGKKIRTLGFFNIKTELDGNAVEIDFHVVRDKD
FT                 TLYKGVIGNDVLENLNVTIGRKRIVFHKEDEIPKPISREVQTKTNISELQT
FT                 TFERIMTMTLDEDAPLEIDLIHLDEGIKSDILEMLKSYKPVKPTISPVEMK
FT                 IVVTDDIPISQRPRRLPYQDQVIVNQQIKEWMEAGIVRQSFSEYSSPVVLV
FT                 SKKDGKKRLCCDYRKLNQKIIKDNFPTALIDDVLHKLQRGKVFTTLDLCNG
FT                 FFHVPVDESSRKFTSFVTQNGQFEFNFVPFGITNSPAVFMRYIFAVLRPLI
FT                 DEGIVILYMDDIIIPSGDEEDGLNKLKRVLNLAETSGLKIKWEKCQFLQRR
FT                 VNFLGYIIENSTIKPSREKTMAVESYPIPRDKKGLQRFLGLTSYFRRFVKD
FT                 FATIARPLTNMMKKDVPFMMNEEALASVRQLKVCLSNPPVLRLFDPMGITE
FT                 VHCDASMYGYGAMLLQFNSEDQNFYPVEYMSRKTTPAEEKYHSYELEVLAI
FT                 IQALSKWRVYVLGKKIKIVTDCNAFAMTIKKKEVPLRVARWAIFLQDFDFE
FT                 IEHRPGTKMKHVDALSRIHCLLLENSLRHKIQQAQLLDEWINAVRKVLENG
FT                 TYDDFYLQYDILHKDPIKELIVIPSAMEREIITMAHRQGHFGIKKTIDVLG
FT                 KDYYISNVASKVEVVIKSCVECIVSEQKHGRKEGFLNVIDKGDEPLTTFHL
FT                 DHIGPMESTKKQYNHVLVIVDAFSKFVWLYPTKSTGSEEVVDRLQRQSEVF
FT                 GNPKRFITDRGTAFTSNMFKEYCTSQKIQHLLIATGVPRGNGQVERLNRTV
FT                 STLLTKLCAEEPKSWYKNVGRVQQFINSSPPRSTKISPFKILTGIEMRTTY
FT                 DQELKSQLEEELLXELQREKDEIRRLAKDNIAKIQEENRKSYNKFRKPETE
FT                 YEVGDMVAIKRTQFGAGLKLKKNYLGPYKIVRKLRHGRYSVEKIGDGEGPN
FT                 RTNTVAEYLKMWNPSFGTNEAVEWP"
XX
SQ   Sequence 5204 BP; 1939 A; 802 C; 1167 G; 1295 T; 1 other;
     ttttgggggc tcaaccggga tagtaacaaa gagcgagtga gagagaaaac tttatgaaga        60
     aatcgcgcgt aattgcaaga gtgacgccaa cataaggaaa catgagagca agcgagacaa       120
     aataaaatgc gtgctttaat ttcaccaccg aaagacaaga aaagagacga acacatgaga       180
     aataacaaca aagacgaaaa gatgagtaac gcttaaaaga cgacaatttt gttcagagag       240
     gaacaaaatg aggaaaagca agaacaaaga cgaaaatatt tgaaagacga acaacttccc       300
     aaagacgaaa atttgttcag agacgaacac gaagagcatc aaaagacgaa agacgacaaa       360
     aatttgttca gagagggaca aaacgaggag aaaaattgaa cttgcttgga ttcggcgcta       420
     tccaatcatt catgcaagcc aagaagtaac ctggagcaga gatcggacta ggagtcacac       480
     ggagagtggc tgctaatacg aggagtacca gatcaagacg agacgacccg attcaccact       540
     acatgcacag tcagaaggca tcatccatcc aacattgtgt gtgtgtgagt gagaagaagc       600
     taagacgtaa agaagacgac acgtaagaag acaactgcgt aaggaagact acacgtaaga       660
     agacaactgc gtaaagaaga tcacgagaaa cggacaacat agacgtaaaa taaccagggc       720
     tacatcgcaa gtacatttat ttttaatact aacaatagtt aaaagttttg aaataagaga       780
     acagacgaat tacaattttt gaaataagaa aagatgattt aaaagttgtg aaataagaga       840
     acaatgaaca atttttgaaa ataagaaaag aagatttaaa attttgaaaa aaagaaaagt       900
     tgatttaaaa gttttgaata agagaaaaga tgaattacaa tttttaaaaa taagaaaaga       960
     ggatttaaaa ttttgaaaat aagaaaaaag atttaaaatt ttgaaaaata agaaagaaga      1020
     tttaaaattt tcgaattaga gaaagagaaa taagaaaaga cgaactacga gttttggaaa      1080
     ataagtaaga aagaaaattc aacaaagagg aattagaata tttgtaatca tataaactaa      1140
     catctaattt aaacactaat ttaaattatt ttgtaatcaa tatttttaca catgttgtat      1200
     aacgagatca ccgaactgac cgtcgcaggg ttaaaagaaa agttaaaaga gctgaattta      1260
     agtgtaaaag gcaacaaacc tgaattaaga gagagattaa tttcatattt tgatttagac      1320
     acgaacgagg aatccttata ttcagaagct aataccagta ttcaaggcga agttgaagaa      1380
     gttgagagag aagtgacaat ggcgttcaca ttaaaagata ttcgtgattc gttgacagag      1440
     tttgatggga gcaacaaaaa ggatgtatta gaatggcttt cagactttga gggtactgct      1500
     gtaacagtac aatggaatga tcttcagaaa tttatctatg gtagacagct gttgacagga      1560
     gcggctaagt tgttcgtaaa tagtcaagag ggtctaacaa gttggggtag acttaagagc      1620
     gcgctacagg atgagtttac tgttaaattg tcggcaaaag aagttcacaa gcaattagag      1680
     agtagaaaga agaaatacaa cgagagtctg gttgagtact tttatctaat gaagagtata      1740
     gccaaaagag gcagcttaga tgaggaaagc attgtcgaat acatcattga gggtatcccc      1800
     gactctaaaa tgaataaaag cgttctttac caagcgagag atttgaagga attacgagag      1860
     aaactaacga tgtacgagaa atatgcttcc aaccaagagt ctaaaacaaa accacgattt      1920
     gagaagctgc aatcgaggaa tactttggag gatttcaaat gctttaaatg tggaggaaag      1980
     aatcacgtcg ctaagaattg taaagacaat ttcaaatgtt ttaaatgtaa tcagatgggc      2040
     cacaaagcta atcagtgtga ggcaaggaac acaaaagaaa ctaagaagga taatacaaat      2100
     tatcaacaaa tgacacttaa gtttaatcgt tcttttaagg acgttccaat aggcaatgga      2160
     gtattatctg ctctgtttga ttcgggcagt gatctttcca ccattagcga gagcacttat      2220
     aaggaaataa acccggttaa cttaaaccgt gaatgcaagg aggtaattgg cgtaggaggg      2280
     aaaaagattc gtacactggg gtttttcaat ataaaaacag agttagatgg caacgctgta      2340
     gaaatagact ttcatgttgt tcgggataaa gacacattgt ataaaggagt gatcggcaat      2400
     gatgttctgg agaacttgaa tgttactatt ggaagaaaac gaatcgtgtt ccacaaagaa      2460
     gacgaaatac caaagccaat aagccgagaa gtgcaaacta agacaaacat ttctgaattg      2520
     cagacaacgt ttgagagaat tatgacaatg accttggatg aagacgctcc actggaaatt      2580
     gatctcatcc atttagacga aggtataaaa tcagatatat tagaaatgtt gaagtcatat      2640
     aaaccggtaa agcctactat ttcgccagtg gaaatgaaga ttgtggtaac agatgatatt      2700
     ccaatttctc aaaggccaag acgtttacca tatcaggatc aagtgatagt gaatcagcag      2760
     ataaaggaat ggatggaggc tggaatcgtt cgtcaaagct tttccgagta ttcatctcct      2820
     gtggtgctag tttcaaaaaa agatggcaag aaaagattat gctgtgatta caggaagctg      2880
     aatcagaaaa taataaaaga caattttccg acagcattaa ttgacgacgt tttgcataaa      2940
     ctgcagagag gaaaggtgtt tacaaccctc gatttatgca atggattctt ccacgttccc      3000
     gtagacgaaa gctcacggaa gtttacatcg tttgttactc aaaacggcca gttcgagttt      3060
     aatttcgtgc catttgggat aaccaattcg ccagctgtat tcatgagata catatttgca      3120
     gtcttaaggc cacttatcga tgaagggatt gttattttgt atatggatga cattatcata      3180
     ccatcaggtg atgaggaaga tggattaaat aagctgaaaa gagtattaaa tctagccgag      3240
     acttcaggac tgaaaattaa atgggaaaaa tgtcaatttt tacaaaggcg agtcaatttt      3300
     ctaggataca taattgaaaa ttcgactatt aaaccgtcca gagaaaagac tatggctgtg      3360
     gaaagttacc caatcccaag agacaaaaag ggcttacaaa ggttcttagg tcttacttcg      3420
     tattttcgcc gattcgtgaa agactttgca acaatcgcta ggccgttgac gaatatgatg      3480
     aaaaaagatg taccattcat gatgaatgaa gaagcacttg catccgttag acagttaaaa      3540
     gtatgtttgt caaatccgcc agtattacgt ttgtttgatc cgatgggtat taccgaagtt      3600
     cactgtgacg ctagtatgta tggttatggc gctatgttac tacaatttaa ttctgaagac      3660
     cagaattttt atcctgtgga gtacatgagt cgtaagacta caccagcaga ggagaagtat      3720
     cactcatatg agttggaagt actcgccata attcaggctt tgtcaaagtg gagggtttac      3780
     gtacttggga agaagataaa aatcgttaca gattgtaatg cattcgcaat gacgattaaa      3840
     aaaaaagaag tgcctttaag agtggctcga tgggcgatat ttctacaaga tttcgacttc      3900
     gagatcgaac atcgacctgg aactaaaatg aaacacgtgg atgcgttaag cagaattcat      3960
     tgcttattgc tcgaaaattc tctgagacac aagatacaac aggctcagct tttggatgaa      4020
     tggattaatg cggttagaaa ggtattggaa aacgggacat atgacgactt ttatttgcag      4080
     tacgatattt tacacaaaga cccgattaaa gaacttatag ttataccgtc ggcaatggaa      4140
     agagaaatca taactatggc gcaccgccag gggcattttg gaattaagaa gaccatagat      4200
     gtcctaggaa aagattatta tatatcaaac gttgccagca aagttgaggt ggttatcaaa      4260
     tcgtgtgtgg agtgcattgt gagcgagcag aagcatggaa ggaaggaagg atttttaaat      4320
     gtcatcgaca aaggtgatga gccattgaca acgtttcacc tagatcacat aggccccatg      4380
     gaatcgacaa aaaagcagta taaccatgtt ttggtcatag tagatgcttt ctccaagttc      4440
     gtctggctat atcccactaa gagcacagga tctgaagaag ttgttgatcg tctgcagaga      4500
     caatcggaag tattcgggaa cccgaaacgt tttataactg acagaggaac tgctttcact      4560
     tccaacatgt ttaaagaata ctgtacctcc caaaagattc agcatttact tattgctaca      4620
     ggagtacccc gtggaaatgg gcaagtcgag cgtcttaata ggactgtttc aacgctattg      4680
     accaagttat gtgcagagga acccaagtcc tggtataaaa acgttggcag ggtacaacag      4740
     ttcatcaact cttcgccacc acggagtact aagatctcgc cttttaaaat tttgactggt      4800
     attgaaatga gaacgacata tgatcaagag ttaaagtccc agttagagga agaattactt      4860
     mtagagttgc aacgggagaa agatgaaatt cgtagattag caaaagataa tatagcaaaa      4920
     atacaggaag aaaatcgtaa gtcatataac aagttcagaa agcccgaaac agaatacgaa      4980
     gtgggcgata tggttgctat aaagcgtacc cagtttggag cagggctgaa gcttaagaag      5040
     aattatctag ggccgtataa aattgttagg aagttgagac atggtagata ctcagtggag      5100
     aagattgggg atggtgaggg cccaaatagg accaataccg tagcggagta cctgaagatg      5160
     tggaatccat cattcgggac gaatgaggct gtagaatggc cgaa                       5204
//
ID   Gypsy-4_DWil-LTR repbase;    DNA;    INV; 278 BP.
XX
AC   scaffold_181026;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DWil_;
KW   Gypsy-4_DWil-I; Gypsy-4_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-278
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181026; Positions  153207  152930.
XX
SQ   Sequence 278 BP; 86 A; 32 C; 69 G; 91 T; 0 other;
     tgtaggattg cgtgagaacc cctaatggta tcagaatgtc gataacgata ttagtttgat        60
     agatatcgat agatggtcaa tcggggaggg ggagagatgc ttgagttgct ggacgaagag       120
     gttgtgttgg tctcgttaaa ttaaaagttt tcaataagat ggtttctttt tcttttgtta       180
     ataattaaat aaaaatgata agctaagata catgcataaa agcaaagtgg tgtgaagagt       240
     atattttatt ctggtccagt ggactcagcc tttctaca                               278
//
ID   Gypsy-4_FoCa-I repbase;    DNA;    INV; 8754 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-8754
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2573-2573 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..2053
FT                 /product="Gypsy-4_FoCa-I_1p"
FT                 /translation="MPLWNFFSRRTDPSPPPSNLLEAPESVFVSGRRFDHL
FT                 RDPIDPDSDREHQIVSPTDSSQCGVVTDDFGDTNSDPLPLSHLPSAPDPDH
FT                 SASSILPGNINDNLLNNQVRPPSVTFIRENQPVNFVPTPEPSRPPNPPPPP
FT                 PANTFFFGPRALNPDAVFRFPSSPSPFIRPPPPNRPPVPPPTPAAATANMA
FT                 ARNFFTGSPPQPAPLVNINLEMPKYGHELSKLGLRLFIQRFQRWAEAKRLT
FT                 VPQAKLTLPLAFSNATAQHYFMINFAEQDNPAIDWATFINNFLTKCPMEVD
FT                 DHTSVLDLLKSPKPELEKASVYLQRLRAAMSEEYTRHAEPDIIRLLMDNLD
FT                 PSLRQFLECKGPPLTYGDLVSLVKHYEDRGLQKTLTPQLQPPVTIISPTAP
FT                 PQSVGLDAFAGLHQAPVTPLAPPTAQPKPVNNATDGGLSLGVNLTNVKNMQ
FT                 GLLNHLSDLQAAIMRLNVSPSQNHGSRSRPDQSQDNRAPRPNGQRPSFECY
FT                 YCGIRGHRIIECRKKMRGDDGLQLNGQGRGRNGGYRNNDTSGAGYRRDNRR
FT                 RDDSPRDHRRRNDNRGYRRRDDSPRDQRRNSDFQQRRHDESPRRRDNFHHN
FT                 TTDRDDTRRENHQWDERSTRTPPGSPPPSGNARLWAD"
FT   CDS           1990..5976
FT                 /product="Gypsy-4_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="AFNAYPSRFTAPVGKRPALGRLICPPSLKPLKSILRP
FT                 SSPSLDPAGPRHVTFNQNTIDLRINLQDFSANHGPVTIDTFINNQRITATV
FT                 DNGAKASIITEALAVGLPRINPNLPYRLSDFGNHTIRDCGLVILPLKIGTQ
FT                 QVTYPFFVVPSSPCPLLLGHDFQEHFLLSSNESFRCLMSPILGSVPYTSAP
FT                 QRLFHSCDNKEIMQSLNRNMDMKLLDASQRTPATQPEQPPKPQPLLPSLTS
FT                 SPAASGPSPPPPPPLPSALLSPPPAALSPPPAAAAELSPPPFLMDLTKLKI
FT                 NPNISPPTRAKLLSLITEFKHIFSWDPTKLGRTDRVEFDIDTGDHPPIRMQ
FT                 QFNHPEKIHRDIKSHVDKLLAQGIVRPIRGSWSSPCFFVPKKDDDGNLTSQ
FT                 RFTVDYRSLNRITKKIQWPQTRIDDIFQSLRGKKYFTSLDFTSGYYQVPMT
FT                 PEAQEKATFVTREGTFAPTVLPFGVSNGPARFAELLDEVLSGLKGEVCQNF
FT                 FDDIVSAGATEEEALEKLRLIFERIAAEGLTLKPYKCDFLQDEINLLGFSL
FT                 SAMGTKPDEKKLRGVSQLKPPTTGHKVKKLVAFFSYFRKYIPNFSRIVHPL
FT                 QCLSTIRGXITWTEEHQAAFDTVIARLLSRPVLRLFDPALPTLLETDASSY
FT                 GLGAGLFQFYEGEKHPVAFISRTLSVAEKRYPSVMLELTAICWALKRLRPL
FT                 IYGVPLSIATDCHGICWLLQGSKKELNSRLSSMVVCLMDYTIVEIRHVSGK
FT                 KHECADFLSRYPTEDFQPNRDELDDLPILTIGSLNLMSSQGDDPELAIIIN
FT                 KLKLGQDTKINEHFTLKDDVLFKRDNQYNRLTLVIPSKLIPSVLDECHDSP
FT                 FSGHMGFTKTYDRIKQRYWFPGMRRQIMRYVATCSKCQFRKSPRSKPNGLF
FT                 QCIKVPKNAFQRVQIDVAGPFPASKSNKKYIITASCYLTKWLETEAVKSAQ
FT                 TEDIINFLVKLICRHGVPAILQSDKGTIFTSDLLSQLSSALGIKHLLSTAY
FT                 HPQSQGQVERSHAVLNDCIQIYLTDSLKSHSDWDTWLPHITFAINSSKHTT
FT                 TGFSPFELLYGREVVLPTESAFIAEEYISLEKFLSHIRSARTLAWDRIQHS
FT                 QEVAKFYYDKKRKHIEFPIGSQVLCRKYIQKKGLAAKLMQYWFGPYMIKRK
FT                 LSDVNYIISATMSNGRVITETAHVEKLKLYNSRTTDETTVSTFSPSALDIS
FT                 HDASTDPPQSADHQDNADYADEEVLSSLDPPHSSRSSPGSPTPTPSDTLTS
FT                 QQAQLPTNNFLFDSDFPQLSPQAHTYESTLSQSTPPVLSPVFPHNKQPTPA
FT                 HQYNLRSRKKVTFQEGS"
FT   CDS           5976..7922
FT                 /product="Gypsy-4_FoCa-I_3p"
FT                 /translation="MNPLCLLCVALVSGARLTGAKDQLSTTITRLSTGILT
FT                 TNVKIIPYESTVPLIYEMDLPDLDQWTRLLTPLNDTDIGQILNATHSLALR
FT                 LLPIFPSPSSTRHRRSIEIIGDFYNWCCGVAQQKTVDRMQLNEHHLDNFTL
FT                 QLQSALTAEHSFTVESTKIFNKDFQALEKALSETDRVVHNELRDIANEEER
FT                 LESKAQDDHHSLFALAVAQFQTVLNQNWIQTLSDCRQSLLPPFIVSPKMLR
FT                 RDLRVLQRKILQHNRELSIPSSDLEDVFRYPLATCLFSPNKVVATVRIPLV
FT                 SLNTTYEMKRIQSLPFLFNDDVCQVKIDVNYVALSKHRIIPITPTISLNCD
FT                 PTTNALCLLPRFDPPVIPEHNCIRALLKSAPISEINQNCHLSCTKLYHPLI
FT                 LQLGPASFGIIAPNSTIKLYPTSRSAHKNITAPTIGLLEVHLSCSSRLYVD
FT                 SILVTPDFPCLRTQWDPSYHHLVPAPFTKLRTPIITNATHFAALDEIINQE
FT                 WHESIPHTNYSEPPLPATHHVPLEIHAAAYVSYSSSIILFLIVIIVIWITY
FT                 KLFCVPVPLIPGVHAYPVLETIEVTSDVLTVLFLLILILIGLTILRHLSKL
FT                 ANRTNPNPRLIYATPPTEPLPTRHDAHEMSTLPSAPPQTTVHQFDAFGNYN
FT                 "
XX
SQ   Sequence 8754 BP; 2338 A; 2537 C; 1542 G; 2335 T; 2 other;
     ttggtggacc tccagagtac tttttctcct ctgactgcca agaaattaac ttttacatac        60
     ataatctctt aaagtgcaaa ttatacaatt tattcaaaat taagtacaca tcctttcctg       120
     acaaacataa tgcaattttt ccacgacgat gcccctttgg aactttttca gtcgacgcac       180
     tgacccctca cctcccccgt caaacctgct cgaagctccc gaaagtgtat ttgtttctgg       240
     ccgacgtttt gaccatttac gtgaccctat tgaccctgac tctgaccgtg aacaccagat       300
     cgtcagcccc acagacagtt ctcagtgcgg tgttgtgact gatgactttg gagataccaa       360
     tagtgatcca cttccgctat cgcacctccc ctcggcccct gacccagatc attccgcgtc       420
     gagcatcctc cctggaaata taaatgataa tttgttaaac aaccaggtac gtcctccttc       480
     cgttactttt atacgcgaga atcagccagt gaacttcgta ccaaccccgg aaccttcgcg       540
     tcccccgaac cctcctcctc cacccccagc caacacattt ttcttcggac caagagcatt       600
     aaacccagac gcagtttttc ggtttccgtc ctctccatcc cccttcatcc gtccgccccc       660
     gccaaaccga cctccagttc ctcctcccac tccagcagcc gccaccgcca acatggccgc       720
     gaggaatttt tttaccggta gccctccaca accagctcct ctggttaata ttaatctcga       780
     aatgccaaaa tatggacatg aactatccaa gctcggactt cgacttttta ttcagcgttt       840
     ccagcgctgg gcggaagcaa aacgcttaac tgttcctcaa gccaaattaa ctcttccctt       900
     ggctttctcc aatgccactg cccaacatta tttcatgatc aatttcgcgg aacaagacaa       960
     tccagccatt gactgggcta cctttattaa caattttctg accaaatgcc caatggaggt      1020
     tgatgatcat acgtccgtcc tggacctctt aaagtcccca aaaccagagc tcgagaaagc      1080
     atcggtctac ttgcaacgac ttcgcgctgc aatgtctgag gaatacacac gccatgcaga      1140
     accagatatc attcgactcc ttatggacaa tttggaccct tccctacgtc aattcctcga      1200
     gtgcaaagga cctcctttga cctatggtga cttagtgtca cttgtgaagc attatgaaga      1260
     ccgtggcctg cagaaaacac tgacccctca actccaaccg cccgtaacga ttatctcccc      1320
     aaccgctccc cctcaatctg ttggactcga cgcattcgct ggcctccacc aggcccccgt      1380
     aaccccacta gctccgccca cggctcagcc taagcccgtg aataatgcaa ctgacggagg      1440
     actgtcactc ggagtgaatt tgaccaatgt taagaatatg caaggtctgc ttaatcacct      1500
     tagcgatcta caagctgcta tcatgcgact taatgtgtcg ccctcccaaa atcacggctc      1560
     aagatctcgc ccagatcagt cccaggataa tcgtgcgcct cgtcctaacg gacaacgccc      1620
     ctcatttgaa tgttactact gcggcatccg cggacataga attatagagt gtcgcaagaa      1680
     aatgcgtggt gatgatggcc ttcaacttaa cggccaaggg cgtggtcgca atggtgggta      1740
     tcgtaataac gatacctccg gtgctggcta ccgccgcgat aaccgccgcc gcgacgactc      1800
     tcctcgtgac caccgccgtc gcaatgacaa ccgtggctac cgtcgccgag atgactcccc      1860
     ccgcgatcag cgtcgcaatt cagactttca gcaacgccgc catgatgaat ctccccgtcg      1920
     ccgtgacaac ttccatcata atactacgga tcgtgacgac acgcgacgcg aaaaccatca      1980
     gtgggatgag cgttcaacgc gtacccctcc cggttcaccg cccccgtcgg gaaacgcccg      2040
     gctttgggca gattgatctg cccaccatcc ctgaagcctt taaaatctat tctacgtcca      2100
     tcgtccccct cccttgaccc tgctggaccg cgacatgtca cctttaacca aaatacgatt      2160
     gacttacgca tcaacctaca agatttctct gctaatcatg gcccagtaac aatcgacact      2220
     tttatcaata atcaacgaat cactgcaaca gtcgataatg gtgctaaagc ctcaatcatc      2280
     acagaagccc ttgctgttgg tttaccccgg attaacccaa atttacctta ccgactgtcg      2340
     gattttggca atcatacaat tagagattgc ggcctggtca ttctacctct caaaattggc      2400
     acccaacaag tgacataccc gtttttcgtc gttccctcat caccatgtcc tcttctcctt      2460
     gggcatgatt ttcaagaaca tttccttctg tccagcaacg aatcctttcg ctgtttgatg      2520
     tctcctatcc ttggttccgt cccgtataca agcgccccgc aacgattatt ccattcctgc      2580
     gataacaaag aaattatgca atcactaaac agaaatatgg acatgaaatt acttgatgcg      2640
     tctcagcgga ctcccgcgac acaaccagaa caacccccca aaccccaacc acttctgcca      2700
     tccctaacaa gttcaccagc agcctcgggg ccctcaccgc caccaccacc gccattacca      2760
     tcagccctac tttcaccacc accagccgca ctttctccac caccggcagc tgcagctgaa      2820
     ctttcaccgc caccttttct tatggatctg accaaactca aaatcaatcc caacatttcg      2880
     cctcctacga gagccaagtt gctttctctg atcacggaat ttaagcatat tttttcatgg      2940
     gacccaacca aattagggcg aaccgaccgt gtagaattcg atattgacac cggagatcat      3000
     cctcccatta gaatgcaaca atttaatcac ccagaaaaga ttcacagaga catcaaaagt      3060
     cacgtcgaca aacttttagc ccaaggaatt gtacgtccca tccgtgggtc atggtcctct      3120
     ccttgctttt tcgtcccgaa aaaggatgac gacggcaacc tgacctctca aagatttacg      3180
     gtagactaca ggtcccttaa ccgtattacc aaaaagatcc agtggccaca aactcgcatt      3240
     gatgatattt ttcagtccct gcgtggcaag aaatatttca ccagtctcga ctttacctca      3300
     ggctactacc aggtacctat gactcctgaa gcccaggaga aagcaacttt tgtgacccgt      3360
     gagggtacct ttgcccccac cgttcttcca tttggggtct caaatggccc cgcccgattc      3420
     gccgagctcc tcgatgaagt actttccggc cttaagggtg aagtttgcca gaattttttt      3480
     gacgacatag tttccgctgg agcaaccgaa gaagaagcat tggaaaaatt acgattaatt      3540
     tttgaacgaa ttgccgccga agggctcact cttaagccat ataaatgtga ctttctccaa      3600
     gacgaaataa atttactcgg tttttctctc tccgcmatgg ggacaaaacc cgatgagaag      3660
     aaattacgtg gtgtgtccca gctaaaaccc cccaccaccg gacacaaagt gaagaaacta      3720
     gtagcattct tcagttattt tcgcaaatat ataccaaatt tttcccgcat tgtccacccg      3780
     ttacaatgtt tatcaaccat ccgagggaam attacgtgga ctgaagagca ccaagctgcc      3840
     ttcgacacgg tcattgcacg actgttgtca cgaccagtac taagattatt tgaccctgcc      3900
     cttcctaccc tgttagaaac cgacgcctct tcttatggac taggagccgg acttttccaa      3960
     ttctatgagg gcgagaaaca tccggtagca tttatctcac gaactctttc cgtggctgag      4020
     aaacgctatc cctcagtcat gttggaactc acagccatct gttgggccct gaaacgcctg      4080
     cgacccctca tttatggtgt ccccctttcc atcgccacag actgccacgg gatttgctgg      4140
     cttctccaag ggtcaaaaaa agagctcaac tctcgactgt caagtatggt tgtttgtcta      4200
     atggattata caatagttga aattcgccat gtgagtggca agaaacatga atgtgccgat      4260
     ttcctcagtc gctatccgac tgaagatttt caaccaaatc gtgatgagct tgatgacctc      4320
     cctattctga caattggctc tcttaatttg atgtccagtc aaggtgacga ccctgaacta      4380
     gccataatta tcaacaaact gaaattagga caagatacaa aaatcaatga gcatttcaca      4440
     ctaaaagatg acgtactatt taaacgtgat aaccaatata accgtctaac cctggttatt      4500
     ccgtcaaaac tcattccttc cgtcctagat gagtgtcacg acagcccatt ttccggacac      4560
     atggggttta caaaaacgta cgacagaatc aagcagcgat attggtttcc tggtatgcgt      4620
     cgtcaaataa tgcgatatgt agccacctgt tccaaatgcc agtttcggaa atcacccaga      4680
     tctaaaccca atggactttt ccaatgcata aaagtgccaa aaaatgcttt tcaacgtgtt      4740
     caaatagacg tggctggccc atttcctgcc agtaaatcca acaaaaaata catcattacc      4800
     gcatcatgtt acctgaccaa atggctcgaa actgaagctg tcaaatctgc tcaaactgag      4860
     gacattatca actttttggt gaaactaata tgccgccacg gtgtgcctgc tatcctccaa      4920
     tctgataaag gtacaatttt tacctctgat ttattatcgc aactttcttc cgccttgggc      4980
     attaagcact tgctctccac cgcctaccat ccgcaaagtc aaggtcaagt agaacgaagc      5040
     catgcagttc taaatgactg tattcaaatt tatctaaccg attctctcaa atcacactct      5100
     gattgggaca catggctgcc tcatattaca tttgccatta attcctccaa gcacaccacg      5160
     actggtttta gcccgttcga attactctac ggccgtgagg tggtccttcc cacggaatcc      5220
     gcatttattg ctgaggaata cattagtttg gagaaattcc tttctcacat aagatctgct      5280
     cggacacttg cgtgggaccg aatccaacac tctcaagagg ttgcaaaatt ttattatgac      5340
     aaaaaacgca agcatattga atttcctata ggcagtcaag ttctctgccg taagtacatc      5400
     caaaagaagg gtctcgctgc taaattaatg cagtattggt tcggcccgta catgattaag      5460
     cgaaaacttt ctgacgttaa ttacataatt tccgctacga tgtctaatgg tcgtgttatc      5520
     acggagaccg cccatgttga gaaactgaaa ctatacaact ctaggacgac tgatgagacc      5580
     accgtcagca cattctcccc ttctgctctg gacatttccc acgatgcaag tacagaccct      5640
     cctcagagtg cagaccacca agataatgct gactatgctg acgaggaagt tttatcttct      5700
     ctagacccac cacattcctc ccgatcctca cctggctctc cgactccaac ccccagtgac      5760
     acactgacct cgcaacaagc tcagttgccc acaaataatt ttctcttcga ctctgatttc      5820
     cctcaactct ctccacaagc acatacatac gaatctacgc tgtcgcaatc tacgccaccg      5880
     gttctttcac cagttttccc acataacaaa caaccaacac ctgcacacca atacaatctt      5940
     cgttcacgaa agaaagttac atttcaagag ggatcatgaa tcctttgtgc ctactttgtg      6000
     ttgcacttgt ttctggtgct cgcctgactg gtgcgaaaga ccaactttca acaacaatta      6060
     cgcgactttc aactggaatt ttgacaacga atgtcaaaat tattccctat gaatctaccg      6120
     ttcctctgat ttacgaaatg gatctccctg acctcgacca atggacccgc ctcttgacac      6180
     cgcttaacga cacagacatc ggccaaattt tgaatgccac ccactctctt gcacttcgac      6240
     tcctcccaat tttcccgtcc cccagttcaa cgcgtcaccg ccgttccata gaaatcattg      6300
     gcgactttta taattggtgc tgtggcgtgg cccaacaaaa aactgtcgac cgcatgcagc      6360
     ttaacgagca ccaccttgat aatttcaccc tacaacttca atcggccctt acagcagagc      6420
     attccttcac agttgagtcc actaaaattt ttaacaaaga ttttcaggcc ctcgagaaag      6480
     cccttagcga aaccgaccga gtagttcaca atgagttacg cgatatcgcc aatgaagaag      6540
     agagactaga atccaaagcc caggatgacc accattccct ttttgccctg gccgtcgccc      6600
     aatttcagac agtactgaac caaaactgga tccagaccct tagcgactgc aggcagtcac      6660
     tactcccacc ctttattgtt agcccgaaga tgctgcgacg cgacctacga gtcctgcaac      6720
     ggaagatact tcaacataac agagagctca gcatcccctc cagcgacttg gaggacgttt      6780
     ttcgctatcc cttagcgact tgtttgttta gtccgaacaa agtggttgcg actgttcgca      6840
     tccccctagt gagcctgaat acgacgtacg aaatgaaacg aatccaatcc ctgccttttt      6900
     tattcaacga tgacgtctgt caagtgaaaa tcgatgtgaa ttacgttgcc ctgtccaaac      6960
     atcgtattat ccccatcacg ccgaccatat cactcaactg tgacccgaca acaaatgctc      7020
     tctgcttgct gccacgtttc gatcctcctg ttattcctga acataattgc attcgagccc      7080
     tcctaaaaag tgcccccatc tcagaaatca accaaaactg ccacctctca tgcactaagc      7140
     tgtaccaccc actaattctg cagttgggac cagccagctt cggaatcatt gccccaaatt      7200
     ccaccatcaa attatatcca acttcacgaa gtgcccacaa gaatattaca gccccgacaa      7260
     ttggcctttt ggaagtgcac ctctcttgct ccagccgact ctacgtggac tctattctgg      7320
     tgacgcccga cttcccttgc ctcagaaccc agtgggatcc gtcttaccat catcttgttc      7380
     ccgccccctt caccaaatta cgcaccccca tcatcaccaa tgctactcac tttgctgccc      7440
     tggacgagat tatcaaccaa gaatggcatg aatcaattcc tcacacaaac tattccgagc      7500
     caccacttcc tgccacccat cacgtgccct tggaaattca tgcagccgcc tacgtgtcat      7560
     acagttcttc aattatttta tttttgattg taattattgt aatttggatc acttataaat      7620
     tgttctgtgt tccagtcccc ctaattcctg gagtccacgc ctaccctgtc cttgaaacca      7680
     tcgaagtcac gtcggatgtc cttactgtcc ttttcctcct cattttaatc ctgattggcc      7740
     taaccatttt acgccatctt tctaaattag ctaatcgcac caatccaaat ccccgactta      7800
     tctacgctac tccacctacc gagccactgc cgacacgtca cgacgcccac gagatgtcaa      7860
     ccttgcccag tgctccgccc caaactacgg tccaccagtt cgatgccttc ggaaattata      7920
     actaagttca ttcattatta ttaattcaca aaaaaaccat cgatttctta ttattaatat      7980
     caaacaatat ttctgtatca cgatttattc atttgagtaa taattttgct tcaatatttg      8040
     tagttctgct taccgggagt gaggcagtcg gtggatgacg tcacccagca atttccaagt      8100
     ttccagtaat ttttccaagt tcccgagacc acccacccca cccacagcca cacccccggt      8160
     gacctttgac ctctgaggag ggcccttaaa tccccccttc cccccagcct taagggctct      8220
     ccccccaagg ggtaccctta gatgttatca aacccggaat ctgcaattta tcaacataaa      8280
     aattagtttt atagtcattt tactgcttgt cgatactaga tatacattta tttttaacca      8340
     atttcatgat tttcacaatt tatttctaac ataattccca aaatgtccaa aaatttcaaa      8400
     aaaaaaatat atatgtattt agtacttacc tttgctgtga atccgcttcc tgacataatt      8460
     tttgatgagg cagatatgta gcactttatt ttatcaattt gattgtattt tagaacacaa      8520
     ttttgttagt taattcttca aaatttaaaa atttagtgaa tttttcctcg cctttgcctc      8580
     gttgtgtagt tgtgtagaat aatggcggac gttattccgc ctctcctttg tcccgagtga      8640
     tcgtactcgt cactcgtatg ctttgttcag tttagtaaat tcgtcgtaat cactcgttgt      8700
     taagttagcg tcactactct ttttcaggag aaaaagtctc ctgcaagagg gtag            8754
//
ID   Gypsy-4_FoCa-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-141
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2579-2579 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 141 BP; 50 A; 31 C; 15 G; 45 T; 0 other;
     tgttaggtat atacgtagtg ttaggtacat acatagtatg caaaatgcaa tgtaataatg        60
     caaccacaat tattattaat aaagccttcc taaactacac atctctcctc tctcatctct       120
     cctctaaatg catacataac a                                                 141
//
ID   Gypsy-4_HeAr-I repbase;    DNA;    INV; 5011 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5011
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5554-5554 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..4569
FT                 /product="Gypsy-4_HeAr-I_1p"
FT                 /note="zinc finger, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPRKVRTDANVEDAQSSSDEEAPRPSPTLMSGDQLA
FT                 SFLTAFAKSQAEANRQLVESLMASHAIGSARPSPTPSSTCKTGNMSKCTAR
FT                 FDGHSRDPEVVEAFIDSVEIYKECASVSDDLALRGLPMLLHGEAAVWFRGV
FT                 KASLTSWDDALAKLRAMFGVPRPPHKVFRDMFAAEQSEERTEVFVGRLRAH
FT                 MSRLPYSLDERIKLDIVYGLLNKRIRKRVTRESIEDLDQLIEKSRAVEDSL
FT                 SEKEMTTSSSSSNNNTQSQLARAAPARPSAAGLRAQHAAAPMQTPYSAGKG
FT                 ASKPPALSSGAGAQPSSSQLQRNTSPSVSAASDSVNKKSFCVYCKCRGHTR
FT                 ESCPKRDSKDLFCYGCGEKGFVRSNCPSCKNVSTCNVDVNNSVSQPQQNVF
FT                 YSLNTVLSECNVSCESKNNIIISQGRPILNIEILGHSGSALIDTAARRSIA
FT                 GSTLYALLLRLGNTFVSKTMSVKLADGTIRNSTVLFTCVNVKCMSLCIPIE
FT                 FIVFPDACNNETLLGIDFIRQSKIVLNFSNMTWFTADRPQVIHPLLTESSR
FT                 EAVECASVNLLREDEGTLLTLDQRSDLENLLGEYSDIFDQVGEPTPFAEHH
FT                 IDTGDHPPIAVPPYRVTPAKKEVMRIELDKMLAEGVIEECESAWSAPTVLV
FT                 PKSNGGYRFCVDYRRLNAVTKTDAYPMPRIDELLQSTKRGCVMSTCDLRSG
FT                 YWQCKVKDKDKTAFVTPFGTYRFLRMPFGLKNAPATFQRLIDRFRAGSSLN
FT                 DVTVLTYLDDILVISESYTRHLSDLRAVFDRLRVFKLRANRDKCVFAREKV
FT                 RYLGHVISQEGISPDEDKVHAVLSMREPTCLQQLRTFLQTCSWFRKFIPEF
FT                 AKVAEPLTRLTKKSQAWQWSLEQGKAFDTLKKLLTTAPILVQADYTRPFIL
FT                 RTDASNYALGAALLQGESPHQEHPIEYASRLLTPAEQNYSTTEREALAVVW
FT                 AVERFRGYIDGHQVHVMSDHQPLKWLFSLKSPSGRLVRWAMKLQAFDLRVE
FT                 YAPGKVNVIADTLSRPVLEDGSAPECDICPVVVDVPRWDATSTREAQLADA
FT                 EVAKIILDLEGKDDLSVTRWSERGYLLNQGVLYRYVPDTDSEEPQLVVPES
FT                 LRSTVMFECHDSPTAAHGGIDRTLHRISQRFYFPGMRRFVTDYLKTCVECQ
FT                 RFKPSNVKPAGLLQTPVPAQRFETVATDLFGPLPKGPQGERWILIVEDTTS
FT                 KWVEVFALTEATAETCAKTLVNEVFMRFGLPRRIISDNGVQFVADVMQKAM
FT                 FVLGIKQSLVPLYHPEANPVERKNRDLKAQLAILVEGRHQNWPEVLPFVRF
FT                 AFNSSVTRSTEHTPAYLTFGRELRSPLTVQADLRTVVETENFVPQITPYLR
FT                 KLADTISTAKENLERHQDVRKAYADKTRSSPVKFLEGDLVLMKTHVLSSTA
FT                 KGITSKFTPKRDGPYVISKKVSPTTYLLAHSKTGEVFGKYHVSDLRPYHAR
FT                 EGECPEPMVPKRGRGRPRKGVT"
XX
SQ   Sequence 5011 BP; 1187 A; 1185 C; 1278 G; 1361 T; 0 other;
     agtggcgctt ccaactagtg gccgtgaatc cgctagccag tttaaaccgg ttctttgccg        60
     atcgacttag gacatttagt gttcgcgttt atacctgcgt cgctgaaaat gccgccacgc       120
     aaagtacgta ccgacgctaa tgtggaggac gcgcaatcca gctcggatga agaagcaccg       180
     agaccgtcgc caacgctcat gtctggggac cagttggcct cgttccttac cgccttcgcg       240
     aaatctcagg cggaagcgaa ccggcagctc gtcgaatccc tcatggcatc gcacgcgata       300
     ggatcagcgc gaccctcacc gacgccctcg tcgacatgca agaccggcaa catgtccaag       360
     tgtacggcac gcttcgacgg gcatagcaga gatccagaag tcgtagaagc gtttatcgac       420
     tccgtggaaa tctacaaaga gtgtgcatct gtctccgatg acctggcact ccgtggtctc       480
     ccgatgcttc tacatggcga ggcagctgtg tggttccgcg gcgtcaaggc atcgcttacg       540
     tcgtgggatg acgcccttgc caagctgcgg gcgatgtttg gtgttcctcg tccgccacat       600
     aaggtattcc gggatatgtt cgccgcggaa caaagtgaag aacggacgga ggtgttcgtc       660
     ggtcgtctcc gcgcacatat gagcaggtta ccttacagtc tagacgaacg aatcaagctc       720
     gacatagttt acggtttgtt aaacaaacgc attcgtaaac gcgtaacgcg cgagtctatt       780
     gaggacctcg atcaattaat cgaaaagtcg agagccgtcg aagattcgct ctccgaaaaa       840
     gagatgacaa cgtcgtcaag ttcgagtaac aataacacgc agtcacagct cgcacgagca       900
     gcgccagcac gacccagcgc ggccggcttg cgggctcagc acgcggccgc tccgatgcag       960
     acgccgtatt cggcggggaa gggcgcgtcg aagccgccag cgctgtccag cggcgcgggg      1020
     gcacagccgt cgtcgtcgca gctccagcgt aatacttcgc cgagtgttag tgccgcgagt      1080
     gatagtgtaa acaaaaagtc gttttgcgtg tattgtaagt gtcgtggtca tacgcgtgag      1140
     tcttgcccaa aaagagactc taaagactta ttctgttatg gttgtggcga gaaagggttt      1200
     gttagatcaa attgtccgtc gtgtaaaaat gtttcaactt gtaatgttga tgttaataac      1260
     tcagtttcac aaccacaaca aaatgttttc tactcactta acacggtact cagtgagtgt      1320
     aatgtaagct gtgagagtaa gaataatatt attatcagcc aaggccgacc gattttaaat      1380
     attgaaattt tagggcacag tggctcagcg cttattgata ccgccgcccg acgtagtatc      1440
     gcgggttcga ccctgtatgc cttactttta cgattgggta atacatttgt ttcaaaaacc      1500
     atgtcggtga aactggctga tggtactatt agaaatagta ccgttttgtt tacatgtgtg      1560
     aatgtaaaat gtatgtcact gtgtatacct attgaattta ttgtgttccc cgatgcatgt      1620
     aataacgaaa cccttttggg aatagatttt attaggcagt ctaagattgt tttaaatttt      1680
     agtaatatga cgtggttcac agctgatcgg cctcaggtca ttcaccccct gctcacagag      1740
     agttcacgcg aggcggtgga atgtgcttcg gtcaacctgc tgcgggagga cgagggcaca      1800
     ctattgacct tggatcagcg ttctgacctt gaaaatttat tgggtgagta ttctgatatt      1860
     tttgatcagg tgggggaacc aacgccattt gccgagcatc acatcgacac cggtgaccat      1920
     cctcctatcg ccgtgcctcc atacagggtc acgccggcga agaaggaggt catgcgaata      1980
     gaactggaca agatgctcgc agaaggtgtc atcgaggagt gcgagtctgc ctggtctgca      2040
     cctactgttt tggtaccgaa gtctaacggt gggtataggt tttgtgtaga ttacaggaga      2100
     ctcaacgctg tcactaagac agacgcgtat cctatgccgc gtattgatga gctgctgcag      2160
     tccactaaga gaggttgtgt gatgagcacc tgtgaccttc ggagtggcta ttggcaatgc      2220
     aaggtcaagg ataaggataa aaccgcgttt gtcacgccgt ttggtacgta ccgattctta      2280
     cgtatgccct ttggactcaa gaatgcaccg gctacgttcc agaggcttat tgaccggttc      2340
     cgtgcggggt cgtcacttaa tgacgtcacc gtactgacat atttagatga catcctagtg      2400
     atatcagagt cctatactcg tcacctttca gatctccgtg cagtatttga ccgtctccga      2460
     gtgtttaagc tccgtgcgaa tcgagacaag tgtgtattcg ccagagaaaa ggttaggtac      2520
     ttaggtcacg tgatctccca ggaaggtata tcaccggatg aagacaaggt acatgctgta      2580
     cttagtatga gggaacctac ctgcctccaa cagctgcgca ccttccttca aacatgctcc      2640
     tggttccgta agttcatacc agagtttgcg aaggtggccg agccgctgac ccgcctcact      2700
     aagaaatcac aggcgtggca atggagtcta gagcaaggta aggcttttga tactcttaag      2760
     aagttgttaa ctacggcacc tatactagtg caagctgact acacgaggcc attcatattg      2820
     cgaaccgacg ccagtaatta tgccctaggc gctgccttac tccaggggga gtcaccgcat      2880
     caagaacatc cgatcgagta tgccagccgt ctgctcacgc cagccgagca gaattattct      2940
     actacggaga gagaggctct cgccgttgtc tgggctgtgg aacggttccg cggttacatt      3000
     gatggtcatc aggtccacgt gatgtctgat caccaacccc tgaagtggct cttttctctc      3060
     aagtcaccta gtggaaggtt agttcgctgg gccatgaagc tacaagcttt tgatctacgt      3120
     gtcgagtatg caccaggtaa agttaatgtt attgccgaca cgcttagccg ccccgtgttg      3180
     gaagacggtt ctgcacctga gtgtgacatc tgcccagttg tcgtggatgt tccacgctgg      3240
     gatgccacct caactcggga ggcgcagtta gcagatgctg aagtcgccaa gatcatcctg      3300
     gacttggaag gtaaggatga cctttctgtt actcgttggt ccgagcgagg ttacctattg      3360
     aatcaaggtg ttttgtatcg gtacgtcccg gatactgatt cggaggagcc tcagctcgtt      3420
     gtcccggaga gcctgcggag cacagtcatg ttcgagtgcc atgactcgcc caccgccgct      3480
     catggtggaa ttgataggac tttacatcgt atctcgcaaa ggttctattt ccccgggatg      3540
     agaaggtttg ttactgacta tttgaagacg tgtgtcgaat gtcaacgatt caagccgtcg      3600
     aatgtcaagc ctgctggtct gctacaaact ccagttccag ctcagaggtt tgaaactgtt      3660
     gcaaccgacc tcttcggtcc gttgcctaaa ggtcctcaag gtgagagatg gatcctgata      3720
     gtggaggata ccactagtaa atgggtggag gttttcgctc ttactgaagc tacagcggag      3780
     acatgtgcca aaactttggt taatgaagtc tttatgaggt ttggtcttcc taggcgtatt      3840
     atctcagaca acggagtgca gttcgtagca gatgttatgc agaaggctat gtttgtctta      3900
     ggtataaagc aaagccttgt gcctctctac caccctgaag ctaatccagt tgagaggaag      3960
     aaccgagacc tcaaggctca gctcgccatc ttggtggaag gtcgtcacca gaattggccc      4020
     gaggtattac cttttgtacg gtttgctttt aatagttccg ttacccggtc taccgagcac      4080
     acccctgctt atcttacctt cggtcgtgag ctgcggtctc ctctgacagt tcaagctgac      4140
     ctgagaactg tggtcgaaac tgaaaacttt gtaccacaaa tcacacctta cctgcggaaa      4200
     ctcgcggata ccatctcgac agccaaggag aacctcgaac gtcatcagga tgtacgtaaa      4260
     gcatacgctg ataaaactcg gtcttcgcct gtaaagtttc ttgagggtga cttggtgttg      4320
     atgaagactc atgtcctcag cagcactgct aagggtatca cgtccaagtt cactccgaaa      4380
     cgggacggac cctacgttat atctaaaaag gtgagtccta ccacttacct cctagctcat      4440
     agtaagacgg gggaagtttt tggtaagtac catgtgtctg acttacgccc atatcatgcg      4500
     agggagggtg agtgtcctga gccgatggtg cctaagcgtg gtaggggtag accgcggaag      4560
     ggtgtcacct aactatatta cttaccttag gtggttgttc agctgagttg ttacttacct      4620
     tgtgttgttt tccttataag tttacttacc ttgtgttgtt ttccttataa gtttacttac      4680
     cttgtgttgt tttccttata agtttactta ccttgtgttg ttttccttat aagtttactt      4740
     accttgtgtt gttttcctta taagtttact taccttgtgt tgtttacctt ataagtttac      4800
     ttaccttgta ttggttacct ttcaagttta catatcttgt attgtttacc ttttaagtct      4860
     actgtattgt tatttacctt ataggctata taggcttgct taccttgcaa tgtttaactt      4920
     ataatgttac ttaccttgtg atgtaactta gagcctcgcg ttactgttgt tcgaccagtc      4980
     gggggaccct ccctggtcta aagggggagt g                                     5011
//
ID   Gypsy-4_HeAr-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-317
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5542-5542 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 317 BP; 71 A; 80 C; 83 G; 83 T; 0 other;
     tgtaacgcgc gcctactttt cgtggtcgag tccatggcca tataaggcca tcgcatgatc        60
     accgagccga ccaatacgtg gccggccggc agaggggtgc ggggagcgag ggcctactct       120
     cacgagcggg gacgctcgct gagtcgccag tccggcgcac gacgccatat atttcgcacg       180
     ctgtgttata gctctcgcga ccgtggctat gtagttaagt acgacgtgtg tttgtgaact       240
     acctatgtaa ctaattacca tgtctgtatt ctaattacaa taaactttct ataaccaaca       300
     atgtgtttgt tgttata                                                      317
//
ID   Gypsy-4_HMM-I repbase;    DNA;    INV; 3969 BP.
XX
AC   CAEZ01005229;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_HMM_;
KW   Gypsy-4_HMM-LTR; Gypsy-4_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3969
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01005229; Positions   20318   24286.
XX
CC   Positions [1455-1913] - Reverse transcriptase
CC   Positions [2991-3371] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..3371
FT                 /product="Gypsy-4_HMM-I_1p"
FT                 /translation="MATNIANIVFPGHFNPKTDKWCDYKEQLQCALDAAGV
FT                 SESEFNNKGRSLFLSQCGKETYSLIASLLAPARPTSVEFNEILSVLDKFFE
FT                 PEVNEILESDKFHKRRQSPDETVQDFVAAISLLGAKCNFTDLKRQLRDRLV
FT                 LGIRDERLRRDLLKTKELKYEAAVQTCLNYQATFPDLYGNTAGLKQTLSDV
FT                 TVPMEIGRIKSNECRHCARVHKSGERCTFSKARCFYCKRFGHIAAVCNKRP
FT                 NKVHQTSDEAQNAAIGGEGFSTENMMGIYVCADNYRPPIVADVTLDDVKLS
FT                 MEVDSGASRTIISEETYHKLWLTPPPLNSTNLKLMTWTHDPLKVLGIANVR
FT                 AILGDKAAQCELVVVSGRGPSLLGRNWFQALGLQISGLCWSAEQIRPYKEE
FT                 FPDLFMDGLGMYKGPEVSLNVKPNITPRFLKARPVPFPLKHQVEDELQRLV
FT                 KEGVLTPVRFSKWATPLRIVKKDDGSLRICGDYRSTVNAAIDTDTYPLPTS
FT                 TEAFVKLSGGRVFTKLDLKQAYTQLKVDEETAMLLTLNTPIGLMKVNRLAF
FT                 GVSAAPGIFQRVMSSALAGMDGVACLLDDIAIAGKTLHEHNQRLRNVLLKL
FT                 QEMGLRLNLKKCVFAADSITFLGHMIDAEGLHPSPAKVEEIQEKSAPTNKE
FT                 TLRAFLGLYNFYEKFLPNKATVLEPLYRLLESKRPWGWSKKEQEAFETAKR
FT                 LLSSDRTLVGYDINRELLLDSSEYGLGAIIAHVMDDGSERPIMMASRTMQA
FT                 HERRYGQIDKEALAIIFGLTKFHDYLAGRQFSIVTDHKPLIGFFNREKPIP
FT                 DQISPRMLRWSLKLGCYDYDIKYRPGKLIGNADALSRWTAPDTSTATTDMV
FT                 RDVLLLEEQPRGWNLDVRKIAELTKKDPILRRVSFHVLHGWPPRNNDPVLQ
FT                 PYWTRREALSHNKECLLWCNRVIIPAALQDQVLKLLHAPHAGIVQTKAYAR
FT                 GYVWWVGMDNQIERTVSACELCQAVRNNPPADPQTWITSDKAWNRVHIDFA
FT                 GPFQGKTFLVLIDSYSKWFEAEIIPSMSASTVVVVLRKIFAAQGLPEVLVS
FT                 DNGRAFSSDEFNSFLSKNGIRHLYSPPYHPATNGQIERAIQTFKNKLKKNV
FT                 VV"
XX
SQ   Sequence 3969 BP; 1160 A; 777 C; 993 G; 1039 T; 0 other;
     ttttattggc gacgaggaaa attaaataga tttttgtgga aatggcgact aatatcgcta        60
     atatagtatt tccgggacat tttaacccca agacagacaa gtggtgcgat tataaagaac       120
     agttgcagtg cgctctcgac gccgcgggtg tttccgaaag tgaatttaat aataagggac       180
     gttctctgtt tctatcacag tgcggaaaag agacttactc gttgattgca tcattgttag       240
     cacccgcgag accgactagc gtggaattta atgaaattct tagtgtactg gacaaatttt       300
     tcgaacccga ggttaacgaa atcctagaaa gtgataaatt tcataaacgc cggcagtcac       360
     ctgatgagac cgtacaggat tttgtggctg ctatcagttt attgggcgct aaatgcaatt       420
     tcacagactt aaagcgccaa ctgagagacc gactagtatt gggtatacga gacgagcgct       480
     tgcgacggga tttgttgaag acgaaggagc tgaagtacga ggcggcagtt cagacgtgtc       540
     tcaactatca agcgacgttt ccggatttat acggcaatac tgcgggactg aagcaaactc       600
     tgtctgacgt cacagtaccg atggaaatcg gtagaattaa atcgaacgag tgtcggcatt       660
     gtgctcgggt gcacaagtcg ggcgagcggt gcacgttttc gaaggcaaga tgcttttact       720
     gtaaacgttt tggacacatc gcagcggttt gtaataagag acctaacaag gtgcaccaga       780
     cgagtgatga ggcacagaac gccgctattg gcggagaagg gttttcaact gaaaacatga       840
     tgggtattta cgtttgtgct gataattata gacctccaat agtagcagat gttactttag       900
     atgacgtcaa gctgtcaatg gaagtggact ctggagcttc gaggacaata atatctgagg       960
     agacgtatca caaactgtgg ctcacccccc cgcctttgaa ttctaccaat ttaaaactca      1020
     tgacgtggac tcatgacccc ttgaaagtgt taggtattgc gaatgtacgt gcaatactcg      1080
     gagacaaggc agcccaatgt gagctcgtgg tggtctccgg tcgtggacca agcctgttgg      1140
     ggagaaactg gtttcaggca ttaggactgc agatttcagg cctgtgttgg tccgccgagc      1200
     aaattaggcc ttataaagaa gaattccctg atttatttat ggatggtcta gggatgtaca      1260
     aagggccgga agtttcctta aatgttaagc caaatataac gccacgtttt ttgaaagcac      1320
     gccccgttcc atttccattg aaacatcagg ttgaggatga attgcaacgc ctggtgaaag      1380
     aaggggtttt aacacctgtc agattttcga aatgggccac gcccttaaga attgtcaaaa      1440
     aagatgatgg ctcattacgt atctgtgggg attatcgttc aacggtaaat gcagctatag      1500
     atacggatac gtacccccta ccaacatcaa ctgaggcttt cgttaaactt agtggagggc      1560
     gtgtatttac taaattggat ctaaaacaag cctatactca attaaaggta gatgaagaaa      1620
     ctgctatgct cttgacactc aacacaccta ttggtctgat gaaggtgaat aggctagctt      1680
     tcggtgtgag tgcagccccc ggtatttttc agagagtgat gtcgtctgcc ctcgcgggga      1740
     tggatggagt ggcatgttta ttggacgaca ttgccatagc aggaaagaca ttacatgaac      1800
     acaatcaacg cctaagaaat gtgttattga aacttcaaga gatgggtttg cgtcttaact      1860
     taaagaaatg tgtgtttgca gctgatagta ttacgttttt gggacatatg attgatgcag      1920
     aagggctgca cccctcccct gcaaaggtgg aagagataca agaaaaatcg gctccaacta      1980
     acaaagaaac tttaagggct tttctaggct tatataactt ttatgaaaaa tttttgccaa      2040
     acaaggcaac tgtgttggaa cctttatatc gcttgcttga gtcaaagagg ccttggggat      2100
     ggagtaaaaa ggaacaggaa gcatttgaga cggccaagag gttactgtcg tcggatcgaa      2160
     cgttggttgg ctacgatatc aacagagaat tgctccttga ttcgtcggag tatggtctgg      2220
     gggctatcat tgcacatgtc atggacgatg gttcagaaag gccgataatg atggcatcac      2280
     gaactatgca agcgcatgaa agaagatatg gccaaatcga taaggaggca ctggctataa      2340
     tttttggatt gacaaaattt catgactact tagcgggccg gcagttctct attgtgacgg      2400
     atcacaagcc gttgataggt tttttcaacc gggagaaacc tattccggat cagatttcac      2460
     cgagaatgtt gcgctggtct ttgaagctgg ggtgttacga ttatgacatt aaatatagac      2520
     cggggaagct gattggtaac gcagacgcgc ttagcaggtg gacagccccg gacacatcga      2580
     cagcgactac agacatggtt agagatgttt tacttttgga agagcagcct aggggttgga      2640
     atttggacgt gcgcaaaatt gctgaactca ccaagaagga tcctatattg agaagagttt      2700
     cgtttcatgt tttacatggt tggccaccgc gtaataacga ccctgtgctg caaccatact      2760
     ggacgcgaag agaggctctt tcacacaata aagagtgttt attgtggtgc aatagagtca      2820
     ttatacctgc ggctcttcaa gaccaggtac ttaaactatt acatgcccca catgcgggga      2880
     tcgtccagac aaaggcatat gctagagggt acgtatggtg ggtaggcatg gataaccaga      2940
     tcgaaagaac ggtgagtgcg tgtgaactat gccaggcagt cagaaataat ccaccagcag      3000
     acccacaaac gtggattacc tcagataaag cgtggaaccg tgttcacata gattttgcag      3060
     gaccattcca aggaaaaact tttcttgtgt tgattgatag ttacagcaaa tggtttgaag      3120
     ctgaaatcat accctcaatg agtgcatcca ctgttgtcgt agttttgagg aaaatatttg      3180
     ctgcacaggg acttccagag gttttagtgt cggacaatgg aagagcattt agctctgatg      3240
     aattcaattc attcttatct aaaaatggaa tcagacattt gtactcaccg ccgtatcatc      3300
     cggcaactaa cggacagatc gaacgtgcca ttcagacgtt caagaataaa ttaaagaaaa      3360
     atgtcgtcgt ctgaaatgcc ttggagtgag aaattgagta aagctttata ctatcttcgt      3420
     acggtaccaa acagcgtaac aaataaaacg cctgcagagt tattgaacgg tcgtagatat      3480
     aggacagcga tatcatctct ccacccggac tcagtaccct ctactactga gatgcaactg      3540
     gaggcagcgg cacacagaac acccgcacgc acctttgctg agggccaacc agtgctaata      3600
     cggaagtatg gtccaggtga gaagtggcaa agagctagtg tcgagatgat tgagggtcct      3660
     agctcctaca gggtgcgaac ggaagatggt gagttgcaac gtagacatgc tgaccagatc      3720
     ttagcacgta ctgtaacatc accagtaatt gatctggacc cgattgttta tgaccgtact      3780
     gcttgcagct caagatctgg aacagctaca ccggatatgc ctattgagat accaccacca      3840
     gaattgtggc cagatataat tggaatccca agcactgatt agattaatat tttgtaatta      3900
     attattttgt taactctttg attgtattgt aatgattatt tcaacatgta tgggtatggg      3960
     ggaaagata                                                              3969
//
ID   Gypsy-4_HMM-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   CAEZ01005229;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_HMM_;
KW   Gypsy-4_HMM-I; Gypsy-4_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-124
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01005229; Positions   20194   20317.
XX
SQ   Sequence 124 BP; 38 A; 11 C; 22 G; 53 T; 0 other;
     tgttattata tgaattatag tagtaacatt gtgtacctac attgacattt atattttata        60
     attgtagtgt ggggtacttt gaaaataaat gagttttgct tcatacttga aacttgtggt       120
     atca                                                                    124
//
ID   Gypsy-4_LH-I repbase;    DNA;    INV; 4438 BP.
XX
AC   ADOQ01003351;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_LH_;
KW   Gypsy-4_LH-LTR; Gypsy-4_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4438
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003351; Positions   17914   13477.
XX
CC   Positions [3573-4052] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..970
FT                 /product="Gypsy-4_LH-I_1p"
FT                 /translation="MEKHQYCVLTSLGTPDGRTFSIPDEHQNTNLHKELIT
FT                 SQVFGKIKNTLKKRNQFRKVWITLSENLARVYLDEEGNLQFEEQYLEEITE
FT                 KKVEKATASTPDETIKKLLEKVLEDKQQKSEIQNLNKIAKDFMIDKFDGKN
FT                 SNASQWINEFEKKCGRCMIEKDRKKIEILKFFLERSGADWYTCMILKFTVE
FT                 SEWSKWKKNFGETFGNKGWSPIRYAFTFRYQTGSLLDYALKKEKLLLQIRK
FT                 TMDTETLIDLIVIGLLNYVSGKIDRESLTETEELYNEISKLEHLVGRSNIE
FT                 KKGKIYSENK"
FT   CDS           1914..4190
FT                 /product="Gypsy-4_LH-I_2p"
FT                 /translation="MVDKYCGKRPYRCTIEDRKEIESQIGKLLKKGLIEQS
FT                 YSPFAAPVTLAYKKEEDRKSRLCIDFRELNKIVVPQAQPFPLIEDLMVKTV
FT                 NCKYFTTLDINSAFWSIPLRIQDRHKTAFVTQEGHFQWTCLPFGLKTSPAI
FT                 FQRILSNIIRKHKLADFAVNFIDDIMIFSKTFAEHITHLSKLLGAIRKKGF
FT                 RLKFSKCTFANNQAKYLGHIIENNSVKPLKDYLIAVKNFPVPVTRKNVRQF
FT                 LGKINFHHKFIPHMAITLEPLHNLLRKDVKFNWSKECQESFDEIKSRLCSE
FT                 PVLKIFDPDVPIDIYTDACLIGVGAVLKQKDKNGVSKPVAYFSKKLTEAQK
FT                 RKKAIYLECLAIKEAVKYWQHWLMGKEFIVYSDHKPLENMNLKAKMDEELG
FT                 DLTYYLSQYNFTVKYNPGKSNQEADCLSRNPVLQPYENTDEFLKIVNLINL
FT                 EDIQKDQNTNLDQRKKKNKLILKNGVYYTKTKRKEKIMLSEELSKKLIEDV
FT                 HKTYCHLGRTQMRNKITPFYTAINLIDNIKKICDSCGICIKNKTRRKSKYG
FT                 FMSHLGPARYPFEIVSIDTVGGFGGSRSIKKYLHLLVDHFTRYAYILTSKN
FT                 QNSNNFIKLIKNVTQSYKIDMVLTDQYPGINSKEFKEFLKQENIKIVFTAV
FT                 DAPFSNGLNERLNQTLVNKIRCKINENEKKVAWTTIAQKCVEAYNKTEHTI
FT                 TKFAPKYLLEGENVNILPHELKSTCTNEDLKKDRKLARKNTMQSHDYNKKK
FT                 FDRHRKEL"
XX
SQ   Sequence 4438 BP; 1887 A; 657 C; 785 G; 1109 T; 0 other;
     tttttgcgaa taattcaaaa aatggataga ctaaggttcg attttaaaat gagaggagcg        60
     ttagatggaa aaacatcaat actgtgtact aacctcacta ggcacaccag atggacgtac       120
     ttttagcatt ccagatgagc atcagaatac aaatctacac aaggaattga taacatcgca       180
     agtattcggt aaaataaaaa acacattgaa aaaaaggaat caatttagaa aagtgtggat       240
     taccttatcg gaaaatttag caagagtcta cttggatgaa gaaggaaatc tacaatttga       300
     agaacagtac ttggaagaaa ttacggaaaa aaaagtggaa aaagctacag caagcactcc       360
     agatgaaaca atcaagaaat tattggaaaa agttttagaa gataaacaac aaaaatctga       420
     aatccagaat ttgaacaaaa tagcaaaaga ttttatgatt gataaatttg atgggaaaaa       480
     ctcaaatgcc agccagtgga taaatgaatt tgaaaaaaaa tgtggacgtt gtatgataga       540
     aaaagacagg aaaaaaattg agattttgaa gtttttcctt gaaagatcgg gtgcagactg       600
     gtatacctgc atgattttaa aattcacagt agaatcagaa tggagcaagt ggaaaaaaaa       660
     ctttggtgaa acatttggaa ataaaggatg gtctccaatc agatatgctt ttacatttag       720
     ataccaaaca ggctctctgc ttgattatgc tctgaagaaa gaaaaattat tactacaaat       780
     aaggaagaca atggacacag aaacattaat agatcttatc gtaataggtc tactaaatta       840
     tgtgtcgggc aagattgaca gagaaagttt aacagaaact gaagagctct ataatgagat       900
     aagtaaactg gaacatcttg ttggaaggag taacatcgaa aaaaaaggaa agatttactc       960
     tgagaataaa taaaaaaaat ttgaagaaag aaaaccatgc aaaatttgcg aaaatacaaa      1020
     taaaggtaaa cgttaccatc ctgaagaaag ttgctggttc agagaaaaag gtgaaaagaa      1080
     caagaaaaca gaacaactga agactgtgaa taattcagag atagaaattg aactaaatca      1140
     agtaaatcca aaaaactaga agtatcgcca ttaatagaaa tcaaattact attgaatgac      1200
     actttggaag ttgccggaat ttatgactca ggctcaaatg tgtcattaat taatgcaaaa      1260
     ttattgaaga taaaacgaaa cgatgggaac gacgcgcaaa tggtaaactt gagaactatt      1320
     aatggtgttt agaagacaaa aggaatggtt actttgaaaa ctaaaatttt caacattgag      1380
     aagaacatga gtatctttgt tgtggacgat gaaaacttca attatgattt tctcattggt      1440
     ttagactgca taaaaaattt taaattaagc aaaaatgaaa atctagaaat aatacagagt      1500
     aaagatccag acttaagtga aaatatctcg aatagagaga ataaaaaggt caatattcct      1560
     gaattgtcag gagacttaaa taaagaaaca aatacccaga aaaaaaaata aaatactatg      1620
     gagattcccc aaacattgta gattcggata aagcaaatgt caagattcct gatgtattag      1680
     gtgacaaaca agaagaagaa aagtatttat attctaaaat attaaaacaa ggaaaatgtg      1740
     aagtaaactt aaatgagcat ataaatacta atgaattcga aatctccata aatcatttag      1800
     atttatacca acaatctgaa attgataaag tgataggtaa atataaatcc atatttgcta      1860
     aagataaata cgatattggc actataagag attacgaggc gcatattgac ctaatggtag      1920
     ataaatactg cggtaaacgt ccttacaggt gcacgatcga agataggaag gaaatagaaa      1980
     gtcaaatagg aaaactgtta aaaaagggtc tgattgaaca atcatatagc ccatttgccg      2040
     ccccagtcac cttagcatac aaaaaagaag aggatagaaa atcaagatta tgcattgatt      2100
     ttagggaact gaacaaaatt gtagtccccc aagcacaacc ttttccactg attgaagatc      2160
     taatggtgaa aacagtaaac tgcaaatatt ttacaacatt agacattaat tcagcatttt      2220
     ggtcaatccc cctgaggatt caagatagac acaaaactgc gttcgtaaca caggaaggtc      2280
     attttcagtg gacttgcctt ccatttggac tgaaaacatc gccagcaatt ttccagagaa      2340
     tattaagcaa cataataaga aaacacaaac ttgcagattt tgcagtgaat tttatagatg      2400
     atatcatgat attttcaaaa acttttgcag aacatataac acacctatca aaactgctgg      2460
     gggcaatccg gaagaaaggt tttagactga aattttcaaa atgcacattt gcaaataacc      2520
     aagcaaaata tttaggtcac ataatagaga ataattcagt aaaaccatta aaagattact      2580
     taattgcagt gaaaaatttc ccagtgccgg taacaagaaa gaatgttcgt caatttttag      2640
     ggaaaataaa tttccaccac aaatttatac cacatatggc aatcacactt gaaccattac      2700
     ataacctgtt gaggaaagat gtgaaattca attggtcaaa agaatgccaa gaatctttcg      2760
     atgagataaa atcacggctg tgttctgaac cagttttaaa aatatttgac ccggatgttc      2820
     caattgatat ttatacagac gcatgcctca taggagtggg ggcggtgcta aaacaaaagg      2880
     ataagaatgg agttagtaaa ccagtggctt acttttcaaa aaaactaacc gaagcccaaa      2940
     agagaaaaaa agcgatatac ctggaatgtt tagctattaa agaagccgtg aaatactggc      3000
     aacattggct catgggaaaa gaattcatag tatactctga tcataaaccc ttggaaaaca      3060
     tgaacttaaa agcgaaaatg gatgaagaac tcggcgattt gacatactat ttatcccaat      3120
     ataattttac agttaaatac aacccaggaa aatcaaacca ggaagcagac tgtctgagta      3180
     gaaatccggt tttacaaccg tatgagaata cagatgaatt tttgaaaata gtaaacctaa      3240
     tcaatctcga agacatacaa aaggatcaaa acacaaatct agatcaaaga aagaaaaaaa      3300
     acaaattaat attgaaaaat ggagtttact acacaaaaac taaaagaaaa gaaaaaatca      3360
     tgttatcaga agagctaagt aaaaaactga tagaagatgt acataaaacc tactgccatt      3420
     tgggaagaac tcaaatgaga aataaaataa caccatttta tacagcaata aatcttattg      3480
     acaacataaa aaagatctgt gactcttgtg gaatttgcat aaaaaacaag acaagaagaa      3540
     aatctaaata tgggttcatg tcacacttag gtccagcaag ataccctttt gaaattgtat      3600
     ctattgatac tgtcggaggc tttggtggat ctcgatcaat aaaaaaatat ttacatcttt      3660
     tagtcgacca ttttacgaga tatgcatata ttttaacatc aaaaaatcaa aactccaata      3720
     actttattaa actgatcaaa aatgtgacac aaagttacaa aatcgacatg gtattaacag      3780
     atcaataccc gggaataaat tcaaaagaat ttaaagaatt tctaaaacaa gaaaacatca      3840
     aaatagtgtt caccgctgtt gatgcaccat tttcaaatgg tctaaatgaa aggctaaacc      3900
     aaacactggt taataaaata cgatgcaaaa ttaatgaaaa tgaaaaaaag gttgcgtgga      3960
     caactattgc acaaaaatgt gtagaagctt ataacaaaac agaacacacg atcacaaaat      4020
     tcgccccaaa atacctattg gaaggcgaaa acgtaaatat tctaccacat gaactaaaat      4080
     ctacgtgtac caatgaagat ttgaagaaag acagaaaatt agctaggaaa aatacaatgc      4140
     agtcccacga ctataacaag aaaaaatttg atcggcatag gaaagaacta taactgaagg      4200
     ttggagacca agtgtatgtg gaaaatggaa accgactgaa tagaagaaaa ctagatgaat      4260
     tgagagttgg accatacaag ataacacaga aaatttcaaa ttcaatttat gaagtcgata      4320
     ctggacacaa gaagacagaa tcgaatcatt tccacattac aaaactaatt ccagtgggtg      4380
     atggttctgg aacaatcaca caacacagtg cataattgtt tctccctgga gggggaga        4438
//
ID   Gypsy-4_LH-LTR repbase;    DNA;    INV; 402 BP.
XX
AC   ADOQ01003351;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_LH_;
KW   Gypsy-4_LH-I; Gypsy-4_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-402
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003351; Positions   13476   13075.
XX
SQ   Sequence 402 BP; 148 A; 61 C; 80 G; 113 T; 0 other;
     tgtaaagaaa atcccgatac acttatactt gtgtcaaacc tttctttaaa atttaaatct        60
     gccgcgggac cgacagagct ttacttatcg gcgaagtagc agacactaaa tgggaaagga       120
     actgataggg ggagagagat aaagatttaa gagaaaaaga cacgtgttgt gaaggtgcga       180
     cggattgata agttaaactt ggaaagagga ataacatacc tgaaatagag gctgtaaatg       240
     ttgtttcttc tgttttacag gtatgaattc ataaagaaac gactttgtac ataatgtaaa       300
     taaacctctt ctgttttaca gtgaaacaca tcaccgtctt tattttcgac ataccccaga       360
     attttgacaa gagatataaa gaacatatta gatatatata ca                          402
//
ID   Gypsy-4_LMi-I repbase;    DNA;    INV; 4283 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_LMi-I;
KW   Gypsy-4_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4283
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3365-3365 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3327-3776] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           309..4280
FT                 /product="Gypsy-4_LMi-I_1p"
FT                 /translation="MARLEQHFLAYGISGDAHRRAFFLAYVGPEVYRLLQQ
FT                 LKPEHEPHALPYDELKFCLQEYFDSQVHVTTARHKFFSCHKKQGQSYREWI
FT                 ATLQGLSRDCRFRCANESCQQSYAASLVRDMILVHAPDEGLRKDLLKLRDP
FT                 SLEACLPVIRAFEQSLQASASFHEPFQVHAARPTRRQTPQQPPPHLPSGKQ
FT                 TSFTRGLTQLPSCKDCFVTHPRHQCQFRRTKCNSCGKTGHRAEVCRASSRM
FT                 QVDCTQVDPASDDDPGTAYQEDLHVHAVLPVHDKQVTLSVLVNGHPVDFQV
FT                 DTGSTSSIIVWKTYQRLGSPPLQPFTHNLRSYSNDLVMVKGQFTALIKHGA
FT                 TTCRMRLLVVDTPGATNLLGLDLFDALGLEVHDTTRSIQPGSASSYLQTLR
FT                 TKYHSVFEPSTAGVQGFEAHITLLPTAVPRFFKARPVPFALRDKLQAELQR
FT                 LQGAGVLTPVSNSLWATPIVLVDKPDGSIRVCGDFSKTINAQSIVDTYPIP
FT                 KVDEILTRLNGGKLFAKIDLKDAYLQLPLDEASRNLLVINTPFGLFRYNRL
FT                 PFGIASAPAIFQRFLETLTRDVPCTANYLDDIIVAGQSAQHLADNLDILFS
FT                 VLQTANLHCNLEKCQFFLPQVEYLGHVLSATGIRPLPHHVQAMQDLPSPSD
FT                 VKQLQSVLGYLNYYRKFIPHASTIAAPLYRLLRKNVTWNWDTACESAFRNL
FT                 KQALLQPTCLMAFDPSLPVIVAADASDYGVGAVLSHRVDGLERPVAFISKK
FT                 LTPAQCNYGQIEKEALAIVFALKKFHDYVYGRHFTILTDHKPLLPLFRCDA
FT                 NIPTKTARRLQRWALFLANYSYDIQYRSTTNHANADLLSRLPLGQDPSFDA
FT                 DPEVCCHLDAEEEHTLASLPVDAKLVAKQSAEDPVLREIIRLVQQGWPSDR
FT                 RQVFTPGVQNYWHRRHEFSVRDGVLLIQGENGRPRVVIPPSLQHKVLSLLH
FT                 RGHWGVVLTKRLARQHVYWKGIDADIASMVAACPSCQSKQAAPARRYFPWP
FT                 EASTPWSRLHLDFAGPFLGSSWFIAVDAGSGFPYVSRMSSTSSTHVIQALT
FT                 RIFAIEGLPETIVTDNGPQFTSAEFTAFCASNGIALVHTAPFHPASNGLAE
FT                 RFVRTFKNQMSKLSAHHSLDDALSIFLGSYRTTPQEGTSPAERLHGRPQRS
FT                 LLSLLHPQRPVEHTGRGQRHRFAIHDDVWVLMFSRRGRRWDPAVVTKLLGR
FT                 AMVEVQLSDGSLCRKHLNQVRPRSRQLTTAVDSPPLVAGPSTRQPGGPARP
FT                 TPSTAPPMSMDDGGQPTPAPWPIPMDVDHTPLANHTLPGSSDAMDVDPDSD
FT                 TGLRLAHLFAGE"
XX
SQ   Sequence 4283 BP; 924 A; 1300 C; 1018 G; 1041 T; 0 other;
     gtggcgacga ggattttttt tggactctgg tggtcaagta ggtagtcttc tttgttgtct        60
     tgctcgttgt ttaccatgga cggtcaacca gtcaccgcaa cccctgacgt gtcgcagcaa       120
     attttgctcc tcttacggga catgcagttg gtccagcagg aacttgtgca ggcaatggcg       180
     gccgttagcg cttcagctac ggacggagcc caccgcacgc ctcgttctct tcctgatagt       240
     aaagggttcg ggggggccct ccgcccttcc cagcgtttga taggcaggtg gaatcttggg       300
     caaactacat ggcccgcctt gaacaacatt tcttggcgta cggtatctct ggtgatgccc       360
     accgtagggc tttcttcctc gcctacgttg gtcctgaggt ttaccgtctt cttcagcaat       420
     taaaaccgga gcacgaacca catgccctac cctatgacga attgaagttt tgcttgcagg       480
     agtactttga ctcacaagtg catgttacga cagctcgaca caaattcttt agctgtcaca       540
     agaagcaagg tcagtcgtat cgggaatgga tcgctaccct ccagggctta tcaagggact       600
     gccgatttcg atgtgccaat gaaagctgcc aacaatcgta tgcggcatcg ctcgtgaggg       660
     atatgatctt ggttcatgcc cccgacgagg gcctccggaa ggacttacta aagcttcggg       720
     acccctcctt agaagcatgt cttccagtta ttcgggcgtt tgaacagtcc ctccaagcgt       780
     ccgcctcctt ccatgagcca tttcaggtgc atgcggcccg ccccacccgc cgacagacac       840
     ctcagcaacc acctccccat cttccttctg gtaaacaaac ctccttcact cgcggcctta       900
     cgcagttacc ctcttgcaaa gactgttttg tcacacaccc taggcatcag tgtcagtttc       960
     gccgtaccaa atgtaactcg tgtggcaaaa cggggcacag ggccgaagtc tgtcgtgctt      1020
     cctccaggat gcaagttgac tgtactcagg tcgatcctgc ttcagacgac gacccaggca      1080
     cggcttatca ggaggatctc catgttcatg cagtgcttcc tgttcacgat aaacaggtaa      1140
     ccctgtcggt gttggtcaat ggccacccag tcgacttcca ggtagacact gggtctacct      1200
     cttctatcat tgtgtggaaa acttaccaac gcttgggctc tccccctctt caaccattca      1260
     cccacaacct tcgaagttac agcaatgact tagtgatggt taaaggccag tttacggcac      1320
     tcatcaaaca tggcgccaca acttgcagga tgcgtctcct tgtcgtggat acaccgggag      1380
     cgacgaactt gctgggactt gaccttttcg atgccttggg gctggaagtc cacgatacca      1440
     ctaggagcat ccagccagga tctgccagtt cctatctcca gactcttcgc acaaagtatc      1500
     attccgtgtt cgagccttct actgctggtg tccaagggtt tgaggcacac atcacgctcc      1560
     ttccgacggc cgtaccccgg ttcttcaaag cccggcctgt accattcgct cttcgcgaca      1620
     aattgcaggc agagctccaa cgtttgcagg gagctggcgt cttaacacct gtctctaaca      1680
     gtttatgggc aacgcccata gtattggtag acaaaccgga tggttccatc cgtgtatgtg      1740
     gtgatttcag taaaaccatc aatgcccagt cgattgttga tacatacccc attcccaagg      1800
     tcgacgagat cctcactcgc ctcaatgggg gcaaactctt cgcgaaaatc gacctcaagg      1860
     acgcatattt acagcttcct ttagacgagg cgtcccgcaa cttgctggtt atcaacactc      1920
     cttttggtct tttccgctat aataggctcc cctttgggat cgcgagtgcc ccagcgattt      1980
     tccagaggtt cctcgaaact cttacaaggg acgtgccttg cactgccaac tacctggatg      2040
     acatcattgt tgccggacag tccgctcaac acctagcgga caacctggac atcctttttt      2100
     ctgttctcca aacagccaac cttcactgca atttggaaaa atgtcaattt tttctccctc      2160
     aagtcgaata cttaggccac gtcctcagtg ccacgggtat tcggccgctg cctcatcatg      2220
     tccaagccat gcaggattta ccgtcccctt cggacgtcaa gcagctgcaa tccgtattgg      2280
     gctacctgaa ttattacagg aaattcattc cacatgcctc aaccatcgca gccccattgt      2340
     accgtctctt acgtaagaat gtgacatgga attgggacac ggcatgtgaa agtgccttcc      2400
     gcaatctcaa gcaggccttg cttcagccca catgtcttat ggcctttgat ccatcactcc      2460
     ctgtgattgt tgcggcagat gcctctgatt atggtgtggg tgcagtcctt tcgcacaggg      2520
     tcgatgggct ggaacgacca gttgccttca tctccaaaaa attgacaccg gcacagtgca      2580
     actacgggca aattgaaaag gaggccttgg ccatagtctt cgctttaaaa aagttccatg      2640
     actatgttta tggtcgtcat tttaccatct tgaccgacca caaacccctg ctgcctctct      2700
     ttcggtgtga tgcaaacatc cctaccaaaa cggctagacg cctccaacgg tgggccttat      2760
     ttctggctaa ttactcttat gatattcagt atcgctcgac gaccaaccat gccaatgccg      2820
     atctcctctc ccggctacca ttaggtcagg atccttcatt tgacgctgac ccagaagtgt      2880
     gctgccactt agacgcagaa gaagaacaca ctctcgcgtc ccttcccgtt gacgcaaaac      2940
     tagtagccaa gcagtctgca gaggacccag tcctgcgcga gatcatccgg ctggttcagc      3000
     aaggttggcc gtcggatcga cggcaggtgt ttaccccagg ggttcaaaat tattggcatc      3060
     gacggcacga attctctgtc cgtgatggtg ttcttctcat ccagggcgaa aacggccgac      3120
     cacgggttgt cattcctccc tccctacaac acaaggtcct cagcctgctt catcgtggtc      3180
     attggggagt cgtgctaaca aaacgcctcg cacgtcaaca tgtctactgg aaggggatcg      3240
     acgcagatat cgcctctatg gtagcagcct gcccctcctg ccaaagcaaa caagctgctc      3300
     ctgcacgtcg gtatttccca tggccagagg catcaacacc ctggtccagg ctccatttgg      3360
     acttcgcagg cccctttctg ggctcctcgt ggtttattgc agtcgacgcc ggctctgggt      3420
     ttccttacgt ctcccggatg tcctccacat catcgaccca cgtcatccag gcgctcactc      3480
     gcatcttcgc cattgaaggc ctaccagaga caattgtgac cgacaatggc cctcaattta      3540
     cgtccgcaga attcacggcc ttctgtgcat ccaatggcat tgccctggta cacacggcgc      3600
     ctttccaccc cgcgtccaat ggactggcag agcggttcgt acggactttc aagaatcaaa      3660
     tgtcgaagct ctccgcacac cactcactgg acgatgcttt gtccatcttt ttgggctctt      3720
     acaggacaac tccacaggag ggaaccagtc cggcggagcg gctccatggg cgcccacagc      3780
     gttcgctcct ctccctcctc catccacaac gacctgtaga gcacactggg cgaggtcagc      3840
     gacaccggtt tgctatccac gatgatgtct gggtcctgat gttctcccgc cgcggccgcc      3900
     gttgggatcc ggcggtggtc acaaaactac tgggacgagc aatggtggag gttcaacttt      3960
     cagatggctc cctttgccgc aagcatctga accaggtgcg ccccaggagc cgtcagttga      4020
     cgactgcagt cgactcaccg cctcttgttg caggcccgtc gaccaggcag ccgggaggcc      4080
     ctgcaagacc aaccccttct acggcccctc caatgtcaat ggacgatggt gggcagccaa      4140
     ctcctgcacc ctggccaata ccgatggacg tcgaccacac acctctggcg aaccacacac      4200
     tgccgggctc atccgatgcc atggacgtcg atccagactc cgacactggc ctccgtctgg      4260
     ctcatctctt tgcgggggag gga                                              4283
//
ID   Gypsy-4_LMi-LTR repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_LMi-I;
KW   Gypsy-4_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-581
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3366-3366 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 581 BP; 130 A; 155 C; 152 G; 144 T; 0 other;
     tgtcatgtac cggtggttcg cctgacgagc ggacaacccg caatgcaggg tacaagcgca        60
     tggatgcata ccagtgaggc gtccacagcg gtggttccag agtcaccaga ggacgcgacg       120
     agcaccgcca gagagtgcac taaaccggaa ctattttctc cgcacagtca tgtgagacca       180
     gctcgaaact gccacgtatc actgcgcgcc gactatttag gggggcgcag tgcaacacga       240
     cggcagttct ccgccgaccg cctacgagaa ccatagctga gggatcggac cctcgggaag       300
     agtccctgcc agcgacgccg cgcctccagg acttcccgca acggaatacg tcgtccggct       360
     ccgtctccct ggccgttctc tcaaggctgt cgttatctcc ctggcttgta cctaattggt       420
     gaagaagaaa acttttagtt gatgtttgtt gtttttgcct tagtttcaga agtttgttag       480
     tttgtttgtt tccagaagtg attagtttgt cttgtcaata aacacaattt ccgtatcaga       540
     cagtgtcttt cagttattat ctcctgaggc gagatatagc a                           581
//
ID   Gypsy-4_MeUr-I repbase;    DNA;    INV; 4664 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4664
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3025-3025 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..931
FT                 /product="Gypsy-4_MeUr-I_1p"
FT                 /translation="MNPQNIVPQANPQAALPPVCTQGLKSETREETALASI
FT                 TVSSRIPDFWADQPRLWFVQFEAAVESQKLSDAAKQNLVVTKLNKTAIQQV
FT                 SDLLLSPPQAQKYNSLKDRLLQVFEESETRQFQKLLGEMELGSQKPSQLLR
FT                 RMRDLARGKIPDPTLQIMWNSHLPTAVQAVLAVTEVKDLENLAIVADKVME
FT                 ASQPVMLAELATNSTSGSTQNLITMLERLSVEVAELRRSRQPQRGRGRSNK
FT                 FNRSRSRTRESSRNRKHPEWLCFYHYRYGVKAAKCVEPCNWKNVKSTNPAE
FT                 N"
FT   CDS           877..4107
FT                 /product="Gypsy-4_MeUr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MRRTVQLEECKIDQSSGKLDAMQPKAEVCVGTSHYRL
FT                 CVTDKNTGFRFLIDTGADVSVLPVSKKCVSENIASDSYKVYAANGTEIKTY
FT                 GTRTLVLDLNLRRAFRWTFIVAAVKQPIIGADFLGHYGLLVDLSARKLRDQ
FT                 ITHLNVLASIVSYSNYESSIKTIDCRNMWHELLXKYPDLTKPVSYKDTPKH
FT                 SVXHVIETTGPPVYAKARPLPPDRYKRVKEEFRVMTELGICRPSKSAWASP
FT                 LHVVPKXNGELRPCGDYRRLNAITKPDRYPIPRLHDFKYLLAGKKTIFTRL
FT                 DLNRAYHFIPVAPEDVEKTAIITPFGLFEFPRMTFGLRNAAQSFQRFMDTV
FT                 VLRGLDFLYIYIDDVIIASENPEQHKEHLNVVFQRFNEYGVTINVSKCAFG
FT                 VSKLEFLGFEVSTDGVRPRDDKVQAVVNFPKPDTVEQLRRFLGMLNFYRSH
FT                 IPKAVEYQFELNKYLHNTKKNDKTIIKWTDKADLAFKKCKESLQSAATLSY
FT                 PVPDTNLALMTDASNTCVGAVLQQNINNVWRPLGYFSKKLSETEIKYSTYD
FT                 RELLAVFMAIKHFKNLVEGRILTIYTDHKPLMYAFSKINNDKESPRRIRQL
FT                 TYISEFTTDIRYVSGKHNVVADALSRIDTIYCPTTIDFAEVAKLQASDEYL
FT                 QHVLHSSDNNCNLHFKEIYLPECGKQIYCEVSASKIRPYLPDNFRFLAFSS
FT                 VHNLSHPGIKTTKRLVKQRYFWPDMDRDIGKWSRACLECQRVKVTRHTMSG
FT                 VGDYGKPDRFQHVHIDIVGPLPTTADGYRYCITMIDRCTGWPEAFPVQNIT
FT                 AETVARVMFEGWISRFGCPTKLTSDQGRQFESDIFQYLMKYLGINKIRTTP
FT                 YHPQSNGMVERWHRALKVALMARLECNNNSWLDELPIVLLGLRSATRSDSG
FT                 VSAAELTYGTTIRLPGDFYDDAKLCGSDSEYLQKLRDSVHNLRPRASSHSN
FT                 TRSLFLPSDLSTCKYVYVRNDVMRKSLQPPYDGPYSVIRRRGKTFVIKIGN
FT                 KESTISVDRLKPAYLLDESLLDNNFSDSSSYKYYNNNHDSFYANNADASSK
FT                 VLNPRTTRSGRVIKTPVRFA"
XX
SQ   Sequence 4664 BP; 1419 A; 921 C; 1049 G; 1269 T; 6 other;
     ttggtgaccc cgttttgaac attacaaggt ggactaaaaa ttttttttga taatgaatcc        60
     gcaaaatatc gttccgcaag ccaatccgca ggctgcgtta ccgccggtgt gtactcaagg       120
     acttaagagt gagactcgtg aggaaacagc gttggcgagc atcaccgtct cctctaggat       180
     tcctgatttt tgggcagacc aaccgcgact ctggtttgtc caattcgagg ctgccgtcga       240
     gagccagaag ctcagcgatg cggccaaaca gaatttggtg gttacgaaat taaataaaac       300
     ggccatacaa caagtaagtg accttctatt gtcaccacca caagcacaaa aatacaatag       360
     ccttaaagat cgcttgctac aagtttttga agagtcggag acaaggcagt tccaaaaact       420
     gttaggagaa atggaattgg ggagtcaaaa accttcccag ttgcttcgcc ggatgaggga       480
     cctggcgcga gggaagattc ctgatcccac tcttcagatt atgtggaaca gccatcttcc       540
     aacagccgtg caagcagttc tagccgtcac ggaggtgaag gatcttgaaa atttggcaat       600
     agtggcagac aaggttatgg aagcatcgca accagttatg ttagcagaac tcgcaaccaa       660
     ctcaacttcc ggctcaaccc agaacctgat tacgatgctg gaacgtttga gcgtcgaagt       720
     tgccgagcta cgtcgttcca gacaaccgca gagaggtagg ggtagaagta ataaatttaa       780
     ccggtcaagg tcaaggacta gagagtccag ccgaaaccgt aaacaccctg aatggttgtg       840
     tttttaccat taccggtacg gagttaaggc tgctaaatgc gtcgaaccgt gcaactggaa       900
     gaatgtaaaa tcgaccaatc cagcggaaaa ctagatgcga tgcaacccaa ggcggaggtt       960
     tgtgtcggta cttcccatta ccgcctatgt gtaaccgaca aaaataccgg gtttagattt      1020
     ctaatagata cgggcgccga cgtgtcggtt cttccagtgt cgaaaaagtg cgtgtcggaa      1080
     aatatcgcga gtgacagtta taaagtttac gcggcaaacg gcacggagat aaaaacctat      1140
     ggtacacgta cgttagtttt agatcttaat ttaaggaggg catttagatg gacgtttata      1200
     gtagccgcgg tcaaacaacc gataattggt gccgattttt taggccatta tgggttgttg      1260
     gttgatttaa gcgcacgtaa gttgagagat caaattaccc atctaaacgt cctcgcttcg      1320
     atagttagtt atagtaatta tgaatcttcg attaagacta tagattgtag aaatatgtgg      1380
     catgaacttt tatstaagta cccagattta acaaaaccag tatcgtacaa agatacgccc      1440
     aaacattccg tgwaccatgt tattgaaacc acgggtccac cggtttacgc aaaggctagg      1500
     cctcttccac cggatcgtta caaaagggta aaagaggaat tccgggtaat gaccgagtta      1560
     ggtatctgcc gmccgtctaa gagtgcgtgg gctagtccct tgcacgtggt gcccaagaam      1620
     aacggtgaac ttcgaccttg cggcgactat agacggttaa acgcgataac caaaccggat      1680
     cgttatccga ttcctcgatt acacgatttt aagtatttat tggcaggtaa aaaaacaata      1740
     tttacccgac tagatttaaa tcgtgcttat cattttattc cagtggcccc ggaggatgta      1800
     gagaaaactg caatcataac gccctttggg ttgttcgagt ttccacgaat gacattcgga      1860
     ttgcgtaacg ccgcccaatc cttccaaagg ttcatggata cagttgtact wcgaggctta      1920
     gattttttat atatatacat cgatgatgtc attattgcaa gtgagaaccc cgagcaacac      1980
     aaagagcatt tgaatgtagt tttccaaagg tttaatgaat atggtgttac tataaatgtc      2040
     tctaaatgtg catttggtgt gtctaaacta gagtttttag gttttgaagt gtcgacggac      2100
     ggtgttcgcc cgcgcgacga taaagtgcaa gctgtggtaa attttccgaa accggacacc      2160
     gtcgagcaat tgcgacgatt cctaggtatg ttaaattttt accgctcaca catacctaaa      2220
     gctgtagaat atcaatttga attgaataaa tacttgcaca atactaaaaa gaatgataag      2280
     actattataa agtggactga taaggctgac ttggcattta agaaatgtaa ggagagctta      2340
     caaagcgccg ctacattatc ttaccctgtg ccagatacta atttagcgct tatgacagat      2400
     gcttcaaaca cttgtgttgg tgcagtctta cagcagaaca tcaataatgt atggcgaccg      2460
     cttggttatt tttccaaaaa actaagtgag acggaaatta aatattctac atacgatagg      2520
     gaattgttag cagtattcat ggctatcaaa catttcaaaa acttagtgga aggtcgaata      2580
     ctaactattt atacagacca caaaccactc atgtacgcgt tttccaaaat taataacgac      2640
     aaagagagcc ctaggagaat tagacaactt acatacatta gcgagtttac cacggatata      2700
     cgatacgtta gcggtaaaca taatgtcgtg gcagacgcgc tctcacggat tgataccata      2760
     tattgtccca cgacaataga tttcgctgaa gtggctaaac tacaggccag tgatgaatac      2820
     ctgcagcacg tattacactc atcggataac aactgtaact tacacttcaa ggaaatatat      2880
     ctaccggagt gtgggaaaca gatatattgt gaggtttctg cgagcaaaat tagaccgtat      2940
     ttaccagaca attttaggtt tttagctttt agctcagtgc ataatttaag tcacccaggg      3000
     attaaaacta ctaaaaggct agtcaaacaa agatattttt ggccagacat ggacagagat      3060
     attggtaagt ggtctagagc atgtttagaa tgccaaaggg taaaggttac tagacatacc      3120
     atgtcaggtg ttggagatta cggaaaacca gatcgttttc aacatgtaca cattgacata      3180
     gtaggcccgt tacccactac cgcagacggc tatagatatt gcataactat gatagatcgt      3240
     tgtacaggtt ggcccgaagc ttttccagtg cagaatatta ccgccgaaac ggtagcgaga      3300
     gttatgttcg aaggttggat atcgcgtttt ggatgcccta cgaagctaac aagcgaccag      3360
     ggtagacaat ttgagagcga tatttttcag taccttatga aatatttagg cattaataaa      3420
     atacgtacga cgccttatca cccgcaaagc aatggcatgg ttgagcgatg gcatagagca      3480
     ttgaaagtgg ctcttatggc tcgtttggaa tgcaacaata attcatggtt agacgagttg      3540
     cctatagtgt tattaggtct gcgttccgct actagaagcg acagcggggt gagcgcagcc      3600
     gagttaacct atgggacaac tattagatta cctggcgatt tttacgatga tgctaaactg      3660
     tgtggttcgg attcggaata tttacaaaaa cttagagata gcgttcataa cctaaggcct      3720
     agagcatcca gccatagtaa cacacgttcg ttattccttc ctagtgatct tagtacttgt      3780
     aaatatgtgt atgttagaaa tgatgtmatg cgtaaatccc ttcaaccccc ttatgatggc      3840
     ccatacagcg tcataaggag gagaggaaag acttttgtaa ttaaaatagg caataaagag      3900
     tcgactatct cagtagatag gcttaaacct gcctatttac ttgatgaatc gttgttagat      3960
     aataatttta gtgatagtag tagttataaa tattataata acaaccacga tagtttttat      4020
     gcgaataacg cagacgcttc cagtaaagtt ttaaatccta gaacaacgcg aagcggccgc      4080
     gttatcaaaa cacccgtacg ttttgcataa aatgcacttt gttgcgaact tacgacatac      4140
     gtattgtgtt attgtaaacc atttcgattg cttaattagt taacgtacct aataaaagta      4200
     cttacgtata acgttatttg atatttttac attgtctcta cactgcgaca gtagtcggaa      4260
     caatgggttc tggacagagt aaggacgaaa taatcgcaca gacaacagtg aataacaacc      4320
     tggtcacgca aaaactggac aatatgggtt ggatcataat cgccctagta gcaattgtcg      4380
     ccctcatcgt tggatacgcg gcgtggtcac gatgcagaag cgccgcgaag agttgggtgc      4440
     gtaagcaggc ggtcgacaaa ccgccgctgg tgaccgtgca aaccgtctcc catcaaccgc      4500
     caacggtacc gcagtacgcg tcatagtgtt atagtgcgtg atacttatat tggtgcttta      4560
     cgaatactta gattatatat attttttatg tgtgttatgt ttgttttgta ttctttttat      4620
     atgttgtcag gatattgtat acttttgtta aaagggggga atac                       4664
//
ID   Gypsy-4_MeUr-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-211
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3057-3057 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 211 BP; 77 A; 44 C; 35 G; 55 T; 0 other;
     tgtagggaca catgtatgct acgaaatgta atgtaaacct gtacacaatg aatgacatag        60
     cggtggctgc gccctccgca taagtatata aagacaatta taaacagtcg caattatacg       120
     gagtaacgga acagtcgcgt attcatttca tccccttctg atagtaaact caagtctcat       180
     attaacaaca attacataat ataaacctac a                                      211
//
ID   Gypsy-4_MoPha-I repbase;    DNA;    INV; 5648 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5648
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1090-1090 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           494..2722
FT                 /product="Gypsy-4_MoPha-I_1p"
FT                 /note="retropepsin."
FT                 /translation="MSDQNTDTALNVVQDALEEIFDNALRLLNSRANSPNI
FT                 TTERAFPIQGPDFSLINDNMDTRSPTRTDVAGPSTRSLPHASPRVIREEPE
FT                 EEAQELRNNLSEQSGSSPTAPQIHRRPMHPMENMMLHDLLFEIRELRFQLG
FT                 NRHEAQPPPRETARNTRQPTNHALDLSYGHSPRDVRHRHGTNTYNLSLKEA
FT                 RNMIPEINGTSRERVREFLNASSYAMKNIHPSDEFILLDAILCTKFKGKAM
FT                 MDFHTRDIENYDQLKRELENEYLGKRSTAHLQLEFNSLKQKSNETAQEFGR
FT                 RVDNLAMELYESMEEGKNHTIEQQRAILESIKEQALYNYQIGLHEEIKLLV
FT                 RAQRYNTLQEAIAGASAEEKVKGASTRLNGNRRDMPNAQRNNRAPTIRCGK
FT                 CGKIGHDGRDCRSSRYANRFELPRPEGRPRVNTAVQQCSYCKKTGHSRNDC
FT                 WTLHGRPPPKDEDRPEAKPKRKIEKDAKQRTSKAVKMIKHADTASSDESSD
FT                 DDSSTTGTAAAYQVTHVKRDAHKDSGLDLVTLSIRETKSGKIDMLFDSGAT
FT                 LSLIKVKNLKGETKIRHERIALVGITGHKVYTIGKIQATIELGKHKIKHPI
FT                 YVVKDDFPLEYDGILGLDFLRKQQVTCDYNQKKLTIRDVTLKFKSYQQTVL
FT                 KPRSETIVRAVTNRNKTGVVRAQEPAPGVYIGRCLVKPKNFSCPISVINTT
FT                 DKTIRINTPVVTVEDLSEKNPHEVYTVVAEPKNKSHLPRKERI"
FT   CDS           2726..5320
FT                 /product="Gypsy-4_MoPha-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="QMLRTQHLNSEERQALLRLCEDYQDVFHLSGEPLSCT
FT                 AAVQHEIHTRADTAPVNVRPYRLPTKHKEEVNNQMKQMLTDGIIRASTSQW
FT                 NAPLLVVPKKADSSGKPRLRIVIDFRKLNDLTIGDSFPLPNIEEILDQLGN
FT                 AKYFTTLDLASGYHQIPMAERDRQKTAFSTPYGHYEFNRMPFGLKNAPATF
FT                 QRLMNSVLTGMQGLKCLVYLDDIVIYGSSLEDHNKRLKEVLQRLRKANLKL
FT                 QPDKCEFLRKEVNYLGHIISEEGISPDPAKLQAIKDFPAPQKVKDVQSFIG
FT                 LAGYYRKFINEFSRIAKPLTKLTKKSEKFVWSTEQQIAFDILKEKLMTAPV
FT                 LQYPDFSKEFNVTTDASDYAVGAVLSQGPIGKDRPIAYASRVLNRAEQNYS
FT                 TTEKELLAIVWAVKHFRPYIYGTKFKIITDHKPLVWLFSVNDPGSRLIRWR
FT                 LKLEEYDYEIVHKAGRANANADALSRNVKPEVHITETADKMLALKEDGEHN
FT                 QIHMSNEENKNNETVQSYTEEEKRKILYEYHDAPTGGHQGVERTLKRIRLK
FT                 YNWPGITADVEKHIKKCELCQKNKLSKRNKIPLVITDTPSRPFEKCALDIV
FT                 GPLTETANGNKYLLTFQDHLTKFSKAMPIPNQEANTVSKEFVTKIVLEYGT
FT                 PECILTDQGTNFTSEIFKNACKLLKIDKIQTTAYHPESNGTLERSHRTLAE
FT                 YLRHFINKEQTDWDEWIPYAMHTYNTTPHTATGFTPFELVFGRQAELPTAL
FT                 SRPPNPTYNYEDYAQELREKIRATNQIAREKVKKEKQKAKNYYDKTTKEIK
FT                 YKIGDKVLLYDEALRRGRSKKLDAKWTGPYVITEKHSDANYTIKKGRTSTR
FT                 VHTNRLKPFIEA"
XX
SQ   Sequence 5648 BP; 2025 A; 1316 C; 1249 G; 1058 T; 0 other;
     gtggtggcag cggtgggatt tgcactgcca aaaggaggac cacaacagtg gtggcagcgg        60
     tgaggatttg cactgccaaa aggaagatcc aagaggaacc aagcgtcacc gagcaatcag       120
     ctgtacaggc caggaagcca gccacgccgg agcgtacata gcgcgtcagc gataagagag       180
     aaactcgaga cgacgccgag acctaccgcg acaaggctca gctgatcgcc gcaccatgca       240
     gctcatcgta cttatgtaag tccgacaaac attaaattgt aacgcgaaac gagcgtagga       300
     cgacataaaa ctgtaacacg aatagagcaa aatatcggtt gacccccggt aaccgcgatt       360
     accgtaaaaa gacatagcta agatagctac tgtacttcaa aggcatacga atgcaaacgc       420
     actagcgcaa cgcgacatac gataccgcga aataaaacgc gaactcagca cacgcgctta       480
     cactcgaacg taaatgtccg accaaaacac tgatacagcg cttaacgttg ttcaagacgc       540
     gttagaagaa atattcgata acgcgcttcg acttttgaat agtcgagcaa attcgccaaa       600
     tatcacgact gaacgcgcgt tcccgataca gggaccagac tttagtctaa taaacgacaa       660
     tatggacaca cgttcaccaa cgcggacaga cgtagcggga ccgtcgacac gctccctacc       720
     acatgcgtcg cctcgcgtaa tccgggaaga acccgaagag gaagcacaag agctccgtaa       780
     taatttaagt gaacaaagcg gaagttcacc gacggcgcca caaattcata ggcgaccgat       840
     gcatcccatg gagaatatga tgctccatga cctgctattc gaaattcgcg agcttcgttt       900
     ccagcttgga aaccgacacg aagcacagcc gccgccgcga gaaacggcta gaaatacgcg       960
     acaaccgact aaccatgcgt tagatctgtc gtatgggcac tcaccccgag atgtacgaca      1020
     tcggcatggg accaacactt acaatttaag cttgaaagaa gcgcgaaata tgatccccga      1080
     aattaatgga acttcgaggg aacgagtacg agaattttta aacgccagct cctatgcgat      1140
     gaaaaacata catccgtcgg acgaattcat actcctcgac gcgatactat gtaccaaatt      1200
     caagggcaag gcgatgatgg atttccacac tcgcgatata gaaaactacg accagttaaa      1260
     aagggaatta gaaaatgaat atctgggcaa gcgcagcacc gcccatttgc agctcgaatt      1320
     taactccctg aaacaaaagt caaacgaaac cgctcaagaa tttggacgaa gagtagacaa      1380
     cttggccatg gagttatacg aatccatgga ggaaggaaaa aaccatacaa tagaacagca      1440
     gcgggcgata cttgagagca tcaaggaaca agccctttac aactaccaga tagggctaca      1500
     cgaagaaata aagctattag ttcgagccca acggtacaac acgcttcaag aagcaatcgc      1560
     aggagctagt gcggaagaaa aagttaaggg ggcaagcacg cgcctcaacg gcaataggcg      1620
     ggatatgcca aatgcccaac gcaataaccg tgctccgacc atccgttgcg gaaagtgcgg      1680
     aaaaatcggg cacgatggaa gagactgccg aagcagcaga tacgccaacc ggttcgaatt      1740
     accccgaccg gaaggacggc cacgagtaaa tacagcagta caacaatgca gttactgcaa      1800
     gaaaacgggc cacagccgaa acgactgctg gaccctgcat ggacgacctc caccgaaaga      1860
     cgaggatcgc ccggaagcaa agccaaaaag gaaaatagaa aaggacgcta aacagcgtac      1920
     aagtaaggcc gtcaaaatga taaaacatgc cgatacggca agtagcgacg agagctcgga      1980
     cgatgactcg agcacgacgg gcaccgccgc cgcgtatcaa gttacgcatg taaagcgaga      2040
     cgcacacaaa gatagcggac tcgacttagt cacactttca atacgagaga ccaaatcagg      2100
     aaaaatcgac atgttattcg attccggagc cacactctcg ttaataaaag taaaaaattt      2160
     aaaaggcgaa accaaaattc gccatgaaag aatagccctc gtcgggataa caggccacaa      2220
     ggtctacacc ataggaaaaa tacaggcaac aatagagcta ggcaagcata agataaagca      2280
     tccgatatac gtagtaaagg atgattttcc gctagaatac gatggcatcc taggattaga      2340
     tttcctacga aagcaacaag taacgtgcga ttataaccag aaaaagttaa cgataagaga      2400
     cgttactctg aaattcaagt catatcaaca aaccgtgtta aaacctcgca gcgaaacaat      2460
     tgtaagggcc gtgactaatc gaaacaaaac tggagtcgta cgggcccagg aaccagctcc      2520
     aggggtttac attggcagat gccttgtaaa accaaaaaat ttttcatgtc cgatcagtgt      2580
     aatcaatacc actgataaga caatacggat caacacaccg gtcgttaccg tagaggattt      2640
     aagcgagaaa aatcctcacg aggtttacac cgtggtcgct gaaccaaaaa acaaatctca      2700
     cctccctcgg aaggagcgga tttgacaaat gctacgaacg caacacctca actcagagga      2760
     acggcaggcc ctcctgcgct tatgcgaaga ttatcaagac gtcttccatc tgagcggaga      2820
     acccctgtct tgcacggccg ccgtgcaaca cgagatccac acgcgcgctg acacggcacc      2880
     ggtaaacgta cggccgtatc gcctccccac caagcacaag gaggaagtaa ataatcaaat      2940
     gaagcagatg ctcacagatg gaataatcag agcaagtaca agtcagtgga atgcaccctt      3000
     attagtggtt cccaaaaaag ctgactcaag cggaaaaccg cgactacgga tagtcatcga      3060
     cttccgaaaa ttaaacgatc taacgatcgg cgactcgttt ccattgccca atatcgaaga      3120
     aattttggac caactaggaa acgccaagta ttttactacg ctagatttag cgtcagggta      3180
     tcaccaaata cccatggcag aacgcgatag gcaaaagaca gcgttctcca ctccatatgg      3240
     acattacgaa tttaatcgaa tgccatttgg tttaaaaaat gcacctgcaa cattccagag      3300
     gctgatgaac tcagtactca cgggaatgca agggctaaaa tgccttgtgt acttagacga      3360
     tatagttatt tatggctcaa gtctggaaga ccataataaa cgtctaaagg aagtactaca      3420
     gcgcttacga aaagccaatt taaaactgca gccggacaaa tgtgagttcc tgcggaaaga      3480
     agtaaattac ctgggacaca taatctcaga agagggaatc tcccctgatc ccgccaaatt      3540
     acaggcgata aaagatttcc cggcacctca gaaggtgaaa gacgtgcaat ctttcatagg      3600
     cctcgccgga tattaccgaa agttcatcaa cgaattttcg aggatagcta agccgctaac      3660
     taagctgaca aaaaagtcag aaaaattcgt atggtccaca gagcaacaga ttgctttcga      3720
     catactaaaa gagaagctaa tgaccgcacc ggtacttcag tatccggatt tctcaaaaga      3780
     attcaacgta acaacggatg cctccgatta cgcagtggga gccgtactat cgcaaggacc      3840
     gataggcaaa gaccgcccca tagcatatgc gagtcgagtg ctaaaccgtg cagaacaaaa      3900
     ctatagcaca acagaaaaag aattactggc tatagtatgg gccgtcaagc atttcagacc      3960
     gtacatatac ggcaccaagt ttaaaattat cactgaccac aagccccttg tatggctatt      4020
     cagtgtaaac gaccctggat cgagattaat ccggtggcgt ttaaaattgg aagaatacga      4080
     ttacgaaatc gtacataagg ccggacgcgc gaacgcaaac gccgatgcgt tgagccgcaa      4140
     cgtgaaacca gaggttcaca ttacggagac ggctgataaa atgctcgcgt taaaagaaga      4200
     cggagagcac aatcaaatac acatgagcaa cgaagaaaac aaaaataatg agaccgtgca      4260
     aagctacacg gaagaagaaa agcgaaaaat attatacgaa taccatgatg cacccaccgg      4320
     agggcatcaa ggggtcgaaa gaaccctaaa aaggatacga ttaaaatata actggcccgg      4380
     aataacggca gacgtagaaa aacatattaa aaaatgcgaa ctctgccaga aaaacaaact      4440
     atctaaaaga aataagatac cgttagtaat tacggatacc cccagccgac cattcgaaaa      4500
     atgcgctctg gacatcgtgg gaccactgac agagacagca aatggaaata agtacctgct      4560
     aacgttccaa gatcacctga caaaattcag caaggcgatg ccgattccaa atcaagaggc      4620
     aaacacggta agcaaggagt ttgtcacaaa gattgtccta gaatacggta cacctgaatg      4680
     tatcttgaca gatcaaggga caaactttac aagcgaaatc ttcaaaaacg cgtgtaagct      4740
     actgaagata gacaaaatcc aaaccactgc ttaccaccct gagagcaacg gcacccttga      4800
     gagatcgcac cgaacattag cggaatatct gcgacatttt ataaataaag agcagacgga      4860
     ctgggacgaa tggatcccgt atgcaatgca tacgtataat actacccccc acacggcgac      4920
     tggattcact ccgtttgaac tagttttcgg aagacaagcc gaactaccga cagccctgag      4980
     cagacccccg aatcctacgt ataactacga ggattacgca caggaactgc gagaaaaaat      5040
     aagggcaacg aaccagatcg cgagggaaaa agttaaaaaa gaaaaacaaa aggccaagaa      5100
     ttattatgat aaaactacta aagaaataaa atacaagata ggagataaag tactcctgta      5160
     tgatgaagct ctccgccgcg ggagatctaa aaaactagac gcaaaatgga cgggacccta      5220
     cgtaatcact gaaaaacact cagacgcaaa ttatacaata aaaaagggca ggacgtcaac      5280
     acgtgtacac acaaatagac taaaaccgtt catagaagca taatgaaaaa gaaagaaagt      5340
     aaaaccgaaa cgaggagaat acctcaaaag aagacagaaa caaattttat aatagggcac      5400
     ccaaaattaa acattctatt ttgcgcataa ttcgtcattt aagtcaaaag aaaatttttt      5460
     tttacgaaag attgtatata cgacatccga caccttgtaa tgtaattatt gtaattatta      5520
     ttgtaattat atgtagttta taagcgtcga aaaaacgaaa attgtaaaca atctgacgac      5580
     gcgatataac tataagcgaa aaagcgaaaa ttcagaaccc tcattttctt tttatcaggg      5640
     gggaggga                                                               5648
//
ID   Gypsy-4_MoPha-LTR repbase;    DNA;    INV; 555 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-555
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1168-1168 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 555 BP; 164 A; 141 C; 124 G; 126 T; 0 other;
     tgttatgagt gacacactca taacgataag gtgtcagtaa cacgatgacg taagtcggtc        60
     agctgcagtc agcatcgagc gcatcgcgcg aggtttcgcg caatccgctc gacaattagc       120
     gcaatgctcc ttagacagca cttgctgtct aagcaataat ttggaatact gaccgattta       180
     cgccctcacg caatcctccc cttctttcga tccaactacc gaattatcgg atatataaac       240
     cggcgaaaga aggtgaggat cgggtcaatc cgaagtagac aaactaagac tacacacgac       300
     actctgcttt gcggggtcgt gtatcgccga gataacttat actaaatata caaccacgac       360
     actctgcctt gcggggtcgt ggacaacaag ttcctagacg cgacactctg ccttgcgggg       420
     tcgcgatcta actattgtaa ctgaatacaa gaataaaagt gttcaagaca aataacggtg       480
     tatgtgacga aataccttcc tcgcgagatc tctggcagcg atcccaaaat cgtactcaca       540
     acgaggggta caaca                                                        555
//
ID   Gypsy-4_MSe-I repbase;    DNA;    INV; 4300 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4300
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 882-882 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4300 BP; 1271 A; 797 C; 962 G; 1270 T; 0 other;
     ttggcgacga ggattttact caatattctc gtaaaaagtg tatttacgaa aatatggctc        60
     aaacatttgg tattcttacg accttcgacc acaatttgca aacttggcca gaatacaagg       120
     gacggttgct acaatggttc gtcgcaaatg acgtctctga agctaccgat gcttcaggat       180
     ccaaacggcg tgctatttta ttaagcgcac tcaaggaatc cacgtacaag cttgctgcga       240
     atttggcctt accgaaagaa ctcatttcca tcccgttcga tgacatattg ggtcttctgg       300
     acgggcattt tgtgccccaa gtgtgtggtt ttcacgagag gtataaattt tattcagcaa       360
     tccaagtcga gggagaaacc tatcaccaat gggcggcgag attgcgtgga ctatcggcaa       420
     actgtggatt tttaaacgtg gaggaagcat tacgggacca ttttgtaatg gcaatgctac       480
     ctggaacgga gcgtgaaaaa ctatttgctc aagatccaaa gagtttaacg ctaggaaaag       540
     cggtggagtt agcagagagg atgcggtgtg cgcgtgcagg cgccttagca tcaacggtcc       600
     cgggaaaggc accgtctaac aacgatcaaa tactcaagat cgacgccaaa aataattcta       660
     gtgttaaact gttgtgttcg gtttgcggtt ttaaaaatca ttcttcaact caatgtagat       720
     tcgctagcta taaatgtaaa aagtgcaacg ttaaggggca tttgcgtcgc atgtgtaaaa       780
     aaaataattt cttggcacat gagatcacta gcggggatga cggtgagttg tataatattc       840
     gcacctataa tggtgaacca atgacagagg ttgtcactgt tctagggaaa cggatcaggt       900
     ttcaggttga tagcgggtca gctgttactg cgatttccga acgaacgtat tttaaatatt       960
     ttaaggaagt agtgttgtcc aaaacaacta agtatttaat gtcttatact ggtcgacgta      1020
     ttgaatgcgt aggtattgca aaattgccgt tcacatatac tggaaaaaca tgtactttga      1080
     atgtgtttat aattcgtgat ggcggtccgc cacttttagg gagggacttt atatctttct      1140
     tccgattaga attacttccc gtcaattttt gtgagaaaac ctcagattta atagtgcgcc      1200
     taaagaatga atttcctcga gtattcagtg atgagttagg gaaatttagt aaatataaag      1260
     taaaacttaa attgaaaaat gacgtaaagc caattttttt aagccgcgtc ccgtagcctt      1320
     tgcttttacg tgataagctg gacaaagaga tagagcgtct agtgtgcgtt ggcatattga      1380
     agcccgtaga gcattccgag tatgcttcgc ccgtggtgcc cgtgttaaag cgcgacggtt      1440
     ccatccggtt gtgtgctgat tattcaatca caattaataa acaactattg gtcgatcaat      1500
     accctttacc caccgcgcaa gaacttttta caaagttaca ggggggtcaa cagttctcta      1560
     agttggatct ttcacaagcc tacgcacaat gtgtattaga tgaagagtct caaaagtata      1620
     cagttatcaa tactcataaa gggttgttta agtatacgcg cttagtattt gggttgtcca      1680
     gcgccccggc tattttccaa cgcctcatgg aaaatgtttt atcaggtttg gacggtgtat      1740
     tgtgcatgct cgatgatatt ttggtgacgg gagtgaatag ggcgcaacat ctaagtagat      1800
     tgcgcactgt acttggtcga ctacaggacg caggcctaac gctccaaaat gccaaatgtg      1860
     agttttttaa agaggagcta gaatatttag gttatgtagt tgataagcat gggttgaaaa      1920
     agtcacccaa aaaggtttca gcaatattaa acgctccagt tccaaaagac gttgctaaac      1980
     tacaatcgtt tttaggtctt gtaaattact atcgtaattt tgtgcctaat gcttcatcaa      2040
     ttctcagtcc tctatacgca ttgctacaaa aaaattgtaa atggtgttgg actccagagc      2100
     ataatgccgc ttttaagaaa ataaaaacat gttagtatcg gaacaagttt tagctcattt      2160
     tgatacaaac gcaaaagtaa ttttgactgt agatgcttct ccgaccggat taggtgccat      2220
     tctgtcacaa gaagatgcta cagggttgga gcggccagta tcatttgcgt cgcgcacgct      2280
     gaatgttgcg gagcgcagat actcgcaaat acagaaagaa gcgacagcca tcatatttgg      2340
     ggttcgtcgt ttccatcagt atctttacgg cagatctact ccttttgttc ttcgaactga      2400
     tcacaagccc ttaattacta tattcgggcc tcatcgcgga atacccgaga tttctgcaaa      2460
     tagattacag aggtatgcac ttttcttaag tggttataat tttataatag agtatgtcaa      2520
     aagtgctaat aatagcgcag attatttttc tcgcgcaagt ttagatgatt gtgagtcatg      2580
     tgagatggat gatcacgtag cgcacggagt ttcaagatac gttgaggata aggcaactta      2640
     tgttaatttt gttgtagact ctagcttacc tgtaacgctt cagaggttac gcgaagaaac      2700
     tcaaaaagat gtgatattat ctaaagtgat aaaatatatt ttgaatggct ggccgaaaaa      2760
     agttacagac gaaaatatac gtaaattttt tctttgtaga gaccaacttt catttgaaaa      2820
     tggtgtgatc atgcgaggtt ttaaggttgt aattcctaac gtgttacaag caagtttatt      2880
     gtcagagctt cataaatcac acttaggcat tgtaaagtct aaagctgaag ctcgtagtag      2940
     actttggttt ccgggtatcg acaaagcgat agaatctatg attgctggct gtgaaatttg      3000
     tacacagcta agaccgtcac cgacgcgggc accgcttgcc gtgtggccac acccgttaca      3060
     accattttat agagttcatg tagatttctt aggtcctatt aatggtgagt tattttttgt      3120
     cattgtggat gcacattcca aatgggtgga agtgtacaga gtgaattata cttcttcggc      3180
     cacagtgata gcaaaattat acgatttcat gtcacgattc gggttgattc acacgttggt      3240
     tagtgataat gctacatgtt ttgtttctga agaatttacg aaattttgtt tagcgaatgg      3300
     aatatcgcat gtaacgtcgc ccgcctatca tccagctagc aatggccagg cggagagcta      3360
     tgtaaaaatt atcaaaaaaa ggtattaaat cctgtttgtt atctagtagc aatttaaaag      3420
     aacgttacga aaagttatta aaataccttt tcgattacag aaattcggtt cattctacaa      3480
     ctgggtcttc ccctgcgcag ttagtatttg ggcggaaact tcgttcgcgc ctagatttta      3540
     ttaatcctat ttcaccgcca tccccttctg aatctcttac caaatttgtg aaacgacaac      3600
     agtgttcaca gagtagggcc tatggaggtt ccaacagaca aagttttaaa gcgggtgatg      3660
     ttgttatgta caagaaatat caaggaaata aacaatttac ttggaatcgt ggcattgtta      3720
     ccaaacgaat aggcaaatta acatatttag tcacggactg tacgacctta gtgcaagtga      3780
     aaaagcataa aaatcaactc gtaggaaagt ctcttcctcc tatctctaat accagtgacg      3840
     tcctggattt tacgcctgaa ctttacgaga cagatacgtc tccaagggag gaccaagcga      3900
     ttgtgtcgca aagttgcacc agagagggag atggagataa cgaagtggca ctacccgagg      3960
     ctccagctgg agaaaatgaa gtggcactag ccgaggctcc agccgaatta ccgcttcagc      4020
     caaacctgag ctctgatgat gagttttttg aggctgtgac atcacattcg gaaaaccagt      4080
     gcgttcaaga tgggacgtca ggttcagaat gtcaggttgc tcacgaaact gagaatcaac      4140
     tttcctcgga gcaaaggcca ggtcaatcgg agagattatt acgccaaaaa caaagagttg      4200
     attataaagc tttcttttgt atggacttgt aatttgttat tttagtttat gttctgttat      4260
     ttagttgtac cttaataata cttatgttat gggggagaaa                            4300
//
ID   Gypsy-4_MSe-LTR repbase;    DNA;    INV; 100 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-100
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 873-873 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 100 BP; 33 A; 15 C; 18 G; 34 T; 0 other;
     tgttatatat atgactggca ggtttagacc tgtcacaata aagacgtcag tgcgttattg        60
     actgtcaacg agtttgcatt aaataattac atatttaaca                             100
//
ID   Gypsy-4_OrIn-I repbase;    DNA;    INV; 4494 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4494
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1545-1545 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..4051
FT                 /product="Gypsy-4_OrIn-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MCDSDSEDFLNSLESLSVKELKTRLAENNLSTKGKKS
FT                 DLIRRLRKESREPEKTSSSTKISFSFKDVDDSIRDFDGEETYPVEKWVQEV
FT                 EDLQSLLRWDDLHVFLFCKRKLSGRAKLFIQADGGKLKTWESLKNALLREF
FT                 AKTYDSKEIHELLCARRRQRNESVFDYFYVMKELAGRGSIDDGSLMQYVIK
FT                 GIGDSEPNKVILYASRTLEEFRSNLKIYDTMKKNSRSNHEFVRDKAKDQTK
FT                 DEVSRCFNCNGRGHFASKCSKPARPRGSCFECGSMAHQLKSCPQKKKETSV
FT                 HYVDSASHVMTPCGVVFGSTGGVGSGEQVKVLALIDTGSPISLISARFVPG
FT                 FVSLDQPPETCFYGINRSVLPILGMVPCSLFVNNFCISLSFHVVPDSTISR
FT                 ECILGRDFLLQSGLSIEIGGPHNTPFIFKRSNSESSVPDIFNIEVNIGEDD
FT                 PASSLHINNDIAHGRILEARALVKRCYFEPVRPSEPAVNFGISISLTHSQP
FT                 FSHKPRRLSYLEKDAVQKITADLLASGVIRPSSSEYSSPIVLVKKKNGEFR
FT                 MCVDFRTLNKITVKDRFPLPLIDDQLDALQGKKYFTLLDLKNGYYHVRVND
FT                 SSVKFTSFVTPFGQFEYLKMPFGLCNAPSSFQRYLTLIFRELLDTKKVLIY
FT                 FDDILIPSETIEENLDVLKSVFMLMVNNKLELRLDKCRFLQTEIVYLGYQI
FT                 SFKGIKPNPVNVDTINTYPVPTNIFEVQRFIGLTSYFRRFIPNFSVVAAPL
FT                 YNLLKKNATFTFQNLEIASFEALKSSLVSMPLLAIFSPLLDTEVHCDASSQ
FT                 GFGSILFQRQKIDNKMHPVFYFSKRTTATESKYHSFELETLAIKYSLERFR
FT                 VYLHGIKFKIVTDCNALALTFEKKDINPRIARWVLFFQEFDFELEHRAGER
FT                 MRHVDALSRSIMLVEDELEDALVAGQNVDPEIVAIRDSLERQEHPFYELRN
FT                 GLVYRKVARNQLRFFVPVNLRESIVRSYHENLAHLGVDKTCDIVSRLYWFP
FT                 RMRAIAEKVIHNCLKCIFYSPPTGKKEGFLHPIPKGDLPFVTLHIDHYGPL
FT                 ATTARKQKYIFVVVDAFTKFVRLYSCKATTSSEVIGHLLSYFRSYSTPKQL
FT                 IADRGTCFTSGEFRDFVSSNHIKLTLNATATPRANGQVERVNRCLTPMLGK
FT                 LNGDNDWDLILPRVEYALNNSVHASLGDTPSRILFGIHQTGLTFNDSLSPV
FT                 VEILSEGSDVRDFQSIRARAHENIESSQVYNKQYFDSKRKGVHAYSVGDLV
FT                 VITNTDTTVGTSKKLLPKFKGPYQIKKILPNDRYVVTDLDNLQVGRTPYSG
FT                 IVSPGHMKPYASL"
XX
SQ   Sequence 4494 BP; 1219 A; 786 C; 1010 G; 1479 T; 0 other;
     attcagaagt gggatctaac gaaattaact tttatttttg tttcgtctct taaatctaac        60
     ctcgcgtgtt atcaccatgt gcgactcgga ttcggaagat tttttgaatt cgcttgaatc       120
     tttgagtgtg aaggaactaa aaaccaggtt ggctgaaaat aatttaagta ctaaaggaaa       180
     aaaatcggat ttaattcgaa gattacggaa agaaagccga gagccggaaa aaacttcgtc       240
     ttccacgaaa atttcttttt ctttcaaaga cgtggatgat tccattcgtg attttgatgg       300
     cgaagaaact tatccagttg aaaaatgggt ccaggaagtt gaagatctgc agtcactgct       360
     gaggtgggac gaccttcatg tttttctttt ttgcaagcgg aagttatccg gtcgtgcgaa       420
     attgttcatt caagcagatg gtggaaaact caaaacttgg gagtcgttaa aaaatgcctt       480
     gcttcgggag ttcgcgaaga catatgactc caaagagata cacgaactgt tatgcgctag       540
     acgaagacag aggaatgagt ccgtttttga ttatttttat gtcatgaagg aattagccgg       600
     tcgcggttcg attgatgatg gttccttaat gcaatacgta attaagggga ttggagacag       660
     tgagcccaat aaagtgattt tatacgcctc tcgtactttg gaggaatttc gttcaaattt       720
     aaaaatatac gacacaatga agaaaaattc gaggagtaat catgagtttg ttcgggataa       780
     agcgaaagat caaaccaagg atgaagtttc tcgctgtttc aactgtaatg gacgtggaca       840
     ctttgcgtcg aagtgttcga agccagctcg gccgcgggga tcatgcttcg aatgtggctc       900
     catggcacat caacttaaat cgtgcccaca gaagaagaag gaaacctcgg tacattatgt       960
     cgattctgcg tcacacgtca tgactccttg cggcgttgtc ttcgggtcta cgggcggcgt      1020
     cggctccggc gaacaggtga aggtattagc tttaattgat acgggtagcc ctatttcact      1080
     tattagtgcg cgatttgttc cgggatttgt ttctttggat caaccgcctg aaacgtgttt      1140
     ttatgggata aatcgatcag tactgccaat tttggggatg gttccttgtt ctttgttcgt      1200
     taataatttt tgtatttctt tgtcatttca cgttgttcca gacagtacca tttctcgtga      1260
     atgcatatta gggcgtgact tcctactgca atcggggcta tctatagaga ttgggggtcc      1320
     gcataacact ccctttatat ttaagcgatc aaatagtgag agcagtgtcc ctgatatttt      1380
     taatatcgag gtgaatattg gagaagatga tccagcttcg tcgttacaca ttaataacga      1440
     cattgctcac ggtagaattt tggaggctcg ggctttggtt aagcggtgtt attttgaacc      1500
     agtgaggcca tctgagcctg ctgttaattt tggtatatct atatcattga ctcattcaca      1560
     accattttcg cataagccta ggcgtttgtc atacttagaa aaggacgcgg ttcagaaaat      1620
     tacggcggac ctgttagctt ctggggttat tcgtcctagt tcctcggaat acagtagccc      1680
     tattgtacta gtgaaaaaga agaatggtga atttcgtatg tgtgttgatt tccgtacgct      1740
     caataaaatt accgtgaagg atagattccc cttaccacta attgatgatc agttagatgc      1800
     cttgcagggg aaaaagtact ttacgcttct agatctcaaa aatgggtact accatgttcg      1860
     ggtgaatgac tcctcggtca aatttacctc ttttgtcacg ccgtttggac aattcgaata      1920
     cttgaagatg ccgtttgggt tgtgcaatgc accgtccagt tttcaacggt acttgacgtt      1980
     gatatttcgc gaacttttgg atactaagaa ggtactaatt tattttgacg atattttgat      2040
     tccgtctgaa acgatcgagg aaaatttaga tgtgttgaag tcggtcttta tgttaatggt      2100
     aaataataag ttggaattgc gtttggataa gtgccgattt ttgcagacag aaattgtcta      2160
     tttagggtat caaattagtt ttaagggtat taagccgaac cctgtaaatg tggacacgat      2220
     taatacgtat cctgttccaa cgaatatttt tgaagttcaa cgattcattg ggttgacgtc      2280
     gtactttagg cgtttcattc cgaatttttc agttgttgcg gctcctttgt acaacctact      2340
     caagaaaaac gctacattca cgtttcagaa tctggaaata gcatcgtttg aagcacttaa      2400
     atcaagtttg gtttcgatgc ctctgctcgc aattttttct cctttattgg atactgaagt      2460
     tcactgtgat gctagttccc agggtttcgg gtctattttg tttcagcgac aaaaaatcga      2520
     taataagatg catcccgttt tttactttag caagcgcaca actgcaactg aatccaagta      2580
     ccatagtttt gagctcgaaa cccttgccat taagtattct ttggagcgtt ttagggtcta      2640
     tttgcatggt attaaattta aaattgtcac tgactgtaat gcattggcgt tgacatttga      2700
     gaagaaagat atcaatccga gaattgctcg ttgggtgcta tttttccagg agtttgattt      2760
     cgagcttgaa catagggctg gagaaaggat gagacatgtc gatgcactca gccgcagtat      2820
     aatgctagtg gaggatgagt tggaggatgc tttggttgct gggcagaatg tagaccctga      2880
     gattgtagcc attcgtgatt ccctggaaag acaggagcac cctttttatg agctacggaa      2940
     tgggttggtt tacagaaagg ttgctcgcaa ccaattgcgg ttttttgtcc cggttaattt      3000
     gcgtgaatcc attgttcgct cttatcatga aaaccttgct cacctcgggg ttgataaaac      3060
     ttgtgacatc gtttccagac tttattggtt tcctcggatg agggctattg ctgaaaaagt      3120
     tattcataac tgtttaaaat gcatttttta ttcgcctccc acggggaaga aggaaggatt      3180
     tttacaccct ataccaaaag gggatttgcc attcgtgacc ttgcacattg accattacgg      3240
     ccctttagca accactgctc ggaaacaaaa atatattttc gtggttgtcg atgcgtttac      3300
     gaaatttgtg cggctttatt cttgcaaagc tacgacaagt agtgaggtga ttggccattt      3360
     gctaagctat tttcgctcgt atagtactcc caagcagtta atagctgata gagggacttg      3420
     ctttacgtcc ggcgagtttc gggattttgt ttcaagtaat cacattaaat tgacgttaaa      3480
     tgcgacggct actccgaggg ccaacggaca ggtggaacgc gtgaaccgct gtttaacgcc      3540
     tatgttagga aagcttaatg gtgacaacga ttgggacttg attttaccta gggtggagta      3600
     tgctttgaac aactctgtgc atgcctcgct gggggatact ccaagtagaa ttttgtttgg      3660
     gatccaccaa actgggctga cttttaacga ttctttgagt ccggttgtcg aaatcttatc      3720
     tgaaggctcg gatgtacggg attttcaatc tattagagct agagctcatg aaaacataga      3780
     aagcagtcag gtgtataata agcagtattt tgatagcaaa cggaagggtg ttcatgctta      3840
     tagtgttggg gatttggtag tgataactaa tactgatacg actgtcggta ctagcaagaa      3900
     gttactaccg aaatttaagg ggccgtatca gatcaaaaaa atattgccta atgataggta      3960
     tgtggttact gatttagaca atttgcaagt agggcgtaca ccctactctg gaatcgtgtc      4020
     cccaggtcac atgaagcctt atgcatcctt gtgagaaatg gttctgttgt tctcttgttt      4080
     aaacttgtaa atttttgttg tttttctcct caatttcgat caaatgtgat ggtattttta      4140
     ttttattttt taggatacgg acgttgtttt gaccgaacgc taacctctca tgtacaaaaa      4200
     aaaaaaaaaa aaaaaaaaaa aaaaaaaatt gtattgtgtt ctgcttctta tgtttttatt      4260
     tattttattt ttattcgatt tttttttctt ctcttttcag tattaatata taaattaatt      4320
     ataattaaat tttatttaaa ttttttggtt atatggttcg ttcgtgaaca ttcaaattga      4380
     aattgtacct actctaattc aatcagtatt gtaattttgg tatttgtata atttttgttt      4440
     attgttacct atatttttga attgagggca attcctgcgt caggctggcc gaat            4494
//
ID   Gypsy-4_OrIn-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-166
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1574-1574 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 166 BP; 38 A; 22 C; 35 G; 71 T; 0 other;
     tgtaaggttg gtatacctgg tcggagggaa ggctccagtg tggtttatgt ttatgcctca        60
     agagaagttg gtttctcagt ttatgttaac gtcttgtgta tttttatgat taaaactata       120
     ctttatgact tcttttattg tttctattaa tcattcggct attaca                      166
//
ID   Gypsy-4_OsLi-I repbase;    DNA;    INV; 7648 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-7648
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2014-2014 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           421..6396
FT                 /product="Gypsy-4_OsLi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MDNEANVPAEGNRPISIRDAADIVPPFDGHNISVYQF
FT                 TKNCLNARGMISPNAEYGLVQLIKNKLYGQASRVVLSGDYNTIEQLITVLK
FT                 SRFAPLYSSIQLCGDMSKLAQMPNEAVVDYSSRVSSILLQIQNCNEIEVPE
FT                 YTQQYNASAEANAVKAFLTGMKPEIFSRLRNCEFNTLDEAISAAIKGEAEY
FT                 KENMMRMKLTEGYTQAIQCSNCFGYGHSTNTCSSRSFQRQQVSSIQWQPRY
FT                 CQHCQRPGHTIQNCWFNNNNNNNFNNNYNNYNNYNQQRSQWIQPNRVPQNQ
FT                 TPVNQRQNTGQRQGTGQPPAFQHPANQPLANPTFQPPVNQPPSNWYQGTAN
FT                 WRRQPPICTYCQNIGHTIEQCRKKAYQEKIKNQPQQPTTQEPQVRKETNLC
FT                 LKANYAEKPPSIKLISENFHQGVASLMIDTGSDINIIKKHIISNKAIINTN
FT                 IIFELNGITEGYLSTLGYIEVKALDTESVFHVVEDLPIAHDGILGTEFFKN
FT                 SGANIDYAKSMLIVNNFIIPFQEPLITIPSRTRTTIPIKVENTEEKTGFIP
FT                 KIEIHPQLYMGNAVVTNRTGIAFLHATNVSSEDIKIQMPTLQLEPYEEIKI
FT                 EEEEEAPSDSTERITTLFTSLRLEHLNREEKSSIRNLISNNADRFYLNEDE
FT                 LGATNKIFHRIITIDEVPVNIKQYRYPQALKEEVNTQVKELLEKDIIEHSS
FT                 SPYNSPIWIVPKKENTHGNKSWRLVIDFRKLNEKTISDAYPLPNIVDILDQ
FT                 LGSAKYFSIFDLKSSFHQIPMHPDDKHKTAFSTPFGHFHFKRMPFGLKNAA
FT                 GSFQRLMNNVLDGLQGVEAFVYIDDIVIYASSIEEHETKFNRLMARLREAN
FT                 LYLQPEKCELLKKEVAYLGHIITEDGVKPDPKKVEAVKEFPVPKTVKNIRQ
FT                 FLGLCGYYRRFIKNFSKIAKPLSDLTKKEQKFEWTQQQQQAFIILRDKLCE
FT                 EPILQYPDFTKPFNITTDASGIAVGAVLSQGEIGKDQPVSYTSRVLNKAET
FT                 QYSATERELLAVVYAVTHFRPYIYGRKFYLITDHKPLTWLHNLTDPASRLM
FT                 RWKLKLSEYDYEIKYKPGKQNINADALSRNPIATLPIQAKRKHSTTDSKEV
FT                 KKKKQWHQYATRPRATTSTTESREIKKKKQWHQYPTRPRSTTSTTGSKKIT
FT                 KKKKEWHQYPTRPRPSTTTDSREHKKKKETHQYPTRPRPSTTSDSREYKRK
FT                 KETHQHPTRRRPTTSSSSREIKKKKETHQYPTRRRDTSSELNRKTKRKKQS
FT                 HQHTTRQRDTSSESERSIVRRKTTHPTRQXDTSSDSEKEIKKEKITQHYKR
FT                 PHETSSSLHQTNKKRFKENTTSSESEYCDTDEFQDQQLRKRKKETSSSANK
FT                 QFKKRRQNEKQVTVEIHQPPKKLIYEPPKPIKRKHEPIIIGDEIEVFEEGM
FT                 TLPKHIYRDPPKIGSSSGTKKASSETERTSSEIKKASSGTRKTSLETKEEF
FT                 SELKKEEKNDSESTSTAPITPIKIIKEEDQLTTHKITQPRVISNLPVTSKI
FT                 IETTDHLWMKKGIVIVFLNEEGKPIDNQSKEFLQKEKIKIHIPHQEETIIH
FT                 LKKKNKEIFGLVTHSREVLPKTLKTLYQEFYKRKIQECSIPELKGLHKLLQ
FT                 VIFADSNISITLCKGTIVTPPKEERIHIIRENHESPVGGHKGIKKTYHRIR
FT                 NNYYWKNMKKEITDYIRTCISCQKVKLVRMKNKEPMVITDTPIDAFDKVSL
FT                 DILGPLPITTTGNSYILTIQDNLTKYSAAIPLISTTSEEVAKAFTEHFICK
FT                 FGSPKAILTDQGTCFTGSLMKKLAKAFQIKTYRTSSFHPQSNGSLERSHHV
FT                 LIEYLKHYISKEKHWDEWLPQAMFSYNTSIHEGTKFTPHELVFGKKARQPS
FT                 SIKPIDNLKTYPDYIEKLIQTLHNLREIAKSNLEKEKHRQKHYYDRKIRPI
FT                 NYETGEKVMLLNPPRRNKFEKEYTGPYTILRNIEPNNIELAIGPNKKRIVH
FT                 KDRLKRAYLPINIIDQT"
XX
SQ   Sequence 7648 BP; 3229 A; 1549 C; 1255 G; 1611 T; 4 other;
     cgtagatgag aaaaaatttg gtgacagcgg tgggataggt caaatcgttg taacagatag        60
     gtcgagtcac tgtaacaggt agaatccgtc gagtcattct tcatgatagt tcgggtcatt       120
     cgagttttct gttcgacaga gtggtaaaag aatacaattc ttagcggacg ttaatacctt       180
     tcttgaaaca aattagaaaa taagtataag cgtaattaat taagtaaata ctaataaata       240
     gataaatwaw taaataaaaa aaaaagggag aaaacaaaaa aaaatattga aataaacaaa       300
     agaagaaaaa atacagataa aaaaaaagga aggaaaaaaa aacatacgta aaaaaataaa       360
     aaaaaaatat aataaaaaac atatatatat attaataaat aattacatta accaataaac       420
     atggataacg aagccaacgt accagccgag ggcaaccgac caataagcat aagggatgca       480
     gcggatatag tgccaccttt cgatggccac aacatttccg tgtaccaatt cacgaagaat       540
     tgccttaatg caaggggcat gatttcacca aacgccgaat acggcctagt ccaattaatt       600
     aaaaataaat tatatggaca agcctcgaga gtagtattga gcggagacta caataccatc       660
     gaacagctga ttacggtgct gaaatcacgt tttgctccat tatactcatc aatacaacta       720
     tgcggagaca tgtcgaaatt ggctcagatg ccgaacgaag cagtcgtcga ctacagtagc       780
     cgagtctcca gtattttgct gcaaattcag aactgcaacg aaatcgaagt tcctgaatat       840
     acgcagcagt ataatgcatc tgcagaagcc aatgctgtca aggcatttct gactgggatg       900
     aaaccagaaa tcttcagtcg attacgaaat tgcgagttca acaccttgga cgaagcaatt       960
     agtgcagcta ttaaaggcga agcagagtac aaagaaaata tgatgaggat gaaattgacc      1020
     gagggatata cccaggccat tcaatgcagc aactgttttg ggtacggcca cagtacgaac      1080
     acctgcagta gccgttcatt ccaaaggcag caggtatcgt cgatccaatg gcagccaaga      1140
     tattgccagc attgccagcg cccgggacac acaattcaaa attgctggtt caacaacaat      1200
     aacaacaaca atttcaataa caactataat aattacaaca attataatca acaaagaagt      1260
     caatggatac aaccaaaccg ggttccacaa aaccaaaccc cggtgaacca gcggcagaac      1320
     acaggtcaac gccaaggaac gggacaacca ccggcttttc aacatccggc aaaccaacct      1380
     ttggcaaatc cgacctttca acccccggta aaccaacctc ctagtaactg gtaccaaggc      1440
     accgcaaact ggagaaggca acctccaata tgcacttatt gccaaaatat tggccatacc      1500
     atcgaacaat gcagaaagaa agcgtatcaa gagaagatta aaaaccagcc acaacaacct      1560
     acaactcaag aaccacaggt acgtaaagaa acgaacctgt gtttaaaagc gaattacgca      1620
     gaaaagccac caagcatcaa actcataagt gaaaactttc atcaaggagt agcatcacta      1680
     atgatcgaca ctggatcaga tataaacatt attaaaaaac atattatatc aaataaagca      1740
     ataattaata ccaatatcat ctttgaatta aacggaataa ctgaaggcta tctttcaacc      1800
     ctaggataca tcgaagtaaa agcgctggat acagagtccg tattccatgt tgtggaggat      1860
     cttccgatag cgcacgatgg aatactagga accgaattct ttaaaaatag cggagcgaac      1920
     attgactacg ccaaatctat gctcatagtc aacaatttca taataccatt ccaagagcct      1980
     ttaatcacaa taccatcaag gactagaaca acaattccca ttaaagtaga aaatacagaa      2040
     gaaaagacag gctttatacc aaaaatcgaa atacatccac aattatacat gggaaacgcc      2100
     gtagtgacaa acagaactgg catagccttc cttcatgcaa caaatgtctc ctccgaagac      2160
     atcaaaattc aaatgcctac cttacaattg gaaccatacg aagaaataaa aatagaagaa      2220
     gaagaagaag caccatcaga ttctactgaa cgcatcacta cactatttac atcactacgc      2280
     ctggaacatt taaatagaga agaaaaatca agcataagga atttaatttc aaacaacgct      2340
     gacagattct acttaaacga agacgaactt ggagcaacaa acaaaatttt ccatcgaata      2400
     atcacaattg acgaagttcc agttaacata aaacaatata gatacccaca ggcgttaaag      2460
     gaagaagtaa atacacaagt caaagaatta ttagaaaaag atataatcga acattcatca      2520
     tcaccttata attctccaat ctggatagtt ccaaaaaagg aaaatacaca tggaaacaaa      2580
     tcatggagat tagtaatcga ttttagaaaa ttaaatgaaa aaaccattag cgacgcatat      2640
     ccattgccaa acatagtcga cattctagat caattgggaa gcgcaaaata cttctcaata      2700
     ttcgacttaa agtctagctt ccaccagata cccatgcatc cagacgacaa acacaagaca      2760
     gctttttcaa cgccatttgg acacttccat tttaaaagaa tgccatttgg tttaaagaac      2820
     gctgcaggtt cattccagag acttatgaac aacgttctgg atggactaca aggggtcgaa      2880
     gcattcgtgt atattgatga tatagtaatt tatgctagct caatagaaga acacgagaca      2940
     aaattcaata gacttatggc aagactgaga gaagcaaatc tatatctcca gccggaaaaa      3000
     tgcgagctac tgaagaagga agtagcctac ttgggacaca ttatcacaga ggatggagtg      3060
     aaacctgacc cgaagaaagt agaagcggtc aaagagtttc cagttcccaa aacagtaaag      3120
     aatattaggc aattccttgg tttatgcgga tattatagaa gatttataaa aaatttttca      3180
     aaaatagcta aacctctatc agatttaaca aaaaaagaac aaaaatttga atggacacag      3240
     caacaacaac aagctttcat catcctcaga gataaattat gcgaggaacc aattctccaa      3300
     tatccagatt tcacaaaacc tttcaatatc accacggacg catctggaat cgccgttgga      3360
     gcagtactaa gccagggcga aattggaaaa gatcaaccgg tatcatatac ttcaagagta      3420
     ttaaacaagg cagaaacgca atactcagct acggaaagag aattgttagc agtcgtatac      3480
     gccgtaactc atttcagacc ctatatttac ggaagaaaat tttatctaat aactgaccac      3540
     aaaccattaa catggctgca taatttaaca gaccccgcat caagattaat gcgatggaaa      3600
     ctaaaattaa gcgaatacga ctatgagatc aaatataaac ccggaaaaca aaatataaac      3660
     gccgatgcat tatcccgaaa tcctattgca accttaccaa ttcaagcgaa acgaaaacat      3720
     tctaccacag actcaaaaga agttaaaaag aagaaacaat ggcaccagta tgctaccaga      3780
     cccagagcaa caacttcaac cactgaatca agagaaatca agaagaaaaa acaatggcat      3840
     caatatccaa ctcgtccgag aagcactaca tcaaccacag gatccaaaaa aataacaaaa      3900
     aagaaaaaag aatggcacca atatccaaca cgtcctagac catcgacgac aaccgattct      3960
     agggagcata agaagaaaaa agaaacgcac cagtacccta cacgtcctag accatcgaca      4020
     acatccgatt ctagggaata taaaagaaaa aaggaaaccc accaacaccc tacaagacga      4080
     agaccaacta cgtcatcaag ctccagagaa atcaaaaaga agaaggaaac ccatcagtat      4140
     ccaacaagac gccgagatac atcttcagaa ctaaacagaa aaacaaaaag gaaaaaacag      4200
     tcgcatcaac acaccacacg acaaagagat acttcctctg aatccgaaag aagtattgta      4260
     agaagaaaaa caacacatcc tacacgacag ckagatactt cstctgattc tgagaaagaa      4320
     ataaagaaag aaaaaattac acaacactat aagagaccgc atgaaacaag cagcagtcta      4380
     catcaaacaa ataagaaacg ctttaaagaa aacacaacct ccagtgaatc agaatattgc      4440
     gatactgacg aatttcaaga ccaacaactc aggaagagga aaaaggaaac atcaagctct      4500
     gcaaacaaac aattcaaaaa gagaagacaa aatgaaaaac aagttacagt agaaattcat      4560
     caaccaccaa aaaagctgat ttatgaacct cctaaaccaa tcaaaaggaa acatgaacca      4620
     ataataattg gtgacgaaat tgaagttttt gaagaaggaa tgactttacc caaacacata      4680
     tatagagacc cacccaaaat aggttcatct tcaggaacaa aaaaagcatc ctcagaaaca      4740
     gaaagaacat cttcagaaat aaaaaaggca tcttcaggga caagaaagac atctttagaa      4800
     accaaagaag aattttcaga gctgaaaaaa gaggagaaaa atgattcaga aagtacatcc      4860
     acagcaccaa taactcctat taaaattata aaagaagagg atcaacttac cactcataaa      4920
     ataacacaac caagagtgat cagcaaccta ccagtcacat ccaagataat agagacaact      4980
     gaccacctct ggatgaagaa aggaattgtg attgtattcc taaatgaaga aggaaaacca      5040
     atagacaatc aatcaaaaga atttttacaa aaggaaaaaa taaaaataca tatacctcat      5100
     caagaagaaa ccattataca tctaaaaaag aagaacaaag aaatatttgg cctagtaaca      5160
     cattcaagag aagtcttacc taaaacacta aaaacacttt accaagaatt ctataagagg      5220
     aaaattcaag aatgttctat acctgaacta aaaggattac ataaactcct acaagtaatt      5280
     tttgcagact caaacatctc tatcacactc tgtaaaggaa ccatagtcac accacctaaa      5340
     gaagaaagaa tacatatcat tagagaaaac catgaaagcc cagtaggagg acataaagga      5400
     ataaaaaaga cttaccatag aatcagaaat aactattatt ggaagaacat gaaaaaggaa      5460
     atcactgatt atattagaac ctgcattagc tgtcaaaaag tgaaattagt aagaatgaaa      5520
     aacaaagaac caatggtcat cactgatacc cctattgatg catttgacaa agtatcttta      5580
     gatattttag gaccattgcc aataactaca acaggaaaca gctatatact tactattcag      5640
     gataacttga ccaaatactc agctgcaata cccttaatat caactacatc tgaagaagta      5700
     gcaaaagctt ttacagaaca ttttatatgc aaatttggta gtccaaaagc catacttaca      5760
     gaccagggta catgtttcac aggatcatta atgaagaaat tagctaaagc cttccaaatc      5820
     aaaacataca gaacatcttc attccatcca caatcaaatg gatcactaga aagaagccat      5880
     catgttttaa ttgaatattt aaaacattat atctcaaaag aaaaacattg ggacgaatgg      5940
     ttaccacaag cgatgttttc ctataacacc agcatccacg aaggaacaaa attcacacca      6000
     catgaattag ttttcggaaa aaaagctcgt caaccatcaa gtattaaacc gattgataat      6060
     ttaaaaacat accctgatta tatcgaaaaa ctaattcaaa cactgcacaa tttacgagaa      6120
     atagcaaaat caaatttgga aaaagaaaaa cacagacaaa aacactatta cgacagaaaa      6180
     attcgaccaa taaactacga aacaggtgaa aaagttatgc tattaaaccc gcctagaaga      6240
     aacaaatttg aaaaggaata cactggacca tacactatac ttcgaaacat agaaccaaat      6300
     aacatagaat tggcaatagg acccaataaa aagcgaatcg ttcataaaga taggctaaag      6360
     agggcctatc taccaatcaa catcatagat caaacgtgaa aatcgatgca aaaatccact      6420
     agattcatga acacgcgcat gcgtattaac gaaaatctaa aaaaaccgtt ggaagcaagt      6480
     ggaagcactt cataaagaac actactgtac tgcaaagcta ccggcaagtg aaacagagca      6540
     agaaaaagtg ctcaagacac aaaagaaaaa aaaagggaag aaattgtaaa aaagtgaaga      6600
     attataaaaa aagtaagcac aaataatatt aaaattaaga aataaatatt aaatgtcata      6660
     ataatttata gaaaaagaaa aatgcggcac ctgcaacaac tattgatgct ctctgcataa      6720
     cagaccgcac accagccttt caatacatgt tcaatccaca atcaagaaga ctatgcttcc      6780
     actgcgccag aagcattcgc ccagaagctc gtgaacaatg ggtgcaccta ggaagccacc      6840
     attttatagt gaaagaattc ggcgtcaaac aaacccactg catggcgtgc agatgggaat      6900
     tcgcacgact ttcagcctgc catagcgtgc aacaaatgcc aattagccat cagaaatatg      6960
     gaccaagacg acaaagaagc ttttgaagaa ggaatgctcc tcccctccga ggacccagaa      7020
     attgtttatc taaaagaact gttccagcaa taaatgcaaa ataatcaata taaaataaaa      7080
     atttatatat tttccaaact ataaaagagc ttttacttat tcaataagaa cccttaaccg      7140
     ccattatggt ctttcccaga agaggaaaga cagagaaaga atgataaaga aagaaagaag      7200
     acgtaaagcg ccacctacgc aaacgccata tttattttcg aaaaattcta ataacaaaca      7260
     tggttagacg tgccggcaaa cgccagcaat taaaacgctt aaggaaagcc ttaaagaaac      7320
     tcaaggaggt acaggtatat ttcttttccg taatttaata atttactaat tactccaaat      7380
     atcttcaaag gctccaatac agcatcctaa acaaacagag ggtacaccat ggaggttaat      7440
     accaatcgac attccggaat tgaattggaa aaccttcaag aaattaagca gaacagatcc      7500
     aagaagaaaa cacgcaaaga tcataaaata ttttggaaaa ttggccgcat ccccccgaaa      7560
     cgacgaaaca aaatgccaat gccagacttg ccaagaacta caaacaaaaa agtctcttga      7620
     ggacaagaga ctaacacagg gggaaggc                                         7648
//
ID   Gypsy-4_OsLi-LTR repbase;    DNA;    INV; 1439 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-1439
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2024-2024 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1439 BP; 453 A; 292 C; 256 G; 438 T; 0 other;
     tgtaacatcc cacaggaaga agaataaata aaaaaaacct atcattatta attattaaaa        60
     aatatattta tttttttttt ttagttttta tacaatcaaa attataacac ttcgtttttt       120
     tattattgta ataacacaat tcagatcgac aattatattc atatttaata agaaaagaat       180
     gttgtattta tacttaacaa aatttataca aaaaaaaata catcgataat taccgcgtcg       240
     ataattctac cgcgtcgata aaagatcgac gcgggatata tagatagaga taggagtaac       300
     gcgtagaaag agacaggaat agagcgcaga ataaagaaag atagcactac gcatagacag       360
     agacagcgat acgcgcggag tcacgtacac tccggtcaaa gtccaaacac ttccggtatc       420
     gaaaacgcgt atagaaaaaa ctgctacgta agcaaatctc gggtataaat acgagcgtgc       480
     cgcggggagc atttccactt cgattctgat cgtagtccga cacggatcta tgatacgatt       540
     actacatagg tttccagtag cttagattct tttgtcggcg aggcggcaaa ggttctgtgt       600
     cagacccgga gcgctcgacc accggttcgc agcggttctc atacgtgtca ggttcgctac       660
     caagcttaac gagcgagcga aagccgaagc tccttggatg cggcctatta gcacactggc       720
     tctagagcga cgataccgtc ctgcagtgtt cgcaaccaag cttaacgagc gagcgaaagc       780
     agaagctcct tggatgcggc ctatcagtga cggctaagtt gctcagaaat cgtactgcgg       840
     ccgaacgggt tagctcctac agtgtcggaa cggatccacg ccaactcccc gacaatcgaa       900
     caatttattt gaataaattt tattttttaa actcaagtta tagatttgga attttcataa       960
     tcgtatctag agacgcgttc actaatcaat taaatttttc tttgtatttt attttaggtc      1020
     ttcactattt tgttattttt ctttgtattt tttttatata cagggcgcac tcattgtaac      1080
     taatataatt aattttcctt ttgtatttca agaacagggc gcaacatttg tacactgatt      1140
     acactaattc tttatattat tttcattact tacattttta tataactcaa ataattactt      1200
     accttttctt tttatacaca tattataaac aaacacaaca cacactttct tgaataaaca      1260
     ctcattacga tttttgagaa aggaattaac gttggatttc actcctttac cgcgcaccat      1320
     ccgaacctat gatcccttca ttatatagtt atttacgaga cgccttctta tagggaaccg      1380
     ctctccctac gcagtcggtg cagtagcgta ctcgcgataa taattccggg gacgttaca       1439
//
ID   Gypsy-4_PBa-I repbase;    DNA;    INV; 8233 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PBa_;
KW   Gypsy-4_PBa-LTR; Gypsy-4_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-8233
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 677-677 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4553-5032] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           551..5395
FT                 /product="Gypsy-4_PBa-I_2p"
FT                 /translation="MSAAKDSLANATWPKSRSINNPVKFPHTISALNTARN
FT                 ALKEIRDNVRRVLRYDSDEDVHVITEREFPYDEKDYSLLEPNDTDSHINTH
FT                 VQARKHIHTNLRDGSIFNSFNIYQSLINEMAHSPVEQQNEIDNEILQLRHS
FT                 VERHGPQESRTNRRVTIDAPPDNSLLRELMDEIRDLRVQVNGLSRQTQLPM
FT                 GERTRISQDFLPHPLDLTYGRSYQDIRNQPGNALAFLTLKDARNMIPEIDG
FT                 TSRGRVYEFLNASTYAIKNIHPADEHSLLEAILCTKFKGKAMMDFRTRDII
FT                 NFEQLKRELEKEYLSKRSTAHLQLEFNSLKQKPNENAQEFGRRTDNIAMEL
FT                 YESMEEGKNHTVEQQRAILENIKEQALHNYQNGLHDEIKLIVRSQRYQTIQ
FT                 EAIAGATAEEKTRGPSTRTLTYRNRPVFKAHTPSPRCEKCGKIGHYGRDCR
FT                 TSRFSNRYTLPKPEGQPRINTIEKQCSYCKKIGHLRHECWTLNGKSENSKN
FT                 SGKIFSNSRRENPAKNFKNKKSETGEDKPTVPRPASEYRVAHVKGTSLVNT
FT                 GLNAITLPIAEAKGRKINFLFDTGASATIIKLKHVLDHVLIYEEKTKLTGI
FT                 TGHEIITLGKTHVTVQLSRKKIRHPVYIVRDNAPMEYDAILGADFIWKYIT
FT                 AFNPKTNSVQFQNTKFRLYPYRRVTLGPRSETIVQVTTNQNIIGLTKPEEM
FT                 IPGIFIGCCLVEPRNYTCPISIINITEEEKIVQVPQVILEEINIQEKITQE
FT                 SVNAMQTKNKETKLIAREEQINNSLRTEHLNEEERKSVLKLCHEYNDVFHL
FT                 EGDTLSCTTKIKHEISVRTDSSPVNVRPYRLPEKHKDEVNKQIQEMLKQEI
FT                 IRPSVSQWNAPLLVVPKKTDASGKTKLRIVIDFRKLNDLTIGDSFPLPNIT
FT                 DILDQLGNAKYFTTLDLASGYHQISMTERDKNKTAFSTPHGHYEFNRMPFG
FT                 LKNAPATFQRLMNSILTGLQGIKCLVYLDDIVIYGPSLIEHNKRLKLVLQR
FT                 LRENNLKLQPDKCEFLRKEVIYLGHIITENGISPDPSKLHAVKNFPMPKKV
FT                 KDVQSFIGLAGYYRKFIEDFSRIAKPLTKLTKKGEKFEWTETQQNAFDMLK
FT                 NKLTTAPILKYPDFTREFLLTTDASDYAIGAVLSQGEVGQDQPVAYASRVL
FT                 SRAEQNYNTTEKELLAIVWAVKHFRPYLYGTKFKIITDHKPLIWLFNVTDP
FT                 GSRLIRWRLKLEEFDYEIIHKAGKANANADALSRNVAAITEEQQTDDVASE
FT                 KQYKEEEKKQILYEYHNAPIGGHQGVERTINRIRLHHNWPGLKRDVEQYIS
FT                 KCEHCQKNKLQRRAKAPLMITDTPTKPFEKCALDIVGPLPVTTMGNKYILT
FT                 FQDNLTKFSKGIPVQNQEATTIAKELVTKIILEYGIPDKILTDQGTNFTSE
FT                 LFKNTCKLLKIQKLQTTAYHPETNGALERSHRTLTEYLRHYINNDQTDWDE
FT                 WIPYAMFAYNTTPHTATGFTPFELVYGHQAPLPTALTSSPKSSYTYDDYAQ
FT                 ELRERIRAANQIAKENVKEEKQKAKETYDRKTKIRTFEIGDKVLLHDETVR
FT                 RGRSKKLDALWIGPYTILEKIGDLNYKIKMGRRTINVHANRIKPFVEN"
XX
SQ   Sequence 8233 BP; 3323 A; 1721 C; 1522 G; 1663 T; 4 other;
     ttttggtggc agcggtggga tagtcaaaac catccccaag aacaacaact tgagaggatc        60
     atcgttaatc aagccagcag aatcaaacga gtaagccccg acgcattgca ttacgggcag       120
     aagaagaaaa aatttttttt cttgaagaaa aaacaagata agacctgcag taatagatta       180
     caagcaggca gaagaatcaa attcccgata agcagaaaat acaagacctg tagaaaacag       240
     gcggacggaa aaggccccgt caaaaaataa gccgcccacg aaattgtgtc aagtgtacag       300
     tgcaacatta gtagagtgcc gacctacgac aacgagtgtc cagtggcagc ggagcaacga       360
     ccagagagtc cacgagcacc gagagccagc cagcgctgac cgtgtacaac gataccaggc       420
     agcaaggacg cttcaccgac acgcactact acacgcagcc aactgacacg ccagcacaag       480
     cagcgaccat gcgagcgtat acgatctatc tactattgta agtccgaaaa attatatttt       540
     aaaaaggcga atgtccgcag cgaaggacag cttagcaaat gcgacttggc caaaatcgcg       600
     gtcaataaat aatcccgtaa aatttccgca tactatctcc gcgttaaata ccgcgagaaa       660
     cgcgttaaaa gaaatacgcg ataacgtgcg ccgcgtacta cgatacgata gtgacgaaga       720
     cgtccacgta ataaccgaac gcgaatttcc gtacgacgaa aaagattaca gcttgctcga       780
     accgaacgac accgactctc acattaacac acacgtacaa gcgcgcaaac acatacatac       840
     gaacttacga gacggaagca tatttaattc tttcaacata taccaatcgc taataaacga       900
     aatggctcac tcacctgtcg aacaacagaa tgaaatcgac aacgaaattt tgcaactacg       960
     acattcggtc gagagacatg gaccgcaaga aagtcgaacg aaccgccgcg tcacaatcga      1020
     cgcaccgccc gataacagtc tccttcgaga attaatggat gaaatacgcg atctccgtgt      1080
     gcaagtcaac ggattaagcc ggcaaacaca attgcctatg ggcgaacgaa cgagaatatc      1140
     tcaggatttt ctgccgcacc cgttagatct aacttacgga cgttcgtatc aagatatacg      1200
     aaaccagccg ggaaatgcac tggcattcct cacactgaaa gacgcgcgta acatgatccc      1260
     agagatcgac ggcacgtcac gaggacgcgt gtacgaattt ctaaacgcaa gtacgtacgc      1320
     gataaaaaat atacatcccg cggatgaaca ttctctatta gaagccattc tttgcactaa      1380
     attcaaaggc aaggccatga tggatttccg tacgcgagat ataataaact tcgaacaatt      1440
     aaaacgagaa ctagaaaagg aatatttgag caaacgaagc accgcacatt tacaactcga      1500
     attcaactcg ctcaaacaaa aaccaaacga gaatgcacaa gaattcggca gacgaacaga      1560
     caatatagcc atggaattat acgaatccat ggaagaagga aaaaatcata cggtcgaaca      1620
     gcaacgcgcg atcttagaaa atataaaaga gcaggcgctc cacaattacc agaacggttt      1680
     acacgacgaa attaaattga ttgtacgatc gcagcgatat caaacaatac aggaagcaat      1740
     cgcaggagca accgcggaag aaaaaacgcg aggacctagc acgcgaacgc taacctatcg      1800
     aaaccggcca gtatttaaag cgcatacacc cagtccgcgt tgtgaaaaat gcggaaaaat      1860
     cggtcattac ggacgcgatt gtaggactag ccgtttctca aatagatata ccctgcctaa      1920
     gccagaagga caaccacgaa taaatacaat tgaaaaacag tgtagctatt gcaaaaagat      1980
     aggacattta cggcacgaat gttggacatt aaacggaaaa tcggaaaaca gcaaaaattc      2040
     cggaaaaatt ttttcgaatt cgcgaagaga aaatcccgcg aagaacttta aaaataaaaa      2100
     gagcgaaacc ggcgaagata aaccgaccgt cccgcgcccc gcgtcagagt atcgcgtggc      2160
     acacgtcaag gggacatcgc tcgtcaacac tggattaaat gcgatcacat taccgattgc      2220
     agaagccaaa ggtagaaaaa taaatttctt gtttgatacg ggagcatcag caacaataat      2280
     aaaactaaaa catgttctag accacgtcct aatctatgaa gagaaaacta agctaacagg      2340
     cataacagga catgaaataa taacattggg caaaacacat gttacggtgc aactgtcgcg      2400
     aaaaaagata cgacaccccg tatacatagt gcgagataat gcgccaatgg aatacgatgc      2460
     aatcctagga gcagatttca tttggaaata cataactgcg ttcaatccaa aaacaaattc      2520
     agtacaattt caaaatacga aattcagact gtacccatac aggcgcgtaa ctttagggcc      2580
     gcgcagcgaa acaatcgtgc aagtcacgac taaccaaaac ataattggat tgacgaaacc      2640
     agaggaaatg atacctggaa tttttattgg atgttgccta gtcgaaccac gaaattatac      2700
     atgcccaatc agtataataa atattacgga agaagaaaaa atcgttcagg taccgcaagt      2760
     aatattagaa gaaataaata tacaagaaaa aataacacag gaatctgtga acgcaatgca      2820
     gacaaaaaat aaagagacaa aattaatagc tcgagaagag caaataaaca attccttgcg      2880
     cacagaacat ttaaatgagg aagaacgaaa atctgtatta aaattatgtc acgaatataa      2940
     tgacgtgttc cacctagaag gggatacatt atcgtgcaca acaaagatta agcatgaaat      3000
     atcagtacga acagattcat caccagtaaa cgtacgacct tatcgtttac cggaaaaaca      3060
     caaagacgag gtaaataaac aaattcaaga aatgttgaaa caagaaatta tcagaccgag      3120
     cgtcagccaa tggaacgcac cactattagt cgtgcccaaa aagacagacg cgtcaggaaa      3180
     aacaaaatta cgaattgtaa tagacttcag aaaattaaat gatctcacaa tcggagattc      3240
     attcccgttg cccaacataa cggatatact tgatcagctg ggcaacgcga aatacttcac      3300
     gacactggat ctcgcatcag gttaccacca gatatcaatg acggagcgag ataaaaataa      3360
     aacggcattc tctacaccac acggtcatta tgaatttaat agaatgccat ttggtttaaa      3420
     aaacgcacct gcaaccttcc aacgactaat gaattcaatt ttaacggggt tgcaaggaat      3480
     taaatgtcta gtgtatcttg acgacattgt aatatacggt cctagcctaa tagaacataa      3540
     taaaagatta aaattagttc tccaaagact aagagagaac aatctaaagc tccaaccgga      3600
     caagtgcgaa tttttacgaa aagaagtaat ttatttagga cacataatta cggaaaatgg      3660
     aatttcgcca gatccatcaa aattgcacgc cgtaaaaaat ttccctatgc ccaaaaaggt      3720
     aaaagatgtg caatcattca tcggattagc cggatactat cgaaaattta tcgaagattt      3780
     ctcacgaata gcaaaacctt taacaaaact cacaaaaaaa ggagagaaat ttgagtggac      3840
     cgaaacacag caaaatgcat ttgacatgct aaaaaataaa ttaacgacgg caccgatatt      3900
     aaaatatcca gacttcacga gagaattcct cctaaccacg gatgcatcgg actatgcaat      3960
     aggagccgtc ttatcgcaag gcgaggtagg tcaagaccaa cccgtcgcgt acgccagccg      4020
     tgtactatca cgagcagaac agaattataa tacgactgaa aaggaattac tcgcaatagt      4080
     atgggcagta aaacatttca gaccttattt atacgggaca aaatttaaaa taattaccga      4140
     ccataaaccg ttaatatggt tatttaacgt aacagatccc ggatcacgtt taatcagatg      4200
     gagattaaaa ttggaagaat tcgattacga aataatacat aaagctggga aagcaaacgc      4260
     taatgctgac gcattaagcc gtaacgtagc agcaataaca gaagagcaac aaactgacga      4320
     cgtcgcgtca gaaaagcaat ataaagaaga agaaaagaaa caaatattat atgaatacca      4380
     caacgcacct ataggaggac accagggcgt tgaacgaaca ataaatagaa tacgattaca      4440
     ccacaactgg ccaggattaa aacgagatgt tgagcaatac atctcaaaat gtgaacattg      4500
     ccagaaaaat aaattgcaac gacgcgctaa agcaccgtta atgataacag atacgccaac      4560
     aaaaccattt gagaaatgcg cgttagatat cgtaggacca ttgcctgtaa cgacgatggg      4620
     aaacaaatat atattaacat ttcaagataa tttaacaaaa tttagcaaag gaataccagt      4680
     acaaaatcaa gaggcaacaa caatagcaaa agagttagtg acaaaaatca ttctagaata      4740
     tggaattcca gacaaaatcc tgaccgacca aggaacaaac tttaccagcg aattatttaa      4800
     aaatacgtgc aaattattaa aaatacaaaa attgcaaacg acggcctatc atccagaaac      4860
     aaacggagca ctcgaaagat cacatcggac attaaccgaa tatttacgac attatattaa      4920
     taatgatcag acagattggg acgaatggat accgtatgcg atgttcgcat ataatacgac      4980
     accgcacacc gctacgggat tcacgccgtt cgaactggta tacgggcacc aggcaccact      5040
     acctacggcc ctaactagct caccgaaatc atcgtacaca tacgatgatt atgcgcaaga      5100
     actccgtgaa agaatacgag ccgcgaatca gatagcgaaa gaaaacgtaa aagaggaaaa      5160
     acaaaaagcg aaggaaacct acgacagaaa aacaaaaata cgcacgttcg aaataggaga      5220
     taaagtccta ttacacgacg aaacagttcg gcgagggaga tcgaaaaaac tagacgcgtt      5280
     atggatcgga ccctatacaa ttttagaaaa aataggcgat ttaaactata aaataaaaat      5340
     gggccgccga acgataaatg tgcacgcgaa ccgaattaaa ccgttcgtcg aaaattaaaa      5400
     ggagataaaa gaaaaaagca cataatacaa aataagaata atagaaaaat aaaaataaaa      5460
     acattgggac ttaccgaaga agaatcccag caggtccgga aaataatcca agcaccaata      5520
     tccagagtta caaaaatcac tacaactaac aactacacta gtaaataact acactacaaa      5580
     ctatactaca ctatgaatac gagtcatgca ccacacgatc aggccccagg agagcggccc      5640
     ctcgcctgcg cggggttagc cgcggggtca tcccccatcg acatcgtcca gatcggcggc      5700
     cacctctaac ggatcatccg ggtcctcctc gtcatccacc tccacgtcag cgagaacagc      5760
     gtcaggcatg gacacaagca actcgtaaag ttccacggac cacggcaact caaaaaccct      5820
     accgggagca tcatcggtgg cgaaccagat gcaatcgcca cacacatgga acacaccgtt      5880
     agagtaaaag cgattgacta tggacaacca ctcgcgcacg cgacggaaat gggcctgagc      5940
     ggcagggttg tccataaatt cgtcgacgtc atcatcgtcg atttcgatgt cgaagccttc      6000
     gtcatcggac gatgcttccg ccgcggcctg atcatcaaaa atcggcggat cgcgcccata      6060
     attcccctgg gaacccatka tgtcgacaca agaaaggtac ttcgacaact gacgagatgc      6120
     agccagaaag ctcatcgcaa aaaagaatga aatattagaa gggtcacacg gaatatctaa      6180
     caccgatata ataaatagga caccaagaga aatgataaac gttataaaaa gcaagctcaa      6240
     cagattcaca ggagaatctt tttaactaag ataacgaawt aagaataaag taatattacg      6300
     ccwgggaata tgataaaaaa gaaacgccga attcgagcac cgcaaaattt tcatgagaaa      6360
     taagaatttt tattttaaca ttgcagaata aagatatgga taaccaatgg agaagaagaa      6420
     gaaaaactac catttgaagt agagaacttc aaacaccatc ccggaatata cttcgaggaa      6480
     ataggaaaac taaacataat cgagtcattc tggaaaatag ttataaaaat agatatctca      6540
     ccaatcgaaa aacgaacaga gcaaatagaa gaatacattc taaaaacgca aaacatatgc      6600
     actatgttac acttcacaaa caaggggtca tgtcawaact ataataccat aattgaaaac      6660
     aattaccagc ggttaaaaca tttaacaaaa agaataaact ctctgtataa agcacaagat      6720
     acaaaaacga aacgagggct gatagatgga ataggaacta ttgccaaaac attattcgga      6780
     acaatggaca atgaggatag aaaactaatc aatgaacaat taagtatctt acataacaaa      6840
     caacaaacaa cagagcatat aataaaaaat caaattaaaa ttataaacgc gacgatagcg      6900
     catataagta atcacgagaa aataatccaa aataatgaaa acattttagc taacgcaatc      6960
     aaaaaattag aaatggcact aacaacggaa ataagtagcg aaaacataaa agaacacttt      7020
     ataatcacca acgcaatact tgccgcagtg acacaaaacg cggaggacac actagaatac      7080
     ctaactgcga taaaaaatgg aatactacac ccgcgactaa taccgttaga agaaataatg      7140
     aaaaatctta aagaagcaac cacacaaata ccacaaggat catattttcc atttaaaata      7200
     agggaagagg attggcatac aatagaaaaa gtaacgacaa tgagcgcgca ctgcgacaaa      7260
     acaaacgtct acacaatcct acatttcccg ctaatttcac ttccactata cgaaatatta      7320
     aacataatac cactaccggt accatacaag caaaacatat ccgcattaat tgaaacgaac      7380
     aatccattaa tagctttgga tactaacaga cacacgtacg caaaactgac tcacgaaaag      7440
     ttaagacaat gcaagcaaat aaatacaaac tacttgtgtg aacaaatctt tccaattaga      7500
     aatgtaaaaa ccgacccgct atgcgaaata gatatatatg tagaaaaaac gacaactgtt      7560
     ataacaattg taaaattaaa tacataacaa taaaaaatag catatggata gccttaagta      7620
     attcatattc ttggttatat tccacaccag cgaaacaaac tattacaatt ttatgtaaaa      7680
     ataataaaga aatgcgtaga actattacaa atacaggaaa aataacgtta tcaagtaatt      7740
     gcaaaatagt tacatcagac gcgacaataa aatcaacaag taccaacaag ggaaaagaaa      7800
     taaaaacgta tttaccagaa tataacatta cattactaag cgaaactttc aaggcaaata      7860
     agacagaaaa aattaaatta aaagttatac aagacgcaac agacctgata gaattaacaa      7920
     agaaattaaa taacatgaag aacgaaataa acaataacga gatacccttt ttttcacaaa      7980
     aacactttgt atatcctgta tcaattagca gctcattaat aataatcatt gttatcgcaa      8040
     caataataat tgtattaaga aagaaaaaac aaaatgaaat aatgactcac gcaatgtaga      8100
     tcgcgccgtt agaataagcg aaagtattcg attctaagca aacgattata acaaaaaatg      8160
     tatcggaaga aaaaattatg taaaaaagcg aaaacttcgt acctccgttt tcttttacta      8220
     acgggggggg gga                                                         8233
//
ID   Gypsy-4_PBa-LTR repbase;    DNA;    INV; 696 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PBa_;
KW   Gypsy-4_PBa-I; Gypsy-4_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-696
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 678-678 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 696 BP; 227 A; 159 C; 147 G; 160 T; 3 other;
     tgttgtagcc agatctacaa ccaataataa aagtagtccg catggcaaca aaattaggcc        60
     gcatgaatct cgaaaagtct ttcgaaagac gacacaaatg tgtgaccgcc gaaattgcga       120
     ccagtctttc gaaagaccgc agaaatgcat cacgcgagaa cattgcgaaa aagcctatca       180
     gcaaattcct aaatttgatg atcaaaccga gcgtaatatt gattaatcaa tatcacgcaa       240
     ccgatcgacg caatcgatca gaatgctgat cgggcatcga tcagactata taaccggtta       300
     cacaaggcgg agtcgagaga gtcaagaata acgtgtcgtt cggaatcgtt attataatca       360
     tcgcgcaaga tattacaaga gcgcggcgaa gttcacgcga gccgtactat cagcgtctca       420
     ggtgacatac tcggtcgtcg gccgccagag taacgcgata cgcgccgagc cgcccgccga       480
     cgtttaaccg tgtgtgtgaa agaaataaaa taagcaatac taaatccaag aawttgtgca       540
     tttgttaaat aaaccaakta aaataaagaa agtgtgttag tgawttcaag aagatttcct       600
     tccattcttt tgatcctgct cggagtccca actccttagg cttaacgaac ccgactatct       660
     ctaatattat cgttgtagcc catccggggt acaaca                                 696
//
ID   Gypsy-4_PPo-I repbase;    DNA;    INV; 3403 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3403
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2968-2968 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..3401
FT                 /product="Gypsy-4_PPo-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MSVGQFGVLCCFDHCEQTWKTYKSRITQWFIANDINH
FT                 LTDATGVKRRAILLSAFSEGTFKLASDLALPKELQEVPYADILDLLDAHFT
FT                 PKRVGFGERHNFYAAAQHXSESFTQWAARLRGLSAHCGFSNLEEALRDRFI
FT                 MGMQHGIEKEKIYAKDLSGLTLXKAVELAENIRCARAGAASAAAASCSSAV
FT                 VAAPPDAXXKIGXXGASGKSASXSXXKKVKCXVCGYNHRSVDCRFSNYTCK
FT                 KCNRKGHLQRMCKRVNQVTSAETNESDEDDDDGECFHIRSFRGEPMVECIE
FT                 LNGVKLNFEIDSGSAVTVISVNTYRRHYSKTQLLPTKKRLLGYSGEAIHCL
FT                 GVMNQSRILYGGQTRNLDVYVVRGGGPALLGRDFISKFNLQLAPVNYCDSP
FT                 LSIEKLQARFSKTFSDTLGTFNKYKIKLFLKENSRPVFFKARPIAFALKEK
FT                 VTKEIDRLVDLGVLKPVDHSEYASPIVPVLKRNGSVRICADYAVSINKQLV
FT                 VDQYPLPTVNELFSKLHSGEQFTKLDLSSAYNQLCLDEESQKLTCINTHRG
FT                 LYQYTRLVFGLSSAPAIFQRAMETVLSGLDGVLCLLDDILVTGRNRDEHLA
FT                 RLNSVLQRLEEAGLTLQKDKCEFFKDEISYLGYVINKNGLKKSPEKVKAIV
FT                 DAPVPTNVSQLQSFLGLANYYRNFVPGASSILNPLYDLLKKNNKWEWSQAH
FT                 TDAFVLIKNKLASDLVLAHFNQNAKLILTVDASPTGLGAILSQVGEDGAER
FT                 PVSFASRTLTSAEKRYSQIQKEATAIIFGVRRFHQYLYGRTEPFILRTDHK
FT                 PLLSIFGPHKGIPEVSANRLQRYAMFLSAYNFNIEYVRSADNSADYLSRAS
FT                 LVGVSERGAGATEAGRASCADAAAALCDRAAYVCFVVDGSLPITISELKKE
FT                 TSRDIILRRVVNYVLNGWPSKESDPSIKPYFLCRNQLSLENGCLMRGHKVV
FT                 IPNSLRQKILNELHSSHLGIVKTKAEARSRFWXXGVDXAIERLIGSCEICN
FT                 RLRPSPPRTXMAPWKFPPQPFYRXHIDFLGPXNGHTYLVVVDAYTKWVEVY
FT                 DMNANSNSNAVIERLHDXIARFGLPKTIVSDNGTXFCSQQFLNFCAGNGXT
FT                 HLTTPAYHPAS"
XX
SQ   Sequence 3403 BP; 899 A; 747 C; 881 G; 802 T; 74 other;
     ctggcgacga gaaatctaag tacccgcgtt gtgtttttca caaaatgtct gttggacagt        60
     ttggtgtttt gtgttgtttt gatcattgtg aacagacatg gaaaacgtac aagagtcgca       120
     taacgcaatg gtttattgct aatgacataa accatttaac cgatgcgacg ggagtaaaac       180
     ggcgcgcgat attgctgagt gcattctcag agggtacctt taaattggct tcggacctgg       240
     cgctgccgaa ggaactgcag gaggtgccct acgcggatat cctcgacctw ctggacgccc       300
     acttcacacc gaagcgcgtc ggcttcggcg aamggcacaa cttctacgcg gcagcccaac       360
     acsmctcmga gtcstttacg caatgggcgg cacgactgcg ggggctctcg gcwcactgcg       420
     ggttcagcaa cctsgaggaa gctctccgmg accgttttat catgggcatg cagcacggga       480
     tmgagaagga aaagatctac gccaaggatc tsagcggcct gaccctgkck aaggccgtsg       540
     agttggcgga gaacatcagg tgcgcgcgkg cgggcgccgc cagcgcagcc gcagcgtcgt       600
     gcagcagcgc cgtcgtcgcs gcgcctccgg acgcgstgtw caaaatcggw matkckggwg       660
     ctagtggaaa aagtgcwagt gmgagtsggk cgaaaaaggt gaagtgcama gtgtgcggct       720
     ataaccacag gtcggtggac tgtcggttct cgaactatac stgtaaaaaa tgcaaccgga       780
     agggwcacct tcaamgaatg tgtaaaagag tgaaccaggt gacgtcagck gagacgaacg       840
     agtcagacga ggacgacgac gacggtgagt gctttcatat ccgatcattt agaggggagc       900
     ctatggtgga gtgtatcgag ttgaatgggg ttaaattaaa ctttgaaata gacagcgggt       960
     ccgccgtaac cgttatttcg gtaaatacct atagacgaca ttacagtaaa acacaattat      1020
     taccaacaaa gaaaagatta ctaggttact cgggggaagc gattcattgc cttggtgtta      1080
     tgaaccaatc gcgcatattg tatggagggc aaacccgcaa cttagacgta tacgtggtac      1140
     gcggcggggg cccggcgctc ctcggtaggg actttatttc aaaatttaat ttacagttag      1200
     cccctgttaa ctattgcgac tcgcctctgt caatagaaaa gctccaggct cgattttcga      1260
     aaacgttttc ggatacttta ggtacattta ataaatataa gataaagtta tttttaaaag      1320
     aaaattctag accagttttt ttcaaagccc gtccgatagc attcgctttg aaagaaaagg      1380
     tcacgaaaga aattgacaga ttggtcgatt taggggtgtt gaagccggta gatcattcag      1440
     agtatgcgtc gcctatagtg ccggtactaa aaagaaacgg ctccgtgagg atatgcgccg      1500
     actacgctgt tagtataaat aaacagttag tagtcgacca atacccgttg cctacagtga      1560
     acgaactatt ttccaaatta catagcggcg aacagttcac gaaattagat ttatccagtg      1620
     cgtataatca gctttgcctc gacgaggagt cgcaaaagtt aacatgtatt aatacacacc      1680
     ggggactgta tcaatatacg cggctcgtgt tcggtctgtc ctccgccccg gctatcttcc      1740
     agcgcgccat ggagaccgta ctgtcgggtc tagacggcgt gttgtgtctg ctcgacgata      1800
     tattggtgac aggcagaaat agggacgaac acttggcgcg gttaaattcg gtgttacaaa      1860
     ggctcgagga ggctggacta acgttgcaga aggataaatg cgaatttttc aaagacgaga      1920
     ttagttacct tggctacgtc ataaataaaa acgggttgaa aaaatcgccc gaaaaggtaa      1980
     aggcgatcgt ggatgcacct gtgccgacta atgtcagcca gttgcagtcg tttttaggat      2040
     tggccaatta ctacagaaat ttcgtacccg gcgcgtcgtc tatacttaat cccttatatg      2100
     atttgttaaa gaaaaataac aaatgggaat ggtctcaagc gcacacggat gcattcgttt      2160
     taataaaaaa taagcttgcg tcggatttag tgttggcgca ttttaatcaa aacgctaaac      2220
     tcattttaac ggtggacgca tcccccaccg gtctcggggc gatattatca caggtggggg      2280
     aagacggcgc cgagcggccg gtctcattcg cgtcgcgcac gctcacgtcc gccgagaaac      2340
     gatattcgca gatacaaaaa gaagcgacag cgataatatt cggagtccgc aggttccatc      2400
     aatacttata cggccgtacg gaacctttca tattacgaac ggatcataag ccgttattat      2460
     ccatattcgg tccacacaaa ggtatcccgg aagtatctgc gaataggtta caaagatacg      2520
     caatgttttt aagcgcgtac aactttaaca ttgaatacgt tcgcagtgct gataacagcg      2580
     cagattacct gtcgcgcgca agcttagtgg gagtgagcga gcgcggcgcg ggggccacgg      2640
     aggcggggcg agcgtcgtgc gcagacgccg ccgcagcgct gtgcgacagg gccgcttacg      2700
     tttgttttgt tgtcgacggc tcgctaccga tcacgattag cgaattaaaa aaggaaacat      2760
     cgcgtgacat aattttacgg cgtgttgtaa attatgttct taacggctgg cctagcaagg      2820
     aatcggatcc gagtattaag ccctattttt tgtgtcggaa tcaactgtct ttagagaatg      2880
     ggtgcttaat gagaggtcat aaggtcgtaa ttccgaattc tttacgccaa aaaattttaa      2940
     acgaattgca ttcatctcat ttgggtatmg tkaaaaccaa agctgaggcw agatcmaggt      3000
     tttggttksc gggcgtcgat gasgcgatwg aacggctkat aggstcgtgt gagatatgca      3060
     accggttgag gccatcgccg ccgcggactg waatggcacc mtggaagttc ccwcckcagc      3120
     cgttctacmg aktgcatatc gacttcctgg gtccgmtgaa tggccacacs tatctwgtcg      3180
     tmgtcgatgc gtacacwaaa tgggtmgaag tstacgatat gaacgckaat tcgaattcga      3240
     acgcggtwat mgaacgsttg cacgactwca tcgcwcgwtt cggwctwcca aaaacsatwg      3300
     tcagcgacaa tggwacskct ttctgttcgc aacaattttt aaacttttgc gcgggmaatg      3360
     gkatkacgca cctwacgacg ccggcktacc atccggctag caa                        3403
//
ID   Gypsy-4_PPo-LTR repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PPo-I;
KW   Gypsy-4_PPo_; Gypsy-4_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-132
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2969-2969 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 132 BP; 32 A; 37 C; 30 G; 33 T; 0 other;
     tgttgtgtat gcgcatgtac catgcctgaa aaggaacggt cggctgcgcc cgacggctac        60
     gtctacgtga cgtcaataaa ccagtctgca ctaagcaagc gctgtttcag ttactccttc       120
     acatacctat ca                                                           132
//
ID   Gypsy-4_RP-I repbase;    DNA;    INV; 3891 BP.
XX
AC   ACPB02026971;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_RP_;
KW   Gypsy-4_RP-LTR; Gypsy-4_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3891
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02026971; Positions   15369   11479.
XX
CC   Positions [1482-1937] - Reverse transcriptase
CC   Positions [2958-3476] - Integrase core
CC   'CTCCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           768..3866
FT                 /product="Gypsy-4_RP-I_1p"
FT                 /translation="MGDHQPAVNKWDAVDGKAEAATANKFRRLFVTDIKTG
FT                 TRYLVDTGAAISIIPNCNKARERDSGFSLYAANGTPIPTYGEQRKSLDLGL
FT                 RRLFVWDFIVANVTQHILGADFLAGSNLVVDLAQRCLIDRTTGLATIGSIE
FT                 VVELLELSTVPPHVPFRELLLQFPTLTKVGSHKVRQNNGIFHHIETTGPPV
FT                 CSRARRLPPGKYQAVKEEFQQMMNDGICRPSKSPWASPLHVVEKKDGTLRP
FT                 CGDYRLLNSKTVPDRYNVPNLHDFTIQLYGTKIYSALDINKAYHHIPVAEE
FT                 DIPKTAIITPFGLFEFVKMTFGLRNAAQTFQRYMDHLFRDLPFVFVYVDDI
FT                 LIASKDEREHEAHLKVVFQRLSERGLTLRTDKCVLGQPTVSFLGYTVSPEG
FT                 ICPLQEKVKAIRELPKPATIYDLRRFLGMVNFYRKCLPNAATTQRELNKYL
FT                 HHAKRRDKTPIVWSREAEAAYEKTKEDLANATCIAHPSPDSQLSVACDASN
FT                 IGMGAVLQQQEEGTLQPLGFFSKAFNKAQQNYSTYDRELLAVYEAIRYFRP
FT                 MIEGRHILIYTDHKPLTYAMLQSNKTLCPRRLRHLNYISQFSTDIRYQRGE
FT                 DNTVADALSRIAEVTVLNNFQNLAEAQKRDEEIDTQEKRETLRLQLVPVPG
FT                 AEYSLFCETTKGTPRPYVPGELRKPIYENLHSLSHPGIRASRKLVTARFFW
FT                 PNMEKDVAYWAKHCIPCQRAKVNRHTSTSLGSFMPSKKFEHVHLDLVGPLP
FT                 PSDGKEYLLTMVDRATGWPEAIPLTSITATAVAEAFYRHWIARYGVPVRLT
FT                 TDRGRQFESTLFNQLAQLLGITHLRTTAYHPQSNGMVERWHRSLKSALRTR
FT                 LEEASKWTKTLPTVLLGLRSALRRTTGVSAAEAVLGQPLRLPGEIFMPPRT
FT                 QEPTDASLQLLRQEWARTIGPTQTKCFVSPDLEKCTHVFLREEVHKRSLTP
FT                 PYSGPYLVRKRDDKTATVQLPGREDRVSLDRLKPAYLLEESQQDAPKPPEP
FT                 STANDEGSEHRSTRPSRTIRRPVRFAT"
XX
SQ   Sequence 3891 BP; 1107 A; 1032 C; 1005 G; 747 T; 0 other;
     attggtgacc ccgacgtgat gactgaagcg agggacgcac cgctcgagcc tgcaccggac        60
     acagaggctg taagcctcgt gaagttaccc cagttctggg aggaaaatcc agcattatgg       120
     tttctacaaa tcgaagctct atttggggcc tacaagatca agagcgaggc tggacgattt       180
     caagccctgg ttggtcagct accatatcag gtgcttacac aaatagccgg ctcagtgcag       240
     tcacctggtc cagtgcctta cacgtcaacg aaggaaaaac tgatcgctat ctacagtcaa       300
     agccaggaga gaaggatact aaggcttctg gaacaaacac agcttggcga catgactcct       360
     tcacagctgt tgcgacaaat gcaaaaccaa gcgggtacag cgatgtcgga cggcgtctta       420
     cgtaccgttt ggctgcgagc actaccgcag agagtgagag ggattctagc cgctattgaa       480
     caggacgacc tagacaagtt ggccactgtg gcagacaagg taatggaggt agactccaat       540
     acctctgttc acgctgtgag ggatactgac ggcgacagac ttgctcgact ggagaagcaa       600
     ctgcaagttt tgcacgagca attttcttca ttggccacta ccattcagcg cagcaaccgt       660
     ggaagaagta ggtcccgtaa ccgtgaccaa ggagctccca aggatgggta ttgctactac       720
     caccacaagt tcggggagaa ggccaccaag tgcaagaaac cttgcaaatg ggggaccacc       780
     agccagccgt caacaaatgg gacgcggtag acgggaaggc ggaagccgct accgctaata       840
     aattccgccg tctcttcgtc actgacataa aaacagggac aagatacctg gtggacactg       900
     gcgcggcgat atccatcatc cccaactgta acaaggccag ggaacgagac tcaggattca       960
     gcctgtatgc ggctaacggc actccaatcc caacttatgg agagcaaagg aagagcttgg      1020
     atcttggctt acgccgactg ttcgtgtggg atttcatcgt ggccaacgtc acgcagcaca      1080
     tacttggggc agactttctc gccggaagca atctggtggt tgatttggcc cagcgctgtc      1140
     taatagaccg gaccacagga ctcgcaacta tagggtccat tgaagtcgtg gagctactag      1200
     agctatctac tgtaccaccg cacgtaccat ttagggagtt gctgctacag ttccctactt      1260
     taacgaaggt tggctcacat aaggtacgac aaaacaacgg gatatttcat cacattgaaa      1320
     ctacagggcc tcccgtatgc agcagggcgc gcagattgcc gccaggcaag tatcaagctg      1380
     tcaaggagga gttccagcaa atgatgaacg acggtatctg tcggccatcc aagagcccat      1440
     gggccagccc actgcatgtg gttgagaaga aggatggaac attgcgacct tgcggtgact      1500
     accgcctgct gaatagcaag accgtgccag accgatacaa tgtgcctaac ttgcacgact      1560
     tcacgattca gttatacggc actaagattt actcggctct ggatataaac aaggcgtacc      1620
     atcatatacc agtggcggaa gaagacattc cgaagacggc tataatcaca ccgtttggcc      1680
     tattcgagtt cgtcaagatg acgttcggtc taagaaacgc agcccagacc tttcagcgat      1740
     acatggacca cctttttagg gacctaccat tcgtgttcgt ctacgtagac gatatactca      1800
     ttgcgtccaa ggatgagcga gaacacgaag cccacctaaa agtagtgttc cagcggctga      1860
     gtgagcgagg gctgacgcta aggactgata aatgtgtact gggacaaccg acagtcagct      1920
     tccttgggta caccgtgtca ccagaaggga tctgcccact ccaggagaag gtgaaagcta      1980
     ttcgggaact accaaagcca gccaccatct atgatctaag gagatttctt gggatggtaa      2040
     acttctacag gaagtgcctt cccaacgcag ccaccaccca gagagagctc aacaaatatc      2100
     tccaccacgc taaacgcaga gataagacgc ctatagtgtg gtcgagggaa gcagaagcgg      2160
     cttacgagaa gaccaaggag gaccttgcga atgcaacatg catagcacat ccttcaccgg      2220
     actctcagct atcagtagct tgtgacgcca gcaacatcgg catgggagca gtgctacagc      2280
     aacaggaaga gggcacacta cagccgctag gtttcttctc taaagcgttc aacaaggcgc      2340
     aacaaaacta cagcacctac gaccgagagc ttctggcagt gtatgaggca atacgctact      2400
     tcagacccat gattgagggc aggcatatcc taatatacac cgaccacaag ccactaacct      2460
     acgcaatgct acagagcaat aagaccttgt gtcccaggag attacggcac ttgaactaca      2520
     tctctcaatt ctccacggat atacgctacc agcggggaga ggacaacacc gtggctgatg      2580
     ctttatcgag gattgcggag gtaactgtac tgaacaactt tcagaaccta gctgaagctc      2640
     agaaacggga cgaagaaatc gatacccaag agaaaaggga gactcttcgc ctccagctag      2700
     ttccggtacc tggtgcagag tacagtcttt tctgcgagac cacaaaggga acacccaggc      2760
     catacgtacc aggggaatta aggaagccaa tctacgagaa tctgcacagc cttagccatc      2820
     cagggatcag agcatcaagg aagctggtga ccgctagatt cttctggcca aacatggaaa      2880
     aggacgtagc atattgggca aaacactgca taccctgtca acgggccaag gtcaaccgac      2940
     acacctcgac atcgcttggg tccttcatgc cgtccaagaa atttgaacac gtgcacctgg      3000
     acttagttgg accactccca ccatcagacg ggaaagaata tctcctgaca atggtcgacc      3060
     gagcgaccgg gtggccggaa gcgatacctc tgactagcat caccgctacc gctgtggcag      3120
     aggccttcta tcgccactgg atagctcgat atggagtacc agtccgccta acaactgata      3180
     gaggaaggca attcgagtcg acgctgttca accagctagc gcaacttcta gggatcacgc      3240
     atctcagaac aacggcttac catccacaaa gcaacggaat ggtagaacga tggcaccgtt      3300
     ccctgaagag cgcacttcgg acgaggctag aagaggccag caaatggaca aagaccttgc      3360
     ctacggtcct gctaggacta aggtcggctc taaggagaac caccggggta agcgcagcag      3420
     aggcagtgtt gggacagcca ctacgtttgc ccggagaaat attcatgcct cctcgaactc      3480
     aagaacccac agacgccagt ttgcaactgt tacggcaaga atgggcacga accatcggtc      3540
     caacgcaaac aaaatgtttt gtcagcccgg acctggaaaa gtgcacacac gtattcttac      3600
     gagaagaggt tcacaagcgg tcactgacgc caccttattc aggaccgtac ctagtgcgga      3660
     aacgggatga caaaacggct acagtgcaac tacccggcag ggaagaccga gtttcgttgg      3720
     accgcctcaa gccagcctac ctactggagg agagccaaca ggatgcacca aaacctccgg      3780
     agccttccac cgccaacgat gaaggaagcg agcatcggtc aactagacca tcgaggacca      3840
     tcaggcggcc agtgcgattt gcaacgtagc tcttcaatta gggcggaggc a               3891
//
ID   Gypsy-4_RP-LTR repbase;    DNA;    INV; 998 BP.
XX
AC   ACPB02026971;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_RP_;
KW   Gypsy-4_RP-I; Gypsy-4_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-998
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02026971; Positions   11478   10481.
XX
SQ   Sequence 998 BP; 279 A; 258 C; 252 G; 209 T; 0 other;
     tgttggaacc ccaacttcac tttgctgcat aattgaacag ctacataatt tttgtaaata        60
     gaaaaaaaat aatttttata tgtacatatg attgcttatc aaagaaaaat aaaaaaggaa       120
     aagaggcaaa tagcccattt taaaaagtct ttctcaagac tctggaatgg caatgtggtt       180
     ctttggacgg tacagaaata gcgacgcagt cgcgacgcca gggcgcagca cggtcgactt       240
     cgctataaaa agggcagaat cggccgtgtc tgcatcagtc caagataatt tttcaacggg       300
     aaaacatcca caatagctac cttagctgga agattgctga ctgggcctta ctctcaacct       360
     ggatctctgt accggccaaa ggacctcact gtccggacca gaacaaaaaa tcgatcactt       420
     aacccctgta ttgtgaagaa agaagaaaga aggaagtgca gcacacgaga cgccttggtt       480
     taccagctac gaaggcgagc cgaacgccag cgctgccgca gtgcgagaca agagcgagga       540
     ccaagcccag cacacgagcc gctgcagttc gccagctacg gaggcaagcc aaatcaccag       600
     cgctgccaca gtgtgagata cgagcgagga ccaggccaat tggtaccggg gtttatcggg       660
     gtgctggcca cactgccggg gctcccaaag ccggttgact ggtattagcg aacggccctt       720
     ttcagggcct ctcacatcac ttttgctgtg gcctcgcgct gggagcaagc catgctcgga       780
     gcggcgcagt cacttcaacc aacagtgtga acggcccttt tcagggccac ccaactgtac       840
     ggctaccccg ctggggagcg ccataggcga gtcaagcgcc gacacatttt tttgtgaacg       900
     gtccttttca gggccatcca gtcacttgta cctgcgagcg gtgagaagaa gagcttgtat       960
     actggacttc atccctcggc cgcattagta atacaaca                               998
//
ID   Gypsy-4_SI-I repbase;    DNA;    INV; 4106 BP.
XX
AC   AEAQ01007762;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SI_;
KW   Gypsy-4_SI-LTR; Gypsy-4_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4106
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01007762; Positions    4391     286.
XX
CC   Positions [3072-3542] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..3992
FT                 /product="Gypsy-4_SI-I_1p"
FT                 /translation="MEGIGRLPEPMKFEGNLDENFKKFYQSFELYLVATEK
FT                 DQKADTVKTALLLNTIGSEGIEIYNTFRLTSTQKSDYKVVVNEFKKYCAPR
FT                 KNRTYERFVFNSRNQQVDEPFDKFFGDLKKLIQSCEYADQEDTLLVDRIIL
FT                 GTNDLKVQEKLLNIQNVTLETAVETCRNYEATRRHLQNVRNKEEAAVDVVR
FT                 RQKRHNKQKEERGQASTEENSGKHFKCNKCDKVHGYRECAAYGKTCYKCGK
FT                 MNHFSNVCKTKLKNVKDVTKDEESESEEDDLYVSSIVRVGELSKKTKSIWT
FT                 EIIEVNGKALKFKIDTGSEVNIIPLVIYKSIAADGSQRIRQTRTLLQAYGG
FT                 GKIKPIGKVKLRCKNTDRDEVLEFIVVDLNVKLILGLPSIQKLGYIKHINN
FT                 IQINSEKEKFIQSNIDIFTGLGTFKDTCTITLKKNSEPVARPCRRVPLTIK
FT                 SKLKSKLEQLEKQKIIAKVNGASEWVNSLVIIEKPNKTLRLCLDPQELNKC
FT                 IEREFFEIPSFEEINSKLSGKKYFSVLDFKNGFYQVKLDSESSKFTVFSTP
FT                 FGCYKFLRLPFGIKTAPEIFQKINQKNFGDIDNVIIYFDDLLIAANSKEEH
FT                 DKILHKVIDRAREIGVKFNKEKVQYRKTEVKYMGHIFNREGMRIDKDRIRA
FT                 IDELKTPTCKKELQRLLGLVNYVRKFIPKLGEIASPICDLLRKDVEFQWLE
FT                 AHDKALSTIKSEINKNTVLMNFDPTKQITIQTDASLNGIGCCLMQEGRPVA
FT                 YASRGLNETEKKYAVIEKEMLSIVYATQRFHNYIYGRQIKVITDHKPNVCV
FT                 LNKRICQVHSPRLQRLKLKLLKYDIKLEYLPGKYLYVADCLSRNYGNEVGK
FT                 LDKDMNEIVHSVEKHLRMSENRKEEFRSHTKRDVILSDVCKYCMNGWKCKK
FT                 YEGELKIYYQIRNDLHVYRDMIFYNDRVVVPKRLRERMLQLLHEGHFGINR
FT                 TYDRAREILFWPGMSTDIKNMIQNCKVCERYRYANVKEPLVAHEIPKLPFQ
FT                 KIASDILEFGGKSYLVIVDYLTKWLEIILLRSKQSCDIIETFKKVFATHGI
FT                 PDIVIADNMPYSSYECQRFAKEYDFEFQTSSPGYPKSNGLAERFVQTAKNI
FT                 LRKSEDLNGALMEYRNTPITSLKRSPAELLYQRKLKTKLPVVEKVNTKIRK
FT                 FRDELQNRNKIIKKYYDRHAKPRDDFKKGDTIVYKNKKQWQPAVVVSKHKS
FT                 PRSYLINTGSNILRRNSNHLKKSVIKHETSDTEIHNELPETSINQEINNNN
FT                 NNIQNDSNRDNVASDNEAKDEISKESVRPVRARKVPSKFNNYVLY"
XX
SQ   Sequence 4106 BP; 1707 A; 522 C; 801 G; 1076 T; 0 other;
     tggcgcagtc gtggaagaac attgaaaaca aaataaagta atttgtttaa agaactgcaa        60
     cataaaaaca aataatggaa ggaattggaa ggttaccaga accgatgaaa tttgagggaa       120
     atctcgatga gaatttcaag aaattttatc aaagttttga actgtatctg gtagcaacag       180
     aaaaggatca aaaagcagat acagtaaaaa cagcattatt gctaaacact ataggcagtg       240
     aaggcatcga aatatataac acatttaggt taaccagcac acagaaaagc gattataagg       300
     tagtggtaaa tgaattcaag aaatattgtg ccccaagaaa aaacagaaca tatgaaaggt       360
     ttgtgttcaa cagtcgaaat caacaagtgg atgaaccttt tgacaaattc ttcggtgatc       420
     tcaaaaagtt aatacagtca tgtgagtatg cggaccaaga agacacatta ctagtagata       480
     gaataatact aggcacaaat gatttaaagg ttcaagaaaa actacttaac atacaaaatg       540
     ttacattgga gactgcagta gaaacatgca gaaattatga agcaaccagg agacacctgc       600
     agaatgtaag aaataaagaa gaagctgcag ttgatgttgt tagaagacag aagcgacata       660
     acaaacaaaa agaagaaaga gggcaagcaa gcactgaaga aaatagcgga aaacacttca       720
     aatgcaataa gtgtgataaa gttcatggat acagagaatg cgcagcatat ggaaaaacat       780
     gttacaagtg tggaaagatg aatcatttta gtaatgtatg taaaacaaaa ctgaagaatg       840
     tgaaggacgt cacaaaagat gaagaaagtg agtctgaaga agatgatctg tatgtaagca       900
     gcatagtcag agttggagag ttgtcaaaga agaccaagtc aatttggacg gaaatcatag       960
     aagtcaatgg gaaagcattg aagttcaaaa tagatacggg atctgaagtc aacataatac      1020
     cactcgtgat atacaagtca atagcagcgg atggaagtca acggatacga caaacacgaa      1080
     cattactaca agcatatgga ggaggaaaaa tcaagccaat aggaaaagtt aaacttagat      1140
     gtaaaaatac agatagggac gaagtattag aatttattgt tgttgattta aatgtaaaac      1200
     tgatactcgg gttgcctagt attcaaaagt taggttacat taaacacatt aataacattc      1260
     agataaatag tgaaaaagaa aagttcatac agtcgaatat tgatatattt acaggtttag      1320
     gtacatttaa agatacttgt acaataacat taaagaaaaa cagtgaacct gttgctagac      1380
     catgtagacg tgtaccttta acaattaaaa gtaaactaaa atcaaaactt gaacagttag      1440
     aaaaacaaaa aataatcgct aaagtcaatg gtgctagtga atgggtaaac tccttagtaa      1500
     ttatagagaa accaaataaa accttgcggc tctgtttgga tccacaagaa ctgaataaat      1560
     gtattgaaag agaatttttt gaaattccta gttttgaaga aataaatagt aaacttagtg      1620
     gaaagaaata cttttcagta ctagatttta agaatggatt ttaccaagtt aaattagata      1680
     gtgaatccag taaatttaca gtattttcca ctccatttgg atgttataaa tttttaagat      1740
     taccatttgg tattaaaaca gcaccagaaa tatttcaaaa aataaatcaa aagaattttg      1800
     gagatatcga caatgtaatt atatattttg atgacttact aatagctgct aacagtaaag      1860
     aagaacacga taagatatta cataaagtta tagatagagc tagggaaata ggcgttaaat      1920
     ttaacaaaga gaaagtacag tacagaaaaa ctgaagtaaa atatatggga cacatcttca      1980
     atagagaagg aatgcgtata gataaggata gaataagagc aattgatgag ttaaaaaccc      2040
     caacatgtaa gaaagaatta caaaggctgt taggattagt taactatgta agaaaattta      2100
     tacctaagtt aggtgaaatt gcaagcccaa tatgtgatct tctgagaaaa gatgtagagt      2160
     ttcaatggct ggaagcacat gacaaagcgt taagcactat taaaagtgaa ataaataaaa      2220
     atactgtatt aatgaatttt gatcctacaa aacagattac aatacaaaca gatgcttctt      2280
     tgaatggtat tggatgttgt ttaatgcagg aaggaagacc tgtagcgtat gcttctagag      2340
     gacttaatga aacagaaaag aaatatgcgg tgatagaaaa agaaatgctt agtatcgtat      2400
     atgcaactca aagatttcac aattatatat atggtagaca gattaaagtt ataacagatc      2460
     acaagccgaa tgtatgtgta ttaaacaaac gcatttgtca ggtgcattca ccaagattgc      2520
     aaagattaaa attaaaatta ctaaaatatg acataaaatt agaatactta cctggtaaat      2580
     acttatatgt agctgactgt ttgtctcgaa attacggcaa tgaagtagga aaattagata      2640
     aagatatgaa tgaaatagta cattccgtgg aaaaacattt aagaatgagc gaaaacagaa      2700
     aggaggagtt tagatcacat accaaaagag atgtaatatt aagtgatgta tgtaagtatt      2760
     gtatgaatgg ttggaaatgt aaaaaatatg aaggagagtt aaagatatat tatcagattc      2820
     gaaatgacct tcatgtatac agggatatga tattctataa tgacagggta gtagtaccga      2880
     agagattgcg tgaaagaatg ttacaattat tgcatgaagg acatttcggg ataaaccgta      2940
     catatgatag agcacgcgaa attctatttt ggccagggat gtcaacggat ataaaaaata      3000
     tgattcaaaa ttgtaaagta tgtgaacgat ataggtatgc taatgttaag gaacctttgg      3060
     tagcacacga aataccaaag ctgccatttc agaaaatagc ttcagatata ctcgaatttg      3120
     gcggaaagtc gtacttagtt attgttgatt acttaacgaa gtggctcgaa ataatattac      3180
     ttagaagtaa acaaagttgt gacattatag agacatttaa aaaagtattt gcaacgcatg      3240
     gtattccaga cattgtcata gcagacaata tgccatactc ttcttatgaa tgtcagcgct      3300
     ttgcaaaaga gtatgatttc gaatttcaaa caagcagtcc aggatatccg aaatccaacg      3360
     gacttgctga aagatttgta caaacagcta agaatatcct gaggaaatct gaggatttaa      3420
     atggagcact tatggaatat cgaaatacgc ctattacaag tcttaaaaga tctccagcag      3480
     aactattata tcagagaaaa ttaaaaacga aactacctgt agtggagaaa gtaaatacaa      3540
     aaataagaaa gtttagggat gagctgcaga ataggaataa aataataaag aagtattatg      3600
     acagacatgc gaaaccacga gatgatttta aaaagggaga tactatagtg tataagaata      3660
     aaaagcaatg gcaaccggca gtggtagtaa gtaagcacaa gtctccgcgt tcatacttga      3720
     ttaatactgg ttcaaacata ttaagaagaa atagtaatca tcttaaaaaa tcagtaataa      3780
     aacatgagac aagtgacaca gaaatacata atgagttacc agaaaccagt atcaaccaag      3840
     agataaataa taacaacaat aacattcaga atgattctaa tagagataat gttgcaagtg      3900
     ataatgaggc caaagatgag attagtaagg aaagcgtaag acccgtccga gcgagaaaag      3960
     taccgtctaa atttaataat tacgtattat actaaatgtt aaatttacaa acttatttgg      4020
     tgtgaagcag atattatttt ctagttttgt ttgtattaat ttcatttaaa gttttggtat      4080
     tatatcactt tcgaataagg gaaagg                                           4106
//
ID   Gypsy-4_SI-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   AEAQ01007762;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SI_;
KW   Gypsy-4_SI-I; Gypsy-4_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-164
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01007762; Positions     285     122.
XX
SQ   Sequence 164 BP; 67 A; 20 C; 37 G; 40 T; 0 other;
     tgtaataagt agatggcgac cgtaatgaat atagagggcg ttagagtagc gagcgcgtgc        60
     gtgcgttaga catagagata gaacatacac gattgtagac atacacaata aatatagagt       120
     taaaagagaa caatagttat taataagcat ctaataatat taca                        164
//
ID   Gypsy-4_SiCu-I repbase;    DNA;    INV; 4465 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4465
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5033-5033 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..4384
FT                 /product="Gypsy-4_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSSSDTSAPTTPGARDQDAQFPFPDTSQKQAPPPPNP
FT                 KPKKKKKAADSASSSSSTSTAATGGSTKKKVPKSSSTAQTTQQQSDASTTP
FT                 HHSATPPSNPPPPQHSSTPVTTTKPKKMGTVGNLKPFDPATDEFEDWATTF
FT                 NSFLIANELSVTTHEKRCHAIFISHIGIQSCALLKNLISPDSLEKTPLADL
FT                 INKMQEHYKPTPKALAERYKFMRRHRNAGETVTQYLAALRTLARHCKFTSD
FT                 LDTRLRDQFILGVDHDKLQRAILSKDDDIKLEEVMKTAIAMEAAENSTSII
FT                 RGGSTQMKEVDPSAVHKTEKFRSRKWNKGPSNSSSNNNNKSDSSGQQKSPQ
FT                 QSRGGPSKDTNQSYKCRRCGSTKHKYNDCKHTDAECFKCHKKGHFASVCLS
FT                 SQKKDAHRVTTLKVIQRTNKLNNNSNHPTIFITVQIAGVPHKMELDTGCES
FT                 SLLSKKFWQQLGKPPLQDCPFIFGPYKGPTFKALGEFSTTITYNGTTIQHS
FT                 IPVVDGDSLLGRDLIKLLNFDWSVLNTRSVNNITTTTVKSLLEEYKDVFST
FT                 PTANDRIKGFKASIILKDDAHPRFLKARPLPYAIYEKVDLELQTMEKQGVI
FT                 TKIDTSEWASPLVVVQKPNGKVRITGDFKDTVNSQLHVTQYPIAVPEDVFA
FT                 ISHNCTVFSKLDGSNAYHQLELDENSKDFLVINTHRGLFRYNVLPQGVSSA
FT                 PAIFQRTMDEILKNIQQAKPYMDDTLAADKTLQQHLTTLRTIFEKLRHHNI
FT                 KLNKEKCELAKSTLDFLGHTISAAGISTNSEKVKAIKSIQAPRDVHQLSSF
FT                 MGLVNFYFKFLPKLADVAEPLYALKRQDVQWKWTTKCQAAFDEVKRLITTA
FT                 PTLAHFDPALPIGISCDSSSVGAGVVLFHKYPDGSERPIAFASRTLSDTEK
FT                 RYSQIEKEGLSIIFGITKYYKYLCGRRFLLVTDHRPLLKIFGPKTGLPVYV
FT                 ASRLHHWAVYLQQFQYDVIYRKSADHGNADALSRCITAPATTLDPGVEKQV
FT                 KAVASVLCASLPITSAKIKYFTARDITLSKVIQFQQQGWPAKLSDEDKPLQ
FT                 QYFLRREEMTVVNNVLLWGMRVIIPPSLRTEILNELHSMHTGIVRMKSLAR
FT                 LHVWWPGLDGDIEALCKSCAQCQQKAADPPTSPLHPWQHPEQAWDRLHLDL
FT                 AGPFQNKNWIILVDAHSKWPEVIPVQSTTSQVVIQKLEEVFARFGLPSQVV
FT                 TDNGRQFTSDEFEQFLKNNNVKHILSTVYHPRTNGEAERFVRTFKEAMKST
FT                 DLPINKRLTEFLQKYRSTPHTTTGVPPSELLLGRVIRTRLDLVHPSLKTSV
FT                 SKSQLRQEASHNKKAKIRELXPGQAVWVKSFSKNEEKWSYGRILHPLGPVS
FT                 FLVDVGGRQLKRHIDQMRVAHQQQNDDDEDTASGMDPEAVAATDARRSLDH
FT                 DEDNDD"
XX
SQ   Sequence 4465 BP; 1321 A; 1216 C; 923 G; 996 T; 9 other;
     ttggcgacga ggctattttt tgaagtgcaa gttataaaaa tttacaaaag agctacattt        60
     tgtctttctc taaacggtgc gtgacgtgtt atttttcagt taaattacag acgctgagta       120
     accgatgagt agcagtgaca caagtgctcc cactactcca ggcgccagag atcaagacgc       180
     acagttcccg tttccggata catcccagaa acaggctcct ccacctccaa atccaaaacc       240
     gaaaaagaag aagaaggctg ctgattccgc ctcctcctcc tcttctacat caaccgcagc       300
     aacaggaggc tcaacgaaga aaaaggttcc gaaatcctcc tccactgctc aaactacaca       360
     acaacaaagt gacgcctcaa caactccaca tcattcagca acacctccat ctaatccacc       420
     accgccacaa cattcttcta caccggttac aactacaaaa ccgaagaaaa tgggcaccgt       480
     tggtaatctc aagccgtttg acccggccac tgacgaattc gaagattggg cgacaacctt       540
     caattccttt ctaatcgcta acgagctgag cgtcaccaca cacgaaaaga gatgccatgc       600
     catcttcata tcacacattg gcattcagtc ttgtgcgtta ttaaagaatc taatctcgcc       660
     agattctttg gagaaaacgc cccttgcaga cttaatcaac aagatgcagg agcattacaa       720
     gcctacacct aaggctttgg ccgaacgcta caaatttatg cgtcgccacc ggaacgcggg       780
     tgaaacagtc acccagtacc tggcagcttt acggacgctc gccagacact gcaaattcac       840
     gtcggatctc gacacacgtc tccgagatca gttcatcttg ggagtkgacc acgacaaact       900
     acaacgtgcc atcctctcca aggacgacga catcaagctg gaggaagtga tgaagacagc       960
     tatagccatg gaagctgccg aaaacagtac ctccataatc cgaggtggaa gtacacaaat      1020
     gaaggaagtc gacccctccg ctgtacacaa aacagaaaag ttcaggtctc gtaagtggaa      1080
     caagggcccc tccaactcct cctccaacaa caacaacaag tcggatagct ctggacagca      1140
     gaaatctcca cagcaatccc gtggtggtcc ctccaaggac accaatcaat cctacaaatg      1200
     ccgacggtgc ggctcaacca aacacaagta caacgactgc aagcacacgg acgccgagtg      1260
     ttttaagtgc cacaaaaagg gtcactttgc cagcgtctgc ctctcatccc agaagaagga      1320
     tgcccaccgt gtcacaactc taaaagttat ccaacgcacg aacaagttga ataataactc      1380
     taatcaccca actattttta ttacagttca aatagcgggt gtaccacaca agatggaact      1440
     ggacactggc tgcgagtcca gcttactttc caagaagttt tggcagcagt tagggaaacc      1500
     gcccctccaa gactgtccat tcatctttgg cccatacaaa ggccctacat tcaaagcact      1560
     tggggaattc agcacaacaa ttacctacaa cggaactaca atccagcaca gcatwccagt      1620
     ggttgatggc gattcacttc ttggacgtga cctcatcaag ctactcaact ttgactggag      1680
     cgtcctcaac acacgctcag tcaacaacat tacaacaact acagtcaagt ctcttctgga      1740
     ggaatacaag gatgtattct ccacccccac cgcaaatgac agaattaagg gattcaaggc      1800
     ctccataatt ctgaaggatg acgcacaccc tcgttttctc aaagctcgcc ctttgccata      1860
     cgccatttac gagaaagtgg atctcgagct gcagacaatg gagaaacagg gcgtcatcac      1920
     gaaaatagat acctccgagt gggcgagtcc tcttgtcgtc gtgcagaaac cgaacggcaa      1980
     agtccgcatt actggagact ttaaggatac ggtcaacagt cagctacacg tgactcagta      2040
     tcccatcgct gttccagagg atgtcttcgc aatttcgcat aattgcacag ttttttccaa      2100
     actggatggt tcaaacgcct accatcagtt ggagctggac gagaattcaa aggattttct      2160
     cgtcatcaac acgcaccgag gtttgttccg gtacaacgtg ttaccgcaag gagtatcttc      2220
     agcccctgca atttttcaac ggaccatgga cgagatcctg aaaaatatac agcaagctaa      2280
     gccgtacatg gacgatactc ttgccgccga taagacactt caacagcacc ttacaacttt      2340
     acgcacaatt ttcgagaaat tacgacacca caacatcaag ttgaacaagg aaaagtgtga      2400
     acttgccaag tcaacactgg acttccttgg tcacactatt tctgcagcag ggatttctac      2460
     aaattcggaa aaagttaagg ccatcaagag catccaagct ccacgagatg ttcaccaatt      2520
     aagcagtttc atgggccttg tgaactttta ttttaagttt ttaccaaaac ttgctgatgt      2580
     tgctgagccc ctctacgcwc tgaaaagaca ggatgtacaa tggaagtgga ctacaaaatg      2640
     ccaggcagcg tttgatgaag tgaagcgact catcaccaca gcacctacac tggctcactt      2700
     cgatcctgct cttcccattg gaatatcatg cgattccagc tctgtcggcg ccggcgtggt      2760
     tctatttcac aaataccctg atggttcgga acgccctatt gctttcgcct ccaggacgct      2820
     ctcagacact gaaaaacgtt attcccaaat cgagaaggaa ggcctctcca tcatctttgg      2880
     tatcaccaag tactacaagt acctgtgcgg ccgtagattc ctcctcgtta cggaccatcg      2940
     cccgctcctc aagatctttg gtccgaaaac cggcttacca gtttacgttg catcacgact      3000
     ccatcactgg gctgtmtatt tacaacagtt ccagtatgac gtcatctaca ggaagtcagc      3060
     cgatcatggg aatgctgacg ccctttcamg atgtatwaca gcaccagcta caacattgga      3120
     ccctggcgtt gaaaaacaag tcaaggccgt tgccagcgtc ctttgtgcat ccttaccmat      3180
     caccagcgca aaaataaaat atttcactgc gcgtgacatt actctctcaa aagttatcca      3240
     gttccaacaa caaggatggc cagccaagtt atctgacgaa gataaacctc tacaacaata      3300
     ctttttgaga agagaggaaa tgacggttgt caacaatgtc ctcctctggg gcatgcgcgt      3360
     catcatccct ccctctcttc gtactgagat cctcaacgag cttcattcaa tgcacacagg      3420
     cattgtaaga atgaagtctc tcgcccgact acacgtgtgg tggcctggat tggacggcga      3480
     cattgaagcc ctgtgcaagt cttgcgcaca gtgtcagcag aaagcagcag atcccccaac      3540
     cagcccactt catccttggc agcatccaga acaggcatgg gatagactac atctggattt      3600
     ggcaggtccc tttcaaaaca agaattggat tattcttgtg gacgcccact ccaaatggcc      3660
     agaagtcatc cctgtccaaa gtacaacctc tcaagtggta atccaaaagc ttgaggaagt      3720
     ttttgccaga ttcggattac catcacaagt ggtaactgac aacggtcgtc agtttacctc      3780
     agacgagttc gagcagttcc tgaaaaacaa caacgtcaaa cacatcctct ccacwgtcta      3840
     tcaccccaga accaacggtg aagctgagag gtttgttagg accttcaagg aggcgatgaa      3900
     aagcaccgac ctccccatca acaaacgctt gacggagttc ctccaaaagt accggagtac      3960
     tccccacact acaacaggag tccctccatc tgagcttctt cttggcagag tcatcaggac      4020
     tcgtcttgac ttggttcacc caagcttgaa gacaagtgta agcaagtcac aattgcgcca      4080
     agaagccagc cacaacaaga aagccaaaat tcgggagctc cwtccaggtc aagcagtgtg      4140
     ggtcaagtca ttctcgaaga atgaagagaa gtggtcctac ggaaggatcc ttcatcccct      4200
     tggcccagtg tcatttttgg tcgacgttgg aggacgccaa ctgaagcgcc acattgacca      4260
     aatgcgggtg gctcatcagc agcagaacga cgatgatgaa gacaccgcat caggaatgga      4320
     tccggaagcg gtcgccgcta cagacgcacg acgcagcttg gaccatgacg aagacaacga      4380
     tgattagcag cagcagcagt ctacaataat tatattcttt tcaattttgt tacaattaaa      4440
     tttaaaaaga atgaaggaga ggaaa                                            4465
//
ID   Gypsy-4_SiCu-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-298
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5082-5082 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 298 BP; 85 A; 97 C; 34 G; 82 T; 0 other;
     tgtggtatct tctcatactg ccccaaacgg tggtcacgcc acctctgcca aaataccaca        60
     cacaaatacc tcgtgctcct ccttcctcgc ctgctctaca cacacgctgc ctgcacgctg       120
     ctcgtcagac ctaacttgcc ttttgcctgg agcacatctc cagtaaaact aatacctact       180
     tactattctc ttgtaaataa acttgttact ttaaatggca aagaatacca ctcacctttg       240
     acctacgtac acttatttaa ctaatcatac atcatcacaa ccctacaaat acatcaca         298
//
ID   Gypsy-4_SiOr-I repbase;    DNA;    INV; 6542 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-6542
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 341-341 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..1967
FT                 /product="Gypsy-4_SiOr-I_1p"
FT                 /translation="MEKESFKVNHLRQVELDYELLIRGIKTSKNVDSKRKI
FT                 LSGLLSREVNNPFCLVNMEDYPVSFDQEISEIKATLDSISLSISEFEGGVN
FT                 DSMFKVIRSRLAHLAGRIKRIILDENRADAETIQTDVYTSCYQLEADLLVK
FT                 TSDINETLNVSSVPSGPVINVPPPIVTYVAKPCPVSDWPIKFNGNPQDLFS
FT                 FLETVTELSESRKVSEQDLFSSAVELFTGNAFIWYRSIKQHVADWKSLVER
FT                 LKKDFLPPDNDDNIWSQIKSYKQRKNESILIFIATLENLFSRLSKCPSEVT
FT                 KIKIIRQNLLPEYITQLALVDVLSVSELSNLCRKLENAKHQNEKHSRNLNV
FT                 SELNTTPDSSSFDSRRVQFSKKSKNVNAQNKNKNTTARSPCSAVASSSSDP
FT                 DMVNTSSMPRSVENSGKETASRLVCWNCSGPNHTFHDCRQKRRVFCFKCGN
FT                 LGVKSPACPKCSKN"
FT   CDS           1937..5299
FT                 /product="Gypsy-4_SiOr-I_2p"
FT                 /translation="ITGVSKMFKKLIGRTRVSGHVVQKKFKPRNLFSESDW
FT                 KKWLLCVKNFYRSTTTNHKVSPLFCPKVSDNRPYILVEILGVEICGLLDFG
FT                 STSTVIGAAGIPVIENLNLNIREPTHLSISTADNTEKKIVGVVDLPLVVDG
FT                 SCQVISAIVVPSLPHSFIFGCDFILRFDLMEDLKKNWWEVNSRSQPKFSSF
FT                 PYNTHAVNMLCTLDDLTPNQRKPAELLINSFDSINSDHGLGRTDKITMSID
FT                 TGDAKPFRQKPFLMSPYMSKILNEELNDMLKLGVVEPSNSPWCSPVLLVKK
FT                 PTGEFRFCFDGRSLNQVTKYDSYPMPNIDRILNSLRGATYISSIDLRKSFW
FT                 QIPLSEDSKPKTAFSIVGRGQFQFTTVPFGLCNAAQTQQRLVDAIFGPRYE
FT                 PHIFCYLDDIIICSPSFEEHTKLLSEVRDKLKDANLTINIKKCEFFKKSLK
FT                 FLGYIVGSNSLRTDPEKISAMLNFPRPTTTTEIKRFIGLCSWYRRFIRNFS
FT                 TLVSPINDLLKGKKKGQGIQWSPAAEDSFLKIKQLLVSAPILSQPDFSKPF
FT                 IIETDASNTGLGGVLLQKINDEDRVISYASRSLTRSERNYSVTERECLAVI
FT                 FSLEKFRPWIDGVRFTVCTDHYSLLWLNKLQNPTGRLARWAVRLRQFTFDL
FT                 VHRKGSHNVVPDFLSRIPGDDSPSDISDNDSFVCPQISILNIDLDHTDAWY
FT                 ETMKRKILASPSSFPQWKVEDGFLFKFIPVQLPFSSNLQEWKKVVPRPQRR
FT                 NIIESCHNPPTCSHLGFYKTLSRLQEQFYWPKMRADVLKFVRSCRVCGAQK
FT                 SSNTMPLGRMGREKQVNMPFQTIALDLMGPFPRSKKGHKWLLVVGDWFSKY
FT                 VLLCPLRSSKSPYVVKYLESEVFLTYGVPQYIICDNGPQFVAKEFRDLAKK
FT                 YQVQKIWYNAVYSPQCNFVERMNKTIGTAIRTYVKQHTDWDVQLSNIQFAL
FT                 NTSKHEVTGFSPSFLVFGRHIPISGNYYGQVKFSEDFEIMPGDRNSYASEL
FT                 KNLYSVFSEVRKKLHAAYERNSKSYNLRRRDLSFQVGDLVWRRNKVLSNAG
FT                 VNFSAKLAPRFVLSSVRKKISNLVYVLVDEDGNNAGRWHIKDLKPYQGHMI
FT                 DDDDTGNVSTTSQ"
XX
SQ   Sequence 6542 BP; 1910 A; 1024 C; 1185 G; 2423 T; 0 other;
     caaatagaag aataaagaat atgacgccct gtcacgtggg gctttacttg gtttaattgg        60
     ctcgacttag tttaattggc tcaatttaat ttaatttgct tcacttattt ggtagacttt       120
     gtaaaataat ttttgttagg ctcagataaa ttttctataa ggcaaagact atagttttga       180
     aattttattt tcattatttc tgtaattaaa ttctaataat ttcagttcaa cagcaatttt       240
     tttgttttat aaattcttga gggtgtttgt ttatctattt aaaacccaga taaataactt       300
     aatacgtatt tctgactaca ttttttattg acgtttcgat tttgatttaa atatacaggt       360
     atggttatat tttgaatata cagagtggac ataatttcag tatacagggt agcactgtta       420
     gtatttcata aaattttgga atttgtttcg aatacttgaa tcttttttgg ttttgacatt       480
     gaacatattt tctttctgat agtttgcgcc gaatcataac agctttttgt taaaattagt       540
     aagtttttct gaatcattta gtctttagta tttcatatag ctgaattaca atggagaaag       600
     aatcttttaa agttaatcat ttacgacaag tagaattaga ttacgaactt cttattaggg       660
     gtattaaaac atctaaaaat gttgacagta aacgtaaaat tttgtcaggt cttttaagta       720
     gagaagtaaa taaccctttt tgtttagtta atatggaaga ttatcctgtt tcttttgatc       780
     aagaaatttc agaaattaaa gcaactttag attcaatttc cttgtcaatt tctgaatttg       840
     agggtggagt aaatgattca atgttcaaag ttataagatc tcgtcttgcg catttggctg       900
     gtagaatcaa gagaataatt ttagatgaaa atcgtgctga tgcagaaact attcaaactg       960
     atgtttatac tagttgttat caacttgaag ctgacctgct tgtcaaaact tcagacatta      1020
     atgaaacttt aaacgttagt tctgttcctt caggaccagt tattaatgta ccgcctccta      1080
     ttgttactta tgttgctaaa ccttgtccag tgtcagactg gcctattaaa tttaatggta      1140
     atcctcaaga tttattttca tttttagaaa ctgttactga gctttctgaa tcacgtaaag      1200
     ttagtgaaca agatttattt tcttctgcag tagaactttt tactggtaat gcttttattt      1260
     ggtatagaag tattaaacaa catgtcgcag attggaaatc tcttgtagaa agattaaaga      1320
     aagacttttt accaccagat aatgatgata atatttggtc acaaattaaa tcttataaac      1380
     agcgaaaaaa tgaaagtatt ttaattttta tagcaacttt agagaatctt tttagtagat      1440
     taagtaaatg ccctagtgag gttactaaaa taaaaatcat tagacaaaat ttacttcctg      1500
     aatacattac tcagttagct ttagttgatg ttttatctgt gtctgaactg tctaatttgt      1560
     gtagaaaatt agaaaatgct aaacatcaga atgaaaaaca ttctagaaat ttaaatgttt      1620
     ctgaattaaa taccactcct gattctagct cgtttgattc tcgtcgcgta cagtttagta      1680
     aaaaatctaa gaatgtaaat gctcagaaca aaaataaaaa tactactgct aggtctcctt      1740
     gttctgctgt agcgtcgtcg tcttctgacc ctgatatggt aaatacttcg agtatgcccc      1800
     gatctgtaga aaattcaggt aaggaaacag cttcgcgttt agtttgttgg aattgttctg      1860
     gtccgaatca tacgtttcat gattgtcgac agaaacgtag ggttttttgt tttaaatgtg      1920
     gtaatttagg ggttaaatca ccggcgtgtc caaaatgttc aaaaaactaa tcggacgaac      1980
     tcgtgtttct ggtcatgtag ttcaaaaaaa attcaaaccc agaaatttat tttcagaatc      2040
     tgattggaaa aagtggttat tatgtgttaa aaatttttat agatccacca ctaccaatca      2100
     taaagtttct cctctttttt gtcctaaggt atctgataac agaccttata ttttagtaga      2160
     aattcttggc gttgaaattt gtggtctttt agattttgga agtacatcta cagttattgg      2220
     agctgctggt attcctgtta ttgagaatct aaatttgaat attagggaac caactcattt      2280
     gtcaattagt actgcagaca atactgaaaa gaaaatagtt ggtgtagtcg atctaccttt      2340
     agtcgttgat ggttcatgtc aagttatcag tgctattgta gtaccttcat tgcctcatag      2400
     ttttattttt ggttgtgatt ttatcttgcg gtttgatctt atggaagatc ttaagaagaa      2460
     ttggtgggaa gtcaactcta gatctcagcc aaagttttct tcatttccct ataacactca      2520
     tgcagtaaat atgttgtgta cccttgatga tttaacacca aatcagagaa aaccagctga      2580
     acttcttatt aactcttttg acagtattaa cagtgatcat ggtcttggtc gtaccgataa      2640
     aattactatg tcaattgaca ctggtgatgc caaaccattt cgtcaaaaac cttttttaat      2700
     gtcaccttat atgtcaaaaa tcttaaatga ggaattaaat gatatgctta aacttggtgt      2760
     tgtggaacct tctaatagtc cgtggtgttc cccagtgctt ttagttaaaa aaccaactgg      2820
     tgaatttcgt ttttgtttcg atggtcgatc tttaaatcag gttacaaagt atgactccta      2880
     ccctatgcca aatatagata gaattttaaa ctctcttcgt ggagctacgt atatttcgag      2940
     tatagatttg cgtaaaagtt tctggcaaat tccattatca gaggattcaa aaccaaaaac      3000
     tgctttcagt atagttggta gaggtcaatt tcaattcact acggtgccat ttggtttgtg      3060
     caatgccgct cagacacaac aaagacttgt tgatgctatt tttggaccac gttatgaacc      3120
     acacattttt tgctatttgg atgatataat catatgttca cccagttttg aggaacatac      3180
     caaattgctt tctgaagtta gagacaagtt aaaagatgct aacttaacta taaatataaa      3240
     gaagtgtgag tttttcaaga aatctttaaa atttcttgga tatattgttg gctctaattc      3300
     attaagaact gatccagaaa aaatttcagc aatgttaaac tttcctcgcc ctaccacgac      3360
     gactgaaatt aaacgattta taggtttgtg tagttggtac cgtcgtttta taagaaattt      3420
     ttcgacatta gtttcaccca ttaatgattt gttaaaaggt aaaaagaaag gtcaaggaat      3480
     tcagtggagt cctgccgctg aagattcttt tttgaaaatt aaacaacttc tggtttctgc      3540
     tccaattttg tcccagccgg atttttctaa accctttatt atagaaacag atgcatctaa      3600
     caccggtctt ggtggagttc ttctacaaaa aattaatgac gaagaccgtg taatttctta      3660
     tgctagcaga tctcttacta gatccgagcg gaattatagt gtaactgagc gagaatgctt      3720
     agctgttatt tttagtttgg aaaaatttcg tccttggatt gatggcgtac gttttaccgt      3780
     ttgtacagat cattactctc ttttgtggct taataaatta cagaatccta ctggtcgtct      3840
     tgctagatgg gctgtcagac ttagacagtt tacttttgat ttagttcatc gtaaaggttc      3900
     acataacgta gttcctgatt ttcttagtag aatacctggc gatgattctc cttcagatat      3960
     ttcagataat gattcctttg tatgtccaca aatttctatt ttgaatatag atttagatca      4020
     tactgatgca tggtatgaga caatgaagcg aaagatttta gcttcgccta gttcatttcc      4080
     acagtggaaa gttgaagatg gttttctttt taagtttatt ccggtacagc taccattttc      4140
     atcaaatctt caagaatgga agaaggttgt tccacgtcct caacgtcgta atattatcga      4200
     atcatgtcat aatccgccaa cttgttcgca tttgggtttc tataagactt tatcaagact      4260
     tcaagaacaa ttttactggc ccaagatgag agccgatgtt cttaaatttg ttaggagttg      4320
     tcgtgtttgt ggagctcaga aatcttcaaa tactatgccg ttaggtagga tgggaagaga      4380
     aaaacaagtt aatatgcctt ttcagacaat cgctttagat cttatgggtc cttttcctag      4440
     atcaaaaaag ggtcataagt ggcttttagt tgttggcgat tggttttcga agtatgttct      4500
     tctgtgtccg ttacgttcat caaaatctcc gtatgttgtg aagtatcttg agagtgaagt      4560
     tttccttact tatggagtac ctcaatatat aatttgtgat aatggtcctc agtttgttgc      4620
     taaagagttc agagatttag caaagaaata tcaagttcag aagatctggt ataatgctgt      4680
     gtattctcct caatgtaact ttgttgagcg aatgaataaa acaataggaa cagctattag      4740
     aacttatgtt aaacaacata cagattggga tgttcaactc tctaatattc agtttgcttt      4800
     aaacacttct aaacatgagg tcacaggttt ttctccttcg tttttagttt tcggtaggca      4860
     tattcccatc tctggtaatt attatggtca agttaagttc tctgaagatt ttgaaattat      4920
     gcctggcgat cgcaactctt acgcttcaga actcaaaaat ctttatagtg tctttagcga      4980
     agtccgtaag aaacttcatg ctgcttacga aagaaactca aagtcttata atttgcgtag      5040
     acgtgatcta tcttttcagg ttggtgattt ggtttggaga cgtaataagg tcttatcaaa      5100
     tgctggtgtt aacttttcag ccaagttagc ccctcgtttt gttttatctt cagtacgaaa      5160
     gaaaatttcg aatttagttt atgttttagt agacgaggat ggtaataacg caggccgctg      5220
     gcatataaaa gatcttaaac cataccaagg tcacatgatt gacgacgatg atacaggaaa      5280
     tgtctctact acgtcacagt aatttaaata atctattatg tccgattcct ttttagggtt      5340
     tagtctaaag gatacataga ttatatttta gtttttttag tttatattaa aaagttatac      5400
     aacaattcgc ttatcgtttt tacggatttg tcgcgaatca gcataactat tgtgttattt      5460
     agtttttttg cgtatatttt cagtataata tagtatttct atttagaaat gcgagcatat      5520
     agcagtattt ttctttttcc gagtattcta cagattacct aattttgagt aaatattttg      5580
     tgggatggta attctgttaa tcactcatat ggttttgtgc catttgctcc attctatgac      5640
     attcagttca caagaatctg aaatttaagc aattcttgta ttttgagaac acgacttcgt      5700
     gacaaaacga aaagttgtta tgattctgat tgcaacctaa tggtgagaca tagctgacct      5760
     cataacttcg taagtttact gtgtattggg tatgattgtg attttctttc catatttgca      5820
     atagcgtttc ataggctgga atcctatgtt acggatattt tgggtcattc gtgacaatct      5880
     tttctctctt cctttatatg tttatctatt gtgatttcta ttgttatttt cctttctttt      5940
     tctcatacag gtgagttacc ttgaatggtt aaccggtgag cacacaggtt gtggcgaagg      6000
     tagtttgttt tggtcacgcc aaacttacct cttatagtga tccgtagcat ggcttttgtt      6060
     gaggttcttt tgttgtttgt tttgttctcc gcttccttgg gtgtgagggg tcgcatgact      6120
     gattacacgc gatttgtgaa tctttcgttg cctcacacta ggtgggttga gtacggacaa      6180
     tcagcttgag gatttcttca ggaacatctg cgcttccatg ggattctttc tttctttctt      6240
     ttcctatccc atacttttag gtttagattt agttttagtt ttcatatata gtttatatga      6300
     atgtttttat ttggattata tggtgatttg actttcccga ttgtgtaatc tcactgattt      6360
     gacataccga ttgcgactta ccaatagtga ctcctttatg gacgtgtgat acacgaagtt      6420
     atcatccacc aaattttcat ttgaaaaatc caaaaccctg tacaaactta gtttagtttt      6480
     cctatgtggt gtttgggcga aagtcctctt tgagggcctt tctttttttt ggaggggggc      6540
     ag                                                                     6542
//
ID   Gypsy-4_SiOr-LTR repbase;    DNA;    INV; 1598 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1598
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 329-329 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1598 BP; 461 A; 272 C; 263 G; 602 T; 0 other;
     tgtagcgttt tatttttctt tttataaaat tccaaatttt aatattgctg gcgccatcta        60
     ttcgctagat gttaaacttc attcagtaca ggtagcggtt cctttccata aaaacaaatt       120
     tcattcagta tagacgatag agttcactta attgcctttg gtcatatgac ctgtcaattc       180
     gaagacttcc gttttgcgaa aaggaggagg aggctttttc cgagagattg agatcagaaa       240
     aagacgcgtg gttcagcgtc cgacgaatct cagagaaaag ggctttctga aacacttttc       300
     ctaacagtaa aggcacgggt atccaaaggt ggagatttga aatcctgtag aatatactgt       360
     tcagagccta gttcgtgttt ttttggcctt ttcctggaat aagatcacag taagtgtatc       420
     taccattttg tatcgccatg tctaactaaa ttttatttca gttattcccg ttttttattt       480
     attttgataa tgtttgattg tgcattactg gtttggatca gcatatagtt tggctatatt       540
     ttggaatgtg tacagctgat tttcagaccg taagttattt tttggtattc ggtgactgtt       600
     ctgagagttt tttttataga gtaactggcg tataagaaat tgacgtataa gtaattggca       660
     tatgagtaac cacttttgag acagtattta tgactctaca tttattctac tgatatcgaa       720
     gactcctgct actatcgaag agtctacatc cacttccgtt agtctggaga ctgcctgcct       780
     acctgttcac tacgtcacaa aataaaaaaa aaaatacaga taagttctaa gttcaacaca       840
     caaggtattc cctaaatttt ttttactttg agacaatatt ttgaatatct ctgtaaattg       900
     ttgtcattta ttccatatat tatagtcaaa atttaccttt tagttaacat tataagtcat       960
     gctttgtcct taacggtacg ttttacttca gtatgatctt ttatgtgaga atcgctaaca      1020
     cggattcatt tttgaaggtt attgtacacg acttgtttcg aaacatcatc gtattggtac      1080
     ttacataaat ttcacctgtt tatatattac gtagtatagt atactggaga gaactctaac      1140
     taaatttgag tttacttaaa gtaactaacg atttcattgg gataattgaa actgggttta      1200
     aactgattga taattgtgtt cgtttttaaa taaatgttca acgtaggata gttatatctg      1260
     acttttattc ttgatgaaca taatagaccc ttattgctgt tgattatttt attttagcta      1320
     tttcatgatc aaattttctt actggtttct tactttacct tttcataccc aaagtaagtg      1380
     gcgccctttt tactgtcttt gaccattact atttgaatac ttaacatcaa ttttagaatc      1440
     tttgcagcct atacattatt acttttattt tattatttaa caacattatt aagtcaccac      1500
     aggtcacaag ccttacctac gaacccagct ctcctctaac cctgagcaac ggataccttt      1560
     ttctttctgt ttgagtgatg acagaaaaag tcgtcaca                              1598
//
ID   Gypsy-4_SpEx-I repbase;    DNA;    INV; 4709 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4709
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4077-4077 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.1% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..1221
FT                 /product="Gypsy-4_SpEx-I_1p"
FT                 /translation="MDQSSSEPCGVGDQDGVQGLNTRMKSLNISSDSTNNN
FT                 AEAWKRWSQQLDLYLLATGLDRAPEKRKIAILLHLIGEKGLNIYNTFNLNI
FT                 DKTTLAEVKQKFNNFFEPRRNITMCRHMFFTRRQKQSESIEGFLADLENKS
FT                 QDCEFGTLKESLIRDIFIANLHMDLAHVRQRLLQEPDLTYQRMRELARTLI
FT                 VAQQDAEKIVSSSEKQENVMHLRRRSRSRGDRRQRASPVGRQGPGTRQSPN
FT                 PERRTRPCSRCGQSHRYKCPAQGVQCRSCNSFGHFAKFCFKNKNVSRLESF
FT                 NSNSNSSQDHYFIGTLNSHCQSHIKSNKSTKYSXYNVRSSKKSASTQTHCQ
FT                 SRRTVSQDQLQSRNDSGDELMSCLRDLTETHIVSLRNHSHVKFL"
FT   CDS           1196..4561
FT                 /product="Gypsy-4_SpEx-I_2p"
FT                 /translation="EIILMSNFCDDSGDNVMSKRSKKNLGDENSHLSEKSI
FT                 LMSYGHNINKCCDSQSVYLNDEYRHMSEESPHTLTPPHQSHQSLNNINTVQ
FT                 SEPNINKSKQSWNINLKVGNLKFNCIIDSGADLNIMSKQTFNYLKHKLKQL
FT                 SIVKSHINVTGFSGKSIPIMGKVNIKCNLILNNNNVSENIVFIVANLECPN
FT                 VLGLPTCERLGIIKRVFSVSKQNFCQQILTKYNDVFQGLGCLPPVCHLKLK
FT                 PDAVPCVDPPRRVPFALLGKLREELDRMESMKVIEKVTKPTEWVNSIVITV
FT                 KSSGQLRICLDPRNLNKNIIREIYPLKSIDEIRSQLVGAVCFSHLDAFSGF
FT                 WMLKLDEYSSKLCTFQTPFGRYKYLRLPFGINASSEIFQRVMMNLFGDLEG
FT                 VLIFIDDILVYGPNESVHNERLHKVMQRARQVNLKFNKSKCKFLVSEVCFL
FT                 GYIFSKDGARVDQEKVKAIVNMPTPKNVKELQRILGMINYLGPFISNLSEK
FT                 TQILRNLLKKDSVWSWDENHNKCLKGLIDEITKSPVLAHYNPNIPLVLSVD
FT                 SSKSALGAVILQNNKPIAYSSKTLTTTQSRYAQIEKELLAIQFGCEKFHQY
FT                 VYGHRVTVHTDHKPLVYLFDKPLHDVPARLQRMMLTLQKYDLKVIHVPGKQ
FT                 MFISDTLSRAALKDHYIPENESEITCHVNLMHSNLAITKDYSTKLSQQTNK
FT                 DESLQLLKKYYYEGWPKSKNKVSQLVKPYWNVQAEIHVVKDLLFKGSKLIV
FT                 PQSMYKEMLDKIHEGHQGINKCLKLARDSLYWPNMSVDIKNLVEQCLICAK
FT                 FKPANQKEPLQNFEINKYPWQQVGIDLMYFDGLSYLIVTDYYSKYIEIALL
FT                 NKNSTAKNVITHLKSIFARHGIPLSLVSDGGPPFQSLEFKNFLHEWDIEHV
FT                 VTSPYHAQSNGQAESSVKIVKNMLKKCKENSSDPYIALLQYRNTPKNNLPS
FT                 PAQLLMSRNLRDNVPKSYKKLKPKVVTFKDYKECVTKNNDCKSKYYNRSAK
FT                 PLPLLYPNDHVYFKRQPSCNWEQAIVKQRLANNRSYVVEDVNGVRYRRNRI
FT                 HLRHKFSPMLSNSSSSSSLSSQGREDGDSQKAGPQELSSRSSSSQFVTRSG
FT                 RIVKPTRRLIEEID"
XX
SQ   Sequence 4709 BP; 1655 A; 778 C; 898 G; 1377 T; 1 other;
     tggtgtcaga agtgaaaaga acaataagaa aaattcattt cacgtaagtc ggtcacaaaa        60
     atggaccagt cgagttccga gccatgcggc gtgggcgacc aagatggcgt ccaaggtctc       120
     aacacgagga tgaaatcatt aaatatttcg tcggattcca caaataataa tgcggaagcg       180
     tggaaacggt ggtcgcagca actggaccta tatctactcg ccacgggttt agacagggca       240
     cccgagaaga gaaaaatagc catactgctg catcttatag gtgagaaagg cctaaacatt       300
     tataatacat ttaacctcaa catcgacaag accacgcttg ccgaagtgaa gcagaaattc       360
     aataattttt ttgagccccg gaggaacata accatgtgtc gtcacatgtt cttcacgagg       420
     aggcagaagc aatccgagtc catcgaagga ttcctggcag acctggaaaa taagagccag       480
     gattgtgaat tcggaacgct caaggagtcc ctcatcaggg atattttcat tgccaatctg       540
     cacatggacc tggcacatgt ccgtcagaga ttgcttcagg agcctgatct gacatatcaa       600
     aggatgcgcg aactggcgag aacattaatc gtcgcacagc aagatgctga gaaaatcgtc       660
     agttccagcg agaaacagga aaatgtaatg catctacgtc ggaggagccg tagtcgagga       720
     gatcgtcgac agcgagcttc accagtcggt cggcagggtc ctggtacgag gcagtctccc       780
     aaccctgaaa ggcgcacgag gccgtgtagc cgctgtgggc agtctcatcg atacaagtgc       840
     ccagcgcagg gagtccaatg caggtcatgt aattcatttg gtcatttcgc taaattttgc       900
     tttaaaaata aaaatgtaag tcgtttagag tcgtttaatt caaatagtaa cagtagtcag       960
     gatcattatt tcattggaac attaaacagt cattgtcaaa gtcatataaa gtcaaataaa      1020
     agtacaaaat atagtcamta taatgttagg tcaagtaaaa agtcagccag tacacagacg      1080
     cattgtcaat cgcgtcgaac ggtctcacaa gaccaattac agtcgaggaa tgattccggt      1140
     gatgaactta tgtcatgtct gagagatctc accgagactc atattgtcag tctgagaaat      1200
     cattctcatg tcaaatttct gtgatgatag tggtgataat gtcatgtcta agaggtctaa      1260
     aaagaacctc ggtgatgaaa acagtcacct gtctgagaaa tctattctca tgtcatatgg      1320
     tcacaatata aacaaatgtt gtgatagtca aagtgtgtat ctcaatgatg agtacagaca      1380
     catgtctgag gaatcacctc acacgctcac accaccacat caaagtcatc agtcattgaa      1440
     caacattaat acagttcaat cagaacctaa cattaacaaa agtaaacagt cctggaatat      1500
     taatttaaaa gtaggtaatt taaaatttaa ttgcatcata gattcaggag ctgatttaaa      1560
     cattatgtcg aagcaaactt ttaattattt aaaacataag cttaaacagt tgtcaattgt      1620
     caaaagtcat ataaatgtca caggatttag tggcaaatca atacccatta tgggaaaggt      1680
     caatattaaa tgtaatttaa tattaaataa taacaatgtc agtgagaaca tagtgttcat      1740
     agtcgcaaat ttagagtgtc ccaatgtctt aggtcttcct acatgtgaaa ggttaggaat      1800
     aattaaaaga gttttttcag tgtctaaaca aaatttttgt caacaaattc taacaaaata      1860
     caatgatgtc ttccagggtc ttggctgtct acctcctgtc tgtcacctga aactcaaacc      1920
     tgatgcagta ccatgtgtgg atcctcccag gagagtacca tttgcgttac ttggaaagct      1980
     acgcgaggag ttggatcgca tggagagcat gaaagtcata gaaaaagtca ctaagcctac      2040
     agagtgggtg aatagtatag ttataactgt aaaaagttca ggtcagttac gaatttgttt      2100
     agatcctaga aatttaaata aaaatatcat aagggaaata tatccactta agtcaattga      2160
     tgagataaga tctcaactag ttggagctgt ctgtttttct catttagatg cattttcggg      2220
     tttttggatg ttaaaattag atgaatatag ttctaaatta tgtacttttc aaacaccatt      2280
     tggtagatat aaatatttaa ggttaccttt tggaataaat gcatcatcag aaatatttca      2340
     aagagttatg atgaatttgt ttggtgattt ggaaggagtc ttaatattca ttgatgacat      2400
     tctagtctat ggcccaaatg agtctgtaca taatgagaga ttacataaag tcatgcaaag      2460
     agcacgtcaa gttaatttaa aatttaacaa atctaaatgt aaatttctag tgtctgaagt      2520
     ctgtttccta ggttatatct ttagtaaaga tggtgcaagg gttgaccaag agaaagttaa      2580
     agcaattgtc aatatgccta caccaaaaaa tgtcaaagaa ttacaaagaa tattaggtat      2640
     gatcaattat ttaggtccct ttattagtaa tttgtcagaa aaaactcaaa ttttaagaaa      2700
     tcttttgaaa aaggattctg tctggtcttg ggatgagaat cacaataaat gtcttaaggg      2760
     tttaatagat gaaatcacaa agtcacctgt cttagctcac tataacccca acattccatt      2820
     agtcttgtca gtagattcgt ctaaatcagc attgggagca gtcattttac aaaataataa      2880
     acccattgct tatagttcta aaactttaac cacaacccag tcaaggtatg ctcaaataga      2940
     gaaagaattg cttgcaattc aatttggttg tgaaaaattt caccagtatg tatatggtca      3000
     cagagttaca gttcacacag atcacaaacc tttagtctac ctgtttgata aaccattaca      3060
     tgatgtacca gctaggttac agcgaatgat gttaactttg caaaagtatg atttgaaagt      3120
     tatacatgtc ccaggtaaac aaatgttcat atctgatact ttgtcgagag cagccttaaa      3180
     agatcattat attccagaga atgagtctga aataacctgt catgtcaatt taatgcattc      3240
     aaatttagca attactaagg attacagtac aaaattgtca caacaaacta ataaagatga      3300
     aagtttgcaa ttgttaaaga aatattatta tgaaggatgg ccaaaaagta aaaacaaagt      3360
     tagtcaatta gtgaaaccat attggaatgt acaagctgaa atacatgtag ttaaggattt      3420
     gttatttaaa ggatcaaaat taatagtacc acagtctatg tataaagaaa tgttggataa      3480
     aattcatgaa ggtcaccaag gaataaataa atgtcttaaa ttagctagag attctttata      3540
     ttggccaaac atgtcagttg atattaaaaa tttagtagaa caatgtctta tatgtgcaaa      3600
     atttaaacct gctaaccaaa aagagccatt acaaaatttt gaaattaaca aatatccatg      3660
     gcaacaagtt ggtattgatt taatgtactt tgatggtctt tcttatttaa ttgttacaga      3720
     ttactattct aaatacatag aaatagcttt gttaaataag aatagtacag ccaaaaatgt      3780
     aattacacat ttaaagtcga tttttgcccg tcatggtata cctttgtcat tagtgtctga      3840
     cggtggacct cctttccaat ctttagaatt taaaaatttc ttacatgaat gggacataga      3900
     acatgttgtt actagtccat atcatgcaca gtctaatggt caagctgaaa gttcagttaa      3960
     aattgtcaaa aatatgttga aaaaatgtaa agaaaattcg tctgatcctt atatagcttt      4020
     gttgcaatat agaaacacac ctaagaataa tttaccgtcc ccagctcaac tcttaatgtc      4080
     taggaattta agagacaatg tccctaagtc gtataagaaa ttaaaaccaa aggtagtaac      4140
     atttaaagat tacaaagaat gtgtaactaa gaataatgat tgtaagtcta aatattataa      4200
     tagaagtgct aagcctttac cattgttata tcccaatgat catgtctact tcaaaagaca      4260
     acctagttgt aattgggaac aggctattgt caagcaaagg ctggcaaata ataggtcata      4320
     tgtcgttgag gatgtcaatg gagttaggta taggagaaat aggattcact taaggcataa      4380
     gttctctcct atgctatcca actcatcgtc gtcgtcgtct ttgtcatcgc aagggagaga      4440
     ggatggtgac agtcagaagg ctggacctca agaactctca tctcgatcct caagtagtca      4500
     atttgttaca cgttcaggtc gtattgtaaa gcccacaaga aggctaatag aagaaataga      4560
     ttaagataag aaatatattt tgtaatctta tatgttgtaa attaagtacc tagtcaagtt      4620
     atataagtat aagtcgttta taatattgtc aagttgtcat agtgataagt ctgttttgta      4680
     aagggttaat ttaaacttaa caaggggga                                        4709
//
ID   Gypsy-4_SpEx-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-194
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4133-4133 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.1% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 194 BP; 56 A; 33 C; 42 G; 63 T; 0 other;
     tgttgtattg tctgtgatta gtattactaa tcagtgttgc actattattg tctatgtcgt        60
     catatcacta taaagagggt ggccgagcaa gtgtcggcca ttgacaatgt aactctggtg       120
     cagtgagctg caggactgtg taacgtataa ataaagtcaa gtatccaaga tccaagtctt       180
     tcaatcatat taca                                                         194
//
ID   Gypsy-4_SpFr-I repbase;    DNA;    INV; 4013 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4013
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1837-1837 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..865
FT                 /product="Gypsy-4_SpFr-I_1p"
FT                 /translation="MAENKGNTTQDGGLPAAESFRVGVRVPPFNPEKPGLW
FT                 FHQMEAQFVLANIKSDETKFFYVIGHLDPQYADDVEDIIAHPPATDKYTKL
FT                 KSELIKRLSASREKKVMQLLRHEELGDRKPSQFYRHLLNLAGPGVPEEFLR
FT                 TIWTSRLPASTQAIVASQSKRDLAELAELADRIHDVVGIQVGSTAAITTAA
FT                 TSPGHAGNSAQSEIAALTKQVAMLAERVERLSRPRGRSGSRTRQRSRSGNR
FT                 SASSYKTSPLCWYHKNFGERARKCIKPCDYPTSGNVRGNQ"
FT   CDS           763..3990
FT                 /product="Gypsy-4_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="NVPALLVPQKLWGTREEMHKAVRLPYFGKCAGQSVMA
FT                 ADDCPSAGRLFVTDQRSKVQFLVDTGSDLCVYPRSALSRRVQKTNFQLCAA
FT                 NGTPIHTYGYINVSLNLGLRRDFVWRFIVADVTKAIIGVDFLCFYNLAVDC
FT                 RNQRLIDNYTTLSTPASSARRSDDVSSVKVSLGESAYTHILREFPDVTRPS
FT                 GIHRTPKHQTVHHIRTTPGPPVACSPRRLAPDKLKIAREEFDAMIKCGTCR
FT                 PSESPWSSPLHLAPKKNDGWRPCGDYRMLNARTIADQYPIRHIHDFAHSLS
FT                 GCTVFSQIDLVKAYNQIPVHPDDIPKTAITTPFGLFEFPYMTFGLRNAAQT
FT                 FQRFVDEMLRGLDFTYAYLDDFLVFSKDHKTHEVHLRQLFTRLKEYGMVIN
FT                 SSKCAFGVSEVNFLGYHISAQGTKPLPSKVEAVQNFPAPKTVRELRRFLGM
FT                 LNFYRRFIPEAATHQAPLNALLTGSVKGSHPVHFTPTEHTAFQNCKNSLCQ
FT                 AALLAHPDCNAKMALVTDASDKAIGAVLQQLNEGAWEPLAFFSRKLTPAQV
FT                 KYSPYDRELLAIYESVKYFRHMLEARHFVIYTDHKPITYAYHSRKENSSPR
FT                 QSRHLDFIAQFTTDIRHISGKNNVVADTLSRVEEITQPVHAERIAAAQLED
FT                 PELKELLAGETSLRLQQVRIPGSTCQLYCDVSTSTPRPFVPKELRRSVFTS
FT                 LHSLSHPGSKASARLVADRYVWPGVRKDCREWVRSCLECQRAKITRHVSAP
FT                 IGNFKLPSSRFAFIHIDLVGPLPLCQGYRYCLTAVDRFTRWPEAIPIADIT
FT                 AETVAKALLSGWIARFGCPSDIVTDRGRQFESELFKCLSGIAGFRHRKTTA
FT                 YHPACNGLVERFHRQLKAAITCHASVSWVESLPLVLLGVRSAYKEDAQASV
FT                 AELVYGQPLRLPGEFFDPQTDETVDTADYLSRLRSLVRQLRPSPAARHNKN
FT                 KFFIFKNLPTSSHVFLRDCTAGGFKPAYSGPHKVIERGDKVYKIVVHGKEV
FT                 TVSIDRLKPAFILRDPDTPYTPPTTITHHNNNTHHDTTNTDNRNLPDPDGG
FT                 VVKATRSGRRVKFPDYYRP"
XX
SQ   Sequence 4013 BP; 1014 A; 1144 C; 966 G; 889 T; 0 other;
     ttggtgaccc cgaacgagca cgatggcgga gaacaaagga aacacgacgc aagatggcgg        60
     cctaccagca gcggaaagtt ttcgcgtcgg agtacgcgta ccacctttca accccgagaa       120
     gcctggtcta tggtttcacc agatggaagc ccagttcgtc ctggctaaca tcaagtcaga       180
     cgaaactaag ttcttctacg tgatcggcca cctagaccca cagtacgcag acgacgtaga       240
     ggatatcatc gcccaccctc cagcgaccga caaatatacg aagctcaaaa gtgagctcat       300
     caagagactt tcggcgtcgc gggagaagaa agtcatgcag cttctcaggc acgaggagct       360
     aggcgacagg aagccgtcgc aattctaccg gcacctcctc aacctggctg gcccaggtgt       420
     tccagaggag ttcctgagga ccatctggac gagccgtcta cccgcaagta ctcaagccat       480
     tgtggcgtca cagtcgaaga gggatctggc tgagctggct gagttggcgg accggatcca       540
     tgatgtcgtc ggcatccagg tgggatctac ggcagccatc accacagctg caacctctcc       600
     aggccatgca ggtaacagcg cgcaatccga gattgctgcg ctgacaaagc aagtggcaat       660
     gttggcggaa cgagtggaac gattgtcccg gccaaggggt agatccggca gtcgtacgcg       720
     tcaacgttcc aggtcaggca acagatcggc gtccagctat aaaacgtccc cgctctgctg       780
     gtaccacaaa aactttgggg aacgcgcgag gaaatgcata aagccgtgcg actaccctac       840
     ttcgggaaat gtgcggggca atcagtgatg gcggccgatg attgtccaag tgcgggtcgc       900
     ttattcgtca ccgatcaaag gtcaaaggtg cagtttttgg tcgacactgg cagcgacctc       960
     tgtgtctacc cccgatcggc actttctcga cgagtacaga agaccaattt ccagttatgt      1020
     gccgctaacg gaacgccgat acacacatac ggctatatta acgtatcact caatttaggc      1080
     ttgcgccgtg actttgtctg gcgatttatt gttgctgacg taacaaaggc gataataggc      1140
     gtggattttt tatgttttta taatttagct gtcgattgca ggaaccaacg cctcatcgac      1200
     aactatacaa cgctctccac cccggcttcg tctgcgcgtc gctctgatga cgtctcgtcg      1260
     gttaaagtaa gtcttggtga gtccgcatac acgcacatac tacgggaatt tcccgacgtc      1320
     actcgtccat caggcataca ccgcacaccc aaacaccaga cagtacatca catccgcact      1380
     actcctggac caccagtagc ctgttcaccc cgcagactgg cccccgacaa actgaaaatc      1440
     gccagggagg agtttgacgc catgatcaag tgtggcactt gtcgtccgtc agaatcaccc      1500
     tggtcttcac ctctacatct ggctccgaag aagaacgacg gttggcgccc ctgcggcgat      1560
     tataggatgc tgaacgcacg gaccatcgca gaccagtacc ctatccgaca catccacgac      1620
     ttcgcccaca gcctgtctgg ctgtaccgtc ttttcacaga ttgacctggt gaaagcgtac      1680
     aaccagattc cagtccatcc agacgacatc ccgaagactg cgatcaccac gccgttcggt      1740
     cttttcgaat ttccatacat gacgttcgga cttcgaaatg ccgcacagac gtttcagcgc      1800
     ttcgtggatg aaatgctcag ggggctggac ttcacgtacg catacctgga cgacttcctg      1860
     gtcttctcta aagaccataa gacccacgaa gtccacctgc gtcagctttt caccaggctc      1920
     aaggaatacg gtatggtcat caacagctca aagtgtgcct ttggtgtttc agaggtaaac      1980
     tttctggggt atcatatttc agcccagggt accaagcccc tgccttcaaa agtcgaagcc      2040
     gtacaaaact ttcccgctcc taagaccgta agagagctac ggagattcct tgggatgctc      2100
     aatttttatc gcagattcat tcctgaggca gccacgcatc aagcacccct gaacgctctt      2160
     cttactggct cagtcaaggg ttcacaccct gtacatttta cacccacaga acatacagct      2220
     tttcagaact gcaagaacag cctatgtcaa gcagcattac tggcccatcc tgattgcaac      2280
     gcaaagatgg cgttggtcac ggatgcgtca gacaaagcca tcggagcagt cctgcagcag      2340
     ctgaacgagg gagcatggga gccactcgca ttcttctcac gcaagttgac tccagcacag      2400
     gtaaagtact ctccttacga tcgagagttg ctcgccattt acgagagtgt caagtacttt      2460
     agacatatgt tagaggctcg tcatttcgtc atttacactg accacaagcc tatcacatat      2520
     gcctaccact ctcgtaaaga aaacagttct ccccggcaat cacgtcacct ggactttatt      2580
     gcccagttca caaccgacat tcgacacatt tcagggaaga acaatgtcgt ggcggacacc      2640
     ctttcacgcg tggaggagat tactcaacct gtgcacgccg agaggatcgc cgctgctcaa      2700
     cttgaggacc ctgaactgaa ggaactccta gctggtgaga cttccttacg cctgcagcaa      2760
     gttaggatcc caggttcaac ttgccaacta tactgcgacg tcagcacctc aacgccgaga      2820
     ccttttgtgc ccaaggaatt gcgcaggtca gtctttacaa gcctgcactc cttgagtcac      2880
     ccaggttcca aggcatctgc aaggctggtc gcagaccggt acgtttggcc tggagttagg      2940
     aaggactgtc gcgagtgggt tcgttcctgc ttggaatgtc aacgtgcgaa aatcacacgt      3000
     cacgtctctg ctccaatagg caacttcaaa ctaccttcat caaggtttgc cttcatccac      3060
     attgacctcg taggtccatt gcctctgtgt caaggatacc gatattgtct caccgccgtc      3120
     gatcgcttta cgcgatggcc tgaggcaata ccgatagcag acataactgc tgaaacagtg      3180
     gcaaaggctc tactgagtgg gtggatagcc cgtttcggct gcccatccga tatcgtaacc      3240
     gatagaggta ggcagttcga atcagagctc tttaaatgtt tgtctggtat tgctgggttc      3300
     cgacaccgca aaaccacagc ctaccatcca gcctgtaacg gattggtgga gagattccac      3360
     cgtcaactca aggctgctat aacctgccac gccagtgtca gttgggtgga atctcttcca      3420
     ctagtcttac taggcgttcg cagcgcttat aaagaagacg cacaagcctc tgtcgccgaa      3480
     ctagtctacg gtcaaccact gcgccttcca ggtgaatttt ttgacccgca gacggatgag      3540
     actgtcgaca cagcagacta tttgtccagg ctcagaagtt tggttaggca actgcgacca      3600
     tcaccagctg ccaggcacaa caaaaacaag ttttttatat tcaaaaattt acctacctca      3660
     tcacacgttt tcctcaggga ctgcactgct ggtggtttca aaccggcata ctctggccct      3720
     cacaaggtaa tcgagcgagg ggacaaggtc tacaagattg tggtacacgg gaaagaggtt      3780
     actgtatcga tagaccgcct taagccggcc ttcatactac gtgacccaga cacaccatac      3840
     acaccaccta ccacaataac ccatcacaac aacaacactc atcacgacac tacaaacacg      3900
     gataaccgga acttacccga ccctgacggt ggcgtcgtca aagcgacgcg gtcaggccgc      3960
     cgtgttaaat ttcccgacta ttatcgccct tgacgggctc tggagggggg tga             4013
//
ID   Gypsy-4_SpFr-LTR repbase;    DNA;    INV; 676 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-676
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1862-1862 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 676 BP; 195 A; 161 C; 132 G; 186 T; 2 other;
     tgtagtgacc cactacatat tttatgtttg tagcgtacat tattaaagtt atttgtaatt        60
     atataaattt gtagaagaaa taaactgtac ctcaaatata aacaatatgt taacattata       120
     tacaatcaat attattatta tatagaatca aaactatgta caataaaatt gtcaaattaa       180
     atatttacat acaagcagac acggacaaac ttttcwtagt taatagttat cggcgagcgc       240
     cacagcgcca gtgcacgcgc accccgcgtg ctgtggtgcg agcgagaccg cgcagtcgcg       300
     ccggagcgcg cgatgtgcga acgagacagc acgagtgcac cggaccacgc gcggcccgcg       360
     tgatgcgcac cggggcatga gcaacccgcg cgccgcgccg gacgacgact cagtctgctt       420
     gacgcctctg cctagacwac tagctagctt tgccttatat aaactcgccg cgctttaata       480
     attatatgca tttaattcag tgctttctat cgctttatct atttgttctc gcctgtataa       540
     taattcactc cttctaagaa ctgtactggt agtgtgtcga acgcctaagt ctgtataaga       600
     caataaacgt ataatactgc taccgtgtgg gacttttact gtatccaaac ctgcaagtca       660
     tcctccacta cctaca                                                       676
//
ID   Gypsy-4_TCa-I repbase;    DNA;    INV; 4707 BP.
XX
AC   ChLG6;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_TCa_;
KW   Gypsy-4_TCa-LTR; Gypsy-4_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4707
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG6; Positions 4067553 4062847.
XX
CC   Positions [1718-2221] - Reverse transcriptase
CC   Positions [3296-3781] - Integrase core
CC   'AGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(77..1105,1109..4138)
FT                 /product="Gypsy-4_TCa-I_1p"
FT                 /translation="MAEENNLPEDISNLEDENVTEEEQQDNHPPAPKRAKV
FT                 VWQETLIALVAAQQKQLSEMTEITRHSKIATGPTPSTSATGEGSAQALANT
FT                 SFRLSEFNPENSDYAIEEWLDIATKLKAELHIGDVLMIAKAGEALKGSAHR
FT                 YYCDWRPVHRTWDEFCKDLIVAFPDRETPGARAFTAATLRSRDCESLSDYG
FT                 IRKLRSINRFHRDLPWNTILSMVEYGLDHGEAQATIRMHQPTGDRELLKIL
FT                 SEFDARRRKQRVMQNQSSRSTDVSSMPRRREKFVKGSCFRCGQSGHHKNNC
FT                 NVDIDKDTGTKVAVETKDSPPTCTHCKKMGHTEPNCWLKHGRPKKAFVVKK
FT                 RHLNTTPMASLLTKNNKFRFVYLIDSGADVSIIKHSVVKALDARIRNTSES
FT                 CAFAGVGTQTVYAVGVSELIIFLPKVTLEVAFLVVPDSAIPGNIDVIIGWD
FT                 VISRPCLRIEKTSEGLELHHDHRNLPKVLTTHCLKINRSGLTDDINQRLET
FT                 MLETYRNNTPDHITTGKMQIRLKDTAPVAYHPRRLAYEERRQVKQIVSKLL
FT                 QDGIIRESHSDYASPIVLVKKKNGELRMCVDYRDVNKRVFKERYPLPHIQD
FT                 QINSLCYAKFFTTLDMKSGFYQMEIEEESKHITAFITPDGHYEFNRMPFGY
FT                 VNAPSIYQRAIDKALGDLKGSKAFVYLDDVLVPSTTIEEGLDTLQEVLCAL
FT                 TAGGFSLNYEKCVFFATETEYLGVVLSEGTIKPSPRKVKALTETPVPSNIK
FT                 SVRQFMGLAGYFRRFIQGFSKITAPITALLRKDQVFNWTPECESARQLIIS
FT                 KLTEPPILRIYNPELPCQLHTDASSVGIGAALLQVENGAAYPVAYYSRRTT
FT                 DYESRYPAYDLETLAIVEAVEHFRVYLYGVHFTVFTDCNSVRATALKKNLH
FT                 RRVAHWWMKLQDFDFSIEYRPGKQMAHVDYLSRNPVDEESDLKVCVLKTIS
FT                 ANKISDVQTLREFQNNDSFCREILNDPDCSQDFTVINNVVVTKTKPQKCFV
FT                 PIAARLLAMKLYHDYSSHIGWDKCIQKMREDLFWPKMGQCLKKYIKNCRSC
FT                 VLGKSHTGPRSGLWQHGEQPSDILETWHIDHAGPIMKSNGCTQILVIIDAF
FT                 SKYCRLQPIPKKTSEDSICALLAVFEELGRPKRIIADRGTAFTSTMFQNFL
FT                 SEQGVKLHHIATGIPRGNGKVERLMRTVFNLLRATLTAKKENTWTVAIAAI
FT                 EDNLNSTVHSATGYVPAVLQLGINPRLVATQQFLGDAPTSDHFVDPDKAVA
FT                 DARVRMQENTKKHAQRFDATRFRSSLFLEGDKVAVEDSQLAGGGKLKAKYK
FT                 GPYTVSKRLPNERYLLTKKGQRTTVAAHEQLRSWPSTETSD"
XX
SQ   Sequence 4707 BP; 1471 A; 964 C; 1072 G; 1200 T; 0 other;
     tcagaagtgg gattcgaaaa tcctaccgcg aagttcccac tagtgtctgt tgtgaaatag        60
     tttaagacaa aggacaatgg cggaggaaaa caatcttcct gaagacatct cgaatcttga       120
     agacgagaat gtgacagaag aagaacaaca agacaatcat ccccccgccc caaaacgagc       180
     caaggttgtg tggcaggaaa cgctaattgc gcttgtagct gctcaacaaa aacagttatc       240
     tgagatgacc gaaataacac gtcattccaa gattgcaact gggccaacgc ctagcacgtc       300
     agcaaccgga gaaggttctg cgcaagcttt agcaaacaca tctttccgct tgtcggaatt       360
     taatcccgaa aatagcgatt acgcaatcga ggaatggttg gacatcgcaa ctaaacttaa       420
     ggcagaatta catattgggg atgtcctcat gattgccaaa gcgggcgaag ctcttaaggg       480
     gagtgcccat cgatactatt gtgactggag accagtacat cgcacctggg atgaattttg       540
     caaagacctt atagttgcgt tcccagatcg cgaaacacca ggtgcccgag catttactgc       600
     tgctactctc cgcagtcgcg attgtgagtc acttagcgac tacggaatcc gaaagcttcg       660
     atccatcaat cgattccatc gcgacttgcc ttggaacacc atccttagta tggtagagta       720
     tggcttggac cacggagaag ctcaggctac catccgcatg catcaaccca ctggtgatcg       780
     ggagctcctg aagatcttga gcgagtttga tgctcgccgc aggaaacagc gagtcatgca       840
     aaaccagagt tctcggtcga ctgatgtgtc tagtatgccg cgacgtcgtg aaaaatttgt       900
     gaaaggatct tgctttagat gtggtcaaag tggacaccat aaaaacaatt gtaatgtgga       960
     cattgacaaa gatactggta ctaaggtggc agtagagaca aaagatagcc caccaacgtg      1020
     tacccactgt aagaagatgg gacacacgga gccaaattgt tggttgaaac acggcaggcc      1080
     gaagaaagcg tttgtggtga aaaagtgacg ccacttaaat acaacgccaa tggcttcgtt      1140
     gttaacgaaa aacaataagt ttaggttcgt ttacttaatt gatagtggtg ctgacgtttc      1200
     catcataaaa cattctgtag ttaaagcgtt ggacgctcga attcgtaaca ctagcgaatc      1260
     gtgtgctttc gctggtgttg gaactcaaac cgtatacgct gtgggtgttt ccgaactaat      1320
     tatctttttg ccaaaagtga ctctcgaagt agcctttttg gttgtgcccg attccgcaat      1380
     tcctggtaat attgacgtga ttattggctg ggatgtgata agtcgacctt gcttacgcat      1440
     cgagaaaaca agcgagggtc tcgagttaca ccatgaccat cgcaatcttc cgaaagtatt      1500
     aacaacgcat tgcctaaaaa taaaccgaag tggtctcacc gatgacatca accaacgatt      1560
     agaaacaatg ttggaaactt atcgaaataa tacaccggat catattacta ccgggaaaat      1620
     gcagattcgt ttgaaagaca ctgctccagt agcgtaccat ccaaggcgtt tagcttacga      1680
     ggagaggcgt caagtgaaac aaatagttag taagcttttg caagacggta ttattcgtga      1740
     aagtcactcg gactatgcta gcccgatcgt acttgtgaaa aagaaaaatg gtgaattaag      1800
     aatgtgtgtg gattaccggg atgttaataa acgcgtcttt aaggaacgat accctttgcc      1860
     acacattcaa gatcaaatta actctttgtg ctatgccaaa tttttcacaa cactagatat      1920
     gaaatctggt ttctaccaaa tggaaattga ggaagagtca aaacatatca cagcgttcat      1980
     cacgcctgat ggccattatg aatttaatcg aatgcctttc ggctacgtga atgctccttc      2040
     gatttatcaa cgagccatag acaaggctct aggagattta aaaggcagca aagcttttgt      2100
     ttacctcgat gatgttttag ttccatccac gacaatagaa gaaggactag acactctaca      2160
     agaagtgctt tgtgcgttga ctgctggtgg tttctccctg aactatgaaa aatgtgtgtt      2220
     tttcgctact gagactgaat atttaggtgt tgttttgagt gaaggtacca ttaaacccag      2280
     tccgcgaaaa gttaaagctt tgactgaaac acccgttcca tcaaacatta aaagtgtacg      2340
     tcagtttatg ggacttgccg gatattttcg ccgctttatc caaggatttt cgaagataac      2400
     tgctcccata acagcattgt tgcgtaaaga ccaagtgttc aactggacgc cagagtgtga      2460
     aagtgctaga caactaatca tcagcaaatt aactgaacct ccaattttgc gaatttataa      2520
     tcctgagtta ccgtgtcagt tacataccga cgctagttct gttggaattg gagcagcgct      2580
     tcttcaagtt gaaaatggtg cggcttatcc agtggcgtac tatagtcgtc gtacaactga      2640
     ttatgagtcc agataccccg catatgattt ggaaacactg gctatcgtcg aagcggtaga      2700
     acatttccga gtttatttgt acggtgtgca tttcacagtg tttacagact gtaattcggt      2760
     gcgagcaacc gctttgaaaa agaatcttca tcgtcgtgta gcccactggt ggatgaagtt      2820
     acaagatttt gatttttcaa tcgagtatcg acccggtaaa caaatggccc acgtagacta      2880
     tttaagccga aatcccgtcg acgaagaaag tgacttaaaa gtgtgtgtgt tgaaaacgat      2940
     aagcgcaaat aaaatatcag atgtccaaac attacgggaa ttccaaaaca atgattcgtt      3000
     ttgccgcgaa atactgaatg acccggattg tagtcaagac ttcactgtaa taaacaatgt      3060
     agttgtgaca aaaacaaaac ctcagaagtg ctttgtacct attgctgctc gtttattggc      3120
     gatgaaattg tatcacgatt attcgtcaca cattggctgg gacaaatgca tacagaagat      3180
     gagagaagat ttattctggc caaagatggg acaatgtcta aaaaaataca tcaaaaactg      3240
     cagatcatgt gtccttggta aatcacatac tggtcctcgt tcagggttat ggcaacatgg      3300
     agagcaaccc agtgacatct tggagacctg gcatatcgat cacgctggac ctattatgaa      3360
     atccaacggc tgtacacaaa ttcttgtaat aattgatgcc ttttcgaaat attgccggct      3420
     gcaaccgata cccaagaaaa cttccgaaga ctctatatgt gcattattag cagtgtttga      3480
     agaattggga aggccaaaac gcatcattgc ggatcgagga actgctttca catcaacgat      3540
     gttccaaaat tttttgagtg aacaaggtgt aaaactgcat cacattgcta ctggtattcc      3600
     aagaggaaac gggaaagttg aacgtcttat gcgaactgtt ttcaaccttc tgcgagcaac      3660
     attaactgcc aaaaaagaaa atacctggac cgttgcaata gcggcaattg aagacaattt      3720
     aaattctact gttcattctg caactggtta cgtacccgca gtactacaat tgggaataaa      3780
     tccgagattg gtcgcaactc aacaattttt gggagacgcg ccgacaagcg atcatttcgt      3840
     cgaccctgac aaggccgtcg ccgatgcacg tgtccgtatg caggaaaaca cgaaaaagca      3900
     cgctcagcga ttcgatgcga ctcgatttcg ttcaagttta tttttggaag gagataaggt      3960
     agccgttgaa gattctcaac tagctggtgg tggaaagtta aaagcgaagt acaaaggccc      4020
     ttatactgtg tcaaaacgac ttccgaacga gagatatctg ttaacgaaaa agggacagag      4080
     gaccactgta gctgcacacg aacagttgag atcttggccc tcaacggaga cttctgatta      4140
     agttactaag taagtaaagt aaacaaaacg gatcgaatgc aaataaagtt gattacaaac      4200
     aataaaaagt gaatggctat atcactcaaa gtgcaattaa tcggctagtg gcagtcctac      4260
     taggcctgga aggtggcagt accacctgat gtgtgtaaat gtgaagagtg gcagtaccac      4320
     tggcaaatta gggtggcagc accacctggt atgtctggta tgtactggta tgtacagagt      4380
     agtggcagaa ccactaggta aaaagggaag gatggcagta ccacctgatg acaacagtcc      4440
     aagtgagttg gttagtggca gtcccactta ccgtacaaaa aaaaaaaaaa caaacacatt      4500
     agtggcgatc ccacaaattg taacagaaat aaagttgtga cattcctttc gtgaaatcag      4560
     agacaaaaca gagtaagtct gatagtcctg aacaaggata tcaaagacaa atcaaagtag      4620
     tgaagacagg agtactgtct tgtgatttct gttttcagaa tttcccttga gttgcgttgc      4680
     gaggacgcaa caggaacagg atggccg                                          4707
//
ID   Gypsy-4_TCa-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   ChLG6;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_TCa_;
KW   Gypsy-4_TCa-I; Gypsy-4_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG6; Positions 4062846 4062642.
XX
SQ   Sequence 205 BP; 55 A; 49 C; 49 G; 52 T; 0 other;
     tgttagcgga atataggcag ttcctatggc aatacccagg cgtacccgac gcaggcgcct        60
     gcgaaggcgt cgaatagtac gaatacgcag tagtcgcata gtacgcagtt caaatctgta       120
     tcaaataaag tggtgttttc cgaatagtgt ctttctggcg gtaaaaaccc cattcactct       180
     tgtttacccc attgggacgc taaca                                             205
//
ID   Gypsy-4_TrNi-I repbase;    DNA;    INV; 4678 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-4678
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 200-200 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. The consensus is ~93% identical to
CC   that of Gypsy-32_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..4613
FT                 /product="Gypsy-4_TrNi-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MPPRKVRTDPGDLDAQASSDEEPGRSSSVLMSGDQLT
FT                 SFLTAFANTQAEANRQLVESLMASHAARGYTATPSPTPSSSTSKSGNMSKC
FT                 TARFDGQNRDPEMVEAFIDSVEMYKECALVTDDLALRGLPMLLHGEAAVWW
FT                 RGIRTEVSSWSEAVKRLRSMYGTPCPAHKLYRKIFANEQNEELADSFIVRL
FT                 RGMITKLPYVLPEEAKLDIIYGLLHKRIRKRLPRDTVNTIESLIDKARDIE
FT                 ESITEHSNASTSSQSAPTETTQPPARCAQAGPRPPRAAAPCINSAGNGAMT
FT                 PTLSGALAQQSISRSQVRSVRNMCNELQSADNNNTASVSKLFCVYCKGRGH
FT                 TRESCPKKDSKVSSSNNKSSLICYGCGEKGFVRANCPTCKSNVSSLSCNVI
FT                 NSNEPQLQHNVFYSLTTAEDCINVNTSTNSIIMQDRPILNIEILGYSGSAL
FT                 IDTAARRSIAGSTLYRLLLRLGVKFKSQMMSIRLADGSIRTNIVLLACVNV
FT                 SCMSLCIPIEFVVFPDASNNETLLGIDYITKSKLVLNFSSMTWYTADRPQV
FT                 IHPLLTESSREAVVECASLSLLRGDEGTLLTEEERGGLENLLGEYSDIFDK
FT                 NGEPTPFAEHHIDTGDHPPIAVPPYRVTPAKKELIRMELDKMLEDGIIEEC
FT                 ESAWSAPIVLVPKSNGGYRFCVDYRRLNAVTKTDAYPMPRIEELLQSTKKG
FT                 CVMSSCDLRSGYWQCRVKDQDKTAFVTPFGTYRFLRMPFGLKNAPATFQRL
FT                 IDRFRSGSSLKDVIVLTYLDDILVISDSYARHLLDLRAVFDRLRLFKLRAN
FT                 RDKCVFAREKVKYLGHVISPEGISPDEEKVLAVVGMKEPICLQQLRTFLQT
FT                 CSWFRKFIPDFAKVAEPLTRLTKKSQAWVWSTEQGKAFETLKKLLTTAPIL
FT                 VQADYTKPFVLRTDASNYALGAALLQGESPNQEHPIEYASRLLTPAEQNYS
FT                 TTEREALAVVWAVERFRGYIDGHQINVMTDHQPLKWLFTLKSPSGRLVRWA
FT                 LKLQSFDLRIEYTPGKVNVLADTLSRPVTDDGPATESAVCPVVVDVPRWNA
FT                 SSTRDAQLADPEVAKIIHDLEGNDELNINRWSERGYLLNQGVLYRYVPDTD
FT                 SEEPQLVVPESLRNQVMFECHDSPTAAHGGIDRTIHRISQRFYFPGMRCFV
FT                 TKYLKTCIECQRYKPSTLKPAGLLQTPVPSQRFETIAVDLFGPLPKGLQGE
FT                 RWILIVEDTTSKWVEVFALIEATAETCAKTLVNEVFMRFGLPRRMISDNGV
FT                 QFVADVMQKAMYVLGVKQSLVPLYHPQANPVERKNRDLKAQLAILVEGRHQ
FT                 TWPEVLPFVRFAFNSSVTTSTDRTPAYLTFGRELRSPLTAQADLRVVVESE
FT                 NFVPQITPYLLKLADTVSTAKETLERQQDVRKSYADKCRSSAHDYQEGDLV
FT                 LMRTHTLSNASKGVTSKFNPKRDGPYVVSKKVSPTTFLLAHDKTGEIIGKY
FT                 HVSDLRPYHAREGECPEPIIPKRNRGRPRKVT"
XX
SQ   Sequence 4678 BP; 1193 A; 1086 C; 1171 G; 1228 T; 0 other;
     agtggcgctc caactcgtgg ccgcgaacca gtttaaacca gtttgtgctt gtcgaccggt        60
     aacgattttt cggtgttaag ttcctgtgtt cctgttctct ggtacctacg ttaagagtga       120
     agatgcctcc acgtaaagta cgaactgacc caggtgacct tgacgcgcag gccagctcgg       180
     atgaagaacc tggaagatct tcgtcagtgc tcatgtctgg ggaccagctg acttcatttc       240
     tgaccgcctt cgcgaacact caggcggaag caaatcggca gctcgtcgaa tccctcatgg       300
     catcgcacgc ggcgcgtggt tataccgcga cgccctcacc gacaccgtcg tcgtcaacta       360
     gtaaatcagg caacatgtcc aagtgtacgg cacgttttga tggtcaaaac cgagaccctg       420
     aaatggtaga agccttcatt gactccgtcg aaatgtataa ggagtgtgca ttggttaccg       480
     atgaccttgc gcttcgtggt ctcccgatgc tgctacacgg cgaggctgca gtatggtgga       540
     gagggatccg gacggaggtg tcctcgtggt ccgaagccgt caaacgacta cgtagtatgt       600
     acggtactcc gtgtcctgct cataagctgt atcgaaagat attcgcaaac gaacaaaatg       660
     aagaactcgc ggactccttc attgtacgtt tacgaggtat gatcactaag ttaccttacg       720
     tattacccga agaagctaag ttagatatta tatacggatt attacataaa cgtattcgaa       780
     agcgattacc ccgggacacg gttaacacta ttgagtcgct aatcgacaaa gcccgagata       840
     tagaagaatc tatcacggaa cattccaacg caagtacttc ctcgcagtcg gcgccaacgg       900
     agacgacgca gccgcccgcg cgctgcgcgc aggccggccc gcggccgccg cgcgctgctg       960
     ctccgtgcat caattcggcg ggaaacggtg caatgacccc gacgctcagt ggtgcgttag      1020
     cgcagcagtc gatctcgcgt tcgcaggttc gatccgtacg taatatgtgc aacgaattgc      1080
     aaagtgccga taataataat accgcgagtg tatcaaagtt gttttgtgtg tattgtaaag      1140
     gtcgaggtca tacgcgtgaa tcgtgtccaa agaaagactc taaagtatcg tctagtaata      1200
     ataaatctag ccttatttgt tatggttgtg gtgaaaaagg gtttgttcga gcaaactgtc      1260
     ctacttgtaa aagtaatgta tcgagtttga gttgtaatgt tattaattca aatgaaccac      1320
     aacttcaaca taatgtattt tattcactta ccacggcaga agactgtatt aatgtaaata      1380
     caagcacgaa tagtatcatt atgcaagacc gacctatatt aaatattgag atattaggtt      1440
     atagtggttc agcgcttata gatactgccg cccggcgtag tatcgcgggt tcaaccctat      1500
     atagactact tctacgttta ggtgtcaaat ttaagtctca gatgatgtcg attagacttg      1560
     cggatggtag tattcgtacg aatatcgtat tgttagcatg tgttaatgta agttgtatgt      1620
     ctctgtgtat tcccattgag tttgtggttt ttcccgatgc ctcaaataac gaaacgctat      1680
     tagggataga ttacattaca aagtctaagt tggtgttgaa tttttcctct atgacatggt      1740
     atacagctga tcggcctcag gtcattcacc ccctactgac ggagagttct cgcgaggcgg      1800
     tggtggagtg tgcttctctc agcctactga ggggagatga gggcactctg ttgactgagg      1860
     aggagcgtgg tggcttggag aatttacttg gtgagtattc cgatattttt gataaaaacg      1920
     gggaaccgac gccatttgcc gaacatcata ttgatacggg cgatcatcct cctattgccg      1980
     tgccaccgta ccgtgttacg ccagcgaaga aggagttaat tcgcatggaa ctagataaaa      2040
     tgttagaaga tggaattatt gaagagtgcg agtctgcatg gtctgcaccg attgttttgg      2100
     tgcctaagtc caatggtggg tacaggtttt gtgttgatta tagacgcctc aacgctgtta      2160
     cgaaaacaga tgcgtatcct atgccgcgta ttgaagagtt gctccagtct actaagaaag      2220
     gttgcgtgat gagttcctgt gaccttcgga gtggctattg gcaatgcaga gtaaaggatc      2280
     aggataaaac cgcgtttgtc acgccgtttg gtacgtatcg gttcttacga atgccttttg      2340
     gtctgaagaa cgcgccggct acgttccaga ggcttataga tcgcttccgt tcaggatcat      2400
     cactcaaaga tgtcatcgta ctgacgtacc ttgatgatat attggtgata tctgactcat      2460
     atgctcgtca tttgctagat ctccgtgcgg tatttgaccg tctccgctta tttaagctcc      2520
     gtgcgaatcg ggacaagtgt gtcttcgcca gagagaaggt taagtacctc ggtcacgtga      2580
     tctcacctga aggtatatcc ccggatgagg agaaggtgct tgctgtggta ggtatgaaag      2640
     agcctatttg ccttcaacag ctgcgcacct tcctccagac gtgttcgtgg tttcgtaagt      2700
     tcataccaga cttcgcgaaa gtggccgaac cacttactcg attaactaag aagtctcagg      2760
     cgtgggtatg gagtacggag caaggtaaag cttttgaaac tcttaagaaa cttctgacca      2820
     cagcacccat tcttgtacaa gcggactata cgaaaccatt cgtattgcgg actgacgcta      2880
     gtaattacgc actaggcgca gccttactcc agggggagtc accaaatcaa gaacatccaa      2940
     ttgaatatgc cagccgtctg ctcactccag ccgagcagaa ttattccacc acggagaggg      3000
     aggctctcgc agtggtgtgg gcagtggaac gtttccgagg ttacatcgat ggtcaccaga      3060
     tcaacgtgat gacagatcac cagcccctaa aatggctttt taccctcaag tctccaagtg      3120
     gcagattagt acgttgggcc ctgaagttgc aatcgttcga cctgcgtatc gagtataccc      3180
     caggtaaggt taacgttctt gccgatacgc tcagccgccc cgtgacagac gatggtcctg      3240
     caaccgaatc ggctgtctgt cctgttgttg ttgacgtacc gcgctggaat gcatcttcca      3300
     cccgtgatgc gcagttagct gatccggaag ttgcgaagat catccatgac ctcgaaggta      3360
     atgatgaact taacataaat cgttggtctg agagaggcta tctcctgaat caaggtgtcc      3420
     tgtatcggta tgtccctgat actgattccg aggagcctca actcgtcgta ccggagagcc      3480
     tgcggaatca agtcatgttc gaatgccatg actcgcctac cgccgctcat ggtgggattg      3540
     atagaacaat acatcgtatc tcgcaaagat tctattttcc tggtatgaga tgttttgtaa      3600
     ccaagtactt gaagacttgc atcgagtgtc aacgctacaa gccatcaact ctcaaaccag      3660
     ccggcttgct tcaaactcct gtcccgtctc aaaggtttga aactatcgca gttgatcttt      3720
     ttggtccgtt gcctaaagga ctccaaggtg agagatggat cctcatcgtg gaggacacca      3780
     ctagcaagtg ggtggaagtc ttcgctctca tcgaagctac agcagagacg tgtgctaaaa      3840
     ctttggtcaa tgaggtattt atgagattcg gtcttcctag gcggatgatt tctgataacg      3900
     gagtgcaatt cgttgcagac gttatgcaaa aagcgatgta tgttctaggt gtgaaacaaa      3960
     gcctggtgcc cttatatcac ccacaggcga atccagtcga gcgaaagaac agggacctaa      4020
     aggctcagct cgccatctta gtggaaggtc gccatcagac ttggccagag gtattaccgt      4080
     ttgtacggtt tgcttttaat agttcagtga ctacatccac ggatcgtacc ccagcttact      4140
     tgacgttcgg tcgtgagctg cggtcaccct taactgctca ggcagatctc cgagtagtgg      4200
     tggaatcgga gaattttgtt ccccaaatta cgccttatct gctgaaactc gcagacaccg      4260
     tctcgacggc caaagagact ctggaacggc agcaagatgt ccgtaagtca tatgccgata      4320
     agtgtcggtc gtcagctcat gattaccagg aaggagactt agtcctaatg cgaacccata      4380
     ctctcagtaa cgcatcaaaa ggtgtcacct cgaaatttaa tccgaaacgg gatggaccgt      4440
     acgtcgtctc taaaaaggtg agtcctacta cattcctcct agctcatgat aagacaggag      4500
     aaatcatcgg caagtatcac gtatcagatt tgcgtcctta ccatgctagg gagggtgaat      4560
     gtcctgagcc gattatccct aaacgtaata gaggtcgccc tcgaaaggtg acctaaccgc      4620
     agcgcttttc ttgtatttga ccactcggag taccttccgc tggtcaaaag ggggagag        4678
//
ID   Gypsy-4_TrNi-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-309
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 249-249 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 309 BP; 64 A; 96 C; 66 G; 83 T; 0 other;
     tgtaacgccc tgcccaaccg tcgtttctat gttaacatag cgcgtacgcg ggaattcttt        60
     ccttcctccc gctcccgtcc cgctcccgcc ccgcgcagga cgacgcgcga tgtcgctcgc       120
     cgctcgcgtg atcgacagtt cgctcccgcc aaccgccgca gcgcgcacga aatcgttgcg       180
     ctcgcgaccg ttactagtta ttaagaatat ttactgtgta tgaacattgt gtgcctgaat       240
     agactatttt taactctaat cttggtttta cttcaatttg cggaacccag aactcaaacg       300
     aatgttata                                                               309
//
ID   Gypsy-4_TrVa-I repbase;    DNA;    INV; 8974 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8974
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 250-250 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1161..2426
FT                 /product="Gypsy-4_TrVa-I_1p"
FT                 /translation="MSAPHENTRNRASRAPSNPARGRGRGFIPHRPNNVLC
FT                 PFPPGLPRGIVPVSPAASRFVGPNFVQGPQSPAQNFVLVGPPSNQGNLNAN
FT                 AHNFVPSNVIPPSFHPESPQVCGFQAQASQPVDTSEFWSLDDGMTETDNRS
FT                 LMGNLLKEMQELKVSVEQQLVKQKEEILSIVVEANCQSPEARPPSRQANPP
FT                 RQSIADSRSTNATQFRDLPVFDGTLNDIHPKDFLRELDLYFSSHNATDRVM
FT                 INDAGKLLRGSAATWFRVYRNTFFNYDTFVARFLDQFWGIRIQNSIRLSLP
FT                 SLNERPPDHGNLEFYFLRKVCFMQYLDDPIPPPLIIDSLVNHFPYDVKSAI
FT                 IQSKAETIEDVQGILRGFDHIGPRPALVPNVRNFQQTQNVKPSDQPKPFKS
FT                 NYKANCLAQEGDGIVSQTSPNSDDPSLN"
FT   CDS           2414..6919
FT                 /product="Gypsy-4_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SFFKLNLCLSSREPEGAQINTYNHCSSQSSSFKFHYL
FT                 LYRVDIMHPSSKNRPLYSLLVMIPKCFSFSHLQCKIDNVTFEFYKLFEITA
FT                 LSNKLTFNILLNLNLQDFNYFLLVLDLGCMSHDISTDIVSHPEISATLENV
FT                 GLLSQYIPTIFVGNHQCQNLEMSGNSKTFFESIQSYLCSNFKKVMFLSAPV
FT                 NESDVLLGSDIDSFQLFKAILTSCYREYIDLSQPANPSNTVYTVSDNFLLA
FT                 ENDEGKFCGDARYKSPYVFGKIQDFQFELMVDSGSEVTFFNEEFYNILVEQ
FT                 CGTFPKLPLTGVTLRGVTGAKSKKVSFQIFVDLNLGDHVFQKSFLVVPGMN
FT                 AKAILGTDFLEFFSARIDYGAKLLSFNNDTVKVPFVYRPSLSVAGCNAVSC
FT                 DHDDPGPSIHVFSDSHGRGLLPVLEKSFHGLDVKINVNFQPGARFNQIIGE
FT                 IQKCKQEIKSNDFVFIIAGTNNIDPSKSKNKLKSEFDFKFLQNLNCNLVLF
FT                 DIFPRHDITGVEEMIKTANLHMRKNLRNSCLFLESKSFLPRKLFNSRGLHL
FT                 NEKGKKVLGNVIMDTVSNFECFNSNQKVSFQIFIADSLEANVDQDVCSDIE
FT                 DKPLTDEEILAKLDQPDLSNDQKQQLFNVIAKHRHIFSNIPGKCNKFIGRF
FT                 RTKDKILFNKRPYPVPESKKEAVRKEIHKMLLLDIIERSSSPFSNPIVPVT
FT                 KPDGSVRLCLDAKSLNKHIISDAESPETIDSLLFKFNNPAFMSTIDCTSSF
FT                 WQVELEPESRELTSFQFEGKNFQFTRVPFGSSVSMQLFIKCTEAVFGPEVD
FT                 SFLSRYIDDFRIVSKTFDEHLQHLDTIFQNISDANMTLKFSKCKFIQSELD
FT                 FLGYIVSKYGIRMDPEKVRAVQDFPVPRNVKDLQSFLGFINFYRKFIFKFS
FT                 YLTVPLSNLLKKDTRFKWTETHQKAFEEIKKVFITEVVLAYPDFRKPFFLN
FT                 TDASYNAVAGELFQLDEDGDRRPICFHSRILTPAERNYTVTELELLAIVSS
FT                 CQKFRQFILGYPVTVLSDHHALTFLDRCTLAHRRITRWALYLQEYNLTVQY
FT                 IKGCDNIVADTLSRYPPEVESLPPNNLEFNVNLCKISSQLSVQLKSLPAEQ
FT                 RRDLRLSQIISNLESNVSFNGCECYFIHNNILFFKSPKNGSVKLCIPQSLE
FT                 ISVIKSAHTTIGHFGGTKTYHYLKEIAIFPKLENKVRNVIKSCLDCQKCKI
FT                 SNKTYFPPLVPVMSNKLLSLVSVDLFGPLPKSKGNFQFVLLALDVYSKFIK
FT                 AYPLRNSTAVLVTRKITQNYLVDVGTPETIISDHGPCFRSDYWGSALKDCG
FT                 IQPRKTSVYHPASNPVERYMRTLGEFLRVHCHENHKSWVDYLIPFEDCVNS
FT                 TYNESTGFTPIEIVKKVKPFNFLSTLVNFPPDSVIQDHNLKLLALEEHQTK
FT                 KAKVRKQRFDENHSLYNFKVGDLVLLRTHHLSNALRAETKKFFALFNGPYK
FT                 IVKEVGKNAFQLQETDSKRSVGVHNAVFLKPFNSPIL"
XX
SQ   Sequence 8974 BP; 2410 A; 1856 C; 1593 G; 3114 T; 1 other;
     aattggcgcc ctccgcggta ccgtctttaa agcggtaacc cacgaaagga aattcgtgat        60
     ttacgtatct ttagtgttaa ttattctctt gtcaataatc ttaatttcga aatctttgtg       120
     aagttcgttt taggccacaa gccgaccggc gtggttacag tgtgtgtagt ccgtgatttc       180
     tccattgtga atcatcttaa atccctttca ttaagtccaa ttatcttccg ttcgagttat       240
     tgggccgatt tggtgctgta atcgtgaatt ttatcaagaa ttgaaattct gaaaatcgtg       300
     atacacgtgc tgtggattca gtgatatccc tccgcatttc ggttcgcttc cctctgttcc       360
     gcgaacgcag tgcacggcca tcgttgttcc tccgccgttc caaccgttcc gaaaccgggt       420
     gaatctcgga atctcgcgag tgacgtcatt caatcgattg atcgatataa tcgatacatc       480
     gcagtttgtt tttgtttact ttttatttac aagtttctaa ccacggctta tcaactactt       540
     acgtgttttt ctcgcttcaa atatcagcgg acaatttatt ttgtttattt taccactttt       600
     gtcggttgaa atgagtatat tattcttgat cccgacaatg ttcttttctt ttcttgatga       660
     agtgatcgga ttatcgctgg attttcctga agtctcgcag cggaaaagtt atttggtctt       720
     ttgaatgttg ttaatttctg ttgttgagtg aattcctgta ggaagacatc agggtgcggt       780
     ttgaaacctt aggagttttc ccgcactcca tcgtgggtgg acaagcggta aatttctcct       840
     ttggatgttt tggctttctg gtttactgga tcgttcctat ttgaaattct gttcctgatt       900
     aattctatct ggtggtcact tatcaacttg tggattgcgg atgttacata cattttctca       960
     cgaaggtctc tcaagtccgt agtggattgc ggtcttaaca ttcactcatg gtttcactcc      1020
     tatggatggt agatactaat tcttcgaatc gtcgatttct tctgtttcag cgttccggga      1080
     tcatctcgcc gtcaggatta ctgtaagact gttccttgtt actgttttct tttctttttt      1140
     taattttgat ttttgttagt atgagtgctc cacacgaaaa taccagaaat cgtgcgagcc      1200
     gtgctccgtc aaatcctgcc agaggtcgtg gcagaggttt cattccccat cgtccgaata      1260
     atgtcttgtg tccttttcct cctggactcc ctagagggat tgtaccagtt tctcctgctg      1320
     ctagtaggtt cgtagggcct aattttgtcc agggtcctca gagtcctgct caaaattttg      1380
     tcctcgtcgg tcctcctagc aaccaaggaa atttaaatgc aaatgcccat aattttgtgc      1440
     cttcaaatgt tattcctcct agttttcacc cggagtcccc acaggtctgc ggttttcagg      1500
     ctcaggcatc ccaacccgtt gatacgtcag agttctggtc tctcgatgat ggtatgactg      1560
     agactgacaa tcgcagtctt atgggaaacc tcctaaaaga aatgcaagag cttaaagtca      1620
     gtgttgaaca acagttagtt aaacaaaaag aggagattct ttccattgtt gttgaggcta      1680
     attgccagtc accggaggca agacccccat caaggcaagc taacccgcct agacaatcta      1740
     ttgcggactc aaggtctaca aatgctaccc aatttaggga tctacctgtt tttgatggca      1800
     ctctaaatga tattcacccg aaagattttc tccgagaatt agatttatat ttctcttcac      1860
     acaatgcaac tgatagggtg atgataaatg atgctgggaa actgttgcgg ggaagtgcgg      1920
     caacctggtt tagagtttac cgtaacacct ttttcaacta tgacactttt gttgcacgtt      1980
     tccttgatca gttttggggc atcagaattc aaaactcaat tcggttgtca ttgccatctt      2040
     tgaatgaaag gcctccagat catggaaact tagaatttta ttttcttcgt aaagtctgct      2100
     ttatgcaata tttagatgac cccattcctc cccctctcat tattgatagt cttgtaaacc      2160
     attttcctta tgatgtcaaa tcggccatta ttcaaagcaa ggctgaaacc attgaagatg      2220
     ttcaaggtat tctaagaggc tttgatcaca ttgggcctcg tccagctctt gttcccaatg      2280
     ttcgcaattt tcagcaaaca caaaatgtta agcctagtga tcaacccaaa ccttttaaat      2340
     caaactacaa ggccaattgt ttggctcaag agggtgatgg cattgtgagt cagacctcac      2400
     cgaatagcga tgatccttct ttaaactaaa tttgtgtctc tcatctcgtg agcctgaagg      2460
     ggcacaaatt aacacttaca accactgcag ctcacaatcg tctagtttta agtttcacta      2520
     tttgctttac agagttgata ttatgcaccc ttcttcaaaa aatagaccgc tgtattcttt      2580
     gttggtcatg attccaaaat gtttttcttt ttcccatcta cagtgtaaaa ttgacaatgt      2640
     gacatttgaa ttttataaac tttttgaaat tacggcactt tcaaacaaat taacgttcaa      2700
     tatcctactt aatttgaacc tccaagattt taattatttt ctgctcgttt tagatttggg      2760
     atgtatgtct catgacatct ctacagatat tgtttcacac cctgaaattt ccgcaactct      2820
     tgaaaatgtg ggattactta gccagtatat tcctactata tttgttggaa atcatcaatg      2880
     tcagaatttg gaaatgtctg gtaattccaa aacatttttt gaatccatac aatcttatct      2940
     gtgttcaaac tttaaaaaag taatgttttt atctgctcct gttaatgaat cagatgttct      3000
     ccttggttct gatattgata gtttccaatt atttaaagcc attctgacgt cttgctacag      3060
     agagtatatt gatttatccc agccagcaaa tcctagtaat actgtgtaca ctgtaagtga      3120
     caatttcttg ttagccgaga acgacgaggg aaagttctgc ggtgacgctc gttataaatc      3180
     tccttacgtt tttggcaaga tccaggattt tcaatttgaa ttaatggttg actctggaag      3240
     tgaggttacc ttcttcaatg aagaatttta caatatttta gtggaacagt gtggaacctt      3300
     tccaaaatta cctctcacag gtgtaaccct gcgtggtgtc actggcgcca agtccaaaaa      3360
     agtgtctttc caaatttttg tggatcttaa tttaggagac cacgtgttcc aaaaatcatt      3420
     cttggtcgtg cctggtatga atgccaaggc tattttagga actgactttc tcgaattttt      3480
     ttcagcccgt attgattatg gtgccaaatt attgtctttt aataatgaca ctgtcaaagt      3540
     tccatttgtt tatcgtcctt ctctttcagt agcaggctgc aatgcagtgt cctgtgatca      3600
     cgatgacccg gggccttcca tccatgtctt tagcgatagc catgggaggg gactcctgcc      3660
     cgtgttagaa aaaagttttc atggtttaga tgtaaaaatt aatgttaatt ttcaaccggg      3720
     tgctcgtttc aaccaaatca tcggtgaaat acaaaaatgc aagcaggaaa tcaaatccaa      3780
     cgattttgta tttattattg caggcactaa caacattgac ccaagcaaat ctaaaaataa      3840
     gttgaaatca gaatttgatt tcaaatttct tcaaaattta aattgcaact tagtcctttt      3900
     tgatattttt ccccgtcatg acattactgg agtagaagaa atgatcaaaa ctgccaatct      3960
     tcacatgcgt aaaaacctga gaaattcttg cctttttctg gaatcaaaat ctttcctacc      4020
     tcgcaagttg tttaactccc gtggtctaca tttgaatgag aagggaaaga aggtcctggg      4080
     caacgtaatc atggacactg tttctaattt tgagtgcttt aactcaaacc aaaaagttag      4140
     ttttcaaata tttatcgctg atagtttaga agcaaatgtt gaccaagatg tttgcagtga      4200
     tattgaagac aaaccattaa ctgatgaaga aattctggcc aaactggacc agcctgattt      4260
     gtccaacgat caaaaacaac agctcttcaa tgtcattgca aaacatcggc atatattttc      4320
     taatattcca ggaaagtgta acaaatttat cggaaggttt cgaacaaaag ataaaatttt      4380
     gttcaacaaa cgtccttatc cggttccaga gtcgaaaaag gaagccgtta gaaaagaaat      4440
     ccataaaatg ctcttgttag acattattga acgaagttca agccctttct caaatccgat      4500
     agtgccagtc acaaagccag atggatctgt ccgtctttgt ttagatgcca agtctttaaa      4560
     taaacacata atttctgatg ctgagtctcc tgaaaccatc gattctcttt tatttaaatt      4620
     taacaatcca gcgtttatgt caactattga ctgcacatcg agcttttggc aagtcgagtt      4680
     agagcctgaa tctcgcgagt taacaagttt tcagtttgaa ggaaaaaatt tccagtttac      4740
     cagagtacct ttcggttcaa gtgtaagtat gcaactattc atcaaatgca ctgaagctgt      4800
     ctttggtcct gaggttgact ctttccttag ccgttatatt gatgacttca ggatagtttc      4860
     aaaaacattt gatgaacatt tgcaacacct tgataccatt tttcaaaata tcagtgatgc      4920
     aaacatgacc ctcaaattct ctaaatgtaa atttatccaa tcagagttgg attttcttgg      4980
     ctatattgtg tctaagtacg gaattaggat ggatccggaa aaggtaagag cagtgcagga      5040
     cttccctgtg cctcgaaatg taaaggatct tcaatccttc ctaggattca ttaattttta      5100
     tagaaaattt atttttaagt tttcatatct aacagtccct ttgtcaaatt tgctcaaaaa      5160
     agatacccga tttaagtgga ccgaaactca ccaaaaagcc tttgaggaaa taaaaaaagt      5220
     ttttataacc gaagtagtat tagcttatcc cgattttcga aagccctttt ttctgaacac      5280
     agatgcctcg tacaatgcag tggccggcga gttatttcaa cttgatgagg acggtgacag      5340
     aaggccgata tgtttccaca gtcggattct gacaccagct gagcgaaatt acacggtcac      5400
     ggaactggag ttgcttgcaa ttgtctcgtc atgtcaaaaa ttccgtcaat tcattttagg      5460
     gtaccctgtg acagtactca gtgaccacca tgcgctcacg ttcctggacc gttgtacttt      5520
     ggctcacagg aggataactc gctgggcact gtatttacag gaatacaatc tgactgttca      5580
     gtatataaaa ggttgcgata atattgtggc tgatacctta tctagatacc caccagaagt      5640
     ggaatctctt ccacctaaca acttggaatt taatgtcaat ttgtgcaaaa tttcctcaca      5700
     gttgtctgta caactcaaaa gcctacctgc tgaacagaga agggatctta ggttaagtca      5760
     aattatttct aatctagaat ctaatgtgag cttcaatggt tgtgagtgtt acttcataca      5820
     taataatatt ttattcttta agtcaccaaa aaacggatcc gtaaaattgt gtattccaca      5880
     atctttggaa atttctgtaa ttaaatcagc ccacaccacc attggtcatt ttggtggtac      5940
     aaagacttac cattacttaa aagaaatagc tatttttcca aaacttgaaa ataaagttcg      6000
     taatgtaatc aaatcatgtc tcgattgtca aaagtgtaaa atttctaaca aaacatattt      6060
     tccccctctt gtacctgtta tgtctaacaa acttttgtcc ttagtttcag tagatctttt      6120
     tggccctttg cccaaaagta agggtaactt tcaatttgtt cttttagcct tagatgttta      6180
     ttctaaattt atcaaagcct atcctcttag aaactccaca gctgttcttg tcactcgaaa      6240
     aattacccag aattatcttg tcgatgtcgg aaccccagag acaatcattt ctgatcatgg      6300
     cccttgtttt cggtccgact attggggcag tgctctgaag gattgcggta ttcaacccag      6360
     aaagacttcg gtttaccacc ctgcctcaaa cccagtagag agatatatga gaacgttggg      6420
     agaattcctc cgcgttcatt gccatgaaaa ccataagtcc tgggttgact acctcattcc      6480
     ttttgaggac tgtgtcaata gtacgtacaa tgaaagcact ggtttcacgc cgatcgaaat      6540
     tgtcaaaaag gtcaaaccat ttaattttct ttcaacatta gttaattttc cccctgattc      6600
     tgtcatacaa gatcacaatt taaaactttt agctcttgaa gaacaccaaa cgaagaaagc      6660
     aaaggtcaga aagcaacgtt tcgatgaaaa tcattccttg tacaacttta aggtcggtga      6720
     tctagtcctg ttacgtaccc accacctctc taatgcccta cgggctgaga ccaaaaaatt      6780
     ttttgctctg tttaatggtc cctataaaat tgtcaaagaa gtcggaaaaa atgctttcca      6840
     acttcaagaa acggactcca aaaggtcagt cggagtacat aatgctgttt tcttaaaacc      6900
     cttcaattcc ccaattctct aaagtattgt ctgaaagctt cgctgtgtct gtttgtgtct      6960
     tatcatctca ggatctctat aactacattt tgtccttaac cctaccttag ctagtaagtt      7020
     ccgtccaaca agtgactcta cccatttttt tttttagctt gtaagttttc gtctgccatt      7080
     gacctatcga agagtattgt ctttctagac ctgtcccaat tttttttttt tccttttttt      7140
     ttcggagatg gggggtaaag aaaccccatc catcccgaaa atactacttt ttttttaggc      7200
     cgctaacctt tgtttttatt atattttttt tagctttatt cataccatta tttttttttt      7260
     tttctgtgta ctgtcaatgc tgtcctcagc attttcttta gcattaagtt ctccctgaaa      7320
     tgatcacaac ttcccttccc ttatctaatt ttttttttat ccctagactt cgattcagtg      7380
     gttgatggat tgcacctcgc cttgcatccg gattgaaacc ggagaaatct ggtttcaact      7440
     ctgtgtgtga gcgtggtggg atcggtttgc cactgcaccg aaatctaaac cmcccccccc      7500
     cctttgtttt ttattttatg attttttttc tcttctctct caattttttt tctttttgct      7560
     tctctcattt gcttattttg ttattaataa gtatttctta cctgttaatt gaacgctaaa      7620
     ctctcaagca tcacgaattt ccttagtaaa ttatagtaaa tttttttttt ttttctcccc      7680
     ttacgttcca aatctatact caagatcttt ttaaatcttc tatttgttgt tctgttgtgt      7740
     catgaatcca atctaacagc ctatgactgg taagagacag ttgtagtcag atcaacccct      7800
     ttcggatgga ttgctggatg gccatctccc gattgcggta tccctttttt tttgtaattt      7860
     ttttttattt taggttcttg gacggatgaa ggtatccaag cctaagtttt actccctccc      7920
     cacctcccta aacaaaatca gcttgtttta tggctgataa ggaaaatcag atatttcagt      7980
     aacccaaata ttgcaccacc gctgagggga tttatcttga atttccaaaa cctcctaatt      8040
     gtctgtgaag ctggatggcc gaaagctatt aggtggtatt cctagaactg accattctat      8100
     ggaagaaccc acagtaactc tgtcgacaag tctgtggaat ttttttttct ctcttagttt      8160
     gtaaggcaaa tagttgtaag tttagtaagt catcgatagg cttatcatgg tgattactat      8220
     ggtcaatttt ttatgcccaa attttttgta gtgccatttc tgatgaacta tctcccttga      8280
     tcacggaggt agtatctgac gatataaatc tgttttctcc agggtatact tgatttaggc      8340
     ttccctagtc cccaggattc gctctttttt tttttcaacc ctgtgacaaa aagtctgagt      8400
     atagtcttta aattgttaaa tttttttttt aattccgctt gagaccctta acgaccccac      8460
     cgtattctta agtttttctc agattttctt gatctctcaa tttatcttat aagttacata      8520
     gaagtgctat gtaattgtaa tgtaatatgt gatgatgtgc ctcacaattt ttttctcttt      8580
     tgtctttttt ttttttctcc caaggcaaca atactgcctc gggaaccttt gttaaaattt      8640
     gttcatttag ttttagtgtt ttcttttttt aaataaatgg cggaaaaaaa tagtttaaaa      8700
     accctccgat tccgaccagc gactcaactt ttcaaaattt ctcaaatgta ttttatgtct      8760
     ttttgtactc tcatttagga ctcttcatgt gctattccat gtgagacgcg cggggctcct      8820
     tgctcctgtt ttgtctccag tcaccttctt ccatatcttt ctttttatct ctttctcgcc      8880
     ttctattctc tttctctttc ctttgcatct ccattttcgg agatccaaat ttccagttga      8940
     gccttgcgac tcacctggaa ctttgggggg tata                                  8974
//
ID   Gypsy-4_TrVa-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-404
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 233-233 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 404 BP; 81 A; 82 C; 101 G; 140 T; 0 other;
     tgtagcgtgg ttacatggct aagccattta actccgttcc cttcttctat ttcaaatttc        60
     cctcctttga ctggagacca atcaggaggg aggagttcgg tggcgtcctc actggtgcat       120
     gatgggtaat aggtgagagg gcattcgagt tgttccgctc caagcgtgag acgtgttttt       180
     cttttccaat taaatgactt gaaagtaagt aaagtttaaa gtccgggctg ggtccatttt       240
     gggcccagtc tcggcaaagt tagttaatat ttagttgcgg gtcggggtcg gaggtttcaa       300
     gccctcgtta ttttcgtatt tcgttgttgt gtttttttta ttaaaagttc gttagaactc       360
     atttgtccct gggatccccc ttttagtgct ctccccaggt taca                        404
//
ID   Gypsy-500_AA-I repbase;    DNA;    INV; 4669 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-500_;
KW   Gypsy-500_AA-I; Gypsy-500_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4669
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4669
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4669 BP; 1528 A; 824 C; 1048 G; 1269 T; 0 other;
     ttggctgacg atttgggata cgagctagac agcgttacgg agaatcggcg gaatttatcg        60
     gtctggtgca atggcttcgg taattatatt agcattaaga atcagtgaat aatattcaat       120
     gattcagcag aagttttcca cagattaagg aaaaaaatgt gtgataaaag tagttccaat       180
     tggaacaaga gcagagagta aagggaatac taaattccgg tctacttctc agaaagaaac       240
     gaagagaaaa aatctggtcc gtttctgtaa aaggaacgta gggagatatc atggaaattc       300
     ggtccgtttc aattagaaaa cgaaggaata aaacgaatca tccggtccgt tcctggaaaa       360
     aaaaaaacag tgaaaaacaa ttttttgcaa gactaaagag ttcaaacgtt accatagcaa       420
     cacgtcacat ggttattttt tagagaaatg tcaacctctt tgaagtgtga ttaaccgacg       480
     tactgataat ttttaatttg cagctcaatt ttaatattca gcctttctcg gaaaatggag       540
     atggatcgtc caatgcacgt tgggaacaat ggaaagacca atttgtttcc tacttagtcc       600
     tcaaaggaat tgacgatcat gacgaaatgt ttaaagccct aatgtgtttt ggcggaggtg       660
     acgtacgtaa gattgcccga gatgtggtgg tggacggatc ggccgttttg gataaccgat       720
     acagaatggc catggacttg ttggacaatt actattctcc caggatgtcc cagagatatg       780
     aacgcttcaa gtttcgccaa atcttgttca atccgaacga gaaaattgac cagtttgtag       840
     tacggttaaa gaaacaggct gcgctgtgcg gatttggtga gcagatagat gacatgatta       900
     tggatcaaat agtggttgca acgcagaacg acgacaaact ccgggccaaa tacctcgaag       960
     ctgacacctc gttagacgaa atgctgaaaa ttgcacgtac cgtaaaatta cggtactcat      1020
     gaaacagtga aaacgcagtt acacgaattt cgcgaaaaag ttgtccccat ggcggagttg      1080
     aatactgtgc ggaactttac aagtcgtcgt gacccgaagc gggataatcc gtcctgttcc      1140
     agatgtttgg gaccgcacct cgcatctgat gcacaatgtc ctgcgaaagc atcacgttgc      1200
     agcaaatgtg gtaagtcagg ccattatgca cggtgttgta aaactactgt tttccggcct      1260
     tttgctactc ggagaggacg aaacgattcc aaggaacgta gttggaatat tgaaaagaaa      1320
     gagaagttcg tacgtgaggt tgacgacgtg acgaaatcag ttgaaatccg ggaactattc      1380
     caccttgagg gtaagcgtac agtgaatgct agcgtaggag gagtattcgt ccgtttcgtc      1440
     attgatactg gagctgatga ggatgtcctg agtgttgaag actgggctaa tctgaagaaa      1500
     attggattca aagcgttcga cattagaaaa ggcagcgaga agatttttcg tgcatatggt      1560
     actatgaagc ccctggttgt tcttggtgaa gtagatgctc gcattgtctg tggggaatca      1620
     tcttgcgaga ccacgttctt cgtcattcaa gatggaagat gttcacttct ctcaggaaga      1680
     acagcagaaa accttggact ggtgaaattc ttacatacag taagtgaaga gacgcttcca      1740
     tgcataaaag gtaagaaatt ttaggaaata ttattttaat gtaaaataat aataataata      1800
     aaaaaaataa taatccgtta aattttaaat aggctactgt gctaacataa aaattgataa      1860
     atcaattaca ccggttcaac aggtgtatcg tcgaatacct ataccgttgg aagaacttac      1920
     tgtgctcaaa ttaaaagaac ttgagcgtca gaatgtaata gaacgtgtaa ctgaagcgtc      1980
     tgaatgggtt tcacctatga tggtgaagcg taaaagtgca ggtgatgtta ggatcattat      2040
     cgatcttaga gaagcgaaca aagcagttgt aagggaagtt catccattac caactttcga      2100
     acagatggtc actcggttaa gaggcagtaa gttttttgct aaattcgacg ttaagcaggc      2160
     tttccatcag ttgatgctcc gtgaagactg tcgctatata acgacgttca tttcaccatt      2220
     agggttgatg cgctacaagc gtcttgtatt cggattatct gctgcaccag aattgttcca      2280
     aaaatgcatg gagtcacttc taggtaatat ttgagatgaa cctacaatga gaaaaaaaat      2340
     caattgaatt aaacgtaatt aactataaaa aaaaaattct aggtgatctc ccgtggttga      2400
     ttgtgttcgt tgacgatatt ttggtttttg cgcccgatga aactttaaaa ataagatgca      2460
     gtattttaag gcatagatta gcgagttaca atgtaacact gaacgaacag aaaacggaac      2520
     aatgtagcag tgaggtagat tttctaggtt ttcacctatc tgctgatgga gtaaggatat      2580
     ccaacgataa aattgaagcc attaccaaat tccgaagacc tcagtcagca gaagaagttc      2640
     gaagtttcct agggctagta acttttgtag gccgatatat tcctcattta tccacattga      2700
     gccgcccttt gaacatgtta acacgaaaag ggcatacatt tgaatggaca cagcaacatg      2760
     ataaatcttt tcaacaacta aaggacagct tatcaaaagc tgagacgttg gcgtttttta      2820
     atcctgactt ggagacttat gtaattgcgg atgcgagtcc tgttggtctt ggagcagtac      2880
     tttttcaaaa agaacgcaat ggctcatata aagtaataag ctatgcttct aagacccttt      2940
     cagaggtgga acgccgttat gctcaaactg agagggaagc tttggcttta gtatgggcac      3000
     ccgagagatt ccatttttat ttgtatggaa agcctttttg gttgattacc gaccataagc      3060
     ccttagttgc gatatttggg gacaaatcca aaccttgcgc aagagttgaa agatggaaat      3120
     tgcgccttat gtcttacgac tataaagtta ttttcagacc cggtaaactg aatatcgctg      3180
     atcctctttc gcgtttgtgc caggaagcat cgagtcaagt agaaacttat gacgaagaaa      3240
     gtgaaaggat aataagactg gtatccaacg attcttgccc agttgctgtt cctctttgcg      3300
     aaataataga tgccacaaaa cgagatgtag aattattgga attgataaaa tggttacctt      3360
     atccaccaaa tagatggcct aaaacgttga ttcgctataa actgatagca acagagctgt      3420
     caacagatgg taaacttgta ttgaaaaaca ataagattgt cattccaaaa attttgcaaa      3480
     accaggttct agctcttgca catgagccac acctagggat tgcagcaatg aagaggagat      3540
     taagggataa agtttggtgg gccagaatcg atagaatgac tgaagatttt gtaaaatcat      3600
     gtaacggttg tttgctggta tcagaaccgt cgacagaacc aatggtgaga actccattgc      3660
     cttcaggccc atggcaaaaa cttgctattg atttcaatga agttactaat ggcgtacact      3720
     tactagtcgt agttgattat ttctcaagat ttccagaaat tgagataatg acatcaacaa      3780
     cagccgcaat cacgatattc aagctaagga tgatttttgc aaggtatggt tttccgaaag      3840
     aaatcgtttg cgataatggg ccgccgtttg gatcagaaga tttcaatcat ttttgtaata      3900
     tctcggggat cgatgtaaag cactctaccc catatgctcc attccaaaat ggattggtcg      3960
     agcgatataa ccggacttta ctgaaaactg ttcaaatcag cattactcaa ggaagggact      4020
     ggaaaagtga cctctatgac tttttattag cgtatcgtaa cacgccacat tctgttacaa      4080
     atgaaactcc tgcaaaactt atgttcggtc gcagtttgaa ggataagata ccagagatac      4140
     catcaaatac aaaagtggat aagaatatga gggatacaga caacactaaa aaggaaaaag      4200
     gaagggtgta cggagatcga agaagacatg ccaagcatat tgaaatcgat gttggtgatc      4260
     acgtcattgt gaagaatata gtgaaacgaa acaagctaac acctaacttt gactcgcaac      4320
     catatctggt tacacataag aatggtacac gtgttacggt gaagaattta gcgactggag      4380
     tggagtacga tagacacgtc aatcatgcga agcgtttaac ctgcagtaac ccattcttaa      4440
     cgttagaaga accttcatcc gttttcgatg aagttatggg atccgacgat acaaatacag      4500
     ccgaaaagct accggaaact actgtgcctg gattaaccac aaatactgga gttacgaaac      4560
     ttcggaacaa tcgaccggtt agaaagcctc agtatttgaa agattattgt gtttataaat      4620
     gtaaaaagat taactagaat taatttattt tattgaaagg ggggaaaga                  4669
//
ID   Gypsy-500_AA-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-500_;
KW   Gypsy-500_AA-I; Gypsy-500_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-122
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-122
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3106-3106 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 122 BP; 36 A; 23 C; 24 G; 39 T; 0 other;
     tgtagtaggc tgtgcaatgg atttgtaatc atagtaggca taataaaata gatcgatctc        60
     tttgatccag actgtcaagc tgtacacacg tgttttaatt acctctcgtt gacgacacta       120
     ca                                                                      122
//
ID   Gypsy-501_AA-I repbase;    DNA;    INV; 6281 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-501_;
KW   Gypsy-501_AA-I; Gypsy-501_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6281
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6281
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6281 BP; 2047 A; 1372 C; 1401 G; 1461 T; 0 other;
     atggcgatcc tttgccaggc gttgctcatt aggcaacaaa aatttagaac cgatttaata        60
     tcccagaaag gaatcaccat ggaattgatt aaacttgtct caattattaa ttgagcaaac       120
     acgactgcgg aacacaattt cattgagtaa gcggactcaa aagtcgcgca atgtaatagc       180
     gggcaaaatg gccgcgcttg ggaaaaaagc ggactggaaa aaaaatgtcg cgcattgaaa       240
     tagcgagcta aaagctgcac taagaagagg cggacaaata aatgtcgcgc ataaacaaag       300
     ctacacaaaa aggaagcgga ccaaagtcgc gccgaataat aaaaaaaaaa aattgccaaa       360
     ataactagac cgaaaagcgg acaaaaaaaa aaaaaaaaat gtcgcgcacc gaagtagcga       420
     gcaaaatagc tgcgcttaaa ttttgcagac agcattcact caagagagcg ggcgaaattg       480
     ccgcgcaacg aaaattcagg caatgattaa ccaacattat aaaaaagcgc tccgtttcca       540
     tgtccaaatt gttccataaa tttgttttat tttttgattg ctttaatgaa aactaatgct       600
     attgctttgg attataatta cagactacgg tacaatacac ccaagttatt gaagagacta       660
     ctgcggaata atggctaaca acggtaaata cgttcgaacg accgttgcat cggatgacga       720
     tgcgaatgac atccctgtcg agaccgcgac cgccgacctg ccagtcggcc aatctagcag       780
     cgtaacaacg gtcgattcgg acacatcgag tatcagggac gacagtgaga gcagcagcag       840
     ttgcagcacc tgcgatgaaa gaagtgattc cgacactgac aacgaccatg gcgaagaaga       900
     gcatccgaac ccgaccagcg aaacaaccaa cccaacagct tactcaattt ctgaaacagt       960
     tccgacagaa cattcgaatc ccgatacaat ggagtacgtg cgtaataatg aacgattgga      1020
     gcggatggag cagatgatcg cgggcataaa tgaaacatta agtcgttttg gatccaatcc      1080
     cacgccagca cggaacaatc ccgataatag ctggagtcta ccgaatgagg caagcgcaaa      1140
     cgtcggcgag aacgtcactt caagcattcg ctgggatcac gttaaaccgt ttccaatcgg      1200
     catcccagcc aataaaatgt gggaggagtg gaaccgctac atcgaaaatt tcgaaatagc      1260
     ggtttcactg agcaacatga acaacccggc caagcaaacg cagttgctat atctctccat      1320
     gggcaccgaa ctgcaggaaa taatgaaagc tgccaaacta cgcccaagtt tggccaaacc      1380
     ggactgttac agggcgttcg tcgcaaacat aaagaactat ttccgctcga tgaccgatac      1440
     cgcggctgaa cacgaggctt tctcacggat gaagcaagaa agcggggagt cagcggtcgc      1500
     ttttcatgca aggctgatgt gcaaggtccc tgcgtgcaat tacagcggcg atgaagacaa      1560
     attcgtgcat gcacaactac tcaaaggact caggaatcga gagttagttc ggcaagcacg      1620
     aatccatcaa ttcgatacaa attgcattgt gcagtcagcc accagggagg atgctttcga      1680
     agccgagatc cgacaacagg agggctctaa cgttttcgaa gtcaggagag cacagggtta      1740
     cccaccatcc acccagcgta accgaaagca cccgaatttc ggtagccgtg ccgatgaacc      1800
     accgaccaaa caataccgaa gcaataacct gaaccaacga tcccaagaaa atcgccaacg      1860
     gtgcacgcgt tgttttcagt tccgacaccg gaatgggcaa tgtccagcac tgggccgcag      1920
     ttgcaaccac tgtggtaaac ggggccactt tgcagctgcc tgtcgtcaga aacgtgttaa      1980
     tactgttaga tatgagcaac atgatgggcc tctggacaaa ccagcattct ccgatgagga      2040
     gaagcacgat gataagaagc aggtaatgaa catttgatct ataaaaccgt tgaactgaat      2100
     ttcataagaa gataaaataa aatagctgaa aaataaaata acacaacttt aacattattt      2160
     gcaatatcct ttccaccctg tgtaggaagt caatgccctt tccttagagg atgtcatggt      2220
     tgactgttct atcggatctt tcacttacat gcgttttcta atagactcgg gtgcagacgt      2280
     caacgtcctt ggtgggaaag actgggagaa attggaaaga gaggctagga tgggcaaagc      2340
     aacgattgaa atgcttgaaa gtagttcaag taacggacta catgcttacg gaacgcgtaa      2400
     accgatgact gttgaatgca cattcaaagc aagcatcacg gctaaaactt caagttcctc      2460
     gaagtccttg aacgaagcga ttttccacgt agtacccgaa ggggccaggt cactcctcgg      2520
     gcgatccacg gcaaatgatt tgggactgct acagatcatc aacaatgtaa actgcgacga      2580
     cgacggcatt tttccgataa tgcctggggt gaaggtgaca ttcagcatca acaaagatgt      2640
     tccacccact aagagcgcct actataacgt cccggctgca tatcggtgag taatcaaaaa      2700
     tatatatgag aaataaatga ggaaatagaa actacagcac aactatatat cgtaaatagc      2760
     agataccaac atactttgaa atattaatat tatagtacaa acctttaaat ctaccaatcc      2820
     aaaaatcatc atggccttac aataacaata ataataataa tagaataaac ttgatttgca      2880
     ttgaacgtga gagttgggaa ccgctgattt atagaagcca catgagagat actaggatat      2940
     ccaaatcttg cgtctgttta aatctaccct tatgctatta cagggaagct gcacgccaga      3000
     gactacacga aatggaaact cggggtataa tagaaaaggc cacgtccgct ccgaattgga      3060
     ttagtggcat gtccgctgtg gccaagggca aaaacgattt caggcttgtg gtcaatatgc      3120
     gcgccccgaa tcgtgccata aaccgcgagt actatagact accattgctt gatgagatga      3180
     gaacaaagct ccatggtgca aagtacttct cgaaacttga tttaagcaat gctttttacc      3240
     accttgagct atcgcaggag tcacgtgact tgaccacctt tttggctgag gatggtatgt      3300
     accgtttcac tcgcctcatg ttcggtgtga attgcgcgcc tgaaattttt cagcgcgaaa      3360
     tggtacgcat cctaaaggac gttgagaacg ttatagtgtt catcgacgac attctcatct      3420
     ttgctaacac tctcgatgaa ctccgagcaa cagtcgctaa agtactacga attttgaggg      3480
     aaaataattt gacgttgaac acaaccaaat gtgaatttga ccaaactagg atcaagtttc      3540
     ttggccatga acttgatgct gatggattcc acatagataa cgaaaaaatc aaaagtgtcc      3600
     acagtttcag ggaaccatct accctgtcag aactttgcag cttcctaggg ttagcgtcgt      3660
     tcctcaaccc ctatattaag aactttgtga acacttcgag cccattgtgg acagcaacta      3720
     cgtctaagga atggttatgg ggacaggaac aaagtaaagc gttcaattcg atcaaacagc      3780
     aaatcataga ctgcacgatt tcgttggagt tcttctccga aagcgataag accatattgt      3840
     ataccgatgc ttccccggtt gctttgggcg ctgtactagt acagcaaagc acaaataatg      3900
     caacaagggt aataagtttc gcctctaagg ctctcacccc aaccgagaaa agatatccac      3960
     agaaccaaag ggaagctttg ggtgcggttt gggcagtgga acacttttcc tactttctgc      4020
     taggtaggaa cttcacgctt cgtactgacg cccaaggagt caccttcatt ctcaatcgat      4080
     caagagaaga atcgaaaaga gcactaacac gcgccgatgg atgggcactc cgattaagcc      4140
     catataatta tgatgttgaa tatgtccgtg gtagggagaa cattgcggat tcgtcttcaa      4200
     ggctttatat cggagaagac gcgccttttg aagaagagca tagtccctgg gagatagctg      4260
     caatagaggt aaattcgttg gaattcctaa cggaagcaga cattaaaaat gccactgatg      4320
     aagatgaaac acttctatca gtaatcaacg ctctgaactc tggtcattgg cacagagacc      4380
     tgcgcaaatt ccaagccatc gaagaagagt tgaacgttct caatggagta cttttgaaaa      4440
     cgggttgtgc gatagtacca aaatcgctac aaaatcgagc tctggaagtt gcccatgaag      4500
     gacatccatc gactgccaag atgaaaagca ttatgcggca gcgggtctgg tggccaggca      4560
     tgtcgggtga cataaaaaaa tgggtggagt cttgcagaac ttgctgcata aacggaaaac      4620
     cggaaaggcc cacaccaatg gaaagagtgt ttgccccgaa gactgcatgg gaatcaatag      4680
     ctttagactt caacggtcca tatgcaaagt atggaggaat actgatcctc gtcgtagttg      4740
     actataggtc aagatatatg atggcccgtc caataaaatc caccagattt gattgtgtcc      4800
     ggaaaattct tgacgatata ttcgaaaaag aaggttaccc aaaaaccgtg aggaccgaca      4860
     acggaccccc atttaacagc gttgattttc tggaatactg caagcagcga gatattacac      4920
     tgtctttctc gacacccctt tttccacagc agaatggtct cgcaggaagt tgtatgaagc      4980
     tggtgaacaa agctatggcc acagctactg cgaataacac caattacatc gaagaattga      5040
     ggaatgcaat taacgcccac aacgcggccg aacatagtgt gactacggtt ccgcccgagg      5100
     aagtcatgta cggtcgaaag attaagcgtg gtttaccact aatccagcgc gggtaatctg      5160
     attttaccga tgaacaactg gaacacagcg accgcaaaga aaagctagca ggaaagcacc      5220
     gagaggacga acgacgtggt gcccggaaat gcaaactaat gcctggagat gaaatagtaa      5280
     ttgaacgaca gaatcgagcc aaaggcgagt cgcgcttttc gcctacaagg tacaccatca      5340
     ttgaacaacg aaacggaagc ctcgtcctaa acgacaatga cggaaaggta actaagcggc      5400
     atgtatcaca gacaaaacga atcggaccgt ggcgtgattc acatggccaa aaagcaatcg      5460
     taagttccac taaacacatc ccaaccgatg gcgatacgaa tggcattaat tcagcagaac      5520
     cagtacaacg tccatcacgt gaaagaaagg tacctacatt tctgaatgat tatgttcgat      5580
     tgattgattg agttataatg taataacgag caataaaata aaggtaactg atgactatcg      5640
     taaaaaaact tgattaaaat aaataaaaaa acgaaggaat atccaacatt tgcggtgtat      5700
     aacacacttt tgaatctgcc aaaatcatag gaaaatgatt ctttcacacc cgtttccttt      5760
     tcttgctttc tgtgtaaata aactaatcga gaaagcgcta actacagcga tattgcatat      5820
     tgaacttaaa gagcacagat cgtattgaca tcagtccacc aactttacac agatgacacc      5880
     cacgctttcg tatgtttttc tcccgttggt tttcttggtt gttattataa atatgcaatt      5940
     tatgccggaa caaattgatt gaactatgaa gaaatcagaa tcaaaacttt gaacggttca      6000
     aaatagaaaa caaaattgga aatgattgac agatggagat gacagacacc gcgctactgt      6060
     ctcgaagagg ctttttaata ggcgtgcctc atcggcatga tcggcacaag tatcgtcgtt      6120
     gtttttaagg gcggtttgta attacacggt aatctcacgt taacgaatct tgagttcaca      6180
     aaatcagtcc atggtcgatt gagtaggatc atctgtgtag tttattcttc tctattttgt      6240
     ccctcctttt taatctatta ttttttggag aagagggtgg a                          6281
//
ID   Gypsy-501_AA-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 25.10, Created)
DT   17-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-501_;
KW   Gypsy-501_AA-I; Gypsy-501_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-206
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-206
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3126-3126 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 206 BP; 57 A; 43 C; 50 G; 56 T; 0 other;
     tgtgtgggtg cgaaagggtt aattataatc agtgtactct gagcttaact tccagtggat        60
     ggcactcaat atgagtacca tcgcagtagg cacatgcagg cagaaaatat caattcctcc       120
     tctttcgatt accaaccggc gtggaggtaa gacctactac ggcaattacg ggtgattcct       180
     ttctggcagg tatttggaat aacaca                                            206
//
ID   Gypsy-502_AA-I repbase;    DNA;    INV; 3885 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-502_;
KW   Gypsy-502_AA-I; Gypsy-502_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3885
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3885
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3885 BP; 1055 A; 946 C; 905 G; 979 T; 0 other;
     ttggtgaccc cgacgtgatc cgggaacacg tacgcgtact gcggtagtga aaatccggtc        60
     gttttatcgt caacaccgtt ttcgattttc ctaacctcaa ctacgatatg caggacgaaa       120
     acgagcagca ggacgcgcgc actgcagctg tagtttcgga gaagctgcct gatttctgga       180
     agtcggatcc ggagatgtgg tttgcgcagg ccgaagcgca attcatcctc gcaaacgtta       240
     cgaatgatga cactaagttc taccacattg tggcaaaggt ggaccagtcg gtgatttgtc       300
     acattgctga cttggtatcc gctcctccag cggaaaataa gtaccagtcg ttgaaagctc       360
     ggctcatatc acgattcgct ctctcaccgg aggcccgact ggaacgactt cttggtgcca       420
     ctgatctcgg cgacatgcgt ccaacgcacc tgcttgctaa aatgcaagag ctggccaccg       480
     gactcaatgt gaatgacaac ctgctgaaaa tgctttttct ccagcgcatg tgcgccctat       540
     cctgacgatc agtgacggta cgctttccaa gttagcggag atggccgaca aaatgacgga       600
     atctcctaac gtcccagccg tttctactgc tgctaatgga acctcctcca caacgaatga       660
     acagatggaa cacatgaaag agcagttgga aacgctcagc gcagaatttc gtcgtctcag       720
     aagcaacagt aacgatcgtc gtcgcagccg atctgcatct tcatccagga tgacgagcga       780
     aatgtgctgg taccaccgaa cgtacggtct acaggcacag cgttgcaagc agccctgtca       840
     gtacaagaaa ccaaaaaact gaagttctgc tcacctgaat cggcgaagat gagtggtact       900
     ttttcaagcc ggcgcctcaa aatctacgac aaaacaagca atctgtgttt cttaatcgat       960
     acgggatccg atatctcgat aataccggca tccaggaagg agaagatgtc tggaccaatg      1020
     cctttcgtgc tccacgcagc caacggttca gaaaaaaaaa cgtattccac gaagttcatc      1080
     actaccgatt tgggtttgag acggcgtttc acatggaact ttttagtggc ggacgtcagt      1140
     caagcaataa tcgatgcgga tatcttatcc cacttcggat tgttggtcga ccttaaaaac      1200
     agcagccttg ccgatgctaa aacgaaatta caaaccgttg gcaaagtgat gaccaccgaa      1260
     attcacagca taacaaccat caacataaat cacccatttc atgaactgtt gatggagtat      1320
     cgcgaaatta cccttccatc aaccttacga gccgatgttc agcatgatgt aacgcaccac      1380
     atcgtcacaa agggtccgcc ggtagcatcg aaaatgagaa gaatgcatcc ggacaagctg      1440
     aaggtagcaa aagaggagtt tgcttttatg tcggagttgg gtatttgcag accttccagc      1500
     agcagctggg ccagcccact ccactgtgta ccaaaaaagg acggtcagtg gaggtttgtc      1560
     ggtgattatc gccaactgaa taaggttacc gtaccggatc gatatccggt acctcatgtg      1620
     cacgatttgc tcaacgcttt tcaaggtaag catattttca ccactctgga tcccgacatc      1680
     ccaaaaactg ctgtaataac tccgtttggg ttgtatgaat tcactcgcat gcaattcgga      1740
     ttatgcaatg cgagccaatc gttccagcgt tttatgaaca aaatttttgg cgatctcgac      1800
     ttcgtggtag tattcattga tgatattggc atcgcttcga agactttgga ggagcatatg      1860
     gttcatgttc gaatcgtttt tgaacggttg aagcaatacg gccttgttat caacgtttcc      1920
     aaaagtcatt ttgccaaatc cgaggttgac ttcctaggct atttggtgaa cagtgaaggg      1980
     attcgtccgc tgccctctag agttcaggcc gtgctcaatt actcgcggcc tacgaccgta      2040
     aaagatctac gcagatttct ggctttaatt aatgtctaca agagattcat tcctaatgca      2100
     gtggacttgc agtctgatct gcgcaaaatg atacccggta ataaaaaaaa tgatacgcgc      2160
     tcgctcgaat ggaataattc gtctcaattg gcttttgagc ggtgtaagcg gtcactagcg      2220
     gattgtgctt tactgtatta tccggattca aataaaccgc tatcattact gatcgacgca      2280
     tctaacaatg cagctggtgc cgtgcttcag caatattctg agtcaacgtg gcagccaatc      2340
     ggtttctttt cggaaaagtt ctcaagtgct caacggaact attctacgtt tggtcgagaa      2400
     ctcacagcca tgaaaatggc cgtaaagcat tttcggtatt ttctcaaggg tcgccagttt      2460
     tgcattttaa ctgaccataa acctttgaca catgccatgg gaactaactc ttctagcaga      2520
     cttccgcacg aagacaggta tttacgctac atttctcagt tcactactga catacgccac      2580
     ataagcggtg tagagaatac tgtagcagac gctttatccc gagtcgaaac agttgctatt      2640
     gttgattaca acgtcattgc tgctgatcaa gccgaggata ttgaactcaa acgcttaatg      2700
     acatcatcct cattgaaaat ggaaccgata cgatttcctc atgttacacg tccagtatat      2760
     tgcgatgtgt cactcaaaga tcgaattcgc cctttcattc cagcaaagca tcgggagtct      2820
     gttatgaagc atttccacgg actggcgcac gttggagcac gtgccacaag gaagttggtt      2880
     tcggacaggt tcgtgtggcc tgcaatgaac aagaacgtta accagtttgt tagaacatgt      2940
     ttggattgcc agcgatcaaa ggttaaccgc cacaccgtat caccatatgt accattcgac      3000
     gtgccgaagt ctaggttccg tcatctacac atcgacctcg ttggcccact gcctccatcg      3060
     catggaaatc gctacgtgtt aacaatcatc gatcgattca ctagatggcc tgaggctatt      3120
     ccattaccgg atatgaccgc tcctacagtc gcaaaagcat tgacaatgga atggatatcg      3180
     cggttcggaa ctccggagac tgttacatct gaccaaggcc gccaatttga atccgatctg      3240
     ttccgtgagc tagcgtacat ccttggcact caccatattc gcacgacggc gtatcaccca      3300
     caggccaacg gaatggttga acgctttcac cgtacgatga aagcagcatt aatgtgtaag      3360
     aacgtaaaac gttggagtga ggatttgcct ttggtattac taggcctcag aagcgcgtat      3420
     cgtgaggatc ttaagtgctc tgcggcagat ttggtatacg gtcagccgtt gcgccttcct      3480
     ggggaatttt tcgacatgcc atcacacagc gttgatagaa cggacttcgc gcagcagctg      3540
     catcaggcat tcagcagaat acgtccacca ggtaccaatc atcacagcaa accagaagtt      3600
     ttcgagcata aggctctgaa aacatgcagt cacgtgttcg tgcgggtgga catggttaag      3660
     cgagcactac agcagccata tgaagggccg taccaagtgt tggaccgttg ggataagttc      3720
     ttcaatgtgt caatatctgg caagaagcag agaatttcta ttgacagact aaaaccggca      3780
     tttacatgca acgaagacat ttcagactac cctggcgaag ataatcaaac tgtagttaca      3840
     cgatccggac tacgtgtccg gttcttggcg taactggggg gcgca                      3885
//
ID   Gypsy-502_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-502_;
KW   Gypsy-502_AA-I; Gypsy-502_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-159
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3127-3127 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 159 BP; 45 A; 33 C; 33 G; 48 T; 0 other;
     tatgggacgt catttatggc gaacccatga gaggagaaac gtcatcattc gaagtgtcgc        60
     attaccggta aacaaacgtg tattcggtag agaaaataaa gttattattt ttcactgtaa       120
     atcgcgttct ttcggtcttg tttcatcacg tcccccaca                              159
//
ID   Gypsy-503_AA-I repbase;    DNA;    INV; 2898 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-503_;
KW   Gypsy-503_AA-I; Gypsy-503_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2898
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2898
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 2898 BP; 906 A; 588 C; 699 G; 705 T; 0 other;
     atggcgcaga taatgcttcc tcagggaaaa aagtttctaa gaagccagca agtgatgcaa        60
     caccaacatc ggaatcgatt tcagcaaaaa tcgatgctcc caagaaagtt aaacaaaaag       120
     ctttggaatc cagtgctctt gcaaagaaga agaagaagaa ggagaggcaa cagaatgcgc       180
     gaaagttcga attgatggcg aacgagttgg aaaacgaaaa atcacgctca gacgagcttc       240
     gaaaagagtt ggaaaaggtt cgaatggaaa agcagcaact cgaatctaca gcagcagcaa       300
     cagcagcagc atcagtcgat gttgagaatc aaagtgtcag tgactacagc gagaattttc       360
     gtccacacag cacccaacga gaaagatcca cgcttgaaga gtctcggttt atgtcctcga       420
     tcaaccaatt gtcaatatca tcagtgaatg ttcctgagtg taaaccagtt ggagaagaaa       480
     ccgagataca acgccatgct tatgagcaat ggaaaaacct gttggtggat gcaaaggagt       540
     aaaaaattac cttgacgacg tactggtcca tggcaacaca aaggaggagc acgacgccaa       600
     tttggcggca gtacttgcca ggctaaaaga gcacaacgtt aagttaaacg aatcaaaatg       660
     tgtgtttgga agtcagtcag ttgatttcct tgggtttgtc ctcacgtcag atggttggca       720
     aatcgatgat gaaaagttga ccgccataag aagctttaga aggccagaaa accggaatga       780
     agtgaaaagt tttctcggtt tagtgacctt catcgaccgt ttcattatca acagggcaga       840
     taaaaccgaa aagttaagag cattggcaaa ttcagatgaa ttttattgga cggaactgga       900
     agaacaagaa tttcgttttt tgcaagatgg ggctctgaat accatcaaga cacttggcta       960
     ctatagtcca acagatgcta ttgaattgta cgtagacgct tctcctattg gcttgggagc      1020
     ggtgttggta caatttgacc aaaccggtgt accgagagtc atagcttgtg cttcaaagtc      1080
     gttaactacc acagagaaaa aatacccaca tgcacataag gaatcattgg ccgttgtgtg      1140
     gggtgtagaa cgtttttcat catacttact aagcagacac ttcaccgtca ggactgacgc      1200
     agaggccaac gaatatatat tcggaactaa tcatcgtatt ggaaaacggg caatagcgcg      1260
     ggcagataca tgggcccttc gtttacagtc gtttgatttt gagatcaaaa gaattccagg      1320
     agaatctaat gtagccgatg cactctcaag gctgatagac caatctcaaa atgcagttcc      1380
     ttttgaggaa gaagacgata atcattttct tttcgcgatt gatacaggtt ccttgaatat      1440
     atcgtgggag gagattgaag tcaactccga gaatgatggc gaacttcaac tgttacgcat      1500
     ggctatcgaa caggactcgt ggccacaaga gcttcgtaga ttcgaagctc aaaggaaata      1560
     ccttcgcaca ttgggatccc taatcttcaa ggaaaatcgt gtcgtcttac cacagattct      1620
     acgtcaccgt atcatgcaga ctgcgcatgg tggtcatatc ggtgaaatgg ccatgaagcg      1680
     catcgttaga gaatatttct ggtggccgag aatgtcttcc gacgtagaaa atttcgtccg      1740
     aaaatgcgaa acgtgtcttc gactttccaa gaaaaaccca ccagttccac tgtgtagccg      1800
     agatttgccc aatggtccgt ggcaaatatt acagatagat ttcctgagtg cccctggatt      1860
     cggatctgga gaatttttgg tggtcgttga catctactcg agatatattt ctgttgttga      1920
     aatgaagcag atggatgcgg agagcaccaa ttcagcgctt tgtgccgtat ttcaacaatg      1980
     gggttgtccg cttattgtac agagcgataa cggcccccct ttccaaggcg cacaatttat      2040
     taagttttgg gaggacaaag gcgtcaaagt tcgaaaatcg gttccgctca gcccacaatc      2100
     aaacggggct gtagaacgcc aaaaccaggg cataataaaa gctttggctg catcaaaaat      2160
     cgaaggaacc aactggaggc gtgctctgca actctatgtt catcatcaca acaatttagt      2220
     gcctcattca agactcttgg tgtctccatt cgagcttatg tgcggatgga agttccgcgg      2280
     acattttcca tgtctatggg aaaattcatg caaacgactg gatcgggctg atgtgcggga      2340
     aaaagatgct gaaacgaaat tgataagcaa aagagatgcg gatttgacgc gaggagcaag      2400
     agagtcagat atcaaaattg gcgatacggt gttattagcg cagtgcaaaa agtccaaaac      2460
     agatcctatt ttctcgcaag aacatttcag ggttgtagcc agagacggcc caaaggttgt      2520
     ggtgatcagc aggaatggta tccagtacgc tcgtaacata caggacgtga aaaaggctgt      2580
     cgaattttca aatgaatcca ccgaggacga tacgccacca gatattgaat cgtcaactaa      2640
     tccggaaagt tgtatggaag aaacgaggaa cacttcggaa tatccattgt ccgtggatac      2700
     atcacttgga agcagcgctg cagcaggata ttcgcaatcg ctgcccaaat cgctgcccat      2760
     atctgcgtcg gcgagaaatt cttaaaaaac cacgcagatt cgacgacaga ttcgtgtatg      2820
     tggttttcga atagctgttg ggagaattga tgattatttt tttttctctt ccaatatacg      2880
     agtagagatg gaaaagaa                                                    2898
//
ID   Gypsy-503_AA-LTR repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-503_;
KW   Gypsy-503_AA-I; Gypsy-503_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-574
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-574
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3128-3128 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 574 BP; 231 A; 88 C; 117 G; 138 T; 0 other;
     tgtagtagat aagaagagca catgaaggaa gaatacaaat aaacaatgat aaacttacca        60
     aatctgaata attcacgact gaaactcaat ccgatgacca acgaagaaca gttcagttac       120
     tgatttgatg aatgcataaa caaaacggaa tcaaaacaaa atcaacgaaa aactgacgtt       180
     tcacatacag cacgaaaagt ttagaaatag aattgggcga ttctatttcc atagtcgatt       240
     ttcgattatt gtttagaaat gcttagaagg ttcgaaaagc ttgcatagaa acttgaacat       300
     gaacttaagg taaaacgctt tcgggagctt aattcgaaaa acgaggtccg aaaaaaaaaa       360
     aggtgcgttc ttgaaaaagt agatatggcg ttaattaaac acatgagtgt gtgtggaatg       420
     gatgaaaaaa agaaaaataa actacggtcg ggagtgttca aactgatccg ttcccgatca       480
     ttcagaaaac gaagtttaga gcgaacggaa gtaaaacatc gttaccgcag ttgtgttttt       540
     cggttcacca gaatggagaa gaaaatttac caca                                   574
//
ID   Gypsy-504_AA-I repbase;    DNA;    INV; 6527 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-504_;
KW   Gypsy-504_AA-I; Gypsy-504_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6527
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6527
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6527 BP; 1981 A; 1319 C; 1533 G; 1694 T; 0 other;
     ttggcgatcc ttgccagtta gataattgac aacgcaatag tttagtacct ttttatttat        60
     taaacgattt ttagtgaata gtgaaaacga aaaatgcaat gggaagttcc acgacgaaaa       120
     aaatgtgtat atacatgcaa tgtgttgttt caaattggca gcttgttatg cccaattgtg       180
     cttggttttt ttttctctta tgtttgtggt cgaaagagcc acaaggtgtt ctggaagaat       240
     accggataat tgcttttaaa aacgtatggt tcatgtcggt atgttttgca gatgagatgc       300
     tgcatggtgt tctagaagaa taccggaaaa aaatctttgc atggaacgat tagtttcata       360
     atattgcttt gtgaaaatgc cacgtggtgt tccggaagaa caccggaaat ttgcttaaaa       420
     aacgcactgg tattagtttg cagctagaaa tgctgtaagg tgttctggaa gaatactgga       480
     aaaatgtatt agtttggaat tatatgcatg gtattcgttt gtggcaaagg acgccacgag       540
     gtgttctgga agaataccgg aatatgattt taagacactt gaagtttgct tattgggtat       600
     ctgaaaccta ggtgttctag aagaataccg gagaattacg ttattcggaa cggtcatttc       660
     catggaattg cttcgcggta agcacacgag gtgttctaga agaacaccgg atttttgctt       720
     gcacacgcat aaaatgcaca agtactggtt tgcagctagc aatactgcaa ggtgttctag       780
     aagaataccg gaaaatgttg tcctttagaa ggttatgtat aatacttgct tgtgacagat       840
     ggagctacaa ggtgttctgg aaggataacg aaacattgca ttctgacatt taaatgtaat       900
     tattgtgttg tagatatctt ttctaaatgg tgttctagaa gaattccgaa aagaagttgt       960
     tcgaaacagc ttaatgtgca tgagatgatt cgtaacaaag acacaaacaa aaggcgccct      1020
     agtaggactc cggaatattg attgtgagca cttcgagtga gtttatgcga aataatggtt      1080
     taatactgtt cgataaatac actttcaact taattatcgg ttcagcggta aacgatatta      1140
     cattacgttc ctaaattttt aacattggtg tatttaaact ttggacagaa agtcacgatt      1200
     agaacttgat ccaaagtgcc aacgtgcgtg tttcgagtta acctttgtta ataaaaataa      1260
     cgaaaagact cagaaaatgt ttaagaatgc tcgatatagc tcaatactca aagttcaaga      1320
     tattaagttc taaaatgtac attcagataa ccaagcgaat ctaggttgaa gtttgtacta      1380
     attgactggt ttctctccgt ttgttaacag agtacaacat gtataacggt ggaaaatatg      1440
     ttttggctcc gactgccaac gacggctcgg atgtaagtga gtgcctgagt gataacaact      1500
     caatttgctc cgccgatctg gaggtggccg cccatgagac tgtcgaaacg gatgaacccg      1560
     cactgttgga agccgatgat ttccataaga gactgcgcta tctggaggaa acgatgggag      1620
     gaattatgaa gaaacgttct tctggaacta atccgacaac agaaacagct aacgagtccg      1680
     agaaatgtga cgatgagccc aactcacatt caagaccatc gaatagagga gggaacattc      1740
     ggtgggatct gatcccgaag ttcccaaacg acattccgtc gagcaagctt tgggagaatt      1800
     ggcacggatt tatcaagaat tttgagatcg ctacttcgct gtccacgttt gttggttcaa      1860
     gtgaccgcgc aaaattactt tatttgtccc tgggtaagaa cctacaagat attatcagcg      1920
     ctgcgaatat acaaccagat taccgagacc cgaagtgtta tgcgtctttc gtttcgaaag      1980
     tgaacgatta cttcaagtcg atggttgata cggccgcggc gcacgaagcg ttccaagcaa      2040
     tgatgcaaga gcagggcgaa tctatcgtca cgttccacgc aaagcttacg caaatggctc      2100
     gggtatgtga atacagcccc actgatgaag ttcgctatgt gctcgcccaa ctcctcaaag      2160
     ggatgcgaaa tcaggagtta gcattagctg ccaggaccta tggacacgac gctgattgca      2220
     tcgtgaaagc agctacaagg gtcgaagcat acgatgctgg caaacaaact agggagaaca      2280
     acccacgaca agtcctagca gttaccagaa agcgagaacc cagccgtgaa agggaaccat      2340
     ttcacaagat gcgcaagttg aacgagagca aacgtttcga aaaaccacag atgaaagggg      2400
     ttccccaagg ttaccggcag ggacagcgca ctcgttgttg gagatgtggt taccaatccc      2460
     ataaaaggaa cacgtgcccg gccttggata aaacgtgtaa cgtttgcggt cgagtaggcc      2520
     acttcgccgc aacatgtcgc agcaaaatca aaactaccgt caaccgagta gatgagaaac      2580
     cccggaacca ctcgcacgag tctccctcat caggatgggc aaaggagctg aacgacgatc      2640
     aggtataaat caggcgcaaa actaattatt actagcaaaa ataaagctca tttctatcag      2700
     taaacaattt ttcgattcag tacgtttatg ccacagtcta gtctgcctca ttaagaaaga      2760
     gaatacggtg cttcatgcaa aattccgttt tccttatatg gtattgtctt cttatttttt      2820
     ttttttgttt tagcaaataa atccaggggt atctataagc gacgcaatta ttcgttgccg      2880
     tcttggttcg tctagcccat atgattttct tgttgattca ggcgctgatg tcaatatagt      2940
     gggcggaaac gattggctct atctggaaaa ggaatttcgt gtaggaatgg ccaaactaga      3000
     gccaattgtc gtggttaatg aattacgagc atacgctgcg gaaactccta tggtaatacg      3060
     gtgtgctttc agagcagaga ttgaagtagt agatgcaacc aaaccagtag tgacggcgga      3120
     tttccttgtt gtggacgaag gacgtcgatc cctgctcggt cgacgtacgg ccagcgagtt      3180
     gaaacttctg aaggtgggac tctcagtgaa tagctgcgaa caatatactg gcgagaaagt      3240
     tttcccaaaa gtgccaggag taagagttaa gttcagcgta gacgcatcga taccccctga      3300
     aagaaacgcg tattacaatg tcccagcggc gttccgtgag gcagccagga agcgccttga      3360
     agacatggaa gcatctggta ttatcgagcg tgtaacgaag gcaccagaat ggataagcgg      3420
     catgtctgcg gtgccaaaag gtcagaacga ttttcggcta gtggtcaaca tgcgcgcacc      3480
     gaacaaggcg ataaaaaggg agtactttcg tatgccacta atagatgaga tgaaagtaaa      3540
     gcttcatggg gctaagtttt tcacaaagct ggacctaagc aacgcatact atcatctcga      3600
     actcagcaaa gaatcacggg atttaacgac atttctggca gagaatggta tgtaccgttt      3660
     tacgcgcctt atgttcggtg tcaactgcgc accagaaatt ttccaaagag aaatgtgtcg      3720
     tttgctggat gggatcgaaa atctcatcgt ctatattgac gatgttctga tattcgcaaa      3780
     cacgctggac gaactcagag aaactaccag ccatgtactg aaaatacttc gcgcgaacaa      3840
     cctgacgctc aacgtggata agtgcgaata cgacaagagc tttatcgtat ttctcggaca      3900
     tggactggat gagaaaggat ttcacgtgga cgaggcaaaa gtgaaggcta tccgacaatt      3960
     ccgaccacct tccaacgttt cagagctcaa aagttttctg ggtttggcat cctatatcag      4020
     tccatacatc aaaaattttg cagatatctc tagtgtactt tgggccacaa ccactgacaa      4080
     aaactggagc tggggggcta atcagcttgc tgcattcgag gcagttaagg atcaaataac      4140
     acgatgcacg acgactctag gatacttcaa tgaaaacgaa aaaacggtgc tatacacgga      4200
     tgcgtcaccc aatgccctcg gggcagttct ggtacaggaa agtccgtcta agcctgctcg      4260
     tattataagt ttcgcctcaa aagcactcac tgatacagag aagagatacg cgcagaatca      4320
     acgcgaggct ctggccaccg tgtgggcggt ggagcatttt tctttctttc ttctgggccg      4380
     gcatttcact ttgcgaaccg acgcgcaagg cgttactttc atattgaatc gatcacgaga      4440
     aaattcaaag agagctctta caagagctga tggatgggcg ctccgcctca gtccttatag      4500
     ctacaacgta gaatacattc gaggtagaga caacatcgcc gacccatcct cgcgattgta      4560
     cacaggtaac gatgacccgt ttgacgagca gcatagccct tgggaaatag cggccctgga      4620
     agcgaattcc gtaggttttc taacgctaaa agagcttcga gaagaaactg cattagatac      4680
     aactcttcaa aaagtaatgg atgctctaga aacaaatatc tggcccaagg aactggtacg      4740
     gtttggaagt gtagcaagcg aattgacagt tgacgaaggt gttttgataa gaaatggacg      4800
     cgctgtagtt cccaaaaacc ttcgggagaa gaccttgacc ctagcccatg atggacaccc      4860
     gatggctgca aaacttaaga gcatccttcg cgagcgtgtt tggtggcccg gattatcaac      4920
     ggatgctgaa gagtgggtta aaacatgtca aacttgcgca atgaatggga gaccggaaaa      4980
     acctactccc atgaaaagaa ttctagctcc tcaaacggtc tgggaaacca ttgcgttaga      5040
     ttttaatggt ccgtatgcca gattcggtgg tatttcgatt ttactgatcg tcgattatcg      5100
     gtctaggtaa gcattatact gatttttgat taatctctga tttgtaccat acttctttcg      5160
     tgataggttc ttgatagcca gaccagtaaa gtcgacgagc ttcgagcata cgaaacttgt      5220
     tctggaagaa atctttgcgc gtgaggggtt cccgaaaaat atccgctctg acaatggacc      5280
     accgtttagt ggtgaggaat atcgatcgta ttgcgccgat cgtgggatcg agaccacttt      5340
     ttcaactccg ttattccccc agcagaacgg actcgttgaa aactacatga agcttgtaaa      5400
     taaagcaatg tcttcagcag ttagcaacgg atcttgtttc aaggaagaac tacaggctgc      5460
     cataaacgcc cataacgctt ccgcccactc ggtgacaggt gtcccgccgg aggaagtaat      5520
     gatgggccgc aaaatacaac gcaggcttcc tttgttgtat ccagaaacag tgaaacatga      5580
     cgaggatctt ctgaatcgca gagacaaaga tcataaactg aaggcgaagg cccgcgaaga      5640
     tgccagaaga ggggcgcgaa aatgtcggct aggcccagga gacacggtta taatcgaacg      5700
     gcagaatcgt atgaaaggtg atagcagatt tgaccctcag agatacacaa tctttgagga      5760
     aaataacggg agccttactc tccataatga taatggtcaa atcgtaaaac gacatgtgac      5820
     acaagtaaaa aaagtgggaa cctggcgcat tcccagcgat aaaactaacg atgtcaaccg      5880
     tccaaatggg agcgacaggg aaatcacagg agcggaacca tctggaagac cacgcagaac      5940
     aaaacagacg ccctttttca tgaaggatta cgtgcgggca cttggcgatt gacacacctc      6000
     atggatggaa acctttttta tcctctcatt gcatttcatt ttgactgctt ttgttgttgt      6060
     taccttaaag agaaatagaa acagattatc ttaaattgta tcgttattta ccttgattaa      6120
     tctcctcaca acttcctcac agctctttgc tttgagcatt acgcacgtat acaaacgact      6180
     ttttgtttgc aagtctttag agaaaaggaa tggagcaaac agtactgtta cttcagatgg      6240
     caaaagaaaa ttgtttgtaa ctgtaaacaa gactaccgtt tgattgaagg tttttgacag      6300
     atagcaatgt cgacagaaac accgtagcga actgaaatca cacagggcca attgtatgtc      6360
     gacatgtcga cttgtaatca aaaacaaaat agcgtaacat ttcaaaacac ccaatcacat      6420
     attataccag ctgaacaagt tgatagtttt tattttcact tttattaaaa agttttttta      6480
     ttagaagaga gctaacttct tttaaagttt ggtgtagggg ggggatg                    6527
//
ID   Gypsy-504_AA-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 25.10, Created)
DT   22-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-504_;
KW   Gypsy-504_AA-I; Gypsy-504_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-252
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-252
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3129-3129 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 252 BP; 70 A; 72 C; 57 G; 53 T; 0 other;
     tgtgtggtac caatatccct aatatagaaa ccttggtaat ttgctataaa acccgatcat        60
     ctatttcggt cggcagcccg attaccgcca agtactcggc tgccgaacga cgagaagcga       120
     cgagagcttg ttcccgatag gagtcgtcct ctttctccta caaccgtcaa cgcgagcaga       180
     cgcatcagta agtagctctc caacggcaca gcggacgcac cacaatggct gatgacaagc       240
     caaagctgta ca                                                           252
//
ID   Gypsy-505_AA-I repbase;    DNA;    INV; 4540 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-505_;
KW   Gypsy-505_AA-I; Gypsy-505_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4540
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4540
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4540 BP; 1249 A; 1020 C; 1095 G; 1176 T; 0 other;
     tggtgtcaga agctagcgtg tgcttctgaa tgtttccggc gtcatagttg aaatcgcgga        60
     agtttcgaac gaagaaatcc ggttcgtgtt tgctcgtacg tcgcagcagc gtcagttttg       120
     tcgaaagtcg gttcgtgttc gatcgtgagt cgcaacggcg gccattttga aaattggtac       180
     actggtcgga agtcttcgtt aaaatggatc cgaatcagtt taaaatgttc atggaacatc       240
     aagctcagat gtttcatact cttgtgcagt ccataaacac cccgagagca gtcgatccag       300
     ctcaaaccac ccagcaacca tgtgcatccg gagtacctgt gccattgcct tcccctctgg       360
     ctttggaggg cgacatggcc gagaatttcg acttcttcga gaagagctgg atggaatacg       420
     caagtgctat tggaatgaat caatggccgg ctacggacaa ttctaaaaaa gtcagcttcc       480
     ttttgtccgt catcggtgag ccagatcgca aaaagttttt caatttcgag ctcactgctc       540
     agcaaaaagt aaatccggaa gagaccttga aagcaatcaa ggcaatcgtc gttcccaaac       600
     ggaatgtgaa tgtggatcgt ttggattttt ttggtgccat gcaaatgcca ggagaaacga       660
     ctgatgattt ttgctcccgg ttgaagacac tagcccgcct tgccaagctt ggcaacctgg       720
     ctacggaact aacaactttt aagttggtta cctctaataa gtggccacat atgcgtacaa       780
     agctgttgac tatgccggaa attactttgg ataaggccat cgatctgtgc agagccgaag       840
     aaattgcttc gtcaagagca gctgaactcg gcgttccggt gaaacagtca gaagtcaata       900
     aaatccggaa gacaaaagga gattccagag ccggttcgtc cagatgcaag ttttgtggcg       960
     atcggcatga atttgttaaa ggtgtatgtc ctgctttcgg aaagcgatgc caccggtgtc      1020
     atggaaaaaa ccatttcgaa aaagtgtgca aagccagtgg taaatccaag agccgaaagt      1080
     tcaagcatgt gaaagaggtg aaagaaagtg actctgatgg atcggaatcc gacttcgata      1140
     gtgatacgtc gtcgcaaagt gatgtggaat acgaaatcgg aaaggtgttt gacaattcca      1200
     gtggtggcgg cagtgtgtta gccgaactag atttgaaatt cgccaaacag tggaatacag      1260
     tgctttgtga actcgacacg ggtgctaaca cgagcctcat tggtcacgat tatctcgtta      1320
     agctctgcgg cgaatgcaat ccagctttgc taccgacgaa gtttcgtctt caaagtttcg      1380
     gtggcaatcc aatcattgtg cttggtcaag tcaaagttcc ctgtcgccgt ctcgatcgga      1440
     aataccgcct ggtgttacag gttgtggaag gagatcatcg tccgctttta tctgctaaag      1500
     catctcgtga gctcggattc gtaaagttct gccaaacagt gtcattcgta gaaccgcaag      1560
     tgaattcacc agacaagtta ttcagcatct accgtatcaa ggctcagaag atagttgacg      1620
     agcataaggg acttttttcc ggatatggga tgctaccggg cgttgtcaca ctggaagtag      1680
     ataaatcgat aactccgtct atccagtctc cccgacgagt tcccatagca gttcgtggaa      1740
     tgctgaaacg agaattggaa tcccttgagc gggatggaat catcgtcaaa gaaactcagc      1800
     atacggaatg ggtgagtaat ctggtgattg tgcaacgtgg tgggccagaa tcaggagttc      1860
     gtatttgcct tgatccagta ccattgaata aagcattgaa gcgacccaat ttgcaattcg      1920
     tcacgctgga tgaaatcctt ccagaattgg gtaaagcaaa ggtattctcc tctgtcgatg      1980
     ctaggaaggg tttctggcat gtggtcctcg acgagcctag cagcaagtta acaacttttt      2040
     ggaccccatt tggtcgatat cgttggactc gccttccatt tggtatcgcg ccagcccctg      2100
     agatttttca aataaagctc caagaagtta tccaagggct aaaaggggtt gaatgcattg      2160
     ccgacgatct tttgattttc ggtgtaggtg acacccttga ggaagcgctc attaatcaca      2220
     acgagtcttt ggaaaatctt ctttgccgtc tggaacacca caacgtgaag ctgaatggat      2280
     caaaattgaa gctatgtgaa cggtccgtca agttctatgg gcatgtgctc acggacgaag      2340
     gtttgaaacc ggatgaagac aaggtggttg ctattcgcag ttatccaaca ccagtcaacc      2400
     gcaaggaggt ccatcgattt attggcatgg tgaactagct tagtcgtttt attcggaatc      2460
     tcagcaccaa catgaacaac ctgcgaaggc taatttcgga gtccgttccc tggcagtgga      2520
     catcgcagga gaaaatggag ttcgaaaaag tcaaatcgat ggtggctgat attaacactc      2580
     ttcgttacta tgacgtcaaa gagccggtga tgattgaatg tgatgctagc agcaccggcc      2640
     tgggagtagc aatattccaa caggatggag tcatcggcta tgcgtcaaga acgctgacat      2700
     cgacggagag gaattatgct caaatcgaga aagagcttct ggccattctc ttcgcttgca      2760
     tacgtttcga ccagctaatt gtagggaatc ccaaggcaac aattaggacg gatcataagc      2820
     cgcttattac gatttttcga aaaccactac tgtcagctcc tcgtcggttg cagcatatgc      2880
     tgctgaatct tcagcggtat aatctttcag tggtgttcgt gacgggtaag gaaaacgtgg      2940
     tggccgatgc gctatcgcgt gcgtgtcttc cagcagtgca gtctgaaaat tacaagaaac      3000
     agaacattta caaagtgcta aaagatgtgg aagatgtgaa attaagtgca ttcttgcgag      3060
     tttcggacag tagaataagt gaagttatcg aacaaacaga aagagacccc tctatgcaat      3120
     tgctgatgaa gtacattcaa catggttggc cagattccgc tgaccgtatt cccgacagtg      3180
     caaaaatgta tttctgttat cgcaatgaac tctcaagtca agacggtctg attttttcgc      3240
     aatgaccgta tactagtgcc acatgttctt cgccgaagct tagttgaaag ctgccatgca      3300
     agccacaacg ggatagaggc gacgttgaaa ttagcacgag cgaatctctt ctggcccgga      3360
     atgaactccc aaattaaaga tgtcgtcaag cagtgtggca tttgtgcaaa gttcgcagca      3420
     tcccagtcga atccaccaat gcaaagccac gaaattccgg tttatccatt ccaactcgtt      3480
     tcgatggatg tgttcttcgc tgaatatcga ggtgccagac gaaacttcct tattacggtg      3540
     gatcactact ccgatttctt cgaattggac atcctcaagg atttgacttc ggaatccgtt      3600
     atcatcgctt gtaaaggaaa ctttgctcga catggtattc ctcagcgcgt tgtttgtgac      3660
     aacggcacta atttcgtcaa ccagaagatg acaaagtttg catctgagtg ggacttcgag      3720
     ctggtaacat ccgcgccgta tcatcagcaa gccaacggta aagcagaggc cgctgttaaa      3780
     atagccaaac atctattgaa gaaggcggaa gaaagtggct cggattattg gtacgcctta      3840
     ttgcactggc gtaatattcc gaacaaaatt ggttcgagtc cagttgctcg tctcttctct      3900
     cgttctactc gatgtggtgt gccagcagca gttgatcgcc tttgtcctgc cgtggttgaa      3960
     gatgttcata ctgcaattga agcaaatcgt aagaaggcta aattctacta cgacaagaaa      4020
     gcaaaacagt tacctgattt acaagttggg tcaccagttc atgttcagtt gagacccgac      4080
     acatccaagt tctggacacc cggaatcgtt tctagtcgcc taaacgatcg ctcctacgta      4140
     gtgaatgtgg atggtgtgga ctaccgccga tcactagttc acctcaagcc acgtaaagat      4200
     cccgaaacgc tgcctatccg ctctgttcct cctgctccag ttccagccca agaaggtcca      4260
     aatcctgcta ctacgatgac gatggatttt gcttccaatc cgacagctga aattattcct      4320
     gctactcagc tgcgcaacac aaacaacaac acgaatgaat cgatgcctac tttgttgaca      4380
     caagccgcgg ttacacccgt tgcaccaccc acttcaaatt caaatcggtc tcgtcccatt      4440
     acaccgacac cgaatagccg accaaaaagg aatattcgcg ttccagctaa atttaatgat      4500
     tttcagttag atttgtgaac tttttataga aaggggaaga                            4540
//
ID   Gypsy-505_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-505_;
KW   Gypsy-505_AA-I; Gypsy-505_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3130-3130 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 201 BP; 68 A; 44 C; 25 G; 61 T; 3 other;
     tgttctatat tgcatcgacg caccccttgt ttattataac acatttcata ctacctttgt        60
     ataacactac caacacatac acacacatca tgtcstagcg ccattacagt tttagagcta       120
     gcgcggtaca catcgctaag tacagtttgk taataaacgt tgaaaatata aaatccgtgt       180
     ttaatwtcga ataataaaac a                                                 201
//
ID   Gypsy-506_AA-I repbase;    DNA;    INV; 5536 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-506_;
KW   Gypsy-506_AA-I; Gypsy-506_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5536
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5536
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3108-3108 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5536 BP; 1760 A; 924 C; 1308 G; 1515 T; 29 other;
     ttttggcgac gatcggaaaa aaaaattgaa gaaaagttaa ttgtggattg akattatatc        60
     gtagcgattt cgtacttaaa agttgaatta gagtattgct gaaaaactgt gcctagtgaa       120
     taaagktagg agttcgtcaa gcgttgtttc tggaaattgt atttggaagt gagaacagta       180
     aagtgagtat ttgtcgttgk aaatggatgg aagaagctag tttggacaaa ttcaataaaa       240
     atgaggtaag cgaaatgata ttatttgcta acgcctgtaa gaaagtattc ttttaaggtt       300
     cgagattttt ctcgactgaa aaaaaawwtt tgcttgagat tctcacacgc ttgctcacac       360
     attcgttacc atggcaactc tgtwcggtag caacgaagaa ggtagcactc aaattatttt       420
     cactgggttc gatgaaactg acattctaac atgagaakgc agttggcagt tctaagttka       480
     gaattggttg tgaagtaaac aatctatact aggcaagtta ttgttattgt ctgaaattwa       540
     taacagataa gaaaagtgtc caaaattaag attgagtaat taattaaatg agtggcaagt       600
     aagwgtttac ggaagagcag gaacaataat ggagaacatc gtgtgtgcgt gtgtgtgtgt       660
     ggaaatagtg gcttaacact acacggagag gcaactgtgt gccaataagg acagaaacct       720
     tatgtttatt ttgacggcaa ctgtgtgcca atggaaaaag tagttttgta ctttacggga       780
     aggcaactgt gtgccaataa tgtttatttt gacggcawct ttgtggtagt ggaaacaata       840
     atttcacact gtacggaaag gcaactgtgt gccaatgtga atcaagtgta tgatgctatt       900
     gacggcaact gtgtgccaaa agacggtaat tttgagtggg caactgtgtg ccagcgataa       960
     gctagaaaca agtgtgggtt gtttgtgtgc caaaggaagt gctacatttg aggaagattg      1020
     gaaaaatcgg tggcaaattt gaagagaaaa ctgatgggta agtaaaaggg aaataattgc      1080
     aatatatgaa ttttaaaaga acggaaagat atgtttttac ttacacacct ttttattgag      1140
     acaaatgata agaaaatatt ctcattggga atacttaatg ttatataacg tgtgtataca      1200
     atcaacgtgt gagaatttca agtgaagtga ctktattcaa tgcawatcta atgcgaaaat      1260
     tacggaaaat aaatgaattg aactacttaa tgttatwtaa aacagtagtt atttggcgaw      1320
     gctgattcca tccatttgct aatttcgtta aagtggatca gattaattat ttggaaatta      1380
     attwttcatc caggatggat acgatgcagc gcattcgacc gtttaatttc gttgcggata      1440
     ggtcacagtt acctacagct tggcaaaagt ggaagcgtga gttggagaga tattttgatg      1500
     caagcggaat agtctcgcaa tgggagaagm gatctcaaat gctacatttg gccggttcag      1560
     aggttcagga agtgtttgat catttgcctg gtgttgatga attccctctt gtcttggccg      1620
     acccaccgta ttatgatgtt gcgattcggc gcctcgatga gcacttcgag ccgatgcgtc      1680
     ggaagaacta tgagcgtcat ttgttccgcc agatagttca aaagtccgat gaaagatttg      1740
     ctgatttcat tttgcgatta cgtattcaag caaaacgatg tgagtttgat cgttatgatg      1800
     ctcgagaggg tgatgaaaga atcatcgagc aagtcgtaga agggtgtaaa tcgtcggagt      1860
     tgcgacgaca gatcttggtg aaggatatgt ctttggagga gatagtgaca ctcggatcta      1920
     ctttggctga cgtacaacag caggtgaaag aaattgatcg ggctcctgct atgtttgaat      1980
     cggtagggat taatggaaat ttagttacct gttgagagaa taactcttaa aaattaaatt      2040
     tttttagcca aatttgaaca aggtttcatc gcgtatggta acaacgaatt ttactccaag      2100
     aaataatcgt ttggagaaag atttcggtag atcagctcga ggaaccattg gatcctgctt      2160
     tgcatgtggt ctgaaaggtc actggaaagg agacgttggc tgtcgagcaa ggaacgcgaa      2220
     gtgtgttaaa tgcaaaggaa taggtcactt tgccaatcgg tgtttgaagc gtccgaacag      2280
     tagccaggtt gactataagc ccaagagagt cagaatgctc gaggaagata agtccgatca      2340
     aaccacggag gaaattttct atgcgatggg gaaaaatacg tttgagtttg tagtaggtgg      2400
     tgtgaaaatt cctatgatca ttgactctgg ggccgatgca aatgttatca cggaagacac      2460
     atggagacag gtgaatcgcg atggccttaa gatattggca tacacacagt cagtcgatcg      2520
     taggttagtt gcttatgcta cwaataagcc aatggagatt acgggaatgt ttcgagcgta      2580
     tattcgtgcc ggtgaaaatc aagttgakgc taagttctac attgtaaaga aagggcagcg      2640
     caatcttctc ggtgataaaa cggcaaaaca gttggaggtt ttaaaggtcg gatttgacat      2700
     cgcatcggtg gctgctcctg agtcaacaca ctttccgaaa atcaaaggaa tcgtcgttga      2760
     gattcctatt gatgaatctg ttcaaccggc acagcaagga tacagacgag ctccgattgc      2820
     tttagaggga aagatacacg ataaactcaa atcattactg gacaaggaca taattgaaaa      2880
     ggtgcacggt ccatcggcgt gggtttcccc gatggttsca attttgaaag gatccggcga      2940
     agtaagaatc tgcgtggata tgagacgggc taatcaagcg gttcttcgcg aatcacatcc      3000
     gttgccgttg attgaagaaa ttttggggag tcttggaggt gccacaaggt tttcgaaact      3060
     agacatcaaa gaagcgtatc atcaacttga attgtcagaa aagtcacgag ggattacaac      3120
     tttcattaca aagtatggcc tgttcaggta aatgtttctt gtacttaaga ttgttggatg      3180
     tagawtttaa aaatataaac agttgaactc attttgttat tatatttcca taacttttta      3240
     gatacaagag acttatgttc ggaatttgtt gtgctcctga actttttcaa aaagtaatgg      3300
     acacgattgt cgcaggctta gaaggtgtaa tagtctacct wgacgacatt ttggtttttg      3360
     gttcctcgca aaaagaacac gatgcacgcc tagaagcttt gatgaaccgt ttaagagagt      3420
     atggggttct tttgaacttg gagaagtgtt tatttagcgt tgatcatttg gaatttcttg      3480
     gccatgaact atcacctgca gggataaagc caatgaaaag tcgtgtgctg gcaattcaac      3540
     agtttcgaga accaacaaat gcagcagaac tgagaagttt tcttggtcta gtcacktatg      3600
     tgggtcgatt cattcctcac ttagcgacaa aatctgaacc actcagatct ttactaagaa      3660
     ccggtaataa atttgtatgg gaagatcaac aaaaactggc atttgaagag ataaagcaat      3720
     ctatctgtga cataagccat ctcggatttt ttgatgtacg agacaaaacc attttgattg      3780
     cagatgcaag ccctacagga cttggcgcaa ttttactgca agaagatgtc aaaggcatga      3840
     gacgaataat tgcttatgca agcaaatcgt taacagattt agaaaggaaa tattttcaaa      3900
     ccgaaaaaga ggcgcttgcg ttggtttggg cagtcgatcg cttcaaatta tacctccaag      3960
     gaacccgttt caaactgatc actgattgca agccgttaca gtttttgttt agccctagat      4020
     ccaaaccatg tgcacgtcta gaacgttggg ttctgaaact acaatcgtat agctatgatg      4080
     tgttgcacga gccaggaaac accaatttag ctgactcgct gtcccggttg tcacaggcag      4140
     accataatcc gtttgatagc gcaaatgaaa gttatgtcca gttagtcaca aaaatgtcct      4200
     ccccgcttgc cgtcaacatt gaagatatca gagtattatc agcagaagat gaaacaatgc      4260
     gtgaggttag agaagctctg aacggaaatt tttggtcaga acgtgctaaa ttattcaagc      4320
     cgtactcctc ggaaatttgc gagtcggaag gagtgttact tcggggagag agaatcgtta      4380
     ttccacatgt tctacagggt cgagttttgg aactagccca tgaaggacac ccaggtattg      4440
     ttgtaatgaa acggcgactg cgtcaaaaag tttggtggcc aaacatggac aaagaggttg      4500
     agcgttttgt caagagctgt aaggaatgca cattagtatc atctgtttca gcaccggaac      4560
     cattagttcg gacacaaatg ccagacaagc cctgggctca tatcgctgtt gattttatgg      4620
     gaccgcttcc gtccggccat aacctgttag tccttgtgga ttatttcagt cgatttattg      4680
     aagttattat aatgagagaa attacggcga aactaacgat tcaggcgctc catgaaacwt      4740
     tctgtcgata cggaatacca gagactatga aaacagacaa tggtccacaa tttgttagtg      4800
     aagctatggt cgagtttagc agagaatttg gaattgatct catcaaaacw tctccatatt      4860
     ggcctcaagc taatggagaa gtcgagagag caaacagggc acttaagaag cggcttcaga      4920
     taagtcaaga aacsttgaac agtgattgga agtgggattt acgaatgtac cttttaatgt      4980
     acaattccac accacactcg acaacgggag tggcaccatc agcattgatg tttggaaggg      5040
     tattaaggga caaactacct gcacttcctt cgttgacaaa cagattaatc gaagatatca      5100
     aagaccgtga tagagagaaa aagatgaagg aagctgagta cgcgaataaa cgtcgtcgtg      5160
     ctgaaccgag ccacatcaga gcaggagata cggtgattgc taaacgcaca atcaaggaca      5220
     ataaattatc tagcaacttc aaccctgaag agctagaagt tctctcaaga aaaggttccg      5280
     atgtaacatt aaggtcaaat gaaacaggaa gaatcttaca mcgaaatgtt tcacatctaa      5340
     aaccaatcat acccggagag tcaactaaat cgcaggaama acatactgaa cctcaagaam      5400
     aatcagcaat gtcgaagaca aaggaaacta ctgactcaag aagtgtacgg ccacaacgag      5460
     atcctagaag accagaatat ttgaatgatt atatttaagt tagatttaaa tcacaatatt      5520
     aatgaaaggg aggaaa                                                      5536
//
ID   Gypsy-506_AA-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-506_;
KW   Gypsy-506_AA-I; Gypsy-506_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-155
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-155
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3131-3131 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 155 BP; 40 A; 23 C; 37 G; 55 T; 0 other;
     tgtagtatcg gtgacgggta gtcgttacat gtgtatagag ggattacgat tattcaaatt        60
     gtttcaatca aagcagtcgg gaaaatatat tcggtctctt cttggattgt gattctggaa       120
     aacggttgtg ttttattcta ctctccgaca gtaca                                  155
//
ID   Gypsy-507_AA-I repbase;    DNA;    INV; 3932 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-507_;
KW   Gypsy-507_AA-I; Gypsy-507_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3932
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3932
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3932 BP; 1099 A; 914 C; 926 G; 993 T; 0 other;
     ttggtgaccc gcgacgctga aaacaaaacg taaacgaccg taggaaacaa ttagtgcagt        60
     gaaaaagctg attttcttgt tctcgaacat tggacgccat cttgaacgaa atgtcgtttg       120
     gaaatcagaa tcagcaaaac aatgctgtta ccgcggcggt ggcagtgaag cttccagact       180
     tctggaaggg cgaccctacg atgtggttcg cccaagcgga agcccagttt gcgcttgctg       240
     gggtagtaca agacgaaacg aaagtactac cacattatca gtaaaatgga tcaatccata       300
     atttcgcatg tgtccgactt ggtgcaaatc ctccgaagga agaaagtaca aaaaagtgaa       360
     ggagcggctg atttcgcggt ttgaagtttc tgcgcaagca aagttggagc agctgctgaa       420
     cgcctgtgat ttaggtgata tgcgccccac ccacttgcta gcgcgtatgc aggagcttgg       480
     atccgggttt gaacatcaac gaaagtgttt tgagagtttt atttgtgcaa cgaatgccag       540
     aacgagtcaa accgatactc tcaatttgtg aaggcaattc tctggatcag ttggcacaaa       600
     tggctgataa gatggttgaa atatcatctc catccgtcgc atccacttct actgtgtctg       660
     gattcggatt agatgacctt aaggagcaga tagcagcgct tacagccgaa gtacgtcggc       720
     taaaaacatc cggcgcgagg agccgatcgt catctagagt ccgacaaggt gcagctccag       780
     cggaaacaat ctgctggtat catcggaagt acggacgcaa cgctcaccaa tgccgtgagc       840
     catgtgccta caatgtccca aaaaactaag cagcagttca cctgaaacgg cgaaggtgga       900
     cggaatctgt gaaagtcgcc gtcttttgct ctatgatcgt tcaacttcct gtcgatatct       960
     gatcgacaca gggtcggatg tgtcgatcgt gccggcttca aagaaagacc ggaacaaggg      1020
     accctcatca ttccgcctac acgctgcaaa cggaaccgtc attaaaacat atgattcccg      1080
     ttatatcacc atggatcttt ggtctccgcc ggcagtttcg ctggaatttt gttgttgctg      1140
     atgtcggtgt gccaatcatt ggagcggatt tcctcgcgtt ctacggcctg ctcgtggatc      1200
     ttaaaaataa acgtctaatc gatgcgaaga ccaacttgaa atcaatgggt ggtctatcgg      1260
     cggctgaaat tcacactgtg acgacagtgg attcgaatca tccgttcagg gatttgttgt      1320
     tggaataccg cgagataacg ctcccgtcca ctatgcgatc tgctgtaaag gaaagagatg      1380
     tgaaacatca cattctaacc aagggccccc ctgtcgcatc gaaagctcgt agactggctc      1440
     cagacaagct tgacgccgcg aaaaaagaat tccagctcat gtccgactta ggtacctgtc      1500
     gtccatctgc tagcgcttgg gcaagtccgt tacactgcgt accgaaaaag aacggacaat      1560
     ggcgttttgt tggtgattac cgtgccctca ataaggtaac aatcccggat cgataccctg      1620
     ttccacatat acacgattta ctaaatgcat ttcagggtaa gagcatattt actacgatag      1680
     atctcgagag agcatatcat caaattccga ttcaggaaga ggacattccc aagaccgctg      1740
     tgatcacccc gtttggactc tttgagttcc ttactatgca aaatggatta tgtaacgcta      1800
     gccagacgtt tcagcgatac atgcatcgca tattcggcga tcttgaattc gtagtagttt      1860
     ttatcgacga catctgtatc gcatcttcaa acccaacaga acatcgagag cacgtcgaaa      1920
     tagtattcca acgccttaaa gagaatggac tcgttataaa cctagcaaaa tgtaagttcg      1980
     ctcagcgcca ggttgagttc ttgggatacc taattgataa ggacggaatt ctaccacttc      2040
     cagatcgagt acaagcggtg cgccagtacg agcttccaac gaacgtgaaa caacttcggc      2100
     ggtttttggc attggtcaac gtttacaaac gcttcatccc acaagcaact gaccaacaag      2160
     ccgagttacg tgcattgata cctggaaaca aaaggaatga tggtagaaag ttattgtgga      2220
     ccgaaggagg aaaacacgca ttcgaacttt gtaaaacgtc actagcagaa gctgcgttgc      2280
     tgagttatcc agatcccgaa aagccaatag ggttgatgat agatgcatcg aatactgcag      2340
     caggtgcagt gttacagcag ttcgttgatg gaggatggaa accccttgga ttctactccg      2400
     agaaattttc gtcatcacag caaaagtatt ccactttcgg cagagagttg actgcaatga      2460
     aaatgtccgt gagatatttc cgtcatctgt tggaaggcag aaaattcacg atcttcaccg      2520
     accacaaccc attgacgcac gcgatgactt cgaattcacc atcccggcta ccacatgaag      2580
     atcgacattt acagtatatc tcgcagttca ctcaagacat tcgccatatt agtggtaaag      2640
     ataatgtggt agcagataca ttgtctcgcg ttgatactat ttctattcct gctgcgattt      2700
     gtttcgaaga cattgcggct gatcagatcg gtgacagtga acttcaaagc ctgcttcaat      2760
     ccccttcttt gaaattcgaa aagcgatctg ttgcttctgg cggtcctgct ttgtattgcg      2820
     atacatccgt aaatggaaag cttcgtccat acgttccttc acagcaccgt caacgtgtcc      2880
     ttgaagttat gcatggcata tcacattctg gtgttcgggc aacccgtcgc cttgtagcgg      2940
     atcgtttcat ctggaattct atgaacaagg acgtcactga attcgtcaaa cattgcgtgg      3000
     attgtcaaca atcgaaaatt caacgacaca ccaagtctcc gatatgccga ttcgatcttc      3060
     caaaaagccg atttcagcac atacacatgg acctagtggg tccgcttccg ccttcaaatg      3120
     gttatcgata tctcttgaca atggttgatc gttacacgcg ctggccggaa gctgttccta      3180
     tttcggatat gacagccgaa actgttgcac gagccttcac tgctacatgg gttgcacgct      3240
     tcggagtccc tcagaaagta acgacagacc agggtcgaca atttgagtct gatctttttc      3300
     gagaattgaa ccatctgctg ggatccgagc atcttcgtac tactgcctat catccacagg      3360
     ctaatggctt ggtagaacga ttccacagga cgctaaaggc tgctttaatg tgtgttgatt      3420
     caaagcattg ggtagatcga ctaccaatgg ttttgctagg catccgagct gctcttaagg      3480
     aagatctgga ttgttcagta gcagagctcg tctatgggca gcagctccgt ataccaggtg      3540
     agttttttga tgccccgaag aaggagttgg accgcagtga atacgcaaaa gagcttcatc      3600
     gtgtctttga tgatttgaaa ccgaagaatc cgacacatca tgcaaaaacc aatatatttg      3660
     ttcaacgaca gctcaaggat tgccagtacg tatatgtacg aatcgatatg gtcaaaaaac      3720
     cgttgcagcg accgtatgaa ggaccataca aagtactgga tcgtaccgag aagttcttcg      3780
     atctgttgat aaagggtaag aagcaacgag ttacgatcga cagaatcaaa ccagcatttg      3840
     tagctcagga aggaacagta gatccacaga aaacagtagt taccccatct ggtcaccgca      3900
     tcagatttct ggtgtaactg gagggggctc tg                                    3932
//
ID   Gypsy-507_AA-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   23-APR-2019 (Rel. 25.10, Created)
DT   23-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-507_;
KW   Gypsy-507_AA-I; Gypsy-507_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-197
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-197
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3132-3132 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 197 BP; 54 A; 41 C; 41 G; 61 T; 0 other;
     tggtgtcgtg ccgaaactat tgatgcgccc ctcgacgagt agtttctgac acacacacat        60
     tcatggcata gcgaagagcc agttcattcg gaattgttgc tactgcgaag aatacaaaat       120
     aaagttcacg gtttattatt agtaattaat atcgcgtttt attcgtttta ttccgtccga       180
     cgaatgtagt gtccaca                                                      197
//
ID   Gypsy-508_AA-I repbase;    DNA;    INV; 4365 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-508_;
KW   Gypsy-508_AA-I; Gypsy-508_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4365
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4365
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4365 BP; 1573 A; 640 C; 863 G; 1289 T; 0 other;
     attcagaagt gggatcatga ttctacgcga tatcccaaga cgaagagctg atgttggaaa        60
     tttttcaaat aacgaaggcg aatcgaatga aaacacagaa tttagaaacc aagccagaaa       120
     catgaacgtt agtggagcag gagacggaac gcgatccgaa accagttcaa tggttgttgg       180
     agaacgcgga gatgtaacgg ctggtgttag aagcgacatg ggtcagaatg aagctagaaa       240
     caacactgga ttgcagcaga tcgacgggac gggaattcga accagccatc aaatgttctt       300
     acaccctgaa gacgttcgta gcctgattcc tgaatttgtt cctgggaaga ttactgtgga       360
     aaaatggttg agaaaagtcg acaatttgaa gaacgtttac aactgggaag atcggatggc       420
     tcttcactat gcaacaatgc ggttgggtac ggtacctaag atttggtttg aaggcgttga       480
     tgaagccgtg tgcggttgga atgatttcaa gcaaagaata gcgaaagcat ttccatcaag       540
     aatcgatgta gtggatatcc atagtgctct caacaggcgg atcaagcatg cagatgaaac       600
     ttacgaaaac tttgcgtatg acatcgtggc caaagcaaga atggtggacc ttacggatgg       660
     cgctataatc aaatacgtca tcaatggtat ttcgaactct caattaagac tggtgctgag       720
     tactgcagga cacacatccg tggatagttt gttggaagca attcttcgac atgaaaatca       780
     aacacaaatg caagcagata gaaatgcaaa tcttcaagaa catatgcggt caaatgatga       840
     taacagaagt tgttatagct gcggagaacg aggtcattta acaagaatgt gccctcggaa       900
     aggtggactg cgattccaag atggtagaaa taattatcga caaaacaatg atgcaagata       960
     caacttaact cactcaagta gcgatcagcg agtcaatggt ttcgatagac tccgttatcc      1020
     cgttggccgt ggcgaagaaa gatctggaca tcaacagttc tcaagaagtg gtgacaatcg      1080
     acaatcagag ggacgttact caaatgcaat ttctgcggta gaaggaacag atgcaatcca      1140
     aagaggagca gaagctgatt ttgagcgatc tcgaggtagt attgagtata gaggtaggag      1200
     taggttagaa aaatcatttt tcaaaacttt agtaagattt tcgaattttt ataaggagtg      1260
     tgtaacactt ttcgatacag gtagcccaat ttgtttaatt agaagtagcg ttgttcctag      1320
     ttcaattcaa atttcaaaat attctgataa aacgttttca ggcctaaata attctaaaat      1380
     tgatatttta gggacatttg attcagaagt tgtcattaat aattatattt acaaattaca      1440
     gttttaaaat cgtgagagat tctaccatgg aaccgatgtg cattttgggg acggacttca      1500
     ttagaaggaa taacttgtta gctgaatatg acggtgacgc gatagtgttt ggaaagaaga      1560
     atgaagaaca taggggagtt ttgaacgtgc ttgcaactga aaataatttt cgtccagata      1620
     tctttgatgt ggaggtaagc tcgggcactt tcttgaatac tgatgtggat caattagata      1680
     taggtgacgc tagaattcct tttaaatata ttacggacat caaatctctt tttaacaatg      1740
     tatatgaaaa cggaattaga ccaataaaac ctaaaaattt gtattctatg aaaattgaat      1800
     tgcaagtcaa taaaacattc aactttccac cgcgtcgttt atcaaattct cagaaattag      1860
     aagttgaatc tcaaatcaat aagcttttac aagaaggggt tatacaagaa agcaattcat      1920
     cttacgctag cagaatagta ttagtgaaga agaaagataa ctcatggagg atgtgtgtag      1980
     attataggga gttaattaaa attacggtta aagatagata tccaattcca catattgaag      2040
     atcatttaga tagcttacgc aataagaaat attttagcac tttagatctt aaaagtggtt      2100
     atcaccatct attaattgat gaaagctctc aaaaatatac agcatttgtg tgtcatttgg      2160
     gtcaatttga atataagaga gtaccttttg gcctatgtaa tgcaccttca gcatttatga      2220
     gatttattaa cacaattttc aaagatttga ttaaaagagg tgtgataaga atttacattg      2280
     atgacattat catagcaacc gaaacaattg aagagcattt aacagtgatt gaacaggttt      2340
     ttgaaatttt agttgaaaat catttacaat tacaattgac gaaatgtaaa tttttaaaat      2400
     gtaatgttga atatcttggt tacaatgtca attccgaagg aataagtcca agtgaaaaac      2460
     atgtagaatg tataaaaaac tttccgattc ctaagaatat tcatgacgtg cacaaattta      2520
     ttggattagc aagctatttt agaaaattta tttcaaactt ttcagtaatt gcaaagcctc      2580
     tttatgattt atttaaaaag gataaaaaag attttagctt aggaaaagag gaaatgattg      2640
     ctttcgaaat tcttcgtgag aaacttacag ctgaaccagt tttgaaaatt tattcgcctt      2700
     ttgctagaac tgagctacat actgatgcga gtgctctcgg atttggtggt gtcttaatgc      2760
     aagaacaatc agatggggtt ctacatccag taatgtatta tagtaagaga acagatttac      2820
     atgaatcaaa acttcactct tttgaacttg aaacattagc agtagtgaat agtataaaaa      2880
     ggttccacat ttatttacag ggcattaaat ttaccatagt tacagattgc attgcactaa      2940
     aagaaacctt aaataaaaag gacataaatg caaaaattgc tcgttgggaa cttttcttat      3000
     ctgaatacga ctatgacatc attcatcgta gctcttctaa tatgaagcat gtagatgctt      3060
     tatctcgttt gccgattatc tgtgctttag gaaatgaaaa taataacttt gaaagagctt      3120
     tattggctag ccagatgtta gattctagaa ttgaggaaac aagaattcag ttagaaaata      3180
     gagaagacaa aaattttgag ttacgagatg gagtagtgta taggaaaagc aaagatagta      3240
     aattattatt ctacgttcct caaaacatga taaaccaaat tttgaagatg tatcatgacg      3300
     actttggaca ttttggagtt gaaaaagttt acgatttaat caataaatct tattggtttc      3360
     cgaacatgaa agagcaaatt aaaaaatata ttaataactg tttgaaatgt atcatatatt      3420
     ccaagaaaaa ctttaaaaag gatggtaatt tgaatatagt tgaaaaagga agtacacctt      3480
     ttcatacgat acatattgat cattatggac cagtaactct taggaattgt aattacaaat      3540
     atatttttgt tatagtggac gcttttacaa aatatttaaa attatatcct tgtaaaacta      3600
     caaatacgag tgaagtaatt aaacatctaa aacattattt caatgcatat tctatacctg      3660
     aacaaattat ttcggatcgt ggcagttgtt tcatttccaa tagttttaaa gaatttaata      3720
     gcgaaaatga agtaaaacat attttgatag ctactgcatg tccaagagca aacggacagg      3780
     tagaacggtt taacaggata ttgactccag taatagctaa actggttgaa agcaatccta      3840
     caaaaggttt cagtccaatt ttgtcagatg cagaacattt tataaataat actttttgcc      3900
     gatcgatagg aaacactcct tcacaattac tgtttggagt taatcaaaag aaattgaata      3960
     ttaatatgat tgagaaaagc attaacgaaa acaaagacat tgaaagagat ttgatcaaag      4020
     taagagaaaa agctattgct ataaacaagg cactacaaat ttacaataaa aagaaatatg      4080
     attctgaatg tagaattaac acacagtatc aagtaggtga tctagtttat ataccacatc      4140
     atgctctacc cgggagttca tctaaattac aagcacagtt caaaggtcct tatattgtca      4200
     aaaaaacgct tcctaaaaat cgttatgttg tgagtgatat tgacggtatt cagctaacgc      4260
     gtttaccttt cacaggaatt ttcgatcctg ttaatatgaa gttatgggat atgaaaaatg      4320
     aattaaatgc acatcggggc gatgtggatg tcaggatggc cgagc                      4365
//
ID   Gypsy-508_AA-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-508_;
KW   Gypsy-508_AA-I; Gypsy-508_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-157
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-157
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3133-3133 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 157 BP; 54 A; 24 C; 31 G; 48 T; 0 other;
     tgtaggagat tgaagtaggc aatacaatca ttaggaaggt catagtaggc tttcaatagc        60
     aaaattagga tcatttcgat gtatgacagt cattaatcct cgagacgcca aataaataag       120
     atcgatttat cagaagctct ctgtattttg tacttca                                157
//
ID   Gypsy-509_AA-I repbase;    DNA;    INV; 7508 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-509_;
KW   Gypsy-509_AA-I; Gypsy-509_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7508
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7508
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 7508 BP; 2183 A; 1865 C; 2008 G; 1452 T; 0 other;
     actggcgccc aactgaaaat ccacaaaatt tagtactacc gttagcgatt tttttttggt        60
     ttgtaattta gcaattttgg ttttgtgctt aagattatca ggcctacgat aatctaattt       120
     taacccttac gcatattttc gatatggatt acacccattt gacagacgaa gaagtgactt       180
     acgagttggc tttacgccac gtagtcaacc tcggtacaca cagaggaaag gttcttcgtc       240
     tcaaggcact cgtacaggag gagaccttga gaaataccaa gcccactagc tcagaccatg       300
     ttatgagctc acaatctaac attgaacaat gtgaatctca aattcaccag ttgcacatta       360
     gcaccgaatc ggcccttcgc acagccgata gtgcagcttt aagtgtaatc cgaacgcgtc       420
     tcacccacta tcgcgaccgt ttgcagttga tcggtcctcc gcttgaactg caggagaaac       480
     acacgatgct aatcatgcac gtggatgtat tactgaacaa ggtgaatggt ataagtgtag       540
     tgaatggggt gcaacaaagg gaaagtgctg tgaatccacc acgattaaca ggcgctatcc       600
     ggcgaaactc cggggaagat gaaggagctg ttggaggcac agcagaggct acactgccgg       660
     tagacgatat caaccaggaa tcaacaccac cgccgctgtc acaaccacca ctgatggcat       720
     cgttctcggg cggacgagga agaggattgc tgttttcgag ctccttccaa gcacgtgagg       780
     acgaggacag aagacgaggc gagtcaaggt acatcaacac aacaccacca ccaccctacc       840
     ttccgcggga acaagaaagg tggaacttac ctgcgcggga gacagaaccg cgggaagttc       900
     gcatcttgga ggcacggatc agagaaatgc aaggcaggga ggaacggatg caagaggaat       960
     acatcagaat gcgggacgat ctcgagcgtt taattcaacg aggaagaccg gtacctgaac      1020
     gaaccgacga aaggaggatg cagaaggcgg tacacaactg gccgttcaag tttcgtggcg      1080
     agaaggatac cacttcactc aacgtcttcc tcgaccgggt gaagacgttc gcgagctcgg      1140
     aaggcatgag cgatgcgacg cttctcagtt ccatcaagca cttgctgcaa gaagacgcta      1200
     tcgactggta cgcccgtgca acttcgcagc gactgcttct tacatgggac gactttaagc      1260
     aacagattcg ccgagaattc ttgccaagcg gatactcgca gattctccgt ctagaaacct      1320
     gctttagatt ccaaggaagg gacgagtcgt ttgcgaagta ctaccgcgac atttcagcac      1380
     tctttcgctt cgtatatccg ccgatcccgg aggacgaaaa gttcttcctg gtgaagaaga      1440
     acatgaacga gagctacgcc tccatcgtaa cggcagcaag gccacgaacg ttggaagaga      1500
     tggtcgaagt ttgtaccgga tacgatgaaa cgaagatgct tctgaacaga cagcgcagaa      1560
     ttccgattcc gcacagtgcg ctactcgagc caaacttcgc gacgccagta acaaccaaca      1620
     gaccggcacc aattcagcaa cagcaaccac catatcgttt cagccgagtc cacgcagtgg      1680
     aagtggagga aaattctcca gaaggcgaag cagttgaagc actggaagat agctggcaac      1740
     actgcttcga cgacctcgtt gaacaagtca acgcactgaa aatgagcttg gagaagaaga      1800
     ccgcacggcc gagcttcgct atacgaaacg aaaggcaacc gagaattcca gatgtggtca      1860
     accgatccga ggaagaggtt cctcagcagt atcgtcagca gagcaggact acacaacaaa      1920
     ttcccacaca gcagtaccga ctgcaacctg ggccaaacca gcagcgtcag ccgtaccagc      1980
     agcagcagca gcagcagcgg gatccgcaga ggatgcaagg ctggcaagcg cgcagatgga      2040
     tgccgagctc ggtggaagag tggaccgaca gcaatcagcg taacaatctt ccgaagctgc      2100
     agcaagaacc agaaaggcag gttgaaaggc gttacgagga acggcaagaa acggcgaacc      2160
     atcagtgtct ggcgatggtc tgctggaact gcgatgagga aggtcacagg ttcatggatt      2220
     gtcccaaacc gcaagcaata cttttctgct atcggtgtgg acggaagggt tactcactac      2280
     gtagctgttt cacgtgtcgc accgacacgg gaaactaccc cgcagagaac cagctttaga      2340
     ggggagcggc tcttcgtcaa ctctcggaca cccctccgag aatccagaat tcaagaacct      2400
     tgactcaatc atcataaatc ccggaagcga caaccgaccg cacgccgtca tatcagtgct      2460
     aggaaaggag ctgaccgctt tgctggacag tggagcgaac tgctcgttgc tcggaggaaa      2520
     aagagcggga ctggcagagc aatgcggtct gcaaaaaaga atcgtcaagg gcggaataaa      2580
     aacggcggac ggcacgaagc atgaaatcac caatttcgtc tatcttccca tcgtgtacaa      2640
     caaccgcaac gaagtgcttc cagtactact ggtaccctcg atcccggatt gcatcatcct      2700
     gggaatgaac ttctgggaca agttcggagt aaaggcagtc tgttgcgcaa tggaagcaga      2760
     gcaggaacac gaaggcggcg aggaacagat gaagcaactg acgccggagc aaaagaagcg      2820
     gttggagcag gcaatccgga aatttccgag agctgtagag ggaacgctgg gtcgcacgaa      2880
     gttatacgag catcgcatcg acgtaggcaa cgcaccacct cgcaagcaac ggcattatcc      2940
     catgtcaccg tatgttctgc aggaggtgaa cagggagatc gaccgaatga tcgcactcga      3000
     tgtcatcgag gaggcacagt tctcgccgtg gaacaatcca ctagttgccg tgaagaagaa      3060
     gactgggcaa tatcgcgtct gcctggatgc ccgtcaccta aattccgtca tggtaaatga      3120
     tggctaccca attccgcaga tagcagcgat caccaacaac ctccgaagca gcaaatacat      3180
     ctcgtcgatc gatctcaaag atgctttctg gcaactaccg ctccatccag gatcgagacc      3240
     gctgacggcg ttcaccgttc catccagagg ccactttcaa ttcaaagtgg tgcctttcgg      3300
     actgtgtacg gccagccaag ctctagcgcg gctcatgacg cacctatttg ccgatctaga      3360
     gccgctggta ttccactacc tagatgacat aatcatctgc tcggagacct tcgaagagca      3420
     catcgccctg ctcgaagaag tagcccgccg gctacgacaa gcaaatctca cgatctcttc      3480
     ggagaagtcc atgttctgca ggaagagcat gaaatacctc ggctacgtga tcgatgaaca      3540
     aggttggcga gtagatgacg aaaagattca ggctatcgta cagttcccca ctccaactac      3600
     ccggaaagaa gtgcagcggt tcccaggtgt ctgcaactgg taccgacgct tcatcgcagg      3660
     gttctcgcag ttggcagcac cgctcacgaa cctaacatcg gacaagacga agttccgatg      3720
     gaatccaata gctgaagaag ctttcctcaa gctgaaagca gctctggtct ctgctccggt      3780
     gctagcaatg ccggactaca gcaaaccatt tgcgatagcg tgcgatgcca gcgacacagc      3840
     gatcggagca gtgctaacac aagagaccga cggtgaagaa catccgatcg gctacttctc      3900
     gcagaaattg tcagcgtcgg agaggaagta ctccgttacg gagcgggagt gtctcgctgt      3960
     gatccgagcg atcgaaaagt tcagagccta tgtggaagga atcaggttcg tcgtccattg      4020
     cgatcacgca gcgctcagct acttgaagtc aatgaagaac ccaacggcct tgatgagccg      4080
     atggctgttg cggctgaatg cgttcgattt cgagattcgg taccggaaag gttccatcaa      4140
     cgtggtaccg gatgccctgt cgagaacggt agcagaagca gtattcaccg tagaccaggt      4200
     gcaggacccg tggtacaaga agctggtgga gagagtgcag actgaaggcg agcggtttcc      4260
     agacttccga atcgcaaaca acaccttgtt caagaactgc cgctgcaagg acgaggtcgg      4320
     agcagtgttc cacaggtgga agcaggtggt acccaaggaa gaaaggttgc agctgatccg      4380
     gagattccac gacgaaccgg cgtccgcgca tttaggcctc tacaaaacat ggcacaagct      4440
     acaagcccac tactattggc cgcagatgca gcaggaaatc agcgattacg tgaggagctg      4500
     tccgacttgc aaagcgtgca aggcacctgg aacgaagatg atgccgcaaa tggggaatcc      4560
     caagccggcg aagatcccgt gggagatgat atcggtggac ttcgtcggtc cgctcactcg      4620
     ttccaagcgt gggaacacgg tattgctggt ggtagtagat tggatcagca aatacgtgat      4680
     cgtcaagcca atgcgcgcag cggattcaca gagaatggtg gaattcctgg aagaagaggt      4740
     gtgcctgaag ctctcacgtc cacggctgat attgtccgac aatgggaagc agttcgaatc      4800
     gatggtcttc aagtcctggc tggcgaagaa caagatcggc cacatgaaga cagctttcta      4860
     ctgcccacag gtcaacaacg cggagcgcgt taaccgcgtc gtagtcacct gcatccgagc      4920
     gttgctggac ggcgatcatc gagaatggga cgagaagcta ccggcaatca cggcagcgat      4980
     caacgcggcc aggcacgagg caacgggtgt gagtccgcac gaagcgaatt tcggatacag      5040
     aagctgatca tcgatcgcat caagaacagc caccagcggg cgaaacagcg atacaacctc      5100
     cgcacaagat cggtggcgtt caaagtcgga gatctggtat ggcgtcgcac gttcatccac      5160
     tcatcgaaag cggaccagat caacagcaag ctggagccga aattcgttcc ggcaatagtg      5220
     aaggagatcc tcgggacgaa cttgtacctg ctggaggacg tgatgagtgg gaagaaaagc      5280
     agattccatg cgaaggacat taaagcggtt taagcgtaag gtgtaaagct atgtacgcag      5340
     gcagtgcctg tcaaccaaga agcgaaagct gacaaaaaca ccaaatggga gcagtgacaa      5400
     cgagcagagg cgaccacagt atccacaatt ccgcttcgcc tcagctagac cgattaggag      5460
     atttctgtaa ggatttccgt tcacccgaac gaggttccga aaccatcaag ctatgtacac      5520
     aggcggtgcc tgttaaccat aattagtagc agtcggaaac accaatcacc gggatgtttg      5580
     accacgaatg ctgagagaga gaacttgcta caacaatgct ccacttcagc aatatcgagc      5640
     aagacgaaga caaggatttc cattcatccg agcgaggttc cacaatgcta aagctatgtc      5700
     cacaggtaca gcctgtcaac cattagtacc atacttcaaa acacgtacca agcgggaaaa      5760
     tggcaaaagt caggtgtgat gagcaacaac ttcttaacga ctacctctcc acctcgacga      5820
     ttcgtcagtt tcgttgtaga acacgatctt cgccaaaaga ttgaacacga tttgcgacca      5880
     cgtcaagcag agaagagaac caacatgcgg tacaaaaaca cttccatcgc gccaggaggt      5940
     gtaccgtgcg acgttcgcga aacgggagaa atcgcaccct acgtcactgg aaacggggag      6000
     tagggatctc ggcaatgcac cagatgcatt ctctgatagg aggagtggag acccggagat      6060
     cgacgaccaa aaatcggttc gacgcggagt tgaagcttac ggccactatc gggcgcagtg      6120
     agacagcagc tggagggcat tgagaggagg aggacgtaac tggagtctac gaagggcacg      6180
     ggagattgga accctgaaaa ccatcgtgag tagggaggct ccaaagacca tcacgaagaa      6240
     gcagaaaagc aagcagtcta cggaaggcac gggagattgg aaccctgaaa acagccgtga      6300
     gtagggaggc tccaaatacc agttcgaaga aacgcaatcg caagcagctt acggaaggca      6360
     cgggagattg gaaccctgaa aacagccgtg agtagggagg ctccaaatac cacttcgaag      6420
     aaacgcaaac gtaagcagcc tacggaaggc acgggagatt ggaaccctga aaacaatcgt      6480
     gagtaaggtg gctccaaata ccatcatgat gaagcggaag aacaagcagc ctacggaagg      6540
     cacgggagat tgggaccctg aaaaccattg tgagtaagga ggctccaaat accaccagat      6600
     agagcggaag aagcacgtag cctacgtcag gcatgggaga ctgggacccc gaagtccaca      6660
     atagggagac tccagacacc agaaagtgaa gcgcaccgta gaccgcgatc aaacgcaagc      6720
     aacatcatca agctatatcc gcagcgagct gccaaccaag tataggaaac cccacatcaa      6780
     aacacaccaa gtggtcatgc cgttcgccga acgagataaa tcgagcccac catcaagatt      6840
     cgaccaccca ctacactaca agactggata taagtgcaca caaaccctca agtgtttcca      6900
     gtcaattcaa atgcgtggcc aagggttaaa gatcgggggg tcgtcatgaa atcttcatcc      6960
     caaggtaacg cgaccagggg cgcggtaaaa ccccattttt gggctcatga cgatttagtc      7020
     gcggaaatgc tttttttctc agttttaagc acaaaccaaa caaaccaatt cagtccttgt      7080
     aaaattctgt aaatatagct tcttcgttta gtgtgcgatt cagcctattc tagtcaatac      7140
     aataggctag aatccgattt gaatgttttg ccgtagtttg agcgggtttg tggaagctgg      7200
     acaaggactt tggtcagaga cgatttgaga ggtcgaagat tctgccaggc gcagctggcg      7260
     tagtatcaag tctagaatta ggatatgatg tttagacgat agtggagatt tgatttggca      7320
     agcaaccagg gcttgcggat aggagtttag ttattgaaag aatcagaaat aacttgaggt      7380
     ctgctcaagg gtttagttga ccgacttgtc tctgaccatc atcctaggag gatgattgaa      7440
     gatttgtgaa tttttcataa atcgtttgat caccgattta tgaaaaattc ttccgctacg      7500
     gtagagtt                                                               7508
//
ID   Gypsy-509_AA-LTR repbase;    DNA;    INV; 1699 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-509_;
KW   Gypsy-509_AA-I; Gypsy-509_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1699
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1699
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3134-3134 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1699 BP; 494 A; 424 C; 448 G; 332 T; 1 other;
     tgttacgttt gagtttgata agttaagaat ctgtagcaat tcagaacaaa caacatcaag        60
     atagtattag gcacaaaaag aaaatcgttt cgctcagtgc agttttgatt cataccaacc       120
     gtcaaatcaa aacacccgta ccctccgttc atcaacgtga aatatttcgc aaagcgacgc       180
     ttcggattca acgcgaagca gaagaactgc gaaacgcaca cactcacagt cggactgaag       240
     aatccgcgaa aggaagcaca tcagcagagc tattcattcg tttctccacc gccgccatca       300
     tcgaatggta aaagcccgcg tgtgtcagtt tatttaataa aaagtgcagc aaaagttgtt       360
     ggagcccgtt ttccaaccac cagcaagcgg agtaggctat cggaaccaat cgggaagagc       420
     cagaatcgac cgattgcggc tgggaagcac ccaacatccg cagcaagctg atacaataca       480
     ggacccaata acgggccaga gaagcgcagc cggttttcaa tccaacccgt ctgtcgaagg       540
     ccacccacgc aacacgcacg gtgtcagtag gtcccaaagg tgagtgagcg gcaaattgca       600
     ttggagggat tttcaaaacc gctatgcctt ccattcccag ctaaggcaca cgagaggcac       660
     acgatcgaca taacctcaaa ccgtgcacgt gctgattggc ccttgtacgg ctagaaggtc       720
     acgaggcacg caaccaatcc cggaagtagg cgtgggacga cgagcttctt ccaaaggtga       780
     gataaaccgc ataattccca aaagaaacgc ttgaactaat cgcgtgatcc tcataggacg       840
     agtgacgcaa tagccaccgg cgaatcatcc aagctactga gactagcgag acacgagcca       900
     acaaaagccc cgaacgggta agaatgcatt ggcttcgagc gaccgatcaa aaggatgaca       960
     cctgtgcggc cttagggttt tgttttttgg tctcattgac aggtaatcag catcaacgat      1020
     ctttggaacg agattggcca ttagccggct gactgacagg aacgcatcct tgcgagaacg      1080
     tgcggacgca acagtggggg ctcccacgag tcggaataca agccgacgag caagcgaacc      1140
     tggtcgatca ccgggacgac ggaagtggcg agcgaacgcc ggtgggatca cgaaggcagc      1200
     ggcaagaatc aagccgggga gcaggtccag ctcgggcaaa gcgggcagcg agcccacgct      1260
     cactaggact accgagtgcc aacggccaac gaacgccact gagaggatct accggtgaaa      1320
     gctggtaaga cgcatgcgas gaagcggacg atttggaggc agcgtgatgt cgatggttgg      1380
     ccgattgatg accaaggaga gagagtgcgg atcgccgagc cgacgaacga aatgcctgag      1440
     caaacgactg gttaggtggt attagaccac gggcccgtga gtagacatta gatttaagat      1500
     tgatcgatca tgcctttaag gcgaagaagc caaagtggcc agacttaatg tataccatca      1560
     cacaataaat gtaacgtaga tgaaattttg gctttgttga tttgtagttg agctttagcc      1620
     cctcagtgtt tgcgattttg gtcttatgat cccctcgctt cggtagttct gctctacccc      1680
     taccgggaaa cttgcaaca                                                   1699
//
ID   Gypsy-50_AA-I repbase;    DNA;    INV; 4692 BP.
XX
AC   AAGE02019559;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_AA_;
KW   Gypsy-50_AA-LTR; Gypsy-50_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4692
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019559; Positions    5455     764.
XX
CC   Positions [2087-2620] - Reverse transcriptase
CC   Positions [3712-4173] - Integrase core
CC   'CCCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           674..2479
FT                 /product="Gypsy-50_AA-I_2p"
FT                 /translation="MDKWDIPAFKFKLMPPNEVRDEWIRYKRQFEYLSLAN
FT                 NVANRTRLKNIFLAKAGPDVQDVFSSIPGADVEERAGVDPFKMAIEKLDEY
FT                 FAPKQHEAYQRFLFWSLTLKEEEPLDKFLLRAMDSAGKCNFGTSKQTAYEI
FT                 CVIDKLIQLAPPDLREKLLQKEKLVLDEVIKIVNSHGTIKHQASQMTTGNV
FT                 GPSSSGFVNRIASLPKDNRFCCSRCGRRGHSGKDSICPARTRNCRICRKPG
FT                 HFAECCRTSRGPAKRETLEEPSNYHKRIKYQHVRTIQDAEDEGKPHSFIFT
FT                 VGDGDEFLWVKIGGVLIQTLIDSGSQKNILDDVTWENMKVQGAKVQNLRSA
FT                 SDQTFRAYGKSSDPLVVKQVFESIIEVEEGQNTISTTATFYVIEGGSQALL
FT                 GRATAKEMGVLALGLPSTEPPNVHRVRSERKRPFPKVKGIKLHIPINTSVT
FT                 PVTQHARRPPLALMDKIEEKLDSLLASDIIERVNEYSPWVSPLVTIVKDNG
FT                 DLRLCVDMRRANLAINRETHFMPTFEDFLPQLRKAKYFSRLDIKDAFHQVE
FT                 LDESSRHITTFITHKGLYRYKRLMFGVSCAPEMFQKVLEQILSGCKNVVRS
FT                 SMTV"
FT   CDS           2530..4659
FT                 /product="Gypsy-50_AA-I_1p"
FT                 /translation="MHTLQDKNVLLNHDKCILRVQEVDFLGHHLSEKGIRP
FT                 TDDKLAALRSFRAPQTSEELRSFLGLVTYVGRFLPDLATVCAPLRLLTHIG
FT                 VPFTWKNEHEIAFRRLQTMISDIATLHYFDNSLRTRVVADASPVGLGAVLV
FT                 QFANDRDDSCPRVISYASKSLSPTERRYCQTEKEALALVLAVERFSTYLLG
FT                 RKFELETDHKPLEMIFSPSSRPCARIERWVLRLQSFTFVVRYRKGTSNVAD
FT                 PFSRLATDCTTQDFDSDSPFLILDIMESAAIDTCELELASENDFELSVVKE
FT                 CVRTGKWDRAEAKPFEVFRNELGFVGDLLVRGSKLVVPKLLRSRMLVLAHE
FT                 GHPGETVMKRRLRDRVWWPSMDRDTSAYVTACEGCRLVGLPCKPEPMQRRE
FT                 LPVKPWVDIALDFLGPLPTGEYLLVVIDYFSRYKEIEIMKHITAEETILRL
FT                 QKIFTRLGFPITLTLDNARQFISAAFENYCTHNGIHLNYSTPYWPQENGLV
FT                 ERQNRSLLKRLQISHALGRDWKSDLQEYLLMYYTSPHSVTGKTPTELCYGR
FT                 TIRSKIPSLSDVEVAPSRDEVADRDRLLKKKGKDAEDGKRHAEHSDLKVGN
FT                 TVLMKNLLPGNKLTTTFGRNEYEVMSKDGSRVTVKDKTSGKIYRRNVAHLK
FT                 RIDSSHEGTNDSLASVAPCEPANPELSPSNSQADGSRLNLSEHSRTRRTLK
FT                 LPSRFKDYEC"
XX
SQ   Sequence 4692 BP; 1423 A; 939 C; 1158 G; 1172 T; 0 other;
     attggcgact gtggatgtgg aattattagg taagaatcgt attgcatatt tattcactcg        60
     aaaaaaacga aaaaaaacaa cgttcataga tcggctgcgc tgtgttgata ttgattggag       120
     attgaggtta tgtgttgtgc tatgaagggg ataaggcaat ttatctaaaa atcgcaggaa       180
     agctgagaat aggccttcga ggctggtggt ccaaacgatc gaaatgattg ataaatgaaa       240
     tgtatattga aggtcctgga gactggtaat gtacaggtcc aagagactgg agtcagagca       300
     gtgcgttaca gaaagattat ataggtcctg gagactgaaa aaacaggtcc gaaagactga       360
     aaaaaaggtc ccggagactg atactaataa agaaaggtct aagagactgc acatttgagg       420
     aaatgatatt cgatgtggga ggtccttgag actgaagaaa taaaaatatg agaagtaaga       480
     atattacgac gaagaagtat aatacatttt tgctttcagg tgaggatcaa atcgagccaa       540
     cgacgtgtta tctgatacaa aaaaacgggc acctatttgg tgaagttaag gtaacactat       600
     ttacgaatat ggactaagat tatgagaata aattttgaat attccagtaa cctgtgcaac       660
     tgagtcagcg aacatggata aatgggatat tccggcattc aaatttaagc tgatgccacc       720
     taatgaagtg agggacgaat ggatccgcta caaaaggcaa tttgaatacc tgagcctggc       780
     aaacaatgtg gcaaatagaa cgcgactgaa aaacatcttc ttggcaaaag ctgggccgga       840
     tgtccaagac gttttcagca gcattccagg agcagatgtt gaggaaagag cgggagtcga       900
     tccattcaag atggcgatcg aaaaactcga cgaatacttc gcgccgaaac agcatgaagc       960
     ttatcaaagg tttctatttt ggtcgctgac actgaaggaa gaagagccgt tggacaagtt      1020
     cctgttgcgt gcgatggata gtgccggtaa atgcaatttt ggaacctcta aacaaacagc      1080
     ctacgaaatc tgcgtaattg ataaactcat tcaacttgct ccacctgact tgcgagagaa      1140
     attactgcag aaggagaagc ttgtgctcga tgaggttatc aaaatcgtga attcgcatgg      1200
     cactatcaag catcaagcaa gtcaaatgac gaccggcaac gttggaccgt cttcatccgg      1260
     gttcgttaac cgaattgcca gtctaccgaa ggataatcga ttctgttgct ctcgatgcgg      1320
     tcgtagaggt catagcggga aagattccat ttgccctgcc aggacgagaa attgtcgcat      1380
     ttgtcgtaag cctggacatt tcgcagagtg ctgccgaaca tctcgaggcc ctgccaagcg      1440
     tgaaactctg gaagaaccaa gcaactatca caagcgtatc aagtatcaac atgtgcgaac      1500
     gattcaggat gctgaggatg aaggtaaacc acacagtttc attttcactg tcggcgacgg      1560
     ggacgagttc ttatgggtca aaattggagg cgtactgatt caaacactaa ttgattctgg      1620
     tagtcagaaa aacatcctgg atgacgtaac ttgggagaat atgaaagttc aaggcgctaa      1680
     agtacaaaat ttgcgatcag cttccgatca aacgtttaga gcatacggaa agagctcaga      1740
     cccattagtc gtaaaacagg tgtttgaaag cattatcgaa gtggaggaag gacaaaacac      1800
     tatcagcacc acagcaacat tttacgtcat tgaaggtggt tcacaagcac ttttgggcag      1860
     agcgaccgcc aaagaaatgg gtgtgctagc actaggactt cctagtacgg agcctcctaa      1920
     tgttcaccga gttcgttcag aacgaaaacg tccttttcca aaagtaaagg gtatcaagct      1980
     tcatatacct attaacacca gtgttacacc agtcactcag catgcccgtc gaccaccctt      2040
     ggcattgatg gataaaatag aagaaaagct agattcccta ttggcatcgg atataattga      2100
     acgcgtaaac gaatatagtc catgggtttc tccattggtc acgattgtta aggacaatgg      2160
     agacctacgt ttgtgtgtgg acatgaggag agcgaattta gcgattaatc gagaaacgca      2220
     ctttatgccg acgtttgagg atttcctccc acaactgagg aaagccaaat attttagtcg      2280
     gctggacata aaggacgctt tccaccaagt cgagctggat gaatccagca gacatattac      2340
     aacgtttatt acacacaaag ggctttaccg atataagcga ctcatgtttg gggtttcgtg      2400
     cgcaccggaa atgtttcaga aggttctgga acaaattcta tctggttgca aaaacgtggt      2460
     cagatcatcg atgactgtct aatattcggg gaaactttag aagagcacga tgaagctctg      2520
     gcgaaggtta tgcatacgtt gcaggataaa aacgtccttt taaatcacga caaatgcatt      2580
     ttgcgtgttc aggaggtcga ttttttgggc catcatctgt cggaaaaagg tattcgccca      2640
     accgatgata agctagctgc gttgagatcg ttccgtgccc cacagacttc ggaagaatta      2700
     agaagctttt tgggactggt cacctacgtt ggcagatttc tcccggacct ggcaacagtt      2760
     tgtgcaccac tgcggctact aacccacata ggggttccat tcacttggaa aaatgaacac      2820
     gaaatcgcat ttcgtcgatt gcaaactatg atctcggata tagcaacatt acactatttt      2880
     gacaattctc tgcgcacgcg agtagttgct gatgcatcgc cggtgggcct tggtgccgta      2940
     ctggtacagt tcgcgaatga tcgggatgac tcgtgccctc gtgtgataag ctacgccagc      3000
     aagagtctga gtccaactga gcggagatac tgccaaaccg aaaaagaagc gcttgctttg      3060
     gttttggcag tagagcggtt ctcaacgtat ttgctgggaa ggaaattcga gctcgagacg      3120
     gaccacaaac cgctcgaaat gatattttcg ccatcctctc gaccttgtgc gcgcatagaa      3180
     aggtgggtgt tgcggttaca atcattcacg tttgttgtgc gatatcggaa agggactagc      3240
     aatgttgctg acccgttttc tcgacttgcg actgattgta caacccaaga ttttgatagt      3300
     gatagcccat tcttgatttt ggatataatg gagtcagccg cgatcgacac gtgtgaactt      3360
     gaactcgctt cagaaaatga ttttgagtta tccgtcgtta aagaatgcgt cagaactgga      3420
     aaatgggata gagcagaggc taaacctttt gaagtctttc gtaatgaact gggatttgtt      3480
     ggagatctgc tagtgcgtgg ttcgaaactg gtggtgccga aattgttacg gtcaagaatg      3540
     ctagtgttgg cacatgaagg ccatccagga gagactgtga tgaaacgtcg attgagggat      3600
     cgcgtctggt ggcccagtat ggatcgtgat acgagtgctt acgtcactgc ttgcgaaggt      3660
     tgtcgcttgg ttggattgcc atgtaaacca gaacccatgc aacgcagaga attacctgtg      3720
     aaaccttggg tcgacattgc tttggatttc ctagggcctc tcccaactgg agaatacctg      3780
     ctagtagtga tcgactattt cagtcgatat aaagagattg aaataatgaa gcacattaca      3840
     gcggaagaaa ctattctccg attacaaaaa atatttacac ggcttggatt tccaattact      3900
     ctcacactgg ataatgctag acaattcatc agtgcggctt ttgagaacta ttgtacgcac      3960
     aatggaatac acttgaatta ctctacccca tactggccgc aagaaaacgg cctggtggag      4020
     cgccagaatc gctccttatt gaaacgactc cagatcagtc acgcgcttgg gcgtgattgg      4080
     aaatccgatt tacaggagta tttactaatg tattatactt caccacattc cgtcactgga      4140
     aagaccccta cggagctctg ttatggacga accataaggt cgaagatacc gtctctgagc      4200
     gacgtggaag ttgctccatc gagagatgaa gtagcggata gagatcgact tctgaaaaag      4260
     aaaggaaagg atgctgaaga tgggaaacgc catgcggagc actcagactt gaaagttgga      4320
     aataccgtgc ttatgaagaa tttgttacct ggaaataagt tgactactac ctttggtcga      4380
     aacgagtatg aggtgatgag taaggacgga tcccgtgtta ctgtcaagga taaaacatct      4440
     ggaaagatat accgaagaaa cgttgcacat ctcaaacgaa ttgatagtag ccatgaggga      4500
     accaatgatt ccctagcttc agtggcccca tgtgaaccag caaaccctga actgtcccca      4560
     tcgaatagcc aagcggatgg ttcaaggtta aacctctctg aacattctag gacacgacgc      4620
     acactaaaat tgccatcaag gttcaaggac tacgagtgct aagggatttt acgttcacga      4680
     gaaaaaggga ga                                                          4692
//
ID   Gypsy-50_AA-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   AAGE02019559;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_AA_;
KW   Gypsy-50_AA-I; Gypsy-50_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02019559; Positions     763     579.
XX
SQ   Sequence 185 BP; 61 A; 30 C; 40 G; 54 T; 0 other;
     tgtggtgctc taacactgtc actgacaaca cagatataga tcaactatgg ttagagggtt        60
     tgtttcgggg gtgattaaac acagaagtga gatattgaat caacaataaa cgtgtctgcg       120
     agtttcaata attatattcg taataagcgg tctttattaa tccggaagta tccgagaata       180
     ccaca                                                                   185
//
ID   Gypsy-50_AnFu-I repbase;    DNA;    INV; 5053 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5053
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2934-2934 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           954..4919
FT                 /product="Gypsy-50_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MQEVRPVPLFQCDKIETAKLATEWKSWKEAVECYFAA
FT                 YKVTDQAEKKAKLLHFGGPALQRVFRNLKDHEHVSLVVLETRWYDHAVEKL
FT                 DEFFGPQNQTTTERRNLRMIKQKPGERFADFIIRLKQQANQCGFDKYGDEI
FT                 GSTLREIYLTDAVVEGCSSNEVRRKILRKDLAFSEIEDIGVAQESVESQIV
FT                 EMTAGSPSKKIFKVEQGGKKGKSMTASTNTTETRQGAGKHNGKGCFNCGRV
FT                 GHFAASFNCPARGKECRNCKKIGHFEQMCRKPTEKGPMKRQIRAIDESSEA
FT                 KQPKMESNDTKAYYAFYSGNESNVIKCLLGGVSLEMLVDSGADANLIPGEI
FT                 WEKLKTENVAVVSSTKGSSKILRAYGSQNPLVILGTFAAEIAVAGKRTQAE
FT                 FFVVEGGQRCLLGDRTAKQLGILKVGLDINRVEGKPFPKMKGITAKIRMNP
FT                 QVIPVYQPMRRIPLPLEESVDRKLDGMLKRDIIEIKTGPTTWVSPLVVVGK
FT                 SNGEPRLCLDLRRVNEAVLREHHPMPSVDDYLAKLGHGRLWSKLDIKEAFL
FT                 QVELDEDSRDMTTFITRRGLYRFKRLPFGLVTAPELFQKAMDEILSGCEGT
FT                 VWYLDDVLVEGKNLQEHDERLNEVLSRLNSRGVELNWEKCQFRVTELDFLG
FT                 HSLGETGIMPARSKVETILSFREPQSEAEVRSFLGLANYLNKFVPMLATLD
FT                 EPLRRLLHKDTKFEWTKEQAKAFNAIKEAMGKIENLGFYKVEDRTAIITDA
FT                 SPHGLGAMLIQFDETD*HRIISFASKALTDTEHRYCQTEKEALGIVWGVER
FT                 FQYYLLGKPFDIFTDCKALSFLFSKRSKPCARIERWVLRLQAFDYRIRFLA
FT                 GKDNVADALSRLPVQKAKPFDPSEEIFVREVATHAANTSALNWREIKAVSK
FT                 EDVETQEVLTLLTTGEIQKLPIEYRVIANELCELEGVLLRGDRIVVPLALR
FT                 DQVLKTGHEGHPGITMMKNHLRSHVWWPKMDGQVENFVKSCRGCTLVGAST
FT                 NPEPLQRSKLPVAPWHTIALDFLGPLPEGQHILVVVDCYSRFMEVCEMNTT
FT                 TTRDVIKELSTMFSRYGIPVVMKADNAPQLSGECTEWTEFCETNGIKLVNT
FT                 IPYWPQSNGEVERQNRSILKRLRISQELGRDWRKELYMYILTYHATKHPTT
FT                 GKSPAEIMFGRRIKSKLPSVSSFQEDPEVRDRDILVKEKGKQYADKRRNAQ
FT                 ESSIGEGDHVLAKRMRRLNKLDTEFSNEEFIVRHKKGTDTIIQSKETGKEY
FT                 RRSSAHLKKIDHDSPGKLMRSSSLTEIIPDSGQKSDKTASESGPSKRLIQP
FT                 PLRHRDYVSH"
XX
SQ   Sequence 5053 BP; 1670 A; 850 C; 1266 G; 1267 T; 0 other;
     attggcgacg aggattttgg attcgactcg aaaaggtgat ggaaatacag agtttttttt        60
     ccccctgtta agtggaatgt ataatgtatt ttgtcaaata agcgaataga atagtaaaaa       120
     aaaaaattgt gatcagacag tgcataagtt tgtacattaa gcaacaagtg taataaagag       180
     tgaggttatg agaagcgtcg gtttcggtag cacgcgtgaa gttctcggaa accgtggtga       240
     aatggcgagt atgaactgga ttgtgcatgt atatagattg ttggctgaaa tggctcaacg       300
     tgaaaggcgg aaagttagca gcgtttattt ttttggaaaa cgtgtagata ttaaaacatg       360
     aacatagaaa atatgaagag tggcgaaaac gattcgagtt ttcccagaac gatcacatgg       420
     cggaaatcaa tggatttctc cagaagaagc gcgagaattg tttagaattc tccgggttta       480
     taaaatggag gttggcagaa atcagtggat ttctccagaa gaatgcgaga attgtttaga       540
     attctccggg gctgtgcaaa ggagatggcg gaaatcagtg gatttctcca gaagaagcgc       600
     gagaattgtt tagaattctc cggagttgta caaaggaggt tggcagaaat caatggattt       660
     ctccggatgg agtgcgagaa ttacttacaa ttttccttgg aacgatatta tcggaggaca       720
     ctaaacgtgt catcgggaaa ggtagcgagg attgtcagaa gcctcgaatg tgttaatggt       780
     aatggtggtt catcgagaag agaatagaaa attgatttga tcaattttgc ctgtttgttg       840
     catgttgagt tgaacactaa tctggacacc tttttagttt ggtttttttt cccttgttgt       900
     ggaaaaatgt tttattgtgt ttttgttgtt gttgttattt tcttgcattg cagatgcaag       960
     aagtacgacc agtgccactg ttccagtgcg acaaaattga aacggcgaag ttagcaacag      1020
     aatggaaaag ttggaaggaa gccgttgaat gttacttcgc ggcatacaag gtaacagatc      1080
     aagcggagaa gaaggcaaag ttgttacact tcggaggacc ggcactgcag cgggtattta      1140
     gaaatctgaa agaccatgag cacgtatcat tagtagtact ggaaacccgg tggtacgacc      1200
     atgcagtcga gaaactagat gaatttttcg ggccgcagaa tcaaaccacc acggaaagac      1260
     ggaacttacg aatgattaaa caaaaaccag gcgaacgatt tgccgatttc ataatccggc      1320
     ttaaacaaca agccaatcag tgcggattcg acaaatacgg cgatgaaatc ggttcaacgc      1380
     tgcgggaaat ttatctaaca gatgcagtag tcgagggatg ttcctcaaac gaggttcgac      1440
     gaaaaatttt gcgtaaggat ttggcgtttt ccgaaattga ggacatagga gttgcgcaag      1500
     aaagcgtaga aagtcaaata gtggaaatga cagctggttc accatctaag aaaattttca      1560
     aagtagaaca aggagggaag aaaggaaaat ccatgacagc aagcacaaat accacggaaa      1620
     caagacaagg tgcaggcaag cataacggga aaggttgttt caattgtggt cgagtaggac      1680
     actttgcggc atccttcaac tgccctgctc gtgggaaaga atgtagaaac tgtaagaaga      1740
     tcggtcattt tgagcaaatg tgccgaaagc ccacggaaaa gggcccgatg aagcgtcaaa      1800
     taagagcaat cgatgaatcg tcagaggcaa aacaaccgaa aatggaatca aatgatacaa      1860
     aagcatatta tgcgttctat tctggaaatg aatcgaacgt aattaaatgc ttacttggag      1920
     gagtgtcctt agagatgttg gttgattccg gtgcagatgc taacttgatc ccaggcgaaa      1980
     tatgggagaa attaaaaaca gaaaatgttg cggtggtttc atcaacgaaa ggaagctcga      2040
     agatcttgcg agcatacgga agccaaaatc cacttgttat tttaggcact tttgctgcgg      2100
     aaatcgcagt agcgggcaaa cgaactcagg ccgagttctt tgttgtagaa ggaggacaac      2160
     gttgtctact gggtgacagg acggctaaac agctgggtat tttgaaagtt gggttggaca      2220
     taaacagagt agaaggaaaa ccgtttccaa aaatgaaagg cataacagca aagatcagga      2280
     tgaacccgca ggtcatccca gtatatcagc cgatgcgacg tattccctta ccattggaag      2340
     aatcagttga tcgaaagttg gatggaatgc tgaaacggga tataatcgag ataaaaacag      2400
     gaccaacgac ttgggtatcg ccattggtcg tagtagggaa gtcaaatggt gagcctcgat      2460
     tgtgtcttga cttgcgaaga gtcaacgaag cagtattaag agaacatcat ccgatgcctt      2520
     cggttgacga ttacttggca aagttaggac atggacggtt gtggagcaaa cttgacatca      2580
     aagaagcatt ccttcaggta gaactggacg aggattcacg agacatgaca acttttataa      2640
     ctcgacgtgg tttgtatcgg ttcaaacggc tgccatttgg tttggtaaca gctccagagc      2700
     tgtttcaaaa ggcaatggat gagattctat ctggttgtga agggacagtt tggtatcttg      2760
     atgatgtact tgttgaaggc aaaaatctgc aagagcatga tgaacggttg aatgaggtgc      2820
     tgagtcgatt gaatagtcgt ggagtcgaat taaattggga gaaatgtcaa tttcgggtaa      2880
     cggaattaga ttttttagga cacagtcttg gggaaactgg aattatgccg gcaagaagca      2940
     aagttgaaac tattttatca tttcgggagc cacaatctga agcggaagtc cgtagtttcc      3000
     tcggtttggc aaattacttg aataagtttg taccaatgtt agctactctt gatgaaccat      3060
     tacgccggtt attgcataag gatacaaaat ttgagtggac caaggaacaa gcaaaggcat      3120
     tcaatgccat aaaggaagct atgggaaaaa ttgagaattt gggattttat aaagtcgagg      3180
     accgaaccgc aataatcacg gacgctagtc cgcatggttt aggtgctatg cttatccagt      3240
     ttgacgagac cgactgacat cgaattatca gcttcgcatc taaagcgtta accgacacag      3300
     agcatcgtta ctgtcaaaca gagaaggaag cattaggcat tgtttggggt gtggagcgtt      3360
     tccaatatta tctactagga aaaccattcg acatattcac ggactgtaag gcactgagtt      3420
     ttctcttctc aaaacgatct aaaccgtgtg cgcgcataga aagatgggta ttgcggttac      3480
     aagcttttga ttacaggatt aggtttttgg cgggaaaaga taatgtggca gatgctctat      3540
     ctcggttacc agtacaaaaa gcgaagccat tcgatccatc agaggaaata ttcgttaggg      3600
     aagttgctac acatgcggca aacacttcgg cgttgaattg gcgggagata aaagcagtaa      3660
     gcaaagaaga tgtagaaaca caagaagtat taacattatt gactacggga gaaatccaaa      3720
     aattaccgat agaataccgc gtgatcgcca acgagttatg cgaactagaa ggagtacttc      3780
     tacgaggaga tcgaattgtt gttccattag ctctaaggga ccaagttctt aaaaccgggc      3840
     acgaaggaca cccaggaatt actatgatga aaaatcactt aagatctcat gtttggtggc      3900
     caaaaatgga tggccaggta gaaaattttg tgaaaagctg tcgaggctgt acactggtag      3960
     gggcttcgac aaacccggaa ccactacaaa gaagcaaatt gcctgttgct ccttggcaca      4020
     caattgcatt agactttctt ggtcctctac cagaaggtca acatatattg gtagtggttg      4080
     actgttatag tcgatttatg gaggtgtgcg aaatgaacac gacaactaca cgggatgtta      4140
     taaaagagtt atcaacaatg ttcagtcggt atggcatccc agtggtaatg aaagcagaca      4200
     acgctcccca acttagtgga gaatgtactg aatggacgga attttgcgag acaaatggta      4260
     tcaaattagt gaacaccatt ccctattggc ctcaatcgaa cggagaggtc gaaaggcaaa      4320
     atcgttcgat tttgaaacga ttgcgaatat cgcaagaact tggacgagat tggcgaaaag      4380
     aactgtacat gtacatactg acataccatg caaccaaaca tccgacaaca ggaaaatctc      4440
     cggcggaaat aatgtttgga cggcgaatta aaagtaaatt gccttcagtg tcatcattcc      4500
     aggaagaccc ggaagtgaga gatagagaca tattggtaaa agagaaaggg aagcaatatg      4560
     ctgataaaag gcggaacgcg caggagagct caataggaga aggtgatcat gttttggcaa      4620
     aaagaatgcg tagattgaac aaattagata cggaattcag caatgaagaa tttattgttc      4680
     gccataaaaa aggtactgat acgatcattc agtcaaagga aacaggcaag gaatatagaa      4740
     gaagttcagc tcatcttaaa aagatagatc atgattctcc aggcaaatta atgcgttcga      4800
     gttctcttac tgagatcatc ccggattcgg gacaaaaatc ggataagaca gcatctgaat      4860
     caggtccatc caaacggtta atacaaccac cattgaggca tcgggactat gtatcgcatt      4920
     aacgttttca taataatacc tgaactataa cgaagtaata acgaactaag gaagaaaaga      4980
     tttatattaa gtgcttcatg gaattttatc aatagaatta tacacagatt aaaaattata      5040
     taaaaggggg gat                                                         5053
//
ID   Gypsy-50_AnFu-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-170
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2862-2862 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 170 BP; 48 A; 36 C; 46 G; 40 T; 0 other;
     tgtagcatat gactttattt atacaccttt ggcaatcgac cttatggaat tgttaattgg        60
     gttgccgcac acacacatga agaggcgcag gagcagaccg cttagggaag gcaacgggga       120
     ttcgatgttc gactatcgac gggagcagaa cgacctggta cgatactaca                  170
//
ID   Gypsy-50_CQ-I repbase;    DNA;    INV; 10153 BP.
XX
AC   AAWU01002291;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_CQ_;
KW   Gypsy-50_CQ-LTR; Gypsy-50_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-10153
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 479-479 (2011).
XX
DR   Genome; AAWU01002291; Positions   30103   40255.
XX
CC   Positions [5127-5636] - Integrase core
CC   'CAGG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1718..4300
FT                 /product="Gypsy-50_CQ-I_1p"
FT                 /translation="MSIHFTKNNKKLNLLIDTGADISLLKASCLDTGDEIY
FT                 LNEKVLVSGISNGILQTFGTMKSCFSFPNGEFHFKFHVMNNDIGLSKIDGI
FT                 LGRDVMYPLKSVINMNDKTFKLKHNNDEIIFKIQERIEENTENTINENKKI
FT                 IEEDKIDNKEGNEDIKKEENNDEFKDHKKNKNNVLNYYESDDSKLNVCDDT
FT                 RPVSEENEIELNCHKHINMNIANEVVYPEDNFLLDDCSRTESILKNENIHS
FT                 DENYAMRLSILKKELKIDPLLNEKEKISLKKIIVYYNDIFFVEGDKLSCAD
FT                 VVRHSINLSSDKPIYVKQYPLPQIYRQEVNKQVSKMLNDGIIEPSTSAYNS
FT                 PLLVVPKKSENGEKKYRVVVDFRKLNEKTVADTYPIPNISEIIDQLGNSSF
FT                 FSSLDLASGYHQILMDEKDKEKTSFSTNFGKYQYVRMPFGLSNAPSTFMRY
FT                 MNNIFVGLQGHKCFIYLDDIIVHGKTLEEHNKSLEEIFSVLRKHNLKLQPN
FT                 KCHFLKSELNYLGHIISSNGILPNKENIKAIDNFPIPKTVKQLQSFLGMAN
FT                 YYRKFVPEFAKICLPLYKILKKENNFKFDDNCLNAFKILKNKLITPPILQF
FT                 PNYTKIFIITTDASQYALGAVLSQGDDVDLPIAYASTTLNKAEVNYSTIEK
FT                 ELLGIIFGVRQFRTHVLGRKFIIRTDHKPLVYLFNHKNPCSRLIRWKVELM
FT                 EYCYDITYKPGLTNVVADCLSRIPSETLIGNFKEDEFEENKIFKFNLHVHY
FT                 TKVQKINLTNLIISKVGVITRNHCKKDFQTCIEDKSDALFAFTKVDKISES
FT                 CVALTIKQVNKIDENIPILNLITNNLVTITVDKTYQKNPEQLFKKNSKFKR
FT                 NSRKIKQK"
FT   CDS           4359..5984
FT                 /product="Gypsy-50_CQ-I_3p"
FT                 /translation="MLKYIFRDTKVKLYLLNNSPEFNKVTLTSPNSIDEVP
FT                 KESKKQETINNDRLNKLTNELTLQNFNELKNNFDINQLNYKVFQSPVTLEK
FT                 VSNKCLKIFFKIVQIMNHSRHYKIICKNNEVEIEVMEGSQLSVEDIFEILL
FT                 FIRNFCSTNYFKNIAIDSFPKCCFEHDSEIIKLLTKYIFNNSNISVILIQN
FT                 TVKTLTNIDEIENILHLFHKSKLGAHTGTKRMLKRIQDLYIWKNMRKDIDT
FT                 YVKDCVECARSKIRRKTKMPMAITTTAHKTFEKICIDIVGPLPVTEKGNKY
FT                 ILTIQDDLSKFLFAFSIKDQEATTIAKVFVEKFICVFGVPKSVLTDNGSNF
FT                 ISNLFKNVCKLLNIKKINISAYHPESNGALERTHRTVKEFLRAEISHKHKD
FT                 WDTLLPFGCFAFNTTKHTSTNFSPYELVFGKKCILPQTLIREPEVYYNYED
FT                 YLLDLKNTLRLTQNEARRQLIENKQSSKEYFDKKVNPINIEIGDKVYIDNI
FT                 AVGVGQKLQPLRNGPYEVIGMNSNETVTLKIGNKEYKTHKNRLFKP"
FT   CDS           6204..7991
FT                 /product="Gypsy-50_CQ-I_4p"
FT                 /translation="MWILLLLVGYTSALDLSSTKLDKSGAVLERIPNVAFV
FT                 KQHLKMATYVDLDKLKEEMKFAQNMTVMTKDACDKMLAVNISKNCEYELSS
FT                 LVSTWDSVSHSISIFNNKDKRSAPWLGVVGKIAKTIIGTLDADDGLFYEEQ
FT                 FAKVKSNEDLLLKRINKHTIILDSIFDLLNKTNTPTSDFFKNFNSKLDHFE
FT                 KSFSEFQTNVKNELKRISAELVFRDCYAITESVVLALKSKVDLLVTLLGGD
FT                 KDHLNPFLFSPSILYNKLSEANSFIPKSSKLPLPVNWAHIFEYYRISTGSQ
FT                 HRFGSYLIFTANIPLVHSESFNVFKLTPVPVRIENNKYSIFKFDNDILIAD
FT                 NDMKKFSMMDTEHFEHCQHAENLTLCPHIFIMKSSPSCETEILKFSNNIEK
FT                 ICRRSIIQIDNLLFIKLFKTNSWVVVNPQSEVAHLNCLDSSKPVQLRDSSI
FT                 IEIKANCKLISEHINLYPAQMIESNITIYFNWNLNFSKINFNFSSDFNIDS
FT                 IEFPKINVPIINMKDAKALANLGKDIEDLKKEKIELQNLNKQNTSDFIIQT
FT                 SSILLIFAIFGYIIYDKCIRKKNTININTIEMQKEEIQEKTLVPFRRKK"
XX
SQ   Sequence 10153 BP; 4182 A; 1404 C; 1456 G; 3111 T; 0 other;
     ctggtgtcaa agtaaaaatt tagggtgtta aagtgttaac cgaaatcaag tgataaatag        60
     ttcaaaagga agagagcaag taaagttcta tcaaaagttt acaaaaggaa aaaagttaag       120
     tgaacagtga aaaccaacaa aacatcggaa actgcagcaa caacaacaac aacatcaaca       180
     ggttagtacc actctcaaat aattgaccaa attatttttt tttttgaatt tatgtgaatt       240
     tatataaact tattgaaaaa ttgttttgaa tttaagtttt gttttgaaaa atatgatttt       300
     taatgagtga tactacgcca agattactca gatctggtat agtaccaaaa aaactgtcat       360
     taccaaaaag tgacgaaata aaattaaaat taaaaagccc tttagaaacc ttatttaaaa       420
     ggaaagtaaa gaatcaggga actcaaacag atcctgaact agatctagaa accgatactt       480
     caagtgaatc tggatcaagt gaaaaaagtt ttgtaattaa aacaccaaaa atgtcatcaa       540
     ttaaactgga aagtgttcca atttttgatg gggtttattc aaaattaaaa acatttgtag       600
     aactgattga cttaatttac gaacttgaag atggcaaaga taatgataaa atctttgcca       660
     aagccgtttt ttatttacgt ttgtccgagt cagttcggaa caaaataaac gtaaattttg       720
     aatcatggaa acagttgaaa gaattgttgg aaaatcaatt caagcatgat ccaacaatat       780
     ctttcaaaca ggcaacaaaa tttaatcagt tggcaatcat ggagactgaa acactttcgc       840
     aatttgtcga taggttaatc gacaatttag aagcaatcag atcgtcaagt gaaagtgaac       900
     agaatttgtg gcggcttgct gaggagcaag ccatagaaaa aataaaagaa tattgtccga       960
     ggaatagtcg gataatatta ggaaatccct cttctttaga agaggccaaa tttgttttag      1020
     aaaccaaagg aatcggtcaa tctaaagtga caaagaattt caaaacagtt gaagaattag      1080
     ctcgtttaga atggcaatca gagccagata gttctcaaaa ttgttggggt gctccaattc      1140
     aacaaaattt taaaaataat tacagacctc aaggaaattt tcgatttaat aatcaaaaca      1200
     attttcaagg taattccagt tactttccac gatatcaaaa tcaaagatat catgatcaaa      1260
     gatatcaaaa tcatagatat caggatccag gatatcagtt tcaaagatat caaaatccta      1320
     gatatgaaaa ttcaaacttt agaaataatt tcaatcataa caacaatcac aatcataata      1380
     atcataataa tcaaaatttc agaccaccaa atcaaaattc ttacagaaat tacaataacc      1440
     aaaaccaaaa cggcaattca tttagacaaa ataatcctaa tggtcgaaat tttcaaaata      1500
     atgttatgaa cactcaaagt tttcctgcta taatgcctaa cagtgaaaat cctgagactg      1560
     ttcaatttat tgacaaaaag gaatatgaag aattcttgca gttcaaattg caaaaaaact      1620
     tgtaaataat agtgatttat tctgcgtcac taaaagagga attgataaaa gccagaaact      1680
     caacagaata tattcattta atattgaaag ttctccaatg agcattcatt tcacaaaaaa      1740
     taataaaaaa cttaatttat taattgatac aggtgcagat ataagtctgc ttaaagcaag      1800
     ttgcttagac acaggtgacg aaatctattt gaatgaaaaa gttttagtat ctggaatttc      1860
     taacggaatt ctccaaacat ttgggactat gaaaagttgt ttttctttcc ctaatggaga      1920
     atttcatttc aaattccatg taatgaataa tgacatagga ctttctaaaa ttgatggaat      1980
     tttaggaagg gatgtcatgt atccattaaa aagtgttata aatatgaatg ataaaacatt      2040
     caaattaaaa cataacaatg atgaaatcat ttttaaaatt caagaaagaa tcgaagaaaa      2100
     tacagaaaat actatcaatg aaaataaaaa gataattgaa gaagataaaa ttgataacaa      2160
     agaaggtaat gaagatatta aaaaagaaga aaacaatgat gaattcaaag atcataaaaa      2220
     aaataaaaat aatgttctca attattatga atctgacgat tccaagttaa acgtatgcga      2280
     cgataccagg ccagtatccg aagaaaacga aattgaactg aattgtcata agcatattaa      2340
     tatgaatata gctaatgaag ttgtctatcc ggaagacaat tttttattag atgattgttc      2400
     gagaactgaa agcatattaa aaaatgaaaa tatacactca gatgaaaatt atgcaatgag      2460
     actttctatc cttaaaaaag aattaaaaat cgatccacta ttgaatgaaa aagaaaaaat      2520
     atcgttaaaa aagattattg tctattataa tgacatattt tttgtcgaag gagataagct      2580
     atcatgtgca gatgtagtac gacatagtat aaacttgtcg tcagataaac caatttacgt      2640
     aaaacaatat ccacttccac aaatttaccg tcaagaagtg aacaaacaag tttcaaaaat      2700
     gctgaacgac ggaataattg aaccaagcac aagtgcttat aatagcccgt tgttggtagt      2760
     tccaaagaag tcggaaaatg gagagaaaaa gtatcgcgta gttgtagatt ttcgtaaatt      2820
     aaatgaaaaa acagttgcag atacttatcc aattccaaac atttcagaaa ttattgatca      2880
     actaggaaat tcttcgtttt tctcatcttt agatttggca tctggttacc accagatact      2940
     aatggacgag aaagataaag aaaaaaccag tttttctact aactttggaa aataccaata      3000
     tgtacgaatg ccatttggtt tgagtaacgc tccgagtact tttatgcgtt atatgaacaa      3060
     tatatttgtg ggtcttcaag gccacaaatg ttttatttac cttgatgata ttattgttca      3120
     tggcaaaact ttagaggaac ataataaaag tttagaagaa attttctctg ttttaagaaa      3180
     acataattta aaacttcagc caaacaaatg tcatttttta aaatctgaat taaattattt      3240
     aggacatatt atttccagta atggtatctt accaaataaa gaaaatataa aagcaattga      3300
     taattttccc attccaaaaa ctgtaaaaca attacaatca tttttgggta tggctaatta      3360
     ctataggaaa tttgttccag aatttgcaaa aatttgtcta ccgctttata aaatcttaaa      3420
     aaaggaaaat aattttaaat ttgacgataa ctgtttaaat gcatttaaaa tactgaaaaa      3480
     taaattaatt actccaccaa ttttacaatt tccaaactat actaaaatat tcatcatcac      3540
     tactgatgcg tctcagtatg cactgggagc agtgttatca caaggtgatg acgttgatct      3600
     gccaattgcg tatgcaagta caaccttaaa taaggccgaa gtaaactatt ctactataga      3660
     aaaagaactt ttaggcatta tttttggagt acggcaattt agaacgcacg tattaggaag      3720
     aaaattcatt attagaaccg accataaacc attagtctac cttttcaatc ataaaaatcc      3780
     ttgttctaga ttgataagat ggaaggtcga actgatggaa tattgctatg acataacata      3840
     taaaccaggt ttaacaaacg tggtagctga ttgtctcagc aggattccat cagaaacatt      3900
     aattgggaat ttcaaagaag atgaatttga agaaaataaa attttcaagt ttaacctaca      3960
     tgttcactac acaaaagtac aaaaaataaa cctcacaaat ttaattatat ctaaagttgg      4020
     tgtcataaca agaaatcact gtaaaaaaga ttttcaaaca tgcattgaag ataaatctga      4080
     tgccctattt gcttttacca aagtggataa gatttctgaa tcttgtgttg ctttaactat      4140
     taaacaagta aacaaaatag atgagaatat tccaatttta aatttgataa caaataactt      4200
     ggtaactata accgttgata aaacatacca gaaaaacccg gaacaattat ttaaaaaaaa      4260
     ttcaaaattt aaaagaaatt ctagaaaaat taaacaaaaa tgaattatgt tttgagaaga      4320
     atgatcaaca tgtattgaaa ttttctttaa ttttgaaaat gcttaaatat atttttcgag      4380
     atactaaagt taaactatat ttactaaata attcaccgga attcaataaa gtaactttaa      4440
     catcccctaa ttccattgac gaagtaccaa aagaatctaa aaaacaagaa acaataaata      4500
     atgacagatt aaataaatta acaaatgaat taactttgca aaattttaat gaattaaaaa      4560
     ataattttga tataaatcaa ctaaactata aagtttttca aagcccagta acgctagaaa      4620
     aagtttcaaa caaatgttta aaaatatttt ttaagattgt ccaaattatg aatcattcta      4680
     gacattacaa aataatttgc aaaaacaatg aagtagaaat tgaagtgatg gaaggatcac      4740
     aactttctgt ggaagatatt tttgaaattt tactatttat tcgtaatttt tgttcaacga      4800
     actattttaa aaatattgct atagactctt tcccaaaatg ttgtttcgaa cacgattctg      4860
     aaataatcaa attattaact aaatacattt ttaataacag caacattagt gttatattaa      4920
     tacagaatac agtgaaaacc ttaactaaca tagatgagat agaaaatata ctccatttat      4980
     ttcataaatc aaaactagga gctcatactg gtacaaagcg aatgcttaaa cgaattcaag      5040
     acttatatat ttggaaaaat atgcgtaaag atattgatac atatgtgaaa gattgtgtag      5100
     aatgtgcacg atcaaaaatt agaagaaaaa ctaaaatgcc aatggcgatt acgaccacgg      5160
     cacataaaac atttgaaaaa atttgtattg acattgttgg acctttgcca gttacagaaa      5220
     aaggcaataa atatatttta acaattcaag acgatcttag taaattttta tttgctttct      5280
     ccattaaaga tcaagaagct actacgattg ctaaagtctt tgttgaaaaa tttatttgcg      5340
     tgttcggagt acctaaatct gttttaacag ataatggttc gaattttata tcaaatcttt      5400
     tcaaaaatgt ttgcaaactt ttaaatatta aaaaaataaa tataagtgct taccatcctg      5460
     aatctaatgg ggcacttgaa agaacacatc gcactgttaa agaattttta agagctgaaa      5520
     tctcccataa gcataaggat tgggatacac ttttaccgtt tggttgtttc gcttttaata      5580
     caactaaaca caccagtact aatttttctc catatgaatt agtatttggg aaaaaatgca      5640
     ttttacctca gacattaata agagaaccag aagtgtatta caattatgaa gattatttgc      5700
     tagatttaaa aaacacatta cggctaactc aaaatgaagc cagacgccaa ttgatcgaga      5760
     ataaacaatc ttcaaaagaa tattttgata agaaagttaa tccaattaat attgaaattg      5820
     gggacaaagt gtatattgat aacattgcag tgggtgttgg tcagaagtta caacctttgc      5880
     gtaacgggcc atatgaagtt atcggaatga actcaaatga aacggttact ttaaaaattg      5940
     gaaataaaga gtacaaaact cacaaaaata gactatttaa accatagata gtggaaggtg      6000
     ataaaaaaaa aaatatgtta aaacgctgtg cttacgaata agatgtaatc taaaatgtct      6060
     tatccgtatg tattgcgaag tagaagtacc tgttatttat tttttttaaa ttactgatat      6120
     tatttttttt ttctttctca tagcagcagt tgtatctttg tttttcttcc cttttgtttt      6180
     gtgtcatatt tatttcagaa atcatgtgga ttctacttct cctagttgga tatacgtcag      6240
     cattagacct tagttcaaca aaactggaca aatcaggagc agtgttggag agaattccta      6300
     atgtcgcttt tgttaaacaa catctaaaaa tggccacgta tgtcgatctg gacaagctga      6360
     aagaggaaat gaaatttgca caaaacatga ctgtcatgac gaaggatgct tgtgacaaaa      6420
     tgttggctgt taatatatca aaaaactgtg agtatgagtt gtcatctttg gtgagtacat      6480
     gggatagtgt atctcattca ataagtattt ttaacaataa agataaacgt tctgctcctt      6540
     ggttgggtgt tgtcggtaaa atagcaaaaa ccataatcgg aactcttgat gctgatgatg      6600
     gactgtttta cgaggaacag tttgcgaaag taaaaagcaa tgaagatctt ttattaaagc      6660
     gtatcaataa acatacaata atcttagatt ccatttttga tttgttaaat aaaactaata      6720
     caccaacctc tgattttttc aaaaatttta atagcaagct tgaccatttc gaaaaatcat      6780
     tttctgaatt tcaaacaaat gttaaaaatg agttaaagag aattagcgca gaactcgtat      6840
     ttagagattg ttacgcaatt acagaatctg ttgttttagc attaaagtca aaagtagatc      6900
     ttttagttac acttcttgga ggagataaag atcatttgaa tccattttta ttttcaccga      6960
     gtattttata taataaacta agtgaagcaa attcctttat tccaaaaagt tctaaactgc      7020
     cattgccagt aaattgggcg cacatttttg aatactacag aatttcgaca ggatctcaac      7080
     atagattcgg gtcttattta atttttacgg caaatattcc attggtacat agtgaatctt      7140
     tcaacgtttt taaattaact cctgtcccag ttagaattga aaacaacaaa tattcaattt      7200
     ttaagtttga caatgatatt ttgatcgcgg acaatgacat gaaaaaattt tcaatgatgg      7260
     acacggaaca tttcgaacat tgccagcatg ctgagaattt aactttatgc ccacatatat      7320
     ttattatgaa aagtagtccc tcttgtgaaa cggagatctt gaaattttca aataatatcg      7380
     aaaaaatttg cagaagatcc attattcaaa ttgacaactt actatttata aaattattca      7440
     aaacaaattc ttgggttgta gttaatccac aatcggaagt tgcgcatttg aactgcttag      7500
     attccagcaa accagtccaa ttacgggatt catctatcat tgaaataaaa gccaattgta      7560
     aattgatttc agagcatatt aatttatacc ctgctcagat gatagaatcc aatataacaa      7620
     tttattttaa ttggaatcta aatttttcca aaattaattt caatttttct tctgatttta      7680
     acattgattc aattgaattt ccaaaaatta atgtgccaat tattaacatg aaagatgcta      7740
     aagcattagc aaatcttggt aaagatatcg aagatctaaa aaaagagaaa atcgaattac      7800
     aaaatctgaa taaacaaaat actagcgatt ttattatcca gacttctagc attttgttaa      7860
     tatttgccat ctttggctat ataatttatg ataaatgcat aagaaaaaaa aatacaatca      7920
     atatcaatac aatagagatg caaaaagaag aaatacaaga gaaaacattg gtaccgttta      7980
     gaagaaaaaa atagataatt gtttttgatt attatttctt gcaaaaagaa aagtacataa      8040
     atatattagt taaggtaata ttaaaaagtt ttaaattttt tagacagagc tcactttaaa      8100
     aaatttgaaa cttagaaata ttaaagtata ttaagtaatg gtatcaaatt gaaaaaaatg      8160
     ataaattcac ttaaacaaaa aaaaaaaaaa agatcatttg gataaaaata aatagaatct      8220
     gtaaaaaact gagattaaca aagaggacaa ttatttcgac tagatcaata aaaatgtttg      8280
     taaaatgtat actcaaaatg attaaaaaaa aatgtattca ataaaactgg taatactatt      8340
     ctcaaaacaa aacattgtaa ttaatactta gtgttaaata aacattagta tcaatgagga      8400
     aaaagaagga aaagaaaatt ttcaacaaat taagatcaat gttcatcacg tggattacaa      8460
     gatatatgat tttaaaatac atttattaca tatttgttac atttattaca gacaataata      8520
     aaattatgaa attatatttt taacacaata tttatacatg atagtttata atcaataatg      8580
     ataagataaa agcacacaaa aagaaaaaca ttcaataaat ggatttctaa ttatttgagt      8640
     gattctatta aatagaaaag agaattcgaa tcaaatgtta catagatata tatatatata      8700
     tatatatatt tttaatttta ttcccacaaa ctaaacataa tttcaaaaaa aaagacagga      8760
     aaaaacgaat aaaacatgaa tatactttta tagaattata atctaataac ttgatatttt      8820
     aaaacactat taaaaacaga ttgtaaaaaa gaagaaattc agtaaataaa ccatttatta      8880
     taacagaaaa attgtttaaa aatatattaa aaataaaaca ttttttttgt attatttagc      8940
     aagacgattt agtttttata attttatttc aatcaatgta actttcaaaa gtaataataa      9000
     attgaagata aatatgatta tcataaaaca aaaatacagg aaattagtta gtaacataca      9060
     tttataacgg taaaaaaaaa gagctgtaaa agagtttttt tgtttgttag ggggaaggga      9120
     accccttcgt cgtcaaacgc atcaacagtg caacaataac acatccccgc aatcaacaaa      9180
     acaataatag gaccaaggac aagaccaaca actgcaacaa aatcgtaata gtggataaaa      9240
     tcatcgtcgg acgacttcgg agattcaacg cattttcaac gcctacatac agccatcctg      9300
     atcaaccata aacattcaaa agtttcaaaa caaatacaat caaaacattt ttatgaataa      9360
     gcacattacc agataaaaaa tacattctat agccaattta cacattacat ctaactcagc      9420
     ttacgggaaa tatttatatt aaaagagaaa aaatgtataa tagaaaccac tgacaagtat      9480
     aattgtttca taacttgaga atcaaaacaa tgaccatatt atttacacta tctataaatt      9540
     ccataaaatg aagaaaaata agaagaagaa gaagaagaag ctgaacaaaa gaacacacac      9600
     aagcatatat acatattcac taacacgaac tcaaatacaa tcaaatacaa catttatgat      9660
     aatttaagga caatgcagaa taacaattag gttattaacc taattcactt taattccttt      9720
     tccttagtat ccatcccgaa taaattgtgt cctactaacc ccgagtcaac cgcgggtaat      9780
     cggtttccac cattaacatt aagttttagt ttagtacgta agtagtttta ggaaataaat      9840
     tgaagaatgc agaaaaatgc ataagccagt aaagcgcata taagaatacc caaaaccaat      9900
     ttaaactcag atgtttctct gaaaaaagtc atgtcaagat attgacccaa gtaaaagaaa      9960
     attaaacttg taaatgcgta atattgaagt agaagacaaa tttcaaattt ggcatacaaa     10020
     aggaatatga agacgtatta tgagataaag agcaaaacac tgtattaaga aaaatcagca     10080
     aagcatagtg caaaaactaa tgtaacattt attaaagagt aaacatgcag ccttctttcg     10140
     gagggggtag taa                                                        10153
//
ID   Gypsy-50_CQ-LTR repbase;    DNA;    INV; 416 BP.
XX
AC   AAWU01002291;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_CQ_;
KW   Gypsy-50_CQ-I; Gypsy-50_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-416
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 480-480 (2011).
XX
DR   Genome; AAWU01002291; Positions   29687   30102.
XX
SQ   Sequence 416 BP; 128 A; 80 C; 99 G; 109 T; 0 other;
     tgttgtgcac acggattgca caactttgca ttcttagcgt agctccaatg aatggtttgc        60
     gttaatcaca acgcacgcat tgcagctgac gctaagggaa cggacgataa atcaagtctc       120
     gttttcgtaa cattcacgca ttgatgcgtg tgtcaagaga ataggtgacc cattttctag       180
     aacattgatg cgtggatcag aaaaaaatag actaagagga ttacccaaaa gcgagggtga       240
     cgaagttaac gattccgttg gtccgtggtg caacctgttg agatgcatgg catgagtaaa       300
     aatagattaa gtgattccta ataaatatgc cctgctccga ggaatcggag tcagttatgt       360
     tcgagaagta tagtgagtca gttcctttat atcacaagtc ccaagcagat acaaca           416
//
ID   Gypsy-50_DWil-I repbase;    DNA;    INV; 6883 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   05-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_DWil_;
KW   Gypsy-50_DWil-LTR; Gypsy-50_DWil-I.
XX
NM   Gypsy-50_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6883
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1869-1869 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5798-6286] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1757..2974
FT                 /product="Gypsy-50_DWil-I_1p"
FT                 /translation="MITWDDIIREARIHAQELNKSCKCLSQNRETSQSTIE
FT                 KHSKIIIESLKNIRAVLREHYSKLSAGRKTAANAFYDDCKQKAKSVLKRYN
FT                 IEYKQTIDLESSISLEDKTKLTAEEEMDEEEPSVSLDNTKITLNKPAISPG
FT                 NAKMTQTVTDFLKMASSLIPQFDGRRENLQSFMDALNLINSLKGDHEEAAV
FT                 CLIKTKLKGHTRNLITSEQTIKEIINSIASNVKTESVASITAKIKNLPQRN
FT                 KTASQYAQEIEKLTESLEGAFIHDGTTVELAKKYTLSVATEAITKNCINNQ
FT                 VRNVLKAGIFRDMNELTTKFVDSSTAETGQANPVMHYRQYNRNGQNNYRGR
FT                 GNYQNNGYRNNNNTGGYRGNSRYNNRGRNNSNRNSSNRGNSNRGSSNNGNG
FT                 NVRLTQSNSENQ"
FT   CDS           2962..6768
FT                 /product="Gypsy-50_DWil-I_2p"
FT                 /translation="FGKPIEPCRYSEETVNVYTFNLSLSIFIKVKNENTNN
FT                 TYTFLLDTGADVSIIKEKTDPFEHIDTSNTIEISGIGEGSITSKGLTLIEL
FT                 RQNEFIIPHNFHIVGESFPIPFDGILGLDFFKTFNCQLDFSEPNDSLLLRP
FT                 NNLNFAINIPILHTCDSNTTILPARSEVIRQINIPNEKSNIVILNQEVENG
FT                 IFIGNSICSPNKTFVRILNTTKTVKILNLKTIKYESLKNYEIVQTTDDPRS
FT                 QSVIQKLKPNFPPMFKNVLEELCTKYTDVFGLENEPITTNNFYKQELRLND
FT                 NQPVYTKNYRIPHMHKEEITRQVDKLIKDKIVEPSVSEYNSPLLLVPKKGL
FT                 PGSEKKRWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCLDLMS
FT                 GFHQIELKDKSRSITSFSTSNGSYQFTRLPYGLKIAPNSFQRMMTIAFSGL
FT                 NPSQAFLYMDDLIVIGCSEKHMLKNLKDIFDICRKHNLKLHPEKCSFFMHE
FT                 VTFLGHKCTDKGILPDDTKYDVIEKYPVPTDADSARRFVAFCNYYRRFIKN
FT                 FAEHARPITQLCKKNVEFVWSEECQRGFEYLKKALIEPTLLQYPDFSKEFC
FT                 IITDASKYACGAALTQTYGDKQLPVAYASRSFTKGESNKSTTEQELAAIHW
FT                 AITHFRPYIYGRHFRVKTDHRPLTYLFSMINPSSKLTRMRLDLEEYEFTVE
FT                 YLKGKDNFVADALSRITIQELKNTKANVLKVTTRQQSRQNNLWPDDKNENT
FT                 IRQVPNDASKPKIHEVLYNDEVRKVVTLRITHDLCFLKHGKKVIARIEIGD
FT                 LYTNGNLDLGQFFQRLEKQAGILXIKQXKLAPSEKIFETFSIESFKEMGNK
FT                 TLKTLRVALLQPVTIIEKDKDKEAILSTYHDDPIQGGHTGITKTLAKVKRH
FT                 YYWKNMTRHVKDYINKCEKCLKSKTTKHIKTPLVITETPIHAFDRVIVDTI
FT                 GPLPKSENGNEYAVTLICDLTKYLVAIPVPNKSATTIAKAIFESFILKYGP
FT                 MKTFITDMGTEYKNSIINDLCKYLKIDNITSTAHHHQTLGTVERSHRTFNE
FT                 YIRSYISVDKTDWDIWLQYFEYCFNTTPSVTHKYCPYELVFGKQNNLPTHF
FT                 NSINRIEPLYNVDDYAKEVKFRLELAYSRARIMLEERKENQKHFYDNKSAD
FT                 FKIEIGDKVFLKNEAGHKLDSAYIGPFEVVEISKNNNIKIRNNKNKIQTVH
FT                 KDRLKICKNNSKKKKKKKPKEIYKIFLWIQLLTLLHSITNIKKKKRIFLRK
FT                 KICLARHK"
XX
SQ   Sequence 6883 BP; 2797 A; 1252 C; 1154 G; 1675 T; 5 other;
     tggcgaccgt gacaataggc caagacaagg cctaaggaca tcgagggacc aaggaaacag        60
     gacatcgagg accaaggaca aaattttgtg tacgtatgtg tgtgtgttag aaamaaagaa       120
     aaaaaaattt ttaagcacga aaatgagaaa cggtaacgat ggataactac tttcaaagag       180
     ttaccagacg gaacccgggc ttaagagaaa acataattga ggtgtttaga agcgaacaca       240
     gccactcccc tcaaagctcg ctaactctag tgcaaataag aaccatmtac tcggaacaaa       300
     ccgaagaaag attcccagta aaaggggaca caagaatgca aatgtgcttc ttactgagtg       360
     taccaaatat atgctgctac acaaatgcag caggtacttt ccatttctac ttgatggaat       420
     aaaaaaaaaa aaataacaca cacacacata cacacaaaaa tataaattaa caatcgaaga       480
     aaaaagmcag tgctgatgac tagcaccgaa ccgtcacatc cagaggactt ggatttcctg       540
     acggctgtac ctaccgtaca aagggacgca cccctcctcg aagaggtatt agaggtgtgt       600
     ccaaacgagg gaccacgccc actcacgata gctgagtacc gggctcgcca cgagaagcag       660
     aaggaagccc ccaaaaagaa gtctagagga ggaaagtacg ccaggctaag gcgcgagagg       720
     aagctcctcc aggacctcct ccacacagga ctggatgaca aggaccgaca gcactacaca       780
     gagtgcctca tgaacaacac agtccaactt cgccaaagag cgaagacacg caatgagtaa       840
     ataattctct tgcccctaat tttaattgaa attttatata aatattaaga acaaacacgt       900
     acgagtttgc acttgttgca cagtacacct actaaccaac cattgatagg ctattactaa       960
     aaaacatgcg taggcataga tttaatcaaa acattgttca agctgtaagc ctacgcatgt      1020
     atactcttct atctttccac gtctctggct cactgtgcaa gacacagttg agataatttt      1080
     tctttttcaa aaaaaaaaaa tgttttttca agttacatat aaataaaaga aaaacaaatg      1140
     aatccataaa gattttttaa acatttttct caataatcga aaacaggtct aaacgaccaa      1200
     gaaaaacaaa tttttttttg ctagaaagat gggttctcaa gaatccaaaa tagaccaccc      1260
     aacggctaat gtcgttaaca gcgttaaaat agtagatcac agggaaaatt tagaatatat      1320
     agggatattg ttgttagcca ttctaatatt agtagcctta aatctggcat tgaaattata      1380
     tgcaatgcat aataaaataa tcaagaaaaa atatcagagt agagcagacg gcctaaatac      1440
     agtataaaaa tgggtcgagt agaacttaaa tatttgaaca aatacgttcc attcttagac      1500
     ttcctcttta acagaggcga aaccaatcca aaatataagg aaatcaaata ctggattgtg      1560
     aataatagaa aattcaaatc agggatagcc cacttgatag aaagatccat agtagaagca      1620
     tataaccgcc taaagcgaaa aaatagaatt ttacccacct gggtacataa actatttgaa      1680
     gaacccatag agacaatcga tctctcaggg aattaattaa aaaaaaaaga gagtgtaatt      1740
     tttttttaaa caaaatatga ttacttggga tgatataata agagaagcta gaatacatgc      1800
     acaagaatta aataaatctt gtaaatgcct ctcgcagaat agggaaacat cccaaagtac      1860
     aatagaaaaa cactcgaaaa taataataga gagcctgaaa aatatcagag cagtgttaag      1920
     agaacactat agtaaactat ctgcgggacg aaaaacagcc gcaaatgcat tctatgatga      1980
     ctgcaaacaa aaggcaaaat ccgtattgaa aagatataat attgaatata aacaaacaat      2040
     tgatttggaa agttcaatat cactggaaga taaaaccaag ttaacggctg aagaagagat      2100
     ggatgaagaa gaaccatcag tgagtttaga taacacaaaa ataactctta ataaaccagc      2160
     catttcgcca ggaaacgcaa aaatgactca aacagtcact gattttttaa agatggcctc      2220
     aagccttatt ccacagtttg atggcagaag agaaaatctt cagagcttca tggacgcatt      2280
     gaatttgata aattcactaa aaggcgacca tgaggaagca gcagtgtgcc tgataaaaac      2340
     aaaactaaaa ggtcacacaa gaaatttgat aacctctgaa caaacaataa aagagattat      2400
     caacagtata gcatcaaacg taaaaacgga atcggtagcg tcaataacag caaaaattaa      2460
     aaacctaccc cagagaaaca aaacagcaag tcagtatgct caagaaattg aaaagcttac      2520
     tgaatctctg gaaggtgcct ttatacacga cggcacaact gtcgaactag ccaaaaagta      2580
     tacactttca gtcgctacag aggcaataac aaagaactgc ataaacaacc aagtacgtaa      2640
     cgtactaaaa gcaggtattt tccgtgacat gaacgaactg acaacaaagt tcgtagacag      2700
     tagtacagca gaaacaggac aggcgaaccc tgtcatgcac taccgtcaat acaatagaaa      2760
     tggacaaaat aactaccgag gtagaggtaa ttaccaaaat aacggttata ggaataataa      2820
     taataccggc ggatatcgtg gtaactcacg gtacaacaac cgaggaagaa ataattccaa      2880
     ccgtaacagc tcgaaccgag gtaattccaa ccgaggtagc tctaacaacg gaaatggtaa      2940
     tgtacgactt actcaaagta attcggaaaa ccaatagagc cctgcagata ttcagaagaa      3000
     actgtaaatg tatacacttt caatcttagc ctaagtattt tcatcaaagt taaaaacgaa      3060
     aatacaaaca acacatatac cttcttgtta gatacaggtg cagacgtatc aataataaaa      3120
     gaaaaaacag atccttttga acatatagat acttcaaaca caattgaaat atcaggaatt      3180
     ggtgaaggtt caattacttc caaaggtcta acccttatag aactaagaca aaatgaattc      3240
     ataattccac acaacttcca tatagtaggc gaaagttttc caattccatt tgatggaatt      3300
     ttaggactag atttcttcaa aacattcaat tgtcaattag atttcagtga accaaacgat      3360
     tcactattat taagaccaaa taatttaaat tttgcaataa atatcccaat attacacact      3420
     tgtgacagca ataccacaat cctcccagcg agatctgaag taatccggca aataaatatt      3480
     ccaaatgaaa aatcaaatat cgtcatctta aatcaagagg tcgaaaatgg aatatttatt      3540
     ggaaattcaa tctgcagtcc gaacaaaaca tttgtccgaa ttttaaacac aacaaaaaca      3600
     gtaaaaattt taaatttaaa aaccataaaa tatgaatcat taaagaatta tgaaattgta      3660
     cagacaactg atgacccaag aagtcaatca gtaatacaaa aactaaaacc aaacttccca      3720
     cctatgttca aaaatgtact agaagaactc tgcaccaagt atacagatgt atttggttta      3780
     gaaaacgaac caattactac aaacaacttt tataaacaag aactaagatt gaatgacaat      3840
     cagccagtat acacaaaaaa ttacagaata ccacacatgc ataaagaaga aataactaga      3900
     caagtcgata aactcattaa agataaaata gttgaaccgt cagtgtccga gtataatagt      3960
     ccgttattac tggtaccgaa aaagggttta ccaggatcag aaaagaaacg atggcgattg      4020
     gtaatagact atcgtcaaat aaacaaaaaa ttgttgtccg ataaattccc attaccaaga      4080
     atagacgata ttcttgatca actaggcaga gccaaatatt tttcatgcct agatttaatg      4140
     tccggttttc accaaataga actaaaagat aaatcgcgga gcattacgtc attttccacc      4200
     agcaatggat cttatcagtt tactagacta ccgtatggtc tgaaaatagc accaaattcc      4260
     tttcaaagaa tgatgacaat tgctttctct ggattaaatc cgtcacaagc attcctttac      4320
     atggatgact taatagtcat cggctgttct gagaaacaca tgctcaaaaa cctaaaggat      4380
     atttttgaca tatgcagaaa acacaaccta aaactgcatc cagagaaatg ttcattcttc      4440
     atgcacgaag tgacattctt aggtcacaag tgtaccgaca aaggaatatt gccagatgac      4500
     accaaatatg acgtcattga aaaataccca gtaccaacag atgctgatag tgctagaaga      4560
     ttcgtagcct tttgtaacta ttacagacgt tttattaaaa acttcgcaga acatgcacgt      4620
     ccgataacac aactgtgtaa gaaaaacgta gaatttgttt ggtctgaaga atgccaaaga      4680
     ggatttgaat atctgaaaaa agccttaata gaacccacac tgctgcagta tccagatttt      4740
     agcaaagaat tttgcataat aacagatgct agcaaatatg catgtggagc agcactaact      4800
     caaacttatg gcgataagca gttgccagta gcatacgcat cccgttcgtt cactaaaggt      4860
     gaaagtaata aaagtactac tgagcaggaa ctagctgcga tacactgggc tattacacac      4920
     tttcgcccat atatatatgg cagacacttc agagtcaaaa cagaccatag acccctaacg      4980
     tatttatttt ctatgataaa tccgagttca aaattaacaa gaatgagact tgatctagag      5040
     gaatatgaat ttacagtaga atatctgaag ggaaaagata attttgttgc ggatgcatta      5100
     tcccgcatta caatacagga actaaaaaac acaaaagcaa atgtcctgaa agtcactacc      5160
     aggcagcaaa gtagacaaaa taatctctgg ccagatgata aaaatgaaaa tacaattagg      5220
     caagtaccta atgatgcttc taagcccaaa atacatgaag tactctacaa tgatgaagta      5280
     cgaaaagtag tgaccttgcg cataacacac gatttatgtt tcctcaaaca tggaaagaaa      5340
     gttatagcaa gaattgagat tggagatctg tacaccaatg gaaatctaga cttaggtcag      5400
     ttttttcaaa ggcttgaaaa acaagccggt atacttgama tcaagcaast caaattggca      5460
     ccgagtgaaa agatctttga aacattttca atagaatctt ttaaagaaat gggcaataaa      5520
     acattgaaaa cattaagagt agcgctactc caaccggtga ccattataga aaaagataaa      5580
     gataaagaag caatattgtc tacataccat gatgatccga tacagggtgg ccatacaggc      5640
     attacaaaaa ctttggccaa agtaaaaaga cattattatt ggaaaaacat gacacgtcat      5700
     gtaaaagact acattaataa atgtgaaaaa tgcctaaagt caaaaacgac aaagcacata      5760
     aaaacaccct tagttattac agaaaccccc atacatgctt ttgatagggt aatagtagac      5820
     accattggtc cattaccaaa atccgaaaat ggtaacgaat atgcagtcac tctaatatgt      5880
     gacttgacga aatacttagt agcaatacca gttcccaata aaagcgctac aacaatcgcg      5940
     aaagctattt ttgaatcctt cattctgaag tacggtccaa tgaagacgtt cattacggac      6000
     atgggaacag aatacaaaaa ttcaataata aatgacttgt gcaaatattt aaaaatagac      6060
     aacattacgt ctactgcaca ccaccaccag accttgggta ccgttgaaag aagtcatagg      6120
     acattcaatg agtacattcg atcatatata tcagtagata aaactgattg ggacatatgg      6180
     ttacaatatt ttgagtactg ttttaacaca accccgtcag taacacacaa atactgtcca      6240
     tatgaacttg tatttggtaa acaaaataat ttaccaacgc attttaatag cataaataga      6300
     atagaaccat tatataacgt agatgattat gctaaagaag ttaagtttag attagaacta      6360
     gcatacagta gagctagaat aatgttagag gaacgtaagg aaaaccagaa acatttttat      6420
     gacaataagt cagcagattt taaaatagaa ataggagata aggttttctt aaaaaacgaa      6480
     gctggtcata agcttgactc agcctatata ggacccttcg aagtggtaga aatatctaaa      6540
     aacaacaaca taaaaattag gaacaataaa aataagatac aaacagtaca taaggatagg      6600
     ttaaaaattt gcaaaaataa ttcaaaaaaa aaaaaaaaaa aaaaaccaaa agaaatatat      6660
     aaaatttttt tatggattca actactaaca ctacttcatt ctattacgaa tataaaaaaa      6720
     aaaaaaagaa tttttttgag aaagaaaatt tgtctggcca gacacaaata aaacaatttt      6780
     tctaacaaac atacatacat tactattaat caatcattaa ttatcattag tagtaattaa      6840
     taaataactc cataatatta cgttattttc taaaaagggg agg                        6883
//
ID   Gypsy-50_DWil-LTR repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   10-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_DWil_;
KW   Gypsy-50_DWil-I; Gypsy-50_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-509
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1870-1870 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 509 BP; 189 A; 100 C; 75 G; 145 T; 0 other;
     tgtagtatat ccataccaaa aatcattcaa cacaaagagc tcaacttgta acactttgtt        60
     gcaagtataa acaatcaaat atgtacgcaa taaaacataa gtgtgcactt gaatatgttt       120
     atgtgtatac attaatatat attcacataa acatactcac ataaatatac agctaaacat       180
     gttcatatat gtatgtacat ttatatatgc acatacatat attcatatga gcagcaatgc       240
     acaggcgtaa catgagctag ggccaagcca gcgtgtgaac gctgaccaag cactttgacg       300
     caagcgccct aaataatatg tatgtatgta ctgacactct ccctctcttt tgtagctgtc       360
     gcctaagtcg cagcataaga atatctatgc aacaataggt taagcaaaag aatattattg       420
     gaataaaaat caatctgaat attaccacca accaacactg acgtgttagt tcttcattaa       480
     ttaaatcaaa gtggaacccg gtcattaca                                         509
//
ID   Gypsy-50_LMi-I repbase;    DNA;    INV; 8225 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8225
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(494..1093,1355..1732,1860..2552,2694..3089,
FT                 3232..5514,5435..6505)
FT                 /product="Gypsy-50_LMi-I_1p"
FT                 /translation="MFKVYNMEENKFEHEVLLDKREGECFDNVNTCKLNDI
FT                 VNVNGEGEDSSFKSSGEASSKIVMRVNVVGDEVSPISLAVFEPGSNGRNID
FT                 LLCSTRIKFNDSEINVENVWGYGPEDADCNSANSVPEGPLNETDKSDAIGG
FT                 DDVIMAFLRKMNDNINGMNNNMNNIRGTVEQTTNRMEIMFKEIGVINDNLI
FT                 KLDQKIKNEETVEESCNKKIRTVDLEAKDLLKKFHGSCVLGQNHVMVFCED
FT                 RVKDVSQKCEDNRLKIVKFCSDNYEELKGKIHQISSSFTSKVETKVNKKCV
FT                 AAVGEDITKVQNSVDTKLNEIEQEVKETEISKVRCGEDSWAADVAETCTSW
FT                 EDFKKQYIEKFWSQRERNLFLQAFTSGSVYDSYQGTMRQFCQEWARKAKYL
FT                 SAEMKAPPVLIGNLINKLPERIRCMLLPAPKNDVDDFLNYLEEVERIDSKE
FT                 RNYSWNGGQIQNHFQTNGTYYENNNRNRGTSGNQNNSQGNRGSGFEGNQRN
FT                 NWGPRHNNGGNFGNHQGNHWEQRNSNEGNFGNNQGFGNSRTMMDIFGIRGI
FT                 STEIRVIIGEPWVNNXAHSHGXTTNYNNRHCNXVNRHKPNERNKVKXVEIX
FT                 GPLEDKVVGRNXERMAIENKKGVXRSEERNKVEENESXMDSDVIRXLQSDM
FT                 KVSGDVLPEDSRGEXIVEXWEWKTKKKXVVXWAWGMGRILFQRGLVGEXEE
FT                 EDENXEMXECTFGDDGELVRIKEVVGXVVGEDIIQWRETETQKEEITVCHI
FT                 TRVGEKFEDLLEDLSRKRVSEDLLFEEGEVTEQEMVWHPVVTVKVGDLSVK
FT                 CLLDSGSEINGVSQKFYEYVQEKEGVVVLPVSGMRIVGATGKASKVIKQEI
FT                 LINIELAGQMLECKFYVIPDLSIEMILGTEFLGKYQVNMNFACGEFNFKQN
FT                 GEVFNVSFVEKMGDQQQLDIDLPLRCIFGENRVFVTEEEETITDIRSKVEG
FT                 VEDLNGCQRKDLEEVLMRNRRVFSERPGLVQSFECKLKIKEHAPFFRTPYD
FT                 IPVSKKEAVSREIKRMLDWGIIERSNSHYNNPIVTVKKKNGSVRVVLDARW
FT                 LNEIVIGEGDRPAKIDELLQKFHGAKYLSSFDVTCGYWNIKLAEESRQYTA
FT                 FLHEGRSYHYCVVPFGLNLSVCVFIRALDKVLGDELLKKVTVYVDDILVAN
FT                 SNWFEHCQHINEMLNAVYRGGMKLNLKKSEFVKKEVIFLGHKINNQGIHPN
FT                 PEKLKAIADFATPRNKRDLKSMFGLFGYYRKFVGDQSFNQPCLSNLLKKNA
FT                 IWKWTEECEVAFQKLKKELIESKILHHPDFSLPFGMSTDASMCGLGVEIFQ
FT                 LVKTEGELEHRTIAFASRTLHSHEKNYYVTELEALAVVFGFQKFENYLLGH
FT                 ETVVYTDHKALSFLKQSRLKHPRLTRWALYLQQFKIEIRYIKGKDNIIADN
FT                 ALSRMPIGLKEDEVGETADEGIRLFYIQGVKEEKNYKKMKLGKQQMRVYVY
FT                 FIFRGSKKKKIIRRICKDLRREQNGDPSLKLVKEYYNSGEAPKVKQYYKIH
FT                 KGVLFRRKTLDKEEWKLCFPEQHVDKLIDLIHESYGHYGTRKVIAKLQETV
FT                 SFNNMWRKVKKRIECCDKCQRVKSTTVPSHGLMHPVLPTKPKELVAVNLLG
FT                 PLPTSSGGCKHIFVVLDTFSKYVKLYPIKRANTKTIVEKLDTDYFTNIGVP
FT                 EALLSDNGPQFISERFMQCMGLKKIKHIRISTYFPQGNMSERVMKEINRLC
FT                 RTYCNKKHTAWANHIQQFESIINNLWNESTGFAPCELMFGIKPTNIISEEV
FT                 EFPTSSELTQDEKLELAKEMMSKKAGARKQRHDRVK"
XX
SQ   Sequence 8225 BP; 2843 A; 1044 C; 2039 G; 2268 T; 31 other;
     atttgtggcc caggtgagaa tcattttgtg caattccgat attcacacta tgattgaact        60
     cacgagactg tagaacaatt gctaggaatc gtatcacaat gaatttgtga gacttaacga       120
     agtataggca cgtggcaaga ggggggtgca acgttaaaat aatgaacgca cagagtacga       180
     gtgaatttag aaattttgta aacttttgtt tgatgcatta attgaacttt gaaaaaggca       240
     tcatggcagg aagaagtatt aacgaggacc aatggtgaag agagacaacg aacgaccatc       300
     atgaatcagc agccaatcag caggtagcgg agcaaaacta cgaagagacg gccgagcaga       360
     ttgtttttga aaaaactgga tcaacagctg atcagtgcca cgcgaaaagc gacagcagta       420
     tatcagcaac aacgcacgaa aacaactaag aacaggtata taaacactgt catatcacct       480
     aaatatttgt cgtatgttca aagtgtacaa catggaagaa aataagtttg aacatgaagt       540
     gttgttggac aaaagagagg gggagtgttt tgataatgtt aatacatgta aattaaatga       600
     tattgttaat gttaatgggg agggagaaga cagcagtttc aaatctagtg gagaagcctc       660
     atctaaaatt gtaatgagag taaacgtagt tggtgacgaa gtgtctccga tttcgctggc       720
     tgtatttgaa ccaggcagta atgggagaaa tattgatttg ttatgtagca caagaattaa       780
     atttaacgat tctgaaatta atgttgaaaa tgtgtggggc tatggaccag aggatgcaga       840
     ttgtaatagt gcaaattctg tacctgaggg tccacttaat gagacagata aaagtgatgc       900
     tataggaggg gatgatgtta taatggcatt tttgaggaaa atgaatgata atataaatgg       960
     catgaacaat aacatgaata atattagggg cacagtagag caaacaacca acagaatgga      1020
     aataatgttc aaagagattg gtgtcattaa tgacaatttg ataaaactag atcaaaaaat      1080
     aaagaatgag gaatgagttg taaacgtgga cctgccgcga cagcgactcc tctgctgcta      1140
     tggtgcccaa taacaacaca aattgttaag atacctcctc cacagctata gatagttctg      1200
     tggctccatc tctgcccaat ctgacaatgc gctaacagcg cgaaacgcct tattggagaa      1260
     taaaatattg caacagagac tgaacagttt ttaattattc aacactgttg ctgcaccagc      1320
     cgccaccacc accatccatc atggaatgga atgaactgtt gaggaatctt gcaataagaa      1380
     aatccgcact gtagatctag aagcgaaaga tttgttaaag aaattccatg gaagttgtgt      1440
     cttgggacaa aaccatgtga tggtattttg tgaggataga gtgaaagatg tttctcaaaa      1500
     atgtgaggat aatagattga agatagttaa gttttgttca gataactatg aggagctgaa      1560
     gggcaaaatc caccagatca gcagtagttt tacatcaaaa gttgaaacaa aggtaaacaa      1620
     aaaatgtgtt gctgccgtgg gggaggatat tacgaaagtg caaaattctg ttgataccaa      1680
     gttgaatgaa atagaacaag aagtgaaaga gactgagata agtaaagtaa ggtaggtttg      1740
     gggacaactc aggtggggcc agcacttaat aaaatgttcg atgtttttga gccaagtgga      1800
     ccaatacacc tagtagaatt cctgggggaa tttaagagtt tacccaatta tatgagtgat      1860
     gtggagaaga tagttgggca gctgatgtgg cagagacatg cacatcatgg gaagatttta      1920
     agaaacagta tatagagaaa ttctggtcac agagggagag gaacttgttt ttgcaagctt      1980
     ttacaagtgg tagtgtgtat gattcatatc agggcactat gaggcagttt tgtcaagaat      2040
     gggcaagaaa agcaaaatat ctgagtgcag aaatgaaggc tccaccagta ctgataggta      2100
     acttgataaa taagttgcct gaaagaatta ggtgtatgtt gttaccagct ccaaagaatg      2160
     atgtagatga cttcctaaat tatttggaag aagtagaaag gatagactca aaggagagaa      2220
     attactcatg gaatggggga caaatccaga atcatttcca aacaaatgga acatactatg      2280
     agaataataa taggaatcgt ggaacaagtg ggaaccagaa caacagtcaa ggaaaccgtg      2340
     gaagtggttt tgagggtaat cagaggaata attgggggcc acgacacaat aatgggggta      2400
     attttggtaa tcaccaagga aaccattggg aacaacgaaa cagtaatgag ggtaattttg      2460
     gtaataatca agggtttggg aacagcagaa caatgatgga catttttgga atcaggggca      2520
     tcagtacaga aatcagagta ataattgggg agtaaataga cacaatggga gtagtaatga      2580
     atgaggaggt ggcagaggtc aacatcatgg tgagaatgga aattttggtc aaaaccgttt      2640
     aaactaagaa aggcgcaggt tggggttcga acctgggcag ggaacagaaa taaccatggg      2700
     taaacaacag sgcacacagt cacggkamaa ccacgaatta taataatmga cattgtaatk      2760
     tagtaaatag acataaacca aatgaacgga acaaagttaa atkagtagaa ataamtggtc      2820
     ctctggaaga taaggtagtt ggtagaaatw atgaaaggat ggcmatagaa aacaaaaaag      2880
     gggtmcmtag atcagaagag agaaacaagg tggaggagaa tgagtcckta atggatagtg      2940
     atgtaatacg tawgttgcag tcagatatga aagtaagtgg tgatgtactg ccagaagata      3000
     gtagggggga gmtgattgtg gaawagtggg agtggaagac gaaaaagaaa tkagtggtgt      3060
     tktgggcgtg ggggatgggg agaatcttgt aagtaaatgt ttggatacca gtgaaaacck      3120
     tgaacttttg ggagttgtta aaaaggtgag atgtttatct ttgtgggtta aagaggaatt      3180
     aagggatcaa gtaattggca aaatgtttmg tggagagggt gagagcagtg attccaaaga      3240
     gggttagtag gggagamtga ggaggaagac gaaaatmasg aaatgkttga atgtactttt      3300
     ggwgatgatg gtgagttggt tagaataaaa gaggtggttg gakaagtagt gggggaggac      3360
     attatacaat ggagggaaac agagacacaa aaggaagaaa ttactgtatg tcacattacc      3420
     agagttggag aaaaatttga ggatctatta gaggacttgt ctagaaaaag ggttagtgag      3480
     gatttattgt ttgaagaggg agaagtaaca gaacaagaga tggtctggca tcctgtagtc      3540
     actgtcaaag tgggagatct gtctgtaaaa tgtttattgg atagtgggag tgaaataaat      3600
     ggggtatccc aaaagtttta tgaatatgtc caggaaaagg aaggagtggt tgtgttacct      3660
     gtgtctggaa tgagaattgt aggggctaca gggaaagctt caaaagttat taaacaagaa      3720
     atattaataa atattgagtt ggctggtcaa atgttagaat gtaaatttta tgtgatacca      3780
     gaccttagta ttgaaatgat cctgggaact gaattcttgg gaaagtatca agttaatatg      3840
     aattttgctt gtggggaatt taattttaag cagaatggtg aagtgttcaa tgtgtcattt      3900
     gtggaaaaaa tgggtgatca gcagcagcta gatatagatt tacctttgcg gtgtattttt      3960
     ggtgaaaacc gtgtttttgt aactgaggaa gaagaaacca taactgatat aagaagtaag      4020
     gtggaaggag tagaggacct aaacgggtgt cagaggaagg acttggaaga ggtgttgatg      4080
     agaaatagga gagtattttc agaaaggcct gggttagttc agagttttga atgtaaacta      4140
     aaaattaaag aacatgcacc attcttcaga acgccatatg atatacctgt atccaaaaaa      4200
     gaagctgtca gcagagaaat aaaaagaatg ttagattggg gtataataga aaggtcaaac      4260
     agtcattaca acaatccaat tgtaacagtg aagaaaaaga atggaagtgt gagagtagtg      4320
     ttggatgccc ggtggttaaa tgaaattgtg attggagagg gtgatagacc tgcaaaaatt      4380
     gatgaattat tgcagaaatt tcatggagca aagtatctgt cttcttttga tgtaacctgt      4440
     gggtactgga acataaagtt agcagaagaa tctagacaat acactgcttt tctgcatgaa      4500
     ggcagatcat accattactg tgtggtacct ttcggcttaa atttatcggt gtgtgtattt      4560
     ataagagcgt tagataaagt tttgggggat gaattgttga agaaagtgac agtgtatgtg      4620
     gatgacattt tggtagcaaa ttcaaattgg ttcgaacatt gccaacatat caatgaaatg      4680
     ttaaatgctg tttatcgagg gggtatgaaa ttgaatctga agaagtcgga gttcgtaaaa      4740
     aaggaggtta tatttttggg acataagatt aacaatcagg gtatccaccc taatcctgag      4800
     aaactaaagg ccattgctga ttttgcgaca ccaagaaata aaagagactt gaaatcaatg      4860
     ttcggtttat ttggatacta tagaaagttt gtaggggatc aatcttttaa tcaaccttgt      4920
     ttaagtaact tgctaaaaaa gaatgccatt tggaaatgga ctgaagagtg tgaggtagct      4980
     tttcagaaac taaagaagga attgatagaa agcaaaatac tacatcatcc tgatttttcc      5040
     ttgccgtttg gtatgagtac ggatgcaagc atgtgcggtc tgggggtgga aatttttcag      5100
     ttggttaaga cggagggtga attggaacat aggaccattg cctttgctag cagaaccctg      5160
     cactcccatg agaagaatta ttatgtaaca gaattagagg ctttggcagt agttttcggg      5220
     tttcaaaagt ttgaaaacta cctcttggga catgagacag tggtatatac tgaccataag      5280
     gctttgagtt ttctgaaaca gagtaggctg aagcacccaa gattaaccag atgggctctc      5340
     tacctgcaac aatttaaaat agagatcaga tacattaagg gaaaagacaa tataatagcc      5400
     gataatgcct tatctagaat gcctatagga ctgaaagaag atgaagttgg ggaaacagca      5460
     gatgagggta tacgtttatt ttatattcag ggggtcaaag aagaaaaaaa ttattaggag      5520
     aatttgcaag gatttgagga gggagcagaa tggggatcca agtttgaaac tggttaagga      5580
     atattacaat tcaggggaag caccaaaagt aaagcaatat tataaaatcc acaagggtgt      5640
     tttgttcagg aggaaaacgt tggacaagga agagtggaaa ctatgtttcc ctgaacaaca      5700
     tgtagacaaa ctaattgatt tgattcatga aagctatggg cactatggaa caaggaaggt      5760
     aatagctaag ttgcaggaaa ctgtcagttt taataacatg tggaggaagg tgaagaaaag      5820
     gatagaatgt tgtgacaagt gtcaaagagt aaaatctaca actgtgccat cccatggttt      5880
     aatgcatcct gttctaccaa ctaaaccaaa agaattagtg gcagtcaatt tactaggccc      5940
     gctcccaaca tcttcggggg gttgcaagca catatttgta gtattggata ctttttcgaa      6000
     atatgtcaaa ctgtatccta ttaagagagc taatactaag accattgtag agaaattaga      6060
     taccgactat ttcacaaata taggggttcc agaagctttg ttgtctgata atggaccgca      6120
     attcatttca gaacgattca tgcaatgcat ggggttgaag aaaatcaaac acataaggat      6180
     ttcaacctac ttcccccaag gtaatatgag cgaacgggtc atgaaagaaa ttaacagact      6240
     ttgtagaacc tattgcaata aaaaacacac ggcatgggca aaccatatac aacaatttga      6300
     aagcatcatc aataacttat ggaatgaatc aaccggtttt gcaccttgcg agcttatgtt      6360
     tgggattaaa ccgaccaata ttatcagtga agaagttgaa tttccgacgt cgagtgaact      6420
     tactcaggat gagaaattgg aattagctaa agagatgatg agtaaaaagg caggggcaag      6480
     gaaacagaga catgacaggg taaaataggg taaaacctac caagtttaaa ttgggccaat      6540
     tggtgttggt gaagaagaaa gagaaatcca gtaaattaaa tgatgagata aagaagttct      6600
     tacacatcta ccatggacct ttcaaggtgg taaggatcgc tcatgaaaat gcttatgagt      6660
     tggcctatac aaagtcaaat agggtttacg gactgaagaa tattactgat ctgaaacctt      6720
     ataggtttgc ggtccgatgt ttactgaagg aggatccatt gaaagaggtt tttctgaggt      6780
     tgggacaact acattatgat gatagaatga ggaaagttta tttgaaggaa tgattaaaat      6840
     atttgaagtt tgtgtatgaa tatgatatgc aagggcagtg gtctagttac aaagcaaaga      6900
     aaaagtctct ctataaattg agaagttagt gaatattgaa ctggtattgt gctgtgttgt      6960
     caataaaata cattttgagg atgaagttgt tgccagagag tgtattcttg gaaacaatga      7020
     taattagagc agaggggtat tattgaagtt taagaatcat tggagcatat tgacttatgg      7080
     agagatgtga gttgggggtt aggtaacttt gtgcattgga agaattttgt gaggtaccct      7140
     ttgtgggtgg ggattttatg tgacgaatca ggaagaggat acacactggg atgtaaatac      7200
     acaactaact agtgtatggg ggtaacatct ggcaagtatg gacacctgtt tgttgacgtt      7260
     ggaatgaaat aagggtatga tgggaattgt agctgcacac acgacaaatg taaatgtaga      7320
     gtgatgggat cttggtaatg gttggatttt gcacaacttt gaagtttctt ctcctgtcaa      7380
     gcatagcaga cacaagtact actaatacta gtaataatga tttttgtatt ttggcaatgt      7440
     gaagttaaag gttgatctgg ttgaggagct gattaataga ctgagtcata aaaaggttgg      7500
     acaacttaaa gtatcacact atgagggaca gctttcattt ttttcttttt ctaaataaat      7560
     atattgkaat ttagttagtt aagtacagtt ttgtaagtgt caatttgttt tagattcatg      7620
     acatatatgt gtaattttgt ccwttttttt tccttgtgtt aggtaacggt gtttagttat      7680
     ttttactaaa gtaaagtttt ttttttttct tcttgtaaat tttgcatggc acaccatggg      7740
     agcttcattg tatctgsaaa aaggatgaac tggtttgaaa cccaaagtgc agtgaagttt      7800
     tggacacacc tactgtgtga tagtgagaaa aggacaagat gccatggact ggaagttgtt      7860
     ttctttcttt tgatgctcgc tgttttggtg aagtacctga cacaggcata ttaataattt      7920
     tgtcaaaact gttaatataa ttttgtcaga tgttttgtat agaacttatt gagtggtgat      7980
     gagtgtaatt ttgtaatatt tcatgttatc aaggaaatta atagtgatca gttcccataa      8040
     gtttggattt ctgtatgaag tatgataata attagggatw tcgaggggtt wtctmcaggt      8100
     aatttgacct tcagtgtgat gtttattttt caaaaaggtt tatgactaag actaattttt      8160
     ctttgacatt gttttaacca tttagttatg taccatacct aattgatgaa aacaatgggg      8220
     ggtag                                                                  8225
//
ID   Gypsy-50_LMi-LTR repbase;    DNA;    INV; 689 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-689
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 689 BP; 246 A; 82 C; 151 G; 202 T; 8 other;
     tgtaagttag cagatatggc ttgtgatcat agttttgcta cttttgtgaa tgttcataat        60
     tgaaaaaggg gctaattaaa agacatcagg ctaaagtagt tttcaaatca attgcgtgtt       120
     ttcaaatatg tgaatgaaaa aaaacggaat attttcaaat ttggtacggt acttagatca       180
     aggaagggga catccggggt tttgacttta cgcataaaat agttcctacc tatttaacat       240
     cattttttta tattgaaaat agtagaaaat aagtccaata tcaatttaaa ttagcttaag       300
     aaaaatgtat caaattagtm taagtaaatt ataaagtatg agttatttts ctgttgtgta       360
     aaagtactgt acgmaaacca gtgggaaagg ccggcggaag gatacaagta aaaggaacag       420
     ttagctacga agcgaggcgg gaagacggga agatggaacg gtgttgagaa atgcgtkaga       480
     gactatagaa aakaaccttg tgtaatkatt gattatagct aaatagacac ttaggaaagt       540
     attaaacgta atcgaaacca aaagtccaag tgttatttat tattgtgsta gtaagcctgt       600
     tgattwcagt gttcccggtt accgtgtgtt tccggaaaag tgagaccgag aacgagatag       660
     taatagaggt aagaacctgc ttagttaca                                         689
//
ID   Gypsy-50_MSe-I repbase;    DNA;    INV; 4641 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4641
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 927-927 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..4590
FT                 /product="Gypsy-50_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPTTRLNTKKTDGTSNESSDDDERRLPSDEPTPSGT
FT                 TAVPNSTRHDKLIGISEEQLARLISGVISRVGTPSCNSDRNEPSPSTPAAS
FT                 CASTPSPSGNFSRCTARFSGAARSADELEAFIDSVAVYKECVAVSDEHALR
FT                 GIAMLLTGEAAVWWRGVKDSISTWDEAVRRLRAMYGTPRPAHKILREIFAR
FT                 EQGDERTDTFISRVRADLARLPYSVPEVMQLDIVYGLLNRKIRKRVTRECV
FT                 SAGLDCLLERARYVEESLSEVSLSNLPKPSENIKPSVGNVVNPIHSSSISR
FT                 NDDSPNSANMPKRIRPRCSACRRFGHVAEECRTKRHDAKTAEATSASSNRS
FT                 PLSCYGCGRVGTIRSRCETCNSSTKGKDRDNVEFHSADIDCIERSCPTVRV
FT                 VIADRAGVAVLDTGATRSIASPGLYNILVDSGVKFEATHRHVTLADGSQRI
FT                 REVLIGETLVVLGGRAIPTSFIVLPGANNRTLLGRDFILQADITLDLPQGV
FT                 WNFADSPEQKNQFVDYREDDSPLGNPAELMHVDEVDLALREDEGRALTPAQ
FT                 KVELNRMIASKIDRFSLEGPPTSYATHRIRVSDDQEPIASPPYRLSQGKKE
FT                 ILHKELQKLLQADVIEECESPWAANVVLVTKKDGGTRLCVDYRKLNAVTEP
FT                 DRYPLPRIEDVLHAAKTTSFMTTLDLQSGYFQVSVVEADRDKTAFVTPSGT
FT                 FRFKRMPMGLRNSGATFQRLIDRFKANLTVREKTSGRAGATGAPDELQTSR
FT                 SVTILAYLDDLIILSSTFEQHLEDLEAVFERLAVFDLRVNRKKSCFACDSV
FT                 KFLGHVIVPGGLQVDPEKTSAITKMLPPNNIKQLKSFVAMTSWFRRFVPNF
FT                 ASVAKPLTDLLKKNAEWVWREGQQAAFQHIKQLLATAPILRQADESAPFTL
FT                 STDSSSYCLGAVLMQGEGPEERPVEYASRLLEPAERNYTTTEREALAVVWA
FT                 VNKFRGYIEGSQVIVKSDHQPLRWLMSLKSPSGRLARWALTLQAYNLQIQY
FT                 TPGRSNVIADALSRPACCDEDSKSCEMCQVIIDMPQRSPADVRANQIKDPE
FT                 LQKIIEDMESDDVDFRGRAWSSRGYVLSDGVLYRYGPEADGDESACLVVPQ
FT                 HEREKVLLDFHNAPTAGHLGVDRTYMRLSTRYFWPGMKAQIAAHVRGCVDC
FT                 QRYKVDNRKPAGLLQTPAMSRRFEVMSVDLFGPLPQTTSGNRWILIVEDVC
FT                 SRWVELFALKAATSADAAKTLTQEVFLRYGVPRRMISDNGVQFVSEVMQQA
FT                 CHALGIKQDLTPLYHPEANPIERKNRDLKPQLAILVGQDHASWDEHIAAIR
FT                 FAMNSAVTASTGHSPAYLTFGRELRAPADVLDDMRAIISSEIAHTAITPYL
FT                 KRLSCVLVEARDVHEKAQAAQKLHADQGRRPAPDYKVGDFVLLKTQGMNDT
FT                 DRGHSSKFVPRRDGPYRIKSVTSPTTYRLESLTGEDIGKYHASHLSPYVGP
FT                 VIAPVRGKRRRGRPRKV"
XX
SQ   Sequence 4641 BP; 1162 A; 1231 C; 1292 G; 956 T; 0 other;
     attgcgccca actagtggca acaaccgcga aaccgagtgc tagtgaacgc ggcacgtgta        60
     acgtaaattt gtgaaacaag cgtgttaggt accgcgtagg tacgccgcgc atttcttcca       120
     ctctttatca agatcgaagc aaacatgccg ccgacgacac gtttgaatac aaagaaaacg       180
     gatggaacga gtaatgaatc ttccgacgac gacgagcgac gcctaccaag cgacgagccg       240
     acgccgtcgg gtaccactgc ggtgccgaac tccacgcgcc acgacaagct aattggaata       300
     tcagaggaac aactagcgag actgatttcg ggcgtgatat cgagagtggg cacaccatcg       360
     tgtaacagcg acaggaacga accttctccg agcacacccg ccgctagttg cgccagcaca       420
     ccaagtccgt ccggcaactt ttcccggtgc acggcccgct tcagcggcgc cgcccggagc       480
     gccgacgagc ttgaagcatt tatagatagc gtggcggtgt ataaagaatg tgtggcagtc       540
     agcgacgagc acgccctgcg cggcatcgcc atgctgctga cgggcgaagc cgccgtgtgg       600
     tggcgcggcg tgaaggactc catctcgacg tgggacgagg cagtacgtcg tctgcgtgct       660
     atgtacggca cgcctcgccc ggcccacaag atactccgtg aaatatttgc gcgcgaacaa       720
     ggggacgaac gcacggatac gtttatatcg cgagtgcgcg ctgacctcgc gcggttaccg       780
     tatagcgtcc ccgaagttat gcagttagat attgtgtacg ggttgttaaa tcgtaaaata       840
     agaaagcgtg taacacgcga gtgtgtgtcc gcgggactcg actgcctact cgaacgtgcc       900
     aggtatgtag aggaatcgct gagcgaggtg agtctttcca atttacctaa acctagtgaa       960
     aacattaagc cctcagtcgg caatgttgtt aaccccatac acagtagttc gatttcgcgt      1020
     aacgacgact cccccaatag tgctaacatg cccaagcgta tccgtccgcg atgctccgcc      1080
     tgcagacgtt tcggacacgt cgcagaggag tgtagaacga aacgtcacga cgccaaaacg      1140
     gccgaagcga cgtcggcttc cagtaaccgt agtcctttat cttgttacgg ctgcggccgt      1200
     gtaggtacca tacggtcgag gtgcgagacg tgcaatagta gtacaaaagg gaaggaccgt      1260
     gataacgttg agttccatag tgccgacatt gattgtattg agcgatcgtg cccaaccgta      1320
     cgcgtcgtga ttgccgatcg cgcgggcgtc gccgtgctgg ataccggcgc gactcgcagc      1380
     atcgcaagtc ccggcctcta caacatactt gtcgacagtg gagttaagtt tgaggcgact      1440
     caccgtcatg taacactcgc cgacggaagc cagcggatac gagaagtact cattggcgaa      1500
     acattagttg ttttgggtgg acgggccatc cccacatcct ttatagtgtt accaggggcg      1560
     aataatagga ccttactagg cagagatttt attctacagg ccgatatcac cctcgactta      1620
     ccacagggcg tctggaattt cgccgactcc cctgagcaga agaatcagtt cgtggactat      1680
     cgagaagatg actcaccgtt aggtaacccc gctgagctga tgcacgtcga cgaagtagac      1740
     ctcgcgcttc gcgaagatga aggtcgtgcg ttgacgccgg ctcagaaggt ggaactcaac      1800
     cgaatgatcg cgtcgaagat agatcgcttc tcactcgagg ggccgccgac gagttacgct      1860
     actcaccgaa ttagagtcag cgacgatcaa gagcctatcg cctcgccgcc ctaccgtctc      1920
     tctcaaggca aaaaggagat cctgcacaag gagctgcaga agttgcttca ggccgacgtg      1980
     atagaagaat gcgaatcgcc ctgggctgcg aatgttgtcc ttgttaccaa gaaggacggg      2040
     ggcacccggc tttgcgtgga ctatcgcaag ttgaacgcgg tgaccgaacc tgatcggtac      2100
     ccgctaccca ggatagaaga cgttctccac gccgccaaga ccaccagctt catgaccacg      2160
     ctcgacctgc aatcgggtta cttccaggtc agcgtcgtcg aggctgatag ggataaaact      2220
     gctttcgtga ctccatctgg gacgtttcgt ttcaagagga tgcccatggg actcaggaat      2280
     tcaggtgcca cgtttcaaag gttaatcgac aggttcaagg ccaacttgac cgtcagagaa      2340
     aagacatcgg gaagagctgg agctaccgga gcacctgacg aacttcagac tagcagatcc      2400
     gtcaccatat tggcttatct cgacgacttg atcatcttgt cttcgacatt cgagcaacac      2460
     ctggaagacc tggaagctgt gtttgaaagg ttagctgtgt ttgacctaag agttaatcgc      2520
     aaaaagagtt gctttgcgtg cgactctgta aagttcttgg gacacgtcat cgtccctggc      2580
     ggacttcaag tggacccaga gaagacttcg gcaataacga agatgttacc gccgaataat      2640
     atcaagcaac tcaaaagctt tgtggctatg acgagttggt ttaggcgctt cgtgcccaat      2700
     ttcgcatccg tagcaaaacc acttactgac ctcttaaaga agaatgcaga gtgggtatgg      2760
     cgcgaaggtc aacaagctgc tttccaacac atcaagcagt tacttgcgac agcccctata      2820
     ttgaggcaag cagacgaatc agcacccttt actctaagca ccgatagcag cagctactgc      2880
     ctcggagcag tattgatgca gggggaggga ccggaggagc ggcctgtgga gtacgccagt      2940
     cgcttgctgg aaccagctga acgtaactat acgactaccg aacgcgaagc tttagccgtg      3000
     gtttgggcag ttaacaagtt ccgaggctac attgagggat cgcaagttat tgtcaaaagc      3060
     gaccatcagc cgctgcgatg gctcatgagc ttaaagtcgc ccagcggccg tctagcgaga      3120
     tgggcattga cactacaagc gtacaattta cagatacagt atacgccggg caggtcaaac      3180
     gtcatcgccg acgcactaag tcgtcctgcc tgttgcgatg aagattcgaa gagctgcgaa      3240
     atgtgtcagg tgataatcga catgccacag aggagtccag ctgatgttcg agcaaaccaa      3300
     atcaaggatc ccgagctcca gaagatcatc gaagacatgg agtcggatga cgtcgacttc      3360
     agggggagag cctggtcgag ccgaggctac gtcttgtccg atggtgtgct ataccgatac      3420
     ggccccgagg cggatggaga tgagagcgcc tgtttggttg tcccacagca cgagcgagag      3480
     aaggtcttac tggacttcca taatgcaccg acagctggtc acttaggtgt tgatcgcacc      3540
     tacatgcgtt taagcaccag gtacttttgg ccagggatga aagcgcagat tgctgcccac      3600
     gtaagaggct gtgtcgactg tcaaagatat aaggtcgaca atagaaagcc cgctggtctc      3660
     ctgcagactc ctgcgatgag tcgtcgtttc gaggtgatgt ctgtagatct gttcggacca      3720
     cttcctcaga caaccagcgg taaccgctgg atcctaatag ttgaagacgt atgctcccgc      3780
     tgggtggagt tgttcgcgct gaaggctgcc acgagcgcag acgccgcgaa gacgctcacc      3840
     caagaagttt tcctacgcta tggcgtcccg cgacgcatga ttagcgacaa cggggttcag      3900
     tttgtgagcg aagtgatgca gcaggcatgc cacgcactag gcatcaaaca agacttgaca      3960
     ccgctgtacc accccgaagc taaccccatc gaacgtaaga accgagattt gaagcctcag      4020
     ctcgccatac tcgttggcca ggatcatgca tcctgggatg aacatattgc ggcaatacgg      4080
     ttcgcgatga attccgccgt cacggcaagt accggtcact cgcccgcata tttgactttt      4140
     ggccgcgaac tccgagctcc ggccgatgtt ctcgacgaca tgagggcaat aataagtagc      4200
     gagatagccc acaccgctat aacaccatat ctgaagagac tatcctgcgt cctcgtggaa      4260
     gcgcgtgacg tccatgagaa ggcgcaagca gctcaaaagt tgcacgccga ccaaggtcgc      4320
     cgccctgcgc cagattacaa ggtgggcgac ttcgtattac tgaagacgca aggcatgaac      4380
     gatacggatc ggggtcactc ctctaaattt gtgccccgca gagatgggcc gtacaggata      4440
     aagagcgtga cgagtcctac cacgtaccgt ctggaaagcc tcactggcga agatattggc      4500
     aagtaccacg cctcgcacct ctcgccgtat gtcggtcccg tgattgcgcc cgttagggga      4560
     aagcgacgtc gcggtaggcc gcggaaggtt tagtggctag tccaaacgcg agggcgctat      4620
     gtttgaacta gagggggaga t                                                4641
//
ID   Gypsy-50_MSe-LTR repbase;    DNA;    INV; 339 BP.
XX
AC   .
XX
DT   29-DEC-2020 (Rel. 26.02, Created)
DT   29-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-339
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 976-976 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 339 BP; 67 A; 112 C; 82 G; 78 T; 0 other;
     tgtagcgcgc ccaaggacat tcggcgcgaa gccgagtcga atgtacttgt agcgcgccgc        60
     cgtaaacgcc cgaacggtcc cgacacctcc cgaaccctcg ctcggcagtc cccgcgaccc       120
     gcgccgcacg cgccgcgatc gcccgagccg cgactcgctc cgtcgccgcg gctcgtcagt       180
     cggcccgcag ctacgcaacg cgcgaatcga cgttccgtcc gttgcattgt aacaatcgca       240
     tagtgtatgt acctacttac attgtatgtt cgctacatta aagtgttgtg gactttactt       300
     cgttttttta tattaatata tgccaccaga ctatattat                              339
//
ID   Gypsy-50_SiCu-I repbase;    DNA;    INV; 4149 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4149
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4976-4976 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           130..4089
FT                 /product="Gypsy-50_SiCu-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MATPFNVQAPENFNFSSPADWPRWKKKFERFLVVSGL
FT                 AKEDESKQIEMLMYLMGDKCDDIFRTLKFKAEDDKKKVKEVLAAFDAHFIV
FT                 RRNVIYERALFNSRIQEEGETVDDFITALYRLAEYCEYKDLNDEMIRDRIV
FT                 VGVRDKQLSEKLQLDNALTLEKAVTTVRNHDAVRKQQKNLQCRPTSPKVDQ
FT                 VRAKKPFKKNKNFTHQNESNDAKADDAKKCGRCGLTHWKGKPCPALEVECR
FT                 NCKKKGHYSSCCRSKQKNEKDSTATVKEVAQDDEKEDAFMMSLTTADPEED
FT                 DDDRRQRWRASVKIANTEVDFKLDSGADVIVISAYLHKKKMKRIRLESSDR
FT                 RLRAADGNYLDCIGTFTATVNYKNKTINEKIYVVRGLKEPLLSLKACEQLG
FT                 LVKRVDVLETGEAITKVKPKTEFPELFKGIGDMKCPPYQINLKDNGTKPFA
FT                 VHTPRRIPIPLMKKLQARLEELQKLKIIKPVEVATEWCAPTVITGKPNGDI
FT                 RLCVDLTKLNQCLEREVHPMPVVEHMLGQLGGAKYFSKLDANSGFHQIRLE
FT                 EKSKLLTTFITPFGRFCFERLPFGITTAPEYYQRTMSTLLQGIENVLCFLD
FT                 DILIFAETKEQHDKILREVLNKLKDAGLTLNDDKCHFGRTEISFLGHIINE
FT                 EGIRPDPKKIEAVIQMPDLTNVSEVRRFLGLVNQLGRFVKNLSEEAAPLNQ
FT                 LLCADQEFIWGPAQRKSFKRLKELITKHPVLALYEVDRRTVVSSDASSYGL
FT                 GAVIKQETTKGQWRPIAYASRTMTDAEKRYAQIEKEALGITWACERFQDFL
FT                 TGKQFLIETDHKPLIPIFSTKDLDSLTPRLQRFRMRMMRFSFDIFHTPGKD
FT                 LVAADALSRQPLKTEEDGENENSVAAHINAVLSCLPITDERLSEIWKAQQE
FT                 DPTLKKIFAYAQNGWPEKKKLDGDCQEFWPVRDELASENGLLMRGCRIVIP
FT                 KSLRAEMLEKLHTGHLGITKCRSRARETMWWPGISSDIEKMIKRCTVCIQE
FT                 SSNRHEPLMTTDFPTRPWQRLAMDLFYYNKKYFLVVVDYYSRYPEIVSLDR
FT                 LTAELVIRSCKSIFARHGVPETVISDNGTQFGDPMRSDFSPGSSREFAKFA
FT                 ADYGFVHQTSSPKFPQSNGMAESAVKIIKTLFKKNADASKALMEYRATPLE
FT                 NGFSPAELLMGRKIRTTVPVLPDNLLPKTVDPEILAKKEEKRKKRMKKNYD
FT                 DHHGARELEELQPGDAVWIIDLKTWGHVLEKADTPRSYLIKTPRGTFRRNR
FT                 FHLKRGYDIPMPENVPAPTEENEEHGEEEQVPANYPQPNDGPPTSRYGRVL
FT                 KKTDFYKA"
XX
SQ   Sequence 4149 BP; 1376 A; 849 C; 992 G; 931 T; 1 other;
     tggtggcagc ggtgaaaatc gttaaaatta acgcacccaa gagaataatt attaccgata        60
     attagagaaa agtagataaa atcgataaat ctattttttt gagaattttt tagtgcagaa       120
     aagtgaaaaa tggcaactcc attcaatgtt caggctccag aaaattttaa cttctcatca       180
     ccagcagact ggccgagatg gaagaaaaag ttcgagaggt tcctggttgt cagtggtcta       240
     gcgaaggagg acgagtccaa gcagatcgag atgctgatgt acctgatggg agataagtgt       300
     gatgacatct tccgtaccct caaattcaag gcagaagacg acaagaagaa agtgaaggaa       360
     gttcttgctg ctttcgacgc tcatttcatc gttcgacgaa acgtgattta tgagagagcc       420
     ctgttcaatt ccagaatcca ggaagaagga gagaccgttg acgacttcat tactgcgctt       480
     tacagactgg cggaatactg cgagtacaag gacctgaatg acgagatgat tcgggatagg       540
     attgttgttg gagttagaga caagcaacta tcagagaagt tgcaactcga caacgcctta       600
     actttggaga aagcagtgac tactgtacgg aatcatgatg ctgttcgaaa gcaacagaag       660
     aatctccagt gccgcccaac gagtccaaaa gtggatcaag ttcgagctaa gaagcctttc       720
     aagaaaaaca agaatttcac tcatcagaac gagtcaaatg atgccaaagc agacgacgcc       780
     aagaaatgtg gacgttgtgg actgactcat tggaaaggaa agccttgccc tgctttggaa       840
     gtggaatgcc gaaactgtaa aaagaaagga cattattcat cctgttgcag atcgaaacag       900
     aagaatgaaa aagactcaac agcaacagtg aaggaggtgg ctcaagatga cgaaaaagaa       960
     gacgccttca tgatgtccct taccacagca gatccagaag aagacgatga tgacagaaga      1020
     caaagatgga gggcctcagt aaaaatcgct aacactgagg tggatttcaa acttgactcc      1080
     ggagctgacg tgattgttat ctccgcctac ctccacaaga agaagatgaa acgaatacga      1140
     ctggaatcat cagacagaag actgagagct gctgatggaa attacctgga ctgcattggt      1200
     acgtttacgg caacagtaaa ctacaaaaac aaaacaatta atgagaagat ttacgtggtg      1260
     cgaggactca aggaaccgtt actgagtctg aaggcgtgtg agcagctagg actagtcaag      1320
     agagtggatg tcctagaaac tggagaggcg ataacaaaag tcaaaccgaa aaccgagttt      1380
     cccgagctat tcaaaggaat aggagatatg aagtgccctc cataccaaat taacttgaag      1440
     gataatggta ccaaaccatt cgcagttcac acgccacgac gaatccccat tccgttgatg      1500
     aagaaactgc aagctcgtct ggaggaatta cagaaactga agataatcaa gccagtcgaa      1560
     gttgctacgg aatggtgcgc acccacggtc atcactggaa agccgaatgg agacatcaga      1620
     ctttgtgtgg atttgacaaa attgaatcag tgtttggaga gagaagttca tcccatgccg      1680
     gtcgtggagc acatgctggg gcagttagga ggagccaagt atttctcaaa actggacgcc      1740
     aacagtggat ttcaccagat taggctggag gagaaatcca aactactgac gactttcatc      1800
     accccgtttg gaagattttg cttcgagcgc ctgccattcg ggataacaac agcaccagag      1860
     tactatcaac gtacaatgag taccctccta caaggaatag aaaacgttct ttgtttcctg      1920
     gatgacatcc tgatttttgc ggaaacaaaa gaacaacacg acaagatttt gcgagaagta      1980
     ctcaacaagt taaaagatgc tggactgaca ttgaacgatg ataaatgtca ctttggaaga      2040
     acggagatct ctttcctggg acatatmatc aacgaagaag ggattcgacc agatcctaag      2100
     aaaattgaag cagttattca gatgcctgat ttgaccaatg tcagcgaagt gcgaagattc      2160
     ctgggactag tgaaccaact tggcagattt gtgaaaaatt tgtcagaaga agcagcacct      2220
     ctcaatcaat tattgtgtgc tgatcaagag tttatttggg gaccagccca gcgaaaatca      2280
     ttcaagagac tgaaggagtt aattaccaag catccagtcc tggcactgta cgaagtggac      2340
     cgaagaaccg ttgtatccag tgacgcatct tcttatggac ttggagctgt aataaaacaa      2400
     gagaccacga aaggtcaatg gagaccaata gcgtacgcct cgaggacgat gacggacgct      2460
     gaaaaaagat acgctcaaat tgagaaggag gcactcggaa tcacatgggc ttgtgaacga      2520
     ttccaagatt ttttgactgg aaaacaattc ctgatcgaga ctgaccataa gccgctgatt      2580
     cccatcttct ctacaaagga tttggatagc ctcaccccaa gactacaacg attccggatg      2640
     cgaatgatga gattttcatt cgacatcttc cacacgcctg gaaaggatct tgtagcagca      2700
     gacgctttat caaggcagcc attgaagact gaagaggacg gtgaaaacga aaattcagta      2760
     gccgcccaca tcaatgccgt actttcctgt ttgccaataa cggacgaaag gcttagcgaa      2820
     atctggaaag ctcagcaaga agacccgacc ttaaagaaaa tctttgctta cgcgcaaaac      2880
     ggctggcctg agaagaagaa attggacgga gactgtcaag aattctggcc tgttcgagac      2940
     gaattagcat cagaaaacgg attactgatg agaggatgcc gcattgtcat tcctaaatct      3000
     ttgcgtgctg aaatgctgga gaaactacac actggacatc ttggaataac taaatgccga      3060
     tccagagctc gagagacaat gtggtggcca ggtatttctt cagacataga aaagatgatc      3120
     aaaagatgca ctgtctgtat acaggaatca agtaacagac acgaaccgct gatgacaacc      3180
     gatttcccga cacgaccgtg gcagagatta gctatggacc tgttttacta caacaagaag      3240
     tactttttag ttgtggtgga ctactactca agatatcctg aaattgtgtc gttggaccga      3300
     ttaacagctg agttagtcat cagaagctgc aaatcaattt ttgcacgaca tggagttcca      3360
     gagacggtga taagcgacaa cggaacccag tttggtgatc caatgagaag tgacttcagt      3420
     cctggatcat cccgagaatt tgctaaattt gctgctgact acggatttgt tcatcaaacg      3480
     tcaagtccca agtttcccca aagcaatgga atggcggaat cagcagtaaa aatcatcaag      3540
     acgctattca agaagaacgc agatgcttca aaagctttaa tggagtatcg tgcaaccccg      3600
     ctggagaatg gattcagccc agcagagctt ttgatgggac gaaaaattag gaccactgtt      3660
     cccgttttgc ccgacaacct tcttcccaag accgttgatc cagagattct cgccaaaaag      3720
     gaggaaaaga ggaagaagcg tatgaagaag aactacgacg atcatcatgg agccagagag      3780
     ttagaagagc ttcagcctgg tgatgccgtc tggataattg acctgaagac ttggggtcat      3840
     gttctggaga aagctgacac tcccagatca tatctgatca agactccaag aggaactttc      3900
     cggaggaacc gtttccacct gaagagagga tacgacattc ctatgcctga gaatgttcca      3960
     gcaccgaccg aagaaaatga agagcatgga gaagaagaac aagttccagc aaactaccca      4020
     caaccaaatg atggacctcc aacatcccga tacggacgtg tccttaagaa gacagatttt      4080
     tataaagcat aaattaatga attaattatg tatgatttga tgttttgaat tagatactga      4140
     aaaggggga                                                              4149
//
ID   Gypsy-50_SiCu-LTR repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-168
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5127-5127 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 168 BP; 56 A; 28 C; 29 G; 55 T; 0 other;
     tgtgctgggg ctatatgaga aaccgctata gtttaagcta tgtaagcatg ctgttcatga        60
     taatgtaaaa tgattctgta gaatgctaca cgcattcagt tgcactctgc tcgtccactt       120
     gagagatcat caataaatac ttatatatta ttaatcaata atataaca                    168
//
ID   Gypsy-50_SpEx-I repbase;    DNA;    INV; 5611 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5611
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4070-4070 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           456..4970
FT                 /product="Gypsy-50_SpEx-I_1p"
FT                 /translation="MPRSEDSEVGTPSRTVTRKRRNLRSSSSSSSNDERSS
FT                 RRRSKHRRQQRKRRQRSTSSSEESERRSRRSRRYNSQNKFFKNFVEMMNVV
FT                 KNVSERDKFPVLNNVVPEFDPMSKEQTMDAWIHKVEECSQIYGWNDRQLIH
FT                 YALPKLAGVAKTWYQGLPSVMFSWSEWKDKLRESFPTRENYADLLTDMLNK
FT                 RVRHGESLELYYYSKMNLLNRCDIADKRAVDCLIAGIDDRGVRLGAQAVEF
FT                 HEPEQVLKFFKSIKPSQDKVSSDYNKVKEKDKRNTVQIQNTSSPKHTQSGL
FT                 RFNRTTCYNCNELGHPFYKCTKPKVQCTKCKLLGHTETNCPSKKGNTSEVT
FT                 SKTVMQINSAHYSNHKYKMPIKLNNKIIECHVDLGSDGTLVRYSDAVKLGL
FT                 TWQSVRTPLLKGLGNVPYQPIGLAFVSIEVQGVIQHNVETLIVNDELINTP
FT                 VLLGHTFTERPDVRIIKTNSDVIFQKVLTSVNDNETVKFPLVCVTESHIAP
FT                 GELKAVPIRYEIDYTGQVYVNGGIRGYGGSEYYQLPGGYQLKQGLGSILIQ
FT                 NIGDKILTLQTDELVTRGYIISDYLQINTVQESHDISGEFSFNHGDNLTPK
FT                 EIHVLQQLLYKYKDCFSNNLRDLGFTTVNEMVISLKDSEPVVYRPYRLSYT
FT                 DRQLVRNMVQEMLDANIIRESNSSYASPIVLVNKKSGEKRLCVDYRALNRK
FT                 TKREHYPLPRIEDQLDMLAGSKLYITLDMFSGYYQIPISEDSRDKTAFVTP
FT                 DGQYEYNRMPFGLVNAPSVFQRTVNKILQKSRVKYALVFMDDILIPASSFE
FT                 EGIVRLEEVLNLIKTGGLTLKMSKCNFFFNKIDYLGFEVSEAGIRPGSSKI
FT                 EAVSKFPVPKNAHEVRRFLGLSSFFRRFVKGFAVIARPLTSLLKKERDWKW
FT                 GKEEGESFEQLKRKLVERPVLALYRPGAETQLHTDASKFGVAGILMQKDEA
FT                 GFLKPVAYYSRQTTTDEQKLHSFELETLAVISSLNKFRVYLLGIQFKVITD
FT                 CNALRTTLTKRDLIPRIARWWVQFQEFDCEIEYRPGEKMAHVDALSRAPIE
FT                 ADSDNQSIIIDVLSINTENWITTIQQTDDELKRITTILGDPSTKDAAEIHK
FT                 NYKLKNGRLYRIINKDTLRWVVPKGARWQILRSNHDDVGHFGFEKTLERIS
FT                 SLFWFAKMRRFVKKYVSACIECAHHKIPSGAKAGELHPIPKVSRPFHTIHA
FT                 DHLGPFIRTKRGNTYILVIIDAFTKYINITAVRNTKSATSIRVFREHCSYF
FT                 GTPSRLITDQGSSFTSKIFREFVTSNGIKHVYNAVATPRANGQVERYNRTI
FT                 LSSLGAMNHDKPNGNWDEHLANIQLGINTTPHATTKKTPSELLFGINLINP
FT                 SQGVLNEVISDMETPVSTDKNLIEMRSEVEKLMKEQQNRDKDRFDKKRKRV
FT                 TFSEGDLVRVIRAVTGIEGQSRKLESKCKGPYRVKKVLPNDRYVIEDTPLT
FT                 RKGKVYEAVVSVDKMFPWVNFNESESDSSESKSSNEGSEA"
XX
SQ   Sequence 5611 BP; 1878 A; 949 C; 1176 G; 1607 T; 1 other;
     tctcagaagt gggattaaca acagttttga taaattgtct gttattctac gccctaggct        60
     aacagtgtaa gtaaaactag attttttttt ctttttttac cttcataagt ttattttcct       120
     tggtgtagtg aaattgtgaa agaatttgta ggaaggtgtg ccatgattaa cgctgttgca       180
     agatactaac cggaaaggat ttattccttt actttgtaac aattatggta tgattatatg       240
     aaaaaaaack gccacatcat tttgaatccc aacggtttta ctttcaaaat atatatacga       300
     tataagaccg tgaaactgaa tactgctatt gattggtttg ccttagttta ttttttgttc       360
     tattctcttt tcaatcgaaa ctcgtaaaat acctacatgt ttgaaagttt aagatgttta       420
     ctacatacat ttttgtgtgt gagttttaga taaccatgcc aagaagtgaa gatagtgaag       480
     tcggcacccc ttcccggacc gtgactagaa aacgacgcaa cctaaggtca agcagctcca       540
     gtagcagcaa tgatgaacga tccagtcgac gcagaagtaa gcatcgcagg cagcagagga       600
     aacgtcgaca gcgcagcact agctcctcgg aagaaagcga acgtaggtca aggcgttctc       660
     gaaggtacaa tagccaaaac aagtttttta agaatttcgt ggaaatgatg aatgtcgtta       720
     agaatgtgag tgaacgcgat aaatttccgg ttcttaataa tgtcgtccct gaatttgacc       780
     ccatgtccaa ggaacagaca atggatgcat ggattcataa ggttgaagaa tgttctcaaa       840
     tatatgggtg gaatgatagg cagttaatcc attacgcgtt accaaaactg gccggcgtag       900
     ccaaaacgtg gtaccaagga ttaccttccg ttatgttttc atggtcggag tggaaggaca       960
     agcttaggga gtcttttccg acgcgggaaa actatgcgga tctactaacg gatatgttga      1020
     ataaaagagt acgtcatgga gaatcactag aattgtatta ctattcgaag atgaaccttt      1080
     taaaccggtg tgatatagcc gataaacgtg cagttgactg cttgatagca ggcattgacg      1140
     accgaggtgt tagattaggt gctcaggctg tagaattcca tgaacccgaa caagttttaa      1200
     aatttttcaa aagtataaaa cctagccaag acaaagtgtc ttctgactat aacaaagtta      1260
     aagaaaaaga caaacgaaat acagtccaaa ttcaaaatac atctagccct aaacatacac      1320
     aatccggtct tagatttaat cgtactactt gctataattg taatgaatta ggtcacccct      1380
     tctataaatg tactaaaccc aaagtgcaat gcaccaaatg taaactgtta ggtcatacag      1440
     agacaaattg tcctagcaag aagggcaaca cttccgaggt cacttctaaa actgttatgc      1500
     aaatcaatag tgctcattac tctaatcata aatataaaat gccaataaag ttaaataata      1560
     agataataga atgtcacgta gaccttggaa gtgatggcac tcttgttagg tatagtgatg      1620
     cggtcaaatt aggattaact tggcaaagtg tacgaacacc gttattgaag ggtttgggta      1680
     atgtaccata tcagcctatt ggtttggcat tcgtttctat tgaagtacag ggggtcattc      1740
     aacataatgt ggaaactctt atagtaaatg acgaactcat aaatacacct gtattacttg      1800
     gtcatacttt cacggagaga ccagacgtta ggattattaa aactaattca gacgtgatat      1860
     ttcaaaaggt actaacctca gttaatgata atgagacagt taagtttcct cttgtttgcg      1920
     tcactgaatc tcacatagca ccaggtgaac tgaaggcagt tccaattcga tacgagattg      1980
     attataccgg gcaggtctat gttaatggtg gcataagggg atacggaggt tcggaatatt      2040
     atcaattacc tggtggatat caattaaaac aaggtctagg cagcatactt atacaaaaca      2100
     ttggagataa gattttaacc ttacaaactg atgaattagt gacgcgaggt tacataataa      2160
     gtgactactt acaaataaac acggtgcaag aatcacatga tatatcggga gaattctcat      2220
     ttaatcacgg tgataatcta actcctaaag aaatacatgt cttacaacaa ttattatata      2280
     aatataaaga ttgcttctcg aataatttgc gagatttagg gtttacaaca gttaatgaaa      2340
     tggtgattag tctcaaggat tcggaaccag tagtatacag accatatagg ttatcgtata      2400
     cagatcgcca gctagtacgt aatatggtgc aagagatgtt agatgcaaac attatcaggg      2460
     aatcaaattc ctcttacgct agtccaattg tattagttaa taaaaagtcc ggcgaaaaac      2520
     gtttatgtgt ggattatcgc gctcttaaca gaaaaactaa acgcgaacat tatccattac      2580
     caaggataga agaccaatta gacatgttag ctggcagtaa actatatatt accttagata      2640
     tgttttctgg ctactatcaa atacctattt cggaagattc tcgcgataaa actgcattcg      2700
     taacgcccga tgggcaatat gaatataacc gaatgccttt tggtttagta aacgcacctt      2760
     cagtatttca acgtaccgtt aacaaaattt tgcaaaaatc tagagtaaaa tatgcattag      2820
     tatttatgga cgatatctta ataccagcca gtagtttcga ggagggtata gtgaggttag      2880
     aggaagtatt aaatttgata aaaaccggtg gattaacatt aaaaatgagt aaatgtaatt      2940
     ttttcttcaa taaaatagac tacttagggt tcgaagttag cgaagctggt ataaggccag      3000
     ggtcgtcaaa aatagaggca gtttcgaaat ttccggtacc taaaaacgct catgaggtta      3060
     gaagatttct tggcttgtca agctttttca gaaggtttgt caaagggttt gcggtcattg      3120
     cacggccctt gacgagcctt ttgaagaagg aacgggattg gaaatggggt aaggaagagg      3180
     gtgaatcatt cgagcagtta aaacggaagt tagttgagcg ccccgtgtta gccctctatc      3240
     gccccggtgc ggagacacag cttcataccg acgcaagcaa atttggtgtt gctggtattt      3300
     taatgcagaa ggatgaggct gggtttctga aaccggtagc ttattacagt aggcagacta      3360
     caacagatga acaaaaatta cactcctttg agttagagac cctcgcggtt atttcctctc      3420
     ttaataaatt cagagtttat ttactgggta tccaattcaa ggttattact gattgtaatg      3480
     ctctgcgcac aacattgaca aaacgagacc taatcccccg gatagctcga tggtgggtac      3540
     aatttcaaga atttgattgt gaaattgagt ataggccggg ggagaaaatg gctcacgtcg      3600
     atgctttgag cagagctcca atcgaagccg actctgacaa ccaatccata ataatagatg      3660
     ttttatctat aaatacagaa aattggatta ccactatcca acagactgac gatgaattaa      3720
     aaagaataac tactatattg ggcgacccga gtactaaaga tgctgccgaa atacacaaaa      3780
     attacaaatt gaaaaatgga cgcctttacc gcataattaa taaagacaca ctgcggtggg      3840
     ttgtaccaaa gggagcacgt tggcaaatct tgcgaagcaa ccatgacgat gtaggccact      3900
     ttggctttga aaagacatta gagcgcattt cttcattgtt ttggtttgca aaaatgcgac      3960
     gcttcgttaa aaagtatgta tcggcgtgta tagagtgtgc acatcataaa atacccagtg      4020
     gtgcaaaagc aggtgaacta catccaatcc ctaaggtgag tagacctttc cacactatac      4080
     acgctgatca tcttggccct tttattagaa caaaacgcgg taatacctat attttagtaa      4140
     taattgatgc atttacgaaa tatataaaca taactgcagt ccggaatact aaatctgcca      4200
     ccagtataag agtatttcgt gagcattgta gttacttcgg tacgcctagt agactcataa      4260
     ctgatcaggg aagtagcttc actagtaaaa tttttcgaga gttcgttacg tctaacggga      4320
     ttaaacatgt ctataacgct gtcgctacac ctcgcgcaaa cggtcaggtt gagcgctaca      4380
     acagaacgat actttcttcg ttgggcgcta tgaatcatga caagccaaat ggaaattggg      4440
     acgaacatct agcaaacatt caactaggca ttaatacgac ccctcatgcc accactaaaa      4500
     agactccttc cgaactgtta ttcggcataa acttaataaa cccatctcag ggagtattga      4560
     atgaggttat ctcagatatg gaaacacccg ttagtacaga taagaattta atcgaaatga      4620
     ggtcagaagt agaaaagtta atgaaagaac aacaaaatag ggacaaggat aggtttgaca      4680
     aaaagagaaa aagggtcacc ttctctgagg gcgaccttgt gagagttatt cgggcagtta      4740
     ctggtatcga aggccaatca aggaaattag aatcgaaatg taaggggcct tatagggtta      4800
     aaaaggttct tcctaatgac cgatatgtca tagaagatac tcctcttact agaaaaggta      4860
     aagtatatga agcggttgtt tcagtagata aaatgtttcc ttgggtaaac tttaatgagt      4920
     ccgaatccga ctcttcagag tccaaaagta gtaatgaagg tagcgaagca tgataagaat      4980
     gaaactattg taattaatct gtgtataatg tggtagataa gttaatttta agtgaatggg      5040
     tatgatatat gataaagtta tatactataa acgttgtcat ggtttgtagt ataataatga      5100
     tttaaagaaa gttacgaaag ttattgagtt aaggaacgca ctatgacgtt gtcatggatc      5160
     gtagtgtgtt caagaagtac gattacactg gtcaaggtaa ccggccaggg tattcgtttc      5220
     caaggtccag tcaggtaacc gactggtatt tctagaagtc tcgggtcatc gtgaaggcat      5280
     taagtcattg tcatggacta atgtaatacc cgagttgatg ctaagttatg aatagtaatt      5340
     gtgaagttat tgttaattat gtatgtatga tgctatgttt gatatgtaaa cttacgttaa      5400
     attgttaagt tattaattta ttatacatct taattatgtt aaataataat ttggaaaagt      5460
     aacgcacaag tgagtttaaa ttattactcg aatttgatga attaaaacca aaatatgttg      5520
     tagaattatc tatgtaatgc agtacaaact atattataaa tcaatgtaag gtgtacaacg      5580
     atgggactcg tagtgggacg gaaggccgag c                                     5611
//
ID   Gypsy-50_SpEx-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-308
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4179-4179 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 308 BP; 98 A; 40 C; 60 G; 110 T; 0 other;
     tgttacacta taagaattta gttaaataat tagtcgatta aaaggtttag tctatggatg        60
     attgcatgac atcgattctt actaatcgat gtcaacatta ttaatgaaaa ataataaggt       120
     cggtcattcg tccggtggca gtcgtcctgg taagagctat tgaaattgag tcgaaagtgt       180
     tttgctatgc aagtatttaa tagtgtctaa tgtaattaat gcttggtgaa taaagttaaa       240
     tatattgtgt gaactggact tgtatcattt atctaagtgc acttgcaagt tgcaattacc       300
     cttctaca                                                                308
//
ID   Gypsy-50_TrVa-I repbase;    DNA;    INV; 5108 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5108
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 295-295 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..4794
FT                 /product="Gypsy-50_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDATQFQTFMETFQSALQNLQVSKPPVVISFESYNKS
FT                 TEKFFQYRERFENFCKLKNISEDQEQVKNTFLNVVGSETYETIKAITAPRK
FT                 LDELSYIDIANELDKFLCPKPNLLIEQHRFLSRIQGESETIGEYVAALRKF
FT                 LTNCEFTCDCGKSISDKFLRAQFIRGLKSSLIREKLLSESTLTFDKAVEQA
FT                 LALESSTLNSQEIKNSLNSIQSTSVKHDTHKVSRYSRSHSQSSRFSRSRSQ
FT                 SNGSNGSWRKSNSHRHPSSHQSPRNQYRHQSRSRINYHQLGIADLCFKCGR
FT                 NNHKAYHRRVNPRNLNCESCHRSGHVAKVCVSTLSRKVKSSIKTVSLNVDS
FT                 EDDSADDFNPSYDLWQISGNANDSPKSSHVIRKFYATISIEGKPAKFEVDS
FT                 GCGFTLIPETEFRALKLNAKLKPTSYQFKTYDAGIVVPLGSVSAKVAYRNK
FT                 SSIETLFVVPAGFTSILGRGWIRSLGIKLEDLDSDNDNVNEIHMVQPVSVD
FT                 SLVKKFPRVFEQKIGKIPNVQVSLELRKNAKPRYIRHRDLPIAIREAGLQE
FT                 LDELKANGILTPIEKSDWGSPLVTVPKPGGKVRLCVDYKKSVNPLLVDVHH
FT                 PIPKIEELLSQLKDAKYYCKIDLFKAYSHVEVDEESKKIQAISTHLGTFLA
FT                 NRLSQGIKTAPSLFNKIMNVILFGLPGLICYFDDILVYGRTLKECHDNLIR
FT                 LLEKLEENDLHVNLPKCKFFKTQIIYLGYIIRGRFIMKDPGKVKAVRDAKR
FT                 PSNQTEVKQFLGLVTYYARFIPNASEITYPIRQLLKSNNRFHWSASCEAAF
FT                 LKLKSIIISDQVLVSYDPNLPVTVACDASPYGVGAVLSHIVDHVERPVMFA
FT                 SRSLTPAEANYSQIDREALAIMFSLDKFYMYIYGRKFTLETDNAPLTRIFH
FT                 QHANLPPMTASRLLRYAAYLANFDYEVKHRPAKLHSNVDFLSRFPIPDENK
FT                 QHSNQASVDSELLACHSQTINQVTTMNVTSKDIVQETLKDPVLSKILTEMK
FT                 EDSNSKVNEQFTVQGNLLFKGNRVYIPEKLRASILKELHETHIGTTKMKQL
FT                 ARRYVYWPAIDRDIEHLVRSCETCLMNQNSPKKVPVHHWEEPLQNFDRVHI
FT                 DYAGPFLNHHFLIFVDAKSKWPEIQPLKSTPTTETTMKLLQDIFVTHGYPK
FT                 NLVSDNAKIFANPTFEDFCKTRGIRQQFIAPGHPATNGLAERYVQILKSKL
FT                 KKMVEEPGTIEMKVKRILLQFRATPLENGKTPAELYLNRKFRIRLDAIFPQ
FT                 MNKKSAESPVRSLTVNQEVIAQVYRNNKTCWQRGIVLRRFGQLHYLIKLHT
FT                 GYIFKRHINQLRQAMKEVTSKQQTEXIPTKPATKPEKRVQFAENPTVFEYA
FT                 SRCSKSTTGNNSSSRIPTSTTGTEEQQPTVSQPTSSQVSTQESNRTPSTVE
FT                 VSKTNTKSTQSLPVVSTSCATPEQEPKASTSQAEEQQHVSQSDEERKAVGL
FT                 TKQAAVKARTLGRGRGSPSTSENVGQPSTSQRIRRPPKHFRDFIVEID"
XX
SQ   Sequence 5108 BP; 1786 A; 942 C; 943 G; 1435 T; 2 other;
     aattggcgac gaggataaac gaaagttagt tatgtacgtg tcgcgtcggt attaaagtat        60
     ttagtcgaaa atcgcgaaat cgcttgcccg ggcttaacca atgcttaacc tcaaaccacg       120
     atggaactgg acgaaactcg ctgtacgaac aaaggaacca catgtctttg aatacgccga       180
     ataagtacaa aacttggtaa ttgtgtcaaa tattatccat ttcattgata attttgttcc       240
     ccatgcctga taacgatgga tgcaacacag tttcaaactt ttatggaaac ttttcaatca       300
     gcgttacaga atttgcaagt gtcaaaacca ccagtagtga taagttttga gtcatacaac       360
     aagagcacag aaaaattctt ccaatacagg gagaggtttg aaaacttttg caaattgaag       420
     aatatcagtg aagatcagga acaagtcaaa aatacctttt tgaatgtcgt cggaagcgaa       480
     acttatgaaa caattaaagc aatcactgcg cctaggaagt tggatgagtt atcttacatt       540
     gatattgcga atgaactaga taaattcctg tgccctaaac cgaatctctt aattgagcaa       600
     caccgttttc taagtagaat tcagggtgaa tcggaaacca taggagagta tgttgccgct       660
     ttacgcaaat tcctaaccaa ttgtgaattc acttgtgatt gtggaaaatc aatttcagat       720
     aaatttttac gagctcagtt tatcagagga ctgaaaagtt ctctcatcag agaaaaatta       780
     cttagtgagt ccactttaac ttttgataaa gcagtagagc aagctctcgc tcttgaatcg       840
     tcaacgctca atagtcaaga aatcaaaaat tctttgaatt ccattcaatc aacttcagtt       900
     aagcatgata cccataaagt ttcaagatat tctcgatctc attctcaatc atccagattt       960
     tctagatcaa ggtctcagtc aaacggatcc aacggttcat ggagaaaatc caactctcat      1020
     cgtcatccat caagtcacca gtcacccaga aatcaataca gacatcaatc aagaagcaga      1080
     attaattatc accagttagg aatagctgac ttgtgtttca aatgcggacg taacaaccat      1140
     aaagcttatc atcgcagagt gaatccaaga aatctgaatt gtgagtcgtg tcatcgttct      1200
     ggtcatgtag caaaggtatg tgtgtcaact ctttctcgca aagttaaatc aagtattaaa      1260
     acagtgtcgt tgaatgttga ttcagaagat gatagtgcag atgatttcaa cccatcctat      1320
     gatttatggc aaatttcagg aaacgcaaat gattccccca aatctagtca tgtaattaga      1380
     aagttctacg caaccatctc aattgaaggt aaaccagcaa agttcgaggt agactccggc      1440
     tgcggtttta ctctgattcc tgaaaccgaa tttcgagcat tgaaattaaa cgctaaatta      1500
     aaaccaacgt cttatcaatt taaaacgtac gacgcaggaa tagtagtacc tttaggatca      1560
     gttagtgcca aagtagctta tcgaaataaa tcatcgattg aaactctgtt tgttgtgcca      1620
     gctggattca catctatctt aggaagaggg tggattagaa gcttaggaat caaacttgaa      1680
     gacttagatt cagacaatga taatgttaat gaaattcaca tggtgcagcc agtatctgtt      1740
     gattctcttg ttaagaaatt ccctcgggta tttgaacaga aaattggaaa aataccgaat      1800
     gtgcaagtgt ctttagaatt aagaaaaaat gccaaaccta ggtatattag acatagagat      1860
     ttaccaattg ccatcagaga agctggatta caagaactcg atgaattaaa agcaaatgga      1920
     attttaactc caatagaaaa gagtgattgg ggatcgcctc tcgtaaccgt tcctaaacct      1980
     ggcggtaaag tgaggttatg tgtagactac aaaaaatctg ttaacccact tcttgtcgat      2040
     gttcatcatc cgattccaaa aattgaagaa ttattaagtc aacttaagga tgcaaaatat      2100
     tactgcaaaa tcgatctgtt caaagcttat tcgcatgttg aagtcgacga ggaaagcaag      2160
     aaaatccaag caatatcgac ccatcttggg acttttctcg caaataggct cagtcagggc      2220
     attaaaaccg ctccaagttt attcaataaa attatgaatg tgatactatt tggtcttcct      2280
     ggtttaattt gttatttcga tgatattctt gtgtacggca gaactttgaa agagtgccat      2340
     gataatttga taagattgct ggaaaagcta gaagaaaatg atttgcatgt gaatttgcct      2400
     aaatgtaaat ttttcaaaac tcaaatcata tatttaggat atatcattcg tggacggttt      2460
     attatgaaag accctggaaa ggtcaaagct gtcagagatg ctaaacgtcc gtcaaatcaa      2520
     acggaagtaa aacagttttt aggattagtc acttactatg ctcgcttcat tccaaatgcg      2580
     tcagaaatta cgtacccaat tagacaactt ttaaaaagta ataatcgttt tcattggtca      2640
     gcaagttgtg aggcagcgtt tttaaaattg aagtctataa ttataagcga ccaagtgctt      2700
     gtatcttacg accctaattt gccagtaact gttgcttgtg atgcgagtcc atacggggtt      2760
     ggagcagtcc tatcgcacat cgttgatcat gttgaaagac cagtcatgtt tgcatcaaga      2820
     tctttaacac ctgcggaagc aaactacagt caaattgatc gagaagcatt agcaattatg      2880
     ttttctctcg ataaattcta catgtacatt tacggtagaa aatttacttt agaaaccgat      2940
     aatgctccgc tcacaagaat ttttcatcaa catgcaaatt taccaccaat gactgcgtct      3000
     agattactgc gttatgcagc ttatcttgct aactttgatt atgaagtaaa gcacagacca      3060
     gcaaaactgc acagcaatgt agatttcctg tctcgttttc ctatcccaga tgagaacaag      3120
     caacatagca atcaagcatc agtcgattca gaattgttag cgtgccatag tcaaaccatt      3180
     aatcaagtaa ctacgatgaa tgtaacaagt aaagatattg ttcaagaaac attgaaagat      3240
     ccagtgctgt cgaaaatttt aacggaaatg aaagaagatt caaatagcaa agtaaatgaa      3300
     caattcaccg tgcaaggaaa tttgttgttc aaaggtaata gagtttacat tccagaaaaa      3360
     cttcgcgcgt ccattcttaa agagttacat gaaacccata ttgggacaac gaaaatgaag      3420
     cagcttgcaa ggaggtatgt ttattggcca gcgattgatc gtgacatcga acatcttgtg      3480
     cgctcatgtg aaacgtgtct aatgaatcag aattctccga agaaagtacc agtccaccat      3540
     tgggaggaac ctttgcaaaa ttttgataga gttcatatcg attacgcagg acccttttta      3600
     aatcatcatt ttttgatttt tgtagacgcc aaatcaaaat ggccggaaat ccaaccgttg      3660
     aagtcaactc ctacaacaga aacaacaatg aagctgttac aagatatctt cgtcactcat      3720
     ggatatccca agaaccttgt ctccgacaat gctaaaattt ttgcaaatcc aaccttcgaa      3780
     gacttctgca aaaccagagg aattagacaa cagttcatcg ctcctggaca tcctgcaact      3840
     aacggcttag cagaacggta tgttcagatt ttgaaatcta aattaaagaa aatggtagaa      3900
     gaaccaggaa ctattgagat gaaagtcaag cgtatattat tgcaatttag agcaacgccg      3960
     ttagagaatg gtaaaacacc agctgaactt tatttaaatc gtaaattcag aattcgatta      4020
     gatgctattt ttccgcaaat gaataagaag tctgcagaat ctcccgtccg atcattaaca      4080
     gtgaatcaag aagttattgc tcaagtttac aggaacaaca aaacgtgttg gcaacgaggc      4140
     atagtattaa gaagatttgg tcagctgcat tacctcatca aactccatac aggatatatt      4200
     tttaaaaggc atatcaacca actacgtcaa gcaatgaagg aagttacatc aaagcaacaa      4260
     actgaakaca ttccaacgaa acccgcaaca aaacccgaaa aacgagttca atttgcagaa      4320
     aaccctacag tttttgaata cgcgtcaagg tgctccaaat caacaactgg taataattca      4380
     agcagtagaa ttccaacatc aacaactgga actgaagaac agcaaccgac agtatcgcaa      4440
     ccaacatcat cacaagtttc tacgcaagaa tcaaatcgta ctccatcaac agtagaagta      4500
     agtaagacga atacgaagtc aactcaaagt cttccagtag tttctacaag ttgtgctact      4560
     ccagagcaag aaccaaaggc atcaacgagt caagcggaag agcaacaaca cgtgtcgcaa      4620
     agtgatgaag aacgaaaagc tgttggctta acaaaacaag ccgctgtaaa agcaagaact      4680
     ctaggtcgtg gtcgtgggtc accatcaacg tctgaaaatg ttggacaacc aagcactagt      4740
     caaaggattc gtcgtcctcc aaaacatttt cgagatttta ttgttgaaat agattaaggt      4800
     atgtaaaaat tagtcattgt aacttctagt cattctccaa taaatttgtt atcgataaaa      4860
     gaatgtatcg cattattaga gagtaaagag aaatgctaac tacattttta aattttatgt      4920
     gtattttaaa attttatgtg ttcagaaatc aaactataga tagttaattg attcaaaacc      4980
     aagtgcaatt attgtgtaaa taaattctca ttgaattaga attaggaata ttgattgtgt      5040
     attttaatga aaaaattctg aaattctttt agatwgttgt atagattttt ttttccagtg      5100
     agggagaa                                                               5108
//
ID   Gypsy-50_TrVa-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-50_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-207
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 354-354 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 207 BP; 55 A; 42 C; 41 G; 69 T; 0 other;
     tgatatagag taagttggta gttgtaagac aagggaatag ccccctgtca ggttgtgagc        60
     cctgtcgggg aaaactgtaa ttatctcaat atagaatgtc atgtcgatag cttaacaccg       120
     ggtctctttc ctttccatcc ttttatctac ctaattgatc gttaatcgta attatagtta       180
     tggatgccac cttcgttctc cataaca                                           207
//
ID   Gypsy-510_AA-I repbase;    DNA;    INV; 4227 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-510_;
KW   Gypsy-510_AA-I; Gypsy-510_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4227 BP; 1550 A; 609 C; 778 G; 1290 T; 0 other;
     tctcagaagt gggatacgtt cctgaaaatc cgattcattc tattcaatgg actacacaga        60
     agctttgagg atggcagaga atactgaaga taatggcgtt ctttgtcgtg aaaaaccagc       120
     tgcaggtatc gttacaagat gcacagtgaa tgctgcagtt gatccgagtt cgaacttttc       180
     cggtgccgct cattcaagtt cagcaagtca accagcagtt catccagttg gtgtgaccat       240
     ttttcccagt gttcctgtaa ccagtggaag tcaagattag ctgcatcaga cgagttttgg       300
     caaattggtg gacaacagtt tccggattga cgaaatatct actttgttgc cgacgtttgg       360
     tggaagaatt gacgaagatg ttgtacagtt cataactgct gttgaagtca cgaagcaaat       420
     tttgaaggtg gacgaaaatc tgatgaagct aatcgttatg aagaaagttg aaggcaaagc       480
     aagatcctgg atgttttcct gttctgattt tgttatcaaa aattatcatg aaatccttga       540
     agatctgcgc agtatgtttg ggactgtaga aagtatatac gagttacgaa aaaaactatc       600
     aagagtcaaa tggtatggga accagtcgtt tttggagtac tgccaatcta aaagagaaat       660
     agcgcgaaag ctcaagattt ctgaaaagga gttggtggag tacattattg aaggcatcgt       720
     aaatgaagaa ttcaagaacc aagctcgaat gcagaacttt caaacagtgt ctcaggttat       780
     tcaagctttc aaaacgatca aattcaatga tattcgccct agaagaagac caattatttg       840
     ttatgcctgc aatcaacctg gacatgtagc ggtaaactgt ttccgacgaa tcaagaagac       900
     caataccttt gatgaacgac aaatcaatca agaatcacag accgggcgca tgttccatgg       960
     agttgcgagt attgatacat tgacgaaaga atctgacaat aatttcaaaa cgcagacatt      1020
     tacagatata gttaaggagg aaggacataa tggactagtt gactttcaat ttttatttaa      1080
     tgattgtatt tataaagctc ttttcgacac aggcagccca atctcactga tacgccgggg      1140
     attaattgaa aagaaagata tttctgtttt gaatcattgt aaaaaatacc agggtatcgg      1200
     tgggaaaagg cttaaggtat taggaatatg cagtaacact atattaattc aaaatattcg      1260
     tttcagagtt cagttttatg ttgtaccaga caaaactttg ggccttttcg atgcaatcat      1320
     tggaagagac atcatcatgt gctctgaaat ccacacagta atcgagaata acattgaaat      1380
     ttttcccgtg agtaataatt tgaaatctga aaacccttca acgcaacagg taaattctaa      1440
     atcaattttt catattagtt cggaaagtta tcaacaaatt ttaaagaata cggatagctt      1500
     atcggaagat aaattggcaa aatttttaag tacttttaag aagcactatt tattttataa      1560
     gaagccttta aatccagaga caaattatga tatggtaatc aaattgaaga aaggtgatca      1620
     ttttcattat aaaccaagaa gaatttctta cgatcagaaa aaaaggttga cgataaaatt      1680
     gatgaacttt taaaaacagg aataataaaa gaaagcgaat ctccatttgc cagccctatt      1740
     gtgctaattc caaagaaaga taatgatatt agaatgtgtg tagattatag aaaattaaat      1800
     aaggacacta ttcgtgataa ttaccctttg ccaatcatag acgatttatt tgataatctt      1860
     agaggtaaac gcatattttc aatattagat cttaagtcag gtttccacca aattaagata      1920
     gccaaggatt ccactcagta tacattattt ataactcatc gtggacaata tgagtatatg      1980
     agagtccctt ttggattgtg caacgcacct gctgtgtttc aaaggttcgt aaataaaata      2040
     tttaaacatc taattgatca aggaaaatta tgcgtttata tagatgatat tttgatagca      2100
     agtgagagtt ttgaagagca tttggaaata ttagcagaag tatttgaaat tttaagtaaa      2160
     aatttattgg aactcaattt ggataaatgt aagtttttat ttagagaaat agattatttg      2220
     gggtatacaa tcaatgaaaa tggacgaaaa ccaaataaaa cacacattga aagtgtatct      2280
     aattttccac agccaaaaaa ttcaaaagat gttcagcgtt tcattggatt aactagttat      2340
     tttcgaaaat tcattgcaaa ttttgctact attgctagac cactttataa cttattgaaa      2400
     aaagatgcag tttttagttt tgaaaacgaa caaattgaat cttttgaaac cttaaaacaa      2460
     aaattaatat cttcaccaat tttagctctt tataatccaa atgctgaaac acagctgcat      2520
     tgtgatgcta gttcacatgg ttttggagca gttttacttc aaaagcaagc ggataataat      2580
     tttcatccaa tcagttactt tagtaaaaaa acggacgaat ttgaagccaa attacatagt      2640
     tttgagttgg aaacattagc tgttattcac gcgattaaaa gatttcatgt ttatttggct      2700
     ggaactcgat tcaaaatttt tacagattgt agagcattag tacagacatt gtctaaaaaa      2760
     gatgtcaatc ctaaaattag caggtgggca ttgtttttag aaaactataa ttatgatttg      2820
     gaatatcgag aggaagataa aatgaaacat gttgatgcac tgagtagaat agatatgagc      2880
     aataaaaata agcaaggaat aatagcatcc ttgggaaaca aaaatgtgag taaagaatat      2940
     gaaatgatag gtattcttaa tgaatcaaac atagaagaaa atattattgt ggcacaagaa      3000
     caagatagaa aattagtaaa tatcaaacag ttattggaac gatcaaactt tccggggttt      3060
     gttttgataa atggagtgtt gtttagaaaa gcagaagata gaaacttact ggtggtcccc      3120
     aattcaatga ttgataatgt tatacggctg tatcatgaca aatgtggtca tataggaata      3180
     gataaaacaa tttttgaaat aaagaaatat tattggttta gtaatatgcg aaaagttgtc      3240
     aaaagtttta tcgaaaattg ccttacatgt atattttata gtccgtcttg taaaaaggaa      3300
     ggttatttga aaattattga aaaaggaaat caacctttta aaacattgca tttggatcat      3360
     tatggcccta ttaaattacc gtcttcaaat agattcaaat atgttcttgt aattgttgat      3420
     gcttttacca aatttgcaaa ttttttcgcc acacgaacta ctaacaccga ggaagttatt      3480
     cgttatctta cacagtatat gcaattttat agtaagccta atagaattgt aacagacaga      3540
     agaacttgtt ttacatctga caaatttgtg gaatttgcta ggaataattg cattgaacac      3600
     gtgaaaacgg cagttagaac accagaatca aatggacaag ttgaaaggat taataaaact      3660
     cttacaccta tgctagcgaa aatgtgtaat gcaggttctt tgaaatggga tacacaatta      3720
     cctaaaattg aatatgtttt taataatact ttcaatagat cgatcaacaa ttatcccagt      3780
     gttttgttat ttggaattca acaaaaatct tcagatattg aaaagcacaa tattgagtcg      3840
     tttattcaaa attcacaacc aaaaaaggaa aattgaaata tagaaatcat ccgcgaaaaa      3900
     tccaagaaaa aaaatttaga agttcaaaaa tataacaaaa aaatatcaga taagaagcgg      3960
     ttaaaatgcc ctaattacag agaaggcgat tttgttgttt taaagactat agtgtcacat      4020
     aaattgtctc cacaatttaa aggcccttat caaatcaaaa agattttgcc agatgataga      4080
     tttgtataac tgatattgaa ggatttcaag tttcaagtgt acctttcaat tcggtctgtt      4140
     cacctcaaaa catgaggaaa tgggtacatg ttgatgttga caatgatgat atcgatgagg      4200
     acatcgcgat tatcaggatg gccgaaa                                          4227
//
ID   Gypsy-510_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-510_;
KW   Gypsy-510_AA-I; Gypsy-510_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-146
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3135-3135 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 146 BP; 54 A; 17 C; 26 G; 49 T; 0 other;
     tgtagccaat agtgttacag tatatttatt aactaagtag acttagatta aatattgtaa        60
     gtaggcaatg actttgtaag gagacaataa aggacattct gtcaaagact atcattgaga       120
     acagttgttt catttgaatt actaca                                            146
//
ID   Gypsy-511_AA-I repbase;    DNA;    INV; 4771 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-511_;
KW   Gypsy-511_AA-I; Gypsy-511_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4771
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4771
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3109-3109 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4771 BP; 1692 A; 837 C; 991 G; 1250 T; 1 other;
     attggcgacg acaaaaaaaa cggaattttg aaaaggaaga taaaatatac agaggaatcg        60
     gagaacacgg aattgaattc ggaaaaagga aaatttatct gcagaagcga gaagaaacta       120
     atcgtatttg aaggttgagg ttgaaaaaat ggcttggtca acggtatgta ttatttggaa       180
     aaataacatt tccatggtta cggtgcaaat attgaaaatt ttaaaatgta gcctgagatg       240
     tgcacctata taaagcaata gttttggcac ccttggcgat ccttgggatg cagtgaaaat       300
     ttaaaatcta gggcgatccc tgagataaag gtaaaacccg aaagcggggt gtttaccaaa       360
     tccgtaggcg atcctcggat gtaaagaaaa cctggaggcg atcctcgggt tagttactaa       420
     aaaaaacaaa cttggaggcg atcctcgggt taaagtaaca gttgaaaaac ctgctggcga       480
     tcctcaggtt ataaaaaaaa awtattgtaa aagagtgaaa cataaaacaa tttgtgtatt       540
     aaataacgtc ttgtacaaac taggtaaacc aactcatacc tccattcgtc gagaatgaag       600
     aaggtccggt gtccatccga tgggagaaat ggagggagca gttcgatgcc tacctgtcgt       660
     ggaaggacat tgacaatcac gaggagaagt ataagacact tatgatgttc ggaggtcccg       720
     atgtacgacg aatcacctca aaagttgctg aagttagaag cggaacaatt gataaccgat       780
     atcgtatagc cgtgaatttg ctggatgagt atttcgtgcc acgagtttca aaaactttcg       840
     aacgccagaa gtttagaaca atgacaccaa tgccacaaga aaagctggac actttcgtcg       900
     tacggctgaa gcatcaagcg accaattgtg atttcggaaa ccaagtagag aacatgatcg       960
     ttgaccagat tgtaagtaca acacaagatt tgaaacttaa acgaagatgc ctggagaaag      1020
     acttaaaact aaaggaagtc ctcgacatag cacgaacgca cgaatctgtc gagttacagc      1080
     tgaataactg ggacggaaag caaacaccga aattggacct gaatgctgtg gatgaaaagt      1140
     ctgttgctgc cagcgaagtt ttgaaggtga cggactatgt gggacgtaaa tgtagccgat      1200
     gtgatggaaa acatgatgtt cgggatcctt cctgtccagc caaaacccgt aagtgtaata      1260
     tttgtggcaa aacaggacat ttcgctcgtt gctgttaccg gaagagaaag caagatgctg      1320
     aattcaagtt tgcagataga tcgaatcaac cgaagataaa acgcttcatt cgtgaaatcg      1380
     aagatactag cgctgatgac gaaggaactg ttttcaacct atttcacctt ggatctggaa      1440
     aacgatttgt gatcgtgaac atcggaggcc accctgtgaa acttatagtg gatactggag      1500
     cagacgaaaa tgtgctagct gaaaatgatt ggaagaaatt aaaacaagct ggtttcgaag      1560
     catatgcaat aaggacaggg agcaagaaga ttttcaacgc ttatggatca aatacaccgc      1620
     ttagtgtttt gggagaactt gacgctgaaa ttacgttcaa cgggaaatca attgattcta      1680
     cgctttacgt gatttctgga gggaaatatt cgttgctttc gggagatgcc gctatcaagc      1740
     taggtatcct gcagttcact tatgcgattg aagttgatcc gtttccatca atcagaggta      1800
     agtaataata ctttgatcaa ataaaaaaaa taatattgtt tggatacttc ataaggtgtg      1860
     gttgcaaacg ttaaaattga taaaaatgtg ccacccgtgc gacaaagctt gcgaaggatt      1920
     ccatttccct tagaagagtt agcaatagcg aaactcaaag aattagagag gcaagacata      1980
     attgagcgag tctttgaagc ttcagaatgg gtttctccaa tgatagtcaa aaggaaaagt      2040
     caaacagaag tacgtataat tgttgattta cgcgaggcaa ataaagctgt cattcgcgaa      2100
     gtacatcccc taccgatgct tgaacaaatg actaaaaaaa taggttggga tcaataatga      2160
     tattgattat attttcatga tttataatta taaccataaa atttcaggtg gccattccat      2220
     ttttacgaag cttgatattc gtcaagcatt tcaccaagtg gaattgaaca agaaatgtag      2280
     gtatataacg accttcattt ctccacttgg gttaatgcgt tacaaaagac tcatgttcgg      2340
     tctctcggcg gcccctgaac ttttccaaaa agtgatggaa acaatatttg ccgattttcc      2400
     ttggctgata atttttatcg atgatatttt aataccagcc aagaatatcg aggaattgcg      2460
     gtgtagaacg gatcttgtga accaaaggct acagcaatac aacattttga tcaatgcaga      2520
     taaaactgaa tacggcgtaa cagaacttga tttcattggt taccacataa ccccaaatgg      2580
     tatatcagtt tctaagagca agttggaggc aattgataag ctcgatgcac ctaaatcgac      2640
     tgaagaagtt cgaagtttcc ttggattagt gaactttgta aatcgatata ttccacacat      2700
     ggcaacaata acaaatcctc taaatcaact tacgcacaaa ggaacaaagt tccattggga      2760
     ttctgttcat caacaagcat tcgatcaaat caaaaatata ttaaagaaag acgagagcct      2820
     aggattttat aatccagatt ttgaaacata tgtaattgct gacggaagcc cggttggact      2880
     tggtgcagta ttggttcaga aaaatgacac tggtcagttt aagataattc attatgcttc      2940
     aaagaccctc acagctactg agaagaagta tgcacaaact gagcgggaag cattagctct      3000
     agtgtggggg tgcgaaaagt tctactacta tttgtatggt aaatcattca acttaataac      3060
     cgatcataaa ccacttgtgg taatttttgg agatcgggtt aaaccatcac ctcgaataga      3120
     aagatggaaa ctacgactga tgtcttacga ctacaaaatt atgtatagac caggaaaagg      3180
     aaatatagct gacccccttt ctcgattatg ccaaactata cccgataacg gacctagttt      3240
     tgatgaagaa acggaaagaa taatcagata tatcactcaa gatacgtgtc ccatagctct      3300
     gtcgttacaa gaaatagaaa aagcaactta tgctgatgag gaacttcaag agcttatcaa      3360
     atggttacca tatgcagctc gacgatggcc taaaacatta atgagatata agaaactttc      3420
     aaactgcatt actacaaacc agaaagttgt gatgaaggat aacaaaatag ttattcctag      3480
     ggtattgcaa aagcgaacgt tggttttagc acacgagcct catcttggca tatcatcaat      3540
     gaaacgacgg ctgcgatcaa aagtttggtg gtctggaatg gactccatga ttgaacattt      3600
     tgtaggaaat tgttcaggat gcgttttagt ttcgattccg gagacacaac caatcacacg      3660
     aacagaaata ccagaaagac catggatgaa aattgcaatg gatttcatgg aaattccagg      3720
     agggcaccat ttgttggttg taactgatta tttttctaga tatttagaag tagttatcca      3780
     aaactccatg acagctaaac taacaatcac aaaactaaga gagatatttg cacgatttgg      3840
     atatcctgaa gaaatagttt gtgataatgg ccaaccattt gcgtctgaag agttttctac      3900
     tttctgtaaa acaaacggaa ttgaaataaa acattctgtt ccatatgcag ctttccaaaa      3960
     tggacaagta gaaagacaaa atagaacgtt attaagatct atcaaaatca gcgatgcaat      4020
     gggtcgcgat tggaaatgcg acctacaaga cttcttacat gcgtatcgat caacaccaca      4080
     ctcagttacc aatttctctc ctgctgaact catgttcggt tggaacttgc gagataagct      4140
     accacgatcc acacgtaaag taaacttcga tcaagcaaaa caaaacgatg cacgtatcaa      4200
     ggaaaaagga aaacaatata ttgacgaaaa acggaatgca aaacaatcca ctatcgatgt      4260
     tggagacttg gtagtggtaa agaacttcat tcgaaagaat aaactatctc caaatttcaa      4320
     ccctcaaaaa cacaaagtag tcaaaagaga ggggacgcgc cttcatttgg aaaaccttga      4380
     aacaggtgtt ttatccaacc gacatgttaa ccatacaaaa aggattggta atcaaaaccc      4440
     atttatgtgt tcaaaagaag gagatagagg tataatctaa caattatttg attattataa      4500
     atctatatag atatattcct attcaaatat tggtataaaa tgtatttgaa tttcagatgt      4560
     gatttcaagc caattgccat cgaatgaaga aagaggaaaa cgtcaatatc aaccagagtc      4620
     cagagtagcc gaatcaaaaa gaccaaaacg tctccctaag cattttcaag attttgcgtt      4680
     atataatgta gaaaggcttt aatcaataat ccttgtattc acacttacta tttcattaaa      4740
     caaaatgtta attattagaa aaagggagag a                                     4771
//
ID   Gypsy-511_AA-LTR repbase;    DNA;    INV; 99 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-511_;
KW   Gypsy-511_AA-I; Gypsy-511_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-99
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-99
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3136-3136 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 99 BP; 32 A; 17 C; 15 G; 35 T; 0 other;
     tgtaggatcg cagtaatcat tgattgttat acattgtcac attggttcaa taaatattca        60
     ttctaatact aacactaaag ctcgaaggac gtttcttca                               99
//
ID   Gypsy-512_AA-I repbase;    DNA;    INV; 6275 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-512_;
KW   Gypsy-512_AA-I; Gypsy-512_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6275
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6275
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3186-3186 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           377..1318
FT                 /product="Gypsy-512_AA-I_1p"
FT                 /translation="MPETRQSEIEQLKSQLDELRLQMLQQGNQVNPFVIPD
FT                 PIKNMSEFTGNRRELSAWLEELDEIYDDYVIKGQNGAPDTFDGHYIRAIKN
FT                 KIKGEARTILCANGNPKTIVGIKRILTENYGDQKDLTTNLSILFHLKKGDK
FT                 TNLKFFNDIKELNTKLKSNLQSNPLSINQLLDVITIAKYLDNIGEPLGSII
FT                 RQSNPQSLEAAYQSVCINQNAETRYRPSKSFDKAKSTSYNAHNKVYTKPPA
FT                 NEKPAQGKPPYRRIKTDNNVTELHEADDSDDNDQFAEVDDTPTTTTALTSD
FT                 DDDRGEASEVNFQRVRKVKRRT"
FT   CDS           1279..4641
FT                 /product="Gypsy-512_AA-I_2p"
FT                 /translation="GKFSEGQKGKKEDLNFIPYIKLLTSKGTLNFLIDTGA
FT                 NKSYINPSHVETFQKTSNPAIITNKNGKFVVNKFVRTNLFPECSKSGKLTY
FT                 YVFKFHKFFDGLIGYENLAKMGAKIDTRSNCLIIEDKTFPMSKYSLSALNF
FT                 NACVENVCSIVTTSNGDFLVENEINLTPEVSIKPGMYHAANNSALVHLGTS
FT                 KPDKIHVVEPLINDGMLLDQQKRSFNFNVPSDHMNKEEKQLLFKTLKQFQR
FT                 IFLQENQKLSFTHEVKHAIKTDDDIPIHQKAYKYPYHLREEVQKEIDKLLD
FT                 NGIIRESSSQWTSPIWVVPKKVDNSGKKKYRIVIDYRKLNAKTPADRYPIP
FT                 EVSEILDRLGKAQYFSVIDLASGFHQIEVDPADIPKTAFNVDHGKYEFVRM
FT                 PFGLKNAPATFQRLMDSVLRKHLGIRCFVYMDDIIIYSTNLETHLQDISKV
FT                 LTTLQDANLKIQCDKCEFLRKEVEFLGHMVTTEGVRPNSRKVEAVKNWPIP
FT                 KTPKELKSFLGTVSYYRRFIPRFAHIAKPMTEQLRGKHKDINLSTNYKSAF
FT                 EKLKEIMTTDLLLAYPNYDEPFILTTDASNVAIGAVLSQMFEGKERPIAYL
FT                 SRTLSRAEENYSATAKELLAIYFAAKTFRPYLYGKRFTIYTDHEPLTKELK
FT                 LTDSTGRVTRQRLYLEQFDFSIVYKKGKQNVVADGLSRIPRMEANNYESEV
FT                 YPQDKIYGIHPVNRFKNQIFLKVTDNKRKSPYLLIQIFPGYTRHIYHQPNY
FT                 NEESLVRILKEQVNPTATNGIFAPLEVARECRKVATKHFQDKLKIEYCNLK
FT                 LPDIIDQREQDEFIRKSHNFNHRSCKIVFDDISKSVFFPGLFKKLQDFSKN
FT                 CEDCRLAKYERHPFKIPITRRMYDRPFDTVYMDVFVKETEKFLTIVDAFSK
FT                 FAQLYKIENEQTDTIIETLTRYFSTFGIPKQIICDQATSFRNPAMSKFLSD
FT                 LNISLHFASCSNSNGVVERFHSTLIEMYQANRDKTSSLFLYDGLKLVVALY
FT                 NESKHSVTKMAPRDIIYGTSNSLDKIKIASETARKLQTALDNIELHVKHKN
FT                 SKILCLDEEEYKAIQNKNVYAKCKAKPSLLNHRYKVAEIVDQSEKTITDRN
FT                 HVKTHKKHLKRIL"
FT   CDS           4620..6224
FT                 /product="Gypsy-512_AA-I_3p"
FT                 /translation="KTLKTNFVIFRNHCTLFFHRLLLLTLGNAEIYIHDIR
FT                 QNPIIILPIGTAKICNSYLRIVHPIELGPIKQVIDFLYSEAQEKIIYDKLL
FT                 SPIIKTKIEKLSLTFRKIQSSDKRVKRWDSLGKGWKYISGSPDADDIRLIN
FT                 ATINSMIDQENNQIRINSGLDSRIRNITYSINVLISKFSSLSTEFNEGFSS
FT                 VNLLFNIDELIQQVETIGEAITLARVNIPSSRLISLTELAVAQQFLKDQGL
FT                 DVATAESVLEIARAYVVTTRESIKYILRVPKVTNEIYTLYQVEPVISNGTR
FT                 VQLDANFYLNGTTPYCSKSICDQYADHFICQSSQLESPSKCIQKLMSGSSA
FT                 HCPMEKVYGRNIIKRINDATIIIHEADITLKSNCSMHNNKLEGSYLIQFSK
FT                 CAISLDGERFTNINVDIPSKTFIPTTGLKVNSTNLVDRIPLEHLQILHMTH
FT                 RDHIQHLNLTNESIQTRIHFLHWLSFGSISVTTLTLIGITLGCIIKTLLTK
FT                 KATVIIQQGQREVEDTSSGESTQDISMNYTTRHPRFIPQ"
XX
SQ   Sequence 6275 BP; 2205 A; 1323 C; 1164 G; 1583 T; 0 other;
     tggcgcagcc ggtaggatta tcgcgaagtg gtgtttaaaa aagtgctacg gacgacagga        60
     actgattcat catcagcagc ggcgacatcc aacataatca cgctcaggat aagactggat       120
     catcattcag caggcagcga cattacagag gatcacgtta cacataagac tggtggaatc       180
     aaccaaccga tctgaagcac gccacggcga tctccatggc catcatcatt ttcgggtgag       240
     tgaactataa aaaaaaaaaa ccatatatca cagtttaagt gctttactat agtgttttaa       300
     aggtgttcct gttagaaatt gtgttatatc ttgaaaaatt agttttgttc actcatcttt       360
     caaatttctt ctcaacatgc ctgaaacgcg acagagcgag attgagcagc tcaagtctca       420
     gctagatgag cttaggttgc aaatgctcca acagggcaat caggtaaatc cctttgtgat       480
     tcctgacccc atcaaaaaca tgtcagaatt tactggcaac cggagagaac tctccgcgtg       540
     gctcgaagag cttgatgaaa tttacgatga ctacgtcatc aaaggacaga atggtgcacc       600
     agacaccttc gacggccact atattagggc cataaaaaat aaaatcaaag gagaagcccg       660
     cacgatactt tgtgctaacg gcaatccaaa aactattgta ggtatcaaga ggatacttac       720
     tgaaaattac ggagatcaga aggatctcac caccaacctg tcaattcttt tccacctcaa       780
     gaaaggcgac aaaactaacc taaaattctt taacgacatt aaagaattaa acacaaaatt       840
     aaaatcaaac ttgcaatcaa atcccctttc cataaaccaa ttgctagacg tgataacgat       900
     agcaaaatat ttagataata tcggcgaacc tttaggctct ataattcgcc aatcaaatcc       960
     ccaaagcctg gaggcggcat atcaatctgt ctgcataaat cagaatgcag aaacccgata      1020
     ccgcccttct aaaagtttcg acaaagctaa atccactagc tacaatgctc ataataaagt      1080
     ttatacaaag cctccggcaa atgaaaaacc agcgcagggc aaacccccat accggagaat      1140
     aaaaactgac aataacgtca ccgagttgca tgaagcagat gactccgatg acaatgacca      1200
     atttgctgaa gtagacgata caccaacaac gacgacagcg ctgacgtcgg atgatgatga      1260
     tcgcggcgaa gcgagtgagg taaattttca gagggtcaga aaggtaaaaa ggaggacttg      1320
     aatttcattc cctacataaa attgcttacg tctaaaggta cgttgaactt ccttatagac      1380
     acgggcgcta ataagtcgta cataaatccc tctcatgttg aaactttcca gaaaacttca      1440
     aaccccgcta ttatcacgaa taagaatgga aaattcgttg ttaataaatt tgtgagaaca      1500
     aatttatttc cagaatgttc caaatcggga aaattaacct actacgtttt taaatttcac      1560
     aaattttttg acggcctaat tggatatgag aatttggcta aaatgggtgc caaaattgac      1620
     accagaagta attgtttgat tattgaagat aaaacatttc ccatgtcaaa atattcatta      1680
     tccgccttaa atttcaatgc gtgtgttgaa aatgtatgca gcatagtcac cacaagcaat      1740
     ggagatttcc tggtagagaa tgaaataaat ctgacaccag aagtgagtat caagccaggc      1800
     atgtaccacg ctgctaataa ctcagctttg gtacatctgg gcactagtaa acccgataag      1860
     atccacgtgg tagaaccatt gattaatgat ggtatgctat tagaccaaca aaaacgtagt      1920
     ttcaatttta atgttccttc tgaccacatg aataaagaag agaagcaact tctctttaag      1980
     actcttaaac aatttcaaag aattttcctg caagaaaatc aaaaactttc attcacgcat      2040
     gaagtcaaac atgcgattaa aactgatgac gatattccaa tccatcaaaa agcttataaa      2100
     tatccctatc acctccgcga agaagtgcaa aaggaaattg ataaactttt ggataacgga      2160
     atcattaggg aatcatcatc ccagtggaca tcacccatct gggttgtccc aaaaaaggtc      2220
     gacaactctg gtaaaaagaa gtaccggatt gttatcgact acagaaaact gaatgccaaa      2280
     acccctgctg ataggtaccc cataccagag gttagtgaga tacttgacag gcttggaaaa      2340
     gcacagtatt tcagcgtaat tgatctggct agtggtttcc accaaataga agtggaccca      2400
     gcagatattc ctaaaactgc gttcaacgta gaccatggga aatacgaatt tgttcgtatg      2460
     ccctttggcc ttaaaaacgc accagccaca ttccagaggc tgatggattc cgtcttacga      2520
     aagcatttag gaatccgttg tttcgtttac atggatgata tcatcatcta ctcaactaat      2580
     ctagaaacac atctccagga tatttctaaa gtccttacaa ctttacaaga cgccaatctt      2640
     aaaattcaat gtgataaatg cgaattttta agaaaggaag tcgagttcct tggtcacatg      2700
     gtaactactg agggtgttcg accaaattct cgtaaagtag aagccgtgaa aaactggcca      2760
     attcccaaaa caccgaaaga gctgaagtca ttcctcggca ccgtaagcta ctaccgaaga      2820
     tttattccta ggttcgctca cattgccaaa cccatgacgg agcagctacg cggtaaacat      2880
     aaggatatca atttatccac aaattataaa tcagcgttcg aaaagttaaa agagatcatg      2940
     accacagacc ttctgctggc atatccgaac tatgacgaac cttttatcct gacgacagac      3000
     gcatccaatg tggccattgg agctgtgctg agtcagatgt tcgaaggaaa agaaaggcct      3060
     attgcctatc tttcaagaac cctttcgaga gcagaggaaa attactccgc taccgcaaag      3120
     gaattattgg caatttactt tgctgcgaaa acctttcgac cgtatctata tggtaaacgt      3180
     tttaccattt acacggatca cgagcccctt acaaaagagc ttaaattaac agattcaaca      3240
     ggaagggtta cacgacaacg tctttaccta gagcaattcg atttttccat tgtgtacaag      3300
     aaagggaagc agaacgtcgt ggcagacgga ctgtctagga taccgaggat ggaggccaac      3360
     aactacgaaa gtgaggttta cccacaggac aagatctacg gaattcaccc agtcaacagg      3420
     tttaaaaatc aaatttttct aaaagttacg gataacaaac gtaaaagccc ttatttactg      3480
     attcaaattt ttccaggtta cacccgacat atctatcatc aaccaaatta taatgaagaa      3540
     agccttgttc ggatcctcaa ggaacaagta aacccaactg caactaacgg aatattcgca      3600
     ccactggagg tggcgaggga atgcagaaag gttgcgacga aacattttca agataaactg      3660
     aaaatcgaat attgcaacct caaactaccc gacattattg accaacggga acaagatgaa      3720
     ttcataagaa aaagtcacaa cttcaaccac cgaagttgca aaattgtttt tgacgatatc      3780
     agtaaatccg tctttttccc cgggttattc aaaaaactac aagatttctc caaaaactgc      3840
     gaggattgca ggctcgcaaa gtatgagaga catcctttca aaattccgat tacccgtcga      3900
     atgtatgacc gacctttcga tacagtttac atggatgtct ttgttaaaga aacagaaaaa      3960
     tttctgacga tagtagatgc gttttcaaag tttgctcaat tatacaaaat tgagaacgaa      4020
     caaaccgata cgattattga aacattaaca agatacttct caacttttgg aattccaaag      4080
     caaataattt gtgatcaagc aactagcttc cggaaccccg caatgtcaaa attcttaagc      4140
     gatctcaata tatctttgca ttttgccagc tgtagcaaca gcaatggagt agtagaaagg      4200
     tttcatagta cactgataga aatgtatcaa gcgaatcgag ataaaactag tagtttattc      4260
     ttatatgatg gtttgaaatt agttgttgcc ttatacaatg aatcaaagca ttctgttaca      4320
     aagatggcgc caagagacat aatttatggc acatcaaatt ctttggataa aattaagata      4380
     gcatcagaaa cagctaggaa acttcaaaca gccctagaca atattgaatt acatgtaaaa      4440
     cacaaaaatt ccaaaattct ctgcttagac gaggaagagt ataaagcgat tcaaaataaa      4500
     aatgtttacg ccaagtgcaa agcaaaacca tcactcttaa accatcgcta caaagttgca      4560
     gaaattgttg atcaatcaga aaaaacaata actgacagaa accatgtaaa aacccataaa      4620
     aaacacttaa aacgaatttt gtaatttttc gtaatcattg tactctattt tttcacagac      4680
     tgctcctgct gacgttagga aacgcagaaa tttatattca tgacatcagg cagaacccca      4740
     tcattatact ccctatcggc acagcaaaaa tttgtaacag ctatttaagg attgtgcatc      4800
     ctatagaact aggtcctata aaacaagtta ttgatttttt atattcagaa gcacaggaaa      4860
     aaattatcta tgacaaatta ttaagtccaa ttataaaaac aaaaattgaa aaactgtccc      4920
     ttacatttag aaaaattcaa tcatcagaca aaagagtaaa aagatgggat agcttaggga      4980
     aaggttggaa gtacatatcg ggaagtcctg atgccgatga tattagacta attaatgcaa      5040
     ctataaattc aatgatagac caggaaaaca accagatcag gattaattcc gggttggata      5100
     gcaggattag gaacataaca tacagtataa acgtccttat ctccaagttc agtagcctgt      5160
     caacagagtt taacgaagga ttttcttcgg tcaacctact cttcaatata gatgagctga      5220
     tccaacaagt cgagacaatt ggcgaagcca taaccttagc acgagtaaac atcccgagca      5280
     gcagacttat cagcctcacc gagttggctg tagcacaaca gtttttgaag gatcaaggac      5340
     tcgacgtagc cacagcggaa agtgtacttg aaattgctcg agcatacgtg gtaactacca      5400
     gggaatccat aaagtatata ttaagggtac cgaaggtaac aaacgaaatt tacactctct      5460
     accaagttga accagtaata tctaacggaa ctagagttca acttgacgcc aacttctacc      5520
     tgaatggaac aactccgtat tgttcaaagt caatctgcga tcaatatgca gaccacttta      5580
     tttgtcaatc ttcgcagctt gagtctccat caaaatgcat ccagaaattg atgagcggct      5640
     cctcagcgca ctgccccatg gagaaagtct atggccgaaa cattatcaaa cggatcaacg      5700
     atgctacaat catcattcac gaagcagaca tcacgctcaa atcaaactgc agcatgcata      5760
     ataacaaatt ggaagggtct tatcttatcc aattttcaaa atgcgcaata tcgttagacg      5820
     gtgagcggtt caccaacatc aacgtggata tcccaagcaa gactttcatc ccgaccaccg      5880
     gattgaaggt aaatagcact aacctagtgg atcgcattcc tctggaacat ttacagatac      5940
     ttcatatgac gcatcgtgac catattcaac atctgaattt aactaatgag agcattcaga      6000
     caaggatcca ctttttgcac tggctatctt tcggatcgat atcggttaca acccttaccc      6060
     taattggaat cacgctaggc tgcattatca agacactttt gacaaaaaag gcaacggtga      6120
     tcattcaaca aggccaacgc gaggttgagg atacatcatc aggcgaatcg acgcaggaca      6180
     tcagcatgaa ctacacaacg aggcatccca ggttcatccc gcaataggcg aaaacggaga      6240
     aagtcgagga cgacctttct tctaaagagg gaaat                                 6275
//
ID   Gypsy-512_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 25.10, Created)
DT   25-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-512_;
KW   Gypsy-512_AA-I; Gypsy-512_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-202
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-202
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3137-3137 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 202 BP; 58 A; 40 C; 48 G; 56 T; 0 other;
     cgttagggct cactgctagg tagattaagc caatcagaac agtcggcata tgtcacgcca        60
     cgtgtgaaag tgtagagtaa gcagttttag tgtaataaat aggaacggca cacgaggttc       120
     agacctcttt catcgttcag tgtgcgttgc agtcagtttt gtcatttttt aaaaagaacc       180
     cccgactaga taactcgtta ag                                                202
//
ID   Gypsy-513_AA-I repbase;    DNA;    INV; 6676 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-513_;
KW   Gypsy-513_AA-I; Gypsy-513_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6676
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6676
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3110-3110 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >97% similar to the consensus.
XX
SQ   Sequence 6676 BP; 2172 A; 1286 C; 1529 G; 1689 T; 0 other;
     attggcgccc aactaaaaat agcactggtc aaggattcaa gtgactgctc cttcggagtg        60
     aatgaaaagc taggttatca aattagtgaa tttcacggaa aacgcgtgat tgcaaagaaa       120
     ttaggttatc caatttaaac aatagatttc ttaagaattt aatttgcaaa gctagtgaat       180
     tcaagccggt agcaccaatt tgttcttgcc cataaagtga aaagtttcga gataccatac       240
     tactagtgcg cgaacactca cagaagctca cagtgttgta gtgttatcac caaatagcga       300
     aaattagagt tcgattaaaa aaataagttc aaattatttt gttaatgggt cttgattcga       360
     caaagaatcc aaaaaagtga atgtttcatt gaaattgtgt gccttttgtc gatcggatat       420
     tgtgcatgaa taaaacgatc acttacacaa tagccagctt ttattctttg aataacagcc       480
     attcaaaaga acaatggatc tacagacaat gtacgcatcc atggatgtct cccatctttc       540
     agtcgatgag gttgaatacg aattactgat caggaacatt ttgtttcact tcgatgaaca       600
     cgaaagtatc aagcgaagaa aactcaaaga tagattgaaa agcgaaaagg aatcaaaaac       660
     gttctctttt tctcaaccgt ggcgaaatgt ggatgaagaa ttagttacca taagctccaa       720
     gttaaaggtc atagggggtt tgcttgagaa ccctaaaaca gatgctagac aacgtcagaa       780
     actaaaaacg cgactagttc attatcgagt tcgtaactac attctctcta aagccaaagg       840
     cgcggataat ttcagggacg aaatcggaaa agtgggccgt catgctacgg aactatttag       900
     acgattttat ccagaagtga atgaagccga cgttcattca aaagattcag aacagctaga       960
     atcggatttg aatgacgcgc tagaggaggt tagaactgaa atcgagattc tgaatgaatc      1020
     aacagtgaca ggaaaagaga tagaagatca gctagagcag acagaaaccg caaaccaaac      1080
     gttagaattg aagaagagag agatgaatga atcagttaaa cggtcggaag agattttgaa      1140
     agtgcttgct gagtatgagg aaggaaaaaa ggaaaatccg ctagagctta tcgcggtttt      1200
     caaatcgttt gttcaacaga ctactgaaca acaaaaacag atgagagaaa aacagattgc      1260
     tgaagaggaa aaacgtttga gggaagcaaa agaggctgta gaacgaagga agagattgga      1320
     gaaggttttg atcagtttaa acgatcgcct taaaaaagag ccagaatcgg tagagaagac      1380
     agcggtgaaa tgttcagtgc aggaaaacag agggttagga gatgagaagg taggggagaa      1440
     aaggattagc tttcatcatg attctgatgg ttataaggct tattccaagc aggatagttc      1500
     cgaggatagc agagagagta cagaattcaa atcgaaaaag gagaagaaaa cattcaagaa      1560
     gggatgtagg acatttaaac gggagaatca aagacgtcgt aggccaagct actcgtctac      1620
     ttctagtacc acatcagaaa ccgaaagctt cgagtataac agttcagaaa gtaggtcaga      1680
     ttcgagcact gatcgtgcca agagaagggg aaggagagaa agtaggagaa attgggatct      1740
     gaagagaatg cctgttgctg agtggagact aaagtacgat gggaaggatc agggccgaaa      1800
     gctaaccgaa tttttaaaag aggtaaaaat gagatgcatt tccgaggata tctctgagaa      1860
     agaactattt aggagcgcca ttcatctttt ttcgggccgt gcaaaagatt ggtttattga      1920
     gggagttgaa aatagagatt ttcggaattg gcatgagctg aaaagagagc ttaaacggga      1980
     atttttgccc cccgatttag atttccagct tgaagtgcaa gctacagagc ggcgtcaggc      2040
     aaggggtgaa aagtttactg attatcttca tgatatgatg aaaatttttc attcgatgac      2100
     ccgttcaatc tccgaacgca ggaagtttga catcatttgg cgtaatcttc gcttcgatta      2160
     taaaaacgcc atgaccggtg caggagttag atcgctgtcc aagctgaaaa agtacggacg      2220
     cattattgat gagaataact ggagcatatt ccacaaatct cacgaaaata tgggccgtag      2280
     tagaaatgct caggtccatg aagttgctac aatagattcg cagaagtcta aaagctcttc      2340
     ccagaatgta aactctgcat cgcgcgtttt tactcggagc aaacctaaaa gtgatccaat      2400
     agataaaacc aaaccattat cagagacgaa aatatcaggg gagaagaagg gagaaaaacc      2460
     tgctgatcca gtagaaggct catctaaaag cactctggtg gaaatggctg agaaatatcg      2520
     gcggccaccg attggagtgt gctacaattg tagaactagt gggcatcatt atgctgattg      2580
     ttctaaacca agaggaaagt tttgtagaat ttgcggcttc ggagacgttt tcacgaacgc      2640
     ttgtcccgtg tgcccaaaaa acgaggcggg ttcagcttga ggaggcaagc tgaagcaaat      2700
     cgccaaaacc ctccaccaaa caatcagacc tctgatgaac aagattttag tggattcgaa      2760
     acggtctcag agaatgacta ctctcccgtg tctaacgtgg atgaactttt agttcgtgtt      2820
     gacggagaca cccgaccgtt cgtgaaagtg agtgtgcttg gtagagaaat tctcggcctg      2880
     ttagacagcg gtgctcaccg ctctgttttg ggagcaggct gcaaaaagct tatcaagctg      2940
     ctgaaattaa aagtgtttcc atctgaagta cacgttgaaa ctgcttcagg gtcaaaagta      3000
     gaggttgagg gatttgtgta tttgcctatc acattcaaca acgaaaatcg aattattaag      3060
     actctcgtgg cgcccaaact gaaaaggaga ctgattttag gtttcaacga cttttggcga      3120
     gcttttcaga ttcagccaat tgtcttaagt cgagagtctc gaaagaggga agaagaattg      3180
     gaggaaaatt taaggattga agagttggag tggaaggaga ctggggagga aaaagaaact      3240
     ctcaacgaag aacaaaaagc tcaattagaa gaagttaagc ttaaatttaa aatagcactc      3300
     gaggggcaaa ttttggatgt aaccccactt gctactcaca cgattgagct caaagacgaa      3360
     tttaaaaagc tacctccgat tagaattaac ccgtatccta catcacctga aatgcagaaa      3420
     cgcattaatc gagagctcga taaaatgctg caacagcagg tcatagagcc tagcaaaagt      3480
     gaatggtcac agagcaccgt cccagtaatc aaaccaactg gggaagtacg gttgtgtcta      3540
     gatgctcgac gccttaatga gagaacaaaa cgtgacgctt atcctctccc acaccaagac      3600
     agaatattga gcagattggg tgcaagcaag tatttgacaa ccattgatct gacaaaagct      3660
     ttcttgcaaa tacctttgca cccagattct cgaaaatata ctgccttctc ggtgttgggg      3720
     agaggattgt ttcagtttac caggctccca ttcggtctag tcaatagtcc agcaacattg      3780
     gctcgactaa tggatgacgt cctggggtat ggtgaactgg aaccgaatgt gttcgtgtac      3840
     ctagacgaca tcgtcgtagt gaacgacaca tttgaagcac acatacaaac ccttactgaa      3900
     gtagctcgtc ggttgaagac agcaaacttg tcgatcaacc tcgacaaatc ccgattctgt      3960
     ctgagagaat tgccttatct gggctatatt ctctccactg aaggcttgaa accaaacccc      4020
     gatcgaatcg aggctatcgt aaattacgag agaccagcct ctctaaaatc tttgcgcagg      4080
     tttctcggga tgaccaatta ttataggcgg tttattcccg gattcagtga gatgtctgcg      4140
     cctctcactg atctcctgaa gaaaaaaccg aaatctctga tttggaaccc gagagcagaa      4200
     caagctttct tacagctgaa agaaagtttg attgcctcac cagtactcgc aaatcctaat      4260
     tttacactcc cctttcaaat tcaatcagat gctagcgata gcgcaattgc agcaatcctg      4320
     acccaacagc atggagaggg tgagaaaata atagcttatt tctcccaaaa gctctcacct      4380
     gcccaaaaag cttacgcagc ttcagagaag gaggggttgg cagtcttatg cgcaattgaa      4440
     aaatttcgtc cgtacataga agggaccagt ttcactgttg tcacggatgc atcagccctc      4500
     acccacatta tgaagggtaa gtggcgtacg tcctctagat tgagtagatg gagtatccaa      4560
     ttgcaaggat acgacatgga gatacggcat agacgcggga aggataatgt tatcccggac      4620
     gcgctatccc gctcggttga ggtatctgag gtcctttctg atggagacgc atggtactct      4680
     aatctgttca aaaaggtaga aacctcgcca gacgacaact tggattataa aatcgaagac      4740
     caaaagcttc tcaaactggt tcccaacaaa acagaagtgc tcgactatcg ccatgaatgg      4800
     aagctctgtg ttcctgagaa cgatagagag cgagttcttc aacacgagca tgacgagtcg      4860
     cttcacatcg gctacgaaaa gctcctggaa aagctgagaa ctcgatattt ttggccaaaa      4920
     atggctgaat gtgcgaaaaa gtatgtgagt aaatgcccag tgtgcaaaga atgcaagccc      4980
     agttctgtat ctcaacaccc gtcaatggga aatccacgat tagcgacaaa gccctttcaa      5040
     attgtagcgg ttgactttat acagtcttta ccacgatcca aacttggaaa tatgcatcta      5100
     ttcgttctcc tagatttatt ttccaaatgg acagttctag ttcctgtcaa gaaaatttca      5160
     acagaactaa tcgtgaaaat cctcgaagaa cagtggttta ggcgctattc agttcccgag      5220
     attatcatca cagataatgc caccagtttt ctaagtcacg atttcaagaa ctttttagcg      5280
     aaatatgggg tgaaacattg ggcgaactcg cgccatcact cacaggcgaa tcctgttgag      5340
     cgattaaaca ggagcataaa tgcatgcatt cgcacttatg tgaaatccga tcagcgccaa      5400
     tgggatacta ggatttccga aattgagcac accatcaaca acactttaca ctcgtccaca      5460
     agtttcacac catatcgcgt cctatttggc catgaaatag tcactaccgg tgaagaacat      5520
     cggagggatc cagacacgtc tgagatttct gaaacagccc gtaatgagca acgattgaag      5580
     gttgatgaca ctgtttataa cctcgttcgt aaacatttgg agaaggcaca cgatcgaagc      5640
     gctagagcgt ataatcttcg cttccaaaaa cccgcacctg tgtatcaggt tggtcaacgg      5700
     gtatacaaaa gaaattttgc acagtcgtcc gctggagaca attataacgc aaagcttggc      5760
     ctagcgtacg tgccatgcac tattgtctca agaagaggca ctagctcata tgagctcgcc      5820
     gacgaaaacg gcaagaattt aggcgtattt tctgcagccg atataaaacc aggtattccc      5880
     gaatgatcag cacgattttc tccactttgt agtccaggtt ttagtagttt aagtttaaaa      5940
     tatccactaa ttttcagagt tttgtactcg gccgtactca acgtgtccgc gtcggtcgaa      6000
     agtattgttc tagatcatga tcgtattgtg tgtgaagagc taaaattgct agagtgtgaa      6060
     attgatgtag atgaatgtag gtacccgttt tttgttgtag gtctatctct gtccgataaa      6120
     agtagaatat caatgttgca atagtctgtt gttatgagga atcgtagctt gcgtgtgagg      6180
     aagacgactg accaatggaa taagacttag agtgaccaaa ttcttctccg cagtttgcag      6240
     gtttttttta aacgcgttga atctgcacta cgactcttcg taattactcc gtaataccaa      6300
     atccacaaaa atctatccaa aaatgcattt aaaatttgaa acaacagaaa atagtaccca      6360
     ttcgatcgat ttgcatcaag taaatgcaca agcatagttt ttgttttggg tcatctttca      6420
     caaaacttca ctgttttggg taatttggaa gatgagaagg ccaagtaaca gaatcgggga      6480
     ttaaagcggt acagatggca ttccaagtat gcaggaatga actatctggt gattacacgc      6540
     gacaatgtct gtttttgaga aagtcgaatg cataaaagtt gcatctcaaa cctggtatgc      6600
     tacttcgtta ggtaaacttt ataaaattaa ttgttaataa attatacaat taattttggg      6660
     gggagatagg aggtgg                                                      6676
//
ID   Gypsy-513_AA-LTR repbase;    DNA;    INV; 1010 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-513_;
KW   Gypsy-513_AA-I; Gypsy-513_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1010
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1010
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3138-3138 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1010 BP; 311 A; 267 C; 205 G; 227 T; 0 other;
     tgttaccgtt gagatacgct aactttgtta attgtttgtt aagaataagt ttgttaattg        60
     gttagtattt gttagtagag ttaatattat attgtgttaa ttgttatcct tctgtttgtt       120
     aaatgttagt aaactattag aaaattagga tatatgagaa caaaatttgt taacacacta       180
     tcaccataca ctgaacaagt ctaagacaac acacataata ttgagccaaa aaggggaaaa       240
     cgggttgcca cagttaaacc cacatcaaaa agagaaaata aaggatgaaa gggacagagg       300
     gaaaagggac aggcatctgg gtcgaactga gctaagagca aagcctattc aagttagaac       360
     ctcgaggcaa ccagttcgca aatccaacca tatacccggt gtacttaaaa taaccgttgg       420
     tcaagttaaa gttcgttcga cagctataac cgaatcaggt atgaaggaac caactaccaa       480
     cgacagttgg agtaaatcct gtcgctcggt ttaaccgttg cccgattccg ttctccctca       540
     ggacccatta ttataggcca attccgcctg gtatagccac cagccaccca gagcatccaa       600
     gtggcttcag gagtcatccc agagacccag accgtcgtgg agagccctcc gacacccagg       660
     acgtttggtg gacgctccaa gaatcgacat cccctccgca gccatcgccc agccgccatt       720
     cgtgggcatc cgtgagctcg aagagcgttc cgctcgcccc agaaacccgt taccatcagg       780
     cccacccgaa ttcagcccag caacccccag gacaaccctc acgtgctcca cttccggccg       840
     gccgcaacgt tccacactcc acacccagac actacacaca ccagtaagtt aaaaaaatat       900
     aaagttaaaa gccaaaaaag tgagttttac ttgggttctt gaccagctcc aacgtgccga       960
     ccctaagagt ctcaccccta aggcaggtcc ttccgacccg ccagctaaca                 1010
//
ID   Gypsy-514_AA-I repbase;    DNA;    INV; 4532 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-514_;
KW   Gypsy-514_AA-I; Gypsy-514_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4532
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4532
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3111-3111 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >97% similar to the consensus.
XX
SQ   Sequence 4532 BP; 1255 A; 926 C; 1009 G; 1342 T; 0 other;
     attggcgccc aacgtaaatt ttgcgaaaaa atcttcgatt ttttccactg agcgaggggt        60
     acttccacca aaatttggat tttgggtgga ataaacacag tggtggggac tttttccaca       120
     atcgcgtggt cgtttaattt atttattttg tgtttgtcat aacctaaatc ggtaaatcgt       180
     ctcgtctgcg gaacgaattg gggcattttg ggtctccttg ttctcagggc gggatttttg       240
     attttcctgg gccgatttgg ggtggcattt gattcaatct ggtgacctaa aatcattttg       300
     gaaccgtcag tgagcgaaaa atagttcctt accgtattga tattttactg aacagttggt       360
     aagtttgaat ttgtccatat tttgaagact tgtgttgctt tttcatcaaa atgccgttcc       420
     atactttgac gttgggggag ttcaacgtcg cttattttca tttgcgcccc gatcacttac       480
     agcaagatga aattgaattt gaattgaact cccgcagtgt tgtcgtccct cctgaatcgg       540
     atcaatccgg ttcaaaaagg cgtcgtcgat tgcgggggtt gttggtcagc gagctgaata       600
     gctcggaaac agctgtccgc tcttatcaag gggatgttga agcggaattt gaactctgtc       660
     gtggcaagtt tgagtccatg aaggaagatt tggggtacag gtgtccgaat aaggaggttt       720
     accgaagcag attgcttcat ctgggtgtcc ggctccaaat cgtcaaaaat tacaccgtag       780
     gggaggttaa caaggccttt gtagaccttt taggcgatgt ggtagccctc cataactacc       840
     acttcgcgag tactgtggcg cctcctatca cgccaaatga ggaagaaaag ggggatgaag       900
     aggaagattt attggcccaa attgccgcgg gaaaggaagt tttatcggat ggaaataacc       960
     aacttctgga tgataaagct tccgacaatc aagttgtggg agaagaaatc cgcgatgtct      1020
     tacttgacat aagggcggag attaaaaaga cgcaagaaca gatcaagctc agcgagactc      1080
     ggactgcatc tagagtggac tcacttgaaa atgtagtcaa aaagctcggt agtggtctgg      1140
     cgtctattag tacgattgcg tccgaactgc agaaaactaa tcacgaagtg caaacacttc      1200
     gtgacaaagt ttctgagtta caggccatcg ttgacaatat aatgcctaat gtaaactccc      1260
     agagtttgcc ggtagataca cccaatcttc agtatcaaac aattcccaat ctaccggatt      1320
     tacctgattt cgatcaggaa acattagaag gatttggtaa tcaacagaac ctgaaaaggc      1380
     gagcgcccat gcacggccag aactctggat tatcaaatca taattttcaa agacatctcg      1440
     actccgataa tgtagacaat tctaaaattt tcgagaagct tgggccttcg ttgtattctc      1500
     aaaatttctt taaacagcct acatttccaa acttcacgct tccgcgtaaa ccggaaagtg      1560
     tagcatcggt ggagatcacc ggttaccatc gtcggcccca acgggttgcc gattggaaaa      1620
     ttcgaaagta tgctgggaat gacgaaggta tggggcttaa cgaatttcta gaatctgtcc      1680
     accattatgc ggagtctgaa caaatttccg aagaagaact gttcaactcg gcaatgcatt      1740
     tgtttaccgg gaatgcctta gcttggttcc aagcaatgcg ttcccagaaa cggttttata      1800
     actggaacca cctggtttgc gagttaaagg cgaactttgt tcacccagaa ctcgacgccg      1860
     cgctgaggat gaaggcatcc cagcgacgcc agcagaggaa tgagtctttc caagatttct      1920
     atcttgagat agagaaaatc ttccgtgcta tgtccacacc gcttagtcca agtgagaaac      1980
     tggatattat caagcgaaat atgaggcctg attacaagca ggtcctaata tttaaaccgg      2040
     tgaacacatt gcccgagttg atgctcatcg gaaaaacaat tgatgcttcc aagatttcca      2100
     tttaccaaaa agtatttgga aattacaagg aggtatcaac tatttcaagt cagcctgcct      2160
     tcaatggttc tcggcagagc cagcagcagc aacaatccaa tgaaaattca aatgggtaca      2220
     gaccgagggt attctacaac aagaatagtc ctccatcttc accgaaacgt aacagacctc      2280
     ctcctcttcg tttcaaccaa acaggaggac aaagtcaaag aaatctccaa gagaagactg      2340
     ccacaagtcc caaatccaca caatcgcagg aaggcgcatt ttgcttaccc tccttggtgg      2400
     acaaacaccg tccaccaaat ctaggagtgt gctacaactg tggaactaaa gggcatgaac      2460
     acgatgagtg cttcaaaccc aagcgtgtct tctgcatatt gtgtggattc aagggatttg      2520
     aagcttctca ctgcccttat tgtttgaaac atgggattag gtccaattaa gaatattggt      2580
     actataatcc ccaaaaattt caaaataaaa tttcccgtag ctccggacgg taccaatttt      2640
     tcaaattatt ctccttaaaa attttcctgt taaactcttt cattggtaca ccgcgagtga      2700
     ttttttcctt caaaaacttg gtatccatta ttttgatcca ggcatccgtt gaatgatgat      2760
     catttctacg atgacctgca agtaaaacat caagttttgg gtgagattgt aaggtaggca      2820
     gctggaacgc tagttaaagt gtctatctct cgtgcattct gtgacaatcc aagtttgtcg      2880
     aaccctcaga agtgaggcaa caaggataat gtcgttacat catggacacg atcgctagca      2940
     attacactac ctaaatcaca atactcaccc aaaatcgaat ttcatcgctt acaacttggt      3000
     tgacccgttg gtatgggtcg gtgatctttc ttgaaccagc gtgaaaactt ccattttcct      3060
     cccatcgatt ctgcacaatc ggcttcatac ggttgctcac ttgggagctt ccgaagtacg      3120
     agcagaatcg agggcggatt cattctcgcc aatcacgctg gaaatcatcc ctctttcctc      3180
     tggagctggc cccataaaac ctttcgggca cctcccattt gtgccgggtc tctttgagcc      3240
     ctgggttatt tacattttct tccacacgga aggactaaaa caccacgatc gtgatgcttt      3300
     tcgttcgaaa gcatcaaaac ctcgaaaacc ttcaacaatc acgtttcgcg aaatcgcttg      3360
     acgatgcgac cggattggtt acttacattc caaatcaaca tcttccttcc ccgcagtcgc      3420
     atgacgacgt caaaaaggaa tcaccagctt tccttttgct gacagttatg cgggtgtggc      3480
     gagtaaatcc gcatttacgt attttattcc gattcatgca ggaggtcatt tatgtatgcg      3540
     cctttgtata ataaatgtta tttctatgta aaattcccgc gcatagatgg caacactttt      3600
     taaacctttt ttttaatttg tttgtttctt cgttgtttta atctgtcaga accagggaaa      3660
     ttcaactgat tccgcatgga atcagttcgg aattaccttg tattcgcatt cggtgtcttg      3720
     ctcaagtata tctgtaaaag aaatacttga tgcgtaaaag actatacctt gcgtccttat      3780
     tgtctagtcg ttttcggtat tttgtgtgtt gtatgaatga gcaaatgttt tatgtgaatt      3840
     gaaatattga atgaatgtat aagaatgaat ggttaaaatg aatgagtgtg attgtgaaat      3900
     ggcgggggtt cattcagtta tcttgtttga tcgtgtgagc gtgtaggcca gtgaatggga      3960
     tgaatgagtg gcacattttg gatgaatgtg gattgaattg aaaccccttc tgtttggtta      4020
     atatgaatac cgtcaggacg ggaacattgg acgtcaaaaa aacataacaa gaaaaaaaaa      4080
     caaaaaccac gacaaccgtt cctctgctat gcttaacaat ccttgaccgg aggctagcag      4140
     ggttttggga agttgggttg ttttgggtgt tgtcctgaat tggtctgggg gagttgagga      4200
     tctttagctc tcccattgag aaccggatgt gtcgagggtg gtctggtgcc gttaatagcg      4260
     acgggtccca gtccttgtct gcagacaaaa ccatgagacg atgtaccgat ttagattttg      4320
     ttttgttcgg tcgtttccct gattgtttta tacttatttt taatcagaat ttgtggaaaa      4380
     tgtctttggt taggttaggc agatttttta tttacattta tttatttatt tattctttta      4440
     aatcgttatt tattatcatt gttatcggtg ttaggtgtta gggttagtca aaaaaattgt      4500
     tgccaatttt tttttctcgg tgtgggcgag at                                    4532
//
ID   Gypsy-514_AA-LTR repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-514_;
KW   Gypsy-514_AA-I; Gypsy-514_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1294
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1294
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3139-3139 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1294 BP; 333 A; 269 C; 338 G; 353 T; 1 other;
     tgtaacctgt ggttacaatt aagctatttt gagtaatttt tgtgtagtgt gtattttaca        60
     cctattttta cccacgttgt tttccgtgta ttatttaccc acatttgagt gtttttcacg       120
     tggcgtgttt aatgtcacag tgttgtgktg ttttggtccg aagtaatagt attggttggc       180
     aacataatcc accaccgtgt tttgaaaata ttttaatctg ttcgtttttg catttatttt       240
     tatttgaaag gtgtaggtag agtatttgaa atgtatggaa aaaattatcg ttttgattgt       300
     ttcggtgagt gcaataaaaa tagttctcgt tctcctcccg ttgcacaaaa agcgacactg       360
     agcataaaac agcataacag tcgagcacgg tggcaggaga cgatgctttg tgtgttggtc       420
     ggacgatgac gttttaaggg ggagaaagtt tcgaaccacg gattgcgacg gtcgcgttct       480
     ttttggaatt ccgtcaagta ccgcccgaaa agtgccgttt cgcgagtgaa aacgtgcgaa       540
     aagcggtaaa cgaaagctgg aagattgttc ccagcacggt cgggagtaag attaagtggt       600
     tccccaccgg aaagtgccgg cccgtggttc gggaacgaga aaaagtgcag tgaaagtgct       660
     gtaaagaaag ggtaaggacc gccgccatag tgggaagcta atcgttaagg agttttcgct       720
     tcccggcggt cccgtcaagc gtcctacacc cgccgttctc actgtggggg ctcagtcaat       780
     agagtttctc gcccccacag ttaatcgcca aggagaacga agacagacgt gtaaaaaggg       840
     gcttaccgtc tgtggtagta aactgcggtt tctaccaggg ccttctacgg cgagtagttg       900
     gtccggtgtt tcgacaccaa cgtcgctagg gggggtccga caaaggagtc aatctcctcc       960
     ccctagctaa tagtcaagga tagctgcttc gtgcagtttt attgcccagt gaagtgagtg      1020
     aagaagaaga agaaacagaa gaaggagctt cgcacagccc gtgcggagcg agaaagccaa      1080
     cgaccaccgc cactgctgct gttcatcgaa gggccccaac gagtcgacca acgagaccag      1140
     tgccgtagta agggaggaga aagaaggtca gattagaata taggtttttt aaattgatat      1200
     atttctctct ttttcccatt ttaacccatc cgaaaaccag gtttagtgta agtaccctgc      1260
     tctaggccgc cctgccgggc tgtcgtttct taca                                  1294
//
ID   Gypsy-515B_AA-I repbase;    DNA;    INV; 7999 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-515B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7999
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7999
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3182-3182 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 7999 BP; 2358 A; 1947 C; 2099 G; 1550 T; 45 other;
     ctggcgccca actgaaaatc cacaatacat tagctaccgt tagcaatttt ttttttggtt        60
     tgtgattcag acatttggtt ttgtgcgttt gattattcgg cctataataa tcaacaaata       120
     attttaaccc ttacgcatag aaataagaaa tggattacac acatttgacg gacgaagagg       180
     tcacgtatga gttggcccta cgtcatgtag taaatttagg acctaccacc catagaggca       240
     aggtcttacg tctcaaggca ctcatgcaag aggagtcctt gcgagacaac cagcccacta       300
     gctcatgcca tgtaatgagt tcacagtcaa acattgagca ctgtgaaact caaatacagc       360
     agttgcacat cagcactgaa gcggcaattc gcactaacga tagtgcagcc ttaaataaaa       420
     tccgaacacg tctcaatcat tatcgcgacc gtttgcaatt aatccgctct ccggtcgagc       480
     tgcaggaaac acacgcaatg ttatccatgc atgttaacgt gttgttaaac aaagtgaacg       540
     gaacaagtgt agtaaatggt gcacaaatgg gggaaagtga agtcagagat acaacatcaa       600
     ctggcgctgt gaggaggagg agcaacaacg agtcggaagg agctgttgga ggagtagtag       660
     atgccacaat ccctgtgggc agcaactcca ttcaagaaac cacaccaccg ccagctgtgc       720
     agccacctct ggtgccatcg ttttcgggtg gacacggaag agggctgttg ttctctagct       780
     cgttccaagc aggcgaccac gaagactgcc gacaagcgga atcgagacgg cgaagaagtt       840
     caccacctcc tccctatctt tctcgggagt atgcaggatg gaatcaacag gcaagagaaa       900
     ccccatcgca agaagcgctg gaagtgagaa tcaggcagat gcaggagaga gaagagcgga       960
     tgcgagaaga atgctacagg atgcgagaag aactggagcg gctgatccgg cgagaacgac      1020
     cagcaccgga gcgagccgac gaaaggagga tgcagaaggc ggtacacaac tggccgttca      1080
     agtttcgtgg cgagaaggat accacttcac tcaacgtctt cctcgaccgg gtggagacgt      1140
     tcgcgaggtc ggaaggcatg agcgatgcga cgcttctcag ttccatcaag cacttgctgc      1200
     aagaagacgc tatcgactgg tacgcccgtg caacttcgca gcgactgctt cttacatggg      1260
     acgactttaa gcgacagatt cgccgagaat tcttgccaag cggatactcg cagattctcc      1320
     gtctagaaac ctgctttaga ttccaaggaa gggacgagtc gtttgcgaag tactaccgcg      1380
     acatttcagc actctttcgc ttcgtagacc cgccgatccc ggaggacgaa aagttcttcc      1440
     tggtgaagaa gaacatgaac gagagctacg cctccatcgt aacggcagca aggccacgaa      1500
     cgttggaaga gatggtcgaa gtttgtaccg gatacgatga aacgaagatg cttctgaaca      1560
     gacagcgcag aattccgatt ccgcacagtg cgctactcga gccaaacttc gcgacgccag      1620
     taacgaccaa cagaccggca ccaattcagc aacagcaacc accatatcgt ttcagccgag      1680
     tccacgcagt ggaagtggag gaaaattctc cagaaggcga agcagttgaa gcactggaag      1740
     atagctggca acactgcttc gacgacctcg ttgaacaagt caacgcactg aaaatgagct      1800
     tggagaagaa gaccgcacgg ccgagcttcg ctatacgtaa cgagaggcag ccgagaattc      1860
     cagatgtggt caaccgatcc gaggaagagg ttcctcaaca gtatcgtcag cagagcagga      1920
     ccacacaaca aattcccaca cagcagtacc gaccgcaacc tggaccaaac cagcagcgtc      1980
     agccgtacca gcagcagcag cgggatccgc agaggatgca aggctggcaa gcgcgcagat      2040
     ggatgccgag ctcggtggaa gagtggaccg acagcaatca gcgtaacaat cttccgcagc      2100
     tgcagcaaga accagaaagg caggttgaaa ggcgttatga ggaacggcaa gaaacggcga      2160
     accatcagcg tctggcgatg gtctgctgga actgcgatga ggaaggtcac aggttcatgg      2220
     attgtcccaa accgcaagca attcttttct gctatcggtg tggacggaag ggttactcgc      2280
     tacgtagctg tttcacgtgt cgcaccgaca cgggaaacta ccccgcggag aaccagcttt      2340
     agaggggagc ggctcttcgc caactctcgg acacccctcc gagaatccag aattcaagaa      2400
     ccttgactca atcatcataa atcccggaag cgacaaccga ccgcacgccg tcatatcggt      2460
     gctaggaaag gaattgaccg ctttgctgga cagtggagcg aactgctcgt tgctcggagg      2520
     aaaaagagcg ggactggcag agcaatgcgg tctgcaaaaa agaaccgtca agggcggaat      2580
     aaaaacggcg gacggcacga agcatgaaat caccaatttc gtctatcttc ccatcgtgta      2640
     caacaaccgc aacgaagtgc ttccagtact gctggtaccc tcgatcccgg attgcatcat      2700
     cctaggaatg aacttctggg acaagtttgg agtgaaggct gtgtgctgca caattgaagc      2760
     aaagcaagac gaagaagtcg tcgaggatca tgagatgaag caactgtcgt ccgaacagaa      2820
     gaagcgacta gaacaagcga tccggaagtt cccaaaagcg gtagagggca aactaggccg      2880
     tacgaagctg tatgagcatc gcatcgatgt gggcaacgca ccacctcgca agcaacggca      2940
     ttatccaatg tcaccgtatg ttctgcagga ggtgaacaag gagatcgacc ggatgatcgc      3000
     cctcgacgtc atcgaggagg cacagttctc tccatggaac aacccattgg ttgctgtcaa      3060
     gaagaagacc ggtcagtatc gcgtctgctt ggatgctcgt cacctcaact ccatcatggt      3120
     gaacgaggga tatccaatcc cgcagatagc agcgattaca aacaatcttc gaagcagcaa      3180
     atacatctcg tcgatcgatc tcaaggacgc tttctggcag ttgccacttc atcagacctc      3240
     aagaccattg accgcgttca cagtgccatc cagaggccac ttccagttca aagttgtgcc      3300
     ttttggactg tgtacagcga gccaagccct agcaagactc atgactcatc tgttcgccga      3360
     tttggagccg ttggtattcc attacctgga cgacattatc atctgctcgg aaaccttcga      3420
     ggagcatatc gctctgctgg aagaagtggc acgccgactg cgacaggcga atctcacgat      3480
     atcgtcggag aaatccaagt tctgccgaaa gagcatgaag tacctcggct acgtgattga      3540
     cgaacaaggc tggcgagtag atgaagagaa gatccaagca atagtacagt ttccgactcc      3600
     aacaacacga aaagaagttc agcgattcct tggcgtttgt aattggtacc gtcgcttcat      3660
     cgccggattt tcacagctag cggcaccgtt gacaaacttg acgtctggca agacmaagtt      3720
     ccgttggaat cccatcgccg aagaagcttt cctcaagcta aaggcagctc tggtctcggc      3780
     accggtgcta gcgatgccgg actatagcag accgttcgct atagcgtgcg atgctagcga      3840
     cacagcaatc ggagcagtac tcacgcagga caacaacggc gaagaacatc cgatcagcta      3900
     cttctcgcag aaactgtcag cgtctgagaa gaaatattcg gtcacggaac gagagtgtct      3960
     cgcagtgatc cgagcgatag agaagtttag aggatacgtg gaaggaatca ggttcatcgt      4020
     ctattgcgac catgcggcgc tcagctacct aaagtctatg aagaatccga ccgctttgat      4080
     gagccgatgg ctgttgcggt taaacgcgtt cgacttcgag atccggtaca gaaagggatc      4140
     gatcaacata gttccggacg cactctcacg aacggtagcc gaagcagttt tcgcggtaga      4200
     ccaggtgcaa gatccgtggt atagaaagct ggtagaaaaa gtgaagagcg agggcgatca      4260
     gttcccggac ttccgcatgg cgaacgacat cttgtacaag aactgtcgct gcaaggacga      4320
     agttggagct gtatcacaca aatggaagca agtcgttccg agagaggaga gggtgcagct      4380
     gatccgtaga taccacgacg aacccgcagc agcgcacctt ggcttttaca agacctggca      4440
     caaaattcaa gcccactact actggccaca gatgcagcaa gagattggcg attacgtgag      4500
     gaactgtgta acctgcaagg catgcaaagc gccagggaag aagatgatgc cgcagatggg      4560
     aaaccccaag ccagcgaaaa ctccgtggga gatgatatcg gtggactttg tcggtccgct      4620
     cacacgttcc aagcgaggaa acacagtgct attggtggta gtagactggg tcagtaagta      4680
     tgtgatcgtc aagcctatgc gcgcagcaga ttcacagaag atggtggagt ttctagaaga      4740
     agaagtgtgt ctaaggtttt ctcgtccaag gctgatattg tccgacaacg ggaagcagtt      4800
     cgaatcgatg gcatttaaat cctggctagc gaaacacaag attggccaca tgaaaacagc      4860
     attctactgt ccacaggtca ataatgccga gcgcgtaaac cgcgtcgtaa taacatgcat      4920
     ccgagcgttg ctagatggcg atcaccgtga gtgggacgaa aagctgccgg caatcactgc      4980
     agcgataaac ggagcgaagc atgaagcaac gggagtgagc cctcacgaag caaactttgg      5040
     acgaaatctg ctgttgcaca cggacctcta tacgcagcaa gaactcaaca caccagacga      5100
     cccgaaggta gcacaagatc tcaggctatc ggcaattcgc cgaatccaga agctcataat      5160
     cgagcgaatc aagaacagcc accagcgggc gaagcagcgg tacaatcttc gtacaagatc      5220
     ggtagcgttc aaggtgggag atctggtgtg gcgccgtaca ttcgttctct cctcaaaagt      5280
     ggatcagatt accagtaagc tagagccgaa attcgttccg gccatcgtga aggacatcct      5340
     cgggacgaac ctgtatctgt tggaagatgt tctgagcggc aaaaaaggaa gattccacgc      5400
     gaaggacatc aaagcagact aagcgtaaag gttcaagcta tgcgaacagg cggtgcctgt      5460
     cgactataaa gcaaacgctg tcaaaaacac caatgggaac aactacagcg aaccaggggg      5520
     cagataagca tcatcmaact ccatctgcat ctctgtgata mcaatcaaaa actacatcat      5580
     ccgggatttt catccgcaag atggagattc cgacgtgtaa agctatgtac gcaggcagtg      5640
     cctgtcaacc aagaagcgaa agctgacaaa aacaccaaat gggagcagtg acaacgagca      5700
     gaggcgagca cagtatccac aattctgctt cgcctcagct ataccgatta ggagatttct      5760
     gtaaggattt ccgttcaaac gaacgaggtt ccgaagcgtt cgagctatgt acacaggcgg      5820
     tgcctgttaa ccagwatcag tagcwgtcga aaacaccaat cactgggaga tttgaccacg      5880
     watgctgaga gtgagawmcc gctacaacaa cgctccastt cagcaacmcc aagcaagact      5940
     gcaaggctat agcaaggatt tccgttcatc cgagcgaggt tccacaacga taaagctatg      6000
     tccacaggca aagcctgtca acmattagta ccatactcca aaaacacgta ccaagcggga      6060
     aaatggcaaa agccaggtgw gatgagcaam aacttcttaa cgactacctc tccaccatsg      6120
     acgwttcatc agsttcgttg tagmccacga tccwcgccaa aacttgaaca cgatttgcgw      6180
     ccacatcagg cagggaggag awccaamatg cggtacmcaa acacttccat cgcgccagga      6240
     ggtgtaccgt gcgccgttcg cgaagcggga gaaatcgcac cctacgtcac tggaaacggg      6300
     gagtagggat ctcggmaatg caccagatgt attctctgat aggaggagtg gagacccgga      6360
     gatcgacgac caaaaatcgg ttcgacgcgg agttgaagct tacggccact atcgggcgca      6420
     gtgagacagc agctggaggg cattgmgagg aggaggacgk ggctagagcc tacggaaggc      6480
     acgggagatt ggaaccccga aaacagccgt gagtaaggag tctccaaata ccacttcgaa      6540
     gaagcacaaa cgcaagtagc ctacggaagg cacgggagat tggaaccctg aaaaccatag      6600
     tgagtaggga ggctccaaat accatcacsa agaagcggam aagcaagcag cctacggaag      6660
     gcacgggaga ttggaaccct gaaaacagcc gtgagtaggg aggctccaaa taccacttcg      6720
     aagaaacgca atcgcaagca gcctacggaa ggcacgggag attggaaccc tgaaaaccat      6780
     agtgagtagg gaggctccaa ataccatcat caagaagcgg acaagcaagc agcctacaga      6840
     aggcacggga gattggaacc ctgaaaaccg ccgtgagtaa ggaggctcca aataccactt      6900
     caaagaagcg caaacgcaag tagcctacgg aaggcacggg agattggaac cctgaaaacc      6960
     atwgtgagta gggaggctcc aaataccatc agawagagcg gaagaagtac gtagcctacg      7020
     tcgggcatgs gagactgcga ccccgaagtc cacaataggg agactccaga waccagagct      7080
     agwcaacgag cgaagcgcac cgtagmccgc gatgagaaca gggagaaaac gcaagaatct      7140
     tcatcaagct atgtccgcag cgagctgcca accaagtaga ggaaacccsa cactmaagca      7200
     cacmaagtgg tcatgccgtt tgccgawcga gacaaatcga gcccaccatc aagaktcgac      7260
     cacccactac acagagctat gagwggcact actacaaaga caamaaaaca cgatctcggt      7320
     aatccaagca catccaagam tkgatgagtg cacacaaacs ctcaagtgtt tccagtcaat      7380
     tcaaatgcgt ggccwagggt taagaatctg ggggtcgtca tgaaatcttc atcccaaggt      7440
     aacgcgacca ggggcgcggt aaaactccat tctcgggctc atgacgattt agtcgcggaa      7500
     atgcttcttt tctcagtttt tatgcacaaa ccaatacaaa ccaacttagt ccttgtaaaa      7560
     agtctgtaaa tatagcttct atgtttagtg tgcgattaag cctattttag tcaatataat      7620
     aggctagaat ccgatttgaa tgttttgccg tagttwgctc ggatttgcgg aagctggaca      7680
     aggacgttgg tcagagacga tttgagaggt cgaagattct gccaggcgtg gctggcatga      7740
     tattgagttt aggattaaga tcaggctgtt cggaagaatg tggagatttg atttggcaag      7800
     caacccaggc ttgcgtatag gagtttagtt atgctgcata aggtcttgga acctgagata      7860
     acttgaggtc tgctcaagag tttagttgac cgacttgtct ctgaccatca tcctaggagg      7920
     atgattgaag attttgtgaa tttttcataa atcgtttgat catcgattta tgaaaaattc      7980
     ttccgctacg gtagagttg                                                   7999
//
ID   Gypsy-515B_AA-LTR repbase;    DNA;    INV; 1588 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-515B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1588
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1588
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3184-3184 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1588 BP; 458 A; 377 C; 412 G; 341 T; 0 other;
     tgttacgttt agatttgttt ggccataatg ataaagttct actcatgcac atagctcaat        60
     taaatgtaag tgaagaaata aaaataatat cgaaagaaca tacaatatgc acatccctat       120
     caactgcgac gaaacgaaaa ggcgttaagc aacagctaca ccgcactgac gtcaaaacgt       180
     catactggca actgttgtca cttgcaaacg aacggaagaa aagagaaacg gcacatcagc       240
     cacaggattg ctcataaagt gaacagaagt gacactgcgt ggatgccgaa tttggcctga       300
     gtcccactgg agtgcaacat tgcggtagct ggtgagggcg aaaattccta cgggaattag       360
     tccgatcggt tcaggaaaaa acggctttcg tgcgatttcc aactgcccgg cggatagata       420
     ggcattcttc aaggtaagaa gtgcatttat ctactttgag tgcccgattc ctaacctaca       480
     cgttgacgat ccagattgcg gggaaagttc actggccgcc gaagcaactc cgatacgcaa       540
     cccgatacga ttccacctgg aggacaagga caggtccgga aggagcgctc ttccctggac       600
     aggatagttg cggcaggtct aagaaggtaa cagcgcattg cagtccgata cagccataac       660
     ctaacctcac catcgtacca caggtccacg cacgtgcact tttgagagag gataaacacg       720
     attctacgtg tggatgaacg attccgtttg gaaaccggat tggggaacca acaccgactc       780
     acgaaggtaa taatccatcg atgggagcct aactgtagcc taatttgcca tgttaccgca       840
     ggtttacaac cacgtacgac cgctagacag ggagaagaaa gcccctacgg atttcacggt       900
     tggaggtaca tttcggaacc aaaatcccac aggattccgc atcacacgta cgaaaagagc       960
     cccattaccg ggtgagttgg aagacgaggc tttggcgatg gcagtggcta attggcgttg      1020
     cccttagggc tctttctttt ggttcttctt ccctaatcag gattcacctc atccgggaga      1080
     tcgtattcgg caggattgcg aacaagggtc gtccaagacg gtacgtgact ggctcagtgt      1140
     acgggcccac ttccaagcga tcgggtgcgg caagcggaac aacggtggca tcggccgcac      1200
     cccgggttcg cgaaggcgga cagttcttgt tcgagtgcga gcaacctaag ccaaccggag      1260
     gttcgaagat ttgggtcagc atgaagagca gcacagcagg acagcgcaaa ggcgtaggct      1320
     gcgagtaacc cggggccccg caccgcgaag aagagatgtg catgtatgtg agtagacgct      1380
     aagcatagaa atagataggg aaagaatgat aggagttagc gagcaccaaa tgtgctatag      1440
     atattacggc cgctccctgt aagcaagtgt aagaaaatat gatcagataa cacaacttca      1500
     ttggtatttg ttcagttttg ggaaattcat tcagctagtc ggagctgtgt cgggcttctt      1560
     tccaccccca acacactcaa ttgcaaca                                         1588
//
ID   Gypsy-515C_AA-I repbase;    DNA;    INV; 7618 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-515C_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7618
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7618
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3183-3183 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 7618 BP; 2279 A; 1815 C; 1989 G; 1535 T; 0 other;
     ttggcgccca actgaaaatc cacaatacat tagctaccgt tagcaatttt tttggtttgt        60
     gattcagaca tttggttttg tgcgtttgat tattcggcct ataataatca acaaaaaatt       120
     ttaaccctta cgcatagaaa taagaaatgg attacacaca tttgacggac gaagaggtca       180
     cgtatgagtt ggccctacgt catgtagtaa atttaggacc taccacccat agaggcaagg       240
     tcttacgtct caaggcactc atgcaagagg agtccttgcg agacaaccag cccactagct       300
     catgccatgt aatgagttca cagtcaaaca ttgagcactg tgaaactcaa atacagcagt       360
     tgcacatcag cactgaagcg gcaattcgca ctaacgatag tgcagcttta aacaaaattc       420
     gaacacgtct caatcattat cgcgaccgtt tgcaattaat ccgccctccg gtcgagctgc       480
     aggaaacaca cgcaatgtta tccatgcatg ttaacgtgtt gttaaacaaa gtgaacggaa       540
     caagtgtagt gaatggtgca caaatggggg aaagtgaagt cagagataca acatcaactg       600
     gcgctgtgag gaggaggagc aacaacgaat cggaaggagc tgttggagga gtagtagatg       660
     ccacaatccc tgtgggcagc aactccattc aagaaaccac accaccgcca gctgtgcagc       720
     cacctctgat gccatcgttt tcgggtggac acggaagagg gctgttgttc tctagctcgt       780
     tccaagcagg cgaccacgaa gactgccgac aaacggaaac gagacggcga agaagttcac       840
     cacctcctcc ctacctttct cgggagtatg caggatggaa tcaacaggca agagaaaccc       900
     catcgcaaga agcgctggaa gtgagaatca ggcagatgca ggagagagaa gagcggatgc       960
     gagaagaatg tttcaggatg cgagaagaac tggagcggct gatccggcga gaacgaccag      1020
     caccagagcg agcagatgag agaagaatgc agaaagcagt gcataactgg ccgttcaagt      1080
     tccggggcga gaaagacacc acttcactca acgttttcct agatcgggtg gagacgtttg      1140
     cgaggtcgga aggcatgagt gatgctacac ttcttagctc catcaagcac ctgctgcaag      1200
     aggatgccat tgattggtac gcacgagcaa cttctcagca actactgcgt acctgggacg      1260
     acttcaagaa agagattcga agagagttct tgcctagcgg ctactcgcaa attctgcgat      1320
     tggaggccag cttcagattt caaggaagag aggaatcgtt tgcgaaatac tatcgcgaca      1380
     tttctgcgct ctttcgcttt gtggatccac cgattccagc ggatgagaag ttcttcctgg      1440
     tgaagaagaa tatgaacgag aactatgcgg ccatcgtaac agcagcaagg ccacgctcat      1500
     tggaagaaat ggtcgaggtg tgcactggat acgacgagac gagaatgctt ctgaacagac      1560
     agcgcaggat tccgattccg cacagtgcgt tgctggaacc gaacttcgct acgcctgtga      1620
     cgtccaacag agtggttgca atgcagcagc agcctcaacg ctttaacaga gtccatgcgg      1680
     tggaagttca agatatcgct catgattacg agacagttga cgatcaagac gaagaacatt      1740
     ggcagcacac catcgacgag ttggcggagc aagtcaatgc gttgaaaatg aacctagagc      1800
     ggcgaactac gcgaccaggt tttacaccaa gaaacggaaa gcagcctagg tttacagaca      1860
     ggttcaaacc aatcgaagcg gacagcccgc aagtaatgcg acaacagatg agagacacgc      1920
     aatttcccgt acaacagcaa aggtcacaag ccgttccgca tcagccacgc cagccagagc      1980
     agcagcaaga gcagccgcaa agggtgcaga gttggcaaac gcgacaatgg aggccaagtt      2040
     cgctggaaga gtcgcaaaac tacaaccagc gaagcaactc tcttcagcaa gagccaacaa      2100
     gactggtaga acgccaatca gaagaacagc aggaagcaga gacccagcaa cgaatggtga      2160
     tggtatgctg gaactgcgac gaagaaggcc ataggtttat ggattgtccg aagccgcaag      2220
     cgatcctttt ctgctaccgg tgtggacgaa aaggctactc gttgcgcagc tgcttcacgt      2280
     gccgctcagg tgcggtaaac tacccagcgg agaaccagca atagagggga gcagctctcc      2340
     gctcagtatc ggaaacccct ccgacattcc agaatttcga aacctaaact cgttaatcat      2400
     caatcccgga agcgacaatc gaccacacgc cgtcatatct gtgctgggaa aggagttaac      2460
     cgctttgcta gacagtggag cgaactgctc tctgctagga ggaaataaag tcagtctggc      2520
     agaggaatac ggactacaga gaggaaccgt ctgtggcgga ataaagacgg cggatggcac      2580
     gaaacacaaa atacacaatt tcgtttatct tcccatcgtg tacaataacc ggaacgaagt      2640
     ccttccagta ctattagtac cttcgatccc ggactgcgtc atcctaggga tgaatttctg      2700
     ggacaagttt ggagtaaagg ctgtgtgctg cacagttgaa gcaaaacagg acgaagaact      2760
     cgtcgaggat catgagatga agcaactgac gtccgaacag aagaagcgac tggaacaagc      2820
     gatccggaag ttcccaaaag cggcagaggg caagctaggc cgtacgaagc tgtacgagca      2880
     tcgcatcgat gtgggtaacg caccacctcg caagcaacgg cattacccaa tgtcaccgta      2940
     tgtgctgcag gaggtgaaca aggagatcga ccggatgatt gccctcgatg tcatcgaaga      3000
     ggcacagttc tctccatgga acaatccatt ggttgcagtc aagaagaaga ccggacagta      3060
     tcgcgtctgc ttggatgctc gtcacctcaa ctccatcatg gtgaacgagg gatatccaat      3120
     cccgcagata gcagcgatca caaacaatct tcgaagcagc aaatacatct cgtcgatcga      3180
     tctcaaagac gctttctggc agttgccact tcatcaggct tcaagaacat tgacagcgtt      3240
     cacagttcca tccagaggcc acttccagtt caaagtggtg ccttttggac tgtgcacagc      3300
     gagccaagcc ctagcgagac tcatgactca tctgttcgcc gatttggaac cgttggtatt      3360
     ccattacctg gacgacatca ttatctgttc ggaaaccttc gaagagcaca tcgctttgtt      3420
     ggaagaagtg gcacgccggc tgcgacaagc aaatctcacg atatcgtcgg agaagtccaa      3480
     gttctgccga aagagcatga agtatctggg ctacgtgatc gacgaacaag gctggcgagt      3540
     ggatgaagaa aaaatccaag ccatagtcct gtttccaact cctaccacaa ggaaagaagt      3600
     gcaacgattc ctgggagttt gcaactggta tcgccgattc atcgccggat tttcacagct      3660
     agcatcaccg ttaacaagtc tgacgtctgg gaagaccaag ttccgttgga atcccatcgc      3720
     tgaagaagct ttcctcaaac taaaagccgc tctggtctcg gcaccggtgc tagcgatgcc      3780
     ggactacagc agaccgttcg ctatagcatg cgatgccagc gacacagcga tcggagcagt      3840
     gctaacgcag gacatcaacg gtgaagaaca tccgatcagc tacttctcgc agaagctgtc      3900
     agcgtccgag agaaagtatt cggtcacgga gcgagagtgt ctcgcggtga tccgagcgat      3960
     cgagaagttt agaggatatg tggaaggaat caggttcacc gtcttttgcg accatgcggc      4020
     gctcagctac ctaaaatcga tgaagaatcc aacggcgttg atgagtcgat ggctgttgcg      4080
     gttgaacgcg ttcgacttcg agatacggta caggaaggga tcgatcaacg tagttccgga      4140
     tgcactctca cgaacggtag ccgaagcagt attcgtggta gaccaggtgc aggatctgtg      4200
     gtacaggaag ctggttgaga aagtgaagag agaaggcgat cagtttccgg acttccgcgt      4260
     tgcaaataac acattgtaca agaactgtcg atgcaaggac gcagttggag cagtattcca      4320
     caagtggaag caagtcgttc cgagggaaga gaggttgcag ctgatccgta gataccacga      4380
     cgaaccttca gcagcgcacc ttggtttcta caagacttgg cacaaaattc aagcccacta      4440
     ctactggcca caaatgcagc aggagattgg cgattacgtg aggagctgtg tgacctgcaa      4500
     ggcatgcaaa gcgccaggaa ggaagatgat gccgcagatg ggaaacccca aaccagcaaa      4560
     gaccccttgg gagatgatat cggtggactt tgtcggtcca ctcacacgtt ccaagcgagg      4620
     aaacacagtg ctattggtag tagtagactg ggtcagcaag tacgtgatcg tcaagcccat      4680
     gcgcgcagcg gattcccaga agatggtgga gtttctggaa gaagaagttt gcctgaagtt      4740
     ctctcgtcca aggctgatat tgtccgataa cgggaaacaa ttcgaatcga tggtgttcaa      4800
     atcatggcta gcaaagcaca ggattggtca catgaaaaca gcgttctact gtccgcaggt      4860
     caacaacgcc gagcgcgtga accgcgtcgt agttacctgc atccgagcat tactagatgg      4920
     cgatcatcgt gagtgggatg aaaagctacc ggcaatcaca gcagcgatta acggagcgag      4980
     gcacgaagca acgggagtga gtcctcacga agcaaacttc ggacgaaacc tgctgttgca      5040
     cacggacctc tacacgcagc aagaactaaa cacaccagac gacccgaaag tggcacaaga      5100
     tctgaggctg tcagcaattc gccgaattca gaaggtcatc atcgagcgga tcaagaacag      5160
     tcaccagcgg gcgaagcagc gttataatct tcgcacaaga tcagtcgcgt tcaaggtagg      5220
     agatctcgtg tggcgccgaa cattcgttct ctcctcaaaa gtggatcaga tcaccagcaa      5280
     actagagccg aaattcgttc cggccatcgt gaaggaagtc ctcgggacga acctttatct      5340
     gttagaggat gttctgagcg gcaagaaggg aagatttcac gcaaaggaca tcaaagcgga      5400
     ctaagcgtaa atgggcaagc tatgcgaaca ggcgatgcct gtcgactata aagcaaacgc      5460
     tgtcaaaaac accactgggc ataataacag cgaaccaacg gagaagcatc caacgagctc      5520
     agctgcttct ctgttgaacc gatcaaggac tacatcattc gggattttca tccgcaagat      5580
     ggagattccg aaccgttcaa gctatgtaca caggcggtgc ctgttaacca gaatcagtag      5640
     cagtcaaaaa caccaatctt cgggagattt gaccacgaat gctgagtgtg agagcccgct      5700
     acaacaacgc tccacttcag caacaccgaa ttagactatg gcaaggattt ccgttcatcc      5760
     gaacgaggtt ccacaacgat aaagctatgt ccacaggcaa agcctgtcaa ctattagtac      5820
     catactccaa aaacacgtac caagcgggaa aatggcaaaa gtcaggtgtg atgagcaaca      5880
     acttcttaat gactacctct ccacctcgac gattcatcag gttcattata gaccacgatc      5940
     cacgccaaaa aaaaaaaaac cttgaacacg atttgcgacc acatcaagct gggaggagat      6000
     ccaacatgcg gtacccaaac acttccatcg cgccaggagg tgtaccgtgc gccgttcgcg      6060
     aagcgggaga aatcgcaccc tacgtcactg gaaacgggga gtagggatct cggaaatgca      6120
     ccagatgtat tctctgatag gaggagtgga gacctggaga tcgacgacca aaaatcggtt      6180
     cgacgcggag ttgaagctta cggccactat cgggcgcagt gagacagcaa ctggagggca      6240
     ttgagaggag gaggacgtgg ctgaagccta cgaagggcac gggagattgg aaccccgaaa      6300
     accatcgtga gtagggagac tccaaatacc atcacgaaga agcagaaaag caagcagcct      6360
     acggaaggca cgggagattg gaaccctggg aggccgtgag tagggaggct ccaaatacca      6420
     tcacgaagaa gcagaaaagc aagcagccta cggaaggcac gggagattgg aacccgaaaa      6480
     cagccgtgag tagggaggct ccaaatacca cttcgaagaa acgcaatcgc aagcagccta      6540
     cggaaggtac gggagattgg aaccctgaaa accattgtga gtagggtggc tccaaatacc      6600
     atcatgatga agcggacaaa caagcagcct acggaaggca cgggagattg gaaccctgaa      6660
     aactattgtg agtagggagg ctccaaatac catcagatag agcagaagaa gtacgtagcc      6720
     tacgtcaggc atgggagact gtgaccccga aatccacaat agggagactc cagataccag      6780
     aactagacaa cgagcaaagc gcatcgtaga ccatgtccgc agcgagctgc caaccaagtg      6840
     gtcatgccgt ttgtcgaacg agataaatcg agcccaccat caagattcga ccacccacta      6900
     cacagagcta tgagaggcac tactacaaag acacaaaata cgatctcggt aatccaagta      6960
     catccaagac tggatgagtg cacacaaacc ctcaagtgta tccagtcaat tcaaatgcgt      7020
     ggccaagggt taaagatctg ggggtcgtca tgaaatcttc atcccaaggt aacgcgacca      7080
     ggggcgcggt aaaaccccat tctcgggctc atgacgattt agtcgcggaa atgcttcttt      7140
     tctcagtttt atgcacaaac caaaacaaac caatttagtc cttgtaaaaa gtttgtaaat      7200
     atagcttcta tgtttagtgt gcgattaagc ctattttagc caataaaata ggctagaatc      7260
     cgatttgaaa gttttgccgt agtttgctcg gatttgagga agctggacaa ggactttggt      7320
     cagagacgat ttgagaggtc tatgattctg ccaggcgcag ctggcgtgat attgagtcta      7380
     gtattaagat tatgcagttt aagcgatttg atttggcaag caaccaaggc ttgcgtatat      7440
     gagtttagtt tacggtgtaa ggttaaagaa ccagatgtaa cttgaggtct gctcaagcgt      7500
     ttagttgacc gacttgtctc tgaccatcat cctaggagga tgattgaaga ttttgtgaat      7560
     ttttcataaa tcgctttctc atcgatttat gaaaaattct tccgctacgg tagagttg        7618
//
ID   Gypsy-515C_AA-LTR repbase;    DNA;    INV; 1657 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-515C_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1657
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1657
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3185-3185 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1657 BP; 470 A; 406 C; 427 G; 354 T; 0 other;
     tgttacgttt aagtctgagt tgtgtaagat atgcaaatta aagtcagtca gcacgtaaat        60
     attgtaagcc tttaacattc agaataaaat aaactgctcc gcaaaccgca aattgagaac       120
     ccctgcacac gtttgtattc catccgtcaa ccgagaagaa cgaccgatcg gtgacgctca       180
     cagaatttgg tatatctgca caccatgaaa ccaccttctg catagcatcg agaacgtgca       240
     ccaggaaata acaaccacat aagactgcca ctaccacaac gtcaagctag agcagagaga       300
     ccgctctctg cgctctttta cgcacacagt cgtcacacac gccacgacgg gggagacgat       360
     tgagaattat tcgcagccag ctcactcagt tagtgtcagc ccgccgaaac gacagtgcac       420
     gcaaatcgaa agagtccggt cttcgttgaa acgaaaaact tagccgtcca tcttgtgaag       480
     tttggtagga taaccgcgtg tggttcctcg agtgaaatta gtgccaggca ggaggcccac       540
     catttgattc cagccaaggg taagacaacc ctaattccat ttggctcaaa acgctgattt       600
     ctggattcat tcgaacagga aatagagcgc acagagggac acacggacca ccattttgca       660
     tttcggtttg cagaaaccac gttgcccagg gtaaaaaagc aaaaaaccca tacgatcagc       720
     cctcgaagtc gagaaacagc gcgacggtcg gaaccggtgc gtgggaaccc aaccagttgg       780
     tgcatcggta aggcctttta ccacccgttt tggataagca agtttaaacg ccgtttctgt       840
     ttaattgcgc agtttccacc acgccggact actgtaaccc tgattgcacc attcccgaag       900
     gtcaaccgat agtcatacat ccccgggaca aagaaagcct tccataggaa gtaagccaaa       960
     gcccaaaagt taggcccacc accagaagct aatcggcctc gtgcgttagg gctttctttt      1020
     ttcgtttatt gcagtcagtt cgaggggtca ttgggagcag ccagacgagc caggcggtgg      1080
     cagcgagtca gtgtggtctt caacccccct caatccggtt caagtcaacc gcggatctaa      1140
     tctcgccaac attggggaag gcacccggcg gcgtgcgtca tatgatcacc gattagacgg      1200
     attcggagcg attggcggtt ctcggctggt gcaggaagga agcgattatc cggagggacg      1260
     aaactatccg ctaggcagag cagcgtcaga gaactgcacg cggtctcgtg ggtgtcgtca      1320
     gttcagcagc aagatcaagt cggtgtgagc atcggccaga aaggcggaat gatgtggctg      1380
     cagagcgtca acggggtagc ggcggtaagc agggcgcgcc cgaaagtgca gtgagtagag      1440
     caaatctagt ttttaagcaa agtaaaggtt aaaggagagg ctaggagtca gaagatagga      1500
     ggaaaggatc aggaaaagga aaatgatggt cagtaaataa aaaacttgta accatgatca      1560
     gttttgtgtt ggaattcagt tatttgtgcg cattccctta agagctttcc ggggctgatc      1620
     gaggtttcca ttcccccctc gacagacact cgcaaca                               1657
//
ID   Gypsy-515_AA-I repbase;    DNA;    INV; 7675 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-515_;
KW   Gypsy-515_AA-I; Gypsy-515_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7675
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7675
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3112-3112 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >97% similar to the consensus.
XX
SQ   Sequence 7675 BP; 2185 A; 1886 C; 2069 G; 1479 T; 56 other;
     ctggcgccca actgaaaatc cacaaatttg aaactaccgt awgcgatttg ttggtttgga        60
     ctttagaatt tttggttttg tgcatttcgg ttatccggtc tttggtaacc aatcaaaatt       120
     ttaaccctta cgcattagat acgatagtat aatggattac acacacttga ctgatgagga       180
     ggtgacgtat gagttggctc tgcgtcacgt agtcaaccta ggacccacca cccacagagg       240
     gaaggtcctg cgcctcaagg cactcattca tgaggaagcc tcgagaaata accagcccac       300
     tagctcagac catgtaatga gctcgcattc aaacatagag cactgcgaag ctcaaattca       360
     ccagttgaaa attagcacgg actcggcaat tcgcacagcc gatagtgcaa cactcaatca       420
     gattcgttcg cgtctcaccc actatcgcga tagattgcgt ttaatccgtc cttcggtcga       480
     actgcgcgac actcacggca tgctaaccat gcacgtggac gtgttactga acagagtgaa       540
     tgggacaagt gtagtgaata gtgtacagag aggtgaagat ccagtgaacc aacccaccgg       600
     cgcagtaagg aggaggaaca gtgaggtgga aggagctgta ggaggaacag tggakgccac       660
     cattccagta ggtagcaacg agaatcgaca ttccacacca ccagctggaa cgttaccgcc       720
     tctgacgtcg ttctcgggtg gacaaggaac aggtttgctg ttttccggtt ctttcgaagc       780
     aggcggcagc ggagtcggaa gacaggcaaa ctcaagtcgg caatacgtta caccaccgcc       840
     tccttacctt cctcgggagc atgaaggatg gaatcatgca gcgggagaag cacaaactgt       900
     tcaagtgttg gaagcgagga taagagagat gcaggagagg gaagaacgga tccgccagga       960
     gtattacagg atgcgaggag acttggagcg attaatccgc caagaacggc taccaccgga      1020
     gagagcggac gaaaggcgaa tgcagaaggc agtacacaac tggccgttca agttccgcgg      1080
     cgagaaggac accacttccc tcaacgtctt cctggacagg gtggagactt tcgccagatc      1140
     ggaaggtatg agcgatgcaa cactgctcag ctccatcaaa catctgctgc aggaggatgc      1200
     catcgattgg tatgcgcgtg ctacgtcgca caacctgctg cgcacttggg aggagttcaa      1260
     gcaagagatc cggagagagt ttctaccaag cggctattcc cagattctac gccaagaagc      1320
     cagcttccga ttccaaggga gagaggagtc gtttgcgaaa tactatcgcg acatttcggc      1380
     gctctttcgc tttgtggatc cgccgattcc ggccgatgag aagttctttc tggtaaagaa      1440
     gaacatgaat gagaactatg cggcgatagt gacagcagca aggcctcgtt cgttggagga      1500
     gatggtcgag gtttgcaccg gatacgacga aacaagaatg ctcctgagca ggcagcgccg      1560
     gattccgatt ccacacagtg cgctactgga accaaacttc gctacacccg tgtcgaccaa      1620
     caggccggtt ctgatgcagc agcaacagcc tcatcgtttc ggcagagtgc aagcggtgga      1680
     aatgcaagga agcgttccgg atcaagaaat ggtagaggat caagcggaag acaactggca      1740
     gcacaccatc gacgagctgg tggagcaagt caacgcgttg aagatgagca tggagcggag      1800
     aactacgcgg cctgatttca cgtcaaggaa tgaagggcag tctagattcc cgaatagggt      1860
     tggccgaact gagggggata ctgcgcaagc agggcggcag cagataagag acgcacgctc      1920
     acccacacaa caacaaagac cgctgcaagt cgcttcgtat cagccacgac aaacagagca      1980
     gcagcaagat cagtcgcgga tggttcagaa ttggccagca cgacagcgga tatccggctc      2040
     ggtagaagag gcgcacaaca tcaaccggtc aggcagctat cttcaacaag agccgatgag      2100
     aatcgtcgat cgtcgatttg aagagcagca agaagcagca acccgtcagc aactggcctt      2160
     ggtttgctgg aattgcgacg aggaaggcca tagattcacg gactgtccaa aaccgcaagc      2220
     gatcctgttc tgctaccggt gtggacgcaa aggctactcg ttacgcagtt gtttcacttg      2280
     ccgcacagcc gcgggaaact acccagcgga gaaccagcag tagaggggag cagctctccg      2340
     caaattctag gaaacccctt agacctccca gaatttaaaa acctaaactc gataatcatc      2400
     aaccccggaa gtgacaaccg gccgcatgcc gtcatatctg tgatggggaa ggagatgacc      2460
     gctttgctag acagcggcgc gaactgctct ctgctgggag gaactagagt cggactagca      2520
     gaggagtgtg gtttacagaa aggaaccgtc tgtggcggga taaaaacggc tgacggcact      2580
     aaacacaaga tcaacaactt tgtctatctc cccatcgtct acaacaacag aaacgaagtc      2640
     cttccagtac tgttagtacc ttcgatcccg gactgcatca tccttggaat gaatttctgg      2700
     gacaagtttg gagtgaaggc tgtgtgctgc actatggaag caaagcagga cgaagaagtc      2760
     gtcgaggacc atgagatgaa gcaactgacg tccgaacagc agaagcaact agaacaagck      2820
     atccggaagt tcccaaaagc ggtagagggc aagctaggcc gtacaaagct gtatgagcat      2880
     cgcatcgatg tgggtaacgc cccacctcgc aagcaacggc attacccaat gtcaccgtat      2940
     gttctgcagg aggtgaacaa ggagatcgac cggatgatcg ccctcgacgt catcgaggag      3000
     gcacagttct ctccatggaa caacccattg gttgctgtca agaagaaaac cggtcagtat      3060
     cgcgtctgct tggatgctcg tcacctcaac tccatcatgg tgaacgaggg atatcctatc      3120
     ccgcagatag cagcgatcac aaacaatctt cgaagcagcm aatacatctc gtcgatcgat      3180
     ctcaaggacg ctttctggca gttgccactt catcagacct caagaccatt gacagcgttc      3240
     acagttccat ccagaggcca cttccagttc aaagtggtgc cttttggact gtgtacagcg      3300
     agccaagccc tagcgagact catgactcat ttgttcgccg atttggagcc gttggtattc      3360
     cattacctgg acgacatcat catctgctcg gaaaccttcg aggagcatat cgctctgctg      3420
     gaagaagtgg cccgccgact gcgacaggcg aatctcacca tatcgtcgga gaaatccaag      3480
     ttctgcmgaa agagcatgaa gtatctcggc tacgtggtcg acgaacaagg ctggcgagtg      3540
     gatgaagaga agatccaagc aatagtacag tttccgactc caacaacacg aaaagaagtt      3600
     cagcgattcc tkggcgtttg caactggtac cgccgmttca tcgccggatt ttcacagcta      3660
     gcggcaccgt tgacaaacct gacgtctggc aagascaagt tccgttggaa tcccattgct      3720
     gaagaagctt tcctcaagct aaaagccgct ctggtctcgg caccggtgct agcgatgccg      3780
     gactacagca gaccgttcgc aatagcgkgc gacgccagcg acacagcgat cggagcagta      3840
     ctaacgcagg acaatgamgg cgawgaacat ccgatcagct acttttcgca gaagctgtca      3900
     gcgtccgaga ggaagtattc ggtcacggag cgagagtgtc tcgcggtgat ccgagcgatc      3960
     gagaagttca gagggtatgt ggaaggaata aggttcatcg tctattgcga ccatgcggcg      4020
     ctcagctacc taaaatctat gaagaatccg acggcgttga tgagccgatg gctmttgcgg      4080
     ctgaacgcgt tcgacttcga gatccggtac aggaaaggat cgatcaacgt cgtwccggac      4140
     gcactctcac gaacggtagc cgaagcagtg ttcgtggtag accaggtgca ggatccgtgg      4200
     tacagaaagc tggttgagaa agtgaagagc gacggcgacc agtttccgga cttccgcatg      4260
     gcgaacgaca ccctgtacaa gaactgtcgc tgcaaggacg aagtcggagc agtataccac      4320
     aagtggaagc aagtcgttcc gagagaagag aggttgcagc tgatccgtmg ataccacgat      4380
     gaacckgcag cagckcacct tggcttctac aagacstggc acaaaattca agcccactac      4440
     tactggccac aaatgcagca ggagattggc gattacgtga ggagctgtgt gacctgcaag      4500
     gcatgcaaag cgccaggaag gaagatgatg ccgcagatgg gaaaccccaa gccagcgaag      4560
     actccgtggg agatgatatc ggtggacttt gtcggtccgc tcacacgttc caagcgagga      4620
     aacacagtgc tgttggtggt agtagactgg gtcagcaagt atgtgatcgt caagcccatg      4680
     cgcacagcgg attcccagaa gatggtggag tttctggaag aagaagtttg tctgaagttc      4740
     tctcgtccwa ggctgatatt gtccgacaac gggaagcagt tcgaatcgat ggtgttcaaa      4800
     tcmtggctag cgaagcacag gattggccac atgaaaacag cgttctactg tccgcaggtc      4860
     aacaacgccg agcgcgtaaa ccgcgtcgta gtgacttgta tmcgagcatt gctagatggc      4920
     gaccatcgtg agtgggacga aaagttgccg gcaatcacag cagcgataaa cggagcgaag      4980
     cacgaagcaa cgggagtgag tcctcacgaa gcaaacttcg gacgaaacct gctgttgcac      5040
     acggacctct atacgcagca agaactcaac acaccagacg atccgaaggt agcacaagat      5100
     ctsaggctgt cggcaattcg ccgaatccag aagctcataa tcgagcgaat caagaacagc      5160
     caccagcggg cgaagcagcg gtacaatctt cgtacaagat cggtagcgtt caaagtwgga      5220
     gacctggtgt ggcgccgwac attcgttctc tcctcaaaag tggatcagat tamcagcaag      5280
     ctagagccga aatttgttcc ggccatcgtg aaggacatcc tcgggacgaa cctgtatctg      5340
     ttggaagatg ttctgagcgg caagaaagga agattccacg cgaaggacat caaagcggac      5400
     taagcgtaaa agtgtaaagc tatgcgmgca ggcagtgcct gtcgaccawg aagcgaamgc      5460
     tgwcaaaaac accaaatggg agcagtkaca gcgagcagag gcgagcasag tatccacaat      5520
     tcwgcttcgc ctcagctata ccgattagga gatgcaagga tttccgttca cccgaacgag      5580
     gttccgaaac gttcaagcta tgtacacagg cgttgcctgt taaccagaat cagtagctgt      5640
     cgaaaacacc aatcaccggg agatttaacc acgaagkctg agagtgagaa cccgctacaa      5700
     taacgctcca cttcagcaac accaakcaag actatggcaa ggatttccgt ccatccgagc      5760
     gaggttccac aacgataaag ctatgtccac aggcaaagcc tgtcaaccat tagtaccata      5820
     ctccaaaaac acgtaccaag cgggaaaatg gcataagtca ggtgtgatga gcaacaactt      5880
     cttaacgact acctctccac ctcgacgatt cakcagcttc gttgtagacc acgatsctcg      5940
     ccaaaaactt taacacgatt tgcgaccaca ccaagcaggg aagagtatca acatgcggta      6000
     cccwaacact tccatcgcgc caggaggtgt accgtgmgcc gttcgcgaag cgggagaaat      6060
     cgcaccctac gtcactggaa acggggagta gggawctcgg caatgcacca gatgtattct      6120
     ctgataggag gagtggagac ccggagatcg acgaccaaaa atcggttcga cgcggagttg      6180
     aagcttacgg ccactatcgg gcgcagtgag acagcagctg gagggcattg agagaaggag      6240
     gacgtaacta gagcctacga aggcacggga gattggaacc ctgaaaacca ccgtgagtag      6300
     ggaggctcca aataccatcg tgagaagcgs wcaagcaagc agcctacgga aggcacggga      6360
     gattggaacc ctgaaaacca ccgtgagtag ggaggctcca aataccatcg gagaagcggt      6420
     caagcaagca gcctacagaa ggcacgggag attgggaccc tgaaaaccat cgtgagtagg      6480
     gagactccaa ataccatcgt gagaagcggw caagcaagca gcctacggaa ggcacgggag      6540
     attggaaccc tgaaaacctt cgtgagtagg gwggctccaa agaccatcag gawgaagcgg      6600
     acaagcaagc agcctacgaa gggcacggga gattgggacc ctgaaaacca ttgtgagtaa      6660
     ggaggctcca aataccatca gatagagcgg aagaagcacg tagcctacgt caggcatggg      6720
     agactgtgac cccgaagccc acaataggga gactccagac accagaamka gacaacgagt      6780
     gaagcgcacc gtagaccgcg atcaaacgca agcawcatca tcaagctatg tccgcagcga      6840
     gctgccagcc aagtagagga aaccccacas caaaacacac caagtggtca tgccgttcgc      6900
     cgaacgagat aaatcgagcc caccatcaag attcgaccac ccactacaca gagctwtgag      6960
     cggcactact acaaagacac aaaacacgat ctcgktaawc caagcacatc caagactgga      7020
     tgagtgcaca caaaccctca agtgtttcca gtcaatccaa atgcgtggcc aagggttaaa      7080
     gatctggggg tcgtcatgaa atcttcatcc caaggtaacg cgaccagggg cgcggtaaaa      7140
     ccccattctc gggctcatga cgatttagtc gcggaaatgc ttcttttctc agttttatgc      7200
     acaaaccaaw acaaaccaac ttagtccttg taaaaaagtc tgtaaatata gcttctatgt      7260
     ttagtgtgcg attaagccta ttttagtcaa tataataggc tagaatccga ttagaatgtt      7320
     ttgccgtagt ttgctcggat ttgtggaagc tggacaagga ctttggtcag agacgatttg      7380
     agaggtcgwa gattctgcca ggcgcagctg gcgcgatatt gagtctagga ttaagatcat      7440
     gcagttcagg mgatagtgga gatttgattt ggcaagcaac caaggcttgc gtatatgagt      7500
     ttagttaggc tgtacgaggt tgaggaacct gwtgtaactt gaggtctgct caagggttta      7560
     gttgaccgac ttgtctctga ccatcatccc aggaggatga ttgaagattt tgtgaatttt      7620
     tcataaatcg ctwgttmatc gatttatgaa aaattcttcc gctacggtag agttg           7675
//
ID   Gypsy-515_AA-LTR repbase;    DNA;    INV; 1342 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-515_;
KW   Gypsy-515_AA-I; Gypsy-515_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1342
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1342
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3140-3140 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1342 BP; 391 A; 323 C; 314 G; 314 T; 0 other;
     tgttacgttt aagttagatt cgttactgta ttatagttag aattgatatt tgaaaaagaa        60
     aaattgtaag caaaaggtga aaatcaccaa cataagtaat ttttcgctcc gtgtaaattc       120
     gcccgcatcg gcctatccga atcacccctc gcacattgcc aacaatcgat cgaaaccgac       180
     aaccgccaca actgtcattc cttgcttgcg atcctatctc atctggcaca catacatgag       240
     caagtgttcg acgctcggag atgaaaatct tgccagagta tatgagtcag catttggctc       300
     attccgcact tgtccgccat cgtgaaaaaa cggcagtttg cattgtcggg attccgaaaa       360
     tcgcccaatc atcagcagaa cgcccacaat cggaacgctc acaatcggaa cgctaattgt       420
     accagtcaag gggatttcca tccggtggat gccattgagt caggctaacc aacctcaagc       480
     ggtgagtaca gccaagccca ggttaacgta accggaaatt aacctcacac tcatcattag       540
     gcaagcggcg tttgagaagt caaaacggaa tcgctgacga cgttcctcgg tgtcaaaaaa       600
     cataatcggc cgttgttcgc tgcgaatatt ggtgagtaag gatccacagt gcagcgaaga       660
     gcaagatcgt aatgctttga tctttaccag gtagactgtg acccaagcga acccctgaaa       720
     cgaagcgatc gaagacaata aggacgagag catcaagatc gtccatctcg ctcaaatcca       780
     ccctcgtgga gaaacaaaaa cccctttcac gggtaagatg tctgcaaacg ggtccgcaaa       840
     gcaaaatgct aatgctccgc acgacagggt ttttgttctt atttggaatt tcagctacca       900
     ctcagcaaac cgttggacga acaggagttc ccaagcgaca aggggccgat cgccgcagcc       960
     gagaccgagt tccgaaggca gattccgaac tgcgccgata ggatccggct agcctgatcg      1020
     cgacatggtc gcaccagcaa gcaagcaacc ggtgggctgg atagtggaga tgtcgagatt      1080
     cgatgtggcc aagatgtggt agttccggta ccgtgagtac ccctaagtta gaacttaaga      1140
     tcaaaaatta ccacctaaga aactaagatc gataggccta tcagaggata ggaaagctag      1200
     gacgaggaga aaatgttgag caatacagtt tgttaaaatg aatcttgcgt tttgtgattt      1260
     cgttggtgtc ttagcctttc agtgtctgct ttgtatttcg cttcggtagt actgctctac      1320
     tccttccggg aaacttgcaa ca                                               1342
//
ID   Gypsy-516_AA-I repbase;    DNA;    INV; 6075 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-516_;
KW   Gypsy-516_AA-I; Gypsy-516_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6075
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6075
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6075 BP; 1978 A; 1250 C; 1340 G; 1507 T; 0 other;
     ttggcgatcc tgccaggttt gccttaaagg caataaaaga ataccctgga ttttctgctc        60
     gctgagattt aatcgaatct aacaaatatg taaaaggggt cacccggatc aagaaaaaat       120
     ttcaaattct gaaattgcgg ttaggttccg tgaatggtgg acagcgaaaa aaaaaaaaaa       180
     aaatgatgaa gcgcaaatgt gattggaaaa aaaataaaat atgcgctagc ccgttggtag       240
     tcatatacct cttttttttt aatgattggc tatcaccaat tagtgaaaat aagactggtg       300
     gtcagaaatc tgtttgaaaa aaaaaaaaat cgtcatgacc ggtggtcaaa ttctcatcga       360
     tggaacgact ggcggtcaaa ttctagtttc agagtgactg ttggttaaat atacgtttta       420
     agtgcgactg gcggtcgaat atattattgg aaacgactgg tggtcgaata caagtttaag       480
     tgcgactggc ggtcgaatat gttattggaa acgactggtg gtcgaataca agttttagtg       540
     cgactggcgg tcgagtatat tcttggaaac gactggtggt caaatacaag ttttagtgcg       600
     actggcggtc gaatatatta ttggaaacga ctggtggtcg aatacaagtt ttattgcgac       660
     tggcggtcga aaatttgtct ccgtatgact ggtggtcaaa tgcacatcat tagcacgact       720
     ggcggtcgaa aactaactaa ctgaaagctg attgctaaaa aaaaaaaaaa aaaattatgt       780
     atgtattctt gatgtattct ttcaaatgtg tttattccag aacgtgaaag ttaccaactt       840
     gacacaacat ggcaagcaac ggcaaatacg ttcgtgctcc gaagtaccaa gactcgttag       900
     cgagcggcga tgagtacgaa ccttggtata accatggtga ttcggatctg gaggagaaca       960
     tctcgcttaa gagcgactgc gacatggata acgacaacat cggcgataga agttttactg      1020
     agctcggcaa ggcaagtgcg accccaggag atgagactca actggacgtg aatgaggaac      1080
     gaatgagaaa catggagaat attctatccg gtatcacgag aacactggat tccatgaaaa      1140
     cgatgcgccc aacaccggat accgatcata actggtcgac atatgtggaa ccaagtcatt      1200
     catccaacta caattcgaca agtgtacgct gggataacat cgacccattc ccgactggag      1260
     taccggccaa taagatgtgg gaggaatgga accggtacat agagaacttc gagatcgcag      1320
     cgactcttag taatgcgaat gacccggttc gaagatgtca actacttttc ctatcgatag      1380
     gaaacgagat gcagggtatc gtcagagcag cgaaactgag acccagtctc aacaatgcga      1440
     gctgttatag agactttgtt acaaacatca ctaaatattt ccaatcaatg acagactcgg      1500
     cggccgaaca cgaaaacttc tctaacatga gacaaggaaa atcggagacc gcaattgctt      1560
     ttcactctcg actcacggca aaagtccgat tgtgtgatta cagccctgcc gatcaggaac      1620
     gattcgtaag agcacagctg ctaaaaggtt tgcgaaataa ggagctggta aaagccgcca      1680
     gaacatatgg acatgacatc aattacatag tccaagcagc cacccgcaac gaagcatatg      1740
     aggccgagac ttcggttgca gatcaatcgg gttcgtaccg taccgagtca tttaccgtca      1800
     accgtgtgca acaacaacaa tccaacttcg actcaagaaa acgtaagcgt acagatgatt      1860
     gggatgatag aactcaagtg aagcgcccac gaaacacgca acacgcactc caacgattca      1920
     aaccaatttg gaagccgcgc gaccgatgcc gtagatgcaa caaccctcgt cacattgatc      1980
     gaccatgccc cgctctgcac aggaaatgcg atacttgtgg tcagattgga cattacgcag      2040
     caagttgtag aagatcaagg attcgacagc tccgagttga gagaagcccg tccccatcag      2100
     ggaatggtca catggaacaa gcgcaggtac tgaatgaatg aaaccatttg aatcacaata      2160
     aacgtttaaa acataaacca aacttgtttt acttacgtct taattcaatc ctattttagc      2220
     acgtgaacgc tttaactttc gaagatgtgt tggttgattg tacgatcgga tcatcaagtc      2280
     ccattcgact actaattgat tcgggagccg acgtgaatgt gattggtgga aaagattgga      2340
     atcgacttga acaacagtac cagtctggtt gtgcaaaact caagtttata ggaaatccac      2400
     ccattaaagg acttcgggca tatggtgcgt ccacttcaat gctcattgat tgtacttttg      2460
     aggccgatat aaaagcatta ggaaccggca gattatactc ggatgctgtg tttcatgtag      2520
     taagcaacgg cactagatca atccttggtc gcaacactgc tagtgatatg ggactgctac      2580
     atgttactac aaatattaat agtctcgata ttggtagcaa gaatggaatt ttcccgaaaa      2640
     tgccaggtat caaaatacga ttcagtgtag atggaacagt accacccgtc aaaaatgcat      2700
     attacaacgt cccagcagct tttcgagaag ctgcaaaaca acgactagaa gatatggaat      2760
     cacaaggtat tatcgaaaaa gtaaccacag ccccccattg gataagtgga atgtcggccg      2820
     tcgcaaaggg aaaggacgat ttccgattgg tagttaatat gcgggctccc aataaggcta      2880
     tcaatcgcga atactataga ctccctctga ttgacgaaat gaaggttaaa ctgcatggat      2940
     caaaatattt taccaaactc gacctaagta atgcattcta ccatctagaa ttacacactg      3000
     attctcggga ccttacaacc tttttgactg aaaatggtgc gtatgaaaac ttaagataat      3060
     tttttttagt tttaatttct atgatgtttg attacaggca tgtatcggtt tactaggttg      3120
     atgttcgggg tgaactgtgc ccccgaaata ttccaaagag aaatgtcacg catactcaaa      3180
     gatgttaaga acaaaatcgt ctacatcgac gatgttctcg tatttgcgga cagtctcgaa      3240
     gaattgagga aaactgtggc tgaagttctg aagatattaa gggcaaataa tcttactttg      3300
     aacaccgcaa agtgtgagtt tgataaaacc cgcctcaagt tcctcggcca cgatctcgat      3360
     gaaaatggct tccacgtcga cgacgcgaag ataaaaagca tccgtaactt ccgtgaacct      3420
     actactgtat ccgaactacg aagttttctt ggattggccg catatatcag tccacatgtg      3480
     gaaaattttg ctgagctcac cagcccgcta tgggagataa tcaaagccaa atcatggaca      3540
     tgggggccac aacaaagcca gtctttcaga ggaattcaag agcgaataat aaattgttgc      3600
     gtaacgctcg gattcttttg cgaaaacgac aggacaatcc tgtacactga tgcgtcacca      3660
     gtagcattgg gcgctgtctt ggtacaagtg gaccatcaag ggtcatcgag gataatcagc      3720
     tttgcgtcta aatctctcac accaaccgaa agaaaatatg cacaaaacca acgagaagca      3780
     cttggtgcag tatgggccgt cgaatatttc tcctatttcc ttctaggtag acgtttcacg      3840
     ctgcgtaccg atgcccaagg agtagctttc atccttaacc gatcacgcga ggattcgaaa      3900
     cgagccttaa cgcgagctga tggatgggcc ttgcgactaa gcccgtacaa ttacgctgtc      3960
     gaatacgttc gagggactga taatatcgct gatgctccat ctaggcttta caacggcata      4020
     gataaaccat tcgacgaaga atccagccca tgggaaatcg cgatgctaga ggcaaacgaa      4080
     gctaagttcg tcacgcacga agatatcaaa tcagcaacaa caaacgaccg aactctacag      4140
     gatgtcatga gcgcgctaga ctcaggaaac tggcccgttg aactacgaaa atatcaagca      4200
     atagaacaag atttgacgac acgagagggt atgttggtga aaatgggatg tgctgtaatt      4260
     ccagaagctt tgcggaaacg tatattggaa gtatctcatc aaggacaccc ttcggctgcg      4320
     aaacagaaaa gtatcctgag acaacgcgtt tggtggccag gtatgccaaa tgatgcccaa      4380
     aagtgggtag attcttgttt gacgtgcgca gttaacggca aaccagagaa gcctactcct      4440
     atgtaccgaa tatttgctcc aaaagcagta tgggagacaa ttgctttgga ttttaatggg      4500
     ccgtatgtaa aatttggtgg aatcagcatt cttgtcattg tcgactaccg ttcgagatac      4560
     ctgattgctc gatcggtcaa atcaacaggg ttcgaacaaa ccagaaaagt tctggaggat      4620
     gtcttcgagc gagagggaac cccaaagtat atcaaatcgg acaacggacc acccttcaat      4680
     ggagaagagt acaagcgata ctgtatggaa cgcggaatca ccccaatctt ttctactcct      4740
     ctatttccac agcagaacgg aatggtcgag agctacatga aggtgataaa taaggcgatg      4800
     acaagtgcat ctattgataa aaccaactat atcgaggaac tacgtaatgc aattcatgcc      4860
     cacaatgctg cagctcatag cgtgactaag ctgccccctg aggtcgtaat gtctggacga      4920
     aaaatcaaac gagcacttcc aatgctggat tttgaaaatg ttaaaatcaa cgacgagctg      4980
     ttgtcagaaa gggatcgtga ttcaaaacta gcgggaaaag ctcgagaaga taaacgacgt      5040
     ggtgctcgtc caagtaaggt aatgccaggg gatgaagtaa taatcgaacg ggcggttcga      5100
     ggaaaggggg aatctcgttt ctcaccctgc aagttcatcg tagttgagaa tgacaacggt      5160
     agccttacac ttagcgatcg aaatggtcat gtgttaaaac gccacatatc agacaaaaaa      5220
     agtatttccg tggcgaacag aagaacatcc gaaatctacc gaagaatcgt cccccaagct      5280
     tgatgtaaaa tcaccagtaa ctgttcgtaa taggaaagct ccagcatacc tgacagatta      5340
     tgtccaatct atcgaagaat actaggttca atccaaacgt tgtatatcac aaataaactg      5400
     taaaaatcaa gcgtaaccca ttgttgttct ttgacatcct acaaaaatta tcgtagaaaa      5460
     aaatccagct gcttgtgcgc attcatttcc ctcttacgat taactaaaaa tagaaggaag      5520
     caatgtcgtt agtataactg attttacctg tcttcgctaa tccaaaatat gcataaataa      5580
     accaacaaaa cttttaaaga ttgccgaaca gaatatccag gataacaaac tttccatcaa      5640
     caagctctaa tatgtatgac gtggtaaata atgcgttttg tgatgactga taaacacaaa      5700
     acaatctcgt tttagagcat tcaaacgaaa acaaaacttt gcacgattgc gttagataca      5760
     cacacgaaaa cgtttttgtg tggagtcttc ccgatgcaaa caaacattct tcatataaac      5820
     aagcacttca tagtgtatgt gtaaacataa aacatcagtc atcagcaaac tatttacttg      5880
     tatgtgtgtt gaacgacaat cagttttttt ttttgacagc tcattcccca atgaaaaaaa      5940
     gcatggatac aaaggaaatt tacacggaaa caaaactagg atggttttta tttttgctac      6000
     aattgaactt cgaaatacac tgtaggtttg aaataatttg aagtgaaact cttttttttt      6060
     tgagaagagg ggaga                                                       6075
//
ID   Gypsy-516_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-516_;
KW   Gypsy-516_AA-I; Gypsy-516_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3141-3141 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 75 A; 57 C; 53 G; 79 T; 0 other;
     tgtgcagcat gcagttgcgt taatagtttg actgtgtgta gtccaccgaa tataaagggt        60
     tctgctttat cgaccgcgcg ctccgatcgt agtcaacaag aattcaaata ttacataagt       120
     aggctgcgac taaaatcgca ccatggaaac atcctctttc cattttcaga ctcgacggcg       180
     tgtacacggg taagtaacat tactgctgga aattaattac taattctggt cgaccctttt       240
     tttcctataa tgtagaaatg caca                                              264
//
ID   Gypsy-518_AA-I repbase;    DNA;    INV; 4150 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-518_;
KW   Gypsy-518_AA-I; Gypsy-518_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4150
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4150
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3113-3113 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4150 BP; 1316 A; 651 C; 1077 G; 1106 T; 0 other;
     gtggcgacga gtgtaaatca cgtggtgtcg tgaggttaga aaacgtgcaa atatgctagg        60
     tgaaagtagt aagaagaaga tgagtgaaga aaacgtgagt gttggtgcga aattgattgg       120
     atctttggat aattttgtgc cgagcgcgga ttttgacgac tacatggagc gggccgagaa       180
     ttttttcgag ctcaacggta ttacggatga taccttcaaa agaaaactga tcgtccacta       240
     tatcggcctc cccgcgctga gaaagttgaa ccagttattg tacccgaaga cgcacaagga       300
     tgtaacgtac gaagtggtag tgacaaagtt aaaaacgtat tttagcccga aacgtaatcg       360
     aattgctcag tcggttaatt tttttaagcg gaaccagcaa gaatttgaga aggtggcaga       420
     tttcgcagtg gaacttcaag cgttgtctaa gcattgtgag ttcggggact ttttggacaa       480
     agcgttgcgt gacaaattca tcgccggtat ctcaaatacc aagattcagg gtgaattgat       540
     gaacagtgac gataattcga cttttgagca agcagtggct aaggcaaaag tgctagaaca       600
     aattgaagaa gacatgacga aaatgaaagt gaagaatggt gctgtgaatc gggtgaatac       660
     caatgctgga aactatgcta gaagagaccg aggaagaagt cgtgagcgga atggttccag       720
     aggccgtcgg agttcaacta gttacggtcg ccgaaattcg tggtcaaacg tgggaccacg       780
     gaagaagaga tctgatgtga ggtgttacaa ctgttccaag ttgggacaca tagcgaggtt       840
     ttgtcgattc ccaacggaaa gagtaaattc tgcggcgagt gctacggacg acgacggttc       900
     gagcacatgt tcggacggta gcaggccacg cgccatcaac cacgtggcat cggaagcgct       960
     ttatcacgat ctttgactat atggtaagtg cattagtttt gaggtagatt caggagcaac      1020
     ttatacgatt atgtcagaca gagattatag gatacatttt gcccaacatc cgctaagaaa      1080
     atctgaggtc caattggtag taatgactgg ggataaattg gtgataatgg gagagcttca      1140
     agttgaagta caaaagccta atgatgagag tgttcacttg ttgagtgcgg tgatagtgaa      1200
     aaggcaaagc aacaaaagtt ttgtgccatt gttaggacga aattggctgg acgttttgta      1260
     tcccggctgg agagatcggt ttgtgaactc tattaggggt tatgagaacc ggggattaga      1320
     tagagaacgc gcaatattgc tatcgcagat tagatctaga tacagtggaa ttattacgaa      1380
     gaatctggat gaaccaatcg agggtttcat ggctgagata cacttgaggg acgatgcgcg      1440
     tccgattttc tatagggcca atgaggtacc atacgcttta aaagagaagg tgagtgacga      1500
     gttagatcgg ctagtgcgag agaatattat caagccggtg aagaggagcg attgggcttc      1560
     tccgatagtg atagtcccga aaagtgatgg taacattagg ctatgcgttg attgcaaggt      1620
     tacgatcaat aaggtcatta atacagaaca ttatccgctc cccaacataa gtgatatttt      1680
     cgccaatctc agtggttatc gctattatgc gaaaatagat ttgtctggcg catacatgca      1740
     agtgagggtg tctgaagaat cgcgtaaata cttgacgatt aacactcata agggactatt      1800
     cgaatatttg cgtctaccgt tcggtataac gagtgcagca agcactttcc agagagttat      1860
     ggacgaaatt ttgaaggact tggaagggat tcagtgctat cttgacgaca ttctagtagg      1920
     aagtgataca attgagggtc tgaagcaaaa agtgctcgag gtgttcgatc gattgcaacg      1980
     gtataaagtg aaggttaatc tggaaaaatg tgagtttttg gtggagaaag tagcctattt      2040
     aggacatgaa atctcggaga acggattaag cccttgtgag gaaaaagtga aagcgatagc      2100
     taaagtgcct acaccgaagg acgccgctca gctcaaatca tacctgggaa tggtgaatta      2160
     ttattcgaag ttcgtgccta atctgtcgat acgattagca cctctctatg agctgataaa      2220
     gaaaaacgtt aaatttcggt ggtcggaaca gtgcgataaa gttttccagg agtccaagaa      2280
     aatgttgtta gataacagag tgttacagct atacgatcct aagcttccga tcgtggtgat      2340
     atgtgattca agtgccgttg gtgtaggggc ggtactatgt cacaagatcg gtgaggtaga      2400
     aagaccggta ttttacgttt cgagtacttt gtctaacgcg gagaagaact atcctaattt      2460
     acaccgagaa gctttggcta tagtgtttgc gttgactaag tttgcgaagt acatctttgg      2520
     gaagaaaatt acggtggtga cggacaataa gccgttggtg acaattttca atcaaaagaa      2580
     aggtataccg ccgctggctg cggccagact tcagaagtat gcgtatgcga tctcgatttt      2640
     tgactttgat attgtatata gaaagggaaa gaaaattcct gaggccgatg ctttgtcaag      2700
     attgccgatt gaaggagaaa caggggtaga ttcggatgtc ctagtgaata acgtgagaga      2760
     agaaatcccg ataaatttgg acttgattgg gaaagaaacg cagaaggatc agttctttcg      2820
     gaagttgtac aaatgtgtga gtcacggttg ggaagaccac gcggtaacgg acgatttgaa      2880
     atattactac gagagagtga gttccctgtc tacggaaggt gaatgtctga tgttctgtga      2940
     gagagtgatg gttcccttgt cttgtcgaga gcgtattctc gagctgttgc atggctgtca      3000
     tttgggcata gtccggatga agcaaatggc acgcaggtac gtttactggc gaggtatgga      3060
     cacagacatc gaaagattcg taaagggttg tagagcgtgt agtgtgactg gtagagctgt      3120
     taccaaagaa ttaacgcagt ggccttcagt gaacagaccg tttgaaagac ttcatgtgga      3180
     tttctgtcat atagccggaa aaacattgtt ggtgatagta gactcttact caaagtggat      3240
     ggatgttaag gtcatgaaga acacagatgc tcagtcggtg attaatgttt tggattcatt      3300
     tttttcgatt tttgggtatt gtgatacaat tgtctcagat aatggaccac cttttggaag      3360
     cgggatgttg aagagttggg caaaatggtt aggaataaag ttgatcaaaa gtcctagtta      3420
     tagtccggaa tcaaacggac aagctgaacg agcggttcag accgctaaga catcacttag      3480
     aaagctcctg aatgatcaaa actatatgca caaaaactta aacgagttga ttcgaatttt      3540
     tctcgtgagt aatagaaata gctacagtca agtcttaggt tgtagtccca atgatatgat      3600
     ttttaaattt gtaccaaaaa ctgaacttga cacgaaatta aagatcgtta aacaaaagaa      3660
     agtaacattc gatgataaag taagcttttc tgatgaagtt gtagagaaac gcattgtaaa      3720
     gaaaaataag gattttcaca agaaagcgtc taaaaatgtc agtagtacag aaactgttag      3780
     ggaaaaattt aaaattgatg accttgtctg gtataaaaat cagttcaaaa cggataggaa      3840
     ttggatggaa gctaaaattg ttggaatcaa tagtcctagt acttattaca tagatattag      3900
     tggtgcagtt aaactagcta gccaaaatca acttaaaaag agaattgtca aagattatta      3960
     catatttccg aaaaccacaa gaagtggatc aaaacgtaga agaaaattta gtacgtcatt      4020
     aattagtttt gagagaccgt tcaaacttag acgaagtgtt agaacaaaac gtaaaccaga      4080
     tttttttaga tattgaattg tgattgaagt atcgtagaaa taacgaaatt atttaattaa      4140
     agaagggaga                                                             4150
//
ID   Gypsy-518_AA-LTR repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-518_;
KW   Gypsy-518_AA-I; Gypsy-518_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-198
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-198
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3142-3142 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 198 BP; 62 A; 35 C; 39 G; 62 T; 0 other;
     tgataaatag tgtagaacaa acccctcgtt cttatctaga gcaacttgat agtgataaat        60
     tatcttgtcg attatgtaga gaagatcgtt tccggtacac atagtatata agtcgttgaa       120
     gatctttgta aaccctcttt cccgatctgg tggtcaataa agtaagtggt gagtaagacc       180
     caacgcaacg atttttca                                                     198
//
ID   Gypsy-519_AA-I repbase;    DNA;    INV; 4910 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-519_;
KW   Gypsy-519_AA-I; Gypsy-519_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4910
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4910
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3114-3114 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 4910 BP; 1606 A; 904 C; 1073 G; 1327 T; 0 other;
     ttggcgaacg aggttaagtt tccgtaggaa aaacggctgc gaagtgtctg gaagctcccg        60
     tgaaaatcga agctcccctc aagatcataa ttccaaaacc caaggatcaa ccgttggagg       120
     aaaaatggct acggtaacta taatagtgaa tttttgtgat gttgccgctg gaaatttcca       180
     aatatgaaat cagtcagcaa catgtgacga tcgtgattct agaccgtgaa ctcggttctt       240
     ctgcgcaggg aatgttacat tccagtccgc aaatgaaacc caggataacg aagggaatga       300
     aaagttccag cccgtatacc tggtctacta gcgcagggaa tgcagaattc cagtccgcaa       360
     ttgaaaccca ggacaacgaa gggaatttat tattccagcc cgtatacctg gtccaccggc       420
     gtagggaatg cagaattcca gtccgcaaat aaaaccagga caacgtaggg agaaatccag       480
     tccgtatacc tggtacacaa gcgaagagaa ttacgaattc tagtccgcag gaaaagaaga       540
     cgaagggaat ccttgaatga ttctagtccg tcagagaaaa aaatgtttgg aaattttcac       600
     tggtctccat ggtaactgtt gaaagaaacc cgtgatcaaa tccgacaaag caaaatcaat       660
     gctcactcga ttgttgtgtc attttcaatt tacagcttca tttcagcatt acacctttcg       720
     tagaaaatgg tgatggtcca acgtctactc gatgggaaaa ctggagagat cagttcgtct       780
     cgtacttggc attaaaggga atcgatgacc atggagagat gtatcgtgca ctgatgtgtt       840
     ttggtgggtc agatgttagg aagattgccc aaaatgttag cacggatgga ggttgtttgc       900
     tcgataatcc ttaccgggcg gccatggaaa tcctggacaa ctattacgct ccccggatgt       960
     cattgcgtta cgaaagattc agatttcgac aactccagtt taactctcat gagacattgg      1020
     atcagttcac gatgcgttta cgatctcagg cgtcactgtg cggtttcggt gagcaaattg      1080
     aagaaatgat gatggaccaa atcgtgtttg ctacgaagga agacgacaag ctcagagcca      1140
     aatatcttga ggctgataca tcgctggaag aaatgctgaa gattggtcga acttacgaat      1200
     cagtgaagca tcaagttcag gaatttcgaa gtgccctgcc acacccaatt gttccggctg      1260
     aggagttgaa cgttgttgat cgtaagaagg tccagaagtt gtgtggcagg tgtgctggaa      1320
     atcacggtga gaataaccgg tgcccggctc gtgattcgca ttgtaatttg tgtagaatgc      1380
     caggtcacta cgctcgatgc tgtcgaaggt caagaaaacc agtgaaacat tttgaccgaa      1440
     aattcaagaa gccacaagat aaaccgatgg atttcaaccg gagactcaag tttgttcgtg      1500
     aggtagatga cgtgaccaac aacgtggaag tgcgcgagct gttccacctt tctggaaaga      1560
     gaagagtgaa tggtgctgtt ggcggcgtga acatctgttt cgtagtggac actggtgctg      1620
     atgaggatgt ccttagtgaa gaagattgga aaatgctgaa acgaactgga ttcaccgcat      1680
     acgatgtacg caaaggcagc gagaaaattt ttcaagctta tggaagtcaa aaaccgttga      1740
     cggtgctggg tgaagttgaa gctgaaatca aggttggttc tgagagttgt atcagtacgc      1800
     ttcatgtgat tcaaaatgga aaatgttcgt tgttgagcgg aaagtcggca gaaaagcttg      1860
     gagttgtcaa gttcctccat gctgtgtcct ccgatgagct gcctcatatt aaaggtaagg      1920
     aacaatttta aattacatac atcaagaatg gattaaatta tgaaacttcc ataattagat      1980
     atgtgtgctt caatcagaat agaccgaacg gtaacaccag taagacaggc atataggcgt      2040
     ataccgatac ctttggaaga gattactctt ctaaaattaa aagagttaga aagtcaaggt      2100
     ataattgaaa aagttcatga agcatcagag tgggtttctc ccatgctagt gaaaaggaaa      2160
     agttcagatg atgtcagaat tataatagat ttacgacaag caaataaagc aatcgtcaga      2220
     gagattcatc ccttacccac aatggatcaa atgattagta aactcagagg aagtaaagtg      2280
     ttcactaaac ttgatgtaaa gcaagcattt catcaattgc tactcagaga cgattgccgt      2340
     tacattacga catttatttc accactcgga ttgatgcgat ataaaaggct agtctttggc      2400
     ttatcggctg ccccagaatt attccaaaaa tgtatggaaa cgattctcgg tgaatttccc      2460
     tggctcatca tttttataga tgatatctta atttttgcac ctaacattga cattctaaag      2520
     gtaaacttat atttacacat gaacagtttt tattattttt aaacatcttg tattatattg      2580
     tagaatcgca ctgaacttgt tcgtgctcgt cttcgggaaa aaaacgtttt gttgaatgaa      2640
     tccaaaacgg tagagaatgt ggaccaatta gattttcttg gctaccattt atcatctgaa      2700
     ggtgttagag tatcagatga aaaacttgaa gcagtaacga aattccggca accgaaatca      2760
     gccgaggaac ttagaagctt tcttggtcta gtcacattcg tgagtcgtta tataccagat      2820
     ctgtctaccg tagcccaacc gttaaacgct ctcacaagaa aaggtacacc tttccaatgg      2880
     aaagaggagc atcaacttgc ctttcaacgt ctaaaatcaa gtttagccaa aaatgaaaca      2940
     ttagcatttt tcgaccctga cttggaaaca tttttagttg cggatgccag tccagttggc      3000
     ctcggggctg tcctatttca aaaatctaaa gatggaaact acaaagttat aagctacgcc      3060
     tctaaaacac tatcagaagt agaacgacgt tacgcacaaa ctgaacgaga agcactagct      3120
     ttagtttggg cgccagaaaa gtttcattac tacctgtacg gcaaattctt ttggctcatt      3180
     actgatcaca agccactagt ctctattttc ggtgatcacg caaggccatg tgctagaatt      3240
     gaaagatgga agcttcgatt gatggcctat gattataaag ttatatatcg gccaggaaaa      3300
     tcgaatttgg ctgatccctt ttcaagactt tgtcatggaa aagacatttc tgtgaaaagt      3360
     tttgatgaag aaagcgaacg tattatatgt caagtgtcag cagattcgtg tcctgtagct      3420
     atacctatag ctgagattaa agaagcgact aaaaaggaca tagagatcgg cgaactcatt      3480
     aaatggttac catttcctgt gaaacgatgg ccgaaaacat taagtcagta caaaacaatt      3540
     gctaacgact tgtcaacaga tggtgacatt ttgttaaaag cgcacaaaat tgtcattcca      3600
     cggattttgc aacaacgagt attgcaacta gcccatgaac cccatttagg gatagatgct      3660
     atgaagaaac ggcttagaga aaaagtatgg tgggctcgaa tagatacgat ggtgaaatct      3720
     tatgtgaatt cttgcaaaga gtgcctactt gtttcggaac cagatgttga gcctatgtgt      3780
     agaacacaaa ttcctgatgg cccatggcgt aaactagctt tggatttcac tgaagtttca      3840
     aacggagtac atttgctagt gctggtagat tactattcaa gatatccgga agtagaaatt      3900
     atgtcttcaa caacggcaaa actaacaatt ttaaagctaa ggatgatttt tgctaggttt      3960
     gggtaccctg aacaaatagt ctgcgataat ggcccaccat tctgttcgga agagttcacg      4020
     aatttttgta aaatgaatgc agttactatc aatcactccg tgccatacgc accattccag      4080
     aatggccttg tggaaaggta caatagatca ttgttaaaaa caataaggat aagcactgca      4140
     atgggacgag attggaaaaa tgacatgtat gactatctat tagcatatcg taatactcca      4200
     cattctacaa ctaatgtagc cccatcaaag ttattgatgg gcaggatact aaaagacaaa      4260
     cttcctgttg cagaagatcc cgaaggagtt accagtataa tcgaaatagt atttcattat      4320
     gataaaagtt tttatattat ctaatttaac catttatttt acagcctgat gtaactgcaa      4380
     tgaagcataa tgacaaaaca agaaaagaaa aagggaaagt ctatggtgat aacagacgca      4440
     aagcaaagca ttcttcaatt gatgttggcg atcacgtaat tttgaagaac gtgatcaaac      4500
     gcaacaaatt gacgacaaat tttaatcctc agccatttgt ggttataaaa agaaacggaa      4560
     caaggatcac tgtgaagaat ttgactagcg gagtagaatt agatcgtcat gtcaatcatg      4620
     ctaaatgttt gatttccagc aatccattca gaagagatat tcatgatgaa acgagcacat      4680
     cagatgagaa cttgttagta gaccagaaac ccttcgagga taatttaaca tctagaacat      4740
     cggaagagtt atcaccgaga tcgagtaatc gatcaaagcg cgagaagaga aaacctgaat      4800
     acttgaatga ttattttatt tacaaatgtc caagattgat ttaattacgt taatagaata      4860
     agttcatttt attattcatc tatttcaact attataaaac ataggagaga                 4910
//
ID   Gypsy-519_AA-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-519_;
KW   Gypsy-519_AA-I; Gypsy-519_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-120
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-120
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3143-3143 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 120 BP; 41 A; 19 C; 25 G; 35 T; 0 other;
     tgtagtaggc tagcaagaat gagagatcat cgtagtaggc taagattatt aaaagaataa        60
     atctgtcact tgtattgtac caccgaagcg agaagtcgtc ttttatttag caccattaca       120
//
ID   Gypsy-51_AA-I repbase;    DNA;    INV; 7460 BP.
XX
AC   supercont1.286;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_AA_;
KW   Gypsy-51_AA-LTR; Gypsy-51_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7460
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.286; Positions 1356486 1349027.
XX
CC   Positions [4175-4636] - Reverse transcriptase
CC   Positions [5657-6133] - Integrase core
CC   'TGAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1551..3350
FT                 /product="Gypsy-51_AA-I_2p"
FT                 /translation="MRVQDLGCCLLPNLLKTEGALSAPRSQCTGQAPVTAS
FT                 AADRTVCTKYASLAFTPLDTATGLSTISPRCVECLSTHSWQRQALGMGILP
FT                 ASTSTTLPARSRAQPGTTKPSLNLDFPNTGHASKWTSERQASSLAKSGSPD
FT                 SPTYDLWPISAPEHVALSGLTNPCGCRTGYSPVSTGLAALRSNLLPPAQSA
FT                 TLVIGSLSNMLPQSRLATIVILFVVSLLIWIHHRYYPRWSESEAPPPVEHW
FT                 NLPDATFIPSDPPVPRAQSTLPTYAGNQNPAQRERRQPFFQPRKVIPVSQW
FT                 KIQKYKADDQGLGMNEFLENVGQMALSEHVCEEELFDSAIHLFDGPALSWY
FT                 TAMRSQNRLRDWNHLIQELQKAFRHPDLDAVLRVKIYQYRQQRNETFQQYY
FT                 LHMEKLFRSMSQPMSESDKVEVLKMNLRFDYRKLLVGRQITSLQTLLNLGN
FT                 DLDAADSSAFARVFGNSKKETCAINSGGVNPQNTRVFSNKNHNPGKSNQQS
FT                 KGETNFKTYTASKQPKADAKPANQSKAKMDNPSPKHEDRGARDPFSKIVNN
FT                 YRPPPNGECFNCRDNHNTSDCPLPRRLFCQICAFPGVAYKNCPYCSKNPTR
FT                 ES"
FT   CDS           3587..6511
FT                 /product="Gypsy-51_AA-I_1p"
FT                 /translation="MFNSTIFKRLSNVRLQDPAEPLDLVTASGDALEIAGE
FT                 VLVPYTFQGKTRVLPTLFVPGLAVDCICGIDFWRAYRIRPTVATLAITSQT
FT                 TKLNITVEDPPILTDKQKEILNQVRQSFKLASPEKLDTTPLIEHEIILGGE
FT                 FQNSKPVRQYPYPISPKIQAGLFSEIDRLLARGIIEESNSDWSLNIVPIRK
FT                 SSGDIRLCLDARKLNERTIRDAYPLPHPGRILGRLPQARFLSTIDLTEAFL
FT                 QIPLARGSRKYCAFSVQGKGMFQFTRLPFGLINSPATLARLMNRVLGQGVL
FT                 EPNVFVYLDDIVIVTETFEEHIRLLNEVARRLIEANLSIKLEKSHFCVAEI
FT                 PFLGYILSPRGLHTNPEKIRPIVEYERPTTVTKLRRFLGMSNYYRRFIADY
FT                 SRITAPLSELLKSNTKNLKWSVEAEEAFQNIKEKLITTPILASANFDHEFI
FT                 IHTDASDQAIAGVLTQEIDGREHVIEYYSKKLTTPERSYHATEKEALAALL
FT                 SIEHFRGYVEGSHFCLVTDSSALTFIMRTKWKTSSRLSRWSLTLQQFDLTI
FT                 LHRRGKDNVVPDALSRSVLAVSMRSDSDWYNTLKRKVMESPEDYPDFKVED
FT                 EQLMKFVFSSYPTDHRFDWKIVPAPEARKLIIASAHDDAMHIGVDKTIGKI
FT                 RQKYYWPRLTSDVRLHVQKCAICKEIKPANAPTVPLMGDMRPSNQPWQIIA
FT                 LDYIGPLPRTKSGKQYILVVMDLFSKWTQLHAFPSISVASLKTVLRDHWFF
FT                 RNSVPSIVLSDNASTFTSKEFGALLENYGVKHWLTSRYHSQANPVERVNRS
FT                 INTAIRSYARDDQRSWDTKLSEIEMIINSTVHSATGYSPFLVAKGQEVIVD
FT                 GRDYNRFQSDEELSLRERVDRIRETSPKIFDLVAKNLKSAYNLSSQRYNLR
FT                 HRKLAKPLNVGDKVYKRNTKQSNANEFYNAKLAAQYLPCTVVEKHGSSSYE
FT                 LVDSSGRNIGIWPANLIKSA"
XX
SQ   Sequence 7460 BP; 2085 A; 1841 C; 1689 G; 1845 T; 0 other;
     tttggcgccc aacgtggggc cggaataagg actggccgaa cgtttgtacc tgagccattg        60
     gcagcaggcc gctgttggcc actccgttta gaaagtttcc attgagattc tgggagttca       120
     gagccagact aactcccagg ctaagaagag ctccagcagc aatcgcatac tgcagcaaag       180
     tggaagcagt cccctgctct agaactctta tctcgtcccg cggcaccatc tcaacctcat       240
     cagatttcat ggcgtttagc cacctgtaga tggggttgga atcacttggt gcttgccaac       300
     ggaaatggga gaagggctcc agcgtgcatg tgaaccagta gttcactgca ggggcagccg       360
     gccttgcgtg ctcacgagtg cacaccaaag ccagcgcctt cacaaatcct aacgctagct       420
     gttgcatttc accacgactg cgcgctacat ggactaaagt cgctcgcatc tcctccgctg       480
     tgaaatccgc aatagcggga agagctccct gagccacacg ataatacacc gcggttggca       540
     cggcgaacca cagaatgcgt gccgccaccg gattggcgcg atccggtatc gcgttgaata       600
     cgcgctggga tcgcgacagg tggcgcaggc agttgatcat agaatcctgc aaatcggctg       660
     cgagatagac gaatcggcgt gctgttacgt cagcttcaaa attcgtcccc aagtcagcgt       720
     cggcaaaact acgtacataa aagtcgttgc catccagcca gacgtgccca agcgggtcac       780
     ctggatggcg gtcgattatc tctcgcaaaa acattagcag ccagcctttc gcatacatgg       840
     ccgtattgtc catgatgtca ggtgacaacg tgacgtaatt agccatgatt tgggctacgg       900
     ttaggtccac gcgaatggct gcagctagag aagcggctaa agccctggta ttataattcg       960
     tcttatcgga taaaaagccg gcaagcaggg tgtcatcggt ccgccctagt ctatgaccgc      1020
     cgatgacaga caagttcaca ttggccacat cgacgtgcca cagtgagaag tccccttgtg      1080
     ccacccactc attcgtttgg gtataagggg catttgggat caaatgagtc acaacaccca      1140
     ttgacccatt gacaacatcc tcaacaatgt tgtcacctaa agaagtagaa attcgattcg      1200
     ctagccaaga tagaatattc tgctgggatg cgctcgatgc caaagagcgg ttcatctcag      1260
     cgcaaccatt gccgacgatc gaatggtcac cgaagtgagc aaggcgtggc gcggttggct      1320
     tagaaccggt tgcaatggcc ttccccttgg atcgcactcg tttgcggccc ttcgtgccgc      1380
     ccgacgtcgc atggctgttg tcaatagtca aattcgatag tgagcccccc ggatatggtg      1440
     ggggcccgcc agctggaagt tcagaaatgc ggattttgga gaacttagaa catgtcggat      1500
     tgatgccagg cttccccaaa gctacctgga ccccgacgtg acggtgtttc atgcgtgtgc      1560
     aagacctggg gtgctgcctc ttgcccaact tgctgaaaac tgaaggtgct ctttcggcac      1620
     ctcgttccca gtgtactgga caagcgcctg tcacagcatc agcagcggac aggacagtgt      1680
     gcacaaaata tgcttcactg gcctttacac ctctggatac tgcgacaggg ctcagcacaa      1740
     tctccccgcg ctgcgtggag tgcctaagca cccactcatg gcagaggcaa gcactaggca      1800
     tgggaatact cccagctagc acatccacta ccctaccagc acgttctcgg gcccaacctg      1860
     gcacaaccaa accgtctctc aacctagact tcccaaatac tgggcacgca tcaaaatgga      1920
     cttcagaacg ccaagcaagc tccttggcga aatccggcag cccagactcc cctacatacg      1980
     acctttggcc tatttcagcc ccggagcatg tcgccctctc cggattgacc aacccttgcg      2040
     gttgtaggac ggggtacagc cccgtctcaa ccggcttggc agcccttcga tctaacttgc      2100
     ttccaccagc gcaatcggcg acgctagtca ttggttcctt gtctaacatg cttccacaat      2160
     cgcgactcgc aacgattgtc atactgtttg tggtcagttt actcatctgg atacaccacc      2220
     gctattatcc ccggtggtcg gagtcagaag ctccaccacc ggtggagcac tggaacctcc      2280
     cagatgcaac tttcattcct tctgaccccc cagtccccag agctcagtcc actcttccaa      2340
     cgtatgctgg aaaccaaaat cctgctcaga gggaacgacg tcaaccgttt ttccaacctc      2400
     gaaaagtgat cccggtatca caatggaaaa tacagaaata caaggccgat gatcaggggc      2460
     tgggtatgaa tgaatttctg gaaaacgtgg gtcagatggc tctttctgaa catgtctgtg      2520
     aagaagagtt gtttgactca gcaattcatt tatttgatgg ccccgcactc agctggtata      2580
     cggccatgag aagccaaaac cgactgaggg attggaatca tctgattcag gaactgcaaa      2640
     aagcatttcg tcaccctgat ttggacgccg tgttaagagt caaaatctac caatatcggc      2700
     agcagcggaa tgagactttc cagcaatatt acttgcacat ggaaaaactc tttcgcagta      2760
     tgagtcaacc aatgtctgag tcagacaagg ttgaagtact aaaaatgaat ctgagattcg      2820
     actatcgtaa gctgttagta ggaaggcaaa taacttcctt acagacattg cttaaccttg      2880
     gaaacgacct tgatgccgcg gactcctcgg cctttgccag agtattcgga aactctaaaa      2940
     aggaaacctg tgcgataaac agtggagggg tgaatccaca gaatacacga gtgttctcta      3000
     acaaaaatca taatccggga aaatccaatc aacaatcaaa aggtgaaacg aatttcaaaa      3060
     catatactgc ctcaaagcaa cctaaagcgg atgccaaacc tgctaatcaa tctaaggcaa      3120
     aaatggataa cccatcccct aaacacgaag acagaggagc cagagatccg ttttcaaaaa      3180
     ttgtgaacaa ttaccgccct ccacccaatg gggaatgttt caattgtcgg gacaatcaca      3240
     acactagcga ctgtccattg ccaagacggt tgttttgcca aatttgtgcc tttccaggag      3300
     tagcgtacaa aaattgtccg tactgctcaa aaaacccgac acgggagtcc taaagtcgca      3360
     ggttcctcgt ctagcgccaa tagaaaacca cttcaagaaa cttattttgg agctcaaaga      3420
     tcactatgag ccccgtttgc ccgaaactga gcacgaaaac cgtctgccac aagtaaataa      3480
     gatcactctt acctccccag atggcgagga tgatcgtcct cacgtacatt tgaaaatctt      3540
     tgacgtgcct gtttatgcgc tcttagacag tggaagtcat aggactatgt tcaattccac      3600
     tattttcaag cgactctcta atgtccgtct tcaagatcca gctgaaccgc ttgatctagt      3660
     cacggccagt ggtgatgctt tggaaatcgc aggagaagtt ctagtaccct acactttcca      3720
     agggaagacg cgagttttac caacactgtt tgtcccagga ttagccgttg attgcatttg      3780
     tggcatcgac ttttggcgag cttatcgtat tcgaccgaca gtcgccaccc tggccattac      3840
     ttctcagaca accaaactca acatcacggt tgaagatccc cctattttga ccgacaaaca      3900
     aaaggaaatc ttaaaccagg tgaggcaatc ttttaagctt gcttcccctg aaaagctgga      3960
     tactactccg ctaatagaac atgaaatcat tctcggaggt gaattccaaa atagtaagcc      4020
     tgtccgacaa tatccttatc cgatttctcc aaaaattcag gccggtctgt tctctgaaat      4080
     agatcgttta ttggcccgag gaataattga ggaatctaat tcagattggt ccctgaatat      4140
     agttcctatt cggaaaagtt caggggatat ccggctatgt ctagacgctc gcaaacttaa      4200
     tgagcggacg attcgcgatg cttatcccct acctcatcct ggacgcatcc ttggtcgact      4260
     gccacaggcc cggtttttga gcacaataga tctaacagaa gcatttcttc agatcccttt      4320
     ggctcgtggt tcacgaaaat attgtgcttt cagcgttcag ggtaagggga tgttccagtt      4380
     caccaggctc ccattcggcc tcatcaacag tccagcaaca ctggcccggt tgatgaaccg      4440
     agtgttgggg cagggtgtac tggaaccaaa cgtcttcgtg tacttagacg atatagtcat      4500
     agtcacggag acgtttgaag aacatattcg cctactcaac gaggttgcga gacgcctaat      4560
     agaggccaat ttgtcaatca aattggagaa atcccatttc tgtgtggctg aaatcccttt      4620
     tttgggatat atcctgtctc ctcgtgggtt gcacaccaat ccagaaaaga tcaggcctat      4680
     cgtggaatat gagagaccaa cgactgttac taagctccgc cgatttctcg gcatgtcaaa      4740
     ttactatcga cgttttatcg ccgattatag tcgcatcacc gccccccttt cagaactttt      4800
     gaagtcaaac acaaaaaatc tgaaatggag tgtagaggcg gaggaagctt tccaaaatat      4860
     aaaggaaaaa ctcattacca ctcccatact cgctagcgct aacttcgacc acgagttcat      4920
     tattcacact gatgctagcg atcaagctat tgcgggtgtg ttgactcaag agatagatgg      4980
     ccgcgaacat gtgatcgaat actactccaa aaagttgact actcccgaac gtagctacca      5040
     tgccaccgaa aaggaagcgt tggccgcatt gctgtctatc gaacactttc ggggctacgt      5100
     ggaaggtagt cacttttgtc ttgtaaccga ttcatccgca ttaactttta taatgcggac      5160
     gaaatggaaa acctcctcgc gattgagtag atggagcctg acactccagc agttcgacct      5220
     caccatactc caccgtcgtg gaaaggataa tgttgtaccg gacgccttgt cccgaagcgt      5280
     tctggcggtt tcaatgagat cggactcgga ctggtacaat accttgaaac gaaaagtaat      5340
     ggaatctccc gaagattatc cggactttaa ggtcgaggac gagcaattga tgaagtttgt      5400
     tttctccagt tatcctactg atcataggtt cgattggaag atcgttccgg cccctgaggc      5460
     aagaaaactt atcatcgctt cagcacatga tgatgccatg catatcggag tcgacaaaac      5520
     gatcggaaaa atccgtcaga aatattactg gcccaggtta acatccgatg ttcgcttaca      5580
     cgtgcagaaa tgcgcgatat gcaaggaaat taaacctgct aatgccccta cagtcccatt      5640
     gatgggagat atgcgcccct ccaaccagcc ttggcagata atagcccttg attatatcgg      5700
     ccctttgcca agaaccaaat caggaaagca gtatatcctc gtggtaatgg acttattcag      5760
     taaatggacc cagctgcacg cttttcccag tatatcagtg gcttctttaa aaacggtact      5820
     acgggatcat tggttctttc gcaattcagt tccgtcgatt gtgttgtcgg ataacgccag      5880
     taccttcaca tcgaaagaat ttggcgctct actggaaaac tatggagtga aacactggct      5940
     tacgtccaga tatcactctc aagccaaccc agtagagcgc gtaaatcggt cgataaatac      6000
     ggccattcga tcgtacgccc gagacgatca gcgatcgtgg gacacgaagc tgtccgagat      6060
     cgaaatgatc ataaattcga cagtccattc agctacaggt tattcacctt tcttagtagc      6120
     taaaggtcaa gaggtcattg tcgatgggag agactacaac cgttttcaaa gtgatgaaga      6180
     actatctctt cgagagagag tagaccggat aagagaaact tctccaaaaa tctttgattt      6240
     agttgcaaaa aatttgaaaa gcgcatacaa cttgtcgagc caacgttaca atttgcgcca      6300
     ccgaaaattg gccaaacctc tgaacgtggg agacaaagtg tacaagcgaa acactaagca      6360
     atccaatgca aatgagttct acaatgctaa gttggctgca caatatttgc catgcactgt      6420
     cgtagaaaaa catggatcct cctcttatga gttagtcgac tcatcgggtc gaaacattgg      6480
     gatttggcct gcaaatctga tcaaatctgc atagacagat ttatgggaac aatcaaacaa      6540
     tagttctgta gttctaactc ctctgattcc tacctctcaa tttccatgga tgaacctaga      6600
     aagaacaaaa gaattagttc atgactatgt ccctctgagg gtaatgacat gtagagctta      6660
     ccggttgata gtgaatcagc tgtccaattt gaaggccact gcagggctgg atatgctgga      6720
     tagcattaga accgtcgaaa atcggtaaat gttcccaaca agcaataaaa acttcatccg      6780
     cgaattcgaa acaaaaaaga tgcatcattg aattatatcc atgcgtgcgc ggatcatgga      6840
     ccatgctgat cagatatcga tcactcactg aagtcggatc attgtccgct gtctcggtta      6900
     gccgaatcat gagtaaccga attgtgtata ttatatagta attgtataga tccgaagcaa      6960
     tagtgccgaa gtctcaaaat tcgagcagtt tcctttgtag cagtttatat acagaaaatc      7020
     agtttgcgtt cgagaattga acgatcataa gtttagggtg gatgaaatca agaaccgatc      7080
     atctctccag tgtcaaataa aacgtcgatg gacttggatc ggtcttaaaa agttacgtaa      7140
     cgtcaaccgc gcgtgtaaat atttaagtgg cttcgttagt tataagttta atttcattat      7200
     tagcatgttc aaaattcgtt tattttccgt ttgcgttcaa attgcatgta tttttcgttt      7260
     cgttaaaata agtttatgaa aactctcgct aagtatttcg aagaagaaaa ttatctaggc      7320
     ataataaaac ggtcgttcgt tcatatattg ccactcaagt agtggacgca ctagcttcat      7380
     aagaaaaagt aagtgaggtg gtgtttgggt ttaacacaga aaaagaaata tttctttttc      7440
     ttactcgacg acagggggat                                                  7460
//
ID   Gypsy-51_AA-LTR repbase;    DNA;    INV; 1160 BP.
XX
AC   supercont1.286;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_AA_;
KW   Gypsy-51_AA-I; Gypsy-51_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1160
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.286; Positions 1349026 1347867.
XX
SQ   Sequence 1160 BP; 274 A; 345 C; 285 G; 256 T; 0 other;
     tgtaaccagg aaatggttac agtttctaca gctcaacatg ctgagagaat atttgtccaa        60
     atgcgatttc accaccttga tggattatgc aaagtggggg aatgttttag agccctatta       120
     ctccgggagg tgctaccaac cagtgggtag ctgccacgaa atctcctaca ggtggctagg       180
     tggctatggg tggagcaatg acagtgacaa gagaacggat gtggggagaa cggaacgaac       240
     gaaagtcgaa ccgggtcgga catgagggtt tggatcagat tttttggcgc gatcgaggat       300
     tttaatcgag accacagaac gagacacatc gacgagcata cgaactctga gcaagtgaag       360
     tctgcggtgg ttaccattaa ccgcgaagaa cccaagtcgc cagataatcg attttcccag       420
     ccgagcctcg atttgtcgag tggacattct ggttcaggtc cagtttagaa gccccttggg       480
     ctctagtaga agaagccttg cctgccattc cagttcgtcg gagccacagc attcatctac       540
     accgcgtggc ccgcattgtt cagtgccaag aacctacgtc gctcacggca ttacacccga       600
     agcttcgccg ctaaaccgcc ttcgtcatct gcgaccgtca cctccatagg tcgaccgccg       660
     gattcccgcc atcgctcatc ctgggagtct gttgaggcat accaccttcc cacgtcgttc       720
     atccaccacc catctactca ggccggccgc ctcgccacgt cgtccaccct actcccaaca       780
     attcaagact accgcctcgg tcagccgtcc atcaccatcc cgctgtgacg ctatcggggc       840
     accctccgtc gcccacattc cacggcctcc gccgttggtg gtttcctcgc tgccttggag       900
     agacagcgta tattctgtac cgtgagtcaa tacaaaactt taaaactaac cctaatttgt       960
     atgctaacaa ggtccgaaaa cctccccact acctcctcta acgaccctgg gactcgagga      1020
     ccccaaaaga ggccttttga gcccgccccg ctgactgccg ttggtcagac cagcagtctg      1080
     gggttttgac cggttcccca tctgggcttc ggtgtccgat cctcgagggc taagagagcc      1140
     gtaccagaaa aacggtaaca                                                  1160
//
ID   Gypsy-51_AnFu-I repbase;    DNA;    INV; 5144 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5144
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2935-2935 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           870..1814
FT                 /product="Gypsy-51_AnFu-I_1p"
FT                 /translation="MDNKQNFPLEPFNDAVDTSGLRREWEEWHRACEIVIE
FT                 LKRLESQHEKLLFMLAKGGRGLQRIYHHLAPVTGEIHPEPPKVPMAPQETP
FT                 EYDNAVKRLNAFFVGKRNERVELEIFRSLSQKHGETFNRYMLRLRTQAACC
FT                 DFKDREEKEILHQITVGASDERVRDKGIEGTMDLDSLINYAMNREVILKQK
FT                 EKAHPMRQEDAVVAWINRNTNKKTTSQRNYSSQKVNRTSQECSRCGSERHQ
FT                 SDFKNCVARNSTCNRCGKLGHFARKCAGNRYTPRTSRFSWKRSEVANALLD
FT                 DGDVAEQGRLCGYRKDCASPKVE"
FT   CDS           1995..5039
FT                 /product="Gypsy-51_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QGDTNYNNGMIMGFIDQLAVEFLIDSGAMINTITEQV
FT                 WTNLVNTNARIFKRKFQCDRQITAYATQEPLQVLTIFEAFISINESKPKTY
FT                 AEFFVIKGAQRSLLSKRTAEELKVLKVGLEVNNIGQKKEPFPKFPNILLKL
FT                 CIDHKVTPKKLAYLRIPFAMEEKVERKLQEMLDKDIIEPVIGPASWISPMV
FT                 VVPKGTDDIRICINMRYPNTAIQREHYPLPIIDTLLNKLKGAVIFSKLDIT
FT                 SAYYHVELHPDSRKITTFMTGKGLMQFKRLMFGINCAPEIFQRIMCEMLAD
FT                 VDGVLIYIDDIVVWGTTHLEHNTRLRKVLAILKENNALLNNDKCVFNVPEL
FT                 QILGFKINAQGISPTEDKILAIQNFRLPETKEEVRSFLGLVNFVGQFIPNL
FT                 SSKTEALRSFIRGEAESFGMDQQKAFNDLRKELASTVHRLGFFDPNDVTEL
FT                 YVDASAVGLGAVLTQRNSRHQSRIITFASKGLTKTERVYPQTQREALAVVW
FT                 AVEKLHYYLFGKRFTVFTDHKTLEYIFGGKHQEGKRACSRAEGWALRLQPY
FT                 DFKVVHIPGSDNISDILSRLCPPGSTPFDEATEHYVCEITTEQLAITLEEI
FT                 KQQTGMDETLKAVTKAIETKTWPATLLRYQAFASELGIINGIIVRNDRIIL
FT                 PETLRQRALEIAHRGHPGVVAMKRNLRDKIWWPYMDRDVQEWIQECAGCAM
FT                 VSQQNPPEPMQRKEMPDRAWQELAIDFFSAKECATFLVVVDYYSRFLSVIE
FT                 MKTTNANKTIEALESVFRHHTYPETIRADNGPPFSGEEFTKYCQGKNIRLV
FT                 RTIPYWPQMNGLVERQNQGILRTLRIAKAMKEDWRKAIDEYVYTYNTTPHS
FT                 VTGKSPMELLTGRPVKDLLPSLRTDPYWYRDEETRDRDRIKKMQGKLYADA
FT                 RRHATESQIAVGDPVLIRNHEMGKLEPTFRPERYTVVQRRGTDVVVESADG
FT                 VKYRRPIAHLKRWPGSQHEENIPEVVDHEEKTQPHHCVTPPLKRPKRSTKV
FT                 PARYKESGI"
XX
SQ   Sequence 5144 BP; 1799 A; 1010 C; 1201 G; 1134 T; 0 other;
     attggcgcag ccggtaggat cgacggtgag tgtgaaaaga aaccgtttaa tttagcgagt        60
     tatatgtgtt tgcaagcgga gaattgcagt gacttccaaa cgattttctt gacgcatttc       120
     ttggaaaccg tgtttagtac ataggacgaa atctgagacc agagtagata aatgtaatga       180
     actcatctat atgtggcgtg gggtaaggca cacacacaga aaaaaaaaga ataaagacaa       240
     ggaaagaaag aacaaacgcg agtccggtag caataccgca gcgcacatta aaaaagagaa       300
     ggaaagagaa aagaaaaaag cgagtccggt agcaacaccg tagcgcacac taagaaacaa       360
     aatagaagat gcgagaccgg taaaacaccg tagcgcacaa ccaaaaaaga aagaacaaac       420
     gcgagtccgg tagcaatacc gcagcgcaca ttaaaaaaga gaaggaaaga gaaaagaaaa       480
     aagcgagtcc ggtagcaaca ccgtagcgca cactaagaaa caaaatagaa gatgcgagac       540
     cggtaaaaca ccgtagcgca cactaagaaa caaaaaaaaa aaaaaaaaaa aatgcgagac       600
     cggtaatact ccgcagcgca cactaaaagg aaagaacaaa tacgagtcca gttgagcacc       660
     gcagtgcaca ttaagaaaaa ctgatccatg gctatataaa ttggccgatt aaaaagaaaa       720
     ttaaaggtgg acagtggttt agataacttg caaagacata acggaaaaac tcgcaaaata       780
     gtggttcata aaattccttc agggtggtta gatcaagtag catattttaa gtaagaagca       840
     tacattaata attgtgcttt cactaacaga tggacaataa gcagaacttt ccgttggaac       900
     cgttcaacga cgctgttgac acatcaggac tacgtagaga atgggaggaa tggcaccggg       960
     catgcgagat cgtaatagag ttgaagcggt tggaatcaca gcacgagaag cttcttttca      1020
     tgcttgcaaa gggcggtaga ggcttacaac ggatttacca ccatcttgcg ccggtaacgg      1080
     gggaaataca cccggagcct cctaaagtac caatggctcc ccaagagact cctgagtacg      1140
     acaacgccgt caaacgcctc aacgcattct ttgtagggaa gcgaaatgag cgggtggagt      1200
     tggagatttt ccgatcgcta tcccaaaaac acggggaaac cttcaatcgt tatatgttga      1260
     gattacgtac gcaggctgct tgttgcgact ttaaagatcg tgaagaaaaa gaaatcttac      1320
     atcaaataac ggtaggggca agcgatgaaa gggtacgcga caaaggtatc gaaggcacaa      1380
     tggaccttga cagtctgatc aactatgcca tgaatcgaga ggtgatacta aagcaaaaag      1440
     agaaagcaca cccaatgcga caagaagatg cagtagtggc atggatcaat cggaacacga      1500
     acaagaagac gacatcacaa agaaattatt cctcgcaaaa ggttaaccgt acatctcaag      1560
     aatgcagccg ttgtggttca gaaagacacc agagcgattt taaaaactgt gtcgcacgga      1620
     attcgacatg taacagatgc ggaaaactgg gacatttcgc aaggaagtgt gcaggcaatc      1680
     gatacacacc aagaacgagt cggttttctt ggaaaagatc ggaagttgcc aacgccttgc      1740
     tcgatgacgg ggatgttgca gagcaaggaa ggctttgtgg atatcgtaag gactgcgcat      1800
     cacccaaggt agaatgatgt tgtttttatt ttttttttat tgtttccttt tgttattttt      1860
     ctatatctac atagtacatt tcttatacta aaataataat gaacactaat agaagttgga      1920
     aggaatatgg tatcaatgaa ataattataa aaaaaatgaa cagccactcg cctaacattt      1980
     tattcttttt ttagcaggga gacacaaatt ataataacgg aatgattatg gggtttattg      2040
     atcaacttgc agtggaattt ttaatcgatt cgggggctat gatcaataca atcacggaac      2100
     aagtgtggac taatttggta aatactaatg ctagaatatt caagagaaaa tttcaatgtg      2160
     accggcagat cacagcatac gcgactcaag aaccactgca agttttgacc atttttgagg      2220
     cttttatatc catcaacgag agcaaaccca aaacatatgc ggaattcttc gtcataaagg      2280
     gagcgcagag aagtctgctt agcaaaagaa cggcagaaga gcttaaagtg ttaaaagtcg      2340
     ggttggaagt caataatatc ggacagaaaa aagaaccatt tccgaagttc ccgaacatac      2400
     tgctaaagct atgcattgac cacaaagtaa ccccaaagaa gcttgcatac cttcgtattc      2460
     cgttcgcgat ggaggagaag gttgagcgga aacttcaaga aatgctggat aaggatatta      2520
     ttgaaccggt tatcggtcca gcaagttgga tatctccaat ggtagtggtt cctaaaggga      2580
     ctgacgatat ccggatatgt atcaacatgc gttatccaaa tacagctatc caacgtgagc      2640
     actatccact ccctataatt gatacgttgc ttaacaaact taaaggagca gtaatatttt      2700
     ctaaattgga tataacatca gcttactatc atgtcgaact acatccagac tcaaggaaga      2760
     ttaccacgtt catgactggg aaaggtctaa tgcaatttaa aagacttatg tttggtatta      2820
     attgcgcccc agagatattt caaaggatta tgtgtgaaat gcttgccgat gtagatgggg      2880
     tgttaattta tattgatgac atcgtggtgt ggggaacgac gcatttggag cataacacac      2940
     gactacgcaa ggtacttgct atactaaaag aaaataacgc attgcttaac aatgacaaat      3000
     gcgtattcaa cgttccggag cttcaaatat tgggctttaa gatcaatgca cagggcataa      3060
     gtcctacgga agataaaatt ctggccatac agaactttag actacctgaa acgaaggaag      3120
     aagttcggag tttcctagga ttagtcaact ttgttggcca gtttatcccc aatctgtcat      3180
     cgaaaacgga agctttgcga agctttataa gaggagaagc ggaatcgttt gggatggatc      3240
     aacagaaggc gttcaacgac ctccgtaaag aattagcaag cacggtccac cggctggggt      3300
     tctttgatcc gaatgatgta acggaactat acgtagacgc atcagccgtg ggccttgggg      3360
     cggtattgac ccagaggaat agtcgacatc aatcaaggat catcaccttt gcctcaaagg      3420
     ggcttacgaa aacggaaaga gtgtatccac aaacccagcg agaagctctg gcagtcgtgt      3480
     gggccgttga aaaactccac tactatcttt ttgggaaacg ctttacggtg tttacggatc      3540
     acaagactct agagtatatc tttggtggca aacatcaaga agggaaacgg gcttgctcca      3600
     gagcggaagg atgggcattg cgactacagc cctatgactt taaagtggta catatcccag      3660
     ggtccgacaa catctcggac atcctttcca gattgtgtcc acctggcagt acgccttttg      3720
     acgaggctac cgaacactac gtatgtgaaa tcactacgga acagctagcc attacattag      3780
     aggaaattaa acaacaaaca ggtatggacg agacattaaa agcggtaacc aaggctattg      3840
     agactaaaac atggccagca actctgttga gataccaagc attcgccagc gagttaggga      3900
     taatcaatgg tataattgta aggaatgatc gcatcattct gccagaaact ttacgccagc      3960
     gagcactaga aattgcacat cgtggtcatc ctggagtggt ggcgatgaag agaaatttac      4020
     gagataaaat ctggtggccg tatatggatc gagacgtgca agagtggata caagaatgcg      4080
     ctggctgtgc tatggtgagc caacaaaatc ctccggaacc catgcagcgg aaagagatgc      4140
     ccgatagggc atggcaagaa ctggcaatag acttcttttc ggcgaaagaa tgtgccacat      4200
     ttctggtcgt tgttgactat tacagccgat tcctttctgt catcgagatg aaaaccacta      4260
     atgcaaacaa aacaatagaa gcccttgaaa gcgtttttcg ccatcatact tacccggaaa      4320
     caataagagc tgacaacggg ccaccttttt cgggtgaaga atttactaag tattgccagg      4380
     gtaaaaatat ccgtctagtg cgtacaatcc cgtattggcc gcagatgaac ggattagtag      4440
     aacgacaaaa ccaaggaatc ctacgaactc taagaatagc caaggcaatg aaagaagatt      4500
     ggaggaaggc tattgacgaa tatgtctaca cctataacac cacgccacac tcggttaccg      4560
     gtaagtctcc aatggaactg ctgactggaa gacctgtaaa agatttgctc ccgtcactaa      4620
     gaacagaccc atattggtat cgtgatgaag aaaccaggga cagagatcgc attaaaaaaa      4680
     tgcagggaaa gctttacgcg gacgcaaggc gacatgctac ggagtctcaa atagcggtag      4740
     gagacccagt attaattcgc aatcacgaaa tggggaaact agaacccact tttcggccag      4800
     aacgatacac agtggttcaa aggagaggaa cggacgtagt agtcgaaagt gcagatggag      4860
     taaaataccg ccggcctata gcccatctga aaagatggcc ggggtcacaa catgaggaga      4920
     acatcccaga agtagtagac catgaagaaa agacccaacc acatcactgc gtaacacctc      4980
     ccttaaaacg ccctaagcgg agtaccaaag ttcctgcgag atataaggaa tccggcatat      5040
     aaaacattgg acattgcaga tacaaacaag aaatcgagta aaaaaaaaaa aaaaaaaaaa      5100
     aaaaaaaaaa aaaaaaaaaa aaaaaggtag ggctaggtga ggga                       5144
//
ID   Gypsy-51_AnFu-LTR repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-176
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2863-2863 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 176 BP; 58 A; 30 C; 48 G; 40 T; 0 other;
     tgtagagtat tggattatag caggtaaact ctagtaacat taagccgact ccttgagagc        60
     gggttgtaaa cgacggactt gggggaatgt aggattagcg ggagttggat gccaacagtc       120
     gccacgagag gatccattac cgtgatataa cgaatacaaa taaagagaac tctaca           176
//
ID   Gypsy-51_CQ-I repbase;    DNA;    INV; 1948 BP.
XX
AC   AAWU01036160;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_CQ_;
KW   Gypsy-51_CQ-LTR; Gypsy-51_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1948
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 481-481 (2011).
XX
DR   Genome; AAWU01036160; Positions   12693   10746.
XX
CC   'ATTTT' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..1871
FT                 /product="Gypsy-51_CQ-I_1p"
FT                 /translation="MSSDPELKNAILKLTSLIATQQEQITALQQANANPSG
FT                 SEKIIESLATAIEEFRYDPDDGIFFDAWFARYEDVFKEDGKHLDDKAKVRL
FT                 LLRKIGTQFHERYVNSILPKHPRDFKFDETITKLKRLFGRQTSLFHARYQC
FT                 LQYAKNEADDFSSYAASVNRHCEAFQLKKLSSDQFKALRFVCGLQSPRDAE
FT                 IRTRLISKLEAEEANPQPEPPAKGAAPRLTLENLVEECHRIINLKQDTQLV
FT                 EKTEKLNIHAVAKQPRPTATEKKVPSSPCWLCGDMHYVRDCSYKDHMCSRC
FT                 KRQGHKEGYCSMAEQKSSKQVEQPRSKDFVTSKGIRLVKQTDLKQKRKYIR
FT                 IGLNGTTVQMQLDSASDITMISKNVWAQIGQPHIHAADVNAVGAAGGRINI
FT                 IGKFNANITVQSVTKEGCIYVTGDPDFNVGVGDRHNRSIRSVVDSVQLAVR
FT                 LESRSTPRIAWTLQLNSAACQESGGINGSVWTQRLHTQSAIQRGRRRSGTT
FT                 RRPGRLKSNLRRSTCGACRQCSRTRSSSVADIERRHQAYRQQFLRQRRPSG
FT                 CPAIISEAVNKVQPSHFSDGCKRSPESCRRGESGGHKHRLVQAVKRRSRTT
FT                 PVLDAT"
XX
SQ   Sequence 1948 BP; 499 A; 571 C; 526 G; 352 T; 0 other;
     gtttggcgac gaggaaaagc agaaaagttt tcaagcttcg cgaagttcaa ggtctcaaga        60
     tgtcgtctga tccagaattg aagaacgcca tcctcaagct gaccagtctg atcgccaccc       120
     agcaggagca gattacggca ctccaacagg ccaacgcaaa tccctccggc agcgagaaga       180
     tcatcgagtc attggcaacg gccatcgagg agttccgtta cgacccggac gacggaattt       240
     tcttcgatgc gtggttcgcg cgctacgagg acgtcttcaa ggaggacggc aagcacctgg       300
     acgacaaggc gaaggtgagg ctacttctac gcaagatcgg cacgcagttc cacgagcgct       360
     acgtgaacag catcctgccg aaacaccccc gagacttcaa gttcgacgag acgatcacga       420
     agttgaagag gctcttcggg cgacaaactt ctctcttcca cgcccggtac caatgtctcc       480
     agtacgcgaa gaacgaagcg gacgatttct cttcgtacgc ggcatcggtc aaccggcact       540
     gtgaagcgtt ccagctgaag aaactgtcca gtgatcagtt caaggcgctc cggttcgtgt       600
     gcggtctcca gtcaccgcgc gacgctgaaa tccggacgag gctgatcagc aagctggaag       660
     ccgaggaggc caacccccaa cctgaacctc ctgctaaggg cgcagcacca cggctgacgc       720
     tcgaaaatct ggtcgaagag tgccatcgga tcatcaacct caagcaggac acgcaactgg       780
     ttgagaaaac cgaaaaactc aacatccacg ccgtcgctaa gcaaccacgg cctactgcga       840
     cggagaagaa ggtgccaagt tccccgtgct ggctctgcgg tgacatgcac tatgtcagag       900
     actgcagcta caaggaccac atgtgcagca gatgcaagcg gcaagggcac aaggaaggct       960
     attgctccat ggccgagcag aagtcgtcga aacaggtcga gcagccaagg tctaaggact      1020
     tcgtcacgtc caagggcatt cgcttggtca agcagacgga cctgaagcag aagaggaagt      1080
     acatccgcat cgggctcaat gggacgaccg tgcagatgca gctggattcc gcttccgaca      1140
     tcacgatgat ctccaagaac gtgtgggcgc aaatcggaca accccacatt cacgccgcgg      1200
     acgtcaacgc cgtgggtgcc gctggaggtc gcatcaacat catcggtaaa ttcaacgcca      1260
     acattaccgt ccagagcgtc acgaaggaag gatgcatcta cgtcacggga gatcctgact      1320
     tcaacgtcgg ggtcggggat cgacacaatc gaagcattcg atctgtggtc gattccgttc      1380
     aactcgctgt gcgccttgaa tccagatcaa caccacgaat cgcttggacg ctgcaactca      1440
     attcagctgc gtgccaagaa tctggtggca tcaacggatc cgtttggaca cagcgcttgc      1500
     acacacagtc agcaattcaa cgaggccgtc gtcgctccgg aacaacgcgt cgacctggcc      1560
     gtctcaagtc caatctacga cgatcaacct gcggagcctg tcgacagtgt tcccggaccc      1620
     ggtcatcgtc agtcgccgac atcgagcgac gtcatcaagc ttaccgacag cagttcctgc      1680
     gccaacgccg gccgtctgga tgtcctgcga tcatttcgga agctgtcaac aaagttcaac      1740
     catcgcattt ctccgacggc tgcaagaggt ccccagaatc ttgccgtagg ggggaaagcg      1800
     gcggtcacaa gcatcgtctg gttcaagccg tcaagcgtcg ttcgcggacc acacctgtct      1860
     tggacgccac gtgaagacaa gatttggcca caaccagatg ccggtcacat gaaggtttta      1920
     catccctcaa acctcttaaa gagggaga                                         1948
//
ID   Gypsy-51_CQ-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   AAWU01036160;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_CQ_;
KW   Gypsy-51_CQ-I; Gypsy-51_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-133
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 482-482 (2011).
XX
DR   Genome; AAWU01036160; Positions   10745   10613.
XX
SQ   Sequence 133 BP; 45 A; 36 C; 21 G; 31 T; 0 other;
     tgtagtaggc catgcctaca acagccccag aatctcactc aaatcctgac agtctacaaa        60
     gtcagacgca attcaataaa tgctctagtc tagcaacgaa actgtctttc attgcctagc       120
     aatagacgta aca                                                          133
//
ID   Gypsy-51_DEl-I repbase;    DNA;    INV; 5476 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_DEl-I.
XX
NM   Gypsy-51_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5476
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 493-493 (2012).
XX
RN   [2]
RP   1-5476
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           734..1528
FT                 /product="Gypsy-51_DEl-I_1p"
FT                 /note="gag."
FT                 /translation="MERVEEGATAYSVRNSDIPRAIAGLLSGRAEGWYRAY
FT                 QMHAVPWETFKREFLEFFLPPRYYQRLEDAIRARHQQGGEPFKFYVVELRL
FT                 MMQRANYSFDQELERIYENLLPEYQLFIRRHEFSSLEGLTQLATAFEIARD
FT                 RDPVRQAALVPSASGSYTTRSSPPPGPRRREPIRPATTPFGTPSPAISNRM
FT                 ISQEAETPVDVARACNRCAEVGHFVRECQNPPVLYCWDCGKRGVRTIDCCR
FT                 QSGNSRGPRTHREQAATHPALPHH"
FT   CDS           1447..5160
FT                 /product="Gypsy-51_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LLPPVGKQPGSSHTQGAGGDPPSAPPPLDPPLRLTGG
FT                 RIVATVSIEGQLFSATIDTGASRSFVSEAVANRLDSGRNIKEVRTQISLAD
FT                 GSPKEVTKALHAQVRLGQQHVRMTLLVLPTILDEVILGIDFLCSIRATLIC
FT                 GQVCLQLAPPATRRADPGPAIRAAPTAAIAHLSDPPAPTQRTTRTNEGATT
FT                 GPIPAPRHHITSTAGQNPAPVPSEHSPPPILPGTTTEITTADVTIKENQYN
FT                 LQPLPDAAVAKKRNPFRKYLASQERLASTTTGTSPDDPDTPQSSPGSPQGI
FT                 GKYQLPAQPDTENAQRRNPFRKHCPHGHLATVAESPPESLVSEEPLDAETL
FT                 RFLQEELRHFDHLQGTTDIAEHTITLREDKPLKQRYYPKNPAMQRIINEQV
FT                 DELLQDGRIEPSRSPHSAPLVLVRKKTGDMRMCVDYRQLNAHSIPDAYPLP
FT                 RINHILERLRNARYISTLDLKNGYWQIPMAEASRECTAFTVPGRGLFHWKV
FT                 MPFGLHSAPATFQRALDSVIGPDMEPHAFAYLDDIIVIGATWEDHARNLRE
FT                 VFRRLREANLRLNRGKCKFFQRRLVYLGHLISEEGIRTDPDKIAAIQGLHP
FT                 PTNVKELRRHLGIASWYRRFVQDFASLVQPMSRLLRKGVKWTWEEPQQQAF
FT                 DSLKARLTSAPVLACPNFEYKFQLQTDASDKGLGAVLTQNIEGDERVIAYV
FT                 SRRLERAEENYSATEKECLAIVWATRKLRCYLEGYKFDVITDHLALKWLNS
FT                 INNPTGRIARWALELQQYQFDVLYRKGKYNVVADALSRQPLGRLQLLAELK
FT                 CHCKWVRKMQEQVQRRPEKFPDYSLDNGQLYRHIGHPTGVRVGNPWKLCVP
FT                 REQRQRVLGECHDHPSAGHLGIRKTLRRIAQRYFWPGLHRDVVRYVTSCLT
FT                 CQQYKVSQRKPAGKMLTRQPTEPFALVGADFVGPLPRTRRGNTMLLVFIDI
FT                 FSKWVELIPLKKATAAQLEFGFRERILSRFGAPRRLICDNGTQFTSRSFRA
FT                 FCRNNGIQLEYTAPYSPQQNPTERANRTIKTMIAQYVNQDHRTWDQLLPEI
FT                 SLAINTSISDSTGFSPAYLVQGREPRLPGALFDAVAPDLHASPLDPTERAK
FT                 RLQEAFRTALETNQIASQEQSRHYNLRRREWRPQIGSQVLVRLHHLSKASE
FT                 GFNAKLAPKYAGPFKVVKFLSSNVVRLQQVDGRKRRTAGIGDLKEYHPREE
FT                 QHDDSTEDPRRSDSQPTLDDVPDTTLPG"
XX
SQ   Sequence 5476 BP; 1351 A; 1743 C; 1430 G; 951 T; 1 other;
     gtttggcgcc cgagcaggga cgacccagga gctaggtatt tttttttttg gtatcaaccg        60
     catggcttaa agacccatgt ccagccgtga gattttgttt tgattaggag cacccaagat       120
     ttaaaagcct agacaaagag taaataggga aatcagtact gccacttacg acaacgccaa       180
     tcgactccgc aactgcgccg cccaccacga gcatcccacg acccagacgc cgccccgagc       240
     gcttacccag cccgctcaca ccaggagcac cggaggacga gaagaaaaac cagcttcgtc       300
     aaccgccggc ttccgcctca kccgcgaccc aagccatggg ggtcaggtga tttctaccgg       360
     cgaaaggacg aactccaagc tctactcaag gagttcggcc tgaacaccca cggccacggc       420
     ccgcatcgtt catcggaggg tccaaccaca gcccggcgct ccgggaacgc ttcgccgcat       480
     tggaggccat ctaccctgag gctcctacac caaaggtagt gaccaaccgg tccacctcac       540
     cgatgcccgg cgcagggggc acccttctct tcgtgccgtc cccagaacat cgtcacacga       600
     gcccaggacg cggagtccaa ggctccaacc ccgcggcccg atcgccaccc cagcatatgt       660
     cagcagccgc gttcgccgaa aagcttcggg atggggcgtc cttttcgatg gacaaaccga       720
     ccccctgcac ttcatggaac gagtcgagga aggcgctaca gcatacagcg tacggaacag       780
     cgacatccca cgggccatcg ctggcttgct atcaggccgc gccgaaggct ggtaccgagc       840
     ctaccagatg cacgccgtgc cctgggaaac tttcaagcgg gagttcttgg agtttttcct       900
     cccgccacgg tattatcagc gcctggagga tgcgatcagg gcccgccacc agcaaggcgg       960
     cgagcctttc aagttctatg tggtagaact acgcctgatg atgcaacggg cgaactactc      1020
     gttcgaccag gagctcgaaa ggatctacga gaacctgctg ccggagtatc aactcttcat      1080
     aaggcgccat gaattctcct cactggaagg gttgacgcaa ctagccaccg ctttcgaaat      1140
     cgctcgggac cgagacccag taagacaagc agcactagtc ccatccgcca gtggtagcta      1200
     cactacgagg agcagccctc cgcccggccc tcgccgacga gagcccatac gaccagcgac      1260
     gacgcctttc ggcacaccga gtccagcgat atcaaaccgg atgatctccc aggaggcgga      1320
     aacacccgtc gacgtggccc gagcctgcaa tcgctgcgcg gaggtgggac acttcgtccg      1380
     ggaatgccag aacccaccag tcctatactg ctgggactgc gggaaacgtg gtgtccgcac      1440
     cattgactgc tgccgccagt cgggaaacag ccggggtcct cgcacacaca gggagcaggc      1500
     ggcgacccac ccagcgctcc cccaccatta gatccacctc tccgtttgac gggaggccgg      1560
     atcgtcgcca cggtttccat cgagggacaa ctcttctcgg caacaatcga cacgggagcc      1620
     tccagaagct ttgtcagcga agcggtcgcc aaccgactcg attcgggtcg aaacatcaaa      1680
     gaggttcgca cccaaatatc cctggcggac ggatccccga aggaagtcac caaggccctg      1740
     cacgcacaag tgcgcctagg ccaacaacat gtccgcatga ccctcctggt cctgccaacg      1800
     atattggacg aggtgatcct cgggattgac ttcctctgca gcatccgggc aaccctaatc      1860
     tgcggtcaag tgtgcctcca gctagccccg cctgccacac gaagagccga cccaggccca      1920
     gccatccgag cggcgcccac agcggcgatc gcccaccttt cggacccacc ggctcctaca      1980
     cagcggacaa caaggaccaa cgagggggcc acaacgggtc ccatacccgc cccaaggcat      2040
     cacatcacgt cgaccgcggg ccagaaccca gccccagttc catcggagca ctcgccacca      2100
     ccgatcctcc ccggcactac cacggaaata acaacggccg atgtcaccat caaggaaaac      2160
     cagtacaacc tccagccgct accggatgcc gccgtggcca agaaaaggaa cccttttcgg      2220
     aagtatctcg cgagtcagga acgcttagcc agcacaacga caggaacgtc ccccgacgac      2280
     ccggatacgc cacaatcttc cccgggaagc ccgcagggaa tcgggaagta ccagctaccc      2340
     gcccaaccgg acacagagaa cgctcagagg cgcaatccgt tccggaagca ttgccctcac      2400
     ggacacctgg ccacagtcgc ggaatccccg ccggaatcgc tagtgtctga agaacctctc      2460
     gacgcggaaa ccctccggtt ccttcaagag gagcttaggc acttcgacca tctgcaagga      2520
     acaacggata tagccgagca caccatcact cttcgggaag ataaaccgct gaaacagcgg      2580
     tattatccca agaacccggc catgcagcgt atcatcaacg agcaggtgga cgaactgctg      2640
     caggacggac gaatcgaacc ctctcgaagc ccgcacagcg caccgctggt gctggtccga      2700
     aagaagacag gggacatgcg gatgtgcgtt gactatcgtc aactcaacgc acactccata      2760
     cccgacgcgt acccgcttcc gcgcatcaac catatcctgg aacgtctacg gaacgcccgg      2820
     tacatctcca cgttggacct caaaaacggg tactggcaga ttcccatggc ggaagccagt      2880
     cgagaatgca ccgcattcac tgtccccgga cgtggactct tccactggaa agtcatgccg      2940
     tttggacttc actccgcccc agcgactttc caacgagccc tggacagcgt catcggcccc      3000
     gatatggagc cccacgcctt cgcttattta gacgacatca tcgtcatcgg ggcaacgtgg      3060
     gaggaccatg cgcgcaatct gagggaagtc ttccggcgcc ttcgagaagc gaatctgcgc      3120
     ttaaatcggg gtaagtgcaa gttcttccaa agaagattag tgtatttggg tcacctgatc      3180
     agcgaggaag gcatcaggac agaccccgac aaaatagcgg caatccaggg actacatccc      3240
     ccgactaacg tcaaggaact tcgccgccat ctcggaatcg catcttggta cagacgtttt      3300
     gtccaagact ttgcctccct agtacaacca atgtcgcgtc ttctgaggaa gggagtaaag      3360
     tggacctggg aagaacccca acagcaggca ttcgattcac ttaaggcgcg actgacgtcc      3420
     gccccggtat tggcctgccc aaattttgag tataagttcc aacttcagac ggacgccagc      3480
     gacaaaggac tcggcgcggt cctcacccag aacattgagg gcgacgaacg agtaatcgcc      3540
     tacgtgagcc gtcgactcga gcgggcagag gagaactact cggccacgga aaaggagtgc      3600
     ctcgccattg tgtgggccac ccgaaagcta cgttgctacc tggagggtta taagttcgac      3660
     gtgatcacag atcacctggc cctcaaatgg ttgaattcca ttaacaatcc cacgggacgg      3720
     atagcccggt gggcattgga acttcaacag taccagttcg acgtacttta ccggaagggt      3780
     aaatacaacg tggtcgccga cgccctctcc cggcaaccac tcggaagact ccagttactc      3840
     gcggaactta agtgccactg caaatgggta cgaaagatgc aggagcaggt ccaaagacgt      3900
     cccgagaaat ttccggacta ctccctggat aatggacagc tctatagaca catagggcat      3960
     cccacaggcg tcagggtagg caacccctgg aagctgtgcg taccccgaga acagcgtcaa      4020
     cgcgtactag gagaatgcca cgaccatccc tccgccgggc acctgggcat ccggaagacg      4080
     ctcaggagga tcgcccagcg ttacttctgg cctggacttc atcgggacgt ggtacggtat      4140
     gtcactagct gtctgacctg ccaacagtac aaggttagcc agcgtaaacc agccggcaag      4200
     atgctcactc gccaacctac ggagccgttc gcgctcgtcg gagccgactt cgttggaccc      4260
     cttccccgga cccgacgcgg aaacaccatg ctcctggttt tcatcgatat attctccaag      4320
     tgggtagagc tcatcccatt gaagaaggcc actgccgccc aactggagtt cggattccga      4380
     gaaaggatcc tctctcgctt tggagccccc aggaggttga tttgcgacaa cggcacgcaa      4440
     ttcaccagcc gaagcttccg ggcgttctgc cggaacaacg gtattcaact ggaatacacc      4500
     gctccgtact ccccccagca aaatccgacg gagcgcgcca accgtactat caagacaatg      4560
     atagcacaat atgtgaatca ggatcatcgg acatgggacc aactactgcc cgagatctcc      4620
     ctcgccataa acaccagcat ctcagatagc acggggttta gtccggctta tctagtacaa      4680
     ggtcgggagc ctaggttgcc aggtgccctc ttcgatgcgg tcgcacccga cttacatgcc      4740
     tcgccattgg acccaacgga acgagccaaa aggcttcagg aagcgttccg caccgccctg      4800
     gaaaccaatc agatagcttc tcaggaacaa agtcgacact acaacctgag gcgacgcgag      4860
     tggcgacccc aaataggttc acaggtgcta gtccgtcttc accatctgtc caaggccagc      4920
     gagggcttta acgcaaaact tgcaccgaag tacgcgggtc cgtttaaggt ggtgaaattt      4980
     ctatcatcaa atgtcgtgcg gctacagcag gtagacggcc ggaagaggcg tacagctggc      5040
     ataggcgatc tgaaggaata tcacccgcgc gaagaacaac acgacgactc tacagaagac      5100
     cccaggagga gcgattctca acccacactt gatgacgtac ccgatacaac tctaccaggg      5160
     tagacgtaag cgacgaagct agtaacaagt tacctttaag cgggaaaatt gtatcgaata      5220
     ggctagttaa agatagtttg atcttcgcac tcaggctagg caagttaggt aacgtagtac      5280
     taggctaact atttggacac cccggaccgc cgtctgcccc cgctctcgtc gcatccatcc      5340
     aggctcagga tcgccggcgc gtgcgatatc ttcgccaaat cgacggcgct aaatttcgcg      5400
     tcaacgtgac cgctcgggga gaagtcatcg tggccctccg cccacttctt taaccacccc      5460
     gaagtaaagg gggggg                                                      5476
//
ID   Gypsy-51_DEl-LTR repbase;    DNA;    INV; 1454 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_DEl-I;
KW   Gypsy-51_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1454
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3093-3093 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus. 4-bp TSDs.
XX
SQ   Sequence 1454 BP; 363 A; 375 C; 375 G; 341 T; 0 other;
     tgtgaggacg ctcaaggcgc ctcacatttt cccactcaaa caaacccagt atctcagcca        60
     ttgaaggcag tattatgtta aattctcatt acatgttaag tttccaaata tagatttaag       120
     cttaaaacct aagttatcct agtttcaaac ataagcgcgc gaggttgcca gtgttgatca       180
     gcaagatcgg tcagctggcc agtcgggtcg aaagtcgata gtatcgataa gttatcgcaa       240
     tcacccgtga gcatgcgagc gtgctgttaa gctcgagcgt gctgttaaag gcaagcttag       300
     tgcgatggcg cgagcgtgct gttaagcgcg agcgtgctgt taaagttatc gcaatcaccc       360
     gtgaacatgc aagcgtgctg ttaaaggcaa gcttagcgcg gatggcgcga acgtgctgtt       420
     aagcgcgagc gtgctgttaa aggcaagctt agtgctgata acgcgagcgt gctgtaaagc       480
     gcaaaaacaa gcgtgtcgac gtggcacagc gatccgctga gatcgctctc tttcttttgc       540
     ggcagccgaa caggacggac caccagtaaa actcagcgga aggaaccagc agacggcgac       600
     atcagatcaa gctcaggagt aagataagca acagagatca gaggcaggca gtactgagtg       660
     cgaaggttag ggagaataca agaataaata aaaggaagat aaattgtgaa actaaaaacc       720
     ccaagtgctg gtagtaaaat ttagtgaact tcgcggagtg ctttttcggg ttggccaggt       780
     tgccgcattg cgtttccgag gtctgttttc tctacgcaac gcggacacca aagctaccca       840
     cgtgctactc caggtcgggc aagttctcgt gttgcgtctc cgaggtctgt tttctctacg       900
     caatacgaac gcttaccaga ccggggaaaa gcgcgggaaa ctaccgccgg tcttttctac       960
     tcacgtccag gttagggaca ggctagtaaa atttagtgaa tttcaccgag gggctttttc      1020
     gggccagtga ggcttctgag ttgcgtctcc gaggtttgtt ttctctacac aacgcggaag      1080
     ccaaagctgc ccgcgtgccc atccacgtcg gacaagctcc catattttcg ttttccgagg      1140
     tttactctgc gcaatccgaa cacttgccgg acgggcaaat ctccgccgat ttccccgcgc      1200
     cctccccttc gctccgcgca gggcccagtc gaaatccccg ccagttaaat ctacgccggt      1260
     cccgttttcg tgtggcgttt ccgaggtctg ttttctctac gcaacacgga cgacgaggcc      1320
     ggccacgtga tcccgataac aaaatcccgg cggcaactcc cagtcccgtt tcgtctcctg      1380
     tgtttctaca aatttaactg tagaggactc tggccggact gaagcctatc ccagcctatg      1440
     aaaaagtcct taca                                                        1454
//
ID   Gypsy-51_DWil-I repbase;    DNA;    INV; 4759 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_DWil_;
KW   Gypsy-51_DWil-LTR; Gypsy-51_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4759
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1871-1871 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2343-2813] - Reverse transcriptase
CC   Positions [3873-4349] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..1689
FT                 /product="Gypsy-51_DWil-I_1p"
FT                 /translation="MAQLNDFQCISEMLRLEKRENIVLLHKFIFEKEGDRN
FT                 NRKRVREFEGYEFAESDNLYNDKVNYIAENLSDMDLAVICNLLRLPHNKND
FT                 LTKHIFCNLKKNSLLKDADFQTENNDESEDEESQNDEVCENVSVRSENSCS
FT                 VQNTSSVRNPSSFSEVPRFALNFRDIEDSIRLFSGEDNLSIEVWVQDFEDM
FT                 ATVMCWNELQKFIFAKRSLKGLAKMFANSERNVTTWFKLKVALLAEFKSTT
FT                 NSAQLHKSMSDRKIKKNESLQEYFLCMKEMSSRGNIEDSSLIQYVIDGIDD
FT                 TVNNKSILYGSNNINEFKQKLKIFEVMREKSKNENKYNNGVGKQYPKNDDK
FT                 FQAVQKKSANKELKCFNCGAKGHTSVNCDYKNKGRKCFQCNNFGHIAKDCP
FT                 TSSAKNDKANTCKITS"
FT   CDS           2394..4754
FT                 /product="Gypsy-51_DWil-I_2p"
FT                 /translation="MHRLQTINKVIIRDHFPLPLIEDQLDRLQNARIFSSI
FT                 DLKNGFFHVGIEEGSRKYTSFVTHNGQFQFLRVPFGLSNSPSVFQRHVNAI
FT                 FRDLTRKGVAIPYVDDIIIPAKTEDEAVANLKEVLKQCEEYGLVINFKKCQ
FT                 FLKTKIEYLGHVIENQSISPSTSKTQAVSSFPIPSNLKQLQSFLGLVGYFR
FT                 KFILNFSLIAKPLTDMTKHDALIIFGEKELAAFNKLKKLITEKPVLKIFHQ
FT                 LHETELHTDASIDGFGAVLLQKSPEDMQFHPVYYMSKKTTDAEKKFTSYEL
FT                 EILAVVEALKKFRVYLLGLRFKLVTDCNALAKTIQKKDLCTRVARWILQMQ
FT                 EFQYDVEHRAGTRIRHADALSRVPMMMISETSMHSRIKHLQAQDDQLKAII
FT                 DVLADKTNHNNYFLKAGVLHKLISDNELIVVPTSMQRELIKEAHDHGHFSI
FT                 KKTREIIGKEYFIPNLEEKIKRCISCCIRCIVTNRKQGKQEGELHPLYKDE
FT                 QPLMTYHIDFLGPLESTHKQYKHILAVIDSFTKFCWLYPTKSTSTKDAVLR
FT                 LQEQSKVFGNPSQIISDKGSAFSSEEFDLYCKSEGIKHHLITTGLPRANGQ
FT                 VERLNTTIIAVLSKLSSDDPRKWYKFVNNVQQVINSTFSRSIKTTPFELLT
FT                 GTKMRLKSDIKIKEMIEDEMIQHFNDERDKQRKEAKQHILQIQDENKNRYN
FT                 LRRRPASKYKIGDLVAIKRTQLGPGLKLKPKYLGPYRIIRVKFNDTYDVAK
FT                 DSVFSEGPRQTSTCAEYMKPWVPYDDDDDAFGANEV"
XX
SQ   Sequence 4759 BP; 1762 A; 831 C; 951 G; 1214 T; 1 other;
     cattttgggg gctcaaccta aaaagaatta aacgtgaaag aaaagtgacc cacacatttg        60
     ggctcaactt aaaagaataa aaagtgaaag agaggtgaca cacacaaaag aagtaaaagt       120
     gaaaaagatt taaaagtgta aaagaagtag cccagacata ttgaggcttt acgtgaaaaa       180
     actataagtg aactcaacct aaaaacaaag tataacggaa aattaaaata aagtgtaaaa       240
     aggtgcaaaa ttaaataata cgagtctctc taaaagttta atgaaaatgg tgaataatgc       300
     taaaagttca ataaaagtcg aatcggtata aaagaaaaca attttatttc acaatttctt       360
     ggaaattgca tcagccaaaa agagacgcca cattttaccg cgtttttacc gcgtcggtta       420
     cccatacaca cacagcaacg aacaaaaacg aaacgaaaaa tggcacagtt aaatgacttt       480
     cagtgtatta gtgagatgct tcggctggaa aagagagaga atatcgttct gttgcacaag       540
     tttatttttg aaaaagaagg agatagaaat aatagaaaac gggtgcgcga gttcgagggc       600
     tatgagtttg ctgagtcgga caatttgtat aatgataaag ttaattatat tgctgaaaat       660
     ctgtcagata tggatctggc tgtaatttgt aatttgcttc gattgcctca caataaaaac       720
     gatttaacga aacacatatt ttgcaattta aaaaagaatt ctttgctcaa agatgccgat       780
     tttcaaacgg aaaataacga cgaaagtgaa gacgaagagt cgcaaaacga cgaagtgtgt       840
     gaaaatgtaa gcgtgcgaag cgagaattca tgcagtgtgc aaaatacaag cagtgtgcga       900
     aatccaagca gtttttccga agttccgagg ttcgctttaa actttcgcga tatagaagac       960
     tctatccgtt tgtttagtgg cgaagataat ctatctatcg aagtatgggt ccaagatttt      1020
     gaagatatgg caactgttat gtgttggaac gagttacaaa aatttatttt tgccaaacga      1080
     tcgttaaaag gcctagcaaa aatgtttgct aatagtgagc gaaatgtaac gacctggttt      1140
     aaactaaaag tcgcacttct tgctgaattt aaatcaacaa caaatagcgc acagttacat      1200
     aagtcaatgt ctgatagaaa aataaagaaa aacgaaagtc tgcaggagta ttttttgtgc      1260
     atgaaagaaa tgtcatctcg cggaaatatt gaagactctt cgctgataca atatgtgatc      1320
     gatggcatag acgatacggt gaataacaaa tcaattttat acgggtctaa taatataaat      1380
     gaattcaagc agaagctaaa aatttttgaa gttatgcgcg agaaatcgaa aaatgaaaac      1440
     aaatataaca atggtgttgg caagcagtat ccgaaaaacg acgataagtt tcaagcagtg      1500
     caaaagaaaa gtgcaaacaa agaactcaaa tgttttaatt gcggcgccaa gggccataca      1560
     tcagttaatt gcgattataa aaataagggc agaaaatgtt ttcagtgtaa taatttcgga      1620
     catattgcca aagattgccc aacaagcagt gccaaaaatg ataaagccaa tacatgcaaa      1680
     attacgtcaw ctcaaaattt tatgtctatt ccagttaaaa tcgataatat taattataac      1740
     gcgttcttag acaccggtag caagtacgat ttaatatctg aagcaatgct gaaaaacatg      1800
     aataatccaa tgttgagtga ttctaacgtt tatttaatcg gtttcggaaa gaaaaaagac      1860
     acagacaaga tcaaagcatc gggttcattt aaatatacgg tcgatattaa cggtgagaaa      1920
     tactgtttga catttctctc agtggagcaa caatttatgg atgtggaaat tgttcttggc      1980
     gaggatttct gtaagcaagc ggaggttaca atcagctaca aaggtctaaa ggtgacaaaa      2040
     acccaatgtt tagaatccga agtaagttcc tttctgaaaa tcaatgtgga tgactccagt      2100
     gaacagcagg ccgacataga tccagcagca agtaaaaggg ctaaagaagc agttcaaaat      2160
     ttggtacaga attatcatcc ggtaagcgaa aagtcaacaa atattcaaat gcgattagtt      2220
     ctaaatgatg ataaaccgat atactcacga cctcgacgat tctcatatgc agagagatgc      2280
     atcattgaca atcaaaccga tcaatggctg aaggatggca taattgaaat atcagagtct      2340
     gagtatacaa gcccagtcgt gcttgtgaaa aaacgggacg gatcaaatcg gttatgcatc      2400
     gattacagac gattaataaa gtaatcatta gagatcattt tccacttccc ttaatagaag      2460
     atcagttaga caggcttcaa aatgcacgta ttttcagttc catagattta aaaaatggtt      2520
     tttttcatgt tggcattgaa gaagggagcc gcaagtatac ttctttcgta acacataatg      2580
     gacaattcca gtttcttcga gttccatttg gtctttcgaa ctctcccagc gtctttcaac      2640
     ggcatgtcaa tgctatattc agagatctaa ccaggaaagg agtagccata ccatatgttg      2700
     acgatataat aataccagca aaaactgaag acgaagctgt agccaattta aaagaagtac      2760
     tcaaacaatg cgaagaatat gggcttgtga ttaatttcaa aaaatgtcag ttccttaaaa      2820
     cgaaaattga gtatttagga cacgtaattg agaaccaaag tataagtcca tccacatcga      2880
     aaacgcaagc cgtgtcatcg tttcctattc cgtctaatct aaaacaatta cagagtttct      2940
     tgggattagt tggatatttt cgaaagttta tattaaattt ttctctgatt gcaaagcctc      3000
     taacggatat gacaaaacat gatgcattga ttatttttgg tgagaaagag ctagctgcgt      3060
     ttaacaaatt aaagaagctt attacagaga agccagtttt gaaaattttt catcagctac      3120
     acgaaacgga gcttcatacg gacgcctcaa tcgacggatt tggcgcagtc cttctccaga      3180
     agtcgccaga agacatgcag tttcatccag tgtattacat gagcaagaaa acgacagatg      3240
     ccgaaaagaa gttcaccagt tacgagttag aaatcttagc tgttgtagaa gcattaaaga      3300
     aatttcgagt ttatttacta ggactacgct tcaaacttgt tacagattgc aatgctctag      3360
     ctaaaactat tcagaaaaag gatctgtgca cacgagtagc tcgttggatt ctccaaatgc      3420
     aagaatttca atatgacgtc gaacacagag cgggcactcg aattcgccat gctgatgcac      3480
     tcagtcgtgt accaatgatg atgatcagcg aaaccagtat gcatagcaga ataaagcatc      3540
     tgcaagctca ggacgaccag ctgaaggcta ttatagacgt attggcagat aagacgaatc      3600
     acaataacta ttttttaaag gctggagttc tgcacaaact tatctcggac aacgaactta      3660
     ttgtcgtacc aactagtatg caacgagaac taataaaaga ggcccacgat catggtcatt      3720
     tttccatcaa gaagacacga gagatcattg gaaaagaata tttcataccg aatctggaag      3780
     agaaaataaa gagatgtata agctgttgca taagatgtat cgtgactaac cgcaagcaag      3840
     gaaaacaaga aggagagctt catccattat acaaagatga acaaccgcta atgacctacc      3900
     atatcgattt tttaggacct ctggaatcaa cgcataaaca gtataaacat atcctggcag      3960
     tcatcgatag tttcaccaag ttttgttggc tgtacccaac aaagtcgact tctacaaaag      4020
     atgcagtttt acgactacag gagcagagca aggtttttgg caatccatcc caaataatat      4080
     cggacaaagg atcagctttt tcttcggagg aatttgactt gtactgcaaa agcgaaggca      4140
     taaaacatca tctcatcacg acgggacttc ctcgagcgaa cggccaagta gagaggctaa      4200
     atactacaat catcgcagtc ctttctaaac tctcaagcga cgatccaaga aaatggtaca      4260
     aatttgtaaa taatgtccag caagtcatca attcaacatt tagtagaagt ataaaaacaa      4320
     ctccttttga gctgcttacg ggaacaaaga tgcgattaaa gtctgatatc aaaatcaagg      4380
     aaatgataga agacgaaatg attcaacact ttaatgatga acgagataaa caacgtaaag      4440
     aagcaaagca acatattcta caaattcaag atgaaaacaa aaacaggtac aacttaagac      4500
     gaagaccagc atcgaagtat aagataggcg atttagttgc catcaaaaga acccaacttg      4560
     gtcctgggtt aaagctaaag ccgaaatatc ttggtccata ccggatcata agggtaaaat      4620
     tcaacgacac ctacgacgtg gcaaaagact cagtattcag cgaaggccca aggcagacga      4680
     gcacttgcgc tgagtatatg aaaccatggg taccatacga cgacgacgac gatgcattcg      4740
     gggcgaatga agtgtagga                                                   4759
//
ID   Gypsy-51_DWil-LTR repbase;    DNA;    INV; 333 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_DWil_;
KW   Gypsy-51_DWil-I; Gypsy-51_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-333
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1872-1872 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 333 BP; 132 A; 61 C; 60 G; 80 T; 0 other;
     tgtatttata ttattgtggg aatggtctgg caatcctatt cagccagccc tagttgagtc        60
     agctgactcg aagaagcgga agacaatctg gcaagccggt cagacagaga cgcattaaga       120
     agacgaagtt aaagacgaaa agacgaagtt ttaagacgaa aagccgaaag tgtaagacgt       180
     acacacgacg aaaacgcgaa agacattaaa caattaatta taattatatc tactattaac       240
     taaaaatcaa tacttatctt aacattaaat aaaactaata taaaactata accgggactg       300
     tgtttattcg taatacaata ccccagtccc aca                                    333
//
ID   Gypsy-51_LMi-I repbase;    DNA;    INV; 4090 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4090
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(86..1498,1420..3630,3516..4088)
FT                 /product="Gypsy-51_LMi-I_1p"
FT                 /translation="MPNEDALNTSRLAVRLPPFWPNNPALWFAQVEASFSC
FT                 SGITTDSTKFALVVSQLDHRFAAEVQDVITTPPQTDAYMKLKSELIRRVSA
FT                 SQEERIRQVLTQEDIGDRKPSQYLRHLRSKVDAHTVPDSLLRTLWSSRMPA
FT                 QVKPIIASQTEMPLDDLAALADRIQDAIVPTSCSDSAITCNSASTETNPDY
FT                 DRLSKKVSALEEQLNNSLASRIEALSNQLSELLADHSTKNRYRRRSRSRST
FT                 HNGPRHNDVQATNICWYHHRFGNQAHKCNPPCDYGNSKHQAEVGAPTGVST
FT                 RLFLTDRKSGRKFLIDTGSDLSILPRDKTYKYRPTTTFRLTAANNSVIQTY
FT                 GTKHMELDLGLRRAIVWNFVIADVAEPIIGADLLAHYHLLPDTANTCLRDA
FT                 VTGLSATGFRRHAAGCDVKLIQTADGEFTKLLNQFPALTRPPGAPQQVCHD
FT                 TIHYINTTAGPPFRVNLDDWPLTSTPYYSLHQYYSRPPVSCKPRRLAPDKY
FT                 AIAKAEFDXMLAEGIIRPSSSAWSSALHLVPKKNGAWRPCGDYRALNARTI
FT                 PDRYPVPHLKDYNHALSGKRVFSILDCAKAYTQIPMAEKDIPKTAIITPFG
FT                 LFESLFMTFGLRNAAQTWQRFIDSVLRGLPQCFAYLDDILVFSETLETHQQ
FT                 HLTQVFERLAAHGIVLNVEKCVFGQPEVTFLGHKISSEGSRPLPEKVQAVL
FT                 NIPRPITAKELRRFLGMLNFYRFHLPHAAEIQEPLTAALTGSKTKGKALLH
FT                 WSQPMIDAFETAKKTLADATLLAHPVKDARLALVVDTSQIAIGAALQQYVN
FT                 ETWQPLAFFSRKLTPTQQKWSAYDRELLAIYTAVKYFRTQLEARMFTIFTD
FT                 HKPLMYAFRQNNDKCSPRQFRQLEYIAQFSTDIQHVSGLTNVVADCLSRVG
FT                 AITETVGFRXLCDAQQTDQELNNLLNNTETGLQLKLIDVPGANAQLYCDTS
FT                 TGKTRPYVPVGLRKSVFHGLHNLCHPGVRATVKLVASRYVWPGLQKDCRQW
FT                 ARACIACQRSKIARHVHAPIGNFPETTERFAHVHLDVVGPLPPSDGHRYLL
FT                 TIIDRLTRWPEAIPVENTSAETLAVAFMSQWVARFGCPLHITTDRGRQFES
FT                 EIFTQMSKFCGANHHFTTSYHPASNGMVERWHRSLKAALMCYETKWTAALP
FT                 LVLLGLRTVHKPDLDASPAELYMARRYASQENLLSQKPHRGTTYTHQMLAR
FT                 PRRVTCRIIYGETLRLPGEFIESKTSSRDNLHPPDVIAQLREHITQIRPQP
FT                 ASRHGIRPSFMHKELSNCSHVMLRRDGIKPALTPPYTGXHRVLARNGKTMD
FT                 ILLNGKKSTVSIDRVKPAFLFEDFCDTTLLAQPPSPSSTHTQQPPASPVAQ
FT                 PPRQTRSGWHVHFPARFLDSIEYSGRRRRSATLRGA"
XX
SQ   Sequence 4090 BP; 1128 A; 1104 C; 916 G; 937 T; 5 other;
     agtcactgat ttcttaacgc taaagagtac agcttcagta acattcagat tcagtggtga        60
     ccccaaacct tctttgagca ctaaaatgcc gaatgaagac gcactcaaca catcaagatt       120
     ggctgtacga cttccgccgt tctggcctaa taatcccgcg ctgtggttcg cgcaagtaga       180
     ggcgagcttc tcatgttctg gaataactac ggactctaca aagtttgcac ttgtggttag       240
     tcaacttgat cacagatttg cggcagaagt tcaagacgtt attacgacgc cgccgcaaac       300
     ggacgcttac atgaaactga agtcggaact catacgccga gtatctgcct cgcaggaaga       360
     gagaatacgg caggtcctga cgcaggaaga cataggcgac cggaaacctt cgcaatattt       420
     acgccactta cgcagtaaag ttgatgcaca cactgttcca gactcgttgc tacgcacatt       480
     atggagcagc aggatgccag cacaagttaa accaataatc gcatctcaaa cagaaatgcc       540
     cttagacgac ttggcggctc ttgctgaccg catacaggac gcaattgtac ccacttcctg       600
     ttccgactcg gcaattacgt gcaacagtgc ctctacagaa acgaaccccg attacgacag       660
     gttatcaaag aaagtgtcgg cgttagaaga acagctaaac aatagcttgg caagcagaat       720
     tgaggctttg agcaaccaac ttagtgaact gctcgcagat catagcacta aaaacagata       780
     ccgacgacga tcacggagcc gttccacaca caacggtccc cgtcacaacg atgtgcaagc       840
     aactaatata tgctggtatc atcaccgatt tggaaaccaa gctcacaagt gcaacccgcc       900
     atgcgattac ggtaatagca agcatcaagc agaagtcggt gcgcctactg gtgtctctac       960
     ccgcttgttc ttgacagatc gcaagtcagg tcgtaaattt ttaatcgata caggctctga      1020
     cttaagtatt ctgccacggg ataaaactta caagtaccgc ccgaccacta ccttccgact      1080
     gacggcggcc aacaattccg tgattcaaac atacggcaca aaacacatgg aactagacct      1140
     tgggctacgc cgtgcaatag tgtggaattt tgtcatagcc gatgttgcag aaccaataat      1200
     cggagcggat ctattggccc attaccatct gttgccggac accgccaaca cctgcttacg      1260
     ggatgcagtc accgggctat ctgccaccgg attccgacgt cacgcggccg gctgtgacgt      1320
     caagcttatc caaacagcag acggagagtt caccaagcta ctcaaccagt ttccagcact      1380
     tacaaggcct ccaggggccc cacagcaggt atgtcatgat actattcatt acatcaatac      1440
     tacagcaggc cccccgtttc gtgtaaacct cgacgattgg cccctgacaa gtacgccata      1500
     gcaaaggctg agtttgatwc tatgctggct gaaggtatca tacgtccgtc cagtagtgcc      1560
     tggtcgtcag ctctgcactt agtacccaag aaaaatggtg catggcggcc atgtggggac      1620
     tatcgtgctt taaatgccag aaccattccg gatcgatatc cagtgccaca cttgaaggat      1680
     tacaatcatg ccttaagtgg gaaacgagtg tttagtatac ttgactgcgc aaaagcttat      1740
     acacagattc ccatggccga gaaggacatt ccgaaaactg caataattac gccttttgga      1800
     ttatttgaaa gtttattcat gacctttggt ctgcgaaatg cggcacagac atggcaacgc      1860
     ttcatagatt cggtgttacg aggcttacca cagtgttttg cttatctaga cgatatcctt      1920
     gttttttcgg aaacacttga aacacatcag cagcacctta ctcaggtctt tgaacgcctc      1980
     gctgctcatg gtatcgtcct gaatgtggaa aagtgtgtgt tcggtcaacc ggaggtaacc      2040
     ttcttgggac ataaaatttc gtcagaggga tcacgcccac tacctgagaa ggtacaggcg      2100
     gtattaaaca ttccacgtcc gattacagca aaagaactac gccgatttct cggtatgctg      2160
     aatttctaca gattccacct cccacatgcw gctgaaatac aagaaccact cacagctgca      2220
     ctaaccggtt ccaagacaaa aggcaaggca ttgttgcact ggtcacaacc gatgatagac      2280
     gctttcgaga ctgccaaaaa gacacttgct gacgctacac ttctggcaca ccctgtaaaa      2340
     gacgcacgtc tggctctggt agtagacact agccagattg caatcggcgc ggcacttcag      2400
     caatatgtaa acgaaacgtg gcaacctctt gcattctttt cgcgcaaact aacgccaacg      2460
     caacaaaagt ggagtgcgta cgatcgcgaa ttgttggcca tctacacagc tgttaaatac      2520
     ttccgcacgc aactcgaagc gaggatgttt acaatattta ctgaccacaa gcctctcatg      2580
     tatgcttttc gtcagaacaa tgacaagtgc tcgccaagac aatttcgtca gcttgagtac      2640
     atagcacaat tttccactga catacagcac gtctcaggac tgactaacgt agtggctgac      2700
     tgcttatctc gagtcggtgc tatcacagag actgttggtt ttcggsagct gtgcgatgcg      2760
     caacagaccg atcaagagct gaataaccta cttaataata cggagaccgg cctacaactc      2820
     aaacttattg atgtgccggg agcgaacgct cagttgtact gcgacacttc cactgggaaa      2880
     acacgcccat atgtgccagt aggactacgc aaaagtgtct tccacggact ccacaacctc      2940
     tgccacccag gcgtcagagc tacagtkaaa cttgtcgcct cccgttacgt ttggccaggt      3000
     ctacaaaaag attgccgcca gtgggcccgc gcatgcatag cttgtcaacg tagtaagatt      3060
     gcacgtcacg tacatgcgcc catcgggaat tttccagaaa ccacagaacg attcgcccat      3120
     gttcatttgg acgtcgtggg acccttaccg ccgtctgacg ggcatcgcta cttattaacg      3180
     attattgatc gattaacacg ttggccagag gcgattccgg ttgaaaatac ctccgcagag      3240
     acattggcgg tcgctttcat gtcacagtgg gtcgcacgat ttggttgccc gttacacatt      3300
     acaacggaca gagggcgcca atttgaatcg gaaatcttca cccagatgag caagttttgc      3360
     ggcgcaaacc accatttcac tacaagttac catccagcaa gcaacgggat ggtggagagg      3420
     tggcatcgct cgctcaaagc agcactaatg tgttatgaga ctaagtggac tgcagccttg      3480
     cccctcgttt tacttggcct gcgaacggta cataagccag acctcgacgc gtcacctgca      3540
     gaattatata tggcgagacg ctacgcctcc caggagaatt tattgagtca aaaacctcat      3600
     cgagggacaa cttacaccca ccagatgtta tagctcaact cagggagcac atcacgcaga      3660
     tcagacctca accagcatcg cgacatggaa tacgcccctc cttcatgcac aaagaattgt      3720
     caaattgctc acatgtcatg ctccgtcgag atggaattaa gccagccctt acacctccat      3780
     atactggacm ccaccgtgtc cttgcacgca acggcaaaac tatggacatt ctgcttaatg      3840
     gtaaaaaaag taccgtctca attgaccgag tgaaaccagc gtttctattt gaagacttct      3900
     gtgatacaac cctgctcgca caaccaccgt cgccttcgtc tacacacacc cagcaacctc      3960
     ctgcctcgcc agtggcacag ccgccacgtc aaacgcggtc gggttggcat gtccactttc      4020
     ctgcaagatt cctcgacagc atcgagtata gtggacgccg acgacgctcc gctactctgc      4080
     ggggggctga                                                             4090
//
ID   Gypsy-51_LMi-LTR repbase;    DNA;    INV; 326 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-326
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 326 BP; 82 A; 60 C; 74 G; 110 T; 0 other;
     tgtggcgaca agtattcaac agacgcgatc agctgattgc agctacgcaa gaagttcgtg        60
     cgcctgccgc ttggggcgct gccttgcgcg cttattcctt gtcgcggaag caacgttcct       120
     tgaaataatt taatttctgt tgtttaatgt atctgtgtcc tttcctcgtc gaagattttc       180
     atttgcattt gagttatgtt tgaaataaag gttttattgc tacatctagg cattgttctt       240
     ctgtaaatgg aggcagatgc attaattata agaagcaatt aaaatatgtt actgtgtact       300
     gggactcgcg taagttacgt aaaaca                                            326
//
ID   Gypsy-51_MSe-I repbase;    DNA;    INV; 4979 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_MSe-LTR; Gypsy-51_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4979
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 928-928 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. There are only 2 full-length
CC   copies of this Gypsy family in the genome.
XX
SQ   Sequence 4979 BP; 1731 A; 835 C; 1019 G; 1393 T; 1 other;
     agtggcgacg agtctgggta agtactcgat ctatcaaatt atgggaagga aagaatagta        60
     cctattgttg tgacgaagat ttaatcaata tcctatcccg agccccttat ttaattcgag       120
     tagtaggttg atcgataacc ggtactaaaa agatgtttag ttcttcgtat tacaatttaa       180
     acttctaaag caatcgagtt aagtattgat ccgggatata attcggatgg caataacaat       240
     aatatacgag atcttcctac ctacgktact atgtcacatt acaatattct gtcgtgtctc       300
     cacgtaacta aaattttgta agtagataca tagctatact taagtttaag tttaaagatt       360
     aagtaggtaa ggttattcat attgttttga agtgttgtta aattaaaaac ctaccttttg       420
     ttacctatca gaaataaaat aaagctataa ccagcctaga aatattaggt actatttgct       480
     aagctttcta gtattacagg gatacgttca ttttgtcttg ttaccatatt gttaaaattt       540
     aaagctcatt tattggcacg aggtaaaagt agtaaactaa ctctgtagtt ggtactaata       600
     agaagttttt ataattgtat acaaaataaa ggctctaagc agcaaactga caccgttagt       660
     tagtgctgat aagaatgcac tgtaaatccg agatattacg aggtgcacta aagctaagtc       720
     tacacggaat aaatagaaaa ctgtaactgt cagttggttc taaaactatt tggatataaa       780
     acgatgcata caaaaaaaaa ataaaaaatg tatatgattt acaacaatga gtagtatttg       840
     gatacgactg gtccagtggt actaataaga agtcattgtt ataggtcgcc ccaaatgtct       900
     caattaccac ctcttgaagc gtttgactgc gaaggcgatg tcgcctccgt aggtctgcgc       960
     tgggaaaaat ggaaacgggg atttgaacta tttctagttg cattaaatgt aactgagcct      1020
     gaaaagaaaa aagctacact actacatgta ggagggttga cactacaaga aatttattac      1080
     aatattccgg acgatgacgg cgatgatgat aagggtgatg atgtgtacga gtcggcagtt      1140
     aagaaactta gcgattactt ttcaccaaaa cagtgtaaaa tttacgaaag acacttattt      1200
     agacttttaa aacaggagcc aggtgaaaag ttcgaaaggt ttcttgtgcg attacgtcac      1260
     caaagcagta aatgtaaatt tgcatctgag gaagataatc ttatcgacca aattgtagag      1320
     aagtgtagtt cgaaagatct taggaaaaag atacttacct ggggtgatga tgtgaatcta      1380
     gataagatta tcgcacaagc gaacgctctt gaggcagtgg acaggcagct tactgatttc      1440
     aattccgagc aacaaaacat aaatataaac aaaatcgaca taaaaaacag ttctcaagct      1500
     gcgtccggct gctcgcgttg cggtagtatg caccataatg cagacagtaa tgtctgtccc      1560
     gccagatcaa agcagtgttt gaaatgcgga tacgtcgggc acttcagaaa ccaatgtaaa      1620
     acccggacaa gcaaaaggaa gaattccagg tctactttta ataaagacct tcataaaaga      1680
     ctgaagttgg gtaaaacaga caatgagaag tttaacaaca ataatacgtc aaaaaccaag      1740
     cccgtttcca caaatataga ctatattttt catatagacg atgacgctcc ccttaaatgc      1800
     aatatagggg gcgtaggagt agacatgatt atagattctg gtagtaaatg caatattttg      1860
     agtgacaaga cctgggaata tttaaaggaa tgtaaagtgc atgtatcaaa ccaaattgct      1920
     aatccggaca aaacatttgt tgcttatggc agcaacacac cgttgaccgt tataggatca      1980
     tttgaggcga ctattcgagt aaaaaatgaa atacaaactg gaaccttcta tgtagtaaag      2040
     ggaggcacgc gagacttatt agggaaagaa actgcgatag ctttaaaagt actaaagctc      2100
     gggttagaag tcaattcggt aagcgtaaac agttttccta aaataaaaga tgttgttctc      2160
     aatatttcta taaacaaaac tatgaaacct attgcccagc cttgccggcg agtacccatc      2220
     cctctagagg aaaaaatcaa taaaaaaatt gatgagcttg ttaagttaga tattattgag      2280
     ccagtaaata atccctcagg ttgggtctcg ccgatagtgc cggtgcttaa gcccgatggt      2340
     gatgtaagag tgtgcgtgga catgcggtgt gctaataaag cgattatcag ggaaaatcat      2400
     ccattgccta caatggatca gttgctccat aaatttaaga gggcacatgt tttttctaag      2460
     ctcgacatta aagacgcttt tcaccaggtc gagattagtg aagattctag agacattacc      2520
     acttttataa ccggccaggg aatatatcga tacaaaaggt taatgttcgg catttcttgc      2580
     gcgccagagc attttcagaa aaattctaga gagggttctc ctcccatgtg aaggtgttgt      2640
     taattttatt gatgacatcg tcgtatatgg cgaggatgat actgaacata atggtagact      2700
     caaacatgta cttaaaatta tcaaagagcg taatattctt ttgaatcaga aaaaatgcgt      2760
     ttttaatgtc aagaccataa aattcttagg gcatcagttg tcagccgatg gtgttaaacc      2820
     tcttgatgct tatataaaag ttgttgaaaa ttttcgagaa ccagcgacca ttgatgaggt      2880
     acaaagtttc cttgggctca taaattacgt aaacaaatgg attcctgaca tggcaactaa      2940
     atcagaacca ctcagaagac tattaactct caaattagga aaaaatgcca atgtaagtca      3000
     atattggggc ccaaaacaaa caaaatcatt tctcgaacta aagaaatcct taagcagcat      3060
     ccatacgctt ggatattatg atcccaagga cgagacttta gtaatggcgg acgctagccc      3120
     ggtagggctg ggagcggtat taattcagtc tgacaatagc gggtcgcgtg taatcgctta      3180
     cggaaataag agcttaacag atgtagaaaa gcgctattgt caaactgaaa aagaagcact      3240
     cgccctagtt tgggcgtgtg gagcatttta aaatgtatct atacggcaaa gcgtcttttg      3300
     acttaatcac agatcacaaa ccgttggagg ttatttttgg tagtagatcg aaaccctgtg      3360
     ctagaattga gcgttgggta ctacgccttc aagcatacaa tttcagagta atatataagc      3420
     cggggaagaa taatatcgca gattgtttat cccggttatg tcctaccaat aacccccaac      3480
     cgtttgaaaa tgaattccac attaatcaaa ttgttcaatt tgcaagacct aatgcagtag      3540
     gaatggatgc aattaccgaa gcgtctatac aagataatga aatacagctt gttaaggaag      3600
     ctctgtcgtc taataactgg gatcctttaa ttaacactta cagagtattt caaacagagc      3660
     tctggacgta cgaaagtctt ttgttaagag ggagtaaaat tatcattccc cttaaattac      3720
     gtcagcaggt attagaagcg gctcacgaag ggcatcctgg tattgttgcg atgaaaacac      3780
     gactacgtac aaaagtatgg tggcctaaaa ttgacgttga tgctgaaaag cttgttaaaa      3840
     gttgcaaagg gtgtactttg gtatctgcgc cgaatcatcc aagaccaatg atgcgtcgtg      3900
     agttgccttc gcaggcttgg atagatgtag caattgattt tttggggccg ttaccgagtg      3960
     gtcattatct tttcgttata gtagattact ttagtcgcta caaggagatc aagcctatga      4020
     aaatcataac atctgctgaa acgatcaaaa cacttaagga gattttctct agactaggta      4080
     tacctgttag tattaccgct gataacggga ggcagtttac cagcgacgaa tttaaatcgt      4140
     tttgctatga actaggaatt aaaattaatt ttacaacacc gtattcccct caacaaaacg      4200
     gcgaagtcga gcgacaaaat cgcgatattt taaaaagact cggataagtc aatgccaaaa      4260
     atcaaattgg tatgaagaat tattattata tcttacgatg tataacagca caccgcacac      4320
     caccaccgga aaaacgccat ccgagttatt tttcggtaga atatttagag ataagatacc      4380
     atgtcttacg gacatagatg ctaatcaatt tacttcagac ttcagggaca aagacaaatt      4440
     aatgaaagaa aagggaaagg aacacgagga cagaaaaagg aaagctgaag aaatagatat      4500
     aggtattggt gagaaagtat acgtaaagaa tatggtgaag gaaaataaac ttactacgaa      4560
     tttcaacccg actccccata ctgttgtaaa ttgtaaagga tctgattaca gcgtaaggaa      4620
     tgacgaaacg ggacaagaat taagaaggaa tatcatccat ctcaaacgtg tggaaggaca      4680
     atggaaagta tgtgaggaca aatctgatca ggagataata agcggatgtg attcaaatag      4740
     tgactaaata cctaccttaa taatttatcg taatcatttt ttattcaaat tgctaaagac      4800
     taatcggtta aaagaaaaag agagaaattc gaattattca ttatgttagt atataagaat      4860
     gttatgtcgt tttgtttata tatacatgta cctattggac tcgcgttaaa taattatttc      4920
     acaggtacct attaataatt tgattaacat agatttgatt ttgttaaaaa agggagaga       4979
//
ID   Gypsy-51_MSe-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-155
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 977-977 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 5-bp TSDs. There are only 2
CC   full-length copies of this Gypsy family in the genome.
XX
SQ   Sequence 155 BP; 40 A; 29 C; 51 G; 35 T; 0 other;
     tgtgacgtat tacaaataaa atatagacgt gggcgcacgg ccgggggtgg agagtagttg        60
     ccatgcggca gtgagactga gaggacgtgc ggccacggct agttgggaac caaaagttgt       120
     tttgtttact taccctgtga caggtagacg tcaca                                  155
//
ID   Gypsy-51_SiCu-I repbase;    DNA;    INV; 8921 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-8921
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5071-5071 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           750..1928
FT                 /product="Gypsy-51_SiCu-I_1p"
FT                 /translation="MGTXTTATTTTASXSTFTTASATTTIMNSVYIPGLSY
FT                 NGSTGPRQFLDQFETLSGINGWSGKTKLNNLILHLTGPALDCFRNDICVKA
FT                 KQAGVTEASYLASSXAPSYDDIAKLLTDSFGGRETEEALERKIEKLQYKQF
FT                 PSAAEYFFSKMRLINRLDASMPDTRKVNLLLKGLPKQLGQQIAMQSPKVPD
FT                 DVLTCLNQLERYTNSMGEKEINVLEQEVKRIFEQVLKEKKGEVNEIKKQDN
FT                 TGNNQEISSQPGTSQARNSQRGNFRGKRGNNNPNNNNKQFAQGYNKRNYKQ
FT                 EERLTISPHITINPQPAPTYYNSYRGGXGRGGGXGRGGRGNXRGRGGRGNY
FT                 RQNYQYSQGNFPQNNSRGNYQQNNFEEKTCYACNMVGHIQRNCPYIEKGN"
FT   CDS           1880..3874
FT                 /product="Gypsy-51_SiCu-I_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="HGRAYSKELSIHRKGKLSMPKASPLGSCKQVTTYSLS
FT                 DLHPDNQAQMLFSIFIINDTPTVTLLDTGASCSXVNKSLVKSRHVSDTISS
FT                 VKGFAGDTLLTETTTIEFHLGNSLHTFEVYIKDDYHRPFLMGNDLFAILKP
FT                 KVHYKNATLTFCDFANIKFPLFFDEETAYNALAKLAKRDQYIYEAERSVQS
FT                 HVRLESNCTLKPLDYTWVPISVIDQEAHQQYMFEPSTKLSDNKLLIAPELY
FT                 IHEINTFTSIPVLNCNNKPIKLLQGMKIGYIQSXEKAYPLQQQQQEQIINN
FT                 XXYKFLNDEQLNSLKINQQLTPQQQGSMRQLLRNYGDCFSFSGNDVGKYSG
FT                 TYPYDKKIAIDTGDAKPIAVRPGRHSFTERAIIDNEIKKLADLGIIRRSNS
FT                 PWSAPIVLVERKEEPNRPIICISYKKLNDLLEPDSFPLPHAKDVFSLIKGA
FT                 RFFTHCDFASGFYQFELDDASIPKTAFSTPDDHWEFLRLPMGLKISPAVYV
FT                 SMIKHIFHDMISKFCFIFIDDVVIFSDTFESHLVKGKLVFDRVRSVNPTVR
FT                 GSKCVFAEQRIKLLGYIVSPDGISVDPAKVEAVKNIPIPTTPRLIKSFIGL
FT                 VGFYRRRIKDFSKIAKPLTDLTKQDVPFEWTPACDAAFNTLKLKLQQAPIL
FT                 EAFDTSKTPEIHADAS"
FT   CDS           4102..5667
FT                 /product="Gypsy-51_SiCu-I_3p"
FT                 /note="ribonuclease H, and integrase."
FT                 /translation="VPRSARLCRWITMLADVDFEIRYTKGNAMHVDCLSRL
FT                 INVDPKYTKEGSVTVEELKNNKDNFALSIEVFDLRKELHRXILEDPFYNSV
FT                 YLXTNEQGNERLGKYAIINNLLYYIHDKTPKLVIPKKFIPYILHTYHNIPS
FT                 SGHXGVLRTYNKIALKYYWQNMYTDCKRYIESCIQCAKRNPFNQAPAGLTI
FT                 PHELPPPFQKIYIDYLGPLAASTPGKFCYIAVAVDXGTRFLIAKPVRLANA
FT                 KSLVDFVVNEIVLVHGCPKIIVFDNASINKSTLTQETLKALXVAPLYTTAY
FT                 SHSNAVVGRYMRTIEEVLSHYVSSHTRDWPEFLKAAVFAINTSEHSAMKHS
FT                 PFFLTYARHPLFPQDVDFPIERLQDSSFLQQVTAARNEARCNLLKAQDKSS
FT                 IHRNLHRKDIMFSPGDLCMVAFPNLTEQQASRKLSAKMNGPFRVLDQVAPN
FT                 TSILQXNNPNAKCIRVHVERMRKFSERPLSLHFSAALPPSHINPDSSPNXS
FT                 NPLPXVQENVITRVGRISRPPLRLNL"
FT   CDS           5689..7863
FT                 /product="Gypsy-51_SiCu-I_4p"
FT                 /translation="MRFLILFSLCWCLGQCELLPPQQYRIRSSSGLYLKPA
FT                 TLQPVIYSQFTTLLFNHSFDIQPKSVYFNDKTLNYCARFVNGSNTDKVTCN
FT                 LFDGIVTHIKQLEASTDNILFRMTGHTSGQYKPRYLLNRKKRQAILGALAA
FT                 FGGYKIYNYFSGESDSEAVYGQLSQGLSQVQKELVSEGRNVVNLARQIDNK
FT                 MDAVIHSFNQMMEAEQHNMVTHLKALSIGSVRQLFIQSNVIQXVTRLADAV
FT                 LYQSVLQDCRNRKLSISLMSQQVLKMDLQRLQDKLDKQEFELAIPITAISL
FT                 YFXFPLVTCRINGETKFISIIMDIPIKRKGDKFKLYQAVSIPFNKDNETCR
FT                 LLNDYHTVVMRNKEPFILEGSQAHKCNFDSELCRFEEYGADLSKSAICIKA
FT                 MIKGKPVNEIRKICPFECHPNNHEIVVTELDNMHFSVLNIKDNVIVSCNNN
FT                 SHVDRQVVSQSSLPTLQDLPGNWIIKLNCNCKLDIGDQEVIPPLLCRHNGL
FT                 PLLPEVNLMLPFHWITLDKTKLMKASTLVQELRTSTIFPNLTTSGLKWTKL
FT                 EVINPTNIQPLWNSTGFHAHLWKFHETYTTGMLVIWNFMLTILTFFLWCRN
FT                 GYNGYHIPYLYTALNXIRGVQALTVDDASQRHFIFLIVLAILNLFMLWCFF
FT                 MLIFFYLRRKWKRNTMGCAFYSGAEVEEAYVPTSQRRPTRQTHRSIMYKGG
FT                 QVYPSLSLEESSAPPMKKVLLDHET"
XX
SQ   Sequence 8921 BP; 2872 A; 1752 C; 1674 G; 2583 T; 40 other;
     aattctggtg actccgaagc ttgttcccca tacttcttta cagttgtgtc gccgtggacg        60
     gctccttttt ttcgcgagca ctgggcattc accgtgtcgc acgctacccs agactgatca       120
     cctgtcggta cgtccgagac acttatgcca aagcgtggta aaattacacg cactacgccg       180
     ccacggacac gaagcgcatc aagggcaact gcacaacgtc ttccttcacc ccaggatccc       240
     ttagcgatcg aaagaagggc atccttcttt cgtcgtagaa gagccgtaga gtgttgcaga       300
     atctcacttc cggtttttca actttgcaac tgactcctac tccagggacc tccacatctt       360
     ttactccggt ggaatacgac gtccaaccac cagtgaatcc gttctaccta cctacttcag       420
     ttcatgaaca agatactgaa cttgtattgg accctgagga tccagaacaa cctactcaaa       480
     caggccaaaa gcgtaagaca cgtacctttt attcaaaatt taataaaaca tttttagaaa       540
     aagagatagc attacctwca accttaaccc cacctgtcgt cgcgcgtcct mcctcgccat       600
     cccctccttc cacgccgaca gaagaagcgt ttcacacccc tgcgcaatct ccagaaaagt       660
     ctgctgataa aacagcgact atcgctccac acccttccgg ttwtgactgg gaagcgttta       720
     gaaaatcttt ttgggcaaaa tatcaggcta tgggtactam taccacagct actacgacta       780
     ctgcctctag mtcaactttc acgacggcat ccgcgactac cacaatcatg aattcggtat       840
     atatcccagg tctaagctat aatggcagca caggtcctcg acaattttta gatcaatttg       900
     aaacactgtc tggtataaat ggatggtctg ggaaaacaaa attaaataac ttaatattac       960
     atctgacagg ccctgctttg gactgtttta gaaatgatat ttgtgtgaaa gccaagcagg      1020
     caggagtgac agaagcatcc tatttagcct ctagckcggc tccttcttat gatgatatag      1080
     ccaaattatt aactgatagt tttgggggaa gggaaacgga ggaagcgttg gaacgaaaaa      1140
     tagagaaatt acagtataaa caattccctt cagctgcgga atattttttt tcaaagatga      1200
     gattgataaa ccgtttagat gcctctatgc ccgatactag aaaggtcaat ttactattga      1260
     agggacttcc caaacaattg gggcagcaga tcgctatgca atcccccaaa gtgccagacg      1320
     atgtgttaac ctgtttaaac cagttagaaa gatacacaaa tagcatgggc gaaaaagaaa      1380
     tcaatgtact tgaacaggag gtcaagagaa tttttgaaca agttttaaaa gaaaaaaaag      1440
     gcgaagttaa cgaaataaaa aagcaagata atacagggaa caatcaggaa atttcctcac      1500
     aacctggtac cagtcaagct cgmaattcac aaagaggaaa tttcagggga aaaagaggca      1560
     ataataatcc aaataataat aacaagcagt tcgcccaggg atataataaa agaaattaca      1620
     aacaggaaga acgattaact atttcacctc atattacaat aaacccacag ccagccccta      1680
     catattataa ctcctacaga ggaggaagkg gtcgcggcgg tggcagmggt agaggaggta      1740
     gaggaaactt scgcggtaga ggtggaagag gaaattatcg acaaaattat caatattcac      1800
     aagggaattt tccgcagaat aattcacgag gaaattatca acagaataat tttgaagaaa      1860
     aaacctgtta cgcatgtaac atggtcgggc atattcaaag gaattgtcca tacatagaaa      1920
     agggaaacta agtatgccca aggcttcccc cttgggctca tgtaaacaag taactactta      1980
     ttctctgtca gatttgcatc ctgacaatca agctcaaatg ctsttttcaa tttttattat      2040
     taatgatacc cctacagtaa cattgctaga cactggggct tcatgttcaa wagttaataa      2100
     atcattagtg aaatcgcgac atgtatctga tactatttcc tccgtcaaag ggtttgcagg      2160
     tgacacattg ctaacagaaa ctactaccat agaatttcat ttaggtaaca gcttacatac      2220
     tttcgaggtg tatattaaag acgactatca tagaccattt cttatgggca atgacctttt      2280
     tgcaatatta aaaccaaaag tgcattataa aaatgcgact ctcacttttt gcgatttcgc      2340
     taatatcaaa tttccactat tcttcgatga agagactgca tataatgcgt tagcaaaatt      2400
     agccaaacgt gaccagtata tttatgaagc tgagcgcagc gtacaatcac atgtacggct      2460
     agaaagtaac tgcacattga aacctttaga ctatacgtgg gtacctatat cggtcattga      2520
     ccaagaagcc catcaacaat acatgtttga gccctctacg aaactttcag ataataagct      2580
     attgatcgca ccggaattgt acatacatga aataaatact ttcacgagta tcccagtctt      2640
     gaattgtaac aataaaccta taaaattatt acaaggtatg aaaattggtt acatacagtc      2700
     tsttgagaag gcataccctt tacagcaaca acaacaagaa caaattataa ataatmgtga      2760
     ntataaattt ttgaatgacg agcaactaaa ctctttaaaa ataaatcaac aattaacccc      2820
     acaacaacag ggatcaatgc ggcaattatt gagaaattat ggagattgtt ttagtttttc      2880
     aggaaatgat gttggaaaat attctggtac atatccgtat gataaaaaga tagcgattga      2940
     tactggtgat gccaaaccaa ttgcggtcag accaggaaga cattctttta cagaacgagc      3000
     tattattgat aatgagataa agaaattggc tgatctagga atcatcaggc gttccaactc      3060
     gccttggtct gcacccattg tattggtaga gagaaaagaa gaacctaaca gacccataat      3120
     ctgtatttct tacaaaaagc tgaatgattt acttgaacca gattcctttc cgttacctca      3180
     cgctaaagat gtcttttcac taattaaagg agctcgtttc tttactcatt gcgattttgc      3240
     ttcaggtttt tatcaatttg agttagacga cgcctccatc ccgaaaacag cattctccac      3300
     tcctgatgac cactgggaat tcctccgact cccgatgggt ctgaaaatat cacctgccgt      3360
     atatgtaagt atgattaagc acatattcca tgatatgatt tcaaaatttt gtttcatttt      3420
     tattgatgat gtagttattt tcagtgatac ctttgaatcc catctggtta aaggaaaact      3480
     cgtttttgat cgggtcagat ccgttaatcc aaccgtacgg ggttcaaaat gcgtctttgc      3540
     tgagcaacga ataaaattat taggatacat agttagtcct gatggtatct cggttgaccc      3600
     cgcgaaggtt gaagccgtta aaaacattcc gatacccacc actcctagat taataaaatc      3660
     atttatagga ctcgtaggct tttataggag acggataaag gattttagta aaattgccaa      3720
     accactaact gatttaacga agcaggatgt cccatttgaa tggacccctg cttgtgacgc      3780
     agcatttaat accttgaaac tgaaattgca acaagctcct attttagaag catttgatac      3840
     cagtaaaaca ccagaaattc atgcggatgc tagttgatat gccatagggc atgcgttaat      3900
     tcaaagggat gagaacaatt gcccccgcgt tgtttgttat ggctcaaggt tattgacacc      3960
     agctgagacc atgcattctg taactgaaag agaagcactt actatagtag atgctcttct      4020
     aagactcaga gagtatacat acggcactaa aattattatt tgcaccgatc accatgcact      4080
     ttgctcttta atgaaactta ggttcctcgt tctgctcgat tgtgtaggtg gatcacgatg      4140
     ctggcggacg ttgactttga gattaggtat acaaaaggga atgcaatgca cgtagattgc      4200
     ttgagtcgac ttatcaatgt agatcctaaa tacactaaag aaggttcagt caccgtagaa      4260
     gaattaaaaa ataacaaaga taattttgca ctttctatcg aggtttttga cttgcgcaag      4320
     gagttgcata ggtstatttt agaggatccg ttttataatt cagtttactt acwtaccaac      4380
     gagcaaggca atgaacgctt gggtaagtac gcaataataa acaatctttt atattacata      4440
     cacgataaaa caccaaagtt agtgattcct aagaagttca ttccttatat cctacacaca      4500
     tatcataata tcccaagttc tgggcatwct ggtgtgctgc gtacatataa taagatagcw      4560
     cttaagtatt attggcagaa tatgtacact gattgtaagc gttatataga gtcatgtatt      4620
     cagtgtgcca agagaaaccc attcaatcaa gcccctgctg gtttaaccat tccacatgaa      4680
     ttacctccac cttttcaaaa aatatacata gattatttag gaccactagc tgcatcaaca      4740
     ccaggcaagt tctgctatat tgctgtggct gtagatgmcg gcacgcgttt tcttatagct      4800
     aaaccagtac gactcgccaa tgctaaatcg ttggtggatt ttgtagtgaa tgagattgtt      4860
     cttgtacatg gttgtcccaa gatcattgtg tttgataacg cgagcattaa caaaagtaca      4920
     ttaacacaag aaacattgaa agccctcsgg gtagcccctc tatatacaac agcttactcg      4980
     cattctaatg cagttgttgg acgctatatg cggactatag aagaggttct ctcacattat      5040
     gtgagctccc acacacggga ttggccagaa tttttaaaag ctgcagtgtt tgctattaac      5100
     actagtgaac atagtgctat gaaacattca cccttttttc ttacctacgc tcgccatcca      5160
     ctatttcctc aagatgtgga ttttcccatt gaaagattac aggacagttc atttctgcaa      5220
     caagttacag ctgctagaaa tgaagcgaga tgtaatctcc ttaaagcgca agataaaagc      5280
     agtattcatc gtaacctgca tcgtaaagac attatgtttt ctccgggcga tttatgtatg      5340
     gtagcttttc ctaaccttac cgagcaacaa gcaagccgta aattatctgc caaaatgaac      5400
     ggcccatttc gggttcttga ccaggttgct ccsaatacct ctattctcca agstaataac      5460
     cccaacgcga aatgtattag agttcatgtg gagagaatga gaaaattttc tgagcgtcca      5520
     ttatctcttc atttttccgc ggccctccca ccttctcata taaaccccga ttcctctcca      5580
     aatcawtcca atcctttacc ctmcgttcag gagaacgtta tcactcgtgt tgggcgaatc      5640
     agtagacctc ctttgcgttt gaatttgtga ttttgtttcg attttactat gagatttctt      5700
     atccttttta gtctgtgctg gtgtttgggg caatgtgagt tactgcctcc tcagcagtat      5760
     cgcattcgct caagttcagg tttgtactta aagcctgcaa ctctacaacc agtaatatat      5820
     tctcagttta cgactttact ttttaatcac tctttcgaca ttcaacctaa atctgtatat      5880
     tttaacgata agacacttaa ttattgtgcc cgatttgtga atggatcaaa tactgataaa      5940
     gtgacttgta acctgtttga tggtatcgtt acacacataa aacaattaga ggcgagtaca      6000
     gataatattt tatttcgtat gacagggcac acatcagggc aatataaacc acgatatctt      6060
     ttaaacagaa aaaaacgcca agctatatta ggtgcattgg cagcatttgg gggatataaa      6120
     atatataatt atttttcagg agaatctgat agcgaggctg tttatgggca attatcgcaa      6180
     gggttatcac aagtacagaa agaactggtc agtgaaggtc gaaacgtagt gaaccttgca      6240
     aggcagattg ataataaaat ggacgcagta attcattcat ttaaccagat gatggaagcc      6300
     gaacaacata atatggttac tcatttaaaa gcactttcaa tcggctctgt acggcaatta      6360
     ttcattcagt ccaatgtcat tcaagamgtt actagattag cagatgccgt attataccaa      6420
     tctgtattgc aggattgtcg caatagaaaa ttaagcataa gtttaatgtc acaacaagtt      6480
     cttaaaatgg atttgcaacg attgcaagat aaattggata aacaggaatt tgaattagcc      6540
     atccctatta ctgctatttc tttgtatttt mattttccgt tagttacatg tagaataaat      6600
     ggtgaaacta agtttataag tattattatg gatattccaa ttaaaaggaa aggcgataag      6660
     ttcaagttat atcaggcagt atctattccc tttaataaag ataatgaaac atgtagacta      6720
     ctcaatgatt atcatacagt agtaatgagg aataaagaac ctttcatttt agaaggtagc      6780
     caggcgcaca aatgtaattt tgattcggaa ctttgccgtt ttgaagaata cggtgctgat      6840
     ttgagtaaaa gtgcgatttg tattaaagca atgattaagg gaaaaccagt taatgagatt      6900
     agaaaaatct gtccatttga gtgtcatcct aataatcatg aaatcgtagt tactgaatta      6960
     gataatatgc attttagtgt tttgaatatt aaagataatg ttatcgtaag ttgtaataat      7020
     aatagtcatg tagatagaca agtggtctct caaagctctc tcccwacgct ccaggatctg      7080
     ccgggaaatt ggataatcaa gctgaattgc aactgtaaac tggatatagg agatcaagag      7140
     gtcattccac cattgctgtg tcgacacaat ggattacctc tattaccaga agtaaaccta      7200
     atgctaccat tccattggat aaccttggat aaaactaaac ttatgaaggc ttcaacgctg      7260
     gtccaggaat tacgcacatc aactattttt cccaatctca caacaagtgg attgaaatgg      7320
     acaaaattgg aagtcataaa cccaacaaat atccaaccct tatggaacag taccggattc      7380
     catgctcatc tatggaagtt tcatgaaacc tacacaaccg gaatgttggt gatttggaat      7440
     tttatgctca cgattctaac attttttcta tggtgtcgaa atggttataa tgggtatcac      7500
     attccctatt tgtacacagc cttgaacaaw attagaggag tgcaagctct tactgttgac      7560
     gatgcgagtc agcgtcattt catttttcta attgtattag ctattctaaa tttatttatg      7620
     ctgtggtgct tttttatgtt aatctttttt tatttacgac gtaagtggaa gcgaaatacc      7680
     atgggttgtg ccttttatag tggtgcagaa gtsgaagaag cctatgtacc tacgtcacag      7740
     cggcggccaa caagacaaac acatagaagc attatgtaca aaggtggaca agtgtatcca      7800
     tccttatctc tagaggaaag ttcagctcca ccgatgaaga aagtcctttt ggaccatgag      7860
     acgtaaaatc aaactgattt tattttattt ttttagtttt aaaaatgatt ttcttaataa      7920
     tggtataaca cgcaatcaaa ccattcaaat attgtgtgtc aaatcctctt gtttataaag      7980
     tatgatggaa cagaagtgaa tgcacaatgt tcatcaactt agtagaaaag taacctttgt      8040
     acacatagcc ccgtgattgg cgtatcatgg ccttggtaga agaataagtg atcctatgag      8100
     cacgatgata ggtattattt atcactgatg gtaatccagt gtcattgaac tgatattmct      8160
     gtactgaacg gactgataac cataatgtac cagctagaaa aaaacaacaa caataatatg      8220
     ttaktgattt ttgatgtatt atataatatt tgataatatt tmgataatct tgatatttta      8280
     wawtgattcg aatgaatata catacgtgtg tgatgatata tgttacttct gttgtataat      8340
     cgagcggtgt atggaaacga gcaatcgggt tgatgaatga catagtggta ggctatccag      8400
     gacccgttcc gaggtggaaa agacgaacag accagataac gtcgccaagg actkattcca      8460
     ggcagaacaa acaaacccat kggtcctgat aaacactccc tacaaaattg ccgttgtccc      8520
     tcgtcaaaat actccaggaa tcccagacca taagcaaaca ctactaccgc caataaaatg      8580
     ccgatctttg agaaagacat ttttgaaaaa aaaatcctat cggatggaaa tgaaaaaaaa      8640
     tcctatcgga tggaattgaa aaaaaatcct aacggatgtg atgaatagag tctcaagatt      8700
     gttccataga tttggaactc tcaactcaag agcaataatt ggaataatga atatccctat      8760
     catgcaccgt cttaaaatac tacacattag atgtcataag gagcagcgca gatttcccat      8820
     gtcgttcgtg gcccctcatt gactttgacc tgcttcacct ggattgtcct gcatcagsaa      8880
     ttccattatc atcaggagat gatttawctt tttgtcgggg t                          8921
//
ID   Gypsy-51_SiCu-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-317
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5128-5128 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 317 BP; 109 A; 43 C; 52 G; 113 T; 0 other;
     tgttacgaag ccacatcatc atcatcatca catcaacaag gagagagtta cgagagaggg        60
     tgtgtattag gtatgatagg tatatgtaat atgaatatag taacatgtaa aaggtaatgg       120
     tgtttatata taagttagtt aacttttaga aagttatatt ttttaaggta cttgttaaca       180
     ataagatttt acttctttca atttactatt gtaaaacctc tactctcttt gagtataaat       240
     acccctcaat tgtatagaaa taaacacagt taaattcttg acgaatcgct gtcagttcgc       300
     atttattttg cgtaaca                                                      317
//
ID   Gypsy-51_SpEx-I repbase;    DNA;    INV; 4848 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4848
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4118-4118 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..1203
FT                 /product="Gypsy-51_SpEx-I_1p"
FT                 /translation="MNVDESTMADAELPHGVSSAMPAPPVSQKRITSSCSS
FT                 PILGQEVPHNSTSHRNTSQVNGGTVPGGSTDGHDIRTVEFVPLNYMQNMMQ
FT                 EMMTQLIRTTAQAFNPPNVRHTPRMRSLEHIYVPAFDPDDRTDTVQVWCRN
FT                 IEDLKTEYELSDREILNLTRKNLRGRAAEWARRNYSSLTSWTELKTGLIET
FT                 FADEARYYDDLTQFMEYTSEQAGSLAEYATRKWELAKKAIGVEMTEQRLVE
FT                 AVISGMSDFRIRSDLLRLTPKTLPQLIQSLNSYKRKRPGKESDHTVPSKRL
FT                 KNVPNSDVTSKRCHKCHKLGHLQKDCRSGSINRSPQKNPASTSDGSKPAES
FT                 KPLKNNTCTFCKKRGHTFENCFQRLNKNAKDEKIVSCK"
FT   CDS           1166..3253
FT                 /product="Gypsy-51_SpEx-I_2p"
FT                 /translation="IRTRKMKKSSHVNSLVLSSKNLHSIKIENRDYSCLID
FT                 SGAECSLMRESIGDSIKGKIMYKSLILRGVGDNSFRSSRIKLCVVCIDGLN
FT                 IELEFVLVPDRYIQYDVLLGQNLFDVPGIQVTFSKNFVKVCRNSYNINCIQ
FT                 KEFDLDMVDVNPDISPEIKIQLHNLLQSYSEIFTSGNAVSQVTTGELTIRL
FT                 KNPDKIVQRRPYRLAPAERDHVKNLIKDLKDNNIIRDSNSPFASPILLVRK
FT                 KDGSDRMCVDYRELNSNTVRDHFPLPIIDDHISKLSGAKYFSVLDMAAGFH
FT                 QIPIAKDSIEKTAFVTPDGQYEFLRMPFGLCNAPSVFQRAINTALKQFVDD
FT                 FVLIYIDDVVIFSETVDQGIERLKVVLDALQKTGFSLNVKKCKFLQNEIEY
FT                 LGRIVSNGRVKPSPGKVRALLDAPIPTTVKQVRQFCGLASYFRKFIPNFSL
FT                 TMIPLYNLTRSNVKWNWTSEHEAARNKILEYLASEPVLTLFDPTKPVELHT
FT                 DASSAGFGGILFQKHNDQMKVVEYFSMRTTDTESRYHSYELETLAVVRSIK
FT                 HFRHYLLGRPFKVVTDCNSLKASRNKKELLPRVHRWWAYLQSFDFTIEYRK
FT                 GERIPHVDYLSRNPTTVNISNVQNYSEWLEVEQNNDPETKTIIESIQQGSL
FT                 DKSVASSYEIHGGLLYRIVSIGNKIKKTFICSKKLSVAYNTNLSRFS"
FT   CDS           3126..4262
FT                 /product="Gypsy-51_SpEx-I_3p"
FT                 /translation="HLVMKYTAVYCTVSFPLVTKLKKRLFVPKSYRWHIIQ
FT                 IYHDSLKHFGWEKTLDKIREQFWFPNMSKYTRKYVDNCLTCKINKSQSGSR
FT                 QITLHPIDKPPTPFHTIHMDTTGKLSGNKPTKQYAVVFIDAFTKFVFIKPV
FT                 TNLTAAATVNCLKELIYTFGTPKRIVCDQAASYTGREFSSFCEHWSIEIHF
FT                 IASGVSRANGQVERMMKVLTNCFTIVENTSRRSWKDAVGEVQLAINSTFSK
FT                 STGHTPFQLLMGCDQSPPAISALLNDVERLDLDACREEAKLRMDELAQTKK
FT                 ANYDKTKAKIVPFKVGDTVLIRQNPRAINKLDSKFRGPCVITEINDNDRYT
FT                 VRVHKTGNELYVSHDNMRIVSPDMGCELTDSLDTFN"
XX
SQ   Sequence 4848 BP; 1463 A; 960 C; 1001 G; 1424 T; 0 other;
     tcagaagtgg gatgtgaaaa cataaactac gcctacaaat aattgatttc aggtctcaag        60
     atgaatgtcg atgaatctac gatggcggat gccgagctgc ctcatggtgt gtcgagtgcc       120
     atgccagcac cgccggtgtc tcaaaagcgg ataacctcca gctgctcttc accaattctg       180
     ggccaagaag taccgcataa ttcgaccagc cacagaaata cgtctcaagt taatggcggt       240
     accgttcctg gcggatccac ggatggtcat gacataagga cagtagaatt tgtaccttta       300
     aactatatgc aaaatatgat gcaggaaatg atgacgcagt taatccgtac caccgcacaa       360
     gcctttaatc caccaaatgt gcgacatacc ccgcggatgc gaagtcttga acatatttat       420
     gtccctgcat ttgatcccga tgatcggacc gatactgtac aagtttggtg ccgaaatatt       480
     gaagacctca aaaccgaata cgagctttct gatcgagaaa tccttaatct aacccggaag       540
     aatttgcgcg gacgggccgc tgaatgggca cgtcgcaatt attcgtcttt aaccagttgg       600
     actgaactca aaacaggttt aattgaaacc tttgcagatg aagcccgcta ctacgatgat       660
     ctaacgcagt tcatggaata caccagtgag caagccggca gcctagctga gtacgcaact       720
     cgaaaatggg agttggcaaa gaaggcgatt ggcgtggaga tgactgagca acgtctcgtt       780
     gaagcagtta tttcgggtat gtctgatttt cgtattcgct ctgatttgct tcgtcttaca       840
     ccaaaaactt tgccacagct aattcaaagt cttaattcat ataagcgtaa acggcctggg       900
     aaagagtctg atcacactgt tccatctaaa cggttaaaaa atgtccctaa ttcagatgta       960
     acatccaagc gttgtcataa atgtcacaaa ttaggtcact tacagaaaga ttgtcgttcg      1020
     ggttcaatta atcgcagccc tcaaaagaat ccagcttcta cttccgacgg atccaaacct      1080
     gctgaatcaa agccccttaa aaataacacc tgtacatttt gtaaaaaaag aggacatacc      1140
     tttgaaaact gttttcaacg cttaaataag aacgcgaaag atgaaaaaat cgtctcatgt      1200
     aaatagttta gttttgagta gtaaaaactt gcactcgatc aaaatcgaaa atcgcgatta      1260
     ttcgtgtctg atagacagtg gtgcggaatg ctctcttatg cgcgaaagta taggtgattc      1320
     tattaagggt aaaatcatgt ataaaagtct aattttacga ggcgttggag acaattcttt      1380
     tcgttcgtca cgtataaaac tgtgtgtggt gtgtattgat ggcctcaata ttgaattgga      1440
     atttgtccta gttcccgaca gatacataca gtatgatgtt ttacttggtc agaatctttt      1500
     tgatgtcccg ggaattcagg tcactttttc aaagaatttc gttaaggtct gtcgcaattc      1560
     ttacaatatt aactgtattc aaaaggaatt tgatcttgac atggttgacg ttaaccctga      1620
     tataagtccc gaaattaaaa tacagttaca taatttatta cagtcttatt ctgaaatatt      1680
     cacatctggc aatgcagttt cgcaagtaac aacaggcgaa ctgactattc gattaaaaaa      1740
     cccagataaa atagttcaaa gaaggcccta tagattggct ccagctgaac gtgatcatgt      1800
     caagaatttg atcaaagacc taaaagataa caacatcatt cgagatagta attcaccctt      1860
     tgcgagcccc atattactag tgcggaaaaa ggatggtagc gacagaatgt gtgttgacta      1920
     cagagaatta aatagcaaca ccgtccgcga tcactttcca cttcccatta tcgatgacca      1980
     tattagtaaa ttatctggag ctaaatactt ctccgtattg gatatggcgg cgggttttca      2040
     ccaaattccc atagccaagg actcgatcga gaaaactgct ttcgtcactc ctgacgggca      2100
     gtatgaattc ctacgtatgc catttgggct ttgtaatgca ccttctgttt tccaaagggc      2160
     catcaataca gcacttaaac aatttgtcga tgattttgtt ttaatttaca ttgatgacgt      2220
     tgtaatcttt tctgaaacag ttgatcaagg tattgagcgt ctaaaagtag ttttagatgc      2280
     tcttcaaaaa accggttttt cccttaacgt taagaaatgc aaatttttgc aaaacgagat      2340
     tgaatattta ggtagaattg tctctaacgg tcgagttaaa ccaagtccgg gtaaagtccg      2400
     tgctcttcta gatgccccca tcccaacaac tgtcaaacaa gttcggcagt tttgtggctt      2460
     agccagttac tttcggaaat ttattccaaa tttttctttg acaatgattc cgctatataa      2520
     cttgactcgt agtaatgtca aatggaactg gacatctgag cacgaagctg ctagaaataa      2580
     aattcttgag tacctagctt ccgaacctgt gctaacacta tttgatccta caaaacctgt      2640
     agaacttcac acagatgcca gttccgcagg gttcggaggt atcctttttc aaaaacataa      2700
     cgatcagatg aaagtcgtag agtattttag tatgcgcacc actgatactg aaagccgcta      2760
     ccactcttac gagttggaaa cgctggctgt ggttagatct attaagcatt tccgtcatta      2820
     tttactaggt aggcctttta aggtcgttac agattgtaac tccctgaagg cctcgcgtaa      2880
     caagaaagaa ttattacccc gagtgcatag atggtgggcg taccttcaat ctttcgattt      2940
     taccatagaa tatcgtaagg gagaacgtat tccccacgta gattatttga gccgcaatcc      3000
     gacaactgtc aacataagca atgtccaaaa ttatagtgaa tggttagaag tagaacaaaa      3060
     taatgaccct gaaacgaaaa ctattatcga atctatccaa caaggcagtc ttgataaaag      3120
     tgtagcatct agttatgaaa tacacggcgg tctactgtac cgtatcgttt ccattggtaa      3180
     caaaattaaa aaaacgttta tttgttccaa aaagctatcg gtggcatata atacaaattt      3240
     atcacgattc tcttaagcac ttcggttggg aaaagaccct tgataaaatt agagagcagt      3300
     tttggtttcc taatatgtct aaatatactc gaaagtacgt tgacaactgt ctgacctgca      3360
     aaattaataa aagtcaatct ggttcccgac aaattactct acacccaata gataagcctc      3420
     cgacgccatt ccataccatc cacatggata cgaccggcaa attgagcggt aataagccta      3480
     ctaaacaata tgctgtcgtc tttatagacg catttacaaa gttcgttttt ataaaacctg      3540
     ttacgaattt gacagcagcg gcgaccgtca actgtttaaa agaattgatt tacacttttg      3600
     gcactcctaa acgtattgtt tgtgatcagg ctgcttccta caccggaaga gaattttcaa      3660
     gtttctgtga acattggtct atagagatac atttcatagc tagtggtgta agccgtgcaa      3720
     acgggcaagt ggagcgaatg atgaaggttt taacaaactg cttcacaatt gtagagaata      3780
     catccaggag aagttggaaa gatgctgttg gcgaagtgca gttggcaatt aatagcacat      3840
     tcagtaaaag tacaggccat actcctttcc agcttctcat gggctgtgat cagtctcctc      3900
     ccgctatatc agccttacta aatgatgtcg aacgtctgga cctcgacgca tgccgtgaag      3960
     aagcaaaact caggatggac gagcttgctc aaactaaaaa agctaattat gataaaacta      4020
     aggctaaaat tgttcccttt aaagttggtg atactgtatt gattcgacaa aatccgagag      4080
     caattaacaa acttgacagc aagtttcgag gtccatgcgt cattacagag ataaatgaca      4140
     atgatagata tacagtaaga gttcataaaa ctggtaatga gttatatgtt tctcatgata      4200
     atatgcgaat tgtcagtcca gacatgggat gtgaattgac tgactcatta gataccttta      4260
     attaaatttt gtatttatat gtattgatgt aagttttccc tttgggaaat tgttcggcgt      4320
     aacggtgacc gtctggccaa cggtcatggt tatgtctaac aatcgtaccc gagccatgtg      4380
     atttggcgtt gcggtcatgt gatttgacca gatttaattg ccatgtgatt tggcgttgcg      4440
     gtcatgtgat ttgaccagac ttaactgcca tgtgatttgg cattgcggtc atgtgatttg      4500
     accagactta actgccatgt gatttggcat gccatgtgat ttggcattgc ggtcatgtga      4560
     tttgaccaga cttaattgcc atgtgatttg gcgttgcggt catgtgattt gaccagactt      4620
     aactgccatg tgatttggca ttgcggtcat gtgatttgac caaatttaat tgccatgtga      4680
     tttggcgttg cggtcatgtg atttgaccag atttaattgc catgtgattt ggcattgcgg      4740
     ttatgtgatt tgaccaatgc tttattatta agaatttttg aatgtatttt tagcactgat      4800
     tgttaatggt tttattcgcg agccataggc tgctcgtcag aatggccg                   4848
//
ID   Gypsy-51_SpEx-LTR repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-431
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4180-4180 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 431 BP; 122 A; 60 C; 74 G; 171 T; 4 other;
     tgtgagagtg aacaawtttt tgtaatttaa ttaatgtatt ttctaaccaa cttccggttt        60
     atgaaagtat tgcatttgac ttctacttct acccccactc actatcgaat agtagtataa       120
     aagaggggkc acacttgtcg acggatcaga agttgttcga ctgcggacac ggcacaacag       180
     tgctctgaac tgtcaggtaa tattgccaat ttattttgtt actatgtaat atgtgatgta       240
     ataatgttat gatgttatgg tgttatgata ttatgtgatg ttatgaatgt ttatgcctta       300
     cgtcacgtca tatatttcta tttgttcgtg ataattggta gatatgttta ttatggtcaa       360
     attatttaat aaattgttat gaatatttaa atagtctttt ttactgttkw ttactactaa       420
     tttctcccac a                                                            431
//
ID   Gypsy-51_TrVa-I repbase;    DNA;    INV; 4567 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4567
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 296-296 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..4425
FT                 /product="Gypsy-51_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTAAANNTMEFGAIFKIPALKFDKSIGAKWPKWKSI
FT                 FNLNMKACGKDKSNDEDQKIAILLTHMGPDXIDVFETSTEPKTXLKEVIEL
FT                 FDXYCVGAPNHTMETFKFHKISQPEGKNFDQFLTELKTQAQTCQFVCGNNN
FT                 CKQSYSERMILDHIVCNINDKDVQQSLLVSSKKLSLDEVAQICRAAETGKQ
FT                 XSQELCGNNEMEVNHTKYFKSSHNKNYKNSKNTLRESNNNFSVKPYYCKKC
FT                 GTKHVRASCPAFGKKCPLCGNLNHFEVGCFKRFKKNKTNKKNFKSNVNQIE
FT                 NGDSSDDSDEIFNCNHVEILKTCNNISSKTEDWRENILVNNHPVNFRXDTA
FT                 SDLNILPLTIFNEINSNAKIEKTRDRIKSYGGFILEPLGVVFNLQCKYKQE
FT                 TLVQDFTIVDSDSSPILSGEACRLLKLIKRVHNISMKNFDNTHNFRKSIHN
FT                 EELQNEKLQPVSNKNKNDFIKKNAELFSGIGKMPFKVKITLSEDAKPVVRS
FT                 ARRLPEVLKSKLKNELERLEKLDIIEKVDKPTDWVHDIVIVEKKDNSVRLC
FT                 LNPIPLNKYIKREHFSIPTQEELTANLSGRKVFTVLDLKEGFHQFELDEPS
FT                 SDLCTMNTPFGRYKYKRMPYGMSNFPEIFHRENTKIFGDLKGVQVLSDDMI
FT                 ISGKTEAEHDENLNAFVQRAYKNGCKFSVNKFQYKLKEVRYNGLIYSGEGI
FT                 KPDPLKVQAIQEMVEPKSVKELQRFLGAVNYINKFIPAYSKVTAPLRELLK
FT                 RKVLWQWSSKQEEAFVKLKQLVINAPTLKIFDPTQKVEIQCDASKDGLGSC
FT                 LLQNQQPVAFASRSLNDAEKRYSQIEKEMLSIVFSANRFHNYIYGHSDINI
FT                 FTDHKPLITIIHKNLHKNSARLQRMQLKLLKYKFHLEYLPGTKMFIADMLS
FT                 RAFLTGDFPEDIDMTKIVHAVALEEFLPIPSSDIENLRKTTAADHNLASLS
FT                 TFINEGWRTVNRRILNGELKVFFGLRNNLTYNEGLIFFNDRLVVPTQLRDS
FT                 MVHLVHSKAHLGITKTVARMKETMYWPNMSVNICNIISSCPTCQKFQNNNV
FT                 KEPLIPSKTPAYPFQTLGMDIGEYQGKIYLVVEDYYSRWLEIIPLTSKTST
FT                 AIISRLKTLFSTFGTPETVRCDNNPFKSSEMLDFAKQWNFEIITSSPLYPR
FT                 SNGLSEKGVGIAKQLIKKAALSNTDLYEALQEYRNTPIANLGYAPSQLLMG
FT                 RLLRNKIPTCINLLKIQNYDEDARQKMEILKQKTKSHHDKTAKVRKEFSLQ
FT                 EPIYFRWKDHWKEGMIVDVLKEPRSYCVEDNEGKTYRRNSYFLRSRRLTTT
FT                 FSQTSTNCKPASIVPQTSTQRKPISVLPLASWILDNNVLAQAAQEPSAQAA
FT                 QEPLAQAAQEPLAQAAKNLQHKQLKNL"
XX
SQ   Sequence 4567 BP; 1682 A; 874 C; 791 G; 1215 T; 5 other;
     tggtgtcagg tgaaaaagtt cgtctaactt tcccgtgcga cgcaaataat caatatcggt        60
     aattgtataa ccaacgtgta cttcatttat aacaacgtga ttcgtgataa cgtgattaac       120
     cacatggcag cctaatttgc ataaaagtgt cggtgatcgg tacatgccaa tccagcgtta       180
     ttcgtgatct caacgtgtat aatcagattg cagccttaat tcgcaaataa ttatagccga       240
     attagtaata agaagatgac gactgcagca gctaacaaca caatggagtt tggtgcaatt       300
     ttcaagatac cagcgttgaa attcgacaaa tccatcggag caaagtggcc aaaatggaaa       360
     agtattttca accttaacat gaaagcgtgc ggaaaggata agtccaatga tgaagatcag       420
     aaaatcgcaa tcttacttac tcatatggga ccagacscta tcgatgtctt cgaaacatct       480
     acggagccca agacawcgct taaagaggta atcgaattat ttgacawata ctgcgtagga       540
     gcccctaatc acacaatgga gactttcaaa ttccataaga tctctcaacc tgaaggtaaa       600
     aattttgacc aatttttaac tgaattaaaa actcaagcgc aaacttgtca atttgtatgc       660
     ggtaataata attgtaaaca atcctactca gagcgaatga ttttagacca tattgtgtgt       720
     aatatcaatg ataaagatgt tcaacaatcc ttgttagtta gcagtaaaaa actatctctg       780
     gacgaagtag ctcaaatatg tagagcagcg gaaactggta aacagtawag ccaagaactc       840
     tgcggaaaca atgaaatgga ggttaaccac actaagtatt ttaaaagttc acataataag       900
     aactataaaa attctaagaa cacactgaga gaaagtaata ataatttttc tgttaagcct       960
     tactactgta aaaagtgtgg aaccaaacat gttcgtgctt catgtccagc atttggtaaa      1020
     aaatgtcctt tatgcggtaa ccttaatcac tttgaagttg gttgttttaa acgcttcaag      1080
     aaaaataaaa cgaataaaaa gaattttaaa tctaatgtta accaaattga aaatggcgat      1140
     tcgtcagatg actcagatga aattttcaac tgtaaccatg tagaaatcct taaaacctgt      1200
     aataatattt cttccaaaac agaagactgg agagaaaata ttctagtcaa taatcaccct      1260
     gtaaatttta ggttmgacac agcaagcgat ctcaatatct tgcctttaac aatttttaat      1320
     gaaattaatt ctaatgctaa aatagagaag actcgtgata gaatcaaatc atatggaggt      1380
     ttcatccttg aaccactagg agttgttttt aatctacagt gcaaatataa gcaagaaact      1440
     ttagttcaag atttcacaat tgtagattca gactcatctc caattttaag cggcgaagca      1500
     tgccgtctac tgaaattaat caaacgagtg cataacatat caatgaaaaa ttttgacaat      1560
     actcataatt tcagaaaatc aatccacaac gaagaactcc agaatgaaaa gttgcaacca      1620
     gtatcaaata aaaataagaa tgattttatc aagaaaaacg cagaactctt ctcaggaatt      1680
     ggtaagatgc cttttaaagt caaaattaca ttaagtgaag atgcaaagcc agtggtaaga      1740
     tcagccagaa ggttacctga agttttaaaa agtaaattaa aaaatgaact tgaacgccta      1800
     gaaaagctag acattattga aaaagtggac aaaccaacgg actgggttca tgatatagtc      1860
     atcgtagaga aaaaagataa ctcagttaga ctctgtctta atccaatccc gctaaacaaa      1920
     tatataaaaa gggaacattt ctccattccc acgcaggaag aattaactgc taatttgagt      1980
     ggaagaaaag ttttcactgt tctagactta aaagaagggt ttcaccaatt tgaattagac      2040
     gaaccatcta gtgatctctg cacaatgaac acaccttttg gtaggtataa gtacaagaga      2100
     atgccatatg gtatgtcaaa cttccccgaa atttttcatc gtgaaaacac caaaatcttt      2160
     ggagacttaa aaggtgtgca agttctttct gatgatatga taatctcagg aaaaacggaa      2220
     gctgagcacg atgaaaacct caacgcattt gttcaaagag cttataagaa tggatgtaag      2280
     tttagtgtta ataaatttca atataaactt aaggaagtta gatataatgg cttaatttat      2340
     tcaggcgaag gaatcaaacc ggatcctctt aaagttcaag caattcaaga aatggtagaa      2400
     cctaaaagtg ttaaggaact acagcgattt ctcggcgctg ttaactacat aaataaattc      2460
     ataccagcat attccaaagt cacagcacct ttaagagaat tattaaaacg taaagttcta      2520
     tggcaatggt ctagtaaaca agaagaagca tttgttaaac tgaagcagct agtaattaat      2580
     gcaccaacgt tgaaaatttt tgatcctacg caaaaagttg aaattcaatg tgatgctagt      2640
     aaagatggcc tcggcagttg tttgttacaa aaccaacaac cagtggcttt cgcttccaga      2700
     agtcttaatg atgcggaaaa aaggtatagt caaatagaaa aagaaatgtt aagcatagtt      2760
     ttttctgcta accgctttca taactatatc tacggtcata gtgatatcaa catttttaca      2820
     gatcacaaac cactaattac catcattcac aaaaacttgc ataaaaattc tgctaggtta      2880
     caaagaatgc aactgaaact ccttaagtat aaattccatc tagaatatct tcctggtact      2940
     aaaatgttta tcgctgacat gctttccaga gcatttttaa caggtgattt ccctgaagat      3000
     attgatatga ctaaaattgt ccatgctgtt gcacttgaag aatttcttcc tattccttcg      3060
     agtgatatcg aaaatcttcg taaaactaca gctgcggatc acaacttagc gtccctatcg      3120
     actttcatca acgaaggatg gagaacagtc aatcgtagaa ttctcaacgg tgaactaaaa      3180
     gtattctttg gactcagaaa taacctaacc tacaatgaag gcctaatatt cttcaacgac      3240
     aggttagttg ttcctactca actcagagat tctatggttc atttggttca ctcaaaagcc      3300
     cacttaggta tcactaagac agtggcgcga atgaaagaaa ctatgtactg gccaaatatg      3360
     tcagttaata tttgtaatat catcagttca tgtccaacat gtcagaaatt tcaaaataat      3420
     aatgtcaaag aacccttaat tccatctaaa actcctgcct atcctttcca aacactaggt      3480
     atggacatcg gcgaatacca aggaaaaatc tacttggtcg ttgaagatta ttattccaga      3540
     tggctggaaa tcattccatt gacaagcaag actagtacag caattattag cagactaaaa      3600
     accttgttta gcacctttgg tactcccgaa actgtaagat gcgataacaa cccgtttaaa      3660
     agctcagaaa tgttagactt cgcaaaacaa tggaacttcg aaataattac ttcgagtcca      3720
     ctctacccac gatctaacgg actttccgaa aaaggtgtag gcatagccaa acaacttatc      3780
     aagaaagcag cactttccaa cactgattta tatgaagcgt tacaagagta tcgtaacaca      3840
     ccaatcgcga atctagggta tgctcctagt caattgttaa tgggaagatt actgcgaaac      3900
     aaaattccaa cctgtatcaa cctactcaaa atccaaaact atgatgaaga tgcgcgccag      3960
     aaaatggaaa ttctgaagca aaaaaccaaa tcacatcacg ataaaacagc caaagtaagg      4020
     aaggagttca gtcttcaaga acccatctat tttcggtgga aagatcactg gaaagaaggg      4080
     atgattgtag atgtcttaaa agaaccacgt tcctactgcg tcgaagacaa tgaaggaaaa      4140
     acttatcgca gaaattcata cttcctccga tcaagaagat taaccacaac attctcgcaa      4200
     acgtcaacca attgcaagcc agcaagcatc gtgccgcaaa cttcaaccca acgtaagcca      4260
     ataagcgtcc tgcctcttgc atcatggatt ttggacaata atgttttagc acaagcagct      4320
     caagaacctt cagcacaagc agctcaagaa cctttagcac aagcagctca agaaccttta      4380
     gcacaagcag ccaagaacct tcagcacaag cagctcaaga acctttagca caagcatctc      4440
     aagaaccggt gttaaccgct cgaacatcgg aagctcaact taaaagacca gctcacccgg      4500
     attggactcg gtcaaaacgt attattaaaa aaccaaaaag acttatttct gaaacttaaa      4560
     gggaggg                                                                4567
//
ID   Gypsy-51_TrVa-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-51_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-212
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 355-355 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 212 BP; 48 A; 46 C; 40 G; 78 T; 0 other;
     tgttgtatgt tatgttttct aattaggttg gcactctgct gcccttcccc cctgtcgtat        60
     gtgacagatc agctgttaag cctagcggtc gagggctgtc gatgccgcgc attaatacat       120
     tcgttcatgt tacacctaac tacaggttaa gcttatatcg gtctttgtca tttgttgttt       180
     attcctaaat cctaatatct aataatataa ca                                     212
//
ID   Gypsy-520_AA-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-520_;
KW   Gypsy-520_AA-I; Gypsy-520_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5986
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5986 BP; 2263 A; 1088 C; 1007 G; 1628 T; 0 other;
     tggctgaccg cgccaagtgc acggttcctg taaagacctt ctcctaagtg gctagcgaaa        60
     gtgtaaaaat gtctcgagcc cgcgttgagt gacaaatcca gaaaaaaaga acatcagcaa       120
     cagtgttgtt tgtggagtaa agcagttcaa aatgggcaaa tctaattcaa aaagtgtttc       180
     aaacacagga gacccccaag tagttgtgct taatcaattg gaggcgcatg cagaaatgca       240
     tgatagccat gatatcaaac taacaatcat actcgtcatc gtttctgtgc aattagtggc       300
     acaagcctat atcttgtgga gaaaacattc acgtaggcaa gctttgagag ccgctaaatc       360
     tgtgctcgaa ctacaaaaag tttaaaagtg attgacaaag taaaaaaaaa aaaacaattg       420
     caaaaaaaaa aaaagacgaa aagtgaaatt acgagcaaaa aaaaaaaaaa aataaaaatt       480
     acaacgttat tgtctgcgtg ggagacggat ttcagcctgg cacctgagct gcatggctgc       540
     aacgttattg tgcgcgaggg aaacaatgtg aacacagaaa aactccagct tggcatctct       600
     tccggttctt tccttgagtc atcccgtcat caatcatcat aatggttctt attgcaagtt       660
     ttggactaca aatcggaaat aaggcattaa attatgttaa agaaaaccgg tgagtgtttt       720
     tcaaattctt attgtttttt attaaatatg tgctagacaa actctgattt ttatcactat       780
     tataaattta gtaggtttga aatttagctg acaactaaga atatatgaaa aaataatatt       840
     tgttgtgtaa atggaaatag acgaaattaa attcataatt gataaaaata tatcagtcct       900
     taattccatc ctagtgaatt tcaacaaggc tccaaatagg acctataata aaaaattcct       960
     aatagaaaaa aagaagcaat cagctgaaat ttgtaattca atcactaatt tgctacaaca      1020
     aaatgaacaa aaattctcgt ctactgaact gtcatattat gtcaaaggtg caagacaaaa      1080
     atacaacaac attactgtta ttttgaacga caaacttgag tttgccgata atcgagcttc      1140
     tagcatacaa acaattgctt tagcgttcat atttttcatt gaattaaaaa caaaatacat      1200
     acaaaggaaa aacatggcta cacaacttga gttagtcaaa attatttcag cattggtacc      1260
     ccaatatgag ggagaaagcg ataaattggc aagcatagta gatgcgttgc atgcggtgga      1320
     tgctttcatg actgatgcaa ctagacaaac tggcattcgg gtcattttgt caaagttttc      1380
     tggaaaagcc agaaatgcaa ttggacaaaa cccgcgaact gtccaagata taatcaatgc      1440
     tcttcagcag agatgtaaat ctactgaaac cccggaaatg ataatagcta agttgaactc      1500
     cactaagcag ttgggtgagg tgtcgaaatt tacagaatcg attgaaaagc taactgcaca      1560
     gttggagaat gcttacatca gtgacaacat tccagctccg acagcatcaa aaatggctgt      1620
     ggttgctgga gtaaaagctc taactagcgg aattaagcaa caagattcaa agatattact      1680
     gaaagcagga cagttttcaa caatatcttc cgctattcaa aaagtgcttg aaaatgagcc      1740
     gagtaccagc caatcaacac aaatgttcgt cacaaacaaa tcagccaaac ctaataacag      1800
     aaacagcaat tacaatcaat ccaccaatta tcatcgtttg aataacaggg gataccgtgg      1860
     cagaggccgt tgtaattaca atgggtatcc caacaacaga tattggcaag gacaagaaaa      1920
     ttcattccgg tccccgaaca actacaacca aagaggacga ggagtaaatc gtggtagaaa      1980
     tgctcatgca tattaccaac aacatttttt tccagcgggc acaaatcaaa ccatacacac      2040
     tacccccgtc ccacaaccac acgtacaaga tcagatcaat gtccaccctt taggccaacc      2100
     gttcgggcag cgtacggaat aaacgtatct gcctctaatt tcgtatgctt gatgattgaa      2160
     gcgtctggca catattgctc cttgatggta gattctgggt ctgacatttc agtcatcaag      2220
     gcacacaaaa tcaaacagaa tcaaatttat tttcccgata ataagtgtaa cattatggga      2280
     attggaaatg gtacaatttc caccctaggc gacacaacaa caaatgtgtt aattgaagat      2340
     tcgactctgc cccaaaattt tcatattgtg gaggatagtt ttcctatacc cacagatgga      2400
     attttgggac gagattttct ttgtaaatat agatgtacga ttgattatga ttcttattta      2460
     ctgtcaataa atattagaga caacttaata gcagtgccta ttactaatca actgggagga      2520
     aattacatta ttccacccag atgtgaagtt ataaggcgaa ttaatgtaca aaatatatca      2580
     gatagtgtaa ccatttcata cgaaatacaa cctggtgtat tttgtgcaaa tggtatcata      2640
     gacaataaaa atacttttat taaaataata aatacaacta atgatacaaa acatatacct      2700
     tgtaatttta taccaaaaat ggtacccctt cataagtacg ttatacatag tttacagaaa      2760
     tcaaaaaaag atgacaaacg aaacgaaagt ttattaaacg aaataaatct agatggccaa      2820
     atggatccaa aaataaagca tacactcgag caattgtgtg tagagttcaa tgacattttc      2880
     acacttaaaa atgatgtttt gtctgtaaat aatttttacg aacaacaaat ttctctccag      2940
     gattccagtc ctgtatacat aaaaaattat cgcattccag aatcacaaaa ggtagaaatc      3000
     gataatcaaa tcaaaaaaat gctggacgat gggataatcc aacattctac ttcaccttat      3060
     aataatccaa tattattggt acctaaaaag tcaggggaag ataaaaaacg gcggttggta      3120
     attgattttc gccaactgaa caagaatata tccccagaca aattcccatt gccgagaatc      3180
     gatgaaattc ttgaccaatt aggacgtgcg aagtatttta caacgctcga ccttatgtca      3240
     ggtttccatc agattccttt gaccaatgaa agcaagaaat atactgcttt ctcttcaaat      3300
     aaaggacatt tcgagtttaa tagattgccg tttggactga atatcagccc aaatagcttt      3360
     cagaggatga tgtcgatagc tttatgcgga cttcctcctc aatgtgcatt cttgtacatc      3420
     gatgacataa ttgtcatcgg ttgttcaata aatcatcatt tttcaaatct tcgtgaagtt      3480
     tttcaatgct taagaaagta taaccttaag ctgaacccgt caaaatgtca ttttttcaaa      3540
     agtaatgtaa cctatttagg gcaccaaata tccaacatgg gaatacaacc agataaatcc      3600
     aagttttcga ttatagaaaa atacccagtt ccgaagagtt ctgatgaaac acgccgattt      3660
     gttgcttttt gcaattatta tcgacgattt gtaccaaatt ttgccgatat ttgtaatcca      3720
     ctaaacaagc ttcttagaaa aaatgcaaaa ttcgagtgga atacagaatg tcaaaacgct      3780
     ttcaatgagc tgaaaaagtg tttgttatca ccaaacattc ttcagtttcc agacttccaa      3840
     aaacagttca ttttaaccac agatgcctct aaagtggcat gtggtgctgt acttgcgcaa      3900
     ttgtatgatg gtgtggaaaa gccaatagcg tttgcttgta aagccttcac taaaggagag      3960
     tctcacaaat caacaattga acaagaatta acagcaatac attgggctgt ttctcatttt      4020
     cgcccgtatt tatatggaag gaaatttttg ataaaaacgg atcatcgtcc attagtttat      4080
     cttttttcga tgaaaaatcc cacatcaaaa ctaataagaa tgagatggga tcttgaagaa      4140
     ttatgatttt tcaattgaat acataaaagg caaatctaac gtcgtcgcag atgcgttttc      4200
     tcgtataccg ctagatatga atgaactaaa acacatgtat gcaattacac gctcaatgac      4260
     cagaaataaa gaaaacccgc caatggtaga gcctcaagta caggagcctg atcaacttcg      4320
     tgtatttgaa gcacttaata atgcggatgc ttacaaatta cccaaattat catttgtgaa      4380
     atatccacag tcaccaaaac ttacaatggt actatctaag aaaaactata aaccgagaat      4440
     aactctagag ttagatctca aatggacaaa tgaaaaacag aaacaaaatg ccttagagca      4500
     catttttaaa atactggaac aacaaattcc agaaatgaat aattcaaggc tggccagcca      4560
     caaaataaaa gcaaatcaaa aaggaattta caacaaaata atggcaattg caaacaatga      4620
     tacaattttt caatacattg atctaaacac attcaaacat attggtaata acatccttag      4680
     ggatattacc gtaatgatat atgaaagacc gaaaatagtt acaaatgaag atgagatatt      4740
     aggaatactg aatctttatc atgaacaccc tttgggaggt catttaggtg caaaccgatt      4800
     atatagaaaa attaagccgc tatttgcgtg gcctaacatg aaaaaacgta taactgacta      4860
     tgttaaagca tgtatgcctt gcaaaataaa caaacattat ccaaaagtga aaacaaaatt      4920
     tgttcagaca actaccccta caaaatcatt cgaaacacta tccattgata ctgttggacc      4980
     atttacctac acagagagag gaaatcgcta cgcattaaca ctgcaatgcg acctttccaa      5040
     atttattata ataatccccg taccagacaa agcttcaact actattgcaa aagcagtgac      5100
     agaaaaatgt attttattat ttgggccagt atcttcgata aaaacagatc aaggtactga      5160
     gtacaaagca gtatttgatg aggtttgcaa actccttaaa ataacgcata catgcgctag      5220
     tgcgtaccat ccccaaacaa ttggatcatt ggaaagaagc cacaaaacat taaacgaata      5280
     tttgaggatt tttaccaatg atacgaaaaa tgattgggat gaatggttgc catattttag      5340
     tttctgtttc aacacaacac catgcgtaga tcatggatac accccattcg aattagtatt      5400
     cggaaaaaca gtaaatttat ttgatgtagc tcgttgcaat aaaccggatc ctttgtataa      5460
     ctatcaatca tatgaaaaag aattgaaatt taaactacag gtagctcatt caaaagttcg      5520
     agaagaaatc atgaaaacaa aaacaaaaag aactatacaa ctcaattcag acattgaacc      5580
     cacagttcta aacattggtg atacagttta tcttaagctc gaaaacaggc aaaaactaga      5640
     tccagtatat tcaggacctt tcgaaattaa agaactaaca aattgtaacg cagtaatttt      5700
     gaatcaaaat aatcagcaga tacttgaagt tcatagaaca cgtctaacaa agtttaagcc      5760
     tttataaata tacagaactt aaattcaaaa attataaaca ttattcaaaa acagaagaac      5820
     acttttcctt ctactaaggg ggaaagagtg tccaaaagaa gaaaaaaaac acaaaaaaaa      5880
     attgaaaaat gaaaacattg tacacaaaca aaatttgtaa aggtaagaac aaagcatacg      5940
     cgaagaatga cttattgtat gtcgtcattc tctttaaggg gaaagg                     5986
//
ID   Gypsy-520_AA-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-520_;
KW   Gypsy-520_AA-I; Gypsy-520_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-308
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-308
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3144-3144 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 308 BP; 95 A; 70 C; 46 G; 97 T; 0 other;
     tgtagtggaa ttttccataa catctttttc ttagtgacaa attataattt cccacgagaa        60
     attataattt gcgcttacct aagcaccaac gtgccaacat ttcgtaacct tgttggcaag       120
     tatcattttg catccgttgc gcggtccaaa ttgaccacgc agcagttatt tacccgcgcg       180
     tgtattcatg ctttattcta atctaaaagt ttgaatgtaa agtcaaaaga gaaataaaat       240
     cattctacgt acaaccagca agtgagtaac ttcatcactc tccaacgtat ccacgtcctt       300
     atactaca                                                                308
//
ID   Gypsy-521_AA-I repbase;    DNA;    INV; 5000 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-521_;
KW   Gypsy-521_AA-I; Gypsy-521_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5000
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5000
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5000 BP; 1666 A; 834 C; 990 G; 1510 T; 0 other;
     tggcgacgac ggatcaaaga tagtagcgaa aaaaattaag taaaacattt tgaagaacgc        60
     gggtgttaag ccgaagtaaa tttgagtgat agttcatttc agttagaaga ccttggcagg       120
     aatctgtgtc ttttggacat acagtacggt agataaccat ttttgttcgc tagtgagcac       180
     tgattgctga atagaacaaa ggcagtgtaa cagtacgtca taaagggacg aatgaccttc       240
     gggttaaagt ccctctcaaa caacaacaac aacagtacgt cataagggcc agtagtctac       300
     aaggccattt tgtagttgat ctggaggccg ggttgaaaag atcagtgtgc atacataaaa       360
     aagaacgtgt actgaaaagt gatcagaacc tcgtgtgctg gttttaattc tgtagaggat       420
     tataagaaga cgtttcctag taaatgtgca tatttcgaat caaatcttct ggatcatttc       480
     cttcgccgca tcagccacgc catctccttc gccccatcag ccagccaaat agcctcctac       540
     gccgctcaga cagccacatc gcctcctacg ccataccagc acgccgccat ctctatcatt       600
     tcgggcacat ttcctggatt cctttttttc ggatcgttta catcgattcg atcgttcgga       660
     gcatataatt tgcattgtgg tttgcttcga aaggtttcat cggttagagc attagaagcc       720
     tgaaagtgtc ggaatcatca aatacaaagt aaaaggtacg tggattttct tttatctacc       780
     tttggatgcc attatttgta ttgctctata aagatctttt gtttctttca ttacggttca       840
     gccataatgg cgctatacgg tacggtcgac ccttatgtgc ccggcacaag ttttgcgaat       900
     tatgtcgagc gtcttgaata ttttttttca tctaatgaca ttcctgatgg tcgcaaaaaa       960
     gacgttttta tgagtttatg tggtatgact gtgtttgacg aactgctttt tccggctacc      1020
     gacctaaaaa ctatttcata cgcggaaatt actaagaagc taaaggaacg atttgataaa      1080
     gtggagtctg agattttatt gagatataaa ttcctgtgca gaaggcaagg tcctagtgaa      1140
     agtggcgaga actttatcct cgcagtgaaa cttttagctg aagcttgtga ttttggacag      1200
     tttcgtgaca ccgctattac agaccaacta gtttttggaa tttatgataa agagttgcag      1260
     cgtcgtttat taaatgaaga tgatttagtg gttagaacag ctgagaagat tattaagagt      1320
     tttgatatgg ctaatgttag gtcccaaact atgaatgaag aaaccggagt taattctgtc      1380
     aaacatcgac ttggcaggaa acccttcgat gaccagcgag atcgtagcag aagcagatct      1440
     agaggtagaa actttttcaa tagggatacg cattcatatt atagtgatag ggaaagagct      1500
     aggtctggac agcgtcaacc aggtcgtggt cgatatgcta attttatttg caatttttgt      1560
     aaattaaaag gacatatcca gaagcattgc ttccgtttta agcagcagag tcaaaatcaa      1620
     aataacatga tcaattttgt agagaaagaa gctgagccag aaaacgtaca cgactacttc      1680
     aagagattga agtttgacta tgacagcgac agcgaggatg aagaaggtga ttatccttgt      1740
     ttaatggttg cttctgcatg tcacaatagc gaaccttgtc tcctagatgt taaattggaa      1800
     ggaaaaaatt gcttaatgga agttgacagt gggtcagcag tttccattat gaataaagct      1860
     gattttctta acaaaattgg aaaagttgaa atgactgaaa gcaggaaaag actaattgtt      1920
     gttaatggat ccaaactgaa aatttttgga aaagctatca taaatgtttc gttaaatggc      1980
     aaattagcgc atttggagct tgtggtttta gatgaaaaac acaagtttac ccctttaatg      2040
     ggtagaagct ggttagatgt tctatgcact ggttggagaa acagtttcgc taatattatt      2100
     catgttaata gtacatctta tgcaagcatt gaagatagat tggtaaatga cataaaatcg      2160
     cgtttttcga aaactttcaa caaagatttc tcctccccta ttaaaagatt tgaagctgat      2220
     cttgtattga aagagaatca acctattttc aaaaaagctt accaagtgcc atataggttg      2280
     aaagaaaaag ttttagatca cttgaaattg ttagaaagag atggcatcat tacacctgtc      2340
     aagactagtt tgtgggcttc cccagttatt gtagtcgtta aaaaagatag tgatataaga      2400
     ttggtaatag actgtaaagt ttctattaat aagattttga tccctaatac ctaccccctt      2460
     cctacagccc aggatttatt tgcttcattg gcagggtgta aggtgttctg ctcattggac      2520
     ttaacaactg cttatacaca gttagaatta tctgaaaaat ctaaggaaat tgtagtgata      2580
     aacactctta aaggtctttt caaatacaat cgacttcctc aaggggcatc atctagtgct      2640
     gccatattcc agcaaataat ggatgaaatt ttaaaggata tagaatttgt atattgttat      2700
     ttagacgatg tcctgattgc tggaaaaaat ctggatgatt gtcataaaaa gttgatgtta      2760
     gtattgaacc gcctggaaga atttaacatc aaagcttttc taaagagtaa gcaaaaactt      2820
     ttagaagcaa atttattgac gttttacgat ccaaaagaaa aaattgtagt ttgttccgat      2880
     gcctcatctt atggcttggg aggtgtaatt tcacacatta ttgatggagc agagaaacct      2940
     atatggttta cttccttttc attaaaccaa gcacaaaaaa cttatccaat tctgcatcta      3000
     gaagctttgg cagttgtttc aaccgttaaa aagtttcata aatttctgta cgggcaaaaa      3060
     tttacaattt ttacggatca taagccccta ataggaattt tagggaaaga aggtcgtaac      3120
     tctatttcag cgacaagact tcagcgttat gcgatggaat tatcaatcta cgactatgaa      3180
     attatttata gaccttcaaa taaaatgtcg aacgctgatt tttgctcacg ctttccacta      3240
     aaaaaagaag ttcctaaaag ttgggataga cattacatta atagcctcaa tttgtctaca      3300
     gatatgccta ttgatcataa aaccgttgca atagaaactc aaaaggataa acttttacta      3360
     atattactcg attatataaa gaacggttgg cctgagcgaa tcgatggatg ttatagaaat      3420
     atttattccc acaaaaatga tcttgaagag gtagatgggt accttatttt tcaaaatagg      3480
     atggtcattc cagcttctct gcagaacaaa gtattattgc ttctacatgc caaccatgtt      3540
     ggcatctgtt aagatgaagc agcaggcgcg taaaaatatt tattggtttg gactaaatag      3600
     cgatattgaa acatttgtgc aaacttgtga tgtttgctta aaaatggcag tggttccggg      3660
     tcaaaacaaa acgtctaagt ggattccggc ttcaagacca tttggcagaa tccatgctga      3720
     ctttttcttt tttgagagac aaacttttct tttagtaatc gacagttatt caaaatggct      3780
     tgaaatctac tgtatgaaat acggaaccga agcaaaaaag gttgttaaga gatttcatac      3840
     atatttctca acatttggat taccggacat aatagttacg gacaatgggc ctccattcaa      3900
     ttcggaatat ttcgttggat ttcttgaaag acagggaatt caagtttaaa aaagcctgcc      3960
     atatcatcca caaagtaatg gccaagccga gcgtttagta agagtaacca aagatgtttt      4020
     aaaaaaaatc atgttggatc ctaaaacaaa acatttggac atggaagata aaattagtta      4080
     tttccttatg acctaccgaa atacttgttt atctgacgag gatgtttatc cggcagaaaa      4140
     agtactatgt ttccgtccta aaacaataat tgatttgata aatccgaaga aatcatataa      4200
     acaacaattg tcaacacaga taactgatac aaatattaga aatccgagta tggaaaatgt      4260
     gaatcttcaa gtcactaaag ataaattagc tactttaaca gcaggggata aggttcatta      4320
     taagaatcct aacactaaaa atattcccaa atggattgaa gctgttttta ttaaacgaat      4380
     ctctcaaaat atcttacaga tttccatcgg aacgcatatc atctcggctc acaaggggca      4440
     ggtgaacata ccacgcaaat ccggacccag gcgtaatgtt acgttccgga tacccagaca      4500
     ccgacgacat ctaccagccg tgactctgaa aataaatatg ttcaagatcc tcgagatgat      4560
     ttgggtcgag aatcgcaacc gatgctcaac agagatagag ccaagaaaag aaagtatggg      4620
     agtatcgatg atgaagattc gttcatggga tttccatcca atgattatgc tccacctcca      4680
     gcaaaatgtg aagtgcatcc aacagtgttg ctatcgaatg aaggcatgca atcgaaaagt      4740
     gaattaagaa gatctaagag actaaagcgt aaatgttcga aagaagaata tatatatttt      4800
     aagtgaaatt ttaattatat atgaaacaaa ttgattagta aaataattga taatagaatg      4860
     gagttaaatt gcatgaatga agtttttaat aatcagttct gaatgatttg ataattgtag      4920
     taagcatttt atcagtttca gtaagaatgt taaatggtct aattttttaa aaatgtattc      4980
     tattttctta aggggaaaga                                                  5000
//
ID   Gypsy-521_AA-LTR repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 25.10, Created)
DT   26-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-521_;
KW   Gypsy-521_AA-I; Gypsy-521_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-198
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-198
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3145-3145 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 198 BP; 67 A; 37 C; 29 G; 65 T; 0 other;
     tataacatat tatagtttca gtgcaggcag taaagttagc tcttcaagct attactccat        60
     tgatcaatat gagttactac caacacccta gaataatacc aaatgagatc ctattgttat       120
     gcaggctata taagcgaagg tcaaataaaa tattgtcctc tttcgacttc ataaaccaag       180
     tgtgtctata ctttttag                                                     198
//
ID   Gypsy-522_AA-I repbase;    DNA;    INV; 3926 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-522_;
KW   Gypsy-522_AA-I; Gypsy-522_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3926
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3926
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 3926 BP; 1219 A; 914 C; 842 G; 951 T; 0 other;
     gtggtgaccc cgacgtgatc taactggact gcagacattg attaacaagt aaggaaacac        60
     acaaataaat acacctgggc gcaactggct gtgtgtcgat ttttttgttt cgtttaaaga       120
     tctccgtttc aattactatc tacacatcga aaattcgcca aggcgcccac aaagcaattt       180
     caaaatggcg gaggaacagc gtttgaagga cgagatcgct catttacacg agcaactgca       240
     ggcagcaaga gcagccgctg caaccaatcc tgccgctggc aacagtagtg ccgctgtaaa       300
     caacgttcct gacggtgcag tgaacaaaat cggtataaaa atcggaccgt tttggaaacg       360
     tgatccgact ctctggtttg cacaacttga agcgcagttt acactgagtc aaatcatcag       420
     agaggatact cgttactacc acgtattagc agctatcgac tcagagatac ttgcatgttg       480
     ttcggacatc atacgggacc caccagcgga cggaaagtac tctgcaatca aagacaggat       540
     catcggagaa tacagttcaa gtgaacaaaa ccgcatgcag cagctacttc gcggatgtga       600
     actgggtgac cggaaacctt ctcagcttct acgtgagatg cgagacctgg cgagagacgt       660
     aataacagac gaaaaaatca ttaaatcctt gtggatgcag caactccccg aaactacgca       720
     agctgttctt aaagtttcag aagctactct tcagttgccg caactcgccg aacaggctga       780
     taagctttcc gatataacta gaacccgtaa tgtatcatct gcaggactta catgggacaa       840
     cagcaaggac tttgacttgg aggaattgcg caaacaaatt tctgacctgt cccttgaaat       900
     tgctgcattt cgtcaagagc gaggaagatc acgtaacaga agtttcagca ggcaacgacg       960
     tactcgaagt ggctcgcttg aacaacatcc gtattgtttc taccacaggc gttttggcgc      1020
     cgacgcgaag aactgtcgag cgccctgtca gttcaaacaa aaaaactagg gcagctgcag      1080
     tcgacgacgg gcgaaagcag cgaggttcga caatcccgtc taatcattca cgatccagca      1140
     acaaattaca aattcctgat cgacaccggt gccgacctat cgattttgcc gtgcaaaaag      1200
     ctaaaaccaa tacctggaat gagtttgtat gccgccaatg gttcccgaat tgctacatac      1260
     ggcactgaaa tatgcaagcc aacatttggt ctacgacgaa actttccgtg gcgtttcata      1320
     ttggcggacg ttacttctcc aatccttggg gcggatttcc ttaaacatta taacttgatg      1380
     gttgacctac gagacgagtg tttgatcgac aaaatgacta acatcaaagc atacggtcaa      1440
     atcaactcga taaatgaagg attttttgga ttaaaaactt tttcctgcag tagcgactac      1500
     ggtggcctat taagtgagtt ctctgacgtc actagaccgc gccttcccaa gcaagaagtc      1560
     aggcatggtg ttaaacatac cattaaaaca gaaggccctc catgtcactc caagtttcgc      1620
     agacttccac ctcgtaaact cgaagcactt cgaaaagagt tgaaattgtt cctcgagctt      1680
     gggtatatcc agccctccaa aagtccttat tctagtcctg tgcaccttgc tcaaaaaaca      1740
     ctccaaaacg gcgatgtgaa atacaggctt gtgggagatt acaagcgcct taatgattcc      1800
     accgttgctg atcgttatcc tctgccccat atctacgaca tttgtcaaac attacgaggt      1860
     aagactgtgt tttctgtggt tgatttggaa cgggcttact atcaaatacc catgcacgaa      1920
     aacgatgtcg agaaaacagc tatcataacg ccactgggtt tatttgaatt tctagtaatg      1980
     cctcctggat tgaaaaactc tggccagaca tttcaaagat ttatcaataa tatatttttt      2040
     gatatgcctt tcgtgattgg gtatctagat gatcttctta tcgcatcgtc atctgaagag      2100
     gagcaccgaa atcatcttcg gtcggttttc gaaaggctaa gagagaacgg tcttcaaatt      2160
     aatgccgaca aatgccagct gggaaaaaga gaagtacgat tcgtaggaca attaatcacc      2220
     accgatggat gcagaacggt tcccgaaaag gtcaatgccg ttgcagagta cccgaaaccg      2280
     aatacagtac aacaactgcg gcgtttccta gcgttagtaa attattatcg acgttttcta      2340
     ccacacgctg ccgaagcaga aataccatta cgtaaattaa taccgtccaa taaaaagaac      2400
     gacaaaacgc tgatcaactg gaatactgaa gctgaaactg cttttcgcga atgcaaacga      2460
     tgcctaattg aagcacaacg ttggattatt acgacccgga cgctcagctg tcacttatgg      2520
     tcgacgcatc cgatttggct gcaggagctg tattacaaca acgatcagac gatacatgga      2580
     aaccattggg atatttctcg gttaaattca gcgaccgtga aagacgttac tcaacgtatg      2640
     atagagaact tctcgccgtc tatcttggtt tgaaacattt caaggatatc atcgaggggc      2700
     gcaatcctgt aatcttcaca gaccataagc cactaacgtt cgctttcaag caagatgtga      2760
     acaaaccaac tccgcgacaa caacgattgc ttaatttcat aagcgaatat acgacagacc      2820
     tggtccatat cgccggtgca gaaaacattc ctgccgacat tctttcccga attgaagcaa      2880
     tttgtttacc atctacaatt gatcacatgg attttgtcag ggaacaggaa aacgacgaac      2940
     agctacaaaa ctggaaaaaa gtaatcccga cattaagagg ttcgaaagct ctcgactagg      3000
     agtgcgatta ctttgtcagc cacaaaaaat cgaaatacca gacgaacgat tcgaacatgt      3060
     tcatatcgac atagtaggac ccttaccgat atgtaaagga atgcgctaca tcttgactat      3120
     gatagaccgc ttcagcagat ggcctgaggc agtggctata cccgacgcga cagcagaaac      3180
     tgtcgcaaga gtttttgttg aagtgtgggt ggcaaggttc ggatcgccaa tgaaaataac      3240
     atcagaccag ggtagacaat ttgaatcgca cttgataaag gaactttcta ttctgttagg      3300
     catagaacga ctacgcacta ctccctacca cccacaagcc aatggaatga tcgaatgttg      3360
     gcacaggccg ctcaaaaccg ctttggaatc ctacaagtca agttggaccg atgctttgcc      3420
     gttagtattg ctcggtttaa gaagtgcaat tcgaggagga tcatccgcat cagaaatgct      3480
     ttacggtacg acaatacgta ttccaggagc tatgatggaa aaaccttcac ttagtggctc      3540
     tacagattca ttcgtacaaa atcttagaga gaaaatgaat tcactgcaac cgcgtccagc      3600
     ttctaataac gacaagcatc gacacgtgta catacccaaa gatataacga cgtgcacaca      3660
     cgtgtttcta aaaaccgaca aagtacgagc tgcattggaa gcacctttca ctggaccata      3720
     cgaggtaatc tcaagaaaca ataagacatt gaccatcatc atcaggagta aacctgtaac      3780
     agtatcagtc gatagagtta aaccagccta cttcgctaag gaacctgatc catcattcga      3840
     tcctagaaca tccgatcgaa taaccagaag tggacatcac gttagattcc ggattcagtg      3900
     agaatttatc taggaagggg gagtac                                           3926
//
ID   Gypsy-522_AA-LTR repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-522_;
KW   Gypsy-522_AA-I; Gypsy-522_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-164
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-164
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3146-3146 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 164 BP; 41 A; 44 C; 27 G; 52 T; 0 other;
     tgtggtgccc agccaatctg ggcacactgt tgactactga gcgcgacaac agaaaatcgc        60
     aaccatcttc agtttcgatt gtaaccttca cttattcgca tcgttaataa atcgctctgt       120
     attgtagtta cttccttctt catcatttca taatccgcac cgta                        164
//
ID   Gypsy-523_AA-I repbase;    DNA;    INV; 8285 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-523_;
KW   Gypsy-523_AA-I; Gypsy-523_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8285
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8285
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 8285 BP; 2534 A; 1570 C; 1843 G; 2322 T; 16 other;
     atggcgatcc atgccacgag ttatttttct tcgcgtttat ttgaatgcca tctgactcgc        60
     aagcgggaga ctttgcaaag tgagatttgt gtgcgtagtt tagtgctaaa tagaagatta       120
     tttatatcct taggtaacaa gtgtgacaga catttcgttg aaactatttt tgtgaccgcg       180
     tgtgaagtga gtggtggttc gagcaagtga aaccggcgtc aggagccgga tagtgattgc       240
     cttggggatc cgtcggcgca gaaaccttgt ggtttcgagg ttagtaaaaa ttgaaaaaaa       300
     ttgaaagatt tggtggattg atggccgtta aacgtaaagc aatcaaagga atttaatttg       360
     gctcaatttt ttttagtata ttaacgccgt aaagaacagg tgtttttggg taaaatttga       420
     ggctgttttt atgaaagatc aacgatttct tcatacataa tcattagcaa tatcgtatat       480
     ggacggttcg aaaccgccat tccttaaatt gccgtcggaa tcggcagtcc atgaaagaga       540
     tagatatatg agcctctcaa cgtgccataa attctcgttg cctttcaatt ctactgtgcg       600
     ccgtgtgttg gtgctgtatc gctctctctc ttttcgttcg ctcatgcaga gaacagcgga       660
     tacactaata cttctgatat acctccacca ttgatgcgag agattcaatc ttctgtggaa       720
     aaacacgatt tgtgtggttt gtttgattca tttgacattt gttttatgct agcagctgat       780
     ggcgcacatg gcgaagcata cacggggggc gttttgatgc atgtttggat aagctttcga       840
     caactgagat taatagtaga attatattgg atttcgtgaa ttgtttgaaa attagcttcg       900
     taccgttttt tcgtgaaaat aaaatccgga atcgttggtt tattatatac aataaacgca       960
     ttgagtcaaa cgatattgat gacaacggag tgtcctttga tattgagcgc tgagttcgaa      1020
     ccagcccaag ccaaattgct tggaattcat cttttatgaa aatcaacact acccaacatt      1080
     cgcactagga gctagtggaa atctaatcat ccagtgttta ttttgtttgg ccggattaat      1140
     cgattcattg attattagtt caaattactt atttcatgaa acagcttgat ttgggaattt      1200
     atacagcgtt atttaattta ttttcacaac cgtttgatag tctacaaaat actggtttgc      1260
     cccgaattga gcaagacgtg gcctacaatt ttcttggtta ttttttagtt aaggtatacg      1320
     gcgttatcga tactacgatt tatgtgtcaa ttttaattat tgcaaacaac agtttcaagt      1380
     ccagattttt gttwgacaat ttacagaagc cgaataaaac agagaacata gtgtctattc      1440
     aaaatcagtt ttccaatccc atttttcaca aatacccaag aatatgaaac tgattgtcag      1500
     ttatgattca ttggctcgat attttctaga cgttcatgaa aattttgtaa catcagttac      1560
     ataagcattg aattaaatag attacaggat ttataagtta ggaatcttat aactaattct      1620
     tgtagatgtg ttgtgaattc ttcagcagct tgtattttgg tgtcattttc twagtaawac      1680
     aaaatgaatc aagacatttc ttgtccaacg atctcaaaga tgagatctcc gactctgcac      1740
     gacaagacaa cctgagagag agagaaatca acgtttcggc tatggttttt gttcagttag      1800
     cctgtatacg ctatctaatt cgaattaggg tcgtacaatg cgcccagatt gaaaagattg      1860
     atcaagaata ataacagata aatttagtgt cagattagct actgttagat cttaacgaag      1920
     ccccgtagaa gaagctttca tttcagatat tttatgcgct ggttcaggat ggccagtagg      1980
     atgattgttc aatttggata attatcaata taatactagc tcgagatgtc tagtcgttca      2040
     tattgtggaa cgaatccttt aactatgctt ggtagggact gccaattcga acatttgtag      2100
     gcgctggatc aggatgacca gtaggatgat tgttcatgtt gaataattat aaatataata      2160
     ctagatcgag acgactagta actagtawtt tggaatgaat ccattaawtg agtttggtag      2220
     ggactgccaa ctcaaacatt tgtatgcgct ggaacaggat gaccagtagg atgattgttc      2280
     atgttgaata attacaaata taatactagc tsgagacgac tagtaactcg taaattggaa      2340
     tgaatccatt aaatgagttt ggtagggact gccaactcaa acatttgtag gcgctggatc      2400
     aggatgacca gtaggatgat tgttcatgtt gaataattac aaatataata cwagctcgag      2460
     acgactagta actcgtaawt tggaatgaat ccattaattg agtttggtag ggtctgccaa      2520
     ctcaaacatt tgtatgcgct ggatcaggat gaccagtagg acgattgttc atgttgaata      2580
     attataaata taatactagc tcgagacgac tagtaactcg taatttggaa tgaatccatt      2640
     amttgagctt ggtagggact gccaactcaa acatttgtat gcgctggatc aggttgacca      2700
     gtaggatgat tgttcatgtt gaataattat aaatatatta ctagttcgag acgactagta      2760
     gttcgtattt tggaacgaat ccatctactg agtawggtag ggactactaa ctcagatatt      2820
     tttttcgctg gattaggatg accagtagga tgattgttca agttgaatga taataaaaaa      2880
     attgcaaggc twgctcgata cggctagcaa ttggtatttc ggaacggatg ccgtacacca      2940
     aacatgstag ggactactaa ttaawatgtc ttatgccctg aatcaggata gttagtaggc      3000
     taattattca aattgtttaa waataggtat aataatagtt tgagatgatc agtagtctga      3060
     tattttgagc caaatgctta tttttttgac gcatattaat agtttgttta gccaagctac      3120
     cgccgttggg tagagacaac tctctctatt ttctattttt atcaacattt gtagagaagc      3180
     gatataatat cgagagtttt gtaacagaag aacaagcgct ctattcaatt gtgagtataa      3240
     taaattcaaa ctaaaaataa aaaaatggta aaaaaaaaat agaaataaat aaataaacaa      3300
     ctcggctaca ttatacttcg aaagcattta tcaagtttwc tagataaaaa kggaaactta      3360
     tggtaacata tattatttac tatatatcaa tcattcttct gtcgagcagt gttggttagg      3420
     aaaataagag aattcatacg gtaggctaca taagtctgag attcgcgttt atcgattgtt      3480
     ttcagatggc tggccaatat gtacgcatgc ctcttcaaga taacccggat gatatggagg      3540
     attcacgatc agaaagtgga ttgagtatta cgggtcccga atccacccag gatgcagcac      3600
     aagcttcaga gcctacggta caggaattcc ccgtacaact gccaaaccaa gaacaatcgt      3660
     caacatggcc aacggatcac cgtttgaaag tactggaaaa ggccatagta gatatggccc      3720
     aaatcatgat agagaaggaa gcgttaagta gaaagccaca acaatgcgac ccaaactggg      3780
     ggtacattag gggagatgcg aatgagaatg gaacatccca gcctgtgtgc tcaacaatca      3840
     gactggaaca acttcgtcca tttccaaaga atgtaccttc caaccggttg tggcaggaat      3900
     ggaggaagta cttagagaac tttgagatcg ccgcatcctt acagcctatt cttgaacctg      3960
     acaagttggc aaaagttctg ttcttggcgg taggggaaga tatgcaggct ataataaggg      4020
     cggcgaaact tcgtcctagc ctagagggtc cggactgcta caacgttttt gtcaataacg      4080
     ttgatgccca tttgcgtact atgtcggaca ccacaacgga gcacgacatg tttctggcta      4140
     tgcgccagga agtcggagaa tcggccgtgg attttcacgc ccgtttggtc gatcgtgcag      4200
     gagcgtgtga ttatgggcag ggatatgagg agcgtttcgt gcgatctcag ttgattaaag      4260
     gattacgaga tcaggagcta gcaaaatcag caataattca cagctacgat acgaatacca      4320
     tagtccaagc agcaacgcgg agtgaaacat acgaacctgt agccggacca tcaagagttg      4380
     aagccgggcc atcaagagct gaagccgtgt tggcgattga tcgcggagct tcttcacagc      4440
     aaggaagtcg taagagacca cacaaccaga atacagaatg gaacagcctg aggcgagccg      4500
     tcaaccacca cggcgccgac actcgcacat ttactggtat cagaaacaac caagccaaca      4560
     aacagcgcgg ttttggtcgc gggaaacgct tcaaatgctc gcgctgtaac cgttggcgtc      4620
     acgaaaatcc ccagcaatgt ccagcgctga aagcaaagtg ttatgaatgc ggtgcgtcag      4680
     gtcatttcgc tacaacatgc cgcaaaaagg gacgaggttc actgagggcc aacaacaacg      4740
     agggaaaggt atcagaagat caggtatgag actgtcgctc ctagatactg ctcgttcttt      4800
     ccttgtttat aacgtttgtt taataaaatt gaattcgttt gtttcatttt aatcacagca      4860
     attaacaatt cgtacattga ccctggaaga cgtattgata gactgcagcg ttggctcctc      4920
     tagccccatt aaattcttaa tcgactcggg tgcggatgtt aatattattg gtggtgccga      4980
     ttggatagtt ctcgagtccg aactggcgaa aggtctagtt catttagtcc cgacagagtt      5040
     tagcgacgga aatactctta cagcttatgc gtctgacgaa ccgatgagtg ttatgtattc      5100
     attcgaatct gagattctcg tgtgtgatac acaaacacta ccactcaaag ccaagttttt      5160
     agttgttccc agtggccgaa ggtcgatttt gggaaggtcg acagctagta acatgggttt      5220
     actacaagta gggctatccg tcaatgcatg cgatgcaagc aaagcactct ttccaaaaat      5280
     gcccggtgtc aaggtcaaat ttaatatcga tcgatcagtc acaccttcca gaaacgctta      5340
     ctataatgta cctgcagcat tccgtgatgc tgcgaggaag cgactcaaag aaatggaatc      5400
     tcagggcatc attgagaggg tccaagaagc tcccaagtgg atcagcggaa tgtccgccgt      5460
     tcccaagggg caaaatgact tccgcctggt cgtcaacatg agggctccca ataaggcgat      5520
     aaagagagaa tattatagat ttccactaat acaagagatg aagataaaat tgcatggagc      5580
     taaatatttt gcaaaactgg acttgaccaa tgcatattac catctggagc taagtaaaga      5640
     ttctcgtgaa ttgacaacat tcctagccga gaatggaatg ttccgcttta cccggctcat      5700
     gtttggagtc aactgcgcgc cagaaatatt tcagcgcgaa atgtgtcgaa ttttggaagg      5760
     tataccaaac gttattgtat acatggatga cattctcatt ttcgctgaca ctctggtgaa      5820
     attgagagct acagtagctc aggtcatgaa aattttcaag aataataacc tgacattgaa      5880
     cctatcaaaa tgtcagcttg atcaagaacg aatcatcttt ttgggtcatg agctggatgc      5940
     tgacggtttc cacattgaag cgtccaaagt aaaacacatc aaacaatttc gacaacctgc      6000
     gacacattcc gagcttcgaa gttttctggg tcttgcttcc tttgtcagtc cctatatcaa      6060
     ggattatgca aatatagccg gccctctttg gagcgtagcg acagcaaaga catttgactg      6120
     gggagaatct caaacaaagg cttttgatct gatcaaagca aggatcacgc actgtacttc      6180
     agccttagga tttttctcag attcggataa gactgtcttg ttttccgatg catcaccaac      6240
     cgcgctagga gctgtcctag tgcaagagaa cagtcaagga gcttcaagag ttataagttt      6300
     tgcttccaag ggtctaacgc ccacagagag aagatatccg caaaatcaaa gagaagcctt      6360
     aagcgcggtt tgggcggtag aatatttctc tttttatctc ttgggaagac attttacatt      6420
     gaaaacggat gcgaaaggtg ttgccttcat gcttgatagg acccgcgaaa attcgaaacg      6480
     tgccctcaca agagcggacg gatgggcact tcgtcttagt ccctacgact acgatatcga      6540
     atacgtgaag ggtcgtgaaa atatcgcaga tccatcttct cgtctgtacg aggggaagga      6600
     tgctcctttt gacgaattta aaagtccgtg ggaaatcgcg tgcctggagg ctaaatctgt      6660
     ggaatttctg acagaggagg agatccgcaa agaaacggct cgggatgaga ctctgcaaca      6720
     agttgaaaca gccttgaaag acaatgaatg gccaatgagt ttgaaaaaat tccaggcggt      6780
     ggaaagcgat ctgcatttcg acagagggat tctaacaaaa aaaggttgcg cagtgatacc      6840
     ttttgtcctt agagcaaagg ctttagaagt agcccataaa ggacacccac aagcagcaaa      6900
     gttaaaaagc atcttgagag aacggatttg gtggccgggc atgtctagcg aagcggagaa      6960
     ctgggttcgg tcgtgttcag tatgctcatt gaatggtatg taataacttt tatatttcat      7020
     atcagaattg taccattcta tttttttcat agggatacct gaaaagccaa ctcctatgcg      7080
     acgcatttta acgccgaagt cggtatggga gacaattgcg atggacttta acggtccgta      7140
     tttgaagttt ggcggtattt caattttagt aatcatagac tatagatcac ggtatataat      7200
     cgcgcagcca gtcaagtcta cgagcttcga atttacaaga aaggttcttg aagatgtatt      7260
     ttctaaggaa ggttttccac gtttcgtaaa aactgataat ggtcctcctt tcaacggaga      7320
     agatttcaag ctatattgtg ccgaacgggg tatccaaacc gtttattcga cgcctctatt      7380
     ccctcaacag aatggacttg tggagaatag tatgaagctg ataaacaggg ccatgtcagc      7440
     agctgtaact gacaaatcta actactcaaa cgaacttcag caagctgtac aagctcacaa      7500
     cgccgcagct cattcagtca cgagggttcc acccgaagag cttctctcag gtcgcaggat      7560
     taggcgtaga ctgccgctac tgaagaaatc ccaagtaaaa cacgatgata atgcgatcaa      7620
     cactcgagac ttcaatgcaa aaacgaaagg taaggaacat gaagacttga aacggggcgc      7680
     ccgagaatgt cgtgttcagc cgggagatac agtagttgtc actcgacaat cacggatgaa      7740
     aggtgactcc agattcttgc ccaccagata tacggttgtt gaacagtgta acggtaatct      7800
     gactctagtg gataatttag gagtacaaat aaggaggcac gttactcaaa ctaagaaagt      7860
     ccacgaatgg agagaacgat cacggattct ggaaaattcg ggacgtcagc caacaccgtc      7920
     atccaacgag ctgaccacag cggagcaagc catcaatcca cagcgaccga tgagacagaa      7980
     gcagattcca agtcacctta aagactacat acactatgta gatcagaagt aacataagat      8040
     gttcgggttc ggtttgacga tcaacattga ggaatttaaa ccattatcac tattacatta      8100
     ttgttattca ttaactagcg ttacgtcttg atcatttcct tgagcaaata aatcttcata      8160
     atcgagattt tcaattttat aacaggcatc tcgaaacaga cttcgggata catttacttg      8220
     aaactacccc atttaatatt gctaaatttg attattactt tttcttttaa tgagaagaag      8280
     ggaga                                                                  8285
//
ID   Gypsy-523_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-523_;
KW   Gypsy-523_AA-I; Gypsy-523_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-235
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-235
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3147-3147 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 235 BP; 57 A; 61 C; 63 G; 54 T; 0 other;
     tgtggggtgt cagtgtaaca acgtcctacc cctggtgtta ttggattgac aactcgtaac        60
     tcgagatcga ttaaccagtc gagcgtcatg atcgattcag cgtccggata tatcgacagc       120
     cggtacgtgt gagcacatcg accggactcg gcctctttcc tcagtcagca gtgaacgaag       180
     caagtcgcgt agagctcccg cttgcgagta ggacggcaaa tagtcagatt ccaca            235
//
ID   Gypsy-524_AA-I repbase;    DNA;    INV; 5138 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-524_;
KW   Gypsy-524_AA-I; Gypsy-524_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5138
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5138
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3115-3115 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5138 BP; 1590 A; 969 C; 1273 G; 1306 T; 0 other;
     tctggcgacg gcggacaaaa ggtaaattct tttccaagtg gaattggaac catataagaa        60
     aggcgtttta cctcaatcaa aaaaaaagaa aagaaaggtg caagacgagc ttctggggga       120
     gaaagaaaat ggccgtagtg tggttggaat ttttttttct cttggaattg acgatagtgt       180
     cttattggaa ttattgaatt gttggtcaga gattcgagaa gaaaaatgac gatatcgtaa       240
     ggtcaattac aaaaagcagc atgtaatagt aaatatatgg tgctcataga atttatcggt       300
     atattaaaag tgaaagtgtc ttagtgcgcg ggggcctaag tgatgtggat ctgagtttgt       360
     tctagagcgc gagggcctag attgagcgaa tttgaatgaa aatgcaatgc atatcttgat       420
     gcacgagggc ttaagataat cgatcaaagt attttcgcta aatgagtaga tacctagtgc       480
     gcgagggcct aggataattc tagagcgcga gggcctagaa tatgaatgag tacatcttaa       540
     tgcgcgaggg cacaagatga aagcctagta gcgagatcgt agattgttct agtgcgcgag       600
     ggcctagagc ttgtgagtaa tcttaatgcg cgagggctta agattaaata tatgtatttt       660
     tttaaagcga aggtattgtt ataatatcta aaaggctctg tttcctaagt caattcaata       720
     ataagggtgc tgaccttatg cagctggtat aattattatt tgctgtattc ggtaaaaaaa       780
     aaaaatagat cacccgacaa tccgtatccg atagtgcctt tttgctacga tttttgctca       840
     cattggaaca ttagaagtgg tcgttgagaa caaaaatgta aattagaaac aaataaaaaa       900
     acaaaaagaa taaatttgag atttttgttt gtgcttgcag atggacgaga gtcgcccaat       960
     tcctatgttc cgttgtgagc aaattgaagg ttcgaagctt gcaaaggagt ggcaagaatg      1020
     gaaaggttct ttgcaatact atttcgattc gtatgagatc accgaccaaa agcttatgcg      1080
     ggcgaaaatg ttacactttg gtggcccgca gctccaaaag gtgtttcgaa ctctagatgg      1140
     aactgatgag tttccattgg tggtggtgca gaaaccttgg tacgatgtag caatcgaccg      1200
     tttggaccag tacttcaagc cacgtaagca agatgtgctg gaacgccata agctacgaaa      1260
     tatcagacaa ctgccaaacg aacgtttcgc ccattacgta cttcgattga gacaacagct      1320
     aatggaatgc ggactcgaaa agtatgcagc cgacgttaga accagcatcg aggagatgat      1380
     gttgatcgac gtcatcgtcg aaggatgcgc atctcaagag ttgcgccgca gaattctcga      1440
     aaaggatcaa tcgctttccg acatagaagc gttgggagca tcacttgaaa gtgtcaggaa      1500
     ccaggagaag gagatgggtg ttgctgaaaa tcgagatcgt cctgctgaag tttacaaggt      1560
     acacgcagct gatagagcaa aattcgaacg caaacctgat cgtattgaaa atcgttttct      1620
     aacacgaccg atcaaaaccg acagagagat gtcaaccagg tgcttcgctt gcggtttagt      1680
     tgggcataca tcgaggagtc caacctgccc cgctagagga agaacatgtc gtagatgtca      1740
     aagcagtgga catttcgaaa aggtatgtcg aaagcgtcca agtcctcgac cttcgaccgg      1800
     accggtgaag aaagttcaag tgattgaaaa cctggacccg ccacaagagc cggtggcaga      1860
     tgaaccagag aaaaaggtat attacacttt ccatgccggt aacaacacga atgcattcga      1920
     ttgcaaaatc ggcggagttg cggtcgaaat gttagttgac tcaggttcgg acgtcaatct      1980
     cataacagca aagacttggg acgaactgaa gcggcaacaa gttcacgtaa ccgaatgtgt      2040
     caagggtagt gagaaaatac tcaaagccta tggtagcgag aaacccttgg acattttggg      2100
     cacgtttaaa gcactcgtcg aagttggtaa acggtcaacc aatgcggaat tctttgttac      2160
     attgaatgga caacgaaact tactcggaga tctgacatct aagcagcttg gaattctgaa      2220
     aattggtgtg gaagttgacc aagttgttga cagtgaaacg acatgtcctg taccgtatcc      2280
     caaaattcca ggaatcaaag ttcacatcgt tatgaatccg gaagcggttc cgatttttca      2340
     acccgtgcgt cgaattccca ttcctttgga aggtgctgtc aacgccaagc tggatgagct      2400
     tctagcaaga gacatcatcg agataaaaag cggaccggcg tcttgggtat cacccctagt      2460
     tgtcgccaat aaagcaaacg gaaccattcg tctatgtgtg gatttgaggc gtgtaaatca      2520
     ggcggtagtc cgtgagcgcc atccaatgcc tgtaattgat gacattatca cgaaaatagg      2580
     aaaaggcaag atatggagcg tgcttgatgt gaaagatgct ttctttcttc tggaacttga      2640
     tgatgagtct aaggatataa cgaccttcat cacacatcgc ggtttatacc gattcaaaag      2700
     attgcctttc gggctggttt cagccccgga aatattccag cgtacaatgg acgaaatgtt      2760
     ggcagattgc gagggtgcgt attggtacct cgatgatgta ggcgtcgaag gcagtacaat      2820
     ggaggagcat gatatgcgtc ttgagaaggt atgaacaaag aaacaatcaa atgaaaaaca      2880
     aaaataaaat aaaaaaactt ggatttatta caattttgtt ttattttttt tgcgttccgg      2940
     ttttaggttc ttaccagatt caaagataag ggagttgttc tgaactggga caaatgtaaa      3000
     atgagggtga ctgactttga attcctaggg ttgaaaatca attctaacgg cttacaacca      3060
     tctgacacga aaagggacgc tgttatgagt tttcgcagac catcaaacga aagcgaggta      3120
     agaagctttc ttggtttagc caattatatg ggaaagttta ttcccaattt ggcagaaatc      3180
     gacgaaccgt tacgaaaact gacacagaaa ggggttgcgt tccactgggg cgatgcagaa      3240
     gaaaatgcgt ttaacaagat aaaattccat atagcaaatg ctgaatctct aggattctat      3300
     agaacagagg atgatacagc tgtaattgcg gatgcaagcc ctcatgcgct tggcgccgtg      3360
     ctgatccaaa ccgataagca aacaagccag tcaagggtaa tctgttacgc atcaaaatcg      3420
     ctcacagaca cggaaagacg gtactgccac actgaaaaag aagcgttagc actggtgtgg      3480
     agtgtcgagc gcttccagaa ttatttgatt ggaaaagagt tcaatttgat tacagactgt      3540
     aaggccctaa cttttctgtt tacaccatca tcgcgcccat gtgctcgcat tgagcggtgg      3600
     gtcttgcgtt tacaaggatt ccaatacaag attgtctata ctactggtcc ttcgaacatt      3660
     gctgatgttt tgtccagatt gtccgtatct gagccaaaag cattcgatga ttcagaagag      3720
     ctgatggttt gtgaaatagt taactctgct gctacagctg tggcgttgaa gtggcatgaa      3780
     atccagaatg ccagtaatac agatgaggtt attggcctga tttttcaagc tctggaatca      3840
     gggatgtctg aacagttatc actaccatac aaaatgattt ttggagagct tagccgggta      3900
     gacggagtac tattaagagg tgatcgtatc gtgattcctc aaagacttca gcaaagagta      3960
     ctgcagctcg cacatgaggg tcaccctggt atgcgcatta tgaagggtca cttacgtgcc      4020
     aatgtatggt ggtcaaaaat ggatgcacat gtggaacagt acgtgaaatc atgccgaagc      4080
     tgcactctcg tgtctgcgcc gaatccacca gaaccaatga ctcggaaaag gctcccttct      4140
     cgcccatggg aacaaatagc catagatttt ctgggtcctc tgcccgaagg agagtatctg      4200
     ctggtttgca ttgattacta cagcaggtat ttagaggtag tagaaatgag agatatttca      4260
     accgcatcta ctatccaaga actgctagca gtattttcac gatacggtat cccagaatct      4320
     cttcgagcag ataacggtcc gcaatttgct tcagaagagt tccgtgtttt ctgcggggaa      4380
     tacggcattt cattggtgag taccataccc tactggccgc aaatgaatgg ggaggttgag      4440
     cggcagaatc gctctattct aaagcgcctt aaaatagctc aagaactcgg acgcgattgg      4500
     cgcaaagagc tgcgacaata tgttttaatg taccattcgg cagcacattc gacaactgga      4560
     aaagcgcctt ctgaacttat gtttggatgg cgactacgtt cgaagcttcc caacgttcct      4620
     gcatttgatg acgtaaatga agacgtaagg gatagagata tgctggaaaa agaaaaaggg      4680
     agagtctacg cagataatcg ccgaaatgca aagcccagtg aaattgaagt cggagataca      4740
     gtgttggcca agcggatgag aaaggagaac aagttgagta cggaatttgc atcagaggag      4800
     tttacggtct tagaaaagaa gggtacagat gtaactatcc gttcatcatc atcgggaaaa      4860
     tcgtataata gaagtgctgc tcatctaaag aagataccga agaccgcgat agatccaacg      4920
     acatttcagg accaacatga gcacgaatcg gtgtatgctg agcccagcac tagcaagaat      4980
     atgacgtcac atcaggctgc tgataagttg ccatctgtcg ctgagaaagt tgccgaaagg      5040
     acttcaaaca ggacaagagc tgagtctagt cgattgaagg attacattac atattgacgg      5100
     aagctattaa atatcattta attattgaag ggtaaggg                              5138
//
ID   Gypsy-524_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-524_;
KW   Gypsy-524_AA-I; Gypsy-524_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3148-3148 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 214 BP; 60 A; 44 C; 51 G; 59 T; 0 other;
     tgtagggacc tacactgaat aaataacata cctcgaatat aatgtacctt ggttttgaat        60
     acaccctacc tgtcattatg aaaaccttgt tccgatctgt cagaggaggg ggattgtaga       120
     cggctacgtg cgggataaga cgtgatagtt gagtgaccgg tgtataccgt taaattccgg       180
     attggatact acggatttgg accactcccc taca                                   214
//
ID   Gypsy-525_AA-I repbase;    DNA;    INV; 4807 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-525_;
KW   Gypsy-525_AA-I; Gypsy-525_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4807
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4807
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3116-3116 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4807 BP; 1517 A; 884 C; 1195 G; 1211 T; 0 other;
     acctggcgac ttggtgggat taaatttgcg aaaaacaaag gtaattatga agatttggag        60
     aaaatgatgt ggtttaaacg atcggcgaag ttttgtggag caattattta attgaaataa       120
     ggaataaatg gaaaagtgtt gaaaaaaaaa atcgaatcga aaaatgacat gcgttctggc       180
     aaaattctgt gagagcttgc tgagagtgaa aaaaaaatgg cggcgtaaga cagagttgcg       240
     ggaatcagta ggattcccca tggaattggc gaaaaccggt aagggttttc catgatgtgg       300
     cgaaaaccgg caagggtttt ccatgatatg gcgaaaaccg gcaagggttt tccatgatat       360
     ggcgaaaatt tgtggaattt tcccggaaat ttagaatgtt tcattagcag gagtaaacaa       420
     aacaaaatgt ttacttagaa gtgcgaaaat cagccggatt ttcaaaaaaa aaaaaaaaaa       480
     aaaaaatagg actgctgcaa atgtgtcaaa gatgatttag acgataaaga cagattaatt       540
     ttgtggatct tgttcatgct ggtgtacaca aagtgttgat aatgtttgtg tttggttcca       600
     tttcagatgg aagaatcacg gccagtgcca ccgttcaggt gcaaccaaat cgagacgaac       660
     aaacttgcca aagagtggag gtcctggaag gagtcactag aatgctattt cgcagcatat       720
     ggtgtaactg accaacaggt tatgaaggcg aaattattgc atcttggtgg accagcactg       780
     cagaccgtgt ttaagaacct gaaagatcgg gatcatatgc cggtggtatc actcattccg       840
     aagtggtatg acgtagcagt tgacaaactg gacgcatttt tcgagcctcg tcatcaaacc       900
     acctccgaac gtcgaaagct acgacagctc aagcagaaat cgggagagag atttgccgat       960
     tacatgattc gattgaaaca acaagcttcg gagtgtggtt tcgatcggta tggatatgaa      1020
     attggtacca ttttgacgga gatctacctc acagacgcgg tggtagaagg ctgcatttca      1080
     aacgaagtgc gtagaagaat tctgctcaaa gatttgccat ttgctgatat cgaagccctg      1140
     ggaatctcac tggaaggcgt ggatcagcag atcgaggaga taagttcgaa cgagacaccc      1200
     cataagattt gtcgtgtggg acagtataag cacgatcgat ccactaaacc gaaggatgtg      1260
     tcaaccaatt tcaagccgat tcgagataaa gcgtgctaca attgtggtag agtaggacat      1320
     gtggctgcat cgccggtgtg tccagctcgc ggaaagcagt gtagaaactg tcaaatcttt      1380
     ggacatttcg agagattatg ccgtaaaagg aaacaaacac ctttctctgg acacgtgaat      1440
     aagcagattc gagcagtaga ggatgagcaa ccgatttcga ccgatggcgg aggtgtcaag      1500
     gatgagaatg gacaggacaa ggtatattat gccttttatt ccggcaacga gtgtaacgtt      1560
     gtaccatgca tcgtcggtgg cgtcaaatta gagatgttgg tcgactcggg cgccgatgcc      1620
     aatttgatca gtaacgcttc ttggaacaat ttaaagcagg aacgggtaca ggtgatgtct      1680
     tccaccaaag gaagtacaag aattcttaaa ggatacggaa gcaatgagcc gctgaagatt      1740
     ttgggctctt ttgtcgcgga aatacaggtt ggaaaatgcc aaacccaagc ggagtttctg      1800
     gtggtcgaaa gtggacagcg ttgcctcctt ggcgacacga ccgccaaaca gcttggcatc      1860
     ctcaaagtag gactggacat taatcgggta aatgctacag cggcaccgtt tactgcaatc      1920
     aagggcataa aagctaccat taatgtcgac cccgatgttg caccagtgtt tcaacctatg      1980
     cgccgactgc ctttgcctct ggaaacagcc gttaacagga aattggatca gctactacaa      2040
     cgcgatatta ttgaaccgaa agaaggtcct acgagctggg tgtccccact tgtcgtagta      2100
     ggaaaagcga atggggatgt tcgactgtgt ctcgaccttc gtcgagtgaa tgaggcggtc      2160
     ttgcgagagc accatcccat gccagtagtg gaagatcata ttgcacgact tggtcgtggt      2220
     acaatctgga gcaaactgga cattaaagaa gccttcttgc aaatcgaatt ggctgacgaa      2280
     tcgaaagaca ttacaacgtt catcacaggg cgaggtttgt ttcgattcaa acgcatgcca      2340
     ttcggattgg taacggcccc agagctcttt caaaaagcga tggacgaaat tcttaccgga      2400
     tgcgaaggag tggcttggta cttggatgac gtcatcatcg aagggaaaga catggaggag      2460
     catgatgctc gtttgaatga ggtaatgtaa taagaaatgt tgattgaata aaatcggttt      2520
     ggattgattc agttgagcta atttattaag aatagaatag aacctaattg aaaaatacga      2580
     ttgtttcagg tgttgtcccg gttcaaaagt cgtaatgttg ctctcaattg ggcaaaatgt      2640
     ttatttagag ttaccgaact tgagttcctg ggacaccgaa tcagcgaaaa aggcataagt      2700
     ccatctgaaa caaaagtcca agctttgtta tcatttcggg aaccccaaaa cgagcaagag      2760
     ttacgcagtt tccttggtct agccaactat atgaataagt ttattccgaa tttggcaact      2820
     atagaccaac cgctgcgaaa gttgctgata aaagatgcta agtttgaatg gtcgaaggat      2880
     caagctgatt ctttttccat gataaaggca gcaatgacca atgttcaaaa tttaggattt      2940
     tacagattag aagaccgaac agcggttatt gcagatgcta gccctcatgg tcttggagcg      3000
     ctgctggtcc aatataacga ggataacgaa catcgcgtgg taagcttcgc ctccaaatcc      3060
     ctgaccgaaa ctgagcgtag atattgtcag acggaaaagg aggcgctggc tatcgtatgg      3120
     gcagtagagc gttttcagtt ttacttgctt ggaagatctt ttgatatact gactgattgc      3180
     aaagcattgt ctttcctttt tgcaacacgc tctaaaccat gtgcgcgaat cgaacgctgg      3240
     gttttgagac ttcagctgtt cgactacaga gtggtgcatg ttgctggtag ggataatgtg      3300
     gcagactctc tctcgcgctt ggcttcattg aaacctgttc ctttcgacgt taatgaagag      3360
     ataatagtca gagaagtgac aatctcagct ctaacttcgt cagcgctttc atggaatgat      3420
     attaaagaag ctgctttatc agaccccgaa actttaaatg ttttgaaatt actggctaac      3480
     ggtgagcaag ataatctacc gatagaatac agagttttgg caaatgagtt gtgtcagttt      3540
     gaagtggtgc tacttagagg ggaccgtata gtagtaccaa gagccttgag agaacgggtt      3600
     ctatctgcgg ctcacgatgg ccacccggga ataaccatga tgaagaatca tttaaggtca      3660
     aacgtttggt ggccgaaaat agattccgat gtggagaaat acgtaaaaag ctgcagaggt      3720
     tgtacgcttg tttcaacacc cgatccacca gaaggaatgg ttcgtagcca gcttccttct      3780
     tatccgtggc atacactagc ggttgatttt ctagggccgt tgccagaggg acaaagctta      3840
     ttcgtggtca tcgattacta ttctcggttt attgaagttt gtgagatgga gacaactact      3900
     tcaaacgacg tgataagaga attggccgtt atgtttggta gatatggaat cccaaatttt      3960
     ataaaagcag acaatgctcc tcaatttagt gctgagtgtg cagagatcaa agagttttgt      4020
     gagtcaaccg gattcaaaat tctgaacacc attccatatt ggccacagtc aaacggagaa      4080
     gtggagaggc agaatagatc tattctgaag cgactccgaa ttgcgcaaga gttgggccgg      4140
     gactggagga aagagttacg cgattatttg ttaacatacc actctacaaa gcatccctcc      4200
     acagggaaat cacctgccga gctaatgttt gggagacgta ttaaaagcaa agtgccatcc      4260
     ataatgattt tcaatgaaga aggtgctgta cgagaacgag acgctgttgt caaagaaaaa      4320
     gggaaagaat atggcgataa aaagcggaat gccaagcaat ccgaaataaa ggagggagat      4380
     gttgtattgg caaaacgaat gcgaaagaac aataaactgg atacgaatta cagtaacgag      4440
     gagtttattg taaaaagcaa aattggaact gatacaatca taaaatcttc aacatcagga      4500
     aaagaatatc gacgaagctc agcgcatctc aaaaaggttt tggatcgtaa tcaggatgat      4560
     caagacgaat gtcctttaag ggaagaagtc gttaagccga atcaaaatgg cggcactaca      4620
     tctgagatag agaaaacctc aacgaacgaa aaacctgaaa atgtgcctcc tagaagaata      4680
     aggaaagttc cgagcaaata tgatgattat atcgctcatt aatgttttga aatggaacct      4740
     ggaattctac aaataaaaga aataaaatat taataatcta caacgcattt tattccaaag      4800
     gggggat                                                                4807
//
ID   Gypsy-525_AA-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-525_;
KW   Gypsy-525_AA-I; Gypsy-525_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-197
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-197
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3149-3149 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 197 BP; 70 A; 36 C; 36 G; 55 T; 0 other;
     tgtagtatat tatacataca cacatttatc acctcgtatc tttgaatata agagtacctt        60
     attatacact accttattat tatctacctt ggttctcatg agattgtatt agtaagaacg       120
     aaaacggaag acaatgaaca aagcacagcg aagggagaaa tcggacgaca ctggtcagaa       180
     gaggacgcgt ttctaca                                                      197
//
ID   Gypsy-526_AA-I repbase;    DNA;    INV; 9482 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   20-JAN-2021 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-526_;
KW   Gypsy-526_AA-I; Gypsy-526_AA-LTR.
XX
NM   Gypsy-526_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9482
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9482
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other. The
CC   sequence 8722-8562 is an insertion of Zator (~78% identical to
CC   Zator-N4_AAe).
XX
FH   Key           Location/Qualifiers
FT   CDS           3042..4145
FT                 /product="Gypsy-526_AA-I_1p"
FT                 /translation="MENGSFVRMHSTMREDNSQNDHNSIMSSMTHLSFASL
FT                 QVPECKPIEGEEEIDRKSYEQWRQMLEASMQLAGVVDETTKMNIFRIKAGH
FT                 KLLDVLESTVSNTESPDIAVYPYSNAVHRLGTFYGSRDYIFMQRQKLRSLA
FT                 QKPGESDVKYVKRVISVAKLCDFGESNVSEQVADTIQCHALNRKVREAGRK
FT                 ILRKGGSLVDLLEKVRALEMEHLNEEMFAKSHRSTQAEVAAVTYGGPRNPQ
FT                 SINHGVRFPRYHQNMQPRFSGNARGNGQGRGFGRREFTRNVTSRVECWRCL
FT                 SRQHQASTCHAVDKICRNCQIKGHIERACHHKPMQRSIKRRNSNADEDATY
FT                 PKKIAIVKKDEEDASEETVSVPMTV"
FT   CDS           join(4449..6557,6448..7620)
FT                 /product="Gypsy-526_AA-I_2p"
FT                 /translation="MSIWCFGRFPRDINSNGMVLGRVAGVEVKFLIDSGAD
FT                 VNTVSGDTFQFLKSNAESKLGMLNIVEGSDRPLKAYATAQEIEVMATFIAE
FT                 LFISDDRPRTMEKFYVVNNARALLGRNTAIRYSVLQIGLDVPVQTVSGFNF
FT                 PGEILALAVNAEFPKFNVAPIVLNYDTSMAPSRRIFTSIPPSLRSETGRRL
FT                 NDLLESGIIERVTDSMDRSYCSSLLVVPKGKHDIRLVVDLRGPNKAIIRTP
FT                 FKMPTLETIMTDLPGRKWFSTIDLTSAFFHVVLDEKSRHLTNFFAGDGMYR
FT                 FKRLPFGLTNAPDTFQEIMQTVVLAGCKGVHNYLDDVLVFGDTKEEHDENL
FT                 RVVMKRLREHNVKINEDKCVFGEQSVKFLGFQLGQDGIRLEEEKLKAIREF
FT                 RRPESQLEVKSFLGLMNFAERFIPCRADKTEKLRELAKSETFFWNDELEDE
FT                 FVFMKEKALSTISKLGYFDIHDDTELFVDASPIGLGAVIVQYNKEGIPRII
FT                 SCASKALTDTERRYPQTQKEALAIVWGVERFTFYLTGKTFVIRTDSEANEF
FT                 IFGEGLKTTKRAISRAEAWALRLQAYDFTMKRVPGYLNVADALSRLISKAQ
FT                 VDEPFDNDDGNNLLYSLDVGCMKITWQDIQLESENDEEIIEVRTSMKSGVW
FT                 PREYSRYAAQEKDLSTLGPLVLKEDKTTSKTATVGSDRSTSRTLGMSGHET
FT                 NPSVPLCLKKTRLPRKLRPLALTEAHQGHLGCPAMKRILRDYFWWPKLSAD
FT                 VEEFVKGCVTCITISKKNPPIPLSCRQLPEGPWEILQVDFLAIPGCGYGEF
FT                 MVLVDTYSRFISVVEMRQIDAKTTNEALQKIFLTWGLPLVLQSDNGPPFQS
FT                 NEFVEFWESRGVAVRKSIPLCPQTNGAVERQNQGILKALTAGRLEGTSWRK
FT                 GLQEYVHVHNTLKPHARLCITPFELLVGWKYRGSFPALWSSRQDQVDREEI
FT                 RERDVTTKFQSKIYADIRHSARPSDIAAGDLVLMAVPRKNKTDPTFTTERY
FT                 TVLARDGAKVVVRSVRGVQYTRNIQDFKKVPATDELDNDEETPENSTHLPA
FT                 QEEVESKDCSPELVQRPKRTIRKPSRLKDMFVYRIYQ"
XX
SQ   Sequence 9482 BP; 3048 A; 1695 C; 2019 G; 2720 T; 0 other;
     atggcggagt caaggatccg aacaacgctc ccttgaaaaa gtaagtgaag ttatcatatt        60
     tttagatttt caaattattt agagcggaag cgaaaactaa aatattgata attgtggtaa       120
     ttctccatta ttctatcaat aatgatagtt acgttaattg tggttttgct agaacattca       180
     aaatggcgtc taccagaaat attttggcgt ccgactgcct accaaaaatt tagtttgtgt       240
     gatcggccac gacaatcaaa atggcgtttt ttttaggtta tgaattttta aaatcagctt       300
     tcatactcgg acaagttaaa aaaaaaaggt gtaagtgcaa atggtatcga acgacttctt       360
     ctttaaaaat taatcgtgta gtcttgtgga acaaaaaaaa ggaatgttag aatgtcaaga       420
     gataaacgaa aatccaacct tagagcgggt tggtgtgtct agtgagagac acgtgacccg       480
     ggtgggtcag aaacaaaata atttcagttc acgaactggt cgatgatttc aataattagt       540
     gcttgacccg ggtagacatg taatacctga gcaggaagta tctagtgaga gacgcatgac       600
     ccgggtgggt cagaaacaac aatttcaatt cacgaactaa tcgaagaatt cattattgaa       660
     tgcttgaccc gggtgggtct taaagtatcc aagtggattg gtatgttcat tgtgagattc       720
     tagatccggg tgggtcagag cacgaaaagt aacacgcttc gatgattgtt ggtgttgcta       780
     tagattagct taattatcta acatcttcaa atccaactgc tgagagtgtc tggaaggcac       840
     aggattcggg tgaatccaaa atttaacctt cgactgggtt gatatgctta tttttcttca       900
     aacattatag aaataccttt gtacctcaat tagtgaaaca aagactctag taaactaatg       960
     gatatagtcg aggacataat agactagtga acagatcaac atggattgga tattgtgagc      1020
     ctgatatttt caatcttttg ttgagttcat ttcattgaat agccaaatga aaatttatga      1080
     atttaattgt gatgtattta tgtatgtatg aacaaaattg ccgcgaattc tgaactaatt      1140
     agcactatgc ttaatatatt gagatctgaa tagactagct taacataggt ttggtatagt      1200
     aagcctgata agtttactat atatgctaat tcttatgtta ggtcttagaa tcaaccgttt      1260
     cgaaattacc caaaaggagt gagagataca acgtaataga atcccggcta aaaaattgtg      1320
     acacaaacaa aatattggca cgctacgttt gttatagatt ggatggcgtc ctagctaata      1380
     aatgtatgtt acgcacactg taggagtgtg cattgaatgt atggtgcctg catcggctaa      1440
     tcttacatat aaaccatatg agcatttatt ttcacacttt aaaaatttgc gcgaaagcct      1500
     attcgtcaat aatagtataa aaaaaacaat acttctgatt gatgcactct ttgaacggag      1560
     ttcaacttta caaatggtaa aatgaggatt tgattttttt tttatgacat caaaatttat      1620
     cgggaccaaa attgttgttt tacgcttttg caatgagcat gataagttca atgcaatctg      1680
     taaaacatat taagatcctg ataaacttat gaagatagac gaggatataa acagaaaggt      1740
     gaacagatca acatggattg gatattgtga gcctgataag tttacaagat tttttttcaa      1800
     tcttttgttg agttcatttc attgaatagc caaatgaaaa tttatgaatt taatgtatga      1860
     acaaaattgc cgcgaattct gaactaatta gcactatgct taacatattg agatctgaat      1920
     agactagctt aacataggtt tagtatagta agcctgataa gtttacaata tatgctaatt      1980
     cttatgttag gtctctgaat caatcgtttt gaaacgaacg tgcaatgtgc agagatagat      2040
     tattcttttg atctatgata ataatgtgag ctaaactgtg accgatacca taacaaaaat      2100
     gtgaactaaa atgtgcagta aaaaaaaggg taatgcttgg aatagtagtt gcatttccct      2160
     catacaatca aaatgttagt tttgtgtatt gcaatgggac tgataagctc gttgttgtta      2220
     gtaaaacgtt aaggtcctaa aaataaatca attcaatagg atgaatcaca aacacttttc      2280
     agcgtattgg ccgtgcgaac caacttggcc atgtggctgt tcggatcggc agttccaagg      2340
     aaaatctatt ggagctgatt aaattcctcg ttggcaacca gccacgtatc attcagcgaa      2400
     attatcgtcg aggaatgctc ttatagatgc tcctctacct tgacgaagct cgtgaacgca      2460
     ttccgtatct ttggccatca gagtctcgcc ctgtaaaaaa atacaaaatt ggttcaatga      2520
     tcgatttaat ttcatttttc tgtgccaatc gctacactat aaagtaacat tttatcccac      2580
     ctccccattt attgcaacga gattactcgc atcttgcatc tattgcaggg ctagtagcga      2640
     ctaagcgtcg agctttagag acctgtctaa aaaaataaag ggaaatattg taagccttat      2700
     aagttaacat gatttactat acctcgtgaa agatctagat attttataaa aaatagattc      2760
     tccaaatatg tttcaacttt atgaagattt tgggccatat aatagttaca taattaatag      2820
     catagcgtgc atgctagtta agatgttatg atgactgttt ttaacaaaag tgaattgatg      2880
     gaaaaattcg atatttttta ttttatagaa aaattaccag acaaacgact aaagactcct      2940
     ctgtattgct caaagagtta gacgatgaga ggaagcgcaa tgcctcgctg ctaatcaagt      3000
     taaaaaaagc aagggctaat aacaagcttc tggagcagtc tatggaaaat ggaagttttg      3060
     tacgaatgca ctccacaatg cgagaggata attcacaaaa cgaccataat tcgatcatgt      3120
     catcaatgac ccacttgtca ttcgcctccc tccaagtacc agagtgcaaa cctatcgaag      3180
     gggaagagga gatcgatcgc aaatcctacg agcaatggag acaaatgctg gaagcgtcta      3240
     tgcaactggc cggtgttgtt gacgaaacaa caaaaatgaa catcttccgt atcaaagcgg      3300
     gtcataagtt acttgatgtt cttgaaagta cggtatctaa cacagagtct ccagatattg      3360
     cggtttaccc gtattcgaat gcggtacatc gcctgggtac attttatggt tctcgcgatt      3420
     acatatttat gcagcgacag aaacttcgat cgttggctca aaaaccagga gaatcagatg      3480
     taaagtacgt aaagcgtgtc atttcggttg ccaaactctg cgattttgga gagtctaatg      3540
     tatcagaaca ggtagcagac acaattcagt gtcatgctct caaccgaaaa gtacgtgagg      3600
     caggaagaaa gattctcaga aaaggcggat cattggttga tctgttagag aaggtgcgag      3660
     cactcgaaat ggagcacttg aacgaagaaa tgttcgccaa aagtcaccga tctacacaag      3720
     cagaggttgc ggctgttact tacggaggac cgaggaatcc gcaatcaatc aaccacggtg      3780
     tcagatttcc aaggtatcat caaaatatgc agccaagatt ttccggaaat gcaagaggca      3840
     atggacaagg aagaggtttc ggccgtaggg agttcaccag aaatgtaaca tcgcgtgtcg      3900
     aatgctggcg gtgcctcagc agacaacatc aggcttccac ttgtcatgcg gttgacaaaa      3960
     tttgtcgtaa ttgtcagatc aaaggccata tcgagcgagc gtgtcatcat aaaccgatgc      4020
     agagatctat caaacgtcgt aacagcaacg cggacgagga tgcaacgtat ccgaagaaaa      4080
     ttgcgatagt gaagaaggac gaggaggatg catctgaaga aaccgtaagt gtacccatga      4140
     cggtatagtt atttttattc ttgttcgtgt tgatatcact gagattgttc aatacgaatc      4200
     atttttttct caaactcatc aatcttaatt tggatggctt attcaaatta aagccccctc      4260
     tcgtttaaag ttgaattcga aataaataaa tgagtggtaa aattcatgtt tattttattc      4320
     tacgtgggtt ataggaggat ataccatcta aaccaacggc ggaaccaagc aaggatactg      4380
     ttaatgtacc ggttgataat cgaactcata agagtagcga tacagcaagt catgaggacg      4440
     attttgaaat gtctatttgg tgctttggaa gattcccccg agacatcaat agcaatggaa      4500
     tggttttggg acgcgtagct ggagtagagg ttaaattttt aattgactcc ggcgcggatg      4560
     tgaataccgt cagcggtgat acatttcaat tcctaaaaag caacgctgaa tcaaaactcg      4620
     gaatgttaaa cattgtcgaa ggcagtgata ggccactcaa agcttatgcg actgcacagg      4680
     aaattgaggt aatggcaaca tttatagcag aacttttcat tagcgatgat cgtccccgca      4740
     ccatggaaaa gttctatgtg gttaataacg cacgggcgtt attaggtaga aataccgcca      4800
     ttcgatacag tgttttgcaa attggactcg acgttccagt acaaactgta tcaggtttca      4860
     atttcccagg tgaaatttta gccctggccg tcaacgctga gtttcccaaa ttcaatgtgg      4920
     ccccaattgt tctgaattac gatacaagta tggcaccttc tcgaagaata ttcactagca      4980
     taccgccatc gctgcgatct gaaactggac gacgtcttaa tgatttgttg gaatctggaa      5040
     taatcgaacg tgttaccgat tcaatggaca ggtcctactg ctcatccctg ttagtcgtcc      5100
     ctaaggggaa acacgacatt cgattggtag tcgatttaag gggtccgaac aaggcaatca      5160
     ttcgtactcc gttcaaaatg cctacgttag agactattat gactgatctt cctggacgaa      5220
     aatggttctc gactatagat ttgacgagtg cattttttca cgttgtactg gacgagaagt      5280
     caagacattt gacaaatttt ttcgccggag acggaatgta ccgcttcaaa aggttgccat      5340
     ttggacttac aaatgcgcct gatacatttc aggaaattat gcaaactgtg gtactggcag      5400
     gttgcaaggg tgtccacaac taccttgatg acgttttggt atttggagat acaaaagaag      5460
     agcacgacga gaacctgcga gtcgtgatga aaaggcttcg tgaacataat gttaaaatca      5520
     acgaggataa atgtgtgttt ggcgaacaat ccgttaaatt tcttggtttt caacttggtc      5580
     aggatggaat aagattggaa gaagaaaaac tcaaagcgat tcgagaattt cgaagaccgg      5640
     agtctcagct tgaggtgaaa agttttctag gcttgatgaa ttttgcggag aggtttattc      5700
     catgcagggc tgacaagact gaaaagctta gagaacttgc caagtcagag acgttcttct      5760
     ggaacgacga actggaggat gaatttgtat tcatgaaaga gaaggccctt tctactatct      5820
     cgaaactcgg atattttgac atccatgatg atactgagct ctttgtggat gcgtctccaa      5880
     taggacttgg cgctgttatc gtccagtata ataaggaagg cataccaaga ataatttctt      5940
     gtgcatcgaa ggcgctgact gacaccgaac gtagatatcc tcaaacgcaa aaagaggcgc      6000
     tcgctatagt gtggggagtc gaaagattta ctttttactt gacgggaaaa acgtttgtga      6060
     ttcgcacaga ctcagaagca aacgaattta tttttggaga aggtttgaaa acgactaagc      6120
     gggcgatatc cagggcagag gcttgggcat tgcgattgca agcttacgac tttacgatga      6180
     agcgggtccc gggctaccta aatgtggctg atgctttatc tcgcctgata tcaaaagctc      6240
     aagttgacga accgtttgat aacgatgacg gaaataattt gctatattca ctggatgttg      6300
     gatgcatgaa gataacttgg caggatattc aattggaatc cgagaatgac gaggaaataa      6360
     tagaagttcg aacatcgatg aagtcaggtg tatggccaag agaatattct cgctatgcgg      6420
     cgcaagagaa agatttgagc acattaggtc cccttgtgct taaagaagac aagactacct      6480
     cgaaaactgc gaccgttggc tctgacagaa gcacatcaag gacacttggg atgtccggcc      6540
     atgaaacgaa tccttcgtga ctatttttgg tggccaaaac taagtgcgga tgttgaagaa      6600
     ttcgtcaaag gttgcgtgac atgcataacg atctcaaaga agaatccacc aattcctttg      6660
     tcatgtcgtc aacttccaga agggccctgg gaaattctcc aggtggattt ccttgctatt      6720
     cctggttgtg gatatggcga atttatggtt ttggtggaca cttattctcg ctttatctct      6780
     gtggtagaga tgaggcaaat cgatgcaaaa acaaccaacg aagctttgca gaagattttc      6840
     ctcacatggg gactgccact tgtgttacaa agtgataacg gccctccctt ccaaagtaat      6900
     gaatttgtag aattttggga gtcgagaggt gttgcggttc gaaagtccat tcccctatgc      6960
     cctcaaacta atggagcagt agaacgccaa aatcagggaa tattgaaggc tctgacagca      7020
     ggaagattgg aaggcaccag ttggagaaaa gggctacaag aatatgtaca cgtacataac      7080
     actttgaaac cacacgcaag actctgtata acaccatttg aactattagt cggctggaag      7140
     tataggggat cttttccagc actatggagt tcaaggcaag atcaagtcga cagagaagaa      7200
     attcgcgaac gagatgtgac aacgaaattt caaagcaaaa tctatgctga cattcgccat      7260
     agcgcgagac catctgatat tgcagctggc gatttggtac tgatggctgt cccgaggaag      7320
     aacaaaacgg atccgacctt tactacggaa cgctacactg tcttggctag agatggtgcg      7380
     aaggtagtag tccggagcgt cagaggagtg caatatacac gcaacattca agacttcaaa      7440
     aaagtaccag caactgacga attagataac gatgaagaaa ctccggagaa ttcaacacac      7500
     cttccagcac aagaagaagt tgaatcgaag gattgttcac cggaactggt acaaaggcca      7560
     aagcgtacaa tccgtaagcc tagtcgattg aaggacatgt ttgtgtatcg tatctaccaa      7620
     taacggcagt atcgcgttct acgcagttga tgacattgtc cacttcgaag acgtaccgag      7680
     gtgatcggaa ttagcattag tattcgagat ataactcacc aacacagctg tttattcgta      7740
     tcacgggctt aatactgact gctataggaa ggcggaagtg ttcacggtag ttttgttatc      7800
     ggtagccata gccgtgcatc attttgatcg catccagcat tgcgaatttt gtattttttt      7860
     ttttgcgaga tcgcaaacca gtggaatgat tcctttcatt gttgctaata aatctcatcg      7920
     aagccacagt agaaataatg ttgttacatc attgactaat ctaaaattaa gttaagcatt      7980
     cagcattcgg ttagtttttt gatttattca cttaccttga tagtgagaat atatagttca      8040
     ttgatatcgt agagccataa ccaaaaaaca tctccactca gatgttccgt tctatcgagc      8100
     tgtaaagggg ttgtggaaca gtttgcaaga agaggggttt tgttgggcat ctcgcaagtt      8160
     tttggtttgg ttttcaataa tcaaatttag atcattgcaa attagttttt caattgcaat      8220
     tcacttgtgc acttgtggtt gaactaaaat ataataacaa actccttagc gaaatgacag      8280
     gataaaagtg ccaccttgcg ttggttacga gaattattca aatcaagagt aacatttcaa      8340
     aagggcatat taaaaaatga cacattggta agagcaacat ttcaaaacgg catatttata      8400
     attattcaca gtatacactc ggagaaatat tggaatccat attaaaaacg tcacgatttc      8460
     ttagtggatt gatttgttcc taaaagatcg ttggtgcgaa aactatatgc accacgcata      8520
     acaaggctat acgtgaggac attttgcgat ggtgcataca agggcttgtt catatatttc      8580
     atatcgctta aattggccat tttggcaccc accccctcgt gacgtttttt gtattgatga      8640
     tctacaattt ttgtatgagc cgtaacaacg tttggatacc tacccacccc ttaaagcatt      8700
     atgaaaaaaa gtgaatgggc ccccaggata aacactcttg aagtgtgcac gacaatgtaa      8760
     ataaacaacc ttgcaagcga atgctatcaa accatacaat ttcctttgta atctaacgat      8820
     aactccgatt taagaacgta aaaaaaacat atgataacaa aagagccaat taaacgtagt      8880
     tgtctcatgg atcatcttct atatattttg ttaccctaaa ttttagttta aagcatttaa      8940
     ttttacttca cagtttgatt gattcgtttc ttcaggaaaa gcattgtcga aaacaaagag      9000
     aaacgcatcg gcgcattttt ggaggttcgt tataatgaaa tcacagagaa agcaaatttg      9060
     ctgacattat tcaaagaatt gatatgacca cttaaaataa tgtaggaaga ccataatatc      9120
     cactttataa aacaacattc ttcacaaaaa aagaacataa ttgagagcaa gttgagagtt      9180
     gagaaaatat gtgctctaca caaataaata ttttgacctg ccagttgttt tcgctcttgt      9240
     gtattaaaca ttaggcttaa acatttaagt gcggatagtg ctgcaatacc gttcacattg      9300
     tatttatttt aacctcaatc gttattttta cataaataaa ataataaaat tagccttggg      9360
     actttcatgt tttcattatt tataaacgaa cagagataac gatgaagtgc aacgaaaatc      9420
     catcattttt acaaattttc tataaatttt tgaacagttt tgagagtagg ggtgagagaa      9480
     ga                                                                     9482
//
ID   Gypsy-526_AA-LTR repbase;    DNA;    INV; 510 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-526_;
KW   Gypsy-526_AA-I; Gypsy-526_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-510
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-510
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3150-3150 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 510 BP; 204 A; 71 C; 92 G; 141 T; 2 other;
     tgtaggtatt ataagtataa acaaaaaaaa aaagaaattt aatataaata aaacaattat        60
     tgaatgtagg tattataagt aaagaawaat gaaataaaat ataaatgaat caattattgg       120
     aaataaaaaa taaaagaatg aattattgga catattgttt aagtacagaa ctgatatgaa       180
     tagaccttca caacaatttg aaatttgaac tagtctaaca tatacgaatg aaagcttttg       240
     atgataataa gctcttccat ttcaattagc gaaaaagctt tatgacaaca gagctgaacg       300
     gaagtcactc gtcagatttg ttgagagtgg tagaaaattc tgacaaaggt acttgcgctc       360
     actctcttca ttcgcactct cgaaaagtgt tagctgcaag caccaatgtt ctaggaggag       420
     aatcagtttc gagaagaact ttctagcgag cggacacaag taaagtgtat cgtgtaaaam       480
     tatcggcttg tgcaatggcc tcacccgaca                                        510
//
ID   Gypsy-527_AA-I repbase;    DNA;    INV; 5571 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-527_;
KW   Gypsy-527_AA-I; Gypsy-527_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5571
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5571
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3117-3117 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5571 BP; 1877 A; 1002 C; 1192 G; 1497 T; 3 other;
     ttggcgcagt cagtagagta aaataaaaaa aaagtgagtt ttctgattgc caaaggcaga        60
     aactcaaaat tgtacatata aagaagtagt ctccgacgga catgggcgga gacgaatgag       120
     cgatttccga tggaaatagg cggaaattcg cgaaaatatt atggtctctg atggacaaag       180
     gcagagaacc gcaaaataga ttctgacgga aatgggcaga aatctaaaaa aaaaatgact       240
     tccgatggca gtcgaaaata gcttgaattc ggacagaaaa taaaatgttg aatcaatgag       300
     caaattaaac agagcttcta gaggtttcca tggaaataac aaacttggcc tgaaaaaaaa       360
     agagcttttg ttgcacactg aactaaaaag tgattcacgt ttcacaaaaa aaaataagaa       420
     tttgatatca ttgtttaaga aaagcctcaa aaataatctg ttgttgcaag atcgttgcaa       480
     atttcatttt attcataata ctaaaaaaaa gtacattata ttaattgtag atatataaaa       540
     gaacaagtga acaaattgtc aattggcaat acgtgataaa tacgacaacg tgtttcattc       600
     agtgtaaact gctgaggcga cgcttcgcgt cgttttgata tatggtttgt tttcctgtct       660
     cttggaaacg taacatagta tgcgcatacg aaaaaaaatc acttcaggca ttcagttgtt       720
     aaggctgtac ataagcgaaa aaaaaaatct aaagatctga tttaagaaaa ataatttcaa       780
     tattggatca tggaaactag aaaattgaag agaaatgggt aagcatttca agattaattg       840
     gagaaaaaaa aatatatata tgattttgaa tttatgtagt gaccagcata cggcttcaaa       900
     aaaggtggct gaggcaggtg aaaaaacggc atcgaaaaaa aggctccaga aagaactaga       960
     agcgtcgaga gcagaaaacg catcactcag ggcacaactt caagagatgg ccaataacgt      1020
     gaatctcgct acatcttctg tgtcggaatt cggtgagcat agtccggcgg cacaatccag      1080
     tgaaatacgc accgagcggc agactgctac atgcgagtcg atgatgatgg cctctatgaa      1140
     taatctttca ttaagtacgc tgagtgttcc ggaatgtaag ccgtccgatg gagaattcga      1200
     agttgacaag caagcatacc tacgctggaa ggacatwttg gaaacatcgt tgaatttaat      1260
     caacacgacg gatgagcaca tgaagatggg aattttcaaa atcaaggcag gcgcaggact      1320
     gttggaaatc ttcaatggaa cagtttcagc tccgggcatg cctgatgaaa tggtatttcc      1380
     ctactcgaac gccatcgctc gcttagacaa ctattatgga tcaagagcgt acttactatc      1440
     acagagaagc aaattgatga acttgagcca attatcaaac gaaggaaaca tacagttcgt      1500
     gcggcgaatc ggtgtcgcag ccaagttatg tgagtacacc agcgatgaag agatggaagc      1560
     gattgcgagg acaattacga maggcaccaa tgacagtact gtgcgtgctc tggcatatcg      1620
     aaactggacc aagcaaggat caatgaaaga tctcatagat atggttcgag atagcgagat      1680
     agaaaaattc aacgaggaag aatttcaacg taagcaaaaa tcggccgtac cggtccaacc      1740
     cgctgtagtt gcggcagttt cgcatcaagg aacaaactct gctcagaaat actatggtca      1800
     gcaaagacaa acaggcagta gcttttgtaa ataatagcag caatgaaatt ttatatcatg      1860
     attaataaaa taaaataaat gcaaatgaac tagttgtaca ataaaacatg attttggttt      1920
     gcaggactgc aaggcaatcg tagctgcaac aacccatatc gaggcgtatc acatttccaa      1980
     gaacagttat aattattcag caatcaacga aaaaggttta aacagagtcc cgttcaatgt      2040
     cggtaaaatt ggtatatctt caaacaaacc ccaatctgaa aacgaagcat tgattcgagc      2100
     tagcgtggca ggtgtggaaa ttctattctt cattgactca ggcgcccagg tcaacaccat      2160
     tacgaaaaat ttcttcgatc ttatactctc taatccagag aatatttata atttaaaata      2220
     tgcaacggat aaacctctaa aggcatatgc ttcaagcagc aatatcgaag ttatagctac      2280
     gttcagtgct atcttattca tatcggatga tcgtccagtg tcgatggaga agttttacgt      2340
     agtgaatgaa atcagatcgc tgttgggttt caacacagct tcaagatata gtgttctggc      2400
     agttggactc aacgttccga ttcgagatac aggtgatcta gcatggccat gcgagcttta      2460
     tgcaccttat attcgttccg tgtcatcaga gaagtttcca atcttcaata tcgcaccagt      2520
     tcgtctacat tataacaaag aaattgctcc agctcggaac atatttacgc atattccacc      2580
     agcgttcaag gataggacaa aacacatgct gcaggaactt ttatcttcag gtattactga      2640
     tgaattcatg gactgcttgt tctgttacgc cttcttagct atatctgtag ttatcataca      2700
     ttcatgtttc attacgcagg tattattgaa gaagtgactg aatctatgga ccgatcgttc      2760
     tgttcctcct tgttggtagt tccaaaagga aaggccgata ttcgtctagt gatcgatctt      2820
     cgtgggccta acaaatgcat atttcgtaca cctttcaaaa tgccaacatt cgagtcaatt      2880
     ctgatggaac ttcatggtgc aaaatttttt tcgaccattg atctttcaag cgcattccat      2940
     cacgtaccgc tggccgaaga ttcccgtcac ttgaccaatt ttttcgctgg agatactatg      3000
     taccgttact gccgactacc cttcgggcta tgcaacgctc ctgatatttt tcaggagata      3060
     atgcaaacag acatccttgc tggctgcaaa ggggtggtta attatttaga tgacgtgcta      3120
     attttcggcg atactaaaga agaacatgac gcaaatcttc gtgagggtaa attcattatt      3180
     gttttacgta agccacacag atttttgagt atattttcca atttcagtta tgcatcggtt      3240
     tgaaaatcac aatgtcaaga taaatcagca aaaatcgaaa atttcacagg cttcagtgga      3300
     ttttcttggg tttactttat catcagaagg ctggagcata gaatcagaga aagttagtgc      3360
     aatcaagggc tttcgaaggc cgcagtcttt ggcagaagtg aaaagcttcc ttggtctgat      3420
     tacatttgtt gagaagttca tatatcatag ggcagacaaa actaaaaatc tgagagattt      3480
     ggtgaagtct gaccagtttt attgggatac aaatttagaa tttgaattca actatctcaa      3540
     agatcaggca ttaaaggcga tcgaagttct aggatattac agtcgggacg atgaaaccga      3600
     gttatatgtt gatgcgtccc cgtatgcact gggggccgtc ttggtccagt atgatagttc      3660
     atacaaagca aggatcattg cgtgttcttc taaagctctt tcggaaactg aacaaagata      3720
     tccacataca cataaagagg cgttggcaat cgtgtgggga attgagaagt tttcaatata      3780
     cctcaccagt aagtttttca ctgtaaggac tgacgctgaa gcaaatgaat ttatatttaa      3840
     cgggcaacac agaattggaa aacgagctgt atctcgagct gaagcatggg ctttgcgcct      3900
     acaaacatac gatttcaacg ttaaaagagt ccctggaaac atgaatattg cagacgcagt      3960
     ttcaagattg gtaattttcg tatttttcat aaaaagataa attatttaag aatatgtttt      4020
     tgcctttatt attagattca acctgtgcca tcagaatcgt tcgatgaaac gcatgagaaa      4080
     catttacttt actttcttga cgtgggcatg atggaaatca catgggacga aattacaatc      4140
     gaagctgaaa tagatgaaga actccaaaaa gtaagaaacg ccttaacttc cggacaatgg      4200
     gaacaaggat tgcgaagatt tgagtccgag gccaagaacc ttagaatgtt aggtcctctg      4260
     gtattcaaag acagtaaaat cattcttcca agaaagctac gcgggaaagc agtgaaatct      4320
     gctcatgaag gccatatggg agcactttct gtgaaacgta ttcttcgtga atacttctgg      4380
     tggccagggt tggccaaaga agcagacgag tatgttaaaa agtgtgaaac atgtcttctt      4440
     ttatcgcata aaaacccgcc aattccattg tccagtcgaa cgcttccaca cgggccatgg      4500
     gagattcttc aaattgattt tttcacggac aaggactttg gatatggaga gttcttagta      4560
     ttagtcgaca cttattcgcg atatctctac gttgtcgaaa tgagaacaat tgatgccgat      4620
     gctactaatc tagctttgag tcgaattttt gaactatggg gatacccatt ggccattcag      4680
     agtgataatg gccccccatt tcaaagtgag aaatttatca agacatggga ggacaaaggt      4740
     gtgaaagtat ggaaatctat tcccctgagt ccccaatcaa acggagcaat agaaaggcaa      4800
     aatagaggaa tcaaggaagc gcttgcggca gcaagaatcg ataaagcaaa ttggaaatca      4860
     gctctggacc gatacgtaca tatgcacaac aaagtaaggc cgttatctcg tctaggggta      4920
     actcctttcg agcttttagt aggctggaaa ttccgtggta catttcctca tctttggaac      4980
     gaacacgaaa ataatctgga tcggtcggaa atacgagaaa aagatgctat gtcaaagttg      5040
     gaaagtaagc aatatgcaga cgagaagcga ggagcaaagc cttcggatat agtggttggc      5100
     gatactgtgg tattatgcag atccaaacga tgtaaaagtg accccacgtt cagttctgaa      5160
     aagtacattg ttattgctag agatggagcc aaaatagttg tttgtagcga ccgtggtgtt      5220
     caattttcta ggaacgttca ggatgctaaa agggtaccag aaggtttaat cacgaactcc      5280
     catgaaagtt gttcaaaatc gagtgatcat caagagcaat gccccatact agaggatgta      5340
     caaagaaggc caaatcgtgc atcgaagaaa ccttccaagt ttaaggacat gttactttat      5400
     acaatattcg gataaataaa aaaaaatagt taagaatttt aaacctgtta aatatgaata      5460
     gagctaataa atatcgttaa aaatatatat attaatatat atgttttatc gccaatgaaa      5520
     agaaacacka atttaacact tcttgaatga aggagtagat acagggagta a               5571
//
ID   Gypsy-527_AA-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-527_;
KW   Gypsy-527_AA-I; Gypsy-527_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-165
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3151-3151 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 165 BP; 63 A; 25 C; 31 G; 46 T; 0 other;
     tgtaaggaag taatggaagt gtattcaaaa aatctgttca gacatcatct tataataagc        60
     aggcttggaa aaactggatg gaaaccaaga aacaagctac cttcagttat tggtctaatt       120
     ttggctcgca aagacgtttt gagaaaatat tctcaaataa ctaca                       165
//
ID   Gypsy-528_AA-I repbase;    DNA;    INV; 4395 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-528_;
KW   Gypsy-528_AA-I; Gypsy-528_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4395
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4395
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 4395 BP; 1230 A; 1012 C; 1128 G; 1025 T; 0 other;
     ttgtggcgac gagtcggttc ggtacgaagt agtgttcgcg tcgtttccgt ggattttgca        60
     tcgaatcgca tcggcacaca aaatggcgat ggcgaaggag gcaaatctcg ccggcatcct       120
     cgagcagatg agccgtttga tggaggcgca aagcattgca cagaaggcgc ttctggaaca       180
     gctcgtgaag ccgaaggata acgagttcct tatggagaca ctatcgaaaa ccctccctga       240
     gttctcctac gatgcgcaga atggagtggt ttttgataaa tggtacgcac gacaccagga       300
     agtgtttaca aaaggaggag ccgccttgga agaagtgctt cgagtgagat tgctcctgca       360
     gaagctgaat tcagtggacc acgaccgcta cgtcaacttc attctaccga ggaccccaag       420
     ggaagtttcg ttcgcggaca cagtaaaaac actgaaggaa atgtttggcc accagacgtc       480
     tgtgtttttc cgtcgattcc agtgtttacg aacacgcaaa cgggactgcg atgattttgt       540
     cacctacgcc agcctggtga acaaagcttg cgaagatttt agcgtaaaca ccatcacagt       600
     ggatcagttt aaatgcttga tcttcgtcgc tggactacac tcggagaaat acaaggacat       660
     tcgaacgagg ttgctggtga aaatggaagg tgaaactgaa gccgacccaa tgaccatcaa       720
     gaagttgttg gagtgtcagc aaatggataa cctcaaacac gacaccgctg ttattgagaa       780
     tccaaaagct gccacgttcg ctgtatgtgg tgcagttcag aacaacgaag cgagaggaaa       840
     acgcacttct aactggacgt cggagaagaa gaagacaatg ccatccaaaa gcccgcgtcg       900
     accgtgctgg cagtgcgggc aaatgcactt tgttgctgat tgctcgtata cctcccacac       960
     ctgccgtagt tgcggaaatg tcggacataa ggaaggatat tgtgggtgct tttctaagca      1020
     gacggagtcg acaaatgctg cctctaagcc ggtggcaacc agcagaaaga agaagaaaaa      1080
     ggctaatgcc gggaagaaca cacagcagca gccacaaacg aatagtgttt atgcggtcaa      1140
     cacggccggt gtcatcggcc gacgcaaata catcgaagtt tgtatcaacg gctttccgat      1200
     tgagctccaa atcgattgcg gatcggatta tacgattgtt tcggaagagt ccctaccaca      1260
     gctaggcaat ccggagaaac gtttaacgga tctaaaggtt tcaacagctt cgggcaaacc      1320
     gctgcaactg gattcggagt tcgagtgtca agtaacgttg aacggttcga ccaaacgatc      1380
     ggtgtgctac gtaacgccgg tgaaagggtt caacgtactc ggcagtgatc tcatggacct      1440
     ctttggactg tacgacatgc cgataaattc tttctgcaaa ttggtctcaa cagaggctga      1500
     ttcggagaag tacgctaatg cgctgaaagc gaaatttcca gcggtgttcc aagaagggct      1560
     cggtctgtgc acgaaggcca aggttcaact ttatctgcaa ccgggtgtca caccggtatt      1620
     caaacccagg aggccggtgc cgtttcactc acaacggctg gttgagaagg agctacagcg      1680
     tctacagaac cttggcgtta tcgagcaggt agaattttcg acctgggcag cacccattgt      1740
     tgcagttcga aaggcacaac gtgattcaga tggcgatccg gtagtccgca tttgcgcgga      1800
     ttattctact gggctgaatg cagcactaga ggcgaacaaa tttcccttga agacacgata      1860
     tttttttcga aactggccgg cagtcagtat ttcagtgtgc tggatttatc ggacgcctat      1920
     cttcagatgg aggtgtgcga ggattcacag aagctgctaa cggtaaacac ccataaaggg      1980
     ctcttcaagt acaagcggct tcctccgggt gtaaagtcag ctcctggagc gttccaaaaa      2040
     gtgatcgata acatgactgg tgatctagaa ggaacagaat ccctgctcga cgatttgatt      2100
     gtgtttggca agactcgatc cgagcacgac cggaatctca acaacactct acaacgtatt      2160
     caggagtatg gatttcaact gaggctcgag aagtgcaagt ttggtgtgac tcaggtaaaa      2220
     taccttggac acatcatcgg tcgtgatggt ctacgcacag atccggaaaa ggtggcagcg      2280
     atctcccaga tgccccaacc caagaatgtg acggagctga aatccttttt gggtgccgtt      2340
     aattattatt caaagttcat caaagaaatg caccttctgc gaaaaccttt ggaccaattg      2400
     ctacaaaaag acaagcaatg ggcgtggacc gatgaatgtc aacgttcgtt tgtgcgattc      2460
     aaggagctgt tacaatcgaa cctgatgctt acacactata atccacacct gcagattgta      2520
     gtggcagcgg atgcttcgaa cacaggcatt ggagcgacca ttcgacaccg gttcccagat      2580
     ggcacagaaa aggttattca gtacgcgtca agatcattga caccaacgga gcgcgcatac      2640
     ggacagatcg acaaggaagc tttggcacta gtctatgccg taacaaagtt ttatcgaatg      2700
     atcctaggac ggccattcat tctcgaaaca gatcaccaac ctcttctccg catatttggc      2760
     tcgcacaaag gaataccaac acacacgtcg aatagattgc aacgtttcgc tctgacaatg      2820
     ttgtgctatg atttcaaaat tgaatacgtc agtacaacga agttcggata tgcggatatt      2880
     ctctcaagac tgattagttc agcgtcgaaa ccggaggagg actatatcat cgcttcggta      2940
     atgttggaag aggatctact agctgttctg gaaaattcgg tcgggaacat tccagttaca      3000
     gccaagatga ttgcgaaaaa tacaaagcaa gacggggtgc ttcaacgtgt agttcagtgt      3060
     attgatagtg gctggtcaac agaagtcaac gatccgaagt tgaaggcgtt ctacagccgg      3120
     aaggaaagct taacggtagt tcagggttgt attctgttcg gtgaacgcgt agtggttcct      3180
     cagctctatc aaaggcgaat tttgcagcga ttgcaccatg gacatccggg cattgttcgg      3240
     atgaagtcat tagctcgaag ttttgtcttc tggcccggga tcgatggaca gattgaatca      3300
     cttgtgaagc aatgcaagga ttgtgcgtca gtggcgaagt ctccagctca tgctacaccg      3360
     gaagcatggc caactccatc tggaccatgg cagcgtctgc atattgactt tgcgggaccg      3420
     attgatggac tctggtttct aataattgtt gatgcattct ctcgctggcc ggagatctac      3480
     acgaccaaaa caactactgc gaaggctaca atacagtttc ttcgaagcac attcgcacga      3540
     ttgggacttc ctttgacgat tgtttcggtc aattctccac aattcacttg cgaagaattt      3600
     aaatccttct gcaaggtgaa tggcatcacg cacttactca ccgcccccta ccatccgcaa      3660
     tccaacgggc aggcggagcg atttgtagac tcgatgaagc gggcgctcaa gaaaatcaac      3720
     aagggagaac ccctccagga gacgttggat gtatttctgg ctacgtatcg ttcaacaccg      3780
     tgcggatcca ctggacaaaa atcacccagt cagatgatgt tcggcagaca aatgagaact      3840
     acactcgacc tactgcgacc agtgaacaaa tcaccgaaca ttgatgagtc cgtaaaataa      3900
     gacaacgtta agcatccgag acagttcaac gttggcgact tggtgtacgc caaggtgcac      3960
     aaatgcaacg attggtattg ggaagcaggc aaggtcattg aaagggttgg agtggtgaat      4020
     tacaatgtct ggctacaagg acaacgatgc ggtctaatca ggtctcatgt caaccaactt      4080
     cggccacgac atgttgcagt ggaccggaat ggaaatgaag agtgtttggc gaatgaagct      4140
     ttaccgttgt cagtgctttt ggacgaattc aaaactgatt cacgagcaac cgtggttgaa      4200
     ccggatgttc gtgagcctca acatgttcaa ccaattgagc accgagagca acaattacct      4260
     gttgcaggcc aggatcgaga gttaccatca caagctgtta atggaagccg cattcccgtg      4320
     gctaccactt ctcgaggacg acaaaatcga cttcctccaa ggtttgaaca ctatgttatg      4380
     ccctgaagag ggaga                                                       4395
//
ID   Gypsy-528_AA-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-528_;
KW   Gypsy-528_AA-I; Gypsy-528_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-212
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-212
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3152-3152 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 212 BP; 67 A; 38 C; 37 G; 70 T; 0 other;
     tgctatagca ccacctaata ttaaactacc ttggtgctag agagtagatg tcattgcaac        60
     caacattttg ttatgattga tttccgcttt tcagtgagtg agtgagcaac caagttgcct       120
     cgtgaaaata actttatatt cagattaaag taaataaata taattctaag ttgttcctgt       180
     aaaccgccgt gttttattta cgggacacaa ca                                     212
//
ID   Gypsy-529_AA-I repbase;    DNA;    INV; 5006 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-529_;
KW   Gypsy-529_AA-I; Gypsy-529_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5006
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5006
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3118-3118 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5006 BP; 1467 A; 964 C; 1290 G; 1284 T; 1 other;
     ttctggcgac gaggattcaa caaaggagtc atggtatgtt attggaagga cgctgattgc        60
     attatatttt gtgtgccgat tttcctctga aaggaatgca gatatgtgtg aaaaaaagat       120
     ggccgatcag aaagctgaaa atgactggta tgagagtatt agtgcataaa ggctgctgtt       180
     gcagggtgcc agtgtatagc caaaggacag tacgacagtg aaacattgaa acagtgaatg       240
     atgactattt tgaccgtggc ggagtgccgg tcgaagtgat gattgttttg atcgtggcgg       300
     gtgccgattg aagcgttgac tgattttcga tcgtggcggg gagccggtcg gagtgatata       360
     gtttgactgt agcagggagc cagttaaaat catgatggtt ttgaccgtag cggggagccg       420
     gttaaagtta tgatagttcg actgtagcgg tgagccagtt gaagcgatga ttgccttgac       480
     catgacgaag agccggtcga agtgttgaat tttgattgtg gcggggagcc agtcaaagtg       540
     ttgatttgtt ttgttcggat cgatgccgat aaaaaaaaca aaaaaaaatg tttttagtat       600
     tgcagatgat cattcgaaga tattactgat agttaatgtg aacgctagtg gaaggaatat       660
     tgcttatttt tggcatgttt ttattgattc agttggtatt gtttaccatt ttactttaat       720
     tattgtttat gccaaatgtc aatgtcaaaa gaatgatgaa agaacataag tgatagagta       780
     ctaaacaaac aacgcgtttt tgtaaattcc agatggatga aagtcgcccg ttaccgatgt       840
     tcaaatgtga gcagatcgaa agcggaaagc tggcgaatga atggaaagag tggaaatgcg       900
     cccttgaatg ctttttcgat tcctaccaga tcacggatga gaaaatgaga cgtgctgaga       960
     tgctacatct aggcgkacct cagttgcaga aggtattcag aagcctggaa ggaacggaag      1020
     attttcctat cgttttattg gagaaaccgt ggtacagcag agcagtggaa tgcctagatg      1080
     cgttcttcaa acctcgcaga caggaagtgc tcgagcgaca taaactccgg accatgaagc      1140
     aaggtatcaa cgaacgattt tctgcctata ttctacggtt gcgccaacaa ctcgccgact      1200
     gtggactgga taaataccct aacgaagtgc gtacggcgat tgaagagatg atgctaactg      1260
     atgttatcgt cgagggttgt tcgtctcatg agctccggcg tcgcatcttg gagaaggacc      1320
     agtcccttgc tgatatcgag gccttgggtg tatcattgga aagtgtgcga tctcaagaaa      1380
     aggaaataag cgctggaaca tcacgcctag aaccagttga agtacggaag gttcagaagt      1440
     ttgatgcaaa ccatatggga cgaaacaaga accggatcgt tggtcgattc catgacaagg      1500
     cccgacttaa tggaattgcc gcgacgatct gttattcatg cggccgtcag ggacatatat      1560
     cgaaggatcc gtcatgccca gccaaaggga agacctgtcg tcggtgtgat cgttccggac      1620
     atttcgaaaa agtttgccgc aagcgcccta tctcgaatag caatgtgcaa gcgatcggag      1680
     ttacaccaga tgaaggaaat gctgtcagca aggttgagcc gtcatcggcg ccccaggaaa      1740
     agaaagtgta ctacactttt cacctgggaa acagctctaa tgtgatcgat tgtgaaatcg      1800
     gtggcgttga tatgaaagtg ttcgtcgact cgggttcgga tgcaaatata atcactgcag      1860
     attcttggga tgagttgaaa tccaaacaga tcgaagtcaa cagctgtcgg aagggaagcc      1920
     tcaaaatctt gaaggcgtac ggaagccagg atcctttgga aattttggga accttcaatg      1980
     ccaccattac cgttggtagg cgaacagttc aggccgaatt tttcgtcgta gccagaggcc      2040
     aacgaaacct tcttggagat gcaacatcga aagaactggg cgttctcaaa gtgggaatgg      2100
     atatccatct agtttcggat aaaaacgacc aaaatcttgt tccttttccg aaaattaagg      2160
     atgttcaggt tcacatccag atggacccaa atattgttcc ggtttttcaa ccgctccgcc      2220
     gaattcccat cgccctagag gatgctgtca acaaaaagtt ggatgaatta ctggaaagag      2280
     atattatcga gaagaagatc ggaccggcaa cttgggtctc tcctctggtt gtggccaaca      2340
     aagctaatgg cgaaataagg ctatgcgttg acctacgacg tgtcaaccaa gcagtaatcc      2400
     gcgagcgtca ccccatgccg gtaatcgaag atgtactagc aaaggttgga cgaggcagtg      2460
     tgtggagtac tctcgatgtg aaagacgcct ttttcttact ggaactggac gaggcatcca      2520
     gggatattgt gaccttcatt tcgcaccgag gactctaccg atttaagcgt ttgccttttg      2580
     gtctcgtctc tgctccggag atttttcagc gcacgatgga cgaaatactc gctgattgtg      2640
     atggagcatg ttggtatctt gacgatgtgg gtgtcgaggg tcgtactgta gaagagcacg      2700
     acactcgttt gaataaggta tgattttttg acgtttctac taatattttt ttgttttgaa      2760
     taaatttgaa aaactggaag tactaaacca aacgttttct tcttttttct aaaataatgt      2820
     tgatgtttag atacttcacc gttttgaaga aagaggcgtc gttttaaact ggaacaaatg      2880
     caagtttcga gtctctgagt tcgagtttgt gggatacaga atatctcctc aaggaataca      2940
     accttctgca acaaaattgg aaacaatctt gaaatttcga caacctgtta atgaaagcga      3000
     ggtcagaagc ttcttgggcc ttgctaatta tctgggaaaa tttatacctg acctagctac      3060
     gttagacgag ccgctcagga agttgacaca gaaggatgtc aaattcgtat ggggtgaaag      3120
     ggaagaaagt tcattccagg cgataaaaaa tcacctttcg agtacaaacg ttctcggatt      3180
     ctacaaacct gaagatgaga catccgtgat tgccgatgcc agtccttatg cgctgggagg      3240
     agtactcatt caaaccgacc agtccggaga atcgagggtt atctgctatg cttcgaaatc      3300
     gttgacagaa accgagcgcc gttactgcca gacggaaaag gaggcgctgg cgttagtttg      3360
     ggccgttgag cggttccaaa catatctgat cggaagggaa ttcaaacttc ttactgactg      3420
     caaagcattg acgtttctgt tttcgcacac ttcacggcct tgcgcacgtg tggaacgatg      3480
     ggtgctgaga ttacagggtt ttcaatacac tgtaatttat atctcgggaa aggaaaatct      3540
     agcggacgtt ttctctaggc tcgcaacgga agtggctacg ccgtttgacg aagcggagga      3600
     attcacaatc aatgaaatcg ccgttgctac cgttgcagca atcgctttga aatgggaaga      3660
     gattgttgaa gccagtagac tggatccaga aattcgagaa attgcggaat gtcttgaact      3720
     aggaacggtg gacgcactcc cgttatcgta tcgtacaatc cacaacgaac tttgtttggt      3780
     gaactatgtt ctgttgaggg ttgatcgcat tatcgtacct cagagtcttc gagaacgagc      3840
     tcttgagctt gcccacgaag gtcatcccgg cgtaaggata atgaagggtc atttgagagc      3900
     gtgtgtctgg tggcctaaaa ttgataaaaa tgtagaggat tttgtcagaa actgtcgcgg      3960
     atgttcttta gtggcggctc caaacccacc ggagcccatg ctgagaaaag aactgccttc      4020
     gaaaccctgg gagcaaatag cgattgattt tctgggtccc cttccagagg gtgaaaattt      4080
     gttagtttgc gtcgactatt acagccgtta cgtagaagta gttgtaatga cggatatttc      4140
     gacgaaagca accattgatg aactcgtaac aattttctct cgctacggca taccactttc      4200
     tctgcgtgca gataatgggc cacagttttc atcggatgaa ttcaaaacgt tctgtaatga      4260
     acacggaata caattggtga gcacaatacc ctattggccc cagatgaacg gggaagtgga      4320
     gcgacaaaat cgctctattt taaaacggct aaaaatagca caggagcttg gaaaagattg      4380
     gcgtacagag ttacgtcaat acttgctcat gtatcatgct gctaatcaca ccacaacagg      4440
     aaaaccgcca tctgaattga tgtttggtcg ccgtctgaga actaagctcc caactgtgcc      4500
     attagtttct attgaagatg gagaggttag ggaccgcgac aggattgaaa aagaaaaggg      4560
     aaggcaatat gctgatacca aacgaaaagc aaagccaagt aaaattcatg agggagatcg      4620
     agtgttagtg aaacagaaca ggaagaagaa caaactcagt gtcgattact caccagaatc      4680
     gttcgaggta gttcgaaaaa aaggaactga tgtcacatta cagagcacgt cgagtggaaa      4740
     aaccatcagg agaagcgcag cccatttgaa agctattcca tccagcaatg tgttcactcc      4800
     agattccatg gcaacggttg aaggaagatc cggaagagtt tctgccgaag aaatgacaga      4860
     ccaaggaaga tttgaagatg taagcgccaa ggagcaacaa gaaccaaaga gaacgaaaag      4920
     agccagaacg gaatcgaagc tgttgaagga ttactatact tactgacatt ttggatacat      4980
     tgtttttgtc taaagaaagg gagggg                                           5006
//
ID   Gypsy-529_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-529_;
KW   Gypsy-529_AA-I; Gypsy-529_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-242
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3153-3153 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 242 BP; 82 A; 44 C; 60 G; 56 T; 0 other;
     tgtagggttc atgattatat acatgctcta aaaccacaca tacctctttt actatacacc        60
     ttgaactacc gcatacctgt gaatgtttga gagactttga tgatgatgac agggaaaagg       120
     gagaaaagag aatcaacgga gtggatagca cgcagcggag ataagctgag caattggccg       180
     taaagttcgg ggattagaat attaaaagaa gtattccagg ccagtggacc gggaacccca       240
     ta                                                                      242
//
ID   Gypsy-52_AA-I repbase;    DNA;    INV; 7823 BP.
XX
AC   AAGE02020210;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_AA_;
KW   Gypsy-52_AA-LTR; Gypsy-52_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7823
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020210; Positions   30316   38138.
XX
CC   Positions [4737-5216] - Integrase core
CC   'ACAA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..2340
FT                 /product="Gypsy-52_AA-I_1p"
FT                 /translation="MASKFPSASHLLNDEVDYELKLRNYGEECGKNLESKQ
FT                 RTLRKLLHTDRAEDRDYRSMYSIDQEFDLISSRVNSIAASLAQAYDTKLIS
FT                 RLKHYHLRTQRSNAKTNEAKMMKDSLVKQISELIAAYKPKSPLIPVGGQEE
FT                 SSQDEEETRNRHLKKTVDGQGLDLQSAIETDSNNSHVNLAHKVQNLETQLN
FT                 QMMSLLQQMLAKQEQSDQKQKQPEATEYANRTGTIPKNSRSQGFLPIQTGS
FT                 ALGNGIANVNTGHNFRMNSAGRLRDEAEASHVLDNGQLAQGGHVGSFLQQQ
FT                 DATQQLPDPVGLFQREDQLNNPSVNPPFRFQRGQLAGNTGPGPSGRFSGVA
FT                 QQPDWYNGMRDENYRNSPLRSPSINESLQRENRMQYDRRIEKWNIFFAGTP
FT                 RSPTLEDFIYKVKVLASMNGIPLDSLISHIHLLLRDEASNWFFTYYEANWN
FT                 WYDFETKIRYRFGNPNQDQGNRQQIYERKQLKGETFIAFVTEVERLNKLLT
FT                 NPLSPQRKFEIIWENMQQQYRSKLACFQVNNLDQLIQLNYRIDASNPSLHP
FT                 VGPRHVVNNIEVDSDGESADEEEINELNKRYQRGQGGSRQQQKFGSRSEEA
FT                 TRSPLCWNCRRNGHFWRECKEAKTTFCYVCGNPGTISTICNSHPKRDSSRG
FT                 VTAPQNSGN"
FT   CDS           2616..5600
FT                 /product="Gypsy-52_AA-I_2p"
FT                 /translation="MQYSCTGYVNVPVKFKGITKVIALVVVPEISRELILG
FT                 INFWKAFNIKPMIQNGSNFEEIALIQTANTANTQAETFHFFLHPIETLPTL
FT                 GKLDPDESLDIPGLELPGPSQATPESIETEHELTPDERALLTEVIREFPCT
FT                 AENKLGRTTLIQHEIILREESKPKRQPLYRCSPSIQAEMDKEIERYKKLDA
FT                 IEECSSEWANPLVPVRKSNGKIRVCLDSRRINAITKKDSYPMRDMKGIFHR
FT                 LESAKYFSVIDLKDAYFQIPLKKECRDYTAFRTSKGLYRFKVCPFGLTNAP
FT                 FTMCRLMDKVVGFDLEPHVFVYLDDIVVATRTLSEHFRLLRIVANRLKQAN
FT                 LTISLDKSRFCRKQVNYLGYLLTNEGIAIDNSRIEPILNYARPKCVKDVRR
FT                 LLGLGGFYQRFIQNYSKIVASISDLLRKGQKKFIWTEKAEESFQELKAALV
FT                 SAPILANPDFRLPFVIESDASDNAVGAALVQHIEGEPRIIAYFSKKLSSTQ
FT                 KKYASVEKECLGVLLAIEHFRHFVEGSRFKVVTDARSLLWLFTIGVDSGNS
FT                 KLLRWALKIQSYDIELEYRKGKQNITADCLSRSIETLPLMSLDPEYQDLVE
FT                 QIMKSPQDYRDFKVVDGQVYKFVKSSEGLEDTRFCWKRYPKKLDRESIVRE
FT                 IHDRAHLGFTKTLAAVRERYFWPLMSSQIKRFCQQCVTCQTSKATNVNTTA
FT                 PLKMQRKIAEFPWQFITMDYVGPLPASGKARNTCLLVITDVFSKFVLIQPF
FT                 RQATADSLVPFVENMVFQLFGVPEVILTDNGTQFVSKSFEELLAKYHVTHW
FT                 KTPSYHPQINDSERVNRVLTTAIRATIKRDHKEWANNIQAIANAIRNSVHE
FT                 ATRYTPYFVMFGRNMVSDGREYRHMRDTSEETGSIESNERTKLYSEIRENL
FT                 KKAFEKHSKYYNLRSNADCPKYVVGEKVLKRNTELSDKGKGYCAKLAPKYV
FT                 PAVIKRVIGDHCYELEDDKGKRIGVFNCKFLKKFSLPTSN"
XX
SQ   Sequence 7823 BP; 2468 A; 1483 C; 1733 G; 2139 T; 0 other;
     taattggcgc ccaacgtaaa atcaaacttt atgagtatta tgggaatgtc agtagtgtca        60
     gtgttatgta atgaatgttt agagtccaat gtaatgtaga gtcacagtgc taggttatga       120
     aaatttagtg tgagttaagt tattcggata tttgtgagtt gaggctattt tgtggaaatt       180
     tatttaggaa tcttgcgtaa tacatattgc tattaagttc atgtttgatt atttgtttct       240
     tcatctattt attactttgt ttgtcttaat ttatttattt cattattttt gtatagttat       300
     tacatttggt ttgtgatttg caaaatttct tgaatattct acgtttaatt taacaataat       360
     tacaaaatgg ctagtaaatt tccttccgct tcacatttgt tgaacgatga agttgactac       420
     gaattaaaat tgcgaaatta cggtgaagaa tgtggtaaaa acttggaatc caagcaaaga       480
     actttgagaa aactgttaca tacggatagg gcagaggata gagattatcg ttcaatgtat       540
     tccatcgatc aggaatttga tctgatttcc tccagggtaa attccattgc tgcttcatta       600
     gcgcaggctt atgacacgaa gcttatttct cgcctcaaac actatcattt gagaacacag       660
     cgtagcaatg ctaaaacaaa cgaggcaaaa atgatgaaag attctttagt aaagcaaata       720
     tctgaattga ttgcggctta caagcctaag agtcctttga ttccagtagg tggacaagag       780
     gaatcctcgc aagatgaaga ggaaactcga aataggcatt tgaaaaaaac tgtagacggt       840
     caagggttag acttacaatc ggcgatagaa actgattcaa ataactctca tgtaaatttg       900
     gcgcataagg ttcagaattt ggaaactcag ctgaatcaaa tgatgtcatt gttacaacaa       960
     atgttggcca aacaagagca gagcgatcag aagcaaaagc aacctgaagc aacagaatac      1020
     gcgaatagaa ccgggacaat tcctaagaat tcaagaagtc aaggttttct accaatacaa      1080
     actgggtctg cattggggaa tggaatagcg aacgtaaata ctgggcacaa tttcaggatg      1140
     aattcagcgg gaaggctacg cgacgaagct gaagcaagtc acgtactaga taatgggcaa      1200
     ttagcgcagg gaggtcacgt tggtagtttc ttacaacagc aggatgctac acagcaattg      1260
     cctgatcccg taggtctatt ccagagagag gatcagctca acaacccttc agtgaatcca      1320
     cctttcagat tccaaagagg tcaattggct gggaacaccg gtccgggacc gtcaggacgt      1380
     ttttcaggag tagcacagca gcctgactgg tacaacggta tgagggatga aaactatcgg      1440
     aacagtcctt tgagaagtcc gtctatcaac gagagtcttc aaagagagaa taggatgcag      1500
     tatgacaggc gaatcgaaaa atggaacatt ttctttgcgg gtacgccgag atcaccaact      1560
     ttggaagact ttatttataa agtcaaagta ttggcgagca tgaacggaat tccattagac      1620
     agtttgataa gccacattca tttgttgcta agagatgaag cttcaaactg gtttttcaca      1680
     tattacgagg caaactggaa ttggtacgat tttgagacga aaatcagata caggtttgga      1740
     aaccccaacc aagaccaagg gaaccgtcag cagatttatg aaagaaagca actaaaaggg      1800
     gaaaccttta tagctttcgt cacagaagtc gaaagactga ataagctgtt gacgaacccg      1860
     ctatctcctc aacgaaaatt tgaaatcata tgggagaata tgcaacagca ataccgatca      1920
     aagttagcgt gtttccaagt aaataaccta gaccagctga tacaactcaa ctatcgtatc      1980
     gatgccagca acccaagtct acacccggtc ggaccgagac atgtggtcaa taacatcgaa      2040
     gtggattctg atggcgagtc agcggatgaa gaggagatca acgaacttaa caagaggtat      2100
     caacgaggtc aaggtggttc gagacagcaa cagaaattcg gatcaagatc tgaggaagcc      2160
     actagatcac cactttgttg gaattgtcgg agaaacgggc atttctggag ggagtgtaag      2220
     gaggccaaaa caacgttttg ctacgtttgc ggtaacccag ggacaatatc gacaatctgt      2280
     aatagccacc cgaaacggga ttcttctcgg ggggttacag ctccacagaa ttcgggaaac      2340
     tgaattcgga gtgcgtagac gggaacctta gcattcctct taaatcctct gttcccattt      2400
     cttccaaacc atacaacgat cctttcaaaa gtcttctcga agttaacata cgaacaaacc      2460
     aatgtccaca ggtgagagta gacatatttg gtgtagagtt tgaggcactg cttgactctg      2520
     gtgccggtat tagcgtagcg aattcgacgg atttggttga tcgacatgga cttaaacttt      2580
     taccatcgcc gatcaaaatt tgcacagcgg ataaaatgca gtactcttgt actggctatg      2640
     taaatgttcc agtaaaattt aaggggatta ctaaagtgat agctctagtg gtagttccag      2700
     agatatcaag agagcttata ttgggaataa acttctggaa ggcgttcaat atcaagccca      2760
     tgattcagaa tggttcaaac ttcgaagaaa ttgcgttgat tcaaacggcg aatacagcaa      2820
     acacacaagc agagactttt cacttctttt tgcacccgat cgagacacta ccgacactcg      2880
     gaaaacttga tccggatgag tcgttggata ttcccggact ggagcttcca ggaccatcac      2940
     aagcgacacc ggagtcgatc gaaacggagc acgagttaac accggatgaa agggcgttgt      3000
     taacagaagt aatacgcgag ttcccttgta cagctgaaaa caaactaggt cgaactacgt      3060
     tgatacaaca cgaaattata ctgcgtgaag agtcgaaacc aaagaggcaa ccgttgtatc      3120
     gttgctctcc ttccatccaa gctgagatgg ataaggagat tgagcgctac aaaaagttag      3180
     atgcgattga agaatgttcg agtgagtggg cgaatccttt ggtccctgtt cggaaatcga      3240
     atgggaagat cagagtgtgc ctagactcga gacgcatcaa tgccatcacc aagaaggatt      3300
     cgtatccaat gagagatatg aagggtattt ttcatcgact cgaaagcgca aaatatttct      3360
     cggtgatcga tttgaaggat gcttattttc agatcccgct taagaaagaa tgtcgggact      3420
     acaccgcctt tagaacctca aaagggttgt ataggttcaa agtatgtccg tttggtctca      3480
     caaatgcacc ctttaccatg tgccgcctaa tggataaagt tgttggcttt gacttagaac      3540
     ctcacgtttt cgtgtatcta gatgacattg tggtggctac gagaacattg tcggagcact      3600
     ttcgacttct gcgaattgtg gcaaaccgtc taaagcaggc aaatctcaca atatctttag      3660
     ataagtctcg attctgtaga aagcaggtaa actatctggg ttacctgctg actaacgaag      3720
     gaatcgcgat tgataactcg aggattgaac caattttaaa ctacgctagg ccaaaatgcg      3780
     ttaaggatgt acgccgttta ctgggattgg gtggatttta ccaacggttt atccagaatt      3840
     atagcaaaat cgttgcctca atatccgact tactacggaa aggacagaag aaattcatat      3900
     ggacggagaa agcggaagaa tcgtttcagg agctgaaagc ggcattggta tctgcaccaa      3960
     ttctagccaa tccggacttc cggttaccat tcgtgataga gtccgatgcg tcagacaacg      4020
     ctgttggggc tgcattggta caacacattg aaggtgaacc acgcattatt gcttatttta      4080
     gcaaaaaatt aagcagtact cagaagaaat acgccagtgt cgagaaagag tgcttaggag      4140
     tgctcttagc aatcgagcat tttagacatt tcgttgaagg aagcaggttc aaggttgtaa      4200
     cggacgcaag gagccttcta tggcttttta caataggagt cgactcagga aactcaaagc      4260
     ttttgcggtg ggctctcaaa atccagtcgt atgatatcga gttggagtac aggaagggaa      4320
     agcaaaacat tacagcagac tgcctctcgc gctcaattga gaccttgccg ttgatgtcgc      4380
     tcgatccaga atatcaggat ttagtagagc agattatgaa aagcccccag gactacagag      4440
     atttcaaggt agttgatggg caagtttata aatttgtgaa aagttctgaa ggcttggagg      4500
     acactcgatt ttgctggaag cgttacccta aaaagctcga tcgcgagtcg attgtacggg      4560
     agattcacga tagagcccac ctgggattca ctaaaacatt agctgccgtt agggaaagat      4620
     atttttggcc attgatgagt tcccaaatca aaagattttg ccaacaatgt gtaacttgcc      4680
     aaacgagtaa ggctacaaat gtcaacacaa ctgctccact gaagatgcaa cggaaaattg      4740
     ctgaatttcc gtggcaattt ataaccatgg actatgtggg tcccttacca gcttcgggga      4800
     aggccagaaa tacatgtttg ctagtaatta cggacgtatt tagcaaattt gtgttaatac      4860
     aaccatttag gcaagcgact gcggattccc tggtgccatt cgtagaaaat atggtattcc      4920
     aactgtttgg tgtaccagag gtaatactta ctgacaatgg tacacaattt gtgtcaaagt      4980
     cttttgaaga gcttctggct aaatatcatg ttacccattg gaagacccct agttatcacc      5040
     ctcaaattaa tgattcagaa cgtgttaaca gagtcttaac aactgccata cgggcaacta      5100
     ttaaaaggga ccataaagaa tgggcgaata acattcaggc tatcgctaat gctataagaa      5160
     actcggttca tgaggccacg agatatactc catattttgt gatgtttgga cgcaacatgg      5220
     tctctgacgg tagggagtat aggcacatga gagacacgtc cgaggaaaca ggtagcatag      5280
     agtccaacga aagaacgaaa ctttacagtg aaatccgtga aaatcttaag aaagcttttg      5340
     agaaacactc aaagtactac aatttaagat cgaacgcaga ctgtcctaaa tacgtagtag      5400
     gagagaaggt tttgaaacga aacaccgaac tgtcagataa aggcaaaggg tactgtgcca      5460
     aacttgcacc aaaatatgtc cctgccgtga tcaaacgtgt gattggagat cattgttatg      5520
     agctagagga cgacaaagga aaacgaattg gagttttcaa ctgtaaattc ctgaaaaagt      5580
     tttctttgcc aacctctaat taatgttaac tcgatttcaa gctatgcatc ctttctataa      5640
     ggtaacaaaa cgtctaatga cgtcccaaaa tacattaatg gcacttcatt cacttgatca      5700
     atgattcatt cgaatgaact gattcactag ctatgcaccc atttgctcaa tgggaacaat      5760
     gcgccttgaa ggttgcctta aaatcaacga tgttgcattc agatcgaatt gtttcgttat      5820
     caggtagagt tttcctggga acaagctatg aatactcagt gagtggacca agcaactatg      5880
     ttgcacaaaa acatgaccgg ccattcataa gggtctcctc ggtttccgag ttgagcagtc      5940
     ccacaacaac acgattcact actggtgaca acccttatga atgtgcatgg aatcagtgtc      6000
     tctcacttca gaaacaatga tcaaattaag caaacaaaat ctccatcaca gctatgaacc      6060
     tcaatacgag caaccattca caagaaaacc tgacgaggaa acgtttctag caaggctagt      6120
     gacgaaggag tatggaagag gtaactctac ctagcctgaa tttcctcgaa gaagatcaac      6180
     acgacagcta tgaacctcaa tttgagcaac tattgacaag aaatactgac gaggaaacgt      6240
     ctctagcaag actaccgacg aaggtgtacg gaagaaacaa tcttacctag cctgaatttc      6300
     ctctaatatt agtaaattag caacctaatc atagcatcta gattagtacc taaagtagcg      6360
     ttagtttcct tagcacatta cgatatttac gattcagtcg atgatttcgt ttgtcttgta      6420
     tcgtcaatgt aaataggtcc atagtttata catagtcgtg ttctcatcca ttgataatgt      6480
     ccgtacaaat tttccaatac gttgatgtcg tagtcttcag tgtcaatgac gtcacacgtt      6540
     cattcagtct aagtttcatt gattggtcat catatgctca aaggttgaag aggttcatca      6600
     tcatctctga cagtatcgtg atatttcgtt cgtcctatcc tcaagttgtt aatagtagtc      6660
     caataagaat agcagtaaga tctgaatctt gtcccaatag tttttgcaag ccgcatgctg      6720
     tgttccaaat gaagaataga ttcccacgtc gcagcacctg tagaagaaac aacaaagcat      6780
     tcaatttcag gcaggaaagc attaattgaa tactcccccc gtaaattttc tccttgataa      6840
     agatgttctg catcgaagtc ccatccagca acaaaatctc aggaatccgt cccgtccagc      6900
     aacaaaaaaa cagctattcc acactctgtc tgactcctag tgaggtgtca tggttctgat      6960
     tggaatctag ttccggtggt ttgacagttc gatggctgcg tacgtgttag gtagattctg      7020
     tacttgtggt gtgaagttaa atgtgaagtg ttgtataaca gttgaggggt gttaagttta      7080
     gtttgctttt ttgagtttcg ggtgaccaga acaagtttct ggtgtggaaa ctcaactaag      7140
     ttttaggttt aagttacgtt ttgtgagaga aatggacaaa ttgcctggag tataccttcg      7200
     gggtgagcca aatctctgca aaatagatat ttgcggtaaa ttcggaggat atttatgtgc      7260
     tcaacgtaat gattgaggtt ataatagaat ccgaataagc ctgtattttg ggattttaag      7320
     aatttttatg taaagtattt ttccagattc gactgaatct gtcaaaagta cgttttggat      7380
     taagttggtt tgagttttca gatttgtgaa gacagaatac acctaacacg ttggcgactt      7440
     cgaactggaa aacatttttt gtatttattc atattttagc atttattaga gccttgtaca      7500
     taataattca cattccgaat ttaagtagtt atagtagaat cagttggcag atttgctaga      7560
     ggatataatg attcgctgga gaccggagtc acgcgacgct gatggtcagt agcagatacg      7620
     gtccgtgata gatctgtagt ctgaaaacag ggaaggagtc aactttcagt tgatgatgaa      7680
     accatatgac cccgaattta ttgaactcta agcaaagtac gtcgaacgat tcgacttttg      7740
     taaatattaa tcgtaagtta aacccttacg aaaatttagt tgaatgaatt caactaaatt      7800
     ttcgtaacct tagcatggag tga                                              7823
//
ID   Gypsy-52_AA-LTR repbase;    DNA;    INV; 1701 BP.
XX
AC   AAGE02020210;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_AA_;
KW   Gypsy-52_AA-I; Gypsy-52_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1701
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020210; Positions   28615   30315.
XX
SQ   Sequence 1701 BP; 465 A; 352 C; 408 G; 476 T; 0 other;
     tgtaacggta gccctttttg ttatttgttt atttgttaat tgtttattta tttattattt        60
     tctattaaaa cttagtcaat taaattgaaa gacatttaaa ttaatcaaca aaagttacat       120
     ggacatgatc aaaaccaaaa tgacacgaac aattcagaaa attgcataca actgcttcaa       180
     gcgtagatag gttatccgat acgcagcgta gatgcgcaag accgagaatc actgttcgtg       240
     ttttcgttac cgtgttagag aaccccgaag tagtcagctt ttgaatactt ggctttgtaa       300
     cggaatgaca agaaaaggct attcaatcgc gacggagatt tcaataactc agatcacaca       360
     aacataatta acggagaccg tcgggtttct gtttccggga gccataccgt gagatcctat       420
     ctgaggaaga acagaaatat tctcgtccac tttgttccag atcgtggtag aagtaggatc       480
     gcgtagtgta gtttctcctg tggtgtgatt tcgtgagttt atttaaaacg tgaagtgttc       540
     tttaaccagt attaattgtc cccatatccc cgtttaggcc tgaaatagtc agttagattg       600
     tgcggtaatt cgttgtgcgt gttgaactcg agttgaccag ttcaaaggta aatgacattt       660
     attgtgtgtc ctatatgtgc taattgtgtc cgtctagcca agcgcaagct tcggctgtta       720
     ttttctaaaa atagaactca cgtacatcgc acaaagcaac gagcgaaaac gtcccgctgc       780
     accacatcac gtcgcgcgtc ctccacgttc tggtgccaaa gttcgccggc gccctgaggc       840
     cggaaaggag ttgcgaacgt caccaacgca ctccaggcag aataccattc gcctaccgtc       900
     atcccgttgg gaccagatcc ttggaaacgc ctcaacgccc tcgtgaatga gcgtgattcc       960
     gtaggagcaa cgtaagccat cagagcgtca tcctgaggta gcctacgtca tcggcaacgc      1020
     catcatgccg taagttcgga gagtgagctt cgacaaaccg tgagtaaaac gcaacgttgc      1080
     atgcaagaag attagcacgg acacacaaaa agcgctagag agtagagatt agaaccgcac      1140
     acgttagtta ggaaggggga tagtagaaga cgaagaaagg tcggccgaaa agtcgttaac      1200
     gaaaatgtag attagttaaa tgttaataaa tgtctttttt gaagtacttg tttccctaaa      1260
     agccatgtgt tagttagtga tagttgagaa agttgaagta cgttttcacg tttcgttttg      1320
     tcttgagttt tcccgttttt tgttgaggaa tccgccttcc aaagcgttat ggagtcgaag      1380
     tggttgggag atctctgccc gtgatgagaa aaagggtcag gtcgagttct aggattcggt      1440
     tgtctgttgg gatttgttgg ttaggtttgt gtggtctcag tttttgaaat gttagattcc      1500
     gtcgaggcca ggttgaagca agagtctgct cacttgttcc cgaacactgt taagtatttg      1560
     aaagctgact cttcggtcag tacctagccg ggcaccgtaa acacgacgag tggtcctcct      1620
     cggaggtggc gctcaagcca ctcgtttaaa atccagtccg gaagtcagta gcagactccg      1680
     agccgccttt aggccgctac a                                                1701
//
ID   Gypsy-52_AnFu-I repbase;    DNA;    INV; 5483 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5483
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2936-2936 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1390..2271
FT                 /product="Gypsy-52_AnFu-I_1p"
FT                 /translation="MDTERWPLEPFNDAANSADLRREWEEWHRALELIIGL
FT                 KSIKTQEKKLTYMLARGGRGLQRIFYNLAPVQEEEKIQSVKIPFRPKETPV
FT                 YDNAVKRLNNFFVGKRNERIELEIFRSLKQKGDETFNQFVLRIRTQAAKCD
FT                 FQTRTAKEIFHQITIGAKDERVRDKGMENSMGIDELINYAINREVLMEQKR
FT                 KNAESSGAETQIAHVRREGATYSRANACLRCGSWRHQASAKECTARQSRCN
FT                 KCGTIGHFARVCKKRDYEGRENTRYQWKKPKEANVVYGNKENNWSNKNERE
FT                 EV"
FT   CDS           2398..5439
FT                 /product="Gypsy-52_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EKPSDNGIITCFVDCLPVNFLIDSGAAINTVTPEVWR
FT                 QLKQIKATIVQHEVDSDLRITAYATKQPLKLQGKFEAWVKVNEAKPKVYAQ
FT                 FFVVEQSGKCLLGKRTAEALRVLKVGLEVLQIDKTKKAFPKFPDIQVKLSI
FT                 DKAVVPKKISYLRVPIALEEKVERKIQDMLDTDIIEPVKGPVDWISPMVVV
FT                 PKGKDDIRICINMRGPNQAIHREHYPLPVIDTLLNKLRGSRLFSKLDITSA
FT                 YHHVELHPASRDITAFMTNKGLMRFKRLMFGINCAPEIFQRIMCQMLVGIE
FT                 GVVVYIDDIVVAGESKEQHDHRLKEVLEILKRNNATLNEEKCTYGVTCLEI
FT                 LGYNVSAEGIAPSEEKIVAIKNFRKPETKEEVRSFLGLINFVGQFIPDLST
FT                 KSEPLRKLIRGDTKTFGKDEEIAFDELRRELCNTVRRLGFFDPGDKTELYT
FT                 DASPVGLGAVLVQRTHAGEARIISFASKGLTKTERIYPQTQREALAIVWAV
FT                 EKFYYYLFGTQFTIFTDHKTLQYIFEGKHQNGRRACSRAEGWALRLLPYRY
FT                 EVKHIPGPTNISDILSRLCPVAEDNPFDENTEHFLYAVGDEYVAITLPQIK
FT                 ESTAQDETLKKVMAAIKNQAWDPSLAHFQAFENELGILDGIVVRNDRIVLP
FT                 ANLRRHAMQIAHRGHPGVVSMKRNLRERLWWPYMDREVDSYVRECEGCTLV
FT                 APSGQAEPMIRKTMPERAWQDIAIDFFCAKEHATFLVIVDYYSRYMKIIEM
FT                 SNTSATKTIEALEVVFKEQSYPETIRSDNGPPFSSEEFKGYCCKKNMRLIH
FT                 TIPYWPQMNGLVERNNQGILRAWRIAKATGACWRTAIKEHEHMYNLTPHST
FT                 TGKAPLELLTGRPVKDLLPSLKADPSWNRDENEKDTDAIRKMKGKIYADNR
FT                 RGSKVSEISEGDIVRIRNYVPGKLETRWSKERYEVIKKAGNDTIIVSEQGV
FT                 RYRRPVAHLKKIEAPSTMHEPTNNCTAQNNNKEKVDVETAKAEGTNRVRRI
FT                 CKVPLRYR"
XX
SQ   Sequence 5483 BP; 2005 A; 881 C; 1320 G; 1277 T; 0 other;
     attggcgcag ccggtatttg aaattaaaag aaccttaaaa gctggaagag tgagtacaag        60
     aagattaaaa gtttataaga agtattaaaa aaaaacggaa ttgataaaag aagagcatat       120
     ttatgtgtaa agttggaagt ttagataatt aggatataat tactggagat aagggagttg       180
     tacgatcaag aatttttatt cttatgtgat aggattttta taagttctct tgtgtgtgtg       240
     tgtgtggtgc attcgtggtt aatctagagt ctagaagaat ttagagtaaa attaaaaaaa       300
     acaattaaaa aaaaaaataa taaaaaaaaa tagaaaagaa gtttgtgagc ccggtacgaa       360
     accgaagcac aaaagacaag tccggaggaa tccgtagtgt cgaaaaaaaa agaaaaaaga       420
     agattgtgag cccggtacta aaccgtagca caagagaaga caagtccgga gcaatctgta       480
     gtgtcgcaaa taagaaaggt aaagtgtaag gcaggagcaa aattacagaa aagactagtc       540
     cggagaaatc cgtagtgtca catgttaaaa aagggggagt gtgagtacgg tacgaaatcg       600
     tagcacaaaa ggaaagtccg gaggaatctg tagtgtcgag gaaaagaaaa gaaaagaaga       660
     ttgtgagccc ggtacgaaac tgaaacacaa aagacaagtc cggaggaatc cgtagtgtcg       720
     aggaaaagaa aagaagattg tgagtccggt actaaaccgt agcacaagag aagacaagcc       780
     cggagcaatc cgtagtgtcg caaataagaa agataaagtg tgaggcagga acgaaattac       840
     agaaaagact agtccggaga aatccgtagt gtcgagtatg agaaagaaaa gtgtaagtgt       900
     gagtccggta cgaaaaccgt agcacaaaag acaagtccgg aggaatccgt agtgtcgcaa       960
     aaaaaaaaaa aaaaaaaaaa aaaaagaaag aaaaagaaac gactgtgtgt tcgggacgaa      1020
     acacaaaaca agattggaac aatgacatgt aagagcaaaa ttgtgtgcct aagacaagcc      1080
     cggaaaagtc cgtagtgtct gaaaacacag atgtgcagag ggatcatgag tgcgcgccgc      1140
     atacaagaga acagcccgga tacatccgta gtgtcgtaca gaaacgtaga aacaatggcg      1200
     tgaacagtaa agtgttagtg ttaaagtgtt ctatagtttg ttcttcctta acggcattag      1260
     agaagaagac aatagggatc atatatattg cgaaacaagt ttatagtcta ttttgctttg      1320
     agtaatttcg ggtttaaaaa aagatattgc ggtaattaaa aaaaaaataa tgaatatttt      1380
     tttctgtaga tggatacgga gcgttggccg ttggagcctt tcaacgacgc tgcaaattcg      1440
     gctgatttac gacgagaatg ggaagagtgg catcgtgcgt tagaattgat tataggacta      1500
     aagtcaatta aaacccaaga gaaaaaacta acgtacatgt tagcacgagg gggaaggggc      1560
     ttgcagagaa tattttataa tttggctcca gttcaagaag aagagaaaat tcaaagcgtt      1620
     aaaatacctt ttcggcctaa agaaacccct gtttatgaca acgcagtaaa acgattgaat      1680
     aacttttttg ttggaaagag aaatgaaaga atcgaattag aaatatttcg atcgcttaag      1740
     caaaaagggg acgaaacatt taaccaattt gtactcagga ttagaactca ggcagcgaaa      1800
     tgtgatttcc aaacacgcac agcgaaagag atttttcacc aaattaccat cggagcgaaa      1860
     gatgaaagag tgcgagacaa gggcatggaa aactccatgg ggattgatga attaatcaac      1920
     tacgccataa atcgggaggt gctaatggaa caaaagcgga agaatgctga gagtagcgga      1980
     gcagaaacac aaattgctca tgtgcgtaga gaaggggcaa catattctcg cgctaacgcg      2040
     tgtttgcgtt gcggatcatg gcgacaccaa gcaagtgcga aagaatgcac cgcgcgacaa      2100
     tcacgctgca acaagtgtgg gaccattggc cattttgcca gggtatgcaa gaaacgtgac      2160
     tacgaaggac gcgaaaacac aagataccag tggaagaaac caaaagaggc aaatgtcgtc      2220
     tatggaaata aggaaaataa ttggtccaac aaaaatgaac gggaagaggt atagtatgga      2280
     aaagtgattt ggataccaga acatttagaa attatgttga aggttgatta aataaatagt      2340
     gatatcgctt tattattctc cttaatttta caacgattca ttttccgtta tttctaggaa      2400
     aaaccaagtg acaatggcat cattacatgt tttgtagatt gtcttccagt aaactttttg      2460
     attgactcgg gagcagcgat aaacacagta acaccagaag tatggagaca actaaaacaa      2520
     attaaagcta caatcgttca gcatgaagta gacagcgacc tccgtataac ggcgtatgcg      2580
     actaaacaac cgttgaaact acaaggaaaa tttgaggcat gggtaaaagt gaacgaagct      2640
     aaacctaaag tgtacgcgca atttttcgta gttgaacaaa gtgggaaatg cttattaggg      2700
     aaaagaacag cagaggcact gcgtgtgtta aaagttggtt tggaggtatt gcaaatcgat      2760
     aaaacaaaga aggcttttcc taagtttcca gacattcagg tgaaattgtc aattgataaa      2820
     gcggtagtgc caaagaagat atcttattta agagtgccaa tagcattaga agagaaagtt      2880
     gagcggaaaa tccaagacat gctagacaca gacataattg aaccggttaa gggaccagta      2940
     gattggatat cgcctatggt ggtggtgcca aaagggaaag acgatatacg aatatgcatc      3000
     aatatgcgtg gcccgaatca ggctatccat cgagagcact acccactacc agtaattgat      3060
     actttactca acaagttgag aggttcacgt ctattttcaa agttagacat tacttcggct      3120
     taccatcatg tagaactgca ccctgcttct agggatatca cggcgttcat gacaaacaaa      3180
     gggttaatga gatttaagag attaatgttt ggcataaatt gtgcaccgga aattttccaa      3240
     agaattatgt gccaaatgtt ggtagggatc gaaggtgtcg tggtttatat cgatgacata      3300
     gtagtagcag gagaatcaaa agagcagcat gatcatcgtc tgaaggaggt cttagaaatt      3360
     ttaaagagga acaatgctac acttaatgaa gaaaagtgca cttatggagt gacttgttta      3420
     gaaatcctgg gatacaacgt tagtgctgaa ggaatagctc cgtcagaaga aaagatcgta      3480
     gcgatcaaaa atttcaggaa accggaaact aaggaagaag ttaggagttt tctaggttta      3540
     atcaattttg tcggacaatt tattccagac ctttcaacaa aatcggaacc tttacggaag      3600
     ttgatccgtg gcgacactaa aacatttggg aaggacgaag agatagcgtt tgatgagttg      3660
     agaagagaac tgtgtaatac agtaagaagg ctaggttttt ttgatcctgg agacaagacg      3720
     gaactttaca cggatgcttc tccggtaggt ttaggagcag tactagttca acggacacat      3780
     gcaggggaag ctcgcataat tagttttgct tctaaaggtt tgacaaaaac cgaaagaata      3840
     tacccacaaa cccagcgcga ggctcttgca atagtatggg cggtggaaaa gttctactat      3900
     tacctgtttg gaacacagtt taccatcttt actgatcata aaaccctaca gtacatcttt      3960
     gaggggaagc atcagaatgg tagaagagct tgctctaggg cagaaggttg ggcgcttcgc      4020
     ttacttcctt ataggtacga agttaagcac attccagggc ctactaatat atcggatata      4080
     ttgtcacgac tgtgccctgt ggctgaagac aatccgtttg atgaaaacac agagcatttt      4140
     ctatacgctg tgggcgacga atacgttgcg ataacactac ctcagattaa agagagcacg      4200
     gctcaagacg aaacgttgaa gaaagttatg gcagctatta agaaccaggc atgggatcca      4260
     agtttggcac attttcaagc ctttgaaaat gagttaggaa tactggatgg aatcgttgtt      4320
     agaaacgatc gaattgttct ccctgctaac ttacgacgac atgcaatgca aattgctcac      4380
     agaggacatc ctggtgtagt aagcatgaaa agaaatctaa gagaacgatt atggtggccg      4440
     tatatggacc gagaagtgga tagttatgta cgagaatgtg aaggatgcac attagtcgca      4500
     ccttcgggac aggcagaacc catgattagg aaaacaatgc ccgagcgagc ttggcaggat      4560
     attgctatag atttcttttg cgctaaagag cacgcaacgt tcttagtaat agtagattac      4620
     tacagcaggt atatgaagat tatagaaatg agcaacacat cggcaacaaa aacaattgaa      4680
     gcattggaag tagttttcaa agaacaatca tatccagaaa ctatcagaag tgacaacggg      4740
     ccaccatttt caagcgaaga gtttaaggga tattgttgca aaaagaatat gcggttaatt      4800
     catactattc cttattggcc ccaaatgaat gggttagtag aacgaaataa tcaaggaata      4860
     ttgagagcat ggcgcatagc taaggccact ggagcatgtt ggagaacagc gatcaaagag      4920
     cacgaacata tgtataattt aacaccccat tcaacaaccg gcaaggcccc attagagctg      4980
     ctaacaggga gacctgttaa agatttgttg ccatcgttaa aagcggatcc cagttggaat      5040
     agggatgaga acgagaaaga taccgatgca atacgtaaaa tgaaagggaa aatttatgcc      5100
     gataatagac ggggctcaaa agtttcagag atatcagaag gagacatagt aagaattcga      5160
     aattatgttc cagggaaact agaaacaaga tggtcaaagg aaaggtacga agtcataaag      5220
     aaagctggaa acgacacaat tatagttagc gagcagggag tacgataccg gcgaccggtt      5280
     gcacatctta aaaagattga agcgccatct actatgcacg aacccacaaa taattgtacc      5340
     gcacaaaata ataataagga aaaggtagac gtagaaactg ccaaggcaga ggggaccaat      5400
     agagtaagac gaatttgtaa ggtccctctg aggtatcggt aaagcaacat ttttttttct      5460
     tataaattgg acgagaaaag gga                                              5483
//
ID   Gypsy-52_AnFu-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2864-2864 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 209 BP; 75 A; 34 C; 68 G; 32 T; 0 other;
     tgtagagatg tgagtaagca gaacccatga gagcgggatg attgtgagca gtggggaact        60
     catgagttac tgcgaagtgc taagatcaag gatcggagca aggatgagac cagcaggaga       120
     tggaaagcgc accaaaaggg gcagacgcga ttgaacagtc gaagggaacg gtcgacagtg       180
     aaaatacgaa taaatacgag aactctaca                                         209
//
ID   Gypsy-52_CQ-I repbase;    DNA;    INV; 2141 BP.
XX
AC   AAWU01016480;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_CQ_;
KW   Gypsy-52_CQ-LTR; Gypsy-52_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2141
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 483-483 (2011).
XX
DR   GenBank; AAWU01016480; Positions    3854    1714.
XX
CC   Positions [1552-2031] - Integrase core
CC   'GGGGA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           241..2061
FT                 /product="Gypsy-52_CQ-I_1p"
FT                 /translation="MENYHNHHSLPPFDVSDTTSIGSRWAKWKRSLDLFLE
FT                 VNCVALGQRKRSYLLHFAGPEVQDIFYNIEGHDAPAPAGTDVYKEAIRLLD
FT                 AHFAPMSSIPYERVIFRRMEQQDGETVEKFLHRLRDQGRLCEYGNALEMRI
FT                 TEQVYDNCSSNALREAILKKKLMTVQDIAVEARILETVERTRGEIRKPTEE
FT                 RKQEEQETEAAVNFVRKNKDDVCFRCGYTGHFASDRKCPARKQQCDRCQMV
FT                 GHFRAMCKTKLVNKPKRSGRTSEIRQVRTRQTSSGTESDSSSDDDVQHVYA
FT                 SSSSSGTGKVRCDLGGVRLDWFVDSGSQYNIISRTTWKKIKQQGAVFSRCE
FT                 TLDKTLRVYGGGKLKVHKVIEANLSTQQQTVTHKIHVVDKQHGVNLLSRGT
FT                 SVELGLLTIYVESSSGSRVDKDEQGKEVNEDRHERAEEGFGVARTGLPYDG
FT                 ESAAGPWTRLDVGLIGPFGNGEHVLVLVDKDSRFVVAERMTRVIPKQIIRT
FT                 LKQIFMRMGLPLVLFMEEKDEIIKDAIQACCDIYGISLMQGTSHSSEAEEA
FT                 KQRIRSFYDNLEEGLELDVEVAMQEFLYNYSLAPHQATGKPPALLMFRRNL
FT                 RNLTAHAKP"
XX
SQ   Sequence 2141 BP; 638 A; 440 C; 619 G; 444 T; 0 other;
     ttttggcgac gaaagtggga ttaaatgatt aaattcgatt tggaaaaagt ttaaatacga        60
     aaagtgtccg cgaaaaacaa agccgcgcgt gggagtgagt tgtaaaagac gaaataaacg       120
     gaaagccagc agttcgaagg tcgccgaagg aaacataacc tcgaagggac tacgccccga       180
     atgaaaaagt gaaatcgcct cagttgcgaa aacaaaaagt gcaaataagg aagtacaaga       240
     atggagaatt accacaacca ccacagtttg ccgccgtttg acgtatccga cacaacttca       300
     attggaagtc ggtgggcaaa atggaagcgg tcgctggacc tgtttttgga ggtcaactgt       360
     gtggcgcttg gccagaggaa gcggtcatat ctgctgcact tcgctggtcc tgaagtacag       420
     gacatcttct acaacatcga aggacatgat gctccagcgc ctgcagggac ggacgtgtac       480
     aaagaggcca ttcgtttgct ggacgctcac tttgcgccga tgtcgagcat tccgtacgaa       540
     agagtcatct tccgaagaat ggagcaacag gacggagaga cggtggaaaa gttccttcac       600
     cgcttaaggg atcaaggccg actgtgcgag tacgggaacg cgttggaaat gcgtattacc       660
     gagcaggttt acgacaactg cagttcgaac gcactgagag aagctattct gaagaagaag       720
     ctcatgactg tccaagacat cgcggtagag gcacggattt tggaaacggt ggaacgaaca       780
     cgaggagaaa ttcggaaacc aacggaagaa cggaagcagg aggaacaaga aacagaagcc       840
     gcagtgaatt ttgtccgcaa gaacaaagat gacgtttgtt ttcggtgtgg ttacactggc       900
     cactttgcca gtgacaggaa gtgtccagcg aggaagcagc aatgtgacag atgccagatg       960
     gtaggtcact ttagagcgat gtgcaagacc aagttggtaa acaaaccgaa gcgttccgga      1020
     aggacaagtg aaatccgtca agtgagaaca cgacaaacga gctcgggaac ggaatctgac      1080
     agttcttcgg atgatgacgt gcagcatgtc tatgcttcga gttcgagcag cggaacggga      1140
     aaagtgcggt gcgatctcgg tggcgtcagg ctggattggt ttgtggactc aggttcacag      1200
     tacaacatca ttagtcggac gacgtggaag aagattaaac aacaaggagc tgtcttcagc      1260
     cggtgtgaga cgttggacaa aacgctgcgg gtgtacggag gtggaaagct gaaggtgcat      1320
     aaagtgattg aagcaaactt gtctacgcaa cagcaaacag tgacgcacaa gatccatgtg      1380
     gtggacaagc agcacggtgt taatctgctg agtcgaggta cttctgtcga acttggcctc      1440
     ctgacgatct acgttgaatc atccagtgga agtagggtgg acaaagatga gcaaggcaaa      1500
     gaggtgaacg aggaccgaca cgagagagct gaggaaggat tcggcgtcgc ccgtacaggg      1560
     ctgccatatg atggtgaaag tgccgctggt ccatggactc gtcttgacgt cggcttgatt      1620
     ggaccattcg gaaacggcga acatgttctt gttctagtcg ataaggatag tcgctttgtg      1680
     gtcgcagaga gaatgacacg agtgatcccg aagcagatta tacgaacttt gaagcagatt      1740
     tttatgcgaa tgggacttcc gcttgttttg ttcatggagg agaaagacga gattatcaaa      1800
     gatgcaattc aagcctgctg cgacatatac ggaataagcc tcatgcaagg aacttcgcac      1860
     tcatccgaag ccgaggaggc gaagcaacgc atacgttcgt tctacgacaa tctagaggag      1920
     ggactggaac tagatgtgga ggtggcaatg caggagtttc tctataatta ttcactggcg      1980
     ccgcatcagg caaccggaaa gcctccagcc ttgctgatgt tccgtcgtaa tttgaggaat      2040
     ctgactgcac acgcgaaacc gtaggagcac gaataacagg gcgaacgagt tcttacctaa      2100
     atccgaattg ttctacactt aatttgcgaa aaggggagat a                          2141
//
ID   Gypsy-52_CQ-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   AAWU01016480;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_CQ_;
KW   Gypsy-52_CQ-I; Gypsy-52_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-124
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 484-484 (2011).
XX
DR   GenBank; AAWU01016480; Positions    1713    1590.
XX
SQ   Sequence 124 BP; 38 A; 31 C; 18 G; 37 T; 0 other;
     tgttgtgatt actggcaaca ctgacactcg aatgtaacca acctaccttt acattacatg        60
     taccttggat tactcaataa aagtcacttg aagtagacgt cacgcacttg ttttactccc       120
     aaca                                                                    124
//
ID   Gypsy-52_DEl-I repbase;    DNA;    INV; 6866 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   10-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_DEl-I.
XX
NM   Gypsy-52_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6866
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 494-494 (2012).
XX
RN   [2]
RP   1-6866
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (10-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. It is a fragment of Gypsy LTR
CC   retrotransposon. The insertion of Mariner-7_DEl-like element is
CC   masked by X.
CC   [2]: 3'-termini of the internal region is approximately
CC   determined.
XX
SQ   Sequence 6866 BP; 1747 A; 1093 C; 1156 G; 1617 T; 1253 other;
     gttcgattgt acatcagctg ggttaggagc tgcacccgtt gtactatccg gtgttacgtt        60
     gtacattata asgaattttt gcaactcctt cttttcattw cttctacttg catatgcgat       120
     ttttagacgt ttacccggcg atttattcat atttttcact tcgccgtttg cttatggcca       180
     atgtgaagga gttgttagta actcgattcc gtttgttctt tgagtttcgc gcttatgaac       240
     tgacaccgtt ktccgctktc aatcatttct attatttcct caacttaaga actactctcg       300
     gccaattctg tgattgataa cgcaactggt attgaatttg tgacaatatg aaatatggtt       360
     ttctctcctt gccaatcgaa tgattccggg cgtataagcc accattctat gcggactagt       420
     ggtctggagg tgggcttaaa tatagcttca aggggcttat gatccgacca actcaaattc       480
     taggccgatc aaataaaaat aaaacttttc tactgcccag acccagtgcg agactttcct       540
     tctcgttttg gaagtacctt ttttctacat ctgataagct cttgctggcg aacgagataa       600
     tacggtgagt tttatctttg tctagttgca ccaaaaccgc tccttatgct actggactag       660
     cgtcttcgat caacctagtc cgatccgtta aagtgaaata ggacagcatg gaacctaccg       720
     aaaccttttc cttaagctgt ttaaaagctt acttctgcgc ctgatcccat acgaatttct       780
     cattcaattt aaacaatctt ctcaaaggct ctttagtatc ggtgaaatct ggtacaaaat       840
     ttccgacata tgtgaccaaa cctaagaaac tgcgcgcctc ttccttattg ctgggctctc       900
     taaaattctg tataacctta attttgtctg gatccgcctc aaaacccttg tccgatagga       960
     tatgaccaag aaatatcaac ttggtggttc gctaaaaaca attctattcg ttgtgtaaca      1020
     catttttctc cacaaaaaca tctttcactg tgttcaacgc cgttttgtgc tcatcaaggc      1080
     tattgccaaa aattattaca tcgtcaatat agtttagggc attcggacac tgtgccagca      1140
     tcttttccat tagcctttga aaaatttccg gaccacccca attagcaaac tgttatacca      1200
     gcccatgata tgcaataaat gtcgttatct cccggcttgt atcatcaagc tcaagttgat      1260
     gataggcgtt cttcaggtcg tgccgagaaa agtatcttaa gtttggtcat caatgagccg      1320
     aacgacggta gaggataatt ttccctttga atggcctttt ttggtctgct catgtccaca      1380
     cacatacgaa tatcttcaca tttcttaaac gcgatgacaa ctggtgatat ccaagcgctc      1440
     ggaccagtca ccggctttat aatgtgtaaa catctagtca atatcatagc aaaatattag      1500
     ctttaggtgt gaaatgtgaa tatttatata tatttaataa tcgataaatg atttgaactg      1560
     atagatagat ggtcagtgac cattggtcac ataaatgtaa gtaaagattt aagaggaaat      1620
     caggggacga tcactttttt ggaccggctt gggtgtgaaa aacacgcttt agagatccga      1680
     aaaacgaatt caataaaacg aagcccattc cagttgcttc tcaataacaa agaactaaga      1740
     ctgtttgcaa atcaggtgtg gggtttgccc cagatcttct cgagatgaaa tactctgata      1800
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1860
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1920
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1980
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2040
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2100
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2160
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2220
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2280
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2340
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2400
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2460
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2520
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2580
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2640
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2700
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2760
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2820
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2880
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2940
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3000
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxt taatcttgac      3060
     aaaggacgaa ctagtgagcc tgctaatcgc agaagatgta ccagtggacg gcaaagagaa      3120
     catacaacaa ctgcgggtga tgctaaaagc cgtacagtca acatctatca tagaattgga      3180
     caatattact gaaaaaccgg atgacgaagt cgataatgga gctgagagtg ttttttggga      3240
     gaggacgacc gcaattccga tgaactggcc gaaattttga accagatgac cccgtataaa      3300
     gcccgaaaag atcttgccga gagcggaacc gtggactgca aacccaccat tgacattaag      3360
     gacatagaat caaccttgcg aaatttctct ggagatgatc tcgttggtgt tcatgcatgg      3420
     atccgtgagg tggacttggc tgctgctaca tacggtttga gcgatgccca gcgttggcta      3480
     ctgggtaatc gcaagcacca ggggtcagcc cgttcataca cgatgtacaa aaaaaccacc      3540
     aactgaaagg aactgagcga gtgtctacta aaagtctttg ggtttcaaat gacgaaccat      3600
     gaggttgcaa agcagttgca gagacgctca atacttaaag gcaaatcact gctgtgcaaa      3660
     ttttattgct atgcgtaata ttgctagaca agggacgtta gaggacacgg acgcattaaa      3720
     atacattgtg gttggctttc aggatcacac cagctgagca gcaccattgt attactgtat      3780
     ttctctcgat gagctgcgtg agaaaatgat gctttatcag atcgtacagg ccgagtttaa      3840
     acgaaaacca caagtttcac gcacggctgt acctttgcgg cagtcatctt ccgcaaacat      3900
     ttccgatgct cgtaatgcag aggccaacat aaggtgcttt aattgccgct caatgggata      3960
     tttcagcaat caatgcaaga aaccgaggcg accagaggga ggatgctttc attgctttga      4020
     gactgggcac cagttccggg agtccccgaa gcgtatacgg acagctgcgt tgtgtaccag      4080
     tgacgagaag gaagaggaag acgattctgt tggcagaaat tcgtttattc aactaataag      4140
     cataaagttg cctggtaaac agggatgcat tgatattgat aacatttttg cattacgaga      4200
     taccggaagc cccgtgagtt ttataagtaa agaagtcatt ccacaatatg ttaattatga      4260
     aaacctagaa gatagtcgtt tccgtggcct cagtggacaa aacattttga caattgaaaa      4320
     agttaaactg atacttgtgt ttaaagaaaa atactacaga atggaagctt ttttattcct      4380
     agtcttatat tactgacggc gttgttatta ggccgagatg tattaaaact attgtcactt      4440
     aaattagtaa tacgtaaaac tgtaccaaat tataaaaaga ttgactcact aaacaatact      4500
     gtagcggtgg cttctgattt atactgtgca tccctattta ctaagaagtc aaacttaaaa      4560
     aacatacctt gctatagctt aaataaacaa aaagatcaac gtttaattgt aaacacaatt      4620
     gcatcctcgg tgaagcttga ggtgttttaa gaatagatga acttggtggt gctggctgat      4680
     agtgttgcaa tcgtaggcga ggagtttggt tgtgttcgaa tgcaggagtg ccgggatatt      4740
     atagtagcca ttacgttaat aagttttcaa acggttgtag ctcgacaaga tttaaaatgt      4800
     gcattcgtct taatgaatca atccctattt actgtgctcc tagaagattg ccatatcatg      4860
     aaagggagat tgttactgat acaggtaata atctattggc cgattaaatc attcgcccaa      4920
     gtaactcccc atattcttcg actgtggtac tagttaagaa gatagttggg aatataagaa      4980
     tgtgtgttga ctaccatggg atgaataaga agacagttca tgacaacttt cctttaccgc      5040
     ttatagaaga ttgcttagaa tacctagaag gtaaatccgt tttttctgtt ataaatctta      5100
     aaagtgattt tcaccacata ggtgacgaag aagaatccgt gaaatatact gcctttgtga      5160
     ctccggaccg gcagtttgag tatttaaata tgcctttcgg gctcaatagt ggaccggcta      5220
     tattccacag gtttatatct gacgtattaa gcgatcttgt tagaaatcga caaattgttg      5280
     tgtatatgga tgatataatt ctggcatcta atactgtaga taagcaccaa caggtattag      5340
     ctacgttgct gagtattctt gttaagttta gtctcgaaat aaattttaaa aaaagtagct      5400
     tcttgcaaaa acgtattgat tacttaggtt acgatgttag tgctcaggga attttgccta      5460
     acgatactca tttgggagcg aacaaacgat atccggaacc actcaacagt aaagcgttgc      5520
     attcttattt cggtttattc tcatattttc gaaagtttgt ccctaatttc tcacgcgtgg      5580
     caaggccctt aacggaccca ttaaaaaagg agggcccttt ccaatgccag attccgaaaa      5640
     actttgactt tgtggagtta agaacagcgt tgtcgttgcc attacgaaac ggaattccat      5700
     actgatgcga gctctaataa gttttgcagt attattgcaa aaaaagttag ataagaagct      5760
     tcatcccatt ttcttttact caagaaaaga caacgcagcc gagtctcgtt accacagctt      5820
     cgaacttgaa accttggcaa ttatatacgc tttacgtcgt ttccgtatat atttggaaaa      5880
     caaaccttcc ctaattgtca cattgcaaca ttgcagttcc ttggttcaaa ccttgagtaa      5940
     aaaatccatc aatcctcgta ttgcccgttg gtaccttgag ttagaagttt ttaataattc      6000
     gatgcgctga gtaggcaaac ggagttgtta gctgatgacg tggttgaagg agtttccgat      6060
     ccgtgtgtga caccgtctat gattaaaagt ccgtgtgtac ctgatgtacc ttgtaaacct      6120
     aaaaagggaa cgtattcttt gcgtagaatt aaagtgttac ccatgaataa aacagaattt      6180
     gcaataacat cggaatatgt agctagcaac aaggaaaaaa tatagtacta taagaataaa      6240
     taaataaata aaaagaaaac aaaataagaa atttgtaaac gtgtgaggat gattaaattg      6300
     taaaccaagt taacgagaat tgtattaaga ggctgatcag cggggattaa gcgaattgtg      6360
     aaacaaggga tgtaggactc gtaagcagga tcttcgaacc agaagagggg tacatcgcaa      6420
     tcttcaatgg aaagaatgta aagttacaaa cagactgtgg acatgaaaga accataaatg      6480
     gatcagcact gatcacattc agcaagtgca gagccatggt aaataacatc caatatgaaa      6540
     caatgaaaag acttggcaca gcgagactaa acttaaagat acctcaaatc ggagctgtcc      6600
     agaaaaaaat aacttcccaa gaattggaaa tatatgagct aaagatggag gacatcgaga      6660
     cgaaatcaaa gatcaataat tccagacgga accagcgata tacgcaacag caacatacgt      6720
     aatgctaact gtactaatga taattgtggc agcagtggct tgcttttcga aaagaacaac      6780
     tacgtttaca caagcggcac cagtggcatt cacaacaact attgctccct ccgccacttt      6840
     cacagctacc atcgctgagg atgagg                                           6866
//
ID   Gypsy-52_DEl-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   10-JUN-2021 (Rel. 26.06, Created)
DT   10-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_DEl-I;
KW   Gypsy-52_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-337
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3102-3102 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus. GC-rich 4-bp TSDs.
XX
SQ   Sequence 337 BP; 111 A; 89 C; 50 G; 87 T; 0 other;
     agttaccgcc tcagcaatta ccctcggggg tcccccaccg aaaccctcac gtcagccaaa        60
     acatctagct accaaatacc ttgttggcaa taaagttgcc accaaaccaa acatcggagc       120
     cactgcagtt ccaagtccca catatgcatc cgctccaatt tcaattccat tccgctaggt       180
     cagcataatt tcatgtgaac atttaagcat taaaagacga atattaaaat aaagaagttc       240
     agttcgattt atattgtcaa agaacacgca acttgttact cttaaattat tgggaggctc       300
     cccgaaccaa attagaatac cattctttaa gttaact                                337
//
ID   Gypsy-52_DWil-I repbase;    DNA;    INV; 6034 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_DWil_;
KW   Gypsy-52_DWil-LTR; Gypsy-52_DWil-I.
XX
NM   Gypsy-52_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6034
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1873-1873 (2012).
XX
RN   [3]
RP   1-6034
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1139..2638
FT                 /product="Gypsy-52_DWil-I_1p"
FT                 /translation="MVLTRSEENLAHEISDALCSICQKAVWATQELVVKTS
FT                 CHHLFHKNCISEWIDQFNVCQVCNASIRRADLEVQNVPFAEIESERPVNIG
FT                 AITTGAVPKGPNTRSRRNFGGGEQANQATANIEMSAGDRPTTIRKQRGRPQ
FT                 GNGSNIPRRSLDASRRPARASIEIDYDRISNQIESIIDRRMGQMGITQQHV
FT                 NASAQNQSIPRSSSTVRPSRTGHNPDKITQLIHSWNVKFDGSSKGVTVEEF
FT                 LYRIKTLTEDCLDQDFDAVCKNLHILLVGKAKEWYWRYRRDVVNLEWSEFC
FT                 AAMKYQYKDYRSDVDILEDIRGRKQKVGETFENFYDEIMTQMSRMSKSIDE
FT                 EQLIQLLTRNLLPDIRHELLYIPILSIPHLRKLVQMRENLLGDVVSRKANK
FT                 TSANFQYAKRNIAEVEEPEKFELSEKMDLNVYNVEAVQAPVKVFRCWNCDA
FT                 EGHGWDNCLEPRTIFCYGCGSKNVYKPQCKNCIAKKAENLVKGPSVKARMA
FT                 PKNL"
FT   CDS           2911..5958
FT                 /product="Gypsy-52_DWil-I_2p"
FT                 /translation="MIHEKSDGRLYAEVSFLNFREQGLLDTGANISCVGST
FT                 LASEDWSKYPKFRRISSQVKTADGQDQPVIGFITLDITYKNQTRPIKLFII
FT                 PSIQKRMILGIDFWRAFQLAPGLLSALDYESEFRIPDSKEEQSYPLSDCQK
FT                 RQLQAIISLFPSFERKGLGRTTLIKHHIDVGSAKPIKQRFYPVSPAVEKLM
FT                 YSEVDRMIELGVIELSNSPWSSPMRLVVKPEKVRLCLDARKINACTTKDAY
FT                 PLPSIDGIFARLPRAEIITKIDLKDAYWQVELSEESRGITAFTIPGRPLYQ
FT                 FRVMPFGLCNAPQTMCRLMDEVIPADLKYCCFGYLDDLCVVTADFDSHISV
FT                 LMRLADQFRKANLMLNLKKSQFCVTEVKYLGYIIGRGGISTDPSKIESILQ
FT                 WPTPKSLKQTRGFLGLAGWYRRFIANFSEIAAPITDLLGKKTKFEWTDSAQ
FT                 KAFDDLKRQLTTAPVLQNPDFSKKFFLQCDASDVGVGAVLVQLDLEGEEKP
FT                 IAYMSKKLNAAQRNYSVTERECLAVVWGVERYRCYLELQDFEIVTDHASLS
FT                 WLMKQSNLKGRLARWAMQLQGYKFEISHRKGREHIVPDALSRMYSEEIAQL
FT                 DSFGPEIDLSSDCFKDEEYQKLKEKVLQNVQSYPDVKVMDNLVYIRTEHND
FT                 GTEECRKKMWKLWVPQRMTAEVISRAHDSTITAHGGMVKTVELIKRHLYWP
FT                 GMVSEIREYVRNCEVCKCTKPPNRTLKPPMGKQAVSERPFQRLYIDLLGPY
FT                 PRSRKGNIGLLIVLDHLTKFQWLCPVKNFTTKPIIEFLQSQIFLSYGVPEI
FT                 LVSDNGVQFKSNEFNSFLTTFGVQHTYTAAYSPQSNASERVNRSIVSAIRS
FT                 YLKSDQTEWDTHIQEISCALRNSYHQSLKISPYHAVYGLDMITHASQYKLL
FT                 RNLTMLDEPVVQLDRDDQLKLLRSKLRENLKSAYEQQAQQYNLRTRPICFK
FT                 VGQEVFRRNFVQSNFSKGINAKLCPAFLKARVREKQGNSYYILEDLQGKLV
FT                 GTFHAKDIRQ"
XX
SQ   Sequence 6034 BP; 1995 A; 1008 C; 1273 G; 1758 T; 0 other;
     tatttggcgc ccaacgtggg gcagtctatt acatatttgc cgtaacgcaa ggtcctggaa        60
     tggtgaggct aaaaaatgtg gtcttacttt ttagggcaag agttggtccc atggacgaga       120
     ggttgactta aaattttttt ttctttacac tttgtgtaaa ggggtcgaat aacatcagac       180
     catagtgagc cttcgtcaga aaagaccgaa tgtgtcattg attttcttta tttcttttct       240
     ttcttctttt tgctctctac tgactgaggg aaatttagct tggaattcgt cttgtagcca       300
     gactacaata gcgaccacta aaacactcct taggacgtag atggtaatct cttttcattc       360
     tatttttgtg taaagtttga atgttatgga tgcggtctct atgcaactaa atggaaatcg       420
     tatggtagta attctgccac agcgacctct agtagtagga ttggctaagt aaacttcatc       480
     ttttcgcata ttttctgtta ctctaatact ggtattggcg atttaagtct agcttggaat       540
     tcgtaacgta gtgtgtttac gtctacgacc actagagcgc taaaccaata gcttggagga       600
     tctttttgtt tctttctatt ttttttctct tttctccttt tctgttatgt ttttgctata       660
     agattcgatc gacggattgg atttttggaa ttctttataa ttgcgaagca gttataaaga       720
     ccattcaatt caggtgtgaa ttaatattgg cattgcataa aaagaaaaaa taaacaaaca       780
     atcttatttc tctctttcga aagcaccagg tgcaaatgga atcttataac ttaaatagtg       840
     cagtcataaa ctatgctagg aaattcaggt ttttggctaa gctaaatcct gaccagttaa       900
     aagagtgatg catctaaaat tatttgccag gagcaaccca gtgtattctt taatcttttt       960
     ctttcttttt cataaatttg ttttgggata tattagagta taggactcat tattagaaaa      1020
     ataagatagt gacttcaaat tcacattaag ggaacgatat gatttaagat aaaataccaa      1080
     ttaaaattta atcacgaaat attattaaaa tattaaaatt aatcagaaat ttgtcaaaat      1140
     ggttctcact aggagtgaag aaaacttagc tcatgagatc tcagatgcgt tatgctcaat      1200
     ttgtcagaaa gcagtatggg ccacgcaaga gttggtggtg aaaacttcat gccatcatct      1260
     atttcataaa aattgtatat cagaatggat tgatcagttt aatgtatgtc aagtttgtaa      1320
     tgcgtcgata cgtagagcag atttggaagt gcaaaacgtg ccgtttgcag agatagaatc      1380
     cgaacgtcct gtaaacatag gtgcaatcac aacaggagcg gtgccgaaag gcccaaatac      1440
     acgctctcgt agaaattttg gtgggggtga acaagctaat caagcaactg caaatataga      1500
     gatgtctgca ggagaccgac ccacaacgat aagaaaacaa cgaggaagac ctcaaggaaa      1560
     tgggtctaat atacctcgta gaagcttaga cgctagtaga agaccagcgc gagcctcgat      1620
     agaaattgat tatgacagaa ttagtaatca aatagagtcc ataatagacc gaagaatggg      1680
     acaaatggga attacacagc aacatgtaaa tgcgtcagcg caaaaccaaa gtattcctag      1740
     gagttcatct acagtcagac caagcagaac aggtcataac ccagataaaa ttacacagct      1800
     aattcatagt tggaatgtaa aatttgacgg ttcgtcaaaa ggagttacgg tcgaagagtt      1860
     tctttatcgt atcaaaacgt taacggagga ttgcttagac caagattttg atgcagtatg      1920
     caaaaatttg catattcttt tagtaggcaa agctaaagag tggtattgga gataccgtag      1980
     ggatgtagta aacttagagt ggtcagaatt ttgtgcagcc atgaaatatc aatataaaga      2040
     ttacagaagt gatgtagata tactagaaga tattcgtggg cgtaaacaaa aggtaggaga      2100
     aacctttgaa aacttttacg atgagattat gactcaaatg tcacgtatgt cgaaaagcat      2160
     agacgaagaa caactcattc agttgctcac acgtaattta ttgccagaca ttcgtcatga      2220
     attgttgtat atacctattc tctctatacc tcatcttcga aagctagtgc aaatgcgcga      2280
     aaatttatta ggggatgtag tctctaggaa agcaaataaa acttcagcca attttcagta      2340
     tgctaaacgc aacattgcgg aagtagaaga gccagaaaag ttcgaactct ccgaaaagat      2400
     ggatttaaat gtgtacaatg ttgaagcagt gcaagctccg gttaaagtat ttcggtgttg      2460
     gaattgtgat gcagagggac atggctggga caactgctta gagcctcgca ctatattttg      2520
     ttacgggtgt ggctcgaaaa acgtatataa gccccaatgt aagaattgta tcgccaagaa      2580
     agcggaaaac ttagtgaagg gtccatctgt gaaagctcgg atggccccga aaaatcttta      2640
     attgaaatct tacctgattt accggctagc tcagaaccaa tagagcaagc aaaccaaata      2700
     ccagacttac cttttaactg ttacgataag acgccagtta tatcgtcagt taaaccctat      2760
     caagaacgtt tgagaaatta tctcaaagtg cgtagtagaa tttttggaag caacccaatt      2820
     tcaactcggt cacgaccaaa gagatctact aagcgattgc gaactttttg gaaagcagtt      2880
     agacaaacta agcgtttact tatttcgtca atgattcatg aaaagtcgga tggaagattg      2940
     tatgcggaag tatcattttt aaattttcgt gaacaaggtc ttttagatac cggcgcgaac      3000
     ataagttgcg tgggttcgac tttggcttca gaagattggt caaagtatcc aaagtttcgt      3060
     cgtatttctt cccaagttaa aacagcggat ggacaagatc aaccagtcat cggtttcatt      3120
     acgctagata ttacctataa aaaccaaacc agaccgataa agttattcat cataccgtcc      3180
     attcagaaaa ggatgatatt gggaatagac ttttggagag cgtttcaatt agcgccaggt      3240
     ttgttatcag ctttagatta cgaaagcgaa ttcagaattc cagatagtaa agaggaacaa      3300
     tcatacccat tatctgactg tcaaaagaga caacttcaag ccattatttc attatttccg      3360
     tcatttgaaa ggaaagggct tgggcgaaca acgttgatta aacatcatat agatgtcgga      3420
     tcagcaaaac cgattaagca aaggttttac cccgtatccc cagcagtgga aaaattaatg      3480
     tatagcgaag ttgatcgaat gatagagtta ggagttatag agttatcaaa tagtccgtgg      3540
     agttctccga tgagattagt agttaaacct gagaaagtga gattatgtct agatgctaga      3600
     aagataaatg cgtgtacgac aaaggatgca tatccgttac caagtattga tgggatattc      3660
     gcacggcttc ctcgtgccga aatcattact aaaatcgatc ttaaagatgc gtattggcaa      3720
     gtggaattat cagaagaatc tcgtggaatc acagcattta ctattccagg aaggcctttg      3780
     taccaatttc gagtaatgcc attcggattg tgcaatgccc cgcaaactat gtgcaggttg      3840
     atggacgaag ttattccagc ggatttaaag tattgttgtt ttggatatct tgatgattta      3900
     tgtgtagtaa cagcagattt tgattcacat atatcagtat tgatgagatt agcggatcaa      3960
     tttcgtaaag cgaatctaat gttaaatctc aagaagagtc agttttgtgt gaccgaagtt      4020
     aaatatttag ggtacataat tggcagaggc ggaatttcaa ccgatccaag caagattgaa      4080
     tcgattttgc aatggcctac accaaagtcc ctaaaacaaa cgcgtggatt tttaggatta      4140
     gcaggatggt atcgaagatt catcgcaaac ttttcagaaa ttgcagcgcc gattacagat      4200
     ttgctaggaa agaaaacgaa gtttgaatgg acagatagtg cgcagaaagc ttttgatgat      4260
     ctcaaaagac aactgacgac tgctccagtt ttgcaaaacc cagattttag taaaaagttt      4320
     tttcttcaat gtgatgcaag cgatgttggt gttggtgcag ttttagtaca attggatttg      4380
     gaaggcgaag aaaaacccat agcctatatg tccaaaaagc taaacgcggc acaaagaaat      4440
     tacagtgtca cggaacgtga atgcttagcc gtagtttggg gtgtagaacg ctatcgttgt      4500
     tatctagaac ttcaagattt tgagattgtt acagatcatg ccagtctatc ttggttgatg      4560
     aagcagtcca atcttaaagg gcgtctagcg agatgggcta tgcaattgca aggttataaa      4620
     tttgagataa gtcatagaaa aggacgagaa catatagtac cagatgcatt gtcgcgtatg      4680
     tactccgaag agatcgcgca attagactca tttgggccag aaattgattt atcttcagac      4740
     tgttttaagg atgaagagta tcaaaaacta aaggagaaag tactacaaaa tgtgcagtca      4800
     taccctgatg tcaaagtcat ggataacttg gtgtatatta ggactgaaca taatgatggt      4860
     accgaggagt gcagaaagaa aatgtggaaa ttgtgggtgc cgcaaagaat gaccgcagaa      4920
     gttatttcac gtgcgcatga ttccactatt acagctcatg gaggcatggt aaaaaccgtg      4980
     gaactaataa aaagacattt atattggcca gggatggttt ccgagattcg agaatatgtg      5040
     cgtaattgtg aggtatgtaa gtgtactaaa cctcctaata ggacattaaa accacccatg      5100
     ggtaaacagg cagtgtctga acgaccgttt caacgtttgt acatcgacct cttaggacca      5160
     tatccaagga gtagaaaagg aaacataggt ttacttattg tgttagatca tttgaccaaa      5220
     tttcaatggc tttgtccagt gaaaaacttc acgacaaaac caattataga gtttcttcaa      5280
     agtcagattt ttctatccta tggagtgcca gaaattttag taagtgataa tggagtgcag      5340
     tttaaatcaa acgaatttaa ttcattttta actacgtttg gagttcagca tacatataca      5400
     gctgcatatt cccctcaatc aaatgcttca gagagagtga atcgctcgat cgtgtccgct      5460
     attcgttcgt atttaaaatc tgatcaaaca gagtgggata cccatatcca agaaataagt      5520
     tgtgccttaa gaaatagtta tcatcaaagt ttaaagatat ctccatacca tgcggtatat      5580
     ggattagata tgataacgca tgcaagtcaa tataaactgc taaggaattt aacaatgtta      5640
     gatgaaccag tagtacagct cgatcgagat gatcagctta aattattacg atcaaagtta      5700
     cgagaaaact tgaaaagtgc atatgaacaa caagcccagc aatataattt aagaaccagg      5760
     cctatctgtt tcaaagttgg tcaggaagtt tttagaagga attttgttca gagcaatttt      5820
     agtaaaggaa ttaatgcgaa actttgcccg gcgtttctta aagctcgtgt tcgtgaaaaa      5880
     caagggaatt catactatat tctagaagat ttacaaggga aattagtagg aactttccat      5940
     gcgaaggata ttcgtcaata aatattgtaa tatcacagac tttcacattt ctgttgaatt      6000
     cgtgacgttg aataaactac gaattaaaca gtgg                                  6034
//
ID   Gypsy-52_DWil-LTR repbase;    DNA;    INV; 2547 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_DWil_;
KW   Gypsy-52_DWil-LTR; Gypsy-52_DWil-I.
XX
NM   Gypsy-52_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2547
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1874-1874 (2012).
XX
RN   [3]
RP   1-2547
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 2547 BP; 802 A; 401 C; 472 G; 872 T; 0 other;
     tgtaatgtac aggaatttca gttattttaa aattcaactg atttcgctta tttagtattt        60
     ttgttgttgt tatcgatatt tgctaaagtg gtgagaatcg aaatgtaggt aaccagctgg       120
     aaaaagaatg aactaagtgg caacgccaca cagctgatcg gtttgttttg cattgcttta       180
     cattattttt ctataaatgg agtttggata aaacaataag aaaaataagg caaaagagac       240
     ttattgaaca gcgtggtttt tggaaaagtg ttctttcttt tctccacgtg aattccaact       300
     gatcggacgt atttgtccaa agttttaaat aacccaatag gggagtgcac cataacccct       360
     acgcgtgtgc gaaaataaaa gtttatgcgt gtgtatgtgt tcaagagatt aatgtaagtt       420
     aatttcattg caataattct cgaattattg tacgtttaac ttatgcattt tctctttaac       480
     agcatcggaa atagtttcca tcaagtattg gcaatttttc tattaattcg ccttacttga       540
     catttctttg agacacctgt cttcggcaga cttgccccag cagtctcaaa atttttgtga       600
     gtgaactgtt tgcgtcagtc aacggcttga accgacgatc aattgtggaa atccgagagt       660
     taaatatatt taacttttgc ctcggattgt agtaagggta aataaaagag aaaattacca       720
     aaatagtttt gtgtcttata cagtgttatt atagatacgg cgttagcgaa gcaaagtgaa       780
     aatttcgaat gttgcaacat ttataattgt caacatcgca ctttcgctta tcctgtctca       840
     catgtaatcc agaccatacc agcagaacac gtgtaggatt ataaacctag aaggatgtac       900
     aaaacctaac ctttttccca attgtaacct aacctaaagc atgaaggatg aacagtagaa       960
     ggaagtattc aatctaacct ttctacgaac aaaacctaac ctcactcaac acgttatata      1020
     aatgagaaga gcattttgga attattttca agtataacca aggcgtttaa tttgcctaag      1080
     gagatttttt attcgtcttc ggaacggacg aaataaccag gattaagtga aatgagtcaa      1140
     cataaggctc cccagtagtt tagaatcaat tttaagttaa gtttacattg aatttccttt      1200
     tttttttgtt tgttggctaa atggttcaat tttaaaggaa atggaattca atggcagtgt      1260
     atattttcgt tagttaataa ttttcatttt tcagaatttg agtatgcatg taaattcaca      1320
     atgtaatatg atgctttagc tctatttgga atatgtaaac cttcctattt tcaacagcga      1380
     caacaacaca acgaaagatc tttctgcgtg ggaaaaatta acaagctgta agtgtatcaa      1440
     aaaccaattt tccttatatt tttataaatt tatctgatga actgaattta ttcgggtgag      1500
     cattagcatt taatacattg tcaatggaca tatatagagc aaaatatttg tagagagtga      1560
     atttgtgtga ggatattagc gtaatcacgc cacataaatg tacaattttt ttcttttttt      1620
     tttaattttt ttttgaacta atgtaaaaag tttaattata gtaaagttag gaaatcatga      1680
     atattaagta gtagagtaat cattagtaat aagaaccaat atgcaacatt tgcaaccttt      1740
     ataatcggat ttgtaccgag attcagctat ttagctaaac attgttttga aaatgaagaa      1800
     tttttgtaga tcaaattgat cgaacctata gcacgatgat gctaattatt ttgaaatgtt      1860
     tgaataaata ttaagtttat tatgaatcat taatttcttt agttccctga tgtagaagaa      1920
     gaagtcctag ctttcgtttt gggagtctgc gataactttc gctggcaggc tcatggtagg      1980
     gtgggtacag acgcggagcg caattatcat ctatagcgcc tgcaagaagt gatgtccgta      2040
     actcttttgt attctcctct aataaaaatc caggcaaggg attcggttaa tatggatagc      2100
     cgacatacat aaaatacgct gtgaaaatac tagctatgac gttcacaaag aaccccccca      2160
     caggctgttt ttgctagtcg tttatgaatc ccattgagca gtcatatgca tactaaacat      2220
     cttctctaaa gtctatcaca cgcgttctca atataattca agtggttcgg ttaactctag      2280
     ttggaaatcg aggtatagtc ctggtggaac agcgggagta ggtttatccg ttctgcctcc      2340
     attttattga gcaaaaggat cgcagtgtca ctaacctttg tgttttgctg acctatgtcg      2400
     acagttacag ggtgtaaaac aggagtgtta gactgctact ttattttatt gatatatatg      2460
     tgtagttctc tttagctaat acatatataa ggcgggatgt cccaattttt tttgagattt      2520
     tgtcgtcatg tgtcagggtt tattaca                                          2547
//
ID   Gypsy-52_LMi-I repbase;    DNA;    INV; 4299 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4299
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(437..1135,1116..1859,1775..2107,2111..2389,
FT                 2364..2582,2586..2915,2981..3838,3582..4298)
FT                 /product="Gypsy-52_LMi-I_1p"
FT                 /translation="MSQVAQSDLPPVGGRIAMLKQEVQLCYTNIKRILLRR
FT                 YGLDASFRHDALTMDDPSLEQIIELAFKFEVSTAAGRRLESWADVAAIRAD
FT                 TTEYHDEVAAVHTSPSHSSASTYDHRTPAEATISRPPRAARRPRQQQPARR
FT                 RKQPLRLPSCPAVHPPRTGRLPDRWATCHHCGKEGHLASVCRYSGQTHTHA
FT                 KTTQDQLHGYKQVTAATATKLHIEVSINGTPLQMQVDTVQLSPTRCSCLPD
FT                 KLCHLYGHKGSSTQPAPTRLLTYNRQEIPLLGTFTQRSRTNRSPDRSSSGV
FT                 NSQDTADLFGLDAFRHLGSLSMITSIWCLIMFHFRTXTPSATNFKICSLQG
FT                 LAVPRISRHPSPPAFAPAEVLQGTSGAGSSPAAPAGRTGPPPARRRSPAST
FT                 IQSLGHSPGIGPEARKTYPSCGDFKATLNPQLLVDDFPLPRPEDLFRKLAG
FT                 GQYFSKIDLAEAYLQIPLSRSPNSTLSSIHQLAFSNFGRGLPSDSPFPESQ
FT                 QYTVINTPAGLFQLTRLMFGLASAPPFSRDTWNSFSMTSQGALTTWTTLSS
FT                 QVPPQQNTSTTSVTVPPPASGGSKCNKQSAFFPIFNLLSGTRYFPRHFSDL
FT                 FLCGRHIPPTPTPGHTPTQVLPGESFLLPKIPALCSSGAAPLYRLCRKDVP
FT                 FRWTPACASAFEPLSNNCNPPPASCRMTLPCLSFGHPCPASLLATDASDYG
FT                 IGAVLSHKLPDGTERPIAFVSKALSETQVKYSQIEKEALAVCLPAQNSSRS
FT                 SMAGLFTSRTTSHCSYLFPSSRMPTKNVTTYPAWALFLSQFRYTSTLDPHP
FT                 YMQMLTLVTPTQGPDPAFDSRPLISRSTTNPGCPTGVSHHGLHSRHRYNQG
FT                 PSSLRSPTPNTTRVVWSRMGSSCGSIPTRHPXSSFLSSCKQTCCAFSTKAI
FT                 GESPGPRLWRVAMSFGWVLQQMSSKWSGAQQLPRPPQSFQSWPSPSGPWER
FT                 IHLDFAGPFLGHQWLLVTDAYSHFPYVVRCPSITAEITIAALTKIFSLEGL
FT                 PTSIVTDNGPQLRSHEFPTFCSSNGIQHILTPPFHPQSNGGSERLVRTFKT
FT                 QMAKYVKDHSVEEALMLFLSSYSSTPTDTHSPAELLHGRQPRTLLHLLRPT
FT                 PKPTVQAGQQIPPGILGVGPGFWFQSRVASRSHTSTPRPXTILCRNRKLSC
FT                 FSSLLTVPRPQIPTVQQNFSTAANLGRCYTFFGLHRNRRSRQDNRFLQVSL
FT                 VWARGFGSRAGWLHGVILRPRGRXLYYVEIDGRTVSRHRNQLRPQFPPHHE
FT                 PRPSPTPSEVQIPSSSSQLPLLPSNRWRHVTAPALQSPPPPAPSLNHSLPP
FT                 PPVPETDPAPHQPGPLPGPSSEVADAPMPLVPPPTPPLTRFRAARXGPAAT
FT                 FLRVRGLHXEAAVDMEVDVVASRYPLGKED"
XX
SQ   Sequence 4299 BP; 998 A; 1420 C; 928 G; 947 T; 6 other;
     gtggcgacga gtaaggtgac gaatcacgac gtaagatgga agacgaatat cagaagtacc        60
     accacaacca cagacggtgc cgctagtata gagccttccg acaattcgtt caactccaac       120
     aacaattcat tttggaaatt caaagtcttc ggatccagcc cacgccgccc gcctttccgg       180
     ccttcaatga agacgcagaa gactgggaaa cctacgaaaa acggcttagg aaacatttcc       240
     ggatacatca ggtcagtcag gaaaatgacc agcgggctta cttcctctca tggaaccagt       300
     ccagtgtgta tgaacttctg cccaagttac atcacgccga cccggctaca atgtcatttt       360
     ctgccatctg cgaagtgctc aacgcctact accgccgccg tttccatgtc ttagcggccc       420
     gcgtagaatt ttatcaatgt cgcaagtagc ccaatcagac ttaccgccag tgggcggcag       480
     aattgcaatg cttaagcaag aagtgcaact ttgttacacg aacatcaaaa gaatcttact       540
     cagacgatat ggtctggacg catccttccg acatgatgct ctcacgatgg acgatccctc       600
     gttggaacag attatagaat tggcattcaa atttgaagtt tcaacagcag caggccgccg       660
     tctcgaatcg tgggcagacg tagcagccat tcgagcagat acaaccgaat accacgatga       720
     ggttgcagca gttcacacct cgccctcgca ttcaagcgcg tcaacctatg accacaggac       780
     tccggcggaa gccactattt cccgccctcc acgagccgcc cgccgtccaa gacaacaaca       840
     gccggcacgc cgtcgaaagc aacccctccg cctgccctcc tgcccggctg ttcacccacc       900
     acgaacggga agattgcccg atcgctgggc gacctgtcac cactgtggca aggagggaca       960
     cttggcgtcg gtctgccgct attcaggaca gacacacacc cacgccaaga caacccagga      1020
     tcagctccat ggatataaac aggtcacggc tgcgacagca accaagctac acattgaggt      1080
     ctccatcaac ggtacgcctc tacagatgca agtagacacg gtgcagctgt ctccctgata      1140
     aactatgcca cctatacggc cataagggct cctccactca gccggcaccc accaggctgc      1200
     tgacgtacaa cagacaggaa attccgctcc tgggtacatt cacgcagagg tcacgtacaa      1260
     atcggtcacc cgacagatcc agctctggtg tcaacagcca ggacacagcg gacctttttg      1320
     gcctggatgc cttccgacat ttgggttcac tatcgatgat cacgtcaatt tggtgtctca      1380
     tcatgttcca tttccggacg tkgacgccct ctgcaacgaa tttcaagatc tgttctctcc      1440
     agggattggc tgtgccaagg atttcgcgcc acccttcacc tccggccttc gccccagccg      1500
     aagtactgca gggcacgtca ggtgccggta gctctccagc agcccctgca ggaagaactg      1560
     gaccgcctcc agcaagaagg cgttctccgg ccagtacgat tcagtccctg ggccactccc      1620
     ctggtattgg tccagaagcc cggaagacat atccgtcttg tggtgatttc aaagcaacct      1680
     tgaatcctca actcttggtg gatgactttc ccctccctcg tcctgaagac ctgtttcgca      1740
     aactggctgg aggccaatac ttttccaaga ttgatttggc agaggcctac cttcagattc      1800
     ccctttcccg gagtcccaac agtacactgt catcaataca ccagctggcc ttttccaact      1860
     aacccgcttg atgttcggcc tggccagcgc cccgccattt tccagagata cctggaacag      1920
     cttctccatg acatcccagg gtgcattaac tacctggacg acattgtcgt cacaggtccc      1980
     acctcagcag aacacctcca caacctcggt cactgttcct ccgcctgcgt caggcgggtc      2040
     taaatgtaac aaacaaagtg cgttttttcc aatcttcaat ctcctatctg ggacacgtta      2100
     tttcccatga aggcatttct ccgacctttt cctatgtgga cgccatatcc cgcctacccc      2160
     caccccagga catacaccaa ctcaagtcct tcctggggaa agtttcctat taccgaaaat      2220
     tcctgccctc tgcagctcag gtgcagcacc cttgtaccgc ctgtgtcgaa aggatgtacc      2280
     gtttcgctgg actcctgcct gcgcttccgc ttttgaacca ttaagcaaca attgcaatcc      2340
     gcctcctgcc tcatgccgta tgaccctgcc ctgcctctct tttggccact gatgcctccg      2400
     actacggcat tggagcggtc ctgtcccata agcttccaga tggcacagaa cgcccaatcg      2460
     cgttcgtctc aaaagccctc tcagagacac aagttaaata ctcccaaata gagaaagaag      2520
     ccctggcagt gtgtttgcct gctcaaaatt cctcccgttc ctctatggca ggtcttttca      2580
     cctgatcacg gaccacaagc cattgtagct atcttttccc ctccagccgt atgcccacca      2640
     aaaacgtcac aacgtatcca gcgtgggccc tcttcctgtc tcaattccgt tatacctcca      2700
     ctttagatcc acatccttac atgcaaatgc tgacgcttgt cacgcctacc cagggtcccg      2760
     atccagcatt tgactcccga cctttgattt ccaggtcgac aacgaatcca ggatgcccta      2820
     caggcgtttc ccatcacggc ctccacagtc gccatcgcta caatcaggga ccctcttctc      2880
     tgcgaagtcc gacgccgaat acgacaaggg tggtctgagc ggccgccgcc caaaacgcaa      2940
     cgccagttkc gtttcttcca ttctatacgc caccagctga tggtcacgga tggggtcctc      3000
     ctgcggatcg atcccgacgc gccaccccgm gtcgtcattc ctcagcagct gcaagcagac      3060
     gtgttgcgcc ttctccacca aggccattgg ggaatcacca ggaccaaggc tttggcgcgt      3120
     cgccatgtct tttggatggg tcttacagca gatgtcaagc aaatggtcag gcgcacagca      3180
     acttcctcgc cctccccaat cctttcaatc ctggccctca ccttctggac cttgggagcg      3240
     catccatctg gacttcgcag ggccattcct cggccaccaa tggctcctgg tcacagatgc      3300
     ttactctcat tttccttatg ttgtccgttg tccatccatc acagccgaaa tcaccattgc      3360
     agctttaaca aaaatctttt ccctagaagg tctcccgaca tccattgtta cagataatgg      3420
     tccccagctg agaagccatg aatttccaac gttctgttca tctaatggaa tccaacatat      3480
     cctcacccct cctttccacc cgcaatcgaa tggaggatca gaacgtctag tccgaacgtt      3540
     taagacgcaa atggctaaat atgtcaaaga ccactccgta gaggaagctc tcatgctttt      3600
     cctctcttct tacagttcca cgcccacaga tacccacagt ccagcagaac ttctccacgg      3660
     ccgccaacct cggacgctgc tacaccttct tcggcctaca ccgaaaccga cggtccaggc      3720
     aggacaacag attcctccag gtatccttgg tgtgggcccg gggttttggt tccagagccg      3780
     ggtggcttca cggagtcata cttcgacccc gaggccgtma actatattat gtcgaaattg      3840
     acggacgcac cgtaagccgc caccgcaatc aactccgtcc ccaattccca ccccaccacg      3900
     aaccccgtcc atccccaaca ccatcggagg tacaaattcc cagctcttcc tctcagctgc      3960
     ccctgctccc atctaatcgc tggcgtcacg ttacagctcc tgcattgcag tcaccgcctc      4020
     caccagcacc gtcgctgaac cacagcctgc caccgccccc tgtaccagag acagatccag      4080
     cgccccacca gccaggacca cttccggggc cctcctccga ggtggcagat gcgccaatgc      4140
     cactggttcc tccgccaaca cctccactga cccgtttccg agctgcccgt sgaggaccag      4200
     cagctacatt tctgagggtc cgcggtctac accamgaggc cgccgtagac atggaagtag      4260
     acgtcgttgc ctccaggtac cccctgggga aggaggata                             4299
//
ID   Gypsy-52_LMi-LTR repbase;    DNA;    INV; 437 BP.
XX
AC   .
XX
DT   21-MAY-2014 (Rel. 20.01, Created)
DT   21-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-437
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (21-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 437 BP; 136 A; 121 C; 94 G; 86 T; 0 other;
     tgtactgcct taacagggaa cgcctgcaaa ctggcagtac gacaacccgc aataccggat        60
     agatgggcgt acaacataac ctgcacctcg cagtaagaaa cttctagatc taattacgca       120
     ctatttcccc tagatgccgc tgggagaaac aacaacctgt agcactccgc cgtgacagcc       180
     tattgaccgc tgttctcttt aaaggggcag cccgcagccg tcatgagtca gttctaacgc       240
     cgactaccaa cgccgaacac agccagaaga atcacgtacg ggaagaacca gcaagaagac       300
     gtctaccgga agacaccgct gctaccaagc cgcaaccatc gtggacggac tcttgtactt       360
     ccctcactat gatggtatac tgttttgtaa agtagaagtt ggaaataaac tattcttgaa       420
     gaacagaaaa cacaaca                                                      437
//
ID   Gypsy-52_MSe-I repbase;    DNA;    INV; 5303 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5303
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 929-929 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1283..5128
FT                 /product="Gypsy-52_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAQYTLDKFECEGEVGSVAIRWERWKRSLDIYLEAAG
FT                 IDTDAKKRACLLHFGGPELQEIFYNIPGANAPIDDNNKDQIFGIAISKLDE
FT                 YFAPKQSKIYERHVFRLLKQGPGEKFEKYLIRLRQQATKCQYTAKDENIID
FT                 QITEKCLSDDLRKKILKMGDNVTLDMIISEANALEVIERQLGHFENKTQDF
FT                 QTVNKLTSEPNKNQYSERKPCGRCGSLKHFARDVTCPAKGKTCLKCGILGH
FT                 FQNQCRTRQGQKRKLERKEFDKGKGVKRFRQVNSLEETLSMEEQQTDYIFN
FT                 LDSEATVNCKIGGVDTTMLIDSGCNYNLITDKTWKKLKENNIVVRAQNNKP
FT                 NKSFVAYGCTTPLKLLGSFQAKINLSNKKEHATFYVVESGTRNLLGRITAT
FT                 SLGVLKINVNEVESTAFPKFKDVLIEIPVDDSVKPICQPYRRVPIPLEEKV
FT                 ELKIKELLKKDIIEEVHGPSSWVSPIVPILKEDGSLRLCVDMRRANAAIKR
FT                 ENHPLPTMDQLLPKIRNAKLFSKLDIKDAFHHIELHPDSRFITTFITNKGL
FT                 FRYKRMMFGITCAPEIFQKTLERILLGCEGVINFIDDILIYGKDLKEHDNR
FT                 LNKVLQVLEQYNVVLRPEKCVYRIMKVQFLGHELSREGIRPLEKYISAIKD
FT                 FRAPTTISELQSFLGLINYVGKWIPHLATITEPLKLLLRNKLGRNANITVN
FT                 WNTSQQSAFDTLKTSLMNISTLGYYNPHDKTIVIADASPVGLGAVLVQTDS
FT                 NGPRIIAFGNKTLSECERRYCQTEKEALALVWAVEHFNMFLFGKEFDLITD
FT                 HKPLETIFGPKSKPCARIERWVLRLQCYKFNVKYSPGKTNIADPLSRLCSL
FT                 VPHHYETKDYIQNVIEHVLPTAISLQEIIEHSQQDPDIQKVRDGLYNSRWC
FT                 ETIKTYKIFENELCFYDNILLRGTRIVVPLKLRERVLNAAHEGHPGIVAMK
FT                 SRLRTKVWWPKCDKDAENVCKACKSCILVSMPNPPHPLKRRELPTEPWVDI
FT                 AIDLMGPLPNGTHILVVIDYFSRYKEIKICNSITSAVIIEVLKDIFSRLGN
FT                 PDSLTADNGKQFTSEEFKRFCNDRNIKIFNTIPYWPQQNGEVERQNRDILK
FT                 RLKISQAEKMDCKEALYDYLTMYNSTPHTVTGKTPAELFFKRQFRDKLPMI
FT                 QDLTYNSGDAEMRDRDKEQKEKGKEYADKRRRAASCELEVGDKVYIKNMNR
FT                 ANKLSLNYDPTSYSVEAKQGGDIQLRNDETGQKVRRNVVHLKKANGEWQVI
FT                 REKDQEITKDQISDMSEQSKQ"
XX
SQ   Sequence 5303 BP; 2027 A; 772 C; 1025 G; 1478 T; 1 other;
     tgtggcgacg aggaaaattg taagtttact tgaatttaca aaaaaaaaaa aaacttatta        60
     cttttacacg ggaattatag tccagtaaaa tagaactgtg tgattagtta aaggtttaat       120
     tttcatacta gtgatattaa caataacaaa acctatatcc tattgattca atcatacttt       180
     acagtgaaga agtaaatatg ggcgtagaca taaacaacaa tgaatagata acagttttaa       240
     caatacttta atgatttatt ttgttttgtt tttcccactt tgtacaggta aatataaatt       300
     agtatgtgtg caaatgatat tgcgtgaatg tgaaataagc atagaaatga aataggtaca       360
     atgtcatact tttatcttat attattagag gaattaactt attcttaaaa gtaaatgtac       420
     attatagtta cacgtgcaat aaatgccgta gcctatagtc gcatacattt atcaattaaa       480
     ttaagtttta ctttgacttt tataacctaa atgaatatgg ttagtaaaat tatcttttta       540
     ttaaattgaa ttctaaatta aaatgagttt caagtcacct gatattaatt attgttaaat       600
     aaattcttta tcaacatcat aattggtatt caactaggga caaaggaaga agaaaaaaaa       660
     aagtgagaat caaaagttat tacaagatta caaggtccga caattcagtt ttgaaattaa       720
     attgcattgg atagtagcat taaattgcgt ggatatgagc attaaattgc gttagatgtg       780
     agcatttaat tgcgttggat gtgagcatta aattgcgttg gatatgagca ttagattgta       840
     ttagatgtga gcattaaatt gcgtggatat gagcattaaa ttgcgttaga tgtgagcatt       900
     taattgcgtt ggatgtgagc attaaattgc gttggatatg agcattagat tgtattagat       960
     gtgagcatta aattgcgttg gatatgagca ttaaattgcg ttggctgtgt gcatttaatt      1020
     gcgttggata tgagcattaa attgcgttgg atgtgtgcat taaattgcga gaaaattatg      1080
     aaatattggc attcgattgc gagtaatgta tagaatattt gcattaaatt gcaagaatta      1140
     tcattctcat tagttctaaa tcacaaaaaa aaaaaataaa aaaaaaaact aaaggttgta      1200
     taatagtatg tatgtgttaa atgtagtgag atatgaaaac atacacggct tgkcttacat      1260
     tgttgacagg tagcaccata atatggcaca atacactcta gataaatttg agtgcgaagg      1320
     ggaggtaggc tcagttgcta ttcgatggga acgttggaaa aggagtttag atatatattt      1380
     agaggcggct ggtattgaca ccgatgccaa gaaaagagct tgtttgttac attttggtgg      1440
     acccgaatta caagaaatat tttataatat accgggtgcc aatgcaccca tagacgataa      1500
     caataaagat caaatctttg gaatagcgat aagtaaattg gacgaatact tcgcgccaaa      1560
     acaaagtaaa atatatgaaa gacatgtgtt tagactcctt aaacagggac ctggcgaaaa      1620
     attcgaaaaa tatcttataa gactgagaca acaagcgact aaatgtcaat atacggctaa      1680
     agatgaaaac attatcgatc agatcacaga aaaatgtcta tcagatgatt tacgtaaaaa      1740
     gattttgaaa atgggggaca acgttaccct agatatgata atatcagaag caaatgcgct      1800
     agaagtcatt gaacggcaat taggtcattt tgaaaacaag acacaagatt tccaaacagt      1860
     taataaattg acatcagaac caaataaaaa ccagtattca gaaaggaaac catgcggaag      1920
     atgtgggagt ctcaaacatt ttgctcgcga tgtaacttgt ccagctaagg gaaagacttg      1980
     tttaaagtgt ggaatactgg gtcatttcca aaatcaatgc aggacaagac aaggccagaa      2040
     gagaaagtta gagagaaagg agtttgacaa aggaaaaggt gtgaaaagat ttaggcaagt      2100
     gaatagttta gaagaaactc taagtatgga agaacaacaa acagattaca tttttaattt      2160
     agacagtgag gcaactgtca attgcaaaat aggtggtgta gacacaacaa tgttaataga      2220
     ctcaggctgt aactataact taataacaga caagacatgg aagaagttaa aagaaaacaa      2280
     tattgtagtg agggcacaga ataataaacc taacaaaagc tttgtggcat atggatgtac      2340
     tacacctttg aaactattag gttcatttca agcaaaaata aacttgtcta acaaaaaaga      2400
     acatgccact ttctatgttg tcgaaagcgg aacacgaaat ttactagggc gaattactgc      2460
     aacttcccta ggggtactca aaatcaatgt taatgaggtc gaaagcaccg cgtttcctaa      2520
     gtttaaagac gtgttaattg aaatacctgt agatgactca gtgaaaccaa tttgtcaacc      2580
     atataggaga gttcctatac ccctagaaga aaaagtagaa ttgaagataa aagaacttct      2640
     taaaaaagat ataattgaag aagtccatgg gccttcaagt tgggtttcac caatagtccc      2700
     tatattaaaa gaagacggaa gtcttcggtt atgcgtcgat atgcgaagag caaatgcagc      2760
     tataaaacgt gagaatcatc cattacctac aatggaccaa ttactgccaa agatcagaaa      2820
     tgcaaaattg tttagcaaat tagacataaa ggatgccttt caccacattg aactccaccc      2880
     agattcaaga tttataacga cttttattac aaataagggt ctgtttcgat ataagagaat      2940
     gatgtttggt ataacatgtg ctccagaaat atttcaaaag acattagaaa gaattctatt      3000
     aggatgtgaa ggagtaataa attttattga tgacattctt atatatggaa aagacttaaa      3060
     agagcatgat aatagactaa ataaagtttt acaggtatta gagcaatata atgtggtttt      3120
     gagaccagaa aaatgcgtat atagaatcat gaaagttcaa ttcctaggac atgaactatc      3180
     cagagagggg attagacctc tggagaaata tatttctgca attaaagatt ttagagcacc      3240
     aacgaccata tccgaattac aaagtttcct gggattaata aattatgttg gaaaatggat      3300
     tccacattta gcaactatta cagaaccatt aaagctgtta cttcgaaaca aattgggtag      3360
     aaacgctaat ataacggtca attggaacac aagccaacaa tctgcttttg ataccttaaa      3420
     aacttcattg atgaatatat ctactttagg ttattacaat ccgcacgata aaacgatagt      3480
     aatcgcagac gctagtccag ttggactggg agctgttctg gttcagactg atagtaatgg      3540
     accacgaata atagcgtttg gcaataagac actcagtgag tgtgaacgcc gttattgcca      3600
     aactgaaaag gaggcattag cgttggtttg ggcagttgaa catttcaata tgttcctttt      3660
     tggaaaagag tttgatttga tcactgatca caaaccacta gaaactatat ttggcccaaa      3720
     atccaaacct tgtgcacgta ttgaaagatg ggttttgaga ctacaatgct acaaattcaa      3780
     tgttaaatat agtccaggca aaacaaatat agcagaccct ttatcaagac tttgttcgtt      3840
     agtgccacat cactatgaaa ctaaagatta tattcaaaac gttattgaac atgtcctacc      3900
     aacggctatc tccttacaag aaattattga acattcacaa caagaccctg acatacaaaa      3960
     agtcagagat ggtctttaca atagccgttg gtgtgaaaca atcaaaacgt acaaaatttt      4020
     tgaaaatgaa ttgtgctttt atgataatat tttgctacga gggaccagaa tagtagtgcc      4080
     attaaaacta cgagaacggg tattaaatgc agcacatgaa ggtcacccag gtatcgtagc      4140
     aatgaaatcc agattgcgca ccaaagtttg gtggccaaaa tgtgacaaag acgcagaaaa      4200
     tgtgtgtaaa gcatgcaaaa gctgtatatt ggtttctatg cctaatccac cacatccttt      4260
     aaaaagacga gaactaccca ccgaaccttg ggttgatata gctattgact tgatgggtcc      4320
     tttacctaat ggcactcata tcctagtagt cattgactat ttttctcgct ataaggaaat      4380
     caaaatttgt aactccataa caagtgcagt aataatagaa gtattaaaag acatattttc      4440
     acgtctaggt aatccagact ctttaacagc tgacaatggc aaacaattta ctagcgaaga      4500
     atttaaacga ttttgcaatg atagaaatat caaaatattt aacactatac cctactggcc      4560
     ccaacaaaat ggagaagtag aaaggcaaaa cagggatatc ctaaagcgat taaaaattag      4620
     tcaagctgag aaaatggact gcaaagaggc gctatatgac tatttaacaa tgtacaatag      4680
     tacacctcac actgtcacag gaaagacacc tgcagaattg ttttttaaga gacaatttcg      4740
     tgacaaattg ccgatgatac aggatttgac atacaactcg ggtgatgcag agatgagaga      4800
     cagagataaa gaacaaaaag aaaaaggcaa ggaatatgca gacaaaagaa gacgggccgc      4860
     gagttgcgaa ctagaagtgg gggataaggt atatataaaa aatatgaata gagcgaacaa      4920
     attaagctta aattacgacc ccacatcgta ctcggtagag gcaaagcaag gtggagacat      4980
     acaactcagg aatgatgaaa cagggcaaaa agttaggcga aacgtggtac atttaaagaa      5040
     ggcaaacggg gaatggcaag tgataagaga aaaagaccag gaaataacca aagatcaaat      5100
     aagtgacatg agtgagcaat ctaagcaata attaaatatt tgtataatcc tgaaaagaaa      5160
     atttaattaa ttaaaattaa gcatttgtaa caattaattt gtattaacgt gaaaccatat      5220
     gagcagttaa taaacactat tactaaaact ttataatgtg gttttatatt aaatatcttc      5280
     ttaaaagaag aataagggag gga                                              5303
//
ID   Gypsy-52_MSe-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-172
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 978-978 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 54 A; 28 C; 40 G; 50 T; 0 other;
     tgtagtgtat ggatatttat aattatttcc gtctgtcgtc tcgaactata cacaacgcaa        60
     aaccgcgggt agatagaaca ttgtcttgtt gagtggcgcg gagtgaagac gttgtgcgta       120
     gcaaacgagc cgataaatta taatataata cgatataata gtggccatta ca               172
//
ID   Gypsy-52_SiCu-I repbase;    DNA;    INV; 4400 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4400
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5072-5072 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..4398
FT                 /product="Gypsy-52_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTSKDSPESEANQTANPVSSNDILQALASIAQALTA
FT                 QATATNTGQTGNATQALRCLQLPALSDPEGLSFPAFLDWKQRWKDYASSIQ
FT                 LSSQPISIQHGILRGALHQDWTLLWSARRLQIGESTTAEGAVDAMEAYLRQ
FT                 KRNPILDRQAFHRRDQQPGESIDRYYAALKTLDDAAAHNTDIQCGNCSKIY
FT                 TMTTITCSDCKVPSSIANHQQEMRIRDRLICGLRDRDIQRRIITEQYSANL
FT                 TLEKVLRMCTAMEASTTVGEELSAPAIHGNQANATSSYKRQQQKGGRSDQK
FT                 RRRVDQSKPCEWCGNTPGHPRSVCPAGNQPCNNCGIEGHFSRVCRKPKRAN
FT                 NAEPEKEDEAQVDATTNTIIAGSAQRLLPVTTIINNRSCSIPWLADSGAGA
FT                 DLIPEQEFLLLPTAAKLALRPEKVNCVGANGLGLDPVGSFTATLQLNNRQY
FT                 HTRIGVCRRLNSPLLSKEGCIALGLIPKGWPHCMLAPHLQAGAIIPGKTMT
FT                 EQKPEASGNTNAIRASILSKYADAFDDEVLRPMHGPPMKIELVDGATPVKR
FT                 YRAYNVPFHWKDSVKTQLDVMVTKGVIEKVPVGEPIDWCHPMVVVPKKGTS
FT                 EPRITVDLTGLNKFVRRPAYPVRVPREVVASIPPGVKYFTTLDARHGYWQV
FT                 PLDPSSRKLTTFITPWGCYRYCRNVMGLISAGDEHNRRGDEALQGIQNVGK
FT                 VVEDILIYDSELSTHIKRVEQVIARCQDHGITLNAKKFRFAEPETDWCGFR
FT                 LTQTGYSPAPHLYAALSKFPVPTNKTDVRSFNGLVQQFEAFSHRITELSAP
FT                 IRSLLSSKAAFVWEAPHQRAFEEVISELCSPRVLAQFQPGQPLRLETDAAQ
FT                 SRGLGYALYQQQKDGEWRPLQVGSRYVTPAESRYSATEIEMLAVVWAVRKC
FT                 KLYLMGFPFELVVDHRPLIPIINSKTLDELENNRLIRFKEKLASHHITAIW
FT                 RAGVKHTVVDVFSRHPAADPDEEDSQMDLDADPATLLAASIYDPDDGTRIL
FT                 SDPALQSLRGVAQQDSVYRRLRDAITGKITKKEELDEDLRPFWKVFHRLSV
FT                 QDELILLGCRLLIPASLRPSILKTLHTSHQGQERTLRRARQSVFWPGITND
FT                 IRNVVSSCQECAAYLPSHSREPLLTEPPPTYPFQQVGVDLFSYAGYEYLVM
FT                 VDRYSGWPAVAKCGASADSTVVIRHLRQWMAELGIPEQLTSDNGPQFTSQE
FT                 FRSWTQRWNITHRTSSPHYPQSNGLAESGVKAIKYLLAKSASNGDITGETF
FT                 QEGIMELRNTPRADGRSPAEMVFGCATRTKLPIHRGSFQKAWKIRAAQTDD
FT                 KAESLREKAKERYDATAKPLAALKPGDVVLIQNHQSRRWTLLAEVLELRPG
FT                 NRSYLLRTESGRTLRRNRRFLRLFNPRQSEAPPSSRAPESPPPPRRSSRQR
FT                 KPPDRFASANGLFPSHNLLGG"
XX
SQ   Sequence 4400 BP; 1111 A; 1337 C; 1122 G; 830 T; 0 other;
     tggcgcagtc gacagttgtg attttgtgaa gtttatccac aaaattcacg taatttcaag        60
     taacttgtgc gcgtatagtt aggaagtgac aaaatgtcta ccagtaaaga cagcccagag       120
     tcagaggcaa atcagaccgc aaacccagtc tcctccaacg acatcctcca agcgcttgct       180
     agtatcgcac aggccctcac tgcccaagcc accgcaacaa atactggcca gactggaaat       240
     gccacgcagg cgttacgttg cctccagctt ccagctctat cagatccaga gggattatcc       300
     tttccagcat tcctggattg gaaacagcgt tggaaggatt acgctagttc catccagttg       360
     tcatcccagc ccatctccat tcaacatggc attttaaggg gtgccctaca tcaagattgg       420
     acgctgttat ggagtgccag acgcttgcag atcggcgagt caacaacagc agagggggca       480
     gtggatgcca tggaggcata cctccgccaa aaacgtaacc caatcctaga tcgacaggcg       540
     ttccacagga gagatcagca gccgggggag tctattgatc gttattacgc agcgctgaag       600
     accctcgacg atgcagcagc ccacaacaca gacatccagt gtggtaactg ctccaagatt       660
     tacacgatga cgaccattac atgctccgat tgtaaagtcc cttcatcaat cgccaatcac       720
     caacaagaaa tgcgcatcag agaccgcctc atttgcggtt tgcgtgaccg tgatatccag       780
     aggcgcatca tcacggagca gtactcggcc aacctgactc tcgaaaaggt cctccgcatg       840
     tgcacagcaa tggaggcttc caccacagta ggagaggagt tatctgcacc cgccatccat       900
     ggcaaccaag ccaacgccac gtccagctac aaacgccagc agcaaaaagg gggaaggtca       960
     gaccaaaagc gtcgacgagt cgaccaaagc aagccgtgcg agtggtgcgg taacacaccc      1020
     ggccacccac gctcagtatg cccagctggc aaccagccct gcaacaattg cggcattgag      1080
     gggcatttca gcagggtatg ccgaaaaccc aaacgagcca acaatgccga gccagagaag      1140
     gaggatgagg cgcaagttga cgccaccacc aacaccatca tcgcgggaag cgcacagagg      1200
     ctcctccccg taaccaccat catcaataac agaagttgtt ccattccttg gcttgcagat      1260
     tccggagccg gtgcagacct catcccggag caagagttcc tcctccttcc aacagcagca      1320
     aagttagccc tccgcccaga aaaagtaaat tgcgtgggcg ccaacggact cggcctagat      1380
     ccggtgggtt ctttcaccgc taccctccag ttaaataacc gccagtacca caccaggatc      1440
     ggggtttgtc ggagactcaa ctcaccactc cttagtaagg aaggatgcat cgcgctaggt      1500
     ctcatcccga aaggctggcc ccattgcatg ctagcaccgc acctccaagc gggagctatt      1560
     atccccggca agaccatgac ggaacagaaa ccagaagcca gtggcaacac gaacgccata      1620
     agggcctcaa tactcagtaa gtacgctgac gcctttgatg atgaggtact acgcccgatg      1680
     catggtccac cgatgaagat cgagttggta gacggagcca cacctgtcaa aagataccgg      1740
     gcgtataacg tcccgtttca ctggaaggat tcagtgaaga cacagttaga cgtgatggtc      1800
     accaaggggg tgatagagaa ggtgccggta ggggagccca tcgactggtg tcaccccatg      1860
     gtggtagtcc cgaagaaagg aacgtcggag cccaggatca cggtcgacct gacggggctc      1920
     aacaaattcg taaggcgacc agcttaccct gtccgcgtac cccgagaagt cgtagccagc      1980
     ataccaccag gggtaaagta ctttaccacc cttgacgctc gacatgggta ctggcaggtt      2040
     cctctcgacc caagcagccg gaagcttacc accttcataa ctccatgggg atgctatcgt      2100
     tactgccgta acgtgatggg tctcatttca gcaggcgacg aacacaaccg tcgcggcgac      2160
     gaagcactcc aggggatcca gaacgtgggg aaggtagtgg aagatatcct catctatgat      2220
     tcggagctga gcacgcacat aaaacgggtc gagcaggtca tcgcccgttg ccaggaccac      2280
     ggcatcaccc ttaatgccaa gaaattccgc ttcgcagagc ccgagacaga ctggtgtgga      2340
     ttccgtctca cccaaacggg ctactcccca gcgccacacc tatacgccgc tctttcgaaa      2400
     tttccggtac cgaccaacaa aacagatgtg aggtccttca acgggctcgt gcagcagttc      2460
     gaggcgtttt cccaccgaat cacggagcta agcgcaccta tccgatccct gctgtcctcc      2520
     aaagccgctt ttgtatggga ggcgccccat cagcgggctt tcgaagaagt catcagtgag      2580
     ctctgcagcc ctcgcgtcct tgctcaattc caacctggtc agccactacg tttggagaca      2640
     gacgctgccc agtcaagagg actgggttac gccctttacc agcaacagaa ggacggtgaa      2700
     tggcgaccac tccaggtggg ctcgaggtac gtaaccccag ctgagtcacg gtacagcgcc      2760
     accgagatag agatgctagc agtggtgtgg gcggtgcgaa agtgcaaact ctacttgatg      2820
     ggattccctt tcgagttagt ggtggaccac cgacccctca tacccatcat caactccaag      2880
     acgcttgacg agctggagaa caatcggctg attcgtttta aggagaagct cgcctcacat      2940
     catatcaccg caatctggag agcgggggtc aaacatacgg ttgttgacgt cttttcccgt      3000
     cacccagcag cagatccaga cgaagaggac tcacaaatgg atctcgacgc tgaccccgct      3060
     acgcttttag ccgcgtccat ctacgatccc gacgatggca cgaggatcct atcagatcca      3120
     gctctccagt ctctccgcgg cgtcgcacaa caagacagcg tctaccgccg gttacgtgac      3180
     gctatcaccg gcaagatcac caaaaaggag gagctcgatg aggatcttag acccttttgg      3240
     aaagtgttcc accgcctcag tgttcaggac gaactaatcc tgcttggatg ccgcctcctc      3300
     attccagcct cgctacgacc atccatcttg aagaccctcc acacatcgca ccaaggtcag      3360
     gagcgcacac tccgccgggc tcgccaatct gttttttggc cgggcatcac caacgacatc      3420
     aggaacgtcg tcagcagctg tcaggagtgt gcagcctatc tcccgtcgca ctcaagggag      3480
     cccctcctca ccgagccacc accaacctac ccgttccagc aggtcggcgt ggaccttttt      3540
     tcgtacgcgg gatacgagta cctcgtcatg gttgataggt actccggctg gccggcagtg      3600
     gcaaagtgtg gcgcttcagc tgactccact gtggttattc gtcatctccg tcagtggatg      3660
     gcagaactcg gaataccgga gcagctcacc agcgacaacg gtccgcagtt cacctctcaa      3720
     gagtttcgga gttggaccca gcgttggaac atcacccacc gcacgtcatc accacactac      3780
     ccgcagtcca acggtttagc ggagtccggc gttaaggcca ttaaatacct tctcgcaaag      3840
     tccgcttcca atggtgacat cacgggggaa acttttcagg agggcatcat ggagctgcga      3900
     aacaccccgc gagcagacgg cagaagtcca gcggaaatgg tgtttggatg cgccacccgc      3960
     accaaacttc ctatccaccg aggtagtttc caaaaagcgt ggaagattag ggctgcccag      4020
     acggacgaca aagcggaatc cctccgtgag aaagccaagg aacggtacga cgccaccgcc      4080
     aagccgctcg cagccttgaa gccaggggac gttgtcctca tccaaaacca ccagtctaga      4140
     cggtggacgt tgctggcaga ggtcctggaa ctccgtccag ggaaccggag ctatctacta      4200
     cgcaccgagt ccggaaggac gcttcggagg aaccggcgct tcctccgcct gttcaacccg      4260
     cggcaatccg aagcccctcc atcatcccga gcaccagagt cacctccacc accccgtcgt      4320
     tcatcgcgcc agcgaaagcc cccagaccga tttgccagcg ctaacggatt gttcccgagt      4380
     cacaatctcc tgggagggca                                                  4400
//
ID   Gypsy-52_SiCu-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-328
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5129-5129 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 328 BP; 92 A; 93 C; 62 G; 81 T; 0 other;
     tgcggtatca tcagctacat cgccccatga cacccggcaa agcctgaagc aagtacacgc        60
     cgcaccgctg aagaccagca cggaacggaa cattccagag ggaacgagac caaagtagca       120
     gcagaggcaa gactgagctt gccttcatca ttctctcatc tcactcccat tctctctcta       180
     ttccattctc ttttcatccg acaacttgta agctccttca gagcagtcgt attaattgtc       240
     aaagaaataa agtctaatta ataaccgtta accgtgcttg cccctttggg gattaattat       300
     ttattcgcac caaggtggtg ctcacaca                                          328
//
ID   Gypsy-52_SpEx-I repbase;    DNA;    INV; 5209 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4119-4119 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..5157
FT                 /product="Gypsy-52_SpEx-I_1p"
FT                 /translation="MPRTRRDHAAPSEDDFVSDADDDKVTDNAASFSSGQV
FT                 AAMMAAMQQSQTEAFERLLAKVLDRQPSSPVPPASAFPVVGSGTFTHCTAR
FT                 FGGDADESVDAFIDAIQSYKDCANVSEQNALRGLSMLLTKNAAIWYQGIKK
FT                 EIHTWEEAVDLLISTYGDRRPPHRIYRELFQQQQGSDNTDLFVARCRALLS
FT                 KIPPSDISEKAQVDMVYGLLDVRIRKHLRREDFNDFSSMLRLARSIEIEEN
FT                 HHPGQQPSGRSARWRSGGAAQPAPLPPRRSAAPLAPSTASTPPDGTSQQST
FT                 VVSDSAASPRPKHNVAKPKCVYCKQYGHVREDCIKLRKCSDNDKALHCYGC
FT                 GAKGVLRSQCPKCSNNLSFSSVTIENNYAPALVSKSKRITKFSDVTPSHDI
FT                 PRNSDRSDSNNVQLRKQTRGMRSNSYVSYSPYVESQSCACLNNICCCVIEL
FT                 SNIYPDIPIFDKCNSDVPIRVDGSIVDKCNSDVPIRVDGSIVDKCNSDVPX
FT                 RVDGSIVDKCNSDVPIRVEDPFVNKCYSDVLVIGKRNSPSPVRVNSPAIPP
FT                 TRGCYFSNVDQLNTPSVVSFACADNTATTTVPLGGVMPSVLLAPSALHATT
FT                 VHSPQRRPVLSIQVLGLRGMALIDTAAKCSIAGHKLYKIFMEKGLTFYTKQ
FT                 VNVKLADGVVHPREILVAGVDVIITVDKSVRVDFIIFPDADNNDTLLGIDF
FT                 LNAAGMVLDFSASSWHFSGCTQTYPLEFEGEAMLRHDPISVSSMSLRADEG
FT                 LLLTSDQRLQLTKLLQRHEDVFRLGGEATRFAEHQIDTGDHAPIAVPPYRL
FT                 TPAKRAAMEAEIKKMLSDGVIEECESAWAAPALLVPKKDGTYRFCVDYRRL
FT                 NAVTKSNNYPLPVIEDLLHATKREGYMSTIDLRSGYWQVSVSPADRDKTAF
FT                 VSPLGTYRFTRMPFGLKNAPATFQRLMDRFRSGSVLKDVTLLCYLDDLLVL
FT                 SEGDFQKHLEDLEAVFNRLRLFGLRANRDKCHFACNQVKYLGHLITPKGIM
FT                 PDESKVQAIQQMNEPVNLKHLKSFLQTCSWFRKFVPGFSEIAQPLTKLTRK
FT                 NEPWTWTEDQRRAFNELKKRLITAPVLVQADYSKPFIIHTDASNYALGAVL
FT                 LQGEGNDMHPIEYSSRLLTSAERKYSTTEREALAVVWAVEKYRPYIEGHPV
FT                 ILRSDHQPLKWLLTLKSPSGRLMRWALKLQAFDIRYEYTPGKTNVIADTLS
FT                 RPACSEASQDDCGVCSVILDVPRKSATDLRSAQLDDSEVSKIIKDIENTTD
FT                 TVASTRWLERGYLMDQGVLYRYAPETESEEPQLVIPVSMLKDVMEEFHDAP
FT                 TAGHQGVERTINRIKQRYYFTGMRKYVSDYLKNCVDCQRYKFSNQKPSGLL
FT                 QTPVLNQRGEVLAIDLFGPLPEAESGEKWVFLVEDTATRWVDLYAIKEATA
FT                 EVCAKLLIEEYFLRYGFPRRVISDNGVQFISAVMQQCMFLFGVKQNLIPLY
FT                 HPEANPAERKNRDLKVQLAILVKNEHRTWPQFLAQVRFALNTATCSTTGLT
FT                 PSYMMYGREMRTPFDAQHDLRAILDKEAFVPQVTPYLSKFIDSLRDIRDRV
FT                 ERQQDLRKEYADTSRRPSPVFQVGDQVLLTTHSLSNAPKGLTRKFMPQRDG
FT                 PYTIQRKISPTSYELVDSQGQVLGCYHVSDLVALIGTHSEFLEPVQPRRLR
FT                 GRPPKATRKARX"
XX
SQ   Sequence 5209 BP; 1331 A; 1256 C; 1262 G; 1358 T; 2 other;
     agtggctgcc caacgtgccg cgagtgataa gtgaaaagtg ctcgttcgaa ctcaattaac        60
     gaacttattt cgcgaacgaa atacaaataa gaactctggc taactatcgt cattatgcca       120
     cgtacgcgca gggatcacgc ggctccctca gaagacgact tcgtctcgga tgccgacgat       180
     gacaaggtca ccgacaacgc cgcgagtttt tcatcggggc aagtggccgc catgatggcc       240
     gccatgcagc agtcccaaac cgaagcgttc gagcgcctgc tggcgaaagt gttggatcgc       300
     cagccgtcat ccccagttcc ccccgcgtca gcattcccgg tcgttggcag cggcaccttc       360
     acgcactgca ccgccaggtt tggcggtgac gccgacgaat ccgttgacgc cttcatagac       420
     gccattcaga gttacaagga ctgcgctaat gtgtctgagc aaaatgccct caggggcctc       480
     tctatgttgc tcacgaagaa tgctgcaata tggtatcagg gtattaagaa agaaattcat       540
     acatgggaag aagccgttga tttactaata agtacatacg gtgataggcg acctccgcac       600
     cgtatataca gggaactatt tcaacaacaa caaggtagcg ataacacgga cctgttcgtc       660
     gctagatgcc gcgcattatt atctaagatt cccccaagcg acatatctga aaaggcccaa       720
     gttgatatgg tgtacggcct gctagatgtt cgaattagaa aacatctaag aagagaagac       780
     tttaacgatt tctccagcat gctacgccta gcccgttcaa tagagattga agagaatcat       840
     catcccggtc agcagcccag tggcagatca gcaaggtggc gcagtggtgg tgcggctcag       900
     cccgcgccgc tccctccgcg ccgctccgca gcgccgctcg cgccgagcac ggccagcacg       960
     ccacccgacg ggacgtcaca acagtcaacg gtcgtttcag atagtgccgc gagtccgcgt      1020
     ccgaaacata atgtcgcgaa accgaaatgc gtatattgta aacaatacgg acacgtacgt      1080
     gaagattgta ttaagttaag aaagtgcagt gataatgata aggctcttca ttgttatggt      1140
     tgcggtgcga aaggtgtact gaggtcgcaa tgtcctaaat gtagcaataa cttatcgttt      1200
     tcatcggtaa ctatcgaaaa taattatgca ccggctttgg taagtaaatc caaacgcatt      1260
     acgaagtttt ccgatgtcac tccaagtcac gatattcccc gtaatagtga tagaagcgat      1320
     agtaataatg ttcaactacg taaacaaacg cgcgggatgc gttctaatag ttatgttagt      1380
     tattcacctt acgtagaatc acaatcgtgt gcttgtctta ataatatttg ttgttgtgtt      1440
     atagagttat ctaatattta tccagatatc cctatttttg ataaatgtaa tagtgatgta      1500
     cctattaggg tcgatggttc tattgtcgat aaatgtaata gtgatgtacc tattagggtc      1560
     gatggttcta ttgtcgataa atgtaatagt gatgtacctm ttagggtcga tggttctatt      1620
     gtcgataaat gtaatagtga tgtacctatt agggtcgaag atccttttgt caataaatgt      1680
     tatagtgacg tacttgttat cggtaaacgt aatagtccat cgcctgttag ggtaaactca      1740
     cctgctatcc ccccgactcg tggatgctac ttctcaaacg ttgatcagtt gaacacgcct      1800
     tcagtagttt cttttgcatg cgccgacaat acggcgacta ctactgttcc tttgggtggt      1860
     gttatgcctt cggtcttgct cgcacctagc gctttgcatg cgacgaccgt gcactcgccg      1920
     caacgaagac ctgtacttag cattcaggtt cttggtctac gtggcatggc tctgattgac      1980
     acagcagcca agtgttctat agcagggcac aagctttata aaatatttat ggagaagggg      2040
     cttacttttt acaccaagca ggttaatgtg aagctggctg atggtgttgt ccatcctcgc      2100
     gagatcctgg tggcaggcgt cgacgtcatc atcacagtgg acaaaagtgt tcgagtggat      2160
     ttcatcattt tccctgatgc tgacaataac gacactctcc tgggcatcga cttcctcaac      2220
     gctgcaggta tggttctgga tttctctgct tcttcttggc acttctccgg ctgcacgcag      2280
     acatacccgc ttgagtttga gggtgaagct atgctacgac acgatccaat ctccgtgtct      2340
     tctatgtcgc taagggctga cgaaggcttg ctgcttacca gcgatcagcg cttgcagtta      2400
     actaaattgc ttcaacgcca tgaagatgtg ttccgtctag gaggagaggc gactcgcttc      2460
     gccgaacatc aaattgacac cggagatcat gcacctatcg cggtgccccc atatcgcctc      2520
     acgcccgcta agagggccgc aatggaggca gagatcaaga agatgttgtc tgatggtgtg      2580
     attgaggagt gcgagtcggc gtgggccgcg cccgctctcc tcgtccctaa gaaggatggt      2640
     acgtatcggt tctgtgttga ttaccgccgt ctcaacgcgg ttactaaaag caataattac      2700
     cctttgccgg tcatcgagga cctccttcac gccaccaaaa gagaggggta catgagtacc      2760
     atagaccttc ggtcaggtta ctggcaggta agcgtatctc ctgcggacag ggataagact      2820
     gcattcgtgt cacctctcgg tacgtaccgt tttactcgta tgccattcgg tctcaagaac      2880
     gccccggcca ccttccagag attgatggac cgttttcggt ctgggagcgt tttgaaggac      2940
     gttaccttat tgtgttattt agatgatctc ctggttctgt ctgaaggtga tttccaaaaa      3000
     catctggaag acctggaagc tgtatttaac cgcctacgac tgtttggatt acgtgccaat      3060
     agggataaat gtcacttcgc ctgtaaccaa gttaagtatt taggtcacct tattactccc      3120
     aagggtataa tgcctgatga gtccaaggtg caggctatcc agcagatgaa tgagcctgtt      3180
     aacctcaagc acttgaaaag cttcctacag acttgttcgt ggtttcgtaa gtttgtgcct      3240
     ggattttccg aaatagctca acctcttact aagctcacca ggaagaacga accgtggact      3300
     tggactgaag atcagcggcg agctttcaat gaactaaaga agaggctcat tacagcacca      3360
     gtcctcgtgc aagccgacta tagtaaacca tttatcattc atacagatgc tagtaattac      3420
     gctttaggtg ccgtactgtt gcaaggtgaa ggtaacgaca tgcaccctat cgaatattcc      3480
     agtcggctgc ttacgtctgc ggaacgtaag tactcaacta cagagcgaga ggcgctcgct      3540
     gtagtctggg ccgttgaaaa gtaccgccca tatattgaag gccaccccgt tatcctgcgt      3600
     agtgaccacc aaccgctaaa gtggttgtta actttaaagt ctcccagtgg cagattgatg      3660
     cgctgggctc tcaaattaca agcgttcgac atccgctacg agtatactcc cggtaaaact      3720
     aacgttattg ctgatactct tagtcgccct gcttgtagcg aggcttccca ggacgactgt      3780
     ggggtctgtt cggtaatctt ggacgtacct cgcaagagtg caaccgacct tcggtcggct      3840
     cagctggatg attctgaggt aagtaagatc atcaaagata tcgaaaacac cactgatacc      3900
     gttgcttcca cccgctggtt agagcgcggt taccttatgg atcagggggt cctttaccgc      3960
     tatgctcccg agactgagtc cgaagaacca cagttagtga ttcccgtttc catgctcaag      4020
     gatgtaatgg aagaatttca tgacgcacct acagctggtc accaaggggt agagcggacg      4080
     attaaccgca tcaaacagcg atattacttc acaggtatgc gtaagtacgt atcagactat      4140
     ctgaaaaatt gtgtagactg tcaaaggtat aagttttcca atcagaaacc ttccggactt      4200
     ctgcagacac cagtactaaa ccaacgaggt gaggtacttg ctatagattt gtttggtcct      4260
     cttccggaag cggagtctgg cgagaagtgg gtattccttg ttgaggatac tgccacacga      4320
     tgggtcgact tatacgccat caaggaggct acagctgaag tatgtgctaa attactgatc      4380
     gaagagtatt tccttcgata tggttttcct agacgtgtca tttccgacaa tggagtgcaa      4440
     ttcatttccg cggtgatgca acagtgcatg ttcttgttcg gcgtcaagca aaacttgata      4500
     ccactctatc accctgaggc taatccagct gaaaggaaaa atcgagacct gaaggttcag      4560
     ctggccatac tggtcaagaa cgaacaccgc acttggcccc agtttctagc ccaggtaagg      4620
     tttgccctca acactgcaac ttgttcaact acagggttga caccgtcgta catgatgtat      4680
     ggccgcgaaa tgcgaacacc ttttgacgca cagcatgact tgcgtgcgat cttagataaa      4740
     gaagcgtttg ttcctcaggt tacgccttat ctttctaaat ttattgattc actgcgggat      4800
     ataagagatc gagtcgagag acaacaagat cttaggaagg agtatgccga cacttcgcga      4860
     cgtccctctc cggtttttca ggttggtgac caagtattac taacgactca ctcccttagt      4920
     aacgcaccca aaggcttaac tcgcaagttc atgcctcaaa gggatggacc gtatacaatc      4980
     cagaggaaaa tcagccctac atcttacgag ttggtcgata gtcagggtca ggtcttaggt      5040
     tgttaccacg tttctgatct tgtggctctg attggtactc actctgagtt cctagaaccc      5100
     gtccaaccac gtcgtctgcg tggtcggcca cctaaggcta caaggaaagc gcgcmcctag      5160
     ttttaaccaa atcactcacg ggtcgatttc gtgacttgga ggaggagga                  5209
//
ID   Gypsy-52_SpEx-LTR repbase;    DNA;    INV; 457 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-457
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4181-4181 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 457 BP; 102 A; 158 C; 92 G; 105 T; 0 other;
     tgtagcgcgc gctatttaaa cttcccgcca cgcctcagtt ttcaaggtcc ttcgcggacc        60
     attcaaatgc gccaatcaca gcgcctgccg ccgacgcgga gcagttacgc gcccttaccg       120
     ccgcgagtcc gttctcaagg tctctcacgg accattcaaa cgcgccaatc acagcgcctg       180
     ccgccgcccg acgcgagcgc ctacgcgccc cctatcgccg gcgtcagtac atcttttcgc       240
     aacgctcgcg ctccgcgcgc aacacagtct gtccacacca ccattaagat attgacgcta       300
     gtcccgtccc gtagtccgta acacgcgctt aaactacatc caactgtaca actctgtttt       360
     gttacttttg ttcgattagt tcataataaa cgtttttgtg agtgtaacac gagtactttg       420
     ttgaacatct cgcaccaaac ccaaagtgaa ccccaca                                457
//
ID   Gypsy-52_TrVa-I repbase;    DNA;    INV; 9306 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9306
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 297-297 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 9306 BP; 2757 A; 1822 C; 1870 G; 2846 T; 11 other;
     aaatggtagc atsggcgtgg ttgtcgtggt tttacagtcg gcgatcggtt tagaaagcac        60
     ttgttgaatc taagtaatga tcttttaata atcgtgtccc cttttcgtgt agttttggtg       120
     aattgtgaag tgtaattttt gtgtgttaaa accggaatcg cggattccgg gatctcaaaa       180
     ccgcgtggcg ggttaaatct ttgtcttcaa tcaatcatca tgagttcctg gctctctcca       240
     ccttatctca gcgtgcctct cccgaacgga ttccgaccgg cttcctgggg taagaagtga       300
     ggaaaaatca agtaagacca atcctttatt ctttattctt tcagttctgc cccagtgtat       360
     tattcatcct ttggttttcg ccctccttag ctgagtgtcc ttcttaatca tgtatgtgtt       420
     actgtgaata ctataacttt tcaggttaga ataatgagtt acaatgtgtg ttaaaacccc       480
     tctttttttt tttcatttcc atattcgaaa cctgctcgtc gaagtgggca gtgactcgct       540
     gagttcgtaa tatcttctta ttaaattgtg cccggatgac tagtgatcac agtgtaggcg       600
     acaatctcat tccgcatcaa tcaacgtgtt gagtaagctc aaatatctac atcaaatcta       660
     tgtgttcatc gatttgtggt gagtttttgt tatctgagta ttttgttctt tcgatcaggc       720
     ccgttccaaa gtgttccgtt aggtgtattt cttatgtcaa ttagtgtttc attagttatg       780
     tgtttatagt taaatggata gatgcgtcgt tctaggcgat agcaactttg tgcgcctttg       840
     taaattaaga gcttttaaaa atggtgtccc aatccccttg atcaatttat cccgttctgg       900
     tgcaaaggtg gtcgatggac taaacctttt aaaaagttat ctaagtgtgt ctcattatga       960
     aagtggatca caaacgatcg ttatcttgtt gggaacgaac gacttaagtc acaataacct      1020
     cttggatcgg aataattttt tgagaattac tcgtatcgcc agaaattgtt ttaagcaggt      1080
     gcttatttgt aaaattccac cgagtccaaa actagaccgg caattaattt caatatccaa      1140
     tcagtggtta tacaatttta aatcggtcga aaatatttct attgtcgatt tgttttctcc      1200
     ttttaatgat gcacacttcc ataagtttta cccgagtggt actcctgaca atattcattt      1260
     caataaccga gggttgcgac tagtttcctc tattcttgta tcatcgctct ccgaaattaa      1320
     tgtgtaggac tggtgagttt tagtacttca gagtagacta ttccgtttat taataaatac      1380
     aaaaaaaatg ttcagaataa gtccgagcct cctgctaagt gaccaggtat tagtcgaact      1440
     aaaaatcaga ggggttgatc ccccggcggg caacgccaat gattttcgac gagccttggc      1500
     acaaagccag aggttaggta gtgaacccgt tttggatcgt gtagctgagc ttgactgcaa      1560
     tgagcagttc gcttactgtt ccgctcgttt aattgattac caaacaaaga ttgctgaata      1620
     taaggaggat aatggtgttt cgggttcacg tcagttaata gctcgattgc agcatttggt      1680
     caatcggctt tactgcttgc tcctgacaca acttcctgcg gcgtcttcgg agcagttgcg      1740
     aggtttaaag gaggaggtct ctcagacgtt ggcggacttc gaagcgcact tgggagcgga      1800
     tcctgactta gcggatctgg ctcttatcca cgaagaagtc tctcgtcgag aatcattacg      1860
     agtgtctcaa cagtcagaac gtgttggtgg gaaccgcgac cgaacgcatt cggagtccac      1920
     caatgtctct gcagtttctt cattgcctga ggaccccgca gggattttgg gagagcaggc      1980
     agtaaaccag attccccaag ttgtaaatcc tgcaaatcct gttgtaggcc ccgctcctca      2040
     tgtccagcaa ttaatcgaac cagtcgctca agttccagtt gccgttccaa acaataactc      2100
     ggaagtgtta attaattata acccaattgt cgaaacccca cgaattagag gtaatcaaag      2160
     tactccggcg cctcccggtg ggaccggtca gggtcgagcg tttaattcta tggaccgccg      2220
     attagaaggc aaaatcatgc aaattcacct tgagaggagt ctgaaatcat tgcctgaaac      2280
     agacgggttg aatcctcata ctctcctcgt ttttcttaaa gttatgttac aacttagagg      2340
     gagacaaggg atgtctgacc atcttctttt tgaggtagtg cttcctttct ctaaaggact      2400
     cctagagagc caagttaaaa aggccttaga ctttggtttt acctttgacc gcttccaccg      2460
     tgaggtgttg aggaatttga tccctcacaa aatgttcgac cgtcttcgcg acacttattt      2520
     taagcggttg cagagggaac gggaaccatt agcgacgttc atcccggaaa tcaaaatggc      2580
     agctcagtta ctccgtttgg aactaactga agctgaagtg gttgacaata tcctaactaa      2640
     cgctaccaga gaaaaccgtg ctgacttaac ctttgaaaaa agaccgtgta actttgatga      2700
     attaaacctt gcatgtgtta ccgctcagaa tctgcgttgt gtggatctcg aacggacctt      2760
     cgctagcaat tatagaagca aatcacaaca acagcttccc gcaggtcctt cggggtccac      2820
     tcaacccaga aatctgggtg cacacaatgt tgagatcgca caaagttccc attccgacgt      2880
     cttcgcccag ggttgggtcg accctttgat gcaggctctg cccccaagtt tagtttatgc      2940
     gaatgtagtc gattcaatgg gaggtccacc acgaacctgt tttcgttgcg gttctttaag      3000
     acatctcata agagattgcc cacataatca aactcaagaa gcctttccaa aaaacgaggg      3060
     tggccagtag accattgcag ggtcgatcca cccccggccg aggaatcccc tgcaaccgct      3120
     aaagtaactg aaagagtgag tgtttgtaag acgattcacc tcccctatat tcgtaccgag      3180
     ttgggtaatt taagtgtttc ggctcttctg gactcaggag cctcgaggtg tctcatctcg      3240
     cctcatcttt accaccagtt acaaaaacga atcattgatc gaaccgtacc cactcgaatt      3300
     accttgaaaa ctgcaatgca ggatggagaa atggactcca ctttaattgc atttattaaa      3360
     gtaaaaattc atcggtatac ttgggttcat ccctttctgg tggtaccggc gcttcagtgt      3420
     gacttaatat tgggtgttga tttcatgcga aaaaggcgaa tgacccttaa tgtgggtgag      3480
     tcatggatct catttgcgtt caatcctgtt gataggcttc cggttgtctc cgcgatggct      3540
     ccatcatctc tccctcctaa acgccataaa acagatctga gcgacttctt acttcaggtg      3600
     gatgatagtg agagtggcct aacagcggat cagatccccg atctatctca cctgagtaac      3660
     aagagagctc aaagagtggt ggaggtcttg cggaaatatc cggaagtctt gtcaacaaag      3720
     cttggacgta ccaatgtgct agaatatgac attgaactaa cagatacgac cccagttagg      3780
     agttctcctt acccattggc tccccctaaa atggaaattt gccgtaacct cgtacaaaaa      3840
     ttattggatg aggacgtcgt agagttatca acatctaatt atgcgtctcc ctgttttgca      3900
     gttccaaaac cgaataataa acatcggttg gtagttgact atcgacgtct gaatgagaaa      3960
     gtaaaatttg aatccatacc gattcccgat ttaaaaaccg ccttcagttg gtttggaaaa      4020
     gctaaatact tttgcgtaat tgatctaaca caagcgtacc accagattgg gctgacctta      4080
     agatctcgac caataactgc cttctgcact ccgtggaatc tctatcagta taaacgcatg      4140
     cccttcggac taagcgttgg gggttgtgtc cttacacgta ttgtggatag agtgtttcat      4200
     gacttaaaat ttaaaaacct aattaattat ttggatgact tagtagtttt tggtgagtcg      4260
     ttcgaagaac ttgtcgggtt gctcgatgaa gtgttgaaaa gattgaaaga cgctgggctg      4320
     accatcaacc ccaaaaaagc tgcaaatcgc agtaaaagaa attatattcc tgggccatcg      4380
     tgtttcattc caatctatac aaatcgatcc ctcgagaact caaacaattc gagactttcc      4440
     aactccaaaa tcacctaaag ctatctctcg tttcatcgga atggtgggtt tttatgccaa      4500
     attcattccg aattttgccc attgggctgc cccattaaac caactaaggc gtaaaaacgt      4560
     tccattccga tgggacgaag agcacgaagc ttcattccaa catttgaaga atgcaattgc      4620
     aactcctcca gtattgcgaa tccctgactt taatcaggaa tttattttgc aaactgatgc      4680
     aagttccaaa gccattgcag gtgtacttat gcaggagttc gagggggtac ggttacctgt      4740
     tagctatttc tctcatcgtc tcaccgaagc agaaatgaaa ttcagtgctt atgaactgga      4800
     atgcatggca gctattctga gcatggaaaa cttccgccct ttcttggaac attcagagtt      4860
     tcttttagaa acagataacc aagcattaag ctgggtattg tcacatccga aacagcaagg      4920
     acgtattggt cggtgggtgc tgagaataaa cagtttcaag tttcgggctt cgcacattcg      4980
     gggaactcag aatgttattg cagactgtct ttcccgaatg ttcgaagaag ttcccgcaaa      5040
     cgaaacgact gagcagtgta atgtggcaag agaaggcttg gcaatgtttc cattagcatt      5100
     taccgattta caggaacacc aaaaacaaga tcccagattg tgtgatttgg ttaagcaact      5160
     gcgatgtggc gagaccatac cagggtatcg gctaaacaga aacctcttgt atttcaaacc      5220
     aaataagagt aaaaccgagc gaatagtctt accatctcaa cttgttccaa tggtatttaa      5280
     attctatcac gaattccctc ttggcggcca tcttggttcg tataaaacaa tcaacaaaat      5340
     tcaagaactg tttacatacc ctggtctggc ctccgacatc aaagagcgaa ttaaatcatg      5400
     tactatctgt gcgatgagca aacctgcaca aaatgcgcga gtgggagaga tggtgagcga      5460
     agtagctagc gggccattag agaaattatt cgtggacttt gttggtcctt ttgtgagatc      5520
     gaaacgagga aataaattca tcttgactgt ggttgacgcg ttcagcaagt tttgctggat      5580
     taatccaaca aaggagtcaa ctgcagaagt tgttattaaa gaattacaaa gaatagtgaa      5640
     agatttcagt ttcccgaaat ttgtagttac tgataatgca aaacaatttc tggcacgaaa      5700
     attacataat tggctatttt tacgtggaat acaacatcct acgactacac catactaccc      5760
     taatccttct catgctgaac gtgtcaaccg caatctgaaa gctgcactga ttgcttatca      5820
     tcacaacgat cataccaggt gggacgaaaa cttagagtgg cttcaagctg cctttaatta      5880
     cgcccgtcac gagtcacaca gaatgacccc tcatcaatta atgtttgcat atgctcctaa      5940
     taaccctttw gcgttacaat ggggaattca agatttattg cccgataatc caaacccaga      6000
     tgaaattaaa gataactgga atcgagcgaa gaaaaatcta acccaaagtc ataaaagagt      6060
     aaaacaacga tatgataaaa atcacaaagc ccataattat agaagcggag acttagtatt      6120
     cgtaaaaaca catcacctta gtaataaaat taataagatt atgaagaagc ttatgcctcg      6180
     gttcgaagga ccattccaaa ttcagaggtt cgtaactcca gttaccgtgt tactgggtaa      6240
     tccagaaact ggaaaaattg tgaaaagagc gcatgttacc cagctaaaac cattcatcaa      6300
     aaaaggtgaa gcggggggtt ctcctgtctg attcgtgaca gggttaaaca tccgcgactc      6360
     ctgagtccaa atcccggccc aaaaacagct agcgtaatcg tgataatatc atgcaaaaaa      6420
     aagttttgaa gtgtgagctc ctgagggaac tgtgacagac cagggacatc ctattcgtga      6480
     aagaagaagt actggtctgt catctttctc tcacctgcct acttcgaact gaattcttga      6540
     ttgtggtctt gcttgaaaga actaaatact tcggaacatc acggaatgct aatttctagg      6600
     tcgtgggcgg agtgagatcg ccgttatcat tgtatcmttg tatcattaaa taattgtgtt      6660
     atatgacttc atagtgggat gctcagttga ggggattgaa aagccaagga attaagtaag      6720
     agtaaatcaa atttacgtgg ttttggtaat ttatccacac acaaataaat taacctcatt      6780
     agtcgtaaca aacaaaagtg gctgggttgc gatgagtgtc gtttcggggt gtgcctttgg      6840
     tttggagtgt agttgtttgc ttgccaagga cttgacaaga gtttgtcaag agacgcaagc      6900
     aatacagaat ctcaatttgt ctggaggaac gccttgggac ggcattcatc tcaatccaac      6960
     ctcagtcgtt tcattaaata attttttttt ttaagctgtc aaaaattaat aggtcgattc      7020
     cattgaaaaa gattgcttac atctcgttaa ccttcaattt tgttttcttt ttttatctta      7080
     tgttgtttgt tttgtcattg atctaaaatc gtcaaattaa catttctatt tcaacaccaa      7140
     cagatttaat ctgataatct ttattgtaaa gaggtaaatt acctttttcg tgtatcacat      7200
     aacactaaag ttttcacaat aattgataac tgatgcttca tttaatgaag ttatttwttc      7260
     cctatctgcg acaaatttag gtttataata gatgtaagaa tagttcttta tggtcaaatg      7320
     attagaattt tcaaagaaaa aaaaaaaatt ctaaggataa aattctagaa attatttttg      7380
     gatttaaacc aaaaaagaaa ttaggatcta tattttagga ttatgcttta ggtttaggtt      7440
     cccgactgtg acttagtttt aagaaaaagc aatacacacc cgctattgca tgctatccgt      7500
     ccgggtggtg taaccggatg gaaagcaatc aaccaaaaaa aaatatgtat gaagccacat      7560
     ataatatgtg cgctgatata cgaatgactt tatatcggta tatccaattt tatatttttc      7620
     attggttctc gttcttttat aacctttgtc ttatgttctt cgattaattk atttcattca      7680
     aaatgacaat ttatatacta ttaatttatt ttactcaatg atttgcgttg ttaaattwta      7740
     tttttttcat atgttgatgt taaacatctc aaaaatttgg agagtgaggc ttcctccatt      7800
     ctgcacactt ccattatgat tttattggat caactttcgt cgattcaatg gtgaccatcc      7860
     aattctccct gaaaatcgag gaaaagtagc ggtcgtgttc agcatggagg atgcattact      7920
     tatagtggaa tcgacccgac agttaaaatt ccaaaaagga aaaaaaaaat ggaacaagga      7980
     gggtagatac gaaaaaatcg gagccgcgga agaggtccga ccaaatatct gcaacgtcct      8040
     ttgttgccta aattttatga atacttgcta aggactctag ctgagtttgt aagagagacg      8100
     caagtaggaa taaatgaaaa ataaagttaa gatgcccagg cggccaaacc acaaaattgt      8160
     gtagttgaat ttckttaaka tttgtttgcc tttttgttct tatcgaaagt attgtcgaat      8220
     gttttgtttc atcttatttg agtcttaacc cacggtgggt catttcagtt gcacctgtaa      8280
     gtaagtgtat atatctttca aaaaaaaaga atactgtgat ttctttccgt ttatttcctc      8340
     aggtatctcc tgttctctgt gtgttatttt ctgtaattat atttcaggtg aatttgtaac      8400
     cttcgaagtt attttcgtat tgttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      8460
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaggaaaaaa aagcaaggaa      8520
     aatatgtgtt tttgtaatta tctctcggct gtgttctctc gtttgatttt taacaacaac      8580
     aaacaaaact atgtgagttt tgstgtgttg gctgtgtttt tttttttata ctatgtacag      8640
     tttccgatca agtgactttt gtttactatg ttgtactagt gcgtttaatt tttcgatgta      8700
     aatktstcgt gtatgaatca ttttctattg ttttaaaaaa tgtgtaattt ttgtaattgt      8760
     aatgagtaat tttcaaaatg taattcttag agggtggctc ccaaagtatc gaaaaattca      8820
     accagttttt cctttttttt ttaatattcc agtaaaagta atatataagg tgacgttaaa      8880
     attatgaatt gttctcttgc aacccttgct gtctttataa agtgttaatg taatgttttt      8940
     cttcctgggt acttcaccaa cgcaatacaa ccaacgtata atcactaggt acaaaagcct      9000
     tggtgggacc atacagagtt taaaaaccct gggtcataac caccagcgtc ctaataccta      9060
     tttccttaga gaccctttac ttctagtctc attgattttc ttttggtgcg tttggtgaag      9120
     attaactttg ataatcttgt tcgacccaaa ttattttact tacatttgac cttaaactgt      9180
     tttctgactt gacagcatca atatctgcgt tattattgta taatttgtac ctaacaaaaa      9240
     aaaaaaaaaa agaaaaacaa gcagcaagtc tcgaggactg tgtcctcggt taaagggggg      9300
     gagaac                                                                 9306
//
ID   Gypsy-52_TrVa-LTR repbase;    DNA;    INV; 555 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-52_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-555
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 356-356 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 555 BP; 141 A; 128 C; 101 G; 185 T; 0 other;
     tgtgccgagt tacggcacaa aactcgtttt tttttatctt ttcctcgccg atgcggtcgc        60
     atctcgtctc aggacgaggt gcgcgcgcat cggcaaggca tgacgtcacc agcgaaggct       120
     cccgtcgaaa cctctcgcac gaacgctgac agccatcttt taagtcgccg ttggagtccg       180
     ttcgagagtg gtcgctgaga gccaggagct ttaatttttc atcgtgtagt aagcctattt       240
     taaaatcatt gaattgatct tttcctttta atcaatcccc tttctctttt tctttaaaat       300
     gtaagagcca tctctcttcc ctttttcttg atttaaaaaa ttaaataaaa gtaagaagaa       360
     tgtcagttaa accgtaatcc gtttccttaa attttctttc aaaacctatc cctgattgtc       420
     acgacccact gggtcttctt ttaatttcaa ttatcctctc ggatcccgat tgttaagatc       480
     tattaattaa tggggatcga ttgagggtaa tgacgaaact ttgaacatct tcttttaaaa       540
     acccaaagcg tttca                                                        555
//
ID   Gypsy-530_AA-I repbase;    DNA;    INV; 5311 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-530_;
KW   Gypsy-530_AA-I; Gypsy-530_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5311
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5311
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5311 BP; 1628 A; 949 C; 1364 G; 1370 T; 0 other;
     tctggcgacg agtataaagg tatttatttt aaatatttgt aaaactggat aaagtgcgtg        60
     caaaaccgtt tttctcatct ccgtgaaatt ttcaagatgg ctgaaacacc aaatgttcag       120
     gtcgatgatt cgagattgag ttgaatcaat gatcggccat attggaaaag gttgagtcga       180
     aaagaatata atttgtaaag tgttctgggt ttaaaaattg aaattcattg taatgtagaa       240
     tattggtgtt agattgaaca cttattgtac cgtgataatt acacagattc ctttttctga       300
     gccttttttg gatttattca aggggttttt cctcaagtcg acctactgag ttgaaaagta       360
     cttgatgcag catatgttaa acaatgtgaa aaaaaagaag aaaatggatg ttttacatgt       420
     tggacagtag tgaggtacct aagagagaac tatggtaggg tgcctagttg gaattttgat       480
     gcagtggatc atggcagggt gcccaacagg agaagtttgg tagggcgcct ggttggaaat       540
     tttagagaag tggatcacgt tagagtgcct caaaggagaa ctgtggtagg gtacccagtt       600
     ggaattttga taaagtgttt cgtggcaggg tgcccaagag aagaactggt agggtgccaa       660
     gttggaattt tgatgaagtg tttcgtggca gggtgcccaa gagaagaact gtggttgggt       720
     gcccagttga agtaatggat gtctcgagaa ctataaagat taattgggac agagtgatta       780
     gaaatttaac cgtggtaggg tacctggtta attacgtttc acagaactgt ggtagggtac       840
     gcagttcaga atcgtggaag ggtgcccgat tgaagttgct atgaaaactg cgttaaaaaa       900
     attgaatcat ggtacgggtt aacgttaacg tcagaggaat tgtgatgggg tacctggctg       960
     aagttttcta ggattatata caatagttaa tcgtgaaaag aacatggtag tagcctccta      1020
     caattcctga tcattatttc attaagagat gctttgttaa atgagcttct aaacaaatgg      1080
     ttttatggat tccgcgtttt cttttgtctt tttctagatg gaagaaagcc ggccgatccc      1140
     gatgttcaga tgtgaagaaa ttgaaagtgg gaaattggcc aagaagtggc aagaatggaa      1200
     gagttcactt gaatactatt ttgatgcgtg ccaagtgcac gatcaaaaga tgatgcgttc      1260
     caagatactg cacttgggtg ggccacagct acagaaggtt ttcggtactc ttgaaggtac      1320
     cgaagatttt cccttggtaa tgttggaaaa gcgttggtac gatgtagcag ttgatcgtct      1380
     ggatgcgtat ttcaaaccac gtaaacagga tgtactcgaa cgacacaggc tacgcggtat      1440
     gaaacaggaa tcgaacgaac gtttttcgca ttatgtgctc cgtctacgtc aacaaataaa      1500
     agaatgtggg ctggacaaat actcacaaga ggtgaggagc gttatggaag aaatcatgtt      1560
     ggttgacgtt atcgtggaag gctgtacttc ccaggaacta cggcggaaga tccttgagaa      1620
     ggatcaatca ttgtgtgaca tcgaggtgct cggagaatcg cttgaaagcg tgcgggttca      1680
     agaaaaggaa ttcaagattg gaaacagttg cagcgaatca gggtacaacg aagttggcaa      1740
     agttcagtat gtgctgaagc cacgaaaaga gcgcagagag gagcgaatca tgaacaagtt      1800
     ttctacagct gcatttacgt cgaacaacga aagaatttgt tttgcgtgcg gtcacccggg      1860
     acacatgtcc agatcgcctc tgtgtcctgt gaaagaccag aaatgccgac gatgcaagaa      1920
     accaggacat ttcgaaaaag tcagtcgtaa gcgaccgttt gacccacgca tttcgaacac      1980
     tccgaagaag gtgcaaatag tggaagatgt acaagatgca gtcgatgaca caccgcagtc      2040
     agaaccacat gcagcgtcgc agacagcacc acggccgaga ggaaagttta ctacacattc      2100
     tacactggga gtgaaacgaa cgttttcgaa tgtacgattg gaggagcgaa gcttggagtg      2160
     ttcatcgatt caggatctga cgtcaacctt atcacatcag atgcctggga gaaactgaag      2220
     gcgcaacaag ttgttgtttc caaatgtgaa cgaggtagca gcaaaatatt gaaggcgtac      2280
     gcatccaacc aaccgctaac aattttggga tccttcgaag cggtaatcga gattggaaaa      2340
     cgctctgtag aagccgaatt ccttgtgatt aagcatggac aacgcaattt gctcggagac      2400
     actacctcga aacagttgag gatcctgaag atcagtttgg atataaacag agttatggaa      2460
     aaggaaattt acaattctcc gttctccaag ataactgata caaaggtacg catttctatg      2520
     gacccatcga tcactccggt attccaaccg ctacgacgca tcccaattcc gttagaggga      2580
     gctgttaatg agaagttaga cgagttactt ctgagagata taattgaacc aaaacaaggc      2640
     ccagcgacct gggtatcgcc gttggtggtt gccaacaagg cgaacggcac tataaggttg      2700
     tgtgtcgacc tacgacgggt taaccaggca gttatccgtg aaagacatcc catgcccgtg      2760
     attgacgacg ttctagctaa aatcggtaaa gggaaagttt ggagcgtcct ggatataaag      2820
     gacgcgttct tcctattgga gctagaagaa gagtcgagag acattgtaac attcatcaca      2880
     caccgtggcc tgtatcggtt caaacggctg cctttcggcc tggtatcggc tccagaaata      2940
     ttccagcgga agatggatga aatccttgcc gactacgagg gaacctactg gtatttggat      3000
     gacgttggaa tagaaggaaa ctcggttgaa gagcatgatg aaagattgaa gaaggtatac      3060
     ttctgaaaac ttgaacaaat aaaggaagca ttgcttaact aatccattga atttcatttt      3120
     tctaatttat atttcaaaac gtattgctct ataggttctt gacagattcg aggaaaaagg      3180
     agttattctt aactgggaaa agtgtaagat acgtgtaacg gattttgagt ttcttggata      3240
     tcagatcaac ccacaaggaa tcttgccgtc agaacccaaa cgtgatgcaa taatgtcgtt      3300
     tcgtcaaccc caaaatgaaa gcgaggtcag aagttttctg gggctcgcaa attatatggg      3360
     aaaattcatt ccagacttgg cagctataca cgagccactc agacgactaa ctcaaaaagg      3420
     tgctaaattt cattggggtg gtcatgagga atctgcgttt catgcagtga aacgaagtat      3480
     ggcaagtgct ccaaggttag ggttctacag gctggaaaac aaaacatctg taattgccga      3540
     cgcaagtccg catgctcttg gtagtgttct tatccaaaca gactcgagtg gggattcata      3600
     tgtcatctgt aacgcttcca agtcgttgac agatactgag aaaaggtact gtcagacaga      3660
     aaaggaagca ttggcattgg tctggagtgt ggaaagattt caggtttact tgatcggtaa      3720
     agaatttaac ctgctgacgg attgcaaagc tctgactttt cttttcacct ccgtgtcccg      3780
     tccatgtgca cgcattgatc gatgggtatt gcgtctccaa agcttcaagt acaaaatcgt      3840
     acatatttcg ggaaaaacca atatcgctga tgctttatct cgcctttcga ccttcgttcc      3900
     aatacctttt gatgaggcag aagagctagc agtgaacgaa gtgattacag ctgctgcgaa      3960
     aatgattgct atcaaatggg aggagataga gagtgtgagt cgtgatgatc ctgaaattat      4020
     tgaaataagc gaggctttga agtcaggtac atatgatgat ttaccattgg cgtacaaaat      4080
     cgtttcatca gaactgtgca tggtcagcaa cgtgcttttg cgtggtgaca agatcgtagt      4140
     gcccaataac ctacgtaaac gggttcttca gttggctcac gaaggacacc cgggcataag      4200
     gatcatgaaa acacatttac gaggaaacgt ttggtggcca aaaatggacc tggaagtaga      4260
     acgatttgtc aaggcatgcc gtggatgttc cttggtgtca gcaccaaatg catcggaacc      4320
     aatgatgagg aaagatcttc cgctgcgggt ctgggaacaa attgctgtgg attttctcgg      4380
     tccattacca aacggagaga atttactggt ctgtatagat tactacagta gatatctcga      4440
     ggttgtagag atgttgaata tttcaacatc atctacaatt agagagatgc ttacgatatt      4500
     ttccctatac ggaatacccg aagtacttcg agccgataac ggaccgcagt ttgcatcgga      4560
     agagtttcga ttgttttgtg acgagtacgg cattcatctg gaaagcacta taccttactg      4620
     gccacagatg aatggagagg tggagcgtca aaaccgatcc attctgaagc gattgcgtat      4680
     agcccaagag cttggccatg actggaggca ggaattgcgc aagtatctga tgatgtacca      4740
     ctcagctaat cattcgacaa ccgggaaggc cccagccgag ctaatgtttg gtcgtaaaat      4800
     gcgaaccaaa ctaccatatg ttccagcgat gacatttgat tctgaggagg tcagggatcg      4860
     agacagctta gagaaagaaa aggggagagt gtatggggat aatcgacgaa gagcgaaaca      4920
     tagtactatt aaggtgggtg accgtgtgct ggcaaaacga atgaagagag acaataagct      4980
     gagttcggaa ttcggaccag aagaatacag tgtggttagt aagaagggta ctgaagttgt      5040
     gattcggtca actgagtcgg gtaaggaata cagaagaagt gcacctcatt tgaaacccat      5100
     ttcagcaaat gaaaacgaca gtacagatca ggcttcagat gttgaaaata atgcaggaga      5160
     agaactgata gtattagaca ataatcaggg agaaggtagt tccgaagagg cagtaagggc      5220
     gtctaagagg atcaggtcag aatcgaaatt attgaaggat ttctttacgt attaacgact      5280
     gtgttttaaa acaaataaag aaaaggtggg g                                     5311
//
ID   Gypsy-530_AA-LTR repbase;    DNA;    INV; 295 BP.
XX
AC   .
XX
DT   30-APR-2019 (Rel. 25.10, Created)
DT   30-APR-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-530_;
KW   Gypsy-530_AA-I; Gypsy-530_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-295
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-295
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3154-3154 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 295 BP; 82 A; 59 C; 75 G; 79 T; 0 other;
     tgtagggttt gaatgtataa accttggctt tttattatct gtcctttctg ttttatcttg        60
     tggaacagca cgaacgacga ccgttcgtgc agaagaagga aacgacgacc gagaatcgtt       120
     gcgggcgaga aatagaccgg gagaagtatt gcgaccatcg tagtggaaag atcgttagtg       180
     cctagtgtgc gaagagcacc taacattgtg tgttttatat accgagtttt tggtgaacat       240
     ccgaacggct tgttcgatcg gcaaacccca agaaaacctt ctggaaaacc ctaca            295
//
ID   Gypsy-531_AA-I repbase;    DNA;    INV; 5292 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-531_;
KW   Gypsy-531_AA-I; Gypsy-531_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5292
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5292
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5292 BP; 1742 A; 855 C; 1152 G; 1543 T; 0 other;
     aagtggcgac tgtaggagaa gatttttttt ttttttcaaa tttggtgatt tgagaagttg        60
     tgtaatattt atctcagcag tggtttgggg aagcgtgcat aatcaattgc cctgtgagag       120
     aagaaatcag tattcaaaaa tctgcatagc gtggtcagtg ggctaggaca aagcatctga       180
     cacgtgggtg tatattagaa agagattgca aagtgatatc gacattggtt ggatagtgaa       240
     aatcgtggaa tagcgttttc atgaaaattt catgccgtag ttaacagata agtttcattt       300
     agattcaata aattttacga tcaattcagc cattttgtaa cttggaagtc aagccttaga       360
     aaatttgtaa agctgatatc ttttgtgtat ggacaatagg ttgaattgtg tattgaacga       420
     aggatcagtg ccagctatta tacggtgagt tgagtgtgag aacaaaggtg agacaccggc       480
     ggcccgatag tgaagcgtga gaactgttaa agtgagtatt gagtataccg aaaggctttg       540
     aaggcatcag tgagcgaggg aaggcatcag tgagcgagag aagacatcag tgagcgagtg       600
     aagacatcag tgagcgaggg aagacatcag tgagcgagag aaggcatcag tgagcgagag       660
     aagacatcaa cctttggtga gcaaccaagt agaaattgat tgagtgacgg ctgaaattag       720
     ttatcggaga agagaaacta cgattggtac cactaggcaa tccacgaagt gtacagcaac       780
     actagagcac gtttggccgt tggttcagcg acatcagcgg ggtgctgtgg aataactggt       840
     gattcaacca tgtcatcttt gatcggcacc gtggatcatt atgtgcgtgg ctccagtttt       900
     ggagattata tggaacgcat gaacatttta tattctttga acaacattcc cgaagctaac       960
     aaaaaaaatt tgttcataac tttgagtgga ccagtaatat ttgaagaggt caagttgata      1020
     tttccaggag ttccaattgc gtccataaat tatgaacaaa tgattggaaa acttaaagag      1080
     cgtctagata aagtcaaacc taacatgtta tacagacata aattcaatgc tcgtacacag      1140
     ggtgttgatg aaccagctga gaactatgtg ttggctttga aattgttagc gagccagtgt      1200
     ggttttggtg catacaagga tgaagcagtt aaagacaaaa ttattttcgg tttgcgtgat      1260
     gaggaattaa aacacacttt actaatgaaa gacaatatga cgttagaaga agttgaagaa      1320
     ttagtggtac gtactgaatt agcaaaactt cgcgcaaaag agtgtaaaga tagagatgat      1380
     atggtaaaga gtgtcaattc tgtgaaatat cgtttgggta atagaagtga tcaggatggt      1440
     ttcagcaagg acagcagatt gacgcgcgca tatgacaatc ggtatcgtag tcgcagtaga      1500
     agtttgagta gagaacgtga tcgtgtattc aattataacc gaaatgaccg taggaattat      1560
     cgagatgatg aatctaaacg ataccaagcg cgtcgcgttt atgaagatga caatccgcat      1620
     gctaatgtca tttgcaatta ttgcaaaaaa cgtggacacg taaagcgaaa ttgttttaag      1680
     ctcaagaaca gaaaacatgt gaattttgta gaggaacaac agatggatag ctatgatttc      1740
     aaaaggctta gtattaggga ttcagaggat gaagaagtcg actacccatg tatgatgatt      1800
     tctactaaac ataaagtcag taagccttgc cttgttagcg cgttgattga gaaaatcaaa      1860
     ttaaacatgg aaattgattg tggtgcggca gtttcggtta tcagtttaac gacatacaag      1920
     aaacatttct ttaacatcca agtatccagc tgcaatagtc gtttagtggt agtgaatgga      1980
     caacagttgg gcatattcgg gaaaatggac gtggacgtta ttgttaacaa cattcagcat      2040
     gaggtctctc taatcattct agacggtcca ataagtttcg ttcctttgtt gggcagaaat      2100
     tggttagaca ttttctatcc cagttggagg aacatctttg gaagtagcct gaatataaac      2160
     tatgtaaatg acaaacagca gatatcaacg ctaggtaata ttgaatctga tctaaaattg      2220
     aggtttccaa aaatttttga cggcgacttt tcgcatccaa taatagggtt tgaagcggat      2280
     ctagtactta aagaggaaag gccggtgttt cggaaagcgt atgaggtgcc cttcaaatta      2340
     aaggacaagg tgatcgaaca tttggattcc ttggagaagc agaatgttat aactccgatt      2400
     aaggttagtg aatgggcatc tccagtaatc atagtgatta agaaggataa agagatcaga      2460
     atggtgattg attgtcgtgt ttccattaac aaatccatta ttcccgacac atatcctttg      2520
     ccattagcgc aggacatttt cgcttctttg tcaggctgca agtggttttg ttgcctggat      2580
     ttagcaggcg catacactca acttcaatta tcgaaaagat caaggaaatt tgtggtgatc      2640
     aatacagtaa aaggacttta ttcttacaac cgtttgcctc aaggagcgac atctagcgct      2700
     tctatattcc aaaaagtcat ggatcaaata ttaataggca taaaacatgt gcgagtctat      2760
     ttggacgatg tgctcattgc tggcgagaca aaaggggagt gtgaaaaaaa tctatatttg      2820
     gtgctaacta gacttgaaaa agcaaatatt aaggtaaact ttaaaaaaat gtaaattttt      2880
     tgttcaatct cttatttatt taggacattt aattacagaa gatggtcttc ttccatcacc      2940
     tgataagcta ttgaccatca aagaagcaaa agttcctaga gatgtcacag aactaaaagc      3000
     ttttttaggt ttaataaatt attatggaag gtttgtaccc cacttgtcta cgaagctaag      3060
     atgtttatat aatttactaa gaaaggatgt gaagtttatt tgggacgata agtgtcaaaa      3120
     tacctttgaa gaaagtaaaa cagctctaat caatgccaac attcttgaat tttatgatcc      3180
     agataagcct attatagtgg tatccgatgc ctgcagctac gggctcggtg gagtattagc      3240
     tcacttaatt gatggacaag agaaacccat aagttttgtt tcgttttccc tcaactccgc      3300
     acagaagtcc tatcctatac ttcatttgga agctctggca ttagtatgta cggtgaagaa      3360
     atttcataaa tttctatttg ggcaaaaatt cactgtatat acggaccaca agccactttt      3420
     gggaattttt ggaaaagatg gcaaaaacca aatttgtgta acccgattgc agagatatac      3480
     tatagagctc tcaatttatg agttcgatat atgttatcgg ccttcgtctc aaatggctaa      3540
     tgcggacttt tgttccaggt tccctttgga acagggtgta ccaaaaataa tagataacgg      3600
     atgtataaag accatcaatt tttttagtga ttttccgtta gactattctt taatagcgaa      3660
     ggaaacaaaa tctgatccct ttcttcaaaa ggttgcggaa tacatcaagg atggctggcc      3720
     caaaaaagtt gaaggaaact ggcaaactat gtattcttta cgttttgatt tggaattgac      3780
     acaagattgt attttataca atgatagagt agttgttcca tcatcactcc gaatggctgt      3840
     tttgaaattg cttcactcaa atcacattgg catggtaaaa atgaagcaga cggcacgacg      3900
     ttgtttgttt tggctcggat tgaatgctga tatcgataat tttgttacgc agtgccaaat      3960
     ttgtatgaaa acagctgtat taccaaagcc aatttgcaat agttcttgga ctcaaacgac      4020
     acgccctttt agtcgtattc acgccgattt ttttttctcg aatctaaaac ctatttgctg      4080
     gttgtggaca gctacacaaa atggcttgaa atagagatta tgaagtatgg aacggacgct      4140
     agtaaggtga taaaaaaatt tactgtgatt tttgccagat ttggactccc agatgttcta      4200
     gtgactgatg gtggcccgcc tttcaactct tcccaatttt gttcgtttat ggaacgtcaa      4260
     gggataaagg tcatgaaaag tccgccctac aaccctagca gcaatggcca ggcggaaaga      4320
     atggtgagag ttgtaaagga aattttaaaa aaatttatgt tagacccgat gacgagatct      4380
     ctcgatgttg aagatcgatt aactttattt ttaagcaatt atagaaatac ttgcacttct      4440
     gacaacaggt ttccgtctga aaaaatgtta aattttaaac caaaaatttt aatggacctt      4500
     ctacacccca agaatcatta caaagaacat ctcaaaattc ttcctgaacg ggaagagtct      4560
     tttatagatg atactaacag acaaacttcg gatccgtttc tcaagctggc tttaggagat      4620
     aaagttcttt ataaaaatcc ggataaacat gcaattgaga aatggataga agcgcaattt      4680
     gtcaaaagag tttcactaaa cgttttcgaa atatcttttg gcaggaatac aaccaaggct      4740
     catcgaaatc aattacgaat agttccacct cgaccaacga gcactactat acatattcca      4800
     atccaacgag aaaagcgacg ttacagtgag agtgaatctg aagaggagtt tcatggtttc      4860
     cctgatgtcc cggcaattcc gcatggagca cagtcagaaa atgtgggcaa acgactcaag      4920
     tatacccgac gaagtccgat tgcaacacgt agctcaactc gatcgaaact ccaccatgat      4980
     tagacaacgc cgaatagaca gatcatccag tagcagtgaa gtacgttccg tattctcatt      5040
     gagtcctggg aaccggccaa aaatgaaaat atttcatata attgcaatat aaaatgtgtt      5100
     aagttattaa ttcaatgaat tgtcgaaatc aagaagaaat aatttctagt ggataagttg      5160
     aaagtaaatt ttgaatagca taattgaaat tttaacatta ttaaaagaaa attaatgttc      5220
     atgttctaca tgatttcgaa ttagtttatt ttttaaggaa atgttcagag tagttacttt      5280
     aggggaaaga at                                                          5292
//
ID   Gypsy-531_AA-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-531_;
KW   Gypsy-531_AA-I; Gypsy-531_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-181
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-181
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3155-3155 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 181 BP; 65 A; 31 C; 30 G; 55 T; 0 other;
     tgtactgttc gaccaaatat ccaaaccctg tcagaaacac acacataaat gttttatagc        60
     aagtctgtgg attaaatgaa taaaacagac catcgaggtc tttagttctg gactgtgact       120
     gagagcagac gtgtttcttt atagttccga aatatcttaa aagtttatac aaaaattata       180
     a                                                                       181
//
ID   Gypsy-532_AA-I repbase;    DNA;    INV; 6196 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-532_;
KW   Gypsy-532_AA-I; Gypsy-532_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6196
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6196
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2027..3481,3357..3929)
FT                 /product="Gypsy-532_AA-I_1p"
FT                 /translation="MLQMEEPRQIASFRCDIIEKGKLSREWETWKWSLECY
FT                 FEAFDITDQKKKRAKLLHLGGVELQRVFRSLPDHAKTPLVTLNPKVYDLAI
FT                 ELLDSFFQAGRQNVIERRKLRKLKQEVNEKFSHYIVRLRQQSLNCGFEKYS
FT                 ADVCEILKEIYLIDVVVENCRSDELRKAILKRDRSLKEIEEIAATIEDTDQ
FT                 QMRELKEVNNPMRESSVYEVVRREKPSSATAKFDGERNQTSTVSNRRVAQQ
FT                 FPTRNTKTSCFSCGQTGHFSNSRECPARGRPCRRCQQLGHYEVVCRKRKAS
FT                 FPKSRIPEKVCTVEKLSESIKMSDEGDSTNDEKVYYAFYGGNETNVLDAAV
FT                 GGVQIKVLIDSGADANLIRAETWEMMKTQNVKVLKSTRGSSRILKGYGSDK
FT                 PLDVIGTFEAEVSIGRRSIVAEFFVVKGGQKDIIGDLTAKNLGVLKVGLDA
FT                 NNVSMEQKPFAKISGAEATIEMDPDVKPVFQPLRRVPIPSMQTTSAWSRSH
FT                 SQKSVELRRLSKWIQMSSRCFNLCAECRFHRDIIEVKKGPATWVSPLVVVG
FT                 KVSGEPRICLDLRRVNQAVLREHFPMPMVEEYLARLGKGKIWSKLDIREAF
FT                 HQVELNEESRDVTTFITNRGLFRFKRXPFGLVTAPEIFQRVMEEMLSGCEG
FT                 TCWYLDDVIVEGETSEIHDRNLKKVEL"
FT   CDS           join(3989..4630,4572..5819,5680..6171)
FT                 /product="Gypsy-532_AA-I_2p"
FT                 /translation="VLNRFKXRGVELNWDKCAFGVSKLDFLGHHISEDGIS
FT                 PSQTKLNAVSSFRSPTCESEVRSFLGLANYLNKFIPDLATIAEPLRNLTKK
FT                 ETTFKWTHVHETAFQIIKAKIASASTLGFFNVNDNTIVVADASPSGLGAVL
FT                 LQENTNGDRRVICFASKSLTDTERRYCQTEKEALALVWSVERFQMYLYGKP
FT                 FTIMTDCKVLEYLFTPRIEGVCKNLTVRFWSTCLPLVSKACARIERWVLRL
FT                 QAFDYHVVHIPGNQNIADCLSRLATVKPSAFDPDEEIAIREIAMQAGSTFA
FT                 LKWSEIKEESQKDSEISEVVLLLANANSEELPLSYRVIANELCSIDAVLLR
FT                 VDRIVIPRSLRSRVLEIAHEGHPGINMMKSHLRTNVWWPRMDQDVEKFVKN
FT                 CRGCTLVSAPNPPEPLVRRELPNQPWTDLAADFLGPLPEGQHLLVIVDYYS
FT                 RYMEVCEMKEITAADTTKELAIVFSRFGLPRTLRVDNGPQFSEKCDEFNEF
FT                 CESNGIKIINTIPYWPAMNGEVERQNRSILKRLRIAQDLGKDWRLELRKYL
FT                 LTYHSTNHSVTGKSPAELMFGRKIRNKLPGVPFEEIMDEEVMERDAMHKEK
FT                 QKVYTDAKRSATKKKSNYHRRPSSGEKNEESAWTKKLWSEMQCTRKNRRSI
FT                 LTLKDLLQKKSQITIGDRVVVKRMKKAHKLQSDYSPEEFKVIRKVGGDTTI
FT                 RSCDSGKEYRQNVAHLKKIATAAASDEEYEKQSHEAEVMQEKNCGSETCLE
FT                 ESVDVRRNMEIERKERQVESKENQKRTKRVTAEPKRYRDYIAH"
XX
SQ   Sequence 6196 BP; 2055 A; 959 C; 1454 G; 1725 T; 3 other;
     actggcgacg aggataaagg taggaatttg attcattttt gaaatgataa atgccaccag        60
     attgtagttt ggctcacaca tttttttgcc ggatgatgtg ctttcggatt taatccgtgt       120
     cgttcacgtt atttatatgt atttgagcaa ttattagtaa aattgtaata aaattgatgc       180
     attggagtgt tatgttcttg aaaatgctga atgttgaatg tttcacagag tcatattttt       240
     tttccatttt gaccgaagaa aacgaaaaag ctgcccgttg ttactatagc aacgacagcc       300
     acgctggact ccgaggttta cttgtgaaaa aaaaagctca ctgacgaatc agatgacaac       360
     ggtaatcgag taacagtatc tatagcaacg tcattgacat gcttttgtgt atgttcgtat       420
     tattggttac tgcaaaagtg ttggtgatgg catctttcga tatgatcatt gatgattgag       480
     aatgagtttt cagcagggaa cacgttggca gaaacgagat agcaataaaa agtgaatggt       540
     tgttatggcc gattgatttg ctacagcggg agtaactgtc aataaaaaaa aaaaaaagaa       600
     aaaaaagaac ggtagttgat atttgagctg tgtagtgaaa atagagaaga gttaacatta       660
     catttattgc ctaaacagct gatttgtgtg cttgtaagtt tgagttgttg aattattgaa       720
     atggcaaaag aagcagttgt tgtcgtaggt gtatagagtt attgatcaaa tggattgaaa       780
     caggtatgtg attagatttt cgatgcagta aattctacga tttgtttatc tacaagattc       840
     caattggaaa tcataatttg cggattcttc ctgtacattt tggtttgcag agaagggtat       900
     tatgtttgaa aaacaaaagt gtgttgatta gggcaaactg tttaatttta ccctcagtgt       960
     taaacaaaaa ataaagaaat gttttggttg ttactgtttt cattcaaatt tgaatggatt      1020
     ttctttacgt ttgcctgtat tgcttgaatt tccaaattga cggaatttct agctacgctc      1080
     tggtacagag agtcggttat gcatgaacga actttcaatg ctgcaactgt gaagtgttga      1140
     aaattattag atatcatttt ctgtcgattc acaaaagcag aaaattgtcc aaattaatca      1200
     tgagcatttg agttatttgg aaatgaacca gaagcgttcc aagggtggtg gaaaagaacc      1260
     aggagcgttc aaaggatgtc gatttgaaac cagaagcgtt tctcaaagag ttatatagga      1320
     accagaagcg ttcgggatat atttggattg aatcattgga gttacgacta aaccaggagc      1380
     gttaagtcta aagaaaaaaa tgtaaattgg agtattgtat tggaaatgat tatggttatt      1440
     ttgaaccagg tgcgttataa agtttgtggt aaaaaaaata cagtgaaacc tccatgagtc      1500
     gatatattta aaatttgtga actgaatgag tatatggtaa catgttgagg catattgatt      1560
     gagaaccaga agcgttctga atatattgaa ttaagaatct gcgtgcctat ggatttacat      1620
     acaggtattg agcgttgaag tttgaatcga aaaagtatga cataaagtat tctattggag      1680
     aaaatagtta aatggagaaa tatgaataca atactaaata aaaaaaataa aaatcaaatc      1740
     tggagtttta ttttattata tatatattta tattgtatat gttatgtgtt taaagtatat      1800
     aagacaataa aatatatttg ttaatgagat atttctggaa catgtaaacc tcgagtcaag      1860
     ctaaaatgaa ttaaactaaa acagttagtt tttgtaaact aacaatgtta tgtactattt      1920
     gttatgcaca ttatttgtgg tatgcacaag agccatcatc cggtattttc aaacgaccaa      1980
     taaaataaaa atacggagtt cgtattgtat ttgatatact aaaataatgt tacagatgga      2040
     ggaacctcgc caaattgcat cgtttcgttg tgatataatc gaaaagggga aactctcgag      2100
     agaatgggaa acctggaagt ggtcccttga atgttatttc gaggcattcg atataaccga      2160
     ccagaagaag aagcgcgcaa aattattgca tttgggtggt gtagaattgc aacgagtttt      2220
     ccgcagttta ccagatcatg ctaaaacgcc gttggttact ctgaacccaa aggtgtacga      2280
     tttggccatt gagctacttg attctttttt ccaagctggt aggcagaatg tgatagagcg      2340
     tcggaagctt cgtaagctga aacaagaggt caacgaaaaa ttttctcatt acattgttcg      2400
     acttcgtcaa caaagtttga attgtggttt cgaaaaatat tcagcagatg tatgcgagat      2460
     actgaaggaa atatacttaa tcgatgttgt cgttgagaat tgtcgatcgg atgagttacg      2520
     taaggccatc ctgaagcgtg atcgttcctt gaaggaaatc gaggaaattg cggccactat      2580
     cgaagacacc gaccaacaaa tgagagagct aaaagaagtc aacaatccga tgagagaatc      2640
     gtcggtatac gaagttgtaa gaagagagaa accatcatca gcgactgcta aattcgatgg      2700
     agagagaaat caaacatcaa ccgtgtctaa ccgacgagtt gcccagcagt ttccaacgag      2760
     aaataccaaa acatcgtgtt tctcgtgtgg gcaaacggga catttctcca attctcgtga      2820
     atgtcctgct cgaggtcgtc catgtcgtcg atgtcaacag ctgggccatt acgaggttgt      2880
     ctgcagaaaa cgcaaggcca gttttccaaa atcaaggatt ccggagaagg tttgtacagt      2940
     cgaaaaattg tccgagtcaa tcaagatgtc agatgaagga gattcaacga acgacgaaaa      3000
     agtttactat gctttttacg gagggaatga gaccaatgtt ttggatgcag ctgtaggcgg      3060
     tgttcaaatc aaggttttga tcgattcagg tgcagatgcg aatttgataa gagcagaaac      3120
     atgggaaatg atgaagacgc aaaatgtgaa ggttttgaaa tctactaggg gatcatcacg      3180
     cattttgaaa ggatacggca gcgataaacc tcttgatgtc atcggaacat ttgaagcaga      3240
     agtcagtatc ggacgtagat caatagtagc ggagtttttc gtagtgaagg gtggacagaa      3300
     ggatattata ggagatctta cggctaagaa tttaggcgta ctgaaggtgg gattagatgc      3360
     aaacaacgtc agcatggagc agaagccatt cgcaaaaatc agtggagctg aggcgactat      3420
     cgaaatggat ccagatgtca agccggtgtt tcaacctttg cgcagagtgc cgattccatc      3480
     gtgacattat cgaggttaag aaagggccag ctacctgggt gtctccgtta gtagtagtcg      3540
     gaaaagtgtc aggagaaccg aggatttgtt tggatttacg gcgagtgaac caagcagtac      3600
     tgcgagaaca ttttccgatg cctatggttg aggaatacct tgcgcgtctw ggaaaaggga      3660
     aaatctggag taagctggac atacgcgagg cattccatca ggtcgagtta aacgaagaat      3720
     cgagagatgt gacgacgttt atcaccaacc gtggtttgtt caggttcaag cgtcwaccgt      3780
     ttggcctagt gactgcaccg gagatttttc agcgtgtcat ggaagagatg ctgtcaggat      3840
     gcgagggaac ctgttggtat cttgacgatg ttatcgttga aggagaaacc agtgaaattc      3900
     atgacagaaa tttgaagaag gtagaactct gaaatttatg ataatgtttc gatgtaataa      3960
     aatatggatt acgtaaattt aattttaggt tcttaatagg ttcaaasaaa gaggcgtaga      4020
     actaaattgg gataaatgtg cttttggggt ttccaagctt gattttttgg gacaccacat      4080
     ttctgaagac ggaataagtc catcacaaac taagctgaat gcagtttcgt cattcagatc      4140
     tcccacttgt gaatcagaag tacggagttt cttaggtcta gccaattatt tgaacaaatt      4200
     cattccggat ctcgcgacga ttgccgaacc tcttcgaaat ctcacaaaga aagaaacaac      4260
     attcaaatgg actcatgtgc acgagactgc atttcaaatt attaaagcaa agatagcttc      4320
     cgcatcaaca ttgggatttt tcaacgtaaa cgacaacaca atagtggtag cagatgcaag      4380
     tccgtcagga ttaggagcag ttttgcttca ggaaaataca aacggagatc gtagagtcat      4440
     ttgttttgcg tctaagtcat taacagacac ggaacgaaga tattgccaaa ctgaaaagga      4500
     agctttggca ttagtatgga gtgttgagcg gtttcaaatg tatttgtatg gtaaaccatt      4560
     cactatcatg actgactgta aggttttgga gtacttgttt acccctcgta tcgaaggcgt      4620
     gtgcaagaat tgagcggtgg gtactacgtc tacaggcgtt tgattaccat gttgtgcata      4680
     ttcctggtaa tcagaacatt gctgattgtc tttctcgtct ggcaacggta aaaccgagtg      4740
     catttgatcc tgacgaagaa atcgcaattc gagaaatagc catgcaagct ggatctactt      4800
     ttgctctaaa atggagtgaa atcaaggaag aatctcagaa ggattctgaa atttccgaag      4860
     ttgtattact gctggcaaat gcaaattctg aggaattgcc tctatcatat cgcgtgatag      4920
     caaatgaact gtgttcaatt gatgcggttt tactaagagt cgatcgaatt gttattccac      4980
     gttcactgcg aagcagagtc cttgagattg ctcatgaagg acatccagga ataaatatga      5040
     tgaaaagtca tttgagaact aatgtgtggt ggcctaggat ggatcaagac gttgagaaat      5100
     ttgtgaaaaa ctgcagaggc tgtacattgg tatcagcacc aaatccacct gaaccattgg      5160
     ttcgacgtga gcttccaaat caaccatgga cagatttggc tgccgatttc ctgggaccat      5220
     tgccggaggg tcaacatttg ttagtgatag ttgattatta tagtcgatat atggaagtct      5280
     gcgaaatgaa agaaataaca gctgcagaca caacaaagga gttggccatt gtatttagtc      5340
     gttttggact cccaagaaca ttgcgcgtcg acaatggacc acagttcagc gaaaaatgtg      5400
     atgaattcaa tgaattttgt gaaagcaatg gcatcaagat aatcaacact attccatatt      5460
     ggccggcaat gaatggtgaa gttgagcgcc aaaatagatc cattttgaaa aggttgagaa      5520
     tagcacaaga cttgggaaag gattggagat tggaactacg aaaatatttg ctaacatacc      5580
     attcaaccaa ccacagcgtc acgggaaaat caccagcaga acttatgttt ggaagaaaga      5640
     tccggaataa gctacctggg gtaccatttg aagaaataat ggacgaagaa gttatggagc      5700
     gagatgcaat gcacaaggaa aaacagaagg tctatactga cgctaaaaga tctgctacaa      5760
     aaaaaaagtc aaattaccat cggagaccga gtagtggtga aaagaatgaa gaaagcgcat      5820
     aaattgcagt ctgattattc accagaagaa ttcaaagtca tacgtaaagt tggaggagat      5880
     acaacgattc gttcatgtga ttcaggaaag gaatataggc aaaacgtggc gcacttgaaa      5940
     aagattgcga ctgcagcagc atcagatgaa gaatatgaga aacagagtca tgaagcagag      6000
     gttatgcaag agaagaattg tggaagtgaa acgtgtttag aagaatctgt agatgtcaga      6060
     agaaatatgg aaattgagag gaaagaaaga caggtagaat ctaaggagaa tcaaaaacgc      6120
     acaaagcgag tgacagctga accgaagaga taccgagact atattgctca ttaaaatcat      6180
     taaagtaagg gaggat                                                      6196
//
ID   Gypsy-532_AA-LTR repbase;    DNA;    INV; 214 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-532_;
KW   Gypsy-532_AA-I; Gypsy-532_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3156-3156 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 214 BP; 66 A; 28 C; 56 G; 64 T; 0 other;
     tgtaggatac gagcagatgc gtaattaggc gagtatgatc gaagtaggcg atgattgagt        60
     agagttagtt agtgacggtg agtgatagct aaaggacaag caatcaggtt gttcctaaga       120
     tttacgaaat aaatcggagt gaaattgtaa aacgctgtgt tacgttattc tgtgattggt       180
     atccttttga atcctgaata tcctgaactc taca                                   214
//
ID   Gypsy-533_AA-I repbase;    DNA;    INV; 7604 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-533_;
KW   Gypsy-533_AA-I; Gypsy-533_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7604
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7604
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3119-3119 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 7604 BP; 2212 A; 1577 C; 1835 G; 1971 T; 9 other;
     tttggcgccc aacagaattg gcaaaacaca actcattttg gtagcggttt tttttttgtc        60
     tgagcaaaat ttctatgaca tttcattttt ttctctgtac aatttttagg ttaaattagc       120
     aataaattct cattgaattc gaattaattt tatttttttt tttttgtaat cgtatagtgc       180
     tgaagcagca ttcctcaatt ttgtttaact ttgattttaa atttccactc acagtcaaaa       240
     taaaaagttc taaaatggac aaatttccgt acgccgaaca tttgatttta gaagaagtcg       300
     actatgagct tctcataaga ggcgtcttag atgataaagt tgcagctctt gatctggcag       360
     ctaaacaaag gtatctgcgg actttgttta aagcagatgt aaaaaatttg aaaaattatt       420
     cctctccgta tagcgtttcg gacgaatatg accatatcga tggtagaata acggatctgg       480
     aacacgcgtt tcagcgctat ggtgtggaac aacggtacat ttctcggttg ttgcattact       540
     attaccgtgc aaaaaggtgt ttggctgatc aagaggatga aacgcaactt aagcgaaagc       600
     ttgttcgtcg catcgaagaa tgtatgcaag agtacaaagt agggccccca gcgtttcagt       660
     acgtagagca aatcagcgac atgcttaacg aggcagctaa aagtagttcc ggtcataccg       720
     aacagcgact acagaacagc agcaccccta aggcaaccgg tgccagaccg aaggcaccgg       780
     agatgactct agacgacccg attccgaaca gcgcagcaaa gtcgagtggg caagaggatg       840
     agatgcacga acgtatgaac cacttggaga ggatgctcga aagtgtgacg aaaatgttga       900
     cggagcgaga gccaccgatg acgcggacga atgcgacatt gccgccgaga gaggcaacaa       960
     cgcgaccacc gaaagtggta agcgccacag cgacaccaca acaaacgatt ccaaccagcc      1020
     cagcagaaga cgagcttttt gatttgctga aaaacgtcag tagattattg agcgaacggc      1080
     aggcacaggt aatgcaacag aggagagaac cggaagcaga gcgtgtgacg attcggccta      1140
     ggctttccgg attgtttgct cctgtagaac cggaggaaac ggacgaagag agcgtaagag      1200
     gtatgaggcc tagcagccgg cattacgaaa cggctcgagg tcagcagagg accaggagaa      1260
     atctaagagc gcgagacgag caggacgatt cggaggtttc agacggaagt agctttacct      1320
     cacgcaggaa tgaaggtttt tggaggcgag atcgaggacg tgaccagggt atgagagacc      1380
     acctgaaccg agtggagaaa tggaaactca gattcagcgg tgactcgagg tccgttagcg      1440
     tagagaactt cctctataaa ctgaacaaaa tcgcggagtt ggagggagtt ccggagcgac      1500
     agctgctgag ggacatccat cttcttttag aaggccccgc atctgactgg ttcttcacct      1560
     ttgtggacga gttcgaggat tggtcgacat tcgagaggct catcaagttc cgattcggga      1620
     accctaatca ggatcaggga atccgccaga gaatccagga aaggaaacag caacgaggag      1680
     agtcattcat agcattcgtc accgagatcg agaagcttaa tcgaatgctc tctaagccgt      1740
     tgtcgaagac gaggaaattc gaagtcatct gggacaacat gaggcagcac taccggtcga      1800
     agatatccat tgttgacgtg aatgacttac agcaattggt caagctgaac catcggatcg      1860
     atgcagcaga tccaggcctg caccagaccg gtgaaccacg gcgtatggtt cacaacgtag      1920
     aggttgagga tggatcggac tacaacagcg atgagtcaac aacgataaac gcaatgcgac      1980
     cgcgtccaac cagagagagc aggcaaccaa cccagagtgt accgaagcta ctgcagaaca      2040
     acaaccccgg acaatcggtg tccaatactg tggcccaacc tccacaacga gcttgctgga      2100
     attgccagca gaacggtcat ggatggaggg actgtccgag acccaaggta atattctgct      2160
     acggctgtgg aaatcttggg aggacgatcc gttgttgcga acggtgttca ggaacatcga      2220
     accagggaaa ctaagttcga gaagtggaga agggaatcga accgcttctc aaatcaaaga      2280
     ggttcccaat ccgaacgaga ctaattttga ccctatgaaa caaatccacc acattcgtgt      2340
     gagtgtgacg aaatgtcctc acattagagt gcaggtttac gagacagaga ttgaggcact      2400
     tttagattcc ggtgccggca tcagtgtcat caactcttca agtttggcag aacagtacgg      2460
     cttgaaagtt caaccggcag ccgtacgtgt tagtacagcg gacgggacgg agtaccgatg      2520
     tttggggtac ctgaacatac cgttcacgta caaaggaatg actaaggttg ttcctacgat      2580
     aatcgttccc caaatctcca gatcgctgat tctcggagct gatttttggg agagtttcgg      2640
     aatccaaccg atgattgacg tagggaacgg gccagagagg atcgaaaccc tcaacgaggt      2700
     agcaggaccg tacctctgct ttaatataga gccatccggt gaactgccaa aagtggagga      2760
     gaaagtaccg gatgaaaccc tggacttgcc gacttttgag gtgccagcag agccggtacc      2820
     agagaacatc gagacagaac atgaattgac gaagagagaa agaacgaggc tgattgaaac      2880
     catcaaaaag ttcgagttca cagcaccagg taagctggga cgaaccgacc aaatccagca      2940
     cgagatcgta ctcaaggacg atgcgaggcc aaggaatcag ccgatctata agtgttctcc      3000
     tttcatacag aaggagatag acgcggaaat tgaacggttc aaggagcttg gcgtgattga      3060
     agaatgctac agcgagtgga ctaatccgct ggtcccggtg agaaagtcaa acgggaagat      3120
     tcgggtttgc cttgactccc gtaggatcaa tgcgatgacc gttaaggacg cgtatccgat      3180
     gcagaacatg caggacatct ttcacaggct gggccgcgca aaatattact ccattataga      3240
     tttgaaggat gcctatttcc aaatcccttt aaaggaggaa agccggaatt acactgcatt      3300
     ccgaacgtcg aaagggctgt tccggttcaa ggtgtgtccg tttggcctga ccaacgcacc      3360
     cttcactatg tgtcgcttga tgaacaaggt cattggcttt gatcttcagc ccttcgtttt      3420
     tgtttattta gacgacatcg tgatcgccac ggaaactctg gaggaacatc ttcgactcct      3480
     agagatagtg gcagaacgat tgaggagggc aaagctaacc atttcgctag aaaaatctag      3540
     gttctgtagg aaacaggtga tgtatttagg atacctgctg acagagcgtg gcgtgtccat      3600
     cgatcgttcc aggattcagc cgattctgga ctacgctcgg cccaaatcag tcaaggacat      3660
     ccggaggtta atgggcctag ctggatttta ccagaaattt atccggaatt acagcagagt      3720
     gactgcgcct atcacggatc ttttgaggaa agacaagaag aaattcacct ggtcggaaga      3780
     agcggaagca gcgttcaatg agttgaaatc tgtcttgata tccgctccga ttctggcaaa      3840
     tccggatttc tccaagccat ttgccatcga gtctgatgct tcagagaatg cggtaggagc      3900
     tgcgttagtc caggagcagg aaggacagac gagagtaatc ggatatttca gcaagaagct      3960
     cagttgcacc cagcggaagt actcggcagt agagaaagag tgtctcggag tcctactggc      4020
     catagacaac ttcaggcact acgtggaagg cactcgattc aaggtggtga cggatgcgag      4080
     aagtctgctg tggctcttca aaatcggagc agaatcgggg aattcgaaac tcctccggtg      4140
     ggcccttcga atccaatcct acgacatcga actcgagtac cgcaaaggga agaataacat      4200
     taccgccgac tgcttatcca gatcaatcga aacgattatg gtgatccagc cggatccaga      4260
     ctacgaggag ctagcagcgg atatagtagc gaatccggtg aaatacgggg aataccgggt      4320
     aatagacgga agaatatgga agtacgtgaa gggtacgaac cgtcaaaacg acccacgctt      4380
     ttcgtggaag aaatttcctt cagaaaaaga gagggacacg attattcgag aagtgcacga      4440
     cagagcccat ttcgggttcg agaaaacctt atccgccatt aaagaacggt acgtttggcc      4500
     gaagatgaac caacaaatcc gcaagttctg caaagaatgt ttgagttgcc aaacaagcaa      4560
     agcagggaac aagaatgtga caccgccaat ggggtcacag aagccggtgg agtacccgtg      4620
     gcaattcgtc acactggact acattgggcc tttaccagca tctggcaaaa atcgttgcac      4680
     ctgtttgcta gttgctactg acgttttcag caaatttgtg ctcgtgcaac cttttcgaga      4740
     ggctaaggca gaaccgttag cagaatttgt ggaaaatatg attttccggc tgtttggtgt      4800
     tccggagata attcttacgg acaatgggac acagtttgtg tccaaggtgt tcaaaaacct      4860
     cttaaaggcg tatggcgtca accattggct aactcccgct tatcatcccc aagtcaacaa      4920
     cactgagcgt gtcaacaggg tgataacgac ggcaataaga gcgaccttga aaaaggatca      4980
     taaacattgg gcagaaggaa tccaggaaat cgctagtgcg atccggactg ccgtccatga      5040
     ttccacaaaa tacagcccct actttgttgt gttcgggagg aatcaggtgt cagacggacg      5100
     agagtatgct caaatacgag acaactacaa accgagcgag acgaatgaga cggaggaagc      5160
     ggaagaaagg aagaagctgt tcgaagaggt gaaagcaaac ctctcagccg cctacaaaaa      5220
     gcatgagaag acctacaatc tgcgctctaa cgtaagctgt cctaaatatg ttgctgggga      5280
     acgggtattg aaaaagacct ttgacctctc ggacaaaggg aaagggtttt gtaaaaaact      5340
     tgctcctaag ttcgagcctt gtgtagtaag gaaggttctt ggatcccaca cctatgagct      5400
     ggaggacaac tcaggcaaaa ggattggtgt tttctttgcg gatcagttga aaaagctgaa      5460
     cgcagcctcg tctcatctaa actaaaaaca gtagatcaag ctatgtgcct ctttaagagc      5520
     aactaccgat tacgatgagt acgaatcgaa aataaaacac caaaagggca aaattttact      5580
     tcgatcatgt cgaaccacga cgaggaaatc ggagaggtgt caaaaccaaa ccgaaagtac      5640
     tttgagtgat gtccaaatca cgacaaattt tcgaaatttt aatcaaaagc tatgaaaaat      5700
     ctcatatgag tgacaacgag aaacaaattt cccctaaaaa gaccaactac gggtagaaaa      5760
     ttcgtcttta gcgactgaca agacgagaaa caatacgttt caatgtaaat attcttgtaw      5820
     atagtagatt agtatakttt gttagtgatt gaagtcctac gcttcgtcct acattaaatc      5880
     tagagttagt acttaggcta gattagtatt agatawttga aataactcac gatttttctt      5940
     gaatttttac cattttcgtt tcgaatttat tccatagttg tagttggcac tcgtaagtac      6000
     gtccatcatt gaatttgttg aatttttacc taaaagtcga aatcaagcat tagtttttga      6060
     gaaatttatg gtaaaatatg ttaattagaa cttttattta ccttttwtat agttggcagt      6120
     ttccaacgtt gcactctttt tccgatttgw tccgccgtcc aaacagtcct ccagtctcta      6180
     ttctcccttt ccatcccatc cctctaggtg agtttatcct ttccggttag ttcatccacc      6240
     tccataatcg aaattagtcc tttgaatcgt tatcmtccat caattccttt tccgtagtaa      6300
     atcctcctta tcgattctcc agtttgtttc cactctcctt tgccgataca tctatgtccc      6360
     gtctattttt aggcactcca ccgagtcctt ctttatcgat cgtgtgtttt gggttkgtcc      6420
     cggtcgattc attgctcttc ccccagcaac gaacacctcc gtcgagagct ggtgtggckw      6480
     acctgcgaac gaaagaaaca caaaaattac tctttatact tacatcttcg atggaacgac      6540
     gatgatataa ctctccttcc atgtttcatc tgcacagcta cacacatttt cttcaaattt      6600
     cgcaccgatt ttcactactt ttcacgataa cttttcacac cgagaccgtt ttccacgtta      6660
     attttttcac cgatccgtca aactttgttt tggttcatcg gcagtgttgg cagaatgcgt      6720
     gaaatgaatg aatgtgatga atgtttgggt gaatgtatgt tgcgcgcgag gggtgcatag      6780
     atggtaaatt atgtgttttt gtctttttcg ggttattttc atagtcggtc gaattctgac      6840
     ggttagaaag ttcccagttt atgttttgag tttcaatttt atggtcaacg ctttctggga      6900
     aaagttctgg gtagttgatc gtaagttgaa acagaccccc catttaaggt gagtttttgt      6960
     gaatccgttc gttctcgggt agagacctgg ggtaaggatt gcattaaaat tcaccagtta      7020
     gataacgttt ttcactgagg tgatagtttt tcgggagaaa tcacaccgtg ttcttagttg      7080
     ttaaactgag gttggtgttg aattctcgtt tttagttttt tttgtttgtg atgtaagatt      7140
     tttgagattt tctcgttgat gtggattatt aaatgtttta gcttatttta taaatgtatg      7200
     attgtgttgc caacagcctg atgcgtagtt tcagtttaat tgtttgatca agatagttgt      7260
     ttctttatat tttgagagtt gcttttgtat atatatttgt ttttaatttc cttgtaaata      7320
     ttaaaattag aaattagttt aaggttttga tttgcttttg aatttatttg gagatttctg      7380
     ctggagaccg gagttgtaaa acgttgatgg tcagtggcag gcatgataat tctttcatga      7440
     cttgtaaata gaggttgagt caaatttctg acgatgaaca catatgaccc cggaggtcct      7500
     aagtaactac agaagcagta tcaaatgacc ttcgaaaatt tgattggttt ttgaaccttt      7560
     ttattcaact ccaatcaaat tttcgaaaat ttagtgagga atga                       7604
//
ID   Gypsy-533_AA-LTR repbase;    DNA;    INV; 2177 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 25.10, Created)
DT   01-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-533_;
KW   Gypsy-533_AA-I; Gypsy-533_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2177
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2177
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3157-3157 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 2177 BP; 553 A; 493 C; 546 G; 585 T; 0 other;
     tgtggcggta ccacgaataa ttgaatttaa aatgaatatt agtttaagtt gtacagaata        60
     atttccgtat gttgaattat accattgaat taccccctgt atatagacca ctcactttga       120
     gtgaaatact gaattcgagt tcatttgttc atttgctcca ctccgcatac catttgtaga       180
     atgagttccc tgttcgattc tggctctgag cgtaaatcga cagccaagcg atcctgttgc       240
     agaagaccgt gatctcggtt cgaggctcgg gcatcgacct gggttcaagt ttcgttgacc       300
     ccttaagtct tttataaaac ttcgggtggg cagcgagttg gatgatcgtg cccacttagg       360
     gaaattgaat gctttctccc gacgggtaga gaaagtagta tgcgtgaagg cgatttttga       420
     ccttcgcgaa attctacttc gtagatttcg cgtaatttcc ggcgacgaag atttgcaaat       480
     ctcgcgccta ttctgaggat ccttgaactt gactctttca cttcgttctg gtctgcggaa       540
     gaggcgagag cggtccaagt ttagtttaac cgcgccgtgg tgtgatagtt caggtgaact       600
     aaaagtgaac gtgaaaagcc tttgaatttt actaatttag atttcttcca tatccctcaa       660
     gtagcttaga aaggcaaagt caagtgcgtt agtagcgatt tgtgcgagtt ggcggtttta       720
     gtgcgagtag ttgatgcgac aggtaatttt ggtgcttaat agtgtgctta gggggcaatt       780
     gctaaaactc actcgtcgtg tgaccgtatt cttaatacag atttgtggca agttgcaagg       840
     tccgtcacac cacaccccca agttagcgac cgttttcgac cccgctttcc agcttcggag       900
     ttttcccggc ggtacacgtg ggccggagag ggcaagcgta ccatcaaccc gcgcccttgg       960
     cagggcagca acaacgagcg agtcggtttc agaccgatag tcagcaaccc agcatatttc      1020
     cgtgagaaca accagcaaag ttccgtcgag cgtcccgaac cggtttcgaa ccggtaaccc      1080
     ccgcgtgaga gtcacgcacg ctaccaactg agccatcgtt ggtgacgacc accgatgtga      1140
     cggctgtacc ccgtcgagca agtccacgaa tcccgtgtga ggcgccgttg ggaacggcaa      1200
     cctgatgagc gagtagaaga agcgaagtcc ggaggagatc cgcgtgtcgg ccacgtgagg      1260
     tgccgcagca acagaagcaa ccgccgatgc ctccacgcaa gtaaccgttc aaaccgtgag      1320
     tactcatttt tctatcccat gcgcatggtg aatttcgccc ctagcccgag ttaaaccgct      1380
     agcgtggcca caccgttcat ttcggcccta ccgttcgttc cgtttatgcg tcggtagtcg      1440
     gcaacataaa ttgaatcccc gatgaacacc acccgtcgca ccgcacacaa atgaattaac      1500
     cgcacagacg agagaaagag aatagctaga gtaaagaggg aatgcagtag tagaataggc      1560
     ctagagttta agattgtaaa tatgaagaga aactgaattg tcgataaagt agaagtaaga      1620
     aatgaattta atatagcatg aaacgacagg gaggaagttt gaatttgaag aggcggtgtt      1680
     ttaataaatg agtacactat agtccaaaag tgtttgaata gctttttctt gggagaagtc      1740
     tagaaaggta aatgtagagg gattttcacg tttcgggtag ttttgtgttt ggtcattttt      1800
     tttggatatt ttactggaga ggttgactcc gaattcaacc aagggacagc tctttaatcg      1860
     aacgaagatt cgttcgaggt gtttgagtct tgttttcccg tgatgataac catcgcgagc      1920
     actactttgt cgtcggcgaa aatcaccttt acgcactcta gtttctttat ttgcacgact      1980
     tcggtcgtga agcatttcgt ttccctgatc agccagcttg tttcccgccc attcatttgg      2040
     gaaaaaccag aaccctcccc tgaagggtct cagttcggtc gggcaacctt tcaatctcgg      2100
     taagtggtct ccctcgggag tggcgcgtaa gccattttta cttgttcccg ggaaactcgc      2160
     aaggctgtcg ggttaca                                                     2177
//
ID   Gypsy-534_AA-I repbase;    DNA;    INV; 6971 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-534_;
KW   Gypsy-534_AA-I; Gypsy-534_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6971
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6971
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3120-3120 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 6971 BP; 2068 A; 1481 C; 1444 G; 1978 T; 0 other;
     tttggcgccc aacgtggggc cctgaagatt tgggcaattt gtttgatttg ttgaattttg        60
     gttgaatttc agtccattaa gaattggtta aattagtttg ttaagttttg tattggattt       120
     ggtttagttt taagtaaaat ttgaattttc ctttcggttt atacattgaa ttcgttagct       180
     taagattttg gttgagatct gtgctgttat ttctatacaa ataagtttat ttttcctgtt       240
     tttttttctt ttctctctca aagtgactat tattattgaa gttttatata taactgagtt       300
     tccattgaat ttgttattta tcgaccacca tggacgataa tattcttcag aatacgacct       360
     ctaattccca aagaactttg gtgtcacctc cagtttggga atctgatgtt tcaagggtgg       420
     aaatagccgg aaatcaagtt gaaactggcc agtatcgcgg gcatcgcctt gcatgggccg       480
     atcagatggt tcaaaaccat tcaatggata gtcgactgcc tgcaccaaac aatttgcaag       540
     cagaaatgga acgtgctacg agaactaacg tgtccgcaaa tggatttcag cttccctttc       600
     gtgcggctcc tcctaccact tcgcaaaata cttcctccgg tagtgcttgg ttacgggtac       660
     cgttgaataa ttcccaattt tccgaacctg tggcaagcgc gactcgttac agtaccgcta       720
     atccttcgac tgatgaacaa ttttcctctg gtttgccgac cgtggctact accaatgcga       780
     gtctgcttcc agatacgtcc gtagacagcg atctgagacc aattttgaac tcgaccattc       840
     agccaaatct gtcgaatgca acatggccac caccaccgat tgatgcaatg gggaactcaa       900
     ctggtatgac gactgaaact caagaccggt cgtcccaaat tttgaatcct tttccgtcag       960
     aacctgttgc taccgcccat tcgattcctt ctggccgacc ttatcagtca taccatccag      1020
     aaaatcagtc agcatttcaa cctgaaaatg atacacagtt ttctcaaaac tttgtacatg      1080
     tttctgaaat caaaaattat gtcgagactt acgttcgtca gctgctgatt aattccccag      1140
     tccgtcccat cgatcaagat gtcgttgtca accgtcttgc tcagcaaatg ggagaaatag      1200
     acattcagaa cgtggacatt tcgcagattc cacttccgcc gtcgacatcc caagtgcgac      1260
     caaggctttc tgcgccgtta cagatgcaag ctactgaacg atctgaaaat gtggtggggt      1320
     atagagaaga atcgagaaat gaaaatacac cattggcttt cagacaagtt ttgcggaact      1380
     cctttccgag ctttcagaac ccagtgtacc ctggtaggcc aacggctttc cacgaacaag      1440
     gacagcggca tgaacccacc gttcgcgcaa attatccatt aaacccttct cctaatcctt      1500
     cgttgcgtgg aaatgctgct acaaatcaga tacctcgggg aaggttgcct catcaaactt      1560
     gcaacattct agaaaaatgg ccaaagttcg ctggtgatgc cagcccaatc ccggttatag      1620
     attttttgag gcaaattgac cttttgtgtc gttcatatca gataacgaaa gaggagttgc      1680
     gaacacatgc tcacctttta tttaaggagg atgcttatgt ttggtatacc gcctacgaac      1740
     caaaatttga ctgttgggat actttattgt tttaccttcg tatgcgttac gacaatccca      1800
     atcgagatcg gttcataaag gaagaactgc gtaataggaa gcaacgcccc aatgagctct      1860
     ttagtgcatt cctcacagat gttgaaacac tctgtcaaag attaatgaaa aaacttccag      1920
     atgatgagaa attcgacatt gtcatagaaa atatgaaaat gtcatacaaa cgccgtttgg      1980
     ctcttgaaag aattgagtca ctggaacatt tagcacaact ttgctataaa tttgacgctt      2040
     tggaaggaaa tctttaccat cctcggggtt caaatagacc tccaatagtc aatgagattg      2100
     attatgagga acctgatatt gcaggtcatg catcggaacc tgaagagtgg gaaatcgcgg      2160
     ctcttcaagc acgtcgaggg caaactgatc gtttgaaaga tcaacctatt cgcaaaactg      2220
     aggaaagcga tcgttcctac cctctgtgtt ggaattgccg aaaagttgga catttatggc      2280
     gggaatgtga caaaaagaaa gttattttct gtcacatgtg tggacatcct gaaaccacgg      2340
     catttcgttg tccacaacag catgacgtca gacaatcctt cgaacccaag tcaaaaaacg      2400
     aatagacaag gagtttatcg ggaaccgatc tccttcaact cctaccaaca tggttcccct      2460
     gaatgctttt acccaattca accagaccta cttgatccag acttgtttca ggcgctgccc      2520
     tcatcttacc gtatcaatac tagatattga agttgaagga ttggcagaca ctggggcaag      2580
     tgtgtcgatt attagctcaa catctttgat tgatcgccta ggtttaaaaa tactaaattg      2640
     caatatgaac attttaacgg ctgaccgtac gtcatacaca tgcctaggtt acgtcaatgt      2700
     tccttatcga taccagaata aaaccaaaat tgttccgaca ttggttgtgc cggagatttc      2760
     aaaggtttta atcctaggaa ttgatttctt gagagctttc gattttcatc ttgtatgcaa      2820
     cccggaccaa aacccttccc ataattcggt tgtcgaagca ttggagccaa tttcttcact      2880
     caattatgtt cagaattatt ttggcgatga cgaggatcaa gtatgcttcc aaatgacacc      2940
     gtctgtcgaa cctggttcat ccaaagaggt tccggaggtg gatgaaagtc tagagatgcc      3000
     taccgtcgaa attcctacaa aaatcattga gcaacctgac gatattgaaa cggggcataa      3060
     gttaacggca gaacagcaag ctaaattgtt ccttgctatt cagtatctac cgatgactaa      3120
     ggagggaaat ttagggcgaa ctcatttact caaacatgca attgaattgc ttcctggagc      3180
     aacgcctaaa cgagttcctt cttaccgatg gtcacctgcc gtagaaaagg taattgatga      3240
     agagatggat cgattattgc gtctagatgt gatcgaggaa tgtgaaagtt cagcagactt      3300
     catcaaccct ttgctgccca taaaaaaacc taccgggaaa tggcgaatct gtttggattc      3360
     acgtcggttg aattcattaa caaaaaagga cgattttccc atacccaata tgtccgttat      3420
     tttgcagagg attaagcgtg ctcgatattt ctctgttata gatttgaccg agtcatatta      3480
     ccaggtagaa ctggaaggtg aagcgaagaa taaaacggcc tttagaacca ataaaggttt      3540
     atatcggttc aaagtcatgc ctttcgggct gaccaatgcg cctgccacca tggctcgctt      3600
     gatggtaaaa gttctagggc atgatttgga accattcgtt cacgtttatt tggacgatat      3660
     catcataacg tcagaaacac tggaagaaca ccttcgcttg attcgactgg taggagaacg      3720
     attgagcaaa gcaggattaa caataaatat tttgaaatct aagttctgtc agactagcat      3780
     tcggtatctt gggtatgtat tatccgaaga gggcctgtca atggacgtgg ccaaaatcca      3840
     gccaatttta gattatccgg cgcctcgtac agttaaggaa gttagacgct tacttggtct      3900
     tgccggattt tatcaaaaat tcatccaaaa ctattccgac atcacagtgc ccatcacaga      3960
     cctactgaaa aaggggcgta ataagttcgt atggaccgtt gaagcggaag aggcgcttaa      4020
     aaaacttaaa gaagctttag tttcggcccc catactagcc aatcccgatt tttcccaaac      4080
     tttcataatt gaaaccgaca gctcggatca ggcaatcgga tcagtgctag tccagataca      4140
     gaatggagtg cgaaaatgta tagcatatta ttcgaaaaaa ctgtcgagca ctcagcgaaa      4200
     gtatagtgct actgaacgag aatgcctcgc tgtcttgctc agtatcgaga actttcgcca      4260
     ctttgtcgaa gggcatagat tcatagttca gaccgatgca atgagtctga cctttttgca      4320
     gacaatgagc atcgaatcaa aaagcccgcg tattgctcgt tgggccctaa agttgtccaa      4380
     atatgatgtt gtcttgcaat acaaaaaagg atctgaaaat atacctgcag acgctttaag      4440
     tcgtagcgtg tatacgatag actcaaaact ggcagatccg tatgtcgaag gcttaaaata      4500
     ccaaatagag aaaaatccag aacaattccg ggactttaaa atcgtcgatg gaaggatttt      4560
     caagtttatt acaaactcga ctatacccga tgatccttct ttcaggtgga aggaggttct      4620
     tcccttctca gaaagaccac tcataataga gaaaattcac agtaatgcac acttaggttt      4680
     tctcaaaact ttggagaagg tccgtgagcg atattattgg ccacgcatgg cgactcagat      4740
     caagcaattc tgtgccagct gtctagtctg caaagaatcg aaagtcccga atttgaacgt      4800
     acgaccaccc tgtggcaaac ccaagttgtg tagtcgtcca tgggaattaa tttcaatcga      4860
     cttccttggc ccctatccaa agaccaaaaa agggaatgtt tggatattag taatttgcga      4920
     ctttttctcg aagttcgtac tagtacagtg catgaaggct gccaccgcgc caggcgtatg      4980
     cgccgttatg gaaaacttag tatttaatct cttcggggca ccctcggtgt gcataacgga      5040
     taatgcgaaa gtatttcaat ccgagatgtt tcgaaaactt ctggctcagt atggcgtgac      5100
     gcagtggaat ctcgcggttt accacccgag tccaaatcct gcggaacgcg taaaccgtgt      5160
     catcgtgaca gctattcgat gtgcactaaa ccgccaaaca gaccaccgaa attgggacga      5220
     atccgtccac aaaattgcag cagcgattag gactagcgtg cacgaaagca ccggtttcac      5280
     gccgtatttt gtgaatttcg gtcgcaatat gataagcacc ggaacggaat atgatcatct      5340
     ccgcgacttg gagttggaca ctgagtacaa tccggcgcat agaagcgtag aagtacggaa      5400
     aatgtacgaa ctggttcgac aaaacctcca ttccgcatac caacgctatt ctcgaccgta      5460
     taacttgagg gcaaacgcaa aacacacatt tagcccaggt gatatcgtgt ataagcgtga      5520
     tatgcacctt tcagataaaa ataagcactt tgtcggaaaa tttggcacta aatacagtcg      5580
     tgcaaaagtt caaactgctt taggcacaaa tacatatgtc cttgaggatg agaaaggtca      5640
     tcggattccc ggcacgtttc atgggtcttt tcttaaaaag gcttaaaaga cctgagaata      5700
     cgattacaag attttttcgt atgtaagcac aagctatgac tgctttacgt tcaccgggta      5760
     ttgcacacac tataaggaaa ccaagaaaaa tacacaaatt ggtggtgata cggttaagtc      5820
     acgtcctaga gctctaactc ggtcgttgac ctcgatagat ttgcactcag ttgtgcagat      5880
     catcagctat gaaagtgcat aagccagatg cacgaacaaa ttaagcacaa aaattgcaaa      5940
     acgaaaatac tctttgaggt gcacaggcaa atggtccagc ggttgagatg tcctatggtt      6000
     tcctcccgtt gttgaataaa ctcagtttct cacgaatagg agtcagccta aagtctgctc      6060
     agccagacaa aggtcgttga ccctgcgttg cgaagcaaaa ctttcacgat agaacagacc      6120
     tcctttgttc ttaagggaga atctggaatc cttctattgt tatttctgta atatagtcac      6180
     tttgaatttt taatatttgt acacgtaaac acaatttgct cgtaattatt ccgatgcact      6240
     aggtccgtag ttattcagat cagttttcca cactcaagta tagccgtagt tcatagatcc      6300
     ttccagcaaa tttgttaaat cgtccaatat acttaccaca atagcattct cacaaccatc      6360
     tccgtcaaag ttactttttc atctaactgg tgttggcact tcttgtcagc actcacgtga      6420
     aactcaccca tgcgagttac tatgttgact gaaaggcacg atcagggcgc gaatgagacc      6480
     ggtacgagcg ttgataattc ggttcgagtg gagatacctt tagaagtcag tttccaattc      6540
     ctaaattgga gttaatttgt tcggacaaca tcggtttcct gatatttcag gtgtaattcg      6600
     gattaggata agaccatttt ttcagatatt tctgaagtca ttagtgatac gaagtgaaga      6660
     atgtgtgaag agcatgaatc agatcagtca ggcattcgga cagaaagaat atagatggaa      6720
     cagtacaaca tagtggttca aatggaaaga tttgttcaat aatttgcata atttatactt      6780
     caaccctaga atttattccg atgttcagtt tagataattt tgattaactt aaccaaactt      6840
     aacttaatcc aatacaattg ttcgtgtttc catagtaaaa atgtacttat ttctagcaat      6900
     aataacttat aaaaattttg aaattttatt ttgaaatttc aaaattttta tttttttagc      6960
     gtgtgcgtaa a                                                           6971
//
ID   Gypsy-534_AA-LTR repbase;    DNA;    INV; 1692 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-534_;
KW   Gypsy-534_AA-I; Gypsy-534_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1692
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1692
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3158-3158 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1692 BP; 457 A; 398 C; 398 G; 439 T; 0 other;
     tgtaacgact ttctaataca ttgctatgtg attccttagg aatcccatca caatatgaat        60
     attgcgcaac tgacagcatg tggcagtgcc atctcttaag aaaaagggga attgcgacac       120
     tcgcgtgacg gaatctatgg tccactcaat ctctctccca ccgtccagat acaggtagtt       180
     aaacgaagtg tagagtatga gtgcatgcgg agtgagatgg ctcacgcccc cagcaataag       240
     gattgcaata gggatcgcag cgcataccat aagaggaaat gcgaaagagt atcttcggat       300
     cgggctacgc ggcagatatg gattggctga ggtatatctg cattgcagat attttagcac       360
     tgcgaatttt gaacaatagg tgtttaccag ttttgcgaat ttgtattgtt gagcctgagt       420
     tgaggcatgt agaagggaat gccactaaat cacttttgtg aaggcaagcg attgagtcac       480
     acgtaggcca gtttcagttc agttcgatta gagaaagata cttaatacct ataaaccagt       540
     tctgtgcttg gtgaatagtt gaggtgagaa ttgaagattt agtggtagat ccaaactaaa       600
     caaattctat agtttgcagg ataatagtta atccgttgat aaatatagta cactgtgtga       660
     gtgataagca taaaaaaagc ataggtaagc cagtttgtga tccaaagctt ttaggaagca       720
     ttctaatttc gttgtgggat agctttccct gaacgaaggg tttttatttt gggatttaga       780
     atccccaagc ttgtcggcgc atcgagattt ccacgcgcat cgccgctttc acgcgcatca       840
     acggtctcac gcgcatcagc gcaagcctac gcgcgacggt gctcatcccc ttccggtgaa       900
     atcgttgaga ggaacatccc gcacgctaca ggagaacgct gcgactctcc cagcgccgct       960
     cccgaccagc gacgctcaag cccatcgcct tccgttcatc gacgatcgat ttgagttccc      1020
     cagacgccga gtgatctcac agtgccagta cgaacgacac ccgtagccag ggtggagcac      1080
     tcagtggatc cccattagcc gagactgcag agaagccgcg aaagccgccg cgctctctct      1140
     cgttatcact cagctccgcg ctgagaggtc agccatacga tctggcgctc tagggagcga      1200
     ccgtgataca ccaacgtgtt gcaccccaac cgaccatcat acctcgtcag ccacccatca      1260
     aatctccaga gctgcagtct gcaggtcacg cgacatcgat tggagcaaca cgacgattgg      1320
     gccccaacgt cagaacacaa tttgtaagac aaactgtaag tttttcaccc ctttgagctc      1380
     aaagtaggat tagttatgat tataaaattg tgaaacgcaa caactgcacc tcaatatatc      1440
     gctttctttg cttaattggt taaggctttc ctaaattagg ttttaaaatt ttattcggtg      1500
     attctttttc catttcttaa ttcgttagag cttccatttg ggttggtcgg agaaaaatgc      1560
     gtgtttgagc cacttaaaat actcgcccgt gtaaagagtc tcttagccgg acctttgaaa      1620
     agcgtcagca gtctctctaa cccgagagtg gcgctaaagc tgctgtacgt tgtgtgctaa      1680
     gcaagcgtta ca                                                          1692
//
ID   Gypsy-535_AA-I repbase;    DNA;    INV; 5843 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-535_;
KW   Gypsy-535_AA-I; Gypsy-535_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5843
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5843
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3121-3121 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5843 BP; 1927 A; 851 C; 1392 G; 1668 T; 5 other;
     attggcgacg aggataaagg taggatattt ttttgatttt tacaaagaaa ttcagtaaag        60
     tcaaattaat gtgagtttat ccggatgatg tgctgaaggt tgtgttctat tgtgaagtaa       120
     gtgtcttgtt gagaatgatt tttaccaaca aatgtgaatg gattcatcgt aataaaaaaa       180
     aacggtgaaa atagcatatt tttggtgatt ttggtaagta atgcaaattt tctctaagtg       240
     aaaaaaaaac tttgcgtttc catagcaacg acagcaacac tgtacactga ggttcgtggg       300
     tgaacaattc tgccctaact tgatgattga tgatggttga aagcttgctg ctgacgatta       360
     actgtttcta tagtaacacg ctatgccact gtccttagta tgtgtggtag gcctaaattt       420
     gcacaagtgt tgttaatgtg ggctgtcatc agtgtttatt ttgttcatga tatgaatgaa       480
     tgatcaggta cagtcaatag gaaggaacga gatggcaaga acgtgtttgt ttttctgcgc       540
     gtttttgtaa agaaaacagt tatgtttgag agctaaaaag gtgacaagaa ctaaattttg       600
     tagtacggat tgagttttgt tttgcagaag caaattgagt gggagtggaa ttcaataaga       660
     aatagtaatc aaaatgcaga tcggtgtaaa ttgaaattat tgaaatagtg atttataacg       720
     tgttgattga caaatccagt agaatatgtg tagacggagt atgtaagtac caattcaatg       780
     ttcaatttgt gaagcattca ttgtcggtgt tatcaaatga ataaatatgt gttgattatg       840
     aagttctatg attttattgg aatgaagaat gaaaaaawat cagtctattg twttcacagc       900
     gtattgatta wtctgcatgt gtagaaccag gagcgttcaa aggatgaaag tgtgacttgg       960
     aatgttttga tattgaacca ggagcgttct aaaggagttt tatattgaac caggagcgtt      1020
     cggaagtaat tttcattgaa ccaggagcgt tcttggaata ttttgaattg aaaaaaagga      1080
     acatttgaat tgaacaggat tgaaccggaa gtgttcaaag gaaaacattg gaaggatgtt      1140
     ttgacttgca ccatgtgtgt acaaataatg tttttgattt gaaccagggg cgttctagag      1200
     aaaaaatttg gagtgaactg agagtgtttg aaggatttta cttgcaccag aagcgttcaa      1260
     aggaaatgtt ttaacttctg aggagttcat aaatgaaatt gttcacaaat actcgactat      1320
     ttgtaaacag tctagtacgg ttgcaaagta tacgcaatag aaaattcaaa agaattggta      1380
     caaatttttg tgggtggata gatgaatcga ccggtgtaca gtgtaaggga tgtgtttgat      1440
     tcaattgtta ttatattttt tttttatcat tttatttgat aaaaaaatga attgttattt      1500
     gatcacaact gccatcatcc ggatattcaa gttataagaa aaaaatcttc gtttgattgt      1560
     ttgtttgaca aatttgatat ggaaaacatt acagatggag gaatcgcgtc aaattgcacc      1620
     attccgttgc gatatgatcg agaaaggaaa actttcaaga gaatgggaaa cgtggaagtg      1680
     gtctcttgaa tgctatttcg aagcattcga cataacggac caaaagatga agcgtgctaa      1740
     attgcttcat ctaggaggag tggaattaca acgaattttc cgtagtttac ctgagcatgc      1800
     caaaatgcca ttggtaactc ttgagccgaa agtctatgat ttggctatag aactactcga      1860
     ttcatatttt caagcgggaa gacaggatgt tattgagcga aggaagcttc gtaagctgaa      1920
     acaagacgcc aatgaaaaat tttcgcacta cgtcattcgt cttcgtcaac aaagcatgaa      1980
     ttgtggattc gagaagtatt cggccgaagt gtgtgaagta cttaaggaaa tatatctgat      2040
     tgatgtagtt gttgaaaact gtagatcaga tgagttgcgt aaatcaattt taaaacgcga      2100
     tcgcacgctg aaagaaattg aggagattgc ggcaactatc gaggatacag atcaccagat      2160
     gaaagagttg aaagaaagta acaatgctac gcgagaatct gcggtttatg aaatcgaaag      2220
     agaaagaaag gccagtccga tagctgcgaa gtttggtgga aagcaatctt ctgctaacaa      2280
     acgtcgattc aatcaacaac cgtcttcaag gaacttgaaa tcatgttttt cgtgtggaca      2340
     agcaggacat ttttccaact cgttggagtg tccagctcga ggtcgtacat gtcgccggtg      2400
     tcaacaactt gggcatttcg aagttgtgtg caagaaacga aaacttaaca ctcagcaaag      2460
     agactacaag aaaacttcaa acaaagtgta cacggtagag tctgagcacg tcaccgatat      2520
     ggatgaggtt gaggatccta ggtcagacga aaaaatctat tatgcgtttt atggaggtaa      2580
     cgagagcaat gttttggaag ctacgatcgg aggtattccg atcaaggttt tgattgattc      2640
     tggtgcagat gcaaatttga ttaggttgga gacctgggaa acactgaaag cgaaaaaggt      2700
     gcgagttgtg aaatcagtca aaggttcatc tcgtactttg agaggttacg gaagtgatag      2760
     accactcgac gtagttggaa cttttgaggc agaagtaggt attggtcgtc gatcagtggt      2820
     tggtgaattt ttcgttgtca gaggtggcca aaaggacatt cttggtgacg tgacggcgaa      2880
     gaatttaggc gtcctcaaag ttggtgtaga agtgagtaat gtcaacgtag aacacaagcc      2940
     gtttgctaaa atcaagggag tggaagcaac aattgaaata gatccggagg tcaagttttg      3000
     tttcatttat caatatttaa attattaatt ggtcattaat tacataggtc aaaccagtgt      3060
     ttcagccgtt acgaagagtt cctataccga tggaagcggc agtgaatagc aagttggaac      3120
     agttgttact tcgtgacata attgaagtca agaaaggtcc tgcaacgtgg gtgtcaccac      3180
     tagtagtggt cgggaaagca tctggagagc cgaggatttg tttagattta agacgagtga      3240
     acgaagcagt gattagggaa cattttccaa tgcctgtggt cgaagagtat cttgcgcgat      3300
     tgggaagagg aaggatttgg agcaaactgg acatacgcga agctttccat caggtcgaac      3360
     ttaatgaaga atcaagagat gttacaacgt tcatcaccaa tcgaggactg ttcaggttca      3420
     aacgtttgcc gttcggatta gtgaccgctc ctgaaatttt ccagcgtatc atggaagaga      3480
     tgttatcagg atgtgaagga acctgctggt atttggatga tgtcatcatt gagggggaga      3540
     caaaagagat tcatgataga aatttgcaaa aggtagtgtt ttaaaatttg ttcaaaggta      3600
     kawtagatgg ttaataaata aaagaatact ataaatttat ttctaggttc ttgataggtt      3660
     cagagaaaga ggtgtagaat tgaattggga gaaatgtgct ttcggagttt cccagctcga      3720
     ttttctgggt catcatattt ctgatgttgg tataagtcca tctcaagcaa aattgaaggc      3780
     agtttcatca tttcgttcac caacaactga gtctgaagtg aggagttttc taggtttagc      3840
     aaactatttg aacaaattta tcccggatct tgcaactatt ggtgaacctc ttcgaaatct      3900
     tacgaagaag gaggcaaagt ttgagtggac tgctgtacac gaaaccgctt ttcaagctat      3960
     caaatcaaag atagcctccg caactacatt aggatttttc aacacagaag ataagacaat      4020
     attgattgct gacgcaagtc cttccggatt aggatcagtt ttgttgcaag aaaatgctga      4080
     aaatgaacac cgagtaattt cttttgcctc taagtcgttg acggatactg aaagacgtta      4140
     ttgccaaact gaaaaagaag cattggcatt agtatggagt gtcgagcgtt tccggatgta      4200
     cttgtatggt aaacatttca ctttgatgac tgattgtaaa gttttggagt atttgtttac      4260
     ccctcgttcc aagccatgtg ctagaattga gcgatgggta ttgcgattgc aggcatttga      4320
     ttaccatgtg atatatattc ctggaaagca gaatatagcc gactgtctct ctcgattggc      4380
     aaccatgaaa tcgatcgcat ttgatccaga ggaagaaata attattcggg aaatagctga      4440
     gatggctggc tccacgtttg ctcttgaatg gagtgaaata aaggatgaaa gtcagaagga      4500
     ttctgaaata tccgatgtta tattccagct tgcaaatgaa aatcaatcag cactgccatt      4560
     atcatatcgt gtaatatcaa atgaattatg tagcattgac gaagttctat taagagttga      4620
     tcggattgtt attccgcata ctcttcggaa caaagttttg cgtattgcac atgaaggaca      4680
     tcctggggtc aatatgatga aaagtcattt gaggactaat gtatggtggc caagaatgga      4740
     tcaagatgtc gagaagtttg taaaactttg taaaggttgc acattagtgt ctgcaccaaa      4800
     tgcacctgaa ccaatggtgc ggcgtgagat tcctgaccaa ccttggacag atgtggcagc      4860
     cgatttcttg ggaccactac cggagggaca gtatttatta gtaattgttg actactacag      4920
     tcgatacatg gaggtttgtg aaatgaagga aacaacggct gcagatacta tacgagagtt      4980
     ggctattgtg tttagtcgat atggacttcc tgtgacatta cgcgtagata atggtccaca      5040
     gtttaatgaa aagtgtgttg aatttcaaga tttttgcaaa agcaacggta taaaagtcat      5100
     caatactatt ccctattggc cggcaatgaa tggtgaggtc gaacgccaga atagatcaat      5160
     attaaaaaga ttaaggattg cgcaagatct gggtaaggat tggaggttgg tgttgaggca      5220
     atatttgcta aagtatcatt caacaaatca tagtgtaaca gggaaatcac cagctgagat      5280
     tatgttcgga agaaagattc gtaataagct acccagtgta cctttcacag aagttatgga      5340
     tgaagaaatc agagatcgtg acaaggtaca taaagaaaag caaaaagaat atattgataa      5400
     aaagagatct gctaaagaaa gcgaaattgc tgttggagat tgtgttgtgt tgaagagaat      5460
     gaagaaaact cacaagttac agtcggatta ttcaccggaa gaatttcaag ttgttcgtaa      5520
     agtaggagga gatgccacag tgcgatcata tgattctggc aaagaataca ggcgaaatgt      5580
     ggcacatttg aagaaaatac aacaatcaaa tataacatca actggaaaag atgacgaaaa      5640
     ggagcatgaa gcacgcagat taaatgatag tgaaccagag gtaggacaat tcgaaaccaa      5700
     ccgacaaaat accgaaatag gaagagaaaa agtatgcgaa gcggaaaaag cagaagaaca      5760
     gataaattca aaaagagtaa gaactgaacc aaaaagatac aaggactata tttctcatta      5820
     aaatcataaa agtaaaggag ggt                                              5843
//
ID   Gypsy-535_AA-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-535_;
KW   Gypsy-535_AA-I; Gypsy-535_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-203
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-203
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3159-3159 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 203 BP; 66 A; 24 C; 52 G; 61 T; 0 other;
     tgtagagtat caggaggaga tgaaagataa aaccttgcat cgtggtaggc tagaaaatgg        60
     acagtcagtt agttggagag aaatgtagta ggaggttgtt atcggagtga ttctggatga       120
     gtgaagaata aaacgtatta acaatctgaa ctgtaattcg ttccgttaat ttagtgatct       180
     gaagtcctta cttattctct aca                                               203
//
ID   Gypsy-536_AA-I repbase;    DNA;    INV; 5631 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-536_;
KW   Gypsy-536_AA-I; Gypsy-536_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5631
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5631
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (02-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5631 BP; 1731 A; 1118 C; 1448 G; 1334 T; 0 other;
     atttggcgca gccggtacga taaatcgtga gtattttttt tctggtgctt tattttagga        60
     tgcgtagttg acaaatgaaa attttgcgga ttttggtaaa tgatagtgga agaaatcatt       120
     tccgatgtga ttgtgatgta cggaaaagtg atgaaaaaag aaaagatggc gggtccggtt       180
     gaaagccgaa gcgctcagag aggaaaaatg tgagtccggt tgaaagccgt agcattcaaa       240
     gtaaaagatg gcgggtccgg atgatagccg aagcgctcat ataaaagatg gcgggtccgg       300
     ttgaaagccg aagcgctcag agaggaaaaa tgtgattccg gttgaaagcc gtagcattca       360
     aaataaaaga tggcgggtcc ggatgatagc cgaagcgctc atataaaaga tggcgggtcc       420
     gatggaaagt cgtagcgccc agaagaggga taaccgaagc gggtaaaaaa aaaaaaaaaa       480
     aaaaagagaa tgaagtggtg gtaaccgaag tggctaaaac aaagcaagga aaaaaaatga       540
     agtggtaatg gcaaattcaa tgcaagacca atgagagtgt aatctgaggt gacgtaatca       600
     aaagtatgta actgatgtat gctaatgcaa cgagggtcta aatcgacaac aaaagtcgta       660
     agatcaatga gagtattacg ctatagggtg gagatcatta ggttgaatac gtgacgtcat       720
     cgatgatcat ttgaggttaa aaaaaaaaaa aaaaaaaaaa cgaaagagtt agggtagtgt       780
     ggagatgcat agcttttgtt acgtaactat tacttgctca ttggatacac ggatgtaaca       840
     gtgttttcct tttttttcga tttatcgcaa attagatgag cgaggaagga ggacaacgtt       900
     gggcgctggc agcgtttgac gccacggtgg atgcgcaagg tcttcgacga gaatgggaag       960
     agtggcacag gtcttttgag ctccttgccg aaatgagaaa catccaatct caacacgaga      1020
     agctggtaac gatgctgacg tacggcggca gaggattgca acggatcttt tacaatctga      1080
     agccagtacc ggaggaagtc atacctggac cagtgaagat accgttgatg ccaccaccag      1140
     ttccagagta tgacaacgcg atcaaacgtc ttgaaaagtt tttcgtcgga aagaggaacg      1200
     atcgcgtgga acttgaggtg tttcgttcct tgaagcagaa gggagaagag tcgttcaacc      1260
     agtttgtgtt gagattgcgc acacaggcgg cccgatgcga gtttggagac cgcgaggaaa      1320
     cggagatcct tcagcagatc accatgggtg ctcgagatga ccgggttcga gataaaggca      1380
     tggagagcgt tatgaacctc gacgacttga caagttacgc aatcaatcga gaaatgctga      1440
     tgcagcaaag ggacaagttg aggccattcc gccaggagga aacaatcgca gcagtgaatc      1500
     aacatatgcg tcgatctgga gttcgaaatc gtgatccgga tggctcagag aactggaacc      1560
     gtcggccagc gggccgaaga gatttttcac gtggcttcaa gtttggggaa cggccagcaa      1620
     caggtgcaac aaatcgctcg cgcactgaat gtggccggtg tggatcgtgg cgacatgacg      1680
     gtaactatgc tcgttgccca gcccttggat cacagtgcca caagtgtggc gaacccggcc      1740
     attttgctcg gagatgccga aatgatatca ggcaaggaaa aaccacatgg agacgtccac      1800
     caaaggaagt caacgtgctg tcggatgaat ggaatgaaga catgcctcgc cgtccaaagc      1860
     cggaagatat ctcgaaggta gaataatctt ctataatacc gtttaactct ttctggtttt      1920
     tgtttttttt ttgtgaattt taacctgtta taaaaaaaag agaaaagaag atcaaagaaa      1980
     agatcaaaat aaacgacatg attttttttg ttaagcattc tttcagtaat tgtcttttta      2040
     ttattcgaca ggtggaaaag gcaggcacga atttgaagga tggtctcatt acatgcatga      2100
     ttgatgaata tcccgttgaa ttcctgatcg attctggttc agccataaat actattaccg      2160
     aggatatttg gcagcagctt actgcggccg aggctaagat cttcaataca aaaacacatt      2220
     gcgagcgtaa ctttacagca tatgcaagca gtgactcctt gtgcgttttg actgtcttcg      2280
     aggcctacat ttcggtaaat ccgtccaagc cacaaagcta cgcagaattt tttgtagtca      2340
     aaggagcaac caaatcgtta ctaagcaaaa ccacctccga agagctttgt gtgttgaagg      2400
     tcggacttga ggtcaaccat atcgaaactg cggtaacacc ttttccaaag ttcccaaacg      2460
     ttcaaataaa attatccatc gacaaaagtg tgacaccgag gcttatttcg tatgtgagag      2520
     tccctgtgtc gatggagaaa aaagttgacg acaaaatttt ggaactgctg cgtaccgatg      2580
     ttatagagaa ggtagacggt ccaccagaat ggatatcccc aatggttgtc gttccaaaag      2640
     gcaaggatga tgtccgtctc tgcatcaata tgaaatatcc gaacgaagct attcaccgag      2700
     aacactatcc acttccggtg atcgacacat tcctacacaa gctaagagga tcgaagtttt      2760
     tctcaaggtt ggacataaca tcagcgtttc accatatcga actgcatcca gagtccagag      2820
     gagtaacaac gttcatgacg tcaagaggat taatgcgatt caagaggtta atgttcggta      2880
     tcacgtgcgc gcctgagatc ttccaacggg tcatgtcgga catgttgggt ggcattgacg      2940
     gggtcatcat atacatcgac gatgtcgtca tagctgggga gactgaacag gagcacgaca      3000
     aaagattgca acaagttctt tcggtattac gcaacaataa tgccatgctg aacgagagca      3060
     agtgtgtttt tcgcgtacaa gaacttgaaa tactgggttt caaggtcagc gcgaccggct      3120
     tcggatgaaa agattctggc aataaaaaaa ttcaggaagc cggaatcgaa ggaggaagtc      3180
     cgcagcttcc tgggactgat aaatttcgtc ggtcatttca ttccgcggct gtctacgaga      3240
     actgaacccc tacggcagtt cattcgaggc gaggttgaat catttggaag tgaccaagtg      3300
     aacgcgtttg aggatctacg tctggaactg tcgaagaaag tgcaggagct aggattcttc      3360
     gaccccaagg aagaaaccga gctctatgtc gatgcctccc ctgttggact tggggcggtg      3420
     ctagtccaaa gggatgcgac gggtatggca cgtattataa gctttgcttc aaaaggcctg      3480
     actgcttccg agaggatcta cccacaaacc cagcgagaag ctctggctgt ggtatggtca      3540
     gtcgaaaagt tttatttcta cttgttcggg ctgcacttca cgatctttac ggatcacaag      3600
     acattggagt acatctatgg ggggaagcat caagctggac gccgtgcctg ttcaagggca      3660
     gaaagctggg cgttgcggct gcaaccctat gattttgaca ttaaatacct tcccggacct      3720
     gctaacatct cggatattct atcacgcctg gtggcccaag aggatccagc gttcgatgat      3780
     agtactgaac atttcttgtt tgctgtggga gaaggcccag atttgggtcc agcggcgatt      3840
     acgttggccg agatcagacg ggagactgag aaagacgaaa ctttatcagc ggtcatcaaa      3900
     gccttggacg ctggtgagtg gccaactgaa ttgtttcgct atcaagcctt cagcaaagaa      3960
     ctgggaatta ttgatggagt gctggttcgc gattcgagaa tggttttgcc tctaaaacta      4020
     agagcaagag cactagaaat cgctcaccgt ggtcatccag gggtggtatc catgcgccgc      4080
     aatctaaggg aaagagtgtg gtggccctgc atggacaagg acgtgacaag taaaatccag      4140
     gagtgccacg gatgcgcagc agtcagcaga caaaatccgc cagaacctat gctacgcacc      4200
     gaaatgccac aacgagcctg gcagcaaatc ggaatcgatt tcttttcggc taaagagtgc      4260
     gcaacattcc tggtgattgt tgactatttc agccgattcc tcaaggtgat cgagatgaaa      4320
     gggacaactg ccacgaaaac aattgaagct ctcgagggtg tattcgtcga acaaacgtat      4380
     cctgaaacga ttcgttgcga caatggtccc ccatttgcaa gcgaggaatt cgctgagtac      4440
     tgtttgggca agaacattcg aatcatccat acaatccctt actggccaca gatgaacgga      4500
     atggtagagc gccaaaatca agggattttg agagcattaa gaatcgccaa agcaaccggt      4560
     acagagtggc ggaaagccgt tcaggagtat gtctatacgt ataacactac accgcattca      4620
     gtcacagaaa aggctccgat ggaattattg atgggacgtc cagtgaaaga tctactccca      4680
     tctctaagaa ctgaagcaac atctcttcgc gatgaaagta ttcgcgatac cgatgctatc      4740
     aagaaaatta aagggaagct gtatgcggac gaacacaggc acgcgaaatc atcagacata      4800
     gcggttggtg attccgttat gctgaagagc tacgacagtg gaaagctaga cccgaacttc      4860
     cgactggagc gatttacagt tgttaaacgg gcgggcaatg acgtgatagt cgaaaatgaa      4920
     gagggtgtgc agtatcgcag atgcgtgaca cacttgaaga aatggccggt ggcagcagga      4980
     ttcttggatc atccggttcc tgaaaacgaa gaggctgcaa cggaatcgtc gggggcaaaa      5040
     gcatcaaaac gagaaaagcc ggcgcctgta gaaaccgaac caggagaggc atcggccaag      5100
     cgtccggcaa gggttacgaa gagaccagct cgattcaatg tgtgagcgac tgtgggaaat      5160
     catactggaa tgaaaaaaaa aaaacaataa taattattaa atcctatttt ataagattct      5220
     taccttgaat tcgtcttcta ttaaactgaa taaaaacaaa acagaatgta tatggatttg      5280
     catttttgtc actccaaaca agaaccttcg cttgtgtgga aagctctaat ctgtatagta      5340
     aaaacaaaac aaaacaaagt aggcaataat aaagtgaggt atgatcagat gattgcataa      5400
     cacacggaaa aatatctacc aaatgttgtt attttttttc cttctgtact taaggtgaaa      5460
     catctcagat tccaaagatg gccgatataa tggccgacta agggcacaac tcacgttttc      5520
     aagggcacta aactgggaaa atagttggca tacatttgtg taaatagtaa caaatattta      5580
     ttcgtggaag tgattttttt tcttctcttt taactcggac aaggagaggg a               5631
//
ID   Gypsy-536_AA-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-536_;
KW   Gypsy-536_AA-I; Gypsy-536_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-276
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-276
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3160-3160 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 276 BP; 84 A; 53 C; 74 G; 65 T; 0 other;
     tgtagagttc tgataataat agttttataa tgctcaaatt acaacacaaa gttgggtaaa        60
     caaactttac cgtgtgagtg gagagtttgc agaaacgccg tacttcaagc atctccctcc       120
     acactcgcag cgcgggaatt ggctagcgcg agtcgagtca attggatagt aacgaagcta       180
     gcggccggac gtgctgtcgt aagtaggagc aacacagtgg aattaaacaa ggaggagcag       240
     ttcgcttcgg aacgagggta ttgtacagat tgtaca                                 276
//
ID   Gypsy-537_AA-LTR repbase;    DNA;    INV; 1264 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-537_;
KW   Gypsy-537_AA-I; Gypsy-537_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3161-3161 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1264 BP; 397 A; 296 C; 280 G; 291 T; 0 other;
     tgttaccgtt taggtacttt accctaaaag agaagccata gcagagcgag attggttcgc        60
     tctcgcgaaa cagcaaagga aagcatatgt atactgctgt tcgttgcgaa cttgtgtggc       120
     actcacaagt aactctggta ctgatcaata gttaatgatt tacataaaat aatcatgatt       180
     agccacaagt tgatgattct tataagaaac tacccattaa atactacatg ttagtaaaaa       240
     tagaagcctt attgattagc taggagttag gaaactggag taataaaatt ctactatgaa       300
     cggtcaaatt aaatacacat ttacacttga catacacgaa acaacaccca ccacccggga       360
     tcaaagaata atgggaaatt tggtcaacga aatcagcata ggatataaaa agggacattt       420
     agggaaagga aaagggaaat ttggggtcag ctaccggtcc aatcgaaaag atccgttctt       480
     ttccactcca actaccaagg aagtaacaac caagtgacgc tttaagtgaa gttaagattt       540
     gatagagtct gataaactct gataatagtt agtctaattt gtgaagtgga gaagtatttc       600
     ccgcataaat tcttctagga tcaggtaaag ctttgcaaat tccggaccgg ttagcagagt       660
     ccttaatggg ccccatatcc ctatattcct atcaggaccc attggtgttt taccaagttt       720
     acggtgatta cgtcatctaa ccgtcaacta gccatagcac cttgcctaag aggacgacga       780
     agcacgtgca cggcacgcac tccaatcgga gctagtctag ctcggccgat catcaacggc       840
     gcgattctgc ggcacgtgat tacgtccgat tcctcccccc aatcatcgag aggctgaggt       900
     tagaacccga gatcgacagt ggagcgccca tcccgtccca ctggtgtgga ctgacgatag       960
     cgagcagaga cgattgtcca cgtggtactc agccgaccaa accccagcat cccgaaagct      1020
     agtagcccat cgctagttct caccagacga agtccccgtt gcagcaaagg tccctacgcc      1080
     ggccggccac cgaagaacct acacacctac acatacacac acccaattgt aagtacactc      1140
     aataaacgac cgatattcaa gagaagagtg cgtattgtgt tcccgatcag aatccgagcc      1200
     gaccctgaaa gagtgtctga ggggcgcagc agaaagttag agctcagtgg gagtgagggt      1260
     aaca                                                                   1264
//
ID   Gypsy-538_AA-I repbase;    DNA;    INV; 6889 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-538_;
KW   Gypsy-538_AA-I; Gypsy-538_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6889
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6889
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3122-3122 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6889 BP; 2020 A; 1464 C; 1466 G; 1939 T; 0 other;
     tttggcgccc aacgtggggc cctgagatat ttgggcaatt tgtttcgttt cccggaataa        60
     gttgaaaatt tgtaaattta gtagaattag tttggaaact atattattgg atttggttta       120
     gttttagttt ggatttttct ttcggtttct tgattgaatt cgttagctta atattctagg       180
     attagatttt gtttatttgt gctgttctat ctatagatat aagtttttct ttttcttttt       240
     tttttctaaa gtgactatta ttattatatt tacataccac tgaatttgct ttgcattttg       300
     atatttacag accaacatgg acgaccgtat ggtccagaat tcgacctcta actcccaaag       360
     aactttggtg acacctccga ggggagaatc cgaattttca cggcaagaaa tccttggaaa       420
     tcggattgaa gccggccagt atcgcgagca tcgtctggcc tgggctgatc agatcatcca       480
     aaatcactcg atggacagtc gtttgccagc tccgaacaat ttgcaggccg aaatggaacg       540
     cgcttcaaga gtaaattttt ccgcggatgg atttcaactc ccattccgtg ccgttcaaaa       600
     taccacgtcg caagaaactc cttatggcag tgcttggtta ccagcaccac cgaacacttc       660
     tcgattttcc gaaccggtag cgagtgctac tcgatacagt accgggaacc ctttgaatgg       720
     tggaaacttt cctggtttgc agactgtaac cacctcaaca gtaaatttgc ttcctgagtt       780
     agtatccact tccttagaag gcgatttgag accgattttg aactcgacgg tacagccaaa       840
     tctatcggaa gcagcggcct ggccatcggc ggcgattagc tccgaagtta ttgaggactc       900
     gtcacgaatg ttgaatcctt tcctttcgga atttgacgct tccgcgcaac caactcctcc       960
     tcaccgacat tctcagccat gtcctcaagg gaatcagtct tcgtttcaac ctgaaaatga      1020
     gacacagttt tcgaataact ttgtacatgt ttctgaaatt caaaactatg tcgagactta      1080
     cgttcgtcag ctgctggcga atccctccca ggggcgtcca actttccatg acgttgatgt      1140
     tgatcggctt gctcagcaaa tggaagatgt cggcattcag aatgtggatg ttacacggag      1200
     gtcccattcg tcttcggctc ctcaagggcg acctacactc tctccgcctt tacagagaca      1260
     agcgaccgga ctttctggaa atgtttcaga aaatagagaa gaatcgagga atgaaaatac      1320
     cccttttgct ttccgacagg tattgcgtaa ttcgtttccg agtttccaga atccagtgta      1380
     ccctggaaga cctacggcta tttacgaaca agggcaacga catgcaccca cagttcgagt      1440
     taattaccca tccaatccct ctcctaatcc ttcgttgcga ggcagtggaa cttcaaatca      1500
     tattccgcgg ggaagattgc ctcatcaaac ctgcaacatt ttggaaaaat ggccaaagtt      1560
     tgcgggggac acaagtacaa ttccggttat cgattttctg cggcagatcg aacttttgtg      1620
     tcggtcgtac cagattacca aagaggaatt gagaacacat gctcatcttc ttttcaagga      1680
     ggatgcttat gtttggtaca ccgcttacga gccgaaattc gattgttggg ataccttatt      1740
     attctacctt cgtatgcggt acgataaccc gaaccgtgat cgtttcatta aggaggaatt      1800
     gcgtaataga aagcagcgtc caaatgaact ttttagtgca tttcttacgg atattgaaac      1860
     actttgccag aggttgatga aaaaacttcc agatgacgaa aaattcgaca ttgttgtaga      1920
     aaatatgaaa atgtcataca aacgtcggtt ggcattggag aaaattgatt ctctggaaca      1980
     tctagcacaa ctttgctata aatttgacgc tctggaagga aacctttata atcctcgaag      2040
     tgcaaataga cctccgatgg taaatgaaat agactatgat gaagcggaaa ttacccgtcc      2100
     tgaaacggag gccgaagagt gggaaatcgc cgctcttcaa gctcgtcgaa cacacacaga      2160
     gcgttcgaaa gatcagccaa ttcgcaaaac cgagggaggt gacaggtaca atcctctatg      2220
     ctggaattgt agaaaggtag gacatttgtg gagagaatgt gaccagaaga aggctatttt      2280
     ctgccacatg tgtggtcatc ccgacaccac agcgtttcgt tgtccacaac agcatgatat      2340
     ccgacctgcc tttgacacga aatcaaaaaa cgaatagata aggagcttgt cgggaaccga      2400
     actccttcga actccaacga catggttccc ttaataccat tttcgcaatt taatcagact      2460
     tatcagatta atacttgctt ccggcgatgt cctcatctca cggtttccat actagatata      2520
     gaaattgaag gattagcaga cactggtgca agtgtgtcaa ttattagttc accatctttg      2580
     atttatcgtc tcggattaaa aatccacgac tgccatttga acgttttgac tgcagaccga      2640
     acgtcttaca cctgcctggg ttatgtaaat gttccctttc gataccaaga cgtaacgaga      2700
     gtaatttcga cgttagttgt gccggaaatt tcgaagcaat tgattttagg gattgatttt      2760
     ttaagagcat ttaatttccg gttggtttgc gatcaaaatc aaaaacattc aaatgaatcg      2820
     tttgttgaaa tacccgaaca atcctctgat cttaattatc tacaagatta ttttggagac      2880
     gaggtggacc aaatatgctt tcagctggtg ccggctagtc aaccgagttc aagaagtgaa      2940
     cctccggagc ttgatgaaag cctcgagatg cccacggttg aagttccaac caaagttatt      3000
     gagcaacccg atgaaattga aacgcagcat aaattaacga aaggtcagca aactgaattg      3060
     ttcaacgcca ttaaatatct gcccatgacc aaagatggca atctaggtcg aacaccctta      3120
     ttaaaacatt ccatagaatt acttcctgga gcaaccccca aaaaagttcc ttcgtatcgg      3180
     tggtcacccg ccgtagaaca agttattgat gaagaaatgg atcgtttact tcgtcttgat      3240
     gttatcgagg aatgcaacag ttcagcggac ttcatcaacc ctctgttgcc tatcaaaaaa      3300
     cctacgggca aatggcggat ttgtttggat tcccgccgat taaattcact tacaaaaaag      3360
     gatgatttcc cgatacccaa tatgtcggtt atcttgcaga gaataaagcg agcccgctat      3420
     ttctccgtca ttgatttaac cgagtcctac taccaagttg aacttgagga tgacgcgaaa      3480
     aataaaacgg cctttcgaac caataagggt ttgtataggt ttaaagtcat gccctttggg      3540
     ctgacgaatg cacccgcgac catggctcgc cttatggtta aagtcttagg gcacgattta      3600
     gaaccctttg ttcacgtcta tctggacgac attataataa cgtctgaaac gttagaagaa      3660
     caccttcggt tgatccaggt ggtgggagaa cgtttgagta aggcgggtct gaccataaat      3720
     atcttgaaat ccaaattttg ccagactagc attaaatatc tgggttacgt gctaaccgaa      3780
     gaaggtctgt ctatggacgt ggcaaaaata caacccattt tggattatcc agcacctcgg      3840
     aacgttaagg atgttagacg tttacttggt ctcgctggat tctaccaaaa attcatccag      3900
     aattattcag atatcacggt tccgattaca gaccttttga aaaaaggacg acataaattt      3960
     atatggacca ctgaagcaga agatgccctt aaaaaactta aacaagcttt aatatccgct      4020
     cccatattag ccaatccgga tttttcgcag agcttcataa tcgagaccga cagttcggac      4080
     caggcaattg gctcggtttt ggttcaaatc cagaacggcg agagaaaatg tattgcctat      4140
     tattccaaga agctgtcgag cactcagcgg aagtatagtg cgaccgagcg ggaatgcctc      4200
     gccgtactgc tcagtataga aaatttccgc cacttcgttg aagggcatcg gttcattgtt      4260
     cagaccgatg caatgagtct gacctttctg cagtcgatga gcatcgaatc gaagagcccg      4320
     cgcattgctc gttgggccct gaagttgtcc aagtacgaag tagttctgca gtacaaaaaa      4380
     gggtctgaaa atgtctcggc agacgcgttg agtcgcagtg tgtatacggt tgacttgggt      4440
     ctagcagatc cttatattga agggctgaaa taccaaattg agaaaaaccc cgatcaattc      4500
     aaagacttca aagtggtcga tggtaaaatt tttaaattta tcaccaactc ttctcttccg      4560
     gaagatccat cctttcggtg gaaagaagtg cttccatttt cggaaagaaa gtcgataatt      4620
     gagaaagctc ataatatcgc ccacctaggt tttctcaaaa cattaactaa aatccgtgag      4680
     agattttact ggccaagaat ggcgagtcaa atcaaacagt tctgtgccag ctgccttgtg      4740
     tgcaaggaat ccaaggtacc gaatttaaac gtacggcctc cttgtggaaa accaaagcta      4800
     tgcagtcgac cctgggaggt catttctatc gactttctcg gaccttaccc aaaaacaaaa      4860
     aagggaaatg tatggatcct tgtaatttgt gacttcttct cgaagttcgt gcttgttcag      4920
     tgcatgaaaa cggccacaac gcccggcgtg tgcacagtaa tggaaaactt ggttttcaat      4980
     ctgtttgggg caccgtccgt gtgcattacg gataatgcaa aggtatttca ggccgagatg      5040
     ttccgaaaac ttttggccga ttatggcgta acgcagtgga accttgcagt ttaccatccg      5100
     agcccaaatc cggcggaacg cgtaaatcgt gttatcgtca ccgctatccg atgtgcacta      5160
     aaccgtcaaa cagatcacag aaattgggac gaatcagtgc acaaaatagc ggcggcgatt      5220
     agaaccagtg tgcacgagag caccggtttt acgccgtatt ttgtcaattt cggccgcaac      5280
     atgattagca ctgggactga atatgaacat ctgcgggact ttgagtcaga aaatgaatat      5340
     gacccttcgc acagacctat agaagttcga aaattgtacg acattgttcg gcaaaatcta      5400
     cattctgctt accaacggta ttccagacct tataacttga gagccaactc gaagcacacc      5460
     tttagtccag gtgacctcgt ttacaaacga gacatgcacc tgtcggacaa aggtaaacac      5520
     tttgtgggaa aattcggcac taaatacagt cgtgcgaaaa ttcagacagc cttaggcaca      5580
     aatacctatg tcttagaaga tgaaaaaggt catcgaatcc ctggaacgta ccatgggtcg      5640
     ttcctcaaaa aggcttgaag gaaagccgag gacgaatagg cacgatttcc tcataagaaa      5700
     acataagcta tgactgctat acgtttaccg ggtattgcat acactattag taaaccaaca      5760
     aaacacacaa attggtggtg atacggttta gtcacgtcct agagtttcag ctcgggcgtt      5820
     gacctctgta gatttgcatt caggggtgca gatctaaagc tatgaaagtg catcgaacag      5880
     atgcacgaac aactgagtca aaaatggcaa aatcaaaata ctcattgagg tgcacaaaca      5940
     agtcacacgt tagagatgtc caatggtttc ctcacgttgt tggcaaatat caaactttga      6000
     acaaactaga gtcaacctta ggtctgccag tcagacaaag gtcgttgatc ctacgaagca      6060
     aagcaaaact tttgctatac agcagatttc ctttgttctc caaagagaat ctcgcaacac      6120
     tccatagcac gttatgtaaa atagtcactt tggaatttta acacttgtcc gcgtattaca      6180
     ctaatttcac gttattcttc atatttactg tagtttagat ttgcgtcaga tagtttttca      6240
     caccgtccag taccataaac cgtcgatata tcctgtaaat tttcaatagt tgaacatact      6300
     caccacaata gcattgtcac atccatctcc gttgaattca cttttccatc taacgggtga      6360
     gggcacttct tgtccgcact caggcagaac tcacagtatt agagttacta tgttgactgt      6420
     atgttacgat cagggcgcga atgagagagg tatgagagtc ggtaggatag tttagtaagg      6480
     tttaaaaatc ctttttcaat ttgtaaattg gagttatcgg ttcggtcaat aacgatttcc      6540
     tgaaatttca ggggtaattc ggactaggat aagcaatttt tcagatatat ctgaggttat      6600
     ttgatttcga ttattaggtg aatgaaaggc gagaatgaat ttgattagcc gatgagaagg      6660
     aagttataga tggaacagta cagcatagtg attcattcag taattaattc cttagacata      6720
     gtcacaccga aagtcagttt aattcttccc attagtaatt tcggtttggt aaactttact      6780
     taatccaatt tatgtcttgt tttaaatgtg tttaatcata gatatgtttg ataaaaattt      6840
     tgaaatttat ttaaatttca aaatttttat ttgtttagca agtgcgaaa                  6889
//
ID   Gypsy-538_AA-LTR repbase;    DNA;    INV; 1588 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-538_;
KW   Gypsy-538_AA-I; Gypsy-538_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1588
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1588
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3162-3162 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1588 BP; 414 A; 369 C; 370 G; 435 T; 0 other;
     tgtaacgact ttttaatgat ccgcctggag attccatagg aatcccgcag aaaatacgac        60
     tgacagcatt tttagtacta tctctcaaga aagggggaga ttgctacgct cgcgttacgg       120
     aatttatggc tccactcgaa attctccggt accccaaatt caggtagcat aacggattga       180
     gtatgagtgc ttgctaggtg agatggctca cccccaaacg atatggatcg taatagggat       240
     cgcggcgcct actcttgaga gaaaaagaga atccccggat cgtggtttca cgtggcggtt       300
     tatgattggc cactttttgt ctgcatcagg atcatccgat gcatcgcacg ataatccgtt       360
     gagccgcgaa ttgatggttg aacctagatg aggtagtttt tgggtggaag ccctcaatca       420
     gttttgtgaa gtcgagcgag ctagactgaa gtgatttgaa gtttgctagt gccttgaagt       480
     tattgtggct tattataact taggtgatcc gtagttaaac ctattcagtg gatttagttt       540
     cccatattta ggtgagaaga taatttctct ggccagataa tatctcataa aataaaattg       600
     tgtagtttgc agaacacagg atatcagcgt acatatacga aaattagcct ctttaaattg       660
     tgtgcttagt aaaaaaaaag ctgtggtaag caaaatagcg attgaacatg attggtgtaa       720
     atcctaatat cgttgtcggg tagctttccc ttcaacgaag ggttttttct ttagttccca       780
     aaaaccatca agtgctacgc gtataagcct caccaccaag cgcctcgggc cgcatgcgcc       840
     tcagccagca acgctacgtg ctattcccat tgcccacgtg tatacgcctt ccgacgcctt       900
     cgtcacgctg acgatcctcg ctcacccgag ctttcgtcct tcggcgccag ggtacgctca       960
     agtggaacga ttggcgcgca agcccctagt ggacgccgtt ttccagcctg ctgtggtgca      1020
     acagcgactg ccgtcgctct tgactggaac agattcgtcg catcacacgg ttcacgcacg      1080
     aggagagcca acgcaacatt tggtcgtatc aaaagctggc gcgtgacacc gccggcaagc      1140
     aaacttgttg catccagtgc ggcttatcca tcgcacgacc aacgccggtg cgacacagtt      1200
     gaattcatcg ccagcacaca atttgttaaa aaaccgtaag tttaaaatta gatcctttga      1260
     gctcaaggta gggccctccc acacaaaatt gtaaactaat tgtaaaatca ccctataggc      1320
     atgaatagag tatcgcttcc tttacttaat tgattgtagc ttacacttgt ttcaatttag      1380
     agtttttatt cggagatcct tttttcattt caaaattcgt aggtgcttcg gttggggttg      1440
     tcggataaga ccgagtgttt gagccactag taaaactcgc ccttggacag agtctcatag      1500
     ccggacctgt gaaaagcgtc agcagtctcc ctaacccggg agtggcgctt aaactgctgt      1560
     acgttgtgtg cacaacatta gcgttaca                                         1588
//
ID   Gypsy-539_AA-LTR repbase;    DNA;    INV; 1268 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 25.10, Created)
DT   02-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-539_;
KW   Gypsy-539_AA-I; Gypsy-539_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1268
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1268
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3163-3163 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1268 BP; 349 A; 286 C; 280 G; 353 T; 0 other;
     tgtaacctgc gtacccacta ctaccgtcct cgcgtgtggt tctaaatgat gccacaaggt        60
     ctaccatatg aaatggaagt atagatccct taccatatgt aaatcactac acttacaaca       120
     tacacaacag aacacatcat ctggtcagcc gagttcaata gctgaccaca gttacaaaag       180
     agccaattct ccatgcctct ccagcaaaaa tatagaacac agatggtgag cacatagggc       240
     cgatcgttac gatcatatct ctaagagaat ccagcggtag atactctgta ctgataaact       300
     acccataaaa accctatcag taaccctcac cacatgccga tacagtctcg cagcatccca       360
     tctctcgatt agatcattcg tctctcgtta tcgccaccca ccgatgagat gtggtacacg       420
     aacatggact gagctgggtc atagagtcgt cgcaaaaaga tgtatccatc agtggtcagt       480
     taagtgttaa gcaggcaaga ggtagaatcc tcgttttgaa gcgtagagag cctgactgac       540
     ggtagccaag tagctatttt gtggcatttt aagagtggat gtgaaaatag atgtgcttca       600
     ttctggggta ttaagctgac tagtggtgag atagtgcaga atgtttaact ggattctttt       660
     ccgcagttca aagtatccac ccagtggaat aatttagttt gtgcgaacgg gaaaaatgat       720
     ggagtagtgt ggtagagatt actagagatc ggtaagatca gagaggatcg caatttctaa       780
     aaattcatcc caaaaattaa tttatcctgc gagtgatcta aagtgccctc aatatgtgtc       840
     catctaggcc tttcttttca ctccaaaacc catggatacg gtggctcagt gttggacctt       900
     cgcttctgtg catggcgtgg tcagcgatgg agatgccggc ttggcgccgg tggttaaccc       960
     ttgtctgtcc gggcagaccc gttttgtgca gccgccgagg gatacaccat tacactgacg      1020
     cccactccac actaggatta agtataaact aacatgtaag taataaacca tttactaatt      1080
     attaagcatg taaaatctct gcttttgatt tctccatggt gagacccgtg tagcttcttt      1140
     tttttggttc cactaaatcg aacctggttg ttagttggca gagttgatat gtgggagatc      1200
     agttcctctg ctacttcttt caaccgcttt gtctccgtct catgcggcct tcttatgggg      1260
     aggtgaca                                                               1268
//
ID   Gypsy-53_AA-I repbase;    DNA;    INV; 5358 BP.
XX
AC   AAGE02021081;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_AA_;
KW   Gypsy-53_AA-LTR; Gypsy-53_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5358
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021081; Positions   28216   22859.
XX
CC   Positions [2627-3127] - Reverse transcriptase
CC   Positions [4262-4732] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1049..5266
FT                 /product="Gypsy-53_AA-I_1p"
FT                 /translation="MSSSSIACTVEPYRRGNSFNDWYTRLKYFFKVNKVKD
FT                 EDKMAYFITLSGPVIFEEIKLLYPTGNFEEIPFDDLINKLKNRLDKIDPDL
FT                 VQRYKFSTRVQQPDETTEDFVLALKLQAEFCDFENFKEVAVLDRIIAGLRD
FT                 KNFRLKLLSEEKLKLASAEKIIATWEVAKANAGTAETSRDSPNMVAAIGNY
FT                 SGRESGMAMRKLAKVYGGINDYQREEVGGEASGSRGPVKNRLGYRPYGRTD
FT                 QTGRGRQNSGSAGRRGEMYARQRPDYSQMVCNYCGIKGHIKKKCFKLKNLH
FT                 RDAVNLVESYKPGPSANRHINELLSRMRTRDSEDDDSDTGDLECMLVASIN
FT                 KISNPCLIQVKIEGKYLEMEIDCGSSVSVISKRQYFALFDKPLQSYSNQLI
FT                 VVNGAKLKIAGETMVSVRINGLEKLMSLLVLDCENSFYPLFGRPWLDVFYS
FT                 DWRHFFSNSMTINSLQDESSENVVDKLKKKYSKVFEKNFSSPIQGFKAELV
FT                 MKDETPIFKKAYDVPYRLREQVADYLDKLENEKVITPIDTSQWASPIIIVM
FT                 KKNSDIRLVIDCKVSLNKLLVPNTYPLPTAQDIFANLAGCKFFCALDLEGA
FT                 YTQLELSKRSKRFVVINTMKGLYTYNRLPQGASSSASIFQQVMDKVLEGIE
FT                 NVTVYLDDVLIAGKTREECLKKLVIVLDRLTKANIKVNFDKCKFFVTKLTH
FT                 LGHLITDKGLLPCPDKILTIEKANAPKNESELKSFLGLINYYHKFIPHLSA
FT                 KLHYLYNLLKNNTKFSWDGNCQKAFEESKAALVNANILEFFDANKPIVVIS
FT                 DASSYGLGGLIAHVVDEMEKPISFTSFSLNSAQKKYPILHLEALALICTIK
FT                 KFHKYLYGKHFTIYTDHKPLVGIFGKEGKHSIYVTRLQRFILDLSIYDFDI
FT                 IYRPSHKLANADFCSRFPLQQGVPEELDTDVIKSINFGKHIPIDSKMIAEE
FT                 TKKDDFLHKIKWFMQNGWPERVEKRFVDVFANQHDLELIDDCLLYNDRVIV
FT                 PTIYQKQILKLLHGNHSGIVKMKQLARRMVYWFGINTDIENYVSKCDACNG
FT                 MSISSKPKESSKWMPTNKPFSRIHIDFFFFEHHTYLLIVDSFSKWIEIEHM
FT                 KQGTDCNKVLKKLVCFFARFGLPDVLVSDNGPPFNSHNFVNFLERQGIRVM
FT                 KSPPYNPASNGQAERLVRTVKEVLKCFLLEPEVAILDLEDQINLFLFNFRN
FT                 NNLSNDGRFPSEKIFCYKPKTVLDLINPKKHYKNNISEPQSDEETTTKNQC
FT                 GRIPRRPNDAIDELMTGDEVWYKNHNPQIHARWIKATFIKKYSHNTFQIRI
FT                 GSANVMAHRTQIKICKDTSWQRPNVLINLGGAESVSNEEQGASTVQQNESR
FT                 DKPKELPRGSKKRKHPVSEDEATEPRRSKRERKTNKSDDYFYS"
XX
SQ   Sequence 5358 BP; 1768 A; 901 C; 1155 G; 1534 T; 0 other;
     aagatataaa agtggatacg aggtagtagg ataaaacgcg tgcatagaaa gagaagttaa        60
     cctttacgtg cgagtgttag ttttctccat cgctggcgcc caagggtgga aaaggtcggc       120
     agagtccatt ttgacgtcgg tctggtgagg tcgaaacgct aagcgttctg tacgggcgac       180
     aaattttttt cgtatcaccg aggaagccta atctaaagcg actgaacatc ttaggctgaa       240
     gttttcgccg attcttcttg ggtaaggtaa agtgaagggt aaacgttacc tcgtgatttt       300
     ctcttgattt tacagccaaa gtaaaacaaa aaagagcgct tcagtagtgc tatatggtgt       360
     gaaagcattg tgtgacattt cctcataact cctcccctcc ccatcctgac taacaaagaa       420
     agaaatagct gtgagtgaaa gaaacccatt gtatattgaa aggtgcgaat agggtggact       480
     aaaatttgtg tgttcaccaa atctaagaag atttttttct cgtttttgaa acaacacttc       540
     gtcagttcct tttaataaga gagtttcttt ctttaatacg cagaagccag ccagatttta       600
     agtgctaaaa accgattgtc aagtgatttt atcacaaggc tcattggcgg tatcgacgac       660
     aaaactggtg gacgaatcag gaggagccaa atcccggaaa ataactaatc ggcaccgctg       720
     ctacgcccaa ttccggtcgg catttattcc ggttaaaacc aaggttggga ctttcttgtt       780
     cggcaaaggt cgcaagcggg caaaggccag gatgcaattg gtgagtcaga catttttttt       840
     cctttttcct cttttattat ttgttaatca ttacatcaaa agagcttttt gttcatttgt       900
     acattcaatt tgatagttat tgttgctttt gtttcttttt caaatttcat tctttgttcg       960
     gtagtccgga aacattgctc aattgactat ttattgcaaa tttcaatatt tagatttaca      1020
     gacagtaatt tatttctgct aaatcaatat gagttcttca agcattgcct gcactgtaga      1080
     gccttatcgt agaggcaaca gttttaatga ctggtacaca cgtctaaaat atttcttcaa      1140
     agttaataaa gtgaaagatg aagataagat ggcctacttt ataactctta gtggaccagt      1200
     catctttgag gagataaagc tcctttatcc cactggaaac tttgaggaaa ttccttttga      1260
     tgatttaatc aataaattga aaaatagatt agataaaatt gatccagatt tagtacaacg      1320
     ctataaattt agcaccaggg ttcaacagcc cgatgagact acagaagatt tcgtgctagc      1380
     actcaagttg caggcggaat tttgtgactt cgaaaatttt aaggaggtag cagttctcga      1440
     tcgcattatt gcgggactac gagacaaaaa ttttaggctg aaattgctta gtgaagaaaa      1500
     gttgaaatta gcttcggctg aaaaaattat tgctacatgg gaggtcgcga aagcgaatgc      1560
     gggaactgct gaaacttcta gggattctcc aaatatggtg gctgcaatag gaaattattc      1620
     cggacgagag agtggaatgg ctatgaggaa gctcgcaaag gtctatggtg gaattaatga      1680
     ttaccagaga gaagaggtag gaggtgaggc cagcggtagt cgtgggccag tcaagaatcg      1740
     attagggtac aggccatatg gaaggacaga tcaaacaggc agaggaagac agaattctgg      1800
     atcagcaggc aggagaggag aaatgtatgc aagacaacga ccagactatt ctcagatggt      1860
     gtgcaattac tgtggcatta aaggccacat aaagaaaaaa tgcttcaaac taaaaaacct      1920
     tcatcgagat gcggtaaatt tagtggagtc ctacaagcct gggccttcgg ccaacaggca      1980
     catcaacgag ttgctcagca gaatgcggac gcgggattcg gaagatgatg acagcgatac      2040
     aggtgatttg gaatgcatgt tggtggcgtc cataaataaa attagtaatc cttgtttaat      2100
     acaagtgaaa attgagggta aataccttga aatggaaatc gactgtggtt cttccgtttc      2160
     ggtaataagc aaaaggcagt actttgcatt atttgacaaa cctttacaaa gttatagcaa      2220
     tcaattgatt gtcgttaatg gggctaagct taaaattgct ggagagacga tggtttcggt      2280
     gagaattaat ggactagaaa agctcatgag tctgttggtt cttgattgtg aaaattcctt      2340
     ctatcctttg ttcggccggc cttggctaga tgtcttttat agtgattgga ggcatttttt      2400
     ttcaaactct atgactatta acagtttaca agatgagtcc agcgaaaatg ttgttgataa      2460
     attgaaaaaa aagtatagca aggtgttcga aaaaaatttt tctagcccta ttcagggatt      2520
     taaggcggaa cttgtgatga aagatgaaac gcccattttc aaaaaggcgt atgatgttcc      2580
     gtacagactg agagaacaag tggcagatta tcttgataaa ctggaaaacg aaaaggttat      2640
     aacaccgatt gatacaagcc aatgggcttc acctattatc atagtcatga agaaaaacag      2700
     tgatatccgt ttggtaatag attgtaaagt atcactcaat aaattattgg ttcctaacac      2760
     atatcctttg cctactgccc aagacatttt tgctaatttg gcaggttgta agtttttctg      2820
     tgcccttgat ttggaaggag cttatactca gttggaactc tctaagagat ccaaacgatt      2880
     tgtagtgatc aatacaatga aagggctgta cacttacaat agactgccac aaggggcttc      2940
     atcaagcgca tccattttcc aacaggtgat ggacaaagtg ttagagggga ttgagaacgt      3000
     tacagtttat ctggatgacg tattaattgc cgggaaaacc cgagaagagt gtttaaaaaa      3060
     acttgtgatt gttttggata ggttaactaa agctaatata aaagtgaatt tcgataaatg      3120
     caaatttttt gtgaccaaac tcacgcattt aggacatttg attacggaca aagggttatt      3180
     gccttgccca gataaaattt tgacgataga gaaagctaat gctccgaaaa atgagtctga      3240
     gcttaagtca ttcttaggtt tgataaatta ctatcacaaa tttattccgc atttatcagc      3300
     taaattgcac tatttataca atttacttaa aaacaataca aaatttagct gggatggcaa      3360
     ctgccaaaaa gccttcgaag aaagtaaagc tgccctggta aatgcaaaca ttttagaatt      3420
     ttttgacgcc aataaaccaa ttgtagttat ttctgacgct tctagttatg gtttaggagg      3480
     acttatagct catgttgtgg acgaaatgga aaaaccaatt agtttcacat ccttctcgtt      3540
     aaactcggcc caaaagaaat atcctatatt acatttggaa gcattagctc taatatgtac      3600
     tataaaaaaa tttcataaat atttatatgg aaaacatttt acaatctaca cggaccacaa      3660
     gcctctagtt ggaatttttg gaaaagaggg taaacattct atttatgtaa ctaggctcca      3720
     gagatttatt ttagatttgt ctatttatga tttcgatata atatacagac catcacataa      3780
     actagcaaat gcagactttt gttctagatt ccctctacag cagggggtcc ccgaggagtt      3840
     agacacagat gtgatcaaaa gcataaattt cggtaaacat atacctattg attcaaaaat      3900
     gattgcagaa gaaactaaaa aggatgattt cttgcacaaa attaaatggt ttatgcaaaa      3960
     cggttggcct gaaagagtgg aaaaacgttt tgtggatgta tttgcaaatc aacacgattt      4020
     agaactgatc gatgattgtt tgctttataa cgacagagta attgtgccca caatttatca      4080
     aaaacaaata ctaaagctgt tacatggcaa tcactctggt atagtgaaga tgaagcagtt      4140
     agcacgaagg atggtttatt ggtttggcat taacacagac atagaaaatt atgtgagtaa      4200
     atgtgatgca tgcaacggca tgtcaatttc gagcaaacca aaggagtctt ccaaatggat      4260
     gcctacaaat aaaccattta gcagaatcca tatagatttc ttcttttttg agcaccatac      4320
     ataccttttg atagtagata gcttctccaa atggattgag attgaacata tgaaacaggg      4380
     aacggattgt aacaaagtgt tgaagaagtt agtgtgcttt ttcgcaaggt ttggtttgcc      4440
     agatgtttta gtctccgata atggacctcc tttcaattcc cataattttg taaacttttt      4500
     agaaaggcaa ggtataaggg ttatgaaaag tccaccttat aacccagcaa gtaatggaca      4560
     agcggaaaga ttagttagaa cagttaaaga ggttctaaaa tgtttcttat tggagccaga      4620
     agtggcaatt ttggacctgg aagaccagat aaatctgttt ttgttcaact ttagaaataa      4680
     taacttatct aacgacggaa ggtttccttc tgagaagata ttttgctata agccgaaaac      4740
     agtgttggac cttatcaatc caaagaaaca ttacaagaat aacatttcgg aacctcagtc      4800
     ggatgaagag accactacaa agaatcagtg cgggagaatc ccgaggcgtc caaatgatgc      4860
     aattgatgag ctgatgacag gggacgaggt gtggtataaa aaccacaatc ctcaaattca      4920
     cgcaagatgg ataaaggcaa ccttcattaa aaagtattct cacaatactt tccagatacg      4980
     cattggaagc gccaacgtaa tggctcatcg gacgcagatc aagatctgta aggatacatc      5040
     ctggcaaagg ccaaacgtcc tgatcaactt aggtggagca gaaagtgtgt caaacgaaga      5100
     gcagggggca tcaaccgtgc aacaaaatga atctcgagac aaacctaagg agcttcccag      5160
     gggaagtaag aaaaggaaac atcctgtttc tgaagatgaa gcaacggagc ccagaagatc      5220
     aaagcgagaa cgaaaaacaa acaaaagtga tgattatttc tattcatgat taagataccg      5280
     taatttcgga ttaggttaag tgttgaatta gttttcattc tgaagttgtg caatacactt      5340
     aaagggggaa ggaactgt                                                    5358
//
ID   Gypsy-53_AA-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   AAGE02021081;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_AA_;
KW   Gypsy-53_AA-I; Gypsy-53_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-242
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021081; Positions   22858   22617.
XX
SQ   Sequence 242 BP; 81 A; 51 C; 41 G; 69 T; 0 other;
     tgtgtcctta tctgaattat cctattcacc aaatgctata gaaccccatg ttcgatgttt        60
     cgttaggaga ataagccctt ttgggttttc ggtttaaacc tgttccacaa cggaacggtc       120
     gaaaacagat ccaaaaagaa acaaaactaa aaatatacga ggcgaaggtc tcattcgatt       180
     atcggaattc tacatctaca cttcactaaa gcaatcacgg tcttgctata aattagagta       240
     ca                                                                      242
//
ID   Gypsy-53_AnFu-I repbase;    DNA;    INV; 5944 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5944
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2937-2937 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. ORFs are broken.
XX
SQ   Sequence 5944 BP; 2218 A; 1105 C; 1018 G; 1603 T; 0 other;
     ggcgcagccg gtaggattta gctagtggaa aacaggtaaa aacagtgcaa aaaaagattt        60
     cagtttaatt cacattaaat tcagtgaaac agtgaatctt tgtgtaagtg tacccggaat       120
     ccgcgtgtgt tttaaatagt gcgtgatttc atctccgagc gatcttcaaa gctcgggtga       180
     cttgtggtgc cgccgccctg taaccacgtg ctttctaaag aatcttttgt gtgtggtcat       240
     tgacctaagg acgaaagtta aggtgtttcg cgttggaaat agatctttgc gcactactag       300
     atagacgcaa aatctgtaca aaaaaaaaat tatttttttg ttattcaaca cgaacacatt       360
     ttttttgcag gctgattgca gaacagagag cgttcgagcg tatttttttt tctcgaaaca       420
     gatttgtgcg cactaccaga tagacgcaaa atcttaaata cagtgcttct tgttagtttg       480
     cgttttgttt tcgctttgaa atttcatgag tgaccttcct gaaattttat ttgctaggcg       540
     tgatcccgta agcgaggaag aatacagtgg aagtgtaaac tctcttgact caggcgactt       600
     agcgcatatt ccgatagcga attttgatct cgatctagga gcaatgtccc ttgaagaatc       660
     acaaccgcag acacaagcgg caaatgatgt gttatcgcaa ttgatatcac aggttagcag       720
     attaaccgaa aatattcaac tagtgtctgc tagacaggaa tcgtacgagg ttatgttaca       780
     aaggttatcg aaccctgtaa gcacgtgttc tcaacaaacg cttacggtgc ctgttcaacc       840
     gtcacatata aatggtgatg tttttcgtat tcctgacccg attaaatcaa ttcctgccta       900
     tgatggcagt cgcaagcaat tgcaatcttg gataacagtg gtcgaagata cactaaaaat       960
     atttgagaat gtcgttagta gccaggtgta cggaatttac gtacaatcaa ttttgaacaa      1020
     aattgtcgga aatgctaaag atgcgctctg tcttgcaggg aatccattac atttcgatga      1080
     tgtaaaaaaa gtgcttatag aagcttttgg agatcgtcaa gagcttgcca cctataaagc      1140
     tcagctttgg tctaacaaac aaagcgatga aatgaccatt cacgcgtacc ataaaaagac      1200
     aaaggatatt atgcataata ttaaaacaat tgcgaggcaa aacaatttat atagtgagca      1260
     ttggatggcg atttctaaat ttatagacga agatgtgtta gctgcattca tcgccgggct      1320
     caaacatccg tattttggct acgcccaagc agcaaaaccg gataatcttg agagtgcata      1380
     tgcattcctt tgtaaattta cagcaaatga gaaaatttcc tctcatctaa cccagacaaa      1440
     atatcaaaaa ccaggtgcaa gtaaaataca cagtttttca acaaatgcag acacaaaaaa      1500
     attatactca gagtcgcggg gcacaggcca aatacattct caaattaagc caatagaagg      1560
     aaatcgatat aaagctccga ccgagaaaat ggacgttgat ccgactgtta gaagtagatt      1620
     aacaatcaat aaaaatgttg tcaacaataa tgaaatacct tcacatgaaa ccgatgtttc      1680
     agaaggcgaa gaaacagaaa ttttggcaaa tttttgggaa atctcaaagg caaccaatcc      1740
     aacttagact acctcccgta cataaactgt ataaattcaa aatcaggtga cagtttaaaa      1800
     cttttaatcg acactggctc aaataagaat attcttagac caggtatact tccggatcat      1860
     ttatgtattc caataaagaa cacgtgtgta aagaacataa ctggcgagca tcgtgtccat      1920
     aataagggtc atattaattt actcggtttt ggaataccaa aacaaacata ctacttagta      1980
     aattttcacg attttttcga cggaattctt ggttccaatt tttttgcaca aaataagacc      2040
     ataattgatt ataaaaaaga agttattatt ataaacgaaa ttattttccc gttcattaaa      2100
     tactatccat cgaaaaaagt atttaatcat ttcattacaa ttaatacaca aaaagatgga      2160
     gattggttag ttccatgttt tcaaactctt tacaaagatt gcattattaa accaggttta      2220
     tatagagcag aaaacggcaa atcaaccata aatattctca gttttcacca aaaacaccca      2280
     aacgatatga gaacgtttga tttaaaagta aacaatttcg aaacaattaa acctattact      2340
     atacggaatt gtgaaggatt agataaaaaa atattgaatc attaatccga ctagaacatc      2400
     tttcacaaga agaaaaagaa aagttacttc acacaattat tcaaaactct caagtgctac      2460
     ttaaagaagg cgagaagctt tcttccacta gtgttataaa gcacaaaata gttactaaag      2520
     ataacgaacc aacgtattca aaatcataca gatttcctca acattttaaa gcagatgtag      2580
     agaaacaaat tcaggaaatg ttagacaatg aaattatcgt ccactctagc agtccatatt      2640
     cgtcaccaat ttgggtggta cctaaaaaaa cagacgcctc agggagaaaa aagattagag      2700
     tcgttataga ctatcgaaaa cttaacgaga agacagtaag cgatcgtttt cctattccac      2760
     aaattgaaga gatcctcgat aatttaggaa agtcaacata cttcactact ttagatttga      2820
     aatctggctt ccatcagatc caaatggatc cagcatatca ggaaaaaaca gctttttcga      2880
     caggacaggg gcattttgaa tttaccagaa tgccattcgg cctaaaaaat gcacctgcta      2940
     ctttccaaag aatgatgaac catattctaa ctggcctcat tggatctatt tgtttcgttt      3000
     atttagacga tattattgtg actggcgata atctatcttc acatttgaaa aatttagata      3060
     gagttcttaa acgattagca aactttaatt tgaaaattca gctggacaag tgcgaattcc      3120
     ttaaaagaga aactcatttt ctaggccata ttataagttc agatggtgtc aaaccaaatc      3180
     ccgaaataat agaaaaaatc tcaaattgga aattaccaac aacgcaaaaa gaacttaaac      3240
     aatttttagg gttaactgga tattatcgaa gattcatacg agattatgca aaaatcacta      3300
     aacccctatc caactgtcta aagaaagatt ccattattaa cattgaaaat gaactgtatc      3360
     ttaaagcgtt tcaagaacta aaagaaatta ttatctcaga tcaagtgtta gcatacccca      3420
     acttcaattt accattcatc ctgacaactg atgcgagcaa ccatgcgcta ggtgcagttt      3480
     tatcgcaaat tcaagaaaac aaagagagac ctattgcgtt cagtagcaga accctaaaca      3540
     aaacagaaat taactactca actaccgaga aagaagcgct tgccataatc tgggctatac      3600
     gaaaacacag accatacctc tatgggaata gattcaccct cgtgaccgat cataagccgt      3660
     tagtattcat aaaaacatca tttaagaatt caaaaatact caactggcga ttagagttag      3720
     aagattacga atacgacgta aaatacaggc aaggaaaaac taacgttgta gctgatgctt      3780
     tgagtcgtat accacaagaa gtcaacgcaa acgaaacatt cccaaacgtt cctagtagaa      3840
     atagggtctc gtcgacaact tccaataatg gggtctatga taccttaagt tagaaagcta      3900
     aaatttttag cctggatctg tcaaaacttc gagcagaatc gagcggaaat tgttgacagg      3960
     taatatcatc atgcaaggat tcctcaagga cctagcattt tgacataaag aattacatta      4020
     ggctgcagtt ttgtagaagc gcgttttgac gaaacaggaa ttacagcgtc gaaatgtagt      4080
     tcgaaataaa ggcatagcac aagtaaaact ttgtattatt tttcataaaa agctgaacat      4140
     aattaaactc atgtaatttc attgttgtat taaatcctaa ttcaatcatc attcaaccga      4200
     atcaaatatg gcctaacctg tttcagacct gctagaaaaa tgccttgttt tgacatttgt      4260
     cgagcagctg atcgaaacta acattagaaa gattttctaa tcgaaatacg caggcttatt      4320
     ttgctgagcg gtttgtatgg aaaacatgca gcaaataagc cgcgaaacgt caaagtctat      4380
     ataaaaaaac tagtggaagg tatcatagac cccaatgaaa gaagcgactc ctgcaataca      4440
     gtgcattctg ctgacgactc aaaggactat ttcgtccaca tatcaaacag atcaatcaat      4500
     tactacagaa atcaattaat cttcaaaatc gcaagcacag acccaactat tgtaaaaaca      4560
     aatccattcc caaatttcaa tagaacaatt gttacaaaac gcagttttga cacggaagat      4620
     atgaaacact acttaagcaa attccataat ggtaggcaaa ctgcaattct tgtcccagaa      4680
     gatctgatac agttgttaca agctactttc aaggataatt tttcaatcaa aggtcatttt      4740
     gtcatggcaa aaacaatagt cgaagatgta ccagataccg taaaacaaga tcttatcata      4800
     tccagagaac atgaaagagc gcatcgtgga attttggagg ttgaatgtaa acttaaacgt      4860
     gcttacttct ttccaaacat gcaaagacgg ataaagcatt tcatcaacag ctgtgaaatc      4920
     tgcaatgttc ataaatatga acgcaaacca tttaacatca aaatatcccc tcgaccaata      4980
     acaagcaaac cattagaacg gatacacatg gatatttaca tcataaacca tacaagcttc      5040
     ttgtccttaa tcgattcatt tacgaaacat ttgcaaatgt tacacataaa aaataagaac      5100
     attattcagg tacaaagaaa gctatcgcaa tattttgcac aatatggtgt acccaacgaa      5160
     ataataacgg atcacgaaac aacatttcga tcagtacaat tgaaaaatta tttaggatca      5220
     ttaggtgtgg cattgaaata cgcttcatgt tcggaatcta atgggcagat agaaaaaacg      5280
     cattgcacca tcactgaaat ttataacaca aacaaacaca aacacgaagg ctgtgacgta      5340
     aaatcaaaaa taaggattgc agtagcgtta tacaacgata caattcattc agccacaaag      5400
     tataccccta atgaactaat gttcaatcaa acaaaccacc acaacccagc tcaaatacta      5460
     gaaacagcaa accaactgtt tagcgatgcg aaacaaaatt tagaaatagc tacaaaacgg      5520
     caattataca aaaacgatca aagagaaaat ccgcctattg taaatgaagc tacaaatgtg      5580
     tttgtaaaac caaacatcag gacaaaaacg caagcaagag caaacaaaac aacagctaat      5640
     aacgttaagg acagaacttt tgaaaataat agaggagtaa aacgtcacaa aaataagatt      5700
     aagcgactga aaaggtaaag aactcgaata gctcggaatt atggaatctt ctcaggataa      5760
     attgaaatta atacaaataa tttttgctag gtttaaattg ttagggacta tgcagggcta      5820
     gtattaagca taactattat aacgtaattt gaaaaaaaaa atgaactaaa atgaatgtaa      5880
     tcataaggta tttgcatagc cgcaccacat cagacgagga cgtcttcaca cttacccccg      5940
     gagg                                                                   5944
//
ID   Gypsy-53_AnFu-LTR repbase;    DNA;    INV; 180 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-180
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2865-2865 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs, often in (TA)n
CC   microsatellites.
XX
SQ   Sequence 180 BP; 55 A; 47 C; 36 G; 42 T; 0 other;
     agttatgtct caacatcaag aacaccacca cacaatataa acgcgttgcg tagtacatga        60
     caatgcgtgt catgtaagag cgacgcatcg atgcatgtaa gagcgtcgca tcgaagcggt       120
     cgctctcttc tgttcgaacc atcagccaat aaacaagctt tgcaagcccg actcattatt       180
//
ID   Gypsy-53_CQ-I repbase;    DNA;    INV; 3893 BP.
XX
AC   AAWU01017349;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_CQ_;
KW   Gypsy-53_CQ-LTR; Gypsy-53_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3893
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 485-485 (2011).
XX
DR   GenBank; AAWU01017349; Positions   44735   40843.
XX
CC   Positions [2996-3511] - Integrase core
CC   'ACTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           968..3877
FT                 /product="Gypsy-53_CQ-I_1p"
FT                 /translation="MKGAAAFDLHAANGSRIKVYDKRVLTTDLGLRRRFNW
FT                 LFLVADVGMAIIGADFLAAFGIVVDLKHRRLIDGLTKLSSTGGLTTASVHS
FT                 VTVVATDHPFRDLLVEFRDVTLPTTMKSAAQHDVTHHIQTKGPPVSSKCRR
FT                 LAPDKLEAARKEFQVMSELGICRPSSSSWASPLHCVQKKNGQWRFVGDYRG
FT                 LNQVTVPDRYPVPHIHDLLNAFQGKSIFTTLDLERAYHQIPVEEDDIPKTA
FT                 VITPFGLFEFTRMQFGLCNASQTFQRFMHKVFADMEYVVVFVDDICIASAS
FT                 PDEHYMHVRKVFERLQMYGLVINVPKSHFAQSTVEFLGYTVSGDGILPLPD
FT                 RVKAVTEFKLPSTVKQLRRFLALVNCYKRFLPHATDTQSHLRDLIPGNKKN
FT                 DSRKLEWTDNAREAFEKCKQSLATATLLHYPDSTKPLSLLIDASNTAAGAV
FT                 LQQFADGQWNPLGFYSEKFSPSQQRYSTFGRELTAMKMAVQYFRHMLEGRR
FT                 FVIFTDHKPLTTALTSSPNSRLPHEDRYLRYISEFTNDIRHISGQHNVVAD
FT                 ALSRIEAVAAPSPIDYGQIVADQTNDSELQRLLSSSTGLKIELRQTPLTPK
FT                 PLYCDTSQGKVRPYIPPQHRQLVLQHIHGLAHPGIRSTRRMVTDRFVWTHI
FT                 NKDVKHYVQSCVQCQRSKIHRHTKAPLEKFAPPNSRFRHIHIDLVGPLPPC
FT                 NGNRYLLTAIDRYTRWPEVMPLPDMTAETVARALCEMWICRFGVPETIATD
FT                 QGRQFESELFRELSRIIGCKHIRTTAYHPQSNGIIERFHRHLKSSIMAVDS
FT                 KHWCDKLPLIMLGLRAALREDFGCSAAELVYGQTLRLPGEFLEQQTNNEDR
FT                 TEFAKQLRNAMGKLKPVDPDHHAKPAVFVNRRLEKCSHVFVRIDAVKRPLV
FT                 QPYEGPFKVVARDKKHMDVEINGKTQRISIDRVKPAYTCDPAIDEHPRSDG
FT                 KTVVTPSGHRVRFLV"
XX
SQ   Sequence 3893 BP; 945 A; 1115 C; 1041 G; 792 T; 0 other;
     attggtgacc ccgacgcgta aaagcggaag tttcgacaat gcccgacccc gatcctaccg        60
     tcgtcgaaaa cgcagcagtg gccgccagcg tggccgtaag acttccggat ttctggaaga       120
     acgatccggg catgtggttc gcacaggcgg aggcgcagtt cgagttggcc aacgtagtgc       180
     gggaccacac caagttcaat cacattgtgg ccaagattga ccagacggtg atttgtcacg       240
     tcgccgacat tattacgaac ccgccggaag ctaacaaata cgcagcggta aaggagcgcc       300
     tgatttctcg gttccaagtt tcgcctcagg gcagattgga acgccttctg aatgcctgcg       360
     atctggggga catgcggccg acccatctgc tcgcgaaaat gatggaactt tcggcaggtc       420
     tgaaaatctc cgacgacctg ctcaagatgc tgttccttca gcgactcccg ccggacgtca       480
     agaacattct cacaatcagc gacgggacga cggtcggcaa gctggcagaa atggcggaca       540
     aaatgatgga ttcctcaacg cgtcacgttt ccgccgcgtc cagcgctccc acgacgaagc       600
     ccgaagaccc cgatctgcgc tgccaaattg ctgctctcac cgaagaaatt cgtaacctca       660
     aagctgatcg cggcagaagc ttctcccgca gccgttcagc agcgcgatcc agttcccgga       720
     gcacgtatgg agacggagac gaaatctgct ggttccaccg gaagtacggc ggccgtgctc       780
     tgaggtgtcg ggacccctgc aagttccaga atcaaaaaaa ctagttccgc gttcaccaca       840
     gtcggcggag gtggacggaa gtactcaaag ccgccgaatt ttgttgtatg atcgcacaag       900
     caacacacga ttcctgattg acacaggctc ggacgtctcc ttgattccgg ccactaacag       960
     agaccggatg aaaggagcag cggcattcga tctacacgcg gccaacggct ctcgtatcaa      1020
     ggtgtacgac aagcgcgtgc tgactaccga tttgggactg cgacgcaggt tcaactggct      1080
     cttcctggtc gctgacgttg gaatggctat aatcggcgcg gatttcctag cggccttcgg      1140
     aatcgtcgtt gacctgaaac accgccgtct gatcgacgga ctcaccaaac tgtcgtctac      1200
     cggcggtcta acaaccgcaa gcgtccacag cgtaacggtc gtggccacgg atcatccgtt      1260
     tcgagacctg ctcgtcgagt tccgtgacgt cacccttccg acgaccatga aatctgctgc      1320
     gcaacacgac gtcacgcacc acattcaaac gaagggtcct ccggtgtcga gcaaatgtcg      1380
     acgtttagca ccagataagc tggaagccgc taggaaggag tttcaggtca tgagtgaact      1440
     cgggatttgt cgtccgtcca gcagcagctg ggcgagccct ctccactgcg tgcagaagaa      1500
     gaacggccaa tggagatttg ttggagacta ccgcggcctg aaccaggtga ccgtccctga      1560
     tcgctaccct gtcccgcata ttcacgatct actgaacgca ttccagggga agtcgatctt      1620
     caccacgctc gatctcgaaa gggcttatca tcagatcccg gttgaggagg acgacattcc      1680
     aaaaacggcg gtgattactc catttgggct cttcgagttc acccgaatgc agttcggctt      1740
     gtgcaacgcc agtcagacct tccaaaggtt tatgcacaag gtcttcgcgg acatggagta      1800
     cgtcgtagtc ttcgtagatg acatctgcat tgcttcggct tctcccgacg agcactacat      1860
     gcacgtgcgc aaagtgttcg agcgattgca gatgtacggg ctggtcatca acgttccgaa      1920
     gagccacttc gcgcaaagca ccgtggaatt cttgggctac accgtcagcg gtgacggtat      1980
     ccttccactg cccgatcgag ttaaagctgt taccgagttc aagttgccgt caaccgtcaa      2040
     gcagcttcgt cgatttctgg ccctggttaa ctgttacaaa aggttcctgc cgcacgcgac      2100
     agacacgcag tctcacctgc gagatttgat accgggcaac aagaagaacg attcgaggaa      2160
     gctggagtgg accgacaatg ctagggaagc attcgaaaag tgcaaacagt cgttggccac      2220
     cgcgactctt ctgcactatc cggattcgac gaagcctctg agcctgctga tcgatgcgtc      2280
     gaatacagca gctggagcag tcctacagca gttcgccgac ggccaatgga atcccttagg      2340
     gttctactcc gagaagttca gtccatccca gcagaggtac tcaacgtttg gacgggagct      2400
     cacggcgatg aaaatggcgg tgcaatattt ccggcacatg ctggagggga ggcggttcgt      2460
     catcttcaca gaccacaaac cactgaccac tgctctgaca tccagtccaa acagtaggct      2520
     cccccacgaa gatcgctact tgcggtacat ctcggagttc accaacgaca tccggcatat      2580
     cagcggccaa cacaatgtcg tcgcggacgc gttgtcccgg atcgaagccg tagcagctcc      2640
     atcgccgatt gattacggac agatcgtagc agatcagaca aacgacagcg aactgcagcg      2700
     cctactgagc tcgtcgacag gactgaaaat tgagctccgt caaacaccat taacgccgaa      2760
     gccactctac tgcgacactt cacaaggtaa ggtcaggccc tacataccac cacaacaccg      2820
     ccaactggtg ctccagcaca tccatggcct ggcgcatccg ggtatacgat cgactcggcg      2880
     gatggttacg gaccgcttcg tgtggaccca catcaacaag gacgtcaaac actacgtcca      2940
     atcctgtgtg cagtgtcagc gatccaagat ccatcggcat accaaggccc cgctggaaaa      3000
     gtttgctccc cctaacagcc ggttccgcca catccacatc gatcttgttg gaccgttgcc      3060
     gccgtgcaat ggtaatcggt atctgctaac agctattgat cgatataccc gttggcccga      3120
     agtaatgccg ttacccgaca tgacggcgga aactgtggca cgtgcgctgt gcgaaatgtg      3180
     gatttgtcgg tttggagttc cggaaaccat cgctacggac caaggcaggc agtttgagtc      3240
     agaactcttt cgggagctct ccaggatcat cggttgcaag cacatcagga cgacagctta      3300
     ccacccacag tcgaacggca tcatcgagcg cttccaccgg catctgaaat cgtccataat      3360
     ggcggtggac tccaagcact ggtgcgacaa gctcccgttg atcatgcttg gtttgcgggc      3420
     cgcgctccga gaggactttg gatgctctgc ggcggagttg gtttacggac aaactctacg      3480
     attgcctggc gagtttcttg agcagcaaac caacaacgaa gaccggacgg agttcgctaa      3540
     gcagctccgg aatgcgatgg gtaagctgaa accggttgat ccagatcacc acgccaagcc      3600
     agctgttttc gtcaaccgcc ggctcgagaa gtgctctcac gtcttcgtga gaattgatgc      3660
     agtgaagaga ccgttggtgc agccttacga gggaccgttc aaggtggttg ctcgtgacaa      3720
     gaagcacatg gacgtcgaaa ttaacgggaa aacacaacga atttccatcg atcgcgtcaa      3780
     accggcctac acctgcgacc cagccattga cgaacatccc agaagcgacg gaaaaactgt      3840
     agttacacca tctgggcata gagtaagatt tctggtgtaa ctggggggga cta             3893
//
ID   Gypsy-53_CQ-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   AAWU01017349;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_CQ_;
KW   Gypsy-53_CQ-I; Gypsy-53_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-161
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 486-486 (2011).
XX
DR   GenBank; AAWU01017349; Positions   40842   40682.
XX
SQ   Sequence 161 BP; 49 A; 46 C; 31 G; 35 T; 0 other;
     tgtggtggtg caatcaatcg cattggtgca ccccccgtta aatagcacac gcatacactc        60
     acacccgcga agagagaaaa accacatgaa taaaacacac tgttttctaa cctcgaacga       120
     gacggttcgt ttttattcac gagtcccgaa tcggtcccac a                           161
//
ID   Gypsy-53_DEl-I repbase;    DNA;    INV; 7180 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_DEl-I;
KW   errantivirus.
XX
NM   Gypsy-53_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7180
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 495-495 (2012).
XX
RN   [2]
RP   1-7180
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (18-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           798..2303
FT                 /product="Gypsy-53_DEl-I_1p"
FT                 /translation="MANRHNLIRPPVIDIQPQELQPEQIQNNQLNQVEQHQ
FT                 ANLVQQQRQIHRQVLHQEHRENMAAQELQEAVRNIIAQQLPILLQQTQNTG
FT                 FDFAQVPNQEISYENRANLEGLDRVPDVVKSLREFSGNPTEFSSWKKGVDR
FT                 VLKTYEHTVGTAKYFGILHTIRNKITGNADTALESYNTPLNWNAISKCLTL
FT                 HYADKRDLGTLEYQMTTLCQGAHQSVEEFHQSVYKHLSLILNKVGCMELGM
FT                 EAEQLMTKMYRDKALDTFVRGLRGDLSRLLGMKEPTDLPSALHLCLKLENQ
FT                 AFRANHAVNRGQQSGFRNVPSQNIPHLQPTRSQPNRPQWSFPINNQYQNPL
FT                 VPPRQNNMFNQPRPQFYNNNQTPQIPQYTAARPSGNFPPARPLAAKPQPRP
FT                 EPMDIDRTMQSKNINYMNKPIRFETGKRPPMPLNEAAKKTRNFNIQAAPDT
FT                 SSKVEDETQSLDEYNETVKSQDESQSEYPESLTEYSESIDQADQEYPYDYT
FT                 YLHFLE"
FT   CDS           2243..5431
FT                 /product="Gypsy-53_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IHRPSRSGIPIRLYLPSFFRITNSSLPYFECKLRSGE
FT                 ILKILIDTGSNNNYILPKFVKNPIENKFPFDAISVGGNIKITHHKTANLFN
FT                 DPNTIIKFFLLPTLKTFDAILGNDSLKNLGAIINTNTKTMHLKNGKIINIK
FT                 EKIFKAVNLIIPRTDHLTGTQKSDLKQLIQKYPNLFAEPNEKLTYTTNVKA
FT                 EIRTNTDTPVYSKFYQYPMALKDEIDRQIKELLEANIIRPSRSPYNSPVWI
FT                 VPKKLDASNVKKYRMVIDYRKLNSVTIADRYPIPDINSVLAQLGNNKMFSV
FT                 LDLKSGFHQILLKESDIEKTAFSVNNGKFEFTRLPFGLKNAPSIFQRALDD
FT                 ILREHIGKICYIYIDDIIVFSPDAQSHSKNLDTIFETLNNANIKCQLDKCE
FT                 FFKSKVEFLGFVISDKGIETNPTKVQAIANYPIPKNVKELRSFLGLSGYYR
FT                 RFIMGYAALAKPLTTLLRGEDGRISKKASSKKSIHFNSEAIQAFNKLKSTL
FT                 ISEDVILQYPNFNEEFVLTTDASDHAIGAVLSQKDRPIAFISRTLSQTEEN
FT                 YETAKKEMLAISWAVKTLRGYLYGGTKVKIYTDHEPLTHDCNWKGGIAIKR
FT                 WKSYLDEYNKELLYKPGKENIVADALSRIPKSNQINSLTATQHSAQSSGHN
FT                 LIPSVEVPINAFKNQIFIYKENPPDYKFTIPFPTFHRHVITRPNFQNIDLI
FT                 EILKKHLNPSILNGIFTSEEIMGEIQRIYPEHFGSIKIRFTQNKVEDLTEE
FT                 IKQEELILETHNRAHRNAEENKNQLAEKYYFPKMKQKITTLVKQCRICKEG
FT                 KYDRHPPNPEIKETPIPEYPGHIIHIDIFSTEKKLVLTAIDKFSKLAQAKI
FT                 IKSKSTEDIKKQLHEIIFYYGVPKFVVMDNEKAFNSASITFMMRDQLNITI
FT                 FKAPPYKSSVNGQIERFHSTLSEIMRCLKTKQIYNTFEELLDRAIYEYNYT
FT                 IHSVTKKRPLEIFFGRNINTDPEQYEKSRQDNIEKLKQKQLIDLENHNKER
FT                 KPIRSYLPGQEIFVKQNTRLGSKLSPRFKKEIVKENRNTTILTEAGRVVHK
FT                 SNIKGI"
FT   CDS           5603..7141
FT                 /product="Gypsy-53_DEl-I_3p"
FT                 /note="env."
FT                 /translation="MRHFFNYRMLFLITLIPMAIATTEITNYTDAHTITIH
FT                 KGIGKLQISTIKLIHVINLKQIETELLQIREHTMNRLKNSLHYHTLTHEII
FT                 QSLSALSTLTLTTKSRQARSINIIGSAWKYIAGNPDHEDLVMIESNLNNLI
FT                 KNNNDQIIINNQLQDRINNLTTTSNMLANSIQKDRFFNNDIASSLQTQVRL
FT                 IKEEIGNIKFAIQWAKINVINTLLLNEPELNEINKISQKNNITSFSIEETL
FT                 EFVDVSVLHNKTTIIYLIKIPELEPTNYENLLLKPVIRNQLIIHLETNELF
FT                 VSNNVMLGLPHDCKTSNYVKICKKRKIVNLSNSKCISKLAQGKESLCDYSN
FT                 SDHIEPIEEIDDGILLLNDFNGSLNSNNISHQLRGTFMITFLNETININGK
FT                 NFTNKEKIIMKPEIPRIQITPLQAQRIQILSLEALEALHIKNRKHLQTLQN
FT                 DSTINRITTVTLICAIVLTLIVLINCVHRKEKVILHVQEPTPQVLNNKTNT
FT                 ISIPKRIIPEFNNIPYF"
XX
SQ   Sequence 7180 BP; 2890 A; 1359 C; 1055 G; 1876 T; 0 other;
     ggcgcccgaa cagggaccaa cgcgagtaaa atcgattaag ttcctttagt gcaaataatt        60
     aaaatatttt tgtgcgactc cgttggccca aacataaaac ctgaaatcag agagactcct       120
     tggcaattaa ttttgcaagc tgaagacggt aatcggtcgg tgaaaaacaa gtttactgat       180
     ccatcggtgg actacaagta ctgtcaggta cgcccgcagg acaacctcta cttgagtgtg       240
     aatcgcagga tcctaagtag gaaacaaaaa ggaagacatc cggatcacca ggaggtgtag       300
     ccacatcatg ttaagttaag tgaaatagtg aataagtaaa ggcaacaaat ccagaagtga       360
     aaccaaaaca aaagcgtaaa atttctacac taaaaagaac attttaacat aatcaaaagt       420
     aatataaaat ttgaaattta aaataaaatt tttacgttaa aattctaaaa ttccattaaa       480
     tttaaattga atctaaaaat ttaaaattaa atttaattgt tttgagttat taaaatacta       540
     ttcatatgaa tttttaaaat taatattcat ttaaaaaatt ttttttccaa ttaaaagtta       600
     taaaagtatt taagtgattt aaattttatt aaacatcttt actatattat aattaaaatt       660
     cgaattaaat taggtgaatg aaacattcat ttcttatcta aaaaaaaaaa taataattaa       720
     tttttaaact taatattcat aagaattact cttaacaatc attttattgt aagacagacc       780
     catgaaaaaa atttcctatg gccaatcggc ataaccttat acgaccaccc gtcattgaca       840
     tacaacctca agaattacag ccagaacaga ttcaaaataa tcaattaaat caggtagaac       900
     aacaccaagc taacttagtt caacaacaaa ggcaaattca tagacaggta ttacatcaag       960
     aacacagaga aaatatggca gcgcaagagt tacaagaagc agtcagaaac ataattgctc      1020
     agcaattacc gatcctttta caacaaactc aaaacacagg attcgatttt gcacaggttc      1080
     caaaccagga aatttcctat gaaaatcgag ctaacctcga aggtttggat agggtaccag      1140
     acgtcgtaaa aagcttaagg gaattttctg gcaacccaac agaattcagc tcttggaaaa      1200
     agggtgtaga cagagttctt aaaacatatg aacacactgt aggcacagct aagtattttg      1260
     ggattctaca taccatacgt aataaaatca cgggaaacgc agacactgcg ttagaatctt      1320
     ataatactcc acttaactgg aatgccattt ctaaatgttt aactttgcac tacgcagata      1380
     agcgggattt gggcactctt gaataccaaa tgacaactct atgccagggt gctcaccagt      1440
     cggtagagga atttcatcag tcagtctaca aacacctttc gcttatcctt aataaggttg      1500
     gatgtatgga attaggaatg gaagcagaac aactcatgac gaaaatgtat agggacaagg      1560
     ccttagacac ttttgtgcgc ggacttcgcg gagatttatc tcgtcttctc ggtatgaagg      1620
     aaccaaccga tcttccttca gctttacatc tttgtctaaa gttagagaat caagcgttcc      1680
     gtgcaaacca tgcagttaat agagggcaac aatccggatt tagaaacgtg ccttcccaaa      1740
     acataccaca tttacaacca accagatcac agccaaacag gccacagtgg tcattcccca      1800
     ttaataacca gtatcaaaat cctttagttc cacccagaca aaataatatg tttaatcaac      1860
     cacgacccca gttctacaat aacaatcaaa ctccacaaat cccacaatat actgcagcac      1920
     gaccttcagg aaactttcct ccagctcgac ctttagctgc aaagccacaa ccacgaccag      1980
     aacccatgga cattgacagg accatgcaat cgaaaaatat taattacatg aacaaaccca      2040
     tacgttttga aactggtaaa agaccaccaa tgcctctaaa cgaagcagca aaaaaaacta      2100
     gaaattttaa tattcaagca gcccctgaca cttcttcaaa agtggaagat gaaacgcaat      2160
     cccttgacga atataacgaa accgtaaaat cacaggacga atcacaatct gaatatcctg      2220
     aatctctaac agaatattct gaatccatag accaagccga tcaggaatac ccatacgatt      2280
     atacctacct tcatttttta gaataacaaa ctcctcattg ccatattttg aatgcaaact      2340
     gaggagtgga gaaattttga aaatattaat tgataccggt tcaaacaata attacatctt      2400
     gccaaaattt gtaaaaaatc ctatagaaaa taaatttccg tttgacgcca tctcggttgg      2460
     cggaaatatt aaaattacac atcacaaaac agccaattta tttaacgacc ctaacacaat      2520
     aattaaattt tttttattac caaccttgaa aacatttgat gccattttgg gaaacgatag      2580
     cttaaaaaat ttaggagcaa taattaacac aaatactaaa actatgcact taaaaaatgg      2640
     gaaaataatc aatattaaag aaaaaatatt caaagcagta aatttaatta ttcctcggac      2700
     agatcatctt actgggacac aaaaatcaga tcttaaacaa cttattcaga aatatccaaa      2760
     tctatttgcc gaaccaaatg aaaaactgac ttacacaaca aacgtgaaag ctgagatacg      2820
     cacaaatacc gacacaccag tctactcgaa attttatcaa tatccaatgg cactcaaaga      2880
     tgaaattgac cgacaaataa aagaactatt agaagccaac ataatacgac cctctagatc      2940
     gccttacaat tcaccagtgt ggattgtacc aaaaaaatta gatgcctcca atgttaagaa      3000
     atatagaatg gtaatagatt acagaaaatt aaacagtgtg acaatagcag acagatatcc      3060
     aataccagac ataaattcag ttcttgcaca actgggaaat aataaaatgt tttctgtgtt      3120
     agatctcaaa agtgggttcc atcaaattct tttaaaagaa agcgatatag aaaaaacagc      3180
     cttctccgtg aataacggaa aatttgagtt cacaagactt ccatttgggt tgaaaaacgc      3240
     accatctatt tttcagcgtg ccctagacga cattcttagg gaacacatag ggaaaatctg      3300
     ttatatctat atcgatgaca taattgtctt cagtccagac gcacaatctc attccaaaaa      3360
     tttagataca atatttgaaa ccctaaataa tgctaacata aaatgccaat tggacaaatg      3420
     cgagtttttc aaaagtaaag tcgaattttt aggatttgta atttcagaca agggaataga      3480
     aaccaatcca acaaaggtac aggccatcgc taactacccc attcccaaaa acgttaagga      3540
     attaagatct ttccttggac tatcagggta ttacagacga tttattatgg gctacgctgc      3600
     actagcaaaa ccactcacca cattacttag gggcgaggat gggagaattt cgaagaaagc      3660
     ttcatcgaag aaatctattc acttcaatag tgaagccatt caggccttca ataaattaaa      3720
     aagcacctta atctcagaag acgtaatatt acagtatcca aattttaacg aggaatttgt      3780
     gttgacaaca gatgcctccg atcacgcaat cggagcagta ctttcacaaa aagacagacc      3840
     tatagccttc atatctagaa cactatctca aaccgaagaa aactacgaaa cggcaaagaa      3900
     agaaatgtta gccatttcat gggcagtaaa aacacttaga ggatatctct acggtggaac      3960
     caaggttaaa atctatactg accacgaacc acttacacac gattgtaatt ggaagggagg      4020
     gatagcgatc aagagatgga aatcatatct tgacgaatat aataaagaac tactttataa      4080
     acccggaaag gaaaacatag tggccgatgc tttgtctagg atccctaaaa gcaaccaaat      4140
     taactcatta acagcaacac aacacagcgc acagagctct ggtcataacc tcatccccag      4200
     cgtggaagta ccaataaatg cctttaaaaa ccagatattt atttataaag aaaacccccc      4260
     tgactacaaa tttactattc cgttccccac ctttcataga cacgttataa ctcgaccaaa      4320
     ctttcagaat attgatctta ttgaaatatt aaaaaaacat ttaaatccgt caatccttaa      4380
     tggaattttc acatcagaag agataatggg agaaatacag cgaatttatc cagaacattt      4440
     cggatccatt aaaatcaggt tcacacaaaa taaagtagaa gatttgacag aagaaattaa      4500
     gcaggaagaa ctaatattag aaacacataa cagagcacat agaaatgcag aagaaaacaa      4560
     aaaccaactt gcagaaaaat attatttccc caaaatgaaa caaaaaataa cgacattagt      4620
     taaacaatgt aggatatgta aagaaggaaa atatgatagg catccaccca acccagaaat      4680
     taaagaaact ccaattcctg aataccctgg acacataatc catattgaca tcttctcaac      4740
     cgaaaagaaa ttagtattga ccgcaataga taaattttcc aaactagctc aggcaaaaat      4800
     tataaaatcg aaatctaccg aagacattaa gaaacagtta catgaaataa tattctacta      4860
     tggggtaccc aaatttgtag taatggataa tgaaaaggct ttcaattcag catctattac      4920
     ttttatgatg agagatcagt taaatataac catttttaaa gctcctccct acaaaagctc      4980
     agttaacgga cagattgaac gatttcattc gaccctttcg gaaataatga gatgccttaa      5040
     aaccaaacaa atatacaata cctttgaaga attgttagac agagccattt acgaatacaa      5100
     ttacacaata cattcagtaa caaagaaaag accattagaa attttttttg gcagaaatat      5160
     taataccgac ccagaacaat atgaaaaaag caggcaggat aacatagaaa aacttaaaca      5220
     aaaacaattg atagatttag aaaaccacaa taaagaaagg aaacctataa gatcatatct      5280
     accaggacaa gaaatatttg taaaacagaa taccagacta ggctctaaat tatccccacg      5340
     ttttaaaaag gaaattgtta aagaaaatag aaatacaact attttaacag aagcaggaag      5400
     agtagttcat aaaagtaata ttaaaggtat ctaagtccga aactccttag gaaatctatg      5460
     tccacgtcag tccgaaacta aaaatttaaa ataaaaaatt ataataaata agattaccca      5520
     taacagttac agttgttgtc cgcttggggt tatcagtccg ttcgtgaggg atcggcccat      5580
     aacccaacaa taccgttgtt taatgagaca tttttttaat tacaggatgt tgtttttaat      5640
     aacgctgata ccaatggcaa tcgcgaccac cgaaataaca aactataccg atgcacatac      5700
     cataacaata cataagggta taggaaaatt acagatatca acaataaaat taattcacgt      5760
     cataaattta aaacagattg aaacggaact actacaaata agagaacaca caatgaacag      5820
     attaaaaaat agtttacatt atcatactct gacccacgaa ataattcaat cactttctgc      5880
     tctaagcaca cttaccttaa caacaaaaag ccgtcaagct aggtcaataa atataattgg      5940
     ctcagcttgg aaatatatcg caggtaaccc agatcatgaa gatttagtta tgatagaaag      6000
     taacctcaat aatttaatta aaaataacaa cgaccaaatt attatcaata atcagcttca      6060
     agacagaata aataatttaa caaccacttc taatatgcta gcaaattcaa ttcaaaaaga      6120
     cagatttttt aataatgaca ttgcgtcaag tttgcaaaca caagttagac ttataaaaga      6180
     agaaatagga aacattaaat ttgcaataca atgggccaaa attaacgtaa ttaatactct      6240
     tttattaaac gaacctgagc ttaacgaaat aaataaaata tctcagaaaa ataacattac      6300
     ctcgttttcc attgaggaga cgctggaatt tgttgatgtg tctgtcttac ataataaaac      6360
     aactataatt tacttaataa aaatacctga actcgaacca actaattatg aaaatcttct      6420
     tttaaagcct gttatcagaa accaactaat aatacattta gaaactaatg aactttttgt      6480
     atccaacaat gtaatgctag gtctacccca tgattgtaaa acttcaaact atgtcaaaat      6540
     ttgtaaaaaa agaaaaattg ttaatttaag taattcaaaa tgtatttcaa aattagctca      6600
     gggaaaggaa tcgctgtgtg attatagtaa ctcggaccac attgaaccaa tagaggaaat      6660
     agacgatggc atactactct taaatgactt caacggcagc ctaaattcaa acaatatttc      6720
     acatcaactc agaggaactt tcatgattac atttttaaac gaaactataa atataaatgg      6780
     gaaaaatttt acaaacaaag aaaaaataat tatgaaaccc gaaatcccac gaattcaaat      6840
     taccccattg caagcacaac gcatacaaat tctgtcatta gaagcattgg aagctctaca      6900
     tataaaaaat agaaagcact tacaaacctt acagaatgat tctacaataa accgaataac      6960
     cacagttaca ctaatttgcg ccattgttct tactttgatc gttttaataa actgtgtcca      7020
     cagaaaagaa aaagtaatcc tacatgtcca agaaccaaca ccacaagttt taaacaacaa      7080
     aactaatact atatcaattc ctaaaagaat aattccagaa tttaataata ttccttattt      7140
     ctaacacctc ttgaggacaa gaaggttttt aaggagggag                            7180
//
ID   Gypsy-53_DEl-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   18-JUN-2021 (Rel. 26.06, Created)
DT   18-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_DEl-I;
KW   Gypsy-53_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-362
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3090-3090 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. AG-CT termini.
XX
SQ   Sequence 362 BP; 116 A; 86 C; 60 G; 100 T; 0 other;
     agttaatcac agaaatattt cttcattttt tccgagaaat attgcaacat tgtcgatggc        60
     aacattgcaa catttcaata caacggtcaa gaacccgcaa gttcaataac ataaacacac       120
     gcatccggtt agtagccaca gcgcaatatc agaattctga ttctgcaaac cttgcagttt       180
     cagccacttc atcagagcta ggccaccgcc gcggtctctt ccgcgacgtc gacgtcgctg       240
     ccccaaccca cagcttagat cagggtattt tgaaatgaat aaagtcagtc tcaaattgaa       300
     cttcaaagaa ataaaacgtt caaaacttat tttttgggtt ttaattatcc tggaaattaa       360
     ct                                                                      362
//
ID   Gypsy-53_DWil-I repbase;    DNA;    INV; 4821 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_DWil_;
KW   Gypsy-53_DWil-LTR; Gypsy-53_DWil-I.
XX
NM   Gypsy-53_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4821
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1875-1875 (2012).
XX
RN   [3]
RP   1-4821
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           321..4670
FT                 /product="Gypsy-53_DWil-I_1p"
FT                 /translation="MKLQHWYSYVKNSIATRIMLQKLCLEVSDRAQGNLTV
FT                 DCLDSINDVNIHSGNAVKDTNCSGNAGNINDHIGTAKYSSVEQRSNQMINK
FT                 LLDSPAAALSLAKEVAMDYNGDTCVRAWISQMQNISQIYNLDVVCMRMLFI
FT                 AKLKGKAQQWLHNSATRILEPVDQLFDQLYLAFGNKTSKAEARSKFQDRKW
FT                 LASENFGSYFDEKMRLADDINIDMEELLECIIDGISSKSLRDQARIQCFSD
FT                 PRQILQAFSSVRLPELKKHPIPTQSGRESYNSVNKDVRCVNCNSKGHLAVD
FT                 CRKPKRERGSCYACGAFGHFVAQCPERKSATGNQYVRIFNIYFCQNSRSPL
FT                 IAACLLDSGSSISFVKKRHISSHLTLEPVLKEYFGLNQSQLNIFGKTLCYV
FT                 LKGSIKCYFYLNVVANESMSHDVVLGRDFLTACNLKFNLNALKLVTVQKVE
FT                 TENREDTNNSNLNYSKQLDETVTKQFDETVSKQLDETVSKQLDETVSKQVD
FT                 KIVSKQLDETVSIELNKTDSTELEEKDRIQSDRTLNEQRHEILTIQSNKKF
FT                 IEEELEKVVNDLSNINYTEDTIDDYNWDEKLNYDTKCKLRQIIKIYSLNAT
FT                 FPEEPMTRCEIKLNLEKSKPFSCSPRRLSYTEKDQLQILLDDYLKKGIIQP
FT                 SESEYASPIVLVKKKTGDIRLCIDFRKLNKVLIKDNYPLPLIDDLLDKLVN
FT                 KTVFTKLDLKNGYFHVYVNKESIKYTSFVTPLGQYEFLRMPMGLKNSPAVF
FT                 QRFINKIFCDMIKDNKLVVYMDDIMVASKDINEHLETLKEVFIRLAKNKLE
FT                 LRLDKCEFMKSCVKYLGYQISSEGIKTDDKGMEAIKNFPIPEKAQAVQSFL
FT                 GLCSYFRRFIKDFSILAKPLYDLLKKEKEFVFQEKELNCFLLLKEKLMNAP
FT                 VLAIYDYKDEVELHCDASALGFGAVLLQKKSDKLLHPISYFSKRTTGAEEK
FT                 YHSFELETLAIIYALRRFRIYLQGKRFKIMTDCNSLTLTLNKVELNPRIAR
FT                 WALELQNYDYELIYRPGNKMQHVDALSRCTNVMVVETTSFEDNLIICQSKD
FT                 PKIQNLRKLLEKAEHKLYEMRNGVIYRKANDGRLLFYVPENMEEHVLYRYH
FT                 NEIGHIGRDKMIDLINKSYWFANLKDKCTSHIENCLKCIAYSPRSGKEQGF
FT                 LHCIPKGNRPFELIHIDHYGPVSAGRAKKHIFVVVDGFTKFVRLYTTKTTS
FT                 TKEVLSSLKDYFRTYSKPKCIISDRGSCFTSSEFEEFIENYTIKHIKIATG
FT                 SPQANGQVERINRSLGPMIAKLVEPEKGLHWDLVVEQVEYAMNNTQHRSVK
FT                 QLPSIMLFGTSQRGRIVDELKEKLELINQDTKQKSLTEIRNEAIEAQNNAQ
FT                 SYNKTYYDKSKRKPKEFKQGDYVMVKNFDSTVGTSRKLIPKNKGPYRIEKI
FT                 LKNDRFLLKDVEGFQVSRNPYQGVWSIQNIRHWIKK"
XX
SQ   Sequence 4821 BP; 1769 A; 744 C; 978 G; 1330 T; 0 other;
     atctcagaag tggttcttac tcgccatgaa cgaagttaac tttaatttgt gttccgtagt        60
     gcttttaaag cagtggctac agagtctcgg tctgccaaca acgggcacta gagccgaaat       120
     tatggcccgt ctgcttgaaa ttcctctaga gcagcgtgga agtccaccgg agtctcagca       180
     agctgaaaac gttgagcagg agggaaatcg tgatcagccc ctagctcaac atgtggatgc       240
     ggagctaccg catgaggagg agactgaagc tgtcgaacaa caaatcagcg ctcagccaga       300
     acaaatggaa gcattaaacg atgaagctgc aacattggta cagttacgtg aagaactcaa       360
     tcgctaccag aatcatgcta cagaagttgt gtctcgaggt ctcagatcga gcacagggca       420
     atcttacagt cgattgcctt gacagcatta atgacgtcaa catccacagt ggcaacgctg       480
     taaaagatac caactgcagt ggcaacgctg gaaatatcaa cgaccacatt ggcaccgcca       540
     aatatagtag tgttgaacag cgatccaacc aaatgataaa caagttattg gattcaccag       600
     cagcagctct gtcgctagca aaggaagtcg ctatggatta taatggggac acttgtgttc       660
     gcgcttggat ttctcagatg caaaatattt cgcaaatata taacttggat gttgtatgca       720
     tgcggatgct gtttatcgct aaactaaagg gtaaagcaca acagtggctg cacaacagtg       780
     cgacacgtat tctcgagccg gtcgatcagc tgtttgacca actttacttg gcatttggaa       840
     ataaaacgtc gaaagctgag gctagaagca aatttcagga tcgcaagtgg ctagccagcg       900
     agaattttgg ttcttatttt gatgaaaaga tgaggctggc tgatgacatc aacatcgata       960
     tggaggaact gttggagtgc atcattgacg ggatatcatc caaaagtttg cgcgatcaag      1020
     cacgtatcca gtgtttttcg gatccaaggc aaatccttca ggcgttttca tcagtgcggc      1080
     taccggagtt aaagaaacat cctattccaa cacaatcggg cagagagtct tataacagcg      1140
     tcaataagga tgtgcgttgc gtgaattgca attccaaggg tcatctagca gttgattgcc      1200
     gtaaaccgaa aagggagcga ggatcttgct acgcttgtgg tgcttttggc cattttgttg      1260
     cccaatgtcc ggagaggaag agtgcgactg gcaaccaata tgtaagaata ttcaatatat      1320
     atttttgtca aaattctaga tctccattaa ttgcagcgtg cctcctagac tctggaagct      1380
     ctatttcttt tgttaaaaaa cgtcatatat caagtcacct aacactggag ccagtattga      1440
     aagaatattt cggtttaaat caaagccaat taaacatatt tggaaaaacc ttatgttatg      1500
     tattgaaagg atcaataaaa tgttattttt atttaaatgt agtagcaaat gagtctatga      1560
     gtcacgatgt agttcttgga agagactttt taacggcatg taatttgaaa tttaatctaa      1620
     acgcactgaa attggttaca gtacaaaaag tggagactga aaacagagaa gatacaaata      1680
     attctaactt aaactatagt aaacagttag atgagacagt tacaaaacag tttgatgaaa      1740
     cagtcagtaa acaattagat gaaacagtca gtaaacaatt agatgaaaca gttagtaaac      1800
     aagtagataa aatagtaagt aaacagttag atgaaacagt tagtatagaa ttaaataaaa      1860
     cagatagtac agagttagag gaaaaagata ggatacagtc tgataggacg ttaaatgagc      1920
     agagacacga aatacttact attcaatcaa ataaaaaatt tatcgaggaa gagttagaaa      1980
     aagtcgtcaa tgacttatca aatattaatt acactgaaga cacaattgat gattataatt      2040
     gggacgaaaa actgaattat gataccaaat gtaaactaag acaaataatt aaaatttatt      2100
     ccttaaatgc gacattccca gaagagccaa tgactagatg tgaaatcaaa ttaaatttag      2160
     aaaaatcgaa accctttagt tgttctccca gacgcctttc atatacagaa aaagatcaat      2220
     tgcaaatatt attagatgat tatttaaaaa aaggaattat acagccgagt gagtcggagt      2280
     acgcgtcacc aatcgtttta gtaaaaaaga aaacaggaga tattcgcttg tgtattgact      2340
     ttagaaaact aaataaagtt ttaattaaag acaattatcc attaccactg atagatgacc      2400
     tacttgacaa attagtaaat aaaacggtgt tcacaaaatt agatcttaaa aatggatact      2460
     ttcatgtgta tgtaaacaag gaatctatta agtacacttc gtttgtcact ccgttagggc      2520
     aatacgaatt tttaagaatg cccatgggat taaaaaattc gccagctgtg tttcaacgct      2580
     ttataaataa gatattttgt gatatgatta aagacaacaa gttagttgtg tatatggacg      2640
     atatcatggt cgccagcaag gatataaatg aacacttaga aactctaaag gaagttttta      2700
     taagattagc taagaataaa ttagagctac gtttggacaa atgtgaattt atgaagtcct      2760
     gtgtcaaata tttaggttat caaatatcaa gtgaaggtat aaaaacagat gataaaggaa      2820
     tggaagcgat aaaaaatttt ccaatacctg aaaaggcaca ggctgttcaa agttttcttg      2880
     ggttatgctc gtactttcgt agatttatta aagatttttc tattttagcg aaaccgttat      2940
     atgatctttt gaaaaaggaa aaagaatttg tgtttcaaga aaaagaatta aattgttttt      3000
     tactgctcaa agaaaaactt atgaatgcac cggtgttggc aatttacgat tacaaggatg      3060
     aggttgaatt gcattgcgat gccagtgctt taggattcgg agcagtgtta cttcagaaaa      3120
     aatcagacaa attgttgcat cctatatcct atttttcaaa acgaacaacc ggagcagaag      3180
     aaaagtatca cagctttgag ttagaaactc ttgcaatcat ttatgcctta cgcagatttc      3240
     gtatttacct tcaaggtaaa cgctttaaga ttatgacaga ttgtaattct ttaacactga      3300
     cattaaacaa agttgaactt aaccctagaa ttgctagatg ggcgttagag cttcaaaact      3360
     atgattatga attgatttat aggcccggaa acaaaatgca gcatgtagat gctttgagca      3420
     gatgtacaaa tgttatggta gttgaaacaa caagttttga agataaccta ataatttgcc      3480
     aatcaaagga tcctaaaatt caaaacttaa ggaaattatt agagaaggct gaacacaaat      3540
     tgtatgagat gagaaatgga gtgatttata gaaaagcaaa tgatggtaga cttctctttt      3600
     atgttccaga aaatatggaa gagcatgtgt tgtataggta tcacaatgaa ataggacata      3660
     tagggagaga caaaatgatt gatttaatta ataaaagtta ctggttcgca aacctcaaag      3720
     acaaatgtac tagtcatatt gaaaactgtc ttaaatgcat tgcctattct ccaagatctg      3780
     gaaaagaaca aggtttcttg cattgtatac ctaaaggcaa tagaccattt gaattgattc      3840
     acattgatca ttatgggcca gtgagtgctg gtagagcaaa aaagcatata ttcgtggttg      3900
     tagatgggtt tacgaaattc gtacgattat atacgacgaa aacaaccagt actaaagaag      3960
     ttttgtcaag tcttaaagat tattttagaa catatagtaa accaaagtgt attatttctg      4020
     atagaggtag ttgttttact tcaagtgagt tcgaggagtt tatagaaaac tataccatta      4080
     aacatattaa aatcgcgacc ggatctcccc aagcaaacgg acaggtagaa agaattaaca      4140
     gaagtctagg cccgatgatt gcaaaattag ttgaacctga gaaaggattg cattgggatt      4200
     tagtggtaga acaggtggag tatgcaatga acaatacaca gcatcgaagt gtaaaacaat      4260
     tgccaagtat tatgttgttt ggaacgtcac aaagggggcg aatagtagat gaattaaaag      4320
     agaaactaga attgataaat caagacacca agcagaagag tttaacagaa atcaggaatg      4380
     aggcaattga ggctcaaaat aatgctcagt cctacaacaa aacttattat gataaaagca      4440
     aacgaaagcc aaaagaattt aagcaaggag actatgttat ggtaaaaaat tttgatagca      4500
     cagttggtac gtcaaggaaa ctaattccaa agaataaagg accttaccga atagaaaaaa      4560
     ttttaaaaaa tgatagattt ttacttaaag atgtggaagg ttttcaagta tctcgtaacc      4620
     catatcaggg cgtgtggagc attcagaata taagacactg gatcaaaaaa tgaagatcaa      4680
     atttaagatg tgaagaaaaa tataaaaata ttaaatgtat tactatgtta cttaataatt      4740
     agaaaatata catatgtatc aatatataga aataagttaa gattacgtga tcaggagatc      4800
     caaatgtcag aatggccgag t                                                4821
//
ID   Gypsy-53_DWil-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_DWil_;
KW   Gypsy-53_DWil-LTR; Gypsy-53_DWil-I.
XX
NM   Gypsy-53_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-321
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1876-1876 (2012).
XX
RN   [3]
RP   1-321
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 321 BP; 119 A; 57 C; 46 G; 99 T; 0 other;
     tgtagtaggc tacatataaa tcccctggtc tacgtatgta tataatactt atttacttac        60
     tttaataata acgctaatcc aatacatata taaaagaacc ctattgtata agcgataacc       120
     tgtattatgt agcgattaag ctatatcgat atcaacgctg tgatatcgat gacttttaaa       180
     agagacaacg ctgatacctt cttccgttct gaaaagctgg cagcgaccag acgtgcattt       240
     gagaaaaaca ttaattatta agccatccat tgtgaattaa tataaaagct gagaaaacaa       300
     taaacattta taactcttac a                                                 321
//
ID   Gypsy-53_LMi-I repbase;    DNA;    INV; 7186 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7186
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..1743
FT                 /product="Gypsy-53_LMi-I_1p"
FT                 /translation="MASGDEAKGNSGGDMIDSVQRQVAGYVVNEVEFERQF
FT                 ALIQGRLAEQGKRSVEVQVDVGESAVVRSLREKEGLQEELIRMLQERNRFL
FT                 VERIIQLEREREELVNEVGRCQSRLGVETVETQVPGDGEGEDRLTDLLGHI
FT                 EGLAGRRVSRTGCESQSRVREVAAPVVVNPAGNLVNSLQAVSLIAPFAGKN
FT                 HENVESFLQNIRDVGRLCQWPDGFLVNVVKLKLAGDARTFVESVSALRDAT
FT                 HFEVLAQGLRQRFMDKRGASYYRDQLFTMRQKSGEGYDAYADRIRAVSCKT
FT                 YKLTGDVVRDEVLLEEAEARAVDVFVRGIDPQIGGEVKVSFPRTLHEAVRL
FT                 AMLREEAKRFVAAPTRNREQKRVFTQEAKCGRCKRDGHRADECLAPYCPHC
FT                 RSMGHLGMHCSKNPDRRVGNRGKGQSRWGNDQGAGAATPPGPQSKR"
FT   CDS           1686..5351
FT                 /product="Gypsy-53_LMi-I_2p"
FT                 /translation="MGKRSGGRCSHPSRPPVKTVNPMSFQGNTEVASVTLQ
FT                 GRIGRRRVKVLVDTGAQVSILFLSRGDKKPLEPPCCRIRGLGDTVVWPLGA
FT                 CHVNLRVGREEYPFKMEVLPKRSRELDVILGNDFLRQFQGIVDYRSQTVQF
FT                 GDVVHRFGSGHTVQTRGGPEKGAFSRDSAEPRTAVLKATTPVTINGGTGRV
FT                 LWVTFESRNLSPTALLVDPLARNEVLDKMRVHVKRSLCNAESEGGKFRIPV
FT                 SIDNFGTKEAVIPRGTVLASVQCVEAEEVPAVRSRENPGKEARVFSVEELP
FT                 AVTPQLEERLKGKLAHLDEASQESLYSVLKEYAGLFENRKCLPATDLVYHE
FT                 IPTGNARPIAQKAYRIPHHLQPVVDEIIQEQLDAGIIQPSASPWASPIVLV
FT                 PKKSLNGEKSYRMCVDLRAVNKVTTPDTYPLPRIDETLDRLGNCRYFTTLD
FT                 MRSGYHQIKIAPQDTPKTAFIVPSGLYEFXRMPFGLRNAPASFQRFADLLL
FT                 RGLKPITCLVYLDDIIIFSKTIEEHAERLRNVLARLRGANLSLKLEKCFFA
FT                 ESQVQYLGHIISSDGVKPDPRLTEAVRTFPVPASIKELQSFLGLCNFYRRY
FT                 VQDYAAITKPLTHLLKKGMTFNWTPECDRAMQRVKDILTSSPLLVYPDFEK
FT                 PFILSCDASDFAVGCILSQEQNGEEKPIGYASRQLNKAERNYSTTEKELLA
FT                 VVFGVNYFRCYLYGRPFTVVTDHAALQWMLSLKDPSSRLTRWALRLSEFDY
FT                 TVRHKPGKLHQNADALSRKVRMVQVEDVLVDELKKEQKADAECQEYAKRPG
FT                 FELVDDVLYRKTPLGNRIVVPKALQPQILAQCHDSLQACHNGKKATNCRIA
FT                 TRYWWRRRQRDVDKYVRDCLPCAQRTQNKRPRIPMQTLPETSRPWQLVALD
FT                 IVGPFPQTPRDNRYVLSIIDHFSRFLILVPLADMSAETVAQAFVNRVVLPY
FT                 GSPEALLTDRGTNFMSALFVQVCKLLRIRKWRTSPFHPKANGRVERAHKTI
FT                 VKMLAHYVNSTHTNWDKYLAFVASAHNSRVHESTGLTPYEVIYGRTMNSPF
FT                 ELDKLPPGVDVQEVKSLAHRLKDIWRKVQKSNRKATDRQLRRGNKGATLPH
FT                 YKIGDWVLVRNTVVKQGRTKKFTPLFEGPYRIIRLTSPVNAEVQLTGRTVV
FT                 VHFDRLKPYHGQVTPRPAVIEPAAPRKPGRPRKIKPTEPIVPPTRHKYPLR
FT                 SRHPYGLRSRDP"
FT   CDS           5599..6471
FT                 /product="Gypsy-53_LMi-I_3p"
FT                 /translation="VNKTTPDNRKFEGSATRAQLSCAWPCRSRHQVAAPSP
FT                 PRPLPLAQHLPLALLHRQPSRPSKRTSSVVTRTLTDSAACTPARLRKSAPR
FT                 RATSCASQLTRKQCPTVATSRLYAVPRPTTVSVTCYDSHLVSQTYRVKLSN
FT                 SGLLINSSHCDIVTPTTKIAAQLRYHYNASVSPFLLHLPEIPIAVPVPTDL
FT                 PKTPHFNSSHLRHTLNELLEHEKGQISMDRAIAHMHNWNSDNYHRTVVLPS
FT                 ATLPPLTLVMIITILWLMYKKGSFHQCCPAKPAIVPECQPTGNFTHSTPT"
XX
SQ   Sequence 7186 BP; 1896 A; 1716 C; 1950 G; 1623 T; 1 other;
     tctggtgtca gaagtgcgat gcatttccgg ggtttgggag tgcgtgaggt cgagagttga        60
     aaagttatcg agacgcgaca tctgtggcgc cgcgctgggt agcgcgccgc tgcctgttcc       120
     gctgtgtggc cttgggccgc gcacgcctga cactgtagtg ggccgcctgg gctgagtcac       180
     gggccgcgcg atgacgcgct gccgaccggc tgttcaactt cgccgccgct gccgcctgcc       240
     ggtgtcctaa tagccggggg gtcctgggtt cggtgccgag ggccggcaca cgaccgtcgc       300
     cgctgatgtg gtcaccgccg cctgccgtct acaagccgcc ccgccgtcgc cgcagcagtg       360
     attactgaag taagtgccgt cgttttattt accattgttg gtgtgggcac gtagactgtc       420
     accatggcaa gtggggacga agccaagggg aattccgggg gtgacatgat agattctgtc       480
     cagcgccaag ttgcgggtta tgtggtaaac gaagtggagt tcgagaggca gtttgcgctg       540
     attcagggac gattagccga gcagggaaag aggagtgttg aggttcaagt ggatgtggga       600
     gaaagtgccg ttgtcaggag cctgagggaa aaggagggat tacaggagga gttaattagg       660
     atgctacagg agaggaaccg tttcctggta gaacgtatta ttcagctcga aagggaacgt       720
     gaggaactgg tgaatgaggt tgggaggtgc cagtcccgtc ttggggtaga aactgtggaa       780
     acccaagttc ctggagatgg tgagggagag gacaggctca cagatctgct ggggcatatc       840
     gagggtttgg cgggaaggag agtgagtaga accggttgtg aatcacagag cagggtgaga       900
     gaggtagccg ctcccgtggt agtgaatccg gccggtaatc tcgttaatag cctccaggca       960
     gtaagtctga ttgctccttt tgccggtaag aatcacgaga atgtggaaag ttttttgcag      1020
     aacattcgcg atgtgggtag attgtgccag tggccggatg ggtttctggt gaatgtggta      1080
     aagctgaaat tagctggaga tgcccgcaca ttcgtagaat ccgtgagtgc attgagagac      1140
     gctacgcatt ttgaagtgtt agcgcagggc ctgaggcaga ggtttatgga taagcgaggg      1200
     gctagttact accgggatca gctgtttaca atgcgacaga agtccggtga ggggtacgac      1260
     gcatacgcgg accggattag ggctgtttct tgcaagacct ataagttaac cggggatgtc      1320
     gtaagggatg aagtattgtt ggaggaagcc gaggccaggg cagtggatgt tttcgtgagg      1380
     ggtattgacc cgcaaatagg aggagaagtg aaagtatctt tcccccgtac actacatgag      1440
     gccgttagat tggcgatgtt acgtgaggaa gcgaagaggt ttgtagccgc accgacgcgg      1500
     aaccgtgagc aaaaacgggt gtttacgcag gaagccaaat gtggccggtg taaacgcgat      1560
     ggccaccgcg cagatgagtg cctggcgccc tattgcccgc attgccgttc catggggcac      1620
     ctagggatgc attgctcaaa gaacccggac agacgggtgg gtaaccgcgg aaagggacag      1680
     agccgatggg gaaacgatca gggggcaggt gcagccaccc ctcccggccc ccagtcaaaa      1740
     cggtaaaccc gatgagtttc caggggaata ccgaggtggc gagtgtgacg ttgcaaggca      1800
     gaataggaag gagacgagta aaagtactag tagataccgg agctcaagtg agtattttat      1860
     tcctgtctag aggtgacaag aaaccgttgg aaccgccctg ttgccggatc cgaggattag      1920
     gggacaccgt agtttggcca ttaggagcct gtcatgttaa cctgagagta gggagagaag      1980
     aatatccgtt taaaatggaa gtattgccga agaggagccg agagttggat gtgatcctgg      2040
     ggaacgattt ccttcgccag ttccagggta tagttgacta ccgatcacaa acagttcaat      2100
     tcggtgacgt agtgcatcgt tttggtagtg gtcacactgt tcagacgcga ggaggtccgg      2160
     agaaaggcgc cttttcccga gactccgcgg agccgcgtac tgcagtgctg aaagcaacaa      2220
     cccctgtgac gataaacggt ggaacaggaa gggtcctctg ggtaacattc gaatcccgta      2280
     acctaagtcc aaccgcgctt ttggtcgatc cgctcgccag aaacgaggtt ttggacaaga      2340
     tgcgagtaca cgtaaaaaga agcctgtgca atgccgagag tgaaggagga aaattccgga      2400
     tacccgtgag tatcgataat ttcggtacga aagaagcagt aataccgcgt ggaaccgtac      2460
     tggcgagtgt ccagtgcgtg gaagccgaag aagtaccggc cgttcgaagt agggagaatc      2520
     cgggaaaaga agctagagtt ttttccgtgg aggagttgcc tgccgtcacg ccacagttgg      2580
     aggagcgttt gaaggggaag ttggcccatc tagatgaagc aagccaggag tcactatatt      2640
     ccgtactgaa ggagtatgct gggttgtttg aaaaccggaa gtgtttgcct gctaccgact      2700
     tggtatacca tgagatcccg actggaaacg ctagacccat tgcacaaaaa gcgtaccgaa      2760
     ttccgcacca tctacaaccc gtggtggacg aaatcattca ggagcagctg gacgcaggga      2820
     ttatacagcc ctcagctagc ccctgggcgt caccgatcgt gctagtacca aagaaatcat      2880
     tgaatgggga aaagtcatac cggatgtgtg tagacctacg agctgtgaac aaggtaacga      2940
     cccctgacac gtacccgttg ccgaggattg atgagacgct ggacagattg gggaattgcc      3000
     gctactttac aactttggac atgaggtcgg gttaccatca gattaagatt gcgccacaag      3060
     atacgcctaa aacagcgttc attgtgcctt ccggattgta cgaattckta agaatgccgt      3120
     tcgggttgcg taatgcccct gcgagttttc agcggtttgc cgacttacta ttacgaggat      3180
     tgaaacctat tacctgtctg gtatacctgg acgacataat tatattctcc aaaaccattg      3240
     aagagcatgc cgagcggttg aggaacgtcc tagcgaggct ccggggagct aacctaagtc      3300
     taaaattgga aaagtgtttc tttgcggagt cacaggtgca gtacttgggc cacataatca      3360
     gctccgacgg agtaaaaccg gacccgcgtt tgacagaggc cgtcagaacc tttccggtac      3420
     ccgccagcat aaaagaattg cagagtttcc tcggtttgtg taatttctac cgccgttatg      3480
     tgcaggacta tgccgcaata accaaaccac ttacccatct gttgaagaag gggatgacat      3540
     ttaattggac tccagaatgc gaccgcgcca tgcagcgtgt aaaagacatt ctaaccagct      3600
     ctccgttatt ggtttacccg gactttgaga aacccttcat tctgtcatgt gacgcgtcag      3660
     attttgccgt gggatgcatt ttgagtcagg aacagaatgg ggaagagaaa cctataggat      3720
     acgcgtcccg tcagctcaat aaggctgagc ggaattacag caccacagag aaggaattgc      3780
     tagccgtagt ctttggagtt aattacttta ggtgttacct gtatggcagg ccattcaccg      3840
     tagttaccga ccatgccgcc ctgcagtgga tgttaagcct gaaggatccg agtagtcgat      3900
     tgacgaggtg ggctttgcgg ctcagcgagt ttgattacac agtgagacac aagccgggaa      3960
     agttgcacca gaacgctgat gcacttagcc gcaaagtacg gatggtgcag gtggaagatg      4020
     tactcgtgga cgagctgaaa aaagaacaga aagcggatgc ggaatgccag gagtacgcca      4080
     agcggccggg tttcgaacta gtggatgatg ttttgtacag aaagaccccg ctgggaaatc      4140
     ggatcgtggt acccaaagct ttacaaccgc agattttagc gcagtgtcac gacagcttac      4200
     aagcctgcca caatgggaaa aaggctacaa attgccgaat cgcaacgcga tattggtggc      4260
     gtcgacgtca gcgagatgtg gataagtacg tacgcgactg cctaccatgt gcacagagga      4320
     cgcaaaataa gcgaccgcga ataccgatgc aaacattgcc agaaacttct aggccatggc      4380
     aattagttgc cctggacatc gtcgggccat tcccacaaac acctcgggac aataggtacg      4440
     tcctatccat catcgaccat ttttctaggt tcctaatctt agtccctctc gcagacatgt      4500
     cagcagagac cgtagcacaa gctttcgtta accgcgtggt attgccctat gggagcccag      4560
     aagccctact tacggacaga ggaacgaatt ttatgtccgc tctgtttgtc caagtctgta      4620
     agttactgag gataaggaaa tggcgaactt caccgttcca tccgaaagcc aatggccggg      4680
     tagagcgagc gcataagacc attgttaaga tgcttgcaca ttacgtgaat agcactcaca      4740
     ccaattggga taaataccta gccttcgtgg cctcggcaca taacagccga gtgcatgaat      4800
     caacgggtct tacgccgtac gaagtcatct atggccgcac tatgaactct ccgttcgaat      4860
     tagacaagtt gccgccgggt gtggatgttc aggaagtgaa aagcctggca caccggttaa      4920
     aagacatctg gaggaaagta cagaaaagca ataggaaagc cactgaccgc cagttacgcc      4980
     gcgggaataa gggagctacc ttaccacact acaaaatcgg agactgggta ttggtacgaa      5040
     ataccgtggt taaacaagga cgaaccaaaa agttcactcc gttgttcgag gggccgtacc      5100
     gaataatacg tctcacatca cccgtcaatg ccgaagtgca gttgacaggc cgcaccgtgg      5160
     ttgtacactt cgataggctg aagccctatc atggtcaggt cacgccacgt ccggcagtaa      5220
     ttgaaccagc cgcacctagg aaaccgggac gaccgaggaa gataaagccg acggaaccta      5280
     tagttccccc tacccgtcat aaatacccgc tgagatctag gcatccctac ggtctacgat      5340
     cgagggaccc gtaaagctaa atgttagggg acggaaatgt aagttaacga taatgtgaca      5400
     ccgtagcaca aaagccgtag aaggtagttg taggatagtt acacctagga taagccttgt      5460
     tatttactat tatgtgtaag ggagaatttt tgtgatgtgt ggttggatat tcctagagta      5520
     ggagagtata gttaataggt ggggaggagc tgtctttatt acgttaatag cctgtgctgt      5580
     tttccagtag gtaggtaggt aaataaaacc acgccggaca ataggaaatt tgaaggaagc      5640
     gccacgcgcg cccagttgtc ttgcgcgtgg ccttgccgct cgcgtcacca ggtcgccgcc      5700
     ccttcccctc cccgccctct tccccttgct cagcacctgc cgctggccct gcttcaccgt      5760
     cagccgtcca ggccaagcaa gcgtacgtcc agtgtcgtaa cgaggacact cactgattca      5820
     gcagcctgca cgcctgcccg attgcgaaag tcagcacctc gccgtgcaac cagctgtgct      5880
     agtcagctaa cccggaagca atgccctacc gttgccacta gccggctgta tgccgtgccc      5940
     cgcccgacca ctgtctctgt aacgtgctat gattcacatt tggtatcgca aacttaccgg      6000
     gtaaagcttt caaacagtgg actactgatc aatagttcgc attgcgatat tgtgaccccc      6060
     actactaaaa ttgccgcaca actgcgctac cactacaacg caagcgtcag tccattcttg      6120
     ctccacctac cagaaatacc aatagctgta cctgtaccaa ccgatttgcc gaagacacct      6180
     catttcaaca gttcccatct ccgccacaca ttaaatgaac ttttggaaca tgaaaaagga      6240
     cagatcagta tggatagagc aatagcacat atgcataact ggaactccga caattatcac      6300
     agaaccgtcg tgctacctag cgctacgcta ccacctctca ccctggtcat gataataaca      6360
     atattgtggc tgatgtacaa aaagggaagt ttccaccaat gttgcccagc caaacccgcc      6420
     atagtacctg agtgccaacc gactggtaac ttcacccata gcacaccaac gtaaagaact      6480
     ggttctaacc cccttagttg taaatcatag cgtagttgta gttatactct agtcctaaag      6540
     ggatatacat gtaacattcg ttcaacctta ttagctatgt tatgttacca agtaattact      6600
     atagttaaat ctataataca caacgattag ccatagcata accgtctgac taagtacgta      6660
     gttatcctgt aaattttaac ttttgttaat aacatcgtca tgcccactgt atattcccct      6720
     ttactccaat taaagattgt ccttccattt aatttgcgag atatacctgt tacaattcac      6780
     attgttagtt catgttattc aatagcctaa gaacattgtt ctctccgagg aagtaaattg      6840
     ttatctagct tagacaccta gcttagagaa ggccaaagtg tttcagaccc agctttccag      6900
     ttcaccagcc aatcaccggt accgccgact gcaccaacca cccggcagcc gtggcgctac      6960
     caccatcact tcccgaacta ttgtgagcca accaaggcgc cccgggcatc cgccacaccc      7020
     acgcaagtct gaattctgta ttgtaaacat ataattactt tcacaaaaag aaattattgt      7080
     aaaagcccct tttgcccgcc gtcgcctccc atgggacctt tgttttaatt gtaaagctaa      7140
     aagagactta ccgagtggta aaccactccc atggaagggg gaggaa                     7186
//
ID   Gypsy-53_LMi-LTR repbase;    DNA;    INV; 709 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-709
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 709 BP; 176 A; 237 C; 144 G; 151 T; 1 other;
     tgtacaccag tggcacgtag gagtcgcgag ttttcaaaat attcttggta cttttactgg        60
     catttaattt ccttttgaag tataagtcaa atttccgtac taagataacg ttcaccaagg       120
     caacaagcac cttccgtgcg ccaacgtgag gtcgctgccc tgtccccaat tccggccgcc       180
     agccgtacgt ttcaacaccg cgcgcccggt gccatcgacc ctagtttggc aatcctctgt       240
     accagcactt gcagcaacta ccggccccaa aactgctgaa caacacgcta gtaccgagcc       300
     cccaccaaag agcgccagcc aaacagagcc cagaacgtgg agctaccaaa agattcccgc       360
     caatcaggga ctagagcgtg taacgtccta gattcggtgt ccgctagctg caagacgggc       420
     agtgagtcca tgakggattc cgcgttcaac tctcgaccga gcagcacgat ccctccgctc       480
     tgcagcccgc cgggctagca cccgcagtct cctagcacaa tgctaaactc ctatctacca       540
     ctggtgccac tcctcaggcc ttaagaacca gctcatgtat cccttaatcg gaaatatacc       600
     ttctcctgga gacgaaacct gctgcgtgta ctcatgattt ctccaatcac tccccaaacc       660
     ccgcacggaa attatacccc gcctccacct ctcgaaccca tcctgtaca                   709
//
ID   Gypsy-53_MSe-I repbase;    DNA;    INV; 4181 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4181
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 930-930 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
SQ   Sequence 4181 BP; 1312 A; 777 C; 931 G; 1159 T; 2 other;
     gtggcgacga gaattaacta cctacacagc aagaaaaatg accgcatcgc attacggaat        60
     tttaacgagt tacgaccata atgtgcagtc atggaaaaat tataaaagtc gaattacgca       120
     gtggtttatc gcgaacaata ttacgtcaac ttcggacgcg caggggtgaa gagaagagcg       180
     atattactaa gcgcactcgc ggagggcact tttcaattgg catcagattt agcattgcca       240
     aaagatgtgc aagatgtgcc atacgaagac atcataaagc ttctggatga ccacttcacg       300
     ccaaaacgct taggattcgg ggaaagaagt acgttctaca acgcaacgca aaatcccgac       360
     gaatcctttt cacaatgggc agcaagactg cgggggttga cagcttattg caacttttcg       420
     aacgtggaag aggcgcttcg cgacaaattt gtgatgggcc tgctgccggg gcgcgagcgc       480
     gagaaattat tcgcccagga tttgactgac ttgacgctgg cmaaagccgt taagttagca       540
     gaagcaatta gatgtgcacg caccactgca tcgacatcga catcgacatc gcggacgcct       600
     gcgctttgcg taggcaatga gaacagctgt ttaaaatcaa caacaatgct gcaaatgcgg       660
     gtcaagtgat gaaaaagtgt ttagtgtgtg ggcgttttaa tcacccatcg tctaagtgtc       720
     ggtttgccaa ttatacatgc aaaaaatgca acaaaaaggg tcatttacaa aaaatgtgcg       780
     gcaaagtgaa tttcgtgagc gttgagagtg tggatgagaa cggtgacgac ggtgagatat       840
     ttaatattca gtcaaaatac ggtgagccta tggttgagtc ggtgaaggtt agtgggattc       900
     cattaaattt taaaattgac agtgggtcag cggtgtcggt aatcgcagac aatatttata       960
     acacctattt taaaaataca cctcttttac gcaccgggaa aaaactatgt acgtatgtcg      1020
     gtaaccaaat gaactgcgca ggctatatac gagttccagt aacttattta gggcaaacwt      1080
     acaatcttaa tatttatgcg gcggcggtcc gcccttactc gggcgcgatt tcatatcgag      1140
     ttttaagtta agtttcgccc agtgtaattt tttaaattgt tctgagaaaa ttatgcgtag      1200
     tttacaatcg ctttatccag aggtattttc aaatgaatta ggcacattta aaagtgtaaa      1260
     attaagttac aattaaagcc tggttcgcag cctatttttt aaggcacgcc ctgtcgcatt      1320
     cgcattgaag gacaaaattg acacggaact agatcggtta acagaattag gtattttaaa      1380
     accggttgaa cactctgatt acgcatcccc tatagtgccc gtgttgaaac ggaacggtgc      1440
     aatcagaata tgtgcggatt attcggtgtc tattaataaa cagttaataa tcgaacaata      1500
     tcctctaccg tctatacaag aattgtttac gaagttgtat ggcggtcaac aattctcaaa      1560
     aatagacttg tcaatggctt ataaccaatt tgtcctagac gatgattcac agcatattac      1620
     ttgcattaat acgcatcgcg ggttatataa atatacacgt atggtgttcg ggatgtcaag      1680
     tgcgccatct atatttcagc gtgctatgga ttgcttgctg tcaggaatgg aaggcgtatt      1740
     atgtttgtta gacgatatac ttattactgg ggtcgattac aaacaacatg tggaaagatt      1800
     acaggccgtt ttttgtaggc tgagagatgc cgggttagta gtacaaaaga taaatgtgaa      1860
     ttttttaagg agcaaattaa ttacttaggg tacacgattg acaaagccgg attaaaaaag      1920
     tcagaagaga aagttaaggc tatgttacaa gctccagtac ctaacaatgt gatgaagtta      1980
     cagtcgttct taggattggt aaattattat agaaatttca taccgaatgc atctagcata      2040
     cttagtccct tgtatgattt gttgaaaaag gggtaaaatg gacatggtca caaatccacg      2100
     ataattcttt taatacaata aaaaagtatt tagcatctga acaggttctg gcacatttca      2160
     acccgaaaaa taatgtaata ttaacggtcg atgcctcgcc gaatggattg ggagccatac      2220
     tgtcgcagtt agataccaac ggggttgaac gtccaatctc tttgcgtcgc gtacattaaa      2280
     ttctgctgaa aaaaaatact ctcaaatcca gaaagaggcc accgctatta tttttggagt      2340
     aaggcgtttc caccaatacc tgtacggtag atctgaacct tttatattac gtactgacca      2400
     taagccttta atttcaattt ttgggcctta taaaggtatt ccggaagtgt ctgcgaacag      2460
     attacagcgt tatgctttgt tcctgagtgg ctacaattat cgaatagaat atgtaagtag      2520
     taataataat tgtgccgact tctatcacgt gctagcctgc caaacgccga gacaggggag      2580
     gagctttatc ggtatcgaga aaacggatga ttgtaatcta agcgttggga catttgcgcg      2640
     actgtcggac ccggcgtcat acatacattt tgtgttagac ggaagtttcc ctatcacgcg      2700
     aaacgatttg cgcatagcca cagatagtga cgaaacatta gcccaagtaa aaaattacgt      2760
     tatgcagggt tggcctaaaa atatcagaaa cgaacctgcg ctcgtactat ttgtgtagaa      2820
     cacagttagc ttatgaagat ggctgtttaa tgcgaggcca taaaatagta ttgccggaga      2880
     agttgcgttc taaaattcta tcggaactac ataagtcgca tttagggata gtcaaaacaa      2940
     aagcggaggc aagatcccgt ttttggtttc ctggtataga cgcgtcgata gagggtatga      3000
     ttggttcatg cttgatatgt acgcagttgc gatcgtctcc accccaagca cctatgtccc      3060
     cgtggaaata tccaccgcaa ccattttata gaattcatct ggattttttg ggtccattgc      3120
     acggatctat gtatttagtc atagtagacg cctacacgaa atgggttgaa gttttaatac      3180
     gcctgcaacc tctaacgccg tagtagaaaa actatacgaa tatgtatctc ggtttgggtt      3240
     accgcacacc attgttaccg acaacgcgac cacatttact tccgatagtt ttaaaacttt      3300
     ttgcacacaa aacggggtta tacatctaac gtcaccggcc taccatccag cgagtaatgg      3360
     tcaggcagag agttacgtga aaatagtgaa gaaaggtata aaatcatgta tattgtcatg      3420
     tgaaaacgta acagagagta aattgaaatt atttcagtat ttatatgatt atagaaactc      3480
     cattcacagt accactttaa tatcaccggc tcaattggta tatggtcgca cgttgagatc      3540
     tcgtttagat ttattaaata aaccaccgat ttcatccaca aacttaaatg caaccgtgca      3600
     aaataaacag tgttcacaga ttaagcatca cggcggtaaa aataaaaaaa catttaaaat      3660
     tgatgaacaa gtattgttca agatgttctt aaataatact aaatatattt ggagacgtgg      3720
     tacaataata caacatattg gcaaggttat gtacctggta aaagatatat taagtaaaaa      3780
     atgtaaaaaa cataaaaatc agttgatgtg ttatcgggga atccgcagca ataaccaaga      3840
     caattgggac tgtgacattg agttaccaga tataatgagc accgacgtat cgccgagcga      3900
     tgtatcccat gctgctggtg tggagagcga acccgaccag atggttgccg ccagcaatca      3960
     ggatgggggg gaaggggatc cgtcaggatc accctcacat gatgcatcag cggtaggggg      4020
     ctcattaggt tcggcggtgg tagaacgtgg taacccaagt tcgaggttat tgctacgaag      4080
     tctaccaaaa ttggattatc gcagtttctt ttaaatgttc caatatttaa ttgtgtgatt      4140
     ttgttatatt tcgtattaag tacttcacta gggggaggaa a                          4181
//
ID   Gypsy-53_MSe-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-122
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 979-979 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
SQ   Sequence 122 BP; 29 A; 30 C; 31 G; 32 T; 0 other;
     tgttatgtat gtatacgtgc gtaggctata ggtacatgcg ttcacgctgc gctgtgacgc        60
     agcgccaata aatcagtgtg ctagtaaccg gcctttgatt cacacctgtc cgagacgcaa       120
     ca                                                                      122
//
ID   Gypsy-53_SiCu-I repbase;    DNA;    INV; 4484 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4484
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5073-5073 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4311
FT                 /product="Gypsy-53_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPKKAEPAKASTSTASLTEEDGYETVSSDTTEVITQ
FT                 EDSPPKSTASSTRRTAPPKPRKRRSNPKITVPGSTRSAPPPPNPKPRKKST
FT                 TMPTSTSSIGSLQPFDSSVDDFEIWEGTFQSFLAANSLDSAAGSSDEKRCH
FT                 GIFLSSIGIKNYALLTSLCAPTALSAVTLKDLIEKMKKHFKPAPKAIAERY
FT                 KFMGRRQRHGESVSQFLASLRELATNCKFKSNLENRLRDQLIFGLLSERLQ
FT                 RTLFAKEDDIKLDEVLQLATSMETAEASTALIRQQTSDQVTSEQSVHKTNS
FT                 NRNPKQQQSSKHDRSPPVSPETQQQGKSNXXKGXNNYRQQFNRYPNRNYEQ
FT                 RTSCQGCGSSKHIFRRDCPHRDVTCHACGKTGHFAHLCKSSPRPQQRNQQH
FT                 SAPAATNSVQLDSVVTDLRAISSVHTTKEEIHLEVEVNGVPTSMELDTGCE
FT                 TSILSVDFWKQLGSPPLHKSQHVFRTYTKELFYPIGDLPCTIKHNNQTVIL
FT                 NMPVSPGNSLFGRNLLKMIKINWSNVQCKLMTNSVHSATSVNDSLNSLLSE
FT                 FEDIFTAPTSTDRIKNFQARIHLKEDATPKFLKARPLPYAVRTKVDQELDV
FT                 MEKCGYISKVDHSDWASPLVVVAKPNGKVRITGDFKSTVNSQLNITQYPIA
FT                 APDDIFAAVSGGTTFSKLDGTNAYHQMEVAPECRKFLVINTHRGLYQYNVL
FT                 PQGVASSPAIFQAFSDIMLRGIDMTGTYIDDTLTSGKTESEHLSNLKTIFH
FT                 AMRKYNYKLSKDKCEFLCKSVKFLGHIVSQSGIATSPEKIQDMVQLKVPSD
FT                 VSQLSSFLGLIQFYAKFMPNLSNLVAPLYRLTRDNVEWDWCQSCQIAFDKV
FT                 KQILVQAPVLAHFDPKLPIGIAADASATGLGCVLFHKYADGTERPISFASK
FT                 LLSETERNYSQIEKEGYSIVFGIKRFFKYLCARPFILVTDHRPLLKIFGNK
FT                 SQLPPYVATRLHHWSLFLSQFQYQVQYRKSAEHGNADALSRLTINPPTPNF
FT                 HIEEVINQIANDKLQLLPVTASAIRLSTSRDPVLAKVMQLCLYGWPTKLRP
FT                 EDQLLQPYYLRKEELSVVQGVLQWGIRVVIPSCLQSKVLQQLHECHFGVVK
FT                 MKALARQHVWWPQIDMQIEDTARSCSLCQSNAPSPASAPLHPWQYPEKPWQ
FT                 RLHADLAGPLNGNMYLIVVDAHSKWPEVYNMHNDTTSPAIMAQLAESFSRF
FT                 GIPQQLVTDNGRQFTSGEFELFCKSNKINHILCSPYHPRSNGEAERFVRTF
FT                 KSAMRATDLPPGLRLTRFLLNYRSTPHATTGISPAELLQHRKLRTLLDLLH
FT                 PDISANVQASQQQQEANYNQRVKMRTFSPGQPVWVRSFSKGEEKWSSGSVI
FT                 RAHGPVSYAIQIGDRQYRRHVDHVRAANPNEAVPPSGSSQLIPSPKP"
XX
SQ   Sequence 4484 BP; 1288 A; 1226 C; 860 G; 1106 T; 4 other;
     ttggcgacga ggttgtgtga tctcaactca ccccatagcc cagtgctaca gaaaaaagtt        60
     taagtttttc ggcgtggtcc catgcctccc aagaaggcag aaccagcgaa agcatctaca       120
     tctacagcaa gcttgacaga agaagacggg tacgaaaccg taagtagtga taccacagag       180
     gtaatcaccc aagaggattc tcctccaaaa tctaccgctt cctccaccag aaggacagct       240
     cctccaaaac caagaaaacg tcgaagcaac ccgaaaatca cagttccggg ttccactcgc       300
     tctgcaccac cacctccaaa tccaaagcca cggaagaaat caacaacaat gcccacctcg       360
     acatcatcca taggcagtct tcagccgttt gactcatcag ttgacgattt tgaaatatgg       420
     gaaggcacct tccagtcctt cctcgctgcc aactcattgg actctgctgc aggatccagt       480
     gacgagaaga ggtgccatgg aatttttctt tcctctattg gaataaaaaa ttatgccctc       540
     ctcaccagct tgtgcgctcc caccgccctg tcagccgtga ccctgaaaga cctcatcgaa       600
     aaaatgaaga agcattttaa acctgcacca aaagctattg ccgaacggta caagtttatg       660
     ggcagacgac agcggcatgg agaatcagtc tcccaattcc tggcttccct ccgagaactt       720
     gcaactaact gcaaattcaa atccaacctg gaaaaccgtc tacgcgacca gctaattttt       780
     ggtttgttaa gtgagcgctt acagcgcaca ttatttgcta aagaagatga tataaaactt       840
     gatgaagttt tacagcttgc cacctccatg gagactgcag aagccagcac ggccctgatc       900
     cgacaacaga catccgatca ggtcacttca gaacagtcag tccacaaaac taacagcaat       960
     aggaatccta aacagcagca gtcttccaaa cacgacagaa gccctcctgt ttctccagag      1020
     actcaacagc aaggcaagtc caattwtcam aaaggtwcma ataattatcg acagcaattt      1080
     aaccgttacc ccaacagaaa ctatgagcag cgcacctcat gccaaggttg tggctcctcc      1140
     aagcacattt ttcgtcgtga ctgtccccac cgtgacgtga catgtcacgc ttgtggaaaa      1200
     acgggacatt tcgcacatct ctgcaaatcg tccccccgcc cgcagcagcg taaccaacaa      1260
     cactcggccc cagcagccac caactcagtt caactcgact ccgtcgtcac cgacctacgt      1320
     gccatctcct cagtgcacac aacaaaagaa gaaatccacc ttgaagtaga agtgaatggt      1380
     gtccccacct ccatggagct ggacacagga tgcgagacaa gcatcttatc agtcgatttc      1440
     tggaaacaac tgggatctcc tcccctccac aaatcccaac acgtcttccg cacctacacc      1500
     aaggagttat tttatcccat tggggatctc ccgtgtacaa ttaaacacaa caatcaaact      1560
     gttatactca acatgcccgt aagtcctgga aattcattat ttggcagaaa tctgctcaaa      1620
     atgataaaaa taaactggtc taatgttcaa tgcaagctca tgactaatag tgttcacagt      1680
     gctacgagtg taaatgactc gctaaattct cttctttctg agtttgaaga catttttaca      1740
     gcgccgacct caactgatcg aatcaagaat ttccaggctc gcatccacct caaagaagac      1800
     gccaccccaa aattcctcaa ggctcgtcct ttaccgtacg cagttcgtac gaaagtcgac      1860
     caggaacttg acgtgatgga gaaatgtggt tacatttcaa aagttgatca cagcgattgg      1920
     gcatctcctc tcgtcgtagt tgccaaacca aatggcaagg ttaggataac tggggacttc      1980
     aagtcaacag tcaactccca gctcaacatt actcagtatc caattgcagc accagatgat      2040
     attttcgccg ctgtcagcgg tggaaccaca ttttccaaac tggatggtac caatgcatac      2100
     caccaaatgg aagtcgctcc agaatgccga aaatttttgg taatcaatac ccaccgtggg      2160
     ctctatcagt acaacgtctt accacaaggc gttgcatcat ctcctgctat cttccaagca      2220
     ttttctgata ttatgcttcg tgggatagac atgacaggta cctacataga tgatactcta      2280
     acttctggta aaactgaatc tgaacattta tcaaatctga aaactatttt tcatgccatg      2340
     cgaaaatata actataaatt gtcgaaagac aaatgtgaat ttttgtgcaa aagtgttaag      2400
     tttttagggc atatcgtttc acaatcagga atcgctacta gccccgagaa aattcaagac      2460
     atggttcaac taaaagtgcc aagtgacgtt tctcagcttt catctttcct gggcttaatt      2520
     caattttacg ccaagtttat gcctaatttg tctaatttag ttgctccatt atacagactg      2580
     acaagggaca acgtagagtg ggactggtgc cagtcctgtc aaattgcatt tgataaggtc      2640
     aagcagatcc tagtccaggc acctgtgctc gctcattttg acccaaaact gcccattgga      2700
     atagccgctg acgcttccgc caccggtctc ggttgcgtat tatttcataa gtatgcagac      2760
     ggaactgaac ggcccatttc ctttgcttca aaactcttgt cggaaaccga gcgcaactac      2820
     tctcaaatcg aaaaggaagg gtattctatt gtttttggca taaaacgatt ttttaaatat      2880
     ctttgtgcac gcccgtttat actagtaacg gaccaccgtc cgcttctcaa gatatttggg      2940
     aacaagtccc aactgccgcc ctacgttgcc acacggttac atcactggag ccttttcttg      3000
     agccagttcc aatatcaggt gcagtaccgg aaatcagcgg agcatggaaa cgcagatgca      3060
     ctttcacgtt taaccataaa cccgcctact cccaattttc atatcgaaga agtcatcaat      3120
     caaatagcaa atgacaagtt acaactcctt ccggtcactg catctgcaat tcgtctatca      3180
     acgtcccgcg accctgtact tgccaaagtc atgcaactgt gcctatacgg ctggcccacc      3240
     aaattgcgcc cagaagatca acttctccag ccatactatc tccgaaaaga agagctatca      3300
     gtagtacaag gtgtactgca atggggaatt cgtgtcgtga ttccctcatg ccttcagtca      3360
     aaggtcctac aacaactcca cgagtgtcat tttggcgtgg tcaaaatgaa ggcacttgca      3420
     cgacagcatg tatggtggcc ccagattgac atgcaaattg aagacacggc tcgctcctgt      3480
     tcattatgtc agtcaaatgc tccaagccca gcatcagctc cactccaccc atggcaatac      3540
     cctgaaaaac cgtggcaacg actccatgca gatttagccg gccccctcaa cggtaacatg      3600
     taccttatcg ttgttgacgc ccattcaaaa tggccagagg tttacaatat gcacaacgat      3660
     accacgtccc cagcgatcat ggcccagttg gcggagtcgt tctctcgttt tggtattcct      3720
     cagcagctcg tcacagataa cggccgccaa ttcacgtcag gggagttcga gctattttgt      3780
     aaatctaata aaattaacca tattttgtgc tctccttatc accctaggtc aaatggtgag      3840
     gctgagcgat ttgttcgcac tttcaagagt gcaatgcgtg ccaccgacct gcctcccggc      3900
     ttgcgactta ctcgtttcct actcaactat cggtccactc cccatgctac tacaggcata      3960
     tctccagcag aacttctaca gcatcgtaaa ctccgcacct tgctggatct ccttcacccg      4020
     gatatctccg caaacgtgca ggcatctcaa cagcaacaag aagctaacta caaccaaaga      4080
     gtcaagatga ggacattttc tccaggtcaa ccagtatggg tacgctcatt ttccaaaggg      4140
     gaagaaaaat ggtcatctgg aagtgttatc cgcgcccatg gcccagtctc ctacgcaatc      4200
     cagatagggg atcgccagta tcgtcgccac gtggatcatg tgcgagcagc aaacccaaac      4260
     gaagcggttc caccttcagg atcatcacag ctaattcctt ctcccaagcc ataagtatcc      4320
     accttccttt ctttccttct cctctaaatc aatttaacct tcacaaggtc tctcggtcat      4380
     caacatccaa cgaacaacgc cttcctttgg agcagttcac catttcgtat aacctctagc      4440
     tttttcttat ttaaaactaa tgtttaaagt taggggaaag taaa                       4484
//
ID   Gypsy-53_SiCu-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-256
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5130-5130 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 256 BP; 68 A; 61 C; 30 G; 97 T; 0 other;
     tgtaaaatat ctttctattt tacatgtcgg ctaccatatt aaatagccga catattgtcg        60
     cctttacaat tatgtatatt tttagagctc ggcttcaccg tgctcaactc atctttataa       120
     tagtgcattt cttgtatgat cactcattcc tattctggac tctgtcatta aaagtcaaag       180
     tcaaactact ctctcgtctt ctctctcaca gcactcattc tcacttatca tagatctgca       240
     ttgagcatat cttaca                                                       256
//
ID   Gypsy-53_SpEx-I repbase;    DNA;    INV; 5701 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5701
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4120-4120 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           964..5532
FT                 /product="Gypsy-53_SpEx-I_1p"
FT                 /translation="MNSDEAMTPEGSPTRKDERRRKRKRSSSKAAAKSKRA
FT                 KKRSRRRRKQSSSSSSSSSESPRSSRSSNKRRSKEGGSWSTKEVLDIFNTL
FT                 QEHKSKTNNLNNNLLNNVIPEFDPSSKTQNIDCWVRKVNECAVIYEWNEKQ
FT                 TIHFALQKLSGLAKKWFEALPSVVFSWSEWQDKLIRAFPNEQNYGRLLEEM
FT                 LARTTRSSESLREYFYDKLALLNRCEIKGKKAVDCIIHGILDKSIRSSAQA
FT                 LTCNEPEDLLNFLSSQRPILENNTFNRKRSDNMTVRTGNTATPSSESSVTC
FT                 FNCRSKGHPYFRCPKPLIKCLKCQRVGHNNDNCKLEPLVLRNEPKQADNQD
FT                 RQILTISTFNNSSDKFYKTVKVNNKSLIAFIDFGSECSLIRESDARSLNLT
FT                 KNLTELPVIKGFGNSKVFPVYRSNVDLKLDEVEVNVEVLVVSNQFLQSALL
FT                 IGQNVTELPCVTVFKNSQQLTFYQSPDTDTIIQPVKCLKLNVDNDTDITLS
FT                 GLVEVTASDVGYCGDIYIEGYCNCEPRKEHYLHQGVYRVVDGKCCLPVTNL
FT                 SGRNLTLSKNCPIAKGACFVEKSITYTNRVTKDSSEYEPLLISDIKVGPQI
FT                 DKETLCRLHSLLLNYRDCFAFNLGEIGCINSTEMKIDLLDDKPIVYRPYRL
FT                 SFSERGQVREIIDDLLQNDIIQESNSNYASPILMVKKKTGEHRLCVDYRAL
FT                 NNKTRKDCFPLPIIDDQLTNLSGNRFFTSLDLASGYYQVPMAEESRPLTAF
FT                 VTPDGHYEFKRMPFGLANAPAVFQRLMNAMLGSKRHESAMAYLDDILVPSV
FT                 TLEEGFERLEDVLKLLRQNGLTLKLSKCRFFDNSLDYLGYEISAEGIRPNE
FT                 NKILAVKEFPVPQNVHEIRQFLGLAGYFRKFIRSFGEIARPLTNLLKKGNV
FT                 FKWTDEESHSFTTLKEKLIDRPILALYNPNFETELHTDASSLGVGGILMQW
FT                 QPEPRALKPIAYFSRQTTPEERHLHSYELETLAIVCSLKKFRVYLLGIEFK
FT                 IMTDCNALRTTLTKRDLIPRIARWWLLISEFNFSIEYRPGIRMAHVDALSR
FT                 NTKLTPEDIDNSAVTVYSIETDNWLLTLQMTDPDISRIYKILKPESDEEAK
FT                 DIRKNYVVKNSRVYRRVDDKLCLVIPRNARWQICKSNHDDAGHLGVSKTTE
FT                 KIQSVFWFPKLRRFVKKYVESCIKCAYNKDNTSRHKNGQLYPIEKVSIPFH
FT                 TIHIDHLGPFVKSKNGNVYILTIVDGFTKYLFVRAVKDTKTKTTVKVLLNI
FT                 FYDFGLPSRIISDRGTSFTSAAFKSFCDTHGIKHVLNAVACPRANGQAERY
FT                 NQTILSSLAKYSDGEDERNWDMCLGKIQWGINNATNSTTQKTATEALFGTR
FT                 LKDSLSNMLDVNNEPHSNFTEVRQEICTNIESSQIKQKQNYDQNRVAAPTY
FT                 KEGDLIKITRTNFNNKGNSTKLMSKFVGPFKIAEVLGNDRYKIVEIPGFSK
FT                 RKNKFDSVVAVDRIRPWININVSEQNDNVDAMANSSSSSDSESNXSDNELP
FT                 QSQSESK"
XX
SQ   Sequence 5701 BP; 1849 A; 972 C; 1183 G; 1693 T; 4 other;
     gttcagaagt gggatcagga cccaatctaa ggtacgtaaa agtgctttat atgattatta        60
     attaattaat taattttatg actgtttaga agttgagcaa gccacgtggg cgcttttatt       120
     aggttagata tgcctaaata ggaagccaat gtgctttagc tactagagct gtgtatgcct       180
     atgagcatgt gtgcttgtgt cagaggttat gtgtgcctac aataggaacc aagtgtgctt       240
     tagctactag aggctatgta tgcctattga gccatgtgtg cttagttgtt agaggttatg       300
     tgtgcctaca ataggaagcc aagtgtgctt tagctactag aggctatgta tgcctattga       360
     gccatgtgtg cttagttgtt agaggttatg tgtgcctaca ataggaagcc aagtgtgctt       420
     tagctactag aggctatgta tgcctattga gccatgtgtg cttagttgtt agaggttatg       480
     tgtgcctaca ataggaagcc aagtgtgctt tagctactag aggctatgta tgcctattga       540
     gccatgtgtg cttagttgtt agaggttatg tgtgcctaca ataggaagcc aagtgtgctt       600
     tagctactag aggctatgta tgcctattaa gccatgtgtg cttagttgtt agaggtcatg       660
     tgtacctaca ataaaaagcc gagtgtgctt taataagatc ctaagtatgc atatagaatg       720
     tttatgtctt tagcagacat taacaggaaa attagattat tatattttgt ttttaatcaa       780
     ggatgattaa tttagaaaat aaatgaatta cgtttaattt ttatttaatt aaatatacac       840
     attttttatt actattttat tttattacat ataccaaatg aaaatcaagt tttattatta       900
     acacatttaa acaataaatt gatatactga catgattaca atgatattct attcttttga       960
     ggtatgaatt ctgacgaagc gatgactcct gaaggctcgc ctactcgtaa agatgagcgc      1020
     cgaagaaaac gtaaacgatc ctcctccaaa gcagcagcta agtctaaaag agccaaaaag      1080
     cgatcaagga ggagacgtaa gcagtcgtcc agctcctcct catccagcag tgagtcaccc      1140
     cgtagttcac ggagttcgaa taagagacga tccaaggagg gtggcagttg gtctactaaa      1200
     gaggtacttg atatctttaa tacccttcag gaacataaaa gcaagacaaa taatttaaat      1260
     aacaatcttc tcaacaatgt gataccagaa tttgatccgt caagtaaaac tcagaatatt      1320
     gattgttggg ttaggaaagt aaacgaatgt gccgtaatct atgaatggaa cgagaagcag      1380
     accatacatt ttgctctaca aaaactttct ggtctggcaa agaagtggtt tgaagccctt      1440
     cctagtgttg ttttcagttg gtcagagtgg caggacaaac tcataagagc tttcccgaat      1500
     gagcaaaatt atggtcggct tctcgaagaa atgttagctc gcactactcg tagtagcgaa      1560
     agtttgcgtg agtacttcta cgataagtta gcgttgttaa acagatgtga aataaaaggc      1620
     aaaaaggccg ttgattgtat tatccacgga atactagata aatctattcg aagcagcgca      1680
     caggcactga cttgtaatga accagaagac ttattgaatt ttctaagctc ccaacgtccc      1740
     atattggaaa ataacacatt caatagaaaa cgtagcgata atatgacagt tcgaacgggt      1800
     aacactgcaa caccctcgag tgaaagttcg gtaacttgtt tcaattgccg ctcaaaagga      1860
     cacccttact ttcgatgccc caaacctctt attaaatgtt taaaatgcca acgggtaggc      1920
     cacaataatg ataattgtaa actagagcca ttagtcttac gaaatgaacc caaacaggca      1980
     gataaccagg atcgacaaat attgactata tctaccttca ataacagcag cgacaaattt      2040
     tacaaaaccg ttaaggtaaa caataagtcc ttaattgctt ttattgattt cggcagcgaa      2100
     tgtagtttaa tcagagaatc tgatgctcga agtttaaatt taactaaaaa tttaacagag      2160
     ttgccagtaa tcaaagggtt cggcaactct aaagtttttc cagtatatag gagcaatgtt      2220
     gatctgaaat tagatgaggt tgaggttaat gttgaggtat tagtagtcag caatcagttt      2280
     cttcagtcag ctttacttat aggtcagaat gttactgaac ttccttgcgt aacagtattt      2340
     aagaatagcc aacagttaac gttttaccag agccccgata ccgatactat aatacagccg      2400
     gtgaagtgtt taaagttaaa tgttgataac gataccgata ttacattatc aggattagtc      2460
     gaagttaccg catccgatgt tggctactgt ggagatattt atattgaagg ttactgcaat      2520
     tgtgagccta ggaaagagca ttatttgcac cagggagtgt atagggttgt tgatgggaag      2580
     tgttgtttgc ctgtgactaa tttatctggt cgaaacctta cattatccaa gaactgtcct      2640
     attgctaaag gagcttgttt tgttgagaaa agtatcactt atacgaatag agtaacgaaa      2700
     gatagttcag aatatgaacc tttactaata tctgacataa aagttggtcc ccaaattgac      2760
     aaagagacat tatgtagact tcattcactt ttactcaatt atcgtgactg ctttgcattc      2820
     aatctaggag aaattggttg tatcaactca actgaaatga aaatagactt attagatgat      2880
     aaacccatag tttaccgacc gtacagatta tctttttcgg aaaggggtca ggttagggag      2940
     ataatmgatg atttgttgca aaatgacatt atacaagagt ccaattcaaa ttatgctagt      3000
     cctattctga tggtgaagaa aaagacaggg gaacatcgtt tatgtgtcga ttatagggct      3060
     ctgaataata agactaggaa agattgtttc cctttgccga taatcgacga tcagttgaca      3120
     aaccttagtg gcaatagatt cttcacatcc ctagatctgg cttctgggta ctaccaggtg      3180
     ccgatggcag aagaaagtcg tccgcttact gcattcgtaa cgccagatgg gcattacgaa      3240
     ttcaaaagga tgccttttgg tctcgcgaat gctccagcgg tatttcagag attaatgaat      3300
     gcaatgctag gtagtaaacg tcatgaatcg gctatggctt atttagatga tattcttgtg      3360
     ccatcggtta ccttggagga gggatttgaa aggttggagg atgttttgaa gttgttgcgg      3420
     cagaatgggt taactttaaa actatctaaa tgccgtttct tcgataattc ccttgactac      3480
     ttaggttatg agatttctgc cgaaggcata cgccctaatg aaaataagat tctagctgtt      3540
     aaagagtttc ctgttcccca gaacgtacat gaaatccgtc agtttttggg actagcagga      3600
     tattttagaa aatttatcag aagtttcggg gaaatagcta gacctctaac aaacttactc      3660
     aaaaagggca atgtttttaa atggacagat gaagaatccc attcgtttac taccttaaaa      3720
     gaaaagctaa ttgaccgacc aattttagcg ctgtacaacc ctaattttga gactgagttg      3780
     catacggatg caagttcttt aggcgtgggt gggatattga tgcaatggca accggagccg      3840
     cgtgccctca aaccaatagc ttatttcagc cggcaaacca cccccgaaga gcgtcacttg      3900
     cattcttatg aactcgagac ccttgcgatt gtatgttcat taaagaaatt tagggtatat      3960
     ttattgggaa tagagttcaa aattatgaca gactgtaacg cccttcgaac taccctaact      4020
     aaacgcgact taataccccg aatagctagg tggtggcttt taataagcga attcaatttt      4080
     agtatagagt accgtccagg catccgtatg gctcatgtgg acgcattgag ccgtaacaca      4140
     aaattaacac ccgaagatat cgataattct gcggtcacag tctatagtat cgaaactgat      4200
     aactggctct tgactttaca aatgacggat cctgatatat ctcgtatata taaaattctc      4260
     aaacctgagt cagacgaaga agccaaagac attaggaaaa attatgtagt taagaatagt      4320
     agagtgtata ggagagttga tgataagctt tgtctagtaa ttcctcgtaa tgcccgatgg      4380
     caaatatgta aatctaacca cgatgacgct ggtcatttag gagtatcaaa gacaaccgag      4440
     aaaattcaat cggttttctg gtttcctaag ttacgtagat ttgttaaaaa gtatgtagag      4500
     tcttgtatta agtgcgccta taataaggat aatacgtcac gacataagaa tggtcagttg      4560
     tatccgatag agaaagtaag cattccgttc cacaccattc acattgacca cttaggtcca      4620
     tttgtcaaaa gcaagaacgg caatgtttac attctcacca tagtggacgg atttaccaag      4680
     tatttgtttg tgagagctgt taaagatacc aaaactaaaa caaccgttaa agtattatta      4740
     aatatttttt atgatttcgg tttaccatcc cgaataatat cggatagagg tacctccttc      4800
     acttcagcag cctttaaatc cttttgtgat actcatggta ttaaacatgt tttgaatgct      4860
     gtcgcgtgtc ccagagccaa cggccaagcc gagagataca accaaactat cttaagttca      4920
     cttgcaaaat attctgacgg tgaggacgaa cggaactggg acatgtgtct aggcaaaatt      4980
     cagtggggaa ttaataatgc cacaaattcc accactcaga aaacagctac tgaagcatta      5040
     tttggaacca gattgaaaga tagcctaagc aatatgttag atgtaaataa tgagcctcat      5100
     tccaatttta cagaagtaag acaagaaatt tgtacaaata tcgaatctag tcagattaaa      5160
     caaaaacaaa actacgatca aaatagagtt gctgccccga cttataagga aggggatcta      5220
     attaaaataa ctagaactaa ttttaataat aaaggtaata gtactaagtt aatgtcaaaa      5280
     tttgtaggcc ccttcaaaat agccgaagtt ttgggcaatg ataggtataa aattgtcgaa      5340
     atacctggtt tcagtaagcg caagaataaa ttcgatagcg tagtagcagt agacaggatt      5400
     cgaccgtgga tcaatataaa tgtgtccgag caaaatgata atgtagatgc aatggctaat      5460
     agcagtagtt cgtctgatag cgaaagtaat maaagtgaca atgaactgcc acaaagtcaa      5520
     tctgagtcca aataatagcc gaatgtaatg aatgtttaat tatacatawa atatataggt      5580
     atatgatttk ttatatgatt tgttattgaa ttttttattt gatatatgtt tgggtttata      5640
     aaattattct atgtgattat ataccgtgcg tcaggagatc gcacgtagtc ggacggccga      5700
     a                                                                      5701
//
ID   Gypsy-53_SpEx-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-451
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4182-4182 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 451 BP; 146 A; 52 C; 86 G; 167 T; 0 other;
     tgtaatgaat ttatgatttt ttaatattgt tttacaattt gtcggttaaa tcaagtctat        60
     ttttaaaaat atttatattg aatttacaat acggtttgta tttgatttat tatgttttaa       120
     tcaatataat cgatttatgt aagttagtcg aatcaaaata ccattactct attagtctat       180
     gaagaacgaa tagattgatc gggacatttc gttcggtcgg gaacgaaatg tgttgtcggt       240
     tattttttaa aagaagtgat ggcattctga tcggagatct cgactgagac agacgtgata       300
     gtcattacga ttgtgttaaa agccgtgcaa tagctactgt gctgtataat tgtataagaa       360
     tataagccag agtgattgaa ataatataat cgttgttacg aagcaagcag ttttattata       420
     cacctgaatc gaattgtgag agttcgtcac a                                      451
//
ID   Gypsy-53_TrVa-I repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4375
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 298-298 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           164..4309
FT                 /product="Gypsy-53_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSTSSSDYENADDVELTLRSRKIKRTANPTSEEINAV
FT                 IGTGVRKKMPNSVDIRFDLNNNEEWDIFIERLELLFESQEVEATKQVAELL
FT                 TRVSANTYSLIRKLSAPGKPKDLTFKQICDLVSAHLNPKESQVLVRQKFYA
FT                 LKQTKNESINNFVARLRQSAMECKFTSSDEAVRDQFVSGIADQQTRIELFK
FT                 EDTLDCDKAIKIAQARESAHQNSLGMENLKLSDNNQSCNQSDVNYVKPSAS
FT                 GATFNSRGRGQRYQQYHQRSGRGNQRYASTSTSTKRMDKRHSGGQREYYGK
FT                 RQQQQHRPNSNSGNGNNNNNSDNNLKSNVVCYCCGEPNHFAKHCIFRFKSC
FT                 SYCKRKGHISKACLHSKNNKEKLACNKLEEDKSENDDYDFFLIRHSVNFNS
FT                 SPDEEAPPMFLNVEIENRDFQMEIDTGSYFSIISEKIKNECFPNKQLKPTN
FT                 VNLFSYNQTQMKCIGQLSDLNVKYNNTTCQLTLLVMSGSGVSLIGRLWLKF
FT                 FGLWPLKLPKIQSTETSQNHHVDTLVENFKSKFPRLFSNTPGNFNGRKITL
FT                 VFKADTQPIQLKPYRVPLALEEKTEXEIKRLVKMGNLEAVNVSKWATPVIP
FT                 VLKGNGEVRLCGNFKLTVNPCLVIKRQPLPTKDEIFAKLQIGSKWSQIDLS
FT                 HAFMQFTVDEKSRDALTIITKVGLFRYVKLPEGISSSPGECQDIVFSLLKH
FT                 IPHTVVYIDNIYCTGKTDKEHMVVITDVLEALNNADLRINVGKLELFKLQL
FT                 DIFGYTLNKDGIRPSSSKTEAILKIPAPTNLKEIRTLLGIINFYENFLEKR
FT                 AEKLKPLYDVIKSDVFYWNHDCETSFQWIKAELVSDKVLALFDPTKKIILA
FT                 CDASYHGLSAILSQRDENNVEKPTAYASKKIPDNELHRAIIDKEAAAIVFG
FT                 FKKFYQFIYGNHILLRTDHEPLRFIFGKSKNVSLTIQNRLQRWSYYLSSFN
FT                 YTIEVIKSKANGNCDTLSRFPIEDNTPVFDTEFSTVKFIEKETQIVNCKVI
FT                 AKETAKDPVLCKIVKYVLFGWPNDNENPEKIENSFYCKRLELGIEENMLLW
FT                 GTRIVIPQALRELMLIKLHESHFGVVKMKQTARSYFWWPNLDSDIEDFVKK
FT                 CTICVKHGKNPPKTSFCKWPYPATPWERIHTDLLGPFYGDMYIIVIDAHSK
FT                 WPEVGNLKSNTTSLSIIKFFKTVFARFGLPKHLVSDNGRQYISEDFENFLE
FT                 FNNIKHSLTAPYHPATNGAAENFVGTFKNKVTKIVESGKDVYSAIQLFLFD
FT                 YRTTVHSTTNKTPAKLMLNRELCNRFNLIRVKNPVTEVEEKHLKTDFDVNV
FT                 RPEFEVDEEVFVNEYKNNKIMKVPGKILRQMSPVNFEIELGDKVVKRHVDQ
FT                 IIKIKRSTRVKRKVNRLNV"
XX
SQ   Sequence 4375 BP; 1585 A; 750 C; 813 G; 1225 T; 2 other;
     ttggcgacga ggataaaagt atcgattacg cgaattggtg cgcgaatttt ttacgcgaaa        60
     ttgtgatttt agcaaattat agttgcgtcg cgaaatcacg tgtatgggtg tatggcgaca       120
     tttttattgt gttccgtgaa agttatatct ttttacatct cgaatgtcaa ctagttctag       180
     tgactacgaa aatgcggacg acgttgaact aaccctacgc agtcgaaaaa taaaaagaac       240
     ggctaatcca acatcggagg aaattaatgc ggtaatcgga acgggagtta gaaaaaagat       300
     gcctaattcg gtagacatca gatttgacct caacaataat gaagagtggg acatttttat       360
     cgaacgttta gaattgttgt tcgaatcgca agaagtcgag gcaaccaaac aagtggccga       420
     actccttacg cgcgtcagtg ctaatactta ttccctgatt agaaaattgt cagcgcccgg       480
     aaaacctaaa gatttgacat ttaaacaaat ttgtgattta gtctctgctc atctcaaccc       540
     aaaagaatca caagtgttag tgcgccaaaa attttacgcg ctcaagcaaa ccaaaaatga       600
     atccatcaat aacttcgttg ctcgtctcag gcaatcagca atggaatgca aattcacgtc       660
     atcagatgaa gctgtccgcg atcaattcgt atcgggaatc gcagatcaac aaacacgcat       720
     cgaattgttc aaagaagaca ccttggattg cgataaggcc atcaaaatcg cccaagcccg       780
     agaatccgct catcagaact ctctaggcat ggaaaacctg aagctgtcag ataacaacca       840
     atcttgcaat caatccgatg tcaattatgt gaagccgagc gctagcggtg cgactttcaa       900
     cagcagagga agggggcaac gttatcagca gtatcatcaa cgttctggca gaggcaatca       960
     acgttacgcg agcacatcga cctcaacgaa aagaatggac aaaagacact ctggagggca      1020
     amgagagtac tacggcaagc gtcaacaaca acaacatcgt ccaaactcga acagcggaaa      1080
     cggaaacaat aacaataaca gtgacaacaa tctcaaatca aatgtcgtat gctactgttg      1140
     cggtgagcca aaccattttg ccaaacattg tatatttaga tttaaatctt gttcatattg      1200
     taaacgaaaa ggtcacatca gcaaagcttg tctgcatagc aaaaataata aagagaaact      1260
     agcttgtaat aaattagagg aagacaaatc agaaaatgat gactatgatt tttttctgat      1320
     taggcattca gttaacttta attccagtcc agatgaagag gcacctccca tgttcttaaa      1380
     tgttgaaatc gaaaataggg attttcaaat ggaaattgac acaggttcat atttttctat      1440
     aatttcggaa aaaattaaaa atgaatgttt tcctaataag caactaaaac ctaccaacgt      1500
     taatttattt agttacaatc aaacacaaat gaagtgcatt ggacagttat cagatttaaa      1560
     cgtcaagtat aacaatacaa cgtgtcaatt aacattacta gtgatgtcag gttcgggggt      1620
     tagtcttata ggccgattgt ggctcaaatt tttcggactg tggcctctta aattacctaa      1680
     aattcaatca actgaaacgt ctcagaatca tcatgtcgat actcttgttg aaaattttaa      1740
     aagcaaattt cccagattat tttcaaacac gccgggaaat ttcaacggta gaaaaataac      1800
     tttagttttc aaagcagaca cgcaaccaat tcaactcaaa ccatatcgag ttccattagc      1860
     gttagaagaa aaaacagaaa akgaaataaa aagattagtg aaaatgggta acttggaagc      1920
     agtaaatgta agcaaatggg caactccggt tattccagtt ttaaaaggta acggagaagt      1980
     acgtctttgt ggtaatttta aattaactgt taatccttgt ttagtaatta agcgtcaacc      2040
     attgccgaca aaagacgaaa tctttgccaa attgcaaata ggttccaaat ggagccaaat      2100
     agatttaagt catgcattta tgcagttcac agtggatgaa aaatcaagag atgctctgac      2160
     catcatcaca aaagtaggct tatttaggta cgtcaaactg cccgaaggaa tttcgtcctc      2220
     accaggcgag tgtcaggaca ttgtattttc tcttctaaaa catattccgc acactgttgt      2280
     gtatatcgat aatatttact gcacgggaaa aactgacaaa gagcatatgg tagttataac      2340
     tgatgtcctt gaagcactaa acaatgctga tttaagaata aatgttggta aactggagtt      2400
     atttaaatta caattagata tatttggata tacgttaaat aaagatggta ttcgaccatc      2460
     ctcttcaaaa actgaagcaa ttttaaaaat acctgctcca acaaatctaa aagaaattag      2520
     aacattactt ggtatcatca atttttatga aaatttttta gagaaaaggg cagaaaaatt      2580
     aaaaccatta tatgatgtca tcaaaagtga tgttttttac tggaatcatg attgtgaaac      2640
     ttcctttcaa tggatcaaag ctgagttagt gtcagacaaa gtgttagcat tatttgatcc      2700
     aacaaaaaaa attattctag catgtgatgc aagttatcat ggactttccg cgatattgtc      2760
     tcaaagagat gaaaataatg tagaaaaacc aactgcttac gcatctaaga aaatccctga      2820
     taacgagctt cacagagcga tcatcgacaa ggaagctgct gcaatagttt tcgggtttaa      2880
     gaaattttac cagtttattt atggcaatca tattttactt cgaacagatc atgaaccgtt      2940
     aagatttata tttggaaagt ctaagaatgt gtcgctaaca attcaaaata gattgcaacg      3000
     ctggtcttat tatttatcca gttttaacta cactattgaa gtcataaagt ctaaagcaaa      3060
     tggcaactgt gacacattgt ctagattccc aatcgaggat aataccccag tatttgatac      3120
     tgaattctca actgtaaaat tcattgaaaa agaaacgcaa atagtcaatt gtaaagtaat      3180
     agcaaaagaa acagctaaag atcctgttct ttgtaaaata gttaaatatg tcttgtttgg      3240
     atggccaaat gataatgaaa accctgaaaa aattgaaaat agtttttact gtaaacgttt      3300
     ggaactagga atagaagaaa acatgttatt atggggtaca agaatagtca ttccacaggc      3360
     gttgagagag ttgatgttaa taaaactcca tgaatcccac tttggggtgg taaaaatgaa      3420
     gcaaacagcc cggtcatatt tttggtggcc caatttagac tctgacattg aggattttgt      3480
     aaaaaaatgt acaatttgtg tgaaacatgg taaaaatcct ccaaaaacat ctttctgcaa      3540
     gtggccgtat cctgctacac catgggaaag gattcacaca gatttattag gacctttcta      3600
     tggagacatg tacataattg taatagatgc ccattctaaa tggcctgagg taggcaactt      3660
     gaaaagcaac acaacctctc tcagcatcat aaaatttttc aaaactgttt ttgctaggtt      3720
     cggattgccg aaacatcttg tttcagataa cggcaggcaa tatattagtg aagattttga      3780
     aaatttttta gaatttaata acataaaaca ttctttaaca gcgccatatc atccagcaac      3840
     caatggtgct gcagaaaact ttgtaggaac ttttaagaac aaagtcacaa aaatagttga      3900
     aagtggcaag gatgtataca gcgccattca actgttttta tttgattatc gaacaacggt      3960
     acactcaact acaaataaaa ccccagccaa attaatgcta aatagggaat tatgcaatcg      4020
     ttttaatttg atcagggtaa aaaacccagt aaccgaagtg gaagaaaagc acttaaaaac      4080
     agatttcgat gtaaacgttc gtccggaatt tgaagtagac gaggaagtat ttgtaaacga      4140
     gtataaaaat aataaaatta tgaaagtacc cggaaaaatt ttaagacaaa tgtctccagt      4200
     taattttgaa attgaattgg gggacaaagt tgtaaaacgc catgtagatc aaatcataaa      4260
     gattaagaga tctacgcgtg taaaacggaa ggtaaatcgc ttaaatgttt aaatttttgt      4320
     aataatattg tatttattgt tttaattcaa aaattaaatt ttgtaagggg ggaat           4375
//
ID   Gypsy-53_TrVa-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-53_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-257
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 357-357 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 257 BP; 58 A; 46 C; 61 G; 92 T; 0 other;
     tgtaatgtat gtaaatatgt ggtgccggtg ttggccgcca gagagcgtgg tatacgtgta        60
     gggtgaacga gctgggcggc tgagccggtt cctgcatcat tctcttctct ggattgtatt       120
     cgtatgtgtt cttgagtagt cgtccccggt atccgtaata atgtatacga taagtgatta       180
     ttgaataaac tgactagtat aaatttttta ataattattg ttctcgttat tcctcttatc       240
     cactcgacgt tatctca                                                      257
//
ID   Gypsy-540_AA-I repbase;    DNA;    INV; 5716 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-540_;
KW   Gypsy-540_AA-I; Gypsy-540_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5716
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5716
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3123-3123 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5716 BP; 2185 A; 1021 C; 937 G; 1573 T; 0 other;
     tggcgacgcg tgtctaagtg caccgaatct gcaacactca aagtgataac agtgaagtaa        60
     aaaaaaaaaa aaaaaaaaat catgggttgg ttcacaaatg aagaggtcgt gaacaacaac       120
     gttcctaacg tacccaatgt tcccacagtg acgaacaccc caaccgtgga gcatatatta       180
     acagcgatcg ctgcaataat aatcgtgatc gtggtactaa catacgtaat tgccaagaca       240
     tgcaataaag tattaaacag ccgtatgtcg tcgacagcgc gacgtgaatt cgaactaagc       300
     cgcttgaata acggcgcacc gcgtgtgatc taagtgaagg tagatacaat tggaacccta       360
     caaaaagtga gaatctccaa agaaacagcg ctcactcaaa gtttagaaca ttacaaaaag       420
     tttaaagtaa aaaaaaaaca gtacaggctt ctaccacgcc tagaagtggt aaaaagtgca       480
     aaagaataaa aataagggaa gctgtgccga tatgatcctg taaccagacg aaagacatgt       540
     acgaacgagc gaggatgcag acaaaatcat gcagagaacg agcgaacaga cgatttcaaa       600
     atgacgaaaa gcggtaatta atatatttac tatctattat gttgtgcacc ggatgaaaat       660
     gaattatgtt ataaagagta ttaaatttat tttggatata aaattaaatt attaaaaccc       720
     caaaaatata tattgctatg tcattcgaaa tctttttatc taaagtgtaa ttaccttccc       780
     catcaatcca acacggatca tccgttgatt agtgaagtga gaatatttat tttccccgga       840
     agatagcgat aatgtattat gaatgacgat gaactcataa aatactatac tctattaaag       900
     aatttagaca aaaatgtacg aaagtcaata aataacaaaa acagagcctc cactttggaa       960
     aggcacctaa aagaaatcaa ttttctcatt ctccatttag aaattggaat taaaaaatcc      1020
     aagttgtcgg aagaagtttg ttctgagata atagacgcaa ttaattcagc aaaaaacggg      1080
     ctaacatcca tattgtatac caaattaaac atggctccac caaacgaaac accacaaccc      1140
     acaaacaact ctttcgattt acgcaccgca acagcagtcg tagtcgtcta cgatggcgca      1200
     agtgatggat tgcaagcatt catcgacgct tgcaatctgt taaaagatct gacgacggaa      1260
     gaccatcaac aaatgctgtt gaagtttttg aaaacaagag taaccggcaa agcgcgactt      1320
     ggcttgcccg aaaacatcaa tacatttgat gaatttataa aaaacgtcaa agaaagatgt      1380
     cgtgatacga catctatcga acaaaccatt gtcaaactga aatcaattaa gcagagggag      1440
     aatttagact ctttctgcga gcaaattgag aacatttcca acaaattaaa aaacatatac      1500
     attgaaaaac aaatcccaga aaacgttgcg acagatatgg tcaaaaaggc tgctatcgat      1560
     gccctgatta atggagtttc caaccaggaa acgaagttaa tccttaaagc agggtcattc      1620
     gacagcatta aggatgccat acgaagagtc caagagaatg gatcttcgca aaatcaggcc      1680
     attttaacat tcactggtaa taataaacag agtaagtatg gaaataagcc atctcatttt      1740
     cagggccaca agcaaaaccg tttcaataat aacgacaatc agcaaaattc acataaccgt      1800
     actcagcaac agcaaatttt ttacagaggc aataaccgac ctcgatttca aggcagaggc      1860
     ggacgatacc aaaacaataa tcaaagacaa ttcaacaacc gtcaacactt taaccgaaga      1920
     ggaggtaata gaaaccaggt atatgcattt aactcaatgc cgatgccacc agcgcatatg      1980
     aatcatttcg ctgcagtaac acaaccgcaa ccgtttccgt taggaaatgt gatgccgcaa      2040
     tcagctgcgc cgagaatgca gccacagcaa aatgaatatt ttttagatca agtgtacggg      2100
     agccgagtgc acccgaaccc tcctcaattc tagctattaa tttaaatgct gtaaattttg      2160
     ttactataga agtacaaatg actaattcga aatgcacgct tataatagac agcggtgctg      2220
     atacttcatt gtttaagata ggaaaaattt cggcacttca gaaaataaat ccagctaaga      2280
     agtttagtct cacaggtgtg acagaaggtt ctatggaaac attagctgaa actactacaa      2340
     accttcgatt ccataatggt ttaatagtca atcatacatt tcaaatcgtc ccgaatgaat      2400
     ttccaatccc gaccgatggt atactcggtc gcgatttttt aattaagtat agatgtaatt      2460
     taaattatga tacgtggatt cttaatttaa attttcaaaa tcaatctgta gatattccaa      2520
     tagaggataa ccttaataat gctttcgtta tcccggccag atgcaaagta ataaggcgta      2580
     ttcctctggt taatttcaag gaagatactg tagtactttc ataagaaatc cagccaggag      2640
     ttttttgtgg aaatactatc atatctccgg tgttaaccat tgtaaaattt gtaaatacca      2700
     ctaataagca agttttagtt aataatttta tccctaaaac ggaacctttg aaaaattttc      2760
     tcaaaattga tagtactaag aaagaaggtg tatctaataa gaataaaaga atcaatgaga      2820
     ttctaacgaa cataaacata gaaaatattc cgacagaagc gcggaaacca ttatcaaatc      2880
     taataagaaa tttcgaagac attttctgtc tttcagatga acatctttca actaataatt      2940
     tttattctca aaatattccg ttgagtgata gttctccagt ttatatacca aactatcgca      3000
     cgattcactc acaacacgac gaaattaaca tgcagattca aaagttacaa cgagatgata      3060
     taatagaacc ttcaatatca tcttataatt ctccaatatt gcttgttcct aaaaagtcag      3120
     agggtcaaga taagaaatgg agacttgttg tagattttcg ttagttgaat aaaaaaatac      3180
     tggctgacaa gtttccttta ccccgaattg atgaaatatt agatcagctg ggtagagcta      3240
     gatactttac tactcttgat ttaatgtccg gttttcacca gataccatta gatccagagt      3300
     caagaaagta tacagctttt tccacatcat ctgatcactt ccaatttaaa agattaccat      3360
     ttggcttaaa catcagtcct aacagttttc aaaggatgat gaacatagcc atggcaggtt      3420
     taacgcctga aatagcattt atttacatcg acgatattgt aataattgga tgttcagtta      3480
     aacatcattt aaataattta gctgaagttt tcaaacgctt gagattctac aaccttaaat      3540
     taaacccgtc taaatgcaaa tttttccaaa cagaagtagt ttatctaggt cataaaatta      3600
     ccgacaaggg tattctaccc gatgattcaa aattcaacac tttaattaat tatccaattc      3660
     ctaaaaacgc agatgaagtc agcagatttg tagctttctg taactattat agaaagtttg      3720
     tagaaaattt tgctagtatg gcacatcctt taaaccaact tctaagaaag aatacaaaat      3780
     tttcttggtc cgatcaatgt caaaaagcat tcgattattt gcgatataaa ttgatgtcac      3840
     ctaaaatcct tcaatatcct gatttcaaca atacatttat tctaactacg gacgcatctg      3900
     atataggatg tggggccgta ctttcccaag ttactgagaa aggtgacctc ccgatatctt      3960
     tcgcaagtaa aaaattcact ccaggcgaga agaacaagtc tgtaatattg aaagaattaa      4020
     ctgctataca ttgggctata cattatttta gaccctattt gtacggcaaa agatttatag      4080
     tgaggactga tcacagacct cttgtttatt tattcaagat taaagatcca tcctcaaaac      4140
     taactaggat gcgtcttgat cttgaagaat ttgattttga cgttgtatat attagaggta      4200
     aggaaaacgt tggagccgat gcgctctcac gtatagaaat aacatcagaa catttaaagt      4260
     caaatagtat tttagttgta aatacgcgag cgatgactag aaaagcaaaa catattgtgg      4320
     ataaaacagt gatgagtaag aagcttgatc aacttcaaac ttataccact gaaaaccctt      4380
     ctgaaaccaa aaatatgtta aaactggtta caaccataga taacaattat ttaacattca      4440
     taatttgtaa gaaaactaaa tacatgaaag ttgtcacgca agtacaacaa tcaagaccta      4500
     atggaagtca agctctagag tttgctcttt caaaattaga aaatcaagcc aaggcattaa      4560
     aaattgacac aatagcaatt gcaattgacg atgaaatatt taaaagtttt cctatgaatg      4620
     agtttaaaga aaaggccaat aaaattttga aagatttgca aatcataatt tttaaaccac      4680
     agaaagtcat tagtgatttt caagttatac aaaacataat gaaaactcat catgaaacac      4740
     ctacaggagg acacataggt caaaaaagac tgtacctaaa actccgcgaa atttatgtgt      4800
     ggaaaaacat gaaaaaaatt attgcagaat tcgttaagtt atgcgaattg tgcaagaaaa      4860
     ataaaattac gattcatacg agagaaaaat tttcagttac ttttactcca actaaacctt      4920
     tcgaagttgt ctcaatagac acagttggac cccttcccaa aagtaatcat aacaatagat      4980
     acgcattaac gtaacaatgc gaccttacca aatacgtagt tctaatacca ttacaaacta      5040
     aggaagcaaa tgcaatagca cgagctttaa ttaacaattt tatactaatt tacggtaatt      5100
     tcttagaatt aaaatccgat caaggaactg aatttaagaa tgaagtcctt gatcagattt      5160
     gtcatttatt acatattaaa caaacctttt caactgccta ccatccacaa acgattggtt      5220
     cgttagagag aaatcacaga tgtctgaatg aatatctgag atttttatat attacctcag      5280
     gaactacaaa ccgatagagt cgaacctgtg tataatttgg aagcttacaa aaacgaactt      5340
     agatataaaa tccaaaaatc aaattgtttg acaagagaaa aattaattgc acaaaagtta      5400
     atgagaagtc aaaaatcaga acaaacatca aatccgattg aaatacaaat aggagatcaa      5460
     gtttacctta caaacgaaaa cagaagaaaa atagattcat tttataatgg accatattta      5520
     gttacacaaa tagataacca aaattgcaaa attcaacatc aaacaacgaa taattcttta      5580
     attgtccata aaaatagatt gataaaataa gtaattttgt gaatggagtc tggatcaata      5640
     gaataaccca atcaaactta taaaactgtt ttagaatgtt ttcgttgtac tacaccattc      5700
     ttttaaaggg tggagg                                                      5716
//
ID   Gypsy-540_AA-LTR repbase;    DNA;    INV; 538 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-540_;
KW   Gypsy-540_AA-I; Gypsy-540_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-538
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-538
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3164-3164 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 538 BP; 175 A; 116 C; 90 G; 157 T; 0 other;
     tgtagtatac cgtaaatgca tctcccaaaa ccagatgtta atgtttccca cgatcaacaa        60
     tttctgaata ccaaagagcc aaataaattg tcttgcatcg acagttattg tttccacttg       120
     agttcacgtt tccttaagaa acatgttttc caaaaccaaa cctagaatga gtccacgcat       180
     ccgcgttgtg gatcatattg caaacctttc cataacagag cgatgtttaa caacatacgc       240
     tacacgaaat ataacaccac tgttcaacaa cgcgtgtggc aaattgttga ccggtgatga       300
     catactttta gaagcgttat gtacgtttac acaactctta gttacttttc ctattgggct       360
     acgcccattc caaataatag tctgtttatc gaataagaaa tcaatccagg ctccacccat       420
     aagaaaaatc tgtaaaccta gcacgtaaga tttaattgag aataaagtta cttcagtttt       480
     gaccgtcaaa cgagtcggta tgtttaggaa cttgtgaaat ccttgaaggg accgtata         538
//
ID   Gypsy-541_AA-I repbase;    DNA;    INV; 5524 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-541_;
KW   Gypsy-541_AA-I; Gypsy-541_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5524
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5524
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5524 BP; 1702 A; 908 C; 1180 G; 1734 T; 0 other;
     gtggcgcacg aggataaaaa aaagattaaa tatagtttgt gcaccattat tcatctcgtc        60
     acggccgcag tgatattata tcgtttttgg cgtgattttt tttttctcgg cgtaagtggt       120
     gttaccaaag aaaattaatg agtgaaaagc aacaaataaa aacatatttt gtgatttttc       180
     ctcttacaag actattgatt ttctcagtgg gattattccg tagagagact gagaagcaat       240
     tttatctttt gtttgacacc atttagaatt ttatgggttt caattttaaa tgcatattgc       300
     tatgtgctct ttttcatttt agcaccattt tgactaacac tgttagtgtt cggcgagagc       360
     cctttgacga tatcacagtt aactgtggta aaaggcggta aaatcaaagt taccgttttg       420
     gctctgtatt ggttgctgcg ttgcaggaga aaagtgtttt gacagttata atctcgagaa       480
     gaggaagaaa acaacaaaaa gtgctctgtt cattagattc gaccaaaatc gcggttcagt       540
     agtggattgt agttgtgaga ctgggtaaag tcataacgct gtggttcacg tttattgacc       600
     aatttagtaa ttgttttggt tcactgaccg cgtttcagtt cgttgaccgg agaaactaat       660
     aaggagagtt tgtgttgttg ctgctgctga agagataaac cgttgttgct gctgctgcta       720
     aaattattgc tgtggttcat cgacctctga tgaaatagaa aaagaaacaa tttgtttgct       780
     ggatttgttg tggttcatcg acctcttgtg gaacagaaaa cgggaacaat tcgattgcta       840
     ttgctgctgg atttgttgtt gcggttgccg atcgtccgga ttttcggatt ttttttgctg       900
     ttgttgctgt ttgcagttta gtgccctttg gacttttctg gatccctgct cgaattaagc       960
     acgagttttt cgccccagcg aatagacagg tacgttgtat gtttgcttct accttatttt      1020
     tttttatttt tttgagttaa atattttatt tcaaggattg ccatattgac ttttactgta      1080
     tttttgtttt gtttccattt tgtgaatttc ttttatattg atacaaaagt atggcgatgt      1140
     ctattaccac cgaacctttt attccgggaa caatcccttt ttcccaatat ctcgaacaat      1200
     tggaatggca atttaaacac aataactaca atgaggatcg ttataaaaca tcttttctgg      1260
     ctatttgtgg aaccgaagtg ttcacacagc ttaagctttt gtttcctgga aacgatttta      1320
     aggacctgtc ttacaaacaa ttgactgatg cgctcaaaag gagattcgat aaaaaggact      1380
     ctgacgtaat ccatacctat aaattttgga cgcgcaggca agctcaaaat gaaaaatcag      1440
     aagattttgt tctttctata aaacagctag ctgaacgatg tgatttcggg gcttttaaag      1500
     agcgagccgt ccgcgatgcc ttggtgattg gggtgtatga tcgccagtta caaaagaaac      1560
     tttttgatga agaaaatttg acgtcggaaa gagctgaaaa gctaatttta aatcaagagt      1620
     tgtcttccga cagaacacgc ttaatagata gagatgacga gcgtagaagt agcgtcatag      1680
     ccagattggg ccgtaggatg gtgcgttcac cgaatagaag acattttaga agcaggagta      1740
     gaaacaatga cttcaacaat tcgttttctt ccagaagcag gagtcgagac cgaagttcaa      1800
     ctaaaacttt tatttgctct tattgtaata aaaaagggca tacaaaaaaa ttttgctatc      1860
     gtcttaagag gaggagtcct cgtaagaacc gttcagatgt aaaatttatt gaaacaacaa      1920
     aacctgcagt tactacacat acatctggcc ttttcaaaag gttaaagaag gagatgagtg      1980
     tagatgattc agaagatgaa gaatctccgt gcatgatgat ttcgagtaaa caaaaagtaa      2040
     acgaaccttg ttatgttgaa atcgtagtga accgacgtag aatttcaatg gaagtcgatt      2100
     gcggttccgc tgaaagtgta gtatcagaag agttctatca gcaacatttc aagaattgtc      2160
     ctattgaaat atgtaggaag aggttgtttg ttattgatgg aaataagctt catgtattag      2220
     gcaaaatcag agtactagcg cagatgaatg gcatggaaaa ggagctaatt ttggtggtgc      2280
     ttaggtgcga gaaggatttc attccgctat tgggacgtac atggatggat gttttttata      2340
     ttggttggag gaacatgttt tctcattcat cggaacccag acaacgagtg aacgccctga      2400
     cggaggaagc cacggtggag gagattaagc gtaagtttcc tgtttgtttt gacaaagatt      2460
     tatctaagcc gatagtaggt tttgagggaa accttgttct taaggatgat acgcctgtgt      2520
     tcaggaaagc gtatgatgtg cctttaagat tgcgaccaaa agtaattgaa catttagatt      2580
     cattggaaaa ggagggtatt atcacaccgg tgggggctag tgaatgggct tcaccggttg      2640
     tagttgtttt aaagaaagac caaagcataa ggctagttat agattgcaag gtttctataa      2700
     ataagctaat aattcctaat acatatcctc taccagtacc acaagacttg ttcgccacgt      2760
     tatccggctc gaaagtgttt tgtactttag atttagctgg agcttactct cagcttttgt      2820
     tatcaaagaa gtccagaaaa tttatggtga ttaacactat caaaggtctt tacgtttata      2880
     acagactgcc acaaggtgca tcatccagcg ctgctatctt tcaaagggtc atggatcaaa      2940
     ttttacaagg attagagaac gtttcttgtt atctggacga cgtccttatt tccgggaaag      3000
     attttgaaga ctgtaaaaag aaactttatt tagtcttaga tagattgtct agagctaata      3060
     ttaaagtaaa cattaagaaa tgcaagtttt ttgtaaataa tttaccatat ttaggtcatg      3120
     ttttgactga agatggtctc ctgccttgct tggaaaaaaa ttcagactat tagtgaagca      3180
     aaagctccac gtaatgtgtc cgaattgaaa gcatttttag ggcttgtcac ttattattcc      3240
     aagtttattc cgaatttttc ttcccgagta agagtattat acgaactatt gaaaaaggat      3300
     gtaaaatacg aatggagtcc agattgcgaa aaagttttta gtcaatgtaa actattcctt      3360
     ttaaaacctc aagttttgga atatttcgac cctgataaac cggtagttgt agtgtctgat      3420
     gcctgtaact atggattagg tggtgttatt gctcatgtgg taaatggtga ggaaaagcct      3480
     atttgcttca cttccttttc tcttaatgag gctcaaaaaa aatatccaat cttgcactta      3540
     gaggcgttag cagtggtcag tacggttata aagttccata aatttttgta tggaaaaaaa      3600
     tttaccattt tcactgacca taagccattg attggaattt ttggcaaaga cggcaggaat      3660
     gcaatgtccg tcacaaggct tcagcgttat gtatttgaac tttctattta tgaatacgaa      3720
     attatataca ggccatcatg tcgcatgggc aacgcagact tttgttcacg ttttcctctt      3780
     cctcaagaag ttccaaagga tttagacaga gcatacgtga aaagtttgta cttcactgat      3840
     gaatttccag tcgactacaa aaaagttgca caagagacta aacatgatga ctttttgtgt      3900
     agaattatgg attttgtaaa gaatgtttgg ccggaacgtt tggagaaaag atttgttgac      3960
     gtttactcac actatcagga cctggaagaa gtggagggct gtattctttt ccaggacagg      4020
     gtgataatac cggaatcatt aaaaaggagc gtattgaagt tacttcatcg taatcacaca      4080
     ggaatgcata aaattaagca actggctagg agaaccgttt actggttcgg aatgaatgga      4140
     gacattgagg attttgtaag atcttgcaaa atttgtcatg agacaacttc aatctctaaa      4200
     aagccgccat actctgcgtg gatgcctacc tgtaaacctt ttagtagaat acatgctgat      4260
     tttttttatt ttaaaagaaa ggtttacctt gtaatagtgg acagctatac aaagtggata      4320
     gaggtagaac tgatgaaatc tggcacggat cataagaagg tgattaaagt tttccttggc      4380
     atttttgcaa gatacggatt accagacgtc atggtaactg atggtggtcc gccttttaat      4440
     tcagattatt tcatcaaatt ttttgagcaa caaggagtga tagtaatgaa gagtcctcca      4500
     tatcatccgc caagcaacgg tcaggcagaa agaatggttc gtttggtgaa agatgtcctt      4560
     aagaaattcc ttttggatcc ggagatcaaa aaaatggacg acgacgaaca gattttttac      4620
     tttcttatga attacaggaa catatgtctt ggaaaggatg gaagttttcc ctcagagcgt      4680
     ttgctatcgt atagacctaa gacaacactc gacttgatta accctaagta caactttaaa      4740
     cgaaacttgg tttcaatgca tgatgataaa ccggacgcat tgcacacaaa tacagactat      4800
     acaattaata tgttcactaa cttaagaaaa ggcgatctga tctattacaa aaacacaaac      4860
     aaaacagata ttcgtcaatg gctaccagca gaattcctga tgcatatttc tccaaatatt      4920
     ttacagatat cgcttggtgg acgagttctt tcggcgcata gacgccaagt caaagttcct      4980
     ccggattcgc gagtcaaagc tcgtggccgt ttggtttttc atgacaatgg gccagaaatt      5040
     tcattgcacg cttttaacaa caacaacaac agcaaccgtt ctagcatttc aaccaaccat      5100
     aatgaagagg aaaaagaagc agatatggat tatctcggct acgcagccga ttctattatg      5160
     ttcgaagaag aattggctcc gcaagagaac tttggagaat atcaacgctg cgccaaacgg      5220
     aaaagagaag gggaaaatga agatttggat tcggactccg atttctatgg atttgcagct      5280
     gattctttga ttttcgatca aggtcctgct tttgaagaag tctttcagaa ggacttttcc      5340
     aatacagaac atactgcgag gcgatcaaaa agaaaacaga agaagcgaag aaaaactgat      5400
     ttcttatatt attgaattag gattttttta taatgtgtaa cataagttaa gaatttcaat      5460
     ttgcattcag attattttta agtttgactt tagtagcctt cagcttttta aaggatgaag      5520
     atgt                                                                   5524
//
ID   Gypsy-541_AA-LTR repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-541_;
KW   Gypsy-541_AA-I; Gypsy-541_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-203
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-203
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3165-3165 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 203 BP; 71 A; 33 C; 41 G; 58 T; 0 other;
     tgtagtggca agttgagaac cactatgggc tatcggtaaa atgagaattc atctcatcag        60
     agatttgagc tatcgagctc aagcatataa aacgtgcacg aaagaagagg aataaaccag       120
     tttgaatttg tgatcaaccg agttaagttc ttttactttt cctaatttaa agaagtaccc       180
     atacagttgt taagaacagt tca                                               203
//
ID   Gypsy-542_AA-I repbase;    DNA;    INV; 4666 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-542_;
KW   Gypsy-542_AA-I; Gypsy-542_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4666
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4666
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4666 BP; 1807 A; 818 C; 840 G; 1201 T; 0 other;
     tggcgatcct gccatttctc ctgggtgact aaaaaaagat aacaaatagt taataaccag        60
     tgaaaaacat ggttctgtgg acaacactat tagtgaatat aaaggaaaaa aagtataaca       120
     gagcgtaaca agtgtaatcc caaaggaaag gacaagaatt aattgtgatc ggaatgggtt       180
     ggttcagtgc cgacgagatt gtcgcaccgg ccaccaccaa catagaaaac agtaataata       240
     acgcgcaaac gatttcgtta tgtgtgctgg cagcagtagc caccggctac gtgctgttaa       300
     aagcgctgct aaaagcccac cgtaaccata cagtgcgagt ggcagagcgg gcagctcggg       360
     ttgctgctgc tcaggtgtaa agtgaagaac aattaaaccc caagcgggaa taaactggaa       420
     cgaacaatca aagtgagtga taattgaaca atcggataga ataccggcat acagtgtgat       480
     gttaacccgg atcataaacg aaaagtggag gatcaaggag aattacggac cttcgcaaca       540
     aggagcggtc ccaacggacg aagatcttga aaaatacaac tgtgaccagc caacggacga       600
     agatctttaa aattacaact gtgaccagcc atacccattg gatttcatca ttcctgccat       660
     aatgacaact atagatccat gaaaaggaga gtaccgtaac gttaagcaag ttatgaacag       720
     aatacaaaac atattttttt tttcctttta gatattgaaa agaaaaagag gtatgagaca       780
     gggagagaat catcccaaac ctaaatctaa aaaaaaaata ggtaaccatt acgtaaccag       840
     tggtaaacgt gagtaaccaa acttttagtc ttacattttg cttaatggaa aataccataa       900
     ttcaaataga agaatttata ggatatttag tggtaaacct gataaattta aaaaagaacc       960
     caaacaggaa ctatcagcac aggactctcg ttaaaaaaca agagtactgt accgatattt      1020
     tcaaaaaagc gagtgcggaa atattaaaat atgaaagtaa aatcgaaccc aaacacgtaa      1080
     aatattataa aacaaagtta aatgatacat ttgaagcatt gagtggctta ataaaacaaa      1140
     aattagatga aatggctacc ttagatttaa atgtggccat caaactagtc gataaattcg      1200
     acggtgatca atcaaaaata tcgagtttca ttgactcgat tgattattta cacgcgacct      1260
     ttccaaccgt gacagagcag aatatcataa atttcatcaa aattcggttg gtaggcccag      1320
     cacatgggtc catcaacgcc gcaaacactt tagtagcggc taaggattta atcaagcaaa      1380
     agtttggcgt caggattact ccacaggcca tccaaaacga aatgattaac acaaaacaaa      1440
     agaaagagac cataactgag tacggagaaa ccatcaacgc actagccact aagctcgctg      1500
     ccgcctatgt gtcgcagggt acatttgcgg atgagtcagc agcatcggct atagtgcaac      1560
     caatagccgt acaagcattt actgcaggga tcaaagatcc tcaaacggga ttttttgtaa      1620
     aagccagaaa tcccacgatg ttaaacagag cgatatccga cgcgttagaa gttgcaccta      1680
     ttcaaacccc ggaacagaac gtattatttg catcgttccg tggtaggtac aatggataca      1740
     gaggtcgtcc gaattggaga ggcagaggcc gtggtttctt taaccaaaac caaaattatg      1800
     accaaaatca taattttaac aggcattatg gaaacagagg aggttatgcc aataggggtg      1860
     gttatcacaa ccacagtagt aataacgcta acaatttcaa caatcactct aacccaaatc      1920
     ggcaaaattc tcaattccgt ggaaacaatg taaacaatag gaatacgaga ggagcaagag      1980
     ggcatgctaa tttagcatca gctcaagcag ctccagaaaa tcatgaaact cgaactgaag      2040
     aacaggaagc caatctaatc gatttatttc gttaatatta gcgaaaatat aatcaacata      2100
     tctcctagaa tatcattaaa attattcggg aaaaaactaa attttattgt ggatagtggc      2160
     gcaacttgtt gtttaattga taaaaattac ttaccagact gaatttatat taatggaaat      2220
     gagaaaatca atattcgtgg tgtaaacggt acaaccaaat ccttaggata tattttcact      2280
     agcttacaat attcttgtta taaattcttt attaaactac atgtagttca aaatttacca      2340
     tctaatgtag tagggttgat cggaacagat ctccttacga aatataaagc caaaattgat      2400
     tttgaaacac tatatttaac cctgaaacag aaggatgaag ctatacatat acctttactt      2460
     tctggaaata taaattcaac tttaacgtta ccagcaagaa ccgaattggt gacatttatt      2520
     aaaactaact ttagagagcc ttgtgtaata ctgaatcaag aattagcatt caacgtattt      2580
     attgctaatt ctgctgcaac cccaagtaat ggagaaatac caataaaaat aattaatgta      2640
     cggaaccatc cggtacatat aaaagctttt acgccagtcg taagagcttt gaaacattac      2700
     gatgtattgg aatatgacac tgataaaaac aacccaaaaa gagtcaaaca attgttatct      2760
     gaattgaagc ttaatcattt atcagagaat gagagaaaaa caatcgcaaa aatttgtgtc      2820
     aaatattccg atatattctg tctaaaagat gataatctaa caaccacaac aatctataaa      2880
     ccgtccatta ctgtgaagcc gaacaccagt ccaagctatt caaaacctta caaaatccca      2940
     cattatcaaa aagatgaaat taatgcgcaa ataagtaaaa tgttaaaaaa caatataatc      3000
     caaaatgctc aatctgaatg gaacagccca atattgctgg ttcctaaaaa atccgcgaat      3060
     gattgcaaaa aatggcgttt agtagtggac tacaggaaag tcaacgaaaa acttcaagat      3120
     gataagtttc ctttaccgaa catcgaagaa gttattaatt cgctatcagg agcaaagtat      3180
     ttttcgcatt tggatttgtc acagggttat tatcaatgcg agataaaacc cgaagataga      3240
     gctataacag catttacaac accaacaggt caataccaga tgaccaggtt gccaatggga      3300
     cttaaaatca gtccatcaag tttttcgaga atgatgacca tagccatgtc aggattgaat      3360
     atggaaaagt gtttagttta cttggatgat ttaatcattt ttgggagtac aatacaagaa      3420
     cataacagaa accttattga catatttgat agactcagaa aagtcaattt aaaattaaat      3480
     cccgagaaat gtaatttttt caagcaagag ttactatacc ttggtcattt tatttcttcg      3540
     gaaggaatca gacctgatcc tgaaaaaact gaatgtatca aaacatggcc aataccaaaa      3600
     aatgccaatg aggtcaagcg ttttattgca ttcgcaaatt attatcggaa acatgttgaa      3660
     aatttcgcaa aaatttgcat acccctcaac aaacttactc gaaaagacac taaatttata      3720
     tggaacaaag agtgccaaaa agctttcgac actctaaaag aaaaatttgc aaacccaccg      3780
     attttagatt atccagactt cagggaagat aatcatttta cattacatac agacgcttct      3840
     ggatacgcaa ttggagccgt tttatcaaac aaaaacggaa aacctattgc ctatgccagt      3900
     aaagctctta acaaggcaga gaaaaactac gcaacaattg agaaagagtt attggcggta      3960
     gtctgggcaa ttaagcattt cagaccatat ttatatggga agaaattcac aatttgcaca      4020
     gatcatcgac cgctagtcta tctcttctcg atgaaagaac cctcaagtcg gttaactaaa      4080
     tttagactgg caattgagga atacgaattt gacattacct acatacaagg aagtcgaaac      4140
     gtggtagcgg acgcgttgtc acgtatttca tcttctgagt taaaggaaat taataacaaa      4200
     atcaatcaag atgtgctaat gacaaccaga gcacaaacga gaaagaacaa agctaagact      4260
     gcatcctcag cggaagagaa gaatggccaa cctccttcca ctgaagggat tgcggaaatt      4320
     atatttgaca ataaaattca aactgatata caaatatctg cgtgtaataa gaaatgtaat      4380
     ttttgacaaa gaaccgaata tagaaataga tatcaatgga aaaacagagt tagtgcataa      4440
     gaatcggata aagaagttta tacaatagag acgtgtggtg gataatgatt gtaatattta      4500
     gtgataaata atgataataa taataataat aataataata ataataataa taataataat      4560
     aataataaag aaagtattat aaagtttgta aactatacaa tttattataa ctattatatt      4620
     taaaattttt aactgaagca aaaattttaa aattatatat agggcg                     4666
//
ID   Gypsy-542_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-542_;
KW   Gypsy-542_AA-I; Gypsy-542_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3166-3166 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 226 BP; 73 A; 47 C; 49 G; 57 T; 0 other;
     tgtggtggat acggacctta ttcaatgcac ggtcagcata accgcaatca agtccaaagt        60
     taaacaaact cggaccattg ctgtttatgc tgactgcagc gaaaagtgtc acgtaggcac       120
     accaaccgcg agtagcgtta agcatagaga aaaataaaat ttcattcttg tgtcgacaat       180
     caactgagtt gggtcaattt attacagtga cagtccagat gttaca                      226
//
ID   Gypsy-543_AA-I repbase;    DNA;    INV; 6554 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-543_;
KW   Gypsy-543_AA-I; Gypsy-543_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6554
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6554
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6554 BP; 1867 A; 1510 C; 1461 G; 1716 T; 0 other;
     ctggcgccca acgtgaatat ccttgtagag gatctcagga ggggaaatat atccttggat        60
     atattttcct tgtgtgcgtt gggggagttt tcgagtaatt tctaattcct ctaaaatata       120
     tccactctgg tcgcattgtt cattagaaat cagtggcaaa ttgtcgtgga ttttcgcggt       180
     ggttgagttg agccacgtgg caaaaccgat taatctcttt tctgtaacac gagtgatcta       240
     actcctaaat cgtttccaat cgtccaaaat catcatcggt aatacaaaat agtttcgagt       300
     gagataggat tttgaagagc tactgtactt cgttattttg ggaattacaa accttacgtt       360
     ccacgctgat atcgactcac cattcaacat gcctcgattg tccgtttcgg gcccagattt       420
     tgggatgctt taccgcagca tgcgtgtgga ccatctggat cccggagagc tcgattacga       480
     gctgtttttg cgaaatgtag taatagggga cgatgagtct cgggcaaaac gccgacgtag       540
     gttgcgccag atcctcaagg acgagagtga tgggcatgag ttcatcgttc attacgatct       600
     agatccagaa atggatctcg atagttgcaa gacaattttt tcagtactct cacgaattct       660
     ttcttcggag ccacgagcac aagtagagtt ttgccgatca cgcttattgc atctgggtca       720
     ccgtcttgcg gttattaaga accatgcggt gggagaattg aaaactaaag ccgaagaaga       780
     gtttgcaaaa gtactgaatt tgttttcgga gtatttttgg tcagaacaag aattctacgc       840
     aattggtgga gaatcggggt cggaagtaga gaggctgtta gatgaagcaa tagggggagt       900
     tgaggtgccg acatcgatat caaactcagc cacaggtacc gttcctaaac taccagactt       960
     gtctcagtac gttccaaagg cagactcgca aagcgctcgc ttcacaggta agtggactga      1020
     aggaggaaat tcgtaggcaa cgtcctcctc ctccagtccc cccgaggccg tcctcggtgc      1080
     acctaaattc tacaaatcca tttcgaaatg atgacgttcg taccattcaa tcggctacta      1140
     cttcatcggg aggcttcaga ttagcagact accgatcaaa tcgcgggact acggtcccaa      1200
     cttcgactat tagtggcagt gtcccatatc caccacccgt gtcccaccac ggaaatccaa      1260
     atgaatcatt tcggcatcgg atggatgaac tttcgttcag tccagttgga gtcactaatt      1320
     acaaccaatc tccaaatctt cagagtaata ttcctctacg ccaatcatct gcttcagcgg      1380
     ggaccgctcc accactagtt gcaccattgc gtaaaatgac tcccacttcc catggaaagt      1440
     gagaaaatat tccggaagtg atcatggcct gggtctcaac gagttcttat cccatgtgga      1500
     acagctggcg atttcagaac atgccaccga aatcgaccta tttgattcag cggtacacct      1560
     gttcgaaggc ccagcgttaa actggtacac ctcgtgcaga aatcaacgga tgctgcagtc      1620
     gtggcctcaa ttggtacagg agctgaaaaa cgagttcaga caccctgatc tcgattcagt      1680
     tttaggcaca aagatttacc agaaacgtca gcaaaaggga gagtcttttc agcagtatta      1740
     tctgcaaatg aataggcttt tccaagcaat gagtcattct atgacggatg ccgaaaaggt      1800
     tgaggtgctc aaaaccaatc tgcgttatga tggccgcaag gcactggtgg ggaagaatat      1860
     cgtcacgctt cgagacctac tgaccatagg taaggacttg gatgcgacgg atttttccgc      1920
     gtttaccaaa gtttttgcca cttctaaaag agagaattgt gcaattgact tcagtagtag      1980
     gaataaccca ggtagtaaga cttttgtcaa tcaaaatcgt caaaacgcga actcacaaaa      2040
     tcataaaaat cacaaaccgc agcaaaaccc cgcgaaaact gagctcaaac cacatccctc      2100
     caataagcag aacccattgg agaaagctaa gaaatccgag ggttcatctt aggattcaaa      2160
     acctgggcca agtaaaccaa gtgctctcct aaaactggtg tctaactatt ctccaccgga      2220
     ggaagggcaa tgtttcaatt gcagggatta ccacaatctc tcgaaatgcc caattccgag      2280
     aagagtgttc tgcaatagat gtgccttgat tgggttcacc accaacaact gcccatactg      2340
     tttaaaaaac gggctgggga agccctaaag ccgcagggac ccccagttgc gcgatcgtta      2400
     gatacctcag aatcttggct gccagatctc tatcatttct atgaacagag attggacaac      2460
     gaagacgaag agggcgcgct acctcaaatt cataaaataa cgcttaacag tatggcagat      2520
     gatcgaccgc atgcaaaact ccggattttc gacatttatg tcaacgctct gcttgattgc      2580
     ggtagcaatc tatcatttat caacgccacg attttcaaaa aactgaaaaa cgttcgctta      2640
     aaggaaccaa cacatccagt agagcttgga acagcagatg gttcgccttt agaaatcctt      2700
     ggcgaagtcc ttattcctta tactttcaat ggcaagacaa gagtgttgcc tacattagta      2760
     gcacctcgtc tgaccaaaga ttgtatttgt ggaatggact tctggagaat tttccagatt      2820
     tatccagccg tttcaatgat cacgcagaac agatcaaccg agatttccga tcaggagacc      2880
     actctgttca atttgtcagg ggcgcaggaa cagcgcttgg aagaagtgaa acagttattc      2940
     aaaacggctg ctcctgaaaa gcttgacgct actccacttt gcgaacacaa tattgttctg      3000
     aaagaagagt gcaaagataa caaaccaata cgcctatatc catatcccat agctccaaaa      3060
     atacaagctg gcctattttc tgagatcgat cggctgcttg caactggggt gatcgaagaa      3120
     tccaactccg attggtcgct aaatattgta ccgatacgaa aagcctccgg ggcgatccgc      3180
     ctgtgtctcg atgcccgcaa actcaatgag aggaccatac gtgacgccta tccccttccg      3240
     caccctggac gcatacttgg ccgactacct cgcgcaaact acctctcaac aattgacctc      3300
     acagaggcct ttttacagat tccgttggct aaagggtcac gaaaatattg tgctttcagt      3360
     gtcaaaggga aggggatgtt tcagtttacc cgccttccat tcggtttaat caatagccca      3420
     gccactctgg ctcggttgat gaaccgagtg ttgggtcatg gtacactgga accgaatgtc      3480
     ttcgtttacc tagacgatat agtcatagtg acggagacat tcgaggaaca tgtacggctt      3540
     ctcatggaag ttgcgaggcg attgagagag gcgaacctct cgatcaaact tgagaaatct      3600
     catttttgcc tgaatgaaat accctttcta ggttacatcc tttcttctca ggggttgaga      3660
     atcaaccctg agaaagtaaa accgatagtt gaatacgagc gtccaacgac gataactaaa      3720
     cttcgccgct tccttggtat gtctaattat tgtcggaggt tcatacccga gtacagtaag      3780
     acaaccgcag ccctcacaga gcttctgaag ttatcttcga agtcagttag atggactccg      3840
     gaagcggaag aagcctttca ggcaattaag gagaagctta taacgtcccc cgtactctcg      3900
     agtcctaatt ttgatgagga atttatcata cataccgacg cgagtgatca gaccatcgcc      3960
     ggagtattga cacaaaaaat tgaaggtcag gagcgggtaa tagaatactt ttcgaaaaag      4020
     ttaacaactc aagagcgcgc ctatcacgca accgaaaagg aggcactggc ggccctatta      4080
     tcggtggagc actttcgagg ctacattgat ggtagtcatt tcgtactggt cacggactca      4140
     tccgcgctta ctttcatcat gcgtcctaag tggaagactt cgtcacgact cagtcgttgg      4200
     agtctttcac ttcaagtgta cgacatgacg attgtgcatc gtcgggggaa aaacaatatc      4260
     gtgccggatg cactttcacg aagtgtgatg gcgatatcag ctaagacacc ctcttcgtgg      4320
     tatagtgacc taaaactgtc agttttaaat cgacccgatg attaccctga cctccgaatg      4380
     gatggagacc atttaagaaa tacgtgttca ataatgagct ttcggatcac cggtatgact      4440
     ggaagattat cccaagccca gaatcacgtg cggcgatact taaagcatgt cacgacgatt      4500
     ccatgcacgt cggggtagaa aaaactcttt ctaaggtacg tcagcattat tactggccaa      4560
     aaatggtaag ccaaatacga acgtatattc aaaaatgtgc tgtttgcaag atgatcaaac      4620
     cccctaatgc gtctacgaca cccccaatgg gtgatatgcg tattccgtcg cgtccgtggg      4680
     aaataatcgc tatcgattat atcggtccgt taccgcgttc aaaatcaggc aaccagtacg      4740
     tcctagttgc attggacctc ttctcaaagt gggtccaatt acaccctttc cctgaaattc      4800
     gcgcaaaaac gctttgtagt gaactaaccc gccattggtt tcatcgtaac tcggtgcccg      4860
     cgataattct gtctgacaac gcaacaactt tcacttcgaa agacttcaaa tcgttgctag      4920
     atcgcttcaa gataaagcac tggctttcat cccgccatca ctctcaggcc aaccctgtag      4980
     agcgggtgaa ccgggcgatt aacacgtcta tcaggtctta cgcgagagat aaccaacgcg      5040
     aatgggatac gcgactgtct gaagtcgagg ttgtaataaa ctcgacaata cactcctcca      5100
     cagggttcac cccatttcga gttgcgaggg gggaagaagt ggttctcaat ggaaccgaac      5160
     acaaagacta cgagaacgaa gaagagtcgt cggtagaggc gcgtctctca agaatccgct      5220
     tagaaacccc gaaaatgttc acattagtgc gcaaaaatct cgaaaaagct tactcagaag      5280
     cttcgaatac gtataattta cgagttcgta aacccgccaa atcattttcg gtaggagaca      5340
     ctgtttataa gaaaaataca aaaatttcca acgcacaagc atattacaac gccaaattag      5400
     gagcacagtt cctaccttgc aaagttgtag ccaaatatgg ctcatcgtct tatgagcttg      5460
     ccgatcaaga agggaaaaac atcggagttt ggcctgcatg cttgttgaaa ccggcttagc      5520
     cacttttcaa ttaaatgttg gtgatgcaag tcgagcgtcc ctagtctctg gatcaccgat      5580
     ctgaaaagac gcaggatgat tcgaatttaa ccttcaattc accttctgac atgtggacaa      5640
     agattctaag ctcacctttg gcatataaat tggcgtgtga gttcgttcta ctttccgcgg      5700
     ggtagttacg gaacctgcta attgcatagg catcactgag tttgagtcac gtcaatcctt      5760
     ttcaattaca gagacgtctg taatggcact taattacgaa gtcgcgcgcg cctctcgatg      5820
     ctcatcactc gagacttagc ggtatactga ggacttgatt tctaaaccag atacgaccca      5880
     aaaggtcaat aacttcaatc acatttcgtg aaactgcacg aaaacccgat gcaaataaat      5940
     tttgtcagtg ttagtaaatg tatttcgtat acaaatatag tccaaacaat ccacagacga      6000
     tagacggatg aacacgaaag tgtctctggc taccttacgg attagtgttg gcaaccgcaa      6060
     accgaagttt caggcaggtc accagatgca gcggtgaaat ctgcaaaatt agtttagtcg      6120
     gcaccttcac gcgtacaaca tgtgcttctc ggcgtgccgt agtacatatt ctctggtccg      6180
     gcagcgtagt gcgtgttgcg tggaacgtaa agggtcgcgt attgttctat ttgtttgggc      6240
     tccgccggac gagctccaat ctattaggtg ttattgttat gattggctga tggttggagg      6300
     ctttgaatcc tatagtaatt cgatactcgt gatacggaaa gtcgaataat gtatgttttg      6360
     ttcgtttaga tcataagtac ctactttact attgtttttg cccattgatt tctagtggat      6420
     agtgttttgg ttttgtcttt gttttttgaa cgaatattct atacaatatc ctaaaaaaaa      6480
     agatactttt gttatttacc agatcataat atgtttatgt aatctctttt cctcgcttga      6540
     ccagaggggg gata                                                        6554
//
ID   Gypsy-543_AA-LTR repbase;    DNA;    INV; 1089 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-543_;
KW   Gypsy-543_AA-I; Gypsy-543_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1089
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1089
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3167-3167 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1089 BP; 268 A; 305 C; 283 G; 233 T; 0 other;
     tgttaccgtc gagtaacatc ttttgctact ttgctacata aaatgaacgt gaaaacgtag        60
     ggaaaatgct tgtgaagttt ggctttaaaa aaaacggcta atttgaatca gcggtgggtg       120
     gcattcgttt gcgtttcggg agttgggcaa cctcagtaaa atgtgccacc gagcaggtag       180
     cgcgatcggg aggaaggagc aaacgcgcgt ctgccgtggg tggctgagcg cccggtgatg       240
     agagaagacg atcgaactgg agcacgaagg gcagttgatt tttggcagag acagtgagcg       300
     gttgtacgga acatcaaaga aagtattctt tacgacagcg tggtaatccg tccatctcgg       360
     gaagttaaag cccaaccact aaaagggctc gaggaacttc gtcaagtgac caagggccga       420
     gtgaccgtga tctctgtgtt acgaccaagt gctgcagtgc gctgcgctgc gttcaagcgg       480
     ggccagacca agaattcctc gttactgtat ctccggtgca caccggcgcc cagcggccta       540
     gtccagtggc ctaatccagc ggccttcacg gcgacgattc cctctaaaac ctgtcatcgt       600
     gataatagtc gacaagttgg cccagcaacc aacacgaagc gcacgtgtaa caccgccctc       660
     tccgtgggcc cgcccgcacg acaaacaccc tcgtccttct tgccggattg cttgtaggac       720
     agcaaagtga ggaccacaat ctcaagaccc gtcggatcaa cgtgacccac caacaccaga       780
     agatcgccat cattgcccac gtgcacgtct cgcctgctcc tcgttgccca ccctcgcagt       840
     ctgttccaca cgattcacca cccacctgta aggtaccgcc aatacactta tacatccgta       900
     atttttctga gttatagggt tttcacgttc cgaaagctcc ccacgccaaa cgccctgaga       960
     cccggaacca aaggaggtct tgcacaccca cccagcagac ggccgtggct tagaccagct      1020
     gtcttgggtt tgagccggtt cccttctgga accgagaggt tccggggccg ataaatttag      1080
     agtcttata                                                              1089
//
ID   Gypsy-544_AA-I repbase;    DNA;    INV; 5631 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-544_;
KW   Gypsy-544_AA-I; Gypsy-544_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5631
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5631
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5631 BP; 1864 A; 964 C; 1303 G; 1500 T; 0 other;
     ttggcgacga ggagaaaatg tgagtattca acataaaatg ttcaattcgt gcaaattaaa        60
     ataaaagcca cacatcattc tgcaaatttt actctgaaaa ccgtcgattc gaaagcgaaa       120
     attcaccatg gcaaccacgg tgaaacattt cgaagtgcat atctagaact ttcattttaa       180
     agctcgagat aaagcttcga tgtgttaccg tgttactgtg tcgtaacgca cgaaacattt       240
     ctgattggag aaagaaaact gtcaaaagcg gaaaatcaaa aacaaaacaa aaacaaaaat       300
     ctagttttag tatgattatt tggaaaaact gagtgatttt ctaagagtga acattgattt       360
     cagtagtttt aaaagatttt attatgcaga acttaatgca acggacaaat taaaagttat       420
     cggttgatca ggaaacttca cgaatgctgg ctatcatctc cagagaagca gctaattgat       480
     tagctgctat caaaggtacg taaataaata atgagaaaat tgcatacttg tggatttgct       540
     aaacgcaaga tagccggaat cgccagatac aattgaaacg agtcgatttt ttttatgcaa       600
     gataggcgga ttcgtcaaat gtggagtcgc attgcagaat ggatttgctt tacgcaaaaa       660
     aggcggattc gccagatgcg gaatcgcatt atagagtaga tttgcttcac gcaaaacagg       720
     cggattcgcc agatgcggat tcgcattata gagtagattt gcttcacgca aaacaggggg       780
     attcgccaga tgcggaatcg cattatagag tgaatttgct tcacgcaaag caggcggatt       840
     cgccagatgc ggaatcgcat tatacagtag atttgcttca cgcaaaacag gcggattcgc       900
     cagatgtgga atcgcataaa taaattaatt ttgtttaacg caaaataggc gggttcgtca       960
     gatggtattt gcatccaaat atctattttt ttacacatga atataatgga gacgggttcg      1020
     tcaaatgttg gacaacagca ttactaatta atgcaagtgt ggaataaaag tgtaagttgg      1080
     cgggttcgtc gagaataatt aaaagtatct agaaacttgt ttaagcggat tcgcttgtag      1140
     taagtacaaa cataaaaata tgtaaaggaa ttggttttac atatcaataa acgtattaga      1200
     aaaatggaaa aaaaatgtta cttttcttct gacatatcac tatatgaaga ataatctcct      1260
     aatgaaatga atcgaacgtt aattagactt tccaagaatt attaaaaaga ctcgctacgg      1320
     taaaagttga agaaaacaga atgatgtgtg agctaaacag cacgaaaaga agaaaatgtt      1380
     ggaaaatgta ttattgactg gtaattttcg aaataggacc agcagcgaac ttcgaatcag      1440
     agcattccaa accaatgtgg actcgtctca gctacctttg gcgtggtcca agtggaaacg      1500
     tgatttggag tgctattttg aatccgagaa aatttgttct cagtatgata aacgttcaaa      1560
     gcttctgtat ttgggtggtt ctgatctccg agatatatat gataatctgc cagagatcat      1620
     aaaaatttca cacgttttgc cggatccacc atactacgat gtggctatag caaagctgga      1680
     tgcccatttc gagccgtatc gtcgacgtac ttatgaacga cacctctttc gacaaataac      1740
     ccaaggttcg tcagaacgtt tttcggattt tgttctgcga ttaagatcac aggtgaattt      1800
     aattgattgt tttcccgtgt aattaaaatt aatacattta tcacgtatat aggtgaagcg      1860
     atgcgagtat gataaacctg aagaaatgat tttagatcaa attgtcgaga agtgtttttc      1920
     agcgaagctt aggcagaaaa tgcttaagaa agacatgcct ttaagcgaag ttgaaggcct      1980
     gggtacgagt ttagaggaaa gtgcacggaa gctgaaggag tttggaaata cgattccagg      2040
     tgatctgagc cgagatcagg tcaacagtgt gacaaagaaa gttacgggag ggaatagtat      2100
     gaacaaagag cgagtcaata ttaagagaat cggataccgt cgaccgtttg aagggaacag      2160
     tttcaataca tccaacagga gtgcttcagt tcctgtctgt ttctcttgtg gaaaacgggg      2220
     ccacgtgaaa ggggcagatg tttgtcctgc aaggaataag tcgtgtctga aatgcggagg      2280
     aaccggtcat tttgcgaagc agtgtatgaa gagagctaat aacgaagaac gaccggtggt      2340
     accaccgaag cgaattcgag cagtatacga cgatttggag gctgaacatg atgacaacta      2400
     tattttctac gccatgggga aaaacacgtt cttatttaaa gtgggaactg tggaaatacc      2460
     gatggttatc gattctggtg cagcagcaaa catcatcagc cagaaggttt gggaggaaat      2520
     gaaaagtcac aaggtacaag tgtgggacat gtccacagaa gtagatcgaa gattcacttg      2580
     ctatgcttcg aatcatccga tggagatgtc gggcagtttt atggcagttg tcgaaggtgg      2640
     gggaagaaaa gttgatgcta agttctatgt ggccaagaac ggacaacagt gtcttctagg      2700
     agacctcact gcgaaagcac tacaggtact gaaagtagga ttcaatattg gatgtatctc      2760
     caagacggct cgatctgaat ttgctaaatt caaaaacgtc gttgttgaga ttcctatcga      2820
     tggtcgagta caacctgtac agcaggctta ccggagggtc ccgtatgcgt tagaggacaa      2880
     aatagatgag aaactgcgaa tgttattaga tcagggaatt atcgaaaaag ttgaaggacc      2940
     gtctccgtgg gtatcaccga tcgtaccagt cctgaaggat tccggagatg tgagattgtg      3000
     tgttgatatg cggcgagcaa accaagctgt tcttcgtgaa actcatccgt tgcctttagt      3060
     ggatgaaata ttgggttctg ttagtggagc aaaatatttc tccaagatag acatcaagga      3120
     tgcgtaccat cagctggaga tatcggaaag atctcgtccg atcacaacgt tcattactaa      3180
     aactggtctc tacaggtaat ttaatttcta aaatcgagtt gaattcgaat aaaattgatt      3240
     tttaatgttt tttttctgta tattcatata attatcacca ttagatacaa aagacttatg      3300
     tttggagtta gctgcgctcc agaaattttt caaaaaacta tggaaacagt tctggtaggt      3360
     cttgagggag ttattgtgta tctggacgat gtagttgttt tcggttcaac taagaaagaa      3420
     catgatagaa gagtagaggc attgttgaag cgtatgaacg agtatgaaat tttactgaat      3480
     cagcagaaat gtatcttcgg cgttcaggaa atagagtttc tgggacatgt aatgagtgaa      3540
     aagggagtgc gacccaccga gagccgaatg gcagcggtca agaacttcag agaaccaaaa      3600
     acgatagcag agcttagaag tttcctcgga ttaataacgt atgttggccg tttcatttct      3660
     aatctagctg caaagacgga accattgcga agattgttac gagcgggatc aagtttccaa      3720
     tggaatcaaa agcagcagga agcatttgat aacataaaac aagctgttgc agatactaaa      3780
     tatttgggtt ttttcgatcg aaaagacaaa acgaaattga tagtcgatgc tagcccagaa      3840
     ggattaggag cggttttgct acaagaaaac agagaaggtc aacacagaat tatctcattt      3900
     gctagcaaat ccctcacgga tttggagcgt aaatatttcc aaactgagcg ggaggccctg      3960
     gcgatagtat ggggggtaga gaaattcaag ttgtaccttc ttgggtccaa atttgagcta      4020
     attactgatt gtaaagcatt gaaatttctg tttcaacctc gatctcgacc ttgcccccga      4080
     atcgaacgtt gggttctacg aattcagtcg tataactacg acatcaaaca tgaacctgga      4140
     gttacaaatc tggcagatgc attatcacgc ttatcgctct ctgatgaaaa ccattttgat      4200
     aaacctgcag atcaatacgt aaaccaactt ttggagtatg cagtgcccaa ggcagtcaca      4260
     ctagctaatg tcattgaggc cactaagcaa gatgatattc tacaaaaact tatgaatgcg      4320
     ctacatactg gttcgtgggc tgatgaattg aaggatttca agaatttcaa gtctgaaata      4380
     cactctacta atggtgtact gatgagggga gatcgtttga ttattccaga atcgttccga      4440
     caacaggttc tacagtgcgc ccatgacgga cacccgggta tgagtttgat gaaacggcgt      4500
     ttgcgacaga aagtttggtg gccaaagata gacgatcaag tcgaaaaatt tgtcaagagc      4560
     tgtggatctt gtaccctagt ttcagcagtg ggacctcctg aaccaatgct tcgaacaaaa      4620
     atgccagata agccatggca agaagtggct attgactttc taggcccatt gccttccgga      4680
     cattatttgc tggtgttaat cgactatttt agccgattta ctgaagcaat agtcatgaag      4740
     caaattacgg cggaattaac aattaatgca ctttttgaaa cattcagtcg gtttggaatt      4800
     cccgaaacat taaggtcgga taatgggcca caattcatta gtgaaccatt taaagatttt      4860
     tgtgaagaat acgggattaa tcatcaaaaa acaactccat attggccaca ggctaatggt      4920
     gaggtagagc ggatgaacag cactattttg aaacgattaa gaattagtca ggaagaaaaa      4980
     aataagcatt ggaaatggga tttgagaagt tttttgttga tgtataactc aacaccccat      5040
     tccataactg gagttgctcc gtcagctctc atgttcggaa gaatattgcg agacaagctg      5100
     cctagtcttc atctttcggt aaacgtgcta ccagaggaaa tcagggaccg tgattggatg      5160
     aagaaactag aagcagtggg aaaatccgac gctcaaagga acgctaagaa gaaagacctg      5220
     aacaaaggag atgtttatgt tgtaggggcg aaacgtatta ttaaagaaaa taaactagct      5280
     acaaactacg gatcagagct gtttgaaatt atctccagaa acggcacaga agttcaaatt      5340
     cgttcaaagg aatccggaaa ggtatatact cgaaatgtag ctcacctgaa acgatttgtt      5400
     gaaggagcag gaacagaatg tcaagaaagt aacgaaacaa tggaccaaac ggaagcagta      5460
     cgagaagaca cggaagcaga tggaacaccg accgatttaa aaaactcagc agcagttgaa      5520
     tcgtcatcgg ctcgacgcag tcggcgggaa ttaagaactc cacaatatct taaaaattat      5580
     attactcatg taactgataa ttattgtttt caaggataag taaaggggga a               5631
//
ID   Gypsy-544_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-544_;
KW   Gypsy-544_AA-I; Gypsy-544_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-159
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3168-3168 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 159 BP; 48 A; 21 C; 41 G; 49 T; 0 other;
     tgtagtatcg tagcaagcca tgtgattggg agatatagac ggtagagttg tagaacagac        60
     gagcagtgaa gtggttcaat acagagtgtt tctcagaaat cttgcgtgtt gtagttcagt       120
     gtaatctgtg ctaatattcc gaataatcca gatattata                              159
//
ID   Gypsy-545_AA-I repbase;    DNA;    INV; 5554 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-545_;
KW   Gypsy-545_AA-I; Gypsy-545_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5554
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5554
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3124-3124 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >99% similar to the consensus.
XX
SQ   Sequence 5554 BP; 1613 A; 1160 C; 1421 G; 1355 T; 5 other;
     ttggcgatcc taccaggctg ctgagttctc agcagaaaag aatcattcaa tttttcggat        60
     ttttgctgtc agaaaatcag ccattgagcc atattgtttt cggaaatttg agtttggtga       120
     ttttctttct acattcggag taaagacagt gctttggaaa tcaaatggac ggattagtgt       180
     acggaaawtg gtgtagtagt tcattgcata tggaaaaagt aacaaaacgg acgaccaagt       240
     gacaaaaacc ggtttagcgg atcgaacgat cgtgtgatgg aaatatggca gcggatcgga       300
     cgaccgcgtg agaaaattat ggaagcggat cggacgaccg tgcgattgaa acatggtagc       360
     ggatcgaacg actgcgtaat ggaaatgtgg tagcggatcg gacgaccgcg tggctgaatt       420
     gtgtaagcgg atcggacgac cgcgtagtga atatatggta gcggatcgga cgaccgcgcg       480
     gtggtaatgt agtgtcgtat aggatgactg cggagggatt tgatggaaaa aaaatcctaa       540
     atgattaagt gaaatagttt ctatcatcat ttttttttct cgagtagtgt gcagtgttca       600
     atatttttat tcaaattgat caaaggccta aacaaatttc cgaaagcaac tttttctagt       660
     tcaatgatca atgtgttaac taaaaaactc aaacaaacaa tttattgtgt ttgcaggtta       720
     acttgagcca taatcggaaa gttatttcaa tcagcatgtc ggaagggaaa tatgtgcgtg       780
     ccccttgtta tcaaagtgac ccggaagagc tcgacgatca aagtgatgct tcgttgggaa       840
     atgatcccga tgacgtagga gatgagggaa agctttgcga ttcggatgga tgcggcacag       900
     gcggttttgg tttttgtccc gaagaagaat taggtgaaga cggtagatcg accgctagcg       960
     tcgatgatga ggaggaacgc aatgcagtag gacttggcgg cagcaactcg gaaaacgcag      1020
     atacggatcc stcatctgtg catcccgaaa atcaggatta cggtcgccgg atgcagcaaa      1080
     tggagaatat gctgaaccaa ctggtgaaag ttatggttcc caatcaatca gtcgttgggg      1140
     ccaacgcgat tccatacgag gaggacaaca gctggaacac tagcaacgtt aacgtaggtg      1200
     catcgaccag ttcagccaat gttcgttggg aaaatatcca gccattccca gacaacgtgc      1260
     cggccaacag gatgtgggag cagtggaatc gatttatcga ccgattcgag atcgctgcat      1320
     ccctctccaa tatttgcgac ccggtaaagc gttcacaaat cctattcttg tcgatgggtg      1380
     aaaaattaca aagaatcact cgggcggcaa gacttcgacc aagtttagag gaacccagct      1440
     gctatgccgt ttttgtgagg aatattgaag gctatttacg ctcaatggtg gatgtgacag      1500
     ctgaacatga ggcgttcacc aatttgaagc aggaagcgaa tgaaccggtt atggatttcc      1560
     attcccgatt gatggagaaa gttcgcctat gtggttacag tagcgccgat caagagaggt      1620
     ttgtccgggc ccagctactg aaagggatgc gaaacaagga gttggtgaaa tcggcaagga      1680
     cgtttggata cgacacactc ttcatcgttc agtcggccac ccgtgaagaa gcgtttatgg      1740
     acgagagcgc tcaaacggaa ccttcccagg cactggcgtt aacccggaat cgcccacgga      1800
     cttctggcga ggcacgacat tggaagcaaa cgaacgaatc aacagcagac agatggacac      1860
     gtcctagaag gcgcgagacg gatgagaaaa gaaatcgagg attgggccgc cgatcgcgct      1920
     gctcgaagtg tgaccgtctt tttcacaaat ttggatcgtg tccggctgtc aacagcaact      1980
     gcaacaagtg tggcttgcgc ggccatttcg ccgtagtgtg ccggaagaaa gatgcaaacc      2040
     aactccaagt tgagcgtaac catgaagcag aatkggaaag tgaccgagac cctggaaagg      2100
     taaaccagaa aatgattcaa tactgaacta atttgatttc ttgttctctc ctttttttta      2160
     atgaactctt gaattgaatt taaatacaag tgaattctca cactctaaaa ttgttttatt      2220
     gacatcgcac ttccaggaaa taaactcaat ttcgttagca gacacactga tcgactgccg      2280
     ggtaggatct tcgtatccaa ttcgtttttt gattgattcg ggctcagatg taaatacgat      2340
     tggtggagat gactggacac atctgaaaca cgagtatcaa tcagggaatg cacatttgga      2400
     acctctcgac ctgtcgaccg gtgatctgcg atcttacgcg tccagtaagc ccatatccgt      2460
     gcaatgggca ttcaaagcgg aaatcgaggt agtagatagt cgcaaaccaa caatcgtcgc      2520
     tgtgttttat gtcgttgatc aaggttcccg ttcgttattg ggtcgctcca cagcagggga      2580
     tttaagactg ttgcaagttg gtgtagacgt caatcgatgc gagagaattg gacaagatac      2640
     gaattttccc aaagtaccag gcgtattggt gaagttcagt gtagatccaa cagtacctcc      2700
     ggctaaaaac gcatattata atgtaccggc agcgtacaga gaaagcgcta aacttaggct      2760
     ttcagaaatg gaagaccaag gtatcattga acgcgtaaca tcggcgccca actggatcag      2820
     cggcatgtca gcagtggcaa aggctaaagg tgacttccgg ttggtcgtga acatgcgggc      2880
     cgccaatcgt gcaatcaaaa gggaatatta ccgtatgcct tcactggatg agatgagaat      2940
     caagcttcac ggggcaaaat ttttctcgaa actagatttg tcgaatgcat tttaccactt      3000
     ggagctccat gaagagtcca gggaccttac gactttcttg acagagagtg gtatgttccg      3060
     attcacccgt ttaatgttcg gggtaaattg tgccccggaa atatttcaac gggagatgtc      3120
     cagaatgctt gagggcgcgg aaaacaccat agtgtatatt gacgacatcc ttatgttcgc      3180
     ggataccctg gaccaacttc atacaattgt ctctaaggtg ttgagaatcc tgcgagaaaa      3240
     caacttgacc ttgaatctcg aaaaatgtga attcgacaag tcccgtatta ggtggttagg      3300
     acacgagctc agtgaaaacg gattcaacat cgacgaggaa aaaatcaagg acattcgaag      3360
     attccggcaa ccaaacacct tatctgagct acgaagtttc ctgggactgg caacctttgt      3420
     aagcccctat atccaaggtt ttgctaacat cgcgagtccg ttgtgggagc ttaccagcag      3480
     ttctaatgcg tgggtttggg gagaagagca gtcaaaagct tttgagctct tgagagatcg      3540
     gattgtgcag tgtaccacat ccctcggcta cttctcggac caaggaaaaa caatattata      3600
     tacggatgca tccccatacg ctttaggggc cgttctcgtc caagaaagcg atgaaaaacc      3660
     accgagaata ataagttttg cctcaaaatc tctgacgatg accgaaaaaa aatatccgca      3720
     aaaccagcgc gaagctcttg ctgctgtgtg ggcggtagag cattttgcgt attttttgtt      3780
     agggcggcat ttcactctca gaaccgatgc gcaaggcttc acgttcatat tgaacagatc      3840
     acgggaggat tctaagcgag cactgaaccg ggcagacgga tgggctctac ggcttagtcc      3900
     atataatttc gaggtagagt atgttcgcgg acgagagaac atagccgatc cttcgtcacg      3960
     cctctacgaa ggggaagacg gtccattcga cgagggtgct cgttcctggg agcttgcttc      4020
     tctggaggtg aataaagttg gctttttgac cgagaaggaa attgagcacg caacaagcaa      4080
     ggatacgcag ctgacggagg taaacatgat catatatatt atctatctat ttctcccttt      4140
     tctaaatttg aatttgtcat cccataggtg ctagatgcct tagaaacgga catctggccg      4200
     aagcacctca agcagttcca agctttaagt aatgaactgt ccatgcatga agggatgctg      4260
     actaaaacgg gatgcgcagt aatacccgaa tgtcttcgtc ggaaaacgct agaggtcgct      4320
     cacgagggcc atccatccaa tgcaaaattt aaaagcattt tgcgagagcg agtttggtgg      4380
     cctggtattg cgacggatgc ggaggcatgg gtgaaatcat gcgctgtttg tgcaaccaac      4440
     gggcggcctg aaaagcccac tccaatggct cgagtctttg ccccccaagc agtgtgggag      4500
     actattggca tagatttcaa cggaccctat gctaaattcg ggggtatttc gattttggtt      4560
     ttagttgatt atcgctccag atacgtaatc gctaaacccg tgagatcaac gagctttgat      4620
     cacacccgaa aggtcttaga agaggtgttc gagaaagagg gctttccgaa aaacattaaa      4680
     tcagataatg gccccccctt taacggggaa gaatataagc aattttgtct tgagcgcggc      4740
     atacatgcaa ctttctcaac cccgttwtat ccacaacaga atggattggc agaaagctgc      4800
     atgaaattgg tgaacaaggc aatgagtgct gcctcagcta acggagctag ctatagagac      4860
     gaactgagcg cggcagttca cgcttacaac gctgctgcgc actctgtaac gggagtacct      4920
     ccagaagagg tcatgacggg gcggaaaatt aggcgtggac tacctctgat acgtcgtgga      4980
     aaggctacct ttgatgataa cctgctaaac gccaaagaca tgaaatcaaa aattgaggcg      5040
     aaacagcgag aagacgctaa acgaggagct cgtcagtgtc gtattaagcc aggggacaag      5100
     gttgtcgtgg agcgccagat ccgagccaaa gccgagtcac gttttgatcc tcggaaatac      5160
     acggtaatag aagaacgcaa cggaaccctt gttttgagcg acgaagacgg ccagttattg      5220
     aagcgacatg tgacgcagac taagaaagtc tacgattgga gagacgcagt aaaagctgtt      5280
     cctacaaacc ataccgtttc agagcaggaa gctcaatcga ctccacaagc ggaaaaccca      5340
     caatctggtg ctattgatcg cccgacccgc gtgaaaagaa taccggagta tctgaaaaat      5400
     tacgtaagtg ttgtagaaga ggacatatgc taaggcagta ttgacttgaa ttgatttttt      5460
     ttttccatta acaactgaat taaaataaat aaaaacatga aaacgattwt ttttttttca      5520
     ttcccgggtt tccatttttt cggaggaggg gtga                                  5554
//
ID   Gypsy-545_AA-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-545_;
KW   Gypsy-545_AA-I; Gypsy-545_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-272
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-272
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3169-3169 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 272 BP; 75 A; 80 C; 55 G; 62 T; 0 other;
     tgtgtgggtt tatgaatata gttctctgca tcataaacga accgacaata tcctacttca        60
     tataaacacc ttgaccgttc atgcacagcc ctatccaact ctacaatatg caatcggcca       120
     gtcactcaac cctgcatcag ctcacccgat cgcacaacac gaagcatcct cctctttcgt       180
     attcaggcag tggcagaggt aagacgtgtg tcccgctatc ccggacaagt tcggaggcaa       240
     aatggctgga gtctggcagc gaaacccgca ca                                     272
//
ID   Gypsy-546_AA-I repbase;    DNA;    INV; 5758 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-546_;
KW   Gypsy-546_AA-I; Gypsy-546_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5758
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5758
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3125-3125 (2020).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5758 BP; 1825 A; 1130 C; 1382 G; 1416 T; 5 other;
     ttggcgatcc tgccaaactt attgtttgga taattgaatc actcggtacg gaaatgtttc        60
     gcgataattc agtgtgaaaa acgtaatgag gtaacgaaaa cctccgagaa taaaaaaaaa       120
     aaaatatgcg tgtaaagcag accgcctggt gaatgacgag ttaacaaaac cgtgaaaagt       180
     gaaggtgtgt aacgaaaacc accttgggaa agttttaaga ctaaagtgaa aatagtggcg       240
     agtaaagaaa accgcatagt gaatcacagt ttataatatt ttccaaaagt acaggtgtgt       300
     aacgaaaacc accaaggaaa aaggaagaag acaatcgttt atgtgagtaa tgaaaaccac       360
     atacaaaatg gcgtgtcttg atgattactg agtaggcgtg taacgaaaac cgctactaaa       420
     ttgaaaaaag tgcagggtac gtaatgaaaa ctacccgtga acaaactact tgccagattt       480
     aaaaaaatat gtttgttgac atagtgcaaa gtgataaaaa tacattaaaa atatgctgga       540
     tgtctacatg ttgtgcgaag aaaaagttgg aattgaaata agagttattt atttccaatt       600
     gtttcagatt tctgaatttg tcaacaatat aacaaaccgt tcgttcaact atgacgtcag       660
     agggcaaata tgtgcaagtc ggtcaggccg gcggaagtat tgatgacgtc tcagatcagg       720
     aatctgattc agaggaggat ccggaagctg ggagatacgt tcgcgctccg ttggcttatc       780
     acagtgaata tgatgaacaa aacgacgaca atgaagaaga cccacatgat gaccactccg       840
     taccagtgga tccgattcgt gaaaacgaaa tgttgaggca gcagctcgcc gatatgcgga       900
     aaaagttcgc tgaaataaca tcgagaaaca aaagcagcct ggaacgggac accgacatca       960
     acgaagcgga gaaaagctgg accaatttac gtatgttgcc atcgtcacgg acggaatcga      1020
     gtggacagag cattagatgg gaccaaatga aaccgttccc taaagatgta ccagcaacca      1080
     ggatgttgga ggaatggact agatacagag aaaattttga gattgctgca tcattgtcga      1140
     acgcttttga ccccgtacga cgatctcagt tgctgtactt gtcgatgggt gaccagatgc      1200
     aaggtattgt tcgagcggcc aagcttcgtc cgaatttgaa cgacagtcag tgctacgcta      1260
     ttttcaccaa gaacatcgag gaacatctgc gatcgttaac tgacaccgcc gcggaacatg      1320
     atgcttttac gtgtatgcag caaggcaaag gagagactgt gatgagcttc cattctaggt      1380
     taatggaaaa agccattgcg tgccgatata gtacgagcaa ccgggagcaa ttcgttcacg      1440
     cgcagctttt gaagggaatg acaaacagcg agctggccag aaccgctagg acgtttggcc      1500
     ttaagaccaa tgatatcgtc aaggctgcta cacgtgaaga agcatatcta gtggaaacga      1560
     ccaaacggat gatcacggaa agcgaatcaa tcaatcacgt ccaagggcgg gtgtcgagac      1620
     ctactatcaa acgggaaagt agaggtgagt ccagtggagc ccaagccaaa catcttcgtc      1680
     tagacaaaca gcggcccaac accagcagcc gttgtacaag gtgtaacaaa tggatgcacc      1740
     ggaatcgtcc atgcccggct ctaaagctca agtgcaacaa atgcggaaaa ttcggmcact      1800
     ttgctgtagt gtgcagaacg attcgcgtga ataccgtgca agattacgat ctaccgcaac      1860
     agataaaaac tgacactaag gaggaagagg taaagcaaac ttgaattaaa tgttttttaa      1920
     tatgataamt ataatacaca tgaagtcatc tgttacawac tagttgagtt cttattttga      1980
     aaccttattt ccaacagctt aatgcccttt ctcttgatga cgtactaatc gactgccgtt      2040
     tgggatcatc cagtccaata aggttcctga tcgactcggg agcagatgta aacgtaattg      2100
     gaggtgctga ttggcaaaag ctaaaaatgg aatatgagac agaattagtt gaattgcaac      2160
     cgatcaagat aagtagtgat agaggggtac gagcttatgc atctgaagct ccgatgcaaa      2220
     tagattttgc gtttagagcg aatatagttg taaacggatc agcaaacccg gtagaagcag      2280
     actttctggt ggtgaaagaa ggcaagcggt ctttacttgg cagatctaca gcaagcgacc      2340
     tgaaattgtt gtttgtggga gcacaggtca acaagtgcga atatgcgagc gacaaagaat      2400
     ttcccaagat gccgggagta aaaatcaagt ttagtatcga caagagcgtt gcaccaactc      2460
     gaaacgctta ttataacgtg cccgcagctt accgggaagg tgctcgacaa cgactatcag      2520
     aaatggaagc tagcggcatt attgagaaag taacaacggc accggaatgg ataagcggta      2580
     tgtccgcagt atcgaaaggt aaggacgatt ttcggttggt tgtgaatatg agagcgccca      2640
     accgagctat caagagggaa tattttcgcc tgccaatttt ggatgagatg aaaatcaaat      2700
     tgcatggggc acgatatttt acgaagctag atttaaaaag tgcctactat catttggagt      2760
     tggataccga gtctcgggaa ttgacaactt ttctggcgga gtgcggtatg tttcgcttca      2820
     ctcggttaat gttcggggtc aactgcgcac ccgaagtatt tcaacgcgag atgacccgaa      2880
     tactagagag cgtcaaaaac aaagtaatct atattgacga cgtcttactg tttgctgaca      2940
     gtttggagga gttgcataaa accgttgctc aagtacttcg tattctcagg aatmacaact      3000
     tgactctgaa tactgaaaag tgcgagttcg ataaaacgga gctaacattt cttggccata      3060
     aattggataa agacggtttc catatcgagg aggccaaaat aaaagccata caaaactttc      3120
     gacgacctac aacggcttct gaactgcgca gttttcttgg gttggcatca tttgtcagcc      3180
     cttatataag aaactttgca atggtcacaa atcctctgtg gtcagttgta ggatctaaat      3240
     cgtggagctg gggtaggcaa caggaagatg ccttcaacaa actgaagcaa cagataatca      3300
     actgcaccgt atcgttgggc tatttttctg aacatgaaag caccgttctg tatacagatg      3360
     catcacctat tgccttgggt gcggtactgg tgcaagaaaa agctggagaa aattcgcgca      3420
     ttatcagttt tgcttcaaag gcgttgactg aaacggagaa gaaatatgcg cagaatcaac      3480
     gagaggctct tgcggcagtt tgggcagtcg aacactactc gtacttcttg ctaggtcgag      3540
     aattcacctt gcgtaccgat gcaagaggag ttgcctttat tttcaaccga tcaagggaaa      3600
     acaccaaaag ggctctaacc agagcagatg gttgggcatt gaggctcagt ccatataatt      3660
     acaagataga gtacgttcga ggcagtgaca atatagcaga tccatcttca cgattgtatc      3720
     aaggtaacga caaaccattc gatgaggaaa tgagcccttg ggaagtagcc catattgaag      3780
     cgaatgctgt tggctttata actgaagatg aaatcaagga atacactaaa aaggacgaaa      3840
     ccttacagca ggtatattat ggaaagtatt taactatttt cgtttatctt actttaaaat      3900
     taaaattaca ggtaattgaa gccttaagtt cgggaaaatg gccgaaaagt ttgagtaggt      3960
     tccaagcggt atccgaaaat ttactgatga aagatggagt actgacaaag ctaggttgcg      4020
     ttgttatccc tgatcagctg cggtctaaaa ctcttgaggt agcacatact ggccatccgt      4080
     caacagcaaa gctcaaaagc attctacgtg aacgagtttg gtggccaggc atggctatgg      4140
     acgctgatga atgggttaaa gcttgtgaga catgtgcttt aaacggcaga ccggaaaaac      4200
     cgacaccaat gaagcggaaa tttgcgccaa agacggtatg ggaaacgatc gctctcgact      4260
     ttaatggccc ttacgcacgt tatggtggaa tttcgatctt agtgattatt gactacagat      4320
     cgagatacgc aattgcaagg cccgtaagat cgactagttt cgaaaacacg aagaagattc      4380
     tcgacgaagt atttcacaga gaagggttcc ccgaagccat taagtcagac aacggaccac      4440
     ctttcaacgg ggaggactac aaaaattact gcaacgttag aggtattcaa acgatcttct      4500
     ccaccccgtt ctttccccag caaaatgggc tggtggagaa cttcatgaag gttgtcaata      4560
     aggcaatgtc aaccgcgcta tcaagagggt gtgattttca tgaagaactt caagcagctg      4620
     tgaacgctca taattcggca gcacacacag ttaccagaat gccacctgag gaagtaatgt      4680
     acggtagacg aatccggcgt ggactaccgt tgattaatcg aggaagagca aatattgatg      4740
     agcacctatt agatgagaga gacgctgaat ctaaaatcgg ttccaagatt cgtgcggatg      4800
     aacggcggaa tgctaaaccg tgtggtgtcc acccaggaga tgaagttata attgaacggt      4860
     tatcgaaggc gaaaggagac acaagattcg ataaaaaacg tttcacggta atagagcaag      4920
     acaacggcaa ccttctactt agcgacgaag acggtcatcg cgttcgtcgt catgttacac      4980
     agaccaagaa ggtccatgat tggcgaaaac tggacaccaa gaagctatca gaggaattgg      5040
     tcaacagtcg tccgtcgaga gtaaagaaag ctccgggtca tctgatggat tatgtgcagc      5100
     aggctgagaa cctaccatga gccactacga aaggaacacc agtgtgagtt ggatatacca      5160
     tcactacata agataaataa atttgttcgt tttactcact ggtttatttc cattccttcc      5220
     ttaattgcta tcaatggcag catgtcactt tcccagggat agttttctaa gcaccggatc      5280
     cctccgtttt gtatttggaa acctcttgag aggaatgacc taagcgaagc cttmgagtgt      5340
     ttggctttgt cgtccatgtt cggctgattt tcagttgctg tggatcctct actggatggt      5400
     ggcgtctact cgctctctaa acccgatgca gaaggaggaa tctccgccaa tgcctactgc      5460
     gacgactgcg acagtttttg attgtctttc gcgatcaaaa caatcggggc aaacagaatc      5520
     gaagttgaca caaaacatgt cgagagaaaa gtcaaaacat agcactgtcg tacaagcgtt      5580
     acgtgtcagt gacgactgta taacgatgcc ctgttgtctc gttgatatgc acggaaatat      5640
     tttttttttt tcgaagtgat tttcagctaa ataatttgct tctgatattc acggttttcc      5700
     tgttatagaa cataagtaat gcaattttac cttctttttt tttaaagcag aggaagaa        5758
//
ID   Gypsy-546_AA-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-546_;
KW   Gypsy-546_AA-I; Gypsy-546_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-289
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-289
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3170-3170 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 289 BP; 64 A; 60 C; 73 G; 92 T; 0 other;
     tgtgaggtgt catgtatacg gaccttaatg ttcatagaat cctatccctc acaatcgata        60
     gtggtggtaa cattgtgata caatgttggt accactggtc tcctctcttg gtagcactag       120
     acagcggaga tggctacatc agacagtgct tcatcatcat taagtagctg atcgttggtg       180
     aggtaaggcg tactctgtgt gctgcggcat tgccgtgccg agtgattctc tagcagtcat       240
     tttgtaatgg ccgcacttgt ggtttcctgc atttggtcag atatttaca                   289
//
ID   Gypsy-547_AA-I repbase;    DNA;    INV; 6216 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-547_;
KW   Gypsy-547_AA-I; Gypsy-547_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6216 BP; 1882 A; 1266 C; 1525 G; 1543 T; 0 other;
     attggcgcaa ccggtaggat tataaaactg taagtatatt ttttttgtgt ttggtcaaat        60
     gatgaaacta ttcagtgaaa agaaacaggt cgtgatataa ttgatggaat tgctctgata       120
     atcgtcaaat aattattttc gcatttttat aaaatggccg ctgtaccgag gcatacaatt       180
     tatttttgta agtgtttaac attttgatgg tagtgtaacc caaatgttat gtagcgtcag       240
     attgaaggtt aaattagaat tggataaaat ttgagtgcca tcagaaaaaa agcgattttt       300
     ttcttttctc aaaaaaaaat ggcgtcggtc acagcgtagc ctggagattc cacgagaccg       360
     aaagtgttag agcagagcta aagagaaaaa gaccgttgga ataatgcgga gggagatcgg       420
     caccgtagca agtgtaagaa agaaagtgag agaatctggt tccaattgga gtgagaggcc       480
     gttgagcttt caaaaggccg cagttccaca gttgaaaaaa tagagagtcc attcgaacgt       540
     cgcagccaac agagggagac cgaacgttca atgcagcttc ttttcaagtg agtccgattc       600
     ctttgggcgt cgcagcaaag agaaaattga gagtccactc gcaaacagtg tagcacacta       660
     atgaaatcga cgctggtact gttcgtagcg tgaagctttc acgagtccgc aatgccagag       720
     ttttctccat tcgaacgtcg cagccaacag agggagaccg aacgttcaat gcagctacaa       780
     gtgagtccga ttcctttggg cgtcgcagca aagagaaaaa tgagagtcca ctcgcaaaca       840
     gtgtagcaca ctaatgaaat cgacgctggt actgttcgta gcgtgaagct ttcacgagtc       900
     cgcaatgcca gagctgaaaa aaagagagtc cattcgaacg tcgcagccaa cagagaggga       960
     ccgaacgttc aatgcagcta cttttcaagt gagtccgatt cttttgggcg tcgcagcaga      1020
     gagagagaga aatgagggtc ctctcgcaaa cagcgtagtg tagcccacca atgattttga      1080
     tgctgacact gatcgtagtg tggagctttc acgagtccga taatgccaaa gagaaaggtc      1140
     gatcgtacgt cgcagcaaac cagcaacacg aagctgagcg taggcaaccg acatttcgaa      1200
     gcaaaagaga aaaaaaatga acgtgatatt gatgtcatcg acatagcagc agaaagaatg      1260
     cttatttggt tttagtgtac gtcacattta gagtgatttg gaatgtattg tatagtggag      1320
     cttgttcaaa gcaaaataag ctcccttgat tgtggttgtg tgaccaaatt attgcaacat      1380
     ttgaatgttg aatgaagagc atcacagggc tgatggaaat gtgaggccga attagtgttg      1440
     gtatcgactg aagaaataga gcagcataga gataatgcga gaaaaaaatg ttcgcctaca      1500
     ctaacactct gtttttctat tccatcgttc actgtgttcg attactgtta aatattctca      1560
     cgctcatcgc gttgggtttg gcccaataag cttccgatac tgaacaaaat aaacatgtga      1620
     ctttgccctg tgtgcttttc atgaaaatca gtaaatgaaa gacagtggga aaggttctgg      1680
     ctattggtgc aaaatgtgta ctgtaaacag gacttctatt aagtgcctat aaaacgaatt      1740
     aacagtttat gtgtaagaat aaatagaatc ctgagtccta ctgaagcatg tctcattcat      1800
     gtttttgcta gttggataaa ttgtgtcatc tcttttctct tctggttatg cagaaccatg      1860
     gacgataagg attggccatt gcaagttttc aacgatgctg tcgaatcatc ggatctcaga      1920
     agagaatggg aggaatggca tcgttcattc gagctcatcc ttgagatgaa acggattgag      1980
     tctcagcacg acaaacttgt gttgctgtta gctcgaggag gtcgtggact acagcgcata      2040
     ttttacaacc ttcgcccggt accagaggaa gtataccctg atccggttcc ggtgccactg      2100
     ataccgaagg aaattccaga gtacgataac gcagtcttac ggctgagtaa atttttcatc      2160
     ggaaagcgca atgtccgaat tgaactgaaa ttgttccgta cactcaagca agcgcaggag      2220
     gaatcattta gccagttttt gctgaggttg cgcacacagg ctgcacgctg cgaatttcaa      2280
     gaacgtgagg aaatagagat cctgcagcaa gtaaccatgg gagcgttcga cgagcgggtc      2340
     cgggataaag ggctcgaagg aacactcaac cttgacgaga ttgcgaacta tgctatgaac      2400
     agagagatgc ttcttaagca aaaggagaag gcaagagcat tgaaggagga accagccgta      2460
     gttgcggcgg tgaagcaaga gcgttactca ggaacagcat atcgaggaaa aatcagagca      2520
     cgagcgttcc agccgggtcc cagaagagca aacagtgaat gcaaccgatg cggctcgtac      2580
     cgtcatttgt ctgaagatat acggtaccca gccaagaagg cccgctgcaa tagttgcgga      2640
     aaaatcggcc attttggtag gaagtgccga ggtggcacga atagacgatt tgaccgtcgg      2700
     gagccctgga agcatccgaa ggaggaagcc aacgttattt ctccggaaga ggattggaag      2760
     gaggaacttc ctcgtcgccc ggtcccagaa gacattcaac aggtaaatta attgattaaa      2820
     atttgttgat tatgtgagga tttgtaggat cctagataaa ccgttgcagt ttataaactt      2880
     aataaagaaa tcgtctataa taaagaaacg ttaataataa actatttact aggttacttc      2940
     attatcccgc aacaatggaa tcattacgtg cttgatcaac aacttcccag tcgattttct      3000
     cattgactca ggagcggcga ttaacacaat taccgaagca gtttggacag agcttcagaa      3060
     taacaatgtc caagtcatca aacgaactgc ttgtggtgat cgcaaatttt cctcctacgc      3120
     cagtgagaaa cctcttcgcg ttcttgcaat tcttgaatcc caaatttcaa tcaatccctc      3180
     gaagccaacc tcttatgcgg agtttttcgt aatagagggt gccaaccgtt cgttgcttag      3240
     caaaacgacg gctgaagaac tgaacgtttt gaaagttggc ttagacgtca atcatgtcgt      3300
     ggaaactacg agcccttttc caaagtttcc gaatgtgcaa gtgaagcttt cagttgatcc      3360
     aacagtccca ccaaagaagc ttgcctatct ctggattcca gagcctatga aagacaaggt      3420
     tgatgcgaag atccaggaga tgctcgaaca ggatattatt gagccggtta gaggtcctcc      3480
     agattggatt tctccattgg tggtcgtccc taaagggaaa gatgacgttc gactctgcgt      3540
     gaacatgaag ctcccaaatc aggcgattca gagagagcat tacccgattc cagtaattga      3600
     tacctttctt aatgaacttc gtggggctac gtacttctcc aagctcgaca tgacctcggc      3660
     ctattatcat ttggagcttc accctgactc ccgcaatgtc actactttca tgacaaatcg      3720
     aggtctgatg cgttttaagc ggctcatgtt cgggataaac tgtgccccgg aaatatttca      3780
     gcgggtgatg tcggaaatgt tagcgggaat tgatggagtt ggtagtagca ggaagcacgc      3840
     gtgaggagca ggaagcacgc gtgaggagca cgacatacgg ctgcagaaag tattgtccgt      3900
     tttggaaagc aacaatgcga aacttaataa ggaaaaatgt gtatttgggg tgacagagct      3960
     ggaaatactg ggcttcaaag taagcgcctt gggaatttgc ccatctgagg aaaagatcga      4020
     ggcaatccgc aacttccgaa tgccagagac aaaggaggaa gttcggagct ttttagggct      4080
     cgtaaacttt gtaggtcatt ttattccaaa cctgtcaacc cgtactgagc cccttcgtca      4140
     gtttgttcgt ggagaaattg gtacttttgg agaaaaccaa aaatcaacgt ttgacgatct      4200
     tcgacaagaa ctgacagcaa aagtgagaaa attaggcttc ttcgatccta aagatacaac      4260
     ggaactctac gtggatgctt ctccggtggg tttgggggcc gtgctcatcc aacgtgattc      4320
     ggcaggatgg cctagaatca taagctttgc ctcaaaaggc ctgactaatg ctgaacgact      4380
     gtaccctcag acccagcgag aggcactagc cgtggtatgg gcagtggaaa agtattattt      4440
     gtatttattt ggactccgtt tcacaatctt cacggatcat aaaacccttg aatatatttt      4500
     tgaagggaag tatcgggatg aaaagcgagc ttgttcacga gcacagagct gggctttacg      4560
     tctccagccc tataatttcc aaataaaaca catccatgga gtgaataaca tatcagacgt      4620
     actatctcga ttatgtgcca aggaggacgc gcccttcgat gaaagtactc agcactttct      4680
     ctgtgccata gggaaattgc cagatgctat aactctcgaa gagatccgtg acgaaacggt      4740
     acgcgatccg acgctcaatg gagtaattga agcaatgaag acacagaagt ggccatcaga      4800
     tcttttccga taccaagctt ttagtagaga attagggttg attgacggta tcgtggtacg      4860
     cgaggacaga attgtattac cattgaagct gcgacgacga gctctggaca tcgctcatcg      4920
     ggggcatccc ggagttgttg caatgcgtcg gaatttgcga caatacgtat ggtggccatg      4980
     tatggataga gatgttaacg gtgctgtaac agaatgtgtg agatgtacag ctgtaagtag      5040
     tctagatcca cctgaaccta tgagccgcaa gatgatgcca gaaagagcat ggcaagagat      5100
     tgccattgac ttcttgtgtg ctaaagagtt tgcaacgttc ctggtcgtgg tggactgcta      5160
     cagtcggttc ctgcacgtag ttgaaatgaa gaacacaact gcgtccaaaa ctattgatgc      5220
     acttatgaaa atcttcaaag accacacata tcccgagtcg attcgttcgg ataacggccc      5280
     accgttttca agcgaagagt tctcccgttt ttgtgccagt aaaaatatca agttggtgaa      5340
     aaccatacct tattggcctc aaatgaatgg catggtggaa cgtcaaaacc gagggatttt      5400
     gaagtcactt cggatttcga aagctctcaa aacagattgg agaaagtgtc tagaagacta      5460
     cgtgtatatg tataatacaa ctccccatgc cgttaccgag aaagctccgc tggaattgtt      5520
     aactggccgt ccagtcaagg acctgctacc ttctctacgg actgatcccc attggtgtcg      5580
     agatgaaaat actcgggaaa atgacgcgat gaagaaaata cagggcaaga tttatgcaga      5640
     tcatcgtcga cgcgctaagg aatgtgaaat caccgctggg gatatagtga tgatgaagag      5700
     ttacgagcct ggtaagcttg aaccaaattt cagaatggat aagtttaccg tcctagagcg      5760
     agcaggtaac gatacaatta tcgttaatga agacggggtg aaatacaggc gaccagtttc      5820
     ccacttgaaa aagtagccat cttcagcatt atcttccgcc gtttctgatt cttccacaga      5880
     cctccagcaa ccttcggaac aggagctaat gcaacaggaa cccacggagc aggaacaccc      5940
     agaaccgaag cgaacagaaa aggaacccac ggtacatgat gctacagaac aggaatcctt      6000
     ccagaagaca gtccgtaatg agaacgccac aaccaaaaag gaggaagtac cgaaagcaaa      6060
     gaagcaatgt ttatcacgca agcgagccaa agaacaaacg aacgatcaag gagagcagaa      6120
     tcgtccttct cggacaagga agatgcctaa gcgatacact taattttttt tcttcaatta      6180
     tttggatgtt ttgttttgga gggactagga gaagga                                6216
//
ID   Gypsy-547_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-547_;
KW   Gypsy-547_AA-I; Gypsy-547_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-205
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3171-3171 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 205 BP; 62 A; 27 C; 64 G; 52 T; 0 other;
     tgtagggtcg agagattgag agtgaggaca gtgggactgc tagagagtag gttcaaacaa        60
     agagagtagc ttaaggcgtg agagtacgca tgggttgaat tgtaaaacgt acgacagttg       120
     gaaatatacg gttgagtgat tcagacgtgt tcggtgcgta ttattttatg agtgaagtga       180
     aaactcccta cgactggatc ctaca                                             205
//
ID   Gypsy-548_AA-I repbase;    DNA;    INV; 6146 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-548_;
KW   Gypsy-548_AA-I; Gypsy-548_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6146
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6146
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6146 BP; 1868 A; 1177 C; 1497 G; 1604 T; 0 other;
     atggcgcagc aaacgcttcc agagggtaag ttaaattaaa gtgaaaatta gtggaattaa        60
     atgcaaaaag ttcagctgtg aaataaggaa gaaggaaata ttggcaacgt taggatttga       120
     taatttggtg agggaacggc tcccgcgtgg ttactataat ttcaattgaa ttggatgttg       180
     gattcaaaat ggtggatttg ctatgaaaag ttggaaccgg aactgaagca tgaagagata       240
     tggaagactg tgaaagtgat ttcgatgata agatcggaga aacatttcga cggaagggcg       300
     ataaatgttt gcacagtgga aagatatttt aaattcattt tgacggaagg gcaaaatgaa       360
     aaatcttcga tgcatgatgt tctccgacgg aagggcggaa aacagaacta attcgtaatg       420
     taagcaaaat tgcgttagct tttccgacgg aagggcggaa aagcagaatg aaattaagtt       480
     tgagaacgtg tttccgataa atggccggat gggacagttc aggactatag tgcaattact       540
     gagaaaaaaa aaaaggtgaa gaaatggctt ccgcgtggta attctgatta tcgatttgat       600
     tggatgttga attcaaaatg gtggaccctt tagcattgat ataaaatact tttaaagtga       660
     tacgaagatt ggaggtatat tttcgacgga agtgcaacaa aattttgaaa attggaaaga       720
     gattttaaat tcattttgac ggaagggcaa aatgaaaaaa aaaaaaaaaa atcttcaatt       780
     tcgggtgttc gtcgatggta ggacggaaaa cagaagtaat ttataatttg agcataattg       840
     caattgcttt cccgacggag gagcggaaaa gcagaatgaa attatgtttt gagaaattgt       900
     ttccgatagc tggatgtgcc agttcatgac tacagtgtta ttatttggag aaagtttggt       960
     atgaaattgt gaattgccct cccaaataaa gaggaaataa aaaattattg aatggatctt      1020
     ttaaagaaaa tacaattatt tggcttttga ttcagcttag gcaataattg gaaaactaat      1080
     gaagcatgtg aattgttcat agcaccaatg aaagatacga tacttagtag attttctcat      1140
     ttcctttata gtgaaccatc acccaagaag aagaaagtta aagtgcccaa ggcgtcgaag      1200
     tctgataaag tcaaggcatt gagcaaagag cttgaggaat ccaaggcccg tatggcagca      1260
     ttggaagagg cgttgcagca ggaacgtgcc gagaagaatg ccttgaaagc aagcgttgac      1320
     gagttcaatg catccaatag tgttactgag gaaagcagtg ttgacttcga cggagcgcca      1380
     aggccgtcta gtacccgccg agcggcaacg acagcgaacg ttggagaacc ccgtttcact      1440
     gcaagaccgt ctggtacacg ccaagtggcg acgacagcga acgttgaaga atctcggttc      1500
     atggcgtctg tgaatcagct ttcggtgtcc tccttgaacg ttccagagtg tgtcccattg      1560
     gcagatgatg acgacatcaa cagacactcg ttcgagatgt ggaaagacct tttgattgat      1620
     tcgatgaaac tggccgggat tgaggatgaa tcaacgcagt tcatcctctt caaaatcaaa      1680
     gctggaccac gactattggg actgttcaag aatacagttt ccactgagga tgctccatgt      1740
     gcggagacca gaccattctc gaacgctttg caccgtttga aggcatactt tggctcggga      1800
     tctgacatca tgctacagag gaggaagctt gcgctgatgt cccagaagcc tgaagagtcc      1860
     gacctgcagt ttgttaatcg agtagcggca acagcaagac tatgcgagtt caatagcggc      1920
     aaggagttcg aagaaatctc gggaaccatc gctggacagg cacgtaatcg cgatgtacga      1980
     acagcggcac tgaagatgtt gaacaaaggc ggttcgatta ctgacttgat tgatcagata      2040
     cgcgagatcg aaaccatccg tctaaatgag gagtactaca ggcagaaaca catccaagcc      2100
     gagccggctg ttatcgcgcc aatcagagca gactatccca ggaactcagc attccgtaat      2160
     cgtttccagc cgtatcaatc aacaactatc tcgcgttcct cgggtaactc acgcttcgga      2220
     gagtttgcgg gaaggcgcaa cagtcatcgt gacaggactg gtcatcgtgg aatgagctac      2280
     aatcgtggag aaagatgttg gagatgtggg aatgtgtacc actctccatc cgaatgccca      2340
     gctatcgata agcaatgccg aaattgcaac aaagtgggac attttcagcg agtttgccgg      2400
     gccccaagcc gaccgatccc atctaatgaa ttcaagccgg aaccaacaga agcaagcatt      2460
     cagaagatag cagcagtcga agagttggag acagaaacaa aatctgagaa agtaagtgat      2520
     gtactggaaa attgaaatct tttagcgatt cctgatcttt ggttgataga tgttgtcgtt      2580
     ttctttatga ttttaatttg aaatacttat gatagatgaa taaaatgaat tcgaacagta      2640
     ttttaactgt ctttaaatgt aatgctaggg gcagaatgag ttttaaaata cgacattttg      2700
     tacgattcgt caacaagctg gaaatcaact gcatcagttt tcaaaaaaga gctttttttg      2760
     tgctttctga tattaatttg gcctttaatc cgtcgcaggt tgagatcgtt agagtcgtgt      2820
     cgtcgtcgtt tgccctgaaa gatgaaggga taatatcggc aaaagttgcc ggaatggagt      2880
     gtcagttttt aattgattca ggcgcacacg ttaatacttt cacaaacgga ttattcaaaa      2940
     tgctaatgag taatggagat tactgtggct cggtgttcaa ccttcaaaac aaatctgatc      3000
     gatctctcag agcctatgcc acagctggtg agatcccagt tatagctacc ttcgaagcat      3060
     atctatttat ctcggacgat cgtccggtgt taatggaaaa gttttacgtg gtagacgagc      3120
     agcgttcatt gttgagtaga ccaacagcaa ctcgttattg tgttctaatg cttggcatga      3180
     aagtccctat atcaaccgag gaacatgatg cttggaatga ttcgagattg cagtcagtag      3240
     acatattgtc tgtcagcgat accaccccgt tcccaaaatt taatattcca cccgtcagga      3300
     ttgattacaa cagagacatg gccccttgcc ggaatatatt taccaacatc ccgttctgca      3360
     ttaaaccact ggtactacaa agactcaacc agttgatagc tgcggaaatt attgagcccg      3420
     tatctgacga aatggataga tcgttttgct catccatgct cgttgttcca aagggtaagg      3480
     aggattttag attagtgatt gacctgagag gtccaaatca gtacatctat agaactccat      3540
     tcgttatgcc taccctggag aaaatactcg tggagttaca tggttcttgt tggttttcga      3600
     caattgattt gtcgaatgcg ttctaccata ttgaattgga cagagaatct cgccatttga      3660
     caaacttcta cacggaattt ggagtattta gatgcatcag gctcccgttc ggattatgta      3720
     atgcccctga catattccaa gaggttttgg agaaaactat cttaggtggc tgtaagggcg      3780
     ttatcaatta tctggacgac gttctggttc atggaaagac taaacaggaa cacgacgcta      3840
     atttggcaga ggttttatca cgccttcaaa gtcacaacgt ccgactgaat gattcgaagt      3900
     gcgttttcgg gacccagtca gtcaaattcg tagggtttgt cttgaccgcg gatggatgga      3960
     tggtagaacg tgacaagata gacgccatca agaatttccg aacgccaacc aattgctctg      4020
     aggtaaaaag cttcttgggt ttggtaacgt tcacggacaa gtttatacga aatcgtgcgg      4080
     acaaaacaca acaacttcga aaactggcga atgctgaaaa attttattgg acttctgagg      4140
     aggaacgtga gtttaacttc ttgcggaacg atgcgttaaa cgatataaag aaactgggct      4200
     actatagcgt cacggacgac gtcgagctgt ttgttgatgc ctcgccaatg ggattgggcg      4260
     ccgtagtagt tcaatacggc ccagatgctg atccgaggat aatcgcatgc gcgtcaaaag      4320
     cgttgactac gcccgagaaa cgttacccac aaacgcaaaa agaagcgttg gccgttgtgt      4380
     gggcggtaga acgtttttcg tactatcttt taggccgctt cttcattatc cgtacagact      4440
     cagaagccaa tgaatttata ttcaattcac aacatcgtct agggaaaaga gctgtttcca      4500
     gggctgaatc atgggccttg aggcttcagc catatgattt tataatcaag agagttcctg      4560
     gtgaacaaaa tgtggctgat gccctttcaa ggtttgtgga gttctaaaat gctgttgatg      4620
     gtttggaagt ttgatgatat attttattct tttcttggtt tagattaatt caggacaccc      4680
     aaaatccagt tccgtttgag gaagaagatt caaacaactt cctctataca ttggattcag      4740
     ggtgcatgga gatcacatgg gatgacatcg aaaggttttc tgaacaagac gtcgaactac      4800
     tgggtgtaaa ggaagcagta caaacgcatc gttggcctga gaatttgcgt aaatacgagg      4860
     cccacaagaa cgaactacac ttcctgggga accttgtttt taagagtgag tctacagttc      4920
     taccaaaagc acttcgtacc caagcaatga attcggctca tggcggtcat gtaggggaag      4980
     tcgcaatgaa aaggatcatg cgtagattct tttggtggcc tggaatgtca caagatgtaa      5040
     tccggtttgt gaaaagttgc gacacttgtg ctgtcttatc tcgccaaaat ccccccatac      5100
     cgttgtccag cagagaactt cccgaagggc cctgggagat catccagata gatttccttt      5160
     ctattcctgg aaccggagtc ggcacttttt tggcagtcgt tgacacctat tctcgacact      5220
     tgtcagttat tgagatgggt cacaccgacg cggatagtac caataaggcg ttatgtcaag      5280
     cttttcggac ttggggatgc cccgcaatta tccaaagtga taatggcccg ccattccaga      5340
     gtacggcgtt catcgagttc tgggagaaaa ggggagttaa ggtccgaaaa tcaatcccta      5400
     tttgtccgca aaagaatgga atcgtcgaaa gacaaaatca gggattgatc aaggcagtag      5460
     ctgcagcaaa gttggatggc gtaaactgga ggcaggcatt acagaattac gtccacaatc      5520
     ataacacaat cattccccat tcgcgactag gagtcacgcc tttcgagctg ctagtcggct      5580
     ggagatatag agggactttc cctagccttt ggagcgattc tggtactaaa gtggtggatc      5640
     gtttggatat cagagaacga gattccgaag ccaagcactt gagtaagctt cacgctgacg      5700
     cggcacgcgg tgctagagaa tccaacattg atgtcgggga taccgtgcta atggcccaac      5760
     agaagaaaac gaaagtggat ccaacattct catcggaacc tttcacggtg atagctagag      5820
     aaggagctaa ggttgtagtg gtgaatagag gaggcgttca atattcgagg aacgttcagg      5880
     acgtcagaaa atatccgtca cattttagca cggaagaaac ggtaaacttc gaagatcaat      5940
     tgacggaatt acaacctatc gtcagagaag aatcaattat atccccggaa aattttgaaa      6000
     actccaacac agttacccta aaaatccagt ctgaaatgaa agcgccttcg agagtcttgc      6060
     gacaaagagg aaatattcga aaaccgtcac gatttgatga caatttcctg tacacagttt      6120
     attgttagag tagaggagag aaagaa                                           6146
//
ID   Gypsy-548_AA-LTR repbase;    DNA;    INV; 677 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-548_;
KW   Gypsy-548_AA-I; Gypsy-548_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-677
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-677
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3172-3172 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 677 BP; 210 A; 115 C; 164 G; 188 T; 0 other;
     tgtgggaaat gagatgggtg tgtaattcta aaataaaaaa aatgtataat ttcaaataaa        60
     accacaaaca aaatatattg attaataatt ttgaaagata atgactgatc caagtttaat       120
     tatttagtat ttttccgtgt atcatacaat ttcagtcaca ggggtttaca ttcaatctat       180
     caacggaagt tggagaaagg aaaagaatcg taaatactcg attccacgaa gaaccatcga       240
     aaatctacaa acggtccccc gatgcgatct tcgtgagttg cgctgcgata gtacaacgtg       300
     agagcgtgtg tggattgcga gaggtaatgg accgcacgag tggtttgtat cggttagtgt       360
     gcgtggaatg tgagaggata attaatcata cgagtgatgt gtatcggtga gtgtgtgttg       420
     tgaggtgctc ttcctcatgc aattcccgat agcctcttgt cggaaactgc ttgtatgcat       480
     ggattgaaga gaaaattctc tctcgctcca agagaacagc caacgcagga cagggttcgt       540
     gagaaaatta tttggaatga ttcgacattc atgtgactac gtttacggag tacggtcgag       600
     tttgtttaac accgcgatgg aacgacggca gtatgccaaa tcggctaaat cagcccaatc       660
     ggctgatggt taccaca                                                      677
//
ID   Gypsy-549_AA-I repbase;    DNA;    INV; 5780 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-549_;
KW   Gypsy-549_AA-I; Gypsy-549_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5780
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5780
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5780 BP; 1812 A; 1082 C; 1362 G; 1521 T; 3 other;
     ttggcgatcc tgccatgaaa attgattctg gttcaacata ttgtttaagt ttgtgttcaa        60
     gctgaatttg agttacgttt tggatgtaat ttattgattg catgcagcat aataagtgcg       120
     ttttcgaacc taaagaaaat gtgaaaatct gtggaaagag aaagcttaat cgagcggatg       180
     aaaaaaaaaa actgagttgc cagtgagaga aaaagaaaaa cttgcgttga gttaagctca       240
     taaccaagtt atttcactaa atgtttgcgc agagttaagc tcattgccaa acagagttgc       300
     gccgggtaaa gcccatggcc aacgttcaga acattgcgcc gagttaagct catggccaaa       360
     gatcaaaaat gtataggatt ttgtaggaac tgagttaatc tcatagtcca aataatgtta       420
     aaaacaaaac tggcaacact gcacagaaat cgctcgcaca ccgatgagaa taaaaacaaa       480
     actgttaaaa ggaataaaga gaaagaatga agtagatcac aatgaagctt ttgtggtact       540
     ctatcaaaag tatacgttgg tggttgtaca tatctgctta tcaataagaa tatatactaa       600
     cgtgtagaag caaaagcaat ggctatgtat tagtaagaga ataaaacgta aacgaaaatt       660
     tcctaccaca tcagtaccac tacagtgatt tatacggtcg ctcataagag cacgctcgtc       720
     gctcacttgt agttgtgaaa cattttgcac ctcgtaagga tgttgcacac tgaatagttt       780
     tctcaccttg gtatatacac gaaaaaaaaa atgtagtctc attgcgcgca gatcactgaa       840
     tttgttgtta ttgctgtcat ggtagtagta tacacatgta taaggctgtt cataccataa       900
     agagagaagt gacaacaaac cagttaggag tagaagttgg tgttagtcaa cgtgtttttt       960
     tttctcgttg atgtgaccgg taatcgtagt cgtcgtaatt atttcaacgc catttttgtt      1020
     aaacgtactt agtgtttgaa gagccgtcga tagtagaaac ccgcatttta aaagttcgag      1080
     agttgattcc agctaaaatt gtacgaaaac tctaggttta ctaagagaaa atatggttga      1140
     acataattgt tgtgcttatt tcaggcgatg agtggagatt ggcgtgaaag cgatgtttcg      1200
     agttcagacg aagcggaggg cgatggagcc gtcggcctga caacggagct cgttccgtgg      1260
     ttgagaacca acgcatatgg tccgaccgct gtgccaaaac aagagggtcg tgactgcaaa      1320
     agtaaaacta ccaaatcgga gtggctgtct ggctcatggc cgttgcgtca gtttgatgaa      1380
     tcattaccta ccaacaagcg caaagccgaa tggcttcgct tccgagacca attcgaacga      1440
     attgtgtcat gcaaatcgcc tgtcgatgac gtcaccagac tgacaggatt aaaaatcttc      1500
     gctgggggct atcttcttag cattatccaa atgcaagaaa agcgactgct aagttcagag      1560
     gcaaacggag cggaagactg gtacggccta atcatatcgg ctttggataa atattttaac      1620
     gagatgtgtg acactacaaa agaacggatg aagtttcgtg aaatgaaaat gagagcagac      1680
     gaggcattcg cggactgggt tttacgtttg gaatctcaat cccagttttg tgagttcacg      1740
     ggagagcagc gtagagaaga acttgtgcaa gcattgttga gacgatccgt tccggatatc      1800
     gccggaaagc tgtacgaaat gtccgatatt tttgaaaatg acgtggataa gattatcagc      1860
     catggaaagc acctcgatta tataagaaag gagatcgacg aattgggatc tggaacatca      1920
     agccatcaaa acaccaacga aacccggaag gaatcttcgc aggagtcgga gtggaaacca      1980
     gtcaacgctc tacattcgaa gaagtttgca tccaggaaga atcgttttgc gccttatcat      2040
     acgaatgccg acagggctgg tacaggatat tttcgaaacc gcaccgatcg cgttggatac      2100
     caaaattacg atgcaactag ttgtgcacgt tgtggtcgtc gacatgatgc cggtcagtgc      2160
     cgagcgtttc gagtaagatg cttcaaatgc agtaaaatcg ggcattacgc agagttttgc      2220
     cgttcatcag tgacgaactc caggaacgat aattatagag atgttaagag agaggcagca      2280
     aaaatcaacc aggtagaata aatatgtttt tgtagtactg gttgatatga atcttgtaat      2340
     gcatcgacta acgcaaataa aatatttaaa cggttttttt tttctctgtt ttgtagttgg      2400
     tcacaggaca ttcagaatca ccgcctgaca accgcagcaa tgatattgat cctcggtatg      2460
     tagattgcgt gattgggtca gagaatttca gattcttggt tgattccgga gccacggtga      2520
     ataccattac aactcagggg tggcagatgt tgagacgaaa ttgtccaacg gtttttcaag      2580
     atttaactgt tcatcctgag gacgtcttga gaggatatgc aaatcaacga ccgctagacg      2640
     ttgtatgctc attcaatgca tacgtatcgg tggtaggcca tggtcagtca aagatattgg      2700
     caaagttctt cgtagtgaac ggaacgaagt tatcattgct tggatttcca acgtctagca      2760
     aattgaactt gatccacata ggtctcccaa acccaaagga cgaaaatatc aacttcattg      2820
     atggttataa tatgccgtac gattcgcgca caaaagctaa agagtttcca aaattgtcca      2880
     taggaggagt acgattcaaa gtggatagtt ctgttatccc aaagcaaata attcggtata      2940
     acgtaccaaa agcattcgaa gatgcaatca acgatagact tgcggacatg gaggaaaaag      3000
     ggattattga aagggccgat aaggaggatg atatcattac attcgtgtct ccaatggtgt      3060
     tagtaccgaa aggtgctaag gattttcgaa ttgtcattga ctatcgagaa gtcaataagg      3120
     ctatagtccg tgagccatat cccatgccgt ctttggaaaa gatatggact gacattccac      3180
     ataacaatgg ttcgttgttc ttttctaaac tggacttaaa agacgcatat tttcacgtag      3240
     agctacatga agatgttcgt cacgtaacta cgtttatgac cgcaaacggt ttaatgcgtt      3300
     ttagaagatt accctttggt ttgtcgtgtg ccccagaatt gtttcagcgg gccatggaga      3360
     ggatactgat aaattgcaag ggcattattg tatatctcga tgatgtactg gtattcgcgc      3420
     cttctttaaa agagcttcag agcaatgtac aaaaagttga aagcgtgctg aaaagtcata      3480
     atttgactat aaacgaggaa aaatcgacgt acaaccagag aacggttgaa tttgtcggat      3540
     tcaccctgga tggaagtggc atattaccca caccaaataa gatttcggat ataatgcgtt      3600
     ttgaagaacc caaggatgta tccgaagttc ggagtttttt gggcatgctt acgtttatca      3660
     gtccattcat caaaaatttt tcccacatga caaagcccct acgcgatttg ctcaataaaa      3720
     ccaccaaatt caagtggact gagctacagc aatttgcatt cgacgatttg aaacgtgcgg      3780
     cacaaaacga tttggtaaaa cgaggttact ttaaggacga agatcagacc atgctataca      3840
     ccgacgcatc tccatgggga ttaggagctg ttttagctca ggaagactct gtgtccatgg      3900
     agaggcgcat aatagcatgc gcatcgaaaa gtttgactga cgttgaaagc cgatatccgc      3960
     agttgcaccg tgaagcgctg gccattgtct gggccatgga gagatttgca tactatctcc      4020
     tgggacgcaa gttcacattg cgatctgata gcgaagcgct tatgtttatg gtgaagacga      4080
     gacagcgaaa ggatgtaggc aaacggatta tgtcgcgtgc cgagagttgg tttttgagaa      4140
     tggatcattt tcactttgac ttcgaacatg tgtcgggcaa ggaaaacatt gctgatgcag      4200
     cgtctaggat tggtggaaag cgtaacgaca cgcaattcgg cgcagaaaaa gaaccacatg      4260
     agttgtgttt agttgaagca gacttatata atatcaacga tcagctttta gctctgacct      4320
     ctacacaggt aaaatcaaaa tttgtttgcg ttggtttaag agcggagcga tagttttktt      4380
     ttctttaata aaaattttag gtwcgggagg aatcattgaa agacgaagaa ttgcagacag      4440
     ttgtgcagtg gctggacaag gatgaaaaat ggccaccgag tatttcaaag taccaacctt      4500
     ttcaacgcga gatgtatgcc caaggaaacg ttctcctaaa acaagaaaaa ctcgtgcttc      4560
     cttctacatt gcgtagacgg gctttaactg tagctcaccg tagccatccg gggatgtcta      4620
     caatgaagaa ctttttgagg caaggtctat ggtggccgaa catggatcgt gaggtggaag      4680
     agttcgtgaa aagttgtcct gagtgccagc ttgtcatggc caacagtaaa cccttgccaa      4740
     ttacattgac ggagctccca aacaacccgt gggaatacgt ttctatggat tttgcttcat      4800
     gttcggatac aatgaattgg aaagcattag tgcttacaga taactattcc aggtttctag      4860
     tagcattacc catggaaaag acagacactg aagctgtcaa acggatctta cgtcgtattt      4920
     ttaatgctta tcatgcaccw aaaaccctaa aagctgataa tgggccacca tttaacagct      4980
     tggatttgca aacctggtta agagatgttt ggggcattaa actgattcgt actacaccac      5040
     ttaatccgac tgaaaacggc cttgtagagc gaagtatgca aggaatcaac aaagtagcaa      5100
     ccatagcccg gcttaaaaag caaaattgga aggattccct tgccgactat gttgccgctt      5160
     ataactcttg gcctcacaat gtaactaaag ttcctcccgc cgaattgatg ttcggaaggg      5220
     cagtgaggag cttgttaccc aacgttaaag tcgatgctgt gcagtcacta gatggagagc      5280
     tacgtgatcg tgatcgagtt gctaaatttg atcgtaacgc aagggaagat aagaagcgtg      5340
     gtgcacatct aaatgaaatt caggttggag atatggtatt ggttatgcag cagaaaaagg      5400
     ataaagcgga cacaatttat aagaacgtga tacataaagt gatcaagatt tctggtgccg      5460
     ggagggctac ggtaaaagat atgacgactg ataaagagta cgaccgtaat atcaaaatgt      5520
     tgaagaagtt tcatgctcta cctccgcaag aaacatccgg atcgataaac cttgaggatc      5580
     aacatgagtc gcaagtatcg aaggacatgc ttactccaac attggcgcaa ccttcaagac      5640
     aggattcgga caacccggaa tcgaatccca agagacgaag cttgagggac ataagacgac      5700
     caaagcgtta tcttaatatg tgcgaggaat ccagtgaatc atcggagtaa aacagtttac      5760
     atttcttatc aaagggagga                                                  5780
//
ID   Gypsy-549_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-549_;
KW   Gypsy-549_AA-I; Gypsy-549_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-154
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-154
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3173-3173 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 154 BP; 49 A; 18 C; 42 G; 45 T; 0 other;
     tgtggtatcc ttggtccatg agtgaacatg actagattac aaatgtatat gtgaactaaa        60
     aagaggttga ataaagacta tttgggagtg gagagctaac gggttttcag tctgtgtgag       120
     cggtctgaag atggaggtta tttaaaatac caca                                   154
//
ID   Gypsy-54_AA-I repbase;    DNA;    INV; 7046 BP.
XX
AC   AAGE02021233;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_AA_;
KW   Gypsy-54_AA-LTR; Gypsy-54_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7046
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021233; Positions   26723   33768.
XX
CC   Positions [4253-4789] - Reverse transcriptase
CC   Positions [5963-6430] - Integrase core
CC   'GGATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2109..3317
FT                 /product="Gypsy-54_AA-I_3p"
FT                 /translation="MLHSNYRRTSKKKLRKALTAAIHENTMLREKLFQLQS
FT                 QQIGSEFASAPSSTLREGASTSTNTGNESLLMTTMNNMTISSLNVPECKPS
FT                 EGETEIDKAAFEHWKEVLMSAMDLISATDERSKMAIFKIKAGSKLLEIFNS
FT                 TETTENMPDEYETPFSNAIVRIDEYFGSRAYTLTQRSKLLIMSQKANETSV
FT                 QFIRRVGAAAKLCNYRSDEENEAIMRTVTKGATDSRVRTLAHRNWVSQRSL
FT                 KDLIDAVRDWEVEQSNENDFQRSQRVATIAAVAQGPNDRFKPSNEFKMRNA
FT                 VQWHSDSRRTGWHNEERRSNFRSGSRGRGGFRQVNPSSQSNSRCCRCGSIY
FT                 HMEAECRMKHKVCNSCGKLGHISRVCRDPSMFNKQTRAQKRNWSNRQRCYC
FT                 LDCQDSKVG"
FT   CDS           join(3521..5389,5393..6865)
FT                 /product="Gypsy-54_AA-I_1p"
FT                 /translation="MHMQKKMGTVLIRYVRCTLQVSSSVSVSADVLGEITI
FT                 QKEVHDIENLPILNHKQTERDAIISAKVAGVEISFFIDSGAQVNTITKHYF
FT                 DEILANEVSAEQLRDLRFSTDKPLRAYASDVNIDVVAQFSAELYISEDRPV
FT                 FMETFYVVDEIRALLGFNTATRYGVLAVGLNVNVCKWTEDPWKCELGNIRT
FT                 VTTPPLKQFPKFNIPPVCLSYDKEMPPARNVYTHIPPAFKDQTTQKLNNLL
FT                 QTGIIEVVTPEMDRSFCSSLLVVPKGKDDIRLVIDLRGPNRCIHRTPFKMP
FT                 TFESIVMQLHGAKWFSTIDLTNAFFHVELDESSRHLTNFFAGDGLYRYRRL
FT                 PFGLSNAPDIFQEIVQVGILNGCKGVVNYLDDFLIFGATEEEHDNNLAEVM
FT                 KRLENHNVQINLKKCAIHQQEVDFLGFKLSSEGWKVESEKYSAIQNFRRPV
FT                 TIAEVKSFLGLINFVERFIPQRADRTRKLRELAKSETLYWNEELEEEFEYL
FT                 RNEALNKISTLGYYSRQDRTELYVDASPYGLGAVLVQFDKDSVPRVIACAS
FT                 KALSTAELKYPQTQKEALAMVWGVERFSMYLMSISFVIRTDAESNEFIFNG
FT                 MHRIGKRAVSRAEAWALRLQPYNFRIILFAKVGILIIYTYTFFHIIIYRVE
FT                 RVSGDMNVADALSRLVIQSQSETFDEANDRHLLFHIDAGSLEISWNEIETF
FT                 AESDEEFSKVRLAIQSGFWEPGFRKYESQEKELRILGSMLFKGDRIILPSA
FT                 LRDKAIQSAHRGHVGIGSTKRILREYFWWPGMSSEAASFVKQCETCLQLSR
FT                 KNPPIPLTSRELPNGPWEILQVDFYTDKEFGHGEFLVVVDTYSRYLHVVEM
FT                 RSIDADSTNTALNQIFEVWGLPLAIQSDNGPPFQSEKFVRTWESKGVRIRK
FT                 SIPLHAQSNGAVERQNKGIKDALAASKLDNINWKLALEQYISVHNKVRPLS
FT                 RLGVTPFELLVGWKCRGVFPCLWETNCSEIDRNEIREKDADSKLQSKQYAD
FT                 FKRGAKESSIKVGDVVIVSVAKRLKSDPTFGSERFTVVARQGAKIVVRSDR
FT                 GVTFSRNLQDVKLAPQQPREISDDRTIDQNDLFDSRPQRSRKLPNRFNDMH
FT                 LYHIFQ"
XX
SQ   Sequence 7046 BP; 2368 A; 1195 C; 1594 G; 1889 T; 0 other;
     ttggcgcaga agtgcctccc aaaaagtaag tattacaata gattcaaatt aaaggaaact        60
     gaagtgatga gaagatgatg ataacgtaag gcgtaaaatg gaagttttgg aacaaaaagg       120
     gctgaaatac cggatgcaga gcgggcgaga tcagtaaaga aaataatcgt cggattgtaa       180
     gcaaaaataa tgaaagagat ttggttgaaa agttaagcta gaggaaaaag tgttttttta       240
     aatatgattg tggaaattag agctgctttt gcaattaatt gttgatcatg aataacgcta       300
     aacagttatt gaaaagaagc tggcgagaaa aaaaggactg cttcgttaat attaaatatg       360
     caagctggcg agttaaagga ctgcttgcat gatggaaata attaaaacaa tgagatggtt       420
     aatgtatacg gcaagcaaga tggcgagaat aaatgaaaag ctggtgagac aaaggactgc       480
     ttcttcatta tttaatacgc aagttggcga gtttgaggac tgcttgcatg atagaaaata       540
     tataaaaaga ataaatttga ccgatgtgtt tagcagacaa gctggcgagt ataaggactg       600
     cttgtcgaaa taattgaata aactgtgtaa attatgtgaa ttagtaactg aagagaagct       660
     ggcgagacaa aggactgctt cttcgatatt taaaacgcaa gctggcgagt ttaaggactg       720
     cttgcatgat agaaaatata ttaaaagaat taatttgacc aatgtgttca acagacaagc       780
     tggcgagaat aaggactgct tgtcgaaata attgagttag gtgtaaatta tataaattag       840
     taaccgaaga gaagctggcg agacaaagga ctgcttcttc gatatttaaa acgcaagctg       900
     gcgagtttaa ggactgcttg catgatagaa aatatattga aagaataaat ttgaccgatg       960
     tgtttagcag acaagctggc gagaataagg actgcttgtc gaaataattg aataaattgt      1020
     gtaaattatg tgaattagta actgaagaga agctgtcgag acaaaggact gctttttatt      1080
     attgaatacg taagctggcg agtttaagga ctgcttactt gatagaaaat attattaaat      1140
     aaaaggacgt tgttttcggc agacaagttg gcgagaataa ggacagcttg tcgaaataat      1200
     tgtcttagat gtaaataatg tgaactagta actaaagaga agctggcgag gcaaaggact      1260
     gcttctttat catttaatac taaagctttc gtttctaagg actgcttgca tgatgaaaag      1320
     tataaaataa gagagatagc cgatgtgact agtaggcaag ctggcgaggg taaggactgc      1380
     ttgtcgaaat agtgggtttt aggcgtaaat tatgcggaat agtaactaaa cacatacgac      1440
     tgcttcgttc acatttgata tgcaaactgg caagtttaaa gacttctgat ggaagcatga      1500
     tggtaactat gaaacaaaaa aaagtgatta cctatgtgtt tgtcaggtaa ggtagtgaaa      1560
     gtgagcactc ctggctaaaa cgaaaatttt aacgttatat gcagaacgaa gattcaaaaa      1620
     taaaagagat gctgcttcgt ttaaatatta tggcctctgc ttgttatgat aaattatttt      1680
     gttgtaatag gtattaactc gagaaaatta ctttatctaa gcggacgaag aataaagatt      1740
     gcttgtttat ttgtaaaata tgcaaacgat aataagaact gcttgttggg ataaaacaaa      1800
     ttttgcagct atatattaca agaactgata tatatataaa aaaaagagta gcgctaatat      1860
     tcaacaacaa aaataaagaa cctaatagaa agctttactg tgattgtaat atatccaaat      1920
     ggaatgaact ctagaaaatt taaccatatt tttgaggttc ttaaagaata caattatatc      1980
     ccgtcgctat tgatcaacaa aagaagagga atctcctcgt aatttaatta caaaacattt      2040
     aaataccttg aagtgtaatt tttttatcaa aatcaaaact tgtgattttg ttttctaatg      2100
     caatttttat gttgcattcg aattacagga ggacttctaa gaaaaaactg cgtaaggctt      2160
     tgacagcggc gattcatgaa aacacaatgt tgcgcgaaaa gctttttcaa ttgcagtcgc      2220
     agcagatcgg atctgagttt gccagcgctc catcgagtac gttgcgcgaa ggcgcaagta      2280
     cctcgacgaa cactggaaat gaatcactat tgatgaccac catgaataac atgactatta      2340
     gttctcttaa tgtacccgaa tgcaagcctt cggaaggcga aactgaaatt gacaaagctg      2400
     cattcgaaca ctggaaagag gtactaatgt ctgctatgga cctgatttct gcgacggatg      2460
     agcgatccaa aatggctatt tttaaaatca aagccggatc aaagcttctg gaaattttca      2520
     atagtacaga gacaactgag aatatgccag atgaatatga aactcccttt tcaaacgcaa      2580
     ttgttcgtat tgacgagtat ttcgggtcaa gagcctatac tttgactcaa cgcagcaagc      2640
     tattaattat gagtcagaaa gcgaacgaaa caagcgtaca attcataagg cgagtcggtg      2700
     ccgctgcaaa attatgcaac taccgatctg atgaggaaaa tgaagccatt atgcgtacag      2760
     ttacaaaagg agctacagat tcacgtgtgc gtactctggc acacagaaat tgggttagcc      2820
     agcgttcact caaggatcta attgacgcag tgcgagattg ggaagttgag caatccaacg      2880
     agaatgactt ccaaagaagc caacgagtag ccacaatagc agccgtggca cagggcccga      2940
     atgatcgatt caaaccatct aatgaattca aaatgcgcaa cgcggtgcag tggcacagtg      3000
     atagcagacg cacaggttgg cacaacgaag aaaggcgatc gaatttccga agcggtagtc      3060
     gaggtcgtgg tgggttccga caagttaatc caagtagtca gagcaacagc cgctgctgta      3120
     gatgtggcag tatttatcac atggaagcgg agtgccgaat gaagcataaa gtatgcaact      3180
     catgtggcaa gttgggccat atctcacgcg tttgtcgaga cccatccatg ttcaacaaac      3240
     aaaccagagc ccagaaacga aattggagca accgtcaacg atgctactgc ctcgactgcc      3300
     aagattcaaa agttggatga agctctgaat ccagaggaac aggtaatgaa aacgtctaac      3360
     gatactacct gaatgttatc gtatacattg ttatcaatca tttgatattt gatataagct      3420
     cgattttgta actttcaatc attaaaatgt gttttaaata taattatcac aacaaaaata      3480
     gtagggttta aatttttcat cgtacataaa atactcgtag atgcacatgc aaaaaaaaat      3540
     gggaactgtt ttaattagat atgtacgttg tacattgcag gtatcttcga gtgtatcagt      3600
     ctctgcggat gtattagggg aaattactat tcagaaggaa gtccatgata tagaaaatct      3660
     tcctattctg aatcataagc aaaccgaacg tgatgcgatt atttctgcaa aagttgcggg      3720
     cgtagaaatt agctttttca ttgattccgg agcgcaagta aacactatca ctaagcacta      3780
     cttcgacgaa atccttgcaa atgaggtttc agcagaacag ttacgcgact tgagattctc      3840
     gacagacaaa ccgcttagag catatgcatc tgatgtaaac attgatgtgg tcgcccaatt      3900
     ttcagcagag ttatacattt cagaagacag gccggttttc atggaaacat tttacgtggt      3960
     tgatgaaata agagccctgc tgggtttcaa taccgcaacc agatacggcg ttctagctgt      4020
     cgggcttaat gttaatgttt gtaagtggac agaagatcct tggaagtgtg aattgggaaa      4080
     catacgtact gtgacaactc caccccttaa gcaattcccc aaattcaata tcccacctgt      4140
     atgtctgagt tatgataagg aaatgccgcc agcccggaat gtgtatacgc atattccacc      4200
     tgcattcaaa gatcaaacaa cacaaaaact gaacaatttg ctgcagacag gaataatcga      4260
     agtagttact ccagaaatgg acagatcctt ttgctcgtct ctcctggtcg tcccaaaggg      4320
     caaagacgat attcggttag tcatagattt acgaggacca aatcgttgca ttcacaggac      4380
     tcccttcaaa atgccaacct ttgaatctat cgtaatgcaa ctgcatggtg ccaaatggtt      4440
     ttcaaccatt gatttaacaa atgcgttttt tcatgtggag ctcgatgaaa gctctcggca      4500
     cttaaccaat tttttcgctg gtgacggtct gtatagatat cggaggttgc cattcggatt      4560
     atcgaacgca ccggatatct ttcaagaaat tgttcaagta ggcatattga acggttgtaa      4620
     aggagtcgta aactatttgg atgatttcct tatatttggg gctacggaag aggagcatga      4680
     taacaatctc gctgaagtta tgaagcgcct ggagaaccac aatgttcaaa taaaccttaa      4740
     gaaatgtgca attcaccaac aggaggttga ttttcttggg tttaagctgt cttcagaagg      4800
     atggaaagtg gaatcagaaa aatattctgc cattcagaat ttccgaaggc cagttacaat      4860
     tgcggaagtg aaaagctttc taggtctcat caactttgtc gaaagattca tccctcaacg      4920
     agcagataga actcgaaagt tgcgtgaatt agcgaaatca gagacattgt attggaatga      4980
     agaactggaa gaggaattcg aatatttgcg aaacgaagct ttaaataaga taagtaccct      5040
     agggtactac agcagacaag atagaacaga gctctatgta gatgcttcac catacggtct      5100
     cggtgccgta ttggttcagt tcgacaaaga ttcagttcca cgggttatcg catgcgcttc      5160
     aaaggctctt tcaacggcag agcttaaata ccctcaaaca caaaaagaag cactagctat      5220
     ggtgtggggt gtggagcgct tctcaatgta tctgatgagc atttcttttg taatacggac      5280
     ggatgctgaa tcgaacgaat tcattttcaa tgggatgcac agaatcggca aacgcgcggt      5340
     ctctagagcg gaggcatggg cattaagact gcaaccttat aattttcggt aaataatatt      5400
     gtttgccaaa gtaggcatat tgataatata tacatataca ttttttcata tcattatcta      5460
     tagagttgag cgggtttcgg gcgatatgaa cgtagcagat gctctatcta ggctggtgat      5520
     acaatctcaa tccgagacgt tcgacgaagc aaatgataga catcttcttt ttcacattga      5580
     cgcgggatct ttggaaattt cttggaacga aatagaaaca ttcgctgaaa gtgatgagga      5640
     gttctccaaa gtaagattag caatacagtc aggcttctgg gaacccggtt ttcgtaaata      5700
     tgaatcgcag gagaaggaac tccgaatact cggatctatg ttgtttaagg gagaccgtat      5760
     tatcttgcct tcagcgctgc gcgataaagc catacaatcc gcccaccgag gccatgttgg      5820
     cattggttcc actaagagga ttttacgaga gtatttctgg tggcccggga tgagctcaga      5880
     agcagccagt tttgtgaagc aatgtgaaac ctgtttacaa ctttcgcgca aaaacccacc      5940
     gatacctctc acaagtcggg aattgccgaa tgggccctgg gaaatccttc aagtggattt      6000
     ttatactgac aaagaattcg gtcatggaga attcctcgtt gtagtcgaca cgtactcgcg      6060
     ttacttgcac gtagtggaaa tgagaagtat agatgcggat agtacgaata cggctttgaa      6120
     tcaaattttt gaagtatggg gattaccctt agctatccag agcgataacg gtccgccttt      6180
     tcagagtgaa aagttcgtga gaacgtggga atccaaagga gtacgaattc ggaaatccat      6240
     tccgctacat gcgcaatcaa acggtgcagt tgagcgccaa aataagggaa tcaaggatgc      6300
     tttagcggcg tcaaagcttg ataacatcaa ctggaaatta gcactagagc aatatatttc      6360
     agttcacaac aaggtcaggc cgttgtcgcg actgggagtc acaccgtttg agctcttagt      6420
     gggctggaaa tgccgaggcg tgtttccgtg cttgtgggaa acgaactgtt cagaaataga      6480
     tcggaatgaa atcagggaaa aagatgcaga ttcgaaatta cagagcaaac agtatgctga      6540
     tttcaaacgc ggtgctaagg aatcgagcat caaggttgga gatgtagtta tagtgtcggt      6600
     agcaaagcga ttgaagtcag acccgacttt tggatctgag agatttacag ttgtggcaag      6660
     gcaaggagct aaaattgttg ttagaagtga cagaggagtt acgttttcga gaaatttaca      6720
     agatgtgaag ctagctccgc agcagcccag agaaatttca gatgatagga cgattgatca      6780
     gaatgatctg tttgattcaa gaccacaaag atcacggaag ttaccaaatc ggttcaacga      6840
     tatgcatttg taccacattt ttcagtaaat aagtaaaagc aaacagtcat gtaaatgaaa      6900
     ataaggaaat cagaaagaaa taaatggaag gataaaagtt cataaaattg ttgaagtttc      6960
     tttgattttt ttaaaacaaa atatctaaat agataaactt gattgaaata actgaataag      7020
     gaaataagag tagaggtagt aggtat                                           7046
//
ID   Gypsy-54_AA-LTR repbase;    DNA;    INV; 417 BP.
XX
AC   AAGE02021233;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_AA_;
KW   Gypsy-54_AA-I; Gypsy-54_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-417
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021233; Positions   26306   26722.
XX
SQ   Sequence 417 BP; 135 A; 66 C; 113 G; 103 T; 0 other;
     tgtagagaag tgatgaagaa gtaacaaatg acattgttat gagaaaaaaa aatccgaaac        60
     gacttcatca taaattagtc tcgattcgac attcatgtca tatccctcag aatcgggcaa       120
     cacaaactgc aagaaaacag agcatgtatt tgtgtgggtg gaatggtggt tcgattgatg       180
     ggataatgtg tgtgaatgag aaaagagtga aagtggagaa gtgtgtgtga gactcagtat       240
     tcgctcgggt aacagcggta tccgtttagg attgtgagat cattctttcg actaatgtgc       300
     tagagtacag ttgtaccaaa gtttagtgcg cgaagtgaaa aaaaaaaatg gactcggaca       360
     gcgtgtgctc cgaatccggt ggctctccag cgcgagaagt tggctcggaa cacgaca          417
//
ID   Gypsy-54_AnFu-I repbase;    DNA;    INV; 4347 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4347
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2938-2938 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           18..4334
FT                 /product="Gypsy-54_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MKKMNNPDEESRSIPQHSGVSGATAAAQFVPSSEQPG
FT                 TSSMPSTENTVLMQMMQLMQQQLSQQQQMFMQLMQDREVSTNFQPAPEQIL
FT                 DTLCSHIKEFRYDAEAGSTFAAWYTRYEDLFEKDAAKLSKEARVRLLLRNL
FT                 GTTEHDRYINFILPKHPRDFDMTETVEKLKALFGAKESLLNRRYKCLKLTK
FT                 TSSEDYLSFACRVNRSAVDFELSKLSEDQFKCLIFVCGLKEESDKDIRTRL
FT                 LSRLEDKKEITFEQFSTECQRLTNLRLDSAMIQDDSKEKVLAVKRNEKDSA
FT                 KPQEKQPSRPCWLCGAQHWVRDCSYKTHKCKECKTVGHREGYCKKPKQDKP
FT                 TKRFTRRSTKTRVVTVNVNSVQQRRKYIATYINNSPIKLQFDTASDITIVS
FT                 KATWKQIGSPKLCPPTVRANDASGGKIALTGEFTANVTIRNITKRAKIYVA
FT                 EATLMLLGNDLADLFSLWSYPIEQICANVTSEPATPGGLQQKFPQLFENIL
FT                 GLCSKSRVTLKLKQHSKPVFCPKRPVAYAMQDAVNRELERLEKLQIITPVD
FT                 FSEWAAPIVVVRKANGQLRICGDYSTGLNDALHPHDYPLPVPQDIFAKLGK
FT                 CTIFSQIDLSDAFLQVEIDECSRSLLTINTHRGLFHYNRLPPGIKVAPGAF
FT                 QQLMDSMLCGIDGVASYMDDIIIGGRSKKQHDECLQATLQRIQDFGFTIRV
FT                 EKCSFYKTQIRYLGHIIDGQGLRPDPAKVETIRKLPAPTDISGVRSFLGAI
FT                 NYYGKFIANMRTLRYPLDNMLKDGNVFRWTTECQQSFEKFKSILESDLLLT
FT                 HYDPELEIIVSADASSVGLGATIGHKFPDGAYRVIQHASRALTKAEQNYSQ
FT                 IDREGLAIIFAVTKFHKMIFGRKFRLQTDHKPLLRIFGNKKGIPVYTANRL
FT                 QRFALTLLSYDFTIEYVQTDKFGNADILSRLIDKHNKPEEDYIIASINLER
FT                 DVKSIAVNTVMALPLTFDKIEQETKVDPLLKKVSRYIQNGWPENNAFSGQL
FT                 ACFYARKDSLTKVGSCILFGERVVIPESLHQRCLKQFHRGHPGIQRMKAIA
FT                 RSYVYWPSLDKQIATCVATCQECQTAAKSSPHAEPLSWPKPLVPWQRVHVD
FT                 YAGPVEGEYYLVVVDACTKWPEIIKTHSTTATQTISILRGLFARFGCPVTL
FT                 VTDNGTQFVSESFKSFCELNGVQHLTTAPFHPQSNGQAERFVDTFKRAMKK
FT                 IHTTDMALQESMDIFLQTYRTTPNPQLDQNKSPAEVMFGRAIRTTNELIRP
FT                 NSTQPPKATLGKHRSFQKGDCVYVKVYTKNKWRWTAGVVTKRYGNVMYGTK
FT                 LIEGRIIRSHVNQMRDRAVRNHSTTKEVPSIPLDILLEEWHVSPSSNASYS
FT                 ESTEAVPSSISPVRPMPTSPRPMTTSSSEYETPPVSPVPVSALPPPSRVTV
FT                 QPKPAPRRSNRNRNPPKWMSAYRRS"
XX
SQ   Sequence 4347 BP; 1346 A; 1026 C; 957 G; 1018 T; 0 other;
     gtggcgacga ggtaatcatg aagaaaatga acaatcctga tgaagaatcg cgttcgattc        60
     cacaacacag cggcgtttca ggtgcaactg ctgcagcaca atttgtaccc tcatcggaac       120
     agccgggaac atcatccatg ccgtccacag agaacacggt gttaatgcag atgatgcagc       180
     tcatgcagca acaactttct cagcaacagc aaatgtttat gcagttaatg caggatagag       240
     aggtttccac taattttcaa cccgcacctg agcaaattct agatacgctt tgcagccaca       300
     ttaaagaatt tcgctatgac gctgaagctg gcagcacatt cgcggcgtgg tacactcggt       360
     acgaggattt attcgaaaaa gacgctgcaa agctgagcaa agaagcgaga gtacgcttac       420
     tcctacgcaa cctcggtacc acggagcacg acagatacat taacttcatt cttcccaaac       480
     acccgagaga tttcgacatg acagaaacag ttgaaaaact taaggcattg tttggtgcga       540
     aagaatcgct cctaaatcgt cgatacaagt gcctcaaact cacgaaaaca tcgtcggagg       600
     attatctttc ttttgcctgt cgagtaaacc gaagcgctgt tgattttgaa ctgagcaaac       660
     tgtcggaaga ccagttcaaa tgcctaattt ttgtctgcgg attaaaagaa gaatcggaca       720
     aggatatccg aacgcgcttg ctgtctcggt tagaggataa gaaagaaata acatttgagc       780
     agttttccac cgaatgccaa cgacttacaa atcttcgcct ggacagtgcc atgattcaag       840
     acgacagtaa agaaaaagta ttggctgtta aacggaacga aaaagacagt gcaaaaccac       900
     aggaaaaaca accctctaga ccatgttggt tgtgtggagc acaacattgg gtccgtgatt       960
     gctcgtacaa aacgcacaag tgcaaggagt gcaaaacagt aggtcatcgc gagggctatt      1020
     gcaagaagcc gaaacaggat aaacccacca agcggtttac acgacgctct acaaaaacac      1080
     gtgtggtaac cgtaaacgtt aacagcgtcc aacaaaggcg caaatatatc gcgacctaca      1140
     tcaataacag cccaataaaa ctccaatttg acacagcttc agacattacc atcgttagca      1200
     aagctacatg gaagcaaatt ggcagtccca aattgtgtcc accgactgta agagcgaacg      1260
     atgcgtccgg tggtaagata gcactgacgg gagagtttac ggcaaatgtt acgatccgta      1320
     acatcactaa gcgtgctaag atttacgtag ccgaagctac attaatgttg ctaggtaacg      1380
     acttggcgga tttgttttca ctgtggtcgt atccgattga gcagatttgt gcgaatgtaa      1440
     ccagcgaacc tgcgactcca ggaggattgc agcaaaagtt tcctcaactt tttgaaaaca      1500
     tcttgggcct ctgttcaaaa tcgagggtta cgctcaaatt gaagcaacac agtaaaccag      1560
     tgttttgccc taaacgtccc gtagcatatg cgatgcagga tgctgtaaac agagagcttg      1620
     aaagattgga gaagctgcaa atcatcactc ctgtcgattt ttccgaatgg gctgctccga      1680
     tagtagtcgt tcgcaaggct aatggacaac ttcggatctg tggagactac tccacaggat      1740
     taaatgatgc actccatcct cacgactacc cacttcctgt gccacaggat atattcgcca      1800
     aactaggtaa atgtaccata ttcagtcaga tcgatctttc tgatgccttt ttgcaggtgg      1860
     agatagatga gtgcagtcgt tcactgctca ctatcaatac gcatcgaggt cttttccact      1920
     acaaccgact gcctccaggc ataaaagtag caccaggtgc atttcaacag ctgatggaca      1980
     gtatgttatg tggaattgac ggagttgcaa gctacatgga cgacatcatt atcggtggtc      2040
     gtagcaaaaa acaacatgat gaatgcttac aagcaacact tcaacgcatc caagactttg      2100
     gttttaccat tcgagtcgaa aagtgttctt tctacaagac gcaaataaga tatctcgggc      2160
     acattattga tggccaaggg ttacgtccag accctgccaa ggtggaaact atcagaaaac      2220
     ttccagctcc gacggacatt tccggagtaa gatccttcct tggtgccatc aattattatg      2280
     gcaaattcat agctaatatg cgaaccttac gctatccttt ggacaacatg ctgaaggatg      2340
     ggaatgtatt tcgatggaca actgagtgcc agcaaagttt cgaaaaattc aaatcaattc      2400
     tggaatcgga tttattgttg acgcactacg acccggagct agaaatcatc gtgtctgcag      2460
     acgcctcttc tgttggacta ggtgcgacga ttggtcacaa attccctgat ggcgcatatc      2520
     gagtcataca acacgcatca cgcgccttga cgaaagccga acaaaattat agccagattg      2580
     accgcgaagg tctcgccatt atttttgcgg tcaccaaatt tcataaaatg atttttggac      2640
     ggaaatttag gctccagaca gaccacaaac cactcctacg aatattcggc aataaaaagg      2700
     gcattccagt atacacggcc aatcgcctac agcgattcgc gctaacgctc ctgtcatacg      2760
     atttcaccat cgaatacgta cagacagaca agttcggaaa tgctgatata ttatcaaggc      2820
     tcatcgacaa acataacaaa ccggaagaag actacattat cgccagcatt aaccttgaaa      2880
     gagacgtaaa gtctatagca gttaatacag taatggcctt gccactcacc tttgataaaa      2940
     tcgagcaaga aacaaaggtt gacccattac tcaaaaaggt tagtcgctat atccagaacg      3000
     gatggcctga gaacaatgcc ttcagtggac agttagcatg tttttatgca agaaaagact      3060
     cactaaccaa agtgggtagc tgtattttgt tcggggaaag ggtagtaata ccagaatctc      3120
     tccatcaacg atgtttaaag caattccatc gcggacatcc agggatacag cgaatgaagg      3180
     cgatcgcgcg aagctacgtt tactggccat ctcttgacaa gcaaattgcg acatgtgtag      3240
     ccacatgcca agagtgtcag acggcagcaa agtcttctcc acatgcagaa cctttatcct      3300
     ggccaaaacc attagttcca tggcaaagag tacatgttga ctatgccgga cccgtcgaag      3360
     gggaatacta cctcgtggta gtagacgcat gtaccaaatg gccagagata atcaagacgc      3420
     acagcactac agctacacaa accatatcga ttcttcgtgg cttatttgcc agattcggat      3480
     gccctgtcac gttggtcact gacaatggaa cgcaatttgt tagtgaaagt tttaaatcat      3540
     tctgcgagtt aaatggtgta caacatctta cgacagcacc atttcacccc caatcaaatg      3600
     ggcaagcgga gcggttcgtg gacactttca agcgcgctat gaagaagatc cacaccacag      3660
     acatggcatt acaagagtca atggacattt tccttcagac ctatcgaaca acacccaatc      3720
     cacaattgga tcagaataaa agtccagcgg aagtaatgtt cggacgtgca atacgaacaa      3780
     cgaacgaact aatacgcccg aattcaacgc aaccgccaaa ggcaacactt ggtaaacacc      3840
     gttcgttcca gaaaggtgat tgtgtctacg taaaggtgta caccaaaaac aaatggagat      3900
     ggactgcagg tgttgttaca aaaaggtacg gaaatgtaat gtacggaaca aagttaatcg      3960
     agggacgtat catccgtagt cacgttaatc agatgcgtga tcgtgctgtt cgcaaccatt      4020
     cgactacgaa agaagtacca tcaattcctt tggatatact acttgaggaa tggcatgttt      4080
     cgccatcgtc gaatgcatca tattcggagt ctacagaagc agtaccgtcg tcgatctctc      4140
     cagttcgacc tatgccaacc tctccgaggc caatgacaac ttcatcatcc gagtacgaga      4200
     ctcctccagt gtcgccggta ccagtgtctg cattaccgcc gccttctcgt gttacagtgc      4260
     agcccaaacc agcgccacgt cgttccaacc ggaacagaaa tccacctaag tggatgagcg      4320
     cctaccgtcg atcttaaagg ggggagg                                          4347
//
ID   Gypsy-54_AnFu-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-192
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2866-2866 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 192 BP; 65 A; 31 C; 39 G; 57 T; 0 other;
     tgttgtgaca gcgaagaagt ttattatatg aaatgtcagt ttgacattgg ctgtcataac        60
     cagatccgga ttccgcagta gaagtgtgac acgcgtggcg tagaagatta gtggcgttaa       120
     taataaccct atcccattat cattgaattt ataatttgga ttaaacattt gaaataaacg       180
     caaaccataa ca                                                           192
//
ID   Gypsy-54_CQ-I repbase;    DNA;    INV; 4566 BP.
XX
AC   AAWU01036387;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_CQ_;
KW   Gypsy-54_CQ-LTR; Gypsy-54_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4566
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 487-487 (2011).
XX
DR   Genome; AAWU01036387; Positions    5447   10012.
XX
CC   Positions [3525-3989] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(99..2768,2772..4553)
FT                 /product="Gypsy-54_CQ-I_1p"
FT                 /translation="MDGDESMNGQVPPNGQLPPNGQLPPNGQLPPNGQLPP
FT                 NGQLPPNGQFGQQPHGFRPGADPYMQWFSQQQQVYVTEMFRQQQEVLQQQQ
FT                 AAMQQQQRAFMEQQEQLLRNVMTRINVQVPPNPEVILDSLANNIKEFRYDP
FT                 ENNVTFAAWYNRYDELFANDASRLDDPAKVRLLLRKLGMSEHERYTSYILP
FT                 KTAKFFSFADTVAKLTSLFGTAESVISRRYRCLQIMKQPLEDYVTYACRIN
FT                 KACVEFELPKLSEEQFKCLVFVCGLKSEKDAEIRTRLLCRIEERADITLEL
FT                 ISEECQRLLNIWHDAAMIEEQVAAVQALDSKPKFPRKQFKSGPAGDRAKSG
FT                 RSGPDTACWLCGGMHYARDCSFKAHECTDCGLVGHKEGYCRSAEKVRKKYV
FT                 STKVVKVNTCSVEDRRKYVPVVMNRTSVRLQLDTGSDITIISTGTWRSIGS
FT                 PPMSTTSVVAKTATGKPLEIDGEFWCEMVVGGRKSSGLVRVTSQPLNLLGS
FT                 DTIDSFGLWSVPLDTICHLVETSTTTTTNVDALKAEFPHLFSGELGLCVKT
FT                 KVKLELKPEKSPVFRPKRPVAYAMYQAVDEELDRLERCNIISPVDFSEWAA
FT                 PIVVVRKASGAVRICGDYSTGLNDALQPNQYPLPLPQDIFASLASCTVFSQ
FT                 IDLTDAYLQVEMDESSRAMLTVNTHRGLYQYNRLAPGVKPAPGAFQQVIDG
FT                 MLSGLVRTCGYLDDVVVGGLDEEDHKKNLRAVLQRIEEFGFTIRAEKCSFG
FT                 QPQIRYLGHLLDRQGLRPDPAKIEAIANLAVPTDVSGVRSFLGAINYYGKF
FT                 VANMRNLRYPLDELLKDGNKFRWTPECQQAFDRFKQILSSDLMLAHYDPTQ
FT                 EIIVSADASSVGLGATISHKYTDGSVKVVQHAARALSAEQGYSQPDREGLA
FT                 IIFAVTKFHKMIFGRSFRLQTDHAPLLRIFGSRKGIPVYTANRLQRYALTL
FT                 LLYDFTIEHVPTEKFGHADVLSRLISNHAKPDEDYVIASITLDNDLRSVVV
FT                 DVASALPLSFRVVERDTQVDPLLKKIYRYLRNGWPQKHTIVDSEILRFFAR
FT                 QDSLSTVDGCVLFGERLVIPERHRQRCLRQLHQGHPGISRMKAIARSYVYW
FT                 PSIDDDVEALVKACKHCASAARSPPHSAPVPWPRPTGPWKRVHVDFAGPME
FT                 GAYFLLIVDAYTKWPEVIKTNRITSVATIGMLRSVFARLGMPELLVSDNGT
FT                 QFTSAEFLEFCTTNGIQHLTTAPFHPQSNGQAERFVDTFKRAVKKIQAGRS
FT                 SIDEALDVFLMTYRTTPNRQVEGGVSPSEAMFGRRIRTNLELLLPPPPKPP
FT                 SESTELKGGSRKRRFEPHDLVYAKLYSGNKWHWAPGVVCDRVGQVMYTVWV
FT                 EDRRMLRSHANQLLSRADWDPRTDGAEKPKLPLDILLDSWNLSKPTPAADP
FT                 TTPTVLDASLQSASPDQRSSHGVPECSPSIPRSPEQVAPPESEPASLVPGL
FT                 RRSTRVRKKPQRFNSYQLN"
XX
SQ   Sequence 4566 BP; 1050 A; 1215 C; 1348 G; 953 T; 0 other;
     aaagtggcga ctcgggttag ttttggccta atctttacgg gtccaagacg acgcccacgc        60
     ggaaacgtag aagacttcgg gaaagttccg agagttcgat ggacggcgac gaatccatga       120
     acggccaggt tccgccgaac ggtcagttgc cgccgaacgg acagttgccg ccgaacggac       180
     agttgccgcc gaacggacag ttgccgccga acggacagtt gccgccgaac ggtcagttcg       240
     ggcagcaacc acatggattc cgacctgggg cagatccgta catgcagtgg ttctcgcagc       300
     agcagcaagt ctacgtgacg gagatgttcc gccagcagca ggaggttctc cagcagcaac       360
     aagcggccat gcagcagcaa cagcgagcgt tcatggagca gcaggagcag cttctacgga       420
     acgtcatgac gcggatcaat gtacaggtcc cgccgaaccc ggaggtcatt ctggactcgc       480
     ttgccaacaa catcaaggag ttcaggtatg atccggaaaa caacgtcacc ttcgcggcct       540
     ggtacaatcg ttatgacgag ctctttgcga acgacgctag ccggctggac gatccggcca       600
     aggtgcgctt gctgctcagg aagctgggga tgtcggaaca cgagcggtac acgagctaca       660
     tactgccgaa aacagctaag tttttctcgt tcgcggacac cgtggcaaag cttacgtcac       720
     tgttcggtac ggccgaatcg gtgatcagtc gacggtaccg ctgcttgcag atcatgaagc       780
     aacctttgga ggactatgtc acctatgcct gccgcatcaa caaagcttgc gttgaattcg       840
     aactgcccaa gctctcggag gagcagttca agtgtcttgt ttttgtgtgt ggtctgaagt       900
     cagagaaaga cgcagaaata agaacgcggt tgctgtgcag gatcgaggag cgagcagaca       960
     taacactgga gctgatttcg gaagaatgcc aacgccttct caacatttgg cacgacgcgg      1020
     cgatgatcga ggagcaggta gccgctgtgc aagcgttgga ttcgaagccg aagttcccga      1080
     ggaagcagtt caagtctggt ccagctggtg atcgcgcgaa gtccggtaga agtggtccag      1140
     acacggcctg ctggttgtgt ggtgggatgc actacgcaag ggactgctcg ttcaaggcgc      1200
     acgagtgcac cgactgtgga ctggttggcc acaaagaagg ctactgccgg agcgctgaga      1260
     aagtccggaa gaagtacgtc tcgacgaagg tggtgaaagt taacacgtgc agcgtggaag      1320
     atcgtcggaa gtacgtgcca gtcgtgatga atcgcacctc tgtgcggctg caactcgaca      1380
     ccgggtccga catcaccatc atctcaacgg gaacgtggcg cagcattgga agtccaccaa      1440
     tgtcaacaac ttccgtcgtg gcgaaaactg ctacgggcaa gcccttggag atcgacggtg      1500
     aattctggtg cgaaatggtg gtcgggggac gaaagtcttc tggtctggtt cgagtgacaa      1560
     gtcaaccact gaatttgctg ggctctgaca caattgacag ctttgggctg tggtcagtgc      1620
     cgcttgacac catctgtcat ctggttgaaa cgtcaacaac aacaacaaca aatgtcgatg      1680
     ctcttaaggc ggagtttcca catttgtttt ctggagagtt gggcttgtgc gtgaagacga      1740
     aggtgaaact tgagttgaag ccggaaaaat cacccgtttt tcggcccaag agaccggttg      1800
     cttacgcgat gtaccaagct gtggatgaag agttggaccg actcgagcgc tgcaacataa      1860
     tttctcctgt ggatttttcg gagtgggctg ctccgatcgt ggtggtacga aaggcaagcg      1920
     gggcagtacg aatctgtgga gactattcca cggggttgaa cgacgcgttg cagcccaacc      1980
     agtacccgtt gcctcttccc caggacattt ttgctagtct ggccagttgt accgtcttca      2040
     gtcagattga cttgaccgat gcgtacctgc aggtggagat ggacgagagc tcgcgtgcca      2100
     tgctcaccgt caacacgcac cggggactat accagtacaa ccgcctggca cctggagtaa      2160
     agccagcacc gggagctttc cagcaagtca tcgacgggat gctgtccggg ctcgtgagga      2220
     cttgtggtta tctcgacgac gtggttgtcg ggggtttgga cgaagaggac cacaagaaaa      2280
     acctacgggc ggtgctgcag cgcattgagg agtttggttt cacgattcgt gcggaaaaat      2340
     gttcgttcgg tcagccgcaa attcgctacc tgggccatct tcttgatcgc cagggattgc      2400
     ggccggatcc agccaagatc gaagcaatcg ccaatctcgc cgttccgacc gatgtcagtg      2460
     gagttcggtc atttctggga gccattaact actacggcaa gtttgtggcg aacatgcgca      2520
     atttgcggta tcccctcgac gagctgctga aggatgggaa caagtttcgg tggacgccgg      2580
     aatgccagca agcgttcgac cgattcaagc agattctcag ctccgacttg atgctggccc      2640
     actacgatcc gacgcaggag attattgtct cggccgacgc gtcatccgtt gggctaggcg      2700
     caaccatcag ccacaagtac accgacgggt cggtgaaagt cgttcagcat gcagctcggg      2760
     cgctgtcgta ggcggaacag gggtacagcc agccggacag agagggtcta gccatcattt      2820
     ttgccgttac caagttccac aagatgatct tcggtcgctc gttccggctc cagaccgatc      2880
     acgcgccgct gttgcggatc ttcgggtcgc gtaagggcat tcccgtgtat acggcgaacc      2940
     ggctgcagcg ttacgcgttg acccttttgc tgtacgattt caccatcgag cacgtcccga      3000
     ctgagaagtt cggtcacgcc gacgtgctgt cacggcttat cagcaaccac gccaaacccg      3060
     acgaggacta cgttattgct agcatcaccc tggacaacga tttgaggtca gtagtagttg      3120
     acgtagcaag tgcccttcct ctcagtttta gggttgtgga gcgtgacacg caagtcgacc      3180
     cgttgctgaa gaagatctac cgttacctgc gcaatggctg gccacagaag cacacgatcg      3240
     tcgactcgga aattttgcgc ttcttcgctc ggcaggactc gctgagcact gtggacgggt      3300
     gcgttttgtt tggagaaagg ctggtcatcc ctgaacggca ccggcagcgg tgtctgcgcc      3360
     agctgcacca aggacacccg gggatctcac gcatgaaggc catcgcccga agctatgtct      3420
     actggccttc gattgacgac gatgtggagg cacttgtgaa ggcgtgcaag cattgcgcat      3480
     cagcggcacg atcccctccg cactcagcac cagttccgtg gcctagaccg acgggaccct      3540
     ggaaacgtgt gcacgtggac ttcgctggtc cgatggaagg tgcgtacttt ttgctgattg      3600
     tagatgccta caccaaatgg ccggaggtga ttaagacgaa tcgcatcact tcggtagcaa      3660
     caatcggcat gctccgcagc gtttttgctc gtctgggtat gccagaactg ctggtcagcg      3720
     ataacgggac acagtttacg agcgctgagt tcctggagtt ctgtacaact aacggcatcc      3780
     agcaccttac gacggccccg tttcatccgc agtccaatgg ccaagcggag cggtttgtgg      3840
     atacgtttaa acgagcagtg aagaagattc aggcggggag gagctcaatc gacgaagcgc      3900
     tagacgtctt cctgatgacg tatcgaacta caccgaatcg tcaggtcgaa ggcggcgtgt      3960
     caccatctga agccatgttt ggacgccgca tccggacgaa tctggaactg ctcttgccac      4020
     caccaccaaa accaccaagc gagtcaacgg agttgaaagg tggttcccgg aagcgacggt      4080
     ttgaaccaca cgacctggtt tacgcgaagc tgtacagcgg aaacaagtgg cactgggcgc      4140
     ctggcgttgt ttgcgaccgg gttggccagg tgatgtatac cgtttgggtc gaggaccgcc      4200
     gtatgctccg atcgcacgca aatcagcttc tcagtcgtgc agattgggat ccgaggacag      4260
     atggagcaga gaagccgaag ttgcccctcg acatcctgct ggattcctgg aatctgtcga      4320
     aaccaacacc ggctgcggac ccaacaacac cgacggtctt ggacgcgtca ctacagtcag      4380
     caagtccgga tcaacgctcg tcacatggtg tcccagaatg ctcgccatcc ataccaagat      4440
     cacccgagca ggttgcacca cctgaaagcg agcctgcgtc gctggtaccg gggcttcgtc      4500
     gttctacacg agttcgaaag aagcctcagc ggttcaactc gtaccagctc aattgagaag      4560
     ggggga                                                                 4566
//
ID   Gypsy-54_CQ-LTR repbase;    DNA;    INV; 274 BP.
XX
AC   AAWU01036387;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_CQ_;
KW   Gypsy-54_CQ-I; Gypsy-54_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 488-488 (2011).
XX
DR   Genome; AAWU01036387; Positions    5173    5446.
XX
SQ   Sequence 274 BP; 62 A; 67 C; 64 G; 81 T; 0 other;
     tgttgggaca acctaatcag cgatggtccc caccagtccg cacgccgctg gactcgaact        60
     tggcgtctgg aacgcccagg tcacgacgtc accacagcgc atacgtagag gaggttccgg       120
     ttgtcaaatg gccattccgt gtttaattac ttacaagata acacgttgtt ttatttgttg       180
     gacataaagt cttattttgt ccttgctttt aatttgttta atgttaattg tctctcacgt       240
     acgacatcgg ccaccgggcg tacgtggtga taca                                   274
//
ID   Gypsy-54_DEl-I repbase;    DNA;    INV; 4155 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4155
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 496-496 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(137..457,375..686,653..1132,1540..2376,
FT                 2337..2564,2465..2677,2800..3015,2982..3182,
FT                 3208..3723,3648..4136)
FT                 /product="Gypsy-54_DEl-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="RSNEKTMPDNNQFNFETLLAQQQQFSQQLMQQQQQWM
FT                 ESILTQNRVVHNVDRSGEHSVCPPFPNFNKDQQNWETYLQQLTQHFAAYSV
FT                 QSAEKKKSVFSIVGRHARLHSTSPRTQCNPRRRKKAYFLSWVGTHAFELVK
FT                 NLFGSENLDQQTYAQITEKLSEHFKQKRHIVAARYEFFKRQMRDSQTHKEW
FT                 VADLRGIARECQFVCQSDGCYVSICLPIRRVLLNYVNEMIRDQIIVPLLST
FT                 QFAQPLCKSSPSLEDVLSIAETYEATTKTVAVIKESEKRALEMNAVYTHKQ
FT                 HQQKRNYVDGKGGKIVSKSCSGCKFREAICHKCXRKGHIAIVCLSKQCKDK
FT                 KRHRQSQKSKQKHGISANNLQCFQFGKVNSTRRAEAGIWKPIKFSNWASPI
FT                 VLAPKPGGALRICGDFKQGVNAQLDIEQYPLPTRESLLHQIRHGTHFSKID
FT                 LKDAYLQMELDEAAKEIMVVNTPGPAAFALWPIASAPPIFQGHLEQLLSGV
FT                 EGCGNYLDDIIISVPTVDQHLARLEQILCILQENGIKCKKEKCFFLRDEIE
FT                 YLGRRVSVKGILPDSSGLEKPLEGAEAPSNLQQLDAFMGKVNYYCNFIPNY
FT                 SQLASPLNQLRRKNIPFKFGPDQQQAFTALKRHILDATELAHFNEDLPLVL
FT                 PASTLQRGSSARSALMHLPSALGSFIHIHPDGKESHSICIKAYDTKFDTAK
FT                 LRRKPFQSFLGKEVSPVLVRAGNSFLHQVRYSQIEKEALSIIFGERSFTST
FT                 CTGRKFILITDHKPLVTIFNPSKHLSTMTSNRLQRWAIILMATILKESDSI
FT                 LKGVDHYVSSGWPEQLNDLEIMPYFNRRFALTINNNLLCLHSDVNRIIIPR
FT                 KLRTKILDPFTTVTGENSRPLHDGHWGIVRMKQIARQHVWWPGIDEDIAQL
FT                 TKSCSVCKIGNPAPVKEFQSRPKVNQPGKGYTFNVANMRRCLFSVSVYNKM
FT                 TSTTTANTISALTAIFAIEGYPKTLVSDNGPQLTAADFKDFCTQHGINHLT
FT                 IAPFHPASNGLAERFVQTFKTSVTKNIKDGYPVKTAVTKYLSSYRFTPNPE
FT                 GKSPAELLHGRPVRTILSQLFEKRTETQENQPTKYYPNQKVFAKNYARGER
FT                 NPREPADKVLPKPKSICQKLRKGRKVNKSCHRSVLGRVIFILRTSTGFIKR
FT                 HVNQIKPRSDSDDINSNSNVSDSPFWWMPDSQNPPTTMSSPRHEKEQPCNP
FT                 PQPLPSAPGSSEVAAASRQDNHQAPQTRDRAFQSEAVLDHAKKSTAISPQI
FT                 LESVKPTNNM"
XX
SQ   Sequence 4155 BP; 1363 A; 953 C; 837 G; 999 T; 3 other;
     ttttctggcg acgaggaaaa aagtcaaaaa agttcgtgtc ggtagtctaa atcgtagaca        60
     tcgaacggaa agtgaagaaa aacagtgccg caaaatttag ttttgtgtat ttcgtgttgg       120
     tagtctaaac ttgtagagat cgaacgaaaa aacaatgcct gataacaatc agttcaactt       180
     tgaaacattg ttggctcaac agcaacaatt ctcgcagcag cttatgcaac aacaacagca       240
     atggatggag tccatattaa cacaaaaccg tgtcgttcac aacgtagaca gatcagggga       300
     acattcagta tgtccgccgt ttccaaattt caacaaggat caacaaaatt gggaaacgta       360
     tctccagcaa ttaacacagc acttcgccgc gtactcagtg caatccgcgg agaagaaaaa       420
     aagcgtattt tctatcgtgg gtaggcacgc acgcctttga acttgtcaaa aatctgttcg       480
     gtagcgaaaa tttggatcag cagacctatg cgcaaataac ggagaagcta tcagagcact       540
     tcaagcagaa acggcatatt gttgctgctc ggtatgaatt ttttaaacgt cagatgcggg       600
     actctcaaac acacaaggaa tgggtcgccg atctacgtgg cattgctcgt gagtgtcaat       660
     ttgtttgcca atcagacggg tgttattaaa ttacgttaat gaaatgatcc gcgatcaaat       720
     aattgtccca ctmctttcga cgcaattcgc acagccgctt tgcaaaagct caccgtcact       780
     cgaggacgtt ctctctattg ccgaaacgta cgaagcaacc acgaaaaccg tagcagtgat       840
     caaggagagc gagaagagag cgcttgagat gaacgcagta tacacacaca agcaacacca       900
     acagaaacgc aactatgttg atggaaaggg aggcaagata gtgtcaaaat cttgctccgg       960
     ttgcaaattt cgcgaggcca tctgtcacaa atgtkctaga aagggacaca tagctatcgt      1020
     ttgcctgtcc aaacagtgca aagacaaaaa aagacaccga caaagtcaaa aatcaaaaca      1080
     aaaacacgga atcagtgcaa acaatttaca atgtttccag tttggtaaag tttgaaggaa      1140
     acaaaaaatg tgattgatgt ggagctttca atacaagcgt ttctttccaa atggattctg      1200
     gtgcaackgt gtcggtgctt aattcaaaaa catacaaaca acttaacagc ccgaaactag      1260
     agaagtgcga tcgaatttta catgcatttg gccaacaaca aattccgttg ttgtgtggca      1320
     aaaaactggc aatcatttgg cagacgtgaa aattcaaaca acctgttcgg tttaatttgt      1380
     ttaaaacatt caatttcgaa attcagcaaa tcgcaaatgt gagtgagaag cagggtactc      1440
     aaatgaccaa tctttgtaag aagtacaaga agtatttagc cggcgattgg aaaataaaaa      1500
     ctttaaggca agcatttatc taaacgaact ccgttctaaa attctacaag gcgcgcagaa      1560
     gcaggtattt ggaaacctat taaatttagc aactgggcat cgcctatagt actagcaccc      1620
     aagccgggtg gagcactacg aatctgcggc gatttcaaac aaggtgtcaa tgcccaattg      1680
     gacatcgagc aatatccact gccaacacgt gagtctttgt tacaccagat ccgccatggc      1740
     acgcattttt ccaaaattga cctgaaagac gcttatttac aaatggagtt agacgaagca      1800
     gcaaaagaaa ttatggtcgt caacacgccg ggccccgccg cgtttgcctt atggccaata      1860
     gccagcgccc cacctatatt ccagggtcat cttgagcaac ttctaagtgg tgtagaaggt      1920
     tgtggaaatt atctcgacga cataattatt tcagttccaa cagtagatca acatcttgct      1980
     agactcgaac aaattttatg cattttacag gaaaatggca taaaatgtaa gaaagagaaa      2040
     tgtttctttc taagggacga gattgagtat cttgggagaa gagtcagtgt caagggcatc      2100
     cttccggact catcgggact ggagaagccg ctcgaaggag ctgaggcgcc ctccaatcta      2160
     cagcagttag atgcgttcat gggaaaagtc aactattact gcaatttcat tccaaattac      2220
     tcccagttag cttcaccttt aaatcaactt cgtagaaaga acattccatt caagtttggc      2280
     cctgaccaac agcaggcttt cacagcatta aaacgacata ttctggacgc tactgagcta      2340
     gcacacttca acgaggatct tccgctcgtt ctgccctgat gcatcttcct tcggcattgg      2400
     gtagttttat acacattcat ccagatggca aggaaagcca tagcatttgc atcaaagcct      2460
     atgacaccaa gttcgataca gccaaattga gaaggaagcc ctttcaatca tttttgggga      2520
     aagaagtttc accagtactt gtacgggcag gaaattcatt cttataactg atcacaagcc      2580
     gttggtcaca atcttcaatc caagcaagca tttgtcgacg atgacttcca acagacttca      2640
     gcgctgggct ataatattga tggccacaat tttgaaataa gtatcgctca actacagctc      2700
     atggaaatgc agacgcactc cacgtcttcc gattacttca gatttcaact ttgataacgg      2760
     agggcatccg cccaattcag acgaaataaa tcaaaatagg aaagcgacag tattttgaaa      2820
     ggggtcgatc actacgtatc aagtggatgg ccagaacaac taaacgatct cgaaataatg      2880
     ccatacttta atcgtagatt tgctttaaca attaacaaca acctactatg tcttcattct      2940
     gacgtcaata gaattattat tcctcgcaag ctacgaacta aaattctcga ccccttcacg      3000
     acggtcactg gggaatagtt cgcatgaaac aaatagcacg acaacatgtt tggtggccag      3060
     gtatcgacga agatatcgca caattgacca agagttgcag cgtttgcaag attggcaatc      3120
     cagccccagt taaagaattt caaagccggc caaaagttaa tcagcctggg aagggataca      3180
     catagacttt gcaggtccca tatttgattc aatgtggcta atatgcgtcg atgcttattc      3240
     tcagtttccg tttataacaa aatgacatcg accacaactg caaacaccat atcagcactt      3300
     acagctatat ttgccatcga aggttatccc aaaactttag tcagcgataa cggaccgcaa      3360
     cttacagcag ctgattttaa ggatttctgc actcagcatg gaattaacca ccttactata      3420
     gccccattcc atccagcatc aaatggactt gctgagcgtt ttgtacaaac ttttaaaacc      3480
     tcagtcacca aaaacatcaa ggatgggtac ccagtcaaaa cagcggttac aaaatacctc      3540
     agttcatatc gttttacacc taacccagaa ggcaaatcac ctgcagaact tctacatggt      3600
     cgtccagtgc gtacgatctt aagtcaactc ttcgaaaaac gaactgaaac ccaagagaac      3660
     cagccgacaa agtattaccc aaaccaaaaa gtatttgcca aaaattacgc aaggggagaa      3720
     aggtgaataa aagctgtcat cgatcggtcc tcggccgtgt aatatttatt cttcgaacat      3780
     ccacaggttt catcaagcgc cacgttaacc agatcaaacc aagatccgat tcagacgaca      3840
     tcaacagcaa ctccaacgtt agcgacagcc cgttttggtg gatgcctgac tctcaaaatc      3900
     cgccaacaac aatgtcaagc cctagacatg aaaaagagca accgtgtaat ccaccacagc      3960
     cacttccatc cgcccctggt tccagtgaag tagctgcagc atcccggcaa gataaccacc      4020
     aagcgccaca gacacgcgat cgagcattcc aatcagaagc agtactcgac cacgccaaga      4080
     agtcaaccgc tatcagcccc cagattttag aaagcgtaaa acctactaac aatatgtaat      4140
     tttagggggg agatg                                                       4155
//
ID   Gypsy-54_DEl-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-233
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 497-497 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 233 BP; 78 A; 52 C; 31 G; 72 T; 0 other;
     tgatatgtat cgtaaattca aaagaatatt gcatcattct tcttaaaagt tatttcctgg        60
     tatcagccct tcttatgaaa actctgttcc tattgcatca gcttataaca tgtacacgca       120
     caatactaac acactcaaaa catgtataaa agactgcgaa gggagccgaa taaaatcact       180
     tgcatatttg acctcaaccc gatcgtgtct tcttatttct tcggaacaca aca              233
//
ID   Gypsy-54_DWil-I repbase;    DNA;    INV; 5683 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_DWil_;
KW   Gypsy-54_DWil-LTR; Gypsy-54_DWil-I.
XX
NM   Gypsy-54_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5683
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1877-1877 (2012).
XX
RN   [3]
RP   1-5683
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           768..2291
FT                 /product="Gypsy-54_DWil-I_1p"
FT                 /translation="MSVRHSHESIARALQENDPFCGICHETLNENEAIASS
FT                 PCKHRFHNKCITECLKTSNLCPTCKHPCKMKQLVRSNIDLETELQEASKSG
FT                 EPTTQPVTPHNTRSGPGRPAKTKPIRNQGAIQRKGIGTRSSTTSRQHRPPP
FT                 TQASSPRPSTPPDYTTLIQTAIQAQQEQLVNHLALLIDDKLASIRLERKEP
FT                 NPISERSAAFSLPAPRQEEHYNHTQTSRNLSSQTQNSNRGSRANSTLSPEK
FT                 VASIMQSWRIKFDGSKEGMHSEDFLYRVRSLAEQNLNEDYQVLCDHLYLLF
FT                 AGKANDWFWKFHRAHPNFDWNKFCVEFRKKFDEVDNDMDTWELINSRHQGE
FT                 NETFEDYQFSVERLVGRLNTQLSEDSLVKLLIRHSKSAIRYELMHLGIFTL
FT                 SHLRQEVRTHEQFAKQMKSIPTKNTFGHRSKIAELDSNFENYMQEEVEAFQ
FT                 HKLTCWNCRKPGHRFDICLEPRTVFCYGCGAVNVFKPRCRNCNPQENRPTD
FT                 AAINTSLSHPXQ"
FT   CDS           2294..5614
FT                 /product="Gypsy-54_DWil-I_2p"
FT                 /translation="MKDKYSQTEECEPLVCRKETDSQGNVGPTSKTVDKSP
FT                 FRPLHLRLAQYETVRHRIFGEVDSIRPMIKSKRSTHRLRFFWKKVRNNRKK
FT                 LISSIFSRSDNRLYTEIKIEGQTFTALLDCGANISCLGSKVAKEFLKHPKT
FT                 RNCSGKIITANNSECFVKGKLTSDITYRQLTKPLDFFIIPDLKQDIYLGID
FT                 FWRKFGLIDKLKEDPLIVSDIIEEKGNDHGDSVKMHRLSESQQQKLNFAIA
FT                 KLPCYDKEGLGRTHLIDHKIEVDSTRPIKQRHWPISPAIEKLMFTEIDRML
FT                 DLDIIEECNSPWSSNCVLVRRGDKVRLCLDSRAVNQCTRKDAYPLPHIDGI
FT                 LSRLPPARFITGLDMKHAFWQIPLEESSRQYTAFTIPNRPLYQYKVMPFGL
FT                 CNAPQTLCRLMDRVIPSYLRTRVFVYLDDLLILSEDFESHIALIQEVALRL
FT                 RKANLTINVAKSKFCMQEIKYLGFIIGYGQVKTDPGKICAINDFPIPTTVK
FT                 QLRRFLGLTGWYRRFIENYATISXPLTELLKKNRSLSWNEEADYAFSELKR
FT                 RLTSAPILTTPDFKKPFILLCDASLVGIGCMLAQTNSEGIELPIAYMSEKL
FT                 NKAQRNYTISELECLAVIKGIKKFRAYIEGQTFVVVTDHASLKWLMKQKDL
FT                 SGRLARWAINLQAFSFEIVHRPGSQNIVADSLSRRDEVSELSEIKPMIDLS
FT                 SKYFESDEYRELAKRITDNQSRLPDLRVDSKYVYKRTEHASGNEAQENDSW
FT                 KLWIPSSLTEDIIKTAHNPPNSAHCGIGKTSDKIRRYFFWPNMASQIKKYI
FT                 DSCSTCRSTKSGNKILRPPMGKPMTSDRPFQKLYMDLLGPYPRSKQGHIGL
FT                 LIIVDHNTKFHFLHPLKKFTSNRICEYLENCIFYTFGVPECILTDNGSQFK
FT                 SGFFKSFLTRFGVSHQCTAIYSPQANASERLNRSVLAAIRAYIGTDHTTWD
FT                 NHLTEISAAFRSSIHRSTGYSPYYLCFGQHMLHNGKDYELLRKLNLMTEDT
FT                 SLHRFDALQVARQKAKDNIAKAHATNARNYNLRSRSRQLKVGDTVHARNFT
FT                 QSSAPKRFSSKLAPVFIPAKVLRKVSSSYYELANEQNKSLGVYHLKDIST"
XX
SQ   Sequence 5683 BP; 1852 A; 1125 C; 1129 G; 1574 T; 3 other;
     gaaatggcgc ccaaccgtgg gacccgaatt ctaaattatt cattactaca gaaatgccaa        60
     ccgtgggact cgaataattt agaacaacac tacagtaatg gagcccaatc ataaggcccg       120
     aataaaacgt aggacaaccc cactactaat cggatatgta caccaccaaa gtatccacac       180
     acatgttatt gctcattatc atccattcat attcagttat ttagattaat tttattttca       240
     agctagttat gcagactcgt aatgcgatgg tgcccgttgt agattgcttg tgtgaatcgc       300
     gatagtaatt cgggaatttc cggattagtc gaccagaaga aactattggc ggcaacagca       360
     tcgtaggacg tatctttgta tgactaggcg ggaacgcaaa ttttatgatc tttgtagttt       420
     gaggctatcg ttaggaattg cagttgcaac tcggttatat cgggttgact gaccaatgga       480
     gtcgttgaaa agttacaata ttataaaata ggcattctta gaccttaaat ttgtttagag       540
     tgaaaagaac ctggaccagg aatagcatat gactggcgta tgtcggtata tgaccagttt       600
     aggaaatcgt cattcagaca aatcggcaat aggaattttt gtttaagatt taatagaaat       660
     ctattttttg tgcagatcga atcaactttg taaacggcaa taggattgga taatgatggc       720
     ggattccaaa tttatataat ttaaattaat taaagaaaaa tttaagtatg tctgttagac       780
     acagtcacga gagcattgcg cgagctttgc aagaaaatga cccattttgc ggcatttgcc       840
     atgaaacttt aaatgaaaac gaagcaattg cttcgtcgcc ttgtaagcac agatttcaca       900
     ataagtgtat tacagagtgt ttaaaaactt cgaatttatg ccccacttgc aagcatcctt       960
     gcaagatgaa acaacttgta agatcaaata ttgacttgga aacggaactc caagaagcta      1020
     gtaaatcagg cgagcccaca actcagcctg tgacccctca taatactcgt tcaggacctg      1080
     gtcgacctgc caagaccaaa cctattcgta atcagggagc aattcaaaga aaagggatcg      1140
     gcacgagatc ttcgaccacc tcacgtcaac ataggccacc gcctactcaa gctagtagtc      1200
     caagaccaag tacccctcca gattatacaa ctttgataca aactgctatc caagcacaac      1260
     aggaacagtt agtaaaccat ttagctttgc tgattgacga caagttagct tctattcgac      1320
     ttgagcgcaa agaaccaaac cccatttcag aacgttctgc agcgttcagc ctcccggcac      1380
     caagacaaga ggaacactat aaccacacgc aaacatctag aaatcttagt agtcagactc      1440
     agaactcaaa tagagggtcg cgagcaaatt cgacattgtc acccgaaaaa gtagcaagca      1500
     ttatgcaaag ttggcgaata aaatttgatg gttccaaaga aggaatgcat tcggaggatt      1560
     tcctatacag agttcgttca ttagcagaac aaaatttaaa tgaagattat caagtacttt      1620
     gtgatcattt gtatttactg ttcgcaggta aagcgaatga ttggttttgg aaatttcatc      1680
     gagcacaccc aaatttcgat tggaataaat tttgcgtaga atttagaaag aagtttgatg      1740
     aagtagataa cgatatggac acctgggaac tgattaatag cagacaccag ggcgagaatg      1800
     aaacctttga ggattaccag tttagtgtcg aaaggctagt aggaagatta aacacacaac      1860
     tttcagagga ttctttagtc aagttattaa ttagacattc aaagtcggca attcgttatg      1920
     aacttatgca tctaggaatt tttaccttat ctcatctgag acaggaagta cgcacccacg      1980
     agcaatttgc taaacaaatg aagagcatac cgaccaagaa tacttttgga catcgttcaa      2040
     agatagctga attagactct aatttcgaga attatatgca ggaggaggtg gaagcttttc      2100
     aacataaact tacatgttgg aactgccgga agcctggaca ccgttttgat atctgtctgg      2160
     aaccgcgtac tgtattttgc tatggttgcg gagccgtaaa tgtttttaaa ccgcgttgtc      2220
     gtaattgcaa cccgcaggaa aaccgaccga cggatgcggc gatcaacact tckttgtcgc      2280
     atccasacca ataatgaagg ataaatattc ccaaacagag gaatgtgaac ctcttgtttg      2340
     taggaaagaa acagattcac aaggaaatgt aggaccaact tcgaaaacag ttgataaaag      2400
     cccatttcgt cctcttcacc tacgtttggc tcagtatgag accgttcgtc atcgcatctt      2460
     tggtgaagta gacagcatac gaccaatgat taagtctaag cgctctacgc atagactacg      2520
     cttcttttgg aagaaggtta gaaataaccg caagaaattg atttccagta tattttcccg      2580
     atcagataat cgattgtaca cagaaataaa gatagaaggc cagaccttca ctgctctttt      2640
     agactgtggc gctaatatta gttgcttagg aagtaaggta gctaaagagt ttttaaagca      2700
     tcctaaaaca cgcaattgtt caggcaaaat aattacggcc aacaattctg aatgttttgt      2760
     taaaggtaaa ttgacaagtg acattacgta tcgacaactt accaaacccc ttgatttctt      2820
     tattattcct gatttaaaac aagacatata tcttggaata gatttttggc gtaaatttgg      2880
     tttaatagat aaattgaagg aagacccact aatagtatcg gatattattg aagaaaaagg      2940
     aaatgatcat ggagattccg tgaaaatgca ccgtttgtct gagtctcagc agcaaaaact      3000
     taattttgca attgctaaat taccctgcta cgataaagaa ggattaggtc gcacacatct      3060
     cattgatcat aagattgaag ttgatagtac taggcccatt aaacaaaggc attggccaat      3120
     ttcgccggcc attgagaagt taatgttcac ggaaatagat agaatgttag atttagatat      3180
     cattgaagaa tgtaacagtc catggagctc caattgtgta ttggtgagac gtggcgataa      3240
     agttcgatta tgtttagatt ctagagcagt gaatcagtgc actcgtaagg acgcgtatcc      3300
     tcttccccat attgatggaa tacttagcag gctgccacct gctcgattta ttactggact      3360
     ggacatgaag cacgccttct ggcaaattcc gttagaggaa agctcacgtc aatacaccgc      3420
     cttcacaata cctaaccggc cactttacca atataaagtg atgccttttg gtttgtgcaa      3480
     cgccccacag actttatgta gacttatgga tcgtgtcata ccgtcttatt tgcgcacaag      3540
     agtattcgtt tacctcgatg acctgttaat tctttccgaa gattttgaat cgcatattgc      3600
     tttaatacaa gaggtagcat tgagactgcg taaagcgaat cttacgatta atgtagctaa      3660
     atctaagttc tgcatgcagg agattaaata cctcggcttt attattggat acggacaagt      3720
     gaaaaccgat cctggaaaaa tttgtgcaat aaacgacttt ccgattccaa caacagtcaa      3780
     acaattaagg agatttttgg gactgactgg ctggtatcga cgttttattg aaaattatgc      3840
     caccattagc tktccattaa cagaactctt aaaaaagaac cgatctctta gttggaacga      3900
     agaggcagac tacgctttct cagaactgaa acgaagatta acttcagcac ctattttgac      3960
     cactcccgat tttaagaaac cgtttatttt attgtgtgat gcaagtttag taggtatagg      4020
     atgtatgtta gctcaaacta attccgaagg catagaacta ccgatagctt acatgtcaga      4080
     aaaactgaac aaagctcaaa gaaactatac gatatcagaa ctcgaatgtt tggcagtaat      4140
     taaaggaatt aagaaattta gagcatacat tgagggacaa acttttgtag tagttaccga      4200
     tcacgcttct ctaaaatggc ttatgaaaca gaaagacctt tccggtagat tagcgagatg      4260
     ggcaattaac ttacaagctt tctcatttga aatcgttcat cgtcctggtt ctcaaaacat      4320
     tgtagcggac tcattatcgc gacgggatga agtttcagaa ctttcggaaa taaaacctat      4380
     gatagatttg tcgtctaaat attttgaatc agatgaatat cgtgaactgg caaaacgcat      4440
     tacagacaac cagtccagat tgcctgattt gcgcgtagac agcaaatatg tttataagcg      4500
     aacagagcac gcaagcggaa atgaagcgca ggaaaacgat tcttggaaat tatggatccc      4560
     atccagtctt accgaagaca taataaagac agcacataat cccccgaact cagcacattg      4620
     tggcattggc aaaactagtg ataagattag gagatacttc ttttggccca acatggcatc      4680
     ccaaataaaa aaatatattg acagttgttc gacttgtcgg tctacaaaaa gcggcaacaa      4740
     gattcttcga cctcccatgg gaaagcccat gacatccgat agaccgtttc aaaagcttta      4800
     catggactta ttaggtccgt atcctagatc aaagcaaggg cacattggat tattgatcat      4860
     cgtcgatcac aacaccaaat ttcattttct ccatccgctt aagaagttta catccaatcg      4920
     tatttgcgaa tatttagaaa attgtatatt ttatacattt ggcgtaccgg aatgtatact      4980
     gacggacaat ggttcacaat tcaaatccgg attctttaag tcatttctta ctcgattcgg      5040
     agtctcgcat caatgcaccg ctatttattc ccctcaggcg aacgcaagtg aacgtcttaa      5100
     ccgctcagtt ctagcagcaa ttcgcgcata catagggacc gaccatacca cttgggataa      5160
     tcatcttaca gaaattagtg cagcctttcg ttcttctatc caccgcagta ctggatattc      5220
     cccctactat ctatgttttg gtcaacacat gcttcataat ggtaaagact atgaactttt      5280
     gcggaaattg aatttaatga ctgaagacac ctcgttgcat agattcgatg cattgcaggt      5340
     agctcggcaa aaagctaagg ataacatagc caaggcacat gcaacaaatg ctcgtaatta      5400
     caatttacgt agcagaagca gacaactaaa agtcggtgac acagttcatg ctcgaaattt      5460
     tacacagagt tcagccccaa aaagatttag tagcaaatta gcaccagtct tcatcccagc      5520
     taaggtgttg aggaaggtca gttcgtcgta ttatgaatta gctaacgagc agaataaatc      5580
     tctcggtgta tatcatttga aagacataag cacctaaatt agctaaagag gtcctttttc      5640
     agttcatgac tccgtcagta ggcttccgta gcattaactg tgg                        5683
//
ID   Gypsy-54_DWil-LTR repbase;    DNA;    INV; 1933 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_DWil_;
KW   Gypsy-54_DWil-LTR; Gypsy-54_DWil-I.
XX
NM   Gypsy-54_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1933
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1878-1878 (2012).
XX
RN   [3]
RP   1-1933
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 1933 BP; 596 A; 360 C; 324 G; 653 T; 0 other;
     tgtagtagcc ctctttaata ataataattt taattccatt tcgaaaaaaa ataatatttt        60
     ttttgtttgt ttgcaagaat aaatgaataa ccccccttgc gtactacgca catgtcttca       120
     cttggtacgg ttcttactct catttcggac agcgaacgca aagcgtaagc aaagaagaga       180
     gcatggaaaa gatccgttag aattcgttcg catgcattgc gtttgcttag aaacagaatt       240
     tttggtacag gctttttcat ttaatttgat acttggattg cgaaaagacg tggatactaa       300
     tattcacata aatatatata tatacatata tatttgtgaa acacgtgcat attacatcat       360
     cgttaaaaag tacagtgact gcacaaggca gtaatataca tatttggcta aagtgaataa       420
     aaatattagt gaatattcga agaataaggt gatataaaat caatttagtg aaaatattag       480
     aatttaaacc ccgttatatt tcagttaaaa tttatatttc ggtcgcgtgg cgtcgaccaa       540
     gcaacttttg gctttcaagc agccttggat ttttcatttt ctttgggaca atttggttga       600
     ttgtacccca gcccaatcgc tgatattttc ttcgttggaa caaaaagaga catctttcaa       660
     taaccaagac accagcgagc ctcggattta ttttatcaac ccttccattt catcaataac       720
     catcgccatg ggccaggcta aaatagtctg gtgatgaaat gacgcaattc cccggctaat       780
     accaacatta tacacccaat ttgagcgaga tctactactt ttctatttct ttttggtgca       840
     catgcatact tagtagtagt tctgctacct tttcttgttt cgtctgttcg caaagtatgg       900
     cgtagcagcc ctttggtttg gatactactt tttttttgtt gcaccacgac aacacctttt       960
     aatacttttt ttttcttctt ttattaacgt aaattttgct gatctaaaag aaaattcaaa      1020
     tgaattatta gtttaagtaa cgtaacgaaa ctttaaatat tattaagatt aagtccctat      1080
     ttggttaagt aaaatacgtt ttccttagta ggaaacctaa tgggtatgta atgcgttgag      1140
     attggctttg ttgcatttca tttttctaat aactaaataa tacagcaaat ccctgcagca      1200
     tcgatgggcc cagagatcgc accgttggat aaatcgtgag ttaacacaca catgtatata      1260
     catatataaa tatttgtttc attgccaact ggcacacgcg gccacataac ctaaatctct      1320
     tttgaattac tatgaatttt tgaatctata tttgctctaa ttatcgtatt taaatttatt      1380
     ttgctatatc tttttacata tctttatttt gtaatttctt agaatataaa gtcatgaaaa      1440
     cccttttgtt tggaattaaa cccgtaactt gaaatttcgt catgttggtg taaactaatt      1500
     cattgaggag tccgtcgcct gaatccatga ctatgctgcc gttacaaatc gtctaagatc      1560
     atttaagagt ctgttaaggg gcaatcaatt aaacccaata gtttgccaag gtagggtggg      1620
     tacagaaagg gttaacgaac aacaccttaa gctaatctgc agagaagtcg tccgcacaat      1680
     taatagtatc ccaatctggt ccagtatttt gctttttaca tccttttagt ttctgatagt      1740
     gcacttatat tttttctgta tgatccgtgc gtatgcctag agtaggaaag aaccccccct      1800
     catccgacga gctaagcaag agcaacgcta gaagtgcacg accccgatct ttagcataca      1860
     cttgtgtcat cgttagcaac gtagaaaaat taggcagcta acaactacac gtgcacatgt      1920
     attcatcact aca                                                         1933
//
ID   Gypsy-54_LMi-I repbase;    DNA;    INV; 5056 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5056
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(312..1088,923..2413,2397..2669,2648..3592)
FT                 /product="Gypsy-54_LMi-I_1p"
FT                 /translation="MWFSQVEAVFVSNNITCDLAKFGHVVSQLDQNYAAEV
FT                 RDIITAPPTQSSYRRLKEELIRRISSSESEEQRVQQLLRQEECGDRRPSQF
FT                 LRHLRSLAQSDMVPDSLLRAIWVRSLPAQVQAVIAVQNDMHLDAVADLADR
FT                 VHDALATAPSTVAAVDAVRNARPATSAAGADLHQVVQNLATQVAALSAQFE
FT                 RLAHSQPDGSRRRSHSRPRSRRRSRSRPGSPVTSEQPPTGFCWYHARFGKN
FT                 AKKCCSPCXYPNASCNRTPQQTSLQTTQQKPPWQPGDVRAAADRLLLVPRA
FT                 LRQEREEVLLSLXIPKRQLQPDLGAPGCSAISRRLFVTERNGNVRYLVDTG
FT                 SDLSIFPRSLLRGRRKVETLSLTAANNSAIKTYGLHHRNLDLGLRRIFSWT
FT                 FIVADVNEPILGADFLGHYKLLPDIANVQLIDSTTSLKIVGQQRHANLFSV
FT                 KPVXLPGPYMDILDQFPELTRPPGAPRDVKHSTVHHIITTPGPPISCRPRR
FT                 LAPDRLAAAKAEFEAMLQQGIIRPSSSPWSSPLHLVAKKDNSWRPCGDYRA
FT                 LNARTVPDRYPVPHLHDFSHALAGSVLFSKIDCAKAYTQIPVAPEDIPKTA
FT                 IITPFGLFESLYMTFGLCNAAQTWQRFLDGVLRGLPCCFAYLDDVLVFSKS
FT                 PELHRRHLTAVFQRLSEAGIVINSSKCIFGVTEIEFLGHLITPSGSTPILD
FT                 KVQAILNMPRPXTFKELRRYLGTINFYRRHLPNAAAVLEPLNAALRGPKVK
FT                 GGDSHKGGTPIDWTEEMETSFLQSKWSLAEAALLAHPVHDAELAIVVDASQ
FT                 TAVGAALQQHIDGSWQPLGFFSKKLSTSQHTWSAYDHEFLRYTRRVLAVYK
FT                 AVKYFRPSMEARPFVIFTDHKPLTHAFRCNNTKCSPCQFRQLEFVSQFSTD
FT                 IRHISGIDNIVADCLSRACAAITPPVDFXDVAKEQESDEQLRDLRKDTSSG
FT                 LKLELVPIPGSNRKIWCDVSTGSHRPFLPEKFRRSAFDCMHGLSHPGINTT
FT                 VTLVAARFVWPGLQKDCRQWARTCTACQRTKVRRHTRAPVGTFPDATRRSP
FT                 TSTWTSSGHCLCPKASTTCSPWWTTSHAGRRQRPSRTSPPRPSLPPSSTRG
FT                 WHASAVPATSRLTVATSSTAHCSDTLPDCVVHSSTKLRATTRRPTAWSRDS
FT                 TGX"
XX
SQ   Sequence 5056 BP; 1128 A; 1623 C; 1285 G; 1010 T; 10 other;
     ctggtgaccc cgacgtgata caggcgacaa cacgtggtgg cgaactattc gtgtgtgacg        60
     cggattctga tcaagatgag caccttggag gagctgaaga agtcgatcga cagccgacag       120
     aaggccatcg acgagctgat ggagcggaac aagaggctgg agagcgagct gcaaaccctc       180
     tccgcccgcc aggagtcagc taccgagaat ctccgcgcac aagatggtac tgcgccgcca       240
     ccttccgctg ttacggcatc acgggacgag tattggtcaa gctgccgcct ttttggcccc       300
     gggaccctgt catgtggttc agccaagtgg aggccgtctt cgtcagtaac aacattacat       360
     gcgacctcgc aaaattcggc cacgtcgtga gccagctaga ccagaattac gcggccgaag       420
     tgcgggatat cataaccgcc ccgccgacgc agtcctccta ccgacggctg aaggaagaac       480
     tgatacgtcg gatttcktca tccgagtccg aggagcagcg agtgcaacaa ctacttcgtc       540
     aagaagaatg tggcgaccgg cgaccttcgc agttcctgcg ccacctgagg agcctcgcgc       600
     agtcggacat ggtaccagat tccctcctgc gcgctatctg ggtacgcagt ctccccgccc       660
     aggtgcaagc ggtgatagcc gtgcagaacg acatgcacct ggacgccgta gcggacctgg       720
     cagatcgggt acacgatgcg ctagccacgg cgcccagtac tgtggcagcc gtcgacgccg       780
     tccgaaacgc gcgccctgca accagcgcgg ccggtgccga ccttcaccaa gtagtacaga       840
     acttggccac ccaggtggca gcactaagcg cgcagttcga gcgcttagct cactcgcagc       900
     cagatggcag caggcgacgt agccacagca gacctcgctc cagacgacgc agcagaagcc       960
     gccctggcag cccggtgacg tcagagcagc cgccgaccgg cttctgttgg taccacgcgc      1020
     gcttcggcaa gaacgcgaag aagtgttgct ctccctgtgm atacccaaac gccagctgca      1080
     accggaccta ggcgcacccg gctgcagtgc aatatccagg cgtctcttcg taacagaacg      1140
     gaatggaaat gttaggtatc ttgttgacac gggmtccgac ctgtcaatat tcccccgttc      1200
     tctactgaga ggccgcagaa aggtcgagac actgtccctc accgcagcaa acaattcggc      1260
     gataaaaacc tatggcttac atcaccgaaa tttggactta ggactgcgac gcatattttc      1320
     gtggaccttc atagtggcag atgtaaatga gccgatcctg ggtgcagatt ttctcgggca      1380
     ttacaagttg ttacccgata tcgcaaacgt ccagttgata gactcaacaa caagcctaaa      1440
     gatagtggga cagcagcgcc acgccaatct cttcagtgtt aaaccagtgm agttacccgg      1500
     accgtacatg gacattctgg accaatttcc agaactcact cgtccgcctg gtgcaccgag      1560
     agacgttaaa cattcgacag tgcaccacat tattaccacc cctggtcctc ccatttcgtg      1620
     ccgtccacgc cgtctcgctc cggacagact cgctgcagca aaggctgagt tcgaagccat      1680
     gctgcagcag ggcatcattc gtccgtcgag cagcccatgg tcctctcctt tacatctcgt      1740
     ggctaagaag gacaattcgt ggcgcccttg tggagactat cgcgcattaa atgcacgaac      1800
     ggtgcccgac cgatatccgg ttccacactt acatgacttc agccacgcct tggcaggatc      1860
     agtactattc agcaaaattg actgtgcgaa agcttatact cagatccctg tggcgcctga      1920
     agatattccg aaaacggcga taatcacgcc tttcggtctg ttcgaaagct tgtacatgac      1980
     gttcggactc tgcaatgccg ctcagacctg gcagcgtttc ctggatggcg tattacgagg      2040
     tttaccgtgt tgttttgcct atctcgacga cgtcttggtg ttctccaagt cacccgaact      2100
     ccaccgacgt cacctgactg ctgttttcca gcgcctgagt gaagcaggca ttgtcatcaa      2160
     ctcatccaaa tgtattttcg gtgtaacgga aatagagttt ctcgggcact tgatcacccc      2220
     tagcggatcg acaccaatac tggacaaggt gcaggcgatc ttaaacatgc cgcgccctma      2280
     gacttttaaa gagttgcgcc gttacctcgg tacgataaac ttttatcgtc gccatctacc      2340
     taacgctgct gcagtgctgg aacctctgaa tgcggcacta cgtggcccca aagtaaaagg      2400
     gggggactcc cattgactgg acggaagaaa tggagacgag ctttcttcag tccaaatgga      2460
     gcctggcaga agcagcgctg ctcgctcatc cagtgcacga cgcagaactg gccattgttg      2520
     tggacgccag ccagactgcc gtwggcgcag cactgcaaca acacatcgac ggcagctggc      2580
     agccgctagg cttcttttca aagaagctat cgacgtcaca gcacacctgg agtgcctacg      2640
     accatgagtt cttgcggtat acaaggcggt aaaatacttc cgcccgtcca tggaagcacg      2700
     cccgtttgtg atattcaccg accacaaacc cctaactcac gcgtttcggt gcaacaacac      2760
     caagtgttcg ccgtgtcagt tccgacagtt ggagtttgtg tcacagttct caacagacat      2820
     tagacatatt tctggaatag acaacatcgt cgctgactgt ttgtctcgcg cgtgtgccgc      2880
     tatcactccc cctgtggact ttkaggatgt tgccaaagaa caggagagtg acgaacaact      2940
     tcgcgacctc cgcaaagaca cctccagcgg actaaaactc gaattagtcc cgattcctgg      3000
     ttcaaaccgc aagatctggt gcgacgtctc tacaggttcg caccgccctt ttctcccgga      3060
     aaaattccga cgcagtgctt tcgactgcat gcacggcctg tcacatcccg gaatcaacac      3120
     caccgtgaca ctcgtggccg cgcggttcgt ctggccgggg ttacagaaag actgccgtca      3180
     gtgggcacgc acctgcacgg cgtgccaacg taccaaagtc aggagacata cacgcgcacc      3240
     tgtcggcacc tttcccgacg cgacacgacg ttcgcccacg tccacgtgga catcgtcggg      3300
     ccactgcctc tgtcccaagg caagcactac ctgctcacca tggtggacca cttcacacgc      3360
     tggccggagg caacgcccat cgcggacatc accgccgaga ccgtcgctac cgccttcgtc      3420
     gacacgtggg tggcatgctt cggctgtccc agccacgtca cgactgaccg tggccaccag      3480
     ttcgactgct cactgttcag acacattgcc agactgtgtg gtgcacagct ccacaaaact      3540
     acgagctacc acccggcgtc caacggcatg gtcgagagac tccaccggac mttgaaagca      3600
     gccttgatct gccacgacac cgcctggatg gaagcacttc ctctcttgct cctcagcctg      3660
     cgagtcacac cgaaggaaga catcggcgct tcacccgccg acctcgtcta cggacagcaa      3720
     ctcgccattc ccggtgactt cgtcgaggaa gttccaccgc cacacgacgc ctcggccgca      3780
     cctctggcag agcgtctgcg catctacatg gccggcctcc gaccgcacgc accgacgcga      3840
     cacggcattg gcaagacwtt tgtacacgcc gacctgcagc actgtacaca cgtcatgttg      3900
     cgtaccgacg cggtacagcc accacttctc cgccctattc gggacctcwc cgcgtaatca      3960
     ctcacggcga caaaacctta agatcgaata caatggcaag cagtgtgaag tcttgattga      4020
     cagactgaaa ctggcttacg tgctgcccga accggaagcc gtccacttct tcgacccggc      4080
     ggaagacgtc atgttgacag atgacaaccc gccagctgtt actgacacac ggccgctgcc      4140
     agctgtcagc gcgccgccat gtgcgccgca gcctcagcct gcccccacca caccacagca      4200
     gccgcctcct gcgcctgcgc agccgaccgc accacgctcg ccacaggcgc ctggcccccc      4260
     accactgccg ccggcggact acgtcacgcg cgcgggtcgc cgtgtcagat tcaaacgccc      4320
     gtgctgtgta ataacaacgt agcgccacac aacgctgcat acctaaccag ctaaccagtc      4380
     gagctccgga catcacctcc cgcgtcgccg gcagtttgtc cgccgcagct cctgaatttc      4440
     cgcattcgcg cctctgtgcc tccaccgcgt cgagaccaaa actaccatgt cacacttccg      4500
     tgtgcccatg aacaatgaac agtgcaactg gtaaaccttc tttactgtgt gctagtgttc      4560
     tccgggacgt tacgcaatgt tgccgcacct ccgctgccac gagcgtcgag gcaggatcga      4620
     ctcccatgtc gtgcttccgc gtcggatttg tgattaactg tgcaacatga acagtgcttc      4680
     tctgcgagtc agtgttgtga acagtgtaac tcttgaactt tacagttcag cacaacctag      4740
     tgtgtagtta gtagtgtatt cagtgatgta cttctgcgca ccaatcgcca cgttgtgcta      4800
     ctgacagttc gcggacagcc cagtctgaca ttagccgacc acgtgtggcc acgccccctc      4860
     gccgcactgt cacgcgcatc gccagctgtg cgcactgacg tcaccacctg ccgcccaatc      4920
     gccgccgccc ggctggccgc catccgctta cactgacgtt gacctccagc gcgcgagctc      4980
     caaacagaca ctgcccgtca gctgatcggc cgcgttttct cacaactccg agctccgctc      5040
     tccaaggggg gatctg                                                      5056
//
ID   Gypsy-54_LMi-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-539
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 539 BP; 124 A; 155 C; 144 G; 109 T; 7 other;
     tgtagcggcc tggctgcctt gcagcagaaa cacgtgaaca gcgagcggca gacagctagc        60
     acaaggcagc ggcgtcagat atctgccgac gcgcacagtt cctttcatcg gcaaaaatcg       120
     tcgcagcggc gtggcgtgcg ccgaaggaga gtagtgcgag ctgtaggacg agccgwgcgg       180
     acgtcttcta cmtcctcmgt tcckacgcat atgccgcgga ccacgtgggt cgagctgaac       240
     gcgagctccc cacacataca cgcacgcgag wgttagtgcc gtgccgtctg atcgccgmga       300
     cacgtggtat ttwtcgtgcc gccgaattcg cgcatacgtg ttcgtcatgc gccgtccacg       360
     ctaatgcgac ccgacaacga ccagtgattg agcacgaaaa catttgccag agattattga       420
     tgtatcatgc agtgtcaaca ataaattcct aatccgataa atgttatttt tcatccttcc       480
     cgtcaccacc gcctacagcg aacagtagtt ggaagcggcg actatacgcg ctagcttca        539
//
ID   Gypsy-54_MSe-I repbase;    DNA;    INV; 4622 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4622
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 931-931 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. There are only 2 full-length copies
CC   of Gypsy-54_MSe in the genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..3310
FT                 /product="Gypsy-54_MSe-I_1p"
FT                 /translation="MEKVTEAEQIPGISDTTPGRPERSTSGCRSPVLNQRA
FT                 PRILPGYREVSDGGNXAFPNYGSTDSRDTRGAESVPISVMQNMMQEMMTQL
FT                 IRTTAQAFNPSNVQPAPRMRSLEHIYIPAFDPDDRTDTIQIWCRNIEELKT
FT                 EYDLTDREILNLTRKNLKGRAADWARRNYCILTNWSELKTGLIETFADEAR
FT                 YYDDLTQFMEYTSEQANNLAEYATRKWELAKKVIGVEMTEQRLVEAVISGM
FT                 SDFRIRSDLLRLTPKNLPQLIQSLNSYKRKKPIKDPDHGIASKRPRNISNS
FT                 DVSSRRCHKCHKLGHIQRDCRSNTSNRGPQNNSAPTSDNSKPSEQKPSKSV
FT                 TCSFCNRKGHAFENCFQRLNKKSKDEKMSNVNSLTLSNNKSHTVKIEGRNY
FT                 SCLIDSGAECSLMRESIGDSIKGRITXETFVLRGVGDNTFRSTRKKQCMLC
FT                 VDGLNIELDFILVPDKYIQYDVLLGQNLFNIPGLQVIFSKDSVLVSRNSYN
FT                 INLVQKDFDSVVVNSDISQECKNLLRNLLESYSDMFTSGNIVSQVTTGELT
FT                 IRLKNPDKIVQRQPYRLAPAERDHVKRLIKDLKDNNIIRDSNSPFASPILL
FT                 VRKKDGSDRMCVDYRELNSNTVRDHFPLPIIDDHISRLFAAQYFTVLDMAA
FT                 GFHQIPVARDSIEKTAFVTPXGQYEFLRMPFGLCNAPSVFQRAINTALKQF
FT                 IDKFVLIYIDDVVIFSETVEQGLERLRVVLDALQKTGFSLNVNKCKFLQTE
FT                 IEYLGRIVSNGQIKPSPGKVHALLNAPVPTTVKQVRQFCGLASYFRKFIPN
FT                 FSLIMIPLYNLTRNNTKWNWTSEHELARNKVLNCLSSEPVLTLFDPTKPVE
FT                 LHTDASSTGLAGILFQKHDNQLKVVEYFSMRTTDTESRYHSYELETLAVVR
FT                 SIKHFRHYLLGRPFTVITDCNSLKASRNKKELLPRVHRWWAYLQSFDFTIE
FT                 YRKGERIPHVDYLSRNPVTLNISNVQNYSEWLEVEQNNDPETKGIIESIQQ
FT                 GTIDKNIASGYEIQNGLLYRKVSINNKMKKLLFVPKGYQWHIIQIYHDALK
FT                 HFGWEXPLAKLENNFGFHI"
FT   CDS           3253..4263
FT                 /product="Gypsy-54_MSe-I_2p"
FT                 /translation="TFWVGKXPSKIREQFWFPHMTKRIRKYVNNCLTCKIN
FT                 KSQSGSQQIALHPIDKSPIPFHTVHMDTTGKLSGSRPTKQYAVVFVDAFTK
FT                 FVFMRPVANLTAAATVSCLKNLIYTFGTPKRIICDQAXSYTGKEFSSFCEH
FT                 WSIELHFIASGVSRANGQVERVMKVLTNCFTIVENTSKRSWKDAVGEVQLA
FT                 INSTFSKTTGHTPFQLLMGCDQSPPAISALINDVERLDLDICRQESKLRMD
FT                 ELSDTRKAAFDKTKANIVPFKLGDVVLVKQDPRVINKLDSKFRGPCVITEV
FT                 KDNDXYTVRVHKTGNELYVSHDNLRLVNSDMGRELADSLDTSEEN"
XX
SQ   Sequence 4622 BP; 1437 A; 888 C; 920 G; 1359 T; 18 other;
     tcagaagtgg gattwgtaac accaactacg cctacaaaat tattgtttca ggtttataaa        60
     aaaaaaagca gttataaata aaatggaaaa agtgactgag gctgagcaga tcccgggaat       120
     ttcggatact acgccaggac gtccagaaag gagtacttct ggatgccggt caccagtcct       180
     aaatcaaaga gcaccacgca ttctccctgg ctatcgtgaa gtctctgacg gtggaaackg       240
     cgcatttccc aactacggat caacagatag ccgtgataca aggggagcag aatctgtccc       300
     tattagtgtc atgcaaaata tgatgcagga aatgatgacg caactgattc gcactacggc       360
     acaggcattt aatccatcta atgtacagcc tgctccacgw atgcgaagtc ttgagcatat       420
     ctatattcct gcttttgatc ccgatgatcg gaccgatacc atacaaattt ggtgccgaaa       480
     tatwgaagaa cttaaaacgg aatatgacct tactgatcgg gaaattctta atctaactcg       540
     aaagaacttg aaagggcgag ctgctgattg ggcacgccgc aattattgta ttttgactaa       600
     ttggtctgaa cttaaaacag gcctcattga aacttttgca gatgaagctc gttattacga       660
     tgacttgacg cagtttatgg aatataccag cgagcaagct aataatcttg ccgaatatgc       720
     aactaggaaa tgggaattgg caaaaaaagt gattggtgtg gagatgactg aacaacgcct       780
     cgtcgaagca gttatttctg gtatgtctga tttccgtatt cgctctgatt tgctacggct       840
     tacwccgaaa aatttgccac aattaattca aagccttaat tcgtataaac gtaagaaacc       900
     tattaaagat cctgatcacg gtattgcatc taaacgccct agaaatattt ctaactcgga       960
     tgtctcgtct agacgatgcc acaaatgtca taaactagga catatacaaa gagattgtcg      1020
     ttcaaacaca tctaatcgcg gcccacaaaa caattctgcc cctacctctg ataattcgaa      1080
     acctagtgaa cagaaaccgt ctaaatcagt cacttgtagt ttctgtaata ggaaggggca      1140
     tgcttttgaa aattgctttc agcgtcttaa taaaaaatct aaagacgaaa aaatgtctaa      1200
     tgtkaacagt ttgacgctga gcaataacaa gtcgcacaca gtcaaaatag aaggccgtaa      1260
     ttactcgtgc ctaatagaca gtggtgckga atgctctctt atgcgcgaaa gtataggtga      1320
     ttcaattaag ggtaggatca cttakgagac ctttgttttg cgaggcgttg gggataatac      1380
     tttccgttca acacgtaaaa aacagtgtat gttgtgcgtt gatggcctta acattgaatt      1440
     agatttcatt ctagtccccg ataagtacat wcagtatgat gtattacttg gtcaaaatct      1500
     tttcaatata ccagggcttc aggttatttt ttcaaaagat tcagttctag tttcgcgtaa      1560
     ttcttacaat attaacctgg tgcaaaagga ttttgattck gtggttgtaa attcggatat      1620
     aagtcaagaa tgtaaaaatc tkttgcgtaa tttattggaa tcatattctg acatgtttac      1680
     gtctggcaac atagtttctc aagtaacaac tggtgagtta actattcgtt taaagaatcc      1740
     agacaaaatt gttcaaagac agccttatcg gctagcgcca gccgaacgtg atcatgtcaa      1800
     aagactcatt aaagatttga aagacaataa tataatccgc gacagcaact ccccatttgc      1860
     aagccctata ttattggttc gtaaaaagga tggtagtgat aggatgtgtg tcgattacag      1920
     ggagttaaac agcaacaccg ttcgagatca ctttccactt cccattatcg atgatcatat      1980
     aagtagatta tttgcagctc aatattttac tgtactcgat atggcggctg gatttcacca      2040
     aatccccgta gctagagatt caattgaaaa aactgctttc gttaccccck atgggcagta      2100
     cgaattcctg cgtatgccat ttgggctttg taacgcaccg tcagtttttc aaagggccat      2160
     caacactgcc ctcaaacaat ttattgacaa atttgttttg atttacattg acgatgtagt      2220
     aattttttca gaaactgttg aacaaggact tgagcgttta agggtagtcc ttgacgcttt      2280
     acaaaaaaca gggttctcgc ttaatgtcaa taaatgtaaa ttcttacaga ctgagatcga      2340
     gtatttgggt agaatcgttt ctaacggtca aataaagcca agtccgggta aggttcacgc      2400
     attattaaat gcccccgttc caacaactgt aaaacaagtt cgacagtttt gtggcttagc      2460
     aagctatttt cggaaattca ttcctaattt ttctttgatc atgattccct tatataatct      2520
     cacccgcaac aataccaaat ggaactggac atctgaacac gagcttgcta ggaataaagt      2580
     ccttaattgt ctgtcatctg agcctgtact aactctattc gatccaacga aacctgtaga      2640
     acttcacaca gatgctagtt ccactggtct agcgggcatt ctttttcaaa aacacgacaa      2700
     tcaattgaag gttgttgaat attttagcat gcggactact gatacagaaa gccgttacca      2760
     ctcttacgag ttggaaacgt tagctgtagt tagatctatt aaacattttc gacattacct      2820
     ccttggcagg ccgtttaccg tcattacgga ttgtaattct ttaaaagcct cccgtaataa      2880
     aaaagaattg ttacccagag tacataggtg gtgggcatat ttgcagtctt ttgacttcac      2940
     tatagagtat cgtaaaggag aacgcattcc ccacgtagat tatttgagtc gcaatccagt      3000
     aactcttaac ataagtaatg ttcaaaatta tagcgaatgg ttagaagtag aacaaaataa      3060
     tgaccccgaa acgaagggca tcattgaatc catccaacaa ggtaccatcg acaaaaatat      3120
     tgcttccggt tatgaaatac aaaatggttt gctgtaccgt aaagtttcta taaataataa      3180
     aatgaagaaa cttctctttg tcccgaaagg ctatcagtgg catattatac aaatatacca      3240
     tgatgctctt aaacattttg ggtgggaaaa mcccctagca aaattagaga acaattttgg      3300
     tttccacata tgackaagcg cattagaaag tatgttaaca attgtttgac ttgtaaaatt      3360
     aataaaagtc aatcgggttc gcaacaaatt gcccttcatc ccatagacaa atctccgatt      3420
     ccctttcata ctgtccacat ggacactacc ggcaagttaa gtggcagtcg acctactaaa      3480
     caatacgcag ttgtttttgt cgatgcattt accaaatttg tatttatgag gccggttgct      3540
     aatttgactg ctgcagctac tgtaagttgt ttaaaaaatt taatttatac ctttggcacc      3600
     cctaaacgca ttatttgcga tcaggctkct agttatactg gtaaagaatt ttcaagtttt      3660
     tgtgagcatt ggtctataga actacacttc atagctagtg gtgtaagtcg agcaaatggg      3720
     caggtggagc gtgtaatgaa ggttttaacg aactgcttca caattgtcga aaatacatcc      3780
     aagagaagct ggaaggatgc tgttggagaa gtacaattag caatcaatag cacctttagt      3840
     aaaactactg gtcatactcc tttccagctt cttatgggtt gtgatcagtc acctcctgct      3900
     atatccgctt taataaatga tgtagagcgc ctggacctcg acatttgtcg tcaagaatct      3960
     aaacttagga tggacgagct gtcagatact agaaaagctg cttttgataa gacaaaagcc      4020
     aatattgtac ctttcaaatt gggcgatgta gtattagtga aacaagaccc gcgagtgatt      4080
     aacaaacttg acagtaaatt tagaggtcca tgcgtcatta ccgaagtaaa agacaacgat      4140
     akatatacag taagagttca taagaccgga aatgaattgt acgtttctca tgataaccta      4200
     cgacttgtca attccgacat gggacgtgaa ttggcagatt ctttagacac ctctgaagaa      4260
     aattaaaata caactattgt attaggctaa attgtcttgc atattagtgg ccgtctggcc      4320
     aacgaccata tgtgtgcacg ataatcatgc ctttgccatg tgatttggcg ttgcatatta      4380
     ttgccatgtg atttggcgtt gcatattgtt gccatgtgat ttggcgttgc atattgttgc      4440
     catgtgattt ggcgttgcmt attattgcca tgtgatttgg taattgtgag gtcatgaaat      4500
     ttgaccatcg gatgcgcaaa ggtgtgtcta atmgtggaaa atgatgaaat tttctattgt      4560
     aaaaaaactg taagatttac tcgttcgcga gccattattt tggctgctcg tcagaatggc      4620
     cg                                                                     4622
//
ID   Gypsy-54_MSe-LTR repbase;    DNA;    INV; 421 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-421
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 980-980 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs. There are only 2
CC   full-length copies of Gypsy-54_MSe in the genome.
XX
SQ   Sequence 421 BP; 106 A; 76 C; 69 G; 162 T; 8 other;
     tgtgagagaa cgtagttatt taaaaattat ttctgtattt ttatccgttt tccgatttat        60
     gaatacagta ttgcatttga cttttcgcta cccgcatttc ccctactatg cggcgaggtc       120
     gctgtataaa acggggcgcg catctgtcga cagatcagac gctgttcaac attggacacg       180
     gcactagcaa gtgctctgaa ctgtcaggta acgtaaggtt aagatgtaat gcttgttact       240
     ctgawactgt acscatgaat tgctgatttk gwtattacat aacattgttt tgatttagta       300
     ttgctttata cttatttata caattataca attcwtcctt cttttttwtt wttwttttgt       360
     gaaatatatc tctgatatta aaacaaccca ctgactgttt ttttttattg tttctcccac       420
     a                                                                       421
//
ID   Gypsy-54_SiCu-I repbase;    DNA;    INV; 9622 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-9622
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5074-5074 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           805..3150
FT                 /product="Gypsy-54_SiCu-I_1p"
FT                 /note="gag."
FT                 /translation="MSERVTRSKGNKVHLKLSNKGRKTRAVSFENFFNDMP
FT                 TVEHSDHEGTPRSNITVKMSNAGRGNSARGPGTSRDLFPGNRENRNGILVS
FT                 IPIEHARNVHGNNNVDNQPPPPPHPPGNLNPPGNLNPPGNLNPPGNLNPPG
FT                 NLNPPGNLNPPGNLNPPGDLNPPGNPSPPGDFIPPGVNAEGNGQGDGEMDA
FT                 NGIVENRQPDNQNNDQNNNNALVNGDDRQGGGLNANAVQNRQRRRSDLHMG
FT                 NRAQYMNNSSDDHNSQENWRRQASHRSRFEIHRQHENFHRARNASRNVNSR
FT                 RHFDGSESEEHHDSFLSDHTHHREPPRGNARQINGNNSERESHFNRWLSDQ
FT                 QNAHRSFHSSNMGHVGSLDNFQNLNLGNEPPRQFQQSNQRQLNNNFAPNMH
FT                 PYLPQQRMSQNLGSFQPXSQFSNRDFYNPPPQGHYGHFNATPSFLQSYPHA
FT                 SPVVGSAYQQAQAKPVIKPFEPQTFSGYQDNVSAHEFIQGLKRYQMSMRHS
FT                 EQELLATGVPNLLHGVAYRWFITNQRIRPFRSLSEFCDRFLRQFQSMNYFE
FT                 QLRREFDNRTQGENERLADYIYVVMEYFERLEMHPTDHVIISKVMSGMNPE
FT                 YSPYFRTSQYFRTLSDLLSEAENVDAQIARCRSYRPPRVYNSNDMLLQPLE
FT                 FSYGLRRKQTESQGRSESPWRSQSPYPRRDDKHVTFNSPRKENEEKKENRN
FT                 DFSPSNKTQDYQKFSGRSNSPYPDKKNNDRDRSRSPSYGRSNSNDSNNGNG
FT                 CFRCGGPHRIRDCPSSSPKSGNGKSPSQKRQ"
FT   CDS           3093..6497
FT                 /product="Gypsy-54_SiCu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="LPVILPKIGKREKPQSKEAVDSGFVAEICQTLCISEE
FT                 ERPFTEVVIFGKKFPAFLDPGSNISLIGNKVIDILRDFEHEIKDEKRTISG
FT                 LFASHVLHSFVDIEIKIGNTSHSQKCVLAPNFLEFVLIGRDFLKSLDIVLY
FT                 SADHGYKIRKESDELIPYTEFHGSFLKTNNNRSTETAIVVDDTHLDSFMMV
FT                 LEDETDDYVPASIHSTWANELETCEEIDDDLIEMNLESLFPEKEDFLLIPE
FT                 ELEEEKKEKLREVVKPFLGMFTHKPGFCDLVKHRILTPGANPVQTKYQPMS
FT                 KGKREVFDKTFDDLVEWGVIEPSCSPWAANAFVQQNDDLSYRFLVNFKGLN
FT                 KVTKVDKYPIPSIDTILSHLGHANFFSSADLVKGFFQLAIDERDKEKSSFR
FT                 SHRGLWQFKRVAQGMVNSPATFQRCIDMLLADYLFIFAFCFFDDSLTYSKT
FT                 FEEHCEHLKKVLQKFYDAGFTINPKKVQLCRRRLKYLGFIIEPGKISPNPD
FT                 KVKKIVDLPVPTCLKELQSFLGSMGFYRRFIEDFAHKALPLYKISSPLVDF
FT                 EWSDECQKGFDDLKMGLANFTQVYLPDLNKEFIITCDGSRTAIAAVLSQEK
FT                 DGVRYPVYFASRALRPAETKGYSVSEIELAAIIFGITKYRQYIELTHFIIE
FT                 TDHRAISFLQNLKDPTGRLARWFMTLQSYSFDVRYRPGTSRVMKCADMLSR
FT                 VESLLIESSKDFDRKEIIEAQNKDPLLKKIKQCLLDQYSLSNKDGAKIHSI
FT                 AKRALLVEDGLLLRHVGPKNKIWEDEQLYYRIWIPDSLKTKVISTFHDDDL
FT                 AAHLGRRKTYLKLEQRVFWNGMSRDVDKYVSKCVRCVQAKMPHITPVPCRA
FT                 GQPETPWEVLSLDFMGSYAKSKKQNRYILVILCNFTKWVEIFPLRDASAKQ
FT                 VVNCLKIVFTKFGFPKVIISDNGTQFGSKMYIEYLNSAKIKAYYIPPYHPQ
FT                 ANNTERYNQTIKNMIRATMQRTSDWDRCLDEIAFALRTSVNDTTGHTPAYL
FT                 MFGRELRYPFDNATEMPLSKVRETKDLQERMIMIHDIARQNLLERVHNSLE
FT                 YKNKNAKDRTFSVGDLVWCKTHILSSSEKGVTAGLMPKLEGPYKVDKKLSD
FT                 HIFDLIHTETNQLNSRVHINDLVLFKQ"
FT   CDS           6533..7780
FT                 /product="Gypsy-54_SiCu-I_3p"
FT                 /translation="MDNYNLPSSSSKQHGSRKYEEREKVHPYHHGQQRRNL
FT                 VNVKNEEVKLVSRASCHPAPSNEREKSAKVQNREEFARVLTVKQKKDQGTC
FT                 ITEESIIIDDEFKAGVVGLIKDPVNLKITINRVDEDALYLGIKTHNRSFEI
FT                 TEDREILAKHKLFHPKNEVVPKTERATNPNFQCLVWNMGKRGIRCSKSRTW
FT                 NKIIKKYRNFGRKFFFPSQRKLLAYEFKRSDIKHRQLVAKRKHEEEKEKRK
FT                 IVGMRLREEKEKEEAQWGKVITPSCSKQLDIVTNSTDSRAIVPHNYIFQSD
FT                 RATSTNQIKVPLVARKKIQDTYTLPKPKEKVSVATSESNTIANKNDNAITT
FT                 IAPINSSLFDGSLTENVKNMNVEELTKWLMDSCPVESDPDQFYSGVTQDEL
FT                 DVVNELKDLSFDEFLAYMNQPD"
FT   CDS           7949..9475
FT                 /product="Gypsy-54_SiCu-I_4p"
FT                 /note="Ribonuclease D."
FT                 /translation="MSQVKANYYVEAMKRWGKAKTRPHVAHQGFMEWRHHV
FT                 NSKPPVGVHPYAEKINSWKMSESMLTTATLNVNRNRILVETDDHLELVCNE
FT                 ITLFNEIMVDTEMNRDSYLPIISLIQLSTENNDYVIDCVKLFKQIKMRLGP
FT                 ILENENKLKVFHSDSDLVPLQINFDIYVVGYINSQEVYEMFDNAEKHISFD
FT                 KMITALLGKTTVIDKTAQRADWLIRPLPKDLIDYAHNDTFYLFQAWLKLKE
FT                 RHAFLEHESFPRSKSECKVTSESLKTRSAQAAWQSYMNTISVEWQKLFSIP
FT                 GQRALFDELFEWRERVGILTDMHPHFILRPKELEFLTRAMPKHAKHLSDIL
FT                 RTNKVISIAQQGEILNIVFKHREGMFFNREPQYPVIKTVRRLTNFEIDQLA
FT                 FSGNESESDSEMEVVVNDNSLNLEQLVNKESQSVIIAPQEPRGPVELSMTK
FT                 RAKKLRRYRTNRKLKAKSQNVGKVTKRSSVGRRIRVCFQTFLKYNVKKGEL
FT                 MQFLNRYPKKLCN"
XX
SQ   Sequence 9622 BP; 3305 A; 1653 C; 1867 G; 2796 T; 1 other;
     aacttggcga tcctttagtc ttaaaatcaa agtaaacttt tactagcaat taaaatttcc        60
     tttttcgttg atacacaaga cacgatcttg gaacttctga tattttttta caactttcta       120
     caatcttgta caattactct ctacaaagca cagccatatc cattgataaa gtagatttta       180
     attttccagt tttaattgtg attttaaata ttgactgttt ctaaaaatac tttttaaggt       240
     aataagggta atcaacaagg tataattaat ggtcctaaag atagtaaggg tattaaatat       300
     tacgcaacat actcaattac gaaatacgaa ttgcttgcta gcgtttgcgt gaaagaacgc       360
     taaaagcaat cataaaaaaa cactcaattc taaatgccgt ggaaattagc cactgctcaa       420
     gtaactaacc actggttttt aaattttgtc gtaaattcaa agcaaaactt tggaactttc       480
     gtttatcatt acagccagtt acaatttaaa gaaatcttag ctttccaatc ctttcacaat       540
     ttaccaattt taaaagcttt tactgataaa ttcaatcgca atcattattt tactttagca       600
     gcagtagagt caattgtcgc ttttgttgaa agtcaacaat taagagatag cgatctcagt       660
     tttgttactg atatcgatac tccatattac agagtgagaa aactgaaaat cggtaattgt       720
     tttgtgtact gtcttccaca agtttttcct gaatcacaaa aacgggcatc aggttaaaat       780
     tattatgaga attaattcac attcatgtct gagcgggtaa caagaagcaa aggcaataaa       840
     gtacatttaa aattaagcaa caagggtaga aaaactagag cagtttcatt cgaaaacttt       900
     tttaacgaca tgccaactgt ggagcattca gatcacgaag gcacaccgag aagtaatatc       960
     acagttaaaa tgtcaaatgc ggggagagga aactctgcac gtggtccagg aaccagcaga      1020
     gatttgtttc caggaaacag agaaaaccga aatggaattc tcgtctcgat tccaattgag      1080
     catgcaagaa atgttcacgg aaacaataat gttgataatc aaccccctcc tcctccacat      1140
     ccacctggta atctcaatcc acctggtaat ctcaatccac ctggtaatct caatccacct      1200
     ggtaatctca atccacctgg taatctcaat ccacctggta atctcaatcc acctggtaat      1260
     ctcaatccac ctggtgatct caatccgcct ggtaatccca gcccacctgg tgatttcatt      1320
     ccacctggag tgaacgctga agggaatgga caaggagatg gcgagatgga tgcaaatggc      1380
     atagtagaaa atagacaacc tgataatcaa aataatgatc aaaataataa taatgcattg      1440
     gtaaatggtg acgatcgaca aggaggtgga ttaaatgcta acgctgtcca aaatcgtcaa      1500
     cgacgacgat ctgatctgca catgggtaac agagctcaat atatgaataa tagctcagac      1560
     gatcacaata gtcaagaaaa ttggcgtcgt caagcatctc atagatcaag atttgaaatt      1620
     cacagacaac atgaaaattt tcacagagca agaaatgcaa gtcgtaatgt gaactctagg      1680
     cgtcattttg atggaagtga atctgaggaa catcatgaca gtttcctttc agatcacacg      1740
     catcacagag agcctccaag aggaaatgca cgccaaataa atggtaataa ctcagaaaga      1800
     gaaagtcatt ttaatagatg gttaagtgat caacaaaacg cacatcgcag ttttcacagt      1860
     tctaacatgg gtcatgttgg ctcactcgat aattttcaaa atcttaattt aggaaacgag      1920
     ccaccccggc agttccaaca atctaaccag agacaattaa ataacaattt tgctccaaac      1980
     atgcatcctt atttgccaca acaaagaatg agtcaaaatc ttggaagttt tcaaccamaa      2040
     tcacagtttt caaatagaga tttttataat ccaccacctc aaggtcatta cggacatttt      2100
     aacgcaacgc catcattttt acaatcatat ccgcatgcaa gtccggttgt tggctcagct      2160
     tatcaacaag ctcaagcaaa accagttatt aaaccattcg agcctcagac attcagtggt      2220
     tatcaagaca atgtttcagc tcatgaattc atacaaggtc taaagcggta tcaaatgtca      2280
     atgcgtcatt ctgaacaaga acttttagca actggtgttc cgaacttgct tcatggcgtg      2340
     gcttacagat ggttcattac aaatcagaga attcgccctt ttcgatcact ttctgaattt      2400
     tgtgatagat ttttgagaca atttcagtca atgaactact ttgagcaatt aagaagagag      2460
     ttcgataatc gaacccaagg tgagaatgaa cgacttgctg attacattta tgtggtaatg      2520
     gaatattttg agcgcttaga aatgcatccc actgaccatg tcataatttc taaagtaatg      2580
     tctggtatga accctgagta ctcaccatac ttccgaacga gtcagtattt cagaactttg      2640
     tctgatttgc tgagtgaagc agaaaacgtg gatgcacaga ttgcaagatg cagaagttat      2700
     aggcctccac gagtctataa tagcaatgat atgttactgc agcctttaga attttcttat      2760
     gggctcagga gaaaacaaac tgaaagtcaa ggtcgatcgg aaagcccctg gaggtcacaa      2820
     agtccttatc cacgtagaga tgataagcat gtgacattta attctccaag gaaagaaaat      2880
     gaagagaaaa aagaaaacag aaacgacttt tctccttcaa acaagacaca agattatcaa      2940
     aaattctcag gaaggtcaaa ttcaccttac cctgataaaa agaataacga cagagacaga      3000
     tctcgttctc catcttatgg caggtcaaat agtaatgata gtaacaatgg gaatggttgt      3060
     tttcgatgtg gtggtcccca cagaattcgt gattgcccgt catcctcccc aaaatcggga      3120
     aacgggaaaa gccccagtca aaagaggcag tagactcggg gtttgttgct gaaatctgcc      3180
     aaacattgtg tatatccgag gaggaacgcc cattcacaga agttgtaatt ttcgggaaaa      3240
     aatttccagc atttttagat cccggaagca acataagttt aattggcaat aaagtgattg      3300
     acatattaag agattttgag catgaaataa aagatgaaaa aagaacaatt agtggattat      3360
     ttgcgtcaca tgttttgcat tcatttgttg acattgagat taaaattggt aacaccagtc      3420
     attcccaaaa atgcgtgtta gctcctaatt ttttggaatt cgttttaatt ggtagagatt      3480
     ttctgaaatc gcttgacatt gttctttatt ctgctgatca tggctataag attagaaaag      3540
     aaagtgatga gttaatcccg tacacagagt ttcatggttc atttctaaaa acaaacaata      3600
     ataggtcaac agagactgcc attgtagtgg atgatacaca tcttgactca tttatgatgg      3660
     ttttagaaga tgaaactgat gattacgttc ctgcatcaat acattccact tgggctaatg      3720
     aacttgagac atgtgaagag attgatgatg atctcattga gatgaattta gagagtttat      3780
     ttcctgaaaa agaggacttt ttattaatcc cagaagagtt agaagaagaa aagaaagaaa      3840
     agttgagaga agtagtaaag ccatttttgg gcatgttcac tcataaacct ggtttttgtg      3900
     atttggtaaa gcaccgtatt ttaacgcctg gtgcgaatcc agtgcaaaca aagtaccaac      3960
     caatgtcaaa gggtaaacga gaagtatttg ataaaacatt tgatgatctg gtagagtggg      4020
     gagtaataga gccatcatgc tcaccatggg cagcaaatgc ctttgtgcag cagaatgatg      4080
     atttgtcata tcgattctta gtcaatttta aagggttaaa taaagtcaca aaagttgata      4140
     aatatcccat tccttcaatt gatacaattt tatcccatct tggtcatgct aattttttca      4200
     gttcggctga tttggtgaaa ggtttctttc aactagcaat agatgaaaga gacaaagaga      4260
     aaagtagttt tcggagtcac agaggacttt ggcagtttaa gagagttgca cagggaatgg      4320
     tgaatagccc tgcgacattt caaagatgta ttgacatgtt attagctgat tatcttttca      4380
     tttttgcctt ttgttttttc gatgattcgt taacctactc taagactttc gaagaacatt      4440
     gtgagcactt gaaaaaggtc ctgcaaaaat tttatgatgc tggcttcaca ataaatccga      4500
     agaaagttca gctttgccga agaagattaa aatatttggg tttcattatt gaaccgggta      4560
     aaatttcacc aaaccctgat aaagtgaaga aaattgtaga cttgccggtt cctacgtgtc      4620
     ttaaggaact acagtcattt ttaggtagta tgggatttta ccgtcgattt attgaagatt      4680
     ttgctcacaa ggcgctccca ttgtataaaa tatcgagtcc tttggtcgat tttgaatggt      4740
     cagatgaatg tcaaaaaggt tttgatgatt taaaaatggg tcttgcaaat tttacgcaag      4800
     tgtacttacc ggatctcaat aaagaattta taataacatg tgatggttct cgtactgcaa      4860
     ttgctgcagt tttatcacaa gagaaagatg gggtcagata cccagtttac tttgcttctc      4920
     gagcacttcg tccggcggaa acaaagggtt attcagtcag cgagatagaa ctcgcagcaa      4980
     ttatttttgg cattaccaaa taccgtcagt atattgagtt aacccatttt attattgaaa      5040
     ctgaccacag agctatatca ttcctgcaaa atctgaaaga cccgacaggt agattagctc      5100
     ggtggtttat gacattgcaa tcctattcat ttgatgtaag gtaccgccca ggtaccagta      5160
     gagttatgaa atgtgctgac atgctcagtc gtgtagaaag tttgttaatt gaatcctcta      5220
     aagattttga cagaaaagaa ataattgaag ctcaaaataa agatccactt cttaagaaaa      5280
     ttaaacagtg cttgcttgat cagtatagtt tgtcaaacaa agatggtgca aaaattcatt      5340
     caattgcaaa gagagcattg ctcgttgaag atggcctgtt gttacgtcat gtcggtccta      5400
     aaaataaaat ctgggaagac gaacaattat attatagaat ctggattccc gattcattaa      5460
     aaacgaaagt tatctccaca tttcatgatg atgatctcgc tgctcatttg ggtagacgaa      5520
     aaacttattt gaaattggaa caaagagttt tttggaacgg tatgtccaga gatgtggata      5580
     aatatgtatc taaatgcgta cggtgtgtcc aggcaaaaat gccacacatc acgcccgtgc      5640
     cgtgccgtgc tggtcagcca gagacaccat gggaggtgtt gtctttagat tttatggggt      5700
     cgtacgcaaa gagtaaaaaa caaaataggt acatccttgt cattttatgt aatttcacaa      5760
     agtgggtgga gatctttcct ttgcgtgatg cttccgcaaa acaagttgta aattgtctaa      5820
     aaatagtttt cacaaaattt ggctttccaa aagttataat ttcggataat ggaacccagt      5880
     tcggttcgaa aatgtacatt gagtatttga atagcgcaaa aataaaagcg tattatattc      5940
     ctccctacca cccacaagcg aataatactg aaagatataa ccagacaata aaaaatatga      6000
     tacgcgccac aatgcagcgt acttcagatt gggatcgttg tttagacgaa attgcatttg      6060
     cgctgagaac ttccgttaat gacacaacgg gtcatacacc ggcatactta atgttcggaa      6120
     gagagctcag gtatcccttt gacaatgcaa cagaaatgcc attgtctaaa gtgcgtgaaa      6180
     caaaagattt acaagagcgc atgataatga ttcatgatat cgcccgtcaa aacttgttgg      6240
     aacgtgtaca caattcatta gagtacaaaa ataaaaatgc gaaagaccgt acattttcag      6300
     ttggtgattt agtttggtgt aaaactcata ttttatcgag ttctgaaaaa ggggtcactg      6360
     cagggcttat gccgaagtta gaaggccctt ataaagttga taaaaaactt tctgatcata      6420
     ttttcgactt gatacacact gaaacaaatc aattaaattc tagagttcat atcaacgact      6480
     tggttttatt caaacaataa aaatattttc tcgtaatttt gttctgtttt agatggataa      6540
     ttataactta ccgtcatcat catcaaaaca gcatggtagc agaaaatacg aagaaagaga      6600
     gaaagttcat ccttatcatc acggtcaaca acgaagaaat ttagttaatg tgaagaacga      6660
     agaagttaaa cttgtcagta gggctagttg tcacccagca ccaagcaatg agagagagaa      6720
     aagtgcaaaa gtacaaaaca gagaggaatt tgcacgtgtt ttaactgtta agcaaaagaa      6780
     agatcaagga acatgtatta ctgaggagag tatcatcatt gatgatgagt ttaaagccgg      6840
     tgttgttggg ttaattaaag atccagtcaa tttgaaaatt acaattaacc gtgttgatga      6900
     agatgcattg tatttgggta tcaaaacaca taacagatct tttgagatta ctgaagacag      6960
     agagatttta gcaaaacaca aattgtttca cccaaaaaat gaagttgttc cgaaaactga      7020
     aagagccaca aaccccaatt ttcaatgctt ggtttggaat atgggtaaaa gaggaattag      7080
     atgttcaaaa tctcgtactt ggaacaagat tattaaaaaa taccgtaact ttggtcgcaa      7140
     attctttttc ccgtcgcaga gaaagttgtt agcttatgag tttaaaagaa gcgacattaa      7200
     acataggcag ttagtggcaa agagaaagca cgaagaggaa aaagagaaac ggaaaattgt      7260
     cggcatgcgt cttcgtgagg agaaagaaaa agaagaagca caatggggta aagtaataac      7320
     accttcctgt tccaagcaat tagatattgt aacaaatagc accgattctc gagcaattgt      7380
     tcctcataat tatatttttc aatctgaccg tgctacgtca accaatcaaa tcaaagtacc      7440
     acttgttgct cgtaaaaaga ttcaagacac ttatactttg ccaaagccga aagaaaaagt      7500
     ctctgtggcc actagtgaaa gtaatacaat tgcgaataaa aatgataatg ctattactac      7560
     tattgctccg attaactcat ctctttttga tggtagtttg acagaaaatg ttaaaaatat      7620
     gaatgtggaa gagttgacaa aatggttaat ggattcttgt ccagttgaaa gtgacccaga      7680
     tcaattttat tctggagtca ctcaagatga gcttgatgtg gtgaatgagc tgaaagatct      7740
     ttcttttgat gagtttttag cgtacatgaa tcaacctgat taaactatgt aacatttctc      7800
     tcccattcaa taattatgtt tgtaataaat acacagtgta ctgatatgaa cgtatgatta      7860
     aaatagcatt taatgaatat tgtagtatga atagccttca aattactcaa taaaatgaat      7920
     aaaattgttc ttcctttaca aattacagat gtcgcaggtg aaagcaaatt attacgttga      7980
     ggcgatgaaa aggtggggaa aagcgaaaac tcgtccacat gtagcacatc aagggtttat      8040
     ggagtggagg catcatgtta actctaaacc accagttggt gtccaccctt acgcagagaa      8100
     aattaattcc tggaaaatgt cagaaagcat gttaactact gccacattaa atgtaaatag      8160
     aaatcgtatc ttggtggaaa cagatgatca tcttgagcta gtttgtaatg agattacttt      8220
     gtttaatgaa attatggtag acactgaaat gaatagggat tcttacctac cgatcatttc      8280
     attaattcag ttgtcaacag aaaacaatga ttatgtaatc gactgtgtaa agttattcaa      8340
     acagatcaaa atgcgattag ggccaattct tgaaaatgaa aataagttga aagtattcca      8400
     cagcgatagt gatcttgttc cgctccaaat taattttgat atttatgtcg tcgggtacat      8460
     taactcacaa gaagtctatg aaatgtttga taatgctgag aagcacattt ctttcgataa      8520
     aatgattact gcacttttgg gtaaaacaac tgtaattgat aaaactgcac aaagggcaga      8580
     ttggttaatt aggccgttac caaaagactt aattgattat gctcataatg acacgttcta      8640
     tttgtttcaa gcctggctca aattgaagga aaggcatgca tttttagagc acgagtcatt      8700
     tccacgaagc aaaagtgaat gtaaagttac ttccgaatca ttaaaaactc gttcagctca      8760
     agctgcatgg cagtcttaca tgaacaccat tagtgtggaa tggcaaaagt tgttttctat      8820
     cccaggtcaa agagcattat tcgacgaatt gttcgagtgg cgtgaacgag tagggatact      8880
     aacagatatg catcctcatt ttatccttcg cccgaaggaa ttagaatttt taactcgtgc      8940
     tatgcctaaa cacgccaaac atttatccga cattttgaga actaacaagg taattagtat      9000
     tgcgcaacaa ggtgagatct tgaatattgt ttttaaacac cgagagggta tgttcttcaa      9060
     cagggaacct caatatccgg taattaaaac ggttcggagg ctaactaatt ttgagattga      9120
     tcaattagct tttagcggaa atgaatccga gagtgattcc gagatggagg tagtagttaa      9180
     tgataactca ttaaacttgg aacagctcgt taacaaagaa tcccagagtg ttattattgc      9240
     tccccaagag ccaaggggac cggtggaact ttccatgaca aaaagagcta aaaaattaag      9300
     aagatataga acaaatagaa aacttaaagc taaatcccaa aatgtcggta aagttactaa      9360
     aaggagtagt gtgggacgaa gaattcgtgt atgtttccaa acatttttga aatacaatgt      9420
     gaagaaaggt gaattaatgc aatttcttaa tcgttaccca aaaaagttat gtaactgagt      9480
     ttgtaatttg tatcagaact atgtattttg gagtttgaga taatatgata aataaatgtt      9540
     catttctgtt aaattcgaag aaagtgttca ttaatttaac ccgttcgcgt gggaaccgct      9600
     cacttaaaaa gagaggggaa gt                                               9622
//
ID   Gypsy-54_SiCu-LTR repbase;    DNA;    INV; 1614 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-1614
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5131-5131 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1614 BP; 499 A; 228 C; 322 G; 565 T; 0 other;
     tgtagaggca ccaatcatga ttggattgag gcggagagac gaaatcatga caggatagtg        60
     aagtagcatt ctgctatcct ccagctgtta ctcaaacaca gagtctttca gaaactgaac       120
     aactcaatat cctgtccatg ttattttagg tcgattgaga ggagccttgg agcgaagtgg       180
     tcgcggagga gagtcattaa tcatttggac tcctgccagc tcgaagctct ctctacttac       240
     ttggttaaaa gtaacagtat ttattttgtc ggattttggg ggaacttgag aaatcggcgt       300
     tttaggtaag ctgtgaaacc tgttctgcgt tttattctct gagtagttta aagtaattaa       360
     agtggtttgg tggggaaata aaaggagaaa acagttaaaa cattgtgaca cttttcttca       420
     gttccagttt ttgtgccagt tcaacccaag cacttcctac tttctgtgtg gctagatttg       480
     tggcccagag aaaaggtaaa aatatattat tttgagtgtg aaaatgtggt attgatctgt       540
     gtgaattgtg tggtacgaaa gggataaaat tttaattgag tatttatctt ttgattattt       600
     tagctgggat tttctgtcaa gaggtttctg ttcttagagg tttagcgtgg cactataaat       660
     aaagtggtaa gcgtaatgaa agaggtattt atagagttta attgattcga gtgatgagta       720
     tgatgattgc gtaataatga taattatggt agtaaaaaag ttgtgtattg ttttgttgat       780
     tcacagccac ccttaacctg gtttatttcc cgtatcgtgt gtaagcgcct attcagtttc       840
     cggtctttgt tttgttcctg accagttgct gttctcatca ccataatgta cgtaatggta       900
     attgacaatt aattaattag tgatgtatgt gaaaacttga gaagcagtca ctggccaagg       960
     gttaagcctg ttttctccaa cgtaaaagtt catacggtct aacaagctat aaatgaaccg      1020
     aatagggcgt aatcgggaat tttatattaa ttgattttta taaaaaggta aaaataactt      1080
     gagtaacgct gccagtaaaa taggcttgat gttgttagct aaaataaagc tacacatcca      1140
     ttagcgtgta actcaagtag gtatttaatc gtaagcaatt aagttttaac ttttgacgta      1200
     attttaataa taattaagat gaggattggg tattaaattc ctctttaatt aattaatact      1260
     tagagtaagt tttcggatac aattctgaac ttaatgatag tataataatt tgaagagctc      1320
     ttcctttcaa ctaaatagtt aagtatcagt ttaattaaat gcaatacaat taagaatttc      1380
     ctttcgagtt ttaaagagag tttcaattca ataaatatta gagtacccgt attgctataa      1440
     tactatttct caattgtaat ttatttatgg attggctaaa agcgtgcttt gattctcatc      1500
     aatttaattt aataattatg cagtcatgat catattcctt gagtccaaat gattaatcag      1560
     taacggtagt cagcataaca ttatcttact ttctttctaa gaactaccat taca            1614
//
ID   Gypsy-54_SpEx-I repbase;    DNA;    INV; 4295 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4295
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4121-4121 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..1153
FT                 /product="Gypsy-54_SpEx-I_1p"
FT                 /translation="MARLQFEVELAADEDPKNNIIIIKSITNENGITYLIP
FT                 PSFQAAKHHLQLTKLPEFLKIKKTLQRRGHNRKVWMSVPSEILALYMDDAG
FT                 NMVFNDYLLQELTQVTSQSITDGKLLEILEKLSDKSNVNKEKHNNLSKLHE
FT                 KFVLKKFDNKTTNAKQWLQSFESECTRFDLNGDTEKISALRLFLNDSESDW
FT                 YESMLIKHSLNSLWKTWQVSFLNTFADKSWSSVTYALSYKYLNGSLLEYAL
FT                 KKQRLLLEYNSDIDTRTLTDLIVIGLPTHITSKLDRQEVTDPTLLFSALRM
FT                 HENQNKTVQKHFTEKKSSTKSEGEYKKKTPCQICYKMGKKNRFHFEDLCWF
FT                 KEDKNSNGTVKHCKNLMLEIDEFEDTKN"
FT   CDS           1141..4242
FT                 /product="Gypsy-54_SpEx-I_2p"
FT                 /translation="GYKKLNIPPLIEVEVILNDTLKCTGIYDPGSNITLIN
FT                 SKLIKVTNSKKNYFENKFNTIGGGGKTTGLIKLNGKILNIEKELNAFICND
FT                 KNFTHDLLLGLDTIKRFGLTHDGNLNIQLQNASPSADKYISPIEDNKHNNQ
FT                 ESENREFNSEIFNYEINFNEGIDVNKFDIDTAYLEHDQRMKINALLNDYKH
FT                 IFAKDKYDVGQVKNYEAFIDLQVEKYCSKRPYRCSLDDKEEIEKQIGQLLK
FT                 NELIEESYSPFAAPVTLAFKRDEGKKSRLCIDFRDLNKIITPQPHPFPLIE
FT                 DLMVKTINCKYFTTLDINSAFWSIPLRISDREKTGFVTQEGHYQWTCLPFG
FT                 LKTSPAIFQRILTNIIRKHNLSNFVMNYIDDIMVFSKTFDEHMDHLSKLLD
FT                 AIAKEGFRLKLTKCKFAAQSVKFLGHIITGNTITPLKDNLKSIAEFAAPQN
FT                 KKQIRQFLGKVNFYNKYIPNAAITLDPIHNLLRKNINFDWSADCEKAFQTI
FT                 KNNLCSAPILAIFDREAPTFIYTDASTKGIGAILKQTQRSGEIKPVAYFSK
FT                 KLNESQKKKKAIFLECLAIKESLKFWQHWLIGNSFTIYTDHKPLENLNIKN
FT                 RTDDELGDMTHYLSQYNFVIKYNPGRNNTEADCLSRNPVYESYENEEDNLK
FT                 TVNIVMIEEILEDQNKNLNMKNKHSFIKENGVYYKWNNKKKKIVLSEDFSK
FT                 TLIKKVHEHFCHIGINQIESKIRPFYTAPNLLENIKLICRQCEVCIKNKSR
FT                 LNRNYGLMSQLGPAEKPFQIMSIDTIGGFGGNRSSNKYLHLLMDHFTRYAY
FT                 ILCSKTQLTKDFIKLVDQVIKDNKVEILLSDQYPALNSKEFKKYLKDHSVN
FT                 LIFTAVDAPFSNGHNERLNQTLVNRIRCALNSKEKKTAWTTVAKECVKAYN
FT                 STNHTVTGYSPQYLLSGEPTDVLPVDLKRKQTEPGELEKDRHTAYLRSKKS
FT                 HELNKAIFDKNRIDYKFQKGDMVYIMDCNKLNRSKMDEIRIGPFEIEEMIS
FT                 DSLCRINTGKNKRSLGLYHVTKLIPQFV"
XX
SQ   Sequence 4295 BP; 1723 A; 661 C; 765 G; 1145 T; 1 other;
     aatcgacaat tgtcagagtt tgattgaata atagtagatc atggcaagat tacaatttga        60
     agttgagctg gcagcagacg aagatccgaa gaataacatc ataattataa aatcaataac       120
     aaatgagaat ggaataacat atctcatacc gccaagtttc caagcagcaa aacaccatct       180
     tcaattgaca aagctaccag aatttttgaa aataaagaag acattacaga gaagaggtca       240
     taatagaaag gtgtggatgt ccgtgccaag tgaaatatta gcactgtaca tggatgatgc       300
     tggaaatatg gtgtttaatg attacttatt acaagaattg actcaagtca caagccaatc       360
     tattacagat ggaaaattat tagaaatttt ggagaagtta agtgataaat ccaatgtcaa       420
     caaagaaaaa cataacaatt taagcaaatt acatgaaaaa tttgttttga agaagtttga       480
     taacaagacc actaatgcca aacaatggtt gcagagtttt gaaagtgaat gtactagatt       540
     tgatttaaat ggtgatacag agaaaattag tgctttgaga ctatttttga atgactcaga       600
     aagtgactgg tatgagtcta tgttaattaa acacagttta aactcgctgt ggaaaacatg       660
     gcaagtgagt tttctaaaca cgtttgcaga taaaagttgg tcctctgtga catatgcact       720
     gagttacaaa tatttaaatg gctccctgct ggaatatgca ttaaaaaagc agagactctt       780
     actagaatat aatagtgata tagacaccag aactctcact gacttaattg tcataggatt       840
     gccaactcat attacaagta aactagatag acaagaagtg acagacccaa ctctactgtt       900
     tagtgctcta cggatgcatg aaaatcagaa taaaactgta caaaaacatt ttactgagaa       960
     gaaaagctct actaaatcag aaggggaata taaaaaaaaa acaccatgtc aaatatgtta      1020
     caagatggga aagaaaaaca gatttcactt tgaagattta tgctggttca aagaagacaa      1080
     gaacagtaac ggcactgtaa aacattgcaa gaatttgatg ttggaaattg atgaatttga      1140
     ggatacaaaa aactaaatat tcccccacta atagaagttg aggttatact gaatgacaca      1200
     ctgaaatgca caggtattta tgaccctggc tcaaatataa ccttaataaa ttccaaatta      1260
     ataaaagtaa caaattcaaa gaaaaattac tttgaaaata aattcaacac aattggtggt      1320
     gggggaaaaa caacaggatt aataaaatta aatgggaaaa tactgaatat tgaaaaggaa      1380
     ctaaatgcat ttatttgcaa tgataaaaac ttcactcatg atttgctttt gggactggat      1440
     acaataaagc ggtttggatt gacccatgat gggaatttaa acattcaact tcaaaatgcc      1500
     agtccaagtg cagataaata catcagccca attgaagaca ataaacataa taatcaagag      1560
     agtgaaaacc gagagtttaa ctcagaaata tttaattatg aaataaattt caatgagggc      1620
     atagatgtga ataaatttga tattgatact gcttacttgg aacatgacca aagaatgaaa      1680
     attaatgcat tattaaatga ttataaacac atattcgcta aagataaata cgatgtaggc      1740
     caagtgaaaa actatgaagc ttttatagac ctacaagtag agaaatattg ttcaaaaaga      1800
     ccatatagat gctccttgga tgataaggaa gaaattgaga agcaaattgg acaactgcta      1860
     aaaaatgaat tgattgagga atcttatagc ccattcgcag cacctgtaac attggctttc      1920
     aaacgggatg aaggaaaaaa atcaagatta tgtatcgact ttagagatct taataagatt      1980
     attaccccac agccacatcc atttcctttg atagaggatc taatggtaaa aacgataaac      2040
     tgtaagtact ttactactct tgacattaat tctgcttttt ggtctatacc gttgaggatc      2100
     agtgacagag aaaagacagg ctttgttaca caagaaggcc attatcaatg gacatgtctt      2160
     ccttttggac taaaaacttc tccggcaatt ttccaaagaa ttctgactaa tataataaga      2220
     aaacataacc tttctaattt tgtaatgaac tacattgatg atattatggt gttttcgaaa      2280
     acgtttgatg aacatatgga ccatctatca aaattattgg atgcaattgc taaagaagga      2340
     ttccgcttga aattaacaaa atgtaaattt gcagcgcagt ctgtaaaatt cttgggacat      2400
     ataataacag gtaatacaat cacacctttg aaagataacc tcaaatctat agcagaattt      2460
     gcagcaccac aaaataagaa acaaataaga caatttctgg gtaaagtaaa tttttataat      2520
     aaatatatcc ctaatgctgc cataactctt gacccaatac acaatttact tagaaaaaac      2580
     atcaatttcg attggtcagc tgactgtgaa aaagctttcc aaacaataaa aaataattta      2640
     tgctctgccc caatactggc tattttcgac cgagaggcgc caacttttat atacactgat      2700
     gcaagtacaa aaggaattgg cgcaatactg aaacaaacac agaggagtgg agaaatcaaa      2760
     ccagtggcgt acttctcaaa gaagttgaat gaatcacaaa agaagaagaa ggccatattt      2820
     ttagagtgct tagccataaa agaaagttta aagttttggc aacactggct aataggaaac      2880
     tcattcacaa tttatacaga ccataagcca ctagaaaatt taaatataaa aaacaggaca      2940
     gatgatgaac tgggagacat gacccattat ctatcacaat acaactttgt mataaagtac      3000
     aacccaggta gaaacaatac agaagcggac tgcttaagca gaaatcctgt atatgaaagc      3060
     tacgaaaatg aagaagataa cttgaaaaca gtaaatattg taatgattga ggaaatactg      3120
     gaggaccaga acaaaaatct aaacatgaag aataaacata gttttattaa agaaaatggt      3180
     gtatattata aatggaacaa caagaagaaa aaaatcgttt tatccgaaga cttcagtaag      3240
     acattaataa aaaaagtaca tgagcatttc tgtcacatag gaataaatca gattgagtca      3300
     aaaataagac ctttctacac agcaccaaac ctactagaga atataaaatt gatttgccgt      3360
     caatgtgaag tttgtataaa aaacaagtca cgattaaata gaaattatgg actcatgtcg      3420
     caattaggac cagcagaaaa acctttccaa atcatgtcca tagacacgat aggaggattt      3480
     ggtggtaaca ggtcttcaaa taagtattta cacttgttga tggatcattt cacacgttat      3540
     gcttacattt tgtgctcaaa gacacaactg actaaggact ttataaaact ggtagatcaa      3600
     gtgatcaagg acaataaagt cgagatattg ctctctgatc aatatccagc actgaactca      3660
     aaagagttta aaaaatattt aaaagaccac tctgttaatt tgatttttac agcagtggat      3720
     gctccttttt caaatggtca taatgagagg ttgaaccaga cgctggtaaa tagaatcaga      3780
     tgtgccttga atagcaaaga aaaaaaaaca gcttggacaa cggtggcaaa ggagtgtgta      3840
     aaagcctaca actcaacaaa ccacacagtg acaggttatt cgcctcaata tctgttaagt      3900
     ggagaaccaa ccgatgtact gccagtggat ctaaaaagaa aacaaacgga acctggagag      3960
     ctagaaaaag acagacatac agcatatctc agatcaaaaa agtcacatga attgaacaag      4020
     gccatttttg acaagaatag aatagattac aagtttcaaa aaggtgatat ggtttacata      4080
     atggactgta ataagttaaa cagatctaaa atggatgaaa ttagaattgg cccttttgag      4140
     atcgaagaaa tgatatcaga ttcactatgt agaatcaaca ctggaaagaa taaaagatct      4200
     ttgggattgt accatgtgac aaagctcatt cctcagtttg tttaagtacc tactcaaatt      4260
     aacctaaggt taatttgcac tttaaggggg ggaga                                 4295
//
ID   Gypsy-54_SpEx-LTR repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-439
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4183-4183 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 439 BP; 137 A; 58 C; 75 G; 169 T; 0 other;
     tgtaagcttt gtacactatg taatgtgtgc gtggccttaa tgtgcgagcg tgtgggcgcc        60
     tccttacagg tttgtcgttg tacgaagaat gacaagtgac attaatgaca gcacactcga       120
     gttagagaat ttataatttt aaaaccggct cgtgatttat tttttgttca ttgtttaaca       180
     ttctttaata attgtaggaa agttataagg aaacttcata gctgctagta aaataataca       240
     atgtcgacct actaaaagat tggaagttaa aaacctttaa ttgtcgattt ttctattttt       300
     aggttagttc agaatacgca tgtttaaata tttgatttca ttaaagttga gtattgtaat       360
     tttataataa taataaactt ttctattttt agatcaatca aattgtgtgt ttttactccg       420
     catcatctaa catattata                                                    439
//
ID   Gypsy-54_TrVa-I repbase;    DNA;    INV; 12733 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-12733
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 299-299 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           872..3067
FT                 /product="Gypsy-54_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MQGIESYITTVFEDRQYKIRTNHFIDLLNSKFPEKLS
FT                 GLEFITTRDVLESLTEISSADIRSYLAEKLFLDTSDGPIKYKSDTQLLPVS
FT                 TKPIKIEEKPTEIQYDENSRYKNVSKFNTARLVREFGRRGFPYNCASLKEG
FT                 RAVMRKILNQEYKQANLSPLDEGSDDGETSSLLDPSLNGDDCRPVSDSKPP
FT                 KNSESTVKDIKEPTVPLVNSLPSLKPLNQAPNERAMHQYHKSTDPYDRQNY
FT                 DPNASMRSTYQPSVQQNLLNQTGFPMMPNVPNFPINNVGNCDNYPQWPHGV
FT                 PTGSKRPLYEPIKFSGQPSEDVFDFVRSYNKAARVNKWSDREKIDLLENYL
FT                 TGTALKYLKGLDETYGINLTFQQAVESLLNTFSPVHRQTRLEMELLSMKQG
FT                 INQTVEDFIISVESLARRFDINMPENKIVNICLKGLRKDIAKDLLLRPMNT
FT                 MFELREGIRVLENREFLLNQNIGGTSFGQTMVESPVTTHKDTEVIAMVKSM
FT                 QDQIKTLCANVSQPVKADPTALPISAVSNQFMSNTREKSGENHGGRNDRRG
FT                 RSPSPFRNRDGNYRSSSLTRNNLNYQSPQRNNGQWNRSYSPARYNTAYNSN
FT                 YSDSSRSKHYDSRSPRRNNENAYDARGSRNRSNSRDRNFDKDSRNQNFDKN
FT                 SGDRNFDRGSRDRYVGENSRSPTRDHMSMNRNRSTERQWSQGQNTFPQNSK
FT                 SSPKEGTICCNCGGLKLCAAQYAPCSSNSHPN"
FT   CDS           7680..9623
FT                 /product="Gypsy-54_TrVa-I_3p"
FT                 /translation="MYIAMDVQRLLLCLFWFCLTKILTCFASSLTGFDCVG
FT                 PPLQQSEISLKEVKECNAPEEAPKNSSVTIQVVQQNDDIPIKVISCKVEVL
FT                 RLVQRCSMFSDLQSVKDSIATFYPELSMSECKTMIETRSFSKYGVTDLTIN
FT                 GFSERSVLLKGTVKQDGKCEGEEYTDWFGSYSDVVVHATIKFTLYDSEATF
FT                 NAHLNEIYLKTGVKCVFTSGTCFDPVRGNSFWDSQIQDKCDDKHFSVLYEG
FT                 PAVKFNDSESLDPISYLVDEEDIAFSLKAIKKTRICHQDAYQTEYARFYVL
FT                 PKTEYGFTFAKSSRKMTAELLTYFNIKFVFLEKHISTSLRQLYSSLKIANC
FT                 QLERQLLEHHLTLALHHQNDFAFLRGGGPGFTAVTMGEVSYLLQCRPTPVE
FT                 LRQTSICYNEIPVFYNNNSMFLAPRTRILTKKGTEIDCTPQLPVKHEINGV
FT                 WYAFSPHISVAQPPSELQSRFSGNWKYESPKNLLKAGIYTQEDLQAYQRRI
FT                 SYPLESAAVQTALIREALGYHQEDKNLKFENFLTEVSLNKIIEKTTHKVWG
FT                 VFHELGTITSGMIGIIFVFKMVKTLLDMVFFGKLLHEIFGWSWKIIAAICD
FT                 SFANYLIHNHHVKQTDQPSGDFAEKGNTAYAPTNVQSALLPSCPPVYMST"
FT   CDS           3004..7152
FT                 /product="Gypsy-54_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LWWTKIVCSSVCSVFLKQSPKLVSIHLPNGSDKWIEN
FT                 SSDPTMKHNHKISTQSASLPTSKDFKAKERVKLVSFSNRPILVSPAITNGS
FT                 VSITKTVEKVVEPGVRIKVTLPHKEVLALLDTGADISIIRADLVNPHKIEG
FT                 IRGIPLITADTSPLEIMGTTLIKFEIDSVVFEYRFIVTKSLSAPLIIGNDF
FT                 AYKYFESFNYKDNYAIILNPETLKPFKIATYGSVRAVAHNIQTGQIMDESL
FT                 SLENSKYIVNTIFDDETFSTISAILDPTEPILFAYSLHMITIEPYGTAKIP
FT                 ILWKNRRNAENVTLKPSESLQKIGLELITKNIQEMSKTVALVVRNGTSKFK
FT                 TLYPSTKVAVESCQTISVISDAENTLKSPKTEQKVLEPTNCLVNENLSEKM
FT                 KESIRKLVVKYQDVFQWDKSTFKAAEANFIPQKIPIVNNSPIYQRPYRVSE
FT                 AENRVIDEHVADLLKSGAIYESSSLWSAPLLLVKKKLSEWDKKQGKIIADE
FT                 YRVAINFKKQNECLGLLRFEIPRIEDILAGYVRKRWFSRLDLFKFYNQIPL
FT                 DPEVSEVLSFSTHSGHYSYRCLPNGVHSGPGIGQKLITETFRHIQDLSCFI
FT                 DDINLATEDFKTHLLRLEQIFQACREKNLKLHPKKSIFALQEVDVFGFIIN
FT                 ETGMCPNPEKCKVIKDYPRPKTVRQVRRFIGLINYYRKFLKNLSTTLAPLY
FT                 DITKGKVKFAWGPAQEKAFNEAKNKLCEAPILTHFDPNLEIILDVDASNEG
FT                 IGGILSVKTEEGHIKPVAYASKKLTDQQKRKLSVSEKEMLAITHFCLKFRN
FT                 YIFGHHVTIRTDHRPLTFISKGKNINGTLNRMIHQISDFWYTIQYRKGIIH
FT                 SAPDALSRIYERDEPEEPITKNKSTMTDFEPAMVAVAIESQMVTRGMSESE
FT                 SANECVINQSECELTEAPPNSKITEISLLPKHFADYQLNDPNYNQIILALK
FT                 HPGAYPSPLTRKLQHYELKNGLLYRKSYGGGDKLMIPNKLRKLWLTAAHDS
FT                 KITGAHSGFKRTLSKLQDYDWPTIIKDCKNYCLSCDKCQRAKYSTIGPKGH
FT                 LEPTKIVPIPFYKIVIDISGPYNSNNRKKYVCSLVDSYTKFWYAKPTASAT
FT                 GQEVARFLLDCFAIFGFPAIIKSDNGPGLIESSLKELLHSLGIDHQLSPFY
FT                 TPRVQSLAERNFRTQGEILRAYVADNPKSWSEYIVPMTAAYNITPHSTTKV
FT                 SPHFLLFGVHPKLIPSPELRNECTFDSVQSRLEILDSVRKKALDRIQQAQK
FT                 KMRENLNIKRKEITFRIGERVLIQKPVKKKNETSKLLPKFFGPYYIVARKT
FT                 PSIYIVREKYMDPSSKSEQVHAEKMRRYYDPKFYRKSLYESEKASEILNPE
FT                 FYDPDLLLSSEDEEADLEVS"
FT   CDS           10435..11595
FT                 /product="Gypsy-54_TrVa-I_4p"
FT                 /translation="MCDPTKSFWSQFEQEWTALTGTPFQNEMPDVFTNPPQ
FT                 ISPIYGLEEVQSFFPRSVTMNSPLLEAELPDVFLNPKQFSPIRGQEEVQSL
FT                 LSSSLAIEPQASPAVPWVVHLMHNTPQNCLTTPAALLLSRYSDIGPVTNHT
FT                 PPPDDDSNKPYDPASPVRSIFFNSPSAHLTPTAIVEEYDPAKPSYSSQPIV
FT                 PLPHLLTANIPGQLSSSDAALPSFSETFHPPYDVTCYNFAPSFKHFEADFP
FT                 FTEPNPVQPSTTVASISSSTQGTAPASSSQELSVESMLPSAHQSVLPIKPH
FT                 EAKPRPPKKSKFRNCQQNVSLKNQNVKLSIQSTGKSFVTISLGRETCSLSV
FT                 HSKKPLRNSTTSVTPSGSSSLHVPKKKRKKKPKKRPRGKKSRKQ"
FT   CDS           11528..12262
FT                 /product="Gypsy-54_TrVa-I_5p"
FT                 /translation="MFRKRRGKRSRKNVREEKNLANNNLFLSFHCNFFFFF
FT                 LQFSSVLMLLLLLVLSFTSIVLSPVFLVKISLFILSLIMRVSHSISGFRGF
FT                 RHVPCMKRNFVRSTFFWKTLKLLINSKIVIFPGILLISDMLGLVQHIKTFQ
FT                 YCFETVPPLVSPLCVLESAPDSTSTHHSHILSACLVGPRCIRPVVLTSAPS
FT                 YYARTHALANGFLAHNSTFRVVLCALFSSVFIDVLNTLRTFDFDGLNLATC
FT                 NSLS"
XX
SQ   Sequence 12733 BP; 4072 A; 2566 C; 2387 G; 3707 T; 1 other;
     atggtggagg cgctaaaaat atcccggatt gtttaatttc gtggtgaatg gattctttaa        60
     aaatcacagt gaattaaata caaccgattg ttttcctcgt taagtgaaaa aaaaaaaaaa       120
     aaaaaaaaaa aaatcagtgc attttctgct gtgttatttt gacataaatt ttcaaaaaaa       180
     tatcgtgttt ccagcaattg atattatagt aaaaaaatat ataactctaa ggtttggctg       240
     ctcatgaacg tgatttaaat actttcattt cagcgaccct gctttttcat catagttctc       300
     cataatctgc atttagcgta ataatatttt actgctcttt tgcggattag taaaaattgt       360
     ttcgaaagtt ttatgagtgt cacagtgaaa agaaaattgt gtgtagcacc ctcaccggta       420
     gctctcatgc gatttttttt acaaataaaa ttgtgtttag caccctcacc ggtagctcta       480
     atacggtttt ataaaattac aaattgtgtt tagcaccctc accggtagct ctgatacgat       540
     tttatgtaat ttcaaattgc gtttagcacc ctcattggta gctctaatgc gattaaatgc       600
     aattttaact tgtgtttagc accctaacgc ggttgctcta atatgattta agcttgcatt       660
     ataacgactt ctacttatct agctccatct tggatgctgt gatgaaaata ggagtcgaca       720
     ccatcattca taaatccttt tgaaataatg aataatatga gtcccacagg taagagcttc       780
     gttttgatca ataagtaaag taagtatttt ccttaactca caagagtctc taacggtaat       840
     taaaacatcg tagcgcgcgc atgacttcaa aatgcaagga atagagagct atataacaac       900
     agtgtttgaa gataggcagt ataaaattag aaccaatcat ttcatagatt tattgaacag       960
     taaattccca gaaaaattaa gtgggttgga gtttattaca accagggatg ttttggaaag      1020
     cctgacagaa atttcatctg cggatatcag gagttacttg gcggaaaaat tgtttttgga      1080
     cacctcagat ggaccaatta aatacaaaag tgatactcag ttgttgccgg tgtctactaa      1140
     accgataaaa attgaagaaa agcctacaga aattcagtat gacgaaaata gtcgctacaa      1200
     aaacgtctct aaatttaata cagcccgact tgtgagagag ttcggcagga gaggtttccc      1260
     atacaactgt gcttctttga aagaaggacg tgcagttatg agaaagattt tgaatcagga      1320
     atataaacag gcaaatttgt cgccattgga cgaagggtca gatgatggag agacttcctc      1380
     acttcttgat ccttctttaa atggcgacga ctgtagacct gtaagtgata gtaagccacc      1440
     gaaaaacagt gaaagcaccg tgaaagacat taaagagcca acagttccac ttgtaaattc      1500
     cttgccatca ctcaagcctc taaatcaggc gccgaatgaa cgagctatgc atcagtatca      1560
     taagtctact gacccatatg accgtcaaaa ctatgatccg aatgcaagta tgagaagcac      1620
     ttatcagcct tcggtacaac agaacctctt gaatcagaca ggattcccga tgatgccaaa      1680
     cgtaccaaac ttccctataa ataatgtggg aaattgtgat aactatcctc aatggccgca      1740
     cggagtgcct actggatcta aaagaccgtt gtatgaaccc ataaaatttt ctggccaacc      1800
     gtcagaagat gtttttgact ttgttagaag ttataataaa gcagcgagag taaacaagtg      1860
     gtcagatagg gaaaagattg atttattgga aaactatttg acaggtacgg ccctgaagta      1920
     cctcaaaggt cttgatgaga cgtatgggat aaatctcacg tttcaacaag ccgttgagtc      1980
     tctgttaaat accttttcac cagtccacag acagactcga ttggaaatgg aacttttaag      2040
     tatgaaacaa ggcataaacc aaactgtcga ggacttcata atttcagtgg agtctttggc      2100
     ccgacgattt gacataaata tgcctgaaaa taaaatagtt aatatttgct taaaaggcct      2160
     gcgtaaagat attgctaaag atcttctgct cagaccaatg aataccatgt tcgaattgcg      2220
     agagggaatt cgagttctag aaaacaggga atttttgttg aaccaaaata taggtggtac      2280
     gtcatttggt caaactatgg ttgaatctcc tgtgactaca cataaagaca cggaggtgat      2340
     agccatggta aaaagcatgc aggatcaaat aaagacattg tgtgcgaacg ttagtcagcc      2400
     ggtaaaagct gacccaacag cgttgccgat cagtgccgtg tctaatcaat tcatgagtaa      2460
     tactagagag aaaagtgggg aaaaccatgg gggaagaaac gacagacgag gcagatcgcc      2520
     atctcccttt cgaaacagag acggaaatta tcgatcttcc tcactgacta gaaataatct      2580
     gaactatcaa tccccacaga gaaacaatgg ccaatggaac agatcttatt caccagctcg      2640
     atataatact gcttataata gcaattattc agatagctct aggtcaaaac attatgactc      2700
     aagatctcca cgcagaaaca acgaaaacgc ttatgatgcc agaggctcga gaaatcgaag      2760
     taattcgaga gatcgaaatt ttgacaaaga ttcgagaaat caaaattttg ataaaaattc      2820
     gggagatcga aattttgata gaggttcgag agaccgctat gttggtgaaa attcgcgatc      2880
     accaacgaga gaccatatgt ccatgaatcg aaatcgatcc actgagaggc aatggagtca      2940
     ggggcagaat actttcccgc aaaacagcaa atcgagtcca aaagaaggca ctatttgttg      3000
     taattgtggt ggactaaaat tgtgtgcagc tcagtatgct ccgtgttcct caaacagtca      3060
     cccaaactag tttctatcca cttgcccaat gggtccgaca aatggataga aaattctagt      3120
     gacccaacca tgaaacataa tcataaaatc agtacacaat ctgcctcatt acctacttcc      3180
     aaagatttta aggcaaagga acgggttaaa ttggtttctt tttctaatcg accgatttta      3240
     gtatccccag caatcacgaa tggtagcgta agcataacaa aaacagtaga gaaagtagtt      3300
     gagccaggag tgcgaataaa agtaacgctc cctcataagg aagttttagc tctattggac      3360
     acaggtgcgg atatatctat tattcgtgcc gacctagtaa atcctcacaa aatcgaggga      3420
     ataagaggta ttcctctcat tacagccgat acgagtccat tggaaattat gggaacaacg      3480
     ctgataaaat ttgagataga ctccgttgta tttgagtaca gatttattgt aacaaaaagt      3540
     ctaagtgctc ctttaatcat cggtaatgac tttgcgtata aatattttga gtcgtttaat      3600
     tataaagata actacgcaat cattctgaat ccagagacat taaaaccatt taaaattgct      3660
     acctatgggt ctgttagggc agtagctcat aatatccaaa caggtcaaat catggacgaa      3720
     agtctatctt tggaaaatag taaatatatt gtaaatacaa tctttgatga cgagactttt      3780
     tctacaatct cggctatttt ggatccaacg gagcctattt tgtttgcgta ttccctgcat      3840
     atgataacta tcgagcctta tggaaccgca aaaataccaa tattatggaa aaacagaagg      3900
     aatgccgaaa atgtaacatt aaagcccagt gaatctcttc aaaagatagg acttgagctc      3960
     ataaccaaaa atattcagga aatgagcaaa acagtagcac ttgtagttag aaatggaact      4020
     tcaaaattta aaaccttgta ccccagtaca aaagtagctg tcgaaagttg tcagacaatt      4080
     tctgtgatct ccgatgcaga aaacacactg aagtcaccaa aaaccgagca aaaggtgctc      4140
     gaaccaacaa attgcctagt taatgaaaat ctatcggaaa aaatgaagga aagcattagg      4200
     aagttagttg taaaatatca ggacgtattt caatgggata aatcaacgtt caaagctgca      4260
     gaggcaaatt ttatacctca aaaaataccg atagttaata atagtccgat ttatcagcga      4320
     ccttatcggg tctcagaggc agaaaatcga gtcattgacg aacatgttgc cgatcttcta      4380
     aaatcaggcg ctatttatga aagttcaagt ctttggagtg ctccgttact cttagtcaaa      4440
     aagaaacttt cagaatggga caaaaagcag ggcaaaatca ttgcagatga gtatagagta      4500
     gcaattaatt tcaaaaaaca aaatgaatgc cttggtttgt tacgtttcga aattccgaga      4560
     atagaagata ttttagcagg ttacgttcga aaacgttggt tttcaaggct tgatctcttt      4620
     aaattttaca accagattcc gttagatccc gaagtttcag aagttttatc attttcaacc      4680
     cattcaggcc actattctta tagatgtctg ccaaatggcg ttcactcagg gccaggaata      4740
     ggacagaaat tgatcactga aactttccgt catatacagg atctttcttg ttttattgac      4800
     gacataaatt tggcaacgga ggattttaaa acgcatttat tgcgtttgga acaaattttt      4860
     caagcttgtc gagaaaagaa tctgaaatta catccaaaaa agtcaatttt tgctcttcaa      4920
     gaggttgacg tctttggatt tatcataaat gagaccggta tgtgccctaa ccctgaaaaa      4980
     tgtaaagtaa taaaagacta tccacgtcca aaaactgtgc gtcaagttag acgattcata      5040
     ggccttatta attattacag aaaattctta aaaaatttat ctacgacatt agcgccgttg      5100
     tacgatataa caaaagggaa agttaaattt gcttgggggc cggcgcaaga aaaagctttc      5160
     aatgaggcaa aaaataaatt atgtgaggct cccatactta cgcattttga cccaaattta      5220
     gaaataattc tggatgtaga tgcctctaat gagggaatag gaggaattct tagtgttaaa      5280
     actgaagaag gtcatatcaa accagttgcg tatgcgagta aaaaattgac ggatcagcaa      5340
     aagcgcaaat tgtccgtgtc tgaaaaagaa atgcttgcaa tcacgcactt ttgtctcaaa      5400
     tttagaaact acatatttgg tcatcacgtc accattagga cagatcatag gcctttaacc      5460
     ttcatatcga agggcaaaaa tatcaatggc acgttgaata gaatgattca ccaaatatct      5520
     gatttttggt ataccattca gtaccgaaaa ggaatcattc attcagcgcc ggatgctctc      5580
     tctcgtattt acgagagaga cgagccggag gaaccaatta cgaaaaataa atcaacaatg      5640
     acagattttg aacccgctat ggtggcagtg gcaatagagt cgcaaatggt aacaagaggt      5700
     atgagtgagt cggaaagtgc caatgagtgt gtaatcaacc aatcagaatg tgagttgaca      5760
     gaggctcctc ccaattcaaa aatcactgaa atttcacttt taccaaaaca ctttgctgac      5820
     taccagctta atgacccaaa ttataatcaa ataattttag ctttaaagca tcccggagca      5880
     tatccttcac ctcttaccag aaaattgcag cattatgaac tgaaaaatgg tctcctttac      5940
     aggaaatcat atggaggagg ggacaaatta atgatcccca ataagttgcg gaaattatgg      6000
     ttaaccgcgg ctcatgactc taaaattacc ggggctcact caggttttaa acgaacgttg      6060
     agtaagctcc aagactacga ttggcccact ataattaaag attgcaaaaa ttactgcttg      6120
     tcatgtgaca agtgccagcg ggctaagtat tcaaccatag ggccaaaagg tcacttagaa      6180
     cctacaaaaa ttgtacctat ccccttttac aaaatagtaa ttgacatttc aggtccttac      6240
     aattccaata atcgaaaaaa atacgtttgt tctctggttg attcgtacac aaaattttgg      6300
     tacgccaaac caacggcctc agctacagga caggaagttg ccagattttt gctcgattgc      6360
     tttgcgattt tcggatttcc ggcaataata aaatctgaca acggtcccgg cttaatcgag      6420
     tcaagcctca aagaattatt acattcctta ggcattgacc accagctatc gccattttac      6480
     actccaagag ttcagtcttt ggcggaaaga aattttagaa ctcagggaga aattttgcgc      6540
     gcatatgttg ctgataaccc aaaatcctgg tcagaatata tcgtccctat gacagcggct      6600
     tataacataa ctcctcactc aacaactaaa gtcagtccac attttctctt atttggtgtc      6660
     catccaaaac tcattccttc tccagagtta cggaatgaat gtacttttga ctctgtccaa      6720
     agtagattgg aaattttgga cagcgtcaga aaaaaagcgc tcgacagaat acaacaagca      6780
     caaaagaaaa tgagagaaaa tttaaacata aaacgaaaag aaataacttt tcgaatagga      6840
     gaaagagtat taattcaaaa gcccgttaaa aagaaaaatg agacctccaa attgcttcca      6900
     aaatttttcg gtccctacta tattgtagcg agaaaaacac catctatcta tatagtccgt      6960
     gaaaagtata tggacccctc ttcaaaatct gaacaagttc atgctgaaaa aatgaggcga      7020
     tactatgatc caaaattcta tcggaaatca ctgtatgagt cagaaaaagc ttctgagatt      7080
     ttaaatccgg agttttatga ccccgacctg cttcttagca gtgaggatga ggaagcagac      7140
     ctagaggttt cataaaattc cttacggtag tattatatac gtcgataaga catattgatt      7200
     acgtttattt caatagatta gattttagat gataagttaa ttaagaaact acttaaagat      7260
     aatagaagca tatagcttga tattcaaata catttgacaa caacgcctct catcaagatt      7320
     ttggccagcg cggcacggca tcggcaccca gcgctgcgca gtggctggac cacttgaata      7380
     gtgaagtgtc aagctataca cttaaacgca cagtaactca tggtatccac cgcatcgtct      7440
     caatatgctc aggcttcttt gattcagggt tgccaaattg tacttattca cttagatggg      7500
     taccacttgg caatgctgtt tcatcgaaag tttttctttt ttcttcaggt tctgtcctta      7560
     tgttttagga ctctgattac cctattatat taacccgagt acatatagct ataataatta      7620
     gtaattaatt aacttcctct ttttcctcaa cagagaaatt ggtacctggt ttccgtccta      7680
     tgtatatcgc catggacgta caaagattac ttttatgttt gttttggttt tgcctcacga      7740
     agattttgac atgcttcgct tcttctttaa ctggtttcga ctgtgtgggt ccaccactgc      7800
     agcaaagtga gatatcttta aaggaagtca aggagtgcaa cgctcctgag gaagcgccaa      7860
     aaaattccag cgtcaccatt caagttgttc aacagaatga tgacattcct attaaagtga      7920
     tttcttgtaa agtagaagta ctgcgccttg tgcaacgatg ctctatgttc agtgacttac      7980
     aatcagtcaa agactctatc gctacatttt atccagaact atccatgtca gaatgtaaaa      8040
     ctatgattga gacaagaagt ttttcaaaat atggagtaac agacttaact attaacgggt      8100
     tttcagaacg tagtgtattg cttaagggga cagtgaagca agacggaaaa tgcgaaggag      8160
     aagaatatac tgattggttt ggatcttata gtgatgttgt ggtgcatgca acaattaaat      8220
     tcacattata cgacagcgag gccaccttta atgcacactt aaatgaaata tatttaaaaa      8280
     caggggtgaa atgcgttttt acatctggaa catgctttga tccagttaga ggtaactcgt      8340
     tctgggattc gcaaatccaa gacaagtgtg atgataagca tttctcagtc ttatatgagg      8400
     gccctgctgt aaagttcaat gattcggaaa gtttggatcc gatttcgtat ttggtagacg      8460
     aagaggatat agcttttagt ctcaaggcta tcaaaaaaac gagaatctgt catcaagatg      8520
     catatcaaac agaatatgca agattttacg ttttgccaaa aacggaatat ggattcacct      8580
     ttgccaaatc ttctcgcaaa atgacggcag agttgttaac ctattttaat atcaaatttg      8640
     ttttcttaga aaaacacatt tccacgtcgc ttcggcagct ttattcatca ttaaaaattg      8700
     caaactgtca gttagagcgc caacttcttg agcatcattt gactcttgcc ttacatcacc      8760
     aaaatgattt cgcgttttta cgagggggtg ggcctggttt cacagcagta acaatgggcg      8820
     aagtatctta cttactgcaa tgcagaccta cgccagtaga attgagacaa acatcaatat      8880
     gctataatga gatacctgtt ttttataata ataacagtat gtttcttgcg ccaagaacta      8940
     gaatattgac aaaaaaagga acagaaatcg attgtacacc ccagctccct gtaaaacacg      9000
     aaataaacgg tgtttggtat gcttttagcc cacatatttc tgtcgcacaa ccgcccagtg      9060
     agttacaatc gagattttca ggcaactgga aatatgagag cccaaaaaac ctattgaagg      9120
     ctggaatcta cacccaagaa gacctacaag cgtatcaaag gcgtatatct tatcccttag      9180
     agagtgccgc agtacagacc gctcttatac gagaagcgct aggatatcat caagaggaca      9240
     aaaatttaaa attcgaaaat tttctgactg aggtctctct caataagatc atcgaaaaaa      9300
     ctacacacaa agtttggggt gtctttcatg agttaggtac aataacatca ggaatgatag      9360
     gcattatttt cgtgtttaaa atggtcaaaa ctttacttga tatggtcttc tttggaaagc      9420
     ttctccacga aatcttcggg tggtcttgga aaataatagc agcaatttgc gactcgttcg      9480
     cgaattactt aattcataac catcatgtga aacaaacaga ccagccctcc ggtgatttcg      9540
     cggagaaagg caacactgct tatgctccta caaatgtgca atcggctttg cttccttcct      9600
     gtcctccagt ttacatgtct acttagacta caaaaactac ttttatacct gttacagaca      9660
     taagaaatca aaaaatacca ttgagatgaa gcctgaacta atcattcaga taatcgaggc      9720
     caccttcctt gaaaaaatga acaactcgga tttttctaca gtccagtttt ccatttttgg      9780
     acccgcgtta caggagcgcg tcctaaaagc gcacctttct tttaccttgc gcaacacaat      9840
     aaagccgatg accgcttcac tttccctaga ggaaagtgga cgatcaatca tgataagaaa      9900
     attaggcgaa gcgccctttt ttaccataat gtacgaacca acaacaacca aatccatgta      9960
     tatgattcgc cttagttgag tatgtttggt tataccgcaa caagcaggca tactcaacca     10020
     tttctgttta atgtcattta tatttcaaaa tcaaacaaaa aaaaaaaaaa amaaaaaaaa     10080
     aaaaaaaaca aaacaaaaaa aatgtttcac gatgctgcct gcatcatgtg ttatacgtct     10140
     taagttttat ttttgtatgc cttagtatat aagatagatt gtgattcttt gaccatcaca     10200
     atatttagcg tattaagctg tccagttcga cgtcataagg agtccaacgc caaccacttg     10260
     tatatcgttg acagatttaa gatttggctg agtgggattt gtcttcttct tccgatcaga     10320
     cctgcaatcg aatgacccat cttcatttta ttgacaattt tgatctatct cagactctca     10380
     agtggaaatt tcttgcccta ggtccctttc acatcaactt ttcagtcttt cgcgatgtgt     10440
     gacccaacca agtcattttg gtctcagttt gagcaagaat ggacggcgct tacgggaact     10500
     ccattccaaa acgagatgcc ggacgtattc acaaaccctc ctcagatttc gccgatttat     10560
     ggactagaag aagtgcaaag tttctttccg cgttccgtta caatgaattc accattattg     10620
     gaagccgagt tgccagatgt cttcttaaac cctaaacagt tttcaccaat tcgtgggcaa     10680
     gaagaagtgc aaagtctttt atcaagttcc cttgccattg agccacaagc gtcaccggct     10740
     gtgccatggg tggttcattt aatgcacaac accccacaaa actgtctaac aactccagca     10800
     gcgttgcttc taagcagata ctcggacata ggacccgtca ccaatcacac tccgccaccg     10860
     gatgatgatt ccaacaagcc ttatgacccg gcatcaccgg ttagatctat ttttttcaat     10920
     tctccctccg cacatttaac gcccactgca atagttgaag aatatgaccc ggcaaagcca     10980
     tcttattcct ctcaaccgat cgtccctctt cctcacttac ttacagcaaa catacctgga     11040
     caattatcat catccgatgc tgcattacca tcgttctcag aaacattcca tcctccctat     11100
     gacgtcacct gctataattt tgcacctagt tttaagcatt ttgaggctga ttttcccttt     11160
     acagaaccaa atccagtaca accatccacg acagtggcat ccattagttc ctcgactcaa     11220
     gggactgctc ctgcatcctc ttctcaggag ctgtccgttg agtcgatgct accatctgcg     11280
     caccaatctg tcctcccaat caagccacac gaagcaaaac cacgtccacc taaaaagtct     11340
     aaatttagaa attgccaaca aaatgtgtca cttaaaaatc aaaatgttaa attgtccatt     11400
     caaagtacag gaaaaagttt tgtaacgatt tcgcttggta gggaaacttg ttccctgtct     11460
     gttcactcta aaaagccctt aagaaattct accacttccg ttacgccatc gggctccagt     11520
     tccttacatg ttccgaaaaa gaagaggaaa aagaagccga aaaaacgtcc gcgaggaaaa     11580
     aaatctcgca aacaataatt tgtttctttc tttccattgc aatttttttt tctttttctt     11640
     gcaattcagt tcggttctga tgttactact tttacttgtt ttgtcgttta cttcaattgt     11700
     tttgtcacct gtgttcttgg ttaaaatttc tctgttcatt ttgtcactta ttatgagagt     11760
     ttctcattct atcagcggtt tccgcggttt tcgccatgtt ccttgcatga aacgaaattt     11820
     tgttcgttcc acattttttt ggaagacttt aaaattgtta attaatagta agattgttat     11880
     cttccctggg attctcctca ttagcgacat gctgggtttg gtgcagcata taaaaacgtt     11940
     tcaatattgt tttgaaacag ttccgccact tgtaagtcca ctgtgcgtcc ttgaatctgc     12000
     tccagactcg acttccaccc atcattcaca cattttgagt gcctgtctcg ttgggcctcg     12060
     ctgcataagg ccggttgtct tgacttcggc tccctcttac tatgctagga cacatgctct     12120
     tgccaatggt tttctcgcac ataattcgac attccgtgtc gtcctctgtg cgttattctc     12180
     ttctgtattc attgatgttc ttaacacact tagaactttt gattttgacg gcctaaatct     12240
     ggcaacatgt aattccttgt cataggttca cggctctctg ttgagtgttc atctgccctg     12300
     acaacggcac tccagccacc gtcaaccatc agcaccgtgt tgtcggttct gtcgttcgga     12360
     tgctcagctc gcccttgcag ttaggatcct ggtgacagat ctggcaactc gtggttgcca     12420
     ctgagaattc gtttctgcat gtggattcaa gggtgttcag aaacttcaat ggtggtttac     12480
     cttacaacgt atagttgtca tgctctcgaa atcttgtgtg atcctactgg gggaaacatc     12540
     tgtattttac acatatgact ctttttctgg caaaatgttt tgaaataccg cctcttttat     12600
     tattgttaaa ttacttgcac ctcatttata cctttcttac aatttttttt tattttttgg     12660
     gcgttgtaga cctttatgtt tgtagcacgg ttaccttttg aaattacttt gtaattttgt     12720
     ttgcccccgg aga                                                        12733
//
ID   Gypsy-54_TrVa-LTR repbase;    DNA;    INV; 463 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-54_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-463
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 358-358 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 463 BP; 115 A; 124 C; 89 G; 135 T; 0 other;
     tgtagtgcgt ggcatggtta ccttttccat acgatttagc catgcacacg cactgcatcc        60
     tcaatttcaa acttcgcgcg gttctacagg aagcgcggtt gcgggactcc ccactccaag       120
     cattcgcgga gctcgtggtg gggattcggg cggccgagct tgcatgtagg accaagcagt       180
     tgcctcgggc actctctttt cttgtttcaa atacgtaagt tcgttactca taaccctccg       240
     ggtataagct tagatttaag tcacctagtt catgagcagc aaagccctga accaaaacct       300
     ttagtgctgc gtcactatcc ttagtgctgc gtcactaccc tttagtgctg cgacactatc       360
     atttcatatt ttcacagtga aattaaagta acattttata tttaacgccc caacatcatc       420
     gtatattcat tcactaaaac caacatcatt taacaccctt tca                         463
//
ID   Gypsy-550_AA-I repbase;    DNA;    INV; 4407 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-550_;
KW   Gypsy-550_AA-I; Gypsy-550_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4407
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4407
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >97% similar to each other.
XX
SQ   Sequence 4407 BP; 1408 A; 833 C; 1154 G; 1012 T; 0 other;
     tggcgtcaga agtggaaaag ttttcctttg attttgcgta ggaaagccgc tttaaactag        60
     tttatcgaag cttgaaagaa gcacggatgt gtgaaccatc atcggaagta acagaagatt       120
     gcagattccg cggattacga aagcattcgt ggagttaacg ttggcgttgg tttcagctga       180
     gtgcgacaag aataagaaga acctgagaag attgcaaaat gcgctgagca agtgaaaagc       240
     taaaagacat acgtcaaaat gagtgttgtt ggtgtgcacc ctccgcggtt cttggatgtt       300
     ggcagtgaga atctcgcaga ggcatttcgc gatttcaaac agtcatggac catttttgtg       360
     ttagcttccg agatagaagc gaaacctgac aacgttaaag ttgcgttgtt gaagaatttt       420
     atgggtttgg aggccgtaaa gtgctagaaa cgctactgcc tgatgcagag caagtgaatc       480
     cagaagcaat tttgaatgcg ttggaaggat attgtttgcc gcagaccaat gaaacttatg       540
     agcggtttgt ttttaacacg gcggtgcaac gcgaaaatga agacgtgaat gagttcgtca       600
     gtaggctgcg aaagttatca gtgtcgtgta atttcggtga tcttaaggac tcaatgattc       660
     gcgatcgcat tgtggtcggt atcagatcgg acgatacgcg aaaggcattg ctaaaaacag       720
     cgaacttgac gcgattgatg cttgccgggc gcagaagttg gttgatgatc gaatgtcagc       780
     gatgaaagtg aagcaagaac cgcgagaatt agaaggtgaa atggaaacga ttgcaaagtg       840
     tcgagtggaa aaatctaaat atcaagagcg gaaaaagtgt aaatattgcg gccgagatga       900
     tcataagatt ggttgccgcg aagaatgtcc agcaaatggc gtgacatgcc acaactgtgg       960
     gaagcaaaat cattttgcaa gagtttgccg gatgaagcca gagaagaaag aagattcaaa      1020
     atccgagtat tcacgcaaga agaaattcgc gaagaaagtg aataacattg atgaaagtga      1080
     cagtgattcg tccgactatg ttgcgaatgt ggaagaggtc aacgtcgtgg aaaagaaaat      1140
     tacgaccgga attagtttct ctgtggggaa aaatgtcaag gaaaagaaga ttcggtgcca      1200
     ggtcgatact ggggcgtcat gtaacgtgat gacgcttcat gcattaaagt ttatcacgga      1260
     tgagcaagta gagctggagc caagcgtaac gaagctcaag ggttttggcg gacaaatggt      1320
     gccatcgatt ggcagagcag ttttgcatca tcgaggtgaa tcgaagcgat tcagggtggc      1380
     ttttcaggtt gtagatttac caccgaaagt cctgcccatg cctctactcg gatacaaaac      1440
     ctgtattgcg ctcggaattg tgagcataaa tagtgtgaag gtttgcgagg aagaaaagga      1500
     taagaacagt gtgaagaatc aaaacgcggc cgaagtggtg gatcggttca gtgatgtgtt      1560
     tgtgggagac ggtaaactga aaggaaaagt gcatatagaa ctaaatgatg agcgaccaaa      1620
     agtacaagaa ccaagaagag taccggttca gataagagaa aaactgttaa gtgaactgga      1680
     gaacctcgag aaaagaggaa taattgaaaa agtgatcgaa cctacggagt ggacaagtaa      1740
     tatcgttaca gtgatgcgaa agggaaaaat ccgaatttgt ttggatccta tggatttgaa      1800
     tcatgctatc aagcgtccta ggttccagat gactactctt gaagagatac tcccggacct      1860
     gaaggatgct aaggtatttt caacattaga tgtcagaaac gggttctggc atgtggagct      1920
     gacggaaagc agtagcagat tgacagcatt ttggacgcca gagggtagat acgtatggaa      1980
     gacactacct tttggtctgt catgtgcgcc agaagttttt caactgaaat tccaggaagc      2040
     acttcacggg ctgaaaggaa tagaggtgct tgttgatgat attctttgcg ttggacgtgg      2100
     caaaacacag gaggaagcca tccaagacaa caacaaaatt ttagcagccc tgttgcagcg      2160
     atgtcgcgaa actggaataa aactcaaccg gacgaaaatg aagcttaacc agacggaggt      2220
     acggtttttc ggtcacattt tgtgtaagga aggcctgaaa ccggatccgt cgaagacgtc      2280
     ggcaattcaa gcgatgcctg aaccaaagaa cgtttcggag ctacaccgtt ttatggggct      2340
     agcgacatac atggcgaaat tcattccttg tctgtccgag gtgagtgtcc cgctgcgaaa      2400
     actgctgaaa ggcgtagagt ggacttgggg caaggcagag caagcagcat tcaaccagtt      2460
     gaaggaaagg attgcaaaaa ttacgtcgtt aagatatttt gatccggaac tgcaaactac      2520
     catccagtgc gatgcgagcg gatacgcgtt gggagcagtg ttactccagc agggagagcc      2580
     gataatgttt gcgtctagaa tgttgtcggc tacagagtag cggtatgcgc aaatagaaaa      2640
     ggagactctg gcgatccttt ttgcgtgtaa acgattcgac cagtacatat ttggtggaag      2700
     gaaagtcgtg gtggaatcag accatcaacc gttgcaaacc atcttcaaaa aaccgttggt      2760
     ttcagcaccc aatcgtatta aacaaatgat gctaaggcta cagagataca acttggaaat      2820
     caggtatgtt aaaggtagtg aattgatctt ggcggacact ctatcgagaa acatcgacgc      2880
     aaataggaca acggagaacg atgaatggag taaactgtgg aacgtgattg aaaatgtgaa      2940
     cgctttggat gaagttgatt tgcaagaagc aacgctggag tatattcgaa aggagaccca      3000
     acgggacgaa attttgcaga ttctcaagac gtacataatg aacggctggt gtggcgataa      3060
     atcgacgatc cctgattgca ttaaacctta tcacccattt cgacaagaac ttgtaatcca      3120
     aggcggaatc attctacgca acaatcgtgt agtgattcca actgctagcc gaaaaaaagt      3180
     atcagagatg ttacattaca atcatcaagg agagcaaggt actttgcgga aagctcgagg      3240
     attggtttat tggccaaata tgaacgatca tttacgaaat ctggtaaagg cctgcgacac      3300
     ctgtaatcaa ttcaagggat accagcagag tgaaccgatg caaacctgta agacagcgac      3360
     atacccgttc gagtttgttt ccctggatat tggagaaatt gcttgtggtg ataaaaagat      3420
     gctgatcctg gtaacggtgg accacttctc gaactttttt gaagtcagcg ttctcaacag      3480
     ccaagcaaca aaacaattga tcgactgtac aaagcagaca ttcagccgaa tgggaattcc      3540
     acgaaaagcc atcaccgatt ccgccaaaca attcctcagt gttgaatggc aaactttcat      3600
     gaagaattat ggagtcctgc attcaacaag tgcaccttac caccatgcat cgaacggaaa      3660
     ggctgaatcg gcgatcaaaa ttgccaaaaa tatcatcaaa aaggcgttac acgacggaaa      3720
     agattattgg ttggcgattc tggaatggag aaatacacct caagccgatg gttattcacc      3780
     ggcacagaaa atgatgggga gaaatcttcg aggactgtgg cctgctccca tcgatcaact      3840
     aaaggtgcaa ggagtggatt cggccaaagt tagtgatcag atagaagaga gaaaaatcaa      3900
     acccaaattc tatcacgatc gcaagtctca aacactgccg gcgctagtaa ggggacagga      3960
     tgtgtatgtt caactgaggc ctgaagcaac tccacgctgg accaaaggac gtgttgccga      4020
     tgttttaagt gaccgtgatt acaacataga agttaatggt agtatttatc gtcggaatcg      4080
     tgttcacatc aggcagtccg atggcatgac gctatcagca cgagaggaac acactgaaga      4140
     caactacctc agtttcgatg agcaagacct accagcagtc accagcacgc cgaaggcaaa      4200
     tgcgtctaca aaagcagaac ccagaggatc acgggagagc agtgaccatc gcaatagcag      4260
     cacaacgatc actgaaacct caacgtcaac acccgagtca acagcagtcg gtgaccgccc      4320
     tcaacgacat gtgcgtaaac cgctgagatt tgaagactat gttctcgatt actctgagtg      4380
     attatgtgag ctataaaaag aggaaga                                          4407
//
ID   Gypsy-550_AA-LTR repbase;    DNA;    INV; 100 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 25.10, Created)
DT   03-MAY-2019 (Rel. 25.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-550_;
KW   Gypsy-550_AA-I; Gypsy-550_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-100
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-100
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 20(10), 3174-3174 (2020).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 100 BP; 35 A; 14 C; 17 G; 34 T; 0 other;
     tgatatgata ttgattaaca cgaattggat ttgtactaat ttaaagtgta ataaaatctg        60
     gcatcacttg cgttactgat ctcgactaga aagcatatca                             100
//
ID   Gypsy-551_AA-I repbase;    DNA;    INV; 9781 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.04, Created)
DT   06-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-551_;
KW   Gypsy-551_AA-I; Gypsy-551_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-9781
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9781
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (06-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 9781 BP; 2828 A; 1787 C; 2367 G; 2799 T; 0 other;
     atggtgcgga aggtagcgac cctaacgctc ctgcccggtg agtttccgat gaaattgtgc        60
     aaatttgtaa tttaatgtga aaggaatttt caaagatggc gtcgcaattt tcacatgttg       120
     tctattcggc cacgactaca taataagtat tcggtattgg tgaacgtttt gttttatgaa       180
     tgtaatcgca gaacagtctg cacagttctt ggtgttcgtg tgggattgta ctcatttttc       240
     attttttttg tgcatgagaa gagaagaatg aacaaaatat ttgttttcgt aactgcgtcg       300
     tacctacttg gatttgaata gtcgttttag tgataacata atccatttca atcgactagc       360
     tgtgaagtaa ttattagctc cggaaaatgt aaacaggaaa gtgtgcattg gtccataggc       420
     gatcacaaag tcgtcgccta ttattcaact tttcagtcgt cgggcggttt gcctccactt       480
     aaactaccac gtagctgtcg tgtacgataa gcggattttt ttattattag tgtgtgtcgt       540
     acaacataca gcagcgcgac tattatggag tgtcaacaag acgacattga acgtactttt       600
     caacctttca gtcgtcgtgc attttgccag cacacagtcg tagtgtatga tcagcaaagt       660
     tttctaccag cgtttttcag aatacaacag cgcgactact ggagtgttaa aaaaaaacac       720
     gacattgaac gcactcttcc tctgtgcatc gattctgtgt tgctgtaacg tcaaattcag       780
     agaccgtcat tgtttagaaa atcagaatga tagcacgatt tgcaattgtt aaacggttta       840
     gtaatatttt aatataaaaa tagtgaattg tgtatttttt gtatcaagta tttattgttc       900
     atatttcgca aatcgagtgt agtgtatttc caggtaagat tctatccgat gtgtttccct       960
     atttctgatt ttatcctttc aacatcccat gtcattatca tgggctatag cagcaacggt      1020
     aggtgcaacc ggaacactga gcatcctctt catagtgcag aaaatgaagt tactgtccac      1080
     cgtttaccga aacagatagt acggcatccg ttcgaacgtt gcacttgctt tgaaaatatg      1140
     tgatagaaat accattcata gtgcacggtg ctatgtgtta ggtaaaacgg tataatacgc      1200
     accccaaggg aaaactgatg taggtacagc aacagcaaat gcatttaatc tcaaggtgtt      1260
     gttaaccatg ctctacatgc atcttttctt acaaggtagt ttcgaaaacg atccaagatg      1320
     ttttgcaaac ggcccttgaa aattaagttt agcgtattgc cccgttcggc atattactcc      1380
     tagttaccct aggtgatgtt agttgattgt atgaaaaaac atctggtgaa aattcagttt      1440
     taacgagtgt agggtaaacg gtcccttagt ggaggtagct ccgatagtgg aggtattgtg      1500
     ttttgacatt tttgcactaa taaacgatat tcttctaaga ttaatgatgc aaaaatggta      1560
     caagcattcg taaaacaccc atgagattta attgtaaagc tatttgaaac taacgatatg      1620
     gaattgtacc aatgattttg tgtaacgtat tttaggtgaa ctatttcata tcagctcgtt      1680
     gttcctcctg atatgaaagt caaggttcct gttcatgttt aacccataaa aggtcaaggg      1740
     tccatcgatt ctgacgagct attcttcaag gttatcaaac attcaatcgg gtgtatgtaa      1800
     caaacatatt ttcgcatttt aagaatacag aacatagttt ccattgacgc taattctata      1860
     tatgtgttac cgcaaatgat tttgtacgca ttgctgattt tttaaaagcg ttgaccaagt      1920
     ttttttgtta ttagaacgat aatggcaaag ctgcaaattt agtcatagga acttagaata      1980
     gattggagat ttaaatgaac cttgtgatat tgggaatata atccagctgt gaagttagct      2040
     agtcagtggt ttggagatac cacgggatct tgttaggttg atgaacatgc agcttaaaag      2100
     cgagctggtc actggtttaa aaggaacatt ggatttagtt gggatcgagg aaaatccagc      2160
     ttggagtgaa ttagtcagtg gtttgaaagt accactggac ctagttgggt cgaggcaaat      2220
     ccagattttg agtgaactgg tcgatggttt gaaggtacca ttggatctag tggggtcgac      2280
     gaaaatctag cttttgagtg agctggtcga tagtttgaag gtaccattgg acctagttgg      2340
     gtcgacgcaa atccagcttt tgagtgggct ggtcgatggt tctagttggg ttgaaggaaa      2400
     tctagctttt gagtgagctg gtcgatggtt tgaaggtacc attggaccta gttgagtcga      2460
     cgcaaatcca gctttggagt gagctggtcg gtggtttgga agtaccactg gacctagttg      2520
     ggtcgaggga aatccagatt ttgagtgaac tggtcgatgg tttgaaggta ccattggacc      2580
     tagttgggtc gaggcaaatc cagctttgga gtgagctggt cgatggtttg aaggtaccat      2640
     tggacctagt tgggtcgacg caaatccagc ttttgagtgg gctggtcggt ggtttggaag      2700
     taccactgga cctagttggg tcgagggaaa tccagatttt gagtgaactg gtcgatggtt      2760
     tgaaggtacc attggaccta gttgggtcga ggcaaatcca gctttggagt gagctggtcg      2820
     atggtttgaa ggtaccattg gacctagttg ggtcgacgca aatccagctt ttgagtgggc      2880
     tggtcggtgg tttggaagta ccactggacc tagttgggtc gagggaaatc cagattttga      2940
     gtgaactggt cgatggtttg aaggtaccat tggacctagt tgggtcgacg gaaatccagc      3000
     ttttgagtga gctggtcggt ggtttggaag taccactgga cctagttggg tcgagggaaa      3060
     tccagatttt gagtgaactg gtcgatggtt tgaaggtacc attggaccta gttgggtcga      3120
     ggcaaatcca gctttggagt gagctggtcg atggtttgaa ggtaccattg gacctagttg      3180
     ggtcgacgca aatccagctt ttgagtgggc tggtcgatgg gttgaagata ccattggacc      3240
     tagttgggtc gaaggaaatc tagcttttga gtgagctggt cgatggtttg aaggtaccat      3300
     tggacctagt tgagtcgacg caaatccagc tttggagtga gctggtcggt ggtttggaag      3360
     taccactggt cctagttggg tcgagggaaa tccagatttt gagtgagctg gtcgatgggt      3420
     tgaaggtacc attggaccta gttgggtcga ggcaaatcca gctttggagt gagctggtcg      3480
     atggtttgaa ggtaccattg gacctagttg ggtcgaggca aatccagctt tggagtgagc      3540
     tggtcgatgg tttgaaggta ccattggacc tagttgggtc gacgcaaatc cagcttttga      3600
     gtgagctggt cgatggtttg aaggtaccat tggacctagt tgagtcgacg caaatccagc      3660
     tttggagtga gctggtcggt ggtttggaag taccactggt cctagttggg tcgagggaaa      3720
     tccagatttt gagtgagctg gtcgatgggt tgaaggtacc attggaccta gttgggtcga      3780
     ggcaaatcca gattttgagt gagcttgtcg gtggcttaga agtaccactg gacctagttg      3840
     ggtcgaggga aatccagctt ttgagtgagc tggtcgatgg tttgaaggta ccattggaca      3900
     tagttgggtc gagggaaatc cagctttgaa gtgagctggt cggtgtgttg gaagtagcac      3960
     tggacctagt ttagtcgaga gaaattcagc ttgagtaagc tggtctatgg tttacaagta      4020
     tcactgagcc tagttctgtg gatgaaaatc tagtttatgt gcttcgatgc aaagacggtt      4080
     tattttcgac cacctcaaaa ataatgctaa gcgaaattta tgtcttacaa aactgcagtc      4140
     ttaaagaaag tatcaatatt gcattaatat gaagaggagt taataagtac ccttcatgaa      4200
     ttcattgaaa tagcttcata cgtatgcaat aattattgga attcagagtt gtgttgttta      4260
     tttgtctctc tctctctgta ttgttctagt tctgatgatc tcgatacgta cactcttgag      4320
     gacgctttgg aaatggaacg caagcgaaat gcattattat cttctaagtt gaagaaggct      4380
     aaggccaaaa acaaagagct gatgaattca aacatcatcg agtcgaatcc gagattatct      4440
     cgttttcagt ctacttttcg ggacgataca cggcaaaatg gagctgaatc actatcaacg      4500
     tcgatgaata atctttcatt tgcgtcactg aacatcgcag aatgtaaacc tgtggatggc      4560
     gaagatgaaa ttgacaggag gtcttttgag agctggcgtg aactgttgga agcctcgatg      4620
     caacttgttg gagtgaccga tgaaatcaca aaaatgagca ttttccgcat caaggcggga      4680
     ccaaaactcc ttgaggtatt ggaaaatacc ggttcttcgt caagaactcc aagttacgga      4740
     actacgcctt actcgaatgc tatgagtcgt ttaatggatt ttttcggctc gcgtgactat      4800
     acattgctcc atcgccaaaa gctacgttca ttgactcaag gcattgctga atccgatgtg      4860
     aagtatacaa agcgtgtaat caatcaagca aaactttgtg actacgacga actccagatg      4920
     ttagaaaatg ttgcagatgt tatccagtcg catgccttaa acttccgtat acgtgaaatt      4980
     ggaaggaaaa tgatgcgaaa gggaggatcg atttcggccc tattggaaaa ggtgcaggca      5040
     atcgagattg ctaaggtaaa tgaagagatg ttcgctaaat cacattcaac acaacaagtt      5100
     caggttgccg cggtatctgc gacgttttca aagcaattca atccagttaa tgcgacaaat      5160
     cagcaacccg agtatgatta ccattaccaa tcacaaaggc ccgaaaggaa tcagccaaga      5220
     tacaacaatc agcaagtcgt agcaccgcga ggaggatttc atcgtggatc atcagttcaa      5280
     gttaggcaga ctccgtgttg gcgttgcatg ggcagatacc acacagcttc gtcctgctca      5340
     gctatcgaca aaatctgccg cacctgccat cgaaaggggc atcttgcccg agcgtgcaac      5400
     caatcaaggg gaccacaaaa gcgtaaggta ccgatcgagg aaatcagcaa atcgacaggt      5460
     ccagcggcga agaagattgc attgctttcc aaggaagagc taccggaaga actcgacgta      5520
     agtctcaatg aataatttac ttatttctat tgaacacatc cctgtgaagt catgccttcg      5580
     ttaatcagta cttcgttaat gtttaaacct tgcaacatca cgacacactg tgttttgtca      5640
     cagggaccac tactaaccct tttttgttaa attgaattcg ttgttgaata aacaagttaa      5700
     gaaagttaca tttgcgctaa catcaattat atcagaaatg gcctaatagt gggaacttct      5760
     tacattgttc caggcaacag aggcttttgt caatgaagtg cctaaactgg aaccaatgac      5820
     tgatcacggg gcttatattc aaggacatgt tgcagggatg actattccat ttctgattga      5880
     ctcgggagca gatgtgaaca cgataaacgg agacatattt agagcaatga tgaacaacgt      5940
     acaatctcga gcagccatat ttgacgtgtc atctggtaca gacaaggtat tgaaagcata      6000
     cgcatctaat ggtagtgtag atgtccttgc taccttcgta gctgaactta cgataagcga      6060
     cgatcggcct atgctgatgg aaaagtttta tgctgtagat caggcaaagt cccttctgag      6120
     tagaggtact gcacttagat atagcgttct gcaagtagga ttaggtgttc cagttacaaa      6180
     tggaattgac atggaatccg gactcttagc tggagagatg tttactattt cgggagccac      6240
     ggagtttcct aaattcaata ttgcgccagt gtcactagcg tatgacaaaa ctaagcctcc      6300
     atcacgaaat atttacacca atataccgcc agcattcaaa caagaagcag aacgtagatt      6360
     agaagaattg ttgttagcag ggattattga accagttact gacaatatgg ataaatcgta      6420
     ttgttcctca ttgcttgttg ttccaaaagg aaaggacgac atcaggtttg tttctcagaa      6480
     atggctgtaa tagcttgagt taatttatat gatttttcca tagattggtt gtggatttaa      6540
     gaggtccaaa caaaaacatt atcagaaccc ctttcaaaat gccaactctg gaagcgatac      6600
     tggctaagct acacggtgcc acatattttt caacacttga tctttcaagc gcattcttcc      6660
     atgtcgtttt ggatgaagga tcacggcatc ttacgaactt cttcgcaggc gacgcaactt      6720
     acaggttcaa aagactgcca ttcggtctgt ccaacgctcc cgacattttc caagaggcat      6780
     gtcagacaat tattctctct ggatgccgag gagttgtcaa ttacttagac gacttcttga      6840
     tttttggaaa aaccaagaaa gagcatgatg aaaatttgga agaggtatta ctttgtcact      6900
     tgagttttta cttatgatca tgctaacatg tttttccttc catggtttac aattaggtgc      6960
     ttcgtcgtct tcgcgagcat aatgttagtc tcaataacga taaatgtgtg ttcggtaaga      7020
     cgtcagtaaa gttcgtggga ttcactatga ccagtgatgg tctaatgatt gaacaggata      7080
     aactgaaagc tattaagaac ttccgtcgac cgcagacgca agctgaggta aaaagctttt      7140
     tagggctgat caattttata gagcgtttta tcatcaatcg agcagataaa acagagaaac      7200
     tgagagaact tgcaaagtca gatgccttct attggaccga tggagaggag caagagtttc      7260
     agctgctgaa ggatgattcc ctgactactg tgctcaaatt gggttatttt tctagcgacg      7320
     acgaaacaga tgtctttgta gacgcttcgc ccattggtct aggcggagtt cttgtgcaat      7380
     atgacaagga tggcaagccc agaataatct cttgtgcttc aaaggccttg acggaatcag      7440
     aaagaaaata tcctcagact caaaaggagg cattggccat tgtgtgggga gtagagcgat      7500
     ttgcgttcta tttgacaagc aaatcatttg cgataaggac ggattccgag gcaaatgagt      7560
     tcatcttcgg aaagggaaga aaaaccagta agcgcgcaat ctctagggct gaagcgtggg      7620
     cgttgaggct tcaaccttat gacttcatcg tcaagagagt tcccggccat ctgaacgtgg      7680
     cagatgtgct ttcaaggcta ataagcaaaa cacaaaacga tgctcctttt gatgaaacgg      7740
     atgagaagca tgtactttac gctctggacg ctggctcggt ggatattacg tggagcgata      7800
     tcgagagcgc atcagaaatt gacgacgaat tgtcacaggt tcgagatgct atcaattccg      7860
     atatttggtc agatcggcta cgccgatacg aaccacatcg tagtagtttg cgttgtgtgg      7920
     gatcgacgat attcaaagac gataaggtga tactcccaaa aagacttcgt gacaaggcat      7980
     tggaggcagc ccatcaaggt catctaggta tttctgctat gaaacggatt attcgcgaat      8040
     atttctggtg gcctgacgtc agctctacag ttgaaacatt tgtgaagaat tgtcggactt      8100
     gtttgcttat ctccagaaaa aatcctccaa ttccactttc gagccgtatt ctaccggacg      8160
     ggccttggga aatcctccaa attgattttc tgacggttcg cggatgtggt actggagagt      8220
     tcttaatcgt ggttgatacc tattccagat atctatctgt cgtggaagtt agatcaattg      8280
     acgctaaaat cactacagct gctctttcaa aagtatttga aacatggggg cttccgatga      8340
     tcattcagag cgacaacggt ccgccgtttt tcagtagaga atttattgag cattgggaac      8400
     aaaagggagt gcgagtacga aaatcaatcc ctctgagcgc tcaatccaac ggggctgtag      8460
     agcgtcagaa ccaaggggtt ctgaaagccc ttgctgggag caaagaagac ggatgcaact      8520
     ggcgaagcgc acttgaacgg tatgttcacg tccataacac gattaagcca cattctaggc      8580
     tgggagtcac accgttcgag cttctcgtcg gttggaaata ccgtggctcg tttccggcgc      8640
     tgtgggagtc gaaagcaagt aaggagttgg accgctacga tgttcaagaa aaggatgccc      8700
     tggcaaaatt agtcagcaaa agctacgcag accaacgacg aggtgccaaa ccatctgata      8760
     tcaaagcagg tgataaagtc gtagttgcga tatcacgcaa aaacaaaact gatccgctat      8820
     tttcgaaaga gagatatacg gtgcttattc gtgacggagc caaagttgtg attcgtagcg      8880
     atcgaggaat acaatatgct cgaaacgttc aagacgtcaa gcgagtacca gagtttgcga      8940
     taggggaaaa ggaagatcct gatggccgaa gttccaacgc cgaggaagct gaagggatta      9000
     cagaaggtgc atctttttca gcattaggaa gtgatcagat cagccatggt ggtgttgagc      9060
     aaggggttaa gaattctatt cctgaagctg gaaacaatca ggaatcggtc gtggtccaag      9120
     ggcagggtac tgctgtgatt aatacacggc ctaaaagaag tcttagaaaa cctgaaaaat      9180
     tcaaggatat gtttgtttat catatttttc agtaatttca tataacaaat tccttcaaaa      9240
     ttgctatacg attgaatatc catacatgta taagaggttt ctcgaaactg taataactct      9300
     aagctaaata gaaaactatt tttcatagta atacagaaaa aaaggataaa ttcaaatcaa      9360
     taaatgttcg attcaacgat aattataagc gttttgttta caatgaaaaa ttacgaaacc      9420
     tcaagcattt tcatcataat atctgactct aaatctacat ttcgacattt tctcctcacg      9480
     tgtatcctca aaactttaca tgctagaagc acgcgtccaa aagaaattct gattgattaa      9540
     ataagtttgt ttacttttct gacttacggc tgttttaatg agtttaaaaa aaaaaaataa      9600
     aagaaaactt aatatggaaa aagtggatga aaacaacatt gaccaattac caataaatat      9660
     acatatagta attatagtaa aattatatac aaaaatcatg ttgctggtaa gacttgcgac      9720
     tacaattccc attggttgct cacttatgtg cattaagctt aagagtagag gtggaggtga      9780
     a                                                                      9781
//
ID   Gypsy-551_AA-LTR repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.04, Created)
DT   06-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-551_;
KW   Gypsy-551_AA-I; Gypsy-551_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-345
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-345
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2121-2121 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 345 BP; 111 A; 65 C; 86 G; 83 T; 0 other;
     tgtagaagat gagccgtaga ataaatatag tgccttgtta taaattactt caatgcatta        60
     catatacaca tgttgtagaa aatctattat accaaaacac ttttatagct catagcggcg       120
     aacctcttgt gagaacgaga gactagagag cgagagagcc ggaatgctcg agtcgagctc       180
     tcgttaaatg agtggaagtc agtcttaaaa tcgattcgcg tgaaggcggt tgtatcgctc       240
     tgagtcgtca cggaggaacg aaaatgataa ggcggaacta taatccggat catcgaacgg       300
     agcaatccgt tgatcccggc ctagaagagg tcggaattca cgaca                       345
//
ID   Gypsy-552_AA-I repbase;    DNA;    INV; 6323 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.04, Created)
DT   06-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-552_;
KW   Gypsy-552_AA-I; Gypsy-552_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6323
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6323
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (06-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1238..1531,1465..2223,2136..2417,2393..2887,
FT                 2883..3170,3097..4719,4712..5755)
FT                 /product="Gypsy-552_AA-I_1p"
FT                 /translation="SINQIKGYKNGFHIEIIKIITALVPTYDGNGEKLASV
FT                 VGALNACKSLINEANKEVAINTILSRLEGKARLAIDNLDLKVKLDQQLIIF
FT                 PKTWKKSYENLEGKARSAIDNIPQNVEEIIRKLNDKCKGTTTPETVVAKMN
FT                 ATKQIGEITKFTQEIEKLTTELERAYINEQVPVDTASRMAVKAGVKALVSS
FT                 VRNDETKLLLKAGQFTSLASAIEKINEYEPQTSTKIFHIRSTDHKFSRYEN
FT                 GPSRGNGRGNFNGHTNYRGHRHFTGRGNFRGQNRFQRGFYHNQSRGNNRSY
FT                 YNNFPRFYYNSVNPQAAQAGQVPFTNQQSELGFHQPTQFQQQQQQSTNQIP
FT                 ISQLVSRRVGVSSTHPIPTTTATINQSNSNFTTSISKVNKIFAVHASYSNF
FT                 VTLKLAASKTHSTFLIDSGAEISLIKHININSNEIKHININSNETKITNVV
FT                 RNQNNKCSIAGIDSHTIGTLGTISIFIQLPIGTKLPQNFQVLPEDIPIPTD
FT                 GILGRDFLVKFKCIIDYNTWILTGTNDSEPFELIIEDNLRGDLVLPPRCEV
FT                 YRQINTQNINGESLVTSQEIKPGVFCANAIINTENPIIKFINTTNKPIAIQ
FT                 NTIPNGLKPLKDRIKIFSHLIRMWTQKNERINIPFEELNLNKTITDTQVRD
FT                 KLATLCAKYNDIFALQTDTLTHNNFSKQKINLNDKSPVYIKKLQKSRSTQT
FT                 GNRQSSTTKVLFILKNYRSPEVHKQEIDNQVKKLLNDGIIQHSISPYNSPL
FT                 LLVPKKSTNSDKKWRLVVDFRQLNKKIIADKFPLPRIDEILDQLGRAKYFT
FT                 TLDLASGFHQIELEKISKKYTAFSTTSGHFEFCRLPFGLNISPNSFQRMMT
FT                 IALSGLPPECAFLYIDDIIVIGCSINHHLSNLETVFKALRKYNLKLNPNKC
FT                 HFFCPDVTYLGHHISDQGIQPDKSKYSTILNYPEPKNADDVRRFVAFANYY
FT                 RRFIPYFSDIAAPLNALLKKNSKLEWSPECKKSFKQLKQKLLSPVILKFPD
FT                 FTKQFILYTDASKIACGAVLTQKHGDIEMPIAYASKTFTKGEKNKSTIEQE
FT                 LTAIHWAITHYRPYLCGRRFIVKTDHRPLVYLFSMKNPSSRLAQMRLELEE
FT                 YTFNIEYVKGKENVSADALSRITIDSDELKTIPCLPIQTRSMTKIQKNKTN
FT                 IDSSATEIDHLRAYDSVNTLDAFKVPKITFELINQYTIIRILSKNLKMLIS
FT                 QVNLACQNGGTDLTYYLQIINEMALKSNIKTLAIKKQKNNDKLFSFIPQEV
FT                 FKQACNRILSDVTIIIYEPTKIITDDETIQRIISENHNTPTGGHIGICRLL
FT                 NKLRSKYYWNNMKRTITEYVKQCNKCIQNKHRPKTNEIFIETTTPSKCFDI
FT                 IAIDTIGPITKSNLGNRYALTIQCDLSKYIIAVPIPDKQAATLAKALMEHC
FT                 ILIYGCPIQIKSDLGTEYKNEIFRTMCKLLNIEHKFSTAYHPQTIGSLERN
FT                 HRCLNEYLRHFINDQQDDWDNWLIYYTFTYNNTPHSEHLFTPFELIFGKQA
FT                 RLPTHFSETVIVDPIYNHESYVTELKYKLQLINNKARLMSEKAKQNRSLVQ
FT                 SKQSKPIQITIGDKVWLRNENRRKLDKV"
XX
SQ   Sequence 6323 BP; 2546 A; 1118 C; 1007 G; 1652 T; 0 other;
     tggcgagccg ttcaggttaa acttagttga atgaagttac gcgttttacg ccggttaaaa        60
     cgacaagtta ccgcgatgtg aacccgcgca gtgatcagtg caagtaaaat gtgtagacta       120
     aacgatgatc gctaaaggaa aaaggcaaat agtgttttac tgaaaatggc acttagatca       180
     atgcaacaag tgctagtgca attagatgaa atgatctcta ccaaacgacc aacgaacttt       240
     ccagtgagct ataatatagt taatttactg aacctattag aaatagaacg attggtacaa       300
     atagtggatc gaaatgatgt cgaagtgaag gtgaaaccat cagaagaagc aagtaaattc       360
     gaaccaataa tttcagtgtt atcagtgaga agcagagaat tacatgcaca tgtgctaaaa       420
     ataatgccaa ctataacagg cagattgttg gtgacaacca gtcagggcat aatgacacac       480
     ttcgaagcac aagaaaataa attaggtgga caaataatag gtttcgcatt ctaaatttga       540
     aaaaaaaact aaataagtga aaatgggaaa cgaaaaatca tcaccagaag tgaaaaatag       600
     tggtgatcat gacctaacag tcatcaatac ccaagaagtg catactgaca tgcacttaag       660
     ccatgacata aaactgaaca ttgttatcgg gttagtgaca gtgcaactag cgctagtaat       720
     atataagcta ctagtgaaaa gagaaagaag acgggctaac aaactttctg ccaaatcatt       780
     ggccaatttg accgaagtgg ttacaaagtg atccagctga agcggaaaac tggggaaact       840
     ggcaccgaag cggcttcgag gactgaatga aacaacggaa cagcatcgtg gagtgagtcg       900
     gtgagtcaaa aaacaaacac atggaagttg aggccgaact caacaactat attgaaaatt       960
     tagtcaaaat caaaacgaat tttgtaaaaa acccatatag aaaatttcta cataatactc      1020
     taataaccaa gaaaacctat gtacgaaact tatatgagac aatattagaa aaacttcaag      1080
     aacacgaaac agctttagaa tatagcaagt ttaatatttt tgtgaaaact agtagaagct      1140
     tagtagatga aataaataga attattgacc taaaatgacg cactgcaaag aaaggtctaa      1200
     gtttgaaaaa tttagctcaa tcaataatat tctgtaatcg attaaccaaa ttaaaggata      1260
     caaaaatggc ttccatatcg aaataattaa aataattaca gcgcttgtac caacttacga      1320
     tggtaatggt gaaaaattag caagtgtagt tggagcgttg aatgcttgta aatcactaat      1380
     taatgaggca aacaaagaag tggctattaa tactatatta tcaagacttg aaggtaaagc      1440
     tagattagca attgataatc ttgacttgaa ggtaaagcta gatcagcaat tgataatatt      1500
     ccccaaaacg tggaagaaat catacgaaaa ttgaacgaca agtgtaaagg cacaacaact      1560
     cccgaaactg ttgtggctaa aatgaacgcc acaaaacaaa ttggcgaaat tacaaaattt      1620
     actcaggaaa tcgaaaagct tactactgag ctagaacgag cttacataaa tgagcaagtt      1680
     ccagttgata cggcttcaag aatggcagtc aaagcaggag taaaggctct cgtatcaagt      1740
     gttcgaaacg acgaaacaaa gttattgttg aaagccggac aatttacttc cctggcatca      1800
     gcaatagaaa aaataaatga atacgaacca caaacatcca ccaaaatatt tcatattcgt      1860
     tcaacagacc acaaattctc tagatatgag aatggtccgt ccagaggaaa tggacgtggc      1920
     aacttcaatg gccatacaaa ttacaggggc cacagacatt tcacaggtcg aggaaacttc      1980
     agagggcaaa acagattcca acgaggcttt taccacaatc aatccagagg caataacaga      2040
     agttattaca ataactttcc aagattttac tacaactcag tgaatccaca agcagcgcaa      2100
     gctggacaag taccatttac gaatcaacaa agtgagttgg ggtttcatca acccacccaa      2160
     ttccaacaac aacagcaaca atcaaccaat caaattccaa tttcacaact agtatctcga      2220
     aggtaaacaa aatatttgca gtacatgcat cgtacagtaa tttcgtaacg ctaaaactag      2280
     ccgcatcaaa aacacacagt acatttttaa ttgactctgg cgcagaaata tctttgatca      2340
     aacatataaa cattaactct aacgaaatca aacatataaa cattaactct aacgaaacca      2400
     aaataacaaa tgtagtatag caggaattga ttcgcatact atcggaactc taggcaccat      2460
     atctattttt atacaattgc ctattggaac taaattacca caaaactttc aagtactacc      2520
     agaagacata cctataccaa cagatggaat tttgggtcgt gattttctgg tcaaattcaa      2580
     atgtattatt gattataaca catggatttt aaccggaact aatgactcag aaccattcga      2640
     attaattatt gaggataatt tgagaggtga ccttgtttta cctccacgtt gtgaagttta      2700
     tcgacaaatc aacacacaaa acatcaacgg tgaatcttta gttacatccc aagaaatcaa      2760
     gccaggagtt ttctgcgcta atgcgattat aaatacagaa aatccgataa tcaaatttat      2820
     aaatacaaca aataaaccga ttgcaattca aaatactatc ccaaatggtc tgaaaccatt      2880
     aaaggattaa gatattttca catttaatca gaatgtggac acaaaaaaat gaaagaatta      2940
     atataccctt tgaggaattg aatttaaaca aaacgattac cgatactcaa gtcagagata      3000
     aattagctac actatgtgca aaatacaacg atatttttgc attacaaacc gatactttga      3060
     cacacaacaa cttttctaaa cagaaaataa atctaaacga caaaagtcct gtttatatta      3120
     aaaaactaca gaagtccaga agtacacaaa caggaaatag acaatcaagt taaaaaacta      3180
     ttgaatgacg gtattattca gcactccatt tcaccttata attctccact ccttctagtg      3240
     ccgaagaagt caacaaattc tgataaaaaa tggcgtttag ttgtcgattt tagacaactg      3300
     aacaagaaaa ttattgccga taaatttcct cttccaagga tagacgaaat tcttgatcag      3360
     ctgggaagag ctaagtattt taccacactc gacttagcat cgggatttca tcaaattgaa      3420
     ctggaaaaaa tatcaaaaaa atatacagca ttttcgacaa cgtctggtca ttttgaattt      3480
     tgtaggttac catttggtct aaacatttct cctaacagct tccaaaggat gatgactata      3540
     gctttgagtg gtcttccgcc ggaatgcgct ttcctttaca tcgatgatat tatcgttatt      3600
     ggatgttcga taaatcatca cttatcaaat ttggaaacag tttttaaagc attacgaaaa      3660
     tataatttga aacttaaccc taataaatgt cattttttct gtcctgatgt cacatatctc      3720
     ggacaccata tctcagatca aggaatccag ccagacaaat caaaatattc cactatttta      3780
     aactatccag aaccgaaaaa cgcagacgac gttagaagat tcgttgcgtt cgcaaattac      3840
     taccgacgat ttatacccta tttttcagat attgcagcac cattaaatgc attgctaaag      3900
     aaaaattcaa aattagaatg gagtccagaa tgcaaaaaat cattcaaaca attaaaacaa      3960
     aaacttttat cacctgtcat actcaaattc ccagatttca caaaacaatt tattctttac      4020
     acggacgcat caaaaattgc atgtggcgct gtccttacac aaaagcacgg tgatattgaa      4080
     atgccaatag cctatgcgag taaaaccttt actaaaggtg aaaaaaataa atcgaccatt      4140
     gaacaggaat taacagccat tcattgggcg attacccatt atagaccata tttatgcggt      4200
     agacgattta tcgtgaaaac tgatcatcgt ccacttgtat atttgttctc gatgaaaaat      4260
     ccatcttcga gattagcaca aatgagacta gaactagaag agtatacatt caatatagaa      4320
     tacgtgaaag gcaaagaaaa tgtcagcgct gacgctctat cgcgtattac tattgattca      4380
     gatgaactca aaacaatacc atgcctccca attcaaacaa gatctatgac gaaaatacaa      4440
     aagaataaaa cgaatattga ttcatcagca actgagattg atcacctcag agcttatgat      4500
     tcagtaaata ccttagatgc atttaaagta cctaagataa catttgaatt gataaaccaa      4560
     tatacaatca tacgaatttt atctaaaaac ctgaaaatgc ttatttcaca agtgaattta      4620
     gcttgtcaaa atggtggaac tgatttaaca tattatctgc agataataaa tgaaatggct      4680
     ctaaagtcaa atatcaaaac gctagcaata aaaaaacaat gacaaattat tcagttttat      4740
     accacaagag gtatttaaac aagcatgcaa cagaatattg agtgacgtca caattataat      4800
     atatgagccg actaaaatta ttacggacga tgaaacaatt caacgaataa tctctgaaaa      4860
     ccataatacg cctacgggtg gtcatattgg tatatgcaga ttacttaata aacttagatc      4920
     caaatactac tggaataata tgaaaaggac tattacagaa tacgtaaaac agtgcaacaa      4980
     atgtattcaa aataaacatc gacctaaaac caatgaaata ttcatcgaaa caacaacccc      5040
     gagtaagtgt tttgacataa ttgctataga cactatcgga cctataacaa aatcaaactt      5100
     aggaaacaga tacgccttga ccattcaatg cgatctgtca aaatatatta ttgccgtacc      5160
     aataccagac aaacaagcag cgacattggc aaaagcttta atggaacatt gtattcttat      5220
     atacggatgc ccaatacaaa tcaaatctga tttaggcacc gaatataaga atgaaatatt      5280
     cagaactatg tgtaaattac taaacataga acataaattc tcgacagcct atcatcctca      5340
     aaccataggc agtctggaaa gaaatcaccg ctgtcttaat gaatatctaa ggcattttat      5400
     taatgatcag caagatgatt gggacaattg gttgatctac tataccttta cttataataa      5460
     cacacctcat tcggaacatc tgttcacacc tttcgaacta atttttggga aacaagccag      5520
     attaccaaca cacttttcag aaacagttat cgtagaccca atttacaatc atgaatcata      5580
     tgtaacggaa ttaaaataca aattgcaatt gattaacaac aaggcgagat taatgtctga      5640
     aaaagccaaa caaaatagat ctcttgtaca gtcaaaacaa tcgaaaccaa tacaaattac      5700
     aataggagat aaagtttggt taagaaatga aaatagaaga aaattagaca aagtttagtc      5760
     aggtccgttt gaaattatca gtgaagatca tccaaatgtc agaatcaaaa attttactaa      5820
     tgaagaaacc caaatagtac ataaaaatag actaataaaa gtataaaaaa agaagatcat      5880
     ccaaatgtca gaatcaaaaa ttttactaat gaagaaaccc aaatagtaca taaaaataga      5940
     ctaataaaag tataaaaaaa ataatgtaaa acgtactcta tgcataaaat caaaaaataa      6000
     atgtttttca aaacttgcac acatattagt gatgaacaat gtaactgtaa acctagataa      6060
     taaatccgag cctaatctct aaaaaaaata atgaacaaga aaaaataagt gaaaaaagag      6120
     ataggtcaaa agtctaacct ttaggttaga cgtgagaaat tcagcattag ctattaatta      6180
     gtaatacatt attattagta atattatgaa ttgattaact tgaatttaaa agaaaagaga      6240
     caattggatg tacgaaatat tatacaaaat tagctacatt ccaattcaat tcattacgct      6300
     aattttttcc aaaaaaggga agg                                              6323
//
ID   Gypsy-552_AA-LTR repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.04, Created)
DT   06-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-552_;
KW   Gypsy-552_AA-I; Gypsy-552_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-498
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-498
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2122-2122 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 498 BP; 171 A; 123 C; 74 G; 130 T; 0 other;
     tgttacgtga atacctatca cccaacaatt caagtcataa acaaatcaaa gtaagtcatt        60
     aactccaaac aagaaacgtt gtagatcaag ttacacaaaa cagaatagca accatatgca       120
     ccataagcta tacgcaccga ggctactgca ctcgagtctt cccctattcc tttttccacc       180
     catatgcaaa tgactttaca ttgcgcatat cgggttggac caccaaggca cccaaattgc       240
     cgaccttgcg aagatgcaca aattgttcgt tttgcaatcc agttgtctca ttctaactca       300
     tatgcaatat agtataaccc aaatattgtc agacctatat aaactcaaat gatcgaaata       360
     caaatcaatg tttgactagc aatcaactgt gtaagatcag tctctactgg tgactacttt       420
     cgtagctcac catagtaggg atactgaact aaaagaaaag tccttctcca aacgtgtccg       480
     cgttacaaac ctgcaaca                                                     498
//
ID   Gypsy-553_AA-I repbase;    DNA;    INV; 5905 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-553_;
KW   Gypsy-553_AA-I; Gypsy-553_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5905
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5905
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(957..1490,1408..2094,2084..3124,3097..5616)
FT                 /product="Gypsy-553_AA-I_1p"
FT                 /translation="KNNPHRSYLQATLVKKQIYCDQIFKRAENLLEELIYK
FT                 IPTEEFLYYQNKLQTVNEDLNKLLWEKLKLLEMTTRLDLGIALKLVEKFNG
FT                 EAEKLTSCFEAVDLLKDHYSNVPEADLLKFFKTRLIGPAHGVINGAATLAE
FT                 AKTLLKNKFAIKFSPQAIESEMASIKQKKVVPFGIWATNNFRPKLSNQRWQ
FT                 ASNKKKLSLSEYGQQINELAAKLAAAHVSKGTFADEAAADAIVQPIAVKTF
FT                 MNGLRDPKAQFFLKARNPNTLTKAISDALEVNTDDSESVMWMSAGPSRGLQ
FT                 YPRYQYQNNYSRGYQGNRGYRGNRNFHGRSRGYYQNQNQQYQPQMSNSQQG
FT                 RGYRGNNRGGRYNNNHNNRPHTANVAEQTQEEPRQSTSQQPQNRQPVNRQQ
FT                 NQAEEANLIDLFRIFFANFSVKKALRAKFKLFSKNLELIVDSGASCCLLDK
FT                 KYVPKNLRTNTSSTIEVRGVNGITHTLGYVDTTLDHELAEYPIRFHIMEQL
FT                 PSNVIGLIGTNFLKQFGAKIDFAKMKMEFIIQNGELNLTIPPRYEYITYIE
FT                 MELAETCVVQPNVFVANSIANPVNGKIPVRLVNISNKPVVIKDVKPKITLA
FT                 ENYNVIELKNDGQKYDKIRASKLLEELKLNHLSGSDEKAIKQICLKYSDIF
FT                 CLKGDKLGTTNVYCPSLTVKPNIQPAFSKPYRLPFSQKKEVCKQVENMLKD
FT                 GIIEETKSEWNSPLLLVPKKSDNDSKNWRLVIDYRKVNTNLQDDKFPLPNI
FT                 LRKIPIAQYIEEVIDSLAGSQYFTHLDLSQGYYQCELKPEDRPITAFATPS
FT                 GQYQMTRLPMGLKTSPSSFSRLMTVAMSGLNLTKCLIYLDDIIVFGITFDE
FT                 HNKNLISVFQRLREVNLKLNPAKCNFLKQELIYLGHFISKEGVLPDPQKIE
FT                 TIKNWKSPSSSDEVKRFVAFANYYRKHIRNFASLCLPLNYLTGKGIEFNWS
FT                 EECETAFQQLKERFIKPPVLDYPDFIEKNTFKLHTDASGYGIGAVLSNKND
FT                 KPISFASKGLNSAEKNYSTIEKELLAIVWAIQHFRVYLYGRKFELYTDHKP
FT                 LVYLFTLTDPSSRLTKFRLALEEYNFEVFYKKGCENAVADALSRISTTELR
FT                 DMHEKLSNEAFVTTRMQAKKKNTNSTKEVINGHDASSRKIVQLIIKTNNFS
FT                 DNVTWIPEREEIIIKPTDTLESLRRTREELGSICKKYSVEELYIRINDDCA
FT                 HKFYENIMQNDLAERVPSILKISDKVKVITDDTTKKLILNDYHILPTAGHA
FT                 GIKRIINTIRQKYYWKGINQDVAKFIKSCKKCQKFKSINVAKPPMIVTTTA
FT                 ESAFDKIYLDLVGPLIPSDGYEYILTTQCELTKFITATPIKNKTTETVAEA
FT                 FVKSVILKYGVPNRIASDRGTEFMSDLFSSVAKLLNIEKLNSTAYHHQTIG
FT                 ALENSHKCLGNFLRIQCDNKLFSWSSWIPYYEFAYNNTVHSTTNYTPFYLV
FT                 FGKHSKMPSNLAEATPEPVYNIDDYSKQMKTKLQICHKEVQDRLIQEKTKR
FT                 TGEINKTAKQKMYSNGDLVWVKNETGKKLEAKFNGPYEILEDLEPNVKILI
FT                 KDKEDIVHKSRIKPFIRRVVDEELEEE"
XX
SQ   Sequence 5905 BP; 2137 A; 984 C; 1190 G; 1594 T; 0 other;
     tggcgatcct gccaattcgt cttggagatc cgtaaacagt tgttcaaaac cgtgcaaatt        60
     cgtgccgtaa agtaaatcgt acaactaagc cagtgttaag cgttttcggt aaatgagtga       120
     taattattga cagtaattac ctgaaacaaa ttcggtcatg gggtggttta gtgcagatga       180
     aataatcgca cccaccacaa gtgtcgcaca gaagagcgaa ggccatcata cagcgcaaac       240
     gattgcactg tgttcattgg ctgtggctgc tgtgggctac attttgttcc gcggttttgc       300
     caaaattcag cgccaacaca cggaacgtgt ggcggaacaa gcggcgcgac gagcagctgc       360
     acaagtttaa tgcgcaagtg tgacgaagaa cagaactgag gagatgaaca tatgataaaa       420
     cattggaaaa aaactgaatc atttggtgta caatggctga gagaagaaca ttggaagagg       480
     aacaattaaa acagtgtaaa caattcttct tccgcgaggg tcagtattgg gacaggttgc       540
     tggcaaagag aattacatgt acagcagagg aattatcagc caagatggaa attgttgaag       600
     cagtgttcag cgtagcagcg agattagccg tcagatcaac caatcccgag gagatgcaag       660
     aggaccttct atttcaccat cgagaactac aaatggccat tgaacaatac cgacaagtga       720
     tggatttgta aacccgggaa gtatcaaaag tagttatgag tagctaaaat atactaaaca       780
     gcgtgtttta ttttaggtac gacacattta ccaccacgcc gtaaaaggta caaaaggtaa       840
     gtgcgttttg tgctgttttc tgtgtttgaa atggtatttt ggtgtgtagt tttgaatgga       900
     catattaaaa atacaagaac tcattgggtt tcttgtagta aatttgagta atttaaaaaa       960
     ataatccaca taggagttat ttgcaagcaa ctttagtgaa aaaacaaata tattgtgatc      1020
     aaatttttaa aagggcagaa aatttgttgg aagagttaat atacaaaatt cctacggaag      1080
     aatttttgta ttaccagaat aagttgcaaa ctgtgaacga ggatttaaat aaattattgt      1140
     gggaaaaatt aaaattattg gaaatgacga cgaggctaga tttagggata gccctaaaac      1200
     tagtggagaa atttaatggt gaagcggaga agttgaccag ctgttttgag gcagttgatt      1260
     tgcttaagga tcattattcg aatgtgccgg aggcagatct gctcaaattt ttcaaaacac      1320
     gattgattgg acccgcacat ggggtaatca atggtgctgc aaccctagca gaggcgaaga      1380
     cgttgttgaa gaacaaattc gccataaaat tttcgcccca agctatcgaa tcagagatgg      1440
     caagcatcaa acaaaaaaaa gttgtccctt tcggaatatg ggcaacaaat taatgagcta      1500
     gcagctaaac ttgctgcagc tcatgtctca aagggaacat ttgcagatga ggcagcggcg      1560
     gacgccatag tgcagccgat tgccgtaaaa actttcatga atggattacg agatccaaaa      1620
     gcacaatttt tcttgaaagc gagaaatcca aatacactga caaaggcaat aagtgatgcc      1680
     ttggaagtga atacggatga ctcggagagt gtaatgtgga tgtctgcagg cccttcaaga      1740
     ggtttgcagt acccacgata ccagtaccag aacaattata gtaggggtta ccaaggcaac      1800
     agaggttacc gtggcaaccg gaattttcac gggagaagta gaggttacta tcagaatcag      1860
     aaccagcaat accagcccca aatgagcaat tcgcaacaag gtcgagggta tcgcggaaac      1920
     aataggggtg gtcgttataa caacaaccac aacaatcggc cccatactgc aaatgtggct      1980
     gaacagactc aagaggaacc tcgtcagtca acatctcagc aacctcaaaa ccgtcaacct      2040
     gtaaaccgac aacaaaatca agcagaagaa gcaaatctga tagatctttt tcgctaattt      2100
     cagtgtgaaa aaggctctac gggctaaatt taaattattc agtaagaatt tagaattgat      2160
     agtagacagc ggagcatcct gctgtctact agacaagaag tatgttccga aaaatttaag      2220
     aacaaacaca tcatcaacca ttgaagtcag aggagtaaat ggaattacac acacattggg      2280
     atatgtggat acaactttag atcatgagtt ggcagagtat cctataagat ttcacattat      2340
     ggaacagtta ccatcgaacg ttattggttt gattggtaca aactttttga aacaatttgg      2400
     agcaaaaatt gattttgcaa aaatgaaaat ggaattcatt attcagaatg gagaattaaa      2460
     tctaacaata ccaccaaggt atgaatacat tacatacata gaaatggaat tagccgaaac      2520
     atgcgtggtt caaccaaatg tgtttgtggc taattctata gcaaatcccg tgaatggtaa      2580
     aataccagtg cggttggtga atatttcaaa taaaccagtt gttattaaag atgtgaaacc      2640
     aaagataaca ttagctgaaa actacaatgt tatcgaattg aaaaatgatg gtcaaaaata      2700
     tgataaaatt cgagcgagca aattattgga agaattaaaa ttaaatcact tatctggtag      2760
     tgatgaaaaa gctattaaac aaatttgctt gaaatattcc gatatatttt gtttgaaagg      2820
     cgataagctt ggtaccacca atgtttattg cccgtcatta acagtcaagc caaacatcca      2880
     accagcattt agtaaacctt acaggcttcc tttctctcag aaaaaagaag tctgcaaaca      2940
     ggtggaaaat atgctcaaag atggtatcat tgaagaaacc aaatctgagt ggaacagtcc      3000
     cttattgcta gttcccaaaa aatcagacaa tgattcaaag aattggagat tagttattga      3060
     ctataggaaa gtcaatacaa atcttcaaga cgataaattc ccattgccca atatattgag      3120
     gaagtaatcg attccctcgc aggttctcaa tattttactc atttggatct gtcacaaggt      3180
     tattaccagt gtgaattaaa accggaggac agacccatta cagcgtttgc gacgccatcc      3240
     ggtcagtatc aaatgaccag gctaccgatg ggattaaaga caagcccatc atccttttct      3300
     cgattaatga cagtggcaat gtcaggatta aatttaacta aatgtttaat ttacctcgat      3360
     gatattattg tgttcgggat aacatttgac gaacacaata agaatttgat ttctgttttt      3420
     cagcgactac gagaagtcaa tttgaaactc aaccccgcta aatgtaattt cttgaagcag      3480
     gagttgatat atttaggaca ttttatttca aaggaaggtg tactacctga tccacagaaa      3540
     attgaaacta ttaaaaattg gaagagtcct tcatcctctg atgaagttaa gagatttgta      3600
     gcttttgcga attactacag gaagcatata cgaaattttg ctagtttgtg tttaccatta      3660
     aattatttga ctggaaaagg aatagaattc aattggagtg aagaatgtga aactgcattt      3720
     caacaattga aagagcggtt catcaaaccc cctgtgttag attatccaga ttttatcgag      3780
     aaaaacacat ttaaactaca cactgacgca tctggttacg gaatcggtgc agtattaagc      3840
     aacaaaaatg ataaacccat atcttttgcc agcaagggtt taaatagtgc tgagaaaaat      3900
     tattcaacaa tcgaaaaaga actgttggcc atagtctggg caattcaaca ttttcgtgtt      3960
     tatttatatg gacgaaaatt tgagttgtat accgatcata aacctttagt ttaccttttc      4020
     actttaacgg atccttcgag tcggttgacg aaatttcgtc tggctctcga agaatacaat      4080
     tttgaagtct tctacaagaa aggttgtgaa aacgccgtgg cggacgcgct atcacgtatt      4140
     tcaacaaccg aattgagaga catgcacgaa aaactcagca atgaggcatt cgtaacaacc      4200
     cgaatgcagg cgaagaagaa aaatactaat tctactaaag aggtgatcaa tggccatgac      4260
     gcttcaagta gaaaaatagt tcaactgata ataaaaacaa acaatttttc tgataacgtt      4320
     acatggattc ctgaaagaga agaaattata attaaaccaa cagatacctt ggaatcgtta      4380
     cggcgaacaa gggaggaact tggttcaata tgtaaaaaat atagtgtcga agaattatat      4440
     attcgaatta acgatgattg tgcgcacaaa ttttatgaaa atattatgca aaatgattta      4500
     gcggaaaggg taccctcaat attgaaaatt tcagataaag ttaaagtcat cactgacgac      4560
     actacgaaaa agttaatcct gaacgattat cacatattgc ctactgcagg tcatgcaggt      4620
     attaaacgaa taattaacac cattaggcag aaatattatt ggaaaggcat taaccaagat      4680
     gtagcaaaat ttataaaatc ttgtaaaaaa tgccagaaat ttaaatcaat caatgttgcg      4740
     aaaccaccaa tgatcgtaac cacgacagct gaaagtgcat ttgataaaat ttatttggat      4800
     ttagtaggtc cacttatacc ctctgatgga tatgaatata tattgacaac gcagtgcgaa      4860
     ctgacaaagt tcattactgc aacacctatt aagaacaaaa caacagagac agtagctgaa      4920
     gcatttgtaa aaagcgtcat tctgaaatat ggcgtaccaa atcgtatagc atctgacaga      4980
     ggaactgagt ttatgtcgga tttgttttcc tcagtagcaa aactcctgaa catcgaaaaa      5040
     ttaaacagta ccgcgtatca ccatcaaacg ataggtgcat tggaaaacag tcataagtgt      5100
     cttgggaatt ttctgagaat tcaatgcgac aataaactgt tttcctggtc aagttggatt      5160
     ccttattatg aatttgccta caataatact gttcattcaa ccactaacta tacacctttc      5220
     taccttgtat tcggaaaaca ttccaagatg ccttccaatt tagcagaagc aactccggaa      5280
     ccagtgtata acatagacga ttatagcaaa cagatgaaaa caaaattgca aatttgtcac      5340
     aaagaagtac aggataggtt aattcaagaa aaaaccaagc gaacaggtga aatcaataaa      5400
     actgcgaagc agaaaatgta tagtaatgga gatcttgtat gggtaaaaaa cgagacagga      5460
     aaaaagttag aggcaaaatt taacggacca tacgaaattt tggaagattt agaaccaaat      5520
     gtgaagattt taattaaaga caaagaagac attgtacata aaagtaggat taaacctttc      5580
     ataaggcgtg tggtggatga agaattagaa gaagaataag aagaattaat atacaatcca      5640
     atttggaatt tttgaagtta aatgtttgtg gagtaatcag ttcatacata ctttgaggag      5700
     gtggtgtcgg cgatatgagg tatcaatgac atattgtttt gaaacatcat gtttacaagc      5760
     agttaatgat ttaaatttca atttaggtaa atatcattag gtattcaaca agtatcataa      5820
     cgtattcttt atatatttga taaagcatta atatttttga attttcaact aatagataaa      5880
     aatttaaaat aaaataaata gggcg                                            5905
//
ID   Gypsy-553_AA-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-553_;
KW   Gypsy-553_AA-I; Gypsy-553_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-257
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-257
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2123-2123 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 257 BP; 77 A; 57 C; 58 G; 65 T; 0 other;
     tgtggtggat gcacccctaa ctacgcctat gcgatgaggt ggatcgaatt acgacgacgg        60
     gtgttatgct tcgcgagcat aaacatccgt cgttggagag cgataaccta ccacgttgca       120
     tacgcagcaa aaattgtgca tcgcgaccac actcgataga gttaagtttt gaatttgaaa       180
     tatattcttg ctcgagaccc caaccaagta ggttgaacat ttaattatat ccgagaccca       240
     agtattaagg caaatca                                                      257
//
ID   Gypsy-554_AA-I repbase;    DNA;    INV; 6219 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-554_;
KW   Gypsy-554_AA-I; Gypsy-554_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6219
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6219
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2117-2117 (2021).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6219 BP; 1973 A; 1112 C; 1511 G; 1623 T; 0 other;
     gtggcgcagt ggacgctccc gtccggtaag tagttgttct ttggggtaag agaacaaata        60
     tcgaaaaaca aagcgattag tgaaatcacg tttgtcaaac aaaatggcgg aacagtcttc       120
     caccacgtgg agtggaattg aaactttttt ttttcaattg ttgccggctg gggaacggag       180
     aaaagtttat cgaattgagg gaaggagtga gaaaattaaa ttaattacca ggtatcagag       240
     cggcttgcag cttagtttta ttttattcag tggttaaaaa tgcaaaaagg gaatgtgata       300
     tacggacgga caagtgatag aaaggaagac gattgcttta catttccgaa tgtttcacgg       360
     ttaagtttcc ataagtttaa aatcattgta gcgaaagaaa ctgaaaaaaa agtgagataa       420
     acagtgtaaa attaaagcca aaaatggcgt atcggatctg ttagttttgg ttttttaaac       480
     acgtggtaaa gaaagaaata atggaagaag cgagaggact tcttgccaaa gtaatggagc       540
     gagaggactc caactgaaaa aaaaaagagc gagaggtctc ttgaagtgga aacagaaatt       600
     atcggacaaa gaaaaggagc caaaaatggc gtatcggatc tgttagtttc aattttttaa       660
     acacgtggta aagaaagaag taatggaaga agcgagagga cttcttacca aagtaatgga       720
     gcgagaggac tccaactgaa aaaaaaagag cgagaggtct cttgaagtgg aaacagaaat       780
     tatcggacaa agaaaaggag cgagaggact cctaatggaa atatgaaaga gagaaaacaa       840
     aagttcgtat gataataata agaatcaaaa taagaagcgc agaaaactct aaaaaaaaaa       900
     aacgtaatta aaaaaaaaaa aaaaaaacga agaggcgcaa tgaaccaatg gtaaagaatt       960
     ttttttctga ttttttacag gaaaatgaaa aagaaggaag cgaaaatcga catgattatg      1020
     aaagagttgg cagaggaaaa gtctgctagg gtggagttga gcaaacagtt ggagaaagca      1080
     aatgaaacga tcatggcatt gcagacgagt ttgagaaccc ctcggagtga aagtgtcgat      1140
     accgtagtgt tctcaggaaa tgcgggtcct tctagcactc agcacaatgg aaatgagact      1200
     ggagttgaaa tgtcacgatt catgacgtca gtgaatcaaa tgtctatttc ctccattaac      1260
     gtgcctgagt gcaaaccttc tgtcgtgggt gagcagattg gacggcgaga ttacgaagca      1320
     tggattgatc tactgaagga ttcgatgaag ttggcaggag ttgaggacga gccgactaaa      1380
     tttatcatcc ttaaggtgaa gtctggtcca atgcttttgg acatcttcaa gtctacgaag      1440
     tcaaccccgg aaggacccga cgaagtggaa ttcccgtatt caaacgcttt gttcagacta      1500
     aagacatatt tcgggtcagc gtcggatgtt atgctgcaac ggcgtaagct agcgctgatg      1560
     atccaggcac cggaagaatc ggaccttgcg ttcattatga gagccggctc gattgcccgt      1620
     ctttgtgatt tcagagaagg caaagagttc gaagaaatcg ttagcgcagt agccacccat      1680
     gcgaggaaca aagatgtgcg ggttgtcgct ttgaagatgt tgaacaagca aggatcattt      1740
     acggaactgg tcgacgcggt gcgcgaaatc gaggcagtgg cgatgaacga acaattctac      1800
     tgtttgcgtc ataacaagcc agaagaagca acggtggcag cggttactgc aggctttccc      1860
     aaggaaggat catcgcgtcg caatttgaac tatcgtacga catcgcgtgg aagatttggg      1920
     cagcattcag cgggccactc ccgattccaa aatcgatcac tggacacaag agggtatggc      1980
     aattttcgtg acaaggcggc ttaccgttgt ttcagatgtg acagcgtgta ccacaaagct      2040
     gagacctgtt tcgcaatcga taaagtttgc ctgaagtgtg gccgtaaagg ccatattcaa      2100
     agagcttgtc gggcgtcgtt caaaacggaa aatcatcgtc acctggtgaa agaggagcct      2160
     accgcaaagc ctgctgaggt ggcagcaatt gaggttgaag caacagcgaa agcagaagag      2220
     caaatggaag agaaaaacgt aggtgttgat ggttttcatt aaagtaatta cgttgataac      2280
     gatgatttac gttggaaatc ttgaattttt cgtttgtcaa taaagttgaa ttcgattgac      2340
     atttatctaa cttgaatttt ggcttatttt tccatcaaga atgccttagt acatcaatgc      2400
     ttttagcttt ggaaggagtc tactcataaa atttaatgaa tgcttgtcac attcattgat      2460
     gtttgagtgg atactgttcc aaagagtatg gatttaaaat tactcagaga aatgggcgct      2520
     agccacatcc atttatctgt gcatagattt ttctattgaa tttctgctaa ataaaatatg      2580
     acaatgattt tagatgtaat tttatatgga atggattgta gttgtattta gattgaattt      2640
     tccttgcatt ttaattggat ttaaattgta atgggaacaa atttgaattt gatttggact      2700
     gattgtgatg attcaagcat gccctagtac atcaatgtta aaagcgatat atctaataag      2760
     atttcctttc aataaatttt ataaatattt tgttacagtt gcatattgca acgtttacgg      2820
     cagcaagagc atcaatagac gaaggtatcg taaaagcaac agtggcagga ttagaatgtg      2880
     agttccttat tgattccggg gcacaagtga acacgataac ggagcatcaa tttgtcaaat      2940
     tatgcactga cgatagatac aggaaaggtc tattcaatag gcaaacgagt accgatcgtc      3000
     ctttgaaggc atatgcgact gctggggaga tacctgttct atccacattt gaagcctttt      3060
     tgcatatttc cgacaatcga ccaactcttc tcgaaaaatt ctatgtggtc aaggagtgca      3120
     gatcattgtt aggcagagcc acagcgacaa gatacaatgt tttgttgcta ggattacaag      3180
     ttccggtgag ctcaggaaaa tatgtagcgc actcctggta tgaatctaat gacatttcgg      3240
     cagtgatggt agacgaaatc tttccaaaat tcaatatccc tcctgtactc attagttatg      3300
     acaggacgcg gcctccatgt cgcaacatat tcatgaacat tccaatagct gttaagccga      3360
     ttgtcgagaa aagactccag caacttctcg cagcgggaat tattgagtat gtaacagatg      3420
     atatggacaa ctcgttttgc tcgtcaattc tagcaatccc taaaggaaag aacgatataa      3480
     ggctagttat agatcttaga ggtccgaaca gttatattca aagatctcct tttgctatgc      3540
     ctagcttgga aaaaatatta gctgagatag acggcgcaca gtggttctcg accatagacc      3600
     tgactaacgc gtacttccac atcgagcttg atgagaaatg tcgccatctc actaacttct      3660
     gtaccgaatt tgggatgttt cgctgcgtca ggctaccctt cggtctgtgt aacgcgccgg      3720
     atattttcca ggaagtcctg cagaggaaaa ttctcggtgg ctgtcgcggc gtcaagaatt      3780
     atttagacga tatcttcgtt ttcggaaaaa cccccgagga acacgatgaa aatcttaaag      3840
     aagtgatggc ccgccttcga gatcacaatg ttaaaattaa tgaatccaaa tgtgtgttca      3900
     agagccaatc agttaagttt attggattta agatcactcc acaagggtgg caaattgagg      3960
     aggaaaagat gcgagctatt gaggaattca gaacaccaga aactgtcgca gaggttaaga      4020
     gttttttggg tttggtgaca tttgttgaca aattcgtacc acatcgagca acacgaaccg      4080
     aaaaactacg agctttagca aatgcagaaa ccttttattg gtccgagcta gaagagcaag      4140
     agttcagtgc attcaagaag gaggctgtta aaatgattaa gacactggga tactttaacg      4200
     cattggatag gacggagata tttgtcgacg cttcagcagt tggtctcgga gctgtcttag      4260
     tacagttcaa tgacaaggga acaccaagga tcattgcctg tgcgtccaaa gctttgacag      4320
     caacagagca acgataccca caaacacacc gtgaagctct ggctgtagta tggggtgtcg      4380
     agcgctttgc ttattatttg tcgagcaaat cgttcgttat tagaactgat gccgaagcga      4440
     accagtttat attcggggga aagcaccgaa tcggtaagcg agctatatcc cgcgccgaag      4500
     cgtgggctct gcggttacag ccgtttgatt tttctattca gcgtgtccca ggtgaattgc      4560
     tggctatttc caaatttaat cataaggtta taatgtatct atattctatt cagggagaga      4620
     taatgtggca gatgtactct ccaggctatt taagatgtct aaggaggctg aaccgtttga      4680
     agacagttgt gaggaccatg tattatttgc tttagatacc ggaagtatgg acatatcgct      4740
     gggagagata gagaaggctg ctgaaacgga cgaagaattg aaacaagtgg tagaagctct      4800
     ggcgcttgat ttgtggcctg cacatttaag gaaatacgaa gctcagaaaa aatatttgca      4860
     taacattggg ttgttgattt gcaaagatga taaaattgtt cttcctagtt ccttgcgcag      4920
     aagagctatg aaatcggcgc acgggggaca cgtaggagag gtttccatga aaagaatcat      4980
     gcgtgagttc ttttggtggc cgcgcatggc ttccgaaacg gaacagtttg tcaaagattg      5040
     tcaaacgtgc tgtatgctgt ctaggaaaaa tgcccccctg ccaatatctt ctcgtgacct      5100
     tcccgaaggc ccttgggaga tagttcaaac ggacttcctt tcaattccgg gttatgggtc      5160
     aggggatttc ttgacggtag tagacactta ttctcgctac ctctcagtga ttgagatgaa      5220
     gcggaaaacg gcggatgcaa ctaatgcagc actttgtgag atctttaagg tctggggatg      5280
     tccacgcatt ttgcagagcg acaacggccc gccattcaac agtacgacat tttgttccta      5340
     ctgggaaaat aaaggagtga aagtccggaa gtcgattcct ttgagcccac aatcgaatgg      5400
     gctcatagaa cgtcagaacc agtctttaat caaagctgtt tctgcttcaa cgatagatgg      5460
     atcaaattgg cgtaatagtt tggaaacatt tgtccacaat cacaatacgc tgattccgca      5520
     tgcgaggttg agagtcacgc cttttgagct cctagtcgga ttcaagtatc gtggtcaatt      5580
     cccgagtctt tggaatgaat ttcaccctaa agaattagat cgagaaaacg ttcgggaact      5640
     agatgcggaa gctaaactat acagcaaaca atacgcagat gcagtacggg gtgcaaagga      5700
     gagcagtatt aaggtaggag acgttgtgct tgtaagccag cagaagaaat gtaaaagcga      5760
     cccgacgttt tcctcggaac gattcactgt agtcactcga actggggcta agatagttat      5820
     tatgagcagt aatggagtac aatacgctag gaacgtccag gacgtaaaat tggctccacc      5880
     ggaagaaagt ttgaacttgt cggcccacga gttgatctca gacgaagata ctagtagaat      5940
     agtgcacaat tcaggaaatc gacagcaaga gcttcagata tgtcttcctt ctgacagtaa      6000
     ccaggaattg gagaggatca cacttcgtga gcgcgccaag ttaaaaagac cggtgcgact      6060
     aaatgataac tttgtgtatc gaatttacca gtaatacatt ctataagcaa ttcctacaaa      6120
     tacatataaa aagatgatta gtagagttta aggaataaag gataactttg gaacaaatca      6180
     aacaagatag agtaagcttg gagtacagca gagggatat                             6219
//
ID   Gypsy-554_AA-LTR repbase;    DNA;    INV; 834 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-554_;
KW   Gypsy-554_AA-I; Gypsy-554_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-834
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-834
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2124-2124 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 834 BP; 248 A; 132 C; 258 G; 194 T; 2 other;
     tgtagtagat aaaaggccca tgggaaatat aaaataaaat aaaatgtaat gcaaacttgt        60
     ctttgtagtt cttagcgtgt ttgacttcca accgatcatt ataagttccc cggaagaaag       120
     aaaaaagcta taggaaaggg gaaatgacaa acgggagaaa tctggttggg ctaaattgat       180
     cgttcttctc gatgtcacaa agagcgtgcc tggccgagtg agagagagcc gtactcgggt       240
     cgagaacgaa cgacgaggtt gcgctagatg aatgcttcgg atcgatcggt tgcctggagt       300
     gagagtgtgt gatgggaaaa cgaacgakga gtcgatgccg aactgagggt tcggttcacc       360
     aaatgaaaaa gttgaatgcg aaagagagcg gggagatatt tcggggcgtt tggcttcggg       420
     tagctagcag cgtgtgtgat aatgggtgat gggaaacgaa cgatgggtcg aggccggacg       480
     gagggttcgg ctcgacgaat ggaaaggttg aaggcgaaag agatggggga tagttcggga       540
     cgtttggctt cgtgagagcg taggtaagaa tgaaaaaaaa aagtctttcg atgaaaagtc       600
     tctcgggaga agcaaagaag cgaaccgacc cgaagcggct tctgattgat ctgagtwcag       660
     gttcgccgtt gctgcggcgg aacgggttct tcattctgtt gacagatgta tgtgcgattg       720
     gacgcgtttt gatagtacaa aaaccttgct tcggagtccc gaattgtagt ttgttaattt       780
     aaccggagat ctataagtga ttcggaataa aaaaaatggc gaaacgttac gaca             834
//
ID   Gypsy-556_AA-I repbase;    DNA;    INV; 4919 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-556_;
KW   Gypsy-556_AA-I; Gypsy-556_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4919
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4919
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2118-2118 (2021).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 4919 BP; 1498 A; 917 C; 1196 G; 1307 T; 1 other;
     tctggcgacg aggatgatgg acaaattggt gagtaacagt gatctggcag taattgaaaa        60
     ctgggaaaga aaataaaatt ggtgtgcagt gaaaggcatt ttgcgtgagc ttatcttctg       120
     attagcaccc cagggcgtaa taccactttt ttttgatagg ttataamatt tgtggatgaa       180
     ttgaagcaac atccaatgtg agatgttgca atgtaatgcg acatgcagaa ggattgcagt       240
     gagtgatgtg actgtgagca gtgcagattg gaagtatttg gccgaaagaa gaattataga       300
     agttgtctct gaggagaaaa tgttctgaga ggaaaatttt ctgaggaaat ttgattgaag       360
     gacatggaaa ataaacaaac gatcgctctg aggagctggc atgtgtcgat cgacagggta       420
     ctctgaggag tagatttttg agtggaagat aaaatattac tttgagaagt aaagagagac       480
     gtgacctgag gggcttttat tgtctgattg tcaaactatg aagttaataa gattactgta       540
     ataatggagt ctatagtcga actaacattg aacggaacag aagtgtaaat aaatgtgtta       600
     attatttatt tatatgctac attttgcaga tcgatgaagc acgacccatt cctcctttcc       660
     gctgtgagga gattgggaag aatcagctgg caaaggaatg gaaaagttgg aaatcggcct       720
     tggaaattta tttcgaagcg tacgatattt tcgaccagaa gaaaatgcgt gctaaactcc       780
     ttcatttcgg tggtaagcag cttcaaaggg tgtatgagaa cttaccagat gtcgataagt       840
     tgccgctcat ttcaactaaa cccaattggt acgatgttgc tgtatctaaa ctggatgaat       900
     attttgagcc tggacgacag tacattctgg agcgttgtcg gttgaggaaa atacgccagg       960
     agaagaacga aagatttgcc cactttgtgc ttcgcatcag gcagcaattg gcagattgcg      1020
     gattggaaaa gtatgctgct gatgtgcgcg aagtgttaac cgagattttt gtgctggacg      1080
     ttatcgtaga agggtgtgca tcagaggaac tgcgtcgccg tattttgcag agagatgttt      1140
     cgctaacgga agtcgaagga atgggtgcca tgttggaagg cgttgagcaa caagtcaccg      1200
     atctaacttc actcaatgtg cagcaaccat tgtcagacaa ggtgtatcgt attgaggcgc      1260
     gcaaagagat gcatagaatc cccgctgggc atagccgtaa gttccaggtt aatcgagaaa      1320
     tcacctgttt caactgcggc actaaaggac acatctcgtc ttctcccgaa tgcaaagcca      1380
     gaaaccaaac atgtcgtcgt tgtaagagaa cagggcattt cgaagctgtt tgcagaaaac      1440
     ggccagcgca gagattttca tcgtcagata ctaaaaaagt gcgtttagtt gagaagaacg      1500
     acaactcaaa caacaacctg ttcgtagaag gcacaccgca tcagtcaaac ccgcataaaa      1560
     agccatatta ctgtttctat ttcggcaacg actccaatgt ttttgagtgc accgttggcg      1620
     gagtgctatt gaatttgtta atagactctg ggtccgacgt aaacttgata cactcaacag      1680
     catgggagaa actgaaacat caaggaatca tagttacgga tatgcggaaa ggatgtcgtg      1740
     agatcatcaa aggatatgga agcaatttac ctttggatgt actgggatcg ttccgcgcca      1800
     aagtcgaggt aggaggtaga agtgaaatgg ccacattctt cgttgtgcag gaaggtgaac      1860
     gatgtattat gggcgataca acagcgaaag cacttggaat cctgaaaatt ggcgttgatg      1920
     tgaatctgct ggataacaaa tccgaagggt tcgggaaaat aaaggatgtt caagtccaga      1980
     ttcatatgga tccttcattc aaaccagtat ttcaaccagt tcggcgtgta ccactcccgt      2040
     atgaggcagc tgtgaatgat aagctggatc agttgttggc gaaagatatc atcgaggtga      2100
     ctaaatgtta aatcattgat tgattaattt atttttttac ttcattgcaa tattaaaaat      2160
     aaaactaaac aaatgaatcg catttttttt ttgtttggtt gttgcattgt ttaacaatag      2220
     agttgtattg gcttaagcgt aatatctatt cactgacgtt ttgttaaata ttttaggtca      2280
     aaacagggcc tactacatgg gtttctccgt tagtcgtagt gggtaaatcc aacggtgaac      2340
     ctcgtgtctg tttggatttg agacgcgtca atgaagcggt tctgcgagag cgttacccta      2400
     tgccagtagt tgacgagctt cttgcacgaa ttggtaaggg taccgtacgc agtaagcttg      2460
     atattcgaga tgcatttttg caaacagaac tggctccaga atcgcgcgac attacaactt      2520
     tcattactag ccggggactc ttcagattta agaggcttcc atttgggtta gtgtccgcac      2580
     cggaaatatt ccagaaagtg atggaggaga tattagccgg atgtgagggt aagtggacaa      2640
     tatatgtttt ttacataacg gcctcatatg aaagtacact gatacaggta cggtttgcta      2700
     tttggatgac atttacgtag aaggcgatga tttacaacag cacaacgtgc gtttaaacaa      2760
     ggtttatgaa cggctccaca atagaggggt agttttgaac cacgaaaaat gtgtaattgg      2820
     agttcctgag ctgcagttta ttggtcacgt gatctcggct aatggaatcc gcccttcgcc      2880
     ttccaaagtc gacgcactta tttcttttag acgaccgctt aatgtttcgg aagtgaaaag      2940
     cttcctaggg cttgcaaatt ataaataagt tcattaataa tttagcagcc ctagatgaac      3000
     cactacggag attgactgaa catgacgcac attttgaatg gaggagtgaa catcaagcat      3060
     cttttgatgc aatcaaaaaa gcactttcga acacatcgag cttgggctac ttcaatacga      3120
     accattccac gtccgtcata gtggacgcaa gtcctaccgc attgggagct atattggcac      3180
     aaacaaacga agctggggat caccgagtca ttagtttcgc atcgaaatct ctcaccaaga      3240
     cggaacaaag atactgtcag acggagaaag aagctttggc agccgtgtgg ggggtggaaa      3300
     gatttcaaat gtatcttcta ggtttgagat tttttctggt cacagactgt aaggccttac      3360
     agtttttgtt cgcatcacga tcgaaacctt gtgccagaat cgaaaggtgg gtgctacggc      3420
     tacaggcttt cgactactcc gtcaaacatg tagcaggaga gaagaatgtg gcggacgtcc      3480
     tgtcacgact gtctacatta gacccgacac cattcgatta ttcggaagaa ctgttcgtga      3540
     atgaaattgc aaacgttgca gcaaacaatg ctgcgataag atgggaagaa attgaggcgc      3600
     tatgtcggca ggatgaggaa atacaggaga ttcttaacaa gatttcatgc ggtcgtttgt      3660
     tcgatcttcc aaaagagtac cgagtgattg ctcaagagct atgccaagtt ggcaatatat      3720
     taatgcgagg agatcgtatt gtcgtgccca actctctacg acaaaaggtt ctatctctag      3780
     ctcacgaagg tcatcctggt acccggatga tgaagagcca tttacgtgtt tctgtttggt      3840
     ggcctaagat ggacgcagaa gtcgaaactt atgttcgcaa atgccgaggg tgtatgcttg      3900
     tgtccgctcc cgatgctcca gaaccaatga gacgtcgaga cttaccaacg gggccatggc      3960
     aagatattgc aatagacttc cttggccccc ttccagaagg ccaattcttg ttggtagtta      4020
     tagactacta cagcagatat tttgaagtgt gtgagatgac ctgtattaca gctgagtgca      4080
     caattaaaga actgcgaaca atattttgtc gatttggaat tccaatcacc cttaccgctg      4140
     ataatgcccc acagttaagt gaagattgtg aacaattcgc agaattctgc caaagttatg      4200
     ggattaagct catcaacacc gttccgtatt ggcctcagat gaacggagaa gtagagcgac      4260
     aaaatcgaac cattctcaag cgtttacaaa tatctcagga actcggacaa gactggagag      4320
     ttgagcttca aaaattcctt ctcacatatc gttcttcaat ccactctact acaggccgtt      4380
     ctcctgctga actgatgttt ggacgaaaga tacgtacaaa acttccacat ttgacaaact      4440
     ttcgggtcga tgatgaggat accagagaac gagattcaat tcagaaggaa aaagggaaag      4500
     agtatagtga tgcaaaacga aaagcatcgg ttaaagatat tgctgtgggg gacactgtac      4560
     tccttaaacg aatgaagaag gataataagt tgagcacagc atttatgaat gaggaatttg      4620
     tggttcttag caaacgtgga gcagacgtaa ctgttaagtc attaacgtct ggaaaagagt      4680
     tcaggagaaa ttcagcacac atgaaaaaac ttgaaccctc aactacttcc tatgacatca      4740
     gcagagggtt ggacggaatt aacaaacccc aaaatgaaca gcgctctgtt tctccaatag      4800
     attcttcgga acgccaagca ccaccagatg aattaactgc accagagaag cggaagagaa      4860
     aggaaccagc ttggttcgac aactatatgc cacattacat caagaagtgt taaggggga       4919
//
ID   Gypsy-556_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-556_;
KW   Gypsy-556_AA-I; Gypsy-556_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-209
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2125-2125 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 209 BP; 68 A; 33 C; 67 G; 41 T; 0 other;
     tgtagtggcg cacccctcgt gcgacatagg ctagggcgag gatgagcatc accgagagag        60
     tgggtgaggg ggagagtgag aaagggggga ggattgttgc gaccgccatt atagtagaga       120
     ggtgtgaaaa agtgacgatc cgtgaaaaat ataaaagatt caaaggaaac tcaaattgga       180
     ttgttctcaa aagttccgaa actactaca                                         209
//
ID   Gypsy-557_AA-I repbase;    DNA;    INV; 5522 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-557_;
KW   Gypsy-557_AA-I; Gypsy-557_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5522
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5522
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2119-2119 (2021).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 5522 BP; 1632 A; 933 C; 1460 G; 1497 T; 0 other;
     aattggcgac gagcgagaaa agtgaaggtg agtgattatg gtggataatt tccgaaagat        60
     atgttttgaa agcgtaattt cgtggacggt cgattacgct tgaacctgaa gagacatgtt       120
     ttgcgcagtg agaaaatggc gtcatgcttc gtgaaaacgc ttgtattggt gctgctgttt       180
     tgttgggagt tattgatttt cttcgataaa gttctctgat aagatttcca ttgtttgtat       240
     gtgtatgctt aatcaaattg ggatcatcat catcaattat ggttctggtg aagtgaagtg       300
     acgaaaaacc gagattaggt tgcggttgct gctatctaac agctgtttgc gatgtgtttg       360
     ggatgttcaa tttttgtagg caagttgcag cagtctggaa tgttgatgca aaatgtgtga       420
     aaataaatgg tttaaacgaa tgcttcaggc ttagagacag gtaggagctg attatggctc       480
     gggtggtgta tgaactgtag tgtcagtttt atatttgttt tgttttgtga cgtcgatgta       540
     aatggaatgt cttcgaagtc agtttgggag ctggctggta gtttgaacat cgatttggga       600
     atcgatactg tgcacgtcag tttgggaact gattagtttt cgatttggga atcgacgaaa       660
     aaagccagtt tgggaactgg ataaagtatg gtagtgcatc agttggggaa ctgatatttt       720
     ttttttctcg atttgggaat cgaaatcagt ttgggaactg agtttttttt tcgatttggg       780
     agtcgaaaat tactggaata gattaaatgt cagtttggga actgaccaag ttctaagagt       840
     gtagatcgat ttgggaatcg acagtagtta catcaattag tgaactgatt agatttcgat       900
     ttgggaatcg acaaaaaaaa gccagtttgg gaactggata aagtattgta atgcatcagt       960
     tggagaactg atattttttt ttccgatttg ggaatcgaaa tcagtttggg aactgagttt      1020
     ttttttcgat ttagtgaatc gataattact agaatagata aaaaacatca atttggtaac      1080
     tgattatgtt ttgagggcaa tggacgattg gggaatcatt agtcgccgta tcagtatggt      1140
     aactgaatat tacgtaattg cgtgcgcaca ggaaatatag aaccactaaa ttttagtgct      1200
     atatgattga ataaagaggt acctattatt atagatactt atggtggttc tttgtctcca      1260
     tttttttttt tctagatgaa tgattacagg ccgatcgtcc agttcaaatg taatgagatt      1320
     gaaactggaa aacttcataa agaatgggaa atatggaagc aatcgcttga atgttacttt      1380
     gaggcagaag agattacaga tcagaagaaa aaacgggcga aattgttgca cctaggcggg      1440
     ccacagttgc agacactctt caaaagtttg cccaacagcg agaagttttc ttacgtgaca      1500
     ccagaacgac agttttatga cgtagcgatc gaagcgttcg atcagttttt taaacccggt      1560
     cgtcaggatg ttctggaacg tcacaaattg cgccacttga aacaaagtca gggagaaagg      1620
     tttgctgaat ttgtcattcg ggttcgtcag cagatcaagg aatgtggatt agatcgatac      1680
     cccgaagaat gtggtaaaat gttggcagat atcatgttga tagatgccat cgttgagggt      1740
     tgtctttcaa acgagctacg tcggcaaata ctgcagaaag accgtaatgt agaggaaatt      1800
     gaggagatcg gcaaaatgct ggagggcgta gaaaggcaag tcaaggattt cgatacaaag      1860
     tccggtgaag aaaacagata tggcgaggtt aacaagatca cacgaagacc ggccagaatg      1920
     aattcgtcac cggtcagttc atgggtaccc cgactgtcta aaatgggaaa aggtcaagga      1980
     aaggatgatg ttcgatgttt caaatgtggt ttcaaagggc atatttcgtc cgatgttaaa      2040
     tgtcctgctc gtggcaaaaa gtgcaacaac tgtaatcgca ttgggcattt tgaatcgcag      2100
     tgcaggattc ggaaatttca aggacaagat cgttttgtag caccggcggt agttaagaag      2160
     gtaagagctg tgcaggaaat agaggaagtt aaacgtaata cactaggaca gcaggatact      2220
     gaggaaaccg caaaccagca ggataagaag acctactacg ccttctacgg tggtaatgaa      2280
     acgaacatca tgaagtgcaa agtgggcggc gttgatttgg acctgctggt ggactctggt      2340
     gcggatgcaa atctaattcc gcaagcgaca tgggaggatt tgaagcagaa agggataact      2400
     gtgaagcatt ccgaaaaagg cagctcgaag attttgaaag gctatgccag tgagcaacct      2460
     ttggttatac tgggaacatt catcgcgaat attgaggtcg ccggtaagac cgaagaggct      2520
     acatttttcg ttgttcaagg agggcagcgc tgtctgttgg gagatttcac agccaaacgg      2580
     ctcggagtcc taagagttgg cgtgaatatc gaccaagtgg tttcgaagac tgagccctta      2640
     acaaaaataa agggactcca ggttcacatc cgaatggacc cgtacgccaa gccggtgttc      2700
     caaccgatgc gacgcctgcc ggttgctctg gagagtgctg tgaatagtaa gttgcaggat      2760
     ctgttggcta gagatgtgat cgaggaaaag aaagggccgg ctacgtgggt ttcaccgcta      2820
     gtagttgttg gcaaggccaa cggtgaaccc cgtatatgtc tagatttgcg cagagtgaat      2880
     gaagcagtgc aacgtgaacg acacccgatg cccctcatag acgatttctt ggctcgggtt      2940
     ggcagaggta tgatcagaag caagctcgat atcatggact catttttgca gttagaacta      3000
     gatgaagaat caagagacgt tatggttttc atcacgaatc gtggcatgtt tcgattcaaa      3060
     agaatgccgt ttgggctagt aacagcgccg gaggtgttcc aaaggaccat ggatgaaaca      3120
     ttagcaggct gtgagggaac gtggtggtac atcgacgata tctacgtcga gggaaaggat      3180
     caaactgagc acgatgctcg cctagcaaag gtaggctgaa atgaacagtt gtttatttac      3240
     gaaacaactg gtttttcatc gttgtgcaac aatcttttct gaataaagga ttttcaaatt      3300
     actttgtaaa agtttggttt catttttttt ctcctttgtt ttatttttta tttaggttct      3360
     agcaagactg aaggagcgaa acattaaact gaattggaaa aagtgtgtta taggggtaac      3420
     ggatttagaa tttctgggtc attgcatcac ttcagatgga atagttccat ccaaagataa      3480
     ggtggaagcg ttaatgtctt tcagaaaacc ggaaacctcc aatgaagttc gcagtttttt      3540
     gggtttggca aattatctaa atagattttt gccaaatttg tcgaccatgg atgagccttt      3600
     aagagcgctt acgaaaaagg gagcaccttt caaatggacg gcggagcatg atcaagcttt      3660
     cgaagagatc aaatctaaaa tggcgaaacc tacggttctg gggttcttta agatgggtga      3720
     caggacactt ttgatggcgg atgctagtcc ttctggctta ggagctattt tgatccaagt      3780
     cgacacaaat ggagattatc gaatgatcag ttacgcatca aaatcgctaa cagacacaga      3840
     aaaacgctac tgccagacag agaaggaggc actttctctt gtgtgggcgg ttgagaagtt      3900
     ttatgtgtat ctctatggaa acgaatttga gctgttgacc gattgcaaag cgttgatcta      3960
     tctctttact catcgctcta ggccttgcgc cagaatcgaa aggtgggtat tgcgcctgca      4020
     gagtttcgac tacaaaatta cacacgtgcc tggcgacgaa aatctggcgg acgtgttttc      4080
     aaggttatcg gtgatgcgtc ctataccatt cgatgagttt gaggaaatga ccatcaggga      4140
     aatagcatct tcttcggcaa atgcagtggc tattacttgg gatgagttgg tagaagcctc      4200
     tttgaatgac acggaaatcc aacaaattct tcaatctcta caccagggta aaattctaca      4260
     gctgccattg gaattcagag ccttcgcaaa cgagctctgt gaagttgcag atatccttct      4320
     acgtaccgac cgtattgttg ttcctgttaa actgcgtgac agagtactgc aaatagcaca      4380
     cgaggggcac ttgggcatgc agatgatgaa agcatcatta cgttcttctg tttggtggcc      4440
     taaaattgac agggcggtcg aggaatttgt caaaaagtgt cgtggctgct ctttggttgc      4500
     ggctccagat gctccggagc caatgacaag aaaacgtatg ccgactggtc cctgggaaga      4560
     tatagctgta gactttctgg gacctttgcc agagggtcag tggctttttg tagttgtgga      4620
     ttactatagt cgattcatgg aagttgtaga gatggacagg attacagcaa aggacacgat      4680
     tggggaatta gcaacaattt tcggtcgttt tggtattcca agaaccatga gagcagacaa      4740
     tggtccacag ttgcgggcaa attgtgaaga aattcaggat tattgtcgag agctgggcat      4800
     tgagttagtg aacgttaccc catattggcc ccaggctaat ggggaagtgg aacggcaaaa      4860
     ccggaccata ctgaagcgac tacgaatagc acatgagcta gggaaggatt ggcgactgga      4920
     gctacgagca ttcctgttgt cgtatcatgc cacgaatcat tcagtaactg ggaaatcgcc      4980
     gtcggaattg atgtttggga ggcgaatcag aggcaagctg ccggaagttc cacgactaat      5040
     atatcacgat ggagaggaga gagatcgaga caaattatca aaagaaaagg ggaaggaata      5100
     cgcggacctg aagaggaaag cttgtcgaag cgaggtgaaa gtaggagaca aggtgttaat      5160
     gaagcggaca aagaaggagc ataagctatc aacgaatttc tcgccagagt tatttgtcgt      5220
     agtagaaaga ataggatcag aagtaacgat caaatctttg acaacgggga agcagtttaa      5280
     gcgcaatgtt agccacctta agaaaacgga cttggagaag cagatggaat cggatacttc      5340
     atctacggaa gtaagcactg atgttgacaa ctcgcttgat gaagacaaac aagaggataa      5400
     attctcggat gatcccccaa atatcgacag accagtcgca gctaagcgga agcgcacaga      5460
     accaacaaga tatcgcgatt ttgttccata ttaatttgtg ttcatttaaa agaagggagg      5520
     ga                                                                     5522
//
ID   Gypsy-557_AA-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-557_;
KW   Gypsy-557_AA-I; Gypsy-557_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-231
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-231
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2126-2126 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 231 BP; 79 A; 27 C; 69 G; 56 T; 0 other;
     tgtggtatcc tgtaccccac tatgccgtaa cgtaatatat ggttatacct gaggagagaa        60
     agaacattga gtgtggagag tacggagggc gtggagagag agatgaaaag ggacttgaaa       120
     aagaaacgtg gacgtgatcg gaggtagaaa agttacggcg gagttgaaat cgaaataaag       180
     aagttatgaa gtgtgaataa gttgttttta ctgttgcatc cagatattac a                231
//
ID   Gypsy-558_AA-I repbase;    DNA;    INV; 6260 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-558_;
KW   Gypsy-558_AA-I; Gypsy-558_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6260
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6260
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2120-2120 (2021).
XX
DR   [2] (Consensus)
XX
CC   Copies are >98% similar to the consensus.
XX
SQ   Sequence 6260 BP; 1887 A; 1282 C; 1493 G; 1592 T; 6 other;
     ttttggcgac mgtgacagtt taattatgta tttttgagaa tggtaaaata taaaaaaaaa        60
     aataaccatg tgatcgttcg tagttgataa ttttttagga aatcactcat tgcgtagtaa       120
     aaaaaaaata aacattgtaa aacgaggtac aaccagagtt agaatggcta tcgcatgtta       180
     tatgcgaacg catttgttca tcaaagcgag ttgagaggag atttttgatt gaaatggcga       240
     gttgtgagga cagccaaaag tttcattcag aatggcgagt tgtgaggaca gccgatatat       300
     caaagcgatg ttgtgaggac cgcttgaaac tttgattgac atggcgagtt gtgaggacag       360
     ccaaaacttt cagataggat ggcgagttgt gaggacagcc gatatatcga agcgatgttg       420
     tgaggaccgc ttgaaacttt gattgaaatg gtgtgttgtg aggacagcca aaagtttcag       480
     tcagaatgat gagttgcgag gacagccgat atatcagagc gatgttgtga ggaccgctta       540
     agactttgat taaaatggcg atttgtgaga cagccaagat tcattttgaa tgacgagtta       600
     tgaggaccgc aaataaacaa cgcgaaggtg tgaggaccgc tttgaatatt gattataatg       660
     gcgaggtatg aagacaggaa cttgacgtgc aaaaagtatg ccttagaaaa aaaaaagatt       720
     attctgccta tagaaacata aatcctgaaa cagtaggtgt gatcgaagaa ccacacatga       780
     gagaaaccac acacacacac acacactgac agaagagatc tgacttcctc tgagcgagca       840
     tgccacataa caatacacat aacgcaaata agttggcgca gtgtattcac caatacacgg       900
     ctataaagaa agacaaagcg tgtgaaagta aatggggaga gcgagttgga acagagaaaa       960
     aatatggcaa caaggcaata cttgttacat atttcaaaat caaggtattt tttttttctc      1020
     tccgtgtatg gctgcgtgtc tgacgcttcg tgttgtattt atctgacaca tctgacccat      1080
     cgtcccattc tttggtagtc tgtgtggcat ggcaacctta caatacgcgg gaatttggat      1140
     gcacaaacac gaatgaaaat catcattcga taaaaagatt tcgaccgaat tagtggtgat      1200
     tgtactccgt tgataccgaa aaactttgtt gaaaattaac aagtgaaatt ttctcgaata      1260
     ctctccagac tcgtaccata ttgaaaggta atatgattat tttggaaaat gtattcaagt      1320
     aagstctaac actaatatat tttctgtttm ttgaaatgaa gaaattgtca cgacgcaacc      1380
     atgttcgctt ccggaaaata tgttcgtgcg cctccagcag agccaagtga cgatgaggac      1440
     acatcttgtg atgaagttga agcgggacgt ttcgtgcgtg ctcctcatct tcaatactcc      1500
     aataccgaag aaactgatga tgattacgcc gattactcac gcgttggtcc aaattatcaa      1560
     gaggaaatgg aagcacggat tctgcagttt cagaacgcct tgaaagaaat gagcgaaact      1620
     cttgaagctt ctcgtaaccg tgcccacaag gaaagtccaa acatggaagt gactaaaaca      1680
     gtgaatgttc cgttgaccac gccgtcagta ccaccatcgg ttccgtcttc catctcaccg      1740
     tctgctcctc ctaccagtgg aaatgtgatc cggtgggaca acattaagcc tttccccaaa      1800
     aatgtggcgg caaccaaaat gtgggaagct tggatacact ttctggagga ttttgagatt      1860
     gctgcctctc tttcatacct tcaggatcca aaacgtcggg ttgagcttct cctgttgtgc      1920
     atgggtgatg agctcaagag cattgtacga gccgcaaaac ttcgacctag tgaagatgaa      1980
     ggggaaaatt attacaaaca atttgttgac aacatcgatc ggcacctgaa ggcgatgacg      2040
     gatcctgcag cagaacacga agaattttca agaatggtcc aggaagaagg cgaatcggct      2100
     gtgaagtacc acgctcgtct taccgaaaag gtactcctgt gcgattacaa tccagcggac      2160
     caggatcgat tcgtccgaac tcagctctta agaggacttc gcaatgagga actgagaaga      2220
     gcagcacgaa cgtacagcca tgattcaaac acgattgtcc atgcagctac acgagccgaa      2280
     gcatttcaag cggaaatagc ggttcgcggg agcgactcga atgcccttgt agtaagcagc      2340
     aacagattcc gtccgtccga acgtcaaatc aagcgcaagc aggctttcca tcagccaaca      2400
     agcaatccag tgaagcggtc caagtttgac aggccgccta gcttcgaaca aagagcaggc      2460
     tctagtcgtc gtaataggtg ttccagatgt ttcagacctg ctcaccgaag tgaagaatgc      2520
     ccagcgctgc gaagaaattg caactcttgt ggagaacgcg gccatttcgc agtggcttgc      2580
     cgggtggatc gcgtgagcac ggtgaagaac gagaactcaa caatgcctgt ggatgaaatg      2640
     ggtacagaac aggtaaagaa gtagacgaaa ttattcaaag aataaataaa agagatacct      2700
     atggcgattt ggtccaaaaa accctttttt ttcttctcgt tatagtttgt caatgccttg      2760
     tcccttgaag atgtattggt agaatgccga atcggttcat ctagcccaat caaacttttg      2820
     atcgattctg gagctgacgt caatgtaata ggaggtgcgg attgggttgt gctggagagg      2880
     caattcaagc tgggaacagc tactcttgac ttcagcacag cctcgcctaa agccaatctt      2940
     cgagcctatg ctactattga accaatgcag gtacaatata gcttcagagc tacggtggaa      3000
     gcaattgggt ttaccaagcc tataattgat gcagattttc tggtcgttaa agaaggtagg      3060
     agatctttac tcggcagagt cacagcgagt gacatggatc ttttgaaagc tggagcaatg      3120
     gttaatacct gtgaaaaacc aacaatattc ccgaagatgc ctggagtgaa agtgcggttc      3180
     agtattgacc ccgcgattcc tcctgttcgt aatgcctatt tcaacattcc ggcagcttac      3240
     cgtgaagaag cacgtcaaag acttgaacag atggaagcga aaggaatcat agagagggtc      3300
     actagcgcac cgcagtggat cagtggcatg tctgccgtcc caaagggtaa gaaggatttc      3360
     cgcttagtgg taaatatgaa ggcaccaaac aaagccatta agcgggagta tttccgcttg      3420
     ccgctcatcg atgagatgaa ggtaaagtta catggtgcta aattttttac caagctcgat      3480
     ctttcggatg cattctacca tcttgaacta agcgaagagt cccgggatct taccacattc      3540
     gtatcagaaa atggaatgta ccgattcacg aggctaatgt tcggcgtgaa ttgcgcccca      3600
     gaagtgtttc agcgtgaaat gacacgtatt ttgaaggacg tgaaaaacaa aatcatatat      3660
     atcgatgacg tgctattgtt tgctgaaact atacaggagc tgagaataat agttacccaa      3720
     acgctgcaaa tcctaagatc gaataatctg actctaaatg ccttgaagtg tgagttcgac      3780
     cggacacatc tcaacttcct agggcacgag ctgagtgaaa aaggtttcaa tattgaggcg      3840
     tcgaaggtaa acgatattcg aacattccgt catccatcca cgtcatctga actccgaagc      3900
     ttccttggac ttgcatcgtt cgtaagtcca tatatcaaaa acttcgcaga catatctgct      3960
     cctttatggt cagtttcgac agcacaaaaa tggagctggg gtaaagagca ggaaagtgcg      4020
     ttcgaactcg tgaaacagcg catcatagat tcgacaatat cacttggatt cttctctgat      4080
     tcagaccgaa caattttgta cacggacgcg tcccctcatg ctttgggcgc cgtattgatt      4140
     caagaaaata aggatggaaa accacgaatc ataagctttg cctcaaaatc gctgacaacg      4200
     actgaaaaga agtacgccca gaaccaacga gaggcgctaa gcgcagtttg ggcggtggag      4260
     catttctcct actttttgct agggcggcat ttcactctgc gcacggatgc ccaaggggta      4320
     acatttattt taaaccgatc ccgtgaatcg tctaaacggg cattaacaag ggctgatgga      4380
     tgggccctgc gtctcagccc atacgattat gaaatcgaat atatccgagg agtggaaaat      4440
     atagcggacc cgtcgtcgcg actatattgt ggagatgatg acgagtttag tgaagaagtc      4500
     agcccttggg aagtatgctc cttggaaaaa cgtagtaatg aaattctcac tgagaaagag      4560
     attcacgact acactcwgcg agatgagacc ctgatgaagg taattactct tgtttataaa      4620
     aacgacaaat ttcttacttt agtttttttt cttgttgcga acttaggtgg ttcatgccat      4680
     gcaaactcaa atttggccta gagatttgtt caaatttaag tctattgcga ctgagttgaa      4740
     cttttccgac ggaattctcg taaagaatgg ttgtgtggtc atcccacacg cgcttcgaga      4800
     taaaacactg gaaatagcgc acgcaggaca cccgcttgag gcgaaaatga aaagcattat      4860
     gcgtagacga gtttggtggc ccagaatggc tggcgatgta gagaattggg taaaatcttg      4920
     tgctgtttgt gcagtaaatg gccgtccaga aaggccaccc cccatgcgaa gagcattcgc      4980
     ccctaagggt gtatgggaaa ccatcgccct cgatttcaac gggccatata ataaactagg      5040
     aggtatatca atcctagtta ttatagacct tcggtctagg tacgccatag caagaccagt      5100
     gaagtcaact aagtttgagc acacaaaagt cgtgttggat actgtgtttg agagagaagg      5160
     wtttccaaaa gcaatcaagt ccgataatgg accgccgttc aatggcgagg aatatgcaag      5220
     ttattgcgct gtacggggta ttcaaaccat attttcgacc ccgttctacc cccagcaaaa      5280
     cgggttggta gaaagcttta tgaaagtcgt taacaaagct atgtctgctg caatatcatc      5340
     agaagcaaac tatcaaaaag aactgcaggc tgcagttcaa tcatataatg cagccgatca      5400
     tagcatcact aaactcccac ccgaggaagt aatgactggg cgtaaaatta agcgtgggtt      5460
     accactggtt agcaacgaga gttctagtaa ggaagagcag tcgctggacg aaagagatcg      5520
     catcgctaaa ctgctgtcaa aagaacgaga agacggtcgg cgaggagcca aaccgtgccg      5580
     agtcaaacct ggtgataccg tcatcgtgga gcgtacatct aggggtaaag gtgacagcag      5640
     gtttgatcct aagcgcttca ccgtggtaca ggaaaacaac ggaagtttgg tcatctgcga      5700
     ttcagagggg cagcagctga gacgccatgt atcgcagacc aagaaagtcc ggcagtggcg      5760
     agatacagta tcgcctggac gatctagcgg ttctgtgact tccgtacatc ccacaagtaa      5820
     gagcggcgat gtaagcgagc ggcccaatcg attgaagcgg cctccttcgt atctgkcgga      5880
     atacacccaa gtaattgagt ctaatctggc agaataaatc actcagtcag ggctttattt      5940
     tatgcatgta agttgttact taccatttct tttcataaca ggagttttaa tttcttttat      6000
     tcatgcctgt tattcttgac tttcgcttcc ttatagtaat ccgtgcacga acattttgga      6060
     acttcagaaa ttgttctcca gtcctcggaa ttcacttctt catggcaccg gctcttgcag      6120
     gaaacttatt tttttcatga caggaagtgt cacggctagc tacgattttt ttttaaggaa      6180
     ggaagatttt caacagtcaa taaagttttt ggctaagttt actttgtttg attttatttt      6240
     cgatcggaga gaaaggggga                                                  6260
//
ID   Gypsy-558_AA-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-558_;
KW   Gypsy-558_AA-I; Gypsy-558_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-199
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-199
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2127-2127 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 199 BP; 47 A; 44 C; 55 G; 53 T; 0 other;
     tgtgtggggc gagacaacgc tgggctatta cggcccgtat tatatactac ctatgtggtt        60
     gtagctcatg cagttgctcg tcatacggga aggacttcct cattcgaggt caaatagctg       120
     acgagataac acgcgtgttg gagctgcaaa ttgtgaaccg cgcaatgggt gatttcctcg       180
     tggagttcta cactacaca                                                    199
//
ID   Gypsy-559_AA-I repbase;    DNA;    INV; 5041 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-559_;
KW   Gypsy-559_AA-I; Gypsy-559_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5041
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5041
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (07-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 5041 BP; 1545 A; 947 C; 1096 G; 1453 T; 0 other;
     gtgtcgacga ggattgtaat ttggtttgag cagtgaaaag tgaaaattca gtgcaaaaag        60
     tgaagtggca gctgatttcc gccagagttt taggcgaacg cgaatcccgt gtaattgaga       120
     agaagaaggt aaaagtgtgg aaagcgtgct acggtttttg tttgggccgc tttgtgattc       180
     cattttggct gctactgaaa aggccatctt ttgtttttcg gcagattgtg tcagatcaaa       240
     gcggagtaaa ttcttattgg aataggtgat atgtaattgg ggattttttt tttgtttctc       300
     tgttttgttt gccaagcagg tccggtagtg ctgattttcc ggaagcgtgt tatttgctta       360
     ggcagagtga tattgtgaaa agagagcagg ctaaaggaag aaaaaatcaa aatccggtgc       420
     tgctagccgc tgtacggcaa gaagaaaatt ttcatcgtag gtgtttggct cgttgtggtt       480
     acgtcgccgt cgccgtcgcc gagaagattc cagtgggttg ttgctgtgtt gttgattgct       540
     gttgtggagc tggttgctgc tagattgctg ttgttggttg ctgtggccgt ttgagtggaa       600
     ccgtgttgct gatcccttat ccgaatcaga ttttggtcgg aagtagtagc gtcgcatcaa       660
     aaaaaaagta cgtgctccat tttcttgtat tttatttact ttgtttgatt tggggagaat       720
     tccatattga gttagcctct tgtcttttgt ttgcttgttt tatctacccc agacaagcga       780
     tgccgttgat aggccatatt gaaacctttg tccccggcac aagcttcgca caataagtag       840
     aacaaattga gtggatcttc aagatcaaca agatttcaga agaagaaaag ctttcatatt       900
     tcttagcgtt gtgcggtaga gagacgtaca gcgaactgaa actcttacac cctggtgttg       960
     atttagctga gaagacttat gaagcgatta ttgagtcact aaagcgtcgt tttgacaagg      1020
     ctgatacgga tatgtttcag cgcaacaaat tttataacat ggtgcaaggg gactcagaaa      1080
     ctgctgaaga cttcatcttg aaggttaaac tccaagcgga aagctgtgaa tttggggcag      1140
     catttaagga aactgctatg aggaacaaat tggtgatggg ggttttggac aagcaagtct      1200
     agcaaaaatt aatcgaagaa gaagatttaa ctttggcgaa agccgagaaa attatcgtta      1260
     atcgggaagt agctggagtt aggactcgaa tgatgaacga caacaggctt acggtagtgg      1320
     cgaaagtaga tgacaacaga aggaaagtat atagctctta tcggtctaga agcagagata      1380
     ggaggaacag ggatgatagg agccgagata gaagtcacag caggaatcgc agtaggtctt      1440
     tccccacacc cagaaaaccc tatttctgtg ttttttgcaa caagaaagga cacacaaaga      1500
     aatactgctt tgagttaaag aggaaaaaga agatgcatgt caaatttgtt gaatctacac      1560
     ccaccactcc aacctctcca acccaaaccg ctagccgtac ggactatttc aagcgtctcc      1620
     gagaggacct caaggatagt agctcggaat ctgaggaaga ttgcatgcag atttcttcgg      1680
     taaagagact aaatgagcaa tgttttattg aagcttcagt tgaaagcgtc aatttgaaga      1740
     tggaagtaga ctgtggctca gcagttagcg tgattgacga gcctgactac catagcagat      1800
     tcagccattt gcagttggaa ccgtacaaca atagcttggt cgtcgtggat ggagcgaacc      1860
     tagaggttaa aggatacatc atggtgtcag cggatgtgca tggaaatcgc aagcaacaat      1920
     tggaattggt ggtattgaaa aggtcaaagc actcacgtag aattgttccc ctctttggca      1980
     gaaaatggct tgacttgttc ttcccagact ggcgcaaact gttttccagt gcgagagttc      2040
     atcagatttc agagagcgaa actgagcgca cagttgaaga tgttaagtgt aagttttctc      2100
     acatttttac aaaaagtttt tccgatccaa ttgtcggctt tgaaggggat cttgttctga      2160
     aggatgatag accagttttc aaaaaagcct atgatgtgcc tttgaggctt aggcaaaaag      2220
     ttattgaaca tcttgatggg ttagaaaagg atggagtcat taagcccatc gaagcaagtg      2280
     agtgggcttc tcctgtagtt gtagtggtca aaaaggatca aaatattcga cttgttattg      2340
     actgcaaagt ctctattaac tagttaatcg ttccgaatac ttaccctttg ccaaaagcac      2400
     aggatctttt tgcatcgctg gctggtgcta aagtattttg ctcacttgat cttgcgggtg      2460
     catacaccca actaaaactt tccaaaagat cgcaaaaatt catggtgatt aataccctta      2520
     aagggctcta cacttataac aggcttccac aaggtgcatc gtctagtgct tccatttttc      2580
     aaaaagtcat ggatcaaatt ttgaacggtt tacctttagt attttgttac ctcgatgact      2640
     tattgattgc agggatagac tatgaagact gtaaaaagaa tctttactta gttttagatc      2700
     gtttgtctaa agctaacatt aagatcaacc tcaagaaatg caattttttt gtaaattctt      2760
     tgccttacct tggacacatt atttcagaca aaggattaat gccatgtccg caaaaagtgg      2820
     aaactattcg tgcagctaaa ccgccacgaa atgttacaga attaaaagca tttttggggt      2880
     tgttgaactt ttatggaaag ttcattcccc atttgtcatc ccgcttgagt tgtttttaca      2940
     aattactaaa aaaagacgtt cagtttgtat ggtccaatga ttgcaaaaga gcttttgacg      3000
     aatgcaaaac atacctttta agtgggaatc ttttggaatt ctttgatcca aagaaacaag      3060
     ttgttgtggt ttcggatgct tgcacctatg gtattggagg agtgatagca cacgaaatca      3120
     atggcgttga aaaacctatt tcatttgcat cattttccct taataatgcc caacaaaagt      3180
     accccatact tcatttggaa gctttagcga tggtaactat catcaaaaag ttccataagt      3240
     ttctctacgg gcagaaattt aaggtgtata cggaccacaa gccactaatt ggaatttttg      3300
     ggaaagaagg ccgaaattcc atgtatgtta ctagactaca acgatacgtt atggaacttt      3360
     cgatttacga ctttgatatt atttatcgac catcttctaa aatgggaaat gcggacttct      3420
     gctctcgttt cccactccct actgaagtgc caaaatcatt gcaacgagaa tacattaaaa      3480
     atctaaactt ttcctccgat tttcccatcg attatctgca aatatcctgt aaaacagagc      3540
     aggatagttt ccttcaacaa gttgaaaagt acattacaca gggctggcct gaaaaaccta      3600
     aaccagaatt caaagatgtc catgcacatt atcaggacct ggaaatagtt gatggatgta      3660
     tcctatttca agacagactg atcattccta gttgtttaca aaagcctatc cttaagatgt      3720
     tgcataaaaa tcacaccgga attcaaaagg taaaacaact ggctcgtagg agtgtctatt      3780
     ggtttgggct gaataaggac atagaaaatt tcattaagtc ttgcagagtt tgcaatgaga      3840
     tgcatatctc ccaaaaacca aaaactacga acacttggat tccaacaacg agacctttta      3900
     gtcgtctaca tgcggacttc ttttactttc aacaaaaagt atttttaata attgttgaca      3960
     gcaacactaa atggctagaa ctggagttca tgccaaatgg gtcggatagc aaaaaagtca      4020
     tacgaaaatt tacagcaatg ttctccaggt tcggtcttcc agatattgtc gttactgatg      4080
     ggggtccacc cttcaactct acgcctttca tcaagttcct agagaatcaa ggtatcaagg      4140
     tcctgaaaag tccaccttat aacccgcaaa gcaatggaca agcagaaagg atggtaaggt      4200
     taataaaaga ggtattcaag aaatacttac ttgacccgca gatgcgaacc ttggagacag      4260
     aggagaagat ctacaacttt ttgtttaact acaggtttgg ataatggtca atttccttca      4320
     gaacgagtct acacttttaa acctaaaacg gatttagacc tcatcaatcc caaatcacac      4380
     tacaaaagac atctaactaa accaaagcat caacaatcta ctgatatttc cgtacacgat      4440
     ccttttacaa aactgactgc aggagatcct gtctactaca aaaatcataa cccaactgac      4500
     attcgacgat ggttgcaggc taagtttgtt aaaagattgt ctacaaatat tttccaggtt      4560
     tcactcggcg gtcgattgtt taccgcccat aggcaacagt tacgtttggt tgaggattcc      4620
     ttcgatcgca gaacctctac tattctgatc gatcgagacc cgccagtaca acctgaagat      4680
     caaaatacag caaaccacca actagcatct cacaccagcg acgatgagga cttttacgga      4740
     tttgcatccg attcaaatat ctttgatgcg cccgtctggt cattgccatc gagttctacg      4800
     cagacgccgt ttgaagaaca ctctgaacac caaagcgagg attcgaattc gagacgacga      4860
     ttgaggaaac gtaagatgcc tccaacgcct cctgtaacca ggcgatcgaa acgaagtaga      4920
     attatcaata agaacagtga ttatgtttat ttttgaattt acattctgaa ttaagttgaa      4980
     tactctagtg aattttatag tttgaatatt aatgataagc attaactgaa gggatgagaa      5040
     t                                                                      5041
//
ID   Gypsy-559_AA-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-559_;
KW   Gypsy-559_AA-I; Gypsy-559_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-204
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-204
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2128-2128 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 204 BP; 67 A; 38 C; 40 G; 59 T; 0 other;
     tgtaggagtt cagtcctatt cggacaaata gtccgaaccc ccttgaggga cagaagaaaa        60
     tgtgtaacaa agataggttg taaactacac gaaaagctac ctatataaac cgtcggaata       120
     aagctatatg ttgtctgttt tgaagtcagt actcaagaac actcttggtc atcggtattt       180
     attattatta ctccgcaagt ttca                                              204
//
ID   Gypsy-55B_DTa-LTR repbase;    DNA;    INV; 2543 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 17.08, Created)
DT   26-JUL-2021 (Rel. 26.08, Last updated, Version 3)
XX
DE   Repetitive sequences from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; REP-1_DTa;
KW   Gypsy-55B_DTa-LTR.
XX
NM   REP-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2543
RA   Kojima N.F. and Jurka J.;
RT   "Repetitive sequences from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1730-1730 (2012).
XX
RN   [2]
RP   1-2543
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to RR (26-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
CC   [2]: sequence updated and reclassified.
XX
SQ   Sequence 2543 BP; 828 A; 551 C; 522 G; 640 T; 2 other;
     tgttacgtac gccctcttct tcattttatt tgatggagaa agatgcacgt agaaaacaac        60
     cagcgaatct caaggcaaag ggagaggggc aatcgacaga ttgactcacc gaaaacaagc       120
     aaaggaatgt gcaacttgac gatcttttgc atggcatacg gtcagaacaa cgaccgcgat       180
     cgacctactg gtaaccatac accggcagca ggcaaagtgc atcagtcggg cgttgacgct       240
     gcatgtaggg gaaatcatag gtgggaacac ctaaataacc caaatatcac gggagccgag       300
     aaaaagctct atactggtat aaaagaccgt tgccggatag agaaggcaga cagagttcac       360
     tctgatctct gatatagtgc ttacactaca ctatattcca gaagtcgcca atgacgacag       420
     cccagaccag gaatcctgaa gatactcctg tgcccgtcga tgcaccacaa ctctccttgg       480
     aagaagtcaa taaaagccag caaaacatat cccgaaggaa gtcctgtcag tgactgaata       540
     aatcagcgtc ctcgaaggaa gtcctgctcg ccatttatga accacaacca tcattggaag       600
     ggagttttgt ttttgatgcc cgcagacata tcctgggaga aatctttctg cccacgattt       660
     caataagtga agccttgcta cagcatagct cctaaggacc agcatctatt tgcgatccat       720
     caaccagcaa agacttcacc atgggtggaa ccaattccag agcggaccac agtacggcca       780
     atgtgatcaa caccgtcaaa ataatcgatc acaaggacga cattcaggat gtgaaccata       840
     atctaaaaat cgtcatcggt atatttgttt tcgtggccat cctgaaggta gtcaagatgt       900
     acaagcgatc tgtacaaggt cgccgggacc agaagcacgc cctcgaacag gcgatatgcc       960
     gagtctaatt aaagcaaaca ataaaacaat aaacagtgca aagaagccaa aacaataaat      1020
     gcattaattg caaacaatag tgcaccgaaa caaaaataaa aaaaaacaaa ttgtgaactc      1080
     aggcatttat gaatgcaagt gcaacaacag cgatacgaag tgaagtgagc aagacatcgg      1140
     agacgccgct gcccgcaacc caactcatcg gagaagacgt gtgccgccgt gggatatacc      1200
     gacatatcta cataaacata catacctaca tatatatata tatatacaat aagtgattgt      1260
     gtttaagaac gagacttttt ttttgttgtg tgtttcaacg atagtgtttg cacgtatata      1320
     tatatatgtt tctaatttct tcaaaaagcc caggatccag cgcgtcgaga tctcatcgcc      1380
     caggaccagt aaaggggtaa gtttgtcgga acacggttcc tttatcaatc atatatatac      1440
     atatatatat ccgtgcacca tgattaacca tagggcccta gcggtcactc ttagaaagga      1500
     accacatttc cacattaaag taaagtatct tttatccaaa ttgaattcgc cgatcaccat      1560
     aaatgatcta gaacttttat acattgagac cttccgtctg gatttttccc cacttttaca      1620
     ttgtacaaaa gtagaaaagg ccatagtttg tgccacggta cccaacgcta ccgtttattc      1680
     tgaaaacatc tctaatgaat ttctgggaga ggttagtacc tttgtcatcc gtcagatgaa      1740
     ctaatcagaa aaataataca gtaataaaaa aaaaaaacac aataatacat tatctagcta      1800
     tttttaacta tatctttacc taagttaatc ttttataata taataaacat tgacttttca      1860
     gcggcgagta tcagccttgt gtttgtatga acaatcacaa gmgccctcag agcgacgttt      1920
     gtagtcgtga atagtcagca atttgctgac gtgtgcaccc tgtacgggtg gtaaattcga      1980
     tactctccgc taacaaactt tgttggtcaa ttagaattaa actcatatgt aatctcmata      2040
     ataatattac tcataaatgg cactagccaa tattttattc aataaaatta taatgtgaaa      2100
     acgtacttaa aatcatgaag tgctaagttt tcaaaaaggg ggtgctgacg cgataagtgg      2160
     agtaggtgaa gaataatgac ataacttttg acgaacaacc ttgacaatag gggatcgtat      2220
     tgcgcggccc gcgacgatcc atttggcaca cgaatgtgtg aaggggaggg attgtggccg      2280
     aaacattgcc cgatcgtgtt acgatcaagc gacagctgag cttgtggggc aatgtagact      2340
     gatgaccgac ggactttatg gacgcttact atttttcagg catcttaata tttattctcg      2400
     ttatgttgga gaggagaaag tcttaccaag aacccacccc atccggcgag cttatgccgg      2460
     caaaattggt gcctgaacat cggatgactt tccctcggcc caagtccttc tcaggactgg      2520
     ggcactaata tgcccacgta aca                                              2543
//
ID   Gypsy-55_AA-I repbase;    DNA;    INV; 7739 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_AA_;
KW   Gypsy-55_AA-LTR; Gypsy-55_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7739
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 3606434 3598696.
XX
CC   Positions [5259-5741] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..2838
FT                 /product="Gypsy-55_AA-I_1p"
FT                 /translation="MSYYNINANALDEEELNYELCIRGCSVDGSLDTRRRT
FT                 LRKVLREVEVAEVRESVHSFDDEFEVVPVKLQQIERQLQTGVESGSWSRLV
FT                 HLHKRLRRYGTISQDQFNRKSALLDAVTRMAKAYFNVDLNEIGKDTPVMTL
FT                 VPEGVALGASGGDQPLEDFGAWQLPTGMSGVVSSDGQRLGAVPKKQATGES
FT                 LILFSPDPNEELNSERRRQTFPATTGWSSSYGQPLPPVNASFVNASPERNQ
FT                 PIPGAMENENGVLGTPQYRTSVQMQINRPSQVSKGFVHPRGHETNEQPLPN
FT                 RSLHEEPVQPYGTIGAEVKQHGLLDECQHRTSDAAYTSPVWSQPMFQAGSS
FT                 HSLRLDDRPPLMTTVMANDPNLAGKRRDESEYIHKSEIEGYIRNYLSQMYG
FT                 TASSAPAVNQPVVQNIVDQFASLQMHTENAPRVHHPHPINQANQVPKLSLD
FT                 PPLQLGGDRREMDGPVRSPRIQTPWINEGVQNMSTRPVSRTPFIAAPPQNL
FT                 RISSPWVNPNNSFRTRLAHQTCNIIEKWPKFSGDSNSVPVVDFLRQLEILS
FT                 RSYQITNQELRMHAHLLFKDDAYVWFTAYDSKMDTWETLLTYLKMRYDNPN
FT                 RDRYIKEEMRNRKQKPNELFSAYLTDLEAMSQRMIKKMTDEEKFDIIVENM
FT                 KLSYKRRLALEPVYSIEHLAQLCYKFDALEGNLYNLRTANKPKVLNQINVE
FT                 DEYFDELVDGDVAELFAIQRNKNLKPVARLPLKESVRKSTEESLCWNCRET
FT                 GHLWRDCDQRKMIFCHICGNPETTAYQCPQNHNLRPKGPSVSKND"
FT   CDS           2874..6116
FT                 /product="Gypsy-55_AA-I_2p"
FT                 /translation="MSNEIVPQPNFQYFSQNYSITTKFRRCPHLQVRILDE
FT                 EIEGLADTGAGVSIISSLALIEKLGLQIQRCNVKIRTADSTEYTCLGYVNV
FT                 PFTYHDQTKVIPTIIVPQVSKILILGMDFLNAFNFRLVVTTNSEPQEIQNS
FT                 GDEEEAVDALLIEDFNGDNDQICFEIVPEEIPKPSSLNPETDESLEMPTIE
FT                 VPQQTIHSPADLVTEHELSAKERQELFEAIRILPATADGHLGRTSVLKHSI
FT                 ELLPGAQPRKIPNYRWSPTVEKVIDEEIQRMLNLGVIEECTGPVDFINPLL
FT                 PVKKSNGKWRICLDSRKLNSCTKRDDFPFPNMLGILQRIQKSKYFTAIDLS
FT                 ESYYQVGLDESSKNKTAFRTNKGLYRFVVMPFGLTNAPATMARLMSKVLGH
FT                 DLEPFVYVYLDDIIIISKSFEHHCQLIRIVARRLQQAGLTINLQKSKFCQK
FT                 RIRYLGYVLSEDGLSMDASKIQPIIDYAIPQTVKDVRRLLGLAGFYQKFIR
FT                 NYSEITTPITNLLKKDRKKFHWTEEANVAFEKLKNALISAPILSNPDFRLP
FT                 FIIETDSSDTAIGAVLVQVQEGERKTIAYFSKKLSSTQRRYSATERECLAV
FT                 LLSIENFKHFVEGSQFVVQTDAMSLTFLKTMSIESKSPRIARWALKLSKYD
FT                 ITLQYKKGSENIPADCLSRSVNHVDVDLPDPYIAGLKSQIEKFPERFSDFK
FT                 ISDEKVYKYVTNSATIEDPSYKWKHVVPLRDRINVVKEIHDQAHLGYLKTL
FT                 AKVRERHYWPRMSSDIKRFCSSCQICKESKTPNVNVRPVCGKPKLCSRPWE
FT                 MISLDFLGPYPRSKKGNVWILVVCDFFSKFVLVQCLRTATAPAVCTFLETN
FT                 VFTLFGTPSVCISDNAQVFKSGLIQKLLEKYGVSHWNLAVYHPSPNPTERV
FT                 NRVIVTAIRCALNQQTSHKDWDESIHTIAMAIRNSVHDSTGYTPYFVNFGR
FT                 NMISNGQEYEQIRDLGDGGNYEPPQLNENMRKLFEIVRRNLQKAYEKYSYS
FT                 YNLRANTRHHFQKGEIIYRKHVNLSDKSKDFVGKFGTKFSKARIREKLGTN
FT                 TYILEDLDGRRIPGTFHGSFLKKS"
XX
SQ   Sequence 7739 BP; 2367 A; 1513 C; 1698 G; 2161 T; 0 other;
     ttttggcgcc caacgtgggg ccgagaaaca gttagttgat tttgtaattg ggttttgccc        60
     gtgaaataaa ttaggatttt gaattgaatt tagtttgaat tgaaattaat tgcttgttct       120
     gcactaaact ttctaggatt ttgaattttt ctattgataa gttagcttta gatttcgttg       180
     ggattagcct taagatcagt aattgataag gaaatttggg tctagggtaa ggtacaaaga       240
     tctttaagaa gtttagtgct tacaactttt gatttgatag tctttctttc tttcttgctt       300
     atattttttt taattggtct caattaaaat ttaattctgt gtttattcca tttcaattct       360
     catttgtttc attattctcg aacgtaatat tatcatcggt ctatcgtgaa ttttctatcg       420
     ttaattgaat ttgaaaattg gtttacaatt atgtcatact ataatataaa cgcgaacgct       480
     ctcgacgaag aggagcttaa ttacgagttg tgtatccgcg gttgttcggt agatggatcc       540
     cttgatacgc gtcgtagaac attgcggaaa gttttgcgtg aagttgaagt tgccgaagtg       600
     cgtgaatcag tgcattcctt tgatgatgag ttcgaagtgg tacccgtgaa gctccaacag       660
     attgagagac aactccaaac tggtgttgaa tctggaagtt ggtcacgttt ggtgcacttg       720
     cacaagagac tccgccggta cggaacaatc agtcaggatc agtttaatcg aaagtcagct       780
     ttgctggacg ccgtgacgag aatggcgaag gcatacttca atgttgactt gaatgagatt       840
     ggtaaggaca ctccggtgat gacgttggtc ccggaaggcg tggcgttagg agcttctgga       900
     ggagatcaac cgcttgaaga tttcggtgct tggcagttgc caacgggcat gagtggtgtg       960
     gtgagttcgg acggtcaaag gctcggtgcc gttccgaaga agcaagcgac gggagaaagt      1020
     ttgattttgt tctctccgga tccaaatgag gagttgaata gcgagcgacg tcgtcaaaca      1080
     tttccggcga cgactggatg gtctagcagt tatggtcagc cgctaccacc ggtgaatgcg      1140
     tcatttgtga atgcttcgcc tgaaaggaat caaccgatcc ctggagcgat ggaaaacgag      1200
     aatggcgttt tgggcactcc acagtatcga acttcggtgc agatgcagat caatcgtccg      1260
     tcgcaggttt caaaaggatt tgttcatcca cgcggtcatg aaacaaatga gcaaccgctt      1320
     ccgaatcgtt cgctacatga ggaaccagtg cagccgtatg gaacaatcgg agctgaagtt      1380
     aagcagcatg gactgctcga tgaatgtcag cataggacca gtgatgcagc ttatacttct      1440
     ccggtttggt cacagccgat gtttcaggca ggatcttcac acagcctccg tctcgatgac      1500
     agaccaccac tgatgacaac agtgatggcg aatgatccga atctcgctgg aaagagaaga      1560
     gatgagagtg aatacattca taaatctgaa atagaaggtt atatccgaaa ttacctgagt      1620
     cagatgtatg gtacagcttc tagtgctccg gcagtcaacc aacccgtggt tcaaaacatc      1680
     gttgatcagt tcgctagctt gcaaatgcat actgaaaatg ctcctcgagt gcatcacccg      1740
     catccaatca accaggctaa tcaagtgcct aagttgagtc ttgatcctcc gttgcagtta      1800
     ggaggagatc gaagagaaat ggatggacct gtgagatcgc caagaataca aacaccgtgg      1860
     attaatgagg gagttcaaaa tatgtccacc agaccagtct cgagaacacc attcatagct      1920
     gcaccacccc aaaatctaag aatatcttcc ccttgggtaa atccgaacaa ctcgtttagg      1980
     acgagactgg cacatcagac ctgtaacata atcgaaaaat ggccaaaatt ttcgggagat      2040
     tcgaattctg taccagttgt tgattttcta cgccaattgg aaatattgag tcgttcgtat      2100
     cagattacaa accaggagct gcgtatgcat gcgcatcttc tttttaaaga tgacgcgtac      2160
     gtgtggttca cggcatacga tagcaagatg gatacgtggg aaaccctctt gacctacctc      2220
     aaaatgcgct acgataaccc aaacagggat cgttatatca aggaagaaat gcgtaaccgg      2280
     aaacaaaagc cgaatgaact gtttagtgcg tatttaacgg atttagaagc aatgtcacaa      2340
     cgaatgatta agaaaatgac tgatgaagag aagtttgata tcattgttga gaacatgaag      2400
     ctgtcgtata aacgaagatt agcgttggaa ccggtgtact caattgagca tctggcacaa      2460
     ttgtgctata agttcgatgc tcttgaggga aatctgtata atcttcgtac cgctaacaaa      2520
     ccaaaagtgt taaaccaaat caatgtggag gatgagtact tcgacgagtt agtagatggt      2580
     gatgtagcag agcttttcgc tatccagcgt aataaaaatt tgaagccagt agcaaggtta      2640
     cccctcaaag aatcggtaag aaagagtaca gaggaaagtt tgtgttggaa ttgtcgggaa      2700
     actggacacc tttggcgaga ttgtgaccaa cgtaaaatga ttttctgtca catttgcgga      2760
     aatcccgaga ccacagcata tcagtgtcct cagaatcaca atctgcggcc gaaaggacct      2820
     tctgtttcaa aaaacgacta aaatccgaga atttcgggaa cgattctcag gagatgtcta      2880
     atgaaatagt tccccaacct aacttccaat acttcagcca aaactacagc ataactacca      2940
     aatttcgacg atgcccgcac cttcaggtaa gaattttgga tgaggagatt gaaggactag      3000
     cagataccgg tgccggggtg tctataataa gctctctagc cttgatagag aaacttggcc      3060
     ttcaaataca acgctgcaat gtcaagatcc gtaccgcaga tagtaccgaa tatacttgct      3120
     tgggttatgt caatgtgccg ttcacatatc atgatcaaac gaaagttatt ccgactataa      3180
     ttgtgccgca agtgtcaaag attttgatat taggcatgga cttcttgaat gctttcaatt      3240
     tcagactcgt agttacgaca aattcagaac ctcaagaaat tcaaaattcg ggagatgaag      3300
     aagaagccgt tgacgctctg ttaatagaag acttcaacgg tgataatgat caaatatgtt      3360
     ttgaaatagt ccccgaagag attccgaaac ctagctctct taatccagag acagacgaaa      3420
     gtttagaaat gcctacgatt gaagttcctc agcaaacgat ccatagccct gctgatctgg      3480
     ttaccgaaca cgagttatcg gcaaaagaac gtcaggaatt gttcgaggca ataaggatac      3540
     tacccgcaac tgcagacgga catctaggga gaaccagtgt cttaaagcat agtatcgagt      3600
     tgcttcctgg agcacaacct cgtaaaatcc caaactaccg ttggtctccg accgttgaga      3660
     aggtgattga cgaagaaatt cagaggatgt taaaccttgg agttatagag gagtgtaccg      3720
     gacctgttga ctttatcaat ccattactgc ctgtgaaaaa gtcgaatggc aaatggagaa      3780
     tttgcttaga ttctcggaaa ctgaattctt gtacgaagcg tgacgacttt ccgtttccta      3840
     atatgctagg aattttacaa agaatacaga aatctaagta tttcactgcc attgatctgt      3900
     cagaatcata ttaccaggtt ggtttggatg agagctctaa gaataaaaca gcatttcgta      3960
     cgaacaaagg actctaccga tttgtagtta tgccttttgg cctcaccaat gctccagcta      4020
     ccatggcacg attaatgtcg aaagttttag gccacgacct ggaacctttc gtttatgttt      4080
     atcttgatga cataatcatc atttccaagt cgtttgagca ccactgtcag ctaataagaa      4140
     tcgtggctcg gcgtttgcag caagctggct tgacgatcaa tctacagaag tcaaaattct      4200
     gtcagaaaag gattcggtat ctcggatatg tactttcgga ggacggcctc tcaatggatg      4260
     cgtcaaaaat acagcccatc attgattatg cgattcctca gacggttaaa gatgtgagaa      4320
     ggctcttagg actcgctggc ttctatcaga aatttatacg aaactattcg gaaatcacga      4380
     ctccgataac gaatcttctc aaaaaggacc gtaaaaaatt tcattggact gaagaagcaa      4440
     acgtagcgtt tgagaaattg aaaaacgctc taatttccgc accgatactt tcaaaccccg      4500
     atttccgttt accttttata atcgagacag acagttcgga tactgccata ggtgccgtat      4560
     tagtccaagt tcaggaaggc gaacgcaaga ctatagcgta tttttcaaag aaactatcca      4620
     gtacgcagag gagatatagt gcaacagaaa gagaatgctt ggcagtgctc cttagcattg      4680
     agaattttaa gcactttgtg gagggcagtc agttcgtcgt ccagacagac gccatgagtc      4740
     tgactttcct taaaaccatg tccatagaat cgaaatcacc gcgtattgcc aggtgggcac      4800
     taaaactgtc aaaatatgac attacgctgc agtataagaa agggtcggaa aatattcctg      4860
     ccgactgtct ttccaggagc gtgaatcacg ttgatgtaga cctaccagat ccatacattg      4920
     ctggtttgaa gtctcaaatt gaaaagtttc ctgagcgttt ttcggatttc aagatatccg      4980
     atgaaaaagt gtacaagtat gttaccaact ccgctacaat cgaagatccg tcttacaaat      5040
     ggaaacatgt agtaccacta cgtgatagaa tcaacgtagt caaagaaatc catgaccaag      5100
     cacatttggg ctaccttaaa accttggcta aagtccgcga acgacattat tggccaagaa      5160
     tgtcttcgga tatcaaaaga ttttgttctt catgtcagat ctgcaaggag tcgaaaacac      5220
     ccaatgtgaa tgtgcgacct gtttgtggaa aacccaaatt atgcagtcga ccgtgggaaa      5280
     tgatatcact tgatttccta ggaccatatc cacgatcaaa gaaaggaaac gtctggatat      5340
     tggtcgtgtg tgacttcttc tcgaagtttg tcctcgtaca atgtctccgt accgcaacag      5400
     ctcccgctgt gtgtacgttc cttgagacta acgtatttac cttattcgga acaccatcag      5460
     tatgcatatc agataatgca caagtattca agtcaggact gatccagaaa ctccttgaga      5520
     agtatggtgt gtcacattgg aaccttgctg tttaccatcc aagtcccaac ccaacagaac      5580
     gtgtgaatcg agtgatagtg acggcgatta gatgcgccct caatcaacag acaagtcaca      5640
     aggactggga cgagtccatt cataccatcg ctatggctat cagaaacagc gtacacgata      5700
     gtacaggcta tacgccgtac tttgtaaact ttgggagaaa tatgattagc aatggacaag      5760
     aatatgaaca aattcgcgat ttaggagatg ggggtaatta tgaaccaccg cagttgaacg      5820
     aaaacatgcg aaagctattc gaaatcgttc gtaggaatct ccaaaaggcc tacgagaaat      5880
     attcctactc ctataacctc agagctaata cgcgtcatca cttccaaaag ggtgaaataa      5940
     tctatagaaa acatgtaaat ctgtcagaca aatcgaaaga tttcgtggga aagttcggta      6000
     cgaaattctc taaggcgaga atccgcgaaa agctaggtac taatacatac attttggaag      6060
     atctggatgg tcgtcgaata ccagggacct tccatggttc attcctgaaa aaatcctaaa      6120
     gtaccaccag atcgtgaact attggaaact ataacattag ctatgacggc gcacacgcct      6180
     gttgcgcata aacaaatgaa cattcaatgc caaaagaaaa actccttctg aggtgcataa      6240
     ggcagcagtc caacgttcga gatgttcttc gatttcctca cgttgttgac gcaaactcac      6300
     tttgagttaa acaccagcta agacggcgta attgcctatt gcgcataaac aaagtatcag      6360
     caatgatgaa aaaactcctt ttgaggtgga aagggcaacc gtccaacgtt cgagatgttc      6420
     tatgatttcc tcacgttgta gacaaacttg attgaccata aaaacaagct atgactgtac      6480
     tacactcccg ggtagtacat aaaccactaa ttagaaaact cccaagatac acttctgtgg      6540
     tgctacggtg taataacgat tcgagatgtc cttgtgtttc ctcgttcgac aatgggaatc      6600
     acccatttga gaatcaaaaa gcgatttcgt tggagcataa atccaattgg aattgaatga      6660
     ggtgctggaa tttactcgca ctaagtacac agctatgtag aagtcacgat agagcttgga      6720
     ccacgaacat actcataaaa cactcataga ggtaacaaac cttacaggtg aaacggtgct      6780
     ggttgagtgt ccaataccta gattcagttc gttccgacct cccagtgatc cgaagtaacc      6840
     agattcgtgt tttgttgcgt aatcgttttt gtcctacaag aaaaaaaaat atgtttgttt      6900
     tggttgttct agtcggtcga agagaactgc aaatacatac cagctatagt aatccgccta      6960
     cgacaatcac aatcacaata tccatagtag tccgcaatag cccggtttag tttttcaata      7020
     gtttctagtt tatactttat tatcactaat taatttccaa tcacatccat ttgaatcaag      7080
     cattgttttg tttttcttaa ctcgatccgt ttgacagttc tcgcgattat ctctttagtt      7140
     cccgttcgta aaatttgttc gtgtatgtgt tcgtgaaacg ttcggtaacg ctatgtgaat      7200
     atgcacggaa aatagggcgt gtttgatttt tagtatgatt tatggaatga gtgagttagg      7260
     gaatagttta atattagata gaaaaaaatg tccagacatt tctggagtta cattcggtcg      7320
     gtcggtaaat caatatccaa atatttttgg agtaattttt ttcaacagtt gttgaatttc      7380
     gattaggtta tatttcggta tggataaaac aaatttccaa atatgtttgg agtacgaaaa      7440
     aaatcggtat cttaaataac gcttaggtaa tagatatgtg tccaattgtt attggagtat      7500
     ttcggtttag aataagtcgt aagtttggat gagaatagga atgagttgaa tatgaagttg      7560
     gctaaacata gaatgatgaa tctcttagtt ggaccacata gttgtctttg atgtttttgt      7620
     tgagtacata atattagctt gattaaatgt tttgttgttg agaattagtt atgttttgtc      7680
     aagagtaaaa attttgaaaa tttttaattt tcaaaatttt caaaatcagt gtaagcaaa       7739
//
ID   Gypsy-55_AA-LTR repbase;    DNA;    INV; 1731 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_AA_;
KW   Gypsy-55_AA-I; Gypsy-55_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1731
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 3598695 3596965.
XX
SQ   Sequence 1731 BP; 494 A; 303 C; 373 G; 561 T; 0 other;
     tgtaaaatat gaatctgttc cgtttgtaaa aatctttaaa tattttgtgt catcttaaaa        60
     atgacaacac atttctttcc gtgtagcaaa tacaactaca gctacaagtg tatctctctt       120
     tttatgtgtg ctgccatctg ttagtcgttt tatctctgta gaaatatttc ggcatgtgca       180
     aataaattga agctcgcaag taaaagaaat tgcataattg aaggcgcaac gatgaaattg       240
     agcaaattgc gtcgtaggaa ttttccactg acttctatag aatttaggca gccatactat       300
     ttggaaatgg aaaattactg gtaaaactct cgctctccag aactgaccaa tggaaaaaga       360
     ggttttaaac ccattgtagt ccattgggta gtaattgcgt cttaatttag aggttctaac       420
     cacttcgaat cgcgctcgtc atttcatatt ggtggagtac gtgatagtgt tcacatgtga       480
     atttcactgt ggaaattatt attggaacgc aagttaagct ttggaaagta tttgaaattt       540
     aatttaaagt gtgtaacagt taactaaatt cgaagtaagt ttcgcgagtg taatttaaac       600
     catattttaa ttaatttgaa tgttttattt taaagctgaa tttaaaaagt tcgttaggaa       660
     tttggaacaa attgataaaa tcgtttgaaa taggaaggac aaatcagtaa ggtaagcttt       720
     aatgcatttt cggtggattt aagtgaatta atgaagataa ctgcgttgtt caggcgtgtc       780
     aggcccaaca acgtgggcgg ccaatctagg cttaatcagg ttagtctagg gtcatcttgg       840
     ctaatctagg ccacacgacg cgcaattgag ctcaggccca ctccgacaag tgggatagtt       900
     tttccgatac tacggccaga gctttcgtgt ggaaatacgg tccaatcttc gagtggtggt       960
     tgtcgaggat caccacgtga caactcggtt cgtcaagtgt gaagcataga gcgacgtcca      1020
     taaagctctc tccaccgaag cccggggacg cctatacccc gatgattgag ctcacacacg      1080
     agttgaggta atttgaattt cgaccgttca agcgtctgac gcctacccaa tcgacgtagc      1140
     aaagacaccg tccagttggc atccgtcgtt ggagcatcgc ctaggaaaca ggttagatgt      1200
     atcgctaggg tgtgtgaacc aattgtagac accttattaa attcgctacg aatgaacgtg      1260
     acgtcacaaa aacagttagg gtttgccttg gctaatgaaa tagaatcgaa cgtgaataaa      1320
     attctgaact aaggcttttg tgaaactttt taaattctat tttgttttct ttttatttat      1380
     tatcgtataa attttgaatt tttggattac ttcgagttta ggtttgactt caccaaactc      1440
     ggtcgcctat tgttggaatt tgtcggagtt gttgaatctt tagttgagat tacttttatt      1500
     accatttagt tttggatagc gttttctgta ttttaaattc ttttttccat cttccattcg      1560
     gttaattggc aattctgttg ggtcaaagtg gaatttcagt cctggattat aactgttggc      1620
     ctgccctgag gaggcagtct catgccggga tatttgaaca gagttaacgg tcctttctcg      1680
     aaaggtggcg cttaagctgt tagctttatc ggaacagagc agaacgttac a               1731
//
ID   Gypsy-55_AnFu-I repbase;    DNA;    INV; 4693 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4693
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2939-2939 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..4680
FT                 /product="Gypsy-55_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEEEQRRFSQQFEVAGTAFPSSGHGQPILPNAAPLDH
FT                 HLGAAPIQHPPSLSIASPNHHPPSLSMPSTSQYPPPQSNAPYNGEPSMLQL
FT                 IQLMQQFMAKLEQQQPVSQPQIAAQHHPVSEPQMASEPQQQQQGGPSNPEQ
FT                 ILDSLARNITEFHFEADVGITFEKWHSRYEDLFSRDAARIDDAAKVRLLLR
FT                 KLGPLEHERYVNYILPRNPRDFTLEATVERLKSLFGKSESLLSKRHKCMQL
FT                 VKTKAEDFLEYACRVNRACEDFKLARLTEEQFKCLIFVCGLKEECDKDFRV
FT                 KILTRIERRADITLEQISEECNRISNLKKENAMIGGGTEERVLVVKNGERS
FT                 HDSLNGKGSRSRRVYRDDRSRSDKPSNACWLCGGMHWVKDCPKSSQKCRKC
FT                 GEAGHGEDRCRKQKPRAGRRRYHPSRFTRTVRVCSVRASRKFVQISINGVS
FT                 IRLQLDTGSDISIIGQTAWENLGKPSLVKPTVSAKTASNERLKLLGEFEAD
FT                 ITICDTTKPAIIRVAQVDLLLLGADLVDRFALGSVPMDKFCAKISTNTNIP
FT                 KALQDSFPEVFSGTGLCKKARIKLQLKENCSPVFRPRRPVSYAMQPIVEEE
FT                 LDRLVKMNVITPVDYSDWAAPIVVVRKSSGKIRICGDYSTGLNDALQPHEY
FT                 PLPLPDDIFAKLAHCVVFSKIDLSDAFLQVEIEERYRPFLTINTHRGLYLY
FT                 NRLPPGIKIAPAAFQQIMDAMLAGLRDTSGYMDDVVIGGKTEKDHDDNLRK
FT                 VLQRIKEFGFTIKAEKCAFKMHQIEYLGHIIDRAGLRPNPKKIEAIVKLPA
FT                 PTNVNEVRSFLGAINYYGKFVPRMRDLRYPLDRLLVNEGQFVWTEQCEKSF
FT                 NKFKDILKSNLLLTHYDPRAEIVVAADASSVGLGATISHKFADGSIKVVQH
FT                 ASRALTKAEESYSQIDREGLAIIFAVTRFHKMLFGRHFRLQTDHRPLLQIF
FT                 GSKKGIPVYTANRLQRFALTLQLYDFEIEYIPTDKFGNADLLSRLISKHAK
FT                 PEPEYMIASIQLEEVVSSVAIQSLKQFPIRFREVAAATENDALLREVRRYV
FT                 LAGWPRNTTYGAELARFYSRKEALTTVGGCILFGERVVVPAVLQKRCLTQL
FT                 HQGHPGIQRMKGIARSFVYWPSLDNDIADCVATCDACQAAAKSPRSEAPSY
FT                 WPKPSGPWHRVHIDYAGPVDGDYFLVVIDAFSKWPEIVKTASITSSSTISI
FT                 LRGIFARFGPPVTLISDNGTQFTSEVFKEFCERNGIEHIRTPPFHPQSNGQ
FT                 AERFVDTFKRALRKIRVGTATLQESLDLFLQTYRSTPNPVLDQRTPAEIML
FT                 GRRSRTIHHLLRPPAASEATTSNNFRTWQPGDLIYAKMFRMNSWSWAPGRI
FT                 VRRVGHVIYEIVTSDQRRHRRHVNQLRRRIADPSDQAEPDQQQLPLHVLLD
FT                 EWDLPHHSSRESSCSSPPTTTQPAAPASSPAAPARAETQQTPASSLAAPAR
FT                 IEENTTRASSLTAPAEQQAPQALATIDSNIHQQARLPRRSSRPRRMPRRFD
FT                 TYQLT"
XX
SQ   Sequence 4693 BP; 1286 A; 1155 C; 1211 G; 1040 T; 1 other;
     gtggcgacga gaaaaaaaaa aaagtaacta agaacgcgta gtgcaaacaa aaaaaaagag        60
     aaaattccgt tcccacgtaa acgccgtcgt aaggacacga gcctggggga ctccgaaatg       120
     gaggaagaac agcgtcgttt ctcgcaacag ttcgaggttg cgggtaccgc gtttccatcg       180
     tcagggcatg gtcagcccat cctgccgaac gcagcgccgt tggatcacca tctaggagca       240
     gcgccaatcc agcatccgcc atcgctctcg atagcgtccc cgaaccatca tccgccatcg       300
     ctctcaatgc cgtctacaag ccagtatccg ccgccgcagt cgaacgcgcc ttataacggt       360
     gagccctcta tgttacaatt aatccagctt atgcagcagt ttatggccaa gttggagcag       420
     cagcagccgg tatcacaacc gcagattgca gctcagcatc atccggtatc agaaccacag       480
     atggcatcag agccacagca gcagcaacaa gggggcccat ccaatccgga acaaatcctt       540
     gactcgttgg cgagaaacat caccgaattc cacttcgaag ccgacgtcgg tataacgttc       600
     gagaagtggc actcgcgcta cgaagatttg ttcagcaggg acgctgcaag gattgacgat       660
     gcagcgaagg tgagattgct cttgcggaag ctgggcccat tggagcacga aaggtatgtg       720
     aattatatcc taccccgtaa tccgcgtgat tttacactcg aggcaactgt agagcggctg       780
     aaatctttat tcgggaagtc ggaatcgctt ttaagtaagc gccacaaatg tatgcagctt       840
     gtgaagacca aagcagaaga tttcctcgaa tacgcatgtc gcgtgaatcg ggcgtgcgag       900
     gattttaaac tagcccgctt gaccgaggag caatttaagt gcttaatttt tgtatgcggt       960
     ttgaaagagg aatgcgataa agactttcga gtcaaaatac taactcgaat tgaacggcgg      1020
     gctgacataa cattagagca gatatccgaa gagtgtaacc gcatttctaa tttaaagaag      1080
     gaaaatgcga tgatcggtgg ggggacggaa gagcgtgtgc tggtagtaaa aaatggagag      1140
     cgcagccatg acagtttgaa cgggaaagga tcgcgctcgc gtcgcgtgta tcgcgatgac      1200
     cggtcaagga gcgacaagcc aagtaacgct tgttggctat gcggtggcat gcattgggtg      1260
     aaggattgtc cgaaatctag tcagaaatgt cgaaaatgcg gcgaagctgg tcatggagaa      1320
     gatcgctgcc gcaagcaaaa gcctcgtgcg ggtcgaagaa gataccaccc atcgcgtttt      1380
     accagaaccg tgcgagtgtg cagtgtacga gccagtcgta aatttgtaca aatctccatc      1440
     aatggagtga gcatccgatt gcagttagac actggttcag atatttccat catagggcag      1500
     actgcatggg aaaatttagg gaagccatca ttggtgaagc caactgtgag tgcaaaaacc      1560
     gcttctaacg agagactgaa gctgctgggc gagttcgaag cagatatcac aatatgcgat      1620
     actaccaaac cggcgatcat ccgcgtggcc caggtggact tgcttttact gggagcagac      1680
     ttggtagatc gttttgctct tggttccgtt cccatggaca aattttgcgc caaaatttcg      1740
     accaatacga atattccgaa agcgttgcag gatagttttc cggaagtgtt tagtggaaca      1800
     ggcctttgta agaaagcgcg gatcaagctg cagcttaagg aaaattgcag cccagttttc      1860
     cgtccaaggc gaccggtctc ttacgcaatg cagcctatag ttgaggaaga actggaccgg      1920
     ttggtaaaga tgaatgtcat aacgcctgtc gactattcag attgggcggc cccgattgta      1980
     gttgtacgca aaagcagtgg caaaattcga atatgtggag actattcgac cgggttaaac      2040
     gatgcgttgc aaccgcatga atacccgctg ccactgccag atgatatttt tgcgaagcta      2100
     gcacattgcg tagtgtttag caagattgat ttatcggatg cattcttgca ggtcgaaatt      2160
     gaggagcgtt acagaccctt tttgacgata aacacgcatc gaggtcttta cttgtacaat      2220
     cgtttacctc ccggaataaa aatagcacca gccgcatttc agcaaatcat ggatgcgatg      2280
     cttgccgggt tgcgcgacac gtctggttat atggacgacg ttgtcatcgg aggcaagact      2340
     gaaaaagatc acgatgataa cctacgcaag gtgcttcagc gtattaaaga atttggattt      2400
     accatcaagg ccgaaaaatg tgcattcaag atgcatcaaa tcgagtacct cggacacatc      2460
     attgaccgtg caggtctccg gccaaatcca aagaagatcg aagccattgt waagctgcct      2520
     gcgccgacta atgtgaatga agttcgctca tttttaggcg ctatcaacta ctacggcaaa      2580
     tttgttccta ggatgcggga tttgaggtac cccctggaca gattattagt aaacgaaggt      2640
     caatttgttt ggacagagca gtgcgaaaaa tcttttaaca aattcaaaga catactaaaa      2700
     tcgaaccttc tgctaacgca ctatgaccct agagccgaaa ttgtagtagc agcggacgcc      2760
     tcctccgtgg gacttggagc caccattagc cataaattcg cggatggatc gataaaggtg      2820
     gtgcagcacg cgtcccgcgc cctaacaaaa gcagaagaat cttacagtca aatagaccgc      2880
     gagggactgg caatcatatt tgcggtaaca cgtttccaca aaatgctgtt cggcaggcat      2940
     ttccgcctgc aaaccgacca taggccattg ctgcagatct ttggatcaaa aaagggcatt      3000
     cccgtatata ccgctaatcg attgcaacgg ttcgcgttaa cactccagtt gtacgatttc      3060
     gagatcgagt acataccaac ggacaaattc gggaatgcag atctattatc gcgtctcatc      3120
     agcaagcacg caaagccgga accggagtac atgatcgcga gtatccagct cgaagaggtt      3180
     gtaagttccg tagccataca gtcgctaaaa caattcccta tccgttttag agaagttgca      3240
     gctgctacgg aaaacgatgc tttactgcgt gaagtacgtc ggtacgtcct ggcgggttgg      3300
     cctcgaaaca ctacctatgg tgcggaattg gcccgctttt acagccggaa ggaagcactt      3360
     acgaccgtcg gtgggtgcat tcttttcgga gagagggtgg tggttcctgc tgttttgcag      3420
     aaaagatgct tgacccagct gcatcaagga catccgggca tccagcggat gaaaggtatc      3480
     gcgcgcagtt tcgtctactg gccatcattg gacaacgaca tcgccgattg cgtcgcaacc      3540
     tgtgatgcgt gccaagctgc agccaaatcc cctcgatcgg aagcaccatc atactggcca      3600
     aaaccatctg gtccttggca ccgggtccat atcgactacg ctggccccgt ggatggtgac      3660
     tacttcctgg ttgtaataga tgccttctct aagtggcccg aaatagtaaa aacggcaagt      3720
     attacctcat cgtctacgat ttcaatcttg cgaggaatat ttgctaggtt tggaccgccg      3780
     gtcactttaa tcagcgacaa tggaacccag ttcaccagtg aagttttcaa ggagttctgc      3840
     gaacgtaacg gtatcgagca catccggacc ccgccgtttc atcctcaatc gaacggccaa      3900
     gctgagcgtt tcgtggacac ctttaagcga gcgttgcgaa aaatacgagt gggaactgca      3960
     acgcttcaag agtctttgga tctgtttctg caaacgtacc gatccacgcc aaatcctgtg      4020
     ttagatcaac gcacccccgc tgagattatg ttgggaagaa gaagcagaac gattcatcat      4080
     ctattgcggc ctccagcagc atcggaggct acgacgtcga acaactttcg tacatggcag      4140
     ccgggtgacc tcatttatgc gaagatgttc cggatgaact cttggagctg ggctcctggg      4200
     agaatcgttc gcagagtagg ccatgtaatc tacgagatag ttacgtcgga ccagcgaaga      4260
     catcgacggc acgtaaatca gctccgccgt cgtattgctg acccatcgga tcaggccgag      4320
     ccggatcaac agcagctgcc tcttcatgtc ctgttggatg aatgggactt gccgcatcat      4380
     tcgtcccgtg agtcatcgtg ctcttcgccg ccaaccacaa cgcagccagc ggcgccagca      4440
     tcatcgccag cagcaccggc acgggcagag acgcaacaaa cgccagcatc atcgctagca      4500
     gcaccggcac gaatagagga gaatacaacg agagcatcat cgctaacagc gccagcagag      4560
     caacaggcgc cgcaagcact cgcgaccatc gacagcaaca tccatcagca ggcacggcta      4620
     ccacgacgtt cttctaggcc tagaagaatg cctcgtaggt tcgacacgta ccagctgact      4680
     taaaaggggg agg                                                         4693
//
ID   Gypsy-55_AnFu-LTR repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-252
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2867-2867 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 252 BP; 57 A; 53 C; 63 G; 79 T; 0 other;
     tgttgtgtgc gggtgtatta accgtgggcg ctaagcgtaa cgccgttact cggtcctgtc        60
     actgcgtgac aggacacgat gtatcgcttc ggcagttatc ggcttgcgca ccatcgttta       120
     gtctcttcat cgccggccgc caaagcgaca agtcgtggtt gtcctgtaat atacgttgta       180
     ataaatgtgt tgatatatta ttctaatttg tgacgtcagt gtgtttttaa atactttgac       240
     gagaacacaa aa                                                           252
//
ID   Gypsy-55_CQ-I repbase;    DNA;    INV; 6845 BP.
XX
AC   AAWU01036466;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_CQ_;
KW   Gypsy-55_CQ-LTR; Gypsy-55_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6845
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 489-489 (2011).
XX
DR   Genome; AAWU01036466; Positions    8232   15076.
XX
CC   Positions [4685-5161] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           468..2423
FT                 /product="Gypsy-55_CQ-I_2p"
FT                 /translation="MRQELEMHYRSMDVKHLLVDEVEHELLIRQEEFSGGD
FT                 TLDAKRRKLRGVLKAQKESNNFDVLLVSEKYCEGEYEQVVTKLDHIRMMLE
FT                 NKKVKKDELPPYKTRLIHLLFRLVRLKESGFDTLGSVREAKKLYIQHFTEW
FT                 SSDPGVVKDVTAGTLLNISKAHDKLNKQTGKESDSWSDVPTGGRNRTSTPK
FT                 AKNKKKKQERSIASKKGKKEDPNPTPQLVDMVMRQVQEYLDRRLSKLRLSD
FT                 HEDWVTDSEYDQLKKKKKSKKLKTLKKVVPLRSRTVMPKKTKPKFVSREDK
FT                 PGRKRSSILFTSGDDTEDFEADSDTSSSSEETDFYRNSKPLKRRPRPVADW
FT                 KLKYDGKDDGKLLNKFLAEVEFMAEAEHLSKKDLFSEAIHLFSGEVRNWYM
FT                 EGKRNKEFRSWKELITELKLEYQPPDMDYYYEQQATLRRQRKSEKFSDYYY
FT                 AIKEIFGYMSKPPPPGRKFDIVYRNLRSDYRNALVVVKEIKNLSTLKFWGR
FT                 KLDAANWYLYRGKENETGQKSAHVNEVSERPSQKASFPPSNKGWKPKDMVG
FT                 KLNWNQNQGSSSQPNQKFGKPQTKNPSQSAPSPAPEQSNSSRGDLEKRVAE
FT                 YRVPDGSTCFNCRGKYHHFGSCLKQKEIFCFVCGFHDFKSENCPYCAKNGR
FT                 KST"
FT   CDS           2546..5527
FT                 /product="Gypsy-55_CQ-I_1p"
FT                 /translation="MGLRVVGLLDSGAQVSILGAGAEHLLRKLNLREFGSE
FT                 TKLFSAGGDRLEVSGYVHLPMTFNGTTKLVTTLIAPSLKRQMVLGMNFWRQ
FT                 FGIEPTVPNTSEMLVEEVMLEQQEEVTLNPEQLAELEEIKKEFKVFVEGEV
FT                 LGTTPFINHKIEFLEEFQHADPVRLNPYPWSPEVQKHVNCELDKWIEAGVV
FT                 ERSTSDWALLIVPVVKKSEDGEAQMKVRMCLDARKLNERTRRDAYPLPHQD
FT                 RILGRLGKSRYLSTIDLSKAFWQVPLDQESRKYTAFRVFGRGLFQFTRLPF
FT                 GLVNSPATLSRLMDQVLGYGELEPNVFVYLDDIVIANDTFEDHLRCLKEVV
FT                 ARLKAANLSVNMEKSKFCVSELPYLGFILSSDGIRPNPDKVEAIVNFERPS
FT                 SVRSLRRFLGMVNYYRRFIEGFSEVTAPLTDLLKGKPKVVQWNQAAEDAFI
FT                 ELKQRLISAPILANPNFELPFTVQTDASDSAIAGVLTQEQDGAEHVIAYFS
FT                 RKLTTPQRSWKAAEKEGLAAMEAIEKFRPYIEGTEFMLITDSSALSFIMNT
FT                 KWKSSSKLSRWSMILQQYAMTVRHRKGSENIVPDALSRAVELVEVETRDDW
FT                 YADLFKKVQKSPEDFVDYKIEEAKLYKLVSTPTDVLDYRFEWKLCLPTDLR
FT                 RPVLKAEHDDSMHPGYEKTIQRVKVKYYWPRMAAQCKKYVQSCLVCRQCKP
FT                 STVGKAPEMGNQRLTNKPFQILAIDFIQSLPRSKSGHCHLLVMLDLFSKWT
FT                 VLVPLRKIEAKEVCRIVEDCWMRRFGTPEVMISDNATTFVGKEFQALLRRR
FT                 GVQHWPNSRHHSQANPVERANRTINACLRTYMKEDQRVWDTKVMEVEEMMN
FT                 TTVHASTGMTPYRILYGHEKATEGSQHRLERDDQELSMGERDACRRKLNEK
FT                 VFKVVEDNLKKSYDKNLRTYNLRHKKFAPTYEVGQQVFKRNFQLSSAADRY
FT                 NAKYGPVYVPCVVVARRGTSSYELADENGRNLGVFSAAD"
XX
SQ   Sequence 6845 BP; 1978 A; 1343 C; 1796 G; 1728 T; 0 other;
     ataacaaatc gttaaagttg aacagaggat tagttaaaat tttattaaaa ttttcaaccc        60
     gagtgggagg agagtacaca aacaagttaa attgttgtgt atgatccaaa ttagtagccc       120
     tcactgagat tagcctacaa agaagtgtaa ttagactttt agtaagtggg agaatggtgg       180
     catttgagct cgaaatttaa atgaaagctg ttatttttgg ataaaaccac aacataaact       240
     attattaatc ttttgagagc tgaaggctaa atattagtac acaaaaaggt cctgaatggg       300
     aaaataaaac acataaacac caacattgat atttttatta tttacttaca taaatgtgtt       360
     agtttgtcat tgcgtttgcg tattttatct atttatttat ttattatttt aacttgttgc       420
     ttgtcttttg ttagaattaa acaataaaag tacttaaata cgtcacaatg agacaggaac       480
     tggaaatgca ctaccgttcc atggacgtga agcacctgtt ggttgatgaa gttgaacacg       540
     agttgttgat tcgtcaggaa gagttctcag gtggtgatac gttggatgct aagagacgca       600
     agctgcgcgg tgtcctaaaa gcccaaaaag aaagtaacaa ttttgatgtt ttgttggttt       660
     cggaaaagta ctgtgaggga gagtacgagc aggtcgttac aaagttagat catattcgca       720
     tgatgttaga gaacaagaaa gtgaagaaag acgaactccc accgtacaaa actagattaa       780
     ttcatttgtt gttccgtctg gtacgtttga aggaatcggg ttttgacacg ttaggatcag       840
     ttagagaagc caagaagctg tacatacaac attttacgga atggtcatct gatccaggtg       900
     tggtgaaaga tgttacagcg ggaacgttgt taaatatcag caaggctcat gataagttga       960
     acaagcaaac tggtaaggag tcggattctt ggagcgacgt gccgactgga gggagaaaca      1020
     gaacaagtac gcccaaagcc aagaataaaa agaagaaaca ggaaaggtcg atcgcgtcaa      1080
     aaaagggcaa gaaggaggat ccgaatccca cacctcagtt ggtggacatg gtgatgagac      1140
     aggtgcaaga gtatcttgat cgtcgtttga gtaaactgag gctgagcgat cacgaagatt      1200
     gggtgaccga cagcgaatat gatcagctta agaagaagaa gaaatctaag aagctaaaaa      1260
     ctttgaagaa ggttgttcct cttaggtcaa ggactgtaat gccgaagaaa acgaagccga      1320
     aatttgtgtc acgggaggat aaaccgggaa ggaagcgttc atcaatactg tttactagtg      1380
     gagacgacac cgaggatttc gaagcagact ctgatacatc aagtagttcg gaggaaacag      1440
     atttctaccg caacagcaaa cccttgaagc gtagacctcg tccagttgcc gattggaagc      1500
     tgaagtacga tggtaaagat gatgggaaac tcctgaacaa gttccttgct gaggtggagt      1560
     tcatggcgga agctgaacac ctcagtaaaa aggatctctt cagcgaggcc attcacttgt      1620
     tctccggaga agtccggaac tggtacatgg agggaaaacg caacaaggag ttcaggagct      1680
     ggaaagaatt gattaccgaa cttaaacttg agtatcagcc accggacatg gattactatt      1740
     atgagcagca ggctacgttg agacgtcaga ggaaatcaga gaagttttct gattattact      1800
     acgctatcaa ggagatcttt ggatacatgt caaagccacc gccacctggc cggaaattcg      1860
     acattgtgta ccgcaatttg cgatcggatt accggaacgc tttggtggtt gtaaaggaga      1920
     tcaaaaactt aagtacatta aagttttggg gacggaaatt ggatgcggcc aactggtatc      1980
     tctaccgagg caaggaaaat gagactggac agaagtcggc acatgttaac gaggttagcg      2040
     agagaccgtc tcaaaaggcg tcgtttccgc cgtccaacaa aggatggaag ccaaaggata      2100
     tggtagggaa gcttaattgg aaccagaacc agggttcgtc ttcacagcca aatcaaaagt      2160
     ttgggaaacc gcagaccaaa aatccatctc agagcgcgcc gtcgccagct ccagagcagt      2220
     ccaacagcag cagaggtgat ctggagaagc gggtcgcaga gtaccgcgtt cctgacgggt      2280
     cgacctgttt caattgtcgt ggtaaatacc atcattttgg gtcgtgtttg aagcagaaag      2340
     aaattttctg ttttgtttgt ggatttcacg acttcaaatc cgaaaactgt ccgtactgtg      2400
     caaaaaacgg ccgaaaatcg acgtaggagg tcgtcgaaca tcaggtcgaa aacctccaac      2460
     tgtgtttcta cccgctgaca ctgattgcgc tgagctgatc gtagaagtcg atggggataa      2520
     cagaccgttt gttgctgtag atgtaatggg tttgagggtg gtcggattat tggacagtgg      2580
     agctcaagtt tcaatacttg gagcaggagc agaacacctg ctcagaaagc tgaatcttcg      2640
     ggaatttggt tccgagacga agcttttctc tgcaggtggc gatcggctag aagtttcagg      2700
     atatgtccac ctccccatga cattcaacgg cacaacaaaa ttagttacta ccttgattgc      2760
     tccctcactt aagcggcaga tggttttggg tatgaatttc tggcgccagt ttggcataga      2820
     acccacggtg cccaatacct cggagatgct agttgaggag gtgatgttgg agcagcagga      2880
     agaagtaaca ctgaatccag aacagttggc agagttggag gagatcaaaa aggagtttaa      2940
     ggtgttcgtc gaaggtgagg ttctgggaac gacacctttc atcaatcaca aaattgagtt      3000
     tttggaagaa tttcagcatg ctgacccggt tcgactcaat ccgtatccgt ggtcgccgga      3060
     ggtccagaag catgttaact gtgagttgga caaatggatc gaagccggag tagtagagag      3120
     atcaacaagc gattgggcac tgctgatcgt gccagtcgta aagaagagtg aggacggaga      3180
     ggcgcaaatg aaggtgcgga tgtgtctgga cgctcgcaag ctgaacgaaa ggactcggag      3240
     ggacgcctac cctctaccac accaggaccg tattcttggg cgacttggta aatctcggta      3300
     cttatccacc attgaccttt ctaaggcctt ttggcaagta ccgttagatc aagaatcgcg      3360
     taagtacacg gcattccgag tgtttggtag agggctgttt cagttcaccc gactcccatt      3420
     tggtttggtc aatagtcctg cgactttgtc caggctcatg gaccaggtct tgggatacgg      3480
     tgaactggag ccgaatgtgt tcgtgtatct ggacgatatc gtcatcgcca acgacacatt      3540
     cgaggatcac ctccggtgtt taaaggaagt ggtcgcacgt ctgaaggccg cgaatttgtc      3600
     ggtcaacatg gagaagtcga agttttgcgt atcagaactt ccgtacctgg gcttcattct      3660
     ctccagcgat ggcattcggc ccaatcccga caaggtggag gcgatcgtca atttcgaacg      3720
     accgtcgtct gtccgttcac tccggagatt tttgggaatg gtaaattact atcgacgatt      3780
     tattgaaggc tttagtgagg ttaccgcacc attaacggac ttgctgaagg gtaaaccgaa      3840
     ggtggttcaa tggaaccaag ccgctgagga cgccttcatt gaattgaagc agcgattgat      3900
     ctcggcgccg attctggcga acccgaattt cgaactgccg ttcacggttc agacggatgc      3960
     aagcgacagt gccattgccg gagtgttgac ccaggagcag gatggagcag agcacgtgat      4020
     tgcctacttc tctcgcaagc ttacaactcc acaacgttcg tggaaagctg cggaaaagga      4080
     aggtctggcg gcgatggaag ctatcgagaa attccgaccg tacatcgagg gaaccgaatt      4140
     tatgctcatc accgactcat ccgccctgtc gttcatcatg aacacaaaat ggaagtcatc      4200
     gtcaaagctg agcaggtgga gtatgatctt gcagcaatac gcgatgacgg ttcggcaccg      4260
     caagggatca gagaacatag ttcccgatgc tctttcgcgg gcagtagaac tagtagaagt      4320
     ggaaactcgt gacgattggt atgctgacct gttcaagaag gtgcaaaaat ctcccgagga      4380
     tttcgtcgac tacaaaatcg aagaagctaa gctgtacaag ttggtctcga cgcccacgga      4440
     tgtgttagat tacaggttcg agtggaagct gtgtttacca acagacctgc gtcggccggt      4500
     cttaaaggcc gaacatgatg actcgatgca cccaggatat gagaaaacga ttcagcgcgt      4560
     aaaagtaaag tactactggc ctaggatggc ggctcagtgt aaaaagtacg ttcagtcctg      4620
     tttggtgtgt cgacagtgca aaccatcgac tgtgggcaag gcacctgaga tgggaaacca      4680
     gcgcctcacc aacaaaccct tccaaatcct agccattgac ttcattcaga gtcttcctcg      4740
     gagcaagagt ggtcattgcc atttgttagt gatgttagat ctcttttcaa aatggaccgt      4800
     acttgttccg ctacggaaga tcgaggcgaa ggaggtgtgc aggattgtgg aagattgttg      4860
     gatgagacgt tttggtacgc ccgaggtgat gatctccgac aatgcgacaa cttttgtagg      4920
     aaaagagttc caggcgttgc tccgtaggag gggagtacaa cattggccga actctaggca      4980
     ccatagccag gccaacccgg tagaaagggc caaccgcacg atcaacgcgt gtttgcggac      5040
     ctacatgaag gaagatcaac gtgtctggga cacgaaagtg atggaagtcg aagagatgat      5100
     gaacacgacc gttcacgcat cgaccggaat gaccccgtac cgcattctgt acggccacga      5160
     gaaggccacg gaaggaagcc agcatcgctt agaaagggat gaccaggagc tgtccatggg      5220
     tgagagggat gcatgccggc gtaagctgaa tgaaaaggtg tttaaggtag tcgaggacaa      5280
     cctgaaaaag agttacgaca agaacctacg aacctacaac ctaaggcata agaaatttgc      5340
     gccaacttac gaggtgggtc agcaggtgtt taagcgtaat ttccagttgt cgtcggctgc      5400
     ggatcggtat aacgccaagt acggtccagt gtatgttcct tgcgtcgtcg ttgcacggcg      5460
     tgggaccagt tcttacgagt tagctgacga gaatggtagg aaccttgggg tgttttccgc      5520
     agcggattag cgtcctgatg gttcggttgg ccagccggaa gtaacctaag aagtagaagc      5580
     ataagtatcc agaagcagag gtctcatgaa ctcaaggtac cagagattcg tgattcactc      5640
     gtggagctgt atgcagatgt caacagagcg gtcatcacga aaaggaggcc gtgagaaccc      5700
     atgatggagt aaatttgtcc tcatgtggtg acgatctcgg ccagtggtat aaaagaccgt      5760
     gttggtagtt gttggtagtt cactgttgtg gtcatcgagg ttagcccaca gcagcgatga      5820
     gtcatttgct gaagattggt tgagcgatga taacagacta ccgtgagtag tgagatgaag      5880
     cacgtgagat gaagaggcag cagtgagtga gctgattata ttatatccac ggcgctgaaa      5940
     gagaggaaga gagttatgac gtcattgatt tgatagactg tccggacggg ttagaataat      6000
     agcaggagat ctccttttgt agtttgtagc gtgaagaatt gtagtagtaa taagaagatg      6060
     catgcatgaa gaagagtagc gtagatggtc gtgaactgtc caatactgac cgtttgttta      6120
     aatttccaat aatcattccg cgtcttttgg tagagatctc ttaggtgaaa aatatgaaag      6180
     cagcttttaa tgcgcagaaa gcttgaatcc atgaatagga gcttggccaa agctcgcacc      6240
     taggaaaagc caggtaggcc acctggttgg atttcctgaa aatgattaga tttctttagc      6300
     tcaacatcat ttagatacag ttagatctac ttatcgtcat aaaccatcac aacatcccca      6360
     tctgataact caaccgtact atttctgttt tgtagactgg ttttaaattt gttaaattat      6420
     ttcacttttc gtttgtaatt tcttgtcgta ctaccgttca cgtccgcgcg ttgagagaaa      6480
     ctgaacgtac tctctttcgc ttacatttgg ttaggctgaa atgagaggta ctaaataatt      6540
     tgttttgaga gcagtaaaac tcaccactgg tgttaatgag agtcatactc gcagtataaa      6600
     gtcgcacgtg gccaattatg gcatatttca aacgaaattt agcttttagt tgccgagatt      6660
     ttaatgtgtt tatgttgtct tatataattt attcaaacat tagctgctac gcggacggat      6720
     gatttgtatt ttccgtatag ttctgctaca cttttcgtaa cttattgagg tttcattaca      6780
     atttttccaa ggtttaaata attgcactgt ttcccagtac aattattaat tgaagtgggg      6840
     gatag                                                                  6845
//
ID   Gypsy-55_CQ-LTR repbase;    DNA;    INV; 1301 BP.
XX
AC   AAWU01036466;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_CQ_;
KW   Gypsy-55_CQ-I; Gypsy-55_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1301
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 490-490 (2011).
XX
DR   Genome; AAWU01036466; Positions    6931    8231.
XX
SQ   Sequence 1301 BP; 362 A; 320 C; 290 G; 329 T; 0 other;
     tgtaaccggt tgttacagtc taacatcata aattcaatta actaaaatca ataaataaat        60
     aaatatggac attcacagat cttatgctat gtttagtagg gaattaggga atattaaaat       120
     aattgttaaa gagttagtag ggattgatta aaatggaaaa taaataatta aataaaaaca       180
     cataatttgt caacacactc tacaacacac cgtctcaggg ggaacaaagt cacagacaat       240
     gacggggttg tcggagtaca tcgtgttcgt cgatttgggg gtggaaagtg aaatgaggat       300
     tgacatctat cctgtgtgac gtcacgccgt gtcacaggcc ccaaaggctt aaagggatct       360
     gatttagact ggcaacggtc atttcaacgc aggctagtgc gcggtcctaa accgtttttg       420
     tggagctata aaagtgaagt gcagtgagag aaagagtggt ggcagatttt gctggagtat       480
     ctcaccccgt tcaggtacgc taaacacccc tatagtacgg ctctatagga cggctggtta       540
     ttttaaacat actaattaag tatggcctca cacgcacttc tttgtccttt aggacctttt       600
     gtgtgccgtt ttacggccat tttgcgatcc aagcacgccg cttggacgcc ccgatcgcgc       660
     acttctcggc ctggttttgt aagtgcggtg gagccgtcta ccacgtctta ccgtcaaaga       720
     gaaccacatt cgctcggacc agcgggtcct aatcccaaag gagcacgctc gggcctgatc       780
     ggctctaaac cccaaggagc gttgataccc ctctcggtgc aggccaaagt gggcaggtcc       840
     ccggccggcc gatcacgtca acgagggaag gcctgttgat ccctttagcc gagctccacc       900
     acaagaccac ccccaccacc ccaagcaccc ggaagttccg ggattccagt agcatcgcgg       960
     gcgcccgtcg atcagcagaa gctgatcaag cagtgcatcg acagcagtcc agcggtacgt      1020
     acagcagcag aaacatcccc cccccccaca ctacacttta caataaacac acactttaaa      1080
     tagattttcc ccgagttttc aataaatttt cctttgtcta cctgtaataa ctttgattat      1140
     ttttccacca acccatagcc caaagaattg tgtttgtcct agttcatcct cttaacgccg      1200
     ccgaccctgt gattaaatta agtccaggtt gtccgtaagc tagtgttggc aagatatctt      1260
     tttaaatggg taagtcctaa aagggtatta attggcgccc a                          1301
//
ID   Gypsy-55_DEl-I repbase;    DNA;    INV; 5695 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_DEl-I.
XX
NM   Gypsy-55_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5695
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 498-498 (2012).
XX
RN   [2]
RP   1-5695
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   [2]: termini determined and sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           807..2327
FT                 /product="Gypsy-55_DEl-I_1p"
FT                 /note="H2 subclass of RING (RING-H2) finger and
FT                 gag."
FT                 /translation="MPIQHSPERSLAPATNQNVCLICEKAMTDTQPCVMTI
FT                 CKHVFHKTCIDNRFHPDRENVCPSCLEKVVVKDLKVVVGNFSPEKNEDPSQ
FT                 GQNRRPITRSVNRLLELGASPRETELEQQERQQNVGQGIIPGTSNRGTRGN
FT                 TNNLDRGSYVRRGGRRGRHPRQYHRSEDNLNDDNWSQPDIELIVRETVMRM
FT                 MNSVSIRNVLSGQESQQQGRAASDDQSPRSQQISSHLATNKVADIIQKWGV
FT                 RFEGTSEGLSVEEFLYRMQVLTREHLNGDFVALSRNIHQLLVGKASSWFWR
FT                 FHKRVDNFDWEQFCFALRAQYKESRSITELREQIRARKQKPGESFDSFYES
FT                 ICKLMDKLSVHFEERELIELVQGNLLTDMKDRLLFEEIHSIGQLRRLVQKR
FT                 EHFLQDAGKSFRFSGKPKESALRVYEVDEYPLTETESEEQEKDISALQRLP
FT                 LKIICWNCDTAGHVWEDCLAERRVFCYGCGKPQVYKPNCLNCKNRSENRKA
FT                 GASTNQRVSQV"
FT   CDS           2270..5647
FT                 /product="Gypsy-55_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ESFGKPQGGGIHQPEGVPSVDNKQIDYSDNXKELENL
FT                 NAELKDLQPEILLSLEKKEESXEVQXAFRPYEERLRNYYSVRNRIFHEKKK
FT                 HKKRNTXRLKNYYVNLRNKQKKVVATIFQNRSDRRSYASVSFLNFTEWGLL
FT                 DTGANISCIGSDLALQDFSSFSGFKTIVSQVKTADAKPHQVSGILKVTMTY
FT                 EEKSQDIELYVIPTIAQRLILGIDFWRIFELAPKIIGCIENSQVESSQVED
FT                 SYPLNETQRQQLEAVMELFPNFAKQGLGRTSLIRHHIDVGKATPVKQRHYP
FT                 VSPAVEKVLYAEIDRMLELGAIEPSTSPWSSPIRMVIKPNKVRLCLDARKL
FT                 NEATKKDAYPLQSIEGIFSRLPKANIISKLDLKDAYWQIQLTEEAKPLTAF
FT                 TVPGRALYQFVVMPFGLCNAPSTMCRLMDDLIPPDLRHCVFGYLDDLCVVT
FT                 EDFQTHLSVLIRIADQFRKANLTLNXSKSHFCVTKVNYLGYIIGEGGITTD
FT                 PAKISCILNWPSPRNIKQVRGFLGVCGWYRRXISNFAELTFPITEXLTKSK
FT                 PFKWSPEAQKAMDALKAKLTSAXVLHNPDFTKKFFLHCDASDFGIGSVLVQ
FT                 LSESGEERPIAFMSKKLSKAQRNYSVTERELLSVILSIEKFRCYLELQEFE
FT                 VITDHSSLIWLMRQQNVTGRLSRWIFRLQGFKFSTTHRKGKDNIVPDALSR
FT                 MCDNQIESIEIVGPEIDLESPSFNDAEYVELRMXVEANVDKFPDLRVHGKF
FT                 VYIXTEHPSGNTEQEANSWKLWVPEKLRAVAIWQAHDSVVSAHGGIQKTIE
FT                 RLRRNLFWPGLSKEVRNYINACEMCKQTKAPNQILRPPMGEQSVSLRPFQR
FT                 LYIDLLGPYPRSKRGYTGLLIVLDHFSRYHWLCPLKKGTTAVINKFLCERI
FT                 FCEFGVPETIISDNGSQFKAKEFEAMLTKWGIRHIYTALYSPQSNAAERVN
FT                 RSLIAAIRSYLRQDQTDWDLHLTSISSALRSALHQSIGCSPYKALFGFNMV
FT                 NHGSDYSLLKKLSLLEESTRLERVDQLALLREEIKRNSRKAYETNVKQYNL
FT                 RSRPVTYREGQEVFKRNYNLSNFSQNYSKKXAHSFSKCRIKKKLGNAFYLL
FT                 ETLAGKEIGTYHAKDIRS"
XX
SQ   Sequence 5695 BP; 1877 A; 1038 C; 1241 G; 1521 T; 18 other;
     taagttttgg cgcccaacgt ggggcagttt attgtttgct ttaatttaca aaggagataa        60
     tatatttagt cccaatttgc tagtgaaaaa aaaaaaaatc taaaataaca caaagtcttt       120
     tgcgttctgg tttctaggat atcgaatggg twagcgtgag ctgatttata tcgaccagag       180
     agaaggttag ggaatttttt taaatttgtt mataccatct taatgcattg atggacatct       240
     caaaataacg ttgctgaaat aaaacactca gtcaacatta gaacggaaag ccacaagatt       300
     cactagacat ttaagctcgg ttgcgtttcg atgaaattag ttagattttg ctacagcacc       360
     caaggtcaat atatttaata cgcatctgga tatagcaggt tcaagacagt ggatcaacac       420
     aaccgatggt aggcaatatt aggacaggga actgtagtag atacaactgt tgtcatcata       480
     atttttatgg gaaaagttgt gtttagcagg tattcatttt gcagtctcgc gattagctgg       540
     aatacaagaa gtatacgtaa gtgtgcattg tccgttaacc ccgaktggca aaacgttgaa       600
     ctaaagctag cattgctact catagataga ttcaatagcc agaatatttt aattaaatgc       660
     aatagtaata aacaaaacca aaaaccaaaa cagaaagagg aaattcgaaa ccaggtaaaa       720
     caaagatcaa atttttatat tcccaaaaag gtcaaagcaa agagaaaata aatttataga       780
     taaaaataca aagattaaac ctaaaaatgc caattcaaca ttctccagaa agaagcttag       840
     cgccagctac taatcaaaat gtgtgcttaa tttgcgaaaa ggcaatgact gatacgcagc       900
     catgcgtgat gactatttgc aagcatgtgt ttcataaaac ttgtattgac aacaggtttc       960
     atccggatag ggagaatgta tgcccctcct gtctggaaaa ggtggtggta aaagatttga      1020
     aagtggtggt aggaaatttc tccccggaga agaacgaaga cccaagtcaa ggacagaatc      1080
     gacgtccaat tactagatca gtgaatcggc tacttgaatt aggagcatca ccacgagaga      1140
     ccgaattgga acaacaggaa cggcaacaga acgttggtca aggaattatt cctggcacaa      1200
     gtaatagagg tactcggggt aacactaata atttggatag aggttcttat gtgcgaagag      1260
     gtggaagacg aggaagacac ccacgtcaat accatcggag cgaagacaat ttaaatgacg      1320
     ataattggtc gcagccagat attgagttga tagttaggga aacggtgatg agaatgatga      1380
     attcggtatc cattagaaac gtgttgagtg gacaggaaag tcaacagcag ggaagagcgg      1440
     cttctgatga ccaaagtccg aggtcccaac agatatcatc ccacctcgct accaataaag      1500
     tagccgatat cattcagaaa tggggtgtgc gttttgaagg tacttctgag gggttgtcgg      1560
     tagaagaatt tttataccga atgcaagttt tgactcgaga acatctcaat ggtgattttg      1620
     tagcactcag cagaaacatt catcagttgt tggtgggaaa agccagttct tggttttggc      1680
     gattccataa gcgagtagac aactttgact gggaacagtt ttgcttcgcc ctacgtgctc      1740
     aatataaaga aagtcgatcg atcacggagc tgcgcgaaca aattcgtgca cgtaaacaga      1800
     aacctggcga gtcctttgac tcattttacg aatccatttg taagctaatg gacaaactgt      1860
     ctgttcattt cgaggaaagg gaattaattg aactagtgca aggaaatttg cttactgata      1920
     tgaaagatag attactcttt gaggaaatac attccatcgg acagttgcgt cgattagtac      1980
     aaaagagaga acattttttg caagatgcgg gaaaatcatt tcgtttttcg ggaaagccca      2040
     aggagtccgc attgcgtgtg tatgaggtag acgagtatcc actgacagaa accgaaagcg      2100
     aagagcagga aaaggacatc tcagcgttgc aacgattacc cttaaagatc atttgttgga      2160
     attgcgatac agccggccat gtatgggaag actgtttagc agaacgtcgc gtgttttgct      2220
     acggatgcgg aaaaccgcaa gtatacaagc caaattgcct aaactgtaag aatcgttcgg      2280
     aaaaccgcaa ggcgggggca tccaccaacc agagggtgtc ccaagtgtag acaataagca      2340
     gattgattat tcagataata tkaaggaatt agaaaatttg aacgctgaat taaaagatct      2400
     tcagcccgag attttattga gtttagaaaa aaaggaagaa tccmgtgaag ttcaaamagc      2460
     gtttcggcca tatgaagaac ggcttagaaa ttattattca gtaagaaatc gtatttttca      2520
     tgaaaagaaa aagcacaaaa agaggaatac agwgcgcttg aaaaattatt atgttaattt      2580
     aaggaataag caaaagaagg tagtagctac catttttcag aataggtcgg atagaagaag      2640
     ttatgcaagt gtttcctttc tgaattttac agaatgggga ttgctggaca ccggagcaaa      2700
     tattagctgt ataggatcag acttagcttt gcaggatttt agtagttttt caggatttaa      2760
     aaccatagta tcacaagtta aaacagccga tgccaagccg catcaggtct ccggaatttt      2820
     aaaagtcacc atgacgtatg aggagaaatc acaagatatt gaactatatg tgattccgac      2880
     cattgcgcag agacttatct taggaatcga tttttggaga attttcgaat tggcacccaa      2940
     aataatagga tgcatagaaa attcgcaagt agagagttcg caggtcgaag attcctaccc      3000
     actaaatgag actcagcggc aacaattaga agcggtaatg gaattgtttc ctaattttgc      3060
     gaaacagggc ctaggtcgca catccctaat aaggcatcac atagacgtcg ggaaagccac      3120
     tccagttaag cagagacact atcccgttag tccagctgtc gaaaaggtcc tgtacgctga      3180
     aatagatcgt atgttagagc ttggggcaat agagccatca acaagtcctt ggagttcacc      3240
     aattcgtatg gtaattaagc cgaataaagt ccgcctttgt ttggatgcta gaaaattaaa      3300
     tgaagcaact aaaaaagacg catatccatt gcagagcata gaaggtattt tctccaggtt      3360
     gcctaaagcc aatattatca gtaaattgga tctaaaggat gcctattggc agattcagtt      3420
     aactgaagaa gcaaagccac ttacggcttt caccgtgcct ggacgcgcat tatatcaatt      3480
     tgttgtaatg cctttcggct tatgcaatgc accatccaca atgtgccgtc tcatggacga      3540
     tttgattcct ccagatctac ggcattgtgt gtttggatac ttagacgatc tatgcgtggt      3600
     cacggaggat ttccaaaccc atttgtctgt actcatacga atcgcagatc agtttcgaaa      3660
     ggccaatcta acgttaaacm taagcaaaag ccatttctgt gttactaaag tcaattatct      3720
     gggttatata attggagaag gaggtattac cacggatccg gccaagatat catgtatttt      3780
     aaactggcca tcacctcgaa atataaaaca agttagagga tttttaggag tttgtggctg      3840
     gtaccgccgt ttwatttcga attttgctga gttgacgttt cccataactg aacktttaac      3900
     aaaaagcaag ccctttaagt ggtcaccgga agcgcagaaa gccatggatg cactaaaagc      3960
     caaacttacc tctgccmcgg tattacataa tcctgacttc acgaagaaat tctttctcca      4020
     ttgcgatgca agtgattttg gtattggttc agttttagta caattatcag aatcgggaga      4080
     ggaaagacca attgccttta tgtccaagaa gctttctaaa gcacagagaa attatagtgt      4140
     cacsgaacgt gaattgttgt ccgtaatact gtccattgaa aaatttcgtt gctatcttga      4200
     gttacaagaa ttcgaggtaa tcactgatca ttcaagcttg atttggctca tgagacagca      4260
     aaatgttaca ggtcgactat cacgatggat atttaggtta cagggattta aattctccac      4320
     aactcatcgt aaaggaaagg ataatatcgt tccggatgca ttgtctcgga tgtgcgataa      4380
     tcaaatcgag agcatagaaa tcgttggtcc agaaatcgat ctcgaatcgc cttcttttaa      4440
     tgatgctgaa tatgtagagc ttagaatgwg ggtggaagca aatgttgata aatttccaga      4500
     cttacgagtg catggaaaat ttgtttacat takgacagag catccctcag gaaataccga      4560
     gcaggaagcc aatagctgga aactctgggt tcccgaaaaa cttcgagcag ttgcaatttg      4620
     gcaggcacat gatagtgttg tttctgcgca tggaggtatt caaaaaacga tcgagcggct      4680
     acgacgaaat cttttctggc cagggttgtc caaagaagtt cgaaactata tcaatgcgtg      4740
     tgaaatgtgt aagcaaacca aagctcccaa ccaaattttg agaccgccta tgggtgagca      4800
     aagtgtttck ctaagaccat tccaacgtct gtacattgac cttcttggcc cgtatccacg      4860
     cagtaagaga ggatataccg gattattgat tgttttggac cattttagcc gatatcactg      4920
     gctctgccca ttgaagaagg gtacsaccgc agtaattaac aagtttctat gtgagcgaat      4980
     tttttgtgaa tttggggtac cggaaactat aatcagtgac aacgggtcac aatttaaagc      5040
     taaggaattt gaagcaatgc tgacaaaatg gggtattcgg catatttaca cagcacttta      5100
     ttctccacag agtaatgcgg cagaacgagt taatcgctcc ctaatagcag caatacgttc      5160
     atacctccgt caagatcaga ccgactggga tctacattta acaagcattt cttcagcgct      5220
     tcgctcagca ttacatcagt ccataggttg ctctccgtat aaagcactat tcggatttaa      5280
     catggttaat catggatcgg attatagctt gttaaagaaa ttatcactac tagaagaatc      5340
     cactcggcta gaaagagtcg accaattagc tttattacgc gaggaaatta agagaaatag      5400
     tcgtaaagcc tacgaaacca atgttaagca atacaatctc cgatcgagac cagttacata      5460
     ccgagaaggc caagaagttt tcaaacgcaa ctataacctt agtaacttta gtcaaaatta      5520
     tagcaaaaag ttwgctcatt cattttctaa gtgcagaata aagaaaaaat tgggtaatgc      5580
     attttactta ttagagacst tggcaggaaa agaaatcgga acttatcacg ccaaagatat      5640
     acgatcataa ttccagctaa tcatgtctcc gattactcga cagattatct gtggt           5695
//
ID   Gypsy-55_DEl-LTR repbase;    DNA;    INV; 2231 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.06, Created)
DT   23-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_DEl-I;
KW   Gypsy-55_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2231
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3094-3094 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus. 4-bp TSDs.
XX
SQ   Sequence 2231 BP; 700 A; 473 C; 404 G; 653 T; 1 other;
     tgtaatggtt gccttgacca aattaaatgt ctagcttaaa aatatttgtt ttgtttacgc        60
     gccttacgat attcacaact actctgcagc cctgttcgat aatatcgagt attttgagta       120
     tatcgagtat cgaaaagaaa aaatgagatc agctgttggt gcagtatcga attgcatcca       180
     cgtttcccag aaaaaacttc ggccacaacc ttttcttttc cgtttgcaac gtgaagataa       240
     ccagacgtac caattggcca gatcctcaat taagcccaca tgattagtta aatctataaa       300
     aatcaagtgc atcctatacc tccgcattcc agttaattaa ttaacatttg caatcatttc       360
     aattggaatc gacatggtaa atattaacgg cagacgccgc ataaaaagaa cactaaggaa       420
     ccaccagctt taattccgtt ccgtctaggt tgcactggct gccaactaat cgtgccttct       480
     caaacggcca ggttacgttg aaataccaaa ccaagtcttg gggaacgggc cccaaaaatt       540
     gcatcagttc gccctaacct caaaccggca taagcgttcc gcttcccatc agccagagtg       600
     agaccatcaa atccggtcct ctgccacttc tgtgccgatc agccgcgcgc cacagcattt       660
     ctatcaccac acacagactc ccccggtgtc tttctctaca ctaggatcgt gcaagcaaag       720
     aaacagaatc actagtagcc ccggcgaggg acgaaacatt tacgggcgga tttgaaaaaa       780
     ctagcgccgc catgtagaga ccgactagtt accagcccca acccagctaa tgcgttcggg       840
     ttatacactt cacctttaga tacctaagca atatgtgcat ataagcctac gcgatcgttt       900
     atggccagac ccgactgtgc cttagtcaaa acgacaacca atacattctt cagctttgtg       960
     aattcactcg cagattagtt acggaaacac acaacactgt ctggaagtgc gcaagtgatg      1020
     ccataaatct ttcagtgcaa atcgaagcaa aacaaaggaa ataatgcgta ttcaaatttc      1080
     aggaactact tatttgcatt aagttaaata aaacttcctc cccatacact aaagcacggg      1140
     actaatcaac tcgtcatcca tgtattcttg aaggccttca acgaggattg gacgcgggta      1200
     agtgtaccca aaagaatgta ttctaaatac ggtgaatcaa ttttagctta atccaaatat      1260
     tagttctgga cgtgttatgc ttatacacca tcgatgatgc cgttatcgcg cagtcagtta      1320
     cgttcatagc ggttctttct tttgttttga ttatccatcc gtaattcggc tataaccgtc      1380
     tgcataaatc tgcattgtgt ttgcattatt ttaaaaagga aaatgttttg ttgtaataat      1440
     taatctaata cattttcttt tgcatatata tatatatata caatttctac gccttttcag      1500
     ccagtgtgtg tgtttacgta ctgatccaac attgtgtata aagttcatca acaaaaacaa      1560
     aaaaaagtgt aatattaata aagttaataa tttcataagt aaatagctaa ctagttagag      1620
     acacaaaaaa tgaatttaat tgagaaagaa gagaacaaga aaatcataat gaagcagaac      1680
     attaactgta ccgcaattaa ttgtttggtt tagctccgac ttaataaatc atttgtagta      1740
     acaatgccta aattgaacat tatgagtgag tagttgattt acttgtgcga cctgggaatg      1800
     taaatatttg atcaaccaca atttgggttc tttaataatc cgttcaaggt taaagacatg      1860
     gtagggtggg tagcgaattc gcgtgagtca atcaacagct aagacttcac gcatattatc      1920
     tggtttctga aaagttctac ttttattcaa tgatttgagt caattcgcct agttgttgct      1980
     ttgtttggtt tacccgtgca ggtaaccgct tgagtatttc aaccatgatc gtgtggttat      2040
     ttagtttcag aaagggactc taaaaattat tcttaacgta atgttaggca gaagggtcag      2100
     caaaaacccc ccccaattcc cggaagagct agagatgaca tgggtcccgc tccgctgtac      2160
     actcagctgt ctaatttagt ttctatggac taaaaataaa ctcttatttt cagtgtatwt      2220
     aaaccattac a                                                           2231
//
ID   Gypsy-55_DWil-I repbase;    DNA;    INV; 4505 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_DWil_;
KW   Gypsy-55_DWil-LTR; Gypsy-55_DWil-I.
XX
NM   Gypsy-55_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4505
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1879-1879 (2012).
XX
RN   [3]
RP   1-4505
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(200..4192,4177..4488)
FT                 /product="Gypsy-55_DWil-I_1p"
FT                 /translation="MPCLKNFINAKIASASKASITALHKYVYEREGDRTNR
FT                 QRLREFSGFSFDENDAQYESKKKYVEQNLSERDLVSICNILGIGHEVENLQ
FT                 SHIFHELRNLFCENEERNDESSDESDDQEGDESAALSSVYNDAEENVEQKE
FT                 KENSQRCKRNSGDEKRYSDISMRFGMNFRDIEDTIRTFDGTNSIGIEEWLS
FT                 EFEDQALLMDFNDLQKLVFAKKSLRGNAKLFVFSERGINSWSILKNALLSE
FT                 FRQTVSSKELHKQLSERKRNKSENVQEYFYKMKDIASRGRIEDQALIQYII
FT                 DGIDERETNKSVLYGANDLKNFKSKLRSYETMCEKSKAVDRSVFVKKMASN
FT                 GISKNKEVSCYSCGHKGHIASDCSNKDKGRKCFKCNQFGHIANKCSQVKQK
FT                 DEQKVNAYTLQCQSKITSKTVLIENINCSALFDTGSKFNVMREDLFKELSE
FT                 QKLLSCSVSLIGFGGDRDENQIRPIGHFEKSIKIDNDDYVLDFYVVPMKCM
FT                 DIKIIIGEQICLLAELIFNRYGLTVRKYVENEIEISELNIMKIEAIANNDE
FT                 INIDQAAGEKAKIEVRELIENYKPVKTKSTQIEMNITLNAETPIFSRPRRL
FT                 PFQETKIVDEQIEEWINNDIIEESNSEFTSPVVLVKKRDGSPRLCIDFRRI
FT                 NKVIVKDRFPLPLIEDQLDRLQDAKVFSTIDLKNGFFHVPVAESSKKYTSF
FT                 VTQNGQYQFKKVPFGLSNSPGVFQRHINAIFRPLTRRGIALPYIDDVIIPA
FT                 KDEKEAVLNLKEVITTCKDYGLELNIKKCHFLKRRIQFLGHIIENQMLYPT
FT                 TEKIEAVSKFKIPQTPKQLQSFLGLSGYFRKFIPNYAIIAKPLTDLLKSNN
FT                 KFYLGAAEEYAINLLKKKLTENPVLKIYNQKYETEVHTDASIDGFGAVLLQ
FT                 KSDEDDELHPVYFMSKKTTDAQRKYSSYELEVLAVIEALNKFRVYLLGINF
FT                 RLITDCNAFTKTLDKQSLCTRVARWVLFLQEYNFKVEHRPGTRMKHVDALS
FT                 RYPILTITEDSMSIGLKQAQMQDEQLKAIKQVLTDKKQSYDNYFLKSDILY
FT                 KLVNDVELIVVPNSMQKQIISRAHDRGHFAIKKTKELICKDYYIPNIEDKI
FT                 EKYISCCIPCIMSNRKRGKQEGLLHPLQKEDVPLHTYHVDFLGPLDSTHKN
FT                 YKHILAVIDSFTKFCWLYPTKSTTANEVIAKLSAQSSIFGNPSTIISDRGA
FT                 AFTADIFIQYGRDENIKLVKTTTGLPRVNGQVERLNATIISVLSKLSIDDP
FT                 TKWYKHVSRVQQAINSTYARSINSTPFELLIGVKMRTKDDDQLIKLINDET
FT                 IATFNNDRNELRCKPRRRSTKTQILKMQNENKKSYNLRRKPAKHYDVGDLV
FT                 AIKRTQFGAGLKLKPKFLGPYQVVKVKQNNXYDVLKMGSSDGPKNTSTCAE
FT                 YMKPWSTDYDDDDDGAFGPNA"
XX
SQ   Sequence 4505 BP; 1666 A; 756 C; 903 G; 1176 T; 4 other;
     aaattgggcg ctcgtccgcg atcggttaaa agagaatggt aaaaagtgaa ttgtgaaaag        60
     aaaactgtga aaagaaaacg gtgaaaagat tgctgaaaaa aaagtataaa gaagttaaak       120
     gaaaaagcga ctaatagaat ataaaacaat aaatgctgta aaaaataacc maattttttt       180
     ttcccccatc ataamcaaaa tgccgtgttt aaaaaatttt attaatgcta aaattgctag       240
     tgccagtaaa gcaagcatta ctgctttgca taaatatgta tatgagcgag agggagacag       300
     aaccaatcgg caacggttaa gagaattttc tggattcagc ttcgatgaga atgacgcgca       360
     atacgaaagc aagaaaaaat acgttgaaca gaacttgtcc gaacgtgatc tcgtgtctat       420
     atgtaacata ctcggtatag ggcacgaagt agagaatttg cagtcacata tattccacga       480
     acttcgcaat ttgttttgtg aaaacgaaga gcgtaacgac gaaagcagcg acgaatctga       540
     cgaccaagag ggtgacgaaa gtgccgctct cagtagtgtg tacaatgatg ctgaagaaaa       600
     cgttgaacag aaagagaaag agaattcaca aagatgtaag agaaacagtg gagacgaaaa       660
     acgttatagt gacatttcta tgcgttttgg tatgaatttt cgtgacatag aggacacaat       720
     tagaacattc gatggaacaa attcaattgg aattgaggaa tggctttcag aattcgaaga       780
     tcaggctctt ttgatggact ttaatgacct tcaaaaatta gtttttgcaa aaaagtcgct       840
     aagaggcaat gccaagctat ttgttttcag tgaaagaggt attaattctt ggtcaatact       900
     caaaaatgca ttattaagcg agtttaggca gaccgtatcg agcaaagaat tacataaaca       960
     actgagcgaa agaaagcgaa acaaaagtga aaatgtgcaa gaatattttt ataaaatgaa      1020
     agacattgca tcgcgcggta gaatcgaaga tcaagctcta attcaatata taatcgacgg      1080
     aatagatgaa cgtgaaacta ataaatcggt tttatacggt gcaaatgact taaagaattt      1140
     taaatcaaaa ctaagaagct atgaaacaat gtgtgaaaaa tccaaagctg tcgaccgcag      1200
     tgtttttgtt aaaaagatgg caagtaacgg aatatcaaaa aataaagaag tcagctgtta      1260
     tagttgtgga cataaaggcc atatagcaag tgattgcagc aataaagaca aaggtcgaaa      1320
     atgttttaag tgtaaccaat ttgggcatat tgccaataaa tgcagtcaag ttaaacaaaa      1380
     agatgaacaa aaagtgaatg cgtatactct acaatgtcaa agtaaaatta cgagtaaaac      1440
     agtgttaata gagaatataa attgttcggc tttatttgat acaggcagca aattcaatgt      1500
     tatgcgcgaa gacttattca aagaactaag tgagcaaaaa cttttgtcgt gcagtgtaag      1560
     tcttattgga tttggcggtg atcgtgatga gaatcaaatt agaccaattg gacatttcga      1620
     aaaatcaatt aaaatcgata atgatgacta tgttcttgac ttttatgttg ttccgatgaa      1680
     gtgtatggat attaaaataa tcattggtga acagatttgc cttcttgccg aattaatttt      1740
     taatcgttat ggtctaacag tgcgtaaata tgtcgagaat gagatcgaga tttcggaatt      1800
     gaatataatg aaaattgaag ctatcgcgaa taatgacgaa ataaatatag atcaagctgc      1860
     gggtgaaaaa gcaaaaattg aagtgcgaga attaattgaa aactataagc cggttaaaac      1920
     aaagtcaacc caaatcgaga tgaacataac attaaatgcc gaaaccccaa tattttcgcg      1980
     tccgcgcaga ctaccgtttc aagaaacaaa aatagtcgac gaacaaattg aagagtggat      2040
     aaacaacgat ataattgaag aatctaattc agagtttaca agtcctgtag tccttgtcaa      2100
     aaagcgtgac ggctcaccga gactttgtat tgattttaga cgcatcaata aggtaattgt      2160
     aaaagatcgt tttcccctgc ctcttattga agaccaactt gatagactcc aagatgcaaa      2220
     ggtattcagt acaatagatc tgaaaaacgg attttttcac gtaccagtgg ccgaatcaag      2280
     taagaagtac acatcgtttg tgactcagaa tggccaatat caatttaaga aagtaccttt      2340
     tgggctctcc aattcgcctg gtgtgtttca acggcacatt aacgcaatat ttcgacccct      2400
     tactcgccga ggtattgcac ttccctacat agacgacgta ataattccag caaaagatga      2460
     aaaagaagct gttttaaatt taaaagaagt cattactacc tgcaaagatt atggactgga      2520
     actcaacatt aagaagtgtc attttttgaa aagacgaatc caattcttag gacatattat      2580
     tgaaaatcag atgttgtatc cgacaaccga aaagattgaa gccgtttcta aattcaaaat      2640
     tcctcagaca cctaagcaat tgcaaagttt tttgggttta agtgggtatt tcagaaaatt      2700
     tatacccaac tacgcaatca ttgcaaagcc attaacagac ttgttgaaat ccaataataa      2760
     attctatcta ggtgcagcag aagagtatgc tatcaattta ttaaagaaga agttgaccga      2820
     aaatccagtt ttaaagatat ataaccagaa gtacgaaacc gaagttcata cagatgcttc      2880
     aatagatgga tttggtgcag tcctattgca aaaatcagat gaagacgacg aattacaccc      2940
     tgtttatttt atgagtaaga agactacaga tgctcagcgc aagtattcga gttatgagct      3000
     ggaagttcta gcagtcattg aggccttgaa caagtttaga gtttaccttt taggaatcaa      3060
     ttttcgtttg ataactgact gcaatgcttt tacgaagaca cttgataagc aaagtttgtg      3120
     cacaagagtt gcacgttggg tcttatttct acaagagtat aatttcaaag ttgaacatcg      3180
     tcctggaaca cgtatgaagc atgtagacgc cctgagtaga tatccaatat taacaataac      3240
     tgaagatagt atgagtatcg gactgaagca agctcaaatg caagacgaac aacttaaagc      3300
     tattaagcaa gtacttaccg ataaaaagca gtcctatgac aactattttt taaagtcaga      3360
     tattttgtac aagcttgtaa atgacgtcga attaattgta gtaccaaaca gtatgcagaa      3420
     acaaataatt agccgagcac atgacagagg tcacttcgca atcaaaaaga ctaaggagtt      3480
     gatttgcaag gattattata taccaaacat cgaggataaa atcgagaaat acataagctg      3540
     ctgtataccg tgtatcatga gtaatcgcaa aagaggtaag caggagggtc tgctacatcc      3600
     actgcaaaaa gaagacgtcc cgttgcacac atatcatgta gattttttgg gtccccttga      3660
     ctcgacgcat aagaattata agcatatcct agccgtaatt gactcattca ctaaattctg      3720
     ttggctttat ccgacgaagt caacaactgc aaacgaagtt atagcaaagc tgtctgcaca      3780
     gagttcaatt ttcggtaatc cttcaacaat tatttcggat agaggtgctg ctttcaccgc      3840
     agatatcttc attcagtatg gccgagatga aaacattaaa ttggtgaaga cgacaactgg      3900
     tctaccccga gtaaacggtc aagttgagag gttgaatgca actataattt cagtactatc      3960
     taagctcagc atcgacgatc caacgaaatg gtacaaacac gtatccagag tccaacaagc      4020
     aattaattcc acatatgcta gaagtattaa ttccacacct ttcgagctgc taataggagt      4080
     aaagatgcga accaaagacg acgatcagct aataaaacta atcaatgatg aaaccatagc      4140
     tacatttaac aacgaccgca acgaactacg atgtaaacca agacgcagat cctgaagatg      4200
     caaaacgaga ataagaagtc atacaatttg agacgtaaac cagccaaaca ttacgacgtt      4260
     ggtgatctag tcgccataaa gcgaacacaa tttggcgccg gcctaaaatt gaagccaaag      4320
     tttttgggcc cataccaagt tgttaaagta aagcaaaaca atkcatatga tgtactaaag      4380
     atgggaagtt cagatggtcc aaagaatacg tcaacgtgtg ctgaatatat gaagccatgg      4440
     tcaacagact atgatgatga tgacgacggc gcattcgggc cgaatgctta gtcaggacgg      4500
     ccgga                                                                  4505
//
ID   Gypsy-55_DWil-LTR repbase;    DNA;    INV; 403 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_DWil_;
KW   Gypsy-55_DWil-LTR; Gypsy-55_DWil-I.
XX
NM   Gypsy-55_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-403
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1880-1880 (2012).
XX
RN   [3]
RP   1-403
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 403 BP; 157 A; 74 C; 84 G; 88 T; 0 other;
     tgtggggttg ggctggtaac gccgaatggc cagaccacct caaatcagct gtttaacgac        60
     ggtgtggcaa gcgatccata tgagacgagg tggcaagcga cccacgaaaa cgacgatgtg       120
     gcaatgctgc tacgagaaga cgaagaagaa ctttttaaga cgagccaacg acgagaagac       180
     gttttttgaa aagatgtata aaagacgaga agacgggtat taaaaagaag tgttaaagac       240
     gaagacgtgt aaaaacctaa agacgaaaca attaccattc aattcaaaca tttttataat       300
     tactaaaacc taattataat ttaaaataaa acctattacc atataactaa atataaatca       360
     aacgggacta cttatttcaa cggaatcgga acctagtccc aca                         403
//
ID   Gypsy-55_LMi-I repbase;    DNA;    INV; 7034 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7034
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1175..1732,1785..2723,2669..4051,4015..4755,
FT                 4662..4847,4808..5725,5680..5946)
FT                 /product="Gypsy-55_LMi-I_1p"
FT                 /translation="MDACRKIIPSALPEEERIRIARTRLSGDASSWVVHAT
FT                 DNCRTLEEFLAKFEEKYWSAEKQDEVLQEFMHAPPYRPGKDTNMKTYCENL
FT                 CRKIEHVKGQMSERSTMTVLREKLPWSVRGYLMGEKDKASFLRKVGDMDVW
FT                 YRSNDNRYHGNNNSNQNRNNYGNPNYDNQANEFEVRCAQVDRGRGRGRSIP
FT                 KKRGAATVEGQTAAGNEARPHQQRNGCRENNDKVPGNRLDETNDCERVHAK
FT                 ENRSEHLREMNVLRTHTESDVVASEVGIVIEAAKDYARQDKGPAQIPMQLP
FT                 VTKVPNAMSSVFDLEVDNRDWLIQAGKMYEGIEAWKREGRKVNFAVKEDEV
FT                 KHCNTEKSCLKGAGTLREVSRNMNKVNECIMGDNDEVIEYRKEKGAREVST
FT                 NEACIDAILDCDESDHVGRAAGGDASGVLARFDDRTTLTSETDDYNVYEVK
FT                 ADVIRPDESESEDELAELSEVRDIKCVLCQSEEKDRGGKSRLQSSNRTVYC
FT                 GIIRRQKQVAKFEQDGLLWDNLDVEQDLLWEDKGDETKRYDQIMVPVKVHG
FT                 TNVQVLVDTGSQISAMSQSYYEQLKKLTEIVEMPVRGVKVIGATGACSKPI
FT                 KSQVLLQFSIKSCVFEQEFLVVPQLSTDMIVGIDWMVKYKVVIDCGRKVVS
FT                 FSVENSKMEIGFDEMDRVIKNEDLRLRLVTLPLYGGLSDGSERYHIRNLNA
FT                 LQPTDDDFKTIVENVSDISSEQKAELYQILVNNRKVFSDKPGKVRGFEYKI
FT                 ETVPHEPFFGPVYQVPLARKEAVQNEINRMEEWGIIERSKSPYNNPMVLVF
FT                 KKDGSVRIVIDARELNKVVKRETDRPECIDDVLQKFHNVKYMTSLDLTAGY
FT                 WQIAMEEESRKLTAFLFAGKCYQYKVIPFGLNTSVSVFIRALDGVLGKELG
FT                 SRITIYVDDMLIATSSWEEHCELLNKVLDALIRGGMTLKIKKCEFVKKEVE
FT                 FLGILICKERSRVSGHIITTSGITKDPRKLEAIRDSPPPRTKKQLKSFLGL
FT                 CNFYRKYAKGQVFNDPDLCNLLKKNSAFIWTEKCQVAFERLKAELLENQIL
FT                 HHPDLAIPFHMGTDSSDYGVAVHVFQEVGEGENKEIRSIAFASRILTKYER
FT                 NYSVSEKEAVAIVWGFKKFKGFLWGHKVIVHTDHKALTFLKTCRLLHDRLR
FT                 RWALFMQQFDYEICHIKGVDNSWPTHCRECRTTRTVSLMKNNQKAYLKGRR
FT                 QFVADALSRMPYDPDGVVNEEQSEGLFKMMYLKEVEGRKKIENICKNMRDI
FT                 KMMTKFGNEHARHQNDDEIWKLIKVEFDAKNERGEKLRRYYKIYDGILYRR
FT                 KNLDTEEWRVCWPNKYVTELTDYFHLAYGHCGAKKCADKITESVVFDNVMR
FT                 RVTERVRTCDRCQKVKVANMTNRGPMQSIQPKDSLEILATDLYGPLPKTTG
FT                 NFAYILVVLDTFSKFVKLYTLRKATARAVYSKLMDYFQKIGKPKSILSDNG
FT                 PQFISKIWTEGMKGEGVEVIHISVYHPSSNPAERYMRELGRYFRTYCHNNH
FT                 KAWGKYVSDIELIMNSLSHESTGFTPYEIMLGMRPKSVVEELINFPPRQEL
FT                 DLTRKRRCFSTAARIRSHAEKEMLREQMNKRAQARIKRHDENLKPVKFKIH
FT                 DKVLVKMHEKSSEIDNEIAKFKFIYNGPFEIQSIPHPNAYYLVYPQ"
XX
SQ   Sequence 7034 BP; 2374 A; 1095 C; 1760 G; 1802 T; 3 other;
     cgtggcgacc gtagtggaca ggacagtact tatcttgtcc tgagccgcgt aatcttagga        60
     tttaaataaa ttgtgaaatt tctaaaaaat gccggaacaa acagtagacc aaacaacaat       120
     gtcgaattcg acaatgcagg cggggcggcc acagcaaagg ctggagccgg cttccgcatt       180
     gtttggcggt gagccagacg ccgaccgtga cacagatttt aaggtttgac gtgaaaacag       240
     agaatgtagg cgatgtgaca ataagcagga aacccagaat gtgagcggat ccgggtgaaa       300
     catacacaga gagtttaagt atagtgtggg tctgaaaatg aaaccagagc cgatgtcaaa       360
     tctgccattt gatccgaata tgtggatgca aaggattagt gaagttatca gtcagtcaca       420
     tcaatcgtta gctaaagact aactagaaaa ttgattagat gcaatggagc tgtcaaataa       480
     atctttagct agcaaaactg atgtttagat aacaaaatag actcatcagt tcagtctctg       540
     agtcaacctt ttgatagtaa aataaattct ctggacacca aaattagtga acaaatgaaa       600
     accctgactg aacagatgga cagtaaaatt acgagtttag ataaaaagtt taatagcgaa       660
     ttagaatgtg aaagaaatta atgactaatg aaattaaaaa gcagagagag tatctttatg       720
     acagtgtgag tagtcagtta actgagaagt ttaggtccat ggaagggata ataaatgaaa       780
     gtatagaaga aaaggcagaa aagattcgcg aagaggtcga aactaaagtt gatcgtgaag       840
     tgaggcttgt cagtaacaaa caagaggaaa tacgtactga actgaatcat tctgtaaata       900
     cattaaaggg acaaagtcgt gaaggttcgg gacgagacag aaacgaagtt aacaagaaac       960
     ggtaattaaa gtcmatactg atgtgcgaag tmaggctcag actttggaat ctaacgttaa      1020
     tcaaaagctg gtggaaatta aagaacaagt aaagagtcta gaaaccgtaa agagtttggc      1080
     taccacgttc acattaggtg gcgtgtatcc caaccatgtg agcctggaaa tcgaaaaatt      1140
     cgacccgaaa ggtaacgtgc acccagtgat tttcatggat gcgtgcagga agattatacc      1200
     ttctgcgtta cctgaggaag agcgtatcag aatmgcgaga acccgattga gcggtgacgc      1260
     tagtagctgg gtggttcatg cgacagataa ctgtaggact ttagaggaat ttctggcaaa      1320
     atttgaagag aagtactggt ccgcagaaaa acaggacgaa gtacttcaag aatttatgca      1380
     tgctcctccg taccgaccgg gtaaagatac aaacatgaaa acgtactgcg agaatctgtg      1440
     caggaaaatt gagcatgtaa aaggtcaaat gtccgagcga agcacgatga ccgtgctgcg      1500
     cgaaaagtta ccgtggagtg ttcgcggtta cttaatgggc gagaaagaca aagcttcttt      1560
     cttaaggaaa gtgggcgaca tggatgtgtg gtatcgaagt aatgacaacc ggtaccacgg      1620
     taacaataac tccaatcaaa acagaaataa ttacggtaac ccgaattatg acaaccaagc      1680
     gaacgagttt gaagtacggt gtgcacaagt ggatagagga agaggaaggg gctagaggta      1740
     gaggcgccca tcgcgggaga ggtgtcacca ccatatccgt gtgacgatca attcccaaaa      1800
     aacgaggagc cgcaacagta gaggggcaaa ctgctgcggg taacgaggcg cggccccatc      1860
     aacaaaggaa cggttgccgc gaaaataatg acaaagtgcc cggcaaccgc ctagatgaaa      1920
     caaacgactg cgagcgagtt cacgcgaaag aaaataggag cgaacatctg cgcgaaatga      1980
     atgtacttcg tacgcatacg gaatcagatg tagtagctag cgaagtcggg attgttatcg      2040
     aagcggcaaa ggattatgcg cggcaagata aagggccggc gcagattccg atgcagcttc      2100
     cggtcacgaa agtgccaaat gccatgtcta gcgtgttcga tctggaagtc gataaccggg      2160
     attggctgat acaagcgggt aagatgtatg aaggtataga agcatggaaa agggaaggta      2220
     ggaaagtaaa ttttgcagtg aaggaagatg aagttaagca ttgcaatact gaaaaaagtt      2280
     gtttgaaagg agcgggcacg ctgagagagg tgtcacgcaa catgaataaa gttaatgaat      2340
     gtataatggg agataatgat gaggttattg agtataggaa agaaaaaggg gcacgggaag      2400
     tgtcgacaaa cgaagcttgt attgatgcca ttctcgattg cgacgaaagc gaccacgttg      2460
     gacgggcagc cggaggtgat gcgtcgggag tccttgctcg ttttgatgac cgaacgacat      2520
     taacgagcga aacagatgat tacaatgtgt acgaggtcaa agcagacgtg atacgaccgg      2580
     acgaaagtga aagtgaagat gaactcgctg aattatcaga ggtgcgtgac ataaaatgtg      2640
     tgttatgtca gtcagaggaa aaagatagag gaggcaaaag caggttgcaa agttcgaaca      2700
     ggacggttta ttgtgggata atttagacgt ggaacaggat ttgttgtggg aagacaaagg      2760
     tgatgaaact aaaaggtacg atcaaatcat ggttccggtt aaagttcatg gaacgaacgt      2820
     acaagtttta gtcgatactg gaagccaaat tagtgcaatg tctcagtcat attatgagca      2880
     attaaagaaa ttaacagaaa tagtagagat gcctgtaaga ggcgtaaaag tgataggtgc      2940
     taccggagca tgcagcaaac caattaaatc acaagtgctg ttacagtttt ctattaaaag      3000
     ttgtgtattt gaacaggagt ttttggtagt acctcaattg agtactgata tgatagtagg      3060
     aattgattgg atggtgaaat ataaagtggt aattgattgt ggcagaaagg ttgtatcgtt      3120
     ttctgtggaa aacagtaaaa tggaaatagg ttttgatgag atggacaggg taataaagaa      3180
     tgaagatttg cggttgcgtt tagttacgtt gccgttgtat ggaggattaa gtgacggttc      3240
     agaacgttat cacatcagaa atttaaacgc actgcaaccg actgacgatg attttaaaac      3300
     catagtagaa aatgtttcgg atatttcaag tgaacagaaa gcagaattat accagatttt      3360
     ggtcaacaat aggaaggtgt tttcagacaa acctggtaaa gtacggggat ttgaatataa      3420
     aattgaaact gtaccgcatg agccgttttt cggaccagta tatcaggtgc cgttagctcg      3480
     gaaggaagca gtacaaaacg aaataaacag aatggaagaa tggggaatta tcgaaagatc      3540
     taaaagtccg tacaacaacc caatggtttt ggtttttaag aaagatggca gtgttagaat      3600
     agtaatagac gcgagagaat tgaacaaggt agtcaaacgt gaaactgatc gtccggaatg      3660
     tatagacgat gtgttgcaaa agtttcacaa cgtgaagtat atgactagcc ttgatctaac      3720
     ggcaggatat tggcaaattg ccatggaaga agagtcgagg aaactgacag ccttcctatt      3780
     tgcaggaaag tgttatcagt ataaagtcat tccgttcgga ttgaacacgt cagtatcggt      3840
     gttcatccgt gcattagacg gtgtattagg taaagaactt ggttctagga ttacaatcta      3900
     tgtcgatgac atgttaattg caacttcctc gtgggaggag cactgcgaat tgttgaataa      3960
     agtattagac gcgctgatac gcggcgggat gactttgaaa ataaagaagt gtgaatttgt      4020
     aaagaaagaa gtagagtttc tgggcatatt ataacaactt ctggaataac taaggatccg      4080
     cgaaaattgg aagccattag ggacagccca ccaccgagaa cgaagaaaca attgaagtcg      4140
     tttctcggtc tctgtaattt ctatcgaaaa tatgcgaagg ggcaagtttt taatgatccg      4200
     gacttgtgta atttgttgaa gaaaaacagt gcatttattt ggacggaaaa gtgccaggta      4260
     gcttttgaaa gattaaaggc agaattacta gaaaatcaaa ttttgcacca tccagatttg      4320
     gcaatacctt ttcatatggg aactgattca tctgattatg gggttgcagt acatgttttc      4380
     caagaagtag gagaaggcga aaataaagag attcgctcga tagctttcgc gagtaggatt      4440
     ttgacaaaat atgaaagaaa ttatagcgtg tctgaaaagg aagccgtagc tattgtctgg      4500
     ggctttaaaa aattcaaagg tttcttgtgg gggcacaagg ttattgtgca cactgaccac      4560
     aaggcgttga cgtttttgaa aacctgtcga ttgttgcacg accgattaag gagatgggcg      4620
     ctattcatgc aacaatttga ttatgaaatc tgccatatta agggcgtaga caattcgtgg      4680
     ccgacgcact gtcgagaatg ccgtacgacc cggacggtgt cgttaatgaa gaacaatcag      4740
     aaggcttatt taaaatgatg tatttgaagg aggttgaagg cagaaagaaa attgagaaca      4800
     tttgtaagaa catgcgcgac atcaaaatga tgacgaaatt tggaaattaa ttaaagtcga      4860
     attcgacgcg aaaaatgaga gaggcgaaaa actgcgcagg tattacaaga tttacgacgg      4920
     catactgtac cgacgtaaga acttagatac ggaagagtgg cgcgtctgtt ggccaaataa      4980
     atacgtgacg gagctcactg actattttca tttagcttac ggtcactgcg gagcgaaaaa      5040
     gtgcgcagac aagataactg agtctgtggt tttcgacaat gtgatgagga gggtaacaga      5100
     acgcgtgagg acttgtgaca gatgccaaaa agtaaaagta gctaatatga caaaccgagg      5160
     accgatgcag agtattcagc ccaaggatag cctggagata ttagctacag atttatatgg      5220
     tcctcttccg aaaacaactg gaaatttcgc gtacattttg gttgtattag atacgttttc      5280
     taaatttgtt aagctgtaca cattacgtaa agctactgct agagcagttt acagtaagct      5340
     gatggactat tttcaaaaaa taggaaagcc aaaatcaata ttatccgaca acgggcccca      5400
     attcatttct aagatttgga cggaaggtat gaaaggtgaa ggggtggaag tcatccacat      5460
     atcagtctat cacccttcaa gtaaccctgc agaacgctat atgcgtgagc tgggcagata      5520
     tttcagaaca tactgccaca acaatcataa agcgtggggc aaatatgtgt ctgacattga      5580
     gctaattatg aactcgctgt cccacgagag tactgggttc actccttatg agattatgct      5640
     gggaatgaga ccgaaaagtg tagtggagga acttattaat tttccaccgc ggcaagaatt      5700
     agatctcacg cggaaaagga gatgttgaga gagcaaatga ataagcgtgc tcaagcacgg      5760
     atcaaaaggc acgacgagaa tttgaaacca gtaaaattca aaattcatga caaggttctc      5820
     gtgaaaatgc acgagaaatc tagtgaaata gataatgaga ttgcaaaatt taaatttatt      5880
     tataatggac cgtttgaaat tcaaagtatt cctcacccta atgcttatta tctggtgtat      5940
     ccgcaatagg taaaaaattc ggtgtgcgga acatcactga tttacaacca taccagagta      6000
     gggataatta accagttaat aaagaaatgt aatttgtgaa ggatcattag cgaaatgatg      6060
     tagcctgatt aaagactgag ctttccctag gtgcactgaa ataagtatgg gctgcttaaa      6120
     atgattgcag caaactgtta gtgacccgtc attaaagtaa ttagcaaatt tagtcttaat      6180
     tgagtatgta tctaaatgtt ttgaaataat tgttttattc tctgatttca ctgtatgaag      6240
     tgtttgtgac ttcagatgta cttagactgg ttatttaagt tgcaggtgac tgataaaaat      6300
     tacaaaattt taatcaaagt tgttcatcaa tgtaatgaac caagctaggc tgaatttgaa      6360
     gttgtgtgcc tttggacatg gtgcacatgc aggcacagaa ataaaatgga agtggggcac      6420
     aacacagtgc tgatgccaat tatttcagtg gtaatgagaa cgtgcgagaa atttagtact      6480
     gagatgcaaa tcagtgcctg aaagaaaaat gattagtgtt attatttgag gacgcagata      6540
     attttatgct gtgtgaataa gattttaatt gggtgttaat tgaatattgt gtagaacata      6600
     gtgatttatc ctatgtgagt tggttaatga agtatttcag ttaattaata attagtgaga      6660
     aaggacacag ataattttct gtgtgagaaa ggtttttgat cttgtattga ttagttattg      6720
     tgtgaggaca tagcgatttc atcctatgtg agtaatttga ctaagagctg catttaatga      6780
     gtagatgata ataatggaca cagttgaata tgatcctgtg tgataatctc ttgatgtaat      6840
     gttgactaaa ttgatttgtt ttgtgttttt cttgcatgtc gttgatcact tttgtttgag      6900
     tctggacgtt tccttggatc tatatggcaa tatagaccaa tgaaacgtgg ggcatatgtg      6960
     acacaacaac acagtgacca acgccgtttt ccattcatgt gtgcgtacag tatgtaatgt      7020
     aaaacgatga ttca                                                        7034
//
ID   Gypsy-55_LMi-LTR repbase;    DNA;    INV; 1755 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1755
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 1755 BP; 513 A; 298 C; 333 G; 605 T; 6 other;
     tgtatttttc ctcattattt gtattttttt gtaatttatt atgtatttgt atattttgtt        60
     tctgtaacat atttgcattg tcctgctaat ttccgtatat gtcaaaaata tactgtaaat       120
     gtagtagaca cgctgggtta gcaagggctt tgctattgta tagaatcatc tttgagtagg       180
     gagttttatc gctggtagcg cagaggcgca cagcgagaga gaggagtcgt ggttstgacg       240
     tagtagcgga cagacgkaat cgtgagacgg tgcgcgcaat ggtgtacggc aaaagtacgt       300
     gaaggagaat gcgtgttgga ttggcactag tggaggagac ggcgaacagg caatattatt       360
     tattcatacg ggcacagctc aaataattaa taaatgcatc aagaggaatg ctgtgggccc       420
     aaaattgtaa ttaacattcg tcgccaagaa gagcctgtgt ttgccaattg ttaagtgcca       480
     acagtctcca atcagcagca ccacgtcgca caccaaaatc agtaagatct gtccagtttg       540
     tcttagcatg tacagctaac cagcgtatta gtgataattg ttcaatagtg aacactgtta       600
     tttgtgaacc tgtgtttaaa aaaatcatta cccatagtca ttgtccagac aggttccttc       660
     ctcatccatt gttttaccga gaatattcac aaagttatag aaaactaaaa atcaaagtca       720
     ttaaagacag tgtgacagtg attaatwata atttgttcag aaaagtatta ctaaatgtag       780
     cttatgccag tgttgctgat caataggttg ctaagtggaa tgaaactgct agactaactt       840
     tcaatttcaa gagatatttc aataaatgtg caaaagattg ttttccattg catattattt       900
     tgaggtaaag tttttacttg caagtactga ttagtgaaaa tagtgattat ttgcaagtgt       960
     ttgaaatgct aataattcct ggttaaagag agagcaaaag ttaatcagam ggttaaatag      1020
     ttcwtttcta aatattcagt gttatcacgt caagtcatta attaattttt gagcttgcca      1080
     ttagtacagt taatagttca gttacaactt gattattgct aaagcacatg gcatactcgc      1140
     tgttgaataa tttctggtac ttatataaac aattaattat ttgaagctgt aaatagtaag      1200
     tattaaggtg agagttttgc atgatctgct gcatgttgca tttgcgtggc tattgcttac      1260
     atttcactgt cttatattca acccctgtgt taatgaacta tttctcagta attagtatat      1320
     tgtcagtgtc ttttgtaccg gatttgacgc gcatactctg atttcctgcc cacccaaatt      1380
     ttacgtaatt tttcacgttg ttaattaact ttgctattat tgagatccca ccaaattatt      1440
     tgctcgtaca acgagctggc gaccgtaaat caataagtta ttcacttttt ccaaattaat      1500
     ccctgtgttc cgtttgttcc gcattttttt catttaaaca ttaatcattt tattccaaat      1560
     tttactttcc actttcttta ttmctatcga tcgttgttgt ctaccaaaga ggtacagcaa      1620
     cgttccggtt atagcctccg ctacatcatc ggcttcatta cccatagctt ttccacccaa      1680
     ttaagataat taggcacacg ggcatttttc taattatcgt atactaaccg gtggtgtagg      1740
     acgggtaggg ttata                                                       1755
//
ID   Gypsy-55_MSe-I repbase;    DNA;    INV; 4633 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4633
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 932-932 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. There are only 2 full-length
CC   copies of Gypsy-55_MSe in the genome.
XX
SQ   Sequence 4633 BP; 1164 A; 1176 C; 1283 G; 998 T; 12 other;
     tggcgcccaa ctagaggcaa gtactacgga ctgagatcgc gagtgctagt gagtacctac        60
     ctagtaaacg cgactcgtca gtgtaacgga catascgtaa aataaaattt acgtggtgcg       120
     tttacttcgt caagaagaaa gcatacgaag atgccgcgga cgactcggtt aaaagctaaa       180
     aacaccgacg gagccggcga cgagtcaacg gacgaggatc aacgcttaga ggctttacaa       240
     gccacgcact cggaccccgc ggcaacgccg aatacgggac gccgcgacga cttaatcggg       300
     atctccgaag agcaactggc gaggctgatc gccaatgtca tcggaagggt cgggacaccg       360
     ccgccaaccg gcgagcgagg aggccccact ccgaccccat cgaccgtgac ttgctcggcc       420
     ctgagttcgt caggcaattt ctcccgatgt acagctcgat tcgacggcgc cgctcggagt       480
     gccgatgaac tggaagcctt cgtggacaac gtcaccgtgt ataaagagtg cgcgtcggtg       540
     agcgacgagc atgcgctgcg tggccttgcc atgctgcttg ccggagaagc cgccgtttgg       600
     tggcgcggcg taaaggcagc ggtgacgacg tgggatgagg cgatacgacg actacgagcg       660
     atgtacggca cgccacgccc ggccacaaga ttcttcgcga gattttctcc cgcgaacaag       720
     gcgacgaacg agtggacact ttcgtttcgc gagtgcgcgc taacctcgcg aggttacctt       780
     atagtgtccc cgaagagatg caaatagata tagtgtatgg attactaaac cgtagaatta       840
     ggaaacgtgt gactcgtgaa agtgttgctg cgggactcga cggtctcctc gagcaagtca       900
     ggtgtgtaga ggagtcactg ggcgaggtaa ggtctttgtt acacaatccg agcggggaag       960
     gcacgagcgg ttttaaacaa gcsggtagtt gtgatacagt tgtacccgtc acgtctaatg      1020
     ttcccaaaga tgttaatacc ccctgttcta gttcaaacga taataataat tcgttacaaa      1080
     aacgcgtgag gccgcggtgc gcttttgtag gcggttcggc cattctgtag aagagtgcaa      1140
     aaaaaagccg aaaaccgatg atagtgagac acaaaaggta cccctatcat gttatgggtg      1200
     tgggcgacag ggaacgattc gctcaaagtg ccctcactgc aaaagcggag tccccgataa      1260
     ggtgagtttc caaagcgttt ttacccagga ttttgatccg gtacggcctg tcataaagat      1320
     acaggttgct tcattaatgg gcgtcgccgt actagacacc ggcgccaccg agagcctcgc      1380
     tagtcccggg ttatatagaa tattagcgaa taacggaacc gttttcgaaa aggcgcaacg      1440
     gtctatatgt cttgcagacg gcactcagca ggtacgtact gttttgtcat gtgaaacgac      1500
     tgtcactgtt tgcggacgcg gtatcactac gactttttta gcgatgccgg aagcaaataa      1560
     tcgtacgctc ctgggccaaa actttattgc tcaagcaggc atcctcctta acctcgcgca      1620
     gagctgctgg tatttttcgg acacaccaaa acawaaatat ccgtttacgc gttcgtatag      1680
     ccttacgaaa actaacgatg cagaattaat gctagctaat acgagtcamc tcacactgac      1740
     cgataatgag ggatccaagc tgtcaccctc tcaacggaca cagttgaatc agctgatagt      1800
     cagcagagct gaacgmttcg ctactgaagg acctccaact acctatgcta cccatcgcat      1860
     ccgggtggat gagaaggagg agccgaccgc ttccccaccg taccggatgt ctcmaggtaa      1920
     gaaggagctg ttggatggcg agctcgagaa gctgctgcgt gcagaggtga tagaggagtg      1980
     cgagtcgccc tgggcggcta atgtagttct agtctcgaag aaggacggcg gmgtccggct      2040
     gtgtgtagac taccgtaagc tcaacgccgt gactaagccc gaccggtatc cgcttccgcg      2100
     cctggaggat gtactccatg ctgccaaaac gaccagctac atgacgacac tcgacctcca      2160
     ctctggctat ttccaggtat gcgtcgcgga agaagaccgc gacaaaacgg ctkttgtcac      2220
     accttccggc acatttagat ttatcaggat gcccatgggt ctacgtaatt caggtgccac      2280
     atttcagcgg ctcattgata ggttcaagtc gaacttgaac gtccatcgcc gagctccgaa      2340
     ttctgatggt gccgaagtgt atggatcaga cctcgtaggc agtagaaccg tgacgatttt      2400
     aggttatctc gacgatctga taatcctatc gccatctttc gaagagcata tcgaggacct      2460
     cgaagcagtc ttcgagagac tcgaaatgtt cagtctgcgg gttaacagga agaagagctg      2520
     tttcgcttgt gattcagtga aattcctggg tcacataatc gttcctggcg gactgcaagc      2580
     ggatccaagc aaaacctctg cgattgctga catgcctgag ccgaagaccg agagacagct      2640
     gaagggattt ttagcgacct ccagctggtt ccggcgcttc gtgcctgggt acgctaacgt      2700
     cgcgaaaccc ttgacagatc tgctgaagaa gaacagcaat tggcaatggg gagacgcaca      2760
     gcggaccgct tttgagcgct tgaaagagct cttgatcacc gcgccgatmc tccgccaggc      2820
     cgatgagtcc aaacctttct cccttatgac agacagcagc gggtactgtc tcggcgcagt      2880
     tctgatgcag ggggagggcc ccgatgaaag acccatagag tacgccagcc gcctcttaga      2940
     gccggctgag cgaaattaca ccacgaccga acgggaagcc ctcgctgttg tctggtcagt      3000
     gacaaagttt aggggctata tagaggggtc cgaagtagtg gtaaaatctg accatcagcc      3060
     tctgcgatgg ctgatgaacc ttaaatctcc cagcggccgc cttgcgaggt gggccctaac      3120
     cctccaggct tacaatttgc acatacaata cactccaggt aaggtcaacg tgatagccga      3180
     cacgttgagc cgccccgcct gttgcgaggc aaccacaggt ggatgcgaga tatgtctggc      3240
     aactgtcgat gtgccgcgca agtcgcctag tgaggtacgc gagaatcaac tcaaggatcc      3300
     cgwactaaaa ggtatcatag aggacctaga ggataccgac gatttgttca gggggagggg      3360
     ttggtcaaat cgcgggtatt tgatatcgga tggagtatta tataggtgta cacccgaggc      3420
     cgaagacctc gattccgcct gtctcgtggc tccaaagcac gagagggacg gtgtccttgc      3480
     cgactaccat gacgctccga ctgcaggcca tttcggcgcc gagcggacgt tgcagcgtat      3540
     cagcaggaaa tattactggt caggtatgag agcttttgtt tacgattatg taaaacactg      3600
     ctcagcttgt cagcggtata aagctgataa tagaagaccc acgggactgc ttcaaacacc      3660
     cgcaccaact cgacggtttg aagtgctgtc cgtggatttg ttcggccctt tgccgaagac      3720
     atccaaaggg tcgcgctgga tcttaatcgc agaagacacg tgttctcgat gggtcgagct      3780
     ttttgcttta gagaacgcca ccagcattga atgtgctgag acgcttatat ccgaagtatt      3840
     tctgcgattc ggggtcccgc gtaggataat tagcgacaac ggggttcaat tcgttgcaga      3900
     agtgatgcaa caagtctgtc acgtgatggg gatcaagcaa tgcttgacgc cgttgtacca      3960
     ccctgccgcg aaccccgttg aaaggaaaaa ccgcgacctg aaaccgcaac tggctatact      4020
     ggtgggcaaa gaccattcat catgggatwc gcacctcgga gccataagat tcgcgatgaa      4080
     ctccgccacc acggccagta cgggcttttc accagctttc ctcactttcg ggagagagct      4140
     gcgcgcgcca gctgacgtcg tggccgatat gaagaccatc gtggataatg ataacttcat      4200
     tgctaatgtt acgccctatt tgcgtaagtt gtcgacagcg ctcctcgacg ctagggatgt      4260
     tcacgaacgt ggtcagtcgc ttcataagca gtatgcagac gaaggtagac gtccacccca      4320
     gaatacaagg tgggtgattt agtcctaata aagacacagg ggataaatga cgcgggccct      4380
     gggcaatgcg ccaaatttat accacggagg gatggccctt ataagatcaa agaagtggcg      4440
     agccctacca cctatttgtt agtgaatacc cgcggwggcg aacaggttgg acgttaccac      4500
     gtgtctcact tgactccgtt tgtcggcgat gttgaggccc ccgttagaga aaagcgcaaa      4560
     cgtggcagac ctcgtaaggt agcaggttct agtccgaacg cgaggacgac ccgttcgaac      4620
     tagaggggga gta                                                         4633
//
ID   Gypsy-55_MSe-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-264
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 981-981 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 4-bp TSDs. There are only 2
CC   full-length copies of Gypsy-55_MSe in the genome.
XX
SQ   Sequence 264 BP; 61 A; 92 C; 53 G; 55 T; 3 other;
     tgtaacgcac tggaaataca tcacgatcca ttcgcgcggc tctgtgccta ccccacgcgg        60
     aatatatggt cgcggctata cctcgccccg cgctcactcw cccgctcccg cagctgcgcc       120
     gcgtccacgc ggcgcgcgcg tckccagtcg gcccgcaaca acacgacgcg acataggtct       180
     gtgtatgtac ttamcttcga accgaataaa actttataaa tttacacccg cgtatattat       240
     tatatgcccc ccaacaacat taca                                              264
//
ID   Gypsy-55_SiCu-I repbase;    DNA;    INV; 4485 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4485
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5075-5075 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..4482
FT                 /product="Gypsy-55_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPRRKTRNGPQTEEENGSSSPPVDTQGLVQLLAQQQS
FT                 VLTSIAQTLANQQAASGGTSSSTTTAAPPPPPPSSSSVLPVVRSIQLPKLA
FT                 APEELTIPSFRDWKQRWEDYSKSHQLGNHPVDTQHGILRSALHQEWTMLWS
FT                 SERLHITSTTTSDEAIGLLEAYLRRKRNPLLDRQEFHRRDQQPGESVDRYY
FT                 STLRTLDDACSHEMDFSCGSCTGSCTTSCDDCGHHFALARHLQETRIRDRL
FT                 ICGLLDKDMQRKVLAEQYSSVLTLEKVLSICVAMENSTSVGATLSAPPGSS
FT                 EAFATSKKQSSYKKKQHQKQSSPKEADSADSCWGCGKSPRHPKSECKAKDA
FT                 NCKQCGRTGHYTRLCKGHKKKSEGRQQPPSPAASNNNTVVVAETHQLLKVA
FT                 TVINSKTCHIMWLPDTGSEADLISESDFRKLGDSVTSALSSKTIDVVAANG
FT                 TGLGSIGSVTATLTLNGRSYHTTIGVCKSVNAPLLSRKGCIALGLIQEDWP
FT                 YNMASSSPPXTSSNAITAGKKVTTRPPPRSSSSTTKEDILASHADAFDDTV
FT                 LRPMNGPPMSIDLMEGAVPSQRYRAYNIPFHWRDKVKEQLDSMVTKGVIEP
FT                 VPVGEAIDWCHPMVVVPKKGSAEPRITVDLTGLNKYVRRPAYPVKVPKEAV
FT                 ARIPPGMKYFTTLDARHGYWQVALDEPSKKLTTFITPWGSFRYCRNVMGLI
FT                 SAGDEHNRRGDEALQGIQNVEKLVEDIIIFDKDLPTHIERVKQVVSRCQEN
FT                 GITLNAKKFIFAQPEVDWCGFRVTSQGYTPAPHLYSALANFPVPTSKTDVR
FT                 SFNGLVQQFEAFSHKITEMSAPIRSLLSAKAVFVWEEPHQRAFDAIIKELC
FT                 SPRILAQFQPNQPLRLETDAAQSKGLGYALYQQQDNGDWRLLQVGSRYVTP
FT                 TEARYSASEVEMLAVVWAVKKCRLYLLGHPFELIVDHRPLIPIINSKTLDE
FT                 IENPRLQRFKEKLSSYRIHAIWRAGVKHTVVDVFSRFPVADPDEDDLQMGL
FT                 DEDPTPLLIAAVQRADDGSSLLYDPLLQSVREAAADCSEYRRLREYIVRGF
FT                 PSKEKLETDLHPFWKVRNDLSIPNGLIFLGSRLLIPKILRPAVLKILHASH
FT                 QGQDRTLRRARQSVFWPGVSNDIRNVVSSCKECAAYLPSHQKEPLQSEPPP
FT                 SYPFQQVGVDLFSHAGYEYLVMVDRFSGWVNVAKCGTSASTGTVIHHLKRW
FT                 MTDLGIPEKLLSDNGPQFSSQEFRNWTKKWHISHATSSPHFPQSNGLAESA
FT                 VKAIKFLLAKSTTNGDLSSEAFQDGLMELRNTPRSDGRSPAQLLFGAPTRT
FT                 KLPLHRSRFADEWKGKSAACDERASRLKEKAQLRFSLNAKPLPKLIKGDVV
FT                 LVQDPKTRHWNLLAEVVEAHHLGRSYILRSESGRVLRRNRRFIRRFTPEKE
FT                 DTPDVEPPSPPRRSKRSRKPPKRFANFIGFSQEGQISGR"
XX
SQ   Sequence 4485 BP; 1120 A; 1348 C; 1044 G; 972 T; 1 other;
     tggcgcagtc gacaatttaa ttaaaaatcg cctttttaat tgtatttagc gttagttaaa        60
     attttttttt ggtgtcgtgt tttttgtagt ggccaatagt ttttcgttcc ttcttcagcc       120
     atcatgccga gaaggaaaac aagaaacgga ccacaaacgg aggaggaaaa cggatcttcc       180
     tcccctcctg ttgacacaca gggtcttgtg cagcttctcg ctcagcaaca gtccgtcctc       240
     acctccatcg cccaaacgct tgccaaccaa caagcagcct ctggagggac ttcatcgtca       300
     acaacaacag cagcaccacc acccccacct ccttcatctt catcggtact ccctgtcgtg       360
     cgcagtatcc aactcccaaa gttggcagca ccggaggaac tcaccattcc ttctttccga       420
     gattggaaac agagatggga ggattactcc aaatcccacc aactgggaaa tcatcccgtg       480
     gatacgcaac acggtatcct acggtcagcc cttcatcagg aatggacgat gctgtggagc       540
     tcggaacgtc ttcacatcac atccaccacc acttccgatg aggcaattgg gttgttggag       600
     gcttacctcc gtcgtaagcg caatcccctc ctggaccgtc aggaattcca taggagggat       660
     cagcaacctg gggagtcggt ggaccgttac tactccaccc tccgaacttt ggatgacgca       720
     tgctcacacg aaatggactt ttcgtgtggc agttgcactg gatcttgcac cacctcctgc       780
     gacgattgtg gacatcattt tgcactcgcc cgccacctcc aagaaacacg gattagggat       840
     cgccttatct gtggcttgct tgataaggac atgcaacgga aggtgcttgc cgagcagtac       900
     tcatctgtac tgaccctcga gaaggtgctt agcatttgcg tcgctatgga gaatagcacc       960
     tccgttggcg ctacattatc agcccctcca ggatcctcag aagccttcgc cacgtccaag      1020
     aagcagtcat cctacaaaaa gaagcagcat caaaagcagt cctcgcccaa agaagcggac      1080
     tcggcagatt catgctgggg atgtgggaaa tccccccgtc atcccaaaag cgaatgcaag      1140
     gcaaaggatg ccaactgcaa acaatgcggg cgtaccggac actacactcg cctctgcaag      1200
     gggcacaaaa agaaatcgga gggtcgacaa cagcctcctt cccctgcagc ctccaacaac      1260
     aacaccgtcg tcgtcgccga aacacatcag ctgttgaagg tggccacggt tatcaacagc      1320
     aagacgtgcc atatcatgtg gcttccggat actggatcag aggcagatct catcagcgaa      1380
     agtgactttc ggaaacttgg tgattccgtc acctctgctc tctcctccaa aacaatcgac      1440
     gtcgtagcag caaatggcac tggactggga tccatcgggt cagtaacagc aacactgacc      1500
     ttgaacggaa ggagttacca cacaacaatc ggtgtgtgta aaagcgtcaa cgcacctctc      1560
     ctcagccgga aaggatgcat tgctctggga ctcatccaag aagactggcc gtacaacatg      1620
     gcttcatcgt ctcctcccca macctcttcc aatgccatca ctgctggaaa gaaggttacg      1680
     acaaggccac caccacggtc ctcatcttca acaacaaaag aagacatcct tgcttcacat      1740
     gctgatgcct tcgacgacac cgtcctccgc ccaatgaacg gcccaccaat gtccattgac      1800
     ttgatggaag gagcggtgcc gagccagcgc taccgcgctt acaatatccc cttccactgg      1860
     agggataagg tcaaggaaca actcgactcc atggtcacaa agggggtcat cgagcctgtc      1920
     cccgttggtg aggccatcga ctggtgtcac ccaatggtcg tcgttcccaa gaaaggatcc      1980
     gcagagcctc gcatcacggt ggacctcacg ggcttgaaca agtacgtccg ccgcccagct      2040
     tatccagtga aagttcccaa agaagccgtc gcgcgaatcc cacctgggat gaaatatttc      2100
     accactttgg atgctcgcca cggatactgg caagtggctc ttgacgagcc cagcaagaaa      2160
     ttaacaacgt tcatcactcc atggggtagc ttccgctact gtcgcaacgt catgggactc      2220
     atttcggcag gtgatgagca caatcgccgt ggtgacgaag ccctccaagg aatccaaaat      2280
     gtggagaaac ttgttgaaga catcatcatc ttcgacaagg accttcctac acacatagaa      2340
     cgagtgaagc aagtggtctc ccgatgtcaa gaaaacggga tcaccctaaa cgcaaaaaag      2400
     ttcatttttg cgcaaccaga agtggattgg tgtggctttc gcgtcacctc acagggctac      2460
     acaccagccc ctcatcttta ctcggctctg gctaactttc ccgttcctac tagcaaaacc      2520
     gatgtccgct ccttcaacgg ccttgtacag cagtttgaag ccttctccca caaaatcacc      2580
     gagatgtccg ctccaatccg ctccctttta tcagcaaaag ccgtgttcgt atgggaggaa      2640
     ccccaccagc gagcgttcga cgccatcatc aaagaactgt gcagtcctag gattctggcc      2700
     cagtttcaac ccaatcagcc acttcgtttg gagactgatg cagctcaatc caaaggactt      2760
     ggttacgccc tctaccagca gcaagacaac ggtgattggc gactccttca ggtcggttcc      2820
     cgttacgtca ctcccactga agcccgctac agtgcctctg aagtggaaat gctcgcagtc      2880
     gtctgggcag tgaagaagtg tcgcctgtat ctactgggcc atccgtttga gcttatcgta      2940
     gatcaccggc ccctcatccc gatcatcaac tccaagacgc tggacgagat cgaaaatcct      3000
     cgtctccagc gcttcaagga aaagttatct tcttatcgca ttcacgcgat ttggagagct      3060
     ggcgtgaagc acacggtcgt ggacgtgttc tctcgttttc ccgtggcgga tcctgacgaa      3120
     gacgatctcc aaatgggttt ggacgaagac cctacgcctc tcctcatcgc tgcagtacaa      3180
     cgtgcagatg acggttccag cctcctctac gaccctctgc ttcaaagcgt tcgtgaagct      3240
     gcagcagatt gtagtgagta ccgccgcctc cgggagtaca ttgtacgtgg attcccgtcg      3300
     aaggaaaagc tcgagacgga cctccacccg ttctggaaag tcaggaatga cctcagcatt      3360
     ccgaacggac tcatctttct tggatcccgc ctcctcatcc caaaaatcct ccgcccggca      3420
     gtactcaaga tactgcacgc atctcatcag ggtcaggacc gcactctccg ccgtgctcgc      3480
     caatccgtct tctggccagg cgtgtccaac gacataagga acgtcgtcag ttcctgcaag      3540
     gagtgtgcag cgtacctccc ctctcaccaa aaggaaccgc tgcaaagtga gccaccaccg      3600
     agttacccct tccagcaggt cggagtagac ctcttttcgc acgccgggta cgaatacctg      3660
     gtcatggtgg atcgattcag cggttgggtc aacgtggcaa aatgtggaac aagcgcctcc      3720
     accggcacag tgattcacca tctcaagcgg tggatgaccg atttagggat tcccgagaag      3780
     ctgctcagtg acaacggacc gcagttttct tcccaggagt tccggaattg gacaaagaaa      3840
     tggcacatca gtcatgccac ctcttctcct cattttccac agtccaacgg actcgctgag      3900
     tcagctgtga aggccataaa atttcttttg gccaagtcaa ccacaaacgg agatctctcc      3960
     agtgaagcat tccaggatgg cctcatggaa ctccgtaaca cgcctcgttc agatggtcgg      4020
     agtccagctc aactcttgtt cggtgctcca acccgcacca agttaccact ccatcgcagc      4080
     cgcttcgcag atgagtggaa aggaaagtca gccgcctgtg acgaacgagc atcccgcctc      4140
     aaggagaaag cacaactccg cttttccctg aacgccaagc ctctcccaaa gctcatcaaa      4200
     ggagacgtcg tcctcgtcca ggaccccaaa acccgccatt ggaacctctt ggcggaagtt      4260
     gtggaagctc atcaccttgg gcgcagctac atcctccgtt cggaatccgg tcgtgttctc      4320
     cgccgtaatc gtcgcttcat tcgccgcttt actccagaga aggaagacac gccagacgtg      4380
     gaaccacctt cacctccaag gcgttctaag cgctccagaa aaccccccaa acggtttgcc      4440
     aactttattg gattttccca agaaggtcaa atctcaggga gggca                      4485
//
ID   Gypsy-55_SiCu-LTR repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-306
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5132-5132 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 306 BP; 86 A; 89 C; 50 G; 81 T; 0 other;
     tgtggtatgt ctcacgatac ccctctacca gcggcgcctc caaatctctg ccgttccgtc        60
     ggagacaacc cggcaaccaa tcagatgcct ccacctcatc ctaagccacg tcagcagaag       120
     aagaagaggc aatgcgagct tgatcccact cgccatcatc attctcatta ctactttcgt       180
     cttgtccatc agacaagaga ttctgtcata ttattattct cattgtaata aaataattag       240
     ttaaatataa ctaaccgtgc taacgcttcg aacctcatta tcgtcaccat cagtcgtgat       300
     agcaca                                                                  306
//
ID   Gypsy-55_SpEx-I repbase;    DNA;    INV; 4406 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4406
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4122-4122 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..3191
FT                 /product="Gypsy-55_SpEx-I_1p"
FT                 /translation="MPIGKIHAFDLDGGENWPAYVRLVEQFILLNDIKDNL
FT                 RVATLVTHVGASTYRLMCDLCAPDNPEDKTFSTLVELVKNHLEPKRSEIAE
FT                 RHVFRQRRQGEGESIKVFLQNLKHLATHCNFENQLEVNLRDQFVSGLRSEE
FT                 IRSRLFTETTLDYKKAVGLALALEAAEQHAAKAVAPAALWAAAGPAGLQAD
FT                 AGERVHRVSVANQANAAGRDDAAPRREGCWRCGRAGHAAHRCRYKSYVCEK
FT                 CKVKGHLRSVCDNKNVSARRSSSKYQNFIETDSGESGSEEFEGLYTIKGET
FT                 VQNVKDGPYYCELIVENIKVLFEIDTGSKISAVSKLFYDQHLSTLPIEKVN
FT                 IKLKSYTGDAIVPLGRVSVRVSCAGAKHTVLTLFIIENGGPPLIGRTWMRE
FT                 LKLKSLNLFNLKEDVDPVVIELKQEFPEVFTDKIGTYKHKLTLYLIDNTPI
FT                 FCKSRPLPLALREPVENELKRLQDEGIIYKVDRSDYGTPIVPIIKPDGSIR
FT                 LCGDYKVTVNKLLKDVHFPLPKIEEMFAALSGGEQYTKLDLKNAFMQLELS
FT                 EKSQPLTAITTHVGTFIYRRAPFGLKCLPESFQKIVSETLSGLEYVVAFID
FT                 DICVSGRNKSHHLENLKKVLSRLREAGLTIKFSKCEFLRDEVCYLGYRITK
FT                 HGLYTDTSKVNAILKMPIPENVSQLRALLGFINYYARFIPNLSTILHPLHA
FT                 LLKKGVKWVWSERCNAAFEEIKMRLTSDPVLAHYSPELPLVLAVDSSAYGL
FT                 GAVLSQRHPDCSERLVCCASRTLNDAEKRYSQVDKEALAIVYGVTRHHQYL
FT                 FGRQFTLKSDHKALSYIFGPKKGIPQTAASRLQRYAVRLAAYDFNIIFVNS
FT                 EKNCNADGLSRLPLTKTKLEDPDDAAYLHFVEDSFPLSHKDIAQATKEDKI
FT                 LCKVYGYIMSGWPLIGDAEEMKAYYHRRENLQIDHGCIVWGYRIVVPERLR
FT                 AQILEEVHAGHVGVVRMKSIARSYVWWPRLDSDIEARAAACAACRLQLDAP
FT                 PKHTPVPYVWPSEPWTRLHVDFLQYQGKYYFLILDSHSKWIEVF"
FT   CDS           3164..4027
FT                 /product="Gypsy-55_SpEx-I_2p"
FT                 /translation="LTLQVDRSILMGTGTSAQLVSNRLRECFSRFGLPKSL
FT                 VSDGGPPFRSEEFELFLARNGIKHILIAPYHPSSNGAAENAVKTVKKVIKK
FT                 AASEGQNIERAINNFLLVYRNSTHSSTQREPAVALLGRRLRMRLDLLRANP
FT                 LDAVEAAQTKQVIHARGMHREVQPGEQILFRNYSKNNPKWMEGQVSERTGA
FT                 VTYKVMTDHGEYRKHIDQIMPLRKLTRSSNPLISDADSPTVNNNQEDFESA
FT                 PNSTATSSLETSHESPVIHESISGNWVNNKPRNLKIHNKNNESLVEL"
XX
SQ   Sequence 4406 BP; 1321 A; 854 C; 1033 G; 1198 T; 0 other;
     gtggcgacga gttttatttc tttaaaataa aaaaaaacaa gatgcctatc gggaaaattc        60
     atgcatttga tctcgacgga ggtgaaaact ggccagcata tgtgcgttta gtggaacaat       120
     ttattttact caacgacata aaagataacc tacgcgtagc cacgttggtg acacacgtgg       180
     gagcgtcgac ctaccggttg atgtgcgatc tatgtgctcc agataatcca gaagataaaa       240
     catttagcac cttagtggag ctcgtgaaaa atcatctgga accaaaaaga tcagaaatag       300
     ctgagcgcca cgtgttccgc cagcggaggc agggggaagg tgaaagtatt aaggtgtttt       360
     tacaaaactt aaaacacttg gctactcatt gcaatttcga aaaccagttg gaagttaacc       420
     tgcgagatca attcgtgtcg ggtctccgta gtgaagagat aagatctcgc ctatttacgg       480
     agacaactct cgactacaag aaggcggttg ggctggcgct ggcgctggag gcggctgagc       540
     agcacgcggc taaagccgtg gcaccggccg cgctgtgggc agcagccggt ccggcgggac       600
     tccaggcaga cgcgggcgag cgcgtgcacc gggtgagcgt ggccaaccag gccaacgccg       660
     ccggacgaga cgacgcggcg ccgcgacgcg aagggtgctg gcgctgtggc cgggccggcc       720
     acgcagcgca taggtgccga tacaagtcgt atgtatgtga aaagtgcaaa gtgaagggcc       780
     atttaaggtc tgtatgtgat aataaaaatg tgagtgcgcg tcggtctagt tctaaatatc       840
     aaaacttcat agaaacagac tccggtgagt ctggcagtga ggagtttgaa ggattgtata       900
     ctattaaagg tgagacagtt caaaatgtta aagacggtcc ctattattgt gagttaattg       960
     tggaaaatat aaaagtatta tttgaaatcg acacgggcag caagatatcg gcggtatcga      1020
     aattgtttta tgatcaacat ctttctacct taccaattga aaaagttaat attaaattga      1080
     agtcatatac aggtgacgca atagtaccgt taggtcgagt atctgtgcga gtcagctgtg      1140
     cgggagcgaa gcataccgta cttacattgt ttattatcga aaacggcgga ccgccgctta      1200
     tcggccgcac ctggatgcgc gaacttaaat taaaatcatt aaatttattt aatcttaaag      1260
     aagatgttga tcccgttgtg attgaattaa aacaagaatt cccagaagtg ttcactgata      1320
     aaattggtac ttataaacat aaattgacac tatatttgat tgataacacg ccgatatttt      1380
     gcaagtcacg ccccctccca cttgcattgc gcgagccagt ggaaaatgaa cttaaacgct      1440
     tacaagacga aggtataatt tacaaggttg atagatctga ttacggaact ccaattgtgc      1500
     caattatcaa acctgatggt tctattcgtt tatgtggcga ttataaagtg acggttaata      1560
     aattattaaa agatgttcat tttccattgc caaaaattga agaaatgttt gcagcgctaa      1620
     gtggtgggga gcaatatact aaattagact taaaaaacgc atttatgcaa cttgaattat      1680
     ctgaaaagtc acaaccgctc acagcgatta ctacacatgt agggacgttt atttatcgca      1740
     gggctccttt tggacttaag tgtttacctg aaagttttca gaaaattgtt tccgaaacat      1800
     taagcggtct cgaatatgta gtagcattta ttgacgatat ttgtgtgagt ggcaggaata      1860
     aatctcatca tttggaaaac ttaaagaaag tgttgtctag actaagagaa gccggattaa      1920
     cgataaagtt ttctaagtgt gaatttctaa gagatgaggt ttgttacctg ggatatcgaa      1980
     taaccaaaca tggcctttac actgacacat caaaggttaa tgccatatta aaaatgccta      2040
     tcccggaaaa tgtatctcaa ttacgcgcct tattaggttt cattaattat tatgcacgtt      2100
     ttatacccaa ccttagtacg attctacatc cattacacgc ccttttaaaa aagggtgtta      2160
     agtgggtgtg gtcagagagg tgtaatgctg cttttgagga gataaagatg cgattgacaa      2220
     gtgatccggt gctggcgcac tactctccgg agctgccgct ggttctggca gtagacagca      2280
     gtgcctacgg cctgggcgca gtgctgtcgc agcgccaccc tgactgtagc gagcggcttg      2340
     tatgctgcgc ctcgcgcaca cttaatgatg ccgagaaacg atatagtcaa gtggataagg      2400
     aggcattagc cattgtgtat ggagtcacga gacatcatca atatcttttt ggtagacagt      2460
     ttacacttaa gagcgatcac aaagctttaa gctacatatt cggtcctaaa aagggaatac      2520
     cacaaacggc agcgagtcgc ttgcaaagat acgcggtgcg gcttgcagct tacgatttta      2580
     atataatatt cgtaaattcg gaaaagaatt gcaacgctga tgggttatca cgattacctt      2640
     taacaaaaac taagttggaa gatccagacg acgcagcata tcttcatttt gttgaggata      2700
     gttttcctct tagtcacaaa gacatagcac aagcaactaa agaagataaa attttgtgta      2760
     aagtatacgg ttacataatg agtggctggc cacttatagg agatgctgaa gagatgaagg      2820
     catattatca ccgtcgtgaa aatttacaaa tagatcacgg gtgtatagtt tggggataca      2880
     ggatagtggt gccggagcgt ctgcgtgcgc agatcctgga ggaagtgcac gcgggtcacg      2940
     tgggcgttgt gcgtatgaag agcattgcgc gcagctacgt gtggtggccg cgtctcgata      3000
     gcgacatcga ggcgcgcgcc gccgcctgcg ccgcctgccg cttgcagttg gacgcgccgc      3060
     cgaaacacac tcctgtaccg tatgtatggc cttcagaacc ttggaccagg ctacatgtag      3120
     attttctaca gtaccaagga aaatactact ttttgatact tgactcacac tccaagtgga      3180
     tcgaagtatt ttaatgggca ctggtacttc ggctcagtta gtatcaaata gattaagaga      3240
     atgctttagc cgatttggac tccctaaatc tttggtaagt gacgggggac cgccctttcg      3300
     atctgaggag ttcgagttgt ttttagcccg gaacgggatt aaacatattt taatagctcc      3360
     ctatcatccc tcaagtaacg gtgctgccga aaacgctgtg aagacagtca agaaagttat      3420
     taaaaaagcc gcttctgaag gtcagaacat tgagcgagca attaataact ttcttttggt      3480
     gtatagaaat agcacacatt caagcaccca acgcgagccg gctgtagcac tgctggggcg      3540
     aaggctgcgt atgcgcttag atctgttgcg tgccaaccct ctagatgcag tcgaggctgc      3600
     gcagaccaaa caagtcatac atgctagagg tatgcacaga gaagttcaac ctggagaaca      3660
     aattttgttt cgaaattact cgaaaaacaa tcccaagtgg atggaaggac aggtctcgga      3720
     gcgtactgga gcggtaactt ataaggtaat gacggaccac ggggaatatc gaaagcatat      3780
     agatcaaata atgcctttac gaaaacttac acggtcctct aatcccctta tctcagacgc      3840
     cgatagtcct accgttaaca ataatcagga agattttgag tcagcaccga attcaacagc      3900
     gacttcgtct ctcgaaacat cacatgaatc gcctgttata catgaatcca tttccgggaa      3960
     ttgggtcaat aataaaccga gaaacttaaa aatacataac aaaaataacg aatccttggt      4020
     tgagctataa tcctgtcttg ttaaggcttt gtttgtagtc atttatattg ttttgtaata      4080
     gttgtagttt tttttttcct tctaatcctt catattgttt actatgaatt tgaataacaa      4140
     tatttttttt gtttctacaa atgttaatac ttaacgaaaa attaaatgaa taaattatct      4200
     tgtcgattat gtgattgtag taagaataca taaatgcagt atattgtaaa gtacagagaa      4260
     cctatgtata tggtaatgca ggtagacaca taatggatag gaatattttc atacactcgt      4320
     atgagcattg taagcagctg tttattttat ttcacttttg tttaacttac attatgtttt      4380
     acattaattt ctcgtgaggg aggaaa                                           4406
//
ID   Gypsy-55_SpEx-LTR repbase;    DNA;    INV; 83 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-83
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4184-4184 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 83 BP; 26 A; 14 C; 13 G; 30 T; 0 other;
     tgtgatatat tatggtaatg cgggtaaatt aacaataaat cagtctcgtt tcaaccgtct        60
     ttcattgagc atcatattct aca                                                83
//
ID   Gypsy-55_TrVa-I repbase;    DNA;    INV; 8615 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8615
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 300-300 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           738..1988
FT                 /product="Gypsy-55_TrVa-I_1p"
FT                 /translation="MSFDQQYLTRFRXERRPPVVNPSASSMSRQNENQPQX
FT                 VLVPEPREFLSNLPSNVPTNLPPPNLLLHLQSAFSPIRMFDPLRVNTQLMS
FT                 PPLFTQGAPAPNMSPEINGRQIIAEGTNHRSPMAENFQDSVLAQMLSEMQV
FT                 LNKNINQMIVNQASGNNAMNNFKSEESKVHRDMGRRPPSVLSISSGGDRCP
FT                 KPRHSSTMQFRDLPSFNGEESPIHPKDFLSEITLYYKSQNVSDEFQFNEIG
FT                 RLMTGRALPWYQVYMKSFTSFNHFSREFLKVFWGTRRQNKIRANIFTPEQY
FT                 TQEKGELSTYFLNEVRRASYLDDPIPEDVLVTTLFEHFPYDVYWSLISSNL
FT                 RTIDEVFIKLQDLEDARAKARARFNRNNQYHKNKPTPGPGARVNLVGIEGQ
FT                 TNDLTIPPPGFEVDDSLNTKSLN"
FT   CDS           1964..3373
FT                 /product="Gypsy-55_TrVa-I_2p"
FT                 /note="retropepsin."
FT                 /translation="FSQHQVFKLNGCWADQRSSSAGNIDKKYLCPPGTADK
FT                 KIFKCYEVELVIKNVPLSIFVVTSHKFVIPNGDITINGKNAKIWLRFEMIA
FT                 NSMRHVFTHLTDFKFSYSYYLLWLLDEEFVQDLNKMQNQPFIDQVPSDALK
FT                 IISKYVPMVVANLIPNHKEYLNNDHDCFNNLLSSHLKSISCNIHMPYFSDK
FT                 QSELKQPDSGKIKYFEALLGNSLDFINQLKSPSPQINTCQFSNDHFLLTED
FT                 PIQSCSVRYKSPYVRCNVAGQNMQVLVDTGSEVTLMSEAVFDSLCNTAGRP
FT                 FDMLPTTGLFLRGVTGVKSKLVKFQVFLELDFSGIVFRKAV*VVLNINVDF
FT                 ILGVDFLIQYRGKIDCAKQMLTLLDDKVNIPWTTHDQPKVNIMQTDQLKRT
FT                 PKLLISADSHGRGLAPILRRKLPQFSIDFILTPGAKFNEVLDQSHESVKLL
FT                 TEEDTFVIIAGSNNIDLSKSKEDIV"
FT   CDS           3372..6473
FT                 /product="Gypsy-55_TrVa-I_3p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="SEFNLKFFENIKCRVIIFEVFPRHDLLNAQPLVSAVN
FT                 LFLSVGLKKKKCQLIRASEFLSRKHFTDHGLHLKSNGKNALTSILAQTLEE
FT                 DPFVTEHNKISLAFANNLVVHDDLSNEDHNHATTNSNRVSIESGELSESTI
FT                 LEKISSLELTTNEKDQLFSLISRNKDIFSDKPGRCNCFVADFRFSDERVFV
FT                 RRSYPVPFAKRDMVRKEVERMLSLGVIERSSSPYSNPLVPVIKKDETCRLC
FT                 LDXREMNTKIIADTETPEPIDSLLYRFPNPSFISALDCTASFWQIPLGEKS
FT                 RDITSFSFEGKNYRFTVVPFGTKVSSPLFIKATDQVFGPEMEYFLSRYVDD
FT                 FKVVSRTFQEHLVHLETTFRKLRDAGMTLKFSKCFFVMSETDFLGYVISKS
FT                 GIKMNPDKVRAIREFPAPRNVKDLQSFLGLVNFYRRFSMKHSALIAPLLCL
FT                 LKKGTKWRWNSDEQACFENIKQIFIETIILSYPDFRKPFFINTDASFSAVA
FT                 GELFQVDENGDRCPVGYASRVLSPAEKNYTTTELELLAIVNACQKFRQYIL
FT                 GHSVTVLTDHHALTFLDKCVLTNSRLTRWSLYLQEYDLKVKYIKGSENVAA
FT                 DILSRYPPELHSLPPNNHEINVNAIFQVPKAIVKQLKSFHLAQQTDPKLKR
FT                 IYDKLANGTSFRGDKFHCLHNDIMFYQSVXNPEWRVCVPQSLQQEIIKSTH
FT                 ESIGHFGATKTYQHLKSYAHFPLLEKKVRKYVSACLDCQKCKITSKTSHAA
FT                 MAPIIADAPLTLASVDLYGPLPTGKGNFSYLMVVLDVFTKYVKLYPLRKAT
FT                 GVLATRKLLNDYARDVGVPKATLSDRGPCFRSNFWHSNLKANNIIPTHSSV
FT                 YHPASNPVXRYMRTLGNLFRLYCRDHHSKWVDYLKFFEDCLNHTYNDSTGS
FT                 VPVEVMKGIKPKNFLQDFIKFPENSNKISKELRLSLIKERTMNRAEKRKAN
FT                 HKSCHKYNDFKVGEKVLLKTHHLSNAAYGQIKKFFALYEGPYEIVEKKCNN
FT                 AFRLKEVDSDQIVGVHNIVYLKPFKSLH"
XX
SQ   Sequence 8615 BP; 2529 A; 1592 C; 1635 G; 2841 T; 18 other;
     gaaatggcgc ccagcgaaag tggcactgaa taaccttatt cagtaaccca cgacctaccc        60
     ggttcaattt atttcgtatt tttattgtgt tcaatttttt tttaattcgt gttttcatca       120
     tattttgtgt tgcgatacgc gatgttccgg tgaagtgctc attwgtattc ctccgcgccc       180
     tgtttccggg aaatgcttcg gacaacaacc tgctgacgtc acatcckcgc ggactacttt       240
     ccggtgacga aaccattcaa cggtgccacc ggtgatcgat ggagcataac ctcacagctg       300
     ctcttgttga caaaaacaac tagtcaacat gtktgtttac agackgatag tgagtgttcg       360
     ttcgcgagtt ccagtgccgg aaaatgactc aaagtcattt maatttaaat cgtggtgcga       420
     tgcaggctag cgctcgcamt ccatcggagg gtggacaagc ggaawmtggt acgttgagaa       480
     wattttaaga agactccgta ctccaamgtg ggtggattag cagaatgggc acctctgtct       540
     ctatcaccga gttgcgaccc atgcaacaaa tccaatgctc tcagtcaaat actaatttac       600
     atgggatttc gtttttgttc cagtgttccc cagttcttcg aaggattttt cccaggwttt       660
     gttgcatcgt tccaggtttt ataatttcwt ttatttaatt tttaattgtt ttgtattgtt       720
     aaattttgga agtggatatg tcttttgatc agcaatatct aacgaggttc cgcagwgaac       780
     gtaggccacc sgtggttaat ccgagtgcca gttccatgag tcgtcaaaat gaaaatcagc       840
     ctcagkctgt gttagtgccg gagccgcggg aatttttgtc gaatttgccg tcaaatgtgc       900
     caacaaactt gccgccccct aatttattac tccatcttca atcagcattt tctccaatcc       960
     gtatgtttga cccattgagg gtcaacaccc agttaatgtc acctccttta tttactcaag      1020
     gagctcctgc tcctaacatg tcgcctgaaa tcaatggcag acaaattata gcggaaggga      1080
     caaaccatcg gagtccgatg gcagaaaatt ttcaggattc ggtgctggca cagatgctga      1140
     gcgagatgca agtcctaaac aagaacatca atcagatgat agtgaaccag gcatcaggaa      1200
     ataatgccat gaataatttt aaatcagaag agtcgaaggt acaccgggac atgggacggc      1260
     gaccaccctc agtgctgagt atctcatcgg gcggtgatcg gtgccctaag cctcgacact      1320
     catcgacaat gcagttcaga gatttgcctt cttttaatgg ggaggaaagt cccatccacc      1380
     caaaagattt tttatccgaa ataactttgt attacaagtc acagaatgtg tcggatgagt      1440
     ttcagttcaa cgaaattggt cgtttgatga caggccgggc attaccatgg tatcaagtgt      1500
     atatgaaatc attcacatcg tttaatcatt tctctcgaga atttttgaaa gtgttctggg      1560
     gaacgaggag gcaaaacaaa atcagagcca atattttcac acccgaacaa tacactcaag      1620
     agaaaggaga actgtcaact tattttctga atgaagtgcg ccgggcctct tatttagacg      1680
     atccaattcc ggaggacgtg cttgtcacaa ctttatttga acattttcca tatgatgttt      1740
     attggtccct tattagctcc aatttaagaa ccatagatga agttttcatt aaacttcagg      1800
     atttggagga cgcaagagcc aaggcaagag ctagatttaa tagaaacaac caatatcata      1860
     aaaacaagcc gactcctggt cctggggctc gtgttaacct cgtaggtata gaaggtcaaa      1920
     caaatgattt gaccatccct cctccaggtt ttgaggtgga tgattctctc aacaccaagt      1980
     ctttaaacta aatgggtgct gggcagatca gagatctagc tcagcaggga acattgataa      2040
     aaaatattta tgtccaccag gtaccgctga caagaaaatt ttcaaatgtt atgaggtgga      2100
     attagtaata aaaaatgtgc ctctgagtat ctttgttgta acatctcata aatttgtcat      2160
     accaaacggt gacataacaa ttaatggaaa aaatgctaaa atttggctcc gatttgagat      2220
     gatagcaaat agtatgaggc atgtgttcac tcatttaaca gatttcaaat tttcatattc      2280
     atattatttg ttatggctat tagatgagga gtttgtacaa gatcttaata aaatgcagaa      2340
     ccaacccttt attgatcaag taccttctga tgctttgaaa ataatctcca aatatgttcc      2400
     gatggttgta gccaatttaa ttcctaatca taaagagtat ttaaataacg accatgactg      2460
     ttttaacaac ttgctatcat ctcatttgaa gtcaatttct tgcaacattc acatgccgta      2520
     tttcagtgac aaacagtcag aactgaaaca accagattct ggtaaaatta agtattttga      2580
     ggctttgcta ggaaattctt tagatttcat aaatcaacta aaatcaccta gccctcagat      2640
     aaacacttgt caattttcta atgatcattt tttgttaaca gaggacccaa ttcaaagctg      2700
     tagtgttcgc tacaagtctc cctatgtaag atgtaacgtt gctggtcaaa atatgcaggt      2760
     tttagtggac accggaagtg aagtcacctt aatgagcgag gcggtctttg actctttatg      2820
     caacactgct ggacgacctt ttgatatgct tcctactacc ggtctctttt tgcgaggggt      2880
     cactggagtc aaatccaaac tggtcaaatt tcaggtattt ttagagttgg atttctccgg      2940
     gatcgtgttc agaaaagcag tttaagtggt acttaacatt aatgtagatt tcattttggg      3000
     agttgacttt ttaatccaat atcgaggcaa aattgattgc gcgaaacaga tgttgacatt      3060
     attagatgat aaagtaaata ttccatggac tacccatgat cagccaaaag taaacattat      3120
     gcaaaccgat caacttaaaa ggacacctaa gcttttgatt tcggccgaca gccatggtag      3180
     gggattagcc ccgattttga gaagaaaatt accacaattt agcattgatt ttattttaac      3240
     acctggtgct aagtttaatg aagtcctaga tcagtcccat gagtcagtaa agttgctaac      3300
     tgaagaagat acgtttgtca ttattgcagg ttcaaataat atcgacttgt ccaagtcaaa      3360
     agaagacata gtctgagttt aatttaaaat tctttgaaaa tataaaatgc cgagtaataa      3420
     tctttgaagt ttttccgaga catgatctac tgaatgctca gccattggta tctgcagtta      3480
     atctgttcct gagtgtaggt ttgaaaaaga aaaaatgtca acttattcga gcatctgagt      3540
     ttttgagcag aaagcacttt actgatcatg gacttcattt gaaatccaat ggtaaaaatg      3600
     ctctaacctc tattttagcc caaactttag aagaagatcc atttgtcaca gaacataata      3660
     aaattagcct tgcttttgca aataaccttg tagttcatga tgatctcagc aatgaggatc      3720
     ataatcacgc aaccactaac tctaatagag tatcaataga gtcgggagaa ctttctgaaa      3780
     gcactatctt ggagaagatc agctctctcg aactgactac aaacgaaaaa gatcaacttt      3840
     tttcattaat atccagaaat aaagatattt tctcggataa gccaggaaga tgtaactgct      3900
     ttgttgcaga tttcaggttt agtgatgaga gagtatttgt gcgccgttct tacccagtgc      3960
     cgttcgcaaa aagagacatg gttcgcaagg aggttgagcg gatgttgagt ctgggtgtga      4020
     ttgagagaag ctcaagtcca tattcaaacc cactggttcc agtgatcaaa aaggacgaaa      4080
     cttgtcgttt gtgtctagat kcaagagaga tgaacactaa gattattgca gacacagaaa      4140
     cacctgaacc catagactca ctgttgtatc gatttccgaa tccgtctttc atatcggcct      4200
     tggattgtac agccagtttt tggcaaattc cgcttggtga aaaatcacga gacataacat      4260
     ctttttcttt cgaaggaaag aactataggt tcactgtggt accctttgga acaaaagtct      4320
     catcaccgtt gtttattaaa gccaccgatc aggtttttgg ccctgagatg gagtactttc      4380
     tgagtcgata tgtggatgat ttcaaagttg tatctagaac ttttcaggag cacctcgttc      4440
     atttggagac cactttcagg aaattaagag acgctggaat gaccctcaag ttcagtaaat      4500
     gttttttcgt aatgtctgag acagattttt tagggtatgt tatttccaag tcaggaatta      4560
     aaatgaaccc tgacaaagtc cgagccattc gagagtttcc agctcctcgt aatgttaaag      4620
     atctccaaag ttttttagga ttagtcaatt tttatcgtcg attctctatg aagcactctg      4680
     ctctcattgc tcctttgtta tgtttattga aaaaaggtac taagtggcgt tggaattctg      4740
     atgagcaagc ttgttttgag aatatcaaac aaatttttat tgaaactatt atcctttctt      4800
     atccagattt ccgaaaacca ttttttatca acacagatgc ctcttttagt gcagtggcag      4860
     gcgagctttt tcaggtggat gagaatgggg atcgttgtcc tgtcggctat gctagtcgag      4920
     ttttaagtcc tgcagagaaa aattacacaa ccactgagtt agagttgttg gccattgtga      4980
     atgcttgcca aaaattccgg caatacatac taggacattc agtgacagtg ttgacagatc      5040
     accatgctct caccttcctg gataagtgcg tcctcaccaa cagccgtctc acccgctggt      5100
     ccctttattt acaagaatac gatttaaaag tgaaatatat taaaggaagt gaaaacgttg      5160
     ccgcagacat attatcacgt taccccccgg aacttcatag tttacctcct aacaaccatg      5220
     agatcaatgt aaatgccatt tttcaagttc caaaagccat agtaaaacag ttaaaatctt      5280
     ttcatctagc tcaacagact gaccctaagt taaaaaggat atatgacaag cttgcaaacg      5340
     gtacatcttt cagaggagac aaatttcatt gtttacataa tgatatcatg ttttatcaat      5400
     cagttmacaa cccagaatgg agagtatgtg tccctcaatc tttacaacaa gagattataa      5460
     aaagcaccca cgaaagcatc ggacattttg gtgctaccaa aacataccag catttaaaat      5520
     cgtatgctca ttttcccttg ttggaaaaaa aggtacggaa atatgtgtct gcatgtttag      5580
     attgtcaaaa atgtaaaata accagcaaaa caagtcatgc agctatggca cctattattg      5640
     ctgatgcacc tcttacgctt gcatcagtgg atttatatgg gcctctccca actggcaagg      5700
     gtaatttttc atatttaatg gtggtgctag atgtttttac aaaatatgtt aaattgtatc      5760
     cattacgaaa agcaacagga gttttagcta ctcgaaaact tttaaatgat tatgctcgtg      5820
     acgtgggtgt gccaaaagca actttgtcgg atcgtggtcc atgttttcgg tcaaattttt      5880
     ggcattcaaa tctaaaagca aataatatta ttccaactca ttcttctgtc taccacccag      5940
     ctagtaaccc ggtagamaga tacatgcgca cattaggaaa cttgtttaga ctttattgca      6000
     gagaccatca cagcaaatgg gttgactatt taaaattttt tgaagactgt cttaaccaca      6060
     cgtacaatga cagtacggga agtgtgccag tagaagttat gaaagggata aaacccaaga      6120
     attttttaca agattttatc aaatttccgg aaaacagcaa caaaattagc aaagaattga      6180
     ggttatcttt aatcaaagag cgcactatga accgcgcaga aaagcgtaag gcaaaccata      6240
     aatcctgtca caagtataat gattttaaag ttggagagaa agtcttgcta aagacacacc      6300
     acttgtccaa tgctgcatac gggcaaatca agaagttttt tgcgttatat gaaggcccgt      6360
     atgagattgt ggagaaaaaa tgtaacaatg cttttcgctt aaaagaggta gattcagacc      6420
     aaattgttgg tgtgcataac atagtctatt tgaagccttt caaatctctg cattagaatt      6480
     tcgttgtctg attattgttt gtccctatgc gagctaaaat aggcagatca aaagacataa      6540
     cacttgcatt tgattaagtt tactgtgtcc actgttttta ttgtgtttaa ctttactatc      6600
     tttctctgat caatgttgtt ttgtttatgt tctcttgtat tgttgaatta tctcctttta      6660
     atttaagcaa tcattttttt tatactgcat tagagaaacc taagagttat aatttgtatt      6720
     aaagttcaat tagtgaagta agcaattaat caaaaaatta atattgatga ttaatttttt      6780
     tttttttttt tggagatggg gggttatcac caccccatac tgattttttt atatattttt      6840
     tttttcttcc tctctctctt tagtttttca tttaagtgta tagcattaag tttttatttt      6900
     aagttctttc atttgagttt atttgtgttt atctttgact tgtttacaat tttttttttg      6960
     aactgggtag gttcttttca aacaatttca taattttttt ttctctcctg tacctaatca      7020
     gcaacagctg tcaatttgat tgctgaaact ttatcaaaaa atttatttgt tcaaagccaa      7080
     agtccattta acacccatgt ttggaaagag acgaacatgt ttttgaacaa ccccgacaga      7140
     actgcaggcc ggatagtcca aaactgtcgg aggtaccccg taaatacttc tttatttttt      7200
     attttttatt ctttttagcg tctcaagaca gaaggaggta tcttggcgca ccctaatttg      7260
     tccctgtccc ttttagaata aaccacaata ggactgaaca ctggattgtg tgaaactatt      7320
     gatggatata tgcgattagt taatgaccag ctgatcgtag aacctgtgga gtgggagcag      7380
     actgggtcac ccacagtatg tcgtccttaa gtcaatgttt taggtatatg tatgtcactt      7440
     aaggaccaat gttgtcaaca gttgtctcac gataggctga gcatggagca gctgatggtc      7500
     aatttttttt tgcccctgtt aaatcattat tttttattat ttatcttaat tcacccgtat      7560
     tgctggttcg ttgaactgtt tgacattaat gtgtcatttt cattctggca tacagtatgg      7620
     gctacttgct agaacagtgt tgatgcattt ttgttaaaat tatatccttc atgtctgatc      7680
     aacatggtga atattagtac tacagccaag atgtgtaggc ttttcttggt atgggtatcc      7740
     tatttatttt tggactgtta cacaatttct tttgagattg agcctcacgg aaagttttgc      7800
     tgaatttagg tcaaggataa ctattttctc acagctaaat ttttttttaa attctgtctc      7860
     ttaaagacag tgaaactgtg gaaccgtccg accaaaatgc tgtcatattt ttttttctct      7920
     ctctttattt ttctatgttt gtcaaatttt ctatgagtct ggtcaaattg taatttctta      7980
     tgatttacca aattttgtat gttcattttt taggtttatg tttttctcct attttgtttg      8040
     atcactctct acattggacg attttgtttt ctctatagaa acaagccaaa tttatcgatt      8100
     ttttttagag aagtagatat gtttttcttc cttcaatttt aatatgtttt aaattggttg      8160
     ttgttaaact ttcttcttat gtctctagta ttttaagcgt aatcataagt tccatttatc      8220
     aatttctttt tgtttttttt cgtatggatt attataactg tccataattg ttttttatat      8280
     ttctttagtt ttttaataaa aggcgtttca tatatatata tattttaaaa gaaaagaaaa      8340
     agatcgaggg tgattgcagt tccatccgat tgattgctag gcatgctcta tagcatacaa      8400
     agctctgtcg cggcctggtc tgccctgttt gttttagcct cgcagactgg gtcattgctc      8460
     cgaaactcaa ctaatggtgt acctaacttt cctctctctt tttgcatttc gattaggttt      8520
     ttcttttgtt cttaatatca ggtcctgtaa agtttggaga tgcaaacttc ttgggtttct      8580
     ctttatcgag taatccaaaa agttggtggg gtctc                                 8615
//
ID   Gypsy-55_TrVa-LTR repbase;    DNA;    INV; 539 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-55_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-539
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 359-359 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 539 BP; 119 A; 128 C; 119 G; 167 T; 6 other;
     tgtaacatgg tggttcccag cctttaatta attcatgttt tcttcctctc ttctctcaac        60
     tctcattcct ggctttgagc cgatagctcc gttatcggct caaggtccct ctttttgtct       120
     ctctgctctc cactctcmaa ctttctcttt tcacactggg gtttcggggg atgattcagc       180
     cagatgtggt caatggccaa tcaggagaag ggacgctttc ttctggsgga ctgcatcgcg       240
     cgggggtgag acgcgttggg gtaggtcagg tccgcgtcag tcttattcag atcagtgaag       300
     ggatcataca cgaagatggg gtataatatt tattcgggct ggtcttctaa ggccagtccc       360
     tgagtgaaaa cacgtttcaa taacagcatc ggtcggatgg agctgtgcat cgctttcgat       420
     cacgccaaat ttaaatacwc gttttaaktt tatttaaaac ctccagttcs ttcccttwtc       480
     tcaaatactt aagattcaat atgtagctgt gcggtaaata ccaataagcc cacgctaca        539
//
ID   Gypsy-560_AA-I repbase;    DNA;    INV; 3986 BP.
XX
AC   .
XX
DT   08-MAY-2019 (Rel. 26.04, Created)
DT   08-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-560_;
KW   Gypsy-560_AA-I; Gypsy-560_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3986
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3986
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (08-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 3986 BP; 1363 A; 647 C; 841 G; 1135 T; 0 other;
     aatttggggg ctcgtccggg aagcatcgga atcgctagtt tgttaaggga cacgtgtgtt        60
     gaagtttttt gagaaatagt gtgaatagtc tgatttagag aattagtgat ttgtttgaat       120
     taaggaattg aacttgaata tagtgttaag gtaaaaatta aaaaagtgaa ttcaaaccca       180
     aatattagtg aactaagtga attactcagt gcaatttctt tatgaagaac agccaaagcg       240
     cgcgaaggtg cgtttttgtt ttcattctcg tgctattgat aaaagtaggg tgatgtgcta       300
     gtatccatcg tattaagcat tgatcagtga gaactgcaat tttcccagta ttgcagtgaa       360
     tgatgctgat acaaaccgat gccaaacaat tctttctcaa aacggcttta gcattgtaca       420
     ataacatttt gataaatctt gatctctttt tggaaaaaat gcaaagaaaa tgcatcttac       480
     cgtattctca atccgtcgta tcgttttcaa ctccgtcgca atcagtttcc agattcgtct       540
     cacagcttac ggctcactgt gtgtattgag tggttaaaac acaacatatc aacgctataa       600
     taaaatgttt tacaagaata tatagatcta cgggcatctc cctccatttc ctcagcatga       660
     tggaatatac taatttcctt taaaattaat tgttcgtcat taaaattcag accgaacata       720
     ttaacacaat tccttttgac cgtaaaatta tgacatttgc tcacagtaca gcgaaaacaa       780
     cacaatcaaa ggaatcgtat ttttacgtcg agcgtcgcgc acacattgat gcacacaagc       840
     ttttttttct cagtacgacg gattgaactt tgtttacatt cttaattata cgcggcggtt       900
     gaggaaattt cgtaaaattt ggtgatttat tgaagtttta cggcgtgtga ttggaatgaa       960
     atccttcagt gaagaagtac gaaggttttc catagtgaaa ataagtgccc ggcgaagtaa      1020
     gtcacccacg ggggcgggaa gaaacttgtg ttggaaagtg gtgtggctca gtcgatcgct      1080
     aagcatttct ctcaaatcgt gttcgtccat gcgatttcgg taaaaaagtg caaagtggat      1140
     gattgaactg aagttattta ccaaaataca gtagttttat tgcatttttg gtgtacaagt      1200
     gtacaaacca taacagcttt cacaaaatta tacttggata atcaatctat gttgcaggta      1260
     agtttgaata tccgccgtaa tggaacattt aaagtttgat acgacgaata gtagcgctta      1320
     cgacgaagaa gaacaaaacc ctacgcgcca aactgtacca aacagcctgc tcgccgtgcg      1380
     gcgccaaaac attctgttga ccggtcaaag ggcaacgaac agcagcgaaa aacaaacatt      1440
     acaaaatata accgcactca aagtgtatga gcaggtgtga actattgtcg tcaaagtgcg      1500
     aatttgtttg cccagaaaag tgatggcaaa cttaccaccg ttcgggtata acacccctcc      1560
     gcctcctcac caatatcctc aaccccgacc tatatcggta ggctctccga atcaccctgt      1620
     acctcagact ccaactgtaa ttaattatgg tataccagca cgtgatccga tcgagaatac      1680
     ttttacacgt atgatcgatc aactaaactt ttctaatatg agcgtagtga atttgaatga      1740
     gcaaataact gctatgcaaa atgcgataga cagtttaagg ctggaaaatt tcagactgaa      1800
     cagtgctttt gatgagatgc gtaccagtaa tgtgccactt cagggttgta gtacgccaaa      1860
     tggcgggaat atgtgccatg aagcggaaag gaacagaagt ggattttatg aaaataatga      1920
     gcaacgaaga attatgcatt gtgtaaataa tagtggtagc gatattcctg tcggcaattg      1980
     tcgaaatgac gaagaatttg caagggcaaa tagtttcaat aatagtggta attacgattc      2040
     agtcagatca gtgtgtaatg aagtcctaat ggctagaaac tgtaatgctt cggaaaggtc      2100
     tgaaggctgt aggcagaaca acgcaagtgt tggggttatc acaaatgtgt gttgtggttc      2160
     catgcgtaat aattgttacg aaggctttga tcatcgtctc acggtaggtg aaattgagtc      2220
     tgcttttact gatttttcgg gctccgatct tcattccgtg cgcaaatgga ttaacgattt      2280
     cgaagagatg gcagatgcaa ttggtttgtc tgacatgcgc aagtttgtag tagcgaagcg      2340
     aaaactaatt ggtttggcaa aattgtctat caatactgct catcatataa ttaactggag      2400
     ggcactaaga gatttcttgc ttactgaatt tgaacacaga gaaaatagcg caatggtgca      2460
     tgagaaacta agagcacgca aaaggaacat gggagaaaat gttctcgaat actttttggt      2520
     gatgagagag atcggagcaa aggcaaatgt tgactctgaa tcaatcataa cccatactat      2580
     aaatgggatt gatgataatg gccctgataa gatgttgctt tatggagcac aatctgttag      2640
     agaatttaga gaaaaattac gtgtttatca atcaatcaaa gatagtaaat ataacagtga      2700
     gaaccaacta gtgtacgtaa atgcagagaa aaggtacgga aatgttcgtt acgatggggg      2760
     ttgcaaacca aaatcgccaa atgggtataa taatgcacca gaaacaacaa agtgttatag      2820
     ctttggtaat gttggtcatt tagcaaggga atgcccaaaa agatttagtt ataaaaatgt      2880
     aaatatgtgt aatcctttta tggtttctaa tggaacgcgc atgactattt catttggtga      2940
     tctacctgta gaagcttttt ttgactctgg ggcagatgtc tctttattgc gagcggattg      3000
     ggccgacaaa ttaaatcttt tagttgatga gtgtgagaaa aagagattaa caatgctgaa      3060
     tgaaactgtc agtactttgg gttctgcaca agtagatata caaattgagc acacctctct      3120
     tcgcatggat ttcgatgttc tcgctacaaa agatatgtcc cagagcgtga taattggaag      3180
     caaattattg atgtacggtg atgttagcat cactgctgac ggagctaaat ttttagcaaa      3240
     agagcattat ttctccatga gtatttcgac agcaaaggct gataatgatt ttgataatga      3300
     aattcatgat tcttttattc cttcactgtg taggattatt gcggataatc ctaagacatg      3360
     gtacaagcaa gtcaaagaac tgaagtcatt tttgaacaat attcctgaaa aatatattac      3420
     ttccaaagag actaacgtta aaaataaaac taaattaaaa tcaaaagatg cttccgaagt      3480
     tcagcaaaat tccacattta gtaacaacag tgatgtaaga aatacaacaa atacgagaga      3540
     tagtaaacag aagattgtaa atcaaacaat tggaaaaaca attgaaaaag aaagagtgcc      3600
     ttatggaaaa agttttaatg aagtgttaaa tgacgttaaa cattacaacg ttattgaaaa      3660
     gaaaaagagt gtaggctttg aaaataaact agtaaggaaa aaccaaaatc aatttaagga      3720
     agatgagaca aataccgaaa gagtaggtat tggagattta gtagtaacta atcaaactca      3780
     gtttcgaaca catataataa taggtgataa aacagagtca ggctatgcaa gtgaaaacaa      3840
     aagcgatgct gttaagaaag tgagtaaata tgaagtaaat atcaaagaaa actgttcaat      3900
     tgaaaaacat aaaataatga tgaaataata ttgaataatg ttcgtgagag cgtcattcgg      3960
     gtcgaatgac ggtcaggatg gccgat                                           3986
//
ID   Gypsy-560_AA-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   08-MAY-2019 (Rel. 26.04, Created)
DT   08-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-560_;
KW   Gypsy-560_AA-I; Gypsy-560_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-264
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-264
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2129-2129 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 264 BP; 91 A; 50 C; 52 G; 71 T; 0 other;
     tgttaggatt ataagaagtt acccgtaata atttgagaac caatcacaaa caagctcatt        60
     tgccttctcc aatttctacc ttgcggctat aaaaagcgat tcaagacaat gagcaagtca       120
     gttcatatat tggagaaggc aaaggaacgg tcctgttgtt aacgagtgct tcaagtagcg       180
     aataaacggt tgaacgtatt agacagtgtc ttaaataagc gatccgaaag tcttcccaaa       240
     cttcgttgga aaagtattcc aaca                                              264
//
ID   Gypsy-56_AA-I repbase;    DNA;    INV; 4203 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   30-APR-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_AA_;
KW   Gypsy-56_AA-LTR; Gypsy-56_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4203
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
RN   [3]
RP   1-4203
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..4202
FT                 /product="Gypsy-56_AA-I_1p"
FT                 /translation="MQERSRKNFMESGSFASIGENTAETGVSTVAERNKMS
FT                 GNSLHVGGSLAAGIVVSSAMNAAAAAVQPSTGLASNCADNGGCNYVCEVDR
FT                 VVPVKVFGHFKPEEISSMLPSFSGDTGEDVSHFISVVENTKRALGVNEFIM
FT                 KLVVIQNLKGKAKLWLHSQADFMLKNYYEIIRSLREFYDNPVNTIEIRRLL
FT                 EKKTWSGKFETFMEYCQDKKVIAQKLKMQESEIVEYIVEGILNPVLKNQAR
FT                 MMNFKTVEEIVQAFRMIGNDSRLETXSRRPVKCYCCNQFGHIAAYCWKKRN
FT                 VVGPYRCETNACCQSISRNIAAAVKNDLVTSGDGRNGQIEFQXININNIFR
FT                 ALYDTGSPISLIRRGLVKKSEISKFNEKQMYRSISGNRLKILGVFQSEVII
FT                 QSIHFRIEFHVIADKHMGLYDAIIGRDVIMRPDIRTVIENGIQIFEVGKGY
FT                 LQIEDPSNTKVKQHKIFNIDSDTYQTLSSNIGEISDDRKAKFLECFKTKYY
FT                 FNNKPSKPVTEYEMTIALKKEEYFHFKPRRLSFDQKNKVEVKIKELLKDGI
FT                 IKESNSPYASPIVIIPKKGNDFRLCVDYRKLNKNTVRDNYPLPVIDDLIDT
FT                 LKNKEIFSIIDLKSGFHQIRIATESTKYTSFVTPNGQYEYLRVPFGLCNAP
FT                 AVFQRFINKIFKELIDDGKIIVYIDDILIASTSFDEHIDTLGKVFQILNDN
FT                 LLEINLSKCQFLFEEIDYLGYTINKFGKKLNKSHVDSISNFPVPKNNKDVQ
FT                 RFLGLTSYFRKFVQNFATIARPLYILLKKDAKFDFGKEQLDAFNSLKNKLI
FT                 SSPILATFDPQAETQLHCDASSFGFGAILLQKQKDNNFHPVSYFSRKTDEF
FT                 ESKLHSFELETLAVVYAIKRFHIYLAGTHFKIFTDCNALVQTLSKKNVNPK
FT                 ICRWALFLESYDFDLEYRDGSKMQHVDALSRQNTIVKKQFTEEELVNKKED
FT                 KLGKENYVNKTVNILNDCDIEQNIIVAQEQDVKLLNIKELLERSTFPDFEL
FT                 INGVLFRKEGQKRLLVVPKLMIDTVIKLCHDNCGHIGIEKTLYEIRKQFWF
FT                 SRMKKMVKNYINNCLTCIFYSPAGRKEGFVNIIDKGNKPFETVHLDYYGPI
FT                 QLSSSNRAKYILVIIDGFTKFTKFFPSKSTSSDETIRHLTNYMNFYSKPNR
FT                 IITDRGTCFTSQKFKDFTTINQIEHIKTAAYTPEANGQVERVNKTLTPMLA
FT                 KMCNETAKPWNELLSKLEFIFNNTFNRSIGNYPSVLLFGVQQNNLDCESHN
FT                 ISNFIANRQMSTSLTSLTDIRENAQRHNIRSQLCNKRNADKKRKKSTVYAE
FT                 GDFIVLKTGETHKLAPKYKGPYKIHKVLPNDRYVVTDLDGFQIANIPFNSV
FT                 CSPQNMRKWMSDYISDNSDIDEDIDSVRMPE"
XX
SQ   Sequence 4203 BP; 1550 A; 596 C; 788 G; 1267 T; 2 other;
     attcagaagt gggataagcc atgcaggaac ggagtcgaaa aaatttcatg gaatcaggaa        60
     gttttgcttc gatcggagaa aacactgcgg aaactggagt ctcaactgta gctgagagaa       120
     ataagatgtc gggaaattca cttcacgtag gcggatcact tgctgcaggt atcgtcgttt       180
     caagcgcaat gaatgctgct gctgccgctg ttcaaccatc aaccggatta gcgtcgaatt       240
     gcgcggataa cggaggttgt aactacgtct gtgaagttga tcgagttgtt ccagtgaaag       300
     tttttggcca tttcaaacca gaagaaatct cctcaatgtt gccatcgttt tctggagaca       360
     ctggagaaga tgtaagccat ttcatatccg ttgtagaaaa tacgaaacgt gcgttgggtg       420
     tgaatgagtt catcatgaag cttgtcgtta ttcaaaattt gaaagggaag gctaaactct       480
     ggttgcactc gcaggcggat tttatgctga aaaattacta cgaaatcata cgaagcttga       540
     gggagtttta cgataatcct gtgaacacaa ttgagattcg aagactgttg gaaaagaaga       600
     catggagtgg aaaatttgaa acgtttatgg aatactgtca agacaaaaaa gttatcgccc       660
     aaaaattgaa gatgcaagaa tctgaaatag tcgaatacat agttgaagga atattgaatc       720
     cagtactgaa aaatcaagca cgaatgatga atttcaaaac ggttgaagag attgttcaag       780
     cttttcgtat gataggaaat gactcaagat tggagacgkt ttcaaggagg cctgtgaaat       840
     gctattgctg taaccaattc ggacatattg ctgcctattg ctggaagaaa cgaaatgttg       900
     ttggaccata tcggtgtgag acgaacgctt gctgtcaatc aatatcaaga aacattgcgg       960
     ctgcagtaaa gaacgactta gtaacttcag gagatggacg taacggacag atagaatttc      1020
     agmttattaa tataaataac atttttagag ctttatacga tacaggaagt ccgatttcac      1080
     taatacgacg aggtttagtt aagaaatcag aaatatctaa atttaatgaa aaacaaatgt      1140
     atcggagtat tagtggaaac agacttaaga ttttaggagt ttttcaaagc gaagttatta      1200
     ttcaaagtat tcatttcagg attgaatttc acgttattgc tgacaagcac atgggactct      1260
     acgatgccat aattggaaga gatgtaatca tgcgtccaga tattcgaacg gtcatcgaaa      1320
     atggtattca gatttttgaa gtcgggaaag gatatttaca gattgaagat ccatctaaca      1380
     caaaggtaaa acaacacaaa atatttaata ttgattctga tacgtaccaa acactatcgt      1440
     cgaatattgg agaaatatca gatgatagaa aggcaaaatt tttagaatgt tttaaaacta      1500
     aatattattt taacaacaaa ccatccaaac cagtaacaga atatgaaatg actattgcat      1560
     tgaaaaagga ggaatatttt cattttaaac caagaagatt atcttttgac cagaaaaaca      1620
     aagttgaggt aaaaataaaa gagcttttga aagatggaat cattaaagaa agtaattcac      1680
     cctatgctag tccaatagta ataattccta aaaaaggtaa tgattttaga ttatgtgtag      1740
     attataggaa actaaataaa aacaccgtta gagataacta ccctttacct gttattgacg      1800
     atttaattga tacactgaaa aataaggaaa tattttcgat tattgatcta aaatctggtt      1860
     ttcatcagat tagaatagca acagagtcaa ctaagtacac ttcttttgta acgccaaatg      1920
     gacaatatga atatttgcgt gttcctttcg gattgtgtaa cgcccctgca gttttccaaa      1980
     gatttataaa caaaatattc aaagaattga ttgatgatgg taaaattata gtttatattg      2040
     acgatattct tattgcaagt acaagttttg atgaacacat agatacttta ggaaaagttt      2100
     ttcaaatatt aaatgataat ttattagaaa taaatttgag taaatgtcaa tttcttttcg      2160
     aagaaattga ttatttggga tacacaatta ataaatttgg aaagaaattg aataagtccc      2220
     atgttgatag tatatctaat ttcccagttc caaaaaataa taaagacgtt caaaggtttt      2280
     taggtcttac aagctatttc aggaagtttg tacaaaattt tgcaaccatc gcgagacctt      2340
     tgtatattct tttgaaaaaa gatgcaaaat tcgattttgg taaagaacaa ttagatgctt      2400
     ttaactcatt gaaaaataaa ttgatttcgt caccgatact tgctactttc gatccacagg      2460
     ctgaaacaca acttcattgt gatgcaagct cttttggatt tggagctatt ttgcttcaaa      2520
     aacaaaagga caacaacttt catcctgtta gttattttag tagaaaaaca gacgaatttg      2580
     agtcaaaatt gcacagcttt gaactcgaaa cattagccgt ggtttatgca ataaaaagat      2640
     ttcatattta tttagccggt acacatttta aaatttttac agattgcaat gcattagttc      2700
     agactttgtc aaaaaagaat gtaaatccga agatttgcag atgggcattg tttttagaga      2760
     gttatgattt tgatttagag tacagagatg gctcaaaaat gcaacatgtt gatgctttaa      2820
     gccgtcaaaa tactatagtt aaaaaacaat ttactgagga ggaattagtc aataaaaaag      2880
     aagataaatt aggcaaagaa aactatgtaa ataaaactgt taatatttta aatgattgtg      2940
     atattgaaca aaatattatt gtggcgcaag aacaagatgt taaactgttg aatattaaag      3000
     aattacttga gcgatctaca tttccagatt ttgagctaat caatggagtt ctttttagaa      3060
     aagaaggtca gaaacgttta ttagttgttc caaaattaat gattgatact gtcattaaac      3120
     tatgtcacga caattgtgga cacattggaa tagagaaaac tttatatgaa ataagaaagc      3180
     aattttggtt tagtagaatg aaaaaaatgg tgaaaaatta tataaacaat tgtctgacat      3240
     gtatttttta cagccctgct gggagaaaag aagggtttgt caatattatt gataaaggaa      3300
     ataaaccgtt cgaaactgtt catttagact actatggacc aatacaatta tcttcttcaa      3360
     atagagcaaa atatattttg gtaattatag atgggttcac aaagtttacg aaattttttc      3420
     catcaaaatc aacaagctca gatgaaacta ttcgccattt gacaaattac atgaactttt      3480
     acagtaaacc taacagaatt atcacagata gaggtacttg ttttacttca caaaaattca      3540
     aagattttac taccatcaat caaatcgaac acattaaaac tgctgcgtat actcctgaag      3600
     ctaacggtca agttgagcgt gtaaataaaa ctttaactcc tatgcttgca aaaatgtgca      3660
     atgaaacagc taaaccgtgg aatgaattgt tatcaaaatt ggaatttata tttaataata      3720
     cttttaatag gtcaataggt aattatccta gcgtgttatt atttggtgtg caacagaata      3780
     atttggactg tgaaagtcat aatatttcga attttattgc aaataggcag atgtcaacta      3840
     gtttaacgag tttgacagat atccgagaaa atgctcaaag acataatatt agaagtcaac      3900
     tttgtaacaa aagaaatgca gataagaaac gaaaaaagag cacagtatat gcagagggtg      3960
     atttcatagt tctgaaaact ggcgaaacac ataaattagc tcctaaatat aaaggtccgt      4020
     ataaaattca taaagttttg ccgaacgata ggtacgttgt aactgattta gatggatttc      4080
     aaattgcaaa tatcccattc aattcggttt gctctcctca aaatatgagg aaatggatga      4140
     gtgattacat atctgacaac agtgatatcg atgaggacat cgatagtgtc aggatgcccg      4200
     aga                                                                    4203
//
ID   Gypsy-56_AA-LTR repbase;    DNA;    INV; 107 BP.
XX
AC   AAGE02021956;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_AA_;
KW   Gypsy-56_AA-I; Gypsy-56_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-107
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02021956; Positions   95197   95091.
XX
SQ   Sequence 107 BP; 38 A; 14 C; 24 G; 31 T; 0 other;
     tgtagtaaga tcatagtagg cagacttagg gtaaaatata agattgacag ttagggatgt        60
     tcattctgta ataaaccact gaaagctgaa gacgttgttt cactaca                     107
//
ID   Gypsy-56_AnFu-I repbase;    DNA;    INV; 4095 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4095
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2940-2940 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..4069
FT                 /product="Gypsy-56_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAKQVIGTVQPYVFGEEIENYLERVDLFLEVNDVEDD
FT                 KKTGFLLTIGGAELFDVARKVCSPKNPKEIKYDVLTKTLTSHLKRSTNEVA
FT                 ERYKFRLVFQKELSINEYIIELKAAAQLCNFESFLEKALRDQLVAGVTDQE
FT                 LRKRLLSKSMLTYESACNVALSWEAAKRQNDEMNPNEAQKEIATVRTKATS
FT                 TPARSASEEQDECRQAEMAALRRTKWNNYSPAARGERNRVSRSTRSVLCYR
FT                 CGRXHDPNQCPVKAWNCYACGKTGHVASCCRSNRKGMRAFEEEQEEEGVEH
FT                 MGTVVALQNVNAIGMGNLPIKVSLFCRDVRLEFEIDCGACTSVIPEEIFRK
FT                 KFHKHVLEETYVTYVSATGQIIRPLGKFNVKVRTKDGKIGVLQITVIPAQR
FT                 KVNCLLGRDALDWMFPTWRRVFQINALESNQEYNILNEIRKQFPNTVNNSE
FT                 NSMITGFVANLILKPDATPIFHKAYTVPYSLIDEVENDLNQLVKDGILVPT
FT                 ETSQWASPAVIVKKKNGKVRVCLDGKVTVNRMLSTTHYPLPHVDDILSKIS
FT                 KWKYFCKLDLTAAYLQVPLSKASQEICTINTHKGLYRYTRMPFGISSAPAI
FT                 FQGIIDQILLGSPGMAYIDDILVGGATTKECKRNLFLVLDRLNKHRVKLNL
FT                 EKSEFFKSSIDYLGYNISASGIKPNLDKVKAIAEVASPRNVNELQAFLGLL
FT                 NFYRRFLPNLSAQLYPLHALLKKNTKFNWDNKCEEVFQETKQMLINHKVLE
FT                 PYDPSKPIVLAVDASPYGVGAVLSHVINKIEKPIAFASATLTEAQKNYAHV
FT                 HKEALAVMFGVNKFHKYIFGFKFKLVTDNSGVKEIFNPTRGTSSIAMARLQ
FT                 RWALTLSNYDYVIEQRPGTMMSNADAMSRLPLVEAPSVENIQLGIKAVQES
FT                 GLLNDVRIRYNQQEDPLIKTLYERVKGGWTHEPDYSLKPFFKLKTHFGLED
FT                 GILCFNDRIVVPESLKSLTLTNLHQNHEGIVKMKMNARQHVWWKTMDKDLT
FT                 EFVKSCKVCQLRQIVPKEVVVTKWPSVEGPFQRVHLDLFYIESRTLLIIVD
FT                 AFSKYIDVRLLNLSRASDIIENLENFFACFGLPQEIVTDNGPPFNSVAFEN
FT                 FLNVRGIKVSKSPPYHPQSNGLAERAVRTVKEVIKKFMIDEKVKHLSLTRK
FT                 INRFLTNYRNTPCTVTKVTPASRIFSYVPTTIMNSMKPKTGATPLKKSPMK
FT                 KQFSKPNVFNTSYMTKTVEFKEGEKALYRNHFKELFRWIPVTIYKKLSILR
FT                 YLVNINGNIRMVHINQLKKNSNYEPIILAQPQTTKYEEEKEISDKVKLEPK
FT                 PSRKRARSESSSPPIRRSERLKGQPRKKYPK"
XX
SQ   Sequence 4095 BP; 1500 A; 722 C; 869 G; 1003 T; 1 other;
     gattggcgac gaggataaag tcaaagagta caaaagtcaa atggcgaaac aagtgatcgg        60
     aacagtgcag ccgtatgtgt ttggagagga aatagaaaat tacctggaaa gagtggatct       120
     ttttctggaa gtgaacgacg ttgaagacga caagaaaacg gggttcttac taacgattgg       180
     tggcgccgaa ttgttcgatg tggcaaggaa agtgtgctcg ccaaaaaacc ctaaggagat       240
     aaagtacgat gtgcttacaa aaacattaac atcgcaccta aagcgcagca caaatgaagt       300
     ggcggaacgt tacaaattcc gcttggtgtt tcaaaaggag ctatcgataa acgaatacat       360
     tatcgaattg aaggcggccg cacagttgtg caattttgag tcattccttg aaaaggcgct       420
     acgtgaccaa ctagtagccg gggtcaccga ccaggagctg agaaagagac ttctctcaaa       480
     aagcatgctc acatacgaaa gtgcgtgcaa tgtggcattg tcctgggaag cagcaaagcg       540
     acagaatgat gagatgaacc caaatgaagc acaaaaagag atagcaacag tgcgaaccaa       600
     ggcgaccagc acaccagcta gatcagcgtc ggaagagcag gacgaatgta ggcaagcgga       660
     aatggcggcg ttacgacgta caaaatggaa taattattcg cctgccgcac gtggtgagcg       720
     aaatcgagta agcagaagta caagaagtgt attgtgttat cggtgcggta gacascatga       780
     tccaaatcag tgtccagtta aagcgtggaa ttgttatgcg tgtggtaaaa cgggacacgt       840
     cgcatcgtgc tgcaggagca atcgaaaagg catgagagcc ttcgaggagg aacaagagga       900
     agaaggcgta gaacatatgg gtacagtagt ggcattacaa aacgtaaatg caattggaat       960
     gggaaattta ccaattaaag tatccttatt ttgtagagat gtacgactag aatttgagat      1020
     tgattgtggg gcctgtacca gtgtgatacc agaagaaatt tttcgtaaaa aatttcacaa      1080
     gcacgtttta gaagaaacgt acgttacgta tgtatctgcg accggacaaa taatacgacc      1140
     actaggaaag tttaatgtaa aagtacgaac taaagacggg aaaataggcg tattgcaaat      1200
     tacagtaatt ccggcacaaa gaaaagtaaa ttgtttgtta ggaagagacg ccttggattg      1260
     gatgtttccc acctggcgaa gagtatttca aatcaatgcg ctagaatcaa atcaagagta      1320
     caatatacta aacgaaataa gaaaacaatt cccgaatact gtgaataata gtgaaaatag      1380
     tatgataacc ggttttgtag ccaatttgat tcttaaacca gatgcaacac caattttcca      1440
     taaggcttac accgtaccgt attccttaat cgatgaagtt gaaaatgatt taaatcagtt      1500
     agttaaagac ggaatattag ttcctaccga aacgtcacaa tgggcaagtc cagctgttat      1560
     agttaaaaag aaaaatggta aagttcgagt ttgcctcgat ggcaaggtta ccgtgaacag      1620
     aatgttatcc acaacacact accctttacc acatgtagat gacatactat ccaaaatttc      1680
     caagtggaaa tatttttgca aattagattt gactgccgcg tatttgcaag taccattatc      1740
     aaaagcctca caagaaatat gtacaatcaa tacccacaag ggattatatc gttatacacg      1800
     catgccattt ggcatcagtt cggcaccagc tatttttcaa ggaataatag atcaaattct      1860
     gttggggtca ccaggaatgg cctacataga cgacatacta gtaggaggag cgacgacaaa      1920
     agaatgtaaa cgcaatcttt ttctggtgct agataggcta aacaagcaca gagtaaagtt      1980
     gaatttagaa aaatcggaat tttttaaatc tagtattgat tacctcggat acaatatctc      2040
     ggcaagcggc ataaaaccaa atctagataa ggttaaggcg atagcggaag tggcaagccc      2100
     aagaaacgta aatgaactac aagcattttt gggattatta aatttctacc gtagattcct      2160
     acccaacttg tcagctcaac tttatccgtt acatgcgtta ctaaaaaaga atacaaaatt      2220
     taattgggat aataaatgtg aggaagtttt tcaagaaaca aaacaaatgt taataaatca      2280
     taaagtctta gaaccttatg accccagtaa accaatagtg ttagctgtgg acgctagtcc      2340
     atatggagtg ggagcggtgt tgtctcacgt cataaacaaa atagaaaagc ctatcgcatt      2400
     tgcctcagct acacttaccg aagcgcaaaa aaattatgct cacgtacata aggaagcgtt      2460
     agccgtaatg ttcggggtaa acaaatttca taaatatata tttgggttca agtttaagtt      2520
     agtaaccgat aatagcggag ttaaagaaat tttcaaccca accagaggaa cttcttcgat      2580
     cgcaatggct cgtttacaaa gatgggcctt gaccctttca aattacgatt atgttattga      2640
     acaaagacca ggtacaatga tgagcaacgc agatgctatg tcaaggcttc cgttagtgga      2700
     agcaccaagt gttgaaaata ttcagttagg aataaaggcg gttcaagaaa gtgggctatt      2760
     aaatgatgtt agaatacgtt acaatcagca ggaagaccct ttgattaaaa cattatatga      2820
     aagagtaaaa ggcggctgga cgcatgaacc ggactatagt ttaaaaccat tctttaaact      2880
     caaaacgcat tttggattag aagacggcat tttatgtttt aacgatagga tagtagtacc      2940
     ggaaagccta aaaagtctga cgctaacaaa cttacaccaa aatcatgagg gtatagtaaa      3000
     aatgaaaatg aacgcacggc agcacgtgtg gtggaaaacc atggacaagg atttaacaga      3060
     atttgtaaaa tcgtgcaaag tatgccagtt acgtcaaata gtgccaaaag aagtggtagt      3120
     aactaaatgg ccaagcgtag aagggccttt ccaaagggta catttggatc ttttttatat      3180
     agaaagccgt accttactca taatagtaga tgccttttca aaatatatag acgttagact      3240
     attaaatctt tcgcgggcgt ccgatatcat cgaaaaccta gaaaactttt ttgcatgttt      3300
     tggattgcct caggaaatcg tgaccgataa tggtccaccc tttaattcgg ttgcttttga      3360
     aaattttcta aacgtgagag gtataaaggt atcgaaatca cccccatacc acccacaatc      3420
     aaacgggtta gcggaaagag ctgttagaac agtaaaggaa gtcatcaaaa aatttatgat      3480
     tgatgagaaa gtaaaacatc tatccctaac taggaaaatc aatagatttt taacaaatta      3540
     taggaacaca ccgtgtactg taacaaaagt cacgccagcc tcacgaatat ttagttatgt      3600
     acccaccact ataatgaatt caatgaaacc taaaacggga gcgacacctc ttaaaaaatc      3660
     accaatgaaa aagcaattta gtaaacctaa cgtatttaat acgtcgtata tgacaaagac      3720
     ggtagaattt aaagaaggag aaaaagccct atatagaaat cattttaagg aattatttag      3780
     atggattccg gttactattt acaaaaaact tagtatttta cgatatttgg taaacattaa      3840
     tggaaatatt agaatggtac acatcaacca attgaaaaag aattctaatt acgaaccaat      3900
     aatcttggcc caaccgcaaa caacaaaata tgaagaagaa aaggaaatat cagataaagt      3960
     aaaactagaa ccaaaaccga gtagaaaacg agccagaagc gaatcttcct caccgcccat      4020
     tcgaagatct gagcgactaa agggacaacc taggaaaaaa tatcccaaat aagaacaata      4080
     gtttagcggg gagaa                                                       4095
//
ID   Gypsy-56_AnFu-LTR repbase;    DNA;    INV; 148 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-148
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2868-2868 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 148 BP; 52 A; 24 C; 31 G; 38 T; 3 other;
     tgtagagtta agaaattagt tcataagtat aaactaggtt aagattgtaa ttagtatgta        60
     agtattggtg acgcagcaca cgcatcatac ggtcacccgt aatgtgcgta mgkccagttg       120
     aataaatgcc ackaacgagt acacaaca                                          148
//
ID   Gypsy-56_CQ-I repbase;    DNA;    INV; 4397 BP.
XX
AC   AAWU01017208;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_CQ_;
KW   Gypsy-56_CQ-LTR; Gypsy-56_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4397
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 491-491 (2011).
XX
DR   GenBank; AAWU01017208; Positions   19858   24254.
XX
CC   Positions [3347-3811] - Integrase core
CC   'GGTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..4384
FT                 /product="Gypsy-56_CQ-I_1p"
FT                 /translation="MSTSPVPPPLSPHQQPQQGPHPPTTNAALLQILAQQQ
FT                 QLMTELAAQVKGMSRDEVVLDSLSSNIAEFAYDPEHGCTFDSWYARYADLF
FT                 DKDAGKLDDAAKIRLLMRKLNPAAHERFTSFILPKTPKDFKEFSVVVTKLK
FT                 TIFGTPVSVFNRRFHCLQITKDDAEDFVSYSCRVNRACVDFKISELSEEQF
FT                 KTLIFVCGLKSPRESDIRMRLITKLNERAEVTLEQVVEDCKNLVNLKKDTS
FT                 LVEKQGAPALVQEVRQSRFKAKQDKPDKQKQQHSSEAGPSSGQPSAPCWSC
FT                 GGMHYSADCKFRDHVCRDCKKKGHKEGYCACFARKGKKKPPSKGVKVVSVK
FT                 NVSQRRKFAEIEINQVPVQLQIDSASDITVISDRCWKQIGSPSGVKPSCSA
FT                 KTASGAPLDLALEFWCDVEISGITKRSLCRVVSPKIDLNILGADWISAFGL
FT                 WDVPFSSFCRKIAESAPDAVQALQAQFPKVFTSEMGLCTKTKVQLALKENS
FT                 KPVFRPKRPVAYAMQSAVQTELQRLQDLGVLVPVDHSNWAAPIVVVRKPNG
FT                 SVRICADFSTGLNSCLEPNQYPLPLPEDIFAKMAGCKLYSHIDLSDAYLQV
FT                 EVDPKDQHLLTINTHKGLYRYTRLTPGITSAPGSYQQLMDTMVGDLNGTCG
FT                 YLDDILVGGHTPEEHDRNLQQVLRRLEEYGLTVRIEKCSFRMPQVKYLGQI
FT                 LDGDGIRPDPDKTSAVATMPPPHDVSSLRSYLGAVNYYGKYIPEMRKLRYP
FT                 MDQLLKTGVKWEWSEACQRAFNRFRDILQSPLALTHYNPKLDIVVSADASQ
FT                 HGIGARIAHKLPDGTVKAISYASRSLTPAEANYSQIEKEGLGLIFAVTRFH
FT                 RMIFGRSFTLETDHKPLLAIFGSKKGIPVYTANRLQRWALTLLLYDFAIQY
FT                 IRTESFGYADVLSRLINTHIRPNEEYVIAAVELEDCMQDIVKQSLAHLPIT
FT                 FKMVQGGTKADPVLKQVIQFVQTGWPTNRTDLTDQHVQQFHQRRDSLSLVS
FT                 NCLMYGERTVIPAKFRDCVLHQLHKGHPGVERMRSVARNYVYWPGIDEHIT
FT                 QLVRSCNECAKAAKTNPKTSLESWPIPTQPWQRVHADFAGPVDGLYFLVVV
FT                 DAFSRWPEVVPTKRITTTATIAIFREIFSRHGMPETLVTDNGTQFTSEDFE
FT                 GYCNSNGILHLKTPPYHPQSNGLAERFVDTFKRTLKKITAGGEALRQAIDT
FT                 FLLCYRSTPCRSAPQSKTPAELLLGRRLRTSLDLLKPPTPFNKPADSEQEK
FT                 QFNRKHGAKARNYNVKDLVWAKVHRNNTWTWEPGQVLERVGAVVYNVWLPS
FT                 KQDLIRSHCNQLRKRHESEAVESTEEQQPAQIPLNILLDSWGLLQSAPAEP
FT                 AVQQPDPEPQPSSSGNELLPDQEPGVVPRRPRPQRRATPQQHQGPSRTSSR
FT                 IRRPPVRYDPYHCY"
XX
SQ   Sequence 4397 BP; 1048 A; 1302 C; 1226 G; 821 T; 0 other;
     aagtggcgac gagtatcgta gcagccggtc tcgcgtagaa gtcgatttcg caaagttttc        60
     gtcggaaatc cgtcgcgacc gaagttgagg ttagaacgcc atgtctactt caccggttcc       120
     accgccgctc tcgccgcatc agcaaccgca acaagggccg catccgccga caaccaacgc       180
     ggcgttgctc cagatcttgg cccagcagca gcagctgatg accgagctcg cggcgcaggt       240
     gaaggggatg tcgagggatg aagtcgtgct agactcactc tccagcaaca tcgccgagtt       300
     tgcgtacgat ccggaacatg gctgcacctt tgactcctgg tacgcgaggt atgcggatct       360
     gttcgacaaa gacgcgggca aattggacga cgcagcgaag atccggctac tcatgcggaa       420
     gttaaaccca gcggcccacg aacgattcac gagcttcatc ctccctaaaa cgcccaagga       480
     cttcaaggag ttctctgtgg tcgtgacgaa gctcaagacc atcttcggga cgccagtgtc       540
     cgtcttcaac cgcagattcc actgcctgca aataaccaag gacgacgccg aagattttgt       600
     gtcctactct tgtcgggtga accgggcatg cgtcgacttc aagatcagcg aactctccga       660
     agaacagttc aaaacgctaa tcttcgtgtg cggactgaag tctccccgtg aatccgacat       720
     ccgcatgcga ctgatcacca aactgaacga gcgagcggag gtcacgctgg agcaggtggt       780
     cgaggactgc aagaacctgg tcaacctcaa gaaggacacc agcctcgtgg agaagcaggg       840
     agcacctgcg ctcgtccagg aggtgcggca aagcagattc aaggcgaagc aggataagcc       900
     ggacaagcag aagcagcagc attcatccga agctggcccc agcagtggcc aacccagtgc       960
     tccgtgctgg tcgtgcgggg gcatgcatta ttcagctgac tgcaagttcc gggaccacgt      1020
     ttgccgcgac tgcaagaaga aggggcacaa agaagggtat tgcgcctgtt ttgcgaggaa      1080
     ggggaagaag aaacccccgt ccaagggcgt gaaggtggta tcagtcaaga acgtcagcca      1140
     gaggaggaag tttgccgaga tcgagatcaa ccaggtcccg gtgcagctgc agatcgactc      1200
     agcgtcggat ataaccgtca tttccgaccg gtgctggaag cagattggga gtccttccgg      1260
     tgtcaaacca tcgtgcagcg caaaaacggc ctctggggca ccccttgacc tcgcactgga      1320
     attctggtgc gacgtggaga tcagcggcat cacgaagcgc agcctgtgcc gcgtcgtgtc      1380
     tcccaaaatc gacttgaaca ttcttggcgc tgactggatt agtgcatttg ggctgtggga      1440
     cgttccattc agttcatttt gccgcaaaat cgccgagtca gcccccgatg ccgttcaagc      1500
     actgcaagca cagttcccca aagtcttcac cagcgagatg ggactgtgca ccaagacgaa      1560
     agttcagctc gcactcaagg agaactcgaa gcctgtgttc cgtcccaagc gtcccgtggc      1620
     gtatgcgatg cagagcgccg tgcagaccga acttcaacga ctgcaggatc tcggagttct      1680
     cgtgccggtg gatcactcca actgggcggc gccgatcgtc gtcgtacgga agccgaacgg      1740
     gtccgtgcgg atctgtgctg acttttccac cgggctgaac agctgcttgg aaccaaacca      1800
     gtacccgctc cctctgccgg aggacatctt tgcgaagatg gcgggttgca aactgtacag      1860
     ccacatcgac ctgtcggatg cctatctgca ggttgaagtc gatccgaagg accaacacct      1920
     gctgacaatc aacacacaca aagggttgta ccgctacacc cgcctcactc cgggcatcac      1980
     ctctgcaccg gggtcctacc aacagttgat ggacacaatg gttggcgatc tcaacggaac      2040
     ctgtggttac ttggacgaca tccttgtcgg tggccacaca ccagaagagc acgatcgcaa      2100
     ccttcagcag gtcctccgcc gtctcgaaga gtacggcctc accgtccgga tcgaaaagtg      2160
     cagtttccgg atgcctcagg tcaagtacct gggacagatc ctcgatggcg atggtatcag      2220
     gccggacccg gacaagactt cggccgtcgc aaccatgccg ccgcctcacg acgtctcatc      2280
     gttgcgctcg tacctcggcg ccgtaaacta ttatggcaag tacattccgg aaatgcgcaa      2340
     actccggtat ccgatggacc agctgctcaa gacgggcgtc aagtgggagt ggtccgaggc      2400
     gtgccagcgc gcgttcaacc gttttcgtga tattctgcag tccccgctag cgctcacaca      2460
     ctacaaccca aaactggaca ttgtagtctc ggcggacgcc tcacaacacg gaatcggcgc      2520
     gcgcatcgcc cacaagctgc cggacggcac cgtcaaggcg atctcgtacg cgtcgcgcag      2580
     tctcactccc gctgaagcaa actacagtca gattgagaaa gagggactcg gactcatctt      2640
     cgctgtcact cggttccacc ggatgatttt tggccggagt ttcacgctgg agacggacca      2700
     caaaccgttg ttggcgatct tcggaagcaa gaagggcatc ccggtgtaca cggcgaacag      2760
     gttgcagcgt tgggcactaa ctctgttgct ctacgacttt gcgatccagt acatccggac      2820
     ggagagcttc ggatacgcag atgtgctttc gcggctgata aacacacaca ttcggccgaa      2880
     cgaagagtat gtcatcgccg cggtcgaact cgaagactgc atgcaggaca tcgtgaagca      2940
     gtccctggcg catctgccga tcacgttcaa gatggtccaa ggcggaacga aagcagatcc      3000
     ggtgctcaag caggtgatcc agttcgtgca gacgggttgg ccaacaaaca ggaccgacct      3060
     caccgatcaa cacgtgcagc agttccacca gcgcagagac agtctatcgt tggtttccaa      3120
     ctgtctcatg tacggagagc gaacggtcat tccagccaag ttccgggact gtgtcctcca      3180
     tcagctgcac aagggtcatc caggagtgga acgaatgcgg tcggtggcac gtaactacgt      3240
     ctactggcct ggtatcgacg aacacatcac ccagcttgtt cgttcgtgca acgagtgcgc      3300
     caaggcagca aaaaccaacc ccaagaccag cctggagagc tggccgatac caacgcaacc      3360
     gtggcagcgg gtgcatgctg atttcgctgg ccctgtggac ggactctact ttctggtcgt      3420
     ggtcgacgcg ttcagcagat ggccggaggt ggtgcctacc aagcggatta ccaccacagc      3480
     cacgatcgcc atcttcaggg aaattttctc gcggcacggc atgccggaga cgctggtaac      3540
     cgacaacggc acgcagttta ccagcgagga cttcgaaggc tactgcaaca gcaatggcat      3600
     tctccacctg aagacaccgc cgtaccaccc gcagtccaac gggctcgccg agcgcttcgt      3660
     ggacacgttc aagcgcacac tgaagaaaat aaccgcgggg ggagaggccc tccgtcaagc      3720
     catcgacact tttctgttgt gctaccgatc cactccgtgt cgaagcgcgc cgcagagcaa      3780
     aacgccagca gaacttctgc tgggaagacg gcttcgcaca tcgctggacc tactgaagcc      3840
     accgacgccg ttcaacaaac ccgcagattc cgagcaggag aagcagttca accgcaagca      3900
     cggcgctaag gctcggaact acaacgtcaa agatctggtt tgggccaaag ttcatcgcaa      3960
     caacacttgg acttgggagc ctggccaggt gctggaacgg gtcggcgctg ttgtttacaa      4020
     cgtgtggctg ccgagcaaac aagatctgat ccggtctcac tgcaaccaac tgcggaagcg      4080
     ccacgagtcc gaagcggtcg agtcaactga agagcagcag ccagcacaaa tcccactcaa      4140
     cattcttctg gattcctggg gacttcttca atcggcgcca gctgagccag cagttcaaca      4200
     accggatcca gagccacaac catcgagttc ggggaacgag cttctcccgg atcaggaacc      4260
     aggggtggtt ccacgtcgcc ctcgccctca acgaagagct actcctcagc aacaccaagg      4320
     accatctcgc acgtcttctc gtatacgaag accgcctgtg aggtacgatc cgtaccattg      4380
     ctattaaaag ggggagg                                                     4397
//
ID   Gypsy-56_CQ-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   AAWU01017208;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_CQ_;
KW   Gypsy-56_CQ-I; Gypsy-56_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 492-492 (2011).
XX
DR   GenBank; AAWU01017208; Positions   19623   19857.
XX
SQ   Sequence 235 BP; 56 A; 53 C; 55 G; 71 T; 0 other;
     tgttggagga ccaccctgac gatgccacga atcgtctgcg atggctcact gcgtgacagc        60
     tgtcatgctc gtcgatgctg acgtggatcg agagagagga gcaagtcatc gtcgatcact       120
     tcctttgagg ccactgcccg aacaggccac gtttttctta acattttttg gaagcagttt       180
     taataaagtt ttaatagttt tgttgtgatt aattcacctc gtttatatca caaca            235
//
ID   Gypsy-56_DEl-I repbase;    DNA;    INV; 6382 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.06, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_DEl-LTR; Gypsy-56_DEl-I; errantivirus.
XX
NM   Gypsy-56_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6382
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3105-3105 (2021).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..1840
FT                 /product="Gypsy-56_DEl-I_1p"
FT                 /translation="MSWNYREIKVEYNSDDSWEGEVNCPVDTNPTDTAVTE
FT                 EMELAQVQALIEGAVRQALALQQDQFTAQINALATQVQSLQVETPQITTYE
FT                 KISVDPTIKCDIPLDIIKSVPEFTGVQDDYVAWRQAAIYAYELFKSSPKST
FT                 AHYQAVAIIRNKIRGPAGALLVSHNTVLNFDAIIARLDCTYSDKTSLRLLR
FT                 QSLELVSQGEMSLMQYYDDVEKKLTLVTNKIVMSHDQEGADLLNREVRDDA
FT                 LHAFISGLKKSLRAVVFPAQPKDLPSALALAREAEASIERSMFANSYAKAL
FT                 QDRAQIAEGNKIRAQGKPTRFNRDEQNQEKNPHFVKRQNGGPQPQTPKDKQ
FT                 TETPQPMEVDPSSRYRQKTDYSKRQANESNAPKRKSSSDRSTGQRRQRINN
FT                 VVQTDSKEALAEYEKAAKEAVEELESENEFAPCDDSVNFLGNTPGFRTLNG
FT                 GWLGEL"
FT   CDS           5104..6381
FT                 /product="Gypsy-56_DEl-I_3p"
FT                 /note="env."
FT                 /translation="MIDETEKLSDSFPQSHMRKLLDVDTDHLRTLLSVLQV
FT                 HHRFARSLDFLGTALKVVAGTPDASDFLKVRVTEAQLVESNSKQILINSET
FT                 QKQINRLTDTINKIISSRKGDLVDTPHLFETLLARNRILNTEIQNLILTIT
FT                 LAKANIVNPTVLDHADLKSLIEQDTPIVSLLEASKIKVLQSENIIHILIAY
FT                 PKVEFKCQKVSVYPVSHQQTILRLDEDTLAECEKDTFAVTGCTVTTHNTFC
FT                 ERARRETCASSLHAGNTANCHTQPSHLNAIMPIDDGVVIINEATARVRTDD
FT                 GAEVTVSGTFLITFERSAVINGTEFINLRKSTSKQPGTVRSPLLNIIGHDP
FT                 ALSIPLLHRMNINNLQSILDFKEEVVAAGSPKYWFAVGAILNVGLIGSFIL
FT                 FMVIRRKRATLKIQKALDNFNMTEDDHHSEGG"
FT   CDS           1783..4872
FT                 /product="Gypsy-56_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="FFREHSRLPYIERRLAGRTLKMLIDTGAAKNYVKPLT
FT                 ELKTITPVAKSFSVNSIHGSTEIKRKCLMNIFKYTSPFFLLDTLNSFDAII
FT                 GFDLLTQAGVKLNLEKNTLEYQGISEKLQYYQCADVNFTDVNDIVVPPSVK
FT                 KEFRDMILRNKKAFSNADEALPFNTAVVATIRTVDNEPVYSRYPSLMGVSD
FT                 FINKEVKQLLDDGIIRPSRSPYNSPTWVVDKKGTDPYGNPKKRLVIDFRKL
FT                 NEKTIPDRYPMPSIPMILASLGKAKYFTTLDLKSGYHQIYLAEHDREKTSF
FT                 SVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIFSK
FT                 NETEHVQHINIVLKCLIDANMRVGPEKTQFFKESIEFLGFIVTKNGATSDP
FT                 KKVKAIQEFPEPKSVYSVRSFLGLAGYYRVFIKDFAAIARPISDILKGENG
FT                 SVSKHVSKKIPVEFNEAQRDAFHRLRNILASEDVMLMYPDFQKPFDLTTDA
FT                 SASGIGAVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNFL
FT                 YGSREINIFTDHQPLTFAVADKNTNSKIKRWKAYIDQHNAKMFYKPGKENL
FT                 VADALSRQNINALQDELRSDAATVHSELSLTYTVDSTDKPLNCFRNQIVLE
FT                 ESRFPLKRNLLLFRSKTRHLISYTDKNTILETLKEVVNSGVVNAILCDLPT
FT                 LASFQHDLILLFPATQFWHCKNLVQDVTDKNDQLEIITAEHNRAHRAAQEN
FT                 IKQVLRNYYFPNMGNLAKEVVANCRVCTKAKYDRHPKKQELGETPIPSYTG
FT                 EMLHIDIFATDKKQFLTCIDKFSKFAVVQPILSRTIVDITGPLLQIVNLFP
FT                 ATKSIYCDNEAAFNSETITSMLRNTYGICIVNAAPLHSTSNGQVERFHSTL
FT                 TEIARCLKLDKKISDTTELILKATIEYNKSLHSVTREKPIEVVHAAAGDRR
FT                 EIVKDRLTKAQQDNIKRCNASRQNRVFEVGEKVFQKNNRRLGNKLTPLCSE
FT                 QKVEADLGTSVLIKGRVVHKDNLK"
XX
SQ   Sequence 6382 BP; 2023 A; 1530 C; 1315 G; 1514 T; 0 other;
     ggcgcccaat caataaacaa gaacccattg acatgtaagt tcataagtga tttcggcttt        60
     gaagaaacta ttaacgaaca ccacgtaccg atacgtaaaa aaacaaaaac aagtaaagta       120
     aatattgctg catttctctg ccagcatttc atttttaacg ttacatactt ttgctaaaat       180
     ttgttgcata cttttgccaa cgttactttt cagtaaaaca ttgcatacct taaacaaaac       240
     tattgcacac cttccctaaa atcgttgcat acttttacca gcgctctttt aataaagcat       300
     tgcatatcct aaacaaataa ttattgcata ctttcgacag cattatattt tttactgcat       360
     acccttaaca aattttataa taaatattgc ataccccaag atactttatt ttctattatt       420
     gccaacagct ttacatgccg acctttcacg atcggcctaa gttttgaaaa gtgccaacca       480
     taagccaatg agttggaatt atagggaaat aaaagtagaa tataatagtg acgatagttg       540
     ggagggggaa gtcaattgcc cagtagatac taatccaaca gacaccgctg taaccgaaga       600
     aatggagcta gcccaggttc aggctctcat tgagggtgcc gtcaggcaag ctttagcgct       660
     acaacaagat caattcacag cacaaataaa cgctttggct acacaagtac agagtttgca       720
     ggtggaaacg ccgcaaatca caacttacga gaaaatatcc gtcgatccaa caatcaaatg       780
     cgatatcccc ttagacatta ttaaatccgt gccggagttc actggtgtgc aggacgatta       840
     tgtagcgtgg aggcaagcag ctatctacgc gtacgaacta tttaagagct ctccaaagag       900
     cactgcacac taccaagcgg tagcgattat taggaacaaa atcagaggcc cagccggagc       960
     cttactggtg tctcacaaca ctgtcctaaa tttcgatgca ataatagcta ggctagattg      1020
     cacatactcg gataaaacat ccttgcgttt gttgagacag agtttggagt tagtttcgca      1080
     gggcgagatg tccctcatgc aatactacga tgacgttgaa aagaaactca cgctcgttac      1140
     caataaaatc gtaatgtctc acgaccaaga aggcgctgat ttgctcaacc gggaggttag      1200
     agacgacgcc ttacacgcct tcatctccgg ccttaaaaag tcattgagag cggttgtgtt      1260
     ccctgcacaa ccaaaagatc taccatccgc gctggccctg gccagagaag cagaagctag      1320
     cattgagaga agcatgtttg ccaactctta cgctaaagcc ctacaggacc gagcgcaaat      1380
     tgctgagggt aacaaaatcc gtgcccaagg caaaccgacc agatttaaca gagatgagca      1440
     aaatcaggag aaaaatcccc attttgtgaa acgccaaaat ggcggtcccc agccccagac      1500
     ccctaaagac aagcaaaccg agactccaca acccatggag gttgaccctt cctccagata      1560
     cagacaaaaa accgactata gcaagcgtca ggctaatgaa tccaacgcac caaaacgcaa      1620
     gagctcgtca gaccgttcaa caggtcaaag acgccaacgc attaacaatg tcgtgcaaac      1680
     tgactccaaa gaagctttag cagagtacga gaaggcggcc aaagaggcag ttgaagagtt      1740
     agagagtgag aacgagttcg caccttgtga cgactcggtt aattttttag ggaacactcc      1800
     cggcttccgt acattgaacg gcggttggct gggagaactc tgaagatgtt gattgacact      1860
     ggcgcggcaa agaattatgt taagccctta acagagctaa agaccataac gccggtcgcc      1920
     aagtcattct cggtaaactc gatccacggg tctaccgaaa tcaagcgcaa atgcttgatg      1980
     aatattttca aatatacctc cccatttttt ctcctcgata ccctaaactc tttcgacgcc      2040
     atcataggct tcgacttgct aacacaagcc ggggtcaaat tgaacttgga aaaaaatact      2100
     ctggaatacc agggtatatc cgaaaaactc cagtactatc aatgtgctga cgtgaacttc      2160
     accgatgtca acgacatcgt agttccccct tccgtaaaga aagagttcag ggacatgata      2220
     ctcagaaaca aaaaagcttt ctcaaatgca gatgaagctc tcccttttaa tactgctgtg      2280
     gtcgctacaa tccgaacagt agacaatgag cccgtatatt caagataccc gagcctcatg      2340
     ggtgtttctg atttcataaa caaagaggtc aaacaactcc ttgacgacgg cataattagg      2400
     ccctccagat caccttacaa cagcccaact tgggtggtag ataaaaaagg cactgaccca      2460
     tacggtaacc caaaaaaaag gttggtaatc gacttcagga aattgaacga aaaaaccata      2520
     ccggaccgtt accccatgcc gagcatccct atgatcttag caagtctagg aaaggcaaaa      2580
     tacttcacta ccctcgactt aaagtctggg tatcaccaaa tctaccttgc ggagcatgac      2640
     cgcgaaaaga cttcgttttc ggtaagcagc ggcaagtatg agttctgtcg cctaccgttc      2700
     ggcctgcgca atgcaagcag catattccaa agagcaatag atgatatcct gagggagcac      2760
     ataggaaaga tttgctttgt ctatgttgat gacgtcataa ttttttctaa aaatgaaacg      2820
     gagcacgttc aacacattaa catcgtgtta aaatgtctaa tcgacgccaa catgcgtgta      2880
     ggccctgaaa agactcaatt cttcaaagaa agtattgaat tcctgggttt catcgtaacc      2940
     aaaaatggag caacatccga tcccaaaaaa gtcaaagcca ttcaggaatt ccctgaacca      3000
     aagagtgtct acagtgttag atccttcttg gggttagccg gctactatag ggtctttatt      3060
     aaagactttg ccgctatagc tcgtccaata tcggacatac ttaaagggga aaatggttcg      3120
     gttagcaagc acgtatcaaa gaaaatccct gttgaattta atgaagctca acgcgatgcg      3180
     ttccaccgtc tacgcaatat tttggcatca gaagatgtca tgttaatgta tccagacttt      3240
     cagaaaccgt tcgacttgac cacggatgct tcggccagtg gaattggggc ggttctctcc      3300
     caaggcaata ggccgataac aatgatttct cgcgctttaa aacaagccga acaaaactat      3360
     gccaccaacg aaagagaatt gctggccatt gtgtgggctt taggcagact gcagaacttt      3420
     ctgtacggct ctagggaaat taacattttc acagaccatc agccactcac gttcgctgtg      3480
     gcggacaaga acacaaattc caagattaaa agatggaaag cttacattga ccagcacaat      3540
     gccaaaatgt tttacaaacc aggcaaagag aacttggtgg cggatgccct ttcaagacaa      3600
     aacattaatg ctctacaaga tgagctacgt tcggacgctg caaccgttca cagcgaactc      3660
     tccctgacct acacggtcga ctcaacagac aagccattga attgcttcag gaatcagatt      3720
     gtcctggagg aatcgcgttt tccgctaaag cgaaacctgt tgctgtttcg cagcaaaacg      3780
     cgccacttga tcagttacac tgacaaaaac acaattcttg aaacgctcaa agaagttgtg      3840
     aattctggag tcgtaaatgc aatactttgc gatctcccca cgttggcaag tttccaacac      3900
     gacctgattt tacttttccc tgctacccag ttttggcatt gcaagaatct ggtgcaggat      3960
     gtaacggaca aaaacgacca gttagaaatc atcactgccg aacacaatcg agcgcacaga      4020
     gcagctcagg aaaatattaa acaggtactc cgtaactact actttcccaa tatgggcaac      4080
     ttagccaaag aagtggttgc gaactgcagg gtctgcacca aagccaagta cgataggcac      4140
     ccgaagaagc aagaacttgg ggaaacgcct ataccaagtt atactggtga aatgttgcac      4200
     attgacattt tcgcgacaga caagaaacaa ttcttgacct gcatagacaa attttccaaa      4260
     tttgcagtcg tccagccgat attgtccaga acaatagtcg atatcacagg ccctctacta      4320
     caaattgtta accttttccc cgcaaccaag tcaatttatt gcgataacga ggcagctttc      4380
     aattcagaga ccatcacctc gatgctccgg aacacctacg gcatttgcat tgtgaatgcg      4440
     gccccgcttc acagcacttc aaacggccag gtggaacgct ttcatagcac cctgaccgaa      4500
     attgcgagat gcctcaagtt agacaagaaa atcagcgaca ctacagagtt aatcttaaag      4560
     gctacgatag aatacaacaa aagtttgcat tcggtaaccc gcgagaaacc aattgaggtt      4620
     gttcacgcag cagccggtga tcgtcgcgaa atcgtcaaag acaggctaac taaggcacag      4680
     caagacaaca tcaaaagatg caatgcatcc aggcaaaacc gcgttttcga ggtcggagaa      4740
     aaggtgttcc agaagaacaa cagaaggtta gggaacaaat taactccctt atgctcagaa      4800
     caaaaggtcg aagcagacct gggaacgtct gtcctcatta aggggagggt ggtccataag      4860
     gacaacctga aataggcttc ccaccacaat tagctagtaa gtcaaattaa agtagaacaa      4920
     cgtcttattt tgtttatccg tttcaggttt gcactcactt tacttgtagt actagcagcg      4980
     gtaaatgctc ggatcaccga cttctcgcat gccaactaca ttccggtcct agacggagag      5040
     gtactggtgt tcgatcaacg tagctacttg aggcactcaa gtaacatttc tgaattcatt      5100
     agtatgatag atgagaccga aaaactgtcc gattcctttc cacagtcgca tatgcgcaaa      5160
     ttactagacg tagatacaga tcatcttaga acattattgt ccgttcttca agtgcaccac      5220
     agatttgcac gaagccttga tttcctaggc actgccttga aggttgttgc cggtacccct      5280
     gatgcttcag atttcctaaa ggtccgcgtt acagaggctc agttggtaga gtctaactcc      5340
     aaacagatcc taataaactc cgaaactcaa aaacaaatta acagattgac ggacactatc      5400
     aataaaatta tcagttcccg caaaggcgat ttggttgaca ctcctcactt atttgagaca      5460
     ctgttggcaa ggaatagaat acttaataca gaaattcaaa atttgatact cacaataacg      5520
     ctggcaaagg caaacatagt aaatcctaca gtccttgatc atgccgatct gaaatcactt      5580
     attgaacaag ataccccaat agttagctta ttagaagctt ctaagatcaa ggtccttcag      5640
     tccgagaata ttatccacat attaatagcc taccctaaag tcgaatttaa gtgccagaaa      5700
     gtctccgtct accccgtctc tcaccaacaa accatcctgc gactcgacga ggacacgttg      5760
     gcggagtgcg aaaaggatac ctttgcagta acaggatgca ctgtgactac gcataacacc      5820
     ttctgcgaac gagcacggcg cgaaacctgt gctagctccc ttcatgcggg aaacaccgcc      5880
     aactgccaca cgcaacccag ccacctgaat gcaataatgc ctatagatga tggcgtcgtg      5940
     ataatcaacg aagcgacagc gcgcgtccga actgacgatg gcgcggaagt aaccgtctca      6000
     ggaaccttcc tgataacttt cgaacggtct gcagttatca atggcacgga gttcataaac      6060
     ttgcgcaaat caacaagcaa gcagcctggc accgtgagat caccactcct aaacatcatc      6120
     ggacacgacc cggcattaag catacccctc ctgcatcgta tgaacatcaa taatttgcaa      6180
     tcaattctgg atttcaagga ggaggtagtt gcggccggct cacccaaata ttggttcgca      6240
     gttggtgcaa tcctaaacgt cggactaatt ggctcattca tcctttttat ggtaataagg      6300
     agaaagcgag caacattgaa gatacagaag gctttggaca actttaatat gaccgaggac      6360
     gatcatcatt ctgagggggg gt                                               6382
//
ID   Gypsy-56_DEl-LTR repbase;    DNA;    INV; 561 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.04, Created)
DT   23-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_DEl-LTR.
XX
NM   Gypsy-56_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-561
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 499-499 (2012).
XX
RN   [2]
RP   1-561
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 561 BP; 179 A; 131 C; 106 G; 145 T; 0 other;
     agttaagaac taagcacata agatacactc ttttctgtca tacattgtta ttcatacaca        60
     atcataaata atttggttgc cctcagcaac aaatactaca acacttaaca caaagcctta       120
     agcattctgt ttgccctcag caacaaagta atattattgt aagcaatgct gactcgctac       180
     caagagttct gcgcgcagcc actgtaaatg gacaccgtgt tgcttgcgca agaatgctga       240
     gtcggcacgc cgactcgagc gaatggcgtg atgcattgac ttcgcagggc taacttaagt       300
     ttgaatattt ctgtagcctt cagtctcaat ctagatcgca actccataag tcgataaatg       360
     attaaagctc cggcatcgcc gtgaaacgaa aatacaaaac attaaattgt gttatcattc       420
     atagttgacc acgtccaaga cgggcaactg ggaaggtttc ccgcaacgta atcatcagtg       480
     ttccagtaac caattattgg acacatcaac acctcatcga aggaaggaag tcatcacgtc       540
     cacggatcgg aagacttaat t                                                 561
//
ID   Gypsy-56_DWil-I repbase;    DNA;    INV; 5041 BP.
XX
AC   .
XX
DT   12-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_DWil_;
KW   Gypsy-56_DWil-LTR; Gypsy-56_DWil-I.
XX
NM   Gypsy-56_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5041
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1881-1881 (2012).
XX
RN   [3]
RP   1-5041
RA   Bao W.;
RT   "Sequence update.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..5040
FT                 /product="Gypsy-56_DWil-I_1p"
FT                 /translation="MPQKNYVSKKALQQKCRQAGLSTSGNREQLQRKLTAI
FT                 CSDDEYASAENQSMAKKINELEKTIRVLQERSFQPAMISSPIVLSDVNVQE
FT                 VSGERNVLVTNEQTNVTYSPNGNTATSQQYDNVATFQQLGNTATSQQYGNV
FT                 ATFQQLGNTATSQQYGNVATFQQLGNTATSQQYGNVATFQQLGNTATSQQY
FT                 DHVDTSQQLGYAATSQQHAYFATSQQPNYIVTSQHGYMVTPRQHVPFAPTH
FT                 QSGNIATIQHYNNVVTSQQDNYVPTSRNYVSKSRSNVNVGQYSESSQDFAT
FT                 QRQQRHEVNCEEKYNNFNHSFGNMNEIIALVPEFNPSSVKSLDSHQFVKRV
FT                 ETLKNAYNWDDRKVIFAVQQKMQGAARYWVDATDEIFQTWPEFVSKFLYDF
FT                 PCISNAADVHLKMLKTKRETTESPQDYFYKMLAIGKKGELADSAIVTHIIN
FT                 GINDYDLKRKISNHYTSCNELLRDIHAYAAHNEIKYNPHSFQNKREPNGNT
FT                 QKSSQSVIKRISKEKIEPSIKCFNCQKMGHYSSDCPIPQRKPRCTHCNRTN
FT                 HDSTNCPEKFKNVSKVNKIDSNINSDICKFISVNGNETNAFVDPGSTRTLI
FT                 RKSFAENVGVLQRCSITLNGFGGGKFFCNQKLNAKIVVDKIGHEVEILVVE
FT                 NDLISENVLLGKDILCRDGNKLIIHGNKCFIENIRQIETVRNLADTENEEL
FT                 EKALIDNAACFAQKTNELGKCSISKMEITLTSNVPCYTKPYRTPFALRPIV
FT                 TNIISELLENDIIRPSDSPYASGIVIVDKKNGEHRLCVDYRRLNSITVKIP
FT                 FPMPNMEEQFAQLAGNVYFTQLDLRMGYHQIEISESSKQYTAFVTADGHYE
FT                 YNRMPFGLINAPAVFQSVMNQIIKRMEPGEVLAYLDDVIIPSKTFESGMQR
FT                 IKKFFSILQDSGLTLRYDKCKFLQSEITFLGHIVNKDGIKPGECKVSAIKN
FT                 FKVPTNVREVRRFLGLTGFFRKFIENYSLISRPLTELLRKTEANTFSWGEA
FT                 QQHAFNELIEKLCSEPVLTLYDFSAKHEVHTDACALGLAGVLLELHNDKDW
FT                 RPVCYFSRHCTNAESKYHSYALETLAVVETLQRFRVYLLGKSFRLVTDCSA
FT                 IAKVKTNKELIPQVALWWIKIMDYDCEFIHRDGSKMAHVDALSRAPNLPPE
FT                 GSLDEFVRTIISEIDDWLLTMQLQDKILAEIIAVLKGKRHSDQLKQLRIDC
FT                 VIENHRLYRKTENTIAFVVPKAVRWRIVKSCHDDVGHFGLDKTIERIQKRF
FT                 WFPKMRKYVKDYISTCIQCCYYKSKGGKPEGRMHYNDVEPVPFRRLHADHL
FT                 GPFIRSKRGNTHILAISDSFSKFLIVKAVKSTKSLPVLSTLNEVSSYFGLP
FT                 NFIITDRKQNHIQHVKNAVRTPRANGQVERANQIILNYIRTMNENPKDWDL
FT                 TLHNLQWTVNSQKNSTTGFSPIDLVFNFNAIDVEQNNLTAAIHADLDKPYS
FT                 NETVTEFRSQAAANIASERAKWKKRFDAKHTYPFVYSTGDLVVVENEPAAT
FT                 GESRKLEPRYRGPYQVAKILGNDRYLIKDVPGIQVTGRKYCSVYSSDKMKP
FT                 WCSNIPELDVSDDEDTRIEGDPNAGLAE"
XX
SQ   Sequence 5041 BP; 1716 A; 1030 C; 998 G; 1297 T; 0 other;
     attttcagac gtgggatggt gtccaattta gaatttggat agtgtgcaat aaggaactga        60
     tatttctcat aagtagaagt gtgtgaagac aaaggtaacg cgcaattttc cgcggtagaa       120
     tagcgtggca tgagaaactc gcaaagtgta atagtgtgtg ttctgcgcat gaacgaactc       180
     gtggaaacga gaacgaaaga cgaataagca aaacgaaaaa tcaacgaaca tacaagtgtg       240
     aaagagacaa caataatgcc gcagaaaaac tacgtttcaa agaaagcttt gcagcaaaaa       300
     tgtagacaag ctggattgtc aacatcagga aatcgagaac aattacagag aaaactaacc       360
     gcgatctgta gtgacgacga atacgccagt gcggaaaatc aatcaatggc taaaaagata       420
     aacgaattag aaaaaacgat tagagtattg caggagcgtt cattccaacc tgcaatgatt       480
     tcgtcaccaa ttgtgcttag tgacgtaaac gtacaagaag tttctggaga aagaaacgtg       540
     cttgtgacaa acgaacaaac aaacgtaacg tattcgccaa acggtaacac tgctacgtct       600
     cagcagtatg ataatgttgc tacgtttcag caactcggta acactgctac gtctcagcag       660
     tacggtaatg ttgctacgtt tcagcaactc ggtaacactg ctacgtctca gcagtacggt       720
     aatgttgcta cgtttcagca actcggtaac actgctacgt ctcagcagta cggtaatgtt       780
     gctacgtttc agcaactcgg taacactgct acgtctcagc agtacgatca tgtcgatact       840
     tcgcaacaac tcggttatgc agctacgtct cagcagcacg cttactttgc tacgtctcag       900
     caacccaatt acattgttac atcgcaacac ggctatatgg ttacgcctcg ccaacacgta       960
     cccttcgctc cgactcatca aagtggtaac attgctacga ttcagcacta caataacgtt      1020
     gttacatcac agcaagataa ttatgttcca acgtcacgga attacgtaag caaaagtagg      1080
     tcaaatgtaa atgtaggtca gtattcggaa agttctcaag atttcgcaac ccaacgacaa      1140
     caacgacacg aagtcaactg cgaagaaaaa tataataatt ttaatcattc ttttggaaac      1200
     atgaacgaaa ttatagctct tgttcctgaa tttaatccat cgtccgtaaa atcattggat      1260
     tcgcatcagt ttgttaaacg tgtggaaact ctgaaaaacg catataactg ggacgacaga      1320
     aaggtaattt ttgcagttca acaaaagatg caaggtgcag ctcgttactg ggtggatgca      1380
     acggatgaaa tatttcaaac atggccagaa tttgtttcga aatttctata cgacttccca      1440
     tgtatcagca acgcagctga tgttcattta aaaatgctga aaaccaaacg ggaaacaacg      1500
     gaatcaccac aagattattt ttataaaatg ctagctattg gtaaaaaggg tgagttagct      1560
     gattcagcaa ttgtaacaca tattataaac ggcatcaacg attacgatct taagagaaag      1620
     atatctaacc attatacctc atgtaacgaa cttttacgag atatacatgc ctatgcggct      1680
     cataacgaaa tcaaatataa tccacatagc tttcaaaata aacgtgagcc caacggtaat      1740
     acgcagaagt caagtcaatc cgtaataaaa cggatatcca aagaaaagat agagccgtca      1800
     atcaaatgct ttaattgtca aaagatggga cattattcct cagattgtcc tattccacag      1860
     cgtaagcctc gatgtactca ttgtaatcgt actaatcacg actctaccaa ctgccctgaa      1920
     aaatttaaaa acgtttcgaa agtaaataaa attgactcaa acatcaactc agatatttgt      1980
     aaatttattt cagttaacgg aaacgaaaca aacgcattcg tcgatccagg tagtacacgt      2040
     actctgattc gaaaatcatt tgccgaaaac gtaggcgttt tgcaacgatg ttcaatcaca      2100
     ctgaacggat ttggaggagg aaaattcttc tgtaaccaaa aactaaatgc gaaaatcgtt      2160
     gtcgacaaga taggtcacga agtcgaaatc cttgtagtgg aaaatgactt aatatctgaa      2220
     aacgttttat tgggtaagga tattctttgt cgggatggca ataaactaat tattcacgga      2280
     aacaaatgtt ttatcgaaaa catacgccaa atagaaacag ttcgaaatct agcagatacc      2340
     gaaaacgaag aattggaaaa ggccttaata gataatgctg cttgtttcgc gcagaaaacc      2400
     aacgaattag gtaaatgctc aatatcgaaa atggaaatca ctttaacatc aaacgtccca      2460
     tgttatacga aaccataccg aacaccgttt gcgctcagac ctattgttac gaatatcata      2520
     tctgagctac tggaaaacga cataattcgt ccttcggatt cgccgtacgc ctcgggaatc      2580
     gtcatcgtag ataaaaagaa tggagaacat cgtctttgcg tcgactatcg tcgccttaac      2640
     agtattacgg tcaaaattcc atttcctatg ccaaacatgg aagagcaatt cgctcaacta      2700
     gctggaaacg tctattttac gcaacttgat ctacgtatgg gataccatca aatcgagata      2760
     agtgaatcgt ccaaacagta cacggcgttt gttacagctg acgggcatta cgaatacaac      2820
     agaatgcctt ttggactcat taacgctccg gcagtctttc agtcggtaat gaaccaaatc      2880
     ataaaacgta tggaaccagg tgaggtactc gcatatttag atgacgtaat aatcccaagt      2940
     aagaccttcg aatctggtat gcaacgaatt aaaaagtttt tctcaatctt acaagacagt      3000
     ggcttaaccc tacgatacga caaatgcaag tttctgcaat ccgaaattac gtttttgggc      3060
     cacatagtca ataaagatgg aataaaacct ggcgaatgta aagtaagcgc aattaaaaat      3120
     tttaaagtac ctacaaacgt aagagaagta agaagattcc ttggtctcac aggtttcttc      3180
     agaaaattta ttgaaaatta ttcattaata tcacgtcctt taacagaact gctacgcaaa      3240
     acggaggcga atacatttag ttggggagaa gcccagcaac atgcatttaa tgaattaatc      3300
     gaaaaactat gtagcgaacc tgttctcact ctatacgatt tttcggctaa acacgaagta      3360
     cacaccgatg cttgtgcttt aggcctagca ggagttttac tagagttaca taatgacaaa      3420
     gattggcgtc ccgtttgtta ttttagtcga cactgtacca acgctgagag taaataccac      3480
     agttacgcat tggaaacgct tgcagtagta gaaacactcc aaaggttcag agtctacctt      3540
     ttgggaaaat cattccgtct ggtgacggat tgctcagcta ttgccaaggt taaaacgaat      3600
     aaagaactca ttccacaggt ggcgctctgg tggattaaaa taatggatta cgactgtgaa      3660
     tttattcatc gagatggtag caaaatggct catgtagatg cgttgagccg tgctccaaat      3720
     ttacccccgg aaggatcact agatgaattt gttagaacca taatttcaga aatcgacgac      3780
     tggttgttaa caatgcaact acaggacaaa atacttgccg aaataatcgc agtactgaag      3840
     ggaaagcgtc acagtgatca actgaagcaa ctacgtattg attgtgtcat cgaaaatcat      3900
     cgcctttatc ggaaaacgga aaacactatc gcgtttgttg tgccaaaggc agttagatgg      3960
     cgtattgtta aaagttgcca tgatgatgtc ggacacttcg gtcttgataa aaccattgag      4020
     aggattcaaa aacgattttg gtttccaaag atgaggaaat acgtgaagga ctatatttcc      4080
     acatgcatcc aatgctgcta ctataagtct aaaggaggaa agcctgaagg tcgcatgcat      4140
     tacaacgatg ttgaaccggt tccttttcgt cgacttcacg cggatcattt gggtcctttt      4200
     attcgaagca aacgaggaaa cactcatata ctggctatat ctgattcatt cagtaaattt      4260
     ctaatcgtaa aagcagttaa aagtacaaaa tcattacctg ttctatcaac gctaaacgaa      4320
     gtttctagtt actttggctt gccaaatttt attataacag accgtaagca aaaccatatc      4380
     caacacgtca agaatgctgt acgaacaccc cgtgcaaatg gtcaagtgga acgcgctaat      4440
     caaataattc tcaactatat acgaacgatg aacgaaaatc caaaggattg ggatctgact      4500
     cttcataacc ttcaatggac cgtcaactcg cagaaaaaca gtaccactgg attcagtcca      4560
     attgatctcg tatttaattt caacgctatt gatgtcgagc agaacaacct tactgcagcg      4620
     atacacgcag atctggataa gccatattcc aacgaaaccg tcaccgaatt tcgaagtcaa      4680
     gccgcagcca atatcgcatc agaaagagct aaatggaaga aacgttttga cgccaaacac      4740
     acttacccct ttgtttattc cacaggtgat cttgtagtag tagaaaacga accagccgcg      4800
     acaggcgaat cgcgtaaact ggaaccacga taccgaggtc cttatcaagt ggccaaaatc      4860
     cttggaaacg atcgttattt aatcaaagat gtccccggca tacaggttac aggacgtaaa      4920
     tactgttctg tatattcctc ggataagatg aaaccctggt gttcaaatat tcccgaattg      4980
     gatgtatctg acgacgaaga tactcgaatc gagggcgatc cgaatgcagg attggccgag      5040
     c                                                                      5041
//
ID   Gypsy-56_DWil-LTR repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   12-SEP-2011 (Rel. 17.09, Created)
DT   01-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_DWil_;
KW   Gypsy-56_DWil-LTR; Gypsy-56_DWil-I.
XX
NM   Gypsy-56_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-393
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1882-1882 (2012).
XX
RN   [3]
RP   1-393
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 393 BP; 112 A; 93 C; 80 G; 108 T; 0 other;
     tgtcaccaga cagttcatta acatactgat tcagccctgg gcaagcgacg ttatgctcta        60
     cccctggtgt tatcgataag tatcaaagag ttggtaacaa aacgttgacg agaaagggtg       120
     cgaacgaaga agctcctacg atcggtggta acgaacggcc accacgaacg aatccaacgg       180
     catcgctttg caaacgtcat tttattgtta agtctcaatt agttaataaa cttatattaa       240
     ttatccacct aaacgtacga gtctggcatt tctattgttc ctataagtcg cactccccgc       300
     cgaagccttc ctgacagctt ctccatctac aatcttctac tgggtaatgt gatttgcaac       360
     cgacattctc agaagtgggt attaggtgtg aca                                    393
//
ID   Gypsy-56_LMi-I repbase;    DNA;    INV; 6264 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6264
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
SQ   Sequence 6264 BP; 1424 A; 1985 C; 1217 G; 1627 T; 11 other;
     gtggtgaccc ctagtgtcga acattatgtt tttccttcat ctgaagtgtt tctgtggttc        60
     cgcaccagtt ttttcgctga aatatgatgt gccaccattc gacagttacg atgactttgc       120
     cagtccaact gccgcctagt tttcacttcg gatctcatcc tgcctcacgt gtgcctaacc       180
     cacttggata aaagagtgct tcatcttcwt ctccgctgtt tccagtttcg catttttcaa       240
     tgccgcactc caacagtgag gttaggtatt ctcacaatga ctcggttttg ttacacccaa       300
     tgtgctttcc agccgtgttc tacccctaca gtgttaatag acatcaaaac agtttcctgt       360
     gtgctcccca attccctgct gccaatatga acaattcaat gttcgcaatt tgaataagag       420
     accttcaact gcccagtggt ggtcgcaaca aagtaattcc caacgaacct ttttccgggg       480
     atgtgatttg taaaacacaa tttcaggctc ttctattctt acattctgac agttttctct       540
     caagccacct tttccacatt acaattgtct tcaatgtaaa agtgttgctt tgagctatcc       600
     cagtgacttt acatgtaaca catgtcctgt gacaatgctc ttaaagcagc gtgccattac       660
     aatctgctgg tccgtgacca cagcagctgt ttatcacaca cacatagctg acacattcag       720
     acacttgtgt ctggtctcat tcgttcaacc acctgtttgc tcagcacact ccagtgcctc       780
     tgccgtgctk gacttctgtg ccatctcaat gcatcatgcc gacgcacaac cgtcgttttt       840
     tcagtcccac cggggacccc agccacgccg cgtggtttcc acgccctacc acaacaggca       900
     tacagtgatg ctgctatcac tgaaatacag gtccagacac cagatccacc gccttctccg       960
     ccacctggtt ggctacctaa actgccacca ttttctttcg atgcgccaac cacttggttt      1020
     gcactggtgg aacaaatctt cgatcactac tcgttggatg atgcggccag atacttgtgc      1080
     ctcatcaccc acctccatga acatgtcaac ctgatctgtg acttagtgac ctcgccgctg      1140
     actgctgacc gctacgtcat tgccaagcgc accatcctca agcatgtctc tcgtactcca      1200
     gatgaaacca tcagatacat ccttcatgag gaacaccttg gtgataagaa gcctttgcag      1260
     ctgtggcacc atcttcgact gcttgtgaat gagcatgaca tgcctgattc gactcttatg      1320
     gcggtttggt ccagcaagct cccccttgcc atccaaactg cactgacata caacattctt      1380
     cagttgccca gtgagcacat caggatcgag gacagggtct atgaggccca cctctgtgaa      1440
     gctcacctca aacaacacga gcctccgctg cacgtcacac ctcaccttcc aggtaccggt      1500
     tgaggacacc ctcacaacgt ggatgccgca cacaagacat ctggctctgt atgtcacccg      1560
     catgctgtcc aggctccagc tttgtcgcct ccttcttcac cagtgctgga gctgccatcc      1620
     aatacctgta cattcggatg atggcccccc accgctgatt tcgtttcccc caggagcaga      1680
     tcccacacta cccattctgc tacttccaca gtcagtttgg tgatgccgcc aggaagtgcc      1740
     acctctgtgt caccacccaa acactgatcg caggatggtc taggcgccgc ctcctgcacc      1800
     gacatgggca ggtgccctca cactcttcac tcggtttgcg actcctcacc catcggcggt      1860
     cgcttatatc ttcaagactc tgcctcaggt acacgttttc ttgtggacac tggtgcagat      1920
     gtgtcactcc tcccctcgtc catgtccaca ggccagctcc gcccacatcg cacactgctt      1980
     caagctgtca acgccactca gctgacatgc tcaggttcga cgaccttcac cattcaactg      2040
     tcgccgaact gcaagctcga gtggaatttc ctagtggcta acatccctka gcccattgtg      2100
     ggcatcgatt tcttgacaca ccacaaactc ctggacgtag tgcgccgctc agtgtatcat      2160
     caccccacag acatgatttc tcatgtgctc cgtcgagctt agacaccact gactccccat      2220
     gcatgtgcaa cttattcgtg agtgcatcga tacggcagat cagattcatc atttcatgtg      2280
     taagtggttc acagaacatg aacaagtgct tcacctatgg catgaaaggg atgagattgc      2340
     tcactgtctg gacaacatgg aatcacaact tgcctccgtg ctacatgcga tcaagacact      2400
     tcgcaaggat tctttggata attgcactca ggttagtact tgtgctccct ccgtgagtgt      2460
     tgtcagtgac atcgcgcccg cgcgcagttt gacagtgcat ttgacaactc tgtgttcccg      2520
     tgcactccat ggacatttgt aaacaaaact cgttgccatg ccaacgcctg tttggacaca      2580
     gcagcactcg gccctgcctc tcgcggctgc cccttgcact gctagcgctc taactccacc      2640
     cgtgcggcga tcttcttgtg ttttgcacac ccaccaccac cggtcagtcc cgtgtctgga      2700
     actttaactt ctccacctcg catgccacca ctccctcatg tcaccgtggc gaactacact      2760
     gacaagattt tctcgaccta tggtcgacag gctcacgctc ggccatcttc cgcacacgtg      2820
     ccagtgtcgc cctcacctga gccggtggcc cctggcgcta ctacctctgc gcctcggcaa      2880
     ccttcggctg ccccgaactc tgtcgagtct tctcaccgcg ctatgcaaca gctgtcactt      2940
     ccacctcggg tgccagctgt cacaacactg cctcgggaca cttctggcgc cacacccccc      3000
     tccgactcat gtgaccttgc cttgccttgc tccgctacga cacgccagca ttctgtatgt      3060
     aaacaaaccc acactcccgc gcacatgagc atctcaatcg tcactaacgg actgtacaca      3120
     agctttgcct tatagatggc tctccgatct ccagtaaacc gacgactttg cccggagaaa      3180
     ctcgccactg tgaaacaaca gattgcagaa cttttggagg ccagtgtaat tgaaccttcc      3240
     tccagtaact ggtcttcgcc catacattta gtcgacaaga aagatggcac ctggcgtatg      3300
     tgtggtgatt atcgtagact caacgccagg accatcatgg acaattaccc tgttcctaac      3360
     atagcagatt tcacgcatgc cttggcagac accaaaattt tctctgtctt ggactgcaaa      3420
     cgtgcttatc accagatcct gtggcccctg aggacattga aaaaactgct atcacgactc      3480
     ccattgggtt attccattac cattttatgc ccttcagact taaaaatgcg actcagacat      3540
     ggcaacactt cattaatgaa gttctcttcc acttaaagtt ttgtttgcat atttggaaac      3600
     atactttgtt tatgcctcag ttgaggagaa caaggaacat ataaaactat gttatacatt      3660
     ctcatcacgc cagcattgag ttgaatgaca agaaaagaca attacatcaa ccatccatgc      3720
     ttttcctcat ttaccgtatc tgcggagggc attgctctgc cacccgagaa agttcattcc      3780
     atcaaaactt ccctgccctc aactttcaag gaacttaggc gctttctagg cactattaac      3840
     tactatcggc accacttgmc ggcgcagctg aacttcaggc ccccctcaca gacctcttgc      3900
     tggcaaacaa acgtccgaca catgccccgt tccatggact cctgatatga cagacacttt      3960
     ctctgcacta aggacctttt ggctaaggct gtcacattgc ccatcctcac ccagatgcca      4020
     aactcttcat cacaactgac acggctattg tgcctcagcc agactgttaa tggcacttca      4080
     atttttctcc aaaatactga acaatgcaca aaagaaatac tcagcccttg attaagagct      4140
     actcgcagtg catgaagcca ttaagcactt ctgctctgtg atctatggac gaccccttct      4200
     atatcctcac caatcacaag cccctagckg ctgccattck caacctgccc attgatcctc      4260
     camcccacca gttctctatt ttgacatttc aagttcacca tggattgaga tacatcaagg      4320
     gcgcagacaa tgtcatggcc aaaattttta tcacgtgttg atgctatctc gtcgctattt      4380
     gacctctcca acctcgcagt tctgcaatct gccaatgatc aaatcatgca actatatctg      4440
     accatagttc ctctctmaag cccatatgca ccacttcccc ggagccgtag gcgaaatctg      4500
     gtgcgaaaat cagggtaggc ttcacccatt catcccacac actctccagt gggaggtctt      4560
     taacaaactc cacaacctgg cacatctggg tgtcaaagcc tccaccaggt tggttacaga      4620
     atgatttgtc tggcatgaca tgaaatgtga ctgccaagct tgggcacgct cgtgcatccc      4680
     ttgtcaaaaa agcaaaataa ccactcacac catgcccccc cccttggcac ttttccaata      4740
     ccagctggcc atttccagca tgtccacatt gacttggtgg gacccctccc tccttgacag      4800
     tttccattac atcctcttag ccattgacca catgactcga tgggtcaagg ctacctattt      4860
     gatgaacatt actgcagaaa ctgttgctca tgcttttgta cattcgtgga tatcacaatt      4920
     tggttgcccc actgtcatca ccactgacca gggccggcaa ttcgaatcat ccctttttaa      4980
     tggcacctgc gaattgtgtg gcattcgaca cattcacacc accacctacc acccccagag      5040
     caatggtctg gtggagcggt ggcactgaac actcaaggca gcccttcact gtcacgacac      5100
     cttgtggact gaggcattac cttttgtctt actcagactc tggtcgatct acaaggagga      5160
     cctgcgcggc acagtcgcgg agttcgtgta tgggcaacca ttagtattgc ctggggagtt      5220
     agtcaacccc acaccacgcc cacctgttgc ggagctgccc actctcctgg attgtgtgca      5280
     tctttactcc cctccatcat tmaccccacc ccctcccttg ggtccctcgt acattggagc      5340
     ctgtgagttt gtcatgctcg caaggcacgg tctggcctct gctacagcca ccatactctg      5400
     gcactttgtg ctccaatgtt ccaaaatacc ttcgacatcc tcgtcaaagg ctccccagtc      5460
     acagtctcca tcaaacaggt taaacctgct cacgtcaagc cagcaactga cccccctcct      5520
     gtcgaggatg ttgacaggtc actcattgcg catgatgcac ctgctaccaa cactctgtcg      5580
     agtgctgctc aacagccgag cactcctgcg tcttccttgc catgctcacc cagctctcag      5640
     ttgagcaata gacaccctga ctcctccgtc aagcagcaat tgctctctgt caagcatcct      5700
     tcctaacttt tcctctccgt tatcgagtct aacccctccc acccccgcct ccccattccg      5760
     aggtttcgct cgcaccctct ctcgtcttct cctgctctcg agtacgctgt tcccattccc      5820
     ccctctctct cagcasacat ctcagtcatt ctacgtgatc agtcactctt tatcctctgt      5880
     ctttccgtga gtgcttcgcc acctccttca cccatcaagt gtcagctgat taagtgctta      5940
     aacctccccg atcaggtcga cctggaaagt gtgcgtgtgt tcgtgctccc accagtgaag      6000
     tgcttstcta cgccccctga cctctgccga cacatgttca ttcccctcat caccagaccg      6060
     accggtgcac atccatgaca cctgcaagat tttggtggga ggaccgccca cattcaacgt      6120
     tgccctcgat tcccattctg gacaatgaca ttgaactcac agtgatgcac acgccacatg      6180
     ttacttcaga cgccaagttg cccccccccg gcccccctct caaacccact acgagtactc      6240
     catactgcgg agggggaggg ggcg                                             6264
//
ID   Gypsy-56_LMi-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-210
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
SQ   Sequence 210 BP; 58 A; 38 C; 39 G; 75 T; 0 other;
     tgtggtggca caactaaatc gactatatcg atacataata aactgcatat atatctctgt        60
     attcagcttc tttggagact tcctctccaa agttgctgcc attgcttaaa agttcagtct       120
     gttctttgta gttgtgttgt gaataatgaa gtgcagtctt catatgaatg tggtgtttat       180
     ttagggcata caaccctagt aaatcccata                                        210
//
ID   Gypsy-56_MSe-I repbase;    DNA;    INV; 5885 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5885
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 933-933 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. There are only 2 full-length
CC   copies of Gypsy-56_MSe in the genome.
XX
SQ   Sequence 5885 BP; 1889 A; 1038 C; 1292 G; 1656 T; 10 other;
     gctcagaagt gggattacag caaaaataca tcgtttttgc aacgcccacg aatcaaccca        60
     ccgtttgaag gtaaagatgc tttggtttta tattatttac tggatattaa ttttttttct       120
     gtgatatgat ataactgaca aaatatagta tcggcttagg ttataaatat gaattagatt       180
     taaatagtac cttttatgca tattatacaa aaataattta cttgtgtagg tagacggcgt       240
     gtccgtaaat atgttgtcct taaccaagtg aakaccacga agtttgttaa ccgaaacttg       300
     ggaattgtat aaattcatga cgttcaaaac gagatcattg ataggtatcg attaaatgtc       360
     gatatgacaa actagatatt gaactataac tcgaaagctt taattggaag tggcagtata       420
     ataaaaagcg aactaatgtg aatttataag ctaatcaaaa tcgtgtgtac gagttccaga       480
     tgaatgaagg tgagtttgag gaggctgagc aacggagacg tcatacccct tttagacgct       540
     ctgcacagtc agatgggcgg agcgtggaac accgtgggga caaccgtcgt agtcgaagtc       600
     atggtgaccg tcggcgaggt aatacttatt atcggcgaag tagaagtcga agtgtacccg       660
     acgatcgagg ggaaagcaga cgacgaagcc gcagccgcac taggcagagt ggtgatcgtc       720
     atagccaaaa cttgaatcgc aaagggtcaa gcaatgatga agacctgtac cagaggttac       780
     gtctgttaga agatgagctc tcgaaacgca ctgaaaacgt aggaacaagg aagcgatgac       840
     cagccttaga cgaccaacgg accaagcgcg ggaagtaacc actcctagga gcgactccaa       900
     aagccctgaa cgcaagaaat ccaggtattc tgatcgtgct gatttttgaa gagttgctta       960
     catttttaag ggcattgatc gtgtaccatc tttatcgtct tccttaaata atgtcattcc      1020
     agagttcgac ccgcttttaa aagagcaaac tattgacatt tggttaaaca aagtagacga      1080
     gtgtgcggaa atttatagtt ggaacgataa acaaacggtg cactatgctt tgcccaaatt      1140
     gaccggacat gctaaaacct ggtatcaggg cttaccttct attaagcatt cttggttaga      1200
     atggaagagg ttactacggg aatcctttcc ctcaacagaa aattatgcag aactattgac      1260
     agagatgctt aatagaagga cgcgccctgg tgagtcactt gaattatatt acttttckaa      1320
     aattaattta cttaatcgtt gtaaaatatt tgggaaacaa gcggtcgact gcattatatt      1380
     tgggatagag gataaaggta ttcgggtaag tgcgcaagct gggaaattcg ataaaccgga      1440
     ggagacgtta gagtttttta aaaccgttaa gaaccatcaa tcgcgcgaca ttcatgagta      1500
     taagaaagat atcccttgta aggatacccg gtctttaaac cataacccac agtcgactag      1560
     tgtatctcag aaagtcaatg gcatgatgag gcatcgatct aagggaaatg taacttgctt      1620
     taattgcaat gcttcgggtc atatgagctg gcagtgtcgt aaacctatta ataaatgtac      1680
     tgagtgtaac tttttgggac acaacgcaaa taattgtcca aaaaggattg gttctagtag      1740
     cactagtgga gatatccaaa gtaatagcgt tccaaataag tccaaaaatg tactagaagt      1800
     tttcattaac gatgatgaag atgataaata caaaattggg attaaagtaa atggtattca      1860
     tattccatgt cagatagatt taggaagtca ggctacgctg atccgtgaag gcgacgctca      1920
     caggttacag cttgtatggg aattagtaca ggggccaacg ttaagaggat taggtaatgt      1980
     tccctacgtt cctatcggta aggcccttgt atccattgaa gtacaaaacg tgaaagaaga      2040
     gcaagtagaa gtatttattg ttgacaattc gttaattaat acaccggttc tacttggaca      2100
     tagttttacg gaacgacccg ggttaagaat tattaaaact gcatccgaat tacttttcga      2160
     taaagtcgaa tcaactacag tagttaaatt agctctcgtc accaccgatg atattgaaat      2220
     tgagataggc caactgaaag caatgatagt tacctctgat ggaaactata cgggcagctt      2280
     ctatgttaac ggatcagtta ggggaaaatt agggagggag tattatttat tgccaggcga      2340
     gtatcacatg cacaatggtg taagtcgggt attagttcag aatatcgggt cccaaatgct      2400
     taatttcaaa caggggtcac ttatttccag agcaagagtc atgtcacaaa atagctctaa      2460
     agacattctg aatattagtc aagtaaccgg agagacctct caggctatag attttaatta      2520
     cgggaaacaa cttacgccta cggagacaca gcggtgtcgg gatttgttag caaaatacaa      2580
     gtcatgtttt agcactggtt tacatgattt aggttttacg tccattatcg agatggaaat      2640
     tcatctctta gattctaccc cagttgttta tagaccctac aggttgtctc atcctgaacg      2700
     tcaacatgtt cagcagatgg ttgatcaaat ggttcaatat ggtatagtgc gcgaatctag      2760
     ctcgccttac gcaagcccta tagtgcttgt gcaaaagaaa tctggcgaaa aacgtctatg      2820
     cgtggactat cgtgctttaa atagacgcac taaacgtgat cattacccgc ttccacgcat      2880
     agaagaatta cttgaccagc tcgcagggca ctcgttgttt accacactgg acttggcttc      2940
     tgggtatcat caaataccta tagcggaaac atccaaggag aagactgcgt ttgtcacgcc      3000
     tgatggacaa tacgagtaca atcgtatgcc ctttgggctg gcaaacgcgc cttcagtatt      3060
     tcaacgggtg atccacaaaa tcctcaacaa aaccaaagtt ccatatgtaa ttatttatat      3120
     ggacgatatt ttaatccctg caaagacctt cgatgaaggg ttagtgcgtc ttgaagaagt      3180
     cttgaaatta ttgcaagggg ctggtttgac tctgaggatg gaaaaatgta atttctttct      3240
     agaaaatata gtttttcttg gttttgaagt agacaaaacc ggtatacgtc ctggaaacca      3300
     gaaaattcaa gccgtgtcta tgttccctac tccgcaaaag tcaaaacgat gttaggagat      3360
     ttctcggttt agctgggttt ttccgaagat tcgtaagtgg tttcgctctg ttagccaaac      3420
     ccctaacaga acttcttaag aaagatgttt cttggcaatg gtcaaaatct caacaaaatt      3480
     cttttgatac acttaaaggg gtactcgtag aacgaccagt actggcgtta tacaacccta      3540
     acgcagaaac acaagtacac actgatgcaa gtaaatttgg attaggcggg attttattgc      3600
     aaagaactgg atcaaatccg tggaggccta tatcttacta tagtcgtcaa actagtcctg      3660
     atgaacagaa gcttcattcc ttcgagcttg agacgctcgc tgtagtttgc gcactgaata      3720
     agtttcgaac ttatctgtta ggcataagat ttaccatagt atctgattgc aatgcactcc      3780
     gatccacctt tactaaacga gacctgattc cccggatttc ccgatggtgg attcagttct      3840
     tagaatttga ttgcgatatt gagtatcgcc caggcgagaa aatggcacat gtagacgcat      3900
     tgagcagagg agctatattg gaagaacagc agccaactag cattttagat atactgtctg      3960
     taaaaattga ggactggatt acaaccgttc agtcggcaga tgatgaagta aggcgaatta      4020
     aggatattat acaagatcct gaaacgtcta aaattgctgc catacacaaa gaataccaag      4080
     tcaaaaatgg aagagtatat cgtgtgatgg agaatgagga aataagatgg gtagtgccaa      4140
     ggggtgttcg ctggcaggtc ctgaaagcca accacgacga tgtcggtcac tttggctttg      4200
     aaaagacctt acagcggatt aaatctttat tttggtttcc gaaaatgcgg aaattcatta      4260
     ggaagtatgt aatggcatgc ttagaatgtg cccatcacaa ggttccatcg ggagctaaag      4320
     aaggtgcatt acatccaatc cctaaggtag atgtcccaat gcatactctg catgctgatc      4380
     accttggtcc gtttccaaag agcaaacgtg gtaatacgta tatacttgtc atcatagatg      4440
     cttttacaaa gtatgtgtat ctctccccag tgcgtagcac aaaatctaaa gcaagcgtta      4500
     aaatttttaa gacgtatttt agtttatttg gtcctccaag acgcctcatt accgaccgag      4560
     ggactacttt caccagtaaa agatttaaga cgtttataca atcagttgga gctaaacaca      4620
     ttcttaatgc agttgcaact ccacgcgcta atggccaggt tgagcggtgt aaccgcacaa      4680
     ttctggcctc attaggtagt atgacccatg gtaaatctga tgatacctgg gatgcgtttt      4740
     tacctgatgt acaattaggt ataaataccg ccatacacga tactactaag agaacgccta      4800
     ctgaattatt gtttgggcgc aaggtagcga atccatttaa tggggtttta aataatattt      4860
     cagaagagat tgacgaactt tcaaaggaag agcatattga gagtatgcga gcggatgcac      4920
     gtaaaaaaag ctaaagaccg atttgataaa cgtcgtaaaa cagttacaga atataaggta      4980
     ggcgatttag ttagggtgat tagaaatata gtaggaggat caggaaaatc aaaaaaatta      5040
     gaatctaagt gccagggccc ttatcgtata aaaagtgtgc ttcctaacga tcgatacctc      5100
     atagtggata cgccacttac acgaaagggt agaccatatg aaaatattgt gtctgccgaa      5160
     aatatttatc catggatgaa ctttcgtgca ccttcttktt cctcaggtga tgaaagtgac      5220
     tctgattaaa tatattattt actswwattc ttatacatta tgtaatggta ttgaaaagag      5280
     aatcattgac agtgaaagwa tgtacctacg agatgtacgt gaatttaaac acattatctg      5340
     tagacttata ttaacgtact taacaatata tgaatgaaaa gcgaaataat ctacatagca      5400
     tagagctgaa ttagatttga gctcagcatg agtgttatgt gtgacaaatt gtatcaaatt      5460
     ggtaatacgt aaagagtagg tgattttata cataagttat atttaatatt gtgattatta      5520
     ttataatata aagcgatact gtctgtgtaa cacagagctc gtgcgaatgt gagccgagca      5580
     tgagtgttat gttggagaag ccttatcaag ttgatggtga aagaatagaa gtagctatcc      5640
     tcttgatggg ctatagtgac gttatagcat cagcattgat gacattaaag caagatggca      5700
     gtgaaagaat agaagtagct cctcttgcat agttataata acctaagaat gacgtgtatg      5760
     aatcaatgat aactgtaagg aattatttag taagtataag tcatttgtgt aatttaattt      5820
     tgaaattgaa twttttttgt tgtaattwka aacgagggga ctcgttattg tgacggatgg      5880
     ccgac                                                                  5885
//
ID   Gypsy-56_MSe-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-229
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 982-982 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 4-bp TSDs. There are only 2
CC   full-length copies of Gypsy-56_MSe in the genome.
XX
SQ   Sequence 229 BP; 63 A; 39 C; 46 G; 80 T; 1 other;
     tgttacgttc atttattaat gtcatatcac taatcaatag tttatcgttg atatgactct        60
     tctgtcgcag cactagttgt tcaatagttg tcgttgacgg tagtttctaa tacggtcggg       120
     cattcgaaca cgaactgtcg gcaaggaagm aaatagcgaa gtgtgctaga ataaaagtga       180
     tttcaatcaa ttgtgtttat tcctgcaaat tccttctgag cgttttaca                   229
//
ID   Gypsy-56_SiCu-I repbase;    DNA;    INV; 4234 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4234
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5076-5076 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..4089
FT                 /product="Gypsy-56_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPPKEEQKKERTASVKSETDTETGEKVDTDESTDTKP
FT                 DTSATTSTVPKKKTKKVKKIVMSTIGTLQPFNPDVDDVELWVESYQAYLAA
FT                 NSLSLSTDETRCRGILLSSLGLTTYGLLKNLLIPDDPATKSVKDLIVTLKN
FT                 HLKPQPKAMAERYRFTLRRQKPGETVTQFLAELRRLATHCKFTDLTDRLRD
FT                 QFVIGISSEHAQKQMFVKDEKLTLQDAVDIATATEAASQGTALVRGNDNST
FT                 KEXSDVHKTRSQQQQKGNFRKFQGKNQNSSSSGKPQQQXQKDKKPDVSKCP
FT                 NCGSTKHTTAKRCPHKXVVCYHCDKKGHFSRYCHSKKHTTAANVVNVDSIK
FT                 EVHVVTPPAAARKKKTLWVKLNVNGVPHTWEFDTGCEDSILGXEDWKRMGS
FT                 PPLAKSKRVFRTYTQDIFHPLGELEVNLDYNGQTVRHCLPVSDQSSLFAQS
FT                 IDQCHAVSSPPSKVTTASVDDLLREFEDVFHAPTATDRIRGFKARVVLKEE
FT                 AQPKFLKARTIPYATRDQVDLELKEMEANGVIERIETSEWASPLVVVPKPN
FT                 GRVRITGDFKNTVNAQLCVTQYPIAVPEDLFNAVSGGTSFSKLDGTNAYHQ
FT                 MELDESSKKFMVINTHRGLYKYHVLPQGIASSPAIFQEFMDKLLQGISMGG
FT                 AYIDDVICSGSSSEDHLKNVREILTRMRRCNYKLSKPKCEFLRPDITFLGH
FT                 KITATGIHTTEEKVNSIVKIPSPTDTTSLRSFMGFVTFYSKFVQDLGELCA
FT                 CLYKLLCQDTPWRWTKQCEKAFQEVKRRLTTAPVLAHFTPRTPIGIACDAG
FT                 PRGIGIVLFHRYDDGTERPIAYASKVLSPTESRYSQIEKEGLSIVHGCKKF
FT                 FKYLCCVNFILVTDHRPLLAIFGPKSHLPSFAATRLHHWAIFLSSFQYTVE
FT                 YRKSSSHGNADALSRLPIADDDTATEKEETQVSLVASEKIEAMPFSSKTVQ
FT                 KASSSDKTLSQVYQYVREGWPSHIQDPALQPYHKHQHELTEVLGVLMWGVR
FT                 VIIPPNLRPMVLSHLHECHTGMVRMKSLARQFVWWPNIDKDIEDTCRSCDY
FT                 CQETQPDPQSAPLHPWQFPQRCWQRLHMDLAGPLHKQMWLIIVDAYSKWPE
FT                 VYAMHQNTTTVAVLKKLTEAIARFGLPEQIVTDNGRQFTSADFDDFCKRNG
FT                 IKHVCVSAYHPRSNGEAERFVRTFKKGMKAPELTVDLRLQCLLMRYRSTPH
FT                 ATTGTSPXELLQGRKLRTALDLLKPDIKSQVEKSQAKXEEXYNSGTKMRVL
FT                 QVGDHVWVKTHSKNEAKWTRGTISKIVGPVSYIVDVNGRSMKRHIDQIRLD
FT                 QSTTAAPSQDHTQGDPDALDETASED"
XX
SQ   Sequence 4234 BP; 1214 A; 1066 C; 906 G; 1024 T; 24 other;
     attggcgacg agtgtgtacg ttctactgag ttgttcaagt tgcccccggc atcccgaaaa        60
     aaagtttaag tcttcatgcc tcctaaagag gaacagaaaa aggaaaggac agccagcgtg       120
     aaaagtgaaa ctgatacgga aactggtgaa aaagttgata ctgacgaatc tactgatacc       180
     aagccggaca ccagcgccac aacaagtacc gttccaaaga agaaaacgaa aaaagtcaag       240
     aaaatcgtca tgtcgaccat tggaactcta cagccattca atccagacgt ggatgacgtg       300
     gagttgtggg tggaatccta tcaggcatac ctggctgcaa acagtttaag tttgtccact       360
     gatgaaaccc gttgtcgtgg tatccttctt tcctcacttg gcttgaccac ttatggcctt       420
     ctcaagaatc tcctcatccc agatgatcca gcaacaaaaa gtgtcaaaga tctcattgtc       480
     actctgaaaa atcacctcaa accacagccc aaggctatgg cagaaaggta ccgttttact       540
     ctccgccgac agaagcccgg tgaaaccgtc acccagtttc ttgccgaatt gagaagacta       600
     gcaactcact gtaagtttac tgatctcacc gaccgtcttc gagatcagtt cgtcatcgga       660
     atttccagtg agcatgcaca gaaacaaatg tttgtgaaag acgagaagtt aactctacaa       720
     gacgctgtgg atattgctac tgccaccgaa gctgctagtc aaggcacagc cctcgttcgt       780
     ggaaatgata attccactaa agagcmatca gacgttcata agacaaggtc tcagcaacag       840
     caaaagggaa atttcagaaa atttcaaggt aaaaaccaga actcctcnag ctcnggwaag       900
     ccacagcaac aacancaaaa agataagaaa ccngatgtct cmaagtgccc caactgtgga       960
     tctaccaagc atacgacagc aaaamgatgt ccccacaagg angtcgtctg ctaccattgt      1020
     gacaagaaag ggcatttctc ccgttactgc cattccaaga aacacacaac tgctgcaaat      1080
     gttgtcaacg ttgatagcat aaaagaagtt catgtcgtca cgcccccggc tgccgcacgt      1140
     aagaagaaaa ctttgtgggt caaactcaac gtaaatggtg ttccacacac ttgggagttt      1200
     gataccggtt gtgaagacag cattcttgga maagaagact ggaagcggat gggctcccca      1260
     ccgttagcca aatcaaaacg tgtttttcgc acctacactc aagatatctt tcacccgttg      1320
     ggagaacttg aagtnaactt ggactacaat ggccaaaccg ttcgtcattg tctacctgta      1380
     agtgatcaat catcgttatt cgctcaatcg atcgatcaat gtcatgctgt mtccagccct      1440
     ccaagtaaag tgaccactgc gtcagtagat gacttactac gtgaatttga agacgttttt      1500
     cacgccccca ccgccactga cagaatccgg ggattcaaag ctcgtgtcgt gttaaaagag      1560
     gaagcacagc ccaagttcct aaaagctcgt actattccgt acgcaactcg tgaccaagtc      1620
     gacttggaac taaaagaaat ggaagctaat ggcgttatcg agcgcattga gacttctgaa      1680
     tgggcgtctc ctctcgtggt ggtaccaaag ccgaacggtc gcgttcgtat tactggtgac      1740
     ttcaagaaca cagtcaacgc tcaactgtgt gtcactcagt acccaatcgc ggtccctgaa      1800
     gacctcttta acgctgtgag tggaggaaca tcattttcga aactcgacgg cacgaacgca      1860
     taccatcaaa tggaactcga cgagtccagc aagaagttta tggtgatcaa cacccatcgt      1920
     gggctctata aatatcacgt gctgccccaa gggatagcat ccagtccggc catcttccag      1980
     gagtttatgg acaaactcct ccaggggatt tcaatgggtg gtgcctacat tgatgacgtc      2040
     atttgttccg gctcatcaag tgaagaccat ctgaaaaatg ttcgagaaat cctcaccaga      2100
     atgcgaagat gcaactacaa gttaagtaag ccgaaatgtg agttcctccg tcctgatatc      2160
     actttcctgg gtcataagat aaccgcaact ggtatccata ccacagaaga gaaagtcaac      2220
     agcattgtga aaatcccaag tcctaccgat accacttctc tacgctcttt catgggattt      2280
     gtcacgtttt actcgaaatt tgttcaagat cttggtgaac tttgtgcttg tttgtacaaa      2340
     ctactgtgtc aagatacccc atggcgttgg acaaagcagt gtgagaaagc atttcaagaa      2400
     gtcaagcgtc gtctgaccac tgctcctgta ctggctcact tcaccccacg tactccaatt      2460
     gggattgctt gtgacgctgg acctcgaggt attggaatag tcttattcca ccgctatgac      2520
     gatggtacag aacgccccat cgcatacgca tccaaggtct tatcaccaac cgaatctcgc      2580
     tactcccaaa ttgagaagga aggcctctca attgtccacg gttgcaagaa atttttcaag      2640
     tatttatgtt gcgtcaactt catacttgtc actgaccatc gaccgctgct tgccatcttt      2700
     ggtcccaagt ctcacttacc ttcgtttgct gcaaccagac ttcatcattg ggctatattt      2760
     ctaagctcat ttcaatacac tgtggagtac cgaaagtcta gttcccatgg caacgctgac      2820
     gctcttagcc gcttgcctat tgctgatgat gacaccgcaa ccgaaaagga agaaacacag      2880
     gtttccctag ttgcctcaga gaaaattgaa gctatgccct tcagttcaaa aaccgttcaa      2940
     aaagcatcct cctctgataa gaccttgtcc caggtctacc agtacgttcg agaaggatgg      3000
     ccatcgcaca ttcaagatcc agctctccag ccatatcata agcatcaaca tgaactgact      3060
     gaagtccttg gagtcttaat gtggggtgta cgtgtcatca ttcctccaaa cttgcgtccc      3120
     atggtcctgt cccacctcca tgagtgccat accggcatgg tgcggatgaa aagccttgcc      3180
     cgccaatttg tgtggtggcc taatatcgac aaggatattg aagatacttg tcgttcatgc      3240
     gactactgtc aggagacaca gcccgatcct caaagtgctc ctctccaccc gtggcagttc      3300
     ccgcagcgct gctggcaacg gctccacatg gacctcgctg gtccactaca taagcagatg      3360
     tggctcatca tcgtggatgc atattccaaa tggccggaag tttatgctat gcatcaaaat      3420
     actacaacag tagcagttct gaagaagtta accgaagcca tcgcaagatt cggtctccct      3480
     gaacaaatcg tcaccgacaa cggcagacag tttacctccg ctgactttga tgatttctgt      3540
     aagcgaaatg gcattaagca tgtatgcgtt tctgcctacc acccaaggtc caacggggag      3600
     gcagagaggt ttgttcgaac ctttaagaag gggatgaagg ctccagagct aacagtcgac      3660
     ctccgtctcc aatgtctact catgaggtac cggtccactc ctcatgccac wacgggcacc      3720
     agcccakctg aacttttgca aggaaggaag ttgagaacag cgctcgactt gctcaaacca      3780
     gatatcaagt cacaagttga gaagtcgcaa gccaaacamg aagaakcata caacagtgga      3840
     acgaaaatgc gtgtcctcca ggttggcgac catgtwtggg tmaagactca ttccaaaaat      3900
     gaagccaagt ggactcgtgg caccatctcc aagatagtcg gccctgtttc atacatcgtg      3960
     gatgtcaacg gtcggtccat gaaacgccat attgatcaga taaggcttga tcaaagtact      4020
     acagcagctc cttctcaaga tcacactcaa ggtgaccctg atgctcttga cgaaaccgcc      4080
     agtgaagatt agcagcagca gcscctctct cttcamcaaa wttctcaatt twatttttca      4140
     wtattcttca aatatatcta attgttcaat tagttgtctm gtattcatgt cttgttgatt      4200
     gtagtagtaa cttgaagaat aggaaggagg aaaa                                  4234
//
ID   Gypsy-56_SiCu-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-330
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5133-5133 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 330 BP; 90 A; 67 C; 46 G; 127 T; 0 other;
     tgtaggatat tatgctaata tgttatgttg ataaccagct tatcatcatc ctgtctcgat        60
     ttctgtctgt attccagacg actttatgct catgtctctt tggtttaatt aactcaagtc       120
     tatctatcaa tttaccttat caaatgtcca tgttcacaat ttatactaat gtatttcgtt       180
     gtggtctctt cagacctctg tcagctcttg ttcttgtaac aactcatggc aaagaatcca       240
     tgcatatttg tatagtaata aatgctgcta taatagagaa gcttcgtgtt ctcctcagca       300
     tcttattcct tcataagaaa atacactaca                                        330
//
ID   Gypsy-56_SpEx-I repbase;    DNA;    INV; 5716 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5716
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4123-4123 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..1803
FT                 /product="Gypsy-56_SpEx-I_1p"
FT                 /translation="MSYTIKFLSLQKSELEYEVAVRGGVAADSVSELRRQI
FT                 VKLSSALPSEDILESHLEPLEDLKAVRESLMKSHNNIISLKAKLDKNLFIR
FT                 TETLLHHIYHRLNRINYSSADVADAYKNCRSHFNSQYKELTSFKIQSSQVP
FT                 QVTDGSPDPIREPVNVSVSCERKLVSEIGKLKYSGKTCVRSFIQRVDEFIL
FT                 SRSISQEKILSFAYEIFTDDALHWYRCIKDKVKTWGDVVILLKQDFSQDDY
FT                 DYRLLSEIRARTQGELENITIYISIMRGMFSRLGKPLSEEDQLEILLHNIR
FT                 PCYASTLASSPDMSDIDKLQKVCRNYENIQSRLKQFREPPKVNADTLAPEF
FT                 AYTKQASNNNTYKNNYTYNYNNNNFKQNKQSQNNNFKSHYSKNYPNNNYNF
FT                 DKHKTSYEPSRPANSNLHVNAVAQTSNHDTRHVYCPRCRSTSHSLGTCRQP
FT                 HFPICFKCGKKEVKFPDCPNCNSKTTKN"
FT   CDS           1791..5024
FT                 /product="Gypsy-56_SpEx-I_2p"
FT                 /translation="DYKKLGDEDCGDSNTYFNKTEWNNWLQTVTKFFNFYS
FT                 VSSIRNTDNDFSRPYVSVSINDKNLIGLLDTGSSVTIMGNNYHKKFIDSIR
FT                 EWNIRQPLTFVAAGGQKLESIGSILLPFTFNNQTYNLNVYIVPEIKNHLIL
FT                 GMDFWRKFGLFPHNLNSILFLNQSDAQLAELNSDSGHLRSYDHLSEVQRIT
FT                 ADNIISQFKEISYEKRGLGRTSLITHSIDTGDAAPIRQRYYRMSPEKQRIL
FT                 AEQLDEMLRDDVVEPAESPWSSPVLLTPKKNGELRFCLDSRKLNAITKKDA
FT                 YNLPYISEILDNLRDAKYLTSLDLSKSFWQIPINEKDRCKTAFYIPTRGTY
FT                 QFKCMPFGLTNAPATQQRLVDILFYGPEFEHKVFVFVDDIVIVSSSFEQHI
FT                 SLLLLVLNKLKSANLTINLKKSQFFREKLKYLGYIVDANGLHADPEKVDAI
FT                 KNYPTPTNRKEVRRFLGVASWYRRFIPNFSSLASPLNKLTSQSKKAPPFVW
FT                 SGDADMAFKKLKECLVSAPVLSCPDYSKPFEIHTDASNFGIGAVLIQTINN
FT                 EERVIAYMSKSLSNQERNYSATEREALAVLVAVEHWRCYVENGQRFIVYTD
FT                 HAALKWFLKLNNPTGRLARWGVRLSAYNFEIRHRRGSDNVVPDFLSRLIPL
FT                 SSIDNVPNSSSSTTSEFKTSDPWYLNIYNGCKESPTSFLEYQIRNGKLYRF
FT                 KKSLNPLNKEFEWKEVIPFENRIEIITKNHSEPIAGHLGIFKTFKRLALKY
FT                 YWPGMYADVVQVVSSCDTCIAHKHQNHTTLGHMGRPKTCCRPFQMLSIDLV
FT                 GPLPPTRKQNSYIFVVTCCFSKYCLLFPIRRATADVITKILEENVFLVHGI
FT                 PSTIILDNGKQFVSATLRNLISKYKIPNLHYTPKYSPHINTVERYNKTIMT
FT                 AVSTFITNDQRVWDLVIPKIQFAINNSVNEVTGFTPSFIVYGRELVSCGTH
FT                 YINAEFDDNIIFEPRDSYVENLGYLSTVFNKVQAALLQAHSRNSQSYNLRR
FT                 RAAEFNIGDIVWKRTFYQSDKDKYFNKKLAPKFIKCQVIGKKSPLVYELAD
FT                 MSGKSIGDWHIKDLKLINYKE"
XX
SQ   Sequence 5716 BP; 1864 A; 1102 C; 966 G; 1784 T; 0 other;
     gtggcgccca ataaaggtag aatatcgagc cgtgtttagt tcttgtttgc taagcatttt        60
     gtagttttct tggtgttggt tttctgtcag tagtgttaga tttaatcaca gcctaccaaa       120
     tgtgaatcta ccctcatata atttttttct ctaataatta attcaatcta cccacaattt       180
     ttacttgatc taccgtcaat atttttccac ccccaatttt tatttttaca tttacctaca       240
     aaatttacat tctttaaatt attttttttt cacatatggt aagactgacc acaaacgtgc       300
     tgattttgca ttttattgtt tttgctttat tgtttttgtc cttattttgc aacacactcc       360
     taactgcggt tttattcttc aatcatgtcg tacactatta aattcttatc actacaaaaa       420
     tctgaattag agtatgaggt cgctgtgcgt ggaggggtag ctgctgattc agttagtgaa       480
     ctcaggaggc aaatagtaaa attatcttcc gccttgcctt cagaagacat tctagaatct       540
     cacctagagc ctttggagga tctgaaagca gtgagggaat ctttaatgaa gtctcacaat       600
     aatataatct ctcttaaagc taaattggat aaaaaccttt ttatacgcac agagacttta       660
     cttcatcaca tctatcatcg cttgaataga ataaactact catcggctga cgttgctgat       720
     gcttataaaa attgccgttc acatttcaat tctcaatata aggaattgac gtcatttaag       780
     atacagtctt cacaagtacc tcaagtcacg gatggttcac cagaccctat tcgagaacct       840
     gtcaacgtgt cggtcagttg cgagcgcaag cttgtctcgg aaataggaaa actcaaatac       900
     tcgggaaaaa cttgcgtacg ttcgtttatc cagagggtag atgaatttat tctgagtagg       960
     agtatttctc aggaaaaaat actttctttc gcctacgaaa tttttaccga tgatgcccta      1020
     cattggtatc gctgtattaa agataaggtt aaaacctggg gtgatgttgt cattttactt      1080
     aagcaggatt ttagtcaaga tgattacgac tataggctat tatcggaaat ccgtgcgcgt      1140
     acgcaaggtg agcttgagaa catcactata tatatttcta taatgcgggg tatgttctca      1200
     cgtctgggta aacccttatc cgaagaggac caattagaaa tattgctgca taatattaga      1260
     ccctgttacg ctagcactct cgcatcttct cctgacatgt cagatattga taaattgcaa      1320
     aaagtgtgca ggaactatga aaatattcag tctagactta aacagtttcg ggagcccccc      1380
     aaagttaacg ctgatacgct agcaccggag ttcgcataca caaaacaagc aagtaacaac      1440
     aatacctata aaaataatta cacttataac tacaataata ataattttaa acaaaataaa      1500
     caatcacaaa ataataactt caaatctcac tattctaaaa actatcctaa taacaactat      1560
     aattttgata aacataagac ttcgtatgaa ccatctaggc ctgctaattc aaatctacat      1620
     gttaatgctg tagctcaaac gagcaaccac gataccagac atgtatattg tccaaggtgc      1680
     agatctacct cgcactcttt aggaacatgt agacaacctc actttccaat ttgttttaaa      1740
     tgcgggaaga aagaggtcaa atttccagac tgtcctaatt gtaactctaa gactacaaaa      1800
     aactaggtga tgaggattgc ggtgacagta acacatattt taataaaacc gagtggaaca      1860
     attggctaca aaccgtcaca aaatttttta acttttattc tgtctcttca atccgcaaca      1920
     ctgataatga tttctcacga ccttatgtct cggtttctat taatgataaa aacctaatcg      1980
     gccttctaga tacaggttcc agtgtcacta taatggggaa taattatcat aaaaagttta      2040
     ttgattcaat tcgtgaatgg aatattcgtc aacccttaac tttcgttgct gcgggtggac      2100
     aaaaacttga gtctataggc tctatattat taccctttac ttttaataat caaacatata      2160
     atttaaatgt ttacatcgta ccagaaataa aaaatcattt aattctgggt atggattttt      2220
     ggcgtaaatt cggtttattt ccccataacc ttaattctat cttattttta aatcaatctg      2280
     atgctcagtt agcggaactg aactcagact ctggacatct acgatcatat gatcacttgt      2340
     ctgaagttca gagaataact gcagataata taatatcaca atttaaagaa atttcttacg      2400
     aaaaacgagg tctaggtcgt acttcactaa taacgcattc tattgacact ggggatgctg      2460
     cccctattcg tcaaaggtac tacagaatgt caccagagaa gcaacgcata ctagccgagc      2520
     aattagatga aatgcttaga gacgatgtgg ttgagcctgc agaaagccca tggtcttctc      2580
     ctgtattatt aacgcccaaa aaaaatggcg aactaagatt ttgtcttgac agcaggaaat      2640
     taaatgctat cacgaaaaaa gatgcctata atttaccgta tatttccgaa atactggaca      2700
     acttacgtga tgccaagtac ctaactagtc tggacctttc caagagtttc tggcaaattc      2760
     ccataaatga aaaggataga tgcaaaacag ctttttacat ccctaccaga ggtacctatc      2820
     aatttaagtg tatgcctttt ggtctaacaa atgctccggc tactcaacag cgtctagtgg      2880
     acattttgtt ttacggacca gaatttgagc acaaggtttt tgtatttgtc gacgatattg      2940
     tcatagtttc atcttctttc gaacaacaca tttctcttct acttcttgtt ttaaataaat      3000
     taaaatccgc aaacttaact atcaacttaa agaaaagtca attttttaga gagaaactta      3060
     aatatttagg ctacattgtt gacgctaacg gcctacacgc tgaccctgag aaggtggatg      3120
     ctattaaaaa ctaccctaca cccactaata ggaaagaagt tcgtcgattt ctaggcgtag      3180
     cgtcctggta ccgtaggttt atacctaatt tcagttcttt ggcttcacca ttgaacaaac      3240
     taacctccca aagcaaaaaa gcacctccgt tcgtgtggtc aggtgatgcg gacatggcct      3300
     ttaaaaaact aaaggagtgc ttggtatctg caccagtact ctcatgcccg gattattcaa      3360
     aaccatttga aattcacacg gatgcgagta actttggaat tggcgctgtg ttgattcaaa      3420
     ctataaataa tgaagagagg gtcatagctt atatgagcaa gtcattgtcc aaccaagaac      3480
     gcaattatag cgctacagag cgtgaagctc ttgcagtttt agtagcggtt gaacattggc      3540
     gatgctacgt tgagaacggc caaaggttca tagtttacac tgaccacgct gcacttaaat      3600
     ggttccttaa attaaataac cctacaggtc gtttggctcg ctggggtgta cgcctatctg      3660
     cgtataactt tgaaataaga caccggcgag gttctgataa cgttgttccc gactttctat      3720
     cgcgtttaat tcccttatct tctattgata atgttccaaa ttcttcttcc tctacaactt      3780
     cagaatttaa aacatcggat ccctggtacc ttaacatata taacggatgt aaagaatcgc      3840
     caacatcttt cctagaatac caaatccgca acggtaaatt atacagattt aaaaaaagcc      3900
     ttaacccatt aaataaagaa tttgagtgga aggaagtaat tccgtttgaa aatagaatag      3960
     aaattataac taaaaatcat tcggaaccta ttgctggtca tctgggaatt tttaagacct      4020
     ttaaacgttt ggcgctgaaa tattactggc ccggtatgta tgccgatgtt gttcaagtgg      4080
     ttagctcttg cgacacttgt attgcacaca aacatcaaaa tcatacaaca cttggacata      4140
     tgggtagacc taaaacttgt tgtcgacctt tccagatgct aagtattgac cttgttggac      4200
     ccctaccgcc aactagaaaa caaaatagct atatctttgt agtgacctgc tgcttttcga      4260
     aatactgttt actttttcca attagacgag ctacagctga cgtaatcact aaaattttag      4320
     aagaaaacgt gtttttagtg cacggtatcc catccactat tatactagac aatggaaagc      4380
     aatttgttag tgctacacta aggaatttaa tcagcaagta taaaatacct aacctacatt      4440
     atacacctaa gtactcaccg catattaaca ctgtagaaag atacaataaa actataatga      4500
     cagcagtatc aacatttata actaatgatc agcgagtatg ggacctagtt ataccaaaaa      4560
     ttcaatttgc aatcaacaac tcagtaaatg aagtaactgg tttcacacct tctttcattg      4620
     tctacggtcg tgaactagtt agttgtggca ctcattacat taatgctgaa tttgatgata      4680
     atattatctt tgagcctcgt gattcatacg tagaaaactt aggttactta tctacagtat      4740
     tcaataaagt ccaagctgcg cttctacaag ctcattctag gaattcgcaa tcttataacc      4800
     tacgcagaag ggctgctgaa ttcaatatag gtgatattgt ctggaagaga accttctacc      4860
     aaagtgacaa agataaatat tttaacaaaa aattagcgcc taagttcata aaatgtcaag      4920
     taattgggaa aaaatcgcct ttagtgtatg aattagctga catgtctgga aagtctatag      4980
     gtgattggca tattaaagac ttaaaactaa ttaactacaa agagtaaatt cttagtttaa      5040
     cttaaattct ataacaatat cttatactaa aatatgtttc ttaaaataaa tactcacgtc      5100
     tacaactaat taaaaattaa atactcaact aaatttaaaa ttacccaacc atccttaaaa      5160
     ggtactgcca aaattactat catataacca gtttatttct ttatttattc tattactatc      5220
     attggtctac cccaatggca taagttatat atgtatgtat ttataggata atggctctac      5280
     cccattcacc ctatcttatc tacaggataa ctatcggtct accaccatag ttgttaaata      5340
     attatcatgg cctacaccat ggtaacctta agagcggttg caactctata aataagcctt      5400
     tgcaaaattt atctatttat tcaatctttc tggttatacg tagtaataac tgctctgtac      5460
     taatatttac agttatttac ttgttaatac cttcatctgg tttgcgtgag tgttttgtac      5520
     tacatacaga atactcggta tgataggatg cggaaacata taaactaaag tgtttactgc      5580
     tagtatgaat gaatgaaagt cgagggaaga atggcagaat ggatgcggga tgaatgtgca      5640
     acgtaaatca ggtgcctaca agagcagaag cagaggattt tccctaggaa aaatcctagg      5700
     ctaaaaaggg gggtac                                                      5716
//
ID   Gypsy-56_SpEx-LTR repbase;    DNA;    INV; 1219 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-1219
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4185-4185 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1219 BP; 301 A; 283 C; 234 G; 398 T; 3 other;
     tgtaacgttg tacgttattt ctttaaaata ktattaggtt tacgatatat gagccgcgcg        60
     ccgccgtggt cgtttgacgg aaaccggttt gttgaactat ccctaccacg acgcgacact       120
     gctacggacc gcggacaatc gtcatacgct cactacccag aagccacgag ccgatatagc       180
     acctgcctat attcgacaca agtccttatt aawatatatt caaaattata ttgcgctttt       240
     aaaaaaaata ccatttaaag tcagtgttaa ccccagatcg ggtgagtgtt gcaaaatatt       300
     gcttattatg tgtacctaga tatagttatg cgtaatgtga cgtagaatga cttgctttta       360
     tagtgggctc atacttttat tttattacct gcwacgatct cgctgttgtg ctgtctttgt       420
     gttgtattag ttaatcacct taacgctttt agaaacatat tatttggtat ttgactttat       480
     atgaccggtt caccttgacc gtgtcatgaa gatcgtaccc tacaattaat attttcctgt       540
     gtcctctttt cttagcaatt cttattgtgc ctacctattt attaattgtg ttaagttcac       600
     taaaactagt attttcaact catttcattg ctatcaactt tttcacttca ttcagattac       660
     atttattagc tgaattataa tttgtcacgc tgcctagact gcctcatctc gatggctatt       720
     ttgtgctaga tcactgcttt ccatttagtt aggtagttag taagtggaaa tcgggaggtt       780
     gcagtcgtgg ctggaataga accggaccgt gactaaaaca gaacgtaacg gacattctag       840
     ggttcgagta ctggagttca gagtacccgg atagtgcaac tatccgtagt gcacctacca       900
     acgtgcgcct gcctgcgtgc ctgtgcctac cagcgtgcct gtgcctacct gcgtgcctgt       960
     gactacctac gtgccgcatc taccttcgct tccggcgtct gctagcgcgc tgtacaccta      1020
     cccgcctgcc gctgccgagc tgcctgacta cccaggatag tggtgtttct atgggcgggc      1080
     aagagcctaa cgcgcgctcg atattttaaa ttcacaccca gctctgccga taccttttcc      1140
     ttaatatatt ataataattg aaccagtaat tatttttatt ttttttctac aactacctac      1200
     cactaacgca aacgttaca                                                   1219
//
ID   Gypsy-56_TrVa-I repbase;    DNA;    INV; 6965 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6965
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 301-301 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..2121
FT                 /product="Gypsy-56_TrVa-I_1p"
FT                 /translation="MSFVWPELLLPEQIRHELAIRGVTTGDHVVVQVRKLR
FT                 DMVDQGVFPLTSVLSSLNPQLELEEVQQQVHFLNEQPVGGGENNINALIAR
FT                 YEHCLRRVSYAQQQSNDDELAESFAQTIFEIEHRLKGLKSSNQSSLLSLLS
FT                 QGSTAMSSEPIPAAEVSNPQSLDVRSTSQDLLTGFSPSLFSTINPSNTNVC
FT                 VSSNSSQVDIMSRLSTIWSPVGAPPVSVCRSSASVLPSVNVSSSITAPMNI
FT                 SVPSASIGCSNVGQTSVGVNVYGSSRPISSWRQSTSAARPSGVNLQTFQSF
FT                 QRHVTFPQRNSSVVNPVSSLYTFSEAPASQTVTSSMPYGNQASYPAVSLGH
FT                 GFDFSHAAPPNSQVFFGEQSAAGGNFGSTRMSNVSRSSKFMSKFKLHTPVE
FT                 RLLKNLPECDGLDHTVLLSFLAQVILVREKSGWSDEDILDCLQHYTRSPLS
FT                 ELVLYSLDVGFTFDQFHKEALTRFLPKVIGNFLRYSTLNRPQGEDEPFTAY
FT                 VQDVRLQAQVLRVSMSEREIVELILSLANARTRALISFDNRPSTIVGLMRL
FT                 CITTQDYQFADSQRTRSGFRPSVPRPFSYSDINKIMPQELMLWNVRNR"
FT   CDS           2258..5482
FT                 /product="Gypsy-56_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KTSPKLSNPCSFWSGQHGANTIGACTCYKVQGMKTTP
FT                 LPYIPTIIGALSVSALLDSGSARSFVSGEMFARLKEARLIKEVRPVDWVCF
FT                 TATNEKMVISKEAVIHFKLSEIFSWTFSFLVSDELHSDMIFGVDFIRHSGL
FT                 IQDLQESRFWFKFKPSHVLKITGFQSVHRTLSDPSLQCCQADVKFESKDVD
FT                 LSHLNSTDRFRVNKILEKYPEVLTTSLGCTTALEYDIELTDSVPVRSHPYS
FT                 LAPPKMEFMRRKVDELLATGVVQNSKSAYASPAFPVPKGENDHRMVIDYRK
FT                 LNQKVKIESVPLPDINTAFTWFKKAKFFCVLDLNSAYHQIPLTHRSRHLTA
FT                 FCTPWGLFEYTRVPFGLTTGAPVLTRLGNVLFGDLRFRGLVNFLDDFVLYA
FT                 ETLDELLNLLDTVLARFKAAGITINPSKLQVAVNSIIYLGHIISARGIEID
FT                 PGRTSSIRNFPPPKDAKGIGRFIGMINFYNRFIPSFAERAAPLNALRRKGV
FT                 KFVWEDIHQKAFDDLKNCIISPPILCKPDFSKPFIVQTDGSSVALGAVLLQ
FT                 EIDGTRMPVAFASRTLCPPEKKYCAYEIECLAVLFALDKFRVYLEHQEFLL
FT                 ECDNQALTWLLAHPRQLGKIGRWVIRISSFKFKVQHIRGTLNIIADTLSRM
FT                 FPEPDCQAESSSAVNVVKVAFPQFPLAHVDISKHQKEDPKLNSIISALERG
FT                 EHRFPYSLQKGILCCRSGRLKLPKIVLPSSLIPLAFDYFHSSTVGAHLGIY
FT                 KTLNRMRDAFIYPNLCKDIHERVKACKICVMSKPAQNAQIGLMASTPPSYP
FT                 FERLSTDFVGPLVTSRQGNKFILVTVDGFSKFVWLSPVRAATSAVAIRELG
FT                 KIFQSFSFPKQLVTDNGKHFNSNLFQDFTFSLGVQHVKLSPYHPQGNLAER
FT                 VNRNLRSALIAYHAKDQPSWDQNLMWLQLSFNSAQHESLGRTPFDMLFTYR
FT                 PSHPLSLRWSFDEILPSSPLTVPEIWAAAKKQILQQHQRATKRYNKARSDC
FT                 KYRVGDLVLVKSFPLSNKAKRFMAKLAYRWHGPFRIQRFATPVSVGLEDPE
FT                 TGKFERLAHVSHLKRYPT"
XX
SQ   Sequence 6965 BP; 1607 A; 1317 C; 1612 G; 2426 T; 3 other;
     aaatggtagc ccgaacgtgg ttttggttct aaagaatttt aaaatgaaat tttaagtaac        60
     tgtttttctg tgataatttt ctgtgtctaa tcttgaaatg ttctgctctt gttttagtgg       120
     gcctcatgat cgccatccga ccatcttgtt tttcttgtgt attccagtgg tgtgtagttc       180
     cagtgttttg gtgtatttcc agttgaattg aattatttgc agaaatgata agtactagca       240
     ttaagtaaat tatttttttt ttatctgatt agkgtattat tcgggttgtc gattttggga       300
     tctatgttag kttaatttgt gtctgtgtta ggtgtaatgt cttttgtgtg gcctgaatta       360
     ttgttgccgg agcagattag gcatgagtta gctatccgtg gagtgacaac gggggatcat       420
     gttgttgtgc aagtacgtaa gttgagagat atggtggatc agggggtatt tcctctcact       480
     agtgtcttgt cctcattgaa tcctcaatta gaactagagg aggttcagca gcaggtacat       540
     tttcttaatg agcaacctgt aggaggtgga gaaaacaaca tcaatgcatt gatcgctcgw       600
     tatgaacatt gtttaaggcg agtaagttat gcgcaacaac aatctaatga tgatgaattg       660
     gctgagagtt tcgctcaaac tatttttgaa attgaacatc ggttgaaagg gttaaagagt       720
     agtaatcaga gttcgttgtt gtcattattg tctcagggca gcacggccat gtcatcggag       780
     ccgattcctg ctgcggaagt tagtaacccg caatctttgg atgttaggtc tacgagtcaa       840
     gatttattaa ctgggtttag cccttccttg ttttctacca ttaacccaag taacacaaat       900
     gtgtgtgtct cttctaattc atcgcaggtt gatattatgt ctagattatc gactatttgg       960
     tcacctgttg gtgctccccc ggtttcagtg tgtaggtcta gtgctagtgt tttgccgtca      1020
     gtgaatgtat cttcttcaat cactgcccct atgaacatca gtgtaccaag tgcttcaatt      1080
     ggttgtagta atgtgggtca aactagtgta ggtgttaatg tttacgggtc atcgagaccg      1140
     atttcatcct ggcgccagag tacttctgcg gctcggccca gtggagtgaa tttacagact      1200
     tttcaatctt ttcaaaggca tgttactttt ccgcaacgca attctagtgt agtgaatcct      1260
     gtttcttctt tgtatacttt ctctgaagca ccagcatctc aaacggtgac ttcttcgatg      1320
     ccttatggta atcaggctag ttatccggca gtgtcactcg gtcatggatt tgatttttcc      1380
     cacgcagcgc ctcctaatag tcaggttttc ttcggcgaac agagtgctgc agggggaaat      1440
     tttggatcca cccgaatgtc taatgtttcc cgtagttcta aattcatgag taaatttaaa      1500
     ttgcatactc cagtggagcg tttgcttaag aatctgccag aatgtgatgg tttagaccat      1560
     actgtattgt tatctttttt ggctcaggta atccttgtgc gtgagaaatc tggctggtca      1620
     gatgaggata ttcttgattg tttgcagcat tatacccggt cacctttgtc agaattggtt      1680
     ctttattctc ttgatgtagg tttcaccttc gatcagtttc acaaggaggc cctgactcgt      1740
     tttctgccta aagtcatagg gaattttctt cggtattcca ccttaaatcg tcctcaaggt      1800
     gaagatgaac catttacggc gtatgtgcaa gatgtgaggt tacaagcaca agttttgcga      1860
     gtatctatgt cagagaggga gattgtggag ttgatcttgt cgttagccaa tgcgagaact      1920
     agagccctga tttcttttga taatcgccca tcaactattg tgggattgat gaggctgtgt      1980
     atcacgacgc aagactatca atttgccgat tcccaacgca cgcggagtgg gtttcgtccc      2040
     tcggtgccgc ggcctttttc atatagtgat atcaataaaa tcatgcctca agagttaatg      2100
     ctgtggaatg tcaggaaccg ttaattgatg tgtctcgtcc accgcctgta ctaccatccc      2160
     ccaatgtttc tggtgcctta gggccgtctc agggacgtcc acccccaact tgtttctact      2220
     gtaaggaagt ggggcatatt gtgagaaatt gccttaaaag acctcaccca aactaagtaa      2280
     cccgtgctcg ttttggagtg ggcagcatgg ggcaaatact atcggtgcgt gcacctgcta      2340
     caaggtacag ggcatgaaaa ctactccgtt accatatatt cccacaatta ttggcgcttt      2400
     atcggtctca gctttgttgg actcgggtag tgctagatct tttgtctcgg gtgaaatgtt      2460
     cgctcgtctg aaggaagcta ggttgatcaa agaagttaga cctgtagatt gggtctgttt      2520
     tacagcaaca aatgagaaga tggtcatcag taaagaggca gtcatccatt ttaaattgag      2580
     tgagatcttt tcgtggactt ttagttttct tgtgtccgat gagcttcatt ctgacatgat      2640
     ttttggagtt gattttatcc ggcattctgg gctcattcaa gatcttcaag aatcccgttt      2700
     ttggtttaag tttaagcctt ctcatgtttt gaaaatcact ggcttccaga gtgtacatag      2760
     aactctttcc gatccttcct tgcaatgttg ccaggctgat gtaaaatttg agtcaaaaga      2820
     tgttgatctg tctcatctca attcaacgga tcgttttcgg gtgaataaga ttttagagaa      2880
     gtatcctgag gttttgacca cttctctggg ctgcactact gctctcgaat atgacattga      2940
     actaacggac tcggttccgg tgcgcagtca cccgtacagt ttagcccctc ccaaaatgga      3000
     attcatgaga agaaaagtgg atgagttatt agctactgga gtcgttcaga attctaagag      3060
     tgcatatgcg tcacctgcat ttcctgttcc gaaaggtgaa aacgaccatc ggatggtaat      3120
     tgattaccgg aagctgaacc aaaaggtgaa aatcgaatct gtacctttgc ccgatattaa      3180
     tactgccttc acatggttca aaaaggctaa gttcttttgt gtattagatc ttaattctgc      3240
     ttatcaccaa attcccctaa cacataggag tagacatctt acagcttttt gtaccccttg      3300
     ggggctattc gagtacactc gtgtcccttt tggactgacg actggtgcgc cggttctgac      3360
     tcgtttgggc aatgtcttat tcggcgattt gcggtttaga ggattggtca actttcttga      3420
     tgattttgtt ttgtatgcgg agactttgga cgaacttttg aatttgttag atactgtgtt      3480
     ggctcgtttc aaagcggccg gaattaccat taatccaagt aaactccagg tagccgttaa      3540
     ttcgatcatt tatttgggac atataatttc agcaagggga atcgaaattg acccaggtcg      3600
     tacttcttct attcgaaatt ttcctccacc caaagatgcc aaagggatag gtcgatttat      3660
     tgggatgatt aatttttata atcgcttcat tcccagtttt gcggagcgcg ctgcgccttt      3720
     gaacgcgttg cgacgcaagg gtgtgaagtt cgtttgggag gatattcatc agaaggcttt      3780
     cgatgatctt aagaattgta ttattagtcc accaatcttg tgtaaacctg atttttcaaa      3840
     acctttcatc gttcaaacgg atgggtcaag tgtcgctttg ggtgcggttc ttctgcagga      3900
     gatagatggt actcgaatgc ctgtagcttt tgcttcgaga accctgtgtc cgcctgagaa      3960
     gaagtactgt gcctacgaaa ttgagtgtct ggctgtcctg ttcgcgttgg acaaatttcg      4020
     ggtgtatctc gaacaccaag aattcctact cgaatgtgac aaccaggccc tcacttggtt      4080
     actggctcat cccaggcaac taggaaaaat aggtagatgg gtgattcgga tttcttcttt      4140
     taaatttaaa gtacagcaca ttcgtggcac tttgaatatc atcgcggata cgctttctcg      4200
     gatgtttcct gagccggact gccaggcgga gtccagttct gcagtgaatg tggtgaaggt      4260
     ggctttccct cagtttcctc tcgctcacgt ggatatctcg aaacatcaga aagaagaccc      4320
     taagttgaac agcattattt cagcgttgga aagaggtgaa catcgattcc cgtattcact      4380
     gcagaaaggg attttgtgct gcaggtctgg caggttaaaa ttacccaaaa ttgttttgcc      4440
     atcctcgtta attccgttag cattcgacta tttccattct tcaactgtgg gtgcccattt      4500
     gggaatctat aaaaccttaa atcgtatgcg tgatgctttt atttacccta acttatgtaa      4560
     ggatattcat gaaagggtta aggcttgtaa gatttgtgta atgtcgaaac ccgcgcagaa      4620
     tgcgcaaatt ggtttaatgg cgtctactcc cccttcttat ccttttgaaa gactatcaac      4680
     ggactttgtg ggccctttgg taacgagtcg ccaaggcaat aagttcattc tggtaacggt      4740
     agatggtttt tctaaatttg tatggctttc gccggttcga gcagctactt ctgctgtagc      4800
     aattcgtgaa ttaggaaaga ttttccaatc cttttctttc ccgaaacagt tggtgactga      4860
     taatgggaaa catttcaatt ctaatctttt tcaggatttc actttttcgc tgggtgtaca      4920
     acatgtcaag ctgtctccgt atcatcccca ggggaatctt gcggaaagag tgaatcgcaa      4980
     tttacgttcg gcattgattg cttatcatgc caaagatcaa ccaagttggg accagaattt      5040
     aatgtggctt caacttagtt ttaactctgc ccaacatgag agtctgggaa ggacaccgtt      5100
     tgacatgctg tttacctatc gtccaagtca tcctttgtcg ttgcggtggt cttttgatga      5160
     gattcttcct tcatcgcctt tgacggtgcc tgaaatatgg gccgctgcta agaagcaaat      5220
     tcttcaacag catcaacgtg ctactaagcg ctataataaa gctaggtctg attgtaaata      5280
     tagagtaggt gacttggtat tagtaaaatc ttttcctctc agcaacaaag ccaaaaggtt      5340
     tatggcaaag ttggcgtata gatggcatgg accttttagg atccaaagat ttgctacacc      5400
     tgtttccgtg ggtttggagg acccggaaac gggaaaattt gagagattag cgcatgtttc      5460
     tcatctgaaa cgatacccaa cttaatgttt ggggggtttc actcattatt gtattgtgtt      5520
     tctgtgaggt atccaaagta gtgttggtag aattttgctg ttgtgtgggt ttttttcttt      5580
     gttgaaaact tctgtctctc ttgggacaac ttttgtttat cgtttttatt gtatatgtgt      5640
     tggatatttc agaaattgtg tttggtttac tggatgtttc aaattgtgcc catcttatat      5700
     tgttggattg ataatggtaa ttcgaatgaa ttaggtttat agtctgagag agtgtaacgt      5760
     ctgctgatcg catctgctga gtgcggtagg atacaaaaaa ctgtgccaac ggtaatcagg      5820
     ccaaccgggt ttttcctttt tttttttttt ttggaattat gggttccatt tttttttttt      5880
     ttgtcttgta gttttttgtg tgtgtttttt tttgtcagtg ttaaccaact gttggtcgtc      5940
     tctaccatca gtggtgtttg tgtgtctcac gtcggtgcaa gggtgtgtac tgtgtgacac      6000
     ctttactgga ggagtttttg agtcatagaa agaatttggt cagtcccgat tttgtctgct      6060
     gttggtcttt gaccgttgat tttcctgatt ctgtcgtttt atgggttgag tgcacggagc      6120
     gcttatccca gaaactgggt ctccgtacca gtttcgaaat tagttttcgt cattagttag      6180
     ttatgattta agttaagttt cgggttgggt tattggctag gttttgggaa ttataggcct      6240
     agttaagatt taaggggggc ggttgctttt attctagtct tatgtcttta gttttggtaa      6300
     gtgtttcccg attttgtctc tttgttcttt tcgatttatc tagtgcccgt atgggattga      6360
     gttgggtgct atcttttacc tctcctgttc tatcgtgtca atcctgtttc tctatgcttt      6420
     cgcatagagt atccagtgat ttgatagtag gtcacctaat tgaagtgttg agttcccgga      6480
     ttttactggt ttaaaatgtt gtgttgatac tcctcatatt ttcgatcatc ccaccggaag      6540
     tctttctgga ttccgatctg gtatcttaat tctgtctcgt tttctttctt gactcaactc      6600
     tcatcctggt ccgttttagg ttcccttgtg gagttacact acctagcgga aattttaatt      6660
     ctggtcggat tttatttctt cggtttaatt gtgttttgtt gtgagtattt ctctctagtc      6720
     ttgctttgct agcaatgttc ctactgagca gtctcgattt tctttgtttc tggatctttc      6780
     agggatttca gcattctggt tttcggcgac aattgcttcg tttcctttgg gagttatcta      6840
     acgagttgtg ttgtctgtcc gatagatgga gtgctgatat tccgatctgt tccgacattt      6900
     tggtgttttt tgtgtttctt gggttaatta tcctttcgga tagtagcgtt tttagggggg      6960
     gtgtc                                                                  6965
//
ID   Gypsy-56_TrVa-LTR repbase;    DNA;    INV; 1837 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-56_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-1837
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 360-360 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1837 BP; 380 A; 373 C; 344 G; 733 T; 7 other;
     tgtgccgttc cttcggtaca acacgcaacw atttttwttt tttgtttgtt ttcctttttt        60
     tctggttttc ttttcgttgc tgccggcggt tcgcccagcg gccgctactg cggctggcgg       120
     gcgaacggcg ggtggtattc ggggccagtg cagtgtccgt gaggtgctgc gacctggcgg       180
     atttttggtt gtactatttg tgcgtcggtg cgtactgtta cgtaatagga gggtgtctcg       240
     agtcattttc cattccagct gagattcwtt cgccgttttc tttcttgtga gacacgcatc       300
     gttttgtttt atctattgtc tcatttctct ccttttgata ttttggagaa tttctctgtt       360
     ttcttggatg gcgatcaggg agtcctgctg atttgaagct gtttattaaa tccccgtttt       420
     gggtaagtct tttttaatct ttaattctaa ttctaatctt ttgagagtac tttgggattc       480
     caacttcacg tgcctcaatt ttcctacaat gccggacttt gcactttccc tattatgttt       540
     cagttgccca gcgagttgtt tcatcccttt tctccttttt gtttctttcc taattatttg       600
     atcccgtttc ctttgtctct ccttgtgatt tttcctttta aaacctgagt tgtgccgtgc       660
     ctatgaattt ccccaagtca attcccattt cctaacctca acacctgtgg agcaaaatct       720
     ttatcatgta ttttcagttt ttctcatctc agacaatatg cgtccatttt acctttatct       780
     aattctgtga tccgttcgaa tccagtaatc atgtacgctt tttgacatat tttgatacca       840
     attttgtttg tagcatgctc cttctgagca cggctactga aatgtccttg accgtgtgcc       900
     acatttctct tagaatcttt gctggctcgt gatcgtccat ttactttatc atctatgttt       960
     ttatccgagc tttaaactta aaccttgtcg gcgccagtgc accttttcac ttttcttgtt      1020
     tgtaaatttt tctctataat cactgcgctg gagagtgagc acacggcaag tatttcattg      1080
     gtttttcatg ttttttctga accgtggggt ttctttgtat tattcacagg gttccggagt      1140
     gggagaccga aatccatttg tactgtgtct gaatggacgt cttgaataat tcctgttttt      1200
     kcctgacggc ttatcaatat tggtgccacg atcgtacagg ctgagtccct ttttcctttt      1260
     atttcggctt tgtctttctg cctttacact agtaccaggt tagacagaca tttaattatt      1320
     gtctaatttc tttggagaat acatcatggt ttcctaactc cggattagtg gttgcacccc      1380
     accagcaact ataactttct attttttttt tccttctgaa cggcgaataa ttttacggcg      1440
     aagttttctc tgttttggac ttggagaata ttattatgaa ttatttatga attattatta      1500
     tggattatta tgaawctcct gtaaagtgtc tatttgtaat ctgtaatttt aaaagtgtat      1560
     gaatgcgagt gtgagtgtgt cttttgggta attatttgat aaaaagaaaa aaaaaaacwa      1620
     tttgaaaatt tatctgtgat atattcttga tgaactgtga tatttgaatt tttgcctttt      1680
     tggagccacc gagcccagat tatatttcta ttaacttgca acccgttttg tgtcacttat      1740
     ttataatgtg ctctttgtgc gctgcctccc accttatctc ataattttca ccttccaaca      1800
     acaccttwaa aaaatatagt gggagtgcaa tgtagca                               1837
//
ID   Gypsy-57_AA-I repbase;    DNA;    INV; 4874 BP.
XX
AC   AAGE02020632;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_AA_;
KW   Gypsy-57_AA-LTR; Gypsy-57_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4874
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020632; Positions   21189   26062.
XX
CC   Positions [3885-4361] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           775..2442
FT                 /product="Gypsy-57_AA-I_1p"
FT                 /translation="MEDSRPLPQFRCKEIEKQKLFKEWKTWKGALECYFDA
FT                 YGICDQKQRRAKLLHLGGPQLQRVFHNLPDRENFPLVSLERQWYDVAVNAL
FT                 DAFFQPYRQDCLERYKLRQIKQKEGERFADFILRLRQQISDCGFDKYPEEV
FT                 KEVLSEIFLIDTIIEGCQSEELRRRILQQDRCLAEIESLGVTLEGIDHQVK
FT                 GFNRRNEQAGFGQQVLRIGNESGSLQKKFRYQSTGFKGKFSGKDGYTCYNC
FT                 GRRDHISTSEICPAKGKVCHACKRVGHFESSCRSRKRKQPQLTKNVRAVEE
FT                 SAPELAVQEAESSKTYYTFHSGNESNVVPCVVGGIQLDLLVDSGSDVNLVP
FT                 ANVWENLKQACIVVHQCVKGSSKILKGYANDNPLPILGTFVADVKVGHKAV
FT                 RAEFFVIKGGQRSILGDQTAKQLGILQVGLQVNSIAHQVEPFPKIKDVQVH
FT                 IHTDPEVKPVFQPVRRVPIPLEAAVDKKLNQLLATDIIEVKHGPATWVSPL
FT                 VVVGKSNGEPRICLDLRRVNKAVLRERHPMPVVDEYMARLGEGKIWSKLDI
FT                 KDAFLQVGR"
FT   CDS           2610..4853
FT                 /product="Gypsy-57_AA-I_2p"
FT                 /translation="MDQILAGCTGTYWYLDDVVVEGKDLQEHDERLNEVLK
FT                 RFNDRSVQLNWEKCVFRAKKIDFVGYTISAEGIYPLSSKIETILSFRQPDS
FT                 ESEVRSFLGLANYLNKFIPDLATLDEPLRQLTRKGCAFVWTEQHQQSFEQI
FT                 KAAMANAGSLGFFNTEDRTAVMADASPTGLGALLLQTDRSGCSRVVSCASK
FT                 SLTETENKYCQTEKEALAIVWSVERFYTYLYGNEFDILTDCKALEFLFTVR
FT                 SRPCARIERWVLRLQAFDYRVIYIPGEKNVADVLSRLATLKPIPFDPSEEI
FT                 AIRQVALYAATTAALDWKEIVKESREDPEICQILECLDQDKVDEIPLAYRI
FT                 VANELCRCDDVLLRTDRIVVPAVLRHRVLCVAHEGHIGMRMMKAHLRCAVW
FT                 WPKMDSAVEDFVKKCRSCALVAAPDPPVPMIRKEMPYGPWEEVAVDFLGPL
FT                 PEGQTLFVVVDFYSRFIEICEMTQITANDTILQLSKIFCRYGVPITLRADN
FT                 GPQLSTSCEEFSTFCEEMGIRLVNTIPYWPQQNGEVERQNRSILKRLKIAQ
FT                 ELGQDWRRVLDQYILSYHSTPHPTTGRCPFDLMFGRRIRSKLPQIPREVSA
FT                 DEGVSDRDREQKEKGKVYADQKRRACQSNIEVGDKVLVKRFRKENKLSTNF
FT                 SPEEHSVVRRRGADVTIKSLETGKECRRNISHLKKLSDVTSTCESSNDAVP
FT                 SNEEAEHNLVAGNEDIQVSTEARELIDRRLHLQRNRKEPARFLDYLPH"
XX
SQ   Sequence 4874 BP; 1419 A; 887 C; 1260 G; 1308 T; 0 other;
     caaagtggcg acgaagatag aggattgaag gtaagaaatg gatttccgaa aaatagtgtt        60
     ttgagattat cattatacca ttgtgttccg ctggcaaaga ggtggaagat ggcgtcagat       120
     tttcttggct catactttca ttttactgac gggcaatagt atgtgtgtaa tgccgatttt       180
     ctgaagtcga aggggtgtat gagaaaatgt tgacctgttg aaaatgttcg gatgaaataa       240
     aataaacagg ggagcagttg atgatagtct ttgagatgga tgctaacaaa acattgactt       300
     atatgctaca aatggggagt gataagaaga agcgttattt tctagagtgt acctgttggg       360
     gcaacaggag gggatcaaaa aggaaatttg gtcccgggtc acagtgaagt tgtttgtacc       420
     tgtaagtgta caggaggtga atgtctattc acgggtaccg ttgtgaaata tgaatgtacc       480
     tgttggcata gcaggggggg agtgtgcgat atgctcccgg gtataattta caaattagta       540
     tgtgtacctg gtcaatggac aggaggtgaa atataatttc acgggttcgg ttgcaaatgt       600
     attctaaaag ttaattagtt gaagtatacg aatcaaataa aatatgattt tctcgtgttt       660
     tgctttatta ttttatatga cgaattgaga taaacaaata tgacaataaa catattcaaa       720
     tgcaagctcg tgaaacggtt ggtttagaat ttcgaaattg tgttataatt gcagatggaa       780
     gactcccggc cactcccaca atttcgttgc aaagaaattg aaaagcaaaa gcttttcaag       840
     gagtggaaga cctggaaagg agctcttgag tgctactttg atgcttatgg aatttgtgac       900
     caaaagcaga gaagagcgaa gttactacat ctaggcggtc cacaactgca acgggtgttc       960
     cacaatttgc cggacagaga aaacttccca ttggtttctc ttgagaggca gtggtatgat      1020
     gtggcggtca atgcattaga tgcattcttc cagccgtatc gccaagactg tttggagagg      1080
     tacaagttgc ggcagataaa gcagaaggaa ggagaacggt tcgccgattt cattctacgt      1140
     ttgagacaac agatttccga ttgcggcttt gacaaatatc cggaagaagt taaagaggtg      1200
     ttgagcgaaa tattccttat cgatactatc atcgaagggt gccagtctga agaactgcgg      1260
     cgtaggatac tacagcaaga taggtgcttg gcggagattg agtcgttagg tgtgacgttg      1320
     gaagggatag atcatcaggt gaaaggtttt aacaggagga acgaacaagc aggttttgga      1380
     cagcaggttt tgagaattgg aaacgaatcg ggttcacttc agaagaagtt tcgctatcag      1440
     tctacgggat tcaagggaaa gtttagtgga aaggacggat atacttgcta taactgtggt      1500
     cgccgtgatc atatttctac ttccgaaatc tgtccagcaa aaggaaaagt ttgtcatgcc      1560
     tgtaaacgag ttggtcactt cgagtcgagc tgtcgatccc gaaagaggaa gcagccacag      1620
     ctgacgaaaa acgtgagagc tgtagaggag tccgcccctg agctagctgt ccaagaggct      1680
     gaatcatcga aaacctacta tacattccat tccggcaacg aatccaacgt agtgccatgt      1740
     gtggttggcg gaattcagtt ggatctacta gttgactctg gatctgatgt gaatcttgtt      1800
     cctgccaatg tgtgggagaa cctcaagcag gcttgtattg tagtacacca gtgcgtgaaa      1860
     ggcagcagta aaattctcaa aggctatgca aacgataatc ctctgccgat acttggaact      1920
     ttcgtggctg atgttaaagt tgggcataag gctgttcggg cggagttttt cgtcatcaaa      1980
     ggtggacaaa ggagcatttt gggagaccaa acggccaagc aactggggat ccttcaagta      2040
     gggctgcaag tcaatagtat cgcacatcag gtcgaacctt ttccaaagat taaagacgtg      2100
     caggtacaca tccatacaga tccggaagtt aagcctgttt ttcaaccggt tcgacgcgtc      2160
     ccaattccac tcgaggctgc agtggacaag aagttgaatc aactgttagc aacggatatt      2220
     attgaagtca agcacggccc tgccacttgg gtttcccctc tggtcgtagt gggaaaaagc      2280
     aatggagagc cgagaatttg ccttgatctg cggcgagtga acaaagcggt tcttcgtgaa      2340
     cgtcatccga tgcctgtggt ggatgagtac atggccagat taggtgaagg taagatttgg      2400
     agcaagttgg acatcaagga cgcattcctt caggtaggtc gttagagatg actaaataaa      2460
     gcaattgcaa ctatctatga tgtgtttgtc aggttgaatt agctcccgcg tcaagagatg      2520
     tcaccacatt tatcacgaac aaggggcttt ttcggtttaa aagacttcct tttggattgg      2580
     tctgtgctcc ggaactgttc caaaaggtca tggaccagat attagcgggt tgcactggaa      2640
     catattggta tctagatgat gtagtagttg aaggaaagga tctacaagaa cacgacgaaa      2700
     ggcttaatga agtattgaaa cgttttaacg atcggtcagt ccaactcaac tgggagaaat      2760
     gcgtatttcg tgcaaagaaa attgattttg tgggttatac tatttcagct gaaggtatat      2820
     atccattgag ttcaaagatt gaaacaatac tgtccttccg tcaacctgat tctgaatcgg      2880
     aggtccgcag tttcttggga ttggcaaatt atttaaacaa attcattcct gatttggcta      2940
     ctctcgatga acctctgcga cagttaacaa gaaagggctg tgcgtttgtt tggactgagc      3000
     aacatcaaca atcttttgaa caaatcaaag ctgcaatggc caatgccgga tcattaggat      3060
     tcttcaacac tgaagaccgc actgcagtca tggctgatgc tagtccaacg gggctagggg      3120
     ccctgctcct tcaaacagat aggtcaggat gtagtcgagt cgtcagttgt gcctcaaaat      3180
     ctttaacaga gacggagaac aagtactgcc aaaccgagaa ggaagccttg gctatcgtat      3240
     ggagcgttga gcgtttttac acctatttgt acggaaatga attcgatatt ttgactgatt      3300
     gcaaggcctt ggagttcttg ttcaccgtgc gctcgagacc ttgtgctaga atcgaacgtt      3360
     gggtattgag gcttcaagca ttcgactaca gagttatcta catacctggc gagaaaaacg      3420
     tagcagatgt tttatctcgg ctggcgacac tcaaaccgat cccatttgat ccatcagaag      3480
     aaattgcgat cagacaagtt gctctgtatg cagcaacaac agctgcatta gactggaagg      3540
     aaatagttaa agagtcacga gaagatccgg agatttgcca aattctagag tgtctggatc      3600
     aagataaggt cgatgagatt ccgttggctt atcgtatagt tgccaacgaa ctatgtcgtt      3660
     gtgatgatgt ccttttgaga actgacagaa ttgttgtacc tgctgtgctg cgtcaccgtg      3720
     tgttgtgtgt tgcccatgaa ggacatatcg gtatgcgaat gatgaaggct catttgcgtt      3780
     gtgctgtttg gtggcctaaa atggattcag cggtagagga ttttgtgaag aaatgccgct      3840
     catgtgcttt ggttgctgct ccggatccac ctgtaccgat gattcgtaag gagatgcctt      3900
     atgggccctg ggaagaagtt gcggtagatt ttttaggtcc attaccagag ggacagacac      3960
     tgttcgttgt tgtggatttt tacagtcgct tcatagaaat ttgtgagatg acacagatta      4020
     cagcaaacga cactatttta cagctgtcta agattttttg ccgttacggg gtgcccataa      4080
     ctttacgcgc agataacggt cctcagttga gtacttcttg tgaagagttc agcacttttt      4140
     gtgaagagat ggggattcgt ctggtgaata ccattccata ctggccgcag caaaatggcg      4200
     aagtggagcg acagaatcga tccattttga aacgactaaa gattgctcag gagttaggtc      4260
     aagactggag aagagttctg gatcaataca tcttgtccta ccattctact cctcatccta      4320
     caacaggacg gtgtcctttt gacctaatgt ttggaaggcg aattcgcagc aaactaccgc      4380
     aaataccacg tgaggtttca gccgatgaag gagtcagtga tcgcgatcga gaacaaaaag      4440
     aaaaggggaa ggtttacgct gatcaaaaac gacgagcttg tcaaagcaac attgaggtgg      4500
     gcgataaggt attggttaaa agatttcgca aagagaataa gcttagcaca aatttctcac      4560
     cagaagagca ttctgttgtt cgaagacggg gagcggatgt gaccataaaa tcgttggaaa      4620
     ctggtaagga atgtcgccgt aacatctcac atctcaaaaa gttgtcagat gtgacttcaa      4680
     cttgcgagag cagcaatgat gcagtgcctt caaacgaaga agcagaacac aatctagttg      4740
     ctggaaatga ggatattcaa gtttcaactg aggctaggga actaatcgat cgaagattac      4800
     atttgcaacg aaataggaaa gaacctgcta ggtttttgga ctacctgcca cactaaaata      4860
     agttaagggg gggt                                                        4874
//
ID   Gypsy-57_AA-LTR repbase;    DNA;    INV; 207 BP.
XX
AC   AAGE02020632;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_AA_;
KW   Gypsy-57_AA-I; Gypsy-57_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020632; Positions   20982   21188.
XX
SQ   Sequence 207 BP; 66 A; 26 C; 61 G; 54 T; 0 other;
     tgtagggtcg taccctcggt tgaatcctaa atataaataa agctgtttta gttcagtgta        60
     ggatgatgga tggtagagag gagagagggg aagaagatca gtgtcagcaa gggaagttgg       120
     atgtagcggt tgttgagcaa aatatatact gtgtatagaa ttcgtgagaa acgtgaaagt       180
     gtacttctac gagtaatccg aacccca                                           207
//
ID   Gypsy-57_AnFu-I repbase;    DNA;    INV; 4364 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4364
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2941-2941 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..4342
FT                 /product="Gypsy-57_AnFu-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTVEELCENFTKTGLIRECEKLGLPTTGGKMKIAEK
FT                 IIKHRSKTSSNSENGDALEGEKDDDRCSEDDGNCEKDDSQHSGNEEHDEDD
FT                 GPSTDDEDDDEDDNIDEGDSDSIFQTAIKATSTPKNPRRHAPKRLKVYSFR
FT                 DMEDSIESFGAEEGEDVRMWLKQLKSVCKAARWDDEQQLIMCRKKLAGTAR
FT                 RFVFSLRTSFSSFAKLEKALIKEFAPRIRASDVHRALTNRKKKTTESIRDY
FT                 IYEMQRLAIPIDLDEPSLCEYIVSGITDDEHHQSILLEAQSIERLKKKLLN
FT                 FEKVTKTAKSKTKREEFTKKEDKLRPNEKANNRQIKKQNCFNCGETSHISS
FT                 ECPQKNEGPKCFSCNMFGHRARDCKRGSTGSKSGKQNVSMCSEQQSHCVRS
FT                 PPIPVSREDEFVTKQPTKLTGKKTMITMKIGVIAIETLFDTGSSLNLMAYR
FT                 TYKKIGQPGLDATTVKFTGFGGTEIAAQGVCTVNVTIENEHYREVQFYVVT
FT                 NESMPFEAVLGTASLEHFDVSVTTNGVMLKRKANIYADVETSPGNFIFNIN
FT                 VEKEEVEAPVKYKDAITECIRNYKPKDCPHEDNELKIQVSDEIPVRAHPRR
FT                 LAPLERKAVKSQVDEWLRDGVVRPSNSPYASAVVVVPKKDGSRRVCVDYRE
FT                 INRKIIRDSYPMPIVEDQIDQLESARVYSTLDLKNSYFHVPIAEDSRKYTS
FT                 FVTQEGQYEFCRAPFGLCLSGSAFGRFINSVLRELINDGTVLAFVDDIIVP
FT                 AKDEEAGLKSVKRLLSNAEKAGLQFNWKKCRFLQRRIEYLGYTIYEGRIEP
FT                 SQLKVEKVKRFPMPTTTKQLQRFYGLASYFRKFVVNFAEVMRPLSTLLRKD
FT                 ERFEVTDDVKKAFDHIKTILSQYPVLRIFKSGLETEIHTDASKEALAGILM
FT                 QRAEDDGKFHPCYYYSRLTNQAEKNYHSFDLESLAVVESVKKFRCYLLGQR
FT                 FKIITDCIAFKQSLVKKNPNARTSRWLDVLAEFEYAVEHRSADRMRHVDAL
FT                 SRANVMVVTSVVCARIAAAQRADSTIAEIIRRIEHEGSYDEFTVADGVLHK
FT                 GSAGAEKLYVPSEMQSQIIRSAHEQGHFGVKKTKERIATDYFIPNVDNKIA
FT                 EVIASCVRCIVGDRKRGKMEGELQSIPKGSVPLDTFHIDHMGPMPSTRKSY
FT                 NHIFTIIDAFTKFVWLFPVKSTTAEEAIKKLKIVANTFGHPKRIISDRGTA
FT                 FTSKAFENYCAENNIESHKIVTGVPRGNGQVERIHGVIIPILTKLSVEKSD
FT                 EWFKHVDRVQTVINNSWQRAIGMTPFELFVGVKMKTKDDVMLAQILKEEMQ
FT                 KIFNDGRDELRQHARQNIVKMQEENRKYYNLRRKKTRVYKVGDLVALPFTQ
FT                 FRTGGKVKKRYLGPYEIKRTLPNDRYEVRKINEEDEGPLLTTTAGDMLKNW
FT                 SHSD"
XX
SQ   Sequence 4364 BP; 1469 A; 777 C; 1130 G; 988 T; 0 other;
     tgggggctca accgggatcg tgagtgagtt taaaacaaaa ggataagttg gtgttaattt        60
     gaaacgtgtg ataactaaag acgataatat gacgacggtt gaagagctgt gtgagaattt       120
     tacgaagacc ggtttgatac gcgagtgcga aaagcttggt ttgccaacca ctggtggaaa       180
     gatgaaaatt gccgaaaaga tcatcaaaca tcggagtaag acgagctcca atagtgaaaa       240
     cggtgatgct ttagaaggcg aaaaggatga tgatcgttgt tcggaagacg acggtaactg       300
     tgagaaagac gactcacaac actctggcaa cgaggaacat gacgaagacg atggcccaag       360
     cactgatgac gaagatgatg acgaggacga taatattgat gaaggagatt ccgattcaat       420
     atttcagaca gcaattaaag ctacatcaac acccaaaaat ccacgacgac acgcaccgaa       480
     acgactgaaa gtgtattctt ttagagacat ggaagatagc atcgaatcct tcggcgccga       540
     ggaaggagaa gatgtgagga tgtggctgaa gcagctaaag agtgtatgca aagcagcgcg       600
     atgggacgac gaacagcagc tgattatgtg ccgtaagaaa ctagccggta cggctagacg       660
     attcgtattc tcccttcgga ccagtttcag tagttttgcg aagttggaga aggcactgat       720
     caaagaattc gctccacgca taagagcgag tgatgtgcat cgtgcattaa ccaaccggaa       780
     gaaaaagaca accgaatcta tccgagatta tatttacgag atgcaacggc ttgcgatacc       840
     gatcgatctg gatgagccaa gcctatgtga atatatagtg agtggaataa ccgacgatga       900
     gcatcatcag tcgatattat tagaagctca aagcatcgag cgactaaaga aaaagttgtt       960
     gaatttcgaa aaggtaacga agactgcaaa gagtaagacg aagcgtgaag agttcacaaa      1020
     aaaggaagac aaactacgac cgaacgaaaa ggcaaacaat aggcagatca aaaagcagaa      1080
     ttgtttcaac tgtggcgaga cgtcgcacat ttcgtctgaa tgcccacaaa agaacgaggg      1140
     accgaagtgc ttctcgtgca atatgttcgg tcatcgggca cgcgattgta aaaggggcag      1200
     taccggtagc aaaagtggta aacaaaatgt atcgatgtgc agcgaacaac aaagtcattg      1260
     tgtgcgctcc ccgccaattc ctgttagccg agaagacgaa tttgtgacga agcagcctac      1320
     gaaactaaca ggaaagaaaa caatgataac catgaagata ggagtaatcg ccatagaaac      1380
     actcttcgat accggtagtt ccttaaacct gatggcatat cgtacttaca agaaaatcgg      1440
     acagccgggt ctagacgcta ccacagtgaa atttacaggt ttcggtggaa cagaaatcgc      1500
     ggcacaaggg gtttgtacag taaatgtgac tatcgagaac gaacattacc gggaagtgca      1560
     gttctatgtg gtgacaaacg aaagcatgcc attcgaggct gtactaggaa cggcatccct      1620
     agaacacttt gatgtgagtg tgaccactaa cggtgttatg ttgaaaagga aagctaacat      1680
     ttacgcagac gtagaaacgt ccccagggaa ctttattttc aatattaatg ttgaaaagga      1740
     agaagtggaa gcacccgtaa aatacaaaga cgcaattaca gagtgtattc gaaattacaa      1800
     gccgaaagat tgtccgcatg aagacaatga attgaaaatt caagtgagtg atgaaatccc      1860
     ggtgcgtgcg cacccaagac gtcttgcgcc gctggaaagg aaggcggtaa aatcgcaggt      1920
     agacgagtgg ctacgtgatg gtgtggtgcg tccatcaaac agtccatacg ctagtgcagt      1980
     cgtggtcgta ccgaagaaag acgggtcgcg tagagtgtgt gtggactatc gggaaattaa      2040
     ccggaaaatc atacgcgatt cgtatcccat gcctatcgta gaagatcaaa tcgatcaatt      2100
     agaaagcgct cgagtgtatt cgacgttaga cctaaaaaat tcttacttcc atgtgccgat      2160
     cgctgaagat agtcgtaagt acacgtcatt tgtcacccaa gaaggacaat atgagttctg      2220
     cagagctcca ttcggattgt gtctcagtgg tagtgcgttt ggcaggttca taaattcggt      2280
     attgcgtgag ttgattaacg atggaaccgt attagcattc gtggatgata taatagtgcc      2340
     agcgaaggat gaagaagcgg gtttaaaatc ggtaaaacgg ttgttgagca atgctgagaa      2400
     agcaggactg caatttaatt ggaagaagtg caggttcttg caaagacgta ttgagtatct      2460
     cggatacaca atatacgaag gacgcataga accatcgcag ttgaaagtag agaaggtgaa      2520
     gagattcccg atgccaacta cgacgaaaca attgcagcgg ttttacggat tggcgagtta      2580
     ttttcggaaa tttgtagtga attttgcgga agtgatgcgt ccattatcga cattgttaag      2640
     aaaagacgaa agatttgaag taacagatga tgtaaagaaa gcgtttgatc atataaaaac      2700
     aatattaagt caatatccag tgcttcggat tttcaaatca gggcttgaaa cggaaatcca      2760
     tactgacgca agcaaggaag cgttggcagg tattttaatg cagcgggcgg aagacgacgg      2820
     aaagttccat ccttgctatt attatagccg gttaacaaat caggcagaaa agaattatca      2880
     ttcttttgac ttggaatctt tggcagtggt tgagtctgtg aagaagttcc ggtgttactt      2940
     gcttggacaa cgatttaaga taataacgga ctgcatcgcg tttaagcagt ccttggtgaa      3000
     gaaaaatccg aacgcgagaa ccagcagatg gctagatgtg ctagctgaat tcgaatacgc      3060
     ggtggaacat cgttcagcag acaggatgcg acacgtggat gccttatcac gagcgaacgt      3120
     gatggtggta acgtcagtgg tgtgtgcgcg aatagccgca gcgcagcgtg ctgattcgac      3180
     tatagcagag ataatacgca gaatcgaaca tgaaggaagc tatgatgaat tcacggtagc      3240
     ggatggtgtt cttcataagg gcagcgcggg ggcagagaag ttgtacgtac cgagcgaaat      3300
     gcaaagtcaa ataatacgaa gcgcacatga gcaaggacat ttcggtgtaa agaagacgaa      3360
     agaacgaatc gcaacagatt attttattcc caatgttgat aataagatag cagaagttat      3420
     agcgtcgtgc gtgagatgca tagtaggaga tagaaagcgg ggtaagatgg aaggagaact      3480
     tcaatccatc ccaaagggaa gcgttccttt ggacacattt catattgacc atatgggacc      3540
     tatgccctcg actaggaagt cctacaatca tatctttacg ataatagatg cgtttaccaa      3600
     gtttgtttgg ctatttccgg taaaatctac aacggcagaa gaagcaatta aaaagttaaa      3660
     gatagttgca aatacgtttg gacatccaaa aagaattata tccgatagag gtacggcgtt      3720
     cacttcgaaa gcgttcgaaa actattgtgc ggaaaacaat atagaatcgc ataagattgt      3780
     aacaggagta ccgcgaggga acgggcaagt cgaacgaatc cacggcgtaa taattccgat      3840
     cttaacgaaa ttatctgtgg aaaagtcaga cgagtggttt aagcacgttg atagggtaca      3900
     aacggtcata aacaacagct ggcaaagggc aattggaatg actccattcg agttgttcgt      3960
     tggcgtgaaa atgaaaacga aggatgatgt tatgttggcg caaatattga aagaagaaat      4020
     gcagaaaatc tttaatgatg gacgagacga attacgacag catgcgcggc aaaacattgt      4080
     taagatgcaa gaggaaaata gaaaatacta caatcttcgt cgtaagaaaa cacgagtgta      4140
     caaggtgggt gatttggtag cgttgccatt tacccaattc aggacaggag gaaaggtcaa      4200
     aaaacgatat ttgggtccat atgaaataaa aagaacactg ccgaatgata gatatgaggt      4260
     tcgcaaaata aacgaagaag atgaagggcc tcttctaacg accacggcag gagatatgtt      4320
     gaaaaattgg tcacattcgg attgattatt atcaggaaag gccg                       4364
//
ID   Gypsy-57_AnFu-LTR repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-213
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2869-2869 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 213 BP; 77 A; 32 C; 58 G; 46 T; 0 other;
     tgtgggaaga gataagggaa agaaagagag cgagtgaaaa atctaagcgg actgtctgag        60
     agagatagag agagagagag cgcggaagga atatattagg aggcgcgctg caggattagc       120
     cattcgcgta tcgacagtca gaacggaacg accattggaa accattgtta ataccttata       180
     attgtttaaa taaattcaac ttatttccct aca                                    213
//
ID   Gypsy-57_CQ-I repbase;    DNA;    INV; 8597 BP.
XX
AC   AAWU01017621;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_CQ_;
KW   Gypsy-57_CQ-LTR; Gypsy-57_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8597
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 493-493 (2011).
XX
DR   GenBank; AAWU01017621; Positions   18928   10332.
XX
CC   Positions [4504-4977] - Integrase core
CC   'ACGC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           694..5331
FT                 /product="Gypsy-57_CQ-I_1p"
FT                 /translation="MANLETKDLIQLIPEFDGSLDSLDQFLMLIDYYADQI
FT                 PEGEDQRKFLNIVFMKLKFKAAARINRIYASTWEETKANLIREFGIKTTFG
FT                 SIIEQIETLKQGRDESFKSYAGRVLDIKYEIIKIDQSYNENSFTAYSLKSH
FT                 IIVGIINNEIKEIATNNRHMKLENLLEFLENERIDRESLRTLEQRLLASTE
FT                 NSNHNKFRNFRYNKNTNFYQRNNYQANKFYECYKTNTAKSTLKRTYTNSRR
FT                 NKNQIPNNFKLQFNEYIPPHETLKINFNNDSIFYANIATLARPTKFHKFII
FT                 DSASCNNFVRWDVVSNMRLTNIDFNDRISIRGVHGIAEDTVGSVNMILLIG
FT                 NSKYEEKFYILKHFADDAILGAHFLKKYTLYISQSFDYIVLRTPDTKNMQY
FT                 HNHAMTNLFRNNDIENINKVNMAGIEANSYDNFNTNYDENNRNNYDNDNGC
FT                 NGRIQPYIEEYYDDQIEIDDDNQDYPKEMNLENDRDYDVIENMKHEKLTGN
FT                 DRMRKIYELVKTDHLKGDINQEINNILSDFNEIFYLEGDELTYTNLTMHDI
FT                 ETTTEIPINKRQYRFPEATKKHVEEQVEEMLRLGIIRPSKSPWNAPVLCIP
FT                 KKDLDAEGNKRYRIVVDFRDLNTITKPFVYPIPLISEILDSIGEARYFSTI
FT                 DLKSGFYQIPINPKDAAKTAFSTFLGHYEFLRMPMGLKNSPSTFQKFTFTL
FT                 IYEIQPVNAFLYLDDIIVFGRTIEEHNENLYKVLNALHEHNLKVEPSKCKI
FT                 LRKEVRYLGHIISEEGIRPTSENIDTIKNMKRPQTIKNVRSFLGTVNFYGK
FT                 FIPNIADKRKPLNALLKKNVKFIWTEECENAFEELKNYLISEPVLVRPNYN
FT                 DKFVLTTDASDYAIGAVLTNEKSNDHPIAYASRALIGAERNYFTIEKELLA
FT                 IVWAVDHFKHFIYNQDFIVYTDHRPLVALWHLKETSPTLTKLRLKIQGIGC
FT                 EIRYKQGKENVVADFLSRLNNDEVHADDKQASKLVAITTRQQAKQNRQNIS
FT                 DNQNSTNTPNRQNSSRNNNNWNNNMNGLQQIDINLDNDDDSNDKTFTYKDF
FT                 QDTDIDFNVLKFSKNIIPFEQAEATFMILNSVTVHKELSKYIDLPHGIKDY
FT                 TKENIFVFPQKKIWGLILNGTYRSAVKNEEFFDGLLKCFDDYPDFAKDASV
FT                 IQIISHRIFKTELELNLLRFFAMKLSKSFTLYATENERIYVKPKDRDQVLK
FT                 DFHDAPLGGHVGGKRMIKRMSPLFTWENMRRDVLNYVKQCDSCQKNKIWPA
FT                 NKMPMKITTTSYEPFDKIYMDVVMLPISNNGNNCGLVIQDDLTRFLIVAPM
FT                 ENQESTTVARTFVENFVCKFGAPKEVVTDRGTNFVSKLLQHTCKILHIKKI
FT                 VTSAYHPQANLVERSNRELKVYLRNFIGKDPQCWDELIPYFMFEYNTTENS
FT                 STGYSPYELLYGRKATIPSTIYKINDSDLNYDDYICSMKDIFKDAHETARN
FT                 NLILSKEKRKEIYDKKTNDWVPMWGDRVLVQMVQTGIGQKLQNKWRGPYDI
FT                 VKFNSDQTTTIKNGNKFEDVHNNRLRKYND"
XX
SQ   Sequence 8597 BP; 3494 A; 1183 C; 1492 G; 2428 T; 0 other;
     ggtggtgact agcggaaagc aacgctgtgt gtgtttggac acgccattat gattggacaa        60
     aaccgagagt tgaaaatgtg actatgtgtg aaagttaatg aacaaaatga tttcgcgaag       120
     taacaaacag ttaaaatagt gtaaaaaaag taaaaaaacg ttaaattgaa gaaaatgtta       180
     tgtgaggagt tctaagatgg aagcaaatgt gcagcagtac gagatggaat caaaacgggc       240
     tcgatcaatg gcagaagcat cgaaaatttc aaaaccggcc aacgatggac aacactaggg       300
     attcaacaat gacgagatca tctggatcaa ctggagacga aaatcagcca catcggacac       360
     ccaagaagac gaccatggaa atctggcagt ttagggtgag taaacaaaag ttataccgaa       420
     atttgttgta aatagttaaa aacacgctta aaagggtgta cagcaaccaa ggaagttgtt       480
     gtcttcttat gccaaaattg actaacttac ggacccaatc ctgcacaaat ctgattgtaa       540
     aaacaggcaa attttgttgt aaatcactta gtagacagta ctttagggga tgaataaaac       600
     attatatcga tagttcccgt agtttcgaaa atactaaaat atctgtaaca aaaatcttgg       660
     tgcaaaaact cttgttgatg tgcaccgtta aagatggcga atttggagac gaaggattta       720
     atccagctta ttccagaatt tgatgggtca ttagactcac tggaccaatt tttaatgtta       780
     atagattatt atgctgatca aattcctgaa ggcgaagatc agagaaaatt tttaaatatt       840
     gtttttatga aactaaaatt taaagcagca gcacgtatta accgaattta tgcaagtact       900
     tgggaagaaa ccaaggcaaa tttaattaga gagtttggta tcaaaactac ttttggtagt       960
     ataattgaac aaattgaaac tctgaaacaa ggacgggatg aatcatttaa atcatatgca      1020
     ggtagagttc ttgacataaa atacgaaatc ataaaaattg atcaaagtta caacgaaaat      1080
     tcatttacag cttatagctt aaaaagccac attatagttg gaattataaa taatgaaatc      1140
     aaagaaattg ccacgaataa ccgtcatatg aagttggaaa atttgctaga attcttagaa      1200
     aatgaacgaa ttgacagaga gtctttaaga actctcgaac aaaggttact tgctagtact      1260
     gaaaattcaa accataacaa attcagaaat ttcaggtaca ataaaaatac aaatttttat      1320
     caaagaaata attatcaagc taacaaattt tatgaatgtt ataaaacgaa tactgcaaag      1380
     agcactttaa aacgaactta tacaaatagt cgacgcaata aaaatcaaat tccaaataat      1440
     tttaaactgc aatttaacga atacattcca ccacatgaaa cattaaaaat caatttcaat      1500
     aatgattcaa tattttatgc aaatattgct accttggcaa ggccaacaaa atttcacaaa      1560
     tttataattg actccgcatc atgtaacaat tttgtaagat gggatgtggt tagtaatatg      1620
     cgtttaacta acattgattt caacgataga atttccatta gaggggttca tggaatagca      1680
     gaagatacag taggatctgt aaatatgatt ttattgatag gaaattcaaa atacgaggaa      1740
     aagttctaca ttttgaagca tttcgctgat gatgcaattc ttggagcaca ttttctaaag      1800
     aaatacacct tatatattag tcaaagtttc gactacatag ttttaagaac gcctgataca      1860
     aaaaatatgc aatatcataa tcatgcaatg accaatttat ttagaaacaa tgacattgaa      1920
     aatataaaca aagtaaatat ggcaggtatt gaagcaaata gttatgacaa ttttaataca      1980
     aattacgatg aaaataatag aaataattat gataatgaca atggctgcaa tggcagaatc      2040
     caaccgtaca ttgaagagta ttatgacgat caaattgaaa ttgatgatga taaccaagat      2100
     tacccaaaag agatgaattt agaaaacgat cgggattatg atgtgattga aaacatgaag      2160
     catgagaaac ttacaggcaa cgacagaatg agaaaaattt atgaattggt taaaacagac      2220
     cacttgaaag gtgatatcaa tcaagaaatt aataatattt tgagtgattt taatgaaata      2280
     ttttatttag agggggacga gttgacttat accaatttaa ccatgcacga tatagagaca      2340
     acaactgaaa ttccaattaa taaaagacaa tatagatttc ctgaagctac caagaaacac      2400
     gtagaagaac aagtggaaga aatgctaaga ttagggataa tacgcccaag taaaagtccg      2460
     tggaatgcac cggtattatg catcccaaag aaagacttag acgccgaagg caacaaacgc      2520
     tacagaattg tagtggattt tcgagaccta aatacaatta ctaaaccatt tgtgtatcct      2580
     ataccgctta ttagcgaaat tttggacagt attggagaag ctcgatattt ctcaaccatt      2640
     gacttgaaat caggatttta tcaaatccca attaacccga aggatgctgc gaaaaccgct      2700
     ttttcaacat ttctaggaca ttatgaattt ttaagaatgc caatgggact gaaaaatagt      2760
     ccatcaacat ttcaaaaatt tacattcaca cttatttatg aaatacaacc agttaatgcg      2820
     tttttatact tggatgatat tattgtattc ggtagaacta tcgaagaaca caacgaaaat      2880
     ttatataaag ttttgaatgc attacatgaa cataatttaa aagtcgaacc atcaaaatgt      2940
     aaaattttac gcaaagaagt cagatatttg ggtcatatta ttagtgaaga agggattcga      3000
     ccaactagtg aaaatataga tacaatcaaa aacatgaaaa ggccgcagac gattaaaaat      3060
     gtgagatcat ttttgggaac tgttaatttt tatggaaaat ttattccaaa cattgcagat      3120
     aaacgtaagc cacttaatgc attattaaag aaaaatgtga aatttatttg gacagaagaa      3180
     tgcgaaaatg cttttgaaga attaaaaaac tatttaattt cagaaccagt tttagttaga      3240
     ccgaactaca atgacaaatt tgttttgaca actgatgcta gcgattatgc tatcggagca      3300
     gttcttacta atgagaagtc aaatgatcac cccatcgctt acgcaagtcg tgcgcttatc      3360
     ggggctgaaa gaaattattt caccattgag aaggaactac tagctattgt ttgggcagta      3420
     gaccacttca aacattttat ttataaccaa gattttatcg tttacacaga tcatagacca      3480
     ttggtagctc tatggcattt gaaggaaaca tcaccaactt tgacaaagct tcgtttaaaa      3540
     atccaaggca ttggatgtga aattcgttac aagcaaggaa aggaaaatgt ggttgcagat      3600
     tttctctcac gtttaaataa tgatgaagtt catgcagatg ataaacaagc atcaaaatta      3660
     gtagcaatta caactcgtca acaagcaaaa caaaatagac aaaatatttc agataatcaa      3720
     aactcaacaa atactccaaa cagacagaat tcatctagaa acaataataa ttggaataat      3780
     aatatgaatg gacttcaaca aattgacata aatttagata atgacgatga tagcaacgat      3840
     aaaacattta cctacaagga tttccaagat acagatatcg attttaacgt tttaaaattt      3900
     tctaaaaata ttataccatt tgaacaagcc gaagctacat ttatgatatt aaacagtgtt      3960
     acggtacaca aagaattgag taaatacatt gaccttccac atggtattaa ggattacacc      4020
     aaagaaaata tatttgtatt cccgcaaaag aaaatttggg gtttaatttt gaatggaaca      4080
     tatcgttcag cagttaagaa tgaagaattt ttcgatggtt tattaaaatg ctttgatgat      4140
     taccctgatt ttgctaaaga tgcatcagtt atacaaatta tatctcatag aatatttaaa      4200
     acagagttgg aactaaactt attacgattt tttgcaatga aactttcaaa gtcatttaca      4260
     ctatatgcaa cagaaaatga acgaatttat gtaaagccaa aagacagaga tcaagtgctt      4320
     aaagattttc acgacgcacc gttgggtggc catgtcggag gtaaacgaat gattaaaaga      4380
     atgagtcctc tatttacatg ggaaaatatg cgaagagatg ttttgaatta tgtaaagcaa      4440
     tgtgattctt gtcaaaagaa taaaatatgg ccagcaaata agatgccaat gaaaattaca      4500
     acaacatcgt atgaaccctt tgataaaatt tatatggatg tggttatgtt accaatttct      4560
     aataatggaa acaattgtgg acttgtgata caagatgatt taacaagatt tttgattgta      4620
     gctcccatgg aaaaccaaga aagtactact gttgctagaa cttttgtcga aaactttgtt      4680
     tgtaaatttg gtgctcctaa agaagttgta accgatcgag gtacaaactt tgtaagcaaa      4740
     ttattgcaac acacatgcaa aatattacac attaaaaaga tcgttacaag tgcatatcat      4800
     cctcaagcta atttagtaga gagatcaaat agagagttga aagtttattt acgaaatttt      4860
     attggcaaag atccacaatg ttgggatgaa ttaataccat attttatgtt tgaatacaat      4920
     actacagaaa attcatcaac tggatattcc ccctatgaac ttttgtatgg aagaaaagct      4980
     actataccaa gcacaattta taaaatcaat gattcagatt taaattatga cgactatatt      5040
     tgttcaatga aagatatatt caaggatgct catgaaactg ctagaaacaa cttaatattg      5100
     tcaaaagaaa agagaaagga aatttatgac aaaaagacaa atgattgggt accaatgtgg      5160
     ggagatagag ttttggtaca aatggtacaa acaggaattg gtcaaaagtt acaaaataag      5220
     tggcgaggcc cttacgatat cgttaaattt aacagcgatc aaacgaccac tattaaaaat      5280
     ggcaacaaat ttgaagatgt acataataat agacttagaa aatacaatga ttaatattag      5340
     ataaagtttt atatcaaaat ataccagtat gattttttta acaatatata ttgaaaatac      5400
     cttaaaatta aatgctccaa tacaagataa tatattttat aatgataatt acagtacaat      5460
     caaatggaat atagataaaa attacgatga atgaaatgaa tgacatagta tcataaacga      5520
     ttaatatcag aagactacaa tgaatgaaaa taataatttt aaaccatggg attatttatg      5580
     tatattaaaa aaaaaaataa ttatatatat aaaaaaatat ggaattgata tgcttgatga      5640
     attagaaaaa aacgattgtt atcaagagaa ttaaatgaaa aaaaaatgtt acaaatacca      5700
     atttttttat agaaaaataa acatggcaaa ataacatatg attgatttaa tataattaaa      5760
     tgattgatga attaatgttg agttaaacaa aatatgaatg attattatca aaaaatgcac      5820
     aaacaagatg aatgttatgg attggggatg aaagataatt tttacaaatg attgaattta      5880
     tagggaacat attaagaaaa ataccagtac tgagtttata catttttttt gaaaaaaacg      5940
     tgaagcgatt atgatcaata taaacataat aatgaagcag tgatgaaaca cgttgaaaca      6000
     attaagaagc tgttgggttg caattttggg aatatattta attgagctaa aatgggttaa      6060
     cagggtactg gaaaaacaat gacgcaattt ttaactacaa ataaaaacaa atcaaacgga      6120
     ctgaacaata acgaaatttc aacgacaggc aaatgaagat ggtgtgatta ttaaatgttt      6180
     caaaacaaca tgtatgcaag taagaatgtg tgtgagaata attggacaag ggactgcagc      6240
     ccagaatgat tgttgaatgt aaacatgtgt tttataattt acttaacaat ggattaagaa      6300
     tatattttca gacttttata cgctaatacg aaggatttac aggaaaccat tggaagacga      6360
     tcaagaagac aacaatatca gaaagaacgc ttgcaaggac gaatatgaac cacagctcac      6420
     ggaaaggtaa catttgtgag tatatcgtgg ggaaactaaa aagatcgaaa aggacggtaa      6480
     aagttccgat ctagggatac ataaacagat aaagcaacgc caaagggatt aaaaagtaga      6540
     caattgtact ctatggggag agttttatgt cgaatatagc ttcaaaacag ttgtaatcca      6600
     tggggggatt caatatgtta aaaacatttc aaaacatttg cactttacgg ggatagtcaa      6660
     atgaaaatta aagggaatgg ataaataacg cttcaaggga aaatcaaggg ataaaataat      6720
     gcttcaaggg aaaaacacct ttaaacagat aaaatgcaga gaaaaaaaat cagaacgata      6780
     tcattaaaat gataattgaa ccaactaatt atcttgcaaa ttcagctatt ttattgcgaa      6840
     ttgctcaaat aaacaaattt attgaatggg tttgacaaat ttgaaaacac aaagtgacag      6900
     acaagtttca taaaaagttg atataacaga aaggatatct taacatacgc agttttgcaa      6960
     tgacaagatg ataggatgta tagatcaatg aaaaacttta tagagtaatt ttttttattc      7020
     aagtataaaa ataatagtca ataagaactg atttttttta gtattgaaaa taatagaact      7080
     gatttcatat aaaaatatca acaagattta taagattgta agtaaatttg attttcaatt      7140
     ttgcacagaa attaaatgat aggtacctga aaattataaa atattgttca tgcgaagaaa      7200
     acaattaaga catttttgtg ggagatacaa aagtagaaac tgaagtaaaa tatgacagag      7260
     acgggagacg aaacacaagg atgatcgacg cgttcgtatg ctgagaggtt ctacgcgttc      7320
     gtatgcagaa gtttgtgatg gcaagatggg gagtggcaaa gtcatgcggg aggttggaca      7380
     ggtaacggtg ttgatgttgt tgtaaaaggt catatcaatg aggatcaagt cgaattaaaa      7440
     cgcaaattta gtaacgaaac attcacgtaa aacaaattac taaatcgaaa tgtggaatta      7500
     agcgaagtaa agatggttga aatgcgaaac atcaattatg gaacaaaaat gcaagttgag      7560
     atcatactgc acgtctgaaa ctattgaaaa ggagaagatc atgataaaca aatggtaaca      7620
     tcatccgatg tcattaatct acaaaagcca aagttgcaaa ttacacgaaa agacaatttt      7680
     ggactaacaa catgtcctaa acatttgata aaagaattac atcaatcgat gacaataatt      7740
     tgagattgtc aaagatgcaa agcaactgga aaagtcaatt ttggacaaaa atactggatt      7800
     tacgaacaat tctgcaatac tcggcaagta agaagtcaat gcactctcaa aattgaccac      7860
     agtcaactca cagctgggtt atgaagcata attcatgatg gaaacgacaa ttgcactaat      7920
     caacgaaatt caacacctta gcctcgaaaa ctgatcaatt gaccaagtca ctgtggaatg      7980
     aatagcctca cgatagagac gatttttgaa ggaagacgac aacgataaca accagccgat      8040
     caacacagtt ctacaacaga ttttgcttac agtgagaaaa atgcaatgat tttttttagg      8100
     agagataatg aaaattaatt tcaaatgcat gtttatttag atcagtttca atgaaaatat      8160
     ttttacaaga gaaattcaaa acagtaaatc aagcaattta acaggacaga agatcaaaag      8220
     agtaatgaaa ataattttac agtagaaaaa atcaaaagag caattataat tataaaacaa      8280
     tttacaagaa agcacaagaa gaacaaattg taaaccgcac gatcactaca cccgacaata      8340
     ttctttccat agatgatcat ttctttcaga cgatcatcta gctgataagt gtgggggaga      8400
     ttaaccgaac catttttttt aaatcaatat tttatagcca gccatcaaag tatcttttta      8460
     tgaatttttg caaagtattt tttacacaat ttaaattatt gactttggga atattcttcc      8520
     aaccaacaaa taactttcga tagatgttct taatgctttt caagaataca aacatctagc      8580
     tgataagtgt gggggaa                                                     8597
//
ID   Gypsy-57_CQ-LTR repbase;    DNA;    INV; 1136 BP.
XX
AC   AAWU01017621;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_CQ_;
KW   Gypsy-57_CQ-I; Gypsy-57_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 494-494 (2011).
XX
DR   GenBank; AAWU01017621; Positions   10331    9196.
XX
SQ   Sequence 1136 BP; 327 A; 256 C; 259 G; 294 T; 0 other;
     tgcagcgacc tcaaatttaa atcattaaat ttgtccattt ttcgaacctc accaccgttc        60
     tgagcatgcg cgcttacgca agcataaata attttacccg tcgactcgcg ttgcgcgaca       120
     aataattaag cttatgtaca ggtgtggatc atgagtcatc ctcacctgaa aagcccttta       180
     ttaaatttcg ccaattatta ggcaatcaaa aaaatggtta agctttcaat tatgaatgtg       240
     cgatgttatt ccacagggga aattgaaggt gtggcttaac caaattcatt ggcatgtttg       300
     ttcaatggag aattcgacct tctcattatt gaccaacatt tttgagaata attgaggaac       360
     attattttga tattcctata acataattta aagtttcacg acaatggttc gaacccatga       420
     cttccgattt tgaggtgtac tcactacacc atacggaaag tcatgaagaa ttgcagaggt       480
     ctgcacaatt taattcagga ggttcatcga tgcttctcat cgaaacggac cacttttagt       540
     agaacaaaat ttagtagagt tttcggggac tgactataaa aaccccaaaa ttcttgagga       600
     ggccagttag ttccagaatt agttccagtc agttccagcc agctcaactc cagtccagtt       660
     ccagttccag aagacgcccc tgaccagcca gacccgccag cagccaccag tagcagaggc       720
     cccagtccag ccggacttag cggtcggtgg aggccgcagt ccgccgggac ttagccgctg       780
     tgaagagtcc gccgggactt agccgccgtg aagagtccgc cgggacttag ccgctgtgaa       840
     gagtccgccg ggacttagcc gccgtgaaga gtccacccgg gacttaggag ttcggggtct       900
     ggcatggctc ggcgaagagg tctggaggac aagtctggct tcaacataga gaactggctc       960
     gacgaagatc ttaatgcaaa gtgatgtgat cgtgtgcgta aaagttgaaa gtgttaccgc      1020
     aaaaatgtaa tctttaaaaa gtgtaatata cagataagtg aagtttactg atctgttttg      1080
     actctacgag taaatatcac aaaaatcctg aaagcctaaa ccgctcgggc cgttca          1136
//
ID   Gypsy-57_DEl-I repbase;    DNA;    INV; 4316 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.04, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_DEl_;
KW   Gypsy-57_DEl-LTR; Gypsy-57_DEl-I.
XX
NM   Gypsy-57_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4316
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 549-549 (2012).
XX
RN   [2]
RP   1-4316
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1198
FT                 /product="Gypsy-57_DEl-I_1p"
FT                 /translation="MPGEPRYNLRSLVPRKLIFESDENMPDEQQQLQTRIR
FT                 ELQAQVEALQMNSTAGQAANTGPMARATVHLPKFTSSNPQLWFAQVERSFR
FT                 LHGVNNDDDKFDHITVNLDPEVVLAVEDLVTHPPVANKFDTLKARLLDKFA
FT                 ESAESKLRRLLQGGGTSGLKPSQILAHMRRLAPESSSEPIIRTLFLSEMPQ
FT                 NIRPILTVWEETDLEKLAKVADKMLETIGSSNTFAISADDVAGTASVNAVA
FT                 RPESIKDIADSLRALTKKVDTMQADLKRIQSSNRSTSQTRGSFHRSASQQR
FT                 SQSATVSDGPLQQPGDPQAEPCYYHRRFGNDARKCKSPCSLAHLLN"
FT   CDS           1153..4290
FT                 /product="Gypsy-57_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="CSQVQISLLSCAPFKLMPLSPSSLEGGSTTNASEKLV
FT                 QSAILSEVRLYITDRNSHQRFLIDSGSVVSVVPRPRARHHTKQTDLVLYAA
FT                 NGTVIHTYGSMPVDLNIGLRRNLIWPFIVADTEVAIIGADFLSHFHLLVDV
FT                 KGQKLIDANTNLSTPACLSNAVHHSVSTIQGAHRFQTLLQEFVDVTVPAPK
FT                 GSNHQDIQHYIETTGSPVSDRPRRLSGEKLLTAKSEINFLLKEGICRPSKS
FT                 QWSSPLHMVSKKDGSWRSCGDYRKLNAITVPDRYPIAHIHDFSEQLHGKKI
FT                 FSTLDLVKAYYQIPMAECDIPKTAVCTPFGLIEFLYMPFGLKNATQTFQRF
FT                 IDNIFRGIDFVYCYIDDILIMSSSLEEHEKHLRTVMEILRNHGLRINISKC
FT                 QLAQIEVNFLSYTINEHGIKPPSNRVEAIKNYTRPSTINELGRFLGIINYY
FT                 RRCLPRSSHIQAPLSELLRNVKKNDQRPIEWTPERVAAYDSCKQSVMDAVL
FT                 LAHPFPKAQLALVCDASDVAIGAALEQLVNGHWQPLGFFSKKLTDTEKNYS
FT                 TYDRELLSIYEAIKYFKHCLEGRIFCIKTDHKPLVYAFRQRPEKASPRQLR
FT                 HLGYISQFTTEIIHVKGSENVVADAFSRLCAITMPVSVSLKQIEEAQATDT
FT                 ELPNLLQGTTSLQLQKIRYDDNIALYCDISTNYVRPYVPTALRNKIFSFFH
FT                 SLSHPSGRSTLQQIKQKFVWPEMRKNVIEWCRTCLSCQRAKISRHNHLTPE
FT                 KITVPSDRFNHVHLDIVIMPFHQNFRYCLTMIDRFTRWPEAVPLTNISADT
FT                 VAKAFWSQWVARFGTPKTITTDQGTQFESALFKELAHLMGSEHIHTTAYHP
FT                 QSNGMVERWHRSFKAAMMCHSSTPWPELLPIVLLGLRTCLKEDLKSSAAEM
FT                 LYGTTIRMPNEFFEDLDVNVDPATFIGDFRDLMRKIRPTPSAHHSKQKMFR
FT                 LKEIDKCSHVFIRTDAVKLPLEPPYSGPFEVVYRNSDRVFTLNVNGKEVAV
FT                 SVDRIKPAFLAKTDTQQDAQPEIAVQPRTYQNKRVQFNVS"
XX
SQ   Sequence 4316 BP; 1245 A; 1115 C; 888 G; 1068 T; 0 other;
     gtggtgaccc cgatagtaga tttcagctaa gtatatggca aaaatctttt taattgagcc        60
     aaactgtcgc aaaattaaaa atttgcccac actgagtttt atgcacttac acatgcaaac       120
     attttgcaac ggagacacat acatatagtc acaaaaagtg acgctaccaa cacaacgaaa       180
     gtttatgccc ggcgaacctc gatataactt gcgatcctta gtacccagaa agctaatctt       240
     cgagagcgac gagaacatgc ccgacgagca acaacaactg caaaccagga ttcgagagct       300
     tcaagctcag gtggaggctt tacaaatgaa ttctactgca ggacaagcgg cgaacactgg       360
     accaatggca cgggcaacag tccacttgcc aaagtttaca agcagcaatc ctcaactatg       420
     gttcgcccag gtggaacgtt catttcgttt gcacggcgtt aacaatgacg acgacaaatt       480
     tgatcacatc accgttaact tggatccgga ggtcgtttta gccgtcgagg atttagtcac       540
     gcatcctcca gtcgcaaaca agtttgacac gctgaaagct cgcttgctcg acaaatttgc       600
     agagtcagca gaatcaaaac tacggcgttt actgcaaggt ggaggaactt ctggcctgaa       660
     gccctcccag attctagctc acatgcgtcg gctggcaccg gaatccagca gcgaaccaat       720
     aatccgtaca ttgtttcttt ctgaaatgcc tcagaatatt cgtccgattt taaccgtctg       780
     ggaagagacc gaccttgaga aactggccaa agtggcagac aaaatgcttg aaaccatcgg       840
     atcttccaac acgttcgcca tctctgcaga tgacgtagcc ggaaccgctt cggtgaatgc       900
     agttgctcgt ccggaatcta tcaaggacat cgcagactct ctgcgtgcgc tgacaaaaaa       960
     ggttgatacg atgcaagctg accttaagcg aattcaatcg agtaatcgtt ccaccagtca      1020
     aactcgtgga tcatttcacc gatccgcttc acaacaacgc tctcaatcgg caacagtttc      1080
     tgatggtcca ttacaacaac ctggcgatcc acaagctgaa ccttgctatt atcatcgtcg      1140
     ttttggaaat gatgctcgca agtgcaaatc tccttgctct cttgcgcacc ttttaaacta      1200
     atgccgctgt caccttcatc gctggagggt ggcagtacaa ccaacgccag cgaaaagctc      1260
     gtccagtcag caatcttatc tgaagtccgt ctttacatta ccgaccgcaa ctcccaccaa      1320
     agattcctta tcgactcggg ctccgtggtt tctgttgttc cccgcccacg ggcaaggcat      1380
     cacacaaaac aaaccgacct tgtcttatat gcagcaaacg gaacagtcat ccacacctac      1440
     ggaagcatgc cagttgacct gaacattggg ctacggcgta accttatctg gccttttatc      1500
     gttgctgaca ccgaagtagc tataattggt gcagactttc tgtcccactt tcatctcctc      1560
     gtcgacgtaa agggccaaaa actcatcgat gcgaacacca atctatcgac accagcttgt      1620
     ctttccaacg ctgtacatca ctctgtgtct accattcaag gtgcacacag attccaaact      1680
     ctgttgcagg aatttgtgga cgttactgtt ccagcaccga agggaagcaa tcatcaggat      1740
     atacaacact acattgagac tacaggaagc ccagtctccg atcgtccgcg ccgtctatct      1800
     ggtgagaaac ttttaaccgc aaagtcagaa atcaacttct tgcttaaaga gggcatttgt      1860
     cgtccttcta aaagccagtg gtcaagcccg ctacatatgg tgagcaaaaa agatggaagt      1920
     tggcgatctt gtggggacta tcgcaaactc aacgcgataa cggtacctga ccgttatcca      1980
     attgctcata tccacgattt ctcggagcaa ctacacggga aaaagatctt ttctactctc      2040
     gacctagtaa aagcgtatta tcagattcca atggctgagt gtgacatccc taaaaccgct      2100
     gtttgtacac cttttggcct tattgaattc ctctatatgc cgttcggcct taaaaacgct      2160
     acacagactt tccaaaggtt tatagataac attttccgtg gcatcgattt cgtttattgt      2220
     tacattgacg atattctgat aatgtccagt tcccttgagg aacacgaaaa acatctgcgt      2280
     accgttatgg agatccttcg taaccacgga cttcgcataa acataagcaa gtgtcaattg      2340
     gcccagatag aggtgaattt tctaagctat accattaacg agcacggaat caaacctcct      2400
     agtaatcggg tagaggcaat aaaaaactat acgaggcctt ctacaatcaa cgaactagga      2460
     agattcctcg gcataataaa ttattatcgg agatgcctgc ctcgttcgtc acacatccag      2520
     gctcctcttt cagaacttct taggaacgtc aagaaaaacg accaacgccc gatcgaatgg      2580
     acaccagaac gagttgccgc ttacgattct tgtaaacaaa gcgtcatgga tgcggtacta      2640
     ctggctcatc cctttccaaa agcacaactg gctctcgtat gtgatgcttc tgatgtcgca      2700
     atcggagctg cactagaaca gctggtcaat ggtcattggc agcctcttgg ttttttctca      2760
     aaaaaattaa ccgacactga gaaaaattac agcacatacg atagagagtt gctctccatt      2820
     tatgaagcca tcaagtattt caagcactgc cttgaaggtc gaatattttg cattaagaca      2880
     gaccacaagc ctctcgtgta tgcatttagg caacggcctg aaaaagcgtc acccaggcaa      2940
     cttcgtcatc ttggctacat ttcgcagttc acgaccgaga tcatacatgt caagggatct      3000
     gaaaacgtag tcgcggatgc attttccaga ctatgtgcta ttaccatgcc agtctctgtc      3060
     agcctaaagc aaatcgagga agcgcaggca accgatactg agctcccaaa cttactgcaa      3120
     ggaactactt cgcttcagct gcaaaaaata cgctacgatg acaacatcgc actttactgc      3180
     gacatatcaa caaattacgt tcgtccttat gtacccactg ctcttcgcaa taaaatattc      3240
     tctttctttc acagcctctc acatccgagc ggcagatcca ctctgcaaca aattaagcaa      3300
     aaatttgtat ggccggaaat gaggaaaaac gtcattgagt ggtgcaggac ttgtctttct      3360
     tgtcaacgtg ccaagataag caggcataat catctgactc cagaaaagat cacagttccc      3420
     agcgacagat tcaaccatgt tcatctggac atcgtcatca tgccgttcca tcaaaacttt      3480
     cggtactgcc ttaccatgat agacagattt actcgctggc cggaggctgt ccctcttaca      3540
     aacatatcgg ctgatacggt ggctaaagct ttttggtcac aatgggttgc tcgttttgga      3600
     acacctaaaa caataacaac tgaccaaggc actcaattcg aatcagcgct gttcaaggag      3660
     ctggcccacc tcatgggcag cgaacacatc cacacgactg cttatcaccc ccagtccaac      3720
     ggaatggtcg aaagatggca cagatcattt aaggctgcga tgatgtgcca ttcaagcacc      3780
     ccttggccgg aactgctacc catcgttctg ctaggacttc gtacctgttt aaaagaggac      3840
     cttaaatcat cggctgcgga gatgctatat ggaacaacaa tccgcatgcc gaatgaattt      3900
     tttgaagatc tcgatgtaaa cgtggatcct gcaaccttca ttggcgattt tcgtgacctg      3960
     atgcgaaaga ttcgtccgac tccttctgcg caccacagca agcaaaaaat gttccgccta      4020
     aaagaaatag acaaatgctc tcatgtattt attcggaccg atgccgtcaa actaccattg      4080
     gaaccgcctt attcaggacc ttttgaagtc gtttatcgca acagcgaccg agttttcaca      4140
     ttaaatgtca acggcaagga agtagctgtc tccgtggatc gaataaaacc ggcctttcta      4200
     gctaagaccg acacacagca ggatgctcaa cctgagatcg ctgtacagcc acgaacctat      4260
     cagaacaagc gagtacaatt taacgtatcg tgacgtcgtc actggagagg gagtac          4316
//
ID   Gypsy-57_DEl-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.04, Created)
DT   23-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_DEl_;
KW   Gypsy-57_DEl-LTR; Gypsy-57_DEl-I.
XX
NM   Gypsy-57_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-224
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 550-550 (2012).
XX
RN   [2]
RP   1-224
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 224 BP; 68 A; 53 C; 33 G; 69 T; 1 other;
     tgtggcggcc caagttaaaa taccatctag cggaaaagct gttaactaag aacttagcta        60
     cgatatttat tgttatcttt ttgatcgata tgttctaaga aacacatctc tgtctctctc       120
     ttcttccggc tctcggctaa gctgcacgca cgctttgtaa ctcctcattg taaacccaaa       180
     catacatcaa taaaataata gtaacaccaa tmcgtgttac cata                        224
//
ID   Gypsy-57_DWil-I repbase;    DNA;    INV; 6293 BP.
XX
AC   .
XX
DT   12-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_DWil_;
KW   Gypsy-57_DWil-LTR; Gypsy-57_DWil-I.
XX
NM   Gypsy-57_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6293
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1883-1883 (2012).
XX
RN   [3]
RP   1-6293
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1208..2416
FT                 /product="Gypsy-57_DWil-I_1p"
FT                 /translation="MEWNNLVKNLNNSRDKFNRSYNCINKDTVIRIETLKL
FT                 HINNLIQQYNNIVLKIQLVDDQLTPAHKTQCYNLIQSLNERLTKISARRSL
FT                 EIQIPEEPLALAEFDANQLSELNESKPTVDIEQDSDIESLFEEIIPTKMAL
FT                 TVVDFLKLASSLISDYDGKPENLQSFLDSLNLVNTLKGDHEQTAISLIKTK
FT                 LKGHARNLITTEQTIGEIITHLSTTVKGESVEVVSAKLLNLQQRNKTATQY
FT                 TQEVEKLAKDLEGAYISDGVTPTLATKYSTVTAVKAMTKNCTIERVKNIMM
FT                 GGIFTNMDDAVSKFVNTCTEITGQSNSVLYYRRGTSYNNRGGRGYNRGRNY
FT                 NYNNNSNNNNNFHNNNNRGGRRGQNRGRGRGNFNRGYNTGNVRLLQNTSEN
FT                 QQNPLGNTQ"
FT   CDS           2359..6027
FT                 /product="Gypsy-57_DWil-I_2p"
FT                 /translation="CQIITEYIGKPTEPFRQHTINPKIYTINLSLNIFVCF
FT                 TNHETNTNLTFLVDTGADISLLKINSDNYNIKDNKIIDIEGIGQGIIQSKG
FT                 ITAIEIQTAKYIIPHEFHLVDPDFAIPCDGIIGIDFIKKFNCQLDFNPTED
FT                 WLIIRPNNLNYPIYVPITYSSGNNALLLPARSQVVRKIEINTEEECILIPN
FT                 QEIHNGIYVANTIATSKHVYVRLLNTTNSDQLVNVGKLKYETLSNYEIVRT
FT                 NPDIRCETVLNSLKKNFPPQFKEQLTKLCTKYSDVFGLETESISTNNFYTQ
FT                 TLRLRDDEPIYIKNYRSPHSQIEEIQKQVGKLINDKIVEPSVSEYNSPLLL
FT                 VPKKSNSEEKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCL
FT                 DLMSGFHQIELEESSRNVTSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIA
FT                 FSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTDVFNVCRRYNLKLHPEKCSF
FT                 FMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDADSARRFVAFCNYYRR
FT                 FIENFADHSRHITRLCKKNVPFEWTSECQNAFMHLKEKLMHPTLLQYPDFS
FT                 KEFCIITDASKQACGAVLTQNHSGLQLPIAYASRSFTKGESNKSTTEQELA
FT                 AIHWAITHFRPYIYGKHFTVKTDHRPLTYLFSMTNPSSKLTRMRLELEEYD
FT                 FTVEYLKGKDNFVADALSRITITDLKDIQHKVLKVTTRRQSRQEKNCTVKN
FT                 NELLPRQNHLNVSKPNVYEVIANDEVRKVVTLRITESKCFFKHGNKVIARI
FT                 EVSDIYTNGILDLGQLFQRLEKEAGILNIRQLKVAPSEKVFESISIDTFKQ
FT                 MGNKILRSLRVALLQPVTHLRNEKEIQQVLSTYHDDPIQGGHSGITRTISK
FT                 IKRHYYWKNMTRHIKEYVRKCQKCQVSKTTTHTKTPMTFTETPANAFDIVI
FT                 VDTIGPLPKSEHGNEYIVTLICDLTKYLVTIPIKNKSANNVAKAIFENFIL
FT                 KYGPMKTFISDMGTEYKNQVITDICKYMKIKNLTSTAYHHQTLGTIERSHR
FT                 TFNEYIRSYISADKSDWDDWIQYFTYCFNTTPSATHEYCPYELVFGRLPKQ
FT                 FIDFNKIDRIDPLYNLNDYAKEVKYRLEIAYKRARIMLEKAKAYRKDLYDK
FT                 TSKNFELSVGDKVLIRNEAGHKLDPVYLGPYIVEKIGDNQNIFIKDSKNKR
FT                 QKVHKDRLKIYIK"
XX
SQ   Sequence 6293 BP; 2547 A; 1126 C; 1029 G; 1590 T; 1 other;
     tggcgaccgt gacaggacct gtgtaaaaat ttaaaaaaaa aaaatattaa ttaaataaaa        60
     aaaaatatat aatacatacg aaaaaaaaca acagctaata attgatgcgg cgaaatatca       120
     gcaacagcag cagccaatta aggccacagt gtcggagaag gcaaatatgc ccacatgagt       180
     gacactggat ttggaaattc tgcacctgtc gtgcaagggg acgcgccaac actcgaggaa       240
     gcactcgagg cgtgtccagc cgatggaccc cgtcctctta ccatagagca atataaggcg       300
     aggactgcaa ggaaacagga aaaaccaaaa cataaacgaa gcggccggag gataaagcta       360
     ctacaacaga gacgtttaat gaaggacatg gtggaggcca ccaaagaaaa agaagaccga       420
     cagcgctaca tagagcgcct gcaacaaata aataacgagc ttcgccaagg tgcgaaacaa       480
     cggcaaacgg gctgcataat tgcagtagcc ccaatttgcc cttaatttta attatttata       540
     acaaatctat gcgggaaacc gctgtttaca aattactaaa aaaaaaaata ggcttgtact       600
     aacacatgtg gtagacatag atttaatcaa aattgtaaaa cttatgtaag tctaccacat       660
     gcccttaact cttttccttt tctctggctc actgcattac acagttgatg cacaaaaaaa       720
     aaaatcatct ctggctcact gtttaaacag ttgagatttc caaaattaaa aaaaaaaaaa       780
     tattaataaa aaaaaaatta ctaaatatca atacttatat ttgcataaaa ttgaaaaaga       840
     aatacaaaaa gagagcttac aatttttttt ttctcaaagt tcaaattcaa attttcaaat       900
     tttcccatga aactctcatt aaatgtatgg agtcgaactc catatcaaag ctagatagta       960
     cagaagaaag tattagaaaa ttagttagca tgttggacca tgagtccaag gtagcggatt      1020
     caaccgctaa tgttataaat actgtcgaaa catcttcaat cgacttaaaa tttataacaa      1080
     ttttattagt aataatcgtc gttttgctat tagcaaactc cctgacgaaa ctttataaat      1140
     tgcacaatag atgcatcaaa aagaaatacc aaagtagggc catagactta gacaagatct      1200
     aaaaaatatg gaatggaata atttagtaaa aaatctaaat aattccagag acaaatttaa      1260
     cagatcatat aattgtatca ataaagatac agttattaga atagaaactc taaaattaca      1320
     cataaataac cttattcaac aatataataa tattgtttta aaaattcaat tggtcgacga      1380
     ccagcttact cctgctcata aaacacagtg ctacaattta atacaatctt taaatgaaag      1440
     gttgacaaaa ataagcgcga gaagaagtct ggaaatacaa ataccagaag aaccattagc      1500
     tttagccgag ttcgatgcaa atcaactaag cgagctaaat gagtcaaagc caacagtcga      1560
     catcgaacaa gatagtgaca ttgaatcatt gttcgaagaa ataatcccta ctaaaatggc      1620
     actaacagtt gtagattttt tgaagctggc ctcaagtcta atatcagact atgacggtaa      1680
     gccagaaaat ttgcaaagtt tcctagattc tttgaatcta gtaaacacac taaaaggcga      1740
     ccatgagcaa acagccataa gcctgatcaa aacaaaatta aaaggccacg ccagaaattt      1800
     gataaccact gaacagacaa taggtgagat cattactcac ttgtctacaa cagtgaaggg      1860
     agagtcggta gaagtggtat cagctaagct tctcaatctc cagcaaagaa acaaaactgc      1920
     tactcaatac acccaagagg tggaaaagtt agcaaaggac cttgaaggtg cctacatcag      1980
     cgatggtgtg accccaactc ttgctaccaa gtatagcaca gtaacagcag taaaggcaat      2040
     gacgaaaaat tgcacaatag aaagggttaa gaacatcatg atgggaggta ttttcacaaa      2100
     tatggatgat gctgtatcca aatttgtaaa cacttgtact gagataacag gacaaagcaa      2160
     ttcagtccta tattatcgac gaggtacaag ttacaacaat agaggaggcc gaggttataa      2220
     tcgcggaaga aattataact ataataataa cagcaacaac aataacaact tccataataa      2280
     taataaccgt ggtggaagac gaggccagaa tagaggaaga ggccgaggaa acttcaaccg      2340
     aggttataat accggtaatg tcagattatt acagaataca tcggaaaacc aacagaaccc      2400
     tttaggcaac acacaataaa tccaaaaatt tacactatca accttagtct taacatattt      2460
     gtttgcttca caaatcacga aacaaacaca aatttaacat ttttagtaga tacaggagca      2520
     gatatatcac tcctaaaaat aaattcagat aattacaata tcaaagacaa taaaattata      2580
     gacattgaag gcataggcca aggaataatt caatccaaag gaatcacagc aatagaaatt      2640
     caaacagcca aatacataat tccacatgaa ttccatttag tagatcccga tttcgcaata      2700
     ccatgcgatg gaataatcgg cattgacttc ataaaaaaat tcaattgcca gttagacttc      2760
     aacccaaccg aagattggtt aataattaga ccaaacaacc taaattatcc gatttatgtt      2820
     ccgattacat atagttcagg caataatgca ctacttttac cagctagatc ccaagtggtc      2880
     cgaaaaatag aaataaacac agaagaagag tgcatattga taccaaatca agaaattcac      2940
     aatggaattt atgtcgctaa tacaatagca acgtccaaac atgtttacgt ccgtctgttg      3000
     aatacaacta attctgacca attggtcaat gtaggaaaac taaaatatga aacactttca      3060
     aattacgaaa ttgtccgaac aaacccagac atcagatgtg aaacagtttt gaatagctta      3120
     aagaaaaatt tcccccctca atttaaagaa cagttaacaa aattatgtac caaatatagc      3180
     gatgtattcg gactagaaac cgaatcgata tcaacaaaca atttctatac gcaaacatta      3240
     agactaaggg atgatgaacc tatttatatt aagaactata gaagtccgca tagccaaata      3300
     gaagaaatcc aaaaacaagt aggaaaatta ataaatgata aaatcgtaga accatctgta      3360
     tccgaataca atagcccact cttattagtc ccaaagaaat ctaactcaga agaaaagaaa      3420
     tggcgattag taattgacta tcgtcaaata aacaaaaaat tattgtccga taaatttccg      3480
     cttcccagaa ttgatgacat tctagaccaa ttgggtcgag ctaaatactt ctcctgcctc      3540
     gacctaatgt ccggttttca ccaaattgaa ctagaagaaa gttcaagaaa cgtaacatct      3600
     ttttcaacaa gcaatggctc atatcgcttc acgcgattgc catttggact taaaatagca      3660
     ccgaactctt tccagagaat gatgacaata gcattttcag gattggaacc ttcgcaggca      3720
     ttcctttata tggatgactt aatggtgata ggatgttccg aaaaacatat gattaaaaac      3780
     ttaactgatg tttttaacgt atgtaggaga tacaacctaa agttgcatcc agaaaaatgc      3840
     tcatttttta tgcatgaagt gacattccta ggtcacaaat gcactgataa aggagtcctg      3900
     cccgatgaca aaaaatacga tgtcataaaa aactatccgg ttccgcatga tgcagatagc      3960
     gcgaggcgat tcgtagcatt ttgtaattac taccgtcgtt tcatagaaaa cttcgccgac      4020
     cattcgcgac acataactag attatgcaaa aagaatgtcc cttttgaatg gacgagcgaa      4080
     tgccaaaacg catttatgca tcttaaagaa aagcttatgc atccaacact acttcaatat      4140
     cccgatttta gcaaagaatt ttgtataata actgatgcwa gtaaacaagc ttgtggagcg      4200
     gttctaactc agaaccatag tggacttcaa ctcccaatag cttatgcatc acgttcattt      4260
     acaaaaggcg aaagcaataa aagtacaaca gaacaagagt tagcagcaat tcattgggca      4320
     ataacacatt ttagaccata tatttatgga aaacatttta cagtaaaaac agatcacaga      4380
     ccactaacat atttattttc aatgacaaat ccaagttcca aattaacacg catgcggctg      4440
     gaacttgaag aatatgattt cacagtagaa tacctaaagg gaaaagataa ttttgttgcg      4500
     gatgcacttt cccgcataac aataaccgat ttaaaagaca ttcaacataa agtcctgaaa      4560
     gtcactacca ggcgacaaag tagacaagag aagaactgta cagttaaaaa caatgaactt      4620
     ttgccaaggc aaaatcattt aaatgtatcc aagcccaacg tgtacgaagt cattgcaaat      4680
     gatgaagtac gaaaagtagt gaccttgcgc atcacagaat ctaaatgttt ctttaagcat      4740
     ggaaataaag tgatcgcaag aattgaagtt agcgacatat atactaatgg aattctcgac      4800
     ttaggtcagc tcttccaaag gcttgaaaaa gaggccggta tattaaacat ccgccaactc      4860
     aaagtggcac cgagtgaaaa ggtctttgaa tcaatttcaa tagatacttt caaacaaatg      4920
     ggcaataaaa tattaagatc attacgagta gcgctactcc agccggtgac ccatttaaga      4980
     aatgagaaag agatacaaca agtactgtct acataccatg atgatccaat tcaaggaggt      5040
     catagtggca ttacaagaac aatatcgaaa atcaaaagac attactattg gaaaaatatg      5100
     acacgtcata taaaagagta cgtacgtaaa tgtcaaaaat gccaggtgtc taaaacaacg      5160
     acacatacaa aaactcctat gactttcact gaaacaccag caaacgcttt cgacatagtg      5220
     atagtggata caattggtcc actaccaaaa tcggagcatg gtaacgaata tatagtcaca      5280
     ttaatatgtg acctaacaaa atatttagta accataccga tcaaaaacaa aagtgcaaac      5340
     aatgtcgcaa aagcaatttt tgaaaacttt atactcaagt acggtccaat gaagacgttc      5400
     atttcggaca tgggaacaga gtataaaaac caagtaataa ctgatatatg caagtatatg      5460
     aagatcaaga atctcacctc tactgcatat caccaccaga ctttagggac aattgaacga      5520
     agtcatcgaa cattcaatga atacattcgt tcatatatct ctgcagataa gtctgattgg      5580
     gatgattgga ttcaatattt cacttattgt ttcaacacga caccatcagc aacacacgag      5640
     tattgtccat atgaactcgt atttggtaga ttgccaaaac agttcataga ttttaataaa      5700
     attgatagaa tagaccccct ttacaattta aatgattatg ctaaagaagt aaaatataga      5760
     ttagaaatag catataaaag agctagaatt atgttagaaa aagccaaggc ttataggaaa      5820
     gatttatatg ataaaaccag taaaaatttt gaattaagtg taggagataa agtattaata      5880
     agaaatgaag cagggcataa attagaccca gtatatttag gaccatatat agtagaaaaa      5940
     ataggagata atcaaaacat ttttataaaa gatagcaaga ataagagaca aaaagtacat      6000
     aaggatagat taaaaattta cattaaatga aacgtttcat gagaaaataa taaaaaaaaa      6060
     taattaggtc tgatcaacct tttcaaaaaa aaagaaagat ttttttaatt ttatataaat      6120
     ttttttttaa attttatgca aacaaaaaaa aaacaaaaca aacaaaaaaa aacatacaaa      6180
     gaaaaaagac aaaaaaaaaa acacttttta tccaaaaatt aattctcaaa agaaaaattt      6240
     ttttctctaa atgactacat atgtatatta cgtcatttct taaaaaaggg agg             6293
//
ID   Gypsy-57_DWil-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   12-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_DWil_;
KW   Gypsy-57_DWil-LTR; Gypsy-57_DWil-I.
XX
NM   Gypsy-57_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-438
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1884-1884 (2012).
XX
RN   [3]
RP   1-438
RA   Bao W.;
RT   "Sequence update.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 438 BP; 133 A; 112 C; 80 G; 113 T; 0 other;
     tgtagtgtat tcacatagtc gcctatcatt cacacctaaa gtatagctca acttgtaaca        60
     cttagttgca agcataaaca atcttcaatt gtttgtatat atgtatgtgc aggcatgcac       120
     atgcatacat actgattatg catatgcgta atatgagcta gggctaagag agcgtgtgac       180
     cgctgagtca gcactttggc cgcccagact gtgagcgtcc aactatgtga gtacactcgc       240
     tccgcacaca cccccccccc ccccccattc catttgtagc tgccgtccaa cggcagcata       300
     agaacagata taggctaaga actctttaac gaaataaagc aaaagcatta tcaaaactca       360
     cagctaaggg cacagacgtg ccgctgtttt tatttaaact ttataactaa tactcaaact       420
     cggaacccgg tcattaca                                                     438
//
ID   Gypsy-57_LMi-I repbase;    DNA;    INV; 3898 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3898
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 3898 BP; 1166 A; 934 C; 906 G; 891 T; 1 other;
     ttggtgacgc ccgactgaat ttcaagtata aaacgcaaac atggaaacac cgaatgtctc        60
     acgactagcg gtacgcctac ctcctttttg gccaagtagc ccaacgctct ggttcgcgca       120
     agtagaagcg agttttacgt atgccggaat aactgcagaa tcgacaaaat tcgcattggt       180
     ggtgagtcag ctcgaccagc aatatgcgac tgaagtaatg gacattataa cgaacccacc       240
     aacggaaaac gcgtacgagc gactaaagtc tgaactgata cgacgtttag ctgcatctca       300
     agaggacagg atcagacaag tattgactca agaggacatc ggcgacagaa agccatcgca       360
     gtatttacgc cacctcagga gcaaagtgga cgtcggcaca attccggata gctttctacg       420
     caccctgtgg agcagccgcc tgccacagca ggtaaaagca gtaatagctt cgcagagcga       480
     gatgtccttg gacgccgtgg cggatctcgc tgaccgcgtt ctggaggcga tcacgccaac       540
     tacacaggtt agtgcctaga cttgccacac accatagcca ccgtgacccc tactgtgaca       600
     cgtgaggatt atgatgcgct agccgccaaa gtggactttt tatgtgcgca aatatcatgt       660
     ttaatgtcac aaagcaacac gaatcggtat cgaggccaca gtcaatggcg taaacgtgca       720
     acgtcgctgc agtccgcatc aagataatca gaatactgtt ggtaccacag ccgctacagt       780
     gataaagcaa gaaatgtatt actcttgcaa ttacccaaac agaagcgcaa ttgccacgcc       840
     aagtcggggt ctgtttgtaa cagaagagtg ggacggagtt tttaatagat accgttccga       900
     cttagcattt tgccaaagag ttccaacatc gttgtgacca tgcacaaaat tcacttgagt       960
     gcagccaaca attgtgcaat gtagaaacac aacaagagtg cctaaactta ggactctata      1020
     tgggtttcat gtagctgacg tgaatgaagc cataatggtg caatttctcg gcgcatttca      1080
     actcttactg acgtagcaca cagcctcact gcctgacagc agcacgtttc tgccatgcca      1140
     cgaaaatcag tagcatcaag ctgatcaagt ggcggatgag gagtatcgca aaatttggct      1200
     ggttttctat gttaatcgaa ccgccgggag cgccacagaa agtattgcat gatacataca      1260
     ctatttagat tacggacgcc cgcctgtatc gtgccgagca agaagattac tccgaccgtc      1320
     tggcaattgt gaaggtggag tttgatataa tgttgaaaaa gggtattatt cgcccgccta      1380
     gtagtccatg ggcatttgtt gcatttagta ccgagaaagg tggcgcccag cgcgactaca      1440
     gagtgctgaa cgccagaccg ttatccagtc cgctgttgtg tggttataac catgcctgca      1500
     cggctagcgg tgtcagtgta ccagattcgc aaaacacata cgcaaatacc ggtagcaccc      1560
     gaagataacc caagatggca acaataacgc cttttggtct ttttgagagc aattcatgag      1620
     tttggtttgc aaaatgccca caacgtggaa aggtttgcag attcaattct gcggggactg      1680
     ccgcatgttt cgcctacctg gatgacattc ttgtaactcc acggacaaag aagcacaagc      1740
     agctcttaaa gaggtttcca gcgcttgaat tatggcattg tcttaaacac agctaaatgc      1800
     gtgttcggtc agcagagtcg aatttcttgg catagggtac tactgctggt tcagtaccat      1860
     tacctgcgaa attttaaagt ctgtagtgaa acctgacggt aaggaactcg gaagtacctc      1920
     gctctttatc ctgtaagcag tcttgcagat cctaaacgac ggttaaggaa ctgaagcacc      1980
     tcggcatgct taatttctac atacgacatc tgccacgaac agctgaacag caggcaccac      2040
     taaacgcatt gatagctggt cctaaggttc gcaatagcac acggattacc tggaacggca      2100
     aagccgaagc agtattcgag gtaacccgac aaagcctggc tcaagcagca ttattagcac      2160
     atcctaagtt agacktcgtg gacgccaacc agttctccaa caatgggtga atgattcatg      2220
     gcaaccttta gcatattatt cccataaatt gtcggcaacc agcaacaatg gagtgcctac      2280
     aacagggagt tactggcata tacaagcaat aaaacacttc cgacacaagt cgaagcttga      2340
     cttctgcatt tacacagacc acaagccatt gacgtacgtt tttaagaaga atagcgcaag      2400
     tgttcaccgc ggcaatactc gcagcttcaa tttattagcc aatttaccac tgatgtgcga      2460
     cacatttctg gattgtctaa agctgtagcc gattgcctgt ccagagttca agcatttcta      2520
     aacagtcaca atgccagctc tttgaagcac aacaggaaga ttctgaactg actaccctgt      2580
     tgaatgatga tcacgctgca ttgaaattgc agttgatgga tgtaccaggc gagaacacac      2640
     agatatactg tgaagtaagg aacagtaaat catgtcccta tgttccgcat acctaccgca      2700
     agaaggtttt tgacagtttg cacaacttgt gtcaccccgg cgtgcgagca acaattaaac      2760
     tagtgtctga acgtttcgtg tggcccggta ttgaacgaga ttgcaggaac tggaccagga      2820
     cttgcatacg ctgccagttg tgcaaagtca atcggcatgt gcacacaccg ataggagact      2880
     ttccagatgt caaaacaagg ttctcgcaca tccatctgga tgtagtaggt ccactgccac      2940
     cgtcggacgg aagtcgctat ctgttaacta taatcgacag attttcgcgc tggccagaag      3000
     ccataccagt tgaagacatc tcggcagaga ctttagcaaa ggcatttaca tcgacatggc      3060
     tatcaaggtt tggatgtccg ctgcacatca ccactgacag gggacgtcaa tttgagtcag      3120
     aactattcat gcagctggcc aagttctgca gttatacaca ccatcgtaca acagcttatc      3180
     accctgcaag caacggtatg gtggagagat ggcaccgcac cttaaaggcc gcactaatgt      3240
     gtcatgaaag caaatggacc gaagctttgc caatcgtgct gctgggccta cggtcgacat      3300
     ataaaaaaga tatagatgcg tcctcagcag agttagttta tggagaaaca atacgcttgc      3360
     cgggagaatt tgtggacgac acaggaacgt caaatgctat tgaccaacca gcattcctga      3420
     tgagattgag gaaaattgtg caagacatta aaccacatag agcctctaga cacggacatc      3480
     ctgccacatt catccacaag gacattaata catgctcaca tgtcttattg cgcacagacg      3540
     gcgtcaaacc gccattgcag ccaccatata cagggccgta tcgagtttta cgaagagaca      3600
     acagcacgat ggacattttg atgaatggaa aacaatcgac agtttcattg acagggttaa      3660
     gccggcatat attttttgcg aggcgaatga cccgacaact tggcagtaca gcaaaaaaga      3720
     aacaaaagtg aaatatcctg cgcaacaaaa aagaaaacaa caagaactgc aggaaaaaca      3780
     ggaaccaccg gaaaaaaacg agaaccacaa tgcaagacga ggtccggcag acatgtccat      3840
     tttcctgcta gatacagaga agacttgacg agctccgctc tcgccaaggg ggctcatg        3898
//
ID   Gypsy-57_LMi-LTR repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-302
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (22-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 302 BP; 75 A; 68 C; 70 G; 89 T; 0 other;
     tgtagcgacc gctacaatcg tttacggcag tcaaggcgcg cgcttttcgc gccaaccaca        60
     gaagttaatc gccgcagcag cgtcgggtcc agagagaaga cagacgatgc gcgcgtaacc       120
     ttaggttata tactccttgt ttgttccgtt gatatcaatg tgtatgatgt tgttgattga       180
     ttcttctgct tggcaactag ctttttctgt aagagtcaaa taataaatct gagaacgaac       240
     tccgctgatt tatttaatcg actgtgttcg gtattcgtga cgtttaacca cgaatcccga       300
     ca                                                                      302
//
ID   Gypsy-57_MSe-I repbase;    DNA;    INV; 4053 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4053
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 934-934 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
SQ   Sequence 4053 BP; 1241 A; 797 C; 891 G; 1110 T; 14 other;
     ttggcgacga gtacccacat tataaaaaaa waaaaaaaaa aatwgtaaaa tgaccttttg        60
     cggaattttg cctaatttcg accattgtat tcaagawtgg aagccgtgta aaaaccgaat       120
     catacaatgg ttcatagcga acaatattac ggatatatcg gaccctacag ggacgaagag       180
     gcgtgcwgtg ctactgacaa cactcacgga cgggacctac aagctcgctg cggatctcgc       240
     cttgcctaaa gagttgcagg aattgcccta tgaagacgtc atatcactct tagatgccca       300
     tttcacgcct aaacgaaatg ggtttggtga gcggcataaa ttccatacag cgacccagca       360
     accaggtgaa agtcaccagc aatgggcggc aaggcttcgg ggactatcgg cggactgtgg       420
     attcagtaac atagaagagg cgttacgaga tcgtttcgtc attgggttgc taataggtcc       480
     cgagagggat aagctgttcg ctcagtcaac ggagtcgtta accctggcga aagcagtgga       540
     aattgcagac agtgttcggt gcgctcgggc cggcgcgacc gcctcggcga ctaccggtca       600
     gcaagtcgat cagctgttca agattacgca aggtcgtaat cgcgaagatt gtagcggttc       660
     catcacggaa aattgtgcag tgtgtggtcg tacaaatcac aaaagtgctc agtgtcgttt       720
     tgctaaattt aaatgcaata agtgcaacaa aaaagggcat ttacgtaaaa tgtgcaaaaa       780
     tgtgaatcac atgggggtag ttgatgtgga tgcaggcgac gatggtaagt gttataatat       840
     tcggacattg cgcggcgagc ccatgacggt atgcgtgttt gtaggcaata taggtattca       900
     atttgaaatt gacagcggat ccgcggtaac cgtcattaat gaaaacactt ataaaagata       960
     ttttagtaat tttaaagttt cgaaatccga taaacaactt ctatcwtaca caggtaacca      1020
     aatgaaatct attggggtca ttcagttacc aataacgtac ttgcgggaaa ckcataaact      1080
     cgaagtgtat gttgtccgcg acggcgggcc accgttatta ggcagggact ttttatcatt      1140
     atttaagttg cagttgttac cgtgtaattt ccttaacact tccattacag tagtcaacga      1200
     actccaaacc caattccctc aattattttc agacaagcta gggaaattta ataaatacca      1260
     agtgaaatta caattaaaag ataacgccaa accggttttc tttaaagccc gtcccatcgc      1320
     atttgcgctg cgggataaaa tagacataga aattgatagg ttagtcggct taggaatctt      1380
     aaagcctaca gaccacgcag agtatgcatc acccatagtc cctgtgttga agcggaatgg      1440
     ttcgattagg ctgtgtgtag attattcatg ttctataaac aagcatttaa ttgtagaaca      1500
     atacccgctg ccaaccatcc atgagttgtt ttctaaattg cacggaggct tacaattttc      1560
     aaaattagac ctttctatgg cctacaatca atttgtgcta gacgaggagt cgcaacgttt      1620
     gacctgtatt aatacccacc gcggattatt taagtacacg cgcatggtat ttggtttagc      1680
     gagcgcgcct gctatctttc aaaaggcgat ggatacgatt ttatccgggt tggacggagt      1740
     gttatgtttg cttgacgaca ttttagtaac agccgatagt actgaattgc atttaaaaag      1800
     actgcaaata gttctacaaa gactgcaaaa tgcgggtctg gtgttacaga aagaaaaatg      1860
     tgttttcttt caaaatgaaa tcagttatct agggtatgtg atagatagac atggtctgaa      1920
     gaaatccggc gataaagtta aagcgatatt agatgccccg gcgccaagcg atatacataa      1980
     gttgcaatca tttttagggc ttgttaacta ttaccgaaac tttgttccca gcgcttcaag      2040
     tatacttagt cccttatatg acctgctgaa aaaaggaacc aaatggtctt ggcataaatt      2100
     acataatgat gctttttgca ggataaaatc catactggcg tcggatcaag tactggctca      2160
     ttacgatcct gacgcgcaaa ttattttgac ggtcgatgca tccccgtatg ggttaggtgc      2220
     aatcttgtcg caataatgcg aggatggtac agaacggcct atttcgttcg cttctcggac      2280
     attaaacgcg gccgagaaac gatattcgca aattcaaaaa gaagccacag maattatctt      2340
     cggggtgaga cgatttcacc agtatttata tggcagatcc cgcccatttg ttttaagaac      2400
     ggatcataaa ccgcttattg ttatattcgg gccatatcgg ggtataccag agatatcagc      2460
     gaaccgtcta caaaggtacg caatgttcct tagcgcatat aactatacaa ttgaatatat      2520
     acgtagcgga aacaactgtg ctgatttttt gtctcgtgct tacttgcctg tcactggtac      2580
     actatctcag gcgacctccg tgcataggga kgaaagaata catkgtgccg atatcgaaga      2640
     tcgcgcgtca tatgttaatt tcgtaatcga cggaacctca ctgattacca tagaagttct      2700
     acgggacgaa accaagaaag atatggtttt gaataaagtt attaaatata tttcaaaggg      2760
     ctggccaaaa aaagtaggta gcttgcaaat taaaccttat cacatgtgcc gaacgcagct      2820
     ttcctgtgaa aatggctgtg tgatgcgtgg gcataaaata gtaattccgg agaggcwtcs      2880
     tcacaaaatc ttagcggagc tccataagtc acacttaggg attgtaaaaa actaaagcgg      2940
     aggcccggtc gcgtttttgg tttcccggga tagatagtga aatagaaaaa atkattggcg      3000
     catgtagtat atgcactcaa ttgcgtccga cgccaccccg cgcccctttg gccccctggc      3060
     ctttccctcc ccaacccttt tatcgtgttc atatagattt gctgggccct ataaacaatc      3120
     gcaactacct agtcattgtt gatgcatact ctaagtgggt ggaagtttac gatatgggta      3180
     acacgactac ttcwwattcc gtactcgaca aaatatacga ctttatgtcg cgttttggtg      3240
     tgccacatac aatagtcagt gataatgggc tggctttcgt gtcacaagaa tttcaaaagt      3300
     tttgtttatc caatggaatt tcacacataa cgtcaccagc atatcatccc gctagcaacg      3360
     gccaagccga aagctacgtg aaaattgtca aaaaaggtat taaatgtagt cttttaagta      3420
     caaacagcag cagggatggc aaacgtatgt tactaaaata tctttttgac taccggaatt      3480
     caatacattc ggttaccggg gtttcaccgt ctcaacttgt ttttggaaaa aacctccgat      3540
     cacatttaga tttgattaac cctataaaaa cagcgtcgcc ggcttccaca tcgcttactc      3600
     ataatgtgaa atctaaacag tgtttacaga gtagaaatta tggcgggaaa aataatcaaa      3660
     ctttcgttag tggggatcaa atattgtata aaaaatttaa aaacatgaat acattttgtt      3720
     ggcgtaatgg tacagtttta aaacgcttag gtaaagttat gtacctagtg aaagacaatt      3780
     tgtcactcgc acatataaag aaacacaaaa atcaattagt actatataga tgtggtattg      3840
     aaatgtgtga tcgcatttcc aaacctgagt acgttgactt acaagacggg aacgacgtgg      3900
     aggacggaag caacgtcctc aagacatacg tctaggctct tgcggaatat tccgacaata      3960
     gattataaga gatttttcta ggggtattag atagtaatat tatattgtag ttaatatagt      4020
     aaattgaagt ttcgggaact gttggggagg gaa                                   4053
//
ID   Gypsy-57_MSe-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-122
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 983-983 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 122 BP; 24 A; 31 C; 26 G; 41 T; 0 other;
     tgtggtgtat gtacctacgt attgtagtta tgtggctgcg ccccgctcct actgtcatgc        60
     attaaacagt ttgtcattag caagcaatcg tttcacttgt ctctccgttc ggctacgcaa       120
     ca                                                                      122
//
ID   Gypsy-57_SiCu-I repbase;    DNA;    INV; 7570 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-7570
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5077-5077 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           713..3778
FT                 /product="Gypsy-57_SiCu-I_1p"
FT                 /translation="MSGKPPQPPKHTRSKGEPEPTEIPLFVDKSAKQRVTN
FT                 VHRQLSVLQATPSFVAPQFRAHPSPIRPSYLAVALQNRLPTPDHSILDSSQ
FT                 YSYFNSTTVDQANIPVASTSKPPDPTVHTSVARAPTPPASLDPSNEEVVFR
FT                 RSSIILRSPVHSPSKQRKSSSDPGSEQDELMILESAPAASSSTGTLTQVDN
FT                 DAFKSEGQLARTNPFDDLSSSLGAELDTLQVRFSENPTIIPTTGSAPLPED
FT                 EPFVVTRVHLEKEITNLERPIVENAKHLFDNISKAATDKRLEFLAAQKQLV
FT                 IHRSQLNHSIREQRAKRREVESNIKDSKRKRTEAQLDLTQSQLNLSAEDIE
FT                 ASELRLTDINRQIAILSNSKQEANDELIRLTKLKENINDRVVEIQKQQQDY
FT                 QKLIERQANEFISEEVSKQKERIKREVQEFYEKQFQTQTIDLSKEYQNKLY
FT                 QAHINLEAHLGTQLKNTLKGIVVKHEQEIHAFKQSEKELTDEIARINQEVI
FT                 IRENLLAASKQREERLIEKARQSQQSADRLRQQRDHLQGQNQAFIASTIPN
FT                 TIRPVTTVTSTISTPITTAQPSGYSPMHTTGFYQTPITTPVVTTVIISTGT
FT                 TATTTTTTAGSSSTFSFGAFTTASTHTSGSYTFGASSAASTHTGGPYFSSF
FT                 RSSTSSGTPPLTMSAAALLMMAGDRVEKYTGKGSFEEWLKDFNDACTTYVL
FT                 NDAQKMSYLSSMLKDSAKVAYRRFIHGSPSIDYPTMCMKLKSAFQSKVSRE
FT                 EYRRLLEERKITSRDSYEDYYFSILELCRKAHITDDADIVNYLIKGLPARL
FT                 GKEIYNSGPLNPEDVYEKMVRASKFDSLLGKGAYMQDEEMNVIIDTVAEKL
FT                 QNTKLGQNTKNEANFVQTKRGKFRGSNRGNFNRGNFRGNRGNYNNGNRGYY
FT                 RNNYRNRGNYNNYGRGRYNNAPQGNYGNFNGNYNGYRGNNNNYNGNYNNRG
FT                 NNYRGNSYRGNNYRGRGRGFRGGPRNQYDNRGNNDNYQNQNRNNNAYANTA
FT                 QASQDEGPNVRYNPEN"
FT   CDS           3757..7491
FT                 /product="Gypsy-57_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="CALQPGKLNTVIGIDECPVTVNLAYTNLVMMHLYINR
FT                 KKVLALIDTGATASIIPPNLVTNMTLKKHSVYINGINGKGMALGKIELPFA
FT                 FPDTNEELYFPFLVYPVTRPIIGNDILSRLSLKIEFPSRSIQYKQFQLPFY
FT                 LHSQEINSIETPPSTKVKVSKRVIIPSNSYMKVQAYNPNDSVYFEPSDVLM
FT                 LYHNLLLPQIYLPKQGNVEIPILNPNAYPVQLNSHTTLGEVQGLVEIHHTN
FT                 YILCNKEKQPTANSNSEFDINKELGSNQKLQLANLLEEYTMIFSKSDDDIG
FT                 NYPGPERMSIDTGDSEPINLPPYRKSHTERKIIRDYIQKFLKAGIIEESNS
FT                 DYASPILLIRKKDEGWRICIDYRFLNDVTKTQNYPMPRLQDIFDSLYNAKF
FT                 FSKMDIAQGYFHFCLDEKDKHKSAFITQDGLYQFNRIPQGMKNSPSFFNRV
FT                 LRKIFSNLLYKHTFLYLDDILCYSKTFDEHVKALKDVFEKLRLNGIKLKPS
FT                 KCSFGYNEIRILGHVLNKDGVKVDPSKVSAVVKMPIPQNVSEVRTVMGMFS
FT                 YYRKFIKNFAIIARPLVMLTKKNHPFDWTRACQSSFDILKNKLITAPILAQ
FT                 FKEDSDVILYADASLYGIGCVLTQIQDGKEKVIAYASRALNPAEIKYSIAA
FT                 RECLAVIFGLNRFSEYCHGRHCTVISDHHSLCSLLRTKNSKNLRIARWALE
FT                 VQQADITVKYRKGSLHGNADCLSRCIPLSAPAKGFESVFPVTVKSKPTMSK
FT                 VKQDLDYRSQLKINQRKDKFYNQIFTILENNMPIPDKFKHFKIIDDTLYYV
FT                 DQFSEIKKLCIPTSMVNDILFAHHDNYLGGGHLGVKRTVNTIKIKYYFPNM
FT                 ANMIAKYVSNCQKCAERQPATQPKIGRMQPGEIYDIFQKWQCDAIGPLTES
FT                 ARGNKYILAAIDTMSKYVVTRPVREVNSTTLAKFLIEEIFLRFSVPKEIQF
FT                 DNSSVNRAKLIDELMKKVNCTPKFITPFQHKSSGQIERLNRTLEEMISKII
FT                 DKTQQDWDLALSITTFNYNTTVHSTTKYSPHLLVYGTMPTIPLDIALDPQA
FT                 NNYYGNIDKIRLHAKQNSLISQNNSAEKYNKTRVEKKLLPGMMIMLLRHVF
FT                 TPGLSKKLQSKYFGPYKIVRQINDLHYKVKNMSLIKRKKKFEIVHIDRIKR
FT                 IGDDILEANNDIQLTAPSLITPVQDSQKVTYPLRQTDQDTVPPPTYQKSLR
FT                 SPDAHNKNTITVTTRSGRTTSRPTSYKLTRDKRSN"
XX
SQ   Sequence 7570 BP; 2596 A; 1345 C; 1336 G; 2293 T; 0 other;
     tggtgactgc ctcagttttc tccagcggag cggagagttt ttgtgaataa tatttgtgga        60
     atctctgggt cgaatcctca gttacaaaat tcacagtttt agctagttat tttgggctgc       120
     cttttattta tttttgtgtg aagtgagagt ttcgaaattg attctgattt tatttgcctc       180
     aacttttgta gtaacgttta gctaggatat tttatttttg tgttccagac ctggactaag       240
     tgacacagga atcatcaaaa cgataagcca tacaaaaatt tatatatttt tgccatatgt       300
     tgtttgcctt tgatttttat tttgcctcaa gccacaaatt attatcatca tcatcgtcaa       360
     cagcatccac ctcagcattg tagagaaaaa gagagagtga gtgcatacaa gtgcatagaa       420
     aacgtcatat aaaggtgtca ggtagactat agttatttca catccatata tataggtatc       480
     atttaactgg tttcttttgg tttaacatgt gcggtaaatg actatctcgt tgactattgc       540
     gaattttaat attctgacgt cagtttaggt attaaaaatt ttgccattta ggtatcggta       600
     gcatttgata atttatagta tagtatggtt tgtctgtctg tccgtcatga atttttaatt       660
     tttcgacttt gttatatttt attgcatccg tattacagca tcatagatac acatgtctgg       720
     taagccgcct cagccaccaa agcatacacg tagtaaaggt gagcctgagc caactgagat       780
     cccacttttt gttgataaat ctgccaagca aagagtgacc aacgtacata ggcagctaag       840
     tgttttgcaa gcaactcctt cttttgttgc tcctcagttt cgtgctcatc cgtctcctat       900
     tcgaccaagc tatcttgctg ttgcattaca aaatcgtttg ccaacaccag atcactccat       960
     tctagatagt tcgcaatata gttattttaa ttctaccacc gtggatcaag ctaatattcc      1020
     agtagcctca acatccaaac caccagatcc tactgtacat actagtgtgg cccgtgcacc      1080
     cacaccgcct gctagtttag atcctagtaa cgaagaagta gtttttagaa gatccagcat      1140
     aatacttaga tctcctgtgc attctccttc taaacaacgg aaatccagct cagatccggg      1200
     ttcagaacaa gatgaactta tgatattaga aagtgcacct gctgcttcta gtagcactgg      1260
     aactttaacg caagtagata acgacgcatt taaaagtgaa ggccaattag ccagaactaa      1320
     cccatttgat gatttatcct cctcattagg agcagaatta gatacattgc aagtacgttt      1380
     ttctgaaaat cccacaataa ttccaactac tggtagtgca ccacttcctg aagatgaacc      1440
     ttttgttgtt acgcgagttc atttagaaaa agaaatcacc aatcttgaga gacctattgt      1500
     agaaaacgca aaacatttat ttgataatat ttctaaagct gctactgaca aacgactaga      1560
     attcttagcc gcccaaaaac aattagtcat tcataggagt caattaaatc atagcatccg      1620
     agaacaacga gctaagcgaa gagaagttga aagcaacatc aaggatagta aacgtaagcg      1680
     tactgaagct caacttgatt tgacgcagtc tcagcttaat ttatctgctg aagatataga      1740
     ggcttctgaa ctccgactta ccgatattaa ccgtcagata gcaattcttt cgaattctaa      1800
     acaagaagcg aatgacgaat taattcgttt aactaaactg aaggaaaaca ttaatgatcg      1860
     tgtagtggag atacaaaagc aacaacagga ctatcaaaaa cttatagaac gccaagccaa      1920
     tgaatttata agtgaagaag tgtctaaaca aaaggaacgt attaagagag aggttcaaga      1980
     gttttatgaa aaacaatttc agactcagac aatcgattta tctaaagaat atcagaataa      2040
     attatatcaa gctcacatca atttagaagc gcatctgggc actcagttaa aaaatacatt      2100
     aaaaggaatt gtagtaaaac acgaacaaga aatccacgca tttaagcaaa gcgagaaaga      2160
     gctgactgac gaaatcgccc ggattaatca agaggtcatt atacgagaga acttattagc      2220
     tgcatcaaag caaagagaag agcgtttaat tgaaaaggca cgacaatccc agcagagcgc      2280
     agaccgactt cgtcaacagc gagatcattt acaaggacag aatcaagctt ttattgcgag      2340
     taccataccc aataccatac gtcccgttac aactgtaact agtacaatca gtactccgat      2400
     tactacagcc caaccttcgg gatactctcc tatgcacaca acaggatttt atcaaactcc      2460
     tataacaact ccagtagtca ctactgttat tatctcaacg ggaactactg ctactacaac      2520
     aacaactacc gctgggagta gctcaacatt ttcttttggt gcattcacaa cggctagtac      2580
     acatacgtca ggttcatata ccttcggagc atcctctgca gctagtactc atacaggggg      2640
     accatatttt agttctttta gatcctccac atcttccggt actccaccgt taaccatgtc      2700
     tgccgccgct ttattaatga tggctggtga tagagtagaa aaatacactg gaaaaggaag      2760
     ttttgaagaa tggcttaaag atttcaatga tgcttgcacc acctacgtgc taaacgatgc      2820
     tcagaaaatg tcgtatttat cgtctatgtt gaaagactct gccaaagtgg catatcgtcg      2880
     tttcattcac ggtagtccga gtattgacta ccctacaatg tgcatgaaac ttaaaagtgc      2940
     ttttcaatcc aaggtcagtc gagaagaata taggcgttta ttggaagaaa gaaaaataac      3000
     atcaagggat tcatatgaag attattattt cagtatcttg gaattatgtc gtaaagctca      3060
     tatcacagat gatgcagaca ttgtcaatta tttgatcaag ggtttacctg ctcgtttggg      3120
     caaggaaatt tataattccg gaccacttaa cccagaagac gtttatgaga aaatggttag      3180
     agcatccaaa tttgactccc ttttaggaaa aggtgcatat atgcaagatg aagagatgaa      3240
     cgtcattatt gatacagtcg cagaaaaatt gcagaatacg aaattgggac aaaatacaaa      3300
     gaatgaagca aattttgtgc aaaccaaacg cggtaaattt cgcggatcca atcgtggcaa      3360
     ttttaataga ggaaactttc gaggtaatcg aggtaattac aataacggca accgtggcta      3420
     ctatcgtaat aattaccgaa accgaggcaa ttataacaac tatggacgtg gacgatataa      3480
     taatgctcca caaggcaatt acggaaattt caatggcaat tataatggtt atcgaggcaa      3540
     taataataac tataatggca attataacaa tcgaggtaat aattatcgag gcaattctta      3600
     tagaggcaat aactacagag gtagaggtcg tggattccga ggtggaccac gtaatcaata      3660
     tgataatcga ggaaataatg ataactatca gaatcagaat agaaacaata atgcttatgc      3720
     caacaccgca caggcttcac aagatgaagg tcctaatgtg cgttacaacc cggaaaacta      3780
     aatactgtga taggaattga cgagtgtcct gtcactgtta atttggctta tacaaatctc      3840
     gtcatgatgc atctttacat aaataggaaa aaggttttag ctctcattga tactggcgca      3900
     acagcttcaa ttattcctcc gaatttagtt acaaatatga ctttaaagaa acactcagtg      3960
     tatattaatg gcattaatgg taaaggtatg gctttaggaa agatagaact gccgttcgct      4020
     tttccagata caaacgaaga attatatttt cccttccttg tctatcctgt aacccgtcca      4080
     atcattggca atgatatctt gtctagacta agtttaaaaa ttgaattccc ttccagatcc      4140
     attcaatata aacaattcca actacctttt tatcttcatt cccaagaaat caattctatt      4200
     gaaacacctc cttctaccaa agttaaagtt agtaaacgtg ttatcattcc ttccaactcc      4260
     tatatgaaag ttcaagctta caatcccaat gattcggtat acttcgagcc ttctgatgtt      4320
     ttaatgttgt atcataatct tcttcttcct caaatttact taccaaaaca aggcaatgtt      4380
     gaaattccta ttctaaaccc caacgcgtat ccagttcaat taaattctca cactacctta      4440
     ggagaagtgc aaggtcttgt agaaattcat catactaatt acattctatg taataaagaa      4500
     aagcaaccta ctgcgaatag taattctgag tttgatatca ataaggaatt aggatcaaat      4560
     cagaaacttc agttagccaa cttgttagaa gaatacacta tgattttctc caagtcagat      4620
     gatgacattg gtaattatcc tggtcctgaa agaatgtcaa tagatacagg ggatagtgaa      4680
     ccaataaatt tgccgccata tagaaaatca cacactgaaa gaaaaataat aagggattat      4740
     attcaaaagt ttttaaaagc tggaatcatt gaggaatcca attcagatta tgcttctccc      4800
     attcttctta ttagaaagaa ggatgaagga tggagaattt gtatagatta tagattttta      4860
     aatgatgtca cgaagacaca aaattatccc atgcctagat tacaagatat atttgatagt      4920
     ttgtataatg ctaagttctt tagcaaaatg gatatagccc aaggctattt tcacttctgt      4980
     ttagatgaaa aagataagca caagagtgca ttcattaccc aagatggttt atatcaattt      5040
     aatagaatac ctcaaggaat gaaaaatagt ccttccttct tcaatagagt gttacgaaaa      5100
     atatttagta atcttttata taagcacaca tttttgtatt tagatgatat tttatgttac      5160
     agtaaaacgt ttgatgaaca cgttaaagcc ttaaaagatg tgtttgaaaa attgaggcta      5220
     aatggtataa agttgaaacc cagtaaatgt tcttttggtt ataatgaaat acgaattttg      5280
     ggtcatgtct taaataaaga tggtgtcaaa gtagatccaa gtaaagtatc tgctgttgtt      5340
     aaaatgccta ttccgcaaaa tgttagtgaa gttcgcactg taatgggcat gttcagttac      5400
     tacagaaaat ttataaagaa ttttgcaata atagctaggc ctttagtaat gttaactaag      5460
     aagaatcatc cttttgactg gacgagagca tgtcaatcgt cgtttgatat tttaaagaat      5520
     aaacttatta cagctcctat tctagctcag tttaaagaag actctgatgt aattttatat      5580
     gctgacgcct ccttatatgg aattggttgt gtactcacgc agatccaaga tggtaaagaa      5640
     aaagtaattg cctatgctag tagagcactt aatccagctg agataaaata tagcattgct      5700
     gcgagagaat gtttagctgt aattttcgga ctaaaccgat tttctgaata ttgtcatggt      5760
     cgacattgta ctgtaattag cgaccatcat tcattgtgta gtttgttaag aactaaaaat      5820
     agtaagaatc ttcgtattgc gcgctgggcg cttgaagttc agcaagcgga tataacagta      5880
     aaatatagaa aaggttcttt acatggaaat gcagattgtt tatctagatg tattccatta      5940
     tctgcccctg caaaaggttt tgaatctgtc ttcccagtta cggttaagtc aaaaccaaca      6000
     atgtctaagg ttaagcaaga tttagattat aggtcacaac ttaagataaa tcaacgtaag      6060
     gataaatttt ataatcagat atttactatt ttagagaata atatgcctat tccagataag      6120
     tttaagcatt ttaagattat tgatgatact ttatattatg ttgatcaatt tagtgaaatt      6180
     aagaaattat gtattccaac ttctatggtt aatgatattt tatttgcaca tcatgataat      6240
     tatttaggcg gaggtcattt aggtgttaag cgtactgtta atacgattaa gattaaatat      6300
     tattttccta atatggctaa tatgattgcg aaatatgtat ccaactgtca aaaatgtgcg      6360
     gaaagacaac cagcaactca acctaaaatt ggacgcatgc agcctggtga aatctacgac      6420
     attttccaga aatggcaatg tgatgcaatt ggaccgctta cggaatcagc ccgaggaaat      6480
     aagtatattt tagctgctat tgatactatg agtaaatatg ttgtaactag acctgtaaga      6540
     gaagttaatt ctactacttt agctaagttt ttaatcgagg aaatattttt aagattttct      6600
     gttcccaagg aaattcaatt tgataattct tccgttaata gagctaagct tattgatgaa      6660
     ttgatgaaaa aggtaaattg tactccaaaa tttattactc catttcagca taaaagttcg      6720
     ggacaaattg aaagattgaa tcgaacatta gaagagatga taagcaaaat aattgataaa      6780
     actcaacaag attgggattt agcgttaagc attactactt ttaattataa tactactgtc      6840
     cattctacta ctaaatattc tcctcatttg ttagtttatg gaactatgcc tactattcct      6900
     ttagatatag ctttggatcc acaagcgaat aactattatg gaaatattga taaaataaga      6960
     ttacatgcta agcaaaatag tttgataagt caaaataatt ctgcagaaaa atataacaaa      7020
     acgagagttg aaaagaagtt acttcctggt atgatgatca tgttattacg tcatgttttt      7080
     actcctggtc taagtaagaa attgcaaagt aagtattttg ggccgtataa aattgtaaga      7140
     caaattaatg atttacacta caaagttaaa aatatgtctt tgatcaaacg gaaaaagaaa      7200
     tttgaaatcg ttcatattga tcgtataaaa cgtattggtg atgatatttt agaagctaat      7260
     aatgacattc aattgaccgc accaagccta attactcctg ttcaagattc acaaaaagta      7320
     acatatcctc tgcggcaaac agaccaagac acggttcctc caccaaccta tcaaaaatct      7380
     ctacgatctc ctgatgcaca caataaaaat actataacag ttacgacacg ctctgggaga      7440
     acaacaagtc gccctacgag ttataaactc actcgagaca aaagatccaa ttaaacattg      7500
     gcaaacaaga ttgtcatggc gaccaccgac tcaaactgtg ttggaactta cagtttctat      7560
     gaggggccgt                                                             7570
//
ID   Gypsy-57_SiCu-LTR repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-454
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5134-5134 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 454 BP; 138 A; 107 C; 46 G; 163 T; 0 other;
     tgtttcgtct agccatttca ttccatcctt attataaata tcaatcctct ccttattcct        60
     tacattctct tggtcaatga acgagctatt atattcgtaa atatcaaccc acttttattc       120
     tacatacaac aagtcgccaa cttgttcact ttcaaatccc gtttgcaata ccgttataat       180
     cgtatacatg acatgatcaa catccttctc agtttcttct cataagatat tattatgcat       240
     tattgtatga ggattactag gtaagcaaca ttgtacaatg gccaagtgca acgtcgctcg       300
     ctatagttcg ctgtagccca ttagccttca tagaataaac accaaaatta ttactactct       360
     cacttcactg cctacttaaa aattcctcat tttatttagc atattttcat cgcatatttc       420
     caataattat ctaaatttcc acagaattca aaca                                   454
//
ID   Gypsy-57_SpEx-I repbase;    DNA;    INV; 5356 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5356
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4124-4124 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..4384
FT                 /product="Gypsy-57_SpEx-I_1p"
FT                 /translation="MSGPYLHGLGKRNRQCSETTSSDDEIFFSDDRPSAAV
FT                 NKKRHVAPSDAEVIPKFRPEDNSSNVVGWLHKIDQLGDVYGWDDTDRTFIM
FT                 QLRLRGAARDWYDDLENYDLTWDGWKEMLRVAFPRSIDYADKLERMMARTK
FT                 EDKESMTKYYHEKLSLLRKCCINGTDAISCIIRGLPIELRANAKAYSCETP
FT                 EQLYFGYLSSLENFKRVESNSSRKSTWKRGGSGGGTTQESSSLNQHQPKIC
FT                 YTCRRPGHEAKNCRQQHLCTNCGRRGHKTEECWFAAGTSQPQKVSQNSHVL
FT                 HITYDIYLDYYKKTVDINGHQLIAYIDTGSKLNILTVSQAKKLKVKIEPST
FT                 IIMRGFGGACVNSLGSCQLNVLIDNVTLNGVVELTDYISSDIDLLIGQSMI
FT                 NSKGVSLVTSDSSVSFVESQIVQSALANIKLQQSDFIEKFSVYVKHQVNIP
FT                 KQSQSYIEVYINDSLISGKECTFLTRTVWVQIGNMSYLIPSAIINSDHSYL
FT                 KVVNLGLCDLIFHDNQLIARAELVTVPINMEKPKVFTVDNVEANNVQINLT
FT                 DINVGHLSDIENEQLLTLLNKYTHSFARSTKDLGCTDLIKMHIHTVNDQPV
FT                 YCKPYRLSHKENEIVKQKVTDLLEAGIIRESMSNYASPVVLVKKKGGDYRL
FT                 CVDYRALNSITIKDRYPLPHIEDQVNKLSGKFYFTTLDLAQGYYQVKLDED
FT                 SISKTAFVTPSGQYEFLKMPFGLANAPAVFSRLIQMTLGRVEQNIALYLDD
FT                 IMLPTTSIEEGLLLLEKVLQFLRDANLKLNLNKCSFLKSTATYLGHEISAG
FT                 TIQPGLAKIKCVAEYNRPRNVHEIRQFIGLTSYFRKFIRGFAQLARPLTEL
FT                 TKKDADWHWGSDQENAFLALKQRLIERPILAIYNSDAKTELHTDASKIGLG
FT                 GMLMQYQSDASLKPVAYFSRVTTKEERHYHSYELETLAVVESLKRFRIYLT
FT                 GIKVKVVTDCSALRTTLTKRDLVPRIARWWLTIQEFDLEIEYRPGERMRHV
FT                 DALSRNPATNLILIIDNSDWLITLQLQDHNIQNIINRLRENPDPNLAINYI
FT                 VKEGILFRKTVAGDRFVIPKLAKYGLLQKLHDQIGHPGFEKCESAIKAQFW
FT                 FEGMTRFIRKYINSCLQCAFNKGNYGRLEGELYPIEKPAVPMHTLHTDHLG
FT                 PFAKTRKGNSYILVVIDAFTKYVFARPAKNCSSIETIRLLKEIILQFGYPI
FT                 RIITDRGKAFTSRYFKQFADENQFKHILNAIASPRSNGQVERVNRTLLNGL
FT                 NTMTESECTWDNKLDDIVWGINNTPNATTGFSPFNLMFGHKNSRYPAFPSH
FT                 VPSTSELQLKELQANRETAKLRIDRNMTAMKARFDKKRKKCIKYAVGQLVL
FT                 WKGGVTRDSSSGVTRKLNGLYTGPYKVCKVDHLLDRYTITSIKGMKGYRKF
FT                 SAVVRGETLRPYKPTMSEDDSSGSDHEVDRDDLIDLLES"
XX
SQ   Sequence 5356 BP; 1762 A; 974 C; 1075 G; 1545 T; 0 other;
     tctcagaagt gggattatct ggacaatgtc tgggccgtat ttacatggac tcggtaaacg        60
     caaccggcag tgcagtgaaa cgaccagttc agatgacgaa attttttttt ctgatgaccg       120
     tccgagcgcc gccgtcaaca aaaagcgaca tgttgctccc agtgatgccg aagttattcc       180
     aaaatttcgt ccggaagata acagtagcaa cgtggttggt tggctccata aaattgacca       240
     actcggtgat gtatatggtt gggacgacac tgaccgtaca ttcattatgc agttgcgcct       300
     acgtggtgct gcgcgtgact ggtatgacga cctggaaaac tatgatttga catgggatgg       360
     atggaaggaa atgctacgcg tcgcgtttcc tcgatccatc gactatgcag acaaattaga       420
     acgcatgatg gcccggacga aggaggacaa ggagtcgatg actaagtatt atcatgaaaa       480
     attgtcgctt ttaagaaaat gttgtatcaa cgggacagat gctatttcat gcataattcg       540
     gggactgcct atagagttac gagcgaacgc taaagcatat agttgtgaaa ctcccgagca       600
     actctacttt ggctacctgt cttcactaga aaacttcaaa cgggtagaat ctaactcttc       660
     tcggaagtct acgtggaaac ggggcggttc aggtggtggt actacgcaag agtcttcatc       720
     attaaatcaa caccagccga agatatgcta cacgtgtcgc cgtccaggtc atgaagccaa       780
     gaactgcagg caacaacatc tttgtaccaa ttgtggacgt aggggacata agactgaaga       840
     atgctggttt gcagccggga catctcaacc gcaaaaggtt agtcaaaata gccacgtgct       900
     gcatataacc tatgatatct atcttgatta ttataaaaag actgtcgaca taaatggtca       960
     ccaacttata gcgtatatag atactggcag taaattgaat atacttactg tctcacaagc      1020
     taagaaatta aaagttaaga ttgagcctag tactattatc atgagaggct ttggtggagc      1080
     ttgtgtaaat tcactcggtt catgtcaatt aaatgtattg atcgataatg taactttgaa      1140
     cggtgtagtt gaattaacgg actatatttc atcggatatt gatttattga ttggacaatc      1200
     gatgataaat agtaaaggtg taagtttagt tacctctgat tcgtcggtaa gttttgtaga      1260
     aagtcaaatc gtacagagcg cattagcaaa tattaaatta caacagtctg actttattga      1320
     aaagttttca gtctatgtaa aacaccaagt taatatacct aaacaaagtc aatcatatat      1380
     tgaagtgtat attaatgaca gtctaataag cggaaaagag tgcacattcc taacacgtac      1440
     agtatgggtc caaatcggta atatgtctta tttaataccg tccgctatca ttaattcaga      1500
     ccattcctat ttaaaagtag taaatttagg gttgtgtgat ttgatatttc atgataatca      1560
     gttaatagcg agggctgagc tagtcacagt ccctatcaat atggagaagc ctaaagtatt      1620
     tacagtagat aatgtagagg ctaataatgt tcaaattaac ctaacagata ttaatgtagg      1680
     tcatctcagt gacatcgaaa atgaacaatt attaactctt ttaaataagt atactcactc      1740
     ttttgctaga agtaccaaag acctaggatg caccgacctt attaagatgc acatacatac      1800
     agttaatgat caacccgtct attgtaaacc ctacagatta tcacataaag agaatgaaat      1860
     tgtgaaacaa aaagttacag atttattaga ggcaggcatc atcagggaat ctatgtctaa      1920
     ttatgctagt cctgtagtac ttgttaaaaa aaagggaggt gattacaggt tatgtgtcga      1980
     ttatagggca cttaattcca ttactataaa agatagatac cctttgccgc acattgaaga      2040
     ccaggtcaat aaactttcag gcaaatttta ttttacgaca cttgacctcg cccaaggtta      2100
     ttaccaggta aaacttgatg aagactccat atcaaaaaca gcatttgtca caccgtcagg      2160
     ccaatatgaa tttttgaaga tgccattcgg tttggctaat gccccagcag ttttctcacg      2220
     cttaatacaa atgacgttag gcagagtaga acaaaacatt gccctctatt tggatgacat      2280
     catgttacct acgacgtcca tagaggaagg attattgctg ttagagaagg tgcttcaatt      2340
     ccttagagac gccaatttaa aattaaattt aaataaatgt tcttttctta aaagtactgc      2400
     tacttattta ggtcacgaaa tctcggctgg tacaatacag ccaggtttag caaaaataaa      2460
     atgcgttgca gaatataata ggccgcgtaa cgttcatgaa attagacaat tcatagggtt      2520
     aacctcgtat tttaggaaat ttattcgtgg ttttgcacaa cttgctcgtc ctctaacaga      2580
     attaacaaag aaggatgccg attggcactg gggctctgat caggaaaatg cattcctggc      2640
     tctaaaacag cgtctaattg aaagaccaat cttggctatc tacaattctg atgctaaaac      2700
     agaattgcat acagacgcaa gtaagatagg attaggtgga atgctcatgc agtatcagtc      2760
     agatgctagt ttaaaacccg tagcctattt tagtagagtt acaactaaag aagaaagaca      2820
     ctatcacagc tatgagcttg agacgcttgc cgttgtagaa tcccttaaac gattccgcat      2880
     ttatttaacg ggaatcaaag ttaaagttgt aactgattgc tcggctttaa gaacgaccct      2940
     tactaagagg gatttagtac cccgtatagc tcgctggtgg cttacgatac aagagtttga      3000
     ccttgaaatt gagtatcggc caggcgaacg tatgcgacat gtagacgcgt taagcagaaa      3060
     tcctgctact aacttgatac tcattattga caattctgat tggttgatta ctctgcaatt      3120
     acaggatcat aatatacaaa atatcataaa tagacttcgt gaaaaccccg atcccaatct      3180
     tgctataaat tacattgtta aagaaggcat attgtttcgg aaaaccgtag ctggagatcg      3240
     tttcgttatt ccaaagttag caaaatacgg tttattacaa aaattacatg atcagatcgg      3300
     gcacccggga ttcgaaaagt gtgaaagtgc tatcaaggct cagttttggt tcgaaggtat      3360
     gaccagattc ataagaaaat atattaattc ttgcttacaa tgtgcattca acaagggcaa      3420
     ctacggcaga ttagaaggag aactctaccc gattgagaag cctgcagtgc ccatgcatac      3480
     tctacatact gatcatcttg gcccttttgc taaaacgcgt aaaggaaatt catatattct      3540
     tgtagttatt gatgcattta ccaaatacgt gtttgctcgt ccagctaaga actgtagttc      3600
     cattgaaaca attcgactac tcaaagaaat tatattacag tttggttacc ccattagaat      3660
     aattacagat agaggcaaag cttttaccag tagatatttt aaacaattcg ctgacgaaaa      3720
     tcaatttaaa catattttaa atgctatagc cagtccgcgt tctaacggcc aggtagagcg      3780
     cgttaatcgc acgttactga acggtcttaa tacaatgacg gagagtgaat gtacatggga      3840
     taataagtta gatgacattg tgtggggtat caataatact cccaatgcaa caactggttt      3900
     ttcacctttc aatcttatgt ttggccacaa aaattctaga tacccagctt ttccttccca      3960
     tgtaccttcg acctctgaat tgcagctcaa agagctccaa gctaataggg aaacagctaa      4020
     acttcgtatc gataggaata tgactgcaat gaaagcacgc ttcgataaga aaaggaagaa      4080
     gtgcattaaa tatgctgtag gtcaattagt gctctggaag ggcggggtaa ctagagactc      4140
     ctcttctgga gtcaccagaa aattaaatgg cctatataca ggtccataca aagtatgtaa      4200
     ggtagatcat ttattagacc gttacaccat cacaagtatt aagggtatga agggctatag      4260
     aaaatttagc gctgtagttc gtggtgagac acttcgacca tacaaaccaa ccatgtctga      4320
     agatgatagt tcaggtagtg atcacgaagt tgatagagat gacttaattg atcttctaga      4380
     aagttgaatg atttttatat attttatcat cttttcataa gcaagttact gttaagaatg      4440
     tgcaactcta caaacatgtt attaatttat tatattaact gtcctttaac caaacaacaa      4500
     actgtgtagc ataatttaaa aataaccaca tattctgtaa gttactgatc attaggcaat      4560
     agtgaagtat tatgctaact aataccatga ttataattta gtaaattaat taaatactta      4620
     aacatagtaa acatagagta gctactacaa atattgttct tttatttttg ttccataaac      4680
     actcattatg cgggactatt aaaaatcaag taacaccgaa atgatctcgt gtcacttaca      4740
     atgacatata atgtaagtgc aaaatataac taattaacag accttcgtag gacagctgtg      4800
     tgatcaagtc cactttagta tctgtatggt attgcgaggg atggctttgt gatcaagtcc      4860
     attatattgc agagagggca gctgtgtgat caagtccaat atcatataaa agggacagct      4920
     atgtgaccaa gtccattata ctgcagagag ggcagctgtg tgatcaagcc caatataata      4980
     taaaagggac gactatgtga ccaagtccca tataacatat attatgtagt aaggaccact      5040
     gtgtgatagc ctcatacata tatagtatat agcaaggaca gctgtgtgac caagtccaat      5100
     aaattgcagt atggacggct atgtgaacaa gtccgctgcg actaaaaaca actgtgtgaa      5160
     catgtcatga accctgtgta tatgtatttt tcctgtgtga cataaaaata ttatattaga      5220
     aaacacattc aactattttc atattgtgta aagcaaccag ttactgcgga gtattattct      5280
     ctatttcagg ataacggagc tgcttctgga tggcgtaaca gcgaccgtgg gacacggtct      5340
     gggcaggatg gccgag                                                      5356
//
ID   Gypsy-57_SpEx-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-340
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4186-4186 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 340 BP; 127 A; 35 C; 51 G; 127 T; 0 other;
     tgttaaccag tactagcaac accaaataag aggacagcgg atatgacgtc atatttagat        60
     tatttattta ctgattaatt taaataattg atttataatt atgtcctgag taattcgatt       120
     taatttattg tattaatgat cactggagat ttaatcacac tagaaataat atttattaaa       180
     cataaataac tagtcatttg atattttatg aaagtataaa taaggtagga cgattatttt       240
     taaggcataa ttgttcgtga tttgaaaagg accgttactc tgctaaaata catactagtt       300
     gtgataaaaa gtgttaagtg tttactttta tactgtaaaa                             340
//
ID   Gypsy-57_TrVa-I repbase;    DNA;    INV; 12669 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-12669
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 302-302 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           458..2950
FT                 /product="Gypsy-57_TrVa-I_1p"
FT                 /note="gag and zinc finger."
FT                 /translation="MPPATEESFINLKVGDKSYNIRTDHFIDLLREKLPEK
FT                 VKKKHILTQDVLESLAELQSNEIKQYLFEKLHLCVPDGPMMHSSETPFLDV
FT                 PIKKPQAQEIPTEIELTKNHRYNNVARFNRARLIIEFGKRDIPYNFINLRP
FT                 ARSELAKILNDEYQYRCLTPMSIDSGTEDDKSMNNFESEKHEDLPNSQQNE
FT                 IMNSSQVNENLEQRASAPPVGLLEDSRFSQFHEEAGMNHSGPYCNDNQSLY
FT                 PQLPNISQQACTYPQGNSFKGMPRIQPMSINNVFTEGNPAPNNERNMRNNH
FT                 NNQPTNFDPNENINFNTGHQSNNYGNESNFENKSYNVHDRFNPDHLTLARQ
FT                 PQNFNFKPSSKKPLFEPPKFSGYPTEDIFEFIKSYKKAARVNNWTDQEQID
FT                 LLENYLTGTALKYIRSLDETYGRDLNFDMATESLVKTFAPVQRQTRLEVEL
FT                 LNMRQGINQTIEDFLISVESLAKRCDPKMPENKIVTLCLKGMRKDIAKDLL
FT                 LRPMNSMIDLREGIRILENREFLLNQGLTDFSINAQPPPNIAATTNKNSDQ
FT                 LVTLVQSMQGQIKTLCENMNKVKIPDLSDLPINAIFENYYSKNRNNDRYQE
FT                 RNNRATDNNNNRRYSSPSPNRNRDSNRDIHRDRSRDRNMRENSAYKPANSS
FT                 NNASYNDRNTSYDRNKSNYRESSRDRDNAMNRNNSRDRYKSRDGYNSRDRY
FT                 NSRERYNSRDGNNSRDRYNSRDRYNSRDRXNSRDRYNSNDRHPSRDRYRSR
FT                 DRNDSYSRPNERDSRSPHQNSNQTDNRNRSAERKSNQEKSDRQQNMRSQSK
FT                 DKLVCYNCNGNGHYQAQCPSPRSPSQHPN"
FT   CDS           2884..6948
FT                 /product="Gypsy-57_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LQWERTLPGSVPVPALPFPAPKLIAAHLPQEPDKWVG
FT                 SINGSDATSSLNENDSSSHFTPRPSTPVAKTPRKQITFFEPNAYLVSPMIN
FT                 SEEASQIDELHEPGVRIMVSFQDKKVLALLDTGADISIIQLKQVNPHKIEG
FT                 IRGIPLVTADQSPLKIAGTIPLNFEIGPIKFNYRFIVAKKLSVPIILGNDF
FT                 AYQHIESFNYKQNYALFNDPENDQQVRIPTFGSIRTVAKTIQSGEVIPEDI
FT                 EMKNTKYLTSSINERDIFDIDVPTNENSIKCFAKAQNFIYIFPNRTTEVPI
FT                 LWTGNAISESNQLKPTPSLNKLALTLGSENANIDTKMLKIQNTTPNLKVIY
FT                 PNTKLAESSPILVSAITTEEKLDHNSKPKTPILTPADSLINEKLSQDRKSQ
FT                 ILALIEKYQDIFTWDKTKFQAAKANFPPQKIPITKNEPIYQHPYRVSKKEQ
FT                 EIIDENVAELLKSNAIYESNSLWSAPLILIKKKLTFYDKKQGCTTPEYRVA
FT                 INFKKQNECLGLLHFEMPKISDILSDYANKKYFSSLDLTKFFNQIPIDPET
FT                 SEVLSFSTHSGHYSFRCLPNGVHAGTSLAQGIAHKSFGDIKDVSVYVDDIN
FT                 IATETFEEHMKALERVFQRCREKNLKVHPKKSTYGNTETTIFGFLLNAEGM
FT                 RIDPEKIAVIKNFKRPTTKKQTRQWIGFANYFRHFAKNMSVILAPLYEVAK
FT                 PTTKFQWGKEQEEAFIKSRDILCEAPVLTHFDPNLDIYLDTDASNIGIGAV
FT                 LCVKTKEGDIKPVAYGSHKLNETQIRRLSVSEKEMYAITFFCKKFRNYLFG
FT                 NQVTIRTDHRPLIYISKGKNINSTLSKFLLQISDLTYTIKYRKGTLNNAAD
FT                 MLSRMYEPDEEEEPLTKDKSTMTSNDLVLVATVTTALPDNVKETFQKTDLN
FT                 PADFATYQREDSKYKDLILALENPENFPPTLVRKVKNYELRNRLLFRKSYT
FT                 GNNKLMIPDKLRILWLNAAHDCRMTGAHSGFKRTLSKLQDYDWPTKLKDCR
FT                 NYVQSCINCQKAKYSTQSPKGQLEPTKVVEIPFYKVVIDISGPYNSSNRKK
FT                 YVCSLVDSYTKFWYAKPTTSATGHEVAKFLLDCFAIFGFPSIIKSDNGPGL
FT                 IESSLKELLKALDINHQLSPFYTPRVQSSAERNFRTQGEILRAYVNSNPKS
FT                 WSEYIIPMTSAYNIAPHSTTRVSPFFLLFGVHPRLIPAPELREKCITDFAN
FT                 DRLEILDKVRKQAIERIKLAQSKMKEKLNRNRKKIKFHLGEKVLIQKPVKK
FT                 KNETSKLHPKFYGPYYVVAKKTPSIYIVRESYLNPSSKQEQIHVERMKRYF
FT                 DPKFYRKSLYTSDIVSEIPDPDFYDPDILLESDDEEAEIETAK"
FT   CDS           7509..9404
FT                 /product="Gypsy-57_TrVa-I_3p"
FT                 /translation="MRGFSILIWMLIPQLAFCSTSSITGFDCIGKPLQQTE
FT                 ISLRQIKECDTSSDMPKNVTVTIQVVQQNDEVPIKTISCKIEVFRLVQKCA
FT                 WLSDLQTVKNSIATFYPDISINECKTMIDTKSYSKYSNMVDLNINGFTERS
FT                 TLLAGKVENNGKCRGDDYSDWFGSYSDAIVHGTVKFTLYESEAMFNPSLNE
FT                 IYLQTGVKCVFTAGKCFDPVRGHTFWDPVVQDKCDNKHYSVLYEGPAFRFN
FT                 DSNSLDPISYLVDEEDVAFSLKAIKNTRICHQDAFLTEHARFYVIPKSEYG
FT                 FSFEKTTRKITAELLTYFNIKFVFLEKHLATSIRQLYTSLKLANCQLERQL
FT                 LEHHLTLAIHHQNDFAFLRGGGPGYTAVTMGEVTYLIQCRPVPVELRSTNI
FT                 CYNEIPVLYSNQSMFLAPRTRILTSKGTEIDCTPHLPVKFEINGQWYAFSP
FT                 TVTVTQPPNELESKFSVNWTYENPKNLLKAGIYSQEDIKAYQRRISYPLES
FT                 AAVQTALIREALGYPQADRGIKFENFLNEASFETILQRTTHKVWGAFYKIG
FT                 TITSGLIGIMFVIKMVKTFLDMLFFGKLLHEIFGWSWRLIAASCDSVANYL
FT                 IHSHHVKKQRPPAEGFVNMQQITHSSPPPIYVSN"
FT   CDS           11193..12068
FT                 /product="Gypsy-57_TrVa-I_4p"
FT                 /translation="MNRPFSTVPGDSIKNLTKASDASVQSNFHRENIPTAV
FT                 PSLPPVPPLLSPMSSPEHYQPSTSSLSDIPLPSYIPTPIKNLPKTLPAIPP
FT                 FRIKTKPVTVTSIPKKQSAPISATKTLASPLFKLPLPSVPTKKPSFEQALL
FT                 NSAIPTKFKRRHVASSQQNQPQVTKPSPQVTRPLPLIKKSVPLLSQPLSQP
FT                 LPQPLPQPLPQPMPQPLPQPLPQPLPQPLPQSLPPPLISAKPQISQPKKKR
FT                 MRGCRAGKFVQLKRLQKARKKLATSASNQSNKNNIKPKNHSPVSHINFNNL
FT                 "
XX
SQ   Sequence 12669 BP; 4299 A; 2550 C; 2029 G; 3773 T; 18 other;
     ttggtggacg ccaatctttc ccgtacctgc aattaaataa ataaagacca gtcgtagagt        60
     agtgtaagtt tgatgcaaca tcctagtatt ttggtcatct tttagaacat atatagtcaa       120
     aaatcttaaa tttttgagta attccmaatt tttcccaagg tacagtccat tcttgtaaat       180
     aaatgtaatc aacgtaacaa tttaggttta atgtaacatc gacaaaacat ttccaacaca       240
     tttttgtttg aaatattttg tagatgcttt aaagttagga tagaaagcac ccttctttgc       300
     tgatttttct agagagttta tggatatctt tattccagtg tacgttcgaa aaatagaatc       360
     aatattccaa aagaaataag agataaatag aatctaggta agctatagtt tcgcagatgt       420
     gaaattttta cttctaaaga aattgtcgaa tttaaaaatg ccaccagcca cagaagaaag       480
     ttttatcaat cttaaagtag gcgataagtc gtataatatt agaacagatc attttataga       540
     tttattgcga gaaaagttac ccgaaaaggt aaaaaagaag cacattctga cgcaagatgt       600
     actcgaaagt ttagcggaat tgcaatcaaa tgaaatcaaa caatatttgt ttgaaaaatt       660
     acacctgtgc gtccctgatg gacctatgat gcacagtagt gaaaccccgt ttttggacgt       720
     tccaattaag aaacctcagg ctcaggaaat acctacagaa atagagctaa ccaaaaatca       780
     caggtataac aacgttgcaa gatttaatag ggctaggctc atcatagaat ttggcaaaag       840
     ggatatacca tataatttta tcaacttaag acccgctcgt tctgaattag caaaaatttt       900
     gaacgacgag tatcaatatc gttgtttaac acccatgtca atagattcag gaacagaaga       960
     tgataagtca atgaataact ttgaaagtga gaaacacgag gaccttccaa actcccaaca      1020
     aaatgagata atgaattcat cacaggtaaa cgaaaatcta gagcaaagag catcagctcc      1080
     accagtaggt ttgctggagg actctcgttt ttctcaattt catgaagaag caggaatgaa      1140
     tcattcaggg ccttattgta atgataatca atctctttat cctcaattac ccaatatttc      1200
     acaacaagct tgcacctatc ctcagggaaa ctcttttaaa ggtatgccaa gaattcagcc      1260
     aatgagtatc aataatgtct tcacagaagg aaatccagct cctaataacg agagaaatat      1320
     gagaaataat cataataatc agcctactaa ttttgatcca aatgaaaata ttaacttcaa      1380
     tactggtcat caaagtaaca attatggaaa tgaaagtaat ttcgaaaata aaagttacaa      1440
     tgtacatgat agatttaatc ctgaccattt gaccttagcg agacagccac aaaactttaa      1500
     tttcaaacct tcttcaaaaa aacctctgtt tgagccacca aaattctctg gttacccgac      1560
     ggaagacatt tttgaattca ttaaaagcta taagaaagca gctcgtgtga ataattggac      1620
     tgatcaagag caaattgatc tactagaaaa ctatctgaca ggtactgctc taaaatatat      1680
     aagatcatta gatgagacct atggcagaga tttaaatttt gatatggcca ccgaaagctt      1740
     agttaaaacg tttgcaccag ttcaaaggca aactagactg gaagtagagt tattgaatat      1800
     gaggcaaggg ataaatcaaa ccattgaaga ttttttaata tcagtagagt cattagcaaa      1860
     gagatgtgat ccaaaaatgc cagaaaataa gattgtgaca ctttgtttga aaggaatgag      1920
     aaaagacata gccaaagatt tattattaag acctatgaat tcaatgatag atttaagaga      1980
     aggcatcaga atccttgaaa atagggaatt tttattgaat caaggactaa ccgacttttc      2040
     cattaatgct cagccaccac ccaatattgc agcaacaacc aacaaaaatt cggaccaact      2100
     agtaacctta gtgcagtcta tgcaaggaca gattaagacc ctttgtgaaa atatgaataa      2160
     agtgaaaata ccagacctca gtgatctacc aataaacgcc atctttgaga attattactc      2220
     aaagaatcgt aataatgata gatatcagga aagaaataat agggctaccg acaataacaa      2280
     caataggaga tattcttccc cttctccaaa cagaaataga gatagcaata gagatataca      2340
     ccgagaccga tctagagata ggaatatgcg agaaaactca gcatataagc cagcaaactc      2400
     gtccaacaat gcatcatata atgatcgtaa tacctcatat gataggaaca aatcaaacta      2460
     tagagagtca tctcgtgatc gagacaatgc aatgaatcga aataattcga gagatcgata      2520
     taagtcgaga gatggatata attcgagaga tcgatataat tcaagagaga gatataattc      2580
     gagagatgga aataattcga gagatcgata taattcaaga gaccgatata attcgagaga      2640
     tcgawataat tcgagagatm gatataactc taatgataga catccatcaa gagatagata      2700
     cagatcgaga gatcgaaatg actcttatag tagaccaaat gagagagact cacgatcccc      2760
     ccatcaaaat tcaaatcaaa ctgataacag aaatcgatct gcagagagaa agagcaacca      2820
     agaaaaatct gacagacagc aaaatatgag atcgcagtcc aaagataaat tagtttgtta      2880
     taactgcaat gggaacggac actaccaggc tcagtgcccg tccccgcgct ccccttccca      2940
     gcacccaaac tgatcgctgc tcacttgcct caagagccag acaagtgggt aggatctatc      3000
     aacggctccg atgcgacgag ctcgctcaac gaaaatgact cctcttctca ctttactccc      3060
     aggcctagca ctcccgttgc taaaactcca cgaaaacaaa taactttttt tgaaccgaat      3120
     gcatatcttg tttctcctat gattaactca gaagaagcat cacaaataga tgagcttcat      3180
     gaacctggtg taaggataat ggttagtttt caggacaaaa aagtattagc tttgctagat      3240
     acaggtgcag atatatccat aattcaatta aaacaggtaa acccacataa aatagaaggt      3300
     atcagaggaa tccccttggt cacagcagac caaagtcccc ttaaaattgc aggaacaatt      3360
     ccactcaact ttgaaattgg accaattaaa tttaattata ggttcattgt agcaaagaaa      3420
     ttgagtgtcc ccattattct aggtaatgat tttgcctatc agcatattga gtcttttaat      3480
     tataaacaaa actatgcact tttcaatgat ccggaaaatg atcagcaagt aagaatcccc      3540
     acttttggtt ccattcgcac cgttgcaaaa acaattcagt caggtgaagt tattccagaa      3600
     gatatcgaga tgaaaaatac caaatactta acttcatcaa taaatgaaag agatattttt      3660
     gatattgacg taccaacaaa tgaaaattca ataaaatgtt ttgcgaaagc gcaaaatttt      3720
     atctatattt ttccaaatag aactactgaa gtccctattt tatggacagg aaacgcaatt      3780
     tcagagagca atcagttgaa acctactcca tcattaaaca aattagcttt aactttaggc      3840
     tcagagaatg caaatattga tacaaaaatg ctgaaaattc aaaatacaac cccaaatttg      3900
     aaggtaattt atccaaatac taaattagca gaaagttccc caatacttgt ttcagccatt      3960
     acaacggaag aaaaattaga tcacaatagc aaacctaaaa cccctatatt aactccagct      4020
     gacagtttaa ttaatgaaaa attaagtcag gaccgaaaat cgcaaatatt agctttaata      4080
     gagaaatatc aagacatttt cacctgggat aaaacaaaat ttcaagctgc aaaagcaaat      4140
     tttcctcccc agaaaattcc aatcactaag aatgaaccaa tttatcagca cccctacaga      4200
     gtctcaaaga aagagcaaga aatcatagat gaaaatgttg ctgaattatt aaaatcaaat      4260
     gcaatttatg agagtaacag cttatggtca gcaccattga ttttaataaa gaaaaaactg      4320
     accttttatg acaagaaaca aggttgtaca actcctgaat accgtgttgc tattaatttc      4380
     aagaaacaga atgaatgttt aggcctttta cattttgaaa tgccaaaaat ttccgatata      4440
     cttagtgatt atgcgaacaa aaagtacttc agcagtttag atttaaccaa atttttcaat      4500
     caaattccaa ttgatccaga aacttcagaa gttttatctt tttcaactca ttcaggccat      4560
     tattcgttta ggtgtttacc aaatggtgtc catgcaggca cctctcttgc ccaaggcata      4620
     gcccataaat cctttggaga catcaaagat gtgtcagtct atgttgatga tatcaatatt      4680
     gcaacagaaa catttgaaga gcatatgaaa gcgctcgaac gagtctttca aagatgtaga      4740
     gagaaaaatt taaaagtaca tcccaaaaag tcaacttatg ggaacactga gacaacgatt      4800
     tttggattct tgctaaatgc agaaggtatg agaatagacc ccgaaaaaat tgctgtaata      4860
     aaaaatttta agcgaccaac aaccaaaaaa cagacaaggc aatggatagg ttttgcaaat      4920
     tattttagac actttgcgaa aaacatgtca gtcattttag ctcctcttta cgaagtcgcg      4980
     aaaccaacca ccaaattcca atggggcaaa gaacaagaag aagctttcat taaaagtcga      5040
     gatattcttt gtgaagctcc agtgttaact cattttgatc caaatttaga catttatcta      5100
     gatactgatg catcaaatat aggcattggt gcagttttat gtgtcaaaac gaaagaagga      5160
     gacattaaac cagtagctta tggtagtcat aaattaaatg agacccaaat tcgtaggtta      5220
     tcagtatctg aaaaagaaat gtacgccatc actttctttt gtaaaaaatt tagaaattat      5280
     ctttttggta atcaagtaac aataagaact gatcacagac cattaatcta catttcaaaa      5340
     ggtaaaaaca ttaatagcac tctttccaaa tttttacttc aaatatcaga cctaacatat      5400
     accattaaat accgtaaagg tacgcttaat aatgcagcag acatgctttc tagaatgtat      5460
     gaacctgatg aagaagaaga acctctgacc aaagataagt caaccatgac atccaatgat      5520
     ttagtattag tcgcaacagt tacaacagct ttaccagaca atgtcaaaga aacttttcaa      5580
     aaaacagatc tcaatccagc tgatttcgca acatatcaga gagaagactc aaaatataaa      5640
     gacctaattt tagcgttaga aaatccagaa aactttcctc caacattagt tagaaaagtc      5700
     aaaaattatg aacttagaaa taggctttta ttcagaaaat catacacagg taacaataaa      5760
     ttgatgattc cagataaatt gagaattcta tggttaaatg cagcccatga ttgtagaatg      5820
     accggagctc attctggttt taaaagaact ctaagtaaac ttcaagatta cgattggcct      5880
     actaaactta aagattgtag aaattacgtg caatcctgta ttaattgcca gaaagctaag      5940
     tattcaactc aaagcccaaa aggtcaatta gagcccacaa aagtagtgga aattcctttt      6000
     tataaagtag taatcgacat ttcaggacct tataactcaa gcaataggaa aaagtatgtt      6060
     tgttccttag ttgattcata cacgaaattt tggtatgcta aaccgacaac ttcagccaca      6120
     ggacacgagg ttgccaaatt tcttttagac tgttttgcaa tttttggttt tccgtcaata      6180
     attaaatcag ataatggccc aggacttatt gagtccagcc ttaaagagct tttaaaagca      6240
     ttagatatta atcatcagtt aagtccattt tatactccta gagtacagtc atcagctgaa      6300
     agaaatttta gaactcaagg tgaaatatta agagcttatg tgaatagtaa cccaaaaagt      6360
     tggtcagaat acataattcc catgacctca gcttacaata tagctccaca tagtaccact      6420
     agagtaagtc cattctttct tctttttggt gttcatccga gacttattcc agctccagag      6480
     ctacgagaaa aatgtatcac agattttgcc aatgatagat tagaaatttt agataaggtt      6540
     agaaaacaag ccattgagcg aataaaactg gctcaatcta aaatgaaaga aaagctaaat      6600
     agaaatagaa agaaaatcaa attccactta ggtgaaaagg tattgattca aaagccagtg      6660
     aaaaagaaaa atgaaacttc aaaattgcat cccaaatttt acggtccata ttatgtagtt      6720
     gctaagaaaa caccttcaat ctacattgtt cgtgaaagct atcttaatcc ttcctcaaag      6780
     caagagcaaa tccatgttga gcgtatgaaa cgctattttg acccaaaatt ctaccgcaag      6840
     tccctctata cctcagatat agtttctgag atacctgatc cagattttta tgaccctgat      6900
     atattgttag agagtgatga tgaagaagct gaaatagaaa ccgctaagta aaaaaaaaaa      6960
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaacagtaa ataggttcaa attactcgca      7020
     aaataggtag gtaactgtct tttaacgagc acgcatttat ttagagcaaa aaccaagcaa      7080
     attgatgtga aatcaggaac ataattaaag ttgagaataa ttaggttcct tgttcaatct      7140
     gacaactgct ccaaaccgag ccgtgccgta acatcaggaa ggaatgcact tgaaaagggc      7200
     cccctgtggr aacgccgtgc gccgccgctt aaagaaaagg aaccggtgtc tagtccgaaa      7260
     cccgagactg tcatcactgg tccctttcaa aaacaaaacc aaaaaacaag caattatcac      7320
     accccctcat actcccccct ccccacccac ccatcttcta tctatccgac cctcgctctg      7380
     atcaagctag gttcctagga tattcattta tttttttctt tgcttatttt ttttttcttt      7440
     ttctctcacc cactgaccta tatttactca ttcccctctc ttttctgttc ttcttcagaa      7500
     aagtcaagat gcgtggattt tcgatcttaa tatggatgct aatcccacaa ctagccttct      7560
     gttcaacttc ctctatcacg ggttttgact gcatcggcaa accattgcaa caaacggaaa      7620
     tatcgttaag acagattaaa gaatgtgaca cctcgtccga catgccaaaa aacgttacgg      7680
     tcacaattca ggtggtacaa caaaacgacg aagtaccaat aaaaactatt tcttgtaaaa      7740
     ttgaagtttt taggctcgtt caaaaatgtg cttggttaag tgatttgcaa accgtcaaaa      7800
     attcgattgc aactttttac ccagatatat ctataaacga atgcaaaaca atgatagata      7860
     ctaaatcgta ttctaagtat agtaatatgg tagatttaaa tattaatggt tttactgaga      7920
     gaagtacttt acttgccgga aaagtagaaa ataatggaaa atgccgaggt gatgattatt      7980
     cagattggtt tggttcctat agtgacgcca ttgtmcatgg aacggtaaaa ttcaccttat      8040
     atgagtcaga agcgatgttc aatccctctt tgaatgaaat ttatttgcaa acaggtgtaa      8100
     aatgtgtgtt cactgcaggt aaatgttttg accctgtcag aggacataca ttttgggacc      8160
     ctgttgtaca agataaatgt gataataaac attattccgt actatacgaa ggacctgcat      8220
     tcaggtttaa tgattcaaat agcttagacc ccatatcgta cctagttgac gaagaagacg      8280
     tagcatttag cctaaaagcc ataaaaaata cgagaatttg tcatcaagac gctttcctaa      8340
     cagaacatgc gagattttac gtaataccta agagtgaata cggatttagt tttgaaaaaa      8400
     ctacccgaaa aataaccgcg gaacttttaa cttattttaa catcaaattt gtatttttgg      8460
     aaaaacattt ggcaacatct attcgtcaac tatatacgtc tcttaaatta gccaactgcc      8520
     aattagaacg tcagttatta gagcatcatt taactttagc catccaccat cagaatgatt      8580
     ttgcttttct tagaggtgga gggcctggtt acactgcagt cactatgggt gaagttacct      8640
     atttgatcca atgtagacca gttccagtag aactacgttc tacgaatatt tgctataatg      8700
     aaattccagt gctctacagt aatcagagta tgtttttagc tccaaggact agaattctaa      8760
     cctcaaaagg cacagaaata gattgtacac cccatcttcc tgtgaaattt gagattaacg      8820
     gtcaatggta tgcttttagt cccacagtca cagtaactca acctccaaat gagctagaat      8880
     caaaattttc tgtaaattgg acctatgaaa atccaaagaa cctattaaaa gcaggcattt      8940
     attcacaaga ggatatcaaa gcttatcagc gacgcatttc atatccactt gaaagtgctg      9000
     ctgtgcaaac agctctgatt cgcgaagctt taggataccc tcaggctgat agaggcataa      9060
     aatttgaaaa tttcttaaat gaagcatcct ttgaaactat attgcaaaga actacacata      9120
     aagtttgggg cgctttttat aaaattggca caattacttc aggtttaatt ggaataatgt      9180
     ttgtgataaa aatggttaaa acgtttcttg atatgctatt ttttggaaaa ttattgcacg      9240
     aaattttcgg ctggtcttgg agactcatag cagcatcttg tgattctgtc gctaattatc      9300
     tgattcacag tcaccatgtt aaaaaacagc gacctccagc ggaaggtttc gtcaatatgc      9360
     aacaaattac acattcatct cctccgccaa tatatgtttc aaattaagtg aaacttttgg      9420
     aacaattttg atttcagaag aattctcatc tttctcaaaa tgcaaccgca gctaatattt      9480
     aacatcgtaa tgcgacgttt tagggagaag tgttatgagt ttgaatctaa atattctcag      9540
     ttctccgtct ttggaccctc tttaactatc ctattattga aagaacggat agtaaaaacc      9600
     ataaatgatg agatcgcagg aatgaatgtt tccctcagag tttcgggaga taatataata      9660
     ttgactttcc caggagaaag caagccgttt ttcctaatac aaatgaatcc atgctcagac      9720
     gaagaacagc tcatgttatt agaactttcg taacttacac cactgttggc tcataaattt      9780
     aaaaccaaaa tcatctacag gtgacttcag taatcaaatc acattatttc gcatcatgat      9840
     ttctwttaca actgcttctc tcaaattgac caaaaggtca tatattataa gaccctttct      9900
     tttatattct tttatctatg taktcgttaa gttttcawtt tccatttatt ccagtgttgc      9960
     cacttttgam ctttataact ctttcctttt tttacccgac ttcttgtcag tatttcatac     10020
     agaaagatgg taatactgta tttttcttat tttactgagg ttttacggcc ttattttttg     10080
     catttgccaw ttcttacagt gttgccactt ttgaacttta tacctctttc ttttttcctc     10140
     ctaacttcac tgtcagtctt ttatacagac agatggtact actgtttttt cttaggttta     10200
     tcggccttat ttttgcattt gccatttatt ccagtgttgc cacttttgca cttttaagtt     10260
     tttctttttt tacctaactc caaagttagt tttccttttt tattttaatt agtttttacg     10320
     gtattattct tttgcattcg ccatttattc cagtgttgcc acttttgcat tttataattt     10380
     tttttccttt tttccccaaa ctccacactt agtatcttat gcagatagat aacaatactg     10440
     ttttcctttt tattttagta gtttttgcgg aattmttttt gcatttgcca tttattccaa     10500
     tgccgccact tttgcatwat atatttttkt tcctacctca acagttagta tttcatacag     10560
     aaagatggca acgctgtttm ttcttttact tagttttaag gaattatttt tgcaccctac     10620
     tataatttca gcgcgttttt gttaatggga tggtcatcat aaccgtgtaa ttatattttt     10680
     ttttttcttt ccttttgtaa cgtttaacct ttgaacctta aatgagagtc atcttagtca     10740
     atttctatag attttacaac aattttttcc cctctctctt tatattgawt catctcacac     10800
     tgttttctca ctcaaccaga atawwwcctt tggagacccc ccccccccca atgtttttcc     10860
     ttgtacgtgt ttttggtgtg agaaagaaac ttttttcgtt cgcatacttt ttcccgcgcg     10920
     tccgttttta tctccgcgca tcgccttgca gctgcgtagt caagaagaga ccacttcaac     10980
     cacttcaatc agttcttcga cggatcttca ctctgaattt gactcatccg agtcacccct     11040
     tcatgtgacc cgtacacttc aacatgtcac aatcaaattg ggatgacttc aatacataaa     11100
     tcagtcgaat aatgatgttt tcgtctgaaa agacatagcc tctatctctt cctggttttt     11160
     ggtccgacgt cagtctcttc gtgctcgcgg ctatgaatcg tcctttctct actgtgcccg     11220
     gtgattcaat caaaaacctc actaaagcat ccgacgcgag tgtacagtca aattttcatc     11280
     gcgaaaacat cccaacagcc gttccctctc taccccccgt gcctcctctt ttgtccccca     11340
     tgtcgtcccc agagcattac caaccttcaa cttcttcatt atcagacatt ccactcccct     11400
     catacatccc tacccccatt aaaaacctgc cgaaaaccct gcctgccatt ccacctttcc     11460
     gcataaaaac caaacccgtt acagtcacat ccattcctaa aaaacaatcg gctccaatca     11520
     gtgcgacaaa gactctggca tcaccgctat tcaaactgcc gttgccatct gttccaacaa     11580
     aaaagccatc ttttgagcaa gccttgttaa acagtgctat tccgacgaaa tttaagcgtc     11640
     ggcatgtagc atcttcacaa caaaaccagc ctcaagtgac aaaaccatcg cctcaagtca     11700
     caaggccact gccgcttatc aaaaagtcag ttccgctttt gtcacagccg ctgtcacaac     11760
     cgttgccaca gccgctgcca caaccgttgc cacaaccgat gccacaaccg ttgccacaac     11820
     cgctgccaca gccgttgcca caaccgctgc cacaatcgct gccaccccct ctcatctcag     11880
     cgaagccgca aatttcccag ccaaagaaga aacgtatgag aggttgccgg gctggcaaat     11940
     tcgtgcagtt gaaaaggctg cagaaagctc ggaagaagct ggcaacttca gcatccaacc     12000
     agtcaaacaa aaacaacata aaaccaaaaa accattcacc agtaagccac atcaacttta     12060
     ataatttgtg aatatttgta aaagtgtaca acagttacat ctaagtgact tttcggtgta     12120
     aattatacta tagttcgtct tcgctcgttc tggttttggc caaactctcc tccggaactt     12180
     ttacttttta gtgcattttt ttctcaagtg tctatgcata taactatata ctcgcgtgtg     12240
     cttcttgtgt caaatcgtgt tcgcgttcgc ggctgaagtg tacctgccaa ccttttttct     12300
     caggtatttt agtaattttt ctttctctcg ccaacttaca cattaatttt ttctcccccc     12360
     cccccccccc gcccccactt atttttctac tttcatgttt tctttccttt cagcaatttt     12420
     ttttctctca taaaggtgac tccattacat ttagattgtc ttttcattgt tttcttttct     12480
     actagtgtat tcgtgtatta catgcttctc aagcatacgt atttcgtata ggttttaatt     12540
     gtaaatgacc atcccatcac agcgcacctc aattctttca tgggtaaaac cctactttcc     12600
     cagtgcatac ctcccagtac attcctatag tctttgaaat tacgttgtaa tttcaccgag     12660
     catgataga                                                             12669
//
ID   Gypsy-57_TrVa-LTR repbase;    DNA;    INV; 2503 BP.
XX
AC   .
XX
DT   05-AUG-2021 (Rel. 27.01, Created)
DT   05-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-57_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2503
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 361-361 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2503 BP; 650 A; 595 C; 538 G; 720 T; 0 other;
     tgtgaggatt gtgcgtgtat ccgtgtatgc acactgtaca cacgcccagt caccatatgt        60
     atcagctcta atgatttgaa ttgcgcgcta ctcaacactt ttcatacagc gcgccaacgt       120
     cgttccatcg atcttccacc aagcatctct tatctaagat gatgcaatga ctgggagatg       180
     tgcattgtga tcgaaggagc atctcgtgac tcatgacttt tccctctccg caccgccgaa       240
     attgtgtggt ggggccgtct gatcgcgggc tcccgcgact atataagggc aaatcgcagc       300
     cgaaaaatta tcttatttgt tctgtgtctc tctctgtttc aacatgtaag ttcagttgag       360
     ccgtgtgctc tgcttttagt tcgtaagtta ggttaggttc tcgggcgcga tgtgtgcgtt       420
     tatccgcatt gtaacccact ggcgtcgtgt gtgtgaaagc cacgtcggtc caggacccct       480
     ttgagtttgt gaactgtttc acttatatca tcgtcacgcg agtttttaaa gttaaattgt       540
     gtggtatgat caagtaagta ctagtctatg tcaccagcgc aacgttaaag cagcaaagtc       600
     ttaaatgcta ggcgctacgt tggagcatcg tgtaattgtt tggcgcaagt ttcaaagctg       660
     tccaccttta aattctggcg ctgttgccgt tcaaatataa ttaatctgcg cgacaggcgg       720
     caaagtctta aatgctaagc gccgttgccg catagcgcga cagcgtccaa attctggcgc       780
     tgttgccgtt caaatataat taatctgcgc gacacaaggc ggcaaagtct taaatgctaa       840
     gcgccgtgtt gccgcatctt acttatatta gcgcgacata gctgtccggt gtttaaatgt       900
     tggcgctcta gccgatcatc actcacctgc gcaaccatgg ctgcaaagtc ttaaatgcta       960
     agcgccgtgt tgccgcaccg tgcttataca tgacgagtaa agccgtccac tttaattact      1020
     ggcgctgttg ccgtttctgg atattacaac tgcgcgacaa atggctgcaa agtcttaaat      1080
     gctaagcgcc acgttgccgc acttcgttaa taccagcgcg actaagccgt ccggaattaa      1140
     atgctggcgc tcatgctggt tacgtattac tcacctgcgc aaccatggcg gcaaagtctt      1200
     aaatgctaag cgccgtgttg ccgcaccgtg ttgatactaa cgcgataatc aaaagcagac      1260
     agattttaat agcaggcgct cctggccgct taagtattat tcacctgcgc aaccatggcg      1320
     gcaaagtctt aaatgctaag cgccgtgttg ccgcaccgtg ctaataccat agcgctagtt      1380
     tggctgtcct ctcttaatta ctggcgctat tatcgtccaa acacttatca cctgcgcgac      1440
     gttccatagc tacacagcct taaatgcaag acgctgtgtt gccgcatctt atcggtaatt      1500
     cctccaatcg acatagctat cacagttact tgctgccgct gttgctgctc aagtactgtt      1560
     cacctgcgcg ataatctatg gctgcaaagt cttaaatgct aagcgccgag ttgccgcaaa      1620
     gtgttacagt attttggcgc gacattcata gctaccacat ttaactgctg ccgctgattg      1680
     gcgagtaagt attgataagc tgcgcgacat aaatagcagt ccgactttaa ttagttggcg      1740
     ctgttgcagc tcagtgacaa aattcataaa gcgcgactct tacagcagac cgggtttacc      1800
     accctggcgc tagttgcagc tcagtcccaa caccgactct atgtattact tggtatttta      1860
     gttagacaaa ctgcagcgaa aggcgtatga catacgtgag cagaggttgc cctcgaagga      1920
     caaatgagtg gatttgtgag caattgagtc gcagcactcc atttgtgaaa ttaggtagat      1980
     agccatgtga gcgttatagt cgcagtatct cctaagatta taggccatgt tatgatgagt      2040
     catatagcgc aatatgacgc atcgtagcat gatgaacttt aagcatcaaa cttacattca      2100
     aaatttaaag tatgaaaatg aatttatttc gccccctaat aatttatatc gccccccaat      2160
     tagactccag attgttacac aatattttga gggttaatat ttgtgtaacg ccataattgt      2220
     aaaatgttac tccatgaaag aaatattaaa aatatctaaa tttgcactgt ttcagtctga      2280
     gttcaagtgt tttctcaatt cctcccatct tctacctaca ttcagcgaac ttctacatat      2340
     tcagctcgcg acatcttaaa cttcaattat tcattattat tataattatt attataactg      2400
     ggagggatgt aacctagtaa tccattaata gataggggtc tccaaacgcc ctgacaaacg      2460
     taaccctcac attggtgagg gcctgacaac cctaaccctt aca                        2503
//
ID   Gypsy-588_AA-I repbase;    DNA;    INV; 5804 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-588_AA_;
KW   Gypsy-588_AA-LTR; Ty3_gypsy_Ele61; Gypsy-588_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5804
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4858-5337] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           812..2071
FT                 /product="Gypsy-588_AA-I_2p"
FT                 /translation="MNNGESEIELLIGQIHKIKTNLKKAPFRKYLKFTLDE
FT                 KLRNVKLIYKNITDLLLENEARIGSSHFNFLIKAARQEFDETLILLNTKLK
FT                 HYKKSVSCKSVVYAVIFNNLLKKCIARNVTTMPFDIKTATSIVQVYDGTSE
FT                 NLDAYVDSANLLKDYVAADQVATAVRFLKTRLTGKARLGLAENLNTIDALI
FT                 DDVKQRCAEQITPANIIAKLKTTKQKGDTNNFCDEIDKLTNKLKSIYVGQG
FT                 IPDGVAKTMATKAGVDALINGTTSYETKIILKAGTFSNINEAVQKVQENAT
FT                 PTAANQQNSSQIMTYGTHKHNNHTRNNRGRRERNQNAQRGRHTYHRYQGHF
FT                 LNRTPQNYGFNRGGRRDQRPRQMFVTNAEQIYPMPQNMPRMQNLPQQIPIP
FT                 TAGQPQNVNFLGQANQGPSPQQQFIR"
FT   CDS           2113..5688
FT                 /product="Gypsy-588_AA-I_1p"
FT                 /translation="MTNSKCTFILDSGADVSLFKVTKVPAMQIVDFNKKLR
FT                 ITGVTEGVTETIAEAQTSVTFDNNLKLVHSFQLVSENFPIPTDGILGRDFL
FT                 VKFRCTIDYDNWLLNFNFQNHSICIPIEDSINNSIILPPRCEVIRRLPNFS
FT                 VTEDSIVLSQEILPGVFCGNTIVSSNSPYIKFVNTTQSQVAISNFHPICEP
FT                 LHDYVRVNKPTENLAMKKERIQNIFSKINFNEIPSYVHSSLKKLIEKYSDI
FT                 FSLENEKLSHNNFYSQNILLNDQVPVYIPNYKTIHSQGDEMAKQIQKLLDD
FT                 DIIEPSVSPYNSPILLVPKKAGNNSKKWRLVVDFRQLNKKVLADKFPLPRI
FT                 DIILDQLGRAKYFSTLDLMSGFHQIPLDQESRKYTAFSAPNGHFHFKRLPF
FT                 GLNISPNSFQRMMTIAMAGLNPECAFIYIDDIIVIGCSENHHFQNLTTVFE
FT                 RLRHYNLKLNPAKCKFFLNEVTFLGHKVTDRGILPDDSKFEALKNYPKPNN
FT                 VDEVRRFVAFCNYYRKFVPNFADIARPLNALLKKGVQFQWTDSQEQSFQQL
FT                 KQTLMEPYILRYPDFSREFILTTDASNYACGAVLSQRYTEGDFPIAFASRS
FT                 FTQGERNKPTIEKELAAIHWAVNYFKSYLYGRRFTIKTDHRPLVYLFNMKK
FT                 PTSKLTLMRLDLEEYNFNIEFLAGKSNVCADALSRIPLNSDDLKSLSVLVV
FT                 NTRAMNRKKLNDTTKFDDSQLADSETDHLTAWQTENPSEVRKYLKVGCEVH
FT                 HNQLKVKLFNNNYNKMLQTITIQLYDENTNGSQALELALLELGKLLNHYKR
FT                 TMVAISLQDELFKSFASETVKEIANRAISNYQLVLYNPPTFIQNVDKINEI
FT                 LVNNHMTPTGGHIGQHKLYLKLREKFTWKNMKLEISNFVKNCEKCKINKVN
FT                 RHTKEPVIVTSTPFKPFETISIDTAGPFGITNNRNRYILTIQCNLTKYIVL
FT                 APVPTKEASVMARALVENFILIYGNFLQLNSDQGTEFNNDVFEQICKLLEI
FT                 KQTFATAYHPQTIGALERNHRCLNEYLRSFTNTHNSDWDDWTKFFAFSYNT
FT                 TPNIEHGYTPYELVFGRKATLPHDLQDNQSMINPVYNPDQYYQELRYKLQT
FT                 SNSNARNKLIFQKEKRKNVCNQNINKIDLNIGDLVYLTNENRKKLDPFYIG
FT                 PFTVTKIADPNCTVKHNNTHKETIVHKNRTIKI"
XX
SQ   Sequence 5804 BP; 2181 A; 1059 C; 990 G; 1574 T; 0 other;
     tggctgaccg cgaacaggca accgagcctg aagacttatt caatagtcaa ttaaaactgt        60
     aaaaagtgcc aagtggaagc gaaaaatctt gaaaagtgga aaaagtttaa attataaaat       120
     aattgtgaag tgagtaccca caatggggaa taataaatcc aaaactgctc agaattcagg       180
     ggacccgcaa gtccaaattc tgaatgaact tgcaattcat gaagagtatc acgccgacca       240
     cgagtttaaa ctcaacatca ttttagcatt agtcggtcta cagttagcag tgatgtttta       300
     ccaactgtac aaattacata ccaaaaggca agcaatgaag gctgctagat caatagccaa       360
     catgcaaaac cctgcttagt gcctgaaaaa gaactcgagt aagctgcaag tgaaatacga       420
     acaattatga aaaaccgtcg aagtggaata agaacagttt cgtgacccgt tagtatacac       480
     cgttggcgtt tatagtgatg aagtgaaagc acaaataagt gcaaaaatca aacaaacaaa       540
     tcaactgcag gcgagaccac ggtcgacagg agtcgaccgg cgggattaga aagcgcatgg       600
     gctcagcgcc aacacaaaca acaacaacaa cgatgtgatg caacgagacg ccgaggatcg       660
     tatatcgagc gacaaccggg aagctacgat ataaccgtat acaattttat aaggtaacgt       720
     aaacaaatca acggatgtgt ttttttttta ccagtggaaa ataatactta gaagtaatgc       780
     tttgatcgtc gaacaaatat taatatttct aatgaataat ggtgaaagtg aaatcgagct       840
     tctaatagga caaattcaca aaattaaaac aaacttgaaa aaggctccat ttcgaaaata       900
     tttgaaattc acactcgatg aaaaattacg aaatgtaaag ttaatatata aaaatattac       960
     ggaccttctc ttagaaaatg aggcgcgtat cggaagctca cattttaatt ttctgattaa      1020
     agcagctcgt caagaatttg acgaaaccct tattttgtta aatacaaagt taaagcatta      1080
     taaaaaatcg gtatcttgca agtcggtggt ctacgccgta atatttaaca atttactgaa      1140
     aaagtgtata gctagaaacg taacaacaat gccattcgac ataaaaacgg caacttccat      1200
     cgtacaagtg tacgatggaa cgtctgaaaa tctagacgcc tacgtggatt cggcgaattt      1260
     attgaaggat tatgttgctg ctgatcaagt ggcaacagca gtaagatttt taaaaaccag      1320
     actgactgga aaagccagat taggcttggc ggaaaatctt aacacaatcg atgctcttat      1380
     cgatgatgtc aaacaaagat gcgcagaaca aattacacct gcaaacataa tcgcaaaatt      1440
     aaaaactaca aaacaaaaag gggacacaaa taatttttgt gacgaaatag acaaactaac      1500
     caacaagttg aaaagcattt acgttggtca aggcatcccg gatggggtgg ctaagaccat      1560
     ggccacgaaa gctggagtag atgccttaat taatggcacc accagctatg aaacaaaaat      1620
     tatcttaaaa gccggcacct tctccaatat caatgaagcg gtgcagaaag tacaagaaaa      1680
     cgctactcca acagcagcca atcaacagaa ctcttcacaa attatgactt atggtacaca      1740
     taagcataat aatcatacca gaaataatcg gggccgacgt gaaaggaacc aaaatgcaca      1800
     aagaggaagg catacttatc acaggtatca agggcatttt ttaaatcgaa cccctcaaaa      1860
     ttacgggttt aatcgaggcg gtcggcgaga ccaacgacct cgacaaatgt ttgtaacaaa      1920
     tgctgaacaa atttatccta tgccacaaaa catgccacgt atgcaaaacc tacctcaaca      1980
     aattccgatt ccgacagcag ggcaacctca aaatgtaaat tttttaggcc aggcgaacca      2040
     gggtccatcc cctcaacaac aattcattcg ataaatttaa atgctgtaaa tttcgtaacc      2100
     ttatatgttg aaatgacaaa cagtaagtgt acatttattt tagatagcgg agctgatgta      2160
     tctctgttta aagttacaaa agttcccgca atgcaaatag tagattttaa caagaaactt      2220
     agaataacag gtgttacgga aggagtgacg gaaactattg ccgaagctca aacttctgta      2280
     acattcgaca ataaccttaa attagttcac tcttttcagt tagttagtga aaatttccct      2340
     atacccacag atggtatact tgggcgtgac ttcttagtca agttcaggtg caccatcgac      2400
     tatgataatt ggcttttaaa ttttaatttt caaaatcatt caatatgcat acctattgaa      2460
     gatagtatta ataatagtat aattttacca ccaagatgcg aggtgattag aagattacca      2520
     aattttagtg tgaccgagga ttcaatcgtg ctctcacaag aaatacttcc aggagttttt      2580
     tgtggaaaca ctattgtatc atcaaactca ccgtatataa aatttgttaa tacaacgcag      2640
     tcacaggtcg caatctcaaa ttttcatcct atatgtgaac ctttacacga ttatgttaga      2700
     gtcaataaac ctacggaaaa tttagctatg aaaaaggaaa ggatacaaaa cattttttcg      2760
     aaaatcaatt ttaacgaaat tccttcatat gttcactcct cgttaaaaaa gttgattgaa      2820
     aaatattctg atattttcag tttagagaac gaaaagttat ctcacaataa tttttattct      2880
     caaaatattc ttctaaatga ccaggtacca gtctatattc caaattacaa aaccattcac      2940
     tcgcaaggag atgaaatggc aaaacaaatt caaaaacttt tggacgatga tataatcgaa      3000
     ccatcagttt ctccgtacaa ttcgccaatt ctcttggtac caaagaaagc tggcaataat      3060
     tcaaaaaaat ggagattagt tgtcgacttc cgacaattaa ataaaaaagt tttggcagac      3120
     aaatttcctt tgccacgtat tgacataatt ttagatcaat tagggagagc aaagtacttc      3180
     agtacgcttg atctaatgtc tggttttcac cagataccat tagaccaaga gtctagaaag      3240
     tacacagcct tttcagcccc taatggtcat tttcatttta aaagattgcc cttcggttta      3300
     aacatatcac ccaatagttt tcagcgaatg atgactattg ctatggcagg attaaatcct      3360
     gaatgtgcat tcatttatat cgatgatata atcgtcatcg gctgttcgga aaatcatcat      3420
     tttcaaaatt taactacggt gtttgagcgt ttgaggcatt ataacctcaa attaaatcct      3480
     gcaaaatgca aatttttctt aaatgaagtg acatttcttg gtcacaaggt aacggataga      3540
     ggcatccttc cagacgattc taagtttgaa gccttgaaaa actatcccaa acctaacaat      3600
     gtcgacgaag tacgtagatt tgttgcattt tgcaactact accgaaaatt cgtaccaaat      3660
     tttgcggata tagctcgacc attaaatgca ttgcttaaaa aaggagtgca gtttcaatgg      3720
     acagatagtc aggaacaaag ttttcaacaa ttaaaacaaa ccttgatgga accatatatt      3780
     ctgagatacc ctgatttttc acgggaattt attttaacca cagatgcatc aaactatgca      3840
     tgtggagcag ttctttctca gcgttatact gaaggagatt tcccaatagc ttttgcgagt      3900
     agaagcttta cgcaaggcga acgcaataag cctaccattg aaaaagaatt agcagcaatt      3960
     cattgggctg ttaattattt taaatcgtat ttatatggcc gaagattcac aattaaaacg      4020
     gatcacagac cattagtata tttatttaac atgaaaaagc caacatcgaa attaacgttg      4080
     atgaggcttg atttggaaga atataatttt aacattgaat ttcttgctgg aaaatctaat      4140
     gtttgcgcag atgcattgtc gcgtatccca ttgaactcgg atgaccttaa atctttatct      4200
     gttctagtgg ttaacactag agcaatgaat agaaaaaaat taaacgatac aactaaattc      4260
     gatgattcgc agttagcaga cagtgagact gatcacctca cggcttggca aactgagaat      4320
     ccatcggaag ttagaaaata tctgaaagtt gggtgtgaag tgcaccacaa ccaactgaaa      4380
     gttaaattat ttaataataa ctacaataag atgcttcaaa cgattacgat tcaactatat      4440
     gacgaaaaca caaatggaag tcaagcatta gagcttgcac ttttagaact tggaaaatta      4500
     ctgaatcatt ataaaagaac catggtcgcc atctctttgc aagatgagct attcaaatca      4560
     ttcgctagcg aaactgttaa ggaaatcgca aatagagcca tttccaatta ccagctggta      4620
     ctgtataatc caccaacatt tatacagaat gttgataaaa ttaatgaaat tttagttaat      4680
     aaccatatga cacctacggg aggtcatatt ggtcaacata aactttattt aaaattaaga      4740
     gaaaaattta catggaaaaa catgaaatta gaaataagca attttgttaa aaattgcgaa      4800
     aagtgtaaaa ttaacaaagt gaacagacat actaaagagc ctgttatcgt aacttcaacc      4860
     ccttttaaac cattcgaaac aatttcaatt gataccgcag gaccattcgg cattacaaac      4920
     aatagaaata gatacattct aactatacaa tgtaatttaa cgaaatacat tgtacttgca      4980
     ccagtaccaa caaaagaagc ttctgtaatg gcaagagcat tagtggaaaa ttttatcttg      5040
     atttatggaa attttcttca attaaattcc gatcaaggca ctgaattcaa taatgatgtt      5100
     tttgaacaga tttgtaaatt attagaaata aagcaaacat ttgcaacagc ctatcatcca      5160
     cagacaatcg gagctttgga aaggaaccac agatgtctca atgagtatct gagatccttc      5220
     accaatactc acaattcgga ctgggatgat tggacaaaat tttttgcctt ctcttacaat      5280
     accacaccaa atattgaaca tggctataca ccatacgaac ttgtttttgg acgaaaagct      5340
     acactaccgc atgacttgca agataaccaa tcaatgatta atccagttta taatccagat      5400
     caatattatc aagaattacg ctataaacta caaacatcaa actcaaatgc tagaaacaaa      5460
     ttaattttcc aaaaagaaaa acgtaaaaat gtgtgcaatc aaaacatcaa taaaatcgat      5520
     ttaaacatag gagatttagt atatctgaca aacgaaaatc gaaaaaaact tgacccgttt      5580
     tacataggac cattcacagt aaccaaaata gcagatccaa attgtacagt aaaacataac      5640
     aacactcata aagaaacaat agtccataaa aatagaacaa taaaaatcta aataaatgat      5700
     agcaattaaa gaaaacataa ttaacattct agatgaggta cttggaggat aggtcataac      5760
     gaatgattcc atttttatta catcattctc caaaaggggg aaga                       5804
//
ID   Gypsy-588_AA-LTR repbase;    DNA;    INV; 668 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-588_AA_;
KW   Ty3_gypsy_Ele61; Gypsy-588_AA-I; Gypsy-588_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-668
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 668 BP; 215 A; 160 C; 95 G; 198 T; 0 other;
     tgtagagtat ttagttacat catatcataa atcacctgac ttcttcacca catgttctgt        60
     gattgtaact ttcccacagt cacagaaccc gacttgacaa aaacgtacaa ctttcatata       120
     atcagctaat tgttgcttgg ttacaaaacg acaatcagca ccctaaaata atttatagct       180
     tatactcata ctcaaataac atagaacgac gacccacgtc gttgtcatgt attctcaaat       240
     gtcacatagc aatgacccat gtcattggca cttcagaaat cacttcaaat gcaaaaccca       300
     catgaaccgt aactcgactc cttcagcata gcactccgtt cccaggcaat aatacttgca       360
     tacacataaa tgacttagac tgctgccaag tgcatcacgc aacaagcgtt gatgccttat       420
     tcgcttttac ctctctctct ctctctctcc ttcttcatta ttctatcctt gttgcaaacc       480
     tcttattgat ccctgattgg tttgcctaaa tgaaaagtaa ctccaagcac ctcccactag       540
     gataagcatt gtgtagagaa caaatctatg tatgtagaat taagtgattt gtaaacttga       600
     agattgaaat aaagacagat tttattcaac agtagactcg agcagttgat atccggaaag       660
     atatcaca                                                                668
//
ID   Gypsy-589_AA-I repbase;    DNA;    INV; 4185 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-589_AA_;
KW   Gypsy-589_AA-LTR; Ty3_gypsy_Ele15; Gypsy-589_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4185
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3275-3757] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..4185
FT                 /product="Gypsy-589_AA-I_1p"
FT                 /translation="MNATTFSSQTGQECSSGGRGDGLSANLRQENNVHNRQ
FT                 AVSNCVCQEQRNRLGPEFMVSNNNFRFEEVAAFLPFFAGHSDEDINHFIAT
FT                 VENTKRALGINCEIMKLVVIKQLKGNARDWLHTRADFMLKTYEETLDDLRQ
FT                 MYGSAVNGFELRKRLERIRWFGREPFADYCQSKKLIAQKLNLGEKELVEYI
FT                 VEGISDHNLKNQARIQNFQTVTEINQAFRMVKMEEQKSFRKPTVCYSCNQP
FT                 GHLAVNCKKALDQKQSKSTSSFWKSNEGAKKQQAIQRPIINAVMNDHQLED
FT                 EVTEEGYDGLVEFKLSNFDYTFKALFDTGSPISLIRRGLVEKQNITKNNES
FT                 KRYRGIGGKRLKTLGESINIVHIQNISFRINFVVVPDKVLGSHDAIIGRDV
FT                 IMRSRIRTIINQNIRLYSNIDRSSRPETSTKTVNIFNINSDVSELKKENIG
FT                 YITNDQLAQFLEIFKTNYSCYKKPLIPETKYEMEIVLKKGESFHFKPRRLS
FT                 FDQKQKVELKIKELLEAGIIKESNSPFASPIVLIPKKNNEIRMCVDFRKLN
FT                 KDTVRDNYPLPVIEDIFDSLRNKTYFTILDLKSGFHQIKLASASTKFTSFV
FT                 TPSGQYEYLRVPFGLCNAPAVFQRYINKIFKHLIEKGKMVVYLDDILIASE
FT                 TFDEHLEILQQVFETLSKNLLELNLEKCKFMFEEIDYLGYTLNEKGRKLNN
FT                 THIESISKFPVPKNVKDVQRFLGLTSYFRKFVQNFASIARPLYNLLKKDSK
FT                 FLFSKEHSESFEKLKQKLITAPILAIYNPSAETQLHCDASSYGFGAILLQK
FT                 QGDGNFHPVCYFSKITDNYESKLHSFELETLAVVHALKRFHVYLAGIKFKV
FT                 FTDCNALVQTLSKKELNPKISRWALLLENYNFDLEYRDESKMKHVDALSRQ
FT                 NMSNKFVDKQLSDVDTINVLNESEIESNIILAQEQDSKIMNIKNLLERSNF
FT                 PNFLLINGVLFRKDGEKNLLVVPKLMIDNVIRLHHDNCGHIGIEKTIHEIK
FT                 KYFWFSSMRKIVKKYIQNCLTCIFYNPCEKKQGFLKLIEKGNQPFNTIHID
FT                 HYGPIQLPSSNRQKYVLVIVDAFTKFTKLYSTKSTSVDEVIKHLSDYMNYY
FT                 SRPLRIITDRGSCFTSSKFETFVNVHCINHVKVAVRTPESNGQVERLNKTL
FT                 TPMLAKLCDESQQKWDKILNKIEYVFNNTFNRSVNNYPSILLFGIQQNSIE
FT                 NENYNIESFVKSKQFDLGKETIQEIRRKAQIKNKETQEYNKKMTDKKRIKC
FT                 TDYKEGDFVVLKANESHKLDAKFKGPYQIKKVLPNDRFVITDIDGFQVSSI
FT                 PFNSICSPNNMRKWMCNDVPDDGSIDEDIGFVRMPEV"
XX
SQ   Sequence 4185 BP; 1548 A; 617 C; 767 G; 1253 T; 0 other;
     tatcagaagt gggatattgc tgcgcagtca gaagacttcg gatgaattgg agcgttctga        60
     acaccggaga actaaggctg accggatact gcctgaggta gatgcaagag aatttgtagg       120
     aatcgttgca gaaggcacca tgaacgctac aactttttct tcgcaaactg gtcaagaatg       180
     ttcaagcggt ggacgcggtg atggattgtc tgcaaatttg cgccaggaga ataacgttca       240
     caatcgtcaa gcggtcagta attgcgtttg tcaagaacag aggaatcgtc tgggtcctga       300
     atttatggtc tcaaataaca attttcgttt tgaagaagtg gctgcttttc tgccgttttt       360
     tgcgggacat agcgatgaag acatcaacca ttttatcgct acagtggaaa acacgaagcg       420
     cgctcttgga ataaactgtg aaattatgaa gcttgtagta atcaaacagt tgaaaggtaa       480
     cgcaagagat tggcttcaca ctagagctga ttttatgctg aaaacatatg aagagactct       540
     ggacgatcta cgtcaaatgt atggatcagc tgtcaacgga tttgagctac gaaaacgttt       600
     ggaacgaatc agatggtttg gacgagagcc gttcgcagat tactgccagt cgaagaagtt       660
     gattgcccag aagcttaacc taggagaaaa agaattagtg gagtatattg ttgaaggaat       720
     ttctgatcac aatttgaaaa atcaagcaag aattcaaaat tttcaaacgg ttaccgaaat       780
     caatcaagca ttccggatgg tcaaaatgga ggagcagaag agttttcgaa aaccaaccgt       840
     gtgttattcc tgcaatcaac ctgggcatct agctgtaaat tgcaagaagg cgttagatca       900
     aaagcagtcg aagtcaacat cgtcattttg gaaatcaaat gaaggagcta agaaacaaca       960
     agcaatacaa agacctatta tcaatgcagt tatgaacgac catcagctag aagacgaagt      1020
     tacagaggaa ggatatgacg gactggtaga attcaaactt tccaattttg attatacttt      1080
     taaagcttta tttgatacag gcagccctat ttcacttata cgccggggat tagtggaaaa      1140
     acaaaacata acaaaaaaca atgaatctaa acgttaccgg ggtataggtg gaaaaaggct      1200
     aaagacgtta ggtgaaagca ttaatattgt tcatattcaa aacatttctt tcagaattaa      1260
     tttcgttgta gtaccggata aggtgcttgg ttctcacgat gctatcattg gacgggacgt      1320
     tattatgcgt tcaagaatcc ggactatcat taatcaaaat attcgacttt attcaaatat      1380
     tgatagaagc tcgagacctg aaactagcac taaaacggta aatattttta atatcaattc      1440
     tgatgtttcc gaattaaaaa aggaaaacat aggttatata acaaacgatc agttggcaca      1500
     atttttagaa attttcaaaa caaattattc atgttataag aaacccttaa ttcctgaaac      1560
     taaatatgaa atggaaatag ttttgaagaa aggcgaatca tttcatttta aacctcgtag      1620
     attatctttt gatcaaaaac aaaaagttga acttaaaatt aaagaacttt tggaagctgg      1680
     aataataaag gaaagtaatt caccatttgc cagcccaatt gtgttgattc caaagaaaaa      1740
     caacgagata agaatgtgcg tggattttag aaaactaaat aaagacacag ttcgcgacaa      1800
     ttatccttta cctgttattg aagacatatt cgacagttta agaaacaaaa catattttac      1860
     aattttggac cttaaatctg gatttcatca aattaaattg gcatcggctt caactaaatt      1920
     cacatcattt gtaactcctt ctggccaata cgaatatttg agggtccctt tcggtttgtg      1980
     taatgctcct gcagttttcc agaggtatat caataaaatt ttcaaacatt tgattgaaaa      2040
     aggaaaaatg gtagtttatt tggatgacat attgattgca agtgaaacat tcgatgaaca      2100
     tttagaaatt ttacaacagg ttttcgaaac attaagcaaa aatttacttg aattgaattt      2160
     ggaaaaatgc aaatttatgt ttgaagaaat cgattattta ggatacacat tgaacgaaaa      2220
     aggtagaaaa ctcaacaata cacatattga aagtatttcc aaattccctg ttccaaaaaa      2280
     tgtgaaagat gttcaaagat ttttaggact cacaagttac tttcggaagt tcgtacaaaa      2340
     ttttgcttca attgcgcgtc ctctctacaa tcttttgaag aaagattcca aattcctttt      2400
     tagtaaagaa cattcggaat cattcgaaaa gcttaaacaa aaattaatta cagctcctat      2460
     tttagcgatt tataatccat ctgctgaaac acaactgcat tgtgatgcta gttcttatgg      2520
     ttttggagca attttacttc agaaacaagg tgatggtaat ttccatcctg tttgttattt      2580
     tagtaaaata accgacaatt atgaatcgaa attacatagt tttgaactag aaacgttagc      2640
     agtagttcat gcgttgaaac gttttcatgt atatttggca ggtattaaat tcaaagtgtt      2700
     tactgattgc aatgccttag tgcaaacatt gtccaaaaaa gagctgaatc ctaaaataag      2760
     tcggtgggcg ttgttattag aaaattataa ttttgatctg gaatataggg atgaatctaa      2820
     aatgaaacat gttgatgctc ttagtcgcca aaatatgtcc aacaaatttg tagataaaca      2880
     attatcagat gttgatacga taaatgttct caatgaatca gaaatagaaa gtaatataat      2940
     tttagcccaa gagcaagata gtaaaatcat gaacattaaa aacttactag aacgatcaaa      3000
     ttttccaaat tttttgctaa taaatggtgt attgtttagg aaagatggag agaaaaactt      3060
     attagttgtt ccaaaattaa tgattgacaa tgttatcaga ttacatcatg ataactgtgg      3120
     tcacattgga attgaaaaaa caatccatga aattaaaaaa tatttttggt tcagtagtat      3180
     gaggaaaata gtaaaaaaat atattcaaaa ttgtcttacg tgtatatttt ataatccatg      3240
     tgagaaaaaa cagggttttc tgaaattaat tgaaaaagga aatcaacctt ttaatactat      3300
     tcatattgat cattacggtc caattcaatt gccttcatca aatcgacaaa aatatgttct      3360
     agttatagtt gatgctttta ctaaatttac caaattatat tcaaccaaat ctactagtgt      3420
     agatgaagtg ataaaacatt taagtgatta tatgaattat tatagtagac ctttacgaat      3480
     tataactgac cgaggttcat gttttacaag tagtaaattt gaaacatttg ttaatgttca      3540
     ttgcataaat catgtgaagg tagcagtacg aacacctgaa tcaaatggtc aagtggaacg      3600
     attaaataaa acattaactc caatgcttgc caaattatgt gacgaatctc agcaaaaatg      3660
     ggacaaaatt cttaataaaa tagaatatgt tttcaataat acgttcaata gatctgttaa      3720
     taattatcca agtattttgt tatttggaat acaacaaaat tctatagaaa atgaaaatta      3780
     taacatagag tcttttgtaa aaagtaaaca gtttgattta ggaaaagaaa ctatacaaga      3840
     aattcgtaga aaagctcaaa ttaaaaataa agaaactcaa gaatataaca aaaagatgac      3900
     agataaaaag agaatcaaat gcactgatta caaagaaggg gatttcgttg ttttgaaagc      3960
     aaatgagtca cataaattag atgcaaaatt taaaggacct tatcaaataa aaaaagttct      4020
     gccaaatgat cgatttgtga taactgatat agacgggttt caagtttcga gtattccttt      4080
     caattcaatt tgctctccga acaatatgcg aaaatggatg tgtaatgacg taccagacga      4140
     tggaagtatc gatgaggaca tcggttttgt caggatgccc gaagt                      4185
//
ID   Gypsy-589_AA-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-589_AA_;
KW   Ty3_gypsy_Ele15; Gypsy-589_AA-I; Gypsy-589_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-141
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 141 BP; 52 A; 23 C; 27 G; 39 T; 0 other;
     tgtagtgaat gatattaatg tatttgatca aggtaggcac agacaatgac tcagagtagg        60
     caatgacagt cagtaaagtt aataaatgat cattctgtaa aaccacctta aacagagcag       120
     ttgtaattcc tgacctctac a                                                 141
//
ID   Gypsy-58_AA-I repbase;    DNA;    INV; 4563 BP.
XX
AC   supercont1.29;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_AA_;
KW   Gypsy-58_AA-LTR; Gypsy-58_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4563
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.29; Positions 1491546 1486984.
XX
CC   'AGTTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1246..4431
FT                 /product="Gypsy-58_AA-I_1p"
FT                 /translation="MAEVDLKFFNKWKPVLCDVDTGANTSLIGYNSLIELS
FT                 GDGDPSLLPSSFRLQSFGGNPIKVLGQVKVPCRRLGKNFRLVLQVVDVDHR
FT                 PLLSARASRELGLVKFCEAVSFTDANEPPSTSLSTEELLNIYRVEAQKSIE
FT                 EHPNLFTGYGKFPGTVTLEIDSSIPSCIQPPRRVPIAMRGKLKQELEALER
FT                 DGIIVKEPNNTDWVSNLVIVQRSGAGSGIRICIDPVHLNKALKRPHLQFTT
FT                 LDEILPELGKAKVFSTVDTKKGFWHVVLDKPSSKLTTFWTPFGRYRWTRLP
FT                 FGIASAPEIFQLKLQQLIQGLEGVECLADDLLIYGVGDTLEEALINHNACL
FT                 RKLLQRLDKHNVKLNHSKLKLCQTSVKFYGHVLTDHGLQPDEEKISAIRNF
FT                 ATPCNRKEVHRFVGMVNYLSRYIPNLSANMTNLRKLISETVAWRWTVSEEK
FT                 EFQTVKSLVSDISTLKYYDVSKPLVMECDASCSGLGVAIFQEDGVVGYASR
FT                 TLTATEKNYAQIEKELLAIVFGCIRFDQLIVGNPKVTVRTDHKPLITIFSK
FT                 PLLSAPRRLQHMLLSLQRYNLSIEFVTGKDNVVADALSRAPMRSSDPVEKF
FT                 EKLNVYRVFEEVSEMKLTNFLSIADARLTEIMNETAQDRTMQTIISYIQEG
FT                 WPKTVDRVPDNAKIFFNYRNELSTQEGLLFRNDRLVIPYVLRRKLVDCCHI
FT                 SHNGVEATLKLARANLFWPGMSAQIKDVVKECKICAKFSASQPNPPMQSHK
FT                 IPVYPFQMISMDVFFADYQGSKRKFLITVDHYSDFFEVNILKDLTPESVIA
FT                 ACKINFARHGIPQLLLTDNGTNFVNQKMAKFAGEWNFEQITSSPYHQQANG
FT                 KSEAAVKIAKRLMKKSEESGSDFWYALLHWRNIPNKIGSSPAARLFSRSTR
FT                 CGVPTSAVNLQPRIVENVPSAIEDNRKKIKFHYDRKTRSLPELETGSPVYV
FT                 QIHPETTKLWTPGIVSNRLNERSYLVNVDGTEYRRNVIHLKPRKEPESEDF
FT                 PPSTIASENQPQQTTTRPTEETECQITPHCDGKGGEASCETPTWKNKTTDS
FT                 SVLHR"
XX
SQ   Sequence 4563 BP; 1363 A; 962 C; 1101 G; 1137 T; 0 other;
     tggtgtcaga agccatcgtg agcttcagat cggttttacg gcaaacgtag tgaaaatcgt        60
     gagaaaatcg tacgaaaaca actgttcgga aagtcgcgtc ggatcggcgg ccattttgtg       120
     tcgattggtg aaaaagcgtg gtgatcctca tcaaaatgga tgccaaccaa ttcaagatgt       180
     tcatggaaca tcaaactaac attattcgtc aaatgttaca agggatacag agttccgtat       240
     caggagctgt gcagcagcag caaatacagc aaccgagtgc ctctgccgta caggtgccgc       300
     agccgtcgcc attgtctctg gatggcgata tggaggaaaa tttcgaattt ttcgagaaga       360
     gctggaatga ctactgcaga gctatcggaa tggatcgatg gcctcaggcg gaaaatccac       420
     agaaagtcag cttcttactg actttgatag gagaagcagc gagaaaaaaa tatttcaatt       480
     tcgagcttac cgaagcggag aaggcaaatc cgcaagcagc tcttgctgcc atcaaatcca       540
     aagtagtgac cacgcgaaac gtgatagtgg atcgtttgga cttcttttcg gcaatccaaa       600
     cgtctcgtga gccaatcgat gattttgtta cgcgtctcaa ggtcatggca aaacctgcga       660
     aactagaaaa tctggaaacc gagctgattg cgtacaaggt ggttaccgca aacaagtggc       720
     agcatttgcg aaccaagatg ttaacaatga ccgacatcac gttgtcaaag gctgtggatc       780
     tgtgccgtgc cgaggatttt tttttttttt taaatctttt tttgagtgta ttttaacgca       840
     cgagggctag ttctacacta ccgccgtgcc gaggagataa aagccaggcg gtcacaggaa       900
     cttggtacat cagcatctgg atcggaagtg aataaagtga gtaagaagaa gataagtgtt       960
     aaatcccagc ggtgcaaatt ttgtggtgat taccatgagt ttgttaaagg agagtgtcct      1020
     gcctttggca agaagtgtca tcgttgcaaa ggcaagaatc attttgaaaa agtttgccga      1080
     gctggtggga aatcgaaggg ccgcaaatct ggccggcgaa tcaaggaagt gaaagaagaa      1140
     agttctacgg aagaagaatc gtctgatacc gaatcatcat caagtgaaag tgaagaatat      1200
     gaaatcggta aaatttatga ctattcgagt cacggtggaa acgttatggc cgaagtggac      1260
     ctaaaatttt ttaacaagtg gaagcctgtt ctatgcgatg ttgacactgg cgcgaataca      1320
     agtttgatcg ggtacaatag tctgattgag ctcagtggcg atggtgatcc atctctgctt      1380
     ccatcgtctt tccgattgca aagcttcgga gggaatccca taaaagtgtt gggtcaagta      1440
     aaagtgccat gccgacgatt ggggaaaaac ttccgcctag tgttgcaggt ggttgacgtt      1500
     gatcatcgtc cattgttatc cgccagagcg tctcgtgaac tgggtttagt gaagttttgt      1560
     gaagctgtga gtttcaccga tgcgaatgaa ccaccgtcca cgtcgttgtc gacagaagag      1620
     ctattgaaca tctatcgagt tgaagcccag aagagcatcg aagaacatcc gaatctgttc      1680
     acgggttatg gcaaatttcc gggcacagta acactggaaa tcgacagcag tataccatca      1740
     tgtatccaac caccgagaag agtacccata gccatgcgag gtaagctaaa acaagaattg      1800
     gaagcactgg aaagggacgg aatcattgtt aaagaaccca ataacaccga ttgggtaagt      1860
     aatttggtca tcgtacagcg ttctggtgct gggtctggta tccgcatttg tatagatcca      1920
     gtacatctca ataaagcatt gaaacgaccg catctccaat tcacgactct ggacgagata      1980
     cttccggagt tgggcaaggc caaagttttt tcgacagtag ataccaaaaa agggttctgg      2040
     cacgtcgtcc tggacaaacc aagcagtaaa ttgaccactt tctggacgcc atttggaaga      2100
     taccgatgga cgcgtctgcc gttcggtatc gcttcagctc ccgaaatctt ccagttgaag      2160
     ttacaacagc tgatccaagg tttggaaggc gtggagtgtt tggccgacga tttgctcatt      2220
     tacggtgtgg gagacactct tgaagaggct ctaatcaatc acaacgcttg tcttcggaaa      2280
     ctccttcaac gtttggataa acacaatgtc aagttaaatc actccaagtt gaaactttgt      2340
     caaacttccg ttaaatttta tggtcatgtg ttgactgatc atggcctgca accagatgag      2400
     gaaaagattt ctgccatcag gaatttcgct actccgtgca acagaaagga ggttcatcgt      2460
     tttgtaggga tggtcaatta cctgagccgc tacattccca acctgagtgc caatatgacc      2520
     aatctacgta agctcatttc tgaaacagtt gcatggcgat ggacggtctc tgaagagaaa      2580
     gagtttcaaa ccgtgaaatc gttagtgtcc gacatcagca cgttgaagta ttatgatgtg      2640
     tctaagccgt tggtgatgga gtgcgatgca agttgttccg gcttgggcgt tgcaattttt      2700
     caagaagatg gtgttgtcgg atacgcgtca cgaacattga cggccaccga aaaaaactat      2760
     gcccaaatag agaaggagct cctcgcaatt gtatttggct gtatccgatt cgaccagttg      2820
     attgttggaa atccgaaagt cacagtaagg acggatcaca aaccgttgat caccattttc      2880
     agcaagccac tgctgtcggc tccacggcgc cttcagcata tgctcctaag tttgcagcgc      2940
     tacaatttgt ccattgagtt cgttaccggt aaggataacg tggtcgcgga tgcattgtcg      3000
     cgtgctccga tgagaagcag tgaccctgtg gaaaagttcg aaaaactgaa tgtttatcga      3060
     gtattcgaag aagtatcaga aatgaaactc accaattttc tgagtattgc tgatgctagg      3120
     cttacggaga tcatgaacga aacagcgcaa gatcgaacaa tgcaaaccat cattagttat      3180
     attcaagagg gctggcccaa aacagtcgat cgggtaccgg ataatgcgaa aattttcttc      3240
     aattaccgaa atgagctctc aacgcaagaa ggactgctgt ttagaaatga ccgtcttgtg      3300
     attccatacg tgttacgaag aaagctggtc gattgttgtc acatcagtca taatggtgta      3360
     gaagcaacac tgaagctggc aagagctaac ttattctggc cgggaatgag tgcacaaatc      3420
     aaggacgtcg tcaaggagtg taaaatttgc gccaaattct ctgcatcaca accaaatcct      3480
     cccatgcaga gtcataagat tccagtgtac cctttccaga tgatttcgat ggatgtattt      3540
     tttgccgatt atcaaggatc aaagagaaaa ttccttatta cagttgatca ttactcggac      3600
     ttcttcgaag tcaacatact gaaggatctg acgccggagt ctgtgattgc tgcttgtaaa      3660
     attaatttcg ctcgccatgg aattccacaa cttctgctga cggataacgg tactaatttc      3720
     gtgaaccaaa agatggctaa gtttgccggc gaatggaact ttgagcagat tacgtcgtca      3780
     ccatatcacc aacaggctaa cgggaagtcg gaagcggcgg tgaagatcgc caaaagactg      3840
     atgaagaagt ctgaggagag cggttccgat ttttggtatg ctctattgca ctggcgcaat      3900
     ataccaaaca aaattggatc aagcccagcc gctcgcttgt tctcaagatc aacccgttgt      3960
     ggtgtgccca ctagcgctgt aaatctgcaa cccagaatag ttgagaacgt cccatctgca      4020
     atcgaagata accgtaagaa aattaagttt cactacgaca ggaaaactag atcactacct      4080
     gaactagaaa ccggatcgcc tgtgtacgtt caaattcatc cggaaacaac gaagctttgg      4140
     acacccggaa tcgtttccaa taggctgaac gaaaggtcat atttggtcaa cgttgatgga      4200
     accgagtacc gacgaaatgt aattcacttg aagccacgta aggaacccga atcagaggat      4260
     tttccgccct cgacgatagc aagcgaaaat caaccgcaac aaacaacaac acgtccaacg      4320
     gaggaaaccg aatgtcaaat cacaccccac tgcgatggaa aaggaggaga agcatcttgc      4380
     gagacaccta catggaaaaa caaaactacc gattcatcgg ttctacatcg gtaaatagtg      4440
     aaccggttca gtttcacttt cacacgaaaa gcaatcgtcc taaacgagag cacaaactac      4500
     ccgacaagct gaaggatttt tatcttaagt gagaatattt tatttttttt aaagtgagga      4560
     gga                                                                    4563
//
ID   Gypsy-58_AA-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   supercont1.29;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_AA_;
KW   Gypsy-58_AA-I; Gypsy-58_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-202
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.29; Positions 1486983 1486782.
XX
SQ   Sequence 202 BP; 57 A; 42 C; 35 G; 68 T; 0 other;
     tgttgtagta ttggatagcc catcgcattc cattcataag cgcacactca cacactcttg        60
     ttcatgttgt tccactgtgt tggtagtttt tcctttcatc attcgtgtgc taacagtcag       120
     aatagcaagt caagtgactg taattgagtc cgtaataaat ctgaattact aagtaaaata       180
     cgcgttttat tgcaccaaaa ca                                                202
//
ID   Gypsy-58_AnFu-I repbase;    DNA;    INV; 4543 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4543
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2942-2942 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           419..4504
FT                 /product="Gypsy-58_AnFu-I_1p"
FT                 /note="SAP, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDVTAKIAELMESFTRIGLVKTCEAKNLSTSGTKEEL
FT                 AARIANAGETAEEGAEQSLLNSTGVGEFMDAQTVSDTARPAALNFNDVKDA
FT                 LPIFAGDGKGQDISKFVTEFEENALLFGWTDLQKLVYAKRLLTGPAKLFIG
FT                 SVGSLRSWKQLKDALAAEFREETKSVEVHDAMRKRKKKSDESYIEYVYAMQ
FT                 SLAKRGQMDEESICEYIVQGIDDDPRNKVCLMGASSLAELKVQFKKYEALK
FT                 SQLPNVRKERDTGRTKDMGRKCYQCGQTGHLSSTCNTKGVVQKCYNCGVPG
FT                 HEARACRNTSRPKCFRCGKTGHKANECKTKPMTSASSNLIVDDEEPTVSMQ
FT                 IGNCVLYSLFDSGCYFNLITNAAFLRIGAPAVENAAVELHGFGGKRTRASG
FT                 RFATDVSINANCYRGVPFFIVPDGTMKYEAVIGRESLRLFDAEITKDGVKL
FT                 TPRSERREKETTGIDGVLLVNDFEVNSDQEITVPIQYRDKINEYIENYKVV
FT                 HSDNHAEDSTVKLEIVPDENIQPFRHSPARLAYTEEEAVDRQVEEWLREGI
FT                 VRPSSSNFASRVVVVKKKDGTNRVCVDFRQLNAMVLKDGFPIPVIDEVLER
FT                 LQTARYFTIMDLANGFFHVPVEEKSKKYTAFVTKRGLYEFNRAPFGFCNSP
FT                 AVFIRFVNDKFKTLVSENVMDLYMDDIVIHGETDKECLEKTERVLTVAAAS
FT                 GLAIKWKKCKFMQRSVHFLGHNVCKGTISPGAEKTKAIRHFPRPKNVKAVQ
FT                 SFLGLTGFFRKFVEGYSLIARPLTDLLQKNEEFEMGEREINSFETLKQLLI
FT                 TEPVLRIYNRDAETEIHTDASKEGFGAVLLQKADGKLHPVMYWSKKATEGE
FT                 AKQHSYILEAKAIFLAVKRFRRYLLGINFKLVTDCIAFKQTLQKKEVPREV
FT                 AAWVMFLQDFTFRVEHRAGRKLQHVDCLSRYPYEVMNIAADVTIRIKQAQQ
FT                 QDETLVPIGELIAKGSCCGYTMKSGVIYKVVEGNELVVIPRSMEREIIQEA
FT                 HNNGHYSVNKTLHDIKQKFYIPHLEQKVRQVGNNCVQCILFNKKLGKKEGY
FT                 LHCIDKGDKPLHTLHIDHVGPMDATSKQYRYILTVVDAFSKFVWLFPTRTT
FT                 NSEETLRKLQIWSTIFGNPTRIVTDRGTAFTSNLFMDYAKTEGIEHVVCTT
FT                 GVPQGNGQAERMNRIILAIIAKLSAEEPSKWFKVVGKVQRAINSHNQASTG
FT                 RSPFELMFGTTMYNRPSEQLKQILEDEMQNSYDMERTQMRMEAREAIEKAQ
FT                 ACYKKQYDKKCKTEHTYGLGDLVAIKRTQFIAGKKLASEFLGPYEVIKVNR
FT                 NERYKVKRIGNGEGPNITTTNATNMKLWRYVAYNQDEMELEVTESGEENL"
XX
SQ   Sequence 4543 BP; 1405 A; 828 C; 1253 G; 1056 T; 1 other;
     tttggtgtca gaagtgggat agcgattaaa cagcgattcc cagaagagat aagtgcgaga        60
     acgattcgca ggataggcgt tggagacatc gtacggcgcg tgaccgttag cgctgtgtgc       120
     gcaagtttgg tgtcgtgtgc attggatagc tgtgtgcttc ccaggcaacg cttaccgcga       180
     aaatcggtgc tgtgtgcgcg aggatagcgt tgtgcttgca ggtagcgctg tgtgcgcaaa       240
     gtaggtgctg tatgcacgag tatagctgtg tgcattggga cgctgtgtgc ttcctagtag       300
     cgctgtgtgc gcgagagatt ggtgcgtgag tgtgcagagg ttgtgcgtgc gcttgttagc       360
     gctgtatagt agaaaacgtc ttgtgcgtgt gaacgttgtg tcgcgtgtgg actgaacaat       420
     ggatgtaacc gccaagatag cagagcttat ggaatctttc actagaatcg gtttagtgaa       480
     aacatgtgaa gccaaaaacc tttctacgtc ggggacgaaa gaagaattag cggcgcgaat       540
     cgctaatgct ggtgagacgg cggaagaagg tgcggaacaa agcctgctaa attcgaccgg       600
     tgtcggagag ttcatggatg cgcaaacggt gtcggacacg gcgcggccgg cggcgcttaa       660
     ctttaacgac gttaaagacg cgttaccaat attcgcgggt gatggaaaag gacaggacat       720
     aagcaaattc gtcaccgagt tcgaagagaa cgctctattg tttggatgga ccgatttgca       780
     aaagttagtc tatgcaaagc gattgcttac aggtccagcg aaattgttta tmggtagtgt       840
     cggtagtctg cgttcgtgga agcaactcaa agacgccctt gctgcggagt ttcgtgagga       900
     aactaagagt gtggaagtgc atgacgcgat gcgcaagcga aagaagaaga gcgacgaatc       960
     gtatattgag tacgtatacg caatgcagtc gctagcaaag agggggcaaa tggacgagga      1020
     atctatttgc gagtacattg tgcaaggaat cgacgatgat ccccggaaca aagtgtgttt      1080
     gatgggcgcg tcaagtctgg ctgagctcaa agtgcagttc aagaaatacg aggcgttgaa      1140
     atcgcagttg ccaaatgtgc gaaaggaacg ggacaccggt agaacaaagg acatgggtcg      1200
     aaaatgttat cagtgtggac aaacggggca tttgtccagc acgtgcaaca caaaaggagt      1260
     cgtccagaag tgttacaatt gcggtgtacc ggggcacgag gcaagagcat gtcgaaacac      1320
     gtcgcgacca aagtgttttc ggtgtggaaa aaccgggcac aaggcaaacg agtgcaaaac      1380
     aaaaccaatg acgagcgctt cttcgaatct gatcgttgac gatgaggaac caacggtgag      1440
     catgcaaatc ggcaattgtg tgctgtatag tttgtttgat agtggttgtt attttaatct      1500
     catcacaaac gcagcatttc tccgaattgg agctccagca gtagagaacg ccgctgtcga      1560
     gctacacggg ttcggtggaa agcggactcg tgcatcgggg aggtttgcga cggacgtgtc      1620
     gataaacgct aattgttatc gaggagtacc atttttcatc gtcccagacg gtactatgaa      1680
     atacgaggct gttattggaa gagaatcact acgtctcttc gatgccgaaa ttacaaaaga      1740
     tggtgttaag ctgacgccgc gaagtgagcg gagagagaaa gagacaactg gcatagatgg      1800
     agttcttcta gtaaatgact ttgaagtaaa cagtgatcag gaaataacgg ttccaataca      1860
     atatcgtgat aaaataaacg agtatattga aaattacaaa gtagttcaca gtgacaatca      1920
     cgcggaggat agtacggtga aattggaaat tgtgcctgac gaaaatattc aaccatttag      1980
     gcattcgccc gctcgcctgg catacacgga agaagaagcg gtggataggc aagtggaaga      2040
     atggttgcgg gaaggcattg tgcgtccatc atcttcaaat ttcgctagcc gcgtggtagt      2100
     cgtaaagaaa aaggacggaa caaaccgagt gtgtgtggac tttagacaat tgaacgcaat      2160
     ggttctaaag gatgggtttc ccatcccagt aatcgacgag gtgctggaaa ggctacagac      2220
     agctcgatac ttcaccataa tggatttggc aaatggcttt tttcacgtgc ctgtcgagga      2280
     aaaaagtaag aaatataccg cgttcgtgac gaagcgaggc ttgtacgagt ttaatcgcgc      2340
     acctttcggg ttttgtaact cacccgctgt gttcatacgt tttgtgaacg ataaattcaa      2400
     aactttggtg agtgaaaatg tgatggacct gtatatggac gacattgtaa tacacggcga      2460
     aacggataaa gagtgtttag agaaaactga aagagtgttg acggtagcgg ctgcaagtgg      2520
     tttagcgata aaatggaaga agtgtaaatt catgcagaga tcagtgcatt tcctcggaca      2580
     taacgtgtgc aagggtacga tttcacccgg agcagagaaa acaaaagcta tcaggcactt      2640
     ccccaggcct aagaatgtga aggcggtaca atcgtttctt ggacttacgg gctttttccg      2700
     aaagttcgtg gaaggatact cactgatcgc tagaccactg accgatctat tgcaaaagaa      2760
     cgaggaattc gaaatgggtg agcgagagat caattcgttc gaaaccctga agcagctgct      2820
     gataacggaa ccggtattgc gaatctacaa tagagatgct gaaacggaga ttcacaccga      2880
     cgcgtcgaag gagggatttg gagcggtatt gctgcaaaag gccgatggaa agctgcatcc      2940
     agtgatgtac tggagcaaaa aagcaacgga aggtgaagct aagcagcaca gctacattct      3000
     ggaggcgaag gcgatatttt tggcggtgaa aaggttccgg cgttacctgt tgggcatcaa      3060
     ctttaagctg gtgacggact gcattgcctt caagcaaaca cttcagaaga aggaagttcc      3120
     ccgagaagta gcggcatggg taatgttttt gcaagatttt acttttaggg ttgaacaccg      3180
     agcaggacgt aagttgcagc acgtcgattg tttgagccga tacccgtatg aagtgatgaa      3240
     tattgctgcc gatgttacca tccgtattaa gcaggcacaa caacaagatg agacgttggt      3300
     acccattgga gagttgatcg caaaaggatc gtgttgcggt tacacgatga aaagtggcgt      3360
     tatttacaag gtggtggaag gaaatgagtt ggttgtaatt ccaagaagta tggaaagaga      3420
     gataattcaa gaagctcata ataacggtca ctattcggta aacaaaacgt tgcatgatat      3480
     caaacaaaaa ttttatatcc ctcatttgga gcagaaggtt aggcaggtcg gtaataactg      3540
     cgtacagtgc atattattca acaaaaagct gggtaaaaaa gaagggtatt tgcattgtat      3600
     tgataaagga gataagccgt tgcacacttt gcatatagac catgtaggac cgatggacgc      3660
     aacatccaaa caatatcgat acattttaac agtggtagat gcgttttcaa aattcgtgtg      3720
     gctctttcct acaaggacca caaattctga ggagacttta agaaaattac agatatggtc      3780
     aacgattttt ggtaatccta ctcgcattgt tacggatcga ggaacagcgt tcacttccaa      3840
     cctgttcatg gattatgcta aaaccgaagg aattgaacat gtagtttgta cgactggggt      3900
     gccacaagga aatgggcaag ccgaacgaat gaatagaatt atattggcta taattgccaa      3960
     attatctgcc gaggaaccat cgaagtggtt caaagtggtt ggaaaggtac aaagagcgat      4020
     aaattcacat aatcaagcat ccacaggtag atcaccattc gaactaatgt tcggaaccac      4080
     catgtacaat aggcctagcg agcaactgaa acaaatacta gaggatgaaa tgcaaaacag      4140
     ttacgatatg gaacgaactc aaatgagaat ggaagctcgt gaagcaatag agaaggcaca      4200
     ggcctgttat aagaaacagt acgataaaaa atgtaaaacg gaacatacgt acggattagg      4260
     cgatttagta gccattaaga gaactcagtt tattgcaggc aaaaaactgg caagtgaatt      4320
     tctgggcccc tacgaagtta ttaaggttaa tcggaatgaa agatacaaag tgaaaaggat      4380
     aggtaacgga gaaggaccca atatcacaac cacaaatgcg acaaacatga agttatggag      4440
     atatgtcgcg tataatcaag acgaaatgga gctagaggta acagagagtg gggaagaaaa      4500
     cttataactt ttccgaggcg taaaagctgg caggacggcc gaa                        4543
//
ID   Gypsy-58_AnFu-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2870-2870 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 137 BP; 48 A; 26 C; 27 G; 36 T; 0 other;
     tgtaagaaat aagttgttaa cccctgagaa gagtgacggt cactcacggc tctcactggc        60
     gaaattataa aacgatggaa accgtttaga aataaatcag tatcgttcga actctaacct       120
     gaagatcagt ttttaca                                                      137
//
ID   Gypsy-58_CQ-I repbase;    DNA;    INV; 7699 BP.
XX
AC   AAWU01036277;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_CQ_;
KW   Gypsy-58_CQ-LTR; Gypsy-58_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7699
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 495-495 (2011).
XX
DR   Genome; AAWU01036277; Positions   15018    7320.
XX
CC   Positions [3360-3863] - Reverse transcriptase
CC   Positions [4914-5393] - Integrase core
CC   'TTTT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           433..2481
FT                 /product="Gypsy-58_CQ-I_1p"
FT                 /translation="MESYIFPSTSTLNDEELNFELKLRNKQIYPNEKLEQK
FT                 QLFVKRLFTEDREKKTKYKGINFYENEKPIIIKNVDEIIEKLNTTFDRRLL
FT                 SRLRHYLIRTNYALTASEFDETDKTYLIKEIEDVFTKFKKKFKYSSEDEGL
FT                 ESEGNGKDGKNDKKKDEPTSKDDKLGVSSKLNASLDQILSKLSLASERITD
FT                 FIEASQLKKLNRTGNDWSDYSNSEDERERGRRNRDSRDNKSHGDSKQPRLG
FT                 EYDKWRRGRKIFQGPEPDPIPGHSRQNFSNHGRGLGGTSFHNDQGRGRKVN
FT                 RGGNLSHIDRQQGYDSSGDYGSGSSSRDVRRQPSKKRVVSRHRNNRGRSLS
FT                 SSDGHADRDGPQRRHRRRSGNRHRRDISDRSSSASRHRRGYRRSRVENWDL
FT                 IFSGDNRSIQVEDFLYRIKKLARHEDVSQGELLRNIHHRLKGEAYDWWFTR
FT                 EENFTRWSRFEDEIRFRYGNPNRDRGIRAQIRELKQKRGEKFVAYVTEVEK
FT                 LTQCLVRPFSPDTLFELIWENMRPHYRSRLSTITVDDLEHLIELNHKIDAN
FT                 DPFFFKPLNGTRNDVNHLTVEESDYSDDEGFQVNAIQKQRTPRQSAPPGGQ
FT                 SRAANISNDRLTSDQQQQPGTAEVPVCWNCQAIGHAWRECTKPKLVFCYAC
FT                 GKLGRTARTCEKNHYPTSQEDQDQDQSTNWRRDA"
FT   CDS           2664..5759
FT                 /product="Gypsy-58_CQ-I_2p"
FT                 /translation="MSSLNLIEAHGLKILKSNIKVCTADDTEHTCLGYVNV
FT                 PYTLGNETKVVSTLVVPQIKKPLILGMDFWKAFNIRPVITTNNRTEELDLT
FT                 WTSTLSDTPNVNCLRVENDHALADNEIIALSIHIMEFDVDEDQIHMKSQPE
FT                 EDDSLDIPTLELPEDPEALIDAVETEHPLTVEEKRQLKDVLRQFDCTSEGR
FT                 LGRTTLIEHEIELVEGTNMKELPMYRYSPKIWENVEQELERWKTLDVIEEC
FT                 TTEFASPLVPVKKANGKIRVCLDSRRINSVTKKDAYPMRNMSEIFHRLQKA
FT                 KYFSIVDLKDAYFQIPLRESSRNYTAFRTPKGLFRFKVVPFGLKNAPFTMS
FT                 RVMNLAIGFDLEPNVFIYLDDIVIATEDLNEHFRLLNEVASRLKRAGLTIS
FT                 VEKSRFCRKQVRYLGYLLTENGLAIDSAKLEPILNYPRPKTIREVRRLMGL
FT                 MGFYQKFIHRYSHVTAPITDLLKKTKKFRWSEEANNALSELKSVLTSAPVL
FT                 SNPDYSRPFLIETDASQLAVGAALMQEFDEGKRIIGYFSKKLSSTQRKYSA
FT                 TEKECLGVLLAVENFRHYIEGSTFTVVTDAKSITWLFSISAANANSRLLRW
FT                 ALKLQSYDFVLQYRKGKDNVLADCLSRIETVQIVDQDYVELRKKIQKDPDK
FT                 FKSFRVSGERIYKYIEEPGAFKDKRFEWKYYPPMSERTEIIHKIHDSAHLG
FT                 YDKTLNKLRETYFWPNMPTETKKFCRECIPCKTAKGININPTPAMGSQKKF
FT                 CDHPWQFITLDYVGPFPASGRNRSTCLLVLTDVFTKFVLVQPFRQATASSL
FT                 VHFLEQTVFLLFGVPEMVLSDNGTQFLSKEFSKLLEHYGVKHWLTPSYHPQ
FT                 VNNTERVNKVITTAIRATLKGNHKTWAENIQQIACAIRNSVHESTKYSPYF
FT                 LTFGRNMISNGMEYENLREMNTPTSTTLSEQEREELYKEVRKNLAEAYQKQ
FT                 AKYYNTRSNSKAPTYVVGEKVLKKCTLLSDKSKDFCAKLGPKYVEAYVNRV
FT                 LGDSYELKDKDDKILGIFHATFLKKF"
XX
SQ   Sequence 7699 BP; 2476 A; 1425 C; 1635 G; 2163 T; 0 other;
     aaaatcttca tagcacggtt aggtcggtta cattggcgcc caacgcaaaa agttttccat        60
     agaatttgct tttgttggat gatatttgaa taggaaaaga aagtgccact gtttttttat       120
     attttttttc agtttgtttt tttttttttt ttttgaaact gtacatattt aaacgaaatc       180
     ggagtgttat gaaatttctc tcagtttttt ttataaaggt tgcgacttct ccgcatgtat       240
     caaagatatt tttttgtaga tatatacatt ttttttagtg gttaggtttt ttttcatttg       300
     tacatacttt ctattgaaaa tgatctttga acattttttc taaatattag tttttttttt       360
     aaatttacat tatcttcata ctgatataac gagttaggct aatagaaagt tatagattta       420
     gttagtttga aaatggaatc gtacattttt ccctccacat caactttgaa cgatgaagaa       480
     ttgaattttg aacttaaatt acgtaataaa caaatttatc caaatgaaaa attagaacaa       540
     aaacaactat tcgtcaaaag attgttcacc gaagacagag agaagaaaac aaaatacaaa       600
     ggaattaatt tttatgaaaa tgaaaaacca attatcatta aaaacgttga tgaaattatt       660
     gagaaattga acactacatt tgatcgtcgt cttctctcaa ggttgcgaca ttacctaatt       720
     cggaccaatt atgctttaac agcatctgag tttgacgaaa ctgataaaac atacctaatc       780
     aaggaaattg aagatgtttt cacaaaattt aaaaagaaat tcaaatacag cagtgaggat       840
     gagggattag aatcagaagg aaacgggaag gatgggaaga atgataagaa aaaagatgaa       900
     cctactagca aggatgataa gttgggagtt tcctccaaac tgaatgcatc acttgatcaa       960
     attttaagca aattaagtct cgcctcggaa agaattacag attttatcga agcgagccaa      1020
     ttaaaaaagc ttaacagaac gggaaatgat tggtcagatt attcgaacag tgaagacgaa      1080
     agggaaaggg gtagaagaaa cagagattcc agggataata aaagccatgg agactctaaa      1140
     caacccagac tgggagaata tgataagtgg agacgtggtc gaaaaatctt tcaaggaccg      1200
     gaaccggatc cgataccggg acatagcaga cagaactttt cgaatcatgg tcgtggtctc      1260
     ggcgggacat cattccataa tgatcaaggt cggggcagaa aggtgaaccg gggaggtaac      1320
     ctgtctcata tcgacagaca gcagggctac gatagctcag gtgactacgg ttcaggcagc      1380
     tcgagtcgtg acgtcagacg acaacccagc aagaaacgag tggtaagccg ccaccggaac      1440
     aacagaggga gatcccttag cagttccgat ggtcacgcag atcgagatgg tccacaaagg      1500
     cgacacagga ggcgttccgg aaatcgacac cgacgagaca tttccgaccg tagttcgagt      1560
     gcatccagac acaggcgtgg gtaccggaga tcgcgagttg agaactggga cctgatcttc      1620
     tcaggtgaca acaggtcaat tcaggtagag gattttctgt atcgaatcaa aaagttggcc      1680
     aggcacgagg acgtgtcaca aggcgagttg cttcggaaca tacatcaccg attaaagggt      1740
     gaagcgtacg actggtggtt cacgcgcgag gagaatttca ccagatggtc tagatttgaa      1800
     gacgaaatcc gtttcaggta cggaaacccg aaccgggaca ggggaattag ggctcagatt      1860
     agggagttga aacagaaacg gggagaaaag tttgttgctt acgtaacaga ggtcgaaaaa      1920
     ctgactcaat gtctagttcg accattttct ccagatacct tatttgaact aatttgggaa      1980
     aacatgaggc cccattatcg ttcgcgcctt tcaacaatta ctgttgatga tttggaacat      2040
     ttgattgaat taaatcacaa aattgacgct aatgatcctt tcttttttaa gccactaaac      2100
     ggaacaagga atgatgttaa tcatctaacc gtggaagaaa gtgattattc tgacgatgaa      2160
     ggatttcagg tgaacgccat tcagaaacag cgaacaccta gacaatcagc accacctggt      2220
     ggtcagtcta gagctgcgaa tatttcaaat gatcgtctaa cttcagatca acaacaacaa      2280
     ccaggtacag cggaggttcc agtttgttgg aactgccagg ccatcggcca tgcttggaga      2340
     gaatgtacaa aaccaaaact agttttctgt tatgcttgtg ggaagttagg tcgaacagct      2400
     cgaacttgtg agaagaatca ctaccctaca tcccaagaag atcaagatca agatcagtcg      2460
     acaaactggc ggcgggatgc ttgatcggga attcaaccat ctcgccagta gaaacaattc      2520
     ccagcgaaga ggaatctact tacttaaata acaactcagt cttacaaatt agggttaatc      2580
     ctagtgcttg cccacacatt aaagttaacg tgttaggttc agaaattgtt gcactgcttg      2640
     attctggtgc tggaataagt gtcatgagct cgttgaactt aatcgaagct catggactaa      2700
     aaattttgaa atctaatatc aaagtctgca cggccgacga tactgaacac acttgcctag      2760
     gttatgtgaa cgttccatac acgctaggaa atgaaactaa agttgtatca acactagtcg      2820
     tacctcaaat taagaaacca ttaattctag gaatggattt ttggaaagcg tttaacattc      2880
     gaccagtaat aaccacaaac aacaggacgg aggagttgga cctgacgtgg acgtccacgc      2940
     ttagcgatac gcctaacgtc aactgcctac gcgtagagaa tgaccatgcg ttggcggaca      3000
     acgagatcat tgcgttgtca atacacatca tggagtttga cgtggatgag gatcagatcc      3060
     atatgaaatc tcaacccgaa gaggacgatt cgttagacat tcccacgcta gagctgccag      3120
     aagatccgga agctttgatt gacgcggtgg aaacggaaca cccgttgact gttgaggaaa      3180
     aacgtcagct gaaagatgtc ctgcggcagt tcgattgcac cagcgaaggt cgtcttggga      3240
     ggacaaccct cattgagcac gagatcgaac tcgtggaagg gaccaacatg aaggagttac      3300
     cgatgtatcg ttactcgccg aagatctggg agaacgtcga gcaggagtta gagcgttgga      3360
     aaacgttgga tgttatcgag gagtgtacaa ccgagttcgc cagtcccctg gttccagtaa      3420
     agaaagcgaa cggaaaaatc cgagtttgtt tggactcgcg ccggatcaat tctgtcacta      3480
     agaaggacgc ttacccgatg aggaacatgt cggagatctt tcaccggttg cagaaagcga      3540
     agtactttag tatagttgac ttaaaggatg cgtactttca aataccactt cgggagagtt      3600
     cgcgtaacta cactgccttc cgcacgccca aaggcctttt taggttcaaa gttgtccctt      3660
     ttggcctaaa aaacgcgccg ttcacgatga gtagagttat gaatctcgca attggcttcg      3720
     atttggagcc aaatgttttt atatatctag acgatattgt tatcgccact gaagacctga      3780
     acgaacactt caggctcctg aatgaagttg cgagtaggct caaacgagca ggtttaacaa      3840
     tatctgttga aaaaagccgg ttttgtcgaa agcaagtgcg atatttaggc taccttttaa      3900
     ctgaaaacgg cctcgcgatc gatagtgcca agttagaacc gatactcaat tacccgcgcc      3960
     cgaagaccat ccgcgaagtg agaagattaa tgggactaat gggattctat cagaagttca      4020
     ttcatcgtta cagtcacgtg actgccccaa taactgattt attgaagaag accaagaagt      4080
     tccggtggtc tgaagaggcc aacaacgcgt tgagtgaatt aaaatctgta ttaacgtccg      4140
     cccccgtttt atcaaacccc gattactcgc gaccgttctt aatcgagact gatgcgtccc      4200
     agctcgccgt gggtgctgct ctgatgcaag aatttgacga aggaaaacgt attattggtt      4260
     attttagcaa aaaattatcg agtacgcaaa ggaaatattc cgcaacggaa aaagagtgtt      4320
     taggagtgct tctcgccgtg gaaaattttc gacattacat tgaaggatcg acatttaccg      4380
     tggttaccga cgcgaaaagt attacctggt tgttctcaat ttccgccgcg aacgcgaact      4440
     ctcgtttgtt aagatgggct ttaaaattac aatcgtacga ttttgtatta caataccgga      4500
     aagggaaaga taacgttcta gccgattgcc tctcgcgaat cgagaccgtc cagatcgttg      4560
     accaagacta cgtcgaactt agaaagaaaa ttcagaaaga cccagacaag tttaagagct      4620
     ttagagtttc tggggaacgt atttacaaat acatcgaaga acccggggcg tttaaggaca      4680
     aacggtttga atggaaatat tatccaccta tgtccgaacg aaccgaaatc attcacaaaa      4740
     ttcacgattc agcacacctg ggatatgaca aaacattaaa caaactcagg gaaacctatt      4800
     tctggccaaa catgcctacc gaaacaaaaa aattttgtcg cgagtgcatt ccatgcaaaa      4860
     ccgcgaaagg aatcaacata aatccaactc ctgctatggg ttctcaaaag aaattctgcg      4920
     accacccctg gcaattcata actttagatt atgttgggcc ctttccagct tcaggtagaa      4980
     acagaagcac atgtttgctc gttctaactg atgtgtttac gaaatttgtc cttgtccaac      5040
     cttttagaca ggcaacagca tcatcattag tacattttct agaacaaaca gtatttttgt      5100
     tgtttggggt accggaaatg gttttatccg ataatggcac acaatttttg tcaaaagaat      5160
     tttccaaact tttagaacat tacggagtta aacattggct tacaccttct taccacccac      5220
     aggtgaataa cactgaaagg gtaaacaaag taataacaac tgcaatcagg gccactttga      5280
     aggggaatca caaaacatgg gcggaaaaca ttcaacaaat cgcttgtgcg attaggaatt      5340
     cagtacatga atcgacaaaa tattcacctt attttctgac atttggtcgc aacatgattt      5400
     cgaatggaat ggaatacgaa aatttacgag aaatgaacac accgactagt accaccctaa      5460
     gcgaacaaga acgagaagaa ttgtacaaag aagtacgtaa aaacttagca gaagcttacc      5520
     agaaacaagc gaaatattac aatacaagat ctaactcaaa agcaccaact tatgttgtgg      5580
     gagaaaaagt tttgaagaag tgtaccttat tatcggacaa atcgaaagat ttttgcgcca      5640
     aacttggacc aaaatacgtc gaagcttacg tgaatcgagt tctcggagat agttacgaat      5700
     taaaagacaa agacgacaag attttgggca ttttccatgc aactttctta aaaaagtttt      5760
     aaatgtacat aaaacaatca aacttattga aactaggtta gtaaatattg ctacattatt      5820
     ttacctagcc ttagaaatgt cggaacgaca tttgtacata aactcagcaa aatctactta      5880
     gttctatatt agtaaacaaa aacattattc actatcgctc accattttct tcattcataa      5940
     atcgtttaag tttagatcca acttttcagc atgtcgacgt agattcattg aggagtattc      6000
     ttgaaacact tttttgaagt cgttgagcat aaatttcatt gattaaatcc cttggggcag      6060
     cataaatttc attcatccgt atccgtatgt agtattggtg aaatctttag aacgtagtag      6120
     aaggtgacac acacactata gaacagcaac gaaaaatctt tccggctctc cctgttgatt      6180
     tagtatgata agttacctgt aaatagacaa caatctaata aattatagga taattaacta      6240
     tttataccga atactctcca gttttagaga atcaggggga aaaagtgcca atttttcagc      6300
     tgaattcgat tttcttagtc cacacgcggc acacgttgtt tttgaggcac tcttgttttg      6360
     gttatgacag ctgatttgac gttgtcattc cgggacaggg ctgtgtaagg ttatgctgtc      6420
     agttttttcg atgatttttt ttcggcaggg atgaacacgg ttcacggcga ggaaattcga      6480
     ggtttaatcg aacaatgttt gagaataaga attttttttt taaattttat ttttccgtta      6540
     aatttggatt tgaagcattt ttgaaaattt tgaggtcgaa caaaaattac cattagactt      6600
     atgattaagt tgaggtgatt ttgttctgtt tggaggacag tttgattgaa gttttgtcga      6660
     tattttgatc gatgtgaagc aatcactcta ctttaccttt ttaacttctt tcctaggatg      6720
     gatatgatcc attaggaaat ttggcaaacc agtttgcgtt gttagatttg tttatcgaaa      6780
     aaagacatta gtcgaaagaa actgatagta tgaacatctt tggtgaaagt agctctagta      6840
     attaagttgt tatctgagag aaatgaagta actaaattta gtatacataa gttttagata      6900
     ataatttcgg ttcaggatcc cgtgcacagc tacccagtca cgaaatattc tagcagagct      6960
     ggttctgtca gaatcctgct agaacagtgg aacatttctg ctagaatgct gtaagaatat      7020
     ccagctctat aagaactctg ctagaatcct gctagaacgt cgtgactggg tagtttttag      7080
     gttatgaaaa tttgttcaat tttcaattga acaaattttc ataaaacgag gtggtgtgat      7140
     gtaacgtttt ccgttattgc gaattaattt ttttagttta aacttaaagt taataaagaa      7200
     ataaaaaaaa atgtaaataa ataaatataa aaaaaaatta ttaaataaat atctagattg      7260
     aggcaacgcg cgtaccggta tcagacgaag cgagtgtata ttcacgactc acgtttcgtg      7320
     gaattttata gcaaatggga tctgtcacac tgaacgttgg tgagcccgtc tcgggtgccg      7380
     ccatattccg gggactcgga acttcggagg tttcctgggt atgagagttt cgggtctcgt      7440
     tctttctgcc aacggaacgg ctggtgataa gaagtgcgcg acgcgactag tgactttaac      7500
     ctttgccttt gccttttacc ttaataggtt agttgtacat agtgcgagtg ttcttcctaa      7560
     agatttattt aattaagttt actttttatt ccattagttt tacctaagtg aattcttgga      7620
     tttttgcgtc cgctttctta aatacagttc actttaacat acaataaggt aacgtagttt      7680
     gtttgaatta aatatataa                                                   7699
//
ID   Gypsy-58_CQ-LTR repbase;    DNA;    INV; 1331 BP.
XX
AC   AAWU01036277;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_CQ_;
KW   Gypsy-58_CQ-I; Gypsy-58_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1331
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 496-496 (2011).
XX
DR   Genome; AAWU01036277; Positions    7319    5989.
XX
SQ   Sequence 1331 BP; 298 A; 388 C; 308 G; 337 T; 0 other;
     tgtgaaatta acatgagttc gcgttggaca gcagcgtcca ataagacgcg tttttgtatg        60
     ggctggaaat ttttgctgca attgcgaaag cccacgccgg gtttcgtacg ccgtcctgcg       120
     ggacgttcct ctacgttttg gatcagcctc tcggcgcgtc ttcgccgcca ttttggtgac       180
     tctacattcc gtgaccgtgt gacgctccgg cccgccatct tggcagtcaa acggagtcgt       240
     ggaagtccgt caattcccgt tggcagaaaa cacacaccgg tctccaattg ccggtcgtga       300
     aaagggtcca ccacgttaca acccccggac ccttccgaga gccgtacgta gtcaaatcgt       360
     cgtacacacc cgggtcggga atcctgttgg ttttaactta aagcctccaa tggtggggtg       420
     ttcgtttgcc tccaggacga agacccagtc cggacagcgc ccgacactcc gtgtccatcg       480
     cgcgtgagct gagctcggct cgctctttat tggctctgcg gaattgcact cttgtgaaat       540
     cgagaagctt cccgtcgcgc cgcccacact ccgcaactta gttttcggcc acgagcgtcc       600
     acgtagtccc cactgcacca acgagggagt ggacgacact gacagcgcta cttctcgggc       660
     tgtcacgcac ggcaatcagc atcgagcgtc gctcgacggc ggattcccgc caaagcagag       720
     gaaccaactc gacacctcca gactgccagc atctaccaga acatcgcatc agcagctttc       780
     gccggccctc gacggccggg cgtcttcgca gcagcatgtg caccaacacc aacaaaaccc       840
     tgcgcaggta tgtgagagac ccttgaatca tggccatgtt tcctctctcc catttccctt       900
     acccacacaa acaattgtct agctcgaact ctcgcggtag ttttatgctc cgggaaatgg       960
     aatcccgcaa atacacagtg aaaccatgat tttgcgaaca tgaatttatt cttttttttc      1020
     cctcatgcgt taccttgaat aaatctctat gaacgtgcac tcttgataac cttttcgttt      1080
     tcgttttttg aaatcatacc ttcttttttc cctaactttc cgttgtctga aagaaccaga      1140
     atcgaagatc tccgtgggtc attacacgtt caatttgata agatcccatt ttagttattt      1200
     ttggtaattt cgtctgcgta aaagccgtat gccgactaac gaccctgaga gctaatgtcg      1260
     ggcaactaac acgacgggtg gcctcttgtt tcggcaagag tggcgcataa gccactgcgt      1320
     ttaaaactac a                                                           1331
//
ID   Gypsy-58_DEl-I repbase;    DNA;    INV; 7222 BP.
XX
AC   .
XX
DT   10-JUN-2021 (Rel. 26.06, Created)
DT   10-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion, a sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_DEl-I;
KW   Gypsy-58_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7222
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (10-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 4-bp TSDs. The flanking LTRs are 96% identical
CC   to each other.
XX
SQ   Sequence 7222 BP; 2747 A; 1218 C; 1631 G; 1626 T; 0 other;
     ggcgcagtcg gcaggccttc gactaaggac aaattctacc caaaaagctc aaggaaggat        60
     ctgtgactgc ggaggatacc aggaatttgc aacactataa ttatcctcat attgtaagag       120
     tgattagagc aaaatggagt gaaataataa attacaaata aatatgaaac aaaatgatat       180
     ataaaggaaa atatagatat taatatataa taaatggagt aaataaaagt gcgagaataa       240
     ataaatcaat aaagtaaagc gtaaagaggt cgagccacgt ttagagaagg agaaagaaga       300
     aatgtaacaa gaattgtgca cagtgggtaa aaatgagaat aacggtgcta atattcgaag       360
     atgggcagta aagattaaag aagtaataga aatcaggtgc gagattttaa ttttggttaa       420
     aataaatggc cgatggatcg gtacgacaag agattgtcga gcggcgtcgt tatatggtcg       480
     agagcgccga acgttcggtg ctgcaccgag cgggtcgacc aagcggacgg ttgccttcga       540
     ggcggcgaac ggttgctgtt gccgctcgaa ggcaattttg tatagtgggc gaagttatgg       600
     cggaagggag aagaaattgg ctcgatcgga tcaagacaga ataaaaatgc gatgaaaata       660
     ttgtcaggag ccgctcacat gtattaggcg aagaactgta acgcacaggg cgaagcttag       720
     aatgggacgg taacgacaat ttgtgaataa ataagaaata ttgttgagat ccatttatat       780
     gtattaggcg acggactgta atgcacaggg cgaggcttag catgtgatgg ttgcaacaag       840
     ttggaaataa ataaataaat aaaattgtta aggtccatgc acacgtatta ggcggcgaac       900
     tgtaatgcac agggcaacgc ctagcgtggg gggtcctata caattggaaa atggcaaata       960
     tcacgtgtag agcaatgact atccgcaaat ggttgtgaag ctgtatcgca cagtgatcaa      1020
     ctagctttgg cgtgctgggt gaggaaatta aaaaagggca agctacaaat aagaaaaagg      1080
     caaaataaga tgaatagaaa caaataaatc aaaataaaaa aaattagtaa ataaataaat      1140
     aaagaataaa attattacga tccattttac tattttatct aagtgtgaga caaattactt      1200
     attcaaacta attcacagaa ctccatttca acacggaaac tcgaagttca aaaacactaa      1260
     ctacagaaga acacgactat acaattaatt cacacggata catatacttg agtaaaatta      1320
     agttaagcac taatatacat tcataacata agtattaaat aagaatttga aacagttaga      1380
     agtagcatac atacagtaca tacttaaaag caataatttg aaaaattaga agtagccaac      1440
     agagttttac agcaactagt tcagaagaac gcaggttaac accaatggca acaacaagtg      1500
     tattagaggc catcaaggta atagacctgg tggaaattat tccaaaatat gaaggggact      1560
     ccggtaaatt agatggattt ataggtgcag tggagcaggt acttgacctg atcaaaggag      1620
     aggaaagatc aaatgtaggg gtaatagcgc ttagagcagt gaggagtgag attgtaggag      1680
     acacagataa gatcctcgac ttagatgagt cagagctcaa ctgggatcaa attaagaagg      1740
     tattaattac acattttaag gataagagat ccgagcaaga tcttattatg gagttgaccc      1800
     attttaaaga aaagaagcta gaattggaaa cattgtatac aaaagtcatg accctgaaga      1860
     aggccctggt gagtctggcc aagtccagcg aacagggcat attattgaga atcgaaaaga      1920
     tcaaatggta cgaggatatg gccctaaacg cctttgtttc ggcattaaag gagcctatag      1980
     gagttacaat ccgaaacatg ggggtaccga acatagcaaa ggcttatgaa atagcctgca      2040
     ggaagaacaa tttaggtacc ctagaggaaa caggggtaga agagattggt caagaaacta      2100
     caggttcgca ggccaaaggg gttaaggagg ctccaaaaca gaagctagga aaacaggata      2160
     acccagtgcc agaggcacag atgggctctt ggccgcaata tcggtgggct gcaaataccc      2220
     aaccccagtt tccgatgccg ttctcaatgc ccaccatgaa tgaatggcca ggatttgggt      2280
     tcccatatgc aatgatgggt aatccattca ggacagataa ccttaatcag acagaagcct      2340
     ctaattatgt taaaccgtac cgtaatcatt actacagaaa cacgaagtgg aactatggcc      2400
     aaaataatcg tgagaggcag tggtatggca acaactaaaa caacagcaag ccgagagaac      2460
     gtcagttagc gatccaggca gcgggagatg gaagttttgg acaatcaagg atgtctattc      2520
     aattcaaact attcggaaca atcatataac tcaattaatt cgaggcagtc gaataattcg      2580
     accagctcca agccatcata caattcgatc aataatttag agagagacgg aaatagacag      2640
     tcgatgagca gtcaattgca taatatacaa gaggaggagg caatttttcg caatcagcct      2700
     cgaacaacca acaggatatt taggaaaaag gaggggccac tccaccctac catatgtaat      2760
     gatcaaaatt accccacaca aaaccataaa attactaatt gattcaggat ccacttactc      2820
     tttcattcgt cccgaattag ctcaaccaca gtatgtgaag gagctccatg acccaatagc      2880
     cattaagaca attacccaat cacatacgat tttgcaggaa gcacacgtac caatgttcaa      2940
     agaattcaga ggagtaggaa aaatgagatt attgctcttc agatttcctc agtttttcga      3000
     gggattaatt ggtatagact tgctgcaaca aatgaaagcc gtgattgata ttgagagggg      3060
     ctggttccgc acggcggaca cagaattgca gatacattcc actaagtata gacccagcga      3120
     ggtccactca atagaagcag ggacaaaagc agtcattcct atgccggtac gagtacccga      3180
     tggggatttc ttactaaacg aaacaatagt aaaagaggat ttgatcattt cagaaggaat      3240
     ctatagggca agtggctgga aagagcctgg tcgaaataac aaactatgca gaaaaagatc      3300
     aggaattatt tttggacgaa ccgttggaag ttgttgaatt cgaaactgac aaacatttcg      3360
     agctcaacaa tatagaggag acagataatg gaaataaaaa gataccattt gataagatca      3420
     gaactgaaca tttaaatgcg aggagaatgg tggtggacta taggaaattt aacgataagg      3480
     taaataaaga cagatatcct atgccattaa taaatgacgt attggatagc ttgggtagaa      3540
     cacattacgg atttgtaaaa agtatttaag aaacttgcgg aggcaaactt caagttgtaa      3600
     ctagacaaga cagagttttt aaggaaagag atggaatact taggacaagg gatcagacca      3660
     aacccaggaa agatcgaagc tataaaaagg ttcgagattc ccaagactag gaagcagata      3720
     aaatgggata ctatagaaag ttcataaggg atttcgcggc tataacaaaa ccattgacaa      3780
     gacagttaaa aggaaaaaag gccgtgcaga tagaccaaga atacaaggat gtttttgagg      3840
     tatgaaagac ctaactgtgc aatgatccaa tcttgcagtt tcctgacttc gataagccct      3900
     tcatacttac cacagatgca agtaactatg ctattggcgc cgtcatatcc caaggaaatt      3960
     tgggaacggg cagaccaata gcagaactct gtcaggatca gaagtgaact acgccacaat      4020
     agaaaaggaa atgctcgcca ttatttgggc gattaagcat tttaggcatt acgtattcgg      4080
     cacaaagttc aagatagtca ctgaccatag gccattaaca tggctaatga gcgtcaagga      4140
     acctgattcc aaacttgtaa ggcggagact cgaaatgttg gagtacaatt acgagattgt      4200
     atacaaaaag gggtctcgaa atgtagtggc tgacgcactg agcagaattc aaccggagct      4260
     caatgtgttg gaagacgcct cagagatggt aaccaatgga gagacaattc actctgctgg      4320
     agaagatctc cagttaggat tcccaatatc ggagagacca ctaaacgaat ataacatcca      4380
     ggtggtcata caggaaggta gagtagcggg gatacagaaa caaattccgt tcagaaataa      4440
     attgagaata atttggacgg ataacaattt tgatgaggaa acagttgctt gcaggttaaa      4500
     ggagatcctc aaacctaaaa gaacggtggc actcctgttt ccagacaact tggtgataaa      4560
     aatccaagag gcatattgca agcatttcgc ttatatcaag ttgtttgggg caataagatg      4620
     tacagtcttg ttaccggata taacggaaag ttgtgaacac gaacaggtta tcaaagacta      4680
     acacgaaagg tcaaatcaaa ggggaataga cgaaacttta gcacacctga aaaggaaggt      4740
     gtttttcata catatgaaac atataattac ccaaaaaatt aataattgtg acagttgctt      4800
     aatacaaaag tacgatagga aaccaaataa gatcaaatat agttttacag agacaccaca      4860
     gaggcctatg gaaatagagc acattgactt gtacttcata aacaagaaaa gtctgctaac      4920
     cataattgac aagttctcga gatacgcttg ggggttgaca atcccagcaa aagaaagcgt      4980
     aaatatcgtt aaagcagtaa agagtttcat ggccttgttc gaggtgccta aaaagatagt      5040
     ctgtgaccaa ggagtggaat tctcttccaa cttgttcaag aacacactac atcctttcag      5100
     caatcgtcga gcaattctac agtcgaaaga ttgcactcga ctatcacaga aatatataga      5160
     ctaataaatg agacaaagag gaaaaagaaa cttgaaatca ggcatgaaga agtcctagat      5220
     gaggaattta taacttataa taacgccatt cattcagcga cgaaactaac accgcaggag      5280
     ttgttcacag ggagaacgca taacttccta aataacgtgt cctttaataa cgaacacgat      5340
     tatttacaga agattaatgc ctttcaagcg gagctttatc caagaattaa ggaaaaggtt      5400
     cagcaagaaa agaacaaaag aatagaggcg gcgaatatcg acaggcaaaa cccggacaca      5460
     atacaaccag gagacataat atttaggaag gaaaacagga gggataaatt aactcctcgt      5520
     ttttaaaaac acaaggtaat ggaagacaac ggtctcacac taacctctac taaaccacaa      5580
     aaaatgcata aagaaaaaat cagaagatta atcaaaccaa attaacaata attacaggtg      5640
     gtcaaggatc atggccgcag aaaggagaga tccggccatt gctaggggaa gaaccactag      5700
     cgcagataaa tctaggcgct gcaaagataa tacaaattca taaaacattg gtaaacatag      5760
     taaaatacaa gaacatcaag aggcaacaga acagttggaa cgaacactta cagagatagt      5820
     tgaagactcg gaaacaaggg accttgttaa ggttttgcaa aacaaattac agatgatcaa      5880
     gagcagataa gaagcaatat gccccaggag aaggaaagca aggtgactaa tcaatggatt      5940
     agaatctgta gttaaatcca taacagggaa cttagacgcg gaagacgcag aaaggttaga      6000
     agaggagata aggaaaatgc aggaaagagg agaggagatt gaaggagaat ttgagttccc      6060
     aagagaggac aggagctaga atcaagataa tgtttaaaaa attgacgaaa tatataaacg      6120
     aggagcaagg tcgagtaacg acatttatta ataattacaa gaatgaaatc agcaagacgt      6180
     ttttagagaa agacaagagg atttacagaa tagaatatat cgatagaatt gcgataacaa      6240
     cagatatgct agggctaaac ttgaatgagt tagccgaaag tttattttta gcaaagatag      6300
     ggctaatttc caaatttatt tacgatgaac aggaaacagc tagatgtata aaagagttgg      6360
     aggagcaagg aatacaggtt gtatcagagg agcatgtgtt tgagtttttg gagctaagga      6420
     caattatgaa tagcacggat ataatttttc gataaggttt ttaaaaagaa gagtactact      6480
     tacagagaat gataccatta ccaatgaaca aaacggaatt cattatcgca ccagattagg      6540
     tagtaaacaa taaagaataa atgtactatt ataaggataa atgtcagaag ataagaaatt      6600
     tgtatatttg taagaataat aagattgtaa accaaattaa tgaagaatgt cttaaaagtc      6660
     tgattaccgg aaaggaagcg gaatgtgaga cgagggatgc cggactcgta accaggatct      6720
     tcgaaccaga ggagggctac atcgcaattt tcaacggaga aaatgtaaaa ctgcaaacag      6780
     gctgtgggca gaacagaacc ctgaatgggt ccgtaatgat cacatttagc gagtgcagag      6840
     ccacggtaaa caacgtccaa tatgaggcgg tagaaaaact tggtacggca aaactaaagc      6900
     tggaaatacc acaaatttca accatgaaga agaacaaaac aacccaagaa ttgggaatcc      6960
     atgagctaaa aatggaagat ttggaaacaa aactatggat caataggata caaacgggag      7020
     caacaataca cacgacaacg acatatagca tgttgtcagt gataatgata atagtattgg      7080
     ctgtggcttg tttttctgaa cgaacgacca ccttcacacc agtctcccca cccgctggtt      7140
     tcgaaccaac cattgctcca cctgtcactt tcacaccaac catagcccca ctgtggtcga      7200
     aggttcagtc tgagggggga gg                                               7222
//
ID   Gypsy-58_DEl-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   10-JUN-2021 (Rel. 26.06, Created)
DT   10-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_DEl-I;
KW   Gypsy-58_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-331
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(6), 3106-3106 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. GC-rich 4-bp TSDs.
XX
SQ   Sequence 331 BP; 107 A; 88 C; 53 G; 83 T; 0 other;
     agttaccgcc tcagcacatt ccctcggcgg ttccccacct aaacccctac ggttggcgag        60
     cagctagaaa ccaaacactt cattggcaac taagttgcca accaaacaaa catcgcaacc       120
     actgctgaat ccaagcccca tatatgcatc cggtccaatt acgattccct tccgctaggt       180
     cagcatattg tatgtaaaca ctaggcttcg agcaaagaat tataaaataa agaattcatt       240
     ctgattttaa acttgaaacc agcaagtcca aacatttatt tggtcgggtt tatccaggaa       300
     catttgtcaa agaacctaca tatagttaac t                                      331
//
ID   Gypsy-58_DWil-I repbase;    DNA;    INV; 5287 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   13-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_DWil_;
KW   Gypsy-58_DWil-LTR; Gypsy-58_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5287
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1885-1885 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2832-3374] - Reverse transcriptase
CC   Positions [4389-4865] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1224..2651,2655..5285)
FT                 /product="Gypsy-58_DWil-I_1p"
FT                 /translation="MNRDEVLSLNVNELKAKLASLNLAITGRKQSLQDRLL
FT                 EHFGLVADEVEVESESDDAGSFQSTAPTVVRNNFTLRDIEDSLSSFSGSGQ
FT                 PSIENWLRDFEDNAEAVQWNSLQKFIYAKQLLKGAAKVFVRSERGVTDWIS
FT                 LKRILLSEFGSEVSAIEVHKLLRNRRKRPNEDFREYLYSLREIGSSINLDE
FT                 ASLIEYFIEGIPDSKANKSNLYQAKTVIQLKEQITIYEKVYFGRPQVVNRN
FT                 RNHNEKDDRKAEISKQPRKCFKCGEVSHLMSECPKIKCFKCDQIGHKASVC
FT                 PTRKLDTKKEYSRASTMSKEINVKGKAIFKTISCGNVELSALIDTGCDLCL
FT                 IRDDIIRKLHGVELSDERNRLLGVCKSELNTIGSFKAQVTIDGLQWPLTFH
FT                 VYRKEDIDYEVVIGNNILELADLVITKGNATFKPREEEVMPNTEAKETVHN
FT                 EEVKTPKGMLQEFESLCLLAEEEKSEIDLCHTKSDVKEVKQLIHSYVPQSS
FT                 KKSPVEMKILLSDECPVYERPRRLSFVDKGIVDSTVEKWLAEGIIQPSTSE
FT                 YASAIVLVPKKDGGKRLCCDYRRLNAKIVREHFPMPLIDDVIERLQGNTVF
FT                 TTLDLENGYFHVPVEPNSRKYTAFVTHSGQFEFLYVPFGISNSPHVFSRYI
FT                 FATFIDLIRDGTVVTYMDDLIIPSKDIKEGIYKLKCVLNRASEFGLRIKWQ
FT                 KCQFLKESIEFLGYIVEKGSIRPSKAKTQAVKNYPKPQNYKSVQRFLGLTS
FT                 YFRRFIESYALIAKPLSDLLRKDATFVFGDDHQIAFEQLKAALISAPVLRL
FT                 YNPKAVTEVHTDASMFGYGGVLLQKDSDDQLFHPVQYLSRKTKPAEEKYHS
FT                 YELEVLAIVEALKKWRVYLLGIEFKIITDCNAFAMTMKKRDIPVRVSRWAL
FT                 FLQEFKYEIEHRSGSKMKHVDALSRMSCLMLEDSMHHRLKIAQASDDWIRA
FT                 VTAVLEHQTYEDFFIKNGVLYKDPIKDLIVVPSLMEEELIKIARRKGHFSA
FT                 KRTQEEVERKFYIPKLFQKASEIVKNCIECIVSEGKAGKKEGFLAPINKED
FT                 KPLGTYHVDHVGPMDPTAKSYNYLFVVVDAFSKFVWLYPTKNTASEAVVDR
FT                 LGRQASVFGNPGRIISDRGAAFVSHQFGDYCKEQNIQHLMIATGVPRGNGQ
FT                 VERIHKIIIPMLTKLCYEKPTMWYRYVERVQQAINSTPPRSTKVSPFKLLT
FT                 GVEMRTNSFPELQELLEEEAIEELEIERTNVRQEAQHNIERIQEENRKSYN
FT                 KKRKKVVEYKIDDLIAIKRTQYGSGLKLKAKYFGPYRVVKVKSHGRYDVEK
FT                 VGDHEGPGKTSTVAEYMKSWNGQVNSSDDSTFEANDKSVRP"
XX
SQ   Sequence 5287 BP; 1867 A; 770 C; 1212 G; 1435 T; 3 other;
     aattggtgtc agaagtgaga tatgtacatt tacatggtgc atcgaactta cgtgcagtta        60
     aaagatgttg ttaaataaag aacactaata attaaaacaa aacgttcgaa gcgaaaaatt       120
     cattaaaatt gagtcgccaa agacagaaag ttcgaaaaaa aatgtgtgtt tgatttaacc       180
     ttaatgtaca aagagcggta aaaaaaacca ccccaattga tgaatgcttg tatgttagag       240
     agagacagcg aaacgtccaa gttcaagtga gagtgaaaag tgtggaggtg cgaacagtat       300
     agagcccaga acccggtttg cgtggcaaag aggctgaaag cgcaaagaga ttgacgatcg       360
     ttggaatttt gcaaaaattt acgtggcaat gaggctggca tagcgtaatt ttkgtaaatg       420
     tgttggagta tcgtcgtggg aactattcac tgagatggta gatttatgtg gcaaatggcc       480
     tggaacatag aatctatgtg gtgagcagct gtacctagag tgggaaattc ttgagaattg       540
     gcggcaagcg aagcttgtga aaattggcgg caagagaagc tacaacaatt ggcggcaaga       600
     gcgagaaagc attagacgca caagtttggc ggcgtcagtg cgaaaaattt gtacaagagc       660
     gaggcatcgg cattggcgtc acgagcgaga catcggcatt ggcgtcacga gcgagacagc       720
     gttagtgaga gcattcgtga aagatcggca tatcagcaga attggcgcga ataaacggcg       780
     ttggtgagtc aacacgagcg agcgagaagg caacatagtg gtgagccaga tgtttatgtt       840
     aattaacatt atgtttacag aacgaaagat gttataattt aaattgagtt gatgcaatca       900
     ttaaattaaa tcaatataaa tttatgtcaa aattataact aataatttaa agattggctt       960
     gaataaaagt aaagtaactt aatgttgatt caaaagtaaa gtaaattaat gttgattcaa      1020
     aagtaaagta aataaatttg gaattcaaaa gtgaagtaaa taaatttgga attaaaagaa      1080
     aagtaaatgt tgaaagagaa ataattatat tttgtaattg ctaaaagaag agaaaattaa      1140
     attactaaca atagagtaag attatacttt tgtaaaatat attkaaattt cagctgtaac      1200
     gagtaagcta cgacgaatac aaaatgaata gagacgaagt attaagttta aatgtaaatg      1260
     agctcaaagc aaagttggcc agtttgaatt tggcaataac tggtagaaag caatcgttgc      1320
     aagatcgtct tctcgaacat ttcggtttgg tggctgacga agtcgaggtt gaatccgaaa      1380
     gtgatgatgc gggatcattt cagtctacgg caccaactgt agttagaaat aattttactt      1440
     tgcgcgacat tgaggattct ctttcttcgt tcagtgggtc aggtcaaccg tctatagaaa      1500
     attggttacg ggattttgaa gataatgcag aagcagttca atggaactct ttacagaaat      1560
     ttatctatgc gaagcaatta ttaaaaggtg cagcaaaagt ttttgtgcgt agtgagcgag      1620
     gagtgactga ttggatatca ttaaaaagaa ttttgttaag cgagttcggc tcagaagtat      1680
     cagcaattga agtacataaa ttgttgcgaa atagacgtaa acgcccaaat gaagattttc      1740
     gtgagtacct ttatagtctg agggaaatag gcagttccat aaacttagat gaagctagtc      1800
     ttatagaata tttcatagaa ggaatacctg attcaaaagc taacaaaagt aacttgtatc      1860
     aggcaaagac agtcattcag ctgaaggaac agattacaat ttacgaaaag gtttactttg      1920
     gtcgccctca agtggtaaat agaaacagaa atcataatga gaaggatgat agaaaagcgg      1980
     aaatatctaa acaaccgaga aaatgcttta agtgtggcga agtatctcat ttgatgagtg      2040
     agtgtccgaa gattaagtgc tttaaatgcg atcagatagg gcataaagca tcagtatgcc      2100
     cgacacgtaa attagatact aaaaaggaat acagtagggc tagtacaatg tcaaaggaaa      2160
     tcaatgtaaa aggaaaagct attttcaaaa caatatcatg tggaaacgtt gagctgtcgg      2220
     cactcataga tacaggatgt gatctatgtt taataagaga tgatattatc agaaaacttc      2280
     atggtgtaga attaagcgat gaacgaaacc gtttattggg agtgtgtaaa agtgagttaa      2340
     atactatagg tagttttaaa gcgcaggtga ctattgatgg tcttcaatgg cccttaacgt      2400
     tccacgttta tagaaaagag gatattgact acgaagtagt gattggaaac aacattttag      2460
     aattagctga tttggttatc acaaaaggaa atgctacttt taagcctaga gaagaagaag      2520
     tgatgccaaa cacagaagcg aaagaaactg tacacaatga agaagtgaaa actccgaagg      2580
     gtatgttaca ggaatttgag agtttgtgtt tattagctga agaagaaaag agtgaaatag      2640
     atttgtgcca twtaactaaa tcggacgtca aagaagtcaa gcagcttatt cacagttatg      2700
     taccacagtc gtcaaagaag agtccagtcg aaatgaaaat attattaagt gacgaatgcc      2760
     cagtatacga acggccgagg cgtttatctt tcgttgataa aggtatcgtg gactcaacag      2820
     tagaaaaatg gttagccgag ggtatcattc aaccaagtac atcagaatat gcgtctgcta      2880
     tagttcttgt tccaaaaaag gatggaggaa aaagactttg ctgtgattat agacgtttga      2940
     atgctaagat tgtaagagaa catttcccaa tgccacttat agatgatgta attgagagat      3000
     tgcagggtaa tacagtgttt acaaccttgg atcttgaaaa tggatatttt catgttcctg      3060
     tggagcccaa ctcaaggaag tatactgctt ttgtgacaca tagcggtcag ttcgaatttt      3120
     tgtatgtccc atttggaatt tcgaattccc ctcatgtgtt ttcccgctac atctttgcaa      3180
     catttattga tttgattaga gatggcacag tcgtaacata tatggatgat ctaattattc      3240
     cttcaaagga tattaaagaa ggaatttaca agctgaaatg tgtgttaaat agggcatctg      3300
     agtttggttt gcgcattaaa tggcagaagt gtcagttctt aaaagaaagt atagagtttt      3360
     tgggatacat tgtcgaaaag ggttctataa ggccttctaa agcaaaaaca caggcggtga      3420
     aaaattaccc aaaaccacag aattacaaga gtgtacaaag gtttcttggg ctaacttcat      3480
     attttcgtcg tttcatagag tcttacgcat tgatagcgaa accactgtca gacttgttaa      3540
     gaaaagatgc aacgtttgtg ttcggtgacg atcatcaaat cgcatttgaa cagctaaagg      3600
     cagccttgat tagcgcacca gttttacgat tgtataaccc aaaggcagta actgaagtac      3660
     acactgatgc gtccatgttt ggttacggag gagttcttct acaaaaagat agcgatgatc      3720
     agttattcca tccagtacaa tatctcagcc ggaaaaccaa gcctgcggaa gaaaaatatc      3780
     actcatacga attggaagtg ttagcaatag tggaggcgtt gaagaagtgg cgcgtatatt      3840
     tactaggaat agaattcaaa atcataacag attgcaatgc ttttgcaatg acaatgaaaa      3900
     aaagagacat tccagtaaga gtttcgcgtt gggctttatt tcttcaagaa ttcaagtatg      3960
     aaattgaaca tagaagtggc agtaaaatga agcatgtaga tgctctaagt cgtatgtcct      4020
     gtttaatgtt agaggattca atgcatcaca gacttaaaat agctcaagct agtgatgatt      4080
     ggattagggc agtgacagct gttttagagc atcagactta tgaagatttc tttataaaaa      4140
     acggtgtttt gtacaaggat cccattaagg atttaattgt agtcccatca cttatggaag      4200
     aggaattaat taagattgca cgtagaaagg gtcatttttc ggccaaaaga actcaagagg      4260
     aagttgagag aaagttttac ataccgaagt tgttccaaaa ggcctctgag attgtaaaaa      4320
     attgtatcga atgcattgtt tcggaaggta aagcaggcaa gaaagaaggt ttcttagctc      4380
     caataaataa agaagataaa cctttaggga cttatcatgt tgatcatgta ggacctatgg      4440
     atccgacagc gaagagttat aactatctat ttgtagttgt cgacgcgttt tcgaaatttg      4500
     tgtggctcta tccaacaaaa aatacggcat cagaagcggt agtagataga ctcgggcgtc      4560
     aagcatcagt ttttggaaat ccagggcgta ttatatcaga tagaggtgca gcatttgttt      4620
     ctcaccagtt cggagattat tgtaaagagc aaaacattca gcatttaatg atagctaccg      4680
     gagtacctag gggaaatggt caagttgaac gtatccataa gataattatt cctatgctaa      4740
     caaaactttg ttatgaaaaa ccgactatgt ggtataggta cgttgaaaga gtgcagcaag      4800
     caatcaatag tacccctcct agaagcacaa aagtgtcgcc atttaaatta ttaaccgggg      4860
     ttgagatgag gactaatagt ttccctgagt tacaagaact tttggaagag gaagccatag      4920
     aagagctaga aattgaacgc actaacgttc gtcaggaagc tcagcataat attgagagaa      4980
     tccaagagga gaatcgtaaa agttataaca aaaaacgcaa aaaggtagtt gagtataaaa      5040
     tcgatgattt gatagcaatt aagcgaacgc aatatggttc aggattaaaa cttaaggcta      5100
     aatattttgg accatatagg gtggtgaaag ttaagtctca tggacgatat gacgtagaaa      5160
     aggtaggaga tcacgaaggt cctgggaaaa cctcaactgt cgcagagtat atgaagtcgt      5220
     ggaatggtca agtgaattca tcagacgatt caacattcga ggcgaatgat aagtcagtcc      5280
     ggccgaa                                                                5287
//
ID   Gypsy-58_DWil-LTR repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   13-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_DWil_;
KW   Gypsy-58_DWil-I; Gypsy-58_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-311
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1886-1886 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 311 BP; 106 A; 41 C; 81 G; 82 T; 1 other;
     tgtgggaatg ggtcgagaga cgagaagcgg tcgattgtac tgaaccagtt cagaggtgca        60
     taatttaaag kttatcaacg atatcgatga caaaccatcg atatcaattg agaaaagagt       120
     tttatggcgt caagttgtgt cgaccggttg tgttcctcgt ggctgctcga ataagaagag       180
     tgtagttatg taataattaa gtgataaatg tataaagaaa taatgttgaa taaaactgta       240
     cgattgattg tgagtaaaaa cggcctagaa attcgggagg aaaaagtggg attgcactaa       300
     cgagtcccac a                                                            311
//
ID   Gypsy-58_LMi-I repbase;    DNA;    INV; 6492 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6492
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(390..710,664..1053,1163..1435,1439..1687,
FT                 1705..2403,2544..2921,2881..4152,4156..4686)
FT                 /product="Gypsy-58_LMi-I_1p"
FT                 /translation="MLTRSRARLLNNKSNLVQYFNMSDKEQDLVETQTSKR
FT                 RSARHSRDVSRESFKEKRDISSRRGSYTESSESDGEKEISRHSTVILIKFT
FT                 HTVTMERHTPRPSSQYRSFRWSVILRAQVHNTGPSRASTPGGRYDNIQNAD
FT                 LMRFLQELEKNRERDSQQQTELLLGRLKKVSEDIGQVKEEVVKVHKTATEA
FT                 KQTSLEAKRDARLARYEASRAKKLRNQQKCSRKVMYQGSEVKKVVIRREQI
FT                 KITKKQNELEQHIKSTREEVQLLSSNSSETARAINDERVLQNVQQRSELLH
FT                 ESQRVEINQSPTQRSLVREESTPHSEPVSHPCPEFQEDNCCRLRRSDTRLQ
FT                 ETADSGRCISNDLNPRHTQVRDREIFRREERTYESFDLKHFLSVQNFKFIK
FT                 KAIILCTRNLLCLNSRKPLQYRLEFICGHMQGSVAEHMRSVANSCQSYEEF
FT                 RNIFLAAYWSSRTQERIKEEIIFGKDMESAGYKDPEKFLESLVKKNRFLDN
FT                 PFTQQELMKHCFARLPIVYQRSMIGKCEGTLDQFISAVRQAEYVENRQGWR
FT                 SRETRERDNSAQYWERNNNYNSDRGRGGNKPHKQNLSSQPGNNNQGQGNWH
FT                 DYGNQSRSNNANQGNQYGQSQQNPRWRQNIRMASKAETMVILNGETRYVPA
FT                 VGAPPVSAETLGFSTLYLLEYEDIREILKEEKQTISREEIHPIVTVQIGNV
FT                 HLTAIIDSGSQISAISESAFQKCAKDHSWPTLKLKKAKVKGAIIGKQADIQ
FT                 MQSRMTILCQGQEWDINLKQYFVKDRNGTLTSNSAYVGDNLIIGMDFLSDQ
FT                 KATLDVGRGVLVLNKEGSVTIRFSDQHLRSEIPADCLRLSSSDYQGQSNVM
FT                 SHNSGSGQYEQYDILLEEVTAIINEVLAKQTNISPNDRQELGRVLNENAEV
FT                 FFPKTGAIKDFVYSFKVKPHQKFAVAPYSIPAAHRETVRKELKRMEDEGVI
FT                 ERTTSTYNSPLVVIEKQDKSVRLVLDXRQINTIIEPETDRPERIDELLQNF
FT                 HGAQVFTTLDLRSSFWQIALDPECRQYTAFVAFGTCYRFKRLPFGLNVSCS
FT                 AFIRGFDTVLPSWIKERITTYVDDLLIAEPNWEQHNIVLREVLRAFRQFGL
FT                 TVNIKKSCIGTPKVKYLGHIISADGIAPDPDKMETIAKFPTPVNKRQLRGF
FT                 LGIINYYKRYILIKKTGYATPLFSHRKEHYLELGRGRSGIPEFEASMLEAP
FT                 ILSHPNFSEELCMATDSSYTGLGVMIFQKYVDGGNPVFKTIAFGSRILNKA
FT                 ERNYSVTELEALAVVWGFEKFRYFLYGRKTRVYTDHKALQFIMTAKLKNKR
FT                 IARWVLTLQEYDFTIEHVPGVENIIADALSRSPVGFEELGHQPLEQEHYSL
FT                 YYIKKAVX"
XX
SQ   Sequence 6492 BP; 1987 A; 1278 C; 1488 G; 1658 T; 81 other;
     tttggcgacc ctgccatagg atctttcggg cagtggatgc ttctgggaag taggcagatt        60
     aatttctgtt gcaatcaggt ccattagcga taagatttgt agttagtata tgtgcgcaac       120
     gcttaataac cattgccttt cagcattcaa agtgtctgtg gtttctgcac cactctgcat       180
     tgtttactgc attgtttaat ggcgttgact atttgtgaat attttggagg ggtatttaaa       240
     aatatttggt aaacaataat tgttcatatc atagggatat tgtgtcagta tatttttgca       300
     aattttatat cttttgtcat ttgtaaatcg ggatatcatt gtatggcgag ggaaagtgat       360
     tttatatgta gtggttcaga gtaaaattta tgttaacaag gagcagggct cggttactta       420
     ataacaagag taatttagta caatatttca atatgagtga caaagagcag gatttggtag       480
     agacgcaaac gtcaaaacgt cgttcagctc gacatagtcg cgatgtttcg agggaatcgt       540
     ttaaggagaa gagggatatt tcatctcgca ggggttcata tacagaatca agcgagagtg       600
     atggtgagaa agagatatcg cgacactcaa ccgtaatcct cataaaattt acgcacacag       660
     tgacgatgga gcgtcatact ccgcgcccaa gttcacaata ccggtccttc tagagcgtca       720
     acaccaggag gcagatatga caatattcaa aatgccgatc taatgagatt cttgcaggaa       780
     ttagaaaaaa atagggagcg tgatagtcag caacagactg aactactgct agggcgtctt       840
     aaaaaagtta gtgaagatat aggacaggtg aaagaagaag tagttaaagt acacaaaact       900
     gcaacggaag cgaaacagac ttctttagaa gcaaaaaggg atgctagact ggctcgttat       960
     gaggcgagta gggcaaaaaa attgcggaat cagcaaaagt gtagccgcaa agtcatgtat      1020
     caaggtagtg aagttaagaa agtagtaata cgttgagaga acaaggaaag aatattgtcc      1080
     gcgatacact aaaaaaattt gcaaataccg cgaaagagat agaagaaatt aagagtaacc      1140
     aatctgttat cccagctatt aaagagagca gattaagatc acaaagaaac agaacgagtt      1200
     agagcagcat attaaaagca ctcgggaaga agtacaactt ctctcgtcaa attcctctga      1260
     aactgccaga gcaataaatg acgaacgtgt cttgcaaaat gtgcaacaga gatccgaact      1320
     gttacacgag tcgcaaaggg tagaaattaa tcagtctcca acacaaaggt cacttgtgag      1380
     ggaggaaagt actccacaca gtgaaccagt gtcacacccg tgcccagaat ttcagtagga      1440
     agacaattgt tgtcgactcc gacgctctga tacacgcctt caggaaacag ctgattccgg      1500
     gaggtgtata tcaaacgatc tcaatccgcg ccacacacaa gttcgtgaca gagaaatatt      1560
     ccgaagggaa gagcgaacgt atgagtcttt tgacttaaag cactttcttt ctgtacaaaa      1620
     cttcaagttt ataaagaaag caataattct ctgcacccga aatcttttat gtctcaattc      1680
     gagaaagtga tgcccacatc atagccatta caatatagac ttgaattcat ttgtgggcac      1740
     atgcaaggta gcgtggctga acatatgcgt tcggtggcaa atagttgcca atcgtatgaa      1800
     gaattcagaa acatatttct tgcagcgtac tggtcttctc gtacgcaaga aaggattaag      1860
     gaagagataa tattcgggaa agatatggag agcgcggggt ataaagaccc agagaagttt      1920
     cttgaatcac ttgtaaaaaa gaacagattc cttgacaacc cgtttacgca acaggaatta      1980
     atgaaacatt gtttcgcgag gctgccgatt gtttaccagc gcagtatgat tggcaaatgt      2040
     gagggcacac ttgaccaatt tatcagtgca gtaagacaag ccgaatatgt cgaaaataga      2100
     cagggttggc gcagtagaga aacccgggag cgggataatt ctgcccaata ttgggagagg      2160
     aataacaatt ataattctga taggggacgt ggtggaaaca aaccccacaa acagaacctt      2220
     agtagtcaac caggtaataa caatcaaggt cagggaaact ggcatgatta cggcaatcag      2280
     agcaggtcta ataatgcaaa tcaggggaat caatatgggc aatctcaaca gaacccgaga      2340
     tggcgtcaaa atattcgaat ggcttccaaa gccgaaacaa tggtaatcct caatggagaa      2400
     acataataat aataataata acggtgggtc ttgggtagtc aaaggcgccg agtccattca      2460
     tgcaaagagg tgtagaagtt ttgaaataag acccgaatcc tgcacccgca aacaatggca      2520
     acagcagaaa tgacagtatt tgacgctatg tgcctgcggt aggtgcgcct cctgtctctg      2580
     cagaaacact cggattcagc actctgtatc ttttagaata tgaagatata cgagagatat      2640
     taaaggagga aaaacagacg atttcccgag aagaaattca cccgatagtt acagtccaaa      2700
     ttggtaatgt acatttgact gctataatag acagtggcag tcagatttcc gccatttctg      2760
     aatctgcttt tcagaaatgc gcaaaagatc attcgtggcc gactttgaaa cttaagaaag      2820
     cgaaagttaa aggggcaata attgggaaac aagcagatat tcagatgcag agtcggatga      2880
     caatactttg tcaaggacag gaatgggaca ttaacctcaa atagtgccta tgttggcgac      2940
     aatttaatta ttgggatgga ttttctatcg gaccagaaag ccacgctcga tgtcggacgg      3000
     ggtgttctgg tattgaataa agagggaagt gtcaccatcc ggttttccga ccagcatctt      3060
     agatcagaaa taccagctga ttgcctacgt ctgagttcgt cagactatca ggggcaaagc      3120
     aacgtgatgt cccataattc aggcagcgga caatatgaac aatatgacat attactcgag      3180
     gaggtaacag caataataaa tgaagtgctt gccaaacaga caaacatttc accgaatgac      3240
     agacaggaac tcggtcgtgt attaaacgaa aacgccgaag tattctttcc aaagacaggg      3300
     gctattaaag actttgtcta ttcctttaaa gttaaacccc atcagaagtt tgctgttgct      3360
     ccatactcaa ttcctgccgc tcatagggag acggtcagga aggagttaaa aagaatggaa      3420
     gatgaagggg taatagagag gacaacctcg acctataatt ccccacttgt cgtgatagaa      3480
     aagcaagata agtcagtacg ccttgtctta gattmcaggc aaataaacac aattatagaa      3540
     cctgagacgg acagaccgga gcgtattgac gaattattac aaaatttcca cggagcgcaa      3600
     gtttttacga ctcttgacct caggtcaagt ttctggcaga tcgcgttgga tccagaatgc      3660
     agacagtaca ccgcatttgt agcatttgga acttgctaca gatttaaacg actaccattc      3720
     gggctaaatg tgagttgttc cgcatttatt aggggatttg acaccgtact acctagctgg      3780
     attaaagaga ggattacaac gtatgttgac gacctcctta ttgccgaacc caattgggaa      3840
     cagcataaca tcgtgctccg agaggtactt agagcctttc ggcagtttgg attaacagtc      3900
     aatataaaaa agtcatgcat agggacccct aaagtgaaat acttgggaca cattatttct      3960
     gcggatggga ttgcaccaga cccagataag atggaaacca tagctaaatt tccaaccccg      4020
     gtaaataaga gacaattaag aggtttttta ggtattataa attattataa acgttatatc      4080
     ttgataaaaa aaactggcta cgccacgcct ctgttctctc accggaaaga acactatctg      4140
     gaattgggac gatgaggcag aagcggaatt ccagagtttg aagcaagcat gctggaggct      4200
     ccgattttgt ctcatccaaa cttttcagaa gaattatgta tggcaacaga cagctcatac      4260
     acgggtttgg gcgtcatgat atttcagaaa tatgtagatg gtgggaatcc tgttttcaaa      4320
     acgattgcat ttgggagcag gattcttaac aaagcagagc gtaactattc tgtgaccgag      4380
     ttggaggccc tagcggtagt atggggtttt gaaaagtttc gatactttct gtacggccga      4440
     aaaacccggg tgtatacgga ccacaaggca ttacaattta tcatgactgc gaaattaaaa      4500
     aataaaagaa ttgctcgatg ggtgttgaca ctgcaggaat atgatttcac catagaacat      4560
     gttcctggcg tagagaatat aatcgccgac gcactttcga ggtcacctgt tggtttcgaa      4620
     gaattgggcc atcagccact agaacaggag cactacagtt tgtactatat taagaaggcc      4680
     gtakagtagt aatagtattt gmcgcatawt agagatwwtm atgwtagtat ttgwtagkat      4740
     gggtcaagak tggccattaa kgkaatkgtt wtacatacgc acgccwtggt gaccmgtatt      4800
     ccagagttgc tgtgcgaggg cgagagcgtc aaggcggcgg agaatgagag ggaaagttcc      4860
     cgcaggggac cgcctgctkt ctggttacag gkctgccgca gggscgacac actcgtgaca      4920
     ctcgccggcg gggcmcattg agggaagcta cctgttgcgg gccgcsccga tsacccacsg      4980
     agataagtgg ggcggctkac akkcgggcgc acaaaagcag ccgtcackca gaggcagcgg      5040
     cacgggccaa accaccgcgc wacccmgctc accgcggccg aacaagagcg ctwgactgct      5100
     tgtcgccagc cggcaggcac gggggcatcc ccctwtcaaa tacagccgac cacakcccam      5160
     gagmcacgcg cctccctcgg ggagaacctt cgctcggcwc taaccgccca cgggggccgc      5220
     caccgcagac agcatgacgc ctctccccgc cacgtgtcca cgtccgccam cggccggctg      5280
     ttagcwgacg accgctcmca ctcaactcam ccgscgatgc mgcgactgct gggcgctgcm      5340
     cctcggtwcc ctacgatagg ckkgcgttct tctgagggat tttatccgga aggagaacaa      5400
     aggcctagga ctgagatttg cggtgcwgct cagcatcatc agagaccgtc kagacggcat      5460
     mgctcctgtt cctggtcgca gatccggggc tatccasccc actccttgga ccgtcgcttc      5520
     tagagamacc awcgccgtgg tgtgcacagc cgtggacaca gacagtaaca matttcacac      5580
     agcaccactc aatgaacatt tgcwtgtgga cactaaataa accactgaat aatttaacaa      5640
     gggctcagaa taattcttgt ctgtcaacat ctgtaggtta tttaggttca tcagtakagt      5700
     tatgatttga ttakatttat tcttgcactt gtccagtgta caagcaatmg mttttttttc      5760
     wtattctcag wcatattcmk tttactgaaa catttgtgcm ttgtttttaa ttgtgatgtt      5820
     tagcaataga gttatgattc tattagattt attctttcac ttgtccattt tatacmatag      5880
     cgtagtctta gcaatatast aacttcwttt ttcwtwttca gttttagttt actgmaacwt      5940
     tttgaacttg gtttttgatt agtagtgtga tttttaaatt gttaagaaac catactcatt      6000
     tatagagcat tcttacgatt ttttttattt attacagtgg ggtataatgt atgtctatac      6060
     ttatccttca taagtagtat gtttasattc tctaatttct tttccacttt cctatctttg      6120
     ggtatgaatg tgtttaattg atatctaggg tccakaagac atackaagaa gactgaacca      6180
     atagsattgt aataatttgt ggtaatttgs ggcctggats gccagaggca acataaccaa      6240
     gtataaatcc accccttgta actctccaca aaaaaaagaa agataggttg aatgagtggg      6300
     gccctagagt atgggtatgt atgtagattt tatccatatt attccatatt caggatgtac      6360
     tagtacaaag gtttaattca tattgactgg ctatactcta gtatacttcc wtattgtgaa      6420
     tasgagaatg tctcctgtcc gatccttgta tsagactacc cacatccgaa attttaatcg      6480
     gtgggsgkgg gg                                                          6492
//
ID   Gypsy-58_LMi-LTR repbase;    DNA;    INV; 1989 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1989
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 1989 BP; 524 A; 357 C; 484 G; 624 T; 0 other;
     tgagaggtag taatactatt tatattcata ttttccaatt tcatttagtc tgtcgattta        60
     attggatgtt gggttctttg tattctaatt tctccaaatt cttaatgcca gatgatagaa       120
     atgatcattg catgattttg gtacattggg aataagccac ctgggtaatt gtttttaggc       180
     gcttgccgcc accagcgaaa aacgtgggag agaatgctgc ccttgtttcg cggccagcgg       240
     tgtataaaga tacgggacag gatgtcgccc cagccccggg ggttggggag agagaggcgc       300
     cccgggctcg ctcggtcgct ccggggagtc gaagggaaag cggggccggc agcattgtgt       360
     acgctgcctg gaccctcgcg gtcggctggc gccaaacttt acgacttttg ccggcgccac       420
     gttggcgagg cgtgggttgc tgagggctct cacgacggga gagggcgccc atgcgataat       480
     aaaataattt agccgtctgg agatgcctat cgtgaaacac aaaatttcac gctgcttctg       540
     ggaactgtgg catacgtgag tctcaggcct gggaaagttt tcgaggggga ggagcttagt       600
     agcgctaaca atagcaaatt gatttgattg gcgagaccat taggtcctct ctcttactgg       660
     cttgacgtca catgtgggtg gagtctggca gccaaagaaa gttttttctt gaggagagcg       720
     tggtgtgagg gagagaaaag gggagaagcg tggaggacac cggacggttc ggacctcttg       780
     gtagcagcga ggagtggcgg caaggactcc gaagttttcg gaccttgcga gtcggtggac       840
     ttagaatttt tgtgcccatt gcacagtgtt agatggcgtc tgtgtgattg ctgttcgcat       900
     tcacagttat actgagaaac ttgtaaatat tctgaagtgg gtgttgtttt agaacaagct       960
     cactcgtaat caggataatt tactgttctt gaataacagc atacaccact gggttggaaa      1020
     attgctgtat tttttcgtag ctcgaatact ttagtaattg ccgcgccgat cgggtagata      1080
     atttcccatc cgcgatcgca ttcatcagcc tgctcttcca tcagcggccc atcgacatcg      1140
     gtgacgctgt tcaactgtat atggtaaagt agcgccaacg cataaatagt gaaaaggatt      1200
     attgaatggt ggttgatagg tgggacgtag gtgtgagttt gcgaggtcgt catagtcgat      1260
     ttttaatcga gcgtgtctgt ttcagtactt aaccttctac tgacttttta aatacatttt      1320
     tgataggtta acacaccaaa tttatgacta tagccagtcg aacttgtacc ttttcttttg      1380
     gtgttaagat tttgtccttt attctgtaaa aagtattccg atcattagat aattttgttt      1440
     gtgctatttc aagtcattat ttttgtatga tttttttaaa aggaattgac acttttttca      1500
     cgcatgtcgt gtttttgata aattggcaca taaatttttt gttaaataca gtaactattt      1560
     atgaacatcg tgtacctgat ttcaaccacc tttcatatat tttggagggg ttatctcttg      1620
     tctatgttag gtaggtcagg ggatttgtgt gcttccaaca acagtgtatg gaaacacgca      1680
     ctttcacaaa ataaataaat aagtgagatt agactactgg tcgccactac tttcagttag      1740
     gcacagtaaa ttctcagttt catattttta ataatttttt ctatttttta aaataataat      1800
     aaaaaaatag tggcgaccct tggataactt gattgttttg tgatgatggt taatttaaat      1860
     acaatttatt catttgcata ttaatgagct atctgcaaag ttggcagaaa aggtaataga      1920
     actcaaatga cggacaacat tcagttgaca ttcaaaataa taaattttga aaagagcaac      1980
     aacatttca                                                              1989
//
ID   Gypsy-58_MSe-I repbase;    DNA;    INV; 4305 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4305
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 935-935 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. There are only 2 full-length
CC   copies of Gypsy-58_MSe in the genome.
XX
SQ   Sequence 4305 BP; 1303 A; 775 C; 1014 G; 1211 T; 2 other;
     attggcgacg aggatgggaw gtgaagttgt gcaaacggta taaaataaac atatcaagct        60
     gtactagtga aatgacggat aaaatgtcga ttggtgtaat aaaggaattt gaccttgctc       120
     aaggtaattg gaggtcatac gtcgaacgat taaaaatgta tttcaaagca aatgacatca       180
     aagaagaatt gcaattggcc acgctgatag cagtggttgg tgatcaaaca tacgaattat       240
     ttgttaattt ggtgagtccg aaaaacccgc agatttaaaa ttcgatgagt tgacaagttt       300
     ggttgctgac catttgcaac ccaaaccttc aataatggct gagcgttata aatttagaca       360
     gcgaagacaa cagtcaggtg aaactgtatc gcaatttgta gctgaattga agaggctgtc       420
     acgacaatgt gagttcaaag aaactttaaa cgacaatctt cgtgatcaat ttgtgtgcgg       480
     gttaaccagt gacgtcatcc gacagagact ttttgctgag tcagacttat cgtattcata       540
     tgcagtcact ttggcaatgt cattggaagc cgccgaaaga gattctgcgg cggtggaggg       600
     taacaaggcg aacacatcac aaggtgcgga cggattatac gatataacgg tagcaaatta       660
     tcaacacgcc ggcagcggtg caacaaaaga aaatgcgggc agttgttcwa tatgtggtat       720
     ttttggacat cgtgctatgc gctgtcgtta caaacacttc aagtgcaatg actgtgggaa       780
     agtgggccat ctgaagcgta tgtgtccccg gcgccaacgg ggaagtgaag agagtgcgcc       840
     tcgtcggcga actacaagca agctgcgtca ggagcctgca tattttgttg ccgaggtgcg       900
     caatgaagga agaactgaaa ttggtcactc gtcagaatcg gatggggaag tggaagcgat       960
     gcatcagatg tccttgagaa agtacccagc ggtaaacatt acaattttgt agaaagtata      1020
     ccaatttcaa tggaaataga ttcaggtagt ccgtgctctt gcattagtaa aaatacatat      1080
     ataaaatatt ttaatgagtt acccttacat aattgtaatt tgactttaag ttattatact      1140
     ggtaaaacgg ttaagccttt aggattaatt acaccgttag tccaatatgg taatatatcc      1200
     agacgtttgg acttgtatgt tttgataatg gtaaaactcc actgttgggc cgtcagtggc      1260
     tagctgagtt aaaaattaaa ttgcctatgt ttcatgttaa caacttatcg gttgatgcgt      1320
     gtatgcataa taataaggaa gttgcgatac ttgttaacag atacagtgag ttgtttgatg      1380
     gagcgctggg ccggtacacg ggcggtcgag cgacgcttca cgtgcgggag ggcgccgtgc      1440
     cggtgttctg tcgcgcacgc cctgtgccgt atgcgctgcg cgaccgagtc gacaaagagt      1500
     tagacagcat gttagaaaat ggtactattg agccggtgga acattctgag tgggctactc      1560
     ctttagtttt agtgaataag tctgacggaa aattacgagt atgtgctgat tttaaagtaa      1620
     cgttaaaccc cgtattattg gttgacaaat atcctttacc tcgtatagag gaccttttgt      1680
     ccaaccttag tggtggtatt catttttcaa aaattgatct gtcgcaagcc tataatcaaa      1740
     ttgaattaga tgaaagctca agaaaataca cggtgattag tacacaccgt ggtcttttta      1800
     atataacaga ttagtatatg gactagcttc aagtccggga atcttctcta gaattactac      1860
     cagcctcttg tctgatatcc caggtgtatc agttttttgt gatgacgtgt tagtgacagc      1920
     atcaacaagt caagggcatt tacaggctct caaggaggtg tttgaaagat taaagcgaag      1980
     tggtctcaaa ataaacaaaa ataagtgcgt attttttgcc gactctgtca gctacttagg      2040
     tcatattata gataaaaatg gtattcgaac agatccagat aaaataaaag ctatcgtgga      2100
     tttgcccagg ccaaccaata ttactgaact ccgatctttt ataggcatgg ttaattttta      2160
     tggcaagttt attaagaatc ttagcatgca tttagctccg ttatttaagt tattaaaaaa      2220
     atcatctgag tggtcatgga atcgcagctg tgatcatgtt tttgaacaag ttaaaggatt      2280
     tctcacaagc gcggaggtgc tagcacatta tagtctagac aaaccaataa tagtaacgtg      2340
     tgatgccagt gcatatggta tcggggctgt cctatccaca ctagattcaa taggagaacg      2400
     acccatttgc tatgcgtcgc gtgccctatc cgaagcagaa aaacagtaca gtcaaataca      2460
     acgggaagct ttggccattg tttttgctac aaaaaaattt caccaataca tttatggaag      2520
     aaaatttatt ttaaaaaccg accataaacc tcttttagca atttttgggc caaagtgtgg      2580
     cataccgtta atggccgcca gtcgtttgca aagatgggcg gtaactttat ctggctatga      2640
     ttttgtaatg gaatatgtca aaactgataa taatgctgct gacgcgctat caagacttcc      2700
     tttaaagtgt gagtcatcta ggaacttacc tgagcagact tatttgcatt ttgctcggga      2760
     cgctttttta ctagaccata gggcattgcg actagaaaca gtgaaggacc caatattagg      2820
     acgcgttttt agctatgtcc gtgacggttg gccggataag actgatatga aacaactaca      2880
     gccctatttt aaccgcaaac atgaaattta tgtagaatcg gactgtctaa tgtgggggca      2940
     tagagtgatt ataccagata aatataaaaa ctagttctgc gtgaattaca tgaaacacat      3000
     ttgggaatga tgaaaatgaa aagtctagct aggagctatg tgtggtggcc gggtattgat      3060
     gaaatgattg aagctgagtg tcgggcgtgt gggacctgcg cctcgcaggc ttcttcacca      3120
     ccagctcaca ctccgtgccc atggccatgg ctaggtcgac cctggaggag aatacattta      3180
     gactttttgg gtcccgtggt aggaagtact ttcttagtgg tcacagattc cacctcgaaa      3240
     tggatagaag tttttaaagt gagaggcaca tcggccaaag aaattataaa aatattaaga      3300
     cagttgttta gtcaattcgg attgccaact ttagtggtgt cggataatgg tccacctttt      3360
     tccagtacgg agtttaagtc attttgacaa ataacggtat tgctcaaaca ttttcggctc      3420
     catatcaccc gtcatcaaac ggagccgccg aaaatgcggt aaaaatatgt aaaagggtta      3480
     taaagaaagc tatatgcgat aatgtagaca ttgaggtagc gctgcatcgg ttcttattgc      3540
     tttatcgcaa tacggaacat gcaaccacgg gagaaagtcc agcacgcgtc ttgcaaggga      3600
     ggtctttaag gacacggtta gatgctttgc gaaaggatag gagcgagaca ataaaaatgg      3660
     taagggcgtc cgaaaaacta gaacagcgcg ggtcgcgtcg agagttacat atcggtgatg      3720
     acatttattt aaaagattat agcaagaggg gagaatggac tgaaggtcaa gttattgatc      3780
     gtcttggtag gacaaattat agagtgcgct catctgatgg gaagtgttct catcggcacg      3840
     tcgatcagtt aaatcgtaga tccagtgttg tggcagctaa ctcgttaccg tcggattcgc      3900
     tagggctagg ggatggcctc gtggatgcca cctcagataa aattacgact agtgagtttc      3960
     aatctgtacc atcttttatc aattcagaaa atgtttcaaa gcagtcacat cagtctgtgc      4020
     cggacacggc agatgcacag gtgaaactta gttcagtggc gcatacggca cattctcctg      4080
     aacgacgctc acccagctct cctatccgat cccgctccaa acgtgcccgt gttccggtta      4140
     aacgctatgg atttgatttt gattaaaaag tatatatata attatatata aaaaatagaa      4200
     gataaaaagg ctttttctta ttgtgttgat tttgtgaatt taataagttt atgtaacgtc      4260
     atcattagct aaaatagaat ctattatcta gaataagtgg tgagg                      4305
//
ID   Gypsy-58_MSe-LTR repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   30-DEC-2020 (Rel. 26.02, Created)
DT   30-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-227
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 984-984 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 5-bp TSDs. There are only 2
CC   full-length copies of Gypsy-58_MSe in the genome.
XX
SQ   Sequence 227 BP; 78 A; 31 C; 38 G; 79 T; 1 other;
     tgtamtatag taagcctgta tcacaaacat gttaagtgtt attcatatcg taacatcttg        60
     gacaaacaaa cattatatat aaggattaat atcttaatat taatgaaggt agattgtcga       120
     ttgttgtggt acaactaccc cgcttttacg aatgtgtcag ttaatctgtg aataaatggt       180
     gaacgtaacg gatgtatttt atttatcgta aatcgtaata cacacta                     227
//
ID   Gypsy-58_SiCu-I repbase;    DNA;    INV; 4033 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4033
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5078-5078 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..4018
FT                 /product="Gypsy-58_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAVTRINAFNPSCDDIEAWTSVLQNFLVASGVDKSKD
FT                 DQKDKATAILLSSIGVPTYTLLKDLVSPDAPESKKFDDLVTVLKNHYKPAP
FT                 KAISERFRYFNRRQQQGESVTVFLSELRKLAVTCKFENLEISLRDQFVVGL
FT                 SSEAAQKMLFLEDDTMKLEDAVKIAISQEAADASTKLIRQANQSNQPLATN
FT                 LVSSKSSSKKNGEWKPSSSSKDDSEPKCHGCGSKKHFLKECPHKDVECYKC
FT                 HNKGHYAKYCSKASGGKQKGNKSTVNNVQDEEPPPPAIVIEVQMNGRFVNL
FT                 EWDTGASRTFISHSVWKKLGSPKLKKSSVKFTTYTGEDFESKGTFDCQIEY
FT                 NNQKINHVIFVTVNDGSCLFGRDLLYKLQMDWPRIKRQCMQVNKVNAEENL
FT                 KSLLEEFKDVFDEPVGTVKTFKAKLFLKEDAVPKFCKARPVPFALREKVDA
FT                 ELQRMEESGVITRLEHSDWASPLVVVPKANGRVRITGDFKRTINSQLLVNQ
FT                 YPLARVDDLMETISGGSTFSKLDGSDAFHQVQVEEHCKKFLVVNTHRGLYR
FT                 YNVLPQGIASSPAIFQEMMDHLLRGIEMTGSFVDDAITTGKDDQQHLSHLR
FT                 QILTRMREANYRLSRSKCEFMKESVKFLGYIVCGDGIRTDPEKVEAIVGMK
FT                 QPENVGEVSSFLGLVNFYGKFIPHFSTLCEPLFSLTKKDVEFEWNRKCKIA
FT                 FNKVKQLVSSSPVLEHYDQNTPVGIACDASSVGCGVVLFHRNADGTEKPIA
FT                 FASKTLTAAEKNYSQIEKEGLSIVFGLKKFMKYLFGHRFILVTDHAPLLAI
FT                 FGDKRDVPALVATRLHRWALLLSGFSFDIEYRNTHAHGNADALSRLPVPDC
FT                 FEEDEEANNTVKRIKEENPITTKKVRYQTSRDQVLSHVIRFVQSGWPQKLS
FT                 QVPEDMKPFYSHRYEFSVEQGIVMWGIRVVVPSSLRPSILAQLHDTHPGIV
FT                 RMKSLARQFVWWPGVDADIETVVKSCQACCQSRDSPATAPLHPWSFPEKPW
FT                 QRIHIDLAGPFLDKMWLIVVDAYSKWPEVIALGKDTTSRKVIHSIRELIAR
FT                 FGIPDTIVSDNGPQFVSAEFEAFCENNGIRHTKSSVYHPRSNGEAERFVRT
FT                 FKNGLSHCQVGDDLNLALCDFLLMYRITPHATTGASPSELMLKRKPRTLLD
FT                 LIRPDADSHVRANQEKQVENQGSSKMRQFEVGHSVWIRTFGKNDPSWSLGK
FT                 VVKVQGPVTYIVDVDGRTYKRHVDHILDGKVISRKPVENQVADQDDEDFVF
FT                 PSPEPEEEEEIPDEPEEEPVRDRRYPQRSRRAPVRYPSK"
XX
SQ   Sequence 4033 BP; 1115 A; 778 C; 1061 G; 1079 T; 0 other;
     tttggcgacg agtatttttg aaacccactt ttgttttgtg gtattgactt tgctgttctg        60
     gagtagtttg ttttttaatc attgttaatt gattaattag ttgctgaaag tgttcgagat       120
     ggctgtaaca aggataaacg cctttaatcc aagttgtgat gacattgagg cctggacttc       180
     cgttcttcaa aattttctgg ttgcatccgg agtggacaag tctaaggatg atcagaagga       240
     taaggcgacg gcgattttgt tatcgtcaat tggagttcct acatacacgc ttttgaagga       300
     tctcgtttca cctgacgccc cagagagcaa aaagtttgat gaccttgtaa cggtgttgaa       360
     gaaccattac aagccagcac caaaggcgat ttcggagcgg tttaggtatt ttaaccgccg       420
     ccagcagcaa ggagagagcg tcaccgtgtt tctgtcagaa ttgaggaagt tggcagttac       480
     ctgcaagttc gagaatttgg agatttcgtt gcgggaccag tttgtcgtcg gcttatcatc       540
     agaagcagct cagaagatgc tctttttgga ggatgacacg atgaaactgg aggatgcggt       600
     gaaaatagca atcagccagg aagccgctga tgctagtacc aagttgatta ggcaagctaa       660
     tcaaagtaat caaccccttg ctaccaacct tgtcagcagt aaaagttcca gcaagaagaa       720
     tggagaatgg aaacccagca gcagttcgaa agatgatagt gagccgaagt gtcatggatg       780
     tggcagcaag aagcattttc tgaaggagtg cccccacaag gatgtggaat gctacaaatg       840
     tcacaacaaa ggtcactatg ccaagtattg ttccaaggcg agcggaggca agcagaaagg       900
     gaacaagtcg actgtcaaca atgtgcaaga tgaagagcca cctccacctg caattgtcat       960
     tgaggttcag atgaatggac gtttcgtcaa tttggagtgg gatactggag cgagcagaac      1020
     cttcatttca cattcggttt ggaaaaagct gggatctcca aaattgaaga aaagtagcgt      1080
     caagttcacg acctacactg gagaagattt tgagtccaag ggaacttttg actgtcagat      1140
     cgagtacaac aatcagaaga ttaatcatgt catttttgta acagtaaatg acggttcatg      1200
     cttgtttgga agggacttgc tgtacaagtt gcagatggat tggcctagga tcaagaggca      1260
     gtgcatgcag gtcaacaagg tgaacgcaga agaaaatttg aagtccttac ttgaagaatt      1320
     taaggatgtt tttgatgaac cggtgggaac tgtgaaaact ttcaaggcca agttgttcct      1380
     gaaggaagac gctgttccaa agttttgcaa agctcgtcca gtcccatttg cattacgtga      1440
     aaaagttgat gcagagttgc agaggatgga ggagtccggt gtcatcacaa gattggagca      1500
     ttcggattgg gcgtcaccgt tggttgtcgt gccaaaggcc aatggcagag tgagaataac      1560
     tggagatttc aagaggacca ttaattctca gctgttggtg aatcagtacc cgcttgctcg      1620
     agttgacgac ttgatggaga ctatttctgg agggagtaca ttttccaagt tggatggatc      1680
     tgatgcgttt caccaggtcc aagttgagga acattgtaaa aagttcctag tcgtcaacac      1740
     gcatcgtggc ttgtatcgct acaacgtttt gcctcaaggg attgcttcat ccccagccat      1800
     tttccaggag atgatggatc acctccttcg tggaattgag atgactggtt cgtttgttga      1860
     tgacgcaatt accaccggga aggatgacca acagcatttg agtcatcttc ggcagatttt      1920
     gaccagaatg agagaggcaa actacaggct ttcaagaagc aaatgtgagt ttatgaagga      1980
     gtcagtcaag ttcctgggat acatcgtttg tggagatggt atcagaactg accccgaaaa      2040
     agttgaagcg attgtcggaa tgaagcagcc tgaaaatgtt ggagaagtca gctcattcct      2100
     tggattggtg aatttttacg gaaaattcat accgcatttt tccaccttgt gcgaaccgct      2160
     gttcagtttg acgaagaagg atgtcgagtt cgagtggaat aggaaatgca agatcgcgtt      2220
     caacaaagtg aagcagctgg tgtccagtag tcctgttttg gagcattacg accaaaacac      2280
     tcccgttgga atagcgtgcg acgcttcatc ggttggctgc ggagtggttt tgtttcatcg      2340
     aaatgcagac ggaactgaga agcccattgc atttgcgtcg aagaccctca cagcagcaga      2400
     gaagaactac tcccagattg agaaggaggg actcagcatt gtttttggat tgaagaagtt      2460
     tatgaaatat ctgtttggac acagattcat cttggttacg gatcacgcac cgttgttggc      2520
     catttttgga gacaagagag atgttccagc tctcgttgcg actcgtcttc accgttgggc      2580
     attgttgttg agtggatttt cgtttgatat tgagtatcgt aacactcatg cccatggtaa      2640
     tgctgacgct ttgagcagac taccagttcc ggattgtttt gaagaagatg aggaagccaa      2700
     caacacggta aagcggataa aagaagaaaa tcccattacc acgaagaaag tgaggtatca      2760
     gacttcacgt gatcaagttt tgtcacatgt aatacgtttt gttcagtctg gatggccaca      2820
     gaagttgtct caagttcctg aggatatgaa gccattctac agtcaccgtt acgagttttc      2880
     agtggagcag ggaattgtta tgtggggaat acgcgtcgtt gttccgtcat ccctacgacc      2940
     ctcgattttg gcgcagttac atgataccca tccgggtatt gtgaggatga agagccttgc      3000
     aaggcagttt gtttggtggc caggcgtgga tgctgacatt gaaactgttg ttaagtcatg      3060
     tcaagcttgt tgtcaatctc gtgacagccc agccacagct cctcttcatc cgtggtcatt      3120
     tccggagaag ccttggcaaa ggatccatat tgacttggct ggcccttttt tggataagat      3180
     gtggctaatt gtagtggatg catatagcaa gtggccagaa gtcatcgctc tcggaaaaga      3240
     cacgacatca aggaaggtga tacattccat ccgggaatta attgcaagat ttggcattcc      3300
     ggataccatt gtcagtgata atggaccaca gttcgtgtcg gcggaatttg aagcgttttg      3360
     tgagaataac ggcattcgtc acaccaagag cagcgtgtat catcctagga gtaatgggga      3420
     agctgaacgt tttgttcgta cgttcaagaa tggattgtct cattgtcaag ttggtgatga      3480
     tctgaatttg gcattatgcg attttttatt aatgtatcgc attaccccac atgccaccac      3540
     tggagcctcc ccatccgagt taatgttgaa gagaaagcca cggactcttt tggatctcat      3600
     tcgtcctgat gcagatagtc atgttcgtgc taatcaagaa aaacaagttg aaaaccaagg      3660
     aagttccaaa atgcgacagt ttgaagtggg tcactctgtt tggattcgca cttttggaaa      3720
     gaacgatcct tcttggtcat tgggaaaagt ggtgaaagtc caaggtccgg ttacttacat      3780
     tgtggatgtg gatggtcgca cgtacaagcg acatgttgat cacattttgg atggaaaagt      3840
     catcagtcgg aagccagttg aaaaccaggt tgcagaccag gatgacgagg attttgtttt      3900
     cccatcgcca gaaccggagg aagaagagga gatccccgat gagccggagg aggaacctgt      3960
     gagggacagg cgctacccgc agcggagtcg tcgagcacct gttcgttatc cctcaaaata      4020
     aaagggaaag gaa                                                         4033
//
ID   Gypsy-58_SiCu-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   01-JUN-2021 (Rel. 26.09, Created)
DT   01-JUN-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-299
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5135-5135 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 299 BP; 89 A; 42 C; 55 G; 113 T; 0 other;
     tgtagtattg tagtttgttg agtcatagaa tttatgttgc attccagttt accacatagt        60
     tcataatttg tagcatgccg ttttgtctgt ctttgagttt tgcagtcggc tagcagtcta       120
     gagaattgca cttgtacttt tgtctagaag tagagaactc ttgtcatgag ttgtgctgac       180
     taacttgtgg tgctaaataa ttgtcattaa ttaattaagt aataattaat aaactagtaa       240
     aaagataaac ctcggtcacg atctttttat ttgcaagtta tgcatcaaaa tacataaca        299
//
ID   Gypsy-58_SpEx-I repbase;    DNA;    INV; 4991 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4991
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4125-4125 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..973
FT                 /product="Gypsy-58_SpEx-I_1p"
FT                 /translation="MNTQYGQAAQQPTPAAMVPKTEESTSIISTLSVASKI
FT                 PEFWPENPRLWFYQVEAILTPQKTSDANKYFMIVAKLSKDVIQQVADIVAS
FT                 PPETNKFETLKNRLLQIYEESETRQIQKLISEIELGDQKPSQLLRRMKELA
FT                 RGKIEADTLKILWQGHLPAPVRAVLTVTSAKDLEELAVIADKVMETNQPAQ
FT                 INEVARSNQGTSTAFDVATIMAEIAKINLKIAEMDRGRRRYRNRSGYRNSS
FT                 QSRSRSRPRRTPESPDWLCSYHFKFRNRARRCVAPCNWKTKTASTSSEN"
FT   CDS           964..4053
FT                 /product="Gypsy-58_SpEx-I_2p"
FT                 /translation="LGKLRRLQPVAGSCAVKDHRLIVSDQKSHIRFLIDSG
FT                 ACISVIPKHLVKNKSELDYNCNFKLYAANGSEIKTYGSKTLTLDLKLRRPF
FT                 TWTFVVCNVKQPILGVDFLNHHKLIVDISGRCLLDKITNLAVRGTIVNHYI
FT                 SAISTLRSDHPIYNILTKYPEILKPISFKETPKHSVYHYIETTGSPIFCKP
FT                 RPLAPERYKIAKEEFRSMVEAGICRPSKSAWASPLHIVPKKDGQIRPCGDY
FT                 RALNAVTKPDRYPIPRVQDFTYFLAGKTVFSKIDIKKAYHNILINPDDICK
FT                 TAITTPFGLYEFERMTFGLRNAAQTFQRFMTNTVLSGLDFLYCYADDILVS
FT                 SVDNKLHSEHLEQVFQRLSEYGITINLEKCMFNATSIEFLGYEVSIAGIRP
FT                 LESKVQAIIEYPKPQNVSQLRKFLGMVNFYRNHLPRATEYLDILNKYIHKA
FT                 KKNDKTAIHWTPDAEQAFVQCKNSLTNAVTLTFPVVNVPYALFADASNNCV
FT                 GAVLQQYVDKQWHPLGYFSRKLTETQKNYSTYDRELLAIFLAVQHFRSLFE
FT                 GHDLIIYTDHKPLTFAFSKLSKNNNKESPKRIRQLLFISEFTTDIRHVSGQ
FT                 DNVVADALSRIDSINCTSSLIDYEELALEQSQDTELKTLLTDSKHKFKKFI
FT                 VPGSNKSIFCEVSGEIARPYITENFRKKAFYMVHNLSHPGSRTSRQMIKEK
FT                 FFWPNMNRDVGLWTKTCIPCQKSKVNRHIISNYGKYPTADRFDHIHIDLIG
FT                 PLPTTSDDYRYCLTVIDRGTSWPEAYPLKEISAETVAHKLYTEWICRFGCP
FT                 AKLTSDQGRQFESKVFTTLMSYLGVQKIRTTPYHPQSNGILERIHRCIKAS
FT                 LMARLNNNKNWIHELPCVMLGLRAAIKSETGVSAAQMVYGRTLRLPGEFFV
FT                 ETNNNLDPYTIVQNIRNNIRQYKPVEMKSNSSTSFFVHPDIRDCTHVFVRV
FT                 DKIKKSLTCPYEGPYKVLERSEKIYKIQLEDRILTVSIDRLKPAYLLKESE
FT                 PTQTNTDKKVSRSGRIIKTPVRFM"
XX
SQ   Sequence 4991 BP; 1878 A; 946 C; 902 G; 1265 T; 0 other;
     ctggtgaccc cgcgtccgat tcacaataac gtgggcgacg tccgatatcg cgcacgccgt        60
     gtctgtataa cgctcagcac tcaagtttta aggttcaaga aaaatgaaca cacaatacgg       120
     acaagcagca cagcagccaa ctccagcagc catggtacca aaaacagaag aatcaacctc       180
     cattatctca acattatcgg ttgcaagtaa gattccggaa ttttggcccg aaaaccctcg       240
     gttatggttc taccaagtag aagccatact aacaccacaa aaaacatcag acgccaacaa       300
     atacttcatg atcgtagcaa aactgagtaa agatgtaatc caacaagtag cggacatagt       360
     tgcaagtccc ccggaaacta acaaatttga aacactcaaa aatagacttt tgcaaattta       420
     tgaagaatct gaaacaaggc aaattcaaaa actgatttcg gaaatagaat taggagacca       480
     aaaacccagt caactgctgc gaagaatgaa ggagctggcc agaggaaaaa tagaagccga       540
     caccctaaag atactgtggc aaggacactt acctgcacct gtaagagcag tactcacggt       600
     aacatcagcg aaagatctgg aagaactggc cgtaatagca gacaaggtaa tggaaaccaa       660
     ccaacccgca caaatcaacg aggtagcccg cagcaaccag ggaacttcaa cagcatttga       720
     tgtagctaca attatggcag aaatagcgaa gataaacctg aagatagcag agatggacag       780
     aggaagaaga agatatagga ataggagcgg atacaggaac tcttcgcagt cacgttctcg       840
     gtcaaggccc cgaagaacgc cagagagtcc agactggtta tgctcgtacc acttcaagtt       900
     caggaacaga gcaagaagat gcgtcgcacc ctgcaactgg aagacgaaaa cggcatcaac       960
     tagctcggaa aactaagaag actacaacca gtggcgggaa gttgtgcagt caaggaccac      1020
     cgccttatcg taagtgacca aaaatctcac ataagatttc ttatagattc tggtgcatgt      1080
     atttctgtca taccaaaaca tttagttaag aacaaaagtg aattagatta taattgtaat      1140
     tttaaactct atgccgcaaa tgggtcggaa ataaaaacct atggttctaa aactttaaca      1200
     ttagacttaa aattgcgtag acctttcaca tggacattcg tagtatgcaa tgttaaacaa      1260
     ccgatactcg gtgtagattt tcttaaccat cataaattaa ttgttgatat tagtggacgc      1320
     tgtttgttag ataaaataac taatctggca gtcagaggaa cgatcgtaaa ccattatatt      1380
     tcagcaattt caaccttacg tagtgatcat cccatatata acatattaac taaatatcca      1440
     gagattctca aacctatttc atttaaagag acgccaaaac actcggttta tcattacatt      1500
     gaaacgacag gttctcctat attttgtaag cctagaccgt tagctccaga gcgatataaa      1560
     atagctaaag aagaatttag atcgatggta gaggcaggta tatgcagacc gtccaaatca      1620
     gcttgggcaa gtcccctgca cattgttccg aaaaaagacg gacaaatccg accatgcgga      1680
     gactaccgcg ctcttaatgc agtaacaaaa cccgacaggt accctatacc tcgcgtacaa      1740
     gacttcacat attttttagc aggaaaaaca gtgttctcaa aaatcgatat aaaaaaagcc      1800
     tatcacaata ttttaattaa tccggatgat atttgtaaaa ccgcaataac tacaccattc      1860
     ggtttatatg aatttgagcg tatgactttt gggttgagaa acgctgccca aaccttccaa      1920
     cgcttcatga caaacacagt cttatcaggc ttagattttt tatactgtta cgcggatgat      1980
     attctagtaa gttcggtaga taataagctt cattctgagc acctagaaca ggtatttcag      2040
     cggctaagcg agtatggtat cacgataaac ttagagaaat gtatgtttaa tgctactagc      2100
     atagaattcc taggctacga ggtatctata gctggtatca gaccattaga atcaaaggta      2160
     caggcaatca ttgaatatcc taaaccgcaa aacgtcagtc agctgcgtaa atttttgggt      2220
     atggtcaact tttatcgaaa tcatttacct agagcaacag aatacttaga catattaaac      2280
     aaatacattc acaaggctaa aaaaaacgat aagaccgcaa tacactggac accggatgct      2340
     gaacaagcgt ttgtgcaatg caaaaacagt ctcaccaatg cagtcacgtt aacattccca      2400
     gtagtcaacg tgccatatgc gctttttgcc gatgcatcaa ataactgcgt aggagccgtg      2460
     ttgcaacaat atgtagacaa acaatggcac ccattaggct atttttctag aaaattgacc      2520
     gaaactcaaa agaattatag cacctatgac agggaattgc tagctatatt tttagccgta      2580
     caacacttta gaagtttatt cgaaggccat gacctaataa tttacacaga ccacaaacca      2640
     ttgacattcg cgttttcaaa attaagtaaa aataacaata aagaaagccc aaaacgaatt      2700
     aggcaattac tattcataag cgagtttacc acagatattc gccatgtgag tgggcaagat      2760
     aatgttgtcg cagacgcctt atcacgcata gatagcataa attgcacatc aagtttaatc      2820
     gactacgaag aactagcctt agagcaaagt caagatactg aacttaaaac tttattaaca      2880
     gattctaaac acaaattcaa aaagttcatt gttcctggta gcaataaatc aatcttctgc      2940
     gaagtctcag gcgaaatagc aaggccatac ataacggaaa actttagaaa aaaagcattt      3000
     tatatggtac ataatcttag tcatcctggc tcacgcacgt cgcgccagat gattaaagaa      3060
     aaattttttt ggccaaatat gaatcgtgat gtaggattgt ggacaaagac atgtataccc      3120
     tgtcaaaaat ccaaagtaaa cagacatatt atttctaact atggcaaata tccaacagcc      3180
     gacagatttg accacatcca tattgatttg attggtcccc ttccaaccac ttcggatgat      3240
     tatagatatt gcttaacagt aatagacaga ggtactagct ggcccgaagc ttacccactc      3300
     aaagagatat cagcagaaac ggtagcacat aaattatata cagaatggat atgtaggttt      3360
     ggctgcccag caaaactcac tagtgaccag ggcaggcaat ttgaaagcaa agtattcaca      3420
     acattaatgt catatctagg ggtccaaaaa ataagaacga cgccctacca tcctcagagc      3480
     aatggaattt tggaaagaat tcatagatgt ataaaagctt cactaatggc acgattaaat      3540
     aataataaaa actggataca cgaactacct tgcgtaatgt taggacttcg tgcagccatt      3600
     aaatcagaaa caggtgtcag tgcagcacaa atggtctacg gccgcacctt acgattgcca      3660
     ggtgaatttt ttgtcgaaac aaacaataat ttagatccat acaccattgt tcagaatatt      3720
     agaaataaca taagacaata taagccagta gaaatgaaat caaacagttc cacatcattt      3780
     tttgttcatc ccgatatcag agattgtaca cacgtatttg taagagtaga taaaataaaa      3840
     aagtcactaa catgtccata tgaaggtcca tataaagttt tagaaagatc agaaaaaata      3900
     tataagatac aattagaaga tagaatatta acagtatcaa ttgatagatt aaaacctgct      3960
     tacttattga aagaaagcga gcctacacaa acgaatacgg ataaaaaagt gtcacgtagc      4020
     ggtagaatca tcaaaacccc tgtaagattc atgtaaaagt aaatacgtaa aattagttgc      4080
     atatatacaa cgtagaaaaa aataaaataa caggtgaaca taggtaatat acctagtata      4140
     tgaaatatgt tgactagact tattattagt acgtaggtaa taggtagcat cttttgctga      4200
     gccaacggaa aaccaaattc ttcatttaat tcatttaatt ctcataattg tacatcacta      4260
     gaacgtgtaa tccagtgcaa cgaacttgaa ttgcatacaa tattttgttt aatagaacat      4320
     taatacaaaa tgggtaaaac atatagtgtc gagaaaaaaa ccgaagaagt aattattgct      4380
     caaaacggag cgaataatgc atccaattcg cattttgagc agacaattga gaaatacggt      4440
     ctaataatat ttggcatcgc aataatcatt gccatctata tcacatacag gatgtttaaa      4500
     agatgtaagc aaggagctca gaaaatatta cggaaagaaa tgacagtttg gcatagcaac      4560
     ctgaacatcc caatggctca acaaatgacg caaccacaac atattgtata gtgtttagtg      4620
     aatgtgtaaa agtaacaata agaaaataca aaaagtgtaa tgtcaaaacg gatatctatt      4680
     ctaaattgta tcaaaaagtg tttagcaagt taagtgtacg ctacaaatta taacacaaat      4740
     ataagacaca tggtattaaa cttgtatata cttaagtact tatgattgta ataaaataaa      4800
     acacatactg taacaaagct agtaaaacga tacttagcaa cagtcgacat tataagtaaa      4860
     cattgttatg gtaagataag caagctagta tctaagtatg gaatgtaagc taaagttata      4920
     aatagaatga aaccacttgt attattaaaa ataatgtaac atttattttt tttaaaaaaa      4980
     ggggggaata t                                                           4991
//
ID   Gypsy-58_SpEx-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-110
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4187-4187 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 110 BP; 36 A; 24 C; 20 G; 30 T; 0 other;
     tgtggggatg cataggcata gactataaat agaaggattt aataaatata caacagttgg        60
     cattagaacc tcgcgcgtct catttctctc tctacacacg taaccctaca                  110
//
ID   Gypsy-58_TrVa-I repbase;    DNA;    INV; 5516 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5516
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 303-303 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           479..1693
FT                 /product="Gypsy-58_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MAAEFTLFVANVLKLNQERRKKEAASKLAQLDVLWST
FT                 LETDAKTSELFALYDKCKKFCNDSLIKSETETETGSMEFDIKTFGSLISEF
FT                 DGTPGQLNDFLEVVKYYYDSVKKEAQEKLITFVVKIKVKGAAKLALTKEPK
FT                 TFAELESLLKARFKPRTTISKLRNDLQGLKQNDCKVADFVAQIETLVAAMT
FT                 DLQVSSVGEESRDVVRTLNDSMALNVLKTGCKGKIRDVLQCSMVQDFSQAV
FT                 SLALEAESTCLSESPETQAQVNYVKGFKGQRRYFHGNKKRGRYQNGNRFNN
FT                 QNRNEDNRYNNRYQNDNRNRNRNYNQNRNQNGGRNQNGYGDRNRNGNHYGN
FT                 RNRNQGDGGRADSRCFDSGSSQGKGAHSGNGAGPSGTSNQGAKVAMAAAHQ
FT                 DQQEVFQGYFD"
FT   CDS           1558..5313
FT                 /product="Gypsy-58_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LWLFSRKRCSFGKRCGAVRYFEPRSESCYGGGPPRSA
FT                 RSISRIFRLKLNGNVNFVQIRTDFSLRPLTFLVDTGADVSLCKVNTVNFKK
FT                 RNVLPDILKLSGIGKDVQKTLGKLPMRLHCGKELSINQDFHLVGSDFPILT
FT                 DGILGLDFLNRFSCILDYGTWLMSFSLNEKIIELPIQKFKGSGITIPARSE
FT                 VMQAIRMELPEDSFIVSGELSPGVFVSNSILPSNGFKHVCIVNTLEVPITL
FT                 NTFPLQYDSLNNYNILKYEASGSEAERRLMLEKILRENAPNFSSKDVDSVI
FT                 EICKDWHDCFHLPGDKLTVNNFYEQNIMLNDHSPVYQKNYRIPQAQKEEIR
FT                 QHIDQYLEDDIIEPSTSPYNSPILLVPKAGAPGKTRLVVDFRALNKRIVAD
FT                 KFPLPRIDEILDQLGRATVFSSLDLQAGFHQISVNPKDRPLLAFSSDSGHF
FT                 QFKRLAFGISVAPNSFQRMINIALAGLEHRAFVFIDDIITFGATTLHHNKN
FT                 LIRVLERLRKCNLKLNPAKCKFLRRELLYLGHRITDRGVFPDSSKISAVLN
FT                 YPVPENAKALQRFVAFANYYRKFIPNFADICVCLNQLLRKNVPFIWNQERQ
FT                 SAFDTLKKRLASPPVLCYPDFTKPFILRTDSSNFAVGAVLAQATGVNGAER
FT                 VVAYASRTLNKHEVKQAIIIKELIAIHWAIKHFRPLLYGRTFTVYCDHRPL
FT                 VSLFSQKDPSSKMTRIRLDLEEFNFNIVYTAGRLNVVADALSRIVFDSEKL
FT                 KALIPKDSDVKIVTRSKAKERCENHVDNVNNAHQVDEGQNKEPDQLCVWTA
FT                 TSPTDVHRLKSLRFEFNNNLACGYEVRKETAGYVITLRVGGTSSLPQLRAA
FT                 LELLSRQKMKTKMKLSIVDDIFKFLTLDDFVAYVNRFCLNVQIVVYTPPKY
FT                 VDSERERKGILKSFHNDVYGHFGINKTLKRIKQRYEWKFMSKEISDFIRCC
FT                 DKCQLNKVITHNKEFRQVTDTPFTSFEEAQVDLIGPFPISEEGFRFAVTFQ
FT                 CDLTKFIDAVPIPDKTAKTVAKAIVENFFCRYGISKKVRTDMGTEFLNEVW
FT                 QEVCQLLKIERKTSTAFHHQSLGSVERAHRVWNEFLRVHADRKDSDWAKYL
FT                 PYFCLSFNSTPSISHNYTPFELVFGKLPKILKFPPQESKFVNVDNYAKDLK
FT                 FRLGHAQQKVHDILHKSKKQMTDKYNRTAKPCLLLPGMNVKLRIGNSHKLK
FT                 PMYXGPHLLVRKEGVNSIINLKGKHTLVHNDRLLPYNNPIPT"
XX
SQ   Sequence 5516 BP; 1781 A; 891 C; 1141 G; 1702 T; 1 other;
     tggcgaccgt gattttcgaa tttcgcactt cggatttgtg cttttagttt tccatcgatt        60
     tttctagtgc agtgtataaa atgggaaatt ggttcgcgaa aaacgaagaa aaaacggaaa       120
     atcgcgagaa aattatagtg cacgggaatg caaccattaa tggtcacgat caggcccaat       180
     attttctaat cggacttttg tttttgttgg tgttagtgaa tttttttgtg ttattatgga       240
     attatgtaaa agctcggaaa gctaaggtta actctgttaa agccaaatgc gagcaacaaa       300
     gtaaagagtt agtagaacta cgctctttgt tagtgcaaaa gtgatgcaaa gtttgcggac       360
     aatttatttt atttttaata caaagcaatt gcctatttat ctattttatt ctgtttttat       420
     gcatctatct tagtttattt gtattttaaa tatgtgtttt tatggcgtcc aaagataaat       480
     ggctgccgag tttacgctct ttgtggctaa tgtgctaaaa ttgaatcagg aacgacgaaa       540
     aaaggaggca gcaagtaaat tggcgcagtt ggatgtatta tggagtactt tggaaactga       600
     cgctaaaaca tccgaattat tcgcactgta tgataaatgt aaaaaattct gtaacgattc       660
     attaatcaaa tctgaaactg aaactgaaac tggaagtatg gagtttgata tcaaaacttt       720
     tggttcgtta atcagtgaat ttgatggcac gccaggccag ctgaatgatt ttttggaagt       780
     tgttaaatac tattatgatt cagtaaagaa agaggcgcaa gagaagctca tcacctttgt       840
     cgttaaaata aaagtcaaag gcgcggcaaa attagcactg accaaagaac caaaaacgtt       900
     tgcggaacta gaaagtttgt taaaagctcg gttcaagcct cgtacgacta tttcaaaact       960
     gcgaaatgat ttgcaaggtt taaagcaaaa tgattgtaaa gtagcggatt ttgtggcaca      1020
     aatagaaacg ttagttgccg ctatgactga tttgcaagtg tcgtcggtag gtgaagaaag      1080
     ccgggatgtc gtgcgcacac taaatgactc aatggccctc aacgtgttaa agacaggctg      1140
     caaaggaaaa atacgggatg tacttcagtg ttccatggtg caggattttt cacaagcagt      1200
     gtctttggca ctggaagctg aatctacttg tttgtcagaa tcaccggaaa ctcaggcgca      1260
     ggtgaactat gtaaaaggat tcaaaggaca gcgtcgttat tttcatggaa acaagaagcg      1320
     aggccgttat caaaatggaa atcgctttaa taatcagaat cggaacgagg acaatcgtta      1380
     caacaaccgt tatcagaatg acaatcggaa ccggaaccgt aactacaacc aaaatcgcaa      1440
     tcaaaatggt ggtcgtaacc agaacgggta tggtgatcgt aacagaaatg gaaatcacta      1500
     tggaaatcgg aaccggaacc aaggagacgg aggacgtgct gacagtagat gttttgactc      1560
     tggctcttct caaggaaaag gtgctcattc gggaaacggt gcggggccgt ccggtacttc      1620
     gaaccaagga gcgaaagttg ctatggcggc ggcccaccaa gatcagcaag aagtatttca      1680
     aggatatttc gattaaagtt gaatggtaat gtaaattttg tacaaataag aacagatttt      1740
     agtttaaggc ctttaacctt tttagttgat accggggcgg atgtaagtct atgtaaagta      1800
     aatactgtaa attttaaaaa acggaacgtg ttgccggata ttcttaaact gtcaggaata      1860
     ggaaaagatg ttcagaaaac cctgggtaaa ttgccgatga ggctacattg tggaaaggag      1920
     ttgtctatta accaagattt tcatttagtt gggtcagatt ttccaattct aacagatggg      1980
     attctcggtc ttgatttttt aaatcgtttc tcatgtattt tagattatgg tacatggtta      2040
     atgtcttttt ctctgaatga gaagattata gagttaccca ttcagaaatt taaaggttct      2100
     ggaatcacca ttcccgcaag atcggaggtc atgcaggcaa ttaggatgga gttgcctgag      2160
     gatagtttta ttgtttctgg cgaactttcg ccaggtgttt ttgtttcaaa ttcaattttg      2220
     ccctcaaatg gctttaaaca tgtgtgcatt gtaaatactt tagaagtccc gataacttta      2280
     aatacttttc ctttacagta tgattctctt aataattaca atattttaaa atatgaagca      2340
     tccggatcgg aagctgagcg taggttaatg cttgaaaaaa ttttaaggga aaacgcacca      2400
     aatttttcca gtaaagatgt agattcggtg atcgaaattt gcaaagactg gcatgattgt      2460
     tttcatttgc cgggggataa actgacagtc aataattttt atgaacaaaa cattatgcta      2520
     aatgatcact caccggtcta tcagaaaaat tatcgaattc ctcaagctca aaaggaggaa      2580
     attaggcaac acattgatca gtatttggag gatgatatta tagaaccttc gactagtcct      2640
     tataattctc ctatactcct ggttcctaag gcaggtgctc cgggtaagac tcgattagtt      2700
     gttgatttta gggctcttaa taagcgcata gtagcagata agtttccgtt accaagaatt      2760
     gatgaaattt tggaccaact tggtcgtgcc acggtgtttt ctagtctcga tttacaggca      2820
     ggatttcatc aaatttcggt aaatccaaaa gaccgtccct tattagcttt ttcttcagat      2880
     tcagggcatt ttcagttcaa aagactcgct tttggaatct cagttgctcc aaattctttt      2940
     caaagaatga taaatatcgc tcttgctggg ttagaacatc gtgctttcgt atttattgat      3000
     gacataataa cttttggcgc tacaacgctt caccataata agaatttaat aagagttttg      3060
     gaaaggctgc gtaaatgtaa tttaaaacta aatccagcta aatgtaaatt tttacgccgt      3120
     gaacttcttt accttggaca taggattact gacagagggg tttttccgga tagttcaaaa      3180
     attagtgctg tgttaaacta cccagtgcct gaaaatgcaa aagcgttgca aaggtttgta      3240
     gctttcgcaa attattatag aaaattcata cctaacttcg ccgatatttg tgtttgttta      3300
     aatcagcttt taaggaaaaa tgttcctttt atttggaatc aggaaaggca gagcgctttt      3360
     gatactctta aaaagcgtct cgcatctcca cctgttttgt gctatcccga tttcacaaaa      3420
     ccttttattt tgcgcacgga tagtagtaat tttgcggtag gtgcggtttt agcacaagct      3480
     actggcgtaa acggagccga aagagttgtt gcttatgcgt ccagaactct aaataagcat      3540
     gaagtgaaac aagcaataat aattaaggaa ttgatagcaa ttcattgggc tattaagcat      3600
     ttcagacctc tgctttatgg tagaactttt acggtttatt gcgaccatcg acctttagta      3660
     agcttatttt ctcagaaaga cccatcttct aaaatgacga gaataaggtt agaccttgaa      3720
     gagtttaatt tcaatattgt ttatactgct ggacgactca acgttgtcgc agatgcttta      3780
     tctaggattg tattcgattc ggaaaaatta aaagcgttga tacccaaaga ctctgacgta      3840
     aaaatagtca cgcgttccaa ggccaaagaa cgttgtgaaa accacgtaga taacgtaaat      3900
     aatgctcatc aggtggacga aggtcaaaac aaagagcctg atcaactctg tgtttggaca      3960
     gcaacttcgc caactgacgt gcatcgttta aaaagtttgc gttttgagtt taataacaat      4020
     cttgcatgtg ggtatgaggt tcgaaaagaa actgctggat atgtaataac gttacgagtc      4080
     ggcggcacaa gttcattgcc acaattacgt gcggcgctgg agttgctgag ccgacagaaa      4140
     atgaaaacaa aaatgaaact gtcgattgtt gatgatattt ttaaattttt aactctagat      4200
     gacttcgttg cttacgtaaa tcgattctgt ttgaatgtac agattgttgt ttatacacct      4260
     cctaagtatg tggatagtga gcgtgagcgg aaaggaattt tgaagtcttt tcacaatgat      4320
     gtttacggac attttggtat taacaaaaca ttaaaacgta ttaagcaacg atacgaatgg      4380
     aaatttatgt caaaagaaat ttccgatttt attcggtgtt gtgataaatg tcagttaaat      4440
     aaggtaatta cgcataataa ggaattcaga caggtgactg atactccatt cacgagtttc      4500
     gaagaggctc aggtagattt gattggccca tttcctattt ctgaggaagg ttttcgtttt      4560
     gctgtgactt ttcaatgtga tttaacgaag tttatagatg ctgtgccaat tccggataaa      4620
     acagccaaaa ccgttgctaa agccatagta gaaaattttt tttgtagata cggaatcagt      4680
     aagaaagtaa gaactgatat gggtacggag tttttaaatg aagtttggca ggaggtttgc      4740
     cagttattaa aaattgagcg taaaacgtcc actgctttcc atcatcaatc tcttgggtca      4800
     gtggagagag ctcacagggt ttggaatgag tttttaagag tccatgcaga taggaaagat      4860
     agcgattggg caaaatatct tccgtatttt tgtttatcat ttaactccac gccttctatt      4920
     tcgcataatt atacaccttt cgagttggtt ttcggtaaat taccaaaaat tttgaaattt      4980
     ccgccgcaag aatcaaaatt tgtaaatgtt gataactatg cgaaagattt aaaatttcgg      5040
     ttgggtcacg cacaacaaaa agttcatgat attcttcata aatcaaaaaa gcaaatgact      5100
     gataagtata acagaactgc aaaaccttgt cttttgttgc cgggaatgaa cgtcaaactg      5160
     cgaataggaa attcgcacaa attaaaacca atgtatwcag gtccacattt actggtacgg      5220
     aaagagggtg taaatagcat tataaattta aaaggtaaac atactcttgt acataatgat      5280
     aggttactac catacaataa tcccattcct acttaatcat atttcattaa tcctttcttt      5340
     cacgcgtgaa aattgtaaaa atagtgtcaa atgttttaat ataggtttac ttactcattg      5400
     ctaaaattat gttgataaat tatttaataa ttaatgtaaa aaaaaaaaaa aaaaaaaaaa      5460
     aaaaaaaaaa aaaaaacttt agtttctaag tttttttttc tcccaaaagg ggatga          5516
//
ID   Gypsy-58_TrVa-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-58_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-165
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 362-362 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 165 BP; 60 A; 27 C; 30 G; 48 T; 0 other;
     tgtagtataa gaacgtagtg atgtagtgtt tgtaaacaaa tgtaaacaaa tccggtcgat        60
     actcgcgagt cgacaactgt atataagaag ctatgaagta ataaaccaca gagtaatgtt       120
     aaagcactcg ttgatattat ttctcatatc gatcccacta ttaca                       165
//
ID   Gypsy-590_AA-I repbase;    DNA;    INV; 6716 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-590_AA_;
KW   Gypsy-590_AA-LTR; Ty3_gypsy_Ele50; Gypsy-590_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6716
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2626-3087] - Reverse transcriptase
CC   Positions [4378-4848] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           491..1687
FT                 /product="Gypsy-590_AA-I_2p"
FT                 /translation="MPKEHKVRNSLKQTHHLLSKIRNSACVSSDSDSSEST
FT                 DSGDLAHIPIKNIPSLEILSLNDNNNMEEVNAKLQTMMQMMEALAKQQTEH
FT                 ATYFSQIQTQTNQTQENVIAHQPISNIDQLFKIPDPIKMIPIFDGNRKQLS
FT                 SWLETAEETLNVLKPHVSAQQFRMYFTAVSNKVQGKAKDILCLAGNPDKFE
FT                 DLKEILTNALGDRHELSTYKSQLWHCKMTEDMSIHIYYKKSKEIIQNIKTL
FT                 AKQKDTYKNHWDAINEFIEEDALAAFISGLSEPYFGYAQAARPKDIEDAYA
FT                 FLCKFKSKQVVARNLNQDQKFNKNKIFENKSQGSSNFNQNKKPFIKTEHKD
FT                 TTEPMDTKTTRSRLTINNHVTEEEETQSHLNSETESDEEVDLDLNFHLVNP
FT                 TQKTT"
FT   CDS           1915..5133
FT                 /product="Gypsy-590_AA-I_1p"
FT                 /translation="MKFHYFFDGILGSESLAKLKAQINYENETITLRDKQF
FT                 SYSKFYPAKKLYNHFITIDTMNNGDWLVPTYQKLHKKVFIQPGLYKAHNNK
FT                 STIHVISATKNIENLPKLQLTVNNFETILPEKIDSQHISKNDIESIIRTNH
FT                 LSKLEKQELLCTLFKHQEVIQKKGEKLSCTSATKHKIITTNDSPIYTKNYR
FT                 YPHHFKGDIQQQIEEMLDNGIIRPSKSPYSSPIWVVPKKLDASGKRKVRVV
FT                 IDYRKLNELTIDDRYPMPQIEDILDSLGKSSYFTTIDLKSGFHQIPMDPAH
FT                 IEKTAFSTDKGHFEFTRMPFGLKNAPATFQRAMNNILGDYIGTKCYVYLDD
FT                 IIIIGYNLKDHLENLSLILKRLSDFNLKIQLDKCEFLKRETEFLGHIISNE
FT                 GVKPNPEKIDKILKWPLPKTQKEIKQFLGLVGYYRRFIKDFSKITRPMTKY
FT                 LKKDSSININDSSYHTAFDTLKGIIATDQVLVYPQFDKPFIVTTDASGYAL
FT                 GAVLSQIQDNIERPIAFASRTLNDAETRYATNEKEALAIIWAVNKFRPYLY
FT                 GTKFTLVTDHKPLTFIKSSEKNQKILRWRLDLEDYDYEVKYREGKSNVVAD
FT                 ALSRMPVEVNINETNNDEIPYFSGSEDLEDDADSIANNSPESHDSLDSQTV
FT                 HSADDSANNYIHFTERPLNYFKNQIIFRISRIDTIIQETLFQNYHRTIVSQ
FT                 KTYTKENITHLLKTFHNGRQTALMAPENLIQTVQESFKENFNQKGHFVFTN
FT                 NMVEDVQNEERQNQIIINEHNRAHRGITEVEAKIKRSYFFPNIYSKIRTFI
FT                 NSCEICNTHKYERRPFNIKISPRPITEKPLDRVHMDIFIMDKCSFLSLIDS
FT                 FSKHLQLIVLKSKNLVHVQKALGKYFSSFGVPREIVTDHETTFQSIQLRNF
FT                 LSQLGAQIHYAASSESNGQIERTHSTIIEIFNTNKHKFRGMGTKSIVKLSV
FT                 ALYNNSVHSSTKYTPNEILFNQNNIVNPEEIIRDAQELFLKAKLNMGKAQK
FT                 QMISQNSNKEDPPIINDGQEVYVIPNIRTKTQPRANKTNANEVTDRTFKNN
FT                 RHIKRHKNKIKRPKKM"
FT   CDS           5169..6716
FT                 /product="Gypsy-590_AA-I_3p"
FT                 /translation="MLHYFITFTLILTNISCQDLTIRNLHNDLIMMQKNSL
FT                 CRIQTGNIRVVHPINLTDIEITINQLTNLVYRKQNNNALFEISKYKIRELY
FT                 SNFMQIKPISHKRSKRWDIIGTAWKWIAGSPDAQDLRIIDRSLNELVNENN
FT                 HQVKINHQIGKRISELTTTINELIEKQQINQIILDELDVITTILNIDTLNK
FT                 ILTSVQEAILFSKMHVTNSRMLSGKEIHLIKDILRNQGVQLDIPEEALNFV
FT                 TPKMATSENTLLYILHVPELETEESTIMRIHPLSQNDSIIKTYPQFLIKQA
FT                 KQLFTTAKPDDYVQRHSFIKEFKDLCIYPLIMGTEPQCLMEINAETTTKLI
FT                 TNNKILISNAKNQELRSNCGPSDRYLSGNFIVSFSNCTIEFMDQNFTSTEK
FT                 ISESESIQGALHNLQINSEILQNHDVAKIEKATLLNRRKLEKVSLQHETDQ
FT                 IWKWSLLGGTALMSTLLFFTLYLIFIHLRFTHKRTSRKTHQRKPETKSPGH
FT                 GNQELSIEDDTSSPPGGVTT"
XX
SQ   Sequence 6716 BP; 2595 A; 1407 C; 1050 G; 1664 T; 0 other;
     ggattggcgc agccgtgcag tgctcgaaaa acaatttcgc gaaaaacagt gtagtgactc        60
     tggtctacca gccagaatcg aagtgaaccc gcgaaagcat tcgctaacat cgagggtgca       120
     gcggagttga ggttccaccg cgtgaagttg gacgtcgaga gaacccacgc acaacgattg       180
     caaggtgagt gttttttttc tttatcctct attccacacc gaaatacgag tgaaagtgaa       240
     aacatcgcct aggttggcgt tttatttttc cgtgagtttg aagcccgttc taagagaaag       300
     gctcgaactc attaagaaat taaaatttgc taaacccctg gagtgagaag agttctaaga       360
     gagcttcccc tccaaccgaa attgtgaagt tctaagagaa ttacatttcg ggagtcatac       420
     gagttccgag agatcgtacg gctcaaaaca aacaaaacta tagcttgctt ttatcttcta       480
     agtgcatgtc atgccaaagg agcataaagt aagaaacagt ctgaagcaaa ctcaccactt       540
     gttatctaaa attagaaaca gcgcgtgcgt gtcttcagat tcagacagct ctgagtctac       600
     cgattcggga gacttagcac atattccaat aaagaacatc ccttcactag aaatcctttc       660
     tctaaacgac aacaacaata tggaagaagt caatgccaaa ctgcaaacga tgatgcagat       720
     gatggaggca ctggcaaaac aacaaacaga acatgccacg tatttcagtc aaattcaaac       780
     gcaaacaaat caaactcaag aaaacgttat cgcacatcaa cctataagta acatcgacca       840
     gctattcaaa attccagacc cgatcaaaat gatccccata tttgacggca atagaaaaca       900
     attaagttca tggctggaaa cagcagaaga aacccttaat gtattaaaac cacatgtatc       960
     agctcagcag tttagaatgt actttactgc ggtatctaat aaagtccaag gcaaagcaaa      1020
     agacattctt tgcttagccg gaaatccgga caaatttgaa gatttaaaag aaatattgac      1080
     gaacgcgttg ggagatagac acgaattgtc aacatacaag agccaattat ggcattgtaa      1140
     aatgaccgaa gatatgtcta tccatattta ctacaaaaaa tccaaagaaa taattcaaaa      1200
     tattaagact ctagcaaaac aaaaagatac atacaaaaat cattgggacg ccattaacga      1260
     gttcattgaa gaggatgcgc tagcagcctt tatatctgga ctctcagaac cgtactttgg      1320
     ttatgcacaa gctgcacgac caaaggatat tgaggatgca tacgcattct tatgcaaatt      1380
     caaatctaaa caagttgtag ctcgaaacct gaatcaagac caaaaattca acaaaaacaa      1440
     aatatttgaa aataaatccc aaggatcatc aaatttcaat caaaataaga aaccttttat      1500
     aaaaaccgaa cataaagata caactgaacc aatggacaca aaaactactc ggagtcggtt      1560
     aaccataaat aatcatgtaa cggaagaaga ggaaactcaa tcacatttaa attcagaaac      1620
     tgaatctgat gaagaagtag atctagatct aaattttcac ttggtcaacc ccacacaaaa      1680
     aacaacctaa attacctccc atatttgaaa ctgaatcatc ctaaaacaaa aaagcagtta      1740
     aaaatattaa tcgatactgg ggcaaacaaa aatattattt caccaaacat aatagaatcc      1800
     gttaaaaccg taccgaatac acaaatcagt aatgtttgcg gagtcaacaa cgtcacttcg      1860
     aaaggagaac tcgatctttt cggaaatacg tttaaacctt tgcaatttta cgtaatgaaa      1920
     tttcattatt tctttgatgg aattctgggg tcagaatccc ttgcaaaact taaagcacaa      1980
     atcaactatg agaatgaaac cattacgtta agggataaac aattttcata ctcaaaattc      2040
     taccctgcaa aaaaacttta caatcatttc ataactatcg atacaatgaa caacggagac      2100
     tggttggtac ccacatacca aaaacttcat aaaaaagttt tcattcaacc aggactatat      2160
     aaagcacata ataataaatc gaccatccat gttatttctg caaccaaaaa catagaaaat      2220
     cttccaaaac ttcaactgac agtaaacaat tttgaaacaa ttctcccaga aaagattgac      2280
     tctcaacata tttccaaaaa tgatatagag tctataatta gaacaaatca tctttcgaaa      2340
     ctagagaaac aagaactgct ttgcactctc ttcaaacacc aagaagtgat ccaaaagaaa      2400
     ggagaaaaac tttcatgtac gtcagctaca aaacataaaa ttataacaac aaacgattct      2460
     cccatttata caaaaaacta tcgctaccca caccacttta aaggcgatat ccaacagcaa      2520
     attgaagaaa tgctagacaa tggcatcatt aggccttcga aaagcccata ctcttcaccg      2580
     atatgggtag taccgaaaaa acttgacgcg tcaggcaaaa gaaaggtacg cgtcgtaata      2640
     gattatagga agctgaacga gctcactatt gacgacagat accctatgcc tcaaatagag      2700
     gatattctgg atagcctcgg aaagtcatcg tacttcacaa cgatcgactt aaagtctggt      2760
     ttccatcaaa tcccgatgga tcctgcccac atagaaaaaa cagctttttc aacggacaaa      2820
     ggacattttg aattcacgag aatgcccttt ggcctaaaga atgctcctgc tacattccag      2880
     agagcaatga acaatatcct aggagattat atcggcacca aatgttatgt ctatcttgat      2940
     gacataatta ttatcggata taatctaaaa gaccatttag aaaatcttag ccttatcctg      3000
     aaacgcttat cggatttcaa cttaaaaatc caactcgata agtgtgaatt tctcaagcga      3060
     gagaccgaat ttctagggca tataatttca aatgaaggtg tcaaacctaa ccccgaaaaa      3120
     atagataaaa ttctgaagtg gcctctacca aaaacgcaga aagagattaa acagtttctg      3180
     ggtttagtag gttattacag aagatttatt aaggattttt caaaaataac tagacctatg      3240
     accaaatatc tcaagaaaga ttcatcaatc aatataaatg attcatcgta tcacacagca      3300
     tttgatacgc tcaaagggat aattgccaca gatcaagttt tagtctatcc ccagtttgat      3360
     aagcctttca tcgtaacaac agatgcttca ggatatgcat taggtgcagt tctatctcag      3420
     atacaagaca atatagaacg cccaatcgcc tttgcatcca gaacactaaa cgatgcagaa      3480
     accagatacg ctaccaacga aaaggaagcg ctggcaatca tatgggccgt gaataaattc      3540
     agaccatatc tttacgggac taaatttact ttagtaactg accataaacc tctgactttt      3600
     attaaaagtt cagagaaaaa tcaaaaaatt ttgcgatggc gcctagatct ggaagattat      3660
     gactacgaag tcaagtacag agaaggcaaa tcaaatgtag tagcagatgc actaagcaga      3720
     atgcctgttg aagtaaatat taatgaaacc aataatgatg aaattcctta tttttcaggt      3780
     tccgaagatc ttgaagatga tgcagattcc attgccaata actcccctga atcccatgat      3840
     tcccttgatt cccaaactgt tcactcagct gatgattcag ctaataacta tattcatttc      3900
     acggaacgcc ctttaaatta tttcaaaaat cagataatat tccgtatttc ccgtatagat      3960
     actattatcc aagaaaccct tttccagaac taccatagaa caatagtatc tcagaaaacc      4020
     tacacaaaag aaaatatcac acatcttttg aaaaccttcc acaatggtag acaaacagcc      4080
     cttatggcac cagaaaatct tatccagacg gtacaggagt cctttaaaga aaacttcaat      4140
     caaaaaggtc atttcgtttt tactaacaat atggtcgaag acgtgcaaaa tgaagaaaga      4200
     cagaatcaaa taataataaa tgaacacaat agagctcacc gaggtataac tgaagtcgaa      4260
     gccaaaatta aaagatcata ttttttccca aatatttact caaaaatcag aacctttata      4320
     aactcatgtg aaatatgcaa tactcacaaa tatgaacgca gaccatttaa cataaaaatt      4380
     tcacccaggc caataacaga aaaaccatta gatagagtcc acatggacat attcatcatg      4440
     gataaatgca gcttcttatc tctaatagat tcattctcta aacatttaca gttaatagtt      4500
     ttgaaatcga aaaatcttgt acatgtgcag aaagcactag gaaaatattt cagctccttt      4560
     ggagtaccca gagaaattgt caccgaccat gaaaccactt ttcaatcaat tcaactaaga      4620
     aatttcctta gccagctagg ggcacaaatt cattacgccg cttcgtcaga atcgaatgga      4680
     caaatagagc gtacacattc tactataata gaaattttta ataccaacaa gcacaaattc      4740
     agaggaatgg gtacaaaatc aattgtaaaa ttatccgttg cattatataa caactctgta      4800
     cactcttcaa ctaaatatac tccaaatgaa atattgttca accagaataa tattgttaac      4860
     ccggaagaaa ttataagaga cgcccaagag ctattcctta aagcaaaatt gaacatgggt      4920
     aaagcacaaa aacaaatgat ttctcaaaat tctaataagg aagaccctcc aattataaat      4980
     gatgggcaag aagtttatgt tattccaaat attcgcacaa agactcaacc cagagccaat      5040
     aaaacaaatg caaatgaagt cacagacaga acattcaaaa acaaccgtca cattaaaaga      5100
     cataaaaaca aaatcaaaag accgaaaaaa atgtaacacc atttactttt ataacttttt      5160
     gcttccagat gcttcactac tttatcacat tcaccctcat tctcacaaac atctcatgtc      5220
     aagacctaac tatcaggaat cttcataatg atttgataat gatgcaaaaa aacagcctat      5280
     gtagaattca gacaggaaat atccgagttg tacacccgat caacctaaca gacatagaaa      5340
     ttactatcaa tcaactcaca aatttggtgt atcgtaaaca aaataataac gctttatttg      5400
     aaattagtaa atacaagata cgagaattgt actctaattt tatgcaaatc aaaccaatat      5460
     cgcacaaacg gtccaaaaga tgggacatca tcggcacagc gtggaagtgg atagcgggca      5520
     gcccagatgc tcaagaccta cggataatcg acagaagcct caatgaactt gtcaacgaaa      5580
     ataatcatca agtaaaaatt aatcaccaaa tcggcaaaag aatttcggaa cttacaacca      5640
     ccatcaacga actaatcgaa aaacaacaaa tcaatcaaat cattctcgat gaacttgacg      5700
     tcatcaccac catactgaac atagatacac tcaacaaaat tctaacaagc gttcaagaag      5760
     cgatactctt ttctaaaatg cacgtcacaa acagcagaat gttatctggc aaagaaattc      5820
     atctgatcaa ggatatactc agaaatcaag gagtccagct agacatcccg gaagaagcac      5880
     tcaattttgt tacaccaaaa atggcaacta gcgaaaatac tttactctac atattacatg      5940
     ttccagaatt ggagacagaa gaatcgacaa tcatgcgaat ccacccattg agtcaaaatg      6000
     attcgattat taagacttac cctcaattcc ttatcaaaca agcaaaacaa ctcttcacca      6060
     ctgcaaaacc agacgactac gtccaaagac acagttttat caaagaattc aaggatctgt      6120
     gtatttatcc actcatcatg ggaactgagc cacaatgtct catggaaatc aacgcagaaa      6180
     ctacaaccaa actaataacc aataacaaaa ttcttatctc aaatgcaaaa aaccaagaat      6240
     tacgctcaaa ttgcggtcct agcgacagat acttatctgg aaattttata gtatcgttct      6300
     caaattgtac aatcgaattt atggaccaaa atttcacatc taccgaaaaa ataagtgaaa      6360
     gcgagtctat tcaaggagca ttacacaatc tgcagataaa cagcgagatt ttgcaaaatc      6420
     atgacgttgc aaaaatagaa aaagccaccc ttctgaacag acgcaaactg gaaaaagtat      6480
     ctcttcaaca cgaaaccgac cagatttgga aatggagtct attaggagga accgctctga      6540
     tgtcgactct actattcttc accctttacc ttatcttcat tcatttaagg tttacccaca      6600
     aaaggacatc gaggaaaacc caccaaagga agcctgaaac caaatcacca ggacatggta      6660
     accaggagct gagtatcgag gacgacactt cttcaccccc cggaggagtc acgaca          6716
//
ID   Gypsy-590_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-590_AA_;
KW   Ty3_gypsy_Ele50; Gypsy-590_AA-I; Gypsy-590_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-273
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 273 BP; 76 A; 72 C; 55 G; 70 T; 0 other;
     tgaaccagcc accacaggtg caacgtcaca tgcaccgtca tcacctttgg atcggaccac        60
     tgccacgtgc tatgcaacgt caacaccttt atgcccaaca gccggaattg ctaggtcagc       120
     agttcaattc tacaaaacca ccggactgac cgtgaccggt gttcagttta tttttatccg       180
     tgtttcattg cgtttcggct taagtaataa agtgatttag tgaggaaaat cagttaagtg       240
     ttttttaaaa agcccgaacc gccagcaaac cca                                    273
//
ID   Gypsy-591_AA-I repbase;    DNA;    INV; 7343 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-591_AA_;
KW   Gypsy-591_AA-LTR; Ty3_gypsy_Ele115; Gypsy-591_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7343
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2821-3324] - Reverse transcriptase
CC   Positions [4393-4869] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1252
FT                 /product="Gypsy-591_AA-I_2p"
FT                 /translation="MDPASLSEEEICYELALRHVNNLGALPRRARAVRLRA
FT                 LMQEDEIRGMIYDNSSHVMDAGDNISQCQTRVRELLPEVEAAMKRGDLPAV
FT                 RLLRSRLIHYRNRLDIIDPPEVFVDTHATLSLLVQFSLEDVDDALGRTKKS
FT                 ARTVNSESVNQSSTGAVPKRPNQTSISAEADLRGFDAEGNPSFRSSSSNHA
FT                 IIEQAGQPQRQSTSPAIEALENRSQRMNSTQHDNERGAESLEALSINRGRG
FT                 RGALRPRVATSNRFTMEKDFGRHEPRISSIPPPPYEPPRVEAGEADAREDY
FT                 YQLRADLLRQLNQRPQEYFPRPLLEERRTLKAIHNWPFRYKGEKDGSSLNT
FT                 FLQRVEIFAASEGVPEDVLLKNV"
FT   CDS           2770..5241
FT                 /product="Gypsy-591_AA-I_1p"
FT                 /translation="MSKYVLDEVNKEIDRMLELDVIEEALYSPWNNPLVAV
FT                 KKKTGQYRVCLDARHLNSVMVNEGYPIPQISAIMNNLSGCNYISAIDLKDA
FT                 FWQLPLEEKSRPVTAFTVPQRGHFQFKVVPFGLCTASQALARLMTHLFADL
FT                 EPHVFHYLDDIIICSRSIDEHIDMLEKVAKRLRDAGLTISAEKSKFCLEEM
FT                 KYLGYVLNQSGWNVDQEKIDCIVRFPAPQCRKEVQRFLGMCNWYRRFIADF
FT                 SKIAVPLTELTKTKTKFRWTKDAEDAFLKLKSALVSAPVLAMPDHTKPFAI
FT                 ACDASDVAIGAVLTQETDGEEHPIAYFSQKLSSSERKYSVTERECLAVIRA
FT                 IEKFRGYVEGTKFTVHCDHSALSYLRSMKNPTALMSRWILRLNAFDFDIKY
FT                 RKGEINIVPDALSRIVSTLVFSADAAVDQWYQKLMERVQEAGDKFPDFRVV
FT                 NQELYKNCSSKNEEGALTHKWKKVVPLNQRAGVIAKFHDSASGAHLGFQKT
FT                 WQKLQNHFYWPKMIDDVARHVRACETCKASKAPNRTMMPNMGGPKPARVPW
FT                 ELVSVDFVGPFTRSRAGNTVMLVVVDWVTKYVVVHPMRSADSVKMVDFLEQ
FT                 HVFLRYSRPRIILSDNGKQFLSAAFKALISKHNIIHMKTAFYCPMVNNAER
FT                 VNRVLITCIRALLDEDHRGWDENLQAIVAAINGAKHEATGVSPHVANFGRE
FT                 LILHTDLYTQQELNTPDDPKVAQEVRLSAIRRIHEFIIQRIKNNHEKTKQR
FT                 YNMRTRDIVFKVGDLVWRRTFTQSSKVDHINRKLDSKFIPATVIKVLGSNL
FT                 YMLEDVRDGKRGQYHAKDIKPD"
XX
SQ   Sequence 7343 BP; 2109 A; 1787 C; 1900 G; 1533 T; 14 other;
     ttggcgccca acaaaacgaa ccattttagt ttgtggttta tagttttaga atttgtgttg        60
     aatttgtggc acaattctgt tatttagtaa cacatttgta gaacctacca cttattagtt       120
     cttgtctagt tggctaatta agaccatttg gatcatggat ccagcaagcc tgtctgaaga       180
     agagatctgt tacgaactgg cgttgcgcca cgttaacaat ctcggagcac ttcctcgcag       240
     ggcaagagcc gttcgcttgc gtgctctgat gcaggaagat gagattagag gcatgattta       300
     tgacaattcc tcccatgtta tggatgcggg ggacaacatc agtcaatgtc aaactcgtgt       360
     gcgcgaatta ctaccagaag tggaagcagc aatgaaacgc ggggatctgc cggccgtgcg       420
     tctgctacga tcgcgattaa ttcactatcg gaataggttg gatatcatcg atccgccgga       480
     ggttttcgtc gacacgcacg ctacattatc actactagtg cagttttcgt tagaggatgt       540
     ggacgatgcg ctgggaagaa cgaagaaaag tgccagaaca gtgaacagtg aaagtgtgaa       600
     ccaaagcagc accggagcag ttccaaaaag gcccaaccag acttctatat ccgccgaagc       660
     agatcttcga gggttcgacg cagagggaaa cccgtctttt cggtcaagtt catcgaacca       720
     tgcaatcatc gaacaagctg gacagccgca acgacagtct acatctccag cgattgaagc       780
     gttggagaat cgstcgcagc ggatgaactc aactcaacac gacaacgaam ggggagcaga       840
     atccttggaa gccttgtcta tcaaccgagg aagaggtcgg ggagcgttaa ggccgcgggt       900
     ggcaaccagc aacagattca ccatggagaa agatttcggc cggcatgaac cgaggatwag       960
     cagcatacca cctccgccgt acgaaccgcc tagagtagaa gcaggtgaag ctgacgccag      1020
     agaagattac taccaactcc gagccgatct gctacgacag ctgaaccaga gaccgcaaga      1080
     atacttccca aggccgttgt tggaagaaag aagaacactg aaggcaatcc acaattggcc      1140
     gttcaggtat aaaggcgaga aagacggttc gtcgctgaat acgtttctcc aacgcgtaga      1200
     aatattcgca gcatctgagg gagttcctga ggacgtattg ttgaagaacg ttwagcacct      1260
     gctaatggac gacgcgctcg actggtacag caacgtttac gtgactggcg agttggtatc      1320
     ctgggatgat ttcaagcgcc taatcaggca cgaattcctt ccagcgagct acgcctatat      1380
     cctgagagca gaggcctacc atcgtctgca gggggaggac gagccgttca gcaagttcta      1440
     ccaggacatt accacactat tccagtacgt agaccctccg atgaccgatc cagagaagct      1500
     gttcatcatc aaaaagaata tgaactccac ctacgctccc atcgcagcat cgcaccattc      1560
     cacacgcttg ctggtaaagg cgtgcaagga actagatgaa cttcgaaaac tgcaacaaca      1620
     ccaacgaaga atctcgttac catatggagc acttatcgag ccakcactag ctacaccgma      1680
     ctcttcattg cgttcgtcaa agcttcagca gccgcttcaa agatttggaa aggtccatgc      1740
     gttggaatct gagaagttgc aaagctatgg agacaatcat tacattccgg aaaccgagca      1800
     gtcaacgcaa gaggaagaga aggtggacca gcgaatggaa gccwtactcc agcaagtaaa      1860
     cgcgctcaag ctaaggttcg atcgacgaga agcaggagga mgacagtcgt ccaatcaatt      1920
     tccccaacaa ccagtggcca atcccagcaa ccaacaagcc gcggatgcat ccaatgcacg      1980
     ggcacctcca gcggtgatga tgtgctggaa ctgtgatgaa gaggggcacc gcttcatgga      2040
     ctgtgccaaa ccacaggcgg tgctgttctg ctatcgctgt ggtcagaagg gattctcgct      2100
     gcgaagttgc ccgacatgtc gtcaacgctc gggaaacgcg caagcgggga accagtaacc      2160
     gagggtatgg aatcctcgct tcaccataac gatccctcag taatacccga cttagtccaa      2220
     atcagttcac tgattatcaa tcccgacaat gacaatcgtc cgcatgcagt ggtggaagta      2280
     ttaggaaagc aagtcaccgg cctcctcgac agcggwgcca actgctccat tttaggaggc      2340
     gacaacgtga agatggcaca agaactgggc ttgcagaaga tagcgctagt tggaggcata      2400
     agaacagcag atggcacgga gcatcgcatc caatcataca ctcgcttgcc catagcctac      2460
     aacaacaaga gtgaagtcgt gacgatgttg ctactcccca cgctgccgac atgtgtgatc      2520
     ttcggaatga acttctggaa cgcattcagc atcaaaccgg tctgctgcac gataagcctg      2580
     gagcctggca tggaaggcaa tmctcagcaa gtgtcgatga agtcgctgtc cgaagaagaa      2640
     aagcggagac tggaagaagc cataagccac ttcccaaaag cagaacccgg maaattggga      2700
     agaackgacc kwtacgtcca tcgcattgac gtcggagaag cgaagcctcg gaagcaacgg      2760
     tactatccca tgtcgaagta cgttctagac gaagtgaata aagagatcga ccggatgctg      2820
     gagctcgacg tgatagagga agcgctgtat tcaccatgga ataatccgct ggttgcagta      2880
     aagaagaaga ccggccagta cagagtctgc ctggatgccc gccacctaaa ctcggtgatg      2940
     gtgaacgagg ggtatcccat cccacaaata tcggctatta tgaataacct cagcgggtgc      3000
     aactacatat cagcgatcga tctgaaggat gcattctggc aactgccttt agaagagaaa      3060
     tctcgtccgg tgacagcgtt cacggtacca caaagagggc actttcaatt taaagtggta      3120
     ccattcgggt tatgcacagc gagtcaggcc ttggcgcggc tgatgaccca tcttttcgca      3180
     gatctggaac ctcatgtgtt ccactacctc gatgatatca tcatctgttc aagatcgatc      3240
     gacgaacaca ttgacatgct tgaaaaggtg gccaagcggc tgagggatgc cggtctgacc      3300
     atatccgcag aaaaatccaa gttttgcttg gaggaaatga aatatctagg ctatgtgcta      3360
     aatcagagcg gatggaatgt agatcaggag aagatcgact gcatcgtgcg tttcccagct      3420
     cctcaatgcc gaaaagaggt gcaacgattc ctggggatgt gcaattggta tcgcaggttc      3480
     atagcggact tctccaaaat agcagtaccg ctgacggagc tgaccaaaac gaaaacgaaa      3540
     ttccggtgga caaaggatgc agaagatgcg ttcctgaaat taaagtcagc actcgtatca      3600
     gcgcctgttc tagcaatgcc agatcacacc aagccgtttg cgattgcctg cgatgcgagc      3660
     gacgtagcca ttggggcggt gttaacgcaa gaaacagacg gagaagagca cccgattgct      3720
     tatttctctc agaagctgtc gtcgtcggag cggaaatact cggtaaccga acgagaatgc      3780
     ctagccgtga taagagcaat agagaaattc cgagggtacg tagagggtac aaaatttacc      3840
     gttcactgcg accactcagc attgagctat ttgagatcga tgaaaaaccc tacagcgctt      3900
     atgagccggt ggatactgcg actaaacgca ttcgatttcg atataaagta ccgaaagggc      3960
     gaaatcaaca tagttccgga cgcgctttcc agaattgtta gcacgctggt gttttccgcc      4020
     gacgccgccg tcgatcaatg gtatcagaag ctgatggaaa gagtgcagga agccggggac      4080
     aaatttccgg atttccgtgt ggtgaaccaa gagctttaca agaactgcag cagcaaaaat      4140
     gaagaaggag ccttgacaca caagtggaag aaggtcgtgc cgctcaacca gcgagctgga      4200
     gtgattgcga agttccatga ttcagcctca ggagctcacc ttggcttcca gaaaacatgg      4260
     cagaagctgc agaaccactt ctattggccg aaaatgattg atgacgtagc acggcacgtt      4320
     agggcgtgcg aaacatgcaa agcaagcaag gcgccgaaca gaacaatgat gccgaacatg      4380
     ggtggcccta aacctgctcg cgtgccatgg gagttggttt cggtagactt cgtaggccca      4440
     ttcacccgtt ctcgcgccgg aaacacagtt atgcttgtcg tggtagactg ggtgaccaag      4500
     tacgtcgtcg ttcatcccat gcgttcagca gattcggtga aaatggtaga cttcctagaa      4560
     cagcacgtct tcttgcggta ctctcgacct cgtatcatcc tctcggacaa tggaaaacaa      4620
     ttcctatcag cagcattcaa ggctttaatc tccaagcata acatcatcca catgaagact      4680
     gcgttctact gtccgatggt gaacaatgcg gaaagggtga acagagtcct gatcacttgc      4740
     atacgagccc tgttagacga agaccaccgt ggatgggacg aaaacctaca agccatcgta      4800
     gcagctatca acggagcaaa acatgaggcc accggtgtca gtccgcacgt tgcaaacttc      4860
     ggtagagagc taatactgca cactgacctc tatactcagc aggagttgaa cacgcccgat      4920
     gatccgaagg tagcgcaaga agtacgtctc tctgcgatcc gccgtatcca cgaattcatt      4980
     atccagcgca tcaagaacaa ccacgaaaag acaaagcagc ggtacaatat gagaacaagg      5040
     gacatcgtat tcaaggtcgg agatctcgta tggcgaagaa cgttcacgca gtcatccaag      5100
     gtagatcaca ttaatcgcaa actcgactcc aagttcattc cggctacagt gattaaggtc      5160
     ttggggagca acttgtacat gctggaagac gtcagggatg gcaagcgagg acagtaccat      5220
     gccaaggaca taaaaccgga ctagtgaagc cttttcatca agctatgtaa gcagcaatag      5280
     ctgccaacca cagattatcc acggagaatc agcaaaacac gcaaagcggt catgatttct      5340
     gtgtgcagaa cgattagcag acaacgccta tgggtagcag aaggaacgca gtgaagaatc      5400
     accttaacgc gctccggaat cacggaggac ctagacggcg ctgctccgca taagtttcat      5460
     ctctctgcac cagaatcaaa gccatcgttc agcggcattt tcagccgaag aagttcgaag      5520
     ctgagctgaa tccagcattg tccgtcaggt gtgatgagca acaacattct tttagactac      5580
     ctctccacct tgaccagagt ccagctatga aagcaaacgt ttttgcagac aactgccttc      5640
     gccgagaagg aaacaacaca cgcattgcgg tcatagaaca gaagtcccca gcggtttaag      5700
     gagataattc agcggtacac caacactttc atcgcgccag aaagtgtacc gcgcgccgtt      5760
     cgcgagtcgg gagaaatcgc accttgcatt tctggaaacg ggaagcaggg atctctgcag      5820
     tacaccagct ggcttctgga taggaggagt ggagagccgg agatcgacga ttgagttcgg      5880
     ttcgacgcgg attcgaagct tacggccact atcaggcgca gcggaatcgc acctggactg      5940
     tactgagaga ggaggagtac gtagcggagc ctacgacagg cttgggagat tggaaccccg      6000
     aaagcaacca agttagtagg gaggctccaa ataccagaaa cagtaatgac gcaacagaag      6060
     gaaaagccca cctaaggccc gggagattgg gaccctgaaa actagtcagt tagtagggag      6120
     gctccgaata ccagaagcag cgacaacacg gtagaagcac aaagcctacg gaaggcccgg      6180
     gagattggga ccctgaaagc cagcttgcaa gtaaggaggc tccaaatacc aagaaaagga      6240
     gagataacca ggacgcaacg ccacagaagt tcagagccta tggaaggctc gggggattgg      6300
     aaccctgaaa gtcagaggat gaccccaaat accagcaaca gtgtcggtgc aaagaaagtc      6360
     ggagggcaca gccggcgagg gagattggga ctccaaagaa ctagtaaggt ggctccaaat      6420
     gccggacaag ctatgcagac agcgagcaag gagttgttga cgacgagcat acgcttcatc      6480
     aaaacacgtt ctgcggcaga aactagagga cccagatcac gaaccgaaac ctcgccgttc      6540
     cttgcatacc agtggaccag cacaccagta tcatctgtcg atcacggtct gaacctcaaa      6600
     tactacgagc catcaagcaa ccatcagtgg agcccattgc agtcgaccac aagtcgtcgg      6660
     acctgaagcg cgcacacgtc gccgatcaac cgatcggaca catcgcagtc ggaggagtaa      6720
     atccaaccga gtgtcattga ctgatttcca ggcacaggtc ttgaacgaag tggtagtcgg      6780
     ttgcatgggg gtcactacga aatcttcctc taaagtaacg cgaccggggg gcgcggtaaa      6840
     gcctcctaac tgggctcgta gtgatttagg tcgaggaaat gcgacctttt ctcaatcgta      6900
     actgacaata tccactatca tcgttttcat attagccaac attaaatgta catttcgtta      6960
     catgttttga tctctagttt tattgtagct cttaaaacta gcgtagatcg tactgagtgt      7020
     ttgccacagg aacggcatag cacagaagat gggacaagaa ctagcgcaga gacatttgct      7080
     cattagtgag cgttcagatc acctttggca ggattcgctg tctttacgtt tgtttcgatt      7140
     atgtttgagc ttttggatct ggtgagcatt aaggctcgcg tatgttagtt ttgctgtagt      7200
     tatcaacatc ttaaggtctg cttaagtgat gactttcaga tctgctccag tctctctgcg      7260
     acttcttgta gaagtgagtc tgagagtttt ttgtgagctg cctgtcagcg ctcacaaaaa      7320
     actctgcgcc tgtggtaagg ttg                                              7343
//
ID   Gypsy-591_AA-LTR repbase;    DNA;    INV; 1336 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-591_AA_;
KW   Ty3_gypsy_Ele115; Gypsy-591_AA-I; Gypsy-591_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1336
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1336 BP; 374 A; 336 C; 346 G; 256 T; 24 other;
     tgttacgtta ggtaataatt agtccggtta tgaggtaaat ttgaggtgta tgcaaacttt        60
     attccagtcg tgtagagtgt aaacccacct gaatgwaaac aaactatcac actactgaag       120
     ggcgcttgct tgaaatagaa agctcaaaag aaaatagctt gtaaaacaaa gtgacagatc       180
     cccacttccg ctacgagact gctcaccctc gcacactcgc gcataccagt tggaaaagcc       240
     tcakaagtga ctagaccgtg cggtagcaaa gtcgcccgck gcggccgtcg aamcggcatc       300
     gawcttggww gcgctgtgca gagtggcacg cacgcttttg gctggcgaga aamcctcagc       360
     waattacatc ccgcgacacg aggcacgctg acacccctca aggacgtaac agctacmgtc       420
     agcaaagaag agwtcaccaa tcggaacccc ctgcmgsgaa aacgakcgcc gcaggagaat       480
     tcggcttgcc aattggaatc cgaagccatc gcaccagcgg gtggtaacaa sccgggcwtc       540
     gacagagccc gaaacgwcac ctcaagggcg atcaggcagc kcaggaagcg awacgagaca       600
     tcaaacwgat ccgaccgcat tgaaagggca ccgwtttccw tcggacatca tcaaccacca       660
     ckggaggaaa aaaggaagag ccttcaaaag aagtgagtga ascactaatg gacgaatgac       720
     gctgatccta actgaggaaa cgcctcaggg ctcttttctt tttattttgt gcagttttcg       780
     atcaccccgc aaaagtcccg atcaggcggc ggctcaattc gtcgatcagg tgctgactgc       840
     ctgactagca aacaaccgca atcatccctg gggatcagcg acgagcgccg gcagcagcat       900
     atttgcatcc atcaccggga agaaaggcca gtttgcgttt agccgtgagg agtgaaccaa       960
     ttcgccagct cgcggacgag aagaccgtcg agggtgcagt tatgcaccgt ggaaggctgc      1020
     tctggtcccc gccaagcaag cagagcacgg aacgggcacg ttcaccaggc cgctccggcc      1080
     cctgagaagc atgcacggaa aaggagagac acgtcggaag cagtgtgcgt gagtagccta      1140
     agcggtttta cctaaatgta gataagaaga agtgccatga tttggaagat atctaagaat      1200
     cctcagtagg gtagctttaa ggagcaggaa tgtaaaataa atgtttgcat acagattttg      1260
     gttttgaggc gtttctgatg ttgctagccg gtccgatcaa agcccctttt attccggcag      1320
     agatcgtttc acaaca                                                      1336
//
ID   Gypsy-592_AA-I repbase;    DNA;    INV; 6314 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-592_AA_;
KW   Gypsy-592_AA-LTR; Ty3_gypsy_Ele160; Gypsy-592_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6314
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3261-3776] - Reverse transcriptase
CC   Positions [5187-5663] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(997..2232,2235..6008)
FT                 /product="Gypsy-592_AA-I_1p"
FT                 /translation="MDLQEVRSDLELRIAELNSILTNFSKAPRRNYSQKFL
FT                 HAKENRAKIIYNDVNTILAYNEALFHETELTFYTRGVRQKYNEIILLVNSK
FT                 LPFAKADAVDFKTAANVLLFLAKLRTKVNLRRVLPPIMAAPTVDIKLGTSL
FT                 VPVYNGTPEHLESFVDAVNLFSDTVVNTFAGATADQQAAAQVTVTRFVKTR
FT                 LTGVARQVIAEANDLQGILNAVKQHCEPKTTSDNIIAKLKAVKQKDSAESF
FT                 CNEVEKLTAQLKATYVREQIPLDRASIMATKKGVDALIDGTKSSDTKIILK
FT                 AGTFSKISDAVQKLMENDKPTPTTHNAQIFTLRGTNSQYRGRNINHGRGNF
FT                 YNTRGNHNNSHRYRGNYHHQRGNFHNRGNFNRNDQQTRGSYLHRGSYPQRG
FT                 HFNAHHGMFLAQHIPQHPATATKSPANTANFPGIPSNPPKQSKCTSKFFRC
FT                 PPGAVYAINLAQTNFVLLNIEGSEQQCSFIVDCGSDISVLKISKIKSQQYY
FT                 NPNDNCTISGIGNGTVTSYGSIITKLQINEESLQHKIHLVDNTFPIPTDGI
FT                 LGRDFFTAYRCCIDYNTWMLTIKTHHNITSIPIFNEAKTKHIIPPRCEIIK
FT                 KINLPDLSEDMVTISNEIAPGLVYANCIINNDNKFLKFINTTNDNLIIPEN
FT                 FFPNMTPLRNYCYHNKISPHTTNNLRNEQLLRELQLKNIDPKIKPELERLC
FT                 MEYNDIFTLQDDSLTTNNFYEQEILLNDNSPVYIKNYRTPEAQKTEIEVQV
FT                 QNMLDQNIIQPSISSYNSPILLVPKKTASDDKKWRLVIDFRQLNKKIVPDK
FT                 FPLPRIDEILDQLGRARYFSTLDLMSGFHQIPLHQHCRKFTAFTAGNGHFE
FT                 FTRLPFGLNISPNSFQRMMTLALSGLPPECAFLYVDDIIVIGCSLSHHLNN
FT                 LSNVFARMRSCNLKLNPKKCCFFRSEVTFLGHHVSQEGVQPDKTKYSIIKQ
FT                 YPVPKNADETRRFVAFCNYYRRFIPNFAEISHPLNHLTKKDTKFEWNEQCQ
FT                 KAFLTLKHQLLSPRILKFPNFKKDFIITTDASKVACGAVLAQEYDDIELPV
FT                 AFASRTFTKGEANKSTIERELAAIHWAIKYFRPYVYGRKFVIKTDHRPLVY
FT                 LFTMKDPSSKLTQMRLDLEEYDFVVQYIKGKSNVISDALSRVDLDVQELKS
FT                 MYILTRSMTRNKPTPVIVQSASPEPDQFRVYDAITGRDTFDLPKLNFVVNQ
FT                 NTNKVNLVLFNKNYKKSLALEQDLELLNLLPTLQKAFGKIDKGIPTINNTN
FT                 INVRTNKKTKTRNAIKFSSKKPNHFALATNDQIFQYIDVNTFKELGNKILR
FT                 NVTIMLYDRPKIISKSNDIENILHQYHNTPLGGHPGINRLYRKLRPIFYWS
FT                 NMKQTITNYVKKCELCKINKHFTHVQTPAIITTTPIKPFEVVSVDTVGPFP
FT                 LSINGNRYAVSMQCDFTKFVILVPVSDKTAATMAKAVVEHCILIYGPMTKI
FT                 KTDQGTEFKAVFDEMCKTLQITHACSAAYHPQTIGALERNHRCLNEYLRNF
FT                 CNDRSNDWDNWLAYYSFAYNTTPNLDHNYTPFELVFGKKLNSFEIVQNKIN
FT                 PVYNYDSYEKEMKFRLQIAHTQVLDAIRKIKMKRTHKLNENVRNTDIKIGD
FT                 IVYLEQENRTKLDQVSSGPYKVITTTVSNATITNDQNKCIEVHKSRLLKFK
FT                 N"
XX
SQ   Sequence 6314 BP; 2322 A; 1232 C; 1054 G; 1704 T; 2 other;
     tggcgaccgg actgtgaatc aaagtgaaaa ttgtactaaa atatttgaac acatcatgtt        60
     agtgaaagtt ctgttcctga taacaacgat tattctttgg tgctttgctt atacgttgtg       120
     gaaaatgcta acagtatatt accagtgaaa atcaaaaatg ggcaaaagca gttcaaaacc       180
     aaaaataacc acgagtggaa ctaacgtgga aataaacact attctggaac aacaccaaga       240
     actacacgag aaccatgaat tcaagctatg gctaatcctt gtcctagttg caatacaagt       300
     gatagttcta tgttataaag aactcaagtt acaaagccgc agaaatgctt taaaggcagc       360
     gaaaagtgtg gccaatatcg aaaacgtgta aagtgcaaga agaacataat caacgactta       420
     tgcaatctgt aacgtccgta agcagcagga gtgcagtgac ttcaaaagtg tattatgcca       480
     atcaatgacc atgtattaca tacatcaacg gctgactatg aagtaatgca atccgtaacg       540
     tcagcagcag gagcgcagtg acttcaaaag tgtattaaac ccagggctaa acggcaactt       600
     ggagtggccc ggtcgatggc taatcggcaa catggagcgg ccaagggagg atagcgacaa       660
     cgggaggtat caacatttca acacccgaca cccstaaatg aatgacgtgt tcttcgatgt       720
     taccgattaa caggtgagcc agtgatcgtc ctcaattccc gctatcgcta aacaattgaa       780
     aaagtgaaac ttacaaatga cctgcaacat gctaatttaa gttcctttta atggtaatga       840
     agaaaaaaaa ccccaaggtc gtgctttgtg ctagatgtga atcattaata ttgagttaat       900
     tttaggtaac tttaaaaatt ttgagtaaat tcccaaacca atggatctag ttcaaacggt       960
     gtaaatgtat attgattatc gaattcaatc ccatttatgg atttacaaga agtaaggagt      1020
     gatttggaac taagaatagc agaattgaac tcaattttaa ccaatttttc aaaagcacct      1080
     agaagaaatt actcacaaaa gtttttacat gcaaaagaga atagagccaa aattatatat      1140
     aatgacgtga ataccatttt ggcttacaac gaagcattat ttcatgaaac cgaattgaca      1200
     ttctacacta gaggggtgag gcaaaaatat aatgaaataa ttcttcttgt taatagcaaa      1260
     ctaccttttg ctaaagccga tgcagtggat ttcaaaactg ctgcaaacgt gctattattt      1320
     ttggctaaat tacgaacaaa agtgaatttg agaagagtct taccaccaat catggcagcc      1380
     ccgactgttg atattaaact tggcactagc ttagtaccag tgtataacgg tacacctgaa      1440
     catctggaat catttgtcga cgcagtgaac ctttttagtg atactgtcgt aaatacattc      1500
     gccggggcta ctgccgatca gcaggcagca gctcaggtta ccgtaacaag attcgtcaag      1560
     actcgactaa cgggcgttgc ccgtcaagtc attgctgaag ccaacgactt acaaggcatt      1620
     ttaaacgcag taaaacaaca ctgtgaacca aaaacaactt ccgataatat cattgccaag      1680
     ctcaaagccg tgaaacagaa agattctgcg gaatcgttct gcaatgaagt ggaaaaactg      1740
     acggcacaac ttaaagctac ctacgtcagg gaacaaatcc ctttagatag agcaagtatt      1800
     atggcaacaa aaaaaggcgt cgatgctcta attgatggaa ccaaaagcag cgacactaaa      1860
     attattttga aagctggtac cttttcaaag atttctgatg cggtacaaaa gctaatggaa      1920
     aatgacaaac caactcccac gacacacaac gctcaaatct ttactctaag aggtacaaat      1980
     tcacaatatc gcggtagaaa tattaatcac ggtcgaggaa atttttacaa cactagagga      2040
     aaccacaata attcgcatag atatcgtgga aattatcatc atcagcgagg aaattttcac      2100
     aacagaggaa attttaatag aaatgaccaa caaacaagag ggtcgtacct ccatcgtgga      2160
     tcatatccac agagaggaca ttttaatgcg catcacggaa tgtttttagc tcaacacatt      2220
     ccacaacacc cawtgccaca gcaacaaaat ctcccgcaaa tacagcaaac ttcccaggta      2280
     tccccagcaa tccaccaaag caatcaaaat gcacctcaaa attttttagg tgtcccccag      2340
     gggcagttta tgcgataaac cttgcccaaa ctaattttgt acttttaaat attgaaggtt      2400
     ccgagcaaca atgtagcttc atagttgatt gtggctcaga catttccgtt ctgaaaatca      2460
     gtaaaattaa atcccaacaa tactataatc caaatgacaa ctgcacaatt tctggaatag      2520
     gtaatggtac tgtaacctcc tatggaagta tcattactaa attacaaatt aacgaagagt      2580
     ctttgcaaca taaaattcat ttagtggaca acactttccc aatccccacg gatggaattt      2640
     tgggaagaga cttttttaca gcatacaggt gttgtataga ttacaacact tggatgctta      2700
     caattaaaac tcaccacaat attacttcaa ttccaatttt taacgaagca aaaacaaaac      2760
     atattattcc cccaagatgt gaaataatta aaaaaattaa tttgcctgat ctctcagaag      2820
     atatggttac catatccaac gaaatagcac ccggattagt gtatgcaaat tgcataatta      2880
     ataacgacaa caaattctta aaatttatca acactacgaa tgataatttg attattcccg      2940
     aaaacttctt tccgaatatg acaccattgc gaaattattg ctaccacaat aagatttctc      3000
     cacacacaac gaacaatcta agaaacgaac aattgctacg cgagttacaa ctaaaaaata      3060
     ttgacccaaa aataaaacca gagcttgaac gtctatgtat ggaatacaat gacatattca      3120
     cattacaaga cgatagcctc actacaaata atttttacga acaggaaatt ttgctgaatg      3180
     acaattctcc tgtttatatt aaaaattaca gaaccccgga agcacaaaaa actgaaatcg      3240
     aagtacaagt tcaaaacatg ttagatcaaa atattattca accttcaatt tcttcataca      3300
     attccccaat attacttgtt ccaaagaaaa cggcttccga tgataaaaaa tggagattag      3360
     ttattgattt tcgacaacta aataagaaaa tcgtaccaga taaatttccg ttacctagga      3420
     ttgatgaaat attagaccaa ttaggcagag caagatactt ttctactctt gacctaatgt      3480
     ctggatttca tcaaattcct ttacaccagc attgtagaaa attcacagca tttacagcag      3540
     ggaatggtca tttcgagttt actaggcttc cgtttggact aaacattagt ccgaacagtt      3600
     ttcagcgcat gatgacgctg gcgcttagtg gcctaccacc cgaatgcgca ttcctttatg      3660
     tagatgacat aattgttatt ggatgttcgt tgagtcatca ccttaataat ctttccaacg      3720
     tttttgctcg gatgagaagt tgcaatttaa aattaaatcc gaaaaaatgt tgttttttca      3780
     gatcagaggt cacatttctt ggccatcacg tttcacagga aggagtacaa cctgataaaa      3840
     ctaagtactc aattataaaa caatacccag taccgaaaaa tgctgacgaa acacgtagat      3900
     ttgttgcatt ctgcaactac tacagacgtt tcatacctaa ttttgccgaa atttcacacc      3960
     cactgaacca ccttaccaaa aaggatacaa aattcgagtg gaatgaacaa tgccagaaag      4020
     catttcttac attaaaacac caattattat caccaagaat tttaaaattc ccaaatttta      4080
     agaaagactt cattatcacg actgacgcct caaaagtggc ttgtggagca gttctagctc      4140
     aagagtatga cgatatcgaa ttacctgtgg cattcgccag ccgaacgttc acgaaaggtg      4200
     aagcgaataa gtcaactata gagcgtgaac tagccgctat ccactgggcg attaaatatt      4260
     ttcgaccata tgtatatggc agaaaatttg taattaaaac cgaccatcga ccgcttgttt      4320
     atttatttac catgaaagac ccttcatcca agctaacaca aatgcgattg gacttggaag      4380
     aatatgactt cgtagtacaa tatataaaag gcaaaagcaa tgttatttca gatgcactct      4440
     ccagagtaga tctagatgta caagaactta aaagtatgta tatattaacc aggtcaatga      4500
     ctagaaataa accaacacct gtaatcgttc aatcggcttc accggaacct gatcaattcc      4560
     gagtgtatga tgccattaca ggtcgtgaca cttttgactt acctaagctt aacttcgttg      4620
     ttaaccagaa tacaaataag gttaatttag ttttattcaa taaaaactac aaaaagagtc      4680
     ttgctttaga gcaagatctc gaattgttaa atttattacc cacgctacag aaagcattcg      4740
     gaaaaattga taaagggatc cctacaatta ataatacaaa tataaatgtg cgcacaaata      4800
     agaaaacaaa aacaagaaat gctattaaat ttagctcgaa aaagcctaat cattttgcat      4860
     tggctacaaa tgaccaaatt ttccaatata ttgatgtcaa tacatttaag gaattaggta      4920
     acaaaattct taggaatgtt accataatgt tgtacgatag accaaaaata atttcaaaat      4980
     cgaatgatat tgaaaatatt cttcaccagt atcataacac tcctctcgga ggacatccag      5040
     gaataaaccg tttgtacaga aaattacgac caattttcta ttggtcaaat atgaaacaaa      5100
     ctattacaaa ttacgtaaaa aaatgcgaac tttgtaaaat taacaagcat tttactcacg      5160
     tacaaacccc agccataatc acgacaacgc ccattaaacc attcgaagta gtatcagttg      5220
     atactgtagg accgtttccg ctttcaatta atggaaatcg atatgcagta tcaatgcaat      5280
     gcgacttcac aaaatttgtc atattagtac cggtctcgga caaaacagca gccactatgg      5340
     caaaagccgt agttgaacat tgcatattaa tatatggacc aatgacaaaa attaaaactg      5400
     atcaaggtac agaattcaaa gctgtttttg atgagatgtg caagactctg caaataactc      5460
     acgcttgttc cgccgcctac catccacaaa cgattggtgc gttagagaga aatcataggt      5520
     gtttgaatga atacctacga aatttctgta acgatcgatc taatgattgg gataattggc      5580
     ttgcatacta ctcttttgcg tataacacaa ctcctaacct tgaccacaat tacacaccgt      5640
     tcgaactagt atttggtaag aaactaaact cttttgaaat agtacaaaac aaaataaacc      5700
     cagtatacaa ttatgattcc tacgaaaaag aaatgaaatt cagattacaa attgctcata      5760
     cccaagttct agatgccata cgaaaaataa aaatgaagag aacccataaa ttaaatgaaa      5820
     atgttagaaa cacggatatc aaaattggcg atattgttta tttggagcaa gaaaatagaa      5880
     ctaaactcga tcaagtcagt tcaggacctt ataaagtcat tactacaaca gtatcgaatg      5940
     ctacaattac aaatgaccaa aacaaatgta tagaagttca taaatcacga ctacttaaat      6000
     ttaaaaacta aattttctaa aggggaaaga gtatctgatg atcttttaaa atgtagtatt      6060
     tacattccaa tctcaagatt aacttttcca tagatcaata acacaacaaa ttatatcgca      6120
     accgaaaaac agcatgtgat atacaaagaa aaattaacga aaaaacaact tattttgtga      6180
     gaggtacttg gagtcatatg gcatgcttta tatgttctac gaacattttc ctttaggggg      6240
     atggtgtggc atctgtattc cacatgtcat ccaatcccgc atagcaacca tagtttctag      6300
     aaggaccaca ccag                                                        6314
//
ID   Gypsy-592_AA-LTR repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-592_AA_;
KW   Ty3_gypsy_Ele160; Gypsy-592_AA-I; Gypsy-592_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-415
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 415 BP; 126 A; 108 C; 66 G; 115 T; 0 other;
     tggtacctac cgcgaaagtc aaaacgttcc catagcatcg aactgcttag gcgacacatg        60
     caatgtacgc ataagcagga cgatgaccac caaccgtttc gacaaatctg acatgacaat       120
     aatgtgtcat actcatattt caatttctca aagcacagtc ggtaagttat caccaagtgc       180
     cttcagcctt gaaactgcct tctccacatg tgcattcatt ctctctcttt ctttctcgat       240
     accgatcgtt atcgatcgct cacacgaata catgcatatg atatccagct acctccagta       300
     ggacctaatg ttaaacgaaa ctttgaataa acgattcatt ctattatcaa cctcagtcaa       360
     gtagagttga ggatcatttc acttcgaaaa accattatca aggctgatcg cctca            415
//
ID   Gypsy-593_AA-I repbase;    DNA;    INV; 6069 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-593_AA_;
KW   Gypsy-593_AA-LTR; Ty3_gypsy_Ele155; Gypsy-593_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6069
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4890-5396] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           950..2236
FT                 /product="Gypsy-593_AA-I_1p"
FT                 /translation="MDKFFSVEDAIFKLRQSLKKYNTFKVETRDKKVHTLI
FT                 ALKEDLKAIVKSSSIDYVTRQHLFARYKRLRAVIYDCLNLLKSPLEESILG
FT                 NLFTLELEQESLDNNNCKDSTEGSETEFEEEFENMATKLDLSLGLKVIQPF
FT                 DGTVAKLTSYIEGVELFQDYSEGVPEDKIIKFLKTTLVGSAHGAIDGSVTV
FT                 ADALQALKNKFAIRVTPRAVQNEMSALKQSQKSISDFGSEMEKLSAKLAAA
FT                 HVSMGTFAHEAAAVNIVEPIAVQSFIDGLKDPSTKFFLKARNPTTLNKAIS
FT                 DALECQATPSTDNMNENMMALRCTSNQRPYYYARGRRGYGGNRGYQNTRGR
FT                 SYGRGRGNYSNYNNPRNDNMNSQPQSHNYGRGHRGNRPPRANHNGNDHRAH
FT                 TANIAEQAPEQPRQRQPVNQEQNQAEEANLIDFFR"
FT   CDS           2565..5741
FT                 /product="Gypsy-593_AA-I_2p"
FT                 /translation="MKMEFTIPSGEIHFTIPPRYEYITYIETEFAETCVVL
FT                 NQKVQPNVFVANSIANPVNGKIPVRLVNISNKPVVIKDLKPRIALAENYNV
FT                 IELKKDDQKYDKIRASKLLEELKLNHLSGSDEKAIKQICLKYSDIFCLKGD
FT                 KLGTTNVYCPSLTVKPNIQPAFSKPYRLPFSQKEEVCKQVENMLKDGIIEE
FT                 TKSEWNSPLLLVPKKSDNDSKKWRLVIDYRKVNTNLQDDKFPLPNIEEVID
FT                 SLAGSQYFTHLDLSQGYYQCELKPEDRPITAFATPSGQYQMTRLPMGLKTS
FT                 PSSFSRLMTVAMSGLNLTKCLIYLDDIIVFGKTFDEHNKNLISVFQRLREV
FT                 NLKLNPAKCNFLKQELIYLGHFISKEGVLPDPQKIETIKNWKSPSSSDEVK
FT                 RFVAFANYYRKHIRNFASLCLPLNYLTRKGIEFNWSEECETAFQQLKERFI
FT                 KPPVLDYPDFSEKNTFKLHTDASGYGIGAVLSNKNDKPIAYASKGLNSAEK
FT                 NYSTIEKELLAIVWAIQHFRVYLYGRKFELYTDHRPLVYLFTLTDPSSRLT
FT                 KFRLALEEFNFDVFYKKGCENAVADALSRISTTELRDMQEKLSNEAFVTTR
FT                 MQSKKENTNSTKEVINGHDASSGKIVQLKVKTNNFSDNVTWIPEREEIIIK
FT                 PTDTLVSLRRTMEELGSICKKYGVGELYIQIDDDCAHKFYENIMQNDLAKR
FT                 VPSILKISNKVKIINDDTTKKLILNDYHILPTAGHAGIKRTINTIRQKYYW
FT                 KGINQDVAKFIKSCEKCQKYKSINVAKPPMIVTTTAESAFQKIYLDLVGPL
FT                 LPSDGYEYILTTQCELTKFITATPIKNKTTEAVAEAFMKSIILKYGVPDRI
FT                 ASDRGAEFMSELFTKVAQLLNIEKLNSTAYYHQSIGALENTHKSLGNFLRV
FT                 QCDNKLFSWANWVPYYEFAYNNTVHSATKYTPFFLVFGRPSKMPSNLVDSR
FT                 PEPLYNFEDYCKRIKATLQISHSEVRDRLIQEKTKRIVGINTKSKETTYRK
FT                 GDSVLIKNETGKKLDPRYDGPYHVVEDMGTNVKISNNNKEDIVHKSRIKLF
FT                 IE"
XX
SQ   Sequence 6069 BP; 2211 A; 1038 C; 1235 G; 1585 T; 0 other;
     tggcgatcct ttgccagtga ctacaccaaa cgaatcgatc agtgcaagtt aattatgtga        60
     ttaaccccgc aactacacca acgaatcaat aagtgcaagt taattaattg atatagtgat       120
     cggaaaagtg cagcaaaatg ggttggtttt cggcggacga aatcgtcgcc ccagccgcag       180
     tgactacaac agaaagtcat cacacagcac agaccgtagc gctatgtctt atggctggag       240
     tagccgtggg atatctactc gtaaaaagtc tgatgaagtg tcaccggcag caaacggagc       300
     gtgttgcgga gcgcaccgca cggttggcaa atttgcctgc ctaatgattc acattcacat       360
     tcggcgcgaa gaaaattagt gccgaaaagt gaacgaaaag actatgaact aagtcgttaa       420
     attggaaaag tgcacagaga agcaaatgct agtgaccacg gtatacaaat taacaagtga       480
     tcaacgaatt ttaagaacaa tcatacatga tgggagatcg aagaacacta aatgaagaaa       540
     agctgagaca gtgctaccaa tttttcgagc gagaatcgat gcattgggaa cgcctcgcta       600
     ggaaaagatt gttaatcacc atagaggaat ttgaatccaa gaaggccatc gttgaagcag       660
     ttcatcgcgt ggcagcagta gcagccatcg aatgtggacc agtggacgta caaaaccttc       720
     agtggaacta cggtgaatta tccatggcga tggaggcata tcgacaaatg gatttataag       780
     ggaagtagct aatgaatgaa ccacgtatag gataagatac tgatagaaaa ttacaatttt       840
     aggtaaaaag tacgaatggg tacatgtatt catggacgaa catggacgaa caaatggcac       900
     agtggtgagt gaaaagtaga tgtaaagcaa aaaaaaaaaa aaaaatggaa tggataaatt       960
     tttcagcgtc gaagatgcta ttttcaaact gcgtcaaagc ttgaaaaaat ataatacatt      1020
     taaagtagag acacgagaca aaaaggtgca tacattgata gctcttaaag aagatttaaa      1080
     agcaatagta aagagcagct caattgacta tgtaactagg caacatttgt ttgccaggta      1140
     taaaaggcta agagcagtta tttacgattg tctaaatctt ttaaagtcac ctttggaaga      1200
     atcgatactg ggaaatttat tcactctaga gttagaacag gaatcattag ataacaataa      1260
     ttgtaaagat tctacagaag gctcagaaac agagtttgaa gaagagtttg aaaacatggc      1320
     cacgaaactt gatctcagtt taggcctgaa ggtaattcag ccgttcgatg gaacagtagc      1380
     taagctaact agttacatcg aaggagttga gctcttccag gactactctg aaggggtgcc      1440
     agaagacaaa ataataaaat ttctaaagac tacgctagta ggttctgcgc acggtgcgat      1500
     cgatggatct gtaaccgttg cggatgccct acaggctttg aaaaacaaat tcgcgatcag      1560
     agtaacacca agagcggttc agaacgaaat gagcgctcta aaacaaagcc aaaagtcaat      1620
     atctgacttt ggttctgaaa tggagaaatt gtcggccaaa ctggcagcag ctcatgtttc      1680
     tatgggcaca tttgcgcatg aagccgccgc tgtaaatatt gtagaaccta ttgcggttca      1740
     atcatttatt gatggattga aagatccgtc aactaaattt tttctaaagg cccgaaaccc      1800
     aacaactttg aacaaggcaa tctctgatgc cttagagtgc caggcaacgc ccagcacaga      1860
     caatatgaat gaaaacatga tggcattacg gtgtacatca aaccaacgcc cgtactacta      1920
     tgcgagaggt cgcagaggtt acggtggaaa ccgtgggtat caaaatactc gtggtagaag      1980
     ctatggccga ggtagaggca attactcaaa ttacaacaac cctaggaatg acaatatgaa      2040
     ttcacaaccc cagtcacaca attatggcag aggccataga ggaaatagac cacctcgagc      2100
     taaccacaac gggaacgatc acagggcgca tacagcaaat atagctgagc aagcacccga      2160
     acaaccacgt caacgtcaac ctgtgaacca ggagcaaaac caagcagagg aagcgaactt      2220
     aatagatttt tttcgctaat ttcagtgtta aaaaagcact aagagccaaa tttgaattat      2280
     tcggaaggag tatagaattg atagtagaca gcggagcatc ctgttgtcta ctggacaaag      2340
     agtatattcc gaaaaattgt aaaataaata agtcatcaac cattgaagtc agaggagtaa      2400
     atggaataac acatacattg ggatatgtgg atacatcttt aggccatgag ttggcagagt      2460
     atcctgttag atttcatata ctggagcaat taccagcaaa cgttattggt ttgattggta      2520
     caaacttttt gaaaaaattt ggagcaaaaa ttgactttgc aaaaatgaag atggaattca      2580
     caattccgag tggtgaaata catttcacaa taccaccaag atatgaatat attacataca      2640
     tagaaacgga attcgccgaa acatgtgtgg tactgaacca gaaagttcag ccaaatgtgt      2700
     ttgtggccaa ttctatagca aatcccgtga atggtaaaat accggtgcga ttggtgaata      2760
     tttcaaataa accagttgtt attaaagatt tgaaaccaag gatagcatta gctgaaaact      2820
     acaatgttat agaattgaaa aaggatgatc aaaaatacga caaaattcga gcgagcaaat      2880
     tattggaaga attaaaatta aatcacttat ctggtagtga tgaaaaagct attaaacaaa      2940
     tttgcttgaa atattccgat atattttgtt taaaaggcga taagcttggt accaccaatg      3000
     tttattgccc gtcattaacg gtcaagccaa acatccaacc agcatttagt aaaccttaca      3060
     ggcttccttt ctctcagaaa gaagaagtct gcaaacaggt ggaaaatatg cttaaagatg      3120
     gtatcattga agaaaccaaa tctgagtgga acagcccctt gttgctagtt cccaaaaaat      3180
     cagacaatga ttcaaagaaa tggagattag ttattgacta taggaaagtc aatacaaatc      3240
     ttcaagacga taaatttcca ttgcccaata tagaggaagt aatcgattcc ctcgcaggtt      3300
     ctcaatattt tactcatttg gatttgtcac aaggttatta ccagtgtgaa ttaaaaccgg      3360
     aggacagacc cattacagcg tttgcgacgc catccggtca gtatcaaatg accaggttac      3420
     cgatgggatt gaaaacaagc ccatcatctt tttctcgatt aatgacagta gcaatgtcag      3480
     gattaaattt gactaaatgt ttgatttacc tcgatgatat tattgtgttt gggaaaacat      3540
     ttgacgaaca caataagaat ttgatttctg tttttcagcg actacgagaa gtcaatttga      3600
     aactcaaccc cgctaaatgt aatttcttga agcaggagtt gatatattta ggacatttta      3660
     tttcaaagga aggtgtacta cctgatccac agaaaattga aactattaaa aattggaaga      3720
     gtccttcatc ctctgatgaa gttaagagat ttgtagcttt tgcgaattac tacaggaagc      3780
     atatacgaaa ttttgcgagt ttgtgtttac cattaaatta tttaactcga aaaggaatag      3840
     aattcaattg gagtgaagaa tgtgaaactg catttcaaca attgaaagag cggttcatca      3900
     aaccccccgt gttagattat ccagatttta gcgagaaaaa cacatttaaa ctacacactg      3960
     acgcatctgg ttacggaatc ggtgcagtac taagcaacaa aaatgataaa ccaatagctt      4020
     atgccagcaa aggtttaaat agcgctgaga aaaattattc aacaatcgaa aaagaacttt      4080
     tggccatagt ctgggcaatt cagcattttc gtgtatattt atatggacga aaatttgagt      4140
     tgtataccga ccatagacct ttagtttacc ttttcacatt aacggatcct tcgagtaggc      4200
     tgacaaaatt ccgtcttgcc ctcgaggaat tcaactttga cgtcttctac aaaaaaggtt      4260
     gtgaaaacgc tgtggcggac gcgctatcac gtatttcaac aaccgaattg agagacatgc      4320
     aagaaaaact cagcaatgag gcattcgtaa cgacccgaat gcagtcgaag aaggaaaata      4380
     ctaattctac taaagaggtg atcaatggcc atgacgcttc aagtggaaaa atagttcaac      4440
     tgaaagtaaa aacaaataat ttttctgata acgttacatg gattcctgaa agagaagaaa      4500
     ttataattaa accaacagat accttggtct cgttacgacg aacaatggag gaacttggtt      4560
     caatatgtaa aaaatatggt gtcggagaac tatacattca aatagacgat gattgtgcgc      4620
     acaaatttta tgaaaatatt atgcaaaatg atttagcaaa aagggtaccc tcaattttaa      4680
     aaatatcaaa taaagtaaaa atcatcaatg acgacactac gaaaaagtta atcctgaacg      4740
     attatcacat attgcctact gcaggtcatg caggtattaa acgaacaatt aacaccatta      4800
     ggcaaaaata ttattggaaa ggcattaacc aagatgtagc aaaatttata aaatcttgtg      4860
     agaaatgcca aaaatataaa tcaattaatg ttgcgaaacc accgatgata gtaaccacta      4920
     cagctgaaag tgcatttcaa aaaatttatt tagatttagt gggtccactt ttaccctctg      4980
     atggatatga atatatattg acaacgcagt gcgaactgac aaagttcatt actgcaacac      5040
     caattaagaa caagacaacg gaagctgtag ctgaagcttt tatgaaaagt atcatactga      5100
     agtatggtgt gccagataga attgcttcag acagaggagc agaattcatg tctgaattgt      5160
     ttactaaagt cgcacaactt ttgaacattg aaaagctgaa cagtacagca tattatcacc      5220
     aatcaattgg agcattagaa aatactcata aaagccttgg gaattttcta agggtccaat      5280
     gtgacaacaa gctcttttca tgggcaaact gggtgccgta ttatgaattt gcatataata      5340
     atacggtaca ttctgcaacc aaatacactc cgttcttcct agtttttggg agaccttcaa      5400
     aaatgccttc taacttggtg gacagccgcc ctgagcctct gtataatttt gaagattact      5460
     gtaaaagaat aaaagcaaca ttacagatca gtcatagcga agttagagac agacttattc      5520
     aggaaaagac aaaaaggata gtaggcataa atacaaaatc aaaggaaaca acttaccgga      5580
     aaggagattc tgttctcatt aaaaatgaga cagggaaaaa actagacccg agatatgatg      5640
     gtccgtacca cgtagtggag gacatgggta caaatgtaaa aatcagtaat aacaataaag      5700
     aagacatagt acataagagt aggattaagc tttttattga ataggaatac gcatttttaa      5760
     acattttatt tgataggatt aaacatttta aacaaatttt tggataggat tgaacattta      5820
     ttcattttat ataaaaatat taattatttt aaacattttt ttttatggaa gaggattgac      5880
     aattttatag gacgtgtggt ggatgcgtaa ccttgagaag gtcaagtcca agatacgagg      5940
     tatcgaggat tagtgtgtat catcacgtta ctgtaggatt gtacctttag agtgaaggaa      6000
     aacatattgt atcagataga tttaaatttt taactgtaga taaaaattta aataaaatat      6060
     gatagggcg                                                              6069
//
ID   Gypsy-593_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-593_AA_;
KW   Ty3_gypsy_Ele155; Gypsy-593_AA-I; Gypsy-593_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-267
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 267 BP; 85 A; 56 C; 66 G; 60 T; 0 other;
     tgtggtggat gcaccccctg tttacgccta tgtgcggcat gaaggaggtc gtggaatcga        60
     acgatgagtg ttatgctttg taagcataaa catccagcgt tcgagaacga taacctaccg       120
     taatgcacac gcagcgaaat gggctgtagc ataccacctc ggtagaatgc tagagttaag       180
     taagaatgaa aaataaatga gaatgaaagt aaccatagac cggaccagtt cattggctat       240
     cactcaccca gtcattggga cataaca                                           267
//
ID   Gypsy-594_AA-I repbase;    DNA;    INV; 5764 BP.
XX
AC   .
XX
DT   13-JAN-2011 (Rel. 15.10, Created)
DT   14-JAN-2011 (Rel. 15.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-594_AA_;
KW   Gypsy-594_AA-LTR; Ty3_gypsy_Ele66; Gypsy-594_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5764
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [4908-5318] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1860..2480,2484..3887,4449..5402)
FT                 /product="Gypsy-594_AA-I_1p"
FT                 /translation="MRLINKLNEAEDLTLQRVVEQCNSLVNLKQDTVLVEN
FT                 PSTVNFVAHNKRNKPYRSNSNSPSRDQPRTPCWSCGGMHFSKDCRFRDHKC
FT                 RDCGKQGHKEGYCSCFSSKYSSSAPSSKKPSTKNKKNQRKQSTKTVTVRNI
FT                 SQGGSSSTSSLTVFLSGCNWTRDPMCRSFRTVRGSSLVDRKRKLQRVKLEQ
FT                 RPESLWILSRSCGVASPTTSRNRVSATLPLLTSSLTFWGLNSWICLDCGTK
FT                 TPVQLVLKGTPKPVFRPKRPVAYSMESAVEEELHRLESLGILKKVDFSDWA
FT                 APIVVVRKPNGAVRICADFSTGLNSALEPNRYPLPLPEDIFTKMANCRYFS
FT                 HIDLSDAYLQVPVDEASQQLLTINTHKGLYQFTRLSPGVKSAPGAFQQIMD
FT                 TMLAGLKFTVGYLDDVLVGGRTKAEHQQNLQKVLARLQEFGFTVRIEKCTF
FT                 SMRQVKYLGQVLDGDGIKPDPDKVAAIVNMPPPHDVPTLRSYLGAINYYGK
FT                 YVKEMRTLRQPMDELLKVDTKFDWSPACQKSFDRFRELLQSPLLLTHYNPS
FT                 VDIIVSADASSVGLGARIAHRFPDGSVKAIYHVSRSLTAAETNYSQVEKEG
FT                 LALVFAVTRFHRMLFGRKFTLETDHKPLLQIFGSKKGIPTYTANRLQRWAL
FT                 TLLLSTTSKFAMSPPTASVTRTYYQDFWSIPSQSGLGSSSNEGHHYSNNLA
FT                 NSPWNLCKIRTYGQPETLVTDNGTQLTSDKFEAYCAANGIIHLKTAPYHPQ
FT                 SNGLAERFVDTFKRTLKKIIAGGEALDEAIDSFLLCYRSTPCRSAPDGKSP
FT                 GELLYGRPIRTSLELLRPPTPYNESTDEQEKQFNRKHGTKAREYHPHDLVW
FT                 AKVYSANTRTWQPGRVIERIGSVMYNVWLSSKQNLIRSHCNRMRSRYESEG
FT                 SARNISAPANTQVPLSILLDSWGLRSTVTDTEDESSQPTPLPAALLDDLQP
FT                 IQRRQRTPQSNTQQPPIPTRQSSRIRRLPVRYEPYSLY"
XX
SQ   Sequence 5764 BP; 1663 A; 1389 C; 1303 G; 1409 T; 0 other;
     gtggcgacga ggcggtagta aattcgtgct aaattcgcgc gttcatcccg agaaaaggcg        60
     ttcttcgtgg atcggtagtg ggagacgaaa ttgtgcgatg gcgactaaca acgccaatag       120
     tgcagcaggt tctggaggcc aacaacagtc gggcaacatc acggacacca ttgttcagat       180
     cctccgtaac caacaagcgc ttatggggca aatgtcacaa cagctggcag caactcaatc       240
     cgccatcaag agtttgtccc gcgatgaggt tgtgctcgat tccctctcaa gcaatatgca       300
     ctgtaagact aaagtaccct ttaaagggta aaaaagtacc ctctttgaga gaaactagtt       360
     taactcataa aaagagtaaa gggcctgtac ccattaaaga gtaaacggct tgtacgtcaa       420
     actaacgagt aaattttacc cactattcga aataaattca gttaggaaag agagtaaatt       480
     ttactctgtt tctagtctta cgatttataa taacaatttg aaatcaattt atgaataata       540
     ataatgaata agggacaaaa atcatacagc actttattaa gatcaataaa tattgcattt       600
     gtttaatatt agcattaagt tatatataaa agtattgtaa aaattctgct gcgtgggggg       660
     atgctgcgtg ccacgaccgt ctctcgggca tttggccgca gtttcctctc tggtatcatg       720
     ctcctaactg aacgaacagc aacgaagttt ttggttctcc aatccattct gtaaaaacaa       780
     cagcgtttct tgaaatgaaa tgaataatat ttttcgattt tggactaacc tgcaaatcta       840
     gacactcctc cattatcagc gacccagatg cgactccagt tacaattaag tataacggac       900
     tgaagaacag catccgccaa aatattttaa gaactttttc actcattaaa gggtaaacca       960
     ctggaactta caaatgggca aaatttaccc actatgcaaa attttgaact acccttcatt      1020
     ttgacagctt catatatcag aaaatagtgg gtacttttta caccttaaag ggtaatgcca      1080
     ggtttacagt gtggtggaat tcgtgtacaa caaggaaagc ggtaacacat tcgacgcatg      1140
     gttctctcgc tatagtgatc tttttgatcg agacgcgtcc aagttggatg acgccgagaa      1200
     agtgcgttta ctcctacgca agctcagccc accggatcac gagcgttata ccatttttat      1260
     cttgccgaaa actactcggg aattcacttt caccgagact gttgaaaaca cgggccctcc      1320
     aagcttgtca accacatatt gatgcaccgt ggccaacatg attatgacat ttttgggaat      1380
     ctgacacttt tgggaaatct gacaattttg ggttgtacac gttagcttat aactactcat      1440
     taacgtgggt ttaagctggg taaggcgcat aatgacggaa ttgattttag tgtgttattg      1500
     cttaaacatt acacgattcc tagaaatacg caagtaaatg agtaaacaat tgtgtaagcc      1560
     actaaataaa aggagaaaat atcttcaacg tgttcttgcc gaaaactact cgggaattca      1620
     ctttcgccga gaccttggtt gaaaagctaa aggcgctctt cggtgccacc atttccatct      1680
     ttcgccggcg ctataactgt ctacaaacaa ccaaagaaga cagtgaagat tatctcgcct      1740
     attcatgcaa ggtgaataaa tcatgcgtcg atttcaagtt gtcggagttg accgaagaac      1800
     aattcaagtg tttgacgttt gtttgtggac tcaaatcgaa gcaagatgcg gagatccgaa      1860
     tgcggcttat caacaaactg aatgaagcag aggatctcac tctccagcga gtggttgaac      1920
     agtgcaacag cctggtgaac ctcaaacagg acaccgtgct tgtggagaat ccgtcgacag      1980
     tgaattttgt agcccacaac aagcgaaaca agccatatcg gtctaacagc aacagccctt      2040
     ctcgagatca acctagaaca ccctgctggt cctgtggcgg gatgcatttc agcaaggatt      2100
     gtcggttccg cgatcacaag tgtcgtgact gcgggaaaca gggccacaaa gaagggtact      2160
     gctcttgttt ctcatcgaag tactcatcca gcgcacctag ttcgaaaaag ccaagtacga      2220
     agaacaagaa aaatcagcgg aagcagtcga cgaaaacagt gacagtccga aacataagcc      2280
     agggcggaag ttcatcaacg tcaagcttaa cggtgttcct ctccggctgc aactggacac      2340
     gggatccgat gtgtcgatca tttcgcaccg ttcgtggatc aagcttggtc gaccgcaaac      2400
     gaaaactgca acgtgtcaag ctagaacagc gtccggagag cctctggatc ttgtctcgga      2460
     gttgcggtgt ggcatcaccc taaacaacgt cacgaaacag ggtaagtgct acgttgccgc      2520
     tcctaacgtc cagcttgaca ttttggggat tgaactcatg gatatgtttg gattgtggaa      2580
     ccaaaactcc tgtccagttg gtgctgaagg gaactccaaa accggtgttt cgacccaaac      2640
     gaccggttgc gtacagcatg gagagcgcgg tggaggagga acttcatcgg ttggagagtt      2700
     tgggaatcct gaaaaaggtc gacttttccg actgggcggc cccaatagtt gtcgtccgta      2760
     aaccgaacgg ggcggttcgg atatgcgccg atttctcaac aggcctgaat tctgcgttag      2820
     aaccaaaccg ctaccctctt ccattacccg aggatatttt cacgaagatg gccaattgtc      2880
     ggtatttcag ccacattgat ttatccgacg cttatcttca ggttcctgtc gacgaggcaa      2940
     gtcagcagct tctgaccatt aacacccaca aaggcctata tcagttcacc agactatcac      3000
     ccggcgtgaa atcggccccg ggggcctttc aacaaataat ggacacaatg ctcgctggac      3060
     tcaagttcac tgttggttat ttagatgacg ttctggtcgg aggacgcacc aaagcagaac      3120
     atcaacaaaa tctccaaaaa gttctcgctc gcttacagga atttggcttc acggtgcgca      3180
     ttgaaaaatg taccttcagt atgcgtcaag tgaagtacct gggccaagtt ttggatggag      3240
     acggcatcaa acctgaccca gataaggtgg cagcaatagt caacatgccg cccccacatg      3300
     acgtgcccac tcttcggtcg tatttgggtg caatcaatta ctatgggaag tatgttaagg      3360
     agatgcgcac tcttcgacaa ccgatggacg agctcttgaa ggtggacacc aaattcgatt      3420
     ggtcgcccgc ctgccagaag tcattcgacc gtttccgaga gctacttcaa tcgccattac      3480
     tgctcaccca ttacaaccca tcagtggaca tcattgtttc agcagatgct tcatccgtcg      3540
     ggctgggagc ccgcattgcg catagattcc ctgacggatc tgtgaaagcc atctaccatg      3600
     tgtcccgtag cttgactgct gctgaaacaa attacagcca agtagagaaa gaaggcctgg      3660
     cactagtgtt cgccgtgact cggttccacc ggatgttgtt cggtagaaaa tttaccctgg      3720
     aaaccgatca caagccgtta ttacaaattt tcggctcgaa aaagggcatt cccacctaca      3780
     cagccaacag gctccagcgg tgggccctta cgcttcttct ctctacgact tcgaaatttg      3840
     ctatgtctcc accgacagct tcggtcacgc ggacgtacta tcaagactaa tcaatagcca      3900
     cgtgcggccc gaagaagaat acgttattgc ctctctagag ttggaacaca gcgttcgagc      3960
     caccatcaat gaatcgatgc aagctttccc actctcgttc aaggtcattc aaggggcaac      4020
     caaaagagac gactgcttac ttcgaaccat acgttacgtc aatgaaggtt ggccatcgaa      4080
     taaaaagaat atagctgatc cagctatcga gcaattttat ttacgtcgtg aatgtctttc      4140
     cattgttgct ggatgcctca tgtatggtga aagattagtc atcccatcag tctgtcgcaa      4200
     gaaagtgctc gatcaactgc acaaggggca ccctggcgtc gaacgtatgc ggtccgtatc      4260
     tcgtcagtat gtttattggc cgaatataga cgacgacgtg tccaagtttg tccgttcctg      4320
     caacgagtgc gcaagcgtag ccaagacgga tcgaaaaacg aacctggagt cctggcccaa      4380
     accagcaaag ccgtggcagc gtctgcattt ggatttcgcc ggccctttag atgggagcta      4440
     ctttttgatt ctggtcgatt ccttcacaaa gtggcctggg aagtagttcg aacgaaggac      4500
     atcactacag caacaacctt gcgaattctc cgtggaatct ttgcaagata cggacatacg      4560
     gacagccgga aacgttagtt accgataacg gaactcagct aaccagcgac aagttcgaag      4620
     catactgcgc agcaaatgga atcatccacc tcaaaaccgc tccatatcac ccgcagtcca      4680
     atggacttgc agagcggttt gtcgatacat ttaaaaggac cctcaaaaaa atcatcgccg      4740
     ggggggaagc cctcgacgaa gccatcgata gttttctgct ttgctacaga tcaactcctt      4800
     gtcgcagtgc tccggatgga aaatctcctg gtgaattact gtacggaagg ccgatacgaa      4860
     catctttgga actgctccgg ccaccaacac cgtacaatga gtcaacagat gaacaagaga      4920
     agcagttcaa tcggaagcat ggaacgaaag ctcgcgagta ccatcctcac gatctcgtct      4980
     gggctaaagt ctactcagca aacacgcgga cctggcagcc tggaagagtg atcgagcgta      5040
     tcggtagcgt catgtacaat gtttggctat catcgaagca gaatctaata cgatcccact      5100
     gcaatcgaat gcggtcgcgc tatgagtctg aaggcagcgc gcgaaacatc agtgcaccag      5160
     caaacaccca agttccgctc tcaatactcc tggacagttg gggtcttcga agtaccgtaa      5220
     cggacaccga agatgaaagt agtcagccta caccactgcc ggctgcgcta cttgatgatc      5280
     tgcaaccgat tcaacgtcgt caacgaactc cccaaagcaa cacacagcaa ccaccgattc      5340
     ctactcgaca gtcttcaaga atccgaaggc tgcctgtgag gtacgaaccg tacagccttt      5400
     attaacaggg ggaggtgttg ggaggacaac cctatcccaa taacggacgc aaccgaaaca      5460
     accaccaagg ctcttacgct gacagccgtc agcttgtgac agatgtcatg ggaagtttcg      5520
     gcattcgtca ttccattgtt ggccaccatc atcataaaat ttgataaaat atacttcaat      5580
     ttttaggtaa acatcaataa aatcaatgtt ttatacaact ttggcgaccc gtaactaaaa      5640
     attgtgacgt gctaggaaat ttctgagaac gacatcagat ttagcaaccc caaatctttt      5700
     agagacacat aatttgatcc ttgagacacg caaaaatgtc atttttgttg cgctgtgtta      5760
     caat                                                                   5764
//
ID   Gypsy-594_AA-LTR repbase;    DNA;    INV; 121 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-594_AA_;
KW   Ty3_gypsy_Ele66; Gypsy-594_AA-I; Gypsy-594_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-121
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 121 BP; 30 A; 26 C; 23 G; 42 T; 0 other;
     tgcgatcggc ggctcgcgtg catacacgtt ttaagtcatt cgttctgcct tttatttaat        60
     aaagttatgt tttaaatcgt aattacgagt cgcgtcacta gacatatctc gtatcgcaac       120
     a                                                                       121
//
ID   Gypsy-595_AA-I repbase;    DNA;    INV; 4334 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-595_AA_;
KW   Gypsy-595_AA-LTR; Ty3_gypsy_Ele22; Gypsy-595_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4334
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3466-3942] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..1674
FT                 /product="Gypsy-595_AA-I_1p"
FT                 /translation="MGSSDEEENVRAPQFTFHDIGDSLEKFSGERSDRGVL
FT                 EWLNDFEKTCDNFGWNSVQKFVYGRRLLKGTAKLFVSSSSGLNDWAALRAA
FT                 LEEEFEDKVTSAEIHELLRNRKKKSDESYLQYIYHMQNIAKRGGIEEEAVC
FT                 DYVVRGITDDPVNKVCLFGATKVNDLKDRVKQYEKMKNQMRDSGRSSAKPV
FT                 VRAEKEKVKKSSKISTKSDTSESTAEEVRCYNCGNRGHYANDCDMKSRGPK
FT                 CFVCGDFGHRAKDCKQQKEKDNEVNILTEERMPVLQISVKNIELRALFDTG
FT                 SRHNLICESAYKRIGEPALTNTPMVFSGFGAMKTRARGKTVVGICVDSEEQ
FT                 PEMPFYVVPVGSMSYDAVLGMDALNRLDAEINKEGVKINKKKNEAKCDDE"
FT   CDS           1984..4335
FT                 /product="Gypsy-595_AA-I_2p"
FT                 /translation="MRVCVDYRQLNQKVVKDCFPMRNIEDQVDSLKKAKVF
FT                 TTLDLKNSFFHVPVEVSSQKYTSFVTHTGQYEFLKTPFGFCNSPASFSRFV
FT                 ADVFRDLIRSGRLIIYVDDAIIPSESEEENIEVLKEVLKVAAENGIQFNWE
FT                 KSQFLKNEVDYLGYVIGDGSYRISPTKIRAVQYYREPSNVKELQRFLGLTS
FT                 YFRKFIPEYALIAKPLTSLLKKDVSYEFGDSQRKSFMSLKQCLVSDPVLKI
FT                 YDPDAETELHTDASKEGYGAVLLQKSDDGKLHPVYYMSQQTSSAEKNYSAY
FT                 HLEVLAVIKAVERFRVYLLGIPFKIVTDCAAFQHTMKAKQLGHRVARWALL
FT                 LEEFTYTVEHRAGTRMKHVDALSRAPVMLTSSDPMVEMIRSAQKRDEKLKV
FT                 ITELLKTQTFDDYFVSDDLLMKLIDGREVIVVPAELQSEVIRRAHENGHFG
FT                 VRKLEDVIKRDFFIPSLAEKMKRQIECCVKCILANRKRGKVDGLLAPIPKG
FT                 DVPFDTYHVDHLGPMDVTEKMYKYLFVVIDAFTKFTWIYPTKTTNAHEVIQ
FT                 RLQNQSELFGNPRRIISDKGAAFTSNDFKVYCAEQNIEHVEITTGVPRGNG
FT                 QVERSNQVILAMLTKLSVNDSTKWYKHVANIQRWINASVHQSTTVSPFEAM
FT                 FGVQMRHAGDVRLCELLEEIRVAQFDDQRSGIRAKARAAIEKAQQDQRRSY
FT                 NLRAREPPTYKIGDVVAIKRTQFGPGRKYAAEFLGPYKITNVKPNNRYDVE
FT                 KITGEGPKKTSTAASHLKPYRIWGPEPLQDDRV"
XX
SQ   Sequence 4334 BP; 1258 A; 833 C; 1222 G; 1013 T; 8 other;
     tgggggctca accgggattg cctcccagtg ttttcagttc cggaagattg agtggaaagc        60
     gattttmgtt catgtgttga attgaaattt cgtgccgcca tattgtgtga tcgaatgttg       120
     aaaaaatccc gagtgttgtg agattggaga gaagtctcca aattgagagt tgtgagaacg       180
     aagcgaaatc ctaccaccac tgtgagttat gtggtcgaat ggagaatatc ttcgcctgtg       240
     agagcagagt agtgtttgtg tggacgtgaa acgagatgct gcataatgtc cgaaagtgaa       300
     gagcagcttg cgcaacaatc smttcggaat ttgcgagaac tgtgtgcgga gaaaaacctc       360
     tcgactagtg gcaaaaaggc gacgctcgtg cgaaggcttt taggaaatag cacggtcgaa       420
     gacgaaacag tggtaaacgt tggtggacaa aaagtcacca catcaactcc gaaaattacg       480
     agaaaccagc gcgaaatggg ttcgagtgac gaagaagaaa atgtgcgcgc gccgcagttc       540
     accttccacg atatcggtga ttcgctcgaa aagttttccg gagaacgttc cgatcgcggt       600
     gtgcttgagt ggctgaacga tttcgagaag acgtgtgaca atttcggttg gaatagcgtg       660
     caaaagttcg tttacggccg cagactgttg aaaggcactg cgaagctgtt tgtgagtagt       720
     tcatccgggc tcaatgattg ggctgcgttg agagccgccc ttgaagaaga atttgaagat       780
     aaagtgacga gtgcggaaat ccacgagctg ctgcgaaatc gcaaaaagaa gagtgacgaa       840
     tcctatctgc agtatatcta ccacatgcaa aacatcgcga aacgcggtgg aatcgaagag       900
     gaggctgtgt gtgattacgt agttcgtggc ataaccgatg atccggtgaa caaagtgtgt       960
     ttgtttggtg cgaccaaagt gaacgatttg aaagaccgcg tgaagcaata cgagaaaatg      1020
     aaaaaccaaa tgcgagacag tggtcgtagt agcgcgaagc ccgtggtgag agccgagaaa      1080
     gaaaaagtga aaaagagctc aaaaatctcc accaagagcg acacatccga gtccactgcc      1140
     gaagaagtgc ggtgctacaa ttgtggaaat cgtgggcact atgccaatga ttgcgacatg      1200
     aagtcacgcg gaccgaagtg ctttgtgtgt ggtgattttg gtcaccgcgc gaaagactgc      1260
     aagcagcaga aagagaagga caacgaagtc aacattctca ccgaagagag aatgcccgtg      1320
     ctccagatca gtgtgaaaaa tatcgagctg cgtgcgttgt tcgatacggg cagtcggcat      1380
     aacttgatat gtgaaagtgc atacaagcga attggagagc cggcgcttac caatactccg      1440
     atggtgttta gtggttttgg tgcaatgaaa acgcgagcac gtggcaaaac cgttgttggt      1500
     atttgtgttg actcggaaga gcaaccagag atgccatttt atgtcgtgcc ggtcggtagc      1560
     atgtcatatg atgctgtttt gggcatggat gcgttgaatc gactggatgc ggagatcaac      1620
     aaagagggag tgaaaatcaa taagaagaaa aacgaagcaa agtgcgacga cgaggktgaa      1680
     atgatgatgg ttttggaagg ggagaagagt ggtgttgata tcgacgtgcc accccgatat      1740
     gcaagtgtta tcagcgagat gattaagaac tatsaaccaa aaagcgatgt gaaaagtcga      1800
     gtggaaacaa aaatcatttt gaatgacgac gttccagtgc acattcctcc gcgacggttt      1860
     gctccgaagg aaaaagcgat cctggaaaaa actgtagacg agtggctcaa agctggcata      1920
     atcaaggaga gcgtcagtga atatgcaagc cccgttacac ttgcacccaa gaaaaacggt      1980
     tcgatgagag tgtgtgtgga ctatcgwcag ttgaatcaga aggttgtgaa agattgcttt      2040
     ccgatgagaa acattgaaga tcaagtggac agtctcaaaa aggcgaaagt gtttactaca      2100
     ctcgatttga aaaactcktt tttccatgtg cctgtggaag tgtcaagtca gaagtacact      2160
     agtttcgtaa ctcacacggg acagtacgag ttcttgaaga ctccattcgg attttgtaac      2220
     agtccggcta gcttcagtcg ttttgtggct gacgtgttcc gtgacctaat aagaagtggt      2280
     cggctgataa tttatgtcga cgatgcgatt attccgtcgg agtccgaaga agaaaacatc      2340
     gaagtgttga aggaagtgct caaagtcgct gctgagaatg ggattcagtt taattgggag      2400
     aaatctcaat ttttgaagaa cgaagtggac tatctgggtt atgtgattgg tgatggtagt      2460
     taccgcatat ctccaacgaa aattcgtgct gtgcagtatt accgtgaacc ctccaatgtg      2520
     aaggagttac aacgtttcct gggtctcacg agctacttcc gaaaattcat tccggagtac      2580
     gcgttgattg cgaaaccgct cacttcgctt ttgaagaagg atgtgtcgta cgagttcggt      2640
     gattctcagc gaaaaagctt tatgtcgctg aaacagtgtc tagtgtccga ccccgttttg      2700
     aaaatttacg atcctgatgc cgaaacggag ctgcacaccg atgcctccaa ggaagggtat      2760
     ggtgctgtgc ttcttcagaa gagtgatgac gggaagctgc acccagtgta ttacatgagt      2820
     cagcaaactt cgagtgccga gaagaattac agtgcgtacc atttggaagt tttggcagtg      2880
     ataaaagccg tcgaaaggtt ccgcgtgtat ctgttgggaa ttccgttcaa aatcgtgacg      2940
     gattgtgcgg catttcaaca tacgatgaaa gcgaagcagt tgggacaccg tgtggcgagg      3000
     tgggccttgc tgctggaaga gtttacstac actgttgaac accgagcggg aaccagaatg      3060
     aagcatgtcg acgcgttgag tcgagctcct gtgatgctga cttcgagtga tccaatggtt      3120
     gaaatgataa gaagtgctca gaagcgagat gagaagctaa aagtgattac cgaactattg      3180
     aagacacaaa ctttcgatga ttattttgtg agtgatgatt tgctgatgaa actgattgat      3240
     ggacgagaag tgattgttgt tccggcagag cttcagagtg aagtgatccg aagagcgcac      3300
     gagaacggac attttggtgt gcggaagctc gaagacgtta tcaaacgtga ctttttcata      3360
     ccgagtctgg ctgagaagat gaagaggcag attgagtgtt gtgtaaagtg cattttggcg      3420
     aatcgcaagc gaggaaaagt tgacggattg ttggctccga ttccgaaagg tgatgtgcct      3480
     tttgacacgt accatgtgga tcatcttgga ccaatggacg tcaccgagaa gatgtataag      3540
     tacttgtttg tcgttatcga tgcatttacg aagttcacgt ggatataccc gacgaaaact      3600
     acgaatgccc atgaagtgat ccagcgattg cagaatcaaa gcgaattgtt tgggaaccca      3660
     cgaagaatca tcagtgataa aggggcagcg ttcacctcga atgactttaa ggtgtactgt      3720
     gccgagcaga atatcgaaca tgtggagatc acaaccggag ttcctcgggg aaacggccag      3780
     gtagaaaggt cgaaccaagt gatactggcg atgctcacga agctcagtgt gaatgattcg      3840
     acgaagtggt acaagcacgt tgcgaatata caacggtgga ttaatgcgag cgttcaccaa      3900
     agcactactg tgtccccgtt cgaagccatg tttggggtac agatgcgcca tgccggtgac      3960
     gtacgattgt gtgagttgtt ggaagagatt cgtgtcgctc agtttgatga tcaacgaagc      4020
     ggcatcagag caaaagccag agcagcgatc gagaaagcac agcaggatca gcgacgatca      4080
     tataatctgc gagcacgaga gccacctacc tacaaaatcg gcgatgtggt tgctatcaag      4140
     cgaacgcagt ttggtccagg taggaagtac gcggctgaat ttctcgggcc gtacaagata      4200
     accaacgtca agcccaataa ccgatacgac gtcgagaaga ttaccggaga aggaccgaag      4260
     aagacatcga cggcggctag tcatctgaag ccgtaccgga tctggggacc agaacctttg      4320
     caggatgacc gagt                                                        4334
//
ID   Gypsy-595_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-595_AA_;
KW   Ty3_gypsy_Ele22; Gypsy-595_AA-I; Gypsy-595_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-205
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 205 BP; 62 A; 32 C; 49 G; 61 T; 1 other;
     tgtgaggatg cgagagaccg atgaagaaga gtagtaaatc gttttcgaag ccaagcgcag        60
     cagttgagtt gaggtcttcc gcgagawtag gagtgtttca gaccgctccg tgataatttg       120
     gtgaagtgat ttatttccat attttaacac tgaattggca atcattaaat aaagaaaaat       180
     cgtttaaacg cgtctttttc ttaca                                             205
//
ID   Gypsy-596_AA-I repbase;    DNA;    INV; 4401 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   03-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-596_AA_;
KW   Gypsy-596_AA-LTR; Ty3_gypsy_Ele69; Gypsy-596_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4401
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [3]
RP   1-4401
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-MAY-2019).
XX
DR   [3] (Consensus)
XX
CC   Positions [3509-3994] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1111..4389
FT                 /product="Gypsy-596_AA-I_2p"
FT                 /translation="SEIHYGRTQRKPSQNAAKDSAADISVISHEVYQQLGC
FT                 PTGKQPSINVVNASGDDMGLILELTCSITLNGMSKQGRCFVSKADDLNLFG
FT                 AEWIELFGLWDVPFNAVCNQVSMKLHPNAVGLVDSLKAKYSNVFNESLGLC
FT                 TKKQVSLTVKPGNRPVYRQKRPVPYASTEKIEDELNRLQALGIISPVTYSE
FT                 WAAPIVAVRKPNGKVRICADYSTGLNERLESNHHPLPLPQDIFAKLAGKKI
FT                 FSQIDLSDAYLQVEVSEESRKLLTINTHKGLYQFNRLSPGVKTAPGEFQQI
FT                 VDSMIADLEDTSGYLDDIIVASDSLEEHLEQLDRLLARIEEYGFHLKIEKS
FT                 NFFMQQIKYLGLIVDEEGIRPDPEKIKAIVNMPAPHDVQTLRSFLGAVNYY
FT                 GKFVRTIHDLRQPLDALLKKDVKWNWSPACQKSFEQFKNVLQSDLLLTHYN
FT                 PNLEMIVAADASQHGIGAVLLHRFPDGSVKAVCHASRTLTDAERNYAQGEK
FT                 EGLALIFACTKFHRMIFGRRFTLQTDHKPLLGIFGSKKGIPVHTANRLQRW
FT                 ALTLLQYDFKIEFKKTESFGYADVLSRLIGEHSKPDEDYVIASLQIEEDIR
FT                 NIQSEVLSALPVTNQMIVQETRKDKTLQTILKQVRENWPSVKLPDAVSSFY
FT                 KRRESFCEADGCLMFMDRIVVPQSLQSPVLKQLHVGHPGMQRMKSLARSYV
FT                 YWPNIDADIEDFVRKCGSCASASKAPVKTTLSSWPIPSTPWSRLHVDYAGP
FT                 VRGKFFLVIVDAHSKWPEMFATNNSTATTTIKKLKECVSRFGCPLTIVTDN
FT                 GTQFSSEAFAKFCQDFGIDHVKTPPFHPQSNGQAERFVDTLKRALLKIGGE
FT                 DVEDTLQIFLQTYRCTPNPSLPDNKSPAEVLLGRKPRSVLDLMKPSVPEPS
FT                 HINEVQNMKFNKKHGAKHRSFEAGDAVFAEIHIRNERYWAQGTVIEKKGSV
FT                 VYNILLEDKRRRGLIRSHVNQLRRRTPDGEHQPTAEQPLPLEILLEEFNCP
FT                 GQLNQVENIENLPILVDNPVPDPGSPRAGTFPEDVMQNPMEDAVPGPSQIN
FT                 QTTTDPVPSRKRSLPFRGPSGRKRWLPSHFEYYELF"
FT   CDS           join(52..471,416..1186)
FT                 /product="Gypsy-596_AA-I_1p"
FT                 /translation="MSPEFEANLLRILENQGRILQELSASRAAASQQVGSG
FT                 DGNLQPNQQHPEDPRRQNQTEFLIESLSSSISEFHYDAEAGVTFEAWFAKY
FT                 EDLFEEDARKLDGPAKVRLLLRSINAAAHKKYVNYILPKKPKDVSFEDTIN
FT                 TTTSYRRNRRTSRSKTPSTLEVNFRSAHIAVQPAVPVSTAQEGSGRRFFTY
FT                 AGIVNEKCEEFKLPEIXADQFKCLXFVXGLNSXKDXDVRTSLLSKIENANP
FT                 ATPMTLHSLAEDCQRLLNLKKDTAMIEKSGNKSTVCAIKQPTKVKTTGQYQ
FT                 QQQQFSDVPNTPCWRCGEMHYSKNCNFIQHQCKSCKKVGHKEGYCACFQAK
FT                 PKKKNRGSKNQSAKAHGIYSINQVSIAANRKFTTVELNGSPVRMQLRIVQR
FT                 TSA"
XX
SQ   Sequence 4401 BP; 1285 A; 1042 C; 1039 G; 1026 T; 9 other;
     tattttggcg acgagaattt ttacgaagtc acgcacagtt acggcagcga aatgagtccc        60
     gagttcgagg caaatctctt gcggattctg gagaaccaag gacgaatcct tcaagaactt       120
     tccgcttcaa gagccgcagc aagtcaacaa gttggaagtg gtgacggtaa tctgcagccc       180
     aaccagcagc atccggagga tccacgccga caaaaccaga ctgagttcct gatcgagtct       240
     ttgtcaagca gcatcagtga attccattac gacgctgaag cgggagttac gtttgaagcc       300
     tggttcgcaa aatacgagga tctgtttgaa gaagacgccc ggaaattgga tggaccggcc       360
     aaggtcagac tcttgctccg gagcatcaac gctgcagcgc acaagaagta tgtgaactac       420
     atcctaccga agaaaccgaa ggacgtctcg ttcgaagaca ccatcaacac ttgaagtcaa       480
     ttttcggtcg gcgcacatcg ctgttcaacc tgcggtacca gtgtctacag ctcaagaagg       540
     gtcaggccga cgattcttca cttacgctgg aatcgtcaac gagaagtgcg aagaattcaa       600
     gctgccsgag atcamkgccg accagttcaa gtgtctgmts ttcgtttscg gcctsaattc       660
     awgcaaggac kcggatgtcc gaacttccct gctgtccaag atcgagaacg ctaatccagc       720
     gacgccgatg acgctacatt cgttggccga ggattgtcag cggctcctga atctcaaaaa       780
     ggatacggca atgatcgaga agtcaggtaa caaatccaca gtttgcgcca tcaagcaacc       840
     aacgaaagtc aagacaactg gtcaatatca gcagcagcag cagttctccg atgtcccgaa       900
     caccccttgc tggcgttgcg gagaaatgca ctactccaag aactgcaact tcattcaaca       960
     tcagtgcaag tcatgcaaga aagtcggaca taaagaggga tactgtgcct gcttccaggc      1020
     gaaaccgaag aagaagaatc gaggttcgaa gaatcaatca gcaaaagccc acggaattta      1080
     ttccataaat caggtcagta ttgcagctaa tcggaaattc actacggtcg aactcaacgg      1140
     aagcccagtc agaatgcagc taaggatagt gcagcggaca tcagcgtaat ttcccatgaa      1200
     gtctaccagc aattgggctg cccgaccgga aaacaaccgt ctatcaacgt ggtgaatgct      1260
     tccggtgacg atatgggtct cattctggag ttaacgtgct caatcacatt gaatggcatg      1320
     tccaagcagg gaagatgctt cgtatcgaag gcagacgatc tcaatctatt tggagctgag      1380
     tggatcgaac tttttggact atgggatgta ccgttcaacg cagtgtgcaa ccaagtatcc      1440
     atgaagcttc atccaaacgc tgttggtctg gtcgatagtt tgaaagcgaa gtacagcaac      1500
     gtgttcaacg aaagtctcgg actgtgcacg aagaaacaag tatcgctgac ggtcaagcca      1560
     ggaaacagac cagtctatcg tcaaaaacgc ccagttccat atgcatccac tgagaagatt      1620
     gaagatgaac tgaatcgact tcaagcactg ggaatcatat ctcctgtgac atactccgag      1680
     tgggccgccc ctattgtagc agttcggaaa ccaaacggca aagtgaggat ctgtgcagat      1740
     tattcgaccg gattgaacga gagattggag tcgaatcacc atccgttgcc gttgcctcaa      1800
     gacatattcg caaaattggc tggaaagaag atattttcgc aaatcgatct ttcggatgct      1860
     tatttgcaag tcgaagtctc cgaagaaagc agaaaattac tgaccatcaa cacgcacaaa      1920
     gggctatatc aattcaatcg actttctcca ggagtgaaaa cagcaccagg cgaatttcaa      1980
     cagatcgtgg acagcatgat cgccgacctg gaagacacca gcggttattt ggacgacatc      2040
     attgtagcca gtgattcctt agaagaacat cttgagcaac tcgaccggct gttggcgcgc      2100
     attgaagaat atgggttcca cctgaaaatc gaaaaaagca atttcttcat gcagcagatc      2160
     aagtacctcg ggttgatagt agatgaagaa gggattcgtc cggatccaga gaaaatcaag      2220
     gccatcgtca acatgccagc cccacacgat gtacagacgc tacgttcgtt ccttggagca      2280
     gttaactatt atggtaagtt tgtacgaacc atacacgatc tccgtcaacc gttggatgcc      2340
     ttgctgaaaa aggacgtgaa gtggaactgg agtccagcct gccagaagtc ttttgagcaa      2400
     ttcaagaacg ttttgcaatc ggacctgctg ttgacccatt acaatccgaa tttggagatg      2460
     atagtagcag cggatgcatc acagcatggc ataggagcag tcctacttca ccgtttcccg      2520
     gatggttctg tgaaagctgt ttgtcacgct tctcgcacgt tgacggatgc tgaacggaat      2580
     tacgctcaag gagaaaaaga aggactagct ctgatttttg cctgtaccaa gttccaccgt      2640
     atgatatttg gaagacgttt caccctgcag accgatcaca aaccactcct tggtatattt      2700
     ggttcgaaga aagggattcc tgttcataca gcaaacagat tgcagcggtg ggcgctcaca      2760
     ctgctacaat acgatttcaa gatcgaattc aagaagactg aaagttttgg atatgccgat      2820
     gtcctttctc gtttgattgg agaacattcc aagcccgatg aagattacgt gatcgcaagt      2880
     ctacaaatcg aggaagatat ccgtaacatt caatccgaag ttttatcagc tcttccggtg      2940
     acaaatcaaa tgatcgtgca agaaacaaga aaagacaaaa ctctccagac gattctcaaa      3000
     caagtacgtg aaaactggcc ttctgtgaaa cttccggatg cagtatcatc gttctacaaa      3060
     agacgtgaat cattctgtga agcagacgga tgcctgatgt tcatggaccg aattgtcgtt      3120
     ccgcagtcat tgcagtcacc tgtcctcaag cagttacacg ttggtcatcc tggtatgcag      3180
     agaatgaaat cccttgctag gagttacgtg tactggccga acattgatgc agatattgaa      3240
     gactttgttc gaaaatgcgg aagttgcgct tcggcatcaa aagctcctgt gaaaacaacg      3300
     ctttcgtcgt ggccgattcc atccacgcca tggtctcgtc ttcacgtgga ttatgctgga      3360
     ccagtacggg gaaaattttt ccttgtcatc gtggacgcgc attcaaagtg gcctgagatg      3420
     tttgcgacca acaattccac cgcaacaacg acgattaaga agcttaagga gtgtgtgtct      3480
     cgattcggat gtccactaac aattgtgacg gacaatggca cacaattcag ttcggaagcc      3540
     tttgcaaagt tttgtcaaga tttcggaatc gatcatgtga agactcctcc ctttcatcca      3600
     cagtctaatg gtcaagccga aaggtttgtg gatacgttga agagagctct tttgaagata      3660
     ggcggagaag atgttgaaga cactttgcag attttccttc aaacctatcg ttgcaccccg      3720
     aatccgtctt tgccggacaa caaatcgcca gctgaagttt tactgggaag gaaaccccgc      3780
     tccgttctag atttgatgaa gccatcggtt ccagagccat ctcacatcaa tgaagtacag      3840
     aacatgaaat tcaataagaa gcacggcgct aaacaccggt ctttcgaagc tggagacgca      3900
     gtattcgctg aaattcatat tcgaaacgaa cgatattggg cgcaaggaac cgttatcgaa      3960
     aagaagggta gcgtggtgta caacattctc ctcgaagaca aaagacgtcg aggtttaatc      4020
     agatcccatg tgaaccagtt gcgaagacgc acaccggacg gtgaacatca acctacagca      4080
     gaacagcctt tgcctttgga aatcttgcta gaagagttca actgtccagg tcaacttaat      4140
     caagtcgaaa acatcgaaaa tctccctatt cttgtggaca accccgttcc tgatcccgga      4200
     tccccaagag ctggtacgtt tcctgaagac gtgatgcaga atccaatgga agatgctgta      4260
     cctggaccat cgcagataaa tcaaaccacc acagatccag ttccgtccag aaaacgttca      4320
     ctacccttcc gaggaccttc aggcaggaaa cgttggctcc cttctcattt tgaatattat      4380
     gagcttttct gaggagggag a                                                4401
//
ID   Gypsy-596_AA-LTR repbase;    DNA;    INV; 124 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-596_AA_;
KW   Ty3_gypsy_Ele69; Gypsy-596_AA-I; Gypsy-596_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-124
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 124 BP; 44 A; 28 C; 15 G; 37 T; 0 other;
     tgttagagca gtaacccttg aactgccaag caagccatga ttcttatact aataatgaca        60
     actagaaaat atattcattc tttgttcaac ctccaaacta agcagttgtt cttactacac       120
     aaca                                                                    124
//
ID   Gypsy-597_AA-I repbase;    DNA;    INV; 6062 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-597_AA_;
KW   Gypsy-597_AA-LTR; Ty3_gypsy_Ele58; Gypsy-597_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6062
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4935-5414] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           928..2118
FT                 /product="Gypsy-597_AA-I_1p"
FT                 /translation="MSEYEKLKHLYNYIKKSINTPLTENTLREKSDSCKEI
FT                 YENLQIYFSENSVDEILISNAKKWYLEINQVLKAKLDNLNTKNQLDETTIS
FT                 MVQPEVERQFDVKQATALVQPYDGSAAGLESFIDSVNFLKELIQPNHTAMA
FT                 VKFLKTRLTGKARCGFPDTIVTIDALIEHIKIKCQDTLTPDLIVAKLNATK
FT                 QRGQILNFCEEIENLCSKLENSYISQKVPENVAKAMTTKAGVNALINGINA
FT                 SETKLILKAGNFSSIREALQKAQESATDNTSSQVFNLRNKQFNPNERKMNF
FT                 RGNGFNRNRNFGNCYRGGFSQRPQNNYYHNSSRGRYQRGGYHNGYNNRGRF
FT                 NDNRPRYDNPNRVYVANVDQPYGPPQNQNRDAPNRAAPQQQQQQQSQRNFL
FT                 GQC"
FT   CDS           2166..5759
FT                 /product="Gypsy-597_AA-I_2p"
FT                 /translation="MANSVCTLLVDSGADISIFKTDKILTNHNINYKVKTR
FT                 ITGITEGEIETMAITETVLNFGNGIRVNHSFHLVDANFPILTDGILGRDFL
FT                 SLFRCNIDYESWLLNFNIDNIAVSVPIQDTVNENYIIPQRCEVIRKIKDLK
FT                 ITEDMVLFSKEIKPGLFCGNAIISPTCQYVKFMNTTSRPINVSNVDLEFML
FT                 EPLTRYQILNTRKNNKPDDTQKRNNEILKEVDLTNVPDYAKNDLKQLITKY
FT                 TDIFSLPDEPVTTNNFYEQTINLNDPVPTYIPNYKTIHSQSNEIQSQVNKM
FT                 LKDNIIEPSVSSYNSPILLVPKKSTDDKKKWRLVIDFRQLNKKILSDKFPL
FT                 PRIDSILDQLGRAKYFSTLDLMSGFHQIPLDENSKKYTAFSTQSGHYQFTR
FT                 LPFGLNISPNSFQRMMTIAMSGLTPELAFVYIDDIIVVGCSMQHHLHNLSV
FT                 VFERIRKYNLKLNLSKCKFFNTEVTYLGHRITDRGILPDSSKYDTVKNYPV
FT                 PKNSDEVRRFVAFCNYYRKFVPNFATIAYPLNQLLRKNIKFEWSSKCEDAF
FT                 NALKSFLMSPKLLQYPDFKQTFILTTDASDVGCGAVLSQNIDGNDLPIAFA
FT                 SKSFTPGEKNKSVILKELTAIHWAIDYFKAYLYGRKFVIRTDHRPLVFLFN
FT                 MKNPTSKLTRMRLDLEDFDFTIEYIQGKTNVTADALSRIVTTSDELKSKSI
FT                 FTVNTRAMTKRKLKESKRSQELPDENKSQNNAVNNKPDQLVIYTTENPTET
FT                 RKLPKLRSAMENENLIFTLHEASQKNKIIIRITTQLRSIRQTLVFALSVLE
FT                 KEMQMKRITKIALSSHDCIFEWVPKETFKELVLKSIKNLQIIIYNPPKFIS
FT                 DLDEIKRILENYHQTPTGGHIGQHRLYLKLREIYNWTNMKSSIAQFIKACE
FT                 LCKLNKITKHTKEKLTITNTPSKPFEVVSIDTIGPLPKSNNNNRYAVTIQC
FT                 ELTKYVVLVPIPTKEANVIAKSLVENFILIYGKFLELKSDQGTEYKNEVLD
FT                 QICKLLQVKQTFSTAYHPQTIGSLERNHRCLNEYLRNFVNEHQSDWDDWLQ
FT                 FYAFTYNTSPHTDHGLTPYELVFGVKARVPHETYTDRIDPVYNFDLYSKEL
FT                 RYKLQKSHEIVKQKLLEQKQIRKEINDRSINPLQIKIGDIVYLQKENRRKL
FT                 DSFYSGPYKVKSITEPNCEIINLQTNQLSLVHKNRLIKS"
XX
SQ   Sequence 6062 BP; 2307 A; 955 C; 1034 G; 1766 T; 0 other;
     gatggcgacc ggactggttg acactttgtg aaatattcac agtcaacaaa gttttagtgg        60
     aaaatcagac aaagttttag tggaaaaact gacaaagtct tagtggaaaa tcagacaaag       120
     ttttagtgga aaaacagtga tattataagt gataatgggc tttttcagta acgatgagat       180
     tgttgccaat gcatccacgc ccgagaacac agtaattgca tctacactcg tagtgattgt       240
     ggcagtttta attcttttcg tcataatgag gatgtacaca aagtacatgc aaggaaaagt       300
     gaaagaagaa gcgaggagag aagtacaatt aagtaacctc cgcacagttt gaaaaggtta       360
     aaaggtgatt acgaacaaaa cattcttggt tccagtacag tatgtgtgca aatgaaaatc       420
     taataccgcc gtacagtgca caattatgtg agcattttga gagttcacgg aaaaagttat       480
     ttcagaaaag tggaaaagaa tgactttaca tggttcaagg tgaaattgcg agtcgtgtaa       540
     atttgagatt ttttttgcgg tggagcagtg gtgcaacaat tcaacgtaca gggatggtgc       600
     cagtgtccag tgattctagg cagcttaata agaagatgat gcctgcttgc tgccgcggag       660
     attcgtggtt gcggaatgcg gaccagttcg tacgtaagat gattccggct taccgtcgct       720
     gaggtttgta gtcgcggacc agtcgactag atgaggtcag tgtatctatt tctctacgtg       780
     caattacatc actattacat caccatcata tactgattta ggaaaaatta ttatgtaaca       840
     catagcaagc atcacaaatt tattgttatt ttagtaattt catttatagt taataatttc       900
     caaagattta ataatcttga atttcaaatg agtgaatatg aaaaattaaa acatttatat       960
     aattatataa aaaaatcaat taacactcct ctcacagaga acaccctgag agagaaatca      1020
     gattcttgta aggaaattta tgaaaatttg caaatttatt ttagtgaaaa ctctgtggat      1080
     gaaattttaa taagtaatgc aaaaaagtgg tatttagaaa taaatcaagt tttaaaagcc      1140
     aaattagata atttaaacac caaaaaccag ttggacgaaa ctacgatcag tatggtgcaa      1200
     ccggaagtgg aacgtcagtt tgacgttaaa caagcaacag cgctagtgca gccctatgat      1260
     ggtagtgcgg ctggtttgga atcgtttatc gattctgtaa attttttaaa agaattgatt      1320
     caacctaacc atacggcaat ggccgtaaaa ttccttaaaa cacgtttaac aggaaaagct      1380
     cgctgtggct ttccagatac gatagtaaca attgatgcat taattgagca cattaaaata      1440
     aagtgtcaag atactttaac accagatctg attgttgcaa aattaaatgc aacaaaacag      1500
     agagggcaaa tattaaattt ctgtgaagag attgaaaatc tctgtagcaa actcgaaaat      1560
     agttacattt ctcaaaaggt cccggaaaat gtagcaaagg caatgaccac aaaagcaggc      1620
     gtaaatgctc tcattaatgg cattaacgct agcgaaacta aactaatcct aaaagctggc      1680
     aatttctctt cgattagaga agccttgcaa aaagcacaag agagtgctac tgataataca      1740
     tcatcgcaag ttttcaattt gcggaataaa caatttaacc caaatgaaag gaaaatgaat      1800
     ttccgaggta atggtttcaa cagaaaccga aattttggaa attgctatag aggaggtttt      1860
     tctcaaagac cccaaaacaa ttattatcat aactcttcgc gtggaagata ccaacgtggt      1920
     ggttaccata acggatacaa taatcgtgga agatttaatg ataatcgtcc acgatatgac      1980
     aaccctaatc gagtatatgt ggcaaatgtg gatcaaccgt acggtccacc acaaaaccag      2040
     aaccgcgatg ctccaaacag agctgctccc caacaacaac aacaacaaca aagtcaaaga      2100
     aattttttag gtcagtgtta accataaacc tttctgcttc taattttatc gagattggag      2160
     tagaaatggc aaattcagtt tgtactttac ttgtagattc cggtgcggac atttctatat      2220
     ttaaaactga caaaatttta acaaatcaca atataaacta caaagttaaa acaagaatta      2280
     caggcattac agaaggagaa attgaaacaa tggcaataac agagacagtg ttgaattttg      2340
     gaaatgggat aagagttaat cattcatttc atttagttga tgcgaatttt ccgattttaa      2400
     cagatggtat tttaggaaga gattttttgt ctctttttag atgcaatatt gattacgaat      2460
     cttggctttt gaattttaat attgataata tagctgtatc tgttccaatc caagatacag      2520
     taaatgagaa ttacataatt ccgcagagat gtgaagtgat tcggaagatc aaagatttaa      2580
     aaatcacgga agacatggtt ttattttcta aggaaattaa gcctggtctt ttctgtggta      2640
     atgcaataat ttcaccaacc tgtcagtatg taaaatttat gaatactaca tcacgaccca      2700
     tcaatgtttc aaatgttgac ctagaattta tgttagaacc attaacccgt tatcaaatat      2760
     taaatactag aaaaaataat aaacccgatg acacacagaa aagaaataat gaaattttga      2820
     aggaagttga cttaacaaat gttccagatt atgcaaaaaa tgatttaaaa caattaatta      2880
     caaaatatac agatattttt tcactacccg atgaaccagt aactacaaac aatttttacg      2940
     aacagaccat taatttgaat gatccagttc caacttatat accaaattat aaaactattc      3000
     attctcaaag taatgaaata caatcccaag ttaataaaat gttgaaggat aatattattg      3060
     aaccctcagt atcctcatat aatagtccaa tactcttggt tccgaagaaa tcaacagatg      3120
     ataagaaaaa atggcgtctt gtcatagatt ttagacaact caacaaaaag attttaagtg      3180
     acaaatttcc cttaccaaga attgattcca tattagatca gcttggtaga gcgaagtatt      3240
     tttcaacttt agatttaatg tcgggatttc accaaatccc attggatgaa aattcgaaaa      3300
     aatatacagc tttttcgacc caatcaggtc attaccagtt tacaagattg ccgtttggac      3360
     taaacattag cccaaacagc tttcaaagga tgatgacaat tgcaatgtct gggttgacgc      3420
     cagaactagc atttgtttac atcgatgata taattgttgt aggttgttca atgcaacacc      3480
     atttacacaa cttatcagtt gtttttgaaa gaattcgaaa atataattta aaattaaatt      3540
     tgtcaaaatg caaatttttt aatacagaag taacgtactt agggcacaga ataaccgata      3600
     gaggtatttt gcctgacagt agtaaatatg ataccgtaaa gaactatcca gttcccaaga      3660
     acagtgacga agtcagaagg tttgtagctt tttgtaacta ctaccggaaa ttcgtcccaa      3720
     attttgcaac aattgcatac ccgttgaatc aattgttgag aaaaaacata aaatttgaat      3780
     ggtcatcaaa atgtgaagat gcttttaatg ctctaaaatc atttttgatg tcaccaaaac      3840
     tattacaata tccagatttt aagcaaacat ttatattgac taccgacgca tcagatgtag      3900
     gatgtggtgc ggtattatca cagaatattg atggcaacga tttacccata gcgtttgcca      3960
     gtaaaagttt tacgcctgga gaaaagaata aatcagtaat tttgaaggaa ttgacagcaa      4020
     tacattgggc tatcgattac ttcaaagctt atttgtatgg acgtaaattt gtaattcgta      4080
     cagatcatcg tccattggta tttttattta atatgaaaaa cccaacatcc aaactgaccc      4140
     ggatgagatt agatttggaa gatttcgatt ttactattga atatattcaa ggtaaaacaa      4200
     atgttactgc cgacgcgtta tcacgtatag taacgacgtc agatgaatta aaatctaaaa      4260
     gtatatttac tgttaataca cgagccatga caaaaagaaa actgaaagag tctaaacgta      4320
     gtcaggaact acctgatgaa aacaaaagtc aaaacaatgc cgttaataat aagcctgatc      4380
     aacttgttat ttatacgaca gagaacccga ctgaaactag aaaactacca aaacttcgaa      4440
     gtgcaatgga aaatgagaat ttaattttta cattacatga agcatcacaa aagaataaaa      4500
     taataatacg aattacaaca caactgcgaa gtataagaca aacattagtg tttgcacttt      4560
     cagtgttaga aaaagaaatg caaatgaaga gaattacaaa aatcgcgcta tcgagtcatg      4620
     actgtatttt tgaatgggta cccaaagaaa catttaaaga actagttttg aaatctataa      4680
     aaaatttgca gataataata tataatccac ccaagttcat tagtgatctt gatgagatta      4740
     aaagaatact tgaaaattac catcaaacac cgactggagg acatataggt cagcacagac      4800
     tatacctcaa gttgagagaa atttataatt ggacaaatat gaaaagttca atagcacaat      4860
     ttataaaggc ctgtgaattg tgtaaactga acaagattac caaacataca aaggaaaaat      4920
     taacaattac aaatacaccg tctaaaccgt ttgaagtggt atctattgat actataggac      4980
     cacttcccaa atcaaacaat aataatagat atgctgtaac gatacagtgt gaattaacta      5040
     aatatgtagt tttagtccct attccaacaa aagaagcaaa cgtaattgct aaatctttag      5100
     ttgaaaattt tattttaata tatggaaaat tcttagagtt aaaatcggat caaggaactg      5160
     aatacaaaaa tgaagtcctt gatcaaattt gtaaactatt acaggttaag caaacttttt      5220
     ctacagccta tcatcctcaa acgattggtt cgttggaaag aaatcacagg tgtttaaatg      5280
     aatacctgcg aaattttgtc aacgaacatc agtcagattg ggatgattgg ttacaatttt      5340
     atgcatttac atataatact agcccacaca ctgatcatgg tttaacacca tatgaattgg      5400
     tttttggagt taaagcaaga gtaccacacg aaacatacac agatagaatt gatcctgttt      5460
     ataattttga tctctatagt aaagaattaa gatacaaact tcaaaagtca catgaaatag      5520
     ttaaacaaaa attacttgaa caaaaacaaa tacgaaagga aataaatgat cgttcgataa      5580
     acccattaca aatcaagata ggagatatag tttatttgca aaaagaaaac agacgtaaat      5640
     tagattcatt ttattcaggt ccatataaag taaaatcaat aacagaacca aattgtgaga      5700
     tcatcaattt acaaacaaat caattatctt tagttcataa aaataggtta attaaatcct      5760
     aggaagtgtt agttttaaaa ccgagcctaa tctcataaaa aaaaataatg aaaatcaaaa      5820
     aacagtaaaa aaatgagata ggtcaaaatt cttagcgcaa gctgagaagt gagaaattcg      5880
     gatatttaat taagcatttt ttcttcttgt ttttgaatac atttaccaat attctatcaa      5940
     aataatataa tctaacattg taaaggagat tgaaacaaca tttttttttt catttatatc      6000
     acatatgttg acaagaattg aatgtcttca ctacgttacg tcattcaccc aaagggggat      6060
     gg                                                                     6062
//
ID   Gypsy-597_AA-LTR repbase;    DNA;    INV; 563 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-597_AA_;
KW   Ty3_gypsy_Ele58; Gypsy-597_AA-I; Gypsy-597_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-563
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 563 BP; 172 A; 119 C; 87 G; 185 T; 0 other;
     tgtagcatgt ttattttaac gcatttcaaa aagatcataa tttaaggatc atgacagctt        60
     acattgctca acttctagga aaacattccc acacgcaagt tagctgtact tgcatcttca       120
     aagcatttgg tacatgtcat ttttcaacta atcgactagg tttcattttt cacaacccat       180
     cgattatcca cataccacac aacttgagca acttattttg ttctcatgac gaagcgcatt       240
     catgctgaga agcttcatat ttcaattccc ataaagacaa tttctacttt tgcctttgca       300
     ctgatttgac ccgacagtgc aacggcccag cgaacacaca tgtaaacgtt tacccatccg       360
     tttggtaaac gccttctttt aaatttgtat tctatgattg gttaattgat attggttgtt       420
     tcagccttct cgtaatatag tggagtacta gattaagctc gaggttagct gtaagattga       480
     cttcaaaata aaagacagaa cataatcaac aaccatagag tcaagttgac taattccgat       540
     atgtccttta tggtatcata cca                                               563
//
ID   Gypsy-598_AA-I repbase;    DNA;    INV; 7444 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-598_AA_;
KW   Gypsy-598_AA-LTR; Ty3_gypsy_Ele194; Gypsy-598_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7444
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [2877-3380] - Reverse transcriptase
CC   Positions [4446-4925] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           220..2067
FT                 /product="Gypsy-598_AA-I_1p"
FT                 /translation="MSRVFPRAEDLNQEELDFELQIRNEPEEVYKLDLTAK
FT                 QRHLRNLFKNDQKDGRLYQSPFSINDEYAHVEGRILNLEKALEKKVESKYE
FT                 SRVLHYWYRVKWIHVEGEEEKKKKRELVQAIERIMMKYQFGPPQSPTVERQ
FT                 SQTELGRMESVLGGNISNPFEFPKVGVPARNGTGTIPKITLSEIKDQNTFC
FT                 ETGAEGLRHGTDDSTRISVTRKEWEDMQAAITELAAKLAQSEALRQQNDFS
FT                 NTERISQYRNVPQRNPVPTRTVIDRSRRTADSYQASIEDEDSEEDVRRPQP
FT                 VWRSRHWRSSHDSESGYNNGWNNDAYQSGWRHPGGRYAGQGRVEKWKLRFT
FT                 GELRSTMSVENFLYKAKKLAEREGVAKHILLRDIHMLLEGAASDWFFTFVD
FT                 DLNTWEEFETAISYRFGNPNKDQGIRTKIQERKQQRGEPFIAFVTEIEKMN
FT                 RLLSKPLSNRRKFEVIWDNMRQHYRSKISIVEIKDLQQLIKLNYRIDAADP
FT                 QLQSQNMEGTSGYQRRPINQLEAEGSDYDSDQSINAINTRTNNNFARANRP
FT                 SMEQNARPTQNATTPASCWNCQGQGHTWRQCTRPRVIFCYGCGNLGRTIRS
FT                 CERCSRPSNAQNSSQGNE"
FT   CDS           2481..5318
FT                 /product="Gypsy-598_AA-I_2p"
FT                 /translation="MIDVGQGFEEVETVGQTNSLPTCFTIEPSGEPLSADE
FT                 LEEDETLDIPVYEGPISSVPDPDAIETEHELSEEERKQLTGVIRNFELTSD
FT                 GKLGRTHLITHEIVLQEGAKPRNPPMYKCSPYVQQAINDEVERFKRLDAIE
FT                 ECYSEWTNPLVPVLKKNGKVRVCLDSRKINKLTVKDTYPMRNMQDIFRRLG
FT                 KAKFFSVIDLKDAYFQIPLKEECRNFTAFRTTEGVFRFKVLPFGLTNAPFT
FT                 MSRLMDKALGFDLEPFVFVYLDDIVIASNTFKEHLRLLRIVAERLKKAGLT
FT                 ISLEKSRFCRKQVMYLGYLLNENGVAIDTARIQPILDYAQPKTQEDIRRLM
FT                 GLAGFYQRFIKNYSRITAPITDLLTKENKKFVWTKEAEIAFRELKSVLTSA
FT                 PILGNPDFTKPFIIESDASDRAIGAALVQEQDGETRVISYFSKKLNRTQRR
FT                 YAAVEKECLGVLSAIQHFRHYVEGTKFRVITDARSLLWLFNVGTETGNAKL
FT                 LRWALRIQAYDFDLEYRKGKANITADCLSRSIEVDTVVISQPDAEQEELME
FT                 RIQSNPNKFKDFRIVDGRVFRFVKTGNRMSDPRFAWKCYPPRTERCDIIRQ
FT                 EHEKAHFGFEKTLAAIKNRYYWPRMNIEIRKFCRECLKCQVSKAGNVNVTP
FT                 PMGSQKPVEYPWQFVTLDYVGPLPPSGKNRNTCLLVATDVFSKFVLIQPFR
FT                 EAKAHSLVDFVENMIFRLFGVPEIILTDNGSQFVSREFKKLLEDNHVSHWL
FT                 TPAYHPQVNNTERVNRVIVTAIRATLKKSHNHWADDIQQIADAIRTSVHES
FT                 TKFTPYFVVFGRQKVSDGREYSKIRDNHVPPEEDEQQIKNKRKELFDEIKT
FT                 NLKAAYAKHARSYNLRSNVQCPTYIVGEKVLKQTFDQSDKGKGFCKKLAPK
FT                 YEPAIVRKVLGANTYELEDLTGKRIGVFFANKLKRMLPQSGT"
XX
SQ   Sequence 7444 BP; 2240 A; 1534 C; 1708 G; 1962 T; 0 other;
     tttggcgccc aacaatacaa ggctttttct tcgctgttta ttaaaactct ttttttgttg        60
     tttgttggat tttcttgaat tctgtaaata tttatttttt tcgtatcgtt tttttttcat       120
     ataaatacat tttcttagtt tcttattacc ttatttgaat tctatatatt ttgttcgcat       180
     tttcattaaa tttaagctaa atttttaaaa taattcacga tgagtcgtgt attccctcga       240
     gcggaagatt tgaatcagga ggagctggat tttgagctcc aaatccgcaa tgaacctgaa       300
     gaagtctata aacttgatct aactgcaaag caaagacatt tacgaaatct gttcaaaaat       360
     gatcaaaaag atggacgttt gtaccaatcg ccattcagca ttaatgacga gtatgcacac       420
     gttgagggaa gaattttgaa tttagaaaaa gcgttggaaa agaaagtgga atctaaatac       480
     gagtcaagag tactgcacta ttggtacagg gtaaaatgga ttcatgttga gggagaggaa       540
     gagaaaaaga agaagaggga gttggttcag gctattgaga gaataatgat gaaatatcag       600
     tttgggccac cgcaatcacc gacagtcgaa aggcagagtc aaacagaact aggtcgtatg       660
     gaatctgtac ttggagggaa tataagcaac ccattcgagt tccctaaggt tggcgttccc       720
     gcgaggaatg ggactggtac tattcctaaa atcacattga gcgagatcaa ggatcagaat       780
     accttctgcg agaccggggc cgaaggactg cgacatggca cagacgattc aacacgtatc       840
     tcggtcacac gtaaggagtg ggaggatatg caggcagcga taacggaatt ggcggccaaa       900
     ctagcgcaga gtgaggcact gagacagcaa aacgattttt cgaatacgga acgaataagc       960
     cagtatcgaa acgtaccaca gaggaatccg gtacctacta gaaccgtaat cgaccgtagt      1020
     agacgtacag cagacagcta ccaggccagt atcgaggacg aagacagtga ggaggacgta      1080
     agaagaccac aaccggtttg gaggagtagg cattggcgga gcagccatga ttcggaaagc      1140
     gggtacaata acggttggaa caacgacgct taccaatcgg gttggaggca tccaggtgga      1200
     agatacgcag gccaaggacg agtggagaaa tggaaattac gattcactgg cgaattgaga      1260
     tcgacaatgt cagtggagaa ttttctgtat aaggcgaaaa aattggccga gagggaaggg      1320
     gtggccaaac acatcctact gcgtgacatc cacatgcttt tggaaggggc cgcctctgac      1380
     tggtttttca cctttgtcga tgaccttaac acgtgggaag agtttgagac agccatttcc      1440
     tacagatttg gaaacccaaa taaggatcag ggcatccgaa ctaaaataca agagcggaaa      1500
     caacaacgtg gcgaaccgtt catcgcgttt gtaacggaaa tcgaaaagat gaatcgttta      1560
     ttgtccaaac cactctcaaa tcgaaggaag tttgaggtga tttgggacaa tatgaggcaa      1620
     cactataggt ccaaaatatc gatcgtggaa attaaggacc tacagcaact gataaagctt      1680
     aactaccgaa tagatgcagc cgacccacaa ttgcagtcgc agaatatgga aggcacatct      1740
     ggttatcaac gacgtccaat aaaccagcta gaggcagaag gaagcgacta cgatagtgac      1800
     cagtcaatca acgcaatcaa cactcgaacc aataacaact tcgcaagagc aaatagacca      1860
     tcgatggagc agaatgcaag acctacacag aatgcgacaa caccagcgag ctgctggaac      1920
     tgccaaggac aaggtcatac atggagacag tgtacacggc caagagttat tttctgttac      1980
     ggttgtggaa acttgggcag aacgattcga agctgtgagc gttgctccag accctcgaat      2040
     gcccaaaact caagtcaggg aaacgagtaa aggggggcga tggggggaat tcgtcaaacc      2100
     cagcaaaagt aataattccc aaacaacaac caaactacga cccattttct caaatttacc      2160
     acattaaatt taagaggtca aaatgccctc atattaaagt cagggttttc gagttcgaac      2220
     tcgatgcctt actggactcc ggagcgggga ttagcatcct aaactctcta gaagtggtag      2280
     aacgttataa tcttaaaatt caaccaacgg ccatcaaggt ttcaacagct gatggatcag      2340
     tatatagttg cttggggtac gtgaatattc cattcacgta caaaaagttg accaaagtgg      2400
     tacccactct cgtagtacca gagatttcaa ggcatttgat ccttggagta gacttttggg      2460
     aatgttttgg aataaaacct atgatagatg tgggtcaggg gtttgaagaa gttgagacag      2520
     tcggacaaac caacagtttg ccaacgtgct tcaccataga accttccggt gagccgttaa      2580
     gtgctgacga attagaggaa gatgagacac tggatattcc agtatacgaa ggaccgataa      2640
     gttctgtacc agacccagac gctatcgaga ccgagcatga gttatcagag gaggagagga      2700
     aacagttgac gggtgtcata aggaatttcg aactgacatc ggacgggaag ctaggaagaa      2760
     cacatctaat aacccacgag attgtgctcc aggagggagc taaaccgcgt aatccgccaa      2820
     tgtataagtg ttctccctac gttcagcaag ccatcaatga tgaggttgag aggttcaaac      2880
     ggttggatgc aatagaggaa tgctatagtg agtggaccaa cccgcttgta ccggtgctca      2940
     agaaaaacgg gaaggtgagg gtctgcttgg actcacgaaa aattaacaag ttaacggtca      3000
     aggacaccta cccaatgcgt aatatgcaag acatattccg tcgattgggt aaggcaaagt      3060
     tcttttcagt aattgacctt aaggacgcct actttcagat ccctctgaaa gaggaatgtc      3120
     gaaacttcac tgcattccgg acaaccgaag gagttttccg ttttaaggtg cttccgttcg      3180
     gccttacgaa tgcgccgttc acaatgtcac gtctgatgga caaagccttg gggttcgacc      3240
     tcgaaccatt cgtctttgtg tatctggatg acattgtcat cgcgtccaat acgttcaagg      3300
     aacacctccg gctattgcgt atcgtagcag aaaggcttaa gaaagccgga ctcacgatct      3360
     cgctggaaaa gtcaagattc tgccggaaac aggtaatgta cctcggctat cttctcaacg      3420
     aaaatggagt ggcaattgac acggctcgaa ttcagccaat tctagattac gcccaaccaa      3480
     aaactcaaga agacattcgc cgcctcatgg gattggcagg cttttatcaa agatttataa      3540
     agaattatag tagaattacg gcaccaatca cagatctcct cacgaaggag aacaaaaagt      3600
     ttgtctggac taaagaagcg gaaattgcat tccgagaact gaaatctgtc ctaacttcag      3660
     caccgattct agggaacccc gatttcacaa aaccgttcat catcgaatcg gacgcttcag      3720
     atcgggccat tggagcggcc cttgtccagg agcaggacgg agaaacgcga gtaattagct      3780
     actttagcaa aaaactcaac cgtacacaac gaagatacgc ggcggttgaa aaggaatgtt      3840
     taggggtact gtccgcaatc caacatttcc gacattatgt ggagggaacg aagtttcgag      3900
     taatcacaga cgcgagaagc ctcctgtggc tttttaacgt cgggacagag accggaaatg      3960
     caaagctgtt gagatgggca ctacgaatcc aagcctatga ttttgatctg gaataccgga      4020
     aaggtaaggc aaatattacc gcggactgtc tatcgaggtc gattgaagtg gacacggtgg      4080
     taatctccca gccagacgct gaacaagagg aactgatgga acgaattcag tccaatccta      4140
     acaagttcaa agactttcgc atagtggatg gcagagtttt tcgattcgtc aaaacaggaa      4200
     accggatgag tgacccacga ttcgcatgga aatgctatcc tccgagaacc gaacgttgcg      4260
     atataatccg ccaggaacac gagaaggcac attttggttt cgaaaaaaca ctggctgcaa      4320
     ttaaaaatcg ttactactgg ccacgaatga acattgaaat tcggaaattt tgtcgagaat      4380
     gtctcaaatg ccaagttagt aaagccggaa atgtcaacgt aacgccacct atgggttctc      4440
     aaaaaccggt ggaatacccg tggcaattcg ttacactaga ctatgtagga ccgttacctc      4500
     catcgggtaa gaatagaaac acctgcttac tagtagccac agacgtcttc agtaagttcg      4560
     tcttgattca accgtttcgc gaagccaaag ctcactcttt ggtagacttc gtggaaaata      4620
     tgattttccg tctatttggg gtgcccgaaa ttatattaac cgacaatgga tctcagtttg      4680
     tctcgcggga attcaagaaa ctgctcgaag acaatcatgt gtcccattgg ctcacacctg      4740
     cgtatcaccc acaagtgaat aatacggaaa gagtgaaccg ggtaatcgtt acggccatac      4800
     gcgcgaccct aaagaagtcc cacaaccatt gggcagacga cattcaacaa atagcggacg      4860
     caatcagaac atcggttcac gagtcaacca aattcacgcc ctacttcgta gtttttggtc      4920
     gacaaaaggt ctcagacggt agagagtatt ctaagatccg cgacaatcac gtaccacctg      4980
     aagaagacga acagcagatt aaaaacaagc ggaaagagtt gttcgatgaa attaaaacga      5040
     acctaaaagc cgcctacgct aagcatgcta gaagctataa tcttcgttct aatgttcaat      5100
     gccctactta cattgtcggt gaaaaagtcc taaagcagac gttcgaccag tcagataaag      5160
     ggaagggatt ttgtaagaag ctggccccga aatatgagcc agctatagtt cgaaaagtct      5220
     tgggagccaa tacctatgag ctagaagacc tgactgggaa acggatagga gtctttttcg      5280
     cgaataagct gaagcgaatg cttccgcagt ctgggacata gtcagagact gggttttcaa      5340
     gctatgcaac tcttaatgag taactataag taccaaaaaa cacctatatg gtcattacgt      5400
     atacggacag tttcgacgga ctcgcctagg gaaaatctac ggatggaatc tacgctgagg      5460
     gtaccgaaac tgagcctaaa caatatctaa acaacacctc aagctatgaa caactttgga      5520
     aagtgactaa aaaaatcaat aatcgattgc aaaaacacct aaaagggcag aaactaattg      5580
     aggaggactc aaataccgag aaagatacga ccaaacgaga cgctcaatca ctgagcttgt      5640
     aaatacctgt aaatattagt tgttagtttc ctaatgccct atcccttaat cactagaatt      5700
     agtacttaaa ctagattagt agataaacat taattactca cggttcaatt cgtaattgat      5760
     tagtcctttt gttgaattgg tcgtcaagtt gtaaatattc gcttttttct ccttatcgtc      5820
     ctttttgtaa atatcctcgt tgttcatcgt agccgaatcg cgttaatata ttgaattagt      5880
     tgaatttagt cgccaagttg ttcatatcct ggttttcctc agcattatcc gatgaattcc      5940
     aatccgtttc tcagattagt ttcctttccc gattagtcca ccttgttgtt tttccttgct      6000
     tctactatat cgatccaaat cgcgttgcaa tcccgtatcc atgcacagtt ctgctttacc      6060
     gatccgtcct tgtttatttt tagttcctct ccaattctcc tttaccgatc caacgtagtt      6120
     aatcaacatt cctccatttc cttcctcatc catagttttc gtgtccggtt actttctcct      6180
     tattcccgtc atccgtcctt tgttatttca atcgcacagc tccggtattt ctccttaatc      6240
     cgcatctgac tggtccggtc gtctgctttc cgatggcggc tggtccgaac tttcacctgc      6300
     gaagaaaaga aacaaaacaa accaacttac atcgatagct cggaacgatg attaatttta      6360
     ctctcctcaa gtagtccata gcccggagtc ttcaaatttc cactcgtaca attcaatttt      6420
     ccagcgcaac actttttttt tcacgtttgt gcaaaagttt tcaccgcact tcccactcgc      6480
     gggttgtttt ttcttctcgt ccatcacttt gacagttcgt ttgagggtga tgacattgga      6540
     tgtttggtag accggttatg cgggtgaacg tcacgtatgt agttggattc tgcacttcac      6600
     agtgtcggag ttcatttggt atgattgcga tgggtgtatg gatgtgtagt agcttgtgtt      6660
     tatttaattt ctgcgagatt tttgttagtc agacgatgta ttggcgctta aaaaaatctc      6720
     gtaagaggct tatttaagat ttgcgtcgca atgagtgtaa atcgcggttt ctgttccgtg      6780
     gcaacgaatt gcgattcgga tcggcttatt ttgtgaggaa ggttaaaatc tcgttttctc      6840
     gcttcgggct ggggtagaga ttgttgactg gactcacggt tacgtccact taggtggaga      6900
     ctttcgtaag tgcgtcttca tatatcggca aaatgtcctg gttttagaag atgtacttcg      6960
     gtttatgtta ttttaagctt gctcagagtt ttagtcgact actctgagtt gaagctgagt      7020
     ttttcgtttg tgaatttatg tttgaatgaa tggagggggg aaagtatgag tgtggtcatc      7080
     atcaacaatt attcttttct ttgatcaaga taggttttca gtaaaaaaaa ttagttcttt      7140
     gcgatcggat ctctttatat acttctttag taaggttata aattgtaatg gcatggcagt      7200
     aatgattttt cgctggagac cggagaccgt aggtcgctga tggtcagtgg cagatgtggt      7260
     ttgttatgag ctgcatactg taaatagaga tggagttgaa ttcgttcaat gatgaaacta      7320
     tatgaccccg aaaattgaag catgtcatcg ccatgactat ttagcaagcc tacgaaaatt      7380
     tgattggctt ttgttagctt gatagcatcg ccaatcaaat tttcgtaaat ttaggaggga      7440
     gtga                                                                   7444
//
ID   Gypsy-598_AA-LTR repbase;    DNA;    INV; 2157 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-598_AA_;
KW   Ty3_gypsy_Ele194; Gypsy-598_AA-I; Gypsy-598_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2157
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2157 BP; 580 A; 484 C; 547 G; 528 T; 18 other;
     tgtaacgaac tttcagttcg atacattttg tgtaaatatg tagatataaa tttagcttaa        60
     gtwaatgaat tawtaaaatg aaattgaatt tatattaaag tttccccgtc acatacaccg       120
     cagtttgaat tccctataaa agctctttta gctataaatc caggcgcgct cacacagaaa       180
     cgagcaagcg aattctccaa gaataagcgg atgagtacca tagaagattg ggaccatgtg       240
     agaagcatag gcacgcgcat atgtccctaa caatgtagcg tcggatggtg gccatcgacc       300
     tctgggaaac ccctttcagg atwtattgac cctttggctc gtaattgaga gaatttcggt       360
     taggctcggt tggtgacatt cgttgcaacc cgaatgatct ttctctttgc cacaatagac       420
     tgttagtcgg ggcaaaggca atttagagac tcgggaggtc aawtccggta gcgaagackt       480
     tcagaatwat cgcaccttat ctgagggttt ctggctgtta cwcgttcact tcgwtctgta       540
     cagtggaaga ggcaggagta gtccagtgtt agttscgcgt cgtgaggtga ttttgcaggt       600
     ggaaaatcaa gtgacaagat atctccttga aattactaat ttaagttcgt ctctctctta       660
     gtgaaatagt tgttaggaaa tcgtcacgca aaacggcgat tgcgtgcgta gtaggaagtg       720
     tgcgagtgag gataaagaat tcagmaggta aatcacgtgc ttctttggtg tgataatcca       780
     agcttttaac gcgtcggaaa ttggcattta tttcaattag atttgtggcg agcgtgccaa       840
     gcccgccacc tcacaatagt tcaggaaact attcctgacc ccactctgca gcttcgaaga       900
     agcccggtgg tacacgtggc cggaaggggg ccgcgtccgt caatttcgcg ccccggacag       960
     ggccaaggca gcagcatatc ggttttcawc aagagtcagt ggagccagca accagcgttt      1020
     cccgtttcgg tgacgaccgt aagtacaacg gcagtacccc gttgaagccc acaaatcatc      1080
     ggtgaggcgc cgtcggcgca tgaagcagtg aggcgtagaa gtcggaagga gcgcgcatcg      1140
     cgcgcgcttt gaaggagccg ggcatcgcag agatgtgccg tgactaagcg ttaacccacc      1200
     aaaccacccg ttgaacgagc gatcagtgtc aaccgatgcc gtaaccgtcg acacggatca      1260
     agccacccac cgatcagcag cgccccaatc acaccaacaa gaccccagcg tcgtcgtccg      1320
     gcgaccaccc actttcgtcc tgctgatatg gtaccgtaag taaatgcatg caaatcagtg      1380
     aaagtcccat gcgcatggtg tagagatttt tttgcccgct cccgattgat ggttggagac      1440
     gcgtggcggc ggctaagctt ttttgtcgga cactagccgt tcccccaatg tgaatgccca      1500
     caccgcacaa aagcacgtga agagatagta gaawkagagg tagawgawga aatggaaatg      1560
     aacttgtaaa tagctagagt aaggaaggaa gagagaatgt cggtaaagta ggcctamgaa      1620
     ctaaatatag aaatgaactc gaataatgaa gttgcgttac gtttkgaata aatkcattag      1680
     agtaccacag acaaaccgac ctgtgttgaa gttattagcg aacgagaaga ggtaatgtag      1740
     gggaggtttc atgtcactcg ggttcgttta gtagttcctt gttaatttac tttattttac      1800
     tggggaggtt ggctccgaat ccaaccaagg aacactctct agtctttcgg gttcagtttg      1860
     aggtttacgt gtacagccag ccagtgatga gaataggtgc gaacgtagtc tggactatcg      1920
     gctaggtttt cttttctcgg actaacagtc tagggtaatc taaagaggag tcttcttgtc      1980
     gcaacaacgt agccaaccgt gcttcgtgct ttccttccac tattggaccc caaaaccctt      2040
     tcccttgaga ggtcttaggc cgggcaaccc tgaaaacagg tggatggtct ccaaccggag      2100
     tggcgctcaa gccatccgct aatcttaccg gaaagcacgt tcggacgtcc ggttaca         2157
//
ID   Gypsy-599_AA-I repbase;    DNA;    INV; 4376 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-599_AA_;
KW   Gypsy-599_AA-LTR; Ty3_gypsy_Ele67; Gypsy-599_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4376
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3329-3793] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..4363
FT                 /product="Gypsy-599_AA-I_1p"
FT                 /translation="MSQPQAPSSLAGSGEQPFKDTILQILSNQQALMTKLS
FT                 QHVAAIEGNIQNANRNELILDSLATNITEFAYDLEKGYSFDAWFSRYADLF
FT                 EKDAAQLEDDAKVRLLLRKLSPSAHERYTSFILPKLSKEFSFEETVAKLRT
FT                 IFGTPVSTFHRRYQCLQTTKDEDEDFISYSCKVNKACVDFKLQELKEDQFK
FT                 CLIFVCGLKSPKDSDIRMRLLSRMNETSDMTLEKIVEECKSLINLKQDTVL
FT                 IGGKPPTPAVAATNAVRTHSQPNRKEKSNRSKDQAPKTPCWSCGGMHFANH
FT                 CNFKDHKCRDCGRTGHKEGYCSCFSSKSRPKSGKGKPANRNKPSSKIVVVK
FT                 NVTRSRRYVETTINGVPVNLQLDSGSDITIISRQNWLKIGAPKTSPPDCEV
FT                 QTASGDKLGIAAMFRACISISGDQREGNCYVCRTNLSLNVLGSDLLDKFGL
FT                 WDVPFSSFCKLVDAKQEDHQVAALKAKYPTVFTDQLGLCSKMQVHLSLKKD
FT                 VQPVFKPKRPVSYNMEAVVEDELKRLQDKGIITPITYADWAAPIVVVRKPD
FT                 RTVRICADFSTGLNNALEANNYPLPLPEDIFNRMANCTVFSHIDLSDAYLQ
FT                 VQVDDESRKLININTHKGLYQFNRLSPGIKSAPGAFQQIMDAMLAGLDCTC
FT                 PYLDDVLVGGRTEEEHRKNLYKVLERLQEYGFTVKIDKCRFFMRQVNYLGQ
FT                 LLDKEGIRPDPEKVKAIVNMPPPSDVSTLRSYLGAINYYGKYIREMRKLRH
FT                 PLDELLKQGTSFEWTDECQRSFDRFKEILQSPLMLTHYNPRLDIVVSADAS
FT                 NVGIGARIAHRFPDGSEKAVYHASRSLTPAESRYSQIEKEALGLVYAVTKF
FT                 HRMIYGRRFTLQTDHKPLLAIFGSKQGIPPYTANRLQRWALTMLLYDFQIE
FT                 YISTDHFGHADILSRLINSHIKPDEDFVIASIEIEKVICNVVGQSIEHLPV
FT                 SYKMIAEETAQDEALRKVTSFIRKGWPTEATSEHSSVQQFFARRDSLYEAQ
FT                 KVLMYGDRVVIPKKLQQKVLQQLHKGHPGIERMRSLARNFVYWPNIDDHVT
FT                 ALVRNCHECAAAAKTDTKTKLQSWPVPEKPWQRVHADFAGPVDDTYYLLLV
FT                 DALSKWPEVVPTKRITTAATIAILRKIFSRFGMPEVLVSDNGAQLTSDAFE
FT                 RFCESNGIMHLKIAPFHPQSNGLAERFVDTFKRTIKKIQAGGEDIDQAIDT
FT                 FLLCYRSTPSRNAPGGKSPAEILFGKPLRTSFELMKPPSKFFKDVNSKQDS
FT                 QYNEKHGAKAKYFDVKEQVYAQVHHGNEWSWIPGEVVERIGQVMYNIWLPD
FT                 RKRLIRCHSNQLRNRYGSKSNPEVTNPDVPLDILLDTWSLNPTNSEAAVEA
FT                 VEPPTEPDGLNELQLEFLRNLMQPDQQQRRQRTPVRQPELDEVIQRRSSRQ
FT                 RRAPIRYEPYQLY"
XX
SQ   Sequence 4376 BP; 1280 A; 1061 C; 1050 G; 985 T; 0 other;
     aagtggcgac gagtctgcgg aagttcgcgg agtaccgaat ttcgggtcga aagtatcgcg        60
     ccgccgaaaa ccgcgtgtga gaatgtcgca gccacaggcg ccatcttcgt tggccggcag       120
     tggtgaacaa ccattcaaag acacaatttt gcaaattctc agcaatcagc aggcgctgat       180
     gacaaagctg tcgcagcatg tggcggcaat cgaaggaaat atccaaaacg caaaccgcaa       240
     cgagttgata ttggattcct tagcgacgaa tatcacggaa tttgcatacg accttgaaaa       300
     aggttactcg ttcgatgctt ggttttcacg gtatgcggat ctttttgaga aggatgccgc       360
     ccagctggag gacgatgcca aggtgcgctt gttactgcga aaactgagtc cttctgcgca       420
     cgaacggtac acgtcattca tcctccccaa actgtcgaag gagttttcgt ttgaggaaac       480
     tgtagccaaa ctgaggacca tcttcggtac accggtatct acgttccatc gacgttatca       540
     gtgccttcag acgacgaagg acgaagatga ggattttatc agctactcgt gtaaagtcaa       600
     caaagcatgt gttgatttta agctccaaga gctaaaggaa gatcaattca aatgtcttat       660
     cttcgtatgt gggctcaaat cacctaagga ttcggacata cgaatgcgcc ttctttcgag       720
     aatgaacgag accagcgata tgaccctgga gaaaatcgtc gaagagtgca agagtctgat       780
     caatttgaag caggatacgg tgctcattgg aggaaaaccc cccacgccag ccgtggctgc       840
     aacaaatgcc gttcgaacgc actctcagcc aaatcgaaag gagaaatcaa accgttcaaa       900
     agaccaggca ccgaagacac cgtgttggtc ttgtggtggc atgcactttg ccaaccactg       960
     caacttcaag gatcataagt gtcgagattg cggtagaacg ggccacaagg aaggctattg      1020
     cagctgtttt tcgtcaaaat cacgtccaaa gtcaggaaaa ggaaagccag cgaatcggaa      1080
     caaaccttca agcaagattg tcgtcgtgaa aaacgtcaca cggagcagaa gatacgtcga      1140
     gacaaccatc aacggagttc cggttaacct tcaactagac tccggttctg atatcaccat      1200
     tatatccaga caaaactggc tcaaaatcgg agcaccgaaa acatcgccac cggactgtga      1260
     agttcagacc gcatctggcg ataaattggg aatcgctgct atgttccgtg cctgtatttc      1320
     catcagcggc gatcaaagag aaggtaactg ttacgtatgt agaactaatc tatctcttaa      1380
     cgttctaggc tcagacctac tcgataagtt tgggctgtgg gacgtaccat tctcgtcgtt      1440
     ctgcaagttg gttgacgcca agcaagaaga ccaccaagtc gctgcattga aagccaagta      1500
     cccgaccgtt ttcaccgatc agttggggtt gtgctcaaag atgcaggtgc atttgtcgct      1560
     caaaaaagac gttcaaccgg tattcaagcc aaagcgaccg gtttcgtaca acatggaggc      1620
     cgtcgttgaa gatgaattga aacgcctgca agataaaggt atcatcacgc caataacgta      1680
     cgcagattgg gccgcaccaa ttgtggtggt gcgtaaacca gatcgcaccg ttcgaatttg      1740
     cgccgatttt tccaccggat tgaataatgc acttgaggca aacaattacc cattgcctct      1800
     cccggaggat attttcaatc gaatggctaa ctgtacagtg ttcagccata tcgatttatc      1860
     agatgcgtac cttcaggtcc aggtggatga cgaaagcagg aagttgatca acatcaatac      1920
     gcataagggc ctttaccagt tcaaccggtt atcacccggt atcaaaagcg ccccgggtgc      1980
     attccaacaa attatggatg cgatgttagc tgggctggac tgcacttgcc catacctcga      2040
     cgacgttctc gttgggggtc gcacagagga ggaacatagg aagaacctat ataaagtact      2100
     cgaacgcctt caagaatatg ggttcaccgt taagatcgat aaatgtcgat tcttcatgcg      2160
     ccaagtgaac tatctggggc aacttctaga caaggagggc atccgccctg atcctgaaaa      2220
     ggtgaaagcg atagtgaaca tgccacctcc tagcgatgtc tcgacgctgc ggtcgtactt      2280
     aggtgcgata aattattacg ggaagtatat tcgagaaatg cgaaagcttc gccaccctct      2340
     ggacgaactt ttgaagcaag gaaccagttt cgaatggaca gatgagtgcc aacggtcgtt      2400
     tgatcgattt aaggaaatct tgcaatctcc tctcatgctg acgcactata atcctcgttt      2460
     ggatatagta gtatcagccg acgcatcaaa tgtgggcatt ggcgcccgca tagctcatcg      2520
     atttccagac ggctccgaaa aggctgtgta tcacgcatca agaagcctca caccagcaga      2580
     atcccgatac agccaaattg aaaaggaagc gttgggattg gtttacgcgg tcaccaaatt      2640
     tcatcgaatg atctatggaa gacgcttcac tctccagacc gaccataaac cgctgctggc      2700
     catttttgga tcgaaacaag gtattccacc atacacagcc aaccggctac agagatgggc      2760
     gctcaccatg ttattatacg actttcaaat cgagtatatt tctacggacc attttggtca      2820
     cgcagatatt ctgtcacgcc tgataaattc tcacatcaag ccagatgagg atttcgtaat      2880
     tgcgtccatc gagatcgaaa aggttatctg caatgttgta ggccagtcca tcgaacatct      2940
     tcccgtttca tacaaaatga tagcggaaga gacagcacag gacgaagcac tgcgtaaagt      3000
     tacgagcttc atcaggaaag gctggcctac cgaagcaacc agcgagcatt caagcgtaca      3060
     acagtttttc gcacgtcgag attcgctgta tgaagcgcag aaggtcctga tgtacggcga      3120
     ccgagtggtt atccccaaga agctgcaaca aaaggtgctt cagcagctgc acaagggaca      3180
     tccggggatc gaacgaatgc gctccttagc tcgaaatttc gtttattggc caaatatcga      3240
     cgaccacgtc accgctctgg ttcgaaattg tcatgaatgc gcagcggcgg ccaaaacaga      3300
     caccaaaact aaattgcaat catggccagt gcctgaaaag ccatggcaga gggttcatgc      3360
     ggacttcgca ggtcccgtcg acgatactta ctatcttctg ctggttgatg cactgtccaa      3420
     atggcccgag gtagttccaa caaagcgaat cacgacagca gccaccatag ctattcttcg      3480
     taaaatcttc agccggtttg gtatgccgga agtcttagtt tccgacaacg gagcccaact      3540
     aaccagcgat gcatttgaga gattttgcga gtccaacggt atcatgcatc tgaaaattgc      3600
     tccattccat ccacagagca atggattagc cgaaaggttt gtcgatacct tcaaaaggac      3660
     aattaagaaa attcaagcag gaggggaaga tatagaccaa gccatagaca ctttcttgct      3720
     ctgctatcgc tctacaccca gtcgaaatgc gccaggagga aaatcacctg ccgagattct      3780
     tttcggcaaa cctcttcgaa catcgtttga gctcatgaaa ccaccaagca aattcttcaa      3840
     ggatgtgaac tccaaacaag acagccagta caacgaaaaa catggagcaa aagccaagta      3900
     ttttgatgtc aaggaacaag tgtatgcgca agtacaccac ggaaacgagt ggagctggat      3960
     accaggagaa gtagtggaac gtattgggca agtcatgtac aacatttggc tgcctgatcg      4020
     taaacggctc atccgctgtc acagcaacca gttacgaaac cgctacggca gcaaaagcaa      4080
     cccagaagta accaatccag atgttccact cgatattctg ctcgacacgt ggagtttaaa      4140
     tccaacaaac tccgaagctg ctgtagaagc agtagaaccg ccaactgagc ctgatggatt      4200
     gaacgagtta cagttggaat tcctgcggaa cctgatgcaa ccggatcagc agcaacgtcg      4260
     acagagaact ccggttaggc aacctgagtt agatgaagtt attcagcgac gatcatcgag      4320
     gcaacgacgt gcaccgatcc gctacgagcc gtatcagctt tattaaacag gggagg          4376
//
ID   Gypsy-599_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-599_AA_;
KW   Ty3_gypsy_Ele67; Gypsy-599_AA-I; Gypsy-599_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 226 BP; 55 A; 54 C; 41 G; 75 T; 1 other;
     tgttgggcac ccctatcgcc gactctgmca ttcttctaca ctgtcgccta tcggcagtgc        60
     caactgctac gtcaccgaag aagtctgtca tcagttcgta catatacgag tagcagtaca       120
     cctgtgtgca gagcatgtac attttaattc gtttaattgt taattattga ataaagttat       180
     tgtttgttac gagtcataat tctccgcctt atttcccatc gtaaca                      226
//
ID   Gypsy-59_AA-I repbase;    DNA;    INV; 5155 BP.
XX
AC   supercont1.119;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_AA_;
KW   Gypsy-59_AA-LTR; Gypsy-59_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5155
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.119; Positions 1702987 1708141.
XX
CC   Positions [4119-4580] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1575..2861
FT                 /product="Gypsy-59_AA-I_1p"
FT                 /translation="MPMVVQQIADPKSRSFGNGDPNNSKKCYNCNRYGHIA
FT                 RETDKCAARDFTCFNCGTKGHFKVCCRKRKHNEPRNEHSFKKAQKYKRIHA
FT                 IQGNHEDHKAVFFVDDKQLNEVLRMDVGGVEIALLVDSGSPANIINAQTYE
FT                 FLKRNNAHILNERNPDHEDMKLKSFASDGNILFSSAFEAQIKIPGEDSGIW
FT                 SHILVAPQGQTNLLSKSTAFALGVLKIGYYVNSVSSENISGSLSEFPKVPD
FT                 VSLRIQIDESVQPIAQAARRFPIAMEADVENAIQELLQKNIIERAEGPLTW
FT                 VSPLVPIRKTDGRIRLCVDMRAANKAVRRENFPMPNIDVAMASIRKVSRLS
FT                 KIDLEAAYYHFELDRQSRNITTFVARSGVYRFCRLMFGIKSAPELFQREME
FT                 NLFRGIKGLIVYMDDLLIYAETDEEHDEILKQVTI"
FT   CDS           2964..5054
FT                 /product="Gypsy-59_AA-I_2p"
FT                 /translation="MNMKINEQKSRFGVKEVIFLGHHVSTEGIKPTDEKIR
FT                 AILNLQPPSSTTELRSLLGLINFVGKFVPNLATMTRHMRSLLLKQNSFVWG
FT                 EEHSRELEAIKTVLGKVETLGYFDPTDETRLITDASPFGLGGILVQIKNGV
FT                 SRTISCISKSLADHEKKYCQTEKECLAIIWAMEKLFIYLYGIRFTLVTDCK
FT                 PLEYLFNKSQSKPSARIERWILRLLSFDFTVEYEPGQKNLADPLSRLTQGS
FT                 AIAETEPDVIAWLSEQVRPTAISLDDLENASEVDEELQKVKEAVHSRNWDD
FT                 VPSEYKNATIKEDLSLFGELILRGDRIVIPKALRERVINLAHLGHQGSTSM
FT                 KAQLRAKVWFPAMDKMIDSVVKNCKPCRMTSLPDKPNPMSRRLPTEPWQDV
FT                 AIDFKEGLPGDMSLLVVVCYTSRFIQVEPMKPATTQRVIGALLKMFSSFGI
FT                 PRSITADNGPQFKAVEFKNFCFSYGIHLNISTPYWPEQNGAVERQMRNIGK
FT                 RIKISSIQNTDWKTDLNEYLMLYHSTPQETTGLSPYKMIFGREVYNGIPSI
FT                 HQPPTLALEAAKDRDMALKEHQKELADTKRQAKHHDLESGDTVLQRNLKKG
FT                 ALQPNFTAEEFKVIGVNKGAVQIESNETGNVYVRNSAHLKKLKGNSTSNDY
FT                 TISETAGPSNTTGLDEDDGDKPEASSTNNRQMLERRRKIPAKYEGFVL"
XX
SQ   Sequence 5155 BP; 1694 A; 949 C; 1205 G; 1307 T; 0 other;
     atggcgacga gaatggaaat cggtacgtga aaattatcag tttagtgcaa attgtagttt        60
     tagtgttaat attacagtat ggtgtgatca tttgagccaa gaaaaaaaaa atatctggaa       120
     ataaattgca tgaaaagtga acaaaatcat aagaggaatt gaaaaaaaaa tgaaaccaac       180
     gcagagtgaa gaaaaacaaa atggcggtaa aagtgagaga ggaataatgg tgaaaaaaat       240
     tctttggcaa gagtgacgcc atcgataaag ccagaaaaca tgaaaaaaaa aacagcggca       300
     atggctcagg gagacttaga aaattttgtg cgttttacat acaacgaaga taattaagca       360
     cagttgcaga tttgttttgg ccagtgatca tttttcttga cgattccaat atgttttttt       420
     tgcgatcgaa tcaaacaaat gtaacgtaga tgagcttcgt gcagtagtag taaatggttt       480
     ttgtgttgct tcgtgcattc gatgctcttg cagggaatcc tgaaagatgg agttgctttg       540
     tgctgtttat tgtgctgcgt gtgcattttt tttgctacgt gctggatatg ctgtgtgatt       600
     gctacgtgct gggtttgcta cgtgctgggg taattgtcca gtttcgatga gaagtaatat       660
     ttgaggttat gcttcgtgcc gagcttatgt gtgtgtgtgt ttggttatgc ttcgtgccga       720
     gcttcgtgca aaaatagaaa caagaagaaa cacagaagag tgaatataga aaaacgccgg       780
     cattatgtat tgacccgaag aaacgacatg aaatcgaaaa aaatgagtta tatatgataa       840
     gtgcacgcat gataaataaa aataagtgat aatggaagca aaaaaaatgt atcgggagag       900
     ttatttatga tgtttggttt cagatgcatc ggtcatgcca ccgttcaaaa ttggcagtga       960
     tcccagaaat gattggctca aatggaaaag agcgttcgaa aggtttctca aagcaaattc      1020
     agttgaagaa gatggagaaa aatgcgatct gttactggtg ctgggtggca tggagctaca      1080
     atcctactat gataaggtat tcaaatggga ggtgcaaacg cctacggctg atggaaatgg      1140
     ggatcttatg caagtgaagt atgattcagc tgttttgtcc ctggacaaat attttgcacc      1200
     tcaatcgaaa aagcgtttcg aaaggcatct tctcagagcg atgaaacaag aagaacagga      1260
     accgttcgag gaatttgtct tcaggctgca ggatcaagca aaccggtgtg cgttcgctga      1320
     tgtcgacgac atgattgtcg accagataat cgaaggctgc aaatcatcag atctaaggaa      1380
     gcgcctgctg acagaggatg tgactttgaa cgattcgatt atactcggca agaccctcga      1440
     ggaagtacag aagcaaacca aggaatacga aagacatcca ctggcggtaa aaacattaga      1500
     attacgaaat gagtaagtac tatttttttt attaatttat tgttgtattt attattcacg      1560
     gatagatacg agagatgccc atggtggttc agcagattgc agaccccaaa tctcggtctt      1620
     ttggtaatgg tgacccaaat aactctaaga aatgttacaa ctgcaataga tatggtcaca      1680
     ttgccagaga gacagataaa tgcgctgcta gggattttac gtgtttcaat tgcggaacta      1740
     aagggcattt caaagtatgc tgtcgaaaaa ggaagcataa tgaaccaaga aatgagcaca      1800
     gtttcaaaaa agcgcagaag tataaacgga tccatgccat tcaaggaaac catgaagatc      1860
     acaaagcggt gttttttgtc gatgacaaac aacttaatga agtgcttcga atggatgtgg      1920
     gaggggttga aattgcattg ttggttgatt ctgggtctcc agctaatatt atcaacgctc      1980
     aaacatacga gtttctcaaa aggaacaacg cacacatttt gaacgaaaga aatccagatc      2040
     acgaagatat gaaactgaaa tcctttgcct ccgatggaaa cattttgttc agtagcgctt      2100
     tcgaggcaca aatcaaaatt ccaggagaag attctggaat atggtcccac atccttgtcg      2160
     ctcctcaagg tcaaacaaac ctgctaagta aaagtactgc atttgctttg ggagtactta      2220
     aaattggcta ttatgtgaac agtgtaagct ctgagaatat ttcaggaagt ctttcagagt      2280
     ttcccaaagt gccagacgtg tcattgagaa tacaaattga cgaaagcgtt caaccaattg      2340
     cacaagctgc caggagattt cctattgcaa tggaggcaga tgttgaaaac gccatacaag      2400
     aacttcttca aaagaacatc atcgaaagag cagagggtcc attgacgtgg gtttcaccgt      2460
     tggtgccaat tcgaaaaact gatggacgga ttcgtttatg tgtggacatg agggcagcaa      2520
     acaaagcagt acgacgagag aactttccaa tgccgaacat cgacgtggcg atggcatcca      2580
     ttcgtaaggt atcaaggctc tctaaaattg atcttgaagc ggcgtattat cattttgagc      2640
     tggatcgcca aagccgaaat atcaccacat tcgtcgcacg cagcggcgta tatcgctttt      2700
     gcagactgat gttcgggata aagtcggcac ctgaactatt ccaaagagag atggaaaatc      2760
     tcttcagggg aattaaagga ctgattgtct acatggacga cttactgatc tatgcagaaa      2820
     cggatgagga gcacgacgaa atcttaaagc aggtaacaat ttgaatcttt gtcttttgta      2880
     gggtaataga tgagaatata cagagatgtt aagcatatgt acatttgatt ctgtttgaac      2940
     aggttttgga acgtattgaa caaatgaaca tgaagataaa cgagcaaaaa tcacggtttg      3000
     gtgtcaaaga agtcatcttt ctgggccatc atgtttcaac agagggaatc aaacctactg      3060
     acgagaaaat cagagcaatt ttgaacctgc aacccccctc atcaacgacg gaattaagat      3120
     ctcttttggg tttgataaat tttgtcggta aattcgttcc aaatctggcg actatgaccc      3180
     ggcacatgcg atccttattg ctaaaacaaa actcttttgt gtggggcgaa gaacattcac      3240
     gggagctaga ggctatcaag acagtcctag ggaaggtgga aaccttagga tattttgacc      3300
     cgactgacga aacgcgatta atcacagatg cgagtccatt tggattagga ggcatactag      3360
     tccaaattaa gaatggcgta tccagaacca tttcatgcat ttctaagagt ttggcagatc      3420
     atgagaagaa atactgccaa acagaaaagg aatgtcttgc catcatatgg gcaatggaaa      3480
     aactgttcat ctatctgtac ggaatacgtt tcactctagt aacggactgt aagccgcttg      3540
     aatatctgtt taacaaatca cagtctaagc cttccgctcg tatcgagcgt tggattctgc      3600
     gtctattgag cttcgatttc accgtggaat atgaacccgg acagaaaaat ctagccgacc      3660
     cactatccag attaacacaa ggatcggcca ttgctgaaac tgaaccggat gtgatagcgt      3720
     ggttatcgga acaagtacga ccaaccgcta ttagtttgga tgatttggaa aatgcctctg      3780
     aggtggacga ggagcttcaa aaggtcaagg aggcagtaca ttcgagaaat tgggatgacg      3840
     ttccgtcgga atacaaaaac gcaactatta aggaagattt gtctttgttc ggagaactaa      3900
     tccttagggg cgacagaatt gttataccca aagcgttgag ggaaagggtg atcaatctgg      3960
     cccaccttgg acatcaagga agtacttcca tgaaagccca acttcgagct aaggtgtggt      4020
     ttccagccat ggacaaaatg atagattctg tcgtaaaaaa ttgcaaacca tgcagaatga      4080
     catctcttcc cgacaaaccc aatccaatgt ccagacgact tcctacagaa ccctggcaag      4140
     atgtagcaat tgattttaaa gaaggccttc ctggagatat gtccctgctg gtcgtggttt      4200
     gctacacttc acgtttcatt caggttgaac cgatgaaacc ggccaccact caacgtgtta      4260
     tcggcgccct tttaaaaatg ttcagttcat tcggaatacc aaggtcaatc actgctgaca      4320
     atggcccaca gttcaaagcc gtcgagttca agaatttctg cttcagttac gggatacacc      4380
     taaacatttc taccccatat tggcccgagc aaaatggcgc tgtagaaaga caaatgcgca      4440
     acataggaaa acggattaaa atcagctcca ttcaaaatac tgactggaaa actgatttga      4500
     acgagtattt aatgctgtat cactctactc cacaagagac cacggggtta tccccataca      4560
     agatgatatt tgggagggag gtatacaacg gcataccgtc catacaccag ccaccaacac      4620
     tggccttgga agctgccaaa gatagggata tggcattgaa agaacatcaa aaggaactcg      4680
     cagatacgaa gcggcaggca aaacatcatg acttggagag cggagataca gtattacagc      4740
     ggaatctaaa aaagggtgcc cttcaaccga atttcacagc cgaagagttc aaagtgattg      4800
     gtgttaacaa aggagcagta caaatcgagt ctaacgaaac tggtaatgtt tatgtgcgga      4860
     acagcgctca tctgaaaaag ctgaagggaa attcaacatc gaacgactac acaatttcgg      4920
     aaacagcggg tcccagtaac acgacaggac ttgacgaaga cgatggagat aaaccggaag      4980
     cgtcgtcaac gaacaatcga caaatgctgg agagacgccg aaagatacca gctaagtatg      5040
     aaggattcgt attgtaagta acgataagga tgcgggtaag tcaatcttta ttgtaaataa      5100
     atatcgggta attcaaaaga gttttatagt tttcttgact aaaaaaaagg aggga           5155
//
ID   Gypsy-59_AA-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   supercont1.119;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_AA_;
KW   Gypsy-59_AA-I; Gypsy-59_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-234
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.119; Positions 1702753 1702986.
XX
SQ   Sequence 234 BP; 75 A; 33 C; 73 G; 53 T; 0 other;
     tgtaacggat gaagatatca taccttgggg aacaatgact ttgattcgaa tgagatttag        60
     taacgggttt acttggcgta tgaatgaaag acggaataaa agataaagtg gtagaaccgg       120
     gatgaccgac aagagctgga tcagtcgtgt tcggacggtg atgacgatcg gttgacaagc       180
     gagtcgtgga gtgagcaatc agacggagaa gagattcgga cgcggaattt taca             234
//
ID   Gypsy-59_AnFu-I repbase;    DNA;    INV; 4147 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4147
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2943-2943 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           502..1005
FT                 /product="Gypsy-59_AnFu-I_1p"
FT                 /translation="MPLGDLKPSQLLNEMRRVAGDSLGDTVLLDLWATRLP
FT                 PHAHAAVIASKGDASDKMAIADAILDSISLRSVHAVDGSTVAGEVAPQRPT
FT                 LSPGEEIAELKLHVLRLSKQFEQLQASSRPRNRPRSRSRPRAPTIAPTRPN
FT                 TVKLCYYHRTFGEQARKCVQPCNHVQQMQ"
FT   CDS           1009..4116
FT                 /product="Gypsy-59_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QHVAEAVGKSGAEHSTSTAAIYRLKIVDQRSQQQFLI
FT                 DTGADVSVIPRGLHSADVKPTTVQLFAANGTIINVYGEVMLNVQLGLRRDF
FT                 LWTFLIADVSSGIIGADFLRHFDLLVDLKRNRLIDNTTSLQTIGSVTRTES
FT                 SSLKSFDATTPYAALLAEFPDITCTAPPGTVCTATVVHRIETTGQPSFARP
FT                 RRLPPDKLQAARNEFEQLMRLGICRPSSSNWSSPLHMVRKADGSWRPCGDY
FT                 RSLNVQTVPDRYPIPYLQDFTSILHGKSIFSKIDLQKAFHQVPIHPEDVPK
FT                 TAITTPFGLFEFQYMTFGLRNAAQTFQRLIHEVVRGLDFVFPYIDDTFIAS
FT                 SSQDEHKDHLRQLFQRLKQHRLTINVAKCKFGQSNIDFLGHSVSAEGICPL
FT                 NERVEAIQHFKLPSTVKELKGFLAMINFYRRFVPNAIRTQAPLLEMTPGNK
FT                 RNDRSPLVWNDKTKAAFEQCKVQLAQATLLAHPAKEAALSLWVDASDFAAG
FT                 AVQHQVVDGKVQPLGFFSKKFDKAQVRYSTYDRELTAIYLAIKHFKYMLEG
FT                 RECHVYTDHKPITFAFRQKLDKASNRQARQLDYIGQITTDIRHVGGKDNIV
FT                 ADLLSRITAIHSTSSLDYNKLAESQQHDDELEAILSGTKKSALKLKLFTVP
FT                 GSDKQLYCDYSTDRIRPFVTERFRDTALRITHDLSHPGSRAMTKLMTQRFV
FT                 WPSIRRDSAAFARNCVQCQRSKVTRHTKSPLTHYPSTDQRFSHINIDIVGP
FT                 FPPSKGQRYCLTIIDRFTRWPEVTPVPDITSTTIAEALISTWISRFGVPSC
FT                 ITSDQGRQFESSLFSELTRLLGAKHLRTTAYHPQANGIIERFHRTLKAAIL
FT                 CHDPNRWCEHLPMILLGLRSTFKQDLDASPAEMVYGTTLRIPSEFFADSTP
FT                 PTSTTTESDFVTNLRISMRKLRPQSTAWHGSRKSFMPPDLSSCENVFVRVD
FT                 AVRPALTAPYEGPFKVISRSEKFFKIDKNGREVNISIDRLKPAYALSEQPN
FT                 VSDADTATPDTVPTRVTRSGRKVTFPKKYR"
XX
SQ   Sequence 4147 BP; 1125 A; 1130 C; 899 G; 993 T; 0 other;
     aattggtgac cccgacgtga tcacgtgcag gaaacaacgc agcaagtctc atcgcagcaa        60
     agcgtcacct cgttcaccga accggcatac aatcctcatc gaccgccatt ttgtagatcg       120
     ctcttaacca ccggtccaag atgcccgacg gagctgcaac ggataccgga attggcaata       180
     ctccgggcgt ttccagcgca gccaaatgcg tggaaacgat aaacactcct cgcttgaaac       240
     caccagctat gaccgactct aatattgagt catatttcct atccctcgaa ttttggttcg       300
     ccgcgtcagg tctcggtgcc caacacgaca caaacaagta caatattgtc atggccacaa       360
     gtaccaccca acaagctaac cgaattgaga ccgatcatcg acgcaacacc ggcgaaggaa       420
     aaatacgctt atataaagga gaagctcact gcgtattttg cggatagcca gcagcgtagg       480
     ctccaacgag ttctttctga catgccgcta ggagacctaa aaccgagcca gctgcttaat       540
     gaaatgagga gagttgcagg ggattccctc ggggatacgg tgctgttgga tttatgggct       600
     acacgtttac caccacacgc acatgcggca gtgatagctt cgaaaggcga cgcatcagac       660
     aaaatggcta tcgcggacgc cattttggac tccatcagcc ttcgtagcgt gcatgctgta       720
     gatggcagca cagtcgcagg agaggttgca ccgcaacgtc caacattatc acccggtgag       780
     gaaattgccg agctgaagct ccacgtgttg aggttgagca aacaattcga gcagctgcaa       840
     gctagctcga gacctcgcaa ccgccctcgc tcccgatcac gtcctcgagc tcctaccatc       900
     gcacccactc gtccgaacac cgttaaactg tgctattatc atcgcacctt tggagagcag       960
     gcccgcaagt gtgtacaacc ttgcaaccat gttcaacaaa tgcaatagca acacgtggct      1020
     gaagctgtgg gtaaaagcgg cgcagaacat tcaacctcca cagcagcaat ctatcggtta      1080
     aagattgttg atcagcggtc ccaacagcag tttttaatcg ataccggtgc agacgtttcc      1140
     gtcattccac gtggattgca ttcagccgac gtaaagccaa ctacagttca gctgttcgcc      1200
     gccaacggga ctattattaa cgtgtacggc gaagtgatgc tcaacgttca gctaggactt      1260
     cgccgcgatt tcctatggac atttctcatc gctgacgttt cttctggtat catcggcgcg      1320
     gatttccttc gtcacttcga tctattagtc gacctcaaaa gaaaccgctt gatagacaac      1380
     accacgagcc tccaaaccat tggttctgta actcggactg agagcagctc tttaaaatca      1440
     ttcgatgcca cgacgcctta cgcagcactg ctagctgagt ttccggacat cacttgcacg      1500
     gctcctcctg gcacagtgtg tacagcaacc gttgttcatc gcatcgagac gacaggccaa      1560
     ccctcattcg ctcggccgcg tcgtcttcca cctgacaagc tccaggcagc tcggaacgag      1620
     tttgaacaac taatgcgact agggatttgc cgtccatcga gtagcaactg gtccagcccg      1680
     ttacatatgg tgagaaaagc agacggttca tggcgacctt gcggcgacta tagatcactc      1740
     aacgtccaaa cagttcctga taggtacccg attccatacc ttcaagattt tacgtcgatc      1800
     ctccatggta agtcgatttt ttccaaaata gacttacaaa aggctttcca ccaggtaccg      1860
     atacatccag aggacgtgcc taaaacagca attacaacgc catttgggct ctttgagttc      1920
     caatacatga cgttcggctt acggaatgca gcgcagacat ttcagcggct cattcacgag      1980
     gttgttcgtg gattagactt cgtctttccg tatatagatg ataccttcat cgcctcctca      2040
     tcccaagacg agcataaaga tcatctacgc caactcttcc agaggctgaa gcagcatcgt      2100
     ttgaccatta atgtcgctaa gtgcaagttt ggtcaaagca acatcgactt cctagggcac      2160
     agcgtttctg ctgagggtat ttgtccactc aacgagcgag ttgaagccat ccaacacttc      2220
     aagcttcctt ccactgttaa ggaattgaaa ggtttcctcg caatgattaa cttctaccga      2280
     agattcgttc caaacgccat cagaacacaa gcccctctcc ttgaaatgac acctgggaac      2340
     aaacgtaatg atcgttctcc gcttgtgtgg aacgataaga ccaaagctgc gtttgaacaa      2400
     tgcaaagtac aactcgccca agcaactcta ttagcacacc ctgcaaagga agccgcactt      2460
     tcgttatggg tcgatgcttc cgactttgca gctggtgcag tccaacacca ggtagtcgat      2520
     ggaaaagtac aaccacttgg attcttttca aaaaagtttg ataaagctca ggtcagatat      2580
     agcacttacg atcgggaatt aacagctata tatttagcaa tcaaacactt caaatatatg      2640
     ctagaaggac gagagtgtca cgtgtataca gatcataagc ccattacctt cgccttccgt      2700
     cagaagctgg acaaagcttc caatcgtcaa gctcgtcagc ttgactatat tgggcaaatt      2760
     acaaccgaca ttcgacacgt aggaggcaag gataacattg tggctgatct tctttctcgt      2820
     attaccgcga ttcactccac ttcatccctt gactacaaca aattggcgga gagccaacaa      2880
     cacgacgatg agctggaagc tattcttagt ggcactaaga aatcagcatt gaaactcaaa      2940
     cttttcaccg tgcctggcag tgataaacag ctttattgcg actactccac agaccgtatt      3000
     cgtccattcg tcaccgaacg cttccgtgac actgcactac gaatcactca cgatctctcc      3060
     catcctggtt cacgagcaat gaccaaactg atgacccaac gattcgtttg gccaagcatc      3120
     cgccgcgata gcgcagcatt tgccaggaac tgtgttcagt gccagcgttc taaagtgacg      3180
     cgtcatacga agtcaccgct tactcactat ccttcgacag atcaacgctt ctcgcatatc      3240
     aacattgaca tcgtcggtcc tttcccacct agcaaaggac aaaggtattg cttgaccata      3300
     atagaccgat ttacgagatg gcctgaagtt actcctgttc cggacataac atcaacaacc      3360
     attgctgaag ctctgatttc aacatggatt tcccgcttcg gcgtgccaag ttgcatcaca      3420
     tccgaccaag gcagacagtt tgagtcgtcg ctcttctcag agcttacccg gcttctcggt      3480
     gctaagcatc tccgtactac agcatatcac cctcaggcga acgggattat cgagcgtttt      3540
     cacagaaccc ttaaagctgc cattttgtgt catgatccga atcgttggtg tgaacatctt      3600
     ccaatgatac ttcttggatt gcgcagcaca tttaaacaag atcttgacgc atcgccagct      3660
     gagatggtgt acggaactac actaaggatt ccatccgagt tctttgccga cagcacgcct      3720
     ccgaccagta caactaccga atcagacttc gtaaccaatt tgcgtatttc tatgcgtaaa      3780
     cttcggccgc aatcaacggc atggcatggc tcgagaaaat ctttcatgcc accagacctg      3840
     tcttcgtgtg agaacgtctt cgtacgagtt gatgcagtga ggccagcact aacagcacct      3900
     tacgaaggac cattcaaggt catcagtcga tcagaaaaat tcttcaagat tgataagaat      3960
     ggtcgagagg tcaatatttc gatagatcgc ctcaaaccgg cttatgcttt aagcgagcaa      4020
     ccgaatgttt cggatgcaga cactgcaact ccagatactg ttccgactag ggttactcgt      4080
     tccggtcgta aagtaacttt cccgaaaaag tatcgttaac cgcaacccta gtctaggagg      4140
     ggagtaa                                                                4147
//
ID   Gypsy-59_AnFu-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-223
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2871-2871 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 223 BP; 71 A; 40 C; 50 G; 62 T; 0 other;
     tgtagcagca ctgtacagtg gtgtcatccg cgcgatcgtt gtatatatat tattgttaat        60
     ctgtcacatt gctggaaagc aaagtgacag cgcaaagcac agtagagtat tgactagcaa       120
     acgagcaaga cgtgcgaaga ggcttttgtt aaattttccc ttgtgtaact cgtgttaaaa       180
     gaattcatga ataaagtccg tcaagtagta cgcataaact aca                         223
//
ID   Gypsy-59_CQ-I repbase;    DNA;    INV; 11272 BP.
XX
AC   AAWU01037375;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_CQ_;
KW   Gypsy-59_CQ-LTR; Gypsy-59_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-11272
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 497-497 (2011).
XX
DR   Genome; AAWU01037375; Positions   26390   15119.
XX
CC   Positions [4705-5166] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           284..1714
FT                 /product="Gypsy-59_CQ-I_2p"
FT                 /translation="MTDRILELRSRGIQFVTELKRRRSERQRRSYSFSEPP
FT                 EDPDHNPGPLIHSFSAEFLFAKGVQANSSLLDKSKFEADLEEISFKDPEIP
FT                 VPKEELLTFLEEHSVLDPEVDPEVEDLPNVTFNELQASFIETSLNFEKLLF
FT                 KMAFAFVKAVTCIPDFDGSYEQLQTFLDVVDIFARQAIPAAPAAAAAGDNN
FT                 NDAAENVNANEIQLLAAVRMKLKGKALDKASEIMKPTWALTRASLQEQFQS
FT                 VISMESISRMINNLKQEYAESFVDYKERADKIYSYVRLLGENEFADRQLRL
FT                 NFISGIRLASMRQFATTLDSATYADLAKELKKKGDFMDEVTECWQKKNKAR
FT                 IAFDSNFNPNSSRTNDQSSRNNSQRQNYSYNNNNNNNSRNNNNNSRRDNTN
FT                 QNHSFSNTNSPNQNSSNRQNSNVSDLNNSSNFRPSLNSTGFNHTRQNQNRN
FT                 NNSTLFTQNPNQVEIPFCEPSTSYMTAMSSKN"
FT   CDS           1786..5517
FT                 /product="Gypsy-59_CQ-I_1p"
FT                 /translation="MGLNKKVKIDIFHSPNKHFLIEAITERCPNTKTTFLL
FT                 DTGAHRNFLKASLLSQLKIKSKDIDKADIIPVIGVSNTQVMSIGSVWVKLC
FT                 IEGVTFPIKFHLLENLLAAPAIIGAEFLKTHTTFVGNHFEYMIWQRFPDVT
FT                 VEYEKEHCPTLSNDFTQYDESFTGIVNETVSQEEWEENLLDEILDLEKNTD
FT                 CDFIEYKNTEPIEGHERLQELAKLIDLSHLHPENFAGVRDIIIKHKDIFFL
FT                 AGDRLSTTYAAKHEIETTTNVPINKRQYRFPEATKSHINEEIEEMLKQGII
FT                 KPSTSPWNAPVLCVPKKPDPNGNKRYRIVVDFRALNTITKSFIYPIPLINE
FT                 ILDNIGESSYFSSLDLKSGFYQVPIDPRDAQKTAFSTPRGHFEFTRMPMGL
FT                 KNSPSTFQRLMNSIIYEIGDVQAFVYLDDIIIFGKNAKEHNHHLKKVLNAL
FT                 RKHNLKIEPGKCQFLKNEIQYLGHIISKEGIKPTNANIKVIQGLKPPKTIK
FT                 EVRSFLGTVNFYGKFIPDIAGKRKPLNDLLKKNVKFVWSDDCQRAFEELKE
FT                 SLISEPLLVRPNYKDTFVLTTDASDYAVGTVLSNEKTIDRPIAYASKALKD
FT                 SEKRYHTIEKELLAIVWAIEYFRHYIFNQKFIIYTDHRPLIAIDRLKETSP
FT                 ILTRLRLKLIGIECDIRYKQGRENIVADFLSRINTPEQEEIQAAVTTRAQN
FT                 KKNEEGKDKEVISADQSRLTPPNDSDENNPLTILPYVNNDIRETENKAKED
FT                 LYSCFEYAVTNYAFMDTNITPSDNFFTQEDCDGRFVIANSKNLHNELSELC
FT                 KLPHGSRQFAREKVINIPENKLWGIVVHGNSRALIESRKFFDLFVTHFLEC
FT                 FKNFKINSKIQIIAFRQIRQPEILQMIEFVAWKLNMNIHLYNANAERINVR
FT                 PDEVETVLREFHDAPLGGHIGAKRMRKRVGLVYHWKNMRRDIENYVRQCDS
FT                 CQRNKIGKSNKIPMKITSTASEPFEKIYMDIVVLPESECGNKYGLTVQDDL
FT                 TRYLNIIPIANQESVTIARALICKFGTPLEVVTDRGTNFMSNLMKEVCKLL
FT                 KIKKICTNAYHPQANLVERSNRELKTYLRQFVCNRPKMWDQQIPYFLFEYN
FT                 TAFNSSTGFSPYELIFGKSPRIPASIYVVKEGMTYNEYVLEMKKIFADIHT
FT                 KALENLVVSKTKSKQIYDESANEWQPMWGEKVYVHNVPTGTGQKLQSYWRG
FT                 PYEVVELKSEQTTVLKNGNKLEEVHNNRLKRYVD"
FT   CDS           5768..7522
FT                 /product="Gypsy-59_CQ-I_3p"
FT                 /translation="MKLRLSDLVTGGKLLNNSILNFQSTCDTLVNQSSTIG
FT                 CSKISKNLESIVTQISDRNDYLKTFVKKRAKRSWHTLGIMNTDDLARIDND
FT                 LDRLRGNEEQIKNSINRQTEVIDSIYNFINNSMEQLNSKILSLHIKVKNVT
FT                 HLTNEDKKFHNKIRETLNLENELMGLGLWIQLVSEELKQQQQIFTQLILNV
FT                 EQSIDTTLVTKLVEPKLLLNILMSQTNTLPVDTTFPRRRDNQIYPEIVNLI
FT                 EISSKVGSNLEIHVSLKIPLVNRKIYETYEAETEPGLLNDLVSFIKVDPNV
FT                 LLLAEGTNWGHIISSTEFDNCQQLGDVAMCQLQAIEEDLADKNECLTMFYF
FT                 KNSTATCEIRVLKATTNLWFKSREPNVWTYVAPNKTDIELLHGKNITRLSV
FT                 YGTGKIRLNVNMQIRTKHVRIDYVNYNESEITELIIHAPNQTYLNLSNFNY
FT                 KINDIPLIEEGKNIYSIIDHKSLFNLGIDVKDLQNYKTTLKNIIYDPMDHP
FT                 WEFTGLLSGVALGMGGLICLILCNFKGSVVVNKTRVVPNTQTFDLSDTMFQ
FT                 GKIFTEKPATIIDCGTNMHTVKPSNYGVKPSYYGIKIQ"
XX
SQ   Sequence 11272 BP; 4292 A; 2256 C; 1962 G; 2762 T; 0 other;
     cgtggtgaca gcgcaaaccg gctcaaggag agtcacggaa cgccattcct gaccaggaca        60
     aaaccagatg agatccctca taatactgtg gtaagtaact attttttttt tatctttttc       120
     tgtgtgatga aaaaaaattg taaagtgaaa attgcagtga taatttgtgt gtaacgttta       180
     aagagaaatt aatgaaattt gtgtttttat tctctcttgt cattaaattt atttttcatt       240
     ttaatgacga aatcacgcaa taaaaaattg gattacattt taaatgacgg acaggattct       300
     tgagcttcgt tctcgtggaa tccagtttgt tacagaatta aaacgacggc gaagtgaaag       360
     acaacgtcgg tcttactctt ttagtgaacc gccagaagac ccggatcata atcctggacc       420
     tttaatccat tctttttctg ctgaattcct ttttgcgaaa ggagtgcaag caaactcttc       480
     cttattagat aaatctaaat ttgaagcaga cctcgaagag atctctttta aagatccgga       540
     aataccggtt cctaaagaag aacttttgac ctttctagaa gagcacagtg tcctcgatcc       600
     agaagtagat ccagaagtag aagacttacc gaacgttaca ttcaacgagc ttcaagctag       660
     ctttattgaa acaagcctta attttgaaaa attattattc aaaatggcct ttgcatttgt       720
     caaagccgtc acttgtatcc cggatttcga tggctcctac gaacaactac agaccttttt       780
     ggatgtagtt gatatttttg caagacaggc catccctgcg gctcccgcgg cagctgcagc       840
     gggagataat aataatgatg cagccgaaaa tgtcaacgcc aacgaaatcc aattacttgc       900
     ggcagtcagg atgaagttga aaggaaaggc cctggacaaa gcttcagaaa ttatgaaacc       960
     aacatgggcg ctgaccagag caagtcttca agaacaattc caatccgtaa tctcgatgga      1020
     gagcatctcc aggatgatta ataacttaaa acaagaatac gcggaaagct tcgtcgacta      1080
     caaggaacga gcggacaaaa tatattcata tgtgagattg ctgggagaaa acgaatttgc      1140
     cgacaggcag ttacgtttaa atttcatatc aggaattaga ctagccagca tgcgacaatt      1200
     tgcaacaacg cttgactctg caacttatgc agaccttgcg aaagaattaa agaaaaaggg      1260
     agatttcatg gatgaagtca cagaatgttg gcagaaaaag aataaagcca gaatagcctt      1320
     tgattcgaat tttaacccga atagctcaag aacaaacgat caaagctcca ggaataactc      1380
     acaaagacag aattatagtt ataacaacaa caataacaat aacagtagga acaacaataa      1440
     caattccaga cgggacaaca cgaaccagaa ccactccttt tcaaacacaa acagtccaaa      1500
     ccagaattct agcaatagac agaattcaaa tgtttcagat ttaaacaatt catctaattt      1560
     tagaccctca cttaacagca cggggttcaa ccacacaagg caaaatcaga atagaaataa      1620
     taattccaca ctctttactc aaaatcccaa tcaagtggaa ataccttttt gtgaacctag      1680
     cacatcctat atgactgcta tgagttcaaa aaactaattg aagggggctt tctggatgag      1740
     gaacatcgaa agcctcctca aattgaacaa tttgtaggtt gtactatggg actaaacaaa      1800
     aaagtaaaaa ttgatatttt tcattcccct aataagcatt ttttaataga agcgataaca      1860
     gaacgatgcc ctaacaccaa aacaacattt ctgcttgaca ccggtgcaca ccgaaatttt      1920
     ctgaaggcat cattactatc acaattaaaa ataaaatcaa aagacataga taaagcagat      1980
     ataataccag taataggagt gagtaacacg caagtgatgt ccataggatc agtttgggta      2040
     aaactgtgca tagagggagt cacattccct attaaatttc acttgcttga aaatcttttg      2100
     gcagcaccag caattatcgg ggctgaattt ttaaaaactc acacaacatt tgtgggtaat      2160
     cacttcgagt atatgatttg gcaaagattt cctgatgtaa cagtggaata cgaaaaagag      2220
     cactgcccta cgttaagtaa tgatttcacg caatatgatg aatcatttac gggcattgta      2280
     aacgaaacag tatctcaaga agaatgggag gaaaaccttc tagatgagat acttgattta      2340
     gaaaaaaaca cagattgcga ctttatcgaa tataaaaata cagagccaat tgaaggacac      2400
     gaacgtttac aagaactagc caagctgatt gacctaagcc atttacatcc agaaaatttt      2460
     gccggagttc gcgatattat aataaaacat aaagatatat tctttttagc aggcgacagg      2520
     ctatcaacca cttacgccgc taaacatgaa attgagacaa ccacgaatgt tcctatcaat      2580
     aaaaggcaat atcggttccc agaagcaacc aaaagccata taaatgaaga gatagaagaa      2640
     atgctgaaac aaggcataat taagcccagt accagtcctt ggaatgctcc agtactttgt      2700
     gtaccaaaga aacccgaccc aaacggcaac aaacgttatc gaatagtggt agatttcaga      2760
     gctttgaaca ctattacgaa aagttttata tacccaatcc cgcttatcaa tgagatttta      2820
     gataacattg gggaaagctc atacttctct tcactagatt tgaaatcagg cttttaccag      2880
     gtaccaatag atcccagaga tgcgcaaaaa acggcattct ctactccaag agggcatttc      2940
     gagttcactc gaatgcctat gggtctgaaa aacagcccaa gcacttttca acgtctaatg      3000
     aactcaatta tttatgagat cggggacgta caagcttttg tttacttgga tgatataatc      3060
     atttttggaa aaaacgcaaa agaacataat caccatttaa agaaggtttt gaacgcatta      3120
     agaaaacata acttaaaaat agaaccggga aaatgtcaat ttcttaaaaa tgaaatacaa      3180
     tatctcgggc atattatatc aaaagaaggt ataaaaccca ctaatgcaaa cataaaagtt      3240
     attcaaggcc ttaaaccgcc caaaacaatc aaagaagtaa gatcttttct gggaacggta      3300
     aatttttacg gtaaatttat cccagatata gcagggaaaa gaaaacccct aaatgacctt      3360
     ctgaaaaaga atgtaaaatt cgtttggtca gatgattgtc aacgggcatt tgaggagcta      3420
     aaagaatcac ttatctcaga accattactg gttcgcccca attataaaga cacatttgtg      3480
     ctgacaacag atgcaagtga ctatgccgtc ggtacagtat tatcaaacga aaaaaccatt      3540
     gatcgcccga ttgcgtacgc aagcaaagct ttgaaagatt cagaaaaacg ttaccacaca      3600
     atcgaaaagg aacttttagc gatcgtttgg gcaatagagt attttcgtca ttatatattc      3660
     aaccaaaaat ttattattta cacagatcat aggccattaa tagccattga tcgactcaaa      3720
     gaaacatccc ctatacttac acgtctaagg ctcaaactaa taggcatcga atgcgatatt      3780
     cgatacaaac aggggaggga gaacatagtg gcagattttc tgtcccgcat taatacccca      3840
     gaacaagaag aaattcaagc agcagtaacc accagagccc aaaataaaaa aaatgaagaa      3900
     ggaaaagaca aagaagtcat ctcagcagac cagagcaggt tgacgccacc gaacgactcc      3960
     gacgaaaaca acccactcac tatacttcct tatgtaaata atgatatccg agaaacggaa      4020
     aacaaagcca aagaagacct gtactcttgc ttcgaatatg cggtaacaaa ctatgccttc      4080
     atggacacaa acataactcc ctcagataat ttttttacac aggaagattg cgacgggaga      4140
     tttgtcatag caaatagcaa aaatctgcac aacgagctat cagaattgtg caaattaccc      4200
     catggaagtc ggcaattcgc cagggagaaa gttatcaata taccagagaa taaattatgg      4260
     ggcatcgtag tccacggtaa cagtagagcg ctgatagaaa gtcgaaaatt tttcgatctc      4320
     tttgttactc attttttgga atgttttaaa aattttaaaa ttaactcaaa aatacaaatt      4380
     attgcattcc gccaaatacg tcaaccagaa attctgcaaa tgatagaatt cgttgcatgg      4440
     aaattgaata tgaatatcca tttatataac gcaaatgccg agaggattaa cgttagacca      4500
     gatgaggtcg aaacggtatt acgagaattt cacgatgctc cgctaggggg acatatcggg      4560
     gcaaaaagaa tgcgtaaaag agtgggtcta gtataccatt ggaagaacat gagacgggat      4620
     attgaaaact acgtcaggca gtgcgattca tgccaaagaa acaaaattgg aaaatcaaac      4680
     aaaatcccaa tgaaaatcac ttcaacagcc tcagaacctt tcgagaaaat atatatggat      4740
     atagtcgtcc tcccagaatc tgagtgcggt aacaaatatg gattaacagt gcaagatgat      4800
     ctaacaagat accttaacat tatcccaata gcaaaccagg aaagtgtcac aatcgctagg      4860
     gctttaattt gcaaatttgg cactccccta gaagtagtga cagatcgggg aacaaatttt      4920
     atgagtaatc taatgaagga agtgtgcaaa ctgcttaaaa tcaagaaaat ttgtacaaac      4980
     gcgtaccatc cgcaagcaaa tttggtagaa agatctaata gggaattaaa aacctatctg      5040
     agacaatttg tctgcaacag accaaaaatg tgggaccaac agatacccta ttttttgttt      5100
     gaatataaca cagcctttaa ttcatcaacg ggtttttctc catacgaatt aatcttcggg      5160
     aaatcaccta gaatcccagc ttcaatctac gttgtgaaag aaggcatgac atataatgaa      5220
     tatgttctgg aaatgaagaa aatttttgca gatattcata caaaggcact ggaaaatctt      5280
     gtcgtgagca agactaaaag taaacagata tacgacgagt cggcaaatga atggcaacca      5340
     atgtgggggg agaaagtata cgttcacaat gtccctactg gaactggtca aaaattacaa      5400
     tcatattgga gaggtccgta cgaagtggtt gagcttaaat cggaacaaac caccgttttg      5460
     aaaaatggga acaaattaga ggaagtccac aataacaggc ttaaacgtta tgtggactaa      5520
     atattcaaaa aattatataa acgaaaaaaa aaaagggtaa ttaaaaaaaa aaaaccatat      5580
     gcaatataaa aataaaaaca ataaaagcaa taacactact taacaaaaaa acaaagttga      5640
     cacactactt tgttctcctt tttacaggtt ctgcatctcc atagcggaac caggagaaat      5700
     aaacccatca cttatcctga taagaaggga gaaggtccta gttaaacaag gacactatga      5760
     attagggatg aagctcagat tatcagatct agtaactggg ggtaagttac taaataactc      5820
     aatcttaaat tttcaatcta cttgcgacac acttgtcaat caatcatcca caatcggatg      5880
     ctcaaaaata tctaaaaacc tagaatcaat agtcacacaa atttcagaca gaaatgatta      5940
     tttaaaaacc ttcgttaaaa agcgcgcaaa acgttcatgg catacactag gcattatgaa      6000
     cacagatgac ctcgcccgca tcgataacga tttggatcga ttgagaggaa atgaagaaca      6060
     gataaaaaat tctatcaatc gacagaccga ggtcatagat tcaatataca atttcatcaa      6120
     caactcaatg gaacaattga actccaaaat tttaagccta cacatcaaag taaagaacgt      6180
     tacacactta acaaatgaag ataaaaaatt ccacaacaaa atccgagaaa ccctaaattt      6240
     ggagaatgaa cttatgggcc taggtctatg gattcaattg gtctccgagg aactaaaaca      6300
     acagcaacaa atttttacac aattgattct taatgtggaa caaagtatag acacaacact      6360
     ggttaccaag ttagttgaac caaaattgtt attaaatata cttatgagtc agacaaacac      6420
     ccttccagta gacacaactt tcccacgacg cagagacaat caaatttatc cagaaattgt      6480
     aaatcttata gaaatttcta gcaaggtagg gagtaactta gaaattcacg tatctctaaa      6540
     aatacctttg gtcaaccgta agatttatga aacttacgaa gcggaaacag aaccgggttt      6600
     attaaatgac ctggttagtt tcattaaagt tgatcccaat gtattgcttc ttgcagaggg      6660
     caccaattgg ggtcacatca tcagcagtac agaattcgat aattgccaac aactcgggga      6720
     tgtggccatg tgccaattac aagcaattga ggaagattta gcggacaaaa acgaatgctt      6780
     aacaatgttt tattttaaaa attctacagc aacatgcgaa atacgcgtgt tgaaggccac      6840
     aactaatctt tggtttaaat caagagaacc aaatgtatgg acctatgtcg cacctaataa      6900
     aactgatata gagctattgc atggtaaaaa tataacacga ctgagtgtat acggaacagg      6960
     gaaaatccga ctaaacgtca acatgcaaat ccgtactaaa catgtacgaa tagactatgt      7020
     aaattacaac gaatcagaaa taacagaact aataatacac gcacccaatc aaacgtatct      7080
     aaacttatcg aacttcaatt acaaaataaa tgacattccg ttaatagaag aaggcaaaaa      7140
     catatattca atcatagacc ataaaagcct gttcaattta ggaattgacg taaaagattt      7200
     acaaaactat aaaacaactt taaaaaacat catatatgac cctatggatc acccttggga      7260
     attcacagga ttactttcag gagtagcctt aggcatggga ggactgatct gtctaattct      7320
     gtgtaatttt aagggatcag ttgtagtgaa taaaacaaga gtggtcccta atacacaaac      7380
     cttcgacttg tcagatacga tgttccaggg aaaaatattt acagaaaaac ctgcaacaat      7440
     catagattgc ggaactaata tgcacaccgt taaaccatcg aactacgggg ttaaaccatc      7500
     gtactatggg ataaaaatac agtgaaaaaa aaaattacac cgaaggtata atagcaacta      7560
     atcgaaacat aaaccaaaaa aaaaaacaaa attcacttac tgttttcaaa tttatattac      7620
     ccaaattaaa ataactacat tttcatcctt ctgggcaata tttttttagc aacattccta      7680
     aaaaaaaaaa aaaaataaaa taaaattata ataataaaat aataataatc aagcgagaat      7740
     acgtcataga aatcgaactt accaagttct aacaacgccc ccaataaatc taccttcatc      7800
     acgtaaggcg cgaacgatgc actaggacca ccggcatcgg attcagcatc ctcctcgctg      7860
     gaagtatccc accaagggcc tcccaatgtt tcaagaacag ggggagtaga ccgtacggaa      7920
     tgatcttaaa aataattata gttgtagatc atccactaca catcatcaca ctaaatcaca      7980
     tgcactttta gaatcttacc agataagtcc agccaatctt caggcccagg aaaaccggga      8040
     aaagaacggc taatggctac gtcctcccga aaatcaattt cggaaaggtc cgaaccggcg      8100
     gagctgtaac ctgcatcgat ccacgtgtcg gccatctgaa cacacttttt tgaatgaaac      8160
     tggctcaaaa agtcatcata taacacagcg attccaaacc ttattctagg gaccccgttg      8220
     agaatcgctg acataaaaca tccatacacc tgcatgcatt tttttttagc acaactaatc      8280
     caccactaga tttgcacaac tattttcctc acatataaac gtcaccacac atccatatta      8340
     tcgcataaaa ctcatcactg catacaagat atctgataac acgaccatac catcacaatt      8400
     atcacacgta aaaataaaat aaacacattc actaaatgca cgtattatta ccaccacaca      8460
     gagcaccgaa tcaaagcagc aacagacgcg ataaggaaat tctaaacctg ccgggcgccg      8520
     acgaaaacta caaggacgtg aagcagaaaa cagaacgttg caatttttaa ccctcaccgc      8580
     aacatcataa atataaaaac cgaaaaaaaa gtaagtatgg cccaacagcg aattgacatt      8640
     ttaaacaaaa tgctaatgtg tagcctgtgc cgcgttaaca cgccatggct catcaattta      8700
     aatcaacgac cggacctaga gcgggacatc gtagaattta tcggtgtccc aaggtacgag      8760
     accggccgta ttacgcgata cgcttgtcca tattgtctgg acaagatccg tatcgcgtta      8820
     acaagaaaaa ggcaatttct ctcaacagaa tttgctataa ttcaatttgt tgagcaggga      8880
     ataaatgcct cgccaaacaa tatcgatggg gtcttgcccc caattccata tcctgggact      8940
     caattttatg gaacattgcc tacagcaaca tttccaaaca cccaaacaac aacatttcca      9000
     aacagtgttc tgccagcggc acttcgctcg ttaacaccac ttcagacttc tcaaccgcta      9060
     aagcggacca aaaacattaa aaaaaaaatg aacccaaatt aaagagatca cgcccttctg      9120
     ggacacccaa aactatacac acccgtcaat caaaaaccaa aactaaaaca cagataaatg      9180
     ttcagagctg tgagccagct aataccagct taccccccga gaacaactcg gtggtacgtt      9240
     caccccgtca caattggacg aaggaggcag gaccattaga cacaatatcg catactaata      9300
     ccacacgcaa tcctgaatct gaacatcaac caagcgaatt agaggcattc gatgcatttt      9360
     tggcatcaca tcattattat aatcaacaaa ctcaggagaa ccgtcgtact ccgagtaatc      9420
     caaatattat gcgatacact agcctctaaa gaaaagaagt acatgacaca ttctcctgac      9480
     tattatacca gtgcgaatgc tgtcaatggc aaaatagatg tggttggatt tgtacaattt      9540
     ggggcttata aaaccgtctt gtacaaacat tcaaatattt acaaaacttg aagaagagga      9600
     taggataaat caatgatggc attcggttta gcactcagtt ttttagaatt aacacatgga      9660
     tatatacaat tttttttccc ctttctcttg tctttattta caaaaccaaa ttagaaaatg      9720
     actaccttta acaaggagcc aattgaagtt gtgataaaac aaatatttga catggtagag      9780
     gaggaaaaca aaaaaattga ggtacaaatc agggaaggaa agatagatgg acaggtgata      9840
     gggccaaccg aaaaggcgga tttcatatac gaaggtctta tggaagactt caggaaagag      9900
     aggaaaatga aagaagcaaa gaggagaaga aacggacgca aattcgggtg ctggtagcta      9960
     ggatgatagc taaggatcga tcggtgttca aaaaggcaag cgcatgatgg gtggcgacag     10020
     tccgaaggcg ggccagagag acgattcatt ggatggcaga atgaacaaca tgaaggctag     10080
     aaagagacta cgctgctagc agacgaacca agtgcaacta acggatacgt gaaaaccaaa     10140
     gatgccaaat gaagataacg taccatgaca gaaatacaca cccaacgcat tctgtcaaaa     10200
     aactcgcagg aaaaggaaaa aaaaaggagc gcttttcaaa cgcgcatact gaaaccaagt     10260
     caacggggct cgattgttgc aagccaaacg caacatgtcg gcccacaata catgaatgat     10320
     gcaagctcaa agcatcatcc acaatcaacc gtaaggtacc ccacaatcat tttcatcaaa     10380
     acgtactgtt cagcccacaa cgcacaaaca tggttatcat acaactgtta aggaagtaca     10440
     tatcaaacgt acttgcccta accacatggc aaaactatgg aattagccca acaggccaat     10500
     cgtccccagc gcagtaaagg aaggatacaa ttatcaactg gattgaagaa tcatctctaa     10560
     ggccagccca acgacctagc cattccagga gcggagccta agtaaaccga tcacacgcaa     10620
     ccgaagcaaa catcgagacg acatcgagac gacatcgaga cgacgacgct tcacatggaa     10680
     attctttctt tgaccgcaaa ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa     10740
     aaaggaggag gagacaaatt aattcacctc aaccagaagc aagaaaatta ctacatgagc     10800
     aattattcaa tttttctttt aaaaaaaaaa cacatttttt atattacaca ttataaccac     10860
     ttatattcaa tttttataaa cacatttttt atattacaca ttgtaaacac ttattccatt     10920
     tttcttaaaa aacacatttt ttataataca cattataaac acttattcca tttttcttta     10980
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa acacacactt tttataaaac acattataaa     11040
     cacttcttca attaataaac acttattcaa ttttataata cacatcataa acacttattc     11100
     aatttttaat aaacacattt tttatattac aaattataaa cacttattcc atttttcttg     11160
     aagaaacaca tgagaaaaac ataaaatcag attagcgcct tattcaaaaa cctgcgcgaa     11220
     cacgaagatc gatctttcag taacgatcat cgagctgata agtatggggg ag             11272
//
ID   Gypsy-59_CQ-LTR repbase;    DNA;    INV; 1143 BP.
XX
AC   AAWU01037375;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_CQ_;
KW   Gypsy-59_CQ-I; Gypsy-59_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1143
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 498-498 (2011).
XX
DR   Genome; AAWU01037375; Positions   15118   13976.
XX
SQ   Sequence 1143 BP; 331 A; 280 C; 248 G; 284 T; 0 other;
     tgtaacgcac ctaagttcct acctaaaatc gcatcctcac ccacgcccag acctttcttc        60
     taagtttatg agccagacgt acatgtaccc cgcccagcaa caaggctggc gaggtatcac       120
     taagccaggg gtccgtctct ccactactct ctctttagaa caaataaaaa gtgagagaga       180
     aattcaagga ggctctcact aattgactat ttgagggaga ctctcactaa ttgactaatt       240
     tccccaggta gtgaccttgg cattcctgcc ctcgtttgac tcgggcccgc acacttcagt       300
     gacacctctc ctcgctctac ccctttaccg attccacatt tcccaggaaa agtgcgcaac       360
     tctaataaag cacacctcct attaagtccg cggtcctggt ttcatataca tttggacaag       420
     gacggaatca tgatagcaca caggggcata ttggggcagg tcagggttaa gcaagtccgg       480
     tagcaagtgc gcttcggact atgacgtcac cgtttggtgt ttggggcagg tcaaggcaaa       540
     gaggttcaag cagaaagaag acctctcgcc tgaggatggt acccggggaa taattaacga       600
     gacctccatg tccatcctcc ggaaaactaa aaactgctgg aactcatggg ctcctaacat       660
     acctaattca catagaagga cccaggcgac atcttagtac aacgccctgg gtccaaaggt       720
     caaaacaaca atggaaattt ccactacctg gatcgtggga aaagtccaaa gatcattcag       780
     tagtggaaaa ttccgatacc tttgggatgt ccacgtgttc gcggtctttg accgaaatca       840
     aggtcgtttt cccctcccat aattgagaga gtcgttaatt tagtacaaag aagtggggag       900
     ggaatcctaa tctcgacgct aagtataaat agtgatcgaa gggctctcat aatcagttca       960
     gtgtttacct tcagactcct acagttagtt cctacagtta ttcccttgta attcataaat      1020
     gtaagttgtt tctttttgaa taaagttata aaaggtgaag aaaagtgaag tgatcaattc      1080
     ccgaaagagt aatatcacga tacccctcca gaagaaccga tcgaccggag atcggtggtt      1140
     aca                                                                    1143
//
ID   Gypsy-59_DEl-I repbase;    DNA;    INV; 4620 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_DEl-I;
KW   Gypsy-59_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4620
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7079-7079 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..4074
FT                 /product="Gypsy-59_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MQNRNFAELIKQVQCSQNEPKDAKNIVLPKFNPDRAG
FT                 SDALSWCSTVDYILSENQLVGSALVMSLSKSLEGTASHWLSQTCFPGITWT
FT                 QFRELFLQYFSGTETLAATVMNLLNARPNEGECLSLYGSRMVTSLMARWKS
FT                 LSVEQIAVSVTLAHAAGIDKRLRRLVFTTDIKTRNELHQELKAFSFDTRQN
FT                 QHSSDNLSAPQGKRVRTMSHITCHNCGKPGHKKAECRFNKEATQRQQPRNQ
FT                 QFGAKDRSSVICYKCGKAGHVSTVCPDRQERPPMKSNTIKDVNICTVLEPL
FT                 GTLLQFGESFQFYFDSGAECSLIKETVSLRLSGTRINNVVTLRGIGGNSVC
FT                 STLQILANVLICERSFEILFHVVLDNHIKYDALIGREILSQGIGVTITSSA
FT                 LTMFNEKSVLPVVVSECTPDLAGVDTDLHGQDKDKLLSILQGYSNSFINGI
FT                 PQSRVTTGQLEIRLIDQNKTVQRRPYRLSVEEKEKVRHSIQELLEANIIRH
FT                 SSSPFASPMLLVRKKNGTDRLCVDYRELNANTVSDKYPLPLISDQIARLSG
FT                 ARFFTCIDMASGFHQIPIHPSSIERTAFVTPEGQYEYLAMPFGLKNAPSVF
FT                 QRAINRALGDLTHTYAIVYMDDVMIVARTKEEAFDRLKITLQALVEAGFSF
FT                 NIKKCSFLKSCVEYLGFEVRAGEIRPNPRKIQALTDLPPPQSVTQLRQFIG
FT                 LVSYFRQFVPKFSQLLKPLYALTSKSMSFSWELEHEQIRQKVISILTSEPV
FT                 LTIFDPQFPIELHTDASADGYGAILLHKIENKPRVIEYFSKRTSSAESRYH
FT                 SYELETLAVFNSIKHFRHYLHGRHFIVFTDCNSLKASRTKAELTPRVHRWW
FT                 SYMQSFELDIQYRPGERMAHVDFLSRNPISKDRIQSKGTVEKHINLAEITD
FT                 KWLLAEQQRDVETSSIVSKLRNDDLSEDLAKTFELRAGTLYRKIQRNGKTR
FT                 CLPIIPKPFRWSAVNNVHESIMHLGWEKTLEKMYEYYWFDKMSKYVRKFVD
FT                 NCITCRLSKPPSGRVQAELHPIPKVNIPWHTVHIDITGKLSGKNEQKEYII
FT                 VSIDAFTKFVFLSHTSRLDTESCIKALRSQISLFGVPSRLIADQGRSFSST
FT                 AFRDFCSVQKIDLHLIATGASRANGQVERVMSTLKSMLTAVETGQGSWQDA
FT                 LCEIQLALNCTPNRVTKVSPLELLIGKEARPFGLVPVVENKNDVDIDKVRE
FT                 MAKQNMEKNANYDKARFDKDKATIVRHKVGDHVLLKNEERHQTKLDPKFRG
FT                 PFLVTEILEGDRYKLKALTNNRTYKYSHEFLRRMPEKGITTELDDECDDEE
FT                 ITELNDEVSDEDATDQAGEGCDLEIE"
XX
SQ   Sequence 4620 BP; 1392 A; 907 C; 1035 G; 1286 T; 0 other;
     tcagaagtgg gattacctcc gcctccagcc gacgatgcaa atcttttgtc aattttggag        60
     atgcaaaatc gtaatttcgc tgagctaata aaacaagtgc agtgctctca aaatgaacca       120
     aaagatgcca aaaacattgt tctgccaaag ttcaaccctg atcgtgcagg atcagacgct       180
     ctctcctggt gttcaacggt cgactacatc ttgtccgaaa accagctagt gggcagcgct       240
     cttgtaatgt ccctcagcaa atcactggaa ggcaccgcat ctcactggct ctcgcagaca       300
     tgttttcccg gcattacgtg gacgcagttc cgagaattat ttttgcaata tttttctgga       360
     acggagactt tggccgcaac cgttatgaat ttgctaaatg cacgcccaaa cgaaggagag       420
     tgcttgtcgc tgtatggaag cagaatggtc acatcactta tggcccgctg gaagtcactt       480
     agcgtcgagc agattgcagt atccgttacg ttggcacatg cagctgggat agacaaacga       540
     ttgcgccgtt tggtttttac gacggatatc aaaaccagaa acgagctgca tcaggaactc       600
     aaagcctttt cgttcgacac tagacagaac cagcattcga gtgacaactt atcagcaccc       660
     caaggaaaaa gagtcaggac tatgtctcac atcacgtgtc ataattgtgg caaacccgga       720
     cacaagaagg cggaatgtcg ctttaataaa gaggcaactc agcgtcagca gccccgtaat       780
     caacaatttg gagcaaaaga tcgatcatcc gtgatctgct ataaatgtgg aaaagctgga       840
     catgtatcta ctgtgtgccc agatcgtcag gagcgtccgc cgatgaagag caataccatc       900
     aaagacgtaa acatatgcac agtacttgag cccttaggaa cgttgctgca gtttggtgag       960
     tcgttccaat tttacttcga ctccggagcc gaatgttcac tcatcaaaga gactgtatca      1020
     ctgagattat ccggcactag aataaacaac gtagtgacat tgaggggtat aggtggcaac      1080
     tctgtttgca gcactttaca gatattggcg aatgttttaa tttgtgagcg ttctttcgaa      1140
     atcttgtttc acgtagtttt agacaatcat atcaaatacg acgctctgat tggccgggaa      1200
     attttgagcc agggcatcgg cgtgacaatt acatcaagcg cgcttactat gtttaacgaa      1260
     aagtctgtat tacctgtcgt agtctccgaa tgcactcctg acctggctgg tgtcgatacc      1320
     gatttacatg gacaggataa agacaaactg ctctcaatat tacaggggta ttcaaattct      1380
     tttataaacg gtataccaca gagtcgcgtg actacgggac agttagagat tcgcttgatt      1440
     gatcagaata agacggttca gagacgccct tatcgattga gtgtggaaga aaaagaaaag      1500
     gttagacatt ccattcaaga gctgttggaa gcaaacataa taagacacag ttcctctcct      1560
     ttcgcgagtc cgatgttact tgtccgcaag aaaaatggta cagaccgtct gtgtgttgat      1620
     tatcgtgagc ttaatgccaa taccgtttcc gacaagtacc cattgccact tatatctgac      1680
     cagatagcta ggttgagtgg tgctaggttt ttcacgtgca ttgacatggc gagtggcttc      1740
     catcagatcc caatacatcc aagctctatt gaacggacag cgtttgtaac cccagaaggg      1800
     cagtatgaat acttggctat gccttttggg cttaaaaatg cgccttctgt atttcagagg      1860
     gccattaatc gtgccctagg cgatctgact catacatatg ccatcgttta tatggacgat      1920
     gtaatgatag ttgcacgcac aaaggaggaa gcttttgaca ggctaaaaat aactctacaa      1980
     gcactcgtcg aagcaggatt ttctttcaac attaaaaaat gctcctttct taaatcttgt      2040
     gtagaatatt tgggcttcga agttagagca ggtgaaattc gaccgaatcc tagaaaaata      2100
     caagctctta cagatttacc gcctccgcaa tctgtgactc aactgagaca atttattgga      2160
     ctggtctcgt attttcgtca gtttgtaccc aagttttcac agttactgaa accactctat      2220
     gctctaactt caaaaagcat gtcattttca tgggaattag agcacgagca aatacgacag      2280
     aaggtaattt caatcctgac tagtgaacct gttcttacta tttttgatcc acaatttcct      2340
     attgagcttc atacagatgc gagtgccgat ggctatggcg caattttgtt gcacaaaatc      2400
     gaaaacaagc cacgagttat cgaatacttt agtaaacgga cttcgtcagc ggaatcgcgt      2460
     tatcactcgt atgagttgga aacacttgca gttttcaatt ctattaagca ctttcgccat      2520
     tacttgcatg gtcgacattt tatcgttttt accgattgca attctctcaa ggcatctcgc      2580
     acaaaagcgg aactgactcc aagagtccat aggtggtggt cgtacatgca atcttttgag      2640
     cttgacattc agtataggcc aggcgaacga atggctcatg tagattttct gtctcgaaat      2700
     cccatatcaa aagatcgcat ccagtcaaaa ggtacagtgg agaaacatat aaatttagca      2760
     gagattactg acaaatggtt gttagctgag cagcaacgag acgtagaaac gtcgtctatt      2820
     gtttctaaat tgcgtaacga tgatctttct gaggatttgg ccaaaacgtt cgagttaagg      2880
     gcaggaacgc tgtataggaa aattcaaaga aacggaaaga ctcgttgtct ccctatcatc      2940
     ccaaagccat ttaggtggtc agctgtaaac aatgtgcacg agtcaattat gcaccttggt      3000
     tgggaaaaaa cccttgagaa aatgtacgaa tactattggt ttgacaagat gtccaaatac      3060
     gttcgcaaat ttgtcgacaa ctgtattaca tgcagattgt caaagccccc atctggtagg      3120
     gtacaagcgg aattgcatcc cataccaaag gttaacatcc cgtggcatac agtccacatc      3180
     gacatcacag ggaagcttag tggtaaaaat gaacagaagg aatacataat cgtgtcaata      3240
     gacgccttca cgaagtttgt ctttttatct catacatcga ggctagacac cgagagctgt      3300
     attaaggcat taagatcaca aatatcattg ttcggcgtac cctctcgtct gatcgcagat      3360
     cagggacgta gtttttcaag cacagcattc cgtgatttct gttcggttca aaagatagat      3420
     ttgcatctga tcgccacggg tgctagtcgg gccaatggcc aagtagagcg agttatgagt      3480
     actctaaagt ccatgctaac agcggttgag acaggtcagg ggtcatggca agatgcttta      3540
     tgcgaaattc aactggctct taattgtacg cccaatagag tgactaaggt tagcccttta      3600
     gaactactta ttggcaaaga agcaaggccg tttggtctcg tacctgttgt tgaaaataag      3660
     aacgatgttg atattgataa agttagagaa atggctaagc aaaacatgga aaagaatgcc      3720
     aattatgata aggctagatt tgataaagat aaggctacta ttgtaagaca taaagttggt      3780
     gatcacgttt tgcttaagaa cgaagagcga catcagacaa aattagaccc taagtttaga      3840
     ggaccgtttt tagtaaccga aatattggaa ggagatcggt ataaacttaa ggcactaact      3900
     aataatagaa catataaata ttctcacgaa tttttgaggc gtatgcctga gaaggggatt      3960
     accacggagt tggatgatga gtgtgatgat gaagaaatca cagaactaaa tgatgaagtc      4020
     agtgatgaag atgccacaga tcaagccggc gagggctgtg atcttgaaat agaataaaga      4080
     cctttccgga tcggttccat gtttcatgac tttctgtaga ggtgagcgcc cgagttatgt      4140
     ggttctccat ttgctgcatt aatattgaaa ttttggtaat gatcggacgt cagttatttg      4200
     gccggcttat aaattaaact gtgagctatt tgcgatggcc ggtttgtctg gatataagct      4260
     gtgggctaaa ttaacttgtt tattggctgg ccagtttatt ttgttaatga ctgtgtgcta      4320
     gttgttggca tgatttttgt aaatgaaatg aagaatatgg tcgccttatg aaagaaaagg      4380
     ctgaataatt ttaattgttt gaatttaagt tggtggtaat ccgaatctca tggcaaacgt      4440
     tgtataagag taagaaataa tttgttcaat ttttattaag aagaaaaatg tatttttgcg      4500
     aaacctgctt gaatttgaat ttgtattaaa aggaaaataa taataataat aataagagga      4560
     tattttgtaa aacctttata ttgtaaactc acgaggacgt gagataggtc aggaaggccg      4620
//
ID   Gypsy-59_DEl-LTR repbase;    DNA;    INV; 324 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_DEl-I;
KW   Gypsy-59_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-324
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7057-7057 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 324 BP; 92 A; 60 C; 80 G; 92 T; 0 other;
     tgtcgcagaa taatttaaac attcaaatta taacgattat ttgttggtac acatttgttt        60
     tatttctttg tggttcccct ttctttcgtg cgaggcagat acatagttct gtcaacgtag       120
     tctggccgtg ggcatgagtg agacagatag tgctcgtcat aactcaccac actgtgcgtg       180
     tgtattggag ggtgagaagg aatggaaaag ggatcgacat gaattaaaga gggagtcgag       240
     ttgtgaaatt caatcaacat gccacgcgcc agaaaacgtt tcgccgaaag tccggtcaaa       300
     gactcggata atgaatcctc gtca                                              324
//
ID   Gypsy-59_DWil-I repbase;    DNA;    INV; 5855 BP.
XX
AC   .
XX
DT   14-SEP-2011 (Rel. 17.09, Created)
DT   14-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_DWil_;
KW   Gypsy-59_DWil-LTR; Gypsy-59_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5855
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1887-1887 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3211-3639] - Reverse transcriptase
CC   Positions [4780-5256] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..1072
FT                 /product="Gypsy-59_DWil-I_2p"
FT                 /translation="MSEDLNKISTASLKSWLVALGMDTKGSKTELIGRLLE
FT                 IPEDVRGGLPLARTPDPDAIPGTSGVGTKSPQEEHQMRQLESQILQQQHDE
FT                 ITESTVMLEGLRNEIKEAKKLLESLHIAVASGDAMQERDSDRRVGAMQKRD
FT                 CNRRDENESGDEHTSKADEENDEESSERERVTEMATAMDQQNNVTRVAEQK
FT                 INNWTYAGYQMAKEMLLEYNGGPDVQNWIVQLNNVSALCELSENQRHLLCV
FT                 GKLKTNALQWLHANPKRILESVDKLLDELVMAFGSRKSKAELRRAFEARVW
FT                 RDTERFSEYFENKVKLAQHVNIEDDELLDFIIEGIPLESMRIQARVQCFDK
FT                 PNQF"
FT   CDS           2899..5643
FT                 /product="Gypsy-59_DWil-I_1p"
FT                 /translation="MKDVEINIRNVLVENFEKEMLEINLLDNAKEELVYNI
FT                 GESVDFRTRCKFVKLLEECYIGQNRPENPDFKCEMKITLENTKPFSCSPRR
FT                 LSYTEKEKLQILIDDYLQEGIIQPSNSAYASPIVLVKKKTGDLRLCIDFRK
FT                 LNKSMAKDNYPLPLIDDLLDRLAQKKVFTKLDLKNGYFHVFMDKESVKFTS
FT                 FVTPLGQYEFLRMPMGLKNAPHVFQRFINSIFDDMIRENKIILYMDDIMIA
FT                 SKNIEEHLETLKEVFKRLVRNKLELRMDKCEFMQASVKYLGYLITEEGIQA
FT                 DEKGLEAIKNYPVPDKTQAVHSFLGLCSYFRRFIKDFSIEAKPLYDLLKKD
FT                 KQFEFGENELNCFLNLKKKLMKAPVLAIYNPNDETELHCDASALGFGAVLL
FT                 QRKEDKRLHPISYFSKRTTVTEAKYHSFELETLAIIYALRRFRIYVQGKRF
FT                 RILTDCNSLTLTLNKVELNPRIARWALELQEYCYELVHRSGKQMQHVDALS
FT                 RCTNIMITEANSFETNLVICQSKDEKIQSIKKYLEEREHKLYEMRNGILYR
FT                 KTNDRRVVFYVPEDMEEHVLYKYHDELGHIGRDKMIEAIGRGYWFPNIKEK
FT                 TIKHIRNCLKCIAYSPKTGKGDGLLHSIPKGNKPFDTVHIDHYGPVDSGRS
FT                 KKHILVVVDAFTKFVRLYTTKTTNTKEVIKALGDYFRSYSRPKCIISDRGS
FT                 CFTSGEFENFMKDANIKHIKIATGSPQANGQVERINRSLGPMIAKLTEPEN
FT                 GLYWDVVIEKVEFSLNNTQHRSIKKLPAEMLFGLAQKGEVSDDLKEKLDEV
FT                 TKLDEVSDRNVENIRKQAELNQRLAQADNEKYYNNKKKVTPEYKEGDYIMV
FT                 KNFDSTAGITRKLIPKNKGPYIIAKILKNDRFLIKDVDGFQLSRNPYQGVW
FT                 SAQNIRHWIKK"
XX
SQ   Sequence 5855 BP; 2264 A; 793 C; 1259 G; 1539 T; 0 other;
     taatatcaga agtggttcaa aaatccataa aatgtcggaa gatttaaaca aaatttctac        60
     ggcaagccta aaaagttggc tggtggcttt gggaatggac accaagggtt ccaagacgga       120
     gctaataggc agactactgg aaattccgga ggatgtacgt ggaggtcttc cattagctcg       180
     aacaccagat cccgatgcca ttccaggtac aagcggcgtt ggtacaaagt caccacaaga       240
     agaacaccaa atgaggcaat tggagtctca aatcctacag caacaacatg acgaaataac       300
     cgaaagtaca gttatgttag agggactacg caacgaaata aaagaagcca agaaacttct       360
     agaaagtttg catatcgcag tcgcaagcgg cgacgccatg caagagcgag acagcgatag       420
     acgcgtcggc gccatgcaaa agcgagactg caatagacgc gacgaaaatg agagtggcga       480
     cgaacatact tcaaaagcag acgaagaaaa cgacgaagag agttcggagc gcgagcgtgt       540
     aacagagatg gcaacagcaa tggaccagca gaacaatgtg accagagtag ctgagcagaa       600
     aataaataat tggacttatg ctggctacca gatggctaag gaaatgctgc tggaatataa       660
     tggcggacca gacgtacaaa attggattgt acaattaaat aatgtgtctg cattgtgtga       720
     actcagcgag aatcaacgtc atttgctttg cgttggaaaa cttaagacca atgcactaca       780
     atggctacat gcaaacccaa aacgtatatt ggagtcagtg gacaagttgt tggacgagtt       840
     ggtgatggcg tttggttcca ggaaatcgaa agcagagttg cggcgtgctt ttgaggcccg       900
     tgtctggaga gataccgagc gattttcaga atactttgag aataaggtga agctagccca       960
     acacgtcaat attgaggacg acgagctact agatttcatc atagagggaa ttccattgga      1020
     gagcatgcgt atacaagcgc gtgtacaatg ttttgacaag ccaaaccagt tttaaagcat      1080
     ttgcggaggt ccggctgcca agtaagaagt tcgtcgagag gcaaaacagg gtacccaagg      1140
     actcgaggtg ccacaattgt aattcaagaa atcattgggc gaaggattgc ctaaaacctt      1200
     tacgtgttcg tggatcttgt tatgggtgtg gtgccaagga gcacctcata gcgcagtgcc      1260
     cgcaaaggaa gaagccaaag gacgaagtaa acaattatgt aagatatatt aaattatttt      1320
     taagagacta tattcataaa ccaatattta cagagtgcct catagattcg ggcagcgcca      1380
     tttcgtttat aaaaacatca aaagtgccta aggatgtgca gctaaatgat aattttgaaa      1440
     acttttgcgg gctaaatcaa agtccattac aaatttttgg aaaaatacaa tgttatgttt      1500
     tgaaaaattc aataaaaatt cattttgatg taatggttgt gcctgacgaa tctatgagta      1560
     gcgacttagt attgggtaga gattttatga aaaaatgtaa tttagaaatt aatccagacg      1620
     cgttgaaaat gattacgttg gaaaaaagcg aacgaaattt gttggaaaat caggaaaatt      1680
     atttagataa aatgctgaaa aatgaaaacg gaatagaaag tcaaaatttg ttagaaaatc      1740
     aagaaaatta tttaggtgaa atgctggaaa atgaaaacgg aatagaaagt caagttgtta      1800
     gtaaagatga gagaaaaatt gttagtaatg tagataaagg agaaaaaatg aaagatgtag      1860
     aaattaatat tagaaatgtg ttggtagaaa attttgagaa agaaatgtta gaaatcaatt      1920
     tattagacaa tgcaaaagaa gaacttgtat acaacatcgg tgaaagtgtt gattttagaa      1980
     ctcgatgtaa gtttgtcaaa ctgttagaag aatgctatat tgggcagaac agaccagaga      2040
     atccagattt taaatgtgaa atgaagataa ctcttgaaaa tacgaaaccc tttagttgtt      2100
     cacctagaag gttatcatat acggaaaaag agaaattaca gatattaata gatgattatt      2160
     tacaagaagg gattatacaa cccagtaatt cagcatatgc atcgccgata gttttggtca      2220
     aaaagaaaac aggagatttg cgctatgtat agactttaga aaatcgaaca aaagtatggc      2280
     taaagataac tatccattac cattaataga cgatctccta gatcgcttag cacaaaagaa      2340
     agtattcaca aaattggatt taaaaggtcc gccgacgtca aaatttgcgt ccttgaactt      2400
     gatcttcagg atcaaagtaa tgttcaaaaa gcatttggag aaacaaagaa aatattgaaa      2460
     catacgatcg gttcgagcta tacgatagac gggcagtcca ttcaagacat aaaagtccaa      2520
     attactaaat atttgaaatt tcgcgggtaa cgaagtctac aaattttgga aaaatctcta      2580
     tgttgaaatc gttgtgcctg acgaatctat gagtacgact tagtattggg tagagatttt      2640
     atgaaaaaat gtaatttaga aataatccag atgcgttgaa aatgattacg ctggaaaaaa      2700
     gcgaacgaaa tttgttggaa aatcaggaaa attatttaga taaaatgctg aaaaatgaaa      2760
     cggaatagaa agtcaaaatt tgttagaaaa tcaagaaaat tatttaggtg aaatctggaa      2820
     aatgaaaacg gaatagaaag tcaagttgtt agtaaagatg agagaaaaat tgttagtaat      2880
     gtagataaag gagaaaaaat gaaagatgta gaaattaata ttagaaatgt gttggtagaa      2940
     aattttgaga aagaaatgtt agaaatcaat ttattagaca atgcaaaaga agaacttgta      3000
     tacaacatcg gtgaaagcgt tgattttaga actcgatgta agtttgtcaa actgttagaa      3060
     gaatgctata ttgggcagaa cagaccagag aatccagatt ttaaatgtga aatgaagata      3120
     actcttgaaa atacgaaacc ctttagttgt tcacctagaa ggttatcata tacggaaaaa      3180
     gagaaattac agatattaat agatgattat ttacaagaag ggattataca acccagtaat      3240
     tcagcatatg catcgccgat agttttggtc aaaaagaaaa caggagattt gcgtctatgt      3300
     atagacttta gaaaattgaa caaaagtatg gctaaagata actatccatt accattaata      3360
     gacgatctcc tagatcgctt agcacaaaag aaagtattca caaaattgga tttaaaaaat      3420
     ggatattttc atgtgttcat ggacaaggag tcggttaaat ttacatcgtt tgtaacacca      3480
     ttaggccagt atgaatttct taggatgcca atgggattaa aaaatgcacc gcatgtgttt      3540
     caacggttta taaacagcat ttttgatgac atgattaggg aaaacaaaat tattttatat      3600
     atggatgata taatgattgc cagcaaaaat attgaggaac atttagaaac gttaaaagaa      3660
     gtattcaaga gattagtgcg gaacaaatta gagcttagaa tggacaaatg cgagtttatg      3720
     caagctagtg taaaatattt aggatattta atcacagaag agggaataca ggcggacgaa      3780
     aagggtttag aagcaataaa aaattatcca gtgccagaca agacgcaagc agttcacagc      3840
     tttttaggct tgtgttccta ttttaggaga ttcattaaag atttttcaat agaagccaag      3900
     ccgttgtatg atttattaaa gaaggataaa cagtttgaat ttggggaaaa tgagttgaat      3960
     tgttttttaa atttaaaaaa gaaattgatg aaagcacctg tattggctat ctataatcct      4020
     aacgatgaaa ctgaattaca ctgtgatgcc agtgctttag ggtttggagc agttctgctt      4080
     caaagaaaag aggataagcg gctacaccca atttcttatt tttccaaacg cactacagtg      4140
     actgaggcga aataccacag ttttgagcta gaaacactag caataatata tgcgttacgc      4200
     aggtttagaa tttatgtcca aggaaaacgt tttagaatac taacggattg taattcgttg      4260
     actttgactt taaataaagt agagcttaat ccaagaattg ctagatgggc gttagaatta      4320
     caggaatact gttacgagct agtgcataga tctggcaaac aaatgcaaca tgtagatgcg      4380
     ttgagtaggt gcacaaacat tatgatcaca gaagctaata gttttgaaac aaatttagtt      4440
     atttgccaat caaaagatga aaagattcag agtataaaaa aatatttaga agaaagggaa      4500
     cacaaactgt acgaaatgcg gaatggtata ttatatagga aaacaaatga tagaagggtt      4560
     gtattttatg taccggaaga tatggaagag catgtattat ataaatatca cgacgaatta      4620
     gggcatattg gcagggacaa aatgatagaa gcaataggaa gaggatactg gtttccaaat      4680
     ataaaggaga agacaataaa acatataaga aattgtttga aatgtatagc gtattcaccg      4740
     aaaacaggaa aaggagatgg tcttttgcat agtataccga aaggaaataa gccctttgat      4800
     acagttcaca ttgatcatta tggaccggta gattcaggaa gatcaaagaa gcatatttta      4860
     gttgttgtag atgcgtttac gaaatttgtt agattataca ccacgaaaac tacaaacact      4920
     aaagaggtca ttaaagcatt aggagattat tttcgatcat atagtagacc gaaatgtata      4980
     atatcggatc gaggcagttg ttttacatct ggagaatttg aaaatttcat gaaagacgcg      5040
     aatataaaac atataaaaat agctacggga tcgccacaag caaatggaca agtggaaagg      5100
     attaatagaa gtttaggacc tatgattgca aaactcactg aacctgagaa tggtttgtat      5160
     tgggatgtgg tcattgaaaa agtcgaattt tcgttaaaca atacacaaca tcgtagcatc      5220
     aaaaaattgc ctgctgagat gctttttggt ttagcacaaa aaggagaggt tagtgatgat      5280
     ttgaaagaaa agttagacga agtgacaaaa ttagacgaag tcagtgacag aaatgtagaa      5340
     aatattagaa aacaggcaga attaaatcaa cggttagctc aggccgataa tgaaaaatac      5400
     tataacaata aaaagaaagt tacaccggaa tataaagagg gtgattatat aatggttaaa      5460
     aattttgata gtaccgcagg aataacgagg aagttaatac cgaaaaataa agggccgtat      5520
     ataatagcaa aaattttgaa aaatgacagg tttttaataa aagatgtgga tggatttcag      5580
     ttatcgcgca atccttatca aggcgtctgg agtgctcaga atattagaca ttggataaaa      5640
     aagtaaatag tggaaattgt tagcaaacta tattatatta tatatatata tacatcggta      5700
     ctaggtttaa gaatataatt aaattgtaaa tatttcacta tagaataaga aaataatcaa      5760
     attgtaaatt tatgttaacg ttacatgaca aagttcgtca gaataataaa gtaaagcaga      5820
     gattgaggac aatcttaaag tcaggacggc cgagt                                 5855
//
ID   Gypsy-59_DWil-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   14-SEP-2011 (Rel. 17.09, Created)
DT   14-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_DWil_;
KW   Gypsy-59_DWil-I; Gypsy-59_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-286
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1888-1888 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 286 BP; 93 A; 62 C; 46 G; 82 T; 3 other;
     tgtagtaggc ccagtgtcca aagcataaga aacagtggta ttgcaaccac tgtttaagca        60
     ccgttataac tattgatatt gattcctcac tctctgattt cataaagcgt ctctcgctct       120
     gccttgcaag cgaagatgct ctctttattt gttgaatatc taactctcta actactctgt       180
     ctgcgagcag agagtcagtt cgtaagcaww awccaaagcg atcagatcaa ataaataaag       240
     caacgagcaa ttaacaagta acaaatacat attatttata ctacca                      286
//
ID   Gypsy-59_LMi-I repbase;    DNA;    INV; 8037 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8037
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1021..1101,1038..1496,1597..2007,1953..2462,
FT                 2435..2710,2762..3034,3038..3310,3294..4133,
FT                 4221..4787,4791..5234,5357..6295,6306..6560,
FT                 6579..6797,6769..7389)
FT                 /product="Gypsy-59_LMi-I_1p"
FT                 /translation="MQHHFREAFEAPCARLNWKAVLHSYGSGSVRGTMRAS
FT                 ELEGSLALIWKLSRAVFIQGIYDERIKTIVCAWGEQLTLAEAIEIALTEES
FT                 AIASGREKMVTRGSAAALWNEKKATKCFVCGKPGHMARDCKLPKRIRRVDL
FT                 WEQRIRGRKRARSDWGSARSVAKQATMAHVRNRRRGHVITQEGSRLALARK
FT                 NINSRLRKRNEFIEMECLEGTDNCLMFLVDSGAQVSLIRRNSLRSDRSFNT
FT                 ANGIRIRGIANTVARTEGTVLVLTESGMHVRHCFHVIGEDVDLPFDGLVGR
FT                 DFFKENEVVIDLAPEACGSVENRWRSRNRLGTGSLWIRGEQMEMKTERECE
FT                 LRTVQLGTKSQGLAYRCGNNEKVGSFRRSSVTQRKTRPNRKTESQGDIRTE
FT                 SARQLREKFRQTRNMYSGKVKKERQTEVRGNAEADHCGYRREQKLSQDSYC
FT                 EENNSRTSRGTSVQNTGSSERNERGYHSKTGNNERVFIYLRRRKGVYLPEA
FT                 LVRIDSGKCITNTTEERYPRCPLVVAETVPILELSTEARRVNHISKEKLQL
FT                 MARISTLKKNIQLSHLNEEAESGNYRAVYHVQAQNKIAPEAEGRVICSRPY
FT                 RIPQAQKEALQREIEKMLVDDIIVPSKSGWNFPLILLPKKKDASEKQKWCK
FT                 SRLLKNIAKFSLSVAKNRRNSWSRQSQILLDPGFSQGLSSGLIRREGSRKD
FT                 GVQHALWALRIQTNAYGSKTAPSTFQKLMNSVLTGLQGDKLFIYLDDVVIF
FT                 GPSLEETMCGRKQCAADRVFERLRRHNLKLQVDKCEFLRKEVCYLGHILSA
FT                 EGLKPDPEKVKVIKEYPQPRTTKELKAYLGLVDTPAFPKHFSKIAKPLHEL
FT                 LKKEVPYTWGVEQENAFQHLKEKLISPPILQYPDFDKDFIITTDASQTSIG
FT                 AVLSQGKVXSDXPVAYASRXLNKAERGYSTIEREMLAICWAVKYFRPYVFG
FT                 RKFLICXDHKPXTWVGXISDPXSRLMKFRLKSXTIGSCVRVANGIKSPXHS
FT                 REXEVRAAGEQPEGDGSPGQDAAPGPREGRRTSSGRTVFDRVSATTVKSIV
FT                 KDAGSGAKRGRHISDQEKATILKQFHDSPIGGHQGIGRTYERIKKYRIWNG
FT                 MKKDIEEYIRRCESCQKNKLTRKHIKMPLEITKTPEHVFERCDIDLVGPLT
FT                 QTDRGNKYILTFQDALTKFIVAEPIDRQDADTVARVLVEQIILRYGIPSVL
FT                 LSDMGSNFVSETMKRVCKLLIEKIQTTSYHPQSNGALERSHRTLTEMLRHF
FT                 VNRSQRDWDDWVRYAVFVYNTTPHSATGYTPHELFFGRVCNIPGILQKDPA
FT                 GLLYNYDDYVAELRECMQEMHHCARQQNAHCKIKNTTIEQRIQNNFVMVTR
FT                 SCCTTRVFDAAGRGSFQMSVSGYIMGVILLLLCIEPAKQEPYTQITNFQSS
FT                 PGLYYDNMGKVKVYSVTWRIVSYFNLMELKEKFENTKVLARRANVYCSERL
FT                 ALLNMSTTECKSASLALHWHIGKIEKAQSLIGQLARHESRIKKRGILNFVG
FT                 EVSKILFGTLDEDDATYFKAKIDVLEAEQKQLLRLSKEQVTIVKATLTSFN
FT                 RTVNSIAKNEEIITXGMKQLSKHIVEYENSTDRRLQRAVILITLNEQLIQL
FT                 MGIFNELEREYDMLIAAIVNAQKGILEXHLINPVQIVKYLELIKDDIKDKR
FT                 FPVDLTADNGYRLIRIIDLDVFHLGYVLNILLVEDDVYNLYRLLPLLLEVD
FT                 GTKHLFMYIAPERELLLIDDAKRQYAKLSSEQLKCKTVDQSLRICKQVFLL
FT                 LFTRSNAATYQRNSCVQKLIVLNESLWTPLSNNEWLFVAPVDEGITVICHE
FT                 GKPMDFMLRGTGKFKFLGKCRGYTAKMGNVVGTPLKCDTIGPCNPNAVQSS
FT                 DIVPNMTLELDCCIVNNEKRNISELKLDLPIYSVGRQLDDLTAAGHKLDEL
FT                 KDEIEYQERTVFSSLPIYHFSLLSYIGSSVVIIVIICCICRYCKCCKDCFK
FT                 FVFKTMGDDCCRKICVKNTIVNQCPDRSVVRYHPSRRMSTDSDDIVLDRTF
FT                 VPARPVQSDARYVREDRATPSRVITKTDRR"
XX
SQ   Sequence 8037 BP; 2611 A; 1451 C; 2053 G; 1907 T; 15 other;
     tatgggagaa taatttggtg tcagttatgt ggggttactc atgaaatagc ttgttgtaat        60
     gcttcaattt atcggaatag gtcgcccctc tggaatagcg aacctactca gcccaatgtc       120
     acgcaaaacg acagaacggc tttgagaact atttttgcaa cactttaaca gtagtacgca       180
     tgccagcagc agaaccagta gccaggagag cgagcagtca ccttgctgtc atggaggcga       240
     tgggctgttt tgattgttcg cacccgggaa cggaaggcag ttgcagaaga aagaagaaga       300
     agccaggccc agtccagttc tagaacggtg tcttggggac aagacggaag gcggccaggg       360
     gcggtgcaat ctcagtagga gcggacaggc ggcgccgggg gctgaggcgg acctcccaca       420
     ggcggcacag ggcaggaggc cggcagcagc ggcaagcggc acgggcgcag ctgctcacgg       480
     ggcagctgac agccggtggc gtaaggcaga catgtcagca gctgctcgac agcggtgaca       540
     cggacggcgg ccaggggcgc gcagcggctc ctgcggcagc actcgagagc cacggtgagt       600
     gaagcactta gcaggcatgt cgaccagcag ggagaacgta tccagtacta gcactgatgc       660
     gcaagagtca cccattagga atttcattag cgtattgaag cactcaaatt aatacctcag       720
     tcttttgacg gtactaaaaa tactctaaat gaatttcttg ataattgtga tatcgctttc       780
     gagctcatca atccagaaca gcatgagata ttattaaaat ttgttaaaac taaaataatt       840
     ggctcagcac atagcaagtt attagttcgt gatctgacag ccacatggca agatgttcgt       900
     gccatacttg tcgagaacta tgccagcaaa aggacactcg atttctatgc atgccaattg       960
     tttgcaagtc gacaagaaag aggggaaagc attgcacaat gggggtcgag gttggatact      1020
     atgcagcatc actttaggga agcgttcgag gcaccatgcg cgcgtctgaa ttggaaggca      1080
     gtcttgcact catatggaag ctgagtagag ctgtttttat tcagggcatt tatgatgaaa      1140
     ggataaaaac tatagtatgt gcatggggtg aacagttaac tttggccgaa gctatagaaa      1200
     tcgctctgac agaggaaagt gcgatagctt ctgggcgtga aaagatggtc acgcgaggca      1260
     gtgcagcggc actgtggaac gaaaagaagg ccacaaagtg tttcgtatgt gggaagccag      1320
     gccacatggc acgagactgt aaattaccca aaagaatacg gagggtagac ctgtgggaac      1380
     agagaatacg ggggaggaaa cgggcacgtt ccgactgggg aagtgctcgc agtgtagcaa      1440
     agcaagccac aatggcccat gtgcgcaatc gcagacgggg gcatgttata actcaataga      1500
     acaggccatt ttgctagaaa ctgtccagag aaagctagcc aggcatggaa cacacagagg      1560
     agatataaaa gtcaggaaaa ctaaatagag gcgtgagaag gcagtcgcct tgcccttgcc      1620
     aggaaaaata ttaacagtcg gctgcgaaaa agaaatgaat ttattgaaat ggaatgcctg      1680
     gaaggcacgg ataattgtct gatgtttctc gttgatagtg gagcgcaggt aagtttgatc      1740
     cgaagaaata gtttaaggag tgacagaagt tttaatacgg caaatggtat taggattcgg      1800
     ggaatcgcta ataccgtggc gagaaccgag ggaactgtcc tcgtactaac ggaaagcggg      1860
     atgcatgtga ggcactgctt tcacgtaatt ggggaagatg tcgatcttcc gtttgacggg      1920
     ttggtgggcc gagacttttt caaagaaaat gaagtcgtaa tagacttggc accggaagcc      1980
     tgtggatccg tggagaacag atggagatga agacggagcg agagtgcgag ctccgcactg      2040
     tgcagttagg tactaaaagt cagggacttg cttatcgatg tgggaataac gaaaaggtag      2100
     gatcattcag aagaagctct gtcacacaac gaaagacgcg gccgaatcgg aagacggagt      2160
     cgcagggtga tatccgcaca gaaagtgcta gacagctacg ggaaaaattt cgacaaacga      2220
     gaaatatgta ctcaggcaag gtcaaaaaag agcggcaaac agaagttcga ggaaatgcgg      2280
     aagcagacca ttgcggttac aggagagaac aaaaattgtc gcaagacagt tactgtgaag      2340
     agaataacag taggacctcg agaggaacga gtgtgcagaa taccggtagt agcgaacgga      2400
     atgagcgagg ctatcattcc aaaacaggaa ataacgaaag ggtgtttatc tacctgaggc      2460
     gttagtccga atagattcgg gaaaatgtat aacgaacact acagaggaga ggtatcctag      2520
     gtgtccacta gtggtagcag aaacagttcc aatattggag ttgtcaacag aggcacgtag      2580
     agtgaaccat atcagtaaag aaaaactgca gttaatggca agaataagta cattgaagaa      2640
     gaatatacag ttgagtcact tgaatgaaga agcagaaagc ggcaattatc gagctgtgta      2700
     ccatgtacag tgatgtcttc cacttgcctg gagataaact atcatacacc gatagcgtta      2760
     ggcacagaat aaaattgctc cggaggcaga aggtagagtc atatgttcgc gaccctaccg      2820
     aataccccaa gcccaaaaag aggcgctcca gcgggaaatc gaaaagatgt tagtcgatga      2880
     catcatagtt cccagcaaaa gtggctggaa ctttccacta atactcctgc caaagaaaaa      2940
     ggatgctagc gaaaagcaaa aatggtgtaa gtcgcgacta ctgaaaaata tcgctaaatt      3000
     cagtttatcc gttgccaaga atagacgaaa ttcttgatgg tctaggcaaa gccaaatact      3060
     tctcgaccct ggatttagcc aagggctatc atcaggtctt attagacgag aaggatcgag      3120
     aaaagacggc gttcagcacg ccttatgggc actacgaata caaacgaatg cctatgggtc      3180
     taagacagct cctagtactt ttcagaagtt aatgaattct gttttgacag ggttacaagg      3240
     cgataagtta tttatatatt tggatgatgt ggtgatattt ggaccctcat tagaggaaac      3300
     aatgtgcggc tgacagagta tttgagagac tcagacggca caatttgaag ttgcaggtgg      3360
     acaagtgtga gtttttgcga aaagaagttt gctacttggg tcatattcta tcggctgaag      3420
     gactgaagcc agacccagag aaagtcaagg taataaagga gtatccccaa cctagaacaa      3480
     caaaggagct aaaggcgtat ttaggtctcg tggatactcc ggcgtttcct aagcatttca      3540
     gcaagattgc taagccattg catgagttgc tgaagaaaga agtcccatac acctggggtg      3600
     ttgaacaaga aaacgctttt cagcacttga aagaaaagct gattagtcca cctatattgc      3660
     agtatccgga ctttgataaa gattttatta tcactacaga cgcatcccaa acttctatcg      3720
     gagctgtact aagtcaagga aaagtcwgaa gcgacktacc tgttgcatac gcctcgagaa      3780
     wgctgaataa agcggaaaga gggtacagca caattgaaag ggagatgttg gccatttgtt      3840
     gggccgtaaa gtacttcaga ccctacgtat ttggcagaaa gtttctgata tgtwcagatc      3900
     ataagccatt macwtgggta ggcmgtatat cagacccttm atctagattg atgaaattca      3960
     ggctaaagag tamgactatc ggatcctgtg taagagtggc aaacggaatc aagtcgccga      4020
     mgcactctcg agagwgagag gtcagggcgg cgggtgagca accggaaggc gacggtagcc      4080
     cgggtcagga cgcggcgccg gggccgcgcg agggtcggag aacctcaagt gggtgacgac      4140
     agccgggcgt tgactcaagt agcaggcggc aggcgaggcg gccgaggacg gggcgcgaac      4200
     agctgatccg agaacagtag aggactgttt tcgacagggt gtcagccacg actgtgaaga      4260
     gcatagtcaa ggacgcgggt agcggagcca agagaggcag acatattagt gaccaagaaa      4320
     aagctaccat acttaaacag tttcacgatt ctccaattgg aggccaccag ggcataggac      4380
     ggacgtatga acgaatcaaa aaataccgga tatggaatgg tatgaaaaag gatattgagg      4440
     agtatatccg aaggtgtgag agttgtcaaa agaacaagct cacaaggaaa cacataaaaa      4500
     tgccactgga gatcacgaaa acgccagaac atgttttcga acggtgtgat attgatttag      4560
     taggtccgtt gacccaaact gacagaggaa acaaatatat tctcacattt caagatgckc      4620
     tgaccaagtt tatagttgct gaaccaatag accgacaaga tgctgacaca gtagcgcgag      4680
     tattagttga acagatcata ttgaggtacg gaatcccatc tgtgttacta agtgatatgg      4740
     gaagtaactt cgttagcgaa acaatgaaaa gagtctgtaa acttttatga atagaaaaaa      4800
     tacagacaac gagctaccat ccccaatcaa atggagctct agaaaggtcg catcgaacat      4860
     tgacagagat gttgcgccat ttcgtgaata gatcccagag agattgggac gactgggtta      4920
     ggtatgccgt ttttgtgtac aatacgacac ctcacagtgc gacagggtac acgccacacg      4980
     aattattctt tggccgggta tgtaatattc cagggatact acaaaaagat ccagctggac      5040
     tattgtacaa ttacgatgat tatgtggcag aactgagaga gtgcatgcaa gagatgcatc      5100
     attgtgcaag acagcagaat gcacactgta aaataaagaa tactacgatc gaacaaagaa      5160
     tccaaaacaa tttcgttatg gtgacaaggt cttgctgtac gacgagagtg ttcgacgcgg      5220
     caggtcgcgg aagttagaca cacagtggcg aggtcctttc acagtagtgc gaacgaaagg      5280
     acccaatgta gtaatatgtt taaagagaaa taagtacctc acggttcatg ccaacagact      5340
     gaaggaattt ttctaattcc agatgtcggt gtcgggctac atcatgggtg ttatcctsct      5400
     gctcctgtgc atcgaaccag caaaacaaga accttacacg cagataacga acttccagtc      5460
     gtcacccgga ctctattacg ataatatggg aaaagtgaaa gtctacagcg taacttggcg      5520
     cattgtgagt tacttcaatt taatggaact gaaagagaaa tttgaaaaca cgaaggttct      5580
     tgcgaggcga gcgaatgtct attgctctga gagattggcg ttattaaata tgagcacaac      5640
     agaatgcaaa agtgcaagcc ttgcactaca ctggcacatt ggcaaaatcg aaaaagcgca      5700
     gagtctaatt ggacagttag cacgacatga gtcccgtata aagaagcgag ggattctgaa      5760
     ctttgtaggg gaagtaagta aaatactgtt cggaacatta gatgaggatg acgccacata      5820
     ctttaaagct aagatagatg tactagaagc agaacaaaag cagctactca gactttcaaa      5880
     ggagcaagtt accatagtta aagcaacttt aactagtttt aatcgaacgg ttaactccat      5940
     agcaaagaac gaagaaatta tcacgcawgg aatgaaacaa ttgagcaaac acatagtaga      6000
     atatgaaaat agtactgata gacggttgca gagggctgta atattgatca ctctcaatga      6060
     gcaattaata caactaatgg gcattttcaa tgaattagag cgggaatacg atatgctaat      6120
     agcggcgata gttaatgcac agaagggtat tctggagcmg catctgatca atccagttca      6180
     gatagttaag tatcttgagc tgataaaaga tgacatcaag gacaaacggt tccctgtaga      6240
     tctgacagca gacaacggat accggttgat cagaatcatt gatctagatg ttttctagct      6300
     ggtaacatct tggttacgtg ttaaatattc tgctagtgga ggacgatgtg tacaacctgt      6360
     ataggttact accgttgctg ttggaagtag acggaacgaa acatctattt atgtatattg      6420
     ccccagagag agagctacta cttattgatg atgcaaagcg gcagtatgcg aagttaagta      6480
     gcgagcaact gaaatgcaaa acagtagacc aaagcctcag aatatgcaaa caggtatttc      6540
     tccttctgtt cacacgatca tgaacagtgt gaggctaaaa tgctgcaacc tatcagagaa      6600
     attcctgcgt gcaaaagctt attgtattaa acgaaagtct atggacacct ctaagtaata      6660
     atgaatggtt atttgttgct ccagttgacg aagggattac cgtcatctgt cacgaaggaa      6720
     aacccatgga ttttatgctc agaggaacag gaaagttcaa attcttaggg aaatgtcgtg      6780
     ggtacaccgc taaaatgtga tacaatcgga ccatgtaatc cgaacgctgt ccagagtagt      6840
     gatattgtgc ctaatatgac tttggaatta gactgctgca tagtaaacaa cgagaaaaga      6900
     aatataagtg aactgaagtt agatttgcca atctattcgg tgggtagaca gttagatgac      6960
     ctaacagcgg caggtcataa gttggatgaa ctgaaagacg aaatagagta tcaagaaaga      7020
     actgtcttta gtagtttacc catatatcat ttttctttat tgagttacat agggtctagt      7080
     gttgtgatta tagtgattat atgttgtata tgcaggtact gcaaatgttg taaagattgt      7140
     tttaaatttg tatttaaaac aatgggtgac gattgctgca gaaaaatatg tgttaaaaac      7200
     actattgtta accagtgccc agacagatcc gtagtcagat atcatcctag tcgaaggatg      7260
     tctacggaca gtgatgacat agtgcttgac agaacctttg tgcctgctag accagtgcaa      7320
     agtgatgctc gatacgtaag agaagataga gcaacaccat cacgtgtaat aacaaaaaca      7380
     gacagacggt aaaaattgaa gctgcaactt gttataaagt aagagtgaaa agtattgtaa      7440
     attgttttat gataaaattg taatgaggtc atgaatttat tgtagaatta actgtaaatg      7500
     aatatatcca gaattgagga gtaacaatgg tgtgtaatca taaagtataa tgtaaaatta      7560
     ttctttgtgg aaggtagctg ataaatgaca atgttgtgta ctaaagaaaa agtatctaca      7620
     taaagtgtgc tcttaaaatt cttgtataaa cccatgtgaa atgtaaagta agcaatgtaa      7680
     gtgtatatta catacatgtt catttcatct tggactacta acaaatgatg taaaagtctg      7740
     aaggattcta aacagattgt acttgagatt atagatgtgt gatagtaggt gaaagtggaa      7800
     gtacaaagta ttttcttgtg tttttctttc aggaaaagac tgaattatta tgtaagttgt      7860
     agaattggtt ttgtgttttc tttcaggaaa actgaattat tatgtaacac ttatgtagac      7920
     attgtattgt gttttctttc atgaaaagac tgatttacta tgtaagctta aaattttgta      7980
     aaaaaatttg tagtgctgag ggcagcgcct acaaattttt ccctatgggg ggagagg         8037
//
ID   Gypsy-59_LMi-LTR repbase;    DNA;    INV; 629 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-629
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 629 BP; 151 A; 174 C; 163 G; 141 T; 0 other;
     tgtcatgtaa ttagaattcg caacgtcaga aatgtattta acagaagcca gaacgactaa        60
     tttcagtaga aagtacgctt ggtacaaagg cgacgcctca ggaagggcgt tggcttaggc       120
     gtggcaggaa gctcacacaa agaacaagga ggcgtcacat ggctcacgtg ggaagcttct       180
     agaagccgag gggcttcgga cgtgcgcata ccttgcctta tatggtcaca aggagcggcc       240
     ggaaggcggt gccgagcggg tgcccacagg gtatataagt cgcggcacgc cacccgctcg       300
     gggagatccg acagttcacg cgtcctagca gtcacgggac ggacctccgt gtcgcccagg       360
     cccggggcct ggacttagca gttttcgctc tggcttctgc ctgctattca acttagccgc       420
     gtacctccct ccaatgtact cagtaataac ttccgctcag acgagcagta aagcttttta       480
     actcaagtat tgactctttt tgttcatatt cccgaccgag ttccgaaact cctaattttc       540
     cttcagttag cctctccacg attgctgact gaacggacca gctcaactcc ctagtgtcag       600
     taaacgtcta caccgctcgg gacgcgaca                                         629
//
ID   Gypsy-59_SpEx-I repbase;    DNA;    INV; 5274 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5274
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4126-4126 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           684..1544
FT                 /product="Gypsy-59_SpEx-I_1p"
FT                 /translation="MTDKSQEIFHDLAGSGSEQETSPTHPPIINRVTIRVP
FT                 PFWPDKPGLWFASLEAQFHINRVTQELTKYYYAVSQLDTKSAGEVEDIITA
FT                 PPSHQPYTTLKTALINRFSDSYEEKIKKVLEKEDIGDRRPSSFLRHLISLA
FT                 GTSVPEQLIQTIWLNRLPSTYQGILIAQKQASLQDLGELADKLNEIGPQPA
FT                 SIHSAENSGPANDDMGEQLRALQQQVANLTLAVSSLTKNSDHRRSFNRPRS
FT                 RSRSLSRLCWYHQRFAANAAKCTPPCSWTNNSATSTNNPGNTKSNQ"
FT   CDS           1517..3496
FT                 /product="Gypsy-59_SpEx-I_2p"
FT                 /translation="QPGKHQKQSVMATSDCSQVSRRLFVTDRYSNRRFLVD
FT                 TGSDLSCLPRHHHKGKTEPLPYELIAANGTKISTFGLVQLKLNLGLRRDFD
FT                 WKFVVAEVGTPIIGSDFLAHYNLLPDCARAKLRDDITGLCTDTDIVSFSQP
FT                 SIKLIHSXASPFAHILAEFPSVSRPSGAPKDPKHTTVHYIKTTDGPPISAR
FT                 PRRLAPQKLRAAQKEFEEMVRVGTARPSSSPWSSPLHLALKKDETYRPCGD
FT                 YRALNARTIPDRYPVRHVGDFSHNLSGCAIFSTLDLVKAYQQIPVNPADIC
FT                 KTAIITPFGLYEFPYMTFGLRNAGQTFQRFIDEVVRGLDFCFAYVDDILVY
FT                 SKDAKEHTEHLRLLLSRLQEYGVVINPAKCVFGANEVSFLGYRINATGTYP
FT                 PEDRIRALSDFPLPETVQGVRRFLGMINYYRRFLPSAAKYQAPLIDAVAAT
FT                 NSKGAKPFPWTPELRLCFESCKKSLSDATLLFHPASEAHLGLFTDASSVHI
FT                 GACLQQKVGDAWQPLAYFSKKLTTKQAGWPAYYRELLAVYESVQHFRHILE
FT                 VQHATIYTDHKPLVYAFAQRREKLPPIQLNQLTFISQFTTDVQYVKGTDNI
FT                 VADAMSRIDSISLEPDYEALAKSQEQDDELKELTFFFFVFPKNGEGQHSRD
FT                 QYSHFLRHFNR"
FT   CDS           3402..4727
FT                 /product="Gypsy-59_SpEx-I_3p"
FT                 /translation="KSSRSSSSSSLKMAKVNIPGTNTHIFCDISTGKPRPY
FT                 LTPPFRRAAYNKLHGLSHPGVRATVRLLSDRFVWPNIKKDCRLWAQSCLQC
FT                 QRSKISRHISSPLSSFXNPSHRFRHIHIDIIGPLPHSDNFTYCLTAVDRYT
FT                 RWPEAWPMSSITAEDVADTLVTGWISRFGVPSTITTDQGRQFESVLFQRLM
FT                 NVCATKRVRTTSYHPCANGMVERMHRQLKAALMCHSHSWSKSLPIVLLGMR
FT                 TALKEDLNTSSAELVYGEPLRLPGELIMPSGDPRSLSDTSDFVTELRSRME
FT                 ALRPIPASRHARPSSFIFKDLASATHVMLRDDTVRRPLQPPYTGPHRILGR
FT                 RDKTLTLDVNGRETTVSIDRIKPAYLIPDTGVSTNKHHFPSHQPPSPPIPA
FT                 PIASPTSGTHQSILPPTQASSPPDQASLPAPATTRAGRRVKFRDILDL"
XX
SQ   Sequence 5274 BP; 1423 A; 1367 C; 1022 G; 1460 T; 2 other;
     ttggtgaccc cgacgatcca agaaaacttc agactgggga gttacctact agagtcgtca        60
     tcaagaccta ttggacaaga cctgacgcca cggcacctac acgcaagttg atgcctctcc       120
     gcgcccgtcg tcacccatcg ctgcctatcg ctttctgttg ctgtccatcg ccgtccttgt       180
     ccatcgctgc ctgtcgctgt tcgtcgctgc ctgccgcatc acgtccctaa gaaaacctta       240
     ctggcaccgc cgcggcatcc gccagtgctg ctcgttggtc agtggataca cttactctcc       300
     atcaagtaaa gcggtcagtg tgtgtttgta ccatatattt tactacaatt actataagca       360
     caatgtgtgt ttaaagtgcg gcttaatcaa gatacaaata ctggacagtt cataccatag       420
     cttgcattct tgcatattgc attggacata ataattaccc acccattata acattggtgt       480
     tagctgctaa gaaaaactat taggtattac attttgtttg gtctcgcttg aatgtttgca       540
     ttgcatatgt atagtttatt aacactgctt actttttttc aataactcac tatatactta       600
     actgttacta tactgttttg gagtgatttg tatgtctaca catttcctca acttagttct       660
     taatttaaaa tataaaacaa aaaatgactg ataaatctca ggaaatattc catgacctag       720
     ctggctctgg cagtgaacag gaaacatcac ctacacaccc acctatcatt aacagagtaa       780
     ctatccgtgt tcccccattc tggccggaca agcccggttt gtggtttgcc agccttgagg       840
     cacagttcca tattaacagg gttacacaag aattaaccaa atattattat gctgtcagtc       900
     aacttgacac taaatctgct ggtgaggtgg aagatattat aaccgcacca ccttctcacc       960
     aaccatacac tacattaaaa acagcgttaa ttaaccgttt ctcagattcc tatgaagaaa      1020
     aaataaaaaa agtattagaa aaggaagaca ttggagatcg gagaccatca tcttttctta      1080
     ggcacctaat atctttagct ggcacctcag ttccagaaca acttatacaa actatttggc      1140
     tcaataggtt acctagtact tatcaaggaa tactgatagc ccaaaaacag gcctcactcc      1200
     aggatcttgg tgaattagcc gataaactaa atgaaattgg cccacaacct gcaagtatcc      1260
     atagcgcaga aaattctggt ccagcaaatg atgacatggg agagcagctt cgggcactgc      1320
     aacagcaagt ggccaacctg acacttgcgg tttcctctct caccaaaaat agtgaccaca      1380
     gacggtcttt taaccgtcct cgcagtcgtt cacgctcgct ttcccggctt tgctggtacc      1440
     accagcggtt tgcagcgaat gctgcgaaat gcactccacc atgtagttgg accaataata      1500
     gtgcaacttc cactaacaac ccgggaaaca ccaaaagcaa tcagtgatgg cgacatctga      1560
     ttgctcacag gtgagtcgcc gtttgttcgt tacggaccgg tattcaaatc gtcgatttct      1620
     cgttgatact ggttccgacc tttcctgtct accgcgtcat catcataaag gcaaaacaga      1680
     gcccctccca tacgaattaa tcgcggccaa cggcacaaaa attagtacat tcggtctcgt      1740
     ccaattaaaa ttaaatctag ggttacgtcg cgatttcgat tggaaatttg ttgtggccga      1800
     agtaggcacc cccattatcg gctcagattt tctggcccac tataatttat taccagattg      1860
     cgcccgggca aaattgcgag acgacataac cggcctatgc actgacactg acatcgtttc      1920
     cttcagccaa cccagtatta aactgatcca ctcacmtgcc tctcccttcg cgcacatatt      1980
     agctgaattc cctagtgtct caagaccttc tggggctccc aaggatccta agcacaccac      2040
     agtgcattac attaaaacca ccgatggacc accgatttca gcacgacctc gtcgtctagc      2100
     tcctcagaaa ttacgggctg cccaaaaaga atttgaagaa atggtacgag taggtacggc      2160
     caggccttcc agcagccctt ggtcttctcc cttacacctg gcgctgaaaa aggacgagac      2220
     ctaccgcccc tgtggtgact acagggctct gaacgcccgc accattccag accgctatcc      2280
     tgtccgtcac gtaggggatt ttagccataa cctctccggc tgcgcaatat ttagtacttt      2340
     agatcttgta aaagcttacc aacaaatccc cgtcaatcca gcagatattt gcaaaacagc      2400
     cattataaca cccttcggat tatatgagtt cccctacatg accttcggcc tccgtaacgc      2460
     tggtcaaacc tttcagcgtt tcatagacga agtggtgcga ggtttagatt tctgttttgc      2520
     atacgtcgat gacatcctcg tgtattccaa ggatgccaag gagcacacag aacatctcag      2580
     gctcttgctc agccgcctgc aggagtacgg agtagtcatt aaccccgcaa aatgcgtttt      2640
     tggggcaaat gaggtgtcct ttttagggta ccgcattaat gctacgggca cgtatcctcc      2700
     cgaagaccgc atccgcgctt tgagtgattt ccctttgccc gagacagtac aaggtgtgcg      2760
     tagattccta ggcatgataa actactatcg tagattcttg cccagcgccg ccaagtacca      2820
     agcacccctt attgatgcag tggccgcgac aaatagcaaa ggcgccaaac ccttcccctg      2880
     gacacctgaa cttcgtctat gctttgagag ttgcaagaaa agtctgtctg atgccacgct      2940
     tttatttcat ccagcatccg aggctcactt gggtttgttc actgatgcat caagcgtgca      3000
     cattggcgca tgtctgcaac agaaagttgg tgatgcttgg caacctcttg cttatttcag      3060
     caagaaactc acgacgaagc aggcggggtg gccggcatac taccgagaac tcctggctgt      3120
     gtacgaaagc gttcaacatt ttcgacacat attagaggtt caacatgcca cgatttacac      3180
     cgaccataag ccacttgttt atgcgttcgc acagcgccgt gaaaaattac cacccatcca      3240
     actcaaccaa cttacgttca taagtcagtt cactactgac gttcaatatg tcaagggcac      3300
     tgacaatata gttgcggacg ctatgtctcg cattgattca atatccttag agcccgatta      3360
     tgaagccctg gcaaaatccc aagaacaaga cgatgagctg aaagagctca cgttcttctt      3420
     cttcgtcttc cctaaaaatg gcgaaggtca acattcccgg gaccaatact cacattttct      3480
     gcgacatttc aacaggtaaa cctcgcccgt atcttactcc acctttccgt cgagcagctt      3540
     acaacaaact tcacggacta agccaccctg gagtacgagc aacagttcgt ttgttgtctg      3600
     accgtttcgt atggcctaat attaaaaaag actgccgttt atgggcccaa tcctgtttgc      3660
     aatgccaacg tagcaagatc agcagacata tttcatcacc gctttcatcc tttwctaacc      3720
     catcccacag atttcgccat atccacatag acataattgg tcctcttcca cactccgata      3780
     acttcacgta ctgtctcacc gcagtcgaca ggtacacaag gtggcccgag gcatggccta      3840
     tgtcctctat cacggcggaa gacgtggctg acacgttagt aactggctgg atatcccgtt      3900
     ttggagtacc aagcactata acgaccgatc agggacgtca attcgaatcc gttttgtttc      3960
     agcgcctcat gaacgtgtgc gcaacaaaac gggttcgaac aaccagttac cacccttgtg      4020
     ctaatggcat ggtagaacgc atgcaccgcc aactcaaagc tgctttaatg tgccactccc      4080
     actcctggtc taagtcactt cccatagtac tcctgggcat gaggacagcg ctcaaagagg      4140
     acttaaacac ctcgtccgct gagcttgtct atggagagcc gctccgttta cccggagaac      4200
     taatcatgcc gtcaggggat cccaggagtc tcagtgacac atcggatttc gtcacggaac      4260
     ttagaagccg catggaggcc cttcgtccaa taccagcttc ccggcatgcg cgtccatcat      4320
     cttttatttt caaggatttg gcttcggcga ctcatgtcat gcttcgtgat gacactgttc      4380
     gacgaccgct gcaacctccc tatactggac cacaccgcat cctagggaga agggataaaa      4440
     cccttacctt ggatgtgaat ggcagggaga ccacggttag cattgaccgc attaagccag      4500
     catacttaat tccagatact ggagtgtcaa ctaataaaca ccattttcca tctcaccaac      4560
     ccccatcacc acctatacca gcacccatcg catcaccgac ctcgggtaca catcaatcta      4620
     tactaccacc aacacaggca tcatctcctc cagaccaagc atcactccca gcccctgcca      4680
     ctaccagagc tggtagacgg gttaaattta gagacattct agatttgtga tgtaagattg      4740
     gtgttcttat ttcatttgta ttttattttt cttaataaaa cagcttatgt caaagtttag      4800
     ctacttctac tgaaatcaat caaaatattt attaatatgt ataagcaatt gtaaacaatt      4860
     ttataactca tgtcttaatt ctaattccat gtaactccta tttagagtca tcaaattgtt      4920
     tattacaagg agtctctgtt tcgcttagta ccattttgta ctgtaagccc ttttggctac      4980
     taataaaaaa ttgtattttc aatttataac atgtacctaa tcttaatatc cccgataact      5040
     tattattgta ccttttttgt tcgctatatt tttgtattta atgtagttac atagttacat      5100
     atttatattc ataatagttc tgttatgtac cttttccctt gtatgtgagg agtaagtaat      5160
     aattttgtaa tttttgttat tgatgttcgt taggtacctt ttttatgtgt ataatgacat      5220
     attttaatag ttttgtttct gtgtatacct tacccttctg cgtggggggg gtgg            5274
//
ID   Gypsy-59_SpEx-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   19-NOV-2020 (Rel. 25.12, Created)
DT   19-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-232
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4188-4188 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 232 BP; 61 A; 44 C; 45 G; 82 T; 0 other;
     tgtggcgtcc ctccctggga cccactatta gtattgttat tagaatacca gatattgttt        60
     atggtcgcca ttgactatct atggttttaa ttttggcaca acaattttgg cgccactttt       120
     taggcggtta catgtgtaag cggtgtaagg tcaagagatt acaattattc aatattgaat       180
     acatatttta tttacaagtc cgcctcttat ttactcggcg tacgaagcca aa               232
//
ID   Gypsy-59_TrVa-I repbase;    DNA;    INV; 14606 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-14606
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 304-304 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2865..5087
FT                 /product="Gypsy-59_TrVa-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MGFDCNELDEPITLVNTTYNREPTAIKRAQDGRIINL
FT                 HRFNKAARCIHEFGKRGIAYDFASVIEAQKALKDILNKEYETIQLPPLDLE
FT                 ERDFDYMAESDLSETDENNVNQSTRESPENGTDPPSNIPSCVPDVHAKTPP
FT                 PSHSTSSTSPTAHHLLTDSSDVMITQINGHNTSRPTGQNKGITRDNTRTLA
FT                 TQESFDPHYVMDHDHYPSYQTTTGSRVTFERSRNFTPPSHPTGSTLPSLPP
FT                 SRSYRSENANPASNSINSAPYIGQKINKPQMAHGTPPAPKRPPFEPIKFAG
FT                 LPNEDIYEFFTSYKKAARVNQWSDQEQIDYLENYLSGTALKYLKSLEEKHK
FT                 GYLPIDLATQRLQATFAPVHRQTRFEIELSNMKQGINQTIEDYIISVEVLA
FT                 KKCEPEMPESKIVTHCLKGMRKDIAKDLLLRPMNSMTDLREGIRILENRDF
FT                 LINQCFPEKLPTPPSPPPPAPALAAKETENLSDAMKIMHSSLKTLCDSMNT
FT                 LVSTTANNAHAINFIGQQMPFNQYRNENRGDFTKDREFGRRNNSPSPYRNN
FT                 RNDSYNRSQNYQNRDQRNNSPYRQNQQINGDQPPRERNSRSPYRSQGNSNN
FT                 NDDRGRNNDRRSPYREPNSYNNNTTNDNNYKNSTNYNNYDNRYNNQGNNNT
FT                 TQSPGGYASRSPTNYNNTGYSRNQERNNANYGNRDRPPSRERERYPSRSPN
FT                 RDRTATPGNANRSSSKEPLICYNCGGKNHYKSQCPSPPLNS"
FT   CDS           5057..9235
FT                 /product="Gypsy-59_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ITMPLPAFKLLDTQTNQGSTVWVNKTSDPHFTTPLPP
FT                 RAPRPSTPAPRARKQVLFKPDIPPVVLVNVTETETLTSASGVTLHVTLNDT
FT                 KLLALLDSGSDLSIIRLDEVNPYKVEGVRGIPLTTANCSPLKILGTIPLQI
FT                 FVNSVPFHHRFLVVKKLSVPMIIGNDFAYTHVDSLSFKNNLVTLINPLSKE
FT                 LLKVKTYGQVPEIGKIMQSSEPLDPKLKIEDRKYLTNVITCNELLSSDIVN
FT                 EHETKENFAMSMNLTPLFPNQVTSVPILWAEKPRHFPLPLLPTDSLEKLNL
FT                 TLKTSQLDYEKGCQSLDIENSSDTTILLYPRMKLAKVAKIYNIAALAKSTQ
FT                 IMDEPRKILTPNQCLINPALDATQKQQLLDLIEEYKDVFTWDKSKFLAGRA
FT                 RFPPQRIPIVTNSPVYTHPYRVGPTEQKIIEHHVEDMLRSGAIFPSESLWG
FT                 APVLLVKKKLTAYDKLQSQASSNQPNLVDPLDYRFAVNFKKQNDCLGLLRF
FT                 EIPRITDILANFSGTKYYTCLDMTQFFLQIPLHHETSEVLSFSTHAGHYSF
FT                 QALPFGVHSGPCIAQRLMHSIFRNIENVTFFIDDITIATSDFNTHLLKLRL
FT                 VLEICRKYNLSLNPKKSRFGMEETVILGFLLNALGSRPNPEAVEAIKSYPT
FT                 PRTVRQARRFCGMVNYYRKYIEKASLILAPIYEITKLNTKFVWGADQEKAF
FT                 QTAKEKLCTAPVLTHFDPTLQIYLDTDASDTGISAILSVQFPDGSIKPVAY
FT                 GSKKLTDSQRKRLSVSEKEMLAIQYFCIYYKQYLYNNHIIIRTDHRPLIHI
FT                 AKSKNINSNLNKMLLKLSDFQYTIKYRQGLLNSAPDALSRVFESEEPEEPL
FT                 TRSLGTMTDTIPPTLYTVATITPQRDPEEFFVPRLFAITRAQTALDIQQLP
FT                 TPTAAPSPATLSSVTPSSATPSTMARLPVDGAAQPDNSPLTPAPDDLLPSN
FT                 FSAYQLADPSLNDIFTTLRRSPTPDRPTQRTLAKYTIKNGLLYRLSSSHPP
FT                 KLLLMIPHELRKHFLHAAHDLPLTGAHSGYARTLSKLSNYDWPSKIKDCKN
FT                 YCKSCDKCQRAKYLVGTPKGILEPTTVKPIPFYKVVIDMSGPYNSSNGMKY
FT                 VCSLVDTYTKYWVARPTRDATAKTVAKFLLDFFSIFGIPAVIKSDNGKCFI
FT                 EGSIRELLKNLGIEQRFSPFYTPRVQASAERSFRTLGDILRSYTDGQPTTW
FT                 AQYIIPATAAHNMTPHSTTKVSPYFLLFGTHPTLIPAPFLRDTCDHPINED
FT                 RLAVLDKVRQEAMKRITAAQQKMKKAINVKRTTVKFHIGEKVLIQKPVKRQ
FT                 GETSKLHYKFYGPYVIVAKITPAIYLVRQNYFHPTSKTESVHAEKIKRYFD
FT                 PLLYRKSLYSVEETIETTEPNFYDPDFLPS"
FT   CDS           12321..13103
FT                 /product="Gypsy-59_TrVa-I_4p"
FT                 /translation="MHFISALLRLLLEEYLSTLYCNMPRVSLLCWRKKSTR
FT                 KRSPRCTFEKLCHNDVIFKNILYPMLSTLDKINLYYALHRQDELPWKDLIA
FT                 DLQSYAGLPPAFVKDHESNLNWVLMTLTYNFSSHELSLYANRIYWCLLSRV
FT                 YAFSQADYFTFRRHICWYWASCHARLTPSTIMRCQRYVNLDCIYYHHRARL
FT                 SDTQLKRLFRADSVAEIHLLGNLMAVPSMTCFHHPSIPLSGDPRLLVPYAF
FT                 KKWSNSLHPSYYFAISGLIL"
FT   CDS           9531..11468
FT                 /product="Gypsy-59_TrVa-I_3p"
FT                 /translation="MTFSFHLFILVTTARGILSLDSSLTGFDCANPLHQTE
FT                 LSLKRVKECTPPPENMRNSTETIQIVQQNENIEINVISCMVEVLRSVHHCS
FT                 LFGDLQAVENSLASFYLPMTFADCKTIIDSKALRQFNIVGLQPDGMTQRPI
FT                 LLQGEVLENGNCRGAKYSDAFGTYSDVVVHATIRASIFESIASFNPALNEL
FT                 YMPTGVRCIYSSGRCFDPLRGDTFWDPSLQQSCDDKHYTVLYEGPATKLTD
FT                 PLARAPPTYIVDQHEVAFSLKATKKTRVCFQDAFQTEYPKFILFVKNEYEF
FT                 AFKKSATKVNAELLTYVNIKFVFLEQHLATNLRKLQLALHLAHCALKQELL
FT                 ETQLSLAVNHPNDFSYQLGGGPGFTCVTMGEVAYLIQCTPLPVHLRPTEVC
FT                 YNEIPVSHNNASMFLTPRTHLLVSKGTQVDCTPHLPVKFEINKRWYAFSPH
FT                 LSQTTPPSQLEAHIAFNWTYESPTNLLTAGIYTQEDVRAFQRRVSYPLESV
FT                 AVQTALLREALGYPQLDKSLKYENFMNDLSLQTIIDKTAEKVWGVFYKIGS
FT                 IVSGFLGIMFIFKMIKAVLDLLLMGKLLHNAFGWSWKLVAALFSTLAHYFL
FT                 HTEHQKVQPIRKTEDAPLDCRSFPPPSPPQVPDSPPEYPPLPRFVCKA"
FT   CDS           13710..14474
FT                 /product="Gypsy-59_TrVa-I_5p"
FT                 /translation="MGTIATLPQPFLPPQYGTRVNDLSVSPPLLGFFSPVS
FT                 WVFHFSLPFFLSFWSLSLSQSFTPPPPPTTSPSSARTVLACTQDASSPHSH
FT                 TYTSDWLIISLAWVSLHFLLLCEYIFSASVSLLDLFCICLSIGSLLHLSYW
FT                 ISSVSGLLNVSFVASFWFWQCSTFGVSYNDYLHIQPLSLPVPSVSSYSLLF
FT                 LHFYTLFCLLFSLTFLLTFALSPLLPYSTLPLFFCKRAPFSSHCSPPSPPL
FT                 IFLSSFCYSSLPIV"
XX
SQ   Sequence 14606 BP; 4135 A; 3662 C; 2451 G; 4358 T; 0 other;
     atggtggagg ctcgcgttcc cggaaaatat acgtaataat ttaatttaat aatttaacaa        60
     aatgtcctgt gaagaatgag cgattttttc tcttctcttt ttacctttaa aattttttcc       120
     ccccatgcta actcttgaat ccctttcgct agtcatttac attttttttt cttctttctt       180
     tttcttaatt ttccaagttc atgcgttttg gtattatgga atttgattca aactacgctg       240
     tcacctggag agacttttac caacctgact ttgaaccggg aaagtatttc cttcggtcta       300
     taatggtacc gtctcaccgt gggcaggata gaatccaata cctcgtcgag actacttctc       360
     cgggaaagcg cgaaattgaa tccattaaag ttgtaacccg tcattatatt tttcctgtag       420
     gaaaaacgac gttttcacgc tgaaattcta tgttcaacga tgttaatgac attattatga       480
     atcgcatttt tacccgtatg gcggatattt tcgtcatggt tttttggggc ggtgataact       540
     ggcgtaaata tgataccgaa actttaccag tcaaatccac taaatttttc ataaaaacca       600
     cttgtattcc cgatggtgaa gactttgaac tcacccagtt agtgtgtgcg aaaattccag       660
     atgatactaa attaaacgtg gttcataaag acgaaactac atttgtgttt gtgcgcgacc       720
     aaagtgtctt cggacgtaac caagtgcccg ttcccagttt attttcgtga acgttactac       780
     aacttaattt tccctcatct ttttttttta atcattatta ttatttttac aaacaatgga       840
     aattaatgaa ttgccttttt atagttttac caatacttgg cgtgatgacc gcttatattt       900
     ttatcaaaga tacgggactc gccacctttg caaatccatg acaatcccaa tagatggggg       960
     attataccac gaaaataagg tggttagaca tttccctaaa ccgagccatt atcagttagc      1020
     ctcttacaaa agtgaaaaac atttttattt atttgataaa agcgttttgg ccgccttgga      1080
     aattccaggc cccttgtaat ttcccattta attatttttt ttattttttg cttgtttact      1140
     tttttgtcgt tgtccaatat gtattatgtt ttcgaatata tgaggatcca tgatcaaaag      1200
     cctcccccca agcgcattta tgaaagaact cattatgtac cggtaactaa cacgattcta      1260
     cagaaattta aaaatgttac tgttccaaat ccgaagtgcc attcgaaatg tcacataccc      1320
     ctttttcgag ctagggaaac cttagatttt tcacaattac acagcggggg aattttggtt      1380
     cggaacgtcc cagtcgcggc tgccttgtat gagtggcccg ctgatattga ttaaggtaac      1440
     cggaagtgca atcaacgaat aagtgcgatc aacgaataag tgcgatcatc gataagtgcg      1500
     gcaatatcga taagtgcggc aataatcgat aacgcgatct acaccgacgt tgttcgaggg      1560
     attgcgcggt gcacagtgga tttagtgcat cacacttaca gcggcgcggg agcaaagcgc      1620
     aattttcaag taagacttac ccgatcctta tttactcatg gtgcgcaact cttccattcc      1680
     agggtcttcc aggaaacctt ttctgttttc cctcttttct tttttctcgt ggaaatactt      1740
     ttgttaccta ttctctttaa ttgttgttaa tcatggaccc atacatattg agaattagga      1800
     taagcattcc aaagttgtgg ttttctcaag ttaaagctca tttagtttcg gtaatggact      1860
     ctttcagatc tagatacgca tttgaaaaca tagacataat tgaaatgccg tataaattaa      1920
     ttttgaaaag gaatgaactc atcctcactg aagttcaatt ggccgagtcc gatggagatt      1980
     tcttagtttc atcaaatgtc aactatcctt aagtaacttg catgatttgc acattaccgg      2040
     tggaggaaca tttttttcac tatcgtttag tttctttccc cccccccccc tcaaaaataa      2100
     aaagtgctat taaacggtaa aacctttttt ctcccttgca atctcttttt acaagtgttt      2160
     tctatcttgt gtgtttaaag aagcgaaaaa cttttccttt tttttggaac tttaccagaa      2220
     aaaaaaaaca agtgtctttt ttattttgtt ttatttttct gtctcgtact cacgtacttt      2280
     ataatttccc tcccacaacc acttctcgcg tttggaagtc aaaaactctt tctctccctt      2340
     gttttcactt tttttttaag aaaaaataag tgttttttac tgttttcgtt ttttaattcg      2400
     cttcagtaat tttttttctc gcatcaaaaa cttttcttaa tttttaaccc ttcctttttt      2460
     ttactctccc tccaatttta cacacaataa acgatattaa atctttttcc atcaccataa      2520
     actggtaagt ttgaggtgtt ctggtgacga gccagccttt ctgttctgag gagcttagtt      2580
     tcctcccttc cttgcctttt cctcttaact ggtcaatatg gcaccttaca agccgactac      2640
     aaacctatat taaggtatct gtagtaggag gtgatacaga atggagtaaa aatgtacggg      2700
     cggatcactt ccttgacttt attcgacaga aacatccaga cgtctacgca aataattcat      2760
     cccttactat taaggaaatc ctcgagttaa tatctcctta taattcagat gtcattcgac      2820
     actatttatg ctttaaattg aatctaaccg ctccaccagg cgatatgggt tttgattgca      2880
     acgagttaga tgagcccata actctcgtaa atactactta taatagagag cccactgcca      2940
     ttaaacgagc tcaagacgga aggattatta atttacaccg ctttaataaa gccgcaaggt      3000
     gcatccatga atttgggaaa aggggaattg cgtatgactt tgcaagtgtg atagaggcac      3060
     aaaaagcctt aaaagacata cttaataaag agtacgaaac tatccaactt cctccgttag      3120
     atctcgaaga aagagatttc gattacatgg ccgaatccga cttgtcggaa acggatgaga      3180
     ataacgtcaa ccagtctact cgagagtcac cagaaaatgg taccgatcca ccctccaata      3240
     tcccgtcttg tgttcctgat gtgcatgcta aaactccacc cccctcccat tccacctctt      3300
     caacatcccc gacagctcat cacttgttga ctgattcaag tgacgtcatg atcactcaaa      3360
     ttaacggcca taatacgtct cgcccaacgg gacaaaataa aggtattacg cgtgataaca      3420
     cgcgaacctt agccacacag gaatcctttg atcctcacta cgtgatggat catgatcatt      3480
     acccatctta tcaaaccacc accggaagtc gcgtgacttt tgaaagatcg cgaaatttta      3540
     cccctccgtc gcacccaaca ggtagcaccc tcccgtccct cccaccctcc cgaagttatc      3600
     gctcagagaa cgctaatcca gcgtcaaact caataaacag tgccccttac attgggcaaa      3660
     aaataaacaa accacaaatg gcacatggta caccgccagc tcctaagcga ccacccttcg      3720
     aacctattaa gttcgcaggg ttgccaaacg aagacattta tgaattcttc acgagctaca      3780
     aaaaagcagc tagagttaac caatggtctg atcaagaaca aatagactat ttggaaaact      3840
     atttatctgg gacagccctc aagtatttga aaagtcttga ggaaaagcac aaaggctact      3900
     tgcctatcga cttggcaact cagcgattgc aagcgacttt cgcgccggtc cataggcaaa      3960
     ccagatttga aatcgaatta agtaatatga aacagggtat taatcaaaca atagaagatt      4020
     atatcatatc agttgaggtg ctcgcgaaaa agtgtgaacc cgaaatgccc gagagcaaaa      4080
     ttgttacaca ctgcttaaag ggcatgcgta aagacatcgc taaagatctg ttgttgcgac      4140
     caatgaacag catgacagac ttacgcgaag gcattagaat tctcgaaaat agagatttcc      4200
     tcattaacca atgttttcca gaaaaactcc ctactccccc ttcccctccc cctccagcac      4260
     cagccctagc agctaaagag acggagaatt taagcgacgc catgaaaatt atgcacagta      4320
     gcttaaaaac tctatgtgac tcaatgaata ctctcgtgag tactacggca aataatgctc      4380
     acgcaattaa ttttattggg caacaaatgc catttaacca atacagaaat gaaaacagag      4440
     gtgatttcac taaagatcga gaatttggcc gccgaaataa ttccccgtct ccttatcgta      4500
     ataatcgcaa tgatagttat aatcgttcgc aaaattatca aaatagagat caaagaaata      4560
     actccccata ccgtcaaaat cagcaaataa atggagacca accgccaaga gagagaaact      4620
     cgagaagtcc ttacagatct caaggtaaca gtaataacaa tgatgatcgt ggcagaaaca      4680
     atgatagacg atcaccgtac agagagccaa attcttataa taataatacg acgaacgata      4740
     ataactataa aaattccact aattacaaca actatgataa caggtataat aatcaaggaa      4800
     ataataatac aactcaatcc cctggggggt atgcttcccg ctcccccacc aattataata      4860
     acacaggtta ttcaagaaat caggagagga ataacgctaa ctatggcaac agagacagac      4920
     cgccgtctag agagagagaa cgatatccct cgcggtcacc aaacagagat agaacagcaa      4980
     cccccggaaa tgccaacagg tcctcatcta aagaaccgtt aatttgctat aactgtggag      5040
     ggaagaatca ttataaatca caatgcccct ccccgccttt aaactcttag acacccagac      5100
     aaaccaaggg tccaccgtct gggtaaacaa aaccagtgac ccacatttca caacccctct      5160
     tcctccgcgc gcgccaaggc cgtccacccc cgctccccgc gcgcgtaaac aagtgctatt      5220
     caaacccgac ataccccctg tcgtcttagt caacgtaact gagactgaga ctctcacctc      5280
     cgcatctggc gttacgttgc acgtgactct caacgatact aaattactcg ccttactgga      5340
     ttctggatcc gacttatcga tcattcgact tgatgaggtt aacccctata aagtcgaagg      5400
     agtccgagga atcccactaa caacagccaa ttgtagccca ttaaaaattt taggaacgat      5460
     tcctctccaa atatttgtta actcagttcc ttttcaccac aggttccttg tggtcaagaa      5520
     actgagtgtg cccatgatta tcggaaatga ctttgcttac acccatgttg actctctgag      5580
     tttcaaaaac aacctcgtta ctctaattaa tcctttgtca aaggaattac taaaagtaaa      5640
     aacgtacggc caagtgccgg aaattgggaa aattatgcaa tccagtgagc cattggaccc      5700
     taaattaaaa attgaagatc gtaaatattt gacaaacgtt atcacatgta acgagctatt      5760
     atcctcagat attgtaaatg aacatgagac aaaagaaaat tttgccatgt cgatgaactt      5820
     aacaccgtta tttccgaatc aggtaacttc cgttcctata ttatgggcgg aaaaaccacg      5880
     gcattttcct ctccctctct tacccacgga ttctctagaa aaattaaact taaccttaaa      5940
     gacttctcag cttgactatg aaaaaggctg tcagtcatta gatattgaaa attcgtcgga      6000
     cacaaccatt ctgttgtatc cgcgtatgaa actcgcaaaa gttgcgaaaa tatacaatat      6060
     cgcagcgttg gctaaatcaa cgcaaattat ggacgagccg cgaaaaattc ttacccccaa      6120
     tcaatgctta attaatccag ccctggatgc cacccaaaaa cagcaacttt tagacctcat      6180
     cgaagaatac aaagatgtct ttacctggga caagtcgaaa tttttggcag gaagagcgcg      6240
     ttttcctccg caacgaattc ctattgtaac caattccccg gtatatacac acccatatag      6300
     agtggggcct acagaacaaa aaataataga gcatcatgtt gaagacatgc tccgatcggg      6360
     agccattttc ccctccgaaa gtctttgggg ggcaccggtt ctcttagtca aaaagaaatt      6420
     gacagcttat gataagttgc aatctcaggc atccagtaac caaccaaatt tagtcgatcc      6480
     tttagattac agatttgcag tcaattttaa aaaacaaaat gactgcctag ggctcctaag      6540
     attcgaaatt ccacgaatca cggacatttt ggctaatttt agcggaacta aatactatac      6600
     gtgcttagat atgacgcaat tttttcttca aataccctta catcacgaaa cttccgaagt      6660
     actctctttc agcacccacg cgggtcacta ctcctttcaa gcactgcctt tcggtgtgca      6720
     tagtggcccg tgtatagctc aacgccttat gcattcaata ttccgaaata tagaaaatgt      6780
     tacatttttt atcgacgaca tcaccattgc tacgtcggat ttcaacactc atctcttgaa      6840
     attgcgatta gtcttggaaa tctgtcgaaa atataacttg tctcttaacc ccaaaaaatc      6900
     gcgatttggg atggaagaga cagtaatttt aggattttta ttgaatgctt taggctctcg      6960
     tccaaatccg gaggccgtgg aagccattaa atcatatcca accccgcgaa ccgttaggca      7020
     agcacgacgc ttctgcggga tggttaatta ttataggaaa tacatcgaga aagcctccct      7080
     gattttagcc ccaatttacg aaataacaaa attaaacaca aaattcgtgt ggggtgccga      7140
     tcaagaaaaa gcttttcaaa ctgcaaaaga aaagctgtgt acagccccag ttcttacgca      7200
     ttttgacccc actttgcaaa tctatttgga tacggatgca tcagatactg gcatttcagc      7260
     catactgagc gttcagtttc cagacggtag tattaaaccc gtcgcatacg gaagcaaaaa      7320
     gctgactgat tctcaaagga aacgactttc cgtgtctgag aaagaaatgt tagcaattca      7380
     atatttttgt atctattaca aacaatacct ctacaataac catattatca tcagaacgga      7440
     ccatcgtcct ttgattcaca tcgctaaaag caaaaatatt aatagtaatt taaataaaat      7500
     gcttctcaag ttatcagatt ttcaatacac aattaagtat agacaaggac tcttgaactc      7560
     cgcaccagat gccctttcac gcgtgttcga atccgaggaa cccgaagaac ctctaacaag      7620
     gtcgctggga accatgactg atactatacc ccccaccctc tatacagtgg caactataac      7680
     gccacagcgc gatcctgagg aattcttcgt gccgcgtctg ttcgcaataa ctcgggctca      7740
     aacagctcta gacattcaac agttaccaac cccaacagcc gctccctccc ccgccaccct      7800
     ctcctccgtt actccttcct ccgctactcc ctccactatg gcccgtcttc cagtggatgg      7860
     cgcagcgcag cccgacaact cacccctcac ccctgcccct gatgatctgc ttccttcaaa      7920
     cttcagcgcg taccaattag ctgatccctc cctcaatgac atctttacca cgttgcggcg      7980
     atcgcccacc cccgaccgac cgacgcaacg cacgttggcc aaatacacta taaaaaatgg      8040
     attgttatac agactttcct cttcccaccc acccaaatta ctgcttatga ttccgcatga      8100
     attacgtaaa cattttttac acgcagccca tgacttgccc ctcactggtg cgcattcggg      8160
     ctatgcgaga actttgagca aactgtcgaa ttatgattgg ccatcaaaaa ttaaagactg      8220
     caaaaattac tgcaagtcgt gtgacaaatg ccaaagggct aaatatttag tcggaacccc      8280
     gaaaggcatt ttggaaccaa caacagtcaa accaataccc ttttataagg tggttattga      8340
     catgagtggc ccatataatt caagcaatgg tatgaaatat gtttgctctc ttgtagatac      8400
     gtacacgaaa tattgggtag cacgccctac aagagacgcg acagccaaaa ctgttgccaa      8460
     atttctgctc gacttcttct caatttttgg cattcccgcc gtaattaagt cagataacgg      8520
     caaatgcttc atcgaaggca gcattcgaga gcttttgaaa aatcttggaa ttgagcaaag      8580
     attttcgccc ttttacactc ctagagtgca agcgtcggca gaacgatctt tcaggacttt      8640
     aggagacatc ctaaggtcat ataccgatgg acagccgacc acctgggctc aatacatcat      8700
     accagccaca gcggcgcata acatgacgcc gcattcgaca acaaaagttt ctccttactt      8760
     cctccttttt ggcacccacc ccaccctcat accagcacct ttcttacgag atacttgcga      8820
     ccatccaata aacgaagata gactagctgt attagacaaa gttaggcaag aagcaatgaa      8880
     acgtatcaca gcagcacaac agaaaatgaa aaaagctatc aatgtaaaac ggactactgt      8940
     aaaattccac attggtgaaa aagtgctaat acaaaaacca gtaaagcgcc aaggagaaac      9000
     gtccaaactc cattataagt tttatggccc ttacgttata gttgcaaaaa ttacgccagc      9060
     tatttattta gttaggcaaa attatttcca cccgacttca aaaactgaat ctgtgcacgc      9120
     tgaaaaaatt aagcgatact ttgatcccct actttacaga aaatcattat actccgtgga      9180
     ggagacgata gaaacaacgg aaccaaattt ctacgaccct gactttctac ctagttgacg      9240
     acgcagatac gcaaccagag tccccttccc ctgcatcccc atcacccttt cctcacccac      9300
     catccgttcc tacccaacaa acccccacca cgcaataaaa tatctatttt attaccctta      9360
     gacagacgtc aacccttccc aacgcagcat ttctctatta aacttatagg cagaacacta      9420
     gggaatggaa agacatggct ggttaacaga tccttcaaat tccagcatgt gcatccccct      9480
     tccccctccc ctcccaccgt cctaattacg gtactttctg tttacagact atgacgttct      9540
     cttttcatct ctttatcctt gtcaccactg ctcgtgggat cctttctctc gactcttcgt      9600
     taacgggatt tgattgtgcg aaccctcttc atcaaacgga actgtctctg aaacgtgtca      9660
     aggagtgtac cccaccgccc gaaaacatga gaaactctac cgaaaccatt caaattgtcc      9720
     aacaaaatga aaacatcgag atcaacgtta tatcttgcat ggtggaggtc ctcagatctg      9780
     ttcaccattg ttcccttttc ggagacctcc aggcagtaga aaattcacta gcctcctttt      9840
     acctcccgat gacctttgct gactgcaaaa ccataatcga ctcaaaggct ttgcgtcaat      9900
     ttaatattgt agggttacaa ccagatggaa tgactcaaag gcccatttta ttacaaggcg      9960
     aggtcctcga aaacgggaac tgcagaggag caaaatattc agatgccttt ggcacttatt     10020
     cggatgttgt tgtccacgct actatacgag catctatttt tgaatctata gcctctttca     10080
     accctgctct taatgagctt tacatgccta caggagtgcg atgcatttac tcctcaggca     10140
     gatgctttga cccactgaga ggagacacat tttgggaccc ctccctccag caatcatgtg     10200
     acgataaaca ttataccgtc ctatatgaag gcccagccac caaattaaca gaccccttag     10260
     ctcgagcccc gcccacctac atagttgacc agcacgaagt agcttttagc ctaaaggcca     10320
     caaaaaagac cagggtctgt tttcaagacg ccttccaaac ggaatatcca aaatttatcc     10380
     tttttgttaa aaacgagtat gaatttgcat ttaaaaaatc cgctaccaaa gtcaatgctg     10440
     aacttttaac ttacgtcaat ataaaatttg tgtttctcga acagcatttg gcaactaatt     10500
     tacgtaaact gcaacttgcc ttacatttag cgcattgcgc cctaaaacaa gaattgctag     10560
     agactcagtt aagtttagca gtaaatcatc ctaatgactt tagctatcaa ctgggaggtg     10620
     gcccgggttt cacctgcgta acaatgggtg aagtcgcata cctaatccaa tgcacccccc     10680
     ttccagttca cttgcgtcca acagaagttt gctataacga aataccggtc tcgcacaaca     10740
     atgctagtat gtttttaaca ccacgaacgc atctattagt atcaaaagga actcaagtcg     10800
     attgtacacc tcatttgcct gttaagtttg aaataaacaa acggtggtat gcctttagcc     10860
     cccatctttc tcaaacaacg cctccaagcc aacttgaggc acacattgca tttaattgga     10920
     cctatgaaag tcccacaaat ttgcttacag ctggtatata tactcaggag gatgttagag     10980
     cctttcaacg cagagtttcc tatccattgg aaagtgttgc ggtgcaaaca gcattgttgc     11040
     gcgaagcttt agggtatcct cagttggaca aaagtttaaa atacgagaat tttatgaatg     11100
     acctttcact ccaaactatc attgataaaa cggcagaaaa agtatggggc gttttttaca     11160
     aaataggttc tattgtatca ggctttttag gcatcatgtt tattttcaaa atgatcaaag     11220
     ccgttttgga tctcctttta atgggaaaat tattgcataa cgcctttgga tggtcatgga     11280
     aattggtggc tgccctcttc agcactttgg ctcattattt tttgcacacg gaacaccaaa     11340
     aagtccagcc tattcgcaaa actgaggacg ctccgttgga ctgtcgttca tttcccccac     11400
     cctccccccc gcaagtacca gatagtccac cggaataccc tccacttccg cgttttgtgt     11460
     gcaaggctta atgtctaagg caaatgcttt caccttttga tacccccccc cccaccaacc     11520
     cacattaaca gaaccttaac ccaactccat gtttttctac ctagagagag agaaaaaaaa     11580
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaattatta tccttatttt tatgagcatt     11640
     cagtaaataa ccgtttcttt ttttctataa attcacctat gtaaatacca caacctatca     11700
     atccctcctc ctctttttca gacaatggac atagctgatg gggccagctt cgtctcatct     11760
     atcattcaat cggaattttc agcctatatc ttagagagag accgtctcca ctccactgct     11820
     attttcgttt acggttctcg ggcccaaata aatgttattt ggaactcttt ttatcccttt     11880
     tctcgccctt ataataccga tattgaactt aattttaatg aagtagccat cgatttattt     11940
     ataaaacgaa atggacgcag agaattttct ctttctttaa tgcatgtgcc ccaccacgac     12000
     aaattagatc tcattctctt caagtaggcc ttcagcacca tttttttttt tgctctcgtc     12060
     tatttcaatt ctactctccc cccttcaatc tgtgcaaaat tgtccgtttt ctctcccttt     12120
     tcgtctactc ttttttctct cttttgtttt cttcgaagaa aaacaaaagg gacgctgagg     12180
     atttacgtcg cctggacccc ttaagttccc ccttaccctt atctcttttc tgtatttagc     12240
     atggtccttt aggaccgcag tttgtaaatc cccctctctg ttctcactta cttgcttccc     12300
     tttttttttc cactttgttc atgcatttca tatcggccct tcttagatta ttgctggaag     12360
     aatacctttc tactctttat tgcaacatgc cacgcgtgtc gctcctttgc tggcggaaaa     12420
     agtccaccag gaaacgtagt cctcggtgta ctttcgaaaa attgtgtcac aatgacgtca     12480
     tttttaaaaa tattttgtac ccaatgctgt ccaccttgga caaaataaat ctgtactacg     12540
     ccttgcacag gcaagatgag ctgccgtgga aggacctcat cgcagacttg caatcgtatg     12600
     caggccttcc accggctttc gttaaggatc acgaaagtaa tctaaattgg gtgcttatga     12660
     cccttacata caatttttcc tcccacgagc tatccctata cgctaaccgc atttactggt     12720
     gccttctctc tcgggtttat gccttttctc aagcagacta ttttacattc cggaggcaca     12780
     tatgctggta ttgggcgagc tgtcacgcga ggttaacgcc atctacaatc atgcgttgcc     12840
     aacgttacgt aaatctagac tgcatttatt atcaccaccg agcccggctt tccgacacac     12900
     aactgaagcg tctgtttcgt gcggactcgg tggctgagat ccacctgttg gggaacttga     12960
     tggcggtccc ctctatgacg tgctttcacc accccagcat accgctgtcg ggagacccta     13020
     gattgctcgt tccctatgcc tttaaaaaat ggtccaatag cttacaccca tcatattact     13080
     tcgccattag tggcttgatc ctgtaattaa tgttccgttg cctcacctgt aaatgcattt     13140
     ttttttcttt ttctccaagg tcccttacga actcacccac tttatttctt tctctgcttt     13200
     tcatggtttg ggttccgtta ttctgttctt tccctctgtt tattattttg cccccccctc     13260
     attttgtacc cccccaccca cccccttcgc gcttgccagt aggcattagt ataccttttt     13320
     atttttcttt aattttagga tagtttttag cccctcaccc tcttgccagt aggcatatgt     13380
     ataccctttt ttctctaatt ttaatcttgc cagtaggcat atgtatacct atttttcttt     13440
     tctttaattt tagtcttgcc agtaggcata tgtatccctt tttttctttt ccttaatttt     13500
     agggtacttc ttaacccctc acccttttgc cagtaggcat atgtatacct ttttttcttt     13560
     tctttatttt tagatagctc ttaccccttc acccgcttgc cagtaagcgt atgtgtactt     13620
     tttttctttt atttactttt agagtagttc ttaacttcat tagttctcag ggttatatcg     13680
     atgtaatttc tgtagctttg taaattttta tgggcaccat agcaaccctc ccacaaccat     13740
     tcctccctcc ccaatacggt actcgcgtca acgatctaag cgtctcccct ccccttctcg     13800
     gattcttctc cccagtttcc tgggtcttcc acttttctct tcccttcttc ctctcctttt     13860
     ggtctctctc tctctctcaa tctttcactc cccccccccc ccccacgaca tcgccttcat     13920
     cagcacgcac cgtattggcc tgtactcaag atgcttcttc accgcactct cacacttata     13980
     cttcggattg gttaattatc tcccttgcat gggtgagtct ccattttctt ctgttgtgtg     14040
     aatacatctt ctctgcatct gtttctctat tggatctctt ctgcatctgt ttatctattg     14100
     gatctcttct gcatctatcc tattggatct cttccgtctc tggccttcta aacgtctctt     14160
     tcgttgcctc cttttggttc tggcagtgct ctacttttgg cgtatcctac aacgattacc     14220
     tgcatattca acccctctcc cttcctgttc catcagtcag ttcttattcc ctcctcttcc     14280
     tccattttta caccttgttt tgtttacttt tctccctcac ctttctcctt acttttgccc     14340
     tttcacccct tctcccctat tcgacgctac cattattttt ttgcaaacgc gctcctttct     14400
     cttctcactg ttctcccccc tcccccccac tcatattcct ttcttccttc tgctactcct     14460
     ccctgcccat cgtgtaagct cttctctttg tacaccctgt tgttactaat gtgtttttgt     14520
     gtgttttgta ctaacccctt tcgttatcaa cgccatcgca cgttcattct tgcaaattgc     14580
     gttcgcaatt tcatcggccc ggtagg                                          14606
//
ID   Gypsy-59_TrVa-LTR repbase;    DNA;    INV; 2005 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-59_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2005
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 363-363 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2005 BP; 496 A; 471 C; 361 G; 677 T; 0 other;
     tgtgacaaca cgggctcatt actgtttcat tatttttcaa cagacatgtt cccgttctca        60
     ctgagtctta attcctctcg ttataaattc ttggtaatag catccttctt ccttttatgg       120
     atgcctacct cataactcct tctgtgtttt cttttacatg atttcatttt tatgtcttaa       180
     ttatgctaag attaattcaa agcgccacgc cgccgcgata acgcgccacc gtattccaca       240
     tggtacgctt cacgcgatgt ttgggcgccg caacgccgat aaacggccta gcgctgtctc       300
     ttaaatccgt caaaatgatg ctcctataat cttaacagga caattttttt ctttgtaacc       360
     cttccaagcc gaccgcacct acaaacaacc acttgggtct ccaccccctc cccttttttt       420
     aattacccca acttctcacg ctccgccgct ttcggctgga gaaaagcact ttagtcgggc       480
     aataaatcga tcaaacaatt ttttcatgcg cccacgtaac tcttccgaaa aaccgccacc       540
     ccggtgaaac catgacgtca tttgtgacca atgggtggct tgaaagaaac tgaaagcgcg       600
     ccctctttcc ggggggagcg cctcattggc ttttgggtta ccccaccggg tgtttaacta       660
     tccaatggga aaccaaagtt cctgacttcc catgcgatcc ggcttttgga ccggcgatgc       720
     actgaaacca aaaattggag ctcaacactc tgtctctgtc tctcaactca acaaaacgta       780
     attgtcttat caataattta cttcgagtaa cacaatactt cgcgtatttt tatacaacga       840
     attcggttcg tgttttacct aagttacttc gagtaacgta gttgcttcga gcaattttat       900
     ttttcgaatt cgtttcgttt atttttttgt tttattgttg cttcgcgcaa cttaagaaaa       960
     ttattaattt ccttcgtgga aaatttaatt ttcaatttta acaccattaa ttatattttt      1020
     cgtagtcttc gcgtcttacg gagaagttgt gcaaattgcg ttcgcgctgc tttgagtgat      1080
     tgttaaatct taaatctcac ttcgctgtga attaattctc attttttacg catcctatcg      1140
     agtgattatt aaattaaatt tatttaattt aatggtataa atctccggga tatattcgct      1200
     ctatctactt agtgcaccgc cgtctaaatc cccgaccgcg cttcgattgt tatcagtgct      1260
     acgatcccct catttggttg tcttgtgcgg tgcgcgcgtt aatttaaaaa gtgtcatctt      1320
     gaaatatatc tagtgcggcg tacgataacg aaagcttatt ctttataatt tatattttat      1380
     tgtgtgcctt aataattttt gttgaaaata tttccggtca agtgtcgcga tattctgcat      1440
     cacggaattc atccgttacc agtgcgcgta gcgccactca tttttatacc gttctatctt      1500
     ctatcatttt ataccgtgct atctctgtgt attcttgtgc gccgtcttct tgtcgcgttc      1560
     tattgaataa aagaatcgtc ttaccggaaa ttcatcttat gatttcataa taccaacatg      1620
     catttcgtac cttcaaatta ctagcgaata tttatttaaa ggcgggagac ctcttgatcc      1680
     gaccctctta ctcgctctac catcagcttt cgccctacaa ctggttcacg ttagagaccg      1740
     agcgactttc ggtttacgat tacgctctac ctcggacgag ttctctgtcg gaatttagta      1800
     tgattctttg cttgggatag ttggatcaaa gggtcgatta tgccccctat ttatgggatc      1860
     acatctttta agtagggtgt gaaaaataac cctgggggat aattagtcac tttcaaccgt      1920
     tccgctcctc agtaacgata atagataccg acaatcagta attttgggag agggagcgga      1980
     aggtggaagg cacaaccccg ccata                                            2005
//
ID   Gypsy-5B_DEl-I repbase;    DNA;    INV; 8112 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.12, Created)
DT   30-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5B_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-8112
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7084-7084 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. The ORF1 is completely identical to
CC   the ORF1 of Gypsy-5B_DEl-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           1126..4443
FT                 /product="Gypsy-5B_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TVWRSRTLGKRMPKPEAAFLLDLRQGGGEECRVLPKI
FT                 GKWPAIPATERRAGVARCCLSKLTGDLIEEEQQLSAAVQIGRTSHKATIDT
FT                 GATASFISEELADTLAAYGKITRTRRQVRLADGRCSGINTQLEVEIEFGNK
FT                 RLPMSLLILPGVVDSLVLGWNFLTGVGAEIRCAGHTVVIPERRRHNGWLEE
FT                 KLSVAVVQTNSEECDVEKFLEQELAEFRTMSGTSNIAEHRITMKDDKPIKQ
FT                 RYYPKNPKVQGEINAKVDELLEKGCIEHSRSPYSSPIVMVKKKTGQWRLCV
FT                 DFRQINAKSIKDAYPMPRINYILDQLREARYISSLDLKDGYWQIPLEENSR
FT                 QFTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMSPHAFAYQDD
FT                 IIVIGRTLEEHRRNLREVFRRLKQANLRINPEKCHFFKSELLYLGHRVTDQ
FT                 GIGTDPEKVAAIAELEPPTTIRELRQYLGVASWYRRFVPDFARIVKPLNDL
FT                 LRKGTKWTWTPEHQQAFEEVKARLVADPVLACPDFDKPFVLQTDASDYGIG
FT                 AVLTQETESGEKVISYSSRTLNGAEKNYSTSEKECLAIVWAIRKLKPYLEG
FT                 YHFKVVTDHMALKWLNSIESPSGRIARWALELQQYDFEISYRKGQLNVVAD
FT                 ALSRQPLPEAFRLAKETPEDTQGTCSWIKDMCEKINKQPQKFPDYIMEGGA
FT                 LYRHIPHRAGSEDVAAWKLCVPRGLRETVLKENHDSPAAGHVGSRKTIARL
FT                 AARYYWPGMHRDARAHVRKCETCLRYKPNQMQAAGKMLTQIPEEPWATVCA
FT                 DFVGPLPRSKHGNQMLLVLIDRFSKWTELVPLRAATAESLQKAFRERVIAR
FT                 FGVPKVVITDNGVQFASRAFKKFLSEMGIKQQFTAPYTPQENPTERANRTV
FT                 KTMIAQFAGQNQRNWDEKWPEIMLAVNSSTSESTGYSPCFLTQAREPRLPS
FT                 ALYDRETIGTGKQTETPEDKANKMKEIFEIVRRNMEKAAQDQARHYNLRRR
FT                 QWNPTIGDTVWAKEHHLSKAAEGFAAKLAPRYDGPYTVIDFVSPVICKIRH
FT                 KDTQKERTVHVSELKQQTQELGTDKQGQHKQATTSGGADYSVGHKPESI"
XX
SQ   Sequence 8112 BP; 2492 A; 1899 C; 2459 G; 1259 T; 3 other;
     tctggcgccc aacgtgattg tcctgacagt gaaaatacag caataaacag aaatggggaa        60
     aaattggatc tatctcctca agaaagagga tttcccaaag gtggcagcca agcttggcat       120
     tatcctggag ggcaagtcgg acgacatgcg aaaggccctt tcagagtatg ttacgaagac       180
     acaaaacgac ccaggaatgg cggaaatttg ggctgagctg gaggaattgt acgacaaacc       240
     aagctcgagc ggcaagttac aagtcccaga cgctgaacag ctcatagcca gcctgggcgt       300
     tgagagcatg aaggaggcag gaagatccag gggcccaagc caagaaagaa gaacagaaca       360
     gcaaaggccc agcgcaccag actatgcaaa agtcgcgaag caagtcaggg aatggtcgtt       420
     caagtttgac ggcacggaga aaccactgga gtttctggaa caagtggaat ggtcagcaaa       480
     cacatacggt ttgaacctga acctcattcc ccgagccatg cctgaattgc tgcaaggcaa       540
     ggccctaaaa tggttcatat caaacaataa acactggagg acatggggag agttcagcga       600
     cagttttcaa acgtatttcc tgccaagggg tttcttcaca aagctcgcag atcaggtcaa       660
     acaaaggaaa cagggcttta gagagtcgtt caaggactat atggttgaca tgcagaccat       720
     gatgagacca cttggctact ccccaaagga aacactcgag cagataaagg aaaactgcac       780
     gcctgacctg aggatttccc tgaggacata taagatagac gatctagagt ctctaatggt       840
     gctggctgac gagtatgaag aactcgagaa agagcgagaa gcatttattc aagaaaacaa       900
     attctcgcga agcaaaacaa cagcaccaca agtcacgtgt agaaggtgcg aagaagaagg       960
     cggacaccaa gcacctattg acggtccaag acaatggact ccaaacacct acaaccacca      1020
     gagcacgtta tggaggccac ccaataccaa tcagagacca cccagcgcag ctccaagagc      1080
     ccacaggtca cagacacaca tcgtgaaccc acacgaagcc tgtagacggt gtggcggtca      1140
     cggacattgg gcaagaggat gccaaaacca gaggctgctt ttctgctgga cttgcggcaa      1200
     ggtgggggtg aggagtgtag agtgctgcca aagatcggga aatggcctgc gatcccagcc      1260
     acagagaggc gagcaggggt cgcaaggtgt tgtctctcca aactaactgg cgatttaatc      1320
     gaagaagagc agcagttatc cgcagcggta cagattggca gaacctcaca caaagccaca      1380
     atcgacaccg gagcaacagc gagctttata agcgaggagc tggcggatac actggctgct      1440
     tatggaaaga ttacaaggac gagaaggcaa gttaggttgg cagatggcag gtgcagcggg      1500
     ataaacacgc agctcgaggt ggaaatcgaa ttcggcaata agcgattgcc catgagcctg      1560
     ttgatcttac caggagtggt agactcgctg gtgctgggat ggaatttcct cacaggagtc      1620
     ggcgccgaaa taaggtgtgc cggacataca gtggtgatcc cagaaagaag aaggcacaac      1680
     gggtggttag aggaaaaatt gtccgtggca gtggtgcaaa ccaactcaga ggaatgcgac      1740
     gttgaaaaat tcctagagca ggagctcgcg gagtttcgaa caatgagtgg aacatccaac      1800
     atagccgaac accgaatcac catgaaggac gacaaaccaa tcaaacagag atactaccca      1860
     aaaaatccaa aggttcaagg ggaaatcaat gcgaaagtcg acgagttgct ggagaagggg      1920
     tgcatagaac actcgagaag cccgtacagc tccccgatag tcatggtgaa gaaaaagaca      1980
     ggtcagtgga ggctttgtgt cgactttaga cagatcaatg ccaaatccat caaagatgct      2040
     tatccgatgc caaggataaa ttacatattg gaccagttga gggaggcaag atacataagc      2100
     agtctggatt tgaaagacgg atactggcaa attcctctgg aagaaaatag caggcaattc      2160
     acggcgttca cagtgccagg aaaggggctt ttccagtgga aagtaatgcc atttgggtta      2220
     cactccgcct cggcgacttt ccagagagca ctggatcagg ttattggacc ggagatgtca      2280
     ccacacgcgt ttgcatacca agacgacatc atcgtgatcg gacggacact ggaagaacac      2340
     agaaggaacc tgagggaagt gttccgacgc cttaaacagg ccaacctgag gataaatccc      2400
     gaaaaatgcc atttcttcaa aagcgaactc ctttacctgg gacaccgcgt tacggaccaa      2460
     ggaatcggca ccgatcccga aaaagtagca gccatagctg agctggaacc acccacaacc      2520
     atccgggagt tgcgccaata cttgggcgta gcatcgtggt acaggcgatt cgtgcccgac      2580
     tttgcgcgaa tagtaaaacc actaaacgat ctattgcgga aaggcacgaa atggacatgg      2640
     actccagagc accagcaggc gttcgaggag gtgaaggcaa ggctagtggc cgatcctgtg      2700
     ctggcatgcc cggatttcga taaaccattc gtactgcaga cggacgcaag cgattatggw      2760
     ataggggcag tcctgacgca ggaaactgaa agcggcgaaa aggtcatttc atattcaagc      2820
     cggaccctga atggcgcgga aaagaactac tcaaccagcg aaaaggaatg cctggcaatc      2880
     gtgtgggcaa tccggaagct caaaccatac ttggaaggat accacttcaa ggtggtgacg      2940
     gaccatatgg cgcttaaatg gttgaacagc atcgaaagtc cctcaggaag aatagcgagg      3000
     tgggccctgg agctgcagca gtatgatttt gaaatatcat acaggaaggg gcagcttaac      3060
     gtggtcgctg atgcactgtc aagacagcct ctaccagaag cctttaggct agctaaagaa      3120
     actccggagg acacgcaggg aacatgcagt tggatcaagg atatgtgtga gaagattaac      3180
     aaacagccac agaagtttcc ggactacatc atggagggag gcgcattgta caggcatatc      3240
     ccgcacagag caggcagcga agacgtggca gcatggaagc tctgtgtccc acgggggctg      3300
     agggaaacag tcctgaagga gaatcacgac tcaccagctg ckggacacgt gggaagtcgg      3360
     aaaacgatcg caaggctggc ggctcgatat tactggccag gaatgcatag ggacgcccga      3420
     gcacacgtac ggaaatgcga gacatgcctc mggtacaagc ccaaccagat gcaggcagcc      3480
     gggaaaatgc tgacgcaaat acccgaagaa ccatgggcaa cggtatgtgc agactttgtc      3540
     ggaccattgc ccaggtcgaa gcatggcaac cagatgctgc tagttctgat agataggttc      3600
     tcaaaatgga cagaattggt gccactgcga gcagcaacgg cagaatcact tcaaaaggcg      3660
     ttccgagaaa gagtcatcgc taggttcgga gtcccgaagg tggtaataac ggacaatgga      3720
     gttcagtttg ccagccgtgc attcaaaaaa ttcctcagcg aaatgggcat taagcaacaa      3780
     ttcacggcac catatacacc gcaggagaat ccgacggaaa gagcaaaccg gacagttaaa      3840
     accatgatag cgcagtttgc gggacagaac cagaggaatt gggacgagaa gtggccggag      3900
     attatgctag cggtaaattc aagtacgtcg gagtcaacag ggtactcccc gtgtttcctc      3960
     acgcaggctc gagagcctcg actgcccagc gccctgtacg acagggaaac catcggcacg      4020
     ggaaagcaga cggaaacgcc tgaagataag gccaataaga tgaaggagat cttcgaaatt      4080
     gtgcgccgga acatggagaa ggctgctcag gaccaagcca ggcattacaa tctacgaagg      4140
     aggcaatgga atccaacgat aggggacaca gtctgggcaa aggagcacca tctgtcaaag      4200
     gcagccgagg gtttcgcggc aaagctagcg ccgagatatg acggaccgta cacggtaata      4260
     gacttcgtct caccagtcat ttgtaaaatc cgccacaagg atacacaaaa agaacgaaca      4320
     gtccacgtca gtgagcttaa acaacaaaca caagaactcg gtacagacaa gcaaggacaa      4380
     cacaagcagg caacaacatc aggtggtgcg gactatagcg tcgggcataa gccagagtct      4440
     atatagaccg caggataaca cgagcatgca acgacaaaaa gtacagacta tatcgtcggg      4500
     cataagccag agtctatata gaccgcagga taacacgagc atgcaacgac aaaaggtaca      4560
     gactatatcg tcgggcataa gccagagtct atatagaccg caggataaca cgagcatgca      4620
     acgacagaac gtgcggacta tatcgtcggg cataagccag agtctatata gaacgcgtgg      4680
     caacacaaac agcaacaagt agtgcggact atagcgtcgg gcataggcca gagtctatat      4740
     agaacgcggg ataacacgag catacgagga caaaaggatg cggactatag cgtcgggcaa      4800
     gtaccagagt ctgtatagaa cgcatgacga cacaagcagc caacaacaac aaaaggggcg      4860
     gactatagcg tcgggcatgg gccagagtct atatagaacg catgacaaca caagcagcaa      4920
     acaacaacaa gtagtgcgga ctatagcgtc gggcatgggc cggagtctat atagaacgca      4980
     ggaaacaagg aggtacagtg acccagacca cgaggcaaac tgattctgcg tcgggcataa      5040
     agccagagtc atcagtagga cgccgcatgg aataaggtga tgcacatgtt ggttaccgta      5100
     gcgtcgttag agtctatacg gcacacaaac tgaaactact agtgatcgag ggaaggaaac      5160
     ggcacgatca gtacgtgtga acaggagctc gtaccgtagc gtcgttagac tctatacggc      5220
     agaaacaaga ctaaaggcag cgtcgaccga agtagaggga gagacggcac agcaaagctg      5280
     aaccgtaaaa cccaagcggc gacgaactca cacggggaag ggcgacatga gagaagcaac      5340
     gggatcgcaa gcaagagcaa gagaacaccc gaagaaggga tgcccgaggg aaataacggg      5400
     agggtcataa ggaatgacca agaaccgagt catcgtcagg agagccgcca gcaagagggg      5460
     ccaattcgaa aaggagagtc aagatgagcg cacgcgtgac aagagctgag gcccgcagga      5520
     ggatggctgc cgaggacttg gcaggatccg gaccggggca aggacggtcg gaggacaggc      5580
     ctgtcgtccg gccccccgaa ccccgcgacg gatcccaagg aaccgacgac ggtcggaggc      5640
     gtcatcgccg gagcccaccg tcagttccga tagtgacgtg gtgatggtgg acgatccgac      5700
     gatggaggcc aggaggtggc ggctgcggaa tgccgcgggg cccgagggga gtattcccca      5760
     tggctcggag ggcagggtcc accaggactc tgccgacgat gaccatgcag ccgaggcccg      5820
     cagaacagag gccataatag cggagtaccg ccgccagcat gagcggaggc agcgagaggc      5880
     tgcgcgcaag gaggccaccc agcgtaagga gcaggacgct cgggcagagt gggaagcggc      5940
     gctgagagct gccgaggagg aggagcgccg gatatggggc gacccagtcc tcctcaagga      6000
     agtgccaccc caggcggagg gggcgcccga ggttcccctg accccgaggt acgtcgcgga      6060
     gccaagggaa cgggcagcgg acccagcgga ggaggagaac caaaccccgt ccccaccccc      6120
     atggatcccg gcacgcccac ctaccccgag gtattgcccc gagtgggaag aggcagcatc      6180
     ggaggaggag caagaggagc ggcggcagca ggaggagcag cggcagcagg aggagcggcg      6240
     gcagcaggag gagcagcggc agcaggagga gcggcgcagc agggcggcgg cagcaggagg      6300
     gacctccggg ttacgcccgg atggacatcc cggtggccca cgtcagccat gcgatcggct      6360
     ccttcgaggc ggaaggacgc gtgtggaggc agcacaccgt cacctggacg tggccggacg      6420
     gggccactgt agcgacggag gaggaaggag cccaagtgtg ggaggaaccc cggggaaact      6480
     gtcgcgatcc acggttgtgg aggaccgcag tcccaggggg ccccgccgga gtcgtggccg      6540
     acgccgacgc cgaccccaac cccatctccg ctggcctcgc cggaggtagt cgccgctcag      6600
     caaggaaggg ttgagcaggt aggccttccc gccgaggacg tggtggagaa agggccgtgg      6660
     gtgtggccgg acccggtggc acccccgagg ccgaacctga agcggcagta ttccgcgccg      6720
     gtggtggaga cgaggcccgc gttcatgcgg cagtcctcag cgccggaccc gaggcgctgg      6780
     agggaagtcg tcgaggtgga ctggccggag ggaatcaccg aagccccagc ggtcgtagca      6840
     gcacgaaggc gaggaggaaa gaggtgcgtc ctggtgcagc agggcggccg catgttccgg      6900
     gtgcgggtcg gaccgttggg gatcagggta tttacccagt aataaataaa agaaaaaaaa      6960
     aaaggaaaca taaaactcac atttgcactg gtacagggga aaaaaaaaga aaaaaaaaac      7020
     acacacgcag ccaccgacaa atgaaaacac aaaaaaaaaa ggtggatgta tattgtccat      7080
     ataaaaaaaa aagaaaaaaa atgtgtgatg aatctgaaaa aaaaaagggg tgaagtcagt      7140
     aggagttaaa gcaaaatatg cggtgtactt acacagtaaa aatatgaaac agggatgagg      7200
     ggtccaaccg aaaagggggg gtgaggcgaa gcacgtgtcg tccaaatgtt gggcagtttt      7260
     tgtcttcagg caaagggaat gctgaaaaga aggaaaaaag gtcagatcgg gttattgaaa      7320
     caaacggctc acttacgaga agttgcgagg gccaaccggg agggggaggg ggtgcaggag      7380
     aaggcgcatc accctcttcg tcaggtccag aacgctgaaa aaaggagaaa agaacagaga      7440
     gaaaggagaa aaggagaaat tagaaaactt acccggagaa aatgtcctca tctgcccaaa      7500
     gggatggggg cgcttcgatt tatgaccgat tggcgctgca cgatagtgtc gatcggtggg      7560
     cacaaatact ggaaatatcg acacagggag tcacaccgtg gaacatcgat atattaagtg      7620
     gcaacaccac gttgggtcac ggaaccgata gcaactggag accgatcgat ttggcggaga      7680
     gtgaccatac aacagagagt cacacgagag actatcgata acaccgataa cgactggaga      7740
     ccgatcggca cgatgtagag tggccatccg acggagaaga catatcggga attcaaaaaa      7800
     tcatcggggg aaacgtctgg gcgggaattc aaaagtctac gggggaaacg tctgggcggg      7860
     aatttaaagt ctacggggga aacgtctggg cgggaaattc aaaatctgga aggaggatcg      7920
     gcgctgtgga actcaagaag gagctgtgag cgtcgtggga accatctgga agagcgagtc      7980
     gactggaaga ctacaggcga acgaggacaa gtacgaggag aagacacgtc gagggaagga      8040
     tgtcagaatg tggagtatac caaggcagag agaacagcga gtctcttttt cattcccgaa      8100
     gtaaggggag aa                                                          8112
//
ID   Gypsy-5_AA-I repbase;    DNA;    INV; 4914 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_AA_;
KW   Gypsy-5_AA-LTR; Gypsy-5_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4914
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 979-979 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3905-4366] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           664..2043
FT                 /product="Gypsy-5_AA-I_1p"
FT                 /translation="MEEQLFKLPPFECDSVPITELRQKWFDYKKQFEYIAA
FT                 VMSKKKKRKLKSIFLAVSGRQLQRVYESLPEVNQECEDDEDEFDSMIRRLD
FT                 HYFAPKQHDTFERYSFWTQKPDAGETLDKFLLRAKVLANKCRFGSSEKESR
FT                 DAAVIDKIVMLAPPELRRKILEKPKINLDDLTTLVNTHLSVQHQVRELGQR
FT                 TSGAGNLLEASRGNTFVNKITTESENRSRWAKSHPTADCSRCGLRLHKPGE
FT                 KCPAKDVQCHHCNRVGHFAKKCYFGSNKGTWKRKPSAENPNPRGHKTQKVN
FT                 AINNDETSTTRDMKPEAQVQDSFIYAISDNHDEMVWCKVGNILVEMMIDSG
FT                 SKYNIIDQQTWVYLQSRNAAVDNVKPSTKRLSAYAQKDSLDIICTFDANIA
FT                 IVEGNDLNFAAAFYVIKDGKQNLLGRDTAKRLGVLLIGLPSVNNSEFIQHV
FT                 SENTVDKFPVIKGSY"
FT   CDS           2543..4894
FT                 /product="Gypsy-5_AA-I_2p"
FT                 /translation="MFRYTRLMFGICSASEHFQRIIEQILSNCPNSFNYQD
FT                 DIFVHGKTEAEHDAALESVLRTLEAHNVVLNTKKCKFKVTETEFLGHDISQ
FT                 QGVRPTEDKITAVQQFRSPTSAEEVRSFLGLVCYVGRFIPDLATKTFDLRQ
FT                 LTVSGQKFDWTTKHEIAFNNLKRAVCSAPTLGFFDNNRRTRVIADASPVGL
FT                 GAVLIQFEDEYDDKPIVISYASKSLSSTERRYCQTEKEALAIVWCVEKFKL
FT                 YLLGRVFELETDHRPLTAIFKPTSQPPGRIERWVLRLQPFKFRIVYRPGKQ
FT                 NIADSLSRLSLTTINEDVDKCDDQLYISAITDSVAVDVSEIKNAIITDPEL
FT                 LLVKDALLTSDWTDGAIRDGAKKYIPFQNDLALLEGFVIRGCRIVIPQSLR
FT                 ARMLQLAHEGHPGETLMISRLRDRVWWPGMDEDARKTVRNCEGCRLVSRPS
FT                 APEPMRRREMPKEPWVDVAMDFLGPLPSSEYLLVIVDYYSRYKEVCTMKKI
FT                 TSEETIKRIEPIFVRLGYPRTITLDNGRQFISTEFEEYCFSRNITLNHTAP
FT                 YWPQANGEVERQNSSLLKRLKISHSTNRDWKNDLLEYLMMYNTTAHSVTGK
FT                 APSVLLQNRLIRSKIPSISDIETAPPVNSEVHDRDRILKHRGKEREDVRRH
FT                 AKPSDIQKGDRVLLQNLISTGKLTTTFGKTQYEVMERKGNRVKILDPVSGS
FT                 VLERNIAHLKKIYNPQAISNEETSTSVMGDTINNPMNDQDPPPSSTVDDTN
FT                 DNPMYNQDQAPPSRPPRIMCRPSWQRDYFVNQL"
XX
SQ   Sequence 4914 BP; 1538 A; 1044 C; 1100 G; 1232 T; 0 other;
     tattggcgac gagtagaacc tgcggtgatt caagcaaaca aaatcagaag gtaaaccaaa        60
     tcagtttttt tacaaatgtt gggagattgt tccagaaaga aaagtcaagc taaacaagcg       120
     gttgcccagc aacagattgc gatacgcggg taaaagaaaa aacaagttcc ctctacatgg       180
     gaactgcctc aggaacggat ttcatccgtt gagttaggcg gaatgaaaaa aatcaagttt       240
     gcttcaacag tgaactgcct cagtgtcagg cggtcaagtt cgttttatca gcgaactgcc       300
     tcagtgtcag gcgaaagaaa gaccaagttc acctaagaag ggaactgcct caggagcggt       360
     tttgatccgt tgagtcaggc gcaagttcgt tttaacagcg aactgcctca gtgttaggcg       420
     gcaagttcac cttaaaagtg aactgcctca gaagcggttt tgatccgttg agtcaggcgg       480
     aaaaatggct agatcattac ctgccaatac aacggattgg tccgttgtgt caggcggtcg       540
     gcaataggtt gctaatggca accccgtgtt aactagacta aaatattcaa aacaattctc       600
     caatatttgt tcttacacca tgcacatggt actattgaaa ttaatttcaa tcatttctca       660
     gacatggaag aacaactgtt caaactaccg ccttttgaat gcgatagcgt tccaataacg       720
     gaactcaggc aaaaatggtt tgactataaa aagcagttcg agtatatcgc ggccgtcatg       780
     agcaagaaaa agaagagaaa attgaagagc attttccttg ctgtttctgg tcgtcaactc       840
     caacgggttt acgaaagctt gcctgaggta aaccaagagt gcgaggatga cgaggacgaa       900
     tttgatagta tgattcgtcg actcgaccat tactttgctc ccaagcagca tgacacattc       960
     gagagatatt cattttggac tcaaaaacca gatgccggag aaacattgga caagttcttg      1020
     ttacgggcca aagtcctggc caacaaatgt cgatttggat catcggaaaa agagagcaga      1080
     gatgcagcag ttatagacaa gatcgtcatg cttgcgcctc ccgaactccg acggaaaatt      1140
     ttagaaaagc ccaaaatcaa cttggatgac ctaactaccc tcgtcaatac ccatctatcc      1200
     gttcagcatc aggttcgcga gcttggccag cgtacctccg gtgctggaaa tctgttggaa      1260
     gcaagtcgtg gtaacacgtt tgtcaacaaa attaccactg agagtgaaaa cagatcacgt      1320
     tgggcgaaaa gtcatcctac agctgattgc agtcggtgtg gattgaggct gcacaagcca      1380
     ggagaaaagt gtccagccaa agacgttcaa tgccaccact gcaaccgtgt tggacatttt      1440
     gccaagaagt gttattttgg ttccaacaaa ggtacttgga aacgcaaacc atctgctgaa      1500
     aatccaaacc ctcgcggtca caaaacacaa aaagttaatg ctattaacaa tgatgaaacc      1560
     tctacaacac gtgatatgaa gccggaagct caagtgcagg actccttcat atacgcaatc      1620
     agcgataacc acgatgaaat ggtttggtgc aaggtgggca atatactcgt tgaaatgatg      1680
     attgactcgg gcagcaaata caacatcatt gatcaacaga catgggtcta cttgcaaagc      1740
     aggaatgctg cagtcgacaa tgtgaaaccg tccacaaaac gtctatcagc atatgcacaa      1800
     aaggattcat tggacatcat ttgcacgttc gatgcaaaca tagcgattgt ggagggcaat      1860
     gatctgaatt ttgctgccgc cttctacgta ataaaagatg gtaagcagaa tttgcttggt      1920
     agagacactg caaaacgatt gggagtgctg ctgattggtt tgcctagtgt caacaactcg      1980
     gagttcatcc aacatgtttc tgagaatacc gttgataaat ttcctgtaat taaaggtagc      2040
     tattaatatg tcatcaataa agataatatc ctaatcattc ctgtgcccag gtgttaaaat      2100
     tcgaatcgat atcgatgaaa ccgtgacgcc cgttgctcag catgtccgtc gtgtacccat      2160
     tgctctccgt cgacaagttg aagatcaaat caaccgactt ctaagaatgg gtattattga      2220
     aagagttaac ggtcccagcc cgtgggtttc ccccgtagta attgttatca aggataacgg      2280
     tgatgttcga ctgtgcattg atatgcgtcg agctaatacc gcaatcagaa gagagtatca      2340
     catgattcct acgcttgatg atcttctcgc aaggtattgt attagacaac ttaattgttc      2400
     aaattaaatt atttagaaaa cttctgtgat caggttaaac ggttgcaagt ggttctctcg      2460
     tcttgacatt aaggatgcgt accaccaagt ggagttgcac gagtcaagtc gacacataac      2520
     gacatttatt actcatcttg gtatgtttcg atacaccagg ttgatgttcg gaatctgcag      2580
     cgcgtcagaa catttccagc gtattatcga gcaaattctg agcaattgtc caaactcttt      2640
     caactatcaa gatgacattt ttgtacatgg gaagacggag gctgaacatg acgctgcttt      2700
     agaaagtgtt ctacgcacat tagaagcaca caatgtcgtg ttgaacacta agaaatgtaa      2760
     attcaaagtt acggaaacag aatttttggg ccatgacatt tctcagcaag gcgttagacc      2820
     aacggaagat aagataacag cagtgcagca gttcagatcg cctacatctg ccgaagaagt      2880
     tcgaagtttt ttgggactcg tttgctatgt aggaagattc attcccgatt tagcaactaa      2940
     aacattcgac ctacggcagt tgacagtcag tggacaaaaa ttcgactgga cgacgaagca      3000
     cgagatagcg ttcaataatt tgaaacgggc tgtatgctca gcgccaacgc tcggtttttt      3060
     cgataacaac cgtcgaacta gagtcattgc ggatgcatcg cccgttggtt taggagctgt      3120
     tttgatacag ttcgaagacg aatatgatga taaacccatc gttatatcgt atgccagcaa      3180
     gagcctttca tcaacagagc gtcgatattg ccaaacagaa aaagaagcgc tggcaatagt      3240
     ttggtgcgtt gaaaaattca aattgtacct acttggcaga gtcttcgaac tcgaaacaga      3300
     tcaccgccca ttaactgcaa tcttcaagcc aacatcacag cctcccggac gcattgaaag      3360
     gtgggtgctt aggctgcaac cgttcaagtt taggattgta tataggcctg gtaaacaaaa      3420
     tatagcagat tcattatctc ggctatctct aacgacaatt aacgaagacg tagacaaatg      3480
     tgatgatcaa ctctacatta gcgccattac agattcagtg gctgtagacg tttcggaaat      3540
     taagaatgca atcattactg atccagaact acttctagtc aaggatgctc tgttgacttc      3600
     agattggact gatggtgcga ttagggatgg tgctaagaaa tacatacctt ttcagaacga      3660
     tcttgccctc ctcgaaggtt tcgtaattcg cgggtgcaga atcgtcattc ctcaaagtct      3720
     acgcgcaaga atgctgcaac ttgctcacga aggtcatcct ggtgagacat taatgatatc      3780
     acgacttcgt gacagggttt ggtggccggg tatggatgaa gatgcaagga aaacggtcag      3840
     aaactgcgaa ggttgtcgat tggttagcag accatcagca cctgaaccaa tgcgccgccg      3900
     cgaaatgcca aaagaaccct gggtagacgt tgccatggat tttctggggc ctctaccatc      3960
     gagcgaatac cttctagtga ttgtggacta ctatagtaga tacaaggaag tgtgcaccat      4020
     gaagaagatt acgtcagagg aaactattaa gagaattgag cccatcttcg tccgtttagg      4080
     ttatccaaga acaattactc tggataatgg tcgtcagttt ataagtactg agttcgaaga      4140
     atactgtttt tcaagaaata taactctgaa tcacacagcg ccatactggc cgcaggcgaa      4200
     cggtgaagtt gagaggcaga acagttctct tttgaagcgg ctaaaaataa gtcattcaac      4260
     gaatcgcgat tggaaaaatg atttgcttga gtacctcatg atgtacaata caactgcaca      4320
     ttccgttaca ggtaaagctc catctgttct gttgcagaat cgtctaatcc gttccaaaat      4380
     accatcaata agcgatatcg agacggcgcc tcctgttaac tctgaagttc acgataggga      4440
     tagaattctg aaacatagag gcaaagaaag agaagatgta aggcgccatg caaaaccctc      4500
     agatattcaa aaaggcgatc gcgttttgtt acaaaacctt atatcaaccg gaaagcttac      4560
     tacaacgttc ggcaagaccc aatacgaagt catggaaaga aaaggaaacc gcgttaaaat      4620
     tcttgatcct gtttcaggga gcgtcctgga aaggaatatc gcccatctca agaagatata      4680
     caatccacaa gcaatatcga atgaagaaac atcaacatcc gtaatgggcg atacaatcaa      4740
     caacccgatg aacgatcagg atccaccacc atcatccacc gttgatgaca ctaacgacaa      4800
     tccgatgtac aatcaagatc aagcaccacc aagtcgccct cctcgtataa tgtgtcgacc      4860
     atcctggcag cgagattact ttgtaaatca actttgatct ggaagaaagg gaga            4914
//
ID   Gypsy-5_AA-LTR repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_AA_;
KW   Gypsy-5_AA-I; Gypsy-5_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-177
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 980-980 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 177 BP; 64 A; 29 C; 28 G; 56 T; 0 other;
     tgtggtgaat ctgaaaaaac atagtaggcc cgacgttcag accgtcagtt tgaaaactga        60
     gatcttttag tgaacacacg ttatcagtcg atgttacttt gcaaactaaa tatcattaaa       120
     ccctaagata gttttcattt aaatgtacaa ctttataaat tagtgaataa tatcaca          177
//
ID   Gypsy-5_ACe-I repbase;    DNA;    INV; 5374 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-5374
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 734-734 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to the consensus. The 3'-end is not determined.
XX
SQ   Sequence 5374 BP; 1672 A; 951 C; 1340 G; 1401 T; 10 other;
     gtttgggggc tcgtccgctt gacattcaat gcgtgctgtg cgtgaatcaa ctgctcggaa        60
     aaggagaatc attgctacag agcaatctcc tgctgtgtca accgtgagga tgtcacagga       120
     aatgtcacct acgacgatcg ctcttcaggc cgttttgcga gaggtgcaac agctacgaga       180
     ggagcaacgg cacgcgcggg ccgaatatgc agaatcgtca caacgcaacg ctgagataca       240
     cagatgcgtg aggaacatca gcgcatgctg accgattaca tggagtctct gcgataacgc       300
     gacgccgaga tccagcggct acgggaggaa cttcgtagcg gaaacgctca gataagtcct       360
     tctgataatg aaaatttatc gcaaacgcgc gaccgcgata ttacgcgatt ttcttcgagc       420
     ggcgaacgcg gaacgcgttg aatcgtgtat ctcacttcgc aatattacgc gattttctgc       480
     gggcgacgga aatgacacga atacgtgtga gcgcgtggaa tcccgtattt cgcttcgtga       540
     ggaaacaaac gttaggttaa agccggatac gtttgacgga agtgctcctc tagggaattc       600
     cttgcccaat ttaatttgat tgcacgtgcg aaccgctgga gagtggagac gaaggctgcc       660
     gttttagcgt catgtttgag aggaaaagcg cgcgcggtgt tggaaagcgt acaaaaccta       720
     gagaatttag atttttcaga gttaaaatca agattagagt tacgtttcgg caaagcgcaa       780
     tcgttacaga attattattc gcagtttaca aataggaggc agaaatacgg agagagtatt       840
     gcctcgttgg gctcggatat cgaaagattg tcgcaatcgg catatccgga atgtcccgat       900
     acggttcgcg ataaaatcgc gtgcgcacaa ttcgtttccg ctctatccga cgtaaaaaga       960
     gcgcttcagt agaggaagaa catctctgag aatgcgaggg caaaacatca aattaataca      1020
     agaaaacagt ttaaaaagga taattttaat tatgaaaaaa aaagagggaa aaattttaat      1080
     ttcgagaagg gggaaaagaa gcaagatgag cacgatgaga gaaaaaaatt aataaaaatg      1140
     gatttaagaa atttgaaaag ggaaaggatt ataggaaaat aaaaaaggta aagaagtgct      1200
     gggaatgtgg taaagagggg catttccgat cagaatgtcc gggtaaatcg gtaaaccagg      1260
     aatagtcgag ctctgcgggg tgcgctcgac tgatttcagg gataccccga aaaacaatta      1320
     ttgtaataat aatcaatgtt ctttcaggat taatagactt aaatataatt taatgagttt      1380
     ctgttttcaa ggagagataa ataataagcg ttgtattttg agaatcgata caggctctga      1440
     tgtgtcaatt ttaaatgata atttagttgg gccgggtcag tgtaaaatta aaataaataa      1500
     ctgtaattta aaatatccca cgggsgaaaa ggtttcgatt gactataaag tgtatacaaa      1560
     ggttcgacta ggaaactatt tggttgagat tccaatgttg gtggcaaaaa tcaatgatga      1620
     atgtattctt ggtgtagatt ttcttgaaaa atcaatttag gaaatatctt tgaatctatc      1680
     tttgatagtc agaaagaaac agaaagaacg atgttcaatg ttttcgcgta gaaaaatcat      1740
     ctgattttga tgttccctcg aatttaaggt gtctcttcga cagggattct gaacatttaa      1800
     mtcaatcaca gaaaaagctt tttgcagaat twcttawtga atttcgtgat atatttkctg      1860
     agcaaattgt tgcaggaaat tgtgagattg gagaacatgw gattaattta aaagattctc      1920
     tccccattaa acagagctcc tcgtcgaatt cctattmata tgaggaagga agtcaatgaa      1980
     attattgagg aaatgagaac agggwgtaat tgaggaatct gtaagtcctt ggatgtcccc      2040
     agccgtttta gtgagaaaga aagatggaac aataagattt tgcatcgatt atcgtaagct      2100
     aaatgatgtt actaacaagg attcttatcc cttacccaga gtagacgaca tcttcgatca      2160
     actctcaggt aattcttggt attccacttt agatttaaaa agcggatact ggcaaattaa      2220
     gattcggcca gaagataaag aaaaaackgc gttctctatc ggaaacgggt tatggcaatt      2280
     tagggtgatg cccttcggtt tgtgtaatgc tccagccaca tttgagcgag taatggagca      2340
     aatcttmcag gagtttctct caaaaagttg tttagtgtat ttagatgacg ttattatttt      2400
     tggtgaaaac ttcgaggaaa tgatagaaaa tttaagaaaa gttttgagcc gtatgcggga      2460
     agtaaattta aaaattaatc ctaaaaagtg tactttcttc ggtcgagaag taaaatattt      2520
     ggggcactca atttcagctg cggggatttc cacggacagt gataaaattg ttgccattaa      2580
     agagtggcca attccgcgaa acaaaaagca tctgcgaagc tttttgggat tatgctcgta      2640
     ttatcgaaat ttgtaaaggg attttcttca ttagcaaagc ctctttacgc tcttacagag      2700
     aatcaaatga gattcgtctg ggatgagcag tgtgagagca gttttaataa ttggacaagc      2760
     tcttagttct tcaccaattc tctcttttcc aagagaggag ggagagctca ttctcgacac      2820
     agatgcatcg ggtttcggaa tcggtgcggt cttgtcgcaa aggcaaaacg gaagggaaaa      2880
     gttatttcct attttagtcg tgttttaaat aaagccgaga ggaattattg tgtcacgcga      2940
     cgcgaacttt tgtcaatagt tgaatcgatc aaatcattcc atcattattt gtacggacgg      3000
     aaatttttaa tacgaacgga tcatatgtcc ttaagtggtt aatgtccttc aaggatttgg      3060
     aaggccaatt ggcacgctgg atggagaggc ttcagcaata tgacttcgag ataatatacc      3120
     gtaaaggtgt cttacataaa aacgctgatg gattatccag atgcccttgt gaaaatacga      3180
     agtgccaata ttgtgcaagg gtagaagtga aggaggcttt aaaaacggaa ggtgctgtcg      3240
     caaggatagt cttgtcggaa gaaaacttag aaacttggcg tcaggaacaa ttagaggatc      3300
     ctggcatttc gattattctt caaggaaaag agactgggat ccggccatct tggcaagagg      3360
     ttgcgtccag ggaaacggcc gcgaaagtat actggtctta ttgggattcc ttagagatca      3420
     aggatggtgt actctacaaa atgtggaagg ctccaaattt aagaagcacc gtggctcaat      3480
     tggtcgtccc taagaagcga gttcaggaaa tattaaagga aattcatgat tcttcatcgg      3540
     gaggacactt cggagttaat aaaactctgg agaagattcg taagagattt tattgggctt      3600
     cttgtaaaca agacgtgaag gattggtgca gaacgtgcaa aatctgcgtt gctcgaaggg      3660
     gcccgacggg aaaaggaaaa tctccgcttc aaatttacaa tgttggagct ccatttgaga      3720
     gagttcaaat ggacgtactt ggtccacttc cgataactct ttcagggaat aagtatttat      3780
     tagttgttga ttgcttcact aagtgggtgg aagcctttcc cttaaagaat atcagagcaa      3840
     aaaccattgc agagatcttc ttgaatcagg ttatctcgag acacggggtt ccgttggaag      3900
     tccacacgga tcaagggaga aattttgaat ctaagatttt tcgggaatta tcgcaattgc      3960
     tcggaattaa gaagacgaga acatccgctc tgcaccccca gtcggatagt caagtggaac      4020
     gccaacatca gacaattcta aactatctgg cgaagttcat cgataaaaac caaaaagatt      4080
     gggatcattg gatcccaatg tatttgttgg catataggtc ttccaaacat gaggccactg      4140
     gtgtaactcc ggcggagttg tatttcgctc aagatcttag gcttcctgta gatctactcc      4200
     gaggaaaccc cccctaagta tgaagttggg aattcaacga acgattattt aagtaaaata      4260
     aagaaaaagt tagaagaagt tcacgatcaa gttaggaaac gggtcgatat taagtcttct      4320
     cgaactaaga cctgatatga ccagaaggcc aggcagattc attttgaagt gggtcaaaag      4380
     gtttggttgt acaatcctcg aagagtgaaa gggaaagctc ctaaacccta aattgcagag      4440
     tagctgggaa ggtccttatt gtgtggaaag gaagcttagt gatgttgttt actgcattcg      4500
     caagtcgaac agatataaaa ataaaattgt acatacagac aggttggcac cgtatcttga      4560
     gaggcccgtg gagtagaata aacagacaag tgtcaattca ataaagcaga gccttgttat      4620
     ggtgtcactt agcttattaa tatgaattta ttttgcagcg caagccgcgc ggtgataact      4680
     ccttttagtt acagaaatgc cgaatatctg tttggactca ctttggcggt actgcaacct      4740
     acgtgggctc gtcactcaat gtgaggaaga gtagtgatgt accactccta acgtgctgca      4800
     acatcaacag cggcggagag tccagctgag gaagcggtat caagaggagt ccaacggatg      4860
     gagcgacatc ggcaactcat taggtctttt tttttaagaa gaccgcctcg cccgcggttt      4920
     ttgagccgtg gtttttccgc gggacggagg gcagatgccg aggcggggat tggggtagag      4980
     gtactacggt acgtcatttt ttttgtcccc ctcccccttt ccgaaaagag aagaaccaag      5040
     agcgcaaggc ctcaagagaa gaggcaagag gatcctagcg ttcccttcac gaagacgggg      5100
     ggatgccccg agagggtttc atcctacggg ggagtagcta ccctccgggg agaaactgaa      5160
     gaggggtcct gcccggaagg gaagagggga tcaagaataa acttccagga gaaagtcgga      5220
     cctcaagaaa accaaagctc cagaaaactg ttgcaacagc acagtaggga gcaagaaatt      5280
     ggtcgggagg aagctccgaa ttcctttgag gggccaacgt tcttggaaga accataattg      5340
     tcgggacgac aatttaagag aagggggggg gcag                                  5374
//
ID   Gypsy-5_ACe-LTR repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-320
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 735-735 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 320 BP; 51 A; 88 C; 84 G; 97 T; 0 other;
     tgttacgccc ttgccatgcc gattccgtgc cgctcgcgaa ataccgaagg tcgtgtcgcc        60
     cggcaacgag ccactccgtt attttaacaa gatcggcaga ttcggatgtg agccgtcgct       120
     tcgctcggac gtgtctctcg atccgctgat tctatttacg ttcgtgtgct ttgagtttac       180
     gtgtgattgt gttctgtgtc ctttcctaaa taaactcttt tccttctttc caccatatcc       240
     gtgttgttca tttctgcgtg cgggagtgcg tggacgcgtt cgcgagagcg tctccgcgag       300
     tcggacgcgc ggacgtaaca                                                   320
//
ID   Gypsy-5_AnFu-I repbase;    DNA;    INV; 5780 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5780
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2891-2891 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1276..2271
FT                 /product="Gypsy-5_AnFu-I_1p"
FT                 /translation="MRRSSRIAGVKIAKPLDIPEVIIEEEFTMAPKLDINI
FT                 ALKLVKPYNGSASELNSFIESVELLQDYSEGVTEINLIKFLKTTLTGSAHG
FT                 TIDSATNIQQAFQLLRNRFSVQLTPLAVEKEIASQKQTKQSISEFGSVIEK
FT                 LATKLSAAHVSIGTFSNEAATINIVEPIAVRAFINGLKNPSTRFFLQARNP
FT                 ITLNKAISDALECEPTEINDDATFWCQSFNRGTNNNIYYNRQNRGYFGNRP
FT                 WNRPQNRSANNSDRNFYQSRPTRSFTNRGGRRPFRSRPYHNSYNSRSGYQY
FT                 GPQSANNTNHNINLADTNNSENNPTPDNSIDSVDIQNLFR"
FT   CDS           2189..5779
FT                 /product="Gypsy-5_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IWLILTTQKIIQHQITQLILWISKIYFADLTTNNSVK
FT                 APFTIFDKTFDLIIDTGATCCIFNKEYLPKNIHINESKILKINGLSGNTHT
FT                 LGFVETNISFSSQDFPIIFHIVNTLPSHVVGLIGSNFLQDHGAIINFKEGK
FT                 LNFISLNNHNSYIIPPRTETIVYVATSFTDTCVVLNEAIEPNVFIANTIAN
FT                 PYNGTIPVRIVNFQNRPINLKTLKPTIAPASNYSIITISTAKRNCAHANQL
FT                 LTELDLSHLSESDKIAISKICVKYNDIFCLKNDKLSTTHIYEATLKVRDNT
FT                 FPIYSKQYKLPYAQRAQLDNEISKMLESNIIEEASSEWNSPVLLVPKKSST
FT                 DQKKWRLVIDYRKVNTVLKDDKFPLPNIDEVIDSLSGSKYFSHLDLSQGYY
FT                 QCQLKKEDRPITAFTTPTGQYQMTKLPMGLKTSPSIFSRMMTVALSGLNLE
FT                 KCLVYLDDIIVFGKTMEEHHKNLISVFERLRNVNLKLNPTKCHFLKQDLIY
FT                 LGHYISAEGVKPDPQKVQCIQNWPIPTTVEEVKRFVAFANYYRKHIKYFAE
FT                 ICMPLNYLTRKNIPFKWTATCQKSFDILKHLFINPPILDFPDFGDHNIFTL
FT                 HTDASGSAIGAVLSNKNGKPISFASRALNKAELNYGTIEKELLAIVWAIRH
FT                 YRPYLYGREFELFTDHRPLVYLFSMKNPSSRLTKFRLALEEYNFAIYYKKG
FT                 KENVVADALSRLTVSELKQMSADALITTRTSSHKVKTISTHDQSEVSKVKY
FT                 IELKICPNTQNLKIEDDKVVIPQIKSMIHLRGILTEIKGYCKTLKKKIYLI
FT                 VRKNDQNIKEFMQQLQTLNVKGLPKILILNEDIKVISENDSAKKLLIINDF
FT                 HILPTAGHAGIQRTLKTIKQRYTWKGIDEDVRKMIKNCAECQKYKKVNNPK
FT                 IPLKITSTSTKAMEKIFLDLVGPFVNSEGFEYILTTQCDLTKFVTATPIKN
FT                 KRTETVAKAFVENVILKYGVPEKICTDRGTEFMSALFTEVCKLLRIEKLSS
FT                 TAYHHETIGALENSHKMLGNYLRIFSNNNSLDWNQWVKFYEFAYNNTVHTS
FT                 TNYTPFYLVYGRQANVPSHITNDSEQSRIQYDLDNYVTLLKAKLCIVHNDV
FT                 RQRIMKCKTNSKTLYDKKCKSKDIKRGDQVLIRNETASKLDMQYTGPYEIV
FT                 KCEDENVIVRINNKNEIIHQNRIKRYEKQTKKKKKRLG"
XX
SQ   Sequence 5780 BP; 2174 A; 1070 C; 969 G; 1567 T; 0 other;
     tggcgatcct gccaggagcc ccttttgcca ggaacccgac aaataaagga gattgtaatt        60
     aagtgtgcga acgtgccctc ctagcaagct acagagctat aagtaaacgc tccataagta       120
     aagctccgta agtaaacgtg tgagcgtacc cgaaccgtga gcgtacccaa aaagtatcaa       180
     acgtccgtga gaagcccgca gtgaagtgtg caagtgtgtg agtggatcga gatcacctct       240
     gcaaggacaa cgctccgatg tgctgtgata ttacaccgtg gtgaaattcg tttttttttc       300
     accggaagca aagcgatcac cgtgactcca ccatcgctaa agagtgaatc cgccatcgta       360
     gacgccacca cgaggaatca catacgccat tacgaagacg ccagatgaaa atcgttgtcc       420
     gccattgcgt ttaagccaac ttgacgccac caactaagtc atgtggcaga gaaaaaaaaa       480
     atcatcatcg gcgatcggct agcagcgacg acaatattat cgcgagaaat ccccaaccga       540
     gagtgataca tgcagataca gcagtaatac cagcggcagc gaaacagaga caccaatacg       600
     gtcagcatca gcaatactaa cagcggcaac gccacgtgca gaagctgcaa atattcagcg       660
     tcagcagcaa acgaaccgat agcatctgta ataccagcag caccgaagca tctacaacga       720
     tagcagcgaa gacagttaca acacaagcag cagcggcaga aacggcgaca tcaacggcag       780
     aatcagcgcg atagcaccaa aagaaaaaaa aaggtatgac ccaaacatgt aaggtgagtg       840
     agcatgtgta tgcgtataaa ttattaaaaa aaaaaaatgt taatttaatg tgcgatatta       900
     aatattaggt aattatgcgt gtgcgttgaa tactatgtgt gcgtgagtga cagtgcggta       960
     aaaaatagta agcgttataa ccgaaaaatg aaaaatcaag ataatctcgc ctaagaaaaa      1020
     aaaaaatcct ttcatacttt ttaatcgcgt caagtttcat tctcctaata gcttttacga      1080
     tttattccat gaatttattt attgcgtatt gtataatatt tatttattta tttgatcatt      1140
     tttgctatat actttttaat ttacactatt aattgatact acatatgcat aataattatt      1200
     atgtgctaaa gtgcgtcgtg tgtgctgaaa acaagtgtta ttagtgttga tacctcataa      1260
     tttatcggtt aatacatgcg tagatcatct agaatcgctg gtgtgaaaat tgctaaacca      1320
     ctagacatac ccgaagtcat aattgaagaa gaatttacaa tggctccaaa attagatatc      1380
     aatattgctt tgaaacttgt aaaaccttat aatgggtctg catcagaatt gaattctttt      1440
     atcgaaagcg tggaattgct acaagattac tcggaaggtg ttacggaaat aaatctcata      1500
     aaatttttaa aaaccacttt aactggtagt gcgcatggaa cgattgattc tgctactaat      1560
     attcaacaag ccttccaatt gcttagaaac agatttagtg tacagttaac tccacttgca      1620
     gttgaaaaag aaatcgcttc acaaaaacaa accaagcaat ctatttcaga gttcggttct      1680
     gttatagaaa aactcgcaac aaaactatca gcagcccatg tatcaattgg tacattttca      1740
     aacgaagcag caactattaa cattgtggaa cccatagcgg tacgtgcgtt cataaacgga      1800
     ctaaaaaacc caagcactag attctttttg caagcaagaa atcctataac ccttaataaa      1860
     gcaatttccg acgctcttga atgcgaacca accgaaataa acgatgatgc aactttttgg      1920
     tgccaaagtt tcaaccgtgg tacaaataat aatatatact acaatagaca aaatcgtgga      1980
     tactttggaa accgcccttg gaatcgtcca caaaacagaa gtgcaaataa ttccgatagg      2040
     aatttttatc aatcacgtcc aactagatca tttacaaaca gaggaggacg tcgaccattc      2100
     agatccaggc cgtatcacaa ctcatacaat tctcgatcag gataccaata tggaccccaa      2160
     tctgcaaata acaccaacca taatataaat ttggctgata ctaacaactc agaaaataat      2220
     ccaacaccag ataactcaat tgattctgtg gatatccaaa atttatttcg ctgatttaac      2280
     aacaaataac agcgttaaag ccccttttac tatttttgat aaaactttcg atctgattat      2340
     cgatacagga gcaacatgtt gtatcttcaa caaagagtac ctaccaaaaa atatacatat      2400
     aaatgaatca aaaattctta aaatcaatgg tcttagtgga aacactcata cgttaggatt      2460
     cgttgaaaca aatatttctt tttcatcaca agattttccc attatatttc acattgtaaa      2520
     tactcttcca tcacatgttg taggattaat aggatcaaat tttttacaag atcatggagc      2580
     aattataaat tttaaagaag gaaaattaaa tttcatttca ttgaataatc ataattcata      2640
     tattatacca ccaagaacag aaactatagt atatgttgct acaagcttta ccgatacttg      2700
     tgtagtacta aacgaagcaa tagaaccaaa tgtatttata gctaatacga tagcaaatcc      2760
     ttataacggt acaatacctg ttcgcatcgt aaactttcaa aaccgtccaa tcaatttaaa      2820
     aaccttaaaa cctactattg caccagccag taattattct attattacaa taagtacagc      2880
     taaacgtaat tgcgctcatg ctaatcagtt actaaccgaa ttagatttat cccatctctc      2940
     agaaagtgat aaaattgcta tttcaaaaat atgtgtaaaa tataatgata ttttttgtct      3000
     taaaaacgat aaactaagta caactcatat ctatgaagca actttaaaag ttcgcgacaa      3060
     cacttttcct atttattcaa aacaatataa actaccttat gcgcaaagag ctcaattgga      3120
     taatgaaatt tcaaaaatgt tggaaagtaa tataatcgag gaagctagtt ccgaatggaa      3180
     cagtccagtc ttattagtac ccaagaaatc ttcaactgat caaaagaaat ggagactcgt      3240
     gatagattac agaaaagtaa atacagtttt gaaagatgat aaatttccac tccccaacat      3300
     agatgaagta attgattcct tatcaggttc caaatatttt tctcatttag acctttctca      3360
     aggatattat cagtgtcaac taaaaaagga agatagacca attactgctt tcactacgcc      3420
     taccggccaa taccaaatga ctaaattacc tatgggtctt aaaacaagtc catctatatt      3480
     ttcgcgcatg atgactgttg cgttatcagg tctaaacctt gaaaagtgct tagtgtatct      3540
     cgatgatatt atcgtctttg gcaaaacaat ggaagaacac cataaaaatt taatcagtgt      3600
     ttttgagaga ctaagaaacg tgaacttaaa actcaatccc accaagtgtc attttttgaa      3660
     acaagatttg atatatctag gacattacat ctcagccgaa ggagttaagc ccgatcctca      3720
     gaaggtacaa tgtattcaaa attggccgat acctacaact gtagaagagg tcaaacgatt      3780
     cgttgctttt gcaaattact atcgtaaaca cattaagtat tttgcagaga tttgtatgcc      3840
     tttgaattac ttaacaagga aaaacattcc ttttaaatgg actgcaacat gtcagaaatc      3900
     gttcgatatt ttaaaacatt tgtttattaa cccaccgatc ctagattttc cggattttgg      3960
     tgatcataac atttttacgt tgcatacaga tgcatcagga tcagcgatcg gcgctgttct      4020
     tagcaacaaa aatggcaaac ctatttcttt tgccagccga gcgttaaaca aagctgaatt      4080
     aaattatgga actatagaga aagagctatt agcaatcgtt tgggctatta ggcattatcg      4140
     tccctacctc tatgggagag agtttgagtt gtttactgat cacagacctc ttgtatactt      4200
     attctcaatg aaaaatccat cgagcagact aacaaaattc cgtcttgctt tagaagaata      4260
     taattttgcc atatactaca aaaaagggaa ggagaatgtg gtagctgacg ccttgtcacg      4320
     attaaccgta tcagaattaa aacaaatgag cgcagatgca ttaataacaa cccgaacaag      4380
     ttcacacaaa gttaaaacaa tttctaccca cgaccaatcg gaagtcagta aagtcaagta      4440
     tatcgaattg aaaatttgtc ctaatacaca aaatttgaaa atagaagatg ataaagtagt      4500
     aatacctcaa atcaagagca tgattcactt acgaggaatc ttgacagaga taaaaggtta      4560
     ttgcaaaacg ttaaaaaaga aaatttattt aattgtgagg aaaaatgatc aaaatataaa      4620
     agaatttatg caacaattgc aaacactaaa tgtgaaggga ttaccgaaaa tactaatatt      4680
     gaatgaagac ataaaggtta tttcagagaa tgattcagca aagaaacttc taattataaa      4740
     cgattttcac attttgccaa ctgctggtca cgcaggtatt caacggacat taaaaacaat      4800
     aaaacagcgt tatacatgga aaggaatcga tgaagacgtt agaaagatga tcaaaaattg      4860
     cgcagaatgt caaaaatata aaaaagtgaa caatccaaaa ataccattga aaattacttc      4920
     aacttccacc aaagcaatgg agaagatatt cttagaccta gtagggccat ttgtgaattc      4980
     tgaaggattt gaatatatac ttactacgca atgcgaccta actaaatttg tcacagcaac      5040
     tccaattaaa aataagcgaa ccgaaacggt agccaaagcg tttgtagaaa atgtaatact      5100
     caaatatgga gtgccagaaa agatttgtac cgaccgagga actgaattta tgtcagcttt      5160
     attcacagaa gtctgtaaat tactacgaat agaaaaactc agctcaactg cttatcatca      5220
     cgaaactata ggagcactag aaaattctca caaaatgtta ggaaactact tgcgaatatt      5280
     tagcaacaat aattctttag actggaatca atgggtcaaa ttctacgagt ttgcgtataa      5340
     caacacagtt catacttcaa ctaattatac accattctat ctcgtctatg gtagacaagc      5400
     aaatgttccg tcacatataa caaacgattc agaacagtct agaatccaat atgatttaga      5460
     caattatgta acacttttaa aagcgaaact ttgcattgta cataatgacg ttagacagag      5520
     aataatgaaa tgtaaaacga acagtaaaac gttgtatgat aaaaaatgta aatctaaaga      5580
     cataaaacga ggagatcaag ttttgattcg caacgaaacc gcaagcaaat tagatatgca      5640
     atacacaggt ccatacgaaa tagtaaaatg cgaagatgaa aatgtaatag tcaggattaa      5700
     taacaaaaat gagataatac accaaaatag gataaaacga tacgaaaagc aaacgaaaaa      5760
     aaaaaaaaaa aggttaggcg                                                  5780
//
ID   Gypsy-5_AnFu-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2957-2957 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 194 BP; 63 A; 42 C; 39 G; 50 T; 0 other;
     tgtggtgcga gccaccctgt aatttatagc gtaattaagg tatacatgta ttagtataag        60
     attttagaac taagttagta tatataagta cgtacgaacg cacatcacgc tctcttagct       120
     caccaccagg gtctggccac gtcgggtccg ttaccggcgc aacacaatac aataaagagt       180
     atacgaacat aaca                                                         194
//
ID   Gypsy-5_AnMe-I repbase;    DNA;    INV; 4369 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4369
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6817-6817 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100.0% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           247..1089
FT                 /product="Gypsy-5_AnMe-I_1p"
FT                 /translation="MEQRQEEMKFFIQMGQVPDILKMLPEFDGNPKHLNTW
FT                 VEDVDGIYNYYSAFANCPTQFGIIERTVRRKIIGAASDALHASNVGFDWSA
FT                 IKEVLVKKFSDRRDLMSLDYELTTIKRKNYENIELYFGRVNELLTFITNHI
FT                 QNNVKYNSPNHAFLDYFKDKAVDSFIRGLNSDLGILVKTAAPDSLNKAYEL
FT                 CVELEKLRKGTSAQGFLPTQKFPPKQKPHAPIPSETHTRQEPMEVDRTMRT
FT                 HLHYQNRPAQAYAHQENDSTAAQCSPTFFGTGSNTNSLSR"
FT   CDS           1044..4301
FT                 /product="Gypsy-5_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="PNFFWDRLQYQQPVKVKNTGLVLPFIKVPTEHGFIKL
FT                 LVDSGANINIISEKWANVIGSETVRSETKQFKSVAGIGSASQVVFLDIFSP
FT                 VLETKYKFVVYNFHDFFDGIIGTEIVFAHNINLITRAREIELTKPDNSKYK
FT                 IPLHFYYPKKMCREYSSVTIDQILDVESNTHIAHLTREERESLVTVLNQHS
FT                 HAFHDTDSKLTCTTNVECRIRTTDDAPVYQKSYPYPVAYKNEVEQQISKML
FT                 ADGIIRPSRSAWNSPLWVVQKKGNSECSDGEKKLRLVIDYRRLNQKTISEK
FT                 YPIPDIQNILDQLGGNKYFTTLDLASSFHQIKVNDLDIEKTAFSVNSGKYE
FT                 FLRMPFGLKNAPAIFQRAIDDVFREHIGKICYVYIDDLVVFGRNLTEHIHN
FT                 LKVILSTLEEANLKVQLQKSKFLCQSVEYLGYIITLDGIRPNQAKILTIKN
FT                 WPKPTNTKELRSFLGMVGYYRRFIKGYADLTKPLSNHLRGKNNSDSSPIEL
FT                 TSEELKCFESMKQVISGNDILTYPDFDKPFLITTDASNYAIGAVLSQGEVG
FT                 KDKPIHFASRTLNKREENFSATEKEMLAIYWSLKVFRNYIYGQKFKIITDH
FT                 QPLTFSLSSKNVNTKLKRWKSYLEEHDYEMVYTPGKNNVVADALSRVQIFS
FT                 LTSTQHSAEEDSSDMIECTEAPLNAFKLQIVLEKDANEDILVSYPFPGFKK
FT                 VIIRMHNFTEQSLTDIIKKYFIPNKLTGLNCSEEILGKFQNIFKEYSSTRM
FT                 YKIRFTQNILKDITNTEEQENIIQVEHERAHRGIEENKRKILRKFYFPKMT
FT                 QKIRNFIKVCDACNTCKYDRRPLKVQLQETPIPNHPFEILHLDIYQIDGES
FT                 FLSSVDKFSKFGRMIPIKSKQTIHIRKAFEQTITSYIIPSIVVTDNEKSFL
FT                 SAEIRGIMLDLNITAYITPSNKSEVNGQVERFHSTITEMYRIQKRLQPNYS
FT                 TKRRMAIVVGKYNDTIHSVTKKTPKEILLGISQNPASVEEIDEVRNRIYDE
FT                 VIVQLKQAQSKQQKTHNKLRQVPPQLEVGQEIFVKDKVFKGKEKPIFKRNF
FT                 VQDDKRVTVQNENNFKIHKTNVKNLIISK"
XX
SQ   Sequence 4369 BP; 1575 A; 818 C; 817 G; 1159 T; 0 other;
     ggcgcccgaa ttaaaagaaa aaaattagta aacgtataag ctcctagtac tggagtgaag        60
     ctacctatag ctgtctttgt tcaaccagag aatacgacac ccagccttag agctattgcc       120
     ttccaactgg tgatttgcgg tgttgtagcg cgaataggtg cactaattta ttcatcgtga       180
     aagaccgttc gatcattttt ttttgtaatc tacgtctacc tagttagaat ctagttagaa       240
     aaaaaaatgg aacaacgcca agaagaaatg aaattcttca tacaaatggg acaggtccct       300
     gacatcctta aaatgttgcc ggaatttgac ggtaacccga aacatctcaa cacctgggtt       360
     gaggatgtcg acggaatata caactactat tccgcatttg caaattgccc gacgcaattt       420
     ggaataatag aacgtacagt gcgtagaaaa ataattggtg cggcatcgga cgctttacat       480
     gccagtaatg taggatttga ttggtcagca atcaaagaag tgttggtgaa gaagttcagt       540
     gatcgtcgtg atttgatgag tttagattac gaacttacta caattaagcg taagaactat       600
     gaaaatatcg aattatactt cggtagagtg aacgaacttc ttacatttat tacaaaccac       660
     attcaaaata atgttaagta taattctcct aaccatgcgt ttttagatta ttttaaagat       720
     aaagccgtag atagttttat aaggggatta aatagtgact taggaatatt agttaaaaca       780
     gctgcgccag acagcttgaa taaggcatat gaactttgtg tagagctcga aaaattacga       840
     aaaggtacat cggcacaagg tttcctacca acacaaaagt tccctccgaa acaaaaaccg       900
     cacgcaccaa taccgagcga aacgcacacg cgtcaagagc cgatggaagt agatcgtacc       960
     atgcgtacac atttgcatta tcaaaaccgg ccggctcaag cttacgctca ccaagagaat      1020
     gatagcacgg cagctcagtg tagcccaact ttttttggga caggctccaa taccaacagc      1080
     ctgtcaaggt aaaaaacact gggttagtgt tgccgtttat taaagtgcct acagaacatg      1140
     gttttattaa actcctagtc gatagtggtg caaatataaa cattatttcg gagaagtggg      1200
     caaatgtgat agggagtgaa acagttagaa gtgaaacaaa acagtttaaa agtgttgccg      1260
     ggataggaag tgcttcgcaa gtagtttttc ttgatatttt ctctccagtg ctagaaacaa      1320
     aatataaatt tgtggtgtac aactttcacg acttttttga tggcataatt gggactgaaa      1380
     tagtatttgc acacaatatc aatttaatta cacgtgcccg agagatcgaa ctcacaaagc      1440
     cggacaatag caagtataaa ataccactgc atttctatta tccgaaaaaa atgtgtcgtg      1500
     agtatagtag tgtgacaatc gatcagatac ttgacgtaga atctaacaca cacatcgcac      1560
     acctaacaag agaagagcga gaatctctcg ttacagttct taaccaacac agtcatgctt      1620
     ttcacgatac agactcaaag ctgacgtgta ccactaatgt cgaatgtcga ataagaacca      1680
     cagatgatgc accggtgtac caaaaaagct atccctaccc cgtcgcttat aaaaacgaag      1740
     tggaacagca aatttcaaag atgttagcgg acggtattat tcgtccttca cgatccgcct      1800
     ggaactcgcc actttgggtc gttcaaaaaa agggaaacag tgaatgttct gacggagaga      1860
     aaaagttacg attagtgatc gattataggc gtcttaatca gaaaaccatc tctgaaaaat      1920
     accctatccc agacatacaa aatattcttg accagttagg tgggaataaa tatttcacta      1980
     cactcgacct tgcttctagt ttccatcaaa ttaaggtcaa tgatctcgac atagaaaaaa      2040
     cagcattctc tgttaatagc ggaaagtatg agtttttacg aatgccattt ggcttgaaaa      2100
     atgcgccagc cattttccaa cgtgcaatag acgatgtgtt tcgtgaacac ataggaaaaa      2160
     tttgctatgt ctacatagac gatcttgtgg tttttggacg caatttaacc gaacatatcc      2220
     acaacttaaa agtaattttg tccactttgg aagaagcgaa tcttaaagtt cagctacaaa      2280
     aatcgaaatt tctttgtcaa agtgtggaat atctcggtta tataattacg ttggatggaa      2340
     taagacctaa ccaagctaag atattgacca taaaaaactg gccaaaacca actaacacaa      2400
     aggaattaag aagtttttta ggcatggtcg gctactatcg acggtttatc aaagggtatg      2460
     ctgatctaac taaacccttg tctaaccatt tacgaggaaa aaataattct gattcttcac      2520
     caatcgaact tacatcagaa gagttaaaat gtttcgaaag tatgaaacag gtaatatcgg      2580
     gaaacgatat tcttacgtac ccagacttcg acaaaccctt tctgataaca actgatgcct      2640
     ctaactacgc cataggcgcc gtgctcagtc aaggtgaagt ggggaaggat aaaccaatac      2700
     attttgcctc gcgaacgctt aacaaaagag aagaaaattt ttcagcgact gaaaaagaga      2760
     tgttagcaat ttattggtcg ctgaaagttt ttcgaaacta catctacggt caaaagttta      2820
     aaatcataac agaccatcag cctctaacat tttcactatc gtcaaaaaac gtcaatacca      2880
     aactaaagcg ctggaaatct tacttagagg aacacgacta cgaaatggtg tatacacctg      2940
     gtaaaaataa cgtggttgcc gacgcgctca gtcgcgttca gatatttagc ctaacgtcaa      3000
     ctcagcattc tgctgaagaa gacagctcag acatgattga atgtacagaa gctcctctta      3060
     acgctttcaa gcttcaaata gtgttagaga aggatgctaa tgaggatatt ctagtttcct      3120
     atccttttcc cgggttcaaa aaagtaataa ttagaatgca caattttaca gaacagtctc      3180
     ttacggatat tattaagaaa tacttcattc ctaataaatt aaccggtttg aattgttcag      3240
     aagaaatcct aggaaaattt caaaatatct tcaaagaata ttcaagcaca agaatgtata      3300
     agatacgttt cacgcaaaat attttgaagg atattacgaa cacagaagaa caagaaaaca      3360
     ttatacaagt tgaacacgaa agggcccatc gaggcataga ggaaaacaaa cgtaaaattt      3420
     tgaggaaatt ttattttccc aaaatgacac aaaaaattag aaatttcatt aaagtttgcg      3480
     atgcgtgcaa tacatgcaaa tatgataggc gaccattgaa agtacaattg caggaaacac      3540
     ctataccaaa ccatcctttt gagattttgc acttggacat ataccagata gacggggaaa      3600
     gctttctttc aagtgttgat aaattttcga aatttggaag aatgatcccc attaaatcaa      3660
     aacaaacgat tcatattaga aaagctttcg aacaaacaat tacatcatat ataattccat      3720
     ctattgtagt aacggataac gagaaatctt ttctatcagc agaaattcga gggataatgc      3780
     tagaccttaa tataacagct tacatcacac caagcaataa atctgaggtt aatggtcaag      3840
     tagaacgctt ccattctacg attaccgaaa tgtatcgcat acaaaaacgt ctgcaaccta      3900
     actactcaac taaaaggcgt atggcgatag tagtaggaaa atacaacgac actatacata      3960
     gtgtaactaa gaaaactcca aaagaaatcc ttttaggtat ttctcaaaat ccagcatccg      4020
     ttgaagaaat tgacgaagtt agaaatagga tttatgatga ggtaattgta caattgaaac      4080
     aagctcaaag caagcaacaa aaaactcata ataaactaag gcaagtacct ccgcagttag      4140
     aagtagggca agaaatcttt gtaaaagata aagtcttcaa ggggaaagaa aagcccatat      4200
     ttaagaggaa tttcgtgcaa gatgacaaac gtgtcactgt tcaaaatgaa aataacttta      4260
     aaatacacaa aacaaatgtc aaaaacttaa tcatctccaa ataactatat accgattttt      4320
     ttttggctct aaagttgatt caggagaatc aacactagaa ggatggggc                  4369
//
ID   Gypsy-5_AnMe-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-188
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6808-6808 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100.0% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 188 BP; 62 A; 24 C; 39 G; 63 T; 0 other;
     agttaccacg ttgtaaatat cttattagta tttgtatagg ttattagata tagcgttaag        60
     tagtattgcg ttgatagtgt tagatctaat tagaagtatg cgtgaaacac atatgtaatg       120
     gatatttttg gtagaataaa ctcagtctgt aagcaacctc cgaagagaag cgactcgact       180
     cgataact                                                                188
//
ID   Gypsy-5_AnSt-I repbase;    DNA;    INV; 4419 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4419
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 790-790 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..692
FT                 /product="Gypsy-5_AnSt-I_1p"
FT                 /translation="MSLNQDAETPSRNRQHEEVNGQPNGDWLQELFRKQQE
FT                 MLVNQQQAFMVQQEQLISTILRTVRTEPKPVSSEQIVDLLAGSIKEFNYDP
FT                 DARVTFAGWYARYEPLFEKDAERLDDGARVRLLLRKLGMAEHERYCSYVMP
FT                 AKANDFDFATTLRSLKLLFGSQESKVSQRFKCLQLTKSATEDHVMFACRVN
FT                 KATVEAELGGLSRKR"
FT   CDS           668..4408
FT                 /product="Gypsy-5_AnSt-I_2p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IRRFVEEALKCLIFVCGLKDERDADIRMRLLSNIEER
FT                 NDVTLGQLTEDCQKLINLRRDTAMIEGEVRQISRVSDDSKFPWHKKHHSQP
FT                 QGSRPQGSKPPVECWLCGGNHFARHCSFKRHTCVRCRKTGHKEGFCDTASR
FT                 VYRGRSLKRVRTVLVNAINSVNRGFVSVSLAGHAVRMMVDTGAEITIISER
FT                 NWQRIGRPMLRQASIKAKSATGNCLELLGEFQCMLTIGQRSEEGTVRVTKE
FT                 DLMLLGKDVMELFGLWDVPLTCVCNKVTDVTTNSQEVTKLEEYKDLFSHGL
FT                 GHCTKMKVRLELKDDAIPVFRPKRPVSYAMLPAVDEELNRLEKEGIISRVN
FT                 YSAWAAPIVVVRKANGSLRICGDYSTGLNNALRPYEYPLPLPQDIFASLAN
FT                 STIFSQIDLTDAFLQIEVDEECRELLTVNTHRGLYSYNRLPPGVKVAPGAF
FT                 QQVMETMLVGLKDVAVYLDDIVIGGADTVAHNKNIRAVLDKLKEYGFRIRP
FT                 EKCNFMQQQIRYLGHILDRNGLRPDPAKIEAITKMPSPKQPSELRSFLGAV
FT                 NYYGKFVPQMRNLRYPLDELLKRDKGWHWSTECQEAFEMFKRMLSSDLLLT
FT                 YYDPQKDIIVAADASSVGVGATISHKMPDGTVKVVQHAARALTKAEEGYSQ
FT                 PDREGLAIIFAVTKFHRMIFGRKFTLQTDHAPLLRIFGSRNGIPVYTANRL
FT                 QRWALTLLMYDFKIEYVPTDKFGNADVLSRLIDRHERPEPEFVVASINADK
FT                 EVQCLVRCITEVMPLTFEDIVRGTSNDVKLEQVANYVQNGWPTRKLVDTEL
FT                 RSFQVRSESLSTFNGCILFGDRLVIPRDQRLKCLAQLHKGHPGIERMKALA
FT                 RSYVYWPGLDRDIEEKVKRCSNCASAAKSMAHSIPIPWPAAKGPWQRVHVD
FT                 FAGPIGGMHYLLVVDSYSKWPEIVATPTITSSATIQILRGIFVRFGMPNTL
FT                 VSDNGAQFTSAEFSTFCTVNGIEHLRTAPFHPQSNGQAERFVDTFKRALKK
FT                 LEGEENTIQEALDVFLITYRSTPHKLLENDQSPAEVMLGRRMRTCMELLRH
FT                 PAEPVINETNCAILSKVYNMNDQVYVKRYFRNKWKWVRGIVQGKLGRVMYE
FT                 VLTEDNKLQRSHVNQLRRRYDNTQPVLNKPRMLDVLLDTWGIDACKPASSS
FT                 VSPCIPHHQTASPLSSSSSSSISPSSSFPSVLPSSPLYSSSLAPAEGSTSM
FT                 SPGFATADSGPTTPVEHLRRSTRVRRPPQWMEPYRRN"
XX
SQ   Sequence 4419 BP; 1314 A; 869 C; 1152 G; 1084 T; 0 other;
     gtggcgacga gaagttaaac gaatctgcga agtgcagtcc agcaacgaga aaataacgtg        60
     cagcaccgag aagcgtcatg agcttgaacc aggacgccga gacgccatcg cgaaaccgtc       120
     agcacgagga ggtcaacggc caaccgaatg gcgattggct tcaggagctg ttcagaaaac       180
     aacaagaaat gctcgtaaac caacaacagg catttatggt gcagcaggaa cagctgatta       240
     gtacgatcct ccggaccgtg cgtaccgagc cgaaaccggt aagttccgag caaatcgtgg       300
     atttgctggc aggaagcata aaagagttca actatgaccc ggacgcaagg gtcacgtttg       360
     ccggttggta cgcgcggtac gagccgcttt tcgagaagga tgcggagagg ctcgacgacg       420
     gtgcgagagt gcggctactt ttacggaagc tcggaatggc cgagcacgag cggtattgca       480
     gctacgttat gccggcgaag gcgaatgatt tcgattttgc aaccacgctg aggagtttga       540
     agctgctgtt tggctcacag gagtctaaag tgagtcaacg tttcaagtgc ttacagctaa       600
     cgaaaagtgc aacagaagat catgtaatgt tcgcgtgccg tgttaacaaa gcaactgttg       660
     aggctgaatt aggaggtttg tcgaggaagc gttgaagtgc ttgatttttg tgtgcggtct       720
     taaagatgag agagatgcgg atatacgtat gcgtctgtta agcaatatag aagagcgaaa       780
     tgatgttact ttaggccagt taacggaaga ttgtcagaaa ttgataaatt tgcgtcgcga       840
     tacggcaatg atagagggag aagtgcgtca aattagtagg gtcagtgatg acagtaaatt       900
     tccgtggcac aagaagcatc attcacaacc tcaaggaagt aggcctcaag gtagcaaacc       960
     gcccgtagaa tgttggttat gtggaggaaa tcattttgcg cgtcattgtt cgttcaagag      1020
     acacacgtgt gttcgttgcc gaaagacggg acataaggaa ggattttgcg atacagcatc      1080
     acgtgtttat cgaggtaggt cactaaagcg tgtgcgtacg gttttagtga atgcgatcaa      1140
     ttccgtgaac cgtggttttg ttagtgtcag tttagcagga catgctgtga gaatgatggt      1200
     agacacaggt gccgaaataa ccataatctc tgagagaaac tggcagcgca tcggtagacc      1260
     aatgcttcga caagcatcga ttaaagcgaa atcggcgacc ggcaattgtt tagaattatt      1320
     gggcgagttc caatgtatgc tcacgattgg gcagcgatca gaagaaggta cagtgcgcgt      1380
     tacgaaagaa gacctcatgt tattagggaa agacgtaatg gaattgtttg gtttgtggga      1440
     tgtaccacta acatgcgtgt gcaataaggt gaccgacgtc acaacgaatt cccaggaggt      1500
     aacgaaactc gaagagtata aggatttgtt ttcccacggg ttgggacact gtaccaaaat      1560
     gaaggttaga ctagaactta aagatgatgc gattccggta tttagaccaa aacgtccagt      1620
     gagctatgcg atgctcccag cagtggatga ggaactaaat aggctcgaaa aagaaggaat      1680
     tatatctcgc gtgaattatt cagcatgggc agcgcctatc gtagtagtgc gcaaggcaaa      1740
     cggttcgtta aggatttgtg gggattactc cactgggctg aataatgcgt tacgaccgta      1800
     cgagtaccct ttaccgctcc ctcaagatat attcgctagc ctagctaact cgactatatt      1860
     cagtcagata gatctgaccg atgcgtttct gcaaattgaa gtagatgagg aatgtcgaga      1920
     actgctaacc gtaaatacgc acagaggctt gtattcttac aatcggcttc cacctggagt      1980
     taaggttgcg ccaggcgcct ttcagcaagt aatggaaaca atgttagtag gacttaaaga      2040
     tgtggctgtc tacttagacg acattgtcat aggtggagca gatacggttg cgcataacaa      2100
     gaatattaga gctgtacttg ataagctaaa ggaatacggg tttaggatac gccctgagaa      2160
     gtgcaatttt atgcaacagc agattaggta cctagggcac attttggatc gtaatgggtt      2220
     aagacctgat ccggccaaaa tagaggcgat cacgaaaatg ccatcaccaa aacagccttc      2280
     agaattgcga tcatttcttg gtgccgttaa ttattatggg aaatttgtcc cacagatgcg      2340
     caacctacga taccctttag atgagctttt gaaacgagat aagggttggc attggagcac      2400
     agaatgtcag gaagcatttg agatgtttaa gcgaatgtta agctccgatc ttttgcttac      2460
     atactatgat ccgcaaaaag atataatagt ggccgcggat gcgtcttcag taggagtagg      2520
     ggctacgata agccacaaaa tgccggatgg aactgtgaaa gtagtgcagc atgcagcgcg      2580
     agcgctgaca aaagcagaag aaggttacag ccaaccagat cgagagggcc tagctattat      2640
     atttgctgtc acgaagttcc atcgtatgat tttcgggcgg aaatttacac tacagaccga      2700
     tcacgctccg ttattacgga tttttggttc acgcaatggt attccagtgt atacggcgaa      2760
     taggctacag cgttgggcct tgacattgtt gatgtacgat tttaagatcg aatatgtgcc      2820
     gacagataaa ttcggaaacg cagacgttct atcacgttta atagatagac atgaaaggcc      2880
     agaaccggaa tttgttgtag caagtattaa tgcggataaa gaagtgcaat gtctagttag      2940
     atgtatcacg gaagtaatgc cacttacgtt tgaagatatt gtgcgtggaa ccagtaacga      3000
     cgttaaattg gaacaagtag cgaactacgt tcaaaacgga tggccgacta ggaaactggt      3060
     ggatactgaa ctcagaagtt ttcaagttag gagcgaatct ctatccacct ttaacggatg      3120
     catactattt ggcgatcgat tagtgattcc aagagatcaa agattaaagt gtttagctca      3180
     gcttcataaa ggccacccgg gcattgagag aatgaaggcc cttgcgagaa gttacgttta      3240
     ttggcccggg ttggatcgcg acatagaaga aaaagtaaag cgttgtagta attgtgcaag      3300
     tgcggctaag tcaatggctc atagcatacc aatcccatgg ccagcagcta aaggtccctg      3360
     gcagcgcgtg catgtcgatt ttgccggacc aataggagga atgcattatc tgttagttgt      3420
     tgattcttat tctaagtggc cggagattgt agcgactcca acaatcacgt ctagtgcgac      3480
     tattcaaatt ttacgaggga tatttgttcg atttggaatg ccgaatacct tagtgagtga      3540
     taatggggca cagttcacga gtgcagaatt tagtacattc tgcacagtta atggtataga      3600
     acatctgcgc actgcaccct tccatcccca atcaaacgga caggccgaaa gatttgtaga      3660
     tacctttaaa agggctttaa agaaattgga aggggaagaa aatacgatac aagaagcttt      3720
     agatgttttt ctaataacgt accgaagtac accacacaaa cttctagaga acgatcaatc      3780
     gccagctgag gttatgttag gccgtcgtat gcggacttgt atggaattat tacggcatcc      3840
     agctgagcca gttataaatg aaacgaattg cgcaatacta tcaaaagtgt acaatatgaa      3900
     tgatcaggtc tatgtaaaaa ggtattttag aaacaagtgg aaatgggtgc gcggcatagt      3960
     tcaagggaag ttaggaagag taatgtatga agtgcttact gaagataaca agctacaaag      4020
     atcgcacgta aaccaacttc gtagacgata tgataatact cagccggttt tgaacaaacc      4080
     ccgtatgtta gacgtgctgt tagacacttg gggtatagac gcgtgtaagc cagcatcatc      4140
     atcagtatcg ccctgtatac cgcatcatca aacagcatcg ccgttatcat catcgtcatc      4200
     gtcatctata tcgccgtcgt catcgtttcc gtcagtactt ccgtcatcac cattgtattc      4260
     gtcatcgttg gcaccagcag agggaagtac ctcaatgtct ccgggatttg caaccgccga      4320
     tagcggacca acaacaccgg tggaacatct acgccgatct acgagggttc gaagaccgcc      4380
     gcagtggatg gagccttacc gccggaatta ggagggaga                             4419
//
ID   Gypsy-5_AnSt-LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-225
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 779-779 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 225 BP; 54 A; 44 C; 58 G; 69 T; 0 other;
     tgttgtggag atacggttgt gtcgaaaccg tgcttagtac acagccttgt gtactaggct        60
     tcacaacccg acgagtgaca aatgtcactc ggtgcggtgt gtgtgtatgc ggagtttatc       120
     tctctcttct atcgccagcg gtcgccgaag caggatgcgt gaaaatacgt taagtaattg       180
     tattcaaagt attgatattg tacgtgtgtt attaccgtta caaca                       225
//
ID   Gypsy-5_BM-I repbase;    DNA;    INV; 4020 BP.
XX
AC   nscaf3063;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_BM_;
KW   Gypsy-5_BM-LTR; Gypsy-5_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4020
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 985-985 (2010).
XX
DR   Genome; nscaf3063; Positions  960604  956585.
XX
CC   Positions [3063-3581] - Integrase core
CC   'GGCAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2244..3803
FT                 /product="Gypsy-5_BM-I_1p"
FT                 /translation="MTPEQQEAFNSCKKSLSEAVMLAHPGPAAQLAIFTDA
FT                 SDTSMGAALHQKCKDSWKPLGFFSRRLSSAEKKYSPYDRELLAIYNAIRHF
FT                 RHMVEARPFTVFTDHKPLSFAFSHNREKCSPRQFRYLDYISQFTTDIQYIQ
FT                 GSQNVVADALSRIEEISRIIDYTALAASQDSDLELQQLLQKGSALDLKKIK
FT                 IPDSDKEIYCDISTPNPRPYMTVAFRKLIFDALHKLSHPGAKATARMVTRR
FT                 FIWPGAQKDCRQWVSECTDCQKNKVHRHTQSPTSTFPVPSQRFSHVHMDIV
FT                 GPLPISGGFRYCLTVIDRFTRWPEAYPLEDITAEACARAFVAGWVSRFGCP
FT                 HRVTTDRGRQFQSELFRSVTNILGTQHRPTTAYHPACNGMVERLHRQLKAA
FT                 IRCHQNSSWTEVLPLVLLGIRSAWKEDIKASAAELVYGEPLRLPGEFFVPS
FT                 NAIPALDITDFASRLRLQMAKLSPEPASRHGQKTFYIPKDLATAEYVFLRQ
FT                 DAVRRSLEAPYTGPYKVIERGNKT"
XX
SQ   Sequence 4020 BP; 1185 A; 1043 C; 884 G; 908 T; 0 other;
     attggtgacc ccgacgtgat ctgatagaag atgagtcgtg agaagggaca acttccatcg        60
     ggaagcagag acgcttctgg agatcgtaca gaaggaggca tgggtgaaac cgtaggaatc       120
     tacaaagttg gagtgaaaat accgccattt tggcccgagg agcccggatt gtggtttgcc       180
     caggttgagg gtcaattttt aatttccggc atcacaacag atgcgacgaa attctaccat       240
     gttgtcgcac aactcgacca gcaatatgca gcggaggtaa aagatattat tatttcccca       300
     ccagctgaaa ataaatacat aaaattaaaa actgaactga caaaaagatt gtcggcgtca       360
     caagaaaaaa aagtcaaaca gttattgatg cacgaagaat taggagatcg aaaaccctcg       420
     caattcctgc gacatttaca aacattagca ggacctaacg tacctgattc gttcctacgc       480
     acgctatggt cgagccgtct gccacacaat attcaaaccg taatagcgtc acaaacggat       540
     gtaccactcg agactgttgc agacctagca gatcgcattt atgaaattgt tccgataccg       600
     gctgcacctg tgatagcagc agctgatggc agtagtgtta taaacaacat ggcaaaacaa       660
     gttgaagcat taactaaaga agtggcatca ttgaaggcac ggctgtctcg cggtccaatt       720
     tggcatcggc gtaatcagcg aagccagtct caagagaatc atcgttctcg ctctcgctct       780
     cgctcacgat ccggagattg gaatataagc tactgttggt accacaaccg atttggaggt       840
     aaagccacac gatgtacaac accttgcaaa ttcaacgcga cttcgggaaa cgcacccggc       900
     agccagaggt agcggctaac ggctgcccat ctaagccagg ccgcttattc attacggata       960
     gaaacagcaa gttgtcattt ctcgtcgata caggatctga cctttgtgtg tatccaagat      1020
     ctgcgctgag tcaacctcgt actaaaaccg actaccaact ctatgccgca aatggttctc      1080
     cgatcgctac ttacggttgg atccacttac aactcaacat tggtctacgc cgcgcctaca      1140
     gatggcgttt cgtggtggcc gatgtttcta aaccaataat tggtgctgat ttcctccgtt      1200
     tttatgattt gctcgtagac gtgaggaacc accgcctggt cgacgggttg acatctctct      1260
     gtgctacagc tacaccagaa aaagaggcaa atgacattgc atcaattaaa gtgatatctg      1320
     gcgactccat atatcaccag ctattgcgtg aatatcctgc aattacacgt ccagctggaa      1380
     cccaacgaga aatcaaacac ggaacagagc accacatccg cacgacacca ggtcctcccg      1440
     tttccagtcg accgagaaga cttccacctg accgactaaa gattgcgaag caggagttca      1500
     acgaaatgaa tacgaaacgg tacggcgcgt aggtccgaga gttcgtgggc atcaccgctt      1560
     cacctcgccc ccaaaaaaga caacggctgg cgaccttgtg gggactatcg ggcactgaac      1620
     gcgcgtacaa tcccggataa atatccaatc cgccacatcc aagacttctc gcagcaacta      1680
     gcagggacga aggtctactc aaaaattgac ttagttaaag cttaccatca gataccgatt      1740
     cacaaggccg atatcccaaa ggcagcaata actacaccgt tcggattatt tgaattccca      1800
     tatatgacct tcggactgcg aaacgcggca cagacctttc aaagattcgt agacgaaatg      1860
     cttaaggatc tgccattttg ttacgggttc ttagatgata ttttacttgc ttctccagat      1920
     gagacctccc acctccaaca ccttcgacag ctgttccagt gcttagcaga atatggcatg      1980
     ctcattaaca ctaacaagtg tgaatttggt aaggcttgta tcaccttcct gggccatgag      2040
     gtaagcgcag aaggcattaa gccgctacca gaaaaagtgc aggcaatcat gaactaccca      2100
     ccaccgacaa cagtaaaaga acttcgccga tttttaggaa tgtacaattt ttaccgtcga      2160
     tttgtaccta atgcggccaa atttcaaagt ccattaaacg acatactagc ggacctaaaa      2220
     cgaaaggaac acagagcatt acaatgactc ctgaacaaca ggaagctttc aatagctgca      2280
     agaaaagtct ttccgaagca gtgatgctcg cacatccagg acctgctgca cagttggcca      2340
     tattcacaga cgcgtccgat acgtccatgg gagccgcact tcaccaaaag tgtaaagaca      2400
     gttggaagcc actggggttt ttttcacgac gcctctcttc tgcagaaaag aagtatagcc      2460
     catatgatcg tgagctgctg gctatataca acgcaatacg ccattttcgc catatggtag      2520
     aagcaagacc attcacagtt tttacggatc ataagcccct gtcatttgct ttctcacata      2580
     atcgtgaaaa atgctctcca aggcaatttc ggtatctgga ctatatatcg caatttacaa      2640
     cggatatcca gtatatccaa ggaagccaaa acgttgtagc tgacgcgctc tcccgcatag      2700
     aggaaattag tcgcattata gactacaccg cactcgcagc atcacaagac tcggatctag      2760
     aattacaaca gctgctacag aaaggttcag cactagatct gaagaaaatt aaaataccag      2820
     actccgacaa ggaaatttac tgcgatattt ccacaccaaa tccacgacca tatatgacag      2880
     tggctttcag gaaacttatt tttgacgcgc ttcataaact gagccatcca ggtgcaaaag      2940
     ccactgcaag gatggttacg aggaggttta tttggcctgg agcacagaaa gattgcagac      3000
     agtgggtcag tgaatgcaca gattgtcaga aaaacaaagt ccaccgccat acccaatcac      3060
     ccacttctac ttttcctgtt ccttcccaac gcttttctca tgtccatatg gacatcgtgg      3120
     gaccattacc gatttcaggt ggctttaggt actgtctcac agtcatcgac cgttttactc      3180
     gttggcctga ggcataccct ctcgaagaca tcacggcgga agcatgtgcc cgcgccttcg      3240
     tcgctggctg ggtgtcccgc ttcggctgcc cacatcgcgt cacgacggac agaggacgtc      3300
     agtttcaaag cgagctcttc cgcagcgtca caaacattct gggtacacag catcgtccta      3360
     ccacagccta tcacccagcc tgcaatggga tggtggaacg gctccatcga cagttgaagg      3420
     cggccattag atgtcaccag aactccagtt ggacggaagt tctacctctc gtactcctgg      3480
     ggatccgtag cgcatggaag gaagacatca aagcttcagc agcggagttg gtttacgggg      3540
     aacccttacg actgccaggc gaattcttcg taccatccaa cgccatacca gcactcgaca      3600
     taaccgactt cgcatcgcga ctcagactcc aaatggcaaa gctgtctcca gaacctgcaa      3660
     gtagacacgg tcagaaaaca ttctacatac caaaagacct ggcaacggca gagtacgtgt      3720
     ttctccggca agatgcagtc aggcgttcac tggaagctcc atacaccggc ccctataaag      3780
     tcattgaaag aggaaacaaa acttaaaatt cttacaaacg aaagagaaac gactgtttcc      3840
     attgaccgcc tgaaagcagc acacatggcc aaagaggatg ccaaaacggg gaacaccaac      3900
     atcagcacta ttccacctgc agttgatcca accccttcaa tgaagacgag atcaggccgg      3960
     gccgttcact ttccagacta ctatcgacct caataacctt cggtctcagc gggggagtag      4020
//
ID   Gypsy-5_BM-LTR repbase;    DNA;    INV; 270 BP.
XX
AC   nscaf3063;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_BM_;
KW   Gypsy-5_BM-I; Gypsy-5_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-270
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 986-986 (2010).
XX
DR   Genome; nscaf3063; Positions  956584  956315.
XX
SQ   Sequence 270 BP; 79 A; 57 C; 52 G; 82 T; 0 other;
     tgtaggaacg atacctgtgt gctcagtact cgtattgtaa aatacaaaat cgcttgcgct        60
     cggtcgcagc gactagtcga gccacgatct gacggcgaac gcacgcgcaa tttcaactcg       120
     gccaccacgt ctcaatatca cgcgatctca tgtttaagtt ttattttagt acacccggaa       180
     attttctgtt ttgatttgtt ataacattta aataaactat tgtgaagtga aaagacttta       240
     attcgaacta taaagagctt gtgaacttca                                        270
//
ID   Gypsy-5_BrCo-I repbase;    DNA;    INV; 5254 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-5254
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1405-1405 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           139..4059
FT                 /product="Gypsy-5_BrCo-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MADGDNNDQSIGETPMVVPTVGSGGNSDLGNGNIPPV
FT                 NNSVQRIQLKIPPFWKKNPQLWFIQLEAQFTTTNITTEQTKFNHIVGVIES
FT                 DILDYVSDIVLAPPARNQYQAIKARLIKQFTATDQQKLKALLEELTLGDMR
FT                 PTDLLRKMKALACKKVGDEFLRTLFLQRLPTTIHTFLATSVAPIEELAQLA
FT                 DQMFEVTQSSSVSVQEVSSPSNDLLDGLVNVVHKLEDKVETLTQGFRRSWN
FT                 SSGQKSRNRSTTPAKASNVKPNKLCFYHKRFGSKADNCSQPCSWVNRKSKE
FT                 IGQPAVRTLTQGPLINRLFVTDKNSNRDFLVDTGADISVVPPTSKERLNAP
FT                 CLFNLFAANGSKIKTYGSKSITLNLGLRRPITWLFIIADVQSPIIGADLLK
FT                 KFDLLIDVKNGNLIDNVTTLPIQGKIKQASIDIQVKSLTNIGIYHELVQEF
FT                 PSLLDLSSFKNPLKKHNVRHQIVTNCQPIFSKPRRLNPEKLKVAKAEFDRM
FT                 LELGICRPSKSPWASPLHIAPKPSGGWRPCGDYRRLNAQTLPDRYPISHIH
FT                 DFSNFLNGKKIFGVVDLVRAYNQIPMADEDIQKTALITPFGLFEFPYMTFG
FT                 LCNAAQTFQRFVNSIIQGLDFCFAYLDDILVASRDEQEHLEHLRILFGRLN
FT                 DYGVVINVDKCVFGQKEVRFLGYSIDVNGTKPLQSKVSSIVNFPLPETIDK
FT                 LKRFLGMINYYRRFIPKAAHMQIPLLDCTKGNKKNDKSVIEWNPERLGAFE
FT                 LCKKALADAALLAHPSPDAKLCLMVDASDTAIGGVVNQLENNHWKPLAFFS
FT                 KRLSSAERKYSTYDRELLSIYASIKHFQNLLEARTFTIYTDHKPLVFAFQQ
FT                 ANEKATPRQLRHLDLIGQFSTDIQHISGVDNVVADTLSRINSISTVSLSST
FT                 VDYKLIALKQLEDEELSQLRKQKTKLKILDIQFHDIILACDVSTTEPRPYV
FT                 PSELRKQVFEKVHNLAHAGVKATQKLISKSFVWPSMSKDIQVFCKSCLACQ
FT                 RTKVSKHNQAAFEQIKTPNARFEHIHIDIVGRLPESEGFSYCLTIIDRFTR
FT                 WPEAIPIQDMSAETVAKAMFLNWIARFGVPLRLTSDQGRNFESSLFTELNK
FT                 LLGVQKFRTTAYHPQANGILERWHRTLKNSIKCHGNIRWTETLPTVLLGLR
FT                 SVILQNVNASPAELVYGTNLRLPYFYFDKIKPSLVSNASTFVERLKDAMAE
FT                 IKPIPSSNHNKQNVFVHKDMSSCTHVFVRSDGVKKALQPTYTGPFEVISRN
FT                 EKFFTIKIGKINKVISVDRLKPSFDFNECVSVKKPLKKKVRFAKNH"
FT   CDS           4243..5121
FT                 /product="Gypsy-5_BrCo-I_2p"
FT                 /translation="MAPNKKLTENPEWLNALQQILRNQELAIREIRIIAME
FT                 NQQFLRGMRNNPIQSTNPTQTQRSSGQSSVPGQPFSANPSFSASQTSHPRQ
FT                 SSAKNRQSVVQRSVQRTRVSVRQASVAVRQAAIPIKRPTRPSAQPGRFCWF
FT                 HRQFGRASVNCLPPCDFVDHMTQQQSMRNLATIQVTPTSHPHQPTVPIIAP
FT                 ALEAPAQHTFSPPKPTPSTSDQKAPEKSTAMEIVNAATSKVESRFPLERSS
FT                 KRGPSFSSSDSGPESPSKAQKPDDWNAPEDKNDEESSSSSSSSSEEENEEN
FT                 K"
XX
SQ   Sequence 5254 BP; 1643 A; 1271 C; 953 G; 1387 T; 0 other;
     actggtgacc ctcgacattt ttcgtcttta aaatcattgc gcagtgcaaa caatacgttt        60
     caactgctgt tcagaaaatt cgttgctttc aagttcaact taaattttct ctattttcac       120
     tacacttgca tatctactat ggcagatggt gataacaacg atcaatcaat cggagaaact       180
     ccaatggttg ttcctacagt tggtagtgga ggtaactctg atttaggtaa tggaaatatt       240
     ccaccggtta acaattcggt gcaacgcatc cagctaaaaa taccgccatt ctggaaaaag       300
     aacccacagc tgtggttcat acagctggaa gcgcagttta ctacaacaaa cataacaacc       360
     gaacaaacca aattcaatca catcgtaggt gtaattgaat cggatattct cgattatgtt       420
     agtgatattg tactcgctcc acctgcgaga aatcagtacc aagcaatcaa agcccgcctt       480
     atcaagcaat tcactgctac tgatcaacaa aaactgaagg ctctcctcga agaattaacc       540
     ctcggagata tgagacccac ggatctttta cgtaaaatga aagctctcgc atgcaagaag       600
     gtaggtgatg aattccttcg caccttgttt ttgcaaagat taccaactac aattcataca       660
     ttcctcgcta cgagtgtagc acctatagag gaactagcac aattggcaga tcaaatgttt       720
     gaagttactc agtcttcttc tgtaagtgtt caagaagtct ctagtccctc aaacgacctt       780
     ctcgacggtt tagttaacgt tgtccataag ctggaagaca aagtcgaaac tctcacacag       840
     ggttttcgca ggtcttggaa tagtagtgga caaaaatcac gaaaccgatc gacgacgccg       900
     gccaaagcgt cgaatgttaa accaaataaa ctctgttttt atcacaaacg tttcggatcc       960
     aaagccgata attgctctca accctgtagc tgggttaaca gaaagtctaa agaaatcggg      1020
     cagccagcag ttcgtacact cactcagggc cccctcatta atcgactttt tgttactgat      1080
     aaaaactcaa acagagattt tttggtagac acgggcgccg acatttctgt ggtcccccca      1140
     acgtcgaaag aaaggctcaa cgctccatgt ctgtttaatc tcttcgcagc aaacggctct      1200
     aagattaaga cttacggaag caaatctata acgctcaatc tcggtcttcg ccgaccgata      1260
     acttggttat ttatcattgc agacgtgcaa tcaccaataa ttggcgccga tttattaaag      1320
     aaatttgacc ttttaatcga tgttaaaaat ggtaacctaa tcgataacgt tacaaccttg      1380
     cctattcaag gaaaaatcaa acaggctagc attgatatcc aagtgaaatc tctcacaaac      1440
     ataggaatct atcatgaact agtacaagag tttccttcgc tactcgatct ttcttctttt      1500
     aaaaacccat tgaagaaaca taacgttcgt catcaaatcg tcacgaactg ccagcctatt      1560
     ttttctaagc cgcgccggct taacccagaa aagcttaaag tagccaaagc cgaattcgac      1620
     aggatgctcg aacttggaat ttgccgtcct tcaaaaagtc catgggcttc tccattacat      1680
     atagcgccca agccatccgg cggttggcgt ccatgcggtg actaccgccg tcttaacgct      1740
     caaaccttac ccgatcgtta tccaatttct catatccacg atttcagtaa ttttttgaat      1800
     ggaaagaaaa tttttggagt agttgatttg gtaagagctt acaatcagat tccaatggcc      1860
     gatgaagaca ttcaaaaaac agctttgatc actcctttcg gactttttga gttcccttac      1920
     atgacattcg ggttgtgcaa cgccgctcaa actttccagc gttttgtcaa ctccatcatt      1980
     caaggactcg acttttgctt tgcgtatttg gacgatattt tagtcgcatc aagagatgaa      2040
     caagaacacc ttgaacattt aagaatcttg ttcggtagac taaatgatta cggtgtcgta      2100
     attaatgtcg acaagtgtgt gttcggtcaa aaggaggtac gttttctggg ctattcaatc      2160
     gacgtaaacg gaactaaacc tttacaatca aaagtttcct cgattgttaa ttttccacta      2220
     ccggaaacaa tcgacaaact caaacgtttc ctcggtatga tcaattatta ccgtcgtttt      2280
     attcctaaag cagctcacat gcaaattcca ttgctagatt gtacgaaagg taacaaaaag      2340
     aacgacaaat cggtaattga gtggaaccct gagcgcctcg gcgcattcga gctatgtaaa      2400
     aaggctttag ccgacgcagc cttgctcgcc catccgtctc cagacgcgaa gctctgtctc      2460
     atggttgacg catccgacac tgctatcgga ggggtggtaa atcaattaga aaataatcac      2520
     tggaaacctc tcgcgttctt ttccaaacgc ctttcctcag ctgaacgaaa gtattcaaca      2580
     tatgaccggg agctgttgtc aatctacgct tcaattaaac acttccaaaa tctgctggag      2640
     gcgcgtacat tcacgattta cacagatcat aaaccgctcg tttttgcttt ccaacaagcc      2700
     aacgaaaaag caactccccg tcaacttcga cacctcgatt tgatcggtca gttctcaaca      2760
     gatattcaac atatctctgg agtagataac gtggttgctg acactctgtc taggatcaac      2820
     agcatttcca cagtctcact gtccagcact gttgattaca aactcatcgc cttaaaacaa      2880
     ttagaagatg aggagctgag ccagctaagg aagcaaaaaa ctaaattaaa aatcctcgat      2940
     attcaatttc acgatatcat tttggcatgc gacgtttcaa ccacagaacc tcgtccatac      3000
     gttccgtcag aattaaggaa acaagttttt gaaaaagttc ataacctcgc tcatgcaggg      3060
     gtcaaggcaa cgcaaaaatt aattagcaaa agttttgtat ggccttcaat gagcaaagac      3120
     atccaagtct tttgtaaaag ttgtttagct tgccaacgaa ccaaagtcag caagcacaac      3180
     caagcagcct ttgagcaaat caaaacgcct aacgctcggt tcgaacatat tcatatagat      3240
     atcgttggaa gactcccgga atcagaaggt ttttcgtatt gtctcactat catcgatcga      3300
     tttactcgct ggcccgaggc aataccaatt caagacatgt ctgccgaaac agtagcaaag      3360
     gccatgtttc tcaattggat cgctcgtttc ggagtgccct tgaggttgac cagcgatcaa      3420
     ggccgaaact tcgaaagtag cttattcacc gagttaaata aactgcttgg ggtccaaaaa      3480
     ttccgcacta ctgcttatca ccctcaagct aacggaattt tagaaagatg gcaccgcaca      3540
     cttaaaaatt caatcaagtg tcacggaaac attcgctgga cagaaacact tccaacagtt      3600
     ttactcggtc tccgttcagt aattctgcaa aatgtaaacg catctccagc agagttagtc      3660
     tatggaacaa atttgcgtct tccttatttt tacttcgaca aaatcaagcc cagcctagtc      3720
     tcaaatgctt caacatttgt cgaacgatta aaagatgcaa tggctgaaat caaacccatt      3780
     ccatcttcta atcataacaa acaaaacgtt tttgtacaca aagacatgtc ttcatgtact      3840
     cacgtttttg tccggtcgga cggggttaaa aaagcgctcc agccgaccta taccggccca      3900
     ttcgaagtaa tttcacgaaa tgagaagttt ttcacaatca aaattggaaa aattaataag      3960
     gtaatttcag ttgaccgttt aaaaccttca tttgatttca atgaatgtgt ttcggtgaaa      4020
     aaaccactta aaaagaaagt acgtttcgct aaaaatcatt aaacacatca actgctataa      4080
     acataaaatt ttacagcaaa tcgcattcat cctactgaaa ttctctcatc tcatcctttc      4140
     tacaaaagtc tgtggtacga gtaacacact acacactact tcagcaaaat ttttattcaa      4200
     aaaatcctac aagtcatcgt gcttttcact tgcaaccaag tcatggcacc aaataagaaa      4260
     cttaccgaaa acccggagtg gctcaacgca ttacagcaaa ttttaaggaa tcaagagttg      4320
     gcaatccgtg aaatccgtat aatcgccatg gaaaatcaac aatttttgcg cggcatgcgc      4380
     aataatccaa ttcagtctac caatccgact caaacgcaac gcagttccgg tcaatcatct      4440
     gtaccaggtc agcctttctc agccaatcca tcattttcgg ctagtcaaac gtcgcatccc      4500
     aggcaatcgt cagcaaaaaa tcgccaatca gtcgttcaac gttcagtgca gagaacacgt      4560
     gtttcggtta ggcaagcatc ggtcgccgtt cgtcaagcag ccattccaat caagcgcccg      4620
     acaagaccgt cagcccaacc cggtcgattt tgctggtttc accgacaatt tggtcgagcc      4680
     tcagtgaatt gcctaccacc ttgcgatttt gtcgatcaca tgacacagca gcagtccatg      4740
     cgtaacctgg caacaattca ggtaacacca acatcacatc cgcatcaacc gaccgtaccg      4800
     atcatcgcac cagcattgga agctccggct caacatacgt tttcaccgcc aaaaccgacg      4860
     ccaagcacat cggatcaaaa agcgcctgaa aagtcaaccg ctatggaaat agtcaatgca      4920
     gccacatcca aagtggaatc ccgtttcccg ttggaacgct cttcgaaaag aggaccctct      4980
     ttctcatcat ccgattctgg gcccgagtca ccgagcaaag cacaaaaacc agacgattgg      5040
     aacgcaccgg aggataaaaa cgacgaagaa agttcatcaa gttcatcatc cagctctgaa      5100
     gaagagaacg aagaaaacaa ataaattcta gcctttctcg ctacaaattg tctgcttcaa      5160
     atgaaaaatt ttcaataaat ttttcaattc agcacagata aacacaaagt tttttctttt      5220
     cttctcctca acgcttcttt aaaaggggga atcc                                  5254
//
ID   Gypsy-5_BrCo-LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-223
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1393-1393 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 223 BP; 68 A; 44 C; 32 G; 79 T; 0 other;
     tgtggcagca ctacatctca catcggacgc actcatcatg cgtattaagt ttagttaaag        60
     tttagcaaca ctgcatgtca ttatcagctg acaattggac tttggatatc tattgtctta       120
     ttttgcatgt aaacattacc gtataaaacc aagtgctttt cataaataaa attattcctt       180
     cttgtggatt caagaaacta gtttattcta atatcttccc aca                         223
//
ID   Gypsy-5_BTa-I repbase;    DNA;    INV; 4331 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4331
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 584-584 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(104..1144,1120..4266)
FT                 /product="Gypsy-5_BTa-I_1p"
FT                 /translation="MSIPTLTDEDMQDPAKVKQYLANAEALQVQSSSRCKL
FT                 LEENLNLLRQEMEFIKDAKRKLEEEQNLSTSANKQIMKRKIKLPSFRPEMP
FT                 DLWFIQIEAIFADYGINAEIDKYRTVISQSEGSWLVEINDLIRAGPSVNIP
FT                 YTTLKKEIINRFSLSENSRLKKLLEEEEIGDLKPSQFLRRLKTVAGSTPIA
FT                 DNIMKPLWLSRLPAYVQGILQAQPSNNTLTEIADVADRIAETIPHSVHSTS
FT                 ATNQTNPPPSVHQISKPADPLTDIKEMLTALSHKFDLLDVKVKNLERNIDR
FT                 SRSRSRSKSRSRYSSPKPFKSEKGYCFYHENFGKEARKCHQPCKYLSSTND
FT                 NGSQLNKRQRQPIVAAAGCPTRSNRLFIKDRDSNNSFLIDTGSDLSCFPRR
FT                 LLPGHFKPTNYELKAANESFIKTYGFLPMKLNLGLRRAFSWRFIIADVDVP
FT                 IIGADFLAEYHLLPDCHKMKLVDGVTSLSAQGSQATSNQPSVKEISATNCS
FT                 ILAEFPELTRPPGSPKPDKVPHATRHFIRTTEGPPVSSRPRRLRPKLYRIA
FT                 KAEFEAMLNEGTIKRSESAWSSPLHMAPKKDDEWRPCGDYRALNARTIPDK
FT                 YPIRHLHDFTVNLKGCKVFSKIDLVKAYTQIPVNPADVPKTAITTPFGLFE
FT                 FLYMSFGLRNAGQTFQRFIDEVLQGLDFCFPYLDDILVASKDKKEHKKHLR
FT                 LIFQRLAKYGIIINIKKSIFFADSLEFLGYEVSAQGIRPLPDRIKALMEYP
FT                 PPADAHGLRRFLGMMNFYRLFLPDAAYYQAPLHEALIGIKGNQPIHWTPSL
FT                 LDAFEACKQSLGDATLLAHPSADAPLSIGLFSDASKASIGACLQQLVDNKW
FT                 QPLGFFSKKLNPRQQEWPTPHRELLGVYEAIRHFRPAVEGQDFTIYTDHKP
FT                 LTYVFDKKHGNLPPVQMNQLSFISQFTTDIQYIPGSANVVADAFSRIEAIT
FT                 STNQIDFNTLAAAQKDDPELPELLKDDKLSIKLTLIPVPGTDIKIYCDSTT
FT                 QQRPYVPFPLRQRIFKQLHNLSHPGTRATQKLISDRYVWPKMHIDCRRWTQ
FT                 ACQECQRAKVSRHVHSPLGTINTPSNRFQHIHIDLIGPLPLAQNYKYCLTV
FT                 IDRYTRWPEAQPLEGITAEEVATALLNCWISRFGSPSQLTSDQGRQFESHL
FT                 FRALEKQLGINHIRSTPYHPAANGMVERMHRHLKSAIMCHPNSTWLEALPL
FT                 VLLGMRSVFREDAQATPAELTYGEPLRLPGELLVANPTQDNPAEYVSKLRT
FT                 QMANLRPKPASRHGTANTFIFKDLKTCSHAFLRDDTSRKSLQPPYTGPYKI
FT                 VERTDKVYKLLIKGRQVNISIDRLKPAYILPEEPASVQLAHPKTTPAPAAV
FT                 PPPTPNEAETKAPEYRTRSGRKVHFRFPDLVKQ"
XX
SQ   Sequence 4331 BP; 1297 A; 1376 C; 818 G; 840 T; 0 other;
     gtggtgactc ccgacgttcc gaactacgct ccgactgcgc tcactttcta ttctagtcaa        60
     ccttctactc atcccgtcac acctttagga gtcaatctca atcatgagca tcccaacatt       120
     gaccgatgaa gacatgcaag atccagcaaa ggtaaaacaa tacctggcta atgctgaagc       180
     tctacaagtt cagtcctctt ctcgctgcaa attactcgag gaaaatctaa atctcctccg       240
     ccaagaaatg gaattcatca aggacgctaa acgcaagctg gaagaggaac aaaatctctc       300
     cacctcagcc aacaaacaaa tcatgaagcg aaaaatcaaa ttgccttcat tccgccccga       360
     aatgccggac ctatggttta ttcaaatcga agccattttt gccgattacg gcataaacgc       420
     tgagattgat aaatatcgta ccgttatcag tcaaagcgaa ggatcatggc tggtcgaaat       480
     aaatgattta atccgagctg gacctagtgt aaacattcct tacaccactc tgaagaagga       540
     gataatcaac cgcttctcac taagcgaaaa ttcacgcctc aagaaactac tcgaagagga       600
     ggaaatcggc gatttgaaac catcccaatt cttacgcaga ctcaaaactg tcgcaggcag       660
     cacaccaatt gctgacaaca tcatgaaacc actatggcta agtaggctac ccgcctacgt       720
     gcaaggcatt ttgcaagccc aacccagcaa caacacgctg actgagatag ccgatgtggc       780
     agaccgaatt gcggaaacca tccctcattc cgttcattcc acttccgcca caaatcaaac       840
     caatcctcct ccctcagttc accaaatctc caaacctgct gaccctttaa ccgacatcaa       900
     agaaatgcta acagccctca gtcacaaatt tgacctctta gacgttaaag tcaagaacct       960
     ggagaggaat atcgatagaa gcagaagccg ttcccgctcc aaatctcgct cacgctatag      1020
     ttcacccaag ccgttcaaat ccgagaaagg atattgtttc tatcatgaga atttcggaaa      1080
     agaggctcgc aagtgccatc aaccatgcaa ataccttagc tcaacaaacg acaacggcag      1140
     ccaatagtgg cggctgctgg ctgccccaca cggtccaacc gcctcttcat taaagacaga      1200
     gacagcaaca acagcttcct aatagacaca gggtctgact taagctgttt ccctagacgt      1260
     ctcttaccag gccatttcaa accaacaaac tatgaactaa aagcagcgaa cgaatcattc      1320
     atcaaaacct atgggttcct gcccatgaaa ttaaacctcg gcctacgacg cgctttttcc      1380
     tggcggttca tcatcgccga cgtcgacgtt cccatcattg gcgcggactt tctagctgag      1440
     taccacctac tcccggattg ccacaagatg aagctcgtgg acggggttac ctcactctca      1500
     gcccaaggaa gccaagcaac cagcaaccaa cctagcgtca aagaaatctc ggccaccaac      1560
     tgcagcatcc tcgcagaatt cccagaattg acccgcccgc caggcagccc aaaaccagac      1620
     aaggttcctc acgcaacacg gcacttcatc cgcacaacag agggaccccc agtctcatcc      1680
     cgccctcgcc gcctccgacc caagctatac cgaatcgcta aagctgagtt cgaggcaatg      1740
     ctcaacgaag ggaccatcaa gagatccgaa agcgcctggt cttcacctct tcacatggca      1800
     cccaagaaag atgacgaatg gcgcccttgc ggcgactatc gggcactcaa cgctcgcacc      1860
     atacccgaca aatatcccat tcgccatctc cacgacttta cagtcaacct caaaggctgt      1920
     aaggtcttct caaaaataga tctggtcaaa gcatacaccc agatccccgt caacccagca      1980
     gacgtaccca aaacagccat caccactcct tttggactat tcgaattcct ctacatgagt      2040
     ttcggactgc gcaacgcagg acaaactttt caacggttca tcgacgaagt cctacaaggc      2100
     ctagacttct gcttcccgta tctagacgac atcctggtcg cctcaaaaga caagaaggaa      2160
     cacaagaagc atctacgcct aatttttcag agattagcaa aatacggcat catcatcaac      2220
     atcaagaaga gcatcttttt cgccgactcc cttgagttcc tcggttacga agtatccgcc      2280
     caaggcatca gaccactccc agaccgcata aaagcactga tggaataccc acctccagca      2340
     gatgcacacg gtctacgaag attcctgggc atgatgaact tttaccgcct tttcctgcca      2400
     gatgctgcct actatcaagc acccctacac gaagcactca ttggcataaa agggaatcaa      2460
     ccgattcact ggacaccttc ccttctggac gcctttgaag cctgcaaaca gagcctcgga      2520
     gatgccacac tcctcgcgca cccaagcgcc gacgcacccc taagcatagg cctcttctca      2580
     gacgcttcga aagcatcgat tggagcctgt ctacagcaac tcgtcgacaa caagtggcaa      2640
     cctctcggct tcttctcgaa aaagctcaat ccacggcaac aggaatggcc cacgccgcac      2700
     agagaactcc tgggcgtgta cgaagcaatc cgccatttca gaccggcagt tgaaggtcag      2760
     gacttcacga tctacacaga tcataagcca ctaacctacg tcttcgacaa gaaacatgga      2820
     aacctgccgc ccgtccaaat gaaccaactt tcattcatat cccagttcac aacggacatt      2880
     cagtacatac caggctccgc caacgtcgtc gctgacgcat tctccagaat cgaagcgatc      2940
     acttccacaa accagatcga cttcaacaca cttgccgcag cacagaaaga cgacccagag      3000
     ctaccagaac tcttgaagga cgacaaactt tcaatcaaac tcacgctcat tcccgtccca      3060
     ggaacagaca tcaaaatcta ctgcgactct acaacgcagc aaagacccta tgtcccattt      3120
     ccactcagac aaaggatctt caagcaactt cacaacctga gccaccccgg caccagagca      3180
     acacagaaac tcatctccga tcgctacgtc tggccaaaaa tgcatattga ctgtcggaga      3240
     tggacccaag cctgtcaaga gtgtcaacga gccaaagtct cccggcacgt acactcacct      3300
     ctaggcacca tcaacactcc atccaaccga ttccagcaca tccacatcga cttgatcgga      3360
     cctcttcctc tggcgcaaaa ctacaagtat tgcctcacgg tcatcgaccg ctacacccgc      3420
     tggccagaag cacaacctct agagggtatc acagctgaag aagtcgcaac agccctccta      3480
     aactgctgga tttcaagatt cggttcacct tcccagctta ccagtgatca aggccgacaa      3540
     tttgaatctc atctcttccg agccttggag aaacagctag gaatcaacca catccggtca      3600
     actccatacc accccgcagc aaacggaatg gttgaacgga tgcacagaca cctcaagagc      3660
     gccatcatgt gccacccaaa ctccacatgg ctagaagctc tcccactagt acttctaggc      3720
     atgagatctg tctttagaga agacgcccaa gcaacacccg cagagctgac ttacggcgaa      3780
     cctctacgcc tcccagggga actactggtc gcaaacccaa ctcaagacaa ccccgcagaa      3840
     tacgtcagca aactgcgcac ccagatggca aatcttcggc ccaaacctgc ctctcgccac      3900
     ggcacagcaa acacgttcat attcaaggac ctgaagacat gctcccacgc cttcctcaga      3960
     gacgacacaa gccgcaagtc cctgcagccc ccctacactg ggccatacaa aatcgtagag      4020
     cgtaccgaca aagtatacaa acttctgata aaaggcaggc aagtcaacat cagcatcgac      4080
     cgccttaaac cggcctacat cctacccgaa gaaccagcct ctgtacagct cgcacatccc      4140
     aaaaccactc cggccccagc tgcggtcccg cccccaacac ccaacgaagc ggagaccaaa      4200
     gccccggaat acaggactcg atcagggagg aaagtgcact tccgcttccc ggacttggtc      4260
     aaacaataaa gaaagctcac accaaaattc accaacttct tagagactcc gtctcagccg      4320
     taggggagta c                                                           4331
//
ID   Gypsy-5_BTa-LTR repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-256
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 610-610 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 256 BP; 48 A; 107 C; 56 G; 45 T; 0 other;
     tgtggcggcc aatcaccgcc tctccagcgc ggcgcatccc gcgctcgccc gtgattggcc        60
     gacacggtcg caccccgagg gtataagacc agcgcccccg gccacctacg gcactcgtgc       120
     tcagtcctca agtcagtcaa gtcccgacca gccacgctgc tccagtcttc gctcgctcca       180
     gacgccatcc atcctgtctc tcatcaccat ctaaaacggc ccttttcagg gccaccacat       240
     cacttgagca cccaca                                                       256
//
ID   Gypsy-5_CFl-LTR repbase;    DNA;    INV; 2815 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2815
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1017-1017 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2815 BP; 780 A; 772 C; 455 G; 803 T; 5 other;
     tgttacgtcc ggtggacttc acgattcttt tctttcatcg aaacgctatc ttagaagtaa        60
     ttaaagatag gctcgaattt gaaataagga aacggaacct aactcgcgta aataaatagt       120
     tagcctaaac actgagagtg gccagtcgag atagcgctaa ggaaaatcta aataaacttt       180
     tgaattatga gactcggaag tataagaaat tcgaaccacc cgtatctatg gttataactt       240
     ggttcatctt agagatttta aacaaagagc ctgtggtcct cgagaaattg accaaaggta       300
     aacataaaac aaacctctga aattaatact gcacgtgcgc tcgttcgaca ggccattctc       360
     aatcgtcaaa tcgttaagcg ataagataat cagctcctcg ctcccactct ctactggatg       420
     gagctaaatc tcgagcaaaa gggcttaacc aattagaacc ttaagacact cctctcttac       480
     tgaaaatcta actccttggt cctaagaagg gagtaataga aatcatttga ttcgattwaa       540
     aaagattccc accatccaga agggaggagg agcaaaaact ttaaaattca cgagccgaaa       600
     gcgcggacac acagttagtc tcaggatttt tccgcttgct cttctccgcg cacagttagt       660
     tctcaagact tttccgcctg ctagtccttt gctccgaatt tctttacgca atatttaaaa       720
     aaaaaaaatc aaaataggaa tctgaaagtt tgaagtgagt gtgatccctg ggctcctcca       780
     gacgttgcag ttcacgatca accacttgtt ggcctgccaa ctcacgctcc ggcctgaacc       840
     agaacttttc atttgtcgac gcactcaata attagtaagt ctcatctgat tatactccct       900
     ttaaccttcc acgattaagt tgtcattggg aaagatatct ttgtttttat ttttacctaa       960
     atcaacaata aaaataatta tcttcatttc atcttcattt catcaaatca accatttaaa      1020
     tcttgttctc tggctcattc cttttcctta atccacctct acacaattcc ctgttcgtcg      1080
     agaatctccg caaggcggtt cacgaacaat tccctgttcg tcgagaatct ccgcaaggcg      1140
     gttcacgaac aactcctcgt tcacctagaa tctctataac acagttcaca agcaattcct      1200
     aatcttaatt aaatcttcga gagccgattc ctctttcgac tcctttaaaa ttccaactat      1260
     ttttgaaccc attttcgaac tatgttattt cttttatttt ctatatgtta atactctctt      1320
     aactatacaa tctaattaaa agtagaagta aattttttcg ggactaatta ttattttgtc      1380
     taaccttgaa taatcttctc ccaatgacaa tagagataga attaggaagg gttatatttg      1440
     cgaattcata aattacttga ccgtgaaatt atcattagtg cctcacggta aacgccgggc      1500
     tgcattgcgg tggcggaatc gccggaacaa gcgctctagg ggggaacagc ctcaacccac      1560
     gccggaattc ccccatcacg atagatcgaa tagtattagt aacctctcgc ccattgacaa      1620
     cacacaccgt gacactaaca cacattcact cagcaaaacc ccctcgatcc ctgcacctag      1680
     ttactcccct atctcctccc cagcgccttc cccctccttc cccggcacac ctgtcccgag      1740
     cccaccacca ttctccgcgt cacctcagcg atctcctacc ccgattttac ccgaaccttc      1800
     tccctcccct tctccctcac ctttattcga gtcgcgatct ccgtctccca tacctgtaat      1860
     taccctcgac tccgatcctc catccccttc caccccctcg gagtcctcag agttcctcga      1920
     ggatccggag gatttcgcaa gatatcctcc cgaccttgac gagagctccc atccctttga      1980
     ctttccctca gagtccccgt cggaacatcc tctccctaat ccgacacctg aaccttccca      2040
     tcatgaccaa ctaagctact ttatatccca gtttcccctc ctcgatttcc ccattccaga      2100
     aggatctttc tgcgtgggtc ccggtgatgt ggaccacgaa gaattccttc attatttaac      2160
     tactgcccct cctgactcga taattccttg gtacctccct ggattacacc taccgctmgc      2220
     cgttcccatc caagccctgt taaggaaatt ccctccgtcc accatccagt tcgatgaccc      2280
     ttgaccttta ttccctcctt aatctattct ttcagatcct ttscttacag attaaataag      2340
     aaatctaaat ttagcaaaaa ttgtaaaatc cagccaggat ttagctacct taaaactcct      2400
     tttawttatt cctggctgat gtcctccgta ctattgtaac acccgcgaaa ttacacattc      2460
     acaacacaca ataaaaacat tttttttgta aacgcgttat gatctgaata aattttgatt      2520
     tatggtgaag gataaattta tttacatttt cccgttcact tccattcatt tccgaaatcg      2580
     cacaaggtcc cgtcccgtgt aaaagagatt cgattctctc accaaaaagg gacmaacgag      2640
     cgtaacggcc taagacactc acggagttaa agggaccatt ctggtcactg acctgtgtca      2700
     ggccccagga cagtgcgctc gacccgatcc atacacacgc ccgaaaagtg tgtcaccggg      2760
     taagtaggtt gcgttcttcc agatggcccg acctctcaag ggtctggacg taaca           2815
//
ID   Gypsy-5_CoFl-I repbase;    DNA;    INV; 11663 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-11663
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2273-2273 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           956..3178
FT                 /product="Gypsy-5_CoFl-I_1p"
FT                 /translation="MIHFSDMTHESESDNEGLGDNMITEMSRPGPSKKQQR
FT                 ESMTEQMLELELEPEGCEKLDALDEKTKAIVMGLFSKIRAKLKKAEEVNVP
FT                 HKVVTETIRNSPPTGRDHRDISGDTDINIGRMNKEAGLLSGGRVSERNARR
FT                 AEEICGARTDKTNMLLTQWGMPGKPEWPTSVASCYEYKGSRNPGVGDVHNL
FT                 QLWDRIKDMREELEKMKEAAFRVTVPPLTDNYTNWADSDTNRDRLRSDIAP
FT                 TAPQCTEDTHATHNHNHPRRPQNAQLNILPTLSHMASNIPFFDGDPINLPL
FT                 FERMVRMTAERVGPENELFFLGTLASRLKGKAAEHFAPRLAQFATVQEFLR
FT                 ELARRYGSINNSDTLMAQLKIIRQQNRESIEDYGGRVQGLYNRLTMLHDSN
FT                 PSLLPIQKQVLKESAEAEAVKQFTYGLHPTYRCKITCLNPRTLCEAIIEAL
FT                 KIESDLSLRHAIPVRTLPAHNKATTEWGPTVNLANIGERTTETTNGAQGAA
FT                 AAANVKRCIYCDGQTGHSVEECRKLLAVINDRKTLRDNGREPKGNCNYCQR
FT                 PGHYARDCRSRKQDREEEERQRNEGHNQPVDNTNTNRNAYNYGNGNDNATI
FT                 IMIIIITGAITMAQRSLITGIITTTTGTTTTITETTITILEITETAITTIE
FT                 IPIIMIGMITITGTITTIPRAVIITPTAATVTRIITTTGKHSTVMETTIRI
FT                 KTAGTAITGTQLGTGHHRMGAHSSEKTAHTVLTIGETHPQL"
FT   CDS           3159..9182
FT                 /product="Gypsy-5_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="ERRTRSFKLARCSACSSNVEHELEKETERSVSGEREG
FT                 ARERPQEAEQKIVEAESRINSPSTYAVQGSIECNTAECEDTPTQQGGRRTR
FT                 KGRRARRKSNRIKAPDTYIENDEPKLSECDEEIEQLPKITIKLSGTGHMPP
FT                 SVQLRGPQLKNGKATFYADTGAEISIIKENFLSTDMLIDSRYRVAIIGVTH
FT                 GARKTLGTVQAQLHGLECTLHVVPHDFPIDAEGIIGWDTFKRYRGQISAAE
FT                 NMIRLDDVEIPLLKPECFKIPAKSRQIIYARIIKSRNEAEYGWIPLQEMEK
FT                 GILFGNFIARNINGKIVAECINMSXEIKYVPVPEVELLDYEEIYRDHXKDV
FT                 EGDNVESLGEAVIRLFNEGKNYDKEKTENFSKNEEELEKQKRVDKIMQLVD
FT                 TAGCNDEEIEHVRRLIESNPYVFGLDGEPLKATHLLKHRIITTSDKPIVAK
FT                 RFRYPPAIRDQMKIEIKKMLEQGIIEPSTSPYSSNTWIVAKQPGPNNEKRV
FT                 RVVTDFRLLNEVTVGSCYPLPFQSDILENLASARYITVVDLKSGFFQVEIH
FT                 EDDAHKTAFSGPDGHYQYKRMPMGCKDSPNTFLRAIALALAGLQGHEIEVY
FT                 LDDIMVFAPDLEEHERRFTKLLKRLAAANLTIEPKKCQFLKKEAKVLGHIV
FT                 GNGQIMTDPKKLEAARNYPRPTNVKKVKQFLGFVGYYRRFVKNYAQIAQPI
FT                 SSLLKAGTAFKWGDQEEKAFKTLVDTLCSGPVLIAPDLEKPFIVTTDASDY
FT                 AIGAILSQGEIGKDRPCEYASRCLKGSELRYPTYDKELLAIVFAKEQFRPY
FT                 LYGRKFTVVTDHEPLKHFHSSKKPDIRFNRLKAELRGYEFEVVYRPGVNNR
FT                 PPDALSRNPVLQEGEVNPERPRQELYQLADEQENEEPADSDGPPARIFKVR
FT                 ATRKKRIQGNPKKIKIHGTDSENSNVITRKKXRYRGENSEKGSDMSTEGQE
FT                 NGDADSESEEPXEKNSPPPQAIKDRNEWEAREVADKGGLISQGPADGKLGY
FT                 IKKEPGFRKGITTTSTPAILKQKEKLRKARKRQLDTLHRHKPRFSATQLTT
FT                 NPSKEIIIANCDTPLPSVANKNQELITEEQRTDIGEKEGSTKQAKEFSTDK
FT                 QEEPNIHDLLEGRSDELRALVMIDIKKQDVEGRPGMRIDMWEPSEIVTTDK
FT                 AALRTRDEVNENTHNGGSMAQSEKNENTVRNERDEQLEKVAPPDKWLEYLK
FT                 DETRRETCECTQPGSTLTKISEIPSDPPGNCLFHSLIWLYELDISTTELRT
FT                 ILRNSNLLQKCREPEETKEILESQTMYGNSDCTYLFSQEFKKNICVHFALT
FT                 NGNYIYTHYIATTDGEFGHLHLEGVGENAHYTPLIQVSSAINTELESGVET
FT                 PQRDRSSSEGSEKRKHRSELDKRVDRGKRGKEDKSHSEKEQDTSESAADTS
FT                 KHTEKRGENRQQTSSDDDSNESTAEEEGEQANELNDALCETESENEANTVI
FT                 HSPSMEKYRVCRTRLPTARPPWAPKEGEDPPLLQKLNRIEGHPFKYLDNLA
FT                 FMTITEAVPNTEVIDALHERGYINPTRMNNEERSVGETKIINARRIKIMHM
FT                 YVKQHFEETALKSNIKKCIKALKEVVVANEIKTIGIVRDLAILNLTQWGYF
FT                 VDTFEEIFKDIRLAAVLYTNTLVIPPADQRFKIIREYHEAAIGGHRGMNKT
FT                 YNRIAKDYYWRNMRPDVRQVILGCTSCQTKKLVRIKTKQAMLITDTPSRPF
FT                 EKISIDFYGPISKPSANQYTHILSIQDWLTKFIVLAPVKRATAEETVRAIT
FT                 DKFIAYFGPPEHLLSDQGTHFMNKSMDELARLFKIDKMGSTAFHPQTNGAI
FT                 ERMHHTLTEYIKAYVEQNDHWDEHLPMCMHSYNTTDHQSTGYSPHELVFGQ
FT                 RARTPSSIKLPPKGQTSDEYFKELVETLTEMRTIAAMNQVQAKYRSKYYYD
FT                 RQLNTRYFLEGEMVYVLKEPSKGKYDSQYEGPYEITGIDYINKNVKLQRGD
FT                 EIRVSHVDKIKKACMVKAPPENANRVRDTKRQT"
XX
SQ   Sequence 11663 BP; 4292 A; 2335 C; 2648 G; 2382 T; 6 other;
     gttttggtgc taagtgtggg gtctggtaag agtcggaatt tttttttctc tttcattgca        60
     cgcgtttcaa aaaaaaaaat tccgccgaga agcacacata gtgcagtgcc gcgagaatac       120
     gacgattgaa aatcgggaag ccgaggagcc gatcaaagac gacagttccg gtcatattcg       180
     acaagcagcg gtgacagcag cctggaagcc aacaggacca ggataccaat tgcagataat       240
     cccaggatca aggaaacaag cggcgagcgc tgaagggaaa tggtcgccaa aattttattc       300
     ttattggcgt gcatatctac gagcacgtaa gtacatttat aataaaatta attttatccc       360
     ttacccccga ggcaagatag ggaaggcact cactaggtga agattaggtc gtgggaaatt       420
     tttattattg atatatatat attatctcgt tcgctctttt ttttagtgtt ttctctaaaa       480
     aaaaaaaaaa acccgaaaca aaaatcacgc gaaataacag acttaaataa gcagtggact       540
     aggaaaattt ttgcacaacg aacgtgaatc agagagattt tattagtagg cttggtaaga       600
     cacaggaaac atccggaaat tactactcac atccatatcg gctgaaaaat ttattatcat       660
     ttttttttaa cgacaataga cgacagattt tccaaaaatt tttttttcct catttaccac       720
     taaacgagaa tacagggtaa aatcaaagaa actaagtgag agacgaatac cactcttgta       780
     ctctcttacc tcgccctcta catctttttt ttcttctcgt ccgattatta ttaagctgcg       840
     acataggtaa ttgaacgcag ccccgcaatt gtaggagagt acataagatc tagtataata       900
     aaaaaagaag atacgactca cgatatatat attaaaaaaa aagtaggaaa gaaaaatgat       960
     tcatttcagt gatatgaccc atgagtcgga aagcgataac gaaggcctgg gtgataatat      1020
     gataaccgaa atgagcaggc cagggcccag taaaaagcag caaagagaaa gtatgacaga      1080
     acaaatgtta gaattagagc tcgaaccaga ggggtgtgaa aaactagatg ccctagacga      1140
     aaagactaaa gcaatagtga tgggcttatt ttcaaaaatc agagcgaagc taaagaaagc      1200
     agaggaggtg aatgtccctc ataaggtggt cacagagacc attcgaaatt cgccaccgac      1260
     aggtagggat cacagggata tatctggtga cacagacata aacataggac gcatgaacaa      1320
     agaagcgggt cttctttctg gcggacgagt cagcgagcga aatgcgagga gagctgaaga      1380
     gatatgcgga gctcgaacag acaaaacaaa catgctgctg acgcaatggg gcatgccagg      1440
     gaaaccggag tggccgactt ccgttgcatc ctgttacgaa tataaaggtt caagaaaccc      1500
     cggggtagga gacgtacata atctacagct atgggacaga ataaaagata tgagagagga      1560
     actggaaaaa atgaaagaag ccgcgtttag ggtaacggta ccaccactaa ctgataacta      1620
     cacaaattgg gccgactcgg atacgaatag ggatagacta cggagtgata tagcacctac      1680
     cgcgccccaa tgtacagaag atacacacgc tacacacaat cataatcacc cacgcagacc      1740
     gcagaacgcg caactaaaca ttctgcccac gctcagtcat atggcaagca acattccgtt      1800
     ctttgatgga gacccaatca acctgccact attcgaaagg atggtaagga tgactgcgga      1860
     aagggtgggc ccagaaaatg aattattttt tctcggcaca cttgcgagca gactaaaggg      1920
     aaaagcggct gaacatttcg cgcccagact ggctcaattc gcgacagttc aggaatttct      1980
     tcgggaactt gcgaggagat atggtagcat aaataattcg gacacgctga tggcacagct      2040
     aaagataatt agacagcaaa accgggaatc gatagaggac tacggcggaa gagtacaagg      2100
     actgtataat aggctgacga tgctgcatga ttctaaccca agcctactcc ctattcagaa      2160
     gcaggttctg aaagaaagcg cagaggcaga ggcagtaaag caatttacat atggcctgca      2220
     cccaacatat agatgtaaga ttacatgttt aaacccaagg accctctgcg aagcaattat      2280
     agaggcgctg aaaatagaga gcgaccttag cttacggcat gcgataccag tacgtacact      2340
     gcccgcacac aataaagcaa caaccgagtg ggggccaaca gtaaatctgg caaatatagg      2400
     agaaagaaca acagaaacca ccaatggggc acaaggagca gcagcagcag caaacgtaaa      2460
     acgctgtata tactgcgacg gccaaaccgg gcattcagtc gaggaatgcc gaaaactgct      2520
     agcggtgata aacgacagaa aaacgctaag agataacggg agagaaccaa agggaaactg      2580
     caattattgt cagagaccgg gacactatgc gagagactgc cgctcacgta agcaggacag      2640
     ggaggaggag gagagacagc gaaacgaggg gcataaccaa cccgtagata ataccaatac      2700
     caacagaaac gcctataatt acgggaatgg aaatgataat gctacaatta taatgataat      2760
     aattataaca ggggctataa caatggccca acggagcctt ataacaggaa taataactac      2820
     tacaacagga acaacaacta caataacaga aacaacaatt acaatactgg aaataacgga      2880
     aacagcaatt acaacaatag aaataccaat tataatgata ggaatgatta caataacagg      2940
     tacaataact acaatcccac gggcagtaat tattactcca accgcggcta cggtgacccg      3000
     tataataaca acaacgggga aacattcaac cgttatggaa acaacaataa gaatcaagac      3060
     agcaggaacg gctataacag ggacccagtt aggaacgggc caccacagga tgggggccca      3120
     cagcagcgag aaaacggcgc atacggtcct gacaatagga gagacgcacc cgcagcttta      3180
     aactcgcaag atgttcggcg tgctcctcaa acgtcgaaca tgaattagag aaagaaacgg      3240
     agagaagcgt gtccggcgag agagaaggtg cgagagagag gccgcaagag gcggagcaaa      3300
     aaatagtgga ggcagaatcg cgcatcaaca gcccgagtac ttacgcagtg cagggaagta      3360
     tagaatgcaa tactgcagag tgcgaagaca ctcctacaca acaggggggc agacgcacga      3420
     ggaaaggcag gagggcccgc agaaagagta atcggataaa ggcgccggac acatatatag      3480
     agaatgacga acccaagctt tcagagtgtg acgaagaaat agagcagctt cccaaaataa      3540
     ctataaaact ttcgggaaca gggcatatgc caccatcggt ccagttacgg ggaccacaat      3600
     taaagaatgg aaaggcgact ttttatgcgg atacaggcgc agagatttcg attataaagg      3660
     aaaattttct tagcacagac atgctaatag acagtaggta tcgagtggct attatcggcg      3720
     tgactcacgg agcacgcaaa acactgggca cagtacaggc tcagttgcac ggattggagt      3780
     gcacattaca tgtcgtcccc catgacttcc ctattgacgc ggaaggaatc atagggtggg      3840
     atacttttaa gcgatatcgg ggccagataa gcgccgccga gaatatgatt agattagatg      3900
     atgtagagat accactgtta aagccggagt gttttaaaat acctgcaaaa tcgagacaaa      3960
     taatttatgc gcgaataata aaaagcagga atgaagcaga atatggctgg atacccctcc      4020
     aagagatgga gaaaggaata ttatttggga actttatagc cagaaatatt aacgggaaaa      4080
     tagtcgcaga atgcattaat atgagtgang agataaaata cgtgcctgtt ccggaagtag      4140
     agctgctaga ttacgaagaa atttaccggg atcacwcaaa agacgttgaa ggggacaatg      4200
     tcgaaagctt gggggaagca gtgataaggt tatttaatga gggaaaaaat tatgataaag      4260
     aaaaaacgga aaatttttcg aaaaacgaag aggagttaga gaaacaaaaa cgggtggaca      4320
     agataatgca acttgtagac acagccggtt gcaacgatga agaaatagaa catgtgagaa      4380
     gactgatcga gtcaaaccct tacgtatttg gccttgatgg agaacctctc aaggcaacac      4440
     acctattaaa acatcgaatt ataacgacgt cggataaacc catcgtggcg aaaagattta      4500
     gatatccacc ggcgataagg gatcagatga aaatcgaaat aaagaaaatg cttgaacaag      4560
     ggataattga accctccacc tcgccatata gctcgaacac ctggatagtg gcaaaacaac      4620
     cggggccaaa caatgaaaaa agggtgagag tagtcacgga ttttcgacta ctaaacgaag      4680
     ttacggtagg ctcatgttac ccactaccgt ttcagagtga tatcttagag aacctagcgt      4740
     cggcacgtta catcacggta gtggatctca aatcgggatt tttccaggtg gaaatacacg      4800
     aagacgatgc acataagaca gcattttcag gcccagacgg gcactaccaa tacaagagaa      4860
     tgccaatggg gtgcaaagac tcgccaaaca catttctaag ggctattgca ctagcactcg      4920
     caggattaca aggccatgaa atagaagtgt atcttgatga cataatggtc tttgcccctg      4980
     accttgagga acatgagaga cgattcacga aactgttaaa acggctggca gctgcaaacc      5040
     tnacgattga acctaaaaag tgtcaattct tgaaaaaaga agcgaaagtg ctcggtcaca      5100
     ttgtaggcaa tggacaaata atgactgacc ccaagaaact tgaagcggct agaaattatc      5160
     ctcgaccgac aaacgtaaag aaagtaaaac aatttttagg attcgtaggc tactacaggc      5220
     gatttgtcaa aaattatgca caaattgccc agcctatatc gagtctccta aaagcaggca      5280
     ctgcatttaa atggggtgac caagaggaga aggcatttaa aactctcgta gatacactgt      5340
     gcagtggacc tgtactcatc gccccagatt tggaaaaacc ctttatcgtc acgacggacg      5400
     catcagatta cgcgatcgga gcgattctta gtcagggaga gatcggaaaa gatagaccgt      5460
     gcgagtacgc gtctcgctgc cttaaaggga gcgaactccg ctacccgaca tacgacaagg      5520
     aattgttggc gattgtattt gcaaaagagc aatttagacc atatttatac ggacgcaagt      5580
     ttacggtggt tacagaccac gagccactta agcactttca ttcgtctaaa aaacctgaca      5640
     ttcgctttaa caggcttaaa gcggaactga gagggtatga gttcgaagtt gtataccgcc      5700
     cgggcgtaaa caacagacca cctgacgcat tatcacgaaa cccagtacta caagaggggg      5760
     aagtgaatcc cgaacggcct cgccaagagc tatatcagct ggcggacgaa caagagaatg      5820
     aagaaccggc tgatagcgac ggaccaccgg cgcgcatatt taaagtacgg gcaactcgta      5880
     agaaaagaat tcaaggtaat ccgaagaaaa taaaaatcca tggcaccgac tcagaaaact      5940
     cgaacgttat aacacgaaaa aagamacgat atcgcggtga gaatagtgaa aaaggttcag      6000
     atatgagtac agaaggtcaa gaaaacggcg atgcggactc tgaatcagag gagcctwacg      6060
     aaaagaattc gccgccgccg caagcaataa aggatcgaaa cgagtgggaa gcgcgagaag      6120
     ttgcagataa aggaggactt atttcacagg ggccagcaga cggaaaatta ggctacatta      6180
     agaaagagcc aggctttcga aaggggataa ctactacaag cacgccagca atattaaaac      6240
     aaaaagaaaa attacggaaa gcacgtaaac gacaacttga cactttgcac agacacaaac      6300
     cacgtttttc agccacgcaa ctgacgacga acccgtcaaa agaaataata atagcgaatt      6360
     gtgacacacc attacctagc gttgcaaata aaaatcaaga gttaattaca gaagagcaaa      6420
     gaactgatat aggagaaaaa gaaggaagca cgaaacaagc gaaggaattt tcaacagaca      6480
     aacaagaaga gccgaatata catgacttat tggagggaag gtctgatgaa ttgcgggctc      6540
     tagttatgat cgacattaaa aagcaagatg tagaaggcag accaggaatg aggatagata      6600
     tgtgggagcc tagcgagata gtaacgacag acaaagcagc gctacgcaca agagacgaag      6660
     taaacgaaaa cacacataac ggggggagta tggctcagtc agagaaaaat gagaacacgg      6720
     tacgaaacga acgcgatgag cagctagaaa aagttgcacc cccagataaa tggctagaat      6780
     atttaaaaga cgaaacgcga agggaaactt gtgaatgcac acaacctggt agtactctga      6840
     caaaaatatc ggaaatacca tccgacccac ccggaaactg tttgtttcac agccttatat      6900
     ggttgtacga actcgatatc tcaactactg agttacgaac gattctgcgc aattctaatt      6960
     tattacaaaa atgcagagag ccggaagaaa caaaggaaat tttggagtca caaacaatgt      7020
     atgggaacag cgattgtact tatctgttct ctcaagaatt taagaaaaat atttgtgtac      7080
     attttgcatt aaccaatgga aattatattt acactcatta cattgctacg acagacggtg      7140
     aatttggcca tttacatcta gaaggcgtag gtgaaaatgc acattatacg cctcttatac      7200
     aagtttctag cgcgataaat acagaacttg agtcaggggt agagacccca caaagagacc      7260
     gtagcagtag tgaaggaagt gagaagcgta agcataggtc cgaactagac aagagagtgg      7320
     acagaggcaa gcgagggaag gaggacaaaa gtcattcaga aaaggagcaa gacacttccg      7380
     aaagtgcagc ggatacaagt aagcatacgg aaaaacgggg agagaacaga cagcaaacaa      7440
     gcagcgacga tgacagcaat gaaagtacag cagaggaaga aggagagcaa gccaacgagt      7500
     tgaatgacgc gctatgcgaa acagagagcg agaacgaagc caacacagtc atacactcac      7560
     catcgatgga aaaatataga gtgtgcagaa cacgcctacc aacggcaagg ccaccatggg      7620
     caccaaaaga gggggaagac ccacccctac tacaaaaact gaacaggatc gagggccacc      7680
     catttaagta cttagacaat ctagcgttta tgacgataac agaagcagta cccaacacag      7740
     aggtcataga tgcgctgcac gagaggggat acattaatcc gacacgcatg aataacgaag      7800
     aaagaagcgt aggagaaact aaaataataa atgcaaggag aataaaaatt atgcacatgt      7860
     atgtaaagca gcactttgaa gaaacggcgc ttaaatcaaa cattaaaaaa tgtattaagg      7920
     cccttaaaga ggtagtagta gcaaacgaaa taaaaacgat tggwattgtt agggacctag      7980
     cgatcctcaa tctaacccag tggggatact ttgtcgatac ctttgaggaa atattcaaag      8040
     atattagact agcagcagta ctctacacga acactctagt aatcccacca gcagatcaaa      8100
     gatttaaaat catcagagaa taccacgaag cggcaatagg tggacatagg ggaatgaata      8160
     agacatataa caggatcgcc aaagactact actggagaaa catgcgccca gatgtgagac      8220
     aagtcatcct gggatgcaca tcatgccaaa cgaaaaaact cgtccgaatt aaaacaaaac      8280
     aagccatgct catcaccgac acaccgagta gaccgttcga aaaaatttct atagacttct      8340
     acgggcccat cagtaaaccc tcagcaaatc agtatacaca tattttatct atacaagact      8400
     ggctaacaaa atttatagtt ctcgcacctg tgaagagagc aacagccgaa gaaacggtaa      8460
     gagcgataac agataagttt atagcgtact ttgggccgcc ggaacattta ttatcggacc      8520
     aaggcactca ttttatgaac aaaagtatgg atgaacttgc aaggctgttt aaaatagaca      8580
     aaatgggcag cacagcattc cacccacaaa caaacggcgc catcgaacgt atgcatcata      8640
     ctctcacgga gtacatcaag gcctatgtag aacaaaatga tcactgggac gaacatttac      8700
     ctatgtgcat gcactcatac aataccacgg accatcagag tacgggatac tcaccgcacg      8760
     aattagtttt cggacaaaga gctagaacac catctagtat caaactgcca cctaagggcc      8820
     aaacttcgga tgaatatttc aaagagttag ttgagaccct gacagaaatg agaaccatcg      8880
     cagcaatgaa ccaagttcag gcgaaatacc gatcaaagta ttactatgac cgccaactga      8940
     atacaagata tttcttagag ggagaaatgg tttatgtgct gaaagagcca tcaaagggca      9000
     aatatgattc gcaatacgag ggcccgtatg aaataacagg cattgattat atcaacaaaa      9060
     acgtaaaact acagagaggt gacgaaataa gagtatccca cgtagataaa atcaaaaaag      9120
     catgtatggt aaaggcaccg ccagagaatg cgaacagggt aagggacacg aagagacaga      9180
     cttgaacatt cgacttcact taaaattttc gcggcccccg gacgcagcgc gaaaatataa      9240
     cagaaaggag ggatcaatta ggtttacgat aaaatttttc gcggcccccg gacgcgccgc      9300
     gaactacata tatacatata ttagactcag atacgcaagc tcacagaaaa aaaatataat      9360
     ggggaggtac gcatgaacaa agcattaata acatcaatca atagtagaat ttgcattaca      9420
     tgaattgaaa aaaaaacaaa gcgaatgagg ggcgcgtgtg gcactctcta atgaggagac      9480
     atactccaat aagcgtagaa ttaattcata ggacaaatgt acatattata gatggtacaa      9540
     cagaaaaaat tatgtatacg tataggctga gataaacatg taaatttaaa tgaatatatg      9600
     cgagaggtac ggaaaaaaat taatgttaaa ttagcaaacg aaaaagtatg aacaaataac      9660
     aatttctttt tgtagcccat tgacatcatt gttgtataag aaaaacttat tttagcaatt      9720
     attgttaggt agagaggagc atggaggaat gaaagtaaaa taaattaagc aatcgcagga      9780
     aaaaatttat tctttaacag gcccacgagc tcacgtcaag tacgagaggt tgaacctcct      9840
     tttcttcccc ccttccgtca ttctccacca gtaacaatcc tactcctttc gtcatgatcc      9900
     gctgacaatc agaacgcctg aaacgacaca cacagtcgtc atgaagtatc gaatcgactg      9960
     ccacgtccaa ggcaacgaac agactgttcg tcaaaccgtc cacctcaaag tcagcataat     10020
     tttgcaaaaa ctacatggac cagtacttaa tcgttcatgt aagggagact aaaaataatg     10080
     cacccagatc accgctcgac tatcgagagg aataatcgac cacacccagt gtgcggcagt     10140
     gtttctgaga acttggccat cgaaggacaa cgttaccagg ccaccctcat tcaaacaggg     10200
     tcgtcgatac tgaagagaag gcatacgaat ctacaacccg catgcttaac tgaaagaaat     10260
     aaaagacgct tgcaatcaca taagctgtta cttacataac gacattgcgc aacagtgtac     10320
     gcgagctgct cctgcttttg caggaaggga aaaaataaaa ttgcatccat aaggaccaca     10380
     cacggagatt ctactggcgc aaaaagaaaa aaatcatgtt gtgacacgag tagagttgaa     10440
     gctcagcttt gagaactcag tcagccgcgc aatcatctta gaaagtacac tttctctaga     10500
     cattatagag gaaaaataga agctttgttg ttgtaagaaa aatagcgaaa aagcagcgaa     10560
     caaatcagca aatacgtcta cggcgtcgag agtggaagtc gacgaaaaaa atatccttat     10620
     aattccttcc ctaaactgac cccataagaa aagagagagg aagagtatga ggtaaacatt     10680
     atataagaaa atgtatggat gaaaaatact agaaaaatgt acgatacagg tcaaaactta     10740
     aatgcggaat acaccgccat aaaatgattt ttttttattc atacctccaa gcttgtctcg     10800
     accaaaaaaa atacaagtga aatgtaaggc aaccaatcgt caaactatct gactctacag     10860
     tgttcttgaa tatgttatat gaccccacag gcaaaatggg gcgcataata tcataaccga     10920
     ctattcacaa actcaataag cgactcatat gcgcacgtag agccgatgcg aaataaggga     10980
     taacgtaatg aaacatattt acgattgaga attttttaac taagggaaaa atacccacat     11040
     tgacaaaaac actaaaataa attacaataa ttatacaaaa aaagtaaaga aagagaatta     11100
     aaagatatac gttcattatt atatactcta aatgtaaggg gagagccaca ctcgaagctc     11160
     aacgctgata aaaaaagggg aaaaataaga aaaagggtat ggttcatatg gtaatacact     11220
     taaatagata gctatcgata gagtatacat agtgtctggg caaatattta gcacatggac     11280
     taaaacgcgt gctcttaggc aggaaccagg gttagcaact gatagtaaca gttttatgta     11340
     ttacagggtt gataaattca gcaatggggt ttctttttct tatgtataag tgccttctcc     11400
     atcggggggc cctactacta atatgttata gaatgttcgc aggtagtcag cgtggaagca     11460
     actctgaaag agatgggacc acggcagtaa acccgtcagc gccgcagcca acatccatcg     11520
     aaatgcagaa gactccaaga cgcctaatca acatcccagt agtcagcacg ggaacatcct     11580
     ccaagggtcg tgagtcagct acaggctcaa atgtgaataa attaaaagga gcgcagggcg     11640
     atgacgtcac gggacgtgta ata                                             11663
//
ID   Gypsy-5_CoFl-LTR repbase;    DNA;    INV; 377 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-377
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2299-2299 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 377 BP; 101 A; 91 C; 97 G; 88 T; 0 other;
     tgtaacgtac gatatgcaag gcatatcata ctgactctcc ctagtaacag cgaggcttct        60
     ttatcaagaa ggcatcgaca ggtggggaac aagctaatat aaggcccagc gagcctcaaa       120
     tcgcggcact caggcggcgt tcgggactca ggcggcactc gggcagtcaa ccagtcaggg       180
     agtcaagagt caagagtcaa ggagtcgagc agtcgggcat tcgcggattt gggaattaag       240
     ggtacacgac gagcctttga gggaaataca cgcgctactt tgcctttaat ttcggtgatt       300
     tgaataaagc tcttgatata atcaattgtt ggtcattctc gcgacgcacc tcctacctat       360
     ctctttccca cgtaaca                                                      377
//
ID   Gypsy-5_CQ-I repbase;    DNA;    INV; 3758 BP.
XX
AC   AAWU01034000;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_CQ_;
KW   Gypsy-5_CQ-LTR; Gypsy-5_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3758
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 389-389 (2011).
XX
DR   Genome; AAWU01034000; Positions   49675   53432.
XX
CC   Positions [2864-3376] - Integrase core
CC   'AGAC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1496..3742
FT                 /product="Gypsy-5_CQ-I_2p"
FT                 /translation="MIRAYHQIPVNEEDIEKTAVITPFGLYEFPRMQFGLC
FT                 NAGQTFQRFMHKVLGDLDFVVVYMDDICIASATAAEHKQHVRKVFERLRDF
FT                 GLVINMAKSKFAREQVEFLGYVVSHEGVLPLPDRVKAVSDFPEPATVKDLR
FT                 RFLALLNSYKRFIPHATDVQLALRNLIPGNKKNDTRKLVWTEEARSAFREC
FT                 KRSLSEATLLHYPDSRKPLALMVDASNTAAGAALQQLDGATWKPLGFFSEK
FT                 FSRTQQEYSTFGRELLAAKRAVEYFRYMVEGRKFVVFTDHKPLTFAMASNS
FT                 NSRLPHEQRYLKYISCFTTDIRHISGRKNVVADALSRVATISMPCPIDYEQ
FT                 MAVDQAVDNELQQLLTSGTSLKLVLKQTSLATKPLYCDVSVDGRIRPFVPA
FT                 QHRNSVLQFLHSIAHPGIRGTRRLLSDRFVWSSMNKDVRSFVKCCVDCQKS
FT                 KIHRHTRAPFESFNLPKARFRHIHVDLVGPLPPSNGQRYLLTIVDRFTRWP
FT                 EAVPLADMTAETVAWAICSSWIARFGVPEQITTDQGRQFESQLFRELAMLT
FT                 GSKHTRTTAYHPQANGLVERFHRTLKAAIMAVDSAHWVDRLPIILLGLRSA
FT                 LREDLGCSVADLVYGQPLRLPGEYFEPATTGTLQSDFVKQLQRAVGQLKPQ
FT                 KVMHHAKPLVFVQDELSKCSHVFVRIDAVKRPLQRPYDGPFEVVERHEKFL
FT                 DLLINGKRQRISLDRLKPAFLCDENVANHPLDDPSTKVTPSGHRIRFLV"
XX
SQ   Sequence 3758 BP; 900 A; 990 C; 1009 G; 859 T; 0 other;
     ctggtgaccc cgacgactaa agttaaaact gaaggcaaaa tgccagaggc cgaaacaaac        60
     acggatgcga acgaggaggc cgccggagcc gagaatgccg ccgtggccgc atcggtagct       120
     gtgaggttac ccgatttctg gcgcaacgac cccgccatgt ggtttgcaca ggctgaggcc       180
     caattcgccc tggccggcgt tgttcgggac cacacgaagt ataaccacat agtggccaaa       240
     gtggaccagc agacaatttg ccacatagcg gacttggtca ctgaccctcc tctaaccaac       300
     aagtatcccg caatcaaaag tcggctcatt tcccgtttcg tgatgtcacc tcaaggcaaa       360
     ctcgaacaac ttctcggttc gtgtgacctc ggtgacatgc gtcccacaca cctgctggcc       420
     aaaatgcagg agctgtcaat gggattgaac gtcaaccccg aattgctgaa gatgctgttt       480
     ctccagagga tgccggcgaa cgtcaaagcg atacttgcca tcagcgacgg gagtttgacc       540
     aagttagcgg agatggcgga caagatgctg gagtcggcgc tgaacgttgc cgctgttgct       600
     gcgaatcccg gtccaagcag acaagccgta tcaacagctg cgcactcgga ggatatgtca       660
     acagacgatt tgcgcgaaca agttgctttc ctgacggcgg aggttcggag gatgcggaca       720
     agatcaactt cgaggggccg atctgtatcg aggtccgggc gttctgcgga ggagatctgt       780
     tggtaccaca agaagtatgg tactcgggcc acaaggtgcc gagagccgtg tcagttttca       840
     aaaaacatag tgatcgtcca cgtgtttcgg cggaggtggg cggcctatcg caaagtcgcc       900
     gtcttctgat ctacgatcgt tcgagcaaaa caaaatattt gatcgacatc cagcttcacg       960
     ccgcaaatgg gagcaacatc aaggtctacg gctcccgctt cgtaaacatc gaccttggcc      1020
     ttcgaaggaa gttctgctgg aatttcctga ttgcgaatgt ggggatggca ataattggcg      1080
     ctgacttcct cgcaaacttc ggtcttctcg tcgatttgaa gaaccatcgc ctcaccgacg      1140
     gaaaaacagg actgcagtca tcggccggat tgacatctgc ggctgttttc ggcgtgacta      1200
     cggttgggtt cgaccatccg ttccgagacc ttctgcagga attccgggtt atcaccgtcc      1260
     cgaactcgat gcaaacagct gcaaagcacg acgtcaagca tttcatcgaa acaaaaggtc      1320
     cccccgttgc attcaaggtt cgtcgcttgg caccggacaa ggtcgacgca gcaagagcgg      1380
     agttcaaggt tatcgcgcgc tcaataaggt gactgtccca gacaggtatc ctgttcctca      1440
     tatacacgac cttttgtatg cgttccaggg aaagtccatt tttacaacgt tggacatgat      1500
     tcgcgcctac caccaaatcc ctgtgaacga ggaggatata gagaaaacgg ccgtaatcac      1560
     accgttcggc ctttacgagt ttcccaggat gcagttcggc ctatgcaacg cggggcagac      1620
     ctttcagcgg ttcatgcata aggtgctcgg cgacctggac ttcgtcgtcg tttacatgga      1680
     cgatatctgt attgcatctg ccaccgcggc ggagcacaag cagcacgtgc ggaaggtttt      1740
     cgagcgccta cgagatttcg gattggtcat taacatggcc aaaagcaagt tcgctcggga      1800
     acaagttgag tttctcggct acgtcgtcag ccacgaaggt gttctgccgc ttccggatcg      1860
     tgtgaaagct gtgagcgatt tcccggaacc agcgacggtg aaagatctgc ggcggttttt      1920
     agcgctcttg aacagctaca agcgattcat cccacatgct accgatgtcc agcttgcgtt      1980
     gcgaaacctc atccccggga acaagaaaaa cgatacccga aagctcgttt ggacggagga      2040
     agcccgatca gccttccggg agtgtaagcg gtctctttcg gaagccacgt tgctgcacta      2100
     tccggattcc agaaaaccgc tggcattaat ggtcgacgct tctaacacgg cggcgggggc      2160
     agctctgcaa cagctggatg gcgcaacctg gaaacccttg ggtttcttct cagagaaatt      2220
     ttctcgaact caacaggaat actcaacgtt tggccgggag ttgctagcag ctaagagagc      2280
     ggtcgagtat tttcgataca tggtcgaagg caggaagttc gtggttttca ccgatcacaa      2340
     gccgttgaca ttcgcgatgg cctcgaattc caacagtcgc cttccacacg agcagcgcta      2400
     tctgaagtac atttcgtgct ttacgaccga cattcgacac atcagcggta ggaagaacgt      2460
     tgtggctgat gcactgtcgc gggttgcgac aatttcgatg ccttgtccga ttgactacga      2520
     gcagatggcg gtggaccagg ctgtcgacaa cgaactgcag cagctgttga cttcgggcac      2580
     gtcgttgaag ctggtgctga aacaaacctc gcttgctacc aagccactct actgtgacgt      2640
     ctccgtggac ggtagaattc gaccgtttgt ccctgcgcag catcgtaact ccgttctaca      2700
     gttcctccat tcgatagcac atccgggaat tcgaggaact cgtcgtctgt tatctgaccg      2760
     attcgtttgg agttctatga acaaggatgt gaggagcttt gtgaagtgct gtgttgattg      2820
     tcaaaagtcc aaaattcacc ggcacacccg agcacccttt gaatcgttca atcttcccaa      2880
     agcacgtttc cgacacatac acgtggactt agtcggaccc ttgcccccat cgaacggtca      2940
     acggtacctg ctcaccatcg tcgacaggtt cacacgatgg cccgaagctg ttccacttgc      3000
     cgacatgacc gccgaaaccg tcgcgtgggc tatttgctcg tcttggatag cacgatttgg      3060
     ggtgccggag cagatcacaa cggaccaagg gagacaattc gagtcgcagt tgttccgtga      3120
     actggcgatg ctaacgggtt ccaagcacac gcggacgacg gcatatcatc cccaggccaa      3180
     cggattggtg gaacggttcc acaggacgct aaaggctgca atcatggcag ttgattctgc      3240
     tcactgggtg gaccggctgc ccatcattct gctgggactg cgttctgcgc ttcgcgagga      3300
     cctcggctgt tcggtcgccg acctagtcta cggccagcca ttgcgacttc ccggtgaata      3360
     cttcgagcct gctacaaccg gaactctgca gtcggacttc gtgaagcagt tgcagcgcgc      3420
     agttgggcaa ctgaagccgc agaaagtgat gcatcacgca aaaccattag tgtttgttca      3480
     agatgagcta tctaaatgta gtcatgtttt tgttagaatt gacgcagtta aacgccccct      3540
     tcagagacca tacgatggac cgtttgaagt tgtagaacga catgagaagt ttttagattt      3600
     gttgattaac ggaaagcgac agcgcatttc tttggataga ttaaaaccag cttttttgtg      3660
     tgacgaaaac gttgcaaatc atccactaga tgatcctagc accaaagtta ccccatcagg      3720
     tcataggatt cgctttctgg tgtaactggg gggagtac                              3758
//
ID   Gypsy-5_CQ-LTR repbase;    DNA;    INV; 153 BP.
XX
AC   AAWU01034000;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_CQ_;
KW   Gypsy-5_CQ-I; Gypsy-5_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-153
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 390-390 (2011).
XX
DR   Genome; AAWU01034000; Positions   49522   49674.
XX
SQ   Sequence 153 BP; 30 A; 34 C; 38 G; 51 T; 0 other;
     tgtggcggag tctgtggact cgccctttgc gtcattagtc gtgtcatcgt agtgacagtt        60
     tgatgtccgg tgtaaataaa gagtcagtct gattttaacc tgtacgtaac cggtcgtctt       120
     tatttcgatg cgccctcatt gcgattatcc aca                                    153
//
ID   Gypsy-5_DAn-I repbase;    DNA;    INV; 6799 BP.
XX
AC   AAPP01018630;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DAn_;
KW   Gypsy-5_DAn-LTR; Gypsy-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6799
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018630; Positions   48875   55673.
XX
CC   Positions [4433-4912] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2153..5149
FT                 /product="Gypsy-5_DAn-I_2p"
FT                 /translation="MRLLIDTGAAKNFIRPYEGLKGVRPVESPFAIHSIHG
FT                 VTTITKKCYVSLFNLKVTFFILPDLSSFDAIIGLDLLKQAGASLCLASGHL
FT                 KWGSEVENLEFQSCPDVNFTNIDCSDAPPLVKDTFIKMLGKRKKAFANPNE
FT                 ALPYNTSVVATIRTVSEEPIYAKLYPYPMGAADFVNSEIQELLKNGIIQKS
FT                 KSPPAGNRKMRLVLDFRKLNESTIPDRYPMPNISMILGNLGKAKYFTTLDL
FT                 KSGYHQITLAERDREKTSFSVNGGKYEFRRLPFGLKNAASIFQRTIDDILR
FT                 EQIGKFCYVYVDDVIVFSEDENAHIRHVDWVLKSLLDANMRVSAQKSRFFK
FT                 KSVSFLGFIVTNKGATTDPEKIKAIQEFPEPKNVFEVRSFLGLASYYRCFI
FT                 KDFASIARPIHEILKGEHGSVSRHRSRNIQVQFSEQQRFAFHKLRNILASE
FT                 DVILSYPDYKMAFDLTTDASAYGIGAVLSQKGRPITMISRTLKDREVNYAT
FT                 NERELLAIVWALGKLRHYLYGVKDINVYTDHQPLTYAVSDSNPNTKIKRWK
FT                 ERIDEYGAKVHYMPGKDNLVADALSRQQLNVVEEEEAFSSAATIHSELSLT
FT                 HTIPSTDKPLNCFQNQITLEEARCSSKRSFVLFGNKRRHNIDFSCEESLLE
FT                 ELADIIVPKGVNAIHCDLHTLAMVQDKLVRQFPATKFWHCKNRVTDIFAID
FT                 ERREILTVEHNRAHRSAQENVKQVLSEYYFPKMAKLASEIVANCRTCAKAK
FT                 YDRHPKKHELGETPIPSHVGEMLHIDIFSTDKKHFLTCIDKFSKFAIVQPI
FT                 SSRTIEDLKPALLLLMNVFPKTKVIYCDNEPSLKSHTILTMLENHFGVNVS
FT                 NAPPLHSTSNGQVERFHSTLVELARCLKIDKGISDTVELILLATARYNNSI
FT                 HSVIDKRPADVIQTQTEEPLYEIQDKIRIAQDKLRNRENASRQNRVFEVGE
FT                 KVLVKSNRRLGNKLSPLCEEKVVEADMGTTVLIKGRVVHKDNLR"
FT   CDS           5545..6798
FT                 /product="Gypsy-5_DAn-I_1p"
FT                 /translation="MIHMFPQSHMQKLLSVDVAHLRDLLESLSIHHRVARS
FT                 LDFLGAALKVVAGTPDAEDFEKVRLTEFQLINANNRQVNINSKVQEQINNI
FT                 TNTVNQILRSAKESQIDSGHLYEMLLSRNRMITMELQNLLLAIALAKINIV
FT                 SPSILDHADLESMWIEEPTDTPIKDILSVASVKVLQSANIIHFIIKFPKIK
FT                 SACVKITIFPVSHHDTMLRLEDKVIADCDGEIHTVKNCSMSSGVTFCQLAL
FT                 RRSCAQELHAGGIAHCDIQHSDLHPVTYVDEGILIINDRPARVSVDKGTYI
FT                 HLQGTHLITFIESATVNETRYINHDTAQKRAPGVASSPSLNISLEHNILSL
FT                 PYLHRLSERNLEHIKRFGEDVNNYRSRQIALVAGAVFCALICIGLTYWRVT
FT                 QAMRSTAQLKEVIAQIGSAEDGLN"
XX
SQ   Sequence 6799 BP; 1988 A; 1634 C; 1498 G; 1679 T; 0 other;
     tcttattaat tggcgcccaa cctctttaag tacccactgt agcaaattgg ggaaacatgt        60
     aagtgagcac ctccaataca tatactttcc catatctgca ttagtttagc ttcaaaataa       120
     ataaaataaa tcgctgccgg aataatttct gcagctccac tttaatattt ttgtgttaac       180
     tttgtattaa attaaaacta attaactcat tatttgattg acaatttaat ggtgaattat       240
     atgtgcgata ataatatctg ttttatgctg tctgtgtatt gtttgcattt tactgccaaa       300
     aataagtacg gatattaaat atctctaaag cactaggcag tcgctaacga acaaatttgt       360
     cgtgaatttg tttaaaatca tttttcactt aatatcggcg tttaattctg cagtttggat       420
     attcataaat tgtgaatttg tttatataat tcgttgtgcc tctttgctta gaccctaaat       480
     tcttagtatt tgcctcgcaa tacattttgt ttttattacc cccactcggc cactgctgga       540
     aatccgatcc cgctgcatat gcatttgtat ggcaaattct tgctattcat ttctttgttt       600
     ctcatagcgg aggctcagtc cccgcatacc cttaacccta tcgctgcttg gcagggcacc       660
     ggctcgattt gacgaactca tttacttgtc gctagagcgg cggctccgac cccgcacacc       720
     ccttgccatg ccaactgcct tcatgggcag aatagcttga gcaaacattc ccctaccggt       780
     gcaatttaac ttggccacat atgagctctc cattccagcg gtacagggag aataaacaat       840
     acgctagtga ctcagaatct gatagcgaag ggcccccgcg tactaacccc acagtaggaa       900
     ttatggaccc agaacaactt aaagttgtaa ttcaggccgc ggttaaccat gccttggcag       960
     aaagggtcaa caaggagcaa gaattgcgcc aagccataga gcagttggcc gctcaggtgg      1020
     cagcggtgca agtcgcaccc gcacaagcag gggctccaaa aatcaaggtt tatgaaccca      1080
     ttgacatcaa agacaatgtt caatgcaatg aacctttaga tgccgttaaa tgcctgcccg      1140
     aatttacggg ggcacaagaa acgtacgtct cttggcggca agcggcggta gctgcgcggt      1200
     cgatgtatta catttttagg aattatgtta atagctcacg ccattatcag gcggtagtca      1260
     taattaggag taagattagg ggccctgccg atgcagtgct atcctcgttt ggcacaatat      1320
     tgaattttga tgcgattata gaccgcttag atttcacata tagtgacaaa cgacagattc      1380
     acgtcatcga gcaggaaatg ggcaccctca gatagggaag cctcacgctt ctgcaatact      1440
     atgacgaggt cgagaagaaa ctcaccttgc tcactaataa ggcaactatg tcgtacgaag      1500
     cgtcggcggc aagaatttta tgcgaaaagt tccgggatga tgcgctccgt atttttattt      1560
     cgggactcaa acgcagcctc tccgatgtcc ttttctcggt aaagccgaag gacatgccaa      1620
     ctgcgctggc attggcgcaa gaagttgaat caaaccacga gaggtacacc ttcgcggcat      1680
     cgttcgcgaa gagcctggaa gatagggaca ggaaacaagt tccaaaggcg caagatcgcc      1740
     aacaaacatc atatcaaggg tactcccaag ggggtgcggg taaaaacccg cacttcacca      1800
     aacaacacaa ggctcaggtg cactccgctc cgagcggtga caggcgtcac gaaaacacgc      1860
     cagagcccat ggacgttgac ccttcaatgt ctaggttgct caagccatct caagcgccgg      1920
     cctaccaaaa taggaagccg gccggatccg atcggtccgg cccgcccaaa aggcagagga      1980
     taaaccacgt tacccaaagc ccaaatggaa ctgaggatta taccgccgca gcttcaagcg      2040
     cggcacaaga ggtcagtgac gatgctatcc ttgaatacga ctcagacgca attaattttt      2100
     taggggaaaa tccctgctac ctgtcatcag acgaagagta gcgggggtaa acatgagact      2160
     tttaatagat acgggcgcgg caaaaaattt catccgtccg tacgaaggat tgaaaggtgt      2220
     ccgcccagta gaatcgccat ttgcgataca ttcgatccat ggcgtcacca ctatcactaa      2280
     aaagtgttat gtttccctat ttaacttgaa ggtcacgttc ttcatattac cagatttgtc      2340
     ctcctttgat gccataattg gtcttgacct gttaaagcag gcaggggcat cgctttgtct      2400
     agcttccggc cacctcaaat ggggctccga agtagaaaat ttagagttcc aatcgtgccc      2460
     cgacgtcaat tttaccaaca ttgattgctc ggacgcgcca cctctagtta aagatacctt      2520
     tatcaaaatg cttggcaaac gaaagaaagc cttcgcaaac cccaacgagg ccctgcctta      2580
     caacacgtcg gtggtagcta ccatcaggac ggtaagtgag gagcccattt atgcaaagct      2640
     ttacccatac ccaatggggg ctgcggattt tgtcaacagc gaaatccaag agttgctaaa      2700
     gaacggcata atacaaaaat caaagtcccc ccctgcgggc aaccgaaaaa tgcgactcgt      2760
     gttggacttt cgcaaattaa acgagagcac gatacccgat cgctatccca tgccaaatat      2820
     ctctatgata ctagggaatt taggcaaagc caaatacttc acgacacttg atctgaagtc      2880
     aggctaccac caaatcactt tggcagagcg tgaccgcgaa aagacttcct tttccgttaa      2940
     cggaggaaag tacgagtttc gccgtcttcc gtttggcttg aagaatgctg ccagcatctt      3000
     ccagagaacc atcgacgaca tactgcgaga gcagattggc aaattttgct atgtctacgt      3060
     tgatgatgtc atcgtttttt cagaagacga aaacgcccac atacggcatg tggattgggt      3120
     tcttaagagc ctgctcgacg ccaacatgag ggtgtcggca caaaaatcgc gtttctttaa      3180
     aaagagcgtt agtttcttgg gctttattgt cactaataaa ggtgccacaa cagacccaga      3240
     aaaaatcaag gccatacagg aattccccga acccaaaaat gtattcgagg tgagatcgtt      3300
     ccttggcctg gccagttatt accgatgctt catcaaggat ttcgcatcaa tagctaggcc      3360
     catacatgaa atacttaaag gggagcatgg aagtgtcagt aggcacagat ccaggaatat      3420
     ccaggtgcaa tttagcgagc agcaacggtt tgctttccat aagttgcgta acattctggc      3480
     ttcagaggat gtcatcctca gctatcccga ttataaaatg gcatttgatc taacgacaga      3540
     tgcctcggca tacggcattg gcgcagtgct ttctcaaaag ggacgaccca tcactatgat      3600
     ctccaggacc ttaaaggaca gagaggttaa ctacgctacc aacgaaaggg agctgttagc      3660
     catagtttgg gcactaggaa agctgcgtca ctacctgtat ggggtcaaag acataaatgt      3720
     ctacactgac caccaacctc tgacctacgc ggtgtcggat tctaatccga atacgaaaat      3780
     taaaaggtgg aaagaacgca tcgacgagta tggtgccaag gttcattaca tgcctggcaa      3840
     agacaacctc gttgcagatg ccctctcaag gcaacaactc aacgttgtag aagaagaaga      3900
     ggcgttttca agcgcggcca caatccacag tgagctgtcg ctaacccaca ctatcccgtc      3960
     aacggacaag cctctaaatt gcttccaaaa ccagataact ctggaagaag cccgctgttc      4020
     gtcgaaacgc agcttcgttc tctttggaaa taagagacgg cataacattg acttctcttg      4080
     cgaggagtca ttgctggagg agctcgcgga cataatagtt cctaaaggcg taaacgccat      4140
     ccattgcgat ttgcacacgc tagcaatggt acaggacaaa ttggttcggc agttccctgc      4200
     caccaaattt tggcactgca aaaaccgagt aacggatatt tttgcaattg acgaaagacg      4260
     ggaaattctc actgtcgagc acaacagagc tcacaggtct gcccaagaaa acgtgaagca      4320
     agtactctcc gagtactact tcccgaaaat ggctaaacta gcaagcgaaa tagtcgctaa      4380
     ttgtaggaca tgcgctaagg cgaagtacga cagacacccc aaaaagcatg agcttggcga      4440
     gacgccaatc ccatcgcatg taggagaaat gctacacata gacatttttt ccacggacaa      4500
     aaaacatttc cttacgtgca ttgacaaatt ctcgaaattt gccatagtcc aaccaatttc      4560
     ctctagaacc atagaggacc tgaaaccggc attactactg ctgatgaatg ttttccctaa      4620
     aaccaaggtc atatattgcg acaatgaacc atcgttaaaa tcgcacacca ttttgaccat      4680
     gctggaaaac catttcggcg ttaacgtttc aaacgcaccg cccctccaca gtacctcaaa      4740
     cggacaagtg gagcgcttcc acagcactct agtggagctc gccaggtgcc ttaaaattga      4800
     taaaggcatc agtgacaccg tcgagctaat cttgctggcc acagccagat acaataattc      4860
     tatccattcg gtcattgaca agaggccggc tgatgtgata caaacacaaa cggaagaacc      4920
     attgtatgag attcaggata agattaggat tgcccaggat aagctcagaa acagggaaaa      4980
     tgcttcccga caaaacaggg tgttcgaagt tggcgaaaaa gtcctagtaa aatccaacag      5040
     gcgactaggc aacaaactct ctccattgtg tgaggagaaa gttgtggaag cggacatggg      5100
     gaccacagtc ctcattaagg ggagggtggt ccacaaggac aaccttaggt agacgaggca      5160
     tggccatgtt gacttgattc gtctgataat ttttactacc tttttttcac aatttttaat      5220
     cctagccact tggcataagt tttcttattt tttatttgtc attaccattg tttttactta      5280
     ggctattcta cgctttattt tatatgcttg gtggtgggct tcttaaatct tgcaaaacac      5340
     tacaataaat ccgaaaatta caggttcact actatacctc tgttattcct tttgacccta      5400
     acatcggcac acgtcacgga ctactcacag gccaagtaca ttcccatcat tgatggtcga      5460
     atattagtat gggaagaatt tgcattcgtg agacacacgg caaatctctc agaatacagg      5520
     cgcgtggtgg aagagactaa taacatgatt cacatgtttc cccagtcaca catgcagaaa      5580
     cttttgagcg tagatgtcgc tcacctgcgt gacctgctcg agtcactgag catccaccat      5640
     agagtagcta ggagtttaga cttcttggga gcggcgttaa aggtagtggc gggaacgccg      5700
     gacgcggagg attttgaaaa agttaggctt accgaattcc agctcattaa tgcaaacaat      5760
     agacaggtca atattaacag taaagtacaa gaacagataa ataacattac caacacagtc      5820
     aatcaaattc tgaggtcggc taaagaatcc caaatcgatt cgggacacct atacgagatg      5880
     ttattatctc ggaatagaat gattacaatg gagctgcaaa atttattgct tgcaatagcg      5940
     ctcgccaaaa tcaatatagt tagccctagc atattagatc atgcagacct ggaaagtatg      6000
     tggatagagg agcccacaga tacccccatc aaagatatat tgtccgttgc gtccgttaaa      6060
     gttttacaat ccgctaacat tattcatttc attatcaagt ttcctaaaat taagtcagct      6120
     tgcgtcaaga ttacaatttt tcccgtgtca catcacgaca caatgctcag actggaggac      6180
     aaggtcatag cggactgcga tggagagatc cacactgtaa aaaactgctc catgtcatcg      6240
     ggagtaacgt tttgccaact ggcgttgaga agatcttgcg cccaggaact ccacgcgggt      6300
     gggattgcgc actgcgacat ccagcatagc gacctgcatc ccgtcacgta tgtggacgaa      6360
     ggaatcctca tcataaacga tcgcccggct cgtgtgagtg tcgacaaggg cacttacatc      6420
     cacctacaag gaacacacct tatcaccttc atcgagagtg ccacggttaa tgaaacccgt      6480
     tatatcaatc atgatacggc ccagaagagg gcaccaggag tagccagctc gccttccctg      6540
     aacatttctc tggagcacaa tattctcagc ctcccttacc ttcaccgctt gagtgaacgt      6600
     aacctggagc atatcaagag atttggggaa gatgtcaaca actaccgctc gcgccagata      6660
     gctctagtcg cgggagcagt tttctgcgcg ttgatttgta tcggcctcac ttattggcga      6720
     gtcacccagg ccatgagatc tacggcccaa ctaaaggaag tgattgccca aatagggtcg      6780
     gccgaggacg gccttaatc                                                   6799
//
ID   Gypsy-5_DAn-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   AAPP01018630;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DAn_;
KW   Gypsy-5_DAn-LTR; Gypsy-5_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-481
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018630; Positions   48394   48874.
XX
SQ   Sequence 481 BP; 133 A; 133 C; 101 G; 114 T; 0 other;
     tgtaagttaa ctaagtcaac cgggcgacgg caacgaccga tcgtccgaca gctcgctccg        60
     gccaaactgc tgacccagcg tctggccgga agctcgtgca tagccggcaa gcactgccca       120
     ttggagtggc cgctatgagt ctcgcttttg ttagttctta agttcagttc tgttttgaca       180
     attatgaaat aaagagccat cgctctcata ccgaaactcc gacgatccgt cgtaaagcat       240
     ttattattat aaatctgact gagtctctag gccagcagat aaagagggac agtcatccct       300
     ccaacctaat cttcccaatt ggatattcta cggccagccg gctagaagac atcaaagggc       360
     ctgttgcccc aaccttacat ctccaggaac aatccttggc ggaatagaaa ttgtcaacgg       420
     cgaatcatca ccgcacaaca tcttattaat tttgtcaacg gcgaatcatc accgcacaac       480
     a                                                                       481
//
ID   Gypsy-5_DAzt-I repbase;    DNA;    INV; 7418 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-7418
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 759-759 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1755
FT                 /product="Gypsy-5_DAzt-I_1p"
FT                 /translation="MDHDTDCDQSEYGPAELAQNPGVGTGWIYQRRRDELE
FT                 GFADEFGFDKEGTVEDLRKTFAAFTEGKLEPATWTRLAELERQYARSAVRT
FT                 RSPQPTAKTPSEKKKVIDQKLGLQVPPAVVSKGNVPPIVLTAEGRQQIPRS
FT                 TESSPVQARRVFPPMDPKQRHEEDRVQASTSPLRTFQVADRIRHWGIQFNG
FT                 HDDPLAFVESLEERALSYGIDMNHLPRVMVGLFSDRASLWFRTSRLQNASW
FT                 VEFRQEFLTFFLPPRYFEQLEDKIRIRKQVAGELFKDFVLDIRLLMHHAGY
FT                 DATQELKRIYDNALPGYQLYVRRHELQSLAQLTQLAGEFESIQGPQNPDGR
FT                 FPSAINPPRRIPRYEHHDLPHEYNRPEAPQTRNPFRQTPDKRVDPMNKRDS
FT                 SQACTPAGDVANRAIQHDTTPIANALAACRRCGEPDHLSANCRNNPILFCW
FT                 ECGRRNVRTIQCCRREASGN"
FT   CDS           1728..5525
FT                 /product="Gypsy-5_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MLPTRSLGKLVASSPEMGTAEDDATENPKPKGPLHVH
FT                 DGRIVAMVTIGGRPTEATIDTGATRSFVSQDLAERLSTDINTQAAAIRIRL
FT                 ADGSVREVTQILLTPTQLHTRQVQIPLLILPNMVESVILGMDFLCAIETTI
FT                 QCGTTRLHLRGHCTNIDEPKGSPSLTQTPEPGNENLKHKTTASASLTQNKN
FT                 KRPAAATTVTTSHTENQHKRRATASIPPASTTQNRNPRHATENTTSAAGNT
FT                 DLKPATATLTTGIAPTYIRQNQTTENSATRRSTKTGDILTSSGNARTRKST
FT                 EITNTGEPEGTNVVGPVTNMGSELRQDPGTAVIANTQTVIANITECPASSD
FT                 PSSPFDTTILPECPDQPTSPEMKDASRDDPAGDLQPWPPDIAHHIRAFLDE
FT                 ELPKFENLQGTTDLTEHTIVMRDSRPIKQRYYPKNPAMMRIIDKQVDELLT
FT                 EGLIEPSRSPHSAPIVLVRKKNGQWRMCVDFRQLNERSIPDAYPLPRINHI
FT                 LERLKNARFITTLDLKNGYWQVPMARDSREATAFTVPGRGLYQWKVMPFGL
FT                 HSAAATFQRTLDMEPFAFAYLDDIVIVGKDYAEHLQNVKQVFARLRKANLR
FT                 INTDKCAFFQRRLKYLGHVVSEEGVHTDPDKIAAVKDLRPPTNLKELRQCI
FT                 GMASWYRRFVPNFAAVVQPMSQLLKKGHAWTWTPVQQEAFDNLKSLLTTAP
FT                 VLACPDFAAKFSLQTDASDLGIGAVLTQDIEGKERVIAYVSRRLNKAEENY
FT                 SATDKECLAVIWAIRKLRCYLEGYRFNVITDHLALKWLNTLESPYGRVARW
FT                 ALELQQYQNDVQYRPGKQNVVADALSRQPLDTLAYVEGEKTDCLWLKRRIR
FT                 QVRDEPQKYSDYRYENGQLYRHLGHRADDEDYVSWKLCVPKDSRLRVLREC
FT                 HDQPTAGHLGVRKTITRISQRYYWPGMYRDVRQYVRGCLCCQKFKVTQQKP
FT                 AGMMLTRQVNEPFTTLCADFVGPLPRSKRGNTTLLVFFDIFSKWVELVPLR
FT                 KATATNLERAFRERILSQFGVPKLFVCDNGTQFTSRSFKAFLKSAGVTLQH
FT                 TAPYCPQENPTERANRTIKTMISQFIDGEQRTWDELLPELSLAINSSVSDT
FT                 TGFSPAFLIHGREPRLPGALYDELTPGTGSKPEPALAKAARLKEIFDIVRN
FT                 NHQQASQEQGRYYNLRRRQWRPAIGSLVLVRQHSLSNAAEGFAAKLAPKFE
FT                 GPYRVQRFISPNVIRLQHQTSRKRRTANLADLREFHSNEDPEDQTSQTDDD
FT                 QEVVE"
FT   CDS           5714..7417
FT                 /product="Gypsy-5_DAzt-I_3p"
FT                 /translation="MDVDEDSCSETPPRDARTRVEAEMEAYMASTDYSSSE
FT                 DDLPTSARSRDSHAPPPASYGRRPAGEPSAWIDLTSSPMDTEDSPQTRSIS
FT                 SPLYTRRTSRDYSPSYESTTPGRPLTPKTGDCPFSRRNGPECPSNPAGIWS
FT                 YYPSATAAPDSATGSVPNPPYRSPQYTEEDPVPQRPNRDPRTGRGVYQLVT
FT                 PEPELTRYNPPPRDPYEEDDSDEEYYVQEYVTRSEDYHYVVTPRGMRVTQV
FT                 LRTTVDVAIPVNRRVGEFFGTFREPAEALLEAPVYPPNTPEPDDVPPKAKP
FT                 GNANAPELDDTPLKVKTAEADDPEQVGRVDPEQVGRVDVDPEPEETDEPLS
FT                 TAPPAKRPRPALDGDPEYTTYIAKWDSVSSLEDDEAPRFRRTYPPPSLTQP
FT                 DEQWEVDAGIPTDPGKFFLPIRFRRVKVPNANSTQDSTPRPNQEPRPQSPN
FT                 PDAVPLELFGLMPLPEGGSLDEDFEELLQIMGSDVDVDEFLRENNLGHNGE
FT                 PYTDPWEEAPESWNVYTPERKLPAVLIKEILARGNTGKRARFTIDHRGQKY
FT                 QISRAKSGHIRVTLHHGRKGG"
XX
SQ   Sequence 7418 BP; 2052 A; 2271 C; 1853 G; 1242 T; 0 other;
     agtggcgccc gagcagggac ctgagggaat ttcaagggaa ggcgacagcc accaaacgaa        60
     atttacacgc gcaaccatcg caacgcaagc accgcggccc gcgtcagtga aacccgcgcg       120
     agtataacgc caagtgaaaa gtaccgggac acagacggag tactagcaca acccgcttag       180
     ggtcgagact aaagtgaaag ctccagagaa caagaccccc gagggcagtg tacaaaaaaa       240
     cggtagacaa cgcccccaga gacaaagaca agccagaccg taaatcccgg tagggtagtg       300
     taaaggaaaa acccagcgag cgccccacgt ttcctacgcc tctgaccgct gttcctcgtc       360
     atggaccacg acaccgactg tgatcagagt gagtacggcc ctgcagaatt agcacaaaat       420
     ccgggggtgg gtaccggttg gatataccaa cgccgccggg atgaactcga aggcttcgca       480
     gacgagttcg gattcgacaa agaaggcaca gtcgaggacc tgaggaagac cttcgccgca       540
     ttcaccgaag gcaagctcga acccgcgact tggactcgcc tagcagaact cgagaggcag       600
     tacgctagat ctgcggtgcg tactcgatca ccgcaaccca ccgccaagac cccgtctgag       660
     aagaagaagg taatagatca aaagcttggc ttacaagtcc ctccggccgt cgtcagcaag       720
     ggcaacgtgc caccgattgt cctaacggca gaaggccgcc agcaaatacc ccggtcgacc       780
     gagtccagcc cggtacaggc gaggagagtt ttccccccga tggacccaaa gcaaagacac       840
     gaggaggata gagttcaggc gagcacttca cccctccgca ccttccaggt ggcggatcgg       900
     atccgacact ggggtatcca gttcaatggc cacgacgatc ccctggcatt cgtagaatca       960
     ctcgaggaac gtgccctgtc ctacggcatc gacatgaatc atctcccgcg agtcatggtc      1020
     ggacttttca gcgaccgggc tagcctttgg ttccggacca gccggctcca aaacgcctcg      1080
     tgggtcgaat ttcgccaaga attcctaact ttctttctcc caccgcgata tttcgagcag      1140
     ttggaagata aaatccggat acgtaagcaa gtggccggag agttattcaa agacttcgtc      1200
     ctggacatac ggctgcttat gcaccacgct gggtatgacg cgacccagga actaaaacgc      1260
     atctatgata acgcgttgcc cggataccaa ctgtacgtgc ggaggcacga actccagagc      1320
     ctggctcaac tcacccaact ggcaggggaa ttcgagagca tccaaggacc ccagaaccca      1380
     gatggccggt tcccttccgc tattaatccc cctcgaagga tacccagata cgaacaccat      1440
     gatttgcccc acgaatataa tcgtccggaa gctccccaga cacgaaaccc gttccgtcaa      1500
     acaccagaca agcgtgtaga tcccatgaac aaacgcgact cgtcccaggc ttgtacccct      1560
     gcgggagacg tagccaacag ggcgattcaa cacgatacaa cacccatcgc caacgcactc      1620
     gcagcttgcc gacggtgcgg cgaaccggat catttatccg cgaattgccg gaacaacccc      1680
     attttattct gttgggaatg tggtagacgg aatgtccgga ccatacaatg ctgccgacga      1740
     gaagcctcgg gaaactagtc gcgtcttcgc ctgagatggg aacagccgaa gacgacgcca      1800
     ccgagaaccc caaaccaaaa ggacccttgc acgtacacga cggacggata gtggcgatgg      1860
     tgaccatcgg agggcgaccc acagaagcca ctatcgacac tggagcgact cgaagtttcg      1920
     tcagtcaaga cctggctgaa cgattgtcca ccgacataaa tacccaggca gcggcgatac      1980
     ggatacgcct agcggacggg tccgtgcggg aggttaccca aatcctacta acacccaccc      2040
     aactgcatac acgccaggta caaatacccc ttctaatact accgaacatg gtcgaaagtg      2100
     tgatcctggg tatggatttt ttgtgcgcta tagaaaccac gattcaatgt ggcactacgc      2160
     ggctgcatct acgaggtcac tgcaccaaca tcgatgaacc caagggtagc cccagcctta      2220
     cacaaactcc cgaacccggg aacgagaact tgaaacacaa gaccacggct tcagcatcac      2280
     tcacccagaa caagaacaag agacccgcag cagcgaccac ggtcacaact tcccacaccg      2340
     aaaaccagca caagcgacga gcgacagcga gcatacctcc ggcatcaaca acgcagaaca      2400
     ggaaccctcg acacgcaaca gagaacacga catcagcagc aggcaacacg gatctcaagc      2460
     cagcaacagc aaccctgact acgggaatag cgcctacgta cataagacag aaccaaacaa      2520
     cggagaattc ggccacgaga aggtcaacca agactgggga catactgacg tcttcaggaa      2580
     acgcgaggac gcgaaaatcc accgagatta caaacaccgg cgagcccgag ggcacgaacg      2640
     tcgtcgggcc cgtgacaaac atgggatcgg agttgcgaca agatccgggt acagccgtca      2700
     tagccaacac ccagacggtt atcgccaaca tcaccgaatg ccccgctagc tcggacccct      2760
     ctagcccatt cgacacgacc atcctcccag aatgccccga ccaacccacc agccctgaaa      2820
     tgaaggacgc cagtagagac gacccagcag gagacttaca accctggccc ccagacattg      2880
     cgcaccacat tcgcgcgttc ctagacgaag aattacccaa attcgagaac ctccagggaa      2940
     cgacagacct aaccgaacac accattgtta tgagagatag tcgcccaata aagcaacgat      3000
     actatccgaa aaacccagcc atgatgcgta ttattgataa acaggttgac gaactcctaa      3060
     cagaaggcct tatcgaacca tcgcgaagtc cccacagcgc cccaatcgtc ctagtccgta      3120
     agaaaaacgg gcaatggcgt atgtgtgtag atttccgaca gctgaacgaa cgttcaatcc      3180
     ctgatgcata cccgttgcct cggatcaacc acattctcga acgcctcaag aacgcgcggt      3240
     ttatcactac tttggatttg aaaaacggtt actggcaagt acccatggct agagatagtc      3300
     gcgaagccac ggcgttcaca gtacctggga ggggacttta ccagtggaaa gtaatgcctt      3360
     tcggactaca ttcggcagcc gcgactttcc aacgtaccct cgacatggaa ccgttcgcat      3420
     tcgcctactt agacgatata gtgatagtgg ggaaggatta tgcagaacac ttgcaaaacg      3480
     taaaacaagt gttcgcacga ttgcgcaagg ctaaccttcg gatcaacact gacaaatgcg      3540
     ctttcttcca gcgtcggcta aagtatctag gccacgtagt tagcgaggaa ggggtacaca      3600
     cggaccctga caaaatagcg gcagtcaaag acctgagacc gcccaccaac ctcaaagagc      3660
     tgcgccagtg catagggatg gcatcgtggt accggaggtt cgtcccaaat ttcgccgccg      3720
     tagttcagcc catgtcccag cttttgaaga agggacacgc gtggacatgg accccagtgc      3780
     aacaagaggc tttcgacaac ctcaaaagcc tactaaccac cgcccccgtc ctcgcttgtc      3840
     ctgacttcgc ggcgaagttt tcattacaaa cagacgcgag cgacctcgga ataggcgccg      3900
     ttctcacaca ggacatcgaa ggcaaggagc gcgtcatcgc gtacgtcagt cggcgcctca      3960
     acaaagccga agaaaattac tccgctacag acaaagaatg tctagccgtg atatgggcga      4020
     tcaggaaact ccgttgttat ctcgaaggtt acaggttcaa cgtcatcacc gaccacctgg      4080
     cattaaagtg gcttaacacc ctcgagagtc cctacgggag agtagcaaga tgggcgctcg      4140
     aactgcaaca gtaccagaat gacgtacaat accgaccggg gaaacagaac gtggtggccg      4200
     acgccctatc gagacagccg ttagatacgc tcgcgtatgt ggaaggtgaa aagacagact      4260
     gcctctggtt gaaacggagg atacgacaag tgcgagacga accccagaag tactcggatt      4320
     acaggtacga aaacggacaa ctctaccgac acttgggaca ccgagccgac gacgaagact      4380
     acgtttcgtg gaagctttgc gtacctaagg atagtcggct gagagtgtta cgcgaatgtc      4440
     acgaccagcc gaccgccgga cacctcggcg tacggaaaac catcacaagg atatcacagc      4500
     ggtattactg gcctggcatg taccgggacg tacggcaata cgtccgaggg tgcctctgct      4560
     gtcaaaaatt caaggtaaca caacaaaagc ccgccggtat gatgcttacc cgtcaagtca      4620
     acgaaccatt tacgacactg tgcgccgact tcgttggacc tctcccccgc tcgaaaagag      4680
     gtaacaccac cttactcgtg tttttcgata ttttttctaa gtgggtcgag ctggtccccc      4740
     tgaggaaagc caccgcaacg aacctcgaac gggctttccg agagcgaatt ctcagccagt      4800
     ttggagtccc gaagctgttt gtatgcgata atggcaccca gttcacaagc cgatccttca      4860
     aggcgtttct caagtcagcc ggagtaacgt tgcaacatac cgcaccctac tgcccgcaag      4920
     aaaatccaac tgagagggct aataggacaa tcaagaccat gatttctcaa tttatcgacg      4980
     gcgagcaaag aacctgggac gaactactgc ccgagttgtc cttggcaatc aattcgagcg      5040
     tctcagatac gacgggtttc agtcccgcgt tcctgatcca cggccgagaa ccccgcttgc      5100
     ccggcgccct gtacgatgaa ctcacccctg gaaccgggag caagccagaa ccagcgctcg      5160
     ctaaagcagc ccgtctaaaa gagatttttg acatcgttcg caacaaccac caacaagcca      5220
     gccaggaaca ggggcgttac tacaacctgc ggaggagaca atggcgaccg gcgatcggat      5280
     cgttggtgtt ggtgcgccaa cactctctct cgaacgccgc agagggcttc gcggccaagt      5340
     tagccccaaa attcgaggga ccctaccgag tccagcgctt catctcgccc aatgttattc      5400
     gcctacaaca ccagacaagc cggaagcgga gaaccgccaa cttagcagat ctccgggagt      5460
     tccatagcaa cgaagaccct gaagaccaga ccagccagac cgacgatgac caggaagtag      5520
     tagaataatc tagcttttaa tacttttgac aacttaccta cccaacgttt gtactaacat      5580
     gtattacata gtctacctaa gtatcagagt aggagttagt tacaaggctg caccaccgtg      5640
     accagtagat ataaacattt tgcgtcgatt aagctatcta ttccccgtct agagataagc      5700
     accagcccgc atcatggacg tggacgagga ctcctgctcc gagaccccgc cgagggacgc      5760
     aagaaccaga gttgaagccg aaatggaggc gtacatggct tcaaccgact atagctccag      5820
     cgaagacgat ctgccgacct ccgcacgctc acgagatagt cacgccccac ccccggccag      5880
     ctacggccga agacctgcag gcgaaccatc agcctggata gacctcacct catcccccat      5940
     ggacaccgag gactcgcctc aaactcgctc gatctcgtca cccttataca ctcgacggac      6000
     tagccgagat tattccccga gttacgagtc aactactcca ggacgccctc tcacgccgaa      6060
     aaccggcgac tgcccgtttt cacggcgtaa cggtccggag tgcccgtcca atccagcggg      6120
     gatatggtcc tattacccga gtgccacggc tgcacccgac tccgctacag gatcggtccc      6180
     taacccgcct taccgctctc cacagtatac ggaggaggac ccggtacccc aaaggccgaa      6240
     ccgtgatcca cgtacgggac gaggtgtata ccagctggtc accccagagc cagaactgac      6300
     gagatacaac cccccaccca gagaccccta cgaagaagac gacagcgacg aagaatacta      6360
     cgtacaagaa tacgtcactc ggtcggagga ctaccactac gtggtcacac cacgcggcat      6420
     gcgggtcacg caggtgctgc gtaccaccgt ggacgttgca atccccgtaa accgtcgcgt      6480
     cggtgagttc tttggtacgt tccgggaacc ggccgaggcc ctcctagagg cccccgttta      6540
     cccaccaaac acacctgagc ccgacgacgt ccctcctaag gccaaaccgg gtaacgcaaa      6600
     cgcacctgag ctcgacgaca caccactcaa ggtcaaaacc gccgaagcag acgaccccga      6660
     acaggtgggc agagtcgacc ccgaacaggt gggcagagtc gacgtagacc cggaaccaga      6720
     agagactgac gaacccctga gcacagcgcc acctgccaaa cgaccgcgcc cagccctgga      6780
     tggagatccg gagtacacga cgtacatcgc caaatgggac tccgtatctt ccctagagga      6840
     cgacgaggcc ccccgattcc ggcgaacata tcctccgccg agcctcaccc aacccgacga      6900
     gcagtgggaa gtcgacgcag ggataccgac cgaccccggg aagttttttc tccccatccg      6960
     cttccgccga gtaaaggtcc cgaacgcaaa ctcgacacaa gattcgacac cccgcccaaa      7020
     ccaggaaccg agaccgcagt caccaaatcc cgacgccgtc cccctcgagc tattcggtct      7080
     gatgccctta cccgaaggcg gatcgttgga cgaggacttc gaggagttac tccaaatcat      7140
     gggttcggac gtggacgtcg acgagttcct acgagagaac aacctgggac acaacggaga      7200
     accgtacacc gacccctggg aggaagcccc cgaaagttgg aacgtctata ccccggaacg      7260
     gaagctgccg gcggtcctaa taaaggaaat ccttgcgaga ggtaacaccg gcaaacgggc      7320
     tcgcttcacc atcgaccacc gcgggcaaaa ataccaaatc tcccgagcca aaagcggcca      7380
     tatccgtgtc acccttcacc acggaagaaa gggggggg                              7418
//
ID   Gypsy-5_DAzt-LTR repbase;    DNA;    INV; 1397 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1397
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 809-809 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1397 BP; 386 A; 430 C; 272 G; 309 T; 0 other;
     tgtaaagacc cgatggatct tcacaattta ctttacatct actctacact ttacatcgca        60
     actacaagtt cgacctgtat tccccgccac tggaggcacc ctctttttga tttataatta       120
     gcagtaaccc ctagtccata acacacaata attaatcacg tagctttaag tagcaataag       180
     gccgaacttg aaatatactc actaatgagg ccaccaacgc aaaaatgagt cgatattcta       240
     accgagtagg caaccccgct actatcgata aaaggaagaa aaagaggaga tcgataggag       300
     gagataaaag gacgggagag acgggctttt gctctctctc gcgaaaacca cgaagcaaca       360
     cgcatcatac cagagttata cccacgcaat ctaaccgaac gtcaagtgtc gcgactgcta       420
     aaaccgtaca acgtgccccc cactgcggtt cacgatccac gcgacatcgt agtgtgtaaa       480
     agacagaact ttcacgccgc tcatagtcta tggcgagacc atcacctcgg gtcgtagcat       540
     accgatcgga gtcgttctcg atttggtcca gtaacctgag taagttaagc cgtccacgtg       600
     gtgcagtcag ggccactagc tagggcttac tatcaataaa ggttctgaaa caataaggca       660
     cctcagcatt ataacgactt ttattcattc gtctatattt atccctctcc cgtatcccta       720
     atccagtaat ctcacgagtc gtcgcgacca cgcacgaccc cgtagaatcc cccagtagtt       780
     aatatctgtt gcgatcacgc acagacaatt cctcctagag ctcccgtagc ctcccgagtc       840
     atcgcgacca cgcatgactc cgtagaatcc tccagtagtt aatatctgtc gcgatcacgc       900
     acggacaatt ccccctaaga acccagtagt ctcacgagtc gtcgcgacca cgcacgaccc       960
     cgtagaatcc tccagtagtt aatatctgtt gcgatcacgc acagacaatt cctcctagag      1020
     tgcccgtagc ctcccgagtc atcgcgacta cgcacagccg attcctcgta ggaaacccgt      1080
     agcctcccga gtcatcgcga ccacgcacgt ctccggagtg taccttcccg cccctaacgc      1140
     ctgtcgcgat cacgcacagt caaccccggc tagaagtgcg gtaattgcac ggatcgtcac      1200
     gatcacgtac aaccaactcc cccttcacag aggcccgtta attccccgaa taaaggcgtg      1260
     gcctcgccac acgctagtac cccttcaacc cagatacagt cgctttcctt tcctaaggtc      1320
     cccacaacaa ctacaaattt cttgtagaga aaccctggac cagctgaact cccccagcct      1380
     gaaataggtt ccttaca                                                     1397
//
ID   Gypsy-5_DBi-I repbase;    DNA;    INV; 4815 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DBi_;
KW   Gypsy-5_DBi-LTR; Gypsy-5_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4815
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 829-829 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2252-2758] - Reverse transcriptase
CC   Positions [3821-4297] - Integrase core
CC   'TATT' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..1958
FT                 /product="Gypsy-5_DBi-I_2p"
FT                 /translation="MELNNASIEQLKRWLSVLKLSTTGTKKELILRLNKVP
FT                 KEVRGKVDEMAKQKGDEDGDKSKGNDSSDEIFEDGGGIFQKEGGGRSNGKD
FT                 GDKSNGKDGGIQSYDEEDGEKSKGEDGGIGNYSEEDGETNGEDGEASDEVA
FT                 GSILRIRGKRSNEKGGEQNEDGGRNDNYAEGDMHNQAGDQSRNAKSSERKA
FT                 VVENFNESIDVSLGMATQVLSEFSGESCARKWTTQLQNIATIYGIKGKFVK
FT                 MLMLSKIKGKAYEWLHADADRVLLPLDDLMAELISTFRGKSSKLEIRRKFE
FT                 GRKWKQSESFGSYVDDKIMLAQGINIDADEMLSCIIEGIPNQGLRNQAHIQ
FT                 CFVDVGHIKRAFADVSLPKLYGVGRPTTSTDPKDSKETRCFNCNAKGHWAY
FT                 ECRKSKREKGSCYACGEMGHFVAKCLKNKNKNEGENKYVRYVEINFVNDSN
FT                 TRLIAECLIDTGSPISFIKISKVPEDISKLPVLSSYYGLNKSYLKTYGKIL
FT                 CYVLKNLNKVHFNLVVVANESMSHDVILGRDFMDACNLNLNLDTLKMVTVE
FT                 NIENPSDVSDEKQIVSDDVSDEKQIVSDDVSDEKQIVSDDVSDEKQIIGDV
FT                 VSNVRNKNTIFSDVNYGTRDSRETNKEILVKSEMKKKL"
FT   CDS           1958..4684
FT                 /product="Gypsy-5_DBi-I_1p"
FT                 /translation="MNKNYIEPEINLVEKELFNINLTDESVEYKVGDNVNY
FT                 NVRCQFVRMVESCYVNKERPKEPEVRCEMKLRLEDSKPFSCSPRRLAYTEK
FT                 EKLQVILDEYLSEGIIRPSESEYASPIVLVKKKSGDLRLCVDYRKLNKTMV
FT                 KDNYPLPLIDDLLDTLVNKTIFSKLDLKHGYFHVFVDSESIKYTSFMTPLG
FT                 QFEFMRMPMGLKNAPAVFQRFINKIFADMIRDGKVVIYMDDIMIASKEMQE
FT                 HLSVLREVFDRLARNKLELRMDKCEFLQASVQYLGFLVTSKGIQANDKGIE
FT                 AVRDFPVPDKVHNVRSFLGLCSYFRRFIKDFSIIAKPLYELLKKDKEFVFE
FT                 EKELQCFEMLKKKLVEAPVLGLYYYKDEVELHTDASAQGFGAVLLQRKEDK
FT                 KLHPIFYFSKATTKDEAKYHSFELETLAIIYALRRFRIYVQGRRFRIVTDC
FT                 NSLTLTLNRIELNPRIARWALELLEYDFELVHKSGKLMQHVDALSRNTNIM
FT                 VVETNSFEDNLIICQAKDEKLKDVRKKLENEEDKMFEMRNGVIYRKSNNGK
FT                 LLFCVPEEMEEKILYKYHNELGHLGRDKVMDAILRTYWFSNMKEKVVRHIE
FT                 NCIRCVAYSPKSGKGEGLLHSIPKGNVPFEIIHIDHYGPVDNGRAKKHLFV
FT                 VIDGFTKYVRLYATKTTNTKEVIIALKDYFRSYSRPTCIVSDRGSCFTSED
FT                 FGKFMEECNIKHVKIATGSPQANGQVERINRIVGPMIAKLADPEEKMHWDT
FT                 VVEDVEFSLNNTKQRSIAQMPSKMLFGIEQKGKVIDELRQKLEELDNVSDV
FT                 RDLDKIRKDGSEAQRKLQKDNEQRYNEKRTKSSEYKVGDYIMVKNFDSSVG
FT                 VARKLIPKHKGPYVIDKVLRNDRYLIKDVEGFQLSRCPYQGVWSSQNIKHW
FT                 IGKRK"
XX
SQ   Sequence 4815 BP; 1812 A; 620 C; 1147 G; 1234 T; 2 other;
     aaatcagaag tgggccgatc acgagccaat taattacaaa aagaaataaa atggaattaa        60
     ataacgcttc gatcgaacaa ttaaaaaggt ggttgagtgt gttgaagcta tcaacaaccg       120
     gaacgaaaaa ggaattgatc ttacggttaa ataaagtacc aaaggaagtt cgtggaaaag       180
     ttgatgaaat ggcgaaacaa aaaggagatg aagacggcga taaaagtaag ggcaatgaca       240
     gcagcgacga aattttcgaa gacggcggcg gaattttcca gaaagaaggc ggcggcagaa       300
     gtaatggcaa agacggagac aaaagtaatg gcaaagacgg cggcattcag agctacgacg       360
     aagaagacgg cgaaaaaagt aaaggcgaag acggcggcat tgggaattac agcgaagaag       420
     acggcgaaac taacggcgaa gatggtgaag cgagtgacga agtggctggc agcattctca       480
     gaattagagg caaacggagc aacgaaaaag gcggcgaaca aaacgaagac ggtggaagga       540
     acgacaatta cgcagaaggc gacatgcaca accaggctgg agaccagtct agaaacgcaa       600
     aaagcagcga acgtaaagcg gtggtggaaa attttaacga gagcatcgac gtctcgttgg       660
     gcatggcaac acaggtgttg agtgagtttt ctggcgagtc gtgtgcccgc aaatggacta       720
     ctcaattgca aaatatcgcg accatttacg gaataaaagg aaaatttgta aagatgctaa       780
     tgctgagcaa aataaaggga aaagcttatg agtggctgca cgcagatgca gaccgcgtgt       840
     tgctaccgtt ggatgaccta atggcagagc tgatctcaac gtttagggga aaatcatcga       900
     agttggagat acgacgcaaa ttcgaagggc gcaaatggaa acaaagcgaa agtttcggga       960
     gctatgtcga cgataagata atgcttgctc agggcattaa tattgatgca gatgaaatgt      1020
     tgagctgcat catcgaaggt atccccaatc aagggctacg caatcaggcg catattcaat      1080
     gctttgtgga tgttgggcac ataaagaggg cgtttgcgga tgtaagcttg ccaaagctat      1140
     atggagttgg caggccgacg acatcaacgg atcccaagga cagcaaggag actcgttgtt      1200
     tcaattgcaa tgccaaaggg cattgggcgt atgagtgcag gaagtcgaag cgggagaaag      1260
     gatcatgcta tgcgtgcgga gagatgggac actttgttgc gaaatgcttg aaaaacaaaa      1320
     acaagaacga gggcgaaaac aaatatgtaa gatatgttga aattaatttt gttaacgatt      1380
     ctaataccag gttaattgca gaatgcctca tagatacagg aagcccaatt tcatttatta      1440
     aaatatccaa agtgccagaa gacatttcaa aattaccagt tttaagttca tattatggtt      1500
     taaacaaaag ttacctaaaa acttatggaa aaatactatg ttatgttttg aaaaatttaa      1560
     ataaagtaca ttttaattta gttgttgtgg caaatgaatc tatgagtcat gatgtaatct      1620
     tgggacgaga ttttatggat gcttgtaatc taaatttgaa ccttgacact ttgaaaatgg      1680
     ttacggttga gaatattgaa aatccttctg atgttagtga tgaaaagcag atagttagcg      1740
     atgatgttag tgatgaaaag cagatagtta gcgatgatgt tagtgatgaa aagcagatag      1800
     ttagcgacga tgttagtgat gaaaagcaaa taattggtga tgttgttagt aatgttagga      1860
     ataaaaatac aatttttagc gatgttaatt atggaactag ggacagcagg gaaacaaata      1920
     aagaaatttt agtaaaatca gagatgaaga agaagctatg aataaaaatt atattgagcc      1980
     ggaaataaat ctagtggaaa aggaattatt taatataaat ttaacggatg aaagtgtaga      2040
     atacaaagtt ggtgataatg tgaattataa tgttaggtgt cagtttgtta ggatggtaga      2100
     gagttgttat gtaaataaag aaaggccaaa ggaaccggag gttagatgcg aaatgaaatt      2160
     gagattagag gattcaaaac cattcagttg ttcgcccaga cgtttagctt acacagagaa      2220
     agaaaaatta caggtgatat tagacgaata cttaagtgaa ggaattataa ggccgagtga      2280
     atctgagtat gcatctccaa tagtgttagt taaaaagaag tcaggcgact tacgactatg      2340
     tgtagactac cgaaagctta acaagactat ggtgaaagat aattatccgt tacctttgat      2400
     tgacgattta ttagatacat tagtaaataa aacaatattt tcgaaattgg atttaaagca      2460
     tggctacttt catgtgtttg tggatagtga atcgataaaa tatacctcat ttatgacgcc      2520
     tttaggacaa tttgagttta tgcggatgcc aatggggcta aagaatgcac cagcggtgtt      2580
     tcaacgattt atcaataaga tttttgcaga catgataagg gatggtaagg tagttatata      2640
     catggacgat atcatgattg cgagtaaaga aatgcaagaa catttaagtg ttcttagaga      2700
     agtttttgat cgattagcaa ggaacaaact agaattaaga atggacaagt gtgagtttct      2760
     acaagcaagt gtacaatact taggattttt ggtaactagc aaaggaatac aggctaacga      2820
     caaaggaata gaagctgttm gagattttcc cgttccagac aaagtacaca atgttagaag      2880
     ctttctgggc ttgtgttcgt attttagaag gttcattaaa gatttttcga taatcgctaa      2940
     acctctatat gaattgttaa aaaaggataa agaatttgta tttgaagaaa aggaattgca      3000
     atgttttgaa atgcttaaga aaaagttagt ggaagctcca gtgttaggat tatattatta      3060
     caaggacgag gtagaattgc atacagacgc cagcgcacaa ggttttgggg cagttttgct      3120
     gcaaagaaaa gaggataaaa agcttcatcc tatattttat ttttcaaaag caacaacaaa      3180
     agacgaagca aagtatcata gttttgaact ggaaacgtta gcaataattt acgctcttag      3240
     aagatttaga atttatgtgc agggcagacg atttagaata gtcacagact gtaactcact      3300
     gacgttgacg ttaaatagaa ttgagttaaa cccccgtatt gcacggtggg cattagaatt      3360
     gctagagtat gactttgaat tagtccataa atcgggaaaa cttatgcaac acgttgacgc      3420
     tttaagtaga aatacaaaca taatggtggt tgaaacgaat agctttgaag ataatttaat      3480
     tatttgtcaa gcgaaagatg aaaaattaaa agatgttaga aaaaagttag aaaatgagga      3540
     agataaaatg tttgagatga ggaatggagt tatatataga aagtcgaata atggaaagct      3600
     gttattttgt gttccagaag aaatggagga aaagatatta tacaaatatc acaatgaatt      3660
     aggtcattta ggaagagata aagttatgga tgcaattctt aggacgtatt ggttttcgaa      3720
     tatgaaagag aaagtggtta gacatattga aaattgtata agatgtgtag catattcgcc      3780
     aaagtcaggg aaaggggaag gactgttgca cagtatacca aaaggaaatg tgccattcga      3840
     aattatacat attgatcatt atggaccggt tgataatgga agagcaaaga aacatctctt      3900
     tgtggttata gacggattta ctaaatatgt taggctatat gcaacaaaaa cgacgaacac      3960
     aaaggaagtt attatagcat tgaaagacta ctttaggtct tacagcaggc caacttgtat      4020
     agtttcggat aggggaagct gttttacgtc ggaagatttt ggaaaattta tggaagaatg      4080
     taatattaaa catgtcaaaa ttgcgactgg gtcacctcaa gccaatggac aagtagaaag      4140
     gattaataga attgtgggac caatgatagc taagttagca gatccagaag agaaaatgca      4200
     ttgggacaca gttgtggaag atgttgagtt ttcattgaac aacacgaagc aaagaagcat      4260
     agcacaaatg ccaagtaaaa tgttgtttgg aatcgagcag aaaggaaaag ttattgatga      4320
     attgagacaa aagttagaag aattagataa tgttagtgat gttagagatt tagacaaaat      4380
     tagaaaagat ggttcagaag cgcaaagaaa attacaaaaa gacaacgaac agagatataa      4440
     tgaaaaaaga acaaagagtt cggagtacaa agtaggagac tatatcatgg taaaaaattt      4500
     tgatagctca gtaggagtcg caagaaagct aatacctaaa cacaagggtc cttatgttat      4560
     agataaagtt ttgaggaatg atagatactt aataaaagat gttgaaggtt ttcaattatc      4620
     gcgttgccct tatcaaggtg tctggagtag ccaaaatatt aagcattgga ttggaaaacg      4680
     aaaataaagt tgtgaatata tctaagaatt tgtaaataca aaactaaatt atagaaacta      4740
     agataaatat aagacmaaaa tcaattgtaa attaacacaa gatcagggga tcttaaaatg      4800
     tcaggacggc cgaat                                                       4815
//
ID   Gypsy-5_DBi-LTR repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DBi_;
KW   Gypsy-5_DBi-I; Gypsy-5_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-318
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 830-830 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 318 BP; 84 A; 61 C; 71 G; 102 T; 0 other;
     tgtagcagga ttgctacgtc gtagtatgta tgtatgtgta tgttattgta ttccttctag        60
     atcattcgtg taagttctaa gaataagttg ttgttgttgt acgatgccgc tcactgttct       120
     ctaactctct ctctcaatct catcgctctc acactctctc agtgaatcgg gggttgatgc       180
     ggatcgtgag ctgagagcga gagcagttga acgccgaccg tgatcctgaa cagaccaaat       240
     taaattaaat aaaagaaaag actagaagtc atatttgtgt tggtgtttaa cttcagggga       300
     atacgttata cccctaca                                                     318
//
ID   Gypsy-5_DBp-I repbase;    DNA;    INV; 4569 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.05, Created)
DT   13-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DBp_;
KW   Gypsy-5_DBp-LTR; Gypsy-5_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4569
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 661-661 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3624-4085] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..4568
FT                 /product="Gypsy-5_DBp-I_1p"
FT                 /translation="MCIEISKFLQMNAELPIKPFLCESIDKALLRLEWEKW
FT                 LRAFKIYAESEEITACKQKRTKLLHLGGIQLQSVAYSLPDAVIDFDEEEQN
FT                 DVFQVLVDKLTAFFSPKQNSSFERHMFRSLIPSGDESFAKFVLRLRQQIKR
FT                 CDFGSTKADIEEICLKDKVIDAWASGDLKRKLLEKEHSLDEILEACQVDEE
FT                 IRKESAMMTKGTEEPVNRVATSKPKGNRRNFECERCGRTGHKDDCPTCPAR
FT                 QSKCNRCGRLGHFGRKCRTNLKRQNSQWRSTNPGETGSYTKKPKTEDCFKI
FT                 NCDEQEECLKCKVGGADISLIIDSGSRYNLICQDDWSTLKRNKATVFNVRP
FT                 NSQNQFKGYASDQILNVICVFEAPISVGKQAEMIASFFVIEKGQQSLLGRE
FT                 TAIKLDVLRLGLQINHIEEVSVFPKWKGDSVKLAINQDIKPVQQPMRRIPI
FT                 ALEGKVREKIQDALKRDIIEPVNGPSAWISPMVLVFKENGDIRLCLDMRRA
FT                 NQAILRENYPLPTFEAFMTQLRDARYFSRLDLKDAYHQLELHEQSRAITTF
FT                 ITPLGLFRYKRLMFGVNSAPEIFQRRLEQLLSGSSNVLNYIDDIIVFGKTE
FT                 DEHDEALKRVRGILKENNAVLNEKKCVYKASKLHFLGHILSNHGIEADPEK
FT                 INTIASFRPPKNKEETRSFLGLVTYVGKFIPELANKTDPLRRLLKKDEKFT
FT                 WGAPEQDAFDKLKSCLAKIPNLQYFDPKHKTQLIADASPVALGAVLLQFHG
FT                 DDEPKIISFASRSLTDVEKRYSQTEKESLSLVWAVEKFFYYLAGLEFELIT
FT                 DHKPLETIFKPSSKPPARIERWLLRLQAFKFIVKYKTGKENIADTFSRLCE
FT                 LNPGYCYDMKGEHSILHVIENATPSSMTITEIAEKSINDEEIVDAMSCLQD
FT                 ESWNASSSNSLFPFRHELSLIGSIMMRGTRIVIPKALRQAILTLAHEGHPG
FT                 ESAMKRRLRSKVWWPQIDRDAEKFVKSCRDCIMVSQALNPTAMKRTTFPEG
FT                 PWIFVATDLLGPLPNNEHILVFIDYYSRYMEYKFLKSISSTSLISTMKEIF
FT                 TRLGYPKKLKTDNGRQYVSAEFKEYCKQCGIEQVTSPPYWPQANGEVENMN
FT                 RSLVKRLKIAYTNKKNFKEEIQSFVMMYNVTPHGTTGSAPTELMFNRVIRD
FT                 KIPGVQDLMGEYSDSVERDRDLVNKQKGKEYADKRRGAKEINVEVGDKVFL
FT                 KNVIFPHKLTPNFDTTEYVVKGREGDIIRITGGGKTLTRNVSHVKKIPQTQ
FT                 PPAETEDHSPPSRSTGDVLQPLNFRTLDESKQMESTSETTSAPGEGLKLKL
FT                 INKGG"
XX
SQ   Sequence 4569 BP; 1605 A; 860 C; 1024 G; 1078 T; 2 other;
     ttggcgacga ggtaaataat acttaataat gaaactaaaa ggaaataaaa tataaatagg        60
     aaaaaaaaat aaacgcagaa aaaaaaakat tcgcaatttt caattgcact atccttttgg       120
     cacgccgttc gtcatgtaga catagaactg gcgttgacac accggcatac atacatacat       180
     acgtgtatac gtgtatgcat gttgcacacg atacatgtat gtacatgtgc atgcaaattg       240
     aaataaataa aacaagaaaa tgtgcgaaag cgagagatta tctgacaaag atcagaggca       300
     gttaggcccg aactaagctg acaaaggtca gagacagtaa ttataataat aataataaaa       360
     aaaaagaaaa ggagttatct gaaaaggagt tttcagaggc agttagccat acatgtatgt       420
     acatacatat gtactaagct gacaaaggtc agggacagta agactgacaa aagtcagagg       480
     aaaaaaaaag aaagaaagaa aaaaaacatg catatgttta gtaaagtagg tacagttaga       540
     tacgaactaa ctggagtcag tgacagaatg aagcgaaact cagtttcatt aaataaatta       600
     tatatatata tatacatatg tgtatagaga tatccaaatt tttacagatg aacgcggaat       660
     tacccattaa accattcttg tgcgaaagca ttgacaaagc actgcttcgt ttggaatggg       720
     agaaatggct gagagcattt aagatctatg ctgaatcgga ggagatcact gcgtgcaagc       780
     aaaagaggac caaactactc catttaggtg gaatacagct gcaatcagta gcgtattcat       840
     taccagatgc tgtaatcgat ttcgacgaag aggaacaaaa tgatgtattt caggtgttgg       900
     tggacaaatt gacagcgttc ttctcaccca aacaaaactc gtcgttcgaa agacacatgt       960
     tcaggagttt gattccatct ggcgacgaaa gttttgccaa atttgttttg cgcctaagac      1020
     aacaaattaa gaggtgcgat tttggatcaa cgaaagctga catcgaagag atttgtctta      1080
     aagataaggt aatcgacgct tgggcatcag gagatttaaa aaggaaatta ttagaaaaag      1140
     aacattcact ggatgaaata ctcgaggcat gccaagttga cgaagaaata agaaaagaat      1200
     cagcaatgat gacaaagggt acagaggagc cggtaaacag agtcgcgaca agtaaaccga      1260
     aaggaaatag acggaacttc gaatgcgaga gatgtggacg tactggccac aaagatgact      1320
     gccctacttg tccagctcga cagtcgaaat gtaatcggtg cggtcggctg ggccattttg      1380
     gacggaagtg caggacgaat ttaaaaagac agaactccca atggagatct actaacccag      1440
     gtgaaacggg ctcctacact aaaaagccga aaacggagga ttgtttcaaa ataaattgtg      1500
     atgagcaaga agaatgcctc aaatgcaaag tcgggggggc agacatatct ctgatcattg      1560
     attcggggtc tcgctataat ctcatctgcc aagacgactg gtccactcta aaaaggaata      1620
     aagccacagt gttcaatgtt cgtcctaact cacagaacca gttcaaagga tatgcttcgg      1680
     accaaatttt aaatgtaatt tgcgtatttg aggcaccaat ttctgtcggt aaacaggctg      1740
     aaatgattgc ctcctttttc gtcattgaaa aaggacaaca gtcattgctg ggacgagaaa      1800
     ctgcaattaa gttggatgtg ctacggctgg gtctgcagat aaatcatatt gaggaggtat      1860
     cggtttttcc gaagtggaag ggcgacagtg tcaagttggc aataaatcag gacataaaac      1920
     cagtacaaca gcccatgcga aggataccaa ttgcattaga aggaaaggtg cgcgaaaaga      1980
     ttcaggatgc tctaaagcgt gatattattg aacctgtaaa tggcccaagt gcctggatct      2040
     caccaatggt tttagttttc aaagaaaatg gagacattcg attatgcctg gatatgcggc      2100
     gagcaaatca agccatttta agggaaaact accctttacc gacgtttgaa gcgttcatga      2160
     ctcaactcag ggatgctaga tacttctcca ggttagatct caaggatgca taccaccaac      2220
     tcgagctaca tgaacaaagc cgagcaataa caacgtttat aactccgtta ggattatttc      2280
     gttacaagcg attgatgttt ggagtcaact cggcaccaga gattttccaa aggaggcttg      2340
     agcaattatt gtcgggttcc tcaaatgtcc taaattacat agatgacatc atcgtttttg      2400
     gaaaaactga ggacgagcac gatgaagcat tgaaaagagt tcggggcatt ctaaaagaaa      2460
     acaacgcagt attaaacgaa aagaaatgtg tctacaaagc ttctaaatta cattttttgg      2520
     gtcacatttt atcgaatcat ggcatcgagg ccgatccgga aaaaattaac accatcgcat      2580
     cttttcgacc tccaaagaac aaggaggaga ctcgcagttt tttgggcctt gtaacatatg      2640
     taggaaaatt cattccagag ttagcaaata aaactgaccc attgcgacga ctgctcaaaa      2700
     aggacgagaa gttcacctgg ggtgctccgg aacaggatgc gtttgataaa ctgaaatcgt      2760
     gtctggcgaa aattcctaac ttgcagtatt tcgatccaaa gcacaaaaca cagttaattg      2820
     cagacgccag tccggttgca ttgggagctg tattgctgca attccatgga gacgatgaac      2880
     cgaaaataat atcttttgct agtcgaagcc tgacagatgt cgaaaagcgc tattcgcaga      2940
     ccgagaagga gagcttatca ttagtttggg cagtggaaaa attcttctat tatctagctg      3000
     gattagagtt cgaactaata accgatcata aaccactaga aaccattttt aaaccatctt      3060
     cgaagcctcc agcgagaatc gaaagatggc tcctccgcct ccaagctttc aaattcattg      3120
     ttaaatataa aaccggaaag gagaatattg cggatacttt ttctcgtcta tgcgaattaa      3180
     acccaggata ttgttacgac atgaaaggcg aacatagcat tctccacgta atcgaaaacg      3240
     cgactccgtc gtccatgacg atcactgaaa ttgcagagaa aagcattaac gacgaggaga      3300
     ttgtagatgc aatgtcgtgc ctgcaggacg aatcgtggaa cgcttcatcg tcaaacagtc      3360
     tgtttccgtt cagacatgag ctctcactta ttggatccat catgatgcga ggaacccgca      3420
     tagttattcc aaaagcgtta agacaggcga ttctaacgtt ggcacacgaa ggtcatccgg      3480
     gagagtcagc gatgaagcga cgattaaggt ccaaggtatg gtggccgcaa atagatcgag      3540
     acgcggagaa attcgtcaaa tcatgcagag attgtataat ggtatcgcaa gcattaaacc      3600
     ccactgctat gaaacgaacc acatttccag aaggaccgtg gatttttgtg gctacagacc      3660
     ttttgggacc gttacctaac aacgagcaca tcctagtttt catcgactac tattcaagat      3720
     acatggaata taaatttcta aaatcgatct catcaacgtc attgatcagt accatgaaag      3780
     aaattttcac cagattaggc taccctaaaa agctgaaaac tgacaacgga agacaatatg      3840
     tgagtgcaga atttaaggaa tattgtaagc aatgcggaat cgagcaagta acatcgccac      3900
     cttattggcc tcaagccaat ggggaagtkg agaatatgaa tcgatcgtta gtaaaaaggc      3960
     taaaaattgc atacaccaac aagaaaaatt tcaaggaaga aatacaatca tttgttatga      4020
     tgtataatgt gactccccat ggaaccacag ggtctgcacc aacggaatta atgttcaatc      4080
     gagtaataag ggacaagatt ccgggggtgc aggatttaat gggagaatac agtgactcag      4140
     tagaaagaga ccgtgattta gtaaacaaac agaaaggcaa agaatatgcc gacaagagga      4200
     gaggagccaa agaaattaat gttgaagtgg gagacaaggt ttttcttaaa aacgtaatct      4260
     ttccccacaa gcttacacca aattttgaca ccaccgaata cgtcgtaaaa ggaagagagg      4320
     gagacattat aagaataaca ggcgggggaa aaactttaac gaggaatgtg agccatgtga      4380
     aaaagattcc acaaacacaa cctccagctg agaccgaaga tcactctcca ccctcccgaa      4440
     gcacaggtga cgttctgcag cctttaaatt tcaggacact ggatgaatca aaacagatgg      4500
     aatcgacgtc tgagacgaca tcggcacccg gagaaggatt gaagctgaag ctcatcaata      4560
     agggaggga                                                              4569
//
ID   Gypsy-5_DBp-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.05, Created)
DT   13-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DBp_;
KW   Gypsy-5_DBp-I; Gypsy-5_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-204
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 662-662 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 204 BP; 59 A; 40 C; 40 G; 65 T; 0 other;
     tgtgggagtc tgtacctccg gtgatctctg agagcgagag agcgacccat tatgactctc        60
     aataaggcca tactttgact cttgtcaatt cttgtaatct aatcttattc ttacagccgg       120
     agtgaacaga ccaccgcgca taaatatata tttgaatata attaacaata gtttctatta       180
     ttggtatggt taccgggtaa taca                                              204
//
ID   Gypsy-5_DEl-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DEl_;
KW   Gypsy-5_DEl-LTR; Gypsy-5_DEl-I.
XX
NM   Gypsy-5_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5986
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 518-518 (2012).
XX
RN   [2]
RP   1-5986
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..1303
FT                 /product="Gypsy-5_DEl-I_1p"
FT                 /translation="MGKNWIYLLKKEDFPKVAAKLGIILEGKSDDMRKALS
FT                 EYVTKTQNDPGMAEIWAELEELYDKPSSSGKLQVPDAEQLIASLGVESMKE
FT                 AGRSRGPSQERRTEQQRPSAPDYAKVAKQVREWSFKFDGTEKPLEFLEQVE
FT                 WSANTYGLNLNLIPRAMPELLQGKALKWFISNNKHWRTWGEFSDSFQTYFL
FT                 PRGFFTKLADQVKQRKQGFRESFKDYMVDMQTMMRPLGYSPKETLEQIKEN
FT                 CTPDLRISLRTYKIDDLESLMVLADEYEELEKEREAFIQENKFSRSKTTAP
FT                 QVTCRRCEEEGGHQAPIDGPRQWTPNTYNHQSTLWRPPNTNQRPPSAAPRA
FT                 HRSQTHIVNPHEACRRCGGHGHWARGCQNQRLLFCWTCGKVGVRSVECCQR
FT                 SGNGLRSQPQRGEQGSQGVVSPN"
FT   CDS           1159..4443
FT                 /product="Gypsy-5_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKPEAAFLLDLRQGGGEECRVLPKIGKWPAIPATER
FT                 RAGVARCCLSKLTGDLIEEEQQLSAAVQIGRTSHKATIDTGATASFISEEL
FT                 ADTLAAYGKITRTRRQVRLADGRCSGINTQLEVEIEFGNKRLPMSLLILPG
FT                 VVDSLVLGWNFLTGVGAEIRCAGHTVVIPERRRHNGWLEEKLSVAVVQTNS
FT                 EECDVEKFLEQELAEFRTMSGTSNIAEHRITMKDDKPIKQRYYPKNPKVQG
FT                 EINAKVDELLEKGCIEHSRSPYSSPIVMVKKKTGQWRLCVDFRQINAKSIK
FT                 DAYPMPRINYILDQLREARYISSLDLKDGYWQIPLEENSRQFTAFTVPGKG
FT                 LFQWKVMPFGLHSASATFQRALDQVIGPEMSPHAFAYQDDIIVIGRTLEEH
FT                 RRNLREVFRRLKQANLRINPEKCNFFKSELLYLGHRVTDQGIGTDPEKVAA
FT                 IAELEPPTTIRELRQYLGVASWYRRFVPDFARIVKPLNDLLRKGTKWTWTP
FT                 EHQQAFEEVKARLVADPVLACPDFDKPFVLQTDASDYGIGAVLTQETESGE
FT                 KVISYSSRTLNGAEKNYSTSEKECLAIVWAIRKLKPYLEGYHFKVVTDHMA
FT                 LKWLNSIESPSGRIARWALELQQYDFEISYRKGQLNVVADALSRQPLPEAF
FT                 RLAKETPEDAQGTCSWIKDMCEKINKQPQKFPDYIMEGGALYRHIPHRAGS
FT                 EDVAAWKLCVPRGLRETVLKENHDSPAAGHVGSRKTIARLAARYYWPGMHR
FT                 DARAHVRKCETCLRYKPNQMQAAGKMLTQIPEEPWATVCADFVGPLPRSKH
FT                 GNQMLLVLIDRFSKWTELVPLRAATAESLQKAFRERVIARFGVPKVVITDN
FT                 GVQFASRAFKKFLSEMGIKQQFTAPYTPQENPTERANRTVKTMIAQFAGQN
FT                 QRNWDEKWPEIMLAVNSSTSESTGYSPCFLTQAREPRLPSALYDRETIGTG
FT                 KQTETPEDKANKMKEIFEIVRRNMEKAAQDQARHYNLRRRQWNPTIGDTVW
FT                 AKEHHLSKAAEGFAAKLAPRYDGPYTVIDFVSPVICKLRHKDTQKERTVHV
FT                 SELKQQTQELGTDKQGQHKQATTSGGADYSVGHKPESI"
XX
SQ   Sequence 5986 BP; 1931 A; 1367 C; 1674 G; 1014 T; 0 other;
     tctggcgccc aacgtgattg tcctgacagt gaaaatacag caataaacag aaatggggaa        60
     aaattggatc tatctcctca agaaagagga tttcccaaag gtggcagcca agcttggcat       120
     tatcctggag ggcaagtcgg acgacatgcg aaaggccctt tcagagtatg ttacgaagac       180
     acaaaacgac ccaggaatgg cggaaatttg ggctgagctg gaggagttgt acgacaaacc       240
     aagctcgagc ggcaagttac aagtcccaga cgccgaacag ctcatagcca gcctgggcgt       300
     tgagagcatg aaggaggcag gaagatccag gggcccaagc caagaaagaa gaacagaaca       360
     gcaaaggccc agcgcaccag actatgcaaa agtcgcgaag caagtcaggg aatggtcgtt       420
     caagtttgac ggcacggaga aaccactgga gtttctggaa caagtggaat ggtcagcaaa       480
     cacatacggt ttgaacctga acctcattcc ccgagccatg cctgaattgc tgcaaggcaa       540
     ggccctaaaa tggttcatat caaacaataa acactggagg acatggggag agttcagcga       600
     cagttttcaa acgtatttcc tgccaagggg tttcttcaca aagctcgcag atcaggtcaa       660
     acaaaggaaa cagggcttta gagagtcgtt caaggactat atggttgaca tgcagaccat       720
     gatgagacca cttggctact ccccaaagga aacactcgag cagataaagg aaaactgcac       780
     gcctgacctg aggatttccc tgaggacata taagatagac gatctagagt ctctaatggt       840
     gctggctgac gagtatgaag aactcgagaa agagcgagaa gcatttattc aagaaaacaa       900
     attctcgcga agcaaaacaa cagcaccaca agtcacgtgt agaaggtgcg aagaagaagg       960
     cggacaccaa gcacctattg acggtccaag acaatggact ccaaacacct acaaccacca      1020
     gagcacgtta tggaggccac ccaataccaa tcagagacca cccagcgcag ctccaagagc      1080
     ccacaggtca cagacacaca tcgtgaaccc acacgaagct tgtagacggt gtggcggtca      1140
     cggacattgg gcaagaggat gccaaaacca gaggctgctt ttctgctgga cttgcggcaa      1200
     ggtgggggtg aggagtgtag agtgctgcca aagatcggga aatggcctgc gatcccagcc      1260
     acagagaggc gagcaggggt cgcaaggtgt tgtctctcca aactaactgg cgatttaatc      1320
     gaagaagagc agcagttatc cgcagcggta cagattggca gaacctcaca caaagccaca      1380
     atcgacaccg gagcaacagc gagctttata agcgaggagc tggcggatac actggctgct      1440
     tatggaaaga ttacaaggac gagaaggcaa gttaggttgg cagatggcag gtgcagcggg      1500
     ataaacacgc agctcgaggt ggaaatcgaa ttcggcaata agcgattgcc catgagcctg      1560
     ttgatcttac caggagtggt agactcgctg gtgctgggat ggaatttcct cacaggagtc      1620
     ggcgccgaaa taaggtgtgc cggacataca gtggtgatcc cagaaagaag aaggcacaac      1680
     gggtggttag aggaaaaatt gtccgtggca gtggtgcaaa ccaactcgga ggaatgcgac      1740
     gttgaaaaat tcctagagca ggagctcgcg gagtttcgaa caatgagtgg aacatccaac      1800
     atagccgaac accgaatcac catgaaggac gacaaaccaa tcaaacagag atactacccg      1860
     aaaaatccaa aggttcaagg ggaaatcaat gcgaaagtcg acgagttgct ggagaagggg      1920
     tgcatagaac actcgagaag cccgtacagc tccccgatag tcatggtgaa gaaaaagaca      1980
     ggtcagtgga ggctttgtgt cgactttaga cagatcaatg ccaaatccat caaagatgct      2040
     tatccgatgc caaggataaa ttacatattg gaccagttga gggaggcaag atacataagc      2100
     agtctggatt tgaaagacgg atactggcaa attcctctgg aagaaaatag caggcaattc      2160
     acggcgttca cagtgccagg aaaggggctt ttccagtgga aagtaatgcc atttgggtta      2220
     cactccgcct cggcgacttt ccagagagca ctggatcagg ttattggacc ggagatgtca      2280
     ccacacgcgt ttgcatacca agacgacatc atcgtgatcg gacggacact ggaagaacac      2340
     agaaggaacc tgagggaagt gttccgacgc cttaaacagg ccaacctgag gataaatccc      2400
     gaaaaatgta atttcttcaa aagcgaactg ctttacctgg gacaccgcgt tacggaccaa      2460
     ggaatcggca ccgatcccga aaaagtagca gccatagccg agctggaacc acccacaacc      2520
     atccgggagt tgcgccaata cttgggcgta gcatcgtggt acaggcgatt cgtgcccgac      2580
     tttgcgcgaa tagtaaaacc actaaacgat ctattgcgga aaggcacgaa atggacatgg      2640
     actccagagc accagcaggc attcgaggag gtgaaggcaa ggctagtggc cgatcctgtg      2700
     ctggcatgcc cggatttcga taaaccattc gtactgcaga cggacgcaag cgattatggt      2760
     ataggggcag tcctgacgca ggaaacggaa agcggcgaaa aggtcatttc atattcaagc      2820
     cggaccctga atggcgcgga aaagaactac tcaaccagcg aaaaggaatg cctggcaatc      2880
     gtgtgggcaa tccggaagct caaaccatac ttggaaggat accacttcaa ggtggtgacg      2940
     gaccatatgg cgcttaaatg gttgaacagc atcgaaagtc cctcaggaag aatagcgagg      3000
     tgggccctgg agctgcagca gtatgatttt gaaatatcat acaggaaggg gcagcttaac      3060
     gtggtcgctg atgcactgtc aagacagcct ctaccagaag cctttaggct agctaaagaa      3120
     actccggagg acgcgcaggg aacatgcagt tggatcaagg atatgtgtga gaagattaac      3180
     aaacagccac agaagtttcc ggactacatc atggagggag gcgcattgta caggcatatc      3240
     ccgcacagag caggcagcga agacgtggca gcatggaagc tctgtgtccc acgggggctg      3300
     agggaaacag tcctgaagga gaatcacgac tcaccagctg ctggacacgt gggaagtcgg      3360
     aaaacgatcg caaggctggc ggctcgatat tactggccag gaatgcatag ggacgcccga      3420
     gcacacgtac ggaaatgcga gacatgcctc aggtacaagc ccaaccagat gcaggcagcc      3480
     gggaaaatgc tgacgcaaat acccgaagaa ccatgggcaa cggtatgtgc agactttgtc      3540
     ggaccattgc ccaggtcgaa gcatggcaac cagatgctgc tagttctgat agataggttc      3600
     tcaaagtgga cagaattggt gccactgcga gcagcaacgg cagaatcact tcaaaaggcg      3660
     ttccgagaaa gagtcatcgc taggttcgga gtcccgaagg tggtaataac ggacaatgga      3720
     gttcagtttg ccagccgtgc attcaaaaaa ttcctcagcg aaatgggcat taagcaacaa      3780
     ttcacggcac catatacacc gcaggagaat ccgacggaaa gagcaaaccg gacagttaaa      3840
     accatgatag cgcagtttgc gggacagaac cagaggaatt gggacgagaa gtggccggag      3900
     attatgctag cggtaaattc aagtacgtcg gagtcaacag ggtactcccc gtgtttcctc      3960
     acgcaggctc gagagcctcg actgcccagc gccctgtacg acagggaaac catcggcacg      4020
     ggaaagcaga cggaaacgcc tgaagataag gccaataaga tgaaggagat cttcgaaatt      4080
     gtgcgccgga acatggagaa ggctgctcag gaccaagcca ggcattacaa tctacgaagg      4140
     aggcaatgga atccaacgat aggggacaca gtctgggcga aggagcacca tctgtcaaag      4200
     gcagccgagg gtttcgcggc aaagctagcg ccgagatacg acggaccgta cacggtaata      4260
     gacttcgtct caccagtcat ttgtaaactc cgccacaagg atacgcaaaa agaacgaaca      4320
     gtccacgtca gtgagcttaa acaacaaaca caagaactcg gtacagacaa gcaaggacaa      4380
     cacaagcagg caacaacatc aggtggtgcg gactatagcg tcgggcataa gccagagtct      4440
     atatagaccg caggataaca cgagcatgca acgacaaaaa gtacagacta tatcgtcggg      4500
     cataagccag agtctatata gaccgcagga taacacgagc atgcaacgac aaaacgtgcg      4560
     gactatatcg tcgggcataa gccagagtct atatagaccg caggataaca cgagcatgca      4620
     acgacaaaac gtgcggacta tatcgtcggg cataagccag agtctatata gaacgcagat      4680
     aaaaaggagg cacagtgacc cagacaacga ggcaaacaga ttctgcgtcg ggcatgaagc      4740
     cagagtcatc cattaatacg ccgcgaagaa taaggtgatg cacagtacaa gaaaccgaaa      4800
     agaccgcagg ccaacaacaa tccgtagcgt cggcagactc tgtacggatc gaggaagacc      4860
     acgaccagat ctttttcatt cccgaggaaa gaggggagac ggtacagctc gagagcttta      4920
     ccgtagcatg ccaagccgga aaaacactaa aataacgcgc acacacataa acggccacag      4980
     ttaattagtt agcatgccaa gccggaaaaa cacgaatatg acgcgcacac acataaacgg      5040
     tcacaaaaaa aaaaaaaaag ggaagataca cacacatgaa aggcactacg tatgatccgg      5100
     caatctgaaa tgagaaatat acatgaaaac cggggtcgca gggaaacaaa ccacttgcca      5160
     actaaatgca gaacgacgca agaaagcgat gagccgagca gggtcattga caccggcccc      5220
     aagggcagga aaggtcaact ctgcaatcct gggccaagct ttggggaaaa agaaaataag      5280
     taaacatgaa atagaaagga aattgcgctt accatagcat tgtgcggagt cactataaac      5340
     aagggatggg ggcgtttcga ttcatggtca ccgattggcc ctacacgata gtgtcgatcg      5400
     gtgggcacaa aatactggaa atatcggcac aaggagtcac gctgtggaaa atcgatacat      5460
     cgagtggcaa cgccacgttg ggtcacggaa tcgataacaa ctggagaccg atcggttggg      5520
     cggagagtga ccgtacagcg gagagtcaca cgggagaata tcgatatccc cgataacaac      5580
     tggagaccga tcggcacgac gtagagtggc catccgacgg agaagacata tcgggatcaa      5640
     aatcatcggg ggaaagtcgg gcgggaattc aaaaatcatc gggggaaacg tctgggcggg      5700
     aattcaaaag tctacggggg aaacgtctgg gcgggaattt aaagtctacg ggggaaacgt      5760
     ctgggcggga aattcaaaat ctggaaggag gatcggcgct gtggaactcc ataaggagct      5820
     gtgagcgtcg tgggaaccat ctggaagagc gagtcgactg gaagactaca ggcgaacgag      5880
     gacaagtacg aggaaagaca cgtcgaggga aggatgtcag aatgtggagt ataccaaggc      5940
     agagagaaca gcgagtctct ttttcattcc cgaagtaagg ggagaa                     5986
//
ID   Gypsy-5_DEl-LTR repbase;    DNA;    INV; 1573 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   30-JUN-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DEl_;
KW   Gypsy-5_DEl-LTR; Gypsy-5_DEl-I.
XX
NM   Gypsy-5_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1573
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 519-519 (2012).
XX
RN   [2]
RP   1-1573
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1573 BP; 436 A; 388 C; 480 G; 269 T; 0 other;
     tgtgaggagt tgaataactc cccacaagtt aagaagcaag cagagtaagc gcatgcaagc        60
     agtggcctac cagttaccag ttacgcggcg aattcgcccg tagtaacggt agtgcggaga       120
     gagagagtgg tgaactgagc accagacaaa gccaaggaga gtccgagagg gacagcaata       180
     cgagagagcg gcgaagggcc gtgggcagaa ggaagtaacg ggacggcacc ggactttgga       240
     ccctgatatt ggtgccgggc gcagagggcg aaaggtcgaa cggtaaaacc gtggactttg       300
     gaccaggagg caaggagacg ccgataacta gcggtaaatg gaggcctata taaaccggcc       360
     gagcgcagga agctggatca gtcgatttct atcaagtcaa caagtaacag tcatcaagtg       420
     aacaagtaac cagtgaaaca ttgtgaagga gcaagtaaag ccgtgcggag tcatcaagga       480
     aacaagatcg ctacgtcgag acgttcggga cttagagcta aagtctccga attgagacac       540
     aggtagctga ggtccttacg gcatcacacg gctaagtcca ggcgctttgt tacaacttct       600
     gtcgcgattt gagcttggca tcccacccgg cgtgtccgac aaagtgaaca aatagagtcc       660
     ttcgacgaag aaccgtgggc tcagaagcaa agtgtccaga actagctacc tgcctacaag       720
     gactgcattg gcgaactccg gcgtatgcct gatcgtcctg caggaactgt acaaggtcct       780
     ggtgcgacta gcccggaagg acgcgcgttt gttcagctgg tgtctcgaaa ggcgtatgcg       840
     ttgagagcac agcggtccac cgctagagtc ccagaacggc agcttaccga gtcgccaaca       900
     aggagcggag ctggtcgaga tagctggagg cggacaagga caacgaggac cccaggacga       960
     cgaaaacgag cgtcgagcga gcagcccaca cttcgaattc ttaagcctgc ggcagagagg      1020
     gtagggtgga agcgttcgtc tagaacctgg cgtttgaccc agggactgcg ttggcggctt      1080
     ccggcgtacg cctgaaccgt caggtagaaa ctgagccgac gtccggtgcg accggccggg      1140
     acagagcaag ggacaggagg ctgcggctgc gaaaggcgta cgccttgaga gcacagtgcc      1200
     tgttcaccct agtctgggaa cggtgacgca tccctagtcc ctgtaaaccc gccgagccaa      1260
     gggtggcaga agacatcgca agcaaaaccg gcgaggaaga caccacttcg cagccggcac      1320
     gatccagaga ggcgttcaac gtgggaagga gacgacggca ggacgtgatt ctacataacc      1380
     agtacaccac cccggccgag ggtcaagtcg gcgaataaaa gatcactgca tactcccaat      1440
     ctttctgtgt gttttcactg gtcaaaaggg cggtcacgta tatataaatt tggtgggacg      1500
     aacacttaca tcttctgagc tagccgcacg acattcgtag cgagcagata ataaagaaaa      1560
     tcagttcgtt aca                                                         1573
//
ID   Gypsy-5_DEr-LTR repbase;    DNA;    INV; 1827 BP.
XX
AC   .
XX
DT   23-SEP-2011 (Rel. 17.03, Created)
DT   23-SEP-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila erecta genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DEr-LTR.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1827
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 373-373 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 90% identical to Gypsy5-LTR_Dya.
XX
SQ   Sequence 1827 BP; 599 A; 346 C; 327 G; 555 T; 0 other;
     tgtagtgacc aacttaactt tacactgcaa taactcttca agacaccctc gccctaaatt        60
     atagcagctt ttgtgtaaaa caaaaagcga gagaattgtc ttagaccaat cagaacagaa       120
     tatgatcgta cgattataca gttagggaaa gaaaagctgt aacagcgacc accagcatgc       180
     agcttcccca gagcttagat cattatcgga taaatcttcg tggcgaacgc tcacacattt       240
     ttgacgctgc ccatttaaac ttcacataca cgtggaaata taatttagtt atatatatat       300
     ccaatctcat aaaacaagag ttggtatatt tcaataaatt tccgtgttcg atttgcgtgt       360
     gaaagtggca acgagattcg accccaaggc gtaaggaaga ccaggcctat atataagagc       420
     atttgattgc tctacagccg actacccccc cgtctcgtcg acccccgcat cagctcatgg       480
     tttaaacccc gtcgctccaa gaagaggcca cgaggcgaca taaccttcag caacaagtta       540
     cgcaaccggc cacctgccga atgataaccg gccaaatgta ttggaaggct agagctcatc       600
     cagattattc agctatgcag aagtttagac gaccggagca gatttaatta catttgaaca       660
     tcatcatcgt cacgcagtga agatcatctc ctatgaccaa cggaggtcca actttgtgat       720
     ttcgtcttat cgcagcgcag cgtagcagcc agcggtttcc taaggtctta tcgctgcagt       780
     actgcagtta tatttcgtgt tttgttttga ttcttgattt tcttttgtat tgcgatttat       840
     aatgaattaa atactcgcag attgacggaa cttttggcat ttgaatagga atttaaatta       900
     gaacctttaa agtttgacct acagctcgac aatgtcaacg tgaacttggg cccaacttta       960
     cgcacatcat ggagtggata tttaaggtcg tgagtactac aacaacaatg ataaaaatct      1020
     tattatgaat tacctatatt aaaattctaa caaaatgcca ctcgaacgtc taattaaaat      1080
     aatatctgca tttgactaaa gattatgtaa ctatatttgc taattttata ttcaattact      1140
     tatatatatt tgctttatac tttactttta tatactttat tttacccact gaatataaac      1200
     aaaaatgaag agttagagaa tgactaggat aattatgcgt agataaaaat attgttagtt      1260
     tgtaaaagag atttaatgaa accgtttatt aaactgaatt tatataaatg gaattatgat      1320
     tgaagatata ttgaaaaata atgaattgtg aataaataga tttaatggtt tgtcgagtac      1380
     ttatgttgaa cactttctta aatatgtggt agagttattt tgaacttggc caagggacaa      1440
     tgtaaatatt ttaagtagca ttgtcatggt agggagggta aagacttagg gaatcattaa      1500
     catccaaaat tcccaatact tatcagaatc tgtagcttat cttcacacgt gtcggcgtgt      1560
     atcattagta tcaatataaa gccatttctt ttgttaatcg gtagtccagt tttgaatatt      1620
     gtttatgagt aagacgcact tattaaaatg tagtagcgtt tcgtactatc ctaagctaaa      1680
     agaaccccga cctacggcga gctagacccg agcatagcaa gagtgcgcat ccctagcgaa      1740
     ggaagtacaa ggtcctcttt attagtaatt atcacccact attaaaagac ccactagtta      1800
     aaaatctatc gaactacgta cactaca                                          1827
//
ID   Gypsy-5_Deu-I repbase;    DNA;    INV; 4000 BP.
XX
AC   AFPQ01004554;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_Deu_;
KW   Gypsy-5_Deu-LTR; Gypsy-5_Deu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4000
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004554; Positions    7621    3622.
XX
CC   Positions [1699-2073] - Reverse transcriptase
CC   Positions [3237-3563] - Integrase core
CC   'TTTA' target site duplication
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..1678
FT                 /product="Gypsy-5_Deu-I_2p"
FT                 /translation="MMRTNKKKKNTAQNNNSTTSKKNPEKLNEDVQNSTFQ
FT                 LNRKSIGEKTFNIGNQSSEKETTIAELKPLHTQSQLDESFPLKSDEVDQEF
FT                 ADKMSNIDFEDSHTFVNNGDLAKLIKMIAEKCEIGENKYGVSVESFAKVVP
FT                 NFDGVSIPIREWLVNFDENAEVYELNEKQKYVNARNKMSGTAKLFLETVAV
FT                 SNYEDLCEVLIDEFDKQLSSAEIHKILRNRKKRASENFHEYVLQMRKVAAL
FT                 GHIEDQSIISYIVDGLEVRDDLKFPLYSSTSFKELRTRFELAESVVKSNSF
FT                 KRKPNFDRAEKQENPFNRKQQHCNCGSADHKIAECKGDLKCFKCNGVGHIA
FT                 KHCPDVKSDGLITTHTFSVVPDANLKVDVLVGYDFLEKFTITSRGYTFAAT
FT                 QMQNNEEPSQSNVFNVVSSTEDFDINVNPKHATAVKEIIYNYKPKSNPEEC
FT                 PIKLSIIPKDSIVFRESPSRLSIPEREFVRKQVEEWLSSGIIRESCSDVAS
FT                 KVVLAKRKEGTYRLCVDYRKLNTLVLKDRFPFPS"
FT   CDS           2434..3564
FT                 /product="Gypsy-5_Deu-I_1p"
FT                 /translation="MYWSKKTTPQEEKLHSYFLEVKAAYLATKKMRHYLMG
FT                 IEFDLITDCAAFKMTTTKKDVPREVVQCLMHLQDFSFKIEHRAGTRMKHVD
FT                 SLSRFPVMIVTSEVQSQILRAQKKDEHLSAVAEILKEKPYAQYTMKNNIIY
FT                 KQVAGEELLAIPKCMEKEIIRTAHNFGHMGSEKTKHAIQQEYFIPHLDKRV
FT                 TEVIANCIECITHNKKLGKQEDYLHCIDKGDKPLSTLHVDHLGSLDITAKK
FT                 YKYIFAVIDGFSKYTWIYPTKSTDAHEVIKHLSSWVAIFGNLTVSSATRGL
FT                 LSRLNLLRSSVLTERLNTSKIPQGSPEEMGRLKESTGLSFQYWPKCLPPSH
FT                 RSGINTLLRCNGRSTRTFTLQQNLLHLKFCLELR"
XX
SQ   Sequence 4000 BP; 1402 A; 750 C; 879 G; 969 T; 0 other;
     cgggggctca accgatccga gcagccagtt aaataaacta tttgcaacaa ttaactcttt        60
     gtgaaattgt ttaagaagtt gtgaaattat gatgagaaca aataaaaaga agaaaaatac       120
     tgcgcaaaac aataattcta cgacatcaaa gaagaatcca gaaaaactta acgaagatgt       180
     gcaaaacagc acatttcaat taaatagaaa gagcattggc gaaaaaacat tcaatatagg       240
     caatcaaagt agtgaaaaag agacaactat tgcagagctc aagccgttac atacacaatc       300
     tcaacttgac gaaagttttc cattaaaatc ggacgaagtt gaccaagaat ttgcagacaa       360
     aatgagcaat atagactttg aagattcaca cacatttgtg aacaacgggg acttggccaa       420
     actaataaaa atgattgcag aaaaatgtga aattggtgaa aataaatatg gtgtttcggt       480
     ggaaagcttt gcgaaagtgg ttcctaattt tgacggtgtc tcgatcccca ttagggaatg       540
     gttggtgaat tttgacgaaa atgcagaagt ttacgaatta aacgagaagc aaaaatacgt       600
     caacgccaga aacaaaatga gtggaacagc taaattgttc ctcgaaacgg ttgcagtatc       660
     aaactatgaa gatttgtgtg aagttttaat tgacgaattc gacaaacagt tgagtagtgc       720
     ggaaattcac aaaattctaa gaaaccgtaa aaaacgtgcg tcggaaaatt tccatgaata       780
     tgttctccag atgcgaaagg ttgcagcact gggtcatatc gaggatcagt cgataataag       840
     ctatatcgta gatggcttag aggtgcgtga tgacttaaaa tttccactgt atagttcgac       900
     gtcatttaag gagctcagaa ctcggtttga gttggcagag tcggttgtta aaagcaattc       960
     gtttaaacgt aagccgaatt tcgatcgcgc tgaaaaacag gaaaatccat ttaaccgaaa      1020
     gcaacagcat tgcaactgtg ggtccgctga ccataagata gctgagtgta agggcgacct      1080
     aaaatgcttc aagtgcaacg gtgtgggcca tattgccaaa cattgtccag acgtaaagtc      1140
     tgatggactt ataactacgc acacgttttc agttgttccg gacgcaaacc ttaaagttga      1200
     cgtattggtc ggatacgatt tcctagagaa attcactata actagcaggg gttatacctt      1260
     tgcggcgaca cagatgcaaa ataatgaaga accctcccag tcaaatgtat tcaacgtggt      1320
     aagctctacc gaagattttg atataaacgt aaatcccaaa catgcaactg ctgtgaaaga      1380
     aattatatac aactacaagc cgaaaagtaa ccctgaagaa tgcccaataa aactaagtat      1440
     cataccaaag gacagcattg tcttccgtga aagtccaagt cgcttgtcga tccctgagcg      1500
     agaatttgtt aggaaacaag tagaggaatg gctaagcagt ggtattattc gagaatcgtg      1560
     ttcggacgta gcaagcaagg tagttctggc caaaaggaaa gaaggaacgt acagattatg      1620
     cgtagactat cgcaaattaa acactcttgt tttgaaagat agattcccgt tcccatcgta      1680
     gaggaggtct tagagaagat gcaagcagcc aaatttttta cagtaatgga cctaagaaac      1740
     ggttttttcc atgttgcagt tgacgagcaa tgccgaaaat acacggcatt tgttacaaag      1800
     gaaggacttt acgaatttaa cagagctcct ttcggattct gtaactcacc ggccgtcttc      1860
     gttcgatatg ttaactatat cttccagaag ttaataaatg atggcataat ggagatatac      1920
     gtagatgaca tagttgtgtt tggtgattcg gcggagcaat gccttaaaaa catgcagatc      1980
     gtcttaaagc agggtgaaaa gtttggcttg gaaatcaaat ggtcaaaatg ccaattctta      2040
     aaggagaaga taagcttttt gggacacgaa atagaaaacg gacatgtttg gccaggccag      2100
     gaaaaaataa aagctgtgca aaattttcca gtacccaaaa atataagagg agtacaggca      2160
     tttcttggac tgacggggta tttccgaaaa tttatccgag agtacgcatt aatggcaaga      2220
     ccactcactg aactcctaaa gaaagacgca gaatttaaaa tcgatagttt gcagattcga      2280
     gctgtagaaa acctgaaggc gtcttttaac aagcgagccc gtacctaaaa atttttcaaa      2340
     cagaatgcaa agactcagct gcacgtagac gcgtcgaagg atggttttgg ggcaacactt      2400
     ttccagcagc atgacaacaa gtgacaccct gttatgtact ggagcaagaa gacaacgccg      2460
     caggaggaaa aattacacag ctacttctta gaagtgaaag ccgcatattt agcaacaaaa      2520
     aagatgaggc attatcttat ggggatcgaa ttcgatctca tcactgattg tgctgccttt      2580
     aagatgacaa caacaaagaa agacgtccct cgtgaagtag tacagtgcct tatgcacctt      2640
     caagattttt cctttaaaat agaacatcgt gctggcacca gaatgaagca tgtagacagt      2700
     cttagtcgat tcccagtcat gatcgtcacg tcagaagtcc agtcgcaaat tctaagggcg      2760
     cagaaaaaag atgaacacct atcagcggta gcagagatcc taaaggagaa gccttatgcg      2820
     caatacacaa tgaaaaataa cataatttac aaacaggttg ccggagaaga gttgcttgct      2880
     attccaaagt gtatggaaaa agaaattatt cgaactgctc ataactttgg tcacatggga      2940
     tcagagaaaa caaagcatgc aattcaacag gagtacttca tacctcattt agacaaaaga      3000
     gtgacggaag ttattgcaaa ttgcatcgag tgtataaccc acaataaaaa actcggaaaa      3060
     caagaagatt acttgcattg catagacaag ggagataagc cgttatcaac cctccacgtc      3120
     gatcatctag gatccttaga tataacggca aagaagtata agtacatatt cgcagttatt      3180
     gatggctttt caaaatatac ctggatatat cccactaaat cgactgacgc tcatgaagtc      3240
     ataaaacatc tcagttcatg ggtagccatt tttggaaacc tcaccgtatc atcagcgaca      3300
     aggggactgc tttcacgtct aaacctttta aggagttctg tgctgacgga aagattgaac      3360
     acatcgaaaa taccacaggg atccccagag gaaatgggca gattgaaaga gtcaacaggg      3420
     ttatcatttc agtattggcc aaaatgtcta ccgccgagcc atcgaagtgg tatcaataca      3480
     cttctcaggt gcaacgggcg atcaacgcgc acgttcactc ttcaacaaaa tttactccat      3540
     ttgaaatttt gtttggagtt aagatgagaa atgagtcaaa tgcagatttg gtcaacatcc      3600
     ttcaggagga actactgtca ggcgttcaag acgagcgcaa ccgaataaga acagaagcta      3660
     gaaaccagat cgaaaaagac gcaagaaacg tacaagcgga actttgacaa aaggaggaaa      3720
     ggccaccacg gatatcaatt aggtgacttt gtcgctatta gagtaactca attcgtcaac      3780
     gggaaaaagc tgtcaaacaa gtttatagga ccttacgaag tcattaacgt aaagcggaac      3840
     ggtcgatatg acgttcaaaa atctgcagag ttccaaggcc caaatcagac gtcaactgct      3900
     gctgattcca tgaaattatg gcgttacttt ggttgtagcg aagacgaaga cgacgcggac      3960
     ggaggatcat ctgggtcaga tgatgatcag gatggccgag                            4000
//
ID   Gypsy-5_Deu-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   AFPQ01004554;
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   12-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_Deu_;
KW   Gypsy-5_Deu-I; Gypsy-5_Deu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-328
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Direct Submission to RU (03-DEC-2011).
XX
DR   Genome; AFPQ01004554; Positions    3621    3294.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 328 BP; 112 A; 67 C; 61 G; 88 T; 0 other;
     tgtaaggtgg catgggtaca atcacctcac aagttggcac acccatcctt gacacacacc        60
     acccatcatt cccacccttt gctaatatgc taaatttgga cagatgagaa gtttgcagcg       120
     ccgaagaaga taagagaagg agagtcgaga agtagtcaaa aaatcaagtc gaagaagcca       180
     gtcgcagaag tcgtaataaa gttgtcaaaa gtagtcgcga atttctgtcg gtctttggaa       240
     atctgtatta acattcattt acctgttcgg ctatacactt aatcgtattc atattaaata       300
     aacctataat cttataataa atcttaca                                          328
//
ID   Gypsy-5_DFi-I repbase;    DNA;    INV; 4589 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DFi_;
KW   Gypsy-5_DFi-LTR; Gypsy-5_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4589
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 897-897 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2085-2591] - Reverse transcriptase
CC   Positions [3651-4127] - Integrase core
CC   'GAAG' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..1719
FT                 /product="Gypsy-5_DFi-I_1p"
FT                 /translation="MDIVGDNYAMAVLKKWLGELGLSTKGTKAELLVRLNA
FT                 VPAAERGNAPRVDNLEDDHLVAETRRVIQSQQAEMFKGTEALANLYKEIEA
FT                 AKNVLEQLRMHGRNQELEGDDDTSCQDVEDDAQGNASCEIQRNVAAEKNFG
FT                 DWASMAFSLAKEILMEYDGNTPVRNWIAQFDNITQLHKLNDMQRQLLCIAK
FT                 LKGKALQWLHADPVRVVKPINQVLDQLKEAFGGKLPKIELRRKFAGRMWIS
FT                 DENFGVYFEDKCMLARDLDMDDDELLDGIIEGIPHENLRIQAKLQCFDNPA
FT                 KMRRAFADVALPRQSGLLMKSEAAKGRDIKENSRCFNCNSKGHWARDCSKP
FT                 KRKPGSCYGCGDEGHLMAQCPKRKVKTEDSGVNNFVRSLVIYFSNSNNESI
FT                 ISECLIDSGSPVSFIKQKCIPTNIKLHTHEVLYFGLNESQLNVFGKIFCHI
FT                 FKNSNKINFDLKVVPNESMRWNIVLGRDFMELYGIKLYLSELDVNGNERTE
FT                 SLLDGKDNIRPNLEQEGINEVELVEAADQLLENSEMNMDCENVGNKLVDKS
FT                 LAENCLLDRKLLEINC"
XX
SQ   Sequence 4589 BP; 1611 A; 592 C; 1100 G; 1232 T; 54 other;
     aattcagaag tgggatcaag aacagaaaaa atggatatag ttggtgataa ttatgcaatg        60
     gcggtattaa aaaaatggct tggcgaattg ggtttgtcca caaaaggcac aaaagctgag       120
     ttgctggtgc gtcttaatgc tgtaccagca gcagaacgtg gaaatgcacc aagagtggac       180
     aatttggagg atgatcatct ggtggcggag acaagacgcg taattcaatc gcaacaagct       240
     gaaatgttta aaggaacaga agcgttggca aatttgtaca aagaaatcga ggccgctaag       300
     aatgttctgg aacaattacg catgcatgga cgaaaccaag agttagaggg agacgacgat       360
     acatcatgcc aagacgtaga agatgatgct caaggaaatg caagttgtga aattcagcga       420
     aatgtggcag ctgaaaaaaa tttcggtgac tgggcatcca tggcgttttc attggccaaa       480
     gagattttaa tggagtacga tggaaatacg ccagtgcgaa attggattgc tcagtttgac       540
     aatattacac aattgcacaa gttgaacgac atgcagcgac aattattatg tattgcaaag       600
     cttaaaggaa aagcgttgca gtggctgcat gcagatccgg tacgtgtggt gaagcctata       660
     aaccaagttt tggatcaact gaaggaggcg tttggtggaa aacttccgaa aattgagcta       720
     cgtcggaaat ttgctggacg aatgtggata tcggacgaaa atttcggcgt atactttgag       780
     gacaagtgca tgttggctcg agatttggat atggacgacg atgagttatt agatggcatt       840
     atcgagggaa taccacatga aaatctacgc atccaggcaa aactacagtg ctttgataat       900
     ccggcgaaga tgcggcgagc atttgcagac gttgccttac ctaggcagag tggtttgctg       960
     atgaagtcgg aagcagcgaa gggcagagat ataaaagaaa attctcgttg cttcaattgc      1020
     aactccaagg gacattgggc acgagattgc agtaagccaa agaggaagcc gggatcttgc      1080
     tacggatgtg gtgacgaagg gcatttaatg gcgcagtgcc cgaagaggaa ggtgaagacg      1140
     gaggacagcg gcgtaaacaa ttttgtaagg tcattagtaa tttattttag taatagtaat      1200
     aacgaatcta taatttcaga atgcctcata gactcgggca gccctgtttc gtttattaaa      1260
     caaaaatgta ttccaacaaa tattaaatta cacacacatg aagtgttata ttttggatta      1320
     aatgaaagcc aattaaatgt gttcggaaaa atattttgtc acattttcaa gaacagtaat      1380
     aaaattaatt ttgatttaaa agtggtgcct aacgagtcta tgagatggaa tattgtttta      1440
     ggtagagatt ttatggaact ttatggtata aaattatatt taagtgaact tgatgtgaat      1500
     ggtaatgagc gtactgaaag cctattagat ggtaaagaca acataaggcc aaacttggag      1560
     caggaaggaa taaatgaagt ggagttagtg gaagcagcag atcaattgtt agaaaatagt      1620
     gaaatgaata tggattgtga aaatgtagga aacaaattgg ttgataaatc gttagcagaa      1680
     aattgtttgt tagataggaa attgttagag ataaattgtt agacagtaaa ttgttagata      1740
     atagattgtt agataataga ttgttagcta gtaaattgtt agatgagaag tcaaaagaat      1800
     tagttagagg agtgttagaa gaaaattttc aaagtagcat gatgcaaatt aatgtagtgg      1860
     attctgaaag agaatataag attgggacac aagtggatta tgcattaaga gcaaaattta      1920
     taaaaatgtt agaaagcact tatataaatg caaagaagca agcaaatccc aacattaggg      1980
     gcgagatgaa aattatttta gaaaaagaaa aaccatttag ttgttcacct agaagactat      2040
     catatgcgga aaaagaaaaa ctacaactta tgttagatga atacctaaaa gagggtatta      2100
     tacaacccag tagttcagaa tatgcctcag caattgtttt agtgaagaag aaatcggggg      2160
     atcttagatt gtgcgtcgat tttagacggc ttaataagat tatggtcaga gataattatc      2220
     cgttgccttt aatagacgac ctgttagata aactagtggg aaaaaaaata tttacgaaac      2280
     tagatttaaa gaatgggtac tttcacgtgt ttgtggataa ggactcggtw aaatacactt      2340
     cgtttgtgac gccattgggc caattcgagt ttttaagaat gccgatgggg cttaaaacag      2400
     ccccacaagt atttcaaaga tttgttaata ccgtatttgc ggacatgatt agagaaaatg      2460
     aggttatagt ttatatggac gacataatgg tcgcaagcag agatatagat gaacattttg      2520
     aaatattaga ggaagttttg attmgattgg cggaaaataa actagaacta aggwtggata      2580
     aatgcgagtt tatgcaggat wgtgttaaat atttggggtt tcagatatct aaaggttgta      2640
     ttcgagccga tgataagggc ttagaagcta ttaagaattt tcckatgccc gataaagttc      2700
     aakcagtgca gagttttcta ggattatgtt cttattttcg taggtttatt aaagactttt      2760
     ctatcatagc aaaacctctg tatgatttac ttagaaagga tagagtattt aaktttggtg      2820
     aaaaggagct aaattgtttt gagtgtttga aagaaaaatt gttagaagcg ccagttttgt      2880
     caatttatga tcatagagat gacattgaat tgcattgtga tgccagtgcs ttggggtttg      2940
     gagcggtact tcttcagaag aaggcagacg aaaaatttca tcctattttt atttttcgaa      3000
     gcgcacatca gaaacagaag caaagtacca cagctttgag ttagaaactt tagcgataat      3060
     ctatgcttta agaagattca gaatatattt acagggaaag cgttttaaaa ttgttactga      3120
     ttgtaactca ttagctttga ctttaaataa aattgattta aatccaagga tagcaaggtg      3180
     ggcgcttgag ctacaagaat ttgattacga aatagttcat agagctggaa gcagaatgca      3240
     acacgtagat gcttgtcgag atgttgtaat acaattatga taacagaagc aatagtttga      3300
     aacaaattta gtaatttgtc agacgaagga tatgaaaata caaaaattag aaaattgtta      3360
     gaaaaaggtg agctgaaatt gtttgaaatg agaaatgggg tagtatatag gaaaacaatg      3420
     atggcaggat attattttat gtaccagcgg ctatggagga tcatgttatg tataagtatc      3480
     atgatgaatt aggacatatt ggtagggata aagtgattag tgcaatgatg aagacatact      3540
     ggtttccgaa catgaaggtc aaatcttcag gacatatwsa aaattgttta aagtgtatwg      3600
     cktwttcmcc saawgcgggc aaaggatgtg ggswwttgca cagcatcccs aaaggtaaca      3660
     agccwttcga wattattcat attgaccatt atggaccagt ggataagagt agatcaaaga      3720
     aacatatatt agcwgttgta gatgsgtkca cgaaatttkt waggctgtat gcgaccaaaa      3780
     caacgaatws taaagaagcw gtwagtgcat tagsagacta ttttcgatca tacagcagac      3840
     cgagttgcgt ggtgtcagat agaggtagtg gctttacttc gggggaattc gaaaagtttt      3900
     tgggtgacgc aaatataaag cacattaaag tkgccacggg atcgcctcaa gctaatggac      3960
     aggtggagcg ggttaacaga agtttaggtc ctatgttaag caaacttact gaggcgaaag      4020
     aggggcagca ttgggataag gtcatcgaam gaattgaata cwcawtgaat aacacaatwc      4080
     atmgtagcac aaaacagagg cctagtgaaa tkttgtttgg twtammwcag agaggggaag      4140
     twwgtgatga actaaggsaa aggctagaag aggawaatwg tgtagawgta aatkktggga      4200
     gagmkttgga agakattaga aaggaagcag aacaaaatca ggtattagca cagtcaaaaa      4260
     atgaggaata ctataatagc aaaagaaaag atccaaatga attcagagca ggagactatg      4320
     ttgtggtaaa aaattttgat agctcggcag gagtagcgag aaaactgtta ccaaaaagta      4380
     aaggccctta tgtcattgat aaggtactga agaacgacag gtatttgatc aaagacatcg      4440
     atggctttca gttagctcga aatccttacc aaggcgtgtg gagtgcgcaa aatattagac      4500
     attggttaag aaaaacaaat tcatctattg atgtacgaga taatgttaac aggagataga      4560
     gggctatctc aaaatcagga tggccgagt                                        4589
//
ID   Gypsy-5_DFi-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DFi_;
KW   Gypsy-5_DFi-I; Gypsy-5_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-217
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 898-898 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 217 BP; 87 A; 25 C; 45 G; 60 T; 0 other;
     tgtagcaggc tggtagtatt aagagttacc agatgtaacg ggtgggtagt acttattaag        60
     agttaccata tgattgtgat tgaataagtt atcgataaga taccatcctt ggtataccga       120
     cttttgagat tgacgaagaa gagaacacat gtgtaaaagc taaaaagtta agaattaaaa       180
     taaagaatac tacagaatta aaataaagac tactaca                                217
//
ID   Gypsy-5_DGri-I repbase;    DNA;    INV; 6841 BP.
XX
AC   .
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   23-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DGri_;
KW   Gypsy-5_DGri-LTR; Gypsy-5_DGri-I.
XX
NM   Gypsy-5_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-6841
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
RN   [2]
RP   1-6841
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   [2]: ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           801..2315
FT                 /product="Gypsy-5_DGri-I_1p"
FT                 /translation="MQSNELSESLANLKLGAASTSSQRNTQSGNTVYTSQS
FT                 LKDTIVSLVKETLQGGDIIRQAINTEGNDCLNDIPFTSPRLGEEQEKVPEI
FT                 TRLIRDFSGDRTTFGSWKKNVERIMTIYNGQEETYKYYLITLSIRNKIIGE
FT                 ADAVLESYNTPMNWKAISKCLTEHYADKRDLKTLEYQMFYLTQGRLSVQEF
FT                 YQMVYHQLSLILNQISVQEDAPEVIRALTNNYRGKALDTFVRGLNGDLPRL
FT                 LAIKEPRDLSHALHLCNLVENQEHRNAFLPKPRQQIPPLPPRNHIPLHKLP
FT                 QNNNSVQWRNFNPNLYHTPKPNMNHQMVQQHKQYPQPFRGQYTLPPQSFNP
FT                 RQGYQAPPRPFFQKPEPKPVPMEIDNSIRTRNVNYMNKPRTNDFVGKHPSN
FT                 APSGQPPKIQRQFHISTGQSEGGDEQPNPYDMKDEEQIYLEDAEPEGAHAL
FT                 PMRKKWNVLWMPTNNGRXLRHSFFRLNSSSLPYFXCITRNGNTXNFLIDTG
FT                 SNQNYINQV"
FT   CDS           join(2219..3733,3660..5333)
FT                 /product="Gypsy-5_DGri-I_2p"
FT                 /translation="FLSAXFPXHNEERQHIXFLNRYRLKPKLHQPSLVPSP
FT                 RPNQNAFNAMSVGGQTKISHHTFLTLFGQRNRPIQFFLLPTLKTFHGILGN
FT                 DTLKQLNAVIDVKNETLTIDGNYRIKIRQLETQAVNNIKVRTEHMTNKQKH
FT                 FIDHVTKTRSTLFAEPDEKLTYTTRVLGEIRTTSDSPVYSKHYQYPTSLRG
FT                 EVEKQIDQLLRDGIIRPSRSPYNAPVWVVPKKSDASGEKKFRIVIDYRKLN
FT                 SVTISDRYPIPEIGEIIAQLGENKYFSVLDLKSGFHQIPLMARDIEKTAFA
FT                 VNGGKYEFTRLPFGLKNSPSIFQRALDDILRDHVGKICYVYIDDIIVFSKS
FT                 EDEHINHLNTVFTTLDDANMKIQIDKCEFFKTEVDFLGFTISADGIKTNCE
FT                 KVRAIKNFPTPKSLKDLRSFLGLSSYYRRFIRDYAKLAKPLTTLLRGENGR
FT                 LSKNLSHKAEVTLDNNAIKAFDKIKNTLSSNDVVLAYPQRIPLDYRCIKFR
FT                 HRSSPRARRRTHKEFHLTTDASNFAIGAVLEQEGRPITYISRTLSKTEENY
FT                 ATNEKEMLAIVWALQNLRMYLYGTSRVIIFTDHQPLTFALSSKNHNGKLKR
FT                 WKSYIEEYNHELRYKPGTSNVVADALSRNPPTPEINNTTTSTVQSDDSSSH
FT                 NLIPVMEVPINVFKNQLFLLTSETESYEFQLPFPTHHRHIVERPDYSEDDL
FT                 IDILKKRLDPKIVNGLFTTENIMAKIQNLYPYHFASYKVRYTQKQVQDVTC
FT                 ESEQLEIIAKEHTRAHRNAIENKIQILNNFFFPSLKKKIEKITKACETCKE
FT                 SKYDRHPQKGELQPTPIPTYPGQIIHIDLYTTERTIVLTAVDKFSKYAQIK
FT                 ILNSKAAEDIKHPLREVMIAFGMPKLVVMDNERALNSASIKFLIENQLKSK
FT                 IYTTPPYSSTSNGQVERFHSTLTEIMRCVKKDDGITNFEDLIFKSTQLYNQ
FT                 SIHSTVNAKPIDIFFGTRITNDPQELEKNRNKVTDKLKNKQANDLEYHNNK
FT                 KKAIKQYKKGDTVYCKIDKRLGSKLTPKYKKEIVEENRNTTIKTQGGRVIH
FT                 KNNLKT"
FT   CDS           join(5490..6401,6275..6829)
FT                 /product="Gypsy-5_DGri-I_3p"
FT                 /translation="MAFGNLSNELNEINKTHPLFPLLTFEFAKVESDLKTL
FT                 KPTQRKARAVNALGTVWKWLAGTPDHYDYEILVSKTDEQVENNNKQLIINK
FT                 ILSKRMNELTENTNKIVKETIDNKNFQSEIATLLKYKIQIFKEELNNLIYA
FT                 IHWAKTNTINSIILSKIETEKIANLLEEKGTFFINPEELLEFAKIKIATNG
FT                 KKILYIINIPILSNEICTTLLXVPIKKHNKINKLKFXNIINCNQKIFGVKE
FT                 NCENHNDKSICKKTKLVDLSNDTCVTRILKNKKPIVNLXIXNMYPTTKNCS
FT                 LEQYCSTISKEKRHLCNTNSKKQKADCKFIXXQHVPDHEELFTGTILLNDF
FT                 KGEIKIDEETTELRGTFLIQFENSTVRIGEDLYLSKVMTSVEATPPLLQII
FT                 DGKSEAEEVLSLQMLKEININNTKELKTLRNSSTTTTIVNFGLSTTLFIIL
FT                 TIIVTCWIKQRSGTREINRQEDNPPXQSQTIETRFYIASEDVRI"
XX
SQ   Sequence 6841 BP; 2727 A; 1480 C; 1130 G; 1494 T; 10 other;
     ggcgcccgag cagggaccgg tacggaagta aaagttatag tgcgctagtg aaagtgtttt        60
     aactactgcg caaatacgaa cataactccg cgaaacagga cagtgtctaa aagtgcaagt       120
     tctatcagaa gcgcctcaag tagccgcaga tacgaacaag acaggttgat cagaagcgcc       180
     tcaagcagcc gcagatctaa acccaaaaaa gtttcaaaaa tacattcgta ccggtgccac       240
     aataacaccg ccgacaaacc ctgtagtgtc cgtccgcagg gtaccgtgag tgaagtatcc       300
     ggaggaaccc aagtcaccca gctcgacttg aaatcgtcgt gggacaaaaa ggagcaattc       360
     taaaggatca tcgcgggaga ttcgccggaa tgctgatcat attgtaagca tagtgattaa       420
     gaaaaatttt aacgattaag aaaaaataga aaaactaaaa taaaaaaaaa aaaaataata       480
     ataataataa taataataat aataattata actatagaaa aaataattac gaagaaaacc       540
     aagaaagaat aacgacatac aaattaagat ccaaaaagaa aaaaacataa attaagaaag       600
     caaaagaagt ttttaaacaa agaatattga caatttttac gaatcaaagc aaccatagat       660
     taagtaacaa gttttcgaaa aatcattcac aactaaataa ctttccaaaa atatcaccaa       720
     tataaaaatt caaaacaatt tttaaaaaaa agtggtccga atactaattc accgtaattc       780
     gttaaagaca acatcacaag atgcagtcaa acgaattgtc cgaatcccta gccaatttga       840
     agctgggagc agccagtacc agctcccaga gaaataccca atcaggcaac acagtttata       900
     caagccaaag cctgaaagat actatcgtat cactggtaaa agaaactctc cagggtggcg       960
     acataataag gcaagcaatc aataccgaag gtaacgattg tcttaacgat atcccattca      1020
     ccagtccgag attaggggaa gagcaggaaa aggtgcccga aataacgcgg ttgattagag      1080
     atttttccgg agaccgaacc acattcggtt cttggaagaa aaacgtagaa agaataatga      1140
     ccatttataa tggtcaagaa gaaacctaca aatactactt aataactctg tcaatccgaa      1200
     ataaaataat aggagaagcc gacgctgtgc tcgaatccta taacactcct atgaactgga      1260
     aagcaatttc caagtgcctt acagaacatt acgctgataa aagagactta aaaactctcg      1320
     aataccaaat gttctactta actcagggac gtctgtctgt tcaagaattc taccagatgg      1380
     tataccacca attatccctc atccttaacc aaataagcgt acaagaagat gcaccagagg      1440
     taattagagc tctgacgaat aattatcgag gtaaagcctt agatacgttc gtgagaggtc      1500
     taaatggaga tctccctaga ctcttagcaa tcaaagagcc aagggacctg agccatgcct      1560
     tgcatctgtg taacttggtg gagaaccaag aacatagaaa tgccttctta cccaaaccaa      1620
     gacaacaaat accacctcta ccgcccagaa atcatattcc gctacataaa ttgccccaaa      1680
     acaataactc cgtacaatgg aggaatttca acccaaacct atatcacacc cctaaaccga      1740
     atatgaatca ccagatggtc caacaacata aacaataccc tcaaccattc cgtggtcaat      1800
     atacattgcc gccacaatct ttcaacccta gacagggata ccaagcgccc ccgcgcccct      1860
     ttttccaaaa accagagcca aaacctgtgc caatggagat agataactcc attagaacca      1920
     gaaacgttaa ttacatgaac aagccaagga ccaatgattt cgttggcaaa caccccagca      1980
     acgcacccag cggtcaacct cccaaaattc aacgacagtt ccatatctca accggacaat      2040
     cagaaggagg agatgaacaa ccaaaccctt acgatatgaa ggacgaggaa caaatttatc      2100
     tcgaagatgc cgaaccggaa ggagcccacg ccctaccgat gaggaagaag tggaacgtac      2160
     tatggatgcc aaccaacaac ggtcgawgcc tccgacattc attttttaga ttaaatagtt      2220
     cctctctgcc statttccak tgcataacga ggaacggcaa cacattwaat ttcttaatag      2280
     atacaggctc aaaccaaaat tacatcaacc aagtctagtt ccaagtccga gaccgaacca      2340
     aaatgcattt aatgcaatgt ccgttggtgg acaaacaaaa atatcccacc acactttcct      2400
     tactttattt ggtcaaagaa atagaccaat tcaatttttc ttattaccga cattaaaaac      2460
     cttccatggt atcctaggta acgatacctt gaaacagctg aacgctgtca ttgacgtcaa      2520
     gaacgaaaca ttaactattg acggaaacta taggattaaa ataagacaac tagaaacaca      2580
     ggcagtgaat aacataaaag tacggacaga gcacatgacg aacaaacaaa aacatttcat      2640
     agatcacgtc actaagaccc gatcaacact gtttgcagaa ccagacgaga aactgaccta      2700
     cacaaccaga gtgttaggcg aaataagaac cacatcagat tctccagtat atagcaagca      2760
     ctaccaatac cctacttcgt taagaggaga ggtcgaaaaa cagatagacc agctgctgcg      2820
     agacggcata ataagacctt cacggtcacc gtacaacgcc cccgtgtggg tagttccaaa      2880
     aaagagcgac gcctcaggcg aaaaaaagtt tcgaatagtc atcgactata ggaaacttaa      2940
     ctctgtaaca atttcggatc gatacccgat ccctgagatt ggagaaatca tcgcacaatt      3000
     gggcgagaat aagtattttt ccgtactaga tttgaagagt ggctttcacc aaatccctct      3060
     catggcaaga gacatagaaa aaactgcatt cgcggttaat ggcggaaaat atgaattcac      3120
     cagacttccg ttcggactaa aaaattcgcc atcaatattt caacgagcat tagacgatat      3180
     cttaagggat catgtcggaa aaatttgcta cgtttacatc gacgatatca ttgtctttag      3240
     caagtcggaa gacgaacata tcaatcatct aaatacggtc ttcacgacct tagatgatgc      3300
     aaacatgaaa attcaaatcg acaaatgcga atttttcaag accgaagtcg atttcctagg      3360
     tttcactatt tctgcagatg gaattaaaac caattgcgaa aaagtaagag ctatcaaaaa      3420
     ttttccaact cccaaaagcc tcaaagactt acgttctttc ttgggtttat caagctatta      3480
     cagaagattc attcgggatt acgccaagtt ggcaaagccc ctcacaaccc tcctaagagg      3540
     agaaaacggt agactttcaa agaatctctc ccacaaagcg gaagtaacac ttgacaataa      3600
     tgcaattaaa gcatttgaca agattaaaaa cacgctcagc tcaaacgacg tggtactagc      3660
     gtacccacaa agaattccac ttgactaccg atgcatcaaa tttcgccatc ggagcagtcc      3720
     tagagcaaga aggtagaccc attacctaca tatcgcgcac actctcgaaa acagaagaaa      3780
     actacgcaac taacgagaaa gaaatgttag ctattgtgtg ggcacttcag aatctgcgca      3840
     tgtacctcta cggtacatca agggtgataa tctttacaga ccatcaacct ctaaccttcg      3900
     cactgagtag caaaaatcat aacggaaaac taaaaagatg gaaaagttac atagaagagt      3960
     acaaccatga actaagatat aagccaggaa cttctaacgt tgttgcagac gctctatcca      4020
     gaaatccccc aacgccagaa attaacaaca caacaacatc aactgtacaa agtgatgaca      4080
     gttcatcaca caaccttatt ccagtaatgg aagtcccaat taacgttttt aaaaatcaac      4140
     ttttcttact aacatcagaa acggaatcat acgaattcca actacctttt cccacacacc      4200
     acagacacat cgttgaaaga ccagactact cagaagacga cttaatagac atcttgaaaa      4260
     aacggctcga cccaaaaatt gtcaatggat tgttcacgac ggaaaatata atggcaaaaa      4320
     tccagaattt atacccctac cattttgcta gttacaaagt caggtacacc cagaaacaag      4380
     ttcaggatgt cacatgcgaa agcgaacaat tagaaatcat agcaaaagaa cacactagag      4440
     ctcatagaaa tgcaatagag aataaaattc aaatacttaa taatttcttc ttccctagcc      4500
     taaagaaaaa aattgaaaag ataacaaagg catgcgaaac ttgcaaagaa agcaagtacg      4560
     acaggcatcc tcaaaaaggt gaattgcaac caactcctat tccgacttat cccggccaaa      4620
     ttatccacat tgacctatat acgacagaga gaactatcgt tctcaccgcc gtagacaaat      4680
     tctcaaagta tgcacagatt aaaatcctaa attcaaaagc agccgaagat ataaaacacc      4740
     cactacgtga ggttatgata gctttcggta tgcccaaact agttgtcatg gacaacgaaa      4800
     gagccctaaa ctccgcatct ataaaattcc taatagaaaa ccaattaaaa tcaaaaatat      4860
     acacgacacc accatatagc tcaacaagca acggtcaagt cgaaagattt cattcaacac      4920
     tcactgaaat aatgagatgt gtgaaaaagg atgacggcat aacaaatttc gaagatctaa      4980
     tatttaagtc gactcagtta tacaaccaat ccatacactc caccgtgaat gcaaaaccga      5040
     tagacatatt tttcggaact cgaatcacca acgaccccca ggagttagag aaaaatagaa      5100
     acaaagtcac agataaatta aaaaacaaac aagctaatga tctagaatat cataataaca      5160
     agaaaaaagc aataaaacaa tacaaaaagg gcgacacagt ttactgcaaa atagacaaaa      5220
     gattaggttc caaactgacc ccgaaataca aaaaagaaat agtcgaagaa aatcgaaata      5280
     ccaccataaa aacacaaggt ggacgggtaa tccacaaaaa taacttaaaa acataatatc      5340
     cttacagatt cttcctacca acatgcttcg gcttagcgac catattggat tactcccatt      5400
     cacaaattat acccataaaa acaggagtca ccgcactaga aaacggcacc tacagaatta      5460
     ttcacgtatt caatatcgaa gaatacgaaa tggcgttcgg caacttatcg aacgaactta      5520
     acgaaataaa taaaacacac ccactatttc cattactcac atttgaattt gcaaaagtag      5580
     aatcagatct gaaaacatta aaaccaacac aaagaaaagc cagagcagtc aatgcattag      5640
     gcacagtttg gaaatggctg gccggcacgc cggaccacta cgattatgaa atcttagttt      5700
     caaaaacaga tgagcaagta gaaaataaca ataaacaatt aataataaat aaaattctaa      5760
     gcaaaagaat gaatgaatta accgaaaaca caaataaaat tgtaaaagaa accatagaca      5820
     ataagaactt tcaaagcgaa atagctacat tactgaaata caaaatacaa atttttaaag      5880
     aggaattaaa taacttaata tacgccattc attgggcaaa aaccaacaca ataaactcaa      5940
     taattctgtc aaaaattgaa accgaaaaaa ttgcaaattt actagaagaa aaaggtacat      6000
     tttttattaa tccagaagaa ttgttagaat ttgctaaaat taaaattgcc acaaatggma      6060
     aaaaaatatt gtatatcatt aatatcccaa ttttatcaaa tgaaatttgt acaaccttat      6120
     tacwagtacc aataaagaaa cacaacaaaa tcaataagct aaaatttawt aacataatta      6180
     attgtaatca aaaaatattt ggagttaagg aaaattgcga aaaccataat gataagagca      6240
     tttgtaaaaa aaccaagcta gtagacctaa gtaacgacac ttgtgtaaca cgaattctaa      6300
     aaaacaaaaa gccgattgta aatttatawa taamcaacat gtacccgacc acgaagaatt      6360
     gttcactgga acaatactgc tcaacgattt caaaggagaa ataaaaatcg acgaggaaac      6420
     aacggaacta cggggaacat tcctcatcca attcgaaaat tccacggtca ggattggaga      6480
     agacctctac ttatcgaagg taatgacgtc cgtagaagca acaccaccac tgctgcaaat      6540
     aatagacggg aaatcagaag ccgaggaagt actctcatta caaatgttaa aggaaattaa      6600
     tattaacaac acaaaagaac taaaaacact ccgaaacagt agcacaacca caacaatagt      6660
     caattttgga ctctcaacca cgctgttcat catactaaca ataatagtca cctgttggat      6720
     aaagcaaaga tccggcacaa gagaaattaa tagacaggaa gacaatcccc cgsagcagag      6780
     tcaaaccatc gaaacaagat tctacatcgc gtccgaggac gtccgcattt aaagggggag      6840
     g                                                                      6841
//
ID   Gypsy-5_DGri-LTR repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   07-MAR-2011 (Rel. 16.03, Created)
DT   23-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DGri_;
KW   Gypsy-5_DGri-LTR; Gypsy-5_DGri-I.
XX
NM   Gypsy-5_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-358
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Direct Submission to RU (06-MAR-2011).
XX
RN   [2]
RP   1-358
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 358 BP; 129 A; 92 C; 62 G; 75 T; 0 other;
     agttaacatc catcataaca aataactaaa cccaacgcat tcaaataaat aagccaacac        60
     tacgaatatc caaagtcaat gcactcgaac gaattccata aaacacgcgc gccccgtcag       120
     catatttcac agctacagcg catggacaag cgccccgtca gcagatccca cgggaagacc       180
     atcgtgggac ccacaacggg caactgacac cgtcggcgac aaaaccgcaa cgatcagcag       240
     aagcagcagt ccgaggttaa gttatgataa gtttcagttt ataaattcag tcttaataaa       300
     acattcaaac ggaacaaatt ggtttttttt attaaaaacc tcgaggactc gtttaatt         358
//
ID   Gypsy-5_DHyd-I repbase;    DNA;    INV; 4579 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4579
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2410-2410 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4023
FT                 /product="Gypsy-5_DHyd-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MQNQNLLELARTMQASTREQQQTRGVTLPKFFSDTAG
FT                 ADASKWSITADIILTEQPLEGSRLIMALSEAMVGSASQWLTQIAYPGIKWI
FT                 EFKELFLRRYENSETSSAMFLNLLNSRPTNGECLAVYASRLVTTLTSNWKN
FT                 KNIEEIAVSIVLAHLANVDNRLERIVFTSKVQTRSDLQSELGAFSFKKHRN
FT                 VDRDDDSGPGPDAKKRRILTIVCHFCGKPGHKIAECRAKMRQKGDATSQRD
FT                 KPTVTCFKCGQPGHFANQCPKKESTSTQGAFQRKTVNQCFVPEPTGVMMQL
FT                 GETYPISFDSGAECSLIKEKICSKLAGKRFNSIIMLKGIGDTGIYSTLQIL
FT                 SQVTINENALQILFHVVQDNHLKSDIVIGREILKQGFNVTISQNKFNVVKA
FT                 KAVNICSIDREPVDLTNLDTELREADKDKLIKMLENYSTALVKGAPSTRVT
FT                 TGEMKIRLIDPTKTVQRRPYRLSPEERDIVREKLSELLKCNIIRPSCSPFA
FT                 SPMLLVKKKNGTDRLCVDYRELNSNTIADRYPLPLISDQIARLRGANYFTC
FT                 LDMASGFHQIPIHPDSIEYTAFVTPDGQYEFLTMPFGLKNAPSVFQRAVMR
FT                 ALGDLAYSYVIVYMDDIMIVSPTVELGLERLKIVLDILTDAGFIFNVNKCS
FT                 FLKTVVQYLGYEVRAGEIRPNSRKIVALTSLPPPQTVFGVRQFIGLASYFR
FT                 KFVPGFSQVIKPLYSLTSGRESFAWTTELESIRKKIVTILTNEPVLVIFDP
FT                 QYPIELHTDASSIGFGAMLLHRINNKLHVVEYFSKTTSPAESRYHSYELET
FT                 LAVFASVKHFRHYLLGREFVVYTDCNSLKASRTKIDLTPRVHRWWSYLQSF
FT                 KFDIQYREGKRMAHVDFLSRNPVTQKQLILEKIPEKRINIAEISNNWLFAE
FT                 QQLDPDIAALVSKLNSNDLLDEVTKTYDLRKGMLFRKIQKNGKTRCLPVVP
FT                 RNFRWSVVNQVHESIMHLGWQKTLDKVYQFYWFEKMNKYVRKFVDNCITCR
FT                 TAKSHSGKVQAELHPIPRVSIPWHTVHMDITGKLSGKSDLKEYIIVQIDSF
FT                 TKFVHLYHTLKIDTESCIRAIKSSTSLFGAPTRIIADQGRCFSSGQFAEFC
FT                 CSKTIKLHLIATGASRANGQVERVMSTLKNLLTAVELSQRPWQDALGEVQL
FT                 ALNCTTNRATEASPLEMLIGKEGRPLGLVPPLDTELEVDLDSTRARASSSM
FT                 KSLAFYNKNRFDKSKAAVVRHSVGDYVLLKNEERHQTKLDPKFKGPFLVVK
FT                 VLDGDRYMLKSLSSKRLYKYCHEDTRKFPEGNVPHELDIEDEDPGSSNGLI
FT                 EAEGEPSK"
XX
SQ   Sequence 4579 BP; 1459 A; 923 C; 993 G; 1204 T; 0 other;
     tcagaagtgg gatcagcacc acctcctgca ttctcagagg atcagtggcg cataatttta        60
     caaatgcaga accagaatct gctggagctt gcaagaacca tgcaagcgtc aacacgggag       120
     caacagcaga ctcgtggcgt cactttgcca aaatttttct ctgacactgc aggtgcagat       180
     gcctcaaagt ggtccatcac agctgacatt atattaacgg aacagcccct agaaggaagc       240
     agactcatca tggcactaag cgaagctatg gtgggcagtg cctcacagtg gctaactcaa       300
     attgcatatc ccggcattaa gtggattgaa tttaaggaat tattcctccg ccgctacgaa       360
     aatagtgaaa cgtcgtcggc aatgtttcta aatctactaa acagtcgccc aactaacggc       420
     gaatgtcttg cggtttatgc tagccgtttg gtgaccactt taacttccaa ttggaaaaac       480
     aaaaacatcg aagaaattgc tgtttcaatt gtgctcgcgc atttagccaa tgtggataac       540
     cgcttggaac ggattgtgtt cacgtcaaaa gttcaaacta gaagtgactt gcaatccgaa       600
     ctaggcgcat tctcctttaa aaaacatcgt aatgttgacc gtgatgacga ctccggacct       660
     ggacctgacg ccaagaagag gagaatattg acaatagtgt gccatttctg tggcaaacca       720
     ggacataaaa ttgctgagtg cagagccaaa atgcgacaaa agggggacgc gacatctcag       780
     cgagacaagc caactgttac ttgcttcaag tgcggccagc ctggacactt cgcaaatcaa       840
     tgtccgaaaa aggaatcaac aagtacacag ggagcattcc aacggaaaac tgtgaaccag       900
     tgctttgtac cagagccaac tggagtgatg atgcagctcg gtgagactta cccaatttct       960
     tttgattctg gcgcagagtg ttcactcatt aaagagaaaa tatgtagtaa gctagctggt      1020
     aagcgtttta acagcattat catgctaaaa ggtataggcg atactggcat atatagcacc      1080
     ttacaaatat taagccaagt caccataaat gagaacgcac ttcaaatatt gttccatgta      1140
     gtgcaagata atcatttgaa aagcgacatt gttattggcc gcgaaattct taaacaagga      1200
     tttaatgtca ctatatcaca aaacaagttt aacgtagtaa aagccaaagc cgtaaatatt      1260
     tgctcaatag atagggaacc agttgacctt acaaatctcg ataccgaatt gcgcgaggct      1320
     gataaagaca aactaataaa aatgcttgag aattactcca ctgcacttgt aaaaggggca      1380
     ccatctacac gagtcacgac aggggaaatg aaaattcgct tgattgatcc aaccaaaact      1440
     gtacaacgcc ggccctatag acttagccct gaagaaagag acattgtccg agaaaagtta      1500
     agtgagttac ttaaatgcaa catcattcga cccagctgct ccccttttgc cagtcctatg      1560
     ctgcttgtca agaagaaaaa tggtacagac cgactttgtg tcgactacag agagttaaac      1620
     tctaacacaa tcgcagacag gtaccctttg ccgctcatta gcgaccagat cgctaggctg      1680
     cgtggcgcaa attacttcac gtgtcttgat atggcgagtg gtttccacca aattcctatc      1740
     caccctgatt ccatagaata cactgcattt gtgaccccgg acggtcaata tgagttcctg      1800
     accatgccgt tcggactcaa aaatgcgcca tccgttttcc aacgggcagt catgcgtgcc      1860
     ttgggtgact tggcctattc atacgtgatt gtttacatgg atgatatcat gatcgtgtca      1920
     cccacagtcg aattaggatt ggaaaggttg aaaatagtac tagacattct cacagatgct      1980
     ggattcattt ttaatgttaa caaatgtagt ttcttaaaaa cagtcgttca atatctggga      2040
     tatgaggtaa gagcagggga aattcgacca aactcgcgaa agattgttgc gttaacatcg      2100
     ttgccaccgc cacagacggt ttttggtgta cggcagttta ttggtcttgc atcctatttt      2160
     cgcaaattcg tacccggatt ctctcaagtc ataaagccgt tgtattccct aacatcagga      2220
     agggaaagtt ttgcgtggac tactgagttg gaaagcattc gcaagaaaat tgtgactatt      2280
     cttacaaacg aaccagttct ggtaatattc gacccgcaat accctataga actacacacc      2340
     gacgctagct caatcggatt tggtgccatg cttttacatc gaattaacaa taagcttcac      2400
     gttgtagaat attttagtaa aacaacttcg ccagccgagt ctaggtacca ctcgtatgag      2460
     cttgaaactc tggcagtatt tgcatccgtt aaacatttcc gtcactactt gcttggcaga      2520
     gaatttgtgg tttatacaga ttgtaactcg ttaaaggcat cgcgaaccaa aatagactta      2580
     actcctagag ttcatcgctg gtggtcttat ttacaatctt tcaagtttga catacagtac      2640
     agagaaggaa aacgtatggc acatgtcgac ttcttatcta gaaacccagt cactcagaaa      2700
     caattaattt tggaaaaaat tcccgagaag cgaataaaca tagcagaaat ctcaaataat      2760
     tggttgtttg ccgaacagca attggacccg gatattgctg cccttgtcag taaactgaat      2820
     tcaaatgacc tactagacga agtaactaaa acatatgatt tgagaaaagg gatgttgttt      2880
     cgtaaaatcc aaaaaaatgg taagacacga tgcttgccag ttgtgccccg aaatttcaga      2940
     tggtcagtag ttaaccaggt acatgagtca atcatgcacc ttggttggca aaaaacactt      3000
     gacaaagttt accaatttta ctggtttgag aaaatgaaca aatatgtccg taaatttgtt      3060
     gacaattgta taacctgcag gacagcaaag tcacattccg gcaaagttca agcagaatta      3120
     catcctatac caagggttag catcccttgg cacaccgtcc atatggacat tactggcaaa      3180
     ttaagtggta aaagtgattt aaaggaatat atcattgttc aaattgacag cttcacaaaa      3240
     ttcgtacacc tgtaccacac tctcaaaata gatacggaga gttgtatcag ggccataaag      3300
     tcttcaactt ccttgtttgg tgcaccaaca cgcattatag ctgatcaggg tagatgtttt      3360
     tctagcgggc agtttgcaga attttgctgt tcaaaaacca taaaacttca tttaatcgcg      3420
     actggggcaa gtcgtgctaa tggacaagtt gagcgcgtta tgagcacgct caagaaccta      3480
     ttaactgcag tcgaattaag ccaaaggccc tggcaagatg ctctcggcga ggtgcagcta      3540
     gctttaaact gcacaacaaa tcgggcaact gaggctagtc ccttagaaat gttaataggg      3600
     aaagaaggtc gacctcttgg attagttcct ccattggaca cagaattgga agtagactta      3660
     gactccacac gggctcgagc aagtagcagt atgaaatctt tagcctttta caacaaaaat      3720
     cgatttgata agtccaaggc cgccgttgta agacacagtg ttggtgacta tgtccttctc      3780
     aagaacgagg agagacacca gacaaaacta gacccaaaat tcaagggtcc atttttggta      3840
     gttaaagtcc tagacggtga cagatacatg ttaaagtcgt tatcgagtaa acgattatat      3900
     aaatactgtc acgaggacac aagaaaattt ccagagggaa atgtgcccca tgagctggac      3960
     attgaggatg aagatccagg ctcgtcaaat ggtctgatag aagcagaggg tgaaccgtcc      4020
     aagtgagacg atggtgagcc gtccaagtga gacgaaggtt atccgtccaa gtgagacgat      4080
     ggtgagccgt ccaagtgaga cgaaggttat ccgtccaagt gagacgatgg tgagccgtcc      4140
     aagtgagacg aaggttatcc gtccaagtga gacgatgatt gtttcttttt gaatgaaatt      4200
     tggaaattta gttaaagaaa atgtaaaatc gacaatttgg caaaatatta tgtaataaaa      4260
     caagcatcat gttttatttt tgtaacttgc ataggtgaag ttattgaatt gaattgaaag      4320
     aaatatgttt tcaaatgttt taattaagaa taaatgttaa aagtttgtat gaagaaatgt      4380
     tgaactgaat attttatcag ttggatatcc gtctaagaga gacgattgtt aatggttatc      4440
     cgtttaagag aaacgatgat tattggttgg atatccgtct aaaagagacg atgaattaag      4500
     tttgaaatct attacaaaga catttttaaa gttaatgttt ggcatattac acgaggacgt      4560
     gtcaaggtca ggatggccg                                                   4579
//
ID   Gypsy-5_DHyd-LTR repbase;    DNA;    INV; 403 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-403
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2419-2419 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 403 BP; 98 A; 85 C; 98 G; 122 T; 0 other;
     tgtcggagcg tactgtatgt acgcactgta tttgattgtt cctgcgtgtt gcacgtacgc        60
     gctgtgtgtg tattgctttg tatgagaatt ctggttatta ccagaattcc tgtgtgtgta       120
     ttgctttgta tgagaattct ggttattacc agaattccta atttcatcat actaaaaaat       180
     attgcatcag ccgctaattg cgccctgatt ggtcctttgc attttgtcgc tttaagaagt       240
     cccgttatag cgcgacgaca gcgctacaac gctgtcgtcg agtgtggttc ggtgcgaggc       300
     agagaaacga aaaggcgagc agttcaactt tgaatcgaga agcctgcgca tcgaaactcg       360
     ctgcgctatt agagccatgg aaaatactaa cgacgctcca aca                         403
//
ID   Gypsy-5_DKi-I repbase;    DNA;    INV; 4940 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.07, Created)
DT   01-JAN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DKi_;
KW   Gypsy-5_DKi-LTR; Gypsy-5_DKi-I.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4940
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1313-1313 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2465-2971] - Reverse transcriptase
CC   Positions [4031-4507] - Integrase core
CC   'TTCG' target site duplication
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2087..4444
FT                 /product="Gypsy-5_DKi-I_1p"
FT                 /translation="MPLNTVMPSYEETVKEIFSIDYTEDEQMSYICGTNND
FT                 QGLNRRLEEIIKCNYFSVEKPAEPFVKCEIKLNLETSKPFSCAPRRLAYSE
FT                 KEKLQKLLDEYLKDGIIQPSESEYASPIVLVKKKTGDIRLCIDFRKLNKVL
FT                 VKDNYPIPLIDDLLDKLVNKKVFSKLDLKNGYFHVFVNKESVKYISFVTPL
FT                 GQFEFLRMPMGLKTASAVFQRFVNRIFEDLIRENKVIVYMDDIMIASKDTE
FT                 EHFQILKEVFLRLAQNKLELRMDKCEFLQTNIKYLGFIINGEGIRADDKGI
FT                 EAIQNFPVPDKTQSVQSFLGLCSYFRRFIKDFSTLAKPLYDLLRKDEKFKF
FT                 GEKEMNCFSTLKEKLVQAPVLAIYNYKDEVELHCDASALGFGAVLCQKKED
FT                 GKLHPIFYFSKRTTVAEAKYHSFELETMAIIHALRRFRIYLYGKRFKIITD
FT                 CNSLTLTLNKIELNPRIARWALELQNYDYELIHREGKRMQHVDALSRCTNI
FT                 LIVESNTFEDNLVICQAKDPKVQEIKKRLEKDEHKLFEMRNGIIYRKCNDG
FT                 RLLFYVPTDMEEHVLYKYHNEIGHVGRDKMLDSILKSYWFPSAKEKCLSHI
FT                 ENCLKCVAFSPKTGKEGFLHCIPKGSKPFELIHIDHYGPVDSGRSKKHIFV
FT                 VIDGFTKFVRLYATKTTNTREVVTALKDYFRAYSKPKCIISDRGSCFTSKE
FT                 FDDFVSEFDIKHMKIATGSPQANGQVERVNRSLGPMIAKLIEPEKGIYWDT
FT                 VIDKVEHVLNNTQHRSIKQTPSKVLFGLEQRGKTV"
XX
SQ   Sequence 4940 BP; 1710 A; 901 C; 1102 G; 1218 T; 9 other;
     acgtcagaag tggtcattac tcactatgcc tgacgtggat ttgaagcaat tctcggtgct        60
     ccaactgaag aactggttgg gagctctcgg acgcccgact tccggcacta aagcggagtt       120
     aatagcgcgt ctgcaagcaa tctctccgga gacacgtggc gatccgccaa ccaagacatc       180
     gagcagccag ggcgaccaac caccaaacgg ccgatcggca gcagaaccag cagacgagac       240
     ggatggagct gcatctttgc tggtactgca ggagccacag ggtggaggct tgcaagaggt       300
     ctcaggcgac gcgcactcaa tggcgtcgca tacctcggac aacgtcgagt ttgagcaact       360
     atcgctcgtg gatgccgaaa aagccaccct acagaagatt cgtgatgaaa tagacgcgag       420
     catggccgta ttgcagagga ttcacacaga gatcgacgac gcaaacaaga acaaatccgt       480
     tcatgttcan gaaatccatg acgtcatcgc aaataccatg gaaaattcta gaagtgctaa       540
     cattggcgcc aacagcgacg ctgttaagat taacagcacc aaagtgacca tcaccgccga       600
     taacattggt ccggacaata ccagtgttgg aaaacggatc gatggcagtg ntgatcaacg       660
     catgaacaca aatgtaaaca aactactgga atctccggca gcatcgcttg ctttggcaaa       720
     agaagttaca atggaatacg acggcagcgt gtgtgcgcgc aattgggtca cacagcttca       780
     gaacattggc aaggtgtata atttagacga tggctgcatg catatgcttc tgattgccaa       840
     gctgaaggga aacgcgcaac gctggctgca cgcaaacgcc acgcgcattc tggagtcggc       900
     cgatcagctt tgcgagcaac ttatcatgac gttcggcgtt aaaatgtcca aaggagagct       960
     gaggagcgca ttccaaagac gtcaatggcg tccagaagag aagttcgccg cttatttcga      1020
     ggacaaggtt atgctagcta acgacatcaa catcgatttg gaggagcttc tggagaacat      1080
     catagaaggc attccagcac cagcgctgcg caaccaggca cgcatacagt gcttttccga      1140
     gccgatgcag attctgcgag ccttcgcgga agtccgttta ccagagcgca aaacaggagg      1200
     canttcgaca aagcagctat ctggaaaagt tgcacccaac aaggacttgc gttgcgccaa      1260
     ctgcaactct aaagggcact tcgccaagga gtgcctcaaa ccgaagaggg agcccggttc      1320
     ctgctacgcc tgcggcacgt ttggacactt cgtcgggcag tgcccggagc gcaagagtgc      1380
     gaacacaaac aattatgtaa gacagattaa gatttttttt cacaatagtt ttaaaacccc      1440
     attaattaca gaatgcctca tagacacagg gagcccaatt tcattttcga aagtaagcag      1500
     tatacccaaa gaagttaatt tagagaccgt ttcggagaac tatttcgggc tgaataaaag      1560
     ccaactgaag atatttggaa aaattttgtg ttacgtatta aaagaaagaa taaaatgtta      1620
     tttttacatg tacgtggtcc caaacgagtc tatgagtcat aatgtagttc ttggaagaaa      1680
     ttttatggaa gcttgccagc tgaaattgga tccagacact ttgggaaagg ttacaattga      1740
     ccctttagat attaaaaaag atagaaaaac aaataatgat acacttagtc atacagttag      1800
     tgagacagtt agtgaaacag ttagtgaaac agttagtgag acagttagtg atacagttag      1860
     tgaaacagtt agtgagacag ttagtganac agttagtgat acagttagcg aaacagttag      1920
     cgagacagtt agtgagacag ttagtgagac agttagtgan acggttagtg aaacagttag      1980
     tgaaacagtt agcgaaacgg ttagtgaaac ggttagtaaa atagttagtc ctgaaattag      2040
     tgatacagtt antcctacgg ttagtaaaac ggttatcgaa acagttatgc ctttgaatac      2100
     ggttatgcct agttatgagg aaactgttaa agaaatcttt agtattgatt atacggagga      2160
     tgagcaaatg agttatatat gcggcacaaa taacgaccaa ggcttaaacc gccgattaga      2220
     agagattatt aaatgcaatt actttagcgt agaaaagcct gcagaacctt tcgtcaaatg      2280
     tgaaataaaa ctgaatttgg aaacttcaaa accgtttagc tgcgccccaa ggcgactagc      2340
     ttattcggag aaagagaaat tgcaaaaatt gctagatgaa tatttaaaag atggaattat      2400
     acaacccagc gaatccgaat atgcttcacc catagtttta gtcaaaaaga agacaggaga      2460
     cataagatta tgtatagact ttagaaaact gaacaaggtt ttagttaaag acaattatcc      2520
     gataccgctt atcgatgacc tcttagacaa actggttaac aagaaagttt tttcgaaact      2580
     tgatttaaaa aatggttatt ttcatgtgtt tgtcaataag gaatcggtta aatacatctc      2640
     gtttgttacg cctttaggac aattcgaatt tcttaggatg ccaatgggcc tgaaaactgc      2700
     atcggcagtg tttcaaagat ttgttaacag aattttcgag gatcttatta gagagaacaa      2760
     agtgatcgta tacatggacg acatcatgat cgccagtaag gacactgagg aacattttca      2820
     gatcttaaag gaagtgtttc tcaggttagc tcaaaacaaa ttagaattaa gaatggataa      2880
     atgtgagttt cttcaaacta atattaaata tttaggattc attataaatg gcgaaggcat      2940
     tagggctgac gacaaaggga tagaagccat acaaaatttt ccagttccag acaagacaca      3000
     atccgttcaa agtttcctag gcttatgttc atacttccgt agatttataa aagatttttc      3060
     aacattagcg aaaccattat acgatctttt gagaaaagat gaaaaattta agtttggaga      3120
     gaaggaaatg aactgttttt caacgcttaa ggaaaagcta gtgcaggcac cggttttagc      3180
     tatttacaat tacaaagacg aagtagagct gcactgtgat gcaagcgctc ttggttttgg      3240
     tgctgtgcta tgtcaaaaga aagaagacgg gaaattacac cccatatttt acttttcgaa      3300
     gcgcacaact gtcgctgagg caaaatatca cagtttcgaa ctggagacaa tggctattat      3360
     tcacgcactg cgaagattta gaatatattt atatggaaaa cgctttaaaa ttattactga      3420
     ctgcaattcg cttactttaa ccctgaataa gattgaactt aatccgcgaa tagctagatg      3480
     ggcgctagag ctccaaaact acgactatga gctcatacat agagaaggaa aaagaatgca      3540
     gcatgttgat gctcttagta gatgcacaaa tattctgatt gtagaatcga atacgttcga      3600
     agataattta gtaatctgcc aggccaaaga tccaaaagtt caagaaatta aaaaacggtt      3660
     agaaaaagac gaacataagt tattcgaaat gagaaacgga attatttata gaaaatgcaa      3720
     cgatggcaga ctattatttt atgttcctac ggacatggaa gagcatgttc tatataaata      3780
     tcacaatgag atcggacatg taggtagaga caaaatgttg gatagtattt tgaaatctta      3840
     ttggtttccc agtgccaaag aaaaatgcct aagccatata gaaaattgtt taaaatgcgt      3900
     cgcgttctcc cctaaaacag gcaaggaagg atttctgcat tgcattccga aaggtagcaa      3960
     accgttcgaa ctaatacaca tcgatcatta tggtccagtc gactcaggta gatcgaaaaa      4020
     acacattttt gtcgtgatcg acggttttac gaagtttgta cgcctatatg ccacaaagac      4080
     tactaataca agggaagtcg tcaccgccct gaaggactat tttagagcat atagcaagcc      4140
     taaatgcatc atctcagaca ggggaagttg ttttacatcc aaagagttcg atgattttgt      4200
     gtcagagttt gatataaagc atatgaagat tgcaactgga tcacctcagg ctaacgggca      4260
     ggttgaaaga gtcaatagaa gtttaggtcc aatgatagcg aagctaatag aaccagagaa      4320
     aggtatatat tgggacacag taatagataa agttgaacac gtgttaaata atacgcaaca      4380
     ccgtagtatc aagcaaaccc caagcaaagt gctttttggc ttagaacaga gaggaaaaac      4440
     tgtggangag ttaaaagaaa atactccaga agaaagggac tcgaagaaaa ttagaaccga      4500
     agcagaaaag aatcaaggaa aagntcaagc gtataacaaa aagcattatg ataagaccgc      4560
     aagaaagcca tctgaataca aaaaaggaga ttatgtgatg gcgaaaaatt tcgactgcac      4620
     agcaggtgtc tctagaaagt tgattccaaa anataagggt ccatatgtaa tttcaaaagt      4680
     attaagaaac gacaggtttt tgttaaagga cgtagaaggt tttcaggtat ctcgtaaccc      4740
     ttaccaaggt gtctggagca ttcaaaatat taagcattgg ataggcaaaa agaaaaagca      4800
     cgattaagca ataataatta cgacaaactg caataatatg taaatatgta taaatataag      4860
     aaaaatttta attcattgta aatatacaaa taagtaatat aaaccatgat caggggatca      4920
     gctagtcagg acggccgagt                                                  4940
//
ID   Gypsy-5_DKi-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.07, Created)
DT   01-JAN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila kikkawai genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DKi_;
KW   Gypsy-5_DKi-I; Gypsy-5_DKi-LTR.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-312
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1314-1314 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 312 BP; 108 A; 57 C; 62 G; 84 T; 1 other;
     tgtggtaggc tagatacaca taaggcccac tgtacattgt attagcatag aatcaggata        60
     aagcccattg tattgaagag gcatacaaga taaaakcccc gttagagtta agtataacac       120
     tgtcatctct gtctatctcg cacattagca ttaagggata aatatgtacg tatacctatc       180
     tcgcttacgc atcgaaaggt ataagtaaag gaaaagaaac gacgccgcga cattcggtgg       240
     cttgcgttcg agaagaaaag tttaaataaa gcatcggatt tatattctta cgttacaact       300
     ataacgttta ca                                                           312
//
ID   Gypsy-5_DMel-I repbase;    DNA;    INV; 5485 BP.
XX
AC   .
XX
DT   07-AUG-2018 (Rel. 23.08, Created)
DT   07-AUG-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; CIRCE;
KW   Gypsy-5_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5485
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 18(8), 949-949 (2018).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other. This refined element should
CC   replace the original CIRCE. In the genome this element was
CC   captured to form a complex repetitive structure.
XX
FH   Key           Location/Qualifiers
FT   CDS           700..2163
FT                 /product="Gypsy-5_DMel-I_1p"
FT                 /translation="MMMRSNENLVDVDTDASVTCTICNGPVRNLDLVETRC
FT                 KHSFHKHCLDNYLKNHDKCPICGQPCSQSELGSHLPLSTKSQGNRMMTRSG
FT                 SRNTAKQHEKSDPNSQQEICSGDSSDSRVVTEDRVQQIVQSSMQAFQASML
FT                 QSVTEQITMAFTQLNKSTFVNNGQSELQQDIQNNFGRDAPEINSERNNNSH
FT                 VRTSPDFRSDRSDLSLDRPDRISNIISNWRIKFSGSANDIAIEDFIYRVNC
FT                 LTSQSLNGNFELLSHFANLLFAGPALAFYWRVHRSVDNMNWNVLCRRLKER
FT                 YQDQRSDREIKIAMRRRKQGSTENFDDFLDAMLSIADSLSEPMQDSEITVE
FT                 VRHNLKPEIKHELLHIDTPNLATLRKECHRHEDFFRSTRTKPIQRPNTSKR
FT                 FVNAILHEDDSEDQSEEEQDVEDEICVVRTSEKIKCWNCDESGHGYQNCLK
FT                 TRRIFCYGCGTPEVYKPNCAKCKSTSENSQQGIRYANKTNVRR"
FT   CDS           2290..5418
FT                 /product="Gypsy-5_DMel-I_2p"
FT                 /translation="MQIVNCKYLGKIHFIIIWIRKRSFNRFTISSIVQNKN
FT                 DIRPFTHIDIFGQSHLALLDSGANKSVIGGELAQQLISSKPFNKFKSVVRT
FT                 ADGQTQNVAGTIQIPLTYNSVDNNFEFLIVPSIKQSVICGMDFWYTFGISI
FT                 KQTVLINEINFEPEEDSTRVRLSDSQKSKLQKVIDFFPSFENEGLGLTNLI
FT                 EHNIDTSNAKPIKQRFYPLSPAKEKLLCIEIDRMIKMDVIEEAPSSPWSSP
FT                 VTLHIKPGKVRFCLDARKLNAVTVKDAYPIPIMDGLLSRLPPVHCISKIDL
FT                 KDAFWQICLDQESRAKTAFTVPNRPLYQFKRMPFGLSNAPQTMCRLMDLVI
FT                 PYQLKSHVLVYLDDLLVLSNNFEDHLLHLSEVATQLRKAGLTINVQKSQFC
FT                 LKTVDYLGYLVGEGTLQVNPNKIAAVRDFPVPKTQKQLRRFLGMTGWYQRF
FT                 ISNYSTVIFNLTELLRGKSFSWNDLAQEAFDNIKDKLCSAPCLIHPNYDKP
FT                 FILQCDASLHGVGAVLAQCDDSGCERPIAFMSKKLNKAQRNYTVTELECMA
FT                 VVLAIKKFRMYIDGHSFKVVTDHSSLRWLMNQSDLSGRLARWAIKLQGYSF
FT                 EIEHRKGTENVVADALSRSFEDVDDIAAIDLEVHSEIDLSSSAFQSEKYSA
FT                 LRDKLVSQKLPDFQVSDDYIYHRATFPNCTDVSPDDCWKLLVPESLRHSVM
FT                 SSAHDQPTSAHCGMAKCLERIRRRFYWPNMVINVRDYIRNCETCQTTKYPN
FT                 RSLKPPMGAQVQSDTIFQRLYLDFIGPFPRSKSGNIGILIILDHFSKFTFL
FT                 KAVKKFNTKVIISILRDEIFSCFGVPETVVSDNGTQFKSRDFSDFLSKYGV
FT                 RHMFTGAYAPQSNGAERVNRSINAALRAYIRSDHREWDVFLSSINCSLRNS
FT                 IHQSIGISPYQVVFGKHMISHGNDYKLLRKLNLLTEGDVKLSRTDEFQRIR
FT                 SNIAKHLNKAYETNQKSYNLRARPRSFEVGQEVVKRNFVPSNAANNFNAKL
FT                 APVGVKARVKERIGQSIYLLEDMNGKEIGRFHAKDIW"
XX
SQ   Sequence 5485 BP; 1662 A; 1137 C; 1070 G; 1616 T; 0 other;
     gagttataat tggcgcccaa acgtgggaca gcccgatgcc tgattaggca cttgtcgttt        60
     gacaaccgag cttcccgtta ataaacaatc catccactct tagtttcagt taggtatttc       120
     atattccgtc ctggaattta tgatatctgg agagttccgg agccataccg gaggaaatgt       180
     tatgctttta tatgtttttt tttctatcag ttcggtaata atcgaacatt attgttaaaa       240
     aaaagaacat tctaatttga gtaattggtt cttaggaatt atagttctga tttaaagtcg       300
     gttctatacc aggatttcac tattcaaaaa ttacctcctt atcatttagg atcgagattt       360
     ttctagctgg atagattcgg ctagttactc ttctaagtgg taagagttca taaataaata       420
     aatgacattt attttacaac tctgtatgca caccccgtta gcttttcgta cctattgaat       480
     tatacaacct actgctttgc tactcagggt aagacccgca ggtattattt ttggtcgctt       540
     aacttttatc tttttgtcgc ttagcgttga tcgttggatc ttagcgcgta ctcattatct       600
     tttttcgctt atctttgatc gttggatctt accgcctatt tttcttgttc taacgagagg       660
     aattgttaga ctttatatat tcttctagaa gcttcgaaaa tgatgatgcg aagtaatgaa       720
     aatttagttg acgtagatac ggatgcgtcg gtgacatgca ccatctgcaa cgggccagta       780
     cgtaatctgg atttggttga aacccgttgt aaacattctt ttcacaaaca ttgccttgac       840
     aattacctta agaaccatga caaatgcccc atatgtggcc agccatgttc tcaatccgag       900
     ttaggatctc atttgccttt gtcaactaaa tctcaaggta acaggatgat gacccgttca       960
     ggttctcgga atacagccaa acaacatgag aagtctgatc caaattccca acaggaaatt      1020
     tgtagcgggg atagttcaga ttccagagtt gtgacagaag accgtgttca gcaaatagtc      1080
     caaagttcaa tgcaggcctt tcaagcaagc atgctacaat cagtgacaga acaaatcact      1140
     atggcgttca ctcaattgaa taaatccaca tttgtaaata atggacagag tgagctgcag      1200
     caagacatac aaaataattt cggtcgagac gctcccgaaa taaactcaga aagaaataac      1260
     aactcacatg ttaggacttc accagacttt cgtagcgatc gaagtgatct ttctttggat      1320
     agacctgata ggatttccaa tattatatca aattggcgta ttaaattcag cggttcagcc      1380
     aacgacattg ccattgagga ttttatttac cgcgtaaatt gtctcacttc gcaaagcctg      1440
     aacggaaact tcgaacttct ttcccatttc gctaatttac tgtttgcagg accggcctta      1500
     gcattttatt ggcgtgttca cagatcggtg gataacatga attggaacgt gttatgcagg      1560
     cgtttaaagg aaagatatca agatcagaga tctgatcgtg aaattaaaat tgctatgcgt      1620
     cgccgtaaac agggtagcac agaaaatttt gatgattttt tggatgcaat gctttccatt      1680
     gcagattccc ttagtgaacc aatgcaggac agtgagatta ctgtagaagt tcgtcataat      1740
     ctcaaaccgg agatcaagca cgaattactg cacatagaca ccccaaactt agcaacattg      1800
     cgtaaggaat gtcatcgtca cgaagatttc tttcgaagca cccggacaaa gccaatccaa      1860
     cgtccgaaca caagcaagcg ttttgttaac gcaatcctgc atgaagatga ttccgaagat      1920
     cagtctgagg aagaacagga tgtcgaggac gagatttgtg tcgttaggac ttctgagaaa      1980
     attaagtgct ggaactgcga tgaatcaggt cacggttacc agaattgcct taagacacgc      2040
     cgtatttttt gttatggttg cggaacaccg gaggtgtata aacccaactg cgcaaaatgt      2100
     aaatcgacat cggaaaactc tcagcagggc attcgttatg cgaacaaaac gaatgtccgc      2160
     cgttagcctc gaaaatacaa actgaaccaa attctgtggc aaatgatgtt cattccattc      2220
     tgccctcaac tcaacctgac gtaacattat cccaaacttt taatccatat catttgcaag      2280
     tgctggagta tgcaaatcgt aaattgcaaa tatttaggga aaattcactt cataataatt      2340
     tggattcgta aacgatcatt caaccgtttt acgatttcat caattgttca aaataagaac      2400
     gatattcgac ctttcacaca cattgacata tttggtcaat cgcatttagc tctcctagac      2460
     agtggcgcca acaaaagtgt tataggtggt gagctagcac aacaattaat atcaagcaag      2520
     ccatttaata aatttaaatc ggttgtgcga actgctgatg gccaaacgca aaatgttgca      2580
     ggcactatac aaattccctt gacttacaac tcagttgata ataacttcga attcttaata      2640
     gtcccttcca taaagcaaag cgtaatatgc ggaatggatt tctggtatac gtttggaatt      2700
     tctattaagc aaacagtttt gatcaacgaa atcaactttg aacccgaaga agactctact      2760
     cgcgtacgat tgtctgattc acaaaaatca aaattgcaga aagtaataga ctttttccca      2820
     tcgttcgaga acgagggctt aggattgact aacctgatag agcacaatat cgatacatcc      2880
     aatgcgaaac caatcaaaca acgattttat ccactttcgc ctgctaaaga aaaacttttg      2940
     tgcatagaaa tcgatcgcat gattaagatg gatgtcattg aagaggcacc ttcatcgcct      3000
     tggtcatctc cagttacatt gcatatcaaa ccaggcaagg tgcgattttg tctcgatgca      3060
     agaaaattaa atgcagtcac agtaaaggac gcatacccaa tcccaattat ggatggactg      3120
     ctaagtcgtc ttccaccggt acattgcatt tccaaaattg acctcaaaga tgccttttgg      3180
     cagatctgtt tagatcaaga atcccgtgcc aagactgctt tcaccgttcc aaataggccc      3240
     ctttatcagt tcaagagaat gccttttgga ttgtcaaacg ctccacaaac catgtgccgt      3300
     ttgatggacc tcgttatacc ctatcaatta aaatcgcatg tattagtcta cctcgacgat      3360
     ttgctggttt tgtcaaacaa tttcgaagac catcttttgc atttgtccga agtagccacc      3420
     caattgcgta aagctggatt gacaattaat gtccagaaaa gtcagttctg cctgaaaaca      3480
     gtagactatc tcggttacct ggtgggcgaa ggcacactac aagtaaatcc gaacaaaatc      3540
     gctgctgtga gagactttcc ggttccaaag acccaaaaac aactaagacg atttcttggt      3600
     atgactggtt ggtaccagcg attcatatct aattactcca cagtcatttt caatcttaca      3660
     gagttgttac gtggcaaatc cttcagttgg aacgatcttg ctcaagaagc ttttgataat      3720
     atcaaagaca agttatgctc tgctccttgt ctcattcacc ccaattatga caaaccattt      3780
     atcctgcagt gtgatgcttc actacatgga gtgggtgcag ttctagctca atgtgatgat      3840
     tccggttgtg aacgtccgat agcattcatg tctaagaagc tgaataaagc ccaacgtaac      3900
     tatacagtta cagaactcga atgcatggct gtagttctgg caattaagaa gttcagaatg      3960
     tacatcgacg gtcatagctt caaagtagtc accgaccact caagtcttcg atggctaatg      4020
     aaccaatcag atttaagcgg gagattggca agatgggcta tcaaacttca gggttattcc      4080
     ttcgaaatcg agcatcgcaa gggaacagaa aatgtggttg cggacgcttt gtctcgatcg      4140
     ttcgaggatg ttgacgatat tgctgcaata gaccttgaag tccattccga aattgattta      4200
     tcttccagtg catttcaatc ggaaaagtac tctgctctca gagataaatt agtgtctcaa      4260
     aaattacctg attttcaagt cagtgatgac tatatttatc atcgggcaac attccccaat      4320
     tgtactgacg tttcaccaga cgattgctgg aaattgcttg tacctgagtc gttgcgtcat      4380
     agcgtaatga gttcggctca tgatcaacca acatctgcac attgtggaat ggctaaatgc      4440
     ttagagcgta ttagacggcg tttttactgg ccaaacatgg ttatcaacgt tcgtgattac      4500
     attcgaaatt gcgagacgtg tcagaccact aaatatccca atcgttcttt aaaaccacca      4560
     atgggagcac aagtgcaaag cgatacaatt tttcaaagac tttatcttga ttttatcggc      4620
     ccatttccca gatcgaaatc cggcaacatt ggtatactga ttattctgga tcacttttcc      4680
     aaatttacct ttttaaaagc tgtgaaaaag ttcaacacta aagtgatcat cagtatattg      4740
     cgggatgaaa tattttcatg ctttggtgta cccgaaacag tcgtgagtga caacggaact      4800
     caatttaaaa gccgtgattt ctctgacttt ctttcgaaat atggcgttcg tcatatgttt      4860
     actggtgcat atgctccaca atccaacgga gctgagagag ttaaccgttc tataaacgct      4920
     gctttaagag cttacattcg ctctgaccat cgcgaatggg acgtgttcct cagtagcatc      4980
     aactgttctc ttcgtaactc gattcaccaa tctattggta tatcgcctta tcaggttgtt      5040
     ttcggtaaac acatgatatc ccacggtaat gactacaaac tgttgcgcaa acttaattta      5100
     ctcacagaag gtgacgtaaa attatcaaga actgacgaat ttcaaagaat tcgctccaac      5160
     attgccaaac atttgaataa ggcttatgag acaaaccaaa agtcttacaa tctccgagca      5220
     cgaccccgat cttttgaggt tggtcaagaa gttgttaaaa gaaatttcgt tccaagtaat      5280
     gcagcgaata attttaacgc gaaactcgct cctgtcggtg ttaaggcccg agtcaaagaa      5340
     aggattggtc aatcaatata tctcttagag gacatgaacg gcaaggaaat tggtagattt      5400
     catgccaagg acatttggta attgcttttg actccttttt cagtttttat tgttagtcac      5460
     agggactaaa aatcaaatct gtggt                                            5485
//
ID   Gypsy-5_DMel-LTR repbase;    DNA;    INV; 1672 BP.
XX
AC   .
XX
DT   07-AUG-2018 (Rel. 23.08, Created)
DT   07-AUG-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1672
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 18(8), 948-948 (2018).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 1672 BP; 484 A; 342 C; 318 G; 528 T; 0 other;
     tgtgggagtc gagccaaatg gcaaccttat atgtgctacc gcacttattt ggtaacgaac        60
     cattttagcc aaattcaaat cctggcaaaa ttgaatattg ccctataaaa ataccacaaa       120
     attcccgagt aggattatag caagctacgg tcacatatga tttgcatact tccgttctct       180
     tttcgtgaag gcgtgatcga gtgcagttta actttatgca aaatccatga ttaaaaatcc       240
     acgagcatcg tgtggtttgg ataatagttt ttcaaggcaa atactgccaa gtgatagttt       300
     cctttaactg cgtcgctgcc ggtcccacat ttggagatag aagtcttagt ggctgcgtcg       360
     ccaaggcggt ctgtattgtt tttcgccaaa cttttgacca cgcgtgaaac ttactgtggc       420
     ttcatcgatc gcagaaagat ttacaactgc ttgcatcagg agcacccacc gcgtgcagcg       480
     gaaagctggg cttgtcctct tctgctgccg acagatcgca ggtcaacccc cccccccccc       540
     agagttggcg ttcttttttt ttctactctt catcgccgca cgcaggaagc agatcgccgt       600
     gcatccattt tatgcacaag tcaacttggt gtcttcttca tccgtgcgca ttccaagaat       660
     atttgtgcac aacacgagcc ccaggctgct ggccttgtcg ctgcgtatgc tgcgaacctg       720
     aagcagccgc aacacgaatg atcgtgtcca gtcttaagta tctttagaat agtttttcat       780
     atttgtgtta attttaccta aaaatattta cttataaatt tctacgattc taatttagct       840
     taacttgtgg gagatctgac aagtatatat atgtgatttt cccgatttat attaatacct       900
     acagcaaatc atcaacagtc atcaggcctg ctgacatcga tggaaagtgc gtgagtacgg       960
     aacaaaaata ataaaaacac acaagcatat atataaaaag tcagatattc ctaaatagtg      1020
     tgcttaaaat accttgcctt aattaatcat atatctagat ctcttaattt aaagaagttt      1080
     aaagtttaaa tatacattaa tcatacataa ttctaacgta aagtaagcca aacaaacaaa      1140
     agcattaatg taaacttaaa taccagtatt tgcattccta tcttgattat ttttccttta      1200
     ttttatcgtt gataagcaaa attactcaat aagagatttc cttaacgtaa ataacgtaat      1260
     ttttagttta aggattaggt ttaggaaaat gtatcggaat attatcttta tcttcaatta      1320
     tatggggtcc aaaatgaact aatctgatgt cttgttgggc accaaagggt atgtaaagca      1380
     gtggttgtat tagggtggag tccgaatgga tttcacaggt agggtgggta tagaataagg      1440
     ccaataacat ctgggcctca tcttcaatag gtacactttc ttgtccgctt cttaaccgtt      1500
     tggttatcgt tttttttttt gaatctaccg tatctctgtc tacagtattg tagctgtgac      1560
     actcttgttc atctcaacac aaaacccacg cccattttcc ctgagcatgc cggtaaaaat      1620
     agtagacaga gtgtgttggg gtggacaacg ctctatgagt gtgttcgtta ca              1672
//
ID   Gypsy-5_DMo-I repbase;    DNA;    INV; 4875 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4875
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           260..1390
FT                 /product="Gypsy-5_DMo-I_1p"
FT                 /translation="MAQANPQMPAQQLYEQLINKEQQLEELHQAYVTLQGN
FT                 INAAQKERLFQNINYLATFTGTGDISINSFFSSVEYLLQGVEDSGLRREAT
FT                 RTIFNKTIQGQAKDVVINIPEPDNWQLIKSTLKLRYRPDTEPHQIYRKIYE
FT                 LKVDTVSELAAELQNIKYKTDELRVYHQNDNFIDLSNVESLLVNAAKEMTQ
FT                 GTLLDKIYEERNLNDILKIMMLRRYENSCIRFQYKKSKPNRYNAEAESSKK
FT                 NNNYKNENTQQQNYNKKQQYYQQNYNNNKQSYYQPQSGQNNNQNNQQQFYR
FT                 NNSGQYRQDYTQHNSGQSHPNQNNQQTISQQSKQYRSRNSEPMEIENLETK
FT                 QDTNSSQETKNDYDQAEVNNTVFFMKQPRNAYHY"
FT   CDS           join(1348..4260,4235..4534)
FT                 /product="Gypsy-5_DMo-I_2p"
FT                 /translation="YSFFYEAASECLPLLELNIDKHRYIALIDTGASLSLV
FT                 NNQINGHTKIKLNKPISYSTINSKDIIEYEIHTTAPREFNLPNNARVRWKL
FT                 APLKGRKYNFIIGIDLLQFLSAVINIEKNSLTLNHKENRIINKPYQYEEIC
FT                 ALESTIDKYDSLALDHLNTQEVIEVKKIIKRYSKLFFKEGDKLTSTTEIEH
FT                 EIRTTTDEQLNSKLYRYPPQHEEEVRKQIKEMEEQGIIRKSNSRYSSPLLV
FT                 IPKKLDNSKQQKFRIVIDYRKLNEITIDDKFPIPNINSILDKLGRAQYFTT
FT                 IDLAKGYHQILVKEEDRKKTAFVTPHGLYEFIRMPFGLKNAPATFQRLMNE
FT                 ILRDFINKKCVVYLDDILIFSTSLQEHVQAINEIFKVLEDKNLKIQIDKCN
FT                 FMKKETEFLGHILTKEGIKPNPNKVAIIEKLPLPKTEKEIKSFLGITGFYR
FT                 KFIKDYAKLAQPITKYLKKNTKINTKDPTFIEAFEKLKQLTCSHPILRFPN
FT                 FEKPFTLTTDASNYAIGSVLSQEGHPICFASRTLNNHEKNYSATDKEFLAI
FT                 LWSVNYFRPYLYGRKFKLLTDHQAIKFLYSKHKGKDISPRHQRWLLKLGEY
FT                 QFDIDYLRGRENRVADFLSRIKGNDFDPQQDNNDNISDINIITNIEEDNYS
FT                 LAATIHSAEENLQDHFLIKEEIVNKYKTQIIITNGKTEECKTIHGKRIIFI
FT                 AKHDFPTMEKIFMKYLNKGKVGIYSDLPDQEYNIVQEKLIQLYSNNKQIEF
FT                 TKCTHRAQDIETETEAVKQISIYHVQESMHSGIQETYNKIKNKIFYPKLLE
FT                 LIQTVINQCDFCKEVKYDRNPVRNKFVKTETPSDKNQIIHIDTYVIKNTYF
FT                 LTIIDKFSKFAAVYPLNDRNHITIVEQIENHFTKIGKPNKIVADNEFNSIR
FT                 IKELLSRENIELHLTKPNSHTGNADVERLHNSLAEKFRIIHNTETENISVK
FT                 QIMQRAVRNYNDRYTFEIITTGTPFEAQNNKIDLKIIKNNIETTKIKMLDK
FT                 NNRNRENYEEEREEGFIKNYKAVRHKEVPKFKKAKLKNINPANIKRVYKFT
FT                 EDKNDNRIEDSSNT"
XX
SQ   Sequence 4875 BP; 2190 A; 766 C; 725 G; 1194 T; 0 other;
     ggcgcagccg gtaggatcct ttttttaaaa aggattctgt gataaatacg aactaaaaat        60
     aagtcgacaa atttataaat cgatcattat aaaataaaag tcaaactaaa aataagttga       120
     caatttttat aaatcgaaaa aaaaaaggtc aaactacaaa taagttgacc aatttaaaaa       180
     aaaaaaaaaa aaaaaaaagt acatctcaac gctggcaacc agaaaagaaa agagagcagc       240
     atattacgac aaaagcagga tggcacaagc taacccacaa atgccagcgc agcaattata       300
     tgagcagttg atcaacaagg agcagcaact agaggagcta catcaagctt acgtcacgct       360
     tcaaggaaac atcaatgcgg ctcagaagga acgattgttt caaaacatca attatttggc       420
     aacgttcacg ggaacaggtg atatatcaat taactcgttc ttcagcagcg tggagtacct       480
     tctccaagga gtggaggact ctggactaag acgagaggcc actaggacaa tcttcaacaa       540
     gacaatccaa ggacaggcga aggatgtagt tatcaatata ccggaaccag acaactggca       600
     gctaatcaag tcaacgctaa agctgaggta tcgaccggac acggaacccc atcaaattta       660
     ccgtaaaatt tatgagttaa aagtagacac agtaagcgaa cttgcagcag aactacaaaa       720
     tattaagtat aaaactgacg aattaagagt ttaccatcaa aacgataatt ttatagattt       780
     aagtaacgta gaaagtttac tagtaaatgc agctaaagaa atgactcaag gcactttact       840
     tgataaaata tacgaagaac gaaatttaaa tgatattcta aaaataatga tgttacgtag       900
     atacgaaaat agttgtatta gatttcaata taagaaaagt aaacccaata ggtataacgc       960
     tgaggctgag tctagcaaga aaaataataa ttacaaaaac gaaaataccc aacaacaaaa      1020
     ttataacaaa aagcaacaat attatcaaca aaattataac aataacaagc aatcttatta      1080
     tcaaccacaa agtggtcaaa acaataacca aaacaatcag caacaatttt acagaaacaa      1140
     ctcaggtcag tacagacaag attatactca acacaattca ggacagagtc accctaacca      1200
     aaacaatcag caaacaattt cacaacagtc aaaacagtat aggtcaagga attcagaacc      1260
     catggaaata gaaaacctag aaaccaagca agatacaaac agttcccaag aaacaaaaaa      1320
     tgactacgac caggcagagg ttaataatac agtttttttt atgaagcagc ctcggaatgc      1380
     ctaccattat tagaacttaa catcgataaa catagatata tagcattaat agatacagga      1440
     gcaagtttaa gtctagtaaa caaccaaatt aatgggcaca caaagattaa gctgaataaa      1500
     cccatatcat atagcacaat taatagtaag gacataatag agtatgaaat tcatacaaca      1560
     gcacctagag aattcaattt accaaacaac gctagagtcc gctggaagtt agccccacta      1620
     aagggaagga agtataactt tattataggt atagaccttc tacaattttt gagtgcagtt      1680
     attaacattg aaaaaaacag tttaacatta aatcacaaag aaaaccgtat aataaataag      1740
     ccatatcaat atgaagaaat ctgtgcatta gagagtacta tagataaata tgatagcttg      1800
     gcattagatc atttaaatac acaagaggta attgaagtta agaaaattat aaaacgatat      1860
     agtaaactct tttttaaaga aggagataaa ctaactagta caaccgaaat agaacatgaa      1920
     atacggacaa ctacagatga acaacttaat tcaaagctat atagataccc accacagcat      1980
     gaggaagaag tgagaaaaca gataaaagaa atggaagaac agggaattat tagaaaaagc      2040
     aattcaagat attcgagccc acttttagta ataccaaaaa agttagacaa ttcaaaacaa      2100
     caaaaatttc gtattgtaat agattataga aaactcaacg aaataaccat cgacgataaa      2160
     tttcctattc ctaatattaa ttcaattctt gataaactcg gaagagccca gtacttcaca      2220
     acaatagatc tagcaaaagg ctaccatcaa attttagtaa aagaggaaga cagaaagaaa      2280
     actgcttttg ttacgccgca tggcttatat gaatttatta gaatgccatt tgggttgaaa      2340
     aatgcccccg ccacttttca aagactaatg aatgaaatct taagagactt tattaacaaa      2400
     aaatgtgtcg tatatttgga cgatatactt atttttagta catcgttgca agagcatgtt      2460
     caagccatca acgaaatatt taaagtatta gaggataaga atttgaagat tcaaatcgat      2520
     aaatgtaact tcatgaagaa ggagacagaa tttttaggtc atatcttaac caaagaaggt      2580
     attaaaccaa atccaaacaa agtagccata atagaaaagt tacctttacc aaaaacagaa      2640
     aaggagataa aaagtttttt aggcataaca ggtttctaca gaaaatttat taaagattac      2700
     gcaaaattag cacaacccat aacaaaatat ttaaagaaaa atactaaaat aaatacaaaa      2760
     gatccaactt tcatcgaagc atttgaaaag ttaaagcaac ttacttgttc acatcctata      2820
     ttaagattcc ctaactttga aaagccattc acgcttacaa ctgacgcttc aaattatgcc      2880
     ataggatcgg ttctttctca agaagggcat ccaatttgtt ttgcgtcaag aacgttgaac      2940
     aatcatgaga aaaattattc agcaacagat aaagaatttt tagcaatact atggagtgta      3000
     aactatttta gaccatatct ctacggaaga aaattcaaac tattaacaga tcaccaagcg      3060
     ataaaattct tatattcaaa acataaaggg aaagatattt cgccaaggca tcaaagatgg      3120
     ttgctaaaac taggagaata tcagtttgac atagattact taagaggaag agaaaacaga      3180
     gtagccgatt tcttaagcag aataaaaggt aatgattttg acccacagca agataacaat      3240
     gacaatatat cagacataaa cataataaca aatattgaag aagataacta ttcgttagca      3300
     gcaactatac attcagcaga agaaaattta caggatcatt ttctaataaa ggaagaaata      3360
     gtaaataaat ataaaacaca aataataata acaaatggca aaacagaaga gtgtaaaacg      3420
     attcatggaa aaagaataat tttcatagca aaacacgact tcccaacaat ggaaaaaatt      3480
     tttatgaaat acttaaacaa aggaaaagta ggtatatatt cagatctacc ggatcaagaa      3540
     tataatatag tgcaagaaaa attaattcaa ttatactcta acaacaaaca aatagaattc      3600
     actaaatgca cacatagagc tcaagatata gaaactgaaa cggaagctgt aaaacaaata      3660
     tctatttacc atgtacaaga gagtatgcat tcaggtattc aagagacgta caacaaaata      3720
     aaaaataaaa tattttaccc taagttatta gaattaatac agacagtgat caaccaatgc      3780
     gacttttgca aagaagtcaa atatgataga aacccagtta gaaacaaatt tgttaaaaca      3840
     gaaactccat cggataaaaa ccaaataata catatagaca catacgtaat aaaaaacaca      3900
     tattttttga ctattataga taaattttcg aaatttgcag ccgtttaccc actaaacgat      3960
     agaaaccata taaccatcgt agagcagatt gaaaatcatt ttacaaaaat aggcaaacca      4020
     aataagattg tagctgacaa tgaatttaat tcaataagaa ttaaagaact attaagccga      4080
     gaaaatattg aattacattt aacaaaacca aacagccata caggcaatgc agatgtagaa      4140
     agactgcata actcattggc agaaaagttt aggataatac ataatacaga aacagaaaac      4200
     atatcagtaa aacaaattat gcaaagggca gtaagaaatt ataacgacag gtacaccttt      4260
     tgaagcgcaa aataataaaa tagatttaaa aatcattaag aataatatag aaaccactaa      4320
     aatcaagatg ctggataaga acaaccgaaa cagagaaaat tatgaagaag aaagagaaga      4380
     ggggtttatt aaaaattata aagcagtcag acacaaagaa gtaccaaagt ttaaaaaagc      4440
     taaacttaag aatattaacc cagcaaatat aaaacgtgtt tacaaattta cagaagacaa      4500
     gaatgataac agaattgaag actcatcaaa tacttaacca aaacaaaatt cgctctttct      4560
     gaagcatagc agagcaaatc aaatatatta acaaatgttg ataattttat ttcttttaaa      4620
     tatttgtttc tgacaaacag caatccttat aagtattcaa aatgaaatca aaaatatatt      4680
     tttttatatt taactgaaaa aaaaaaaaaa aaagaaaact atcataatta atcaaagaat      4740
     ataaataaat aatataagtt actactcatt actcaaaaca ataattataa gtaataccta      4800
     ccttatatat tacctttaat aagaaaatta ataacaacac agaattcagg agaattctta      4860
     tttaaatgag ggaga                                                       4875
//
ID   Gypsy-5_DMo-LTR repbase;    DNA;    INV; 325 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-325
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 325 BP; 130 A; 42 C; 56 G; 97 T; 0 other;
     agttatgtat gtatttatgt aatcgatata agcataattt taagcgattt gtcatcacta        60
     agagaaaaag tccataacta aatgttgcat gtttgtgatg atgaaatgtc tagcaacatt       120
     gtgaaattaa aattatgaag aaaatagcta tgctactaag ctggcgccag aaatatctag       180
     caacattgtg aaataaaaaa gaaacatgct atgtcgctcg aataggctag cagcatttga       240
     ataaagtcag ttctaatctg agacttaacg gaagaagttg aaccttgtta tttaatttca       300
     aaaataaaga actcaaaaca aaatt                                             325
//
ID   Gypsy-5_DPer-I repbase;    DNA;    INV; 5234 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.08, Created)
DT   01-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DPer_;
KW   Gypsy-5_DPer-LTR; Gypsy-5_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5234
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1504-1504 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2150-2578] - Reverse transcriptase
CC   Positions [4241-4720] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..973
FT                 /product="Gypsy-5_DPer-I_1p"
FT                 /translation="MNYADIRAKTKSELSDILRRQNVYFDQDANIHQLRTA
FT                 VKKIMEDTHELGNTAPSADETMQADIFAVPVEREIDRDNRSAQHAVKAAPE
FT                 EHGENVQKAREAFMPRQDNACSKLTMRSDEYEEESRRLQQLEQLYVSRKRL
FT                 ADLKLSILKTEKEAMELETPRDCIDLTHIEALMRPFSGDDDQAVTSWISNF
FT                 EDIMNFHGVSESKCWILAKRLLGGSAKAYIDHVAPLTWQLMRAELLNVFEQ
FT                 KVTAWDIGKRLEARKIANNESALQYFVAMCSIASQADMATSDVVKFIVEGL
FT                 QDKTGMAASMLYC"
FT   CDS           1580..5125
FT                 /product="Gypsy-5_DPer-I_2p"
FT                 /translation="MLPLPVLLGRDALKVIEVKLVHKKNINAKQHTPLSSL
FT                 KQKAISLTCASLFTESKNNINIRLYDKLDGNQSERSELIKRSNPFKNQTQE
FT                 NSRNDKMVIENMNQGDEFSNFCASVEIDEEEHINVGFEFGPTLAEKCREVI
FT                 KTYYLHKEFDFKAPPKYQMQIRVTETTPFHCTPRRLSYHEREKVAEIVDDL
FT                 LEKKVIRHSESPYASPLVLVKKKSGELRMCVDYRGLNKRIVKDNFPLPLIE
FT                 DCLEFLENKCCFSIIDLKSGYHQIGVEEKSVPYTSFVTPQGQYEYLRMPFG
FT                 LKNGSAIFQRFISELLRDFIRNKSIVVYMDDILVATKTVEEHMDILKRLCI
FT                 RFSEQNLEINLKKCRFVNRNIDFLGYKVNQNGIVPSDSHIEALKKYPVPQN
FT                 VKALHSCLGFFSYFRRFMLSFATTAKPLVQLLKEGGPFPMNREQVKTFETL
FT                 KNALANPPVLAIFSPNRETELHTDASSYGYGAILMQRQDDGKMHPVSYYSG
FT                 KTTERESRYHSFELETLAIIYALRRFRAYLEHRSFKIITDCNSLVQTLTRK
FT                 SISPKIARWSLELENYDYSIMHRPGASMAHVDALSRQDQVTNMLEDGYRVK
FT                 YGLEKSNLEKDESRKQYTRNSVSRDNPGSEHRGTVENPVIKCRELNISRER
FT                 SSTVQNPAIECGESSAVGSRLGNRWKSDDRENLGSDCRDNIENSEYREEDG
FT                 SKIEIRDLSQCRGSVNDVVGGVKYISSRNSDKVKKCVEDTVERDKLEFQEE
FT                 RLLKSLIVGVVGATPEDVDLILQTEQMRDKEVVRIRKMLEDGIEVDFEMID
FT                 GIVYKRSCENKLCFYVPMCMEEQLIRRSHEKLGHLAAEKCVSDLLRTYWFP
FT                 SMRSKVARFIRNCLPCILHSMPKTIHNRTLHSIPKSCVPFHTLHVDHLGPL
FT                 PSIRSKRKHLLVVIDAFTKFVKLFPVNSTSTREAKDALSKYFDFYSRPTRI
FT                 ISDRGTCFTSLEFSSFLQERGIEHIKVATGAPQANGQVERVNRVLTPMLGK
FT                 LSEPLEQADWYRLMSKVEHAINNSVNSSTKKTPSTLLFGIPQKGPVVDELT
FT                 EYLEEKLASELRELETIREIASENIRLSQKRNEKMYAHKHRAPLKYEPGDY
FT                 VAVRHVDTTPGINKKFAPKYRGPYRINRVLDNDRYEVVDIEDCQLTQMPFR
FT                 SILEPARLKPWVECKDKTMVSCC"
XX
SQ   Sequence 5234 BP; 1752 A; 890 C; 1279 G; 1312 T; 1 other;
     tatcaggtgt ggggtttgcc caaaaaaaaa aaaaaaaata aataaataaa actctgcgat        60
     gaactatgca gacataagag cgaaaaccaa aagtgaactt agcgacatat tgcgtaggca       120
     aaacgtatat tttgatcaag atgccaacat acaccaatta cgtacagcag tgaaaaaaat       180
     catggaagac acgcatgagc taggaaatac ggcgccaagc gcagacgaga ctatgcaggc       240
     agacattttt gcagtcccgg ttgagcgcga gatagataga gacaaccgta gtgcacaaca       300
     cgcagtaaaa gcggcgccag aagaacatgg tgaaaatgtg cagaaggctc gagaagcatt       360
     catgccgcga caagacaacg cttgttcgaa attgaccatg cgatcagatg aatacgaaga       420
     agaatcgcgc cgtttgcagc agttggaaca attgtacgtt tctcgcaagc gcttagctga       480
     tctcaaatta agcatattga aaacggagaa agaggctatg gagttggaaa cgccgagaga       540
     ttgcatcgac ttgacacaca ttgaggcgtt gatgcgtcca ttttctggag atgacgacca       600
     ggctgtaacc agttggataa gtaactttga ggacattatg aatttccatg gtgtatccga       660
     gtcaaaatgc tggatattag cgaagcggct gctaggcgga tcggcgaagg cgtacatcga       720
     ccatgtggcg cctttgactt ggcaattgat gcgagcagaa ttgctcaacg tctttgagca       780
     gaaagtgaca gcgtgggaca ttggaaagcg actggaggca cggaaaattg caaataatga       840
     aagcgcattg caatatttcg tcgcaatgtg cagcatagcg tcgcaagcag acatggccac       900
     gagcgatgtg gtcaaattca tcgtagaggg actgcaggac aagacgggca tggcagcatc       960
     catgctatac tgcakcacac tcaacgagtt gcgtgacaag atggtcacct atgataaggt      1020
     cagaagagct cctggcgtcg tagcaattcg tagcgaaggt atgacaaagg gaaaactaaa      1080
     tgtgagtatg gcagttgggc agcagcaagg tggtggcgca atgcgttgct acaactgtcg      1140
     gcaatttggg cacgttatga aggaatgcag tcagccaaag agaccggatg gggcatgttt      1200
     taactgttgg agtaccagcc acctatattc gcagtgcccg aaacgaaaga tggccactag      1260
     ggtagctgca gttcaagatg aggagcgacc aggagaaaaa aacaacgacg atttagcggc      1320
     tgtccagtta atcactttat gacttccgtt tggtgaacaa agaggcgtca gtatttttag      1380
     tctatttgat acaggtagcc ctgtaagttt tattcataag tctttgatac cgaagtcggc      1440
     tatagttgaa gcctataatg aagttaggaa atactatgga ctaggaggac aaccaattcc      1500
     catatgggga aaatttaagt gccatattga attttgcaca aagaaatata tcgttttatt      1560
     aaacatcgta gatgataaca tgctgccttt gccggtattg ttgggacgcg atgcccttaa      1620
     agttattgaa gtaaaattag ttcataagaa aaatatcaat gcgaagcaac acacaccatt      1680
     aagttcgtta aagcaaaaag ctattagttt aacctgcgcg tctttattca ccgaaagtaa      1740
     aaataatatt aacataagac tatatgataa gttagatggt aatcaatcag aaagaagcga      1800
     gctaatcaaa cgttctaatc catttaaaaa tcagacacaa gaaaactcaa ggaatgacaa      1860
     aatggtcatc gagaatatga atcaaggcga cgaattcagt aacttttgtg cgtcggtaga      1920
     gattgatgaa gaggaacata ttaacgtagg tttcgaattt ggccccactc ttgcagaaaa      1980
     gtgtagggaa gttattaaga catactattt acacaaagaa tttgacttta aagcaccacc      2040
     aaagtatcag atgcagattc gtgtaacaga aacaacacca tttcattgta ctccgcgtcg      2100
     tttatcctac catgagagag agaaagtagc tgaaatagta gatgatctgt tagaaaagaa      2160
     agtaatccgt catagtgagt ctccttatgc ttccccgttg gtcctagtaa aaaaaaaatc      2220
     aggagaactt cgaatgtgtg tcgattaccg tggtctgaac aaacgaattg ttaaagataa      2280
     tttcccattg ccccttattg aggactgtct tgagttttta gaaaacaagt gctgtttttc      2340
     cattatagat ttgaaaagtg ggtatcatca aataggcgta gaagaaaaat cagttccgta      2400
     tacatcgttt gtgacaccgc aaggacagta tgagtacttg agaatgccct ttgggttaaa      2460
     aaatggatcc gctatttttc aaagatttat ttcggagctc ttgagagact ttattaggaa      2520
     caaaagcatt gtagtgtaca tggatgatat attagtagcg actaaaacag ttgaagaaca      2580
     catggatata ttaaaaagac tatgcattcg gtttagcgag caaaatttag agataaatct      2640
     aaaaaagtgt aggtttgtca atcgaaacat cgatttcctg gggtataaag ttaatcaaaa      2700
     cggaatagtt cctagtgatt cccatattga ggccttgaaa aaatacccag tccctcaaaa      2760
     tgtaaaagca ctgcactcat gcttgggatt cttttcgtat tttcgacgtt tcatgttgtc      2820
     atttgcgacg acagctaagc ccttggtgca gttgttaaaa gaaggtggtc cgtttcccat      2880
     gaatagagaa caggtgaaga cgtttgaaac tcttaagaat gcgttggcaa atcctccggt      2940
     attagccatt tttagcccaa atagagaaac ggaattacat acagacgcaa gttcatacgg      3000
     ttatggcgca atactgatgc aaagacaaga tgatgggaag atgcaccctg tgtcctatta      3060
     ttctggcaaa acaacagaaa gagaatcacg ttatcatagt ttcgaactag agacattggc      3120
     tataatttat gcattgaggc gttttagagc atatttggag cataggtcct tcaaaataat      3180
     cacggattgt aattcgttag tacagacgtt aaccagaaag tcaattagtc ctaagatagc      3240
     acggtggtcc ctagagttag agaactatga ttactccatt atgcacagac ctggggccag      3300
     tatggcgcac gttgatgcgc tgagcagaca agatcaagtg acgaatatgt tagaggatgg      3360
     ttatagagtc aaatacggtt tagaaaagtc taatttagaa aaagatgaga gtagaaagca      3420
     atatacaagg aatagtgtaa gtagagacaa ccctggtagt gagcatagag gtaccgtaga      3480
     gaaccctgtg attaagtgta gagaattaaa tatcagtaga gagcgtagta gtaccgtaca      3540
     gaaccctgcg attgagtgtg gagaatcaag tgcagtagga agtagattgg gaaataggtg      3600
     gaagtctgat gatagagaga accttggtag tgattgtaga gataacatag agaatagtga      3660
     atatagggaa gaggatggat cgaagattga aattagagat ttgagccaat gtagaggaag      3720
     cgttaacgat gtggtggggg gagtaaagta cattagtagt aggaattcag ataaagtgaa      3780
     aaaatgtgtt gaggatacag tagagaggga caagttagag tttcaggagg aaagattact      3840
     aaaatcattg atagttgggg tagtaggtgc aacgccagaa gatgttgatt tgatattgca      3900
     aacagaacag atgcgagaca aggaagtagt taggattcga aaaatgctag aggatggaat      3960
     tgaagtagat tttgaaatga tagatggtat tgtttacaag aggagttgtg aaaacaaact      4020
     atgtttctat gtaccaatgt gtatggaaga gcagttgata aggcggtcac acgaaaaact      4080
     aggacatctg gccgcagaga agtgcgtgag tgaccttttg aggacctact ggtttccgtc      4140
     aatgagaagt aaagtggcaa ggttcatcag aaactgtcta ccgtgtatac tacactcgat      4200
     gcctaaaaca atccataaca gaacgctcca tagtatccca aagtcgtgtg ttccttttca      4260
     taccctacat gttgatcatt tgggtccatt gccgagtatt agatctaagc gaaaacacct      4320
     ccttgtggta atagatgcat tcactaagtt tgtcaaattg ttcccggtta atagtaccag      4380
     cacgcgggaa gcgaaggatg ccttaagtaa atattttgat ttctatagtc gccctactag      4440
     gataatatca gatcgtggga cctgtttcac ctcgttagag ttctctagtt ttctgcagga      4500
     gagagggata gagcacatta aggtagctac aggtgcaccg caggcgaatg gccaagtgga      4560
     gcgggtgaat cgtgttctta ctcctatgtt aggaaaactg tcagagcccc ttgagcaagc      4620
     cgattggtat aggttgatga gcaaggtaga gcacgccatt aataactccg ttaacagcag      4680
     tacgaaaaag acacctagca cattgttatt tggaataccc cagaaaggac ccgttgtaga      4740
     tgaattaacc gaatacctag aggagaagtt agcgtcagaa cttagagagt tggaaactat      4800
     aagagaaata gcaagtgaga acatacggtt gtcgcagaaa agaaatgaga agatgtatgc      4860
     ccataaacat agagccccat taaagtatga acctggtgac tatgtagcag tccggcatgt      4920
     ggacacaaca ccggggatca ataagaagtt cgcaccaaag tatcgaggac cgtacaggat      4980
     caatagagta ttggataatg atcgttatga ggttgtcgac attgaggact gtcagttgac      5040
     gcaaatgcca ttccgaagta tactagaacc agcaaggctt aaaccctggg tagagtgtaa      5100
     ggataaaacc atggtctcat gttgttaatc gatgaaatag tatgttaagt aagacaatac      5160
     cgaataagaa atgtttaacc aactgtatgc cttagtgtgt agatcgtggg cgatctgtag      5220
     tcaggttgcc cgaa                                                        5234
//
ID   Gypsy-5_DPer-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 17.08, Created)
DT   01-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DPer_;
KW   Gypsy-5_DPer-I; Gypsy-5_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-199
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1505-1505 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 199 BP; 81 A; 29 C; 27 G; 62 T; 0 other;
     tgtaagatat gaatatcagt ttataagatt tgaatattag tttaagattt actcatcgat        60
     agtattataa gaaataccaa tgtactcgat atatcgatac ttgtcctcga caagtatcga       120
     tatgccaaca cacattcatt gatatacgac aatcaagaaa gaagaacata taataaaacc       180
     gtgctattaa aagtttaca                                                    199
//
ID   Gypsy-5_DRh-I repbase;    DNA;    INV; 4665 BP.
XX
AC   AFPP01024517;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DRh_;
KW   Gypsy-5_DRh-LTR; Gypsy-5_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4665
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01024517; Positions   14001   18665.
XX
CC   Positions [2123-2497] - Reverse transcriptase
CC   Positions [3689-4156] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2756..4426
FT                 /product="Gypsy-5_DRh-I_1p"
FT                 /translation="MGLVGYFRKFILNFSISAKPLTDLMKHDAKFYFADRE
FT                 IYAFNMLKTLITQKIILKIFHPQHQTELHTDSSIDGFGAVLLQKLPNDNQI
FT                 HPGYYMSKKTTDVERKFSSYELEILAVVEAFRKFRVYLLGMHFKLVSDCNA
FT                 FTKTMEKREVCTRVARWILALQEFDFEVQHRSGTRIRHADALSRYPVMMIS
FT                 DDSLHSKLKCVQSQDEELKAIINILAEKSSHNNFFMRSGLLYKLVNGDELI
FT                 VVPPVLQREIIRQAHKKGHFSVKKTKEIIGKEYYILNLEDKIQRQIKCCIP
FT                 CIVSNRKLGKKEGELHPLPKEAEPLQAFHINFLGPLESTHKAYRHILAVIY
FT                 GFTKFCWLYPTKTKSSKDVITRLEAQSALFGNPVKIISDQGTSDDFRNYCE
FT                 NEGIALQAVTTGVPRANGQVERLSAIIVSVLSKLSIDDPSKWYKFVSQFQQ
FT                 TINSTYSRSTHTTPFELLVGIKMRTKADIKVKEMIEQELIQIFQDNRDDIR
FT                 KAAKQQILVMQNENKHSYNLRRRPAATYKVGDIVPIKRTQLGGGLKLKSKY
FT                 LGPYSYKSQA"
XX
SQ   Sequence 4665 BP; 1612 A; 917 C; 981 G; 1155 T; 0 other;
     aatatttggg ctcaacctac gtgaaaagtg aaaagtaaaa cgacgaaaag tgtgctagaa        60
     gcaaagattt acaacgagga agactgtgga aaacgaaaag aaaagcttgc aaacacgacg       120
     tacgagagtg tggaaaagac gctacaaaca ccaccgtaat ctgcactata catatactta       180
     taacgacgcg tatgtgtatt taaacgacga gtagagactg tgagtgtgaa cgacgattac       240
     gagtagaagg aagaacaaca attacgagca aagaagaact ttgaaaaaat tatttttaca       300
     actatgtcga cccttgctga ttttgaatcg gttttacagt cgttgaaaac tgaaaaaaga       360
     actgcacaag tttgtctaag aatatgacgg tgatcgacaa aatcgaaaac ggctacgtag       420
     ttttgaaggt tttgattttg tggaatgtga tgaactctat aaacaaaaag tgtcttacgt       480
     tgcgcaaaat ttgtcaaaca acgaccttgc tataatttgc aacattttgg gcttgcaaca       540
     cgacaaaaat gatctgatgc ttcacatttt ccgaaatttg cgtgttagaa aactactgga       600
     agaccttgat gaagaggact cggaagatga tgaaatagac gaacaagaac agcatgacaa       660
     ggacaacgac gagaaaagtt tgagcgatga agacgacaag tttcgttctg tacgcagcaa       720
     cgcagaaatg caggccatag caaacaacaa aaacgcacag gctggtacaa agtttcgctg       780
     tgaattcgcc gcgattttca gtaaacttcc gagatgttga agattctatt aggccattca       840
     gtggagatga tacccatgca gttgaggttt gggttgccga tttcgaagac atggcttccc       900
     tgcaaaaatt cattttcgcg aaacgttctc taaaaggtct cgataaaatg tacattatga       960
     gtgagctcgg tataagaagt tggcaaatgt tgaaaaacgc attgatcaaa gagttccaag      1020
     ccgaagtgaa tggtacgcaa ttacataagt tcttatccga aggcaatgaa agttttcaag      1080
     aatatcttct caaaatgaaa gaaatagctt ctcgtgggaa cgtagataac agtgctctaa      1140
     tgcaatatgt gattgatggc atcaatgatt tgagcgtcaa taaatcgata ttgtacaacg      1200
     ctaaagactt gaaggagttc aaggaaacgg taaagtgcta cgagaaaaat cgtgaaaaat      1260
     ccggaaagcc aaaaaatcaa gacgacaagt caaaatatgt gattggcaaa gacagtgcag      1320
     cccataaaga cgtatccatg caaagaaaga tacattgcta caactgtggt gtaattggcc      1380
     atacatcaaa tcagtgccct aatcgaagca gcggtcggaa atgctttaag tgcagcaatt      1440
     tcggacacat atctaaagac tgccccacag gcaaaattaa aacggttgaa actccgaaaa      1500
     atacgcgcaa agtatcggat gataaattgt cgatgtgtaa agaaatttct atgaaaaaca      1560
     acaagtacac agctcttatt gacacaggca gcaaatacaa tattatgagt gaaaaacgta      1620
     cgtaagcttg aataagcctg aattgagtgc tgttaacatt tttcttgtcg gttttggaaa      1680
     taaccattcg gttcttttaa agaagaattc gaaattgaca atcaagtgtt taaagaaaat      1740
     gttctagtcg tttcatctga ctttttggat gtacaagttg tgttaggcgc aaaattttgt      1800
     agcaacgccg aaatactaat aaatcgtgac ggaataaaaa tacaaagccg agacatacat      1860
     aactccgaaa atgaattaag ttcgctaatg aaaatcaacg tcgaaagtac tgaaagtgta      1920
     aacataaaca ttgaagagag tgcaaccact caagcaaaac gcgaagttta cgacctgatc      1980
     aaaaactata agccgacgag tacaaaaaaa aacaaacgtc gcgatgcata ttgttttaaa      2040
     ggacgatact ccggtacact cgcgtccgcg taggttcgcc ttctccgagc attgtattat      2100
     cgacgatcat atcgaacagt ggctgaagga cggaatcatc gagcattctg agtccgagta      2160
     cagcagtccg gtcgtcctgg tcaagaaacg cgacaataca actcgactct gcattgactt      2220
     cagaaggatt aacaacgtaa tagtacgaga tttgtttccc cttcctttga tcgatgacca      2280
     attggaccgt ctgcaagatg ctcacgtatt cagcacgctg gacctcaaaa acggattttt      2340
     ccacgttaat gtcgatgcag aaagccgcaa gttcacgtcc tttgttactg acaatggcca      2400
     gtaccagttc ttgaaagtcc attttggcct tacgaattct ccagacgtat ttcaaaggca      2460
     cgttaacgca atgttccgag acttgactcg atctggtata gccattccta atgtcgacga      2520
     tattatagtc ccagctacaa acgaaggtga agcagtagcc aaactcaaga cagtcatcaa      2580
     gcgttgtgag gattacggtt tggtgatcaa tctaaagaaa tgctgattcc tcaaaaagaa      2640
     aatcgagttt ctaggccata gcattaaaaa ccaaaaaaat ctgtatctca gatgaaaaaa      2700
     caaagctgtg acgaagtttc ccttaccgac aaaccagaag taactacaaa gctttatggg      2760
     tctggttgga tattttcgga aatttatcct aaacttttcc atctccgcca aacctttgac      2820
     cgacctgatg aaacacgacg ccaagtttta ttttgctgac agagagatat atgcttttaa      2880
     catgctaaag actttaatta cccagaaaat aattttaaag atttttcatc cgcagcacca      2940
     gacagagcta cacacagatt catcgattga tggttttgga gcagttctac tccaaaagtt      3000
     gcccaacgat aaccagatac atccggggta ctacatgagc aagaaaacga ccgacgtaga      3060
     aagaaagttt tccagctacg aattagaaat cctggcagtg gtagaagcat ttcgtaaatt      3120
     ccgagtttac cttttaggta tgcattttaa gttggtcagc gattgcaatg cttttacaaa      3180
     gacaatggaa aaaagggaag tttgtactcg agtcgcacgt tggatcctcg cacttcagga      3240
     gtttgacttt gaagttcaac acagatcagg tacacgcata cgtcatgcag atgctttaag      3300
     ccgttatcct gtaatgatga tctccgacga cagcttgcac agcaaactaa agtgtgttca      3360
     atcgcaggac gaggaactaa aagcaataat taacatcctt gctgaaaaat ctagccacaa      3420
     caatttcttc atgagatcgg gtctgttgta caaattggta aacggcgatg aactgatagt      3480
     tgtaccacca gtccttcaac gcgaaatcat tcggcaggca cataaaaaag gacatttttc      3540
     tgtgaagaag accaaggaga tcatcggaaa ggaatattac atcctaaatc tcgaagacaa      3600
     gattcaacga caaatcaaat gctgcattcc atgtattgtt tcaaaccgca aacttgggaa      3660
     aaaagaagga gagttacacc cattgccgaa ggaagcggag ccgcttcaag catttcacat      3720
     caactttttg gggcctctcg aatcgactca caaggcatac aggcacattc ttgctgtcat      3780
     ttacggattc accaaatttt gttggctgta tcccacaaaa acaaagtctt ccaaggacgt      3840
     catcaccaga ctggaggctc agagcgcatt atttggcaat cctgttaaaa taatatccga      3900
     tcaaggcact tcagacgact tcagaaacta ttgtgagaac gagggtattg cactacaggc      3960
     agttactaca ggagttccaa gagcaaatgg gcaggttgaa cgcctcagcg ccataattgt      4020
     ttccgttttg tccaaactgt ccatagatga cccaagcaag tggtacaagt ttgtaagcca      4080
     gtttcagcag acaatcaatt cgacgtacag cagaagtaca catacaactc cattcgagct      4140
     tcttgtaggt atcaagatgc gcactaaagc tgacattaag gtgaaggaaa tgattgagca      4200
     agaactaatc caaattttcc aggacaatcg agacgacatc cgtaaagctg ccaagcaaca      4260
     gatccttgtc atgcaaaacg agaacaaaca ctcgtataac ctcagacgta gaccagcagc      4320
     aacatacaaa gtcggtgata ttgtccctat taaacgcact caacttggtg gaggtcttaa      4380
     gttaaaatct aagtatttgg gtccctatag ttacaaaagt caagcctaag gacacttacg      4440
     atgttgtgaa agaatctcta tcttctgacg ggccaaaatg cactacctct tgcgccgaat      4500
     atatgaagcc atggattcaa atatcctccg aggacgacgc gatacattcg ggtcgaatga      4560
     ttacgaagca tggccgagtt gtgggaatag agaatgaggg aatatcaaaa atatttagga      4620
     agagaaaaga agtattgaac gagcattaag atcgagagaa gcgaa                      4665
//
ID   Gypsy-5_DRh-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   AFPP01024517;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DRh_;
KW   Gypsy-5_DRh-I; Gypsy-5_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-210
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01024517; Positions   13791   14000.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 210 BP; 98 A; 34 C; 23 G; 55 T; 0 other;
     tgagcaagac gtgcgaaaaa acgaagttaa ataacgacgc gatcaaaata tcagaaaaac        60
     gcagtttaac acgatttaaa ttcattaaaa tacctaaaat tattatcaga actacttatc       120
     actaatttca tttaaataaa actagcaact aattataata aaacaacaaa tagtgggact       180
     tcttatttaa ataggaaaac taatcccaca                                        210
//
ID   Gypsy-5_DSe-I repbase;    DNA;    INV; 6164 BP.
XX
AC   AAKO01005017;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DSe_;
KW   Gypsy-5_DSe-LTR; Gypsy-5_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6164
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01005017; Positions   11431    5268.
XX
CC   'TAATT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1657..2814,2818..4140)
FT                 /product="Gypsy-5_DSe-I_1p"
FT                 /translation="MMRENFFSLPIQNTKCKVFTSNGTIILNKSITLPINN
FT                 TFNRPEQFYLHDFSKDYDLLIGRKLLSNGQSIINYKNSISNSVSIYNKVYP
FT                 LVNSDPNKNHSFYIQKQKIPISDEKLIPTLIKKIDFKLFRLNHLNEEESSK
FT                 LKILLNKFKNLQYEEGDHLTFTNTIKHVINTTHNSPIYSKQYPLAHMHEIE
FT                 VKNQVQEMLRQGLIRESNSPYNSPTWVVSKKLDASGEQKYRVVNDYRKLNE
FT                 ITIPDIYPMPNIDEILGKLGQSQYFTTIDLAKGFHQIEMDPDSIQKTAFST
FT                 KSGHYEYVRMPFGLRNAPATFQRCMNNILRPLLYKHCLVYLDDIILFSSSL
FT                 DEHLNSLKLVFQKLSEANLKLQLNKCEFLKKEASFLGHIVTPNIKPNPLKV
FT                 KSIVSYPIPTKVKEIRAFLGLTGYYRKFIPNYADIAKPLTQCLKKGMKIDT
FT                 KNQNYLDAFEKLKALIISEPILQLPDFEKKFVLTTDASNVALGAVLSQNGH
FT                 PISFISRTLNEHESNYSAIEKELLAIVWATKTFRHYLLGRQFEIASDHQPL
FT                 RWIHTLKEPNAKLQRWRTKLQEFQFTIDYIKGKQNVVADALSRIKIEENHY
FT                 SKATQHSAEEDNSELIHLTEKPINIFNKQIIFVKTDQNKVEKSTYFGKSIT
FT                 TILYDKMTRERAKQFLLDHFIYKYITMYIMSDVDFELIQAAHKEIINTNYT
FT                 KIIRSLILLKNVHSYAEFKEIILQSHEKLLHPGIQKMTKLFKENYYFPNCQ
FT                 PLIQNIINECYLCNLTKTEHRNTKMPFKITPNPEHCRDKFVIDIYSSEGKH
FT                 YISCIDVYSKFATLEQIKTKDWIEC"
XX
SQ   Sequence 6164 BP; 2556 A; 1153 C; 826 G; 1629 T; 0 other;
     aattaaaaac tattttactg gcgcagtcgg taggatacta aaaaagtatc ctaaaaaaga        60
     accgcgagtg gaaaataaat taacttttat aatccggtac tcgtaaacaa ttacgcttgt       120
     gattttcgtt acttcaactt ggattataaa tccatttcgg ttgtcctaat aaagtggaag       180
     aaaacaaaga aaatccccag ttgaaattta tcccataagt ccaacggcag gcgaaagaaa       240
     cattacaaat aataaaatta tagaaaagta aaaatcgttt aactaaacta ccaaataagc       300
     aaaaatcaaa ataataaaaa aaactccaga agactaaaac gtaaaaacat aataaactct       360
     atctaaacaa aactaaaaga aaatacaaaa tggaacaacc taagattgcc gcaccacaac       420
     tcgtaactct aaacgagaac aacctaagtg aagcgagaag acaactcaaa gacattttcc       480
     catttaatgg agatcgctca gcgctttata cgttcattag tagagtggat tacatcctag       540
     aactctaccc aactaacgac ttgcgacaac aacgcattct actcggagct gtggaacgaa       600
     acatagatgg acaagttata agatcattgg gactaccaaa catcgaggac tggtacacct       660
     tgaggtcaaa gttaattgtt gaatacaaac cccaaacgcc aaattacaaa cttttggaaa       720
     atttccgaga aacaccatac aaaggaaatt tacgagcatt ctgcgaggaa gctgaaagta       780
     ggcgtcaact cttaatagct aaactacatc tagaaggtaa ggagaaggta agaaggacct       840
     catcatttat ttgcaagcaa ttagggaatc tattaagaca cttgttcgaa aattaccaac       900
     taatttgttc tgtattttgg ctcatcatga aattcccgat ttaagaacct taataaacat       960
     agcacaaaat gaggggattt atgaagaaca tgcaaatgtt tatattaagc aaaatttcga      1020
     aaaaaatatt aagacgaaaa ttgaaaataa tactttccat gcaaatacaa gtaaaatgaa      1080
     tccaaacttt caaactcact atcaattcag atatccatca tatcaacaac cattacagcc      1140
     ttttcctaat ccataccagt atcgacccat tcaaccacaa tatccataac cattcatgca      1200
     aaatccacaa cgacgaatgt tcaacagacc atccatgaga cctggacaaa atcaatttgg      1260
     tgcaactaga tttgcaaacc cacaacctaa ttttaatagg aatccatttc cacaaacgca      1320
     acaaactata aaacaaatta ttaaacgtcc tagaccagct gacagcgatc aatcaagaat      1380
     gtctgtcgac gaagttagac tacaagacgc acaagaatat ggaccaactg acccaaaccg      1440
     taatcaacac ttttatgaac aagaacttct tgactacaat cgataccaaa cccaggctga      1500
     cagtaaccaa tttataacgc catcagaatt aaatgaaaat atttctcaat ctaacgagaa      1560
     ttttcggttt ccagcctcgg ccaacaccaa tacatagaaa taacacacaa aggtcataaa      1620
     tacaaatgcc tcattgacac aggatcgacc attaacatga tgagagaaaa tttctttagt      1680
     ctcccaattc aaaacactaa atgcaaagtt tttacgtcta acggtaccat aatactaaac      1740
     aagtctatta ccttacccat taacaatact tttaacaggc ctgaacaatt ttatctacat      1800
     gatttctcaa aagattatga tttattaatt ggcagaaaat tacttagtaa tggacaatcc      1860
     attataaatt ataaaaattc catttcaaat tccgtttcaa tttataataa agtataccca      1920
     ttagttaatt cagacccaaa taaaaatcat tctttttaca ttcaaaaaca aaaaatacca      1980
     atatcagatg agaaattaat tccaactttg ataaaaaaaa tagattttaa attgtttcga      2040
     ttaaatcatc taaatgaaga ggaaagttct aaattaaaaa tattattaaa taaattcaag      2100
     aatcttcaat atgaagaagg agatcattta acattcacta atacaataaa acacgtaata      2160
     aacacaacac acaattctcc tatttattct aagcaatatc cacttgctca tatgcatgaa      2220
     atagaagtaa aaaatcaggt acaagaaatg cttaggcaag gtttaattag agaaagtaat      2280
     tcaccatata atagtcctac ttgggtagta tcaaaaaaac tcgacgcttc aggtgaacag      2340
     aaatatagag ttgtaaatga ctatagaaag ttgaacgaaa taacaattcc agatatatat      2400
     ccaatgccaa acatagatga aatactcggt aaactaggac agagtcaata ttttacaaca      2460
     atagatctag cgaaaggctt ccaccaaata gaaatggacc cagactcaat tcagaaaact      2520
     gcattctcca ccaagagcgg acattacgaa tacgttcgga tgccatttgg tctcagaaac      2580
     gcacccgcaa catttcaaag gtgcatgaat aacattctcc gacctctgct ctacaagcat      2640
     tgtttagttt acttagatga cataattctt ttctcttcat cgcttgatga acaccttaat      2700
     tcattaaaat tggtttttca aaaattgtcc gaagcaaatt taaaattgca attaaacaaa      2760
     tgcgaattct taaaaaaaga agccagtttt cttggtcata ttgtaactcc aaattgaatt      2820
     aaaccaaacc ctcttaaagt aaaatctata gtttcatacc caattccaac taaagtaaaa      2880
     gagatcagag cattcctagg actaaccggt tattaccgca aatttatccc taattacgct      2940
     gacatagcaa aacctctgac acaatgtcta aaaaaaggaa tgaaaataga cacaaaaaat      3000
     caaaattatt tagatgcatt tgagaaacta aaagccttga taataagcga accaatttta      3060
     caactccccg attttgaaaa aaaattcgta cttactacag atgctagtaa cgtagccctt      3120
     ggtgccgtcc tttctcaaaa cggtcatcca atatctttca tcagcagaac actaaacgaa      3180
     catgaatcaa attacagtgc gatagaaaag gaattactcg ctatagtatg ggcaactaaa      3240
     acttttcgtc actacttact tggacgacaa ttcgaaatag ctagcgacca tcaacctctt      3300
     agatggatac atacattaaa agaaccaaat gctaagcttc aaagatggag aactaaatta      3360
     caagaatttc agtttactat cgactatatt aagggcaaac agaacgtagt agctgatgca      3420
     ttatcacgta tcaaaattga agagaatcat tatagcaaag ccacccaaca tagtgcagag      3480
     gaagacaata gtgaacttat tcacttaaca gaaaaaccaa taaacatttt taataaacaa      3540
     atcatattcg ttaaaacaga tcaaaataaa gtagaaaagt caacctattt cggtaaatca      3600
     attactacta ttttgtatga taaaatgaca agagaaagag caaaacaatt tttacttgac      3660
     catttcattt acaaatacat taccatgtat attatgagtg atgtagattt tgaacttata      3720
     caagcagcac ataaagaaat cattaatacc aattacacaa agattattcg aagcctcatc      3780
     ttattaaaga atgtacattc atatgcagaa tttaaagaaa tcatattgca atcacatgaa      3840
     aaactcttgc accccggtat ccaaaaaatg acaaagttat ttaaagaaaa ctactatttt      3900
     ccaaattgtc aacctctaat tcaaaacata ataaatgaat gctacttgtg taacttgacc      3960
     aagacagaac acagaaatac gaaaatgccg ttcaaaatta caccaaatcc tgaacactgt      4020
     cgagataaat ttgtaataga catctattca tctgaaggca aacactacat tagttgtatc      4080
     gacgtttact cgaaattcgc aacccttgaa caaattaaaa caaaagattg gatagagtgt      4140
     tgaaatgcat taatgcgaat ttttaatcaa ctaggcaagc ccatattatt aaaagcagat      4200
     agagacggcg cattctccag cttagccctt aagcgatggc ttgaaagtga ggagattgat      4260
     ttacaactta acacagccaa aaacggagta gcagatatag aaaggttaca taaaacaata      4320
     aacgaaaaaa ttcgaataat taattcatct aacgataagg aagctaaact aagcaaaatt      4380
     gaaaccattc tctacatata caatcacaaa actaagcatg acactactgg acccctgctc      4440
     acatttttct ttactctggt cgaccaatta tagacactca aaaaattaaa gagacgcaaa      4500
     tagaaaaaat aaatagtaac agacaagaat ttgatataga cactcgattt agaaaaggtc      4560
     ctctacagaa gggaaaattg gaaaacccat ttaaagcata caaaaatgta gaacaaatag      4620
     actccgatca ttataaaatc acaaatcgaa atagaatcac tcactactat aaaacacagt      4680
     ttaagaaaaa gaaaacgttt aataaagtcc caatttcaca ggaatctggc gtataatgat      4740
     gatgttactt ctattatttg ggacggtcca cacccaacaa attcgaataa acaacattga      4800
     caccaatcac gggtatctcc ttttttcaag taaaccaatt ccaataccat cagcatttga      4860
     acatcattgc ctaaaaatta atttatctga aattaacact ttgactactt actttggaca      4920
     taaaatacaa aacaacacag acacaccccg catgaaatat ctgtataata aattgcttaa      4980
     agaattaaac ggaataacta ttcaccaaaa aaatagacag aagcgtggac tattaaacgt      5040
     aataggttca tctcttaaat tcctatttgg tacacttgat gaaaatgatc gagtgcattt      5100
     tcaagaaaaa ttagattcaa ccgctaaaaa ttcaatacaa cttcatgaaa tgaacaatgt      5160
     tatacaattt atgaacgacg gactacaacg actaaaaaat tatgagaata atcgcaatag      5220
     tatcgacact cttgtatacg aacttatgca gttcattgaa tacatagaag acttagagat      5280
     gggcatgcaa ctctcacgct taggactttt caacccaaaa ctacgtgctt acgacaaatt      5340
     aaataacgtt aacagccaaa acatactact aattaaaaca tcaacttgga tgaattttaa      5400
     agacaacgaa ctactaatca tatcacacat acccattaac caaacactga tcaacacaat      5460
     taaaattatc ccttatccgg atcaaaacgg ataccagttg gattactcag accatgagtc      5520
     ttactttgaa aataaaaata aaatctttaa tcaagaaaat gaagaaataa ataatgattg      5580
     catcataaac ataatcaagc gtaaaaatcc aatttgcaat tttatttaaa tcccaacaaa      5640
     agaaatgatt aaatatgttg agccaaatat aattttaaca tggaatttaa cagaaactag      5700
     catagtagaa aactgtcaaa aattgaacaa caatgtcaag ataaagggaa acaaaattat      5760
     tactgtaaat caatgcagaa ttgaaattaa aaacattatc ttaagtaaaa attattttac      5820
     cccggaaata gacctaacac cgttatacgc accactggat ataattaaga taaagacgtt      5880
     aaaacacgat aacgttgtga atctaataaa caaaaataat accatatttt atatcatagt      5940
     aacacttatt attattgtac ttattatact atacggatta tcaaaatatg taacccaaaa      6000
     tccatttata attttatata ggaaaataag aaaacaatcg aaaacaaatc aagaacagcc      6060
     tcaagaaata gaaattgaac gaaatccatt acctccctta ttgtacccaa cagcatcagc      6120
     ctatgcatag gcttctcttt aaggggaggg aagtaacgta atta                       6164
//
ID   Gypsy-5_DSe-LTR repbase;    DNA;    INV; 421 BP.
XX
AC   AAKO01005017;
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   25-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DSe_;
KW   Gypsy-5_DSe-I; Gypsy-5_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-421
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAKO01005017; Positions    5267    4847.
XX
SQ   Sequence 421 BP; 135 A; 108 C; 62 G; 116 T; 0 other;
     tgccttcctc ataattcact tatacaaatg accgaccgcg atggtccgcc gcatcgatgc        60
     cttgttaaat aaacaaacat tttccgatat tgcgcaccca cttttaaata cacaaacgtt       120
     tcccgatatt gcgcacccac ttaagccgcg catccactta agccgaaatc agaacccagc       180
     cactaggcag gcacatagcc acgtagcaca taagaattct ttttcatatg tatgcacata       240
     agcataagta agaagatcaa gtaaacaacc cactaaccca gtacatctaa gattttctca       300
     caccaactgt ttcagtctta agctgatatt caatcaataa aaacgcaaag cggattcatt       360
     cggagttttt atttatttcg gcgttgatct tagttcaaat acggatcatt tattcgactc       420
     a                                                                       421
//
ID   Gypsy-5_DSer-I repbase;    DNA;    INV; 6183 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6183
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1981-1981 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. IDEFIX-type.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1314
FT                 /product="Gypsy-5_DSer-I_1p"
FT                 /translation="MATVQQLSELHLNQLLXQIKELHYYDGTPGKLSIFIN
FT                 QVDQLLTLYPTQDNRQAHIIYGAIKRVIVDNALEAVIQAGATXWXEIREAL
FT                 STSFKDHRPYVTLMKQLEETPYSGSISKFIQMLEAQHRNIFDKLELECNPV
FT                 IKSNYSDMLKWTIKSTIDKKLPDRMYMSLARKDIDTIPKLKQATMELGLYD
FT                 ANPEDMYFQKSHDXNRRNKGNKNLNNNQRYYNNKHNTNSYYSSTXQNNNQA
FT                 SNSNRNTQNRNPNNPTIVDPQVYHNFRNKLNQGRQNNPLNHQPSTSHXPSS
FT                 NGPVKRQRESSSGQTKMEVDVNFHQTASEISDTGEEVESVHM"
FT   CDS           1236..4727
FT                 /product="Gypsy-5_DSer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="NGGRCKFSSNCLGNLGHGRRGRISPYVRITYENNLYK
FT                 GMIDTGSSINIIRENFANLKETKENLKVYTIKGPIILTKSIMIKPNVVCPF
FT                 EQKFYVHNFSQKYDFLLGRQYLEDTKAKIDYEKETVTLGSKTYKFRYEDEK
FT                 GETASTRCLDPIKKGETASTRCLDPIKKGETASTRCLDPIKKGETTLKKCP
FT                 SPKDKKVNPKIKQKVEKTAPLKCLTPKSSKDAEDSDAMQSNPTSITDETIN
FT                 FAINNELRECNEFRLEHLNVEEKECLKKVLYQYRDIQYREGENLTFTSTIK
FT                 HVIQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIIRKSKSPYCSPIW
FT                 VVPKKADASGKPKFRLVVDYRNLNEITINDKFPIPRMDEILDKLGRCQYFT
FT                 TIDLAKGFHQIQMEEKSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMN
FT                 NLLEDLIYKDCLVYLDDIIIYSTSLEEHILSLKKVFGKLRDANLKLQLDKC
FT                 EFMRKETEFLGHIVTTNGIRPNPNKTNAITKFPLPKTPKQIKSFLGLCGFY
FT                 RKFIPNFAKVVKPMTLKLKKGAVIDTKCRDYVESFEKLKVLITSDPILIYP
FT                 DFSKPFSLTTDASNIAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELLA
FT                 IVWATKYFRSYLFGRPFEILSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDY
FT                 KIKYLPGKENYVADALSRTVIEEAMVGEIADSMDATIHSAAEDNLNYISIT
FT                 ERPLNYFSRQIEMVKGDVDAVNTSHYFQKLKIKITYKEMTIELAKNLIKEY
FT                 FCTKKSTIYFPDDGDFLIFQRAYIEIISPNCFTKLLRCTQKLTDILTYAEF
FT                 KDLILKKHKELLHPGIEKTINWFKEEYYYPDSQKLIQNIINECEVCNIAKT
FT                 EHRNTKLVFETTPEVLNAREKYVIDFYLTGNQIFLSCIDIYSKFATLIEVK
FT                 SRDWLEAKRALMKIFNDMGKPQEIKADKDSAFMCIALQNWLKSEGVNITIT
FT                 TSKNGVSDIERFHKTVNEKLRIIGSEQNIEDRCTKFETILYVYNHKTRHNT
FT                 TKRTPADIFLYAGSPDFNVQQNKINKIDQLNKNRHSYDVDTKYRQSPLVKS
FT                 KVTNPFKKTGQIRQVDDKHFEETNRGRKIVHYKSKFKKQKKTNKSKYDNSR
FT                 PVEED"
FT   CDS           4606..6153
FT                 /product="Gypsy-5_DSer-I_3p"
FT                 /note="env."
FT                 /translation="MINTSRKQTEAGKSYITSPSSRNKRKLTKVNTIIPDP
FT                 SKKIKRCPVSPIMIISLAIIALITVAQGNSIEVNTISAKNGYLLFQTGVTE
FT                 IPTSYEYHYLSINITNTMLMFENLLDEAKHFPDVIQIDYLVEKLKREINGL
FT                 RIIKRTKRGLVNIVGTAYKYLFGTLDQDDRDELESKINNLSENSVQNHDLN
FT                 MIIDVINSGIDIINKLEIENEKQQQVAVLIFNLQQFTEYIEDIEMGMQLTR
FT                 LGIFNPKLLKHDYLKQVNSEKMLKIKTSTWLKTDTNEILIISHVPTEITKV
FT                 PIFNIVPYPDESNYILTESIFDKFYIYEDKVYNTHTGKPIFDKCLIGIIKQ
FT                 EPTECKYTKTHKDFQINYVEPNILVTWNIPETIVNQNCINNRVSIHGNNII
FT                 KIKNCTMQIDEFIISNNLADFTQSIYIVNNITKIEPLAYIQTRDIIESHVK
FT                 YYSMFQIICLTSFVITILSLILYVSYKFKSIPKKLIVKYKKTQEEQPIPEQ
FT                 IVNDQIIPENNIMIYPTLSA"
XX
SQ   Sequence 6183 BP; 2427 A; 1139 C; 1050 G; 1555 T; 12 other;
     ggcgcagtcg gtaggatcaa aaattaaaat aatcctttca gtacggtatt ggtcaactta        60
     aaggataagc tatacaacta gctatccaga ccaacgaatt gawatagtga ttaaaaaatt       120
     gatccgcaaa agaatctacg tgcaagtagt attctaaatc gaaaaaatcc cgtgcggtcg       180
     gaaataaagt tcaaacccga atttttaatt ctgtgacttt taatacaacc aaaccaaaat       240
     cccgtgcggt cagaaataaa gttcaaatcc gaatttttta attctgtgac tttaaaataa       300
     aacaaaacca aaatggcaac agtgcaacaa ctctccgagc tacacctaaa tcaattgctg       360
     maccaaatta aggagctgca ttattatgat ggcacaccag ggaagctktc aatattcatc       420
     aaccaggtgg accagctgct aactctgtac ccaacacaag ataatcggca agctcacata       480
     atctacggcg ctataaaacg agtwatagtg gacaacgcct tagaagcagt aatccaagca       540
     ggagcaacaw catggakgga gatccgggaa gccctttcca cttcgttcaa ggatcacagg       600
     ccatatgtaa cactgatgaa acaactggag gagacaccat attcaggaag catcagtaag       660
     ttcatccaga tgctggaagc acagcatcgc aatatcttcg ataagctaga actagaatgt       720
     aatcccgtaa ttaagagcaa ttattccgat atgctaaaat ggactatcaa gtctacwatc       780
     gataagaaat taccagatmg aatgtacatg tcgttggctc gcaaggatat tgacactatc       840
     ccaaagttga aacaagccac tatggaactt ggtctttatg acgcaaatcc agaagatatg       900
     tattttcaaa aatctcacga twataatcgc aggaataagg gaaataaaaa tttaaataat       960
     aatcaaagat attacaataa caaacataac acaaattctt attattcgtc tacgtmtcaa      1020
     aataataatc aagccagtaa ctcgaatcga aacacccaga atcgaaaccc aaataaccct      1080
     actattgttg acccacaagt ctatcacaat tttaggaaca agttaaatca aggtaggcag      1140
     aataatccac taaaccatca gccctctact tcacacmacc cgagtagtaa cggtcccgtt      1200
     aaaagacaaa gagaaagtag tagtggacag actaaaatgg aggtagatgt aaattttcat      1260
     caaactgcct cggaaatctc ggacacggga gaagaggtag aatcagtcca tatgtaagaa      1320
     ttacatatga gaacaatctt tacaaaggta tgattgacac aggttcgtcc atcaatatca      1380
     ttagggagaa ttttgcaaat ttgaaggaaa ctaaagaaaa cctcaaggta tacacaatta      1440
     agggtccaat aatactaacg aaaagcataa tgattaaacc caatgtagta tgtccgtttg      1500
     aacaaaagtt ctatgtgcat aatttttctc aaaaatatga tttcctgtta ggtcgtcaat      1560
     acttagaaga taccaaagca aagattgatt atgagaagga gactgtaacc ttaggttcaa      1620
     aaacctataa attcagatac gaggatgaga agggcgagac cgcatcaact agatgccttg      1680
     acccaatcaa aaagggcgag accgcatcaa ctagatgcct tgacccaatc aaaaagggcg      1740
     agaccgcatc aactagatgc cttgacccaa tcaaaaaggg tgagaccaca ctaaaaaagt      1800
     gtcccagtcc aaaagacaaa aaggttaacc ccaaaatcaa acaaaaagtg gagaagaccg      1860
     cacccctaaa gtgccttact cccaaaagca gtaaagatgc cgaggattca gatgcaatgc      1920
     aatccaatcc tacatcgatt actgacgaaa caattaactt cgcgatcaat aatgaattac      1980
     gcgaatgtaa cgagtttagg ctcgaacacc tcaatgttga agaaaaggaa tgtttaaaga      2040
     aggtcctata ccaatataga gacattcagt acagagaagg tgagaatttg actttcacta      2100
     gtaccattaa acatgttatc caaactcaac atgaagatcc ggtttatcgc aaaccataca      2160
     aataccccca gagtgttgat caggaggtaa ataaacaaat taaggaaatg atagagcagg      2220
     gcattatccg aaaatctaag tccccctatt gttcacccat ttgggtagtt ccaaagaagg      2280
     cagacgcctc aggtaaaccg aaattcagat tagtagtcga ctataggaat cttaacgaaa      2340
     taacaataaa tgataaattt ccgattccta gaatggacga aatacttgac aaactgggaa      2400
     gatgtcagta ttttactact atcgatctag ctaaaggttt ccatcaaatt cagatggagg      2460
     aaaagtctat tgcaaaaaca gcgttttcaa ccaaacatgg gcattacgaa tatacccgca      2520
     tgccctttgg ccttaaaaat gcaccggcaa cttttcagag atgcatgaac aacttgttag      2580
     aagatttaat ctacaaggat tgtttggtat acttggatga tatcataatt tactccactt      2640
     cattggagga acatatttta tcattgaaga aagtctttgg aaaattaagg gacgctaact      2700
     taaaattgca gttagataaa tgtgagttca tgaggaagga aacagaattc ctaggacaca      2760
     ttgtcactac taacggaatt cggcctaacc caaacaaaac gaacgcaatc acaaaattcc      2820
     cattaccaaa aactcctaaa caaataaaat catttctagg attatgtgga ttctatcgca      2880
     agttcattcc taactttgct aaggtagtta aacctatgac cctaaagttg aaaaaaggag      2940
     cggtaatcga caccaaatgc agagattatg tagagtcatt tgaaaaacta aaggtattga      3000
     taacttcaga cccgatttta atctaccctg atttctcaaa acccttttcc ctaacaactg      3060
     acgctagcaa tatagcaatt ggtgctgttt tgtcacaaaa ccataagccc gtatgttacg      3120
     caagcagaac gctaaacgaa cacgaaataa actatgctac tatcgaaaaa gaattgttag      3180
     ctatagtttg ggcaactaaa tattttaggt catatctatt cggaaggcca tttgaaatat      3240
     taagtgatca caaaccattg gtgtggctta acaacataaa ggaacctaac atgaaactac      3300
     aaaggtggaa aatcaaattg aatgaatttg attacaaaat taagtatctt ccaggcaaag      3360
     aaaattatgt agcggatgct ctttcccgca cagtaataga ggaagccatg gttggcgaaa      3420
     ttgctgatag catggatgca acaattcata gcgctgctga agataactta aattacatct      3480
     ccatcaccga aagaccccta aactatttct ccagacaaat agaaatggta aaaggagatg      3540
     tagacgcagt taacacgagt cattactttc agaaattaaa aattaaaatc acatataaag      3600
     aaatgacaat cgagttagct aaaaacctca tcaaggaata tttttgcaca aagaaaagca      3660
     ctatttattt cccagatgac ggcgactttc tgatattcca aagggcatat atcgaaatca      3720
     taagccctaa ttgtttcaca aaattgctgc gatgtactca gaagttaact gatattctga      3780
     cgtatgcaga atttaaagat ctaatcttaa agaaacataa ggaactttta cacccaggta      3840
     tagaaaaaac cattaattgg tttaaagaag aatattacta tcctgacagt cagaaactca      3900
     ttcagaatat tatcaatgaa tgtgaagttt gcaatatagc taaaactgaa cataggaata      3960
     caaaacttgt attcgaaacg acacccgaag tcctaaacgc tagagaaaaa tacgtgattg      4020
     atttttatct aacagggaac caaatcttcc tatcctgcat agatatctat tcgaaatttg      4080
     ctaccctaat cgaagtaaag agtagagatt ggctagaagc aaaaagagcc ctcatgaaga      4140
     tatttaatga catgggaaaa ccgcaagaaa taaaagcaga taaagattca gcgtttatgt      4200
     gtatagcatt gcaaaactgg ctaaaatcag aaggtgtaaa tataaccatc acaacaagca      4260
     aaaacggtgt atccgatata gaaagattcc ataagacagt aaatgagaag ctgagaatta      4320
     ttggtagtga acaaaatata gaagatcgat gcacaaaatt tgaaacgatc ctatacgttt      4380
     ataatcacaa aacaaggcac aataccacca aaagaactcc agcagacatt tttctatacg      4440
     caggtagccc tgattttaat gtacaacaaa acaaaattaa caaaattgac cagctaaaca      4500
     aaaacagaca tagttatgat gttgatacga aatacaggca atcaccatta gtcaaaagta      4560
     aggtgaccaa cccgtttaag aaaacaggtc agattagaca agtggatgat aaacacttcg      4620
     aggaaacaaa cagaggcagg aaaatcgtac attacaagtc caagttcaag aaacaaaaga      4680
     aaactaacaa aagtaaatac gataattcca gacccgtcga agaagattaa aagatgcccc      4740
     gtatccccca taatgattat aagtctggca atcatcgctc tcatcaccgt agcccaaggc      4800
     aatagcatag aagtaaacac aataagtgct aagaatggat acctattatt tcagacagga      4860
     gttacggaga taccaacgag ttacgaatat cattacttaa gcataaacat aactaacacc      4920
     atgttaatgt ttgagaactt gttggatgaa gcgaaacatt ttcctgacgt aatccaaata      4980
     gattacttag ttgaaaaact aaaacgggaa ataaatggtt tgagaataat caagagaacc      5040
     aaacgaggtc tagtaaatat tgtaggaaca gcatacaaat atttatttgg cacactagat      5100
     caagacgaca gagatgagtt agaaagcaaa attaataact tgtcagaaaa ttccgttcag      5160
     aatcatgatt tgaatatgat tattgatgtg attaacagcg ggatagatat cattaacaaa      5220
     ttggaaattg aaaacgaaaa acaacaacag gtagcagtac ttattttcaa tttacaacaa      5280
     ttcactgagt atattgaaga catagaaatg ggtatgcaac tcacgagact gggaattttc      5340
     aatccgaaat tacttaagca tgattattta aagcaagtaa attccgagaa aatgctaaag      5400
     attaaaacat ccacttggct aaaaacagat acaaacgaaa ttttaataat ttcccatgtt      5460
     cctactgaga taacaaaagt cccaatattc aatatagttc catatcctga tgagtccaac      5520
     tacatcctta ctgaatccat atttgataag ttttatattt acgaagataa ggtctataat      5580
     acacacacag gtaaaccwat tttcgataag tgtttaatag gaattattaa acaagaacct      5640
     actgaatgta aatacactaa aacacacaaa gatttccaaa tcaattatgt tgaaccaaac      5700
     atattagtca cctggaacat tccggaaaca attgttaatc aaaattgtat caacaataga      5760
     gtttctatac atggaaacaa cattattaaa ataaagaatt gtactatgca aatagatgaa      5820
     ttcataattt caaacaacct tgcagatttt acacagtcaa tttatattgt aaacaacatt      5880
     accaaaatag aacctttggc atacatccag acaagagata taattgaatc ccatgtaaaa      5940
     tattacagca tgtttcaaat catatgtctt acatcctttg ttattacaat cctaagttta      6000
     atattgtatg tcagttataa atttaagagt atacctaaga aactcattgt taaatataag      6060
     aaaacacaag aagaacaacc gatcccggaa caaattgtaa atgatcagat cataccggaa      6120
     aataacatta tgatttatcc cacgttatcc gcctgaggac aggctaaatt caaaggttgg      6180
     ggg                                                                    6183
//
ID   Gypsy-5_DSer-LTR repbase;    DNA;    INV; 534 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-534
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1993-1993 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs. Inserted in (TA)n
CC   microsatellites. IDEFIX-type.
XX
SQ   Sequence 534 BP; 190 A; 115 C; 72 G; 156 T; 1 other;
     agtgacatat ccacagtccc atagacttta gcacatgcct acttattcca catatatgta        60
     cacccatgaa tcatcatcga atgaccataa agtcattgga caccacaact ccacacgagt       120
     tcgacagtag aataaacaca agtccccagt agtagactaa acaattttat tgtctaaaca       180
     tcctttccta tttgtcgcgt tcacacgctc aaagttcgga cccgttagct cgaaaacaaa       240
     attatcaaat ttcaaaagag cacttgtatc caagagcgaa tgcacttgaa tccaagagaa       300
     attaaataat caattaagct ctctcttaga atctttcgaa atcaatcaag atccacaaaa       360
     gctcgaaacc gaggtttgat cgtcacccat cctagttcaa taagttgagt tcagtttgag       420
     acacgaaatt attcggtcgg tgttcttcat acatacaaat atcttgtaac ttatttcggt       480
     taaataaaaa taaaatatat tttttttaac ttacgaaata mcaagtattt aatt             534
//
ID   Gypsy-5_DSim-I repbase;    DNA;    INV; 7577 BP.
XX
AC   .
XX
DT   03-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DSim_;
KW   Gypsy-5_DSim-LTR; Gypsy-5_DSim-I.
XX
NM   Gypsy-5_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7577
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1506-1506 (2012).
XX
RN   [3]
RP   1-7577
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [3]: ~99% identical to consensus. ORF3 overlap the 3'-LTR in
CC   several amino acids.
CC   >Env
CC   MIAAQLLHAQHVKENTPLAEINLGEARIIQTYS
CC   SVAHVIELTELTNHLNKLETNLYNLRDEDSKDSISSLQRKIVQAKEKVYSLTPNQRKKRGLINGLGHVIK
CC   RVTGNMDADDASAIATNFNKVFENEKTINKNLWQQIANNNDIILNFNNMSTHFVKEQEKIEEYINHFKNG
CC   ISKELMIEDKKIKSLQILNIINNNIDILQNHINDIAESVLLAKLRIFPSFILPIGELRDIAQSFKIQNFS
CC   INSEEHIYRLLDLEVESKRTQIIFHIKIPIFDKNIYTLSHLINLPINGSHFLILPKFILHDNNFNFTTSF
CC   QEKCPRIHGTYICDPRLAENIMYNKECVKQIKLGMKPSCEAKNVDTDEIVVEPEQQWIVVISRNQTWAEP
CC   SCAEPFLIEGTTIINHINCSILIDGVKYDDTELFYKEKIKLSLPAVKNITINATVENLNLDKIVFHLQEN
CC   NAKIVRVKQSTTDLRFLTYISAVILVIFIIYTLVVKRKITYLPNPAPSVNYVSPIPSLWPSLHSRGGGVT
CC   TSAIPTSSSPPPKPPRANC.
XX
FH   Key           Location/Qualifiers
FT   CDS           1344..2501
FT                 /product="Gypsy-5_DSim-I_1p"
FT                 /translation="MSQISKVKRLIPVTRSRARLSASLSDVREDQVALQAV
FT                 TRPSTSSAPSTMDTSSGSSQSTPIPSIISPLDICQSLKIPDGIRYLIPYEG
FT                 NPATLNDFINNVEEILLLIRGTDKTPYGQFLLRAIRNKIEGKANELLISSG
FT                 VGLNWDDIRDTLIRKFADKRSEETLNFELHGLVHKRLPLQEFFEQILDIKA
FT                 TYWRVIENTEIEKSALKFKKESFEKTCLYTFIHGIKGPLGATVRTSRPRTL
FT                 QEAYDVAIKERDIFLRESRNRQIQNPRYNNSSYNRNDYRRNEGPRDNRTNR
FT                 RPNYYGNYEARDQSSYRDKFRDNGRSYNKMKAIMPKQDDRSREDRNNQHSK
FT                 NYGNSGQQRPTPLNHIEATNEQELHNIDDGNFQLKASSDRRDT"
FT   CDS           2459..5980
FT                 /product="Gypsy-5_DSim-I_2p"
FT                 /translation="RKFSVKGLVGQTGYLEKVEVGDSLLYILINFGSNRPL
FT                 KFLVDTGATSSFINPELVKEQNQQILERPILITTALGSHKVNKMTQVKLFN
FT                 KYNCKENFPLLLFKFHNYFDGLIGMNTLNTMSGVIDIPSKTLMTPSFTIKL
FT                 FQQVKQKAKLFNIEESSKKLVMLPVSIKEGTFLCEDQQISNDLFITGGLYT
FT                 AHNYYSCMEVTNYSVNEKQLHLETPLEVNYLNTDEFIIINDVKDYGSVVSD
FT                 SKKDSNSKLRLEHLTLEEKTAFTKLHKQYPNIFYREGDKLTFTNIVKHNIN
FT                 TTDEIPVFKKSFRYSPSEKTEISEQINKLLEQDIIKHSYSPWSAPVFLVPK
FT                 KLDASNKRKWRLVVDFRLLNEKTIKDRYPMPQINEILDKLGRAQYFSALDL
FT                 ASGYHQIEVDPKDRPKTAFSAVGGHYEFIRMPFGLSNAPATFQRVMDNVLA
FT                 EYNGKFCLVYLDDIIVFSTSLEEHMNHLSSIFKKLTQANLKLQPDKSEFLK
FT                 KELEYLGHIVTEKGVKPNPKKIDTIKAFPMPKTRKEIKSFLGLLGYYRRFI
FT                 RDFAKITKPLTQQLKGKAEVTINEQYIKTFNHCKTLLCNDPILQYPDFNKP
FT                 FILTTDASNVAIGAVLSQGTIEKDRPIAFASRTLSESETHYATIKKELLAI
FT                 VWAVKYFRPYLFGNKFLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCE
FT                 VIYKKGSQNVVADALSRIVVELNTNETRPINIDSEILTSNKPINEFAIQII
FT                 LEVAELANDSVVTPFKNKIRRIIARPSFNDKIMIDILRTVLKSNKTHAIYT
FT                 TDSIFETVQKIYATFFAPNKLYKIIRSTTYLKELQTTEDQINYISDYHIRN
FT                 NHRGMDETYNHIKRQVYFPGLREKISKLINKCDICQTLKYDRQPQKLEFQL
FT                 TETPNKPLDIIHIDIYSINKRLILTIIDKFSKFAEGYTLPARXXINITKNM
FT                 MFFFKTHGIPKVIVCDQGPEFAGILFKDLCNQYGITLHVTSFQQSSSNAPV
FT                 ERLHSSLTEIYRIIFEKKKALQLDLDHDLIMAETFITYNNAIHSTTKLTPH
FT                 EVFTGRTHIFEQTLKAVSQQDYXRELETFRTKLYPELKEELENQKLKKIEK
FT                 LNVDRTPPLEVQEGDTIFRKENGRNKLTPRFTKHKVASDNGITLTTNXRQK
FT                 IHKSKIKKKTRRNSD"
FT   CDS           6016..7575
FT                 /product="Gypsy-5_DSim-I_3p"
FT                 /note="ENV."
FT                 /translation="MIAAQLLHVQHVKENTPLAEINLGEARIIQTYSSVAH
FT                 VIELTELTNYLNKLETNLYNLRDEDSKDSISSLQRKIVQAKEKVYSLTPNQ
FT                 RKKRGLINGLGHVIKRVTGNMDADDASTIATNFNKVFENEKTINKNLWQQI
FT                 ANNNDIILNFNNMSTHFVKEQEKIEEYINHFKNGISKELMIEDKKIKSLQI
FT                 LNIINNNIDILQNHINDIAESVLLAKLRIFPSFILPIGELRDIAQSFKIQN
FT                 FSINSEEHIYRLLDLEVESKRTQIIFHIKIPIFDKNIYTLSHLINLPINGS
FT                 HFLILPKFILHDNNFNFTTSFQEKCPRIHGTYICDPRLAENIMYNKECVKQ
FT                 IKLGMKPSCEAKNVDTDEIVVEPEQQWIVVISRNQTWAEPSCAEPFLIEGT
FT                 TIINHINCSILIDGVKYDDTELFYKEKIKLSLPAVKNITINATVENLNLDK
FT                 IVFHLQENNAKIVRVKQSTTDLRFLTYISAVILVIFIIYTLVVKRKITYLP
FT                 NPAPSVNYVSPIPSLWPSLHSRGG"
XX
SQ   Sequence 7577 BP; 2875 A; 1435 C; 1327 G; 1935 T; 5 other;
     ggcgcagtcg gaatccgaac caatgcagct cctctgcagt gtaattattt gcaagtgagt        60
     agagtgagaa ttgagatgcc aaaatgtata taaaaaaaaa cacaagccct tatacacaca       120
     atcaaatgcc aaagtgtaca cacacaaata agtgccacaa tatatacatt acataaataa       180
     attctacaag taaaaagtaa aacaaagtaa caagattatt atttcaaatg tacccgaaag       240
     aaaagtgatg caaaatgctc tacagtgaaa ctgcaaatta gtgtctgacc acgaaagagt       300
     tcaaatagaa caaatttgtt ggtcggaata tatagtaaat acacctgggc atataaggtt       360
     caaagagagc aattatggtg cccagagtaa aaatgaattg caaatcaaaa aaataagtta       420
     cattcatgtc taatagacca aaatatgtac aagtgcatgt ttgaggctca aggtcgagca       480
     taataagtga accgcgtcaa acctgtgcga aagcaattca gcagcgacga cacactggcg       540
     tgtcgagcgg ttgcgttgct gttcaaacgg gttacagccg gtcgagcatg tgttcgaaac       600
     aactcaacag tgacgataca ctggcgtgtc aaacggttgg gtcgatggtt cgagcagatt       660
     gctaacgacc gggtgtgcac aagttcgaaa cagctcaaca gtgacgatac actggcgtgt       720
     caaacggttg ggttgtggtt cgaacaagta gccgactgag tacagtttga aagcgattca       780
     acggccacga tacactggcg tgtcgagcag ttgagttggg ttcgaacaag ttgcgctaat       840
     tattttattt ataattaggt ctgcggtact ctagcggggt tgactctcaa tcattagact       900
     tacaataaat gcaaccaaca ctgcctattg gcaaataatc aatgtggcaa cgacaagtaa       960
     taacaaatat acaagcattc ttttctttca ctcccaatat tgagtaaata aaatagagta      1020
     ttgacttata ttaataaacc tataattaca gttctacacg aggacaaaaa cacatctaac      1080
     aatccaacaa caacattacc ttcgccacga cgaatacatc aaactcaata attaattaat      1140
     ctcaattggt atcttacaca cattcatatt ttctttttca atttcatata tacacaatta      1200
     ttttaaaata gatttaacac aacatattac acatacacca tatttaagtt tacacgtaca      1260
     attaagttca atacacaatt acatttataa caacatttaa acacaccatt attcacaatt      1320
     aaaggatttc tctaagagag taaatgtctc agatttcaaa agtcaaaaga cttattccgg      1380
     taactagaag tagagctcgg ttgagtgcaa gtctttcaga cgttagggaa gatcaggtgg      1440
     ccttacaagc cgttactagg ccctctacca gtagtgcccc tagcacgatg gatacttctt      1500
     ctggctcaag ccaatccaca ccaatacctt ccataatttc ccctctggac atttgtcaat      1560
     ctttaaaaat tccggatggt attcgttatc tcattccgta tgaagggaat ccagctaccc      1620
     taaatgactt tataaacaat gtcgaggaaa tcctgcttct tattagaggc acggataaga      1680
     ctccgtatgg gcagttttta ttaagagcaa taaggaacaa gatagaagga aaggcaaatg      1740
     agctattaat atcgtcaggc gtaggcttaa actgggacga cattagagat accctaataa      1800
     ggaaattcgc ggacaaaaga agtgaggaaa cactaaattt tgagttgcac ggactggtac      1860
     ataaaagatt gccactgcag gaatttttcg aacaaatttt agacatcaag gcaacgtact      1920
     ggagagtgat agaaaacact gagatagaga agtcagcttt aaaatttaaa aaggaatcct      1980
     ttgaaaaaac ctgtttgtat acatttatac atggcatcaa aggtccatta ggagcgactg      2040
     ttagaacctc tagacccaga accctccagg aagcctatga cgtggctatc aaagaaaggg      2100
     atatttttct gagagaaagt cgcaataggc aaatacagaa cccaagatac aataatagca      2160
     gctacaacag aaacgactat cgtagaaatg aaggaccccg ggataacaga actaatagga      2220
     gaccaaacta ctatggaaat tatgaagcta gggatcaatc ttcgtatcgc gataaattca      2280
     gggataatgg caggtcttat aataaaatga aggcgatcat gccaaaacaa gacgacagaa      2340
     gtcgtgagga cagaaataat caacattcaa agaattatgg aaattcggga cagcaaagac      2400
     caacaccact gaatcacata gaagcgacaa atgaacagga gctacacaat attgatgacg      2460
     gaaattttca gttaaaggcc tcgtcggaca gacgggatac ttagagaaag ttgaagttgg      2520
     agattcccta ctttacattt taattaattt cggttcaaat agaccactaa aatttctagt      2580
     ggatactggt gccacttcat ctttcataaa tccagaactc gttaaagaac agaaccaaca      2640
     aatacttgag agaccgattt taattaccac agccctaggc tctcataaag taaataaaat      2700
     gacccaagtc aagctattca ataaatacaa ctgtaaagaa aattttccat tgttgctctt      2760
     caaatttcac aactattttg atggccttat aggcatgaat actctgaata caatgtcagg      2820
     agtaatagac attccgagca aaactctaat gacacccagc ttcacaatta aacttttcca      2880
     acaagtaaag caaaaagcaa aattatttaa cattgaggaa tcttccaaga aattggtaat      2940
     gctaccagtt tcaattaagg aaggtacatt tttgtgtgaa gatcaacaaa tttcgaacga      3000
     tttatttatc acaggtggat tatacacagc ccacaattat tacagttgta tggaagtgac      3060
     aaattactct gttaatgaaa aacaattaca tttagagaca ccattggaag tgaactatct      3120
     taacacggac gaatttataa taataaacga tgttaaggac tatggctcgg tagtttcgga      3180
     cagtaagaaa gacagtaaca gcaaactaag attagaacat ttaaccttag aagaaaaaac      3240
     tgcattcaca aaactacaca aacaatatcc aaatatattt tacagagagg gagataaatt      3300
     aacctttacc aatattgtca aacacaatat taatactaca gacgaaatcc ctgtattcaa      3360
     aaaatcgttc agatatagtc cgtcagaaaa gacagaaata agcgaacaaa tcaataaact      3420
     tctggaacaa gatataatta aacacagtta ttcaccctgg agtgctccag ttttcttggt      3480
     cccaaagaaa ctagacgctt caaacaaacg aaagtggaga ttggtcgtag actttagatt      3540
     gctaaatgaa aagactatca aagatagata tccaatgcca caaataaacg aaatactaga      3600
     caaactaggc agggcccagt atttttcagc cttagatttg gcaagtggtt accaccaaat      3660
     tgaagtggac cctaaggata gaccgaaaac agcattttcc gcagtaggtg gacattatga      3720
     gttcattcga atgccatttg gcttatccaa tgcacccgca accttccaaa gggtaatgga      3780
     taatgtttta gcagagtata atggcaagtt ttgtttggtc tatctagatg atataatagt      3840
     attttcgacc tcgcttgagg agcacatgaa tcatctaagt tctattttca agaaactcac      3900
     gcaggcaaat ctaaaacttc agccggataa atcagagttt ctaaagaaag aattagagta      3960
     tcttggtcac attgtgacag agaaaggtgt taaacctaac ccaaagaaaa tagatacgat      4020
     taaggctttc cctatgccca agaccaggaa agagattaaa tcattcttgg ggttactggg      4080
     atattataga agattcatca gggacttcgc caaaattaca aaacctctga cccagcaact      4140
     aaaagggaaa gcagaagtaa ctatcaacga acaatatatt aaaactttta accactgcaa      4200
     gacacttttg tgtaacgacc caatactaca gtacccagat ttcaataagc catttatctt      4260
     gactaccgac gctagtaatg tagctatagg agcagtttta tcacagggta caatagaaaa      4320
     ggacagaccc atagcatttg ctagtaggac attgtcagaa tcagaaacgc attacgccac      4380
     cattaaaaaa gaactactgg ctatagtatg ggcagtgaaa tattttagac catacttatt      4440
     tgggaacaaa ttccttctgg tcactgacca taaaccttta gtttggttaa aaaatctaaa      4500
     agaaccaaac tccatgctag tgagatggaa actccaacta ttagaatatg actgtgaagt      4560
     catttataaa aaaggttccc aaaatgtagt ggcggatgca ttgagtagaa ttgtcgtaga      4620
     gctcaacacc aacgagacca gaccaattaa catagattcg gaaattttaa cctccaacaa      4680
     acccataaat gaatttgcaa tacaaatcat tttggaagtt gcagaacttg caaacgattc      4740
     agtagtaacc ccttttaaaa acaaaatcag acgcattatc gccagacctt cgttcaacga      4800
     caaaataatg attgacatat taaggacagt cttaaaatcg aataaaacgc atgcaattta      4860
     caccactgat tcaattttcg aaacagtaca aaagatttat gcaacatttt ttgctcctaa      4920
     caaattgtat aagatcataa ggagcacgac gtatttaaaa gaattacaaa ctacagaaga      4980
     tcagattaac tacatatcag attatcacat tagaaataat catagaggta tggacgaaac      5040
     atataatcat attaagcgac aggtctattt ccccgggtta agagaaaaga tttcaaaact      5100
     tattaacaaa tgtgacattt gtcaaactct aaagtatgac agacaacctc agaaattaga      5160
     atttcagtta acagagacac cgaacaagcc attagacata atacatatag acatatactc      5220
     gattaataaa agacttattt taacgataat cgacaaattc tcaaaattcg cggaaggtta      5280
     cactctacct gctcgasatk caattaatat caccaaaaac atgatgttct ttttcaagac      5340
     tcacggtata cccaaagtaa tagtttgcga tcagggtcca gaattcgcgg gaattctttt      5400
     taaagatctt tgcaaccaat atggtataac cctacatgta acatctttcc aacaatcaag      5460
     cagcaacgcc cctgtagaaa ggctgcattc atcgttaaca gaaatctata gaatcatttt      5520
     cgaaaagaaa aaagcactac aacttgacct agaccacgac ctgataatgg cagagacctt      5580
     tataacctat aataatgcta ttcactcaac aacaaagctt accccacacg aagtatttac      5640
     aggacgaact catattttcg aacaaacgct caaagcggtg agtcaacaag attactwgag      5700
     ggaactagag acctttagaa ccaaattata tccagaatta aaggaggaat tagaaaatca      5760
     gaaactaaaa aagatcgaga aacttaacgt mgatagaacc ccacccttag aggtacaaga      5820
     gggagacaca atcttcagaa aagaaaatgg aagaaacaaa ttaacaccca gattcaccaa      5880
     acacaaggta gctagtgata acggaataac tttgactacc aacawgagac agaaaataca      5940
     caaatcaaag attaagaaaa agactagacg taatagtgac taacttctgt ataataatat      6000
     cgttacagat tatgcatgat agcagctcaa ctgcttcatg tccaacatgt taaggaaaat      6060
     acgcccctag cagaaatcaa tctgggagaa gcgaggatca ttcagaccta tagttcagtg      6120
     gcacatgtaa tagaactaac ggaattgact aactacctaa ataaactaga aaccaactta      6180
     tacaacttac gggacgaaga ttcgaaggat tcgatatctt cattacaaag gaaaatagtt      6240
     caagctaaag aaaaagttta ctcactgact ccaaaccaaa gaaagaagag aggtttgata      6300
     aatgggttag gtcacgtaat taaaagagta acaggaaata tggatgcaga tgacgcatcc      6360
     actattgcaa ccaatttcaa caaggtattt gaaaacgaaa agaccattaa caaaaacctc      6420
     tggcaacaaa tagccaataa taacgatata attttaaatt tcaataatat gtccacacac      6480
     tttgttaaag aacaagaaaa gattgaggag tacattaatc attttaaaaa tggcatttct      6540
     aaggaattaa tgatagaaga taagaaaatc aaaagtttac aaatattaaa tataataaat      6600
     aacaatatag acattcttca gaatcatata aatgatatag ccgagagtgt gttattagct      6660
     aaactcagga tattcccaag ttttatttta cctataggag agctaagaga tattgcacag      6720
     agcttcaaaa ttcaaaattt ttcaattaat tccgaagaac atatatacag actactcgac      6780
     ttagaggtgg aatccaaaag aacacaaatc atttttcaca taaaaatacc tatatttgat      6840
     aagaacatct atacactatc tcatttaatt aacttaccca taaacggctc tcactttctc      6900
     attctaccta aattcatttt gcacgataac aattttaatt ttacaacgag ttttcaagag      6960
     aaatgcccga ggatacatgg aacttatatc tgtgacccca gattggcgga gaatattatg      7020
     tacaacaagg agtgtgttaa acagattaaa ttaggaatga aaccaagctg cgaggcaaag      7080
     aatgtggaca ccgacgaaat agtggtggag ccggagcaac agtggatcgt agtcatcagc      7140
     aggaaccaaa cgtgggccga accgagttgt gcagaaccct tcctcattga gggaacaaca      7200
     attattaacc atatcaactg ttccatactc atcgatggag tcaaatatga cgacaccgaa      7260
     ttattttaca aggaaaagat caaactgtca ctaccggcag tcaaaaacat aacaataaat      7320
     gcgacagtgg agaatttgaa tcttgataag atcgtgtttc acctccaaga aaacaacgca      7380
     aaaattgttc gagtcaagca atctacaacc gatcttcgat tcctgaccta catatcggct      7440
     gtcatcctgg tcatctttat aatctatacc ttggtagtaa aaagaaagat cacttactta      7500
     cccaatcctg caccatcggt caactacgtt tcgcccattc cttcgttatg gccgtcacta      7560
     cattctaggg ggggagg                                                     7577
//
ID   Gypsy-5_DSim-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   03-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DSim_;
KW   Gypsy-5_DSim-LTR; Gypsy-5_DSim-I.
XX
NM   Gypsy-5_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-400
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1507-1507 (2012).
XX
RN   [3]
RP   1-400
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 400 BP; 118 A; 121 C; 66 G; 94 T; 1 other;
     agttaccaca tcagctatac ccacatcctc ttccccgccc cctaagcctc cacgagcaaa        60
     ctgttagcgt cagcacccac atwcacgagc cgcctccacc cccaattcct gcaacatagt       120
     tcgtcgtact cttgtgcaag agtacaagcc gcttcagacg acaactcagc aaacggaaac       180
     tctccccaaa tctgctgggt cagcagatcg gcgatcacca gcgggccact tggattcttt       240
     taagttagac ataaaatcag ttttaagcta cccattgtcg aataaagagc ctttgtcatt       300
     ctttccaaaa aaaaacacat ttattcttgg gaacttggac aaattctgga agtttgcaga       360
     agcatcaccc gggacactcc acctacaata taatataact                             400
//
ID   Gypsy-5_DTa-I repbase;    DNA;    INV; 7380 BP.
XX
AC   AFFI01009389;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DTa_;
KW   Gypsy-5_DTa-LTR; Gypsy-5_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7380
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009389; Positions     795    8174.
XX
CC   Positions [4845-5354] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           912..2492
FT                 /product="Gypsy-5_DTa-I_3p"
FT                 /translation="MPVSRSCENISILGNSGNTESPECYLCLQIIEFSAQL
FT                 LTTGCGHTFHRACFSSRIGHRKVCPVCATSFQTSTGSLLNESRGELASSVF
FT                 NPEMPVSTRANPNSDLDSAAAGSSTVGPSRSRIPAPNTAVPGDLGAGIQTP
FT                 VDDNRSEEMDVNAGQESQSPSPSLHQLQQTVADAMAAASIRQTEVLSDTSL
FT                 KQAELLSKAITSGFRELLASLPSHIRTGSQEPPPPLITQPAPFVDSNAIGS
FT                 MSPIPMDIRPERVSQILVNWKLRYSGRGPMSVDEFIYRIEALTYQTLGGNF
FT                 ELLTRYISNLFEGSASDWYWRYHKSARNIEWPAFKRAMLIQFKDERTDVNI
FT                 RAAIDRRKQKQNESFDEFYEAIVTLADKMTIPLSESSLLESLRANLLPEIQ
FT                 HELLYERVLSISQLRHLVRTREVFMQTVNPNQALKPRPTPRKFVNAVENSA
FT                 ELESEEIDEEIEAINLVCWNCRGNGHRYQDCVEDRRVFCYGCGQADTYRPT
FT                 CHKCSASKNVQKRVPQKGTRKQTISTATNTD"
FT   CDS           2504..3826
FT                 /product="Gypsy-5_DTa-I_2p"
FT                 /translation="MTISQNSHVNTCSPSTAVTREHRSKELTGLAKRKIRS
FT                 QERKGDYMNRNGQEEMDLVSAIIAPDVRPYAEVTLIGRTLTGLMDTGASIS
FT                 CIGGEFARDLQESHFPFKSISADVRTAGGQNQKVIGKVTTQVKFKDQNKLI
FT                 TLYIVPSLVQPLYLGINFWKEFGLLPDSLVEEKACVDEINNCDELEMSDRQ
FT                 RPLSEEQFLELNKAIQSFPSFAEKGLGKTSLLSHSIDVGDAKPIKQRHYPV
FT                 SPAIEKLMYEELDRMLGLGVIEESNSAWSSPVVLVKKPGKVRLCIDSRRVN
FT                 EVTRKDAYPMPFIDGILSRLPKAEYISSLDLKDAYWQIPLEPGSRDKTAFT
FT                 VPGRALYQFTVMPFGLSNAPSTMSKLMDRIIPANLRNEVFIYLDDLLIISD
FT                 TFRRHISVLLELADKLKEAGLTINVQKSRFLRTRGPLPRTYSRIRNH"
FT   CDS           3907..4851
FT                 /product="Gypsy-5_DTa-I_1p"
FT                 /translation="MTGWYHKFIKNYASIASPLTDALTQKRQFAWSNEADG
FT                 AFLALKEAMCKAPVLHTPDFSEPFFIHCDASHSGVGGVLMQVNKDGDEVPI
FT                 AFMSRKLNKCQRSYSVTEKECLAAILSIKKFRAYVEGHQFTVITDHASLKW
FT                 LMTQTDLSSRLARWALKLQGYYFTIKHRKGSQNIVPDALSRVFTEDCSEMA
FT                 AISAVDLQSEHFDSEEYKSLRAKVSSTLNLTPDLKIVGKHIFRRTEHPIGE
FT                 KIADEKCWKLWIPNNLIPATLKDAHEHPLSAHGGINKTLDRIRAYYFWPKL
FT                 LKDVREYVNACENVNALSIQTEL"
XX
SQ   Sequence 7380 BP; 2335 A; 1440 C; 1613 G; 1992 T; 0 other;
     gtaaatataa tatatatatt tataaatctg gcgcccaacg tggggcaaga attgctatag        60
     caagcaattc aaccggcacg ccacaatata aaaatagttg ttgaaatgtt acagtcatca       120
     aacattattt cgcattttca gatatactag ttgaaaaatt ctgaattcgg agaggtcaat       180
     aatagctctg gaaaattttt catttgagtc aacttatgat aaaccgagca ttattgaaat       240
     aaatccttta tccgagggta ggcaaggagt tctggatcac cgtttccatg ccaatctcag       300
     atcattaaag actagttggc gattttgttt taggagaatt gttttttctg ttttatacat       360
     atgtcacttg gcaagttgac atcatccgct caagtaaccg tgcgttttca agaagcagtg       420
     gatattactt gttttggaag tatgatgtta gtggtattta atcacacaag tgtctgtagt       480
     cagtggactg cagttttgtc cgtctgttct agttatttct ctgattccaa ataataactt       540
     aattaaaact gaggaaaagg tgaacaatat tatgatagca gaggataaga tgttaggtgt       600
     ttataaacct tcttcgaccg tgttaaccat tttaaatatt tgcagaattt acctctaaac       660
     ttggtgttac aaaagtttgg aatcttacat ttaaaataag aaaaaaaata aaaaaatcaa       720
     gagaaaaggt taccattcaa tatcctgtta attaggcagg gtccccaaaa gcttaaaata       780
     aatatttttt tctttttcat tattattgat agttattttg gcagaagcat agtgaacgtg       840
     agtctttgga aaatagtagg agagtatatt aaaatatata ttaaaataaa gttgtcccag       900
     taccattaga aatgccagta tcgcgcagtt gtgaaaatat atccatttta ggaaattctg       960
     ggaacacaga aagtccagag tgttatcttt gcttacaaat aatcgaattt tcggcacaac      1020
     tgttgacaac tgggtgtggg cacacctttc acagagcgtg tttcagtagc aggataggcc      1080
     atagaaaagt ttgtcctgta tgcgcgactt cctttcagac ttcgacaggt agtttgctta      1140
     acgaatcaag aggagagtta gctagctctg tgttcaatcc tgaaatgcca gttagtacga      1200
     gagcaaatcc caattcagac ctggactcgg ctgccgcagg tagttcgacg gtaggtcctt      1260
     cgaggtcaag aatcccggcc ccaaatacag ccgtcccggg agatttagga gcaggtattc      1320
     aaaccccagt ggatgacaac agatctgagg agatggatgt caacgcaggg caggaaagtc      1380
     aaagtccatc cccatctttg catcagctcc aacaaacagt agcggatgcc atggcagccg      1440
     catcgataag acagaccgag gttctatccg atacctcact taaacaggca gagctactgt      1500
     ccaaagccat aacatcaggg tttcgagagt tgctggcttc ccttccatct catataagaa      1560
     ccggaagtca ggaacctccg ccacctttaa ttacgcaacc agcaccattc gtagactcaa      1620
     acgcaatagg ttccatgtca ccaattccga tggatattag gccagagcgt gttagtcaga      1680
     ttttggtgaa ttggaaatta agatattctg gtcgtggacc tatgtcagta gatgaattta      1740
     tatatagaat agaggcccta acttatcaga ctttaggtgg caactttgag ttgttgacac      1800
     gttacataag taatcttttt gaaggaagtg ccagcgattg gtactggcgc tatcacaaga      1860
     gtgctagaaa tattgagtgg cctgcattta aaagggctat gttaattcag ttcaaagatg      1920
     aaagaaccga tgtaaatatt cgcgctgcta tagataggag aaagcaaaaa caaaatgaat      1980
     catttgatga attctacgaa gcgatagtga cgttagcaga taaaatgact atcccattgt      2040
     ctgagtcctc attactagaa tccctgcgtg ctaatttgtt accggaaatt cagcacgagt      2100
     tgctttatga gcgagtgtta agtatttcac agttgcgtca tctagttagg actagggaag      2160
     tattcatgca gacggtaaat ccaaatcaag cgcttaagcc tagacccacg cctaggaaat      2220
     ttgtaaatgc agtggaaaat tctgcagagc ttgaatcgga agaaatagat gaagaaatag      2280
     aggcgattaa tctggtttgc tggaactgtc gtggcaacgg gcaccgttac caagactgcg      2340
     ttgaggatag acgagtattt tgctatgggt gtggccaagc ggatacatat cgtccgactt      2400
     gccacaagtg tagcgcatca aaaaacgttc aaaagcgtgt accgcagaaa ggtacacgca      2460
     aacagacgat ttcgacagcc accaacacgg attaactaaa aacatgacga tctcccaaaa      2520
     ctctcatgta aacacatgtt caccttctac ggcagttaca cgcgagcacc gtagtaagga      2580
     gttgacagga ttagcgaaac gaaaaatccg atcgcaagaa cgaaagggag attacatgaa      2640
     taggaacgga caagaagaga tggatttagt atcagctata atagctccgg atgtcagacc      2700
     ttatgccgaa gttacgctga taggtagaac attgacgggg ttaatggata caggcgcttc      2760
     aataagctgc attgggggag aatttgccag agatttacaa gaatctcatt ttcccttcaa      2820
     atctatttcg gccgatgttc gaaccgccgg aggtcaaaac caaaaagtca tcgggaaagt      2880
     taccactcag gttaagttta aggatcaaaa taaattgata acgttatata tagttccgtc      2940
     attagtacaa cccttatatt taggtataaa tttctggaaa gaatttggat tgctacccga      3000
     ttcgttggta gaagaaaagg catgcgtaga cgagataaac aattgcgatg aattagaaat      3060
     gtccgatcgt cagagaccat tgtctgagga gcaattcttg gagcttaata aagccattca      3120
     aagttttcca tcattcgcgg aaaaaggtct aggaaagact tcgctgttgt cacatagtat      3180
     agatgtagga gacgcaaagc caattaaaca gcggcactat cccgtgtcac cggccataga      3240
     aaagctcatg tacgaggaac tcgaccgtat gttgggccta ggagtcattg aggagtcaaa      3300
     cagtgcctgg tcttcgccag tagtgttagt caaaaaacca ggtaaagtta ggctgtgtat      3360
     agacagtagg cgagtcaatg aggtaacccg caaagatgca taccctatgc catttataga      3420
     tgggattcta agtcggttgc caaaggcaga atacatctcg agcctggatc tcaaggatgc      3480
     ctattggcag atacccttag aaccaggatc gagggacaaa acggctttta cagtaccagg      3540
     acgagcactg tatcagttca ccgtaatgcc ttttggatta agcaatgcgc cttccacaat      3600
     gtccaagctg atggatcgta ttataccggc caacttaagg aacgaggtgt tcatctattt      3660
     ggacgatctc cttattattt ctgatacgtt ccggcgtcat attagcgtcc ttctggaatt      3720
     ggcagataaa cttaaagagg cagggttaac aattaatgtg cagaaaagta gatttttgcg      3780
     tacccgaggt ccattaccta ggacatatag taggatacgg aaccattagc atggattcag      3840
     ctaagattga ggctattaaa gactacccaa tacccaagtc cgtgaagcag ttacggattt      3900
     ctaggtatga ctggatggta ccataaattt ataaagaatt atgcgtccat tgcgtcaccg      3960
     ttaactgacg cgttaacgca aaaacgtcaa ttcgcctggt caaatgaagc tgatggtgcg      4020
     ttcctggctc tgaaggaggc tatgtgtaaa gccccagtgc tacacacacc agatttttcc      4080
     gagccattct ttattcactg cgacgccagc cactcaggag ttggtggtgt ccttatgcag      4140
     gtcaataagg atggcgatga ggtccctata gcgtttatgt cgaggaagct caataaatgt      4200
     cagcgttcct attccgttac tgaaaaggaa tgcctggctg ccattctcag tataaagaaa      4260
     tttcgggcct atgtggaggg gcatcagttt acagtaatca cggaccatgc atccctgaag      4320
     tggctgatga ctcaaaccga tctcagtagt agactcgcta ggtgggcctt gaaactgcaa      4380
     ggttattact ttacaattaa acaccggaaa ggttcccaga acatagttcc cgacgcgctg      4440
     tcccgagtgt ttaccgaaga ctgctcggaa atggcagcta tatcggcagt cgatttacaa      4500
     tcagaacact ttgattcaga agaatataaa tctctaaggg ctaaagttag ctcaactcta      4560
     aatctaaccc ccgatctaaa gatcgtaggg aaacatattt ttcgtcgtac agaacatcct      4620
     atcggagaga aaatagccga tgagaaatgt tggaagctgt ggatccctaa taatctaata      4680
     ccagccacgt taaaagacgc tcatgaacat ccgttatcag cgcacggtgg cattaacaag      4740
     acccttgacc gaattcgtgc atactacttt tggccaaagc tgctgaaaga tgtaagggaa      4800
     tacgttaatg cgtgtgaaaa tgtaaatgca ctaagtatcc aaacagagct ttaagaccgc      4860
     ctttggcccg gtctggggaa gctgagaggt tttttcagaa aatttatgta gattttcttg      4920
     ggccttatcc aagaagtaaa gcgggaaata ttggcatcct tgtggtgcta gatcacttat      4980
     ctaaatttcc ttttattaag ccggtaaaga aatttactac agatgcgatt ttgccttaca      5040
     ttgaggagga cctgtttcac tgttttgggg tgcctgaggt agttctgtcg gacaacggcg      5100
     tacagtttaa gtcgcacgcg tttaacgccc ttttgcaaaa gtatggtgta cagcatgcgt      5160
     atacggccgt ttattcgccg caagcaaatg cttcagaaag agtaaatagg tccattctgg      5220
     ccgccataaa ggcttatata caccccgatc aatccaattg ggacgtccaa cttagcagca      5280
     ttgcttgtgc gttgcgatcg tccacacata gtgccgtaaa atctagccct tatcgattag      5340
     cttttggaca gcaaatgatc accagcggag agacataccc attactaaaa ggattggagc      5400
     tgctagaaga ccgagacata caattctcaa aagaagattc gtttgaaatc ctcagaaaag      5460
     ccgccaccga tggaatgcgt aaacaacatg atcgcaatga gaggacctac aatttacgaa      5520
     gcagaatagt atcatttagg cctggtcagg aggtttttcg taggaacttc caacagagtt      5580
     gttttgtaaa aggatttaac gcaaagcttg ccccaatatt tgttaaagcg cgagtgagga      5640
     gaaaactagg tcaggcgtac tatgaattgg aagatttaca gggcaaactg gttggaaagt      5700
     ttcatgcaaa agatattaaa caataaataa tcaagcttac aatcgctcca agctagtatc      5760
     accctttggt ttttccccaa agtgtgattt tggtgggggg gatttgtaat gtaccttgtc      5820
     gctcttttgt ccaccaaaat aaataagcct agaagcagac tttaattttt gtttgtccca      5880
     cttgggttac caaagagaat gaatcgctgc caagctcagc tcaaaaaggt tgcactcaag      5940
     agaaattctg gaatcaaaat tacatgggag taccgtgggt tggcagacaa aaatggcgat      6000
     ctttttcgaa atttggggaa attttggtta catgaggttc tgacccgcga gtatcggtct      6060
     tttctaattc taacgccagc caaggcagac gtgcatatct cgagcaaagt caaaaagtta      6120
     attcaaagtg ccagccagtc aaagattaga aaagttatta ataatcgtgg gttataccat      6180
     attgggtaag aaaataaatc ggctgtcgtc cccaaaatta ggcaatgctg accttagtca      6240
     attttattta ggtacccagg tgcaaaagca cacctttatt ctcccagcca ttggtttttc      6300
     catcaatacg ctccgacatc cagacgttcc aggcaaagct cagctttccc gaaagagatc      6360
     ggcccaagca gcggccagag aggagagggg cttcagtttt tattaccagc gcaaacgcaa      6420
     cggtcgcagc tccgacgctg ctccgcgccg aggccgcaaa aagtcggaaa acggcggaaa      6480
     accgcccggg aaataccgct catcgtcgta cgaaaagtcc ggcgtaatcc acgttttttt      6540
     tagtgtgaaa atctaataat tgcctgaata agtaactgac ctacgttaaa gtacagtggc      6600
     ctctcctatg agcatctccg gttgctggct ttctgtgtaa ttttaccttt aaatggtatt      6660
     attccaaaag tacgccactg tactcttccc ccttatgatt atctcaggtt tctttttcta      6720
     cattttttag ttaaattata ttttttctta atacttaaat ttaattcctt aaaatgcgca      6780
     cacgcaaata taaagaaata aaagcccatt tgtgagtgtg tatgcgagcg gtatagcaac      6840
     gccagaaaat cagtgaagaa aattctaata taaacgtaaa ttaatatttg gtaaaagaaa      6900
     atgaaaccaa tcaagtaaag ttatagcttt agtcatgttt aagaaaaaaa gaagatcaat      6960
     ttggtgaggt tcttgtgtcg tgcggtgaaa catatgtatt attaacattt cagcgaattt      7020
     cagtgacaac gttctacgaa gaaagcgctt tccttgccgg atgttcaatg agtgagtcac      7080
     cctgcttatt ttatatattt ttataaattg cctaaagaaa atccccgacc agaatttccg      7140
     accaaataac aaaagccgag aggtcaaaat tgaattaaaa taatgaaaac ttaaaacgaa      7200
     attgaaatga acgaaaatta aaatagaaaa gaaaacatga agtgaatgaa gtagaattta      7260
     aaagaaaaga accgcacaga aaagaatgaa gtaagaacta tagaaataaa acagaatgat      7320
     ttgtgccgta atacgaattc gccgcaagtt tcgcgaattc gccgcttaag cattgccaaa      7380
//
ID   Gypsy-5_DTa-LTR repbase;    DNA;    INV; 791 BP.
XX
AC   AFFI01009389;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DTa_;
KW   Gypsy-5_DTa-I; Gypsy-5_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-791
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009389; Positions       4     794.
XX
SQ   Sequence 791 BP; 220 A; 143 C; 137 G; 291 T; 0 other;
     tgtaaagtca atggaatcca cttaggttcc acaaccctga ccactggttg tatttacttt        60
     tctcatacac acgggttaat ttccttcttt ttaattacat atattaaatt tatttttgcc       120
     cccttatttt gttactattt aaatactata ttgccattat gattatatta ttatatttta       180
     gataactatt atatttctat atctataaat ttatattctg ttaattcctt gcgtaaaata       240
     gcgattgtgg gtgggaatac gccctgtaga attatgtcag cagtacattt aaatattcta       300
     tgttaataaa tgaattttat aatgaatttt gagtagaccg ccaattagct aaaggggaca       360
     tgccgataac aggagatgtg ggggtaacat agagggttaa taccctcatt tagggatcac       420
     accctagcta tgggacggtg tgatcatgga agggtgggca cttgtggttg caacaacatc       480
     ttgccacatt cttgagattt ttattttttc ctttgtaacc attttcattt cctaacttca       540
     attctaagca aatctcccaa aatattcgtc agtccgaatt gcgttaccgt cgacttattc       600
     ttgcacgtga tcgatttaat gataatatat ttatgtgtat ttctttgtgg agataatggg       660
     ctgtatatca acggactcga cgactagccg gaaccatcac gtggtccgca cgatatacga       720
     attgtcatct gctcttcctt ttggaaaata ttaagttttc tgggatctcc ctctgtacgt       780
     tacatgctac a                                                            791
//
ID   Gypsy-5_DVir-I repbase;    DNA;    INV; 5948 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DVir_;
KW   Gypsy-5_DVir-LTR; Gypsy-5_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5948
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1815-1815 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2089-2550] - Reverse transcriptase
CC   Positions [3754-4227] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..1342
FT                 /product="Gypsy-5_DVir-I_2p"
FT                 /translation="MNKLNDQNLNQLLQQIRNVPAFEGDPITLGPFIRRMD
FT                 YLLQLYSTHNERQQCIIFGAIELQISGDAQKVPRMLQINNWSQLREALISE
FT                 YKTQTPVEELLRRLYNTNYQGNLRKFCSEVEAKIIIITDKLELEGNLDNSR
FT                 LYTNAMHNTVKNLINKKLPDRLFMSLARHDISTISKLKQVAQMEGYYEENY
FT                 YNNNKKQNTNNAINYTGNTKPQFTPSYITNNNQSHNFSHHPPNNQTYFNQN
FT                 KQLAQEFKQNLQQAQINNPINQNISQGRYIPNQPYKRIRENTSGSQKMQVD
FT                 ENYQQSENYQGNYVQEEYGCQNNQYEVFQNNEIKDENFPIGASGQAST"
FT   CDS           1405..4515
FT                 /product="Gypsy-5_DVir-I_1p"
FT                 /translation="MMRENFLNIPVYTRPTSIRTMTGISNLNHYVSTAPNK
FT                 LFRQDQIFYIHDFSPHYDILLGRNLLKANNAIIDYAHDRIIISERSFNQKK
FT                 LVWDPNSEKNFEAYLKPESYTLEINYAISNEITSGEDYRVDHLNVEEKSKL
FT                 LKLLKNFSDIQYREGDNLTFTSIVKHEINTHHENPIYKKPYGYPFAFEQEV
FT                 EKQIKDMLTQGIIRHSQSPYCSPLWIVPKKADASGKAKFRLVVDYRGLNDI
FT                 TINDKFPIPNMDEILGKLGRCSYFTTIDLAKGFHQIEMDKNSINKTAFSTK
FT                 YGHYEYTRMPFGLKNAPATFQRCMNHVLRDLINKHCLVYLDDIIVFSTSLE
FT                 EHLNSINKVFEKLRQANLKLQLDKCEFLKKETEFLGHIISPEGIRPNKLKV
FT                 KAIQEFPLPKTSKEIKSFLGLCGYYRKFIPDFAKIAKPMTLYLKKAAKIDI
FT                 KNVEYNKAFEKLKILIINDPILVCPDFNKKFQVTTDASNFAIGAVLSQDNK
FT                 PISFSSRTLNDHEQNYSTIEKELLAIVWAVKYFRPYLYGRPFDILSDHKPL
FT                 VWLNNIKEPNMKLQRWRIKLSEYNFSIKYLEGKLNHVADALSRIKIEENML
FT                 GEQDINTQATAHSAEEDNENLIHLTEKPLNYFRRQIEMIRSDTEQIEVAPY
FT                 FKKLRIKIEYLNLNIEKAKQILIKHFCNNSSVLYIEYDSDFEIIQQAFKEI
FT                 MNPKTTRILRTNIKLKDIRSYAEFKEIIVSNHKKLLHPGIEKMVRLFKETY
FT                 YYPDYQNLIQNIINECEVCNLAKIDHRNTSCKFKITPEVENCRETYVVDIY
FT                 SIKNHSYLTCIDLYSKFANVIELNGKDWMEVKRGLIQIFNNMGKPITLKAD
FT                 RDSAFMSLALKEWLNKEKVEIQITTSKNGVADIERLHKTINEKIRIINTDD
FT                 DEENRLMKIEVILYTYNHKLKHNSTGRTPADIFIYAGTPNYNTQIIKETRI
FT                 NNLNKNRNDFAVNTKFRKAPIIHGKLHNPYKPTGKIEQIDEDHFEETNRGI
FT                 YRRTKFQNRTITFIFLALMMSTYYQEVITSL"
XX
SQ   Sequence 5948 BP; 2493 A; 1001 C; 889 G; 1565 T; 0 other;
     aacttataac tacgttattg gcgcagccgg taggatagca ttttgtgaaa agaaataaat        60
     taaagttcgt gagtgatacg atcaattaaa gagaggctta tccatacaac tggtgtcttc       120
     tctgatcaac aagtgtaatt gtgcacagta ttacaactaa atcgaatata tttcaactcc       180
     aaaattcgct atccgcaaaa gaacttaacg tgtgaaaaca attcaagcaa cgtataaatc       240
     caattcggtc gttgcaacaa agtgaatttc gtgacacaaa ctggagcaac cagaaggctc       300
     tcatgtggct gcacttgcag caatgaataa attaaacgac caaaatttaa accaattgct       360
     tcaacaaata cggaacgtgc cagcctttga gggagaccct ataaccctgg gtccatttat       420
     cagaaggatg gattacctgc ttcaactgta ctctactcac aatgaacgac aacaatgcat       480
     catattcggg gcgattgagc tccagatatc cggagatgcc cagaaggttc ctagaatgct       540
     gcaaatcaac aactggtccc aactgaggga agccttaatc tccgaataca agacgcaaac       600
     acccgtggaa gaactactgc gaagactata taataccaat tatcaaggta atttacgtaa       660
     attttgtagt gaggtagagg ctaagataat aattataact gacaagttag aattagaagg       720
     gaatttagat aattccagat tgtacacaaa cgctatgcat aacactgtaa aaaacttgat       780
     aaataaaaaa ttaccagata gactctttat gtcactcgca agacatgata tatccactat       840
     ttccaaatta aaacaagtag ctcaaatgga gggctactat gaggaaaatt attataacaa       900
     taataaaaaa caaaatacta acaatgctat aaattataca ggcaatacta aacctcaatt       960
     taccccaagt tacataacta acaataatca aagccacaat ttttcacatc accctccgaa      1020
     caaccaaact tattttaacc aaaataagca actagctcaa gaattcaaac agaatttaca      1080
     acaagcacaa ataaataacc ccataaatca aaatatttct caaggtagat atataccaaa      1140
     tcaaccgtac aagcgtatac gagaaaatac tagtggttcc caaaaaatgc aggttgatga      1200
     aaattatcaa caatccgaaa actatcaggg taactatgta caagaagagt atggttgtca      1260
     gaacaaccaa tatgaggtgt ttcagaataa tgaaataaaa gacgaaaatt ttccaattgg      1320
     agcctcggga caagccagta catagaaatt aaaattaata acagacgcta cagatgtctc      1380
     attgacactg ggtcgtcaat aaatatgatg agggaaaact tccttaatat accagtttat      1440
     acaagaccta cttcgattag aaccatgaca gggatatcaa acctaaacca ttatgtatcc      1500
     actgcaccta ataaactctt taggcaagat cagatatttt acatacatga tttttcacct      1560
     cattatgata tacttttagg cagaaattta ttaaaggcaa acaacgccat aattgactac      1620
     gctcatgaca gaataataat tagcgagaga tcgttcaatc agaagaaatt agtttgggat      1680
     ccaaattcag aaaaaaactt cgaagcatat ttaaagccag aaagttatac actagaaatt      1740
     aattacgcaa taagtaatga aataacatcg ggagaagatt accgagttga tcatctaaac      1800
     gttgaagaaa aatcaaaact attaaaatta ctgaaaaatt tcagtgacat tcaatatcga      1860
     gaaggtgaca atttgacctt cacgagcatt gttaagcacg aaattaatac acatcatgaa      1920
     aatccaattt acaagaaacc atacggttac cctttcgctt tcgaacaaga agtcgaaaag      1980
     caaattaaag atatgctaac ccaaggtatt attcggcata gccagtcgcc ttattgtagt      2040
     cccttatgga tcgtaccaaa aaaggcagac gcctcaggaa aggcaaaatt tagattagtg      2100
     gtcgattaca gaggattaaa cgacattaca atcaatgata aattccccat tccaaacatg      2160
     gacgagattt tgggaaaatt aggaagatgt tcatacttta caacaataga tttagcaaaa      2220
     ggtttccatc agattgagat ggacaagaac tcaattaata aaacagcatt ttctaccaaa      2280
     tacggacatt acgagtatac tcgaatgcca tttggactta aaaatgcacc agcaacattc      2340
     caaaggtgca tgaatcacgt tcttcgtgat ttaattaaca agcattgtct tgtttatttg      2400
     gacgacatta ttgtcttctc cacatcactt gaagaacatt taaattcaat aaataaagtt      2460
     tttgaaaaat taagacaggc aaatttgaaa cttcaattag ataagtgcga gtttttaaaa      2520
     aaggaaacag aattcttagg ccatattata agtccagaag gcatacggcc aaacaaattg      2580
     aaagtaaaag caatacaaga atttcctttg ccaaaaacat caaaggaaat taaatcattt      2640
     ctaggtttat gtggttatta tcgaaagttc attccagatt ttgcaaaaat tgcaaaaccc      2700
     atgactcttt acctaaagaa agcggcaaaa attgatatca aaaatgttga atacaataaa      2760
     gcctttgaaa aattaaaaat attaattata aacgacccaa tattagtatg tccagacttt      2820
     aataaaaagt ttcaggtaac aaccgacgca agtaattttg caataggagc tgtgttgtca      2880
     caagataaca agccaattag tttctcaagt agaacgttaa acgatcatga acaaaattac      2940
     agtacaatag aaaaagagct tttagcaata gtgtgggcag taaaatattt tcgcccatat      3000
     ttatatggca gaccatttga cattttaagc gatcataagc cactcgtttg gctaaacaac      3060
     attaaagaac ccaacatgaa attacaacgt tggcgtatta aacttagtga atataatttc      3120
     tcaatcaaat acttagaagg aaaattaaac cacgtagcag atgctttatc acgcatcaaa      3180
     attgaagaaa atatgctagg cgaacaagat attaacacac aagctacagc acatagcgct      3240
     gaagaagata atgaaaattt aatacattta acagaaaaac cattaaacta ttttagaaga      3300
     caaatagaaa tgattagaag tgataccgag caaatagaag ttgcaccata ttttaaaaaa      3360
     ttaagaataa aaatcgaata tttaaactta aacattgaaa aagctaaaca gatattgata      3420
     aaacattttt gcaacaattc aagcgtatta tacattgaat acgattccga ttttgagata      3480
     atacaacaag cctttaaaga aataatgaac cccaaaacaa ctcgaatatt acgaacaaat      3540
     attaaactga aagacattag gagctatgca gaatttaaag aaataatagt tagcaaccac      3600
     aagaaacttt tacatccagg catcgaaaag atggtcagac tttttaaaga aacatattat      3660
     tacccagact atcaaaattt aatccaaaac ataattaacg aatgtgaagt ttgtaatcta      3720
     gctaaaattg atcacaggaa cacatcttgt aaatttaaaa ttacaccaga agtagaaaac      3780
     tgtagagaaa cttacgtagt agacatttat tcaataaaaa accacagcta tttaacatgt      3840
     attgatttat attcaaaatt tgcaaatgta attgaactta acggcaagga ttggatggaa      3900
     gttaaaagag gactcatcca aatatttaac aacatgggaa aacctataac tctgaaggca      3960
     gatagggaca gtgcttttat gagtcttgcc ctgaaagaat ggttgaataa ggaaaaagtt      4020
     gaaattcaaa taacaacaag taaaaatggt gtagcggata tagaaagact acataagaca      4080
     attaatgaaa aaatacgcat tataaatact gacgatgacg aagaaaatag actcatgaaa      4140
     attgaggtaa ttttatacac ttataatcat aagctaaaac ataactctac tggaagaact      4200
     ccagctgaca ttttcattta cgcaggtaca cctaattata atacccaaat tataaaagag      4260
     accagaataa ataatcttaa taaaaaccga aatgatttcg cagtaaatac aaagtttagg      4320
     aaagcaccca taattcacgg taaattacat aacccttaca aacccactgg gaaaatagaa      4380
     caaattgacg aagatcattt tgaggagact aacagaggta tttacaggag gacgaagttc      4440
     caaaacagga ctataacatt catttttctg gcactaatga tgtcaacata ttaccaggaa      4500
     gtaataacca gtttatagat attaacccta ttaaatcaaa taatggatac ttactcttta      4560
     aaataggcat gatagacata cccgataatt acgagcacca ctgcctcaca ataaatttaa      4620
     caaagacaga agacacatat gacaaactaa tgttacagac aaacaaatat aaggacagaa      4680
     tacaaattca atatttgaca gaaaagttgc aaagagaaat aaacggtatc cgaatagtaa      4740
     aaagaagtaa gagaggatta cttaatttcg taggaacaac atacaaatac ttgtttggaa      4800
     ctctagataa caacgataag gaggaacttg aagaaaaaat gaattcaata gctcaaaata      4860
     gtattcaaat aaacgaactc aaccatgtta ttgaagcggt caaccaagga atagaaatag      4920
     taaacaaaga aagagaagaa agagaagaat ttaaagtact ggaactactt gcattcaact      4980
     tacaacaatt cacagaatag attgaagatt tagaaatggg aatgcaacta actagattgg      5040
     gaatttttaa tccaaaatta ttaaaacacg actatctcac aaacgttaat tccgaaaagc      5100
     tacttaacat aaaaacatct acttggctta gatcagatac gaatgaaatt ttgattattt      5160
     cacacattcc tagagaaata aataaaaccc cattatacga aattctaccc tacccggacg      5220
     atgataaaaa tattttacaa gacgaaacac aatacaaata ctactcacat aataataatt      5280
     tatacaacaa ggacaagaaa aaattaacta ttaaccaatg catattaggt ataataaaac      5340
     aaactaacac tagttgcaga ttttcaaaaa cacatctaat aacacaaact aactatatcg      5400
     aaccaaatat acttataaca tggaacttac ccaaaatcac attgaatcaa aactgtatta      5460
     aaaatgatat cttaattgag ggaaataaca taataaaaat tcataattgc tcagcaatac      5520
     ttaatgagat atctataagc aatttgaact cagactacac acagagtata tacgtaagaa      5580
     ataatattac taaattaaag ccactttcgt acattcaaac aaaagaaata attttcgaaa      5640
     atattaaaga aatgaaaatg ctccaaatta taataattac agtatttgta atcatcatat      5700
     taatcataat aatgtatcta gcatataagt ttaaaaatat acccaaacaa atatttatta      5760
     agaaagtaaa tgttattgat caaccacctg cacaactccc agttgaactt gaaatcgaaa      5820
     atgaacaaga aaatttaaat atgttaccaa aattgtatcc tagcatttaa agaatatttt      5880
     ttattatact tacctttttc atatacccta cacgcgtgag gacacgcttt gtttttagtg      5940
     gggaggag                                                               5948
//
ID   Gypsy-5_DVir-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DVir_;
KW   Gypsy-5_DVir-I; Gypsy-5_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-404
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1816-1816 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 404 BP; 145 A; 90 C; 57 G; 112 T; 0 other;
     tgacatattc acaacaacag cattttgaac cactgttatt cataagctaa ttgcatggca        60
     taacccattg tgtgtttaca aactgaataa tcataacaat aacatgcctt ctgcatccga       120
     attcaaataa cgctaacagc agcaaaaatc ctaagagcag aatgccttct gcagccaagc       180
     tcacatattg tcaacaatca tttataaaca aaaactgatc aacagaaagg cgctagcata       240
     aacaagctgc agccgctgtc cctttgcaaa aagtcacgta ctccaattat tatttagctt       300
     taaatatagc gtaagccaat tttggtagct cagtcttact ccagatattc aacataataa       360
     accgatacag attcacggtc gggaaatata gttttttatt tcca                        404
//
ID   Gypsy-5_DWil-I repbase;    DNA;    INV; 7554 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DWil_;
KW   Gypsy-5_DWil-LTR; Gypsy-5_DWil-I.
XX
NM   Gypsy-5_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-7554
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-7554
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2307..3563
FT                 /product="Gypsy-5_DWil-I_1p"
FT                 /translation="MVTWDDIIEKARIHAQELTKSCKCLSQNRETSQDTVT
FT                 KHTKIITENLQAIRAVLTEHYSKLKTWQKTAANAFYSDCKQKAITVLNRHN
FT                 IEFKQTSDLETSIVLEEKTQLMADEEISQEEPSVISRNKPTIPKENNKMAQ
FT                 TRVEFINTATKLIPYFDGDSKSLPGFIGALRVLDTIKEPHEAVAIQLIKSK
FT                 LKGQAANSLSSEETIDEVIQRLSTIFKGDSVDLLTAKIKNLQRNPNNCVSY
FT                 TNEITELTDALKGAYISDGLPTEQAIKYTTKVAVNAMVGHTKSPRVQLLME
FT                 SGHFQSAKEAITRFTTLSVESGSTGSFQNNTIFYAQHNDRGRRRYNNNGNW
FT                 RNNSNWNNNNSNWRNNDAHRAQRGRNYSRYQRGGRGGGHNNNRQNTNNQPN
FT                 GYNNTNVRITQSDQGNGQDPPNAQN"
FT   CDS           3479..7183
FT                 /product="Gypsy-5_DWil-I_2p"
FT                 /translation="PTEWLQQHKCPNYPKRPGKRTRSSKCSKLKNKVYSIN
FT                 LSLNNFVSFKNVKTNKKITFLIDTGADISIIKENSDVFHDIQVNKTVDIRG
FT                 IGEGVIKSKGLASIELQTDKYIIPYKFHILHEDFAIPCDGIIGLDFMKRFN
FT                 CQLDYNSSEDWLIIRPPNLTYPIYVPITFNSGNNSTLLPARSQVVRKIELS
FT                 SAEDNILIPNQEIKPGVYVANTIATAQSTFVRFLNTTDKCQIVGVNNIKFE
FT                 SLSNYDIVQNTKDIRKESVIHKLKKNFPILFKDKLEKLCTEYSDVFGLDTE
FT                 PITTNNFYKQKLRLKDDEPVYVKNYRSPHSQLNEIQRQVGKLIEQGIVEPS
FT                 VSPYNSPLLLVPKKTLSGSKEKNWRLVIDYRQINKKLLSDKFPLPRIDDIL
FT                 DQLGRAKYFSCLDLMSGFHQIELEEKSRDITSFSTSNGSYRFTRLPFGLKI
FT                 APNSFQRMMTIAFSGLEPSQAFLYMDDLIVIGCSEQHMIKNLVDVFKLCRK
FT                 NNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDTKFDVIKNYPVPHDADSA
FT                 RRFVAFCNYYRRFIKNFAEYSRHITRLCKKNVPFEWTAECENAFQYLKEKL
FT                 VQPNLLQYPDFSKEFCIITDASKQACGAVLTQNYNGLQLPVSYASRAFTKG
FT                 ESNKSTTEQELAAIHWAITYFRPYIYGKHFTVRTDHRPLTYLFSMVNPSSK
FT                 LTRMRLELEEYDFTVEYLRGKDNFVADALSRITISDLIDMNKRILKVTTRY
FT                 QSRQNNFCAENKQELLPRQNLEKASKPNVFDVIVNDEVRKVVTLRITDSST
FT                 TFKHGKKVIARIDICDIYTNGILDLGQFFQRLEKEAGILSITKVKVAPSEK
FT                 IFETISIESFKNMGNQILQFLRVALLTPVTLIQNDEEKEAILSTFHEDPIQ
FT                 GGHTGINKTIAKIKRRYYWKNMTKYVKKYINKCPKCLTSKTTKHTRSPMII
FT                 TETPQYAFDRVIVDTIGPLPRSENGNEYAITLICDLTKYLVAIPVANKSAT
FT                 TVAKAIVESFILKYGPMKTFITDMGTEYKNSIINDLCKYLKIDNITSTAHH
FT                 HQTLGTVERSHRTFNEYIRSYISVDKTDWDIWLQYFVYCFNTTPSVTHNYC
FT                 PYELVFGRQSNLPIQFNSVNTIDPIYNIEDYSKEVKFRLENACKRARILLE
FT                 KNKIKQKEINDSKVLDFKIEIGDQVYLKNETGHKLESSYIGPFEVISIEKN
FT                 NNVVIKNRKNREQKVHKDRLKRNNK"
XX
SQ   Sequence 7554 BP; 3009 A; 1385 C; 1239 G; 1920 T; 1 other;
     tggcgaccgt gacaggacac taaaggacct acaaggactc tccatgctaa caacagcaac        60
     aataaaaaaa aaaccaagaa aatttcaaca aaacaaacaa aaaaaaaagc ataaaacaat       120
     gtctcacaat gtgttgcaac tactttagcg atagagagca gcattagcag cagcagcaag       180
     cagtctggca accctgttcc agttccagct caccccccac ccggatttta aaccaacaat       240
     ctttataaaa aacaaagaat tcaattgaac gttttaagcg ccaaaaacaa caaattcccg       300
     ccccccgtca agtatccatc ttttcggcag tggcgttcga aatcgaccaa tcaaccaaca       360
     aggagcacga atgaacagtg aagatattcc ctttgcggaa tctgctccta tcgagcaaag       420
     ggatgcaccg acgctagagg aagcgttaga gctgtatccc aacgatggac cgcgcccact       480
     cacaatagct gagtaccggg cccgcaacac aaaatctaca aagccagagc caaagaagac       540
     caaaagagga ggccaaatac acaagctact ccagcagaag aggctggaag tagacttact       600
     ggccactctg aagacggagg aagaccgaca acgctgcata gagcgtattg acatcctgaa       660
     agctgaactt cgccaaagag cgaagaaacg caagggggcc gcagaaatgc gcaagcctta       720
     acttgccttt aatttaataa ttctaattat aagcttaata gcaagttgga gcacgaaagt       780
     gcaatttgcg aactactaac tcactgctag gctattacta acaatgtggt tggagaattt       840
     tttttaaaaa aaaaataaaa caaatgaaat gtatacctga attgtgagcc aaccacatac       900
     tctataattt ttccacgtct ccggctcgct gtgcaagaca cagttgagat aaattttatt       960
     tctctcttat tttttttttc tcttcacaaa aaatttaaat aaaaaaaaaa tatgcatgaa      1020
     tccataacaa ttttattaat aaaattaaag taattgctaa acaaaagttt ttaacctgtc      1080
     tttatgaact ttatttcata ttttgcacac ttgtaataaa taaaaamaaa aatcccatac      1140
     gtatgttcga taatagcata agtaaatttg atgacatatc cgatataccc acaatggggt      1200
     taatcgaaac aaaatcagtg gactccactg cgaatgtcat aaataaaatt gaatcatcaa      1260
     atgctgatat gagattaacg aacatactac tattaataat tgtcataata ttgtgcgcat      1320
     atgtattata taaggcttac ctattacaca ataaatgtgt aacaaaaaga gctctaagcc      1380
     aagctaatga tctagataag atctaaaaat acatatgcac acaagcaatt ttaaatcaaa      1440
     acctttttaa caaaagataa aatatatata tatatatata taaaaaaaaa aataaaaaaa      1500
     aataaaaatg acccattgtg acaggtactt tgaaaaaata aacaacaggc accctagcat      1560
     agtccaagac ttaattgagg tttttagaag cgagggaagt acctcacctc aacgctccat      1620
     aaacttagta caaattaggt tagcttacct tgatataacg ggcgaagatt tcccagtcaa      1680
     aggaggcact agggtacaga tgagtttcat tctcacggta ccatatgtat gctgtttttc      1740
     aaacgcagca ggcacactgc gtttctacct aatggaggaa ccgaagcagt aaagaactaa      1800
     atacatccat aatcagttaa ataggcttag gcagttagtg tagaatatgg ataaagcaga      1860
     aacaaaaaag ctccaaaaat atttaccttt ccttgatttc ctgatacaat caggtgaaac      1920
     aaatcacaaa tacaaggaaa taaggtattg gatagcccac aactacaaat ttcgaaaaaa      1980
     cattgtagat cttatggaaa aatccataaa agtagcttat agtagattat tagctaagac      2040
     tcctttaaga aaagacgtgc ccggatgggt ccacgaactt ttcaaggact caattgcgct      2100
     gataaacata tcggaatcga gtgtagaacc aatagattta acagactcag atatagaaat      2160
     aatagacata gaatagtaaa accttacaca ttttcaaaat ctttttctta aattaacaac      2220
     aggtctaaac gacaaattcc ttttttgttt agtaaaatgg gttctcaaga atccaaaata      2280
     gaaatagaaa ttaatcttaa caaactatgg ttacttggga tgatataata gaaaaagcta      2340
     gaatacacgc acaagaatta actaaatctt gtaagtgtct ctcgcagaat agagaaacat      2400
     cccaagacac agtaaccaaa cacacgaaga taataaccga gaatcttcaa gctattagag      2460
     cggtattaac tgaacactac agcaaactaa agacatggca aaaaacagcc gcaaatgcgt      2520
     tctacagtga ttgcaaacaa aaagcaataa ctgtgctaaa cagacacaat attgaattca      2580
     aacaaacatc tgatttggaa acttcaatag tactggaaga aaaaacgcaa ctaatggctg      2640
     atgaagaaat aagtcaagaa gaaccatcag tgataagtcg taacaaacca acaattccca      2700
     aagaaaacaa caaaatggca caaacgaggg tagaattcat aaatacagcc accaagctga      2760
     taccatactt cgatggtgat agtaaaagtc taccaggttt cattggagcg cttcgcgttc      2820
     ttgacaccat aaaagaaccg cacgaagcgg tagccatcca actgataaaa tcaaaattaa      2880
     aaggtcaagc ggctaatagc ctaagctcag aagaaacgat tgatgaagtt atacaaagac      2940
     tatcaacaat cttcaagggt gactcagtag atcttttaac agcaaaaatt aaaaatctgc      3000
     agagaaaccc caataactgt gtttcataca caaacgaaat tactgagttg accgatgccc      3060
     ttaaaggcgc ttatatttcg gatggtcttc caactgaaca agcaataaaa tacaccacca      3120
     aagtggcggt aaatgctatg gtaggtcata ccaaaagtcc aagagtccaa ttattaatgg      3180
     aatcaggaca ctttcaatca gccaaagaag caatcaccag atttaccact ctttcagtag      3240
     agtcgggttc caccggaagt ttccaaaata ataccatttt ttatgcccag cataatgacc      3300
     gcggcagacg ccgctataac aataatggta actggagaaa caactcgaat tggaacaata      3360
     acaactcgaa ttggagaaat aatgatgccc acagagccca acgaggccga aattattcac      3420
     gctaccaaag aggcggccgt ggaggtggac acaataataa tagacaaaat acaaataacc      3480
     aaccgaatgg ttacaacaac acaaatgtcc gaattaccca aagcgaccag ggaaacggac      3540
     aagatcctcc aaatgctcaa aattaaaaaa taaagtctat tccattaacc taagtcttaa      3600
     taatttcgta tcatttaaga atgttaaaac aaataagaaa ataacattct taattgatac      3660
     cggtgcagac atttcaataa taaaagaaaa ttctgatgta tttcacgaca tccaagtaaa      3720
     caaaactgta gacattcgag gcataggaga aggagtaata aaatccaaag gactagcctc      3780
     aattgagcta caaacagaca aatacattat tccatataaa tttcatatac ttcatgaaga      3840
     tttcgcaatc ccctgcgatg gaataatagg actagatttc atgaaaagat ttaattgcca      3900
     attagattac aatagttccg aggattggtt aataattaga ccaccaaatt taacgtaccc      3960
     aatttatgtt ccaataacat tcaattctgg taataactca acacttctac cagcaagatc      4020
     ccaagtggta cgcaaaatag aactatcttc agcagaagat aacattttaa ttccgaatca      4080
     ggaaattaaa ccgggcgttt atgttgcaaa cactattgca acagcccaaa gtacttttgt      4140
     ccgattttta aataccacag ataaatgcca aatagtaggc gttaacaata taaaatttga      4200
     atcactttcg aactacgata tagttcaaaa taccaaagat ataagaaaag aatctgtaat      4260
     tcataaattg aagaaaaatt tcccaatact attcaaagac aaactcgaaa agttatgcac      4320
     tgagtatagt gatgtgttcg gacttgacac cgaaccgatc acaacaaata atttttataa      4380
     acaaaaatta agacttaagg atgatgaacc ggtatatgtg aaaaattacc ggagtccgca      4440
     tagccaacta aacgagatcc agcgacaagt tggaaagtta atcgaacagg gtattgttga      4500
     accatctgtt tcgccttata atagcccact cttgctagtc ccaaagaaaa cactttcggg      4560
     atctaaagaa aaaaactggc gattagtaat tgactatcgt caaataaaca aaaaattgct      4620
     gtcagataag tttccgctcc ccagaattga tgatattctt gatcaattgg gaagagcaaa      4680
     atatttttct tgccttgact taatgtcagg ttttcatcaa attgaactag aagaaaaatc      4740
     aagagatata acgtcttttt caacgagcaa tggctcatat cgttttacac gattaccttt      4800
     cggtctaaaa atagcaccta attcatttca gagaatgatg acaatagcat tctcggggct      4860
     tgagccaagt caagctttcc tctatatgga tgatttaatc gttattggtt gttctgaaca      4920
     acatatgatt aaaaatttag tagatgtttt taaactctgc agaaaaaata atctaaaact      4980
     gcatccagaa aaatgctcat tctttatgca tgaggtgaca ttcctaggtc acaaatgcac      5040
     agataaagga atcttgccgg acgacacaaa atttgacgtc atcaagaatt atccagtccc      5100
     acatgatgca gatagtgcta gacgtttcgt tgcattttgc aattactata gacgtttcat      5160
     aaaaaatttc gccgaatatt cccggcacat aacaagatta tgtaaaaaga atgttccatt      5220
     cgaatggaca gcagaatgcg aaaatgcatt ccaatactta aaagaaaagc tcgttcaacc      5280
     taatctattg cagtacccgg attttagcaa agaattttgc ataatcacag atgcaagcaa      5340
     acaagcatgt ggagcagttt taacacaaaa ctataatgga ctccagcttc cagtttcata      5400
     tgcatcaaga gcattcacta aaggtgaaag caacaagagt actacagaac aagagctagc      5460
     agcaatacac tgggcaataa catattttcg accatatata tatggaaaac atttcacagt      5520
     gcgaacagac catagaccat taacatattt gttctccatg gtcaacccga gttcaaaact      5580
     gacacgcatg cggctagaat tggaagagta cgactttaca gtagagtatt tgagaggaaa      5640
     agataacttt gtggcagacg ccctatcaag gataacaata tccgatctaa ttgacatgaa      5700
     caaaagaatc ctgaaagtca ctaccaggta ccaaagtaga caaaacaatt tctgcgcaga      5760
     aaataaacaa gaactattgc caaggcaaaa tcttgaaaaa gcttccaagc ccaacgtatt      5820
     tgacgttatt gtaaatgacg aagtacgaaa agtagtgacc ttgcgaataa ctgattcctc      5880
     gaccacattc aaacatggca agaaagttat agcaagaatt gacatttgcg atatctatac      5940
     caatggaatt ctcgacttag gtcagttttt tcaaaggctc gaaaaagaag ccggtatact      6000
     tagtatcacc aaagtcaaag tggcaccgag cgaaaagatc tttgaaacta tttcaataga      6060
     atctttcaaa aatatgggca atcaaatttt acaattttta agagtagcgc tactcacgcc      6120
     ggtgaccctc atccaaaacg atgaagaaaa agaagctata ttgtctacat tccatgaaga      6180
     tccaattcaa ggaggtcata caggcataaa taaaacaatt gcaaaaataa agagacgata      6240
     ttattggaaa aacatgacta aatatgttaa aaagtacatt aataaatgtc caaaatgcct      6300
     gacgtcgaaa acgacgaaac atacacgatc acctatgatt ataaccgaaa ctccacaata      6360
     tgcttttgac agagtgatag tggacacaat tggtccacta ccacgttcgg aaaatgggaa      6420
     tgaatacgca atcacattaa tatgtgacct gacaaagtat ttagtagcaa ttcctgtggc      6480
     aaacaaaagt gcaacaactg tggcaaaagc catagtcgaa tcttttattc tgaagtacgg      6540
     tccaatgaag acgttcatta cggacatggg aacagaatat aaaaattcca ttataaatga      6600
     cttgtgcaag tatttaaaaa tagacaatat aacgtctaca gcacaccacc accagacatt      6660
     aggtaccgtt gaaagaagtc ataggacctt caacgagtac attcgttcat atatttcagt      6720
     agataaaact gattgggaca tatggttaca gtatttcgtg tattgtttta acacaacacc      6780
     atcagtaaca cataattatt gtccatatga acttgtattt ggtagacaaa gtaacctacc      6840
     aattcaattt aatagcgtta atactataga tccaatatat aatatagaag actattctaa      6900
     ggaagttaag tttagattag aaaacgcgtg taagagagct cgaattcttt tagaaaaaaa      6960
     taaaattaag caaaaagaaa taaatgatag caaagtatta gattttaaaa tagaaatagg      7020
     agaccaagtt tatctcaaga atgaaacagg tcataaatta gaatcttctt atataggacc      7080
     gtttgaggtc attagtatag agaaaaataa taatgtagtt ataaagaata ggaaaaatag      7140
     ggaacaaaaa gttcataagg atagactaaa aaggaataac aaataaaaca caaaaaaaaa      7200
     aatatatata taaaaaaaaa agaaaaaaaa attttaataa gaatatatat atatagatat      7260
     cttttttaaa aaaaaaaata aataaatata taatatcaaa aagtgaaaac gaaaaaaaaa      7320
     tatatatata taaaattttt tctatggatt catctattat tgaaaatata ttcatatgat      7380
     ttcgaaaaga aagagagaaa gagaatttgt ctgagcagac acaaactaag acacaaaaaa      7440
     aaaaattttt ttcccttata tacacattta ccttaccctt attttacctt taattaacta      7500
     tctaatgatt attaataact ccataatatt acgttattct ctaaaaaggg gagg            7554
//
ID   Gypsy-5_DWil-LTR repbase;    DNA;    INV; 513 BP.
XX
AC   scaffold_181075;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_DWil_;
KW   Gypsy-5_DWil-I; Gypsy-5_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-513
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_181075; Positions  152583  153095.
XX
SQ   Sequence 513 BP; 186 A; 98 C; 74 G; 155 T; 0 other;
     tgtagtatat tcatacaaat aatcattcag tacaatgagc tcaacttata acaccctgtt        60
     gcaagtataa acaattaaac atatacgcat taaaatataa ttgtgcactt gaatatgttt       120
     atatatatat acattgatgt atgtacacaa acatattcac ataaatctac agctaagcat       180
     gatcatatat gtatttgcat ttgtatatgc acatacatat attcacataa gcaatgtatg       240
     cacaagcgta acatgagcta gagccaggcc agcgtggaac gctgaccaag cattttgatg       300
     catgcgctcc aacaatatgt atgtatgtac cgacactctc cctctctttt gtagctgtcg       360
     cataagtcgc agcataagaa tatatatgta aacttagctt aagcaaaata ataattttga       420
     ataaagaatc aatctgaaaa ctagaatcaa cggacactga cgtgtccgtc ctcaataata       480
     tcatttcttc ttaaatggaa cccggtcatt aca                                    513
//
ID   Gypsy-5_FoCa-I repbase;    DNA;    INV; 5434 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5434
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2574-2574 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1409
FT                 /product="Gypsy-5_FoCa-I_1p"
FT                 /translation="MPSDDEDNKAYGFTPLAQLKANLGGEKVPFDVGKTVR
FT                 IQTQPLSSSPTITTPDISSVATSLTRIEKTLKAVTDSHTSLARDVTALAVR
FT                 VNAIDTSQASTHTTTSTTPTATGTVSGSGSGTTSGRGPPTVSYLNDSSPKP
FT                 KYNPSLMSPEFFLQELEEYFALRNIPQSNWLLLMGRIFPQDSELASWWIAS
FT                 KPTIKTWAECRAAFIYYQTSDMNADLLNKQLYSRTQRFHEAFETYAWEIRA
FT                 LFHKVNPKVTDDVVVDRILNSCLPEIGTGLSANNYKTVVDLVKGARNVILT
FT                 INKMRSFERKPPLRIRQSDPIPDKKSSYSVTGRAPHYTAHSETSSKSDSAS
FT                 VTTSASGDSGSTSSSTAPANPGQRAPARSAATCGYCKKPGHTIAECRARLR
FT                 ADERRATATASTSSASPGNC"
FT   CDS           1355..4660
FT                 /product="Gypsy-5_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RAQSYCYCLYFICFSGKLLRQQRDGVLLLPAFLKPHT
FT                 TPQVQVFFGIRSTHALLDCGASHSFLTEQIAKQFELQIDPSALGEVTIGDN
FT                 KILKTLGSVTTTVKLADKYFSQIFHILPNSPYECVLGVDFICSANIILDLP
FT                 KGNFYFGEIPSQQISLINSEYMSTLHGLQPLQRAEISSLLNEFPAVMSEKI
FT                 GRTTLTQCELTVTDNPIAQRAYRVSPHKRTLITQHVKKMLELGIIRESNSP
FT                 WASPINLVKQGDEYRCTLDYRKLNKCIPNDPFYIPHMDSLLERLGPARFFT
FT                 KIDLRKGYWQIAMHPDSIKYTAFICHEGKYEFLRMPFGLSIAVAKFQRFVN
FT                 NLLKNARGVFADAYLDDIIIYSSTWKEHLKHVRFVLEQLQAAGLTANVAKC
FT                 SFGLTTISYLGFIISPDGVSTDPRKTSSILEFPIPHNPKEVKRFLGLCGWY
FT                 RHFIKHFSSKSEPLNALLRGTQLFIWGEAQQKAFDLLKQELIHTVTLALPD
FT                 FHKPFVLRTDASGVGLGAVLSNRDLDGTDRPIAFASRSLSHAERNYDGPEL
FT                 EGLAIIYAFKKFEHYLDGREFHLETDARALTYIHKHKDVNSKIMRWALRIQ
FT                 DFQFTVSHIAGTQNVVADALSRAPTDPPXVDELEDHMLVPTNSTFLALLQA
FT                 PVTPLLTLPAIRTAQDADPEVQALLTDLPESFSLSDGILYKNGKNTARLPF
FT                 IPQAMRRSVLHFFHDSPLAGHLGYRKTMARLLRRVFWFGMHEDIYAYIRSC
FT                 ATCQAVKNPTSKPHGSLQSVLPQGPWDMLAMDLMGPLPRSANRNTYLLVVV
FT                 DHFSKWVELFALKDATAPLIARTLEREIFCRFGAPASILSDNATNFRGKVL
FT                 ANLMKAWGIEQKFTTTYHPQGNITERVNRNLRAMLSAYTHSKHSKWDEFLP
FT                 ETALALRTAVHSSTGFSPALLNLGREPKLPLDYAVNPVHSDGFDSRIDYST
FT                 KLIDRLASLYSQAKLNIEKSCEEQKRHYDKRHKNITFKPNDLVLLKTHHLS
FT                 KKSEKFSKKLAIRWDGPFRIVAQLTPVTYTIVKMVPDAQPTIHNVKHLKPF
FT                 FDRPSHLSDYFACSSPENISMSDITVVESSDQGHSYHLRSRNLLV"
XX
SQ   Sequence 5434 BP; 1458 A; 1486 C; 1021 G; 1463 T; 6 other;
     tatatggcgc ccaactaatt ctccgcacgg aacctcactc cccaaacaca caagcacgga        60
     ctttagtaca atctttcctt tgcttaaatc tttcataagt taagttaacg actttttctc       120
     cggtacgttg agatcactcc caactctcac taccatacac aatcaccatg ccgtccgacg       180
     acgaggacaa caaagcatac ggctttaccc cccttgctca actcaaggct aatcttggag       240
     gagaaaaggt tccatttgac gtgggtaaaa cggtccgcat ccaaactcag cctcttagta       300
     gtagtcctac aattaccaca ccggatattt catcggttgc gacttctctc acgcgaattg       360
     agaaaactct caaagcagtt acggacagtc acacgtccct kgccagggat gtgactgcat       420
     tagcggttcg ggtgaacgca attgacacca gtcaagcctc cactcatact actacatcga       480
     ctacacctac agccactggt actgttagcg gtagcggaag cggtactaca agcggtagag       540
     gtcctcctac ggtttcatat ttaaacgatt ccagccctaa gccaaaatat aatccgtcct       600
     taatgtcgcc cgaatttttt ctccaagaac ttgaggagta ttttgccctg cgtaatattc       660
     ctcaatcaaa ctggttgctt ctcatggggc gaatwttccc ccaggattct gagcttgctt       720
     catggtggat tgcttcaaaa ccaacaatta aaacgtgggc tgaatgtcga gccgcgttta       780
     tttactatca aacctccgat atgaatgctg atcttctgaa taagcagctt tattcccgta       840
     ctcagcggtt ccatgaagct tttgagacat atgcctggga aattcgtgcc cttttccata       900
     aagttaaccc taaagtaact gacgatgtag ttgtcgatcg catcctaaat tcctgccttc       960
     ccgaaattgg taccggtctt tccgcgaaca actacaaaac ggtggtcgac ttagtgaaag      1020
     gagcacgtaa cgtaatcctc actataaata agatgcgcag tttcgagcgt aagccacctc      1080
     tccgcatccg tcaaagcgac ccaattcctg acaagaagtc ctcatatagt gtaacgggcc      1140
     gagcgccgca ttacactgca cattcmgaga cgtcctcaaa atctgactcc gcatcagtca      1200
     ctacaagtgc aagtggtgac tcaggttcaa cttcttcttc cactgctcct gcaaacccgg      1260
     gtcagcgggc tcctgcacgc tcggctgcta cgtgcggcta ttgcaagaaa ccgggacaca      1320
     ctattgctga gtgtcgtgct cggttgcgtg ctgacgagcg cagagctact gctactgcct      1380
     ctacttcatc tgcttctccg ggaaactgct aaggcagcag agagacgggg ttctcttgct      1440
     gcctgccttc cttaaaccac atactacccc gcaagttcaa gtattctttg gcatacgctc      1500
     cactcacgca cttcttgact gcggggcctc tcattctttt ctcactgaac aaatagccaa      1560
     acaattcgaa ttacaaatcg atccttctgc tcttggcgaa gtcactatcg gtgacaataa      1620
     aattctgaaa actcttggtt ctgtaacgac tacagtaaaa ttagctgaca aatatttttc      1680
     tcaaattttc catattttgc ccaattcgcc ttatgaatgt gttcttggtg tagattttat      1740
     ttgctcagct aatataatat tagatttacc taaagggaat ttttattttg gcgaaattcc      1800
     ctctcaacaa atttctttaa taaattcaga gtacatgtct actctccatg gcctccagcc      1860
     acttcagcga gcggaaattt cgtcgctcct taatgagttc cctgcagtca tgagtgaaaa      1920
     aatcggccgc acaactctca ctcaatgtga actaaccgtc accgacaatc ctatcgccca      1980
     gcgtgcatat cgtgtctcac cgcacaaacg tacgctcatt acccaacacg ttaagaaaat      2040
     gttggagctc ggcatcatac gcgagtctaa ctctccatgg gcttctccca tcaacttagt      2100
     caagcagggt gacgaatacc gctgtacact tgactaccga aaacttaata agtgcattcc      2160
     caacgaccca ttttatattc ctcacatgga ttctcttctc gagcgccttg gtcccgctcg      2220
     cttcttcact aaaatcgatc tamgaaaagg atattggcaa atcgcaatgc atcctgactc      2280
     cataaaatat actgccttca tttgccatga aggaaaatac gaatttctcc gtatgccctt      2340
     tggcctgtcc atagcagtcg ccaagtttca gagatttgtc aataatctcc tcaaaaatgc      2400
     tcgcggtgtt tttgccgatg catatctaga tgacataatt atttactctt ccacatggaa      2460
     agaacattta aaacacgtga ggttcgtgct cgagcagttg caagcagcag gactcaccgc      2520
     taacgtagcc aaatgttcct ttgggttgac cacaatttcc tatcttggct tcataatttc      2580
     tcccgacggt gtcagtaccg atccccgaaa gacttcttca atcttagaat ttcctattcc      2640
     gcacaaccct aaagaagtga aaagatttct tggtttatgt ggctggtatc gccacttcat      2700
     taaacacttc tcttccaaat ctgaaccact caatgcactt ttacgtggca cacaactctt      2760
     catttggggc gaagcgcaac aaaaagcgtt cgacctactc aaacaagaac tcatacacac      2820
     cgtcacctta gccctgcctg actttcataa gccgttcgta ctacggactg atgcgtccgg      2880
     ggttggactc ggtgcggtgc tctctaaccg tgatttagac ggaacggatc gtcccattgc      2940
     cttcgcttct cgctcactca gtcatgccga gcgcaattat gacggtcctg aactcgaagg      3000
     tttagcgatc atttacgcct tcaaaaagtt tgaacattat ctcgacggac gagaatttca      3060
     tcttgaaacg gatgcccgtg ccctcacata cattcacaag cataaggatg tcaacagcaa      3120
     aataatgcgc tgggcactcc gcatacaaga ctttcaattc acagtctctc atattgctgg      3180
     tactcagaac gtagttgctg atgcactttc ccgagcgccg accgatccac cacawgtaga      3240
     cgaactagag gatcatatgc tagtcccaac caactctact ttccttgcac tgctgcaagc      3300
     gcccgtcaca ccgctcctca ctctaccagc cattcgcact gcacaggatg cagacccgga      3360
     ggtgcaagct ctgctcacag acttgcccga gtcattctct ctctctgacg gtattctata      3420
     caagaacggg aaaaacaccg ctcgcctccc tttcatacca caggctatga gacggtcggt      3480
     cctacacttc ttccatgact cccctctcgc tggccattta ggttaccgta aaaccatggc      3540
     ccggcttctt cgtcgcgtat tctggttcgg tatgcatgaa gacatttatg cgtacattcg      3600
     atcgtgtgct acttgtcaag cggttaaaaa cccaacatca aaacctcatg gttcattgca      3660
     gtcagtatta ccacagggcc cgtgggacat gctggcaatg gatttaatgg gacctctacc      3720
     ccgctccgct aaccgcaaca cgtatctcct cgtagtagtc gaccacttct ccaaatgggt      3780
     cgagcttttt gctctaaagg acgctaccgc tccattaatc gctcgcacct tggaacgaga      3840
     gatattctgc cgttttgggg ctcctgcctc aatcctgtcc gacaacgcga ccaatttccg      3900
     tggtaaggtt ctggccaatc tcatgaaagc atgggggatt gagcagaaat ttaccacgac      3960
     gtatcacccg caaggcaaca tcactgaacg ggtgaaccgg aatctacgtg ccatgctctc      4020
     cgcttacacg cactctaaac actccaagtg ggatgagttt ctcccagaaa ctgctctcgc      4080
     tctaagaact gcagtgcaca gttcgaccgg cttcagcccc gctctcctta acttaggccg      4140
     tgagccaaaa ctccctttag attacgcagt gaacccagtt cactctgacg gcttcgactc      4200
     tcgcatcgat tactctacca aacttattga tcgattggca tccctttact cccaagccaa      4260
     attaaatatt gaaaaatcat gcgaagagca aaaacgacac tacgacaaga gacataaaaa      4320
     tatcaccttt aaacctaatg atctggtttt actaaaaact catcaccttt cgaaaaagag      4380
     tgaaaaattc tctaaaaagc ttgcaattcg gtgggatggc ccatttagaa ttgtagctca      4440
     attgactcct gtcacatata caatcgtaaa gatggtgcca gatgctcagc ccactataca      4500
     taatgtaaag catctcaagc catttttcga tcgtccttca catttatctg actattttgc      4560
     atgttcttcc cctgaaaaca tttccatgtc agacattact gtggtagaat cttctgatca      4620
     aggacattct taccaccttc gttctagaaa tctattagtt tagttcacag ttgacaagtg      4680
     agttgtcaac atctcttttc tggctctctg gtcagccaca taatttctta caaaataagt      4740
     tctcaaataa tacataaata ttacaattca caaatagtta gttcaactat cctttaaatt      4800
     catcactttc ttcaaatttt ggatctttct ggtatacatt acggtaataa ttcataaata      4860
     ttgttagttt taagttttcc attaattata agtacacaag ttatccaaac aatttattac      4920
     ttaattttaa gtcataaatt taagttctaa aatatcctca cgacagaatt acggtcatgt      4980
     ctcctcccgt ttacgaacaa caacctggtg aacatatcca gatgtttgcg tggagagttg      5040
     agtccgcgat gcgactcgct tcccccaacg gcgacgtacc cgacgtacgc attttccatc      5100
     gtatccttct cggcctacat ccctcaatca cggcagtaat gaccaccaac cccacaaatc      5160
     tggagcagct cttctgctat ggcgaaattc tcgacacact gctctctccg gacgacccat      5220
     tctaccgcac catacgcgaa cactsgcctg ttactgtgac agtagacaac gagcagttcc      5280
     ggcctcaaag ccccacggcg gtacagtgct atcggtgtca cgacatggga cattacgctg      5340
     ccggttgcac caggaagcgc atcaacaagc ccaaacgcaa acgtggatgt aagcgcctca      5400
     agtccacccc agcctcgcca cagggacggg ggca                                  5434
//
ID   Gypsy-5_FoCa-LTR repbase;    DNA;    INV; 754 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-754
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2580-2580 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 754 BP; 188 A; 216 C; 140 G; 208 T; 2 other;
     tgtagggctg aaagcctaca caacgcgaat tccatcgcgt cgaattaatt aattaaatta        60
     accagtctag acgaggtcat agactggctt ggccgtgaag gccaactaag ttaatgcggg       120
     tgagataccc gcagcccact atttaaggag cgtccgagct cccatttggg actactatkt       180
     ttttgactcg cgacgagtca actcccatgc acatgtatgt atgattttct ctctctacta       240
     acaagccagt gattggcagc taccactgag gatagaggta gcggctctga gcccctttct       300
     gcaaactaac acttcttacc taaataaatt tctacttgat tatgtattta ctgtccagag       360
     ccaccaccac tttcctgatt cgactccagt ccaccgcata actcttatat agcacgagta       420
     ggactcggta taactagagt aggtatgcac taacagctca gttgagctcc ctctcgctcc       480
     tagtctcatc ctgcctcaac accactggtc cattcttaaa tactaggcca tgcttaaaag       540
     cattgccatg cttattaacc wgtgagccca agttccattt atctcttggt tactcactct       600
     cacagacaga cacggcgttc taaccgctcg gtctgtctct atatgtaagt agcactctct       660
     tccaactcgc tccactacac agcgtaacgc actcggtcgc gctctcctgc aaccagcaag       720
     ggttgcctct ctcttctcag tgctctccct taca                                   754
//
ID   Gypsy-5_HeAr-I repbase;    DNA;    INV; 3976 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-3976
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5555-5555 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..847
FT                 /product="Gypsy-5_HeAr-I_1p"
FT                 /translation="MMEHKQEVSEPTDLAVISVQSRLLPFWREYPRMWFIQ
FT                 FEAVVEPQKTSDENKYRYVLGQLQPTDLQHVTDIVIKPPETKKYEAIKQRL
FT                 LSVYEQSEVKNFKNLISGLELGNQKPSQLLRRMRELGGNMITEDGIKIEWM
FT                 NHLPAQMRVVLSVNTDSSLDMLAAMADKMMEYSESANIAAVSSSQPDSAAV
FT                 NQQIMSAQIQVLSKQLENLTLEISELRSRGRPNHRRHQRSRSRSKSTARHQ
FT                 HDPNRVCYYHYRFGDQARRCVSPCARRNQKKSEN"
FT   CDS           823..3975
FT                 /product="Gypsy-5_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="AKSKEVGKLEEAPTVADVGVTTASNRLCVFDRNTNHR
FT                 FLVDTGADISVLAATPIHKKKCSPTSYKLYAANSSPINTYGEKELQIDLGL
FT                 RRRFRWSFVVADVKTSILGADFLRHFKLLVDLHQKKLIDKVTQLSINAVEI
FT                 SSMQQAVYVLSNKQTYQDILKQYPDLLRPMSLKTPAKHNVVHHIETTGQPV
FT                 FARARPLPPDKYKAAKDEFERMMEMGICQPSKSPWASPLHVVKKKDGSLRV
FT                 CGDYRRLNSVTLPDKYPIPRIQDFTYQLHNKKIFSKLDMKMAYYKIPLNKE
FT                 DAQKTAIITPFGLFEFTCMPFGLRNASQTFQRFMHEVLRGIEGCFSYIDDI
FT                 LLYSDNEQEHKELLHRVLDRLNQYGVSLNVNKCEFAQTKINFLGYEVTADG
FT                 IKPTEERIKVISSYPQPKTIIELRRFLGMLNFYRDCLPNQADMQSELNKYL
FT                 HNGKKNDKTPITWTPAAEQAFQKCRQSILECATLSHPIAGTPLCIMTDASD
FT                 HGIGAVLQQRDNAAWKPLAFFSKALSATQSRYSTYDRELLAIYAAVKHFRR
FT                 LIEGCDVTVYTDHKPLSYALSRPQSSSDTQRRERQLHFISQFVKNIVYVKG
FT                 EENSVADALSRIDEIQCPSNIDYDKLSRDQEQDDELKQLKLQPNLKFISVT
FT                 LPGTQRPITCEMSTSTLRPYLPPAHRFAAFKAQHDLCHSGIKATRKQVTSK
FT                 FFWSSMNKDVTTWTRNCVGCQRAKVHRHVVTPLGSFPPSQRFEHIHIDIVG
FT                 PLRLSYDYRYCVTIMDRFTKWPEAVPVREITAEIVAKALYENWIARFGCPL
FT                 RISTDQGRQFESSLFSALMKKLGITRIRTTAYHPQSNGQIERWHRTLKAAL
FT                 MARGATTNWSDELPTVLLGLRTALREDNNLSPALMTYGSTLRVPSDFFAPT
FT                 TTTNMSDEDYVRCLTQTMTSLSPSCTTARTTASPFIHKDLGTCTHVFVRND
FT                 TVRAPLTPPYDGPYPVLQRHEKFFKIQLPNRETVVSLDRLKPAYICNEDET
FT                 PNTTCPTNTASCTPSIVDPVPSQQPYITRTGRVCKPNVRFAKGGV"
XX
SQ   Sequence 3976 BP; 1189 A; 1108 C; 858 G; 821 T; 0 other;
     ttttggtgac cccgagagaa aaatgatgga acacaagcaa gaagttagtg agcctacaga        60
     cctcgctgtc atctccgtgc agtcgcgtct ccttcccttc tggcgtgaat atcctcgcat       120
     gtggttcatc cagtttgaag ccgtcgtcga gccgcagaag accagtgacg aaaacaaata       180
     tcgttacgtc ctgggccaac tacaaccgac cgaccttcaa catgtcacag acatcgtgat       240
     caagccgcca gaaactaaga agtacgaggc catcaaacaa cgccttctct ccgtgtacga       300
     gcagtccgag gtgaaaaact tcaagaacct catcagcgga ttggagcttg gcaaccaaaa       360
     accgtctcag ttgctacgac gtatgcgcga actcggcggc aacatgatca ccgaagatgg       420
     catcaagatt gagtggatga accaccttcc ggcgcaaatg cgagttgtgc tgtctgtgaa       480
     cacagattca tcactcgata tgctcgcggc aatggcagac aagatgatgg aatattccga       540
     gtcggcaaat atcgcagctg tctcttcatc tcaaccagat tctgcggcag taaaccagca       600
     aatcatgtcc gcgcagatac aagtgctctc aaaacaactt gagaatctga cactcgagat       660
     ctccgaactt cgtagccgtg gaagaccaaa ccatcgtcgt catcagcgct cccgctcaag       720
     gtcaaagtcc actgcaaggc atcaacacga tcccaatcga gtatgctact accactaccg       780
     atttggtgat caggcgagac gctgcgtgtc accgtgcgct aggcgaaatc aaaagaagtc       840
     ggaaaactag aagaggcacc gaccgtggcg gacgtcggtg taactacggc aagtaaccgc       900
     ctatgtgtct tcgatcgcaa cacgaatcac cgtttcctcg ttgacaccgg tgcggatatc       960
     tccgtcctag ccgccacccc gatacataag aagaaatgtt cgccaacttc atacaaacta      1020
     tacgccgcga acagttctcc aatcaatacc tacggcgaga aagaactaca aatcgaccta      1080
     ggcctcagaa gacgatttcg ctggtcattt gtagtcgcag acgtcaaaac atcaatactc      1140
     ggagctgact tccttcgcca cttcaaactc ctcgtcgact tgcatcaaaa gaagctaatc      1200
     gacaaggtga cacaactctc gataaacgcc gtagaaatct cgtcgatgca acaagccgtt      1260
     tacgtactta gcaacaagca gacatatcaa gacatactca agcagtatcc agatctactg      1320
     cgacctatgt ccttgaaaac gcccgctaaa cacaacgtcg tgcatcacat cgagactacg      1380
     ggacaacctg tcttcgcccg tgctcgcccc ctgccgcccg acaaatacaa agcggctaag      1440
     gacgaattcg aacgcatgat ggaaatgggc atatgtcaac cttccaagag cccgtgggcc      1500
     agcccactcc atgtggttaa gaagaaagat ggcagtctac gagtgtgcgg cgactacagg      1560
     cgtctaaatt cagtcacgct accagataaa tacccgattc cgcgcataca agacttcacc      1620
     tatcaactac acaataagaa gatcttttca aaactcgaca tgaaaatggc ctactacaaa      1680
     ataccactga acaaagaaga cgcacagaaa acggcaatca tcacaccctt cgggttgttt      1740
     gaattcacct gcatgccgtt tggcctacgt aacgcaagtc aaaccttcca acgattcatg      1800
     cacgaggttc tgcgcggcat cgagggctgt ttctcataca tcgacgatat cttgttgtac      1860
     tcagataacg aacaagaaca caaggaatta ctgcatcgag ttcttgaccg cctgaaccaa      1920
     tacggcgtat cactcaacgt aaacaaatgt gaatttgcac agacgaaaat caactttctc      1980
     ggctatgaag taacagcgga cggcataaaa ccaactgaag aacggataaa agtcatatcc      2040
     agttatcctc aaccgaaaac tatcatcgag cttcgtcgtt tcctgggcat gctaaacttc      2100
     tatcgagatt gtttaccaaa tcaagccgac atgcaaagtg aactcaacaa atatctgcac      2160
     aatgggaaaa agaatgacaa aacgcctatc acgtggacgc cggccgccga acaagcattt      2220
     caaaaatgcc gccaaagcat actggaatgt gcaacactat cgcaccctat cgccggcacc      2280
     ccactctgca tcatgacgga cgcttctgac cacggcattg gagcggtgct acaacaacgt      2340
     gacaacgcag cctggaaacc gctagcattc ttttccaaag cattgagtgc tacgcaatca      2400
     cgatacagca cgtatgatcg cgaactacta gcgatctacg cggctgtgaa acatttccga      2460
     agactcatcg agggctgtga cgtcaccgtc tacactgatc acaaaccgct gtcctatgcg      2520
     ctctcaaggc cgcaaagtag cagcgacact cagcgacgtg agcgacaact ccactttatc      2580
     agtcaattcg tcaagaacat cgtgtacgta aagggagaag aaaactcagt cgctgacgcc      2640
     ttgtctcgta ttgacgaaat acaatgcccg tcaaacatcg actacgacaa gttatcacgt      2700
     gatcaagaac aagacgacga actgaaacaa ctgaagctgc agccgaactt aaaattcatc      2760
     tcagttactt tgcctggcac gcaacgacca atcacgtgcg agatgtcaac gtccacgctt      2820
     cgcccatact taccaccggc acatcgtttt gctgcattca aagcgcaaca tgatctctgc      2880
     cactctggta tcaaggcgac taggaagcaa gtgacatcga agttcttctg gtcatccatg      2940
     aacaaagacg taacaacgtg gacaagaaac tgcgtcggct gtcagcgagc aaaagtacat      3000
     cgtcacgtcg tcacgccgct aggaagtttc ccgccatcgc aacgcttcga acacatacat      3060
     atcgatatag tcggcccact tcgactatct tacgattatc gatattgtgt tactatcatg      3120
     gacagattca caaagtggcc agaagccgta ccagtgcgcg aaataacagc tgagatcgtc      3180
     gcaaaagcgc tatatgaaaa ctggattgct agattcggct gcccactacg tatatcaacc      3240
     gatcaaggca ggcagtttga atcgtcgttg ttcagcgcgc taatgaagaa actcggcatt      3300
     acacgcatac gtacaactgc ataccatccg cagtcaaatg gacaaataga gcgctggcat      3360
     cgtacgctaa aagctgcgtt aatggctaga ggcgcaacta ccaactggag tgacgaactt      3420
     cccaccgtac tacttggcct ccgaacagcg ctgcgtgaag ataacaacct aagtcccgcg      3480
     ctaatgacct acggttctac gctacgtgtg ccatcggatt tcttcgcgcc gactactaca      3540
     actaacatgt cggacgaaga ttacgtacgc tgcctcacac aaacgatgac gtcactctca      3600
     ccttcgtgca ctaccgcgag aacaacagcc agtcccttca ttcataagga cctcggtacg      3660
     tgcacacacg tctttgtgag gaacgatacc gtgcgagcgc cgctgactcc accctacgat      3720
     ggaccgtatc cagtgctaca gcgacacgaa aaattcttca agatacagct accgaatcga      3780
     gagacagttg tatcgctgga tagactgaaa ccggcataca tctgcaacga agacgaaacg      3840
     ccaaacacta cgtgtcctac gaatacagca agttgtacac cgagcatcgt ggatcctgta      3900
     ccttcacagc aaccctacat caccaggacc ggcagagtat gcaagccaaa cgtacgcttc      3960
     gctaaggggg gggtac                                                      3976
//
ID   Gypsy-5_HeAr-LTR repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-317
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5543-5543 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 317 BP; 66 A; 87 C; 58 G; 106 T; 0 other;
     tgtgaggtac gcttcgctgc accacccaca acatgggatt gaagaccgct cgcgccgaac        60
     gcgttatatt tacgcatgtg ctatctcgct cgcgcgcgca tctgtctcgt ttcttttagg       120
     tactcacaag agtcttatca gagcgttctt attggacgat cgcgcgacgc tctcgcctga       180
     gcgttaacac tacttcggcc cctgttattt tacacttaag ctcgttctgt atttacattt       240
     attgaatata ctttatactc ttctacttta caccatcatc gctgttttat ttcaacatta       300
     cctgcattgc tgctaca                                                      317
//
ID   Gypsy-5_HMM-I repbase;    DNA;    INV; 4247 BP.
XX
AC   CAEZ01007584;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_HMM_;
KW   Gypsy-5_HMM-LTR; Gypsy-5_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4247
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007584; Positions  180246  176000.
XX
CC   Positions [3117-3641] - Integrase core
CC   'ATGAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..1716
FT                 /product="Gypsy-5_HMM-I_1p"
FT                 /translation="MEHARPPTELILEGGPANRADAWRKWYTQFQVFLKAS
FT                 GVYRETKEVQASLLINLIGPDGYDIFSTFKFTKDESQDDFDVLVRKFNEYF
FT                 VSKHNTTMARFRFFTRVQEPGETIDVYVTALRLLSHHCEFEHLEDGLIRDR
FT                 IVCGISDITVRDRLLRTEELTLEKTIKICQANEISIAENKQIEICNGAESS
FT                 AALRTVDALFGARARAPRRGGGGGAAASAASAAPSAGRGHVRERPALDSEN
FT                 PDRRGTVFNSGKCVPAKCCVACGNSYYIDNYHRCPARFVQCFLCKNKGHYK
FT                 KMCPVKGKKQVHELRGSVSDHDSFVVSTVRDYCNKNSKWFETLYLYSTGVP
FT                 VNFKLDSGSDLNVLSFLTYKRLGYCLNDLTKCNIKAQSFCGNYLPILGSIE
FT                 MSWIYKNNIYKINFVICNDNCQSVLGQDTCEKLGVIKRIYSLNIETYDDLF
FT                 QGVGKLPGKYKIMIEKNVCPSVCPVRKIPFGIRDKLKYELNNMEEIGIIRK
FT                 VSHPTPWVNAIVLPAKRMAAFVSVSIRGLSTVRYAVLTIRYLLLPILRVRC
FT                 AAPNILVN"
FT   CDS           2601..4148
FT                 /product="Gypsy-5_HMM-I_2p"
FT                 /translation="MMLRIQSYTFNVIYKPGKYMYVADTLSRAPLTDIMDT
FT                 KYSIELEAQECFLIANVRFSDEKIKCVKNATSTDLECKILIKYILYGWPRY
FT                 RADVDKAVSVHWPYRTSFEYIDGVIFKDNLVFIPRELRTTMLQCVHEGHLG
FT                 IDRCKRRARDVMFWSGMSRDVERAVRACAVCADLAASPSKEPMIPHDVPSL
FT                 PWRKVGSDIFVCYRKYYLILVDYFSNFIEVSPLNNIGSSAVINAMKDQFAR
FT                 HGIPAELVTDNGPAYISKEFNQFSGDWCFKHTTTSPYYAQANGLSERAVRT
FT                 VKNIIKKSVISGTDLHLGLLNIRVTPRNGVSSPAQLLMGRRLNTKLPIHVN
FT                 KLKPDRNNSDDYLNIVKNRSYTKKYYDRSARKLPQLNSGEEVVVVDGKSRK
FT                 RMIVRDPAPQPRSYFLTDNTGRLHRRNRRHLIKAQPSTSLQDTSSAILGEK
FT                 AVYDDNTENEVDIEPFLVNASPSEPHTDVTETTRTRRLAACKAREKMALLF
FT                 KNKKNNSFLVILVYFNESSV"
XX
SQ   Sequence 4247 BP; 1315 A; 664 C; 963 G; 1305 T; 0 other;
     tggtgacagc ggtgttaaat ttaaacagat aaatgattat tattattaaa catggaacac        60
     gctagacctc caacggaatt aatattggaa ggtggccctg caaatcgggc ggacgcgtgg       120
     cgtaaatggt atactcaatt ccaagtgttt ttaaaggcat cgggagtgta cagagaaaca       180
     aaggaagtac aagcgagttt acttattaat ttgatcggac ctgatggata tgacatattt       240
     tcaaccttca agttcacaaa ggatgagagc caggacgatt ttgatgtgct cgttagaaaa       300
     tttaatgaat attttgtatc gaaacataat acaacaatgg cgaggttccg gttttttaca       360
     cgtgttcaag aaccgggcga aactattgac gtttacgtga ctgcgttgcg tctgctgagt       420
     catcactgtg agtttgagca tttagaggat ggtttaatac gtgatcgtat cgtttgtggc       480
     atatccgaca ttacagttcg tgacagatta ctaaggacag aggaattgac cttagaaaaa       540
     actataaaaa tttgtcaggc aaacgaaata tcaattgcag agaataagca aatcgaaata       600
     tgtaatggcg cggaatcatc ggcggcgctt cgaacagtgg acgcattgtt cggtgcgcgt       660
     gcgcgtgcgc cgaggcgcgg tggtggcggc ggcgcggcag catcggcagc atcggcggca       720
     ccgagtgcgg gccgcgggca cgtgcgcgag cgccccgcac tggacagcga gaatccagat       780
     cgtcggggca ctgttttcaa cagtggcaag tgcgtcccgg ctaagtgttg cgtcgcgtgc       840
     ggcaattctt attatataga taactatcat cgatgtccgg ccaggtttgt gcagtgtttt       900
     ttgtgcaaaa ataaagggca ttataaaaag atgtgtccgg tgaaaggtaa aaaacaagta       960
     catgagcttc gtggaagtgt tagtgaccat gactcgtttg ttgtgtcaac tgtaagagat      1020
     tattgtaata aaaatagcaa atggtttgaa acattatatt tatatagtac tggtgtgcct      1080
     gtaaatttta aattggattc ggggtccgat ctaaatgtgt tatcattttt aacttataaa      1140
     agattaggtt attgtttaaa tgatttaaca aaatgtaaca taaaagcaca atctttttgt      1200
     gggaattact tacctatact tggttctatt gagatgtctt ggatatataa gaataatatt      1260
     tataaaatta attttgtaat atgtaatgat aactgtcaga gtgttttagg tcaagatact      1320
     tgtgaaaagt tgggagttat taagcgtata tattctttaa atatagaaac atatgatgat      1380
     ttatttcagg gtgtaggtaa attaccgggt aaatataaaa ttatgattga aaaaaacgta      1440
     tgtccgtcag tatgtccagt gcgaaaaatt ccattcggta taagagataa attaaaatat      1500
     gaattaaata atatggaaga aataggcatt ataagaaaag tatcacatcc gactccctgg      1560
     gtaaacgcta ttgtattgcc agctaaaagg atggcagcgt tcgtatctgt ctcgatccgc      1620
     ggcctctcaa ccgtgcgata cgccgtgctc actatccgct acctactgtt accgatattg      1680
     cgtgtgcgct gcgcggcgcc aaatatttta gtaaattaga tgcgcgctcc gggttttgga      1740
     tgattcagtt agatgacgaa agcgctgatt tatgtacttt tggtactccc tttggtcgtt      1800
     atcaattttt aaggctgccg tatggtatta gttgtgctag tgaagtattt catgcaaaaa      1860
     tttgtcaatt gctcgagggc ttagagggag ttcattcgtt tgttgatgac attatagttc      1920
     acggacgtac tatggaagag catgatatga gactaagact actcttgaat agggcgcggc      1980
     aagtaggtat taaatttaat cgcgataaat gtgaattcgg agtcgaggaa gttatttatt      2040
     tgggtcatat gtttaatgct gatggtatgc atatagataa aaataagtta agggctataa      2100
     aagaatgcct agtccgacca acagagaatc attggagaga tttcttggaa tgactaatta      2160
     tttgtctaag tttatcgctg ggtatgctaa tatagtaact cctttaagaa atttattaaa      2220
     aaaaggtgtt gcgtggtgtt ggaatagcac atacgagtct atcgtattag aattaaaaga      2280
     cgcgatatgt caagcgcctg tgcttggttt gtatgcacct actgagccca taactttaac      2340
     agtagatgca agttcaagag ccttaggtgc tgcgttattg caaaatggaa ggccagttaa      2400
     atatgcttca cttacattaa cagaaactca gtcaagatat gcacaaattg aaaaagaaat      2460
     gctagctatt gtttttgtca cttgaaagat ttcatcagta tgtatatgga cgtggtaata      2520
     taacagttga aagtgatcat aagcctcttg aagctttgtt taaaaaaccg ttgcatttag      2580
     taccggcgcg gttacagcgt atgatgttgc gtatccaaag ttatactttt aatgttattt      2640
     ataaacctgg aaagtatatg tatgttgctg acactctgtc cagagcaccc cttaccgata      2700
     taatggatac taagtattca attgaactcg aagctcaaga gtgtttcctt attgccaatg      2760
     tacggtttag tgacgaaaaa attaaatgtg ttaaaaacgc aactagcacg gatttagaat      2820
     gtaaaatctt aattaaatac attttatacg ggtggccgcg ttacagagct gacgtggata      2880
     aggcagttag tgtccattgg ccgtatagga catcttttga atatattgat ggtgtaatat      2940
     ttaaagataa tttagttttt attcctcgcg aattacggac gacaatgtta caatgtgtgc      3000
     acgaaggtca tttaggcatt gatagatgta aaagacgtgc gcgggatgta atgttttgga      3060
     gtggcatgtc gcgagatgtt gagcgtgcag ttcgggcgtg tgctgtatgt gctgatcttg      3120
     ctgcatcacc ctctaaggag ccaatgatac cgcatgatgt accaagtttg ccatggagga      3180
     aagtcggctc agatattttt gtttgctatc gaaaatatta tttaatatta gttgattatt      3240
     tttctaattt tattgaagta agtccgttaa ataacatcgg gtcgagtgct gtaataaacg      3300
     cgatgaaaga tcaatttgct cgacatggaa tacctgctga attagtaaca gataatggtc      3360
     ctgcgtatat atctaaagaa tttaatcaat tttcagggga ttggtgtttt aaacacacaa      3420
     caacttcacc ttattatgct caggctaatg ggttgagtga acgagctgtg cgaactgtta      3480
     aaaatattat taagaaatcg gttatttcgg ggacagattt gcatttaggt cttcttaata      3540
     tacgagtgac tcctcgtaat ggagtgagct cgccggcgca attgttgatg ggtagacgtt      3600
     tgaacacaaa gcttcccata cacgttaata aattaaaacc tgatcgtaac aatagcgatg      3660
     attatctaaa tatagtgaaa aatcgttctt atactaaaaa atactatgat aggtcggcgc      3720
     gaaagttacc gcaattaaat tccggagaag aagtagtagt tgttgatggt aaatcaagaa      3780
     aacgtatgat tgttcgcgat cctgctccgc agccacggtc ctattttctt acggacaaca      3840
     cgggaaggtt acatagacga aatcgtcgtc atcttattaa ggcacaaccc agcacgtctt      3900
     tgcaagatac atcttctgca atcttaggag aaaaggcggt atatgatgat aatacagaga      3960
     atgaagtgga tattgaacca tttttagtta atgcgtcgcc cagtgagccc cacacggatg      4020
     ttacagaaac tactcgtact cgtaggttag ccgcatgtaa agcacgcgaa aaaatggcat      4080
     tattatttaa aaataaaaaa aataatagtt ttttagtcat attagtatat tttaatgaaa      4140
     gttctgtcta agtctataaa tattgtaaaa ttttatataa agatttatat atctagatag      4200
     atattggtga tggtataatt tttttatttt tttgtgtaag gggaaga                    4247
//
ID   Gypsy-5_HMM-LTR repbase;    DNA;    INV; 119 BP.
XX
AC   CAEZ01007584;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_HMM_;
KW   Gypsy-5_HMM-I; Gypsy-5_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-119
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007584; Positions  175999  175881.
XX
SQ   Sequence 119 BP; 47 A; 9 C; 21 G; 42 T; 0 other;
     tgttatatat taagtaatat taaattatta ataaatgtga ggtagaatgc aaaacaattg        60
     taaaactagt tatgagaaat aaaagtcagt cttggtcgtg agctagttgt tttactaca        119
//
ID   Gypsy-5_LH-I repbase;    DNA;    INV; 4276 BP.
XX
AC   ADOQ01017645;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_LH_;
KW   Gypsy-5_LH-LTR; Gypsy-5_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4276
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017645; Positions   10358    6083.
XX
CC   Positions [1782-2300] - Reverse transcriptase
CC   Positions [3351-3845] - Integrase core
CC   'ATAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(177..2123,2127..4247)
FT                 /product="Gypsy-5_LH-I_1p"
FT                 /translation="MANNDEGRNHDENDEDVLQADAMTVIRLKEELKRRKL
FT                 KVSGNKVDLVARLKAALVLEGQHEEDDDNDGSSDEDEGSDADADGAAKNRR
FT                 RSKFVPTFKDVEESIDTFSGDDGTNVKTWIKEFEDLVKLCEWNETQKIIYA
FT                 KRLLRGSARLFIKSGDCPKTWKVMKTALKSEFTQRVDSRAVHKQLQRRKKK
FT                 ASESYHEYCYKMVEIATRADVETKAVIQYIIDGIDDEEYRKSVLYGAKTIR
FT                 ELKDKFDTYVEMCGRIKTKSNENKKKSPVESKVVKQNGKRCYNCGDSNHLS
FT                 AVCPSKGQGLKCFGCNKYGHIAAKCPESADAEKKKSCNVIQSDSGKCRKDV
FT                 IINNTKLSAIIDSGSDISLMCEENYKQVGSPVLGNRTIRFRGAGSGENTTL
FT                 GDMRLKICIDMEIYDIIVHLVRDEIIPHGVLIGSDFLNGVEVNIKRGIVNI
FT                 SKIADDSSEFAEVCKIDAVQNDEHMDLSHIANDDIKTEVAGLIKEYKPKKE
FT                 EEVDVKMTIVVKDDVPVTQNARRLSVAEKAEVDLQIHEWLEEGIVRPSCSD
FT                 YASPIVLVRKKNDSIRICVDYRRLNEKIIKNRYPLPLIEDQLDFLQDAKVY
FT                 STLDLKNGFFHVPVEETSVKYTAFVVSNGQYEFLRMPFGLSTSPAYFQKYF
FT                 KYVNAVFRDLTAEKIVTIYMDDLIVPSVDVKEGLSRLKLVLKTAARYGLSF
FT                 NWKKCQLLKSKVHYLGYVIENGKITPSEEKTDAVKHFPKPTSVRAVQSFLG
FT                 LTGYFRKFVPQYSLIARPLTDLLKDERKFDFDKEQKHAFDQLKLALSNRPI
FT                 LRLYCPAAETKLHTDASALGFGAILLQRDSEDRLFHPIYYASGKTTPTETK
FT                 YDSYRLEVLAIIKALKKFRVYLIGISFTIVTDCKAFMQTMKKKDICTQVAR
FT                 WALYLEEFRYSIVHRPGKTMRHVDALSRHPLPSAMLIEECQDDILTRLRQN
FT                 QQEDEEVKEIEKKMKKGRTDGFIMANGLLCKEVDGDTPIVVPKLMQTPIIR
FT                 QIHERGHFGSEKTKQLLKSDYWFKNMHQKINKVIQNCLACIMATRKTGKQE
FT                 GLLHPLDKEVLLDTYHVDHLGPMPSTQKRYQHIFAVIDAFTKFVWLYPTRS
FT                 TGTVEVLNHLMKQSAVFGNPRRIISDQGTAFTSNDFKTYCEDEGIEHITIV
FT                 TGVPRGNGQIERINRTLIPLLTKLSLPHPTQWHKFVARAQQYLNHVPSRST
FT                 GMTPFHLMFGTRMRLKEDPQIKEILETENATIFLEKRDQLREEARKAISKI
FT                 QAENRRSYNKKRKPPSSYSEDDLVAIQRTQGGPGLKLYTKYLGPYRIKRVL
FT                 RNDRYIVEKVGEGEGPRGTSTAADHMKPWANLQEDPPDNEDNDI"
XX
SQ   Sequence 4276 BP; 1478 A; 800 C; 1043 G; 955 T; 0 other;
     actgggggct cgcccgggat agaggctagt aagtgagaaa acgacgacga gaaacgaaac        60
     gacgacgaga aacgaaacaa cgacgaaaga cgaaatcacg acaaaaacga cggaaactta       120
     gccgggatag aggttagtaa actaaagacg aaagataaaa gtagaagacg acgacgatgg       180
     caaacaatga cgaaggacga aatcacgacg aaaatgacga agacgtgctg caagccgacg       240
     cgatgacggt gatccggcta aaagaagagc ttaaaagacg taagttaaag gtgtcgggca       300
     ataaagtcga tctagtagca cgactaaagg cggccttagt gctggaaggc caacacgagg       360
     aagatgacga caacgacgga tccagcgacg aagacgaagg aagcgatgcc gacgcagatg       420
     gcgccgcaaa aaacagacgc cgatcaaaat ttgtgccgac tttcaaggac gtggaagaat       480
     caattgacac attcagtgga gatgacggta caaatgtgaa gacgtggatc aaagagtttg       540
     aggatctggt caagttatgc gagtggaacg agacacaaaa gatcatctat gcgaagaggt       600
     tactgagagg ctctgcccgc ttgttcataa aatctggtga ttgcccaaag acgtggaagg       660
     ttatgaaaac tgccctgaag tcggaattca cacagagagt ggacagtcgt gcggtacata       720
     agcagctgca gagaagaaaa aaaaaagcca gcgaatccta ccatgaatac tgttacaaga       780
     tggtggaaat agctacgcga gcggacgttg agacgaaagc ggtaattcag tatattattg       840
     acggcataga cgacgaagaa tatcgtaagt ccgtcttata cggtgctaaa actattcgcg       900
     aattaaagga caaattcgat acttatgtag aaatgtgtgg tagaataaaa acaaagtcga       960
     acgaaaataa aaagaaatcg ccggtggaaa gtaaagttgt gaaacaaaac ggaaaacgct      1020
     gttataattg tggtgacagt aatcatttaa gtgcagtatg cccgtcgaaa gggcaaggcc      1080
     tgaaatgttt cggttgtaat aaatacggtc acatagcggc gaaatgcccg gagagtgcag      1140
     atgcggaaaa gaagaaaagt tgtaacgtaa tacagtccga ttccggaaaa tgccgtaaag      1200
     acgtaattat aaacaatacg aagttgagcg cgataatcga ttccggtagt gatatcagtc      1260
     tgatgtgtga agaaaattat aaacaagtcg gatcgccggt cttaggaaat cgtacgatta      1320
     gattccgagg agcaggttcg ggagaaaaca cgacgttagg agatatgcgc ttaaaaatct      1380
     gtatcgatat ggaaatatat gatatcattg tgcatcttgt tcgcgacgaa ataattccgc      1440
     acggtgtgct cataggatcc gattttttga acggtgtcga agtaaatatc aaaaggggaa      1500
     tcgtaaatat ttcaaaaatc gcggatgatt ctagcgagtt cgcggaagtt tgtaaaattg      1560
     acgcggtgca aaatgacgag cacatggatt tatcgcacat cgcgaacgac gatattaaga      1620
     cagaagtagc aggcctaata aaagaatata agccgaaaaa agaggaggaa gtagatgtca      1680
     aaatgactat agttgtaaaa gacgatgttc cagtcacaca aaacgcgcgt agactatcgg      1740
     tagcggaaaa ggctgaggta gatttacaaa ttcacgagtg gcttgaagaa ggaatagtgc      1800
     gaccatcatg ttcagattac gcaagcccga tagtactggt tagaaaaaag aatgactcga      1860
     taagaatttg cgtggactat cgaaggttga acgaaaagat aattaagaat cgatatcctt      1920
     taccgttgat cgaggaccaa ttagattttt tgcaagacgc gaaggtgtat agtacgctcg      1980
     atttaaagaa cgggtttttc cacgtgccgg ttgaggaaac gagtgttaag tacactgctt      2040
     ttgttgtctc gaatggacaa tatgaatttt taagaatgcc atttggcctc agcacttctc      2100
     cagcgtattt tcaaaaatat ttttgaaaat atgtaaatgc cgtttttcgc gatttaactg      2160
     cggaaaaaat tgtaacgata tacatggatg atttgatagt accttcggtt gatgtaaaag      2220
     aaggattatc acgacttaag ctagtattaa agacggcggc tagatacggg ttatcattta      2280
     attggaaaaa atgccagtta ttaaagtcga aagtgcatta tttaggatac gtaatagaaa      2340
     acggaaagat cacgccttct gaagaaaaga ctgacgccgt gaaacatttt ccaaagccga      2400
     ccagtgtgcg cgccgtacaa agttttttag gccttacagg ctacttccgc aagtttgtac      2460
     cgcaatattc cctcatagcg cgtccactaa ccgatctgtt aaaagacgaa agaaaatttg      2520
     attttgataa ggaacaaaaa catgcgtttg atcagttaaa actggctctt agtaatagac      2580
     ctattttacg tttgtactgt ccggcggcgg agacaaaatt acacaccgac gcatccgccc      2640
     ttggtttcgg tgcaatatta cttcagcgcg atagcgagga tcggttattc cacccgatat      2700
     attatgcaag tggcaagact acgccgactg aaacgaaata cgatagttat agactagaag      2760
     tgctagccat cataaaagcg ctaaagaagt ttagggtata tttaatcgga atctcgttta      2820
     ctatagtaac cgactgtaaa gcgtttatgc agactatgaa gaaaaaggac atttgtacgc      2880
     aagtagcaag atgggcgctc taccttgaag aatttcggta ttcaatcgta catcgtcctg      2940
     gcaaaacaat gcgacatgtg gatgccttga gccgacatcc gttaccttcc gccatgctaa      3000
     ttgaagaatg tcaagatgat attttaacaa gactccgtca aaatcagcag gaagacgagg      3060
     aagtgaaaga aattgagaaa aagatgaaaa aaggacgaac agacggattt ataatggcga      3120
     atggactgtt gtgtaaagaa gtggatggcg ataccccaat cgtcgtaccg aaactgatgc      3180
     aaactcctat aatccgtcag atccatgaac gcggccattt tgggagtgaa aaaacgaagc      3240
     aactgctgaa gtccgattac tggttcaaga atatgcatca gaagatcaac aaggtcattc      3300
     aaaattgtct cgcttgtatc atggctacga gaaaaactgg caagcaagaa ggactactcc      3360
     atcccctcga taaggaagtt ctgttggaca cctaccatgt ggatcatttg ggtccaatgc      3420
     cgtcgacaca gaagaggtat caacacatat ttgcggtgat agacgccttc actaagtttg      3480
     tatggcttta tccgacgagg agcactggga cggtagaagt actcaaccat ttaatgaagc      3540
     agtcagctgt tttcggtaat cctagacgaa taatatccga tcaggggaca gcctttacgt      3600
     caaacgattt caaaacatac tgtgaagacg agggtataga acacatcact atcgttactg      3660
     gcgtaccaag aggtaacggt cagatcgagc gaataaatcg gacgttaatc ccgttattaa      3720
     ccaagctatc cttgccgcat ccgactcaat ggcacaagtt tgtcgcacga gcacagcagt      3780
     atttaaatca cgtaccaagt cggagtacag gaatgacacc attccatctt atgttcggaa      3840
     cacgaatgag gctcaaagaa gatcctcaga taaaagagat attggaaaca gaaaatgcta      3900
     ccattttcct agaaaaacgt gatcaattac gagaagaagc acgtaaagct atatcaaaaa      3960
     tccaggctga aaacaggcga agttacaaca agaagcgtaa acctccgagt agttacagcg      4020
     aagacgactt ggtagccatc caacgaacgc agggcggacc agggttaaaa ctctatacaa      4080
     agtatttagg accctatcgg atcaagcgcg tcctacgaaa cgatcgatat atcgtagaga      4140
     aagtaggtga aggagaaggc cccagaggaa cttcgactgc cgctgaccac atgaaaccgt      4200
     gggcaaatct acaggaggac ccgccagata acgaagataa cgacatctga ggacagatgt      4260
     cagtcggatg gccgag                                                      4276
//
ID   Gypsy-5_LH-LTR repbase;    DNA;    INV; 264 BP.
XX
AC   ADOQ01017645;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_LH_;
KW   Gypsy-5_LH-I; Gypsy-5_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-264
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (30-SEP-2011).
XX
DR   Genome; ADOQ01017645; Positions    6082    5819.
XX
SQ   Sequence 264 BP; 70 A; 48 C; 60 G; 86 T; 0 other;
     tgtaggattt agatttaaat ttagcgctat attatttgtt ttcgaaaaaa cgttgcgact        60
     tggcgtgacg agcgcgacac cgtcgccgcg acgagcttct tttttttggg agaagggaca       120
     ttacgaggct ggcagcagta gagccgagtc gagaaagtga cgtgtgtgcg acaagacttg       180
     attaaacctc tcatttacga gatttatgcc tcattgatcc cactttattt tactttgatt       240
     cttgaataaa ataacttttt taca                                              264
//
ID   Gypsy-5_LMi-I repbase;    DNA;    INV; 4617 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_LMi-I;
KW   Gypsy-5_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4617
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3367-3367 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3291-3767] - Integrase core
CC   'AAAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..1044
FT                 /product="Gypsy-5_LMi-I_1p"
FT                 /translation="MTVLEQILANLVEQQKLLNEQHKQLAEPLTVIAAALQ
FT                 QLLAAANNNNSRLPALNIPMFAPYEDTAEDWTDYEKRLRQHFLAFSVDDHQ
FT                 LRKSLFLSWISPKLYQILTQLAPLKEPSSLTFDEMCSLLTAYYSKQTHVIA
FT                 SRVAFYQSKKKPGQTYRAWAAELQGLSRKCQFITEVHRESYAHHMVRDAIL
FT                 RSAPDKEVRQRALQLDNPSLDDVLNIAQTFEVTRAAGAQIDSWGDVCDVQS
FT                 DRPLVDNLPTLRKRKLLLSNRSMPVRSLSRKLVSKIDRLYPLVPAASGSMH
FT                 EKIAHSVGPCVINAIRRVTLRKYVGPTLSKPYKMTR"
FT   CDS           1116..4316
FT                 /product="Gypsy-5_LMi-I_2p"
FT                 /translation="MLGIDVHMQVDTGSAATIITYQTYASLGSPPLSPVTR
FT                 RLRTYNRQQISLLGQLDVDVSYKSVVRNITVFVVDQSGTDNLFGYDAFRTF
FT                 GFSVDDAVHVVSDEIPYSQLDSLSAEFSDLFSPGLGRAKNFEAHITLKPAA
FT                 RPKFFRARPIPVALRDSVKQEIDRLTASGVLLPIAASEWAAPLVVVRKPNG
FT                 SLRLCGDFKVTVNAQSLIDTYPMPRHEEMFAKLAGGQFFSKIDLSEAYHQL
FT                 PLDGASRTFLVLNTPFGLYQYQRLPFGVASAPAIFQRFLEQLLATVPGCVN
FT                 YQDDIVVTGATTAEHINNLCTLFSVLQENGIKCNFQKSKFFQPSVVYLGFQ
FT                 LSREGIRPLKDDIEAIEALPRPTNVKELQAFLGAIAYYHRFLPSVADIAHP
FT                 LHNLLRKNVPFHWSEDCEAAFKRLKTLLHTAPCLATYTPGQMLVLATDASQ
FT                 HGIGAVLAHRYQDGTERPIAYASKTLNASQQKYSQIEKEALAIIYALQKFS
FT                 VFLYGSKFHLITDHKPLVSLFNPTASLPDKAAHRLQRWALYLSRFHYDIHF
FT                 RPTTEHANADVLSRLPKGPDPTFDRSEILCFHLDETEQRVVDGFPITGERI
FT                 AAATDTDPVLRQVLRHIIHGWPDQPSKKASDPLRNYYLLRFRLTARNGVVL
FT                 LSTDDASPRVVVPSSLRREVLQLLHQGHWGVTRTKTLARRHVYWPGIDADI
FT                 AHMVAACEACASQAQAPKSSTSSWPSPARPWERIHIDFAGRFLGSYWLLVI
FT                 DAYSNFPFVVRVTAPSTAATTAALTKIFALEGLPTTIVSDNGPQFTSSEFS
FT                 TFCNTRGIKHITSPPFHPQSNGEVERLVRTFKNQMKKLLTSASTDEALIDF
FT                 LASYRFTPLGTHSPAELMHGRQPRTLLHLIRPPTNRPSPATAGNFSSSDPV
FT                 WVRGYGKQQKWIRGRVIEAHGRRLYTVRTADGDVARHVDQMRRRVLPMHDT
FT                 PPAGQPDSMDMEVDFTPPLVTQPSPAHQAVLQDAASPHTPAAASQGGDATP
FT                 PSPVFPPLRTTQLPTLSKDMSPILGSRHPQRAGHFRPYSRVLPRTFAPAAD
FT                 NTMDVGAVRV"
XX
SQ   Sequence 4617 BP; 1108 A; 1389 C; 977 G; 1143 T; 0 other;
     cttttagtgg cgacgagtca gggattttta caaagttccg cccacgccct tagtgacaac        60
     atgacggtgt tagaacaaat actcgcaaat ttggtggagc agcagaagct actcaacgaa       120
     cagcacaagc aacttgcaga acctctgaca gtcattgccg ctgccttaca gcaacttctc       180
     gctgccgcca acaacaacaa cagccgactg ccggccctga atattccgat gttcgcaccc       240
     tacgaagaca ccgctgaaga ttggacagac tacgagaagc gtctgcgtca gcacttcttg       300
     gctttcagcg ttgacgatca tcaacttcgt aagtctctat tcctatcttg gatttctccc       360
     aaattgtatc aaattctcac tcaattagcg ccgttgaaag aaccctcatc cctcacattt       420
     gacgagatgt gttccttgtt gacggcttat tatagcaaac agacgcatgt catagcctcc       480
     cgtgtggcgt tctaccagag taaaaagaaa ccaggacaga cctatagggc atgggccgca       540
     gaattacagg ggcttagccg taagtgccaa ttcataactg aggttcatcg ggaatcctac       600
     gcccaccaca tggttcgaga tgcaatcctc cgctcagccc ccgacaaaga agtcagacaa       660
     cgagctctcc aacttgacaa tccttcatta gatgatgttc ttaatattgc tcaaaccttt       720
     gaagtcacaa gagctgcagg ggcacagata gattcgtggg gtgacgtatg tgacgtgcag       780
     tctgataggc cccttgttga caacttaccc acgctgcgga agaggaagtt gctgctatcc       840
     aaccgcagca tgcccgtaag aagtttaagc agaaaactag tctcaaaaat agacaggctc       900
     taccctcttg tccccgctgc ttcaggcagc atgcacgaga agattgccca cagcgttggg       960
     ccgtgtgtca taaatgcaat aagaagggtc acgttgcgca agtatgtagg tccaacactg      1020
     tccaagccgt acaagatgac gaggtagcag acgattctgt cttctgtgtt aactcgacac      1080
     tctcttcctc aaacaaattg tacatagatg taaaaatgct aggcatcgat gttcacatgc      1140
     aagtcgacac cggatccgcc gctaccatca tcacttatca gacgtacgcg tccttgggtt      1200
     caccacctct gtctccagtt acacgtcgtt tgcgtactta taaccggcaa cagatatctc      1260
     ttttgggaca gctggatgtg gatgtctcct acaagtcggt cgttcgaaac atcactgttt      1320
     tcgtggttga tcagtcaggc accgacaatt tatttggtta cgacgccttt aggacctttg      1380
     gtttctccgt tgatgacgct gttcacgtag tgtctgacga aattccctac tcacaattag      1440
     attccttatc cgccgaattt tcggatctct tctcgccggg gttaggaagg gcgaaaaact      1500
     tcgaagctca cattactctc aaacccgcgg cacgaccaaa atttttccgc gcacgtccca      1560
     ttccggtcgc gctgcgcgat tctgttaaac aggaaattga tagactcacc gcctccggcg      1620
     tccttttacc cattgctgcc agcgaatggg ccgcgcctct tgttgtcgtg cggaaaccta      1680
     atggttctct tcgcctgtgt ggcgacttca aagttacggt aaacgcgcaa agcctcattg      1740
     acacataccc catgcctcga catgaagaaa tgtttgccaa gttagcaggc ggacaattct      1800
     tttccaaaat tgatctgtct gaagcttatc accagcttcc cctagacgga gcgtcacgca      1860
     catttcttgt tctgaacacc cctttcggtt tgtaccaata ccagcgctta ccgttcggcg      1920
     tggcaagcgc ccctgctatc ttccagcgct ttcttgaaca gttgctcgcc acggtacctg      1980
     gctgcgtcaa ctatcaagac gacatcgttg tcacgggcgc caccacggcc gaacacatca      2040
     ataacctatg caccctattc tcagttctcc aggaaaacgg catcaaatgc aattttcaaa      2100
     agtccaaatt tttccaaccc tctgtagtct acctggggtt tcagctgtcc cgggagggca      2160
     tccggccgct caaagacgat attgaggcaa tcgaagctct tcctcgcccc acgaacgtca      2220
     aagagttgca ggcctttctg ggcgccattg cctattacca ccggttcttg ccgtctgtcg      2280
     cagacattgc acatcccctt cacaatcttc tccgcaaaaa cgttcccttt cattggtcgg      2340
     aagattgcga agcagcattt aaacgcctca aaaccctctt gcataccgcc ccatgtctgg      2400
     ctacctatac accaggtcaa atgcttgtac ttgctaccga tgcctcacaa cacggcatag      2460
     gggcggtact cgcgcaccga tatcaggacg ggaccgaacg cccaatcgcc tatgcctcaa      2520
     agaccctaaa tgcctcacaa cagaaatact ctcaaataga aaaagaggcc ctcgccatca      2580
     tttatgctct tcaaaaattc agcgtttttc tatatgggtc aaaattccat cttatcaccg      2640
     atcataaacc tttagtgtct ctcttcaacc ccacggcgtc ccttcccgac aaggctgccc      2700
     acagacttca acgttgggcc ctgtatctat cccgttttca ttacgacatt cacttcagac      2760
     ccacgaccga gcacgcaaat gccgacgttt tgtcgcgcct tcccaagggc cctgacccaa      2820
     catttgaccg cagtgaaatt ctgtgtttcc atctggacga aacagaacaa cgagtagtgg      2880
     atggttttcc tattacgggc gaacgtatcg cagcagcaac agatacagac cccgtacttc      2940
     gtcaggtcct ccggcatatc atccacggct ggcccgatca accttctaaa aaagcttccg      3000
     accctcttcg taactactac cttttacgct ttcgccttac tgcacgaaac ggcgttgttc      3060
     ttctatccac tgacgacgca tcgccgaggg tggtcgtccc atccagcctt cgccgtgaag      3120
     tcctgcaact cctgcatcag ggccactggg gtgtcacccg caccaaaaca ttggcgcgca      3180
     gacacgtcta ctggccgggc atcgacgccg acatcgccca catggttgct gcgtgcgagg      3240
     catgcgcctc ccaggcgcaa gcacctaaga gctccacttc gtcgtggccc agccccgcac      3300
     gcccatggga acgcatccac atcgactttg ccgggcgttt tctcggctcc tattggctcc      3360
     tcgtcataga cgcctactcc aattttccgt ttgttgttcg tgtcaccgca ccctctacag      3420
     cagctaccac agctgcacta acgaaaatat ttgccttgga aggactaccc accaccatcg      3480
     tttctgacaa tggcccccaa tttacatcct ctgaattttc aaccttttgt aacacgaggg      3540
     gcatcaaaca catcacctct cccccattcc atccccagtc caatggggaa gtcgaacgac      3600
     ttgtcagaac ttttaaaaat cagatgaaga agctcctcac ctctgcctcc accgatgagg      3660
     cactcatcga ctttctggcc tcttatcgct ttacaccatt gggcactcac agccccgctg      3720
     agttaatgca cggcagacag ccgcgcacac tacttcatct tatcagacct cccacaaacc      3780
     gtccctctcc ggctaccgcc ggaaactttt cctccagcga tcccgtctgg gtgcggggct      3840
     acggcaagca acagaaatgg atccggggcc gcgtcataga agcacacggg cgccgcctct      3900
     acaccgttcg cacggccgac ggagatgttg cccgacacgt cgatcagatg aggagacggg      3960
     ttctgcccat gcacgacacg cctccagccg gccaacccga ctctatggat atggaggtag      4020
     acttcacgcc gcccctggtg acccagccct cacccgcaca tcaagccgtg ctccaggatg      4080
     cagcatcacc tcacacccca gctgccgcat cacagggtgg ggacgccaca ccaccgtcac      4140
     cggtgtttcc ccctctacgc accacgcagc taccaaccct ctccaaagac atgtcaccaa      4200
     tactgggctc tcgacatcca caacgtgccg gtcatttccg accttactcc cgggtccttc      4260
     cgagaacctt cgcaccggca gcagataaca ccatggacgt cggtgcagta cgagtgtaac      4320
     acagtgcagt ggttgagcca aagttttttt ttttcttttc tttctttcct tccagcgttc      4380
     acaaatttgc gtcgaggaaa gacgagtgtt ttattttttt ttttttttgt gtttcttttt      4440
     ctcacaaatg tcccgcagac ctacatagct cacgggtact gtcaacaata tttccaatgt      4500
     gtccatatca ttacttgtaa ttatctattg tatcttgctg aagttttttt gctttttcat      4560
     tgtatttatg tactgtcggc aaacaacatt acttttgttt cacaaagggg ggagatg         4617
//
ID   Gypsy-5_LMi-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_LMi-I;
KW   Gypsy-5_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3368-3368 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 226 BP; 50 A; 62 C; 65 G; 49 T; 0 other;
     tgttatggcc gcgtcgcatt tgaatccgcc gcctaccgcc ggtacgccaa acagccgcgc        60
     tgctaaaccg agcagcgcta acagcgccac ctgggcgacc ggcggacaca agcgggctga       120
     gatgcggcag cgggcagtgc atgtttggtt tccaaccgga aaggtttagc tgactttcgt       180
     ttatgtaccg cgtgtgtgat ttaataaagt gttctaagtc acaaca                      226
//
ID   Gypsy-5_MeUr-I repbase;    DNA;    INV; 4480 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4480
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3040-3040 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..4288
FT                 /product="Gypsy-5_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSIGSIGPFNLVKDDWDLYIDRLDQYFIANDVKAVLK
FT                 VATLITVMGSEAYELMVNLCTPEKPASKTYTELVTLLKNHLQPRPSLLAER
FT                 FKFRLRFQKEDENVAEYAAELKRLSKDCKFTADSLKENLRDQFVCGLINDN
FT                 IRQRLFTEDNIEFDTAYKIAVAMESAERQAALVDVRTGRESTSTAAVPIHT
FT                 VLSSVKKEHGERNTNRRESLDRDSTSDVKRAIKQRGSPKPRSIMWPGAGAR
FT                 GGRAGVITGSGGMREHNTAGATIQQTFNMQCEVCGGRHEAKSCKFRAYVCR
FT                 VCNRQGHLKRVCTVWRKNSNLYNIKEHKVLYSDSEESNSEVNNFSIEINNL
FT                 KRFVPYTVDIFVNKCKLTMEIDTGSAISCISQKCYKQYFADCKLDKSDLKL
FT                 RYYTGEIVEPLGMFTPLVKYKDICKCLNLYVIQNGKASLLGRQWLNELLIN
FT                 FPQVLCQNISLENKQFSMNEFSSRFCEVFADGLGRFTGGTVGFRLREGARP
FT                 MFMRARPLAYALRKPVERELDRLVKDGVITPVATSDWATPIVPVMKRDGSI
FT                 RICGDFKLTLNKCLEVDRFPLPRVEDLLTKLYGGEKFTKIDLSQAYAQFEL
FT                 DDSKKYTVISTHRGLFMYNRLIYGLASSPGIFQRKLEQLFGDMPMVGIFLD
FT                 DIIITGKNDQEHMATLNEVFQRLKEWGLKIKKDKCVFFAHSVTYLGFVISK
FT                 HGVHTCPKKIEAIKKVPIPENVSQLRSLLGLVMYYAKFVPNISTILSPLYL
FT                 LLRKDVKFVWSSDCDRALSRVKELLTSSEVLAHYSAEQPLVLTADASSVGV
FT                 GAVISHLAPDGERPIAYASRSLNTAERAYSQIEREALAIIFGIKKFHQYLY
FT                 GRDFTLRTDHKPLVTIFGDKAGIPVMAASRMQRWAILLAGYNFKIEYVRSE
FT                 RNAADALSRLPVGSAVKHTQQSTYINFIQDFFPIDRKAVEENLKKDEILNK
FT                 VMLFIHTGWPNKCVDNDLRPYFVRRNELYLDMGCIVWGYRLIIPKALREYL
FT                 LKELHIGHMGIVKMKSIARSVIWWPGIDADIENTCRSCATCAAEGAAPPRA
FT                 PPQPWPYLTVPWSRLHVDFLGPFNGKTFLVVIDSTTKWLEVFYMPRTTATA
FT                 VIKVLRETFARFGLPTEVVSDNGPPFTSKEYYNFMANNGIKVTFTAAYHPS
FT                 SNGAAEGAVKLCKRAVKKSIRDGCDMDAALQAYLMAYRNVEHSTTGVSPAM
FT                 LLQRRSLRSRLDLLQGNRQVEEKVRLSQHKQVQQAGGSYRILNIGDSVWVK
FT                 DYSGGNTNRWIEGYVDAKIGSRNYFINGTNGQTYKRHIDQIKVRGLNGYHL
FT                 PSPQPTPRSVPTDSDHTVIPDPDNQSETKLQGNVLDAEGTSPDNAIAITEG
FT                 QQRVNPLPGVASPENILRPDLRPKRTLVRPKRYGFEID"
XX
SQ   Sequence 4480 BP; 1419 A; 752 C; 1108 G; 1200 T; 1 other;
     gtggcgacga gaaatatcgt agacacgcgt gtatacatat ataaatcggg ggtgctacag        60
     acagtgtggt ggtagtgagt gaaaaatgtc gatcggatca atcgggccgt ttaacttggt       120
     caaagatgac tgggatttgt atattgatcg attagaccag tatttcatag caaatgatgt       180
     gaaggcggtg ttgaaagtag ctacgttgat tacagttatg ggaagcgaag cgtacgaact       240
     tatggtgaac ctgtgtaccc ccgagaaacc tgcgtctaaa acgtatacgg aactggttac       300
     attattaaaa aatcatttac aacccaggcc cagtttatta gcagaacggt ttaagttccg       360
     gttacgtttc caaaaagagg atgaaaacgt ggcggaatat gcggcagaat tgaaacggct       420
     atctaaggac tgcaagttta cggcggacag cttgaaagaa aatttgcgtg atcagtttgt       480
     ttgtgggtta ataaatgaca atatccgaca aaggcttttt accgaagata atattgaatt       540
     tgatactgcc tataaaatag cggtagcgat ggagtcggca gaaaggcaag cggcattagt       600
     agatgttcgt acgggaagag aaagcacatc gacagcagcg gttccgatac atacagtatt       660
     atcaagtgta aaaaaagaac atggcgagag gaatacgaac cgccgagaat cgttagacag       720
     ggacagcaca agtgacgtca agcgggcgat aaagcagcgc ggctcgccaa agccaaggtc       780
     aatcatgtgg ccaggcgcag gcgcgcgggg cggacgcgca ggagttatca caggtagcgg       840
     aggcatgcgc gaacataata cagctggcgc gacaatacaa caaacattta atatgcaatg       900
     cgaagtatgc ggagggcgac acgaagctaa atcatgcaaa ttcagagcat acgtgtgcag       960
     ggtgtgcaac cgtcaggggc atttaaaaag agtttgtaca gtttggcgta aaaattcaaa      1020
     tttatataac ataaaggaac acaaggtgtt gtattcagat agcgaggaga gcaacagcga      1080
     ggtaaataat ttttcaatag aaattaataa tttaaaacgg tttgtaccgt atacagtaga      1140
     catttttgtg aataagtgta agttgactat ggagatagat actggaagtg cgatatcatg      1200
     catcagtcag aaatgttata aacagtattt tgctgattgt aaactagata aaagtgatct      1260
     taagttacgg tattatacgg gtgagatagt agaaccatta ggaatgttta cacctttagt      1320
     aaaatacaaa gatatttgta aatgtttaaa tttatatgtt atacagaatg gcaaagcgag      1380
     cttgttaggc agacagtggt tgaacgaatt attaattaat tttcctcaag tattatgtca      1440
     gaatataagt cttgaaaaca aacaatttag tatgaatgaa ttcagttcca gattttgtga      1500
     agtgttcgct gacggcctcg ggagattcac cggtgggacg gtggggtttc gtttgcgaga      1560
     gggcgcacgg ccgatgttta tgcgggctcg tccactcgca tatgcgttgc gcaagccggt      1620
     ggaacgcgaa ctggatcgac tggtgaagga cggtgtgatc acgccggtcg cgacttcgga      1680
     ctgggccaca cccattgttc cggtaatgaa aagagatggt tcaattcgaa tatgtggtga      1740
     ctttaaactt actttaaata aatgcctaga ggttgaccgt tttccattac ctagggttga      1800
     agatttattg accaagttat acggaggaga aaaatttaca aagattgact tgtctcaggc      1860
     ctatgctcaa tttgaactag atgattcaaa aaaatataca gtaataagta cgcacagggg      1920
     tctctttatg tacaatagat taatatatgg cttggcctct agtccaggaa tatttcaaag      1980
     aaaacttgaa caattatttg gggatatgcc tatggtagga atattcttag acgatatcat      2040
     tattacaggc aagaatgatc aagaacatat ggctacatta aatgaagtat ttcaaagatt      2100
     aaaagaatgg ggacttaaaa ttaaaaaaga taaatgtgta ttttttgcgc attccgttac      2160
     atatttaggt tttgttatta gtaagcacgg tgtgcataca tgtccgaaaa aaattgaggc      2220
     aattaaaaag gtgcctatac cggaaaatgt atcacaactg aggtcattgc tggggctagt      2280
     catgtattac gcgaaattcg ttcccaacat tagcacaata ctttcaccgt tatatttatt      2340
     gttaaggaag gacgtaaagt ttgtatggag tagtgattgt gatagggctt taagtcgggt      2400
     aaaagaatta ttaacgtcga gtgaagtttt agcgcactac tcggccgagc agccgttagt      2460
     actgacggcg gatgcgagca gcgtgggcgt gggcgcagtc atctcgcacc tcgcacctga      2520
     cggcgagcgg cccatcgctt acgcttcgcg ttcattgaac accgcagaga gggcctattc      2580
     acaaattgag cgggaagcat tagcaattat tttcggtata aagaaatttc accaatattt      2640
     atatggtagg gattttacac tcaggaccga tcacaagcca ttggtaacta tttttggcga      2700
     taaggctggt ataccagtta tggcggccag tcgaatgcaa cggtgggcaa tcttactagc      2760
     gggatataat tttaaaattg aatatgtgcg tagtgagagg aatgccgcag atgccttgtc      2820
     tcgattaccg gtcgggagcg ccgttaaaca tacccagcag agtacttaca tcaattttat      2880
     tcaagatttt tttcccatag atagaaaagc ggttgaggaa aatttaaaaa aagatgaaat      2940
     tttaaacaaa gttatgttat ttatacacac aggctggccg aataaatgcg tagataacga      3000
     tttacgacct tattttgtta gaagaaatga attatattta gatatgggct gcatcgtatg      3060
     gggataccgc ttaataatac ctaaagcctt gagagaatat ttgcttaaag agttacatat      3120
     aggtcacatg ggtattgtta aaatgaaaag catagctcgt agtgtgatct ggtggccggg      3180
     catcgatgcg gacattgaaa atacttgcag gagttgcgcg acgtgcgcgg cagagggcgc      3240
     tgcgccgccg cgcgcccckc cgcagccgtg gccgtactta accgtcccgt ggtcgagatt      3300
     gcatgtagac tttttgggcc cgtttaatgg taagacattc ttagtcgtta tagattcaac      3360
     aactaaatgg ttggaagttt tctatatgcc aaggactacg gcaacggcag ttataaaagt      3420
     attacgcgaa acattcgctc gttttggttt gcccacggag gttgtatctg ataatggccc      3480
     tccctttaca agcaaagaat attacaattt tatggcaaat aacggtataa aagtcacgtt      3540
     tacagcagct taccatccat cttccaacgg agcggccgaa ggggcggtga agttgtgtaa      3600
     acgggcggtt aaaaaatcaa ttagggatgg gtgcgacatg gacgccgcgc ttcaagcgta      3660
     tttaatggcg tatagaaatg tggaacatag tacgacagga gtgtccccag ctatgctatt      3720
     gcaacgcagg agtttacgtt cacggcttga cttgttgcag ggaaatcgac aagtagaaga      3780
     aaaagtcaga ttaagtcagc ataaacaagt gcaacaggca ggtggctcct accgaatatt      3840
     gaatattggg gatagcgttt gggtgaagga ttattctggg ggaaatacta ataggtggat      3900
     agaaggatat gtagatgcaa aaatagggtc ccgtaattat tttattaatg gaacaaacgg      3960
     tcaaacttat aaaaggcata tagatcaaat taaggttagg gggttaaatg gttaccactt      4020
     accatcaccg caacctacac ccaggagtgt gccaacggat agtgatcaca cagttattcc      4080
     cgatccagac aaccagagtg aaacaaaatt gcagggaaac gttttagacg cggaagggac      4140
     gagtccggat aacgccatag caataacaga agggcagcaa cgcgtcaatc ctttacctgg      4200
     ggtagcttca ccggagaata tcttgaggcc tgatttaaga ccgaaacgta cgcttgtgcg      4260
     tcctaagaga tatggattcg agatagatta attgtgttta agtgtaagta agtgtaatat      4320
     ttatatgtat acgatatgta ttaatattat ataaggaggt caaattgtta ttagtttaag      4380
     agaattagca tttattacaa ataatcaaac attgtaatta tatttaaatt agacatatgt      4440
     attattttgg tttcctataa gggttaatta aaggtggagg                            4480
//
ID   Gypsy-5_MeUr-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-151
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3058-3058 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 151 BP; 40 A; 21 C; 32 G; 58 T; 0 other;
     tgttatgtat gggtagttaa gaatattttt tatatgtaat aaaaatgtag gtaggatgtc        60
     ttccctcctc ttctgattaa acgtggacga caacggatgt gttttctttg tatgcgattc       120
     ctagttaggt cagtcagtct agaacttatc a                                      151
//
ID   Gypsy-5_MoPha-I repbase;    DNA;    INV; 4312 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4312
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1157-1157 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..762
FT                 /product="Gypsy-5_MoPha-I_1p"
FT                 /translation="MALIGSIEPFNSKESDITTYLERIEQLFVCNDINEAK
FT                 KVSVFLTLIGGDAYGVLKDLLAPSLPSTKTYEQLKKSLSSHYSPKRLTIAE
FT                 RYKFXSAKQETEEDVKAYAVRLKNLAKYCEFATFLEEALRDKFVCGIRSEG
FT                 VKRKLLTEDNLTFNRAYELAVGMELAEGQVKIMGPETISINKLRYQREGQS
FT                 KGASSQGSGVKGQNQGQKTAGN"
FT   CDS           674..4273
FT                 /product="Gypsy-5_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GINEKVSQKVHPVKVVESRAKIKGKKQRATKPSHSQL
FT                 ASRVKCKRCLRVHFEGNKCPAINWTCYSCQQTGHTAKSPLCKNRVHSLQSE
FT                 ESEIGXSSAVEDEESLELGLIQESTEGELYHVHSVTKSRENESLKVALHIE
FT                 NKLMTMEVDSGACKSVIHVNDYNKWLSHLALRSVSFKLRVVTGEKVEIVGQ
FT                 VXVRVRYTTETFKLPLIVLNGKTKFIPLLGRNWLNVLNPKWREVINMPLII
FT                 KSVSQCKVESSQVDHSGEAANSRKRLVLSIRSQFGAVFKEESNTSIKNFKV
FT                 DVKLKEKANPIFHRAYQMPFALKPKVEEELSRMVEEGILSKVTHSRWASPI
FT                 VVIPKKNGKDVRICVDFKKTLNTVIDTEHCVLPLPEDIYANLSGSRCFTVI
FT                 DLKGAYQQLAIGDSSKELFTINTHLGLFRYNRLTFGVXSAPGIFQSIMESI
FT                 LAGLKNTQCYLDDILVHGATVEQCYRRVCEVFKRLAEYNVKVNAEKCKFFX
FT                 TKVEFLGHMVDANGIHPTGEKIECIQKAPAPTNVTQLKSYLGLLSYYRKFI
FT                 PMLSAKLKPLYELCNTGSEFRWNDECEKTFQSSKKLLTSDEVLTHFDPTLP
FT                 IVVTCDSSGYGVSAVLSHIIEGKDKXVLFASSTLSPAEQKYSNLERESLAL
FT                 IFSLKKFHKYIYGRRFILLTDHQPLQFIFGKNKGIPVTAAARITRWALTLS
FT                 AYDYEIRYKKGKLIANADGLSRLPMSASTEIPGYLNSFSLLNTVPLHAGDV
FT                 ARATQKDRVLTKVIEFTLSGWARDVEXEALKPYFTKRHELSVENNCLLLGN
FT                 KVIIPESLRTEVLNLFHEQHVGIVRSKMLLRAYCWWPGINDDVEKFISSCE
FT                 VCQQTQNFSNSSTLLSWPTAPNVFYRVNIDFFHKYNHTFLMVSDSKSKWIE
FT                 VKLMDHGSXASETILKLKEVFAVYGLPVELVSDNGPPFNSSEFSAFCQANG
FT                 IKPVKSPPYHPQSNGSAERSIQTVKKGLERALFTEKGRDIGKNVLLTRLIN
FT                 FLFTYRNTPSTVTGKSPAENILKMRPGTRFDLIKPFSKEITMGHKGDAKEI
FT                 RLYTLNEPVYVKNIPLKMWEKGKIIKVLSHSTYLVQIADKIRFVHANDIRV
FT                 NPYMAGGADGETQPSITEQPMAVDYNKGNVSAKDEQGEEEVPACKEEIVEE
FT                 QASSQRSISKSNNYPSLESSTSKTYSTRSGRIVKPPARLTL"
XX
SQ   Sequence 4312 BP; 1431 A; 759 C; 1001 G; 1112 T; 9 other;
     gtattttggc gacgaataaa gaacctacat agcgtatggg aatcgaatag tcaaacccat        60
     cagagaccac gtcgaaaagc taatcgaaaa tttaagtgga aaagcaagat cgtgttctta       120
     tagaaaatgg cactcattgg gtcaatcgaa ccattcaatt cgaaagaatc ggatatcaca       180
     acatacttag agcgtatcga acaattattt gtctgtaatg atataaacga agcaaaaaaa       240
     gtgtcagttt tcctaacctt aatcggagga gatgcgtatg gagtattaaa agatttattg       300
     gcaccgtcat tacctagtac gaaaacgtac gagcagctta agaagtcatt gtcgagtcat       360
     tacagtccaa aacggttaac tatagctgaa cgttataagt tttawtcagc caagcaggag       420
     acagaggagg atgtgaaagc atatgccgtc agattgaaga acttagctaa gtattgcgag       480
     ttcgctactt ttctcgaaga agcacttcgc gataaatttg tatgtggaat acgttcagag       540
     ggagtcaaac gaaaattgtt aacggaagat aaccttactt ttaatagggc gtatgaattg       600
     gcagtgggca tggaattagc ggaaggtcaa gttaaaatta tggggccaga gacaatttcg       660
     atcaataaat taaggtatca acgagaaggt cagtcaaaag gtgcatccag tcaaggtagt       720
     ggagtcaagg gccaaaatca agggcaaaaa acagcgggca actaagccaa gtcatagtca       780
     actagcgagt cgagtcaaat gcaaacgatg tcttcgcgtg cacttcgagg gcaacaagtg       840
     tccagctatc aactggacct gttattcttg ccagcagacg ggtcatactg caaagtcacc       900
     attatgcaaa aatagagtcc acagtctgca atcggaggaa tckgaaatcg gtkttagcag       960
     cgcagtcgaa gatgaagaat cattggaatt gggcttaata caggagtcta cggagggtga      1020
     actgtatcat gtacattccg ttacaaagtc gagagaaaac gaaagtctga aagtcgcgtt      1080
     acatatcgaa aataagttaa tgactatgga agttgattcg ggtgcatgca agtcggtcat      1140
     tcacgtcaac gattataaca aatggttgtc gcatttagcc ttaagatctg taagttttaa      1200
     gttaagagtc gtaacaggcg aaaaggtaga aattgtcggt caagtcktag tcagagtcag      1260
     gtatacgacc gaaacattta agctaccatt gattgtgttg aatggaaaaa ctaaatttat      1320
     tcctttacta ggtcgcaatt ggttgaatgt attaaatcca aagtggagag aagtaattaa      1380
     catgccttta attattaagt cagtcagtca atgtaaggtt gaatcaagtc aagttgatca      1440
     ttctggggaa gctgcgaata gtcgaaagcg gttggtatta tctatcaggt cacagtttgg      1500
     agcggttttt aaggaggaat caaacaccag catcaaaaat ttcaaggtcg atgtaaagct      1560
     aaaagaaaag gcaaatccaa tattccaccg tgcgtaccaa atgccatttg cgctcaagcc      1620
     taaagtcgaa gaagaactat ccaggatggt ggaagaagga atattaagta aggtaactca      1680
     cagtcgatgg gcaagcccca ttgttgtcat acccaagaag aatgggaaag acgttaggat      1740
     ttgtgtcgat tttaaaaaaa cgttgaacac tgtcattgat accgaacatt gtgtactacc      1800
     cctaccggaa gatatttacg ctaaccttag tggaagtcga tgtttcacag tcatcgatct      1860
     taaaggagca tatcagcaac tcgcaatagg ggacagttct aaagagttgt ttactatcaa      1920
     tactcatttg gggctgttca gatataatcg attaacgttt ggtgtaagst cggccccggg      1980
     aatatttcag tcaattatgg aaagcattct tgctggcttg aagaatactc aatgttatct      2040
     agatgatatc ctggttcatg gagctacagt ggaacaatgt tatcgccgag tttgtgaggt      2100
     tttcaaacgt ctagcggaat ataatgtcaa agtcaacgcg gagaaatgta aattttttka      2160
     aacaaaggtt gagttcttag gacacatggt ggatgccaat ggaattcatc cgaccgggga      2220
     aaaaatagaa tgtatccaga aggcaccggc accaactaat gtgactcagt taaagtcgta      2280
     cttgggattg ttaagttatt acaggaaatt catccctatg ttgtcggcga agcttaaacc      2340
     attatatgag ttatgtaata caggaagtga attccgttgg aatgacgagt gtgagaaaac      2400
     atttcaatca agtaaaaagc tgctcacatc ggacgaggtg cttacgcact ttgatccaac      2460
     gctaccaatc gtggtcacgt gcgactcgag tggttacgga gtaagcgccg tactaagtca      2520
     tataatcgag ggaaaagaca agsctgtttt gtttgcctca agcacgttgt cgccagcaga      2580
     acaaaaatat tccaatttgg aaagggaaag ccttgcgctg atatttagtc taaagaagtt      2640
     ccacaaatac atctacggcc gaagatttat tttgttaaca gatcaccaac cacttcagtt      2700
     tatttttggg aaaaacaaag gaattccggt aacggcagcg gcacgcatca cgcgatgggc      2760
     tttaacattg tcagcgtatg attatgaaat tcggtataaa aagggcaagc ttattgctaa      2820
     tgcagatgga ctatcacgtt taccgatgtc ggcaagtacg gaaatcccag gctacttgaa      2880
     ttcgtttagc ttgttgaata cagtaccact acatgcagga gatgtggcaa gagccaccca      2940
     aaaggataga gtgttaacta aggttatcga attcacacta tcgggatggg caagagacgt      3000
     ggaagawgag gcgttaaaac catattttac caagaggcat gaactgtcag tcgagaataa      3060
     ttgtttatta ctgggaaaca aggtgatcat tcctgagtcg ttgagaacag aagtactaaa      3120
     tcttttccat gagcaacatg tgggtatcgt ccgctcgaag atgcttttaa gggcctattg      3180
     ttggtggcca ggtataaatg acgacgtcga aaaattcata tcatcgtgtg aagtttgtca      3240
     acaaacacaa aacttttcga acagtagcac cttgctttcg tggcctacag cgccaaatgt      3300
     cttctataga gtcaatattg acttttttca taaatacaat cacacattct taatggtgag      3360
     cgacagtaag tcaaagtgga ttgaggttaa gctaatggac catggatcaa magcaagcga      3420
     aaccatttta aaattaaaag aagtgtttgc agtgtatggt ttaccagtgg aattggtctc      3480
     agataatggt ccgccattca attcatcgga gttcagcgca ttctgtcagg caaacggaat      3540
     taaaccagtc aagtctccac cgtatcaccc ccagagtaat ggtagcgcag agaggagcat      3600
     tcaaacagtt aaaaaaggat tggaaagagc attgtttacg gaaaaaggga gagatatcgg      3660
     caaaaacgta ttattgactc gtttgataaa cttccttttt acgtatcgaa acactccatc      3720
     aacggtaacg gggaaatctc ccgcggaaaa tattcttaaa atgagacccg gaactcgatt      3780
     tgacttgatt aaaccctttt ctaaagaaat aactatgggc cacaaggggg acgcaaaaga      3840
     gattcgattg tatacgttaa atgaaccggt atatgtaaaa aatattccgt tgaagatgtg      3900
     ggaaaaaggt aaaattataa aagtgctaag tcactctact tatctcgttc aaatagcgga      3960
     taaaattaga tttgtacatg ccaatgatat tcgcgtgaat ccatatatgg ccggcggagc      4020
     cgatggcgaa acacaaccta gtattacgga gcaacctatg gctgtggatt ataataaggg      4080
     aaatgtttcg gcgaaggatg aacaggggga ggaggaagtt ccggcctgta aggaagaaat      4140
     cgtggaagag caggctagtt cgcaaagatc gatcagtaag agcaataatt atcctagtct      4200
     ggaaagtagt acttccaaaa cttactccac tcgctcgggc agaattgtaa aaccgccggc      4260
     aagattaact ttataagtgt actctgtgac agtatgtaag aagggggaga aa              4312
//
ID   Gypsy-5_MoPha-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-163
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1169-1169 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 163 BP; 44 A; 26 C; 41 G; 52 T; 0 other;
     tgttatgttg gtactttgta tccctatgat gataatacta tgtacgggac tgagggacgc        60
     catgtaaaag gagggacgac gagcggtccc tgttgagtct cgtgtgtggc aataaatcac       120
     gtattattct taaggctgtt gtatttaatt aagttacaca aca                         163
//
ID   Gypsy-5_MSe-I repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4368
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 883-883 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4368 BP; 1299 A; 842 C; 1129 G; 1098 T; 0 other;
     gtggcgacga ggattaaaat aattataata ataattagta gacaattata tcttgtgcgc        60
     aaatagtgtc aatagtacta tttaaacgat gtcgatcggt aaagtacggg agtttgacgt       120
     gcggtcaggg gtatggagtt cttatataga cagattgaac atgtatttta aagtcaacaa       180
     agtaacggac gatttgaaat taccaacttt gattgctacg atgggagacg aggcgtatga       240
     actactcgta aatctcgcca gtccgagtaa gccgtctgaa ttacaatacg cccatgtatg       300
     cgaactgtta cgtcagcatt tacagccgac gccatcttcg ttggcggaaa gataccgatt       360
     ccgacaaaaa cgtcaaggat cgggagaaga catagccact tttgttgcgg aattaaagaa       420
     actatcgcgg gattgcaaat ttaaagaaaa attgaatgaa aatttgcgcg atcaattcat       480
     atgtggtctt aatagtgacg tcattcggca aaggcttttt gcggaagagg atacaataac       540
     attcgctgag gcggttaaat tagcacaatc cttggaggcg gcggaacggg atgcagcaat       600
     cgtggagtca accaatgggg cagaggcgat gcatgcgatg aaacaaaaca cgagcagtaa       660
     aggttgggcg cgcagaggag gatcatacag tacaccaagc atgcggacca gagctgcggg       720
     ggaacgcgcc ggcagcgcag gagcaggtgc gttagcagca gagccgagta cgtcggttcg       780
     tcagtacgga gagccgaggg cgtctgttcg acagtacgga gagccgaggg cgtctgttcg       840
     ccagtacgga gagccgaggg cgtctgttcg tcagtacggg aaatgtacgg catgcggaag       900
     gacgtcccat tccttcaccg tttgtcgatt ccggaacttc acttgcagca agtgccaccg       960
     agttggtcat ttgcgacggg tgtgtcccgc ggaaaatgcg gattcggccc aaatgtcgca      1020
     ggagtgcacc tactttggag gagcggaagc tggagagttt tcggacaacg aatatgacgt      1080
     cattcacaac agtagcagag aggaggatgg aaacatcgag gagcaattaa atctcttagc      1140
     gttaaataat tataaggcag taagtttacc aatatgtatt gaaggtacta aagttaatat      1200
     ggaaattgac acaggtaccg ccatatcatg cataagtaaa aagacgtatg acagactttt      1260
     cactcattta cccatcgaga atgataatac aatattaaga ttttatgacg gttctaaaat      1320
     taagcctttg ggcgttataa caccagatgt aaattttaat aatgtcaata agcggctcga      1380
     attatttatt attgacggtg gcatgacgtc gttattaggt agacaatggt tagcagaatt      1440
     acagataagc attcctctgt ttagttgtaa tcggatacag ggaaatagta atattcatgt      1500
     taataaagaa atatgttgca ttctcgacag atataaagaa gtatttagtg acgggctggg      1560
     acggtacacg ggcggaaggg cgacgttgcg ggtgcgagag ggggcggcgc cgatatatca      1620
     tcgtgcgcgg ccgctgccgt atgcactgcg cgagcgcgtc gacgcggagt tggaccgtat      1680
     gctacgcgac ggcgtcatcg agcccatcga atgctccgac tgggcctctc ctctggtgcc      1740
     tgtttttaag gctgacggta cattgaggat ttgtgctgat tacaaagcga ccctgaaccc      1800
     ggttttgctg atcgatcgtt accctctacc aaggattgag gacgttttag taggtttaaa      1860
     cgggtcgcaa ttctatagta aaatagattt atcacatgca tataatcaag tagaactaga      1920
     tgagtctcga aaatataccg taattaatac tcaccgagga ttattctgct acaataggct      1980
     agttttcggg ttggcatcaa gcgtaggagt gttccaacgt attatgacta atttgttgca      2040
     aggtataccg aatgtacagg tattcttgga cgacgttatt attggtggga aaacacggag      2100
     cgagcattta gctgccctcg aagaagtttt caagcgctta tgcagccacg ggttaaaatt      2160
     caggaagaat aaatgtgttt tccttgcaca agaggttacg tatttaggat ttgtcgtatc      2220
     aaaggatggt attaaggccg atagttcaaa gatcgatgct atattaaagc taaatcgacc      2280
     acaaaatgtt agtgaactcc gatcattttt gggaatggtt aatttctatg ctaaattcat      2340
     taggaatttt agttcattgt taactccatt gcatagatta ttaaaaaagg gtatagtatg      2400
     gcactgggat attgaaagcg aacaagcttt caacggaata aaaaggaaat tgaccggggc      2460
     ggaagtatta gcacattatg atcccgataa acccttgatc gtaacgtgtg acgcaagccc      2520
     gcacggaatc gggggggttt tagcgcagcc aagcgctggc agcgagcggc cggtcgcata      2580
     cgcatcccgt acactgaccg cagctgaaaa gaattactcg cagatacatc gcgaggcttt      2640
     atccataatt tttacggtaa aaaagttcca ccagtactta tacggacgga agttcatatt      2700
     gcgtacagac cataaaccct tggtgtctat tttaggtcct agtaggggca taccaacgat      2760
     gaccgctagc cggatgcaac gttgggccgt aattctctcg gcatatgatt atgagataga      2820
     gtatatcaaa acttctgaaa attgcgcgga tggcctatca aggttaccgg aagtgaccaa      2880
     agatttccaa tgttacaagg acactattcc cgaacaaact tttttgcatt ttgcacaaga      2940
     ggcgctattg ttaaattaca aagaggtcaa aatacaaacg gcaaaggacg tcattttagc      3000
     taggatattg actttcattc gcgatggttg gcctgaagct tgcgagatca ccgctttgcg      3060
     accgtatttc aataggaaat ccgaattgta cgaagagcta ggatgtgtga tgtggggcat      3120
     agagtagtaa tacctgtagg ttgccgcgaa aaggtattaa aaataatcca tgagcctcac      3180
     atggggatag tcaagtcgaa agccttggct cgcagttacg tgtggtggcc cggtattgac      3240
     gaggcggtgg agcaagcttg tggcgcgtgt ggaacgtgcg ctgcgttctc ggatgcacct      3300
     ccacgcgcca caccgcatcc ctggccttgg ccgactcggc cgtggacaag agtgcacctg      3360
     gattatatgg gacctatagc agggaaatta tatttggttg ttgttgacgc tatgtctaaa      3420
     tggctagaag tatttagtgt accgagtacg gcggcgggta gcactattgc gaaactacat      3480
     gaattatgga gcaggttcgg tatccctaaa caaatagtaa cagataacgg gcctccattt      3540
     actagtggtg agttcgcaaa ttttgttagg cggaatggta cggagcacat atttacagct      3600
     ccgtatcatc cttcatctaa cggggcggca gaaaatgcag tgagaacctt aaagaaagta      3660
     ataaaaaagg cggttttaga acgtaaaaat gtggatcgga ccttaaatac attcttatta      3720
     cattatcgaa acatcgaaca ttctaccaca aaagaaagtc cagcggtatt attaatgaat      3780
     agaaggttgc gaactccgtt agatattatt aagccagacc gagaaaataa tgtgcatcga      3840
     gcgcaacaac gtcaaactaa cgacgctcgg ggtgaaaata gaagtttaaa agttggggag      3900
     agaatctggt accggcagca ttcgatgacg gagaagtggg ctcctggtac tgtggctaag      3960
     gctacgggtg taagggactt caaggtctta gacaagaata gtaaagtaat acatagacac      4020
     atcgatcagc ttaagccgag gtgtgggtcg cttgttatcc ccacgagttc tagggagtcc      4080
     agacctaata taatgggttc aagtcgtgag aatgaggcga ccccagttca agaacgttca      4140
     cttgtaacgg gttctccaat atcgccatct atagggcggc agctcggcgt aggcatatca      4200
     tcgccgaaca tttcgagtgc aaatgaacat caaacacaag atgaaaagtt tagtacgccg      4260
     cccactacgc ctgtactatc ccagtcacga ccattgcgga aatgtagatt agagaaaatt      4320
     gttagttata aggagtagac cgttaagatt aaattaagtc gggagaga                   4368
//
ID   Gypsy-5_MSe-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-137
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 874-874 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 137 BP; 43 A; 22 C; 32 G; 40 T; 0 other;
     tgtagtgtat gcaaactatg cggagtatta tggcactatg ggctgaggtt gtaagaatga        60
     cattggatac gtcagtggaa aataaaccat gctaacaact attagctgtg tttctttacg       120
     ctccaaagga cattaca                                                      137
//
ID   Gypsy-5_OrIn-I repbase;    DNA;    INV; 5526 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-5526
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1546-1546 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           519..2156
FT                 /product="Gypsy-5_OrIn-I_1p"
FT                 /translation="MPAMLCSECNVEADLQEFGVCSTCKEQVHLPCSQITV
FT                 ENYKKLTKERKEKWQGPCCSDKASMQILRRSLKSLELSTRESFTSFTTKLG
FT                 NFEKYMVGMRDDLTKVDKKVIHVNDVLTKKIDSVKKEIEENVSTLKAKIES
FT                 SISCVNEEINVRIQSINDNLTARIDAVSEMGPLASTERRAENDVKPLDFSG
FT                 NQEGLGGFSFRIESDIDAASSTDSSDDRSRGPHRPSNSEHMSKRIIRQIEK
FT                 IPVFKPYQPNSIVYFLMKIAPIAYRYSKKIKTILRIVAENTIDQSSAEYIY
FT                 TALKHEGLNFDVFAEALVSQAMTPRQLAQAKSKFLFAPQKATLPLRPFVDS
FT                 QLLLARLFGEKNDRHIVASILGAIHPNYLLLMGSTDNIFTINQLRQKVKGA
FT                 EISLNERYGEEYETNVAQRFFQDKSSENFKFHSSNGYKNNNSNSYHNKNSS
FT                 RYTQPKRQYKNTQWVNTHRENNVEDSQYGRQKNNQFQKGKNQGYAKTKNVP
FT                 FKKEQHSLAALAENIELVMKLRDLVAPPKEKEPSAQPQPETKSKKSKAKN"
FT   CDS           2065..5343
FT                 /product="Gypsy-5_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SCETWSLLQRRKNHLLSPNQKQNQKNQKQKTRYPPNP
FT                 SPSTLGSLPFIQVTICNRATPALLDSGSTVNALSQQFLDLVGSRSLKSFTP
FT                 VNNKTVVSVAGETVQFTGRGDLKLKLKNLTWTLPFFVMPKMPVPVILGFNF
FT                 MKMAEINLNSGDGLITFANNPLKDYRLLSESDDESSKNASLMARLESEDPN
FT                 HLSERTELILSNTKFPSVEFEPSSVKNHFINSYPDVLNEHIGKAKDFQLTI
FT                 HVKRVPPINQAAYPLNPLDLQAMREIIDDLLQEGVIEASHSPWASPAFLVS
FT                 KKGTSKKRLVVNFKKLNEVILFSAWPLPHIDHVFQHIIGAKFFTILDLSQS
FT                 FFQLPLDPDSKKYTAFKTPFGHFQYRRVPMGISLGSQAITEYLEKILAPVK
FT                 YKFVWNYIDDIIIYSPTESEHMTHISQVLTILRQSGLTVHPDKTRFLCTSV
FT                 TYLGHLLSHNSITIDSQRIEAISKIAPPRSLKETLSFLGACAFFAKFIPNY
FT                 SEISAPLHNLKTKGADLVWTFECQVAFDTLKSSLMNPPVLATPDFNVPFLL
FT                 YTDASSYAVGSLLAQKDSKGLIQPVAFYSKKLGKSEKNYSTYKKELFSVIL
FT                 SLRHFKHFLAHKPFHLYTDCSGLAAFLKGDRSRVSSNPAIRWITELDSFSF
FT                 DIHHVKGKCNTVADYLSRFADHSEVAQINEEENDIIFFTSPLKNIPSLFAD
FT                 FGNIQRSDQGISDRLKANDPSLQVIRGLVYLSQPGNLSAKKLLVPESMKDA
FT                 LFQYYHVGSYGAHLGRQKTIARLKALFTYKGMRKDVANKVASCHICSRIKP
FT                 NSHPYPHILQSTPPSRIFERLYVDFVGPLPTSTNGNKFIFIAVDGFSKFLF
FT                 AIPCRNTTAEIVKRILKNYIFAQHGMPSHIITDRQSCFRSAAFKNFCFDLG
FT                 ITYIANIVHYPQANLAERYIQGVKKSIRAFHSDSHRNWEDNMFLFISALNS
FT                 SVHESTKHAPARVFLGRETQHPLILKLNLEDSLLATSGEGLETILKDTYKN
FT                 LLKSNNLRRKEFAKDSMRDQLPKVGDLVFRKTYILSNKAKKIQSSLANKFS
FT                 GPYKILKIFNQVSYLIQSIDDPTITIQAHISQLKRS"
XX
SQ   Sequence 5526 BP; 1728 A; 1215 C; 1027 G; 1556 T; 0 other;
     aaaagtggta gcagagcgtg gttactgcgg acggttctga gagtgtttaa aatttttttt        60
     tattgagtaa tatcgtgaga aatgtgctct gaattttaat ttttttttta gaagagagtt       120
     ttttattttt ttttattttt tcatttagtc gaaggagtat tattttttat taaattttca       180
     ggtttgaata atttcttaaa tttcttaaat aaaaaaaatt aggtcatcta tttttagccg       240
     gacaactccg gacagttcaa actctaggat tagtcacttt cttatctcac tgcctacgtt       300
     cggaaataat tcttcgttca aaaaaatttt ttattcatta aattataaat aattttcttc       360
     cctttccttt tatttttatt atctccatca aattcttttt ttttgggttg atttaagact       420
     tcactatttt aaatagacaa ttcagtttcg atcccctcgc cttgaatttg tcggcttaaa       480
     gtcccctttg caattttcca gcttctgagt ctcgcgccat gcctgcaatg ctctgtagcg       540
     aatgtaatgt ggaggctgat ctccaggaat ttggggtttg ttccacttgc aaagagcagg       600
     ttcatttgcc ttgcagtcaa attacagtgg aaaattacaa aaaactaaca aaggaacgga       660
     aagaaaagtg gcaagggcca tgttgttccg acaaggcatc gatgcaaata ttgaggaggt       720
     cgttaaagtc cctggagttg tcaacccgag agagtttcac ctcttttacc actaaattag       780
     gcaattttga gaaatacatg gtaggaatga gggatgacct taccaaggta gataagaaag       840
     tgatccacgt aaacgatgta ctaaccaaaa aaattgattc ggtaaaaaaa gaaattgagg       900
     aaaatgtctc gacactaaag gcgaagatag aatcctcaat ttcgtgcgtt aatgaggaaa       960
     ttaatgtacg aattcagtcg ataaatgaca atttgaccgc taggattgat gccgtgtccg      1020
     aaatgggtcc ccttgcttcg acagaaagaa gggctgagaa tgatgttaag ccattagatt      1080
     tttctgggaa tcaagaaggt ctaggtggat tttcgttccg tatcgaatca gatatagacg      1140
     cagcgtcttc tacggattct tcggacgacc ggtcaagagg acctcatcgt ccctcgaaca      1200
     gtgaacatat gtccaaaaga ataattagac aaattgaaaa aattccagtt tttaagccat      1260
     atcaaccaaa ttcaatagtg tatttcctca tgaagatagc cccaatcgca tatcgatatt      1320
     ccaagaaaat aaaaaccata ttgcgtatag tggctgaaaa caccatagat cagtcgagtg      1380
     ccgagtatat atataccgct ctcaagcacg aaggtctgaa ttttgatgtt ttcgctgagg      1440
     ctctagtgtc acaagcaatg accccccgtc agctcgctca ggcaaagtct aaattccttt      1500
     ttgctcctca aaaggcaacc ctaccccttc gcccatttgt agactcccag cttttgctag      1560
     ctaggctatt cggcgagaaa aacgatcgcc acatagtggc atcgatttta ggagctattc      1620
     accccaacta ccttttatta atgggctcaa ctgataatat tttcacgata aatcagctga      1680
     ggcaaaaggt aaagggagcg gaaattagct tgaatgaaag atacggggaa gagtatgaaa      1740
     ccaatgtcgc tcaaagattt tttcaagaca aaagctcgga aaattttaaa ttccatagca      1800
     gtaatggcta taaaaataat aatagtaata gttaccataa caaaaattcc tcccggtaca      1860
     cccaaccgaa acgtcaatac aaaaataccc aatgggttaa tacccataga gaaaacaatg      1920
     tagaagacag ccaatatggc cgtcaaaaaa acaaccaatt ccaaaaagga aaaaaccagg      1980
     gatatgcaaa gacaaaaaac gtccccttta aaaaggaaca gcattctctg gcagccctag      2040
     cagaaaacat agaactggtt atgaagctgc gagacttggt cgctcctcca aaggagaaag      2100
     aaccatctgc tcagccccaa ccagaaacaa aatcaaaaaa atcaaaagca aaaaactaga      2160
     tatcccccca acccttcccc ctcgacctta ggctctctgc cctttatcca agtaaccatc      2220
     tgcaatcgtg cgactccagc ccttctcgac tcgggcagta ctgtcaacgc attgtcgcag      2280
     caatttctag acttggtggg cagcagatct ttgaagtcat tcactccggt aaacaacaag      2340
     acagttgttt cagtagcggg ggagactgta cagttcacgg ggagggggga tttaaaattg      2400
     aaattaaaaa atcttacttg gacattacca ttttttgtca tgccaaagat gccggtgcct      2460
     gtcatcctcg gctttaattt tatgaaaatg gcagaaataa atttaaattc aggcgatggg      2520
     ttaatcacct tcgccaataa ccctttaaag gactatagac tactttcaga gtccgatgac      2580
     gaatcatcaa aaaacgctag cttaatggct cgcttagaat ctgaggaccc aaatcacttg      2640
     tcggagagga cagaactaat cctctcaaat accaaatttc cttctgtcga atttgagccg      2700
     tcatccgtaa aaaatcactt tataaattca tatcctgacg tgcttaatga acacatcggc      2760
     aaagcgaagg atttccaatt gacaattcat gtcaaaaggg tgcctccgat aaatcaggcg      2820
     gcatacccgc taaacccgct agacctgcag gcaatgcgag aaataatcga tgatttgctg      2880
     caggaaggag ttatagaagc gagtcattct ccttgggctt caccagcctt cctagtgtcc      2940
     aagaagggca catcaaaaaa acggctcgtg gtcaatttta aaaaactaaa cgaggtcatc      3000
     ttgttctcgg catggccgct tccccacata gatcacgttt tccaacatat aatcggggca      3060
     aaatttttca caattctcga cttatcccag tctttttttc aattgcccct ggatcccgat      3120
     tcaaaaaagt atacagcctt taaaacgcca ttcggtcatt tccaataccg tagagtccca      3180
     atggggataa gccttggttc ccaagcaata acggagtact tagaaaagat actcgcccct      3240
     gtgaaatata aattcgtctg gaattatatc gacgacatta ttatttattc gcccacagag      3300
     tcggagcata tgacccacat atcgcaggta ttaactattt tacgtcaatc aggtctaact      3360
     gtacatcccg acaagactag atttctatgt acatcggtta catatctggg acatcttctt      3420
     tctcataaca gcatcacaat agactcccag cgtatagaag ccatctcaaa aatagctcca      3480
     ccaaggtcat tgaaggaaac cttgtctttt ttaggggcat gcgccttttt tgcgaaattt      3540
     attccgaatt attcggaaat ttcagctccc ttacacaatt tgaagacaaa aggtgccgat      3600
     ctagtctgga cgttcgaatg tcaggtggca ttcgacacac tgaagagctc cttaatgaac      3660
     ccaccagttc tggccactcc agatttcaat gtacccttcc ttttatacac cgatgcttcg      3720
     agctatgcgg tgggaagctt acttgcccaa aaagactcaa agggcttaat tcagccggta      3780
     gccttttatt cgaaaaaact cggtaaatct gaaaaaaact actctacata caaaaaagag      3840
     ctcttctctg tgattttaag tcttaggcat tttaaacatt ttcttgctca caagccattt      3900
     cacctatata cagactgcag cgggttagct gcatttctga aaggagatcg atccagagtc      3960
     tccagtaatc ccgctatccg atggattaca gagctcgatt cgtttagctt cgacatccac      4020
     cacgtgaaag gaaagtgcaa cacggtagct gattaccttt caaggttcgc tgaccattcc      4080
     gaggtggccc aaatcaatga agaggaaaac gacatcattt tttttacctc accattaaaa      4140
     aacatcccct cccttttcgc agatttcgga aatattcaaa gatctgatca gggaatttct      4200
     gatagactta aggcaaacga cccttcgctg caagttatta ggggattagt atacctttct      4260
     cagccaggca atctttcagc aaaaaagctc ctagtgccgg agagcatgaa agatgcgctg      4320
     ttccagtact atcatgttgg ctcttatggg gctcatttag gtcgtcaaaa gactatcgca      4380
     cgtcttaagg ctcttttcac ctacaaaggt atgagaaagg acgtggcgaa caaagtcgcc      4440
     tcttgtcaca tttgctctcg gatcaaacca aactctcatc cttatcctca tatattacag      4500
     agcacaccac cttcccgaat tttcgaaagg ttgtacgtgg attttgtcgg tccactaccg      4560
     acgtcaacaa atggtaataa attcatcttt atcgcagtgg acggattttc aaagttcctc      4620
     ttcgcaatcc catgccgcaa caccacggcg gagattgtga agaggatcct aaaaaattac      4680
     atatttgcac aacacggtat gccatcccat atcatcaccg atcggcagtc atgttttaga      4740
     tcggctgcat ttaaaaattt ttgtttcgac cttggtataa cttatatcgc aaatatcgtc      4800
     cattatccgc aggcaaacct tgcggaacga tacatacagg gtgtcaaaaa gtcaatcagg      4860
     gcgttccaca gcgattccca caggaactgg gaggacaaca tgtttctatt tatatcagcc      4920
     ctcaattcaa gtgtgcatga gtccacaaag catgcgcctg ctagagtatt cctggggcgc      4980
     gagactcagc accccttgat cctcaagctc aacctggagg attcactctt agccacgagt      5040
     ggcgagggcc tcgaaacgat cctgaaggat acctataaaa acctgctaaa gtccaacaat      5100
     ctcagaagaa aagaatttgc caaggactcg atgagggacc agctccctaa ggtcggagat      5160
     ttagtcttca gaaagaccta tattttatca aacaaagcca aaaaaattca atcgtcattg      5220
     gcaaataaat tctcagggcc atataaaatt ttaaaaatat ttaaccaagt ttcttactta      5280
     attcaatcaa tcgacgaccc taccataaca attcaggcac atatctctca attaaaacgt      5340
     tcatagtata accatctttt ccccatacat atataatata acattctaag gaatccttaa      5400
     caagattaca tgaagactca ccatttgtat ttatttaatc acaatggctc accataagta      5460
     catgattttt cctttttttt tttttttttt tttttttttt tccttttccc gaggagaggg      5520
     aatatt                                                                 5526
//
ID   Gypsy-5_OrIn-LTR repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-521
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1575-1575 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 521 BP; 175 A; 91 C; 96 G; 159 T; 0 other;
     tataacagat taatataatt ttaaagacaa attaattgaa gaaaaaggcg ggaccagtgc        60
     cgccatctag cggtttaagg aggaagctgg gtggtggtga agaaagaaga ggggaccgaa       120
     ggaagagaga gatctggaca ctcttcgacc gaccggcctg caggcatttg agagttttct       180
     tttcggcttt ttctttctgc tcaaaaaaag aaaaaaaaaa ataataatct atacaagcgt       240
     caaccgcctt catcaagcat cagttcatca gttgatcagt tcatcagttc atcagttctt       300
     ctgagctcca acaataatca cttaatttgt caatttattt tttaaagcga gtgagtctta       360
     tctttttttt atatttaatt tcaaagcttt ttttttacat ataaacttat aacagaataa       420
     agaggattct ttagggcaat caatatttaa ctttattatt ttaaataccc ccagaaccct       480
     ctgtcagcta agaagattct gaggagagaa gctacgccac a                           521
//
ID   Gypsy-5_OsLi-I repbase;    DNA;    INV; 4702 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-4702
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2015-2015 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..4092
FT                 /product="Gypsy-5_OsLi-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSETDATPSIEDIVREVMLKLASVVPSNNAPPPVIGN
FT                 NITVPNPLMEAIPEFGGSELGDDSNVWCSLVEEITKNVTSQQRLSLATHAL
FT                 TGPAKRWYREWKGKPRTWDKFREDLCSVFVSEKRLHQRMLRAVTYTSDGAV
FT                 SYAEYVRTKLMYFEQTRVNFKPDELIELVIGAITDESVRQAMMNGNHQTTA
FT                 SMIVGITQFGKTGCEKKTDKGVGERATKGPHASRKRCFVCDSDDHVQRHCP
FT                 KKAKSKPSGDDGPVRKIVTCSFCKKRGHEETRCWIKQRTANTSREQKNAQA
FT                 NVCQTTNMKLTPILLRNTLLNCLMDSGANCSLMRESVAKRTGCNVTPFVTV
FT                 VRGLGNKSVSTIAKTTAVVQCEDVSLELDIFILPDADVPYEVVIGRNVLRH
FT                 PDLKMVTDVDGTKLQRMPAFTESEQYPAGEQCCTIDDIGNDMDGSLRELLG
FT                 RYQHMIARGNHIRSVTTGEMRIVIQENKVINYRPYRLSFAEREKVREIITD
FT                 LMENNIIRESTSPYASPILLVKKKNGKDRMCIDYRALNKITVKDRYPLPLI
FT                 EDQLDRLGRGKLFTTLDMASGFYQIPVAADSIDKTAFITPDGHFEFLRMPF
FT                 GLANAPAVFQRAINNALGNLKNNIAIVYIDDILIPSETMEEGLRYLDLVLH
FT                 ALSEAGFSLNMEKCKFFKKNIEYLGREISADGVQPSKEKVRALVDSPTPTN
FT                 VRQVRQFMGLASYFRKFIPEFAVRTACISKLTKNGQPWCWGLEQENARHFI
FT                 IETLTAQPLLTIFDPKQETELHTDASAIGYGAILFQRINGDLRVIAYFSRR
FT                 TTPAESRYHSYELETLAIVNALKYFRVYLLGINFKIVTDCNAVKATRDKKD
FT                 LLPRVARWWVYLQDYSFDLEYRKGKCIEHVDYLSRNPPKDYRVNVICEGSW
FT                 LEIAQGNDEETKSLIQRVSAGESVSSDFEVRNGILCRKILRDSGRTVFRSY
FT                 VPKGSRIGLLRLYHDENCHVGYDKTFDRVAQRYWFPRMRNFVKKYIDHCIT
FT                 CTVAKRQSGPRQGFLRSIEKKAIPFDTVHCDCVGPFETSKDGYKHILIIVD
FT                 AFTKYVQLVPLKTLNGPETLQVFRDRLTLFGTPRVLILDRGTNFTYKPLVK
FT                 FVENNGVQLHFIATGAPRANGQAERYVSTITNLLTVEISKNTDWPSVISKI
FT                 QLSLNTTVQKSTGFSPSRLLFGMERSAGNAVLAERELPDNNERIDILRDRE
FT                 LASARLEKNAETQNIAANSRRRNNINYAVGDTVFVRPSDTRRAKLEMKYVG
FT                 PYKIVRILTNDRFEIVGTSGRPQVAPKDRLRPWKGEWSGDDNDNDEDSRSA
FT                 DEPC"
XX
SQ   Sequence 4702 BP; 1388 A; 868 C; 1211 G; 1235 T; 0 other;
     tcagaagtgg gattcaaact tagtcacttt aaagggaata ttgaagtatt cgataagtac        60
     gcgtgtacga gcgtgttttg gtatatctgc taaaatatca ctaacatttt gtttgcttcg       120
     cgcacgcgaa tatcgtaaaa caacatgagt gaaacggacg cgacaccttc tattgaggat       180
     atagtgcgtg aagtgatgtt gaaacttgct agtgttgtac cgtcaaacaa tgctccgccg       240
     cctgtaattg gcaataatat aacagtgcca aatccattga tggaagcaat acccgagttt       300
     ggtggtagcg agttgggtga tgattcaaat gtgtggtgta gtttggtgga ggaaattacg       360
     aagaacgtta cgagccagca acgtttatcc ttggcgacgc atgcactcac agggcccgcg       420
     aaaagatggt accgagagtg gaaaggaaag ccgcgtacgt gggacaagtt tcgcgaggat       480
     ctgtgctcag tatttgtgtc cgaaaaaaga ctgcatcagc gaatgcttcg tgcggttacg       540
     tacacgagtg acggagccgt ttcatacgct gaatatgtcc gtacgaaatt aatgtatttc       600
     gaacagacgc gtgtgaattt taaacctgat gaactaatag aactcgttat tggtgcgatc       660
     acggatgaaa gtgtcagaca ggcaatgatg aatggtaacc atcagactac cgcgtccatg       720
     atcgtcggaa ttacgcaatt tgggaaaaca ggttgtgaaa agaaaactga caaaggagtt       780
     ggagaacgtg caaccaaggg gccacatgct tcaaggaaaa gatgttttgt atgcgacagt       840
     gatgaccacg tgcagcgaca ttgtccgaaa aaggctaaat ctaaaccaag cggggatgat       900
     ggcccagtga gaaagatagt aacctgcagt ttttgtaaga agagaggcca cgaggagacg       960
     cgttgttgga tcaaacaaag aactgcaaac accagtcggg agcagaaaaa cgctcaagca      1020
     aatgtctgcc agacaacaaa catgaagttg acaccgatcc ttctgcggaa tacgttactt      1080
     aattgcctta tggacagtgg tgcgaattgt tccttgatga gggaaagtgt tgcgaaacgt      1140
     acgggttgca atgtgacacc ttttgttacg gtggtgcgag ggctgggcaa taagagtgtt      1200
     tctacgattg ccaaaactac agcggtagtg caatgtgagg acgtctccct ggaactggac      1260
     atttttattt tgccagacgc ggacgttcca tatgaggttg tcattggaag aaatgtactg      1320
     cgacatccag atttgaagat ggtgaccgac gttgacggta ctaaactcca gcgcatgcca      1380
     gcattcacgg aatcagagca atatccggca ggagagcaat gctgcacaat tgacgacatt      1440
     gggaacgaca tggatgggtc gctgcgtgaa cttttgggca gataccaaca catgatcgcg      1500
     aggggtaatc acatacgcag tgtcaccacc ggtgagatgc gaattgtaat tcaagaaaat      1560
     aaggtaataa attatcgtcc ctatcgtttg tcgtttgctg agcgagagaa agttcgcgag      1620
     ataattaccg atttaatgga aaataatata atacgcgaaa gcacttcgcc ttatgcgagc      1680
     ccgatccttt tggttaaaaa gaaaaacggg aaggatagaa tgtgcattga ctatcgcgct      1740
     ctaaataaaa tcacggtaaa ggaccgctat ccgttgcctc taatagagga tcaactcgat      1800
     cgtctcggaa ggggaaaatt atttaccacc ttggacatgg cgtctgggtt ttatcagata      1860
     ccggttgcag ccgattctat tgacaaaaca gcttttataa ctccagacgg tcattttgag      1920
     tttctccgta tgccttttgg gttagctaac gcaccagcgg ttttccagcg ggcaataaat      1980
     aacgcacttg gaaatttgaa aaataatatt gctatcgttt acatcgacga catacttata      2040
     ccgtccgaga cgatggagga gggattaaga tatttagatc tagtattgca tgccctctcg      2100
     gaggccggat tttctctcaa tatggagaaa tgtaaattct ttaaaaaaaa tatcgagtat      2160
     ttggggagag agatatctgc tgatggtgta cagcctagta aggaaaaggt cagggctctt      2220
     gttgattcac cgacgccgac aaatgtaaga caggtaaggc aatttatggg attagccagt      2280
     tactttcgga agtttatccc cgaatttgcc gtgcggacag cgtgcatctc taaacttacg      2340
     aaaaacggtc aaccctggtg ttgggggttg gagcaagaaa atgcacgaca ttttattatc      2400
     gagactctca ccgcgcaacc tttgctcacg atatttgacc caaagcaaga aactgagctg      2460
     cacacggatg cgagtgcaat tgggtacggt gctattcttt ttcaaaggat aaatggggat      2520
     ttacgggtca ttgcttattt tagtcggcgt actacaccag cggaatctcg gtatcactca      2580
     tacgagttag agacgctcgc gatagtaaac gcgttgaagt attttagagt atatctatta      2640
     ggcatcaatt ttaaaattgt gacagactgt aacgctgtga aagcgactcg ggataaaaag      2700
     gacttgttac cacgtgttgc ccgttggtgg gtttacttac aggattattc atttgactta      2760
     gaatatcgga aagggaaatg cattgaacat gttgattacc tgagtcgaaa cccgccgaaa      2820
     gattatcgag taaatgtaat atgtgagggt tcgtggctag aaattgctca agggaatgac      2880
     gaggaaacaa aatccttaat ccagagagtt tccgcgggag aatccgtttc cagtgacttt      2940
     gaagtgcgga atggtatttt atgcagaaag atattaagag atagtggtcg gacggtattt      3000
     cgcagctacg tacctaaggg tagtagaatt ggattgttgc gtctttatca cgacgaaaat      3060
     tgtcacgttg gctatgacaa aacgtttgac cgggttgcac agagatattg gtttccccga      3120
     atgcgtaatt tcgtgaaaaa atatattgac cattgtatta cttgcaccgt tgctaaacgt      3180
     cagtcaggac ctagacaagg atttttgcga tctattgaaa agaaagcaat ccctttcgac      3240
     acagtacatt gcgattgtgt tgggccgttt gaaacatcga aggacggtta caaacatata      3300
     ttgattattg tagatgcgtt taccaaatac gtacaacttg ttccgctgaa aacactaaac      3360
     ggtccagaaa cccttcaggt ttttcgagat cgattaactt tattcggtac tccgcgagta      3420
     ttaatccttg atcgcggaac aaatttcacc tacaaacctc tagtgaagtt cgttgagaat      3480
     aacggtgttc agttacattt tattgccacg ggagcccctc gggctaatgg tcaggctgaa      3540
     cgatacgttt ctacgatcac taaccttctt acagtcgaaa tctcaaagaa tacagattgg      3600
     ccgagcgtga tatcaaaaat tcaactttcg cttaatacga ctgtgcaaaa gtctacaggg      3660
     ttctcaccaa gccggttact gtttgggatg gaaagaagcg cgggtaacgc ggtacttgct      3720
     gaaagggaat tgcctgataa taatgagcgc attgacattc taagagatag agaacttgca      3780
     tctgcacgcc ttgagaagaa tgccgaaacg caaaatatag cagcgaatag cagacgtaga      3840
     aacaatatta attacgcggt gggggatact gtttttgtgc gaccaagcga tacacgtaga      3900
     gcgaaactag agatgaaata tgtcggacct tataaaattg tacgaatttt gacgaatgat      3960
     cgatttgaaa tcgttggcac cagtggtagg ccgcaggtgg cgccgaaaga ccgactgcgt      4020
     ccctggaagg gtgaatggtc tggtgatgac aatgataatg atgaggatag tagaagtgcg      4080
     gatgaaccgt gttagcggtc aactatataa atagtttaat ttgtttgtac agtggtaaaa      4140
     taaaatacgt aaagctgtag acatttattg tatgtttatt tggttgggag atacgccctg      4200
     tttaaacatt ccttgagata ctttaggtgc agttgctacg agaacacgta acatcgggtg      4260
     ttcgactatt tggtgtatta aaactgaggc tgttgggtga cacttacagg tgtagtcatc      4320
     gtggagataa cggatggaag acgtcaatgt cgtgtacgga atatagtaac gctatgagtt      4380
     cgacaaagtc tatatcatgg gtgacataag gccacggact tgatatagtg cgaagcacgg      4440
     cgtttgaagg gtacacgaat tgtacggaac gtaggacgtt atgaccttat tggaacactt      4500
     gcggtagaaa cgtttggcgg tagcagcggc agggcacgaa cgaggtgcgg agctgggagc      4560
     tatgcggcct ggagacgttg ttttgagcaa gtttgggtgc ctgattgagg tgcatagata      4620
     atccagggta ctattagtgt actctgtgga ggaattcttg aattgtagct tcccgagagc      4680
     gtgaagcagg tcagtttggc cg                                               4702
//
ID   Gypsy-5_OsLi-LTR repbase;    DNA;    INV; 427 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-427
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2025-2025 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 427 BP; 100 A; 93 C; 133 G; 101 T; 0 other;
     tgttagcgtc agcacgcatg caagggtcga cacgtggcag agtcaatgca tttggggctt        60
     tgacctgctt ttcaaggact ctaaccgact tctcggggtt ctttgtaatg tcgatacccc       120
     gagccatatg tctgtcatcg gacttgggcc ggcggtagtt gattggggtg cgacgaattt       180
     taagagtcgc ggatgttttg tatatggaat ggcgatagag agttcgatcg ccgagcttca       240
     aagaaacgcg gatgtggccg atgacccaaa gtcatggtgc tgcgtggcgc gtgcagagag       300
     ataagaattc gaaataaagg atctcgccac ggagtgggga gggtccgggg accctctggc       360
     aagaggactg tgtcaaaaga cacggcactt acccgagaac ctcggatcga tcgtgatctt       420
     tctgaca                                                                 427
//
ID   Gypsy-5_PBa-I repbase;    DNA;    INV; 6644 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PBa_;
KW   Gypsy-5_PBa-LTR; Gypsy-5_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-6644
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 679-679 (2014).
XX
DR   [2] (Consensus)
XX
CC   Positions [4721-5200] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           545..5563
FT                 /product="Gypsy-5_PBa-I_1p"
FT                 /translation="MSDGEINRNRPLRNISWLHGERTQRARSPVTPVRVVQ
FT                 EAVRDIRDSVRRNLETRHSDESSPEPVLHPHIVIERVFPFNDVDESLIPEP
FT                 VDEHRLHPRTRRSEGNESQNSQRREFSLTSYDDSVFDPEEYYTAPRDLERR
FT                 NMAERQLRTPRGEETREPEVTRAEVDAEIERLRASAGPSRRRVEQSKPNND
FT                 KESILDVLLEGIRALQERMGRLEITVFDHNENRFAQVPNEQPRDEPLDITY
FT                 GRTLEDIRNRPETVAGYLRLKEARDMIPEFDGTSHKLPEFLSAASYAMKNT
FT                 NPMEEGTLLEAILCTKLKGRAMTDFQTRDIRDFAQLKRELEVCYLSKKSTT
FT                 HLQLEFNTLKQKNGESARAFGLRTDKLAMELYESMIEGRNNTIESKRAILE
FT                 TIQQQALCNFQLGLLDDIKLLVRSQHYTTLQDAIAGASAEEKFKGPMENFG
FT                 RAKANTVRTPARENKLPQCQRCGKIGHVGRDCRTSRYTNRFSLPRAEKPIG
FT                 VNAMEKYCVNCKKAGHDKKECWSKPNGSERKQVRRPRQEKEARGQVNTTVR
FT                 AKENETCKEDAELSFSSSEEEEEKSRKIRTTRAAREHQVAQITSKARVSAT
FT                 LDLVTLPIKEMKKGKMNFLLDTGATLTLVKVGNLKGNTPVREEQIALTGVT
FT                 GHKIHTLGKIRATIVLGNEEIRHTMYVVKDDFPVAYEGILGIDFLKKHRAK
FT                 CDHAKEILRIGSVNLKLHPHKKYILTPRSETIVQAITSQNQIGIVKPEETE
FT                 PGVFIGSCLVEPDDYICPISIINTTTETIEITTPSVTLDAVQLGDAAEMLT
FT                 LHESDGRTVQSRQECLQKLLRTEHLNHEEKKALTQICSDFCDIFHVENDPL
FT                 TYTTTIAHEINTRSDSAPVNVRPYRLPEKHKAEVNRQIEKMLDDGIIRHST
FT                 SQWNAPLLVVPKKVDASGKQKLRIVVDFRKLNDLTIGDSFPLPNITDILDQ
FT                 LGNAKYFSTLDLASGYHQIPMKEEHKNKTAFSTPYGHYEFNRMPFGLKNAP
FT                 ATFQRLMNSVLTGIQGLRCLVYLDDIVIYGATLNEHNKRLTEVMQRLRDHN
FT                 LKLQPDKCEFLRKEVTYLGHIITENGIQPDPRKLQAVEKFPTPKKVKDIQS
FT                 FLGLAGYYRKFIQDFSKIAKPLTKLTKKEEKFNWSIEQQYAFQTLKEKLIT
FT                 APILNYPDFTKEFLVTTDASDYAIGAILSQGRIGQDRPIAYASRVLNKAER
FT                 NYNTTEKELLAIVWGVKYFRPYLYGTKFKIITDHRPLVWLFSVTDPGSRLI
FT                 RWRLKLEEYDYEIIHKAGKGNTNADALSRNPITLDSQLNTVAHDEERNDDD
FT                 EREEEIKREYTAEEKRQILYEYHDAPTGGHQGVARTLNRIKLLHNWRGITR
FT                 DVEDYINKCELCQKNKLNQKTKLPMVITDTPKKPFEKCALDIVGPLPITNA
FT                 GNKYILTFQDNLTKFSKAIPIENQEANTVAKAFVTKIVAEHGIPEKILTDQ
FT                 GTNFMSEIFKNTCKLLKIEKIQTTAYHPESNGALERSHRTLAEYLRHYINE
FT                 NQTDWDEWLPYAMFAYNTTPHTATGFTPFELIYGHRAELPTALTKPPKITY
FT                 SYDDYVQELREKIRATNQVARECVKQEKIKSKQYYDRNARMKTFQIGEQVL
FT                 LYDETVRRGRSKKLEAQWIGPYIIIEKLSEVNYKIKMGRRTITVHANRMKA
FT                 FAEN"
XX
SQ   Sequence 6644 BP; 2487 A; 1374 C; 1434 G; 1349 T; 0 other;
     ttttggtggc agcggtggga ttgtcgacac tatccccacg attcatacaa tctgagagga        60
     taatcgctaa ccgagccagc agaaatcgag ggtaagccct agcagacaaa acgggcagaa       120
     agaaaaaaaa cttttctggc aactttcata agacctgcag tactagcccc aaggctgcag       180
     gcagaagaga aactttctcg aattacaaga cctgtggaaa acaggcggac ggaaaaggct       240
     ccgtcagaaa ataacaagcc tacaatcgaa agagtacgaa aagaatagct gagtgccgac       300
     ctaggacaac cctacagcta tcagcggcag cagagcagcg agccagcatc gcccaacacg       360
     tacatcgaca ccagtcgaca aggacacccg gtagagcagc cagcgagcgc atatcagcga       420
     caccggagaa ggcaccgacc tacgacaaca acacgcgaca acgaagcagc atgaagctag       480
     cagcgatact gtaagtgaaa aaatcgtatc gcagtaaaaa ttgtataagc aagcgatagc       540
     attgatgtcg gacggcgaaa taaatagaaa ccgacccctt agaaatatat cgtggttaca       600
     cggcgagcga acacaaagag cgcgaagtcc tgtcaccccc gtgcgtgtag tccaagaagc       660
     cgtacgcgat atccgcgata gcgtgcgtcg aaatttagaa acgcgacact cggatgagag       720
     ctcacctgag ccggtgctcc atccacacat agttatcgag cgagtatttc cgttcaacga       780
     cgtagacgag agcctaatac cggaaccagt ggacgaacac agactgcatc ccagaacgag       840
     acgttctgaa ggaaacgaga gccaaaattc acaacggaga gagttctcgc taacatctta       900
     cgacgatagc gttttcgatc cggaagaata ttacacggct ccgcgcgacc tcgagcgtag       960
     aaacatggcg gaacgacaat tacgtacacc tcgtggcgag gaaactaggg aaccagaggt      1020
     aacccgcgca gaagtagacg cggagataga acgtctcaga gcttcggcag gcccctcgcg      1080
     cagaagggta gagcaatcaa aaccgaacaa tgataaagaa tcaatattag acgtgttgct      1140
     agaaggaatt cgcgcgctac aagaacgaat gggtcgacta gaaattacgg ttttcgacca      1200
     taacgaaaac cgattcgcac aagtgcctaa tgaacaaccc cgtgacgaac cgttagacat      1260
     aacttacgga cgaacactcg aagatatacg aaaccgaccc gagaccgtag cgggatatct      1320
     acgattaaaa gaagctcgcg atatgattcc ggaattcgat ggaacctctc ataagctgcc      1380
     ggaattcttg agtgccgcat catacgctat gaaaaatacg aatccgatgg aagaaggaac      1440
     gctactagaa gcgatactat gcactaaact aaaaggcaga gctatgactg attttcaaac      1500
     gcgagatata cgcgactttg ctcagttgaa aagagagcta gaagtttgct atcttagcaa      1560
     gaaaagtacc acacacttgc aactagagtt caatacgcta aagcaaaaaa acggagaatc      1620
     ggcaagagcg ttcggattgc gtacggacaa actagctatg gagctatacg agtccatgat      1680
     agaaggtcga aataacacaa tagaaagtaa acgagcgatc ttggaaacca tacagcagca      1740
     ggctctatgc aattttcagc tcggattact ggacgatata aagctattgg tacgatcaca      1800
     acattataca acgctgcaag acgccatcgc tggcgcgagc gcggaagaga aatttaaagg      1860
     accaatggaa aattttgggc gtgcaaaagc gaatacagta cgcacacccg cccgcgaaaa      1920
     taaattaccg caatgccaaa gatgcggaaa aatcggacat gtcggacgag attgtcgaac      1980
     tagtagatac acgaaccgat tttctttacc cagagccgaa aaacccatcg gcgtaaacgc      2040
     gatggaaaaa tattgcgtaa attgtaaaaa ggcgggacac gataaaaaag aatgctggtc      2100
     aaaacccaat ggatcagaga gaaaacaagt aagacgaccg agacaagaga aagaagcaag      2160
     aggacaagta aatactacgg taagagcaaa agaaaacgaa acgtgcaaag aagacgcaga      2220
     attgtcattc agtagtagcg aagaagaaga ggagaaaagc agaaagataa ggacaacgcg      2280
     agccgcgcga gagcatcaag tagctcagat aaccagcaag gcacgagtca gcgctactct      2340
     agatctggta accttgccaa taaaggaaat gaaaaaagga aaaatgaatt tcttattgga      2400
     tacgggtgct accctaacac ttgttaaagt gggaaattta aaagggaata cgccagtacg      2460
     agaggaacaa atagctctca ccggcgtaac aggacacaag attcacactc tcggtaagat      2520
     tcgagctacg atcgtcctcg gaaatgagga aataagacac accatgtatg tggtaaaaga      2580
     tgacttcccg gtcgcttacg aaggaattct cggcatagat ttcttaaaga aacaccgagc      2640
     aaaatgcgat catgcaaagg aaatattgcg aataggcagc gtaaatctaa aattgcatcc      2700
     tcacaagaaa tatattctaa cgcctcgcag tgaaaccatt gtgcaagcta ttactagtca      2760
     aaatcagatt ggaatagtga aacctgaaga aacggaacca ggagtattta ttggtagttg      2820
     cctggtagaa cccgatgatt atatctgccc aataagtata attaatacaa ctaccgaaac      2880
     tattgaaatt acgacgccga gtgtaacgtt agacgccgtg cagctgggtg acgccgcgga      2940
     gatgctcacg ttacacgaga gcgacggccg tactgtacag tcacggcagg aatgcttaca      3000
     aaaattgcta cgaacagaac atctaaatca cgaggaaaag aaggcattaa cgcagatatg      3060
     ctctgacttc tgcgacatat ttcacgtaga gaacgatcca ctgacttaca ctacgacaat      3120
     agcacatgaa ataaatacac gtagcgatag cgcgcctgta aatgtgcgac cttatagatt      3180
     gccggagaaa cataaagcag aagtaaatcg gcagattgaa aagatgttag atgacggaat      3240
     aatacgtcac agtacgagtc aatggaatgc gccattgcta gtagtaccca aaaaggtgga      3300
     tgcatctggg aaacaaaaac tacgcatcgt agtggatttt cgaaaattaa acgatctaac      3360
     aatcggagat tcttttccac taccaaatat aacagacatc ctagatcagc tgggaaatgc      3420
     aaagtatttt tcaacgttag acctcgcatc cggataccat caaattccta tgaaggaaga      3480
     acataaaaat aaaacggctt tttctacacc gtatggacac tatgaattta atagaatgcc      3540
     gttcggactt aaaaacgcgc ccgcgacatt ccaacggcta atgaactcgg tgttaaccgg      3600
     aattcaagga ctcagatgtc tagtttatct tgacgatata gtaatatacg gtgcgacatt      3660
     gaacgaacac aataaacgac taactgaagt aatgcaacga ctgagagacc ataatctcaa      3720
     gttgcagccg gataaatgcg agtttctcag aaaagaagtt acttatctag gacatattat      3780
     tacggaaaat gggatacaac ctgatccccg taaattgcaa gcggtagaga aatttccgac      3840
     accaaaaaag gtgaaagata tacagtcatt tttaggactg gccggatact atcgaaaatt      3900
     cattcaagac ttttcgaaaa ttgccaaacc tctaacaaaa ctaacaaaaa aggaggaaaa      3960
     atttaattgg agtattgagc aacaatacgc tttccagaca ctaaaagaaa aattaattac      4020
     ggcaccaata ttaaattacc cagattttac taaagaattt ttagtaacca ccgacgcgtc      4080
     cgattacgcc atcggagcaa tattatcaca aggacggata ggtcaggatc gtccaatagc      4140
     ctatgccagc agagtattaa ataaagcaga acgaaattat aatacgactg agaaagagct      4200
     tctagcgata gtatggggag ttaaatactt ccgaccgtat ttatacggaa cgaaatttaa      4260
     aataatcacc gatcatcgac cattagtttg gctattcagc gttacagacc ctggatctag      4320
     attgatacgg tggagactca agctagaaga atatgattac gaaattattc acaaggcagg      4380
     caaaggaaat acaaacgcgg atgcgctaag tagaaatccg attactcttg actcacagtt      4440
     aaacaccgtc gcacacgacg aagagagaaa cgatgacgac gaaagagagg aagagataaa      4500
     acgagaatac actgcagaag aaaagcgaca aatactttat gaatatcatg atgcgccgac      4560
     aggggggcat caaggagtcg cacgaactct gaaccgaatt aaactattac ataattggcg      4620
     cggtataacg cgcgacgtgg aggattatat taacaaatgc gaactctgtc agaaaaataa      4680
     actaaaccaa aaaaccaaac tgccaatggt cattaccgac acgccgaaaa aaccgttcga      4740
     aaaatgtgcg cttgatatag tgggaccact acccattacg aacgccggaa acaaatatat      4800
     cttaactttt caagataatt taacgaaatt tagtaaagcg attccgatag agaatcaaga      4860
     agcaaatacg gtggcaaaag cctttgtcac caaaatagtt gccgaacacg ggattcctga      4920
     aaagatttta actgatcaag gcacgaattt catgagtgaa atatttaaaa atacatgcaa      4980
     gttgttgaag atcgagaaga ttcaaacaac agcctatcat cccgaaagta atggagcatt      5040
     agaacgctca cacagaactt tggcagaata tcttcgacat tacataaatg agaaccaaac      5100
     agattgggac gaatggctac cctacgcaat gtttgcgtat aatacaacgc cacacacggc      5160
     gacgggattc acaccatttg aattaattta cgggcaccga gcggaactac cgacagccct      5220
     gaccaaacca ccgaagataa cttattcgta tgacgattac gtacaagaat tacgagagaa      5280
     gatccgtgca acgaaccaag tagcgagaga atgtgtaaag caagaaaaga taaaatcgaa      5340
     acagtactac gaccgaaacg cgaggatgaa aacatttcaa ataggcgaac aggttctact      5400
     gtacgacgag acagttagac gaggacgctc aaagaaatta gaagcgcaat ggatcggacc      5460
     gtacataatt atcgaaaaac tgtccgaagt aaattacaaa ataaaaatgg gccgccgtac      5520
     gataaccgtg catgcaaatc gaatgaaagc attcgcggaa aactaaaact aataaataaa      5580
     aatagaaata aagaagactc accaaaatag ggttccaagg aagcgccctg agaatatcca      5640
     aaaataaaat aaaacttgcg cactacacag aaatatatga ctataaatgc gtattacgat      5700
     aaaacagata tctacacgat cttccgattt ccagtaatcg ctttcccgac attcaaatta      5760
     ataaaaccga taccgttccc gatacgcgaa cacgcgaata tcttttcatt tatacggata      5820
     aatcacgcct taatagcaat agataaagaa aaccatcatt atatattatt agaagagcgt      5880
     gaactaaaca cgtgcgtaca aaacgatcaa acttacatgt gcgaacaaaa ttttcccgtc      5940
     tatcacatag gtacggacgc gtcatgcgaa gtgcaaattt atataaacgc gcccgaacag      6000
     ctccagaatt gcgaacaagg acgtataatt tccgatacct tatggctaac gctaaccaca      6060
     agcgtggcta tattccgcac aagtaaacca aaaaatagaa attcaatgtg ataagtcgga      6120
     agtaagaaaa ctagagataa atggtatagg taaagtaaaa ttaaacggcg attgtaaact      6180
     aacgacgccg gaaataacga tagtcacgcg acgacagata gcgacccgtt acgtacgagc      6240
     acatttaccg gaatacaatc taacgttaat atcaaaagac atcaaagatg caaaacagct      6300
     cacaggaaaa aataaaactg cgaccgataa taaaagaccc gttagaatta acaagattaa      6360
     gcacaaaaat agatgaatta aataagcaac tagatgagga gccgaacgta ttccaaaacg      6420
     tacattttac ctaccccgtt ggtttcagcg gaatattaat aattataatt gtaataggaa      6480
     taataagtgt aattataaga aaaaagaaag caaaaaatgt aaataaaaat agcgaactgc      6540
     gcagaagaaa cgaaagttca cgattttaaa attttataaa tgtatcgggt tgaagaattt      6600
     tgtaatgcga aaaactccgt ttttctttcc cggcgaggga gggg                       6644
//
ID   Gypsy-5_PBa-LTR repbase;    DNA;    INV; 517 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PBa_;
KW   Gypsy-5_PBa-I; Gypsy-5_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-517
RA   Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 680-680 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 517 BP; 166 A; 126 C; 99 G; 126 T; 0 other;
     tgttgtagcc cgaattactt cttatattat ttttaccata ttatatctta tcctcacgat        60
     cattctcgaa tctcggaata gccgatgcta cggaaacgcc ggccggaaat gcaagcatgc       120
     aaaagcaagt ccgcaaattc caaagcagag cgcgaacgag gaatttgcga gagcgcgccg       180
     ttttgaccat atatatggtc cgatttagaa ttataacgga cgacactact agaatactat       240
     aaaaacggtc gctaaatcac cgagagcggg cagtcacaat acgtaacaag acagttgtac       300
     ttcgtcacgg ccagtcgtta tcagtaatag cgagattcac acgaaacatt gtcaagaagc       360
     cgtaccaata aatcagctac ttaacgaaag tgagtaataa tatttgacca gaagaacctt       420
     ccacctacga tcctgctcgg agttctaact cctaaggctc ggcgaacccg actttcccta       480
     attacaatct tgtaattacc caatccgggc tacaaca                                517
//
ID   Gypsy-5_PPo-I repbase;    DNA;    INV; 2154 BP.
XX
AC   scaffold596_cov571;
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PPo_;
KW   Gypsy-5_PPo-LTR; Gypsy-5_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2154
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2970-2970 (2015).
XX
DR   Genome; scaffold596_cov571; Positions  977572  979725.
XX
CC   'TAAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..1996
FT                 /product="Gypsy-5_PPo-I_1p"
FT                 /note="retropepsin."
FT                 /translation="MMIEGFGNPFLAIDSLPKFTGDDVTYTASRWAQDIED
FT                 NAQIFAWNPQQKLVIARRCLSGTAELWAKTEKPFGTYEDLKAALLKEFPES
FT                 INCKEMHEMMSGRKKRPNETHYQYMLIMKELGKRAKFPDYVSIQYIIDGID
FT                 DYEANKILLYGITTYPVLKEKLNLYETFKQKQKQEFEMRQNSVRSRTVESD
FT                 FRKTLRCYKCGEAGHLSNSCKQGVKCFKCNSFGHIGKDCQMAAMKTQAHGA
FT                 GASGSRNDRKCHPDRSMFVHGECDNDSNQRHECQQVLNVNNNSPMANKSVK
FT                 QVKIGDFTTNCLVDTGSDLNLISFELFSKLNTEYKYEKMLLTGLGSCQIYS
FT                 IGKFDTDLIIDKYCYRINFYIVPTGAMPYDVILGQPFLSNTIAIVDKGVIE
FT                 IRPQYYDDSYQREICVSFSSDDRDTAVEDIVSRYKPLKVKDAPIKLKIVLK
FT                 DDIPVTRRPTLDIIDEKVVKQPFDDYLSKENEDDGIRRLEDVLQIAVDYGL
FT                 EISQKMVKDEYPTGDTMRNVDVLSKNICYVDSELQAQEDDDALQVIGEILK
FT                 RNDYDDYVKENEVIYKGVDEAEVVPELMKQEIIMRTHGVRHSVKKKIKDIV
FT                 KKGYIIRKLDSKIGEVILMCVPCLLSCRKAGKKEGIGCCIK"
XX
SQ   Sequence 2154 BP; 777 A; 291 C; 506 G; 580 T; 0 other;
     aaatctcgtc cgggatatta ccgatcatca aaaaggagta cgacgacaac gacgaatttt        60
     tgttaagaag attaaaacga tgatgattga gggctttggg aatccatttt tggcaataga       120
     ttcgttacca aaatttaccg gagacgatgt tacctatact gcatccaggt gggcgcaaga       180
     tattgaagat aatgcgcaaa tctttgcgtg gaacccgcag caaaaattag taatagcccg       240
     gcgctgtttg tccggcaccg cagaactatg ggcgaagacg gagaaacctt tcggcacgta       300
     cgaggatcta aaagcagctt tacttaaaga attccctgaa tctataaatt gtaaagaaat       360
     gcatgagatg atgagtggaa ggaaaaaacg gccgaacgag acgcattatc aatatatgtt       420
     gataatgaaa gagttgggaa agagggccaa attcccagat tatgtgtcta tacaatatat       480
     aatagatgga atagatgatt acgaggcaaa caaaatttta ctctacggta taacgacgta       540
     tccagtttta aaagagaaat tgaacctgta cgaaaccttt aaacagaaac agaagcagga       600
     gtttgaaatg cgtcaaaatt cagtgaggtc aagaacagtg gaatctgatt ttagaaaaac       660
     gctacgatgt tataagtgtg gtgaggcagg gcatttatca aattcatgca aacaaggagt       720
     gaaatgtttc aaatgtaata gttttggtca cattggtaaa gattgtcaga tggcagcgat       780
     gaagacacaa gctcacggcg caggcgcgag cggtagcaga aatgacagga agtgtcatcc       840
     ggatcggtca atgttcgttc acggagagtg tgacaatgac agcaatcaac gtcacgaatg       900
     tcaacaggta ttaaatgtaa acaataatag tccgatggcg aataaaagtg taaaacaggt       960
     aaaaataggc gattttacaa cgaattgttt agttgacaca ggtagtgatt taaatttaat      1020
     ttcatttgag ttattttcta aactaaatac ggaatacaaa tatgagaaaa tgttgttaac      1080
     gggattaggc tcttgtcaga tatattcgat agggaagttt gatacagatt taattattga      1140
     caaatattgt tacagaatta atttttatat agttcccaca ggcgcaatgc catatgatgt      1200
     tattttagga cagccgtttt tgagcaatac cattgctatt gttgataaag gtgtaattga      1260
     aataaggcca caatattatg atgattctta ccaacgtgaa atatgtgtat ctttcagtag      1320
     cgacgatagg gatacagcgg tggaagacat tgtaagtcgg tacaagcctc taaaggtaaa      1380
     agatgctcca attaagttga aaatagtatt aaaagatgac ataccggtga cacgacgacc      1440
     aacattggat ataatagacg agaaggtggt aaaacagccg tttgatgatt atttatctaa      1500
     agaaaatgag gacgacggaa taagaagact tgaggatgta ttgcagatag ccgtggatta      1560
     tggactagaa ataagtcaaa aaatggtgaa agacgaatat ccaacaggtg atacgatgcg      1620
     aaatgttgat gtgttaagta agaacatatg ttatgttgac agcgaattac aagcacaaga      1680
     agacgatgat gcgttgcaag ttataggaga aattttgaaa cgaaatgatt atgatgatta      1740
     tgttaaggag aatgaggtta tttataaagg tgtagatgaa gcagaagttg tacccgaact      1800
     catgaagcag gaaattatta tgaggactca tggtgtgaga cactccgtaa aaaagaaaat      1860
     aaaggacatt gtaaagaaag gatatattat caggaaattg gacagcaaaa tcggagaagt      1920
     aattttaatg tgtgtaccat gtttattatc ttgcaggaaa gctgggaaga aggaaggcat      1980
     aggctgttgt atcaaatagg aaagggagaa aaacacattt agctgtagat tatatgaaaa      2040
     gatggcctta atttaattat tccttagtag aaacggtttt attttgttat tttgtgtaat      2100
     tttaagtttg atttatggtt agtctgaggg cagactaaag caggatggcc gagc            2154
//
ID   Gypsy-5_PPo-LTR repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PPo_;
KW   Gypsy-5_PPo-I; Gypsy-5_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-247
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2971-2971 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4 or 6bp TSDs.
XX
SQ   Sequence 247 BP; 85 A; 21 C; 49 G; 92 T; 0 other;
     tgtaggataa ggaggttata agaggttata aagaggttaa atatgtttct ttttaatatg        60
     ttttcttttt aattgatttc gaattttata ttttgacgtt cgtttaaaat tagttttaag       120
     ttgagagtcg agagaaaaaa gaggaacgac gatgtaacaa gatgtgtttt tttgtaaaat       180
     ggtgtaaata ttaaaaacag cgatagataa cgagtttatt tttatttgat cgagccacaa       240
     ccccaca                                                                 247
//
ID   Gypsy-5_RP-I repbase;    DNA;    INV; 4887 BP.
XX
AC   ACPB02004727;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_RP_;
KW   Gypsy-5_RP-LTR; Gypsy-5_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4887
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02004727; Positions    6258    1372.
XX
CC   Positions [3987-4463] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1689..4754
FT                 /product="Gypsy-5_RP-I_1p"
FT                 /translation="MRRGIVKPQVDSIFLLSPAENRYFVDLRLGEVTLPSL
FT                 IDTGATHSYLGDEGLSLLESLQLSVAKINSYQVTFTNGVEETVQFTVAFVA
FT                 RVHGRDECVTFSLLPNLSVPCLLGLDALKKWGMVLDTSNATWWFKDCPGNI
FT                 YSFSSPTEGRSGKSTHPVGQVGLKRINADEYRKLEQFLNQEKVVDSSVPGI
FT                 TTLTEHVIDVGNNKPIKQRAYPVSPALQKVINQEVDRMLEEDIIEPSNSPW
FT                 SSPVVLVKKTNGDYRFCVDFRKVNSLTKKDVYPLPHMSGLLDQLRSCRYLS
FT                 KIDLAQAYHQIPLAPQSREITAFIVLGRGLFQFKRLPYGLCGAPATFQRLL
FT                 DRIITPELAPACFAYLDDIIIATDTFGDHVHYLKLVFARLREAGLRMNFDK
FT                 CTFGCSEMRYLGFVVNEQGLQVDPEKIEPLLKFPTPQNVTELRRFIGLASW
FT                 YRRFISDFSCRIRPLTQLLRKGQRWIWTAEQEAALQEIKTLLTSAPILARP
FT                 DFSRTFLLQTDASAEGLGAVLTQDTDNLERVIAYASRALQGAERNYSVTEK
FT                 ECLAVLWAIKKFRQYLEGYHFKVITDHASLKWLHNLKNPTGRLARWALELQ
FT                 GYDFEVIYRRGSAHAVPDFFSRLPSRSLEGDQEDNPVSLASCMNVSSDLWY
FT                 QNKLQSVQQQPGNHPDWKVVDGQLFRHVLEDIELTLEDVSRAWKLVVPEED
FT                 QLKVIQENHDLPEAGHLGFEKTLEKVKRHYNWPGMRRDIARYIRKCRVCQT
FT                 TKPEQRPSVGKMNLKKYTQPWDTVAVDIQGPFPRSSNGFSYLLVFLDTFSK
FT                 WTEIIPIRLANAKTVAKNFRQFIIFRWGTPRILHSDNGTPFINKIMQGLAD
FT                 TFGITLTQTPPYWPQANPVERTNRVIKTMISSYVEGNHKQWDCYIPEFMFA
FT                 INTSWHSSLGCTPAYLNFGRELEAPNTHFRKSSPSRLSPLTTSIWTGHLEK
FT                 LKELRLLAEKNLSEASTKQGHYYNLRRRAPQFKEGDLVLRRAHHLSSGAEG
FT                 FAAKLALKLKALQDCH"
XX
SQ   Sequence 4887 BP; 1417 A; 1053 C; 1117 G; 1300 T; 0 other;
     taaatggcgc ccgaacaggg acctcgaagc agttacttat aactataagt aattatagtt        60
     atagttactc tgtaactaca gagagcttaa ggaattctgg cttgcactat acatatttca       120
     gagtagcttg ccatttcgat gcatgaagag taattgccat ctttaacttt ctggtgcatg       180
     atcaaagctg tagagagaga aaagaaggta aattttatat gtattctatg taaatcctta       240
     ctgatttaaa gctttctgag atcatagaaa attctattct ggtggttaca aaccagaaat       300
     agcaaatatt ggagtttaaa gataaaacaa acaatatata cacttgtaag tgcaagtaag       360
     tatatttttt ttgtagagaa caggcacatt gctattaagg ttaggttgtc tagttcaagg       420
     tgaggttcgt tacctaccta tttatttgct ttgtcatttc ctgtgctaga ggggggtatt       480
     aatggtaaac ccagaagacc agttcctcaa acctaaactg ggttggatct atgaggccaa       540
     taaggagacc ttaatagaaa tcttaaacaa tttcagtcta agtacagaag gaaatgttgc       600
     ttccttaaga cagaccctaa gagactactt tattaaatat cccacttatt ggacagtacc       660
     ttctaacatt gaaatgggag gtccagaagt gaaatcagct agcactagtg ggggaaaaga       720
     gcaaccaaga tattcaccat ttcaatatcc cggtttcaat tatcatagta ccttcactga       780
     aaaatttaac aatgtctcca attcgttaag cccggaggac ttccttttaa aaataaacga       840
     aaagcggaag gcttggaaga taccagatga ggaccttcta gcatacctcc cggagctgtt       900
     agtaggcacc cctctaaact ggtaccgctt gcaaaaggac aattggagtt cctgggaaga       960
     gtttgaaatc tcgtttcgga aatctttctt tccttttgat taccaggaaa aattgagaaa      1020
     ggagattgac cggcgtaccc agggtgagga tgagagaatt tttgacttcg ttatctccct      1080
     tcagacttta tttagacgtt tacagaaacc attaccggaa gcggaacagg tttctattgc      1140
     ctttaacaat ttattaccta ggtatcaatt atatatacgt ccgacggaaa ttacctcatt      1200
     tactcaatta atcgataatg gccaacaatt cgaaaggatt gaagaccgca caaagacttt      1260
     tcgaccacca cccactaaag agaaatgttt agtgcctgag ctgcttatgt tcgtaaagaa      1320
     aaaagttcaa taccccagac taagcccaaa cctttaatgg catccctaga gggtgcctcc      1380
     agcgatagcc accattcaga acaatcctcg gggaaaataa agtcagctcc ttctccaaaa      1440
     aaggctaaac ctaagccaac ggaaaggaga ttgctttcta agccagacaa tctgatatgt      1500
     tggaattgtt tggatcaggg tcaccgctat ccgcagtgta agaaacccag agataaagta      1560
     ttctgttacc attgtgggac aagaggctat actaggagga actgcccgac ttgtgagggt      1620
     tcgggaaact cctaaggggt caggttgctg gagtcctatc tgatcccgtt cctaacgact      1680
     ccgacactat gaggagggga attgttaaac cccaagtcga ttctatcttc ctgctgagcc      1740
     cggctgaaaa cagatatttt gtggatctgc gtttaggcga ggtcacccta ccgtcactaa      1800
     tagacaccgg cgccacgcac tcgtatttgg gagatgaggg attatctctt ttggaatctc      1860
     tccagctatc agtagctaag atcaattcct atcaagtaac gtttaccaat ggagtggagg      1920
     aaaccgtcca gttcactgtt gcctttgtag ccagggtaca tggacgtgat gagtgcgtta      1980
     ctttctctct cttgcctaat ttgtccgtcc catgtctttt ggggttagat gccttgaaga      2040
     agtggggtat ggttttggat acctctaacg caacctggtg gttcaaggat tgccctggaa      2100
     atatctattc cttctcttcc cccacggagg gaagatctgg aaaatcaacc catccagtgg      2160
     gtcaggtagg ccttaaaaga attaatgccg atgagtaccg taaattggag cagttcctta      2220
     accaagagaa agtagttgat agttcggtac ctgggatcac gactctaaca gagcatgtga      2280
     ttgatgtggg gaataacaag ccgataaagc aacgggctta tcccgtatca ccagcgttgc      2340
     aaaaagtcat taaccaggag gttgacagaa tgttagagga agacataatc gaaccatcga      2400
     acagtccttg gtctagcccc gttgtgttgg tgaagaagac caacggagat tataggtttt      2460
     gtgtagattt ccgcaaagta aattctttaa caaaaaagga tgtgtatccg ttaccacaca      2520
     tgtccggtct cttagatcaa ctgcgatcgt gccgctacct atctaagata gatttggctc      2580
     aggcctacca ccaaatccct ctagctccac agagtcgaga gattacagct tttatagtac      2640
     tggggagagg attatttcag ttcaaaagac ttccttatgg actatgtggg gccccagcta      2700
     cctttcaacg cctgttggat cgcatcatca cacccgaact agctccggct tgtttcgcgt      2760
     atttagatga tattattatt gcgacggata ctttcgggga ccatgtgcac tacctgaagc      2820
     tagttttcgc aagacttcgt gaagcggggt tgaggatgaa tttcgataaa tgcacattcg      2880
     gttgttccga aatgaggtac cttgggttcg tggttaacga gcaggggttg caagtagacc      2940
     cagagaagat agaaccttta ctgaaatttc ccaccccgca aaacgttaca gaacttcgtc      3000
     ggtttatcgg gttggcctcc tggtatcggc gcttcatttc tgatttttcg tgccgaatac      3060
     ggcctttaac ccaacttttg aggaagggtc agaggtggat ctggaccgcg gagcaagagg      3120
     cagccttaca agaaatcaag acccttttaa cttccgcgcc catcctcgct cgccccgatt      3180
     tctcccgtac cttcttactc caaactgatg cgagtgctga gggcctaggg gcggtactga      3240
     ctcaagatac cgataatcta gagagagtta tcgcatacgc tagtagagct ctgcaaggag      3300
     ccgaacgtaa ttatagtgtg acagagaaag agtgtctagc cgtcttgtgg gctataaaga      3360
     aatttcgcca atatttggaa gggtaccatt ttaaagttat taccgaccat gcaagtctta      3420
     aatggcttca caatcttaaa aaccctacag ggcgattggc caggtgggca ttggaactac      3480
     aaggctatga ttttgaggtg atataccgtc gcggttcagc tcacgccgtg cccgacttct      3540
     tttcccggtt gccgtcccga agtctggagg gtgatcagga agacaatccc gtttccttgg      3600
     cttcgtgtat gaacgttagc tccgatctct ggtaccaaaa caaacttcag agcgtacaac      3660
     aacagcctgg taatcatccg gattggaagg tggttgacgg ccagctcttt agacatgtgc      3720
     tagaggatat tgaattgacc ttagaggatg tctcgagagc ctggaaacta gttgtacccg      3780
     aagaggatca acttaaagtg attcaggaaa atcatgacct tcccgaggct ggtcatttgg      3840
     gattcgagaa aaccctggag aaagtaaagc gccattataa ttggccaggc atgcgccggg      3900
     atatagctag atatatccgg aagtgtagag tatgccaaac tacaaaacca gagcagagac      3960
     caagtgtagg gaaaatgaat ctaaagaaat acactcaacc ttgggatacc gtcgcagtag      4020
     atattcaagg tccttttccc cgatcatcga atggattctc ttatctttta gttttcttag      4080
     ataccttcag taagtggact gaaataatac ctattaggtt ggctaatgcc aaaaccgtgg      4140
     ctaaaaattt tcggcagttt attatcttca gatgggggac accccgaata ctacatagcg      4200
     ataacggtac acctttcata aacaaaatca tgcaagggtt agctgatacc tttggcatca      4260
     cactaacgca gacgcctcct tattggcccc aagccaaccc agtggaaagg acgaatcgcg      4320
     tcatcaaaac aatgatttca tcttatgtgg aagggaatca taaacaatgg gattgttaca      4380
     tacccgaatt tatgtttgcc attaatactt cctggcactc ttccttaggg tgcacgcccg      4440
     cctatttaaa ctttgggcga gaattagagg cccctaacac acattttagg aaatcaagcc      4500
     ctagtaggtt aagcccttta actacctcta tctggactgg tcacctggaa aaattaaagg      4560
     aacttcgatt actggcagag aagaatctga gtgaagcgag taccaagcag ggccactatt      4620
     acaacttgcg tcggagagcc cctcaattca aggaaggcga cttagttctc aggcgtgcac      4680
     atcatctctc ttcaggagca gaaggcttcg cggctaagtt ggcgctgaaa ttgaaggccc      4740
     ttcaggattg ccactaaaga gtctgcaacg ttttccagct gcaggacgaa gatggcaacg      4800
     acgttggccc ttgccatgca gggcagatga agctgtacca ccgctaagat cagcgtgaag      4860
     ggtctcacgc ttccaaagga ggggaag                                          4887
//
ID   Gypsy-5_RP-LTR repbase;    DNA;    INV; 481 BP.
XX
AC   ACPB02004727;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_RP_;
KW   Gypsy-5_RP-I; Gypsy-5_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-481
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02004727; Positions    1371     891.
XX
SQ   Sequence 481 BP; 131 A; 87 C; 80 G; 183 T; 0 other;
     tgtaaccgcg taggttggca gatctgtcag ggacagctag cgccagtagc ggaacccaac        60
     gaaataataa taaccttctc tccagtctct agagcatgtg cacaaaaagc ttattttctt       120
     agtatttctg tttttttctt gttaatcagc tttagttttg ttattttatt attagtttgc       180
     cttagtttat cttttgttat gcaatagtgc atggtttctc ttttagtttt tcaagcatgt       240
     ctatctagca ttactcttct gcttgtatat atcaattgct ttactattat ctatgcgttt       300
     gtaagtattt ctatgtatat atatattaat gtaaatatcc ctgtacacta attgtaaata       360
     gactctttat ttaacgtgag gtaggtaact gcttcgacct cccctactca cctgagctcc       420
     ccaaggagaa gtattacaga tcaaaacata atttcgaagc ggaaaaaagt aagtttggtc       480
     a                                                                       481
//
ID   Gypsy-5_SI-I repbase;    DNA;    INV; 4823 BP.
XX
AC   AEAQ01012110;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SI_;
KW   Gypsy-5_SI-LTR; Gypsy-5_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4823
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01012110; Positions   15207   10385.
XX
CC   Positions [2851-3327] - Integrase core
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(541..2247,2251..3693)
FT                 /product="Gypsy-5_SI-I_1p"
FT                 /translation="MTSVKGQKTTSTVKDALNILRIEDMIKDVEETFTEAQ
FT                 NQKVTKANVPLITIKFKAFTVKALVDTGAQISAVTKKLYDALVTTNDIIDA
FT                 LPVRKFFLKGDFARRGAAVSNKARIEFEFNGKKFQYEFYIVEQMAYRVVLG
FT                 IDFLVKYHTNVLCDDRITVNFEAEADNEPKTIATITMEETDEALRQIIHKN
FT                 AEIFQDGIGLVNHYKHKIVVKSNAPYKKRLYPIPDKHFKKVTSYIDDLEEQ
FT                 GIVRKAATQYINPLVVVIKKSGDIRLCLDAKEINKRMCEDYAQPPTIEEVV
FT                 RRFGPNGYYTSLYISNAFWQIPLEEQSQNYTGFTFNGEMYVFRRMPFGIKT
FT                 AGASFTRAMSKALGPNANDFLIVYLDNILIASKTLEEHIKHIDYVLGKLKE
FT                 VGFRLNKDKCEFIQREIKFLGHTFNEIEAEINADTKLAIRNCQRPKNKRDV
FT                 QVFRGLVNWDRRFIKNLARMTKPLEELLRKGKKFAWNDEQQKSFEEIKLAF
FT                 EEAPNLYLTRPGYKFGIYVDAIKTGLGARLYQYKEDGREKFTIAYASRALH
FT                 GAESNYTITELECLAVVWALKKHTLLLRRQVRVHTDHRALQFLSTCVQNNT
FT                 RIARWFSFLQEFDLDVIHIPGKVNTFADTLSRSADERRVLMKNDKCIGLIE
FT                 NARDVTRTDDWVKIIREAQQAHPDLISAPQTDPHVLLERDNIVRHMDGNSD
FT                 KIVLPEEKNWKMMKQAHKLLAHFGTDKLIGFMKKYFIGKKFEKYARDVVAS
FT                 CKVCHATKFYTRPTVGMELPDRPGKAISLDLCGPWPQSKRKYKHVLVIMDK
FT                 FSKLVKIYPLKDKKLATIINKLENDYFPNIEVPEEILTDNDGQFLSRRWQQ
FT                 FAEEYNCTIKKTTPFNLQSNPVERVMRELGRIMRTYASHEHTLWANTVQRA
FT                 ERVINATVHSSTGFTPNELHFGVDDHLELPREILPRIYEEILQDDKIIEAR
FT                 VNLERNAQKRKKQADKFQTVNVYQPGDIVWIKTRPRSDARKRKVAKIHLLY
FT                 DGPFQVLDVLRRNAYLIGDLNGNVRGAYNTRLLRPDREPHMRPR"
XX
SQ   Sequence 4823 BP; 1825 A; 1020 C; 1027 G; 951 T; 0 other;
     taaaaacgaa aaaagtactt atttcatgga caaacgagat aacgaaccac aaaacgtgga        60
     acaaaatcac atttccgtta agaaaagagc ctcgagaacg gaacgcaata aagaaaataa       120
     acaattaggg gccaccaata ctttaacaaa ttccgcaaag aaaagagtcc caacagcgga       180
     acatactaat aaaaaacaaa cacaggggac cacaaataaa caatatacta acagtacaac       240
     agtccgagaa caagagtcaa ttacagaaaa gaagattcta agggctaaaa atgagaagca       300
     gcgtaaaacg accggaacca acccaattcc agtaactcta gaagacggaa aagtggaagt       360
     gatgaaggaa acaccgagtc aagctgtact agatcagcgc aaagtgatct tttcaaagga       420
     tttgaaaagg gaacgaccca gtgacgacga aattgtcacg agaaaagttc cagaaaaaat       480
     aaacccacaa attcaaacaa ttcgtgcgga taacgccaat tcccacgaga aatcagctaa       540
     atgacaagtg ttaaaggcca aaaaaccaca agcacagtca aagatgcatt aaatatcctt       600
     aggatagagg atatgatcaa agacgtggag gaaaccttca ccgaggcgca aaaccaaaaa       660
     gtcacaaagg ctaatgtgcc gctaattact ataaaattca aagcgttcac agtgaaggcg       720
     ctagtggaca ccggagcaca gatttcagcc gtaacaaaga agctgtacga tgctttggtc       780
     accaccaatg atataattga cgcattgcca gtgagaaagt tcttcttaaa aggcgatttt       840
     gcaagaagag gagcagcagt gtcaaacaaa gccagaattg aattcgaatt taacggcaag       900
     aagtttcagt acgagttcta catcgtcgaa caaatggcat acagagtggt acttggaata       960
     gacttccttg taaaatatca caccaacgtg ctatgcgatg atagaatcac ggtgaatttc      1020
     gaagcggaag ccgacaacga accaaagacc atcgcgacaa taacgatgga ggagactgac      1080
     gaagctttac gccaaataat ccacaaaaat gccgagattt tccaagatgg cataggattg      1140
     gtcaaccact acaagcacaa aattgtggtt aaatcaaacg caccttacaa aaagagatta      1200
     tatcccattc ccgataaaca ttttaagaaa gtcacaagct atattgacga cttagaagaa      1260
     caagggatag ttagaaaagc agccactcaa tacataaacc cacttgtggt tgtcattaaa      1320
     aagagcggag acattcgtct ttgtctcgac gccaaagaaa taaacaagag gatgtgcgaa      1380
     gattacgcgc agccaccgac aatagaggag gttgtccgca gattcggacc aaacggatac      1440
     tacacctcac tctacataag caatgccttt tggcaaatcc cattggagga gcaatcgcag      1500
     aattataccg gatttacgtt taatggcgaa atgtacgttt ttcgtcgcat gccattcgga      1560
     atcaaaacag ccggagcttc tttcaccagg gctatgagca aagccttagg cccaaatgca      1620
     aacgactttc taatcgtcta tctcgacaac attttaattg cctccaaaac cttggaagag      1680
     catattaaac atattgatta cgtccttgga aagctgaagg aagtaggttt ccgtttgaac      1740
     aaggacaaat gcgagttcat acaaagggag atcaaattct taggccacac tttcaacgag      1800
     atcgaagcgg aaataaacgc tgatacgaaa ttggccatta gaaactgtca aagacccaag      1860
     aataagagag acgttcaagt gtttcgcggt cttgtaaatt gggaccgcag atttatcaag      1920
     aacctagcca gaatgacgaa gccattagag gagcttctaa gaaaaggaaa gaagtttgca      1980
     tggaacgatg agcaacaaaa gtcatttgag gagataaaat tagccttcga ggaagcacca      2040
     aacctttatt tgacccgtcc aggttacaaa ttcggcatat atgtcgatgc aataaaaacc      2100
     ggattgggag cccgactcta ccaatacaag gaggacggca gagaaaaatt taccattgca      2160
     tacgccagcc gtgcgttgca tggagctgaa agtaactaca caatcaccga actagaatgt      2220
     ttagctgtag tttgggccct gaagaaatga catactcttc tactaaggag acaagtgcga      2280
     gtacacactg accaccgagc cctgcagttc ttgagcactt gcgtgcagaa caacacaagg      2340
     attgctagat ggttcagctt tctacaggag ttcgacctag atgtaatcca tattccaggg      2400
     aaagttaata catttgccga tactttgtcc agaagcgcag acgaaaggcg cgtactcatg      2460
     aagaatgaca agtgcatcgg tttgatcgaa aatgcaagag atgtaaccag gaccgacgat      2520
     tgggtaaaaa tcatccgcga agcgcagcaa gcgcacccgg acttgataag cgcaccacag      2580
     acggatccac acgtgttact ggaaagagac aacatcgtcc gacatatgga cggaaactct      2640
     gataaaatcg tcttaccgga ggaaaagaac tggaagatga tgaaacaagc gcacaaattg      2700
     ttagctcact ttggtaccga taagttaatc ggattcatga aaaagtattt catcggaaaa      2760
     aaattcgaga aatacgccag agatgtggta gcatcgtgca aggtgtgcca cgcaacaaag      2820
     ttttacaccc gaccaaccgt aggaatggag ttgccggaca gaccaggcaa ggccatatca      2880
     ctggacctat gcggaccatg gccacaatca aaaagaaaat acaagcacgt actcgtgatt      2940
     atggacaaat tctccaagct agtaaagata tatccactga aggataaaaa actggccaca      3000
     atcatcaata aattggaaaa cgactatttt ccaaacatcg aagtgccaga agaaattctt      3060
     acggacaacg acggacaatt cttgtccaga agatggcaac aatttgcaga agaatataac      3120
     tgcacaataa aaaagacaac gccattcaat cttcagtcca acccagtaga aagggttatg      3180
     cgtgagctag gacgaataat gcgtacttat gcttcacacg aacatacctt atgggcaaat      3240
     actgtacaac gcgcagaacg cgttatcaat gccacagtac actccagcac tggatttacg      3300
     ccaaacgaat tacattttgg tgttgacgat catctggagc taccaagaga aattttgccg      3360
     cgaatttacg aggaaatctt acaagacgac aaaattatcg aggcgcgtgt gaacctagag      3420
     agaaacgcgc agaagagaaa aaaacaagcg gacaaatttc agactgttaa cgtctatcaa      3480
     ccaggagaca ttgtatggat caaaacaagg ccacgttcgg acgcgagaaa gagaaaagtc      3540
     gcaaaaatcc atttactata cgacgggcct ttccaagttc tcgatgtgtt gagacgaaat      3600
     gcatacctaa ttggagacct caacggaaac gtgaggggag cctacaacac ccgtctgcta      3660
     aggcctgatc gcgagccaca catgaggcca cgataggagg ccctagatga acaaatagac      3720
     gaacccgagc aggactcacc acaaacgagc gtgtaccagg atgccgaaga cggttcaaaa      3780
     agttacagtg aaagatacga gagtcttgat caagaattac cacaagacga tcaattagag      3840
     gagaacgaat atgatccgga tgaatatcta tcagaggatc aagacgaaca atactatccc      3900
     gacgaggatg gcaaacagca tattacagag gaggaagaag attactccga accggaagct      3960
     gacgaacaaa tttcggacta cgaacgattt gataccgctg agtacaaaca tgaatatgta      4020
     cccatagaag cagagcaata cctcgaagag ggtgaccaaa ttgtggatac aaccacaaac      4080
     caaacactgg atgattccga aattatcgaa ttatccagcg aacaggaacc aatcgaagaa      4140
     tattcgcagg aagactcaca atatcctgac aagcacgaga caagaagaac tatccgagga      4200
     agaacacttc acggaatatg atcccagagg aggactattc ctagacgaga taccacgatg      4260
     gcatgaagaa aaaaacaaat acattgtcga agagccacaa gatggtgatc cagaggatag      4320
     aatcacgtca attcgatcgc agaaccgcag tatagcgaca cagggtcaac aattgacaca      4380
     attaatggca aacttgccaa accaacacaa ggagacctac caggacaacc gtgttcaagc      4440
     cagaatgaag aaaacaagat attctaccag gggtggaacc acacatgcca cactgaaaag      4500
     tgaatatcac ctgtgcgtaa ttactattaa ggaagaaccc aagaaacagt ttaatcttcc      4560
     agaatgcact ataacgccaa ttcgcagaaa aattgcaata aatggcgtat atataaacga      4620
     aaacaataaa agaccacgag aagaggtcga aacagtgaaa ccagattcaa aagtgaaaag      4680
     agataccgca aataatacgg taacaacaaa aaatctaaaa aatattaccc aaagatactc      4740
     cataaggaac atcaaggaac atcccaccaa atctacaaaa attgccgttt tattaaaaca      4800
     aaacgacaat ttggcgggaa aat                                              4823
//
ID   Gypsy-5_SI-LTR repbase;    DNA;    INV; 589 BP.
XX
AC   AEAQ01012110;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SI_;
KW   Gypsy-5_SI-I; Gypsy-5_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-589
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01012110; Positions   10384    9796.
XX
SQ   Sequence 589 BP; 224 A; 120 C; 101 G; 144 T; 0 other;
     tgcaaccgcg ggaaaatctt ccagtggttg cccttcagag gatcccgtga gaaggggaac        60
     tccccattaa gacatcctcg aaaccaaata tggagccaaa gagcagggac aaggcaccag       120
     agtacaaagg gtcaaatgcc aagataatcc cggaccaggc gagactcaca gatgacagcc       180
     agagtgacaa caacgatcag gaaataaaca atcccacaaa ggaagcagac gagacagcgt       240
     tcacgcccat ggacataacg attccggacg acaacacgca atcccaacct ataaaggcaa       300
     cagaggagta agcgacaaca acaacggaga attagggtta caaaacacta acaagaatag       360
     tcgcaagagt aattctatca taattttttt tatttttaat tattttatac tcattgttat       420
     ttttattacg actttaaact atattattat aattgtaacc ataaacataa acatagaaac       480
     ataccataat ttagatttaa acgtttacta acacacaacc taatgataca tatatattag       540
     cagaatagtt tcatttatta cttaatattt tagcatttat attgtgtca                   589
//
ID   Gypsy-5_SiCu-I repbase;    DNA;    INV; 4134 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-4134
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5034-5034 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           107..4108
FT                 /product="Gypsy-5_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSVGKLEQFNNNGDDFESWVGVFQNYLTANGVNLVDS
FT                 SGKPDADGVAKARAIFLTTVGVPTYTLLKQLMSPDEPETKDLKEIIKVLKE
FT                 HFRPAPKAISERFRFYKRVQQPGESVGTFIAELRKLAVTCKFDKLDTSLRD
FT                 QFVCGLSSESAQKSLLMEDDNLKLDKAVQIATCQEAADKSTQMIRGNGMNS
FT                 VIMQGSLESTNKIFTGKRNGGNKYRKDSSSCPNCGKDHSKKDCPHKDATCH
FT                 KCNKKGHFANFCWSGEKSGNKKNRKGGNGVKSVNQVGDSDDLIYIDVKING
FT                 KAHTMEWDTASGTSFIPEEVWKMIGSPNLEKSAKKFKTYTGQVFQSRGQFD
FT                 CQIEYNGQQKTHKMQVAEGSSLFGRDLTKKFQMDWRNIQSQCSPVSQVVED
FT                 SSVQPLLKEFSDVFDSQVGRIRHFKAKIVLRDDAVPRFQKARPVPFSIRDR
FT                 VDKELQRMEEQGVITKIDHSDWASPLVVVPKTSGRVRITGDFKQTINNQLC
FT                 VTQYPLARVEDLFECISGGETFSKFDGADAYHQVEVEEASRKFLVVNTHRG
FT                 LYQYNVLPQGIASSPAIFQEMMDTMLRGIPMCGSFVDDGICSGQSSQQHAK
FT                 TLREIFTRMRDWNYKLSREKCLFMKPSVKFLGHVIAKDGIRTDPGKVEAIM
FT                 AMRAPKDVHEVNSFLGLVNFYAKFIPGLSTVSEPLNALTRSDVEWSWSRKC
FT                 KEAFDHVKKLIVSAPVLSHFHQKLPIGLACDASSVGVGCLIYHKMEDGSER
FT                 PIAFASKTLSKAERNYSQVEKEGLAIVIGVKRFMQYLFGKRFTLITDHAPL
FT                 LAIFGRNRALPPLVANRLHRWALYLSGFDFDIQYRNTHHHGNADALSRFPL
FT                 EENSTADEETDLCVKQIVEENPVTSKKVRQFTSRDPVLSAVIRQTQAGWPX
FT                 KQNQLPESLRPYFVHRDEYCVEQGILMWGLRVVVPPQLRSSVLNQLHETHP
FT                 GVVRMKSIARQYVWWPGVDDDIEKMVKTCTSCAVSKDNPATAPLHPWSYPE
FT                 KAWQRLHMDLAGPFKNNMWLIVVDAYSKWPEVFRMGKDTTSQKVISFVRET
FT                 FARFGLPETIVTDNGPQFVSKEFEKFCSDNHVRHTTSSAYHPRSNGEAERF
FT                 VRTFKSSMDRIGNNEDVNLSLCQFLISYRSTPHATTNAAPAELMMKRSMRT
FT                 LFDLMRPDVNSRVRYSQEKSAEEFSGSSPVRTFSPGEEVWVQTFSKGQQKW
FT                 SLGKVKKPVGPVSYQVEVDNRVMKRHVDHMLSGAAAQTPRQDGNAGGSPAA
FT                 EASSQGRPMTPSPASTVVMQSPVVLDGNPIPALQNPQVGVQVETPVSVRGP
FT                 AQGGRRYNMRAARRKPDFLKYN"
XX
SQ   Sequence 4134 BP; 1209 A; 829 C; 1116 G; 977 T; 3 other;
     ttggcgacga gaaaatcgct ttttcagtaa actctgaatt tttagtcagt ttagtcaagt        60
     tcttctgtgt agtgtataaa ctgtatatcc aatcattcca gccattatgt cagtgggtaa       120
     actcgaacag tttaacaata atggagatga ctttgagtca tgggttggcg tgtttcagaa       180
     ctatttaaca gccaatggag tgaatttagt ggatagttca gggaagccag atgctgacgg       240
     agtggccaag gccagagcca ttttcctgac gacggtgggc gttcctacct acaccctgtt       300
     gaagcagttg atgtctccgg atgagccaga gacgaaggac ttgaaggaga taattaaagt       360
     gttgaaagag cactttaggc cagcaccaaa agccatatcg gagcggtttc gattttacaa       420
     gcgagtccag cagcccgggg aaagcgttgg taccttcata gcagagttgc ggaaacttgc       480
     tgtgacatgc aaattcgata aactggatac atccttgaga gatcaatttg tgtgtgggtt       540
     atcatctgag tcagcccaga agagtctgtt gatggaagat gacaatttga agctggataa       600
     ggcggtacaa attgcgacgt gtcaagaagc tgccgataag tctacccaga tgatcagagg       660
     caacggaatg aattcagtca tcatgcaagg atcactggag agtacgaaca agatatttac       720
     tggcaagcgg aatggtggga ataagtacag aaaagattcg tcatcatgtc ctaattgcgg       780
     taaggatcac tccaagaaag attgtcctca taaggatgca acttgccata aatgtaacaa       840
     aaaggggcac tttgcgaatt tctgttggtc tggagagaaa tcaggcaaca agaagaatag       900
     aaaaggggga aatggagtga agtcggtgaa tcaagttgga gattcagacg acctaattta       960
     cattgatgtc aagatcaacg gtaaagcgca cacaatggag tgggatacag cgtcaggaac      1020
     gagctttatt ccagaagaag tttggaagat gatcggatct ccaaatttag agaagtcagc      1080
     caagaagttt aagacttaca cgggccaagt gttccagtca agagggcagt tcgattgcca      1140
     gattgagtac aacggtcagc agaagactca caagatgcag gtagcggagg gatcatcact      1200
     gtttgggcga gatctcacaa agaagtttca aatggactgg agaaacatcc agagccagtg      1260
     ctcacctgtc agtcaagttg tggaggattc atcagtgcag ccattactga aagagttcag      1320
     tgatgtcttc gattctcaag ttggtcgaat aagacatttc aaggcgaaga tagtcttacg      1380
     ggatgatgca gttccacggt tccagaaggc acgtccagtt ccattttcca taagggatag      1440
     agtggacaag gagttgcagc gtatggaaga acaaggcgtc atcaccaaga ttgaccattc      1500
     cgattgggcg tctccattgg tggtagtgcc gaagacaagc ggaagagtga ggatcacggg      1560
     cgacttcaag caaactataa ataatcagct ttgtgtgacg caatatccac tagcaagagt      1620
     ggaggacctg ttcgagtgta tttccggcgg agagactttt tccaagtttg atggagcgga      1680
     tgcttatcac caagtggagg tggaggaagc ttcaagaaag ttcctggtgg tgaacacaca      1740
     ccgtggattg tatcaataca atgtgttacc acagggcatc gcgtcgtctc cggccatttt      1800
     tcaagaaatg atggatacca tgctcagagg tattccaatg tgcggctcat ttgtggatga      1860
     tggaatttgt agtggccaaa gcagtcagca gcatgccaaa acgttaagag aaatttttac      1920
     aaggatgcgt gactggaact acaagctttc ccgtgaaaaa tgtttattta tgaagccgag      1980
     tgtgaagttc cttggtcacg ttattgcaaa agacggaatt cgcacggatc cgggaaaagt      2040
     ggaagccatc atggcaatga gagcaccgaa ggatgttcat gaagtcaatt cgtttttggg      2100
     attggtgaat ttttatgcaa aattcatccc tggcttatca acagtcagcg agccattgaa      2160
     tgctctwacc cgttcagatg tggagtggtc atggtccagg aagtgcaagg aggcgtttga      2220
     tcacgtgaag aagctcatcg tctcagcacc agtcctgagt cactttcatc aaaagctgcc      2280
     aattggatta gcttgcgacg cttcctcagt tggagttggc tgccttatct accacaagat      2340
     ggaggatggc agtgaaagac cgatagcctt tgcgtcgaag accctgtcca aagcggaaag      2400
     aaattattcc caagtggaga aggagggcct tgcgattgtc attggagtga aaagatttat      2460
     gcagtatctt ttcggaaaga gatttactct cattacagac catgctccgc tcctagcgat      2520
     atttggaaga aatcgcgctt tgccaccgct ggtagcaaat aggctacaca gatgggcgtt      2580
     gtaccttagt ggctttgact tcgacatcca gtacagaaat acacatcatc acggaaatgc      2640
     tgatgckcta tcgagatttc cgttggagga aaattcaaca gcagatgaag aaacagatct      2700
     gtgtgtgaag caaattgtgg aagagaatcc agttacttcc aagaaggtga ggcagtttac      2760
     ctcacgagac ccggttttgt cagcagtgat aagacagacg caggcaggtt ggcccmagaa      2820
     gcagaaccag ttaccggaga gcttaaggcc atactttgtg caccgagacg agtactgtgt      2880
     ggaacaaggg attttgatgt ggggactacg tgtggtggtg ccgccgcagc tccgttccag      2940
     cgtactgaac caacttcatg aaactcatcc aggagtggtg aggatgaaga gtattgcaag      3000
     gcaatatgtc tggtggcctg gcgttgatga cgacatagag aagatggtga agacgtgcac      3060
     atcatgtgca gtcagcaagg ataacccagc aacagcacca cttcatccct ggtcataccc      3120
     ggagaaggcc tggcagagat tgcacatgga tcttgcagga cccttcaaga ataatatgtg      3180
     gctaattgta gtcgacgctt attccaagtg gccagaggta tttcggatgg ggaaagatac      3240
     tacatcacag aaggtgatta gttttgttcg ggaaacgttc gcaagattcg gtttgcctga      3300
     gacaatcgtt acagacaatg ggccgcagtt cgtgtcaaag gagttcgaga aattttgtag      3360
     tgataaccat gttcgtcaca ctacaagcag tgcgtatcat cccagaagca acggagaagc      3420
     ggagcgtttt gttagaactt tcaagagttc tatggatcgc attgggaaca atgaagacgt      3480
     caacctgtca ttgtgtcaat ttctcatctc gtaccggtcc actccccatg ccacaaccaa      3540
     tgcagcgcct gcagagttga tgatgaaaag aagcatgaga acgctctttg atctgatgag      3600
     accagatgtc aactctcgag tgcggtacag tcaagaaaag tcggcggagg agttcagtgg      3660
     aagctctcca gtccgcacat ttagtcctgg agaagaggtg tgggtccaaa cgttctcaaa      3720
     ggggcagcag aagtggtctt tgggaaaagt caagaaacca gttggtccag tatcctatca      3780
     agtggaagtg gataatcgag tcatgaagag gcacgtggac cacatgctca gtggtgcagc      3840
     agcgcaaacg ccaagacaag atggtaatgc cggaggctca ccagcagcag aagctagcag      3900
     tcaaggacga cccatgacac catctccagc cagtactgtg gtgatgcagt caccagtggt      3960
     cttggacggc aatccaatac cagcactaca gaatccgcaa gttggagttc aggtcgagac      4020
     tcctgtgtca gtccgtggac cagcccaagg gggtcgccgg tacaacatga gggcagctcg      4080
     gaggaagcct gacttcttaa aatataactg aaggtcaaag taagaaaagg ggaa            4134
//
ID   Gypsy-5_SiCu-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-299
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5083-5083 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 299 BP; 98 A; 54 C; 51 G; 96 T; 0 other;
     tgtagtgtag tacattaata tttctattgc cattgagttg ctcagtactc ccacattgtc        60
     atgtgtgaaa catgaatgta gagaagcgtg cattgcacac cagagattga gatctgctgg       120
     agttctggag aatgactctt gttgtagact tggtgctgag cagaccacat aaaataacta       180
     cctatttaat tgttattaaa tattactgac tacattaata aagttataga aattaaaaat       240
     aaacctctct cggtcattct aacatcggtc acatcattta ctgaccatca tacataaca        299
//
ID   Gypsy-5_SiOr-I repbase;    DNA;    INV; 5650 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5650
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 342-342 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..1976
FT                 /product="Gypsy-5_SiOr-I_1p"
FT                 /translation="MDFKMNICYLKKEMLLHELRVRGVSVDDQSTVDKLRT
FT                 TLRPLLKMEKAGAFKSSPYNLEFDDEKIIIRTLLDEVNESISTVSSEENVQ
FT                 NKFLSIQSRLVHLLNRVNRIPDQVLNVNQQSEKTELLIDVLAAIDTLESTS
FT                 RQEPQLSNHFRDPDDDIPLHSSHVHNSTSQSVPFVNSVSPSKYLSLEKWNL
FT                 KFTGDIKKLSVHNFLERVNELRLARNITEKQLFDSAIDLFTGKALNWFRAN
FT                 NNRFQDWQGLSHLLRSHFEPPDYRARLFKEILERTQDTSETIIDYLSCMQA
FT                 LFRRYDGLSPDTQLDILCRNLSPFYTTQLPVVNTIEELERECLKLEVKKYR
FT                 AESYVPPSRKKQQFVEPDFAFVGVQNSQPSTSYNFIDEENQVSEISRGLQN
FT                 NSHNSSREITCWNCQKTGHINRNCPNPRKMHCYRCGTPDVITRTCPKCSSS
FT                 GNGPRGNR"
FT   CDS           1928..5155
FT                 /product="Gypsy-5_SiOr-I_2p"
FT                 /translation="NLSKVFQFGKRPSGKSLGRAISSQSTLLTAHANNTQD
FT                 FQNKILLDYIVSHAQGDQRPYLQISILGYSLLGLLDSGASRTLVGLPGYEI
FT                 LLSLGLKLIKQESSCTVANGEVCTSIGYIQTPITLMNKTKIIDILILPGLS
FT                 HKIILGIDFWKSMEIVPDLRQDVWHFSENTELAQICGVQSKDLLTPVEKTA
FT                 LDKLVEEKLSQMGSTLGCCRVAEHEIVLEPGTRPIKQRYYPVSPYKQKFID
FT                 DEVEEMLKLGVIERSNSPWSSPVCLARKKDGSFRFCIDFRKLNERTKKDAW
FT                 PIPYISTILDRLRNAQFISSVDIKSAFWQVPLNESSREYTAFTVPGRGLFQ
FT                 FRRMPFGLSNAPATWQRIVDTIFGPELEPNVMVYLDDIVILSSSFSEHLKL
FT                 LEIVFDRLAKAGLVVSLDKCNFCKPELRYLGYLVDAQGLRPDPEKVEAIVN
FT                 IPPPKNINEVRRFVGTASWYRRFVPNFSSLLAPILNLTKKNVKWNWTDDCQ
FT                 KSFTLLKECLVTAPILTGPDFEKPFCLQTDASSYGLGAVLTQEFEEGEKVI
FT                 CYLSRSLTKQEMKLSVTEKECLAVIWSVEKLRHYLDCVHFKVITDHASLLW
FT                 LHNVKDPQGRLARWQLRLQQFDFELIHRKGKFHIVPDFLSRSPVVPIDSVQ
FT                 ILDLPQFSNTTDKWYKNMLQNVQENPVKFPLWRVENNILYKFVKSRIPELS
FT                 SSTEWKMVVPKDKRKDIFHRCHDIPAAGHVGVFKTHAKIGQLYYWPKLKSD
FT                 VIRYVKCCVECAQNKVEQKRPAGLMGERPEITEPFQAISLDYIGPLPRSKK
FT                 GHCYILVISDYFSKAVFLYPCRSANSKSLVEHVEKFFLLFGTPMFLTCDNG
FT                 VQMKSKDFQDLCKKYKSRIFYTASYNPRANPVERQNRVVKTMLRTYVKQEN
FT                 HRTWDEHLQEIGCAIRTSPSETTKYSPYFVLFGKEHKLYGNFNKVDNKNVD
FT                 IDSYVKVRQEGFIKLYKQVQQRIESSRSNNAHRYNLRRRPAFFNPGDKVWR
FT                 RNKVLSDAACYYTAKLAPPYIGPFTIKRKCGSWSYELQDDLGCSKGIWHVQ
FT                 DLKQYTDPALANEVSDPDE"
XX
SQ   Sequence 5650 BP; 1650 A; 1043 C; 1055 G; 1902 T; 0 other;
     aattttatgg cgcccaacgt ggggcaattg atttaaatag ggcaattgca ttaaaaaggg        60
     caattctatt aatatctatt attattatat atctatagag acttagggcc aaataatttt       120
     atattcatct tgctggttaa tatttattca ttttttttct tttaatatta tcttgactcc       180
     tgattattat tgatactgat tattttcatt gatttatctt tgatttacct ttgatttacc       240
     tttgatattt ttacttacct tttgattgat atacgttttg gtatatagtt gatttgcctt       300
     ttctatttat ctttttctat tttctattta ccttgttttt tttacctggc ggattgcatt       360
     actaacttac ctgtgatttc gatatcgata tttttaattt gatatttact tactttttct       420
     ttgctttatt tttgttgaca agtattattt tgccatttta caccttaaac acttggttta       480
     ctttttggac tgaactttat ataattactg atataataaa tacttcgtat ttttacttta       540
     taattaacat cattattatt tttttaaatt ttacatttaa taattaaatt tgtactttat       600
     tgaaatttct tggcattatg gatttcaaaa tgaatatttg ttatctcaaa aaggaaatgt       660
     tacttcatga gcttagggtt cgtggtgtgt ctgttgatga tcaaagtact gtcgataaat       720
     tgagaactac cttgcgacct ttattaaaaa tggaaaaggc cggagctttc aaatcttctc       780
     cctataacct agagtttgat gatgaaaaga taattattcg tacgctatta gacgaggtta       840
     atgagtccat tagtacagta tcatcggaag agaacgtcca aaacaaattt ctgtccattc       900
     agtctagact agtccatctg cttaaccgtg taaatagaat acctgaccaa gttttgaacg       960
     tcaaccagca atctgagaag accgaacttt tgattgatgt tttagcagca atcgatactt      1020
     tagaatcaac gtctcgacaa gaacctcagt tgagcaatca ctttcgagat cctgatgatg      1080
     atataccatt acattcctca catgtacata attctactag tcaatctgtt ccttttgtaa      1140
     atagcgtctc cccttcgaaa tatctaagcc ttgagaaatg gaatttaaaa tttaccggcg      1200
     acattaaaaa actatcagtc cacaatttcc tagaaagagt gaatgagttg cgcttggctc      1260
     gtaatataac tgaaaaacaa ttatttgatt cggccatcga tttgttcacc ggaaaagctt      1320
     taaattggtt tagggcaaat aataataggt ttcaagattg gcagggttta agccacctat      1380
     tgcgcagtca ttttgagcca cctgactatc gtgctagact ctttaaagaa attttagaaa      1440
     gaacacagga tacctccgag actatcattg actatctttc atgtatgcag gcattgttta      1500
     gacgctatga tggtttatcc ccagatactc aactggatat tttgtgtagg aatttatccc      1560
     cattttatac cacgcaactt cctgttgtaa atacaattga agagcttgag agagaatgtc      1620
     ttaagctaga ggtgaagaag tatcgtgccg aaagctacgt acctccgtct aggaagaagc      1680
     aacaatttgt cgaaccggac tttgcttttg taggagtgca gaattcacag ccttctactt      1740
     cttataattt tattgatgaa gaaaaccaag tcagtgaaat ctctcgaggc ctacagaata      1800
     attctcataa ttcgtctagg gaaattactt gttggaattg ccagaagaca ggccacataa      1860
     atcgtaattg tcctaatccc agaaaaatgc attgctatcg ttgtggtaca ccagatgtga      1920
     taactagaac ctgtccaaag tgttccagtt cgggaaacgg ccctcgggga aatcgttagg      1980
     tcgtgctatt tcctctcaat ccacactatt aacggcccat gcaaataaca cccaagattt      2040
     tcaaaataaa attctccttg actatattgt ttcccatgcg caaggcgatc aacgtcctta      2100
     ccttcaaatt agtattttag gctattcact tttgggttta cttgattccg gtgcgagtcg      2160
     tacattagtt ggcttgcctg gttacgaaat tctgttgagt ctgggactga aattaattaa      2220
     gcaagaaagt tcatgtacag ttgcgaatgg tgaagtatgc actagtatag gttatattca      2280
     aacaccaata acattaatga ataaaactaa aattattgat attttgatac ttcctggatt      2340
     atctcacaaa attattcttg gcatagactt ttggaaatcg atggaaattg tacctgatct      2400
     caggcaagac gtttggcatt tttctgagaa cactgaactt gctcagattt gtggagtgca      2460
     gagtaaagac cttttaacgc ctgtagagaa aacagctttg gataaattgg tggaagagaa      2520
     attatctcag atgggatcta ctcttggttg ttgtagagtt gctgaacatg agatagttct      2580
     tgaaccagga accaggccaa taaaacagcg atattatcca gtgtctccat acaaacaaaa      2640
     atttattgac gacgaggtcg aagaaatgct taaacttgga gtgatagaga gatcgaatag      2700
     tccttggtct agtcctgtct gtcttgctcg gaagaaagat ggatctttca gattttgcat      2760
     cgattttcgc aagctgaatg aacgcacgaa gaaagacgcc tggcccattc cttatatttc      2820
     cacaatttta gatcggttac ggaatgccca atttattagc tcggttgata ttaaatccgc      2880
     tttttggcag gtaccgttga atgagagttc tcgtgagtac actgcattta cagtgcctgg      2940
     gagaggcttg ttccaatttc gcagaatgcc gtttggtcta tcaaatgcgc ctgctacttg      3000
     gcagcgtatt gttgatacaa tttttggtcc ggaacttgag ccaaatgtta tggtctacct      3060
     cgatgatatt gttattttat cttcatcttt ttccgaacac ctgaaacttt tggaaattgt      3120
     ttttgaccgc cttgccaaag ctggtcttgt cgtgtcttta gataagtgca atttttgtaa      3180
     accagaattg cgttatctag gttatctagt agatgcccaa ggacttcgtc cagatccaga      3240
     aaaagtagag gccattgtca atattcctcc acccaagaat attaatgaag ttcgtcgatt      3300
     cgtgggtaca gcatcgtggt ataggcgttt cgttccaaat ttttcctcgc ttcttgcacc      3360
     tatcctcaac ctcacgaaga agaatgttaa atggaattgg actgatgatt gtcagaaatc      3420
     attcacacta ctcaaagaat gtttagttac tgcccctatt ttaacaggac ccgattttga      3480
     gaagcccttt tgtttacaga ccgatgcgtc gtcatacgga cttggagctg ttcttaccca      3540
     agaatttgag gagggtgaaa aggtcatatg ttatctttcc cgttcactta ccaagcagga      3600
     aatgaaatta tctgtaacag aaaaggaatg tttggctgta atatggtcag tagaaaaact      3660
     gagacactat ttggattgcg tacattttaa ggtaatcaca gaccatgcct ctttgttgtg      3720
     gctgcataat gtaaaggacc ctcaaggtag attagctcgc tggcagttgc gtctgcaaca      3780
     atttgatttc gaacttatcc atcggaaggg aaaattccat attgttcctg attttctttc      3840
     gagatcccct gttgttccta tcgattctgt ccagatttta gatttacccc aattttctaa      3900
     cacgaccgat aaatggtata agaatatgtt acaaaatgtt caagaaaatc ctgtaaaatt      3960
     tcctttatgg cgtgtggaaa ataatatttt atataagttt gtaaaatcgc gtataccaga      4020
     gttatcttcg tcaacggaat ggaagatggt agttccgaaa gataaaagaa aggacatatt      4080
     ccacaggtgt cacgatattc ctgctgcagg acatgttggt gttttcaaga ctcatgctaa      4140
     gattggtcag ctttactatt ggccaaaatt aaaatcagat gttattcgtt acgtgaaatg      4200
     ttgtgtagaa tgtgctcaaa ataaggttga acaaaagcgt cccgcaggtc taatgggaga      4260
     gcgtccagaa ataaccgaac cgtttcaagc catcagcctt gattatatag gacccctgcc      4320
     tcgttccaag aagggacatt gttacatttt agtaatttcg gattatttca gtaaagccgt      4380
     cttcttgtat ccttgtagat cggctaattc taagagtttg gtagagcacg tcgagaaatt      4440
     tttcttactt tttggcacac ctatgttcct gacgtgtgat aacggcgtgc aaatgaaatc      4500
     caaagatttc caggatttgt gtaagaaata taagtcacga atattttaca ccgcaagtta      4560
     taatccccgc gctaatcctg ttgaacgtca aaatagagta gtgaaaacga tgcttcgaac      4620
     atatgttaaa caggaaaatc acaggacgtg ggatgaacat ctacaggaaa ttggttgtgc      4680
     tatccgaact tcgccaagtg agactacaaa atacagtcca tatttcgtgt tatttggtaa      4740
     ggaacataaa ttgtatggca attttaataa agtagataat aagaatgttg atatagattc      4800
     gtatgtgaag gtccgccagg aaggttttat taagttatat aaacaagtcc aacaaagaat      4860
     cgaatcctca agatctaaca atgctcacag gtataattta cgtcgccgtc cagcattttt      4920
     caacccaggt gacaaggttt ggcgcagaaa taaagttctt tccgatgctg cttgctatta      4980
     tactgcaaaa ttagcgccac cgtacatagg accgttcacc atcaaacgca aatgcggttc      5040
     ttggtcgtat gaactccaag acgacctagg ttgctcaaaa ggaatctggc atgtacaaga      5100
     tttaaaacag tacaccgacc cagcacttgc caatgaagtt tcagatcctg atgagtaact      5160
     gttttattct attttttttt ctgaggtagc gagtaggtat actcccagtg gtggtccgac      5220
     ctacttcagg gatgcgcccc tgcccacgcg agccgtgatt tgctctcaat cctattttcc      5280
     tgaggggaat catgtcctaa cctttaatcc tatccaatgc caaaatcctt gtcctacctc      5340
     ctgttccatt tagaatttag agtccctaga attagttatt attagattag ttttttttag      5400
     ttacagtacc tttaaccctt atcagttagt acctttaaag tcatatagtt tgtaattttt      5460
     atttcttttc gttcctagtt acttataatt atcaatttct ttctcattta tatcttactt      5520
     cagttcactt ttctatttgc tttcaataat tttcttcgct ttctcttagt atacatttag      5580
     tagttcttgt ttatcatcgt cggaaaattt tctccttaaa tttccctcct attccaagga      5640
     gagggggggt                                                             5650
//
ID   Gypsy-5_SiOr-LTR repbase;    DNA;    INV; 2535 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-2535
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 330-330 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2535 BP; 692 A; 366 C; 345 G; 1132 T; 0 other;
     tgtaacgtgc caaaatttca ctaaactatt ttatttcttt tctttaataa tttaacgcta        60
     attgatatta ttattagtct gaaatatcga tcagttcaat tcagtaaacc aagaataaat       120
     aaatcgtact tacatgttaa caaaagtaat tattccatcc ttatttttaa ctaaacatat       180
     ttcacactta ataacatttt ttttgcagca caaaactagt ttgatttaat acaatttaat       240
     atttatttta gccgaaatag ataaaataat tcttttccgc cgttaattct gtttatatac       300
     taaatacgta ggttagaaat ttttgaattg aactgtcaaa tatttattta tatttttatt       360
     aacattaact attaggcaac ccaaaatata ctttaataaa ttgattatat atttttgtat       420
     tttatttaat caacagtaat tattgagcct attgtcactt agttaaactc attaaattta       480
     tgttgctcta ttttaatttt taggtagaat tttctaagca taattgtctt aaaaatatcg       540
     tatcgatccg gcaagtgagt catgcgcaat atctctagat tgttgttatt tattaatttt       600
     tgaatgtttt gataagcaaa tttctatata actttcatta atctcgttaa ctttatttat       660
     tctattaatt atataaatta ttgatattaa ctttattttc ctttaatata taactttttc       720
     ttcatgtctt tattcagctc atggttggca atccatattt tatcaagggc tcgtgttttt       780
     atctggctat ttctttgttg caaaaaaggt tttcgttttt cttggaacta ccttggtttg       840
     gtcactttat gttcagctag tgtgaggtac agaggcctct cggtcatttt tgtcaagttt       900
     ttgattttta cccttgtggg gattttcgag tgtgcctcaa aaattactgc agcatcctat       960
     cttacctttt gtttttttgg acggtgctac ggtttaccgg tgacgggatt ttcacctcaa      1020
     aaagctgacg tgggtcaacc aagcagcccg cctttttttt attgagcacc ccattccatc      1080
     caggggaaga aataatatta atcacctgag gattcgtaga aaaccctgag ttagcaggta      1140
     aagcctattt tttaaattaa tacatttctt tccacttttt tttcttcttt aaaaaaaaac      1200
     tatctttttt atggtatctc gtactatgga gaaactataa tattatttct ccgtagggtt      1260
     tttttttttt gtcggagccg aagagttttt ttgtctggac cgaagaagtt tttttgtctg      1320
     ggccgaagaa gtttttcttc tgtgttgaag acttctctct gagccagttt ttttgttgga      1380
     gcagtttttt ttcgctgtat ccattttact tttctggagg agttgacagt cgacggttga      1440
     cagttgacag ccgacggtgt ctgcccaaga ttgatttgat ttagaagatt ttcaactatt      1500
     tggtatcgta caattcaatt tttatttttt tccctatctt acgatttgaa tttcattggt      1560
     gcgtacgaat actgaacgta gataattttt tttaacatta taatttaatt agaataaatt      1620
     ttcacatact taattctgtt gataaaataa tatttcattt ttttttcctt taattttttt      1680
     tgtaaattta atacagctga cacagtttct ttttgtctct atttaaaatt taaatctatt      1740
     catttttttt ttcgatatct aaatttcttg aactgatgaa ttcataatta ttagttgatt      1800
     attttgattt atttatttaa taattatatt attaattatt attattagtg aattggttta      1860
     gtattattta tttgatttat taatttgttg attaatttga tatattagct gaatttagtt      1920
     gcgctgatat atacatatat attttatttt gtaaatctta cgtgatcacg aaaggtacct      1980
     aggtatttac gtaattttgc tacttgcgta ttgtgagata tatttttctt ggtgcacaat      2040
     tttttttatt gatttattta atttactatt tgctatttgg tattttctat ttactgtttc      2100
     ctatattttc cttttatatt tcaatagagg gtactgaaac taatcagttt gcattatttt      2160
     ttttatattt cctttggccc tatgtctaca taattctcta agatcttgac tttttttgtt      2220
     tatttattta tcttttttta tttatgtatt tgtggaactt gtaaggccct aaatacacct      2280
     ttgggggatt tctgactttt ttttccgtct aaagtcagtg gcgctcttaa cccgccccta      2340
     ctctccgaat tttctgagct agggcataaa tttgttcgcg actagacccc tgcaaattcc      2400
     ataaatattt atttttctta atcgctaact taataatatt tttttttctt cttcgtattt      2460
     tttttacttc ttttctaaat tttttttttt tttttttaat ttaaaagagc cgagctaagg      2520
     ccaaaacgcg tgaca                                                       2535
//
ID   Gypsy-5_SpEx-I repbase;    DNA;    INV; 5513 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5513
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4078-4078 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1703
FT                 /product="Gypsy-5_SpEx-I_1p"
FT                 /translation="MANDLISILNELEKIKVSLRKLGPSKRELNVNYIKRK
FT                 FLDAEKLYSENKTLCKLILEEKLFTKEFTEIFFLDIISRIEDTFSKIKTYC
FT                 VSSEQTTKMEKFNLKTAASLVPVMDSTEESVEKIIDSVELYDCCLTETSCK
FT                 KLLASFVLKTRLTKTAKLKLKRDYDSCTDLIKDMKLFLLTKKSSNSLMTQL
FT                 NSIRQNDLSIADFGSKLEELFTDLTISQAKSNNEAFEILRPINEELAVKKF
FT                 ADGLRNRRLSTIIAARNYTDLKDAVRAALDEELSQPQPTTSNSILNIRGKS
FT                 HTLQLRGRGNYHFRSQSGFRGNFSQNRGNNNSYANRNRTFQYNNFAFRGRQ
FT                 SRGFRTRPNRGRVVYNSRGQQQINVAKTDTTKSEGTEGSTDNQENNNNQFF
FT                 RSQQS"
FT   CDS           1606..5361
FT                 /product="Gypsy-5_SpEx-I_2p"
FT                 /translation="TLQKRIQLNLRVRKVRLIIRKIIIISFFDPNSPNILT
FT                 CDVSSANYVTLYLNENRCSWLLDTGATLSAVSSSVLGDQLHVYEDRITING
FT                 IGGKCSSKGYVYLTLRTVDNFTFQHKFYVFEKLPCKSEGILGQDFLDQFSS
FT                 ITFDLEKSLLKLTVGDKKIFLPLYRIPQISNSSLHIPARCESIHYIKLDSD
FT                 ITQDCVILPKQLHTDVLLASLIVRPQNKIIPIRILNSSDKNITLPIFKPEL
FT                 DLLSNYEICAFEKCESGSQRAKLLLSLLKLDHLDSTERQTIESICVKYADV
FT                 FQLPWEKLTTTPICEQSIALKPDSKPIYTKPYRIPFSQKTEVEKQIKKMLQ
FT                 DDIIEKSQSEWSSPILLVPKKTDGENKSWRLVVDYRKLNSTIQDDKFPLPN
FT                 ITEILDSLSGAVYYTHLDLSQSYYQVRLTSKDDSRKITAFTTNTGQYQMKR
FT                 LPMGLKISPSAFSRVMTVAMSGLTFDKCIIYCDDLVVFGRNISQHNKNLID
FT                 VLERLRLVNLKLNPNKCQFLKTEMLYLGHTISKDGVLPDPDKIRVIKNYPL
FT                 PKNSDEVRRFVAFSNYYRKFIKNFAEITEPLNKLCRKNVPFVWTENCDQSF
FT                 QFLKQALSSPPILQYPDFSPNSEFILQTDASGIAISAILCNKDLRPVAYAS
FT                 RPLNKSERNYPTIQKELLAIVWGVKYFRPYLFGKSFTIMTDHKPLVYLFGI
FT                 KDPSSRLLKFRLALDEYDYKIVYVQGKNNPAADALSRIVITSEDLKAMNEQ
FT                 IMTVMTRAQKRRMEESDRIDIGSPNVCTDERPAHPQVVEILRIPNNSVEML
FT                 LIEGEKLRKMRDKRLIDVEWKCFAFNSKCKKIYINLDYKNNFTRDVFVLYL
FT                 SDFCKDINVDEICIIKNESNEMFIKDVINEVKNNENYLGPRICILRGVTRI
FT                 DKNEDKEFILNDFHLLPTSGHAGVRRMINNIKKCFYWPGLEKDVQNYVRKC
FT                 QSCQKMKHSRHTVEPLEITTTATTAFERIFLDIVGPLDRDLDGNVYILTLQ
FT                 CDLSKFVEAYPLPNKETITVAKALVNNFILRFGIPKCIVTDRGQEFLSSTM
FT                 ADVCKLLEIEKLHSTSYHHQTLGSIENTHKHLGAFLRIQCDKHPEAWSYWL
FT                 PYWCFSYNNTVHISTKYAPYELVFGKHCVIPSRLSNRVEPLYNIDNYCLEL
FT                 RYRLQVAQKDARENLLSVKQNRKSVYDQKVNSVKYNPSDLLLVKSETGTKL
FT                 QVLYDGPYLVLEDIGPNVVILKNNKREIIHKNRTKPFVTNIK"
XX
SQ   Sequence 5513 BP; 1921 A; 871 C; 1027 G; 1694 T; 0 other;
     tggcgaccct gccagtgcgc gttaaataat aactatgggg aaacaatgct cgaaatgtgc        60
     ctgtgagaac aaagaagtta tcataaatca acacggtggt ggagaagcaa gtgcgactgc       120
     tgatgcgtcc acgcacttac agaccaacaa tattatattt tctgttttcc tggcaatcgt       180
     tgctgcgttt attctgtaca tactattcaa gcagtacaga aactgtcact tggctatggt       240
     gcagaaccag ctcagagagg atgcattccg gcggatcagg atgaggctgt ctggagcacg       300
     gaggagtcag aacgagagag acggtgatca ggaagcagga cctcgggaca tgtaatgact       360
     tcgacttcgg ttcgcatcaa ttttttttct ctttctattg tttctttagt agtaattaag       420
     tcacatgttc gactacgtat atattttagt tttaaatgtg ttaagttaga aatgtaataa       480
     gcatctaaac attttacagt tatcagatgg ctaatgattt aatatctatc ttaaacgaac       540
     ttgaaaagat aaaggtatct ttaagaaagt tgggtcccag taagcgggaa ctgaatgtta       600
     attacattaa aagaaaattt ttagatgcag aaaaattata tagtgaaaat aaaactcttt       660
     gtaagttaat tttagaggaa aagttgttta ctaaagaatt tacggagata tttttcttag       720
     atataataag taggatagaa gatacattta gcaaaataaa aacttattgt gtaagttccg       780
     aacagactac taaaatggag aaatttaatt tgaaaactgc cgctagttta gtgccggtta       840
     tggacagtac agaggaaagc gttgaaaaaa ttatcgatag cgtagaacta tatgattgtt       900
     gtctcacgga gaccagttgc aaaaaattac ttgcttcttt tgtattaaaa actaggttaa       960
     ctaaaaccgc caaacttaaa cttaagcgag attacgattc ttgcacggat ttgattaagg      1020
     atatgaagtt gtttttatta acaaagaaat cttctaattc tttaatgact caactaaata      1080
     gtatacgcca aaatgacttg tcaattgcgg attttggttc taagctcgaa gaactcttta      1140
     ctgatttaac tatatcgcaa gctaaatcga ataatgaagc gtttgaaatt ttacgaccta      1200
     ttaatgagga actggcagtt aagaaatttg ccgacgggtt acgtaacagg aggttaagca      1260
     ctattattgc agcacgcaat tacaccgacc tgaaggacgc ggtgcgagca gccctggacg      1320
     aggagttatc tcaaccccaa ccaacgacct caaactcgat cctaaatatt cgaggtaagt      1380
     cacatacatt acaattgcgt ggccggggaa attatcattt tagatcccaa tcgggttttc      1440
     gcggtaattt cagccagaat agaggtaaca ataattctta tgctaacagg aatcgtacat      1500
     ttcagtacaa taatttcgca tttcgtggaa gacaatctcg tggttttcgc acgcgaccaa      1560
     atcgcggtcg agttgtttac aatagtagag gccaacaaca aataaacgtt gcaaaaacgg      1620
     atacaactaa atctgagggt acggaaggtt cgactgataa tcaggaaaat aataataatc      1680
     agttttttcg atcccaacag tcctaatatt ttaacatgtg acgtaagcag tgctaattat      1740
     gtaacattat atttaaacga gaacaggtgt tcgtggcttt tagatacggg tgcgacctta      1800
     tcagccgtga gtagctctgt attaggagat caattacatg tttatgaaga taggattact      1860
     ataaacggga taggcggaaa gtgttcttca aaaggttatg tttatcttac tttaagaact      1920
     gttgacaatt ttactttcca acataagttt tatgtatttg aaaaattacc ttgtaagtca      1980
     gaaggtattt tgggacaaga tttcttagat caatttagtt caattacttt tgacttagaa      2040
     aaatctttat taaaactcac tgttggtgac aaaaaaatat ttttgccgtt atatagaata      2100
     cctcaaataa gtaattcatc gttacatata ccagctcgtt gcgaatctat tcattatata      2160
     aaattagatt cagatataac acaagactgt gttatactac caaaacaatt acatacagat      2220
     gtattattgg caagcttaat agttagacct caaaataaaa ttattcctat tcgaatactt      2280
     aattctagcg ataaaaatat tactttacct atttttaaac cagagttaga tttgctaagc      2340
     aactatgaaa tttgcgcatt tgagaaatgt gagtccggtt cccagcgcgc taagttattg      2400
     ttatcgttat tgaaattgga tcatttagat tctacggaaa gacaaacaat agaatccatt      2460
     tgtgtaaagt acgccgatgt attccaatta ccatgggaaa aattaactac tacaccgata      2520
     tgtgaacagt ctatcgcctt gaaacctgat tctaaaccta tttatactaa accttatcgt      2580
     atacctttta gtcagaaaac tgaagttgaa aagcaaatca aaaaaatgtt acaagatgat      2640
     attattgaaa aatcgcaaag tgaatggtct agtcctattc ttttagttcc caaaaagaca      2700
     gatggtgaga acaaaagttg gaggttggtt gtggattatc gtaagctaaa ttcaactata      2760
     caggacgata agtttccact tccaaatatt accgaaatat tggactcgct atcaggtgct      2820
     gtttactaca cacatttaga tttatctcaa agttattatc aggtgcgact aacgtcaaaa      2880
     gatgatagtc gtaaaattac agcatttacg actaatactg gccaatacca aatgaaaaga      2940
     ctacctatgg gtttgaaaat aagccctagt gctttttcac gggtcatgac tgttgcaatg      3000
     tccggcctta cgtttgataa atgtattatt tattgcgatg accttgttgt ttttggacgt      3060
     aatatatcac aacataataa aaacttaatt gatgtccttg agaggttaag attagtcaat      3120
     ttgaaattaa accccaacaa gtgtcaattt ttaaaaacgg aaatgttata tctcggtcat      3180
     acgatatcta aggatggtgt tttgccagat cctgataaaa ttagagtaat taaaaattat      3240
     cctttgccaa aaaattctga cgaagttagg cgatttgtag catttagtaa ttactataga      3300
     aagttcatta aaaattttgc ggagataaca gagccactaa ataaactttg tcggaagaat      3360
     gtaccctttg tatggactga aaattgtgat cagtcatttc aatttctaaa acaagcttta      3420
     tcatcgccgc ctatacttca atatccagac ttttcaccta acagcgaatt tattttgcaa      3480
     actgacgcct caggtattgc gataagtgca attctttgta ataaagattt gcgcccagta      3540
     gcttacgcaa gtcgaccatt aaataaatcg gaacgtaatt accctactat ccaaaaggaa      3600
     cttctagcta tcgtttgggg tgtaaaatac tttcgcccat atttgtttgg aaaatcattt      3660
     acgataatga cagaccacaa accgttagta tatttatttg gaattaaaga tcctagtagt      3720
     agacttttaa aatttcgatt ggctcttgat gaatacgatt acaagatagt ttatgtgcaa      3780
     ggtaaaaata atcctgcagc ggacgcgtta tctcgaatag taattacgtc agaggatttg      3840
     aaagcgatga atgaacaaat tatgactgtt atgacgcgag cacaaaagag gagaatggaa      3900
     gaaagtgata ggattgatat tggatccccc aatgtatgca cagacgagcg gcctgcgcac      3960
     ccgcaagtcg tggagatatt gaggattcca aataactctg tggaaatgtt attaatagaa      4020
     ggagaaaagt taagaaaaat gagagataaa cgactaattg atgttgaatg gaaatgtttt      4080
     gcatttaatt caaaatgtaa gaaaatatac ataaacctcg attacaaaaa caatttcacg      4140
     cgagacgtat ttgtgctgta tttgagtgat ttttgtaagg atataaacgt cgacgaaata      4200
     tgtattatta aaaatgaaag taatgaaatg tttataaaag acgtcataaa tgaagttaaa      4260
     aataatgaaa attacctagg ccctaggata tgcattttaa gaggtgttac gagaattgat      4320
     aagaatgaag ataaggagtt tattttaaac gattttcatc tactgcccac tagcggtcac      4380
     gcaggggtac gtagaatgat aaacaatata aaaaaatgct tttactggcc aggactagag      4440
     aaagatgtcc aaaactatgt tcgaaaatgc cagagctgtc aaaaaatgaa gcactcaagg      4500
     catacagttg agccattgga aattacaact acggccacaa ctgcctttga aagaattttc      4560
     ttagacatag ttggtccttt agatagagac ttagacggga atgtttacat tctcacatta      4620
     cagtgcgatt taagtaaatt cgtagaggct tatcctttac ctaataaaga aactattact      4680
     gtagctaagg ccctagttaa taattttatt ttaaggttcg gtataccaaa atgcattgtc      4740
     actgatagag gtcaagaatt tttatcgtca actatggcag atgtttgtaa attactcgaa      4800
     atcgaaaaat tacatagcac ttcataccat catcaaactt taggctcgat tgaaaatacg      4860
     cataaacatt taggagcttt tcttcgcatt cagtgtgata agcacccgga ggcatggagc      4920
     tactggctcc cctactggtg tttttcgtac aataatactg tccatatatc cactaaatat      4980
     gcgccgtatg aattagtatt tggaaaacat tgtgtaattc ctagtagact aagtaataga      5040
     gttgaaccat tgtataacat agataattac tgtttagaat taaggtatag attacaagtt      5100
     gcgcaaaaag acgctcgtga aaatttgtta tcagtgaaac aaaacagaaa aagtgtgtac      5160
     gaccaaaaag tgaactcagt gaaatataat ccatccgatt tattattagt gaaaagtgaa      5220
     accgggacta agttacaagt actgtatgat ggaccttatt tagtattaga ggatattgga      5280
     ccaaatgttg ttatattgaa aaacaataaa cgagaaatta ttcataagaa tagaactaag      5340
     ccgtttgtaa ctaatattaa gtagtgtata gaatttctgc gcgcagtaca ttcttttcag      5400
     tagattgtta gttttattat taaactacat ggttttgttt attctatata gttataaaaa      5460
     aaaaaacatt ttgtttacca aaaaattttt ttttttcaaa tcaacccctg taa             5513
//
ID   Gypsy-5_SpEx-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-146
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4134-4134 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 146 BP; 44 A; 20 C; 34 G; 48 T; 0 other;
     tgtggtgtga gtatatgcat gttagtgtgt aagtatgtgt aagattatag taagcatcat        60
     tattgtggaa agtactcagt aataaatgga tcgtgacgct aaacagtagt ttgtcatttg       120
     acacccctta gtcccgagat actaca                                            146
//
ID   Gypsy-5_SpFr-I repbase;    DNA;    INV; 3005 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3005
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1846-1846 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           53..2596
FT                 /product="Gypsy-5_SpFr-I_1p"
FT                 /note="zinc finger, retropepsin, and ribonuclease
FT                 H."
FT                 /translation="MPTTRRGEALRQQQGDEGNVTLTEEEIVAERGHADEA
FT                 ASAGSRPTEPAPHFTQEFLSTLIETITRAQVEANRSLVNTLMGSGGDFRAS
FT                 TPVGPPPFSNATGGGTAVAAPPCSEANFVKCTARFDGTSPDAEVLEAFLDA
FT                 VEIYKECAAVSDEHALRGLPMLLEGEAAVWWRGVKASVTTWADATARLRAT
FT                 YGVAQPAHLILREIFAREQQEERAETFICRVRALIARLPYTLDQTLQTDIC
FT                 YGLLHRRVVKRVPRDSVRGLDDLLHKARIAEDTYKASKVNSDKVRSNNNST
FT                 EISVAPTTDRVLTQSSSATTGATSSRCNNRSRPRCSFCKLFGHVSDECRNR
FT                 EKANSKNNINTTPREVRCYGCGKQGVVRSKCDVCVNTTSKSDDKISFNKVD
FT                 VDFCMNNVEVSNNSRSYTSRVDTDSCVSITSACLSTRDDHPMVNISVAGRR
FT                 GVAVVDTGATHSIASPLLHRILVNSGVRFTETRRFVRLADGTQGWRNLLSA
FT                 ETDVIVVGRRVRCQFLVLPGRNTRTLLGVDFLARAGMVIDVARRTWSFSDS
FT                 PERRYDFVSNYTLGSNNSVDAXLLHTASADDPAPRPREGKFTPVRRRTPNA
FT                 FIEDRAPRAARDVPASKGAARRRNKVSSRRKGGIKVDPDKAAVVANLAAPQ
FT                 NVKQLECFLRMSCKYRRFIGNYAGIARPLTDLLKKSSAWQWGTEQQEAYER
FT                 IKSLLVSAPILRQADASKPFVLCTDSSAYCIGAVLMQGEGHDEQPIEYASR
FT                 LLTSAERNYSTTEREALAVVWALGKFRGYVKSAKVIVRTDYQPLGWLMGQR
FT                 SPSGRLARWAPMLREFDLSIEYTPPSLTGSCRYHFATRKCRRPGRV"
XX
SQ   Sequence 3005 BP; 714 A; 768 C; 880 G; 642 T; 1 other;
     ctggcgccca actagtgggc cgaaccgtta cgaccgttac ataagcgtga agatgccgac        60
     aacgaggaga ggggaagccc tccgtcaaca acagggagat gaggggaacg tcactctcac       120
     tgaagaggag atcgtcgccg agcgcggcca cgcggacgaa gccgcgagcg ccggctcgag       180
     gccgacagaa cctgctcccc acttcaccca agagtttcta tccacgctga tcgaaacgat       240
     tacgcgtgcg caggtggagg ctaacagaag tctcgttaac acgctgatgg gatccggcgg       300
     cgacttcaga gcttccaccc cagtcgggcc tcctccattt tccaacgcga ccggcggtgg       360
     taccgccgtc gcagcgccgc cgtgcagcga ggctaacttc gtgaagtgca cggcgagatt       420
     cgacgggacc tccccggacg ctgaggtcct ggaagcattc ctggacgccg tcgagatcta       480
     caaggagtgc gcagcagtga gcgacgaaca cgccctgcgt gggctaccca tgctcctgga       540
     gggcgaagcc gccgtgtggt ggcgcggcgt aaaagcgtcg gtgactacat gggcggacgc       600
     gaccgcgcgc ctccgtgcga cctatggcgt cgcgcagccc gcgcacctca tcctgcgcga       660
     gatcttcgcg agggaacagc aggaagaacg tgcagagaca tttatatgta gagtgcgcgc       720
     gttaatcgct aggttgcctt atactctaga tcagacgtta caaacagaca tttgttacgg       780
     cttattacat agacgcgtag tgaaacgtgt gccgcgagat agtgttcgtg ggttagacga       840
     ccttttacat aaggctagga tcgcggagga tacctacaaa gcgtctaaag taaattccga       900
     taaagtgcgc agtaataata attcgaccga aatatcggtg gcacctacta ccgaccgtgt       960
     tctcacgcaa tcgagttccg cgaccacggg cgcgacttcg tcacgttgca acaacagaag      1020
     tagaccgcgt tgtagttttt gtaagctttt tgggcatgtt agcgacgagt gtcgtaatcg      1080
     cgagaaggct aatagcaaaa ataatattaa tacaacacct agggaggtac gttgttatgg      1140
     gtgtggcaag cagggagtcg tgaggtcgaa atgtgatgtt tgcgtgaaca caacgtcgaa      1200
     gtccgacgac aaaatatctt tcaacaaagt tgatgtagat ttttgtatga ataacgtcga      1260
     ggttagtaat aattctcgta gttacactag tagggttgat accgattcgt gtgtaagcat      1320
     tacgagtgca tgtctaagta cgcgcgacga tcacccgatg gtgaatatta gtgtcgcggg      1380
     ccgtaggggc gtggccgttg tagataccgg cgccacgcat agcatagcga gcccgctctt      1440
     acaccgaata ttagttaact cgggagttcg atttaccgaa acgagacgtt tcgtgcgcct      1500
     agccgacggc acacaaggat ggaggaactt gctgtcagcc gagacagatg ttatagttgt      1560
     aggccgtcga gtaagatgcc agttcctagt gttgcctggt aggaatacta ggactctgtt      1620
     aggtgtagat ttcttagccc gggccggcat ggtaatagac gtcgcccgac gtacatggtc      1680
     gttctcggac agtccggaac gacgttatga ttttgtgtct aattacacct taggttcgaa      1740
     caatagtgtc gacgcckgcc tattgcacac cgcttctgcc gatgacccag caccgcgacc      1800
     gcgtgaaggt aagtttaccc ccgtgcggcg gcgtacgccc aatgcgttca ttgaagaccg      1860
     cgcgccgcga gccgcgcgcg atgtacccgc gtcgaagggc gctgcgcgtc gtcgtaataa      1920
     agtaagttca cgtcgaaaag gcgggatcaa ggtcgatcca gacaaggctg cagttgtcgc      1980
     caacctggct gctccgcaga acgtgaagca actagagtgt ttcttgcgca tgtcgtgtaa      2040
     gtatcgacgc tttattggta attatgcagg aatcgcgaga cccctcactg acctcctgaa      2100
     gaagtcgagt gcctggcaat ggggcaccga acaacaggag gcgtatgagc gcatcaagtc      2160
     tctgctcgtt tccgctccta ttctccgcca ggcggacgcg tcaaagccat ttgtcctttg      2220
     cactgatagc agcgcctatt gtattggggc tgttctcatg cagggggagg gccatgacga      2280
     acagccaatc gagtacgcga gtcgactcct cactagtgcc gagaggaatt actccacgac      2340
     tgagcgagag gctctcgccg tcgtgtgggc actcggtaag ttccgcgggt atgtgaaatc      2400
     cgcgaaggtc attgttagga ctgactacca gcccttaggg tggctgatgg gtcagaggtc      2460
     acctagcggt agactggcca gatgggcccc gatgttgcga gagttcgatc tcagcattga      2520
     gtacacaccc ccgtcgctca caggtagttg caggtaccat ttcgcgaccc gtaagtgcag      2580
     gcgaccagga cgagtgtgac ttatgcatga tcagtatcga taggccagag agaagcagca      2640
     gtgttcgcag cagtcagccg atggacccca gaggtacgta tgagtatcga ggacatggag      2700
     tccgacgaac cctctagggg gagaccacgg tctgaccgct gatacgaata cactttctct      2760
     gacgatacta ggcaggttac tctcttataa ttatgttaga taggtaaagt tgtcagctct      2820
     acaactcacg gtctggagag cgtacggact cgggcgaacg tagggcaata tcacgcttcg      2880
     cacctcacgc cttccgcagg ccatgtagag ttacccgttc atgagaaacg cgagcgtggc      2940
     agatcgcgct attagtctag actagcccaa cagtgagggc actttgttag gctagagggg      3000
     gagga                                                                  3005
//
ID   Gypsy-5_SpFr-LTR repbase;    DNA;    INV; 437 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-437
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1839-1839 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 437 BP; 109 A; 104 C; 101 G; 123 T; 0 other;
     tgtagcgcgg ggattaaaaa aagtaacgta acgtagtcta tggtgtgact actctgtggt        60
     tgcaacgtca cgcggtcgcc caatgagagc gcgtgaacga ccacctctcc cgaccgccgc       120
     aacctcgcgc gccagcgcag ccattgcgag cggtgagaga gagagcgccc cgaccaccga       180
     cgcgtacgga cgtgttgtgc aatcctccgc ggctctatat cacgccatca ttgtttaatc       240
     tagaactttc gattatccgc cattttgtgt aacaagtatt tctttattaa gtttttttag       300
     tctcgtgttc gttaatgtta agaattgtgt aaatagtaat aaaaagtgat tgactgtaaa       360
     gtgccgcttt atttaaacca ccactgagtc tggaagttgc cttttaaact ggctcccaac       420
     tttagtggct tattaca                                                      437
//
ID   Gypsy-5_TCa-I repbase;    DNA;    INV; 3961 BP.
XX
AC   ChLG7;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_TCa_;
KW   Gypsy-5_TCa-LTR; Gypsy-5_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3961
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG7; Positions 16910859 16914819.
XX
CC   Positions [1459-1980] - Reverse transcriptase
CC   Positions [2995-3531] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1444..3909
FT                 /product="Gypsy-5_TCa-I_1p"
FT                 /translation="MMALGICRPSNSPWASPLHMVPKKDSNWRPVGDYRRL
FT                 NAVTKEDRYPIPHLHDFAHLLAGKTIFSTVDLVRAYHQIPVEASSIPKTAI
FT                 TTPFGLFEFTRMQFGLRNAAQSFQRFIHEVLNGLDFCFPYLDDILIASTSE
FT                 REHTDHLRKVFERLLKYGLTINPEKCSFGNSKVNFLGYEVSADGTKPLTDR
FT                 VKVILNYPLPKTSKDARRFLGTINFYRRFVPHAAAHQAPIHNLVKNSKKND
FT                 KTPLSWTPESKAAFELCKHDLAQATLLVHPTTTDTISLTVDASDFAMRAVL
FT                 EQNQGGSWKPLSFFSKKLTPAQQKYSTYDRELLAIYSAVKAFQHFLEGRHF
FT                 VIYTDHKPLVYAFTQKSDKATPRQARHLDYISQFTTVINHISGKSNVVADT
FT                 LSRISEIDTPTPIDYQTLRESQDVDPELQTLLAQPDSTALKLKLFTVPGSE
FT                 KQIYCDDSNRRIRPFIPKTSRYELFKHFHGMAHPGIKATTKLLTDRFVWPG
FT                 INKDVSRWTRACINCQRSKVQRHTQPPITEIGTSDERFAVINIDLIGPLPP
FT                 SNGFTYCLTCIDRYTSWTEAIPLTDITAESVAKALYSGWISRFGTPLKIIT
FT                 DQGRQFESSLFASLSTLMGFRRARCTPYHPATNGKIERWHRTLKTAIKAHA
FT                 SPNWTEHLPTVLLGLRTVIRDDTPVSASEMVYGSTIRLPGEFFQDSTNTID
FT                 PATFVGQLKANIANVRPASAPHHDNRQIFVPQNLDTCTHVFVRRDAVRKPF
FT                 DPPYDGPCKVLNRTEKYFTVDLNNKSTNISLSRLKPAFLLNDNPIRHDHTY
FT                 ANWAITPEKTDLKKTVRFKL"
XX
SQ   Sequence 3961 BP; 1155 A; 1108 C; 757 G; 941 T; 0 other;
     ttggtgaccc cgcacaacac gcgcatcgaa aacaccacgc aacagtgcac gttacaacat        60
     gcccgataac ccaccagatt tcaacgccgc tgtccaggtc gagatcgaga gggttactgt       120
     taaaccgcca cccttttgga aaggtgatcc caagctgtgg tttatccaac ttgaagccca       180
     attcaacctc ggcaagataa caagcgatac aactaagtat cactacgtgg tcagtgctat       240
     cgacacatca gttcttcagc aaattgccgc tttcgtgacc aatcctcccg ctgtcaacca       300
     atatgaaggt atcaaacaac ggcttatttc tacattttcg gattctcagg aacgccaatt       360
     gcgtaaacta ctgtcggaaa tagacttagg cgacaagaaa ccttcgcaat tgcttaacga       420
     aatgaagcgt ctgggtgatt cggctgtatc cgacgaatta ctgaaaactt tgtggttaca       480
     aagattgccg acccacgtcc aatccgtgct cgcaaccagc tccgacccga ttcagaacct       540
     tgcgcaaatg gcagacaaaa tcgtggagat acaacacatg tcctcagttt gtacagttac       600
     gaccccaacc gaagatatgt ctgcagctat cctgcaactc actaaggaag tcgcagcatt       660
     aaaggctgcc tacaatactg aaattaagcc gcgacgatca cgatcacgac cacagacgcc       720
     agaccgttca agcagggact cttgttggta ccaccgaaca tttggcaata aagcaaagaa       780
     gtgtatcact ccctgcaact tcaacaagtc ggaaaactcc acgccgcgcc agtaacggcg       840
     gcaagcgacg cggcgtgcgc cagccgcact ataaatgcaa tccatgccag tcgacgcctc       900
     accataaccg atccaaccac cggtatttcg tttttgattg actctggttc ggatatttca       960
     atcatcccca agaaagcacg acagtcaaca gtaagtgacc tcgtacttta cgctgccaat      1020
     ggcaccgcca ttcaaaccta cggttacgag agacttacca ttactttggg attacgacgt      1080
     cgattaattt ggaacttcat catcgctgat accaaacgag caataattgg cgccgattta      1140
     ttacattatt tcgatctttt aatcgatatt agacgggcca gactaattga tagcacgaca      1200
     ggaatctcca gcgcaggcac atgcatttcc gcctcgcaca ctgcagtgtt gtcagtttca      1260
     ccgaacgctc ggtatcgcga cctgatcagg gaatttccag ctctgacaac ttttcacaat      1320
     gtcgaaccaa tccttccaca tgcgacccag catctaatcg aaaccaccgg acctccagta      1380
     gcttcaaaac cacggagact ccctccagac aaactacaaa tagccaaaag agagttcgaa      1440
     catatgatgg cgctagggat ttgcagaccc tccaatagtc cctgggcaag tcccctccat      1500
     atggtcccta aaaaggacag caactggcgt ccggtaggtg actatagacg actcaacgcg      1560
     gtcactaaag aggatcgtta cccaattcct catttacatg acttcgctca cctgcttgct      1620
     ggtaagacca ttttttcaac cgttgacctc gttagagctt accaccagat cccggtcgaa      1680
     gcgagctcta ttccgaaaac cgccattacc acaccttttg gccttttcga atttacaaga      1740
     atgcaatttg gtcttcgtaa cgccgctcaa tcctttcaaa gattcatcca cgaagtcttg      1800
     aatggtctcg acttttgctt cccctacctg gatgacattc tcatcgcctc cactagcgaa      1860
     agggaacaca ctgaccacct tcgcaaagtc tttgaaagat tattaaagta tggccttact      1920
     attaatcccg aaaaatgttc ttttggaaat tccaaagtga atttcctggg gtacgaagtt      1980
     tcagcagatg gcaccaagcc cttaaccgac cgagtcaagg tcattttgaa ctacccgcta      2040
     ccaaagacat ccaaagacgc tagaaggttc ctaggtacaa ttaactttta ccgacgtttt      2100
     gtacctcatg cagccgctca tcaagccccg atacacaatc tagtcaaaaa cagcaaaaag      2160
     aacgataaaa caccgctatc ttggaccccc gaatcgaaag cagcattcga gctgtgtaaa      2220
     cacgacctcg ctcaagcgac gctcttagta caccctacaa ctactgatac tatttcgctc      2280
     acagtcgacg cttctgactt cgcaatgagg gcagtgctcg aacaaaatca aggaggtagt      2340
     tggaaaccct taagtttctt ttcgaaaaaa ttgacaccgg cccaacagaa atatagcacg      2400
     tatgataggg aactgttggc aatttattcc gcggtcaaag cgttccaaca ctttcttgaa      2460
     ggccgtcatt tcgtaattta cacagatcac aaaccccttg tgtatgcttt cacgcaaaaa      2520
     tctgacaagg caactccgcg acaagcacga catctcgact acataagcca gtttacaacc      2580
     gtcatcaacc acatttctgg caaatccaat gtagttgccg acaccttgtc cagaatcagc      2640
     gaaattgaca caccaactcc tatcgattac cagacactac gcgaatcaca agacgtagat      2700
     cccgaactgc aaacacttct ggcacaaccc gattctacag cactgaaact gaaattgttc      2760
     accgtccctg gttcagagaa acaaatttat tgcgacgatt ctaaccgcag aatccgtccg      2820
     ttcatcccca aaacctcacg gtatgaactt ttcaagcact ttcatggtat ggctcacccc      2880
     ggtatcaaag ccaccacaaa actcctcact gacagatttg tctggcctgg tattaacaag      2940
     gacgtcagcc gctggactag agcttgcata aactgccaga gatccaaagt gcagaggcat      3000
     acacaaccac cgatcacaga aattggtact tctgacgaac gattcgcagt tatcaacata      3060
     gatttgattg gaccattacc accttcaaac ggctttacct attgcctaac ttgtatcgac      3120
     cgctacactt cttggaccga agccattccg ctaaccgata tcacagccga atccgttgct      3180
     aaagccctgt attccggctg gatctcccgg tttggtacgc cgctgaaaat tatcacggat      3240
     caaggcaggc aattcgaaag ttcgctattt gcttcacttt ccacattaat gggttttcgc      3300
     cgcgcgaggt gcacaccgta ccatccagcc accaacggca aaattgaacg ttggcataga      3360
     acactaaaga ctgccattaa agcccacgct tcaccaaact ggacggaaca tttacccacc      3420
     gttctcctcg ggctgaggac agtcatccgc gatgacaccc cagtctcagc ttcggaaatg      3480
     gtttatgggt caaccattcg gctccccggt gaattttttc aagattcaac caacaccatc      3540
     gaccctgcaa ctttcgtggg acaactcaaa gcaaatatcg caaatgttcg accagcgtca      3600
     gctccacatc atgacaacag gcagatattt gttcctcaaa atcttgacac ctgcactcac      3660
     gtttttgtcc gaagagacgc agtcaggaaa ccttttgacc caccttatga tggaccctgt      3720
     aaagttctca atcgaaccga aaagtatttt acggttgatc tcaacaacaa gtcaaccaac      3780
     atttctttgt ccagactgaa accagctttt ctgctcaacg acaaccccat tcggcacgac      3840
     catacttatg ccaattgggc tattacaccc gaaaagactg atttgaagaa gactgtcaga      3900
     ttcaaattat aaatagtttt ttctattact catcgtggct ccaccactgg caggggagta      3960
     c                                                                      3961
//
ID   Gypsy-5_TCa-LTR repbase;    DNA;    INV; 245 BP.
XX
AC   ChLG7;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_TCa_;
KW   Gypsy-5_TCa-I; Gypsy-5_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-245
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; ChLG7; Positions 16910614 16910858.
XX
SQ   Sequence 245 BP; 64 A; 67 C; 53 G; 61 T; 0 other;
     tgtggcggca ctggaaccac acaggcgatt cacggttgat cgtaaccgta gccacaacac        60
     ttcccatgac aagtgacagc ccgccagaac gacactagcg acaccacctc tcttggcgtc       120
     gagcgtcact cggtcacacg tgcataattt tagttttgta accgtttcaa tttgttgcgt       180
     taataaagga gtttatgtaa agtgagtttc gttggtctcc tcgcgacaca ccatataaac       240
     ccaca                                                                   245
//
ID   Gypsy-5_TrNi-I repbase;    DNA;    INV; 5734 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5734
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 210-210 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..4756
FT                 /product="Gypsy-5_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDSDDEGTPRRRDKSTRKRRYRRKSHEDSQDRGLRKE
FT                 SLDKGRRKRRHRTNSISSGEDDGEQGRESVELHRGHRSASEHRRHSGKKHR
FT                 RRSHSRRRRRSRSKRRSRRPRCSSTSSEENHVSRSKFRDSTQSLLAELFKS
FT                 ISNNRPEGNKFPMLGNVIPEFDPMVKGQTIGMWLNKVEECARLYKWGEDQI
FT                 IHYALPKLSGVAKTWYQALPSMSFSWSEWRVKLTESFPSSDDYAELLTEML
FT                 AKRAKYNDSLELYYYQKINLLNRCEIKGKRAVDCLLYGLDDRSLRLGAKAT
FT                 KCDEPEQVLKYFQSIKQQSRESDNRLKNNFDKRTNVGSSDKQTLNTKLNRS
FT                 NDSTKAITCYNCNETGHYSFNCNKKILKCTICNKLGHLTTDCSKLPTNNIS
FT                 KSETNKEKSVMALNAISSTSNDKYFISLNVNDQPFQGYIDLGSQCTLLRRS
FT                 VANILGIQWSSEQLPTMRGIGNNVVLPLGVAVVKIQIQGIEESISCYVVED
FT                 SIIKYDVLIGHSFTEIPGITITKTSDSLIFSRTLPTKLRLSLLFDVTISPR
FT                 DTCVIRISSDINFSGTVYVNGSLRGYPGGEYYLMPGDYNLINGTGALLIQN
FT                 MSNSVLKLEQGVLITRAMCTDMCLNINMLDFDDPKISDTVNYDKNLSDSEV
FT                 QQLKNTLQKYNECFSSNLSDLGYTNVDKIDIELIDTKPVVYRPYRLSYPER
FT                 ELVKSMVREMIDADIICESNSAYASPVLLVKKKTGDKRLCVDYRALNSKTK
FT                 KEHFPLPLIDDQLDRLAGNSLFISLDLASGYYQLAVGEGSQDKTAFVTPDG
FT                 QYQFKRMPFGLTNAPSVFQRAMNRILAKIDYTLIFMDDILIPARTFDEGLQ
FT                 RLDEVLRVFREANLTLKLEKCFFFYKQIDFLGFEVSGSGIRPGSRKITAVS
FT                 NFPTPKNVHDVRRFIGLASFFRRFVKNFSLIARPLTDLLKKQFVWKWTDEH
FT                 SQAFETLKSKLVERPILALYDAKLETELHTDASKHGIAGILMQRGLDGLMR
FT                 PVAFYSRKTTADEQKLHSFDLETLAVVASLNRFRIYLLGLKFKIITDCNAL
FT                 RYTMTKRDLVPRIGRWWVQLQEYDCEIEYRAGSKMSHVDALSRAPVDEPTT
FT                 SDTTHVIDVLSVDTSDWIATVQSGDDEIKRIKEILSGKDTAFIVDVHKNYQ
FT                 LKGNYVYRVVDDGLRWVVPKTVRWQLLKMNHDDIGHFGYEKTLKRLKNSYW
FT                 FPKMRRFTKKYVNACLECAYHKTPGGPKEGVLHPIPKPDIPFHTLHADHLG
FT                 PFVRSRRGNMYLLVIVDAFTKFISINPVRDTKTATTIRVFKSYFSYFGAPT
FT                 RLITDRGTSFTSTKFKQFVGDAGIKHILNAVATPRANGQVERFNRTISDAL
FT                 STKCHDKNDNIWDEYVNDVQLGLNTTVNKTTGKSPSELLFGYKVKSMSENI
FT                 LSDAIDKTVDRVSGDNLTDLRNESVRKIQQEQVIAKDRYDKHRKSATKYNE
FT                 GDLIRLERTTFDKDRIGKSKKLMAKFHGPYRIVKTLPNDRFLVEDTPLTRK
FT                 GRNKYENIVSIDKIHPWLNFKEFDSENDSDKVNTDCESDK"
XX
SQ   Sequence 5734 BP; 1879 A; 991 C; 1274 G; 1590 T; 0 other;
     gttcagaagt gggataacca aaacccacta attatttccg caccaagcgc atcctgaaca        60
     atctatctcg ttgagggtga actgcaccat ggacagcgat gatgaaggta cgcctcgtag       120
     acgtgacaaa tcaacccgca aaagacgcta tcgtcgtaaa tctcatgaag actctcaaga       180
     tcgaggccta agaaaggaat cgttggacaa aggacgacgg aagagacgtc acaggaccaa       240
     ctccatttcg agcggagagg acgatggtga gcaaggcaga gagagtgtgg agctacatcg       300
     gggacaccgg tctgcatcgg agcatcgaag acattcggga aagaagcatc ggcgccgttc       360
     gcactctaga cgtcgtcgtc gttcgagatc gaagcgccgg agccgtagac ctcgctgttc       420
     gagtacatca tcggaggaga atcacgtgag tcgttccaag tttagagata gtactcaatc       480
     attattagcg gaattattta aatcgatatc caataatcga ccagaaggca ataagttccc       540
     tatgttaggt aacgttatac cagagtttga tcccatggtt aaaggccaga ccatcggtat       600
     gtggcttaac aaggttgaag aatgtgctcg cttatataaa tggggtgaag atcaaataat       660
     tcattacgcg ttaccgaaac tgagtggggt ggccaaaaca tggtatcaag ctctgccgtc       720
     gatgtcgttt tcgtggtcag aatggagggt taaattaacg gaatcgttcc cgtcaagtga       780
     tgattacgca gaacttttaa cggagatgtt agctaagagg gcgaaatata acgattcgtt       840
     agaactgtac tactaccaaa aaattaacct attaaatcgt tgcgagataa aaggtaaacg       900
     cgcagtggat tgtttgctgt acggcttgga tgatcgtagc ttgagattgg gcgctaaggc       960
     aacaaaatgt gatgaaccgg aacaggtctt aaaatacttc cagtctatta aacaacaatc      1020
     gcgggagtca gataataggt tgaaaaacaa ttttgataaa aggacaaatg taggtagttc      1080
     agataaacaa acattgaaca ctaaattaaa tagatcgaat gacagtacta aagctattac      1140
     ctgctataat tgtaacgaga cagggcatta cagtttcaat tgtaataaga aaattttgaa      1200
     atgtactatc tgcaataaat taggacactt aactactgat tgttcgaaac tacccactaa      1260
     taatatttca aaatcagaaa ctaacaagga aaaatcggtt atggcactga atgcaatatc      1320
     tagcacaagt aatgataaat atttcattag tttgaatgta aatgaccaac cttttcaagg      1380
     atatattgat ttgggtagtc agtgtacatt attgcgacgt agcgtagcga atattttagg      1440
     catacaatgg tcgtcagagc aactacctac aatgcgcgga atcggtaata atgttgtctt      1500
     accactcgga gtagcggtag tcaaaatcca aattcaaggc atagaggaat cgattagttg      1560
     ttatgttgtt gaagatagta tcattaagta tgacgtgttg attggtcata gttttactga      1620
     gataccaggt ataactatca cgaaaactag cgattctctg attttcagcc gcactttgcc      1680
     tacaaaattg agactttcac ttctcttcga cgttacaatt tccccgcgcg atacttgcgt      1740
     aataagaatt agtagtgaca taaatttttc gggtactgta tatgttaatg gttcattacg      1800
     gggttacccg ggaggtgagt attacctaat gccgggtgac tataacctaa taaatggaac      1860
     tggtgctctg ctcatacaaa atatgtcaaa tagcgtatta aaattagagc aaggggtatt      1920
     aattacacgt gctatgtgta cagatatgtg cttaaacatt aatatgttag atttcgatga      1980
     ccccaaaata agtgatactg taaactatga taaaaattta agtgatagtg aagttcagca      2040
     gttgaaaaat acattacaga agtataacga gtgtttctcg agtaatttat cggatttggg      2100
     ctatacgaat gttgacaaaa tagatattga gttaatcgat acgaaaccgg ttgtttatag      2160
     accgtatcgg ttatcatatc cagaaaggga actagtgaaa tcaatggtaa gggaaatgat      2220
     cgatgccgac attatttgtg aatcgaactc cgcatatgct agccccgtcc tccttgttaa      2280
     aaagaagact ggggataaac gcctttgcgt tgactaccgt gcgttaaata gtaaaacaaa      2340
     aaaagaacat tttccccttc cattgattga tgaccaattg gatcgcttag ctggaaattc      2400
     actattcata agtctagacc tagcatctgg gtactatcag ttagccgtag gagaaggctc      2460
     ccaggataaa acggcctttg taactcctga tggccaatac caattcaaaa gaatgccatt      2520
     cggattgaca aatgccccgt cggtgtttca aagggcgatg aacagaattc tagctaaaat      2580
     tgactatacg ttaatattta tggacgatat tttaattccc gcgcgcacat tcgatgaggg      2640
     tctgcagaga ttagatgagg tgttaagagt tttccgcgag gcaaacctta ctcttaaact      2700
     agaaaaatgc ttcttctttt ataaacagat agatttcctg ggttttgaag ttagtggttc      2760
     aggtataagg ccaggttcgc gtaaaataac tgctgtgtca aattttccga ctcctaagaa      2820
     tgtccatgac gtcaggcgct ttatcgggtt agcaagtttc ttcaggcgtt ttgttaagaa      2880
     cttttctctg atagcacgac ctttgacgga tctattaaaa aagcagtttg tgtggaaatg      2940
     gactgatgaa cactcacaag cattcgaaac gttgaaaagt aaattagtag agagacctat      3000
     actcgcgttg tatgatgcca aattagaaac ggagttacac acagacgctt cgaaacatgg      3060
     aattgcaggc atacttatgc aacgtggcct tgatggactc atgagaccag tggcattcta      3120
     tagtaggaaa accacagctg acgaacaaaa attacactca tttgatttag agacacttgc      3180
     ggtagtggcc tccttaaata gatttcgtat ttatctatta ggtttgaagt ttaaaataat      3240
     aacagattgt aacgcacttc ggtacactat gacaaaaagg gatctagttc ctagaatagg      3300
     tcggtggtgg gtgcaattgc aggagtacga ctgcgaaata gaataccgcg caggttcaaa      3360
     aatgtcacat gttgatgccc tcagtcgtgc tcctgttgat gagcctacca cttcggatac      3420
     cacacacgtt atcgacgttc tctctgtaga cacgtctgat tggattgcga ccgttcaaag      3480
     cggtgatgat gagatcaaaa gaattaagga aatattatcg ggcaaggaca ctgcattcat      3540
     cgttgacgtt cataaaaatt accagttaaa aggtaattat gtatacagag tagttgatga      3600
     tggattgcga tgggtagttc caaaaaccgt aagatggcaa ctgttaaaaa tgaatcacga      3660
     tgacatcggt cacttcggtt atgagaaaac attgaaacga cttaaaaatt catattggtt      3720
     cccaaaaatg agacgattta ccaaaaagta cgtaaacgca tgcttggaat gcgcgtatca      3780
     taaaacaccg ggaggaccta aagaaggagt gttgcacccc attccaaaac ctgatatccc      3840
     attccacacg ttacatgcgg atcatctggg cccgtttgtt cgttcgcgga ggggcaatat      3900
     gtatctctta gtaatcgtag acgcatttac caagtttatt agtattaacc ctgtccgaga      3960
     tacaaaaact gctactacta tcagagtatt taagagctat tttagttatt ttggggcacc      4020
     aactcgattg ataacggaca gaggtacgtc tttcacgagt accaaattca aacaatttgt      4080
     aggtgatgcc ggtattaaac acatcttgaa cgctgtggcg actccgcgag cgaacggaca      4140
     ggtcgaaaga ttcaatcgaa ccatatcgga tgctcttagt actaagtgtc acgataagaa      4200
     tgataatatt tgggatgagt atgtaaatga tgtacaatta gggctaaata cgacggttaa      4260
     caaaacaacg ggtaaaagtc cctccgaatt actgtttggt tataaggtta aaagtatgtc      4320
     tgagaatata ttaagtgatg caatcgataa aaccgtagac cgagttagcg gcgataatct      4380
     aacggatctg aggaatgaat cggttcgtaa aattcagcaa gaacaagtga tagctaaaga      4440
     tcgttatgat aagcatagga aatcggcaac taagtacaat gaaggtgatc ttattaggtt      4500
     agaaaggaca acatttgaca aggataggat aggaaagtct aagaaactca tggccaaatt      4560
     tcatggacct tataggattg tgaaaacatt acccaacgat agatttctag tagaagacac      4620
     ccctcttaca agaaaaggga gaaataaata tgaaaacatc gtctctattg ataaaataca      4680
     cccctggtta aattttaagg aatttgatag cgaaaacgac agcgacaaag taaatacgga      4740
     ttgtgaaagc gataaatgat atttaaaaat tgtaagatag gtacttgtac gtgtatgtta      4800
     ttatgatttt gatgttggat cgcatatgat tttgtatgta tgcatatcag cataggtcac      4860
     gagtatcaat gcactgaatt gacgacgcag atcgtgacag actacactga catgagtcat      4920
     gagcgtcaat gaaaattgca aagatgacgc agatcttggc agatcagtct gtgtgggttg      4980
     cgagcgttag gttcagcaca gatgacgcag atcgcgacag actgtactgg tatgggttac      5040
     gagcgtcagt gctgctagca cagatgacgc agatcgtgac agactgtatc agtataggtt      5100
     gcgagcgtca gcgcttatgc acagataacg cagattgcga cagactgtac tggtatgggt      5160
     tgcgagcgtc agtgctgctt gcatagatga cgcagatcgt gacagactgt actggtatag      5220
     gttgcaagcg ttagtgcccc tgcacagatg atacgactat aatgttaagt ccgttacgtg      5280
     atttgtaatg cgatcgagag gttatgaagt gtgtagtata tattatatac ataaatgttt      5340
     gtatctgatt aagaatgatt agcagattac agataagact agaagttatt agacaactaa      5400
     ggttgttatg tgttttgaaa tctatttttg attttgttcc gttgtaaata attaatcaca      5460
     attgcttgag aatataatat atcacatata ggtaatcaac agtttaacga ttgcatcctc      5520
     ttatacaatc tatagaatat ctttattatt aacttatata aaaaaaaaaa aacacattta      5580
     taagtgcgtt gttactttgt aaccaaaatt gaataaaaga gatttgaatt taaaaatgtg      5640
     attaagatga tatggtgttt gtagtattat gattattatt gtatcattat aagttgccat      5700
     gtgtgaggac ccacactgaa aaggatggcc gagc                                  5734
//
ID   Gypsy-5_TrNi-LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-269
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 250-250 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 269 BP; 80 A; 48 C; 47 G; 94 T; 0 other;
     tgtaagaatc gattataagc atctatgttc tttgtactaa atatccttaa tattgagtga        60
     atgttggatt gacatcgatg tcattcttgg cattagtgac gtttttgaca agctgtcact       120
     ccaacgattc attcattcgc ggattcagtt gtaacggaca ttattctttt accacgtgtt       180
     gaagtgatcg gacgattgtg aaacaaaata aatccaataa gttcaagata atcctacgtt       240
     atttcctaga acctgaactg accctttta                                         269
//
ID   Gypsy-5_TrVa-I repbase;    DNA;    INV; 4925 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4925
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 251-251 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           342..4694
FT                 /product="Gypsy-5_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MANNSLASSPCVPMSFKGDLSNNWKEWHQQFEVFLLA
FT                 AKLDKEDNQRKNALLLHYMGNESFQIFNSFQLDLATTDHNELVKKFKDHFL
FT                 PKVNVTLERISFFNRKQKLNESLEDYLTVLKNLSQNCKFGTLKDSLVKDIF
FT                 IGNLNSENAHIQEKLIYEDKTSLSDVFELAKSLQLSKVRTEQMNPEVNAVN
FT                 VSNHHRRSSENPPFNQYGPSTSRNHSSNFASNRSRSKASRSTFNKRGNHHR
FT                 SGNRQSSHSRSQSNNRSHSSSRSQSRSRFQSSSNNQPTQMISVCAACGLRY
FT                 HKYQCPALNKKCFKCGQKNHFPKFCPNQSVHNVNVQSDDSENDVSGDETLF
FT                 VGKLDKMLVKSPKSNLADKWFITISVNKRPIKAQVDTGAQANLLSLDNFLK
FT                 LGLNKSIIRKSFTKIKTVTKSDVDIIGECVLNFKFSQKLYDCRFHITSFQC
FT                 DTILGLKMADQLNLINIINNVNSESLSKTEAICEEFKSTFKGIGCIKDHEV
FT                 TLEIDKNVKPVCDPNRKVPVKIRSELRKHLEELVNQKIIKRVRKHTSWTNS
FT                 IVIVRKKNKKIRLCLDPRNLNKAIKRPTHCIPDIEFIRSELRDSKYFTSLD
FT                 LNCGFWNFKLSKESSDLTTFNTPFGRYKFLRLAFGINAASEICQANLIELF
FT                 KDIPNLIIYIDDFLIHAKTVQQHDETLRKVLQKAKDLGIKFNLPKCKFFQT
FT                 HINFLGEIYSENKIVIDPARVQAIVELDAPTCVKELQRFLGMINYIGSFLP
FT                 NLSSRTENLRKLLKKHVLWNWTPVHENEFKELKTLISNAPVLTNYDVNLPV
FT                 TLSVDASKDALGAVILQNAKPVAFASSTLTSQQQLWGQIDKELLAIYFGCS
FT                 KFHQYLFGQQIAVESDHKPLETLFKKQYKDIPIRLQRLMLKLERYDIQVNW
FT                 VPGKKLAVADFLSRSPLKNECFNPEELQSDMECQIALLDAHLSSFISPAKL
FT                 EEFKLATQNDEISNILSHYYFNGWPETKHRTNKLVRSYFKIRNQIFVKDDL
FT                 LFNLNCLIVPKSLRQNMLKIIHEGHLGFNSCVRRAKEVLYWPFMNHDIKNI
FT                 VASCSTCIKFSNANPKQPIKPHPIPSLPWEKVGADLFEFNNEHFLCVVDYY
FT                 SKFPEVISLKSATSAKFVINSLKSIFSRHGIPVTIFSDNGPPFNSDEFQNF
FT                 TTLWGISHVTSSPHYPKSNGMVERTIQSIKKLMKKCKENNEDFHIALLNFR
FT                 NTPKVDSPSPNQLLMSRVTKSKLPSSYELLKPKLVDTNKYNQTLKSRQQKM
FT                 TQSNGILKSFKELKNDDPVYFKKTPKDVWQQATILKKCSEPDSYVLEASNG
FT                 RTYRRNRLHIKSIPKKVSFSIDPENNFSHVTNRHESLVNIPEINNATDMQK
FT                 SSHYLSFPLIPSATNTDNNAINCTTPKIAELTPEIINLEESGDEDYSTPST
FT                 SFVNPSHTVGTPLIRGRGLLKRISSRTINPPKRYSPN"
XX
SQ   Sequence 4925 BP; 1680 A; 887 C; 762 G; 1596 T; 0 other;
     tggtgtcagg tgtggtgcga gttgtgaaca ttcaataatt cacaactttg caagtttttc        60
     ttttcgcaaa tatgtgatcg cgtcgcgtca tcctcgttgt tcgtacacgc gatgtcgtga       120
     cacctcgtgt tacccgatta tcggaaaaat gatcgcgaaa aagtttaatt caattctcga       180
     ttcatttcgc acgtaaaacc cacccacctt taattcctgt tacttccttt cattctgtga       240
     taaattttta acctaatttt actcctttcc ctacctgatc aaaatttcct atcactggca       300
     taacctaagt ttcccgtata agtcaagtta gctatcagaa aatggctaat aattcacttg       360
     catcgtcgcc gtgtgttcct atgagcttta aaggagattt gtcaaataat tggaaagaat       420
     ggcatcagca gtttgaagtt ttcttgctgg ctgcaaaact ggataaggaa gataaccaac       480
     ggaagaatgc attactactc cattatatgg gtaatgaatc gtttcagata tttaattcct       540
     ttcaactaga tctggctaca actgatcaca atgagctagt caagaaattc aaggatcact       600
     ttcttccaaa agtcaacgta actctggagc gcattagttt cttcaatcga aaacagaaac       660
     tgaatgaatc tctcgaagac tacctcacag ttttgaaaaa tctaagtcaa aattgcaaat       720
     ttggtacatt gaaagatagc ctcgtgaaag atatttttat tggcaatctt aattctgaaa       780
     atgctcacat tcaagaaaag ttaatctatg aagataaaac atctttatct gatgtatttg       840
     aactggctaa aagtcttcag ctgagtaaag ttcgcaccga acaaatgaat cctgaagtta       900
     atgcagtaaa tgttagtaat caccacagac gaagcagcga aaatccaccg ttcaatcaat       960
     atggtccttc cacctctcgt aaccattcat caaacttcgc atccaatcgt tctagatcta      1020
     aagcaagtcg ctcaacattt aacaaacgtg gcaaccatca cagatctggt aatcgtcaat      1080
     cttcacacag tagatcgcaa tcgaacaata gatcacattc ttcttccaga agtcaatcca      1140
     ggtctcgttt ccaatcatcc tccaacaatc agccaactca aatgatctcg gtatgtgcag      1200
     cttgtggttt acgttatcat aaatatcaat gtcctgctct taacaaaaaa tgttttaaat      1260
     gtggtcagaa aaatcatttt ccaaaattct gtccaaatca atctgttcat aatgtcaatg      1320
     ttcaaagtga tgacagtgaa aatgatgtca gtggtgatga aacccttttt gtaggtaaat      1380
     tggataaaat gttagtcaaa tctccaaaat ccaatttagc agataaatgg ttcataacta      1440
     tttctgtgaa taaacgtccc atcaaagctc aggtagacac tggtgctcaa gcgaatttat      1500
     tgtctcttga taattttttg aaactaggtc ttaacaagtc cattattcgt aaaagtttta      1560
     ccaaaattaa aacagtcact aaatctgatg ttgatataat tggtgagtgt gttcttaatt      1620
     ttaaattttc ccaaaaattg tatgattgta ggtttcatat tactagcttt caatgtgata      1680
     ctatcttagg tttaaagatg gctgatcaat taaacttgat taatatcatt aataatgtaa      1740
     acagtgagtc tctcagtaaa actgaagcaa tttgtgaaga gttcaaaagt acttttaaag      1800
     gcatcggatg tatcaaggat catgaagtaa ctctagagat agataaaaac gtcaaaccag      1860
     tttgtgatcc caacagaaag gtacctgtaa aaatcagaag tgaactccgt aaacaccttg      1920
     aagagttagt taaccaaaaa atcatcaaaa gagtacgtaa gcacacttca tggaccaatt      1980
     ctattgtcat agttaggaag aaaaataaga aaatacgttt atgtcttgat cctaggaatc      2040
     tgaataaagc catcaaaagg cccactcact gtattcctga tattgaattt ataaggtcag      2100
     aactgcgtga ttccaagtat tttacgtctc ttgacctcaa ctgtggtttc tggaatttta      2160
     aattaagtaa agaaagttca gatctcacta cttttaatac gccgtttggt cggtataagt      2220
     ttttaagatt agcttttggc atcaatgccg catcagaaat ttgccaagct aatttaattg      2280
     agttatttaa agatattcct aatctcatca tttatattga tgactttctc attcatgcta      2340
     aaaccgtcca gcagcatgat gaaactctaa ggaaagtgct ccaaaaagct aaagatttag      2400
     gaattaaatt taatcttcca aagtgcaaat tctttcaaac tcacatcaat tttttaggtg      2460
     aaatctattc agaaaacaaa attgttattg atcctgccag agtacaagct attgtagaac      2520
     ttgatgctcc tacttgtgtt aaagaattgc aaagatttct tggaatgata aattacattg      2580
     gttctttttt acctaactta agctcgagaa cagaaaactt acgtaaactt ttaaaaaaac      2640
     atgttttatg gaactggact cctgttcatg aaaatgaatt taaagagcta aaaactctta      2700
     tttctaatgc tcctgtttta acaaattacg atgtcaatct tcctgtcaca ttatcagtgg      2760
     acgcctctaa agatgcgtta ggagctgtaa ttcttcaaaa tgctaaaccc gtagcctttg      2820
     cgtcatccac tctcacgtct caacaacaat tatggggaca aatagataaa gaacttcttg      2880
     ccatttactt tggatgttca aaattccatc aatatctatt tggtcaacaa attgcagttg      2940
     aaagtgatca taagccactt gaaaccttat tcaaaaaaca gtataaggac atacccataa      3000
     gattacaaag gcttatgctt aaattagaac gttatgatat tcaagtaaat tgggtccctg      3060
     gtaaaaagct agctgtagct gattttttaa gtaggtctcc tctaaaaaat gaatgtttca      3120
     accctgaaga attgcaatct gatatggaat gtcaaatagc tttattagat gctcatttat      3180
     cgtcgtttat ctctcctgcc aaactagaag aatttaagtt agctactcaa aatgatgaaa      3240
     tttcaaacat tttatctcat tactatttta atggttggcc tgaaaccaaa cacagaacca      3300
     acaaattagt caggtcctat tttaaaatca gaaatcaaat ttttgtgaaa gatgatcttt      3360
     tatttaattt gaactgttta atagtcccta agtcattacg tcaaaacatg ttgaaaataa      3420
     tacatgaagg tcatttagga ttcaattctt gtgttcgtag agcgaaagaa gtgctttact      3480
     ggccttttat gaatcatgac ataaaaaaca ttgttgcaag ttgttcaacg tgtatcaaat      3540
     tttcaaatgc aaaccctaaa caacccatta aacctcatcc tattccatcg ttgccgtggg      3600
     aaaaagtagg tgcagattta tttgaattta ataatgaaca ttttctttgt gtcgtagatt      3660
     attactctaa gtttcctgag gtaatttcgc ttaaaagtgc gacaagtgca aaatttgtaa      3720
     ttaacagcct taaatcaatt ttctctagac atggcattcc tgttactatt ttttctgata      3780
     acggtcctcc gttcaattct gatgagttcc aaaattttac caccttatgg ggtatctctc      3840
     atgtaacatc atcccctcat tatcctaaat ctaacggcat ggttgagaga actattcagt      3900
     ccattaaaaa actcatgaaa aaatgtaaag aaaataatga agattttcac attgctttgt      3960
     tgaactttcg taacacacct aaagttgatt ctccatcacc taatcaattg ctcatgtcca      4020
     gagtcacaaa atcaaaatta ccttccagtt atgaactatt aaaacccaaa cttgttgata      4080
     caaataagta taatcaaact ttaaagtcta ggcaacagaa aatgactcaa agtaatggta      4140
     ttttaaaatc attcaaagaa ttaaaaaatg atgatcctgt ttacttcaag aaaacaccta      4200
     aagatgtttg gcaacaagcc acaattttaa aaaaatgctc ggaacccgat tcttatgtat      4260
     tagaagcttc caatggtaga acgtacaggc gtaatcgtct tcatatcaaa tctattccga      4320
     aaaaagtgtc atttagtatt gatcctgaaa ataattttag tcatgttaca aatcgtcacg      4380
     aatcgttagt gaatatacct gaaattaata acgcaacaga tatgcaaaaa tcttctcatt      4440
     atcttagctt ccctctgatt ccttctgcaa ccaatactga taataatgca atcaattgta      4500
     caacacctaa aattgctgaa ttaacacctg aaattatcaa tttagaagaa tcaggtgatg      4560
     aagattatag tactccttca acatcttttg ttaatccatc gcatactgtt ggtactccgt      4620
     tgattagagg tagaggtctc ttaaaacgca tttcaagtag aacgatcaat cctccaaaaa      4680
     ggtattctcc taattaaatt tgtaagcact aactgtgata ttattggata gttttctaag      4740
     cgtgttagtt ttgtaagcgt gctagttttg taagtgttat ttattcttaa aattttaatg      4800
     tgattttata ttgtttctat ttgttttaat taatgttaaa cgtgccatgt atgtcactct      4860
     cttaattatc ttaaattgtt tctttgcttc caaaaaaaaa aaaaaaaaaa aaaaaaaaag      4920
     gaagt                                                                  4925
//
ID   Gypsy-5_TrVa-LTR repbase;    DNA;    INV; 170 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-5_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-170
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 234-234 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 170 BP; 53 A; 25 C; 29 G; 63 T; 0 other;
     tgttggtaac gttgtatgag ttacctatgg tgaaggttgg caacactaat atcaccactc        60
     agttacagaa taaagtctga tctcacgata ccatgtcgtt gttattttat tattttatta       120
     attagattta gttgagtatt aacaaaagaa cctcaagtct tttgttaaca                  170
//
ID   Gypsy-600_AA-I repbase;    DNA;    INV; 7755 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-600_AA_;
KW   Gypsy-600_AA-LTR; Ty3_gypsy_Ele178; Gypsy-600_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7755
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3273-3776] - Reverse transcriptase
CC   Positions [4845-5324] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           892..2229
FT                 /product="Gypsy-600_AA-I_1p"
FT                 /translation="MLTEPEGALGGLRSLSPVSHGGNYTEKASSNNNDEKT
FT                 TGTKPKQVLVPVDNNPSVVTVSRVEWEEMQRTLAELTAKLAEVNVSKSTAN
FT                 TINCGIQTGMIERPIPPTNSVQRHSLPNKYGHVSGPPQPPNSRRTPTEHLD
FT                 RDRRQLPMQQRPSNDFRCVEQETSSDDEPDRQPWAPRQHYADFRVPRETAG
FT                 FDQQAGPYDMYSRNRNLGFRGSEVDDWTCSDYDDRYRNRRYTRNFNNSYQS
FT                 RIEKWKLRFSGDQRSVSIENFLYKAKKLAEREGIPRDILLRDIHMLLEGSA
FT                 SDWFFTFVDELQTWENFETSITYRFGNPNMDQGIRSKIHERKQLRGESFIA
FT                 FVSEIEKLDRMLSRPLSKRRKFEVVWDNMRQHYRSKISLVEVKDLQQLIRL
FT                 NHRIDAADPQLQQQAGEFPNRRPIHQIEADYSEYESDQSASINAIGSRNGR
FT                 N"
FT   CDS           2412..5717
FT                 /product="Gypsy-600_AA-I_2p"
FT                 /translation="MLQTSGRRTPTGKRMKGCDVGNSFIPRLTDIPKPLPS
FT                 NETYNPFSQIYHIRIQHTNCPHIRVRIFDSEFEALLDSGAGISILNSLDIV
FT                 DKYRLKIQPAAIRVTTADGSAYGCLGYVNVPFCYKGLTKVVPTLVVPEIAR
FT                 HLILGADFWKSFGIKPMIDLGQGLEELETVEHRNDRPQCFTIEPTGELPGL
FT                 ETVEEDETLEIPVYEGPTESDPNVDTIETEHDLTEDQRKQLTDVVKQFELT
FT                 CVGKLGRTSLIEHEIELKEGAKPRNTPMYKCSPYVQQAINDEVERFKSLDA
FT                 IEECYSEWTNPLVPVLKKNGKVRVCLDSRRINKMTVKDTYPMRNMQDIFRQ
FT                 LGKAKYFTVIDLKDAYFQIPLKQESRNLTAFRTTKGVFRFKVLPFGLTNAP
FT                 FTMARLMDKAIGFDLEPYVFVYLDDIVIASNTFDEHLRLLRIVADRLRKAG
FT                 LTISLEKSRFCRKQVVYLGYLLNENGVAIDTSRIQPILDYAQPKSQEDIRR
FT                 LMGLAGFYQRFIQNYSKITAPITDLLTKENKKKFKWTEEAEEAFRELKSVL
FT                 TSAPILGNPDFSKMFTIESDASDRAVGAALVQEQDGVTRVISYFSKKLNRT
FT                 QRRYSAVEKECLGVLSAIQHFRHYVEGAKFRVVTDARSLLWLFNVGTETGN
FT                 AKLLRWALRIQAYDFDLEYRKGKANITADCLSRSIQVDAIVLTEPDFEYED
FT                 LIDKIQSDPGKFTDFRVVDGQVYRYVKSQSRQSDPRFEWKLIPNASQRKII
FT                 VRKEHEKAHLGYEKTLATVKERYFWPRMNEEVRRYCRSCLKCQVSKSGNSN
FT                 VTPPMGAQKPVEYPWQFVTLDYVGPLPPSGRGRHTCLLVATDVFSKFILVQ
FT                 PFREAKAQSLVEFVENMIFRLFGVPEIILTDNGSQFVSKQFKDLLKNYNVS
FT                 HWLTPAYHPQVNNTERVNRVVTTAIRATLKGEHNHWTDNLQEIADAIRNAV
FT                 HDSTKHSPYFVVFGRNKISDGSEYSRIRDNQPTTSDNNQTTTERRQKLFDQ
FT                 IKQNLTTAYAKHSRTYNLRSNPNCPTYSVGEKVLKQTFDLSNKGKGFCRKL
FT                 APKYEPAIVRKVLGTNTYELEDQDGKRLGVYFANRLKKMQAHLNH"
XX
SQ   Sequence 7755 BP; 2292 A; 1550 C; 1731 G; 2159 T; 23 other;
     tttggcgccc aacgaaaaaa aaaaggcttc tattagagta gttttcgata tttatatatt        60
     ttcagatttt ttcatataca attggcttat ttatttattt atatatgtgt ttatttattt       120
     atttatttat ttatttattt atttatttat ttatttattt atttattcgt tttttattta       180
     tttatttatt tatttattta tttatttatt tatttgttta ttcatttatt tatttattta       240
     tttattttat ttttattata gttatttatt tacacatcct catatttatt cgttatatcc       300
     tatatttatt tacatattta tttatttatt catatacata tacatatttg gattgagaat       360
     ctcatctgtt tgtgctaact ttacttgttc attgtaattc attggaaaaa ttgttgaata       420
     attgaatttt gtctaattgg atatttcaaa tctaacgact tgctcaaaat ggtgcgtaca       480
     ttccctcgcg ctgaagatct caaccaagaa gagatcgaat atgaattctt gatacgcaat       540
     caaccacaag atatatacac actcgatttg gcaggaaaac agagacattt gaggagtttg       600
     ttcaaaaatg atgcaaaaga aggtgtgtcg tatcgatcac ctttatcaat atcagaggaa       660
     gctcaacata ttcagggccg aatcgaaaac ctcgagaaag ctctagagaa aaaggtggaa       720
     tcgaaatatg aatccagggt tttgcactat tggtatcgag tgaaatggag tagggctaat       780
     ggggaagaag agaagagaat tcgcagagag ttaagtcaga ggattgagtc gatcatgaac       840
     cggtttcaat ttggaccacc ccaaamccct ttagtaaatc aaggcaatcg catgctwacg       900
     gaaccagagg gagcgttagg tggtctaaga agtttgtcac cagtatccca cggtgggaat       960
     tataccgaga aagcgtcttc gaataacaac gacgagaaga caactggaac aaaacccaag      1020
     caggtattgg tgccagtwga taacaaccct tcagtagtca ctgttagtcg tgtggaatgg      1080
     gaggaaatgc aaagaacttt ggcggagtta acagctaagt tagcagaagt taatgtgtcg      1140
     aaatcaacag ctaacacgat aaattgtggt attcaaactg gaatgataga acgcccaatt      1200
     ccaccaacta attcagtgca acgacactcg ctgccaaaca aatatgggca tgtctcaggg      1260
     ccacctcaac caccgaattc taggagaact ccaacggaac atttagaccg tgatagaaga      1320
     cagttaccaa tgcaacaacg accgtcgaat gattttcggt gtgtcgaaca ggagacgagt      1380
     agtgatgacg aacctgacag acaaccctgg gcaccacgac agcattatgc tgattttaga      1440
     gtgccacgtg agacggcagg gttcgatcag caggcgggac catatgacat gtatagtagg      1500
     aataggaacc ttggatttag ggggagcgag gtagatgatt ggacctgctc cgattatgat      1560
     gacaggtatc gaaaccgacg ttacacacgt aactttaaca attcctatca aagccgtatt      1620
     gagaagtgga aattgagatt ctcaggggat cagaggtcgg tctccattga aaacttcttg      1680
     tataaggcta agaagctggc tgaacgtgaa gggattccaa gagacatatt gctgagagac      1740
     atacatatgc tactcgaagg atcagcatca gattggtttt ttacgtttgt agatgagcta      1800
     caaacgtggg aaaattttga aacgtcgatc acctataggt ttggaaaccc gaacatggat      1860
     cagggtattc gatccaaaat ccatgaaagg aagcaattgc ggggagagtc ttttattgcc      1920
     tttgtctccg agattgagaa gttggatcga atgttgtctc gaccgctttc aaaacgacgg      1980
     aagtttgaag tagtgtggga taacatgcgc caacactaca ggtccaagat ttccctggtc      2040
     gaggtgaaag accttcaaca gttgatcagg ttgaatcacc gaatcgacgc agctgaccca      2100
     cagcttcagc agcaagctgg tgaatttcct aatcggcgtc caatccacca gattgaagct      2160
     gactacagcg aatacgagag cgaccagtct gcttcgatca acgcgattgg aagtcggaat      2220
     ggtagaaatc mmaggcaagg aaaccaacag acgaatgcta gagwaccacg gcaggttcca      2280
     gcaaacgcga accagttagg ttgttggaac tgtcaggaac caggacatag ttggcgtcaa      2340
     tgtcagaaac caaaggttgt cttctgctat gggtgcggaa atttaggacg aaccattcgc      2400
     aactgtgagc gatgctccag accagcggaa ggaggacacc aacagggaaa cgaatgaagg      2460
     ggtgcgacgt tgggaattcg ttcatccctc gcctaaccga cattcccaaa ccactaccat      2520
     cgaacgaaac ctataatcca ttttcacaaa tctaccatat aagaatacaa catacaaatt      2580
     gtccccatat cagagtaagg atctttgatt cagaatttga ggctctttta gactcggggg      2640
     ctggtataag catattaaac tcccttgata tagtcgataa atacagatta aaaattcaac      2700
     cagcagcaat tcgggtaaca acggccgatg ggtctgcgta cggttgtctg ggttacgtta      2760
     acgtaccttt ctgctacaaa ggactaacca aagtagtacc gacgttagtg gtcccagaga      2820
     tcgctcgtca cctgatcctt ggtgccgact tttggaagtc ttttgggatt aaacccatga      2880
     tagacctagg ccaaggatta gaggagctag aaacagtaga acaccggaat gatcgaccac      2940
     aatgtttcac gattgaaccg actggtgaac ttccaggtct ggaaacagtc gaggaagacg      3000
     aaacccttga aatacccgta tacgagggac caactgaatc agatcccaat gtagacacga      3060
     tagaaaccga gcacgatctc acagaggatc agcggaaaca attgacagac gtcgtgaagc      3120
     agtttgagct gacatgtgtg gggaagttag ggagaacgag cttaattgaa cacgagatag      3180
     agctcaaaga gggtgccaaa cctcggaaca cacccatgta caaatgctcg ccgtatgtac      3240
     agcaagcaat taacgacgaa gtagagcgtt tcaaaagtct tgatgctata gaggaatgct      3300
     atagcgaatg gacaaacccc cttgttcccg tccttaaaaa gaatggaaaa gtaagggttt      3360
     gtctggattc gcgaagaata aacaagatga ccgtaaagga cacgtatcca atgcggaata      3420
     tgcaggatat attccgacaa ttgggcaagg cgaagtactt cacggtcatt gatctcaaag      3480
     acgcctattt tcaaattcct ttgaaacagg aaagtcgaaa tttaacagcg tttcgtacga      3540
     caaagggcgt attccgtttc aaggtactcc catttggact aacaaacgca ccgttcacta      3600
     tggccagact aatggacaag gcgataggtt tcgacctgga accatatgtg ttcgtatatc      3660
     tggacgatat agtgatcgcg tcaaacacat ttgacgaaca tttacggctg ttgagaattg      3720
     tagcggacag acttcgaaag gcagggttga caatctcctt ggagaaatcc agattctgcc      3780
     gaaaacaagt tgtctactta ggatacctgt taaatgagaa cggagttgct atagacacgt      3840
     ccagaatcca gccgattctc gattatgcgc agcctaaatc gcaagaagac attaggagat      3900
     taatgggtct cgcaggcttt taccaacgat tcattcagaa ttacagtaaa ataacggctc      3960
     cgattackga tctgttgacg aaggagaata agaaaaagtt caagtggact gaggaagccg      4020
     aagaagcatt tcgggaattg aaatccgtgc tgacatcggc accaattctc ggtaacccag      4080
     acttttcaaa aatgttcacg attgagtcgg atgcctcaga ccgagcggta ggggcagccc      4140
     tcgtccaaga acaagacggc gttacacgag tgataagcta ttttagcaag aaattaaatc      4200
     gcacccaacg ccggtactca gccgtggaga aggagtgcct tggcgtcctc tcggcaatac      4260
     aacattttcg ccactacgta gaaggcgcca agttccgtgt ggtcactgac gccagaagtc      4320
     tattgtggct tttcaatgtg ggtacggaaa cagggaatgc gaaactcctt cgatgggccc      4380
     tccgtattca ggcatacgac ttcgaccttg aatatcggaa agggaaggcc aatattacag      4440
     cagattgtct gtcacgttcc attcaggtcg acgcgatcgt attgaccgaa ccggactttg      4500
     aatacgaaga cttgatagac aaaattcaat cggaccctgg gaaattcacc gattttaggg      4560
     tggtcgatgg acaggtgtac cgatacgtaa aaagtcagag tcgccaatca gaccctcgtt      4620
     tcgagtggaa actaatccct aatgcatccc aacgaaagat tattgtgcgc aaagaacacg      4680
     agaaagctca tctgggatat gagaagacgt tagcgacagt gaaagagcgt tatttttggc      4740
     ctcgtatgaa tgaagaggtg cgtaggtact gtagaagttg tctgaagtgc caggttagca      4800
     aatccgggaa ttcaaatgtt acgccaccaa tgggagccca gaaaccagtc gagtacccgt      4860
     ggcaattcgt caccctcgat tatgtcggac cgttgccgcc gtctggtcgt ggaagacaca      4920
     cgtgtcttct agttgcaacg gacgtcttca gcaagtttat cttagtgcag cctttcagag      4980
     aggcgaaggc acaatcactg gtggagttcg tagaaaatat gatttttcgg ttgttcggtg      5040
     tccccgagat aatactgacg gataacggat cccagtttgt gtcgaaacag tttaaagact      5100
     tgttgaaaaa ctacaacgtt tctcactggc ttactcctgc ataccatccc caggttaata      5160
     acaccgagcg tgttaaccgg gttgtcacga ctgctattag agcaacgctc aaaggggagc      5220
     ataaccattg gaccgataac ctgcaggaaa tcgctgatgc tatcmggaat gcggtacacg      5280
     actctacaaa acatagtccg tatttcgtgg tgttcggtag gaacaaaatc tctgatggtt      5340
     ccgaatactc acgcattcga gacaatcaac caacgactag cgacaacaac cagactacga      5400
     cggaaagaag acagaaacta ttcgaccaaa tcaaacagaa tttgacgacc gcctacgcaa      5460
     aacactcaag gacctacaat ctcagatcaa atccaaattg tccaacttac tctgtgggtg      5520
     aaaaagtgct gaagcaaacg tttgatctgt ccaataaggg taaagggttc tgtaggaagt      5580
     tagctccaaa atacgagcct gcaattgtaa gaaaagtttt ggggactaac acttacgaac      5640
     tggaggacca ggacggaaaa cgtttgggag tctactttgc caacaggctg aaaaagatgc      5700
     aggctcatct aaaccattga gtggtaacct gtttttcaag ctatgaacct cctagtaagc      5760
     ttttcacacc gtgaatctac tagcgagcga ccactaacta cgatgagaag aaaatgccta      5820
     cgggttaatt gcatctagga caatttcgac ggactcgtgg gaggaaagtt ttcgaacgaa      5880
     ccgagcactg agggtaccga aattgatccg aaaaccagct atgaacaact ttccgaagtg      5940
     actacaagac tacgcgtcga ttcaaatacc aaatagggcg aaacttagta gacttacgac      6000
     ccactgaggc gtacgcgact gtaaatatgt aaatagttag ttgttagtta tcctagttcc      6060
     ctaaccctta agattattgt tagtaattag cctaattgtt aaagtaaatt agttcaatca      6120
     ctcacgattt tctttcgttt tggtttgtca tccttgtaaa tatagattta gacagtttgt      6180
     tctgaatttt ccttcattcg tcatatattt cctttccggt tacatagttt gwtatttatt      6240
     taccagtttt cgttgatttt tgttcctaaa agtgaaatat agcataaggw twtcgttttt      6300
     tgtatacact ttgcatatcg gwacgtttct ttacctgttt tgtagtcgtt tcgtagttgt      6360
     agtgcagtag tcctctcgat tctcaatcct tagccttcct tttcgtcttc cagccatcct      6420
     tcttgttccg ttttctgtcs caccagattc gtacmtccgt wattccgtcc tccaatcctg      6480
     tccattatcc tgattgaatc gtccatccag tttccgtacc gttatagtcc gttctcgtcc      6540
     tccagtgcag tgtactgttg gggtcggtcc acctgtaaaa aagtaaacaa acgcaaacaa      6600
     cttacatccg atgttttgga acgataatga tcgtatactc tcctcaaatc tctgccagcc      6660
     gtagcgaaas ccttcctgga tactccgaaa tagcattttc acttgctgca aacccggaaa      6720
     macttwwatt ttcaccaaaa atacgcattc cggacgmwcw cttttctcgc cgcgagcttt      6780
     ttcactgccg tggtgattca ctttgacgtt tcgttttgtt gatgacctgg agtgcatgat      6840
     agactggtat gagtgcgaga tgaactgagc gataaaattc atcgcgttsa tgttggtttg      6900
     aatgcgaggg gtgcttgaat ggtattttgt gtcaatgttt tataatttct tgaagaattt      6960
     tgttgtcggg taaatcccgg tgggtaaaaa ttcttttaag agcacaattt tcgtttctat      7020
     gtcacaatga gcgtttatcg cggatcatta tccgtggctg cgaattgtga gaagaaacag      7080
     ttattttttg atgagaaaga gttgcatctc gcgcgctcgc ttcgtgttgg gctagagatt      7140
     gtaattctaa ctcatcggtc tgcgtccact tggtggaaat tttcgtgtac gttgtcttcg      7200
     tttatcggca ttgtgtcctg gtgtagaaga tagcgtatcg ttctgtgtca gtttaccgcg      7260
     tgagctcact caatgatgtc aaccacattg agtagatgcc ttttaaatgt tgtcaagttt      7320
     tcgtgttgaa tgtttttttt ctcaattttg cgtgtttgag ggtcatcagc aacaacaaca      7380
     actcttcttc aaaaatgctt tcctttttct tgtcaaatcg agatttagta gtaaatgtaa      7440
     atacaaatta attgtttagt tataaatgtt caagttgatt ttcgctggag actggagact      7500
     taatgtcgct gatagtcagt agcaggcagg ttccgtgata gaatctgtgc tgtaaacaga      7560
     gatggagtca actgcggttg acgatgaatc tatatgaccc cgaaaattta aactgaatgt      7620
     ttttgtagtt attagtagtt tttgtatata tgttaatata acttgtattg attgtttggc      7680
     ctacgaaaat ttgattggtg attgtaatct ccattccaat gccaatcaaa ttttcgtact      7740
     tttagtgcgg aatga                                                       7755
//
ID   Gypsy-600_AA-LTR repbase;    DNA;    INV; 2032 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-600_AA_;
KW   Ty3_gypsy_Ele178; Gypsy-600_AA-I; Gypsy-600_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2032
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2032 BP; 525 A; 458 C; 504 G; 544 T; 1 other;
     tgtaacgagc atgtcgttaa gttattttcg taaatgttta tcgttgttgg aattattaat        60
     aaactacaat agaatataaa aatatataaa actttgagcc agcctaatat gaattcaccg       120
     cataagcgtt catttagttc atcccaccac gctccgctgg atttatttta aatgagttcc       180
     actgcaaagc gcgcaaattc tccaaccgaa agcggatgca aatatgctgg gtttcttgct       240
     atgcacgcta tcggcagcgt acatcgacct gttgagaatc ctttgaggat ttattgacct       300
     tttcccgatt ccttcctccc atcattttgg ccgagcagcg aggtggttga ttgaggctgt       360
     tcgtggaatg agaagcgaaa atgcgcgaat atgactgttg ggagcgtgag agcggttttc       420
     gggatcacga acttaccttc gtgatttccg gtgacgaaac caaattatga cgcttgatct       480
     gaggagtccc aagtcttaca agatcacttc gaactgatct gtggaagagg caggagtggc       540
     ccaaatttgt taatcgcgcc gtggtgttga gtagaaggta gaagcgactt gagaagaatt       600
     cgatcagtgg atctttattt aatgtaaatc ctttccctag ttttgcagtt agatttgttt       660
     cgtgtgcaaa tagataggcg gtgtgttatc gtgtgtggct ttgtggatta agaaggtaat       720
     ttgtgcagtt atgttatatg tggataattt gtgcttacac gtgcaatgtg caatggttgt       780
     aatttagatt cgtggccaag gccgtcatca cgcccgacac accacaatcc aaccctacgt       840
     ggccattgct gaccccacca tcaggctccg aagtttcccc ggagcacgcc ggaagagggc       900
     cgttcgccaa ttcacgcgcc ctaggcaggg catatcggcg agttcatcgt ccaagcgagc       960
     acgttttccg ttccgttggt gacgaccagc ggaactcaaa cgcacgtgcc gcgtcatcgc      1020
     cagcatcgat gaaccagtag aggaccatcg gttcaccccc atgacgagca gcagcagcag      1080
     cgattagaag caaaccgctt tctcccgccg gcgcaaggtg gaagagttca ccgccacccc      1140
     ttcccgttca tgcgtcgagc gggcgccgtc accgtcatcg ttgaaaggtc gtgagtactc      1200
     actttatatg ttttatccat gcgcatgtga tttttcccgc cgcaacatag ttaccgttgc      1260
     taggcgtcaa cacggcatat ttatgctagc cgtgaattaa atttcaattt gcccgtaaac      1320
     cgtttgcttt gcaaacgcga gattgcacgt agaaaaccac acctagccaa gcacacacga      1380
     taggtagtag acagggaccg agcacatggg aaaggtagaa agagcgtaga gagagcaaga      1440
     agcgagagag gaatgaacac tttgtagtag gagaaatgaa ataaaaagct caaatgaaag      1500
     ctccgtttta tggcagagga gtagaagtgt ttcaatgaac actgcgggca atgaaagttg      1560
     atacccctga aaatgtgatt tkaattgagg tcccgatgaa gtgaagttgg tcgaaggttt      1620
     cttcatgtcg ttcgtgttcc gtctgtagtt ttctcctgtt gtttatttta ctggggaggt      1680
     tggctccgaa accaaccggg caacttttta ttcggacaca ttttggtccg aagggaactt      1740
     gtaggcttgg ccagtgatga taaaaaccgt catcgctgtt ttgtcaccga ccgacgatcg      1800
     atttcacgct tctggcagtt atactcagaa gtcgttatta gtagtggaat ttctgcgaac      1860
     cgtttcagtc agccacctta cttcccgtcc aaatctggaa aaccgagcct tattccccct      1920
     gaaaggtctc aacggtcggg caaccctaat cttggtggat agtctccctc gggagtggcg      1980
     cttaagctat cccactttat aaagagggaa gtccaggagg ctgaccgtta ca              2032
//
ID   Gypsy-601_AA-I repbase;    DNA;    INV; 5291 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-601_AA_;
KW   Gypsy-601_AA-LTR; Ty3_gypsy_Ele156; Gypsy-601_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5291
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [1335-1844] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           624..2210
FT                 /product="Gypsy-601_AA-I_2p"
FT                 /translation="MKEPSSRLTKFRLALEEYDFSITYIPGKDNVLADALS
FT                 RMTSDNLKEINKKVDQDVLVTTRSKSAKENSDGDPNNEMAGQHSLSGLSIE
FT                 VIFNENKVIPEVRFDAPKHQIKINPAKTLIQLRRIVVMLKEMCKINKINEL
FT                 VIKNTDPGKQFYNMIHTNNLNNGMPPLRIMDQKIKHIESKMEKDLIINDFH
FT                 LLPTAGHAGIAKTLKNIQRRYFWSTMKKDISNFIKSCESCQKNKHIKPKNV
FT                 PQIVTTTANSAFSKIYLDLVGPLVPSYEGHSYILTTQCELTKFITATPILN
FT                 KSTKIVAKAFVENVILNYGVPDEIATDRGTEFMSELFTKICELLKISKLNS
FT                 TAYHHQSIGALENSHKSLGNFLRIYAAGNPGEWSSWTKFYQFAYNTTTHLE
FT                 TEKTPFELVFGKHCKLPSSLSDPPPILTPIYNLDDYSKLLKIKIQATQQAA
FT                 HKSLTEAKTRRTLKLNTNTKELHYVTGQLLLIKNETGNKFSTVYEGPYPVV
FT                 EDRGPNVAIRIKDKVDLIHKSRTKPFITNPSIL"
XX
SQ   Sequence 5291 BP; 2003 A; 932 C; 1038 G; 1318 T; 0 other;
     ataagaacct tattgctatt tttgaaagac ttaggggagt taatcttaaa ttaaatcccg        60
     ctaagtgcaa ttttttgcag caagagttgc tttatttggg acatttcata tcggaagaag       120
     gagttcgacc tgatccttcg aagatagaaa gtataaaaaa ttggcctgta cctaaaacag       180
     ccgatgaagt taaacgtttt gttgctttcg ccaactacta tcgaaagcac ataaaagatt       240
     tttcaaggat ttgtattcca ttgaatcagt tgacaaggaa aggtgtagta tttgaatgga       300
     taccagaatg tcaacaaagc ttcgaaatat tgaaaactaa ttttgttaac ccaccaattt       360
     tggattaccc ggattttgaa aattctttta aattgcaaac tgatgcgtca gggtatgctt       420
     tgggagcagt gctgtctaac cgaaaaaacg gaagaccagt agcatatgca tccagagcac       480
     tgaacaaatc agaattaaat tatggaacta ttgaaaagga actattggct gtagtttggg       540
     cgatcaagca tttcagacca tatctgtatg gaagaaagtt tgatttggaa acagaccaca       600
     gaccattagt ctatttgttt tcaatgaagg aaccttctag taggctaact aaattcaggt       660
     tagcactgga agagtatgat tttagtataa cgtatattcc aggaaaagac aacgtattgg       720
     cagacgcctt atctaggatg acaagcgaca atttaaaaga aataaacaag aaagttgacc       780
     aagatgttct agtgaccacg cgaagtaaat cagcaaaaga gaattctgat ggggatccaa       840
     ataatgaaat ggctggccag cattcattat caggattgtc aatcgaagta atctttaatg       900
     aaaacaaagt aatacctgaa gtaagatttg atgctccaaa acatcaaatt aaaattaatc       960
     cagctaagac tctaatccag ctacggcgga tagtagtaat gctgaaagaa atgtgcaaaa      1020
     taaacaaaat aaacgagctc gtaataaaga atactgatcc aggaaaacaa ttttacaaca      1080
     tgatacatac caacaactta aataatggca tgccaccatt gagaataatg gatcagaaga      1140
     taaagcacat tgaaagtaaa atggagaaag atctcataat aaatgatttt catttactgc      1200
     ctacggcagg ccatgcaggt atcgcgaaaa cactaaagaa catacaaagg cgatattttt      1260
     ggtcgactat gaaaaaggat atttccaatt tcataaagtc ttgcgaatct tgccagaaaa      1320
     ataaacacat aaaacccaaa aatgtaccac agatcgtaac aacaacggca aatagtgcat      1380
     tcagcaaaat ctatttagat ttggttggac cacttgtgcc tagttatgaa ggtcattcat      1440
     acatactaac aacacagtgt gaattgacaa aattcatcac tgcgacacca atattaaaca      1500
     aatcaaccaa aattgttgct aaagcttttg tagagaatgt tatattaaat tatggagttc      1560
     ccgatgaaat tgctactgat cgaggaacag aatttatgtc agagttattt acaaaaattt      1620
     gtgaactttt aaaaatttct aaattaaatt caactgctta tcaccatcag tcgataggcg      1680
     cattggaaaa ctcgcataag agtttaggaa attttttgag aatctatgca gcaggaaatc      1740
     ctggagaatg gtcatcatgg accaagtttt atcaatttgc gtataatacc acaactcatc      1800
     tggagactga aaaaactcca tttgagttag tgtttggaaa acattgtaaa ctgccatcaa      1860
     gtttaagcga tcctcctccg attctgacac ccatttacaa tttggacgat tattcaaaat      1920
     tactaaaaat aaaaattcaa gcaacacaac aagcagcaca caaatcatta actgaagcaa      1980
     aaacaagaag aactctaaaa ttaaatacaa acacaaaaga attacactat gtcactggac      2040
     agttattgtt aataaaaaat gaaacaggga acaagtttag tacagtatat gagggaccgt      2100
     accctgtagt agaagacaga ggaccgaatg tagcgattcg aataaaagat aaggtagatt      2160
     taattcataa aagtaggaca aaacctttta taacaaatcc atcaatttta taaccaatat      2220
     aatacagtaa aatattttta ggacgtgtgg cggatgagct cgctaccact tacgttttta      2280
     ataataccaa acaaatatca ttccatttca cataaatgag tatctctaat gttagttctg      2340
     tagagtcttg agaagactga gctggagata tgagatatca aaggcgatct acaatggatc      2400
     acattagtta aacacattta catttcaaat tattagaatt aaaaataaac atgtatttca      2460
     aactaaatgt tttacgtttc aaccattata aactaaatgt tttaaatttt caactataag      2520
     ataaaaattt aaaaataaat aaatagggcg tgtggcggat acacccctga ctacgcctgt      2580
     ggaacgcgat cggtagaagt agaagtcgaa cgacagaatg ttatgctgga taatcataac      2640
     attcagccgt tgtagaacga tgaactacca aatgcttaca cagcagaaag tatgtgtcac      2700
     gccactcagt aggtaggcta gcgtaaggaa atgatttttg aataaagcag atatatacga      2760
     accaccgact ggacaacatc attctatcca aactaatcca gtcaatgcat ggcgatccta      2820
     agccagtatt aagaccataa attagtgttt agcactaagt gaaagtattc tacactcaag      2880
     tgtaatgaaa agttttgaaa aaagaagtgt ttgaggccga tatcaccgta acagttgtgt      2940
     accagaatga acattacgcg tgacattaat tgcaaattaa atcgcatggg aaaaacttac      3000
     tgaaacgatg ggttggtttt cggctgacga aatcgtcgcc ccaaccatca ccgcgtcagc      3060
     accgaatggt caccacgtag cacaaaccat tgcactttgc gtaatggctg gcgtagccgt      3120
     gggctacata ttggcaaaga gtattatcag gtgccaccgc cagcaaactg agcgggttgc      3180
     cgaacgtacg gcacggctgg cgacgctccc agcttaataa gtgaaaacga gaaaccaacg      3240
     taacaagtga aacatgaaaa agactagttt tctggtgctc cgttaatttt atttttcgtg      3300
     tcaaatgtca aaaaactaaa attttaagag atttttacga ttacgcggta cacagtgact      3360
     cgttgcatcg agaaacagta aagtgctcgt cagagaaaaa caatcggctt gataaaccaa      3420
     tcgaaaagaa gaagttctcg tttcggacta accccgcaaa gagatgaaca atggcagaga      3480
     aacggacgct gcacgaggaa actgatattg attagctacg aggaagtcca ggccaaacag      3540
     caaataggtg aggccgtatt tggagttgca gcagcagcat tggcgaaaat cgagccacaa      3600
     agcacccgga cgggatggcg cgagacgctg ttgtttgaat atcgagaact caaccagaca      3660
     atggaaaatt attaacaaca acagagcagg gggagtaacc aaataaactg gtaaatttaa      3720
     aaaaaaaaaa catatttaca caaaaaaaaa aatttatttt aggtaacaag gataacgaaa      3780
     tcaaaacaac caaaaacatg aaaaactaag gaaaaagaag aagattaacg ataaacaaaa      3840
     gagagaaaaa cagaaatgtg tgagtaaacc aaaatttttt aaaaaattga tatcttttga      3900
     atggatagat tttttataat ccaagatgca attttaagat tgcatactag cttgaaaaaa      3960
     tgtaatttcg gactagagaa aaaaaaatag caagattaaa gaattactaa aactcaaaga      4020
     tagattgaga atcatagtaa aagataaaaa agtaagagta aatctatcaa aacaatatag      4080
     agatctgaga gtgatcataa atgattgtat caaattatta aaaagttcaa acaaaaagga      4140
     cctatccatt caaaagatta ttagtgaaga atcagactca gaggaggacc actcggaatc      4200
     atcagacggg gaagaaacct tacccaagat ggctccaaaa ctagatttgg gcactgccct      4260
     aaagctggta gataaattca acggggaagc tgaaaagctt tccagttttt ttgaaactct      4320
     ggacctcctt aaagattata acgatggagt tccagaaatc gaaattttga aatttgtaaa      4380
     aactcgattg actggtcccg cgcacggtgt aataaacacg gcggtgacca tggccgaagc      4440
     caaaaggctt ctaaaaatta aattttctgt aaaatttagt ccgcaggcca ttgagtcgga      4500
     aatggccacg atcaaacaaa acaagaaaac tttaacggac tacgggaagg agattggtga      4560
     gctagcagca aagcttgcag ctgctcacgt ctccaacgga acattcgcag atgaggcggc      4620
     ggctgaggcc atcgtacaac ccatcgcgat ccgaaacttc atgcagggtt tgaaggactc      4680
     taggacgcaa tttttcctca aggcaaggaa tccaggcaca cttaccagag cgataagtga      4740
     tgctctggag gtgcacacca atgaggagga aacggctatg tggatgcatg ccggcccctc      4800
     agggttttat agaggaaact atcggggaag aagttctaat tttcggacaa gaagaggaag      4860
     cagagcaaga ggtttcggtt atggcagagg ccgaggtaga ggcttccacc aaaaccagca      4920
     acctcccgga aatagacaac aacccaacaa taataacaac tatccacaac aaaaccgtgg      4980
     taacaacaac agaggtagac acggacatgc caatgtagct gtccaagaac ctcaacagcg      5040
     accaaatcaa caacaggaag aagatgttgc gaatattatc gagctttttc gtgagtaatg      5100
     tagggaaaag gctaccatcg ataacattca acatcaaaaa tgaacaggta ccatttattt      5160
     tagacagtgg agcaagttgt tctattattt cagcacatct tgttccccgt gaaacagcaa      5220
     ttgacaaaaa tgacaaaatt aaaataagag gaataaatgg ttcaactttg tcgtcaggaa      5280
     gtattaatat t                                                           5291
//
ID   Gypsy-601_AA-LTR repbase;    DNA;    INV; 1141 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-601_AA_;
KW   Ty3_gypsy_Ele156; Gypsy-601_AA-I; Gypsy-601_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1141
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1141 BP; 431 A; 201 C; 204 G; 305 T; 0 other;
     tgtctttgct atggacaaac agtttttgga atcaaggctt atgttgtcaa gggattaccc        60
     cctagcatac ctgccttgct tggaaaaaat ttcttgtaca agtatgaaac aatattaaac       120
     ttcaaggaac aaacactaat tgcatacgta aacaattgca aaattaaaat accattcaac       180
     acaccaaata tgtcatttat atgtgtaccc gctagaacgg agatcacagc atttgtagag       240
     gtaaatgtaa acgaacctca ggtgttatta agtgaggaag tcaaaccata cgtttttata       300
     gctaattcaa ttgtaaaacc taacaatggg aagatcccag taaaaatttt aaatgtatca       360
     agaaaaacag ttcttttgca tgaactgcaa ccaaaaatgg aaaagcttga tcaatataat       420
     ataattcaac ttgatgatgt caaaactgac tcgaatagag ctgaaaaatt gttaaaggaa       480
     ttaaaaatta atcatttatc tcgtgaggaa aaagccacga ttcgaaaaat ttgtctgaag       540
     tacaacgata tattttgtct atcagacgat aagctatcgg taaccaaaat tttatcacca       600
     tcgattgccg ttaagcaaaa tacgcaacca gtatacacaa aaccatatcg gttgccacaa       660
     tcacaaaaag aagaaattgc caaacaaatt aaaaatatga ctgacagtgg tataatagag       720
     gaagcccgtt ccgaatggaa tagcccggtg ctcctcgtac ccaaaaagtc atgcgatgac       780
     aaaaaaaaat ggaggatggt aattgattac cgaaaggtaa acaattccct tcaagatgat       840
     aggtttgaat taggaaatat cgaagacatt atagattctc tggcaggggc caagtacttc       900
     acgcacttgg atctctcgca gggatactat caatgtgaga tagatcctaa aagtagacct       960
     ataacagctt tttcaacagc cactggtcaa tttcaaatga ccaggctgcc aatgggatta      1020
     aaaattagtc cctcaacttt ttcaagatta atgacagtcg cgatgtcggg actgaatatg      1080
     gaaaaatgtt tagtttatct agacgatata atagtttttg gcaagacact agaagaacac      1140
     a                                                                      1141
//
ID   Gypsy-602_AA-I repbase;    DNA;    INV; 4508 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-602_AA_;
KW   Gypsy-602_AA-LTR; Ty3_gypsy_Ele77; Gypsy-602_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4508
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3459-3923] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3240..4496
FT                 /product="Gypsy-602_AA-I_3p"
FT                 /translation="MYSDRIVVPKKLQQKVLGQLHRGHPGVERMRSLARNF
FT                 VYWPNIDDHITALVRTRQECASVAKAETKTKLESWPIPEKPWQRVHADFAG
FT                 PINDTYFLLVVDSFSKWPEIIPTKRITTAATISSLRKIFGRFGMPEVLVTD
FT                 NGPQLTSDTFEEFCEANGIMHLKTAPFHPQSNGQAERFVDTFKRTVKKIQA
FT                 GGEGLDEALDIFLTCYRSTPCRSAPGGKSPAEILIGRPLRTSLELLRPPSK
FT                 FTKATNNKQDRQFNEKHGAKEKSFDVQDKVYAQVHQGNNWSWIAGEIVERV
FT                 GRVMYNVWLPERQRLIRSHSNQLRKRYNDVNQTPGEVEPSIPLDILLGAWG
FT                 LNQPEDSLAASVEPPPGEPEGFDQMQREFLRELFEPASQPRRARMPTRATD
FT                 LDEALPRRSSRQRHTPVRYEPYQLY"
FT   CDS           join(186..1610,1614..3188)
FT                 /product="Gypsy-602_AA-I_1p"
FT                 /translation="MPTPLPLGPAAQAAGSNADQPFKETILQLLNNQHTLM
FT                 TRMAEQMANIQGNVQNTSRNELVLDSLASNITEFAYDLESGCSFDAWFSRY
FT                 ADLFEKDASKLDDDAKVRLLLRKLNPAAHERYTSFILPKLSREFSFDETVA
FT                 KLKTIFGSPVSTFHRRYQCLQTAKDENEDFISYSCKVNRACVDFKLQELKE
FT                 DQFKCLIFVCGLKSPKDADIRMRLLSKINETQDITLEKVVEECKSLINLKK
FT                 DTVLIGSQSASTAGAAATHAVRANSPNGNRRKKDRFGGSKSDTPKTPCWSC
FT                 GGMHFSSQCSFKSHKCRDCGRTGHKEGYCSCFASKPSSKKNKGKQQNKNHA
FT                 AKIVTVKNVNRSRRYVETAINGVPVDLQLDSGSDITIISKQNWMKVGAPQT
FT                 SQPDCHVQTASGDRLGIEAMFRASYTIGGTQKEGNCYVCCADLSLNVLGSD
FT                 LMDEFGLWDVPFSSFCKLVSSPQPNQQVLEKEKFPDVFTNRMGLCTKTQVH
FT                 LTLKPDAHPVFKPKRPVSYNMEAVVEDELKRLESSGIITPVTYADWAAPIV
FT                 VVRKPDRTVRICADFSTGLNSALESNSYPLPLPEDIFNRMAQCTMFSHIDL
FT                 SDAYLQVEVDEESKKLVTINTHKGLYRFNRLSPGVKSAPGAFQQIMDAMLS
FT                 GIPCTCPYLDDILIGGRNAEEHKRNLCLVLQRLQEYGFTVKLEKCRFFMRQ
FT                 VKYLGQLLDSEGTRPDPDKVKAIVNMPPPHDVSTLRSYLGAVNYYGKYIRE
FT                 MRTLRQPLDELLKEGSSFQWSDACQRSFDRFKEILQSPLMLTHYNPRLEIV
FT                 VSADASNVGIGARIAHRFPDGQEKAIYHASRSLTPAESRYSQIEKEALGLV
FT                 YAVTKFHRMIYGRQFVLQTDHKPLLAIFGSKRGIPPYTANRLQRWALTMLL
FT                 YDFRIEYISTDHFGHADILSRLINSHVKPDEDFIIATIEVETVICNIVCQS
FT                 IEHLPISYKTIAAETSQDRTLQKVMEFVQKGWPSDAKSLSGTPEV"
XX
SQ   Sequence 4508 BP; 1193 A; 1223 C; 1099 G; 991 T; 2 other;
     ttttaattcg tttattgtat ttagaagtac cgttaataaa tcatatttgt ttgttacgtt        60
     aatcactctc ggttcactct cacatcgtaa caaagtggcg acgagtcggt aaaaggtcgc       120
     accgattgtt tttctcgcga aaatcgtcgt aaaaacgtcg cgtcgtttgc agctttgtat       180
     tcgccatgcc aacgccattg ccactcggtc cagcagcgca ggcagctggt tccaatgcgg       240
     atcaaccatt caaggaaacc atcctgcagc tgctcaacaa tcagcatacc ttgatgaccc       300
     gaatggcaga gcagatggcg aatatacaag gcaacgtcca aaacaccagt cggaacgagc       360
     tggtcctaga ttcccttgcg agcaatatca ccgagtttgc ttacgatcta gagagcggtt       420
     gctctttcga cgcatggttc tccagatatg cggacctttt cgaaaaagac gcttccaaac       480
     tggacgacga cgcaaaggtg cgactgctgc ttcgcaaact caatcccgcc gcacacgaaa       540
     ggtacacttc gttcattctc cccaagctgt cgagggaatt ttccttcgac gaaacggttg       600
     ccaaactaaa aaccatcttt ggtagccctg tttccacctt ccatcgccgg taccaatgcc       660
     tgcagacggc gaaggatgag aacgaagatt tcatctccta ctcctgcaaa gtcaaccgtg       720
     cttgtgtcga cttcaaacta caggagctca aagaggacca gttcaagtgc cttattttcg       780
     tgtgcggatt gaagtcaccc aaggacgctg acattcggat gcgcctgcta tcgaagatca       840
     acgaaacgca ggacataacg ctggagaagg tagtggagga atgcaaaagt ttaatcaact       900
     tgaagaaaga caccgtactc atcggcagtc agtctgcctc caccgccggt gctgctgcaa       960
     ctcatgctgt tcgtgccaat tctcccaacg gcaaccgccg taagaaggac aggtttggtg      1020
     gcagcaaatc cgacacgccg aagacgccgt gttggtcatg cggcggtatg catttctcca      1080
     gccagtgcag tttcaaaagc cacaaatgcc gcgactgtgg ccgcaccggc cataaagaag      1140
     gctattgttc ctgtttcgca tccaagccaa gctccaagaa gaacaagggg aagcagcaaa      1200
     acaaaaacca cgcagccaag atcgtgaccg tgaaaaatgt gaatcgcagc cggcgttacg      1260
     tggagacggc aatcaacggt gttccagtcg atttgcaact ggactctggc tcggacataa      1320
     cgatcatctc taagcagaac tggatgaagg tcggagctcc tcaaacgtct cagccggatt      1380
     gtcatgtgca gacggcttcc ggtgacagac tgggcatcga ggccatgttt cgagcatcgt      1440
     acactatcgg cgggactcaa aaggaaggta attgctacgt ttgttgtgct gacctttctc      1500
     tgaatgtttt aggctcagac ctcatggatg agtttgggct atgggacgtt ccgttttcgt      1560
     ccttctgcaa gctggtcagc agcccgcaac caaatcagca agtgctcgaa mtgaaggaaa      1620
     agttccccga tgttttcacc aaccgtatgg gactgtgcac caaaacacag gtgcacctca      1680
     cgctcaagcc ggacgctcat cccgtattca aacccaagcg gccagtttct tataacatgg      1740
     aggccgttgt tgaggacgag ttgaagcgcc tagagagttc gggcatcatc acaccagtca      1800
     catacgcgga ttgggcagca ccaatcgtcg tagtccgcaa gcccgatcgc actgtccgca      1860
     tttgtgcgga cttttccacc gggctaaaca gcgcgctcga atcgaacagc tacccactcc      1920
     cgctcccgga ggacattttc aaccggatgg cgcaatgcac gatgttcagc cacatagatc      1980
     tgtcggacgc gtatcttcag gttgaggtcg acgaagaaag caagaaactt gtcaccatca      2040
     acacccataa agggctctac cgtttcaatc ggctttcccc cggcgtcaaa agtgcacctg      2100
     gcgctttcca gcagattatg gacgccatgc tgagtggtat cccgtgcaca tgtccatatc      2160
     tcgatgatat cctgatcggt ggacgaaacg ccgaggaaca taaacggaac ctgtgccttg      2220
     ttctacaacg cctacaagag tacggtttca cggtcaagct cgagaagtgt agatttttca      2280
     tgcgccaagt caagtacctg ggtcaacttc tggattcgga gggcacccgc cccgatccgg      2340
     acaaggtgaa ggcaatcgtc aacatgcctc ctccacacga tgtctccaca ctgcgatcgt      2400
     acctgggtgc ggtaaactat tatggaaaat acatccgaga aatgcgcaca ttacgacagc      2460
     cgctcgacga gctgctgaag gagggttcca gcttccagtg gtccgatgct tgccaacgtt      2520
     cctttgaccg ctttaaggaa attcttcaat caccgctcat gctgacgcac tacaatcctc      2580
     gcttggaaat agttgtgtcg gcagatgcgt cgaatgtggg cataggcgcc cgcatagcac      2640
     accggtttcc tgacggacaa gagaaggcca tctaccacgc atcccgaagc ttaactcctg      2700
     ccgaatcccg ctacagccag atagaaaagg aggcccttgg tctggtgtac gcggtcacca      2760
     aattccatag gatgatctac ggaaggcaat ttgttctcca aaccgatcac aaaccgctgc      2820
     tagcgatttt cggttcgaag cgtggtattc cgccgtacac agccaaccgc cttcagaggt      2880
     gggccctcac catgctccta tatgacttcc ggatcgagta catctcaaca gaccacttcg      2940
     ggcacgcaga cattctctct cgcctaatca actcccatgt taagccagac gaggatttta      3000
     tcattgctac gatcgaggtc gaaacagtca tctgcaacat cgtctgccaa tccatcgagc      3060
     atctcccgat ctcgtacaag acgatagccg ccgagaccag ccaggatcgg acgttgcaga      3120
     aagtcatgga gtttgtgcag aagggttggc cgagcgacgc aaaatctctc tccggaacac      3180
     cggaggttma tcaattcttt gcgcgtcgtg agtcgttgta cgtggcccag aaagttctca      3240
     tgtacagcga tcggattgtg gtaccgaaga agctacagca gaaagtactc ggacaactac      3300
     acagaggtca tcccggcgtt gaacgcatgc gatcgttggc acggaatttc gtgtattggc      3360
     ccaacatcga tgaccacatc accgctttgg tacgcactcg ccaagaatgt gcctcggtcg      3420
     ccaaagctga aactaaaacg aaactggaat cgtggccaat ccccgaaaaa ccttggcaaa      3480
     gagtgcacgc agatttcgct ggccctatca acgacacgta cttcctgcta gtagtagatt      3540
     cattttcaaa gtggccggaa atcattccga ctaaacgtat cactaccgct gctacaattt      3600
     ccagtcttcg gaaaattttt gggaggttcg gaatgccgga ggttctggta accgacaatg      3660
     ggccacagct aaccagcgat actttcgaag agttctgtga agcaaatggg attatgcatc      3720
     tcaaaacagc accgtttcac ccgcaaagca acggtcaggc ggaacgcttc gttgacacct      3780
     ttaaaaggac cgtcaagaaa atccaagcgg gaggggaagg cttggacgaa gcactcgaca      3840
     tcttcctcac ctgctaccga tcaactccct gtcggagtgc acctggtggg aaatcgcccg      3900
     ctgaaatcct tattggtcgt ccactgcgca cgtctctgga actccttcgt ccgcctagca      3960
     agttcaccaa ggctaccaac aacaagcaag atcgtcagtt caacgagaaa catggtgcca      4020
     aagaaaagag cttcgatgtt caagacaagg tgtacgctca agtgcaccaa ggcaacaatt      4080
     ggagctggat tgctggagaa attgtggagc gtgtcggacg agtgatgtac aatgtgtggc      4140
     ttccggagcg acaacgtcta atccgctctc acagtaatca acttcgtaaa cgctacaacg      4200
     acgtcaatca aacaccaggt gaagtcgaac catccatacc gttggatata ctgctaggcg      4260
     catggggtct caatcaacct gaagactccc ttgctgctag tgtagaacca ccgccaggag      4320
     aaccggaagg attcgaccaa atgcaacgag agttcttacg agagcttttt gaaccagcaa      4380
     gtcaaccacg tcgagctcgg atgccaacaa gagcaactga tttagatgaa gcgctcccac      4440
     gtcgctcttc aagacagcgg catacaccgg tgcgctacga accgtaccag ctctactaaa      4500
     aggggagg                                                               4508
//
ID   Gypsy-602_AA-LTR repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-602_AA_;
KW   Ty3_gypsy_Ele77; Gypsy-602_AA-I; Gypsy-602_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-131
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 131 BP; 26 A; 40 C; 37 G; 28 T; 0 other;
     tgttggggta ccaccctatg cgcctttgat cacggctgtc acccgacagc gagcccgaca        60
     ggtgtcatcc aaccggatgc tgggtggtac ttgtcatcta ggcaatcgta gcagtacacg       120
     ccggtcgcac a                                                            131
//
ID   Gypsy-603_AA-I repbase;    DNA;    INV; 6468 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-603_AA_;
KW   Gypsy-603_AA-LTR; Ty3_gypsy_Ele116; Gypsy-603_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6468
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4292-4768] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2101..3198
FT                 /product="Gypsy-603_AA-I_1p"
FT                 /translation="MINSIIINPEDDERPHAEISILGKKLRGLLDSGASCS
FT                 LLGGNAVKIIEELRLRKGEAKGQIKTVDGTAHNIRNFVYLPIAFNNRIQTI
FT                 AVLLAPSLPECIVLGMNFWRTFGVKPVCCSLEEEGIEIDTNPETAKTPEEE
FT                 PMKELTPEQRKALHRVIATFPTAEDGKLGRTSLYEHRIDVGEAKPKKQLNY
FT                 PMSKYVLDEVNKEIDRMVALDVVEEAMFSPWNNPLVAVKKKNGNYRVRLDA
FT                 RHLDSIMTNEGYPIPQISAIINNLGGCAYISSIDLKDAFWQLPLAAASRPL
FT                 TAFTVPSRGHFQFKVVPFALCTASQALSRLMTHLFADLEPRVFHYLDDIII
FT                 CSRTFEEHLEMLTEVAARYGVRT"
FT   CDS           3515..5104
FT                 /product="Gypsy-603_AA-I_2p"
FT                 /translation="MPDYSKPFSVACDASDIAIGAVLTQEVDGEEHPASYF
FT                 SQKLSSSERKYSVTERECLAVIRAVEKFRGYIEGVRFVVYCDHAALSYLLS
FT                 MKNPTALMSRWILRLNAFDFEIKYRKGSINVVPDALSRVVAVTTFATGEDP
FT                 EDPWYEALAHKIKTQGDDYPDFRLVDNEIYKNCLCREGGTTTHKWKRIVPL
FT                 KNRAEVIKRCHDAPTAGHLGFHKTLDKVQSHFYWPKMRENIGQYVRSCEVC
FT                 KASKAPNSAMMPDMGGLKPARIPWELVSVDFVGPLTRSKRGNTVLLVVVDW
FT                 ITKYVIAHPMRSADSGKMVEFLEQHVFLKFSRPRIILSDNGRQFESIAFKS
FT                 LLARHKITHMKTAFYSPMVNNAERVNRVLITCVRALLDENHAGWDENLAAI
FT                 TAAINSAKHQVTGVSPHFANFGRDLILHTDLYVQANMNTPEDPKVAQDMRL
FT                 SAMKRIQEFVLQRIRKNYEKTKQRYNLRTRQVDFNIGDVVWRRTFTQSSKA
FT                 DHVNRKLDPKYVPALVKQILGKNIYMLEDVADGK"
XX
SQ   Sequence 6468 BP; 1936 A; 1553 C; 1626 G; 1340 T; 13 other;
     ttggcgccca accaaaacga gcccgtagta ttattatctt atagaataat actcaaaaat        60
     ttgtgagaaa ttttgttttg tccatttggc taacttttcg tgttgaagat actttagaca       120
     gtatggatcc cttatacctc agtgatgagg agctaaatta cgagttggct ttgcgccgat       180
     gcaaccaacc tacttctgcc acacgcagaa tcaaaggcac gcagctcaga gcgctgatgc       240
     aaaaagagtt tgccgagaat gtaaaataca cctcatccga gcatgcaatg ccggcagawg       300
     tgaacattca tcgttgtgaa cagcaagtca gactactgat tccaatgatt gagacggcac       360
     tcaaaagacg taacacagat ttcctaatcc aatctmgatc kmgtatgatt cattatcgag       420
     atcgtctgtc aatcgtsaaa cctccggsag acctgatcga tatgcacgcg tcggtgtcaa       480
     tgcaagtgaa gttcttaata gaagacatca gtgacagact tggtgatccg ttgatcagcg       540
     mgagtagtca acaagtktma cmaccagcgs aaggagcggk atcgctggaa tatcaacagc       600
     actacaacac tcttctatcg ccggaaagag aacaaaacca gcatcgaatc aacgaaccac       660
     agaaggcagc agcgcaaacg ggtgttgtga acaggcaaag caatgaaggg ctgaacaacg       720
     acttcatccg tgcgacgagt tcgccgatta gagcaggaag aggaagggga cgtggagttg       780
     cgatcaatct ctcactacct ggcaggaatt cttcgcaacc gagaggcaca cctcctccag       840
     cttaccatcg agctggacca gaaatagctc acgacagtac aaccgatcgc ttgagagatg       900
     aactgctcat acagctacta caacgagaac agcacacgca agatcggcaa gacgcaggga       960
     gaggtctcaa agcagttcac aactggccat tcaagttcaa gggcgaaaag gacaccacat      1020
     ctctcaacac ctttctcgac agagtggaaa cattcgcacg gtcagaaggc ctttccgatg      1080
     atacgctgct gaagtccatc aaacatctac tactagacga tgcgttggac tggtatggac      1140
     gagcgatatc gcagaacctg ctggtaacat ggacagcttt caaaaacgag atacggaagg      1200
     aatatctgcc aagtagttac gagcagatcc tcaagttaga agccatcttc cgattccaag      1260
     ctccggatga gtctttcgca aagtactacc gtgacatatc cgcattattc cgcttcatac      1320
     aaccaccaat gagcgaacaa gagaaattct tcattgtgaa gaaaaacatg aatgcggact      1380
     atgcaacgat tgttacggca gcgagaccac tctctctgca agacatggtg gaagtgtgta      1440
     gcagctatga tgaaacgcgc atgctgttaa accgtcagaa acgagttcct tttccgcaga      1500
     gcagtctgct agaaccgaac ttagcaacgc cagcgaatcg cccaacgccg ttaaatcgag      1560
     gaaatccgcg gttcgggcga gtgcacatgc tgaactcaga ggaggatttt agtcctctag      1620
     aagcttgcag ctgtcaacca caagcccacc caagcaaaaa cgcgaacgtc agcgagagtc      1680
     aaaagaagtc aatggaaacg caatcggcag cagaaaagga caactggcag cagcgaattc      1740
     tggaactgtc ggagcaagtg aatgcgctaa aacttcgaca atataacagg gaagaaagac      1800
     cacatcgcag tcagcatcaa caggaacaag agtgcaagaa catcatcagc aacaacctgg      1860
     cgatcaaagg agaactggtt tgatctgttg gaattgcgat gaagaaggac atcggttcat      1920
     ggactgtcca aagcctcaag cggtcatgtt ttgctatcgc tgtgggcaca aaggctattc      1980
     gctgcgtagc tgtccgactt gtcgaacagg tctgggaaac gctgtcgcgg ggaatcgcta      2040
     atcgagggaa ggagatcctc gcaaaacttc tacaatccct cagacatccc gaaccaagcc      2100
     atgatcaatt ccatcatcat caaccccgaa gacgacgaac gcccgcatgc agagatatca      2160
     atcctgggga agaagttacg tggactgctg gacagtggtg caagctgttc ccttcttggc      2220
     ggaaacgcgg tcaagatcat cgaagaactc cgactgcgga aaggagaagc aaaaggtcaa      2280
     ataaaaacag ttgatggtac cgcgcacaac attcgcaact tcgtatatct tccaatagct      2340
     ttcaacaacc gaattcagac aatcgcagta ctcctggccc catcgctacc agaatgcatt      2400
     gtgctcggca tgaacttctg gagaacattc ggagtaaaac cggtgtgctg ttcgttggaa      2460
     gaagaaggca tcgaaatcga cactaatccg gagacagcga aaacaccaga agaggagccg      2520
     atgaaggagt tgactccaga gcagagaaag gcattacatc gagtcatcgc aacatttcca      2580
     actgcggagg acggcaagtt aggtcgaacc agcctgtacg agcaccggat agatgtcggt      2640
     gaagcaaaac ccaaaaagca actgaactac ccgatgtcca agtacgtgct ggacgaagtc      2700
     aacaaggaga tcgaccggat ggtggcacta gacgtggtag aggaagcgat gttctcccca      2760
     tggaacaacc cactcgtggc ggttaagaaa aagaacggga attacagggt acgcctcgat      2820
     gcgcggcatc tggactcgat catgaccaac gaaggatacc cgattccaca aatctccgcc      2880
     atcatcaaca accttggggg atgcgcgtac atttcgtcga tcgacttgaa agacgctttt      2940
     tggcaactac cactagcagc ggcgtcccgg ccgttgacgg cgttcaccgt accctcacga      3000
     ggacacttcc agtttaaggt agtcccgttc gcactctgca cggccagcca agctctatcg      3060
     cggttgatga cgcatctgtt cgcagaccta gagcctcgag tcttccatta tctggatgac      3120
     atcatcatct gctctcgtac tttcgaagag catttggaaa tgctgacgga ggtagcggcc      3180
     cgctacggcg tgcgaacctg acaatttccc agaaaaatcg aagttctgca gagaggagat      3240
     aagatatctt ggttatgtgc tgaatcaaga cggctggaag gggacgggat agcctgcatc      3300
     gtaaagtacc cggcaccaac aaccagaaag gaggtgcaga gatttctggg cctgtaccag      3360
     taactggtac agaaggttca tagcggagtg ctcacggatt gctgccccgc atagaccgag      3420
     ttaacgaaga cgaagataaa gttccgctgg acggcgaagc agaggaggct tcttaaacct      3480
     gaaggccgcg ctagtgtcag ctccggtgtt gctcatgccg gattacagca aaccattctc      3540
     ggtagcatgc gacgccagtg acatcgctat tggtgcggtc ctaacgcagg aggtagacgg      3600
     agaagaacat ccggcaagct acttctcgca aaagctgtcg tcgtcggagc gcaaatactc      3660
     ggtaaccgaa cgggaatgcc tggcagtaat ccgcgccgta gaaaagttca gagggtacat      3720
     agaaggagtg agattcgttg tgtattgtga ccatgcggca ctttcgtatc tactgtccat      3780
     gaaaaacccg acagcgctga tgagcaggtg gatcctaaga ttgaatgcct tcgacttcga      3840
     gatcaagtac cggaagggaa gcatcaacgt agttccggac gcgctctcgc gggttgtagc      3900
     agtaaccacg ttcgctacag gcgaagatcc agaggaccca tggtatgaag cgttggcgca      3960
     caaaataaaa actcaaggag acgattaccc ggacttcagg ctggtggaca acgagatcta      4020
     caagaactgt ctctgcagag aaggaggaac aacaacgcat aaatggaagc ggattgtgcc      4080
     gttgaagaat cgcgcggagg tcatcaagcg ctgccacgac gcgccaacgg ccggtcatct      4140
     aggattccac aaaacgctag acaaggttca gtctcacttc tactggccga agatgagaga      4200
     aaacataggg cagtacgtcc ggagttgcga agtttgcaaa gctagcaaag cgccaaactc      4260
     cgccatgatg ccagacatgg gaggtctgaa acctgccaga ataccatggg agctggtgtc      4320
     agtggacttc gtgggacccc ttactcgctc aaaacgcggc aacacggtac tgttagtcgt      4380
     ggtggattgg atcacgaagt atgtcatcgc tcatcccatg cgcagcgcag attctggaaa      4440
     gatggtggag tttctggaac agcatgtctt cctgaagttc tcacggccaa gaatcatcct      4500
     ctcagacaat gggagacagt ttgagtccat cgcgttcaaa tcgcttctgg cacggcacaa      4560
     gatcacgcac atgaagacgg ccttctattc gccgatggtg aataacgccg aacgcgtgaa      4620
     tcgagtgctg atcacctgtg ttcgagcgct tctggatgag aaccatgcag gatgggacga      4680
     gaatctggca gcgataacag cagccatcaa cagtgctaag catcaagtga cgggagtgag      4740
     cccgcatttt gcaaatttcg gacgagacct gatactccat acggacctct acgtacaagc      4800
     gaacatgaat acaccggaag atccgaaagt ggcacaggac atgcggttgt cagcgatgaa      4860
     gagaatccaa gagttcgtgc tacagcggat taggaagaac tacgaaaaaa cgaagcagag      4920
     gtacaatcta cgcacgcgac aggtggactt caacataggc gacgtcgtct ggaggcgaac      4980
     cttcactcag tcctccaaag cagatcacgt aaacaggaaa ctggatccaa agtacgttcc      5040
     ggcactagtg aaacagattt tggggaagaa catctacatg ctggaagacg tcgcggatgg      5100
     gaagcwaggc cgctatcacg caaaagacat caaggcggac taaacgttat tggttcagct      5160
     atgtccacag gcaaaccctg tcaacaatga gttctacgct ccgaaaatcc gtgccaaatc      5220
     gggaaaatgg cagccaagtc aggtgtgatg agcaacaact tcttcatgac tacctctcca      5280
     cctcgacaag accttcagct atgaaaacac gacgtccaga agcctacgga aggcatggga      5340
     gattgggacc ctgaaaactt atagtgagta aggagactcc aaataccagc aactggagcg      5400
     acaacacgac aagacgaagc ctacggaagg cacgggagat tgggaccctg aaaacttaaa      5460
     gtgagtaagg aggctccaaa taccaacgac ggaaacaaca acaacacgac aggacaaagc      5520
     ctacggaagg cacgggagat tgggaccctg aaagcctgta gtgagtaagg tggctccaaa      5580
     taccaaacaa gatcagctat gaacaacacc agttacgagg agttcagctc gagaaagaca      5640
     ccaagcgtgg aagcaatgaa gtcacaagcc ctggatggtg tactggcggc agcagcagct      5700
     gcaaatatcg atcaggtcca aagtgttacg cattcctgta aatctgtcaa ataaaggtct      5760
     tctcggcacc tcgtagtgtt cgggcgattg catggcatta tcatcccggg tatcacccaa      5820
     aagcaacgcg accaggggcg cggatattcc aaggtaactt ggaattgtga accctattct      5880
     tggacccatg cacatcgagg gcgaggaaat gcgctctttt ccgaaccaac tacacaagct      5940
     atgcactcga cttcggtcag tgactaagcc attaggcacg aaaataggca attataagga      6000
     atcataccat cgatgatgtc ctagccttaa gtaatttagc caatacaaca atttacctct      6060
     atgtttcttg tgtagatgta agatttttct agttttagtt acaactagac ataatctatt      6120
     tgaatgttcc actgtgggac agctagcata gagatgatgg acaagaactt ctctagagac      6180
     catttgccaa gacttcgttg gcgtctgatc aattcatctg acaggactcg ctgtcgttaa      6240
     tcagaaactt gaagctttgg attatgtgta ccctctctgg caagtggtgc gacttgcgta      6300
     aatttagttt ggattttggt gcctctttgt atgtcttgaa gtctgttcaa gctaaactac      6360
     acgatcagtt cagtctctag aaaacttctt aacggaagtg aaagtttaga atttttcatg      6420
     aatcgctgtt accgattcat gaaaaattca atccccacag tgaagttg                   6468
//
ID   Gypsy-603_AA-LTR repbase;    DNA;    INV; 1331 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-603_AA_;
KW   Gypsy-603_AA-I; Gypsy-603_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1331
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1331 BP; 387 A; 310 C; 360 G; 272 T; 2 other;
     tgtaacgttc atttcgaatt tagttaattt cgagcataaa ttacactgta cacaaaagcg        60
     attaactcga acacgccctt tgagaatacg atccacatct gtcatcatca gtactaccac       120
     aacacaggaa aaagtttgtt tccgctgtgg cagacaaaaa gtgcactggc agcagcaaga       180
     gaagaggtgc tagtgctcga agctgccgag atagctgcct cctcgtggca gactaagttg       240
     atcgaagcaa atccttgccg acacggtgcc aggacgcgcg gaccaaagga aagttccaga       300
     tttcgacggg acagcagcta acgggattcg gaccgcctag cccggatcaa ggaaaaaacg       360
     ccagcacacg cgctgcggga ccggtgagaa gagcacggct gtgttcaggg actgtgccaa       420
     ggtaatttag atcgcaatgg ccgtataaca tggawtgtta accaccgact ctctgccaaa       480
     ataggaatcc sttccgagca tcatccggca aaaaccaacg gcaaaaagta gccaggacaa       540
     ggaagttctg aaggaactag cgtgaggtaa ttttgaccga cattaacatg cgcgtaacgt       600
     tttgtgacga tttcccgttc cacacagaag tcgaccctaa tctccaaccg tccgtttggg       660
     aacgaggaaa gcgctgagaa atactccgaa aaagcgtccc aaatccacgg gtgagtcact       720
     ctagtcggaa gcgtccgcat gttactaatg aaggccgttt agggcgcttt ttttctgtta       780
     cgtttcaatc cgaggcagca aagcatccaa tccggacaag cacttggccg tgggagatcc       840
     tggtgaatcg ctggatcgag gacctaacag atctcggttg tcggcaagag atccaaaccc       900
     gtcggccaga gcaaatacct gtctggtggc attcacagag tggtcggtgt ctgctaacgg       960
     aggttcatcg aacgcgaacg tagccaagct ccacagtgag gggcatttag aggaacggag      1020
     gcggtgcaaa aaggtccgaa cagcgagact gtcgaccatt gtcggcgcga agaagacggc      1080
     gagctagacg aggtgacgaa ctctagggag aagaagccgt gagtacacta tagcatgcgc      1140
     acaagtgatg atcgcccgca gggcaagaag gagaccataa tctggccgaa gaccatagca      1200
     tagggcatta gcgtaggagt tagcattatc gaaggcgtgt gatagatgtg tgtgggagcg      1260
     ctaaaataca gaatgcttcg aaattaattt tgtggctcta tattcttttg gtttgaggga      1320
     aaaacccaac a                                                           1331
//
ID   Gypsy-604_AA-I repbase;    DNA;    INV; 4356 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-604_AA_;
KW   Gypsy-604_AA-LTR; Ty3_gypsy_Ele17; Gypsy-604_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4356
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3278-3754] - Integrase core
CC   'CCCA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..4315
FT                 /product="Gypsy-604_AA-I_1p"
FT                 /translation="MPVTRKMAAKTKREQLEDEPFYDVASDGMDDDQTDGS
FT                 KGDTQAQLPTQTHSFALHPHDVGKLIPEYSEGDGVVKWLRRIDHFRVLYGW
FT                 TEQVCLLYASTRLSGAAANWYRRQEEQIFNWPQFKDQLILAFPETFDEADI
FT                 HRQLEAVKLEKNESYESYVYRVDALAQKGDFSTSATLKYIIKGLRYDKVFA
FT                 SLLSVQYKSTLELLRHIKWVASNLNMIPQTSTRFEKTVAFNASESASPLTC
FT                 FNCRESGHKSIDCPKPPRKERCGRCLKVGHATDKCSAAAYHPKQKQPFQLG
FT                 TNATGRSATNAVFPSDQRNAVSVDESSQAMVELDVAEDRIRALALVDSGSY
FT                 ASLIKYSLLPPTIPIRNTREEIVGINSIKVNVVGEWKTFVYIDHIKYNVRF
FT                 LVVSEDTMQVGLILGRSFLKDNEIQFIRFQMSDIPESSDNLSKLSEWSMFE
FT                 DMHFSYNLEEDYLDLDVGDNSETYSFRRKLEDILKVSYFDRQRPETPSVKY
FT                 QAKIRLKENKIFSATPQRLSVFEKNELDKIIVDLLEQGVIRESDSPYTSRV
FT                 VLTKKKNNSYRMCVNYKPLNRIVERNRFPMPIIEDQILKLQGKRYFSTLDL
FT                 KNGFYHVELTEESKQYTSFVTNSGQYEFNRLPFGYANSPAIFVKYLSKVLE
FT                 PFIQDGRIVVFIDDMMIASENAEEHLQTLSEVLEVLSDNHLELQFSKCRFL
FT                 KTHTEYLGYDVRFNCIQPSDRHIQSIRDFPVPIDRKSLQRFLGLVNYFRKF
FT                 ISGFNILAAPLYDLLKEDREFVLTSDHLKSVEKLKQALISKPVLRIYSPTA
FT                 ETELHTDASSAGYGGVLLQRQTDDGLMHPVMYFSKKTSPTESKLHSFELET
FT                 LAIVYCLQRFRVYLFGLHFKIVTDCNSLKQTLEKRDINPKIARWAMYLEQF
FT                 DFEICHRSGSKMQHADALSRVNVHLIEEENRIESSVFENALYVAQLQDSGV
FT                 TSLKQAVNLGSMKDYEVRDEVLYKRIGNKSLLYVPEQMVPSVINKFHNEMG
FT                 HFGVDKVCNLIKRTYWFPRMREQVQAHTKSCITCIAYNPRNKRYDGVLFNV
FT                 EKPKAPFEVLHIDHLGPLERGKGKNEYILAVVDACTKFIKLYPTKTTKTTE
FT                 VMKSLRNYFHAYSTPKVLISDRGTAFTSLAFNKFTEDHGIRHIKVATACPR
FT                 ANGQIERYNRTMMPLLSKLVEETGNSWDSVITDAEYLLNNTVNRATATTPA
FT                 ILLFGVEQRRRIDYDLTQYLLELNEEADMRELQKIREVASKQNQRQQEYNK
FT                 RMYDKHCRRNTSYSAGDLVMLRRVNVPGERSKLKKKFRGPYMVKKVLDKNR
FT                 YIVGDLDNFQVTRTRFEGVFDPLNMRLYQKAKGKENEGNVLNDEQHQGVEY
FT                 LEDDKERSLMNEEEYQDVEYLEEEDTDVEYEDVEYLEDEYE"
XX
SQ   Sequence 4356 BP; 1353 A; 820 C; 1046 G; 1137 T; 0 other;
     gattcagaag tgggatacca ccggatgtac cggcagtgta tagcggaaga tcggaaacgt        60
     aactccgaat gttttgaggt gcgacgaagg atcttttttc acgatgccag tgacgaggaa       120
     aatggcggcg aaaacgaagc gtgagcagtt ggaagacgag ccgttctacg atgttgcaag       180
     cgatgggatg gacgacgacc agaccgacgg cagcaaagga gacacacaag cgcaattacc       240
     aacacaaacg cacagctttg ctcttcaccc acacgacgtt ggcaaattaa ttccggaata       300
     ttctgaaggt gacggggtgg taaaatggtt acgtcgaatc gatcattttc gtgttctgta       360
     cggttggacg gaacaagtgt gtttgctgta tgcttcaact cgtctgagcg gcgcagcggc       420
     taattggtac agaaggcaag aggagcaaat tttcaactgg ccgcagttca aggatcagct       480
     gatcttggca tttccggaaa cctttgacga agcagacatc catcgacaac tggaagctgt       540
     caagcttgag aagaacgagt catacgaatc gtatgtatat cgtgttgacg ctctggcaca       600
     aaagggtgac ttcagcactt cagcgactct gaagtatatc atcaaaggac tccgctatga       660
     taaagtgttt gcaagtttat tgtcagtgca atacaagtcg acgttggaat tgttacgtca       720
     tatcaagtgg gttgcatcga atttgaacat gattcctcaa acgtcaacac gattcgagaa       780
     aaccgttgct ttcaacgcat ctgaatcagc aagcccttta acctgcttta actgtcgtga       840
     gtctggtcac aaatcaatcg attgtccgaa gcctccacgt aaggaacgat gcggtcggtg       900
     tttgaaggtt ggacacgcga ctgacaagtg ttcggcagcg gcgtatcatc ctaagcagaa       960
     gcaaccattt cagctgggta cgaatgcgac tggacggagc gcaacgaacg cggtattccc      1020
     gagtgatcag agaaatgcag tatcggtgga cgaatcttca caagcgatgg tagaattgga      1080
     tgtcgccgag gaccgcattc gagccttggc cctcgtggac tcaggtagtt atgctagtct      1140
     tataaaatat agtttgttac cccctactat tccaatcaga aatactagag aagagatagt      1200
     cggtataaat agtatcaagg taaatgttgt tggtgagtgg aaaacctttg tttatatcga      1260
     ccacatcaaa tataatgttc ggtttttggt cgtctcagaa gacacaatgc aggtagggtt      1320
     gatattaggt agaagtttcc tcaaagataa tgagattcag tttatacgat ttcaaatgag      1380
     cgatattccc gaatcatctg ataatttgtc gaagctttct gagtggtcca tgtttgagga      1440
     tatgcatttt tcgtataatt tggaagaaga ttatttggat ttggatgtgg gtgataacag      1500
     tgaaacgtat tctttccgac gtaagctcga agatattttg aaagtaagct atttcgatcg      1560
     acagcgcccg gaaactcctt cagtgaagta ccaagcgaaa atacgactaa aggaaaacaa      1620
     aatcttctcg gcaacacctc aaaggctaag tgtatttgaa aagaacgagc tcgataaaat      1680
     tatcgtggat ctgttggaac agggtgtcat acgcgaaagt gattcgccgt atacttctcg      1740
     ggtggtctta acgaagaaga agaacaatag ttatcgtatg tgtgtgaatt acaaaccatt      1800
     gaacagaata gttgagagga atcgctttcc catgcctata atcgaagatc aaattttgaa      1860
     acttcaaggg aagcgatact tttcaacgct ggatctaaaa aatggattct accatgttga      1920
     actaaccgag gaaagtaaac agtacacttc ttttgtcact aacagtgggc aatacgaatt      1980
     taaccgtctg ccatttgggt acgcaaattc tccagcaatt ttcgtaaagt atttatcaaa      2040
     ggtgctcgaa ccttttattc aggacgggag aatagtggtg ttcatagatg acatgatgat      2100
     tgcttcggaa aatgctgaag aacatcttca aacgttaagt gaggttttgg aagttctttc      2160
     agacaaccat ttagagcttc agttttccaa gtgtcggttc ctgaaaaccc atacggaata      2220
     ccttgggtac gacgtgaggt tcaactgtat ccaacctagc gataggcaca ttcaatccat      2280
     ccgtgatttc ccggtcccca ttgatcgaaa aagtcttcaa aggtttctcg gactcgttaa      2340
     ttacttcaga aagtttataa gtgggtttaa tattctggca gctcctttgt atgacttact      2400
     gaaagaagat cgagaatttg tattgacgtc agatcacctc aagtcggtgg aaaagttgaa      2460
     gcaagcactt atttctaaac cagttcttcg aatctattca cctactgcgg agacggagct      2520
     gcatacagat gcttcttcgg cgggatacgg tggtgtactg ctacaacggc agacggacga      2580
     tggattaatg catccggtta tgtatttcag caagaaaacg tcgccaactg agtcgaaact      2640
     acacagtttc gagctagaga ccttggcgat agtatattgt cttcaaagat ttcgtgttta      2700
     cttatttggt ttgcacttta aaattgtgac tgactgcaac tcactgaaac aaacgttgga      2760
     aaaaagggat attaatccta aaatcgctcg ttgggccatg tacctcgaac aatttgattt      2820
     tgaaatctgt catcggtccg gatcaaaaat gcagcatgca gacgctctgt cacgagtgaa      2880
     tgtgcatctc atcgaagagg agaaccgaat tgaatcttcg gttttcgaga atgctcttta      2940
     tgtagctcag ttgcaagatt caggggtaac tagtttgaaa caggctgtga acctgggttc      3000
     tatgaaggat tatgaggttc gagatgaggt tctgtataag agaattggaa acaaatcctt      3060
     gctatatgta ccagagcaaa tggtaccttc agtaatcaat aagttccaca acgaaatggg      3120
     acactttggt gtagataaag tttgtaacct gatcaagagg acttattggt ttccccgaat      3180
     gcgagaacag gtacaagctc atacgaagtc ttgtattaca tgcattgctt acaatccacg      3240
     aaacaaacgc tacgacggag tactgttcaa tgtagagaaa ccaaaagcac cttttgaagt      3300
     tctgcatatt gatcatctcg gtccattgga gagaggaaaa ggaaaaaatg agtacatact      3360
     agctgtagta gatgcctgca cgaaattcat taagctctac cctacaaaga caacaaaaac      3420
     gacagaggtg atgaaatctc ttcggaacta ttttcacgct tattcaacac ctaaggtttt      3480
     gatatcagat aggggaactg cgtttacttc actcgcgttc aataaattta cggaggatca      3540
     tggcattcgt catataaagg tagcgaccgc atgtcctagg gctaacggac agattgagag      3600
     atataatcga acgatgatgc cactactcag caaactcgta gaagagacag gaaatagctg      3660
     ggattcggtc atcaccgatg cagagtactt gctcaacaat actgtcaatc gggcaaccgc      3720
     gaccacccct gccatattgc tattcggagt agagcagcgt aggcgaattg attatgacct      3780
     gacacagtat cttttggaac ttaacgagga agccgatatg cgagaacttc aaaaaattcg      3840
     ggaggtggct tcaaagcaaa accagcgtca gcaggaatac aataagcgga tgtatgataa      3900
     gcactgccga agaaacacaa gctattctgc aggagatttg gtgatgctga gaagagtcaa      3960
     cgtaccggga gagcggagca agttgaaaaa aaaattccga ggaccttaca tggtgaaaaa      4020
     ggttctcgat aaaaaccgat atattgtagg tgatttggac aatttccaag tgactcgtac      4080
     cagatttgag ggggtgtttg atccgttaaa catgcgacta tatcagaaag ctaagggcaa      4140
     agaaaatgaa ggaaatgtat taaacgacga acagcatcaa ggtgtggaat atctagaaga      4200
     tgataaggaa agaagtttga tgaacgaaga agagtatcag gatgtggaat atttggaaga      4260
     agaggataca gatgttgaat atgaagatgt tgaatattta gaggatgaat acgaataatc      4320
     tctttcagat gaatgatgtg tgcaggatgg ccgagc                                4356
//
ID   Gypsy-604_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-604_AA_;
KW   Gypsy-604_AA-I; Gypsy-604_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-216
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 216 BP; 63 A; 33 C; 51 G; 69 T; 0 other;
     tgtaaacttg ccagtggagc gaaatcatat tttgcgttgt ttaaattgag agtgtatggt        60
     caagagtgta gaagtcagtg tagagttgaa cgtaggctca tcattccatc ggtagcttag       120
     gtcagttgta gaaaaagtac gaacacgatc ggtttataaa cacgttgtca accattattc       180
     gaagtgtttt atttgaaatc cggatcctag tcttca                                 216
//
ID   Gypsy-605_AA-I repbase;    DNA;    INV; 5353 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-605_AA_;
KW   Gypsy-605_AA-LTR; Ty3_gypsy_Ele44; Gypsy-605_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5353
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3021-3521] - Reverse transcriptase
CC   Positions [4659-5126] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           639..1793
FT                 /product="Gypsy-605_AA-I_1p"
FT                 /translation="MPDGHDDDSEEDHSNVVAVDKLSENHDELAVARNDSN
FT                 LLSTMSSWTLSTINIPECTPSQGEDEIDKRAYEYWKDTFVSSIKLINVTDE
FT                 LVLFGLFKVKAGSKLREIYQTTVSDPGMSNEISCPFSNAMERLDEYFGSRT
FT                 YILAQRGKLMNMTQTPTETSIQFVRRVGTAAKLCNYTEEEEMEAVVRVMTK
FT                 GAMDARVRVLAHRNWVKQGSMKDLIDLVRDRELERANEEEFQRSHRVEETK
FT                 AIAALSQQPREFPRQTQNYRPNLSENWRFGFRGRHGSNRGRGRGLPNRGFQ
FT                 HNRSYAPTNNCWRCGSVYHQANQCPVIPKVCRNCGIKGHIARVCSEVPGQM
FT                 WQSGPRKRHNVVKEEAISPKIAAIEDVGDRKDEVREIEEVSP"
FT   CDS           2931..5234
FT                 /product="Gypsy-605_AA-I_2p"
FT                 /translation="MPPSRNVYTHIPAVYKDLTKKKLNDLLCAGIIEKVTT
FT                 DMDRSFCSSLLVVPKGKHDIRLVTDLRGPNRCIYRTPFKMPTFESILLELH
FT                 GAQWFSTIDLSSAFFHVELNEDSRHLTNFFAGDQIYRYRRLPFGLCNAPDI
FT                 FQEALQTIVLAGCKGTVNYLDDIMVSGRTKAEHDENLAKVMACLKNHNVKI
FT                 NEEKCVFGKQSVNFIGHTVSSKGWMISDDKIAAIRGFRNPETMCEVKSFLG
FT                 LINFVDRFIHNRADKTQRLRELAKSDHFYWNKDLADEFEYLKNDALNVITK
FT                 LGYFSKDDKTEIYVDASPYGLGAVLVQFDEHSVPRVIGCASKALSETEQRY
FT                 PQTQREALAMVWGIERFSMYLMSLNFTVRTDAESNEYIFGGLHRIGKRAVS
FT                 RAEAWALRLQPYQFDVERVPGKTNVADALSRLVEKSQTAESFDDTNEKHLL
FT                 FLLDSGMLEISLDDIESHARDNEEIIRVKSSIETGFWETGLRRFECQSKEL
FT                 RVFGSLVYRDEQIVLPDTLRQKAIDAAHQGHVGVGSTKRILRDYFWWPRLS
FT                 KDAEARLKQCETCLRLSKKNRPIPLSSRSLPSGPWEILQIDFFTDKSFGTG
FT                 EFLVIVDTYSRYLHVIEMKCMDAETTNAALNKVFLNWGYPLIIQSDNGPPF
FT                 QSSKFVKIWEDKGIKIRKSIPLSPQTNGAVERQNEGIKKALAAAKLDNVNW
FT                 RQALDNYVHVHNKVRPLSRLGVTPFELLVGRKFRGTFPCMWSGASETLDRQ
FT                 DISEKDAMSKLIKQYAD"
XX
SQ   Sequence 5353 BP; 1643 A; 1029 C; 1295 G; 1383 T; 3 other;
     atggcgcagt catccacatc gtgaggtgag ttgaagagaa caatgaagtg tgatagtgcc        60
     acgaatcaaa ttccgatgga aatggacgga atgttgtaat cgaaaaaaaa aatcattttg       120
     ctttgctatc ccgattgaaa taggcggaat agatgtcgat tggtgcttgg tgttcggtgg       180
     aaacagacga atacaattca agcgttaaac gtgtgcgtaa gcctctccgg tggaaataga       240
     cggagagaga tcatattttt wtattccgat ggaaatgggc ggaatacttt ttcaatacag       300
     tggttgaaaa cttccgtgga aaaggacgga gtattttact aaaagtgttc ggtagaaaag       360
     acgagcacga cgagcaaaaa aaaaaatacc tatattcatt tgtcaattgt agtccgattt       420
     tcgtagaaaa cggaacgcat acatttagtg cattgaaact cattttgttt ccacctggac       480
     ctgtgtgata gcattggatt atacggttag actagcttat ttttttttct ctcgaatcta       540
     atttcagaga aacgaaaacc gccatcaaga agcgattgcg tgccgctctt gaagaaaacg       600
     attctttgcg ggcgcgtatt gctcagctcg aagagtcaat gcccgatggt catgacgatg       660
     acagtgaaga ggaccattcc aatgttgtgg ctgttgataa gttgtcagaa aatcacgatg       720
     agcttgcggt tgcaaggaac gattcgaatt tgctgtcaac tatgagcagc tggacattga       780
     gcacgatcaa tatacccgaa tgcaccccat cgcagggaga agacgaaatc gataaacgtg       840
     cctacgaata ctggaaggac acatttgttt cttccattaa gctgataaat gttactgatg       900
     aactcgtatt gttcgggctt ttcaaagtta aggcgggatc gaagttgcga gaaatttacc       960
     aaacaacggt gtcagaccca gggatgtcca atgaaatctc gtgtcctttc tcgaatgcta      1020
     tggagcgtct ggacgaatat tttggttctc ggacatacat ccttgcccag agaggcaaac      1080
     taatgaatat gactcaaaca cctacagaaa ccagcattca gttcgtaagg cgtgtgggaa      1140
     ccgcagccaa attgtgtaat tacaccgagg aagaagaaat ggaggccgtt gtacgagtta      1200
     tgacaaaggg cgcgatggat gctagggtcc gagttcttgc tcaccgaaat tgggttaaac      1260
     agggatcgat gaaggacctc atcgatctcg taagagatag agaactcgaa agagcaaatg      1320
     aggaagaatt ccagcggagt cacagagtcg aggaaacgaa agcgattgca gctctttcac      1380
     aacaacctcg agaatttccc agacagacgc agaactatcg cccaaaccta tctgaaaact      1440
     ggcgcttcgg attcagaggt cgacatggat caaaccgagg acggggtcga ggattaccaa      1500
     atcgaggatt tcagcacaat cgatcctatg cccctaccaa taactgttgg cgttgcggca      1560
     gtgtttacca tcaggctaac cagtgtccgg tgattccaaa agtttgccgc aactgtggwa      1620
     ttaaggggca tattgcgcga gtttgttcgg aagtgccagg tcagatgtgg cagtcaggac      1680
     ctcgtaagcg tcacaacgtt gtcaaagagg aggcgatcag tcccaagatc gcagctatcg      1740
     aggatgtagg agataggaaa gatgaggtac gagaaattga agaagtttct ccttgattga      1800
     tttttwttgc tgtttttttt tctttgggaa aatttgaagt aaataaatga actgttgatt      1860
     ttttttttgt actgattaca gagaaaacag attattgcat ctgaaatgga aatcgctcaa      1920
     caaacttcaa aatccgccga aaaaaccata caatttgata atttccttcc gaagcagtcg      1980
     tcccacgata ttcagagaat cgttaccgaa agcatcgctt acattgatac tcatgtggcg      2040
     aaaacacccg tgaaattttt cattgattca ggagcgcagg tcaacaccat cataaagaag      2100
     gattttgaga gaattctagc taatactgac ggcagagata acattctggc gttggaatat      2160
     tctacggaca agcgtcttaa agcgtacgct tctgataatg aaatcaaggt gattgctaac      2220
     ttttcggctg aactagttat ctctgaagac agaccagtat cgattgaaaa attttatgtc      2280
     gtggatgaaa tacgatcact tttgggattt aatacggccc ttagatacag tgttctcgaa      2340
     gtggggttgg atgttgcagt taatgctctt cgcgcgaact cctcttggaa gtgtgagctc      2400
     gacaacgatt tgtgctgtcg tgctgtcacg tgcttgatca gcaaaaggag ttcccgaaat      2460
     ttaacataac tccggtatca ttgagatacg ataagaccat gccgccctca cgtaatgttt      2520
     acacacacat accggcggtg tacaaagatc tcactaagaa gaagttgaac gacctgctgt      2580
     gtgccggaat aattgagaag gtgacgaccg atatggatcg atcgttttgt tcatcgctac      2640
     tagttgttcc caaaggaaaa cacgatattc gtttagtgac cgacctccgg ggacctaacc      2700
     ggtgtattta tcgaacacca tttaagatgc cgactttcga gtcaattcta ctggagcttc      2760
     atggagcaca gtggttttca actattgatc tgtcaagtgc ttttttccat gtggagctta      2820
     atgaagattc gcgccatctc accaattttt ttgctggtga tcaaatttat cgataccgac      2880
     gtcttccatt cggcctgtgc aatgcaccgg acatctttca ggaggcttta caaactatcg      2940
     tattggccgg gtgcaaagga accgttaatt atttggacga tattatggtc tccggaagaa      3000
     ctaaggcaga acatgatgaa aacctcgcaa aggttatggc atgcttgaaa aatcataatg      3060
     tcaagattaa cgaagagaaa tgcgttttcg gtaaacagtc cgtgaatttc ataggacaca      3120
     cggtttcatc caaaggatgg atgatttctg atgacaaaat tgcagccata agaggatttc      3180
     gaaatccaga aacgatgtgc gaagtgaaaa gttttttggg actcataaac tttgtggatc      3240
     gtttcattca caatcgagcg gataaaactc aaaggctccg agaactggca aaatcagacc      3300
     atttttattg gaataaggat ctcgcggatg aatttgaata tctaaaaaac gatgcactga      3360
     acgtgattac caagttggga tatttcagca aggacgacaa aacggaaata tatgtggacg      3420
     cttctccgta tggcttgggt gcagttcttg tgcagttcga tgaacattca gtgcctaggg      3480
     tgattggatg tgcttccaaa gcattatcgg agacagagca aagatatcct cagacacaac      3540
     gagaggcatt ggctatggtt tggggaatcg agcgtttctc tatgtacttg atgagtttaa      3600
     acttcacagt aagaacagat gcagagtcta atgagtacat tttcggagga ttgcaccgta      3660
     ttggcaaaag agcggtatcg agagcagaag cttgggctct gagactccag ccataccaat      3720
     ttgacgttga acgtgttccg ggaaaaacga acgtggccga tgcactctcc agactggttg      3780
     aaaaatctca gacagcggaa tccttcgatg atacgaacga aaaacattta ctgttcctgc      3840
     tggattcagg aatgctggaa atctcattgg acgatattga atctcacgca cgagataacg      3900
     aggaaataat tcgagttaaa agctccatcg aaactggttt ttgggaaact ggtttgcgac      3960
     gtttcgaatg tcaatcaaaa gagctacgtg tctttggatc attggtatac agagatgaac      4020
     agattgtact cccagacact cttcgacaaa aagcaattga tgctgctcat caagggcatg      4080
     ttggagtagg ttccacaaaa agaattctgc gagattactt ttggtggcca cggctgagca      4140
     aagacgcaga ggctcgtcta aaacaatgcg aaacgtgtct tagattgtct aagaagaatc      4200
     gacccatacc tctgagcagt aggagtcttc caagcggccc gtgggaaata ctgcaaatag      4260
     attttttcac ggataaaagt tttggaactg gagagttcct agtgatagta gatacgtatt      4320
     cacgctacct tcacgttatt gaaatgaaat gtatggatgc agagactacc aacgcagcac      4380
     tcaacaaagt tttcttgaat tggggatacc ccttaattat acaaagtgac aacggccccc      4440
     cattccaaag ctccaaattt gttaagatat gggaggataa aggaattaaa attcgaaagt      4500
     caattcccct gagtccacag accaacggcg ctgttgagag gcaaaacgaa ggcattaaaa      4560
     aggcgttagc ggcggccaaa ctagacaacg tgaactggag acaggccctt gacaactacg      4620
     tacacgtgca caacaaagta agacctcttt caaggctggg cgtaaccccc ttcgagcttt      4680
     tggtaggaag gaagttcaga ggcacgtttc cgtgtatgtg gtcgggcgca tccgaaacac      4740
     tcgatcggca ggatattagc gaaaaagatg ctatgtcaaa gttaattaag caatatgcag      4800
     actaaagagc aaatcttcag atttaatcgt gggagacaga gtgtttttaa ctcagttgaa      4860
     gcgatacaaa tccgacccaa actttggcgg cgagaggttt acagttgtag ccagagatgg      4920
     agcaaagata gtggtacgca gcgatcgagg aatacttttc gccagaaatg tagcagacgc      4980
     gaagagaatc gaggatatca tggatggtac aaatgtcgac gatgattcac gttcggaaaa      5040
     caatacggca tttggtaagt aaaaaaaaga agaagaaacg ttttgagcgg ttttgggtag      5100
     ttctttatcc tcaatttttt tttttaattt tctgcagact tgcttcacaa agagcatcag      5160
     gagatggaaa acgtgagtga tcggcgttca gagggaacat cggaagtgcc cgaagaaggt      5220
     agcctgctcc aggatcaatg taaacccgat gaagtttcat gcggaagacc caagcgtaat      5280
     tatcgaaaac cgagaaaatt tgatgatatg gttctgtata cgattttcga ataagtgtag      5340
     aggtgggaag aca                                                         5353
//
ID   Gypsy-605_AA-LTR repbase;    DNA;    INV; 462 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-605_AA_;
KW   Ty3_gypsy_Ele44; Gypsy-605_AA-I; Gypsy-605_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-462
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 462 BP; 157 A; 101 C; 95 G; 108 T; 1 other;
     tgtagaaaga gaggaataaa tataaattat agttgacact aattacacac cttcattaag        60
     aaaaacacga aactgaaaat atttcagaat gaaagaaatt gccgatacat taagtgataa       120
     tctattccta agttgattgc atcatctttc tccaccaacg ttgtgaaaat tcccacatgt       180
     ttgcttgtct gccattcgtt aaattcattg cccaatagca tgcttgttat gcaaaaggtc       240
     tgccatttgt cgaactcagc aaccaatagg aagcgaaaac ggattccacg cgaatataaa       300
     tamgggcgaa ctttgagcag aggctcattc ttgaaacgga tttctcgagc gacacatcgc       360
     cttccgctag cagcagccgc agcaccgact acccgcagca gacactatcc gagcagcagc       420
     cgatgagaga aatggagaac gtggagaggg aagacgacga ca                          462
//
ID   Gypsy-606_AA-I repbase;    DNA;    INV; 4033 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-606_AA_;
KW   Gypsy-606_AA-LTR; Ty3_gypsy_Ele7; Gypsy-606_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4033
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3089-3601] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1487..4003
FT                 /product="Gypsy-606_AA-I_1p"
FT                 /translation="MAARTEFENLMKLGICRPSSSSWASPLHMVKKADGTW
FT                 RPCGDYRALNAQTVPDRYPLPYLQDFTSILHGKSIFSKIDLQKAFHQVPIH
FT                 PEDIPKTAITTPFGLFEFTQMTFGLRNAAQTFQRLIHEVVRELDFVYPYID
FT                 DIFIASSSPEEHRDHLRQLFKRLEEHNLAINVAKCEFGKTELTFVGHSVSP
FT                 DGISPLPDRVEAVRNFRRPTTVKELKSFLAVINFYRRFIPNAVVAQIPLLD
FT                 MTSGNKRNDRSLLEWTDSTVSAFEQCKLQLANAALLAHPARNAELSLWVDA
FT                 SNTAAGAVLHQVINGHVQPLGFFSKRFDKAQLRYSTYDRELTAMYLAVRHF
FT                 KYMLEGRNCHIYTDHKPIVFAFQQNLEKASDRQARQLDYIGQITTDIRHVA
FT                 GKENFTADLLSRILAVHAIPTVDFHALATDQETDDELTTILEGKLKTSLNL
FT                 KKFTMPGTAKQLYCDSSGDRIRPFITKRFRDQFLQATHNLSHPGTRATAKL
FT                 MTQRFVWPSIRKDSIAYAKQCEQCQRSKVTRHTHSPLERYSVPDERFCHIN
FT                 IDIVGPFPPSNGNRYCLTIVDRFSRWPEAIPVPDMTAPTIAQALVTGWISR
FT                 FGVPKRITSDQGRQFESTLFAELLRTFGITHLRTTPYHPQSNGIIERWHRT
FT                 LKAALLCHNADRWTEHLPMILLGLRTIHKEDIRASPAEMVYGTTLRIPCEF
FT                 FGENSRNITTSEFANTLRDAMRKIHPPNTAWHNRGKVFVHPDLRSCKNVFV
FT                 RNDSIRPSLSPPYDGPYPVLCRSDKHFKLNINGRSVNISIDRLKPAYTIEE
FT                 QQQPQPPSNRSTSTTSLDQPTTVTRSGRRVRIPHRFR"
XX
SQ   Sequence 4033 BP; 1142 A; 1028 C; 865 G; 996 T; 2 other;
     tagttggtga ccccgtgtgc gcgaaatgga agacgataaa acattacctg tgcaacccgg        60
     aaccagcggt atgctgcagc ttgaaaccgc caatgtggac acaattaaca tgccacgact       120
     aaatccgccg gtgatgtcag cttccaacat cgactcttac tttctgtctt tggagttctg       180
     gtttgccgcc tcaggactgg gcaatcaaca cgatactaag aagtacaata tcgtcatggc       240
     tcaggtgcca ccggaaaagt tgacggagct acgatccatt atagatgcca caccggcttc       300
     tgagaagtat ccgtacgtga agaagaagct tattgagcat tttgcagaca gccagcaaaa       360
     acgtctacag cgagtgcttt ccgatatgcc tctcggtgat atgaaaccca gccagttata       420
     cagtgaaatg atgcgtgtgg ccggtaactc gttgggtgaa cccgtgcttc tcgacctgtg       480
     gacttccaga cttccaccgc atgctcaagc agctgtaatt gcgtctaaag gtgatgcaag       540
     cgaaaaaaca aacatcgccg acgcaatcat cgacgcaatg ggattccgta acattcacgc       600
     catcgttaca ccttcgtctt cagcgccaat agctggaacg gaaaagccag ccgtgagcag       660
     tattgaagat ctgcaacggg aaatcgccca actaactaaa aggttcgagc aagtgtttca       720
     atccagaaga agcggaagag atcgatctcg ttctcgtagc agaagcagac cagacctacg       780
     gtacggttct gaatcttcgt acgatatgtg ctggtatcat cgtacttttg gagcaaatgc       840
     acgccaatgt cgaaaaccgt gctcattcga tcagccatca aaatccaatc aacaatgacg       900
     ccaaatggct gattctgcgt tggaaaacgg cgaattatct tcctcagcaa ccatttttcg       960
     cctgaaaatt gcagacacga ttacaaacag gagcttcctc atcgacacgg gagctgatgt      1020
     gtctgtaata ccaaaagatt ctaatttagt tcgtgtcaaa ccaactacaa taagattgtt      1080
     cgccgcaaat ggaaccccaa tcaaagtwta tggagaagca ctactaaaag tcagccttgg      1140
     gcttcgtcga gaatttctat ggagcttcct catagctgat gtgacaacag gcataatcgg      1200
     cgcagatttc gttagccatt atgatttgtt gatagatctg aagcgacatc gcctcatcga      1260
     caatactaca aaactcgaaa caatggcagt gctgacacca acgagacatt tctccatcaa      1320
     aacgtttagc aaawcatcac catttgcgga actgctgaac gattttccat ctatcacaca      1380
     gctagcaccg cctggcacag taagtaaatc ctctatagtt catcgtatcg aaactactgg      1440
     ccagcctact tttgctcgac caagacgact tgctcctgat aaacttatgg ctgcacgtac      1500
     tgagttcgaa aacttgatga agttgggaat ctgtcggcca tcgtcaagta gttgggccag      1560
     tcctctgcac atggtgaaga aggcggacgg tacttggcgg ccctgtggag attaccgtgc      1620
     actcaacgct caaactgttc ctgatagata tcctcttcct tacctgcagg atttcaccag      1680
     tattctgcat ggaaaaagta tcttctcaaa aattgatctt caaaaggcat tccatcaggt      1740
     gcccatacac cctgaagaca tcccgaagac tgcaatcacc actccgtttg gattattcga      1800
     gttcacccag atgacgttcg gcctgcgaaa cgctgctcaa accttccagc gactaatcca      1860
     cgaggtggta cgcgaactgg atttcgtgta cccatacatc gatgacatct ttattgcttc      1920
     atcgtcgcca gaagagcatc gagatcatct tcgacaattg ttcaagcgac tggaagagca      1980
     caacctagcg atcaacgtag caaagtgtga gtttggaaag actgaattaa ctttcgtcgg      2040
     tcactcagtt tctcctgacg gaataagccc gctgcccgac cgtgtcgaag cagtacgcaa      2100
     ttttcgacgt ccaactacag tgaaggagct caaaagtttt ctcgctgtta tcaatttcta      2160
     cagaaggttc atcccgaatg ccgtagtggc acaaatacca ttactcgaca tgacctctgg      2220
     aaataaacgc aacgatcgat ctctactaga gtggacggat tcgactgtgt cggcatttga      2280
     acaatgcaaa ctacaactag caaatgctgc tctactcgct caccctgcta gaaatgccga      2340
     gttgtctttg tgggtggacg catccaatac agctgccgga gctgtactac atcaagtcat      2400
     taacggtcat gttcaaccac tcggtttctt ctccaaaagg ttcgacaagg cacaactgag      2460
     atacagtacg tatgaccgag agttaacggc aatgtatcta gcagtacggc acttcaaata      2520
     tatgttagag ggacgaaatt gtcacatata caccgatcat aagccgatcg tgttcgcttt      2580
     ccaacaaaat cttgaaaaag cttcggatcg tcaagcacga cagttggact acatcggtca      2640
     aatcactacc gatatccgtc atgtagcagg taaagagaat ttcaccgcag atttgctctc      2700
     tcgcattctt gctgtccatg ccatcccgac ggttgacttt catgcactcg ctaccgatca      2760
     agagaccgac gacgagttga caacaatact ggaaggtaaa ttgaaaacat cgttgaatct      2820
     caaaaaattc actatgccgg ggactgcaaa gcaattgtac tgtgatagtt ctggagatcg      2880
     catcagacct tttataacaa aaaggttccg agaccaattt cttcaagcaa cccacaatct      2940
     ctcacatcca ggtactcgcg cgacggccaa gctgatgact caaagattcg tttggccaag      3000
     tatacggaaa gatagcattg cctacgcaaa gcaatgtgaa caatgtcagc gttccaaagt      3060
     gactcgtcac acacattcac cacttgaacg atattcagtg cctgacgaaa ggttttgtca      3120
     tatcaatatt gacattgttg gaccctttcc gccgagtaat gggaatcgtt attgcctcac      3180
     catcgttgat aggttttccc gttggccaga ggcgatacct gttcctgata tgactgcacc      3240
     taccatcgca caagctttag tgactgggtg gatttctcgc tttggcgtac ccaaacgaat      3300
     cacatctgat caaggacgtc agttcgaatc gactctcttt gctgaattgc tacgtacgtt      3360
     tgggatcact cacctccgta caacaccata tcatccccaa tctaatggta tcatcgagag      3420
     atggcaccga acgctcaaag ccgctcttct ctgccacaac gctgatcgct ggaccgagca      3480
     cctcccgatg atcttgcttg gtttgagaac catccacaaa gaagatatca gagcttcgcc      3540
     ggctgaaatg gtttatggaa cgacgcttcg gattccttgt gagttctttg gtgaaaactc      3600
     tcgcaatatc acgacatccg agttcgccaa cactctgcga gatgctatgc gaaagataca      3660
     tccacccaat acggcatggc ataatagagg taaagtgttt gttcatcccg acctcaggtc      3720
     gtgcaagaat gttttcgtcc gcaacgattc gattagacca tcactatcac caccatatga      3780
     tggcccttat ccagtgctct gccgatccga taagcacttc aagctaaaca tcaatggtcg      3840
     gtctgtgaat atttcgatag atcgactgaa acctgcctac acgatcgagg agcaacagca      3900
     accacaacct ccctctaatc gttcgacatc aacaacttcg ctcgatcaac cgacaacagt      3960
     aactcgttct gggagacgag tcagaattcc gcaccgattt cgttgactgt cgtctgttct      4020
     agaaggaggg taa                                                         4033
//
ID   Gypsy-606_AA-LTR repbase;    DNA;    INV; 285 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-606_AA_;
KW   Ty3_gypsy_Ele7; Gypsy-606_AA-I; Gypsy-606_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-285
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 285 BP; 94 A; 62 C; 43 G; 86 T; 0 other;
     tgtagcatca tcaacactac aagtagcgca tcccttgcaa catcttccat gcaacacttt        60
     gcgatttact cgcaaggcac attgagacaa gcagcctgat cacaaaatgt attcacttgc       120
     attacaactc tattgaacta ttcaaatatg gaactatgat gtattcaaat ctagaatgta       180
     ttgtttcttg aactatataa gggaaaatcc ccaaccaaat agattagttt ttatctagaa       240
     ttagaacacg ctgttttact cgttagaatc cgtgaagtcg tccca                       285
//
ID   Gypsy-607_AA-I repbase;    DNA;    INV; 5993 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-607_AA_;
KW   Gypsy-607_AA-LTR; Gypsy-607_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5993
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3196-3762] - Reverse transcriptase
CC   Positions [5074-5553] - Integrase core
CC   'AAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           933..2288
FT                 /product="Gypsy-607_AA-I_3p"
FT                 /translation="MNRLRDIEEETKREHQNLKKSINRARTLQGILQKSEK
FT                 LKDFRNEYKTILKSYEYRLTPKVWDLEVTNYEKLKLIFEECHTILDRSKIL
FT                 PTFKAIAKAAIICNRLSLKNQEVNVTVTTTTMPLDIKLATAIVQPYDGSPN
FT                 GLDTFIDSANLLKESVDGTNLQTAIKFLRTRLTGKARLGLPDNLTTIDALI
FT                 DNVKSRCEEIVTPESVLAKLKTIKQKGDIDSLCNDVDSLCSQLRATYIASG
FT                 VPDNVAKKMATKAGVDALATGVTNHETRIILKAGNFTDVKQAIQKVAENAN
FT                 SNTNNSQILNFHTNRQFNRNRSVTNRSRGNYNYNGNYNYNDNYNSNYNNNY
FT                 NNNRREFRNNDFRRQQPQERENFGRNYQRGNGSSHHPQNVQSNRNYHGRGG
FT                 HNSFRRIYATNIETDQNQPQMQQQFTNSAQIPQSQPVTNNNSFLGNLASQA
FT                 NLGQYMH"
FT   CDS           join(3172..4077,4081..5904)
FT                 /product="Gypsy-607_AA-I_1p"
FT                 /translation="MEAQVQKMLDDEIIEPSISSYNSPILLVPKKSDNDTK
FT                 KWRLVVDFRQLNKKVLADKFPLPRIDAILDQLGRAKYFSTLDLMAGFHQIT
FT                 LDEDSRKYTAFSSASGHFQFTRLPFGLNISPNSFQRMMNIAMAGLTPECAF
FT                 VYIDDIVVVGCSVDHHFDNLRKIFERLRHYNLKLNPNKCNFFRTEVTYLGH
FT                 KITGNGILPDDSKFEAVKNFPTPTNADEVRRFVAFCNYYRKFVPNFANIAK
FT                 PLNDLLRKDTKFEWTSVRHEAFNKLKKYLMSPQILRYPDFTKEFIVTTDAS
FT                 DVACGAILSQYEEGDLPVAYASKSFTKGERNKPIIEKELTAIHWAIDYFRP
FT                 YLYGRRFKVRTDHRPLVYLFNMKKPTSKLTRMRLDLEEFEFDIEFVPGKAN
FT                 VGADALSRIVLNSEELKQLSILFVNTRSMAKKQNLGQDKVTPQKLVEPHLQ
FT                 TDHLVVRETENPSEVQKLLKLDCVVHHNQLTIILLNHNSRKILKQFTTKFT
FT                 RDNGSQALEFALLELMKYMKFYKRDKLALSMENEIFKFISLHTLKEIANNA
FT                 ISTYEIILYKPPTFIENEEEIIKILSQYHMTPTGGHVGQHRLYLKLREIYK
FT                 FKNMKNLISNFVRNCEKCKINKVTRHTKEPEVVTTTPSKPFEVLSVDTAGP
FT                 LTRTNNGNRYILTIQCNLTKYVVLVPVPTKEAAVLARALVYNFILIYGTFL
FT                 ELRTDQGSEYNNEILERICKLLEIKQNFSTAYHPQSIGALERNHRCLNEYL
FT                 RCFTNAHQTDWDDWVKFYEFSFNTTPHTEHGYTPYELIFGRKARLPQESKN
FT                 LSLEVEPMYNFEQYDAELKFRLQNSNKIARNNLIKNKHKRQNTANTNVNPI
FT                 ALNAGDKVYITNENRKKLDPFYIGPYEIVKLEEPNCFIKHTVTNKVTKVHK
FT                 NRLIKA"
XX
SQ   Sequence 5993 BP; 2304 A; 1202 C; 1025 G; 1453 T; 9 other;
     aatggcgacc tgtgacttga gcctcttctc aacacagctc gaggaatagt gaagtgaagt        60
     gaaaatcacg actttgaaca attatcgtcg caacaataaa ctcccaactc cagtgatttg       120
     tgtgcaaaga aagtcaaaca caatgggatg gttcacgtcg gataatttca tttcgaacac       180
     cgtcgaaata ccgacaacag aaatccgaat tatggtcggt gttgccatta ccatcagtgt       240
     cgtgcttgtt ggatacctga tcctacgtct atacaacaaa tatcagaaga aatcgttaca       300
     aaacactatg caacaagaaa tccgcatgaa caatatggaa acgaagtggc aggctaaagt       360
     ttaaagtgac caaacccgta aaatacgcaa atgttcgaaa tagtgtgtgg aatgagtggc       420
     tgctggccaa tttctgcaac gacgacaacg acgacaacgg cgataccaac aacatcgtgg       480
     agcagcacct cgatcgaaac gaccacagtg cacgaaattg aatcgaacat taacagtgag       540
     cttgtgctaa cggtaataat agtgatagca ctagcttgtt tagcaattgc gctagtatac       600
     tatgacagac aaagaagaaa gaagcaaagt gcgaacagga aattaatgca gatcatcatc       660
     gcgacagcgc atcgatcgat tatcgcagat gtcacaaacg agcagcagaa cgagcaataa       720
     gcaaaccaga cgagacaaac agaaacaggc atgttttaac cagctagcag aggaatgagc       780
     aatgagcaac ccggatgaga ctggcagaaa acggtatgtt ttattaaacg gattgaataa       840
     ctattagtat tataacaaaa aaaaaaaaaa cgacaataat aattattgca aactagccta       900
     acgagaaact cagtaaatta aaagcctctt gaatgaatag gttaagagat attgaagaag       960
     aaacaaagag ggaacaccaa aacctaaaga aaagtattaa cagggctaga actctccaag      1020
     gaatcttaca aaaatccgaa aaattaaaag attttcgtaa cgagtacaaa accattttaa      1080
     agtcatacga atatagacta acaccaaaag tttgggacct cgaagtaaca aactacgaga      1140
     aactaaagtt aatatttgag gaatgtcaca caattctaga cagatccaaa atactaccaa      1200
     catttaaggc aatagccaaa gcagcaatta tttgcaatcg attgagcctc aaaaatcaag      1260
     aagttaacgt aacggttact accaccacca tgcctctcga tatcaaattg gctaccgcca      1320
     ttgtacagcc gtatgatggt tcgcccaatg gactagatac attcatagac tcggccaatc      1380
     tattaaaaga atcggtcgac ggaacaaatt tacaaacagc aataaaattt ttacgtacca      1440
     gactaactgg caaggcaaga ctaggtctgc ctgacaatct tacaaccatc gatgctttaa      1500
     ttgacaacgt aaagtcaagg tgcgaagaaa tagtaacacc tgaaagtgtt ttggcaaaac      1560
     taaaaacaat aaaacaaaaa ggggatatcg acagtctttg taatgatgtc gattccctct      1620
     gcagtcaact ccgtgcgact tacatagcaa gcggagttcc cgacaacgta gcaaagaaaa      1680
     tggctacaaa agcaggcgta gatgcactcg caaccggagt aaccaaccac gagaccagaa      1740
     ttattttaaa agccggaaat ttcacagacg tgaaacaggc aatacagaaa gttgctgaaa      1800
     atgcaaacag caacactaac aactcccaaa tattaaactt tcataccaat cggcagttca      1860
     ataggaaccg gagtgtcact aatcggagcc gaggtaatta caattataac ggcaattaca      1920
     attataatga taattacaat tctaactaca acaataatta caacaataac agacgtgaat      1980
     ttcgaaataa cgattttaga cgccaacaac ctcaagaaag ggaaaatttt ggcagaaatt      2040
     atcaaagagg taatggatcc tcacatcacc cacaaaacgt acaatccaat cgcaattatc      2100
     acggcagagg cggacataac tccttccgtc ggatatacgc cacaaacata gaaacagatc      2160
     aaaatcaacc acaaatgcaa caacaattta caaattctgc acaaatcccg caatctcaac      2220
     ctgtaacaaa caacaactct tttttaggga atttggcatc ccaagccaat ctgggacaat      2280
     atatgcacta aatctaagcg cagcaaattt cgtcaacgta tttgttggca tgaccaattc      2340
     aacatgttca tttatagtcg atactggagc agatatatca atcatgaaag tagacaaact      2400
     cctaccacac caaatagtgg acagaagcaa aaactatcga ataaccggaa ttaccgatgg      2460
     cgtaaaagag acattagccg aagccattac gcccctaaaa ttcaataatg gattaatagt      2520
     taaccacaat ttccagttag tagaaccgac ttccccattc caaccgatgg matactcgga      2580
     cgtgatttcc tgacaacatt taagtgtacc attgactacg agcattggct gctaaatttc      2640
     aaatttcaac aatcggaaat atcgattccc attgaagaca actacaacgg aaanatactt      2700
     ataccagcaa ggtgcgaagt agtacgaaaa attccaaacc tcaatgtcaa agaggacacc      2760
     ktagtgcatt cacaagagat acttcccggt gttttctgtg gaaacactat agtctcccaa      2820
     aattcaccat gtgtaaaatt cattaatact actgagaaas aagtactaat acaaaatttt      2880
     aaaccaaaaa ttgaaccgtt aaatcattat gtgaccgtta aacacaatca tttgagtaaa      2940
     acgcagaact cagatagagt acaggaagtt atctcacaaa taaatttcga taaagtacca      3000
     caatttgcaa ggaaaaatct ccaagcgctc atcacagaat tccaagacat attcagtcta      3060
     cccgatgaaa aactacccac gaacaatttt tacagccaaa gtatacatgt taacgataaa      3120
     atccctgtgt atatcccmaa ctacaaaaat atacactcac aaaatggcga aatggaagcc      3180
     caagttcaga aaatgttgga tgatgaaata atagaaccat ctatttcatc ttacaactct      3240
     ccaattttat tagttccgaa gaaatcggac aatgatacaa aaaagtggag acttgttgtc      3300
     gatttccgac agttgaacaa aaaagtctta gcagataaat ttccacttcc acgtattgac      3360
     gcaatacttg accaattggg aagagccaag tatttcagta cactagattt gatggcgggt      3420
     tttcatcaaa taacactaga tgaagactct cgcaaatata cagccttttc atcagcatcc      3480
     ggacatttcc aatttacaag gttaccgttt ggactgaata ttagtccaaa tagcttccaa      3540
     cggatgatga acatagcaat ggcaggctta acgccagaat gcgcatttgt atacattgac      3600
     gacattgttg tcgtaggatg ttctgtcgat caccattttg acaatttgag aaaaatattc      3660
     gaacgattga ggcattacaa cctcaagctg aaccckaaca aatgcaattt tttccgaacg      3720
     gaagtgacat atctaggtca caaaataaca ggcaatggca ttctaccaga cgattccaaa      3780
     ttcgaagccg tgaaaaactt tcccacgcct acgaatgcag acgaagttcg tcgatttgta      3840
     gctttctgca attattaccg maaattcgtc ccgaattttg caaacatagc aaaaccactg      3900
     aacgatctgt tacgaaaaga cacaaaattt gaatggactt cagtacgcca cgaagckttc      3960
     aataaactaa aaaagtatct aatgtcaccc caaatattac gatacccgga tttcactaaa      4020
     gaattcatag tgaccaccga tgcttcagac gtggcgtgcg gagcaatcct ctcgcaaags      4080
     tacgaagaag gagacttacc cgtagcgtac gccagtaaaa gttttacaaa aggcgaaaga      4140
     aataaaccaa ttatagaaaa agaattaacc gccattcatt gggcaatcga ttactttaga      4200
     ccttatttat atggacgaag atttaaggtc cgtacagacc atcgtccatt ggtttattta      4260
     tttaatatga aaaaacctac atctaagctg actagaatgc gattagattt ggaggaattt      4320
     gaattcgata tagaattcgt tcctggaaaa gcaaacgtgg gtgcagatgc actttcacga      4380
     attgtcctaa actccgaaga acttaagcaa ctatccattt tatttgtaaa tactagatcc      4440
     atggctaaga aacaaaattt agggcaagat aaagtgacac ctcaaaaatt agtggaacca      4500
     catttacaga ctgatcacct ggttgtgcgt gaaactgaaa atccttctga ggtccagaaa      4560
     cttttaaaac ttgattgtgt agtgcaccat aatcaattaa cgataatatt attaaatcat      4620
     aacagcagaa agatactcaa gcaatttaca acaaaattta cgcgcgataa tggaagtcaa      4680
     gccttagagt ttgctcttct agaattaatg aaatatatga aattttacaa aagagacaag      4740
     cttgcattgt caatggaaaa cgaaatcttc aaattcatct ctttacatac actaaaggaa      4800
     atcgcaaaca atgccatttc cacgtatgag ataattcttt ataaacctcc gacgtttata      4860
     gagaacgaag aagaaattat taaaatctta tcacagtatc acatgacacc tacgggaggt      4920
     catgtaggcc aacacaggct ctatttaaaa ctaagagaaa tttacaaatt taaaaacatg      4980
     aaaaatttaa tatccaattt cgtcagaaat tgcgaaaaat gcaaaatcaa caaagtaaca      5040
     agacacacca aggaaccaga agttgtcact acaactccat ctaaaccatt tgaagtactt      5100
     tcagtggaca ctgcaggacc actgacaaga acaaataatg gtaaccgata tattttaaca      5160
     atacaatgca atctaaccaa gtacgttgtg ctagtaccgg taccaaccaa agaagcagca      5220
     gtattagcta gagcattggt atacaatttt attttgattt atgggacatt cttggagctc      5280
     agaaccgatc aaggatcaga atataacaac gagattcttg aacggatttg taaactccta      5340
     gaaataaaac aaaatttttc caccgcatat cacccacagt ctattggagc attagaaaga      5400
     aatcacagat gtttaaacga atatctgaga tgttttacta acgctcacca aacagactgg      5460
     gatgattggg tcaaattcta tgaattttca tttaatacaa cacctcacac agaacatggt      5520
     tatactcctt atgaattaat ttttggaaga aaggcaagat taccgcaaga gtctaaaaac      5580
     ttaagtttag aagtcgaacc aatgtataac ttcgaacaat atgatgcaga actaaaattt      5640
     agacttcaaa attcaaacaa aatagcaaga aacaatttaa ttaaaaataa acacaaaagg      5700
     caaaatacag caaatacaaa cgtaaacccc atcgcattaa atgcaggaga taaagtatac      5760
     atcacaaacg aaaacaggaa gaagctagat cccttttata taggtccata cgaaattgta      5820
     aaattagaag agccaaattg cttcatcaaa catactgtaa cgaataaagt caccaaagtc      5880
     cataaaaata gattaataaa agcttaaaag ctagttaaat acttttaccg atacattaag      5940
     actaatattt tcttttttcc gaatggttac accattctcc taaagggggg agg             5993
//
ID   Gypsy-607_AA-LTR repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-607_AA_;
KW   Gypsy-607_AA-I; Ty3_gypsy_Ele57; Gypsy-607_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-423
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 423 BP; 158 A; 99 C; 60 G; 106 T; 0 other;
     tgtagtatac caagtagagt aataaatact gtttagcatc aataaatact gattagtttt        60
     agcaagcact aattacctcg tttaggtcag taatttccaa gccatcagca acaaaccatt       120
     tttttgcaaa ctaccaaaaa ccccgaccgc cataaaccgc ttgtttatga cagcctcaag       180
     aaaaaaccca aaccatccat ccaatgccaa gagctacccg ctcttgagca ccgttattta       240
     taaacacaaa caatacacaa taaacagtta cctgaacaaa tgtaatctag tatttaagac       300
     cttaggtaaa taaacgaaga cacagtctag tgacctgaac ccttggagtg tggacacgct       360
     gtccaacgta tttaaatacg agtatcacaa tcctcgacaa tcagaaaaat caattgtgta       420
     cca                                                                     423
//
ID   Gypsy-608_AA-I repbase;    DNA;    INV; 6037 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-608_AA_;
KW   Gypsy-608_AA-LTR; Ty3_gypsy_Ele137; Gypsy-608_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6037
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5092-5580] - Integrase core
CC   'ACAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1397..2323
FT                 /product="Gypsy-608_AA-I_2p"
FT                 /translation="MSAIELIRTIPLLIPTYQGDGEKLTSTVAALKACKSL
FT                 IDNTNQAIALQVILSRLEGKARAAVGDAPQNIDEIIAKLEEKCKIKIAPET
FT                 VVAKLNATKQVGEIGKFTETIEKLTLDLERAYISENVPVDAATRMSVKAGV
FT                 KALAAGVKNSETRLLLKAGQFSTLTAAVEKVTENETTEKPTNSVLHFRQNS
FT                 RNNPHNDGRSTNNYHRGRGNGNRPANYGRNGRYQSNDSSNYRRNNNGNGYH
FT                 RQNNQNYGRNQRGRFHNQAPRVFYAQSGNQPAPQPGQVGSQGAYQGQPITQ
FT                 QQQTQPQGQIIHHITRQ"
FT   CDS           2323..5919
FT                 /product="Gypsy-608_AA-I_1p"
FT                 /translation="MKNGKCLQINTTCSNFIYLKLNFSETESTLLVDSGAE
FT                 VSIFKVNSLKQSCLINSSEKCQITGINSLSTETIGTASTDISFPNGISLQH
FT                 KFQLVDQNFPIPTDGILGRDFFTKYHCSINYDTWFLTVITNGETQEIPIED
FT                 NLNGDFILPPRCEIYKHVYTEEINDNYVLLSKELKPGVYCANAIVSSQSHV
FT                 VKLINTNDETIRIDGNFERTYIPLKHYHILSYDKSHVKERNQKLFDELKLK
FT                 NTPENFKQKLLNLCGRFNDIFALEGDTLSSNNFYKQNINLSDNVPVYIKNY
FT                 RSPETHRQEIDTQVDKLLNDNIIQASVSPYNSPILLVPKKSTTDTKKWRLV
FT                 VDFRQLNKKIVADKFPLPRIDDILDQLGRAKYFSTLDLMSGFHQVELDDNS
FT                 RRYTAFSTTSGHFEFNRLPFGLNISPNSFQRMMTIALSGLPPESAFLYIDD
FT                 IIVVGCSVDHHLANLEQVFERLRKFNLKLNPSKCNFFCADVTYLGHHISEQ
FT                 GIQPDKSKYSSILNYPEPKTADEVKRFVAFCNYYRRFIPYFADIAAPLNAL
FT                 SRKNAKFVWDEHCKQAFISLKNKLLSPQILKFPDFNKTFILSTDASELACG
FT                 AVLSQNHGDIDLPVAYASRSLTKGESNKSTIEQELTAIHWAILYFRPYLYG
FT                 RKFVVRTDHRPLVYLFSMTNPSSKLTRMRVDLEEFVFDVEYVKGKENVGPD
FT                 ALSRISIDSEQLKNLQILRVQTRSMTRTPQQSPRIQTANKTDHLMAYDSIN
FT                 NIDAFNMLKLKFSSENNHLYATIYSKNVKGVIAQAQFPYALKKLNLTRYLK
FT                 TINDMAKDVEIDKLAIARNDEIFKMLTPESFKVMCNETLTNVQLILYTPAQ
FT                 ILKEEHEIMKIIEENHVTPLGGHVGINKLLQKLRRSYYWTNMKSDITKYVK
FT                 SCLFCKQNKHTIKTKEHFTHTSTPERTFQTISMDTIGPFTRSNKGNRYALT
FT                 IQCELSKYVIVTPLVDKQANTLAKAFVENLILKYGCPSVIKTDMGTEYRNE
FT                 LFHNICNLLQIKQNFSTAYHPETIGSLERNHRCLNEYLRQFINEQHDDWDS
FT                 WLPYYTFYYNTTPHTEHKFSPFELVYGRQFQFASNLTENIDPVYNTDSYFT
FT                 EMKYRIQTACTKAKILLDKSKTSRNVTQAQKSNPLETKIGDTVWLKIENRR
FT                 KLDPVYSGPFKIINIDHPNVTIEHFISKEQQEVHKNRIIK"
XX
SQ   Sequence 6037 BP; 2225 A; 1262 C; 1055 G; 1494 T; 1 other;
     acaacgaacc tccaacgtat ttacatggcg acgcgtgcag gtgctaagtc ttcaaagact        60
     tagaacagtt tacaagagca agtacaagtg cgaacgttca aatacagcaa atattttgaa       120
     caatcaaata gtgaaatcaa gtgaaaatta aaaggactat gggcaagcac cagtccaaag       180
     agaataatga aaacggcgac attcaattaa cggtgataca agaccagcag caacaacaca       240
     gcgccgacca cgaggaacag accctgttgc tgtggctaat cctggtcaca gtgcttatcc       300
     atttagcaat aaagctgtat aaaatgtaca aaaagcgtga aaaaagtatt gcagtgaaag       360
     cagcccgctc ggtagcagcg attgtttaaa gcctggagaa accactcggc aaagtcacct       420
     tgaagccgca catcattatc atctttaaaa ctaatcacaa atgcccggag cgcaccagct       480
     cggcgaggcc aaccggtagc tgaaggacaa cagcatctac aaaaatacaa atcacaaatg       540
     cccggagcgc accagctcgg cgaggccaac cagtagctgc aggacaacaa catctccaaa       600
     aaatacaaat cacaaatgcc cggagcacac cagctcggcg aagccaccct gtagccgaaa       660
     ttcatctgca tttttaaaaa atcatatcac aaaagcccgg ggcaacagct cggcgaggcc       720
     accctgtagc cgatattcat cagcatcttt aaaaatcata tcacaaaagc ccggggcaac       780
     agctcggcga ggccaccctg tagccgatat tcatcagcat ctttaaaatc atatcacaaa       840
     aacctggggc aacagctcgg cgaggccaac ccagctgcgt atcaaaccga tgcagggcac       900
     gacgacgacg cagctgagta acgagaacga caccggtaaa gagtgagtac tgcaagtcag       960
     agcgaaatta accgataatt gggtcgattt ttttttttgt atcgtgtagt gatccgtgaa      1020
     actagaatta gaaaaacatt tgtagctctc cgcaataatg tgtttgtatc attcataaaa      1080
     cacaatacaa gaaatgcatg aaaaatatga tagactaaaa accatttata atgaattgaa      1140
     agccaaagta agcgtcaggt cttctaaaag aatcctttta aaacagaaaa atctcgccga      1200
     ttccctaatt aataaattaa cgggcgctgc tcaaattgag aactcaaagg aaaatagtat      1260
     tttgttagaa aaagcgaaga aagtgcattt ggmaattctt tcgctagtag agataaaatc      1320
     aaaatcacaa gttacttcct tcaagggtgc agcaacagca ctaatatttg caataaaagt      1380
     aaaaaataaa gcaaagatgt cagcgataga attaattagg acgatcccgt tgctaattcc      1440
     aacataccaa ggtgatggtg aaaagttgac gagcacagta gccgctctga aagcgtgcaa      1500
     gtcacttata gataatacaa accaagcgat tgcccttcag gtaatccttt ctcgcttgga      1560
     aggaaaggct agggccgcag tgggagatgc tccccaaaat atagacgaaa ttatagcaaa      1620
     acttgaagag aagtgcaaaa taaaaatagc accggaaaca gtcgttgcta aattgaacgc      1680
     aacaaaacag gtcggagaaa ttggcaaatt tacggaaaca atagaaaaat tgactttaga      1740
     cctggaacgc gcttacataa gcgaaaacgt tccagttgac gcagctacaa gaatgtctgt      1800
     aaaagcaggc gtaaaagctc ttgcagctgg agttaaaaat tcagaaacca gacttcttct      1860
     aaaagctggt caattctcca cccttactgc cgcggtggaa aaagtaaccg agaacgaaac      1920
     gacggaaaaa cctacaaata gtgtcttaca tttccgacag aattcccgga ataacccgca      1980
     taacgatggt cgctctacga ataactacca cagaggccgt ggaaacggaa accgtcccgc      2040
     taattacgga cgaaatggta gatatcaatc gaacgactca tcgaactatc gacgaaataa      2100
     taatggtaat ggttaccata ggcaaaacaa ccaaaactac ggccgtaatc aacgtggcag      2160
     attccataat caagctccgc gtgttttcta tgcccaatcg ggaaaccaac cagctcctca      2220
     accgggccaa gttgggagcc aaggagcata ccaaggccaa cccattaccc agcaacagca      2280
     gactcaacca cagggccaga ttatacatca cataactcgt caatgaaaaa tggaaaatgc      2340
     ttgcaaatta atacaacttg cagcaatttt atttatctaa agttaaattt ttcagaaaca      2400
     gaatcaactc tgttagtaga ttccggtgcc gaagtttcta tttttaaagt taattcgcta      2460
     aaacaatcct gtttgataaa ttcttcagaa aaatgtcaga taaccggcat aaatagcctc      2520
     tctacagaaa ctatcggaac cgcttcaaca gatatttcgt ttccgaatgg tatatcacta      2580
     caacataaat ttcaattggt cgatcaaaac tttcctatac cgacagacgg aattctcggc      2640
     agagatttct ttacaaaata tcattgttcc ataaattacg acacctggtt tctaacagtc      2700
     attaccaacg gagaaacgca agaaattcca attgaagata acttgaacgg agattttatc      2760
     ctaccaccaa gatgcgaaat ttataaacac gtttacactg aagaaatcaa tgacaactat      2820
     gttctactat cgaaggaact caaacctgga gtttattgtg ctaacgcaat agtaagctcc      2880
     caaagtcatg ttgtgaaatt aatcaacacg aatgatgaaa ccatacgcat tgatggaaat      2940
     ttcgaaagaa cttatatacc gcttaaacat taccacattc tcagttatga caaatcccat      3000
     gttaaagaac gaaaccagaa actttttgac gagctgaaac tgaaaaatac accagaaaat      3060
     tttaaacaaa aacttctaaa tctttgcgga agatttaatg acatatttgc tcttgaagga      3120
     gatacactgt cgagtaataa tttttataaa caaaacataa atttgtctga taacgtaccg      3180
     gtatatatta aaaattatcg gtcaccagaa actcatcgac aagaaattga tacacaagtc      3240
     gataaacttt taaatgataa tataatacaa gcttcagtat cgccatacaa ctcccccata      3300
     cttcttgtac caaaaaagtc cacaacagac accaagaaat ggcgtttggt cgtagatttt      3360
     cggcaactaa ataaaaagat agtagccgat aaattccctt tacctagaat agacgacatt      3420
     ctcgatcaac taggtagagc caaatacttc agcactttag acttgatgtc cggttttcat      3480
     caggttgaac tcgatgataa ttctagacgg tatacagcct tctccacgac ttctggtcat      3540
     tttgaattca accgtctacc attcggtttg aacatttcac caaacagttt tcagagaatg      3600
     atgaccattg ctctgagcgg attgcctcct gagagtgcat tcctttacat agacgacatc      3660
     atagtagtcg gatgctcagt tgaccatcat ttagctaacc ttgaacaagt tttcgaaaga      3720
     ttgcggaaat ttaatctgaa attgaaccct tccaaatgta attttttctg cgctgatgtt      3780
     acctatttag gacatcacat ttctgaacaa ggtatccaac ccgataaaag taaatactct      3840
     tctattctga actatcccga gccaaaaacc gcagacgaag taaaaagatt tgtcgcgttc      3900
     tgtaattact acaggcgttt cattccttac ttcgcggata tagccgctcc attgaatgct      3960
     ttatcgcgta aaaatgcaaa atttgtctgg gacgaacact gtaaacaagc tttcatttca      4020
     ctcaaaaata aacttttatc ccctcaaata ttgaagttcc ccgattttaa caaaacattt      4080
     attctcagca cagacgcatc cgaactagca tgcggtgctg tattgtcaca aaatcatggt      4140
     gatattgacc taccagtggc atacgccagc cgatcattaa cgaaaggcga gagcaacaag      4200
     tccaccatag aacaagaact aacagcaatc cactgggcta ttttatattt tagaccatat      4260
     ctttatggta gaaaattcgt ggtcagaact gaccaccgcc cgctagtata cttgttctcc      4320
     atgacaaatc cctcatcgaa acttactcga atgagagtag atttagagga gttcgttttc      4380
     gacgttgaat acgtgaaagg aaaggaaaac gttgggcccg acgcactatc tcgtatcagc      4440
     atagattcgg aacaactcaa aaatcttcaa atactaagag ttcaaacaag atccatgact      4500
     cgaacacctc aacaaagtcc aagaattcag actgctaata agactgatca ccttatggca      4560
     tatgattcta taaataatat tgatgcattt aatatgctca aactgaaatt ttcaagtgaa      4620
     aataaccacc tatatgcgac aatttattca aaaaatgtga aaggggttat tgcgcaagct      4680
     caatttccct atgcattgaa aaaacttaat ctaacaaggt accttaaaac aatcaacgac      4740
     atggccaaag acgttgaaat cgataagcta gcaattgctc gaaatgacga aattttcaag      4800
     atgttgacac ctgaaagttt taaagtcatg tgtaacgaaa cactgactaa cgttcagtta      4860
     attctttaca ccccagcaca aatattaaaa gaggagcatg aaatcatgaa aatcatcgaa      4920
     gaaaaccacg tgacaccctt aggaggacat gtaggtataa acaaacttct tcaaaaattg      4980
     agacgtagtt attactggac taatatgaaa tccgatataa caaaatacgt taaatcctgt      5040
     cttttctgta agcagaacaa gcacacgatt aaaacaaaag aacactttac acatacatcg      5100
     acaccagaaa gaacattcca aacaatctca atggacacaa taggaccatt tacgagatcc      5160
     aacaaaggta atcgctatgc attgactatc caatgcgaat tatctaaata tgtcatagtt      5220
     acccctttag tcgataagca ggcgaacacg ctagctaaag cgttcgtcga aaatttaatt      5280
     ctaaaatatg gatgcccgtc tgttatcaaa acagacatgg gtactgaata taggaatgag      5340
     ttatttcata atatctgcaa cttgcttcaa attaaacaaa atttctccac tgcataccat      5400
     ccagaaacaa taggaagttt agaacgtaac caccgatgtc ttaacgaata cttgagacaa      5460
     tttattaacg agcaacatga tgattgggat tcatggttgc cctattatac attttactac      5520
     aatactacac cacacaccga acacaaattt tcaccattcg aattagtata tgggagacag      5580
     ttccagtttg caagtaattt aaccgaaaat atagacccag tatataacac agattcatat      5640
     tttactgaga tgaaataccg aattcaaaca gcatgtacaa aagcaaaaat cttattggat      5700
     aaatctaaaa cttcaagaaa tgtaacccaa gcacaaaaat caaacccatt agaaacaaaa      5760
     attggagaca cagtttggtt gaaaatagaa aatagaagga aacttgatcc cgtgtattca      5820
     ggaccattta aaataataaa catagatcac ccgaatgtaa caatcgaaca ttttatatca      5880
     aaagaacaac aagaagtgca taaaaatagg attattaagt agaagtaaaa gtgaaaaaaa      5940
     aaaataaata tatatatata tcatcgaaat tgtataatct atttcattat taacgaatag      6000
     ttaactacat taaccattct tttcataagg gggtagg                               6037
//
ID   Gypsy-608_AA-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-608_AA_;
KW   Ty3_gypsy_Ele137; Gypsy-608_AA-I; Gypsy-608_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-399
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 399 BP; 124 A; 109 C; 59 G; 107 T; 0 other;
     tgtgctgtgc ctgcatcatt tcacattata ttattgccta cgaagaacca ttcgcgtttc        60
     ccacactcca cttgataaca tttcgaaacc cacttgagtt gacaaacctt tcgaacccaa       120
     atcattccac acctcgccaa catgtggcgt gggaagttaa aaccaaaaca taaagtaaca       180
     aactgtaata gaacacccgg caatgcatcg ccacgcattg caaggcattg cacttaactg       240
     acctacatct ggttctcgct aacgatcgtc actcacccgt agctcactgg cacagcgcaa       300
     ctctatccat ctctctttga tatattctgt ctctatcgat atgcataatc aatacatgta       360
     acttagctcg taagatttga caaaataaag aaacattca                              399
//
ID   Gypsy-609_AA-I repbase;    DNA;    INV; 7094 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-609_AA_;
KW   Gypsy-609_AA-LTR; Ty3_gypsy_Ele180; Gypsy-609_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7094
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5083-5565] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           443..2665
FT                 /product="Gypsy-609_AA-I_2p"
FT                 /translation="MDWYRIYADDLDEEELDYELAIRACPLVGGQETRRRE
FT                 LRNLLRDPDSSKALVVSDRMMQANLEIVPYKLQEIERIMIEEPNRSMLSRL
FT                 VHYHQRIRRCVPRNPVEFDNRRLLLETVADLARRYFHLDFRAMETPGPQDD
FT                 ILVGGTANSPRVTIQATSGPRPGEDGQVNPVRSNTSEASNVEGAVGGDFGP
FT                 VTANRQWAANNPGQESDAFHLWRTTASQQQSTGAIPRAARPSVPEFVQSPP
FT                 QLVSSLNFNFQNPQQGGIPTFSRAPEVLDNQQNFTRPPQTVQSRPVGTQYA
FT                 QRSDEVRQSPRITAENVNMNEYVHCSQIEAYVKRCVEQMTQQGTRYSMGQD
FT                 NLVNNLADEVAQVRFADYEPVHTQRNRANQPQQSILREPSPPLQLSGPRPD
FT                 ARSTPRQNLANTYRVFPAEGNRFDPIQFGNIPNHRSTIDSPGLRRYQADVD
FT                 SYRGNSYSRRQPHQQCAIIEKWPKFTGDTNSVPVTDFLKQIDILCRSYDIN
FT                 KQELRMHAHLLFKDKAYVWYTTYEEKFNSWESLEVYLKMRYDNPNRDRLIR
FT                 EEMRNRKQRPNELFSAFLADMEMLAQRMIRKMSEAEKFEMIVENMKLSYKR
FT                 RLALEPIQSIDHLAQMCYKFDALESNLYQVYSQSKSVHHVALEDEGNEDYL
FT                 DTTEADVCALRSKMLQNRNNIPGKINSETKSSNDQKIAEMTCWNCNATGHL
FT                 WRDCDKRKRIFCHICGMMDTTAFRCPNHHNLRSEDEESKNE"
XX
SQ   Sequence 7094 BP; 2096 A; 1427 C; 1564 G; 1978 T; 29 other;
     ttttggcgcc caacgtgggg cctgagagtt gattaggatt tgccaatttt gatatttcgt        60
     atttgggtcg aatcagttag tttgtaaatt ggattgaaga cccttagtta ggataaattt       120
     ttcgaattgg ttgattgaat aatcagtctg attggaattt aggaacaaat ttgatttagt       180
     ttattagttt tggttggttt gtttagagat aattcttgaa ttcggatttt gtatataata       240
     ttgattagaa tttataggtt agttgtatat actttgaatt agattagtct tacttcattt       300
     ttttttgaac tatattactt ttgaattgaa ttacttattt ttctgctgtc atttttgcgg       360
     ttgtcaaaat attggtgaag ggttgattgg aagtgcctta ttaaattgaa tttgatctga       420
     taagtgataa ttgtgttttg aaatggattg gtaccgaatt tatgccgacg acctcgatga       480
     ggaagagctg gattacgagc tggctattcg agcgtgtcct ctcgtaggcg gccaggagac       540
     tcgtcgaagg gaactgagga accttcttcg tgatccagat tcgtcgaaag ccttggtggt       600
     ttctgaccgc atgatgcagg cgaacctcga gattgttccg tacaagctgc aagaaattga       660
     aaggattatg attgaagaac ctaacaggag tatgctttcg agattggttc attaccatca       720
     gagaatccgt cgttgcgtgc cacgtaatcc ggttgaattc gacaatcgta ggctcttgtt       780
     ggagacggtt gctgatttag cccggaggta ctttcatttg gatttccgcg cgatggaaac       840
     tccaggaccg caggatgata ttctggttgg agggacagca aactcgccac gcgttacaat       900
     acaagcgacc agtggccctc gtccaggtga agacggacag gtgaatccgg ttcggtcgaa       960
     cacctccgaa gcgtcgaatg tagaaggagc agttggcggt gatttcggac cagttacagc      1020
     taatcgtcag tgggctgcga ataatcccgg acaagaaagt gatgcattcc atctttggcg      1080
     tacgactgcg tcccagcagc aatctacagg ggcaattcct cgtgcggcaa ggccatccgt      1140
     tccggagttc gtgcagtcac caccgcagtt agtttcatct ctcaacttca acttccagaa      1200
     tccgcaacag ggtggtattc cgactttcag tcgagctcca gaggtactgg acaatcagca      1260
     gaatttcaca cgtccaccgc agacagttca atcgcgtccg gtcggcactc agtatgctca      1320
     gaggagcgac gaagtacgtc agtcgccaag aataacagct gaaaatgtaa atatgaatga      1380
     atacgtgcat tgttcacaaa ttgaggctta tgtgaagaga tgtgttgaac agatgacgca      1440
     acaaggtacc agatactcga tgggacagga caatttggtc aacaatttgg ctgatgaagt      1500
     cgcgcaagtg cgtttcgcag attatgaacc agtacacacc cagcgaaaca gggcaaacca      1560
     accacagcag tccattttgc gtgaacctag tccgcctctt caactcagtg gtcctcgtcc      1620
     agatgctaga agcacaccga gacaaaatct cgcgaataca taccgagtat tcccagcaga      1680
     aggaaatcgc tttgatccaa tacagtttgg aaatatccct aatcacagat cgactataga      1740
     ttcaccgggt ttacggagat accaagctga cgttgatagt tatcgtggta attcgtattc      1800
     tcgacgacaa cctcatcaac agtgtgcgat aatcgagaag tggcctaaat ttaccggcga      1860
     tacgaattct gtaccggtga ccgacttctt gaagcaaata gatattctct gtaggtcgta      1920
     tgacattaac aaacaggaac ttcgtatgca tgcccatctc ttgtttaagg acaaggccta      1980
     cgtttggtac actacgtatg aagagaaatt caactcgtgg gaatcactgg aagtttacct      2040
     caaaatgaga tacgacaatc caaatcggga cagactgata cgcgaagaaa tgcgtaatcg      2100
     taagcagcgg ccgaacgagc ttttcagtgc tttcctggcc gatatggaga tgttggctca      2160
     gcgtatgatt cgaaaaatgt cagaagctga gaaattcgag atgatcgttg aaaatatgaa      2220
     actctcgtac aagcggcgtt tagcattgga gccaattcag tccatagacc atttggctca      2280
     gatgtgctac aagtttgacg cgcttgaaag caatttgtat caggtctaca gtcaatccaa      2340
     gtctgtacac catgtcgcct tagaagacga aggaaatgag gattatttgg atacgacaga      2400
     agccgatgta tgtgcgctgc gatcaaagat gctgcagaac cgaaacaaca ttcctgggaa      2460
     aatcaattcg gagacgaagt cttcaaatga tcagaagatt gcagaaatga cttgttggaa      2520
     ctgtaatgct acaggtcatc tgtggcgaga ctgtgacaaa aggaaaagaa ttttctgtca      2580
     tatttgcgga atgatggaca ccacggcgtt taggtgtcca aaccatcata atcttcggtc      2640
     cgaggacgaa gagtcaaaaa acgagtagtt gaggacgatt cagggaatca ttgtcctcct      2700
     acgagtgatt taaggattcc caacaccaac ttttcgtatt ttcgacgagt ctttcagata      2760
     aacacttccg tttctagatg tccacattta aaagttcgaa tcctttccga agaacttgaa      2820
     ggtttggcag ataccggagc cagtatttca ataattagcg cactagactt gatagaaaag      2880
     ctaggactgg aaattcatcc gattccactg caagttaaaa ctgctgatgg aaccggttat      2940
     cactgccaag gatacgccaa cgtacctttt tcaataggga atgtaactca tgtacttccc      3000
     acgatcattg ttccagagat taccaaaaag ctaatattgg gtacggactt tcttgataag      3060
     tttggctttc gcttgacagc ttctggaaat gattcaactc tctgccgtct cccagatgaa      3120
     aacgagccaa aagttaatca aattgatttg tgcttcgtgg aagaatactt tggagatacc      3180
     gctgagacaa tatgctttga actacaaccg tgtgaactga gcgagaagcc cagtattgag      3240
     ttagacgaaa gtttagaaat gcccacagtg gagattcctg aatctcatat tacaaaagca      3300
     aatgatttac aaactgaaca caatttgagc gatccagaac gtcaactctt gttcgaagcg      3360
     gttcagactc ttccagcaac caaagaaggt caattgggaa gaacctctct gttaaaacac      3420
     aaaattgagt tagtccccgg agccaaacca aagaaatttc catcctatcg ttggtctcca      3480
     gcagttgaag gcgtaattga tgctgaagtt gacagaatga aaaagttagg cgtcattgaa      3540
     gaatgtcctc aagccgtaga tttcctgaac cctctgttgc ctattaaaaa ggccaatgga      3600
     aaatggcgta tttgccttga ttcgcgaagg ttgaaccaat tcaccaaaag agatgagttc      3660
     ccttttccga atatgatggc catactacag agaattccga aatccaaata tttcactgta      3720
     atcgatctta gtgagtccta ttatcaggtt tcactagacg aatcwtcaaa gaacatgaca      3780
     gcatttcgga ctgcgaagaa tctataccgg tttaacgtaa tgccgtttgg cttatccaat      3840
     gctccggcga ccatggctcg ccttatgacg cgagtattgg gccacgattt ggaaccaaaa      3900
     gtttatgtct acctcgatga cataatcatc gtttctaata gttttgagga acaccttgaa      3960
     ctgattagag aagtagctcg gagacttcgt aatgcgggtc tcacgataaa tttacaaaaa      4020
     agtaaatttt gtcagacgaa gatccgatwt ttggggtacg tgctttcaga agatggctta      4080
     tccatggaca taagtaagat tcagccwgtt ctggaatatc ccgtgccaaa gacgatwaag      4140
     gacatmaggc gactcctcgg attggctgga ttttatcaaa aattcatacc caattactca      4200
     gaagtcacca stcccatctc cgatctcttg aaaaagaatc gaaaaaagtt cacctggact      4260
     gaagaggctg atgcagcttt gmgaaawctg aaaactcttc tcgtaacagc accagttctc      4320
     tcgaacccgg atttcacgaa aacgtttgtt atcgagaccg atagttcgga tcttgcgata      4380
     ggagcggtac tcactcagaa cgttgatggt gagaggcggc cggtcgctta cttttctaag      4440
     aagctttcaa gtacwcagcg tcggtatagt gcgacggaaa gagagtgcct cgctgtcctc      4500
     ttaagcatag aaaacttcaa gcatttcgtt gaaggttcgc agtttgtcgt acagacggat      4560
     gcgatgagcc tcactttcct acgcaacatg tccattgaga gcaaatcgcc cagaattgca      4620
     cgctgggcat tgaaactgtc gaaatacgat ctgttattgc agtatcgcaa agggagcgaa      4680
     aatattccgg cagatgctct gtcaagagcg gttaataccg tagaaataac cttagctgat      4740
     ccttatataa cccagctgaa gcaaatgatc gagaagtttc ccgaaaagta tcgagacttc      4800
     actatcaaag acggaaaact gtacaaattt gtcactaata cttcatttat agaagacaac      4860
     mgtttcagat ggaaatacgt ggtkccgttc aatgaaagac ccgaaatwat acstagggtt      4920
     catgaagaag cccaccttgg tccagtgaaa acgttagcaa aaattcggtt ctattggcca      4980
     cgwatggcat ctgaagtaaa aaggttctgt ttccgatgtg aagtctgtcg tgaatcgaaa      5040
     gtccctaact tgaacgtgac tcctcgatgc ggaaaaccaa aactgtgttc gcgtccgtgg      5100
     gagctaatct cattagactt tctcggacca tatccacgca gcaggagagg aaacgtttgg      5160
     atattggtcg tcagcgactt cttttcaaaa tttgtaatgg tacaatgtat gcgaacagca      5220
     actgcgcaat cagtgtgtgc cttcgtcgaa aacatggttt tcaacctatt tggggcacct      5280
     gccatatgta tcaccgataa tgcacaggtg tttaaaggcg aactgttcac aaaactattg      5340
     caaaaatatt cggttactca ctggaatctt tccgtgtacc awccagcacc aaatccgacc      5400
     gaacgtgtta atcgggtgat cgtcaccgcg attcgttgtt cgcttaacag caaaaaggat      5460
     caccgsgact gggatgaatc cgtgcaccag atcgcgaaag cgattaggac gaacgtacac      5520
     gacagtacgg gatacacgcc gtacttcgtc aactttggtc gcaatatggt gagcagcgga      5580
     gatgaatatg agctcctaag acgcatccag gacaaccgaa acwctgagga cctaaaacga      5640
     gaaacaagca atttatttaa tattgtacga gaaaawctca tgaaagccta taagaggtac      5700
     agtacgccgt ataatttacg agctaatgcc aagcatcact tctcagttgg agatgttgtg      5760
     tataaaaagg aaatgcacct ttccaataag cagaaaaact tcgtaggcaa atttggaaac      5820
     aagtttagca aggttcgagt gcgagaagta ctcggaacca acacttatgt ggtagaggat      5880
     ctaactggaa acaagatccc tggcagctac cacggatctt ttctgaaacg agcataagaa      5940
     aaaccagcta tgacggtgca tccgccgatg cacaaaaaca agccacaatg aacaaaaata      6000
     atcagagagg tgtaaggcaa taatccaacg tcgagatgtc ctatagtgtt tcctccgttg      6060
     ttgataagtt aggtaccatt agataaaatc attcaattag atagaatatc ctttagtttt      6120
     cgtcttgagt cacttttgtc gcaaattgkt tggatgagga atcatcaggt tgaccacttt      6180
     ccttttcaca cccaaacttt ctccgaatat aaacaacctc taatagcact atttcacttg      6240
     atacatacct cattcaatag tccagtcgct tgcctccttc aatcgatcca tagatttccc      6300
     tttgttttta ccaaatttca cmgmtttctc cataaatttc atgattttgt tcgattcact      6360
     atccaaattt gttttgatta cgtttcactt tccctttcgt ttgacaatag cccggccaat      6420
     catcaccccc acccgattta ttttgacaga tccgtttaac agcattctca taacgtcaaa      6480
     taactcacag catagattaa catatcattt ggtccaaakt atgtacgtgg caaactagtg      6540
     tacagtttag ggtttttttc agattggaat ctgagtgaaa gcagagttag tttaatgaat      6600
     gctcagatgt ttctgaggta attcggttgw atgtttaact ttgatgatta ggattctcag      6660
     acgtttctka ggtagattta gtaagacata tagtaaggat atggttctca gatctttctg      6720
     aggtaaattg gatktagtag ataaagtttg ttctcagata tttctgaggt gttacattgg      6780
     agttagtcta gatagtttgg tagatatgat atgaatagga taaaagccac tacatatggw      6840
     tcagagattc cgaaatagtt ttcatctaat ttgatacagt ttcattctga ttcttcattc      6900
     aatcaacgtt tgttatgtcg tgttagtgwt cttggtgaat attagamtag ttttgtttag      6960
     tataaaaatt tcgaaatctt caatttcaaa atttttattt ggttaggatg ggcgagaatg      7020
     taagatcatt gtgaacccat catgaagcgt ttgtttttat ccgtgtctgt tttgaatktt      7080
     gctgtcagtc aata                                                        7094
//
ID   Gypsy-609_AA-LTR repbase;    DNA;    INV; 1638 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-609_AA_;
KW   Ty3_gypsy_Ele180; Gypsy-609_AA-I; Gypsy-609_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1638
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1638 BP; 475 A; 297 C; 359 G; 507 T; 0 other;
     tgctgtcagc tatcgagctt ttgtatgctg tcagttatta tgctgccagc tactgtattt        60
     tgtgttttgc tgtcagatct tataagcgaa ccgaagacaa gaaccaaacc tgcgccacct       120
     aggttttgat aatgaaaaca aaacgaaata tatcaatttc aaatttattg cgcagtagag       180
     aaattaattg cgtcgtagag aatcaaccca ggtagaaaac tctaaaacaa tgactataat       240
     gatgctttag ttaaatgctc tctctataat cgaccaatgg gtggaaattg cgtcgcagaa       300
     attaggttga aaccaatcta gggcgcgtcg gtcaaatcat tattgtggag tgcttcgaat       360
     cgagtagttg atttttgtcg gagtgatatt actattgaaa agttaataag taatcattat       420
     tataccaaat ttgaagtgag ttttcgggcg tttaaaatta atttaagtgt tgttaattaa       480
     atttatgtgc ttttttgtgt ttagcgtttg aatttgtcga gcgtaaatag ttatttagag       540
     aaatcctcta atttattaaa gtggaatatt gagttcaggt aagcctttct atttaattag       600
     tgagcaaatt agtgaattta atccgcgttg tgcaggagag acaagcccaa gcaacgtggg       660
     cggcaagtat agggccgttt tgggccagcc tagagtccgg attcacgttc tttcggactt       720
     cgagcatcgt ggacgcaaac cgattcctac agtatcgtcg tttggcctac ccaacggaaa       780
     ttggttgtcg tcgttgttgt gaaacacctt ctacgaaatt cgaaagtggg atcgccagtc       840
     aataagtcgc gtggcgtagc cgagacacct agaacggctt cactccacct cgctagggga       900
     catctatacc ccgacacaca cgccagcgcg cgaaccactt aggttgttcc gacacaccac       960
     ttggtgacga cgaaggtagg ttttgagcca caatacacct cttcgctgac gggttacgtc      1020
     gtcgagggac gtccgacgcg ggaaaatcgt tgcgcaagga aacgataagg ttagaccggt      1080
     ccatatttgc tcttgaagac taaaattata aaaccaatta gcataattag aaaacaccaa      1140
     gcctaaagaa attacgtgac gtcacgaata ggaaatagta ggttttcctg aatttaataa      1200
     gaagtagttt tcttagagtt ttatcaataa actcgataaa ttcgaccgct tttgttatcg      1260
     cgatcgttaa ttacttttct aaaaataaac ctacttcaaa tttagttaaa gccttcacaa      1320
     tttcgagtca cgtaataaat atttattgat tttagattgg tttatacttt tttagtgatt      1380
     cttttccctt tttggtgtct atcgagagat agttagtttt ttttagtaaa tttagtagga      1440
     atttcatatt ggtaagtacg aattgggttg attggctacc gacgtttgcg agtgttgaag      1500
     tgagacttcg gttcttttcg aacattgacc tgccctgagt caggaggtct catccgggta      1560
     atgagcagag ctaacggtcc ttctttatag aaggtggcgc taaagccgtc agctttagga      1620
     acagaacgga acgttaca                                                    1638
//
ID   Gypsy-60_AA-I repbase;    DNA;    INV; 4734 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_AA_;
KW   Gypsy-60_AA-LTR; Gypsy-60_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4734
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions 1278383 1283116.
XX
CC   Positions [3739-4221] - Integrase core
CC   'CAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..4653
FT                 /product="Gypsy-60_AA-I_1p"
FT                 /translation="MSGSEHDSDNFEDPIGRLSVEGRVLPPFVTDRKSKLK
FT                 HCVEMEEMKAQVAALQKELAELRHRSLTVSDGPSGSNTTLTERVPDFREIR
FT                 EYVTPFDPKLPSCPSAEVWVKSIDETGDVYTWSAAMRLHCARLSLSGCAKL
FT                 WFAGCHAVIKNWDEFKAEIVKGFPSAKNPIYYHNLLSSRKWKSGETVEEYV
FT                 YEMLAMGRKGGFTEETIVTYITSGLRSYVRRSGMTIGKVFTVQGLLEELRW
FT                 IDSVDAVATTSRASDAGAGMATNVGDGRGEGRRKTETVGEPCYHCREMGHI
FT                 ARNCPKVKCHLCKREGHMKRDCRGQSGKKEIREQNPKMMRVVDQKSMFVKN
FT                 VVISGLTLKALVDTGGKVSTIQEKFAKKVGELRPSHKVLRQFGKKEVTVSS
FT                 KVCAELKVDGINMPVELQVVPTWVQDTAIILGEDVIDQDRLIMVKRKGDVK
FT                 FAWERESEAGSPQPNSDEEAVESSVARMYTIAVESERVIDEQSLNSDGGHL
FT                 YDQKLVRLIEQYRDCFALNMKEMGCAKSTEMKINLVNEDPVYMKPRRLEYA
FT                 RANVLCEIVSELLDAGIIAETESPYNSQVVLVPKKNNQFRMAVDYRLLNAK
FT                 TIKDKYPMPDIESCLQKLAGARLFITIDLYSGYYQIPLDPESQNYTAFSTM
FT                 DGHYRFLRMPFGLANGCAVFQRAMNRVVEVLKKKKIVVVAYIDDLIIPGKN
FT                 EEELLWKFEELLVVLRDEGFTINLNKSHFFKTLVCFLGFEVSERGVRPGEL
FT                 KTKAVSEFPTPTSVHSVQQFLGLSGFFRRFVQNYSIIAGPLFRLLKKDAEF
FT                 VWQEKEESAFRKIKQLLVERPLLVLYDPKAEIELHTDASSVGLAGILLQKC
FT                 EDVWKPVSYFSRKTSSAEAVYHSYELELLAVVASVERFRQYLIGRFFILRT
FT                 DCSAIRDTYTKKEMNPRIARYFLKMLEYDFQIEHRSGNKMQHVDALSRSPI
FT                 EEPVEIETVAENIMVLEISNTDFLVSMQRQDERVLEIVNKLSRDPLSDEDK
FT                 QIHDNYVLDNHRLYRKVDGRKCWVVPNNVRWRMMRSYHDEKGHFGEEKVVS
FT                 MMGEMFWFPKMRKYVRAYIAACPKCAFFKAKQGRPEGFLNPIPKTPIPFYT
FT                 VHIDHLGPFPRSSKGNEHILAIICGFSKFLLAKPVKSTNTQPVITMLEEMS
FT                 SVFGLPSRIITDRGTAFTSRVFKQFCEDYSVEHVLVAVGTPRGNGQIERSN
FT                 RTILTALRTMVDDADRRWDEKVKFVQSAINTAPNSTTRLAPTTLVLSFKPR
FT                 DVVQNEIISVISTENPIIPASIQELRDRVETATRENQAKQKIYYDKRRRAA
FT                 VNYHVDELVLVVKDQYIAGGSRKLEPRFKGPFVVTEVLPNDRYRVSTIPGF
FT                 SGRALSTVYAADHMKRWCDTVDLEGDALVGSELSTDEEDY"
XX
SQ   Sequence 4734 BP; 1336 A; 886 C; 1368 G; 1144 T; 0 other;
     ttctgtagac aggattgggc ctcgagtcgc gtgccggttg aaaatcacga agagttgtgc        60
     agatttcaac ggtagtgagc cacagtgagt gtggagggta gttttcaacg tgacgggcaa       120
     gtaacgtggt taagaaagcg gtgcgtctgg gtcagaaatc gtgcgaaatt tctgaaaagc       180
     ggttatccca gtggaggtgg cttgagcaag cacttatcgt gaattcagta ctgtagacta       240
     ccaggaccat gtggtgagca cgtggttgag gatttgtaag gctatctgag gccaagactt       300
     ggacaatagc cagtaagtgg acatattgtt cactgcgaag agtgttcgtc cactcagcga       360
     aagtgttcgt aaaagattcg tcgtcgggaa gagtgactac ttagctgagc ccatacgaat       420
     ggcgtagtga gtgctttgta tggtatgagt ggatctgaac atgatagtga caatttcgaa       480
     gaccccatcg gtcgcctaag tgtagaaggc agagtgctcc caccgtttgt taccgatcga       540
     aagtcaaagc taaaacactg tgttgagatg gaagaaatga aagctcaagt ggcggctttg       600
     cagaaggagt tggcagaatt acggcacaga tcattgacag tcagtgatgg tccgtcgggc       660
     agtaacacca cactgacgga aagagtaccc gatttcaggg aaataaggga atatgtaaca       720
     ccctttgatc ccaaactgcc atcctgtccc agcgctgagg tgtgggtgaa aagtattgat       780
     gaaaccggag atgtgtacac gtggtctgct gccatgcgcc tccattgtgc ccgtttaagt       840
     ttgagtgggt gtgcgaaatt atggtttgcg gggtgccatg cagtgattaa gaactgggat       900
     gagtttaagg cggaaatagt taagggtttc ccttcggcga aaaatccaat ctattaccat       960
     aatttgctct catctcgaaa atggaagagc ggtgaaactg tagaagagta cgtgtacgag      1020
     atgctagcca tgggacgaaa gggtggtttt actgaagaga cgattgtaac ttacataacc      1080
     agtggactaa gatcgtatgt gagacgctcc gggatgacga tcgggaaagt gtttacagtg      1140
     caaggtctgt tagaagaatt gcgctggatc gacagtgtgg acgcagtagc aactactagt      1200
     agagcaagtg atgctggcgc gggtatggcc acgaatgttg gtgacggacg cggtgaagga      1260
     cgaagaaaga ctgaaaccgt tggcgaacct tgctaccact gccgtgaaat gggacatatt      1320
     gcccgaaatt gtccaaaggt gaagtgccat ctgtgtaaac gcgaagggca catgaagaga      1380
     gactgtagag gacagagtgg taaaaaggaa attcgagagc aaaatcccaa aatgatgcga      1440
     gtggtggacc agaagagcat gtttgtgaaa aatgtggtga tatctgggct caccctgaag      1500
     gccttggtgg acactggcgg aaaagtttca acgatccagg aaaagtttgc caaaaaggtt      1560
     ggcgagctta ggcccagcca taaagtgctg cgtcaattcg ggaaaaaaga agtgaccgtt      1620
     tcctcaaagg tatgtgcaga gctaaaggtg gatggtatca acatgcctgt tgagctacaa      1680
     gtggtgccta cgtgggtgca agatacggca atcatattgg gagaagatgt gatcgaccaa      1740
     gatcggttga ttatggtgaa aagaaaaggt gatgtgaaat tcgcatggga aagagagtca      1800
     gaggcaggat ctcctcaacc aaactccgat gaagaggccg tagaatcgtc tgtggctcgg      1860
     atgtatacca ttgcggttga atctgagaga gtgatagatg aacagtcgtt gaacagtgat      1920
     ggcggacacc tatacgatca gaagctggtc cgactgatag agcagtaccg agattgcttt      1980
     gctcttaaca tgaaggagat gggatgtgcc aaatcgacgg agatgaagat caatctggtg      2040
     aatgaagatc ccgtgtatat gaagccgaga agattggaat atgcgagagc gaatgtgctg      2100
     tgcgagatcg tgagtgaact gctggatgct gggattatcg cggagactga gtccccgtat      2160
     aacagccagg tggtgttagt gccgaagaaa aacaaccaat ttcggatggc cgttgattat      2220
     cggctgttga acgcgaagac catcaaggat aaatatccca tgcctgacat cgaatcatgc      2280
     ttacagaagc tggctggagc acggttgttt atcaccatcg atttgtacag tgggtattac      2340
     cagatcccgc tggacccgga aagccagaat tacactgcgt tttctacgat ggatgggcat      2400
     tatcggttct taaggatgcc attcggccta gccaacggct gtgcggtttt ccaaagagcc      2460
     atgaacagag ttgtggaagt gcttaagaag aagaaaattg tggtggtcgc ttacatcgac      2520
     gacttgatca ttcccgggaa aaatgaagaa gaattgctgt ggaaatttga agagctgtta      2580
     gtggtcttac gagacgaagg attcacaatt aatttgaaca agagccactt tttcaaaaca      2640
     ttggtgtgct tcttgggctt tgaagtgagt gagagaggag ttcgtcctgg tgaattgaag      2700
     actaaggcgg tctcggagtt tccaaccccc acctcagtac attctgtgca acagtttctg      2760
     gggctgtctg gattttttcg acggtttgtg caaaattaca gcataattgc tgggcccttg      2820
     tttcgattgc tgaaaaagga tgctgaattt gtgtggcagg agaaagagga gagtgcattt      2880
     cgtaaaatca agcaactttt ggtggagcga cctttgttgg tgctatatga tcctaaggct      2940
     gagatcgagc tccacaccga tgcgtccagt gtggggttgg caggaatact gctgcaaaag      3000
     tgtgaagatg tgtggaagcc cgtgagttac ttcagtcgta aaacgtctag tgctgaagcc      3060
     gtataccata gttacgagct ggagttatta gctgtagtgg cgagcgtgga gagattcagg      3120
     cagtatttga tcgggagatt cttcatactg cgtacggatt gttcggcgat acgtgatacc      3180
     tacaccaaga aggaaatgaa ccctagaatt gctcgctatt ttttgaagat gttggagtac      3240
     gatttccaaa ttgagcaccg cagtggaaat aaaatgcagc acgtagatgc tctcagtcga      3300
     tcaccgatcg aggaaccagt cgagatcgaa acggttgcgg aaaacatcat ggtgctggag      3360
     atctcgaata cagactttct agtgagtatg cagaggcaag atgagcgggt attggagatt      3420
     gttaataaac tctcccgaga tccgctgagt gacgaagata agcagattca cgataactat      3480
     gtgttagaca atcatcgctt gtaccgcaag gtggacggaa gaaagtgctg ggtggtaccg      3540
     aataacgtac ggtggagaat gatgaggagc tatcatgacg aaaaggggca ttttggagaa      3600
     gaaaaggtgg tttcgatgat gggtgaaatg ttttggttcc caaaaatgcg gaaatatgtg      3660
     cgagcctaca tcgctgcttg ccccaaatgt gcatttttca aggcgaagca ggggagaccc      3720
     gaaggttttc tgaatcccat tccgaagaca ccgataccgt tctatacggt acacatcgac      3780
     catctgggac catttcctag gtcgtctaag ggaaatgaac atatccttgc tatcatttgt      3840
     ggattctcga aattcttgtt agccaagccg gtgaagtcca ctaacacgca gccggtgata      3900
     acgatgttgg aagagatgtc cagtgtgttc gggcttccat cccgaataat aacggatcgt      3960
     ggaactgcat tcacgtccag agtatttaaa cagttttgtg aagattacag tgttgagcac      4020
     gtgttggtag ccgttggtac acctcgtggg aacgggcaga tcgagagaag caatcgcact      4080
     atactcactg ctctccgtac gatggtcgat gacgcggata gacgatggga cgagaaggtc      4140
     aagttcgtgc agagtgctat caatacggca cccaattcta ccacaaggtt agcgccaact      4200
     acgcttgtgt tgtctttcaa accgagggac gtggtgcaga acgagataat ctcagtaatt      4260
     tcgactgaga accccatcat accagcgtcg attcaggagc tacgtgatcg tgtggaaaca      4320
     gctacgcgcg agaatcaagc caagcagaag atatattacg ataaacggag acgagcagcg      4380
     gtcaactacc acgtggacga attggtgttg gtagtgaagg accaatacat tgccggaggt      4440
     agccgtaagt tggaaccacg tttcaaaggg ccgtttgtgg tcactgaggt gctaccgaac      4500
     gaccgttaca gagtgagtac gatcccagga tttagtggtc gagctctctc gacagtgtat      4560
     gcggcagacc acatgaagag atggtgtgat acagtggact tagagggaga tgctttagtc      4620
     gggagtgaac tatcgaccga tgaggaagac tattagatta gagagatatg agatgtagag      4680
     ttgagtaatt gaaatgaatt cgatgcggac atcttgaatg tctgggtgtc cgat            4734
//
ID   Gypsy-60_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_AA_;
KW   Gypsy-60_AA-I; Gypsy-60_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-216
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions 1278167 1278382.
XX
SQ   Sequence 216 BP; 64 A; 58 C; 31 G; 63 T; 0 other;
     tgtaatgaac tttatactaa atgggcagaa cccagtgaac tgtagaacac taatacctac        60
     acaactacac taatttgata tactttgaac tttacaattt tacaatatac agtcagtcta       120
     ttccaagcca ccggagtaat cacttcgagt ccgaaacgct ccaattcccc ccgagtcctt       180
     gtccgccgtt gacccccctg tagtttgctt tttaca                                 216
//
ID   Gypsy-60_AnFu-I repbase;    DNA;    INV; 4008 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4008
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2944-2944 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..3949
FT                 /product="Gypsy-60_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSQLIGTVEPFVLGESFNEYLSRINVLFEVNEIEAKK
FT                 QTGLLLTLGGASLYKVASKVCDPEEPKLKPYEKLCELLKAHLSPVISVVAE
FT                 RFKFRNCLQKSEQVNEYVIMLKSAAQKCKFGAFLSEALRDQFVAGIKDNEL
FT                 RKQLLREEDISFEKATAIARTWEAAKEENEAMKVKSQVGEMAAVRRAVLGN
FT                 GVRKQQQHPHYNQRQHPQQRFGDRVRKSEAHYDRQQQRFGDRVRKDEACYR
FT                 CGRLHDPHTCPAKEWTCFACKKTGHVSTCCKTVRFNDRSNRVNHVSNEMNS
FT                 NEAESVELEVNGTKLLFEIDCGACVTVIPEYIYKKYFKKVQLVSTTASFFS
FT                 ANGKKIIPLGKIAVTVSVKSSTIQEELEIIVIPTDQRVNPLLGRNGLDLIF
FT                 PGWRSTFALSQIRNSVEIIDELKNEFPKILSENRNTTIEGFEANLVLKENA
FT                 LPIFHKAYTVPFALIKKVEENLEELVRQGILVHTRSSEWASPIVVVKKSDG
FT                 SVRICLDGKATINKYLSIEHYPLPNIEDILASIANWKVFCKIDLTGAYLQV
FT                 KLSEASQNICTINTHKGLYKFTRMPFGVHSAPAIFQAIMDQILMNTKGFAY
FT                 MDDIIVGGKNEEDCKQNLYDILARLEKHNVKINTKKSQFFKTQIDYLGYTI
FT                 TASGICSNKSKVDAIVKAPIPGNVAQLQAYLGMLNYYSRFLPNLSTELRPL
FT                 YTLLRKETKFIWSNECQDAFEKTKSLLVKNNVLEPYDPAKPIILAVDASPY
FT                 GVGAVLSHLVNNVEKPVCFASSTLTEAQRNYAQVQREALAVIFGVQKFHKY
FT                 LFGVKFKLITDNSGIKEIFNPSRGTSSISVSRLHRWALILANYEYDIIHRP
FT                 GKLMNHADAXSRLPLKDATEIDEADGNINAIVENKIIDSATIRKYQKLDRT
FT                 LKDVYECVKNGWTRRNEAMYKEYFKINSNLAIEDEILYFDDRVVIPSALKH
FT                 NILELCHSNHEGIVRMKMKARRSVWWKHMDKDITSYVQGCEVCQVTKPIPR
FT                 EVVKTKWPECSRPFQRIHLDLFHFDNQNLLIIVDSFSKFIDVRILKGLKTF
FT                 DIVENVESFFAYFGYAEEVVTDNGPPFNSENFKAFLESHGTKVRKSPPYHP
FT                 QSNGLAERGVRTVKEVLRKYLIDQRFKALPLQRKVHKFLINYRNTPSTTTN
FT                 ATPSEKIFCYVPHTLIGKVNPIKEEIGEKITTKKKNNNTDWYKNTVTQIEF
FT                 LENEQVLYRNHFKEIVRWIPAKILKKISPVTFLINLNGVVRLAHLNQLKKF
FT                 VKTQMVHWEEKAIEPRRKRMRSESRSPPPRRSDRLKGQPRLKYPR"
XX
SQ   Sequence 4008 BP; 1484 A; 638 C; 872 G; 1013 T; 1 other;
     taaatttggc gacgaggaaa aagcgagtaa aatgtcccaa ttgataggaa cagtagagcc        60
     cttcgttttg ggtgaatcgt ttaacgaata tttgagtaga atcaatgtgt tgttcgaagt       120
     caacgagata gaagcaaaaa agcaaaccgg attgcttctt acgctaggcg gagcgtcatt       180
     atacaaagtc gccagcaaag tgtgtgatcc ggaggaacct aagttgaaac cgtatgaaaa       240
     gttatgcgaa ctgttgaagg cgcatttaag tccggttata agcgtggtag cggaacggtt       300
     taagttcaga aattgtctcc agaaaagcga acaagtgaac gagtacgtta tcatgctaaa       360
     gtcagcggct cagaagtgca agtttggtgc atttttaagt gaagcgctac gtgaccaatt       420
     cgtagcgggc atcaaagaca acgagttaag gaagcagtta ttgagagaag aagatatatc       480
     cttcgaaaaa gcaacagcaa tcgcacgcac ctgggaagcc gcaaaagaag aaaatgaagc       540
     catgaaagta aaatctcaag tcggagaaat ggcagccgta cgtcgagcag tattgggcaa       600
     tggtgttaga aagcagcagc agcacccaca ctataatcaa cgtcagcatc cgcagcaaag       660
     atttggagat cgtgtgcgta agagtgaagc acactatgat cgtcagcagc agagattcgg       720
     tgatcgtgtg cgtaaagacg aagcttgtta tcggtgtggt agattacacg atccgcacac       780
     atgtccggct aaggagtgga cctgttttgc atgtaaaaag acaggacatg tgtctacgtg       840
     ctgtaagacc gtcaggttca acgacaggtc aaatcgggtc aaccatgtgt cgaatgaaat       900
     gaacagcaac gaagctgaga gcgtcgaatt ggaggttaac ggaaccaaat tgttgttcga       960
     aatagattgc ggtgcatgcg ttacagtcat tccggaatat atttataaga agtatttcaa      1020
     aaaagtgcaa ttagtgagca cgacagcgtc ttttttttcg gcaaacggaa aaaaaattat      1080
     tcctcttggg aaaatagcag taacagtcag cgtgaagtca agcacaatac aagaggaatt      1140
     agaaataata gtgataccca cggatcaacg agtgaatccc ttgttaggaa gaaatggatt      1200
     ggatttaata ttccctggat ggagaagtac attcgcatta agtcaaataa gaaattcggt      1260
     cgaaataatt gatgaattaa aaaatgaatt cccgaaaatt ttaagcgaaa atcgcaatac      1320
     tacaattgaa ggatttgaag caaatttagt attaaaagaa aatgcgttac caatatttca      1380
     taaggcttat acggtcccat tcgcgcttat aaaaaaggta gaagaaaatt tggaagaatt      1440
     agtgagacaa ggaatattag tgcatacgcg gtcatcggaa tgggctagtc caatagtcgt      1500
     agttaaaaaa agcgatgggt cggtacgaat atgcttggat ggtaaagcga ccattaacaa      1560
     gtacttatca atagaacact atcccttacc aaacatagaa gatatattgg ctagtattgc      1620
     gaattggaaa gttttctgta aaattgattt aacgggagcg tacctgcagg tgaaattgtc      1680
     agaagcgtcg caaaatatct gtacaatcaa tacacataaa gggctatata aatttacaag      1740
     aatgccgttc ggagtgcatt ccgccccagc tatatttcaa gcaataatgg atcagatatt      1800
     aatgaacaca aaaggatttg cgtatatgga cgatataatc gttggaggaa aaaatgaaga      1860
     agattgcaaa caaaatctgt atgacatttt ggctaggctc gagaaacaca atgtaaaaat      1920
     taatacgaag aagtcacaat tttttaaaac ccaaattgat tacttaggat atacaataac      1980
     agcaagcggt atttgttcaa ataagtctaa agtggatgct atcgtcaaag caccaattcc      2040
     tggaaacgtt gcgcaattac aagcatattt aggaatgcta aactattata gtcgtttctt      2100
     accaaatctg tctacagaat taaggccgtt atatacattg ttaagaaagg aaaccaagtt      2160
     tatatggtca aacgaatgtc aagatgcgtt tgaaaaaacc aaatcattat tagttaaaaa      2220
     taacgtttta gagccatacg atccggcaaa acctattata ctagcagtcg atgcgagtcc      2280
     gtacggtgta ggagctgtgc tgtcgcactt agtaaataat gtagaaaaac cagtgtgttt      2340
     tgcatcttct acactaacag aagcacaaag gaactatgct caagtacaga gagaagcatt      2400
     agctgtaata tttggagtgc aaaagtttca taagtatctg tttggagtta agtttaagct      2460
     tattacggat aacagcggca taaaggaaat tttcaatcct tcgagaggaa cttcttcaat      2520
     ttccgtatcg agattgcatc gatgggcgct catattagca aattatgaat atgatattat      2580
     acacagacct ggaaagctaa tgaatcatgc agatgcawtg agtagattac cgttaaaaga      2640
     cgccactgaa atcgatgaag cagatggaaa tataaatgcg atcgtagaaa acaaaatcat      2700
     agacagtgca acgataagaa aatatcaaaa attagataga acattgaagg atgtatacga      2760
     gtgcgttaaa aatggttgga caagaagaaa cgaagcaatg tataaggagt atttcaaaat      2820
     caacagtaat ttagcaattg aagatgaaat attgtatttt gatgatcgag ttgtcatacc      2880
     tagtgcactt aaacacaaca tattggaact gtgtcattct aatcatgaag gaatagtacg      2940
     aatgaaaatg aaagcaagaa gatcagtctg gtggaaacat atggataaag atataacaag      3000
     ttatgtgcaa ggttgcgaag tatgtcaggt aacaaaacct attccaaggg aagtagtaaa      3060
     aacaaaatgg ccagagtgta gtcgtccatt tcaaaggatc catcttgatt tattccattt      3120
     tgataatcag aatttactca taatagtgga tagtttttca aagtttattg atgttagaat      3180
     tctgaaaggg ttgaaaacat tcgacatagt agaaaatgtg gagtcctttt tcgcctattt      3240
     tggttatgca gaagaagttg taacagacaa cggtccccca tttaactcag aaaattttaa      3300
     agcgttttta gaatcgcatg gcacaaaagt acgaaagtcc ccaccatacc accctcagtc      3360
     taacgggttg gccgagagag gagtaaggac agttaaggaa gttttaagaa agtatctaat      3420
     tgatcaaaga tttaaggctt tgcccttaca gagaaaggtt cataagttct tgataaatta      3480
     taggaacacg ccaagtacaa ctactaatgc aaccccttct gagaaaatat tttgttatgt      3540
     tccacatact ctcataggaa aagttaatcc aattaaagaa gaaataggag agaaaattac      3600
     aacaaagaaa aagaataaca atacagattg gtataagaac acagtaacac agatagaatt      3660
     tcttgaaaat gaacaggtgt tataccgtaa ccatttcaaa gagattgtca ggtggatacc      3720
     agcaaaaata ctgaaaaaaa taagtccagt tacatttttg ataaacctaa atggagtagt      3780
     gcgactcgcg catctcaatc aattgaagaa attcgtaaaa acacaaatgg tacactggga      3840
     agaaaaggcg atagaaccca ggaggaagag aatgagaagt gagtcaagat caccacctcc      3900
     tagaaggtcc gataggttaa aaggacaacc tagattaaaa tacccaagat aagtaattaa      3960
     aagcaaaaat cgtaatataa gtaggtaaac gtcgtttagc ggggagaa                   4008
//
ID   Gypsy-60_AnFu-LTR repbase;    DNA;    INV; 134 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-134
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2872-2872 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 134 BP; 48 A; 13 C; 33 G; 39 T; 1 other;
     tgtagtgtat gtgagattaa gataatatgt atgtataagt gtagtaataa ggatagtttg        60
     taagtagtgc gtaaggtcag gtcagtcgat tattgwacgt caaacaataa agatacgtcg       120
     gtcaaaacgc aaca                                                         134
//
ID   Gypsy-60_CQ-I repbase;    DNA;    INV; 4115 BP.
XX
AC   AAWU01037505;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_CQ_;
KW   Gypsy-60_CQ-LTR; Gypsy-60_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 499-499 (2011).
XX
DR   Genome; AAWU01037505; Positions    6296    2182.
XX
CC   Positions [3134-3595] - Integrase core
CC   'AAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..2568
FT                 /product="Gypsy-60_CQ-I_1p"
FT                 /translation="MNDVVNHSNLSAFDPGDSSTVSARWKKWKRSFQIFLE
FT                 VNNVTIAQRKKSYLLHFVGQQVQDIFFNLQGEEEPAVPNGSDVYKEALKLL
FT                 DNHFLPMKCLPLERHIFRNLEQGADESIEKFVLRLREQGNLCEYDEHLEDE
FT                 IKEQIFEKGSSDDLRAKILTKPRMTLAETVEMGRSLETIAKHRKNNSVKPV
FT                 EVNKVQKASGSSAKGECYRCGRPGHFANDNTCPAIERKCNRCGLKGHFETR
FT                 CKTKTPRKKTRDDNRLRQVKEDPRLADSDDSDDVEYESEVSDDECVKYVFA
FT                 AEPDCGEKVICEVGGVKIEWVVDSGAGVNVINRGTWEHLKKNKVRVKSQTT
FT                 EVKKSLKAYGGHALNVAGVFSTDVATKQKVAEAQIYVVENGTCCLLGRKTA
FT                 TELGILNINTAVWAVQGADERIGKIKGVVARIQVNPEVKPVQQTQCHVPIP
FT                 LRERTEKEIQRLLSQDVIEEAPRDSPWISRLVVRPKVGEPSAVRLCVDMRD
FT                 ANQAIVPQHYPLPTFDSIVPHLHNCKWFSKIDLNKAFHQVELAEDSREITT
FT                 FAAHNGYFRYKRLMFGLSCASEVFQGIIERMLTGLPGVKAFIDDILVFAAT
FT                 KKEHDEILRAVLDRLKSCGVTINSRKCEFGKNEVVFMGHRLSAEGISPTED
FT                 KVETIKRCRDPQTSEELRSFLGLVNYLGKFIPDLATLTTPLRSLLRKQTRF
FT                 TWGKEQKAAFSKIKAVLSHPKNLGFYSPLDKTIVIADASPTGLGAVLLQEK
FT                 DNIKRVICYISKGLSDTEQNYAQNEKEALALVWSVERLEMYLRGLRFYLLT
FT                 VLFIDIRYRVVHM"
FT   CDS           2729..4087
FT                 /product="Gypsy-60_CQ-I_2p"
FT                 /translation="MLLAIVETARSEALTMGDIVNYTLKDEELAAVKKALI
FT                 SGQWTDAIKRYVPFRNELMAVNEIVVRGERLVIPKNLRKKVLEIAHIGHPG
FT                 IERTKQRLRAKVWWPNLDKDAETLVRSCLDCQIVGQPGPAEPLKIRELPQG
FT                 PWSYLSMDMLGPLPSGESLLVVIDLYSRFRVVEVLRQTTTTDILKKLKPLF
FT                 MRLGFPDTLLTDNATNFSSREMMEFCNLYGISLRHSTPYWPQANGETERQN
FT                 RHILKTLRIAAHKGTDWKSDLDEANYVYSLTPHPATGRSPAELAFGRKFKD
FT                 WIPQFGARDVVEDGEIRDRDHSYRTVAKEYYDKRHNVREDTVAEGDVVLMK
FT                 NQTKQNKLSTPFMPGPGTVIKKEGNSVVVETPDGIRYRRNSSHVKKIPAHP
FT                 TTHEEIEDDDAEPTWATPEPLAPAAVTTTQGEAAGRPQRTIRRPLRFDDYD
FT                 LELGQGGH"
XX
SQ   Sequence 4115 BP; 1151 A; 1021 C; 1176 G; 767 T; 0 other;
     ttggcgacga agatcgtact agtccgcgcg aaggcgtagt tcgaaccggc cggtcggaaa        60
     ccggaagaaa atcgacggaa cgtaaacgaa tacgttgaaa ctgatttgaa tcgtgacggc       120
     acgatgaacg acgtggtgaa ccactcgaac ctctccgcgt tcgatccggg agattcgtcg       180
     acggtgtccg cgaggtggaa aaaatggaag cgatcgttcc aaattttcct cgaggttaac       240
     aatgtaacca ttgcacaacg gaagaagtcg tatttgctcc actttgtggg ccagcaggtg       300
     caggatatct ttttcaactt gcaaggggaa gaagaaccgg cagtcccaaa tggatccgac       360
     gtctacaagg aggccctcaa attgttggac aaccactttc tccccatgaa atgccttccc       420
     ctcgaacggc atatctttcg gaacctggag cagggagcag acgaaagcat cgagaagttt       480
     gtactcaggc tgcgggagca gggaaatctc tgcgagtacg acgagcatct ggaggacgag       540
     atcaaagagc agatctttga gaaggggagc tcggacgacc ttcgggctaa aattctcacc       600
     aagcctcgga tgacactcgc cgaaaccgtc gagatgggcc gttccctcga aaccatcgcg       660
     aagcacagga agaacaacag tgtgaaaccg gtggaagtga acaaagtgca aaaagcatcc       720
     ggttcgtccg ccaagggaga gtgttaccgt tgcggtagac caggacattt tgccaacgac       780
     aacacttgcc ctgcgatcga acggaagtgc aaccgctgtg gactgaaggg acacttcgag       840
     acgcggtgca agacaaaaac gccgaggaag aagacccgtg acgacaaccg gttgcggcaa       900
     gtgaaggaag atccgcggct agcggactcg gacgactctg atgatgtgga gtacgaaagt       960
     gaagtgtcgg acgatgagtg cgttaaatac gtgtttgctg ccgaacctga ctgcggagag      1020
     aaagtgattt gtgaagtggg cggagtgaag attgagtggg tggtggactc cggtgccgga      1080
     gttaatgtga ttaaccgggg tacgtgggag catttgaaga aaaacaaagt gcgcgttaag      1140
     tcccagacga ccgaggtgaa gaagtcactg aaagcgtacg gtggccacgc cctcaacgta      1200
     gctggagtat tttcgaccga cgtggcaacc aagcagaagg tagcggaagc gcagatctac      1260
     gttgtagaga acgggacgtg ctgcctgctc ggtcgtaaga cagcgacaga gttgggcatt      1320
     ctgaacatca acacggctgt atgggccgtc caaggagctg acgaaagaat cggcaaaatc      1380
     aaaggtgtcg tcgcgagaat ccaggtcaac cccgaggtga agccagtgca gcagacacag      1440
     tgccacgtac caataccgtt gcgagagagg accgagaagg agatccaaag attgctgagc      1500
     caggatgtaa tcgaggaagc tccacgggac tcgccgtgga tttcaaggtt ggtcgtcaga      1560
     cccaaggtag gagaaccttc agcagtgcga ctatgcgtcg acatgcgaga cgcaaaccag      1620
     gccattgtac cgcagcacta cccgctgccg acattcgaca gcatcgtgcc acacctccac      1680
     aactgtaagt ggttctccaa gatcgatcta aacaaagcct tccaccaagt cgaactagcg      1740
     gaggactccc gagagatcac gacgtttgct gctcacaatg gttatttccg gtacaagagg      1800
     ttgatgtttg ggctgagctg tgcgtccgag gtatttcaag gcattatcga gcggatgttg      1860
     acaggattgc ctggagtcaa agcgttcatc gacgacattc tcgttttcgc ggccacgaaa      1920
     aaggaacacg acgaaatcct tcgagcagtc ctcgacagac tcaagtcctg tggcgtgacg      1980
     atcaacagtc gcaagtgtga gttcgggaaa aacgaggttg tcttcatggg tcacagactg      2040
     tcagcagaag gaatcagccc taccgaggac aaagtggaga ccatcaagcg ctgccgtgac      2100
     ccgcaaacct cggaagaatt gcgcagcttt ctcgggctag tcaactacct gggaaagttt      2160
     attcccgacc tggccaccct aactacaccg ctgcgttcgc ttctgcggaa gcaaacacgg      2220
     ttcacgtggg gcaaggagca gaaggcagcg ttcagcaaga tcaaggccgt cctctcgcac      2280
     ccaaagaacc tgggattcta ctcgccgctc gacaagacaa tcgtcatcgc cgacgccagt      2340
     ccaactggcc tgggggcagt gttgctgcag gagaaggaca acatcaagag ggtcatctgc      2400
     tacataagca agggactctc agacaccgag cagaattacg cgcaaaatga aaaggaagcc      2460
     cttgccttgg tgtggtccgt ggagcggctg gagatgtatc tcagagggct gcggttctac      2520
     ctgttaacag tactgtttat tgacataagg tatagggtgg ttcatatgta actgttacga      2580
     tagagtggtt caaatacaac aggccctacg gttgcaatcc ttccggttca gaatcgtgca      2640
     catcgctgga aaagcaaaca ttgccgaccc tctgtcacgg ctgcccgaat tccaggagtg      2700
     cactacgtac gacgagtacg gagaatccat gctgttggcg atcgtggaaa cggcaaggtc      2760
     ggaagcgctt acgatgggag acatcgtgaa ctatactctg aaggacgaag aattagcagc      2820
     tgttaagaaa gcgttgattt ccggtcagtg gactgatgcg atcaagcgct acgtgccctt      2880
     cagaaacgag ctgatggcag tgaacgagat agtagtcaga ggagagcggt tggtgatccc      2940
     aaagaacctc cgaaagaaag tcttggagat cgcgcatatc ggacaccctg gtatcgaacg      3000
     taccaaacag cgtctgcgag ctaaagtatg gtggccaaac ctggacaaag acgccgaaac      3060
     tctagtacgt tcatgcctag actgccagat cgtcggacaa cctggaccag cggaacctct      3120
     caaaatacgt gaactgccac aaggaccctg gagctacctc agcatggaca tgctgggacc      3180
     cctgccatca ggtgaatcac tcttggttgt gatagatctg tacagccgtt tccgtgtcgt      3240
     ggaggttctc cgacaaacaa caacgacgga tatcctgaag aagctcaaac cgctgttcat      3300
     gaggctcggt ttcccggaca cgctgttgac ggacaacgca acgaacttct caagccgaga      3360
     gatgatggag ttctgcaacc tgtacggcat ctcactgcgg cactcgactc cgtactggcc      3420
     tcaagccaac ggagaaacgg aaaggcaaaa tcggcacatc ttgaaaactc tgcgaattgc      3480
     tgctcacaaa ggaaccgact ggaagagtga tttggacgag gcaaactatg tctactctct      3540
     aacaccacat ccagcaacag gccgctctcc ggctgaactt gctttcggga ggaagttcaa      3600
     agactggatc ccgcagttcg gcgccaggga cgtggtcgag gatggagaaa tacgggacag      3660
     ggatcactcg tatcgaacag tagccaaaga atactacgac aagcggcaca acgtgcgcga      3720
     agacacagta gccgagggag acgtggtgct gatgaagaac cagacgaagc agaacaagtt      3780
     atccacgcca ttcatgccgg gaccggggac agtgatcaag aaggaaggaa acagcgtggt      3840
     cgttgaaaca cctgacggga tccggtacag acgaaattcg tctcacgtta aaaagattcc      3900
     ggctcaccct acaacccacg aagaaatcga ggatgacgac gccgaaccaa cgtgggccac      3960
     accggaaccg ttggcgcctg ctgcggtcac gacaacacaa ggagaagccg cgggcagacc      4020
     acagcgaacc attcggcgac cgctgagatt cgatgattac gatctggagc ttggacaggg      4080
     cggacactaa aaggacaacc tgagaaagga gagaa                                 4115
//
ID   Gypsy-60_CQ-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   AAWU01037505;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_CQ_;
KW   Gypsy-60_CQ-I; Gypsy-60_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-173
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 500-500 (2011).
XX
DR   Genome; AAWU01037505; Positions    2181    2009.
XX
SQ   Sequence 173 BP; 60 A; 28 C; 29 G; 56 T; 0 other;
     tgttgtattc cacaaatatt gtttagcgtg tagggacttt tgcttcacct ataaaatact        60
     atcttgaaca aggaaatcga aatgtcatta ataaagtagc gagtgaagat aaaacacgcg       120
     gttttcgata cgggatttaa ttcgtctttt attacacaaa atccaatcta aca              173
//
ID   Gypsy-60_DEl-I repbase;    DNA;    INV; 4531 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_DEl-I;
KW   Gypsy-60_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4531
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7080-7080 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..4071
FT                 /product="Gypsy-60_DEl-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEIIKNMQTPKAPQSDGKASHITLPKFNPDVAGVEPS
FT                 SWCSTVDLIFADNVLQGSNLVIALSKALEGTASQWLSQICFAGITWEQFRE
FT                 LFLQRFVGIETSAGMVLNVLKGRPKPEEGFAEYGSRIVTMLMSKWKAKDLE
FT                 EIAVSVTLAHMAQVDSKLARWIFTTNVKTRNELQQQLQAHSFMKRSIEDDA
FT                 TGSDRKKFKSPSLVKCNYCGKVGHKYAECRARLQQGQSKGKTYSGTNTTGV
FT                 KDRSGVKCFKCGEIGHFASACPKVRSGGCERIFEKRVDICAVAPPSGTIKA
FT                 SGESVPFCFDSGAECSLVKESVAHKFKGKRVNNVVKLNGISNDAIYSTQQV
FT                 LCKINIEQYCFEILLHVILDKYLKYDVLVGREILSQGFGVMIDADKFQIYK
FT                 TKMINKVTLIDYEDIISSDTDLVDSDKIVLTNILKCYSDWFISGIPKTRVS
FT                 TGLLEIKLIDPQKTVQRRPYRLGEEEKNLVRCKIDELLKANIIRPSCSPFA
FT                 SPMMLVKKKNGTDRLCVDYRMLNDNTIADRYPLPLIADQIARLRGAKYFSC
FT                 LDMASGFYQIPVHENSIERTAFVTPEGQYEFLTMPFGLKNAPSVFQRAITR
FT                 ALGSLAHSCAVVYIDDVLVIAETKEEGLERLRIVLETLSKAGFSFNITKCS
FT                 FLKTRIEYLGFEISNGEISPNARKVKALLDLPPPQSVSQLRQFIGLASYFR
FT                 QFVPKFSETLKPLYQLTSKKNSDFSWQQQHEQIRTKIITVLTQAPVLTIFD
FT                 PKHAIELHTDASSIGYGAILLHKINEKPHVVEYYSKCTSPAESKYHSYELE
FT                 TLAVVNGIKHFRHYLQGRKFVVYTDCNSLKASRTKLDLTPRVHRWWAFLQS
FT                 FDFNIEYRKGDRMAHVDCLSRNPVPDKNNGQNKIPEKRINLTEVTDNWLIS
FT                 EQXRDPEVADTLAKFKNNELPEHLLKTYELRKGVLYRKIQRNGRTKCLPVI
FT                 PRAFRWAVINHVHESIMHLGWEKTLDKVYGFYWFENMSKYVRRFVENCITC
FT                 KLAKPPVGKIQSELHSIPKVDIPWHTVHIDITGKMSGKNDLKEYVIVLVDA
FT                 FTKFVYLHHTLNIDTECSIKAVKAVVCLFGAPTRIIADQGRNFASSGFREF
FT                 CSSQKIELHLIATGASRANGQVERIMSTLKSMLTAVETSQRSWQDALTEVQ
FT                 LAINCTTNRVTKFSPLEMLIGRESRPLCLLPIGEEEDNLIDRESIRKQAKE
FT                 NMEANARYDKHRYDKNKAKIIKYNVGDHVLIKNEERHQTKLDPKFKGPFEI
FT                 IEQLDGDRYVLKSLTSKRTYKYAHEFLRALPNRELSKEIDEELDDSRGDAS
FT                 DSEMRNRDKDGTAVALESQEGI"
XX
SQ   Sequence 4531 BP; 1498 A; 798 C; 1009 G; 1225 T; 1 other;
     tcagaagtgg gatctgcttt gcctactgat ccacatttgt tagcattgga actgcaaaat        60
     cgcaacctga tggaaataat taaaaacatg cagactccaa aggcgccgca atccgatggt       120
     aaagcttcac acattacctt accaaaattt aaccctgacg tggctggagt ggagccctca       180
     tcttggtgca gcacggtgga ccttatattt gctgataacg ttctccaagg tagcaatctg       240
     gtgatagcac taagtaaagc actagaaggc accgcatcac agtggctttc acaaatatgc       300
     tttgccggca tcacttggga gcagttcagg gaactgtttc ttcagcgttt tgttggaatt       360
     gaaacctctg ctggcatggt tctcaatgta ttgaagggtc gaccgaaacc agaagaaggc       420
     tttgctgaat acggcagccg gattgtcacg atgcttatgt ctaaatggaa agccaaggat       480
     ttagaagaaa tagctgtgtc tgtaactttg gctcacatgg ctcaagttga cagcaagttg       540
     gcgcgctgga tttttaccac caatgtaaaa actcgcaatg agctacaaca acagttgcag       600
     gcacactcct tcatgaagcg tagcatagaa gacgatgcaa ctggctcgga tcgcaaaaag       660
     ttcaaatctc cgtccctggt gaaatgcaac tactgcggaa aggttgggca taaatatgcc       720
     gaatgtcggg cacgtttgca gcagggccag agtaaaggca aaacctacag cggcacaaat       780
     acgacgggtg tgaaagatcg atctggtgtc aaatgcttca aatgtggcga aattgggcac       840
     tttgcatccg catgtcctaa agtccgatca ggtggatgcg aaagaatttt tgagaagcga       900
     gtggatatct gcgcagtagc tccaccctct ggaacaataa aggcatccgg tgagtctgtt       960
     ccattttgtt tcgattccgg tgcagaatgc tcactggtca aggaaagtgt cgcccataaa      1020
     tttaaaggga aaagagttaa taatgttgta aaactcaatg gcataagtaa cgatgcaatt      1080
     tatagcactc aacaagtttt atgcaaaata aatattgaac aatactgttt tgagattttg      1140
     ttacacgtaa ttttagacaa gtatttgaaa tacgatgtgt tagttggtcg agagattctt      1200
     agccaaggct ttggcgtgat gatagacgct gataaatttc aaatttataa aacgaaaatg      1260
     ataaataagg tgactttaat tgattacgag gatattataa gttctgatac agatttagtt      1320
     gattccgata aaattgtctt aacaaatatc ctaaaatgct actctgactg gtttattagt      1380
     ggaataccaa aaactcgagt ctcgacaggg ctgttggaaa ttaagttaat agatccacaa      1440
     aagacagtgc aacgacgtcc ctataggctt ggcgaggaag agaaaaacct ggtgcgttgt      1500
     aaaatcgatg agttgttaaa agcaaatatt atccgtccaa gttgctcacc tttcgccagc      1560
     ccaatgatgt tagtgaaaaa gaaaaatggc actgatcgtc tttgtgtgga ctacaggatg      1620
     ttaaatgata ataccattgc tgataggtat ccattgcctc ttatcgcaga ccaaattgcc      1680
     cggcttcgcg gtgcaaaata tttctcgtgc ttagatatgg ctagtggttt ttaccaaatt      1740
     ccagtacacg aaaattcaat tgaacgaacc gcgtttgtga ctccagaggg ccagtacgag      1800
     tttttgacca tgccttttgg cttgaaaaat gcaccttctg tttttcagag ggccataaca      1860
     agagcattgg gatcactggc acactcatgc gctgtcgttt acattgatga cgtgttggtt      1920
     atagccgaaa ctaaagaaga aggattagaa cggttgcgta ttgtattaga aacattgagt      1980
     aaagcgggat tttcatttaa cataaccaag tgctcctttc ttaaaactcg catagaatac      2040
     ctaggttttg agataagtaa cggagaaatt agtccaaacg cacgtaaagt aaaagcattg      2100
     ttagatttac cgcctccaca atctgtgtcg caattacgac aattcatagg attggcttcg      2160
     tattttagac agttcgttcc aaaattctcg gaaacgctta agcctttgta tcaactcaca      2220
     tcaaagaaaa attctgattt ttcttggcaa cagcaacatg agcaaataag gactaaaatt      2280
     ataacagttt tgacgcaggc acctgtgttg actatattcg acccgaaaca tgcaatagaa      2340
     ttgcacaccg atgcaagttc gattggctat ggtgctatat tgttgcataa aattaacgag      2400
     aaaccccatg tggtagaata ttatagtaaa tgcacatccc ctgccgagtc aaaatatcat      2460
     tcgtacgagt tagaaacgct agcagtagtc aatggtatca aacacttccg tcactacttg      2520
     cagggacgta aatttgtcgt atatacggac tgtaattcct taaaggctag tcgcacaaag      2580
     ctagacttaa cgccgagggt acataggtgg tgggcatttt tacaatcgtt tgactttaac      2640
     atagaataca ggaagggtga tcgtatggcg catgtagatt gtttatctcg gaatccagtg      2700
     cccgataaaa ataatggtca aaataaaatt ccagaaaaac gcattaattt aaccgaggta      2760
     actgacaact ggttgatttc tgaacaamaa cgtgaccctg aggtagcaga tacattagct      2820
     aagttcaaaa ataacgaatt gccagagcat ttattaaaaa cctatgaatt aaggaaagga      2880
     gttttatata gaaagataca acgaaatggc aggactaaat gtttgcctgt aatccctagg      2940
     gcatttagat gggcagtgat taatcatgtt catgaatcca tcatgcatct aggttgggag      3000
     aaaacattgg ataaagtcta tggattttac tggtttgaaa atatgtcaaa gtacgttcgt      3060
     agatttgttg aaaattgcat tacttgcaaa ttagctaagc caccagttgg aaaaattcaa      3120
     tctgaattgc attcgattcc taaggtagac atcccgtggc acacagtgca tattgatata      3180
     acaggaaaga tgagtggaaa gaatgactta aaggagtacg taattgtctt agtagatgcg      3240
     ttcacgaaat ttgtttactt acatcacacc ttaaatattg atactgaatg ttcaatcaaa      3300
     gctgttaagg ccgtcgtgtg tttgtttggt gcgcctacac gcattatagc ggatcagggc      3360
     cgtaattttg caagctcagg attccgtgaa ttttgttcct cccaaaagat tgagctacac      3420
     ttaattgcta caggcgcgag tagggcaaac ggccaggtag agcgtataat gagcacgctt      3480
     aagagtatgt tgacagcagt cgaaaccagt cagaggtcgt ggcaagatgc tctaaccgaa      3540
     gtacaattgg caattaattg taccaccaat cgagtcacaa agtttagtcc attagaaatg      3600
     ctaattggta gagaatctag acctctttgt ttgttaccaa taggtgaaga agaggataat      3660
     ttaattgata gagagtctat aagaaaacaa gccaaggaaa atatggaggc taatgctcgt      3720
     tatgataaac atagatatga taagaataaa gcaaagataa taaaatataa tgtgggagac      3780
     catgttttaa taaaaaacga agagcgtcac caaactaagc ttgatccgaa atttaaaggt      3840
     ccgttcgaaa taatcgaaca actagatggc gatagatatg ttttaaagtc tttaacaagc      3900
     aaaagaactt ataagtatgc acatgagttt ttgagggcat tgcccaatag agaattaagt      3960
     aaagaaattg atgaagaact agatgactca agaggagatg catctgactc tgaaatgaga      4020
     aatagagata aagatggcac agcagttgcc ttggaatccc aagaggggat atagagaccg      4080
     caccataaca gatggaattg ttatggcggg ggtcaatcga ccgcaccata acagatggaa      4140
     ttgttatggc gggggtcaat cgaccgcacc ataacagatg gaattgttat ggcgggggtc      4200
     aatcgatcgc accatagtag aaggacttac tgtggcgggg gtcagtgttg atagcaccat      4260
     gacagaagga cttgttatgg ctaaaatcag ttagaataac tacacaacat aatggaatta      4320
     cagaaaagaa gaattgttaa gtttgactta agacaaaatg ttatgaaaac gtctaagtga      4380
     tgtcattgta aaaccaattt gattgtttgg tataaaagtt gaaactttat ataaataaaa      4440
     gttaatgaat taaatggtaa ataaaatttg acgataattg agaaaatcct agatcaaaca      4500
     cacgaggacg tgtgatttgt caggaaggcc g                                     4531
//
ID   Gypsy-60_DEl-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_DEl-I;
KW   Gypsy-60_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-323
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7041-7041 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 323 BP; 96 A; 57 C; 84 G; 86 T; 0 other;
     tgtcgtagaa tgattaattt gcccactgta tatgtgtggc atagaatggt tagtttgacc        60
     attgtgcatg catgtacagt ttgagtggcg acacgatgtc gctaacggtg gttttcagaa       120
     cgcgcaacag ctaaggaaaa gagacatcct ctgctgttga gtaaggtctg ttcgtagggg       180
     cgtagaaaag agatagcatt atgatctgca aaacttgtga aattacttgg aatgtgcgta       240
     gtgagttcag ttacgatcac gccactgaaa cgaacagaac ttgctgcgtc cgaaaaatgg       300
     aaataaatga gccatctccg aca                                               323
//
ID   Gypsy-60_DWil-I repbase;    DNA;    INV; 6204 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_DWil_;
KW   Gypsy-60_DWil-LTR; Gypsy-60_DWil-I.
XX
NM   Gypsy-60_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6204
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1889-1889 (2012).
XX
RN   [3]
RP   1-6204
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           643..1557
FT                 /product="Gypsy-60_DWil-I_1p"
FT                 /translation="MAVELTEAHLNQALSSLRQVANYDGAPENLTSFIRRI
FT                 DFIMHLYPTHDIRQHNILFSAIEMQLTGEAQRLSQIGQXNTWPELRTLLIN
FT                 ELKTQTPCEELLRRLYNTSYAGNLRKFVTELEDKSYIITNKLSLENDANNT
FT                 ALYTNALNNTIKDVINKKLPDRLFMTLARYDITTVSKLKQVAQREGLYENS
FT                 ITEIRKSNQSQNQNQKGGKTFVPNSTTPSQTKQSDTIQNQKLFQEFQQKLN
FT                 IDRAQNPMNNQQQNNYSKNNVANQPTKRQRESNSGISKMDTSENFHQNASD
FT                 QSEEEIETSPSSE"
FT   CDS           1476..4694
FT                 /product="Gypsy-60_DWil-I_2p"
FT                 /translation="QNGHIRKFSSECLGSIGRRDRDKSFIRIMMNNKPLRC
FT                 VVDSGSSINIMSENFFNFKTYLGDSKIHMIEGAVELKEIIFLAPSKLCPTE
FT                 QKFYIHKFSNKYDMLIGRTFLKACKAQINYEEEYAKLGNYTFYFRDVEEIE
FT                 EEQNIEVLDPPTERDPETNFAIENEIIESNEYRLDHLNNEETQKLKKVLYE
FT                 FSDIQYREGENLTFTSTIKHSIHTKHEDPIYKRPYKYPQTFDMEVNKQINE
FT                 MIEQGIIRKSNSPYCSPIWIVPKKGDASKKQKFRLVIDYRNLNEVTIDDKF
FT                 PIPVMDEILDKLGKCQYFTTIDLAKGFHQIQMDPESIAKTAFSTKHGHYEY
FT                 TRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTSLEEHILSL
FT                 RKVFNKLREANLKLQLDKCEFMKKETAFLGHIITTEGIKPNPDKVKAIQXF
FT                 PIPKTPKEIKSFLGLCGFFRKFIPNFAHIAKPLTLGLKKGAKININDPNYI
FT                 SSFEKLKYLLMNDPILAYPDFKKPFFLTTDASNIALGAFLSQDHRPISYGS
FT                 RTLNEHELNYSAIEKELLSIVWATKYFRPYLFGRKFEILSDHKPLVWLNNI
FT                 KEPNMKLQRWKVRLNEFDYKIKYLPGKENHVADALSRVKIDENFLGSTEST
FT                 AATIHSAHEDNENYIPIVERPINYYNRQIEFIRGSEDKAETTTYFYKTNIK
FT                 ITYKEMTNAYARDIIIRYLCSKNTVLYFHNEQDFPIFQQAFIEIIQPNANT
FT                 KTSKSSIKLEDLQTFAQFKEIILKQHKELLHPGIEKTINLFKEKYYFPDFQ
FT                 NLIQNIINECSVCNIAKTENRNTKLTFEITPELFNIREKYVMDFYMIDNLQ
FT                 FLSCIDIYSKFATLVEVKSRDWLEAKRAIMKVFTEMGKPIEIKSDKDSAFL
FT                 CIALKNWLQEENVKLEITSSKNGISDVERFHKTVNEKLRIINSENDIEDKL
FT                 LKFEKILYVYNHKTRHKTTNRTPADIFIYAGSPDYNTQTRKIHQINNLNED
FT                 RHDFEIDTRFKQAPLVKSKTTNPFKKTGEINQLDEKHFEERNRGQKVTHYK
FT                 SKFKKKKKVNKSKYDN"
FT   CDS           4698..6173
FT                 /product="Gypsy-60_DWil-I_3p"
FT                 /translation="LITGQQLKMTFLCIMLFLTLKSTCSQSIDINPVKAPN
FT                 GYLIFKTGTMDLPTNFEYHYLKVNLTLIDITYNNLMQQAQEFKNLIHIQYL
FT                 TEKLSREINGIHIVKRNKRGLINGIGSIYKYLFGTLDQEDKDELEEKINNL
FT                 ESNSVQANELNYVIDTVNKGLEVINSLREEKEKSVRLEVLIFNFEHFTEYI
FT                 EDIEMGMQLTRLGIFNPKLLKHNHLSHVNSEKLLNTKTSTWLKPSSNEIFI
FT                 ISNIPQEVIKTPIFEILPYPDENKNILTENSYDKYYFNNNTLFNKNTKQIE
FT                 TNECIIGILNQIPTTCKYTKTYKNFQTNYIEPNIIVTWNLPKTKLNQNCVN
FT                 NELIIEGNNIIKIYDCALQLNEISIINSLLDYSQSIYVTNNITRLEPISFI
FT                 QTKEIINEHTKYYTAFQTITLTTFILTIISLITYLIYKFKAMPQKLIIKHF
FT                 RSNNNRGPTDIIETPIVEKIESQIINKIDTPIFTAEKNPSLYPNVSA"
XX
SQ   Sequence 6204 BP; 2664 A; 1140 C; 866 G; 1529 T; 5 other;
     ggcgcagtcg gtaggattgg aaaaaaagtt attctatccg tgttacatat agaattgtta        60
     tccgtgtgtt acatagaatt ggtgaataac cattgtagtg aactgttatt ctatccgtgc       120
     gacgcgtaga attgttatcc gtgcgttaca tagaattagt gaataatcac tataaaataa       180
     atttccgatc cgacatcaag aacttacggg tagtgctcaa aagtctacaa cagtgaaaaa       240
     tattttctgc caactgtgcg cggaagtatc aactgtgtgt tgcaaccaaa gaaaaaaaaa       300
     tttacgccaa ctgtgcgcga aaatattaac tgtgtgttac aactattaaa tccaattgag       360
     gaacaaaaac cgccaacttg tgtgcgaaca aaaaaccaaa atccaaaata aaacataacc       420
     aaaacccaga aaattaacaa aacaaaacac cacaaaaaac ccagaagatc aacaaaacaa       480
     cacatcacta aaacccagaa aaaaaaaaac aaaacaacac atcactaaaa cccagaaaaa       540
     aaaaaaaaaa aaccaaaaca aamcatcact aaaacccaga aaawcaaaaa ccaaaataaa       600
     acaccactaa aacccagaaa atcaaaaaaa agaagaaata aaatggctgt agaactcacc       660
     gaagcccacc tcaaccaagc actgtcttcg ttaagacagg tggcaaatta cgatggagct       720
     ccagaaaatc tgacgtcgtt tataaggagg atagatttta ttatgcacct atatccaacc       780
     catgatataa ggcagcataa catattgttc agtgcaatcg agatgcagct caccggagaa       840
     gcacaacgac tctcacaaat tggacaakcc aacacctggc cggaactaag gacactcctc       900
     atcaacgaat taaaaacgca gaccccctgt gaggaacttc tgcgacgcct ctacaacacc       960
     agctatgcag gaaatcttcg taagtttgta acmgaattag aagataagtc ctacattata      1020
     acaaacaaat taagtctaga aaacgatgcg aataacaccg cgctttatac aaacgcgtta      1080
     aataacacca taaaagacgt aataaacaaa aaattacccg atagattatt catgacgtta      1140
     gctagatacg atataaccac agtcagcaaa ttgaagcaag tagctcaaag agaagggtta      1200
     tacgagaata gtataacaga aataagaaaa tcaaatcaaa gccaaaatca gaatcaaaaa      1260
     ggtggaaaaa cttttgtacc caatagtaca actccgtctc aaacaaaaca atcagataca      1320
     atacaaaacc aaaaactatt ccaagaattt caacaaaaat taaatattga cagggctcaa      1380
     aatccaatga ataatcaaca gcaaaacaac tattcaaaga ataatgtagc aaaccagcct      1440
     acaaaaaggc aaagagaaag taatagtgga attagcaaaa tggacacatc cgaaaatttt      1500
     catcagaatg cctcggatca atcggaagaa gagatagaga caagtccttc atcagaataa      1560
     tgatgaacaa taaacctttg agatgtgtag tcgactcagg ctcttcaatc aatataatgt      1620
     ccgaaaactt ttttaatttc aaaacctatt taggagattc caaaattcac atgattgaag      1680
     gagcagtaga actaaaagaa attattttcc ttgcacccag caaactttgt ccgacagaac      1740
     aaaaatttta tatccataaa ttttcaaata aatacgacat gttgataggc agaactttcc      1800
     taaaagcctg caaagcacaa ataaattatg aagaagaata cgcaaaatta ggaaactata      1860
     cattttattt tagagatgtt gaagaaatag aagaagaaca aaacatagaa gttttggacc      1920
     cacccacaga aagggacccg gaaacaaatt ttgcgattga aaacgaaata atagaaagca      1980
     atgagtatag actcgaccat ttaaacaacg aagaaactca aaaactaaaa aaggtcttgt      2040
     acgaattcag tgacattcag taccgcgaag gtgaaaattt gactttcacg agtacaataa      2100
     agcactctat tcatacaaaa catgaggacc caatctataa acgaccatac aaatatcccc      2160
     aaacatttga tatggaagtc aacaaacaaa taaatgaaat gattgaacag ggtatcattc      2220
     gaaaatcgaa ttccccctac tgttcaccca tttggatcgt cccaaaaaaa ggagatgctt      2280
     ccaagaaaca aaaattcaga ttagtcattg actatcgaaa tctaaatgaa gtcacaatag      2340
     acgacaaatt tccaattcca gtcatggacg aaattctcga caaactagga aaatgccaat      2400
     actttaccac cattgattta gctaagggat ttcatcaaat tcaaatggat cctgaatcta      2460
     ttgcaaaaac agctttctca actaaacatg gccattacga atacacacgt atgccatttg      2520
     gtcttaaaaa tgccccggca acattccaaa gatgcatgaa taatcttttg gaagacctta      2580
     tttataagga ttgccttgtt tatctggatg acatcattgt gtactccact tcattggagg      2640
     aacacatact atcactcaga aaggtattta acaaactaag agaagctaat cttaaactcc      2700
     aactcgacaa atgcgaattt atgaaaaagg aaacagcatt ccttggtcat ataataacaa      2760
     cagaaggtat aaaacctaac ccagataaag tcaaagcaat tcaaaawttt ccgataccca      2820
     aaactccaaa agaaattaaa tcattcttag gattatgcgg attcttcagg aaatttatac      2880
     ccaactttgc acatattgca aaacctttaa ctctaggatt aaagaaagga gctaaaataa      2940
     atataaacga cccaaattat atttcatcct tcgaaaaatt aaaatatctc cttatgaatg      3000
     atcctatact tgcatatccc gatttcaaaa aaccattttt cctaaccaca gatgctagca      3060
     acatagcttt aggtgcgttc ctttcacagg accatagacc tatttcttat ggtagtagaa      3120
     cacttaacga acacgaactt aattattcag ccatagaaaa ggaattacta tctattgtat      3180
     gggcaaccaa atattttagg ccataccttt tcggtagaaa gttcgagatt ctaagcgacc      3240
     ataagccttt agtatggctc aacaatataa aagaaccaaa tatgaaactt caaagatgga      3300
     aagtaagact aaatgagttt gattacaaaa ttaaatattt acctggcaaa gaaaatcatg      3360
     tagcagatgc cctttccaga gttaaaatag atgaaaactt tttaggatca acagaaagca      3420
     cagcagctac aatacatagt gctcacgagg ataatgaaaa ctacattcca atagtagaaa      3480
     gacccattaa ttattacaac agacaaatag aattcattag aggttcagaa gacaaagcag      3540
     aaacaacaac ttacttttac aaaacaaaca taaaaataac atacaaagaa atgaccaatg      3600
     cttacgcaag ggatataatc ataagatatc tttgcagtaa gaacactgta ctatattttc      3660
     ataatgaaca agattttccc atattccaac aagcttttat cgaaataata caaccaaacg      3720
     caaatacaaa aacctcgaaa tctagcatta agttagagga ccttcaaacg tttgcacaat      3780
     ttaaagaaat aatcctaaaa caacataaag aattattaca tccaggaatt gaaaaaacga      3840
     ttaatttgtt taaagaaaaa tattattttc ccgattttca aaacctaatt caaaacatta      3900
     ttaatgaatg ctcagtatgc aatatcgcaa agacagaaaa tagaaataca aaactaactt      3960
     ttgaaataac accagaactt tttaatatca gagaaaaata cgtcatggac ttttacatga      4020
     tcgacaattt acaattcctt tcatgcattg acatttactc gaaatttgca acacttgtag      4080
     aagtaaagtc tagagattgg ttagaagcca agagagcaat tatgaaagta ttcactgaaa      4140
     tgggcaaacc aatagaaata aaatcagaca aagattcagc atttctgtgt atagcactaa      4200
     aaaattggct acaagaagaa aatgtaaagt tagaaatcac atcaagtaaa aacggcatct      4260
     cagatgtaga aagattccat aaaacagtaa atgaaaaact cagaattata aatagtgaaa      4320
     atgacatcga agataaatta cttaaatttg aaaaaattct ctacgtatac aaccataaga      4380
     cgagacataa aacaactaac cgaacaccag cggacatttt tatctatgca ggatcccccg      4440
     actataatac ccaaacaaga aaaatacatc aaataaacaa tttaaatgaa gatagacacg      4500
     acttcgaaat cgacactaga tttaaacaag caccattagt aaagtcaaaa acgacaaatc      4560
     cattcaaaaa gacaggagaa ataaatcagt tagacgagaa acattttgaa gaaagaaata      4620
     gaggacaaaa agttacacac tacaaatcaa aattcaagaa gaaaaagaaa gttaataaaa      4680
     gcaaatacga caattaatta attacaggtc aacaactcaa gatgactttt ttatgcatca      4740
     tgctattctt aacattaaaa tcaacatgca gtcaatccat tgacataaac ccagtaaaag      4800
     caccaaacgg ttacttaata tttaaaacag gaaccatgga cttaccgaca aactttgaat      4860
     atcattattt aaaagtgaat ttaactctaa tagacattac atataataat ttaatgcaac      4920
     aagcacaaga atttaaaaac ctaatccata ttcaatactt aacagaaaaa ctaagtaggg      4980
     aaattaatgg aatacacatt gtaaaacgta ataaacgagg actaattaac ggaattggtt      5040
     caatatacaa atatcttttt ggtactcttg atcaggaaga taaagatgaa ttagaagaaa      5100
     aaataaataa tcttgaaagc aatagcgtac aagcaaacga actaaattac gtaatagaca      5160
     ctgttaataa aggtttagaa gtaataaaca gcctcaggga agaaaaagaa aaatcagtaa      5220
     gattagaagt tctaatcttt aattttgagc atttcacaga atacattgaa gacatagaaa      5280
     tgggcatgca gctcactaga ctaggaattt tcaacccaaa acttctaaaa cataatcact      5340
     taagtcatgt taattcggaa aaactattga atacaaaaac ttccacctgg cttaaaccaa      5400
     gttcaaacga gatatttatc atttcaaaca ttcctcaaga agtaataaaa acccctatct      5460
     ttgagatact tccttatcca gacgagaata aaaatatttt gacagaaaat tcatacgata      5520
     aatactattt taataacaac actttgttca ataaaaacac aaaacaaata gaaactaacg      5580
     aatgtataat aggcatttta aatcaaatcc caaccacttg taaatacact aagacatata      5640
     agaattttca aactaattac attgaaccaa acataattgt aacatggaat ctaccaaaaa      5700
     ctaaacttaa tcaaaattgc gtaaacaacg aattaataat agaaggcaat aacataataa      5760
     aaatttacga ttgtgcctta caactaaacg aaatatcaat aataaattca ttgcttgact      5820
     atagccaaag catttatgta acaaacaata tcaccaggct agaacctatt tcctttatcc      5880
     aaacaaaaga gataattaac gaacatacga aatattatac tgcatttcaa actattacat      5940
     taaccacttt tatacttact ataataagtt tgattacata cttaatctat aagtttaagg      6000
     caatgccaca aaaattaata attaagcatt ttcgatcaaa taacaatcgt ggtcccacag      6060
     acataatcga aaccccaatt gttgaaaaaa tcgagtccca aattataaac aaaattgata      6120
     ctccaatatt tacagctgag aaaaacccct cgctatatcc caatgtatcc gcctgaggac      6180
     aggctatttt ctttaggatg gggg                                             6204
//
ID   Gypsy-60_DWil-LTR repbase;    DNA;    INV; 348 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_DWil_;
KW   Gypsy-60_DWil-LTR; Gypsy-60_DWil-I.
XX
NM   Gypsy-60_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-348
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1890-1890 (2012).
XX
RN   [3]
RP   1-348
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 348 BP; 128 A; 77 C; 37 G; 105 T; 1 other;
     agtcatatat ccaacttcaa taccctaaac cttataaact tttcgccccc taaaatcaaa        60
     ctttaaagta aacatccgtt ttttataaac aattggacac ttgcaataac aattgtcccc       120
     ctaaaagtca aaagcgtgag aacgctaatt cagcattaaa ttcgggccaa tcaaatcaca       180
     ccaatatcga tcacgccact aaagggctca caagtttagc ctataaatat tactctaaga       240
     catctttgta ctttagtttt aagtattcat tcattgaata aagascggac tttcaactca       300
     acaaaacaat atcttttttt cctatctgga aagaccagat atataatt                    348
//
ID   Gypsy-60_LMi-I repbase;    DNA;    INV; 5171 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5171
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(300..455,391..636,621..1877,2011..3834)
FT                 /product="Gypsy-60_LMi-I_1p"
FT                 /translation="MHNSGDFGNSSSARKHAAVTQWSRSTDKKISVAAGFS
FT                 FVDFSSLVPSHEYRNVSQQALVLLISVLLSPAMSTETDRVLSDSESLENGS
FT                 GSEDPKQTKADEMKAMMGWMITEFKNTVGGLETKMGNSIAEMGIQLNGNSI
FT                 IGLETKMGNSIISIKSEMGNSIAEMGNSIKNSMGVLKNEIITDFDKRLEDL
FT                 TEKFEVREKDLNARIGAVETELNGRIESGKQMCEIRNEDTRQALIEINKRI
FT                 VAGVDETKTILENTKSVLRKEIEQVVAVNKCSIEKVNSRMGDLELCSASXN
FT                 TGWFGMQIPSCKTFSGESNYHVVDFIAACKDQFLPGMSDNCKIKYIKRMLE
FT                 GPAQTWANQCAEKFVSFEAFEKLILDRYWSQAKQVRLQNEFLNGVAYKGDK
FT                 QTMKEFCQEELRKLVHLDRPLGALTEIYTLCRRLPQNLNXQLIHCPTDSTE
FT                 KFLDFIEKIDHAMACEPRLGEPQHIANQREHNDSRNTRNWGNKQHDHHQER
FT                 NVNENWRNNGGRWNGDNRNQRDSWGRNNRDDRRLTQENGERRREQNRNEQH
FT                 RQRSENREKGEERICNMDAILGNEEMVGGWFTQHDKRNANKRRKHKNPSED
FT                 CNVGDLFSERVSSGRDVEENSIGLASVLGESGLHVEHKCVIECKSMPSGCV
FT                 NGSKSVIELDETKSNVNMCGKNVGIPKFKATTNDSVIRAVSGLVHVDDVWF
FT                 DDVNVNKNVQAPIINEDWEQDEKSKFRGWMKKVNWIRKWAPDDWAIHKYDY
FT                 IKRLGEQCGKNETYYNVLKEIFGGDPEFDELRGQSMFSLETSKMNDEHDSV
FT                 NEGSSDEQEIGDDIQTFVIYNSEQYEGMKEGGMNARWMEKEEHEYTVSDWI
FT                 QFLNYRKTVEPKVWERDKFGFARKIAMLNAGNPEFKEVFEKVFADDDNIEP
FT                 YSPSSEGQVCNMVKHCIHEIEDDLLAETELEKNVNEYVQPIINVTVGGVCE
FT                 NALIDTGSSISGIAEDFYNQIRTTGTVEFPVTGVRIKNATGTYSKPVSKEV
FT                 VLDVNIGGKTFSHVFLVIRNLCLNLVLGNDFLCKNGACIDCKDQVLELHSG
FT                 GCMKRVKFRSARSDKDLVACLHIAKCTMDEAEVEEEIRRKVNNTKGIDDRA
FT                 KGELYYLLTDNKNVFSEKPGKVTKFEYSIRVKPHEPIKAKPLGKAVSEYDQ
FT                 CI"
XX
SQ   Sequence 5171 BP; 1800 A; 666 C; 1306 G; 1395 T; 4 other;
     catatggggg ctcgtccatt tcgtgaaaca gtgagtactg aggcacgttc cgactcgtcc        60
     atttcgtgaa atagtgagtt ccggctcgcc catttgaagt gagaagtacg tcgcggctcg       120
     ttcatttcga gtgcgaagta cgttccgact cgcgtgttga agaaaatttc agcggcccgc       180
     agcagcgagt gtgcggcagg cagcaacagc ggaaccggga gacgcggcgg caacagccgg       240
     tatattcgag accatcacca gacaccggcg tggcggcagg acgcggcgcg gcagaggcga       300
     tgcacaacag cggcgatttc ggcaacagca gctcagcacg gaaacacgcc gcagtcacgc       360
     agtggagtcg cagcacagac aaaaagataa gtgtcgcagc aggctttagt tttgttgatt       420
     tcagttctct tgtccccagc catgagtacc gaaactgata gggttttaag tgatagtgaa       480
     tccttagaga atggtagtgg gtctgaggac ccaaagcaaa ctaaggcaga tgaaatgaaa       540
     gcaatgatgg gttggatgat aactgaattt aaaaatactg tagggggcct ggaaacaaaa       600
     atgggaaatt caattgctga aatgggaatt caattatagg cctggaaaca aaaatgggaa       660
     attcaattat aagtataaaa tctgaaatgg ggaattcaat tgctgaaatg ggaaactcaa       720
     taaaaaattc aatgggtgtt ttaaaaaatg aaataatcac agactttgac aaaagattag       780
     aagacttgac tgaaaaattt gaagttagag aaaaggatct gaatgccaga attggtgctg       840
     ttgagactga gttgaatggc aggatagaat caggaaaaca gatgtgtgaa atcaggaatg       900
     aggacactag gcaggcttta attgaaataa acaaaaggat tgtggctggt gttgatgaaa       960
     ctaagacaat tttggaaaat acaaaaagtg ttttaagaaa ggaaatagaa caggtagtag      1020
     ctgtaaataa atgtagtata gaaaaggtga atagtaggat gggtgattta gaattgtgct      1080
     ctgcatctgs aaatactggt tggtttggga tgcagatacc aagttgtaaa actttttcag      1140
     gggaaagtaa ctaccatgta gtagatttta ttgcagcatg caaagatcaa ttcctgcctg      1200
     gaatgtctga taattgcaaa ataaaataca tcaaaagaat gttagaaggc cctgcacaga      1260
     cgtgggctaa ccaatgtgct gagaaattcg tttcctttga agcttttgaa aaactaattt      1320
     tagataggta ctggagccag gctaaacaag tcaggttaca aaatgaattc ttaaatgggg      1380
     ttgcttacaa gggggataaa cagactatga aggaattctg tcaggaagag ttaaggaaat      1440
     tggtgcactt agatagacca ttaggagctc ttactgaaat atacactctt tgccggaggt      1500
     tgccacagaa tttaaattkg caacttatac actgccctac tgactctact gaaaaatttc      1560
     tagattttat agaaaaaata gatcatgcaa tggcatgtga acctagactt ggggagcctc      1620
     aacatatagc taaccaaagg gaacataatg atagtaggaa taccagaaat tggggaaata      1680
     agcagcatga ccaccaccaa gaaaggaacg taaatgaaaa ttggagaaat aacgggggta      1740
     gatggaatgg tgacaatagg aatcagaggg attcatgggg aagaaataac agggatgatc      1800
     gaaggttaac acaggaaaat ggagaaagaa gaagggaaca aaatagaaac gaacaacaca      1860
     gacaacgttc ggaaaactag aatttgttcc aaatggggtc cgatttggga cgggatacaa      1920
     ggcacgaaat aggaccgaga gaaggataaa taattacaag ctagatagca ggggatcaga      1980
     taggaataac tatgaccaga atagagatag agagagaagg gggaagaaag aatatgtaat      2040
     atggatgcaa tattgggtaa tgaagaaatg gttggtggat ggtttacaca gcatgataag      2100
     agaaatgcaa ataagagaag aaagcataaa aatccaagtg aagattgtaa tgtgggagat      2160
     ttgtttagtg aaagagtaag tagtgggaga gatgttgaag aaaacagcat tggtttggct      2220
     tctgtattag gtgaatcagg tttgcatgtg gagcataagt gtgtgattga gtgtaagagt      2280
     atgccaagtg gatgtgtgaa tggtagcaag agtgtcatcg aactagatga gacaaaatca      2340
     aatgttaaca tgtgtggaaa aaatgtgggt attccaaaat ttaaagcaac tactaatgac      2400
     agtgtaataa gagctgtatc tggtttggtg catgttgatg atgtgtggtt tgatgatgta      2460
     aatgtaaata agaatgtaca agcacctata attaatgaag attgggaaca ggatgaaaag      2520
     agtaaattta gaggctggat gaagaaggtc aattggatta ggaaatgggc accagatgat      2580
     tgggcaattc ataaatatga ctatataaaa agattaggag aacaatgtgg gaaaaatgag      2640
     acatattaca atgttcttaa agaaatattt ggtggggatc cagaatttga tgaattgagg      2700
     ggacaaagca tgttctcatt ggaaactagt aaaatgaatg atgaacatga ctctgtaaat      2760
     gagggatcta gtgatgaaca agaaataggg gatgatatac aaacttttgt catctataat      2820
     agtgaacagt atgagggtat gaaagagggt ggaatgaatg caaggtggat ggagaaagag      2880
     gagcatgaat atacggttag tgattggatc caatttttaa attatagaaa aactgtagaa      2940
     ccaaaggtat gggaaaggga caagtttggt tttgcaagga agatagcaat gctaaatgct      3000
     gggaacccag aattcaaaga ggtgtttgaa aaagtatttg cagatgatga taacatagaa      3060
     ccatatagcc ctagtagtga gggtcaagta tgcaacatgg taaagcactg catacacgag      3120
     atagaagacg acttgttagc tgagactgaa ttagagaaaa atgtgaatga atatgtgcag      3180
     ccaatcataa atgtcactgt tggaggggta tgtgaaaatg cactgattga tactgggagc      3240
     tctattagtg gcattgcaga agacttttac aatcagatta ggaccacagg aacagttgaa      3300
     tttccagtca caggggtgag aataaaaaat gcaactggaa cttacagcaa gccagtgagt      3360
     aaggaggttg tattagatgt aaatatagga gggaaaacgt ttagtcatgt ttttctggta      3420
     ataagaaatc tctgtctaaa tcttgtgtta ggcaatgatt tcctgtgtaa aaatggggct      3480
     tgcattgatt gtaaggatca ggtgctggaa ctacattctg gaggatgcat gaaaagggtt      3540
     aaatttagaa gtgcaaggag tgataaagat ttagtggcat gtctgcacat agccaaatgt      3600
     acaatggatg aggcggaggt cgaggaagag atacgaagga aggtaaacaa tactaaggga      3660
     attgatgacc gtgcaaaggg ggagctgtat tatttactga cagacaataa gaatgtattt      3720
     tctgaaaagc caggtaaggt aacaaaattt gaatattcaa taagggtaaa accacatgag      3780
     cctattaaag caaagccatt gggtaaggca gtctcmgagt atgaccagtg tatatagtag      3840
     ggtaagaatt tgtgtaaatt tatttttgta actttattat atatctgtga ttaatttatg      3900
     tgaagcagta aggacagggt ttaaaatttc agaggtggtg aaaatgtgta tataaaggag      3960
     tacattatgt tataaagtac acgtgtgaac tggagatttt gagttttaca tgttgatact      4020
     agatctgtgg atgtcctttt tctaattagt cccagattag gattaggcag tgcaattagt      4080
     tttaaataat ttggaatagg tgatgatagt gtggcaatgc acaaagttgg tgcattgggg      4140
     gtagagaaat gtttgtatag ggatattgtg tatccaaggg atcatgttgt gtgaaagtag      4200
     ggaatgctat gtgtatcatg tgaaattctt gaaatttgct gaatggatat aagattataa      4260
     aaacaaaaca aaatctatat tttctgatat gaaagataat taaatgaatt aaatagtttg      4320
     tcagaagtgc aggaaaaaaa gttttcttaa gagttcattt tgtgagatgg gtaaatttgg      4380
     ctacaatgtt tcttagacag tcatttagat tacagtctct aaatccacat acaaatgaca      4440
     ataatcatgc cacatcttga gtttattttt cattggagcg gcctgaggga tatataataa      4500
     aagaacaatg acttcggctt ttctgccttt gaatagaaca agttatttta tgacctgagt      4560
     aacttaatgt ctgtgtaact gtatgaagtt ctgtcatgaa attctgtttt gattgtgcta      4620
     aatctggata gcagaggggt ggggtgtgaa tctgacggat ccctggtatt caaaaaatat      4680
     atttgtcaaa agaaaaatca tttggtatcc ttttttctcc ttttcattgt tttcatgcca      4740
     gctgagagga caagagagct caaatcagtg ccaatagcct gagctgcatc ggcttacaaa      4800
     ctgaaaaaga cagaagtgta aggaccagtg cccatatact gaagtgcaac acaagggctg      4860
     ttggaagtga aacttttcag tgcaacggga agtgtatatt aaaaatgatg gatattcatt      4920
     ccataatgag acaatgacat ggggcatacc catcaatatt agtgattttt ttgtatgttc      4980
     ttgttgmtgt gtgtcacata tacatacttt aaatatgtac aatttcacaa aatttaatat      5040
     ttgtcactag ttataagatg tttccttgta tagtattttc ttgttcttgt ttgaggggga      5100
     tatgtgtgtt ggtttttggt gctacttgcg acatcctgca ctatgtttgg aagtcgcaag      5160
     tgggggtatt a                                                           5171
//
ID   Gypsy-60_LMi-LTR repbase;    DNA;    INV; 628 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-628
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 628 BP; 162 A; 132 C; 174 G; 158 T; 2 other;
     tgacatgaca gtgcccccag gctgatgccg cgcacttgta ttctatagag ccacacaccg        60
     gcacatttaa atcgcgcgcg cgtgaacgcg cgcgggaact gtgagcttgg ggaactttgt       120
     gacgtagggg tttttccgcg ggactggaaa aacggaagcc gagtcgcgcg ggggaggaga       180
     gtcgtgtgga ctgccgagga cggcggagcg ctgttgctcg tcgccgcgat tttgtaaaaa       240
     cgtgtgatag tttttcgcgg ccgaagtgcc cgtttttcgc ctttgcagtt gaaggatttc       300
     ggtgtgtggg gaaaagtgcg aagttgcgtg ggggctcgag tcatacaaaa aacattttta       360
     taatattaca tacgtgcagt gtgacgaaga caaattaaac ttatttaaaa cgatagctgt       420
     gtggtgaacg ttattctttt gcaactcgcc ctatatgccc attagtgtgt ataattagka       480
     tgtactttta tttattaatt kgaaactgta ttaaggcgca cgtggacgga acaagcacca       540
     aagcgggaat catacagtgt catcccctaa acgagcacaa aacatttttc catcagaaag       600
     agggaaaagc atgttccgcc ccgtcgca                                          628
//
ID   Gypsy-60_SpEx-I repbase;    DNA;    INV; 4178 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4178
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4071-4071 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..4120
FT                 /product="Gypsy-60_SpEx-I_1p"
FT                 /translation="MPIGKLEPFSLSSKQWPAYIRRVNQYILLNDVKDNLK
FT                 VPMLITVVGESTYALMCDLCSPDFPENKTYEELVKLVADHLEPQRSEIAER
FT                 HVFRLRRQREGEPLAEYLQALKHLATTCNFGKCKQCSTLEENLRDQFVSGL
FT                 ANDAMRSRIFAERXIEYKEAVELALALEAAEKHAEVSGSTVPAATSGAGGE
FT                 AGEDLHYTRGRRGRTRGARNTASAAGAPGAASTGRAASTDGAARPSNGGSA
FT                 ARAGAGACWRCGRAHRXERCRYVNYICDECKQRGHLRVMCRSVKNSGNWVD
FT                 SRQNYLSDDDSGDIFKIIMMGSKDNKPYYINVTIDSYEIKCEIDTGSRISA
FT                 INEETYKRQFSHKMIKPDNLMLRSYSGSRIESLGYIEVQVRLRDIEVKSLP
FT                 LYVIKNGACPLLGRDWLRALKVSQINLHKITDDGFVNRLCAEYPEVFTDKL
FT                 GTCKRAIRLQLIDEEPVYVRARPVPLAMRARVERELARLESDGTIYRVDYS
FT                 DYGTPIVPVVKKNGDIRICGDYKITINPKLKRDYYPLPRIDELFAKLSGGE
FT                 KFTKVDLTHAYEQCILTKESQPFTAITTHLGTYAYRRTPYGLACIPEKFQK
FT                 LMEETLRGIPGCVVFLDDICVTGSNDKEHIGNLRAVLERLREAGLTVKLSK
FT                 CSFLQESVKYLGYIIDKKGLRPDTSKLDAISNAPRPENITQLKSFLGMLNY
FT                 YGKFISNLSTLLHPLHSLLKKDVRWKWTQSCERAFNEAKRVLLGDQVLAHY
FT                 EEGRPLVLSVDSSAYGLGAVLAHRYSDGSERPISCVSRTLNAAERNYSQLD
FT                 KEALAILFGVTKHHQYLFGRSFILRTDHQPLTHIFGAKGGIPQTAASRLQR
FT                 WAARLAAYAFTVEFVRSADNGPADALSRLPQPQEARLVDSVNYVNLIEESF
FT                 PISFKDVARETEKDSVLCKIKGYVTFGWPLTVTDAEKPFAARKQDLSVELG
FT                 CLVYRYRVVIPKSLQKQVLAEIHDGHLGVNKMKNLSRNYVYWPNLDRDIEN
FT                 VCRGCTACGAVRDAPPHAPLHPWEFPLHPWHRVHADFADCGGMRYLIMVDA
FT                 YSKWIEAIAMRKTDAQATILAMRGIFARFGLPSLLVTDNGPPFTSQEFNTF
FT                 CKKNCVKHVTTAPYRPQGNGAAENAVKTVKKAIKRALYEGRNVATALDKFL
FT                 FKYRNCQHATTGVSPAVALQGRRLRGRLDALRPDVSAVVRSAQERQVAAAG
FT                 GTSRSLAPTDTVLARDYSTRGGKWLQGTIVEQTGPVSYKVDVGRGDVWRRH
FT                 MDQIIPIHNKNRHSLSRTSIVSASKDGSPNSEVPSVRTETEDTCEDASDGV
FT                 GEYSHKSNIEAAPEPVTSPPSPPPGASARALRAHNRARLHL"
XX
SQ   Sequence 4178 BP; 1150 A; 885 C; 1122 G; 1014 T; 7 other;
     ttggcgacga ggataaattg mgattaattg cgcgtgtgag ttcgttgatt cttattacaa        60
     gatgccaatc gggaagttag aaccgtttag tttaagttct aaacaatggc ctgcatacat       120
     acgccgagtt aatcagtata ttttactgaa tgacgtcaag gataacctaa aagtgcccat       180
     gctcataacc gtcgtgggag aatccacata tgcactgatg tgtgacctct gttccccgga       240
     tttccctgag aataaaacct acgaagaatt agtgaagttg gtcgcagacc atttggaacc       300
     gcagcgatcg gagatcgctg aacgccacgt kttcagactg cggcgacaac gcgagggcga       360
     acctctggct gagtacctac aagcgctcaa acatctggca acaacttgca attttggcaa       420
     atgcaaacag tgttctactc tggaggaaaa tctgagggac cagtttgtgt cgggcctagc       480
     taatgacgca atgcgttcaa ggatatttgc cgaaagaaas attgaataca aggaggcggt       540
     ggagttagca ctagctctag aggctgcaga gaagcacgcg gaggtgagcg gcagtacggt       600
     gccggcggcg acctcaggtg caggcggcga ggcaggcgaa gatctgcatt acacacgtgg       660
     caggcgaggg cgcactcgcg gcgcccgtaa cacggcmagc gcggcgggcg cacctggcgc       720
     ggcgagcacg ggccgcgcag ccagcacgga cggcgctgcg cgcccttcga acggcggctc       780
     ggcggcgcgg gccggcgccg gcgcktgctg gcggtgcggg agagcgcatc gckcggaaag       840
     gtgccgttat gtgaattata tttgtgacga gtgtaaacaa agaggtcatt tgagagtgat       900
     gtgtaggtca gtgaaaaata gtggaaattg ggtcgacagt cggcaaaact atttgagtga       960
     cgatgattcg ggwgatatat ttaagattat catgatggga agtaaggaca ataaaccata      1020
     ctatattaat gtaaccatag atagctatga aattaagtgt gaaatcgata ccggtagtcg      1080
     tatttcggct attaatgaag aaacgtataa acgtcaattt tctcataaga tgattaagcc      1140
     ggataattta atgttgcgta gttattccgg ttcacgcatc gaatcactcg gttatattga      1200
     agtgcaagta cgattacgag atatagaagt gaaatctttg cctctttatg tcattaaaaa      1260
     cggagcatgc cccttattgg gaagagattg gttgcgtgcc cttaaggtct cacaaattaa      1320
     tctacataaa ataaccgacg atggattcgt gaaccgatta tgcgcggaat atcccgaagt      1380
     gtttactgat aagttaggta catgcaagcg agccattcga ctacagctga tcgatgagga      1440
     accggtttac gttcgtgcga ggcccgtgcc tttagcgatg cgcgcgcgcg ttgagcgtga      1500
     gttggctcgg ctggagtctg acgggaccat atatcgcgtc gattattcag attatggcac      1560
     acctattgta ccggttgtaa aaaaaaatgg ggacatacgg atatgtgggg attataaaat      1620
     tacaattaat cctaaactta agcgtgatta ttatcctttg ccccggattg atgaattatt      1680
     tgcgaaatta agtgggggag agaaatttac aaaagtcgat ctcacccatg cttacgaaca      1740
     gtgtatttta acaaaagagt ctcaaccctt tactgccata actactcacc ttggaacata      1800
     tgcgtaccgt cggacgccgt acggtttagc ttgtattcct gaaaagtttc agaagttgat      1860
     ggaagaaaca ctacggggca ttccgggttg tgtggttttt cttgatgata tttgtgtaac      1920
     gggtagcaat gataaagaac acattggtaa tttacgagct gttctcgaaa ggttgcgcga      1980
     ggctggactt actgtgaaac taagtaaatg tagtttttta caagagagtg tcaaatactt      2040
     aggttacatt attgataaaa agggtttgcg acccgacact agcaaacttg atgccatatc      2100
     caacgcaccc aggcccgaaa atataaccca actaaaaagt ttcttgggta tgttaaatta      2160
     ttatggaaaa tttattagta atttgagtac gctattacac ccattacaca gtttattaaa      2220
     gaaagatgtg cgctggaaat ggacacaaag ttgtgagcga gcatttaatg aagccaagcg      2280
     tgttctcctg ggcgatcaag ttttagcaca ttacgaggag gggcggccac tcgtactgtc      2340
     ggtagacagc agcgcgtacg gacttggcgc tgtgttagca caccgctact cggacggcag      2400
     cgagcgcccg attagctgtg tatctcgtac gcttaacgcg gcggagcgca attatagtca      2460
     gctggataag gaagcgctcg caatattgtt cggtgtgaca aaacaccatc aatacttgtt      2520
     cggtaggagt tttatattac gcacagatca ccagccgctg acgcacatat ttggcgctaa      2580
     gggtggcatc ccacagacgg cggccagtcg gctacagcga tgggcggcgc gcttggccgc      2640
     atacgcgttc actgttgaat tcgttcgctc ggctgacaat ggcccggccg atgctttatc      2700
     gcggttacca caaccccagg aggcccggct ggtggattca gttaattatg ttaatttgat      2760
     agaggaatct tttcctataa gtttcaaaga cgtggctagg gagactgaaa aagattcagt      2820
     gttatgtaaa ataaaaggtt acgttacgtt tggttggccg ttaacagtga cggatgcaga      2880
     gaaaccattt gccgcaagga aacaggattt atctgtagag ctagggtgtc ttgtttatag      2940
     atatagggtt gttattccga aatcactaca gaaacaggtt ttagcggaaa tacacgacgg      3000
     acacctggga gttaacaaaa tgaaaaattt gtcacgaaat tatgtgtatt ggcctaattt      3060
     agacagggac atagagaatg tatgccgcgg gtgcacagcg tgcggagcgg tgcgcgacgc      3120
     gccgccgcat gcaccgcttc acccgtggga atttccacta catccgtggc accgcgtaca      3180
     tgcggacttt gcggattgtg ggggtatgcg gtatttaata atggttgacg cctactctaa      3240
     gtggatagaa gctattgcca tgcgaaaaac ggacgcgcag gcaactatct tagcaatgag      3300
     aggcattttt gctcgtttcg ggttaccgtc attacttgtc actgataacg gacctccatt      3360
     tacctcgcag gaatttaata cattttgtaa aaaaaactgt gttaaacatg tgaccacggc      3420
     tccttataga ccacaaggaa atggagcagc agaaaacgct gttaaaactg taaaaaaagc      3480
     aatcaaacgt gccttgtacg agggaaggaa cgttgccacg gccctagata aatttttatt      3540
     taaataccgt aattgccaac atgcaacgac gggcgtgtca cctgcggtgg ctttgcaagg      3600
     acgtaggcta cgcgggcgtc tcgacgcgtt gcgaccagat gtgtcggccg tagtgcgcag      3660
     cgcacaagag cggcaagtgg ccgctgcagg cggcacgtca cgttcgctgg cgcctaccga      3720
     caccgtacta gcccgtgact atagcacgag gggaggtaag tggctacagg gcacgatagt      3780
     cgaacagacg ggaccggtct cgtacaaggt agacgttgga cgcggagacg tttggcgaag      3840
     acacatggat caaattatac ctatacataa caagaatcgc cactcgttat ctcgaacaag      3900
     cattgtttcc gctagtaaag atgggtcacc aaactcggag gtcccctcgg tccgtacgga      3960
     gactgaagac acatgcgagg acgcttctga cggggtcggt gagtattcac ataagtctaa      4020
     tattgaggcg gcgccagagc cggtaacctc accaccatca ccaccgccgg gagcgtctgc      4080
     tcgtgccctg cgggctcata atcgggcacg tctgcatttg taggaatgtg tttagatata      4140
     agtagatata cataggacta gcttaagggg gagaaata                              4178
//
ID   Gypsy-60_SpEx-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-110
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4189-4189 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 110 BP; 25 A; 19 C; 26 G; 40 T; 0 other;
     tgtaccgtcg gcgtagttat agtttggata tttgtatggt ggcgggtaga ttgtaatact        60
     tatttaataa atcagttagc tgctaaccct cgcctttcat tgacgctgca                  110
//
ID   Gypsy-60_TrVa-I repbase;    DNA;    INV; 4468 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4468
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 305-305 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..4431
FT                 /product="Gypsy-60_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAXTDGVNVPAQIIQSXKPLLTQFPPFNENTDEWEIW
FT                 YERLXQWFIANDIDEAKKIPVFLTLLSNNTYSLLRNLCTPRKPSELXLEEA
FT                 VKALNDHFKPQPSELSQRYQFRETKQKSNQSIAQYVATLKSLSMNCNFNDL
FT                 EINLRDQFVCGIRDINIKKRLLSEPNVTFQKAFEIATTMELTTIEATKISN
FT                 GNSSSTHQERFNNHNQFNERDNLNVNFIDKXASSSDNTRNNYERANWNQRR
FT                 GNGSGGFKKQFNSSKQSKNYQQGQWQGQYGNSSNSSNYWKNRNGRPDQRYQ
FT                 QSEGRFYNQNNNKAQQYNXNVYSNRKCYVCGRNNHFSKDCHYKEFNCRNCK
FT                 EKGHLANMCKNSKSNSKVNHLMECEETVSNLKLFNIKTENEAGEDDKPIIL
FT                 PINVNDQCINFELDTGTKEIIISEELYNSKFSQCKLRPTFKDFESYNGERX
FT                 KVLGFFEPIIKFKDIEKEIEVYVVARGGPPLIGRKAMRKLKIHVIHKLEDK
FT                 LDKEELKKKLLEKFPQVFAENLGTYTKRKMKIELKKDAQPIFIRPYSLPFK
FT                 LKSKVETEINRLVELGILKKVETSDYGTPIVPIIKKDKSVRLAGNYKVTVN
FT                 KQIKIVRHPIPKIDELITSLGPAKYFVKLDLSRAYNQIELCDESKPLLNIS
FT                 THMGVYEYQRLVYGISSGPGYFQREMEQLLLGLKGVIVFIDDILIAGKNLE
FT                 EVNERAIQVLNRLCDSGLTVELKKCEFFVEQITFAGHVLNAEGLKMEEIKI
FT                 KAMIEAPAPKNVNQLQAFLGMVSYYHKFIKDAATLLKPLYKLLEKNSIYKW
FT                 NSECEKAFCNLKKILSSKPVLMQFDPNLPLKLTCDASAYGVGAVLSHILPN
FT                 EDCKPIAYASKTLNHAQQQYSQIDKEAYALHFGATKFYPFLFDNHFEMETD
FT                 HAPLVSIFGPKKGIPTMAASRLQRYALFLSSLDYTIKYCKSKDNIADALSR
FT                 LPITVNELEVPEEEVNYLYHIAEDFNCITSEMIVKETAKDPILAKVIYYLR
FT                 NGWPEKVSEELKPFFNRRLELSIELNCLFLGYRLVIPSKFQNIMLEELHES
FT                 HMGIVKTKSLARSYVWWPQIDSQLEKLIKNCKACNEFKDNPAKVSLSPWKW
FT                 PSKPTHRIHADFAGPINNYFYLIITDAHSKWVEIEPMLSITSSKVINVFQN
FT                 YFARWGIPLHLVTDNGKSFDSLEFENFLKMYNVKRTATNIYSPYSNGAAEN
FT                 AVRTFKNALKKLLSCGKNPSDIIPIFLLNYRSTPHVTTGVSPAELQLGRKI
FT                 RTKFDILMPSIETKVENKQIRQVEQYGGKNYNYFQIDQSVQFRNYTPNKPK
FT                 WELGKIVQQKGEVTYLVEDSNGHVIKRHKNQLRDASSVEINENDEIIEEEE
FT                 WYWHNLESEQNSIVTPNNNEGNSNVRNQGNNAMRQNQIRSRAETIVSRPRR
FT                 VIKPPRRLNL"
XX
SQ   Sequence 4468 BP; 1736 A; 659 C; 808 G; 1246 T; 19 other;
     attggcgacg agatgagtgc gaatagttcg attattctgt gtgaaaatcg cgaacgtata        60
     taactgtgtg tgaacccgcg taataatcgt taacgcgaaa aagttaagtg tctataagta       120
     ctcgatagaa aacgtggtcg aaagtgaaaa tmagtgaaaa tggcggmaac tgacggagta       180
     aatgtgcccg ctcaaattat tcaatcakca aaacctctac taacgcaatt tcccccgttt       240
     aacgaaaaca ccgatgaatg ggaaatctgg tatgaamgat tawstcagtg gtttatagca       300
     aatgatattg atgaagcgaa aaaaattccm gttttcctma cattactmag caataatacw       360
     tattctttgt taagaaattt gtgcacccca agaaaaccgt cggaactckc attagaagaa       420
     gccgtaaaag cattaaatga ccattttaaa cctcaacctt cagaactttc gcaaaggtac       480
     caatttcgkg aaacaaagca aaaatctaat cagtctattg ctcaatacgt wgctacattg       540
     aaaagtttgt caatgaattg taatttcaac gacctcgaaa taaatttacg cgatcaattt       600
     gtgtgcggca ttcgtgacat aaacattaaa aaaaggcttc ttagtgaacc aaacgtaact       660
     tttcagaaag cttttgagat tgcaacaaca atggagttga caacsattga agccacaaaa       720
     attagcaacg gcaattcatc gtcaacgcat caggagcgat tcaacaacca taaccagttc       780
     aatgaacgtg ataatctgaa cgtgaatttt atcgataagm gcgcatcatc atctgataac       840
     actcgcaaca actacgaacg cgcmaattgg aatcagcgac gcggcaatgg tagcggcgga       900
     ttcaaaaaac agtttaactc aagcaagcag agcaaaaatt atcaacaagg acaatggcaa       960
     ggtcaatacg gtaacagtag caacagcagc aactattgga agaatcgcaa tggtagacct      1020
     gatcagcggt atcaacaaag tgaaggaaga ttctacaatc aaaacaacaa caaagcccag      1080
     cagtataata akaatgtgta ctcgaataga aagtgctatg tgtgtggaag aaataatcat      1140
     ttttctaaag actgtcatta taaagaattt aattgtagaa attgtaaaga aaaaggtcat      1200
     ctggcaaaca tgtgtaaaaa ttctaaatct aattcgaagg taaaccatct aatggaatgc      1260
     gaagaaactg taagtaactt aaaactattt aatatcaaaa cagagaatga agctggtgaa      1320
     gatgataaac ctattatttt accaataaat gtaaatgatc aatgtataaa ttttgaatta      1380
     gatacaggta cgaaagaaat tataattagt gaagagttgt ataatagtaa attttctcag      1440
     tgtaaattga ggccaacgtt caaagatttt gaaagctata atggtgaaag amtgaaagta      1500
     ttaggttttt tcgaaccgat aataaaattt aaagatatmg agaaagaaat tgaagtttac      1560
     gtagtagcaa gaggaggacc gcctcttata ggcagaaaag caatgagaaa gttaaaaatt      1620
     catgtcattc ataaattgga agacaaactt gataaagaag aattaaaaaa gaaattgttg      1680
     gaaaaatttc ctcaagtatt tgctgaaaat ttaggaactt atacgaaacg caaaatgaaa      1740
     attgagttaa agaaagatgc acagccaatt ttcatcagac cgtactcgtt accttttaaa      1800
     ttgaaaagta aagttgaaac agagatcaat agattagttg aacttggtat tttaaagaaa      1860
     gtggaaacct ctgattatgg tactccaatt gtgccaataa taaagaaaga taaatctgtg      1920
     agactagcag gtaattataa agtcactgta aacaagcaga taaaaattgt tagacatccg      1980
     attccgaaaa tagatgaatt gattactagt ttaggtccag cgaagtactt tgttaaatta      2040
     gacctaagcc gtgcctataa tcaaattgaa ctgtgtgatg agtcaaaacc tttattgaat      2100
     atctcaaccc atatgggagt atatgaatat caaagattag tttatggtat tagttcggga      2160
     cctggatatt ttcaaagaga aatggagcaa ttattactag gtcttaaagg tgttattgtt      2220
     tttatagacg acattttaat tgctggtaaa aatttggaag aagtaaatga aagagcaatc      2280
     caagttttaa atcgtctgtg tgacagtgga ttaacggtag aattaaagaa atgtgaattt      2340
     ttcgtggaac aaataacatt tgcaggacac gtattaaacg cagaaggatt gaaaatggaa      2400
     gaaattaaaa tcaaagcaat gattgaagcc ccagcaccta agaatgtaaa tcaattacaa      2460
     gcctttttag gaatggtttc atattatcat aaatttataa aagatgcggc aaccctgtta      2520
     aaacctttat ataaattgtt agaaaaaaat agtatttata aatggaattc tgagtgtgaa      2580
     aaagcgtttt gcaacttgaa aaagatactt agttctaaac ctgttcttat gcagttcgat      2640
     ccgaatttac cccttaagtt aacttgtgat gctagtgcat atggcgttgg tgcagtattg      2700
     agtcatattt tgccaaatga agactgcaaa ccaattgcct atgcttcgaa aactttaaat      2760
     catgcgcagc aacaatacag tcaaattgat aaagaagcgt atgcattaca ttttggagct      2820
     acaaaatttt atcctttttt atttgataac cattttgaaa tggaaacaga ccatgctcct      2880
     cttgtatcca tctttggtcc aaaaaaaggg atcccaacaa tggcagcatc tagacttcaa      2940
     agatatgcac tatttttatc aagcttagat tacacgataa aatattgtaa atcgaaagat      3000
     aatattgctg acgcgctatc acgattacca attactgtta atgaattaga agttccagaa      3060
     gaagaagtaa attatttata tcacattgca gaagatttca attgtattac ttctgaaatg      3120
     attgtaaaag aaacagcgaa agatccaatt ttagcaaaag taatttatta tttaagaaat      3180
     gggtggccag aaaaagttag tgaagaactt aaaccatttt ttaacagaag attagaatta      3240
     tcaattgaat taaactgctt atttctagga tatagattag tcattccctc taaatttcaa      3300
     aatatcatgt tagaagaatt acatgaaagt catatgggaa tcgttaaaac taaatcattg      3360
     gctagaagct acgtatggtg gcctcagata gatagtcaac ttgaaaaatt aattaaaaac      3420
     tgtaaagcat gtaatgagtt caaggataat ccagctaaag tttccttaag tccgtggaaa      3480
     tggccgtcta agccaacgca tagaatccac gcagattttg caggtccgat aaataattac      3540
     ttttatctta taattacaga tgctcattcg aaatgggtag aaattgaacc tatgttaagt      3600
     attacaagca gtaaagttat taatgttttt caaaattatt ttgctcgatg gggaataccc      3660
     ctacatttag ttacagataa tggaaaatcc tttgattcgc tagaatttga aaacttctta      3720
     aaaatgtata atgtcaaacg cacagcgact aatatctaca gtccatattc aaatggagca      3780
     gcagaaaatg cagtcagaac gtttaaaaat gccctaaaaa aattactttc ttgtggtaaa      3840
     aatccttccg atattattcc aatcttctta ctaaattata gatctactcc gcatgtcaca      3900
     actggtgtat caccagcgga actacaacta ggaagaaaaa ttagaacaaa atttgatatt      3960
     ttaatgccct cgattgaaac aaaagttgaa aacaaacaaa taaggcaagt tgaacagtat      4020
     ggaggtaaaa actataatta ttttcagata gatcaaagtg tccaattcag aaattatacc      4080
     cctaataaac ccaagtggga attaggtaaa atagttcagc aaaaaggtga agtgacctat      4140
     ttagttgaag atagtaatgg acatgtaatt aaaaggcata aaaaccaatt gcgagatgca      4200
     tcaagtgtag aaattaatga aaatgatgaa attattgaag aggaagaatg gtattggcat      4260
     aatctagaat ctgaacaaaa tagtattgta acgccaaata ataatgaagg caatagtaat      4320
     gttagaaatc aaggaaataa tgcaatgcgt caaaatcaaa taagatcaag agcagaaaca      4380
     atagtaagta gacccagaag ggtaattaaa cctccccgga gattaaattt gtaattcata      4440
     aattaatgaa agattaagga gggaggaa                                         4468
//
ID   Gypsy-60_TrVa-LTR repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-60_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-217
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 364-364 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 217 BP; 73 A; 25 C; 44 G; 75 T; 0 other;
     tgtagtatat gtaataattg tatatagagt aaattagtta tgttggtagt acataaggta        60
     aaatgtaaag gttggtagaa cgtgtggtta tgtaatgtat gaagacgagc actgtcgcgt       120
     atcgtatcct cgaaaatata gttgtctcgt aaaaagtaac gttgtgtcaa gtataattat       180
     tgtcttccta aaatcctaat cctcttagaa tactaca                                217
//
ID   Gypsy-610_AA-I repbase;    DNA;    INV; 4339 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-610_AA_;
KW   Gypsy-610_AA-LTR; Ty3_gypsy_Ele68; Gypsy-610_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4339
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3263-3724] - Integrase core
CC   'CTCCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1256..4327
FT                 /product="Gypsy-610_AA-I_1p"
FT                 /translation="MVKRGKCFVTSSPDLNVLGIDWIDAFNLWSIPFDTLC
FT                 SQVAAEPRPCFDEVTAQLQANHPAVFDNSLGHCTKTKVKLFLKPNAKPVFC
FT                 PKRPVPFNTISLVDAELTRLQSLGIITPIDFSEWAAPIVAVRKPNGKVRIC
FT                 ADYSTGLNEALEANHYPLPTPEEIFAQLNGSAVFSIIDLSDAYLQVEVDEE
FT                 SKKLLTITTHRGLFQFNRLAPGVKSAPGAFQRLVDTMIADIPGVRSFLDDA
FT                 IVFGATWEAHKASLDKLLQRLEEYGFHVKLEKCHFFQTEIGYLGHIVDQNG
FT                 IRPDPAKLQAIASIPAPTNVSELRSFLGAVNFYGRFVRNIHELRHPLDKLL
FT                 KKDSKWQWNSDCQRSFEQFKQVLQSDLLLTHYDPKLPIIVAADASSTGIGA
FT                 VIFHKFPNGSLKAIQHASRSLTPAEQATGQPEKEALALIYGVTKFHKYLLG
FT                 RRFTLQTDHKPLLSIFGSKKGIPLHTANRLQRWALMLLNYDFEIQHVSTND
FT                 FGCADMLSRLIDRSKQPEEDYVVAAISLEEDMVSIIRDTIKQVPISFAAIQ
FT                 SATKADKALQAVLKFIREGWPNEAKSITNPDVRPYFIRQDSLTHVDGCILF
FT                 HDRVVVPSKFRRQILKQFHRGHPGIVRMKSIARSFVYWPGIDNDIEDFVRH
FT                 CVPCCTAGKTPVKTTLESWPMPDKPWSRIHIDYAGPMDGVFYLVVVDPYTK
FT                 WPEVYATKTTTTKTTMKLLTNSFATFGIPETIVSDNGTQFTSHEFQSFCEQ
FT                 QGIHHIRTAPYHPQSNGLAERFVDTLKRTLRKIRSGGETLEEALQTFLQVY
FT                 RTTPTADLGGKSPAEVMFGRPIRTISSMILPPSYSTAAAQSKAESQNQRFN
FT                 KKQGAVSRQFAPGDSVYAQVHQGNSWQWHAATVIERIGRVNYNVFLEDRQR
FT                 LIRSHTNQLKQRAAESVPDRDANKGPSPLSVFFDGFGLDAPSAAVQATATN
FT                 PDPSIPQNENDLSLQAEETDESQYYTEGSDEEDEGNPPQLDPAPVPRTPLA
FT                 RERRQIRLPARFEPYWMT"
XX
SQ   Sequence 4339 BP; 1138 A; 1245 C; 1050 G; 900 T; 6 other;
     gctggcgacg aggattattc tggattgtca agagctccag aattgaaccc gaggaaggat        60
     ggcgacgaac gaagaactcc aagcggcgat tgtgcagatg acccagctac tccagcggtt       120
     ggccgttcct caagcaacca acccagagca agtattggag tccctgtcga ccaacatcag       180
     tgagttttgt ttcgatccgg agaacggcac cactttcgac aaatggtttg cccgttactc       240
     ggatctgttc gagagcgacg cacgaagcct ggacgacgca gccaaagttc ggctcctact       300
     ccggaagttg gacacgtcct cgcattgtcg ctacgtcaac tatatccttc cgacgctacc       360
     gaaggacgtc acgtttgccg ataccatcaa gacgctcaag aaaatcttcg gcaggcagac       420
     ctccattttc cacaagcgct agcagtgctt gcagctggtg aaatccgaga cggaagacat       480
     catcagctac ggtggcaaaa tcaacagggc gtgtgaagag ttcgagtttc atgacttgaa       540
     gatcgaccag ttcaagtgct tgatgttcgt ttgcggtctc aaggctccac gctacgcaga       600
     cattcgagca aggcttcttt cccgcatcga aggtgagacg gcacaagcgc cggtaacact       660
     ccaaacgctg atcgacgaat tccagcgaat cgtcaacctc aaatcggaca ccacgatgat       720
     cgaacatcaa tcaagttcga aaaactcggt ccgcagcgtc tccgagaaga aaaccggcca       780
     ccatcagcgt ccatcgaaac cggaaagcaa gtccgtccca cgaactccct gctggcagtg       840
     cggwcaaatg cactatgtcc gcgactgtcc attckccggc catctctgca aggwatgtaa       900
     ccgcaccggc cacaaggaag gctactgtac ctgcatcaaa aagtcttcaa gcgactcttc       960
     aactcaaccc gggaagaaga agaccaagac cggttccaga tctcaagcca aaggaatctt      1020
     cgtgaaccac atcgcgaaca gcactccaaa gcgtaagtac gtgaccatsa ccatcaacga      1080
     mgtcgctatt tcgctgcaat tkgattccgc aagcgacatt accgtggttt ccaagacaac      1140
     atggcaacaa ctgggacgac cgaagctggc tccgtcatcg atcgaagcat ccaacgcatc      1200
     cggtggacag ctcgccctca tcggcgaatt ccattgtgaa gtcaccctca acggtatggt      1260
     caagcgtggc aaatgtttcg tcacctcatc accggacctc aacgtgttgg ggattgattg      1320
     gatcgacgcg ttcaacctgt ggtcgattcc attcgacacg ctctgcagtc aagttgcagc      1380
     cgaaccccga ccatgcttcg acgaagtaac agcacagctt caagccaacc atccagcggt      1440
     ttttgataac tcgctgggac actgcaccaa aaccaaggta aagctttttc tcaaacctaa      1500
     cgccaaaccc gttttctgtc cgaagcgccc ggttccgttc aacaccattt cgctggtgga      1560
     cgccgagctt acacgtctcc aatcgctggg aatcatcacg ccgatcgatt tctcggagtg      1620
     ggccgctccg atcgttgcag ttcgcaagcc gaatggtaag gttcgcatct gtgcggatta      1680
     ttccactgga ctcaacgaag cgctggaggc caaccactat cctctgccta caccggagga      1740
     gatcttcgca cagctcaacg ggagtgccgt gttcagcatc atcgatctct ccgatgcgta      1800
     tctgcaggtg gaagtagatg aagaatcgaa gaaacttctc accatcacca cgcaccgggg      1860
     tcttttccag ttcaatcgcc tcgccccagg ggtgaagtcg gcgccaggag cattccaacg      1920
     gctcgtcgac acgatgattg ctgacattcc tggtgtacga tcgttcctcg acgacgcaat      1980
     cgtttttgga gcaacctggg aagcacacaa ggcgtctctg gacaagctac ttcagcgtct      2040
     agaggaatat gggttccacg tcaagctgga aaagtgccac tttttccaaa ctgaaatcgg      2100
     ctacttaggg cacatcgtcg atcaaaatgg catccgtccc gatccggcga agctccaagc      2160
     catcgcctcc attccggcac caaccaacgt gtctgaattg cgatcattcc tgggagccgt      2220
     taacttttac ggccgattcg ttcgcaacat ccacgagctt cgacatcccc tcgacaaact      2280
     tctcaagaag gattcgaagt ggcagtggaa ctccgattgc cagcggtcgt tcgagcagtt      2340
     caagcaagtc ctgcagtccg atttgttgct gactcattac gacccgaagc taccaatcat      2400
     cgttgcggcg gacgcatcca gtacgggtat cggtgcagtc atcttccaca aattccccaa      2460
     cgggtctctc aaggctatcc agcatgcgtc aagatccctc actccggcgg agcaggccac      2520
     cgggcaaccg gaaaaggaag cacttgcgct catctacggg gtaacgaagt ttcacaagta      2580
     cctcctggga cgccggttca ctctccagac ggaccacaag ccgctcctat caatctttgg      2640
     ttcgaagaag ggaattccat tgcataccgc aaatcgtctt caacggtggg cgttgatgct      2700
     gctaaactat gattttgaaa tccagcacgt gtccacaaac gactttggtt gcgccgacat      2760
     gctgtccaga ctgatcgacc gttccaagca gccagaagaa gattacgttg tcgcagcgat      2820
     ttccctagaa gaagacatgg tgagcattat tcgtgacact atcaagcaag taccgatttc      2880
     tttcgcagcg atccaatctg ccacgaaggc agataaagca ctacaagcgg tgctcaaatt      2940
     catccgtgag ggttggccaa acgaagcaaa gtcaatcaca aacccagacg ttcgtcccta      3000
     cttcatcagg caggactccc tcacccatgt cgacggctgt attttgttcc acgacagagt      3060
     tgtcgttccg agcaaattcc gacggcaaat cctaaagcaa ttccatcgcg gacatccagg      3120
     catagttcgc atgaaatcta ttgcacgaag tttcgtctac tggccgggaa tcgataacga      3180
     catcgaggat ttcgtccggc actgcgttcc ctgctgtact gctggaaaaa caccggtcaa      3240
     gacaacgctc gaatcatggc ccatgccgga caagccgtgg tcacgcatcc atatcgacta      3300
     cgctggacct atggatggcg tgttttacct ggtggtagtc gacccgtaca ccaaatggcc      3360
     tgaagtgtac gcaacgaaaa ccacaacgac caaaacaacg atgaagctgc tcacaaacag      3420
     ctttgcaact ttcggtatac cagaaaccat cgtctcggat aatggaacac agttcaccag      3480
     tcacgagttc cagtcgttct gcgagcagca aggtattcac cacatccgca ctgcaccata      3540
     ccacccacag tcaaacgggt tagcagaacg gttcgtggac accctgaagc gtaccctacg      3600
     caaaattcgg tcgggaggag aaacactgga ggaagcattg caaacgtttc tgcaagtgta      3660
     tcgcacaaca ccaacggctg acctcggtgg aaagtctcca gcggaggtga tgtttggacg      3720
     gccgatccgc acaatttcgt ccatgatact tccaccaagt tattccactg cagcagctca      3780
     gtcgaaggca gagagtcaaa accaacgatt caacaaaaag caaggagcag tttcaagaca      3840
     gttcgctccc ggtgattccg tgtatgctca agtccatcaa ggtaactctt ggcagtggca      3900
     tgccgccacg gttatcgagc gtatcgggcg agtgaactac aacgtgttcc tggaggatcg      3960
     tcagcggcta atacgttcgc acaccaacca gttgaagcaa cgtgcggccg agtctgttcc      4020
     agatcgtgac gcaaacaaag gtccaagccc actgtcggta ttcttcgacg gttttggcct      4080
     agacgcacca tctgcagccg ttcaagcaac agcaacgaat cctgatcctt ccatccctca      4140
     gaacgagaac gacctgagcc ttcaagcgga ggaaaccgac gagtcgcagt actacaccga      4200
     aggcagcgat gaagaagatg aaggcaatcc gccgcagttg gatccagcac cagtaccaag      4260
     aacgcctctg gcaagggaac gacgacagat ccgtttgcca gctaggttcg aaccctactg      4320
     gatgacttaa ggggggaga                                                   4339
//
ID   Gypsy-610_AA-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-610_AA_;
KW   Ty3_gypsy_Ele68; Gypsy-610_AA-I; Gypsy-610_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-193
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 193 BP; 65 A; 40 C; 35 G; 53 T; 0 other;
     tgttcaatcc aagcaatcta cattgatcgc agcaaccact gtctgcgacc aaagaggaaa        60
     aattttcatt cgaagtgtaa atgtcaagta gaataaacgt atttgtattt agctctaaca       120
     agctccaatt attttccgga agcatctgga aaagtacttc cgctgatctg gaagtacctg       180
     gaagaacact tca                                                          193
//
ID   Gypsy-612_AA-I repbase;    DNA;    INV; 5365 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-612_AA_;
KW   Gypsy-612_AA-LTR; Ty3_gypsy_Ele47; Gypsy-612_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5365
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4302-4769] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2673..5252
FT                 /product="Gypsy-612_AA-I_1p"
FT                 /translation="MLRNDVIERVEGPAEWISPMVVVPKGKDDVRICINMK
FT                 HPNEAIQREHYPLPVIDTFLNKLRGSKFYSRLDITSAYHHVELHPDSRCVT
FT                 TFMSGIGLMRFKRLMFGINCAPEIFQRIMTEMLDGIEGVIVYIDDIVVSGR
FT                 TKEEHDMRLKQVLEVLERNNAMLNMSKCVFGVEKLEILGFEVSASGISPSE
FT                 EKIIAIKNFRPPSSKEEVRSFLGLLNFVGQFIPNLSTRTEPLRKFLRGEVD
FT                 TFGKEQMSSFNDLRLELCNNVRQLGFFDCNDVTEVYVDASPVGLGAVLVQR
FT                 DSKTKVARIVCFASKGLTTAERVYPQTQREALAVVWAVEKFYLYLFGIRFT
FT                 IFTDHKTLQYIYGGKYRDGKRACSRAEGWALRLQPYDFEIKYIPGSTNISD
FT                 VLSRLVSEPGKPFDEHAEHFLFAIGEGPVAITLEEIRHETVKEETLTAVMK
FT                 ALDTKRWSPELFRYQAFEKELGVIDGILVRNDRIVLPAKLRPRALRIAHRG
FT                 HPGVVAMRRNIREKIWWPCMDRDVADAVQECAGCAAVSKQHPPEPMVRKEM
FT                 PDRAWQEIGIDFFSAKECATFLVIVDYYSRFLKVIEMRTTNAVKTIEALET
FT                 VFREQTFPETIRSDNGPPFASEEFAKYCESKNIRLVRTIPYWPQMNGLVER
FT                 QNQGILRALRIAKVTNCDWRKAVEDYVYMYNTTPHSVTEKAPLELMTGRPV
FT                 KDLLPSLRTDPHWQRDVEVREKDAMRKMQGKHYADGRRQAKHSEIEVGDSV
FT                 MLRNFETGKLEPKFRLEEFTVVKKNGSNTIVANKEGIMYRRSVTHLRKYPS
FT                 SSKKNAAESGEQDNSNESPTVHVPHDHSMKRKRGDDDLEPKALKRSVREKK
FT                 MPTRYLQ"
XX
SQ   Sequence 5365 BP; 1589 A; 1054 C; 1361 G; 1357 T; 4 other;
     gttttggcgc agccgattgg atcatggtga gtagttttgg aacagaaagt gatttttttt        60
     ctcccggaag tgtgtggtga tgtatggcgc aaacaaaaag aattaaggga aattgaagtg       120
     atttcggaaa gatatttttc atcgtggata aaactgctta tagtgttggc ttccggaagt       180
     tcggcgtggc gtggttaaat tttcgactgc aaaggagtgt ttcaggagtg aggttggaat       240
     ttcggctkta atagtgtggt ttggaagtga ggttagaatt ccggctgtta aaagcgtgag       300
     gcaatttttt cggcataatg tgattagatt wtcgaatgat tgaaaagctt tccaaatatc       360
     attgtgcatt gtgagtagat tttatgatct caaaatttat ggaagtgtgt gaaagtgaac       420
     agcgagtccg gagaattccg tagcgctaga gtgaaaatag tgaagcgagt ccggagaaat       480
     ccgtagcgct gttatcaaaa gcgagtccag ataaatctgt agcgctgttt ttaaaagcga       540
     gcccgggtaa acccgtagcg ctgttatcaa aagcgagtcc agagaaatct gtagcgctgt       600
     tcccataagc gagcccggat aaatccgtag cgctgtcctt gaaaagcgag tctagagaaa       660
     tgtgaagcat ttttcccaaa gcgagccggg caaatccttg tcgcaggtat tcgaaaacgt       720
     gtccagagag attttacggt gtgaggaatt ctcaactcag cttgtgttta gaaagttatt       780
     gcgccagcgt cacawtgagc tcctaatttg ctttattgca aagcaggaaa gtggttatag       840
     cgagacaatg catattttga ggttaaattg tgaaatcgtc aattttcaat attttctcct       900
     acagagtaac aattgaagaa gctaaaagag gcatataata attccttttg tctctgaatt       960
     tgtatttcag atgaacgaca atggtacatt tggtacactg ttgggggctt tcaacgataa      1020
     agttgatgct caagacttac gtcgtgaatg ggaagagtgg catcgtgcct ttgaactttt      1080
     tcttcagatg cgaaacatcg aagcccaaca tgagaagttg gtcaccatgc taaatcgact      1140
     ggagacttaa actaaataac tatgctgaag aggactgcag cgaattttct acaatttgcg      1200
     tcctgtggca gaggagatag ttccagagcc cgttaaggtg cctttgatgc cgatcgaagt      1260
     cccggagtat gacaacgcgg tgaaacggct agagaaactc ttcattggca agcggaacga      1320
     acgagtggaa ttggaagttt tccggtcgct caaacaatca agtgaggaat ccttcaacaa      1380
     tttcatcttg agactccggg cccaggctgc cagatgtgag ttttcggaac gcgaggagac      1440
     agggctgctc cagcaaatca caatgggggc ttgtgacgag aaagtgcgag acaaaggttt      1500
     ggagaatgtc atgagtttgg atgaagtgat cacctatgcc acgaaccgcg aaatcctgtc      1560
     aaaacaaagg gataagcaga aacctttcag aactgagacg gagttgaaca gcgtgggctc      1620
     gtatcgttcc ggaactcaaa acttgagcga gaagcgtaac acaggaagca atcagcgatt      1680
     tgagagacaa cggatgggta gacgcgtaag atcaggtgag agtcgtttcc ggagcgaatg      1740
     taaccgatgc ggttcgctcc gacacgcagc gtgactcacg agattgtttc gctcgaggtg      1800
     cgacttgtaa caattgcgga cagcggggac actatgcaag gaagtgtgac aatcgccgca      1860
     tgcaacgtgg aagtcgctta tcgaaacggg aaccgagacg caacgacttc awtgaagcta      1920
     actcggtgaa cacatctgaa tcctggggaa aggatgattc tcatcgctca actgccgagg      1980
     gcatcgctaa ggtggagtaa ctttaattat tttgttcttt tttgtaatat cttcggcgaa      2040
     tcatattgaa ttaaatgagt tgaaataaaa gatatatgat ttacacatgc ttttccatat      2100
     taggtggata cgattaccct gaagaatgac tccgtattgt gcaatattga caatgtgccg      2160
     gtgaattttg taattgattc cgggtcctct atcaacgccg ttacggaaga cgtgtggaat      2220
     gagcttctcg ctaagaaagc caaaatattc aagaaaaagt acaaatgcga ccgaaaattt      2280
     tatgcgtatg caaatcgaga tccattgaat gttttggctc tttttgaagc tcgtatttcc      2340
     gtcaatccta cgaaacctga aagctatgcg gaattcttcg tgatcgatgg tgcacggaag      2400
     tcccttctaa gtaagcgtac gtcagaagag ctgaagcttt tgaaaatcgg actagatgtt      2460
     ctgcatctca acgaagacga cggtgtaaac agcaagccat ttccaaagtt tccgggggtc      2520
     caagtgaagt tatccattga ccacgcagta cctcccaaga agatcgcata cctgagagtg      2580
     ccttctgcta tggaacaaaa ggtaatataa tatcaatcaa aatgccaggt tcaacagtta      2640
     tatgtttata ggttcatgat aaaatacagg aaatgctccg taatgatgtc atcgaaaggg      2700
     tagaagggcc cgctgaatgg atatcaccaa tggtggtagt ccctaaagga aaagacgacg      2760
     taagaatatg catcaatatg aagcatccaa atgaagctat ccaacgggag cattacccgt      2820
     tgcctgtcat cgacaccttt ctgaataagc ttagaggatc taagttctat tcacgattgg      2880
     acataacgtc cgcataccat catgtcgaac ttcaccccga ctcaagatgc gtcacaacct      2940
     tcatgtccgg cataggcttg atgcgtttta aacgccttat gttcggcatt aactgcgcgc      3000
     ccgaaatttt tcaacggatc atgacggaaa tgcttgacgg cattgagggc gtcatcgtct      3060
     atattgacga tatcgtcgta tcgggaagga ccaaagaaga acacgacatg cgactgaaac      3120
     aggttttaga ggtgttagaa aggaataatg ccatgctgaa catgagtaaa tgtgtctttg      3180
     gagtcgaaaa actagaaata ctaggctttg aggtgagtgc gtccggtata agtccatcgg      3240
     aggagaaaat aatagcaatc aaaaacttcc gaccaccatc atcaaaggaa gaagtccgta      3300
     gtttcctggg attgctgaat tttgttggtc agtttatccc aaatctctct acgaggacag      3360
     aacccctgag aaagtttctt cggggagaag tagatacatt cggtaaggag caaatgagtt      3420
     cgtttaacga cttgcggttg gaactgtgta acaacgttcg gcagttagga ttttttgact      3480
     gcaatgacgt taccgaagtg tatgtggacg cttctcctgt cggtctcggg gctgttcttg      3540
     tccaacgaga cagcaaaact aaggtagcac ggattgtatg cttcgcctca aagggcttga      3600
     caacggccga aagagtgtat ccacagacgc agcgtgaagc gttagctgtt gtatgggccg      3660
     tggaaaaatt ttacctgtac ctcttcggca tccggttcac gattttcaca gatcacaaaa      3720
     cccttcagta tatatatggc ggaaagtacc gtgacggaaa acgtgcgtgt tcaagggcag      3780
     aaggctgggc gctccgctta cagccgtatg actttgaaat taagtacatc ccgggatcga      3840
     cgaatatctc ggatgtgctt tctcgtctgg tgagcgagcc cggtaaaccg tttgatgagc      3900
     atgccgaaca tttccttttc gccataggag aaggacctgt ggcgatcaca ttagaagaaa      3960
     tcagacatga aactgttaag gaagaaacgc tcacagcagt aatgaaggca ctggacacca      4020
     agcgttggtc gccggaactc ttcaggtatc aagcatttga gaaagaactt ggagtaatcg      4080
     acggtattct ggtgcgaaat gaccgcattg tccttccggc gaaacttcga ccaagagcac      4140
     taagaattgc acatcgtgga catcctgggg ttgttgccat gcgaagaaat atcagagaga      4200
     aaatttggtg gccgtgcatg gaccgggacg tggcagatgc cgtgcaagaa tgtgctggtt      4260
     gtgccgctgt cagcaagcag catcctcccg agccaatggt gcgtaaagaa atgccggacc      4320
     gtgcatggca ggaaattggg atcgactttt tctcggccaa agaatgcgca acgtttttag      4380
     taatcgtaga ttactacagc cgtttcttga aagtgattga aatgagaacc acaaatgctg      4440
     ttaaaactat tgaagcactg gaaacggtgt tccgtgaaca aacttttccc gaaaccattc      4500
     gtagtgacaa cggcccaccg tttgcgagcg aggagttcgc aaagtattgt gaaagcaaaa      4560
     acatccgatt ggttcgcacc ataccctatt ggccgcaaat gaacggccta gtagaaaggc      4620
     aaaatcaggg gatcctccgg gccctacgca ttgcgaaagt taccaattgc gattggcgga      4680
     aggcagttga agattacgtg tacatgtaca atactacacc acattcggta accgaaaaag      4740
     cgccactgga acttatgacc ggtcgtccag tcaaggatct tttgccctcc ttaagaacgg      4800
     atcctcactg gcagcgagat gtggaggtgc gagaaaaaga tgcgatgaga aagatgcaag      4860
     gaaaacacta tgcggatggg cgcagacagg ccaaacactc cgaaatcgaa gtgggtgatt      4920
     ctgtgatgct gcgtaatttc gaaactggta agcttgaacc aaagtttagg cttgaggaat      4980
     tcacagttgt gaagaaaaat ggaagtaaca caatcgttgc taataaagaa gggatcatgt      5040
     accgtcgatc tgttacgcat ttgcgaaaat acccatcttc ttctaagaag aatgctgctg      5100
     aatctggaga acaagacaat tcaaacgaga gtccgactgt tcatgtgccg catgatcatt      5160
     caatgaagcg gaagcgaggc gatgacgatc tggagcctaa ggcactgaaa cgttcagtac      5220
     gagagaagaa gatgccgacc agatatttgc agtgattttt ttttcctacc gatgtaatta      5280
     aaaaaaaaca gtctaataaa attatcattc ctcgtataac tttgattttt gttggagaag      5340
     gagagagatg tagagtctta gcctt                                            5365
//
ID   Gypsy-612_AA-LTR repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-612_AA_;
KW   Ty3_gypsy_Ele47; Gypsy-612_AA-I; Gypsy-612_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-271
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 271 BP; 75 A; 60 C; 63 G; 72 T; 1 other;
     tgagttttac acaggaattt gattaagtgt acatcctgga attctactac ttctaaaagg        60
     ctggtaaatt gaagtgtaga atccatctcc tctgaaaagc ctttatgcac aaacgtcaag       120
     gtcaatgtgt gagtgtgttc gagttcctaa gcggttagag gtgaaactcg tggacgacga       180
     ttgactcggc cacttggatt cagaccagcg tagcggacgg tccgacttat tcaacgctcc       240
     cgtagttkgc aatacccgaa ccgactcaac a                                      271
//
ID   Gypsy-613_AA-I repbase;    DNA;    INV; 7897 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-613_AA_;
KW   Gypsy-613_AA-LTR; Ty3_gypsy_Ele177; Gypsy-613_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7897
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3150-3653] - Reverse transcriptase
CC   Positions [4719-5198] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2754..5597
FT                 /product="Gypsy-613_AA-I_2p"
FT                 /translation="MIDVGSGPETLETVTPRDKKVLCFTIEPSTELPTIEQ
FT                 EENDETLDIPVYEGPTESVADPDNIETEHKLTEVQRVQLLEVIKRFELTSE
FT                 GKLGRTNLIEHEIVLKEGVKPRNPPMYKCSPYVQEAINAEVERFKKLDAIE
FT                 ECYSEWTNPLVPVPKKNGKVRVCLDSRRINKLTVKDSYPMRNMQDIFRRLG
FT                 KAKYFSVIDLKDAYFQIPLKEDSRNYTAFRTAKGVFRFKVLPFGVMNAPFT
FT                 MSRLMDKAIGFDLEPFVFVYLDDIVIASETFEEHLRLLKIVGERLNKAGLT
FT                 ISIEKSRFCRKQVMYLGYLLNESGVAIDSARIQPILDYARPRNQEDIRRLM
FT                 GLAGFYQRFIKDYSRITAPITDLLTKENKKVIWTKEAENAFNELKSVLTSA
FT                 PILGNPDFTKTFTIESDASDRAVGAALVQEQDGETRVISYFSKKLNRTQRR
FT                 YAAVEKECLGVLSAIHHFRHYIEGTKFRVVTDARSLLWLFNVGAETGNAKL
FT                 LRWALRIQAYDFDLLYRKGKANITADCLSRSVEVDAITASQPDNDYEELME
FT                 EIKTNPVKYKNYRILDGIVFRYVKIKDRLSDPRFEWKQLPMESQKLDVIRK
FT                 EHDKAHFGYEKTLAAVKQRYFWPRMNGEIKKFCRECLKCQMSKSGNINVTP
FT                 PMGSQKPVEYPWQFVTLDYVGPLPPSGKNRSTCLLVATDVFSKFVLVQPFR
FT                 EAKANSLADFVENMIFRLFGVPEIILTDNGSQFVSKRFKDLLQAYHVNHWL
FT                 TPAYHPQVNNTERVNRVITTAIRATLKRDHKHWADDIQSIANAIRTAVHDS
FT                 TKHNPYFVVFGRDQVSDGREYGWIRDNYRPKDDDNEKNVVTDRRKKLFSEI
FT                 KTNLAAAYKRHAKTYNLRSNANCPAYMVGEKVLKQTFDLSDKGKGFCKKLA
FT                 PKYEPAVVRKVLGTNTYELEDDSGKRIGVYFANRLKKLHSPSSN"
XX
SQ   Sequence 7897 BP; 2316 A; 1550 C; 1860 G; 2160 T; 11 other;
     ggctggcccg ttatatttgg cgcccaacaa tacaaggctt tttaagattt aagttgtagc        60
     tgactgttgt aatataactt ttcgtattta cccatttttg ttgcatgtct tagcacatat       120
     ttatattgaa agtgtgaaat tcattgtaag ggaactcaaa ttttgtgaat tttcgatcaa       180
     tatatttgat ttcgttgttt ttgtatttag gtttataatt tttcgtttat ttcaataaac       240
     atcaatcatt tgtctaattt tgttcatttg ttacattgtt tgcttcatat ttgtattatt       300
     tattccttac tgttatttat tgctatttgt tatttattcc ttactcttaa atatttgcta       360
     attaataagg taactcctaa gtcgattgtt cttaaataag tgtgtatgca atttagtgcg       420
     gttgattttt cttgtctttg ttgtatttct ggttgattgt agcttctgaa attatacaaa       480
     aatgaatcaa ttatttcccc gagccgaaga tctcactctc gaagagatca attatgagtt       540
     cgttattcga catcaaccag aagaagtttt taagctcgaa ttgtcaggca aacaaagaca       600
     tttgagacaa ctattcaagg aagatcagaa agaagggcgt aaccatcgtt cgccttactc       660
     aatcagcgag gaagcgtcac acatcgaagg cagaatagaa aatttagcaa aggcattgga       720
     gaaaagggta gagaccaagt tcgaatctcg ggtaattcat tactggtatc gggtwaaaag       780
     ggctattgcg aggaatgatg aagagatgag aatgagaaga gacttgattt gtaaaattga       840
     aaggattatg caggactttc agtttgggcc gtcgttatct ccttacaaaa cgcaaagcaa       900
     tacagtcktt caagkcagcg aagagggagc kgctggcaaa actatgaacg cagacgcagg       960
     agtaagtcaa aggtcagaat cttcgaatca matgaatgac ctttctcagt atgctaaagg      1020
     tgctattcct aagggaatga gtcattcacw ccaggaaack gtagggaatc ctgagccaga      1080
     gtttgtggtc tcgcgtmaag aatgggaaga catgaaggca atgatgatga gtctgatgaa      1140
     tagaatggcc ggtgcgaatc cgaatgacag ggktggaagt gtaggtaacg atagccaaag      1200
     gtcacgaagg tcggaaatag aaaggcagga accacctaga gtgattgaac caccgtacag      1260
     ttttcagcaa cgtgcagtta gaccaatatt agagtcaagg gactcaagca cggacaatta      1320
     cagtgctcgt atacatcggt taccaagaga gagctttggc ccaagcgacg aagaggacga      1380
     ttaccgacat catcgagcaa gagaatttcg ggctcttcca agatacggtg taaggagaga      1440
     tcgagagcag aataatcgga tagagaaatg gaagctgcgg ttcactggcg aacctaggtc      1500
     catgtcaatc gagaactttc tttataaggc caagaagtta gcagaacgag agggtgtgcc      1560
     cagagaaatt ctacttcgtg acatccactt actgcttgaa ggcgctgcgt cggattggtt      1620
     tttcacgttc gtagatgatt tggacacatg ggacgttttc gaaaccaaca ttgtctaccg      1680
     ttttggtaac ccaaacaagg accaaggaat cmgaacgaaa attcacgagc gcaaacagca      1740
     aagaggagaa tctttcatag ctttcgttac ggaaatcgaa aagctaaaca aaatgctwtc      1800
     tcggccgttg tcagcgcgga gaaagttcga gatagtctgg gacaacatgc gacagcatta      1860
     tcggtccaaa atttctattg tggaagttaa cgatcttcaa caactgacga ggttgaatta      1920
     caggattgac gcagctgatc cccagttaca gtaccagact ggcgatacct ctctacgacg      1980
     acccatcaac cagattgagg cggaagacac cgactacgac agcgaccggt ccgcgccggt      2040
     gaatgaaata agaggtcgat acaacagaga cgttcggcca ggacagaaca acaaccgaga      2100
     aagacggaat caacagcaga gtgatccaaa ccaacaaacc agaagagggg atcaaacaac      2160
     gccgccaatg gcctgctgga attgccagaa cgaaggacat ggctggaggc aatgtaataa      2220
     gccgaaagta gtattttgct acggttgtgg gaatctaggt aggacaacgc gaacctgtga      2280
     gcgttgctcc aggaattacg gagtcccacc ggctgaacag cagggaaacg aatagagggg      2340
     tgtaagtcag ggaatgcaag catccgtgtg caaaaagaag ttcccaaaat acctatgaca      2400
     aatctaacat acgatccttt attgcaattt atcacattaa gatacgggtt agtaagtgcc      2460
     cgcatattaa agtaaaaatt ttcgattcag actgggaagc tttactagat tccggggcgg      2520
     ggataagcgt tcttaattcg gtggaggtgg tagagaagta cggcttgaag atacagtcag      2580
     cgtcaataag agtaagcact gcagatgggt ctaattacgg atgtcttggc tatgtaaata      2640
     tacctttcac gttcaagaac atcacgaaag ttatccctac gattatagtc ccagaaattt      2700
     cccggaatct gatacttgga gcagattttt gggatgcatt tgggataaaa ccgatgatcg      2760
     atgtaggtag tggaccagaa actttagaaa ctgtcactcc aagggacaag aaggttctct      2820
     gtttcaccat tgaaccatcg acggagctac caacgattga acaggaggag aatgacgaga      2880
     ctttggacat tccagtttat gaaggcccaa cagaatccgt ggctgatcca gacaatatcg      2940
     agacggagca caaactgacc gaagtgcaga gagtgcagtt gttagaagtc atcaagcggt      3000
     ttgagctaac atcagaggga aagctgggaa gaacgaacct catagaacat gagatcgttc      3060
     tcaaggaagg tgtaaaacct cgaaatcctc cgatgtacaa gtgctcacct tacgtccagg      3120
     aggcaatcaa tgccgaagtg gaacggttca agaaacttga cgccattgaa gagtgttata      3180
     gcgagtggac gaatccactc gtcccagtcc cgaaaaagaa tggcaaagta cgggtgtgtt      3240
     tggattccag aaggatcaac aaacttacag tgaaggactc ttacccaatg cgcaatatgc      3300
     aagacatatt ccggcgattg ggaaaggcca aatatttttc ggtaatcgat cttaaagacg      3360
     cttactttca gatccctctg aaagaggaca gtcgaaatta caccgcattc cgtaccgcta      3420
     aaggagtgtt tcgcttcaag gtgttgccgt tcggggtgat gaacgcacct tttacgatgt      3480
     cgcgtctaat ggacaaggcg attggattcg atttagaacc attcgtcttc gtttacttag      3540
     atgacattgt catcgcctcc gaaaccttcg aagaacatct tcgacttttg aagattgtgg      3600
     gagagagatt aaataaggca gggttaacga tttccataga aaagtcgcgt ttttgtagga      3660
     aacaggtcat gtaccttggt tatttgttga acgaaagcgg ggtagcaatc gactcggcac      3720
     gcattcaacc gattttggat tatgctcggc cgaggaacca ggaggatata cgcaggctca      3780
     tgggtttagc gggattctac cagcggttca taaaggacta cagtcgaatc acagccccaa      3840
     ttacagattt gctgaccaag gaaaacaaga aggtgatttg gaccaaagag gcagaaaacg      3900
     cgttcaatga gttgaagtcg gtgctgactt cggcaccaat tttgggaaac cctgatttta      3960
     cgaagacctt caccatcgag tcagatgcgt cggatcgtgc ggtaggagcg gctctggtcc      4020
     aagagcagga cggggagacc cgcgtgatca gctattttag caaaaagttg aatcggacgc      4080
     aacgacgata cgcagcagtg gaaaaggaat gcttaggagt gctttccgcc attcaccact      4140
     tccggcatta tatagaaggg accaaattcc gagtggtgac agacgcacgc agtctgctct      4200
     ggctgtttaa cgtaggagcc gagaccggaa acgcgaagct attaaggtgg gcgctccgga      4260
     tacaagcgta tgatttcgat ttgctgtatc ggaaaggaaa ggcgaatata accgccgact      4320
     gcctatctcg atcagtggaa gttgatgcga ttacggcatc acaaccggac aacgactacg      4380
     aagaactgat ggaagagatt aagactaacc cggttaagta caaaaactac cgaattttgg      4440
     acggaattgt gtttcgatac gtgaaaatca aagatcgatt gagcgaccct agattcgaat      4500
     ggaagcaact tcccatggaa tcgcagaagt tggatgtcat caggaaggag catgacaagg      4560
     cccatttcgg gtatgaaaag acactggcag cggttaaaca gcgctacttc tggccaagga      4620
     tgaacgggga gataaagaag ttctgtcggg aatgcctaaa atgccagatg agtaagtcgg      4680
     ggaacatcaa tgtcacgcct ccgatgggtt cgcagaagcc agtagaatat ccgtggcagt      4740
     ttgtgacctt ggactacgta ggtccactgc cgccgtcggg gaagaaccga agtacgtgtc      4800
     tcttggtggc cactgatgta ttcagtaagt ttgtcctcgt gcaacccttc agagaagcaa      4860
     aggctaactc gctcgctgat tttgtagaga atatgatatt tagactcttt ggggtaccgg      4920
     agataatcct gaccgacaat ggttcccaat tcgtgtctaa gcgattcaag gatttgctgc      4980
     aagcttacca cgtgaaccat tggttgacgc cggcctatca tcctcaggtc aataataccg      5040
     aacgagtcaa cagggttatt acaaccgcca ttcgtgcgac gctcaagaga gaccacaaac      5100
     actgggcgga cgatatccag tccatagcaa acgctattag aaccgcggtg catgattcga      5160
     caaagcacaa tccctatttc gtagtgtttg gccgcgatca ggtttctgac ggtagggagt      5220
     atggttggat ccgtgataat tacagaccga aagacgacga taacgagaag aatgttgtta      5280
     cggataggcg aaagaagttg tttagcgaaa ttaaaacaaa tcttgcggcg gcgtacaaaa      5340
     ggcacgccaa aacttacaac ttgcgctcga atgcgaactg tcctgcgtat atggtagggg      5400
     agaaggtctt gaagcagaca tttgaccttt cagacaaggg gaaagggttc tgcaaaaagt      5460
     tagcccctaa gtatgaacct gcggtggtta gaaaggtact gggtacgaac acgtacgaac      5520
     ttgaagacga ttcaggcaag agaatcggtg tttacttcgc caatcgactc aaaaagttgc      5580
     attctccatc gtctaactag aggatggaag gttttccagc tatgtatttc tttaagaagg      5640
     accactactt gatgaacaaa aacacctacg gggtcaaaac atctacggac agatcgaagg      5700
     actcgtgtta aggaagtttt tcaactgact tgcactgagt gtaccgactg atcctaatac      5760
     gaagacaaat tttgaacaat ttatgtaaag cgatttccag ctatgtatct cttttagagg      5820
     gaccactaat tttgatgaat gaaaacacct acggggtcaa aacatctacg gacagatcga      5880
     cggactcgtg tgaagaaggt tcttgaactg actagcactg agggtaccga ctgagcctaa      5940
     aacttcgaca aactttttaa caagctatgc aacttttgaa aaagcaacta cgaacaacta      6000
     agattcaata aaataccgta aaagggcaga attccaccta acaaaccacg attgatgatt      6060
     agagaagacg cgaataccca atcaagactt tctcactcgt tagtgagctg tacatatgta      6120
     aatattagtt tgttagttag cctagttccc tatcacttaa atttagatta gtacttagct      6180
     taaattagtt gaaattacca aattaactca cgatttcctt ttgtggattc gtagtattgt      6240
     ctcttttttt cgttggtcga gcgatacttg tatataagtc tggtttcttg tctttaatca      6300
     gccagcgttg taaatatcct aaaaataaga attgttgaat ttttgttatt tatttactta      6360
     cgttatttat ttttcttagt ctttcgtagt tcctttgtcg atttgaagtc aaacaccgtt      6420
     tcgttctcaa ttttttcacg tccttatccg tccttagtcc cattatatcc taggaagtaa      6480
     gttctcacag gtggaattat accttcacct agcacctgtc ctcgtccata gtaatattag      6540
     tcaagtccat ccttcaatta cgtccttttt ttgtcccgtc catatagttt gtccaaagat      6600
     ccttctgtag tagtaagttt acatttccag tcccagtttc tcatgtaaac attacgtcat      6660
     atcgtctctt ttttttcgtc atttgagttt gtccgttttc gtattccgtc cattcaacca      6720
     caaaggtttc tattagaagt ccttcttctt cctctctcgc ttcgtttcat cctacgctcg      6780
     atagccaatc catagttttt ttagtcacct gtaaataaat aaaacaaaca acttacaccc      6840
     gatagattgg aacgactgaa tagggtactc tcctgaatgc cagacgtcct gagggcggaa      6900
     aatcgtcctt ttggtgccgt tttccgcgat attcgacact tttccgcgaa acgtgtcctc      6960
     cagatcgcga actgatacgt cttttgtttc ctctttctga gtttggcagt acggttcagt      7020
     gttgacatgt atgtgtgata gaccggtcaa attgagagtg agtgcgcgcg tgtcggagtt      7080
     ggattccggt gcgtatttga gtgtatgata tgagtgaatg gttggtattt ttgtgatttc      7140
     gtgtgtttct tagagatctt ttggtagtcg gatattttct ggcgtagaaa gattctctca      7200
     aggaagaatt tgagtttcga tgttacagtg agcacatttt gcggatgaga gactccgtag      7260
     ctgcgaactg taaatagaaa cggacccctt tagtgaggaa gttggtgtct cgcaatgctc      7320
     gctacgcgct gggtgagagg caaccagacc tacttgctag ttttcgttca tgtgaatgtt      7380
     tttcgtaaac gttatttgtt gatcggcaat gtcctggtgt aaaataatgt ttcagtaatt      7440
     tatgtgagct tgctcagagt tgtgcacgat tctggagttg aagccgtttt catgttgaat      7500
     tttgagattt atgtgtatga atgaggtcat ctacgttatg ttctgtcaaa caaagtagct      7560
     tccgtagtct caatgttgtt acctagactt tcgagcgaat tttcggccta cccctatttc      7620
     tttttctatc agtaagcgta tttgaaagat aattattaga ttttcgctgg agaccggaga      7680
     ctaacgtcgc tgatggtcag tagcagtcaa gctctataat ggaacttgat ctgtaaattg      7740
     agaaggagtt gacttcggtt aacgatgaac ttatatgacc ccgaaaatcg aaaaatattg      7800
     atcttatgcg tcttgcttgg cctacgaaaa tttgattggc tattttcatc tccattttca      7860
     atgccaatca aattttcgta tttttagtgg ggaatgt                               7897
//
ID   Gypsy-613_AA-LTR repbase;    DNA;    INV; 2178 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-613_AA_;
KW   Ty3_gypsy_Ele177; Gypsy-613_AA-I; Gypsy-613_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2178
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2178 BP; 554 A; 487 C; 533 G; 604 T; 0 other;
     tgtagcaagt acgctttatt atttattata aattctttgt taaatttaag actgtaaata        60
     ttacatgtta ttttgttatt tgttaattaa agatttgtta atttattaaa ctttgcatgt       120
     ccattcgttt ttctaaatta aatctccaat tcaatcaccg ccaattgctc tcatagagaa       180
     tatacgacat agttactcac gcctaaaacg agtgtcttga gttccctatg gtcagctacc       240
     aggaaagcgc atggttttgc aagcctgttg agcgtcatga cgccacccaa aatccgcttg       300
     ggtcgcgggc actgacccat atgcctatgc tattcaggat gcgttgacct tttccttgtt       360
     cggcattcca cgcttgtcac gaagcttagc gagcaagctg actagatggt ttgaatagtc       420
     agttggaatg agatgcacga cttcgggaaa tattgcagat aaattccttt gatgctcggt       480
     ttcgcaaaat ttaacttcgt tgaatttcgc gaagtctggg gacaatgttg aaaaactgcg       540
     gcatctgagg attactccag cctcgaatcg ttcactttgt tccgtttcgt ggaagaggca       600
     agaacggtct attttgttac cgtgccgcgg tgtgattgtg aaggtgaaag tgacatagga       660
     aacttaagat atttagctaa tttatgttct tatatccctc tagttgagcg cagtagtcaa       720
     ttatgcgcaa gcagatcatt atttgcagat cgtcagtgta gtgcgttgat cagtgtttcc       780
     aaggtaatgg acgttattgg aaaggtgaaa caatatttta attccttccc cacgtgtgcg       840
     catgaaaatt taccggaata ggtcgtggca gcataggcga agccgtcaca ctgcgctctc       900
     cgtttgcgac cgtttttgac cccacgcaac ggcttcaaag cttcccgggg tacacgtggc       960
     cggagaagga cgcgatcgcc aatttcgcgc ctttggcagg caagcctacc atttcgtcaa      1020
     ccagcaagag tcgagaggag accaaccccc cctgcagcga gcatcgaagc accgaacaag      1080
     ccagcacgcc accggagcaa attgccgacg gcgcctcaac gtttgtttgc gcgccactgc      1140
     aggatcgagc gtttgtaccg cgcttacgcg taagcccgcg caccggtgag ggagacacca      1200
     ccaaccgcat cgcccgttcg atcgccatcc cggcgagagt accaggctgg aggtagtgcg      1260
     ctaatctgcc ccagtcaacg taagcgtctc cccacccaca tcaaaaccct aggtaaccgt      1320
     gagtactatt gcatgcatgt ttgttagtgt cgtccatggc catgtgaccc aatagaggca      1380
     caacaacatt attttgctag tccgtcatag cccataattc ggcggcgcta gcatagaact      1440
     cacccgagag tgagaggtgg aggtgtgagc tccccggagc gaatgtcgga gttcgaagct      1500
     tgaagagaag aggagcagca gaagatctcg cgcatcgagt gcgcgccgca ggagaagttg      1560
     atccgcacac acagaaatag ctagagggaa gttagtggga aagagagtag actaggccta      1620
     ggcaatgtag agagcgatag tggaaataaa gcatgtataa ctagttttgg agcaatccat      1680
     gtatttttgt tcccccaata aaatttagtt tgctccatgc acggaggaaa aagctctatg      1740
     tattttgaat gtatttagtt agcgtctttt aaggtctcta tgttgcttcg cgtccgtatg      1800
     tagttttttg tagtgatttt gggttattta ctgggtggtc agcccgaatc tgactttatg      1860
     ctattttggg actgttcttt agttttctgc ggattgggac gggtgaactt tttggactgg      1920
     acctgtgagg aaaaactccg cctttataac ttgtcctcag ccgtttatcg gaggaattta      1980
     tttgtaagct tttctgaagt tgatgtgtcc gctcggaaac gtgaagtacg acggactatt      2040
     tgagtcagcc agtcagctta ctcactaata aagtgaccct tccccaagaa ggtctcaagc      2100
     cgggcaacgc aatctttgtt gggtggtctc ctttcggagt ggcgcataag ctacccaatt      2160
     tcaaaagtaa gctcgaca                                                    2178
//
ID   Gypsy-614_AA-I repbase;    DNA;    INV; 6062 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-614_AA_;
KW   Gypsy-614_AA-LTR; Ty3_gypsy_Ele126; Gypsy-614_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6062
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5011-5490] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           850..5841
FT                 /product="Gypsy-614_AA-I_1p"
FT                 /translation="MEQIEFEFSILKNIRNNLLKKPKNRIYTRSTILNKLK
FT                 ETKEAHDNISDILTILETDLDIETFNKINKKAKEISSAIYLQLHQMLVTST
FT                 TSSKFKTYAILVLSVVRFRKTFTMANVEIIKTVSTLMPSYDGSMDKLDSTI
FT                 DALEVIETLVTDANRATIINVILTKLSGRARHTFVVKPADLQELKTKLKAV
FT                 VTVTPPETIISKMIATKQKTDLATFTTEIESLATQLENAYISKKIPNDVAK
FT                 ELSTKEAIKHMASGLKNEKTALILQAGTFNQLAEAINKIHEVNPTCEANVM
FT                 FARANRNANKPSQSNETWMSRNAPYNQNRFGNRYSNQRFNPNSQGRSSSRH
FT                 QQYGHRYEGRNDDRQSFSRRQNFNHTQQGHYSHQPNGHWRSNNNNNNHNCN
FT                 TDRNDRNVYSTENGRGPAATPQASCAVPMNQQGETRHQATNPIQQVQRTNN
FT                 QGVNVYNCNINYSNFVTLKLEMCEKPVTLIVDTGADVSLIKENVLKHLTNI
FT                 YIKQNCIINGVTDGKLETIGCTYTNILLNNVQIPHTFQAVTKDFPIFTDGI
FT                 LGRDFLINYECNICLKTWLLTFEYNHEKFEIPIQDKYNDHFIIPPRCQIIK
FT                 QINLINVTKESVVLSKQIKPGVFYSNGLIDKDTQYINIMNVNNCSEKISMN
FT                 DVLSNIKILDSSEFEKVNNKITRKSNKNRVVKLKEELNLTQVSDDIKPQLV
FT                 KLCTTYNDIFALENDSLSTNNFYKQKITMEDESPVYIKNYRIPEAHKIEVD
FT                 KQIDKMLNEKIIQPSVSPYNSPILLVPKKSNSDEKKWRLVIDFRQLNKKII
FT                 ADKFPLPRIDEILDNLGRAKYFTTLDLMSGFHQIELDENSKKYTAFSSSSG
FT                 HYEFNRLPFGLNISPNSFQRMMTIALSGLPPECAFLYIDDIIVVGCSINHH
FT                 LKNLTMVFEKLRQYNLKLNPSKCHFFSSDVTYLGHHITDKGISPDPSKYFT
FT                 IEKYPTPSNTDDVRRFVAFCNYYRRFIQNFAEIAHPLNKLLRKNVKFNWST
FT                 ECKTAFETLKSQLLSPQILQFPNFKKQFILITDASKAACGAILAQKYDDVD
FT                 LPIAYASKAFTKGESNKSTIEQELTAIHWAITHFRPYLYGRKFLVKTDHRP
FT                 LVYLFSMRNPSSKLTRMRLELEEYDFEVQYVQGKTNVGADALSRINIDSET
FT                 LKNLQILRVETRAQKKQKVQQLSNEQQTNVILDDEPDQLKIFESLNINEIY
FT                 ELPKLTIEKTSNIKNHGIMCKIMNKKFNKESARAPFIPLKINKMKETLGKL
FT                 LTKIDEKAHKLKITRIALALSSTIFKMMSINEFKKACNQHLRFIQILLYEP
FT                 QQEVDNKNEIAKIIQENHDSAIGGHTGINRLYKKLKNFYIWPNMKNTIKNY
FT                 VNNCIKCKQNKHSSKTYEKFEITPTPQKPFSIIAMDTIGPFTKSNSGNRYA
FT                 LTIQCDFSKYIIVKPIPDKQAETLAKAFIENCILIYGSPSIIRTDQGTEYK
FT                 NEVFNNINQMLQITHNFSTPYHPETIGSLERNHRCLNEFVRQFVNESHNDW
FT                 DDWLSYYAFCYNTTPHSDFPYTPFELIFGRTATLPNNLKNPKEIEPIYNYE
FT                 QYYSELKFKMKTAAQRTQELINKAKLKRQQNQENIAKPSSIKKGDYVMIEN
FT                 ENRSKLDKIYKGPYKVTEINHPNVTIFDDNKNQYYTIHKNKLVKFK"
XX
SQ   Sequence 6062 BP; 2410 A; 1019 C; 978 G; 1655 T; 0 other;
     tggcgaaccg tcgacagtct tgatggtaaa ttagtagaat ctaagtttaa atccagtcac        60
     gtcagatttc agaagatagt agtcacgtta gattgaaacc gaagtacgaa gttaaagcgc       120
     gaagttaaag tgcgaagttt aagtgcgaag ttaaagtgca aagtataaac ttcaaaaata       180
     cacttgcaaa atgtcgtggc ttttcgggga cacctacgtg caacaatcga tgaactcggt       240
     agagatcaaa gttatcgctg gtgtagcggt aggtttattg gcattagccg tagtatacgg       300
     agctttgcgt ctccacggca aatttatgaa agccaagata gagcgaacaa ctcgcaaaga       360
     agtaagattg aacaattcgg tggtagtgta aaccaaaagt gatggaggtg gtttaagaaa       420
     aacaattccg tgaacattga acattccagc ttaagctgaa cagtgataaa aaagggtaaa       480
     atacccaaaa ttaaaaatat taatcgagca gcagtaccaa tccatgaata gcagcggagg       540
     cggaatgcag tgtgcagcac cagaaatgaa cgacactgag tagcagcagc agcgacgaaa       600
     aggtaaataa aaggaaaatt aaacccagcg caaagcgcga tgagaccaag aagcgcatgg       660
     aaggagtgaa gaaaagtgaa actaaatatg attttattga tacatgagat atgaatgaac       720
     atgatttttt tttgtttctg aactaagtgt ggattttcat ttaatgtaca aaatcattat       780
     ttaaagtgtt taattcgttt tgcgaaaaat aggtcgatga atatgaacaa catgaataca       840
     tacaaataaa tggaacagat agaatttgaa ttctcaatac taaagaatat tagaaataat       900
     ttattaaaaa agccgaaaaa tagaatttac acaaggagca caattttgaa taaattaaaa       960
     gaaactaagg aagcacatga taatataagt gatatattaa caattttgga gacagatttg      1020
     gatatcgaaa cctttaataa aattaacaag aaagcaaagg aaatttctag cgcaatttat      1080
     ttgcagttgc atcagatgtt agtaacttcc acaacatcta gcaaatttaa aacttatgcc      1140
     attcttgtat taagtgtagt gagattcagg aaaactttta cgatggccaa tgttgaaata      1200
     atcaaaacgg tgagtacatt gatgccttct tatgatggat caatggacaa actagatagt      1260
     acaattgatg ctttagaagt catagaaact ttggtaaccg atgcaaaccg agctaccatt      1320
     ataaacgtta ttttaaccaa attaagtggc agagcacgac acacatttgt tgtgaagcca      1380
     gcagatttac aagagttaaa aaccaaactt aaagcagtgg taacggttac accacccgaa      1440
     acaataattt caaaaatgat cgcgactaaa caaaaaactg atttagcaac attcacaacg      1500
     gaaattgaat cacttgcgac tcaacttgaa aacgcctata tttcaaaaaa gattccaaat      1560
     gacgtagcaa aagagttatc tacaaaagaa gctatcaaac acatggcttc tggcctgaaa      1620
     aatgaaaaga cggctctcat tttacaagct ggaacattca accagctggc cgaagcaata      1680
     aacaaaatac acgaagtgaa ccccacatgc gaagccaatg taatgtttgc aagagcaaac      1740
     cgaaatgcaa acaaaccgag tcagtctaat gagacttgga tgagcagaaa tgcaccatac      1800
     aaccaaaatc gttttggcaa caggtactca aaccaacgtt tcaatccaaa tagccaaggt      1860
     aggtcaagtt cgcgacatca gcagtatggt catagatatg aaggtcgaaa tgatgatcga      1920
     cagagttttt ctagaaggca gaattttaac catactcagc aaggtcacta cagccaccaa      1980
     ccaaatggtc actggcgtag taacaacaat aataacaatc ataactgcaa cactgatcgc      2040
     aacgatcgta atgtttactc tacggaaaac gggcgcgggc cagctgcaac tccccaggcc      2100
     agctgtgccg tgccaatgaa ccaacaaggg gaaacccgac accaagcaac aaatccaata      2160
     cagcaagtgc aacgcacaaa caaccaaggc gtgaatgtat ataattgcaa tattaactat      2220
     tcaaattttg taacactaaa attagaaatg tgtgaaaaac ctgtcacatt aattgttgac      2280
     accggagctg atgtttcatt aattaaggag aacgtattga aacatcttac caatatatat      2340
     ataaaacaga attgtattat taatggagtg acggatggaa aacttgagac catcggatgt      2400
     acatatacga atattctttt aaacaacgtt caaataccac atacatttca agcggtcact      2460
     aaagactttc ctatttttac tgatggaatt cttggccgtg attttctaat taattatgaa      2520
     tgtaatatat gtctcaaaac atggctttta acatttgaat ataatcatga aaaattcgag      2580
     ataccaattc aagataaata caacgaccat ttcattatac cccctcgatg tcaaattatt      2640
     aaacaaataa acttaataaa tgtcaccaaa gaaagtgtcg tactttcaaa gcaaattaaa      2700
     ccaggagtat tttactctaa cggattaata gataaagata ctcaatatat aaacataatg      2760
     aacgtcaata attgttctga aaaaatttca atgaatgatg tattatcaaa tatcaaaatt      2820
     ttagattcga gtgaattcga aaaagttaat aataaaatca cccgaaaaag taataaaaac      2880
     agagtcgtta aattgaaaga agaattgaat ctaacacaag tatcagatga tattaaacca      2940
     caattagtga aactgtgcac aacttataac gatatttttg ctctagagaa tgattctcta      3000
     agtacgaata atttttacaa acaaaaaata actatggaag atgaaagccc tgtttacata      3060
     aaaaattatc gcataccaga ggctcataaa attgaagttg acaaacagat tgataaaatg      3120
     cttaatgaaa aaattataca accttcggta tctccataca attcaccaat tctgttggta      3180
     ccgaaaaaat ctaactctga cgaaaagaaa tggaggttgg tgatagattt tcgccaacta      3240
     aacaagaaaa taattgcgga taaatttcca cttccgcgta tcgatgaaat tcttgacaat      3300
     ttgggcagag cgaaatattt tacaacgctt gaccttatgt caggatttca tcaaattgag      3360
     ctagatgaaa attcaaaaaa atataccgca ttttctagtt cttcaggaca ttacgaattt      3420
     aatcgtttac cttttgggtt gaatatatca cccaatagct tccaacgaat gatgacaatc      3480
     gctctgagtg gtttaccacc agagtgtgcg tttctatata tcgatgatat tattgtggtg      3540
     ggatgttcaa taaatcatca tttgaaaaat ttaactatgg tttttgaaaa acttagacag      3600
     tataatttga aattaaaccc atcgaaatgt cattttttta gtagtgatgt cacttattta      3660
     ggacatcata ttacggataa aggtatttca cctgaccctt caaaatattt tactattgaa      3720
     aaatatccaa caccgtcaaa tactgatgat gtaagacgtt tcgtagcgtt ttgcaattat      3780
     tatagacgat ttattcaaaa ctttgctgaa atagcacatc ctttaaacaa attattaaga      3840
     aaaaatgtaa aatttaactg gtcaactgaa tgtaaaacag catttgaaac acttaaatcc      3900
     caactcttat caccacaaat tttacagttt ccaaatttca agaaacaatt tatcttaata      3960
     actgatgcct ctaaagcggc atgcggtgca atactagcac aaaagtatga cgatgtcgat      4020
     ttacctattg catacgccag caaagcgttt acaaaaggtg aatctaacaa gtctactatt      4080
     gagcaggaat taactgcaat ccattgggca attacgcatt ttagaccata tttatatgga      4140
     agaaaatttc tcgttaaaac ggatcacaga ccgttagtgt atctgttttc tatgaggaat      4200
     ccatcttcaa aattaaccag gatgcgttta gaactcgaag aatatgattt cgaagttcag      4260
     tatgtacaag gcaaaaccaa cgtaggtgcc gacgcgttat ctagaatcaa tatagattct      4320
     gaaacattaa aaaatttaca aattttaaga gtcgaaacga gagcacagaa aaaacaaaag      4380
     gttcaacaat taagtaatga acaacaaaca aatgtgattc tagatgatga gcctgatcaa      4440
     ctcaaaattt ttgaatcact taacatcaac gagatatacg aattacccaa acttaccatc      4500
     gaaaagacgt ctaatattaa aaaccatggt ataatgtgca aaattatgaa caaaaaattc      4560
     aataaggagt cggctcgagc gccatttatt cctctgaaaa tcaacaaaat gaaggaaacc      4620
     ctaggtaaac tcttaacgaa aattgatgaa aaagcgcaca agttaaaaat tacacggata      4680
     gctctagcgt tatccagtac aatttttaaa atgatgagta taaacgaatt taaaaaagca      4740
     tgcaaccaac atcttcgttt tatacaaatt ttactatatg aaccccagca agaggttgac      4800
     aacaaaaatg aaatcgcgaa aattatacaa gaaaatcatg attccgcaat tggtggacat      4860
     actggtataa acagactata caaaaaactg aaaaattttt atatttggcc caacatgaaa      4920
     aatacaatta aaaattacgt taataattgc attaaatgta aacaaaataa acattcttcc      4980
     aaaacttatg aaaaatttga aattactcca actccccaga aaccgttttc aataatagct      5040
     atggacacta tcggtccatt tactaaatca aactcaggta atagatacgc attaactatt      5100
     caatgcgact tttcaaagta tattatcgtc aaaccgattc cagataaaca ggctgaaaca      5160
     ttagctaaag catttattga aaactgcatt ttaatttatg gttctccatc cattatacga      5220
     acggatcaag gaactgagta taaaaacgaa gttttcaata atatcaatca aatgttacaa      5280
     attacacata atttttcaac tccgtatcat ccagaaacaa ttggtagtct agagagaaat      5340
     catcgttgtc taaatgagtt tgtaagacaa tttgtcaatg agtcacataa tgattgggat      5400
     gattggttgt cttattatgc attttgttac aacacgactc ctcactctga ttttccatat      5460
     acaccatttg aacttatatt tggaagaaca gcaacgctac caaataatct aaaaaatcct      5520
     aaagaaattg aaccaatata taattatgaa caatactact cagaactgaa attcaaaatg      5580
     aaaactgcag cacagagaac acaagaatta attaacaaag caaaacttaa aagacaacaa      5640
     aaccaagaaa atattgcaaa accatcgtca atcaaaaaag gagattatgt tatgatagaa      5700
     aatgagaata ggtcaaaact cgataaaatt tataaaggtc catataaagt aacagagata      5760
     aatcatccaa atgtaacgat atttgacgat aacaaaaatc aatattacac aatccacaaa      5820
     aataaattag ttaaattcaa ataaaacaga aaacaatttt tttccttaag taagcataga      5880
     atagtatatt ttcaactact aaactcaatt ttaaatcaac atttatagtt attaaataca      5940
     taccaatcaa ttactatatt cattataaaa cttttataaa tgcaaagatt tttggagctt      6000
     gaattttaaa aaaaactaaa atgatctcgc gatactcaat catttttctc ttagggggaa      6060
     gg                                                                     6062
//
ID   Gypsy-614_AA-LTR repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-614_AA_;
KW   Ty3_gypsy_Ele126; Gypsy-614_AA-I; Gypsy-614_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-536
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 536 BP; 173 A; 131 C; 76 G; 156 T; 0 other;
     tgtggcatct ctgcatcttc attcacccat tctgctatca atatatcaac acatgaatcc        60
     tccagggcaa gcactctttg ctttgccaag aatacgaaac ctactttcta gcaaaacaat       120
     aaattacaga acacacttga cattcttctg cttcgaccca catctggtaa aagtagaaca       180
     atgctgaatg tgtcttttca cccttactca atttacaaac attaccatta cgtctatgtc       240
     tcttccgcac catgtgcgta acagacgacg caacgtttaa tgtttatgac caattgaaat       300
     ccgaagcggc gagttgttaa aacatcgcct agtacatgtt ttcaaaacct tttccttcgt       360
     tccatgtaag ctccaaactt ctctgacaaa ttctagatat aagcaaactt ctatgtatag       420
     gtgaagcaaa ctaaactatg taactttata aaaaccattt gaaatgaaat atacgagaga       480
     ttcttacatc agacaccgtt gagactagtg ccttctccga aagtacacac gccaca           536
//
ID   Gypsy-615_AA-I repbase;    DNA;    INV; 4384 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-615_AA_;
KW   Gypsy-615_AA-LTR; Ty3_gypsy_Ele18; Gypsy-615_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4384
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3311-3790] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..4327
FT                 /product="Gypsy-615_AA-I_1p"
FT                 /translation="MPVTRSQAAKKGHEAQIEEEEPTFFDVKTMADDDKSV
FT                 SGVKREENVCVQPVSQTHTFAPHPHDLGRLIPEFSEGDGVTKWLRRIDHFR
FT                 ILYGWTEQMCLLYGSTRLNGAAASWYRRYEEKIFSWAQFKQHLTVAFPETF
FT                 DEADIHRQLEEMKKEKDESYESFVYRVDALAQQGDFSTSATLKYIIKGLRN
FT                 DQVYPSLLARQYTSTLDLLHHIKWISSNLCMISSRANAVPMRISKVPTMTG
FT                 SGASSSGSETICFNCREAGHRSIDCPKPQRRERCTKCMKVGHTAEKCMVMT
FT                 NSTKHQGANQIASGTSGRNVVNALFGGDEDTLELNESSLVEVDVDAAGERF
FT                 RTMALVDTGSYVNLIKRKLLSSSITLGGNVQEVVGINDAKVTVLGEFSTSL
FT                 RIRNRDMTARCLVVLDDTMQVDMILGRSFLRENRIHYLHISEGGAYEAQKM
FT                 GSKQDWSMFESFDESYLIDSQSNLKLDVGDSNETRCQSGRLEKILQDSYFN
FT                 RPRPDKPLIRYQADIRLKDDKIFTATPQRLSVWEKGELDKMVADLLQQGII
FT                 RESESAYTSRVVLTRKKNNSLRMCVNYRPLNRLVERNHFPMPIIEDQIMRL
FT                 QGKRYFTSLDLKNGFYHVELTEDSKKYTSFVTDSGQYEFNRLPFGYANSPA
FT                 VFVKFITKVLDPFIRDGKVVVFIDDMLIASENIDEHFQTLQDVLETLSDNH
FT                 LELQLSKCQFIKTRVEHLGYDVQFNRIQPSDKHIQSIRDFPVPTSRKSLQR
FT                 FLGLVNYFRKFIKGFNVQAGMLYELLKEDRDFLMTAEHVQAAENLKDALIS
FT                 KPVLRIYSPTAETELHTDACSSGFGGVLLQRQSDDGLMHPVMYHSRKTSPT
FT                 ESKLHSFELETLAIVYCLQRFRTYLFGLRFKIVTDCNSLKHTLEKRDINSK
FT                 IARWSMFLEQFDFEIVHRSGARMQHADALSRVNVYMVDEDERLNESSLFEN
FT                 ALYVAQLRDPEIAKLKDAVLSGSTKDYEIREAILYKLVGRNSLLCVPGQMI
FT                 QSVINKFHNEMGHFGVDKVCGLIRRTYWFPRMREQVQDHIKSCVTCIAYNP
FT                 RNKRYDGDLQIVDKPDKPFEVLHIDHLGPLEKSKGKNEYILAVVDACTKFV
FT                 KLYPTKTTKTTEVMKSLRNYFHAYSAPKAIISDRGTAFTSHAFENFTQSHG
FT                 IKHIKIASACPKANGQVERYNKTMMPLISKLVEETGRNWDTILTDAEFLLN
FT                 NTVNRSTGTTASILLFGIEQRRRVDHDLTHYLNEINGAEDRDLDELRETSK
FT                 KNTKRQQQYNKKVYDKHCSRNTYYKSGDLVMLRRVGVAGERNKLKPKYRGP
FT                 YEVKKVLDNNRYVVGDLDEFQVSGMRFEGIYDPMNMRLYQRATKDELREHK
FT                 SNGVEGANGENENEEVEYQDIEYLEDDQESEIEFEYVEYLEEDCDF"
XX
SQ   Sequence 4384 BP; 1345 A; 845 C; 1097 G; 1097 T; 0 other;
     gttatcagaa gtgggatagc accggcagtc aaaagttaat ttcggtgacg gtgactccaa        60
     cgttccagga gcacgacgat attccggaat tttcaacgcg atgccggtga ccagaagcca       120
     ggcggccaag aaggggcacg aagcgcaaat tgaagaagaa gaaccgacct ttttcgacgt       180
     gaaaacaatg gcggacgacg ataaatcggt gagcggagtt aagcgagagg agaatgtgtg       240
     tgtgcaacca gtatctcaaa cccatacttt tgcaccgcat ccacacgatc ttggaaggct       300
     gattccagag ttttcggaag gagacggcgt taccaaatgg ctgcggcgaa ttgaccattt       360
     tcgcatcttg tacggttgga cggagcagat gtgtctacta tatggatcca ctcggctcaa       420
     tggggcagcc gccagttggt accgacggta cgaagaaaaa atattcagtt gggcgcagtt       480
     taagcagcat ttgacggtgg cgtttccgga aactttcgat gaggcggaca ttcatcgaca       540
     actcgaagag atgaagaagg agaaggacga atcgtatgaa tcattcgtct atcgcgttga       600
     tgctctagcg caacaaggag attttagtac ctcggctacc ctcaagtata ttatcaaggg       660
     actacggaac gatcaagtgt acccgagcct gctagcaagg caatacactt cgacactgga       720
     cttgctgcat cacatcaaat ggatatcatc gaatctgtgc atgatttcga gccgtgccaa       780
     tgcggttccg atgcgcattt ccaaggtacc gacgatgacg ggatcgggag cgagctcatc       840
     cggaagtgaa accatctgct tcaattgtcg tgaggcagga cacagatcaa ttgactgtcc       900
     aaaaccacag cgcagggagc gatgcaccaa gtgtatgaag gtgggacaca cagcggaaaa       960
     gtgcatggtg atgacgaact caacgaagca tcaaggagca aatcagatcg catctggaac      1020
     atcgggacgg aacgtggtaa acgcgctttt tggcggagat gaagatacac tcgagttgaa      1080
     tgagtcttcg ttggtggaag tggacgttga tgcagccggc gaacgtttcc gaaccatggc      1140
     gctggttgac acaggtagct atgtgaacct tataaaacgt aagcttttgt catcgagtat      1200
     tactcttgga ggaaatgttc aggaagttgt agggattaat gatgccaaag taactgtttt      1260
     gggagagttc agtacaagct tgcgtataag aaatagagat atgactgcga gatgtttagt      1320
     agttcttgat gatacgatgc aggtagacat gattttaggt agaagttttt tgagagaaaa      1380
     tcgcatacat tatctgcata tctctgaggg tggtgcctac gaggcgcaga aaatgggcag      1440
     taaacaagat tggtcaatgt tcgaaagctt cgatgaatcg tacctaatag acagtcaaag      1500
     taatttgaaa ctggatgtgg gagacagcaa tgagactcgg tgtcagtctg ggaggctgga      1560
     gaagattttg caagatagtt atttcaacag acctcgtcct gataaacctt tgattcgata      1620
     ccaggcagac attcggttga aggatgataa gatatttacc gctactccac aacggctcag      1680
     tgtgtgggag aagggtgaac tggataagat ggttgccgat ttgttacaac aagggataat      1740
     tcgcgaaagt gaatcagctt atacttcccg cgttgttctg accaggaaga aaaataattc      1800
     tttgagaatg tgcgtgaatt atcggccact caatcgactc gtggagcgga atcattttcc      1860
     gatgccgatt atcgaggacc aaataatgcg cttacaagga aagcgatact ttacatcttt      1920
     agatttaaag aacgggttct accacgttga attgacagaa gatagtaaaa aatacacttc      1980
     gttcgtgact gatagtggcc agtacgaatt taatcgccta ccgtttggat atgcaaactc      2040
     tccagcggtg ttcgtgaagt tcattacaaa agttttggac ccttttatcc gcgatggaaa      2100
     agtggttgtg ttcatcgatg atatgctgat agcttcggaa aatattgatg aacatttcca      2160
     aaccctacaa gacgttttgg aaacgctttc tgataaccat ttggagttac agctttcgaa      2220
     atgtcagttt attaaaacaa gagttgaaca cttaggatat gacgtccagt tcaacagaat      2280
     tcaaccaagt gacaaacaca tccagtccat acgtgacttc cctgtcccta ccagtcgcaa      2340
     aagccttcag cgttttctag gcctggtgaa ttattttaga aagttcatta aaggcttcaa      2400
     tgtccaggcg ggcatgttgt atgaactact caaggaggat agagatttcc ttatgactgc      2460
     tgaacatgtt caagccgccg aaaacttgaa agacgcgcta atatcgaagc cagttttacg      2520
     aatttattca cccactgcgg aaacagaact tcacaccgat gcatgttcat ctgggtttgg      2580
     aggtgtccta ctacagcggc aatcggacga cggtctgatg catccggtga tgtaccacag      2640
     tagaaaaact tccccaacgg agtcgaagct gcacagcttt gaattggaga cgcttgctat      2700
     tgtgtattgt ctgcaacgtt ttcgaactta tcttttcggg ttgcggttca agatagttac      2760
     agattgtaat tcgttgaaac acaccttgga gaaacgcgac attaattcaa aaattgcacg      2820
     ctggtcaatg ttcttagaac aatttgactt cgagatagtt caccgatctg gagctaggat      2880
     gcaacatgca gacgccctct cgcgtgttaa cgtttatatg gttgacgagg atgagcgact      2940
     aaatgaatcg tcactttttg agaacgcact atatgtggct cagctgcgtg atccggagat      3000
     agctaaactg aaagatgctg tactgtccgg ttctacgaaa gattatgaaa tccgcgaagc      3060
     aatcttgtac aagttggtag ggcggaattc attgttgtgt gtgccgggtc aaatgatcca      3120
     gtctgtgatt aataagttcc ataatgagat gggacatttc ggagtcgaca aagtgtgtgg      3180
     attgataagg aggacgtact ggtttccgag aatgcgagaa caggtgcaag atcatattaa      3240
     gtcgtgtgtt acgtgtatag cttacaatcc acggaacaaa cgatatgacg gggacctcca      3300
     aatcgtcgac aaaccagaca aaccatttga agttctccac atagaccatc taggcccgct      3360
     tgaaaaaagc aaaggcaaaa atgagtatat actggcagtc gtagatgcat gtacgaaatt      3420
     tgttaaactg tatccgacta aaaccacgaa gacaacggaa gtaatgaaaa gcttacgtaa      3480
     ctatttccac gcttattcgg ctccaaaggc aattatttcc gatcgtggaa ctgcatttac      3540
     ttctcacgct tttgagaact ttactcagag ccacggtata aaacacatta agatcgcctc      3600
     tgcgtgtcca aaagccaatg gacaggtgga acggtataat aaaactatga tgcctctgat      3660
     aagtaagtta gtagaagaaa caggacgaaa ttgggacaca atcctaacag atgcagagtt      3720
     tcttctcaac aacactgtaa accgttcaac tggaactaca gcttctattt tactctttgg      3780
     gatagagcag cgacgccgtg tagatcacga tctgacgcat tatttgaatg aaatcaatgg      3840
     agccgaagat cgagatctgg atgaactacg tgaaacttcc aagaagaata ctaaacggca      3900
     gcagcagtat aacaagaaag tatacgataa acactgctct agaaatacgt attacaagag      3960
     tggcgatttg gtgatgctca gaagagtcgg agtagcaggt gaaagaaaca agcttaagcc      4020
     gaaatatcgg ggaccttatg aggtgaaaaa agttttggac aacaaccggt acgtagtggg      4080
     tgacctggat gagttccaag tgtcaggtat gcgatttgag ggaatatatg atccaatgaa      4140
     catgcgtctc taccagagag ccacgaagga cgaattaagg gaacataaaa gcaacggagt      4200
     agaaggtgct aacggggaga atgaaaatga agaagtcgag tatcaggata tagagtattt      4260
     agaagatgat caggaatcag aaatagaatt cgaatacgtt gaatatttgg aagaagattg      4320
     tgacttttga tttgattttc cagatgagta attgctacca aattaaagtg caggatggcc      4380
     gagc                                                                   4384
//
ID   Gypsy-615_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-615_AA_;
KW   Ty3_gypsy_Ele18; Gypsy-615_AA-I; Gypsy-615_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 201 BP; 63 A; 38 C; 39 G; 61 T; 0 other;
     tgtaagcttt cagagaaaaa taaattatga tacaccctat cgaatatgga ccaccctata        60
     gtttatagct agttatgtag aattactctg gagtgtgtac cgataggcag ttagaagtga       120
     actctgatcg agaaaacatc aataaacgat ctcttgtgaa gacggtgcgt ttcattccac       180
     ttttccggat ttctgcctac a                                                 201
//
ID   Gypsy-616_AA-I repbase;    DNA;    INV; 5033 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-616_AA_;
KW   Gypsy-616_AA-LTR; Ty3_gypsy_Ele25; Gypsy-616_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5033
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4084-4560] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3274..4608
FT                 /product="Gypsy-616_AA-I_3p"
FT                 /translation="MEKLKLALCDRPTLRLYCPNAVTELHTDASRIGYGAI
FT                 LLQKFAGENAFHPVYFYSRKTSPAEANYPSYELEVLAVISALKKFRVYLLG
FT                 ISFTIVTDCAAFKMTMEKKDISPRIAGWALLLEEYEYTLEHRPGSRMKHVD
FT                 ALSRNPVVLLLQSNIIEQIKACQQKDERLSAIMKVLKTEPFYDYLVDHGIL
FT                 YKYFNGGKLLVIPSSMQHSVIRNIHEQGHFGVKKMSELLTREYWIENLPFK
FT                 LDKFVKSCVSCILAGRKVGKKEGYLYPIPKDEVPLSTYHIDHLGPLTASKK
FT                 HYRYIFTVIDAFSKFVWIYPVKSTTADEVLKKLEIQRCVFGNPKRIISDRG
FT                 AAFTSTAFQDYCETEGIEHLQITTGVPRGNGQVERIHGVIVPALAKLSVEN
FT                 PENWYRYVGNLQRFLNNTLQRSIARTPFELLFGTKMKAPEDIKLAEIIEQE
FT                 "
FT   CDS           join(628..1500,1504..3246)
FT                 /product="Gypsy-616_AA-I_1p"
FT                 /translation="MKLNMMENTFTRLIDQLNFSNTTVTNLTQELSALRTE
FT                 MNYMRAETTRLNSAVEEIRSGSMVPQQASTPNGDSSVGYDENRHIRSHANC
FT                 AANNQVVINARVNAENDELNDGDGRADGSVLGRNIYPGVANGVANNDLLGN
FT                 GPNNNSVTPENVQNQLDNRNRECENDNVGIGEGRHAIERVSGSCNGSVAYG
FT                 GLRGDYHMEAHAHDMAREIEPRLSVSEAETAFSEFSGTEFYPVQKWIADFE
FT                 ELSDSIGLTELRKFVIAKRKLTGLAKMSLNTTNNVSNWRTLKDFLMKEFES
FT                 ENCAVVHERLRNRKRNLGENVLEYFLQMREIGAKANVDISSIITYTINGIN
FT                 DNGPDKTILYGSKTLDEFREKLRVYQSIKDSKYGRDGNFSGKPNGYNRNFT
FT                 NRFKSPPRSISCYNCGRDGHISRECPKKFGNKNANICRSNTAVSKGTYLTI
FT                 MVGTIPFHAFFDSGSDVSLLKEDWKNKLNLKMDHNDRKRLLTLKGGIWTLG
FT                 SVSLDIEVENSPLRITFDILRDEDLPHDILLGRNLLEFGDVSVTADGAKFS
FT                 PKEEHFALRIRTDDVSDDCLEHIEDNFVRDKVKEIIENYSPQQVETTRVKL
FT                 KIVVKNESPIQQLPRRLAPLEKKIVQEQIDKWQEDGIIRPSTSEYSSPIVL
FT                 AHKKDGTRRLCVDYRKLNKIIVRDHFPIPLIEDIIDDLHSARVFSTLDLEN
FT                 GFFHVPVEEDSIKYTSFVTPAGQFEFLRTPFGLCTSPTVFQRFVNDIFRDL
FT                 IDKKIVVIYIDDILIPAENEEEALERLAMVLKVAQDHGLKVKWKKCQFLMR
FT                 RIQHLGYEIEDGNIRPMSEKTDAVSKFPEPKNHKEIQQFLGLTGYFRKFIE
FT                 GYSVIAKPLTDLLRKDVIF"
XX
SQ   Sequence 5033 BP; 1708 A; 784 C; 1127 G; 1400 T; 14 other;
     aatttggggg ctcgtccggg aacgcgggaa gaaactgtcg cgatagtcgt taatgtgcgc        60
     cggtgggcgg gaagtttaga agaattatcg tgaaatcgtg ccttgaaatt gcattgcaaa       120
     gaaatattaa ctttaagtga agtgaattga attgaactta attttgaatt gaaaaaatta       180
     gtgttaagat attaaattga attaattagt gataagtgaa tttggattat ttttttcata       240
     atatagtggc agtgtaaaat atttcgccag acaagaatat aacaaaagtg ttctttgaat       300
     ttaatttttc catcgtaaaa aaaaaccctt attgtgaact ccattacaag aagcagaatc       360
     cactgatctg caaagttgac ctggggttaa gggtcattgt acggtgcaaa aaaaaataaa       420
     caacaactcg gaagcgtgtg tttcagtgcc gataaacgga gaaaaaaaaa aagtgtatct       480
     ctttcttcct tgtgactatt tcgttcggaa gtgatagtga cgatgcagga cagcagcatt       540
     ccgccttttc ggcctagcag cggcgsgtca ccccctgctt ccaatgcgcc taatccccaa       600
     gtgcaatttt ccgctgcttc atgtgaaatg aaattaaata tgatggaaaa cacttttacg       660
     cgcttaatag atcaacttaa tttttctaat acgactgtga cgaacctgac acaagaactt       720
     agtgcgttgc gcactgaaat gaactatatg agggcagaaa caacccgttt aaattcggct       780
     gttgaagaaa ttcgctctgg ctcaatggtg ccccaacagg caagcactcc taatggagat       840
     agttcggttg ggtatgatga aaataggcat attagaagcc atgcgaactg tgcggcaaat       900
     aaccaagtag tgataaacgc tagagtgaat gctgagaatg acgaattgaa tgacggcgat       960
     ggtcgtgctg atggtagtgt tttgggaaga aatatttatc caggtgttgc gaatggcgtg      1020
     gcaaataatg atttgttggg caatggtcca aacaataatt cggttactcc agaaaatgtt      1080
     caaaatcagc tagataaccg caatcgcgag tgtgaaaatg acaacgttgg gatcggtgaa      1140
     ggccgacacg ctatagagag agtgagtggg agctgcaatg gctctgtggc gtacggtggc      1200
     ttgcgtggtg attaccacat ggaggcccat gcgcatgaca tggctagaga aattgaaccc      1260
     cgattatcgg taagtgaagc tgagactgcc ttttcagaat tttcgggtac tgaattttat      1320
     cctgtacaaa aatggattgc tgattttgag gaattgtctg attctattgg cctgacagag      1380
     ctacgtaagt ttgtgattgc aaagcgtaaa ctaacaggtt tagctaaaat gtcattgaac      1440
     actactaaca atgtmtctaa ttggagaacg ttgaaggact ttttgatgaa agaatttgag      1500
     twttcagaaa attgcgctgt ggtgcacgaa agattgcgaa atcgcaaaag aaatttaggt      1560
     gaaaatgtct tagagtactt tttgcaaatg cgggaaattg gggcgaaggc caatgtggac      1620
     atttcgtcga ttattaccta caccattaac ggaataaacg acaatggacc agacaaaact      1680
     attttgtatg gatcgaagac cttggatgag tttagagaaa aacttcgtgt gtatcaaagt      1740
     ataaaagaca gtaaatatgg cagggacgga aactttagcg gaaagcccaa tggctataat      1800
     agaaatttca caaatagatt caaaagtcca ccaagatcaa taagctgtta taattgtgga      1860
     agagatggtc atatctctag agaatgcccg aagaagtttg gaaataaaaa cgctaatatc      1920
     tgtagatcta acactgctgt atcaaagggt acttatttga caataatggt tgggacaatt      1980
     ccctttcatg ctttttttga ttctggttcc gacgtctctt tattaaagga agactggaaa      2040
     aataagttga atttgaagat ggatcacaac gatcgtaagc gtttattgac gctcaaagga      2100
     ggaatatgga cgttaggcag cgtttcacta gatatagagg tagaaaactc acctttaaga      2160
     attacatttg acattttaag agatgaagat ttgccacatg atatattgtt gggtagaaat      2220
     ttattggaat tcggtgatgt cagtgtcacg gctgatgggg caaagttcag cccgaaggag      2280
     gagcattttg cgttgagaat aagaacggac gatgtttccg atgattgttt agaacatatt      2340
     gaagataatt ttgtgcgtga taaagttaaa gaaattatag aaaactattc tccgcaacaa      2400
     gtagaaacaa ctagagttaa actgaaaata gtagtcaaaa atgaatcacc cattcagcaa      2460
     ttgccacgac ggttagctcc gctagagaag aaaatagtgc aagaacaaat agataaatgg      2520
     caagaagatg gaatcatccg tccgagtact tctgaataca gtagccctat tgtattagct      2580
     cataaaaagg atggaacaag aagactatgt gttgattatc gtaaattaaa caaaattatt      2640
     gtgcgggatc attttccgat tcctttaatt gaggacataa tcgatgattt acattcagca      2700
     cgtgtatttt caacattaga tttagaaaat gggttttttc atgtaccggt tgaagaagat      2760
     agcataaaat atacgtcatt tgttactcct gcaggacagt ttgagttttt aagaacacct      2820
     tttggattat gtacctcgcc aacagttttt caacgatttg taaatgatat ttttcgagac      2880
     ctaatcgata agaagattgt tgtaatttac attgatgata tattgatacc cgctgaaaat      2940
     gaagaagagg cattggagag attagcgatg gtgttaaaag tagcacaaga tcatggatta      3000
     aaagtcaaat ggaaaaaatg tcagtttttg atgcgaagaa tacagcactt gggatatgaa      3060
     atagaagatg gaaacattcg tccaatgagt gaaaagactg atgcagtatc gaaattccct      3120
     gaacctaaaa accataaaga aatacaacaa tttttgggat tgacaggata ttttagaaaa      3180
     tttattgaag gctattcggt aattgctaag ccattgactg atttgttgcg taaagacgtt      3240
     atatttwgct ttggaccaga acaacgtaat gctatggaga aattgaaact ggcgttgtgc      3300
     gatagaccaa cactaaggct gtactgcccg aatgctgtta ctgagcttca tacggatgca      3360
     agtagaattg gatatggagc aattttgttg cagaaatttg ccggagaaaa tgcatttcac      3420
     ccagtttatt tttacagcag aaaaacatca cctgctgagg csaactatcc gagttacgaa      3480
     ttagaagttt tagcagtgat ttcagccttg aaaaagttta gagtttattt gctaggaatc      3540
     tcgtttacta ttgtaacaga ctgtgcggct ttcaagatga cgatggagaa gaaagatata      3600
     tccccaagaa ttgctgggtg ggcattgcta ctcgaagaat acgaatacac attagaacat      3660
     cgcccwggtt ctcgcatgaa acacgtagat gcacttagta gaaatcctgt agtattgcta      3720
     ttacaaagta atataataga acaaattaaa gcgtgtcagc agaaagatga gagactgtcg      3780
     gcaataatga aagttttaaa aacagaacca ttttacgact atttagtaga tcatggaata      3840
     ttatacaagt attttaatgg tggaaaactt ttagttattc ctagttcgat gcaacattca      3900
     gttataagaa atattcatga acaaggtcat tttggwgtga aaaaaatgag tgaactctta      3960
     acaagggagt actggatcga gaatttacca ttcaaactag ataaatttgt taaaagttgt      4020
     gtttcttgca tattggcwgg tcgcaaagtt ggaaaaaaag aaggatatct ttaccctatt      4080
     cctaaagatg aagtaccact atckacatat catatcgatc acttaggacc actgacagca      4140
     tcsaaaaagc attatagata tattttcact gtaatagatg ctttcagtaa atttgtttgg      4200
     atataccctg ttaaatctac aacagctgat gaagtattga aaaagttaga aattcaacga      4260
     tgtgtatttg gtaatccaaa gagaatcatt tccgatagag gagctgcttt tacgtcwact      4320
     gcttttcaag attattgtga aaccgaaggt attgaacatt tacaaattac aacwggggta      4380
     ccacgtggca acggccaagt tgagaggatt catggagtca ttgtacccgc tctagctaag      4440
     ctttcagttg aaaatccgga aaactggtat cgttatgttg gaaaccttca aagatttttg      4500
     aacaatactc tccaacgaag catagcwcga acccctttcg aattattgtt tggcactaaa      4560
     atgaaagctc cagaagacat aaaactagca gaaataattg agcaggaakg gataagaatt      4620
     ttcgaagaat ctagggatga aattaggaag atggcaaggg ccagtataga agattcgcag      4680
     agaaaaatga aaaaacaatt tgatcataat agaaaagatg cagaagatta tgaagttggt      4740
     gatttagttg cgataagtcg tactcaattt ggcactcatt tgaaaatcgc tcggaaattt      4800
     cttggaccat atcgcgtaat taagaagaaa agaaatgaca gatacgacgt tgaaaaggtc      4860
     gggaatgagg aaggaccaaa gcggacatca acatgtgcgg aattcatgaa gcggtttgta      4920
     ccaggcgaag atgaagacga agatatctac gactacgatg aagagcaaac cagaggggat      4980
     gctgccgatc agattacacc atccgggtcg gatggtggtc aggatggccg att             5033
//
ID   Gypsy-616_AA-LTR repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-616_AA_;
KW   Ty3_gypsy_Ele25; Gypsy-616_AA-I; Gypsy-616_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-259
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 259 BP; 74 A; 59 C; 52 G; 73 T; 1 other;
     tgtgggacta tcttgagcat ccccatatga tckaccagtt ccacacagca cccgaacatc        60
     accccgcgag gagaagcata cgaaaatagt gtcagtatct gaaagtgaga gccatcgttc       120
     ggtcacgttg ttagtgaata tacaatttga attcgatccc cgtatttgaa agtttttcga       180
     tatccgaagt tgtcgtccga aacgcgtatc ccttcttttc gcgctagaaa agtgaagcat       240
     ttaattaata tttgctaca                                                    259
//
ID   Gypsy-617_AA-I repbase;    DNA;    INV; 6938 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-617_AA_;
KW   Gypsy-617_AA-LTR; Ty3_gypsy_Ele49; Gypsy-617_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6938
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4327-4782] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           533..1693
FT                 /product="Gypsy-617_AA-I_2p"
FT                 /translation="MPKVKSALKKTRELFRPDIDSSSDSDSSVKSEEYSHV
FT                 PLKNLTIPIESLNMAEQNALEAMARQMEAMMQAINTLTTKQMQYETQIGAS
FT                 TSRASDTRETGNTFTLMGDPFRIPDPIKTLPTFNGNKKQLNWWLETAEKTL
FT                 KNYETLVSPEIFQIYLTAVSNKIEGHAKDVLCTNGNPTTFDEIKQILVAAL
FT                 GDKQDLSTYNCQLWHNKMDGSVSKHYQRTKQLVHNIKSLAKQNPKYNDHWE
FT                 AVNDFIDEYSLAAYVSGLQKPYFGYVQAAEPKNIESAYAFICKFTSNETDR
FT                 ETTLYHQNRKDNFTRSNDQDKQSKPGFKKPFDPQNRARNENKVQKPEPMEV
FT                 GSTRSRLTLNNVNNIETNSDNEEEEDEAFQDTNFCVLNESDSDT"
FT   CDS           2554..5067
FT                 /product="Gypsy-617_AA-I_1p"
FT                 /translation="MLENGIITHSDSPWNAPIWVVPKKPDASGKKKFRVVI
FT                 DYRKLNEVTVDDKFPIPQIEDILDNLGKSTYFTTLDLKSGFHQIEMDENSR
FT                 QKTAFSTDLGHYEFLRMPFGLKNAPATFQRAMNSILGELIGTVCYVYLDDV
FT                 IVFGRSLKEHITNLGKVLEKLENANLKIQLDKCEFLKKNCEFLGHVITPEG
FT                 VKPNPDKIKEIQTWELPTTEKQIKQFLGLVGYYRKFIRDYAKLTKPMTKYL
FT                 KKDVKVNTDDPDFKKSFEKCKTMLISDPILAYPDYSKPFVLTTDASNYALG
FT                 AVLSQINEGKDQPVAFASRTLNKREINYSTTEKEALAIIWAIEKFKPYLYG
FT                 QKFTLVTDHKPLVFIKNANKNGKLIRWRLELENYDYTVIYKTGKTNVVADA
FT                 LSRKVETNVNEISDPSDIETVHSASSSEEFFIHFTERPINNYRNQIIFRTT
FT                 SFNSILMFDIFPGYKRTTICDSNFTADKITDYLKRYRNGRQTAIHAPESLL
FT                 NMIQVSYRNHFSHAHLVITQNMVEDIISEERQDNIIRQEHDRAHRGIQEVE
FT                 QQIKRSYFFPEMVKKIRRFNNACQICSGHKYDRKPYNIKISPRPIEIAPFH
FT                 RIHIDIFGMDKINYLTIICAFSKHLQAIKIETRNTIDIQNALNQYFSNFAI
FT                 PRSIVCDHEAAFTSIQMADYLANLGTQMDFASSSESNGQIEKTHCTLIELY
FT                 NTNKHKFPNMSSEQIMGIIVALYNNTVHSATGFTPNEIIFNRTDAISPAEI
FT                 DNNANRIFRKVTENLQKAQQKMERYNDEKEDPPVIEEGQTIFVKRGTRKKL
FT                 DPRFNTTKCLENKEKTIKIPRNTKRNKNKIKRIRKP"
FT   CDS           5420..6937
FT                 /product="Gypsy-617_AA-I_3p"
FT                 /translation="MTITQFVLLVLCVISNVHPQSLNIRNLYNEPLLLLKF
FT                 KDCRIQKSFIKIVHPINLTSIETEVIRIVKLASQLDQSLQISQLTIQKSRM
FT                 LINNLRQLKPIHHRRVRRWDTIGKAWKWLAGTPDADDLRIINSTINQLITQ
FT                 SNNQVIINQMITKRISGMTSVVNELINKHNMENRIILKEYDALTLILYIDS
FT                 MNHIIEEIQDTVLRTKIMLPNNKLLTLKEITLVESLLVEQGINVRFPEEAL
FT                 EYATPKVAIREDCLLYILQIPKLYDQNAEVIEIIPLTTNNYIIPEAPKYVI
FT                 KMQNSWFLTHYPEKTIQKESDLSTMNDDCIHAILKGAVSHCKTIENHDITI
FT                 KQVSRNKILINNSKQSYIGSNCGPHNRSLTGNYLITFHNCTVVINNKVYAP
FT                 EEVIDNITYDFQGAFPNLKINWSFTEHYNISTLKNSTEFNREHMELMKLEQ
FT                 SQHKSWIITLAGGLSTTTLTIIGIFLYVCLRRRKLIIKIKNPGRINQKLED
FT                 DLSLPPRGVT"
XX
SQ   Sequence 6938 BP; 2655 A; 1441 C; 1142 G; 1700 T; 0 other;
     gccgtccgga gtcggctgag tgactatttg tgataacagt ggaaaattca cgaaccaaaa        60
     acgtgaataa agtgatcccg cggcgttcaa cgcgaattgg acaaggcatc agtgacaagt       120
     agacggtaca cgtcgtcacg cgactcgagg atccccctgc aaatagcatc tggacaacca       180
     gcaacgtcag ccagacctac gaggacacga ctacaaaaaa ccgtaagtaa tttttactcc       240
     attttcactc ccccaaaaat tacttgcgag gagatttgcg aactactaaa taggcgcata       300
     atctctacaa agaaatcgca ctatcagata gacgatttct ttgccgcaac ttgatttact       360
     accagatagg aatcaggcca agcctctcct tacccccttc ttagcgtact accagatagg       420
     cgcacactct ttacgacgtg tcgctctacc aaatagacga cccgttcgtt gcaactcaat       480
     tcactaccag atagaaatag agcgaagtct cccccccccc ctagttaatt taatgccaaa       540
     agttaaaagt gccttaaaaa aaactcgaga gctctttcgg cccgacatcg atagcagctc       600
     tgattcggat agtagtgtta aatcggagga atattcccac gtaccgttaa aaaacctgac       660
     tatcccaatc gaatccctta acatggcaga gcaaaacgca cttgaagcca tggctcgcca       720
     aatggaagct atgatgcaag ccataaatac cctaactaca aaacagatgc aatacgaaac       780
     tcaaatcggt gcatcaacca gccgggctag tgacacccgc gagaccggca acacatttac       840
     actgatgggt gatccattca ggatacccga tccaataaaa accttaccaa ctttcaacgg       900
     caataaaaaa cagttgaatt ggtggctgga aacggccgaa aaaacattga agaattatga       960
     aactctagta tcacccgaaa tattccaaat ttatttgact gcagttagca acaaaattga      1020
     gggtcacgcc aaggatgtat tatgcacgaa cggcaacccc acaacttttg atgaaattaa      1080
     acaaatttta gtagctgctc ttggtgacaa acaagacctg tccacataca attgtcaact      1140
     ctggcataat aaaatggacg gtagcgtgag caaacactac cagcgaacaa aacagctggt      1200
     ccataatata aaatcgttgg ctaagcagaa cccaaagtat aacgaccatt gggaagcggt      1260
     caatgatttc attgatgaat atagcctcgc agcgtatgtc agtgggctgc aaaaaccata      1320
     ctttggctac gtacaagctg ccgagccaaa gaatatcgaa agcgcttatg catttatttg      1380
     taagttcact tcgaacgaaa ccgatagaga gacgacgctt tatcatcaaa acaggaaaga      1440
     taattttacc agatctaacg atcaagacaa acaatccaaa ccaggattta aaaaaccttt      1500
     cgatcctcaa aacagggcaa ggaacgaaaa taaagttcaa aaacccgaac caatggaggt      1560
     cggctcgaca cgcagtcgtc taacgttaaa taatgtaaat aatatagaaa ccaattctga      1620
     caacgaagag gaagaggacg aagcttttca ggacacaaat ttttgcgttc tgaacgagtc      1680
     cgactcggac acatagaaca tgatttttta ccgtacatca aaatcaggac tccaaaaaaa      1740
     caaattttca aaattttaat agatacaggt gccaataaga accttctgag accaggcata      1800
     ttaaagaata catccaaaat agaaagcacc caatccaaaa acgtaagagg tacgtttaaa      1860
     atatccacta aaggaaaaat taaattactc ggtcccgact tcccagaatt aactttctac      1920
     gaacttgatt tccatccatc atttgacgga ctgattggct ctgaaaccct ttctaggtat      1980
     aaagccgaaa tcgactacga gaaaaaaact atcgttttta atagtaaaac gataccgttt      2040
     ttcaaacatt tcattaaaaa ggaaaaaaca ttcaatcaca ttgttactct caaaagtaat      2100
     aaagatggcg attggttggt aggtgaaccc accgaacttt ataaaaacat cttgatagaa      2160
     ccaggaatct ataaatcagt cgacaacaaa acatcgtttc ttgtacggac aaatagcaaa      2220
     gaacccccta aattaaaaaa aaatattatt catatcaaag tcaataattt cgaaacgcgg      2280
     aacttcttct cgaacgataa acatccccct atccaacatg tagagaaact agaaaattta      2340
     ataagaactg atcatttgtc cattctcgaa aagaagtctc tcattgaact aattaacaaa      2400
     cataagaatg tcatactgaa agaaaacgaa aagttgacat ctaccacgaa aattaaacat      2460
     aaaattcaaa catcccacga aaaaccaatt tatacaaaaa catacagata cccccatgcc      2520
     cacaagcaaa ccgtgaaaga tcaaatagag gatatgcttg aaaatggcat aatcacgcat      2580
     tcggattctc cctggaatgc accaatatgg gtagtaccaa aaaaacctga cgcctctgga      2640
     aaaaagaagt ttcgagtcgt tatcgactac cggaaactta acgaagtaac agttgatgac      2700
     aaatttccaa ttcctcaaat tgaagacatt ttagacaatt tgggaaaatc aacatatttt      2760
     acgactcttg atttgaaatc agggtttcac caaatagaaa tggatgaaaa ctcaaggcag      2820
     aaaacggctt tcagcaccga ccttggccat tatgagtttt taaggatgcc attcgggctt      2880
     aagaatgcgc cagctacttt tcaaagagcc atgaattcca tccttggaga actaattgga      2940
     acagtatgct atgtctatct agatgatgtg attgtgtttg gtagatcatt aaaggaacac      3000
     attacaaatt taggaaaagt actagaaaag ttagaaaacg ctaatctcaa aattcaactc      3060
     gataaatgcg agttcctaaa gaaaaattgt gaatttctag gacatgtaat cacaccagag      3120
     ggagttaagc ctaatcccga caaaattaaa gaaatccaaa cctgggagtt accaacaaca      3180
     gaaaaacaaa taaaacaatt tttgggacta gttggatact atcgaaaatt tattcgagat      3240
     tacgccaagc taactaaacc tatgacaaaa tacttgaaga aggatgttaa agtaaatact      3300
     gacgatccag atttcaaaaa atctttcgaa aagtgcaaaa ccatgcttat ttcagaccct      3360
     attttagcct acccagatta ttcgaaacca ttcgtactga ccacggatgc gtctaattat      3420
     gcactagggg cagtattatc ccaaattaac gaaggtaaag accaacccgt agcattcgca      3480
     tcaagaaccc tcaataaacg tgaaataaat tactcaacta cagaaaaaga agctttggca      3540
     attatttggg caatcgaaaa atttaaacca tacctctacg gtcagaaatt tactctagtt      3600
     actgatcata aaccattagt tttcatcaag aatgcaaata aaaacggaaa acttataaga      3660
     tggcgattag aactcgaaaa ttatgattat acagtaattt acaagacggg caaaacaaat      3720
     gtagtggctg atgcgcttag caggaaagtc gaaactaatg taaatgaaat atctgatcct      3780
     tcagacatcg aaacagttca ttctgcatca agttcagaag aattttttat tcatttcacg      3840
     gaaaggccca ttaataatta ccgaaaccaa ataattttta gaacaacttc atttaactcc      3900
     atacttatgt tcgacatctt ccctgggtat aaaagaacaa caatttgtga cagtaatttc      3960
     acagcagata aaattactga ttatcttaaa agatatcgga atggtagaca gacggctatt      4020
     cacgcgccag aaagtttact gaacatgatc caagtgtcct atagaaacca cttctcgcat      4080
     gcacaccttg ttattaccca aaacatggta gaagatataa tcagcgaaga acgtcaagat      4140
     aatatcatta ggcaggaaca cgatagagcc catagaggaa tccaagaagt cgaacaacag      4200
     ataaaaagat cctacttttt ccctgaaatg gtcaaaaaga taagacggtt taacaatgct      4260
     tgtcaaatat gttccgggca caaatatgat agaaaaccat ataacataaa aatttcacca      4320
     agacccattg aaatagcacc ttttcataga atacatattg atatttttgg aatggacaaa      4380
     attaactatt tgactataat ttgcgcattt tcaaaacatc tgcaggctat taaaattgaa      4440
     acaagaaata ctattgatat ccaaaatgcc cttaatcaat atttttcaaa ctttgcaata      4500
     ccacgatcca tagtgtgcga ccatgaagcc gcatttacga gtatacagat ggcagattac      4560
     cttgcaaatt taggaactca aatggatttt gcatcatcat ccgagtccaa cgggcaaatc      4620
     gaaaaaacgc attgtacttt aattgagctt tacaacacaa acaaacacaa atttccgaac      4680
     atgtcttctg aacagattat gggaattata gtggcattgt acaacaacac agtacactcc      4740
     gctacgggat tcaccccaaa tgaaataata tttaacagaa cagatgcgat aagtcctgcg      4800
     gagatcgata ataacgcaaa cagaattttc agaaaagtaa cagaaaactt acagaaagcc      4860
     caacagaaaa tggaacgtta caatgacgaa aaagaagacc ccccagtaat agaagaggga      4920
     cagacaatat ttgttaaacg cggtaccaga aaaaaattgg atcctagatt caacacgacg      4980
     aaatgcttgg aaaataaaga aaaaactatt aaaattccta gaaatacaaa gcggaataaa      5040
     aacaagatta aaagaataag gaaaccataa tatttgttct ttattaatca atactttact      5100
     tttcatttca gagaacccac ttttatttta aacttatgca acccggacag acatcgttgt      5160
     gaatatcacg tacattttta acaatcaaaa ctaaaagatc aattcattta tagaatcaac      5220
     caaccattgg gaggaacctt tcataccttg acgacataca taaccagcca ggaagccaaa      5280
     atttgccgta taatatcaca aattgcacat tttcagacaa agcatatttg atttaacgga      5340
     taaaacacag catacggtca acctatacat ttgatttatc taattcaaaa attaaacttt      5400
     aagttagtta aaagcaacta tgactattac gcaatttgta ctacttgtgt tatgtgtaat      5460
     ttcaaacgtt cacccacaat cgttaaacat tagaaacctt tataatgaac cacttttatt      5520
     attgaaattt aaagactgta gaattcaaaa atcttttata aaaatagtac atccaatcaa      5580
     tcttacatct atcgaaacag aggttatacg tatagttaaa ttagccagtc agttagatca      5640
     atctttacag atttctcaat taacgattca gaaaagccga atgttgatca acaatcttcg      5700
     acagctgaaa ccaatccatc ataggagagt acgacgctgg gacaccattg gaaaagcctg      5760
     gaagtggcta gccggaaccc ctgacgcaga cgatctcagg atcataaaca gcactatcaa      5820
     ccaacttata acgcaaagca ataaccaggt aatcataaac cagatgataa cgaaacgaat      5880
     aagcggaatg acaagcgttg taaacgaact tataaacaaa cacaacatgg agaacagaat      5940
     aattcttaag gaatacgatg ccctaacact catactgtat atagacagca tgaaccatat      6000
     tatcgaggaa atccaagata ccgttttgcg taccaaaata atgctcccta acaacaaatt      6060
     actaacgctc aaggaaataa cattagtcga atcgcttctc gtcgaacagg gaataaacgt      6120
     acggtttccc gaagaagcac tcgagtatgc tacaccaaaa gttgccatca gagaagattg      6180
     tttgctctat atcctacaga ttccaaaact ctacgaccaa aatgcggaag tcatcgaaat      6240
     tattcctttg actacgaata actacatcat cccagaagca ccaaaatacg tgataaaaat      6300
     gcagaacagt tggtttctaa cacactatcc agagaaaacc atccaaaagg aatcagactt      6360
     aagcacaatg aatgacgatt gcatccacgc tatactcaaa ggtgcggtaa gtcattgtaa      6420
     aaccatagaa aatcatgaca tcaccattaa acaggtgtca agaaataaaa tcttaatcaa      6480
     caatagcaaa caatcctata ttggatcgaa ctgtggccca cataatcgat cactaacagg      6540
     taactactta attacattcc ataattgtac ggtagttata aataacaaag tatacgcacc      6600
     agaagaagtg atcgacaata taacgtacga tttccaagga gcttttccca atttaaaaat      6660
     caattggagc tttacagagc attacaatat ttcaacactc aaaaattcaa cagaattcaa      6720
     cagagagcac atggagctga tgaaactgga acaaagtcaa cataaatcat ggatcatcac      6780
     ccttgccgga ggactctcaa ctacaacgct aacaataatt ggaatatttt tatacgtttg      6840
     tctccgtaga agaaaactta tcatcaaaat caaaaacccc ggaagaatta accaaaagct      6900
     cgaggacgac ctttctctac ccccccgagg agttaccg                              6938
//
ID   Gypsy-617_AA-LTR repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-617_AA_;
KW   Ty3_gypsy_Ele49; Gypsy-617_AA-I; Gypsy-617_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-342
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 342 BP; 109 A; 71 C; 73 G; 89 T; 0 other;
     tggacactcc accagtaccg gcagctaacc ccattgcaca acatgcgacc ggatgcattg        60
     taagcacctt acgcacctag caacaacgac gagtgacgac aacaacgacg acgcatcatc       120
     ggttggtcaa cattttaggc tacatgcaga ctcagcagat tatgctatta aatagggccg       180
     ataggattcc gatcaggcag tcatcagtgg ttattatgtg aagatagtcg aattgtgtta       240
     attaattgtg taaaagtgaa taattgtcga taaagtaaat gtaacagtga ttaaatcttt       300
     ttttaaaaat ccgatcacga tagccctgtg attattggcg ca                          342
//
ID   Gypsy-618_AA-I repbase;    DNA;    INV; 4623 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-618_AA_;
KW   Gypsy-618_AA-LTR; Ty3_gypsy_Ele27; Gypsy-618_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4623
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3504-3974] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1332..2540
FT                 /product="Gypsy-618_AA-I_1p"
FT                 /translation="MVNGKTVRMQLDTGSDVTIISSKTWKKIGSPQMNSSS
FT                 IVAKAATGKPLELLGEFSCDMSIGEKNMRSLVRVSKENLHLLGSDTIETFG
FT                 LWSVPFDTLCGKVSSESMCVDALKQKFPEVFSEQLGLCSKTKVKLELKPGK
FT                 TPVFRPKRPVAYAMCQAVNDELDRLEQDGIISPVDYAEWAAPIVVVRKANG
FT                 SIRICGDYSTGLNDALQPNQYPLPLPQDIFASLANCTVFSQIDLTDAFLQV
FT                 EIDEGSRQLLTVNTHRGLYQYNRLPPGVKAAPGAFQQIIDTMLAGLPCVSG
FT                 YLDDVVVGGIDEADHKKNLEAVLQRLKEFGFTVRAEKCTFGKEQIGYLGLL
FT                 MDRHGLRPDPAKIETILKLPVPSDVSGVRSFLGAINYYGKFVPNMRSLRFP
FT                 LDELLKEGA"
FT   CDS           2823..4610
FT                 /product="Gypsy-618_AA-I_2p"
FT                 /translation="MIFGRKFRLQTDHAPLLRIFGSKKGIPVYTANRLQRW
FT                 ALTLLLYDFVIEYVPTHKFGNADVLSRLIDNHAKPDEDYVIASVILEEDMR
FT                 SVVNEASSVFPLSFKVIEKDTQSDPKLRKVYRYLQDGWPQGTKIVDAEIGR
FT                 FHGCQESLNTVGGCLMFGERLVIPEKHRSRCLRQLHQGHPGIQRMKAIARS
FT                 FVYWPSLDEEIVAYVKSCKHCAAVAKSPPHSPPVPWPKPVGPWKRVHVDYA
FT                 GPIEGDYFLLAVDAYSKWPEIIPTRRITTAATISILRGLFARLGMPEVLVS
FT                 DNGTQFTSEDFQKYCANNGIHHVTTAPFHPQSNGQAERFVDTFKRSVKKIQ
FT                 EGKSTSSLQEALDVFLLVYRTTPNRQVVDGKTPSEAMFGRRIRTNLDLLRP
FT                 PPVSPAVLAKSEDDSNKRCFATHDPVYAKLFTKNKWRWAPGVVCERIGHVM
FT                 YSVWIEDRRLIRAHINQLRSRSSAAGSEQVENGRRDRSQLPLEILLDSCSL
FT                 PKHSLQPTAPPAEQPMTPLQSSSASHEIQSSQQFDDQASPRTSVRSSGSSS
FT                 TPSSTTSLSGASPEFASASSGPATPIQVQPRRSSRTRRPPRWFDPYRLY"
XX
SQ   Sequence 4623 BP; 1227 A; 1073 C; 1247 G; 1073 T; 3 other;
     taaaagtggc gacttcggaa gtggagcatt agtgtagttt tgcgctgcaa aattcaggca        60
     aaacgtaccc cccacgcaag aggaggagaa tgtcgtccgg agacaatggt cagcctaatc       120
     cggtcggtaa tgaccaacag ccgttgggaa atggcgatgt tagacaacag cagccgtcca       180
     ttcgtcctcc actacttcaa caagtcccac cgcgtctgcc accgcctacc gatccgtata       240
     tccagtggtt ccagcagcaa caacagcaat acgtcacgga gctgtttcgt caacaacaag       300
     aggcaattag tcgacagcaa gaagccatga atcagcagca acaaatgttc atgcatcagc       360
     aggagcaatt acttcggagc atcatgactt cgatccatgt acaagtgccg ccgaatccgg       420
     aggcaatact ggactcgctt gccaacaatg tgaaggagtt caggtatgat ccggagagca       480
     gcgtaacgtt ttcggcgtgg tacaagaggt atgaggactt attcgagaag gatgctagtc       540
     ggctcgatga gagtgcgaag gttcgtctgc tcatgagaaa gctgggaatg tccgagcacg       600
     agcggtatgt gagcttcata ttgccgtaaa gccccaacaa gacttttcgt tcgaggaaac       660
     agttaaaaag ctcaattcgc ttttcggcgc ctcggagtcc gtcatcagcc ggagataccg       720
     ctgtctacaa atcgtgaagc agcccacaga ggactacgtc acgtacgctt gtcgcatcaa       780
     caagtcgtgc gttgagttcg agctcacgaa actaacggag gaacaattca aatgcttagt       840
     tttcgtttgc gggctgaagt ctgacagaga cgccgaagta aggacacgct tgttgactcg       900
     catcgaagaa cgtgatgacg tcacgttgga gcagatttcc gaggagtgcc aaagattagt       960
     gaatttgcgg cacgacacag aaatgattga gaacccggca tcagtgaacg caatgcgatc      1020
     agtggaagca attcaagaag agttccccga agttcaagcc gaattccagc agtgagaaga      1080
     gaaacggaaa tagtgctaat ggtccggaag tgttatgttg gctgtgtgga gcaccgcatt      1140
     atgcgagaga ctgttcgttc aggaatcata agtgcggtga ttgttctaag accggccaca      1200
     aagaaggata ttgccggagt gccgagaaag tgaaaactgg aagatttggt cggcgtaaag      1260
     gcaatgcttc tacaaaggtg gtgacagtga atgcttgcag tgtgcagaag cgtaggaagt      1320
     tcgtttcagt gatggtgaac ggcaaaacgg tgagaatgca gttggatact ggctccgacg      1380
     tcaccattat ttcgagcaaa acgtggaaga agattggaag tcctcagatg aattcgtcat      1440
     cgatagtagc gaaggccgct actggcaagc ccctcgagct gctgggggag ttttcgtgcg      1500
     atatgagcat cggtgagaag aatatgcgca gcctagttcg agtgtctaag gagaatctcc      1560
     atctgctagg gtccgacacg atagaaactt ttggactgtg gtcggtgccc ttcgatacgc      1620
     tttgtggaaa ggtgagcagt gagtcgatgt gcgtagatgc gttgaagcaa aagtttccag      1680
     aggtgttttc tgagcaatta ggtctctgtt ccaagacgaa agtgaaactg gagctgaagc      1740
     caggcaaaac cccagtattt cgtccaaaac gaccggtggc atacgctatg tgtcaggctg      1800
     tgaacgacga actagaccgc ctagagcaag atggaatcat ttcaccagtg gattacgcag      1860
     aatgggcagc tccaatagtg gtggtccgta aagcgaatgg atccattcgg atctgtggcg      1920
     attactccac gggcctgaac gatgcgttgc agcctaatca atacccgctg cctctgccgc      1980
     aggatatttt tgcgagtctg gctaactgta cagtttttag tcagattgat ttgactgatg      2040
     cattcctgca ggtagagatt gatgaaggat caagacagct gctaacagtg aacacacacc      2100
     gcggcctgta tcagtataat cggctgccgc cgggtgtgaa agcagcgcca ggagcttttc      2160
     aacaaatcat tgacacgatg ctggctggtc tgccctgtgt tagtggatat ctcgatgacg      2220
     tggtggttgg tggaatcgac gaggccgacc acaaaaagaa tttggaagcc gtgttgcaga      2280
     gattgaagga atttggtttc acagttagag cggagaagtg tacattcggc aaggaacaaa      2340
     tcggctattt gggattgcta atggatcgtc atggattgag gccagatcca gcgaagatcg      2400
     aaaccatttt gaagcttcct gtgccctcgg atgtcagtgg tgttcggtca ttcttgggtg      2460
     caatcaatta ttatggaaag ttcgtgccca atatgcgatc tttgaggttc ccgctcgacg      2520
     agttgctgaa ggaaggagcc amgtttcagt ggacagcgga gtgtcagmat tcgttcgatc      2580
     gtttcaagga aattttgagc tcagatcttc tgctaactca ctacgatcca cagcgtgaga      2640
     taatagtgtc tgccgatgcc tcatcagttg gagtaggtgc cacgatcagc cacaaatttc      2700
     ckgatggctc agtgaaggtg gtgcagcatg cggccagagc gctaacgaag gcggagcaac      2760
     gctacagtca gccggaccgc gaaggactgg caatcatttt tgctgtgaca aaatttcata      2820
     aaatgatctt cggtcgcaaa ttccggctcc agacggatca cgcacctttg ttgaggattt      2880
     ttggatcgaa aaaggggatc cctgtgtaca ccgcaaatcg tctacaacgg tgggcgctaa      2940
     cgctcttatt gtatgatttt gtcatcgaat atgttccgac acacaagttt ggaaatgctg      3000
     acgtcctctc gcggttgatc gataaccacg ccaagccgga tgaagattac gtcatcgcca      3060
     gtgtcatcct agaagaagat atgaggtcag tagtgaatga agcttccagt gttttcccgc      3120
     tcagtttcaa ggtaattgaa aaggacactc agtcagatcc gaagcttcgt aaagtttacc      3180
     gttacctgca agatggttgg ccgcaaggga ccaagattgt tgatgctgaa atagggcgat      3240
     ttcatggctg ccaggagtcg ttaaacacag taggtggatg ccttatgttt ggagaacgac      3300
     tagtgatacc tgagaaacat cgaagccgat gcctgcgaca gcttcatcag ggacatccag      3360
     gtatccaacg aatgaaggcc atcgctagaa gttttgtata ttggccttcg ctggatgaag      3420
     agatcgtcgc atacgtcaag tcctgcaaac attgcgctgc tgtggcaaaa tcaccgccgc      3480
     attcgccgcc agttccgtgg cctaagccag taggtccatg gaaacgggtc catgtggact      3540
     atgcgggacc gatagaggga gattattttc ttctggccgt tgatgcgtac tccaaatggc      3600
     cggagataat tccaacacga cgaataacaa cagcagcaac gattagcatt ctgagaggtt      3660
     tgttcgcacg ccttgggatg ccggaagtgc tcgtcagcga caatggcaca caatttacga      3720
     gtgaagactt ccagaaatat tgtgccaaca acggaattca ccacgttacc acggctccgt      3780
     ttcaccctca atccaacggg caagcggaga ggttcgtgga tactttcaaa cgttcggtga      3840
     agaagattca ggaggggaag agtacgagtt cgctacaaga agccttggac gtttttctgc      3900
     tggtttatcg gacaacccca aaccggcaag tcgtcgatgg aaaaaccccg tccgaagcga      3960
     tgttcggacg ccgcatacgt acgaatttgg atttacttcg tcccccgcct gtttcgcctg      4020
     ccgttctagc caagtcagaa gatgactcga ataaacggtg ctttgccaca catgatccag      4080
     tgtacgcgaa gcttttcacc aagaacaagt ggcgctgggc tccaggcgtg gtctgcgaac      4140
     gcattggcca cgttatgtac agcgtatgga tagaggaccg tcggttgata cgcgcacaca      4200
     ttaatcaact gcgcagtcgc tctagcgccg ctggttcaga acaagtcgaa aatggaaggc      4260
     gtgaccgatc tcagcttccg ctggaaatcc tgcttgattc ctgtagtttg cctaaacatt      4320
     cgttacaacc gactgcaccg ccagcagagc agcctatgac gccactgcaa agttcgtctg      4380
     cgtctcatga aatccaatcg tctcaacaat ttgatgatca agcaagtccc cgtacgtctg      4440
     ttcgaagctc aggatcgtct tccacaccat cgtcgacaac gtccttatcc ggagcatccc      4500
     cagaatttgc ttcagctagc agtggacctg caacgcctat acaggtacag ccacgccgct      4560
     cttcaagaac ccgaaggccg ccgcgttggt tcgatcccta ccgcctgtat tgaaagaggg      4620
     gga                                                                    4623
//
ID   Gypsy-618_AA-LTR repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-618_AA_;
KW   Ty3_gypsy_Ele27; Gypsy-618_AA-I; Gypsy-618_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-315
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 315 BP; 71 A; 66 C; 75 G; 103 T; 0 other;
     tgttggagtg ctaacggaat atgcggggtg cccaaccaag cacgccgctg agctcgagtt        60
     ggcagcgtga gctaccacac tatgatgcca tcgttcccgt atgtatgttc ctgtacctat       120
     aaatacatcc taagccatat gtgtcgtttt gtattgtatt gtgttacgta atagtcagtt       180
     gaataaagat gtcgttttta gaaggtttta ttgtaacgac gcgcgtttta atttgttaaa       240
     tatccgcgcc tatttattgt ggtttcgcgc ctagtattcg cgttcgcgag ttcggccacc       300
     ttaggtccga aatca                                                        315
//
ID   Gypsy-619_AA-I repbase;    DNA;    INV; 6475 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-619_AA_;
KW   Gypsy-619_AA-LTR; Ty3_gypsy_Ele152; Gypsy-619_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6475
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5259-5738] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3276..6083
FT                 /product="Gypsy-619_AA-I_1p"
FT                 /translation="MLTCNNFYKQKINLNDQTPVYIKNYRTPEVHRTEIDR
FT                 HIDKMLEEQIIQPSISPYNSPVLLVPKKSATGDKKWRLVVDFRQLNKKVIA
FT                 DKFPLPRIDDILDQLGRAKYFTTLDLMSGFHQIELDEESKQYTAFSTNSGH
FT                 YEFNRLPFGLNISPNSFQRMMTIALSGLPPECAFLYIDDIIVVGCSIKHHL
FT                 NNLEQVFQNLRKYNLKLNPAKCRFFCADVTYLGHHISEDGIQPDKSKYSTI
FT                 LNYPKPQNADDVRRFVAFCNYYRRFIPYFSDKAAPLNALLAKKTIFKWTEE
FT                 CQNAFETLKNELLSPRILQFPDFSKPFILSTDASKIACGAVLEQEHNGIRL
FT                 PISYASKKFTKGESNKSTIEQELTAIHWAISHFRPYLYGRKFTVKTDHNPL
FT                 VHLFSMKDPASKLTRMRLDLEEFNFEIEYVKGRENVGPDALSRIDIDSEIL
FT                 KNMSILPMQTRSKTRNMTTEAKVNKPNAEKIDQLHAYDSINNIDAFNLPKL
FT                 TFQALSEQLIINIKSKNLKGIIAQGQIFQQKGMVYINECMNLLNEMAKTTN
FT                 MKKLAISVMDPIFNYISREQFKQSCNENLSDVTIIIYTPAMVIQDENEINK
FT                 LIKENHDTPSGGHVGINKLLLKLRRKYYWKNMKNSISKYVKNCISCKLNKH
FT                 SIKTQENFEKTTTPTKPFELVSIDTVGPLTRSIKGNRYALTLQCDLTKYIV
FT                 TVPIVDKQASTLAKALVEHFILIYGCPRAIKSDMGTEYKNEVFQQICNILE
FT                 INQKFSTAYHPETIGALERSHRCLNEYLRQFINEQHDDWDSWLPYFTFFYN
FT                 TTPHTEHSFAPFELIFGTQVNYPTKFKNNTTIDPIYNFEAYYEELQFKLHT
FT                 AALKAKLLLEKSKEKRISKQIQNSNPIEIQTGSKVWLKKENRRKLDPVYTG
FT                 PFTIIEINHPNVTIKNQMSNETQTVHKNRIII"
XX
SQ   Sequence 6475 BP; 2561 A; 1270 C; 989 G; 1651 T; 4 other;
     tggcgaccgt gacaggttat cttttatctt ttataagacc ctgtaatcct acgattcttc        60
     cgcgcgcatc caagtatcta tgtcggttac ccgtcggtcg cgcgcatcga agttaaatta       120
     actgtgtgtc tcaagtgaaa agtgatatac accgtgaaaa atgggatggt tctctagtga       180
     cgaaatcgtc acaaatagtg ctgtgtgtcc tccgcaagaa aattatcacc taacacaggc       240
     aatcgcactc gctgtgttag caggcattgc cgttgggtac attgtaacga aaatagtggt       300
     aaaagctcat aaaaatcaca ccataagagt agcggaaaga gcagttcgcg ttgctaacgt       360
     gtaaagtgac aataaagtta acagtgaaca ctggacaaat ccaaaatgaa agtttaagat       420
     ggcagcaaaa gaaaatatta caataacatt gaacagattt agaaaatcaa tcgcagcaaa       480
     agtgccaata atagtgaaca caaattcaag ttgcttaaaa ggacttgttc aggcactaga       540
     acacgaaaaa ttaataacag tgcttaaagt gtacaaagac tcatgtgtag tgaaagtaac       600
     aaccggaata accacaatag aagtactacc gcatttccaa caaacgaaga aaagccaact       660
     cgcagtttgg cggcaaaaat ttctaccacg tggaaaagga catttaatca tctcaaccaa       720
     taaagggatg atgtcggaca gcactgcaga acaaaaacaa ttaggtggtc aaatagtagg       780
     attcgtctac taagaaaata cacaaaaatg ttgttctctt ctctcaaaaa aacaaaaaca       840
     tgttcaaaaa acaagaagat taagttcaag ccatttgaag ggaaaacggt gaatacgcag       900
     tatgaacgat acgacgttga acaatatttc tgcgtaggag gtaatttagg cgacaaaaca       960
     aaagtgaccc gttacgaaga aaaagaaaca agaaaaaaag acgagtgcat accgtattgt      1020
     ttacagttcc gctcgtttaa agcacatgaa cgataccaca gtgaaataaa caaaaaaata      1080
     gacaaagaaa aaaacaaaca aacaataagt gcagtgtcga aagcagaata atgaggccga      1140
     tattacaatt tttggctacg aatgtgtacg agatcaacgc gtcgacaggt gacgtatttc      1200
     actacgtcag tttgactaac gatgactttg aagctgacga gttaatgaga tcactacaac      1260
     aagtgcagtc ccaaccccag caacaggacg aacacccatc aacgccaagt gcgccttcaa      1320
     tgtaacagat accagatgag cagcatttag taagtaatag gaaatatatc atcaaaaata      1380
     gcccacagcc cacatgtcat acctagaaat ggttattgaa gaaaaaattc atgaactatt      1440
     gattttgaaa acaaacttcg ataaaaaccc ttatcgaaat taccgtagaa taactctmtt      1500
     gaacaaattg gttcaagcta aaactattta caataaaata attgaattaa ttacaacaaa      1560
     cgaatttaaa ttaaccgaaa gcaaactaaa cataaatatt aaactaagtc gaaatttata      1620
     ttacgaaatc aatcaactaa ttgcctcaaa actaaaaaac accaaagaca atttcaaatt      1680
     tcgttcagtg gtgaaaggtg tgatattttg tctaagaata aaaaaattta actatacaaa      1740
     aacaagcaat ggctagtata attgaaatta taaaagtggt tacttcactt gtacctattt      1800
     atgatggaaa aggtgaaaag ttggaaaata ttatagcagc tttagaggca tgtaaacctc      1860
     taataaacga tgccaatcga caagcagcta ttcaaacaat tttatctaga ttagaaaata      1920
     aagcacgtgc agcagtaact gataatcctg ctagcattga tataatcata aacaaattga      1980
     aggaaaagtg cactgttaaa gtagcaccag acactatatt agctaaaatt aacgcaacaa      2040
     ggcaaaatgg aaattttgac aattttgcca ctaccataga aaaattaacc atcgatttag      2100
     aaaaagctta tmtaggagac gaagttcccc ttgatacagc taccagactt gcaaataatg      2160
     ccggaataag aggtttaact aatggaataa aaagtgagca aacaaaactg ttgttgaaag      2220
     ccggacaatt taccacaatt tccaaagcaa ttgaaaaagc ctcagaactc gaagcagaaa      2280
     acaatttgaa cagatcccct agtatcctac attacagttc caatccagga ccaggatcaa      2340
     gaaaccaggc ggtccgcagg ccgcggcggc cccggggccc ggggccaaca aaatacccaa      2400
     actcaaaata tccaacagca acaacagcca caacaacaac ctcacttcca agtagcatca      2460
     gcaaacatgc atcaacaaag ataaaaggaa tttttaatat ctctactgcc ctgtcaaatt      2520
     ttgtgattct gaaaacagaa tccacgcact ctgaatgtac tttcctagta gattcaggag      2580
     ctgaaatatc agtcctaaag cccacaaaat tgaaacaggc aacaaatatc aacaattcgc      2640
     atacatgttc tataacaggc attcagccca accccattga cacactcgga tcaatcaatt      2700
     tatctttaca tctaccgtat gaagtttcag caacacacac attccatatt atacccgaaa      2760
     ctcttacaat acccacagac ggaatcatag gacgagattt cctgacaaaa tttaaatgcg      2820
     ttatcgacta cgacacctgg actctttcaa gctttataaa ttcagaatta attgagatcc      2880
     ctatacaaga taaattacat gacaaaattc taataccacc ccgttgcgaa gtatttagaa      2940
     aaattcctat ccaaaacccc caccaagatt acgttatttt atcaaaagaa ataaaacccg      3000
     gagtattttg cgcgaactca gtgttaaatg ctaaaaattc acttgtaaaa attatcaata      3060
     ccacaaacta cacggtaaaa attcatgaga atctgtcaga tctacttcaa cccctcgaaa      3120
     attataacat atttactatc gatcaaacaa atcaaacaaa tcgtaaagac aaatgtatag      3180
     ctgaactcaa tttaaatgac actccttgtc acattaaaga cagattaaaa gacttatgtg      3240
     ccaaatacaa tgacttattt gcattacagg gtgacatgtt gacatgcaat aatttctaca      3300
     aacaaaaaat aaacttgaac gaccaaacac cagtatacat taaaaactac agaacaccgg      3360
     aagttcatag aactgaaatt gaccgacaca tcgacaaaat gttagaagag caaataatac      3420
     aaccatctat ttcaccctac aactctcctg tattactagt ccctaaaaaa tccgccacag      3480
     gcgacaagaa gtggcgtctt gtcgtagatt tccgacaatt aaataaaaaa gtaattgctg      3540
     acaaatttcc actaccccga attgatgaca tactagatca gttaggaaga gcgaagtatt      3600
     ttacaacact cgacctaatg tcaggttttc atcaaatcga gttagatgaa gaatcgaagc      3660
     aatacacagc tttttcaaca aattctggac attatgagtt taaccgtctt ccttttggat      3720
     taaacatctc ccctaatagt ttccaacgca tgatgacgat agccctcagt ggactaccgc      3780
     cagaatgtgc ttttttgtac atcgacgaca taatagttgt cggatgctcc attaaacatc      3840
     atttgaataa tttagaacaa gttttccaaa atcttcgaaa atacaatcta aaactgaacc      3900
     cagcaaaatg tagatttttt tgtgccgacg tcacatattt aggacaccat atttcagaag      3960
     atggtatcca accagataaa tcaaaatatt caactatact taattacccc aaaccacaaa      4020
     atgcagatga cgttaggaga ttcgtcgcat tttgcaacta ttacagaaga tttatccctt      4080
     acttttctga taaagcagct ccattaaacg cacttttagc caagaaaaca atattcaaat      4140
     ggacagaaga atgccaaaac gcttttgaaa ccctgaaaaa cgaactacta agtccaagaa      4200
     ttcttcaatt cccagatttt tccaaaccct tcatactaag cacagacgca tcaaaaatag      4260
     catgcggagc tgtgttagag caagaacata acggaattag attacccata tcatatgcta      4320
     gtaagaaatt tacaaaagga gaaagtaaca aatccactat tgagcaagaa cttacagcaa      4380
     tacattgggc tatctctcac tttagaccct atctctatgg tcgcaaattc acagtaaaaa      4440
     cagaccataa ccctctcgta cacctttttt ccatgaaaga tcccgcgtct aaattaacta      4500
     gaatgcgatt agatttagag gaattcaatt ttgaaatcga atacgtcaaa ggaagagaaa      4560
     acgtagggcc cgacgctctt tcacgtatag atattgattc tgaaattctt aaaaatatgt      4620
     ctattcttcc aatgcagacc agatccaaaa ctcgaaatat gacgacagaa gctaaagtta      4680
     acaagccaaa tgcagagaag attgatcaac ttcacgcgta tgactcgatt aacaatatcg      4740
     acgctttcaa tttacctaaa ctaaccttcc aagctctaag cgaacaatta attataaata      4800
     ttaaatccaa aaacctgaaa ggaattattg ctcaagggca aatattccaa caaaagggaa      4860
     tggtttatat aaatgaatgc atgaacctac tcaacgaaat ggccaaaact acgaacatga      4920
     aaaaactcgc gatcagtgta atggatccga tttttaatta tatttcccgg gaacaattta      4980
     aacaatcatg caatgagaat ttaagtgacg tcacgattat tatatataca ccagccatgg      5040
     tgatacaaga cgagaatgaa ataaataaat tgataaaaga aaaccacgat accccttcgg      5100
     gaggacacgt aggtattaac aaactacttc ttaaacttag acgtaaatat tactggaaaa      5160
     acatgaaaaa cagcatttct aaatatgtga aaaactgcat ttcgtgtaaa ctaaataaac      5220
     attcaatcaa aacgcaagaa aactttgaaa aaacaacaac tcctacaaaa ccctttgaat      5280
     tagtttcaat cgataccgta ggaccactta ctaggtcaat taaaggaaat cgttacgcat      5340
     taaccttaca atgcgatcta acgaaatata tagttaccgt accaatagta gataaacaag      5400
     caagtacact agctaaggct ttagtggaac actttatttt aatttatggt tgtccacgag      5460
     caatcaaatc cgacatgggt accgaatata aaaatgaagt attccaacaa atttgcaata      5520
     ttctcgaaat aaaccagaaa ttttccacag cgtaccatcc agaaaccata ggagctctcg      5580
     aaagaagtca tcgttgttta aatgaatatc tcaggcaatt catcaatgaa caacatgatg      5640
     actgggactc ttggttacca tattttacat tcttttataa cacaacacca cacactgaac      5700
     attctttcgc accatttgaa cttatctttg gcactcaagt aaattatcca acaaaattta      5760
     aaaataatac cacaatcgat ccaatctaca attttgaagc ctattacgaa gaattacaat      5820
     tcaaattaca tacagcagcg ctaaaagcaa aactattact agaaaaatcc aaagaaaaaa      5880
     gaatctcgaa acaaatacaa aattcaaacc caattgaaat tcaaacagga agcaaagttt      5940
     ggcttaagaa agaaaaccga cgaaaactag atccagttta tacaggaccg tttactatca      6000
     tcgaaataaa tcacccaaat gttacaatca aaaatcaaat gtcaaacgaa actcaaacag      6060
     tacataaaaa cagaattatt atctaaacta aatcttaaat ttatccttaa ctcatttatt      6120
     ttcatacaaa ttaatccatg tttataaaat tctatatwtt tttcaatttt ttttttttgt      6180
     ttataaaaac catwattttt gtaaaacaat gttatcttaa gaagtgttta ttttaagaca      6240
     cccgagccta atctcaaaaa aaaataagaa acgaaaaaat aagtgaaaaa agagataggt      6300
     caaaagtcta acctcgagtt agacgtgaga aattcggcat ttaatattaa atagattaat      6360
     aaccaaaatt ttgttaaact tacctaaaaa ttgtaagaga ctactggaga aagacattaa      6420
     ctgaataatt acacttcatt tcattatgtt acattattct cctaaagggg gaagg           6475
//
ID   Gypsy-619_AA-LTR repbase;    DNA;    INV; 592 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-619_AA_;
KW   Ty3_gypsy_Ele152; Gypsy-619_AA-I; Gypsy-619_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-592
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 592 BP; 202 A; 144 C; 106 G; 140 T; 0 other;
     tgtcgtgggt tgagaaccac tgatcaccga aacccacaat cataaacaaa ctcaaaggcc        60
     atccgcctga aaccgaccaa tgcactcgaa aagtgcaaga tattgaaatt acaaccatat       120
     gcgacaaccg cacctcaagt gccagaatta tttccattcc tttttccctc ctccgcgtga       180
     gccctacacg gacgggcaaa cgaaatcgaa aggtttcaaa ttgcatcgcc ctggccggac       240
     caccgagata cgaattgccg aaatagcaag atgcacattt ttgggcacgg accacctagg       300
     catacaaaat gccacatttg caaagatgaa taatttttaa gtatggactc cagttgtctc       360
     attctcacca atagaaaata gattaagcag ttaaacattg taagcttttg taacaatata       420
     taaacccaga aacgacgaaa taataaacag attcttacga accagaaact gggaaaggag       480
     tctcgacttt tattgagtcc ttactggtga tagctctcga gctcaccata gtttggatac       540
     tctacaaaga aaagaccttc tccaatattt ctaaataccg taggatgcca ca               592
//
ID   Gypsy-61_AA-I repbase;    DNA;    INV; 5319 BP.
XX
AC   AAGE02020262;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_AA_;
KW   Gypsy-61_AA-LTR; Gypsy-61_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020262; Positions   27560   22242.
XX
CC   Positions [4063-4533] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           871..2502
FT                 /product="Gypsy-61_AA-I_1p"
FT                 /translation="MSALIGSIDHYVRGSSFASYMKRMNILYQLNNVTDNN
FT                 KKNLFLALSGSVIFDEIELIYPGIDIADIDYGDMISKLKERLDKVQPNMMH
FT                 RHKFHARVQGVDEPAENYVLALKLLASHCGFGAHREEAIKDKIVFGLRDQD
FT                 LKHKLLMKDDMTLEEVEQMVIRTELAKCRAKELEEKNEDPREVNSVKYRLG
FT                 SQSNFNDMNRDGRQGSSNYSRRFSNRSRSTSRDRERTRFNHNRYDYYKRQR
FT                 EEYQPRNSYSDYRGQGDGNPHQNVICNFCKMRGHIKRNCYKLKNRKNVNFV
FT                 EADPVEINSYDFKRLQIRDSENEDDDYPCMMIASNRFSEPCLVKVIVEGIE
FT                 LSMEIDCGAAVTVVSLSVYRMYFSHIKVSKCSSRLVVVDGQQLSIFGEISV
FT                 KVMVNEIQHQMTLIILDCTRRFVPLFGRNWMDVFYPSWRKTFGNTMRINAM
FT                 NKDADNSLKLDMGNIESDIKSRFPKVFDGDFSNPITGYEADLVLREDRPIF
FT                 RKAYDVPFKLREKVVGHLDSLEKQNVITPLQVSEWASPVVIVPKKIMT"
FT   CDS           2508..3878
FT                 /product="Gypsy-61_AA-I_2p"
FT                 /translation="MVIDCKVSKNKQIIPNTYPLPLAQDIFASLAGCKWFC
FT                 CLDLAGAYTQLKLSERSKQFVVINTIKGLYTYNRLPQGASSSAAIFQRVMD
FT                 QILIGLKHVRCYLDDVLIAGETKEECLSNLYLVLERLQKANLKVNFKKCNF
FT                 FLNSLTYLGHLVTEKGLLPSPEKLLTIEKAKVPADTTELKAFLGLINFYGK
FT                 FVPHLSAKLNCLYALLRKDTKFVWNEKCQQTFEDSKKALLTANFLEFYDPA
FT                 KPIIVVSDACSYGLGGVIAHMVDGKEKPISFASFSLNPAQKTYPILHLEAL
FT                 ALVCTVKKFHKFLFGQKLTIYTDHKPLLGIFGKNGKHSLCVTRLQRYVMEM
FT                 SICEFDICYRPSANMGNADFCSRFPLEQGVPKKLDSGCIKSINYFGDFPLD
FT                 YSLIAKETKTDNFLSRVAICIENGWPNKTDNDLRAINIFFAIRSRGSGRLC
FT                 HIPGSSFHTRSS"
XX
SQ   Sequence 5319 BP; 1788 A; 811 C; 1172 G; 1548 T; 0 other;
     ttataagtgg acgacgagta gaaaactttt ttgatttttg tttcaaagtt tcattacaga        60
     aagcattgaa gctttttttt ttccgtatcg gtcagtgaaa gcaggaagcg tgcattagtg       120
     gaacgtgcag cgaagataat tgtcgtttac aaccatagta tcaggcagta tggaaagtca       180
     gtgagctggg tggaattgta gttaaagcag ctggcataag gaaaagttaa aaaaaactgt       240
     tgcgaaaaaa aaagtgtaaa gaaaaattgg acggaagctg tgccacatgg tctatattca       300
     gcaaaatagc cattgcaatt tttcattgtc ccgcttggtc cgccatttca aggtgtagaa       360
     gtggagttga gctttaattg aattgcttta agagagagtg agcgaaggaa ctcaaaggta       420
     ctgtataaga aacataagtg atattgagtg gttgaaatca gacggcggtt ttagctgagt       480
     gtagcgactg tcgaaacaac acagatttgt tctggcagtt gtgagcatag tcaatcgaga       540
     gatcatcagt gatatagtgt ggttgagaga tctacagcaa agtgatagaa gagagtgaga       600
     acaccaaaat aacataaaga gcttgcaggc agctgaatta gtgagaaaaa agagcgaatt       660
     gggaagtcaa cggctgagag gactgccggc gagaccaaca ttggttagga cgagcatcgg       720
     tgagacgaga gtcatttgaa taacattggt gagacgagct tcgtgagacg attcgattgt       780
     ggtgagcaga aaagagtatt aagctgtgta tcaagtaagt cattttagac catttcatct       840
     cattcaggtg tgtttatcga agtcgtcagc atgtctgcgt taatcggaag cattgatcac       900
     tatgtgcggg gctcaagctt tgctagttat atgaaacgaa tgaatatcct ttaccagttg       960
     aacaatgtta cagataataa caagaaaaac ctattcttgg cgctaagtgg gtcagttatt      1020
     ttcgatgaaa tagaacttat ttacccggga atagacattg cggatattga ttatggtgac      1080
     atgatcagta aactgaaaga aagattggac aaagttcagc ctaatatgat gcacaggcac      1140
     aaattccatg cacgtgtgca gggtgttgat gagcctgctg aaaactatgt attagctttg      1200
     aaattactcg ctagtcattg tggttttggt gcacacagag aagaagcaat caaggacaaa      1260
     attgtttttg gtttaaggga tcaggatctg aagcacaagc ttttaatgaa agatgatatg      1320
     actttagaag aggtagagca gatggtaatt cgaactgaat tagctaagtg ccgtgcaaaa      1380
     gaactagaag aaaagaatga ggatccaaga gaggtgaact cagtgaagta ccgtttagga      1440
     agtcagtcga atttcaatga catgaataga gatggaaggc aaggttcaag taactacagt      1500
     aggcgtttta gcaatagaag tagaagtact agcagggatc gtgagcgtac gagattcaat      1560
     cataatcgct atgattacta caaacggcaa cgcgaagaat accaaccaag aaacagctat      1620
     tcagattatc gtggtcaagg agacggaaat ccacatcaaa atgtaatttg caatttttgt      1680
     aaaatgagag gtcatataaa acgtaattgt tataaattga aaaatcgcaa aaatgtaaat      1740
     tttgtggaag ctgatccggt tgagatcaat agctacgatt tcaagcggtt acagataaga      1800
     gattcagaaa atgaagatga tgattatcct tgtatgatga tagcaagcaa tcgttttagc      1860
     gagccgtgtc ttgtgaaggt tatagtagaa gggattgagc taagcatgga aatagattgc      1920
     ggtgcggcag tcacagttgt tagtctatca gtatatagaa tgtatttcag ccacattaag      1980
     gtttctaaat gcagtagtcg tttggtcgta gtagacgggc agcagttatc aatttttggc      2040
     gaaatttcgg ttaaggtgat ggttaatgag attcagcatc agatgacttt aataatactt      2100
     gattgcacaa gacgttttgt cccgttattc ggcagaaatt ggatggacgt tttttatcct      2160
     agctggagga aaacttttgg aaataccatg agaatcaatg ctatgaacaa ggatgctgac      2220
     aatagtttga agctagacat gggtaatatt gaatcggaca taaaatctcg ctttccaaaa      2280
     gtttttgacg gtgatttttc aaaccctatc acaggatatg aagctgacct tgttctgaga      2340
     gaggatagac ccatatttag aaaagcttac gacgtgccgt tcaaattgag agaaaaggtt      2400
     gttggtcatc tggattcgtt agaaaagcag aacgtaatca caccattgca ggttagtgag      2460
     tgggcgtctc ctgttgttat tgttccaaaa aagataatga cataagaatg gtaattgatt      2520
     gtaaagtgtc caaaaacaaa cagatcattc ccaatacata cccgctacct ttagcacaag      2580
     acatatttgc gtcattagca gggtgcaaat ggttttgctg ccttgattta gcaggcgcgt      2640
     acactcaact caagctatcg gaaagatcaa agcaatttgt tgttataaac acaattaagg      2700
     gattatacac ttataaccgg ttgccacagg gtgcatcttc tagtgctgcc atatttcaaa      2760
     gggttatgga ccaaatttta ataggattga aacatgttcg ctgttactta gatgatgtac      2820
     tgattgcggg agaaactaaa gaagaatgtt tatcaaattt gtatttggta cttgagagat      2880
     tacaaaaagc taatctaaag gtgaatttta agaaatgtaa tttttttttg aattctctaa      2940
     cgtatctcgg acatttggtt actgaaaaag ggcttcttcc atcgccagaa aaattattga      3000
     caattgaaaa agctaaagtt cctgcagata ccactgagct caaagcattt ttagggttaa      3060
     taaattttta cggaaaattt gttcctcact tatctgccaa attgaattgt ttatatgctt      3120
     tattacgaaa agatactaag tttgtttgga acgagaagtg tcagcaaact tttgaagata      3180
     gtaagaaagc tctattaact gcaaattttc tcgaatttta cgacccggca aaaccaatta      3240
     ttgttgtatc tgatgcatgt agctatggat taggaggagt gatagctcat atggttgatg      3300
     gtaaagaaaa acctataagt tttgcatcat tctctttaaa ccctgctcaa aaaacatacc      3360
     caatcttgca tttagaggca ttagctctag tatgcactgt taaaaaattc cacaaatttc      3420
     tttttggaca aaagttaaca atttatacag accacaagcc gcttttggga atttttggca      3480
     aaaatggcaa acattcgctt tgtgttacaa gattgcaaag atatgtcatg gaaatgtcta      3540
     tttgtgagtt cgacatttgt tacaggcctt ctgccaatat gggaaatgca gatttctgct      3600
     caagatttcc tctagagcaa ggtgttccca agaaactgga tagtggttgc atcaagagta      3660
     taaactattt tggagatttt cctttggatt attctttgat tgcaaaagaa actaaaacag      3720
     ataattttct ttcaagagtg gcaatttgta ttgaaaatgg gtggcctaat aaaacagaca      3780
     atgatttgcg agcaataaat attttctttg cgattcgatc tagaggtagt ggaaggttgt      3840
     gtcatatacc aggatcgagt tttcataccc gttcctctta ggaatgatat tttgaagctg      3900
     cttcattcca atcacaatgg gattgttaaa atgaaacaaa cagctcgccg atctttgttt      3960
     tggttcgatt tgaataaaca catagaatta tttgtaaaac actgcgaacc atgtataaaa      4020
     atgtcagtgg tacctaaacc ggtttgtagc acttcatgga ctccaacaaa tcggccattc      4080
     agtcgtattc atgctgattt ctttttcttt gaatcaaaaa catatttttt agttgtggat      4140
     agttatacaa aatggcttga agtggatata atgagatatg gaacagatgc aaacaaagtt      4200
     attaagaagt tcacagctat ttttgctaga tttggactac cagacgttct agtgacagat      4260
     ggagggccac cattcaattc tagtcatttt gttaaattta tggaacgtca gggtatacgg      4320
     gtcatgaaaa gtcctccgta taatcctagt agcaacggac aagcagagag aatggttaga      4380
     ttagttaaag atgtattaaa gaaattcctt ctggatcctt tgataaaatc acttgatgat      4440
     gatgatagat taacttattt tttagcgaac tatagaaaca cttgttcttc gtcagatgaa      4500
     agatttccaa cggagaaact tttgagctac agacctaaga ctttagttga cattttgaac      4560
     cccagacata gttataaaga ttttctggta cgaaaagatt tgtccccatc aagtaaataa      4620
     aaaaataaag acattttagc ttcaaataaa gagacaaaat atgacatccc gttgtccgaa      4680
     gatccatttc tcaatttagt gctaggggat agggtttggt ataaaaataa tgacaaacat      4740
     gcaattgaga aatgggtcga ggcaaaatac gtcaaaagag tatcacctaa tgtgtttgaa      4800
     atctctttcg gcaggcacaa ttgcaatgca catcggaatc aactaaagat tgtgagtccg      4860
     cgacaatcta ggtcgacaat acgactacca atacagcgac agaaacgacg tagggagtct      4920
     attgactctg aggatgactt cttagggttt tcggacgaga cgaacgcagc taggaaggat      4980
     cttgacaata cgaaacaaaa gcatgcaagg acaagcccca ttagaacgcg aagtttttcg      5040
     cgatcgaaaa gaaagaagga tgaagaagaa aatcgaaata attgaaagcc ccagtagcaa      5100
     tgaattgata ttgagtcctg ggatttgtat tcagaaatta caacttctag catgccaaca      5160
     agaaaaaaaa aagatgtatt tcattgtcag acatttggcg ctcaaagtta taggatatta      5220
     agttaagagc atgtttgtta tgaattcgaa taagattggt tgtcatcaat ttattataaa      5280
     gtaattatga attaaggtca gttcttaagg ggaaagaat                             5319
//
ID   Gypsy-61_AA-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   AAGE02020262;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_AA_;
KW   Gypsy-61_AA-I; Gypsy-61_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-206
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02020262; Positions   22241   22036.
XX
SQ   Sequence 206 BP; 75 A; 33 C; 42 G; 56 T; 0 other;
     tgttatattc ggacaaatag ccaagaccat ctcagagaga aaggaatgta aacgattatt        60
     gagagatgag agataaaacg ataaaatacg atgtaccggt tattacaata aacgcaggcc       120
     tctgtcggtc tcttgtactt tgaacgttaa acctagtggt tgtgttttat aaattagtgc       180
     tacgagaaaa ccccaaaatt tgaaca                                            206
//
ID   Gypsy-61_AnFu-I repbase;    DNA;    INV; 4566 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4566
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2945-2945 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           438..4505
FT                 /product="Gypsy-61_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDVSSKIAELVENFTRTGLVKKCEEKNLATAGXKEEL
FT                 ASRIANLCEAEERGAEPTLLNSTTMGEFADAQAMSDVFKPAMINFNDVKDA
FT                 LPTFTGDGKGLDVAKFIAEFEENALLLGWTDLQKLVYGKRLLAGPAKLFVS
FT                 SASGLCSWNKLKNTLAAEFREETKSVDVHEAMRGRRKKKEESYIEYVYAMQ
FT                 AIAKRGNMDEESICEYIVQGIDDDPRNKVCLMGAANLAELKIQLKKYQAMR
FT                 LQLPNARGGRDSATIKDAGRKCYKCGQMGHLASTCNTKSIVPKCYNCGLPG
FT                 HEARMCRNASRPKCFSCGQTGHKANECVNKTKVANSNLIVDDQEPTVSIQI
FT                 GNCVLYSLFDSGCYFNLITKAAFLKIGAPPVKNLVVELHGFGGKRTRAEGR
FT                 ISTDVSINSQFYREVPFFIVPDGTMKYEVVVGRESLQLVNAEITKDGVKLI
FT                 PRGEQRETSGADGVFLSNYFEMDNDPEIXVPEKYRETIKTYIDNYKVVRSD
FT                 SNEENSTVKLEIVPDENIQPFRHSPARLAYSEEEAVNRQVEEWLQEGVVRP
FT                 SCSNFASRVVVVKKKDGTNRVCVDFRQLNTMVLKDGFPIPVIEEVLERLQT
FT                 AQWFTIMDLENGFFHVPVEENSKKYTAFVTKKGLYEFNRAPFGFCNSPAVF
FT                 IRYVNDIFRILVNEKVMDLYMDDIVIHGETDKECIEKTERVLAVAAASGLS
FT                 IKWKKCKFMQRSVHFLGHNVCQGTISPGAEKTKAIKHFPVPKNVKAVQSFL
FT                 GLTGFFRKFVKKYSLIARPLTDLLQKNEEFRMGECELNAFESLKQLLITEP
FT                 ILRIYDRNAKTEVHTDASMKGFGATMLQWFDGGLHPVYYWSKKTTEAEAKQ
FT                 HSYVLEAKAIYLALKKFRHYLLGTTFKLVTDCNAFRQTLKKTEVPREVAQW
FT                 VLYLEEFNFEVEHRAGDKLKHVDCLSRYPRLTMTITCDVTARVKRSQQRDE
FT                 STKAICEILKDRPYADYKMKGEILYKCVEGQDLLVIPRDMEKQLISDTHNE
FT                 GHFAYHKTVHAIKQKYFIPHLENKVKQILNSCVKCIIHNKKLGQKEGFLYA
FT                 IDKGDQPLQTLHLDHVGPMDATGKQYKYVLTMVDAFSKFVWLYPTKTTGAD
FT                 ETLRKLECWSTIFGYPARVITDRGSAFTANVFGEYTNRHGIQHVVCTTGVP
FT                 RGNGQAERVNRTMLSVLTKLASDDPSKWFKVVPLVQRALNSHVHVTTSKSP
FT                 FELMFGTRMRISGAEDLVKLLEQEVYENFDDERQKMRKKAIDEIHNAQQVY
FT                 KKHYDSSRKPENVYAVGDLVAIKRTQFVAGRKLASEFLGPYEIVKVNRSGR
FT                 YKVKRAANCEGPNITTTSCDNIKLWSYAANEEAMLSGDEMESTD"
XX
SQ   Sequence 4566 BP; 1387 A; 827 C; 1223 G; 1125 T; 4 other;
     tttggtgtca gaagtgggat acgattcccg gaagaaacgg tcagcgctgt gtgcgcgaat        60
     ttgtgctgtg tgcactagag tagctgtgtg cgttgggata ctgcgtgttc ccggtaagcg       120
     ctgtgtgcgc gagttagtgc tgtgtgcact agtgtagctg tgtgcgtagg gatactgcgt       180
     gttcccggta agcgctgtgt gcgcgagtta gtgctgtgtg cactagtgta gctgtgtgcg       240
     tagggatact gcgtgttccc ggtaagcgct gtgtgcgcga attagtgctg tgtgcactag       300
     agtaactgtg tgcgttggga tactgcgtgt tcccgttcag cgcggtgtgc gcgagtttgt       360
     gctgtgtgca caagagtagt cgtgcgcgtc agaatagtgc ttgttcctag taagagctgt       420
     gtgcgacata tagaacaatg gatgtatcga gcaagatcgc ggagttggtc gaaaatttca       480
     cgcgaaccgg gttggttaag aaatgtgaag agaaaaacct tgctacggca ggtamcaaag       540
     aagagttagc gtcacgaata gccaacctgt gtgaagcgga ggagaggggt gctgaaccca       600
     ctctgctaaa ctcgaccacc atgggcgaat tcgcggatgc gcaagccatg tcagacgtgt       660
     tcaagcctgc tatgattaac ttcaacgatg ttaaagacgc actgccaaca tttacaggtg       720
     atggcaaagg actcgatgtt gctaaattta tagctgagtt tgaggaaaac gcgctattgt       780
     tgggttggac cgatctacag aagttggtgt atggtaagcg gcttcttgca ggtccagcga       840
     aattgtttgt tagtagcgcc agtggtctgt gttcgtggaa caaacttaaa aatacgcttg       900
     ctgccgaatt tcgtgaagaa accaagagtg tggatgtcca tgaagcgatg cgcggcagaa       960
     ggaagaaaaa agaagaatck tatatcgagt acgtgtacgc gatgcaggcg attgcgaaga      1020
     gagggaatat ggacgaagag tccatttgtg aatacatcgt ccagggcatc gacgatgacc      1080
     ctagaaacaa agtatgcttg atgggtgccg caaatctggc agaacttaag atacaattga      1140
     aaaagtatca agcaatgaga ttgcagctgc caaatgcacg tggcggaaga gatagtgcaa      1200
     ccattaaaga tgccggtaga aagtgctaca agtgtgggca aatggggcat ttggccagca      1260
     catgcaatac taaaagcatt gtaccgaaat gctacaattg cggtttgcca gggcacgagg      1320
     caagaatgtg ccgaaacgcg tcgcgtccca aatgtttcag ctgtggacaa actgggcaca      1380
     aggcaaacga gtgcgtaaat aaaaccaagg tggccaattc aaatttgatc gttgacgatc      1440
     aggaacccac ggtgagcata cagatcggca attgtgtatt gtacagttta tttgatagtg      1500
     gttgttattt caatctaatc acaaaagcag cctttctcaa gatcggagct ccacccgtaa      1560
     aaaacctggt cgtggaattg cacgggttcg ggggaaagcg cactcgtgca gaagggagaa      1620
     tttcgacgga cgtgtccata aactcccaat tttacagaga agtgcckttt ttcatcgtac      1680
     ccgatggtac aatgaaatat gaggtcgtgg taggaagaga gtcgctgcag cttgtcaatg      1740
     ctgaaattac aaaagatgga gtaaagctga tcccgcgcgg tgagcagaga gagacaagcg      1800
     gcgcagatgg tgtttttttg tctaattact ttgaaatgga caatgatccg gaaataawgg      1860
     ttccagagaa gtatcgtgaa accataaaaa catatatcga caattataaa gtggttcgca      1920
     gtgatagtaa cgaggaaaac agtaccgtga aattagaaat tgtgcccgac gagaacatcc      1980
     aaccatttag gcattcaccc gctcgcttgg catattcgga agaagaagcg gtgaataggc      2040
     aagtggaaga atggttgcag gaaggtgtag tgcgtccgtc gtgttcgaat ttcgctagtc      2100
     gcgtagtagt agtaaagaaa aaggatggaa cgaatcgagt gtgcgtagac ttcagacaac      2160
     tgaacacaat ggtcctaaag gatgggtttc ctatcccggt gatcgaagag gtgctggaaa      2220
     ggctacagac agcgcagtgg tttactataa tggacttaga aaatgggttt ttccacgttc      2280
     ctgtggagga gaatagtaaa aaatacactg cgtttgtcac gaaaaaaggc ctatacgaat      2340
     tcaatcgcgc accttttggg ttctgtaact cgcccgccgt cttcattcgc tatgtgaacg      2400
     atatattcag aatcttggtg aacgaaaagg tgatggatct gtacatggat gacattgtga      2460
     tacacggcga aacagacaaa gagtgtatag aaaaaacaga aagagtgtta gcggttgcgg      2520
     ctgcaagtgg tttatctata aaatggaaaa aatgtaaatt tatgcagcga tcagtgcatt      2580
     ttctcggaca caatgtttgc cagggtacga tttcacctgg agcagaaaaa acgaaggcta      2640
     ttaagcactt tcccgtacct aaaaatgtca aggcggtaca gtcgtttctg ggtcttacgg      2700
     gatttttccg aaagtttgtt aagaagtatt cactcatcgc tagacctctt accgatctat      2760
     tgcagaagaa tgaagaattc cgaatggggg agtgtgaact caatgcgttt gaatctctga      2820
     aacagttgct aataacagag ccgatactga gaatttatga cagaaatgcc aaaacagaag      2880
     tgcatacaga tgcgtccatg aaaggatttg gagcgacaat gttgcaatgg tttgatgggg      2940
     gactgcatcc agtgtattat tggagtaaga agacaacaga ggcagaagct aagcaacata      3000
     gttatgtgtt ggaggcaaag gcgatctacc ttgcgttaaa gaagtttaga cattatctgc      3060
     taggtacaac gttcaaactt gttacagatt gcaacgcatt tagacagact ctcaagaaaa      3120
     cggaagttcc ccgagaggtg gcgcagtggg tactttacct cgaagaattc aattttgaag      3180
     tggaacatcg tgcgggtgac aaattaaaac atgttgactg ccttagtcga taccctcgat      3240
     taacaatgac gataacgtgt gatgtgacgg ctagggttaa aagaagtcaa caaagagatg      3300
     agtctacaaa agctatttgc gaaattttga aggacagacc atatgcggac tataaaatga      3360
     aaggtgaaat tttatacaag tgtgttgaag gacaggatct cttagtcatt ccacgtgata      3420
     tggaaaaaca attaatatcg gacactcata atgaaggtca ttttgcatat cataaaacgg      3480
     tgcacgctat taaacaaaag tattttatac cacatttgga gaacaaagta aaacagatcc      3540
     tcaatagttg tgtgaaatgt atcattcaca ataagaagtt gggacaaaaa gaagggttcc      3600
     tgtatgccat cgataagggt gatcagccgt tgcaaaccct tcatctcgat cacgtagggc      3660
     caatggacgc tacgggaaaa caatacaagt acgttttgac catggtcgat gcattttcca      3720
     agttcgtttg gttataccct accaaaacta ctggagccga tgagacgttg aggaagttgg      3780
     agtgctggtc gacaatcttc ggttatccgg ctcgtgttat aaccgatagg ggctcagctt      3840
     tcacagcgaa cgtatttggt gaatatacta accgtcatgg tatacagcac gtcgtatgca      3900
     caacgggagt gccaaggggc aacgggcagg ccgagagggt caacaggact atgttatcgg      3960
     tgttgacaaa gctggcgtca gatgatccta gtaagtggtt taaggtagta ccgttggtgc      4020
     agcgagcatt aaattcgcat gttcatgtga caactagtaa gtcaccgttc gagttaatgt      4080
     ttggtaccag aatgagaatt tcgggcgcgg aagatttagt aaaacttcta gaacaggaag      4140
     tgtatgagaa cttcgatgat gaacgacaaa aaatgcgcaa gaaagctatt gatgaaattc      4200
     ataacgccca acaagtctat aaaaaacatt acgattcatc gcgaaaaccc gaaaatgttt      4260
     atgccgtagg agatttagtt gcgatcaaga ggacacaatt cgtagcgggt cgaaagttag      4320
     ctagtgagtt tctgggaccg tatgaaattg tcaaagtcaa ccgtagcgga cggtataaag      4380
     taaaaagggc agctaattgc gaagggccaa atataacaac gacgagttgc gacaatatta      4440
     aattgtggtc atacgccgca aacgaagaag ctatgttatc aggagatgag atggaatcga      4500
     ccgattaagg ttataagtat atcttcttga ttcttcaggg actgaagagc ggtcaggacg      4560
     gccgaa                                                                 4566
//
ID   Gypsy-61_AnFu-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2873-2873 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 187 BP; 70 A; 33 C; 34 G; 49 T; 1 other;
     tgtaaagaat taaaaaaata atatgtaaaa ggaaatatta tattttgtaa acaccctgtg        60
     ctggcgtcct gatggcagtt aaaaagacaa tcagcaggac gcgaggmaac agtgttaagc       120
     catccatcgt gaacttcgga ccgaataaaa gtgaactgtt actcaaaacc aattcttatt       180
     cttctca                                                                 187
//
ID   Gypsy-61_CQ-I repbase;    DNA;    INV; 4546 BP.
XX
AC   AAWU01037281;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_CQ_;
KW   Gypsy-61_CQ-LTR; Gypsy-61_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4546
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 501-501 (2011).
XX
DR   Genome; AAWU01037281; Positions   11501   16046.
XX
CC   Positions [1853-2458] - Reverse transcriptase
CC   Positions [3548-4009] - Integrase core
CC   'ACCTG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(455..2140,2144..4531)
FT                 /product="Gypsy-61_CQ-I_1p"
FT                 /translation="MDKWDIPPFKFRTLPRNEIRSEWNKYKRHFQYVVAAT
FT                 GEKDKTRIKNIFLAKAGPDLQEVFSSIPGADVEGSRTVDPFEVAIQGLDSY
FT                 FAPKQHESFERNLFWTLRPSTGESLEKFMIRCTEQASKCNFGRTAAESRAI
FT                 SVIDKMILFAPSDLKEKLLQVEDLNIDEAAKIISSHESIKLQAQVMGQAQL
FT                 EDMDATAGVNKIQHRPHRGPPPKCTRCGYTDHASTDRNCPARNRQCSKCGA
FT                 NGHFAVMCLTGPKRKFRDEAGPSKRWKTERIREVRTDESKPPESFIFNIGD
FT                 QNEMIWLRVGGVLLHVLVDSGCKKNIVDESSWKYLKANGVQVTNQQVNCEE
FT                 IFLPYGSQAKPLTTLGKFDAIVTIDDGGRKIEETATFYVIKEGQQCLLGRV
FT                 TATSLGVLRIGLPSTHGINAIEPKEKHAFPKISGVQVEIPIDDSVTPICQH
FT                 PRRPPIALQSRIEDKINALLASDIIEPVEGGCQWVSPLVTVVKDNGDLRLC
FT                 VDMRRANTAILRERHIMPTIEDFLPRFTTAKYFSRLDVKEAFHQVRNISGK
FT                 WLYCTGHKNIKTIIYVELKEESRYITTFITHVGLFRYKRLMYGIVIASEVF
FT                 QRIMEQILCPYSKNLVNYIDDILIFGSTEKEHDDVLRAVLNTLHDRGILLN
FT                 QEKCLFKACKLQFLGHEISSEGIEPCGSKVEALQNFRAPSTPEEVRSFLGL
FT                 VTYIGRFLPDLATVTAPLRQLTHSGVKFVWGKEQQEAFLRLKDMISNVKLL
FT                 YFFDNSLRTRVIADASPVALGAVLIQFGDETDDSPRPIAYASKSLTETERR
FT                 YCQTEKEALALVWSVERFTVYLIGRSFELETDHKPLEAIFQPTSRPCARIE
FT                 RWLLRLQSFRFHVKYRKGAGNIADPLSRLVQHSSSENFDTDNQFMILAVCQ
FT                 SVAVDIHELDQATKSDSVLEAVKQCIRTGNWDPPEAKPFHPFRSEMCVLDD
FT                 LLVRHDKLVVPDKLRARMLDLAHEGHPGESVMKRRLRDRVWWPGIDRDVTR
FT                 RVVSCEGCRLVGLPNRPEPMCRRPLPCKPWVDIAIDFLGPLPCGVYLLVVI
FT                 DYYSRYKEVELMTRITAKETVQRLDKIFTRLGYPQTITLDNAKQFVGIEIQ
FT                 EYCKTHGIYLNHSAPYWPQENGLVEKQNRSFLKRLKISHALNRDWKQDLRE
FT                 YLVMYYTTPHSTTGKTPTEMLYGRTIRSKIPALSDIEGAPSNTEEADRDRI
FT                 LKQKGKENEDARRKARESSIGTGDTVLMQNLLPGNKLSTTFNPTEYVVLAR
FT                 DGPRATIRDPNSGKSFKRNVAHLKRIEKPAADEVSTSEGAAMEGPAWSQAE
FT                 NNGNASPNRSDETQGIEDHEDVEPEQPKKPRRSLKRPARFADYVSS"
XX
SQ   Sequence 4546 BP; 1286 A; 1108 C; 1224 G; 928 T; 0 other;
     aattggcgac gaggtaaagt atgagttact gattcaagga aggggaatgg aagaaacacg        60
     gatttctttt gtttttctgt gttgtgggaa ggttaaacta agcccactaa aagtgaggtt       120
     aagacaatat atcaaggcaa atcttggtca ttagccaaag gtatattttt cattacagtg       180
     gaggccacca gggtggaccg tgtctgagtt acaactcatt cggaaagcaa ccgcaaaggt       240
     ggttgacagg acaagtagct accagggtag cggaggattg aatagccacc aagttaggca       300
     agtccaggga catagttcgc aagggcgatc ggatcgataa tcggaacgga gcacaacccg       360
     caagacggat ctggagacgt ggtaaacaaa gaaacggcaa tttgataagt caatctaaat       420
     tctaattgga gttttttttc aatcgctcta gagtatggac aagtgggaca taccaccgtt       480
     caagtttaga acgctaccaa ggaatgagat ccgttccgag tggaacaagt acaagcgcca       540
     tttccagtac gtggtggcgg caactggtga aaaagacaaa actagaatca aaaacatctt       600
     cctggcgaaa gccggtccgg acttacaaga ggtattcagt tcaatcccag gagcggatgt       660
     tgaggggtca cggacggtcg atccatttga ggtcgcaatt cagggactgg acagctactt       720
     cgcgcccaaa cagcacgaat catttgagag gaacctcttc tggacactca ggccgtcgac       780
     cggagagtcg ctcgaaaagt tcatgatacg ttgcactgag caggccagca agtgcaattt       840
     cggaagaacg gcggctgaaa gccgcgcgat cagtgtcata gacaaaatga tactctttgc       900
     ccccagcgac ctgaaagaga aattgctaca agtggaggac ctgaacatcg acgaagccgc       960
     gaagatcatt agctcacatg aatcgattaa actacaagcc caagtgatgg gccaggctca      1020
     gctggaggac atggatgcga ccgcaggtgt caacaagatc cagcaccgac cgcaccgtgg      1080
     gccaccaccg aaatgcaccc gctgtggtta cacagatcat gcgagtacgg atcgtaactg      1140
     tccggctcgg aacagacagt gctcaaaatg cggagcgaat ggacatttcg cggtcatgtg      1200
     cctcacgggg ccgaaacgaa agttcagaga tgaagccggc ccgagcaagc gctggaagac      1260
     agagcggatc cgagaagtta ggactgacga gagcaaacca cctgagagct tcattttcaa      1320
     catcggcgat caaaatgaaa tgatctggct gagagtgggt ggagttttgc ttcatgtttt      1380
     ggttgattca ggatgcaaga aaaatatcgt cgacgagagc tcttggaagt acctcaaagc      1440
     gaacggtgtc caagtcacca accaacaagt gaactgcgaa gaaattttct tgccgtacgg      1500
     atcccaagct aaaccgctga cgaccctggg taaatttgat gcgatcgtta cgattgatga      1560
     cggcgggcgg aagatcgagg aaacggcgac gttttacgtt atcaaagaag gtcaacagtg      1620
     cctacttggc cgtgtcacag caacaagtct gggagtgcta cgaatcggac tgccgagtac      1680
     gcatggcatc aacgcaattg aaccgaaaga aaaacacgct tttccgaaga tcagcggggt      1740
     acaggtggaa attccgatcg acgactcagt gacacccatc tgccaacacc cacgtcggcc      1800
     gcccatcgcc ctgcaatctc ggatcgagga caagataaac gcactactgg ccagcgacat      1860
     catcgaacca gtcgaagggg gttgtcagtg ggtctcgccg ctggtaacag tcgtcaagga      1920
     caacggggat cttcgattgt gtgtcgacat gcgcagggcg aatacggcaa tactgcggga      1980
     acgacacatc atgccaacca tcgaagattt cctcccaaga ttcacgaccg caaagtactt      2040
     cagtcgcctc gatgtcaaag aagcgttcca tcaggtaaga aatatttcgg gaaaatggtt      2100
     atactgtaca ggtcataaaa acataaaaac aattatatat taggtggagc tcaaagagga      2160
     gagcaggtac ataaccacgt tcatcactca cgtggggctt tttcggtaca agcggctcat      2220
     gtacggaatc gtgatcgcat ctgaagtatt ccaacgcatc atggagcaga ttctgtgtcc      2280
     ctacagcaaa aacttggtca actatatcga cgacattctc atttttggtt cgaccgaaaa      2340
     ggaacacgac gacgttctgc gggcagtgtt gaacacactg cacgatcgcg gaatccttct      2400
     gaaccaagaa aagtgcttgt tcaaagcttg caagctccag tttcttggcc acgagatctc      2460
     ttcggaaggc attgaaccgt gtggaagtaa agtggaagcc ctgcagaact tccgggcacc      2520
     gtcgacgcca gaggaagtcc ggagtttttt gggattggta acatacattg gccgcttcct      2580
     cccggacctc gcaacggtta ccgctccact tcgccagctg acacattccg gggttaaatt      2640
     cgtttggggc aaggagcaac aggaagcctt cctgcgtctg aaggatatga tctcgaacgt      2700
     gaaattgctc tacttttttg acaactcgct gcggacaagg gtaatcgcgg acgcgtcgcc      2760
     ggtcgctctg ggcgcggttt tgatccagtt cggcgacgaa acagacgact ccccgcgacc      2820
     aattgcttat gcaagcaaga gcctgaccga aaccgagcgc agatattgtc aaaccgaaaa      2880
     agaagcgctc gcactggtct ggagtgtgga gaggttcacc gtgtatctga tcggccgaag      2940
     ttttgaatta gaaaccgatc acaaacccct ggaagcgatt ttccaaccta cctccagacc      3000
     atgtgccaga atcgagcgtt ggctgcttcg actccaatca ttcaggttcc acgtcaagta      3060
     tcggaagggc gcgggaaata ttgccgatcc gctgtcgcgt ctagttcagc actcctcatc      3120
     cgagaacttc gacactgaca atcagttcat gatacttgct gtatgccagt cagtcgcagt      3180
     cgacatccat gaactcgatc aagctaccaa gtcggactcg gtactagaag cagtcaaaca      3240
     gtgcatccgc accggaaact gggacccgcc ggaggccaaa ccgttccatc ctttcagaag      3300
     cgagatgtgc gtgttggacg atctgcttgt tcgacacgat aagctggttg ttcctgataa      3360
     actgagggca aggatgctgg atttggctca cgaaggtcac ccgggtgagt ctgttatgaa      3420
     acgtcggctc agagaccgag tatggtggcc gggaatcgac cgagacgtca cgcgtcgggt      3480
     tgtctcgtgc gagggttgtc gattggttgg actgcccaat agaccggagc ccatgtgtcg      3540
     tcggcctctt ccgtgtaagc catgggttga catagctata gactttctgg gaccgctgcc      3600
     atgtggagtg tacctgctgg tcgtcatcga ttattacagt cgatataagg aagtagaact      3660
     gatgacgagg ataactgcga aggaaacggt gcaaagactc gacaagatct ttacacgact      3720
     ggggtaccca caaacgataa cgctggacaa cgccaagcag ttcgtcggaa tagaaatcca      3780
     agagtactgc aaaacgcacg gcatctacct gaatcattcg gctccgtatt ggccacagga      3840
     gaacggacta gtggagaagc agaaccgatc gttcctgaag aggttgaaga tcagccacgc      3900
     tctgaacaga gactggaagc aggatctacg ggagtatctg gtcatgtatt acactacacc      3960
     gcactcgacc accggcaaga caccaaccga gatgctgtat ggccggacca tccggtcgaa      4020
     gattccggcg ctcagtgaca tcgagggagc tccgtcaaac actgaagaag ccgatcggga      4080
     ccgcattctg aaacaaaaag ggaaggagaa tgaagatgcc cgacgcaaag ctcgggagtc      4140
     atccatcggg accggagaca ctgttcttat gcagaatctt ctacctggta acaagctatc      4200
     tacaacgttc aacccgacgg agtacgtagt gctggcgcgc gacggacctc gtgcaacgat      4260
     ccgcgacccg aacagcggca aatctttcaa gcgaaacgtt gcgcacctta agaggataga      4320
     aaaaccagcc gctgatgagg tgtccacaag cgaaggcgct gccatggagg gtcccgcgtg      4380
     gtctcaagct gaaaacaacg gcaacgccag cccaaaccgc agcgacgaaa cccaaggaat      4440
     cgaggatcac gaggacgttg aaccggagca accaaagaag ccaagacgat ctttgaaaag      4500
     gccagccaga ttcgccgatt acgtttcttc gtgaaaaaag gggaga                     4546
//
ID   Gypsy-61_CQ-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   AAWU01037281;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_CQ_;
KW   Gypsy-61_CQ-I; Gypsy-61_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-179
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 502-502 (2011).
XX
DR   Genome; AAWU01037281; Positions   11322   11500.
XX
SQ   Sequence 179 BP; 57 A; 30 C; 60 G; 32 T; 0 other;
     tgtgggaact gaatacggcc ctgacgcacg cggtaggcaa cggggagaga ggggcggaag        60
     acgaaccgtc agagtgaggg ggacagttga ggcgggaata cgatcggaga ataaagatca       120
     ataattggag ctctaattga atacgtgttt tattgaacaa ctaatcgcag agtagcaca        179
//
ID   Gypsy-61_DEl-I repbase;    DNA;    INV; 5864 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_DEl-I;
KW   Gypsy-61_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5864
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7081-7081 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1192..2562
FT                 /product="Gypsy-61_DEl-I_1p"
FT                 /note="RING finger."
FT                 /translation="MSDADKVETPTGSKCKLCEKDLAISTTYKTKCGHDFH
FT                 KTCITSHSKTHRECPICGIICFQLPPSGKTIVNSPAPSGKTGENRAEVDIG
FT                 NLVTQAVQGMKNDLLTQLSQQMAQIIQANIAALVPGNPLAPPNPSTNTNWT
FT                 DQERQPVENFDQFRSESRFTPVSVESDAIYRPDRVGQILNSWKIRFNGSLD
FT                 GISVDNFIYRVEALTEQTLNSKFEILASNASLLFDGKARDFYWRYHKSCNG
FT                 EGLDWKALCQALRKQFRDTRSDVDIREAIRDRKQKEKENFDTFHDAIVSLT
FT                 DGLEVPLSEKSVAEILARNLRPEIRHELLHIQINSVGQLREICRRRESFLE
FT                 DVRRNYAYTKATPYRKQVAELLEDPLPDEAAEFSDIESEVEVGALALICWN
FT                 CHKEGHRYQDCEGKRRIFCYGCGKPNTYKPSCSKCQKNAKGNTQPRQQPCV
FT                 QRHRPTNSEAEQ"
FT   CDS           2727..5786
FT                 /product="Gypsy-61_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MRGYWAALKTINTIRYKEKDKRPYAEVSLLDRIVMGL
FT                 LDTGAAISVIGGNLAQQIIRSKITFKRGTTSACTADGTKQEVVGRIKTVVK
FT                 YNNQENELDLHLIPTLSQDLYLGIDFWTKFGLLPTEMQISEIVSDTHSLTA
FT                 KQSEDLQKVVSFFPSFSVSGLGKTSILSHSIDVGDARPVKQRHFPVSPAVE
FT                 KLLYAEVDRMLKLGVIEESDSAWSSPVVLVQKPGKVRLCLDSRKVNAVTRK
FT                 DAYPLPQIDGILGRLPKAMYISSLDLKDAYWQVPLDPQSRDKTAFTIPGKP
FT                 LYQYKVMPFGLTNASQTMTRLMDKVIPAELRNEVFVYLDDLLVVSDSFESH
FT                 LKVLEIVAGHIKAAGLTLNVEKSKFCMRSVRYLGHIVGEGVIRTDPDKISA
FT                 MTNFPLPNSLKSLRRFLGMVGWYRKFIKNFASVASPLTDLLKPKQKFAMTA
FT                 EGKQAFEELKNMLCSAPVLRSPDFNKPFFVQCDASKTGVGGVLVQKTAEGD
FT                 EYPIAFVSKKLNKTQKCYSVSEQECLAALVCIKRFRAYIEGHEFTVITDHA
FT                 SLKWLMTQTDLHSRLARWALKLQGFNFKIEHRSGKLNVVPDALSRVNEENM
FT                 AALDAGHGLLVDLESAEFKSPEYVEFVDRLKANSEKLPDIKVTDGLAYKKM
FT                 DYATGDSLHDEFIWKLWIPKGLVQEVLKNAHDHPMASHGGIHKTLERVRRY
FT                 YYWPGLVKDVKAHVLSCDTCKMTKAPNTVQRPLLGVPPESGRFFQRLYVDF
FT                 LGPYPRSKSGNIGIFIVLDHYSKFVFLKAVKKLNADVVIKYLQTDLFHTFG
FT                 VPETVISDNGSQFKSDAFQKFLRNHRVTHSFTAVYSPQANASERVNRSVIA
FT                 AIRSYVRPDQKNWDEELSSICCALRSAVHSSLGTTPYYMVFGQHFINSGST
FT                 YKLLRALGLLDDRSALFSREDSLELVRNRAVEVMKKQNEKNERLYNLRAKD
FT                 VSYDLGQEVFLKNFRQSNFQAGYNAKLGPRYLKARVRQKVGNAYYDLEDLQ
FT                 GRLMGRYHAKDMKQ"
XX
SQ   Sequence 5864 BP; 1786 A; 1086 C; 1365 G; 1627 T; 0 other;
     gtaataataa tataattcta tttatctggc gcccaacagt gtaggccaaa aatcagggtt        60
     ttagatgtgg aaaaaaatga aaaacaaaat tttactctaa gaatcccgct cacacaaaaa       120
     agaaaaaaac tttaattttc atctagttgg taatgcagta tcacagtggg ttgaaagatg       180
     tgtttacatc ccagccacgg ttgctgcggt actcatgcca aatatctcgt ctctagtctt       240
     accttaattt cgatattagg cgcataggac atatagttga atatgttgta cgcaagcgtt       300
     caactagcca cggctgatgt tgaaagtaag agtggggcaa atctattcta tttacttttt       360
     tttcgggacc taaagcaagg gttaattaga cgcttggaca tgcaggtggt aaacttatca       420
     ataagttttc acctgaccac ggataatggg ccggcgctga ggacccatct atcaaatttc       480
     atgcaatcgc catcgcgtct gtcaggtgca ttggatagac agccgaaatc ttttaaaaaa       540
     gaggtcgact ggccacggtt gacagcggga aacgtaggcc agattgcaaa acaagagaga       600
     attggaagag aaccgatcag ctctcttata gttgttgttt tagtgaatct gagtttggca       660
     atagtcgaag ggctagccac gtagctctgc ataggcagca attatattat ttttttcatc       720
     ttcttttact cacggattcc gagttaaact gctgataagg gtttggcagg gagaactcct       780
     atgtttgaag gcaaactgtt tatatatttc tatcgtgttt ttgatttttc ttacaatttt       840
     ttttagctta cttaatactt gtactctctc atttatttgt tcctttcctc tcatttctga       900
     cttagacccg agtttctctt gagtgatttt agaaattgag tgtctttaag aattgagcgt       960
     aagaaaataa aacaaatcag ctggtccgct tgttaaggtc attgaccgca ggtgtagaaa      1020
     aaaataaaag caaggaagga atgattaaat gttagggatt ttagccgaat ataattagta      1080
     actttaactt actcgttcat ttagctgtaa attaaaaaca tatattttta ggattttagg      1140
     tttcttactt ttctcattgg ttgaagatca aagaaaaaaa aaggccaaac aatgagcgat      1200
     gccgataagg tagagactcc aacggggtct aaatgcaaat tgtgcgagaa agacttggcg      1260
     atctccacaa cttacaagac gaaatgcggt catgacttcc ataagacttg cataactagt      1320
     cattcgaaga ctcatagaga atgtccgatt tgcggaatca tttgttttca actcccaccg      1380
     agtggtaaaa cgattgtcaa ttcgccagcc ccctctggga aaaccggcga aaatcgcgct      1440
     gaggtagaca tagggaattt agtgactcaa gcggtccagg ggatgaaaaa tgatttactc      1500
     actcaacttt ctcagcaaat ggctcagatt atacaagcta atattgccgc actggttcct      1560
     gggaatccct tagcaccccc aaacccaagc acaaacacca actggacgga tcaagagaga      1620
     cagccagtcg aaaattttga tcaattccgg agtgagtcca gatttactcc tgtcagcgta      1680
     gaatccgatg ccatttatag accagatagg gtgggccaaa tattaaatag ttggaaaatt      1740
     cgtttcaatg gcagtcttga tggcataagc gtggacaatt ttatatatcg agttgaggcg      1800
     ttaacagagc aaacattaaa ttcaaagttt gaaattttag ctagcaacgc tagcctattg      1860
     tttgatggta aagctcgcga tttctattgg cgatatcata aatcctgcaa tggagagggg      1920
     ctcgattgga aagctctctg ccaagctctt cgaaaacaat ttcgggatac ccgctccgat      1980
     gtcgatatcc gtgaagcaat tcgggataga aaacaaaaag agaaggaaaa ttttgatact      2040
     tttcatgatg ccattgtctc attaacggat gggttagaag tgccgctctc ggaaaagtcc      2100
     gtggcagaaa tactagctag gaatttgcgc cctgaaatac gacatgaact ccttcatatc      2160
     caaattaatt cggtggggca attgagagaa atttgtaggc gaagggaaag ttttctggag      2220
     gatgtgaggc ggaattatgc atatacaaag gcaactcctt accggaagca agttgctgaa      2280
     ctgcttgaag atccgttgcc agatgaagcc gccgaatttt ccgacatcga aagcgaagtg      2340
     gaagtgggag ctttggcttt gatttgttgg aattgccaca aagaagggca tcgttaccaa      2400
     gattgtgaag ggaagcgtag gattttctgc tatggttgtg gaaagccgaa cacttacaaa      2460
     ccttcgtgta gtaagtgcca aaaaaacgcg aaggggaaca cacagcctcg tcagcagccg      2520
     tgtgttcaac gccaccgccc gacgaattcc gaggcagaac aatagacatt gaaaatactt      2580
     ctgtagaaat agaaaatccc aaatcttcag caccaacgtc tgttcaaaaa tctttttggt      2640
     cgaagaaatt aaatttacaa ataaattcat ctaaaataca tagttgttta aaacatcaaa      2700
     agtctcaatc cagaaacgca cagcgaatga gagggtattg ggcagctttg aaaacaataa      2760
     atacgattag gtataaggag aaggataagc gtccctatgc cgaagtgagt cttttggatc      2820
     gtattgttat ggggttattg gatacggggg cagctattag tgttataggc ggaaacctgg      2880
     ctcaacaaat aataagaagt aaaattactt ttaagcgtgg aacaacttca gcatgcaccg      2940
     ccgacggaac gaagcaagaa gtcgttggtc gaataaaaac tgtagtaaag tacaacaatc      3000
     aggaaaatga attggatctc catctaattc caactctcag tcaagactta tatttaggga      3060
     ttgatttttg gactaaattt ggtttattgc caacagaaat gcagatctct gaaattgtgt      3120
     ctgacaccca tagtcttacg gcaaaacaaa gtgaagattt gcaaaaagtt gttagtttct      3180
     ttccctcgtt ttccgtttct gggttgggaa agacaagtat tctctcgcat tcgattgatg      3240
     ttggagatgc taggccagta aaacagcggc attttccagt atcgccggct gtggaaaaac      3300
     ttttatatgc cgaagtagac cgtatgctga agctgggtgt aattgaagag tcggatagtg      3360
     cttggtcgtc accggttgtg ctggttcaaa aaccagggaa ggttcgcctt tgcttagaca      3420
     gcagaaaagt aaatgcagta acaagaaaag atgcgtaccc gcttccccaa atagatggca      3480
     tcttagggcg tctcccaaaa gcaatgtata tttcaagcct tgacctcaaa gatgcttact      3540
     ggcaagtgcc tctcgatcct caatctcgcg ataagacggc gtttactata cctggaaagc      3600
     ctctttatca atataaagtc atgccgttcg gactgaccaa cgcttcacaa actatgactc      3660
     gcttgatgga caaagtcatt cctgccgaac tccgtaacga agtatttgtt tatctggacg      3720
     acttgttggt tgtctcagat agttttgagt cgcatttaaa ggtattggag atagttgcgg      3780
     ggcatataaa ggcggctggg ttgactctta acgtcgaaaa gagcaagttc tgcatgcgat      3840
     ccgtcagata tttgggtcat attgtgggag agggtgtaat aagaacggat cccgataaga      3900
     tctcagccat gacaaacttt ccgctaccaa attcattgaa aagtctgcga agatttttgg      3960
     gaatggtagg ctggtatcgg aaatttatta agaattttgc atctgtggct tccccattaa      4020
     cagatttgtt aaagccgaag cagaaatttg ccatgacggc ggaaggaaaa caggcctttg      4080
     aagagttaaa aaacatgtta tgctcggcgc cagttcttcg tagtccagac ttcaataaac      4140
     cattttttgt gcagtgcgac gctagtaaaa ctggtgtcgg aggagtttta gtgcagaaaa      4200
     cagctgaggg tgatgagtat ccgatagcgt ttgtgtcaaa aaaattaaat aaaacacaaa      4260
     aatgctactc agttagcgaa caggagtgcc tggccgcact agtctgcatt aaacgattcc      4320
     gggcatatat cgagggtcat gagttcacag ttattactga ccatgcgtcc cttaaatggc      4380
     ttatgactca aacggattta cattctcgtt tagctagatg ggctctgaaa ctgcagggat      4440
     tcaattttaa aattgagcat cgcagcggaa agttaaatgt tgttccggat gcgctgtctc      4500
     gagtaaacga ggaaaatatg gctgcgttgg atgctggaca tggattgtta gtggatttgg      4560
     aatcggcaga atttaaatct ccagaatatg tggaatttgt ggaccgacta aaagcgaaca      4620
     gcgaaaagtt gccagatata aaggttaccg atggtttggc gtacaagaaa atggattacg      4680
     ccacagggga ttcacttcac gacgagttta tttggaagtt atggatcccg aaggggttag      4740
     ttcaggaagt tttaaagaat gctcatgatc atcccatggc ttcgcacgga gggatacata      4800
     aaactttaga gcgtgttaga agatattatt attggcctgg tctggtaaag gatgtaaagg      4860
     cccatgttct ttcttgcgat acgtgtaaaa tgactaaggc tcctaataca gttcagagac      4920
     ctctgctagg ggtaccacca gagtcgggaa gattctttca gaggttatat gttgatttcc      4980
     tgggtccata tccacgttca aaaagcggta acataggcat ttttatcgtg ttagaccact      5040
     attcgaagtt tgtgttctta aaagcagtta agaaactaaa tgcggacgta gtgattaaat      5100
     atctgcaaac tgatctgttc catacgtttg gagtgccaga aacggttatt tcggataatg      5160
     ggtcacaatt taaatcagac gcgtttcaaa aatttcttcg gaaccaccgg gtaacgcatt      5220
     cattcacggc agtgtattcg ccacaagcaa atgcatcgga gcgagtaaac aggtcggtga      5280
     tagccgcaat acgatcatat gttaggcccg atcagaaaaa ttgggacgaa gagctgagca      5340
     gcatttgctg tgcattaaga tctgcggtac actcttctct gggaacgaca ccctattata      5400
     tggtatttgg ccagcatttt ataaattccg gatcgacata caagctgcta agagctttgg      5460
     ggttgctgga tgatcgttct gcgctatttt ctagagaaga ttctttagag ttagtgcgga      5520
     atagagctgt cgaagttatg aaaaagcaaa atgagaaaaa cgagcgactt tataatctgc      5580
     gggctaagga cgtttcctat gaccttgggc aagaagtatt tctaaagaat ttcaggcaaa      5640
     gcaatttcca agcaggctat aatgctaaat tgggtccgag gtatcttaag gccagggtac      5700
     gccagaaggt gggaaatgct tactatgatc tggaagactt gcagggacga ttaatgggta      5760
     gatatcatgc taaggatatg aaacagtaag gtagctgcct caagctcagt tttggtcagc      5820
     cttgtgtgtt tcacccccaa gtctgatctt gtgagggggg aatt                       5864
//
ID   Gypsy-61_DEl-LTR repbase;    DNA;    INV; 2142 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_DEl-I;
KW   Gypsy-61_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2142
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7042-7042 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 2142 BP; 644 A; 391 C; 483 G; 622 T; 2 other;
     tgtaacgctt gtggcaggca aatcgatggg cagtgccatc tatgaggcaa aaaccgaaag        60
     tgtcgccatc tagtggtcag ttgggtgccg cgattggggt aagaattttc ggagacgaag       120
     aggcaacaga gtcaattgtc atgatcccgg aaaacggaga gttattctat gggggctaac       180
     ttagcttccc gcccagagcc acgagctgct ggctttcttt cccttttcgg cagccatcga       240
     gtgcggttta gttcaattgt aagtctcgta tttaattagt tggtgaaagt ttgtttgaaa       300
     attatatctc tatagtggcc ttgtgtaaag tgacggatag aatatccaga tatatatata       360
     gcgctaaatc ctgtttatgg gtaagaaaaa atgaaatggt tgcgaagatt gcagacccaa       420
     aagtgatttt tgatttaggt ttggcgctta gtatccgata ttggatccgg ccgttgctgt       480
     agagggaaca attcctcaag tccccctaaa gaagagcgaa gtcatccgac ggaggaggga       540
     aattatcgtc gcataaaggg gtctcaaagg cctaagagtt ccctgagata attatttaat       600
     cagcttaagt cgctgggagc ggagttagga cwaagagagg gcaaaagagt caaaaagaac       660
     tcgagatgta acacctgccc aaattacaca taatatttat attccctctt catcatcttc       720
     gttatctccc gcctgcgagc gaaacttagc gaagctcagc ttggcaggca gtttttcggc       780
     gcgctgatct agkttagacg cttcggtcca cggtcggacg aaaattcaat ttaactcggc       840
     gtacaacaat gcggaataat tgttaagtcg ccgcacggaa tgtaaggcag ttcggaaagc       900
     caaagatcgg tcggagttcg ctgaaagtgg atagtttata agctatttta taagtttttt       960
     tttctctttt tttttgcggt ctaggttatg tgaaataagc cagtgagagt ggaagagtaa      1020
     gaaaaaaaga agggaaagaa gaggaaagtg cagtgatggt tagaaggcca gaaaggcttt      1080
     aataatgaat aactagaagc acgaattgct ttaggcataa tttattttaa ttttttttgg      1140
     gtggacaaac aagccaatgt gttaaaaaaa aagaaggaaa gagctgcaac aagaaaaaga      1200
     agagaaaaat tttgctgttg ttttgcacag tgggcttgca gtgtgtatat aaagaaattt      1260
     aaattttcag cctaaggtgc acttacggaa gcgctttcgt cggtggatct ccggaatgtt      1320
     ggtgagtcag atatcacgtt ttattaatat gtctttgtaa aatatatata tcaaatgaat      1380
     tactttgcgt cccaccgtac aaaacctagc agttcgaata atccataaag gagaagaaaa      1440
     aaaaaaagga gcggatttac catctctctt gtctctcaaa tttttgagtg agatgaattt      1500
     cgaaataagt aaaacaaacc actcaatttg aattcgccgt gcgctcttca ctgcaatttt      1560
     ctgccatttc cgtattctcg ctctcgaata atattttttt ggttttaatt cgtattacca      1620
     tcttactgcg aaggttaatt taataattca attgtattgc atgtatttat gttctcattt      1680
     aatatctttt caatatgttc tctaatttta agaattttat ttaggtttta aatacacttt      1740
     ataatgatta gctaaattgt atttttgttt gccttcgact aggatgagtc cccgctagaa      1800
     cccgaatcag tagaaggggc cgttcgataa tatgatggga agttttcggt aaagaacggc      1860
     caaggcaggg agggcaaatt tggttccatt agaacacccg aggaacttta ggaattccat      1920
     gagtaaaata actatccctc ttcgcgctgg cgcggattca catgatttct cctaccccat      1980
     accacttgtc gctgcacgcg aaaattcgat aaaattttag aatttactgg ctcgtgacga      2040
     aggacaagat caccacccca aatagccgac aaggagcagc tggaccatcg cgcgtgcgtc      2100
     cttatcgtca tgcaacaaca ccctagccac gtactcgtta ca                         2142
//
ID   Gypsy-61_DWil-I repbase;    DNA;    INV; 6265 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_DWil_;
KW   Gypsy-61_DWil-LTR; Gypsy-61_DWil-I.
XX
NM   Gypsy-61_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6265
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1891-1891 (2012).
XX
RN   [3]
RP   1-6265
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..1352
FT                 /product="Gypsy-61_DWil-I_1p"
FT                 /translation="MGRNWIYHMKKEDLLQTGQRIGVSINGTVEEMRKQLV
FT                 EWINNNESDPEWKEEISRLENKFTKMSKQKPGTSTAQAGENGESKEAEAFH
FT                 KINMATLTIPPFVPPRWGSEGALDKTGEKSNQRRQTIEPTKMAQNTASRTT
FT                 EYAKVAKQVREWTFKFDGNSKPLEFLEQIEWSADMYGIELDMIPRAMPELL
FT                 KDRALKWYVANNKQWPSWKEFAECFKRYFLPKGFFTKLADQVKARKQGNNE
FT                 CFKDYMVEMQTMMRPLKIPQFEQLEVILENCTPDLRIFVRPHNITNLEALM
FT                 QLAEEHEMLEQERAEFHHRNNSRRDHSSQVNHRGINNYGPQETQCRRCQDT
FT                 STQNQNRAHNNIREGRVMNPNQACRRCGEAGHWAGECNNNQLIFCWQCGKI
FT                 GTRTKECCWRSGNGRRFQPMRSEQEPSQPAPQN"
FT   CDS           1241..4510
FT                 /product="Gypsy-61_DWil-I_2p"
FT                 /translation="MRKNRNTNERMLLEIGKRASVSAYEVGAGTKPTSTSK
FT                 LIGQLIEEEDQLSAMIEVAGRKIKATIDSGATSNFMSRQMAENLRNKGDRE
FT                 TTNKQVYMADGKIRNINEQWTGYVRFGNKEMNITFLIMPDGIDALILGWNF
FT                 LRLMDTEIACGGHRIKIPTTKRMQGRITERISIMVTKKEEQAEIHTFLEHE
FT                 LMELAKIKGPSKVGIHRITMKDDIPIKQRYYPKNPKMQAEINAKVDELLKL
FT                 GCIEPSQSPYSSPIVMVKKKQTGKWRLCVDFRQINAKSIKDAYPMPRIDYI
FT                 LNQLREARFISSLDLKDGYWQIPLEDGSRPMTAFTVPGKGLFQWKVMPFGL
FT                 HSASATFQRALDQVIGPEMMPNAFAYQDDIVIVSKTIKEHKQHLQEVFRRL
FT                 KEANLRINSEKCQFFRKELKFLGHVVTEKGIATDPDKVAAIAQLKPPTCVK
FT                 ELRQYLGVASWYRRFVPGFAALTHPLHALLKKRTRWHWNEEHQEAFNAVKE
FT                 KLTNGPVLACPDFTKLFVLQTDASNMGLGAILIQNTEEGERVLSYLSRELN
FT                 SSEKSYSATEKECLAIVWAVRKLRPYLEGYHFKVVTDHMALKWLNSIDSPT
FT                 GRIARWALELQQYDFEISYRKGKLNIVADALSRQPMERCNRITDNGARLRQ
FT                 ANKECEWIQEMVTKIKQQPQKYTDYVMENSQLYRNIPHRAGQEEVVAWKMC
FT                 VPKSLRQQIIEENHTSATAGHTGSRRTIARTAARYYWPGMQRDIRIFVGKC
FT                 MTCLQFKPNQQQAAGKLLTQVPEEPWATVCADFVGPLPRSKHGNSMLLVII
FT                 DRFSKWTEIIPMRKATAENLVKAFRERILARFGAPKIVITDNGVQFTSRIF
FT                 RKMLEGWGSSHQLTAPYTPQENPTERVNRTVKTMIAQYAGDNQRNWDECWP
FT                 EITLAINTSQSQATGFTPAYVVQGREPRMPGAIYDSVTNGTGKEQTTTEEK
FT                 ANQMKELFELIRRNMETAAQDQARHYNLRRREWRPAIGSTVWAKEHHLSNA
FT                 AEGFAAKLAPKFGGPYKVQGFISPVICKLQHKVTGKSRQAHISQIKQQADD
FT                 GDTEPHTTSLDNNTKSMQNNNQQQQQPEDSHLK"
FT   CDS           4851..5465
FT                 /product="Gypsy-61_DWil-I_3p"
FT                 /translation="MHQSEVPSDRNGKCKITLVKATNEYTQIKKKKIILNM
FT                 NNFNNMHGQDEGVGRGVAPRARVARGDRHGGYGYVSEEESDDEGPVELEPV
FT                 IVISSDEDEDEDEWSMADSGYSSEESDTESVVENREQALDELLWREVDDVL
FT                 EQAEREAREARYGWHNGVMPEFNARMLRAVANDIEVQRQARELEEQQNQAA
FT                 WFNREMQDQMRWDQE"
XX
SQ   Sequence 6265 BP; 2386 A; 1274 C; 1573 G; 1031 T; 1 other;
     actggcgccc aacgtgctat actagtgaaa attaaaacga aaataaataa aaagtgtata        60
     agaaattcaa aatgggtaga aattggatct atcacatgaa gaaggaggat ctgctacaga       120
     caggccaaag aatcggagtc agcataaacg gcacggtaga agagatgaga aaacaacttg       180
     tcgaatggat aaacaacaac gaatctgatc cggaatggaa agaagagata agccgattgg       240
     aaaacaagtt cacaaaaatg tccaagcaaa aaccaggaac aagcacagca caggcaggcg       300
     agaatggtga gagcaaggag gccgaggcat tccataaaat aaacatggct actctgacga       360
     ttcccccatt cgtaccacca agatggggaa gtgaaggagc actggacaaa actggagaga       420
     agagtaacca aagaagacaa acaattgaac ccacaaaaat ggcacaaaac acagcaagca       480
     ggactaccga gtatgccaag gtggctaaac aagtaagaga gtggacgttt aagttcgatg       540
     gaaattcgaa accactagaa tttctggaac aaatagagtg gtcagcggac atgtacggca       600
     tagaactgga tatgatacca agggcgatgc cagaattgct aaaagacaga gctctaaaat       660
     ggtatgttgc gaacaataaa caatggccgt catggaaaga atttgcagaa tgcttcaaga       720
     gatacttttt gccaaaggga tttttcacca aactagccga tcaggtcaag gcacgcaaac       780
     agggcaacaa tgaatgcttt aaggactaca tggtagaaat gcagacaatg atgaggcctc       840
     taaagattcc acaatttgag caactcgaag taatccttga aaattgcaca ccagacttgc       900
     gaatatttgt tcggccacac aacatcacaa atctggaggc actgatgcaa ctagcagagg       960
     aacatgaaat gctggagcag gaaagagccg aatttcacca cagaaataac tcacgtagag      1020
     atcacagcag tcaagtaaat cacaggggga taaacaatta cggaccccaa gaaacacaat      1080
     gcagaagatg tcaggatacc agtacgcaaa accagaatcg agcacataac aacatacgag      1140
     aaggaagagt catgaatccg aaccaggcat gccggaggtg cggtgaggca ggacactggg      1200
     ccggcgagtg caacaataat caactaatct tctgctggca atgcggaaaa atcggaacac      1260
     gaacgaaaga atgctgttgg agatcgggaa acgggcgtcg gtttcagcct atgaggtcgg      1320
     agcaggaacc aagccaacca gcacctcaaa attgatagga cagctaatag aggaggagga      1380
     ccaactgtca gcaatgatag aagtagcagg tagaaagatc aaggcgacca tagactctgg      1440
     agccacaagc aacttcatga gccgacagat ggcggaaaat ctgagaaaca aaggagaccg      1500
     agagaccaca aacaagcaag tatacatggc agacgggaag atcagaaata tcaacgagca      1560
     gtggacagga tacgttcgat tcggaaacaa agaaatgaac ataacatttc tcatcatgcc      1620
     agacggaata gatgccttaa tattaggatg gaatttctta aggctaatgg acaccgaaat      1680
     agcatgcgga ggccacagga taaaaattcc aacgacaaaa aggatgcagg gcaggataac      1740
     cgaacgcata tcaatcatgg tgacaaagaa agaagagcaa gcagaaatac acacgtttct      1800
     agaacacgaa ctaatggagt tggcgaaaat caagggaccg tcaaaagtag ggatacacag      1860
     gatcacaatg aaggacgaca tcccgataaa acagcgatat tatccaaaaa accccaagat      1920
     gcaagcggag atcaatgcaa aagtcgatga gttgctgaaa ctaggatgca tagaaccatc      1980
     acaaagccca tacagttcac caatagtaat ggtaaagaaa aagcaaacgg gcaaatggag      2040
     attatgcgta gattttagac aaatcaacgc aaagtcgata aaggatgcat atccgatgcc      2100
     acgtatcgac tacatactaa atcaattgcg tgaggcaagg ttcattagca gcttggactt      2160
     aaaggacggg tattggcaga tacctctgga ggacggaagt agaccaatga cagcatttac      2220
     agtcccaggg aaaggtttat tccagtggaa ggtaatgcca ttcggtctac actcagcgtc      2280
     agcaacgttt caacgagcac tagaccaagt gattggccca gagatgatgc caaacgcgtt      2340
     tgcataccaa gacgacatag taatcgtgag caaaacaata aaagaacaca aacaacacct      2400
     gcaagaagta ttcagaaggc taaaggaggc aaacctaagg atcaactcag agaagtgcca      2460
     gttcttccga aaggagctaa agttcctggg gcacgtagtg acagaaaaag gtatagccac      2520
     ggacccagac aaagtagcag caatagccca gctaaaacca ccaacatgcg tgaaagaact      2580
     acgccaatac ctgggtgtag catcatggta cagaagattc gtaccaggat tcgcagccct      2640
     aacacatcca ctacatgcat tactaaaaaa aagaaccagg tggcactgga atgaagaaca      2700
     tcaggaagca ttcaacgcag taaaagaaaa gctaacaaat ggaccagtgt tagcatgccc      2760
     ggacttcacg aaactatttg ttcttcaaac agacgcaagc aacatgggac taggagcaat      2820
     cctcatacag aacaccgaag aaggcgaaag ggtcctatca tatctgtcca gagaactaaa      2880
     ttcgtcggag aaaagttatt cggcaaccga aaaagagtgt ctggcgatag tatgggccgt      2940
     acgaaaactg aggccatacc tggaaggata ccatttcaag gtagtgaccg atcacatggc      3000
     actgaaatgg ctgaacagca tagatagtcc cacaggcaga atagcaagat gggcattgga      3060
     actacagcag tacgactttg aaatatcata tcggaaaggc aagctgaaca tagtagcaga      3120
     cgccctgtcg aggcaaccaa tggagagatg caatcgaata acagacaacg gcgctagact      3180
     acgacaagcc aataaggagt gtgaatggat tcaggagatg gtgactaaaa tcaagcaaca      3240
     gccacagaaa tatacagact atgtgatgga aaacagccaa ctatacagaa acataccaca      3300
     cagagctgga caagaggaag tggtggcctg gaaaatgtgt gtgccaaaga gcctgcgaca      3360
     acaaataata gaagaaaacc acacgtcagc gacggccggg catacgggca gtcggcgaac      3420
     aattgctagg accgccgcaa gatactactg gccgggaatg caaagagaca tcagaatctt      3480
     cgtcgggaaa tgcatgacat gtctacaatt caaacccaat caacaacaag cagcagggaa      3540
     attactaacg caagtaccgg aggaaccatg ggcaacagta tgcgcggact tcgttggacc      3600
     attgcccaga tcaaaacacg gaaattcgat gctgctggtg attatagacc gtttctcgaa      3660
     atggacagaa atcataccca tgcgcaaggc aacggcggag aacttagtaa aggccttcag      3720
     agaaaggatt ttagcaagat tcggggcacc aaaaatagtg ataacggata atggagtcca      3780
     attcacgagc aggatcttca ggaaaatgct agaaggatgg ggaagcagcc accaattaac      3840
     agcgccatat acgcctcagg aaaacccaac cgaaagagta aatagaactg tcaaaacaat      3900
     gattgcccaa tatgcaggag acaaccaacg aaattgggac gagtgctggc cggaaattac      3960
     attggcgata aatacaagcc aatctcaagc aactggattt acgccagcat atgtggtgca      4020
     aggccgagaa cctagaatgc cgggagccat atatgacagc gtcacaaatg gcacaggaaa      4080
     ggagcagaca acaacagagg aaaaagctaa ccagatgaaa gaacttttcg aactcatcag      4140
     aaggaacatg gagactgcgg cacaagatca ggcacggcat tataacctga gacggcgcga      4200
     atggagaccg gcgattggat ctacggtatg ggcaaaggag catcacctgt caaacgcagc      4260
     agaaggattt gctgcgaaat tagcacccaa atttggaggg ccgtacaagg ttcaagggtt      4320
     catttctcca gtaatatgca agctgcaaca taaagtcacg ggaaaaagta gacaagcaca      4380
     cattagccag ataaagcaac aagcagatga tggggatacg gagccgcata caacgtcact      4440
     cgataacaac accaaatcaa tgcaaaataa taaccagcaa caacaacaac cagaggattc      4500
     gcatttaaaa taatataaag catcataaag caacaacaac atatcaacgt aaaatacaat      4560
     gagcagtaac caaaatgcaa agcatacaac aggtgtccaa caacagaaat ctattcgagc      4620
     aacaaaaaaa aaaaaaacaa aaaaaggcca caatactcgg tgaacaaaat ctgggataac      4680
     gcaaagagaa aggaggaaaa gtaacgggac caagccgaca ccaacacaaa tgaatagcta      4740
     ggcgcgctgt gatggtagta gtgagagaga ctccaataaa ataatctctt catgagtcaa      4800
     atgggcaatg catataaaac aagcggaacc aggataacgg taccggaaat atgcaccaaa      4860
     gcgaggtccc aagcgacagg aatggtaaat gcaaaatcac tctagtaaaa gctaccaacg      4920
     agtacacaca aattaaaaaa aaaaaaatca ttttaaacat gaacaatttt aacaacatgc      4980
     atggccaaga tgaaggcgta ggtcgaggtg tggcaccacg ggcacgagtg gcacgtggtg      5040
     accggcacgg tggctatggc tacgtgtccg aggaggagtc cgatgacgag ggaccggtag      5100
     agctggagcc ggtcatagtc atctcctcgg atgaagatga ggatgaggac gagtggagca      5160
     tggcagacag cggctacagc agcgaggaga gtgacactga atcggttgtg gaaaacagag      5220
     agcaggcact cgacgagctg ctgtggcgag aagtggacga tgtactggag caggcagaaa      5280
     gagaagcaag agaagcaagg tacggttggc acaatggggt tatgcccgag tttaatgcca      5340
     ggatgttaag agcagtggca aatgacatag aggtgcagcg gcaggccaga gagctcgagg      5400
     aacagcagaa ccaggcggca tggttcaacc gcgagatgca agaccagatg cgatgggacc      5460
     aggaataagg acgtggataa aaaaaaaaaa agaaagaaaa agaggacaac aagatgcgga      5520
     acgggccata ataaaaagaa tcaggaaaga aaagatgccc taatccgcca aaatacatag      5580
     aaaagattac tcagcaatcg ccaacatgac aaaagatgcc aaaaggccaa cgaaaagatg      5640
     cgacctgagt ctaaactata actaaaaaaa aaaaaaggaa aaaccaccaa tagaaaaaga      5700
     taccataaga aamaaaaaaa aagggggggc aattcgctcc agaagaaggg gggaagtgtg      5760
     aggaacatat atttgacaat aatgtcccac acaacaacac gtaaaatcag tacaatgtaa      5820
     aaagaaggat gcatgatgcc cggcaacatg ttgccaaaga tcatgtttag caacatgttg      5880
     ctgcaattaa aacacgcaac atttcgatac gacgcaacat gttcgatcgg accacatacg      5940
     accaacagca atttcgtcac agcgggaaga tgcgtgggag gcagaaagca caaaaatcaa      6000
     cggcgggaga gcataggcat gagagagcgg gccccgatgc tccaatcaca agagggcatg      6060
     gaccgattaa gagagggcat gtatggagag ctgagaatgc agcaatacag tcgcagcaca      6120
     ccgacactat gcgtgtgata attgagagca ggtaccggtg gatggaacgc gctctatgag      6180
     gctgaacaat tagagagaca aagaacagcc aaagtgaggg caaagcatgt tcaacggggg      6240
     ataatggggg gggggggggg ggggc                                            6265
//
ID   Gypsy-61_DWil-LTR repbase;    DNA;    INV; 1143 BP.
XX
AC   .
XX
DT   13-SEP-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_DWil_;
KW   Gypsy-61_DWil-LTR; Gypsy-61_DWil-I.
XX
NM   Gypsy-61_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1143
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1892-1892 (2012).
XX
RN   [3]
RP   1-1143
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 1143 BP; 426 A; 219 C; 260 G; 238 T; 0 other;
     tgtgtgcata tcaagcaaag ccaatatcgt cgatcaagtt cgatgggcaa aggggggtat        60
     gtgcaagccg aagaaagggg gaatggggta ttggggaagc cctgtctacg aggcgaataa       120
     cgtatggatg acgtagacaa atgatttgag ttaatatcga agtaaattaa ctaaatccaa       180
     attaacaaaa atcaatatga tgctcacata aagtaaacgg ccaaataaac aaaaatcaat       240
     atgttgctca cataaagtaa acggccatat agaagagcaa ccatgcaaac aaattcgaga       300
     gaacgagccc acaaggagaa ggacatggga gaaaacagcg tcgcctagca acgagagagg       360
     acatgcgacc agagcagaga actaaactag aaaaggatgg aagcccgcat agcaacagag       420
     gcgctatttg ggcagagcgg aggaacaagg acaggaattt aatgggcgcg cagcagccag       480
     aaagtggatg cggctgcgca aaggacttgt acgggacttt caccacgcat agcaacagcg       540
     tggatgaaag cgatgggccg atggaaattc accggctgta tagcggtatc acaccaagtg       600
     attctggagg cccaggaggc ctatataagg cgagcagcaa gtcaggacat tgatcaagtc       660
     gtcgagtcga gatcaagcaa tcaagtcatc gagtcctgat cagcaagcga agcaacaaat       720
     atcttttggc cttacgagta accttaagaa tatttggcgc ctagcaatct acaagtgcga       780
     gcaagtcatc gagttataag gccttacgag taaccttata gactctttaa aacaacaaca       840
     aaatctaaat acagttacaa caagtacaca gtcaatacaa gcatcaaccc gaatcagtgt       900
     aaaatcgtat ctaaacattt aaccaaaagt ctgaagcagt tatatatatg aattattgtg       960
     tcgtgattta tataaacatt taaccaaaag aaacccaaaa acatagaaat aaactccaac      1020
     atacatttat atatacataa attattgtgt cgtgatttca ctggggcaca aattaaaatt      1080
     tgttgtgccg aacctcgccc taaagattga aattatcctg aaggacgaaa aaggatcgtt      1140
     aca                                                                    1143
//
ID   Gypsy-61_LMi-I repbase;    DNA;    INV; 5541 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5541
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(72..1634,1638..3566,3570..3806,3805..4695)
FT                 /product="Gypsy-61_LMi-I_1p"
FT                 /translation="MSSPQRSAETQPHRHTAAHPQSSRVATPRELSFTPSD
FT                 SGIGFPSSSASSSGHYTARDHVHSEQCFALASRVNNNVFFSSDCVSGFLNS
FT                 DAPGVNFSPPHFDVNCASAANNDLTVADNTPPLPYPPTFSCGFVPATPPST
FT                 ASVSTTPRVAHGAQSTANPPCGLLSGSAFSLPPPAFPVMGMTAAASRTPAP
FT                 YPTVFSQQWKPVSPPLVASASSMPMGFPPQNRHVRFAQGTVPVPQTVNDAA
FT                 PGTQSELNATNSAIQYMGTPELTPRPTARSDLSAPITGHLSAPGKPPKLPA
FT                 FVRDSPKAWFAVVDTIFDHYSILDDNTKFVCLITNLPDELSLISDIIASAP
FT                 KSGKYCFAKQLIIERLSRSPKDVMHHIVYETHLDNRSPSELWHYLRAQVDD
FT                 TFIADSALLSLWLLKLPTDLRLQLLSHLSDPINTLLRLADESHKIIRHRQL
FT                 AFSHASSTSGVAVSATAVGSAPPPPLPWERSRQPNCSCCYAGAAIYRXRRC
FT                 TTCAAPLHHPLGGSTAAGGPPRPVAQRNDAFARASCLPTLLVSRYIRRCGA
FT                 ALSSPVQPPKRGGREPTGASSRRTVIHSSRLQTFPESSVTDLQSHRLYIRD
FT                 YNHNVSFLIDTGADVSIIPPSAAAAPLSDILITLYXANSSPIRVLGSTKWT
FT                 VRLGEDLSFPWTFYVAEXDTPTLDMDFLLHYGLVLDFKTRQLSHVSGAVIA
FT                 CEPMAYGSKAINNATCLSRMQAKLRSEFERYSSALIELRQETSRLRRENAE
FT                 LRRRIDQRVAELAAARAELRHLSALHAAAVVPATVQPQLPSQVSDIKLINQ
FT                 CVSVQATPTRAFTCVVTSGTVHKINTTEGPPVHHKARRLNPAKHIAAKDIV
FT                 KELLDNGVLRPSDSNWSSPIHLVLKKDGSFRMCGDYRALNARTIIDNYPIP
FT                 HIQDFTQLLHGAKFFSVIDCKKAYHQIPMYPPDIPKTAIITPFGLFEYCTM
FT                 PYGLKNAAQTWQRFIDSVLFDFPFAYAYLDDILIFSSSEEDXAEHVRRVRD
FT                 ALDAVSVIINDDKSQLAKDSVAFLGHTVSGEGVAPISSRVAIILGLPPPQD
FT                 YGELRRFLGMLNFYRRHIPHAASIQAPLTDALAGKDTSGSRTLVWTEELNK
FT                 AFENLKTALSRAITLSHPAPDAELSITADASDFAVGAVLQQHVGGEPQPLK
FT                 FFSKNPPHNVNGRRLTENSSLCTPRLNTSARTSKAGRLQFIPNTSLWQTPS
FT                 TTRHRTSLPVGSATRTSFVSSQATSATSMEPITRSQIYNVAADYFSXVNXV
FT                 NYKIDYDAIARQQVSDPDIKKLLDDNSTSLRFELRTVHSLPTKVICDVSTG
FT                 KPRPLIPAALRRQTFDAIHSLAHPSIHATTKMLTDRFVWSDIKRDCKTWCR
FT                 TCLPCQRAKVSRHNTPVFGKFTTXSGRFRRVHVXIVGPLPESEGYRYILTI
FT                 IDRYSRWVEAXPLKDITADSVAAXFISGWISQYGAPATITTDQGRQFESRI
FT                 FDALCSLCGSECVHTTAYHPQXNGLVERWHRSLKASLMCHEQSWSEALXXV
FT                 LLGIQTALKEDLGASLAELLYGNP"
XX
SQ   Sequence 5541 BP; 1202 A; 1790 C; 1256 G; 1276 T; 17 other;
     cattggtgac cccgataagt tcggtaaccg accgttttcg aaagtattcg cgactcctgs        60
     gccggttcgc catgtcgtcg ccacagcgat ctgcagaaac acagcctcat cgccacactg       120
     ctgcacatcc tcagtcatcc cgagttgcta cgcctcgcga actatccttc acgccctcgg       180
     actcaggaat tggatttcca tcttcatccg cttcgtcgag cggccactac acagcacgtg       240
     atcatgtgca tagtgaacag tgttttgctc tcgcgagcag ggtaaataac aatgtgtttt       300
     tctcgtcaga ctgtgtttcg ggatttttga acagtgacgc accgggtgtg aacttttctc       360
     ctccccattt tgacgtaaac tgtgccagtg cagctaacaa tgacttgaca gtggccgaca       420
     atactccgcc attaccgtac ccgccgacct tttcgtgtgg tttcgtaccg gccacacctc       480
     cgtcaaccgc gtcggtttct accacgccgc gagtagccca tggtgctcag tctactgcca       540
     acccaccatg cggtctactt tctgggtccg cgttctcact cccgccgccc gcatttccgg       600
     tcatgggtat gaccgctgcc gcgtcgcgca cacccgcgcc ttatccgacg gtgttcagtc       660
     agcagtggaa accagtttcc cctccgcttg tggcctctgc ttcttcgatg ccgatgggtt       720
     ttccgccgca gaaccgtcat gtgcgttttg cgcaggggac tgttccggtt ccacagactg       780
     tcaatgacgc cgcgcctggc acacaatcgg agctgaatgc tacaaactcc gctattcagt       840
     acatgggcac acctgaattg acaccacgac ctacagcccg cagcgatctg agtgcgccga       900
     ttacaggtca tctttcggca ccgggcaaac caccgaagct acctgcattt gtgcgtgaca       960
     gcccaaaagc ttggttcgcg gttgtcgaca ctattttcga ccactactct attctggatg      1020
     acaacactaa attcgtgtgc ctaatcacca acctgcctga cgagctttct ctgataagtg      1080
     atataatcgc ctcggcccca aagtctggga agtactgctt cgcaaaacag ctcatcatcg      1140
     agcgactttc tcgatcacct aaagacgtga tgcatcatat cgtctacgag acgcatctgg      1200
     acaaccgctc accttccgag ctttggcact accttcgagc ccaggttgat gacactttca      1260
     ttgctgacag tgcgctgttg tcgctctggc tacttaaact tccgacggac cttcgtctgc      1320
     aactgctctc gcacctgtca gaccctatta acaccctact gcgccttgcc gacgagtcac      1380
     acaagatcat tcgccatcga cagctcgcgt tctcccacgc atcttctaca tcaggagtcg      1440
     cagtttctgc cacagcagtt ggtagcgccc cacccccacc actcccgtgg gagaggtcgc      1500
     gccagccgaa ctgcagttgt tgctatgcag gmgccgccat ctatcggcmg cgccgctgca      1560
     ctacctgcgc tgcccccctc caccacccac tcggaggcag cacagcggca ggtggccctc      1620
     cccggcctgt cgcctagcaa cggaacgacg ccttcgctcg cgccagctgt ttacccactc      1680
     tgttggtatc acgctacatt cggcgatgcg gcgcagcgct gtcgtccccc gtgcaaccac      1740
     ccaaacgcgg cgggcgggag cctacaggcg cgtcctctcg ccgaacagta attcattcaa      1800
     gccgcctgca aactttccct gaatcttctg ttaccgactt gcagtctcat cgactctaca      1860
     ttcgcgacta taaccacaac gtcagcttcc ttattgacac cggcgccgac gtcagcatca      1920
     tcccgccgtc cgctgccgca gcacctttat cagacatcct cattactctt tacsccgcaa      1980
     acagttcacc cattagagtc ttgggttcaa ccaagtggac cgtgcgcctc ggcgaggatt      2040
     tgtcgtttcc gtggacgttc tacgtggcgg agktggacac acccacactc gacatggact      2100
     tcctactgca ttacggcttg gtactggact tcaagacccg acaactctca cacgtttctg      2160
     gtgccgtcat cgcgtgcgaa cctatggcat acggatcgaa agcaattaat aacgccacat      2220
     gtctgtccag gatgcaggct aagttacgct cagagttcga gcgctattct tctgctctca      2280
     tcgagctacg tcaagaaaca tcgcgtcttc gccgagaaaa tgcagagcta cgacgccgca      2340
     tagatcaacg tgtcgcagaa ctcgccgcag cccgcgccga actacgacac ctctcagcac      2400
     tacacgccgc cgctgtggtt cctgctactg tacaacccca gctaccatct caggttagtg      2460
     acatcaaact tataaatcag tgtgtaagtg tacaagccac gcccacccgc gcgttcacgt      2520
     gcgtcgttac tagtggaacc gtccacaaaa taaacactac tgagggacct cctgtgcatc      2580
     acaaggctcg tagactaaat ccggcgaaac acatcgcagc caaggacatc gtgaaagaac      2640
     tcttagacaa cggtgtttta cgtccttctg atagcaattg gtcgtcgccg attcaccttg      2700
     tacttaagaa agacggttct ttcaggatgt gtggggatta tagggctcta aatgctagga      2760
     caatcataga caattacccc attcctcaca tccaggactt tacacagtta ctacatggtg      2820
     ccaaattttt ttctgtgatc gattgcaaga aagcgtacca tcaaattcct atgtacccgc      2880
     ctgacattcc taagaccgct attatcacgc cgttcggcct gtttgaatat tgtactatgc      2940
     cgtacggcct caagaacgcc gctcagacat ggcagagatt catagactca gtcctcttcg      3000
     atttcccatt cgcctatgcc tatctcgacg acattcttat cttctcgtcg tcggaagagg      3060
     acmacgcaga acatgtccgc cgggtccgcg atgctttgga cgcagtttcg gttataatta      3120
     acgacgacaa atcacagctc gccaaagact cagtagcttt cttaggccat actgtatctg      3180
     gtgaaggtgt tgcgccgata tcgtcgcgcg tggcaattat cctcggcttg ccacccccgc      3240
     aagactatgg tgaattacgc cggtttttag gtatgcttaa tttctacagg cgccacattc      3300
     cccacgctgc gtcaattcag gcacctctca cggacgcttt agctggcaaa gatacctctg      3360
     gctcacgcac gcttgtgtgg acggaagaac ttaacaaagc atttgagaac ttgaaaaccg      3420
     ccctgtcgcg ggccatcact ctctcgcacc ccgcgccaga tgcagaatta tccatcaccg      3480
     cagacgcaag tgacttcgca gtcggcgctg tgcttcaaca acatgtcggc ggtgagccac      3540
     aaccactcaa attcttctct aaaaactgac ctccgcacaa cgtaaatggt cggcgtttga      3600
     ccgagaactc ttcgctttgt acgccacggt taaacacttc cgcgaggacg tcgaaggccg      3660
     gccgtttaca atttataccg aacacaagcc tctggcagac gccttccaca acccgtcacc      3720
     ggacatccct ccccgtcggt tctgccacac ggacctcatt tgtcagttct caagctacgt      3780
     ccgctacatc catggagccg ataacgtagt caaatttata acgtagctgc ggattatttt      3840
     tctckggtga acascgtcaa ttataagata gactacgacg caatagcgag acaacaagtg      3900
     tcggatcctg acattaaaaa gcttctggac gacaattcga cctcgctccg cttcgagctt      3960
     cgtacggtcc atagcctccc aacgaaagtc atctgtgacg tctccaccgg gaagccacgc      4020
     cctttgattc ctgccgcctt gcgtcggcaa acgtttgacg cgattcattc actggcgcac      4080
     cccagcattc acgctacaac taagatgcta acagaccgct tcgtctggtc cgatatcaag      4140
     cgcgactgca agacatggtg tagaacatgc ctaccttgtc aacgtgcgaa agtcagtcgc      4200
     cacaacacgc ccgttttcgg caaattcacc acgcsgtcag gacggtttcg acgtgttcat      4260
     gtggwcatcg tcggccctct tcctgaatct gaaggttacc gatacatatt gactatcatc      4320
     gatcgctaca gccgttgggt cgaggctats cctttgaagg acattactgc cgactcagtc      4380
     gccgccgmct ttatctcagg atggatctcc cagtatggag cacctgcaac aatcacaacc      4440
     gaccagggcc ggcagtttga gtcacgcatt tttgacgccc tctgttccct ctgcggctca      4500
     gagtgcgtsc atacaacagc ataccaccct caawctaatg gtctggtcga acggtggcac      4560
     cgctctttga aggcgtcgct catgtgtcac gaacaatctt ggagtgaagc attacmgtgs      4620
     gtcctgctgg gcatccagac kgcgttaaaa gaggacttag gcgcgtcgct ggctgaactt      4680
     ctgtatggga acccttagtg ctcccagctg aatttgtgga cccactcgaa aaactggatg      4740
     acgcgcctgc caccctttga cgagtcccga cacaatacgg gctgtcctcc accaccccgc      4800
     gccatcactg tactcaacac ccctacgaac accctggact acgtacctcc gattatgtga      4860
     tgctgcacga cgattccatc cagccgtctc tttctccccc gtattccgga ccctaccgct      4920
     gctaagtcgc ggcccacaga cgtttgacat ttctgtgtcg ggcaacgcca gacagtttcc      4980
     atctgccgac tgaagccagc ctgggtcctg gatgaaacgg ccaccgacga cgtatcaatg      5040
     ccccaagctc acgtcgagcg tactcctcag ttttcacccg cctttctcac ccagccccca      5100
     aggagcgttg ctgttcgact ttcccgatgt tctaccgccc ctatcgaaca ttcacgcatg      5160
     accacggaga gcaagaaccc acgactccat ccgagttgtc gacgaattcg cagcccgccc      5220
     tcacctgcga cacgcagcgc gctacttcta ctgtttctcg acaacaggtg caccgctcgc      5280
     gccgcgaccg acgccccctg cgctggctgg ctgactacga atgccacgag gccacgcccc      5340
     ctctcaccga ggattccgcc tcgccggcct ccctgcagcc gaccaccaca cacccctcgc      5400
     cgccgctgcg cagtcagtca cgtgccgacc gccctgttcg tcggcccctc tacctccgag      5460
     actacgtggc gttggcgtct tcggcgtccc caacgctgct ttccgcaccc cgctccgctc      5520
     tccagggggg agggggggct c                                                5541
//
ID   Gypsy-61_LMi-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-201
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 201 BP; 53 A; 45 C; 47 G; 56 T; 0 other;
     tgtggcagag tgacaccttt cccgactagc ctctttggac gagcgcacta ggcggatgga        60
     tacaaaacat tcaacagtgc tttgtgttac gcgaacgagg acgattgttt gtaataactc       120
     tgtgtgttca cctcgggtct aatcgaaata aatgcagcaa ttaaagttgg gttattattc       180
     actcgccgtg atcactaccc a                                                 201
//
ID   Gypsy-61_SpEx-I repbase;    DNA;    INV; 4352 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4352
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4127-4127 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..1157
FT                 /product="Gypsy-61_SpEx-I_1p"
FT                 /translation="MEHARPPAELSLDXGPATRSDAWHKWRKQFEVFLKAS
FT                 GVSKEPKEVQASLLVNLIGSAGYEAFTTFTYEEGESEDDIYCVLKKFDKYF
FT                 GTKPNITVRRFKFFSRNQEEGENIDQYVTALRVLSQQCEFSELHESLLRDR
FT                 IVCGIVNNTVRDRLLRTDELSLSKAIQICQAAEMSKEESKCIDGASEGVQV
FT                 DAVQGGRSARGGRRAGGWRGAGGARAARAQHVACERCGSARCLGGERCPAC
FT                 DAKCYVCEKKGHFSRVCKHKKSIRKVLNLSVETVNSDSDDEKQRYYVNILD
FT                 DKKKQCKSPIEWTEVIECQGKXLLLKIDTGSMINVISKVNYIKLGLSITDL
FT                 KPFTKRVYSFTGNQLPWLX"
FT   CDS           1081..4116
FT                 /product="Gypsy-61_SpEx-I_2p"
FT                 /translation="GYLLQTLNRLQNVYIRLPAINYLGYXSYXLSFVVVDL
FT                 FCQSVLGLEGCIALGLISQINTINLDNYNELFEGLGKLPGKYSIIIDKNVQ
FT                 PVICPTRKIPLGLKDKLKEELCRMEDLGVVRKVTHPTSWVNAIVLVAKKDG
FT                 SIRVCLDPRPLNRAVRRAHYSLPTVLELAARLRGATVFSVLDARCGFWMVQ
FT                 IDDASADLCTFGTPFGRYQFLRLPYGINCAPEVFHAKLRQHLENLEGVESF
FT                 IDDIIVWGCSKDEHDQRLECLLRRAKDIGIKFNREKCKFSVSEITYLGHKF
FT                 DANGMRADDSKVKAIMDMPYPTDRKALERFLGMVNYLSKFIPNYSESVNVL
FT                 RSLLKKDSEWSWESQHSEAVDRLKAKLGSAPVLALYSDSAPLVVSVDASSV
FT                 ALGAVLLQNDRPVEFASLTLTDTQTRYAQIEKEMLAIVFGVERFKQYIYGR
FT                 TDVTVNTDHKPLEALFTKPLDSVPARLQRMMLRVQGFDFKVVYTPGKNMYI
FT                 ADTLSRAPLKEKMHDQVSTEVEIQTCFMLEHVPFSRPRLEAIQKETDLDSD
FT                 CRWLVKYITKGWPKNRRDVNERVNAFWPYHEQMHYVDGIIFKGDLVFIPRS
FT                 LREDMLSRVHEGHLGIERCKRRAREVMFWPGMCDDVERVVRTCAACALHAP
FT                 RPRRQPLLQHSVPALPWHKLASDTFEYKRKNYIVLVDYFSNYVEVGQLTSI
FT                 SSKQVISFMKEQFARHGIPAVLVSDNGPAYSSQEFKKFMREWEIEHVTSSP
FT                 HYPQSNGKSERTVQTVKNMLKKCVDSGQDFNLALLNFRTTPRHDLDSPAQI
FT                 LMGRRLKTRLPVSAKLLTERVDNEKNYKTIMSKREQIKINYDKTANTLKRL
FT                 SQGDRATLVCNGDRKPVTVVAQAPQPRSYIVEDERGGRYRRTRSQLITRTA
FT                 SSAVTRETARQPPKSEFSSRSPSIISMTGFRRRRRKPKPIGSQNAAAXTQA
FT                 QGSPASSESVMLDVSGDYESPVSTRDQSCTSSSHEVPIERSKERTARMLTH
FT                 RFHDNE"
XX
SQ   Sequence 4352 BP; 1349 A; 758 C; 1106 G; 1128 T; 11 other;
     tggtgacagc ggtgggatct ttttaacatt aattacgggt taaaaagatt tttagcaata        60
     gaataataaa tatggagcac gctcgtcctc cagcggaatt atcgctcgac gstggtccgg       120
     caacgcggtc cgacgcgtgg cataaatggc ggaaacagtt cgaggttttc cttaaagcat       180
     ctggagtgag caaagagccc aaggaagttc aggctagttt gttggttaac ctcatcggat       240
     cagccggtta tgaggctttt acaactttta cgtacgaaga aggtgaaagt gaagacgaca       300
     tttattgcgt attaaagaag ttcgacaaat atttcggcac gaaaccaaat atcacagtga       360
     gacgktttaa attcttttca cgcaatcaag aagagggtga aaacatcgat caatatgtaa       420
     ccgcattgag ggtattgagc cagcagtgcg agttcagtga attgcacgag agcctgttgc       480
     gtgataggat tgtgtgtggt attgtaaaca atacggtaag ggatcgactt cttcgcacag       540
     acgagttgtc gttatcaaaa gcgatacaaa tctgtcaggc ggcagagatg tccaaggagg       600
     agagcaagtg catcgacggt gcatctgagg gggtgcaagt ggatgctgtg caaggcggcc       660
     gcagcgcacg aggcgggcgg cgcgctggag gatggcgcgg agccggcgga gcgcgagcag       720
     cgcgtgcgca gcatgtcgct tgtgagcgat gcggcagcgc gcggtgtctc ggcggcgagc       780
     ggtgtccggc gtgtgacgca aagtgttatg tgtgtgaaaa gaaaggtcat ttttcgcgag       840
     tgtgcaagca taaaaaatcg attcgcaagg tgttaaatct cagtgtagaa accgtaaata       900
     gtgatagtga cgatgagaaa caaaggtatt atgtaaacat cttagatgat aagaaaaaac       960
     aatgtaagtc gccaatagaa tggacagaag ttatagaatg tcaaggtaaa aamcttttat      1020
     taaaaataga cactggatca atgattaatg ttatctctaa agtgaattat attaaattag      1080
     ggttatctat tacagacctt aaaccgttta caaaacgtgt atattcgttt accggcaatc      1140
     aattaccttg gttatswtag ttattwgtta tcatttgttg ttgttgattt gttttgtcaa      1200
     agtgtactcg gtttagaggg atgtattgcg ttaggattaa taagtcaaat aaatacaatt      1260
     aatttagata actataatga attgtttgaa gggttgggaa aattacctgg caaatatagt      1320
     ataataatag ataaaaacgt acaaccagtt atatgtccaa ctaggaaaat tccattgggg      1380
     cttaaggata aattaaagga ggaattgtgt agaatggaag atttgggtgt agttaggaag      1440
     gtcactcatc caacctcatg ggtaaatgca atagttttag tcgcgaaaaa ggatggcagt      1500
     atccgtgttt gtttagatcc gcgaccatta aaccgtgcgg tgcgacgcgc gcactactcg      1560
     ctcccgacgg tgctggagct ggccgcgcgc ttgcgtggtg ctactgtgtt tagtgtgtta      1620
     gatgcgcgct gtggtttctg gatggttcaa atagacgatg ccagcgctga tctatgtacg      1680
     tttggcacac cattcggtcg ataccaattt ctgcgtttac catacggtat aaactgtgca      1740
     ccagaggtat tccatgcgaa gcttaggcag catttagaaa atttagaagg agttgaatct      1800
     tttatcgatg acataattgt atggggctgt agtaaagacg agcacgacca gagattagag      1860
     tgtcttctcc ggcgtgctaa agatatcggc ataaaattta atcgcgaaaa atgcaagttt      1920
     agtgtatcgg aaattactta cttaggtcac aagtttgacg cgaatggtat gcgggcagac      1980
     gactcgaaag taaaggctat aatggatatg ccctatccta ctgataggaa ggctctcgag      2040
     aggtttttag gtatggtaaa ttatttatct aaatttatac ctaattactc tgagagtgta      2100
     aatgtgttaa ggtcgttatt gaagaaagat tcggagtggt cttgggaatc tcaacattca      2160
     gaagcagtag ataggctaaa ggcaaagctg ggtagtgcac cggtgctagc actgtacagt      2220
     gacagtgcgc cgttggtggt atcagtggac gcgtctagcg ttgcgctggg cgctgtacta      2280
     ctgcaaaatg atcgtccggt ggagtttgca tcgcttacac tcaccgacac tcagactagg      2340
     tacgctcaga tagaaaaaga aatgctggct attgtgtttg gtgttgaacg attcaagcag      2400
     tatatttatg gcagaactga tgtcaccgta aacaccgacc acaagccact agaagcttta      2460
     tttaccaaac ccctggattc ggtaccagct agactacaaa gaatgatgtt gagggtgcaa      2520
     ggattcgact tcaaagtagt atatacgccg ggcaaaaata tgtatatagc agacacatta      2580
     tcgagggcac ctttgaagga aaaaatgcat gatcaagtat ccacagaagt ggagatacaa      2640
     acttgtttta tgttagaaca tgtacctttt agccgaccac gattagaggc cattcaaaaa      2700
     gaaacggatt tagatagtga ctgtcgatgg ttggttaaat acataacaaa aggctggcct      2760
     aaaaataggc gcgatgttaa tgagcgagtg aacgctttct ggccatatca tgaacaaatg      2820
     cattacgtag acggaatcat ttttaagggc gatttagtgt tcattcctcg ttctttacgg      2880
     gaagacatgt tgtcacgagt ccacgaagga catttaggta tagaaaggtg taaaaggcgc      2940
     gcgcgcgagg taatgttttg gccgggaatg tgcgatgatg tcgagcgcgt cgtacgcaca      3000
     tgtgcagcct gcgcactgca tgcgcctcgc ccgcgacgtc aaccgcttct gcagcatagc      3060
     gtgcctgcac tgccatggca caagctagca tcggatactt tcgagtataa aagaaagaat      3120
     tacattgttt tagttgatta cttttcaaac tatgttgagg taggacagtt aacgagcata      3180
     agttcgaagc aagtaatttc ttttatgaaa gagcagtttg caaggcatgg tataccagca      3240
     gtgttagtca gtgacaacgg tccggcttac agctcacaag aatttaaaaa gtttatgcgc      3300
     gagtgggaaa tagagcatgt aacgtcatca ccgcattacc cacaatcaaa cgggaaaagc      3360
     gagagaacag tgcaaacagt taaaaatatg ttaaagaagt gtgtagactc ggggcaagat      3420
     ttcaatttag cattgttaaa ttttagaact acgccgcggc atgacttgga ctctcctgca      3480
     cagattttaa tgggtagaag gctaaaaact agattaccgg tcagtgctaa actactaaca      3540
     gagagggtag ataatgagaa aaattataaa actattatgt caaagaggga acaaatcaaa      3600
     ataaattacg ataaaacggc aaacaccctt aagcgactgt ctcaaggaga tagggcaact      3660
     ttagtatgca atggcgatag gaaaccggtg actgtagtgg cacaagcacc tcaaccgcgc      3720
     tcgtacatcg tagaagacga acgtggtgga cggtatcggc gaactcgaag tcagttaata      3780
     acgcgtacgg cctcgtcagc agtaactaga gaaactgcga gacaaccacc gaagagtgaa      3840
     tttagtagca ggtcgccaag tataatttca atgacagggt ttcgtaggcg tagacgaaaa      3900
     ccaaaaccaa tagggtcgca aaacgccgca gccgmtactc aggcgcaggg aagcccagcg      3960
     agcagcgagt cggtaatgct cgatgttagc ggtgattatg aaagtccagt tagtactcga      4020
     gaccagtctt gtacgtcgtc atctcacgag gtacctattg aaaggtctaa agaaagaact      4080
     gcacggatgc tgactcatcg ttttcatgat aatgagtaga tgtaggtata gaaatgagaa      4140
     aagttamakt ttgttgtatw amcaggaagg aattaagcaa ttagattata agattagata      4200
     agaaaaattg tgttattgca taagttagaa ataagcatag gttagtaact gtaaaactat      4260
     aagtattgtg taattgcact ttattataat gtaacattaa ttataagtag ttgataataa      4320
     tcattgggca ttgcttttcg gaaaggaaga ga                                    4352
//
ID   Gypsy-61_SpEx-LTR repbase;    DNA;    INV; 102 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-102
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4190-4190 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 102 BP; 28 A; 13 C; 23 G; 36 T; 2 other;
     tgtagtatat tagtgacggt atgtcaatat tccgtkataw tcgtatgtga gggtgtatga        60
     ataaaagtca gtgtttaacc aacttgcgtg cgtttcatta ca                          102
//
ID   Gypsy-61_TrVa-I repbase;    DNA;    INV; 9534 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-9534
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 306-306 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..7312
FT                 /product="Gypsy-61_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNQTNIEENVNTIRELRSRNIVEQISNPPAVNNHQAP
FT                 ANSSAVVVQIDENTSAENLARDFNIPQNVTVNTNSQNVNNVNNSPQNDSIN
FT                 NRSFENHGETVQRSFENATVNYQPHNQEIDTIPPNVNNTPQYHNNRPQNLN
FT                 SIPQNVNNVPQNHSNMPXNFNNIPQNVNNVNNNFSQNRNVNNPNLENQGGN
FT                 FQRSFENVAANYQQNTHETNQQFSGFSQAFDNQHQRLDAAVSGMQQNSSVN
FT                 NQPSNLRSGHFSSDINSHNFSVNNQHSNLRSGYFXSDNNSXNSIVDNPHTN
FT                 LRSGHFNRDNNSQFREESSPRFTSFMDKNQQSPFYIRYPKIEFPKVDRAQP
FT                 REFLLQFEQAANFAQLNDQQKIELFLFGLEQDGDLWFRNNRTYLRNVKKWT
FT                 QLKEEFLEEFERSVNLSFSWMQFQNRKQLVNEEPSVYIEHKIYLANNIRHK
FT                 LSEEELIDCIIRGFSPLMARQLFMMDNPDVKTLKKNVKRIENSFMIDNTAN
FT                 DNQHHKLNSIQNHPPLSDFSSKCEEILMQKMKEMGLNPDVKNVNKGNINVV
FT                 SENEIKGNSKAYYIQRESRPRNRDYSRDRQTSYQQYHQDSVNRSHSRDKKD
FT                 YRHDRNSSRDSNHRSDKDYRSNRNYSRDRDYSRDRNYDHGKDYRYDRNSSR
FT                 DNHYKHDKDYRTSRNYSRDRDYSKERKSSYQQYDRDNRNRSNSPQSKDYGR
FT                 NRNHSQGKDYRHDRNSSRDSHRRSDKDYRSNQNYSRDRDYSRDRNHDQGKD
FT                 YAESKNWRKRSPTPGFRQSRNRSRTPSGKIICNYCEKPGHYERNCDKKQRE
FT                 RTNQNSTSKQNLKWDAEILSVGISSGLKFKVWIRNKEITALLDSGASMSLI
FT                 SHDIAEKVTPLKRKINIVTANNEVIKVIGNTQLTVKLNEHDEITIKCLVVK
FT                 EANTKLLLGNDFSNYHGVKINFSTNKITLKSDAGNEVAVNMEIKNQKTVLS
FT                 LLPEREFKATPLKLSTIINRKRGITCVDTGACANIIDSSYVQQKDIKPTKR
FT                 WRLXTANNSTLKIIGETQFDLEIQQIKYPVKALVAEKLSYPLLIGNPFNQN
FT                 FVEKIDFQTSEITMKIPYTNKKLKVHFSSKEMEEKIFDNNYPETSDKSKNT
FT                 DEEEFQKLASICEINAEEEEAKESIIVIKQITIPAKSEKIVHCVVKNFKNE
FT                 REKIITLTTGAEKAKKLTTTHDLITVTKFLQLKIKNTSCKRVKLFKNYVLG
FT                 TLNEPNHKPESVECFEIRSSNLSQDRENELHINEKLSSVQKKQLTDLIGRY
FT                 QDIFLWSDVKFEAGKANYPAQKLELSDKTPIHRAPYRTGMQQRALIDEYIQ
FT                 KMLDTKVIKRSTSPYSSPLILVKKKEKGKYRPCIDFRKLNEKLKEETFPMP
FT                 RIDDLLASLNDTAIYSTFDLESGFFQAKLHPDSGPMTAFSTYNNHYEFTCL
FT                 PQGLSPSPIRFSKMITEIFSRLLYHTLLVYMDDILVFSKTWEDHVKKLEEF
FT                 FKLVRAANLKLKPGKSKIGYYETKVLGFKINSKGIKPDDEKIKVIKEFPTP
FT                 KKQKDIRSFLAMAGFYRAHIPHFAEISLPLIHLTKQKIPFEWDSECQKSFD
FT                 TLKKALMSEPLLTHYDPENGQLELHTDASNYAISAVLNQVKYGSIQPIGYM
FT                 SRVLSSNESNWSTCEKELLAITFGIEKFRPFLFNTKFTIVTDNQALVYIKK
FT                 IESPTTRLTKLALKLSEFDYKIRHTRGKDNTVADCLSRYPSTSEKISSIEI
FT                 AEEEEEEEEKEEEEYDEEEEGQLIEEEEEEEKEEQLEEQQQQLEEEEKQEE
FT                 EKKENENNLSDKKVKLEQRKDDKLKIIFETLQNPRLATTKEIKTARSFYIK
FT                 YGILWRKTNSENDVLVIPTQLINEVLYQIHDCPFAGGHQGIFKSLKKAKER
FT                 FYWDGMDKCIRNYVLSCETCQFVKKIKHHEKYGKMTSHKISGSVFAKISID
FT                 CVGPLKPAKAEDGTIKRFIIGAIDYFTKFLYLKAVPNIQAKTVASFLTELF
FT                 NLFGVAENIVMDNGRNLKSNYVQELLDQLGVKRTFTSAYSPKSNGQSERMW
FT                 QTLGNILRSYTSSNQKDWPLYIDSIMSSHNSTVQSSTKMTPYFMLTGQNFR
FT                 LPIDAALRPNSDNMEIIDRLHKLDAVREEALENIKLAQEIQKSAHDEDKKD
FT                 PPFKIGDLVLIHQPARTKELSEKLRIKYKGPFKIIEQLSPSRFRIKTNKKG
FT                 KEGEIIQADRLKKYVERMG"
FT   CDS           8124..8720
FT                 /product="Gypsy-61_TrVa-I_2p"
FT                 /translation="MSKNKITIHEYRKRQEEYNKSVIYEENIFNMLSLWSD
FT                 INEEPEXIIESAQCERINXLXVDLNPIEDIPTVDIVPSXIIENQSSSSISS
FT                 QLELTEPSTSDWWHEKLXXVDKPSTSTARTLRNHQLEVWXTSNKETICQHL
FT                 TTESTATAAANITPSTSTKEPPIDDNADKKKRKGKGCRQRQLMKRREIRRK
FT                 QKTYDGSYL"
XX
SQ   Sequence 9534 BP; 3590 A; 1737 C; 1658 G; 2529 T; 20 other;
     tggtggaggc aagccgagct ttttctcagg cagaaaaaga agtgaccagt accgtttttt        60
     gtacccctct tggtttttga attttttttt accgtttttt tttgacaaga aaaatcgaag       120
     aaacactgat gttgtttaat taattttttt taccgttttt tttgacaaga aaaatcgaag       180
     aaacactgat gttgtttaat taattttttt taccgttttt tttacaagaa aaagcgaaga       240
     aacactgatg ttgtttatta gtttttttta ctkttttttt ttacaagaaa aagcaaagaa       300
     acactgatgt tttttaatcg tcgtcttttt tttttactgt tttttttaca agaaaaagca       360
     aagaaacact gatgttgttt aatcgtcgtt tttaattttt tttactgttt tttttttctt       420
     gacaaaaaag caaagaaaca ctgatgttgt ttaaccgtcg tttttaattt tttttactgt       480
     ttttttttac aagaaaaagc aaagaaacac agttaatttt aactctggtt ttccgtaaca       540
     actatagtga ttttttttac tgttttttta aagcaaaaaa agcaaggaag catcattttt       600
     tttttctcgt actcagccgg ttttacgtat ccgtattgat ttcgtttacc gttcgtttgt       660
     ttttcacaag aagaaaattt tgttttcttt tgacctcttg atttgtttaa atttcatcat       720
     gaatcaaaca aatatagagg aaaatgtaaa taccattagg gaattaagat ctaggaacat       780
     tgtggaacaa ataagtaacc ctcctgctgt aaataatcac caggcaccag ccaacagtag       840
     tgcagtcgtt gtacaaatcg acgagaacac ctcagcagaa aacttagcac gggactttaa       900
     tattccacaa aatgttactg taaatactaa ttctcaaaat gtcaataatg taaataattc       960
     tccgcaaaat gatagtataa ataaccgaag ctttgaaaac catggcgaga ctgttcaaag      1020
     atcgtttgaa aatgccaccg tmaattatca gccacataat caggaaatag atacaattcc      1080
     tccaaatgtc aacaatactc ctcaatatca taataatagg cctcaaaatc taaattctat      1140
     tcctcaaaac gttaataatg ttccacagaa tcatagtaat atgccgmaaa attttaataa      1200
     tattccgcaa aatgttaata atgtaaataa taatttttcg caaaatagga atgtaaataa      1260
     ccccaattta gaaaatcagg gcgggaattt tcaaagatcg tttgaaaatg ttgccgccaa      1320
     ttatcagcaa aatactcatg aaactaatca gcaattttcg ggtttttctc aagctttcga      1380
     caatcagcac cagcgccttg acgcagcagt gtcaggaatg caacaaaatt ccagtgtaaa      1440
     taatcagcct agtaatttaa gatcaggtca ctttagtagt gacatcaatt cacacaattt      1500
     cagtgtgaat aatcaacata gtaatttaag atcaggttac tttagwagtg ataacaattc      1560
     acamaactcc attgtagata atccacatac taatttaaga tcaggtcatt ttaatcgcga      1620
     taataattca caattccgag aggaatcttc accaagattc acgagcttca tggacaaaaa      1680
     tcaacaaagt ccattctata ttcgctaccc aaaaattgag ttcccaaaag tcgatcgtgc      1740
     tcaaccacga gaattcttgc ttcaattcga acaagcggcc aactttgctc agttaaatga      1800
     tcaacagaag attgagctct tcttgttcgg actggaacaa gacggtgatt tgtggtttcg      1860
     taacaacaga acatacttac gcaacgtcaa aaagtggaca cagctaaagg aagaattttt      1920
     ggaagaattt gagaggagcg taaatttaag tttcagttgg atgcagtttc aaaacaggaa      1980
     acagcttgtc aacgaggaac cttctgtata tatagaacac aaaatttatt tggctaataa      2040
     cattcggcac aaattgtcag aagaagaatt aatagactgc ataattagag gattttcacc      2100
     actcatggcg cgtcaactgt ttatgatgga caatccagac gttaagacct tgaaaaagaa      2160
     cgtaaaacgc atcgaaaact catttatgat agacaatacg gcgaatgaca accaacatca      2220
     taaattgaac tctattcaaa atcacccccc tctctcagat ttttcatcaa aatgtgaaga      2280
     gattttgatg caaaaaatga aagagatggg tttgaatccc gatgtaaaaa atgtaaataa      2340
     aggaaacatc aacgttgttt ccgaaaacga gataaaaggt aacagcaagg cctactacat      2400
     ccaaagagaa agtagaccaa gaaacagaga ttacagtaga gataggcaaa cgtcatacca      2460
     gcaataccat caagacagcg taaatcgtag ccacagccgt gacaaaaaag attacagaca      2520
     tgatagaaac tccagccgtg atagcaatca cagaagcgac aaagattaca gaagtaaccg      2580
     gaactatagc cgtgacagag actatagtcg tgatagaaac tatgaccatg gcaaagatta      2640
     cagatatgat agaaactcca gtcgtgataa ccattacaaa catgacaaag attaccgaac      2700
     tagcagaaac tatagccgtg acagagatta cagcaaagaa agaaaatcgt cttaccagca      2760
     atacgatcgc gataacagaa atcgcagcaa cagtccacaa agcaaagatt atggacgcaa      2820
     caggaatcat agccaaggca aagattacag acacgacaga aactccagcc gcgatagcca      2880
     tcgcagaagt gacaaagatt acagaagtaa ccaaaactat agccgtgaca gagattatag      2940
     tcgtgataga aaccatgacc aaggcaaaga ttatgcagaa agtaaaaatt ggagaaaaag      3000
     atcgccgacc cccggattca gacaatcwag aaacagaagc agaactccgt cgggaaaaat      3060
     catctgcaat tactgcgaga aaccaggaca ctacgaaaga aattgcgata aaaaacaacg      3120
     tgagcgaacc aatcaaaatt ctacttcaaa gcaaaactta aaatgggatg ctgaaatttt      3180
     gagtgtagga atcagttctg ggttaaaatt taaagtttgg attagaaata aagaaataac      3240
     tgcattactt gactcagggg ccagcatgtc tcttattagt catgacattg cagaaaaagt      3300
     aactcctttg aaaagaaaaa ttaacatcgt aacagcaaat aatgaagtga taaaagtaat      3360
     aggaaatact caactaacag taaaattaaa tgaacatgac gaaataacca tcaaatgcct      3420
     tgtagttaaa gaggcaaata caaaactttt attaggtaat gacttcagta attatcatgg      3480
     cgtgaaaatt aatttttcta ctaataaaat aaccctaaaa tctgacgcgg gaaacgaggt      3540
     tgcagtgaac atggaaatta aaaatcaaaa aaccgtttta tctcttttac ctgaacgcga      3600
     attcaaagct actccactca agctaagtac aattatcaac aggaaaagag gcataacatg      3660
     tgtcgacact ggagcatgtg ctaacatcat cgattcatct tatgtgcaac aaaaagacat      3720
     caaaccaact aaacgttggc gattgmwgac wgcgaataac agcactctaa aaatcatagg      3780
     agagactcaa ttcgacttag aaattcaaca gatcaaatat cccgtwaaag cactggttgc      3840
     agaaaaatta tcataccctc tgttgattgg aaatccattc aaccaaaatt tcgtcgaaaa      3900
     aattgacttt caaaccagtg aaataaccat gaaaatacca tacaccaaca aaaaattaaa      3960
     agtccatttc agttcaaaag aaatggagga gaaaatattt gacaataatt atccagaaac      4020
     atctgataaa agcaaaaata ctgatgaaga ggaatttcaa aaactagcct ctatctgcga      4080
     aataaatgca gaagaagaag aagcaaaaga atcgataatt gttataaaac aaataacgat      4140
     accggcaaaa tctgagaaaa ttgtacattg cgttgtcaaa aattttaaaa acgagagaga      4200
     aaaaatcata acgcttacca caggcgcaga aaaagctaaa aaactaacta caactcatga      4260
     cctaattacc gtcaccaaat ttcttcaatt aaaaataaaa aacaccagtt gcaaacgtgt      4320
     aaaacttttt aaaaactacg tattaggaac attaaatgag cccaatcaca aaccagaatc      4380
     agttgaatgc tttgagataa gatcgagcaa tttatctcaa gaccgcgaaa atgaattgca      4440
     catcaacgaa aaactgtcat cagtacaaaa gaaacaactc accgatctca tagggcgata      4500
     tcaagacata tttttatggt ctgatgtgaa attcgaggca ggaaaagcta attatcctgc      4560
     gcaaaaactg gaattatcgg acaaaacacc catccataga gcgccttaca gaaccggaat      4620
     gcaacaacgt gcactaatcg atgagtatat tcaaaaaatg ctcgacacaa aagtcatcaa      4680
     aaggtccacc tcaccgtaca gcagtccgct gattttggtg aaaaagaaag aaaaaggaaa      4740
     atatagacca tgcattgatt ttcgaaaatt aaatgaaaaa ttgaaagagg aaacttttcc      4800
     aatgccaaga atagatgatc tactcgcaag tctcaatgac acagcaattt attctacgtt      4860
     tgatttagaa tcaggttttt ttcaagcaaa attacaccca gacagtggtc cgatgaccgc      4920
     attctctact tataataatc attatgaatt tacgtgtctt cctcaaggcc tttccccatc      4980
     accgatcaga ttttcaaaaa tgatcacaga aattttcagt agactattat atcatacttt      5040
     gcttgtttat atggatgaca tactagtctt ctcaaaaaca tgggaggatc atgtgaaaaa      5100
     attggaagaa ttctttaagc tcgtacgagc agctaatttg aaattaaaac caggaaaaag      5160
     taaaattggt tattatgaaa cgaaagttct tggattcaaa attaattcaa agggcataaa      5220
     acctgacgac gaaaaaataa aagtaattaa agaatttccg acccctaaaa aacaaaaaga      5280
     catacgctca ttcttagcca tggcaggttt ttatagagcc cacataccac actttgcaga      5340
     gatcagtctt cctctaattc acctgacgaa acaaaaaatc ccatttgaat gggacagtga      5400
     gtgtcaaaag tcttttgaca cactgaaaaa agcactgatg agtgagccac tgcttactca      5460
     ctacgatccc gaaaacggac aacttgagct ccacaccgat gcatcaaatt acgccatttc      5520
     agccgtacta aatcaagtca aatacgggtc aatccaaccc ataggctaca tgtcaagagt      5580
     acttagctcc aatgaaagca attggagcac atgcgaaaaa gagctactgg caataacatt      5640
     tggcatcgaa aagttcagac cgtttttatt caacaccaaa tttacgatag tcaccgacaa      5700
     ccaagcatta gtctacataa agaaaatcga atctccaaca acgcgcttga ccaaattggc      5760
     actgaaattg tcggagttcg actacaaaat acgtcacaca aggggcaaag ataatacagt      5820
     cgctgattgt ctcagcagat acccctctac ttcagaaaaa atcagttcaa tcgaaatagc      5880
     tgaagaagaa gaagaagaag aagaaaaaga agaagaagag tatgatgaag aagaagaagg      5940
     gcaattaatt gaagaagagg aagaagaaga aaaagaagag caattggaag aacaacaaca      6000
     acagctagaa gaagaagaaa aacaagaaga agaaaaaaaa gaaaatgaga acaatttgag      6060
     cgacaaaaaa gtaaagttgg agcaaagaaa agatgataaa ctcaaaataa tctttgaaac      6120
     cttgcaaaat ccacgacttg caacgacaaa agaaatcaaa acagctcgca gtttttacat      6180
     aaaatatggc attttatggc gaaaaacaaa ctcagaaaac gacgttcttg tcataccaac      6240
     ccaacttatc aatgaagtac tataccaaat tcatgattgc ccctttgctg gcggtcatca      6300
     aggaattttt aaatcgctga aaaaagctaa agagcgattt tattgggatg gtatggacaa      6360
     atgtattcga aattatgtcc tttcatgcga aacctgtcaa ttcgtcaaga aaatcaaaca      6420
     ccatgaaaaa tatggaaaaa tgacgtcaca taaaatctct ggcagtgttt ttgcaaaaat      6480
     atcaatcgac tgcgtcggac ctctaaaacc ggcaaaagca gaagatggga ctataaaaag      6540
     gttcataatc ggagcaatag attattttac aaagtttcta tatttgaaag ctgtgccaaa      6600
     tattcaggca aaaacagtag catcattttt gaccgagtta tttaatcttt ttggagtcgc      6660
     agaaaacatc gttatggaca atggtcgaaa tttaaagtca aactatgtgc aagaattatt      6720
     ggaccaatta ggggtgaaaa gaactttcac gtctgcatat tcaccaaagt ccaacggcca      6780
     atccgagcga atgtggcaaa cactcggaaa tatattgcgt tcatatacat ccagcaatca      6840
     aaaagactgg ccgctttaca tcgattcgat catgtcaagt cataattcca cggtgcaaag      6900
     tagcacaaaa atgaccccat attttatgct cactggacaa aattttagat taccaattga      6960
     tgccgcgtta agaccaaaca gcgataacat ggaaattatt gatcgacttc acaaattaga      7020
     cgcagtgcga gaggaggcct tggaaaacat caagttggct caagaaattc agaaatccgc      7080
     ccacgatgaa gacaaaaaag atccgccttt taaaattgga gatctcgtct taattcatca      7140
     gccggccaga acgaaggagc tctcagaaaa actgagaatt aaatacaaag gaccgtttaa      7200
     aatcatcgaa caattatcac caagtcgatt cagaataaaa acaaataaga aaggcaaaga      7260
     aggagaaatc atccaagccg accggctgaa gaaatatgtt gagcggatgg gatgagccac      7320
     atgtaagaag aagaagaaaa agaagaagaa gaagaaaaaa caacgataga aaaagagaaa      7380
     tcccagtacg attattcctc ttcaaaaaca acatcttttg aaatcattct gagttactat      7440
     ttaaatctgt aaaattagca tcttatccct gcaactcaaa agtcatcaac atctgtgccc      7500
     atcaatgaaa aaaaaaaaaa gaagaccaaa acgaaaacaa tcgaagtcaa cgctgacctc      7560
     actcaatgcg ctaataacaa cgtaactctc tctagccatt catcgaaaaa aaaaaagaaa      7620
     agaagaagaa aagaaaaaca aacccgttaa ccacccgcag atagtcttag agcgcacccg      7680
     caccctaaca ccctcgcccc cctcctttca gaatatcacc atcaactcga agacaatgct      7740
     gggcgcatca tccacgcatc aaaaggatac cacgtgctca aaaaagggcc cgagggaaag      7800
     tttttaccga aactagcggt ctcaattcaa acaatgttgc catgcattaa aatgcacaaa      7860
     atgcmtgcct tttaattttc ttctataact ctctccttgt ttctctcata gaatagtaaa      7920
     atcattcatc atagcccaaa agggttgaaa aatagtctct caacctcttt cggacagtac      7980
     agtcgattga ttccgatcag taatagtgtt tatttttctc ctttattagt tattattttt      8040
     ctcctagtca atttcgttct gttttgtttt ttgttttttt ttctcgttgt tgttaaattt      8100
     tcatataaaa acaaaaaaaa attatgtcga aaaataaaat caccatccat gaatatagaa      8160
     agcgacagga ggaatataac aaaagtgtaa tatacgagga aaacatattt aatatgttaa      8220
     gtttgtggtc ggatattaac gaagaacckg aamcgattat cgaaagtgcg caatgcgagc      8280
     gaataaatga kttaaktgtw gacctcaacc ctatcgagga tatacctacg gttgacatcg      8340
     ttccatcaaa matcatcgaa aatcaatcat catcgtcaat cagctcgcaa ttggaactca      8400
     cggaaccatc aacatccgac tggtggcatg aaaaacttwt ckacgtcgat aaaccctcca      8460
     ccagcacagc ccgcacactc cgaaaccacc aactagaagt gtggmaaacc tcaaacaagg      8520
     agacgatatg ccaacaccta accaccgaat caaccgctac cgccgccgcc aatatcacac      8580
     cttccaccag cacaaaggag ccaccgatag acgacaacgc agacaagaaa aagcggaaag      8640
     gaaaaggatg ccgacagcgc caactgatga aaagaaggga aataagaaga aaacaaaaga      8700
     cttacgacgg ctcttacctg tgataatcaa aagtaacaat aagtaagtgt gagtgttacc      8760
     tgtagtatgg gtgtgtaagt gtgagtgagt tcgagcagag aaaatcgaga ataggagagc      8820
     gagagagaaa atagagacaa gcgaaagtga gagcgagagt gagagtgaga aagaaatagt      8880
     tggcccgtta aaggatagtt ttgtatttat agtacctcag aatcgttttt tcatcgaatg      8940
     ttcttcttga tatttacatt ttaattgtat attcatattt atcatttatt tgtgtattca      9000
     tatttatctc ttatttttat attcacattt atctttaatt tgtatcttat tttaattatg      9060
     ttatttttac ttgttattcg aatgaatgat tattcgtgat gtgtgtatgt atgaatgaaa      9120
     aaaaaaataa ttgtttattt tgattatttt tgtttttttt ttgtttgttt gtttgttgtt      9180
     tgactgtttg attgactgtt tgtttgactg tcgtttgatt gtttgattga atgtttgctt      9240
     gactgtttgt ttgaatggtt gtttgacagt ttgtttgaat gtttgtttga cagttcgttt      9300
     gattgtttgt ttgtttgttt gtttgttgac gatttgaaag ttcgtttttc cataaagatt      9360
     gtacgtttga gatgatttat ggcatctgca cgtcattctg ccgaaaccct cataaaattt      9420
     tcgtttcacg aaaattttaa agggaagagg gaggtatgta atgcacgtcc gagcatttct      9480
     ttttcatctt cctaaaattt tcgtttcgaa aattttaaag gggagaaaga ggaa            9534
//
ID   Gypsy-61_TrVa-LTR repbase;    DNA;    INV; 643 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-61_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-643
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 365-365 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 643 BP; 146 A; 160 C; 178 G; 158 T; 1 other;
     tgtgatgagc cgagccaggc cctccgcgcc gcaggacgag tggggccwct gctctggtgg        60
     aggggcagag gggatgaatc tcctctgcgc atgcgccaga gttcgaccta ctttctccga       120
     gaccaagggt ctggcgatag ccaagggacg agctagaaat cattcttagt tcagcagctg       180
     agtgggccga caccccaaat cgttgtctgg agtggcgaga gaatcattgg tgtgcgtgtg       240
     agagtggagc gtgatcgtct ctgtaatatt attatatttg tgtacgttaa ttacaatata       300
     ttaattactc tcacccacac ctgcagttga tattccatcc tccctgcaac ttacaggtac       360
     tcgcgcatca gtatcgagaa catagagttt ttccttatct ggcttggtca gctcgtcttg       420
     aacgggctat aatcccgggc tactggagga aaagctctac tcgcgagtcg gcttggttag       480
     ctcgtctagt acgggctgca aatccgggct gcatgcgtga ggcatctctc gatacgcgag       540
     tgcctgtcct cacctggagg ttaccagaag aaatccctgg ggggacgtca tcacatggta       600
     gacaaaccgt gtcattgtaa aggtgaagac tcacgccatc aca                         643
//
ID   Gypsy-620_AA-I repbase;    DNA;    INV; 8288 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-620_AA_;
KW   Gypsy-620_AA-LTR; Ty3_gypsy_Ele185; Gypsy-620_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8288
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [6176-6658] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1759..3516
FT                 /product="Gypsy-620_AA-I_1p"
FT                 /translation="MVRKYYNIDLRTAADQVPVMRLATPQPEAMGATARGV
FT                 QSKGSPASQKATEKPDMDTEVILIETPVKNRLSNISFPQDAEELISFSDDK
FT                 RTLACPQGTPKDRTNQESLTGAFPKQSRIDEGQSDVGLGDVIEGVRPAVVR
FT                 GKLNEFGVGLPLEVPADRVKVGMPGGTSEFRTPFSPLRLDCMWETPEHRSN
FT                 IPNSMLGLQKTVGNPRATTASEAKVLPSASNPSQPMWNPANGKREMDEFVH
FT                 KSEIEGYIKAYLNQVFVPERRYPGMNHPIVDTLVDRIANVGIHDPEVSQIS
FT                 REIDQRQEGNLDPQIQQPGRNPSSGDAGMNNRYFVSGVGLSQPQTAPPLIS
FT                 PFNNGVEPLYPQTNRWGPNDQLGGGWSNSGSRRRLPHQTCNIIEKWPKFSG
FT                 DSNPVPVVDFLRQVEILSRSYQVTPDELRMHAHLLFKDDAYVWFTAYESQL
FT                 ATWDMLLVYLKMRYDNPNRDRFIREEMRNRKQRPNELFSAYLTDLEAMSQR
FT                 MTRKMTNEEKFDIIVENMKLSYKRRLALEPVNSIAHLAQLCYRFDALEANL
FT                 YTPRSGLKPAVNAIGYDDELDRESGDDEEAFVLALQQKN"
FT   CDS           4559..7030
FT                 /product="Gypsy-620_AA-I_2p"
FT                 /translation="MVSDCRKVIDEEVERMQKLGVVEECSGPIEFLNPLLP
FT                 IKKSNGKWRICLDSRRLNSCTKRDDFPFPNMVGILQRIQKSRYFSVIDLSE
FT                 SYYQVSLTDGAKDKTAFRTNKGLFRFVVMPFGLTNAPATMARLMTKVLGHD
FT                 LEPFVYVYLDDIIITSLSFEHHCELIRKVAERLRAAGLTINLQKSKFCQKK
FT                 IRYLGYVLSEDGLSMDASKIQPILDYAQPKTVKDVRRLLGLGAFYQKFIKN
FT                 YSDLVTPISDLLKGKRKNFVWTQEANQAFEKLKNALVTAPVLANADFQSPF
FT                 IIETDSSDLAVGAVLTQEQNGDRRPIAYFSKKLSSTQKRYSATERECLAVL
FT                 LAIEHFKHFVEGSHFVVCTDAMSLTFLQTMSIESKSPRIARWALKLSKYDI
FT                 NLKYRKGSENVPADALSRSIHSIAVELPDPYIVDLKRQIEKSPERFKDFKI
FT                 VDGNVFKYISNSTIPEDVTFRWKMLVPKADRSKVIEEVHREAHLGYLKTLT
FT                 KIREKWYWPRMSSDVKQFCSSCEVCKESKTPNINTRPLCGKPKQCARPWEM
FT                 ISIDFLGPYPRSKKGNVWLLVVCDFFSKFVLIQCMKNATAPAVCAFLETMV
FT                 FTLFGAPSVCISDNAQVFKSELFRKLLLKYGVNHWNLAVYHPSPNPAERVN
FT                 RVIVTAIRCTLSKKINHRDWDESINTIAMAIRTNVHDSTGFSPYFINFGRN
FT                 MVSDGQEYDNLRHLIPESGRDRKELDDETQRLYEIVRSNLHKAYEKYSRPY
FT                 NLRANRRHDFQKGDVVYKKNVHLSDKAKNFVGKFGSRFSKALVSEKIGTNT
FT                 YILTDMQGRRISGTFHGSFLKK"
XX
SQ   Sequence 8288 BP; 2500 A; 1623 C; 1809 G; 2335 T; 21 other;
     taattggacc aataaatgaa tttgaaacta tctcgtgcaa aggtcccaaa ataaggcaca        60
     tcgttaacgt ttttttgcat tggttgaaat ccttattgga gtgatctttt tataatttta       120
     ataattaatt gaattggtga attgggaaag tagattgaag agttttcttg gtttaccggg       180
     agggaattat caggtaagtt gggtcagcga atgggtttaa gatttgtcgt agtgtttgag       240
     ccatttaact aactcgcccg agtagagggt ctcaaagccg ggaccataac mgcatcagca       300
     gtcttcctcg gttgaggaag tggcgcataa gctgctgttt gtgttgagca agaacwatta       360
     cgwtacattt tggcgcccaa cgtggggccc acgatctgaa agtttagaaa caaatttaga       420
     aacaaattgg attgcaaatt ttattttgat taagttttgt tgagttttgg ttgagattca       480
     aaaaaaaaat agctataaga attaggttca aatgtacata tattttgttc tgggtctgaa       540
     ataaattagt tttagttttg atttttgaaa aattatttga aattctcaga attcttctat       600
     tatttttttt attactaata attgtgatgg aaacctaccg aatttatgcg aaggatttgg       660
     aggaggatga ggttgactat gagttgacga ttcgtggata tccattagag ggtccactgg       720
     aaactcgtta taggtcctta cgattggcct tacgtcaacc agaagatgga gacgctgtat       780
     taggtactga gctgggtgct gcgaattgaa tcccttttta ttttcaagca aatcttgaaa       840
     catgcttctt gtgaagaact gagcttgtcg tattagtccc tcaaacgtca ctttgagttc       900
     tctgtttatc aaatttcgct ctctgatctc tctctggaga gcttgaatgc gtcctagctc       960
     gaatgacttt ctcattgtga aatcggctaa tagtgggtct gctagaagtc cgtggatcta      1020
     attcattttt atgtgattgt gcctttggat tagaacgctg agttcattca aaagttgccg      1080
     gagcagcaat tgaaaggatc ttgtcgatgg ttttattatt ccggccgtag caactcgatt      1140
     cctagcttca aaccgaataa catcgaaaac gacgattctg attaatcaat ttcggaaaca      1200
     ccgatggcgt cagaatctcg aacgctttga ttttgaagat tatatgggtg gccaaaagcc      1260
     aaaaggagaa gaaatactca accgacaaaa tgttgcgcat gaagtgtcaa gtattttttc      1320
     ttgtgtgtat attaggtaca ctgttgttga agtaagtctt aaatattatt tagactattt      1380
     aacaatttgt tgcaatataa agaaaataac aaaaatagat atatttttta tctctgagat      1440
     tacaatactt tctcacgaga tcacattact ctctcacaag taacataacc acaatctgga      1500
     atgtttggct ccgacattca ggctcccgct tgacaagcaa attgagtcag accgcagcac      1560
     ccaggtactg agtattcttt gctcggtgac tttgtagttg tccccataaa gttgaaagaa      1620
     attgaagctc agttagaaac cgatgatttg aagtgttttt cgcgacttgt tcattatcat      1680
     aaaagagtgc gacggtatgt tccggagacc gatggccaga gacgcaatca acaagagttg      1740
     cttgacgtca tcgttcgaat ggttcgaaag tactataaca ttgaccttcg aaccgcagct      1800
     gatcaggttc ctgttatgcg attggcgact ccccaacccg aggccatggg agctaccgcc      1860
     aggggggtcc aatccaaggg ttcacctgcc tctcaaaaag ccacggaaaa accggatatg      1920
     gataccgagg ttattttgat cgagactccc gtgaagaacc gattgtccaa tatttctttt      1980
     cctcaagatg cggaggaatt gatcagtttt tccgacgata agcgtactct agcctgtcct      2040
     caaggaactc ccaaggatcg gaccaatcag gaatcgttga caggagcgtt tcctaagcaa      2100
     tctcgaattg atgagggtca aagtgatgtt ggtctgggcg atgtaatcga gggtgtacgt      2160
     ccagctgtag tgcgcggtaa gttgaatgaa ttcggtgttg gtctaccgtt ggaggtccct      2220
     gcagacagag tgaaagttgg tatgccaggc ggtaccagcg agtttcggac tccgttttcg      2280
     ccacttcgcc tagattgtat gtgggagact ccagaacata gaagcaacat cccgaatagc      2340
     atgttgggat tgcagaaaac agttggcaat cccagagcta caactgccag tgaagcgaaa      2400
     gtgttgccta gtgcatcgaa tccatcacaa ccgatgtgga atccggccaa cgggaaaaga      2460
     gagatggatg agtttgtgca taaatcggag attgaagggt atatcaaggc atacctcaat      2520
     caggttttcg ttccagaacg ccgttaccct ggaatgaacc atccgattgt ggataccttg      2580
     gtcgatcgaa ttgccaatgt tgggatccat gatccggaag tttcccagat atcaagggaa      2640
     atcgaccaac gtcaggaagg taatttggat ccacaaatac aacagccagg gagaaatcct      2700
     tcgagtggtg atgctggaat gaataataga tattttgtgt caggcgtagg gttgagtcaa      2760
     ccgcaaactg caccaccttt aatatctccg ttcaacaatg gagtcgagcc actctaccct      2820
     cagacgaacc ggtggggtcc taatgaccag ttaggtggtg gatggtctaa ttctgggtcg      2880
     cgtcgaagat tgccacacca gacatgtaat attatcgaga agtggccaaa gttttccggg      2940
     gattctaatc cagtcccagt ggtcgatttt ttgcgacagg ttgaaattct cagccgttca      3000
     taccaagtaa cgccggacga gcttcgaatg catgctcatc tgctttttaa agatgacgct      3060
     tatgtatggt tcacggctta cgaaagtcaa ctagcaactt gggatatgct cctagtatat      3120
     ctcaaaatga ggtatgacaa cccaaatagg gaccggttta ttcgagaaga aatgaggaac      3180
     cggaaacaga ggcctaatga gttgttcagt gcctatttga ctgatttaga ggctatgtcg      3240
     caaaggatga cgcgcaaaat gactaatgag gaaaagttcg acattatagt ggagaatatg      3300
     aaactctcct ataagcgcag gttggcctta gaacccgtaa actctattgc acatctggca      3360
     caattgtgtt acaggttcga tgccttagag gctaatttgt acactccgag atctggatta      3420
     aaaccggcgg tgaatgccat aggatatgat gacgaattgg acagagaatc aggagacgat      3480
     gaagaggcct ttgtactagc tcttcaacaa aaaaattnca agaaaaacag ttcgagcggt      3540
     ccaacatcta aaccaaaact tgggaaggaa agtaatcaat tactttgctg gaactgccgc      3600
     aagagtggac acatgtggcg cgattgtgat cgtaaaaaag gaattttctg ccgtatatgc      3660
     ggaacaccgg acactaccgc gtatcgctgt ccagagaatc ataatttgag acctcgagac      3720
     tcatcacccg aggaatcaaa aaacgagtag atccagggat tcacgggaac aaatcgcctg      3780
     agaacgccga tgatactgtt ccccctcgtt cgttcgaata cttctgtcac agttataata      3840
     ttaacacctg cttcagacga tgtccacatc tacgagtcaa aattttagat gaggaaataa      3900
     taggattggc tgacactgga gcaggagtta caataatcaa ttcggtcaat ctaattgaaa      3960
     aattaggttt gaaaatccta aaatgcaata ttcgcattaa aaccgccgat aacacggggt      4020
     acacctgcct tggatacgtg aatatccctt acacatacgg aacaagaaca tgtgtagttc      4080
     caacaatagt agttcctgag atctcaaaac ctttgatatt aggtatagat ttcttgaaca      4140
     cattcgattt taaactgatg gcacctggaa ttccagaaaa caccagttca gcccaagaac      4200
     agaacccaac tttcgataga catgaagtac cgctcatgat agcagaagat ttcttctcag      4260
     atgacgagca aactgtatgt tttcaaattg aatccgctga tcaagacttg tctgtcggac      4320
     cttcggagat agatgggagt ttggagatgc ctacgataga gataccttca acaatcatta      4380
     aatctccttg ggatatcgat acggaacatt atctaactga aaaacaacgc catgctttgt      4440
     ttgaggcagt gacgaatcta cccgctacgg ttgaaggcag tttaggtcgc acagccatct      4500
     tggaacattc aatagatctg ttatcaggta ccagaccccg tagactaccc atgtataaat      4560
     ggtctccgat tgtcgaaaag taatcgacga ggaagtggag cgtatgcaaa agcttggagt      4620
     agtggaggaa tgctcaggcc caattgagtt cttgaatcca ctactaccaa tcaagaagtc      4680
     gaatggaaaa tggagaatct gtctcgattc aagaagactg aactcgtgca cgaaaaggga      4740
     cgattttcca ttccccaaca tggtgggtat tctgcaaagg atacagaaat cgcgttactt      4800
     ttcagtaata gacctgtcgg aatcgtacta ccaggtgagc ctgacagatg gcgcaaagga      4860
     caagacagcc tttcgcacca ataagggact gtttcgtttc gtggtgatgc ctttcgggct      4920
     taccaatgcg cctgcgacta tggcacggct aatgacaaag gtgctaggcc acgacctaga      4980
     accttttgtc tatgtatatt tagatgatat aattatcacg tcgctttcgt tcgaacatca      5040
     ttgcgagctg ataaggaagg tagccgaacg tttacgtgcc gcaggactca ccataaacct      5100
     gcaaaagtcc aagttttgcc agaagaaaat acgttaccta ggatacgttc tttcagaaga      5160
     tggcttgtcc atggatgcat caaaaattca gcctatcctc gactacgcgc aacccaaaac      5220
     tgtaaaggac gtgagacgac tgctgggtct tggagcgttc tatcagaaat tcattaagaa      5280
     ttattcggat ctcgtaacgc ctatttcaga cttactgaaa ggaaaacgaa aaaatttcgt      5340
     ttggacgcag gaagctaatc aagcttttga aaagctaaag aatgcattgg ttactgcacc      5400
     agttcttgcg aacgctgact tccaatcccc gttcatcatt gaaacagact catcggattt      5460
     ggcagtaggt gctgtcctga cacaagagca gaatggtgac cgccgtccca tagcttattt      5520
     ttcaaaaaaa ttgtctagta ctcaaaaaag gtatagcgcc accgagcgag aatgtttggc      5580
     ggtgcttctt gctattgagc acttcaagca cttcgtggaa ggaagccact tcgtcgtttg      5640
     tactgatgcg atgagtctta cattccttca gacgatgtcc atcgagtcga aatctcccag      5700
     aattgctcga tgggcactga agttgtctaa gtacgacatc aatctaaaat atcgcaaagg      5760
     gtcggaaaat gtacccgcgg atgcactttc gcgaagtatt cactcaatcg cagttgagtt      5820
     accagaccct tatatagtgg atctgaagag acaaattgaa aaatcccccg agcggtttaa      5880
     ggattttaaa atagtggacg gaaatgtctt taagtatatc tccaactcaa ccatccctga      5940
     agatgtgact tttcgttgga agatgctcgt cccgaaagca gatcggtcaa aagttatcga      6000
     ggaagtacat cgcgaagctc acttaggata tttaaaaact ctaacgaaaa tacgtgaaaa      6060
     atggtactgg cccaggatga gcagtgatgt taaacaattt tgctcttcat gtgaagtttg      6120
     caaagagtct aaaactccaa acatcaatac taggccactt tgcggaaaac ccaaacagtg      6180
     tgctagacca tgggaaatga tttctataga tttcttgggg ccttaccccc gatctaagaa      6240
     aggaaatgtt tggcttctcg tggtgtgcga tttcttctcc aagtttgtgc ttatacaatg      6300
     tatgaagaac gccacggcgc ctgccgtatg tgcctttcta gaaacgatgg tctttaccct      6360
     tttcggagct ccatctgttt gcatctctga taacgcgcag gttttcaaat cggagctgtt      6420
     tcggaaactc ctacttaaat atggagttaa tcactggaat ttagctgtgt atcatcccag      6480
     tccgaatcca gcagagcgtg taaatcgcgt tattgtaaca gcaattcgtt gtacgctaag      6540
     taaaaagatc aaccaccgag actgggacga atcgattaat accattgcta tggctatacg      6600
     cactaacgtt catgacagca cagggttttc accctatttt attaatttcg gccgtaacat      6660
     ggttagtgat ggtcaggaat atgataacct gcgacatcta atacccgaga gcggacgaga      6720
     tagaaaggaa ctagatgacg aaacccaacg gctttacgaa attgtgagaa gtaatttgca      6780
     caaggcttac gaaaagtatt caaggccata caatttacga gccaatcgcc gtcatgactt      6840
     ccagaaagga gacgtcgtct acaaaaagaa tgtacatctc tctgataaag cgaagaattt      6900
     cgttggcaag tttggtagca ggttctccaa agcactagtt tcagaaaaaa tcggtactaa      6960
     tacctatatc ctcacagaca tgcagggtcg taggatttca ggtactttcc acggctcatt      7020
     tctaaaaaaa wcstaaaaga aataaacttc agctatgact gcattcccac cggagaatgc      7080
     atacactaat ggaataacca taaaccaatt caaaatacac tttgtggtgc atcggtttaa      7140
     catgacttga gaagtccttt gagtttcctc agtcagtata cggttcattg atcaagttgc      7200
     agcaatgtct acaatgaacc ctttcgtagc tgcataagat aaagctatga atgagtcact      7260
     acggctctga ccattgatga aaatcactaa aacactcatt gagtaaatgc cmaatggatc      7320
     tagtcgagtg acaaacttgc atacggcaca atttcctcct agataccaat aatccmatcm      7380
     ttcgtaggta gtaaaattgt tttaatttcc ccaacaaaac atcggagtca attcagtgcg      7440
     tcacgcgttg ctccacatta aaaatcactt tctttacaca actttacctc actccttcgc      7500
     aaaagtagat gaccttcgat tttccatagt agtagccagt tgaaactcca attttctccw      7560
     tagcttccat agtttctcca taattttcca ctccgcgtgc attttttccc agcttgcatt      7620
     tccatacctg ttaaaawttt tgtkttctgc wgataacagt gacattaagt tgacagmgcg      7680
     atgttttctt tttgcaattg gcgatgatgt gtcctcgtca gttttaggtg acgggtgtac      7740
     ccgttcatgg aatgagacga atgcttcaag kaagcgtttg tttgaaaggc acacaaagtg      7800
     cagtaatgga agatgttttg ttaatttctt aaatcatttt gcgaaatttc tcagatcttt      7860
     ctgaggtggt ttaggctagg aataatatgt tttttttttc aaatattttt ggagttagtc      7920
     tgatatgwtg gttggtagtg ttaagtatat ttccaaatat ttttggagtg aatcggwaat      7980
     tatagatggt agttgaattg aattaaggaa gcaaatgtta tggaaattag caaagcatag      8040
     gattgatkgt attgagaaag taacwaatat tcgaacgtaw ttttaaggac acagaacaaa      8100
     atatttgaag ttttctwttt gttgattaga tttttcaagg taaacatatg ttcatcgata      8160
     gcgaaataag atcattaaat ttcaaaaata acaatattaa gctttaaaaa ataaataaat      8220
     aataattaat aaaaattttg aaatttaaat aatttcaaaa tttttatttc atttcgtata      8280
     ggcgagaa                                                               8288
//
ID   Gypsy-620_AA-LTR repbase;    DNA;    INV; 1256 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-620_AA_;
KW   Ty3_gypsy_Ele185; Gypsy-620_AA-I; Gypsy-620_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1256
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1256 BP; 357 A; 286 C; 273 G; 329 T; 11 other;
     tgtaaagcca ttaaaaaaac caatgatcca atttgttctt aaatccaatc ggttccacta        60
     gactaatatg ctcaatcgcc aacmttacat cgcaaagcga aatgcatgac aaaagctcag       120
     cacggacaac aacccctatt cgcccttctt tgcgaaaggg aaattactga gtgcgttcgg       180
     taaaatgatt ttgaaattgg ctccactctc tcgttctctt aatctctatc cgcatgagtg       240
     ctttgcctgg tgtttaaatt gcgcctttaa tctttgcata ctgcaatgca cggattctca       300
     aatggcttta aaaatgttaa accaaagggg attctttgtt ctgcatggat taggcagttt       360
     ctgttgaaac aataagtagt ggcgcttggc caaaccaaca atagctcact tgagtatcga       420
     tttcctacca gtgtggatgc gttaagctat agctaatctg tagtcagaag tgcagtatag       480
     ttggcatkga agccaacttw gaaaattgtt ctccwagtgt gatctaaacc gaaaatagtg       540
     cctagaaaat ccaagtaata ttcagattgg taagactttg tgaawcctag tatwaagtct       600
     gtacctaawt ttgaatttcc gacttaactt ktagtkagta catgttactt aggcaacaca       660
     cgtgaacaac cgagkgctag ttgtaattta cctagtaaat ttcgaggtaa gccaatgtga       720
     ctgaaacaag taggctccaa ttaaacwaat acgttgcagg aaacccctac aacgtggggt       780
     gttcgtgtag gctcggatta agcaccttca gccacccacg tgcattgcat cctcggtgtg       840
     gcctgcagtc ggattaccgc caataagctc tcctgagaac cacttctccg ctcgcctctc       900
     atctgcgata cgactaatcc agcaatactg ctcgaacgca tcgactggtc gaattccatc       960
     acgttttcga atggttcatt gcctaacccg tctgaggcaa agcggctaaa ttatctgcgg      1020
     gtgaagtggt gccgagtgag ctgcgaatcg acgactgcaa accgacgcct ccccacgtgg      1080
     tgaaccattg caaggtagga gtgaatcccg catgcgaagc gattgaccaa tagttgaacc      1140
     ttgtcggggc cccgatcaac gcgtcgttgg accaccggtg ccggcaagta ctaaaaaaga      1200
     agaacctagg ttaagagaag ttagggtagc gtttagtaga tcgatgtgca cgaaca          1256
//
ID   Gypsy-621_AA-I repbase;    DNA;    INV; 5159 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-621_AA_;
KW   Gypsy-621_AA-LTR; Ty3_gypsy_Ele43; Gypsy-621_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5159
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3937-4404] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..1473
FT                 /product="Gypsy-621_AA-I_1p"
FT                 /translation="MRLSAGTDQVSESGFNQAGSSSSTMRVDSSMLSTMNN
FT                 WTLGTLNIPECAPSSGETEIDKQAFEYWKDILVSSLQLINAVDEQTKFGVF
FT                 KIKSGPKLREIFQATTSSPGMPDERTEPFSNAIARLDEYYGSRTYTLSQRG
FT                 KLMMMSQMDSESSINFVRRVGTAAKLCSYGPDEEMEAVVRVLTKNANDPRV
FT                 RVLAHRNWVKQGSMKDLIDLVRDREIEKSNEEEFQRTRQTLRVSAISQERS
FT                 EFRGHRESFNSNWHPRGNYRGNRRYGRGGRGAVRGNLRQQAATNCWRCGSA
FT                 FHRAPACFAIDKECRVCGRLGHIARACSARGSSNQFENQTRGLKRIADQED
FT                 SSVEKKIAAIEDTKAEPFDQKVREEDDLE"
FT   CDS           1629..3848
FT                 /product="Gypsy-621_AA-I_3p"
FT                 /translation="MYATLQKSRFGSMKSKHAQPSMNALQGNQLINDNGAI
FT                 IEAKVAGVRVQFLIDSGAHVNTITKTTFDEIMSEKNAASRIVGMNFKTDKP
FT                 LKAYATNAQITVIANFFAELYISEDRPVMVEKFYVVDEKRALLGFNTAIRY
FT                 CVLDIGLDVPIRHHRLMSSRCEANSINYAQQVSLSEQFPKFNIPAVSLKYD
FT                 KEMPPARNVYTHIPAAFKEATKQKLKDLLSTGIIEEVTSDMDRSFCSSLLV
FT                 VPKGKEDIRLVIDLRGPNRCIYRTPFKMPTFESIIMDLHGAKYFSTIDLTS
FT                 AFHHIELNEDSRHLTNFFSGDGLYRYCRLPFGLTNAPDIFQEVLQTVVLAG
FT                 CEGVVNYLDDVMIFGSTKEEHDENLARVLECFKNHNVMINQAKCAFGKRSV
FT                 DFLGFVVSDKGWKIEDEKISAIQNFRTPETLAEVKSFLGLINFVEKFIPQR
FT                 ADKTRRLRELAKADVFYWNQELEDEFEFVRTKAWKAIQTLGYFKREDQTEL
FT                 YVDASPYGLGAVLVQFDENSKPRVIACASKSLTDTERKYPQTQKEALAMVW
FT                 GVERFSMYLMSINFIVRTDAESNEFIFGGLHRIGKRAVTRAESWALRLQPY
FT                 NFKVCSIPGTMNVADALSRLVQQAQSTESFDEEADEKHLLFYIDAGAMEIC
FT                 WDEIELLSEDDDELTRVRTSIETDQWETGLKKYESEAKGLTTLGCMVFKGD
FT                 KIVLPDALRTKAIRIGSSGSHGRWFNQKDNTAAFLVARHE"
FT   CDS           3790..4983
FT                 /product="Gypsy-621_AA-I_2p"
FT                 /translation="MGVGSTKRIIRQHFWWPGMSRAVENYIKNCETCLLLS
FT                 KKNPPVPLTSRDLPNGPWEILQIDFFSNNEFGFGEFLVVIDIYSRYLHVLE
FT                 MRRIDADSTIEALNKIFAVWGYPLTLQSDNGPPFQSDKFVETWENRGVKIR
FT                 KSIPFSPQSNGAVERQNEGIKKALAASKLDNMNWKIALNNYVHMHNKVRPL
FT                 SRLGVTPFELLVGWKHRGTFPGLWKIDSQSEVDREDVREKDALSKLISKNH
FT                 ADFRRGAKHSDLSVGDKVVLSQIKRNKSDPTFGSEKFTIIARDGSKLIVQS
FT                 DRGVIYSRNVADAKRAIDHITDEQTSQSQDASTSTQITLASKFFFLIFSLA
FT                 HDLVLTINVYVDEPQPDPKRNTVCPIDGNRILNETNETGCTRNGKVQLNAL
FT                 GDVF"
XX
SQ   Sequence 5159 BP; 1639 A; 1005 C; 1199 G; 1316 T; 0 other;
     atggtgcggt ggacgaatca gctcccccaa agtaagtttt atctaaaaaa aaaaaaaagg        60
     cgaactctga tggagatagg cagagtttcg cgtaatatag aaggggctcc ggtggagata       120
     gacggagcac ccatgaagtt taatagctaa agcatgctct ggtggagata gacagagtat       180
     ttgcaagagg agctccgatg gaaatagacg gggctcatat aatgttttta ttaaagattt       240
     attctctgac agaatattgt tttctgcttc gtttttcaca ggaaaatctc cagaaaacgt       300
     attctacgag aactgaaaga agctgtcgaa aggaatacta cattgcgaga acaaattatg       360
     cgactttctg ctggtacgga tcaagtttcc gagagtggat ttaaccaagc tggctctagt       420
     tccagcacca tgcgagtaga ctcgtcgatg ttgtccacaa tgaacaattg gacactcggc       480
     acgctcaaca taccggaatg tgctccgtct tcaggcgaaa cggaaattga taaacaagca       540
     tttgaatatt ggaaggacat tcttgtttct tctctgcagc ttattaacgc agttgatgaa       600
     caaaccaaat ttggtgtgtt caagataaaa tcaggaccaa aactgcgaga aatattccaa       660
     gcgactacct catctccggg aatgcctgat gagcggactg agccattttc aaatgcaatc       720
     gctcgtctcg atgaatacta cggatcaaga acttacacct tatcccagcg tggtaaactc       780
     atgatgatga gccaaatgga ttcggaaagt agcataaatt tcgttcggcg cgtaggaaca       840
     gctgcgaaat tgtgtagtta cgggccagat gaggagatgg aggctgtggt acgagtactt       900
     acgaaaaacg ctaatgaccc acgagtacga gtactagcgc accgcaactg ggtaaaacaa       960
     ggctcaatga aggacctcat tgatcttgtc cgtgatcggg agatcgagaa atcaaatgaa      1020
     gaggaatttc aaagaactcg tcagactttg agagtatcgg caatttcgca agaacgatca      1080
     gagtttcgcg gacatcgtga atctttcaac tctaactggc atcccagagg aaactatcgt      1140
     ggcaaccgtc gctatggaag aggtggtcgt ggagcagtaa gaggaaatct gcgtcaacaa      1200
     gcggctacaa attgctggcg ttgcggcagc gctttccatc gggctcctgc ttgcttcgcc      1260
     atcgataagg aatgtcgtgt ttgcggacgc cttggccata ttgcgagagc ttgttcagct      1320
     cgtggctcgt ctaatcagtt tgaaaaccaa accagaggac tgaaacggat tgcggaccag      1380
     gaagattcaa gtgttgagaa aaagattgct gccatcgagg atacaaaagc tgagcctttc      1440
     gatcaaaagg tacgcgaaga agatgacctt gaatgagcaa taaaattaat aattccttga      1500
     tattccttta acatgtatgt gctgtatcta ataagaactt tttgctttgt atgaacattt      1560
     gaattgaatt ttctattgtt aacattgact gatttttata ataaactgat tggaaactta      1620
     ataaaattat gtacgctaca ttacagaaat cacgtttcgg atcaatgaaa tcaaagcacg      1680
     ctcagccatc aatgaatgca ttgcaaggaa accaattaat aaacgataat ggggcaataa      1740
     ttgaggccaa agttgcaggt gtgcgggttc agtttctaat cgactctggt gcccatgtaa      1800
     atacgataac aaagacgaca tttgatgaaa tcatgtctga aaaaaacgct gcatctcgga      1860
     ttgtaggcat gaatttcaag accgacaaac ccttgaaagc atatgccacg aatgcccaaa      1920
     ttacagtaat cgccaatttc tttgctgaac tgtatatctc agaggacaga ccagttatgg      1980
     ttgaaaagtt ttatgtagtg gacgagaaaa gagcacttct cggcttcaac actgcaatca      2040
     gatattgcgt tcttgacatt ggcttagatg ttcctattcg ccatcatcga ctgatgtcca      2100
     gcagatgtga agcaaactcg atcaattacg cgcaacaagt atcactttct gaacagtttc      2160
     cgaaattcaa tatacctgct gtctcgctaa aatacgacaa agaaatgcct ccagcccgaa      2220
     atgtctacac gcatataccg gcggcattca aagaagcaac aaaacagaaa ctaaaagatc      2280
     tgttatcaac tggtatcatt gaggaagtaa caagtgatat ggaccgatcc ttttgctctt      2340
     cgctattggt agtacctaaa ggcaaagaag atattcggct agtcattgac ctacgtggac      2400
     cgaatcgttg tatctaccgc acgcccttta aaatgcctac tttcgaatcg attattatgg      2460
     atctgcatgg tgctaagtat ttttctacaa tagatcttac aagcgcgttt caccatattg      2520
     agctaaatga agactcacgt cacctcacaa actttttctc tggagatgga ctgtacaggt      2580
     actgcaggct accttttggc ctcactaacg cccccgatat attccaggag gtgctacaga      2640
     cagtcgtcct tgctggatgc gaaggggtcg ttaattatct agatgatgtc atgatcttcg      2700
     ggagcacaaa ggaagagcac gacgaaaatt tggctcgagt attggagtgc ttcaagaatc      2760
     acaatgtaat gattaatcaa gcaaaatgcg catttggaaa acgttccgtt gattttttgg      2820
     gattcgtagt gtccgataaa ggatggaaga tagaagacga gaaaatctca gcgatacaga      2880
     acttcagaac cccggaaact ttagctgagg ttaaaagctt cctaggtcta attaactttg      2940
     tggaaaagtt tataccgcaa agggcagaca agactcggag acttcgtgag ctggccaaag      3000
     cagatgtatt ttactggaat caagaattgg aggatgagtt tgaatttgtc aggacaaaag      3060
     cgtggaaagc aattcaaacc ttgggttact tcaaaagaga agaccagacg gaactttacg      3120
     tagatgcatc tccttatggc ttgggagccg tgctggtaca gtttgacgaa aattctaagc      3180
     ctagggtgat agcatgtgct tccaaaagtt tgacggatac ggaacgaaaa tacccccaga      3240
     cccaaaagga agcattagca atggtctggg gagtagaaag attttccatg tacctcatga      3300
     gtataaactt cattgtgagg acagatgcag agtcaaatga gtttattttt ggtggactgc      3360
     ataggatcgg caaaagggcg gtaacacgtg ctgagtcatg ggcgttacgg ttacaaccgt      3420
     ataatttcaa ggtatgcagc attccaggga ccatgaatgt agcagatgcg ctatcaagat      3480
     tggttcaaca ggcacaatca actgagtcgt ttgatgaaga agcggatgag aaacatttac      3540
     tgttctacat tgatgctggt gcaatggaaa tatgttggga tgaaatagaa ctcctatcag      3600
     aggatgacga tgaattgaca agagttagga cgtcgattga aacagatcag tgggagactg      3660
     gactcaaaaa gtacgaatca gaggcaaaag gactaacaac acttggatgc atggtgttta      3720
     aaggtgataa aattgtgctc cctgatgcct taaggactaa ggcaatacga atcggctcat      3780
     cagggtcaca tgggcgttgg ttcaaccaaa aggataatac ggcagcattt ctggtggcca      3840
     ggcatgagta gagctgtaga aaactacatt aaaaattgtg agacgtgcct tttgctatcg      3900
     aaaaagaacc cgccagttcc tctcaccagc agggatctcc caaacggtcc atgggagatt      3960
     ctacaaattg atttttttag taacaacgag tttggattcg gagagtttct tgtggtaata      4020
     gatatctact cacgttatct gcacgttttg gaaatgcgcc gcattgatgc agactccact      4080
     atcgaggcat tgaacaaaat atttgctgtt tggggttacc cgctaaccct gcaaagcgac      4140
     aacggtcctc ccttccaaag cgacaaattt gtggagacct gggagaacag aggcgtcaag      4200
     attcggaagt caattccctt cagcccacaa tccaatggcg ctgtcgaacg ccaaaacgaa      4260
     ggcataaaga aagcactggc agcctctaaa ttggataata tgaattggaa aattgctttg      4320
     aataattatg ttcatatgca caataaagtg cggcccctat caagactcgg cgtaacgcca      4380
     tttgagttac tcgtgggctg gaaacataga ggaacgtttc ctggcctgtg gaaaattgat      4440
     agtcaatcgg aagtagatcg tgaagacgtc agagagaaag atgctttgtc caaacttatc      4500
     agtaagaatc atgcggattt tcgaagagga gctaaacact ccgatctctc ggttggagac      4560
     aaagtagttc tgtcacaaat caagcgaaac aaatcagatc ccactttcgg atctgaaaag      4620
     tttacgatca tagcgagaga tggatctaaa ttgatcgttc aaagcgaccg gggagtaata      4680
     tactcaagaa acgtagctga tgcaaagaga gcaattgacc atataactga tgagcaaact      4740
     tcgcaaagcc aggatgcatc aacaagtacc cagataactc ttgccagtaa gttttttttt      4800
     ttaatttttt ctctagctca tgatcttgta ttaacgataa atgtttatgt agatgaaccg      4860
     cagccagacc ctaaacggaa cacagtctgt cccatagacg gaaaccgtat attgaacgaa      4920
     actaacgaaa caggatgcac gagaaatggt aaggttcaat tgaatgcgtt aggcgatgtt      4980
     ttctaataat aatgtatttt ctacacagat atctctccac ccaaacaaca aacgcagaaa      5040
     cgagccgggt atggtgattc cactagacaa cgttcaagac gagaaataag gattccggag      5100
     aagctgaaag atatggtttt gtataacatt tatgaatgaa gagtagaggc gggatgaat       5159
//
ID   Gypsy-621_AA-LTR repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-621_AA_;
KW   Ty3_gypsy_Ele43; Gypsy-621_AA-I; Gypsy-621_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-928
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 928 BP; 291 A; 172 C; 220 G; 245 T; 0 other;
     tgtagagaca ggataaacaa aatataaatg ttggaataat attaataatt aaaaaaaata        60
     tgtaatatga ttattctaat tcagaacatt cgtttgaata tatgctctag gaaataataa       120
     taatgcataa attttcaaat aaatgaatat ggtaacttta tatatatata ttaaaaaaaa       180
     aaagaaaaca gaaaacaaaa attgaatcga atttcaattt tgtcgacgaa agagaaaaca       240
     atgaacatcc ctaattccat tgacttctac catccactca ttggttcagg gtcgcgcggt       300
     gtttattggt taaaaaaaag gagaagggga gatgatgcaa tcgcgacttc actactagta       360
     taaatagagc accgcagaaa gatttcagtt cactttttcg gcggacgtgt tacaagtcac       420
     atcagcagca gcagtaacca gttaaagaag cagctccgac agtaagacga atagctttcg       480
     cttgttggca tcgatccgga agaagcagca gtcaccgttt gagagtgcgg tcgactgttt       540
     tgcttgcggc atccgacaat aagacgctag cgagtggcat cgctttcgcc tgttggccac       600
     gatccggctg taagacggga gtgagtggca tcgctttcgc ttgttggcaa cgatccggaa       660
     gaagcagcag tcaccgtttg agagtgcggt cgactgtttt gcttgcggca tccgacaata       720
     agacgctagc gagtggcatc gctttcgctt gttggcaacg atccgactgt aagacgggag       780
     tgagtggaat cgctttcgct ggtcggcaac gattttgtca ggtggaaact atcggaagtg       840
     gattccgtta gctactttgc ttatcagcaa ctgcctggaa gtaacatggc agatctacca       900
     ggttttgaga atttggccgg tcgcgaca                                          928
//
ID   Gypsy-622_AA-I repbase;    DNA;    INV; 8370 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-622_AA_;
KW   Gypsy-622_AA-LTR; Ty3_gypsy_Ele157; Gypsy-622_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8370
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [4552-5031] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           489..2411
FT                 /product="Gypsy-622_AA-I_1p"
FT                 /translation="MNRSLPRAEDLNLEEIDYELSIRNQPEEVFKLDVQGK
FT                 QRHLRLLFKSDQKEGRNYRSNTNIQDEAGHISARIDNLEKALSKKVEAKYE
FT                 SRVIHYYYRVKRCIADTEEGKELRRELSRRIEKLMQYYQFGPSLSPFKEPS
FT                 IPIIQETEGAVGLSGPVSPSRTMGEPASDSMLETGPKGRCEMSNSQGTIPK
FT                 VNRSDFRLQERTDQNGIKDTIEVSRTEWEELKRILADLSNKANADNAANMV
FT                 SRPRIPENRQTFPQNNPRTQQRQTGLRSTCYADEFVDTDSDEEEFATVQQN
FT                 RLDRRVDRNQFERDSYEDSLYEYDSGSTRRYRHRRGIRDGRHRREQGYGRV
FT                 EKWKLRFSGDSRGISVENFLYKASKLAEREGVSEHTLLRDIHMLLEGAASD
FT                 WFFTYVDDLITWEDFKNGITYRFGNPNKDQGIRSKIQERKQQRGESFIAFV
FT                 SEIEKLNRMLSKPLSRRRKFEVIWDNMRQHYRSKISIVRVRDLQHLIDLNY
FT                 RIDAADHQLHQPGVDHFVRRPINQIEAAEYVSEDEEEQEATVNHVRGQHQR
FT                 SRPPASRPFSGPTQQVQGNRQAENGEPGLARLSCWNCQEEGHGWRQCTKPR
FT                 NIFCYGCGNLGRTIRSCERCVRQEVVPESGIQGNLRRGASQGN"
XX
SQ   Sequence 8370 BP; 2385 A; 1752 C; 2011 G; 2219 T; 3 other;
     tttggcgccc aacaatacca ggcattttct gattttggtg taactgtatc tgataattat        60
     cttttcgtat taatatagta tttgtgtgtt tagttgtcta agggaacaag acttgtttaa       120
     tttatttttc ttcgaggaac tttctcttat attgtacata taaataatat tgagtattta       180
     tttctgtttc gtttcgttta tttcataaaa cgtttgattt gcacaattac gtatcataca       240
     aaaaaaatct cgttcttatc attaagctta tcttatatgt gatttaatta ttttctagtg       300
     ttattaaaat tgttttcttc aatatttgtt ttgctaaatg ttatttatga ttttatagct       360
     gtttaaacaa aaatagcttc tctgggaaca ttacatcaaa actcaaatat tctgaatcac       420
     gattttgcgg ttgaataggt gacctttttt ttcttctggt ttaagcaaac atacatagat       480
     cgatcaatat gaatcgttcc ttaccaagag ctgaagatct caaccttgaa gagatcgact       540
     acgagttgtc gattcgcaac caaccagaag aagttttcaa actcgatgtc cagggaaaac       600
     aaagacattt gagacttctg ttcaaatctg accaaaagga agggaggaac tataggtcaa       660
     ataccaacat tcaagacgaa gcgggtcata ttagtgctag aattgacaat ttggagaagg       720
     ccctgtctaa aaaggtagag gccaaatatg agtctagggt gatacattat tattatcggg       780
     tgaagagatg cattgcagac acggaagagg gtaaagaact gcgaagagaa cttagccgta       840
     gaatcgaaaa acttatgcag tactaccagt tcgggccatc cttgtctcca ttcaaagaac       900
     catccattcc tattattcaa gaaacagagg gggcagtagg tctatcaggt ccggtcagtc       960
     caagtcgaac aatgggggaa ccggcgtccg acagtatgtt agaaactggt cctaaaggca      1020
     ggtgtgaaat gagcaactcc caagggacaa ttccaaaagt caatcggtca gatttcagac      1080
     tgcaggaacg gacggaccaa aacggaatca aagataccat cgaagtatct cgtacggaat      1140
     gggaggagct gaagcgaatt ttagccgatt tgtcaaataa ggctaacgcg gataatgcgg      1200
     cgaatatggt gagtagaccg cgaattcctg aaaatagaca gacctttcca cagaacaacc      1260
     caaggacaca acagcgccag acaggacttc ggtcaacgtg ctatgctgat gagttcgtcg      1320
     atacggattc agatgaggag gaatttgcca cagtgcagca aaacagattg gatcggaggg      1380
     tcgatcgcaa ccagttcgag cgtgatagct acgaggattc gctgtacgaa tatgatagtg      1440
     gaagtacgag acggtatcgg catcgacgag gaatcagaga cggccgacat agacgtgagc      1500
     aaggctatgg gcgagtagag aagtggaagc tgcggttctc gggagactct cggggaatat      1560
     ccgtcgaaaa cttcctttat aaagcatcaa aactagctga gcgcgaaggc gtatccgagc      1620
     atacattgct aagggacatc cacatgctgt tagaaggagc cgcgtcagac tggttcttca      1680
     cctacgtgga tgacttgatc acgtgggaag acttcaagaa cggaatcacc tatcgcttcg      1740
     gtaaccctaa caaggaccaa gggatacggt cgaagattca ggagcggaaa caacagcgag      1800
     gagagtcgtt tatagctttt gtgtcggaga ttgagaagct aaaccggatg ttgtccaagc      1860
     cattgtctcg aagacggaaa tttgaggtca tatgggacaa catgcggcaa cattataggt      1920
     ccaagatctc gatcgttcgc gtaagagact tgcagcatct aattgacttg aactaccgca      1980
     tcgatgcggc cgatcatcaa ctacaccaac cgggggtaga tcatttcgtg cgtagaccaa      2040
     tcaatcagat tgaagccgca gaatatgtca gcgaagacga ggaggagcag gaagcgacag      2100
     tgaaccacgt taggggacaa caccagagaa gcaggccacc ggcgtcccgg ccgtttagtg      2160
     gtccaacgca acaggtgcaa gggaatcgtc aagcagagaa tggtgaacct ggtttggcga      2220
     gattaagctg ttggaactgc caagaggaag gacacggttg gagacaatgc acaaaaccgc      2280
     ggaacatctt ctgttacgga tgtggcaatc ttggaaggac gattcgctct tgtgaacggt      2340
     gcgtcagaca agaagtcgta ccagagagtg ggatacaggg aaacctgaga aggggtgcga      2400
     gtcaggggaa ttgagcatcc ctgcatcaca cgttcttccc caaacatttg acccgttttt      2460
     gcatgttcac catatacgaa ttagaataag caagtgtcct cacattagag tgagaatttt      2520
     cgattttgag acagaagctt tgttggactc cggggcaggg attagtattt taaattcaat      2580
     ggaattgatt gagagatttg ggttgaagtt gcagccggca gccattcggg tggccactgc      2640
     tgatggtgca aattacgcct gtcggggctc cgtaaacatt ccgtttacct acaaacggtc      2700
     acaaggtgat tccgacaatc gtagttccag aaatttcgcg ggaaattatt ttgggagcgg      2760
     acttttggga cgcgtttgga atcaagccaa tgatcgacct gggtagaggc ccagagtccc      2820
     tggaaacggt agcaagtcag caaaacgacg ctatttgttt caccgttgaa ccggtagacc      2880
     aattgccgga ggcggccaag gaagatgagg atgacacgtt ggacattcca gtgtatgagg      2940
     ggccaacaga agcaatcccg gatccagaat ccatagaaac cgaacacgaa ttgagtacgg      3000
     aggagaggca acaactgatg gaagtaatca gaggtttgag ttgacttcca cggggaagtt      3060
     aggtagaacc gatctaatcg agcacgaaat cgtgctgaag gaaggtgcaa agccacggaa      3120
     cccggcgatg tacaaatgct caccgtacat gcaagaggcg ataaagaaag aggtggagag      3180
     gttcaagaca ctggatgcaa tcgaagaatg ctacagtgag tggaccaccc actagtgcca      3240
     gtaccgaaga agaacgggaa ggttcggtct gcctgattcc aggaagatca acaaattgac      3300
     ggtaaaagac tcctacccta tgagaaacat gcaggacatt tttcgtcgtc tgggtagagc      3360
     aaagtacttc tcggtcatag acctgaagga tgcctacttc cagattccgt tgaaggaaga      3420
     gagccgaact acacggcatt cagaacatcg gaaggcgtct tccgcttcaa agtgttgcca      3480
     ttcggggtca tcaacgcgcc gttcaccatg tcacggttga tggacagagc acttggattc      3540
     gacctcgaac cgcaggtgtt cgtctacctc gatgacatag tcatcgctac cgaaacccta      3600
     gaggagcacc ttcgactgct aaaatagtag gggagcggct acgcaaagcg ggactacgat      3660
     ttcgttagag aaatcacgct tctgtcggaa gcaagtgatg tacttgggct atctctgaac      3720
     gagcatggga ttgcgattga cagtagtcga atccaaccaa ttttagatta tgcgagaccg      3780
     aagacgcagg aggacatccg cgcttgatgg gcttggcggg gttctaccag cgctttatca      3840
     aggactacag tagggtgact gctccaataa ccgatcttct cacgaaagaa aataagaaat      3900
     tcacttggag caaagaagca gaagaggcgt ttcgagagct caaatcaatt ttgacctcag      3960
     cgccaattct agggaacccg gacttcagca aggtttttac gattgaatcc gatgcttcgg      4020
     atagagcagt aggtgccgct ttggtgcagg agcaggacgg agttactagg gtgatcttca      4080
     gcaagaaact gaatcgtact caaaggcggt actccgctgt ggagaaagaa tgtctggggg      4140
     ttctctcagc gattcaacac ttcaggcatt acatcgaagg cacgaaattc cgagtcgtta      4200
     cagacgcgag aagtctctat ggcgggatta atacctacga tcgagatcaa ggaagcgatt      4260
     ggaggtcact tgcgaccagt ttaggaagat gtttcctgaa atcaaccaac cgattaagcg      4320
     accctcgatt cgcgtggaag caatatcctc cgtagcggaa cgagagcaga tcttgaaaag      4380
     aacccacgag aaagctcact tcgggtacga caagacgttg aacgaggtaa agcagagata      4440
     ctttggccga aaatgaatag tgacgtccgg aaacattgcc gtgaatgttt gaaatgtcag      4500
     gtcagtaagt cgggtaacac gaatgtgaca ccgccgatgg gatcaaagaa gcctgtcgaa      4560
     tacccatggc agttcgtgac gttagattat gtcggaccat tgccaccgtc cggcagaaat      4620
     agacatacgt gcctactcgt agccaccgac gtgttcagca aattcgtact agtgcagcca      4680
     ttccgagaag caaaagctag ctcattggtc gaatttgtcg aaaacatgat ttttcgcctg      4740
     tttggagttc cggaggttgt tctgacggat aatgggtctc agtttatttc gaaacaattt      4800
     agagagctgt tggaagcgta ccatgtttcg cattggctaa caccggcgta ccaccctcag      4860
     gtgaacaaca ccgagcgagt gaaccgcgta atcacgacag ccattcgcgc cacgctgaag      4920
     aaagagcaca agcactgggc ggatgacatt caggagatcg caaacgctat ccgaaacgcg      4980
     attcacgaat ccacaaagta cagtccctat tttatcgtat ttggtcgtaa catggtatct      5040
     gatgggagag agtacggtcg gataagggac aactatgagt ctaccggcga taatgaggat      5100
     ttgacagtcg aacgacggaa gaaactgttc gaggacatta agaccaacct gactacagcc      5160
     taccagcgac atgcaaagac ctacaacctt cgatccaatk caaattgtcc cacctatgcg      5220
     gtaggggaaa aagtattaaa gcagaccttt gacctgtctg ataaggggaa gggtttttgc      5280
     aagaaacttg cacccaaata cgaactggcg gtagtacgga aaaggttggg aactaacacc      5340
     tacgagttgg aagatttgac ggggaagcga ttaggggtct atttcgcgac cagtttgaag      5400
     aagatgcttc ctcatctaag ccaatcgtag gcgcactatt gtagagctat gaaactcctt      5460
     tcgagtgacc ataaatcgtt agatgaaaaa acaccttcgg gttcaaacat cgtacggatg      5520
     atgctcgatg gactcgctct tggaacgttt tcgaaccgac cagtgctgag ggtaccgaca      5580
     ttaagcctaa aaattctaaa ccctactttg tagagctatg aaactccttc gagtgaccac      5640
     aaatctactc agatgtaaaa acaccttcgg gttcaaatat catacggaca atgctcgacg      5700
     gactcgccta cggaacgttt tgaactgacc agggctgagg gtaccgacat tgggcctaac      5760
     acattccaac cagtttgcaa gctatgaatc gaaagtgacc acaacgaaca aatctatcaa      5820
     aacaccatga agggcaaagc aatcaagtcg ttaaattcca attaagacgc gaaaaccgat      5880
     tgggacaaga ttccaattgg aatacattcg cctatgcgaa ctgtatatat gtaaatatta      5940
     gtagattagt ttttcctagt tccctagccc ttaatctagt attagtactt agcttagatt      6000
     agtaaattaa cttaaataac tcacgattat attccttatt ccattgatta gcttattttt      6060
     tcatgttgaa ggcattcgtt atctcaagtt gttccattgc attcgttttc gtcttaccgg      6120
     cgatgtaaat aatgtaaata cctaaaagtc gaaatawttg tttagtttgc gttcatacag      6180
     tagtaaagtt taattagctt agatgaataa ttaccttatt aaagttcgtt gtagtcattt      6240
     ccgttcattg tagatttggt cactttctca ttcgtttcct tttcccacgt ccatcattcc      6300
     aattagaatt gctccttgtt tacgttcacc tttgtccacc ttattttttc ctagtttcga      6360
     tgttcctctt cccgttgtcc agtccaatcc tttccagtca cgatcctccc gtcgcaaacg      6420
     ttgaaatctt ccactcgtta gttcccagct tttccatttt ccgattcggg cagttccgca      6480
     gttctccgtt agcagccggg ggcaatcgca aatgcacctg tggaaaaaaa caaacaaaca      6540
     aaccaactta cacccgataa tttggaacaa tattgtgttc cactctcctt atacttatcg      6600
     gaacgtcccg caggacgtcc accgatgcac tccaagccat ttcagcacta attttcacga      6660
     tttttatcac taattttccc gattttgcac tgtatcgccg tgccacgcgt gcgcgatcca      6720
     ctttcacttt ccgtcttgtt gattttgaca gttctttgtt gttgacatcg cgtgtatgat      6780
     agaccggtca tgtttcgagt gtgagtgtgt cggagttcga caggagtcgg attctggtac      6840
     acattattgt atgcaaggta tgaatgattg gatggtttta tagtgagtat gtgttattct      6900
     tgaagagctt tcgcagtcgg tttgacctgg cgtttgaaat ctcttttaag gagctttttc      6960
     gtttcgtgtt tcagtaagcg catatcgcgg atgcatttcc gtggctgcaa actgaaaacg      7020
     aaacagttta ttttaagata aggaagttgg cgtctcgcgt ttctcgctac gtgctggggt      7080
     agagatggtc aatggactta tcggtttcgt ccacttaggt ggaaattttc gtgaatgtcg      7140
     tcttcgatta tcggcaatgt cctggtgtat gaagacaatg tttcgttatt tgtgtgcgct      7200
     tgctcagagt attgtcgaca actctcgagt ttaagccgtt tatatgtttg tgttttcgaa      7260
     tttaatgtga atgaatgagg tcatcaacaa acttccggtc aattgaacag tttcctttct      7320
     ctcaataaag tcaaggtttt ctgggacatc gagtatttct ggccacccct gttagtttta      7380
     ttcttcaata aacaagcttt ttggttacat tatgtttaga ttttcgctgg agaccggaga      7440
     cttacgtcgc tgatggtcag tggcagacag gttctgtgat ggatcctgat ctgtaaatag      7500
     agatggagtt gacctcggtc gacgatgatc atatatgacc ccgaaaatcg atagtagtgt      7560
     tttctgagac gacttgtttg gcctacgaaa atttgattgg ctattttcat ctccattctc      7620
     aatgccaatc aaattttcgt aattttagtg gggaatgatg taacaagtac gctttctaat      7680
     ttaagattta tccctgtaat atattgatta aatgtttcca aattaaatag ctctgcatgt      7740
     ccgttcgttt tttctcaata aatcagaaat aaattcaccg cattagatcg tcccttctgt      7800
     agagttacca ttggcatacg cttgcataaa tgagttccct acagcagtta cacgcgccta      7860
     agaaaagaac ccaagccagc ccaaattgtc aacgcgcgca tatttgcgat gtctctcggc      7920
     ggacatcgac ctgccaaaaa tcctttcagg atccaatgac ctttcccgtt cggcttggca      7980
     cactcctacc gaacttgggg agagaatttg ccttaacgtg ctaatgcggc cgttggaaag      8040
     agaggtcgca atgccattga agtttcgggt ccaaattttg agaattttgc actcgcgaaa      8100
     ttggacttcg tcccatttcg cgacctcgaa gccgaaggtc amaatttagc gggtatctga      8160
     ggacaattcc cagccttgat cgtccacttc gtttcgaact gtggaagagg caagagtggt      8220
     tgattacttg tcccgcgtcg tggtgtgttt gataaggtgt gaaattcgag aattctagta      8280
     ggccccagta gctagttcaa ttgctcaagg ctagtaggat ttcctcgttt gggaatagtg      8340
     cgtgtgtagt tatcaagaat atgggattcg                                       8370
//
ID   Gypsy-622_AA-LTR repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-622_AA_;
KW   Ty3_gypsy_Ele157; Gypsy-622_AA-I; Gypsy-622_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1266
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1266 BP; 325 A; 317 C; 322 G; 302 T; 0 other;
     tggcagcagt ggccattgcc ggcacaccac catccaccag aaacccgctc ttgaccccac        60
     cgttcgactt cggaggattc ccggggcaca cgtgaccgga agagggttgc gccgcgccat       120
     tctgcgcgcc ctagacaggc aggccgccat taccgtacca gtatcgtcag cgtcagcaag       180
     ttcataccgt gacatcaacc caaccgccaa gaaggaggga gacgaacgaa cgcacgtgcc       240
     gcgtttgcgc gtaagtccgc ggatccagta aggaccaacg gaatggaccg ttgatcgcat       300
     ccgcgatcgt gtacaggccg gagcagatgc caacgcagct ccgtgtccac cgctagtcca       360
     cccccaccat ccgtaattcg cccgccactc gtaaatccat ggtagagtaa gtaccaggca       420
     tgcatgtttg ttcgttgtgt cgtccatgcg catgagacag aacggcacaa atcgatagcc       480
     cgtagccgtc tcgaacgtta tttgtcaatg attcattgag cacattatct acccaataca       540
     ccgaaaccca cacccgtagc caccaaacac acacgcagga gaagagtccg tgcacggcaa       600
     gcgccgtcga agagaaggaa tgaagtagga gagagtaaat gcacgttaga gtagaggaaa       660
     gggaacagaa ggcctaggca aacatgtaga gggagagcgt tttgtaaata tatttatagt       720
     aaaccgtatg cgttattcgt tacagctttg cgctgagctt ttatagctaa gttttgtgtg       780
     caataaatgt tgtcagtggt tcccaatcta aattgtttga tgtagtcagt tgaagaaatt       840
     agtgtcttgt gagggatttt catgtagttc gttttcgttt cgcttttctt gtagtttgtt       900
     ttactgggta agtcggcccg aaatcgacct ttaaccattc tcaaattgga aacagtttgg       960
     aatggagtga cgttcatact gggccagtga tgagaacacc ccgctccagt gattaaggtt      1020
     tcttagaatt ctaggaattt gtatttggaa cttcagtggt attgatggcc tttagcctct      1080
     accgagaagt acaacggcta atttaacgca gccagtcagc tttcttccca agttctttaa      1140
     aattaacccc tcccttgaag ggtctcaggc cgggcaaacc tgcaaactgc tgggtggtct      1200
     ccttttagga gtggcgctaa agccatccac ttacgaacgg gaagcgcgac gggctggcgg      1260
     gttaca                                                                 1266
//
ID   Gypsy-623_AA-I repbase;    DNA;    INV; 6325 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-623_AA_;
KW   Gypsy-623_AA-LTR; Ty3_gypsy_Ele125; Gypsy-623_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6325
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [5208-5696] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1084..2439
FT                 /product="Gypsy-623_AA-I_1p"
FT                 /translation="MNITENRFIIDEGMKSLNNILRNLNKAPNRKYRQFTL
FT                 KQKLNHAKLNYGRITDALAKIETVIEESELLFLTKGARQVYSDIHILISTK
FT                 LEFAAIHEISIFSLGYAILFINKLKSKISPKMAKVDIKTGATLIHVYDGNP
FT                 TNLDTFLDSVALFADLVDNDNAAASQDVKNAAKATALRFIKTRLTEAARQA
FT                 IPENATLDQLIDALKANCSPKTTADNVLAKLKSTRQSTSAEAFCTEVEKLT
FT                 QELKTIYIRNRIPADVATQMATKSGVDALIAGTKNSETKTILRAGTFTKIN
FT                 DAIQKLHENDATQKVQGSHSEDRAKSSNGIQAQMFMANRNQYRGRGRGSNL
FT                 NYGRGNYNSYNRYGGNWRNNNFNHPQHYQPRFQNTRGQGNYRGQWNHRGRP
FT                 SIYLMQPNPQMMNQSVQQQPLAQQMQQNTQQSIMPNQNLQNNQTQMPNQHF
FT                 LGTPFGR"
FT   CDS           2850..6041
FT                 /product="Gypsy-623_AA-I_2p"
FT                 /translation="MLFLPSRHEVTRYIPGMQLQEDMVVYSQEIQPGIFCG
FT                 NTIISAKEPIFKFINTTNDVAYIAYATFKPKMQPLKNFHVCKPKKANKTQS
FT                 ERRAKILSEVNMHEIPTYARNDFEKLITEYEDTFCLPDEILTFNNFYKQNI
FT                 NLNDNVPVYIPNYKTIYSQGEEMERQVQKMLQEDIIEPSVSSYNSPILLVP
FT                 KKSENNDKKWRLVVDFRQLNKRVLPDKFPLPRIDSILDQLGRARYFSTLDL
FT                 MSGFHQIPLEENSRKFTAFSTNSGHYQFKRLPFGLNISPNSFQRMMTIAMA
FT                 GLTPERAFVYIDDIVVIGCSLNHHLQNLRSVFERLRKYELKLNISKCKFFR
FT                 TEVTYLGHKLTDKGIIPDESKYETIKNYPIPKNADDVRRFVAFCNYYRKFV
FT                 ENFSQIAYPLNQLLKKNTKFNWTSECQHAFNLLRHNLMSPRILQYPDFSKE
FT                 FTLTTDASDIGCGAVLSQATEAGDQPIAFASKTFTQAEKNKPTILKELLAI
FT                 HWAINYFKPYLYGKRFTVRTDHRPLVYLFGMKNPTSKLTRIRIELEEFDFD
FT                 VVYIKGKENVAADALSRIVTTSDMLKAVDVLVVNTRSMTKKNIISNNKKNI
FT                 NENTEIDHLSCYEIENPYEARKLMKLSTEIENNAIKFKILKKDNKTLHAQV
FT                 HEDVRNGSHALVHALPKIEKITKGFKTRKIAMSADDYIFKMVPINLFKLMA
FT                 NKTLKDLQIIIFKEPIFVNNIDDIRNILTNHHNTPIGGHVGQHRLYLRLRG
FT                 KYKWHNMKNSIVQFVKACELCKRNKILKHTIQPMVITTTPSKAFEVISIDT
FT                 VGPLPRTPNNNRYCITIQCDLTKYIEIIPIQNKEANTIARGIVQEFILTYG
FT                 HFTEMRSDQGTEYNNEVIEQISKILEIKQTFSTPYHPQSIGSLERNHRCLN
FT                 EYLRSFTNEHQTDWDDWIKFYEFAYNTTPHTEHGFTPFELIFGKKANLPQD
FT                 IIQTSNEPIYNFDLYKNELTYKLRKSQAIAKEKLIIQKHQRKKQFDNNINP
FT                 LPISINDTVYLKNENRRKLDSFYIGPYQVISISEPNCEIKHVNSGKSLTVH
FT                 KNRLIRA"
XX
SQ   Sequence 6325 BP; 2433 A; 1127 C; 1090 G; 1674 T; 1 other;
     ggaaatggcg accgttccga tcgaacctga tgaataaact tagtgataag tgcatatagt        60
     gaaacccaat agttgaagat gggtaaaaca agttcgaagt cagacgtagt gcataatgcg       120
     gacccwcaag tacgaataat caacaaccaa gaatatcatg ctgaaatgtt acagcagcac       180
     gaaacactaa tttatttgat cctgggcata gtggctactc agttactatt gactctgtac       240
     ttcatgctga agaaacgcga gcgcaatcga gcgttcaaat tggccaaaag tgtgaacaat       300
     ttggcagaag cgtgagtgat agaaaattta aaaaacagaa aagccagtgg aaaaaacaca       360
     acaaatctga tcagtgtacc tgtgccattc atgcaaggag aactgcaatg aaaaagtgtg       420
     aactaaaacc tacaaaatgg caactcttaa tttgctaaaa tcagtgcttg agcaattgga       480
     tattgccagg gaaaggtgca tggaagttga atttgcagtg aatgctaacg ttaagaaact       540
     attgcaaatc ttatcagatc aaggactgtt acaattagtg atctgtaata acgaacaaat       600
     catagtgaaa gtgaacaaag aggcatcaag ttttagtgca ttgtcacaac taatcacagt       660
     aagaagaaca aacttgttac aaatagctgc aaagctggtg ccgactgtga tgggtaattt       720
     actcattttt acaaggatgg gagttatgtc ccaccacgaa gctttacacc aacgtatggg       780
     aggtcaaata attggagtgg ctttctgacc accagtgatc gtgttagata gaagctgtga       840
     ccataattgc gaccgcccac gtttgtttta ttctacacac cgggcgttaa gtgcaaatat       900
     tcacgagaca acacgaatta cccgaagcag tgaaattgag tgccagtgcg tgaggattac       960
     caacgagacg aaccctgatg aagtagtttt gtgtgccgct ccatgccgac tgatacgacg      1020
     actgatgcag ttaaataaca tgtcgctgcc agatgtacca atcaagtaac ataatacaaa      1080
     ggtatgaaca taactgaaaa tagatttatt attgatgagg gcatgaaaag tttgaataat      1140
     atcctgagga atttaaataa agcgcccaat agaaaatata ggcaatttac attaaagcaa      1200
     aaattgaacc atgcaaaatt aaattacggg cgaattacag atgccttagc taaaattgaa      1260
     acggtgatag aggagtcaga attattattt ttaactaagg gagctcgaca agtttacagt      1320
     gacatacata ttttaatatc aaccaagctt gaattcgctg caatacatga aatcagcata      1380
     ttctcattag gttatgcaat tctttttatc aacaaattaa aaagtaaaat tagtccgaag      1440
     atggcaaaag tagatattaa aactggtgcc acacttattc atgtgtatga tggtaaccca      1500
     acaaatttag atacattcct ggattcggtt gcacttttcg cagacctcgt tgataacgat      1560
     aacgcagccg catcacagga tgttaaaaat gctgctaaag ccaccgcact tcgatttata      1620
     aaaacccgac taacagaagc tgctaggcaa gcaattccag aaaatgcgac tctcgatcaa      1680
     ttgatcgacg cattaaaggc aaactgttcg ccgaaaacca cagctgataa cgttttagca      1740
     aagctaaaaa gtacaaggca atcaacttcc gcagaggctt tctgtacaga agtagaaaag      1800
     ctcacccaag agttgaagac tatctacatt aggaatagaa ttccagcaga tgtggcaacc      1860
     caaatggcca ccaaaagtgg agttgacgca ctaattgccg gtacgaaaaa ttcggaaaca      1920
     aaaacaatat tacgcgcagg aacgtttact aaaataaacg atgcgattca aaaattacat      1980
     gagaatgatg caacacaaaa ggttcaggga tctcattcgg aagatagagc taaatcttca      2040
     aacggtattc aagcacaaat gtttatggct aacaggaacc aataccgagg ccgtggacga      2100
     ggtagtaatc ttaactacgg acgaggaaac tataattctt acaacagata tggaggcaat      2160
     tggcgaaata ataatttcaa tcatccacaa cattaccaac cgcgtttcca aaatacgaga      2220
     gggcaaggga actatcgggg tcaatggaac catagaggac gaccatcgat ttaccttatg      2280
     caacctaatc cacaaatgat gaaccaatcg gttcagcaac aacctctagc tcaacaaatg      2340
     caacaaaata ctcaacaatc aattatgcca aatcaaaatt tgcaaaataa tcaaacacaa      2400
     atgccaaacc aacatttttt aggcacaccg tttggacggt aggcactata aatgcagccg      2460
     tctctaatta cgtaaattta tctttagatt tatcagacac tcgatgtacc ttcataatag      2520
     atactggtgc tgatatatct attataaagg caaataaggt gaaatctact caaatttact      2580
     atccaaacga gaaatgtatt atttcaggaa ttggtcataa cggaatttcg tcactaggta      2640
     gcacttttgc taaaatatct attgaaaacg tatcagtaga acagaaattc catatagtag      2700
     aaaatgattt tccaattcca acagatggaa tcattggaag agatttttta actaaatatc      2760
     attgcaaaat tgactatgaa ccatggttgt tatcctttac gatagaccaa gtacagattt      2820
     caataccaat agaagataat tttcagaaaa tgttgtttct accatctcgt catgaagtta      2880
     ctcgatatat accaggaatg cagttacaag aagatatggt tgtatattca caagaaattc      2940
     aacctggaat attttgtggc aatacaataa tatcagccaa agaacccata ttcaaattta      3000
     ttaatactac aaatgacgta gcttatatcg catatgcaac tttcaaacca aaaatgcaac      3060
     cgcttaaaaa ttttcatgtc tgtaaaccca agaaggctaa caaaactcaa tcagaacgac      3120
     gagcaaaaat cttgtcagaa gtcaatatgc atgaaattcc cacttacgcg agaaatgatt      3180
     ttgaaaaatt aataactgaa tatgaagaca ctttttgtct gcccgatgaa attttaacat      3240
     tcaacaattt ttacaaacag aacattaact taaacgacaa tgttcctgtg tacattccaa      3300
     attataaaac aatttattcg caaggagaag aaatggaaag gcaagttcaa aagatgctac      3360
     aagaggacat tattgaacct tctgtgtcat cttataactc gccaatacta ctagtaccga      3420
     agaaatcaga aaacaacgat aaaaaatggc gtttggtagt agactttcgt caactaaaca      3480
     aaagagttct accagataaa ttccctttac caagaattga tagcatttta gatcagcttg      3540
     gtagagctag atatttcagc actttggatt tgatgtctgg tttccatcaa atccccttag      3600
     aagaaaattc aagaaagttt acagcatttt cgacaaattc tggtcattat caatttaaac      3660
     gactaccatt tggattaaac attagcccga atagttttca aagaatgatg accatcgcta      3720
     tggctgggtt aaccccagag cgtgcatttg tctatataga tgatattgtg gtaattggat      3780
     gttctttgaa tcaccatttg caaaatttaa gatcagtttt cgaacgattg agaaaatacg      3840
     aattaaaatt aaacatttcg aaatgtaaat ttttcagaac ggaggttaca tatttgggcc      3900
     ataagttaac ggataaagga ataatacctg atgaatcaaa atatgaaaca atcaagaatt      3960
     accctattcc taaaaatgcc gacgatgtgc gaagattcgt tgctttctgc aactactatc      4020
     gcaaattcgt cgaaaatttt tcacaaatcg catatccttt gaatcaactt cttaaaaaga      4080
     atactaaatt taattggact tcggaatgcc aacatgcatt taatctttta cgtcataatt      4140
     taatgtctcc taggatatta cagtatcccg atttctctaa agaatttaca ttaacgacag      4200
     acgcatccga tataggttgc ggagctgtct tgtcacaggc tacagaagca ggagaccaac      4260
     caatagcttt cgctagtaaa acctttacac aagcagagaa aaataaaccg accatactta      4320
     aagaattgtt agccatacat tgggcgataa attattttaa accgtacctg tatggtaaac      4380
     gattcaccgt cagaaccgat catagaccac ttgtctacct ttttgggatg aaaaatccta      4440
     cctcaaagct gacaagaatc agaattgaat tagaagaatt tgattttgat gttgtatata      4500
     ttaagggtaa ggaaaatgta gcagctgacg cattatcacg tatagttact acatcagata      4560
     tgttaaaagc agtagatgta ctagttgtaa atactagatc tatgacaaag aaaaatatca      4620
     ttagcaataa taagaaaaat ataaatgaaa acacagagat tgatcacctc tcgtgctatg      4680
     aaattgaaaa tccctatgaa gcaagaaaat taatgaaact gtcgacagaa atagaaaaca      4740
     acgcaatcaa atttaaaata ttgaagaaag ataacaaaac acttcacgca caagtgcacg      4800
     aagatgtcag aaatggaagt cacgcattag tgcatgctct tccaaaaatt gaaaaaatta      4860
     caaagggatt caaaacgagg aaaatagcaa tgtctgcaga tgactacata tttaaaatgg      4920
     taccaatcaa tttattcaaa ctaatggcaa ataaaacatt aaaggattta caaataatta      4980
     tttttaaaga accaatcttc gtaaataaca tagatgatat taggaatatt ctaactaatc      5040
     atcataatac ccctattgga ggtcacgtag gacagcatcg tctgtacctc agactccgtg      5100
     gaaaatacaa atggcataat atgaaaaatt ctattgttca attcgtcaag gcctgcgaat      5160
     tgtgcaaaag aaataaaata ttgaagcaca ctatacaacc aatggtgata acaacaacac      5220
     cgtccaaagc attcgaagta atttccatcg atacggtagg tccactacct agaacaccaa      5280
     ataacaatcg ttactgtatt actatacagt gcgacttaac aaaatatatc gaaattattc      5340
     caattcaaaa taaggaggca aatacaatag caagaggtat agttcaagaa ttcatattaa      5400
     catatggaca ctttactgaa atgcgttctg atcaaggtac cgagtataat aacgaagtaa      5460
     tagaacagat cagcaaaatt cttgaaatca agcaaacatt ctcaacccca tatcaccctc      5520
     aatcaattgg atcattagaa aggaatcaca ggtgtttgaa cgaatacctg cgatcgttta      5580
     ctaatgaaca tcaaactgat tgggatgact ggattaaatt ttacgaattc gcgtacaata      5640
     caacacccca caccgaacat ggtttcacac cgtttgagtt aattttcgga aaaaaggcaa      5700
     accttccaca ggatattata caaaccagta atgaaccaat atacaatttt gatttatata      5760
     agaacgaatt aacatataaa ttacgtaaat cacaagcaat agcaaaggag aaattaatta      5820
     tacaaaaaca ccaaagaaaa aaacaatttg acaacaatat taatccacta ccgatttcaa      5880
     tcaatgatac agtatatctg aaaaacgaaa atagaagaaa attagattcg ttttatattg      5940
     gaccttatca agtaatatca attagcgagc caaactgtga aataaaacat gtcaattctg      6000
     gaaaatcttt aacagtacac aaaaacagac taataagagc ataattaaga agagcttaat      6060
     tttaagtaag agttccaccg agcctaacct ctaacaaaaa atagtaaaaa taaaaaaata      6120
     agtaaataga tgaggtaggt gaatgttccg agcttcaaag ctacggagtg aaaaattcgg      6180
     ttagaactat agtagaatta agtaccaaca ttgtaaaaaa aaaaaatata tatatatata      6240
     tataatcatt tgtaagagtc aactggagag acatttcttt tagaataatt tcattacatt      6300
     acattattct cccaaagggg gatgg                                            6325
//
ID   Gypsy-623_AA-LTR repbase;    DNA;    INV; 588 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-623_AA_;
KW   Ty3_gypsy_Ele125; Gypsy-623_AA-I; Gypsy-623_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-588
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 588 BP; 188 A; 139 C; 109 G; 152 T; 0 other;
     tgtagcatac cctaatacac aaatgtcata tatgcaaagt caaactgtaa taaaatttac        60
     tcaccaataa caaagcaacg accgtgcgca aaaacgcata gttatgcaat tgtaaacaac       120
     acatctggaa gtcattaacc accaaggcgc accgttctat cgactctctc tctacctcta       180
     cttgtgtggc gcgagggccg atagcccgca gcgcggagga ttcaaattac aaagccatgg       240
     gcacttgaag caaataaccc aaaagaatcg ataatgcaag gataggcaat tttggctatt       300
     tgtcactcca gtcgtctcct ttacatatct ataccactct ttcagacaca tgcattgtat       360
     tgtatttgac agggtataaa aaccctagaa ctttcagaca ataaaggatt cttttgattt       420
     agctcgaccc aattggatgt tatccaatct tggctatcga ccactacgtt gaagactcca       480
     atgcgaccca cttggtgaat accaggatgg ctatcgcacc gtaattaaag taagtccgtc       540
     gcgtttgcac cgtagtcgtg ttcgttaagt gaaaactgga aaaaacca                    588
//
ID   Gypsy-624_AA-I repbase;    DNA;    INV; 4559 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-624_AA_;
KW   Gypsy-624_AA-LTR; Ty3_gypsy_Ele75; Gypsy-624_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4559
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3503-3967] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..1298
FT                 /product="Gypsy-624_AA-I_2p"
FT                 /translation="MSEGNAGQIPSQNANQQPPANMQQQFRPPPVVNVPPA
FT                 AVNFPPPGQVDPYLLWFQQQQQNYVAELFRQQQEVIRQQQEVMQQQQQAFM
FT                 SQQEQLIRNILTSIQVQVPSNPEAILDSLASNIKEFRYDPENNVTFAVWYS
FT                 RYEDLFEKDASRLDGEAKVRLLMRKLGMSEHERYVSFILPKAPKEFDFSTT
FT                 VKKLSALFGAAESVISRRYRCLQISKQPQEDYVSYACRINKSCVEFELSKL
FT                 SEEQFKCLVFVCGLKSDKDAEVRLRLLSKIEERNDVTLEQLSEECQRLLNL
FT                 RHDTAMIEEHSTAVNALRTNQQRFKSGSPSKFHQSGGEKSSFGSSSVKTSP
FT                 ETACWLCGGMHYARECPYKSNKCNDCGKVGHKAGYCRGSEGRAPATEAECR
FT                 GSESSDRQLL"
FT   CDS           1745..4546
FT                 /product="Gypsy-624_AA-I_1p"
FT                 /translation="MAPVFRPKRPVAYAMYQAVDNELDRLQREKIITPVDF
FT                 SEWAAPIVVVRKANGKIRICGDYSTGLNEALQPHQYPLPLPQDIFANLANC
FT                 TVFSQIDLTDAFLQVEVDEGCRDLLTINTHRGLYRYNRLPPGVKAAPGAFQ
FT                 QLIDTMLVGLKGVSGYLDDIVVGGVDEEDHNRNLRAVLQRIQEFGFTIRAE
FT                 KCSFGKNQIRYLGHLCDRHGIRPDPAKIEAIQKLPAPTDVSGVRSFLGAIN
FT                 YYGKFVPNMRTLRFPLDELLKAKGEFRWTAECQRSFDRFKEILGSDLLLTH
FT                 YDPRREIIVSADASSIGVGATISHRFPDGSVKVVQHAARALTKAEMGYSQP
FT                 DREGLAIVFAVTKFHKMIFGRKFRLQTDHAPLVRIFGSRKGVPVYTANRLQ
FT                 RWALTLLLYDFSIEYVQTEKFGNADVLSRLIDNHAKPEEDYVIASVILEED
FT                 LRFVADEAVSCLPLSFKLVEQETQTDDQLRKVYRYLREGWPEEAKIDDPEI
FT                 RRFHGRRDSLCTVGKCIMFGERLVIPEKHRQRCLRQLHRGHPGILRMKALA
FT                 RSYVYWPSIDDEIVQYVKACKHCASVAKSPPKAAPVPWPRPTGPWKRVHVD
FT                 FAGPIDGVYYLLAVDAHSKWPEVVATQRITSTATISILRSIFARLGMPETL
FT                 VSDNGTQFTSSEFQKFCSDSGIDHVTTAPFHPQSNGQAERFVDTFKRALKK
FT                 IQEGKIGVGEALDVFLLTYRTTPNRQVEEGKSPSEAMFGRRIRTSLDLLRP
FT                 PPVRPPSEDKEENRRSFSAHDTVYAKVYSNNKWRWAPGTVCEKIGKVMYTV
FT                 WVEDQRMVRAHVNQMRSRAGTPASNSKPQSSALPLDVLLDAWSIPRATPAV
FT                 STSSLLPLNSTEAPSGGSSPLQPVPSTSSSLSTSLSSSTSSVSASPEFASA
FT                 DSEPATPVQLPRRSSRARRPPQWFDPYHLY"
XX
SQ   Sequence 4559 BP; 1096 A; 1135 C; 1339 G; 989 T; 0 other;
     aaagtggcga cttcgggagt ggcaaatatt gcgaaaatta gtgcaattaa ttagccacgg        60
     tgacacccac cgcgaaacgg cgaaggatga gtgagggtaa tgctggtcaa attccatcgc       120
     aaaatgcgaa ccagcagccc ccggcgaata tgcagcagca gtttcggccg ccgccggtag       180
     tgaatgtgcc tcccgcagca gtgaattttc ctccccccgg acaagttgac ccatatttac       240
     tgtggttcca gcagcagcag caaaattatg tggcggaact ttttcggcag cagcaggagg       300
     tgattcgaca gcagcaagag gtgatgcagc agcagcagca agcattcatg tcccagcagg       360
     agcagctgat tcggaacatt ttgacgtcga tccaggtgca ggttccgtca aatccggaag       420
     cgatattgga ctccctagcc agcaacataa aggagttccg atatgacccg gaaaacaatg       480
     ttacgtttgc tgtgtggtac agtcggtacg aagacctttt cgagaaggat gccagccggc       540
     tcgacggtga agcgaaagtg cgtttgctga tgcggaagct gggaatgtcg gaacacgaaa       600
     ggtacgtcag tttcattcta ccgaaagcgc cgaaggaatt cgacttttcg acgacggtga       660
     agaaattgag tgccttgttc ggagctgccg agtccgtcat tagtcggaga tatcgatgcc       720
     tgcagatttc gaagcagcca caggaggact acgtctcgta tgcatgccgc ataaacaaat       780
     cctgtgtgga gttcgagctg tccaaacttt ccgaggagca gttcaaatgt ctcgtgtttg       840
     tgtgtggact gaagtcggac aaggatgcgg aggtacgatt gcggctgctg tcgaagattg       900
     aggagaggaa cgacgtgacg ttggaacaac tgtccgaaga gtgtcaacgt ttgttgaatt       960
     tgcgacacga tacggcgatg attgaggagc actcgaccgc cgtgaatgcc ctgagaacca      1020
     accagcagcg gttcaagagt gggtcaccgt cgaaattcca ccagtccggt ggagaaaaga      1080
     gcagtttcgg atcgagcagc gtcaagacga gtccggaaac agcttgctgg ctatgcggag      1140
     gaatgcacta tgccagagag tgcccctaca agagcaacaa gtgcaacgat tgtggcaagg      1200
     ttggccataa agcgggttac tgcaggggca gcgaaggtcg agccccggcg acggaagccg      1260
     aatgccgtgg cagcgaaagt agtgaccgtc aactcctgta gcgtgcaaca gcgtcggaag      1320
     tacgtgccgg ttggaatcaa cggatcacca gtgcgccttc aaatcgatac cggttccgac      1380
     atcaccatca tttcttcgga atcgtggagg aagattggca gcccttcaac gtctgtgtca      1440
     acggtcgtcg ccaagtcagc tagtggtagg cccctgcaga ttgaaggtga gtttgcatgc      1500
     gatctttcta tcgatggaca agtttgcgtg gcgtagtccg agtgacgaga gagaagttgc      1560
     atcttctggg ttccgacatg atcgatgctt tcggattgtg gtcggtccca ttcgactcga      1620
     tttgcaacag tgtcagcagt actccagcct ccgtgagcaa gcttcaggca gaatttccga      1680
     gagtgttcgc aggtagtccg gactttgcaa gaaagcgaag gtgcagttcc agctgaagac      1740
     cgggatggcc cctgtgtttc ggccgaagcg tccggttgcg tacgcgatgt accaggcagt      1800
     cgacaacgaa ctggaccgtt tgcagcgtga gaagatcatc acaccggtag acttttcgga      1860
     gtgggcagct ccgattgtgg tggtccgcaa ggcgaatggc aagatacgaa tctgcgggga      1920
     ctattcgacg ggactgaatg aagcgctgca accccatcag tatccgttac ctctgccgca      1980
     ggacattttt gccaatcttg cgaactgcac cgtcttcagc cagatcgatt tgacggatgc      2040
     gtttctgcaa gtggaggtgg acgaaggctg tcgtgacctc ctgactatca acacgcaccg      2100
     aggcttgtat cgctacaatc gtcttccacc gggtgtgaag gcagcacccg gagcgtttca      2160
     acagctgatc gacacgatgt tggttgggtt gaaaggagtg agcggctacc tggacgacat      2220
     agttgtcggc ggcgtcgacg aagaagacca caatcggaat cttcgagcgg tgctgcaaag      2280
     aatccaggag ttcgggttca ccatccgagc ggaaaagtgt tctttcggca agaatcaaat      2340
     ccgctacttg ggacatctgt gtgatcgaca cggaatacgg ccggatccgg cgaaaatcga      2400
     ggctatccag aagctgcctg cgccgacgga cgtcagtggt gtccgttctt ttctgggtgc      2460
     cataaactat tacggcaagt tcgtgcctaa tatgcgcacg ttgcgattcc cgctcgacga      2520
     gctgctgaaa gctaaggggg agttccgttg gacagctgag tgtcaacgtt cgttcgaccg      2580
     gttcaaggaa attcttggtt ccgatcttct gttgactcat tacgatccgc gacgagagat      2640
     catcgtttcg gcggatgctt catcgatcgg tgtcggcgcg actatcagcc ataggttccc      2700
     cgacggttcg gtgaaggttg ttcagcacgc agcgcgagcg cttacgaagg cagagatggg      2760
     ctacagtcag ccggatcgcg aaggtttggc gattgtgttc gctgtaacga aattccacaa      2820
     gatgattttc ggcaggaagt ttcgtttgca gaccgaccat gcacctttgg tccggatttt      2880
     cggatcgcgg aaaggcgttc cggtgtacac agcgaaccgt ttacagcgct gggcgctgac      2940
     gttgctgttg tacgattttt ccatcgagta cgtgcaaacg gagaaatttg ggaacgccga      3000
     cgtcctttcg aggctgatcg acaaccatgc caagcctgag gaggattacg tgattgcgag      3060
     cgtgattctg gaggaggatt tgcggttcgt agcggacgaa gcagtgagct gtcttccgct      3120
     cagtttcaaa ttagtggaac aggagacgca aaccgatgat cagctacgca aagtgtaccg      3180
     gtaccttcga gaaggctggc cggaagaagc aaaaatcgac gatccggaga ttcgacggtt      3240
     ccatgggcgg agagattcgt tgtgtactgt tgggaagtgc atcatgttcg gagagcgatt      3300
     ggtgattccc gagaagcatc gacagcggtg cctgcgacag ttacaccgag gacaccccgg      3360
     aattctgcgg atgaaggcgt tggctaggag ctacgtatat tggccgtcga ttgacgatga      3420
     gatcgtccag tacgtgaagg catgcaagca ctgcgcttcc gtagcaaaat ctccaccgaa      3480
     agcagcaccg gttccgtggc caagaccaac aggtccatgg aagcgtgttc acgtggattt      3540
     tgctggtccc atcgacggag tgtactacct gctagcagtc gacgcgcatt cgaagtggcc      3600
     tgaagtggta gcaacgcagc gaatcacgtc cacagctacc atcagcattc tacgaagcat      3660
     ctttgcccgg ctgggaatgc ctgaaacgct cgtcagtgac aacggtacgc aattcactag      3720
     cagcgagttc cagaagttct gcagcgatag cggcatcgat cacgtcacca cggcaccttt      3780
     ccacccacag tcaaacgggc aggctgaaag gttcgtggac accttcaaga gggcgctgaa      3840
     gaaaattcag gaggggaaga tcggagttgg cgaagcgttg gatgtcttct tgctgaccta      3900
     ccgcacaaca ccgaatcgac aggtcgaaga aggtaaatca ccgtccgaag caatgttcgg      3960
     ccggcgcatc agaacgagtt tggacctact tcgccctcca ccggtgcgtc caccgagcga      4020
     agacaaggaa gaaaaccgaa ggagcttctc tgcacacgat acggtctatg cgaaggtgta      4080
     cagcaacaac aagtggcgct gggcacctgg aaccgtttgt gagaagatcg gcaaggtgat      4140
     gtataccgtt tgggttgaag atcaacggat ggttcgtgcg cacgtcaacc agatgcgcag      4200
     tcgggccggc actccggcaa gcaacagtaa gccgcagtcg tcagcgctgc ctctcgacgt      4260
     tctgctggat gcgtggagca ttccaagagc tacgccggca gtctcaacat catctctgtt      4320
     gccgttgaat tcaaccgagg ctccatctgg tgggtcctcg ccgttgcaac ctgtgccgtc      4380
     tacgtcctca tcgttgtcta cgtccttgtc ctcgtcaacg tcatctgtat cagcatctcc      4440
     agagttcgca tcagcagata gcgaaccagc tacaccagta caacttccac gtcggtcttc      4500
     ccgagctcga aggccgcctc agtggtttga tccgtaccat ctctattgag aagggggga       4559
//
ID   Gypsy-624_AA-LTR repbase;    DNA;    INV; 283 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-624_AA_;
KW   Ty3_gypsy_Ele75; Gypsy-624_AA-I; Gypsy-624_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-283
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 283 BP; 63 A; 62 C; 69 G; 89 T; 0 other;
     tgttggggac aactgaaatg cggatagccc ctacctaccg ccgccgctgg actcgcgggt        60
     gactgtgtta tctgttaccc tttgatgtcg acacagcgca tacatgtatg aaagtgaatg       120
     ttatgtatgt tgtccaaatg taaataaagt tagtttgtta ttgtttgttt taccgctaac       180
     aacgcgtttt aattcgtcgt ccgaattagt agttttaatt tgttttctcg cgctcaagtc       240
     cgcgatatgc gagttcggcc accacgtacg ggcgcgggat cca                         283
//
ID   Gypsy-625_AA-I repbase;    DNA;    INV; 4695 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-625_AA_;
KW   Gypsy-625_AA-LTR; Ty3_gypsy_Ele63; Gypsy-625_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4695
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
CC   Positions [3727-4047] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..3916
FT                 /product="Gypsy-625_AA-I_2p"
FT                 /translation="MADGDSDRNGQNGVDPPGVINRQQLNQPIIPAPAAHQ
FT                 QQQQQQQIFVPVVTTHQQQQPFVPVSSAPQQQFSTFQSHQTPQAQVSTDML
FT                 MQIMHMMQQSMTQSQQRHQQLMGQIIAQQQQFLSSVASSINVQVPPNPEQI
FT                 LDSLASNIKEFRYEAESNATFAAWYSRYDDLFEKDAARLDDEAKVRLLMRK
FT                 LGLSEHERYVSYILPKFPKEFSFAQTVAKLKSLFGAKESVISRRYRCLQIA
FT                 KNPTEDHVAFACRVNKACVEFELGKLTEEQFKCLVYVCGLKSENDVEIRTR
FT                 LLTKIEDNNDVTLEQLSEECQRLFNLKHDSAMIEAPSPYNQVQAVRKFGGK
FT                 RFDKRDREAQTHFSSDAVKKPTYPCWLCGALHYARDCSYKNHKCSDCGQFG
FT                 HREGYCESAKSRKPGSKRKKRVVSTKVVVVDVCSVQQRRRFVSVGLSGTNI
FT                 RLQLDTASDITVISRESWQKLGSPALSPATVKAKTASGNILSLDGEFECDV
FT                 TIGESTRRELIRVTGKQLQLLGSDLVDSFNLWSVPMDSFCCHVSGSPASPA
FT                 ALKSSFPNVFSEQLGLCSKTKVKLELKESVRPVFCPKRPVAYAMYDAVDQE
FT                 LDRLEKLNIITPVEYSEWAAPIVVVRKANGSIRICGDYSTGLNAALQPNQY
FT                 PLPLPDDIFAKLANCKVFSQIDLSDAFLQVEVDEQRRKLLTINTHRGLYSY
FT                 NRLPPGVKVAPGAFQQITDTMLAGLECTSGYLDDVIVGGRTEEEHDRNLRA
FT                 VLKRIQDFGFTIRPEKCTFRKQQVQYVGHVVDSRGLRPDPAKIEAITKLPP
FT                 PTDVSGLRSFLGAINYYGKFVPNMRKLRYPLDNLLKDDAKFQWTPECQKAF
FT                 EQFKAILSSDLLLTHYDPKREIIVSADASSVGLGATISHKFPDGSIKVVQH
FT                 ASRALTKAEQGYSQPDREGLAIIFAVTKFHKMLFGRHFRLQTDHQPLLRIF
FT                 GSKKGIPVYTANRLQRFALHLLLYDFDIEYVPTHKFGNADLLSRLINQHVR
FT                 PEEDYVIASLNLEEDLRSVVSNTVKVLPLNFRAVAQSTQADPLLRQVYHHV
FT                 QHGWPQSKLSGSDIQRFQVRQESLSVVDGCVMFAERLVIPSLLRKRCLEQL
FT                 HRGHPGMQRMKALARSYVYWPSLDADIVDFVKACRHCASVARSPPHSPPVP
FT                 WPKPAAPWQRVHVDYAGPIEGDYYLIVVDSFSKWPEIVQTNRITSAVTIPF
FT                 SVVCLLGWVCPLHWSATTVPSSQAPNLPISAPPTASNTSRRPHSIHNRMAK
FT                 RNDSWTLSRGP"
FT   CDS           3523..4683
FT                 /product="Gypsy-625_AA-I_1p"
FT                 /translation="MSTLCVRSQIASSLSTGAVAQTSRSMAARPRRLRRSN
FT                 RRRLLPHRRRFLLQVAGDRPNESYHLGGDHSILRGLFARLGMPVTLVSDNG
FT                 TQFTSAEFADFCASNGIEHLTTAPFHPQSNGQAERFVDTFKRAVKKIREGR
FT                 GSIQHALDIFLLTYRSTPNRALPDQKSPSEIMFGRKIRTCLELLRPPPIRT
FT                 PVPTSDDLKKSRSFSRNDPVYAKLHGRNGWKWVPGTVVEKIGDVMYNVWID
FT                 DRRMLRSHINQLRSRHAADTTPKPSIGQATSNQHLLPLDILLGAWNLPSQP
FT                 AGTPTPSLVPSASLSSPTLAPVSSPEPTLLGSTPARASSTPRHEVPAVPST
FT                 SSSSTTSTSPEFESAIEVEPVVDLPRRSSRTRRPPIRFDPYHLY"
XX
SQ   Sequence 4695 BP; 1128 A; 1382 C; 1184 G; 999 T; 2 other;
     aaagtggcga cgagaattcg cgagtgaggg tagtttttcc gtcgataaaa actcacccaa        60
     catttcgtca cccgcgcgga agaaaagaaa gtggagtgcg atggctgacg gtgatagtga       120
     tcgaaacggg caaaatggtg ttgacccccc gggagtgata aatcggcagc aattaaacca       180
     gccgattatc cccgcgccgg cggctcacca gcagcagcag cagcagcagc aaattttcgt       240
     ccccgttgtg actacacacc agcagcagca gccattcgtt ccggtttctt cagctccaca       300
     acagcagttc tcaaccttcc aatcccacca aacaccgcaa gcccaagtaa gtaccgatat       360
     gctcatgcaa attatgcata tgatgcagca atcgatgacc cagagtcagc agcggcacca       420
     acagcttatg gggcaaatta ttgcgcagca gcagcagttc ctaagtagcg tcgcgtcgtc       480
     aataaatgtt caagtgccac ccaatccgga acaaatcctt gactccttgg ccagtaatat       540
     caaggaattc cggtacgagg ccgaaagcaa tgccactttc gcggcgtggt actctcgcta       600
     cgacgacctc ttcgaaaagg atgctgcsag gctggacgat gaggcgaaag ttcgcctact       660
     tatgcgcaaa ttgggtttat ctgagcatga gaggtatgtg agctatatct tgcctaaatt       720
     tccgaaggag tttagcttcg cacagacagt tgccaaactc aaaagcctgt ttggagcgaa       780
     agagtcggtg attagccgcc gataccgatg cctgcagatc gcgaaaaatc ccacggagga       840
     tcatgtggcg ttcgcatgca gggtaaataa ggcttgcgta gaatttgaac taggaaagct       900
     cacagaagag cagttcaagt gcttggtgta cgtttgtggc ctgaaatcgg agaatgacgt       960
     cgagatccgc actcgtctcc tcacgaaaat cgaggacaac aacgacgtca cgttggagca      1020
     gctctccgag gagtgtcaac gcctgttcaa tctcaagcat gacagtgcga tgatcgaagc      1080
     tccatctccg tacaaccaag tgcaagcggt gaggaagttt ggtgggaaga ggttcgacaa      1140
     gcgtgatcgc gaggcacaaa cacatttttc cagtgacgcc gtcaagaagc caacctaccc      1200
     gtgttggctc tgcggtgcat tacactacgc ccgtgattgc agctacaaga accacaaatg      1260
     ctccgattgc ggccaattcg gacaccgtga aggttactgc gaaagtgcca aatcccggaa      1320
     acckggaagc aaacgcaaga agcgagtagt ctcgacgaag gtggtggttg tcgacgtgtg      1380
     cagcgtgcag cagcgacgca gattcgtttc cgtcggcctt tctggaacga atatcagact      1440
     gcaactcgac accgcctcag atatcaccgt catcagcagg gaaagttggc agaaactcgg      1500
     cagccctgca ttatcgcctg caacggtgaa agcgaagaca gcatccggca acatcttgtc      1560
     gctcgatggg gaattcgagt gcgacgtcac catcggagaa agcacacggc gagagctcat      1620
     ccgtgtcacc gggaaacaac ttcagctact cggttccgac ttggtggaca gcttcaatct      1680
     ctggtccgtg cccatggaca gtttctgttg ccacgtgtca ggctctcctg cgtcacccgc      1740
     tgcactcaag tcgtctttcc ccaacgtttt cagcgagcag ctcggcttgt gcagcaaaac      1800
     gaaagttaaa ttggagttga aagaaagtgt tcgacccgtt ttctgtccga agcgtccggt      1860
     tgcgtacgcg atgtacgatg ccgtcgacca ggaactcgac cggctggaaa agctaaatat      1920
     catcaccccg gtcgaatatt cggagtgggc cgctccgatc gtcgtcgtcc gcaaagccaa      1980
     tggttccatt cgaatttgcg gagactattc cacgggtttg aacgctgcgc tccaaccaaa      2040
     ccagtatcca cttcccctgc ccgacgacat cttcgccaag ctggctaact gcaaggtctt      2100
     cagccagatc gatttgtccg acgccttctt gcaggtggaa gtcgacgagc agcgccgtaa      2160
     gttgctaacc atcaacactc atcgtggtct ttactcctac aaccgcctcc cgccgggtgt      2220
     gaaagttgcg cctggtgcgt ttcagcagat caccgataca atgttagccg gtctggaatg      2280
     cacttccggc tatctcgatg atgttatcgt tggcggccga actgaagagg agcacgaccg      2340
     caatttacgg gctgttttga agcgaatcca ggatttcggc ttcaccatcc gacccgaaaa      2400
     gtgcacgttt cgcaagcagc aggtgcaata cgtgggtcac gtcgtcgata gtcgcgggtt      2460
     acgtccggat ccggccaaaa tcgaggcgat tacgaagctg ccgccgccta cagatgtgtc      2520
     cggactacga tccttcctgg gggccatcaa ctactacggc aagtttgttc ccaacatgcg      2580
     taagctccga tacccgctcg acaatctcct gaaagacgac gcaaaattcc agtggactcc      2640
     agagtgccag aaagcgttcg agcagttcaa ggcaattctc tcctcggatc tgctactcac      2700
     acattacgat ccgaagcggg agatcatcgt ttctgccgac gcttcttccg ttgggcttgg      2760
     ggcaacaatc agccacaagt tccccgacgg tagcatcaag gtcgtccagc acgcttccag      2820
     ggcactcacg aaggccgagc aaggctacag ccaaccggac cgtgaaggtt tggccatcat      2880
     atttgccgtc acgaaattcc acaaaatgct cttcggacgg cactttcggt tgcaaaccga      2940
     ccaccagcct ctgctccgta tcttcggctc gaaaaaagga ataccggtct acactgccaa      3000
     ccggctccaa cgtttcgctc tccatctgct gctctacgat ttcgacatcg agtacgtgcc      3060
     cacccacaag tttggcaacg cagacctgct ttcccggttg atcaaccagc acgtcaggcc      3120
     cgaagaggac tacgtcatcg cgagcctcaa cctggaagag gatctcaggt cagttgtttc      3180
     taatacggta aaggttttac ctctcaattt cagagccgtc gcgcaaagca cccaagcaga      3240
     cccactgctc cgccaagtct accaccacgt tcaacatggc tggccccagt caaagctttc      3300
     ggggtccgac attcaacggt tccaagtcag gcaggaatcg ctctccgtgg tagatgggtg      3360
     cgtcatgttt gccgaacggc tcgtcatccc gtcgctgctc cgcaagcggt gcctcgaaca      3420
     gcttcatcgt ggccatcccg gcatgcagcg tatgaaggcc ctcgccagaa gctacgtgta      3480
     ttggcccagt ttggatgccg atatcgtcga cttcgtcaag gcatgtcgac attgtgcgtc      3540
     cgtagccaga tcgcctcctc actctccacc ggtgccgtgg cccaaaccag ccgctccatg      3600
     gcagcgcgtc cacgtcgact acgccggtcc aatcgaaggc gactattacc tcatcgtcgt      3660
     cgattccttc tccaagtggc cggagatcgt ccaaacgaat cgtatcacct cggcggtgac      3720
     cattccattc tccgtggttt gtttgctcgg ctgggtatgc ccgttacact ggtcagcgac      3780
     aacggtaccc agttcacaag cgccgaattt gccgatttct gcgcctccaa cggcatcgaa      3840
     cacctcacga cggccccatt ccatccacaa tcgaatggcc aagcggaacg attcgtggac      3900
     actttcaaga gggccgtgaa gaagattcga gaggggagag gatcgataca gcacgcactg      3960
     gacattttcc tgctcacgta ccgcagcaca cccaaccggg ctctgccaga ccagaagtcg      4020
     ccatcagaga tcatgttcgg gcgcaaaatc cgcacgtgtc tcgagcttct gcgtcctccg      4080
     ccgatacgta caccagtgcc aacgtccgac gacctcaaga aatcgagatc cttcagccga      4140
     aacgaccctg tttacgccaa gctccacggt cgtaacggtt ggaaatgggt tcccggtaca      4200
     gtcgtcgaaa agatcggaga cgtgatgtat aatgtgtgga tcgacgatcg ccgaatgttg      4260
     cgctctcaca tcaaccagct ccggagtcgt catgctgctg acacgacacc gaagccttcc      4320
     atcggtcaag ccacctctaa ccagcatttg ttgccgctgg acatcctgtt gggtgcctgg      4380
     aatcttccca gccaaccggc cggcacgcca actccttcgc ttgttccgag cgcctcgtta      4440
     tcgtcaccta cgttagcgcc tgtctccagt cccgagccta ccttgctagg ttccacgccg      4500
     gcccgtgcat cgtctacgcc acgacacgag gttccggctg tcccgtccac ctcttcatca      4560
     tcaacgacat caacatcacc cgaattcgaa tccgcaatcg aagttgaacc ggtggtagat      4620
     cttcctaggc gatcttcacg gactcgaaga ccgccaatca ggttcgaccc ctaccaccta      4680
     tattaagagg ggaga                                                       4695
//
ID   Gypsy-625_AA-LTR repbase;    DNA;    INV; 294 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.10, Created)
DT   01-NOV-2010 (Rel. 15.10, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-625_AA_;
KW   Ty3_gypsy_Ele63; Gypsy-625_AA-I; Gypsy-625_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-294
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (30-OCT-2010).
XX
RN   [2]
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 294 BP; 68 A; 56 C; 73 G; 97 T; 0 other;
     tgttgaggac aaccctatcg cggtgtacta tgaagtacta cgcacgccgc tgggctcgca        60
     ctcggcagca taactgctaa tgtgtgatgc tggagaagcg catcaatgaa tgattttaat       120
     gtggttgtca tcgtattgta tctgtgtact tcagttagtt tgtttacgtc ccgtatatcg       180
     ttttgtactt ttagcgtgtc gcaataaatt atgttttatt agttacgtgc gcgtttaatt       240
     ccctgatgta gggacgagta tagagaacga ccatcggggt atttccacgg taca             294
//
ID   Gypsy-626_AAe-I repbase;    DNA;    INV; 4119 BP.
XX
AC   .
XX
DT   14-DEC-2018 (Rel. 26.04, Created)
DT   14-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-626_;
KW   Gypsy-626_AAe-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4119
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4119
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2157-2157 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..4101
FT                 /product="Gypsy-626_AAe-I_1p"
FT                 /translation="MFSRSQESSDIYESENFGRQLPFSNLHNSAEANNSGS
FT                 QGSLVGVLDNNRISLQTNVNESSGECIQAENARMAQKPTEEKSIRMFNLNE
FT                 IFGLLPDFSGNSYENFEHFAKLAQQIKHIFKINDDIMKLIVLKHLKGNAQI
FT                 WSMSQTDLMKMDLQEWFKKMEDIFSVKTSSIELHKQLESRKWRFGESFGEY
FT                 CSEKQILALPLQLHESSLIEYLIEGIPDLQLRNQARIRNFSRVADIKNAFA
FT                 FIKIHQRTNSSSSIICYNCRQPGHIAARCRQICRKNPWKEQVHHSPKRIGA
FT                 VDTIPDKSTELDEQYNGLVNLQISNTDQPLKALLDTGSPVSLIHLKHTKHE
FT                 KIDDHDKTKIYKGIGGTRLTILGKFNTNVYIQNILFKVSFLVVPDSTMSSY
FT                 DAIIGRDLIMKPGVRTIIERNHISISRTPIIEKLNAEQLDEMKPINAVDES
FT                 KILANVGNVSNDQFVKFLDILKRHYLFSEKPKQAETKYDMKINLKTGTQFH
FT                 FKPRRLSHAEKSKVDKKIKELLHENVIKESDSPFASPIVLIPKKDGDIRMC
FT                 VDYRKLNKDTHRDNYPLPLIEDILDKLRNKRIFSVLDLKSGFHQIKIAPEC
FT                 TKFTSFVTPSGQYEYLRVPFGLCNAPAVFQRFINIIFKKLIEEGKLCVYID
FT                 DIIIFSDTFEEHLEILQSVFEILSKNLLELNLEKCRFLFEEIDYLGYTINK
FT                 FGRRPNKSHIEAVSNFPVPKNVKDIQRFLGLTSYFRKFIKNFATVARPLYN
FT                 LLKKDTVFNFGDEQLDAFQTLKERLXSAPILSIFNPNAETQLHCDASSYGF
FT                 GAILMQKQEDNNFHPVSYFSKNTDNFESKLHSFELETLAVVYAIKRFHVYL
FT                 SGMNFKILTDCNALAQTLIKKEINPKISRWALFLENYDYTLEYRDEARMKH
FT                 VDALSRQNMTKNKEILQNIDINLLDTEDIERNVILAQEQDDKLKNIKQHLE
FT                 NSTFPNFELRNGVLFRKVDDKMLLVIPKLMIDNIIRICHDKNGHIGIDKTI
FT                 FEIKKHYWFSHMRKIVKKYISNCLSCIFYSPKEGKKEGFLKTINKGNEPFN
FT                 TIHLDHYGPIQLQSSGGFKYISVVVDAFTKYVKFYPTKTTNTDEVIRNLSN
FT                 YMNYYSKPARIITDRGSCFSSSKFKTFVESNCIEHVKTAAYTPEANGQAER
FT                 VNRTLTPMLSKLIIDTGLKWNHLLNRMEYIFNNTYNRSIENYPSVLLFGSL
FT                 QRNLNFVDNNLEAFVKNYNNNYRRIDLQSERNKAMEIIQKNQMYSKSATDR
FT                 KRKKVTEYKVGDFIVLKTVSPSKLSEKFKGPYVIQKVLPNDRYVVTDIEGF
FT                 QASSLPFQSVCSPGNMKLWLSPNNLVDLNSTNETADEDIG"
XX
SQ   Sequence 4119 BP; 1539 A; 576 C; 709 G; 1294 T; 1 other;
     attcagaagt gggatatcgc ctgaaaatat cgccttgcac ccaagatgtt ctctagaagc        60
     caggagtctt cggatatcta cgaatcggaa aatttcggaa gacaacttcc tttttcgaat       120
     ctacataatt cagccgaagc aaataattct ggatctcaag gatcactcgt tggtgttttg       180
     gacaacaatc gcatttcgct tcaaacaaac gtgaatgaaa gttcaggaga atgtattcaa       240
     gctgaaaatg caagaatggc tcaaaaacct acggaagaaa aatctattcg gatgttcaat       300
     ttaaatgaaa tatttggcct tttaccagac ttttcgggaa acagttatga aaattttgaa       360
     cattttgcga agttggcaca acaaatcaaa catattttca agatcaatga tgacattatg       420
     aagcttatcg ttttgaaaca tttgaaaggg aatgcgcaaa tttggtccat gtcacagacg       480
     gatttaatga aaatggatct ccaggaatgg ttcaagaaaa tggaagacat tttttcggtg       540
     aagacaagtt caattgaatt acacaaacag ttggaatcaa gaaaatggcg ttttggagaa       600
     tcctttggtg aatattgcag tgaaaaacag attttggcgt taccgttaca gctccacgaa       660
     tcgtcgttaa ttgagtacct tattgaggga attcctgatc tacagttaag aaatcaggca       720
     agaataagaa atttttcaag agttgcagat atcaaaaatg cctttgcgtt catcaaaatt       780
     catcagagga ccaactcatc atcttccatc atttgttata attgtcgtca accaggacat       840
     attgctgcga gatgtcgtca aatttgtcgg aaaaatccat ggaaggagca agtacaccat       900
     agtccaaagc ggattggagc tgttgataca atacctgaca aatcgactga gttagacgaa       960
     caatataacg gacttgtaaa tttgcaaatt agtaatactg accaaccttt aaaagcttta      1020
     ttagatacag gaagtcctgt ttctctgata catcttaaac atacaaaaca tgaaaaaatt      1080
     gatgatcacg ataaaactaa aatctataag ggtatcggag gaacacgact aaccatttta      1140
     ggaaaattta atactaatgt ttatattcaa aatattcttt ttaaggtaag ctttttggtc      1200
     gttcctgatt caaccatgtc gtcgtatgat gcaattattg gacgtgattt aataatgaaa      1260
     cctggggttc gaacaattat tgagagaaac catataagta tttccagaac tccaatcatt      1320
     gagaaactga atgctgaaca gcttgacgaa atgaaaccta ttaatgcggt cgatgaatca      1380
     aaaattttag caaatgttgg aaatgtaagt aacgatcagt ttgtaaagtt tttggatata      1440
     ttaaaaagac actatttatt ttccgagaag cctaagcagg ctgaaactaa atatgatatg      1500
     aaaattaatt tgaaaactgg tactcagttt cattttaagc ctagaagatt gtcacatgcc      1560
     gaaaaaagta aagtagataa aaaaattaaa gaacttttgc acgaaaacgt tattaaagag      1620
     agtgattctc catttgctag ccctatagtt ttaataccaa agaaagacgg tgatataaga      1680
     atgtgcgttg attatcgtaa attaaacaaa gacactcata gagataatta tcctttacca      1740
     ttaattgaag atattttgga taaattaaga aacaaacgaa tattttcggt gctggattta      1800
     aaatctggat ttcatcaaat caaaattgct cctgagtgca ctaaatttac gtcatttgtt      1860
     actccatctg gtcagtatga atatttacgc gtaccttttg gtctttgtaa tgctcctgca      1920
     gtttttcaga ggttcataaa cataattttc aaaaaattga ttgaagaagg aaaactttgt      1980
     gtttatattg atgatattat tatattttct gatacttttg aagaacattt ggaaatattg      2040
     caatcagttt tcgaaatttt aagtaaaaat cttttagagt tgaatttgga gaaatgcaga      2100
     tttttatttg aagaaattga ttacttaggc tatacgatta ataaatttgg tagacgccca      2160
     aataaatcgc atattgaggc tgtgtctaat tttcccgttc caaaaaatgt taaagatatt      2220
     caaagatttt taggattaac gagttatttt agaaaattta taaaaaactt tgctactgtt      2280
     gctagaccgt tatataattt attaaaaaag gatacagtat ttaattttgg tgatgaacaa      2340
     cttgacgctt ttcaaacatt aaaggaaaga ttaakatctg cacctatact aagtattttt      2400
     aatccaaatg ctgaaactca actgcactgt gatgcaagtt catatggatt tggagcaata      2460
     ttgatgcaaa aacaagaaga taataatttt catcccgtta gctattttag taaaaataca      2520
     gacaattttg agtcgaaatt acatagtttt gagttagaaa ctcttgcggt agtttatgca      2580
     ataaaacgtt tccatgttta tttatctggg atgaatttca aaatacttac tgattgcaat      2640
     gcattagcac aaactttgat aaagaaagaa attaatccaa aaattagtag gtgggctttg      2700
     tttcttgaaa attatgacta cactttggaa tatagagatg aagcgcggat gaaacatgtc      2760
     gatgccttaa gtagacaaaa tatgacaaaa aataaagaaa tattacaaaa tattgatatt      2820
     aatttattag atacagaaga tattgaaagg aatgttattt tggctcaaga gcaagatgat      2880
     aaattgaaaa atataaaaca gcatcttgaa aacagcactt ttccaaattt cgaattgaga      2940
     aatggtgttc ttttcagaaa ggttgatgat aaaatgttat tagtaatacc caaattaatg      3000
     attgataata ttattagaat ttgtcatgat aaaaatggac atattggtat agataaaaca      3060
     atcttcgaaa taaaaaagca ttattggttt tcacatatga ggaagattgt taagaaatat      3120
     atttcaaatt gtttaagttg tattttttat agtccaaagg aaggtaagaa agaaggattt      3180
     ttaaaaacta ttaataaagg taatgaacca tttaatacaa ttcatttaga tcattatggc      3240
     ccgatccaac tacaatctag tggagggttt aagtacattt cagttgttgt tgatgcattt      3300
     actaaatatg ttaaattcta tcctacaaaa acgacaaaca cagacgaagt tattagaaat      3360
     ctatcaaatt acatgaatta ttacagcaaa ccagctagaa ttattactga tagaggatct      3420
     tgtttttcat catcaaagtt taaaacattc gtagaaagta attgcattga acatgtaaaa      3480
     actgcagcgt acactccaga agcaaatgga caagcagaac gtgtaaatag aacacttaca      3540
     cctatgctat cgaaattaat tattgatact ggtctgaaat ggaatcatct gttaaataga      3600
     atggagtata tttttaacaa tacatataat aggtctatcg aaaattatcc aagtgtttta      3660
     ttatttggat cacttcaaag aaatttgaat tttgttgata ataacttgga agcatttgta      3720
     aagaattaca ataataatta tagaagaata gatttacaat ctgaaagaaa taaggcaatg      3780
     gagatcattc aaaaaaatca aatgtatagt aaatcggcaa ctgatagaaa acgcaaaaaa      3840
     gtaactgaat ataaggtagg tgattttatt gtccttaaaa cagtttcacc atcaaaattg      3900
     tcagaaaaat tcaaaggtcc ttatgttatc caaaaagttt taccaaatga tcgttatgta      3960
     gttacggata tagaaggttt tcaagcatct agccttccct ttcaatctgt atgttcacca      4020
     gggaatatga aactatggtt atctcctaat aatctagtag atctaaattc aacaaatgaa      4080
     acagccgatg aggacatcgg ttaatcagga tggccgaaa                             4119
//
ID   Gypsy-626_AAe-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   27-MAR-2011 (Rel. 16.04, Created)
DT   14-DEC-2018 (Rel. 23.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-626_AAe-LTR.
XX
NM   Gypsy-626_AAe-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-129
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(4), 1426-1426 (2011).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 129 BP; 54 A; 17 C; 23 G; 35 T; 0 other;
     tgttgtaata aagaataata taattaatat catcaaggta ggcagtgact tagggagaca        60
     tgactgaata tgtaaaagga ctgacattca ataaataacc accaaactga aaagaagttg       120
     tttccttca                                                               129
//
ID   Gypsy-627_AA-LTR repbase;    DNA;    INV; 268 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 26.04, Created)
DT   17-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-627_;
KW   Gypsy-627_AA-I; Gypsy-627_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-268
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-268
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2130-2130 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 268 BP; 88 A; 53 C; 49 G; 78 T; 0 other;
     tgtaaaccta agatttgaaa aaaaaatcag tactaccata catccaataa ccatgattat        60
     acaaatcaac acagaagtgg tgaacacccc tgatatccgt gtagatttcc ttagcagtgt       120
     agacttcgca aagctaaatt gttagagtag aacaataaaa tcattctttg ttatcctctc       180
     gtggaaatcg gtcgttttta tcctgtacgg atcgggccat attgagaaac gtctcgatta       240
     ttcggcgatt gtaggcatcg agcttaca                                          268
//
ID   Gypsy-627_AAe-LTR repbase;    DNA;    INV; 121 BP.
XX
AC   .
XX
DT   27-MAR-2011 (Rel. 16.04, Created)
DT   01-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-627_AAe-LTR; Gypsy-707B_AA-I.
XX
NM   Gypsy-627_AAe-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-121
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(4), 1427-1427 (2011).
XX
RN   [2]
RP   1-121
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 121 BP; 43 A; 18 C; 21 G; 39 T; 0 other;
     tgtagtaata aatgagtagg tagctatcac agtaggcatt gacttaggct agacattaaa        60
     taaattgtaa tgactgacat tcaataaact attcccaaac tgattagatg tgtttccttc       120
     a                                                                       121
//
ID   Gypsy-628_AA-I repbase;    DNA;    INV; 4511 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 26.04, Created)
DT   17-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-628_;
KW   Gypsy-628_AA-I; Gypsy-628_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4511
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4511
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (17-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4511 BP; 1376 A; 909 C; 1069 G; 1157 T; 0 other;
     tggtgtcaga attgatcgcg gatccgattt tagtcgtgga tatttgagat tccggacaaa        60
     gttcgcgata gtgacgaata taatcccgtg gaagcctgta tagtgcgtga aatcggtcgc       120
     aatatcgaaa acaaaggttt tgtctgcgac gcgtgtgacg cgaaggtttc gtacgccatt       180
     ttctttccaa ccgggtttga agagtcgtca agatggatgt gcaacacata gctaagttgt       240
     tggaacatca aaatacgttg ttcggtgaaa tggtgcgtca gatgagccaa cagaatcagc       300
     agcaagcggc tgcagccgta gcgccggcag tgtctccaaa tgtgcccctt ccaccacctc       360
     tttctattga cggggatatg gaagaaaata tgaacttttt tgagtccaat tggaaaaact       420
     atgccactgc aattggaatg aatgattggc cggtggcaga tgaacctaaa aaagtgagct       480
     ttttgttatc tgttgtgggt gcgccggcac tgaagaaata tttcaatttc gagctgacac       540
     aagaagataa gcaaaatccg gacacagttc tcgctgcaat tcgagcaaaa gtggtgtgca       600
     cacgaaattt gatagtggac aggttggatt tctttagtgc tgcgcagcta tcgtctgaat       660
     gtgttgatga tttcgtgtgt cgactaaaaa accttgcaaa gccctgtaaa tttggaacat       720
     tggaggctga attgttaacg tacaagatcg tgacctctaa caagtggccc catctgaaaa       780
     caaaaatgct aactatgagt gacattaact cggtgaaagc gattgattta tgtcggatgg       840
     aagaaataac agcgaagcat tcacaagtat tgtcgttgga tcgtaaaatg gatgtgaata       900
     aagtgaaaac atcgaaagcc cgcaagtgca aatattgcgg agagtggcat atttttgcga       960
     aaggttcgtg tcccgcatat gggaaaaaat gcaagaagtg cagtggtaag aaccactttg      1020
     agaaagtgtg tcgcgttgga aaagaaaact tttcgaagca aggaaaatca cgaaaagtga      1080
     aggaagtgaa ggaagaggag tacagttcgg atgggagtga ttctgaacat gaatacggtg      1140
     aaccgtccag tgattctgaa gtggaaggtg aaattggaaa gatctatgat aactcgcaga      1200
     aaggtggaag tgtgctggca gaaatcttgt tgaaggctga cggttattgg aaaaagtgca      1260
     agtgcgaact cgataccggc gccaacacga gccttattgg ttatgattgg ttgcgtaaac      1320
     tgacgaataa tcccaaccca gcgctattgc catctccgta taagctacaa gcgttcggtg      1380
     gcagtgcaat tacggttttg ggtcaagtga agattccatg caaacataaa aacaagaaat      1440
     acattttggt gctccaagtt gttgatgtca gtcacaggcc tctcctgtca ctgaaggttt      1500
     gcacaacgtt ggaattagtg aagttctgta aaaacgtgtc agtgaattct ccatcattat      1560
     catcaaaaga tgagatggaa ttattgaaaa tataccgtat tagagctgaa gaaattgtga      1620
     atcagttcag tgatattttc aacggctacg ggaaattgaa aggtgaagtt accttggagg      1680
     tggatgacag tgtttcaccg gtaatccagc agcctcggcg tgtgcccatc gcgctacggg      1740
     ataaacttca ggcagaattg gacaaactgc aggcagacgg aatcataaca agggagtaca      1800
     atcatacgga atgggtgagt aatatcctcc ttgttagacg tggctccgag ggttctacca      1860
     ccttccgaat ttgtttagac cccattccct taaacaaagc cctgaagcga ccgaatctac      1920
     agttcgttac tctcgatgaa atcctccctg agttgggtca ggcgaaaatc ttctcaaccg      1980
     ttgacgcaaa gaaaggcttc tggcatgtag tgctggatga ggaaagcagt aagttaactt      2040
     cgttttggac acctttcgga cgttatcgct ggttgaggct accttttgga atttcatccg      2100
     ctcctgagat cttccaaacg aaactccagg agattattca agggttaaag ggtgtggagt      2160
     gtttggcaga cgatttgttg atatacggtc gaggcgaaac actcgaagaa gcattgatag      2220
     atcataactg caacctggag aagctgctgc tgcgactaca gcaaaataat gtgaagttaa      2280
     acaagtcaaa gctaaaactc tgtgagactt cggttaaatt ttatggccac aatctcacca      2340
     accagggttt gaaaccagat gagtccaaag tttcttccat tacacactac ccaactcctt      2400
     cgaatagggc tgagcttcat cgttttgtcg gtatgattac atacctgagt agatatattc      2460
     ccaacttaag tgcgaattct actaacttgc gacgattgat ttccgaaaaa gttccctggg      2520
     aatggacacc tttgcagaac gaagaattcc agaagctcaa atcaatggtc ggtgacattg      2580
     aaactctacg ttattacgat gttcatcagc cattaataat tgagtgcgat gctagttcat      2640
     tcggattagg tgtagcggta tttcaacaaa acggtgtcat tggatttgcc tcgcgtacac      2700
     tatccgagac ggagaaaaat tatgctcaga ttgaaaagga gcttttgtcc attctatttg      2760
     cttgcacaag atttgaccag ttgatagtgg gaaacccgaa aaccattgta aagacagacc      2820
     ataaaccgct aattaacatc ttcaagaaac ccttattgac cgctcctaag cgtttgcaac      2880
     atatgttgct caatttgcag cggtacaaca ttgaaataca cttcgtgaca ggaaaagaca      2940
     acgtagttgc ggatgcaatt tctcgagctc cacacaacga cacaatggaa atgaagtgtt      3000
     tcaaaaagat gaacatctac cacgttttta aagaactgga agattggaag ctgtcaagct      3060
     acctgaaaat ttctgatgca tgcttgggag ccatcatcga agcaacttta caggattccg      3120
     ctcttcaggt ggtaatgagc tgtattcggt atggctggcc tgattcaatt gcaaaagtac      3180
     ccgatgcagc aaaggtttac ttcaagtatc gctatgaact atcgacacaa gacggcctca      3240
     tattccgaaa tgatcgcata gtaattccaa gaagcctcca gcgctcaatg attgatcgtg      3300
     tccacgcgag ccacaacgga atcgagtcaa ctctccggct agctcgggaa aatatttttt      3360
     ggccgggtat gaatcctcag ataaccgatg tagtgaagga atgtgcagtt tgtgctcgat      3420
     atgctgcaag tcaacagaag cctccaatgc aaagtcatcc agtacccatc taccctttcc      3480
     aggttgtatc actggacata ttctttgctg aatatcgagg tcgaaaacga aactttctag      3540
     tgatggttga ccattattca gactttattg aattggatat cttgaaggac atgacagctg      3600
     gtactctagt tgagatttgc aaacaaaact ttgcccgtta cggaattcct caattagtca      3660
     tctcggacaa tggaactaat ctagtaaacg aggagatgaa gtgtttcgcg aagtcatgga      3720
     atttcgaaca ttcaacgtcg gctccaggtc atcaacaggc caacgggaaa gcagaagcag      3780
     cagtaaaaat catgaagcgt ttgattgaaa aatccgaaga aactggagaa aatctgtggt      3840
     atgcagtgct taactggagg aatacaccga ataagatagg aagtagccca gcctgccgtt      3900
     tattcgcacg cagtacacgg tgtggtattc ctgcatcggc agaaaaatat ctcccaagaa      3960
     gtgtcccaaa cgtgtctgaa gccattttgg agaatagaag gaagataaaa tattattatg      4020
     atcgaaaatc acgtgagcta cctgtgttcg agactggatc tcctgtgtat gtgcagctac      4080
     atcctgattc cgttaagaaa tggacacctg ccgttattca ccataaggac aatgaaagat      4140
     cgtacattgt agaagccaat ggatcctgct atcgccgcga cttagtgaac ataaaaccgc      4200
     ccgccagaac cacaaccgct cattgttcaa ccaggtcatc aagaaaatca agcacctgtt      4260
     gaaccaagtg caacgtcgac tacaggtcca ccgaagcctc gattgtccac cgtcgtgatg      4320
     cctgctgcag ttcccatcag tgatcaaatt tgcgataatg cgtctgttgc ggaccagcca      4380
     cccaggtccg tggcgcctaa agtgatggat tcaactagaa ctaatcgacc aaaacgtgag      4440
     agaaagatac cagcgaagtt taacgattat gtacttgata agtgaacagt agttttaaac      4500
     tgagaagggg a                                                           4511
//
ID   Gypsy-628_AA-LTR repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 26.04, Created)
DT   17-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-628_;
KW   Gypsy-628_AA-I; Gypsy-628_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-174
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-174
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2131-2131 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 174 BP; 51 A; 37 C; 27 G; 59 T; 0 other;
     tgttgcatta tttagttttg ttgctaaaga ttgaattgtt attactggca accttgcaga        60
     gcatacacac atctctccac atgcttccat ttatgtagaa caaagatcag tcattaaacc       120
     atgtttgtag agtaaacacg tctttgcgtt tctctctgat ccgaacacac aaca             174
//
ID   Gypsy-629_AA-I repbase;    DNA;    INV; 4113 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 26.04, Created)
DT   17-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-629_;
KW   Gypsy-629_AA-I; Gypsy-629_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4113
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4113
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2158-2158 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..4071
FT                 /product="Gypsy-629_AA-I_1p"
FT                 /translation="MILRPEDVRSLIPEFIPEKITVLKWLTKIDGLKNIYG
FT                 WEERAVLHYATLCLGAVSRIWYEGVEEHITGWNDFKLRLARAFPTRIDEVD
FT                 IHNVLLKRVKRSHETYENFVYDIVCQARMVNISEAAIIKYVINGIPDSNLR
FT                 LALCTANYDTVETLLDTIYRYENQTKLHSKAQEMSSYNEKPVKNASIQCCF
FT                 NCGQRGHFAQTCGRQPSPNYVQTTVSENQENECLMGPIGNDILAMDGETQS
FT                 GENCCYTSRETTENHGRVSIEQVYFDILVRLNNRLVKSEALFDTGSPICLI
FT                 KRSLVSDKINFQVPFQNSYAGLNNSKLNILGVFNSEIVIDNYIYNLQFKIV
FT                 PDSTMRPTCILGSDFVKSNNLLVEYDGRSLQFAINNQSTTEDSFKMVTCAD
FT                 GPLFEINNIEVSTDTFLKTDVDLLDIGDSGTLLRDTNKIKSLFVENYGNIQ
FT                 TKPVRPDFKYTMKIDLSDKRPFNFSPRRLSHSQKIEVESQIEKLLKDGVIK
FT                 ESNSPYASRIVLVKKKDNSWRMCVDYRELNKITIKDRYPLPIIEEQLDSLK
FT                 NKKYFTTLDLKNGYHHLHIDPSSQKYTAFVTHMGQFEYTRVPFGLCNAPSA
FT                 FMRFINTILRPLLKKGKIRVYMDDILIATETIEEHLEILEEVFEILNRNHL
FT                 QLQLTKCSFLKTNIEYLGYKISLNGIQPSEKHIECIKKFPIPKNIHDVNKF
FT                 IGLASYFRKFIANFSVIAKPLYDLLKKDKKGFHFRELELRAFETLRDKLIA
FT                 DPILKIYSPYAKTELHTDASSHGFGGVLMQEQPNGNMHPVMYYSQRTTDHE
FT                 SKLHSFELETLAVVNCIKRFHIYLQGIKFTIVTDCIALKETLKKKDINVKI
FT                 ARWEIFLSEYDYDIIHRNSNNMKHADALSRIPEINFIGNDTDSFEGAIIAS
FT                 QIQDPEIERIRNLLEIQEDKNFEMRNGIVYKKVRGNQLLFYVPKNMIHQIM
FT                 RMHHDDFGHFGAEKVYENIIKSYWFPKMKEKISKYIENCLKCIVFSKKNFR
FT                 KDGPLNIVDKGSVPFHTVHIDHYGPLTLSNCKFKYIFVVVDAFSKYLKLYP
FT                 CKTTNTSEVLKHLKSYFANYSVPVQIVSDRGSCYTSNSFKECMQQFNIKHI
FT                 LTATACPQANGQVERFNRVLTPVLAKLVDSNPCRGFSNILQDAEHFINNSF
FT                 CRSIANTPSQVLFGINQRFSGNEDVANVLNANSEMKRDLTKIREKAIAVNR
FT                 AVQMYNKKLYDSKCKSTSVYQEGDLVYIPHHSNSGGSSKLKPHFKGPYVVK
FT                 KVLANNRYVISDIDGYQLTRLPFSGVFDPTNMKLWKTEHDQT"
XX
SQ   Sequence 4113 BP; 1473 A; 586 C; 779 G; 1274 T; 1 other;
     attcagaagt gggatgcgaa tgaaattttc ctaaaagaaa gattggacct gaaatagttt        60
     gaattttgga gaagatcttt gagaacgcta atatcacaga agattttgag agaaattaat       120
     tttggaagat atcgagtcga cggtggagct tgtgacgaaa agatgattct gcgacctgaa       180
     gatgtacgat ccttaattcc tgaattcatt ccggagaaga taaccgtatt gaaatggttg       240
     acgaagattg atggtttgaa aaacatttac ggctgggaag agcgagcagt tttacattat       300
     gcgacgttgt gtttgggagc agtatcacga atttggtatg aaggtgtcga agagcatatt       360
     actggatgga atgatttcaa acttagactg gctcgagcgt ttccaacaag aattgatgaa       420
     gtagatattc ataatgtgct gttgaagcgg gtgaagagat cgcatgaaac atatgaaaat       480
     ttcgtttacg atattgtttg tcaagcaaga atggtgaata taagtgaagc tgcaataatc       540
     aaatatgtca tcaacggtat tccagattca aatttaagat tggctttgtg tactgcaaac       600
     tacgatactg tggagacctt gttggatact atttaccgat atgaaaatca aaccaaatta       660
     cattcaaaag cacaagagat gtcaagctat aatgaaaaac cagtgaaaaa tgcaagtatc       720
     caatgctgtt tcaactgtgg tcaacgaggt cattttgcgc aaacctgtgg tcgacaacca       780
     agcccaaatt atgtacaaac aactgtatcc gagaatcagg aaaacgaatg cttgatggga       840
     ccaataggca acgatattct ggctatggac ggagaaacgc aaagtggaga aaattgttgc       900
     tacacgtctc gagaaactac ggaaaatcat ggtagggtta gcatagaaca ggtttatttt       960
     gatattttgg taaggctcaa caatcgttta gttaaatcag aagctttatt cgacacaggg      1020
     agtccaatat gtttaatcaa aagaagtcta gtttcagata aaattaattt tcaagttcct      1080
     tttcaaaatt catatgcagg tttaaataat tctaagctaa atattttagg agtttttaat      1140
     tcagagattg taattgataa ttatatttat aacttgcagt tcaagatcgt gccagattcc      1200
     acaatgcgcc cgacgtgtat tcttggatca gacttcgtaa agagcaacaa cttgttagtt      1260
     gagtatgacg gtcgatcgtt acagtttgct attaacaatc aatcaactac agaagattct      1320
     ttcaagatgg taacctgcgc ggatggtcca ctgtttgaaa taaataatat tgaggtaagc      1380
     actgacacat ttttgaaaac tgatgtagat ttattggata taggtgatag tggaacttta      1440
     ttgcgcgaca caaacaaaat caaatctctt ttcgttgaaa actatggtaa cattcaaaca      1500
     aaaccagtta ggcctgattt taaatataca atgaaaatag atttatcaga taagcgaccg      1560
     tttaattttt ctccgcgtcg cttatcacat agtcaaaaga ttgaagtcga gtcacagatt      1620
     gaaaaattac ttaaagatgg tgtaattaag gaaagcaatt ctccttacgc gagtcgaata      1680
     gttttggtga agaaaaagga caattcttgg agaatgtgtg tagattatag agaattgaac      1740
     aaaataacta ttaaggatag atatccctta ccgataatag aagagcaatt agatagttta      1800
     aaaaataaaa aatatttcac tactttagat ttaaaaaatg gttatcatca tcttcacatc      1860
     gatccttctt ctcaaaaata cactgctttt gttacacata tgggacaatt cgagtacaca      1920
     cgagttccat ttggactatg taacgctcct tccgctttca tgagatttat caatactatt      1980
     cttagacctt tattgaaaaa gggtaaaata agagtataca tggatgatat tttaatagcc      2040
     acggaaacaa ttgaagaaca tttggaaatt ttggaagaag tttttgaaat tttgaatcga      2100
     aatcatctgc aacttcaatt gacaaagtgt tcatttttga aaacaaatat tgaatattta      2160
     ggatataaaa taagtttgaa tggtattcaa ccaagcgaaa aacatataga atgcatcaaa      2220
     aaatttccaa tacctaagaa tattcacgat gttaataaat tcattggatt ggccagttat      2280
     tttagaaagt ttattgcgaa tttttcagtt attgctaagc cattgtatga tttattaaaa      2340
     aaagataaaa aaggttttca ctttcgagaa ttggaactga gagcatttga aacattgaga      2400
     gacaaattaa tagcagaccc tattttaaag atttattctc cttacgctaa aacagaactt      2460
     catactgatg ccagttcaca tgggtttggt ggtgtgctaa tgcaggagca accaaatgga      2520
     aatatgcatc cagttatgta ttacagtcaa agaactactg atcatgaatc aaaattacat      2580
     tcattcgaat tggaaacact tgccgtagtt aattgtatta aaagatttca tatatattta      2640
     caaggcatta aatttaccat tgtaacggat tgtattgctt tgaaagaaac tttgaaaaag      2700
     aaagacatta atgttaagat agcaagatgg gaaatatttt tgtcagagta tgattacgat      2760
     ataatacata ggaattctaa caatatgaaa catgctgatg ctttgtccag aatacctgaa      2820
     attaatttta tcggaaatga tacggattct tttgaaggag ctattattgc tagtcaaatt      2880
     caagatccag agatagaaag aattcgaaat ctattggaaa tccaagaaga caaaaatttt      2940
     gaaatgagaa atggaattgt gtacaaaaaa gttagaggaa accagttatt gttttatgtt      3000
     cctaaaaata tgatacatca aattatgaga atgcatcatg acgattttgg ccattttggc      3060
     gctgaaaaag tgtatgaaaa tattatcaaa tcatattggt ttcccaagat gaaagaaaaa      3120
     atatcaaaat atattgaaaa ttgtttgaag tgtattgtat tttcaaagaa aaattttagg      3180
     aaagatggac cattgaatat agtagataaa ggcagtgttc cattccatac agtgcatatt      3240
     gatcattacg ggccattaac attatccaat tgcaagttca agtacatatt tgttgtggtt      3300
     gatgcttttt caaaatattt aaaattatac ccatgtaaaa caaccaacac aagtgaagtt      3360
     ttgaagcatt tgaaatcata tttcgcaaat tattcagttc ctgtgcaaat agtttctgat      3420
     cgcggtagtt gttatacatc taatagcttt aaagagtgta tgcaacaatt taatataaaa      3480
     catattttaa cagctactgc ttgtcctcaa gctaacggtc aagtggaaag gtttaatagg      3540
     gtattgaccc cggtgctagc gaaattagta gattcaaatc catgtcgagg attttcgaat      3600
     attttgcaag acgcagaaca ttttattaat aatagttttt gtagatcaat tgcaaataca      3660
     ccatcacaag ttttatttgg cataaatcaa cgtttttctg gtaacgagga tgttgcaaat      3720
     gttttaaatg cgaacagtga aatgaaaaga gatttgacga aaatacgcga aaaagctata      3780
     gctgttaata gagctgttca aatgtataat aaaaagcttt atgactctaa atgtaaatct      3840
     acttcagttt atcaagaagg tgatcttgtg tatatacctc atcattcgaa ttccggtgga      3900
     tcgtccaagc taaaaccaca ttttaaagga ccttatgtag ttaaaaaagt actcgcgaat      3960
     aatcgttatg ttattagtga tattgatgga taccaactga ctcgtttgcc tttttcgggt      4020
     gtatttgacc caacwaatat gaaattatgg aaaacggagc atgatcaaac ataatgcaca      4080
     tcgggtcgat gtgtttgatc aggatggccg agc                                   4113
//
ID   Gypsy-629_AA-LTR repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   17-DEC-2018 (Rel. 26.04, Created)
DT   17-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-629_;
KW   Gypsy-629_AA-I; Gypsy-629_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-142
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-142
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2132-2132 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 142 BP; 47 A; 25 C; 33 G; 37 T; 0 other;
     tgtagcagtt tgttagggta agcaggcgta ggcaaaggtt gatcaggtta gcacaggctt        60
     agattgtcac tgattgtaca ttatccatcg agacacgtaa taaacaagac gttaatactg       120
     aaagctacga tcaacaactt ca                                                142
//
ID   Gypsy-62_AA-I repbase;    DNA;    INV; 4647 BP.
XX
AC   supercont1.345;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_AA_;
KW   Gypsy-62_AA-LTR; Gypsy-62_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4647
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.345; Positions     291    4937.
XX
CC   'GACCG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1505..4045
FT                 /product="Gypsy-62_AA-I_1p"
FT                 /translation="MCKSKSVVHAVQLSEEDDIDSDEESEELFIGSVESSE
FT                 SVNDWFEVVKVNKKKFSVKLDTGAHCNVVPLWLVKQLGISVRPSKTKWLVS
FT                 FSNHRLKVLGEINPVCRIKNKNSSITFKVVEESVVPVLGKATCIAQQLIAR
FT                 VDTVQVLDDSVYDGLGCLKDYVYDIDLIEDPQWEVRPARHVPHSIRSAVKK
FT                 ELDSMERLGVVEKIHAPTPVVNAMVLVKRNEKLRICIDPSQVNQNLLRRHH
FT                 PLTTIEEIATRLKNSKYFTILDCKKGFWQIRVSERTSKFLAFGTPWGRYVC
FT                 KRLPFGLASAPEVFQKVMHDTLEGIEGVEFSMDDILIHADSSDKLNKITGK
FT                 VVKRLHSAGLKLNRDKCLFNQTSVKFLGHIVTDGGLKADPDKLEAVIKLKT
FT                 PSNRSELQRALGMITYMGKFVPNLSDVTAPLRSLLAKDVAWEWGYEQDKSF
FT                 QKIKALMQSPPILKYYDLNAPVTLSVDASSHALGAVLLQQGRPVAYASRAL
FT                 TSSEMNYPQIEKEATAIRYACSKFHQYIYGKRLTIETNHKPLESIFRKPLD
FT                 RAPPRLRRIRLEVAQYNPTVVYVKGANIPIPDILSRDVANTAIAEDDEQLE
FT                 VHIVLQMTKSASAELKQHTDKDYEMQSLKSVILQGWPETINQLIPELRKYW
FT                 NFRDEMAVYDGLIFKSNQVLIPQPLRKAMLVKIHSGHAEIQSCIRRAKQVL
FT                 FWIGMGNDIQEMVETCSICQRHQRSNTKSTIILKDIPRLPFERVASDLFHF
FT                 KGKEYLLIVDSYSGYFDIKQLSETTSKRIIKHLKEWFSIHGIPQVLESDNG
FT                 PQYASAEFRQFSRQWGFEHQTSSPHFPRANGLAERYVKVAKSMLK"
XX
SQ   Sequence 4647 BP; 1449 A; 903 C; 1112 G; 1183 T; 0 other;
     tggtgtcaga agaaaccaag ctcgcgaaaa tattgaattt taccggaaaa aatcgataaa        60
     atcgcgatga aatatcctgg cgagacagtt aagtcactaa tcattcagtg cgaatagaag       120
     ataagtgtag tggcgtgaat attaaagctg aatcccgtca aacaaaatcg atcttcatag       180
     cgatccgata aaatggcgtc gtcagcaggc ttgaaaccgc caaagcccat agtgctgggg       240
     gaaaatatgg ccgcccagtg gaagagttgg gttcggcaat attcgtggtt cgcgattgca       300
     acgcaacttt cggaaaaatc gaatgaggtg caggcagcaa cattcatgag tgcgataggg       360
     gaagactgtg tgcgaatttt cgatactttc tgcttgcggc cggaagaaga aaacgatgta       420
     gaagttataa aaacaaattt tgacgagtat tttctaccga agtcctgtat tacttttgaa       480
     cggtacaact tcaatcaaat cgtgcagcag gaggacgaac agtttgacag tttcgttact       540
     cgggttagag aacaagcgaa aaaatgctct ttcagtgtgc ttcacgattc acttgtaaaa       600
     gatcgaatca taattggagt gagatataca agcttagtgc cacagctgtt aaacgacgat       660
     ttaactttgc agaaaacgat cgagttgtgt cgtaatttcg aggccacgac actgcagtca       720
     aaagcgttgg ccggcgaaag caaaattgac acagtgaaag taatgaagaa gaagatgaat       780
     gcttgccggt ttgaagaaaa ggatgatgta aggtaaaaag gtgtaatacg ccccccctta       840
     aggaaaaact gctctatcgc agttgcaaat gcatcacttc taaagttttt catgtcaatg       900
     tgttgctcat ttagttggtc atgctctgca tgcaactttc tctttccaga ttgctgctaa       960
     aatgtttact agatgttttt ttgtaaaccg tcccaatgtt tacatttcaa aacatcacgg      1020
     gcaatatgcc cctcccatag aaaaaaggtc cacagcattg taaaaatgtt tccaacgaga      1080
     attccaccac ttgctaagct taaaggggtc cattagcagt cgtcttccgg taaaagtttt      1140
     tgcaataagt acaatagtaa aggaagggct aaagcggcaa ggcttgctta ttggacgcaa      1200
     aattttacgc caaaaacctg attttcgtta tttttagaat ttctattgat tgttaatact      1260
     tctcaaagaa catatatgcg aaacatcatt tattcgcgaa tagtgaagaa atgtaatcat      1320
     atttacgtgt aaaagaagcc tcaatcccgt gaaacttcag aggggcgtat tgccccggtg      1380
     gggcgtatta caccgagtta ccctattcca gtgcaaaaac tgtgggcgga agcatgcaaa      1440
     gcgttcttgt cccgcgtttg gtaaaacgtg tcggaaatgt ggtcagccaa atcactttgc      1500
     tgtgatgtgc aaatcgaaaa gtgttgtaca tgccgttcaa ttatcggaag aggatgatat      1560
     tgattccgat gaagaatcag aagaactgtt cattgggtca gtggaaagtt cagaaagtgt      1620
     gaatgattgg tttgaggtgg tgaaagttaa caagaagaag ttttcggtga agcttgacac      1680
     aggtgcccat tgtaacgtag tgccgttgtg gttggtcaaa caactgggaa tcagtgtacg      1740
     cccctctaaa acgaaatggt tagtttcgtt ttcaaatcat cgattgaaag tgcttggtga      1800
     aataaaccct gtgtgcagaa tcaaaaataa gaacagcagc atcacattca aagtagttga      1860
     agagtcggtt gtacctgtgc taggtaaggc aacctgtatt gcgcagcagt tgatagcgcg      1920
     ggtggatacg gtgcaagtgt tggatgattc ggtgtatgat ggtcttggct gtttgaagga      1980
     ctatgtttac gacatcgatc tcatcgagga cccacagtgg gaagtgaggc cggcacgtca      2040
     cgtcccgcat agcatcagat cagctgtaaa aaaggagttg gattccatgg agcgtcttgg      2100
     agtggttgaa aagattcatg cacctactcc ggtggtgaac gcaatggttc tggtcaaacg      2160
     aaatgagaag ttacggatct gcatcgaccc atcacaggta aaccaaaatt tattaagacg      2220
     tcaccatccc ctgaccacca tagaagagat agcgacccgg ttgaaaaatt cgaaatattt      2280
     tacaattctt gattgtaaga aagggttttg gcagatcagg gtttcagaaa ggacgagcaa      2340
     atttctggct ttcggtactc cctggggaag atacgtctgc aagcggttac cttttggact      2400
     tgcctcagct ccagaggtct ttcaaaaagt tatgcacgac acgctagagg gaattgaagg      2460
     agtagagttt tccatggatg acatcctgat ccatgctgac agctctgata agttgaacaa      2520
     gattacgggc aaagttgtta aaagactgca ttcagctggg ctcaaattaa atagagataa      2580
     atgcttgttc aatcagacta gtgtaaagtt tttggggcat attgtcactg atggcggttt      2640
     gaaggcagat cccgacaaac tggaggccgt tattaaactt aagacaccat caaataggtc      2700
     tgagctccaa agagcattag gaatgataac gtacatgggg aaattcgtac ctaatttgtc      2760
     agacgtgaca gccccattga gaagtctgtt ggctaaggat gtggcttggg agtggggtta      2820
     tgagcaagac aaatcatttc agaaaataaa agctcttatg caatctcctc caatactgaa      2880
     gtattatgat ttgaatgcgc ctgtaacgct atcagtggat gcaagctcac acgcacttgg      2940
     ggctgttttg ctacaacagg gtcgcccagt agcgtacgca tccagagcgt taacttcttc      3000
     ggagatgaat tatccccaaa ttgaaaaaga agctaccgca atacggtatg cttgctcgaa      3060
     gtttcaccaa tacatatatg gtaaaaggct aacaattgaa acaaaccaca aaccattaga      3120
     gtcaattttt cgtaagccac ttgatcgagc tcccccacgt ctccgtagaa tcagattaga      3180
     ggttgcccaa tataacccaa cagttgtgta cgtaaaagga gctaacattc ctatccctga      3240
     tatcttaagc cgcgatgttg ccaatactgc aatagctgag gatgacgagc agttagaagt      3300
     tcatattgta ttacagatga ccaaaagcgc aagcgcggag ttgaagcaac acaccgataa      3360
     ggattacgaa atgcagtctc tgaagtccgt aatattgcaa ggttggccag aaactataaa      3420
     tcagttgatt cccgaacttc gtaaatactg gaattttcga gacgagatgg cagtttatga      3480
     tggactaatt ttcaagtcaa accaagtact gattccgcaa ccgttgagga aggctatgtt      3540
     ggtgaagata catagtggtc atgcggaaat tcaaagttgc attcgaaggg ccaagcaggt      3600
     gttgttctgg ataggcatgg gtaacgatat tcaggaaatg gtggaaactt gctcaatttg      3660
     tcagcgtcat caacggagta atacaaaaag cactatcatt ctgaaggaca ttcctagact      3720
     tccatttgaa agggttgcgt ccgacctgtt ccattttaag gggaaagagt acctccttat      3780
     cgtcgacagt tattctggct atttcgacat aaagcagcta tccgaaacaa cgtctaagcg      3840
     aatcatcaaa catttgaaag aatggttctc gatccacggt attcctcaag tcttggagtc      3900
     ggacaatggc cctcaatacg cctcggctga gtttcgtcaa ttcagtcgtc agtggggatt      3960
     cgaacatcaa acgtcaagtc ctcattttcc cagggcgaac ggattagctg aacgatatgt      4020
     aaaggttgct aaatcaatgc tgaagtagtg cagcgaggac caatcagata tccatttggc      4080
     cttacttcac atgcggaata caccacgtag tagctgcata ccatcaccta acgaaagact      4140
     catgggtcga ttggtacgtt ccaacatgcc aatgacgttg gaagcactca ggccaagagc      4200
     agctattgga acgtgaacga ggaatccaca aggattatgc agatagagga agcaaagaac      4260
     caccaaaatt cgttggaagt gagaaagttc tcattcagga tcaagcgtcg caaagatgga      4320
     cacatggaac cgtattgaaa ccacttgaag aaaaccgttc gtatctagtg accgatggcg      4380
     agagaacact gaggaggaat gctcatcatt tgcgcaagct acgaggagga atggaagaaa      4440
     gtgtgcaaga aaccgaacaa gaagcggcaa acgactccaa tgatactcga cgtgaatcat      4500
     cagctgggac cagcatgaac cgaagtcaag ttttgttaag cgaaacatca agtggaaccg      4560
     caccttcggc aacatgtgta actcggtctg ggcgtacagt gaagccaaag aggttcgatg      4620
     aatttcaata ttattaagaa gggaaga                                          4647
//
ID   Gypsy-62_AA-LTR repbase;    DNA;    INV; 126 BP.
XX
AC   supercont1.345;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_AA_;
KW   Gypsy-62_AA-I; Gypsy-62_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-126
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.345; Positions     165     290.
XX
SQ   Sequence 126 BP; 43 A; 27 C; 16 G; 40 T; 0 other;
     tgtaacgtat aagcgtaaca tgtgtttatt ggaatacctt cacataacag tatcttgaac        60
     cttaccttta taccatgaac catacctgac aataaacatc attgattgac tcgtaactag       120
     cttaca                                                                  126
//
ID   Gypsy-62_AnFu-I repbase;    DNA;    INV; 5669 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5669
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2946-2946 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ORFs cannot be reconstructed.
XX
SQ   Sequence 5669 BP; 1730 A; 1490 C; 1238 G; 1201 T; 10 other;
     actggtgacc ccgattgaac aagtgtccga cctaactcgg gtatccgtac tctaaagtaa        60
     aaatcgcgag ttagggattc tcaaagtgat cgctcataaa aaagcatttt gctcatcgca       120
     ttaaacagtt cgatcgccga ccgatcatcg aagtgcggac attcgaccac gtgcgaaata       180
     aaatggcgac cgaaaacgcc gaagagcaaa atggtgcaat cgtagtgaaa cgcgaagcaa       240
     atgacgctac agtgattgcc aaaattaact accccgattt cgacccagac gatatcgaaa       300
     cgtggttcat gtgcctcgaa gcctcgttca acgtgaatag catcaaactg gacaagttac       360
     ggttcagcac tgtgatcgtc gcacttggcc cacgagcgaa attcgtacat gcggttatta       420
     cacagtgcca agccagtaat aacagcaaca agtacgaaac actaaaggcc gccgttatcg       480
     cgcatttcca gccatcggaa acacaacgcc tgttcagttt gctgtccgga atgtccatag       540
     gagaccagaa acccagcgtt ttactgtccg agatgcgccg cttaggagga gcaggttgcc       600
     ttaagcagca gaaggagacc cttggtaaac gttgggaata gcattgtccg ttacgcggca       660
     ccatcgtggg gacggacgct tcttcagaag gacgttcacc ggaccacggt tcagaggacg       720
     caccgcacag gagttcttcg agtggccagt gccttccaaa cggtctccta cgatgccgct       780
     tgcgtggtcg caagcactat cccgttagtc cttctcctag aggaggacat ccgctgccac       840
     gacgaaaagg tagcgagggg aagtccagga ccagacatac gaaagcggca aagcgaagag       900
     accatgggac gctggcaaca acaatggaca gccggagcgg ggcagccgag atcgccgggg       960
     atgaagacga ggagaattat cccggacatt atgtcctggg taaatcgcaa gcacggagaa      1020
     attgattttt atctctctca actctttaca gggcatgggt ttctccggag ctaattcgtc      1080
     gaaaaaggca tcctcgacgg ctcgccaaac tgcccggtgt gtgaacacca agtggaagat      1140
     gtcgaccacg taatgttcca ctgtccacgg tttgctcgaa cccaacacga gatgcagcag      1200
     cagagccaca cccgcttgac gatagaaaat cttgcagcgg aaatgtgtgc caacagcaac      1260
     acatgggaag tagtccacat gggaccgccg caaggaccat cttcagaaac ctccaagtga      1320
     gatggaatga ggaaagtcca cctacggcca gacgagacga caacaacgac ggcggaacac      1380
     ggaacaaacg ggacagcaac agctgccgcc gtgaccgcac caaaggatga cgacaacgga      1440
     agcagcagca gcagcaacga gtaaccagag cagcagcagg agctagaccc caccggaagt      1500
     agcggctacg gacgggcgga attaagcagc agcagcggaa ggaaggcacg aagcagcagc      1560
     agcagctgag acaactagga cggatgacgc agtagcacat tggaagcaac agcgcgtcaa      1620
     caggatgggt gcatcgcaca aacgttcctg catggagtac tacgcacatc aagcgcatcg      1680
     gcagggttcg gatcaggtcg aggagtggtt tagttagggt ccatcggctg ccgggtcgct      1740
     tcacgggccc agctcacgat gaatcccaca taacccatct cggagggatt ggtttgtagc      1800
     cgcaagccgc ccttcgaggt gggtaccttt tgaaggttcc ctcccgttaa caaaaaaaaa      1860
     aaaaaaagga ggagcaggtt gtaccgacac cgttttaacg aatctttggt tacgagccct      1920
     gcccaacaca acacgtgcaa tcatcgccgc tatgccgacc gctacgctgg atgaaaaagc      1980
     aaaagtcgct gacaagatcc tggaagcccc acgtgaacag atcgcctcgg tccaacaacg      2040
     cgaagaagca gcatccatca gttcgcttga acaacgtatc gaagccctca cacaacgctt      2100
     ggaagaagca ttaacaggta acccccacag acgaagccgt tttactaata ctcgttcccg      2160
     ttcttgcagc cgacgggatg gaacaccagc cagaaacaaa cgtggctgga tctgctggtt      2220
     tcatttccga catggtgccc tggctckcaa atgcgaaaaa caaaaaagcg gacaacccga      2280
     acgtaccgtg catttttttc gacgggaagg tcgagacata ctctcgacca cgaccgatgt      2340
     aaacggaktc ccaccggcag catacaacca ttctgttgcc agcaaccctg catccgccac      2400
     ggatagtaaa agcagcagca ataatcgtgt acaacgcata catatccacg tctcgagaat      2460
     atcaaatcaa tttctaattg acaccggagc ggacgtttct gttttaccac caaccttaaa      2520
     ggagcgtaat tcaccaaaac attcgcagca gcttttcgcc gcgaacggta ccccaataca      2580
     cacgtacggt accaaacgaa taactgtcga tctcggccta cgacgatcct ttgtgtaggt      2640
     ttttatcatc gctgatgtga attcgcctat cataggtgcc gactttttga agcattacga      2700
     tctcctcgtt gacctccgca gaagcaagct gattgacaac acgacacggt tagaaatcga      2760
     taacatcaac gcagtgaccg aacctgctat tacaactttt gatgtaactt cgccgtttaa      2820
     cgcaatcctt aacgaataca aagacatcac tgttttaaac atgaagcaca agcctagcca      2880
     gacgaacacc gtccaccaaa tcatcaccaa cgggccaccc gtattttgtc gacctcgccg      2940
     attgcctatc gataagctga aagaagcaaa agctgaattc caatttttga tggaacaggg      3000
     aatttgccaa ccctcaaaaa gtaactgggc cagtccatta caccttgtaa ggaaatcgaa      3060
     tggaaagtgg cgaccgtgcg gagattatcg gaatctaaat gcgatcaccg ttccagaccg      3120
     atatccagta ccgcatatcc aggacttttc aagcatccta cacggaaaaa caatattttc      3180
     atgcatagac ttgcaaaggg cataccatca gatccctgta tctccagaag atatcccaaa      3240
     gacggccata acaaccccat tcgatctttt cgaatttaag tacatgacat ttggtttgag      3300
     aaatgcagga caaacccttc aaagacattt gcacgccatc ctaggcgacc ttgattatgt      3360
     atttccatac gtagatgatc tgtgtatcgc ttctgaaaac gttgagcaac acaaacatca      3420
     ccttcatgaa gttttcaaac gattgagaaa aaacagtctt gttatcaacc ctgcaaaatg      3480
     tcaaattggc caaaaatccg tcaattttct cggacatcaa gtcacagcag acggaataca      3540
     accaaaacca aacaaggtac aagccatttt agatatgcca agaccaacaa atgcaaaaga      3600
     gatgaaaaga tttctaggta ccatcaattt ctatcgtcgt ttcatcccgc gcgcagctga      3660
     gaatcagcgt atccttcaag caatgatctc tggcaacata aaaaatgaca ctacatttct      3720
     agagtggaac gatgctacca acgaagcatt tcaaagatgc aaacaagatt tagcaaacgc      3780
     tactatgctt gcacatcctt ctcctgaagg aacactctcc cttgatgtga atgcttcaaa      3840
     tacatgtatt ggcgccgttc ttcatcagat cactataaaa ggaccacagc cactcgcatt      3900
     cttttcccgc aagctgagtg aaagccaaca aaagctgagt acatacgatc gagaactaat      3960
     cggaatgtat gaagcagtta aacactagtt aattttcctt acgccaattt tggcataaaa      4020
     aaactttatt tctccttgag ctctaaacta agactaaaaa ctatcgctgg tgtcgcgcat      4080
     aactgatgtt gcgttcggat gctggcgtgc tgactaagcc gtttgcgtat gtttacgcat      4140
     agctggtggt ccgtcgggtg gtggcttgct gactaagccg tttgcgcatg tttacgcata      4200
     gctggtggtc cgtttgcgca tagctggtgt cgcgttcgag tggtagcgtg ctaactcact      4260
     tcaaagatat cctacaasct cgagaattct gtatatacac agatcacaag ccgsttacca      4320
     ctgctttcca acagcgtcca gaaaaagcaa caccaacaca acaacgcaga ctaagctaca      4380
     ttagcgaatt caccaccgat atccggcatg tatcgggcga cgcgaataaa gttgccgaca      4440
     tgctgagtcg catcagtacc atcaccgata ccaaaacsat cgactacaat cgcatggctg      4500
     agctgcagaa atctgatcct gaccttaaag attttttaga gaatccaccg acgaacacct      4560
     cagttmtkct taaacsttta aaatcaccct tagcagatac acctgtctac tgtgacatct      4620
     ccactgaagc cattcgtccc ttcgtgccaa gcgaattcag aaagcaaata atcaaacaaa      4680
     tgcatagcgc ttcacaccct ggcatccgcg caaccacccg tctagtatca gaccgtttca      4740
     tttggccatm tcttcgtcgc gattgcaaaa cattcgtgac caactgcata ccatgccaaa      4800
     aatctaaaat acaacgccac aacagaacac caatatcgca aatcaaaacc cctgatagtc      4860
     gttttgcaca catacacatg gatctcatag gaccattacc accatctgaa ggaaacctgt      4920
     attgtcttac tatcatcgac aaatttacaa gatggcctga gatttatcct ctaccaaaca      4980
     tgactgcaca caccgtagca cgtgcattca taaacggttg gatagcgcga tttggggtac      5040
     caacaaacat taccaccgat tgcgggagac agttcgagtc agaactgttc cgtacactta      5100
     caagcwtgct tggcataaca cacctacgca caactccgta ccatccacag gctaacggac      5160
     aaatcgagcg catacatcgt cagctcaaag cagcaataat gtgccaccaa aactccaagt      5220
     ggacagaagt gttgcccatt gtcctcctag gtatgcgatc ttccctgaaa gaagatctac      5280
     aggcaacagt aacgcagctg aaacaaatga tggcaaagat aattctcaga ccaaccagca      5340
     accacaatat acgagaaact ccgttcacgc aaaaagactt gcattcatgc gcacatgttt      5400
     tcatccgagt cggatccatc aaaccacctc ttacgcaacc ttatgatggg ccataccgag      5460
     tggtccgtcg gaagaaaaaa gttttcattg tagacgtgaa aggaaagaac atcgcggttt      5520
     cgatcgatcg tctgaaagca gctttcatac aagcagacac caccacgcaa cagcttcccg      5580
     aaccagtcat tcccgatcct tcgtacaaaa cgcgatcagg acgcagagta actattccca      5640
     agcgctatta aaatctaagg gggaagtag                                        5669
//
ID   Gypsy-62_AnFu-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-190
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2874-2874 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 190 BP; 64 A; 47 C; 31 G; 48 T; 0 other;
     tgtggcgacg ttgtgcaaac cgtactttat acgtcttaag tacaagtacg ttacgcacac        60
     accgcgtgcg tattgcaacg cacactaccg cgacaatgta ataaaacaca ttacacgttt       120
     taataaagga ctagtatacg taagacaatc catcgatacg catccattta tttcaactaa       180
     gaaccccata                                                              190
//
ID   Gypsy-62_CQ-I repbase;    DNA;    INV; 11387 BP.
XX
AC   AAWU01038191;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_CQ_;
KW   Gypsy-62_CQ-LTR; Gypsy-62_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-11387
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 503-503 (2011).
XX
DR   Genome; AAWU01038191; Positions    8982   20368.
XX
CC   Positions [3984-4451] - Reverse transcriptase
CC   Positions [6066-6488] - Integrase core
CC   'GTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1147..2895
FT                 /product="Gypsy-62_CQ-I_1p"
FT                 /translation="MEHLEAYIDAELSNLKKSINKPRSEQNTLDKIELVND
FT                 YFQQYEALVRNKKSKSSAEISKIIDSNHNRVREKVEKALDILKNPKHETNS
FT                 DVKDDNDKKSKTNNTNTAEEEKVLVLIERSTDDEIKDLKLSDQLSNLEWVS
FT                 DKIDTFKDNCKKYNRLVEEIKTKVNSEYFKNILIGQNRFLEKADEAYEFLK
FT                 EAEKKLIKNNVTQNQNKKPSKIIIQENTNKVQTVLGNKNYHEIQIFNFPMK
FT                 LAIQCIPDFHGAKNELDPFLFQIDQFASQLPYGVDEASLINVVLMKLKGRA
FT                 LDRTNKIRGKNWAETRENLIKEFSSVSSVENILQKIETLEQGQNENFKNYK
FT                 KRALNILNEISIIEQKDNIDGQFARRSLKIHFLGGLKNCNLKQLAKTQRDK
FT                 NFTELLDYLDQEFIECEQIDDIERRLQACKVSKYNFQKQSNNSAYRNFSRW
FT                 NDTRPDIATNWNRNHNYLPNNRNNQRPTHQTNTNQYIRQNQYQENYNRNYN
FT                 NYQLQPKANQQSLSNNISRNYPERMDQRNYQPQINETRNRYPNSQQNRIQQ
FT                 IPRYQNQNRQRSENYQNNRYNNNNTNSNQDNRYPKN"
FT   CDS           3195..6488
FT                 /product="Gypsy-62_CQ-I_2p"
FT                 /translation="MGYSVFNNHEKVTLSTISESVTLSIGTVMVHLLVGNT
FT                 IFITKFSVMKNLPVPGIIGADFLKKHTLFISENFEFLVLKTCNNTNDNENV
FT                 HDRKTNTIANCYENNPRFYQNRRNEVKEAEQPINNYNEAPFLDTEYQEEVT
FT                 SQELDLDTDRDCDVIEYKQFKKVRGCERMEQLLNIIKLDHLINGSYRDIKS
FT                 IIQKFNHIFFLEGDELTYSRAAMHEIETTTNIPINKRQYRMPESTKSHIDE
FT                 QIAEMLKLGIIKPSKSPWNAPVLCVPKKCDANGNKRYRIVVDFRALNLITK
FT                 PFVYPIPLINEILDNIGNSKFFSSIDLKSGFYQIPIDSRDATKTAFSTSKG
FT                 HYEFTRMPMGLEKRPSTFQKLMNTILYEIQPVKAFVYLDDIVVFGTTIEEH
FT                 NLNLCKILEALSKNNLKVEPEKCNFLKKEIKYLGHIIDENGIRPTDENIKT
FT                 IKNMKRPQTIRDVRSFLGTVNFYGKFIPNMADKRKHLNNLLKKDTKFIWTK
FT                 ECEDAFNVLKNCLISEPILVRPNFKDTFVITTDASDYAIGAVLSNEKTNDH
FT                 PIAFASRALSHSEKKYFIIEKELLAIVWAIEYFKHYIFNQHFIVYTDHRPL
FT                 IALWRLKETSPTLSKLRLKIQGIGCEIRYKKGKENIVADFLSRMQHEEIKI
FT                 HNTEKISENLSNNIVAVVTRQQRRQQTNSPNNIINNSNYNKSIDDNENQTN
FT                 KLFNDDDGEDFNTTVDSLQAMDIEDETIDVSSKQFSLDDFFDAQNNDELDF
FT                 KLLKFSKTLIDFDSIDGTFVIINSKTAFKELSQLIDLPHGMKDYLDGKTFS
FT                 FPMHKIWGIILNGSKRSTINIEELFDGFLEGLTKCPNFAKSAENIQIISFR
FT                 NLQRFPGINILRFFANKFEKFFTLYASEEERIFVKVEDRETVLKEFHDAPL
FT                 GGHVGGKRMLKRISPLFKWDNMKRDVENYVRQCESCQKNKIWPTNKIPMKI
FT                 TTTSSEPFQKIYMDIIILVQSEDNNRYGLVIQDDLTRFLTVAPMPDQESET
FT                 VARTFVDYFICRYGCPLEVVTDQGANFMSCLMKNVCKLLKIKKICTSAYHP
FT                 QANLVERSNRELKIYLRQFILGNPESWDSLLPFFTFEYSLL"
XX
SQ   Sequence 11387 BP; 4763 A; 1725 C; 1694 G; 3205 T; 0 other;
     gtggtgacag caaaattcca agaacggaag gagacgccat cttggattgg aagaaaaaac        60
     cagtgccgac atgaaaattt ggtaagtact tttacaattt taactaatta atgcaactaa       120
     tcaactttga acaatcgtct gaaccaattt ttttttaaat attagaatct tttttacatt       180
     attctgatat tgtctttttc caaaacattt tctttgaaaa aaaagtgttt cattaatttt       240
     gctttattga aaaagaaaga gaataaaaag tgtacaaaaa taaaattttc ttattgagta       300
     ttgaaaaatc gcaaagaaaa aaacaaagcg aaaaaaaaaa acaattattt taaacgcgac       360
     atcgtttact aaccaacgga ctgaagcccc cacccgtggt aagcgacagt tcaaatatca       420
     caaaagtgca tactaaacca aaatttcaaa actgaaaaat aaaaataaaa tcgaaattta       480
     aacgcgacat cgtttactaa ccaacggact gaagccccca cccgcggtaa gcaacagttc       540
     aaatatcaca aaagtgccta ctaaatcaaa aattcaaaat tataagaaaa atgagtgatt       600
     aactacactg aaataaaaaa aaaattaata aaaaataacc gtgattcgcc tactaattca       660
     ggaactctag cccccaccag cggtaagcga aagttcgaat atcacaaaaa tattttacta       720
     aaccaaacag atcaaacccc ttaaaaatat acagtacaag aaaaataata aaataataac       780
     cgcgattcgt atactaattc aggaactcta gcccccacag tggtaagcga aagttcaatc       840
     cgaaatagtg aaacactaaa ccaatcaatc aaatcataat attaaagaca aatatcaaac       900
     cagtaaacga gatttcgcct actaattcag aaaccctagc ccccaccagt ggtaagcgaa       960
     ggtttaatcc gaaaagtgaa attactaatc caaattctca gaaaaataat aatcaaataa      1020
     acaaaaacca acactcaaca agaaaagaaa aagtaagtga aataaaaaaa aattatctca      1080
     aaagtacacg tttatcagat tgaatttttt attcatttct cttcaataaa aaaaaagaaa      1140
     tcaaaaatgg aacatcttga agcatacatt gatgcagagc tttcgaactt gaagaaaagc      1200
     atcaataaac ctaggagcga acaaaatact ctcgacaaaa ttgaattagt taatgattat      1260
     tttcaacaat atgaagcact tgtacgaaat aagaaaagta agagcagtgc ggaaatttca      1320
     aagataattg attcaaatca caatagagtt cgcgaaaaag tggaaaaagc tttggatatt      1380
     ttgaaaaatc caaaacatga aacaaattca gacgttaagg atgataatga taaaaaatca      1440
     aaaactaata atactaacac ggctgaagaa gaaaaagttt tggtactaat tgaaagatca      1500
     acagatgacg aaataaaaga tttaaaatta tctgatcaac tttccaactt ggagtgggtc      1560
     agtgataaaa ttgatacatt taaagacaac tgtaaaaaat ataacaggct tgtcgaagaa      1620
     attaaaacca aagtaaattc tgaatatttc aaaaatatac taatcggcca aaacagattt      1680
     ttggaaaaag ctgatgaagc ttatgaattt ttaaaagagg ctgagaagaa attaatcaaa      1740
     aataacgtta ctcaaaacca aaataaaaaa ccatccaaaa ttattatcca agagaataca      1800
     aataaagtcc aaacagtact tggtaacaaa aactatcatg aaattcaaat ttttaatttt      1860
     cccatgaaat tggcaattca atgtattcct gattttcatg gagcaaaaaa tgaactagat      1920
     ccttttttat ttcaaattga tcaatttgct tcacaattac cctatggggt ggacgaagca      1980
     tcgttgatta atgtggtgct catgaaatta aaaggcagag cacttgatag gacaaataaa      2040
     attcgcggca aaaattgggc cgaaacaagg gaaaatttga ttaaagaatt ttcctctgtt      2100
     tcatctgttg aaaatattct acagaaaatt gaaacattag agcaaggtca aaatgaaaat      2160
     tttaaaaatt ataaaaaaag agctttgaat attttgaatg aaatttcaat catcgaacag      2220
     aaagataata ttgacggaca atttgctagg agaagtttaa aaatccactt tctgggtggt      2280
     ttgaaaaatt gcaatttaaa acagttagcc aagacgcaaa gagacaaaaa ttttactgaa      2340
     cttctagatt atttggatca ggagttcata gaatgtgaac aaattgatga catcgagaga      2400
     cgtttacaag catgtaaagt ctcaaaatac aattttcaaa aacaatcaaa taattccgct      2460
     tatagaaatt tttcaagatg gaatgataca cgtccagata ttgcaacgaa ttggaacaga      2520
     aaccataatt atctaccaaa taatagaaat aatcaaagac caactcacca aacaaacaca      2580
     aaccaatata ttagacagaa tcagtaccag gaaaactata atagaaacta taataattat      2640
     caactacaac caaaagcaaa ccagcaatca ctatctaaca acatttcaag aaattatcca      2700
     gaaagaatgg accaaagaaa ctatcaacca caaattaatg aaacaagaaa tagataccca      2760
     aattcacaac aaaaccgaat tcaacaaata ccaagatatc aaaatcagaa ccgccaacgt      2820
     tccgaaaatt atcaaaataa tagatacaac aataacaaca ccaatagtaa ccaagataat      2880
     cgctatccaa aaaactaata actgggggtt ttcaaaaatt ctacaaccaa tcataccaaa      2940
     ggaataaaca tttatttgaa gcaaacacaa atttaagtca aaacacaaat cagaaaaatg      3000
     gtagaatttt tgcaagaaaa attgaaaact tcctagaata taacccccca cacgaaacta      3060
     ttccgattat ccttacacca aactaccaat ttcgaataag aattgcgtct tcgaaaactc      3120
     cacgtcataa agtaaaattt ttactagaca caggagcatg cacgaactta attaggaaaa      3180
     acgttttaaa ctcaatgggt tattcagttt ttaataacca tgaaaaagtt accctttcaa      3240
     caatttcaga aagtgttact ctttcgattg gtacagttat ggtacattta ttagtgggaa      3300
     acacaatctt tataactaaa ttcagtgtca tgaaaaattt acctgtgcct ggtattattg      3360
     gtgcagattt tcttaaaaag catactttat ttataagtga aaattttgaa tttttggttc      3420
     taaaaacgtg caacaacacg aatgataatg aaaatgtcca tgatagaaaa accaacacta      3480
     ttgcaaattg ttacgaaaat aatcctcgtt tttaccaaaa tcgaagaaat gaagtgaagg      3540
     aagctgaaca accaataaat aattacaatg aagcgccttt cttagacact gagtaccaag      3600
     aagaggtgac atcacaagaa ctcgatttag atactgatcg tgattgcgat gttatcgaat      3660
     ataaacaatt taaaaaggtt agaggttgtg agagaatgga acagctactg aatattatca      3720
     aattagacca tctaataaat ggatcttata gagatataaa atcaattata cagaaattta      3780
     atcacatatt ttttctggaa ggtgacgaat taacatattc aagagcggct atgcacgaaa      3840
     ttgaaacaac aactaatata cctataaaca aaaggcaata tagaatgcca gagtccacaa      3900
     aaagccatat tgatgagcaa attgcagaaa tgttaaaatt gggcattatt aagccaagta      3960
     aaagtccttg gaatgcacca gttttgtgcg taccaaaaaa atgtgatgca aatggaaaca      4020
     agcgctacag aattgtagta gattttcgag cgcttaactt aattacaaaa ccatttgtgt      4080
     atccaatacc gttaattaat gaaattttag acaacattgg taatagcaaa tttttctctt      4140
     caattgatct taaatcggga ttttatcaaa ttccgattga ttctcgagat gctacaaaaa      4200
     ctgcattttc gacatcaaaa ggacattatg aatttacaag aatgccgatg ggtcttgaaa      4260
     aaagaccttc aacattccaa aagctaatga atactatttt atatgaaata caaccagtaa      4320
     aagcgtttgt gtatttagat gatatagttg tttttggtac aacaatagaa gaacataatt      4380
     taaatttatg caaaattttg gaagctttga gcaaaaataa tttaaaagtt gaaccagaaa      4440
     aatgcaattt tcttaaaaaa gaaattaagt accttggaca cataattgat gaaaacggta      4500
     taaggcctac agatgagaat attaaaacaa tcaaaaatat gaaacgtcca caaacaatac      4560
     gagatgttcg gtcgttttta ggaacagtaa atttttatgg aaaatttatt ccaaatatgg      4620
     cggataaaag aaaacatttg aataatcttc ttaagaaaga tacgaaattt atttggacaa      4680
     aagaatgtga agatgcgttt aatgttctga aaaattgttt gatttcagaa ccaattttag      4740
     ttcgaccaaa tttcaaagat acttttgtta ttacaaccga cgcaagtgac tatgcaatcg      4800
     gagctgtact atcaaatgaa aaaacaaatg atcacccaat agcgtttgct agtagagcat      4860
     taagtcattc agagaagaaa tactttataa ttgaaaagga acttctcgca attgtatggg      4920
     cgattgaata ttttaaacat tatatattca accaacattt cattgtttat acggaccaca      4980
     ggccgttaat tgcattatgg agactaaaag aaacttctcc tactctttcc aaattaagat      5040
     taaaaatcca aggcattgga tgtgaaatta gatataaaaa agggaaagaa aatattgttg      5100
     cagacttttt atctcgaatg caacacgaag aaattaaaat tcataacact gaaaagattt      5160
     cagaaaattt aagtaataac attgtagctg ttgtaaccag acaacaaaga cgccaacaaa      5220
     caaattctcc aaataatatt attaacaatt ctaattacaa taaatcgatt gatgataatg      5280
     aaaatcaaac taacaagtta tttaatgatg atgatggtga agatttcaat acaaccgttg      5340
     attctttgca agcaatggat attgaagatg agacaattga tgtttcgagt aaacaattta      5400
     gcttggacga ttttttcgat gctcaaaaca atgatgagtt agattttaaa ttacttaaat      5460
     tttcaaaaac attgattgat tttgattcaa tagatggaac gtttgtaata atcaacagta      5520
     aaactgcttt taaagaattg agtcaattga tcgatttacc acacgggatg aaagattatt      5580
     tagacggaaa aactttttca tttcccatgc ataaaatatg gggtataatt ttaaatggtt      5640
     ccaaacgttc gactattaat atagaagaac ttttcgatgg atttttagaa ggtcttacaa      5700
     aatgtccgaa ttttgcgaaa tccgcagaaa acatacaaat aatttctttc agaaacttac      5760
     aacgttttcc gggaatcaat attttaagat ttttcgcaaa caaatttgaa aagtttttca      5820
     cattgtatgc gtctgaagag gaaagaattt ttgttaaggt agaagatagg gaaacggtat      5880
     tgaaagaatt ccatgatgct cctttgggag gtcatgttgg tggaaaaaga atgcttaaaa      5940
     gaataagccc actttttaaa tgggataaca tgaaaagaga cgttgaaaat tatgtgcgtc      6000
     aatgcgaatc atgtcaaaag aataaaatat ggccgacaaa taaaataccg atgaaaataa      6060
     caacaacttc atcggaacca tttcagaaaa tttatatgga tattataatt cttgtacaat      6120
     ctgaagataa taatagatat ggtcttgtca tacaagatga tctaactaga tttttaactg      6180
     ttgctccgat gccagatcaa gaaagtgaaa cggtagcaag aacatttgta gattatttta      6240
     tttgtagata cggttgccct ttggaggtgg taaccgatca gggtgcaaat tttatgagtt      6300
     gcctcatgaa gaatgtttgc aagcttttga aaattaaaaa gatctgcact agtgcatatc      6360
     accctcaagc taacttggtt gaaagatcaa accgagaatt gaaaatatat cttcgacaat      6420
     ttattttagg taatcctgag tcgtgggact cattgttacc attttttacg tttgaatata      6480
     gtcttttatg agcagcctca tgaagaatgt ttgcaagctc ttaaagatta ataagatctc      6540
     cgctagtgca tatcaccctc aagctaactt ggttgaaaga tcaaaccgag aattgaaaat      6600
     atatcttcga caatttattt taggtaatcc tgagtcgtgg gactcattgt taccattttt      6660
     tacgtttgaa tataattcaa cgataaattc atcaaccggt tactcaccgt ttgaattatt      6720
     gtatggaaga gcagctagaa tccctacatc tatttttgca tacaaaaatg atagcttaac      6780
     atacgacgat tatatcgccg aacttagagc aactcttaaa ggcattcatg aaaaagccaa      6840
     acaaaatttg ataatttcta aaaataaaag aaaaattatt tacgaccggc attccaacga      6900
     atggcaaccc atgtggggag atttagttct tgtgcaatct attccttcag gagtagggaa      6960
     gaaactccaa agtctttgga gaggacctta cgaagttgtt gatattccaa gtgaacaaac      7020
     aacaatcatc aaaaatggaa caaaattaga gaagattcac agcaatagat tgaagaaatt      7080
     ttatgactag taacttcaat ttgtgaaatt taaacaaaaa aaaataataa taagaaaatc      7140
     gaaaagaagc aaggtttatt aaagatccaa gcatctaatc tttatacgaa tatttggtat      7200
     ttcttgtgtt catttttcgg ttgatttaaa acaccgttaa tatttttttt caaatccata      7260
     gggctggaat gcgaatcata gggaaagcat tgatattttt agatggataa cggatggaaa      7320
     tataattctt gacctacaaa tagatatttt tctggctaaa ttggattaaa agctttgaag      7380
     atttatacgc gcctcctcac aaacgaaaaa gaaaggctag aacgaagcca tcggatgtag      7440
     aggggactat ttcagtttaa agtattctga atagttttgt gctaacattt tccttaagca      7500
     attccaattg agcttcaaaa attcaaacag actcaagaat gtgtttttgt ctcaaggaaa      7560
     gaaaaacaaa agcaattgaa agttggaaat gtttcgcatt cttgtactgt ttttggaaaa      7620
     catgaataaa tggtcattaa aagagataaa aaaaatataa ataaataatt caatctaaaa      7680
     atgaaccaag atcaatgaag tatacacaaa aaaaaaattg taaacgaatt taagcgccat      7740
     gtaacgctca aaataaatac tttcaaagaa ttgtggatgg aaaaaggata ttgatcaaat      7800
     atttataatt caataaaaaa gaaattttgc ttaatcaata aaattataaa acaataaaaa      7860
     gttttccaag tatgacaata atatctgata tctattttga atttcagaaa aaaatagcgg      7920
     atccggatct caattttaag aaaacatata gacaaaaatt attatcaaat ctaagtatat      7980
     ataatatgaa aagccaagaa aaccattctt caacaaacaa tgttggtcgc attacaaagt      8040
     tgctgatcaa ataattgaaa aaaatatata ttattaaaca caatcgcgat gatgcaggaa      8100
     ataattttgg atgaaaattc ttatgagaat atgaaacgcg aagcattata ctgcataaac      8160
     aaaatattag aagatatcaa cattcttcta tcaaatcaac attatattct tctcatagca      8220
     cgatagtttc aaattacacg gttttaatat ttaaaatgta tatagaactg gccagttcac      8280
     acataaacta tccttaataa ataatcgtta agatttaaag tttagccagt tcacacataa      8340
     actattctta ataaataatc gttaagattt aaagtttagc cagttcacac ataaactatt      8400
     cttaataaat aatcgttaag aattaaattt tagccagttc acaaattaat tattgtaaaa      8460
     aaaaaattat cgtaaatttt aaattttatc aactaattga aaatattaaa tatgtttcat      8520
     aaacataaaa taattcaacg atttgtaaaa gaaaaatgtc tcaattcaaa ggagacattg      8580
     cattttggaa caaatatcat ttaagcgaaa aataaaaaaa aatgaagtgt aggaaactag      8640
     aacgatttaa ttagaattag accaacttta cggaaatcaa tggatcagaa aataaaaacc      8700
     caaaggttga gaacaataat aattaccaaa cggcctaact aacgcaaaaa aaagacataa      8760
     aactaacaag aataataaaa atgcgagcca aataacaaaa ggtctaaaca agtatgtacg      8820
     aatcgaatga ctgcgattgc atgattgacg ctgtatggac aaggaggtgc accccagcat      8880
     gtttcaaaag agtgtggttt tgattcaatt atcaagtggt ggtatagaac acatttttgt      8940
     cacatttatt aataactatt tttcttttcc aacagattca gtcccacctt cgaaaggaaa      9000
     ggggaagata agattttgta taaacaaaat ccggatacat tctacagtta atagcatttt      9060
     tttggtgata gacaggactt tgactacgac aaaatatggc tactaaaaaa aagaggttgc      9120
     gcattttcaa taacctaagt ttttgcagaa tgtgcgcaac cacaatacgg gacaaatttt      9180
     ctcgatttaa aaaacgattt caatctacaa gtaattacgt tcaacttaat aaatataaat      9240
     attaaatgtg atggatttcc ctctcgaatt tgtcgcgatt gaattaaaaa gtttttaaat      9300
     atataaatga tgcattgaac agccaatata tggactaatc gtaaattgaa atcggttttt      9360
     aacggaacat acttatatgt ttcagtttga catttaaatt tacactgaca catcatcaga      9420
     agattcgcat gctactaatg cttttcaggc ggacaaaaat agcgaccata ataaactaac      9480
     aatcaataac cagaacttac taacggatgc aattagagaa tctgacgagg aatcacaaga      9540
     cacagcggtt actattttat cgaacgaatc tagcgacaac tcctcagaag aaggcgaaaa      9600
     ggatgagatg aaatctacga agatgaagac gatgaggcga gagaaatcaa caaaaatgaa      9660
     ataaaactat caggacaaac ataaaatatt aacaaacaga attttaacaa acattaaaat      9720
     aataacatat taattttgca tgaaaaaaaa acttttgaac taataagatg attaacatac      9780
     taaacataaa ataacattgc cttcaaacaa tataaaattg ttttatatgt attataaaat      9840
     aattttctat tttgcgttat atatcaaatt ttaactgttg atcacaatgt gttgaaaaaa      9900
     aaaacaaaaa aaaatatatc aaggaaaatt ttaaacaatt atatacaaag aatcacaaac      9960
     ggaaatttat ttgtgctcga cgaagttcat tcaaaatatt atattattaa acctttctga     10020
     aatgatacat tcaaagaaac tagatcaaac caaatattgt aattctcaaa taaatcaaac     10080
     aatgaaaaca aaaacattat aaaattgtaa ttgaattaca gataatcgat tcgaatatat     10140
     gttcaaccat tattataact tacatgtgcc aagttacacg caaaatgaac attcgaaaaa     10200
     aaaaatgtaa tcagattata aaaaaaagta aagagacaac ttttatctcg taatgtaaat     10260
     tatgttcatt taaaatatat attaaacaat aactacttat attcagtttt tctaaggata     10320
     tttacatttt tttaatgcca cagttcagtt gaaaattatt ccatgctagt aattgtcagt     10380
     aaaaatctac taccaaaatt aagaggttat aagtacgagt ttgatcttat aacataaatc     10440
     taattataaa agcttaatac ttttgcagtg tcaatgcgaa tgcaaatatg tttctcattt     10500
     tcagcgaact aaaatatgca aaactctcag aacaaaatgc acaatttcct cataaccaaa     10560
     agtagccaat aaaatgatca taaaattatg aacatttaag aaataaaagg ccacgaacat     10620
     gagtagaaaa caagtctcgg atcaaggttt ctgatgacta agtgctaaga cctgagaagc     10680
     atacacaaaa aaaaaataac gctgaaagaa aaaaaagaat tcaaaaaaaa ttatataatc     10740
     aaaaatgata atcaacatat ttagaggcta agcattgcac aagttgaagc acaataagat     10800
     aaaccaaaga acttaattca aatcaaactc acatttataa tttccgtctg tcgcgaagaa     10860
     aataaaagac aaaaaaacat tccttgatca ttattacaac tgaactggta tgcataataa     10920
     aaaaataaat aaaaatagta aataagtgaa ctatgcaaac aaaccaaaga agatacacca     10980
     aaatgaagga tgagaggcca acagcgcgaa accaactatg gtcatcatct ccacacctgc     11040
     caaagagttt gcaagtcaat cccagaagac gagtactcac tgcggaggta tacggacatc     11100
     agacgaagca gcctacgagc ggtacacaaa aattaccaat atcaaaacac caaggataga     11160
     aaaaaaaaaa gtttagcttt ttgataaatc tctctccact tcttaattgt agaacagaag     11220
     aatcaatcta ttgtaacaca agttgttaac agaaaaataa gatcataaag gaacaaaaca     11280
     ttgcatccta agaaacatta tatcgaacca tccttgaaac caacaatcaa ctgacagtag     11340
     atgatcacct attctagatg aacatctagc tgggaagtgt gggggta                   11387
//
ID   Gypsy-62_CQ-LTR repbase;    DNA;    INV; 856 BP.
XX
AC   AAWU01038191;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_CQ_;
KW   Gypsy-62_CQ-I; Gypsy-62_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-856
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 504-504 (2011).
XX
DR   Genome; AAWU01038191; Positions    8126    8981.
XX
SQ   Sequence 856 BP; 249 A; 168 C; 204 G; 235 T; 0 other;
     tgtagcgacc cacatctttt tttcacctta gatgaaatcc ccgacgcaat aatgtgcgat        60
     tggactttga tccatgatga ggagatatca tccagtggtg aaattaaaga gaaccgtgaa       120
     gtcgctcaaa tcataattag tctacagcca aattaccccc aggggaactt ggcccagtta       180
     gcataacttc acagttctct tttcaagatc aaacgaaggg ccggctgagg cgatgtcgtt       240
     tgtgcgttcg ggttttcaca cgcgtcaaaa acagatggcc catgcgtgag ccgataggcg       300
     atcgaatcta attcacttgc ttatgccaga gggagagaga gagatagaga aagggagaag       360
     aaggacaata tgcgacactt cgggttttga ctcgttgacc aatcaattag gacatggagg       420
     ggataattac ctcacccgct aattgattgg tcagaaggtc tcggcaagaa atccgaaccc       480
     aaaaaagatt ccaggaatta tggggatctt caaagtcctc aaatgaacga agaggtcact       540
     ataaaaggcg atcgaaaatc tcgatcgggg ctcagtttgt tcagtcagcg cagttcagta       600
     ttcagtatgt agttcagttc ggagttcagt tcggtgttag tcacagtatg tagttcaaat       660
     tttgccctca gttaattctc ggtaatccca gtgttctcag ttcagtagtt tagtgtcagt       720
     tttggtgttt gactttttgt aactcgttaa actttctcaa taaaaagtta ggaaaagtga       780
     tcgtgcccgc gtttttcact ctaaatcaaa aagaaattcc agtgtttgaa atatatgggg       840
     tggacggcgc gataca                                                       856
//
ID   Gypsy-62_DEl-I repbase;    DNA;    INV; 5514 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_DEl-I;
KW   Gypsy-62_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5514
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7028-7028 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 5514 BP; 1686 A; 1111 C; 1219 G; 1497 T; 1 other;
     ggaataataa taaataatat ctgaataatt tggcgcccaa cgtggggcct tactgtacag        60
     taaacccact aaatagcata caaatactat acattttcct ttcagttata tttccataat       120
     tttcctagtc agccgtgtca actttctatc gcattggaat gcagtgctta tattttcaga       180
     aatagtaaaa acacaccacg aagaaagttt tgatgcagct gtctccttta tttgtgttaa       240
     accacaatgg tcaagtgctt tggattttgg tcaattacaa ttatctaatt attttggcta       300
     accacacttg acgcagcgat gcataggtaa ttaagctaaa gtctagtaat tcggcactgc       360
     aggataacag agctaatgct aagaagcaaa agcctggccg caggttatga aattagggct       420
     ttgagcaatt gttaccaggg aattttattt caggcagagt gtgaagtgct tggaactaca       480
     atcctaaaaa gaactattag tagtttaggt tggccacgct tcatataaag gtcaagtgat       540
     caaaacagcc agtatctctt gttgtgcatt cattctcagc tttacctttt tctccatttt       600
     tcttaagaac ttctcacatc atttttaatt agagcttcgt cgatgagctc ttggttatgc       660
     atggagttaa ttgtttatcc gtcataaatt ttcctaatag cataagctag ttgcttatga       720
     tcttatattt tcgatttttc cgaatttttc tttagctagt tacgtttcat tttaatattt       780
     gatttacaaa accagccaac tgttgtctca gcgggaaatt aataaactat gggagtagac       840
     cattcagata gcgaagaagc cggaagatcg tctgattttt gtgtcttatg caattcgcgc       900
     attcttgaaa aagatttata caagacaaaa tgcgggcacg ggtttcatag aaagaaaacc       960
     tgcccaacct gtaaagctgc tggttctgga gaacttacta caagatcaga tagttttatc      1020
     gcacaaaaaa caagaagtca aaaactttta agttcacaag cagagggcga aagtcaggga      1080
     tcagaagtta tggagaaaga aaatcagagt cgagagcgtg ggggcgagga cctacaaagt      1140
     atggtgttag atgcagtaaa atctatgcaa cacgagttgc ttacgcaatt atcagaaaaa      1200
     atgtcaaaca tgatacaatc caatctagcg gccagaatcc cccaaccgac acttcatagc      1260
     gctaccgatt tagggtcctc acttgatcag cttcttggca tagatgcaag gcaatcgaat      1320
     gcaggacaaa atctttctca ggctaacatt tcacctagat caacagccac agaacttttt      1380
     cacaggccag ataaggtggc acatataatg aatggatgga aactccgttt tagcggagac      1440
     ccaggcggca taagcgtaga taattttata tacagggtac aagctctaac cggtcaaaca      1500
     cttgattcaa aattcgatgt aatgtgtagc aacgcaagtg cattgtttga gggtaaggca      1560
     agtgactttt actggcggta tcataaatca gtgcaatccg taaagtggag cgaactgtgt      1620
     ggcgcacttc gtcgtcaatt cagggacact aggacagatg tagatattcg agaattgatt      1680
     agagatcgaa aacaaaaaga aaaagagaat ttcgattcgt tttatgatgc tatagttcag      1740
     ttgactgata gcctagattg ccctttgaat gaaaaagcct tgatagagat tctaaggcgc      1800
     aatctgagag cagaaataag acacgaaatc ttaaatattc ctacggaaac aatctcaaaa      1860
     cttcgcgaaa tatgtagaag acgagaatgt ttccttgatg aagtaaagcg gaatcaagta      1920
     tataaaaagg attctctgtt taaaagccat gtctcagaac tgctagagga ccagcataaa      1980
     gtttgtgaat cagagttatt cgaagacgat gatggtgcag ttgaagcaat atctttaatt      2040
     tgctggaact gtagaaagga aggtcacagg taccaagact gcactgctcc tcgaaaagtg      2100
     ttttgctatg gatgtggcgc acgcaacacg tacaagccat cgtgccaaag atgccaaaaa      2160
     aaccttcagc agaacaccca agtcactcgt tctcggtgtg ttcagaagac acagtcaaca      2220
     aacaccgaaa acgagcactt ataagtccca ttaggaactg tcctgaaaag gactctctta      2280
     ctcctgatga tgttccttta ggtggatggc atcagagagt tagtaatttt aaaattagta      2340
     gcaacaaatc ttcttttctt aataactcta gaattaaaaa taaatcacga aatacaaata      2400
     gacttaaaag gttctggaaa gttactaaag acttaagtgc gcttcgcaat acttgtgtcg      2460
     accagcgtcc atacaccgtg gtcaaaatcc ttgatcgcaa aattaaaggg cttatggata      2520
     ccggagccgc tatgagttgt atcggcggtc agttcgcaca ggaaattctt ggtagtaaag      2580
     tccccattcg cagagtgttt aataatattt gtactgcaga tggaagcaag cagaatattg      2640
     taggtcgatt aagcacagat atagaatata atggtcagat aaaggctatt gatatgcaca      2700
     tagttccttc tctgaagcag aacctttatc tcggcgttga cttttggcaa cttttcgatt      2760
     tgttacctcc cgatattcag atttcggagc taagcgctca taatctgtct gaggaacaga      2820
     agaaaaccct ccagaaagta gttgatcagt tcccatcatt cgcatccgct ggtttgggta      2880
     aaacaagtct cctttcacac cacattgatg tgggtgacgc taagcccata aagcagcgcc      2940
     attttcccgt atcaccagcc gtggaaaagc tgttgtatgg agaagtagat cgaatgctgc      3000
     agctcggcgt agtagaagag tctgatagcg cttggtcctc gccagtggtc ctggtgcaaa      3060
     aacctggaaa ggttaggctt tgcctagata gcaggaaagt gaatgcagtt actgtcaagg      3120
     atgcgcatcc actgccacag attgacggca tcctaagtcg tctaccaaaa gccgttttta      3180
     taagcagtct ggaccttaag gatgcatttt ggcaaatccc gttggatcca gcatctaggg      3240
     ataagactgc gtttacgatc ccaggtcggc cgctttacca atttaaggta atgccgtttg      3300
     gcctttgcaa cgctggccaa acaatgtcgc gtttaatgga caaagttatc cctgcttcac      3360
     tgcgcaatga ggttttcatc tatcttgatg atctcttgct agtgtcagag agctttgaag      3420
     accatataaa agtcctgaaa acagtctctg atcgcatccg atctgccggt ttgacaatca      3480
     atgttcaaaa aagtcatttt tgcgttcagc aggtcaggta tttagggcat gtcatcgggg      3540
     aaggcgagat acgcacagat ccggaaaaag tgtcagcgat tgagaagttt ccgttgccca      3600
     aaaccctgaa aagtttgaga agcttcctag gtatggcggg ctggtaccgc aaatttatas      3660
     acaattttgc tacggtagct gcacccttga cagacttact taaggcaaaa agaaaattca      3720
     cgatgacaga ggaaggacat caggcattta taaagttgaa acgaatgctt tgttccgcac      3780
     ccgtccttag aagcccagat ttttcaaagc ccttcttatt cattgcgatg ctagcaaaag      3840
     tggcgtagga ggtgttttag tccagaaaac ggaacagggt gacgaatacc cgatcgcttt      3900
     tgtctctaaa aagcttaaca aggcccaaaa aagctactca gtaagtgaac aagagtgcct      3960
     ggctgcaatt gtaagcgtta agcgatttcg tccctacgta gaaggtcagg acttcacgat      4020
     aattacagac catgcatcgc tgaagtggtt aatgggtcag acggatctca attgccgttt      4080
     ggcaagatgg gctctcaaat tgcaagcgtt taaatttacg atcgaacatc gccggggatc      4140
     acttaatgta gttccagatg ccctctctag agtcaacgag gacgaaatag cgagcattga      4200
     tgcttcacag ggcttgctgg tggatgtaac gtccaaacat tttcaaagcc cagaatattt      4260
     aagcctggta gatagtgtta gggccaacaa ttcgaaattt cctgacttaa aagtgttaga      4320
     taacttggtt tatcgacgat cagagcatgc gacaggtgag cctcttcacg atgtttatat      4380
     ctggaaacta tgggtaccaa tacagctggt ggccgatgtg ttggaaaatg cacacaatca      4440
     cccacttgct gctcatggag gcgtgcataa aactctagaa cgtatacgcc gctactatta      4500
     ctggcctggt ttggtaggtg acgtaaagtc atacataagc aaatgtgaga cctgcaagtc      4560
     cacaaaagcc cccaactgtc cgttaaggcc tcccatggga aaagcaccag aatctcaacg      4620
     attcttccag cgtgtttata tagactttct aggtccatac cctcggtcgc gtagtggaaa      4680
     cgtcgcaatt tttatagttc tggatcactt ctcgaagttt gtcttcttga aagccgttaa      4740
     aaagctggaa gcggccatcg ttgtgaagta tatgagagag gagttgtttc atttgtgcgg      4800
     cgtgccggaa acaatagttt cagataacgg ctcacagttt agggctgaat tgtttcaaaa      4860
     gttgttaagg gaacacagga ttactcataa gctcacagca atccattcgc cccaagcaaa      4920
     tgcatcagag cgagtgaatc gctcaataat tactgctatt cgatcgtatg tagatgctag      4980
     ccaaaaagat tgggatgcaa atctaagcag catttcctgc gcccttaggt ctgccaccca      5040
     ttcagccatc gggacatctc cttattatat ggtatttggc caacacatgg tgacatcagg      5100
     aggcacttac tccttattga gatcgctgca atctttacaa gatagagggg tgacattcac      5160
     tagaacagac tcgttagaat tagctcatag caaggcaata aagttatcag aaaagcaaga      5220
     caacaataat agagagcgct acaatcttag atcgcgtgag gtttcctact ccaatggtca      5280
     agaagtgttt cggaggaatt ttaagcaaag ctgttttcaa acaggataca atgccaaatt      5340
     aggccctgca tttgtgaagg cacgtgtgcg tcagaagcta ggaaattcat actacgacat      5400
     tgaggacctt caaggtaaac tcgttggacg ctaccatgca aaagatctgc gccaatagtc      5460
     ttggcgggat cagccttgtt gggtttacca ccaagtctga ttttagcggg gggg            5514
//
ID   Gypsy-62_DEl-LTR repbase;    DNA;    INV; 2240 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_DEl-I;
KW   Gypsy-62_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2240
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7058-7058 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 2240 BP; 767 A; 415 C; 434 G; 624 T; 0 other;
     tgtagtggag tatagaacca catatcgtat gtttagttgc gccacctagc gggcggtatc        60
     ggctgtaaag ggcaacctta agaggggaag attaatcgtc aataggtagg actgcattag       120
     cgttaacgtt tttagcgata gcccagctct aatcccggtt gtaacccatc ttgtaatatc       180
     cgccctcgaa aacctcatga tttcttctta atctgagtct cgacctgagc ggttgtatag       240
     ctggcaaaag aacagcgata atacaactta aagtaaagag gttgtggccg atcaagactt       300
     tcgcagctca ccactgcaca aatttttgcg cggcatacgg tattacagtg gcagtgaacc       360
     aattcttggc cagattctgg ccaaaacggt tagttaccac accctcacgg gtaagtcata       420
     acctataacc ggtgcaagtg aacatgccct cattcaggcg ttttatttgt cataggggac       480
     ggcgttctta catgcccttt cgtcgccgag tacctccggc gatcatatcg tcagtcattt       540
     ctgccccaaa aaggaagttc agttcgtcca cgtcttcggc taagccccgg agcagcgagg       600
     agaaggaaac gccatcagga actcaacata accagcgcca gcagcatgcc gcaataagtt       660
     ttcagtgcat ttttttttgg tatcatacgt ctgtcgactt aattaaattg cataccaaca       720
     agtgtttata aacccgtctg tgctctcata atctgcagct atggcctaca gtaattaaat       780
     cccagtattt cccatagtga agtgtctaaa actaagtcag aatagtgccc aaaggtagac       840
     gcaaagcaaa atgcgtatat aaatgtaaac gcaaactaaa tgcaaatata aaagtaagca       900
     aagaaatgca tgtatacaag tgatcgcaaa gctgagtaca tataaaagta aacgcaaacc       960
     ttaatgtaaa cacaaaagta aaagcaaacc cagattttta cacagataaa atgaagtaaa      1020
     tttgaagttg ccaaataaaa acatataacc ggttgaagac ataaaaatcg tataagataa      1080
     ggctaagttc tactaattaa aatcaataaa aaaatataaa taagttaaaa tgttaaaaga      1140
     aatgtgaata gaaaaagagc agtaggtgtg cataagaaga gaacaagaag ttcgaaagct      1200
     tttatcgtta gttataaata gattaaaaaa gatgcgaata taggtggaga gtaggaacat      1260
     gtaaaattct agagatgtgt atgtaagttt cggaccagtt aaagatgtgc agacgtatga      1320
     gccgataagg ttgtaattgc cgaatttctt tggcttgcat attgtttact aattttcagc      1380
     aacaccacca acatatggaa gcgctttcat cagtgggatt tctcaggtga gccaagtttg      1440
     acaatttaat acccttcggc aaatttaacg gtcttgagag ttatccgaaa ttttattacg      1500
     caattaattg atcaagtaaa aatttatcgc tatacaaaaa aaaacccttg aaatataaaa      1560
     gcaaccaaat actaaataaa ttgtctgaat gataacgata atatttctta ttaaacaaac      1620
     aaaaagaaaa cagtgaagta gaaaagtaaa tctgttattt tcgatttaaa tatatgttaa      1680
     tacccttttg ttactgaaat gaaaataaaa aaaaatgaaa atttaaagtt ttattaagaa      1740
     tcatgcatgc tagttttaaa caatacctgt atacacaaaa atatcttaat ttaaatgaag      1800
     ttaatatctt tccctcttat atttagtgaa taaacactta ttataatgtc tgagtaaaca      1860
     atcatctttt taactccatg ctaacccgag agccgtcgta gaatcagtta ttataagggg      1920
     cctgatgcag tatggtattg gaagagcatt ggccatggta gggtgggctg ataacacccc      1980
     catttacatc taggggcgtg tagtgtgaga agtgctatct ctgtctgtct gtctgtttga      2040
     tatgctatct cttttccggc cgatattggc tcgttgcctg tttgcacgca atacatatta      2100
     attgttaaag atatttaaga gcacccgtaa gctgcagcct cccaagaaca ccacgacatt      2160
     cgctgacgag ctagagccgg atttaaacgc gtgcagggct aacagtttgc aataccatca      2220
     gctcaacgtt gttcgttaca                                                  2240
//
ID   Gypsy-62_DWil-I repbase;    DNA;    INV; 7169 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7169
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1893-1893 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1908..3251
FT                 /product="Gypsy-62_DWil-I_1p"
FT                 /translation="MEWEELLLHIQNIKENFKKSYKCVTQNRNIQKETINK
FT                 HAKILVDSFNEARNLVHVNRESIGKANWSKISNLLIKLRTNLISIKTKYNL
FT                 DIFVPTVLNSPLSIDTCKKETEQEGEESETSEEEIEEKDLNDLTIPALLTL
FT                 PDIEALSEQDNESDLDINTSVINTTDRMAELNARRAYMKDINIAIPEFNGT
FT                 KMQLKRFVTALRLVDMMKGDYENIAVEVIKSKIIGPTLYEVEEETSIEAII
FT                 QKLQGFVIGETSKVIKARLKNTTQKGKTADEFTSQIDNLRKTLQSAYIEEG
FT                 MPAALALKNSTDDAIEAMIGNCEHNRIKNILDSGNFKTMDEAIAKYLQKST
FT                 EISGNPNTVLFAQRNRGNYNNKYNYRGRGNGRGYYNNYNKNNNGQNFQQNG
FT                 NNSYRGNNRGYSRNNNRGNRGNNRQNRGYNSNNSNVRVAQNNSGNSQQPLD
FT                 TQQ"
FT   CDS           3215..6886
FT                 /product="Gypsy-62_DWil-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, zinc-finger and integrase."
FT                 /translation="FGKLPTTFRYSTIKNYKVYTISLSQSTFASFTNVATG
FT                 KELVFLIDTGADISILKENSDNFQYIQTNQIINIQGISQEITKSKGLTSIE
FT                 IQTSKYIIPHDFHIVNLQFAIPCDGILGIDFIRKYNCQLDFKPTEDWLIIR
FT                 PNNLQYPIYVPIAYSSGNNSIVLPARSQVVRKIEITSAEDSILIPNQEIQQ
FT                 GIYIANTIASSQNAFIKLLNTTNTNQIVNINNLHYESLSNYEVVKTSSEDR
FT                 EKTVLATLSKNFPXQFNSQLTKLCTQYSDVFGLETEXITTNNFYKQKLRLK
FT                 DDEPIYIKNYRNPHSQKDEIQKQVQKLIDDKIVEPSVSAYNSPLLLVPKKS
FT                 LPNSEKKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCLDLM
FT                 SGFHQIELEKESRNVTSFSTNNGSYRFTRLPFGLKIAPNSFQRMMTIAFTG
FT                 LEPSQAFLYMDDLIVIGCSEKHMLNNLTDVFEKCRQHNLKLHPEKCSFFMH
FT                 EVTFLGHKCTDKGILPDDTKYDVIQNYPVPHDADSARRFIAFCNYYRRFIK
FT                 NFADYSRHITRLCKKDVKFEWTADCQNAFEHLKSALMNPTLLQYPDFSKEF
FT                 CIITDASKHACGAALTQNKEGLQLPVAYASRAFTKGESNKSTTEQELAAIH
FT                 WAITHFRPYIYGRHFTVKTDHRALTYLFSMINPSSKLTRMRLELEEYDFTV
FT                 EYLKGKDNYVADALSRITITDLQNIQIDNKILKVTTRNQNKQLNSCAGNEK
FT                 EKEDLQKQSLNASKPNVYDVIVNDEVRKVVTLRITDSLTTFKHGKKVIARI
FT                 DICDMYTNGILDLGQFFQRLEKEAGILNISQVKVAPSEKIFETISIESFKN
FT                 MGNKILQSLRVALLKPVTLLSNNDKEKEAILFTFHDDPIQGGHTGILRTMA
FT                 KIKRHYYWKNMTRDISQYIKKCNKCQKAKITKHTKTPLIITETPQQAFDRV
FT                 IVDTIGPLPTSEHGNEYAVTLICDLTKYLVIIPIKDKSAKTVAKAIFEDFI
FT                 LRYGPMKTFITDMGTEYRNSIIEDLCKNLQVKKITSTAHHHQTVGTVERSH
FT                 RTLNEFLRSYISVDKTDWDVWIRYFEYCFNTTPSMAHDYCPYELVFGKTSN
FT                 LPQQFNSVDKINPLYNIEDYAKESKFRLEQAYKRARIMLEQHKAKNKEIYD
FT                 RKVKNIELEIGDKVLLRNDTGHKLESKYLGPYIIEEIKDRDNILIRDTKNK
FT                 KQLVHKDRLKILTN"
XX
SQ   Sequence 7169 BP; 2955 A; 1226 C; 1189 G; 1724 T; 75 other;
     tggcgaccgt gacagtggtc accaamcwat aggagtgacc ggaaggagcg gaccagawca        60
     caaaaggaga attcakctac aatgsaggga tgaakgaagg aaaacaamat amtacaawca       120
     magtaagtag agtkatggga aaaaaatccg gtgtggtmaa gaagttaaaa gccagaaagg       180
     cksaaatwtt gaggctacta aacagcccam akataattgg aatacctcgg tgggwttaca       240
     cgccgaggta gagttcataa aaasccaatt gggmgaaagg gaaagtamaa ccacaaccgg       300
     aatcccatac tctacgatwc amaacgtggc gaagmcgaaa kcaaaaataa skccacaamc       360
     kgwgaaggaa ctaccgaaak tgaagawggt ctgcccaaac gactgcgagg gmccactata       420
     ctgcgagtat acmtgcagms actgctacgs gaccccaaaa tctggtgcga cgaccggcac       480
     cggwaccgcc tgagcccaka ggccccggac atcagcagct gagactacgm gcsckaaaag       540
     cgggccgmta gcgcwmcaaa gagmgcccaa caaaaccwaa tgaaactatg cgctgcgtcg       600
     cacawttttt ttkagtgcac tgcgatgcac atttttttta tagawttaaa acaawcwatg       660
     tacaattgtg cggcattaaa gcwgtccaat tagagtgtgg cctgaaaacc atacgaaaaa       720
     aataggcagg gatacatgta aaaaaaaaaa gaagagcctt cagcttaaaa aaaaaaaaaw       780
     ttttattaaa ttactactcw actaaactgc attaaaaaaa aaaaaawwwt waaaagccaa       840
     attccaaacc ttttctttaa atggaatgtt tgataacaaa ataagcaagt ttgatgatac       900
     atttgataca cccaatatgg ggttaataga cactaaaaca gtggactcca ctgcaaatgt       960
     aattaataaa atagagtcat cgaatgtaga cttaaaacca acaaatgcac ttttatwagt      1020
     aattgtaata ataatgagcg catatgtgtt atacaaggca tacaaactac acaataaatg      1080
     tgtaacaaaa agagccttaa gccatgctaa tgatcttgat aagatctaaa caacatatgc      1140
     aacaattgta ataaaaatgc atttmamaaa aaattatcaa aagaaaaaaa tatatatatc      1200
     aatttccaaa taaaaaaaaa aaacaaattt ttaagctgaa taaaatatat attggttgat      1260
     taaaattatt ttaggaagat agtgaatagg aatccmaaca ttgcagcgga tttagttgag      1320
     gtttttaata gggataatat taaatcggca caaagttcga taaacctagt acagataaga      1380
     ttagcatact tcgatttaac gggagaagaa ttcccagtka aaggaagtgc aatggtacag      1440
     atgagtttta ttgtcactgt accaaatata tgctgttttk ccaactcaac aggcacattt      1500
     cgcttctacc tgatggatga agctcaasaa taataggtkg ttgcgaaaat agagcaawaa      1560
     tcaagaaaaa tatmagagta gagcagacgg cctagataca gtatamaaat gggtckagta      1620
     gaacttaaat atttgaacaa atacgttcca ttcttagact tcctcttcaa cagaggcgaa      1680
     accaatccaa aatataagga aatcaaatac tggattgtga ataacagaaa attcaaatca      1740
     gggatagccc acttgataga aagatccata gtagaagcat ataatcgcct aaagcgaaaa      1800
     aatagaattc tacccacctg ggtacataaa ctgtwtgaag aacccataga gataatcgat      1860
     ctctcacgga attaaaaaaa aaagaacaca aaaataaact ttsaagcatg gaatgggaag      1920
     aattacttct ccatatccaa aatattaaag aaaatttcaa aaaatcatat aaatgcgtta      1980
     cacaaaatag aaacatccaa aaggaaacaa taaacaagca cgcaaaaatt ctagttgatt      2040
     cattcaacga agcaagaaat ttagtgcatg ttaatagaga gagcataggt aaagcaaatt      2100
     ggtcaaagat ttccaatcta ctgatcaagt tacgtacaaa cctaatctct ataaagacaa      2160
     aatacaatct tgatatattt gtacctaccg tccttaattc acccctgagc atagacacct      2220
     gtaaaaagga aacagagcaa gaaggtgaag aatctgaaac aagcgaggaa gaaatagaag      2280
     agaaagatct aaacgatcta acaattcctg cgctattaac attacctgat atagaagcgt      2340
     tgtctgaaca agacaacgaa tcagatttgg acatcaatac aagtgtaata aacacaactg      2400
     acaggatggc agaattaaat gcccgaaggg catatatgaa agatataaac atagccatac      2460
     ctgaatttaa cggcacgaaa atgcaactca aaagattcgt aacagctctg aggttggtag      2520
     atatgatgaa aggcgactac gaaaatatag cagttgaggt aataaaatca aaaattattg      2580
     gcccaacact atatgaagtc gaagaagaaa cttcaataga agcaataata caaaaattgc      2640
     aaggctttgt aattggtgaa acatctaaag ttataaaagc cagattgaag aatacaactc      2700
     agaaaggtaa aaccgctgac gaatttactt cgcagataga taacttacgc aaaacacttc      2760
     aatctgcata tatcgaagaa ggtatgcctg cagcacttgc tcttaagaat agcacagacg      2820
     atgctataga agcaatgatt ggaaattgcg aacacaacag aattaaaaat atacttgact      2880
     ctggtaactt caaaaccatg gacgaagcta tagcaaagta cctacaaaaa agtactgaga      2940
     tatcaggtaa tccaaatacg gttctatttg ctcaaagaaa ccgtggtaat tacaataaca      3000
     aatataatta tcgtggtaga ggcaatggtc gtggttatta caacaactat aacaaaaaca      3060
     ataacggcca aaatttccaa caaaacggaa acaatagtta cagaggaaac aacagaggtt      3120
     acagcagaaa taataacaga gggaatagag gaaataaccg acaaaacaga ggttataact      3180
     ctaataatag caatgttagg gtagcccaga ataattcggg aaactcccaa caacctttag      3240
     atactcaaca ataaaaaatt acaaggttta caccatcagt ctcagtcaaa gcacatttgc      3300
     aagtttcact aacgtagcaa caggaaaaga gttagtattt ttaatagaca caggtgctga      3360
     catatccata ttaaaagaaa attccgacaa cttccaatat attcaaacca atcaaataat      3420
     aaatatacag ggaataagtc aagaaataac aaaatcaaaa ggacttactt ccatagaaat      3480
     acaaacctct aaatacataa ttccacacga ttttcatatc gtaaatttac aattcgctat      3540
     tccttgtgat ggaatactag gtatcgattt cataagaaaa tataactgtc aattagattt      3600
     taaaccgact gaggattggc ttataattag accaaataat ttacaatatc ccatatatgt      3660
     accaatagca tacagttctg gcaacaactc catagttctg ccagcaagat cacaagttgt      3720
     ccgaaaaatt gaaataacct cagcggaaga cagtatatta attcctaacc aagaaattca      3780
     gcagggtatt tacatagcaa ataccatagc atcttctcaa aacgcattca taaaattgct      3840
     aaatacaaca aacacaaatc aaatagtcaa tataaataac ttgcattacg aatcactttc      3900
     gaactacgaa gtagttaaaa caagttcaga agatagagag aaaacggtat tagcgacact      3960
     ctcgaagaat ttcccacmac agttcaatag ccaactaacc aaattatgca cacagtatag      4020
     tgatgtgttc ggtttggaaa ccgaakctat aactaccaat aatttttata aacaaaaact      4080
     gagactgaaa gatgatgaac caatatatat aaagaactac agaaatcctc atagtcaaaa      4140
     agacgagata caaaaacaag tccaaaagtt aatagatgac aaaatagttg aaccatcggt      4200
     atcagcttat aacagcccac tgttacttgt accaaagaaa tcactgccta attccgaaaa      4260
     gaaaaaatgg cgattagtaa ttgactatcg tcagatcaat aaaaaattgt tgtccgataa      4320
     attcccactc ccaaggattg atgatattct agatcaactg ggaagggcga agtacttttc      4380
     gtgcctggat ttaatgtcag gttttcatca gatagaactc gaaaaagagt cacgaaatgt      4440
     tacatccttt tcaacaaaca atggttcata tcgcttcacg cgattaccat ttggtctaaa      4500
     gatagcgcca aattcattcc agagaatgat gactatagca ttcactggac ttgaaccttc      4560
     tcaagcattc ctttatatgg acgatttaat agtcattggt tgttctgaaa aacatatgct      4620
     caataactta acagatgtgt ttgagaaatg taggcaacac aacctaaaat tacatcccga      4680
     aaaatgttca ttttttatgc atgaagtcac ctttttgggg cataaatgca cagacaaagg      4740
     aatcttgcct gatgacacaa aatacgacgt catccaaaat tatccagtcc cccacgatgc      4800
     ggacagcgct agaagattta ttgcattttg caattattac agaagattca taaagaattt      4860
     tgccgactat tctcgtcaca taacaagatt atgtaaaaaa gatgtaaaat ttgaatggac      4920
     agctgactgt caaaatgctt ttgaacatct aaaatcggca ttaatgaacc caactctatt      4980
     gcaataccca gatttcagca aagaattttg cataatcact gatgcgagta agcacgcatg      5040
     tggagcagcc ctaacacaga acaaagaagg actccagcta ccagttgcat acgcatcaag      5100
     agcctttaca aaaggtgaga gcaacaagag tacaacagaa caagaattag cagctattca      5160
     ttgggcaata acacatttca gaccatacat ttatggtaga catttcaccg tcaaaactga      5220
     tcacagagca cttacttatc tattttcaat gataaatcca agttcgaaac taacgcgaat      5280
     gagacttgaa ttagaggaat atgatttcac agtagagtat ctaaagggta aagataatta      5340
     tgtagcagat gccctatcaa gaataacaat cacagactta caaaacatac aaatcgataa      5400
     taaaattctg aaagtcacta ccagaaacca aaataaacag ttaaattcct gcgcagggaa      5460
     cgaaaaagaa aaagaagatt tgcaaaaaca atctcttaat gcttctaagc ccaacgtata      5520
     tgacgtcatt gtaaatgacg aagtacgaaa agtagtgacc ttgcgaataa ctgattcttt      5580
     aaccacattc aaacatggca agaaagttat agcaagaatt gacatttgcg atatgtatac      5640
     caatggaatt ctcgacttag gtcaattttt tcaaaggctc gaaaaagaag ccggtatact      5700
     caacataagt caagtcaaag tggcaccgag cgaaaagatc tttgaaacta tctcaataga      5760
     atcttttaaa aatatgggca ataaaatttt acaatcatta agagtagcgc tactcaagcc      5820
     ggtgacccta ttatcaaata atgataaaga aaaagaagca atactgttta cgttccacga      5880
     tgacccaata caaggaggtc atactggaat attgagaact atggccaaaa taaaaaggca      5940
     ttattattgg aaaaatatga cacgagatat atctcaatat ataaaaaaat gtaataagtg      6000
     tcaaaaagca aagataacaa agcatacaaa aaccccgtta atcataactg aaacgccaca      6060
     acaggctttc gatagggtta ttgtggatac gatcggtcca ctcccaacat cagaacacgg      6120
     aaatgaatac gcagtaactt taatctgcga cctaacaaaa taccttgtaa taataccaat      6180
     taaagacaaa agtgcaaaaa cagtagcgaa agctatattt gaagatttca ttctgcggta      6240
     cggtccaatg aagacgttca ttacggacat gggaacagaa tatagaaact caataattga      6300
     agatttatgc aaaaacttgc aagtaaaaaa gataacttca actgcacatc atcaccagac      6360
     tgtaggcact gtggagcgaa gccaccgaac acttaatgaa tttttacgat catacatttc      6420
     agttgacaaa actgactggg atgtatggat aagatacttc gaatattgtt ttaatacaac      6480
     accctctatg gcacatgatt attgtccata tgagttggta ttcggtaaaa cttcaaattt      6540
     accacaacaa tttaatagtg ttgataagat aaatccacta tataacatag aagattatgc      6600
     taaggaatca aaatttagat tagaacaggc ttataaaaga gcaagaatta tgttagaaca      6660
     gcacaaagcg aagaataagg aaatatatga tagaaaggta aaaaatattg aattagaaat      6720
     aggagataag gttttattac gtaatgatac gggtcataag ctagaatcta agtatttagg      6780
     cccatacatc atagaagaaa taaaagatag ggataacatt ttaattagag atacaaagaa      6840
     taagaaacaa ttagtgcata aagataggtt aaaaatctta accaattaat atatataaaa      6900
     aaaaaaaata ataataacaa taaaacaaga gaaataaatt taaacaaata aattaccaac      6960
     atttaatgac actatacata tacaaatata attttaccac atgtatcatt aaacaaacac      7020
     tcgaacattc gaaagaaaaa aaaaattaaa aaaaaaaaaa aaagaaacaa taataagtaa      7080
     ataaatttct atatatatat aaaaaaaaaa aaaaaaaatt tttagaaaat aactccatat      7140
     aattacgtta tttttctaaa gagggggga                                        7169
//
ID   Gypsy-62_DWil-LTR repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-441
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1894-1894 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 441 BP; 145 A; 95 C; 74 G; 127 T; 0 other;
     tgtagcatgt tttggaataa catattaaca acaatacaaa catattgtag caattagtta        60
     caatatttat gtgcgcaaca ttcaagtgca tttgcctctt aagtaacatg accacccatg       120
     agtgcatggt gctggacaat tgctgtgtcg gcaaatataa cacgcgcggc cgcgttggcc       180
     caatatgcaa tatgatacat cctcactcta ccgctgcgac ggtatataaa catacatact       240
     tttatgtaaa cacttataca tttatacata agtatgttta tacataagca taccgctcct       300
     ctgcctgcat gactagcagc gcagctacgc ggtcttagct atagtcgaca attgttatag       360
     aattaagaat tattcaataa actgagctca aaccagaaag aacaattggt gtctctcaat       420
     acatcttcgg aacatactac a                                                 441
//
ID   Gypsy-62_LMi-I repbase;    DNA;    INV; 3080 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3080
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to the consensus. 3'-end is not covered.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(276..521,505..984,988..1698,1686..1973,
FT                 1977..2921)
FT                 /product="Gypsy-62_LMi-I_1p"
FT                 /translation="NLNAYYVIMSSQRGWNSTSAGKKPTKPTDSERQSSRA
FT                 SPESANSPPTSRRNHTQMIWYETISFKQPQMQPSVMTHLTRRSISLEDPSL
FT                 EXIIELAFKFEISSAADRSIGVVGGGRRHQRSGRCGPGDVAAIYGSSQCNA
FT                 TKTPNDPGTQGQRHRPFPTWLPTAADAPAALSQGSSSSAXLSHLYSSHDRD
FT                 DCPDRXSNCHRCGKDGHLAPFAAQHPAIPHAAXDTYPRHQSGRRLSCVQAF
FT                 YCFNQWEASQDANRHGSSCVLINYYLMQPVPASAQILLTYNKQEIALLGQF
FT                 TATVSYKSVSHTVLFSRKQLEIARSCASRVSTGPVSGSGGACNEYRTFFTR
FT                 LRMYKGLCLITSLMPILPCYCRKAVPWFAQPLKKNWTTCSKKGSGRSDSPG
FT                 ATPLVLVLKPGRRIRLCGDFKATLNPQLQVEDYLLPHPDDLSPSREHLFSK
FT                 LTWRHSANPVESHNPNHIHSFWPVPTHSPNVWTGCLDWLAXLLFFKGTSEQ
FT                 LLRDIPGCINYLDDIVVTGSSSTDHLANLQLLFQRLHQAGLKCNKEKCSFF
FT                 QTSISYLXSVIXRNXVYAHFPMWKPSPVPLFHHPVIVFFGKISYYRKFIPA
FT                 TAQVAAPLHRLCRKNIPFQWTPECDATFSTLKQQLQSASCLIPYDPSLPLI
FT                 LATDASDYGVGATYHKLSDGSERPIAFISKALSEAQLKYSQIEKEALANSL
FT                 CLFKFLPFLYGKSFHLITDHKPPLALFSARLPTKTSQRIQRWALFLSQFRY
FT                 TLHFRSTTQHANLDALSRLIRSCRSLILPTMIFQVDDEIQETLQAFPITAT
FT                 KVAXPHLQPLLSPTRMAYYSPTKAQAQLRFFCTIRHQLSVADGVILCIEPA
FT                 SASHVVSRKPPRPGSSSFTSRSLXDCAHKGLTCRHVL"
XX
SQ   Sequence 3080 BP; 743 A; 918 C; 642 G; 763 T; 14 other;
     gtgcgcgagc gaagatggtg gaccaacgca acacaattgt ctgttcagta aatactgaat        60
     ggcctctcaa cagtttgcac agttgcaaca gcagctgatt ctgaagtgag caacaaccac       120
     atcgccacgc cgcttccggc cttcgtgaag agtggaagac tggagacgtc gagaagagac       180
     cagggagaga ccagagagct cctggaatga ttcaactttt cctcttacgg accttcgtcc       240
     tcggtccaac tctttgtcgt tcatgagatc tgtgaaactt aaatgcctac tacgttatca       300
     tgtcctcgca gcgtgggtgg aattccacca gtgccggaaa aaaaccgacc aaacctacag       360
     acagtgagcg gcagagctcc agggcctcgc ccgaaagtgc aaattcacca cccacgtctc       420
     gaaggaatca tacgcagatg atatggtacg agaccatctc attcaagcag ccccagatgc       480
     agccttccgt catgacgcac ttaactagaa gatccatctc ttgaasaaat catcgaattg       540
     gccttcaagt tcgaaatatc ctctgcagca gaccgttcga ttggagtcgt gggcggaggt       600
     cgccgccatc aaagaagcgg ccgctgtgga ccaggggatg tcgctgccat mtacggatcg       660
     tcgcagtgca atgccacgaa aaccccgaac gacccaggca cccaaggaca gagacacagg       720
     ccattcccca catggctccc gacagcagcc gacgcccccg cagcgctgtc gcaagggtcc       780
     tcttcgtctg ccawcctgtc ccatctgtat tcctcacacg acagggatga ctgccccgat       840
     cgatkgtcta attgccatcg ttgcggaaag gatggtcatc tcgctccgtt cgcggctcag       900
     catcctgcca ttccccacgc cgcacmagac acttatccta gacatcaatc aggtagacgt       960
     ctcagctgcg tccaagcwtt ttattgatgt ttcaatcagt gggaagcctc tcaggatgca      1020
     aatagacatg ggagcagctg tgtcctcatc aattattatc ttatgcagcc cgtccctgca      1080
     tcggcccaaa tccttcttac atataacaaa caagaaattg cactgctcgg acaattcacc      1140
     gccacggtgt cctacaaatc agtcagccat acggtgcttt ttagtcgtaa acagctcgaa      1200
     attgcacgat catgtgcatc tcgtgtctcc acaggtcctg tttctggaag tggaggcgct      1260
     tgcaacgaat acaggacctt tttcaccagg cttcggatgt acaaaggact ttgtctcatc      1320
     acttcactta tgcccatcct accctgttac tgccgcaagg cagtgccgtg gtttgcgcag      1380
     ccacttaaga agaattggac cacttgcagc aagaagggct caggccggtc tgattcgccc      1440
     ggggccacac ctctcgtcct cgtcctgaag ccaggacgcc gcatcaggtt atgtggagat      1500
     tttaaagcca ccttaaatcc ccagcttcag gttgaagatt accttctgcc ccatccagat      1560
     gacctttccc ctagcaggga gcacctattt tcaaaactga cctggaggca ttctgcaaat      1620
     cccgttgaat cccacaatcc caaccatata cactcattct ggcctgttcc aactcactcg      1680
     cctaatgttt ggactggcta gcacasctgc tatttttcaa aggtacctcc gagcaactac      1740
     ttcgcgacat tccggggtgc atcaactacc tggacgacat tgtcgtcact ggatcctcct      1800
     ccacagacca cctggctaac ctgcaactct tattccaacg tctccatcag gcaggattga      1860
     aatgcaacaa agagaagtgc tccttcttcc aaacctctat ctcctacctt kggagtgtca      1920
     takcccggaa tkgcgtttat gcccattttc ctatgtggaa gccatctcct gtctaacctc      1980
     tatttcatca tccagttata gtcttttttg gcaagatctc gtattatcgt aaattcattc      2040
     ctgctactgc acaggtggct gctccattgc accgcctctg caggaaaaac attccctttc      2100
     agtggacgcc tgagtgcgat gccacattca gtaccctcaa acaacaactg cagtcagcat      2160
     cttgcctcat cccatacgac ccctccctac ctttaatatt agctacagat gcatccgatt      2220
     atggggtcgg ggccacatat cacaaacttt ccgatggatc tgagcgccct attgcattca      2280
     tctccaaagc cttatcagag gcgcaactaa aatattccca aatcgagaag gaggccctgg      2340
     caaatagtct ttgcctgttc aaatttcttc cttttttata tgggaaatcc tttcacttga      2400
     ttactgacca caagccaccc ctggcactgt tttctgcccg cctacccacc aagacatctc      2460
     aacgtataca gaggtgggcc ttgttcctct ctcagtttcg atacacgctc cactttcgtt      2520
     ccaccacaca gcatgccaat ttggatgccc tttcccgcct cattaggagc tgccgttctt      2580
     tgattcttcc aactatgatc tttcaagtcg acgacgagat ccaggagacc ctccaagctt      2640
     tccctattac tgccaccaag gtggcgcasc cacatctaca gccactccta agtccaacac      2700
     ggatggccta ctattccccc actaaggccc aggcgcaact ccggttcttc tgtaccatca      2760
     gacatcagct ctctgtcgcc gacggcgtma tcctctgcat agaaccagca tcagcctcac      2820
     atgttgtatc ccgaaagccc cccaggccag ggtcttcatc ttttacatca aggtcattgg      2880
     sggattgcgc acacaagggt cttacgtgca gacatgtgtt atgacatgaa tgttcaatgt      2940
     ttgatgtgca caacagctac ccagcctcag tccttccttg gccgtagacc tgggagccta      3000
     caccttgatt tcmaagggcc attttgggtc agtggttatt gcttactgat gttattatca      3060
     gttccctgtg ttccagcatc                                                  3080
//
ID   Gypsy-62_LMi-LTR repbase;    DNA;    INV; 501 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-501
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 501 BP; 146 A; 147 C; 115 G; 93 T; 0 other;
     tgtactgcca gccataaggg aaccccttgc aagctggcag cccaacaaac agccgcgtgc        60
     gccagaaagc ctaaacacta ctcgaaaggt gcaccaagtg gaaaacagac cttagaggaa       120
     aataaacgga aacttcccga cttaacttag aacctattct ttcagaggtc gcggacaaca       180
     gctcgggaac tccatatcac tacgccggcc caggattggc cggcaccgtc tatataacct       240
     cggccagacc tcacttcagg cagttcactt cgagccaccg cagtctacgc catggtccga       300
     agaatcgccg aagaagaagc gaccgctgac cggaagatac caagagcaga agcctgtcac       360
     ctctcagcca gtctggacct tggatgctgg ctcaccgccg acggaatctg ctccaagacc       420
     tccgtgcagc acagtcactg taattgtctg tagttagaag ttcttcaata aactgtagta       480
     tagaagaaac cactgagttc a                                                 501
//
ID   Gypsy-62_SpEx-I repbase;    DNA;    INV; 4065 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4065
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4128-4128 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..923
FT                 /product="Gypsy-62_SpEx-I_1p"
FT                 /translation="MSDSSESVKTAGSKPDANVTRRMHKRFGSTDRDDYGV
FT                 RKIKVPPFSPEDPELWFALLEGQFCTYDITDDVIKFNNVTNNLSVEYGKTV
FT                 KDIILNPPARNRYDKIKSELIKRLSASHERKIKQLLTNEELGDRRPSQFLR
FT                 HLQDLAGPSVPDDFLRSIWSNRLPHNIQTVLASQPTHSLEQLADLADRIQE
FT                 LTSPCNVAAASSSRPHTSQQSDEMAELKKMVQTLTLKLEEHTRAACCSTDR
FT                 SRPRDRRRSSSRQRSRSKSSYRRYPVCWYHSKFGPQAHKCLKPCDYAKAGN
FT                 SAGSH"
FT   CDS           890..4039
FT                 /product="Gypsy-62_SpEx-I_2p"
FT                 /translation="LRQGGKLRGQSLVATNDCPTYKGRLFITDRSTNVQFL
FT                 VDTGSDLCVYPRSALRERRAKTNFELTAANGSIIETYGFIELNLNLGLRRN
FT                 FVWRFVVANVTKPIIGVDFLSYYNLIVDVRNQRLLDNTTTLSSSASIANAN
FT                 VASVKVLTGDTRYHKILDKFPQITRPAGTPVSPKHNTVHHIRTTPGPPIAC
FT                 TPRRLAPDKLKIAKQEFELMLNNGTARPSESSWSSPLHLAPKKDNGWRPCG
FT                 DYRKLNSRTIPDRYPIRHIHDFSHSISGCTVFSTIDLMKAYNQIPVFEDDI
FT                 PKTAITTPFGLYEFPFMTFGLRNAGQTFQRFVDEMTRGLDFCFCYLDDFLV
FT                 FSRDEVEHEAHLHQLFSRMKDYNVLVNTSKCVFGASEVTFLGYQISASGTK
FT                 PLESKVQAIADFPIPKTVRQLRRFLGMLNFYRRFLPQSASIQAPLNALLAG
FT                 SVKASQPVDITGDALLAFNRCKESLANAALLAHPDCRADLALVTDASDLAI
FT                 GAVLQQRRDDDWEPLAFFSRRLSPSQQKYSPYDRELLAIYESIKYFRHMLE
FT                 ARHFVVYTDHKPLSYAFSERKANCSPRQFRHLDYISQFTTDIRHIAGKDNV
FT                 VADPLSRVDELQMPIDLDVLASSQASDLELAQLLREGSSLRLKRLSIPNSS
FT                 TELYCDVSTPTPRPFVPKHLRRQLFDSLHSLSHPGANATAKLVAERFVWPG
FT                 MRKDCREWTRQCLACQRAKVHRHVSAPPGTFDLPRARFAFIHVDIIGPLPI
FT                 SQGYRYCFTAVDRFTRWPEVTPMTDITAETVGKAIISWISRFGCPTDIVTD
FT                 RGRQFESALFQYLGKMIGFKHRRTTAYHPACNGLVERFHRQLKAAIMCHAD
FT                 ANWVDTLPLVLLGIRSSFKEDLQSSSAELVYGEPLRLPGEFFQATDSHTTD
FT                 LSDFTARLRRFAAKLQPTPAARHNKATIFIYKDLISSSHVFLRDDSLRGAL
FT                 QPPYTGPYEVLERGNKTFKIRVRGKSVTVSIDRLKPAYMLFHPSPDPSPNL
FT                 NPTPNPHPSSPLQPVPIGQNAPTRDEVKRTRSGRTVRFPVFYRP"
XX
SQ   Sequence 4065 BP; 1026 A; 1111 C; 930 G; 998 T; 0 other;
     ttggtgaccc ctaaggacac gaggtactta taatgagcga cagcagcgaa tctgtgaaaa        60
     ccgctggctc aaaaccggac gccaacgtga cgcggcgcat gcacaagagg tttggctcca       120
     ctgaccgcga cgactatggg gtgcggaaaa taaaagtgcc accattctca cctgaggatc       180
     cggagttgtg gttcgctctg ttggaaggtc agttctgcac atatgacata accgatgacg       240
     tcataaaatt taataacgtc acgaacaacc tcagtgtgga gtacggtaaa accgtgaagg       300
     atattatcct caatcctccg gcgcgtaacc gatacgacaa aattaaatca gaattgatta       360
     agcgcctatc cgcttcgcac gagcggaaga ttaaacagtt gcttaccaac gaggagctgg       420
     gtgacaggag gccatctcaa tttctacgtc acctccaaga cctcgccgga ccttccgtgc       480
     ccgacgactt cctccggtcg atctggagta atcgcctccc gcacaatatc cagactgtgc       540
     tagcgtcgca acccacgcat tcccttgagc aactggcgga cttggcggac cgtatccaag       600
     agctgacgtc accatgcaat gtcgccgccg cctcttccag taggccacac acatcacaac       660
     agtctgacga gatggcggag ctcaagaaga tggtgcagac cctgactctc aagctggagg       720
     agcacactcg ggcagcttgc tgctccaccg accgttccag accacgcgac cgtcgccgtt       780
     catcatcgcg acagaggagc cgatctaagt ccagctaccg aaggtaccct gtatgttggt       840
     atcacagcaa atttggaccg caggcacaca agtgtctcaa accctgtgac tacgccaagg       900
     cgggaaactc cgcgggcagt cattagtggc gacaaacgat tgcccaacat acaagggtcg       960
     cctcttcata accgaccgca gcacgaacgt ccagttcctg gtggacactg gtagtgacct      1020
     ttgcgtctac cctcgctctg cgcttcggga acgtcgagcc aagacgaact tcgagctcac      1080
     cgccgccaat ggttccatca tagaaacata cggctttatt gagcttaatt taaatctggg      1140
     ccttaggcgt aattttgttt ggcgattcgt tgtggctaat gttactaaac caataatagg      1200
     ggttgatttc cttagttatt ataatttaat agtagacgtt agaaatcaac gcctattaga      1260
     caacaccaca acgctgtcgt caagcgcttc tatcgctaat gctaatgtag cgtcagttaa      1320
     ggttttgaca ggcgacacgc gctatcataa aattttagat aagtttccac agatcacgcg      1380
     cccagcaggt acaccggtgt ctccaaagca caacacggta catcacatca ggacgacacc      1440
     cggcccacct atagcatgta ccccccgcag actggcaccg gacaaactta aaattgccaa      1500
     acaggagttt gagctcatgc tcaacaacgg cacggcgcgt ccttccgaaa gttcctggtc      1560
     ttctccccta caccttgcgc ctaagaaaga taacggctgg cggccttgtg gcgattatag      1620
     gaaactcaat tcgcggacta ttccagaccg ttatcctatt aggcacatcc atgacttctc      1680
     ccactctatt tccggttgta cagtcttctc cactattgat ttgatgaagg cgtacaatca      1740
     aatccccgtt tttgaggatg atatccctaa aaccgccatc actactccct ttggcctgta      1800
     tgaattcccc ttcatgactt ttggcttaag aaatgccggc caaacatttc aaaggtttgt      1860
     tgatgagatg acgagaggtc tcgatttttg tttttgctac ctcgacgatt tcctcgtgtt      1920
     ttccagagac gaagttgaac acgaggccca ccttcaccag ctcttcagcc gcatgaagga      1980
     ctacaacgtc ctcgtcaaca cctctaagtg cgttttcggt gcatctgagg taacattttt      2040
     aggttaccaa atctccgcat ccggcaccaa gcctttggaa tcgaaggtcc aggccattgc      2100
     agacttccca atacctaaga cagttaggca acttaggcga tttttaggca tgcttaattt      2160
     ttatagaaga tttttgcccc aatctgcatc tatccaagca cctttaaatg ccttactcgc      2220
     tggcagcgtc aaggcatcgc agccggtaga catcacaggt gacgcccttc tggctttcaa      2280
     caggtgcaaa gaaagccttg ctaacgctgc attactggca cacccagatt gtcgggctga      2340
     tctcgctctg gtaacagatg cgtctgattt ggcgataggt gcagttttgc agcaacgcag      2400
     ggatgatgat tgggagcctc tggcattctt ctcgcggagg ttgagtccct cgcaacagaa      2460
     gtactcaccg tacgaccgcg agcttctggc tatatacgaa agtatcaaat actttcgcca      2520
     tatgttggaa gccagacact ttgtggtata cactgaccat aaaccgctca gttatgcttt      2580
     tagcgaaagg aaagctaact gttcgcctag gcagttccgt cacctcgact acatctcaca      2640
     gttcacgact gacatcagac acattgcagg gaaagacaat gttgtcgctg atcctctgtc      2700
     gcgtgtcgat gaactgcaga tgccaatcga cttggacgtg ctggcttcat cccaagcctc      2760
     tgatttggag ttggctcaac ttctgcgaga aggatcatca cttcgtttga aaaggttgag      2820
     cattcctaac tctagcacag agctttattg tgacgtcagt acacctacgc caagaccctt      2880
     tgttccaaag cacttgagga gacaactatt tgacagtctt catagtctta gccacccagg      2940
     cgccaacgca acagctaaac tcgttgctga gcgatttgtt tggcctggaa tgcgcaaaga      3000
     ctgtcgagaa tggactcgtc agtgcttggc gtgtcaacgc gctaaggttc atcgccacgt      3060
     gtcagctcca ccgggcacgt tcgatcttcc tcgcgcacga tttgctttta tccacgtgga      3120
     cattattggt cctctgccta tctcgcaggg ctaccgctac tgcttcacag cggtggatcg      3180
     tttcacacgc tggccggaag ttacaccaat gacggacatc acggctgaga ctgttgggaa      3240
     ggcaataata tcgtggatat ccaggtttgg atgtcctacc gatattgtca ctgatcgcgg      3300
     ccgacagttt gaatcggcac ttttccaata cctcggaaaa atgataggat tcaaacatcg      3360
     cagaactacc gcgtatcacc cagcgtgtaa cggactagta gaaagattcc accgccagtt      3420
     gaaggcagcc ataatgtgcc acgcagatgc caattgggtt gacacattac ctttggtgtt      3480
     gttagggatc aggagttctt tcaaagaaga ccttcagtct tcttctgccg agttggtgta      3540
     tggcgaacca ttacgtttgc ctggagagtt tttccaggcg actgattcac ataccaccga      3600
     tttatcggac ttcactgctc gcctacgccg attcgcagcc aaactccaac ctaccccagc      3660
     tgcacgtcac aataaggcga caatatttat ttataaagac ctgatttcct ctagtcatgt      3720
     cttccttagg gacgactctt tacgtggcgc tttacagcca ccttacaccg gcccctatga      3780
     agtcttagag aggggtaaca aaaccttcaa aatacgggtc agggggaaga gtgttacggt      3840
     atccatagac cgcctcaaac cggcctatat gctgtttcat ccatcacccg atccctctcc      3900
     taatcttaat cctactccca acccacaccc tagttcccca cttcaacccg tccctatagg      3960
     gcagaacgcc ccaactcggg atgaggtgaa aagaacgcgc tcaggacgta ctgtcagatt      4020
     tccagttttt tatcgcccgt agcgacggtc tctggggggg agtga                      4065
//
ID   Gypsy-62_SpEx-LTR repbase;    DNA;    INV; 573 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-573
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4191-4191 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 573 BP; 154 A; 134 C; 85 G; 200 T; 0 other;
     tgtagcctac agtcacacat aaaacaataa ttatcacata attatgtgta taacttaata        60
     tttatatata cctatttgtt tatttctatt atatatttat ttacaatatg tacatgaaaa       120
     tcttattacc taactaaacc tacttattta ttacgaaagt attaccacga cacgagatgt       180
     aattgtaacg cggtgcattg gagacgcgtt atatcttcgg aaaaaaacca gtaaccggtc       240
     tcgtgtcggg cgctcgcgca ggcacccacc gttccactcc agtctaaaaa cgatctttcg       300
     ccgcgaagcc cgtgtcgctt gcttaccctg cgctcaccgc tatttatcgc gcgtaatttc       360
     atatgaactg tatttctgtc gcttttctta ttctacacct tctgcttaat aattaagttg       420
     tattgacttt tcctattgtg ctgtgtgaac tgtttctatt gtgtaatttg tgcaaatata       480
     attttcactg tgaattatct gcttggactt atttctcctc cgcttgcact gctacacatc       540
     ctgcttacac cgcacgccac tcaaccaact aca                                    573
//
ID   Gypsy-62_TrVa-I repbase;    DNA;    INV; 5728 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5728
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 307-307 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           648..1829
FT                 /product="Gypsy-62_TrVa-I_1p"
FT                 /note="gag."
FT                 /translation="MSEQVEEFSVFVTNCFKLSRERRIVGVDERLTKLHEL
FT                 YEQVPAEDRKLVQDAYKRCIVFLEKCKKESEEQLLVGAQNSSETVLQPINA
FT                 SNTGMEFDLKTVGAVVPDYNGSPEKLTDFLDCARLYNELLKPESRAGYLNF
FT                 LLKVKLKEKAKLALITTPKDFLEFETFLKARFKPKATVSSIQHKLSTLRQG
FT                 SRPVDSFVAEIESLVNSLTDLQVAERGENNREIIQALNDSTALNTLKAGCK
FT                 EEVKRVILASQVANFPDGVTLALDAESSLAITSEQPAQVNYVRRGYHGRGR
FT                 GHYRGRGKWRQNHNNHNSYNSYNNGNKYRNNGDSNGNANGSYAASYDGKRG
FT                 KNGNNGYRGRGQSRGQHRDHSGNGQAPPEARNNVKQVSVVAAEERNASIYV
FT                 "
FT   CDS           1664..5485
FT                 /product="Gypsy-62_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="WQTREKWQQRLPRQRPIQRSTQGSFGKRTGATRSKEQ
FT                 RQAGFGGGGRREKCFNLCLTGKSNFITLQTSLGGSLLKFLVDTGSDISLVK
FT                 ENCVTVKKGLNRTNVFNISGVGSGVHTTLGEIGTKIVVSDCTEIYHQLHVV
FT                 DSEFPVQTDGILGRDFLTMFRCKLDYESWILSFKVNGYDIEIPIQNQFGKC
FT                 KRGSEIIIPPRTEKVQAINLELEEDCVVHKRELVKGVFLASVVVPKNGFKH
FT                 VQIVNTTDEEIIIPSFDVSYEPLKDYLCVQHNTDLSLNDRKKRVRELCSAK
FT                 LSEHAEADRESVVQICESFSDIFHLPGDKLSVNNFYEQEIQLVDKKPLYRK
FT                 NYRLPEAQKPVIKKHIDKLLSDEIIEPSVSAYNSPVLLVPKKGETEDGEKK
FT                 TRLVIDFRGLNEKICSDKFPLPRIQEILDLLGRARYFSVLDAASGFHQISL
FT                 AKNSRHLTAFSTDAGHFQFTRLPFGIKIAPSSFSRMMAIALAGLDSRAFCY
FT                 IDDVIVFGSSLRHHNINLGKVFQRLRECNLKLNPDKCVFLKREVIYLGHKV
FT                 TSHGVYPDPSKFHVIKNYPTPKTVKDVQRFVAFANYYRKFISNFAEKAMPL
FT                 NQLLRKNVVFEWTDERKKAFETLKYCLMNPPVLQYPDFTKPFILTTDSSSF
FT                 AFGAVLSQGTVGSDKPVAYASRGMNKHELKKPVIEKELLAIHWAIQYFRPI
FT                 LYGRKFFVYTDHRPLVSLFSQKDPSSKMTRVRLDLEEYDFTVTYKPGKFNC
FT                 NADALSRIKIDTAYLRSLIPRDVDSLVLTRSMSKLKNAEISSGSESSKERN
FT                 FETKPDQLRIWNATSLSDVQGLKKCYFEIKSDNVANSKLSCKNEIVIHEEI
FT                 DGYRVVLRLSNNSTPDLGRVLETLDRRISTSNLALSRADKIFDYVSVNELV
FT                 KILNKAPVQQLKFVLYSPPECISDEEKQKEIISSFHSSELGHFGLKKTLAR
FT                 IKQRFFWKRMGKMVSDYVQRCKACQLNKVTKHNHEKLQVTTTPTTSFETVE
FT                 IDLIGPLPMTENGHRYAVTFQCNLTKFVDAVPIADKSAKTVATAIVENFFC
FT                 KYGMSPKIKTDLGTEFVNELLTEICKILNVNHKTSTAFHHETLGSLERNHR
FT                 VLNEFLRIHNEAKDSSWDKWIPFYCLSYNSTPLSTVNYTPFELIFGKLPQL
FT                 PNIDSTAVPPFLTLTEYGKDIQQRLSITHNKVAEMMNKIKQKQCDEANTEL
FT                 KSPLIFNTGDVVKLRIENRRKLDPFYSGPYVVINTNGVNTMIKNSDTGKIS
FT                 VVHNNRLLFFKPP"
XX
SQ   Sequence 5728 BP; 1827 A; 980 C; 1149 G; 1772 T; 0 other;
     tggcgaccgt gaatttcgga ccggtaattt tcggattgtg attatgattt ttattttttt        60
     ttttttttgc ctctctcttt tctcttcggt atgttcgcgc gtgttcatcg aaaattttga       120
     attttgaatt ttgatttaat gactttatat tattttattt tttattatca cttttatcta       180
     aattattttc gtctttttaa tcatgggtgg cgcggcaacc aaggcagaaa aggagacaaa       240
     agaaaccgta gtggtgtcgg ggcaggctaa cgtaaatatc ggtacccatg acatttacca       300
     atacacttta attgtgttca tatttttatt agtggttatc atcggaattg gagttctagt       360
     gcgtagaatt agtagatggt gccgcgataa tgagtctcgt catagagccg cacacgcttc       420
     catcctggag ttgcgtgaaa aggtgtgtgc gcaaagtgtt taataatttt tatttttttt       480
     attcttatta tggcatcagc ggacaatttt ttttttatgt tgtgtgcata gtaaccttat       540
     gtatttcgga tgttttgttt tcggtattgt ttttctcttt ttgccatatt tttattaatg       600
     tgttagttgg gttgttttat tttgctatct tctgaaattt ccctttgatg tcggaacaag       660
     tggaggagtt ttctgttttc gtgaccaact gttttaaatt gtcgagggaa cgtcgaatcg       720
     taggggttga cgagcgactt acgaagcttc atgaattata tgaacaggtt cccgcggagg       780
     accgtaagct ggtgcaagat gcatataaaa gatgtatcgt gtttttagag aaatgtaaaa       840
     aagaaagtga agagcaattg ttggtcggtg ctcaaaatag ttcggaaacg gttcttcaac       900
     cgattaacgc ttccaataca ggtatggagt tcgatttaaa aacagtcgga gcagtagttc       960
     ctgattacaa tggatctcct gagaagctta cggattttct cgattgtgct cgattgtata      1020
     acgagttgct gaagccagag agtagagctg ggtatttaaa ctttctgctg aaggtcaagt      1080
     tgaaagaaaa agcgaaattg gcgctaatta caactcccaa agacttcttg gagtttgaaa      1140
     cttttttgaa ggcgcgtttt aagcctaaag cgaccgtctc aagcattcag cataaactaa      1200
     gtactctaag gcaaggttct agacctgtgg actcgttcgt tgcagaaatt gagagtctcg      1260
     taaattctct caccgatctg caagttgctg aaagaggcga aaacaacagg gaaataatac      1320
     aagcactaaa cgacagcact gccttaaata ccctgaaggc aggctgcaaa gaagaagtga      1380
     aacgggtaat tctagcatct caagtggcga atttcccaga tggtgtcact ttggctcttg      1440
     atgcggaatc cagtctggcg attacaagtg aacagccagc gcaggtgaat tatgttcgac      1500
     gtggatatca tggacggggc cgtggtcact acagaggacg tggaaagtgg cgccagaatc      1560
     acaacaacca caacagttac aatagttaca ataacggcaa caagtatcgc aacaatggtg      1620
     acagtaatgg caatgcaaat ggatcttacg ctgcttctta tgatggcaaa cgagggaaaa      1680
     atggcaacaa cggctaccga ggcagaggcc aatccagagg tcaacacagg gatcattcgg      1740
     gaaacggaca ggcgccaccc gaagcaagga acaacgtcaa gcaggtttcg gtggtggcgg      1800
     ccgaagagag aaatgcttca atctatgtct aaccggtaaa tcaaatttca ttactttgca      1860
     gactagttta gggggcagtc tcttaaaatt tttagtagac accggttctg acattagtct      1920
     ggtgaaagaa aattgcgtca cagtcaaaaa aggtttaaat agaacgaatg tttttaacat      1980
     aagtggcgta ggttcaggtg tacatacaac tttaggagag ataggaacga aaatagtagt      2040
     aagtgactgt acagaaattt atcatcagct ccacgtagtc gactcggaat ttccggtaca      2100
     aacggacgga attttaggcc gagatttttt aacaatgttt agatgtaaat tagattatga      2160
     gagttggatt ttatcattta aagtaaatgg ctatgatatt gaaattccaa ttcagaatca      2220
     atttggcaaa tgtaaacgag gaagtgaaat tataatccct cctagaactg aaaaggttca      2280
     ggccataaat ctagaattgg aagaggactg tgtagttcat aaaagagaac tcgttaaagg      2340
     agtattttta gcaagtgttg tagtgcctaa aaatggcttc aaacatgtac aaattgtaaa      2400
     tactactgat gaagaaataa taattccgag ttttgatgtc agctatgagc cattaaagga      2460
     ttatctgtgt gtgcagcata atactgattt gtcattaaat gatcgcaaaa agagggtcag      2520
     agaattatgt tctgctaaat taagcgaaca tgctgaggcc gacagagaat ctgtcgtcca      2580
     aatttgtgaa tcatttagtg acatttttca tttgccaggt gacaaattaa gtgtaaataa      2640
     tttctatgaa caagaaatcc aattagttga taagaaaccc ttgtacagga aaaattatcg      2700
     tttgcctgaa gctcaaaaac ctgtcattaa aaagcatatt gataaacttt tgtcagacga      2760
     aatcatagag ccatctgtca gtgcatataa tagtcctgta ttattagtcc caaaaaaggg      2820
     tgagactgaa gatggtgaga aaaaaactag attagtgatt gatttcagag gattaaatga      2880
     aaaaatctgt tctgataagt tccctttgcc aagaatccaa gaaattttag atttattagg      2940
     tagagctaga tattttagtg ttctagatgc agcctctggt tttcatcaaa taagccttgc      3000
     aaaaaattcg aggcatttaa cagcgttctc aacggatgca ggacattttc aatttacgcg      3060
     tctcccgttt ggaataaaaa ttgctcctag ctctttttca aggatgatgg caatagcgct      3120
     agcaggtttg gattctcgag ctttttgcta tattgatgat gtgattgttt ttggaagctc      3180
     tttgcgtcat cataatatca atttaggtaa agttttccag cgtttgagag aatgtaattt      3240
     gaaactgaac ccagacaaat gcgtatttct gaaacgtgaa gtaatttatt taggtcacaa      3300
     agtgacaagt catggagttt atcctgatcc atcaaagttt cacgtcataa aaaattatcc      3360
     aaccccaaaa actgtaaaag acgtgcaaag gtttgttgct tttgcaaatt attaccgcaa      3420
     atttatatca aacttcgcgg aaaaagcaat gcctcttaat caattactga gaaaaaatgt      3480
     agtctttgaa tggacagatg agcggaaaaa agcgttcgaa actctaaaat actgtctaat      3540
     gaatcctcct gttttgcaat atccagactt tacgaaacct tttattctaa caactgatag      3600
     ttcgagtttc gcttttggtg ctgtattgtc tcaaggcaca gtaggaagtg acaaacccgt      3660
     cgcttacgct agtcgaggga tgaacaagca tgaattaaaa aaacctgtta ttgagaaaga      3720
     attgctagcc attcattggg ctatacaata ttttcgtccc atattgtacg gacgcaaatt      3780
     ttttgtttat acggatcatc gaccacttgt aagtcttttc tctcaaaaag acccttcctc      3840
     taaaatgact cgagtccgat tagatttaga agagtatgat tttactgtaa catacaagcc      3900
     aggaaagttc aattgtaatg ctgatgcgtt atcacgcatt aaaattgaca ccgcttattt      3960
     gaggagtttg attcctcgcg acgttgactc attggtatta acgcgatcga tgagtaaatt      4020
     gaaaaatgcc gaaatttctt caggtagtga atcttcgaaa gagagaaatt ttgaaacgaa      4080
     gcctgatcaa cttcgaattt ggaatgcaac ctccctttcg gacgttcaag gcttgaaaaa      4140
     atgttatttc gaaattaaat ctgacaacgt cgctaattca aaactcagtt gcaaaaatga      4200
     aattgttata catgaggaaa tcgatggtta ccgcgtagtc ttgcgactca gcaataactc      4260
     cactccggac ttaggccggg ttctggaaac gctagatcgc cgaataagta catcaaacct      4320
     agcattgtcg cgtgcggaca aaatattcga ttacgttagc gtaaatgagc ttgtaaaaat      4380
     attaaacaaa gcaccggtgc aacaattaaa atttgtatta tactctcctc cagaatgcat      4440
     ttctgatgag gaaaagcaga aagaaattat ttcatccttt cacagctcag aactaggtca      4500
     ttttggtttg aagaaaactc ttgcaagaat caagcaacgt tttttttgga aacgaatggg      4560
     taagatggtg agtgattatg tccaacgttg caaagcatgt caattgaaca aagtaactaa      4620
     gcacaatcat gaaaagttac aagtcaccac cactccaact acgagttttg aaaccgtaga      4680
     aatagattta ataggaccac ttccgatgac tgaaaatggt catcgttacg ccgttacttt      4740
     tcaatgtaat ttaacaaaat ttgttgatgc tgtacctatt gccgacaaat cagccaaaac      4800
     agtagcaaca gctatcgtcg aaaatttttt ttgtaaatat ggaatgagtc ccaaaatcaa      4860
     aaccgattta ggcacagagt ttgtaaatga gttgttgaca gaaatttgta aaattttaaa      4920
     tgttaatcat aaaacttcaa cagcttttca tcatgaaact ttgggtagcc tagagagaaa      4980
     tcaccgagtt ttgaatgaat ttttgagaat ccataatgag gcaaaagaca gctcatggga      5040
     taaatggata cctttttatt gcctttcata taactcaact cccttatcaa ctgtcaatta      5100
     cactcctttc gaattaatat ttggcaaatt accccagtta ccaaatattg actcgacggc      5160
     agtgccacct tttctcactt taactgagta cggtaaagat attcagcaaa gattatctat      5220
     tacacacaat aaagttgctg aaatgatgaa caaaataaaa caaaaacaat gcgatgaggc      5280
     aaatacagaa ctaaaatcgc cgcttatatt taacactggc gatgtagtca agttacgcat      5340
     tgaaaatcgt cggaaacttg atccatttta ttcaggtcct tatgttgtca ttaacactaa      5400
     tggcgtgaat actatgatca aaaattcaga cacaggtaaa ataagtgttg ttcataacaa      5460
     cagattactt ttctttaagc caccgtgaat ttttgcctta aaaatttcct tttttttcat      5520
     tcacctgcat tttaataatt atttttctac taatttgtat atttttcata ataattttcc      5580
     ctatttgacg tcccttgttt attaaaactt tgtattctaa aaggccatga ggtccaaaca      5640
     aaaatttgtt tttttttccc aattttgtgt aattttcttc ttcatgtaaa aatgttctgt      5700
     taaacatttt tctttccagc ggtagggg                                         5728
//
ID   Gypsy-62_TrVa-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-62_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-234
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 366-366 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 234 BP; 78 A; 51 C; 44 G; 61 T; 0 other;
     tgtcgtgtgg tctacttgcc gaaaagtgca agccgagtat ttgacgcata attccaatga        60
     aataagtaaa caccgatcgc gtgatcgaga agcgtcaaat atgcggactt gggcttttcg       120
     gaaagtggca cacaaaaaga acctcgccac tgaaaaacca accaagtcag ttttgaataa       180
     actatcatgt ctcgaacaca cgtttcacta atctattatt caccttatat tata             234
//
ID   Gypsy-630_AA-I repbase;    DNA;    INV; 4194 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-630_;
KW   Gypsy-630_AA-I; Gypsy-630_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4194
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4194
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2159-2159 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..4155
FT                 /product="Gypsy-630_AA-I_1p"
FT                 /translation="MIDPPAAAQQAAAHNLLQQPVQNFFAHPPDRINIHSH
FT                 SDKARIWNDWIQQYTWFEQASGIKDLPASRQVGILMNSLGPDVIGTFKGLQ
FT                 LTDEEQQDPEAIKKALSDAYSPTANPTYSTYVFLKTDQQPGESFDDFLIKL
FT                 RAAIRDCDFGTEHEGMNINDRLLKDKIVLGISSQKVREKLLSDPKLTLEKA
FT                 IQICKASEKTTETLKEMDSENRGCSAVRSDDDGKPFQCKRCGSKHGKKSCP
FT                 AYGKQCLACQGTGHFAKCCFTKKKDGNAEKKPKKDNKAKKAAAVVKSDEED
FT                 SSEAEVDLYLHAVGTDDDDDGDWFEEATIGNMRLKFKLDCGAQCNVLPLKV
FT                 AKKLSGKMLQKSKTKYIVSYNGEKTKVEGDLTVAAVVNKRKTNLTFKVVDL
FT                 NVVPILGKKTCVDLQMIQRVNSISGRDDIFQGLGCFKNFEYELDLKPDAAF
FT                 EIRPTRAIPHKIRDEVKAELDRMVEMGVIIKQEEPTPVVSNLIVVRKNNKI
FT                 RLCIDPTDVNKNILRRHYPLRTMEEIAARIRNAKWFTILDCKKGFWQIKVA
FT                 ENSQKYLTFGTPWGRYSCLRLPFGLASAPEVFQNMISTLLEGIDGTDVSMD
FT                 DVLIYAETLENLNEITAKVVDRMRNAGLKLNPEKCLFAKKSVPYLGHVVSE
FT                 HGLQPDSEKIEAIRRLKVPENKKQLQRLLGMVTYLGKFIVNLSQITAPLRQ
FT                 LLQKDVPWQWEHEQQAAFDKLMNLLISLPVLKFYDVNKQNVLSVDCSSHAM
FT                 GAVLLQDGHPVAYASKSLTSAQRNYPQIEKEAFAIRFGCQKFHSYIFGKPV
FT                 VVHTDHKPLESIFKKPLDKAPPRLKRIILDVQPYAPEIVYVRGENVPIADA
FT                 LSRDVKNSTPENDEDLEVHVVLNVSKSWMKEIVSKTDEDATLRELIEVIKV
FT                 GWPNDPEEVDPVIKSYWNYRDELSTYEGLIFKGDRLLIPETLRRKTMNIIH
FT                 AGHFGIQSSIKRAKQLVFWPSMGRDIERFVEECSICQKHSRSNVKEPMIVK
FT                 QVPEYPFQIVGSDVFHFNGGNYIVIIDSYSGWIDFKKLRSMESSEVIDHLQ
FT                 SWFAVWGTPEEFHSDNAKQYTSQLFRQFAAEWKFEQVTSSPYYPQSNGLSE
FT                 RAVQIAKNILKKCYEDNSSIQLALLNYRNIPRNSKLLSPNQRLMSRITNSP
FT                 LPVAYQKLKPAVIENVKQNLEAERFKQKDYYDRSAQVRQPMEINNRVQLQN
FT                 PLTKTWESGRVVADANTPRSVIVETDRGDTYRRNMKHVRKSNVVIPAQPEA
FT                 VCDDPRSLILQQSPLAREEQRQPPPVVVDIQFTPVDPTEEHQVNVERGQRT
FT                 ITRSGRLVKPIQRLNL"
XX
SQ   Sequence 4194 BP; 1241 A; 954 C; 1101 G; 898 T; 0 other;
     tggtgtcaga agttggtcag ttttcgcgcc gcggtttaat cggaaaattt cgaaaaaaaa        60
     gtcgcggaaa gatcgaaaaa ataccggaaa accgtagtta aggcgtccgg tcgtgaatag       120
     ggacccaatt cagcgtgaaa tttcggctcg agagcgagga attcgctgaa aatgatagac       180
     ccaccagcag cagcacagca ggcggcagcg cataacctct tgcagcagcc cgtccagaat       240
     tttttcgctc accctccaga tcgcataaac atccatagtc actcggataa ggcgcgtatt       300
     tggaacgact ggattcagca gtatacgtgg ttcgagcaag cgtcggggat aaaggatctg       360
     ccagcatccc ggcaggtggg aatcctgatg aacagtctcg gtccggacgt cattgggaca       420
     ttcaaaggtt tgcagttgac ggatgaggag cagcaggacc cggaagcgat caagaaagct       480
     ttgagtgatg cgtacagtcc gacagccaat ccgacgtaca gcacgtacgt gttccttaaa       540
     acggaccagc aaccgggtga aagcttcgat gattttctca tcaaactgag agcagcaatc       600
     cgagactgtg attttggcac ggaacacgaa ggcatgaata tcaatgaccg cttgctgaag       660
     gataaaatcg tacttgggat ttccagtcag aaggtccggg aaaaactatt gagtgatccg       720
     aagctgacat tagagaaggc gatccagatt tgcaaggcga gtgagaagac gacagagacg       780
     ctgaaggaaa tggattcgga aaatcgaggc tgcagcgctg tcaggtcgga cgatgacggt       840
     aagccgttcc agtgcaaacg ttgcggatcg aagcacggca agaaaagctg tccggcgtat       900
     ggaaaacagt gcttggcgtg tcaaggcact ggccactttg cgaagtgttg tttcacgaag       960
     aagaaggacg gaaacgcaga gaagaagccg aaaaaggata ataaggcgaa aaaagcagca      1020
     gcggttgtta aaagtgatga agaagactcg tcggaagcag aagtggacct gtacctgcac      1080
     gcagtaggta ccgacgacga cgacgacggg gactggttcg aagaggcaac gattggcaac      1140
     atgaggctta aattcaagct ggactgtggg gcgcaatgca acgttttgcc gttaaaagtg      1200
     gcgaaaaaac tctccggaaa gatgttgcag aagtcaaaaa cgaagtacat tgtgtcctac      1260
     aacggtgaaa aaaccaaggt ggaaggggat ttgacggtgg cagcagtcgt gaacaaacgc      1320
     aaaaccaacc tcacgttcaa ggtcgtcgat ttgaacgtcg ttccgatcct cggcaagaaa      1380
     acctgtgtcg atttgcagat gattcagcgt gttaattcaa ttagcggccg tgacgacatc      1440
     ttccaaggcc ttggctgttt caagaatttt gagtacgaac tggacctgaa accggatgct      1500
     gcgttcgaga tccggccgac acgagcaatc ccgcacaaga ttcgtgacga ggtgaaggcg      1560
     gagttggaca ggatggtcga aatgggtgtc ataatcaaac aggaagagcc cacacccgtg      1620
     gtaagtaacc tgatagtagt gcgtaagaac aacaaaattc gtttgtgcat tgacccgacg      1680
     gacgtaaaca aaaacatact tcgtcggcac tatccgctgc gcactatgga agaaattgcg      1740
     gccagaatcc gtaatgcaaa atggttcacc atcctggact gcaaaaaggg tttctggcaa      1800
     atcaaagttg ccgagaactc ccagaagtac ctaacgtttg gcacaccatg gggtcgctat      1860
     tcgtgcttgc gtctgccgtt tggattggcg tcggcccccg aggtgttcca gaatatgatt      1920
     tcgacgttac tggaaggaat cgacggtacg gacgtatcaa tggacgatgt tttaatatat      1980
     gcggaaacgc tagaaaatct aaacgagatc acggcgaagg tagtcgatcg gatgaggaat      2040
     gcgggcctga aattgaatcc tgaaaagtgc ctattcgcga agaaatccgt tccctacctg      2100
     ggccacgtcg tgtcggaaca cggcctccaa ccggacagcg agaaaatcga agcgattcgg      2160
     agattgaagg tgcctgaaaa taagaagcaa ctccagcgac tgctgggaat ggtaacatat      2220
     ttgggaaaat tcatcgtgaa tctgtctcaa atcacagctc cactgaggca gctgttgcaa      2280
     aaagacgttc cctggcagtg ggagcacgaa cagcaggcgg cattcgacaa actaatgaac      2340
     ctgctgatat cgttaccagt cttgaagttc tacgacgtca acaaacagaa tgtgctctcc      2400
     gtagactgca gttctcatgc tatgggagct gtgctacttc aagatgggca tcccgttgcg      2460
     tacgcttcga agtcgctgac atcagcgcaa cggaactacc cacaaattga gaaggaggcc      2520
     ttcgctatcc ggttcgggtg tcagaaattc cactcctata tctttggcaa gcctgtggtt      2580
     gtgcacaccg accacaagcc tttggagtcg atcttcaaaa aacctctcga caaggcacct      2640
     ccaaggctaa agcgaatcat tcttgacgta caaccctacg ctccagagat agtgtacgtt      2700
     cgaggtgaaa atgttccaat cgcagacgct ctaagtcgcg atgtgaaaaa ctcaacaccg      2760
     gaaaacgacg aagatttgga agtacatgtc gtcctcaacg tgtccaagtc ctggatgaag      2820
     gagatagtgt caaaaaccga tgaagatgcc acacttcggg agctgatcga agttatcaag      2880
     gtgggttggc cgaatgaccc agaggaagtt gatccagtca tcaaatctta ctggaactac      2940
     cgggacgagc tttccaccta cgagggactg atcttcaaag gggatcggtt gttgataccg      3000
     gaaacgttgc gccgcaaaac aatgaatatt atccatgctg gccacttcgg aattcagtct      3060
     agcatcaaaa gggccaaaca gctagttttc tggccttcca tgggtcggga catcgagcga      3120
     ttcgtcgagg aatgtagtat ttgccagaag cacagtcgct ccaacgtgaa agaaccgatg      3180
     atagtcaagc aagttccaga gtacccgttt caaattgttg gctcagatgt attccatttc      3240
     aacggcggca actacattgt catcatcgac agctactctg gctggatcga cttcaaaaag      3300
     ttacggtcca tggaatcatc ggaagtgatt gatcacctgc agtcgtggtt cgctgtttgg      3360
     ggaactcctg aagaattcca tagtgataat gccaaacaat acacatcgca actttttcga      3420
     cagtttgctg cggaatggaa atttgagcaa gtgacctcta gtccgtatta tccgcaaagc      3480
     aacgggctaa gtgaacgagc ggtgcagatt gcgaaaaaca tcctgaaaaa gtgctacgaa      3540
     gataacagtt cgattcagct tgcattgctc aattaccgca acatcccacg gaattcgaag      3600
     ctgctttccc ccaatcaacg gttgatgagc agaatcacaa actcgccact tccggttgcc      3660
     taccaaaaac tgaagccagc agtgattgaa aacgtcaagc agaatttgga ggctgaaagg      3720
     ttcaaacaga aggactacta tgatcgatca gcacaagttc gtcaacccat ggagatcaac      3780
     aatcgtgtgc agttgcagaa cccgctgacg aaaacttggg agtcaggacg agtcgttgct      3840
     gatgcaaaca cacctcgatc ggttatagtc gaaactgatc ggggtgacac ctatcgcaga      3900
     aacatgaagc acgttaggaa gtctaatgtg gtcatcccag cgcaacccga ggcggtctgt      3960
     gacgatccga ggtcgttgat cctgcaacaa agtccgttgg ctcgagagga acagcgacaa      4020
     ccacctccag ttgtggtaga catccaattc accccggtgg atccaacaga agagcatcaa      4080
     gtcaacgtag agagaggaca gagaaccatc accagatctg gcagattagt gaaaccgatt      4140
     caacgtttga atttgtaatg tattttatat ttcatttttc ccgaaaaagg gaga            4194
//
ID   Gypsy-630_AA-LTR repbase;    DNA;    INV; 97 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-630_;
KW   Gypsy-630_AA-I; Gypsy-630_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-97
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-97
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2133-2133 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 97 BP; 35 A; 22 C; 14 G; 26 T; 0 other;
     tgtgacgtaa acgttatacc catacaccca tgtattataa tacactgcac cttacggtat        60
     tgatacactt tgagagataa ataaagacca cgctaca                                 97
//
ID   Gypsy-631_AA-I repbase;    DNA;    INV; 4051 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-631_;
KW   Gypsy-631_AA-I; Gypsy-631_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4051
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4051
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2160-2160 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           105..4028
FT                 /product="Gypsy-631_AA-I_1p"
FT                 /translation="MSNEDLSFEQKAMSSLGAVIKPPKPLLIEENMASKWK
FT                 QWWRQFQWYAVATELDKKPPHVQAAMLLSCIGEDCIRVMDTFGLTEAQERD
FT                 VNVLKDKFSAYFVPKSCLTYERYVFGKIVQHPGEQFDTFLTRVREQAKRCS
FT                 FSVLNDSMVKDRIISGTVHTKLIPQLLNDDYDLQKTIDICRNHEQSVKQSQ
FT                 VMLEKSSAEVDLLRQKKFENRDALSEDVFQCNRCGYEHKRKACPAFNKVCA
FT                 KCKRKGHFAGRCFGTAGNEKRANKYVRTVSCEEDDGKSEELSVEELYIGAV
FT                 YDDDENSDDVWFETVQINGMNVCLKLDTGAACNVLPYNIFCKLGEQLMPST
FT                 TKRLVSYSNHKMMVKGEAALRVIVKGHPENAVFKVVDGDVTPILGRKTCVR
FT                 FRLVAKVEELSMEKSLFTGLGCVNGFEYDIDLAESPTFQYNPPRRIPHSLR
FT                 DQVKAELDGMEKMGVIEKISEPTPVLNSMVIVRQKGKLRICIDPSQVNKNI
FT                 LRRVHPLSTIEEISSRICNSKWFTVLDLKKGFWQIPVSERTKKYLAFGTPW
FT                 GRYTCKRLPFGLASAPEVFQKLMNSVLEGLQGVESSMDDILIHAPTKEKLG
FT                 EITKQVLQRLELAGLKLNKEKCAFAKPSLKFLGHIVSQEGLKADPDKLAAI
FT                 QRLKRPENKVQLQRVLGMITYLGKFIENLSAITEPLRMLLIKNVQWEWSNE
FT                 QEESFQKIKQLMQSPPVLAYYDVNANVTLSVDASSKALGAVLLQNGKPVAY
FT                 ASKSLTPAQENYPQIEKEAAAIRFACNKFHEYVYGKNLIVETDHKPLESIS
FT                 KKTLDRAPPRLKRILLDVSQYAPTIVYKKGSDIPIPDILSRDVDNQHEAES
FT                 FDELEVHIVLQMSKTAKAEIIEETSKDSELSQLMSTIMKGWPDNRLGIPAT
FT                 IRKYWNFRDEMSVYEGIVFRSHQILVPTSLKSKMLRMIHVGHAGVQGCISR
FT                 AKQMLFWIGMTNDISRMVEGCPVCEKHQRATTTHNILKSEIPTLPFEIVGS
FT                 DLFHFQGNDFILIADNYSGYFDFVKLREPSSKSVITELKRWFSTFGIPRIL
FT                 FTDNGPQYSSLEFANFSKQWTFDHVTSSPHFPRSNGLSERFVQTAKNLLKR
FT                 CTEDSSDIQLALLMHRNTPRDQQLLSSNQRLMGRVLRTTLPATKEVLQPRL
FT                 VGNVSNNLRHLRDKQKVYADRGTCNAPEFVEGQHVVVQNTKSHLWEKGIVE
FT                 RKLEQPRSYIVKLSNGRHLRRNVRDMRHSRTKSCVLEDDDPDSVLLPTKRE
FT                 EAQPSSTPEEGENRNIPEQVQPSTEEPVRTRSGREVRIRRDNDFEYY"
XX
SQ   Sequence 4051 BP; 1271 A; 793 C; 990 G; 997 T; 0 other;
     tggtgtcaga gtcgtggatt cggcgcgccc gatcggcgga atcgaaccga gttttggaaa        60
     gtcgtggaag ttaagaaaat attgaaatta gtttgttcag caaaatgtcg aacgaagatt       120
     taagtttcga gcagaaggcc atgtcgtcgc tgggagcggt gattaagcct ccaaagccat       180
     tgctcataga ggaaaatatg gcgtcaaagt ggaagcagtg gtggcgccaa ttccagtggt       240
     atgcagtagc taccgagttg gacaaaaaac caccacatgt gcaagcagca atgctgctta       300
     gttgtattgg tgaagactgc attcgtgtga tggatacgtt tggcctcacg gaggcgcaag       360
     aaagagacgt aaacgttttg aaagacaagt tcagtgcata cttcgtaccg aaatcgtgtt       420
     tgacatacga gcgatatgta ttcggtaaaa ttgtgcaaca tcctggagag caatttgaca       480
     cgtttctgac tcgtgtgcgt gagcaggcaa agcgatgctc attcagtgtg ctaaatgatt       540
     caatggtgaa agacagaata atttccggaa ctgtgcatac gaaactgatt cctcagctgc       600
     tgaacgatga ttacgatctc cagaaaacaa tcgacatttg cagaaatcat gagcagtcag       660
     tgaaacaatc acaagtgatg ttggaaaaat ctagtgctga agtggatctg cttaggcaga       720
     agaaattcga gaaccgggat gctctaagtg aagatgtgtt tcaatgcaac cggtgtggat       780
     acgaacacaa gaggaaagca tgcccggcat tcaataaagt gtgcgcaaaa tgcaagcgga       840
     agggccattt cgcaggccgg tgtttcggta cggccggtaa cgaaaagcga gccaataaat       900
     atgtgcgaac ggtatcatgc gaagaggatg atggcaaatc cgaagaactg tcagtggaag       960
     agctttacat tggagcggtg tatgatgatg atgaaaacag tgatgatgta tggttcgaaa      1020
     cagtgcaaat caatggaatg aacgtttgtc tgaagctaga caccggtgcg gcgtgtaatg      1080
     tgttgccgta taatattttc tgtaagcttg gtgaacagct gatgccatcg accacgaagc      1140
     ggctagtgtc gtatagtaat cacaaaatga tggtgaaagg ggaagcagct cttcgagtga      1200
     tcgtcaaagg ccacccggaa aatgctgtgt tcaaagtggt tgacggtgat gttacgccaa      1260
     ttcttggtcg caaaacgtgc gtgcgcttca gattggttgc aaaagtggag gagttgtcga      1320
     tggaaaaatc gttgttcact ggccttggtt gtgttaacgg gttcgagtac gacatcgatc      1380
     tagctgaaag tccaactttt cagtacaacc cgccaaggag gatcccacat tcactccggg      1440
     atcaagtgaa agcagaactg gacggtatgg agaagatggg tgtgatcgag aaaatcagcg      1500
     agcccacacc cgtgctgaac tcaatggtaa tagtccgaca gaaaggtaag cttcgcattt      1560
     gcattgaccc gtcgcaggtg aacaagaata tccttcgccg ggttcatcca ctatctacca      1620
     tcgaggaaat ttcaagccgg atatgtaatt cgaagtggtt taccgtactg gatctcaaaa      1680
     agggcttctg gcaaatacca gtttcagagc gaaccaaaaa gtacttggct tttggtacgc      1740
     cttggggtcg gtacacatgt aaacggctac catttggact agcttccgca ccggaagttt      1800
     tccagaaatt gatgaactca gtcttggaag gtttgcaagg ggttgaaagt tctatggatg      1860
     atattttgat tcacgctcca acgaaggaaa agttaggaga aatcacgaaa caggttctcc      1920
     aaagattaga attagcggga ttaaagctca ataaagagaa atgtgcgttt gccaagccat      1980
     ctctgaaatt cctaggccat atagtgtcac aagaagggct taaggcagac cctgataaat      2040
     tagcagcaat tcagcgtctt aaacgccctg agaataaagt tcagctccaa cgcgtcctcg      2100
     gaatgatcac ctatctagga aaattcattg aaaacctttc tgcaataaca gagcccctca      2160
     gaatgttgct cattaagaat gtacaatggg aatggagtaa cgaacaggaa gaatcgttcc      2220
     aaaagatcaa gcaattaatg cagagtcctc cggttttggc atattacgac gttaatgcca      2280
     acgttacctt atcagtggat gcaagctcaa aggctttggg agctgtattg ctacagaatg      2340
     gcaaaccagt ggcatacgct tcaaaatctc ttacgcccgc tcaggaaaat taccctcaaa      2400
     ttgagaaaga ggctgcggca attcgatttg cttgtaacaa atttcatgaa tatgtttacg      2460
     gcaaaaattt gattgtagaa acggaccaca aacctttgga gtccattagc aagaaaacat      2520
     tggatcgtgc acctcctcgc ttgaaaagaa tcttgctaga cgtgtcacag tatgctccca      2580
     ctattgtgta taaaaaaggt tccgatattc caatcccaga cattttaagt agagatgtgg      2640
     acaaccaaca cgaagcggaa tcatttgacg agctggaagt acacatcgtt ttgcaaatgt      2700
     caaaaacagc caaggctgag atcatcgaag aaactagcaa ggattcggag ctaagtcagt      2760
     tgatgtctac aatcatgaaa ggttggccag ataatagatt aggaattcct gcaacaatta      2820
     ggaagtattg gaattttcgg gacgaaatgt cagtatatga agggattgtg ttccgatcac      2880
     accaaatttt ggtcccgaca tctctaaagt cgaaaatgtt gcgtatgatt catgtgggac      2940
     atgcaggcgt tcaaggatgc attagccgtg cgaaacagat gctcttttgg ataggtatga      3000
     ccaacgatat ctcgaggatg gttgaaggtt gtccagtctg cgaaaaacat caacgtgcta      3060
     cgacaaccca caacattttg aaatccgaaa ttccaacatt accattcgaa attgtgggat      3120
     cagacttatt ccactttcaa ggtaacgatt ttattctgat tgctgacaat tattctgggt      3180
     attttgactt cgtgaaactc agagaaccat catccaaatc agtgataacg gagttaaaga      3240
     gatggttttc aacatttgga atccccagaa tactgtttac ggacaatggc ccacaatatt      3300
     catccttgga atttgccaac ttcagcaagc aatggacctt tgatcatgtg acttcaagcc      3360
     cgcactttcc gaggagtaat ggcttatcgg aacgatttgt acaaacagct aaaaacttat      3420
     tgaagcgctg cacagaagat agctctgata ttcagttagc tcttctgatg cacagaaata      3480
     cacctcgtga tcagcaatta ttatcttcca accaaagatt gatgggtcga gttttgcgaa      3540
     caacactacc agcaacgaaa gaagtgttgc aaccaagatt ggttggaaac gtgtcaaaca      3600
     acttaagaca tcttcgagat aaacagaagg tctatgcgga tcgtggaaca tgcaacgcac      3660
     ctgaatttgt tgaaggtcaa catgtagtgg tgcaaaatac gaagtctcac ctgtgggaga      3720
     agggaattgt agaacgcaaa ctagaacagc cgcgttcgta cattgtcaag ctatctaacg      3780
     gtcgtcacct acgcaggaat gttcgagaca tgaggcactc cagaacgaag tcatgtgtac      3840
     ttgaagacga cgatcctgac tcggtacttc taccgactaa gcgtgaagaa gcacaaccat      3900
     cttcaacacc cgaggaagga gaaaacagaa acattccaga gcaagttcaa ccatcaacgg      3960
     aggaaccagt tagaacgaga agtggtagag aagttcgaat aagaagagat aatgattttg      4020
     agtattatta agtttttgat gaaaggggag a                                     4051
//
ID   Gypsy-631_AA-LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-631_;
KW   Gypsy-631_AA-I; Gypsy-631_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-173
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-173
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2134-2134 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 173 BP; 55 A; 36 C; 28 G; 54 T; 0 other;
     tgtaacataa aaagatagtt attacatttg actttattag ttctcactgt tcagtatccc        60
     cccgacattc gtacacaccc acattgttat gtataccatg tagatagaga gaacggaaaa       120
     taaacgagtc agttattgtt agccacccga ccggacaagt tgtttctttt aca              173
//
ID   Gypsy-632_AA-I repbase;    DNA;    INV; 4297 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-632_;
KW   Gypsy-632_AA-I; Gypsy-632_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4297
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4297
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2161-2161 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..4187
FT                 /product="Gypsy-632_AA-I_1p"
FT                 /translation="MAQGLQFRCFDGETEEWELYKEQLEQHFAVNKVEEGM
FT                 QRAVLINHCDAKTYKLLRDLCTPKTPAEKTYNELCELLSKYFTPPVVVHKE
FT                 RRSFLRARRREDPPESLNAWAARLKNLASNCKLGEHLQHDLLNKFVDGLEG
FT                 KAYDRVCEEDESLTFEKAYEIAMKYEPDEIKPAAVFHMGKGKRHSEEGQAC
FT                 ASGKQSSPGRSVRCLACNRQGHFKRDCRFKDYVCRRCNKRGHLQAACSASG
FT                 NFFVEGQEREDQDAQSEVNLEQNFISKSGASIFSIGRKGYEDPLEIEVKIG
FT                 EKIHKMQLDTGAAISVVSWRYYVNNLNAYELKPTTLRLTGYSGERLLVKGV
FT                 VEPVVVLHNIHKRIVFAVVENGGPPLLGRNFVRSFKLGISCVNAVEDKTSR
FT                 SLQGLLDNHQGLFTEGLGLYKHAVVSIEMEHDAQPIFRKARPVAYKFVDKV
FT                 EYELDEMEREGVITKCDNSKWGTPLVPVLKGDGSVRLCGDYKSTVNRHVKD
FT                 VIHPLPTVDEVFSKLNGGKKFSKLDLSKCYNQFELDEKSREICAISTCKGV
FT                 YKMNRLPFGIRPASGIVQRELEKLLCGIPGVQNFLDDVLVTGNTDEEHLEN
FT                 LARVLEVLEKAGLRLNRSKCQFFKDKVTYVGHVISEEGLRKTSDTIKAIQE
FT                 APQPKNIQEVRAFAGLVNHYARFVRNMADIMSPIYKLLKKGVKFIWSKECQ
FT                 AAFVKAKSEICKDVTLAHFNPNAKLVLICDASMEGVSAVLAQKEESGRERP
FT                 VAFASRVLHAAEKNYSVIDREGLAIVFGLTKFFHYLVGNKFVIRTDHKPLL
FT                 AIFNPHKGIPVIAASRMQRWANFLAGFSYQIEHVSSKDNVADYPSRVPYES
FT                 WKLWKEDDSYVNFLNMDDSVKIDCEVLRRSTDTDPELKIVRDWLTTGIKRD
FT                 GAISEAFRKVAVELSVEDGIVMRGLRVVVPIKLRQAVLSQAHRSHLGIVKT
FT                 KSVLRSYVWWPNIDAELEQHIKNCYECLASRPSPERAELIPWQPPEKVWER
FT                 VHLDFAGPVNGISYLIVIDALSKWVEVFPTLKCDTEFVLEKMVECISRFGL
FT                 MKEVVCDNGSQFTAARFRHFLNANSVRLTFTSPGHPATNGQAENAVKTFKG
FT                 SLLKCIAGNKTNVREIIANFLLGYRSSVHCVTGFSPAEIMLGRRLRTSMDL
FT                 MSPCSLEKPTAVEQEARRSVSKTQCSQIRNYKGSRNIELKVGDKVMARDYT
FT                 NPNKAKWTPGVITSSQGKRNFLVKLSKNDRIIKRHLNQMIRDTRRSEVVVS
FT                 ANEGEQTERTNLSPKPYVAPVKRSLVVTEGALQASSQVTVPAVAIRQDDQE
FT                 HSRNTDRVVDRIDELEEGDNERYFSFRESVSEDEEDTILVSDDSNDGLELA
FT                 GFDRGKWKFRDGVGRMISK"
XX
SQ   Sequence 4297 BP; 1287 A; 768 C; 1174 G; 1068 T; 0 other;
     ttggcgacga gaagataatt taattcgcgg tcaaagtaac catggcgcaa gggttgcagt        60
     ttcggtgttt cgacggggag acggaagagt gggagctgta taaggagcag ctcgagcagc       120
     actttgcggt gaacaaggtg gaggaaggca tgcagagggc ggtacttatc aatcactgtg       180
     atgctaagac gtacaaacta ctccgagacc tctgcacacc gaaaacaccg gcggaaaaga       240
     catacaacga gttgtgtgag ctactgtcca aatattttac tccaccagtg gtggtgcata       300
     aggaacgtcg cagtttcctt cgagccagaa ggcgagaaga tcctccggag agcttgaacg       360
     cctgggctgc gcggttgaaa aatttagcgt caaactgcaa attgggcgaa catttgcagc       420
     acgatttgct caataaattt gtggacggcc tggaagggaa ggcgtatgac agagtatgcg       480
     aggaggatga aagtctaact tttgagaagg cgtacgagat cgcaatgaaa tacgaaccgg       540
     acgagatcaa gccagcagct gtcttccata tgggaaaagg caaacgacac tcggaagaag       600
     gacaggcttg tgcatcagga aaacaatcgt ccccaggaag gagtgtccga tgtttggcgt       660
     gcaatcgtca gggtcatttc aagcgtgatt gcagattcaa ggactacgtg tgccggaggt       720
     gcaacaagcg gggccatctt caagcagcct gttccgctag cggaaacttt ttcgttgaag       780
     gacaggagcg cgaggatcaa gatgcacaaa gtgaagtgaa tttggaacaa aattttatca       840
     gtaagtcagg tgcttcgatt ttttcgattg ggaggaaagg ttatgaggat ccactggaaa       900
     ttgaggttaa aattggagag aagattcata aaatgcaatt agatacagga gcagcaatat       960
     cagtagtttc gtggaggtat tacgtaaaca acctgaatgc atacgagcta aaacctacga      1020
     cattgaggtt gacaggttac agtggtgaac ggttacttgt gaagggagta gtagagccgg      1080
     tggtggtttt gcataatatc cacaagcgaa ttgtttttgc tgtggttgaa aacggtggtc      1140
     caccgttact gggaagaaac tttgttcgat ctttcaaact tggaatatca tgtgttaatg      1200
     ccgttgaaga caaaaccagc cgttcgttgc aaggattgct ggataaccat caaggtttat      1260
     tcacggaagg attggggctc tataagcacg cagtggttag tattgagatg gaacacgatg      1320
     cccaaccaat tttccgaaaa gcaaggccgg tagcgtataa gtttgtcgat aaagtggaat      1380
     acgagttgga tgaaatggaa cgcgagggtg ttataacaaa gtgcgacaac tcgaaatggg      1440
     gtacaccgtt agtgcctgtt ttgaagggag atggtagtgt ccgtctatgt ggtgactata      1500
     agagcacggt gaatcgtcat gtgaaagatg ttatccatcc cttaccgaca gtggacgaag      1560
     tatttagcaa acttaatggc ggaaaaaaat tcagtaagct tgatctttcc aaatgctata      1620
     atcaattcga actagacgag aaatcccgtg aaatctgtgc tatttctacg tgtaaggggg      1680
     tgtataagat gaatcgcctt ccatttggaa tccgtccggc gtcagggatt gtccaacgtg      1740
     aactcgaaaa attactatgt ggaataccgg gtgtacagaa ctttttggac gacgtcctgg      1800
     taacgggtaa tacagatgaa gagcatttgg aaaacctggc aagagtactt gaggtgttgg      1860
     agaaggccgg actcaggttg aatcggtcaa agtgtcagtt tttcaaagac aaagtaacgt      1920
     acgtggggca tgtcatcagt gaagagggct taagaaaaac gagtgatacc atcaaagcta      1980
     tacaagaagc gccacagccg aagaacatcc aggaggtgcg agcatttgcg ggcctggtaa      2040
     atcattacgc cagatttgtc cgaaacatgg ctgacatcat gagtcctata tacaagctgt      2100
     tgaaaaaagg agtgaagttt atctggtcga aggagtgtca ggctgcattt gtgaaggcaa      2160
     aatcggaaat atgcaaagat gtaacactag ctcactttaa tccaaatgcg aagttagtgt      2220
     tgatttgtga tgcatcgatg gaaggagttt ctgcagtcct tgcccaaaag gaagaaagtg      2280
     ggcgtgaaag acctgtagct tttgcttcta gagtgttgca tgcggcggag aaaaactata      2340
     gtgtaataga tcgagaagga cttgcaattg ttttcggtct tacaaagttc tttcattatc      2400
     tagtcggcaa caagtttgtg attcgcactg accataagcc gctgttggct atttttaatc      2460
     cccataaggg cattccagtg atagcagcca gtcgtatgca acgctgggcc aactttctcg      2520
     cgggattcag ctatcagatt gaacacgtca gttccaaaga caacgttgct gattacccgt      2580
     cgcgagtgcc ttatgagtca tggaagctct ggaaggagga tgatagttac gttaatttcc      2640
     tcaacatgga tgattcggtc aaaatagatt gtgaggtact acgaagaagt accgataccg      2700
     atccggagct taaaatcgta cgggattggc tgacaacggg catcaaaagg gatggagcca      2760
     tcagtgaagc gttcagaaaa gttgcagtag aattatcagt ggaggacggc atcgtgatga      2820
     ggggactgag agtggttgta ccgataaagc taagacaagc cgtgttgagt caagcacatc      2880
     gttcgcatct tggtattgta aaaactaaat cggtgctaag aagttatgta tggtggccga      2940
     acattgatgc ggaactagaa cagcacatca agaactgtta cgaatgtttg gcgagtcgac      3000
     catcgcctga gagagctgag ctgattcctt ggcaaccgcc tgaaaaagtg tgggagagag      3060
     ttcatttaga tttcgctggt ccggtgaatg gaatcagtta cctgattgtg atcgatgcgt      3120
     tgtcaaaatg ggtagaagtg ttcccaacgc tgaaatgtga cactgagttt gtgctagaaa      3180
     agatggtgga gtgcatttct cgatttggac tgatgaagga agtcgtatgc gacaacgggt      3240
     cgcagttcac agcggcgagg tttaggcatt ttttgaatgc caactcggtt cgactgacgt      3300
     ttacaagtcc aggtcatccg gcgacaaacg gtcaagccga aaatgctgtt aaaacattta      3360
     aagggtcgct tttgaaatgt atagctggaa ataagaccaa tgttcgagaa ataattgcca      3420
     acttcctgct tggttatcgc agctcagttc actgtgtaac tggattttcg ccggctgaaa      3480
     tcatgctggg aagaagattg cgtacttcga tggatttgat gtctccctgt tctttggaaa      3540
     aaccgactgc agtcgaacaa gaagcaaggc ggtcggtttc gaagacgcag tgttctcaga      3600
     tacgaaacta caaaggatcc aggaatatcg aacttaaggt aggagataag gtgatggctc      3660
     gcgactacac caatccgaac aaagccaaat ggacgccagg agttataacc agcagtcaag      3720
     gaaagcgcaa ttttttggtg aagttatcca aaaacgatcg aataattaaa cgacatttga      3780
     accagatgat tcgggacaca aggagatcgg aagtagttgt atcagcaaac gagggggagc      3840
     agaccgagcg gacgaacttg tcaccaaagc cttatgtggc accggtcaaa cgttcactgg      3900
     tagtcacaga gggcgcactt caagcatctt cacaagtaac ggttccagct gtagcaatca      3960
     gacaggatga tcaggagcat tcaagaaata cagatagggt ggtagataga attgatgaac      4020
     ttgaagaagg agataatgag agatattttt cgtttagaga atctgtaagc gaagatgagg      4080
     aggatacgat tttggtcagt gatgatagta acgatggttt agaattagcg ggttttgaca      4140
     gaggcaaatg gaaattccga gacggagttg gaagaatgat tagcaagtag taattatgca      4200
     tcgttgttat attttcagat ttcagcattt aaacttcttg aatttctcgt aattctttgg      4260
     attttggatt atatgcagat tgatctaagt gtggggg                               4297
//
ID   Gypsy-632_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-632_;
KW   Gypsy-632_AA-I; Gypsy-632_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2135-2135 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 163 BP; 52 A; 25 C; 36 G; 50 T; 0 other;
     tgtgacgata gtaatctgaa gcatcagcgg acccctcgca atgtttatat tgaggctttt        60
     gttagttgtc agaacgagag taaaaacgtg tagcaagatg tgaattatat ctgaataaag       120
     attagtttcg ttttaacgga caaagcgtcg tacattcatt aca                         163
//
ID   Gypsy-633_AA-I repbase;    DNA;    INV; 4444 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-633_;
KW   Gypsy-633_AA-I; Gypsy-633_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4444
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4444
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2162-2162 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4366
FT                 /product="Gypsy-633_AA-I_1p"
FT                 /translation="MATSTAFRPFDAEVEEWQLYREQLEQFFVSTKVGDDM
FT                 KKSVLINHLSPKTYKLLRDLCTPDQPKDKSYDDLCEILTTHFTPPVVVHKE
FT                 RRMFFRARRHENGHETVNQWIVRIKNLATNCKFGDALVHNLVNKFVDGLDG
FT                 KAYDRVCEEDEKLTLEKAQELALKYESDDTAVQLMFVKNKTQGNTKVSGER
FT                 AERRMDSSRGKCLACYKTGHYRRDCRFKEYVCKKCNKKGHLQAACEYQRNF
FT                 YLAAEQSTXSHDGGNRHIEPDQVDLQQNYISKCNTFSLYRLSDHDRAKDWF
FT                 KIDVMIGEDTFTMELDSGAGLCVVSEEFYRKRLARWPLEKSDLQLQLYSGE
FT                 KMGAVGIVVLPLVYSGKKRQILFAVVNERGPPLLGKNFMKAFNMQLTVVHN
FT                 VALGHEAELTKILSEHEKLFSNGLGHYAYGKISLELTPDATPTFKKPRQVP
FT                 FKFREQVAIELDKMEKDGIISKCDSSDWGTPLVPVVKPDSSIRLCGDYKVT
FT                 LNSYLKDVKHPLPTAEDIFVRLNGGRKFSKLDLSKAYNQFELDDRSKEMCA
FT                 ISTTQGVYRMNRLPFGVKPASGIVQREIEKLLCGVEGVSNFLDDVLITGAT
FT                 YEEHLKRLEQVFNILEKAGLKLNKEKCQFFKDKVTFVGYVITEDGLQKTDE
FT                 RIAAIRDAPEPQNVTEVRAFAGLVNYYAKFINGLADIMSPLYSLLRKGAKF
FT                 EWTEECKQAFQKIKHEICKDVTLAHFNPAAELFLTCDASNKGISAVLSQME
FT                 GNVERPVAFASRILHSSEVNYSVIDREALAIVYGVNKFYQYLAGNHFCIRT
FT                 DHKPLLSIFSPKKGIPAIAASRMQRWAHFLSGFSYDIGHVRSQSNIADFPS
FT                 RFPVESWKIWKEEDSYLNFINTDQCGLVDVSILAEESIKDEQLSPVIQLLR
FT                 GTNSDQSLQGSPYMKFINELSLEKGVVMRGCRVVVPVKLRNQVLMKIHQSH
FT                 LGIVKTKSVARSCVWWPGIDNDIEKFSQNCSACLMQSPSPPKSELIPWRPP
FT                 DKVWSRVHVDFAGPVKGLYYLIVIDALSKWVEVYVTKSCTAQFVLEKLTEC
FT                 ISRFGIFDELVSDNGSQFVAGDLQKFLAANGIQHKLTSPGHPATNGEAENM
FT                 VKTFKSSLMKCLYDQNKSVHSIIANFLLGYRKAIHCSTGLSPAHMMLGRDI
FT                 RSSLDIMNPCKKPETQEEKSAKENLFQKQKMQMKHHHGTRKLTFKVGDKVV
FT                 VKDYTNPNKEAWTPAVVEEILGDRSYRVRLKISGRMIKRHLDQIRKDSREN
FT                 DVENDTARLIPSLPRCDSRLIPVKRAFNKDMVEETQQEEHVGDTSVEIFSP
FT                 TSYSSPVKAAEADKVRQVEGKSGEVSSSSXSESQSAGETDLFVSVSETMVN
FT                 ANNTTTGEENIRKALDESVIQSEVIISDDSMEGLEVAGFERGNWRLRDEAG
FT                 KIFKK"
XX
SQ   Sequence 4444 BP; 1395 A; 749 C; 1157 G; 1135 T; 8 other;
     atggcgacga gtatgcaacg cagtgatatg aaggcaagtg ttttgtagac ggagacgagc        60
     tagaaaccgg aagaaaaatt gattcgaatt gcggtttgga aacgacaaga tggcgactag       120
     cacggcgttc cgccccttcg atgcggaggt ggaagaatgg caactataca gagagcagct       180
     ggaacagttt tttgtgtcaa cgaaagtggg tgatgatatg aagaaatcgg ttttgatcaa       240
     tcatctgagc ccgaaaacct acaaacttct gagggacctg tgcacaccgg atcagccaaa       300
     agataaaagc tatgacgact tgtgtgagat attgacgacg cattttacgc cccccgtcgt       360
     ggttcacaag gagcgtagaa tgtttttccg agcaaggcga cacgaaaatg gacatgagac       420
     agtwaatcag tggatagtgc gaattaagaa tctggcgacg aattgtaagt tcggggatgc       480
     gcttgtacat aacctcgtaa ataaatttgt ggacggactg gacggcaagg cgtacgatcg       540
     agtttgcgag gaggacgaga agttgacgtt ggaaaaggca caggagttag cgctgaagta       600
     tgaatcggac gatacagcgg ttcaactgat gttcgtcaaa aacaaaacgc agggaaacac       660
     gaaggttagt ggcgagagag cagaacgacg gatggattct tcgagaggaa aatgtttggc       720
     gtgctacaag acggggcatt atcgacgaga ctgcagattc aaagagtacg tatgtaagaa       780
     gtgcaacaag aaagggcatc ttcaagcggc atgtgagtat caacgaaact tctatctggc       840
     ggcagagcaa tcgacgamtt cacatgatgg tggtaatcgg catatcgaac cggatcaagt       900
     ggatttacaa caaaattaca taagtaagtg taatactttt agtttgtaca gattatcaga       960
     tcacgatagg gcaaaagatt ggttcaaaat tgatgttatg ataggcgagg acactttcac      1020
     aatggaactt gattcgggag cagggctttg tgtggtatct gaagagttct acaggaagag      1080
     gttggccagg tggcctttgg agaagtcgga tttgcaactg cagttgtatt cgggggagaa      1140
     aatgggagct gttgggattg tggttcttcc attagtgtac agtggaaaga agagacaaat      1200
     tctgttcgcc gtagtgaatg aacgtggacc accattactt ggcaagaatt ttatgaaagc      1260
     gtttaatatg caattgaccg tcgtgcataa tgttgcgctg ggacatgaag ctgaattgac      1320
     gaaaatccta agtgaacacg aaaaattatt ctcaaatggg ttgggccatt atgcttatgg      1380
     aaaaattagt ttggaactaa cgccggatgc tacaccaacg ttcaaaaagc cgaggcaggt      1440
     acccttcaaa tttcgagagc aagtagcgat cgagctkgac aaaatggaaa aagacggaat      1500
     aattagtaag tgtgacagta gtgactgggg tacaccgttg gtaccggtag taaaaccgga      1560
     ttcgagtatc aggttgtgtg gggactataa agtgacattg aacagttatt tgaaggacgt      1620
     taagcatccg ttacccacgg ctgaagatat tttcgtaagg ttgaacggtg gccgcaaatt      1680
     ttctaagtta gacttgtcta aagcgtacaa ccagtttgag ttagatgatc gctctaaaga      1740
     aatgtgtgca atttctacca cccaaggtgt gtatcgtatg aatcggttac catttggtgt      1800
     gaagccagca tcgggaattg tgcagcgcga aatagagaaa ctgttgtgtg gtgtagaggg      1860
     ggtgtctaat tttttggacg acgtacttat tacgggagca acatatgaag aacatttgaa      1920
     acgtctggag caagtattca atattcttga gaaagcgggg ctgaaattaa acaaggaaaa      1980
     gtgtcagttt ttcaaggata aggtgacgtt cgttggatac gtgatcacgg aagacggttt      2040
     gcaaaaaaca gacgagagga ttgcagcaat acgtgatgca cccgagccac aaaatgtgac      2100
     ggaagtaaga gcttttgctg ggctcgtaaa ttattatgcg aagttcataa atggcctggc      2160
     ggatattatg agcccgctgt atagtctact acgcaaagga gcgaaatttg aatggacaga      2220
     ggaatgcaaa caagcttttc agaaaattaa gcatgaaatc tgtaaagacg tcactttagc      2280
     acatttcaat ccagcagcgg agcttttttt aacgtgtgac gcttctaaca aaggaatttc      2340
     tgcagtattg agccagatgg aaggaaatgt ggagagaccg gtagcatttg cttctcggat      2400
     cttacactcg tcagaagtaa attatagcgt tattgatcga gaggctctgg caatagtgta      2460
     tggcgtmaat aaattttatc agtatctggc cggtaatcat ttctgcatac gaacggatca      2520
     taaaccgtta ttgagcattt tcagtccgaa gaaaggaatc ccagcgatag ctgccagtag      2580
     aatgcaaaga tgggcccact ttctgtcagg gtttagctac gacattgggc atgtcagatc      2640
     tcagtcaaat atcgctgatt ttccatcgcg gttcccggtc gaatcttgga aaatctggaa      2700
     agaagaggat tcttatttga attttatcaa caccgatcaa tgtggattag ttgatgtttc      2760
     gattttggcc gaggaatcca ttaaagatga gcaactgagt ccagtgatac aattgttgag      2820
     aggaacgaac agtgatcagt cgttacaagg aagtccttat atgaaattca tcaatgaact      2880
     ctcgttggaa aagggtgttg ttatgcgcgg atgcagggtc gtagtgccag tcaagttgag      2940
     gaaccaagtc ttgatgaaga ttcaccaatc gcatcttgga atagtgaaaa ctaaaagcgt      3000
     ggcacgctcc tgcgtatggt ggccggggat tgacaacgat attgaaaaat tttcccaaaa      3060
     ttgttcggca tgtctwatgc aaagtccttc accgccaaaa tcagagttga ttccatggcg      3120
     acctcctgac aaagtctgga gtagggttca tgttgatttt gcaggtcctg ttaagggttt      3180
     atattatttg attgtcattg atgctctttc aaaatgggta gaggtttatg ttacaaaatc      3240
     ttgtacagcc cagttcgtcc tcgaaaagct gacagagtgc atatcaaggt ttggtatttt      3300
     cgatgagttg gttagcgaca atggttctca gtttgttgcg ggagatctgc aaaagtttct      3360
     ggctgctaac ggaattcaac ataagttgac aagtccagga caccctgcaa ctaatggaga      3420
     agctgaaaat atggtaaaaa cttttaaatc gtctctcatg aaatgcttat atgatcaaaa      3480
     caaaagcgtt catagcatta tagcaaattt cctgttggga tataggaagg ctatacattg      3540
     ctctacggga ttatcgccgg cgcacatgat gctgggaaga gatattcgaa gttccttgga      3600
     cattatgaat ccatgtaaga aaccagaaac acaagaagaa aaatctgcga aagagaatct      3660
     gtttcaaaag caaaaaatgc agatgaagca tcatcatggt acgaggaaac tcacctttaa      3720
     agttggagac aaagttgtgg tgaaggatta cactaatcct aataaggaag cgtggacacc      3780
     agcagttgtt gaagagatac tcggagatcg cagctaccgt gtacgtttaa aaatctctgg      3840
     aagaatgatc aagcgacact tggaccaaat tcgaaaggac tcacgcgaaa atgatgttga      3900
     aaatgacaca gcacggttga ttcccagcct accacgatgt gatagcagat tgataccagt      3960
     gaagagagct ttcaataagg acatggttga agaaacacaa caagaggagc atgtgggaga      4020
     tacttctgtc gaaatttttt caccaacatc ttattcttct ccmgtaaaag cagcagaagc      4080
     tgataaggtg aggcaagttg agggaaaaag tggggaagta agttcaagta gtgkttcaga      4140
     aagtcagtcg gcmggagaaa ctgatttgtt tgttagtgtg tctgaaacga tggttaatgc      4200
     caacaatact accacggggg aagaaaatat ccgcaaagcc ctggacgaat cagtcattca      4260
     gtcggaagtt attatttcgg acgatagtat ggagggtttg gaggtggcag gattcgagag      4320
     aggaaactgg agattgaggg atgaagcggg aaaaattttt aaaaagtaat aacatacatc      4380
     tatttgaatg atttcagatg caatttacta gattcattat ctaacaagaa gcttagtgtg      4440
     aggg                                                                   4444
//
ID   Gypsy-633_AA-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-633_;
KW   Gypsy-633_AA-I; Gypsy-633_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-201
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-201
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2136-2136 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 201 BP; 68 A; 30 C; 46 G; 57 T; 0 other;
     tgtgatattt gtatcagtgt aagaacaggg ctgccaacca gcagcgtaca agtaccttga        60
     aatgaagaag aagagaggag agaaaaatag cgcgtcattg ttataacgtc cgtgttcttg       120
     gctagttgtg caatcagaga ataaacttgt aatcatcaga atttgtgcgt taaatatatg       180
     tttatttcgt gaaacatcac a                                                 201
//
ID   Gypsy-634_AA-I repbase;    DNA;    INV; 4350 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-634_;
KW   Gypsy-634_AA-I; Gypsy-634_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4350
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4350
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (18-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4350 BP; 1427 A; 884 C; 1052 G; 987 T; 0 other;
     tggtgtcaga aaagctaagt aaaaagattg agactcacgc gtgcatacgg tttagtgcaa        60
     tcatccggta aaagttatgt cgtaatagcg ataaccgtga agaaaaccgt aaaaaaaaaa       120
     ataatccgta gcaaaatggc ttccgagaac gaagacaatg ccggagccgt cggtgaaaac       180
     ttgaacgtaa cctcaccaag cgccatcgca gtggccgcag ctagtgccgc tgtaacaaaa       240
     gtgataaata gtagtatacc atttcccgca ccactatctt tgtctggaaa tgtgcgtcaa       300
     catgtagagg atttcataga agaatttgaa atctatttga tcgcgtctgg tctcgagaat       360
     cgagaagaaa gagtgaaaat agccactttc aaagcggcgc ttggattaga agccagaaaa       420
     attttcaaga actggccgct ggagccagca gaaacgaaca cagtggttgc gtgtttggag       480
     tctttgagaa aatatatggt gcccaaaaga aacgtcaaac ttgctcgcta tgagtttttg       540
     caatgtaaac agcaaggggc tagtgatgtt tgtgagggcg aaacaatgtc gcaattcatc       600
     aatcgagcca gagcactcgt caaagattgt aactggggag aaatggaaga agaaatgctt       660
     cgtgacataa tcgttgctgg tttgagtgat acccgactga agaaatcgtt cattgacaaa       720
     ccagaactaa cagcaaaaca ggtgatcgat cagtgtatgt cggaggaagc aacaagaatg       780
     gagctggaga agaataagtg ggtagaagaa gaacacgttg taaataaagt gtataaaaga       840
     agaaataaat cgaaactgtg ctcccactgc ggaaacgaat accacaaaag cttggcagat       900
     tgtcccgcac aaggcagtga atgtcactat tgcaagcagc ggaatcacta tgaagtaatg       960
     tgctggaaga aacgagaaga tcttgaaagg aagaagaaaa ccgatctgcg gggcaagaag      1020
     aagaaaagtg ggtggttcaa taagaaagtt cacactattg acgaagaaga atccgaagag      1080
     agcagtttgg aagaagattt gaaagaagaa gtggttgatt caatcgagta tctgtacagt      1140
     gtggaacaag aacacgctag tctcctaaaa gccgaactaa cattcgagga caggcatagt      1200
     aaaccgaaac aagtcaaatg tattttggat accggagcca cttgcaacgt agtaggctta      1260
     ccgtcgctgc tggaaattct aaacgtgaaa tcagttgcac tggataaaag tcaggttgtc      1320
     ctgaagggat ttggaggctc ttcgattagt acggttggaa gaacaatcgt cgatgttcgc      1380
     cataaaggaa agcaatacaa agcagtgttc aacgtagtac cgttttctca aatgccgata      1440
     ctctccaagc atacgtgcct gaagttgcag ttaatcaagc tttgcatgac agtgagtggt      1500
     caacaacaag cggaagccag aaacatcata tcccgatttc caacagtatt tgaaggatta      1560
     ggtagactcg agggagacgt acatcttgat gtagacccgt ccattcagcc aactgtgcag      1620
     accgctcgcc gcattccaat tacgctgagg gacgagctaa aacagcaact ggacgaaatg      1680
     gaaagaatgc agattgtcgc cagggtgaat gagcccaccg attgggtgag taaccttgta      1740
     ctagttaggc gaaatgataa agttcgaatt tgtattgatc caattttatt gaataatgca      1800
     ctcaaaaggc cgcattatcc aatcccaaca ataaatgagc tattaccaga acttgcaaac      1860
     gcaaaaattt tcagcactgt tgatgctaaa tctggttttt ggcaggtaaa attggacgac      1920
     gaaagctcca agctcaccac cttctggact ccatcagggc gctatcgatg gttaagaatg      1980
     ccttttggaa tctcaccggc accggaaatt ttccaacgga aattgcacga agcagtccat      2040
     ggtttgaaag gcgtgcgtgc gttggctgac gacatcctta tttttggctg tggagcaacc      2100
     gtcgaggagg ccatggccga ccacaaccaa aacctgcaat cctttatgga gagaatggtg      2160
     gcgaaaaatg tcaagctaaa caaagataaa attcgtttat gccagcaaac agttaagttt      2220
     ttcggtcacg tactcacatc cgatggtgta aaaccagatc acgacaagat tcgcagtatt      2280
     acggcaatgg aagagccaaa tgatgaggct gcacttctcc gtttcttggg aatggtaaca      2340
     tatttaacga gttacctgcc acagctagct acagttgctg aacctttgag acgtctgacg      2400
     aagaaaaatg agccatggaa atgggaatcg gaacatcgag aagcattcaa aaatttgaag      2460
     tcgctagtga cgaaagcccc ggtactaaaa tacttcgacg ctacgaaaga cgtaaccata      2520
     cagtgcgaca gcagcagtgt tgggttagga gctgtgctct tacaagatgg tcaaccagtg      2580
     tgttacagct cgaagtcact cacaccgact gagagacgat atgcacaaat cgaaaaggag      2640
     atgctagcga tattgtatgc ttgtcggaag ttcgaattct acattgttgg aaaacaagta      2700
     actgttcaaa cggaccatca accgctggtg agaattttca agcgaccgtt aactgacgcc      2760
     ccaatgcgat tgcagcggat gctgcttgca ctacaaagat acaaggtcac tttgcagttc      2820
     aagcccggga acgaagtgat tatagcagac atgctgtcga gggcagctct tgccgatgga      2880
     gataatacga atcaagacat ttacgacata tacactacgg atatggactt caccctgaca      2940
     gagttggagc atataaacgt gatggactac gttcctgttt cggattacag gctggatcaa      3000
     atacgcaagg aatcttctaa ggacttggat atccaatgga tcattcgagc aatcattgaa      3060
     ggatggccca ttagggtcga gaacgttccg gatcgcgtac gggcattttg gaaacacaga      3120
     gcggatttga gcacacaaaa tgggattgtc tacagaaacg atcggatttt ggtaccaaca      3180
     accatcagac cggaaattct gaaacgtcta catgcttctc attccggcat tgaagctaca      3240
     acgaaactgg ctcgggacac agttttctgg ccaggaatca atcgtgacat aagggaatgt      3300
     gttcagaatt gtgacatttg cctcaagtat tcgccaaatc aacaaaacca gccaatgcaa      3360
     actcatcaga ttccatgcta tccattccaa aaagttagtt tggatctttg tgaagtacag      3420
     tttgcgggca agaagaaagt gtacttaatc acagtggacc atttctcgga tttcatcgaa      3480
     gtcgacgagt tgcagcgaga tgcaactgca agtaccattg tgcagaaatg ttgtcagaat      3540
     tttgcacggt atggtacgcc aatgtacgtg acgacggatg gaggtcccca attcgtcagc      3600
     gaagaatttc ggaatttcgc tgagagatgg gagttcagac atactatgtc agcaccttat      3660
     caccagcaag ggaatggaaa agcagagtct gcggtaaaaa ttgtcaaacg tttgataaaa      3720
     aaatcttccg aaacgaaaag tgatttctgg caatcactac aacaatggcg taatgtaccg      3780
     aagaattgtg gaagctctcc agcacagcga gtgttcaacc gtcgaacacg gttcaatatt      3840
     cccatggcag aaggaaaatt tgaacccaaa gtgcaagaag gtgtgaaaga acagataaag      3900
     tataatcgac aacgcaccaa gtactactac gatcgtacag ctcgaaatct gccaacttta      3960
     gaagttggac agccagtatt cgtaaagagg aaaccgtcag atgaccgctg ggataaggga      4020
     atcgttcaca gcgcattcaa cgatcggtct acgattgtgg acatacaagg gcagaggtgt      4080
     cggagagata acgtcatgat caagccagcg ggaacaagcc gttctatcga gcaaacacac      4140
     cttccagaac cgcaagcatc acccggaaaa aagctgaagg ctgaagaaaa cgacactgct      4200
     aacgagacgt tcacacccac atcggaggtt acagcatctt caacggctca tgaccgaccg      4260
     agacgtacaa cacgagagcc gaggtggttc aaagactatc aaatgtgtta atccattaat      4320
     tgttctttat tcttatttga aaaagggaga                                       4350
//
ID   Gypsy-634_AA-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   18-DEC-2018 (Rel. 26.04, Created)
DT   18-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-634_;
KW   Gypsy-634_AA-I; Gypsy-634_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-141
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-141
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2137-2137 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 141 BP; 48 A; 31 C; 17 G; 45 T; 0 other;
     tgttacatta tcaccttgta ttttacaacc ttgaatttat aatgtcagtc tggcaacacg        60
     gaacataata aagattcagt cctatccaac actcactacg taaagacgtg ttaagtttct       120
     ttccgatcca ttaacaaaac a                                                 141
//
ID   Gypsy-635_AA-I repbase;    DNA;    INV; 4227 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-635_;
KW   Gypsy-635_AA-I; Gypsy-635_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4227
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4227
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2163-2163 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..4184
FT                 /product="Gypsy-635_AA-I_1p"
FT                 /translation="MANENPIGAQLNAAAQQEVRVINSSIPFPTPLLLAGN
FT                 LRENISNWKDTFETYLIASGVEHLEERVKVATFKSALGTEARKIFNLWPLQ
FT                 DAEKNTVVACMESLSRYMIPQRNVKLARYEFYQSRQEFGDDGTEPETMTQF
FT                 INRARELVKDCNFGEMENEMLRDKIITGIRDLSLKKRFIEQEDLTAEKVIQ
FT                 QCQAEEVTREEMKRNQWLEPQQHAVNKLVDKKSANKQCSFCGRGYHTNLSD
FT                 CPARGATCNFCSMKNHFATVCRKRREQMKPPGITSKQAKRNVNTLETEQEN
FT                 NSITQGNEIDEESGAMCQYLYGVEEEENALLKVNISFLDINNRQRDVRCIL
FT                 DSGASCNVIGQENATNLLRTKQLTLDNCRPLLKAFGGGTVKSLGRIVIPCR
FT                 HNTEEYKMVFHVVDFNQAPILSLKTCLKLKLIQVCHSIDVNQESSAKQIIE
FT                 RYPEVFTGLGKLEGTVHLELDAAVHPVVQQPRRIAVTMRDELREVLSELER
FT                 QGVIAEEKDHSEWVSNLVLVKRNGKLRVCIDPTVLNKALKRPHYPMPTLDE
FT                 LLPELSKAKVFTTVDAKSGFWQLQLDDESAKLTTCWTPFGRYKWLRMPMGI
FT                 SSAPEIFQLKAHQIIQGLRNVRALMDDFMIFGCGETMDEAMADHNRNLDAF
FT                 LQRMKECNVKLNPDKVKLCQQSVKFFGHVLTSTGVKPDPEKVNSIINMPRP
FT                 EDGTAVQRFLGMITYLSQYLPDLSTVAEPLRRLTHKTEPWNWSPDHEDAFR
FT                 RLKVMITSAPVLRYFEITKPAVIQCDSSSVGLGAVLLQEGQPVVYASKTLS
FT                 ATERKYAQIEKETLAILFACRKFEMYILGRPVTVQTDHQPLIRIFQKPLTE
FT                 APLRIQRMMLGLQRYQITLKFMPGKEVIIADMLSRAAVDSNDNTCREIYDI
FT                 YGIDTVNAVDYLPIADEKVEQIRKESQADPEIQAIVAYIVNGWPDKFNAVP
FT                 QNLQVYWKYKLELSTFNGLVLRNDRILIPRNMRNHILERLHLSHSGIEATT
FT                 KLARDTVFWPGIKDHIRRTVQNCEVCAKYSASQQPQAMQSHKIPLYPYQKV
FT                 SMDLCECDLEGKRRVFLITVDHFSDYFEIDELKTPNAIAVVQVCRKNFSRF
FT                 GIPQEVSSDGGPQFTNETFNRFAESWGFKHSISAPYHQQANGKAESAVKIA
FT                 KLLMKKADESKQDFWRVLLQWRNTPNKIESSPVQRLLNRRTRSGIPMSEEK
FT                 YSPKVEEGVKERIVKSRQQAKYFYDRKTKPLPALEFGQPVYVKMKPSDSNW
FT                 RKGTVLDPVTDRSTVVEVAGRNYRRDNTCIKPAHPPDALQSNQVEPRLDTK
FT                 FSKQAVVEHHQYPEPNLEDGQPAMTEVDRPRRTIRVPKRYEDFEMY"
XX
SQ   Sequence 4227 BP; 1340 A; 904 C; 1014 G; 969 T; 0 other;
     tggtgtcgga acgggaatta agttgtaatt agcctaaaaa gtagctcgaa tttcgcgtcg        60
     gaagttttaa agtggagaag agtcttggaa gtatatcgaa ggaattcgga atggcgaacg       120
     aaaaccctat tggagcacag ctgaacgcag ctgcacagca ggaagttcgc gtaataaaca       180
     gcagcattcc atttccaact cccctgttat tggctggtaa tttgcgggaa aacattagca       240
     actggaaaga tacattcgag acgtatctga tcgcttcggg agtcgaacac ctggaggaac       300
     gcgtgaaagt tgcaacattc aagtcagcgc taggaacgga agcaaggaaa atattcaatc       360
     tgtggccact gcaggatgcc gagaaaaaca ccgttgtggc atgtatggaa tcgctgtcga       420
     ggtatatgat tcctcaaagg aatgtgaagc tggcgagata cgagttttac cagagtcgac       480
     aagaattcgg agacgatggg actgaaccgg agacgatgac acagttcatt aatcgcgcaa       540
     gggaattggt gaaggattgc aattttggag agatggagaa cgaaatgctg agagacaaga       600
     ttatcacggg aatccgggat ctatccctga aaaagcgatt catcgagcag gaggatttga       660
     ccgccgaaaa agttattcaa caatgtcaag ccgaggaggt tacgcgagag gagatgaaac       720
     gaaaccagtg gttggagccg caacaacatg cggtaaacaa actcgtcgac aaaaaatcgg       780
     ccaacaaaca atgttccttt tgtggccgtg ggtatcatac caatttgtca gattgcccag       840
     cgcgcggagc aacctgtaat ttttgcagca tgaagaatca cttcgcgact gtttgcagaa       900
     aaagaaggga acaaatgaag ccaccgggaa tcaccagcaa acaagcaaaa cgtaatgtca       960
     acaccctgga gacagaacaa gaaaacaaca gcattactca aggaaacgag atcgacgagg      1020
     aatctggagc tatgtgccaa tatctctacg gcgtggagga ggaagaaaat gctcttctga      1080
     aagtaaacat ttccttcctg gacatcaaca accgtcaacg cgatgttcgt tgtattttgg      1140
     attctggagc atcgtgtaat gtaattggcc aggaaaatgc taccaatctt ctgagaacga      1200
     aacagctaac gttggacaac tgccgaccat tgttgaaagc gtttggagga ggaactgtga      1260
     agtcactagg tcgaatcgtc ataccctgtc gtcataacac agaggaatac aaaatggtat      1320
     tccatgtcgt cgatttcaat caggctccga tcctgtcatt gaagacgtgt ttaaaattga      1380
     aattgatcca agtttgccat tcgatcgacg taaatcagga atcatctgcg aagcaaatca      1440
     tcgaacgcta cccagaagtg tttaccggat tgggaaaatt ggaaggaacc gttcatctgg      1500
     agcttgatgc tgccgtgcac cccgtcgttc aacaaccacg acgcatagca gttaccatgc      1560
     gcgatgagct acgtgaagtg ctttcagaac tggagcgaca aggtgtcatc gccgaagaga      1620
     aagaccattc agaatgggta agcaacctag tgttggtcaa acgaaatgga aaacttcggg      1680
     tatgtattga tccaacggta ctaaataaag ccctaaaaag gccacactac cctatgccaa      1740
     ctctggacga gctcttacca gagctatcga aagcaaaagt gttcactacc gtcgatgcca      1800
     aatcgggatt ttggcagttg cagttagatg acgaaagtgc aaaactcaca acctgctgga      1860
     caccttttgg ccgttataaa tggctgcgaa tgccaatggg tatctcgtct gcaccagaga      1920
     tattccaact gaaagcgcac caaattatcc aaggattgcg gaacgtgaga gcattaatgg      1980
     acgacttcat gatcttcggt tgtggagaaa ccatggacga agctatggct gatcacaaca      2040
     ggaacctgga cgcatttttg caaagaatga aggagtgcaa cgtaaaactg aacccggata      2100
     aagtcaagct atgtcaacag agtgtcaaat ttttcggtca cgttttaaca tcaacaggag      2160
     tgaagcctga tccggaaaaa gtaaacagca tcatcaacat gcctcggccg gaagacggaa      2220
     ctgcggttca acgatttttg ggcatgatca cttatttgtc gcaatatctt ccggatttgt      2280
     ctacggttgc tgaaccgtta agacggttga cccacaaaac ggaaccctgg aattggtcac      2340
     ccgaccatga agatgcattt cgccgattga aggtaatgat cacgtcagcc ccagtcttgc      2400
     ggtatttcga aatcaccaaa cctgcggtga tacaatgtga cagtagcagc gtaggactag      2460
     gcgctgtcct ccttcaagaa gggcagccag tcgtctacgc gtctaagacc ctcagtgcta      2520
     ctgaacgcaa gtacgcccag atagagaagg agacattagc aatacttttt gcatgtcgaa      2580
     aattcgaaat gtacatactc ggacgccctg tgacggtaca aaccgaccat caaccgttaa      2640
     ttcgaatttt ccagaaacct ctgacagaag ctcctttgcg catccagcgc atgatgctcg      2700
     gactgcaacg ttaccaaata accttgaagt ttatgccagg taaggaagtc attattgcag      2760
     acatgctatc tcgagctgcg gtagacagca acgataacac atgtcgtgaa atttacgata      2820
     tatatggtat agatactgta aatgctgtcg attacttacc tattgcagac gaaaaagttg      2880
     aacagatccg aaaggaaagc caagcagatc ctgaaatcca agcgattgtt gcatacattg      2940
     taaatggatg gcccgataag tttaacgcag tccctcaaaa cttgcaagtg tactggaagt      3000
     acaaactaga gcttagcact tttaacggat tagtattgcg aaatgatcgc atcctaattc      3060
     cacgcaacat gagaaatcac attttggaga gactacacct gtctcattct ggaattgaag      3120
     cgaccaccaa attggccaga gatactgtgt tttggccagg tattaaggac catatccggc      3180
     gaactgttca aaattgtgag gtctgtgcga aatactctgc tagccagcaa ccccaagcca      3240
     tgcaaagtca caaaattcca ctatatccat accagaaggt atcaatggac ctatgtgaat      3300
     gtgacttgga aggtaagaga agagttttct taatcacagt agatcacttt tctgactact      3360
     ttgagatcga cgagttgaaa actccaaatg cgattgcagt ggtgcaagta tgtcgaaaaa      3420
     acttttcaag gttcggtatt cctcaagaag tgtcgagtga tggaggtccg cagtttacga      3480
     atgagacgtt caaccgattt gcagagagtt ggggtttcaa acatagcatc tccgcgccgt      3540
     accaccaaca agctaacggc aaagctgaat cggccgttaa aatcgcaaag cttcttatga      3600
     aaaaggctga cgaatcgaaa caagattttt ggcgagtgtt gctgcaatgg agaaataccc      3660
     ccaacaaaat tgaaagttca ccagttcaac ggcttcttaa taggagaaca agatcaggaa      3720
     tcccaatgtc cgaagagaaa tactcaccaa aggtggaaga gggggtgaaa gagcgaatcg      3780
     taaagagtag acaacaagcc aagtatttct atgaccgaaa gacgaagcct ctcccagccc      3840
     tggagtttgg gcaaccggtt tatgtgaaga tgaaaccgtc ggattcaaat tggcgaaaag      3900
     gaactgtgct agacccagtc acagatcgtt ctacggtagt tgaagttgct ggtcggaatt      3960
     atcgtcgaga caacacatgt atcaaaccag ctcatcctcc agatgctctc cagtccaatc      4020
     aggtcgaacc acgtttggat acaaaatttt caaagcaggc tgtcgtcgag catcatcaat      4080
     acccagaacc aaaccttgag gatggccaac cggctatgac agaggttgat cgtcccagac      4140
     gaactattcg agtcccaaag agatatgaag attttgaaat gtattaaatt gcaggatgcc      4200
     gatgcttttc tttgatgaga aaggaga                                          4227
//
ID   Gypsy-635_AA-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-635_;
KW   Gypsy-635_AA-I; Gypsy-635_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-179
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-179
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2138-2138 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 179 BP; 57 A; 38 C; 23 G; 61 T; 0 other;
     tgttatatat cattaataat ttgatgtcgt ttgctaaatc aagatttgta tcctactcta        60
     tttgccatac tagttatgcc cagctctatt tgctatacaa acaagtctga cgtatacaca       120
     tgaaataaac agttatgttc tgcacaccga gcccaccaca cgtttctttg aataaaaca        179
//
ID   Gypsy-636_AA-I repbase;    DNA;    INV; 4618 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-636_;
KW   Gypsy-636_AA-I; Gypsy-636_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4618
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4618
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2164-2164 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..4371
FT                 /product="Gypsy-636_AA-I_1p"
FT                 /translation="MLSSMHHQTAPNPEQILDSLASNIQEFRYEPDANVTF
FT                 AGWFVRYEDLFAKDAVRLDDEAKVRLLLRKIGPMEHERYTSYILPKLPKDI
FT                 SFSDTVIKLKSLFGTSESVLSRRYRCLQVAKQATEDFKTYACRVNKLCVEF
FT                 ELGKLTEEQFKCLVFVCGLKAESDAEVRTRLLSRIEERTDITLEHISDECQ
FT                 RLLSIKHDTAMIEAGQHSAAVQAVKSKHHVGKRASRYERRSPVSGFSSGSS
FT                 KATGTGPGSPCWNCGSMHYSKDCPFKKHQCRECRQVGHKDGYCSSARKARS
FT                 PRSPNKRFSPRKTETKSVVVKNVKKRRRFVSALVNDRQISLQLDTASDISI
FT                 ISEKTWRRIGRPTSSPVTVEASTASGKPLKLEFECKCAISINGVKRQVRFY
FT                 VVKQQLNLLGLDLIDQFNFWPMPMDRFCNHVSSSPTAVGTLKQAFPTVFND
FT                 APGLCTKAKVHLTLKEGAQPVFRRKRPVAYAMYKTVDEELDRLEKAGIITP
FT                 VEHSEWAAPIVVVRKASGAVRICGDYSTGLNDALQPHQYPLPLPQDIFVKL
FT                 ANCKVFSQIDLSDAFLQVEVEEESREMLTINTHRGLYRYNRLPPGVKAAPG
FT                 AFQQLVDTMLAGLKCTSGYLDDVLVGGVDEEDHQRNLENVLRRLQEYGFTI
FT                 KAEKCSFGQQQIKYVGHLIDEHGLRPDPAKIEAIRNMPAPTDVSGVRSFLG
FT                 AINYYGKFVPSMRTLRYPLDELLKQGKKFVWSSECQQTFENFKKILSSDLL
FT                 LTHYNPELDIIVSADASSIGVGATISHKFPDGSIKVVQHASRALTSAEQAY
FT                 SQPDREGLAIIFAVTKFHKMVFGRKFTLQTDHAPLLRIFGSKKGIPVYTAN
FT                 RLQRWALQLLMYDFKIVYVNTDKFGNADVLSRLIEHHVKPEEDFVVASIVL
FT                 KKDVKALATNSIDALPLNFKMVQEATRSDPDLGKLYRFVQEGWPQSKSAIT
FT                 SREIKRFYDRRESLSTIQGCIMFGERLVIPSSYRKRCLHHLHRGHPGMQRM
FT                 KAIARSYVYWPSLDEDIVVYVGSCHHCAAVAKSPPKSAPLSWPKSTYPWQR
FT                 VHVDYAGPIEGEYFLLSVDSYSKWVEIVKTKSTTATTTVSILRSLFARLGM
FT                 PETLVSDNGPQFACAKFDKFCLENGVNHITTAPYHPQSNGQAERFVDTFKR
FT                 SVKKIREGKGAIQEALDIFLMTYRASPNPATPEGKSPSEAMFGRRIRIGLD
FT                 LLRPPTTPTLESRDEHLQRSFKKGDCVYAKVYSNNQWRWVPGVVLEPIGRV
FT                 MFNVWVEDKRMVRSHINQLRTRVTDDKPPISNHRQSYRSTSSAIATSPVST
FT                 PPCYNLQASIINAWATV"
XX
SQ   Sequence 4618 BP; 1253 A; 1198 C; 1147 G; 1020 T; 0 other;
     gtggcgacga aaattgagcg aaaatagtga gaaacagcgg taaaagtgtc tcccgcgagg        60
     aagaggagaa gaatggacga caacaatacg ccgtccgggg gtgatcgttc gcatccacca       120
     tcaattgcga cgaatggact gcaacaagat caggcaggac aacatcaaca cccaccagca       180
     tttgcaccac cgcagcagca gccgtcgaat tcgattctcc gccctccgtt tcatcaacaa       240
     gtaccgcctc gattccagca gtttccgcag cctccaaccc cgcaacagca gcagcagtaa       300
     aacccatcat cgaacgaatt cgttggacaa tgttttcaat ttttccaaca gctccaacag       360
     caacagcaag cattctttca aacgatgttg tcttcgatgc accaccaaac agcgccaaat       420
     ccggagcaga tattggactc gcttgcaagt aatatacagg agtttcgata cgagccggat       480
     gcaaacgtca catttgcagg ttggtttgtg cgctacgagg atttgtttgc caaggatgct       540
     gttcgtttgg atgatgaggc gaaggtgcgg ttactcctcc gtaaaattgg accaatggaa       600
     cacgaacgct acaccagtta catccttccc aagcttccga aggacatcag cttttccgat       660
     accgtgatca agctaaaaag cttgtttggc acttcggaat ccgtactgag taggcgctat       720
     cggtgcttgc aagtcgccaa gcaagctacc gaggatttca aaacgtacgc atgcagagtc       780
     aacaaactgt gtgttgagtt tgaactcggg aaacttaccg aggaacagtt taagtgccta       840
     gtattcgtgt gtggtttaaa agcggagagc gatgcggaag ttcggactag attgctgagc       900
     aggatcgaag aaagaaccga catcaccttg gagcatatat cggatgagtg ccaacgtctc       960
     ctcagcatca aacacgacac agcaatgatt gaggcagggc aacattcagc agcagtgcaa      1020
     gcagtcaaga gcaagcatca cgtcgggaag cgtgcatctc gatacgaacg gcgttctcca      1080
     gtttcgggat tttcgtccgg gtcaagtaaa gccaccggaa caggaccagg ttcgccatgt      1140
     tggaactgtg gttccatgca ctactccaag gattgtccct tcaagaagca tcaatgtcgg      1200
     gagtgcagac aagtcggtca caaagacgga tactgctcta gcgcaaggaa ggcaagaagt      1260
     ccacgatctc cgaacaagcg attttctccg aggaagacgg aaaccaagag tgtcgtggtg      1320
     aagaacgtga agaagagaag aagatttgtg agtgcgctgg tgaacgatcg tcagattagt      1380
     cttcaactag atacggcatc ggacatcagc ataatctccg agaagacttg gcgtaggatc      1440
     ggtcgtccca cgtccagtcc agtgacggtc gaagcttcga cagcatcagg aaagccactg      1500
     aagttggagt tcgagtgtaa atgtgcgatt tccatcaatg gggtaaaacg tcaagtccgc      1560
     ttctacgtcg taaaacagca actcaatttg ctcggcttag atctcatcga tcaattcaat      1620
     ttctggccta tgccgatgga tcgcttctgc aatcatgtca gcagctcgcc cacagcagtc      1680
     ggcaccttaa agcaagcttt cccgacagtg ttcaacgatg ctccgggact ttgtacaaaa      1740
     gcaaaggtac acctcacgct gaaagaagga gcacagcctg tgttccgccg gaagagacca      1800
     gtagcgtacg caatgtacaa gaccgttgat gaagagttgg accgtttgga aaaggctgga      1860
     atcataacac cagtcgagca ctcggagtgg gcagctccga tagttgtcgt gaggaaggcg      1920
     agtggagcag tgaggatctg cggtgattat tcaactggct tgaacgacgc cctacagccg      1980
     caccagtatc ctcttccgct gccacaggac atcttcgtga aactggccaa ctgcaaggta      2040
     tttagccaaa tcgatctttc cgatgcattc ctacaggtcg aggtagagga agaatcccgc      2100
     gaaatgctga caatcaatac gcaccgggga ctctaccgct acaaccgact tcctccgggg      2160
     gtcaaggcag caccaggagc gtttcagcag ttagtagaca ccatgctagc tgggctgaag      2220
     tgcacgtcgg gctatctcga cgatgtgtta gtaggcggtg tggacgaaga agaccatcaa      2280
     cggaatctcg aaaatgtcct ccgtcgactt caagagtacg ggttcaccat caaagcggag      2340
     aagtgttcgt ttggccaaca gcaaatcaaa tacgttggtc accttattga tgagcacgga      2400
     ttacgcccgg atccggccaa aattgaagcg attcgcaaca tgccagcacc caccgacgtc      2460
     tcgggagtgc gttccttcct aggggcaatt aactattacg ggaaatttgt ccctagtatg      2520
     cgaacgctaa ggtaccctct tgacgagctc ctcaagcaag gaaagaagtt cgtctggtcg      2580
     tccgaatgtc agcaaacgtt cgagaatttc aagaaaatcc tgtcttccga cttgctcctc      2640
     acacactaca acccggagtt ggacatcatc gtgtcggcag atgcgtcttc catcggagtc      2700
     ggggccacaa taagccacaa gttccccgac ggctctatca aagtggtcca gcatgcgtcc      2760
     agagcgttaa cctcagctga gcaagcatac agtcagccag atcgcgaagg gctcgcgata      2820
     attttcgccg taaccaaatt ccataagatg gttttcggcc gaaaattcac cttacagacg      2880
     gatcacgccc cacttcttcg gatctttggg tcgaaaaagg gcattcccgt ctacacggcc      2940
     aatcgtttgc aacgctgggc gctacagttg ctgatgtacg atttcaagat cgtctacgtc      3000
     aacacggaca agttcggcaa cgcagatgtc ttgtcaaggt taattgaaca tcacgtgaag      3060
     ccggaagagg atttcgtggt ggctagcatt gtgctgaaga aggatgtgaa ggcgttagct      3120
     acaaattcaa tcgacgcgct tccactcaac ttcaaaatgg tccaggaagc gacacgttct      3180
     gatccagatc tcggaaaact ctaccgcttt gtccaagaag gttggccaca gtcaaagtcc      3240
     gccataacaa gccgtgagat caagcgtttc tacgatcgtc gagagtcctt atcaacaata      3300
     caaggctgca tcatgttcgg cgaacgtttg gtaattccat cgagctaccg gaagcggtgt      3360
     ctgcatcacc tccaccgagg acatccggga atgcagcgca tgaaggcgat agctcgaagc      3420
     tatgtctact ggccatcgtt agatgaggac atcgttgttt acgttggttc ctgccatcat      3480
     tgcgcagctg tagccaagag tcctccaaag tccgcaccac tgtcctggcc aaagtcaacg      3540
     tatccctggc agcgcgttca cgtggactac gccgggccga tagaaggtga atacttcttg      3600
     ctgagcgttg actcctattc aaagtgggtc gaaatagtca aaaccaagtc aaccacagct      3660
     accactacag tcagcatcct ccgcagtttg ttcgcccgtc ttggaatgcc ggagactctg      3720
     gtaagcgaca acggtccaca gttcgcatgc gctaagttcg ataaattctg cttggagaat      3780
     ggtgtcaacc acatcactac tgcaccgtat cacccacaat ccaacgggca agcagaaaga      3840
     tttgtggaca cctttaagcg atcggtaaag aaaatacgcg aggggaaagg agccattcag      3900
     gaagctttgg acattttcct aatgacttac cgagcttcac cgaatccagc cacacccgaa      3960
     ggaaaatcac catcagaagc aatgttcggt cgcaggattc gtatcggtct tgacctgctc      4020
     cgtccgccaa caactcctac tcttgagtcg agggatgaac atctccaaag atcattcaag      4080
     aaaggcgatt gtgtgtatgc gaaggtctac tcaaacaacc agtggagatg ggtgcctgga      4140
     gtggttttgg agccaattgg acgtgtcatg ttcaacgtgt gggtggaaga taagcgcatg      4200
     gttcggtctc atatcaatca gctccgaact cgtgtgacag acgacaagcc accaatatca      4260
     aaccatcgcc aaagctaccg ttccacatca agcgctatcg ccacatcgcc agtctcaaca      4320
     ccaccttgct acaacctcca agcctctatc atcaatgctt gggcaaccgt ctgagcaatc      4380
     cacgccgttg cagcccgaag cacctgcccg agtgtgggtg tcaccagaag cgtctacgtc      4440
     gtcatcgtcc tcgtctgggt taacatcatc ctccaatcca agctctgtaa tgtcttcgtc      4500
     atcggagttt ttatcagcca atgaaaacca tacagctgtt cagatacctc gtcgctcttc      4560
     tcgctctaga agaccgccga ttcggtttga cccctatcag ctgtattgag gagggaga        4618
//
ID   Gypsy-636_AA-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-636_;
KW   Gypsy-636_AA-I; Gypsy-636_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-261
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-261
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2139-2139 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 261 BP; 66 A; 56 C; 57 G; 82 T; 0 other;
     tgttggggac aaatggacat ccctaccaat gatccaccaa cactaccgct gagctcactg        60
     gtggcagttg tatctgtcac ctgtcgatgc tataccagca agaatgttta tgttcagtat       120
     gtttattatg aagtaccgcg tgtaacgtgt taatagtttg taaccgtttt aaataaagtt       180
     tttagttcgt tgtttgttac gtcgcgtgtt ttactcgctc acgagaatgt actcggtcac       240
     cgccaacgcg cgaacgtaaa a                                                 261
//
ID   Gypsy-637_AA-I repbase;    DNA;    INV; 4956 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-637_;
KW   Gypsy-637_AA-I; Gypsy-637_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4956
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4956
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (19-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4956 BP; 1526 A; 946 C; 1128 G; 1356 T; 0 other;
     gtggcgacga agatgggatc ggcagagaaa atcggtgaga aaattattaa atttcaataa        60
     attgatcgat attgtagttt tcagcaacgt cctgttggaa ttgaggttag aaaatggtaa       120
     acaaaaacca aaaagttgtg ataaacactg cgccgtattc tattatgctg aatgaacttg       180
     gtgttgaaat tgagtttaaa ttgtgagagc gactggtgag tcgatactgt tcctgatagc       240
     gattcataat caaggggctg gtgcacggca cagcatagtt cttcgagaac gattcaagta       300
     aaagcggctg gtgcactgca cagcgcagct cctcgagagc gcttggtaca aatatggcta       360
     gtgcacagca cagcgtagtt cctcgagaac gatgtacgta aacatggctg gtgcactgca       420
     cagcatagtt ccaagagaac gattactctg aaagcggctg gtgcattgca cagcgcagct       480
     cctcgagagc gttaaattag ctggtgcaca gcacagcgta gttcttcgag aacgatacat       540
     tttaacgtgg ctagtgtaca acacttcgca gctcttcgag agcgtttcat ccaaaagtga       600
     ttaatgcatc acattattca gttcttcgag aacgttttaa ctaaagacaa ttattaattg       660
     gatgaataat tatcgttgca ggaagttcat ttgcttattc gggaagtgtc tcgaaaatca       720
     aaaggttgaa caacctaatc cggattatcc agtttgtagt tgttcatagc gtacgtatac       780
     gtatactttt ctgaatacat gagtgtatga aattgcaatt atattatggt gttcttttca       840
     gtgaaatgga taagtgggat attggtccat tcaaatacaa gcttatgccg cacaatgaag       900
     tgcgagatga atggattcgt tataagcggc agtttgaata ccttgcactt gcaaatggtg       960
     tgaccaacaa aacacgactg aagcatattt ttctggcccg cgcaggacca gacgttcagg      1020
     atgtttttag tacccttccg ggtgcggatg tggaagaaag attgggcgtc gatcctttca      1080
     aggtaatgtt atgcataagt gttttggtgt ttgatgagct tactatataa aacaaaaatc      1140
     ttaaaggttg ctattgcaaa gttggacgag tactttatcc ctaaacaaca tgatgcgtac      1200
     cagcgatttt tgttctggtc gatgactaag aaggaaaatg atgagcctct tgacaagttc      1260
     atcctgcgtg ctacagagct ggctagcaaa tgcaacttcg gaacaaccaa acaagaatcc      1320
     caggatatca gtgttattga caaagtcatt caattagcac ctcctgattt gcgtgagaag      1380
     ttgttacaac gagagaactt ggcgttggat gatgtcatga aattggttaa ctctcatgaa      1440
     tccatcaaat ttcaagcaag ccaaatcgtt tccaaagcca tggatcaacc ttcaacgtct      1500
     ggaatgatga atcgagtcca gaatacacca aaagattcat ctctaagatg tttcagatgt      1560
     ggtcgtaaag gacacttggc aaacgataaa gtatgcccag ctagatcaaa agtttgcgac      1620
     cgatgcggaa aaacaggtca ttttgctagc tgctgccgta caccgaatgt ttcccagaaa      1680
     cgtaaacgtg agaatgacga acaacgtaaa agcaaccggt ccaaatacca ggacgttaga      1740
     attattgcga aggaggagaa gaaaggtagc gcttccggta aattttcaag tttcattttt      1800
     tcaattggag agggagacga atttctatgg atcactattg gtggtgtgtt ggttcaagtt      1860
     ttgatcgact caggtagcca aaagaatatt ttagacgatg ttacctggaa gaatatgaca      1920
     gctcaaggag cacgagtcaa gaatcttcga acatattctg atcaaacttt tagagcatat      1980
     ggtcgatctg caactcctct agtggttcaa caagtattcg agagtaggat tgaaatcaat      2040
     gggagtgatc gacaaataac tgctgatgca actttctatg tgattgaagg tggttcgcaa      2100
     cctcttctag gcaaaatcac agctacacaa ttaggggtgc tgacattagg actgccaagc      2160
     acacagtccc cagaagtcta tcgtttatgt tcggagcaaa agcacccatt tcccaaaatt      2220
     aagggtatta agctaaaaat accaattgat actaccgtta ctccagttac ccaacatgct      2280
     cgtcgtcctc cactggctct tttaaataga attgaagaca agcttgattc tctgttggtg      2340
     gcagacataa ttgagccagt gaaggagttt agtcagtgga tttcaccact ggtcacaatt      2400
     gtcaaagaca ctggagattt gcgattatgt gtggatatga ggcgtgctaa cttggccata      2460
     aaacgagaag cacacttgat gcccaccttt gaagattttt tgcctcgatt aaggaatgct      2520
     cgagttttca gtaggctaga tatcaaagat gcctttcacc aggtagaact tcatgagtct      2580
     tctaggcata taacgacatt tatcacgcat aaaggagtgt ttcgatacaa acggctaatg      2640
     tttggcatct catgtgcccc agaaatgttc cagaaagttc tggagcagat tctctcaaat      2700
     tgcgaaaatg ttgtgagcta catagatgat gtattaatat ttggggatac cgtagaggaa      2760
     cacgatcgtg ctttgagaaa ggtgctggat acgctcaaag agatgaatat tcttttgaat      2820
     catgctaagt gcgtgttcag agtcactgag ctggagttcc taggacacca tctatcagct      2880
     gaaggagtac ggccgtcgga ggataaattg actgccctta aatctttccg agcaccccag      2940
     tctccagagg aattacggag ttttttaggc cttgtcacat atgtcggacg atttctccct      3000
     aacctttcga ctgtcagttc acctttaaga gagttaaccc acaaagaaat tcctttcaaa      3060
     tggcagccaa tacatgacaa agcatttaag gatttgaaat caatgatagc agatattaaa      3120
     acattagcct atttcgataa tgcgctgcgt acacgagtca ttgcagatgc atctcctgtt      3180
     ggccttggag ctgttctgct gcagttcgaa caggcttcaa atgacactaa tcctcgtatt      3240
     atatgctatg caagtaaaag cttaagttcc acagaaaaac gctattgcca aacagagaaa      3300
     gaggctctcg cgttggtttg ggctgtagaa cggttttctg tatatcttat aggcaggaaa      3360
     tttgaattag agacggacca taagccgttg gaagccatat ttgcaccaac atctagacca      3420
     tgtgcgcgta ttgaaaggtg ggtactaagg cttcaatcct tcaccttcga agtccgttac      3480
     cgcaaaggtt caagtaacat agcggatccg ttttctcgtc tcgcaaccgt aactacctcc      3540
     gatgaatttg atggtgataa tagatttctt attctggcta tcatggagtc agcggctatc      3600
     gatacagagg agttgaaaca agcatctagg caagacgaag agtttgctat tgttaaggaa      3660
     tgcctacaaa atggtacatg gaggaataaa gatgtcaaat catatgaaac agttcaagat      3720
     gaattgggct tcgtaggaga catgctagta cgaggaaata agctggtcat acctaaaatt      3780
     cttcgaagca gaatgttgtc tctggctcat gaaggacatc caggagaaag tgttatgaaa      3840
     cgaagacttc gtgaccgtgt ttggtggcct ggaatggaca gagaggttag cttacatgtt      3900
     gcagcatgtc agggatgtcg tttggtgtct cttcccaata aacccgagcc aatgcaccgt      3960
     agagaactac cagctggacc atggattgat attgcattgg acttccttgg acctttaccg      4020
     acgggcgagt atttgctggt aataatagac tactatagtc gctacaagga agtagagatc      4080
     atgagacata ttacggctga tgagactatt aatcgattgc ataaaatttt cacaaggctt      4140
     ggttttccag tcactgtgac gttggacaat gcaagacagt ttgttagcac atcttttgaa      4200
     tcctactgta aacgtaatgg aatcagtctt aatttttcaa ccccttattg gccacaagaa      4260
     aacgggctcg tagagcgaca aaatcgttca ttgctcaaac gtcttcaaat aagccattcg      4320
     ttaggtcgtg actggaaaaa tgatcttcag gattacttgc ttatgtatta cacatcaccg      4380
     cactccgtca caggaaagac gcctactgaa ctttgttacg gaaggactat tagatctaaa      4440
     ataccatcct tgaaggatct tgaaactgcg ccatctagat ctgaagtaat agatagagat      4500
     cagcaatcga aaaaaaaggg tgaggagagt gaaaatatca aacggggagc caaagattct      4560
     gacttgaaag ttggtgatac agttttgatg aagaatttag ttccagcaaa caagttgacg      4620
     cctaacttta gtccaagtga gtgtttagta ttgggcaaag atggatcacg agtgactgta      4680
     caagacaaag agtcacacaa gacataccaa cgaaatgtgg ttcatcttaa gaaagttata      4740
     ccccaaacag gagactccat agatactaat tcgtctattc ttcaagattc agtgcctgaa      4800
     caattaccag tcgctattcc tgttgataat gaacacgtga gaagttctga atcttgcaga      4860
     gtacgacgac aagtgaagca acccacgaaa tttaaggatt atgtcatcgg tgatgttact      4920
     tcggaataga ctggcgttct catagaaaaa acgaga                                4956
//
ID   Gypsy-637_AA-LTR repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.04, Created)
DT   19-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-637_;
KW   Gypsy-637_AA-I; Gypsy-637_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-262
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-262
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2140-2140 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 262 BP; 98 A; 41 C; 58 G; 65 T; 0 other;
     tgtggtaccg taactcttaa ggactgaaat gtaaatatac catacctcat tgataagact        60
     cattgaacta atactttgat gtacctttag gtgaatacgt gctgccagta ggaagaatgg       120
     gggatgggag aagaagaatt agaagatcga cgtttagaaa agtgatgcgt acggtgtcgt       180
     ggcgaagaga ttataaatcc aaataaactt acaaataaca gaatattaac agtacaatag       240
     ttagtgaacc cgaaacccca ca                                                262
//
ID   Gypsy-638_AA-I repbase;    DNA;    INV; 8228 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-638_;
KW   Gypsy-638_AA-I; Gypsy-638_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8228
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8228
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(764..1705,1572..2084)
FT                 /product="Gypsy-638_AA-I_1p"
FT                 /translation="QQEICNRSGGFLYFFPFCYCLTTNKKLMSFRRIFQLR
FT                 TREVVVGGEDNSSFSNLHSSNQSDSESDLPSLPNSDSDLHSSLSSLAETMP
FT                 FDPKEAREDIPELLGKSNFQQFMAICQDFKDSLGDADDAVLVKIIKRKLKN
FT                 IEAFTLCRNTTTFDEIKSILSNKFGEKAPLSVLISDMVNLRQKENEDAKTY
FT                 GDRALLLQEKIEVVSEDLLSLSTLTNKDVTPVTYIYSRVILEYFINGIKQC
FT                 DVRNIVKSNNFTELNKAAEYAHKLESNLNSNEILSRRNNVPYNNNFGSKYN
FT                 NQNFFKSKPNHYNNDFQRNFFKIQTKFYPDGTMSHITIISVQNITIKIFSN
FT                 LNQIITITIFREIFSNNTGNRNFPNNTGKRNFFNNTGNRNFEHSKQHFSNS
FT                 NFGQTVNRNSQRQGDQQNNVNIKREIKTEPMHNFRARPLKCNFCGRIGHLE
FT                 QDCHFKQRHNINVLESKNWKAPVIKHPDREGSELMRTLQM"
FT   CDS           join(2162..5830,5830..7776)
FT                 /product="Gypsy-638_AA-I_2p"
FT                 /translation="MNFLLDPGAEVSVMKIDDFMINTIRHDFIEISGVTSE
FT                 AVKTLGKCSLTFDFKNFSREFEINVVRHDFPIPCNGILGSDFFNNYPCTID
FT                 YRDNCFKIFKQPNRQFINAMKAKNIVRIPPRTELVKKVFVNSNHDLICFPK
FT                 QFYDKPIYVGGSIISPVNYIAYVPIINATHEEVEIDLNDIQIEQLENFHVM
FT                 SLKTVEKTRLQNILSCIDLDHLNCEEKSSIIDVIEMYQDLFYLDGDTLDCT
FT                 DATTHRISVNNEKPIFTRQYRLPNAQKDVVNKEVNKMIHNGTIKESKSPWN
FT                 SPLLVVPKKSSKDGQKKWRVVVDFRKLNDVTISDAYPLPLITDILDQLGKA
FT                 RYFSNLDLASGFHQIKMDPQDAAKTAFSTQFGHFEYVKMPFGLKNAPATFQ
FT                 RLMNTVLSGLQGIKCFIYMDDVVVYGNSLIEHNKKLCEVFECLKKFNLKLQ
FT                 TDKCNFLKKELLYLGHRVTSEGILPDESKIHAIKHFPIPQNQKQIKMFLGI
FT                 LSYYRKFIPNLANLANPINKLLRKNQRFVWSQNCQRSFDELKSLLTSSPIL
FT                 QYPDFSKKFVITTDASNVAIGAVLTNEGNNLPIAYASRILNQAERHYSTVE
FT                 KELLSIVWAIKHFRPYVYGNEFLVCSDHKPLIYLFNITNSSDRLMRWRIQL
FT                 EEYDFKVTYVPGKGNVVADALSRIELCKLDTADQITSQISDEIKTHKQKMS
FT                 NRVHVITRNQAKSTNRNLDNSIVNGIAEDYSCFKLLKNPNKNKNSNLGRPI
FT                 SNYVSIYIVPRILDRKLIYEFDKNDFYSADCNDYEYISKIDKHFVISKNKH
FT                 EDKICMHNLYKNLLIAKENLKAISNKSIDFHFVLSSRDEILWPELRDFTAH
FT                 IFSQVNCKLYFSNNLAIRVSTKEEIQTILKEFHNSPLGGHEGVERTIKRIS
FT                 EKYTWKTIRQDVKNFVKKCEDCQKNKILPKNKIPLKITSTSSKPFEKIFLD
FT                 IVGPLPTTKNGNNYILTIQDDLTKQFIAKPIPEATAEITCKAFLEVAICTY
FT                 GVPKELVTDRGTNFISKLFQTLCKLLKVQQIQTTAYHPQSNGALERCHRTM
FT                 KEYIRSFVCTQLNDWDEYIPFFAFTYNTTVHSSTGFTPHELMFGHKAELPL
FT                 SICTAYNGSDTYFSYIEDLRQKLASIHKIAKENLLGSKEKRKENYDKNSKN
FT                 WVPLWGEKVLLENVATGAGRKLQGLYNGPHEVVAINSPETSTILIKGSNRK
FT                 VTVHNDRLKSYFEVSHFFYIFFLSLICVYCRMLYVFVFALTICSLEASLPV
FT                 ENVPMYDHGILYERLQDVRLELGSWTLETSYSLHDMEVEINVLENMTNTLM
FT                 KSCEQLNSDFGLDCNRLTKNIRILLTELLPIRAIINSTCTTEIANALNIKR
FT                 AKRGIIDGLGELEKMLFGTMSNEDRQRIDKDLAHLLDNEDQLSRQVEKQTV
FT                 AIDSIFDLTNKSISTLENEVESFSKVIEFYNKKYQEEKTKSIVRNQIFELL
FT                 NEIEILFEHAFRKRDVFYTLMMNEKTNLSPAVYNPAKFLKDLMTIRGILPP
FT                 SFEFVVPLSFENIMQLYPVSTMKSTVVGCRIKVSIQVPITNKLIYEAYKGT
FT                 SIPLLRNGKLFITPIQNDIVLKAFNSDIGMTMTYKEFKECKSLQNFNLCPS
FT                 THSLENLTISEECNARTFLNNSESVCIPQPLNLQHQMWIQLIDHNSWIYAV
FT                 PNITDLLIFYNNKSFTMEINMVGKLKLTKPCFIKSNNVLLHYYPTVHSSID
FT                 SNELKINFRFSPKEAKFIDTKVPDTIENSIITHTNGKDLFNEINTLKTMNA
FT                 GKIQLMNIELEQHSFSIWKTIFILIVLAIFLWLSFKLFKYLKLKFKGEGNA
FT                 PVAPPENQPLQVIFSNAPTQEITDSEEVPSTDRREPKIKKNRLMLGKTTF"
XX
SQ   Sequence 8228 BP; 3085 A; 1309 C; 1383 G; 2451 T; 0 other;
     gtggtggcag cggttaacgg aacattcata gatttactta agatcggttc ggttcctgaa        60
     gtcctcttcc ccagttttat acattgtgtg tacggtgtta tcgtttttta aattcgctca       120
     atcgcggggt ggtgtagaaa atttcccaaa acagaacttg gtgacggacc caattcgacc       180
     ccagaatccg gaatcaaaac ccgggaccac atatcgggaa cgacgaaagc attccccaag       240
     aatcgcaaac agcaaaagta aaagtgcacc gggggagctc tgggcaagtg tgtggcgagt       300
     gatcttttga ctctcctttt tcgcggtggc tggttccacc actcaaggaa gaaacaggga       360
     gttcatcgaa atttagagtc gaatttttcg gtttacgttt ggtgtgtgtg aacgaaaaca       420
     gtgcaaaaat atacggccaa gaagccaaat tccaactcaa tcaacaggat ttccacttct       480
     attcgaagtc gagaaaattg tttgtgtgac ttgtggtggt agtgagtgaa tgaaacaagg       540
     aagttatcct ctggaaaagg aatacaaaaa aaacggtgcg tgtcagttca aggatagtaa       600
     ttacataatt ttccggataa gctataagga gaaacagcag cagcatcaag acaacaacca       660
     gcaagcaacg ttaacattaa ggtaggaaca tttagtaaat tgcacaggcc tcaaaaaaaa       720
     aaaaaaaaaa aatatatata tatatataca tttatatttt taacagcaag aaatatgtaa       780
     tcgatctggt ggatttctat actttttccc tttttgttat tgtctcacaa caaacaaaaa       840
     gctaatgagc tttagaagaa tatttcaact tagaacaagg gaagttgtag taggtggcga       900
     agataatagt agtttttcaa atttacattc atcgaatcaa agtgattcag aatctgattt       960
     accatcatta ccaaattctg attcagattt acattcctca ttatcttcac tagcggaaac      1020
     aatgcctttc gatcctaaag aagctcgaga ggatatccct gaattgcttg gaaaaagtaa      1080
     tttccaacaa tttatggcta tctgccaaga ttttaaagat tcgttaggcg acgcagatga      1140
     tgctgtatta gtaaaaatta ttaagcgaaa gctcaaaaac atcgaagctt tcacactctg      1200
     tcgaaacact actactttcg acgagataaa atcaatttta tcaaataaat ttggagagaa      1260
     agctccactg agcgttctca tatcagatat ggttaattta aggcaaaaag aaaatgaaga      1320
     cgctaaaacg tacggtgata gagccttact tctccaagaa aaaatagagg tcgtttcgga      1380
     agatcttttg agtttatcga cactaactaa taaagatgta acaccagtta catatattta      1440
     ttcccgtgtc atacttgaat attttatcaa tggtattaaa caatgtgatg ttagaaacat      1500
     agtaaaatca aacaatttta cagaattgaa caaggcagct gagtatgccc acaaacttga      1560
     gtcaaattta aattcaaacg aaattttatc cagacggaac aatgtcccat ataacaataa      1620
     tttcggttca aaatataaca atcaaaattt tttcaaatct aaaccaaatc attacaataa      1680
     cgattttcag agaaattttt tcaaataata ccggaaatag aaatttccca aataatactg      1740
     gaaagagaaa cttcttcaat aatactggaa atagaaactt cgaacattca aaacaacatt      1800
     tttcaaacag caatttcggt cagactgtga atagaaattc tcaacgacaa ggtgaccaac      1860
     aaaataatgt taatattaaa agagaaatta aaacagaacc tatgcataat tttagagcaa      1920
     ggccattaaa atgtaatttt tgtggtagga ttggacattt agaacaagac tgtcatttta      1980
     aacagcggca taatattaat gtacttgaat caaaaaactg gaaagctcca gtaataaaac      2040
     atccagatcg ggagggctcg gaactaatga gaactcttca gatgtaataa ttccatttgt      2100
     gcatgttact aacacgaaca gagccattgt ctctattgaa atatgccaaa cacgtgaacc      2160
     tatgaatttt ttattggatc cgggagctga agttagcgtt atgaaaattg atgatttcat      2220
     gataaatact atccgtcatg atttcatcga aatatcaggt gttacttcag aagccgtcaa      2280
     aactcttggg aaatgtagtt taactttcga ctttaaaaat ttttctagag aatttgaaat      2340
     aaacgttgta agacatgatt ttcctattcc ttgtaatggt attcttggaa gtgatttctt      2400
     taataattat ccttgtacca ttgactatag ggataattgt ttcaaaattt ttaagcaacc      2460
     taatcgtcaa tttattaatg ctatgaaagc aaagaatata gttagaatac ctccacgaac      2520
     agaacttgtg aagaaagtgt ttgtcaattc aaatcatgac ctaatatgtt ttccaaaaca      2580
     attttacgac aagcccattt atgtaggtgg tagcattata agtccagtaa attacattgc      2640
     ttatgtgcct atcattaatg ccacgcatga agaggtggaa attgatttaa atgacattca      2700
     gatagaacag ttggaaaatt tccatgttat gtctttaaaa actgtcgaaa aaactagatt      2760
     acaaaacata ttatcgtgta tcgatctgga tcatttaaat tgtgaggaaa agtcatcgat      2820
     cattgatgta attgaaatgt atcaagattt attttattta gatggcgaca ctttagattg      2880
     cacagacgcc acaacacaca gaatatctgt aaacaacgaa aaacctattt tcacaagaca      2940
     atatagatta cctaatgctc agaaagatgt tgtcaacaaa gaggttaata aaatgattca      3000
     caatggaact atcaaggaaa gtaaatctcc gtggaattca cctttgctag tagttccaaa      3060
     gaaatcttct aaggatggtc agaagaaatg gcgcgtagtc gttgattttc gaaagctaaa      3120
     tgatgtcact attagtgacg catatccttt accattaata actgacatcc tagaccaatt      3180
     aggaaaagct agatattttt cgaatctaga tctagctagt gggttccacc aaattaaaat      3240
     ggatccacaa gatgccgcta aaacagcatt ttctactcaa tttgggcatt tcgaatatgt      3300
     gaagatgcca tttggtttga aaaatgctcc ggctactttt caacgattaa tgaatacggt      3360
     gttaagtgga ttgcagggta tcaaatgttt tatatacatg gacgatgtag ttgtgtatgg      3420
     aaacagtttg atagaacata ataaaaaatt gtgtgaagtt tttgagtgtt tgaaaaaatt      3480
     taatttgaaa cttcaaaccg ataaatgtaa ttttttgaaa aaagaacttc tctatctagg      3540
     acatagagta acctctgaag gaattttgcc cgatgaatcc aaaattcatg caattaaaca      3600
     ttttccaata ccacaaaatc aaaaacaaat aaagatgttt ttaggaatac tgagttatta      3660
     ccgaaaattt attccaaatc tagcaaactt agctaatccg atcaataaat tattaagaaa      3720
     aaatcaaaga tttgtatgga gtcaaaactg tcaacgatct ttcgatgagt tgaaatcgtt      3780
     gttgacgagt tctcccatat tacaatatcc tgattttagt aaaaaattcg tcataacaac      3840
     tgacgcaagt aatgttgcta taggagcggt tttaacgaat gaaggtaata atttacccat      3900
     agcatatgcc agcagaattt tgaaccaggc tgaaagacat tactccactg tagagaaaga      3960
     acttctctct attgtctggg ctatcaaaca ttttagacca tatgtctatg gcaacgaatt      4020
     tttagtatgc tcggatcata agcctctaat ttatttattt aacatcacga attcgtcaga      4080
     ccgattaatg cgatggcgca ttcaattgga agaatatgat tttaaggtaa cttatgttcc      4140
     tggaaaagga aatgtggtcg cagacgcatt aagccggatt gaattatgta aattagacac      4200
     tgcagaccaa ataacatcac aaataagtga tgaaatcaaa acgcacaaac aaaaaatgtc      4260
     aaatcgtgta cacgttatta caagaaacca agcgaaaagc accaatcgaa atttggataa      4320
     tagcattgtg aacggaatag ccgaggatta ttcgtgtttc aagctactaa agaatccaaa      4380
     taaaaataaa aactctaatt taggtcgacc aatatcaaac tatgtatcga tatacattgt      4440
     gccaagaatc ttggacagaa aattaatata tgaattcgat aaaaatgatt tctacagcgc      4500
     agactgtaat gattatgaat atatttcaaa aattgacaaa catttcgtca taagcaaaaa      4560
     taagcatgaa gataaaatat gcatgcataa tctttacaag aatttattaa tcgcaaaaga      4620
     aaatttgaaa gcaatttcca acaaatctat cgatttccat tttgttttgt catcgagaga      4680
     cgaaatttta tggccagagt tgagagattt tactgctcat atattttctc aagtgaattg      4740
     caaactatac ttttcaaata atcttgcaat tcgcgtttct acaaaagaag aaattcaaac      4800
     cattctgaaa gaattccaca acagcccact aggcggtcac gaaggagttg aaaggacaat      4860
     caaaagaatt tcagaaaaat atacgtggaa aacgatacgc caagatgtca aaaattttgt      4920
     taaaaaatgt gaggattgtc agaagaataa aattttacca aaaaacaaaa taccattaaa      4980
     aataacatcc acatcgtcaa aacctttcga aaaaattttc cttgatatcg ttggtccttt      5040
     gcctactact aaaaatggga acaattatat tttgacgata caagatgatt taacaaaaca      5100
     atttatagcc aaaccaattc ccgaagctac ggctgaaata acatgtaaag catttttaga      5160
     agtggcaatc tgtacgtacg gtgtgccaaa ggaattagta acagaccggg gaacaaattt      5220
     cattagtaaa ctgttccaaa cactttgtaa gttattgaaa gttcaacaaa ttcaaactac      5280
     agcttatcat cctcaaagta acggtgcttt ggagagatgc cataggacaa tgaaagaata      5340
     cattcgatct tttgtttgca ctcaattgaa tgattgggat gaatacatac cattctttgc      5400
     atttacctac aacacaacgg ttcattcttc aaccggtttt actcctcacg agttaatgtt      5460
     tgggcataag gcagaactgc ccctttctat atgtacagca tacaacggat cagacacgta      5520
     tttttcgtat attgaagatc ttagacaaaa attagcatcc attcataaaa tcgcaaaaga      5580
     aaatttactg ggttcaaaag aaaagaggaa agaaaattac gataaaaatt ctaaaaattg      5640
     ggttccttta tggggagaaa aggttcttct cgaaaatgtt gcgacaggtg ctggtagaaa      5700
     gttacaaggc ttgtataatg gtccacatga agttgttgcc ataaacagcc ctgaaacaag      5760
     taccatttta attaaaggtt cgaacagaaa agtaactgtc cataacgatc gattaaaaag      5820
     ttactttgag taagtcattt tttttacatt ttttttcttt ctctcatttg tgtttattgc      5880
     agaatgttgt acgtatttgt cttcgcatta actatttgct cattagaagc aagccttcca      5940
     gtggagaacg taccgatgta tgatcatggc atcttatatg agcggcttca agatgttcga      6000
     ttggaactgg gatcatggac cctggaaaca tcatacagct tgcatgacat ggaagtagaa      6060
     attaatgtat tagaaaatat gactaacact ttgatgaaat cctgcgaaca attaaattcc      6120
     gattttggac ttgattgtaa caggcttaca aaaaacataa gaattctttt aaccgaattg      6180
     ctccctatta gagcaattat taactctaca tgtacaaccg aaatagcaaa cgcgttgaat      6240
     atcaagagag caaaaagagg gattatcgac gggcttggag agttggaaaa aatgcttttc      6300
     ggcactatga gtaatgagga caggcaacgc attgataaag accttgccca tttacttgat      6360
     aacgaagatc aattatctcg acaagtagaa aagcagactg tagcaatcga ttcaattttt      6420
     gatttaacta acaaatccat aagtacgttg gaaaatgagg ttgagtcctt ttcaaaagtc      6480
     attgaatttt ataataaaaa gtatcaggag gaaaaaacaa aatctattgt aagaaatcag      6540
     atttttgaac ttctgaacga aattgaaatt ctttttgaac atgcgttcag aaagagggat      6600
     gtgttttata ctttaatgat gaatgaaaaa actaatcttt cgccagctgt gtataatcca      6660
     gcaaaatttt taaaagatct aatgacaatt cgaggcattt taccgccatc ttttgaattt      6720
     gtcgtgcctt tatcatttga gaatattatg caattgtatc cagtttctac aatgaaatca      6780
     actgttgttg gttgtagaat taaagtgagt attcaagtgc ctatcacaaa taagcttata      6840
     tatgaagctt ataagggtac aagtataccg cttctaagaa atgggaagtt atttataaca      6900
     cccatacaga atgacatagt tttaaaagca tttaattctg acattggtat gacaatgact      6960
     tataaagaat ttaaagaatg taaatcactt caaaatttta atctctgtcc ctcaacgcat      7020
     agcctagaaa atttgacaat ttctgaagaa tgtaatgcga gaacattcct taataattcg      7080
     gaatctgtct gcattccaca acctcttaat ctacaacatc aaatgtggat tcagttaatt      7140
     gatcataatt catggattta tgcagtgcca aatataacgg atttgttaat attttataac      7200
     aataaatcat ttactatgga aattaacatg gttggaaaat taaaattaac caaaccatgc      7260
     tttataaaat caaacaatgt tttgctacat tattatccta cagttcactc ttccattgac      7320
     tcgaacgaat taaaaataaa ttttagattt tcacctaagg aagcaaaatt cattgatact      7380
     aaagtacctg atactatcga aaatagtatc ataacacata ctaatggcaa agatttattt      7440
     aacgaaataa atactttgaa aacaatgaat gctgggaaaa ttcaactaat gaatattgaa      7500
     ctggaacaac attcgttctc aatttggaaa actattttta tattgatcgt tcttgctata      7560
     tttctctggt taagtttcaa attgttcaag tatttgaaac ttaaatttaa gggggaaggg      7620
     aatgctccag tagcaccacc tgaaaaccaa ccccttcaag taattttttc aaacgctcca      7680
     acgcaggaaa taaccgattc cgaagaagta ccatccaccg atcgaagaga acccaagata      7740
     aagaaaaata ggttaatgct agggaaaact acattttaga atttaatgtc atctacaaaa      7800
     aaaaaaaaaa aaaaaaataa agaatatgtg tttgtaagaa gcatgtgtcc aaaattaaga      7860
     aaaaaaaaga aaaatttgtt gatgatgtga aaacgataat aattatacga cgatgataaa      7920
     taaactataa taatcaaata taaacaatta aagataaaac ttgaaccatc attgtaacta      7980
     aaaattgtaa taataataat agtaataaag aaaaatataa ggagatacgg atgtaataaa      8040
     attatttaaa gcacaattaa ggttgaatat atcacccaga ataatgttaa aatttaaatg      8100
     tttataagaa atataaggtt caataaataa agacaataat aatttaaaaa acctttttat      8160
     ataaaaattt taccagagct cagaaaattt ttataaacaa acgttttttt tttttgagag      8220
     gatagtaa                                                               8228
//
ID   Gypsy-638_AA-LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-638_;
KW   Gypsy-638_AA-I; Gypsy-638_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-298
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-298
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2141-2141 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 298 BP; 103 A; 59 C; 63 G; 73 T; 0 other;
     tgtgatgtaa tgccatcaca tgttccgccc ctcaggcaaa atgaacaaag aagtgtcatt        60
     atcagcagtg catacaatct aaataaacca gattgtatgc tttacataag acggcaaggg       120
     cgaaggtcga cgaaaagcat gagcatcgat agttgtttgt tcgcatttct tatcatgatc       180
     gcccttagcg acactagtag ttgaacgcag gtataaaata ggaaatcgaa tcgaaataaa       240
     gcggagatgt ccagtaacta acgagaagtt gatacctcta gatccgaaac accttata         298
//
ID   Gypsy-639_AA-I repbase;    DNA;    INV; 5735 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-639_;
KW   Gypsy-639_AA-I; Gypsy-639_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5735
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5735
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           771..2036
FT                 /product="Gypsy-639_AA-I_1p"
FT                 /translation="MPSETYILNLDKLLRIEQNIRKSINKNTKPDTLQSNV
FT                 ETARLLFQEIEKELIERQDEIADTQLFTYIKKARNAIGYIEQTCKSKIVKI
FT                 SIPHHQNHTNMAFDARLAASILLPFDGDSEKLSSFKDSVKFLKTATEAANH
FT                 PTLKLFIITRISGKARDALPTDIDDKSIDEIIEQVSKSCESKITSEQVLAK
FT                 LKTIKRGTAKQQYCEEVESLCSQLSRAYIKEGIPQAIAKKIATKAGVETLI
FT                 KTVSTENAKIVLQAGSFPTIEQAIQKLNELPDNTESNDVTRVFNINTNQKR
FT                 FQNFNQGHQRNWRRGANNNNNNFTRRGPHAYNQRFHYAPRFDNRPHNGNHR
FT                 GRNDYRGQPPQGRQSHRVYYADAQNAVLAPNPTYLQQPQVQSQGHPIWNMS
FT                 PQQPQQHVNNQTQNQNFLGTMGQYTQSM"
FT   CDS           1865..5650
FT                 /product="Gypsy-639_AA-I_2p"
FT                 /translation="RAKCRTSTKSNILATTSSSKSRPSDLEHEPSATAATC
FT                 KQSNTESEFFRNNGSIYSINVAASNFVILTISVSNQLCSFLVDSGADISLL
FT                 KLKVLNRGIPFNPNNACVLRGITPGESKSLGTINCLTYIQDTVLNSTFHLI
FT                 NDDFPIPTDGILGRDFLTSYRCEINYDTWILTANVNNNRIEIPIQTNLNGS
FT                 TWIPARSEVFRVINNLNTDKDVVLTSSEIQPGVFCANAIVNRNAPYTKIIN
FT                 TNEYPVHISNSNFKFIDLEKFYKANIYKSNDSNRLEKLQAELKLDGTPSFV
FT                 RDRLKNLCNEYNDIFSLKDDLLSCNNFYKQTINVTDKAPVYIKNYRNAQCH
FT                 KEEICRQVDNLIENDIIEPSVSNYNSPILLVPKKSSDGDKKWRLVVDFRQL
FT                 NKKLLADKFPLPRIDDILDQLGRAKYFSTLDLMSGFHQIEIEKNSREFTAF
FT                 SLQERGHFQYKRLPFGLNISPNSFQRMMSIALSGLSPECAFLYIDDVIVVG
FT                 CSVEHHLTNLRKVFECFRRRNLKVNPSKCNFFKSEVTFLGHKITDKGILPD
FT                 SSKYDVIKNYPTPQNSDQVRSFVAMCNYYRRFIPHFASICHCLNKLLRKNV
FT                 TFDWTDECHKAFEKLKNTLLSPRILQYPDFQKPFILTTDASDFACGAVLSQ
FT                 IHENNDLPVSFASRAFTKGEANKHIIEKELAAIHWAIMHYRPYLLGRKFLV
FT                 RTDHRPLVYLFGMKNPSSKLTRMRIDLEEFDFEVEYVPGKSNVVADALSRI
FT                 NLTSEKLKSMNILQVQTRSMQRKPSPANTNIQTNSPKPDQLRVYQAVNNEQ
FT                 IYKLKKLQFTLQKHRSEPRMAINILEKNYKKGLTLALDLTISRKELPNVFK
FT                 LIENGTRLQHRTEQSFESKSIAISTSDAIFHYISINDFKSIGNQTLKDITI
FT                 IIYEPPKTITNPDEIHEILRHYHDTPIGGHVGINRLYKKLKNLYYWPNMKY
FT                 IVTKFIKSCETCKKNKHLTGVQEKMVKTTTPTKVFDVVAIDTIGPFTLSNK
FT                 GNRYAVTIQCDLSKYVIAIPIPDKSANTIARAVVEGCILIYGPMKAIRTDQ
FT                 GTEYKGIFDSVCKLLNINHTLATAYHPRTLGALERNHRCLNEYLRSFVNNL
FT                 KNNWDEWISYYCFSYNTTPNTNHNYSPFEIVFGKTVNSFEQMNTNQIDPIY
FT                 NYDSYVNELKFKLQSIHHHIFQQIEKVKETRTHQANQTIVPTPLRVGDKVY
FT                 LKLEGRKKLDIVQDGPHIVIEIDNVNATIQHEQSANIVKTHKTRLIKQNQI
FT                 M"
XX
SQ   Sequence 5735 BP; 2183 A; 1124 C; 1005 G; 1423 T; 0 other;
     tggcataccg tgacagtgag tgataacgaa cagtagaaga aacaacagtg ataacaaact        60
     ttagaagcat cacagtgttg tagaagtgct agaaaatcag cgccagaaag ccagaataat       120
     gggttggttc acatcggaca attttgtgac caacaatgtc gcgatcccga caacagaact       180
     aagaatagcc gtcggtgcgg tagttatggt ggtggcaatt gtagtgattt acctactact       240
     cagagtgtac aataagtacc agaaaaaagg ggtgcaaaac tcgatacgtc gagaaataca       300
     attgaacaac gtaagaacgg acaatacagt cgcaaacaat taaagtatct tactatcgaa       360
     cgaccaaatc aaaaacaatt atgtgcaagc aacgttgcga aaaagttagt cgacaccaat       420
     aatcggaaga agacagtgta cagtgctgat ttccaaggct tcgaccttga tgaccaattt       480
     gtgctatcgg acacgaaaca aaacgttgaa actttaagta aaggtgaaga catcaattcg       540
     gtgcggagag tgataagcag accaaaacct actgacgcca tgataagcag agatgtacag       600
     cggtgatcca ggaaatcgtg agaccaagga ggagccgaac atcacagata agtaaagagc       660
     aaatgttgaa tcacaaccct tacaaacaat tataataatt ttttttgcat gattatatac       720
     aaaaaaaaaa aaattttttt tttggtaatt tcactacata aaaatgtgta atgcctagcg       780
     aaacgtacat tcttaattta gataaactat taagaatcga gcaaaacata aggaaatcga       840
     ttaacaaaaa tactaaaccc gacacgctac aaagtaacgt agagacagct cggttattat       900
     tccaagaaat agaaaaagag cttatagaaa ggcaagacga aattgccgat acacaactat       960
     ttacgtatat aaagaaggct agaaacgcaa taggttatat tgaacagact tgtaaaagca      1020
     agatagtaaa gatatctatt cctcaccatc aaaatcacac aaatatggct ttcgatgcaa      1080
     gattagccgc atcgatacta ttgcccttcg atggggacag tgaaaaactg tccagtttca      1140
     aggacagtgt aaaatttcta aaaacagcaa cagaagcggc aaatcaccca acactcaaac      1200
     ttttcataat aaccagaatc tcaggaaagg cacgcgatgc attgcctacc gacatcgacg      1260
     ataagtcgat cgacgaaata attgaacaag taagcaaaag ctgcgaaagc aagataacct      1320
     cagagcaggt acttgccaaa ttaaagacta taaaaagagg gacagcgaaa caacaatact      1380
     gcgaagaagt cgaatcgctc tgcagtcagc tgtccagggc atacattaaa gaaggcattc      1440
     cacaagcgat agccaagaaa atagctacga aagcgggcgt ggaaacacta attaaaaccg      1500
     tttccacaga aaatgcgaaa atcgtactac aagctggttc gttcccaaca atcgaacaag      1560
     ctatccaaaa acttaatgaa ctacctgaca ataccgaaag caatgatgtc acccgtgttt      1620
     tcaatataaa tacaaatcaa aagcgattcc aaaattttaa ccagggtcat caaagaaact      1680
     ggagaagagg tgcaaataat aataacaaca attttacacg ccgtggcccc catgcgtata      1740
     atcaacgttt ccattatgca ccacgctttg acaatcgacc gcataacggt aaccatcgtg      1800
     gtcgcaatga ctaccgtggt caaccacctc aagggcggca atcgcataga gtatattatg      1860
     ctgacgcgca aaatgccgta ctagcaccaa atccaacata cttgcaacaa cctcaagttc      1920
     aaagtcaagg ccatccgatc tggaacatga gccctcagca accgcagcaa catgtaaaca      1980
     atcaaacaca gaatcagaat tttttaggaa caatgggtca atatactcaa tcaatgtagc      2040
     agcgtcaaat tttgtcattt taacaataag cgtttcaaac caactatgct ccttcttagt      2100
     tgattcagga gcggatattt cactactaaa attaaaagtc ctaaatcgag gaataccgtt      2160
     caacccaaat aatgcatgtg tgttacgcgg gataacacct ggcgaatcta aaagtttagg      2220
     aacaatcaat tgtttaacat acatacaaga taccgtttta aatagcacct ttcacctaat      2280
     taacgacgat ttcccgatac ctaccgatgg tatactggga agggatttct tgacatcata      2340
     tcgatgcgaa ataaattacg acacgtggat tttaaccgca aacgtaaaca acaatcgaat      2400
     agaaatcccg atacagacaa acctgaatgg atctacttgg atccctgcca gatcagaagt      2460
     atttagagta ataaataacc taaatacaga taaggatgta gtactcacct catccgaaat      2520
     tcaaccgggc gtattctgtg cgaacgccat tgtaaatagg aacgcacctt atactaaaat      2580
     aatcaatact aatgaatatc cggtacatat aagtaattct aattttaaat ttattgactt      2640
     agaaaaattt tacaaagcaa acatttataa gagtaacgat tctaatcggc tagaaaagtt      2700
     acaagcagaa ttaaaattag atgggactcc ttcattcgtt agagaccgtc taaaaaactt      2760
     gtgcaacgaa tataatgaca tttttagtct taaagatgat ttactatcat gcaataattt      2820
     ctacaaacaa acgattaacg ttacggataa ggcgccggtt tacataaaaa actataggaa      2880
     tgcacaatgc cacaaagaag aaatctgtcg tcaagtcgat aatctgattg aaaatgatat      2940
     tatagaacct tctgtatcta attacaattc acccatacta ctcgtaccta agaagtcgag      3000
     tgatggtgat aagaaatgga gactggtagt agactttagg caacttaaca aaaaattgtt      3060
     agccgataaa tttccactgc caaggatcga cgatattctc gaccaactcg gcagagccaa      3120
     atatttttcg acacttgatc tcatgtcagg ttttcaccag attgagatcg agaaaaattc      3180
     cagagagttc accgcgttct ctttgcagga acgtggacat tttcagtaca aacgattgcc      3240
     gtttggactc aacataagtc caaacagttt ccaaagaatg atgtctattg cactcagtgg      3300
     cttgagccct gagtgtgcat ttttatatat cgacgacgtc atagtcgtag gctgttccgt      3360
     cgaacaccat ttgaccaatt taaggaaagt ttttgaatgt ttcaggcgaa ggaaccttaa      3420
     agtaaatcct tctaagtgca attttttcaa gtcggaagtg acttttctag gtcataagat      3480
     cactgataaa gggatcttac ccgacagttc caaatatgac gttattaaaa attacccaac      3540
     accacaaaac tccgaccaag tgcgaagttt tgtggcgatg tgtaattatt acagacgatt      3600
     cattccacac tttgcaagca tatgtcattg tctgaataaa cttctaagaa aaaatgtaac      3660
     ttttgactgg accgatgaat gtcacaaagc attcgagaaa ttaaagaata ccctattatc      3720
     tccaagaatt ttgcaatacc cagacttcca aaaaccattt attttaacga cagacgcatc      3780
     agattttgca tgtggggcag tcttatccca aattcacgaa aacaatgatc tgcctgtttc      3840
     tttcgctagt cgcgcgttta caaaaggcga agcaaacaag cacatcattg aaaaggagtt      3900
     agcagctata cactgggcga taatgcacta tcgtccatat ttactaggta gaaaattttt      3960
     agttcgtact gaccatcgac cgctagtata cctatttggg atgaaaaatc catcctcaaa      4020
     gttaacacgg atgaggattg atcttgaaga atttgacttc gaggtagaat acgtcccagg      4080
     taaaagcaat gtcgtggcag acgcattatc tagaattaat ttaacatcag aaaaacttaa      4140
     atcaatgaac attctacaag tgcagactag gtcaatgcaa cgcaaaccaa gtccagccaa      4200
     cactaatatt caaacgaatt caccgaagcc tgatcaactt cgtgtgtatc aagcagttaa      4260
     taatgaacaa atttataaac ttaaaaaact acaatttact ttgcaaaaac atagaagtga      4320
     accaagaatg gcaatcaata ttctcgagaa aaactacaaa aagggactaa ctctagcgtt      4380
     agatcttact atcagcagaa aagaattgcc aaatgtattc aaattaatag aaaacggtac      4440
     tcgcctacag cataggacag aacaaagctt tgaaagtaag agcattgcta tttcgactag      4500
     cgatgccata tttcactaca taagcatcaa tgatttcaaa tctataggaa atcaaacgct      4560
     taaagatatc actatcataa tttacgaacc tccaaaaacc attaccaatc ccgacgaaat      4620
     tcatgaaatt ttgcgacact atcatgatac acctatcgga ggtcatgttg gcataaaccg      4680
     tttgtacaag aagctcaaaa acttgtatta ctggccaaac atgaaatata tagtgacaaa      4740
     atttatcaaa tcatgtgaaa catgcaaaaa gaataagcat ttaacaggag tgcaagagaa      4800
     aatggtaaaa acaacaactc caactaaagt atttgatgtt gttgctatag acacaattgg      4860
     accattcaca ttaagcaaca aaggaaacag atacgcagta accatacaat gcgatctgag      4920
     caaatacgta attgcaatac ctattcccga caaatctgct aataccattg caagagccgt      4980
     ggtagaagga tgcattttaa tttacggacc gatgaaagca atcagaactg atcaaggtac      5040
     agagtataaa ggtatattcg attcagtttg taaattgctc aacatcaacc atactctagc      5100
     aaccgcttat catccacgaa cgttaggagc gttggaaagg aatcacagat gtttgaacga      5160
     atatctgaga tcttttgtca acaatctgaa aaacaattgg gacgaatgga tatcatacta      5220
     ttgctttagt tacaatacta ctccgaacac aaaccacaat tattctccat ttgaaatagt      5280
     ttttggaaaa acagtaaaca gctttgaaca aatgaatacg aatcaaatag acccaatata      5340
     caattatgat tcttatgtta acgaattaaa attcaaatta caatccatac atcaccatat      5400
     ttttcaacaa atcgagaaag ttaaagaaac aagaacacac caagcaaatc aaacaattgt      5460
     accaacacca ctcagagtag gagataaagt ttatctaaaa ctagaaggca gaaaaaagtt      5520
     agatatagta caagacggac cacatattgt aatagaaatt gataacgtaa atgcaactat      5580
     acaacatgaa caatctgcaa atatagtaaa aactcataaa acaagattaa ttaaacaaaa      5640
     ccaaataatg taataaaaca atacacaacg acgaagtaag tgagttcaca acaatctttt      5700
     cgaatggcta caccattctt ctctgagggg gaagg                                 5735
//
ID   Gypsy-639_AA-LTR repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-639_;
KW   Gypsy-639_AA-I; Gypsy-639_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-444
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-444
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2142-2142 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 444 BP; 133 A; 104 C; 67 G; 140 T; 0 other;
     tgtagtatta caaatcaatt tcgcatggtt taaatgaatc ttcaaatttc cagtacttgc        60
     cagtactgta ctcgtcattc gcatttgtta aagtctgttt gtcataaatt acatcacagc       120
     caaattgctt cctagaagat ctccggaaac cttccataaa atatgcataa taaattgtga       180
     cactcagtca gcagtttaac gtttaccaaa ctgtgcagct aaaacattct cgcttccttt       240
     attttgagac cttcgtaatt gttaccacat gtgcgcaaac aacgcaggca agttttgaaa       300
     actcactcgc ttcgctcgtg cagtgtccaa gctttctcca tacctttgaa gttttcaata       360
     aaacactttc agtcaaccgt ccaaagagtt cgcatgttat ctcatgaact gaaactatcc       420
     gaagttccga tgcctgatac caaa                                              444
//
ID   Gypsy-63_AA-I repbase;    DNA;    INV; 4309 BP.
XX
AC   AAGE02026010;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_AA_;
KW   Gypsy-63_AA-LTR; Gypsy-63_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4309
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026010; Positions   44964   49272.
XX
CC   Positions [3232-3690] - Integrase core
CC   'CTAAT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..944
FT                 /product="Gypsy-63_AA-I_2p"
FT                 /translation="MAENDPNAVFEGAQQGAQGAAPPAAPRLVLPAVVPAA
FT                 VPPSFSIDPFDRHKMKWSRWVQRLEGAFVLFGIQNDVRLYMLLHYMGGETY
FT                 DILSDKIAPELPQQRTYDQIVAVLEAHFNPEPLEILENFRFKCRKQADDRP
FT                 EETIDEYLIALRKLAITCNFGPYLNTALRNQFVFGLKDRAIQSRLLEVRNL
FT                 TLDRAREMAVSMELSNKGGREIQAKQGKSEVNLVENSRGGAAKGNYAKAGK
FT                 MKSEKFERKKKGECFRCGSDAHFADKCIHIRTQCNYCKLPGHLEKVCIKKK
FT                 KSAQGIGEEI"
FT   CDS           1228..4230
FT                 /product="Gypsy-63_AA-I_1p"
FT                 /translation="MLKVNVLYGEKSLVLPLYVSNVKKHPLLGRQWMRAMR
FT                 IDLNEIAYAEVNKLAVATTPALESTPAAVKSLVEKYAALFDESTGQIKGVS
FT                 AKLCLKPNTNPVYLRARSVPFSMRAAVEEELDKLINEGVLVKVNHSSWATP
FT                 VVPVLKANNKVRLCGDYKVTVNPNLVVDDHPLPTIEELFANVAGGEKFTKI
FT                 DLTQAYLQLQVEEGDQEVLTLNTHKGLYRPTRLMYGIASAPAIWQRLMEQI
FT                 LNGIPGVTVFLDDIRITGPNDRVHMERLEEVLKRLRSYNMRINLQKCQFFA
FT                 NEIDYCGYLINKTGIHKAKKKITAIQNMPVPENKDQVRSFVGLVNYYGRFF
FT                 PNLSSTLYPLNNLLKNDVRFEWSRQCDEAFNKIKLEMQSNRFLVHYDPTQS
FT                 LVLATDASPYGVGAVLSHVYSDGSERPIQYASQTLNKTQQAYKQVDREAYA
FT                 IIFGVRRFYQYLYGRRFTLLTDNKPLKQIFSDTKGLPKMSALRMHHYATFL
FT                 ASFNYEIKFRPTSQHYNADAFSRLPLKKKPAENVIEEADYLEINIIETLPL
FT                 TVDELAKATAADQTVKVLLQGLRNGKEVDARERFGVDQLEFTLQKGCIMRG
FT                 IRVYVPPSLRAKVLAELHSTHFGTSRLKALARGYVWWEKIDNDIEDVIRNC
FT                 NNCQSTRAEPAKVPTYCWETPSKPFERVHVDFAGPFKNTYFIVLVDAYTKW
FT                 PDVRILNNITTATTIRVCREYFSTYGIPSVLVTDHGVQFTAEEFQRFLKMN
FT                 GVYHKMGAPYHPATNGQAERFVQTFKSKLKSLQCDASTMHAELCNILLAYR
FT                 KTIHPATGKSPSMMLYNRQIRSRLDLLVPDSAAARKQVDEKVRNLSEGTRV
FT                 AARDYMDKTMWKYGVVSEKLGMLHYHVQLDDGRTWKRHIDQLREVGPNLPK
FT                 GRDQTTPVLVEDVPVEVPQPNVPEPAASASVSVTPNVPSPSQEVPAESPPE
FT                 IPGPSEQRSVGAASGLRTPAVSNQKANHESPRRSGRVIRPPNRLNL"
XX
SQ   Sequence 4309 BP; 1167 A; 1007 C; 1162 G; 973 T; 0 other;
     ggtattttgg cgacgagtgg ttgtggacgc tttgagagat ggcggaaaac gatccgaatg        60
     ctgttttcga gggtgcacag caaggtgcac agggagctgc tccgcccgct gctccgagat       120
     tggtgctacc ggctgttgtt ccagctgcag tgccgccttc gttttcaatc gacccattcg       180
     accgacacaa gatgaagtgg tcgcggtggg tgcagcggct cgaaggtgcg tttgttttgt       240
     ttggcataca gaacgatgtt cgtctctaca tgttgctcca ctacatgggg ggagaaacct       300
     acgatatatt gagcgacaaa attgcccccg aactaccgca gcagaggacg tacgatcaga       360
     tcgttgctgt gctggaagct cacttcaatc ctgaaccact ggagattcta gagaatttcc       420
     gtttcaagtg ccgcaagcaa gcagacgacc gcccggagga aacgatcgat gagtacctaa       480
     ttgcactgcg aaagctcgcg atcacctgca atttcgggcc gtatctcaac actgctctgc       540
     ggaatcagtt cgtgtttggg ttgaaggaca gagcgataca atcccgacta ctggaagtgc       600
     gaaacctgac gctggatcga gctcgggaaa tggccgtttc aatggagctg tcgaacaaag       660
     gcggacgaga aattcaagcg aaacaaggaa aatcggaagt gaatcttgtg gaaaattccc       720
     gaggtggtgc tgccaaaggc aactatgcga aagcaggcaa gatgaaaagt gagaagttcg       780
     agcggaagaa gaagggcgag tgttttcggt gcgggagcga tgcgcatttc gcggacaagt       840
     gcattcacat tcgcacacag tgcaactact gcaaactccc cggacatttg gaaaaagtgt       900
     gcataaagaa gaaaaaaagt gctcagggca taggggaaga aatctgaggc aaattagctg       960
     gaagagccca acggtaacca aaatgattcg aaagtgattt cgctggacga agtatgtaag      1020
     ctggaggttg cggccaagcc gccatcgacg aagttttggc tggtggttca agtgaatagt      1080
     gcgaagatcc ggtttgaggt tgacacgggt gccccggtta cgattattag tgccgaagat      1140
     aagaagaagc atttcgctac cgatagtctg ctgccgtcgg atctgaagtt ggtgagtttt      1200
     tgcgacacga aaatccaaat tcatggaatg cttaaagtga atgtgctata cggtgaaaaa      1260
     tccctggttc ttccgttgta cgtttcgaac gtgaagaaac atccgctgct ggggcgacag      1320
     tggatgcggg cgatgcgaat tgacttgaac gagatcgcct atgcggaagt aaacaaactg      1380
     gctgttgcta ctactcctgc attggagtcg acgcctgctg ctgttaaatc gcttgtggaa      1440
     aagtacgccg ctctgttcga cgagtcgact ggccagatca aaggagtgtc tgcgaaattg      1500
     tgcctcaagc caaatacgaa tccagtctac ctgcgagcca gatccgttcc gttttcgatg      1560
     cgagcagctg tcgaggagga acttgataag ctgatcaatg aaggagtcct agtcaaggtc      1620
     aaccacagtt cgtgggctac gcccgtagtt cctgttctca aggccaacaa taaggtgcga      1680
     ctatgcggtg actacaaggt tacggtcaac ccgaacctgg tggtcgacga tcacccattg      1740
     ccaacgatcg aagaactttt cgccaacgta gctggagggg aaaagttcac taagatcgac      1800
     ttgactcaag cctacctaca actgcaagtc gaggagggtg atcaggaggt gctgaccctg      1860
     aatacgcaca agggtctcta caggcctaca cgtttaatgt acggcattgc gtctgcaccc      1920
     gctatttggc agagactgat ggagcagatc ctgaacggga tacctggcgt caccgttttc      1980
     ttggacgata tccgaattac gggtccgaat gaccgggttc acatggagag actggaggaa      2040
     gttctgaagc gtctccgttc atacaacatg cgcatcaatc tgcaaaagtg ccaattcttt      2100
     gcgaacgaga tcgattactg cgggtaccta atcaacaaga caggtatcca taaggcgaag      2160
     aagaagataa ctgcgatcca gaatatgcca gtaccggaga ataaggatca agttcgttcg      2220
     tttgtgggac tagtgaacta ttacggtagg tttttcccaa atcttagttc caccttgtac      2280
     cctctcaaca atttactgaa aaacgacgtg cgcttcgaat ggtcgaggca atgcgatgag      2340
     gcgttcaaca agatcaagct cgagatgcag tcgaataggt tcctggtaca ctacgatccc      2400
     actcaatcgt tggtacttgc caccgacgct tcgccgtatg gagtcggcgc agttctgagt      2460
     cacgtctact ccgatggctc agagcgacca atacagtacg catctcagac gctgaataag      2520
     acgcaacagg cctacaaaca ggtcgaccgg gaagcatacg cgatcatatt tggagttcgc      2580
     cgcttctacc agtacctgta cgggagaaga tttacgctgt tgactgacaa caaaccgctt      2640
     aaacagatct tttctgatac gaaaggcctt cctaagatga gcgcactgag aatgcatcac      2700
     tacgccacat tcttggcatc tttcaactac gaaatcaagt tcagaccaac gagccaacac      2760
     tacaatgcgg acgccttttc gcgtttgccg ctgaagaaga agccagctga gaacgtgatt      2820
     gaggaggcag attatctaga aatcaatatc attgaaacgc taccgctgac tgtggacgag      2880
     ctcgctaagg cgaccgcggc ggaccagacg gtgaaggtgc tgctgcaggg attgcgtaat      2940
     ggaaaggagg tggatgcaag agaacgtttc ggtgttgatc aactggaatt cacgctgcaa      3000
     aaagggtgta tcatgcgtgg cattcgtgtc tacgtacctc cgagtttgcg tgccaaggtt      3060
     ctagccgagt tacactcaac acatttcggc accagtcgat tgaaagccct tgctcgtgga      3120
     tacgtttggt gggaaaagat cgacaacgac atagaagatg taatacgcaa ctgtaacaac      3180
     tgtcagtcaa caagggctga acccgcaaaa gttccgacgt attgctggga gacaccatca      3240
     aagccgtttg aacgggtgca cgtagatttt gcagggccgt tcaagaacac gtacttcatc      3300
     gtgttagtgg acgcctatac gaaatggccc gatgtacgca tcctgaacaa cataaccacc      3360
     gctacaacga ttcgagtttg tcgagaatac ttttcaacgt acgggattcc ctccgtgctg      3420
     gtgacggacc atggcgtaca gttcactgcg gaggaattcc agcgcttcct gaagatgaac      3480
     ggagtttacc acaaaatggg agcgccgtac cacccggcaa cgaatgggca ggccgagaga      3540
     tttgtccaaa cgttcaagag taagttgaaa agcctgcagt gcgacgcgag tacgatgcat      3600
     gccgagttgt gcaacatact acttgcctat cggaagacta tccatccggc gacgggcaag      3660
     tcaccgtcta tgatgctgta caacagacag atacgatcgc gacttgatct gctggttccg      3720
     gatagtgctg ctgcgagaaa gcaagttgac gaaaaagttc gcaatctctc tgaggggacg      3780
     agagtagcgg cgcgcgacta tatggataag accatgtgga agtacggtgt ggtttccgaa      3840
     aagctcggaa tgctgcatta ccacgttcaa ctcgacgatg gcaggacatg gaagcgccat      3900
     atagatcagc ttagggaagt tggtccgaac ctaccaaagg gacgagatca gacaacacca      3960
     gttttggttg aggatgtgcc tgttgaagtt ccgcaaccga atgttcccga gccagctgca      4020
     tcagctagtg tcagtgttac cccgaatgta ccatcgccta gtcaagaagt tcctgctgaa      4080
     tccccgccgg aaattcctgg cccttcagag cagagatccg tcggagctgc ttctggttta      4140
     cggacacctg ctgtctccaa ccagaaggcc aaccatgaat caccgaggcg atcgggcaga      4200
     gtcattcgac cgccaaatag actcaatctt tgaaatgttc ctaacactaa atatttcatt      4260
     attactattt tgtattgaag ttgaatttca tttgttaggg gggaagagc                  4309
//
ID   Gypsy-63_AA-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   AAGE02026010;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_AA_;
KW   Gypsy-63_AA-I; Gypsy-63_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-226
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02026010; Positions   44738   44963.
XX
SQ   Sequence 226 BP; 65 A; 54 C; 37 G; 70 T; 0 other;
     tgtcataagt tacactagat tttctagacc attgcgttat acctgttttg tattagacat        60
     accttgcgac agctgtcaaa gacttcccgc tcttttgtaa aagcttttag ttgagaccga       120
     gcaagcaaac tataaataca cgttttccaa catcagtgaa atctacttta cggataattg       180
     aacggcgttc ctcttccgag acccacattc ggctaccgtt acaaca                      226
//
ID   Gypsy-63_AnFu-I repbase;    DNA;    INV; 5226 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5226
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2947-2947 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           700..2481
FT                 /product="Gypsy-63_AnFu-I_1p"
FT                 /translation="MKRGIAKNTYNRKSSAWLVEDDTNMGNPNSSSDRDFA
FT                 KPVKSVKEPSASSSYSSLSFATLQIGECKPMEGEEEIDKITFDRWRDILES
FT                 ATALAGINGEVEKANIFKMXAMLDGTFSKSGPDAVPYPYSNAIQRLEDYFG
FT                 SRDYVLFQRQKLRSMPQGADEADLKYVRRVAAVAKLCGYVNDQLVETVADV
FT                 IQHHANNRKVRDVARKAARKGSSLQELVDWVRSTEIEKHAEEIFSKNHPKE
FT                 EAVSVMAVSYTDPRLQRRSSSDFRGRGNFSRNRGGFHRTNGAGFTNNKPCW
FT                 RRTSMGHRPDNCFAIDKLCHRCQTKGHIQRACTSHGAKHENVDEGEKAPKM
FT                 RKISALTAEIDDQINKPNQPEGTHGLVSTTDHRSCNLETNAELEDQGFDMI
FT                 HPAAPSSHGTLDQGTKEEYVMCSLDLRGIESTGSIIGYVAGVAVNFLIDSG
FT                 AEVNTIGDCVFNKXMSDPISHPIYAMKEGSDKPLKAYATTRPIRVVASFLA
FT                 ALVITPDRPHLLEKXYVVPGAKALLGRNTAIRYSVLQLGLQVPILEEIGIN
FT                 TETNMRELCALESHTHFPMFNMPPVSLRYDKSLPPSRMVFTNIPPAF"
FT   CDS           2375..5107
FT                 /product="Gypsy-63_AnFu-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="NHIPTFPCLTCHQYHSAMTRVYHRQGWFLLTFRQHSR
FT                 VEVENRLQSLLASDIIEKVTSDMDRSFCSSLLVVPKGKQDIRLVVDLRGPN
FT                 KCVIRTPFRMPSLEEILARLRGALWFSTIDLTNAFYHIILDESCRHLTNFF
FT                 SGKDTFRFKRLPFGLCNAPDIFQEALQTVVLANCSGTVNYLDDILVFGNTK
FT                 EEHDFNLGEVLSRLRQHNVLLNPAKCVFGKQSVKFLGFLLSHDGWRVDEDK
FT                 RKAIAGFRKPGTIQEVKSFLGLINFIEKFTPSRAEKTVKLRALANSDIFYW
FT                 THDEDFEFEEIKRIALHSIIRLGYFDHKDRTELFVDASPFGLGAVLVQFDE
FT                 IKTPRIIACVSKSLSMVEKRYPHTQKEALAIVWAVERFSYYLTNINFTIWT
FT                 DSEANKFIFGSLYRSGKRSITRAETWALRLLPFNFQIKCVPGDQNIADVLS
FT                 RLIDDSQVDEPFDDDNERHMLYALDTTNMSMSWSDIQLASEEDEELTEVRL
FT                 CMETSKWPRHLGRYECLVKQLRSLDALVFKDDLVVLPKSLRERALATAHEG
FT                 HVGCGATKRILRDHFWWPNMSKEADKYVSGCTTCLAISQRNPPVPLISRSL
FT                 PEGPWEILQIDFLSVQGCGSGHFLVCVDIYSRFLNVIEMKQIDASSTNAAL
FT                 CKIFKTWGLPLAIQSDNGPPFKSKEFIQFWEQKGVKVRKSIPLSAQSNGAV
FT                 ERQNQGIIKAISAAKIEKKNWSEALEEYVHLHNTRKHHARLGVIPFELLAG
FT                 WRYRGTFPSLWDAKIGIERSVVREDDAHAKLLSKNYADKHRGAKESNIKVG
FT                 DKVVVFIPQKKKTDPSFSKETFTILARDGAKVVIRSEDGTQFSRNVRDVKL
FT                 LPCRAVPYDHSLSIDGNSQNSNTVTDLSPMPRASNRLGEERPQRHARKPAW
FT                 LEDMELY"
XX
SQ   Sequence 5226 BP; 1563 A; 1005 C; 1235 G; 1417 T; 6 other;
     atggcgcagt taggagggat gttgatgaaa ttgtgatatt gtagatcaat attatgagat        60
     tttcagtata ataataaacc gttttatggg ttttcgatcg atacgggtga gtagcacatt       120
     atcgatttgg attatcacgc acacgaagta gtgttcttgt aagtgttagt actagtaagc       180
     acattcctac gggaatcgat gcaaccgagg acacactctc gcacacgagc tggatgcgca       240
     tggaaggtag atggattcac gcacattcct gtaataggat cgatgccgat gatagtagtt       300
     gtagcgcaca ttccttgatg gaatcgatgc aagtattaga actagtaggc acattcctac       360
     gggaatcgat gcaatcggaa atacgcacac tcgtaaacga gctggatgcg catggcggga       420
     agataaattc acgcacattc cctaatggga tcgatgccga tgaaagtagt tgtagcgcac       480
     attccttgat ggaatcgatg caagtattag tactagcaag acacacacat ctactgcgac       540
     cgattctact agcgaacgaa acggcgcagg aaatttgtat tctcgttcta cccaacacaa       600
     tcgtacgast tagagtgtgg aagattagtc ctagtcggat cgcttggtga atctagcaag       660
     ctatagtttt gttgcggaaa atttccacat taagccataa tgaaacgcgg aattgctaaa       720
     aacacgtata ataggaaaag ttcagcatgg ttggtcgagg atgatacaaa catgggcaat       780
     cctaattcat catcagatcg tgattttgca aaaccagtga agagtgttaa ggaaccttcg       840
     gcgtcctctt cctattcttc tttgtcattc gctacgctcc agattggcga atgtaagcct       900
     atggaaggag aagaagagat cgacaaaatc accttcgata gatggcgcga cattttggaa       960
     tctgcaacgg cgttagcagg catcaacgga gaagtggaaa aagctaacat ttttaaaatg      1020
     aawgctatgc ttgacggtac attcagcaag agtggaccgg acgctgttcc wtacccatac      1080
     tcgaatgcca ttcagcgtct tgaagattat tttggctcgc gagattatgt cctgtttcag      1140
     cgacaaaagc ttcggtccat gccacagggt gccgatgaag cggatctgaa gtatgtgcga      1200
     cgtgtagcag cagtggccaa actttgtgga tacgtgaatg atcaactcgt ggaaacggtg      1260
     gcwgatgtaa tccaacacca tgccaacaat cgtaaagtgc gagatgtcgc tagaaaggct      1320
     gctcgtaaag gaagctcctt acaggagtta gtggactggg tacgcagcac ggaaatcgaa      1380
     aagcatgctg aggagatttt tagtaaaaat catcccaaag aagaagcggt gtctgtaatg      1440
     gcggtgtcgt atacagaccc tcgtttacag cgcagatcat catcggattt tcgaggccgg      1500
     ggaaactttt cgcggaatcg tggaggattt catcgtacaa acggcgcagg tttcactaac      1560
     aacaaacctt gttggcgtcg cacaagtatg ggccaccgtc cagataactg tttcgctatc      1620
     gacaaactct gtcatcgttg ccaaacgaaa ggccacattc aaagggcatg cacttctcat      1680
     ggagcaaaac atgaaaacgt cgatgaagga gagaaagctc caaaaatgcg gaaaatttca      1740
     gcgctaacgg ctgaaatcga cgatcaaatt aataaaccta atcaaccaga aggcacacat      1800
     gggctagtta gtaccactga tcaccgatcc tgtaatctgg agactaatgc agaactggaa      1860
     gaccaaggtt tcgatatgat tcaccctgct gcaccatctt ctcatggcac actagatcaa      1920
     gggaccaagg aagaatatgt aatgtgctca ttagatctgc gtggtattga aagcactggt      1980
     tcaattatag gttatgtggc tggagttgca gttaattttt tgatagattc tggagcagag      2040
     gttaacacca taggggattg cgttttcaat aagmtaatga gtgatcctat atctcacccc      2100
     atttacgcca tgaaggaagg atcagacaaa ccgctaaaag cttacgcaac cactcgcccg      2160
     atacgtgtcg tagcctcttt cttggccgca ttggtaataa cgccagaccg tcctcacttg      2220
     ctcgaaaaaw tttatgtggt tccgggagcg aaagcactgt tagggcgtaa cacagcaatt      2280
     aggtatagcg tgttacaact gggcttacaa gttccaattt tagaagagat agggataaat      2340
     acggaaacga atatgagaga actgtgtgct ctagaatcac atacccactt tcccatgttt      2400
     aacatgccac cagtatcact ccgctatgac aagagtttac caccgtcaag gatggttttt      2460
     actaacattc cgccagcatt ctagagtaga ggttgagaat cgattgcaga gcttattagc      2520
     atccgacata atagaaaagg ttaccagtga tatggacaga tcattttgct cttcactatt      2580
     ggtagtaccg aaaggtaaac aagatataag gctagttgtt gatttgagag gaccaaacaa      2640
     atgtgtcatt agaactccat ttaggatgcc ttctttggaa gagattcttg caagacttcg      2700
     gggtgctctt tggttctcaa ccattgatct tactaatgca ttttaccata tcattttaga      2760
     tgagtcgtgt agacatctga caaatttctt ttcgggaaaa gatacattcc gattcaaacg      2820
     gttacccttt ggtctatgca acgctcccga catttttcag gaagccttgc agacggttgt      2880
     tctagcaaat tgttctggca cggtgaatta tcttgatgat attctcgtat tcggaaacac      2940
     gaaagaagaa cacgacttta atctcggcga agtattgtct cgtttacggc agcataatgt      3000
     cctgttaaac ccagccaaat gtgtttttgg taaacagtca gtcaaatttt taggatttct      3060
     tctctctcac gacggttggc gagtggacga agataaaagg aaagctatag ctggatttcg      3120
     aaaaccggga actattcaag aagtgaaaag cttcttgggg ctcataaatt ttatcgagaa      3180
     gtttactccc agtcgagctg aaaagacggt aaagttgagg gcactagcaa attctgatat      3240
     tttctattgg acacatgacg aagattttga gttcgaggag ataaaaagaa tagctttaca      3300
     ctcaattatc aggttaggat actttgatca taaagatagg accgaattat tcgtggatgc      3360
     ttcaccgttc ggtctaggag cagtgcttgt acagttcgat gaaatcaaaa cgcctagaat      3420
     aatagcgtgc gtttcaaagt ccttgtcgat ggtggaaaag cgttatcctc acacccagaa      3480
     ggaggcgtta gccattgttt gggcagtcga gagatttagt tattacttaa ctaacatcaa      3540
     ctttactatt tggactgatt ccgaagctaa caaattcatc tttggcagcc tgtatagatc      3600
     tggaaagaga tcaattactc gtgcggaaac atgggccctt cgtcttttgc catttaattt      3660
     tcaaattaag tgtgttcctg gagatcagaa cattgcggat gtattgtccc gtcttataga      3720
     tgattctcag gtagatgagc cgtttgacga cgacaacgaa aggcatatgc tatacgctct      3780
     cgacacaact aatatgagta tgtcttggtc ggatattcag ctggcttcag aagaggacga      3840
     agaattaaca gaagtgcgct tgtgtatgga aactagcaaa tggcctcgac atttgggccg      3900
     ttatgaatgt ttggtcaagc agttaagatc cctcgatgcg cttgtattca aagatgatct      3960
     ggttgtttta cccaagtcgt taagagagag ggctttagca acagcacatg aaggccacgt      4020
     tggctgcggg gctaccaaaa gaattcttcg tgatcatttc tggtggccta atatgtccaa      4080
     agaggccgat aagtacgtta gtggttgtac gacttgccta gccatttctc aaagaaatcc      4140
     accggttcca ttaatcagcc gatctcttcc ggaaggcccg tgggagatac ttcaaattga      4200
     tttcctttct gtacaagggt gcggttcagg acacttttta gtttgtgtag acatctactc      4260
     gcgttttttg aacgttatcg agatgaagca gattgatgca agttcaacga atgcagcttt      4320
     gtgtaagatt tttaaaactt ggggtttacc acttgctata caaagcgata acggtcctcc      4380
     cttcaaaagt aaggaattta tacaattctg ggagcaaaaa ggtgtaaagg tgcgtaaatc      4440
     gataccgtta agtgcacagt cgaacggagc tgtggagcgg cagaatcagg gcatcattaa      4500
     ggcgatatca gcagctaaaa tagaaaaaaa gaattggagt gaagctctgg aggaatatgt      4560
     tcacttgcat aatactcgta aacaccatgc gaggttgggc gttattcctt ttgaactttt      4620
     ggcgggatgg cgttacagag gtacttttcc tagcttgtgg gatgcaaaaa taggtataga      4680
     gcgatcagtt gtgcgagaag atgatgcaca tgctaaattg cttagtaaga attacgcaga      4740
     taaacatcgg ggtgctaaag agagcaacat taaagtaggc gacaaggttg tagtttttat      4800
     tccgcagaag aagaagactg atccttcgtt ttctaaggaa acattcacga tattagctag      4860
     agacggagcg aaagtagtaa ttcgtagcga ggatggaact caattctcaa ggaatgtgcg      4920
     agatgttaaa ctattaccgt gccgtgccgt accgtacgat catagtttgt caatagatgg      4980
     aaacagccaa aactccaaca cagtaacgga tctatctcct atgccgcgtg caagtaatag      5040
     actaggggaa gaaagacctc aacgtcacgc gcgtaagcca gcttggttag aagatatgga      5100
     gctatattaa ttctgataat ggtttctttt gcattgattt tcttttcttt taattttaat      5160
     aaaatttggc atctgatatt gaactataga aataattaag tattaaagag taggcgagag      5220
     gtagat                                                                 5226
//
ID   Gypsy-63_AnFu-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-205
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2875-2875 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 205 BP; 75 A; 24 C; 51 G; 49 T; 6 other;
     tgtagggatt ataggataca ggaaataaag acagaaataa tgagaaagag twggaaggat        60
     atagatgaat tcggacatgg atatgacgac ggaaaakkag aataaatggt cagttgagtt       120
     ggaactgtma gctggaaagc atatactgta atktgttgcg tgttaaagta atccgaaatt       180
     gkaattccct cctccggtca ctaca                                             205
//
ID   Gypsy-63_CQ-I repbase;    DNA;    INV; 4954 BP.
XX
AC   AAWU01018550;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_CQ_;
KW   Gypsy-63_CQ-LTR; Gypsy-63_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4954
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 505-505 (2011).
XX
DR   GenBank; AAWU01018550; Positions   13796   18749.
XX
CC   Positions [2145-2621] - Integrase core
CC   'CCCT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           350..1975
FT                 /product="Gypsy-63_CQ-I_1p"
FT                 /translation="MKFPHARHLSNEEVDYELRLRNKEEETRQNLNSKRDI
FT                 LRKLFQIDRNEKYNYPDPPYQWEDEMEFVKSKVDGLLLIAQGKIESETRSK
FT                 LVHYYYRIQRAIAQTQEGQKLQKALLTPVSRLLQSVSSEGNFTQSEPDTDT
FT                 DNKGKPNTNPNPNPNPNPNPNPNPNPNPNPNPNPNPNPDVNPNPTVEELWE
FT                 VIKRLQTELEISREENRRATESDSSESVRVPRPVSPPRHPPRPRPGFESSV
FT                 SSRNDNFRERYHRNHQRRIEHWKISFTGEPNSLSVEDFLFRLKQIAKREEV
FT                 TDQKLLRDVHMVLDGVAANWFFTYADEVKTWEDFEKRIRLRFGNPNQDQGI
FT                 RQALQNRKQQRNEPFAAFVDEIGRLNKMLSKPLSKRRQFEIIWDNMRSYYY
FT                 TKLSTTTVVDLDHLKSLNRGIDAADSHLQQILAKQQQHVHHVDYEEEEVGA
FT                 EEMEFVDAIQPHSGPSGFRAQGNRNRNFRTFNPPREPSQSFNTPQEPSNQQ
FT                 PAARQQVFPNSSSSCDHCKQTGHNWRVCREPKSIFRRTRRNYQEGT"
FT   CDS           1596..3008
FT                 /product="Gypsy-63_CQ-I_2p"
FT                 /translation="MQPILTYSKYWPSNSSMFITLTTKRKKLEQKRWSLST
FT                 RFNHTPGRVGFELKGTETGTSERSTHHENQASRSTRRRNLRTSSQQLGNKF
FT                 SQTHRLAAITVNKLDTTGESAGNRSQYSEEREEIIKKEHEVAHFGAEKTLH
FT                 SLKRHYTWPGMSAQVKKFCRECFKCQTSKAPNLNTTPPMGAQKEFVEHPWQ
FT                 FITLDFVGPLPVSGRGRHTCLLVVTDVFSKFVLVQPFREAKASSVVEFLKN
FT                 MVFLLFGVPEIALTDNGTQFTSKLFRQLLEEFNVTHWLTPSYHPQVNNTER
FT                 VNRVITTAIRATLKQHKNWADNLQEIACAIRSAVHDSTKHTPYFIVFGREM
FT                 VSDGQEYRRMRDLPVAEEQKDGEEQKRRKQLLKDVRNQLVKAYERHRKTYN
FT                 LRSNACCPTYTAGETVLKKTFELSDKAKGFSAKLAPKYEPAVVRRVVGKHC
FT                 YELEDQKGKRLGVFYANHLKKFHLPK"
XX
SQ   Sequence 4954 BP; 1543 A; 995 C; 1072 G; 1344 T; 0 other;
     aattggcgcc caacgttttg ggtcttcttt cattcttttt tctattgaga gttcattaga        60
     acgagtttcg tgggttctta gagcaaatat tcctttattg ggtttctatt ggtggatcga       120
     ttactccttc ctgtttttgg ttgttgtatc actatttatt tattcattta tttatttatt       180
     ctatttattt atttatttat ttatttaatt atttatttat ttatttattt atttaattat       240
     ttattgttag tttgataatt tatgtacacg ataaacttac gttattgagc acataacata       300
     caattttgct catcacattt ttgatactgt gaagttaaaa agaaatacga tgaaattccc       360
     acacgcgaga catttgtcaa atgaggaagt ggactacgaa ctcagactga ggaacaaaga       420
     ggaagaaaca cgacagaatc ttaattcgaa gcgtgatata ttgcgaaaac tattccaaat       480
     tgatcgaaat gagaaatata attatcctga tccaccttat caatgggaag acgaaatgga       540
     atttgtgaaa tcgaaggtag atggactgtt gttgatcgca caagggaaga tcgaaagtga       600
     aactcgatca aaattagttc attattacta ccggatacag agggcaatag cacaaacaca       660
     agaaggacag aaattgcaga aagcactttt gacaccagtc tcgaggctac tccaatcggt       720
     ctcttcggaa ggaaatttca ctcaaagtga accggatacg gatacagata ataaaggaaa       780
     gccaaacaca aacccgaatc caaaccccaa tccaaatcca aatccaaacc ctaatcccaa       840
     tcccaatccc aatcccaacc caaacccaaa tccaaatcca gacgtcaacc caaacccaac       900
     cgtcgaggaa ttgtgggaag taatcaaacg tcttcagaca gagctggaaa tatctagaga       960
     ggagaaccga agagcaacag aaagtgactc tagcgagtca gttcgggtac cgcgcccagt      1020
     ttcccccccg agacatccgc caagaccaag accaggcttc gagtcatctg taagttccag      1080
     gaacgacaac ttcagagaac gttaccaccg aaaccatcag agaaggattg aacattggaa      1140
     aatttcgttt acaggagagc ccaattcact gtcggttgaa gattttctgt tcagactaaa      1200
     acaaattgcg aaaagggaag aagtaactga tcaaaaactt ctacgggatg ttcacatggt      1260
     acttgacgga gtagcagcaa actggttttt cacatacgcc gacgaagtca agacttggga      1320
     agattttgaa aagcgaatca gactgcgatt tggcaaccct aatcaggatc aaggaattcg      1380
     tcaagcacta cagaaccgga aacaacaaag gaatgagcct tttgcagctt ttgtagacga      1440
     gattggacgt ttaaataaga tgctatctaa acctctgtcg aagagacggc aattcgaaat      1500
     catttgggac aacatgcgat cgtattacta tacaaaactg tctactacta cggttgtgga      1560
     cttggatcac ctgaaaagct tgaaccgagg aatcgatgca gccgattctc acctacagca      1620
     aatactggcc aagcaacagc agcatgttca tcacgttgac tacgaagagg aagaagttgg      1680
     agcagaagag atggagtttg tcgacgcgat tcaaccacac tccgggccga gtgggtttcg      1740
     agctcaaggg aacagaaaca ggaacttccg aacgttcaac ccaccacgag aaccaagcca      1800
     gtcgttcaac acgccgcagg aaccttcgaa ccagcagcca gcagctcggc aacaagtttt      1860
     cccaaactca tcgtctagct gcgatcactg taaacaaact ggacacaact ggcgagtctg      1920
     cagggaaccg aagtcaatat tcagaagaac gagaagaaat tatcaagaag gaacatgaag      1980
     ttgcacactt tggagcagaa aagaccttgc acagcttgaa acgccattac acttggccag      2040
     gtatgagcgc acaggtgaaa aagttctgcc gcgaatgttt caagtgtcaa acatcgaaag      2100
     cgcccaactt gaacacaacg ccaccgatgg gagcacagaa agagtttgtg gaacatccct      2160
     ggcaatttat aacactggac ttcgtgggac cacttccggt gtcaggtaga ggtcgacaca      2220
     cgtgtctgtt ggttgtcacg gacgtattca gcaaatttgt gctggtgcaa ccgttcaggg      2280
     aagcaaaagc cagctcggtg gtcgaatttc tcaagaatat ggtattctta ctctttggtg      2340
     ttccggaaat agcgttaacg gacaacggaa cacaatttac ctcgaagcta ttccgacaac      2400
     ttcttgaaga attcaacgta acccactggc tcaccccgtc gtaccaccca caggtgaata      2460
     acacggaacg cgtgaatcgg gtgataacaa cggcgattcg agcaactttg aagcaacaca      2520
     agaattgggc tgataatctg caggaaattg cttgcgcaat ccggagtgcg gttcacgact      2580
     cgactaaaca cacaccgtac tttatcgtct ttggtcgaga gatggtatcg gatggtcaag      2640
     aatatcgaag aatgcgtgat ttaccggttg cagaagaaca aaaggatgga gaagaacaaa      2700
     aacgaagaaa acaacttttg aaagatgtca gaaatcaatt agtcaaagcc tacgaacgac      2760
     acaggaagac atacaacctt cgctctaatg cctgctgccc cacctacacc gcaggtgaaa      2820
     cagtgttgaa aaaaacgttt gaactttccg acaaagccaa agggttcagt gcgaagttag      2880
     cgccaaaata cgagccagca gtagtcagaa gggttgttgg gaaacattgc tatgagcttg      2940
     aagatcaaaa aggcaaacga ctaggagttt tctacgcgaa ccatcttaaa aagttccatt      3000
     taccgaagta gacttttata cacgttttta cagctatgaa ctccctttta agggtgacca      3060
     gatttgaagt ttcgaacaaa ataccaattg ggtaaagcat tcaggttaga cgtgaccttt      3120
     ggagggttca tggtgaggat cagaagctaa cagagtactt cgtgaactcg tctggaagtt      3180
     gtgaatgagt gggttgaagc gatggtgaag agagcggcaa ctgaactaag acgatcgatt      3240
     gagcagtaga aatcgaagaa agggagctgt tcgttgagtt cgctagtatc agggctgagc      3300
     atagacgatg acctgttaaa gtaagccact taattgtgtg atacgaatgt gagcgagtct      3360
     ccgcgatgat tgtaactcct agtacttatg aatgagaacg gtgatgatct ttagttctcg      3420
     aaacgctagt taagttgcac gtctcaacac cccaagtcgc tgaaactcat tcacaaacaa      3480
     ctcccaaacg aagctcagtc ctcaggttgg caataacatt cggctttgcc ttacccaacc      3540
     agccatgaat ctgtccataa aaggggggga agtggaagaa gaagacaccc cacacgccca      3600
     caaggtggca acacttgtgg agatgtaaat tttgtacata gtagttagta attgtttacg      3660
     ttagtcgcgc ctatggccct acgttaacct aatgttaatt tttgttgaat ttatgtgagt      3720
     agtttgttta aaactcacaa tattgtttgt ttttcggcat aattgtatga attcgttttt      3780
     ttggttgttt ttccgtgacg tcatcctcat ccatcgatag cgtcaagatt ttgtttggtt      3840
     ataattatcc atcgctaaac caacatgttc taccaaccga gccggatcag ctaaaaatac      3900
     agaacacaga gcattagtca aagtcattag gaagtaaaat taggaacgtt acttacaatt      3960
     tttccgttgg ggaccacaac cagtagtaaa ttaaacaaaa tccaccgatt agtccttctg      4020
     caatcaatta tgagtccaat ctgcatccca ggagcgtggt tgttttgatc gtcaccaggt      4080
     gcgaagcatt tgttcttgca gccaaacacc tgggaaacga agacaaaaga tctgctttta      4140
     gcgaaacata gactagatac ataaaattta gtcacacttc ccgcaaataa cacgaatttt      4200
     gataatccgg ctccgcaaca cacgttttcg agtaaataca attttcaact aaatctgtct      4260
     gacagttgtt tgttatggtt cctttttcgt tggtaaccgt gagtgaatga gttacctagg      4320
     tggtgagtga cgacttgcga cctgagtgca tgcgacgagg ggtgaatgag tgtttgtaat      4380
     tacatgtttt ctcacaattt ttttttacga agaattgttg atgaatttta ctatgctttt      4440
     tatgtgtgta cgatacgttt tcgggattta tcctggagtg tttcggcaca tgtagagcgg      4500
     tttttcgttg tgggaaattt tttcgtcttt gtgttctcgg aattcattct gaggtgaaga      4560
     caatcaggac ccacaagtgt aataaagtgg aaagcagagc gttctgattt tttcggaagt      4620
     tacttctgga gtaggacgtc tttgcaattc actagttgtt gtggaagtag gagttttgct      4680
     tctctggaat tctgatcaaa tttcaggtga tagcgttttt attgtgattg ttattcttcg      4740
     gaagttttat gtatgaatga gtttaccaac gaaataaagt ccaagttttg tagttccaca      4800
     atttattttc ctcaaatatt tttgtagtct cagcaataat ttcaagttct ttaattttca      4860
     ccatttctgc catagccaca gtagtttcaa tagtttgccc tacgaaaatt tggttgtttt      4920
     acaaccaaat tttcgtaaat ttagtagggg atga                                  4954
//
ID   Gypsy-63_CQ-LTR repbase;    DNA;    INV; 2006 BP.
XX
AC   AAWU01018550;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_CQ_;
KW   Gypsy-63_CQ-I; Gypsy-63_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2006
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 506-506 (2011).
XX
DR   GenBank; AAWU01018550; Positions   11790   13795.
XX
SQ   Sequence 2006 BP; 503 A; 532 C; 480 G; 491 T; 0 other;
     tgtaacatgg tcactctatt cgtttagttg tttttcattt agctataatt atttaatata        60
     aacaagtcca actcaatcaa gggtttgtgt cgaagctagc acatggcaag ctttagtaga       120
     acagtgctac acctcacttc ctcacacccc tgccaatccg tccgataagc caaatagtcc       180
     tggagaaagc acaacttgca ccaccacgta tgggaagact tgctgggtta aacctgccga       240
     gagaacttgc acgatcaagc cctctcggaa agcctggaat gaattagaac aggaaagcca       300
     gatgacaaat atgtaagagg gaacgagatg ccttcagtaa tattgccaaa atctgttcgg       360
     gtaaattcgt tattcgaaac tacgaaattt ctcacgaaat tacgtacttc cgttcaacct       420
     ttccctaatg acgctttctg aggaaagtta caatttctac tcgtccactt ggtcctgagt       480
     cgcggaagag gcagcagcgc cgatccagta gtcaagcccc ccggtgtgtt tagtgacggt       540
     aactcgagtg aaacgagtga tctgtagatt tgtgtagtta atctttgttc tttcctgtag       600
     tgtccaacct tagcttagct agtagtttgt gcggtccgat tctgtgtgcg aagaggaatt       660
     aaaaggtaaa gtacctagtg tgtgtgttga tgtgtgatgt gtgttaatcg tcgccaaaca       720
     gccgacgacg gcgttctgtt ctagagtcgg aaccaaccgc ctcctaccag ctcgtgctcg       780
     ccacaccgcc accaaaagcc ttagccgccc tgctgacccc gcggtctcag cgatcgagcc       840
     ccggaaggcc cactgggatt cggaagggag accacacgct acacgtggct ccagggagag       900
     ccatccattg cgccagccgt tcctgtccag ccgctggtcc agattcgccg cagaagttca       960
     ccagaccgta gacgtcggtc ctcgtggtca cgcgccgtcc aggttccaga aggaggcgac      1020
     ccgtccacca ggccgggcag ccggccaagc ccgatttcaa ccaggccgcc cccttaagat      1080
     cgcgcgcctt tcatctgctc cggaagaata tcgcaccgcg cggtgcacta gcgacgcgta      1140
     agccaatcaa cgaaaccggt ccgtgagtac tcacctataa cgtaaaaacc gcatgcgtac      1200
     gcactcgtag acgtcgtccg agttgccaaa aacacacaca cacattttct aaggctcgtt      1260
     gccctttccc gagcctagtt ccgttggtca ccgttacacc tgtgacctcc gggctaacgt      1320
     aactaagccc cagaacaaat ccgcacacag atagttagta gagagagaga gaaccactaa      1380
     gagaagagga aatgaacacg taggacacta caaacatgta acttaaacct aggttaaaaa      1440
     tgtacaatta aaaaccacat ttagcatgca atatatctcg tttttcacct cccccaagac      1500
     gttgttagcg tagttatttt ggtgaacgaa atgtctctct caccagatta gttgcacggg      1560
     tctagaggtc cctcgcttcg cattcgacgt ctccacgttt ttgttactgt tgttttactc      1620
     caagtgcaag gctgcttggg aatctcagcc tggggtcttt tcccgtcgca gcgattggtg      1680
     cgggggtaga aattatcctg tgaggatcca gagcgaacag gtgactggtt gttcggacgg      1740
     acaacgggtg gccccgttca gttttggata tttttggagt catcgcacgc gaagcggagt      1800
     acctcttacc tattttgagt cccttgaacg ttcccccatt catttcaggt ttttacaaaa      1860
     cgacccgccc tgcggctggg tctagtcggg cataaaccag gcaagtcggt cctctacgga      1920
     ggtggcgcat aaaccgtttg ctaattaaca aacccgtggg acggttatcg gacggattcc      1980
     ttcgtggcta cgatttgcgt accaca                                           2006
//
ID   Gypsy-63_DEl-I repbase;    DNA;    INV; 5850 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_DEl-I;
KW   Gypsy-63_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5850
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7082-7082 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1137..2561
FT                 /product="Gypsy-63_DEl-I_1p"
FT                 /note="RING finger."
FT                 /translation="MKMGDEEDVPETPVAICALCGKTLTVTTTFRTKCMHE
FT                 FHKACILAHSKKKTTCPSCNVVCFEKPPPPNTRGQTRSNQESSPAPSASGQ
FT                 IQESNAVQSEVIANAVSRAVRAMQNDLLAQLSAQMAQLIQTNISEHLRPLN
FT                 ENLSQRGGLVGAGNASPFGLGNIDLDAGPGPGPGSAHGSHRSGVSELSQRP
FT                 DKVAHIMNGWKIRFSGNEDGLNIDNFIYRVEALTRQTLASDFNTLCGNASI
FT                 LFEGKARDFYWRFHKTAPMPWGWDFLCQALRKQFRDTRSDVDIREAIRDRK
FT                 QKERENFDSFYEAIMQMMDGLEVPIDEYTVVEILKRNLRPEIRHEILNLSI
FT                 HSVDRLREICRRRESFLDEVRKNQGYQKTVPFRKQVAELVEEMQLDEPVEF
FT                 SDVDDEEEIGALALICWNCHKEGHRYQDCEDKRRIFCYGCGAKNIFKPSCV
FT                 RCQKNVKKGTQYRQQLGAPKNKSTNTELSQ"
FT   CDS           2459..5770
FT                 /product="Gypsy-63_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="AFLCSMPKKREKGHAVPPATGCSEKQKHEYRAEPIEP
FT                 SSSINIFPKDSSGAKTKHLVWPQLIEAQLIDSNVAAPAKPVSRQAKRMRSY
FT                 WRSVKTINTIRFKGNDKRPYAEVRLLDRIVTGLLDTGAAISVIGGNLAKQI
FT                 IRSREPFKPVMSAACTADGKKQEVVGRLRTLVTYKNISKDLDLKIIPSLSQ
FT                 DLYLGIDFWENFNLLPPDMQINEISSDSHELSAEQKARLEKVVAEFPSFAV
FT                 SGLGKTTLISHSIDIGDAKPVKQRHFPVSPAIEKLLYAEVDRMIKLGVIEE
FT                 SNSPWSSPVVLVQKPGKVRLCLDSRKVNAVTKKDAYPLPQIDGILGRLPKA
FT                 VYISSLDLKDAYWQIPLEPSSREKTAFTIPGKPLYQYKVMPFGLTNASQTM
FT                 TRLMDKVIPPSLRNEVFVYLDDLLVVSDTFEAHMRVLSTVADHVRSAGLTL
FT                 NVEKSKFCMRSVKYLGHIVGEGVIRTDPEKVSAMKDFPLPKSLKALRSFLG
FT                 MVGWYRKFINNFASVAAPLTDLLKPKKKFEMTIEGQEAFEKLKEMLCSAPV
FT                 LRSPDFTKPFFVQCDASKSGVGGVLVQKTDEGDEYPIAFVSKKLNKCQRAY
FT                 SISEQECLASIICIKRFRAYIEGHEFTVITDHASLKWLMSQTDLNSRLARW
FT                 ALKLQGFNFKIEHRSGKLNVVPDALSRVNEQEVAVLDASHGLLVDLQSPAF
FT                 KGSDYLEMQEKVSANSDKFPDLRVVDGLLYRRTQHETGELMHDTFAWKLWI
FT                 PSDLIPEVLKKAHDDPLASHGGVHKTLERIRRYYFWPGLVADVKEYIGNCD
FT                 VCKSTKAPNRVQRPPMGTAPETQRFFQRLYIDFLGPYPRSRSGNVAIFIVL
FT                 DHYSKFVFLKAVKKMTADVVIKYLQQDLFHTFGIPETIVSDNGSQFKSEPF
FT                 QKLLRQYRVNHSLTAVYAPQANASERVNRSVIAAIRSYIRDDQKDWDEHLS
FT                 SICCALRSSVHSGIGTTPYYMVFGQHFISSGSTYKLLRSLGMLEERAARFT
FT                 QEDSLELVRRKAREVMQKQNEKNERQYNLRSREVSYQEGQEVFRRNFKQSS
FT                 FVGGYSSKLGPAYLKARVRKKLGNACYELEDLQGRSVGRFHAKDLKQ"
XX
SQ   Sequence 5850 BP; 1724 A; 1096 C; 1388 G; 1642 T; 0 other;
     tttataaatt attatttatt atatcacaat tattaatatt attctggcgc ccaacgttaa        60
     ggctgatttt ttttcagtgc agtacccaga cacacctaca caaatattca cttttatcca       120
     caaagggtat aaatgttgtc ttgacaaatt cttaccttca tgttttcact tattcttgtt       180
     tttgcttaac actgactcag gcgcatcgga cagcggtaac caaaattaaa caaaacagtt       240
     ttggtaccga ccacggctga agaagaagag tagcaaaatc atgtttttat ttttacacac       300
     agtttatttg agtttttaga gtttatcttt cagccgcata ggattcatag gcccacagtt       360
     ttttttcaac agtttgccta gccacgtctg tagtaaaaca ctaaatactc attccgaaaa       420
     aaaaagagta gaatcagtca cttgtcgaac gcttggatac acttttaaaa aacttaaaaa       480
     aaaaaaaaaa aacaaattta agtcaagtgg ccacgttcat gaacaaactg gtatacttta       540
     agtgattgta aagggtgcgt ggacgaaatt gcttggataa cagttagagc gaccgctcgc       600
     tgaccacaat cgctatcgtt gttgttgtcg tttgacaaca gataagcgca gtccgtacgc       660
     atgcccaaga caaagccgtt gttgtttttt tctcgttttt ttattcttta tgcacttgac       720
     tcggtttatg tttcaatttg gttttttttg agggattagt cacgctagag gcaaattaat       780
     attgtttccg aatttgttta tattgaatta tattttattt cgttccggtt tttctttaag       840
     caaaattctt ttaattctca cttgcttctc acttttattc aatgttctcg tcgcgaagtc       900
     tgcatacaaa ctaaataagc tttaagcaga gaactttaga gcaaagcgaa aagagttcga       960
     tcagctgttc gaccactgag ggcattgaac tttaggtaga taaaacgaaa ggagagaatt      1020
     aaaagcaatt ggcagagact gtttttgtta gggtaggtta gttattaaaa tattttttgc      1080
     gtataattat atatagttaa ttattattta tctttaaaac tatatttaag tatttaatga      1140
     aaatgggtga tgaggaagat gttcccgaga ccccagtagc gatttgcgcg ctctgcggaa      1200
     aaactttaac cgtaaccacc acgtttagaa ccaaatgcat gcacgaattt cataaagcct      1260
     gtattttagc gcattccaaa aagaaaacca catgcccatc ttgcaatgtt gtttgttttg      1320
     aaaaacctcc gcctccaaat acaagggggc aaactcgatc aaaccaagag agttcaccag      1380
     ctccgtctgc gtctggtcaa atacaagaaa gtaacgcagt gcagtcggaa gtaatagcga      1440
     atgccgtatc tcgagcagtt cgagcaatgc agaatgattt attagctcaa ctgtcggcgc      1500
     aaatggctca attaattcaa acaaatattt ctgagcattt gcggccgctt aatgaaaacc      1560
     tgtctcaaag aggggggctt gtaggtgctg gtaatgcgtc tccttttggt ctagggaata      1620
     tcgatttgga tgctggtcct ggtcctggtc ccgggtctgc acacggatcc catagaagcg      1680
     gagtttccga gctatcgcaa aggcctgata aggttgctca tattatgaat gggtggaaaa      1740
     ttcgcttcag tggaaacgaa gacggactta atattgataa ttttatctat agagtcgaag      1800
     ctcttacacg acagaccctg gcatcggatt tcaacacact ttgtggtaat gcaagcattc      1860
     tgttcgaggg taaagcccga gacttttatt ggcggttcca caagacggct ccaatgccat      1920
     ggggttggga ttttctttgc caagctttga ggaaacagtt tagggatact cgaagcgacg      1980
     ttgacattcg ggaggcaatt cgcgatcgaa agcaaaagga gagagagaat ttcgacagtt      2040
     tttatgaagc cattatgcag atgatggatg gcttagaggt gcctatagac gagtataccg      2100
     tggttgagat tctcaagagg aatttgagac ccgaaataag gcacgagatt ttgaatttat      2160
     ccattcattc tgtagatcgg ttaagggaaa tttgtcgccg tcgtgaaagc tttctggatg      2220
     aggtcaggaa aaatcagggc tatcaaaaga cagttccttt tcgcaagcaa gtggcggagt      2280
     tggtcgagga aatgcagttg gatgagcctg tagaattttc agatgtcgac gatgaagaag      2340
     aaatcggcgc tctagcatta atatgttgga attgccataa agagggtcac cgataccaag      2400
     actgcgagga taagagaagg atcttttgct atggctgtgg ggcgaaaaat atttttaagc      2460
     cttcctgtgt tcgatgccaa aaaaacgtga aaaagggcac gcagtaccgc cagcaactgg      2520
     gtgctccgaa aaacaaaagc acgaatacag agctgagcca atagaaccgt caagtagcat      2580
     aaacattttt ccgaaggatt cgagcggggc gaaaactaag catttggttt ggcctcaact      2640
     aatcgaagct cagcttattg atagtaatgt tgcagctcca gctaaacccg tatctaggca      2700
     ggcaaaacgc atgcgatcat attggcgatc cgtaaaaact ataaatacaa tccggttcaa      2760
     agggaatgat aaacgacctt atgctgaggt tcggttgttg gacaggatag ttacagggct      2820
     gttggataca ggagcagcaa tcagcgtgat cggcggaaat ttggcaaagc aaattattcg      2880
     aagtagagaa ccttttaagc cagttatgtc agcagcttgc acggcagatg ggaaaaagca      2940
     ggaagtggtt gggcgattgc gcacattagt tacttataag aatattagta aagatttaga      3000
     tttaaaaata ataccttctt taagccaaga tttatattta ggaatcgatt tttgggaaaa      3060
     ttttaatctt cttcctccgg atatgcaaat aaatgaaatt tcgtccgatt ctcatgagtt      3120
     atctgcggag cagaaggctc gtttggaaaa ggtagtcgct gagtttccct catttgctgt      3180
     gtcagggctt ggaaagacca cacttatttc gcattctata gatataggcg atgcaaaacc      3240
     agttaaacag cgccatttcc cggtatctcc agcaatcgaa aagttattgt acgctgaagt      3300
     agaccgaatg attaagcttg gagttattga ggaatcgaat agtccttggt cttctccagt      3360
     tgtccttgtt cagaagcctg gcaaggtgag attatgtctc gacagcagga aagtcaatgc      3420
     tgtgacgaaa aaggacgcgt atcctcttcc acaaatcgat ggtatattag gcagactacc      3480
     caaggcagta tacatttcca gcttggactt aaaggatgct tattggcaaa taccgctaga      3540
     gcctagttcc agagagaaga cagcttttac cattcccgga aagccgctgt atcagtataa      3600
     ggtcatgcca tttgggttga caaacgcatc ccaaacaatg acccggctca tggataaggt      3660
     aattcctcca tcgctgagaa atgaagtctt tgtgtatctg gatgacctgc tggttgtgtc      3720
     agatacattt gaagctcaca tgagggtttt gagtacagtg gctgatcatg ttcgctccgc      3780
     tggattaact ctaaatgttg agaaaagcaa attttgtatg cgatcggtca agtatttggg      3840
     gcatatagtt ggagaaggcg tgattcgcac agatcctgaa aaggtatccg ccatgaagga      3900
     tttcccattg cccaaatcct taaaagcact cagaagtttt ctcggcatgg tggggtggta      3960
     taggaaattt attaataatt tcgcttcggt ggcagctccg cttactgatc tgctaaagcc      4020
     aaagaaaaag tttgaaatga ctattgaggg ccaggaagca tttgagaaac tgaaagagat      4080
     gctgtgttcc gcaccagtgc ttcggagccc agactttaca aaaccgtttt ttgtgcagtg      4140
     tgatgccagc aagtccggtg tgggtggagt cctggttcag aaaacggatg aaggggatga      4200
     atatccaatt gccttcgtgt caaagaaatt aaataaatgt cagagagcgt actcgatttc      4260
     tgaacaggaa tgcttggcct caattatctg catcaaaaga ttccgcgcgt acatagaagg      4320
     acatgagttt acggtgatca ccgatcacgc atcccttaag tggcttatgt ctcagacgga      4380
     tctaaatagc cgtctggctc ggtgggcatt aaagctccaa ggctttaatt ttaagattga      4440
     gcatcgtagt ggcaaactaa atgttgttcc cgacgcgttg tccagagtga acgagcagga      4500
     agtggcggtt ttagatgcca gccacggatt attagtagat ttgcaatctc cggcgtttaa      4560
     gggaagtgat tacttggaaa tgcaggaaaa agtcagtgcc aacagcgata aatttccaga      4620
     tctaagggtt gtggatggtt tgttgtaccg caggactcag catgagacag gagagcttat      4680
     gcatgacacc ttcgcgtgga agctttggat tccaagcgat ttgattccag aggtcttaaa      4740
     gaaagcccac gacgacccac ttgcatcgca tggaggcgta cacaagactt tagaacgaat      4800
     tcgtaggtac tacttttggc caggactagt ggcagatgtc aaagaataca ttggtaattg      4860
     cgatgtctgt aagagtacaa aagcgccaaa tagagtacag cgaccgccga tgggtaccgc      4920
     tcccgagacg cagagatttt tccaacggct ttatattgat ttcctcgggc cataccctag      4980
     gtctcgatct ggtaatgtgg ccatatttat agtgctggac cactactcaa agtttgtttt      5040
     cctgaaggca gtgaagaaaa tgacggccga cgtcgtaata aagtatctgc aacaagactt      5100
     gtttcatact tttggaattc ctgaaacgat tgtgtcagat aatggttctc aattcaaatc      5160
     agaaccgttt caaaagttgt tgaggcaata tagagttaac catagtttga cagcagtcta      5220
     tgcgccacaa gctaatgcgt ctgagcgagt caatcgttca gttattgcgg ccataaggtc      5280
     ttatattcgg gacgaccaga aagattggga tgagcatttg agtagtattt gctgtgcgct      5340
     gcgttcatca gtgcattctg gaatagggac tacgccgtat tatatggtgt ttggccaaca      5400
     ttttatttca tccggttcaa catataaatt attgagatcg ctgggtatgt tggaggaaag      5460
     agccgcaaga tttacgcaag aggactcctt ggaattggtg cgtcgaaaag cccgagaggt      5520
     gatgcagaaa cagaatgaga agaacgagcg gcagtataac ttaaggtctc gtgaggtgtc      5580
     ttaccaggaa ggtcaggaag tatttagaag gaattttaaa caaagcagtt tcgtgggagg      5640
     atacagttct aagttagggc ccgcttatct taaggccaga gtccggaaaa aactgggaaa      5700
     tgcctgctat gagttagagg atttgcaagg gcgatcagta ggacgtttcc atgccaaaga      5760
     tctaaaacag taacgaagcg ttgctaccag ctttggttgg atctgttttg gggttgtcgg      5820
     accccagtcc agatcttaag ggggggcttt                                       5850
//
ID   Gypsy-63_DEl-LTR repbase;    DNA;    INV; 2188 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_DEl-I;
KW   Gypsy-63_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2188
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7043-7043 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 2188 BP; 770 A; 342 C; 479 G; 597 T; 0 other;
     tgtagcgctg gtagcataaa ctgaacccag ttgctggcgc catctacgag caggtggcgg        60
     tatcagttcg tggcaaatgt ggcgggtcaa cagggctaag tgtcaagcac tgatctggag       120
     agagtatttc tattctttcg ctgttaaggg gcttgccgcc ataattgggc ggcatcagcg       180
     ttcttttcct tttgagcctt ccaccagagc ggttgttacc acagtgaaaa gttttattta       240
     tggtgctaga aatattcgat cggaaggaag agaggcggtg tatagcacac agccaataat       300
     tcaaagtgca gataaaggca acgaaactag gtgagttatt ggggtaaagg gcggttaaag       360
     agattttttt ttggtagacg cttgcataga aaaaaaaaag gaaaaaaatg tgatggcaaa       420
     aatataagaa atttatttgt tcacattagg cctgcagctt tgctgtattt tttttccgca       480
     acacccgaac gaagtgggaa cactcaagcc gatcgtcgaa atccacctac gcctggagtt       540
     cttcgaggga agggaaacag tggtaacgcg accgcctcgc aaagcgagcg gaggagatcg       600
     acggaaagtg ctaaataatt gaattttaaa ttatgtaact tcccatgtcc cgacccgaac       660
     taaggcgtaa aaagtaattg tggcccgtgg tggcagaaaa aaaaagaaat atcggcagtg       720
     caaattcggc ggtgtaaaaa aaagggaaac gaaaagcaaa aaaaaaataa gggaagaaat       780
     taacccaaaa atgtagaaaa tttaagttca agaggaaaga aaaaaaagga agagaaaaag       840
     ggagaaaaag aaaattcaaa aaaaaaaaaa aaaaaaaaga aggaaaaaag catgtgttaa       900
     aataattata aaatttagtt attaagattc agttttgata tttcttttat atttgtacat       960
     gtgagagtga tttgagtttg tttgtcattt tacgccgatg taaaaaaaaa atgtaaattc      1020
     gcctccagtc cccttttgaa agtgaaagaa aaagagaaga aataatcccc agacttgtct      1080
     gccccacgat ttgttttacc aaaaaaaaaa aaaagtgaat tcttttgcag cgtttcagcg      1140
     accttcaaga aagcgctttc ttcgttggat ccgcagcgac aataatggtg agcgaaaaca      1200
     tatacatttt tatttaaatg tttaaaaaaa aatgaaaagc ataatgattt cgtggtgcag      1260
     agtaaaatcg cgaggaaagc tattaaagga gtaaaagaaa agcaaagaga atatagattt      1320
     tgggaaaaaa aagagaaaaa aagtagtttt tttttaactt tcaaaaggaa gatagaaaga      1380
     aatggaagaa aaagtataac taaaactatt gagtggaatt cgagtgggaa gagacaaagt      1440
     aactcgagtc accctgcatt ctggtaggcg aatatcgtaa atggtcaggt tcttagctaa      1500
     ctaaattaat ttttttgcct cctccgtaaa gatatattta tttttgttaa atcaaatacc      1560
     ttaggtaatt aagaactaaa ttaaattaga acatcacgtt attattaaga tctgcaccca      1620
     aatcataatt tatattgtct attatacctt atcttacatt ttataatttt tgctatttgt      1680
     ctcttattaa tatatatgtg tatctattaa gaaatcatgg agtgctccca aattttagtt      1740
     tactgttttt tttttagtcg ataaataaat ttttataatg ttttaaattt taatgtttgt      1800
     cctcggcgga cgatgccttg attaaccaat gccgcaaagg ggctgttccg ggagtgaagg      1860
     gaagggggaa cggccgacgg aagggtgggc aaagccagcc tcattaacag cagaggtgga      1920
     gatgcggtaa cagatcgagt taagtgcctg gcctctcttg gccaactgca atagcccaaa      1980
     aaatgtagga tgtgttcgaa gtagtttttt tttgcttgtc gcagcacgca aattgaattt      2040
     gttaataatt agttaggccg ccttgatttc tgagcaagaa caacaccccc aattgctgac      2100
     gagccagagc cgaggtagac attgcgtgcg ctcagtgatc aagcccaaca tcaggccgca      2160
     aaacaaaaat ttattaatgt tcgttaca                                         2188
//
ID   Gypsy-63_DWil-I repbase;    DNA;    INV; 7052 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_DWil-I.
XX
NM   Gypsy-63_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7052
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1895-1895 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           925..2418
FT                 /product="Gypsy-63_DWil-I_1p"
FT                 /translation="MTKDNWVKAAVLQQGGIHAAGSDAPTASTSSASTANR
FT                 IEALSIQGLDVAIQTILSSQLQEIVKQLNHSQSGHIPFRDQTAGVQDDWHE
FT                 LDKVPDIVKNLDKFSGSREDFSTWFTTATKLMELYAPIQGTPKYYAILMTI
FT                 RGKITGHANTLLKVYRTALHWGAISQCLLTEYTDRRDLSTLEYQLFTMTQK
FT                 GTSIHDFYFAVHQQMSLILDQIETMGYSPETMEAMAKQVRDRALDTFIRGL
FT                 NGDLSDRMSLAEPKDLRHALQLCNMLDNKRARNIIGHRDIRPPVGPKPQQY
FT                 AKINVQPQRSFIPAIPPKPYNNNNFYNQKPMQNVFIPQNRFPQSNNPVFFN
FT                 APPRPFAPKPQPAPTPMDVDGSILTKKVNYMNKPNVNLPQQFAPKRVNQST
FT                 VNFPNKVQRQFHIETGPSGEQYITIPPQEEHYSDMSDYQAAYQGQEDPFES
FT                 VPYSEVQQYQQQEQYFTSQGDNSELVPQNKEETRPQSQEPQQPQIEDTVNF
FT                 LG"
FT   CDS           2409..5540
FT                 /product="Gypsy-63_DWil-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, zinc-finger and integrase."
FT                 /translation="FFRLKCSSLPYFVVRDKDGTSYNFLIDTGSNKNYVQP
FT                 EIAKNIKTNEHKFYANTVSGRILITSHIHLGLFNEPNKPITFFLLPNLNPF
FT                 HGILGNDSLRELNAIIDVGKDLLYVNNSHVVKVKQMRAHQVHTLKSDELTN
FT                 QQKLGLKALQEEYKSLFADPNKKLTYATNVQGEIRTTTDTPVYTKHYPYPA
FT                 SLREVVEDQLQELLRDGIIRPSRSPYNSPVWIVPKKSDSLGNKQYRMVIDY
FT                 RKLNAVTVSDRYPIPEIGEMVAQLGNNKYFSVLDLKSGFHQISLKESDIEK
FT                 TAFAVNGGKYEFTRLPFGLKNSPSIFQRALDDILRDLIGKICYVYIDDIII
FT                 FSKSEEEHFRHLALVFSTLSKANMKVQVDKCKFLRHSVDFLGVVISREGVK
FT                 TNPEKIQAIKKFPIPKNLKQLRSFLGLASYYRRFIKDFAKLARPLTALLRG
FT                 EHGRAKKNVSSKIEIRFGEAETDAFEKVKNALVSQDVMLAYPDFKQEFHLT
FT                 TDASNIALGASLEQNGRPITFLSRALSKAEENYATNEREMLAIVWALDKLR
FT                 MYVYGKSKVIIYTDHQTLTYALSPKNNNIKLKKWKSYLEEYNYELKYKPGS
FT                 SNVVADALSRNPTNINASSTSATVHSDESSGHELIPAMEVPINVFKNQLFI
FT                 LTGDNESTTFEIPFPTYHRHTIVRSNYSENDLVTILKEKMDPRIVNGIFTS
FT                 ESIMGKIQQIFPEHFRNYKARFTQIQTVDVHDQTQEQEIIIKEHLRAHRNS
FT                 IENKKQILSEYFFPGMKKKVEAIVNSCQTCKLSKYQRHPPNQEIQPTPIPT
FT                 YPGEIIHIDLYSTQNKIILTAIDKFSKYAQVKLVNSKAAEHLKVPLRELLI
FT                 AFGMTKTVVMDNEKALNSASIKFLLNNQLGIQVHTTPPYTSSSNGQIERFH
FT                 STYTEIMRCLKLEHPEMEFEDLIFKAVDEYNKTIHSTTNKKPIEAFFATNL
FT                 IHTPEKLALEREKISENILKKQNKDLGYHNKTKKPIKIYDPGETIYVRINK
FT                 RLGSKLTSRYKKEIVAEDLNTKIKTRSGRIVYKNHLKY"
FT   CDS           5547..7040
FT                 /product="Gypsy-63_DWil-I_3p"
FT                 /translation="TSSSDRLLMLPLCWGHTTILDYTKSRVVMLETGLAAR
FT                 QNGTFKIVHVIELEKYQMSISVLKEVVKNSTNLSPYQPFLAYEITRIQNEL
FT                 RRLQPMQFRNKRSLDILGTAWKWLAGTPDHEDHMIVVNKINEQLVNNNRQV
FT                 VINNLIENKINDLIKITNTILIRGKPESNNKSKEIEITKFKLSLLREEITN
FT                 IIYAIDWAKANTVNSLILSSTEIDFIETIKEESLTFINIEELIEFAEVSVA
FT                 SDGKSLLYIVSLPRVINEICKQILAIPIKYQKFIEEIDYENIMKCNKKYFG
FT                 LTNKSNCKIHNGKTICKLEDLTNLENSKCIGAYLQRRNPQCKVINNQHVKS
FT                 HSEIMPGTLLLNQFQGDISINGENITLEGTFIIQAENATVIIEDSWYIVKT
FT                 RFEAEVQPPLLQLLSNKQQRGEKLSLEMIKELHINNTNNLERIQRNNLIMS
FT                 SSNWIILTLLAAAMITYCIIKKYCSHGTGNHGPPMEVSIGPVQYVVATEDV
FT                 RT"
XX
SQ   Sequence 7052 BP; 2617 A; 1445 C; 1245 G; 1745 T; 0 other;
     ggcgcccgag cagggaccct gctaaataca acgtgatcgt gagttagtga aagataccag        60
     tgattcgtga ccaaaaaacg cgttaaaggc ctttagagtc agtgaaacaa aaacactata       120
     tcgaactata ccacgaatca gacagggtca ttttaatcgc tgcgaattcc tctaagacta       180
     gttcggagga aaactgaaaa cccaaaagtg tttgcccagg agcgttagta ccttcgacgt       240
     tggaaaagcg agacctccta caaaccgatc agtaaaaagc accgaggatg atagcattaa       300
     cgtaagttaa gtaaaataaa cttaagcaaa agaaaaccga aataaaattt ttattgtgaa       360
     aacacagtgg gtgaaaaaat tttgtgaatc aatatcaaga agctaaaaaa ttttttttat       420
     ataaaatcct taattaaatt ttttccccac tcgaaaaaga aaaagaaaat aatgaaaaat       480
     taagaaagaa aataataata agtattattc aaaaaagaaa aagaaaataa tgaaaagtta       540
     agaaaaaatt aataagtaat attaaaaaaa aaaagtagag aaaataattt tgaaattttg       600
     gaaaaaatat ttttataaaa gataaccaca taatattgaa aattttgtat aataccacaa       660
     gccatttcca tccacgatta gcggacatac cgctatattt ctatcaatcc aagattagcg       720
     gacataccgc tatattttta tcaatataag caaaaaattt aattttcgcg gactatattt       780
     ttcgtattcg cgataccgta acaccttgaa ttaattttta tcaatataaa caaaaaattt       840
     aattttcgcg gattatattt ttcgtattcg cgataccgta acaccttgaa ttaaccctaa       900
     ttaaaaaaac aatccatttc caaaatgact aaagacaact gggttaaagc cgcagtcctt       960
     cagcagggtg gtattcatgc agcaggctct gatgccccga cagcatccac ctcaagtgca      1020
     tcaaccgcaa atagaatcga agcactgtca attcagggac tagatgtagc tatccagaca      1080
     attttgtcgt ctcagttaca ggaaatagtg aaacaattaa atcattctca gtcaggacat      1140
     atacccttta gggaccagac agctggcgtt caggatgatt ggcatgaact agataaagtg      1200
     ccagacatcg taaagaatct tgacaaattc tcaggtagcc gtgaggattt ctcaacatgg      1260
     tttactaccg ccacaaaatt gatggaattg tatgccccca ttcagggaac acccaaatac      1320
     tatgcaattc ttatgaccat tcgaggaaaa attacaggcc atgccaatac attgttgaaa      1380
     gtctatcgca ccgcattaca ttggggcgca atctcgcagt gtttgttaac tgagtacacg      1440
     gacagacgag atttaagcac tttagaatat cagctgttta ccatgaccca gaagggcacc      1500
     tccattcatg acttctactt cgcagttcac caacagatgt cgctaatact agaccaaatc      1560
     gaaacgatgg gttattctcc cgagactatg gaagccatgg ctaaacaggt cagagatagg      1620
     gctctagata ccttcatcag aggtctgaac ggagatctct cagacagaat gagcttagct      1680
     gaacccaaag atctgaggca tgcattgcaa ttgtgcaata tgttggataa taagagggct      1740
     agaaacatta tcggccatcg tgacattcgt ccacctgtag gaccaaaacc ccaacagtat      1800
     gctaaaatta acgtgcaacc tcaacgatcg ttcataccag caattccacc caaaccttac      1860
     aacaacaaca acttttataa tcagaaaccc atgcaaaacg tgttcattcc acaaaataga      1920
     ttccctcaat ctaataaccc cgtatttttc aacgcaccac cgaggccatt tgccccgaaa      1980
     cctcagccgg caccaactcc aatggatgtc gacggctcta ttttaaccaa aaaagttaac      2040
     tacatgaata aaccgaatgt taatttacca caacaatttg ctcccaagag agtcaaccag      2100
     tccaccgtaa attttcccaa taaagtgcag aggcaattcc atatcgaaac cggtccgtca      2160
     ggtgaacaat atatcaccat accgcctcaa gaagagcatt actccgatat gtccgattat      2220
     caggctgctt atcagggcca agaagaccct tttgaatcag tcccatattc tgaggttcaa      2280
     caatatcaac agcaggagca atattttacc tcacaaggag acaactcaga gttagtccca      2340
     cagaacaaag aggaaaccag accacaatcg caggagcctc aacaaccaca aatcgaggac      2400
     accgttaatt ttttaggtta aagtgttcct ctttgccgta ctttgttgtc cgggacaaag      2460
     acggaacctc atacaacttc ttgatagata ccggctcgaa caagaactat gtccaaccag      2520
     aaatagcaaa aaatataaaa acgaatgaac acaagtttta cgcgaacacc gtaagcggtc      2580
     gcattttaat aaccagccat atccatttgg gtttatttaa cgaacccaat aaaccaataa      2640
     cattcttcct attacctaat ctgaatccgt tccacggaat tctaggtaat gactcactaa      2700
     gagagttaaa cgctatcatt gatgtaggga aagatctact atacgtcaac aactctcatg      2760
     ttgttaaagt gaagcagatg cgagcccatc aggtccatac cctcaaatca gatgagctca      2820
     ctaatcagca gaaattagga ttaaaggcgc tccaagagga gtacaaatcg ctattcgcgg      2880
     acccaaataa aaaattgact tatgctacta atgtccaagg agaaatccga acgacaacag      2940
     acactccagt ctacaccaag cattacccat atccagcctc tctaagagaa gtagtagaag      3000
     accagctaca agaattatta cgagatggta taatacgacc ctcacggtcg ccctataatt      3060
     cccctgtgtg gatagtccct aaaaagagtg acagccttgg gaataagcaa tataggatgg      3120
     tcatagatta tagaaagctc aatgcagtta cagtttcgga taggtatcct atccccgaaa      3180
     tcggagaaat ggttgcgcag ttgggcaaca ataagtattt ctctgttctt gatctaaaga      3240
     gcggatttca tcagatttcc cttaaggaat ctgatattga aaaaacggca ttcgccgtga      3300
     atggagggaa atacgagttc acgagactcc ccttcggcct aaagaattcc ccatcaatat      3360
     tccaaagagc tctcgatgat attttgagag atctcattgg aaagatctgt tacgtctaca      3420
     tcgacgacat aataatattc agtaaatcag aggaagagca tttccgacat ctagctttgg      3480
     tattttctac cttgtccaag gcaaatatga aggtccaagt agataaatgc aaattcctaa      3540
     gacatagcgt tgacttccta ggcgtagtga tttcaaggga aggagttaaa accaatccag      3600
     agaaaatcca agccattaaa aagttcccta taccaaagaa cctaaaacaa ctaaggtcct      3660
     tcctgggatt agctagttat tacagaagat ttatcaaaga ttttgctaaa ttagctagac      3720
     ccttgactgc gttattgaga ggagaacatg gcagagccaa gaaaaatgtc tcaagtaaga      3780
     tcgaaatccg attcggtgaa gccgaaaccg atgcctttga gaaagtgaaa aatgcattag      3840
     tgtcacaaga cgttatgcta gcataccctg actttaaaca agagttccat ctaaccaccg      3900
     atgcctcaaa catcgcacta ggagcttctc tagaacagaa tgggagaccc attacatttc      3960
     tttcccgtgc gttatccaaa gctgaagaaa actatgccac aaatgaaaga gaaatgctag      4020
     caatagtatg ggcattggat aagctaagaa tgtatgtata cggcaagtcc aaggtgatca      4080
     tttacaccga ccaccagact ctcacttatg ctctcagccc aaaaaataac aacataaagc      4140
     tgaagaaatg gaaaagttac ctggaggaat acaactacga gttgaaatat aaaccgggta      4200
     gctcaaatgt cgtagcagac gcactctcta ggaaccctac taacataaat gctagtagta      4260
     cgtcagctac agtccacagt gatgaaagct cagggcatga actcattcca gcaatggaag      4320
     tacccatcaa tgtctttaaa aaccaattgt ttatcctcac tggtgataac gaatccacca      4380
     ctttcgaaat accattcccc acataccaca gacatacaat agtgagaagt aattattctg      4440
     aaaacgatct tgtaactatt ctaaaagaaa agatggatcc gagaatagta aatggtattt      4500
     tcacttctga aagtatcatg ggtaaaattc aacaaatttt tccggagcat tttaggaatt      4560
     acaaggcaag attcacccaa attcaaactg tagatgtcca tgatcagacc caagaacaag      4620
     aaatcataat taaagaacac cttagagcac atagaaattc catcgaaaat aaaaagcaaa      4680
     ttttatctga gtattttttc ccaggtatga agaaaaaagt agaagcaata gtaaactctt      4740
     gccaaacatg taaactctca aagtatcaac gacaccctcc gaatcaagaa atacaaccaa      4800
     cccctattcc gacatatcca ggcgaaataa ttcatataga tttatattcc acccaaaata      4860
     agatcattct aacagccata gacaaatttt ctaagtatgc gcaagttaaa ctcgtaaact      4920
     caaaagcagc agaacatctt aaagtgccct tacgtgagtt attgatagcc ttcggtatga      4980
     cgaaaaccgt ggtaatggat aacgaaaaag ctttaaattc tgcatcaatc aaatttcttt      5040
     taaataatca gttagggata caagtccaca ctaccccacc ttatacttca tccagcaacg      5100
     gccaaataga aagatttcat tccacatata cggaaataat gagatgcttg aagttagagc      5160
     accccgaaat ggaatttgag gatttaatat tcaaggctgt agatgaatac aataaaacaa      5220
     tccacagtac aaccaataaa aagccaatag aagcattttt cgcaacaaat ttaatccata      5280
     caccagaaaa attagcactc gaaagggaaa agatttcgga aaacatctta aagaaacaaa      5340
     acaaagacct agggtaccat aacaaaacaa aaaaacccat aaaaatttac gatccaggtg      5400
     aaaccatcta cgttaggatt aataaacgat taggttcgaa actaacgtct agatacaaaa      5460
     aagaaatagt agccgaagat cttaatacca aaattaaaac caggtcaggc aggatagttt      5520
     ataaaaacca cttgaaatat tgataaacat cctcttccga cagattgctt atgttaccac      5580
     tttgctgggg tcacacaacc atattagact acactaagtc aagagtggtc atgttggaaa      5640
     ccgggttagc cgcgcgccag aatggaacct ttaaaatcgt ccatgtcatc gaactagaaa      5700
     aatatcaaat gtccatatcc gttttaaaag aagtcgtcaa aaattcgaca aacctaagtc      5760
     cgtatcagcc ttttttggcc tatgagataa cgcggataca gaatgaactg aggaggcttc      5820
     agccgatgca gtttagaaac aaaagatcgc ttgatatact tggcacggcg tggaaatggt      5880
     tagcgggcac acctgatcac gaagatcata tgattgtggt aaataagatc aatgaacaat      5940
     tggtaaacaa taatcggcag gtcgtaatta ataatctaat agaaaataag ataaatgatt      6000
     taattaaaat aactaatacc atattaatta gaggtaaacc cgaatctaac aataagtcaa      6060
     aagaaattga aataaccaaa tttaaattga gtcttctaag agaagaaata acaaatatta      6120
     tctatgcaat cgattgggcc aaggccaata cagtaaattc actaatatta tcctctaccg      6180
     aaatagattt catcgaaaca attaaagaag aaagtttaac atttataaac attgaagaat      6240
     taatagagtt tgctgaggtc agtgtagcct cagatggtaa atcactcctt tatattgtta      6300
     gccttcccag agtaattaat gaaatttgta aacaaatcct agcaatacca attaaatatc      6360
     aaaaatttat agaagaaata gactatgaaa acatcatgaa atgtaacaag aaatatttcg      6420
     ggttaaccaa taagagtaat tgtaaaattc ataatggtaa gacaatttgt aaactggaag      6480
     atctgactaa tttagaaaac agtaaatgta taggagccta cttgcaaaga aggaatcccc      6540
     aatgtaaggt catcaacaat cagcacgtaa aatctcattc ggaaataatg cccggtacct      6600
     tgctgctgaa ccaattccaa ggggacatca gcatcaatgg agaaaacatc accctagaag      6660
     gcaccttcat aatccaagcg gaaaacgcga cagtcataat agaagactcc tggtatattg      6720
     tgaagacacg ctttgaagcc gaggttcaac caccgctgtt acagttacta tcaaataagc      6780
     agcagagagg cgaaaagcta tcgctggaaa tgatcaagga gttacacatc aataatacta      6840
     ataatctgga gcgtatccaa agaaacaact tgattatgtc ttcgtcaaac tggattattc      6900
     taactcttct agcagctgcg atgataacat attgcatcat taaaaaatac tgcagccacg      6960
     gaacaggcaa ccatggtcca ccaatggaag tctcaatcgg gcccgtccaa tatgttgttg      7020
     cgaccgagga cgtccgcact taaaggggga gg                                    7052
//
ID   Gypsy-63_DWil-LTR repbase;    DNA;    INV; 611 BP.
XX
AC   .
XX
DT   04-NOV-2011 (Rel. 17.09, Created)
DT   04-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-611
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1896-1896 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 611 BP; 198 A; 166 C; 99 G; 148 T; 0 other;
     agttaagcac ttctatcaca actcatacca taacatagaa gccataaacc caagtccgtc        60
     aacacatgcc cattaaccgc atgcccattg gccgacccta tttcatcatc acatgcaata       120
     cccattggtc aaccccactc aatcgtcaca tgcccatttg tcgcatgatc gccaatctca       180
     agtaacagtc cgatcgctag gataaacaat aagcctgcac cccattttcc caggccctag       240
     aagaatggtg tcgggttcgg tgcatacgca gaatcacgcc acaaatttcg gcaataaaca       300
     aagaatggtc ctgaacactt gtgtaaacaa agaatggtcc cacgcactta aagtggacta       360
     ttggactcag ccaacgccgc cgcctgcgac gacgtcgatt acccaagcct tcatccaaca       420
     taattgaacc atagcaaatc agtcttgagc ctaagtacaa accaaccggt aacttcgctt       480
     aaactccgcc gaattcgctc accaaagtca gcatctttca gttataatta aaacatactg       540
     tattgtaata aaagtgactt tataaataaa aattcatttt tttaacccgt gagtgaagga       600
     agtgtttaat t                                                            611
//
ID   Gypsy-63_LMi-I repbase;    DNA;    INV; 6799 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6799
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(298..528,547..1122,1064..1627,1609..2139,
FT                 2037..2309,2273..2653,2723..3511,3469..3699,
FT                 3672..4466,4507..4758,4762..5367)
FT                 /product="Gypsy-63_LMi-I_1p"
FT                 /translation="MADQIKISPSECGSERTGSDAGSPTRSEGAESKSIGE
FT                 FEVSLPPPNQLEKMMLMIQDMNSQNREMNNSLNSKIIVNQIGEMSSQISSK
FT                 IINMDSKIGELNDEIKNQRSVLMGEINEIKEKIVSQNENFSDRLNGFEIQV
FT                 KETDQKLTDRITEVESDLGERIDAVQSGCKREMKETVSKLETVKKSIDNVA
FT                 LCQAEELKTVRCEVKSVSKEVEGIKNSFDNIITNPLGTSQVIASPNIKSFN
FT                 GSEKYHVVDFLATCKNYFVAGMSDEAKSISWPHVKIISLQACLMRQKVKFV
FT                 KRQLDGSAQTWANQHAADVTDFATFEALVLNKYWSQKKQTRLQNEFLNGDY
FT                 YRKDWGKLREFCEWELKKLVHLDKPLSALIVISTLIRRMPDWLQWDLKHSP
FT                 TDCVESFLDYVERMDFAMHHRNRGGNNSGGNFQNNEKGQKQWRNAGNNGGQ
FT                 NNANTNDQWQGNRPVAGKLKTLPTVVREGSERRKRNRAWNKVKNMNHDFSG
FT                 NESKGDLGVFNVEAILGSEELWNGWREHDLLKEKQRRRILETSGKDSGIIS
FT                 SKNSCVDESIGLAVLDLGSQEGVKVTAKFDSDGVDVREAGVQVMEPDAADV
FT                 RNHDEESCARRVCLPCSRRLEETLRRTRRLALWCQTSRRGVVCTESLFTLQ
FT                 QEAGGNVTADATAGTLVSDVNSCSESVDVTGNCSEIREFIIIDDEQQVAVD
FT                 DINTDWLSKEESEFMLVITSRKRNLVYASDYISKAKFMIQLFPQEWASEKF
FT                 DVARKLQVLSESQPEFRKVFNEIFKDDLELESPSETVIGTLCVDSFKEIER
FT                 DLLAETELRKEPVEKVQPLIKVEINGTNVDCLVDSGSNVCCVSLSFLNMWT
FT                 YKKEVIFELGIDGVMYAHSFFIVDNLCTNILVGSDFLTKYAGNLNYSDKYL
FT                 ELNNGAYRKRVVFNGHLAREGIVASVNMDNEITELELIDSIRKKVDETKGL
FT                 TEENKVELFDLLCEYQDVFSDRPGKIIDFVYHMQVKVHDPIKVRPYPVPMA
FT                 KRDAVKAELQRQLDWGVIEPSRSEYCNPIVVVKKRDNTVRIVLDARGINKI
FT                 IVKETDHPGNMDELIQNFRNVRLMTSMDLTAGFWQVGLAEECRKTPRFCLR
FT                 VARINIRDTAFLFEGCSYQYKVVPFGLCTSVAVFVRAMNHVLGQALMSQIT
FT                 VYVDDILVATSTWQEHCGRLEDVEFSQLCKEKEVLTALQRKGMTLKLKKCE
FT                 FVKAELDFLGHRLSAEGIFPKADNLAAISKCAIPRNRKQLKSFNGMCSYYR
FT                 KFASNQCLNSPNLSRLLKKNVTWLWTKECDDDFKAIKDCLCNSNILHYPDM
FT                 TLPFRLVTDSSNYGVGAALLQRVEVNGVTEDRTISFASRLLSKHERNYGIT
FT                 EKELLSIVWGFKKYRIYLEGRETVVLTDHKALSFLQECKLLNERLTRWAMF
FT                 LQQFQYSVEYIKGTDNVIADALSRLPVEGGDDGMREDGTEEYQMYLQGCAE
FT                 NQNADPALKLVKSLFGTKGNEKLQRFYKIHKGVLFRRKTRARKNGNFVFQK
FT                 SRSKANTVHTFKSWTLWAAEMLRGTGLCALYNMARKVRKQLSLYVKEYGTV
FT                 ANQGAMQSIIPDKVLDLLAIDIFGPLPTGRGGAKYVLLAVDVFSKYVKLYA
FT                 MKKATSTVIKSKLEKDXFAKLGKPKAILSDNGSQFVSKLWENFMSTTGVKH
FT                 VRXSVGHPAANPTERYMRELGRLARTYCSHKHTKWAEYIPAFEDVMNSVKV
FT                 VPQVSRRLKLCCEKNRQICWQNW"
XX
SQ   Sequence 6799 BP; 2197 A; 1080 C; 1755 G; 1762 T; 5 other;
     attgggggct agtgtccggg atttctagat tgctacgcag ctaggcccga aggtcaggga        60
     aactaggagt gagctacaac aagtgaggaa tgctaccgtc gaacgcaagg agccaacaca       120
     caacatagca tcgcaccgcc cagccgccgc acaccacgca gctacagcgc cgagcagaag       180
     cagccagcat ccaaggagcc tacaccactt cacaccaacg gcagcaagca ggacgcagta       240
     aagttaagtg gggcagcatt tgcaattttt tgcgttgttt tctgcagtgt gttagccatg       300
     gctgaccaaa ttaaaatatc gcccagtgaa tgtgggtcag agcgcacagg tagcgatgca       360
     ggtagtccta caaggtcaga gggggctgaa agtaaatcca ttggggaatt tgaggtcagt       420
     ttaccaccgc cgaatcagtt agaaaaaatg atgttaatga tacaggacat gaatagtcaa       480
     aatagagaaa tgaataatag tttgaatagt aaaataatag tcaatcagta gtgaaatgaa       540
     tagtaaattg gagaaatgag tagtcaaatc agtagtaaaa tcattaatat ggatagtaaa       600
     attggtgaat tgaatgatga aattaaaaat caaagaagtg ttttgatggg tgaaattaat       660
     gagattaaag aaaaaatagt atctcaaaac gagaatttca gtgataggtt aaatgggttc       720
     gaaatccaag ttaaggaaac tgatcagaaa ttaacagata ggattactga agttgagagt       780
     gatttgggcg agaggataga tgctgtgcag tcggggtgca agagggagat gaaagagacg       840
     gtatcgaagc tagaaacagt aaaaaagagt atagataacg tagccctgtg ccaggctgaa       900
     gaattaaaaa cagtaagatg tgaagtgaaa agtgttagca aagaagtgga gggcattaaa       960
     aattcttttg ataatatcat tacgaatccg ttagggactt cacaggtaat tgcaagccct      1020
     aacatcaaaa gttttaatgg gagtgaaaaa tatcacgtag tagatttctt ggccacatgt      1080
     aaaaattatt tcgttgcagg catgtctgat gaggcaaaaa gttaaatttg tgaagcggca      1140
     gcttgatgga agtgcacaga cgtgggcaaa tcagcacgct gctgatgtta cagattttgc      1200
     cacgtttgag gcacttgtat taaacaaata ctggagtcaa aagaaacaga cacgtctgca      1260
     aaacgaattc ttaaacggag attattaccg taaggactgg ggaaaactgc gggagttttg      1320
     cgagtgggaa ctgaaaaaat tagtgcacct ggacaagccg ttaagtgcgc taattgtgat      1380
     ctctacgtta ataagacgta tgccagactg gttacaatgg gatctgaaac acagtcctac      1440
     agactgcgtc gagagttttc tcgattacgt ggaacgtatg gactttgcaa tgcaccatcg      1500
     taatagaggg ggaaataatt ctggcggtaa ctttcagaat aacgagaaag gacagaaaca      1560
     atggcgtaac gcagggaata acggcgggca aaataatgct aatactaacg accagtggca      1620
     gggaaactaa agacgctccc aaccgtggtc cgtgaaggga gcgaacgaag aaaacgaaac      1680
     agggcctgga ataaggtaaa gaacatgaac cacgatttta gtggtaatga aagtaaggga      1740
     gatttaggag tgttcaatgt tgaggcaatt ttagggagtg aagaactatg gaatgggtgg      1800
     cgggagcatg atttattaaa ggaaaaacaa cgtaggagaa tactcgaaac ttcaggaaag      1860
     gactcaggta taataagtag taagaattct tgtgtggacg aaagcatagg tttggcagta      1920
     ctcgatctgg gcagtcagga aggtgtaaag gtcacggcaa aatttgattc cgacggcgtc      1980
     gatgttaggg aggctggcgt tcaggtaatg gaacctgacg cagctgatgt gcgtaatcac      2040
     gacgaggagt cgtgtgcacg gagagtttgt ttaccttgca gcaggaggct ggaggaaacg      2100
     ttacggcgga cgcgacggct ggcactctgg tgtcagacgt aaacagctgc agcgaatcag      2160
     tagatgttac tggtaactgt agcgagatca gggaattcat cattattgat gacgaacagc      2220
     aagttgccgt tgacgatata aatactgact ggctcagcaa agaggaaagt gagtttatgc      2280
     tagtgattac atctcgaaag cgaaatttat gattcaattg tttccacagg aatgggcaag      2340
     tgaaaagttc gacgttgcta gaaaactaca agtgttaagt gagagtcagc ctgagtttcg      2400
     caaggtattt aatgaaattt ttaaagatga tttagagctg gaatcaccaa gtgaaacagt      2460
     aattggtaca ttgtgcgtag atagctttaa agaaatagaa agagatttat tggcagagac      2520
     tgagcttagg aaggagccag tcgagaaagt gcaaccgtta attaaagtgg aaattaatgg      2580
     tacaaatgtg gattgtcttg ttgattctgg gagcaatgta tgttgcgttt ctctatcttt      2640
     tttgaacatg tggtaaatga tgatactatc gtatttccag ttagtagtgt taagataaaa      2700
     acagcaactg gaagtctagt aaacctataa aaaagaagta atttttgaat taggcattga      2760
     tggcgtaatg tatgcacaca gtttttttat tgttgataac ttgtgcacta acattctagt      2820
     gggttcagac ttcctgacga agtacgcagg aaatctgaat tacagtgaca agtatctaga      2880
     gttaaacaat ggggcataca gaaaacgcgt tgtatttaat ggtcacctag ctagagaagg      2940
     aatagttgcc agtgtaaaca tggataatga aataacggag ctagaattaa ttgatagtat      3000
     aaggaagaag gtagatgaga ctaaagggtt gactgaggaa aataaggtag aattgtttga      3060
     tttactgtgt gaataccagg atgtattctc ggacagacct gggaaaatta tagactttgt      3120
     atatcacatg caggtaaagg tacatgatcc gattaaggta cgcccatacc cagttcctat      3180
     ggccaaacgt gacgctgtaa aggcggaact gcaaaggcag ttggactggg gagtaatcga      3240
     gcctagccga agtgaatact gcaatccaat tgtcgtggtt aaaaagaggg acaatacagt      3300
     caggattgta ctagatgcta ggggaattaa caagatcatc gtgaaggaaa cagatcatcc      3360
     tggtaatatg gatgagctga ttcagaactt cagaaatgtg aggctaatga ctagtatgga      3420
     cctaacagct ggattttggc aggtgggact ggcggaggag tgccgtaaga caccgcgttt      3480
     ttgtttgagg gttgctcgta tcaatataag gtagtgccat ttggtctgtg cacttctgta      3540
     gcggtgtttg ttcgggccat gaatcatgtc ctggggcaag cactaatgag tcagatcaca      3600
     gtgtacgtag acgacatttt agtagcaaca tccacttggc aggaacattg cggtagacta      3660
     gaagacgttg agttctcaca gctttgcaaa gaaaaggaat gacgttaaaa ctcaagaaat      3720
     gcgagtttgt caaagctgaa cttgatttcc ttggtcatcg actgtcagcg gagggcattt      3780
     tccctaaagc cgacaatctg gcagcaatct cgaaatgtgc cattcctaga aaccgcaagc      3840
     aattaaaatc gttcaatgga atgtgctcgt actacagaaa atttgcgagt aatcagtgtt      3900
     tgaactcgcc aaatttgtct agattactga agaagaacgt gacttggtta tggaccaaag      3960
     agtgcgatga tgacttcaag gcaataaaag attgtttgtg caacagtaat attttgcact      4020
     atccagacat gacgttacca ttccgtttag tcactgacag ctcgaactac ggtgtgggag      4080
     cggcattgtt acagagggta gaagtcaatg gggtcacaga agacagaacg atttcgtttg      4140
     ccagccgctt gttatctaag catgagcgaa attacggaat cacagagaaa gaattactga      4200
     gtatcgtctg gggatttaag aaataccgta tttatctgga gggacgtgaa actgtcgtgt      4260
     taactgacca taaagcgctt agcttcctgc aggaatgcaa gctgcttaat gaaaggctga      4320
     cacgatgggc gatgtttctc caacaatttc agtattcggt ggagtacatc aaaggcaccg      4380
     acaatgtaat tgctgacgct ttgtcgaggc ttccagtaga aggaggagat gatggaatga      4440
     gagaggacgg gacagaggag tatcagtaat gtatatgaag ggcgacaaag gcgagaaaga      4500
     aattaaatgt atctgcaagg atgtgcggag aatcagaatg cggacccagc gctcaaacta      4560
     gtaaagtcac tgtttggaac aaaaggtaac gagaagctac agcgcttcta taaaattcac      4620
     aaaggggtgc tattccgaag aaagacgaga gcaaggaaga atggaaactt tgttttccag      4680
     aagagcaggt cgaaagctaa tacagtacat acatttaagt catggacact atgggccgca      4740
     gaaatgctta gaggtacttg aggactatgt gctctttata acatggcgag aaaagttagg      4800
     aagcagctca gcctgtatgt caaggaatat ggcactgtag caaatcaagg ggcgatgcag      4860
     agcatcattc cagataaagt gctggatctc ctagcaattg acatattcgg gcctctgccg      4920
     acgggtcgtg gcggggctaa atatgtgtta cttgcagttg acgtgttttc aaagtacgtc      4980
     aaactgtacg ccatgaagaa ggcaacaagc actgtaataa aaagtaaact ggaaaaagat      5040
     ttmtttgcga agctaggaaa acctaaagcc attttgtccg acaatgggtc acaatttgtg      5100
     tcgaaacttt gggagaattt catgagtact acaggtgtga aacacgtacg amtatcggta      5160
     ggacatcctg cggcaaaccc aacggaacgt tacatgagag aactcggcag actagctagg      5220
     acttattgca gccataagca cactaagtgg gccgaatata taccagcgtt cgaagacgta      5280
     atgaactctg taaaagttgt gccacaggtt tcacgccgat tgaagttatg ttgcgagaaa      5340
     aaccggcaaa tctgttggca gaattggtga ctacccacta ggtggacaaa tctcggcaca      5400
     agaagtagac gaaaaggtta aggaaaccat ggggaaagtg caaaagaaag acagaggaga      5460
     catgatggac ggtacaaagt agtacgttac aatcaakgtg acatggtatt aatacgaaag      5520
     aaagggaagt caagtgatct gaacaacgaa ataaaaaagc tgttcaaatt gtaccatggg      5580
     ccatttgtag ttactaaatg tgagcaccca aattcatatc atctggctta cccaacatct      5640
     gggaagagct taggtctcga aatgttactg agatgagata tatgttaaaa agtaagacga      5700
     caagtagtag gaaggtctct gtgactactt gtatgagtgc aagtaatgta atattttgsg      5760
     ggttgtattt gtgttttatt gtaaatttga taattgtggg gagtgtttta ttgtgataat      5820
     taatctgatm gattaattct tggtgcgcgg aggtggcgga aacttgtaag tagttcagag      5880
     aataattact ctggagaatt aattcttggt gcgcgaggta gcgcacgaat tgtcatatgt      5940
     tttgaagaat taattcttgg tgcgcggagg tggggctccg tataaaaagg gaattttatt      6000
     gttttgtggg taaatgatta atttttgtga tatgtattta tgtaaattca gggatttaaa      6060
     attgacatgt gtcagtcatt ttggaagggt taagtttcga tgagcgaaga taccgttctg      6120
     taacgtgtgc agtgtagtaa attggggtta ttaattattg ctagcaccag tgactgcagg      6180
     agaagtaaaa acggcaatcg cgtgtctcac tctcacgcag gactgtacag atcgtccttt      6240
     ccgataaata gctttcagct gttggtattt tatctgtcag gagggggtgt gaattctgta      6300
     ggctcttctg tgggcaaaac attttgttat gggcaaagtc gctcatgggc ataatttttc      6360
     acttaagtac ctggtctggc tgacgggctg cagggagcaa cgtagcagtg ctgcttcacc      6420
     ttagagtcgt aaatgcgtta actgctgact ctgtgatcca ctgttcgtgt gcttcgtcaa      6480
     gtggttataa aacgacagaa agtgctaagt gaaataataa acgaagtact gacccaggtt      6540
     cacacatttg tagtgacttt gttctttatt aatctatgac aattaggaca tttgagaact      6600
     ggaaaaataa gaatttacta acttggtaga gtaaaatttg ttttatttat atggggtaat      6660
     tgtctgtgta taaacataga acgcatagcc ctgcaactgc taataatttt attaattcta      6720
     tttttttatt ttatatatga ttgagaggat tctggtgcct tttcctttaa ttcatttgaa      6780
     agaaggtaaa gggaggtat                                                   6799
//
ID   Gypsy-63_LMi-LTR repbase;    DNA;    INV; 1609 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1609
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 1609 BP; 513 A; 273 C; 352 G; 471 T; 0 other;
     tgtgacgtta caacaacgtg caacacccat ttggagcgca aagcgcgctg gtttgacagc        60
     ggagaggtga aagttgcgat gaacgggcaa tcggccgctg cgaggaggta agcttcgctt       120
     ggcgggccgc gtgcaaatgg aaagcatggc ggacgtgacg tcatgtccaa ctgccatttt       180
     tcccgccgaa aaacgcattg tctttatttt agatactacg ctgacactat tagagttaca       240
     gatagcacga gagcaaatga aagaggagaa caacacgatt cagatgatgt gtgacatcat       300
     ttatattaat tttatatcaa aagttattca gaaaactaat atttattcac ttggaaaaat       360
     ccagaggcta aactaattga actacagtaa cgagcgaggg ctcaaatgaa aggtctcatc       420
     gagacgcaaa gtttggtata accatattat ctgcaacatt tatattgcgc ataataatgc       480
     acttttaagg aggaacaata gtgatttgtt aataacaatt aatacaagac agatacacaa       540
     acagcgaggc agtgataagt tgcaggtgtc gtaaacacac attatgacct gtttagaata       600
     tattattttt gtttatttta atatgttgtc tttgtgtaaa ctaaattatt tatttgttta       660
     tcgaccgtaa tttgtttaaa tttatgagca cagtaattct gaacagtgca ttggaaagag       720
     gactggaaaa tctacctgaa aaacacttta cctaagtgat tacttaaata ttcattgtgc       780
     gacggccgaa agacttattt gtcatgctga aaatattcat ttgtttaaac ttaagatttt       840
     gggggtatta ttagtgttag aaattaaagt attattgcat tagaatctta gcgcgcatct       900
     aacgatgccg tcatatcaac atttcaatca ttatttaaaa agttttgtac actactggga       960
     gagccactga acctcgttag gggaagtatt actggaaaga ccccacagat cgtatataag      1020
     tgggtgccgg gagcggccca ggatcagtcg acggcagttc agtcttgatg gcagacgtgt      1080
     gttgcgagtg cagtggaatc gagtgagacg ataggtgttg aacatagccg cagaatccgc      1140
     cgcgctggac tctgaaatat ttcggatgtg tgtggacttt gattttgaac agtagtcgga      1200
     actcagaaat tttcatcgct ttctgacttg ggtttttgga tagaacaatg aactttaata      1260
     gcaatcattt taggaacatt atccaaatga ttaaatattc atatagctat tttgttagca      1320
     atattggggg ctcgagctaa tcataccaga cggagtctaa cgaatttagt ggttctcgcc      1380
     agacataatc atgcaatggg caataaacaa ttttagtaaa aacgcaaacc tcatgttgta      1440
     gtcagttatt tagtagatgc cgccctagtt aaacattccc tgactttgaa attgaaagtt      1500
     tagttttaca aataaatgta tacgtgtatg gacagcaacg agccaaaagt agcaggaata      1560
     agtcatcccc taagacgaag ttagttggtt aagggtccgt accgttaca                  1609
//
ID   Gypsy-63_SpEx-I repbase;    DNA;    INV; 4251 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4251
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4129-4129 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4251 BP; 1242 A; 858 C; 898 G; 1253 T; 0 other;
     gcagcggtgg gattgctccc atctgtttcc ggcgagcctc ccgcagcatc gctcctatct        60
     gtttccggcg agcctcccgc agcatcgctc ccatttgttt ccggcgagcc tcccgcagca       120
     tcggccgcgc agaccgaggg atatttcacg gcggagtttg cggcgcaccg gggcgttcct       180
     cccgccgctg agaagatgcc gcctccgccg gcaccgcctc agcaggatgt atgggtgact       240
     ttcctcaaaa atatgatggc ggcgtcctca tcaagtggtg ctcagtttac gcagcgcaaa       300
     ctacaagtaa gtgatattta tttgccgcca tttgaccctg atgaaagtca attttctatt       360
     gttcagtggt gtgtggaaat tgaacagcat cgtaataata attcttggtc ggactatgag       420
     actagaaacg ccgcgttcac gcatttacaa ggacgtgcga agaagtgggc aacccattct       480
     tatcctctat gtaaaacatg ggaggatctt aaggagcgac ttacacggca gtttgcggct       540
     acaaaacggt tccatgattt gttccgtgac atggtaaact atactagtga tcaagcgatt       600
     acatacgtag aatattctac caataaatta gctatgattg ataggcttga gagcggttgg       660
     agtgaacaaa ataagattga agttgtcatc tcgggcataa ccgactacca ggtacgatca       720
     cagttactta aaaatactcc tattgatttt attacatttg accgtcactt gagtacgtat       780
     cccaaaatta aaaatataaa gaggttctct gataataacc tccgcgttca atgtgatgtg       840
     tcacagccaa aacaaataaa ttcttatgac aagccagctg aaagacgttg tcatcattgt       900
     gataaacccg gtcatttaat gcgtcattgt gcgttgttgc gtaatcagaa aaaacgcgag       960
     cccaataaac cacttcaatc ttctaatgag aactctgttg caaaacctgt tactacttgc      1020
     tcatactgta acaaacccgg acataacgat caagtgtgtt ttactaaaca gcgtgatgaa      1080
     agattatcta acgcgacaaa gccgcccgta aaatagatca atattttgtt caaatccaga      1140
     tgattcatta attgaaatca aaattaatga ttataaatta caagcgttgt tagataccgg      1200
     tgccgaatgc tctttaatta agactgctat tgctgattgt ataccggaca aaagagaatt      1260
     cgagttcgcc cgcctcacgg gtattggctt tgcttcgtgt tactcctttc aaaaagtaac      1320
     tacaaatgta gaagtgtatg atgggatcca tgctgaagtt acctttcata tcacagattc      1380
     cttgccttac gatgttatcc taggtaggga aaattttaag agtactggtt tagaattgaa      1440
     actcaacagt ctgggattaa acatcacgcg cgaagttttt gttattacgg atactactaa      1500
     aacgatacct gattttgaca ttaataatat tgacactgat ttgactctaa ctgaacacaa      1560
     aaataaactt gcacaaattt tacatgaatt taagactagt tttgttccag acaaaattgt      1620
     ccagcgtcat ccctatcgct tagcacccgc tgaacgcacc tcgcttcggg gtataatagt      1680
     cgatttaaag tctaagggta ttattcgcga aagttcatct ccattttcga gccctgtcct      1740
     gctcgtcaag aaaaaggacg ggtccgatcg gctatgtgtc gattataggg agttaaactc      1800
     aaacacagtc cgtgatagtt accccttacc tctcatatct gaacaaatag atgctaggat      1860
     agtctaatta ttttacgtgt cttgatatgg cctctggatt tcaccagatc ccgatggcac      1920
     ctcagtctgt tgaaaatacc gcattcataa cgccagacgg ggtctgggaa tacctgaaaa      1980
     tgccgttagt cagcgaataa ccgatgtaga aagcaggtat cacagctttg agcttgaaac      2040
     gcttgctgtg ttcaaagcaa tcaaacatgt tggtcaaacg attgaatcaa tcgaaaacga      2100
     tacgattgat gctactttgc gatcaacatt cacgataaaa gataatttgc tgtacaaaat      2160
     tttcagttga acggaaagac ttacagtcgc gtcatagtgc caaagaactt tcgatggcaa      2220
     atcatccagc gttttcatga tgcgttaaag catttagggt gggaaaagac gttgacaaaa      2280
     atagggagca tttctggttc ccaaatatga cttcatgcgt gcgaacctat gtagaccgtt      2340
     gcctggcctg caaaataaat aaagctcctt cgggcagaaa acaatccgcc ttacacccta      2400
     tagacaaggt tgcagagcca ttccacacgg tccatataga cacgagcggt aaactgactg      2460
     gcgctaagct tgctaaagag tatgtcatcg tcatcgtcga tgccttcacc aaatattgtc      2520
     atttaacatc cgtcaaagat ctgagtgcta agtctgcttg tgaagcattg cgaacttttg      2580
     taatgctttt tgggacacct aagcgttgtg tagcagacca gggcacttcg ttcactggga      2640
     aagaatttcg agacctctgt gctgaatggg gaatagaatt tcattcaatt tcgcgctaac      2700
     ggccaagtag agcgatttat gcccgtgcta acaaattgtc tcaccattgc agagaactat      2760
     gaaaagaggt cttggcagtc tgtccttgga gaaatgcagc ttgctctaaa ctgtacagtg      2820
     tctaaaagca caggcaaaag cccgttgcag ttgctgctcg gttgcaataa gtgcccgccg      2880
     cgtcttaatg gacttatttc tgaatttgac aaacttgaca ttgacgaggt aagacatgag      2940
     gctaaagtca gaatggacga acaaggttta ctcgacaaat cacgattcga tgcaaataaa      3000
     gctgcaattc gaccattcac agtaggggac cttgtattgt ggcaaaagaa cccaagggtg      3060
     attaaaaaac ttggtgaaaa atttactgga ccatgcaaaa tagttgaggt ttgtcctaac      3120
     gatcggtaca agattgtacc cttagctggt ggacgcgagc agtacgtgag tcacgagcga      3180
     ctgcgtgcat atccgtctag tttgccagag ttatcagact gcttagatga cgctgaggta      3240
     actaacgaat gttgatggga tcaatttaac ggatagggct agataactta tatgttattt      3300
     tcgcatattc ccatcatttt ctttttctct tttttttgat ttcttgccaa tcttggtgtg      3360
     ttaacatttt tgtttatttt gaacgaagaa gttagattct ttaagttttg tttttattgt      3420
     tgatcggaat tgtaacaata tctttgtttt gttttagcac atagttttga atactgtacc      3480
     aattatgtgt tgctgtatcg ataagctaat aaaccatctg tgaaagctta tacgctttgt      3540
     tttgctgagt aacagttgaa agctataacg ctttactgaa ataattattc atgaaagctg      3600
     ctacgctttg ctttgttcag tgacagacag ttaaaagcta taacgcttta ctgaaataat      3660
     tattcatgaa agctgctacg ctttgctttg ttcagtgaca gacagttaaa agctataacg      3720
     ctttactgaa ataattattc atgaaagctg ctacgctttg ctttgttcag tgacagacag      3780
     ttaaaagcta taacgcttta ctgaaataat tattcatgaa agctgctacg ctttgctttg      3840
     ttcagtgaca gacagttgaa agctataacg ctttactgaa ataattattc atgaaagctg      3900
     ctacgctttg ctttgttcag tgacagacag ttgaaagcta ataacgcttt actgaaataa      3960
     ttattcatga aagctactac gctttgtttt gttaagctga catttgataa ctatgaaacg      4020
     catacgttga aggcgatatt accgttttgc aaggtaacta aagtaacttt gtagtatagt      4080
     aatggtggct gaaagcatta ttacgctttg ctatgtatgt tgcaagtttg ctacaagttc      4140
     ctgtaattct ctgccgtatt tattgctaca tgaaatgctc caagggtgcc tatgctatgc      4200
     agtgaattgc catagaccaa cgcgagagcg cgttgagttg caggatggcc g               4251
//
ID   Gypsy-63_SpEx-LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-430
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4192-4192 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs. It is often inserted in
CC   (TA)n microsatellites.
XX
SQ   Sequence 430 BP; 110 A; 78 C; 105 G; 137 T; 0 other;
     tgtcggagaa tcatttaaac ttgtaagtaa atattattgt tatctatcaa atgtaacatt        60
     gacagttgag tgtcatgtcg cctcaagatt gaaggtgatt ggcacgttcg tctgacgaga       120
     ttgattcaat ggggggacac acgggacttg gagtctgtgt ggtcttagtc tatagtccta       180
     gtctgtggtc ttagactgtg gaattagtct atggttttag tctatggcct tagtctgtgg       240
     tctagaaaga aactatgaaa atggttgtct atgactctat ggttttatct attgaaatgt       300
     cagtggtgcg tcgatcactt ctacgtgaat cttcgcctgc gccggttgtg cgtgctgact       360
     tttcctagct aacaatatgg ccgacaacga gacgactgat ggcgaaccaa atccaaaatc       420
     atccacgaca                                                              430
//
ID   Gypsy-63_TrVa-I repbase;    DNA;    INV; 6494 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6494
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 308-308 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           692..1888
FT                 /product="Gypsy-63_TrVa-I_1p"
FT                 /note="SAP and zinc finger."
FT                 /translation="MPNAEFGDIYKLRKEELIAALQARSLSTQGDRNILRR
FT                 RLYNFEHPPLAKNRHFSVITKTKKKVGQTSKKMAEQETQSKVPFFKPIAFL
FT                 GSEDEDIVQFFNNFELASEINGWSDDLKKKYLPVYLQKTANAFYYTLKIEA
FT                 YDWKSLKTQFLEAFQPSTQKHILRTRLENRTQGIGEATISYLTDVLTLCHQ
FT                 VNAKMTEDEICNYVLKGLLPDTVKAISMSDNSTLSNLKNNLKKYDQMAYNL
FT                 SIQQSSLARTEILKNVCAISSTQPKLKSEQSTDQRVDELSKKLDILIDLFS
FT                 KNHMATTSINLQPQTSYPAHQQVYQNPIKSQPLFVHQPHIRPQNNANYQQP
FT                 STFGHSTTQNLANYQQPSTSGLAANPSTIVCHYCKKTGHMKKDCFKLQQKN
FT                 SQPRG"
FT   CDS           1858..5121
FT                 /product="Gypsy-63_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="VTTKKLATEGLEFSKKLTPQPRIEIINPILNFAAEGK
FT                 ALSIPILVENQEISALFDTGSHINCISLKTFRKLTTPQVLRKSELQLRTAN
FT                 GSQLIVHGAATVTISIDALEFQVPFIVTENLACPLILGTSFLADNQIIIDY
FT                 ERCAIVLKDQRTVKFLVNSIANVLPIIDDPVTLNGQSIPPPSSQSSSPSDH
FT                 VSSPTSSLDFSAALSPELTNEQRTKALALLNEFSDIFAKHDLDIQFIDLPP
FT                 CKISLKDKIPVYVKPYRSSPKMRNDVNTHVQGLIKAGIVEPCKSAYGAPVF
FT                 TVPKKQNKSRFVVDYRELNKKVVNDKFPLPRIDNILQSLENKQFFSTMDMN
FT                 NGFFQVKVDSNDRHILAFNTQFGTFTFCSLPQGFKNSPPEFQRTQNTIFAD
FT                 LLYKSVVIYIDDVCCFSSSFDQHLAHMREIFSRFRQFRVKLKLEKCKFFAI
FT                 EIDLLGHHITRTGFQPLEKNISVIKNHPVPSTITGIRSFIGLCSYFRKYIK
FT                 NFAKHALPLTSLLKGSPEKKQAVILNEEALASFEFLKKCLISAPVLAHFSD
FT                 DRETFLTTDCSCKAMGFMLEQKDESGNFHPIGFGSKNLNDAQSKYSAIEME
FT                 LLAIVTGIENFREYLYFRPFIVFSDHKALESFRTLKSPSCRIAKFTAKILD
FT                 YDFTIVYKPGKANLVADHLSREVNXIQSVDDSFVIEQSKDEFCSNLIKALN
FT                 NKKNVSDKFKKLSRRFTLNDDKILCLKQLKNNLVEKLVVVPKSQSQSVIQS
FT                 YHDSLTSGHFGIKKTILKIQSKYYWDTLSKDVTDYIKKCKLCQFNKRQNCN
FT                 QGLAKPIEITTGLPFNRITIDFTGPFSPSERKQFILVGTCASTKFVVTKAY
FT                 TKANAESAANFLLEIITRFGTPKFLHSDRGSHFDNCIIQNICKKFNIVHLL
FT                 STSYHPESQAYTERTNQTIKQCLTNYMSENHSNWSYLLPFVTFSINTTPHS
FT                 RLKYAPFYLLHGYMPNLPIDNKILPEISSLNIVKSMEALQKVRNDIPRLIT
FT                 SIQEKDKYYYDKKHKSVEFLPNQLVLLKNPPSVFKKTFQPKFTGPFKIIRK
FT                 ISEVNYEVEILNNNVATLETFHVRRLKPFLY"
XX
SQ   Sequence 6494 BP; 2066 A; 1161 C; 1033 G; 2233 T; 1 other;
     gtggcgccca acgtggttgt gtgacttctc atgttttatt ttggcaatcc tagcgaataa        60
     tgtattttgt attttttgta gctcgtattt tttaaatatg acctacttga atttggaaat       120
     ttggaaattt ggaattttga actttgatta ggatatatta cgtttaacgt gattccgttg       180
     gtacacttta aaagaattga tttgcgtaga caaactaatg gttcgtgtgt atcatgtgta       240
     gttaaatgtc gtgttttggt atttttgcac taatatatcg ctaatttgtt ggggtatttg       300
     cctctatagt gagccagttc taggaaattt agattggtag cctatatgag tacaggtttt       360
     acttagtagc aaaatttttt tttgtactat tgtagccgag tatacgccta gcgcaataca       420
     tttaggattg taatttaaaa cgacataagg ttaatcaatt aaataatttt ttttcttaaa       480
     ttgagtgagt gaattcgata ctatcgataa ttttttttga aatatttttg acagtttaga       540
     attttttgaa tcttttgatt ctttggaaac attagttaga atttgttcag attttgtaat       600
     gtcacttcat aattgattag gcagaaaaat ttagggaaaa atttagtttt tcaatagttg       660
     atgccatgtt ttaattatta tcaggattcg aatgccgaat gcagagtttg gggatatcta       720
     taagttaagg aaagaagaac tcatagctgc ccttcaagca agaagtcttt caactcaagg       780
     agatcgaaat attcttcgtc gaaggctcta taattttgag catccacctc tagcgaaaaa       840
     tcgacatttt agtgttatca ctaaaactaa gaagaaagtt ggtcaaactt cgaaaaagat       900
     ggctgaacag gagactcaat ctaaagttcc attctttaaa cctattgcat ttttagggtc       960
     ggaagacgag gatattgttc aattttttaa taattttgaa cttgcaagtg aaattaatgg      1020
     ctggtctgat gatttaaaga agaaatattt gccagtttat ctccagaaaa cggcaaatgc      1080
     gttctattat actttgaaaa tagaggctta tgattggaaa tctttgaaaa cccagtttct      1140
     tgaagctttc caaccatcga ctcaaaagca catcttgagg acacgtttgg aaaatagaac      1200
     acaaggtatc ggcgaggcga ctatctctta tttaacagac gttctcactt tgtgtcatca      1260
     ggtgaatgcg aaaatgactg aagatgaaat ttgtaattat gtcttgaaag gtctccttcc      1320
     agataccgta aaggcaattt ctatgtcaga taattcaacg ttgtctaatt tgaaaaataa      1380
     tctaaaaaaa tacgatcaaa tggcgtataa tttgagcatt caacaaagct cactggcccg      1440
     tactgagatt ttgaaaaacg tttgcgcaat ttcttctact caaccaaagc tgaaatctga      1500
     acaaagtaca gatcaacgag tggatgaact ctcaaaaaaa ttggatattt tgattgattt      1560
     attttcaaaa aatcacatgg ccactacgtc cattaattta cagccgcaga cgtcatatcc      1620
     agcacatcag caggtttatc aaaatcccat aaaaagccag cctctttttg tacatcaacc      1680
     tcatatcagg cctcaaaata atgcaaatta tcaacaaccg tcaacttttg gtcattcaac      1740
     tactcaaaat cttgcaaatt atcaacaacc gtcgacttct ggtctggcag ctaatccaag      1800
     cacaatagtt tgtcattatt gtaagaaaac tggtcatatg aagaaagatt gttttaagtt      1860
     acaacaaaaa aactcgcaac cgaggggtta gaattttcaa aaaaattaac tcctcagcct      1920
     cggatagaaa tcatcaaccc aattttgaat tttgcagcag aaggaaaagc gttatccata      1980
     cctattctgg ttgaaaatca agaaatttca gctctttttg acaccggctc gcatattaat      2040
     tgcatttctt tgaaaacatt cagaaaactg acaacaccgc aggtacttcg aaaatctgag      2100
     ttacaacttc ggactgcgaa tggctctcag ctgattgtgc atggcgcagc cacggtcact      2160
     atctcgattg atgcgcttga atttcaagtt cctttcatcg ttactgaaaa tctcgcttgt      2220
     cccttgattc tcggcacttc tttcttagct gataaccaga ttataattga ctacgagcgg      2280
     tgcgcgattg tcttaaaaga tcaacgcacg gtgaaattcc ttgtcaactc catcgccaat      2340
     gttctaccta ttatcgatga cccagtaact ttgaacggtc aatcaattcc gcccccctcc      2400
     tctcaatctt cttctccttc tgatcacgtt tcctctccta cctcttctct cgatttttcg      2460
     gcagctcttt ccccagaatt aactaatgaa caacgtacca aggcattggc acttcttaat      2520
     gaattttctg atattttcgc aaaacatgat cttgatattc agtttattga tttgcccccc      2580
     tgtaaaattt ctttaaaaga taaaattcct gtttatgtaa aaccgtatag atcatcgccg      2640
     aaaatgcgca atgatgtaaa tacgcatgtt caaggcttga ttaaagctgg cattgtagag      2700
     ccgtgtaaga gtgcttatgg tgctccggtc tttacagtgc caaagaaaca aaacaaatca      2760
     cgatttgtgg tggattatcg tgagttaaac aaaaaagtcg ttaatgataa attcccatta      2820
     cctaggatag ataatatttt gcaatcttta gaaaataagc aatttttcag tactatggat      2880
     atgaataatg gtttttttca agtaaaagtt gatagtaatg ataggcatat ccttgcattt      2940
     aacactcaat ttggtacctt tactttttgc tctttacctc aaggttttaa aaattcccct      3000
     ccggaattcc agcgaacgca aaatactatt tttgctgatt tattgtacaa atctgttgta      3060
     atttatattg atgacgtttg ttgtttttcg tcatctttcg atcaacattt ggcacatatg      3120
     agagaaattt tttcacgatt caggcaattt agagttaaat taaagttaga aaaatgcaaa      3180
     ttctttgcaa tcgaaatcga tttattagga catcatataa ctagaaccgg ttttcaacct      3240
     ttagagaaaa atatttctgt tattaaaaat caccctgtac cgtctactat tacaggaatt      3300
     agaagtttta taggcctatg ctcctatttt cgaaaatata taaaaaattt tgcaaaacat      3360
     gctctaccac tcacttctct gctaaaaggt agtccggaaa agaaacaagc tgttatttta      3420
     aatgaagaag cattagcttc gtttgaattt ttgaaaaaat gcctcatctc tgctcctgtg      3480
     ttagctcatt tttccgatga cagagagaca tttttgacta ctgattgttc atgcaaagca      3540
     atgggtttta tgctggagca aaaggacgaa tcaggcaact tccatcctat aggttttggc      3600
     agtaaaaact taaatgatgc ccagtcgaag tattcagcga ttgaaatgga gcttctagca      3660
     attgttactg gcattgaaaa tttcagggaa tatctttatt ttcgaccatt tattgtattc      3720
     agtgatcata aggctttgga atcttttaga actttaaaaa gtccatcatg tagaatcgct      3780
     aaatttacag ccaaaatttt agactacgac tttactattg tttacaaacc aggaaaagct      3840
     aatcttgttg ccgaccatct ttctcgagaa gtaaattkta ttcaatctgt cgatgattca      3900
     tttgtaatag aacaatctaa agatgaattc tgtagtaatt taataaaagc ccttaataat      3960
     aaaaaaaatg tatctgataa atttaaaaag ctgtctagac gctttactct caatgatgat      4020
     aaaattctct gccttaagca attaaaaaat aatttagtcg agaaacttgt tgtagttcca      4080
     aaatctcaaa gtcagtcagt aattcaatct tatcacgatt ctttaactag cggccatttt      4140
     ggcattaaaa agacaatttt gaaaattcaa agtaaatact attgggacac tttgtccaaa      4200
     gatgtgactg attatataaa aaaatgtaaa ttgtgccaat ttaataaacg tcaaaattgt      4260
     aaccaaggat tagctaaacc cattgaaata accacaggtt tacccttcaa taggattaca      4320
     atagatttta caggtccctt ttcacctagt gaacgtaagc aatttattct tgtaggtact      4380
     tgtgcttcaa caaaatttgt agtaacgaaa gcatacacta aggcaaatgc agagtctgca      4440
     gcaaattttc tgttagaaat aattacgagg tttggcacac ctaaatttct tcactctgat      4500
     cgaggttctc attttgataa ttgtattatt caaaatattt gtaaaaaatt caatattgtt      4560
     catttattaa gtacttctta tcatcctgag tcacaagcat ataccgaaag aactaatcaa      4620
     acaattaaac aatgtctcac gaattatatg tcagagaacc attctaattg gagttatctt      4680
     ttgccttttg taacttttag tattaataca acacctcatt cacgtctaaa gtatgcacca      4740
     ttttatttgc ttcatggata tatgcctaac cttcctattg ataataaaat tcttccagaa      4800
     attagttcgt taaacattgt aaaatcgatg gaagcattac aaaaggtcag aaatgatatt      4860
     cctagattaa ttacgtcaat tcaggaaaaa gacaaatatt actatgataa gaaacataaa      4920
     tcggttgaat ttttgcctaa ccagttagtt ctactcaaaa atcccccttc tgtattcaaa      4980
     aagacgtttc agccgaaatt tactggtcct tttaaaatta ttcggaaaat ttcggaagta      5040
     aattatgagg tagaaatttt gaataataat gtggcaacat tggaaacatt ccatgttcgt      5100
     cgactaaaac catttttata ttaaatagtg gaatttgtca ttccctattt tcgttctttt      5160
     tgttatcact cactcttttg gtatttcgta ttttggttgt caggtatttt tttttggtgg      5220
     ctcaaatgct ctcgagtcca tttttgtttt gatctgttac tcattcctgc caaaggtata      5280
     aattgagatg ccctgaaggg tcgaattcat tcttatttgc tgcctggtcg actctcgttg      5340
     tgtttttttt tctgttcgtt ttcgtcgttt ttctcgcata ttcgttatca tgtcttctag      5400
     caaggtaaaa tcttcatcta aatccatcac ctcaaccaaa ccccttgtac cttcttcgaa      5460
     gccctcctct agctcctcat ccaaaaccct ttcaaaatct tcagtcccca aacctaccct      5520
     aagtaccaaa atggaaaccc ttttcggaaa atctccctcc cctgaaaatc ctgttaaaaa      5580
     agttattgct tcatataaaa tcccgaaatt acaaaaaaat ccagtatcat ccgaaactat      5640
     ccttccgaaa atctctgaac ctaaaccctc tgaacctaaa ccctctgacc ctatcaaaac      5700
     tggcaaatcc gatcctattg aacctcctcg ccctcgctcc aattcaactt catcttcctc      5760
     ttcatcgtct tcttcttcgt cgtcttcttc ctcgtcttca tcatcctcct cttctagctc      5820
     atcttcggct tctaccgtta ttaaggcacc tgctgctaag aagcctaagg ttgataactt      5880
     aaaaaaaaga caacgcggga aaaggtcagg caggaaacat aaggttgctt tgaaaaaaga      5940
     tgcgtcaaca cagacggatg cctctgatga tacttgtgta ttttgcaata agcagtagct      6000
     taattctgtt tcgatgtctg tcaatatttt gtttccattg tttttcgatg tttttgttca      6060
     tttctttgaa tttttttttt cgaaattttg acctttggta ggaaatgatg tttcgttgac      6120
     attttatttg tattcttgtt tttatttttg atcttgaagt gttcatttat ttgcaataat      6180
     ttgtttgtat tcaaatttca tttgtttgaa aaaaaaaaaa aaaaaaaaaa aaaattgata      6240
     tttttgataa ttgcattttt cgattttgac attttttgat atttgcaatg aaacttgctt      6300
     gctatcgata attgcttttg tatatatgta catctgttgt aaaaaaaaaa aaaaaaaaaa      6360
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa atgtaatttt ttttgctaat gtctgtaata      6420
     tttgtgccag tttgtttttt tttctcattt cgcaataatt tcgaggacga aatttttttt      6480
     ttgggggagg cacc                                                        6494
//
ID   Gypsy-63_TrVa-LTR repbase;    DNA;    INV; 1200 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-63_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-1200
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 367-367 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1200 BP; 231 A; 245 C; 253 G; 471 T; 0 other;
     tgtcgtgccg ccacctgtat ttttatgtat aattaagtag acagccttgg caacgctgca        60
     ctaccactta cacattcatt ttaatttcat ttgttatcat tttagtttgt tactttcctc       120
     gatcatctga ttttctccct tttcgtttgt ttgtctggtt ccgttttatt ttcagttacg       180
     taatgagctc tctctctcac tctttgtttc tctttctttc tctctctcat tacttttatt       240
     ttgttattta aactcgtctg cccagagttc gggggttcag tcttctacta gccccgactc       300
     gagagcattg gagtcttttg atattatttt atgcgtttga gctattgatt attgatcgat       360
     tctttttgat gattgattat ttttaactat aaattgatgc ttaattattg taagtatttg       420
     agtctgtgat accttcgtat aagtttgttt ttcgttgaat atacatttgt acagttgtac       480
     tttcgtcttt tttatcattc gatatatttc gatatatttg cctatctgac ttcctaatac       540
     ttagtttttt caatctttta tttattttat tttctttaac gcgttttctt gctagtgtcg       600
     cgtcgtgctg aactttgtgt atgtaattca ctgttgctga cgtgatgtcg ctattgctga       660
     ctttttagtc gctgagctga cagattgtcg cgacgtgttg gattttatta cacatcgatc       720
     gctgatgctg acaattgttt cgctgttgct gactgtcgct gttgctgaca attttagata       780
     attttctcaa ctttctctga tcattagctg cctgctgatt ggtcgctgtg ctgactaatt       840
     tcgtgctgac gctgactttg tcgcgtcgct gaaataaagt cgcgcttgca gacggatcgc       900
     ggcgtgcggg tgagcagtgt gacccatttg tcgcggttgc cgctttggtc gctgtgctga       960
     ctaatttcga gctgacgctg actttgtcgc gtcgctgaaa tacagtcgcg cgtgcagact      1020
     gagcgcgacg cgcggacgct tgatggttga agtaaagctt attgaaggat tgtcgctacg      1080
     cgctgacgtg tcgcgacgcg cgaacgctag ttagttatcg ctagattaac cttaggagta      1140
     acgtcgaacc aaaactttaa ttctgcgtgt gcgctttcta gccggagcgc tgacacgaca      1200
//
ID   Gypsy-640_AA-I repbase;    DNA;    INV; 4343 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-640_;
KW   Gypsy-640_AA-I; Gypsy-640_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4343
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4343
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2165-2165 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..4331
FT                 /product="Gypsy-640_AA-I_1p"
FT                 /translation="MATNSINANGGEMQQAILQMAELLQRLATPTPINQEK
FT                 ILESLSTNISEFVFDPENGITFEKWFARYSDLFDNDARNLDDAAKVRLLLR
FT                 KLDHASHSRYVNYILPQLPRDIQFDETVATLKKIFGTPTSVFNKRFHCLQL
FT                 VKNEAEDIISYGGKVNRACEEFEFDKVKIDHFKCLVFVCGLKASRYADIRA
FT                 RLLSRMEGETAEAPVTLQTLIDEFQRLVNLKADTTLIEKPSGSKHIVHAVS
FT                 EKKENQPQRPPKAKGKQLPSTPCWQCGQVHYVRDCPFSDHRCKTCDRVGHK
FT                 EGYCGCIKKSTAGDSSQTHSTGKKPTKKKQNKSSGSSSQTRGVSVVNHIAN
FT                 RSKKRRFVTTAINNVTTSLQLDSASDITVICEQTWQQLGKPETTPPSIEAV
FT                 NASGEPLGLIGEFQCDVTLNGTTKRGKCFVTSSPNLNVFGIDWIDMFDLWS
FT                 LPFDSICNSIASTSKPAFDDEVQKLQSEHPNVFDDSLGHCTKTKVKLFLKS
FT                 NARPVFCPKRPVPFNTIPLVDTELNRLESLGIISPVDFSEWAAPIVAVRKP
FT                 NGRVRICADYSTGLNDALEANHYPLPTPEEIFAQLAGSRVFSIIDLSDAYL
FT                 QVEVDDESKKLLTINTHKGLFQFNRLAPGVKSAPGAFQRLIDGMIADIPGI
FT                 RSFIDDVIVFGPTWEAHAESLSKLLIRLEQYGFHVKAEKCKFFQTELGYLG
FT                 HIVDRHGIRPDPEKLRAIANIPAPTNVTELRSFLGAVNFYGRFVRNIHELR
FT                 HPMDQLLKKDVKWQWNVECQQAFEKFKAILQSELLLTHYDPTLPIIVAADA
FT                 SNTGIGAVILHKFPDGKIKAVQHASRSLSPAEQGYGQPEKEALALVYAVTK
FT                 FHKFLLGRHFTLQTDHKPLLAIFGSKKGIPLHTANRLQRWALIMLNYDFDI
FT                 QHISTNDFGCADMLSRLIDRTTRPEEEYVVAAINLEDDLVSIVNDSLDKLP
FT                 VSFTELQDATKKNSVLQSVARFIDKGWPRDSKSVTTPDVLPYFNRRDSLSI
FT                 VDGCVMLHDRVVVPHQFQRKILKQFHRGHPGVVRMKAIARSFVYWPGMDDQ
FT                 IEDFVRNCNPCCVAGKAPIKTTLESWPAPSKPWSRIHIDYAGPVDGTYLLI
FT                 VVDPFSKWPEVFATRTTTASTTVRLLSESFATFGIPETIVSDNGPQFVSHE
FT                 FQTFCQGHGIQHLRTAPYHPQSNGLAERFVDTVKRSLRKIRSGGETLDSAL
FT                 QTFLQVYRTTPTSDLDGKSPAEVMFGRPIRTISSLLLPQPECRNPSSKKTE
FT                 KQNASFNRKHGAIAKSFQPGDCVYAQVHQGNAWHWEAATVIECVGKVNYNV
FT                 YLVDKQRLIRAHTNQLKKRSGDPVRIDGPSPLSIFVDEFGLSDTAPIRRPV
FT                 QQPGSPAVSAPESGDSEYFSESDPEDEPAPQPTVNNNNNRPRRIVRLPARF
FT                 EPYYLN"
XX
SQ   Sequence 4343 BP; 1142 A; 1216 C; 1073 G; 912 T; 0 other;
     tttttggcga cgaggtaaaa agtgtaaaag actgccctac gcaacgagct ccagcagacg        60
     cggaaacgga aatggcgaca aattcgatca acgcaaacgg tggggaaatg cagcaagcga       120
     tcctgcaaat ggctgaacta ctccaacgat tggccacgcc gacgccgatc aaccaggaga       180
     aaattctaga gtcgctctcc accaacatca gcgaatttgt gttcgacccc gaaaacggca       240
     tcacatttga aaagtggttt gcacgttatt cggacctttt cgacaacgac gctcggaatc       300
     tcgacgacgc ggccaaggta cgtcttctcc tgcggaagtt ggatcatgct tcacacagcc       360
     gctatgtgaa ctacatcctg ccccagcttc ccagagacat ccagttcgac gaaacggtag       420
     ccacgctgaa aaaaattttc ggcacaccaa cgtccgtttt caacaaacgc ttccattgcc       480
     tacagctggt gaaaaatgag gcagaagaca tcatcagcta cggcgggaag gtaaatcggg       540
     catgcgagga gttcgagttc gataaagtta aaatcgacca cttcaagtgc ttggttttcg       600
     tctgtggtct caaagcatcc cgctacgcag acattcgggc acggcttctt tcccgcatgg       660
     agggcgagac ggctgaagca ccagttactc tccagacact aatcgacgag ttccagcgac       720
     ttgtcaacct caaggcggac acaacgctca tcgaaaaacc atcaggttcg aagcacatcg       780
     tccacgcggt ctcggagaaa aaggagaatc agccacaacg tccaccgaaa gcgaaaggta       840
     agcagctacc atccacacca tgctggcaat gtggtcaggt ccactacgtg cgggactgcc       900
     cattttccga ccatcgttgc aaaacctgcg atcgcgtcgg ccacaaggaa ggttactgcg       960
     gctgcatcaa gaagtcaacc gccggcgatt ccagtcaaac gcattcgacc ggtaagaagc      1020
     ctacaaagaa gaagcagaat aagtcaagtg gttccagttc ccaaactcga ggagtctccg      1080
     tggtgaacca catcgcaaac cgttccaaga agcgacgctt cgtaacgaca gccatcaaca      1140
     acgtcacaac gtcgttgcaa ttggactcag ccagcgacat cacggtgatt tgcgaacaaa      1200
     cctggcagca gctaggtaaa ccggaaacga cgccaccatc gattgaagca gtcaacgcgt      1260
     ccggtgaacc actggggctt ataggcgagt tccaatgcga cgtcacgctc aacggaacaa      1320
     cgaaacgtgg caaatgcttt gtcacgtcgt cccccaatct caacgtcttc ggcatcgatt      1380
     ggatcgatat gttcgatttg tggtcgctgc cattcgactc gatctgcaac agcatcgctt      1440
     cgacttccaa gccagcgttc gatgacgagg tccagaaact tcaaagcgaa catccgaacg      1500
     ttttcgacga ctcgctgggc cactgcacca agacaaaggt aaaacttttc cttaaatcta      1560
     acgcacgtcc tgttttttgt ccaaagcgtc cggtgccatt caacacgatt ccgttagtgg      1620
     acaccgagct caatcgactc gaatcgttgg gaatcatctc tccagtcgat ttttcggagt      1680
     gggccgctcc gattgtcgct gtccgcaagc caaacggacg ggttcgcatc tgtgcggact      1740
     attcgactgg tctcaacgat gcgttagaag cgaatcacta ccctctgccg acgccggagg      1800
     aaattttcgc ccaactggcc ggtagtcgcg tcttcagcat catcgacctg tctgacgcat      1860
     acctgcaggt tgaagtggac gacgagtcga agaagctact aaccatcaac acgcacaagg      1920
     ggctgttcca attcaaccgc ctcgctccag gggtgaaatc cgcgccagga gcattccaac      1980
     ggctgatcga cggcatgatt gccgacatcc caggcattcg ctccttcatc gatgacgtca      2040
     tagtcttcgg tcccacctgg gaggcacacg cagagtcact cagcaaactg ctgattcggc      2100
     tggagcagta cgggttccac gtcaaggcgg aaaagtgcaa gtttttccaa accgagcttg      2160
     gttacctggg ccatatcgtg gatcgccatg gtattcgtcc ggatccagaa aagcttcgag      2220
     ccatcgccaa catcccagct ccaaccaacg tgaccgaact tcgctcgttt ctcggtgccg      2280
     ttaatttcta cggcagattt gtgcgcaaca tccacgagct tcgccaccca atggaccagc      2340
     tactgaagaa ggatgtcaag tggcagtgga acgtcgaatg ccagcaagcg ttcgaaaaat      2400
     tcaaggcgat tctgcagtcg gaactattgt tgacgcacta cgatccgaca ctacctatca      2460
     tcgttgcagc agatgcctcc aacaccggca ttggtgcggt gatactgcat aaattcccgg      2520
     atggcaaaat caaggcagtt cagcatgctt ctcgttcgct ctcacccgcc gagcaaggtt      2580
     atggacaacc ggagaaggaa gcactggctc tggtctacgc ggtgacgaag ttccataaat      2640
     tccttttggg acgccacttc acgctgcaaa cggatcacaa accgctcttg gcaatcttcg      2700
     gttcgaagaa gggcattccg ttgcacaccg ccaaccgact gcagcgatgg gcgttgataa      2760
     tgctcaacta cgattttgac atccagcaca tttccaccaa cgatttcggt tgtgccgaca      2820
     tgctgtctcg gctgatcgat cggaccacac ggccggaaga ggaatacgtc gtagcagcaa      2880
     tcaacctgga agatgatctg gtgagtatag ttaacgactc gctagacaaa cttccagtct      2940
     ctttcacaga gttacaagac gcaacgaaga agaacagcgt tttgcaatcg gtggcaaggt      3000
     tcatcgataa aggttggccg cgagattcca agtcggtcac caccccagat gtcttgccat      3060
     acttcaaccg acgagactcg cttagcatcg ttgatggctg cgtgatgcta cacgaccgtg      3120
     tggtagttcc tcatcagttc cagaggaaaa tcctgaagca atttcatcgg ggccaccctg      3180
     gtgtggttcg catgaaggca atcgctcgca gtttcgtcta ctggcctggc atggacgacc      3240
     aaatcgagga tttcgtccgc aactgcaatc cttgctgcgt ggccggaaaa gcaccaatca      3300
     aaacgacact cgagtcgtgg cctgcaccgt cgaagccatg gtcgagaatc cacatcgact      3360
     acgccggtcc tgtcgatgga acgtacctgt tgatcgtggt ggatccgttt tcgaaatggc      3420
     cggaggtttt cgcaaccagg actacaacag ccagtaccac tgtgagactg ctttccgaat      3480
     ccttcgctac ctttggcata ccggaaacca tcgtgtccga caacggtccc cagttcgtca      3540
     gtcacgaatt ccagacgttc tgccaaggtc atggaataca gcatcttcgg acagcaccat      3600
     accatccgca atcaaacgga ttagcggaac gcttcgttga cacggtcaag aggagccttc      3660
     gaaaaatccg ttcgggggga gaaactctcg acagcgcact gcaaacgttt ttgcaagtat      3720
     accgtacgac tccgaccagt gacctcgacg ggaaatctcc ggcagaagta atgttcggca      3780
     ggcccatccg aacgatttca tcgctcttgc ttccacagcc ggagtgccgc aatccgtcat      3840
     cgaagaaaac tgaaaaacaa aatgcatcgt ttaataggaa gcatggtgca attgcgaaga      3900
     gttttcaacc cggtgactgt gtttatgcac aggtgcatca aggaaacgcc tggcattggg      3960
     aagcagccac tgtcatcgag tgtgttggca aggtcaatta taatgtttac ctggtggaca      4020
     agcaacgatt gatccgggca cacacgaacc aactcaagaa gcgctcaggt gatccagtgc      4080
     gaatagatgg tccttcgccg ctatccattt tcgtggacga gtttggacta tccgacaccg      4140
     ctccgatccg tcgtccagtc caacaaccag gtagcccagc agtatccgca ccagaatctg      4200
     gcgattccga atacttttcg gagtccgatc ccgaagatga accagcaccg caaccgactg      4260
     tcaataacaa caacaaccga ccgaggcgca tcgtgcggct accagcgaga ttcgagccgt      4320
     actacctgaa ctaagggggg aga                                              4343
//
ID   Gypsy-640_AA-LTR repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-640_;
KW   Gypsy-640_AA-I; Gypsy-640_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-216
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-216
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2143-2143 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 216 BP; 61 A; 51 C; 42 G; 62 T; 0 other;
     tgttaggtgt gatcgcagca caccgtgcaa aatttgaatt tcaattcgtt gccattagca        60
     acagattttc aatcacagca acctgcgcgt tgcccgagcc taactcggtc tcttttgccg       120
     taaaccgtag attagtgaag acgtaataaa attagctctg gttaagttag tcaaaaccac       180
     gtttttcact gtttcggctg atcccgaaac acaaca                                 216
//
ID   Gypsy-641_AA-I repbase;    DNA;    INV; 4617 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-641_;
KW   Gypsy-641_AA-I; Gypsy-641_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4617
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4617
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2166-2166 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           130..4605
FT                 /product="Gypsy-641_AA-I_1p"
FT                 /translation="MDGQQHVDANQGNVPSGRNQHPNGHPQYLQQQQLPHQ
FT                 PXQGPGNSPPGQHTQYRQQPIFPPGMSADNVIVQILQHLQQQQAVTNQLLQ
FT                 QQRESTQQQQDFLQQQEALFRNAMSSINVSVPPNPEAILDSLAGNIKEFQF
FT                 DSENHCTFAAWYARYEDLFAKDARRLDDDAKVRLLLRRLGTNEHYRYVSYI
FT                 LPSTPKDFTFDVTVQKLTALFGTTESMVKKRYSTLSITKVPTEDYVTFACR
FT                 VNKMCVEFELSKMSEQQFKCLMFVCGLKGECDADVRTRLLAKIESNDDVTL
FT                 EAMIEECQRLINLKNDTAMIEGPSGQVQAIKGGPQHNNKFRRRSKDRRKSS
FT                 PVPAEQKKTPATPCWNCGAMHFSNHCSFRNHRCSECRQLGHKEGYCSSAKR
FT                 SSKPNKQRSGKFSTKTIALSVGNVQSKRRFVQVQINGVPVRLQLDTASDIT
FT                 IVSEQVWKQLGQPTVVPATQIAKSASGEQLELEYEFACEVSFNGLAQQGRI
FT                 FVSKRSLNLLGIDLIDKFNLWSLPMDNFCNQVSGVPVDVSSLQKAYPKLFS
FT                 NSLGLCNKTKIKLALKESCRPIYRPRRPVSYAMLPTVDQELDRLERLNIIS
FT                 PVDYSEWAAPIVVVRKANGSIRICGDYSTGLNERLQPHQYPLPLPQDIFSR
FT                 LAGCTVFSTIDLSDAFLQMEIDEGSRSMLTINTHRGLYQYNRLPPGVKAAP
FT                 GAFQQMIDTMLAGLPGTSGYLDDVIVGGKNAEEHQRNLHAVLQRIQEYGFT
FT                 IRPEKCSFAQHQLGYLGLLLDRHGIRPDPIKIAAIKNMPPPKDLSGVRSFL
FT                 GAINYYGKFVANMRTLRYPLDELLKNSSSFNWTSECQQAFDKFKEILSSDL
FT                 LLTHYDPKHEIIVSADASSVGVGATISHRFPDGKIKVIQHASRALTAAEKG
FT                 YSQPDREGLAIVYAVTKFHKFIFGRRFRLQTDHAPLLRIFGSKKGIPVYTA
FT                 NRLQRWALTLLNYDFSMEYISTDKFGNADVLSRLINQHAKPDEDFVVACTA
FT                 LEEDLRSVAVNSVNCLPLSFSMVQQATKSDPVLRKVYRFVRDGWPTSKFDS
FT                 LDSELRRFRDRQEGLSIIQDCIMFGDRLVIPTSYRKRCLNQLHKGHPGVQR
FT                 MKAIARSYVYWPGLDEEIASFVKSCQHCASAARSPPQARPEPWPSTTAPWQ
FT                 RVHADYAGPLDGEFYLIVVDAYSKWPEIFPTRHITTKATINLFRSLFANKG
FT                 MPELLVTDNGTQFKSAEFSQFCNENGVRHVTTAPFHPQSNGQAERFVDTFK
FT                 RAIRKIQEGEGTIKHALDLFLLTYRTTPNPNVPDGKTPAEAMYNRSLRTSM
FT                 DLLRVPHEPLTNQANSTQPRLFQPKDTVYAKVYASNKWTWAPGIVIEKLGK
FT                 VMYNIWVHNRRMIRSHINQLRARAVSGSTIVETSSSKQQLPINILLNEWNM
FT                 SSPPVALAPTLPSMGNVEPASPTPIVVSPSSRSSSPTSTSTSSTDFQSAND
FT                 SSPAVKLPRRSSRNRRPPQWFHAYRRY"
XX
SQ   Sequence 4617 BP; 1273 A; 1222 C; 1091 G; 1029 T; 2 other;
     gtggcgacga gaacgcgagt atttcgtaag tttcgcgata gtttcgccgg gaaattcgcg        60
     tagagaaaac gcgatcgaat tttaaccacg acgccgccgc cgaacaaaag aaagcgcacc       120
     ttcagcacaa tggacgggca acagcacgtg gatgccaatc agggaaacgt cccatctggt       180
     cggaatcaac atccgaatgg acatccacag taccttcaac agcagcagct tcctcatcaa       240
     ccacmgcaag gtccggggaa cagtccgccc ggtcagcata cgcagtatcg tcagcagccg       300
     attttcccac caggsatgtc agcggacaat gtaattgtgc aaattctgca gcacctccag       360
     cagcagcagg cagtcacgaa ccagcttctc caacagcagc gcgaatccac ccaacaacaa       420
     caggattttc tgcagcagca ggaagcgctt ttccggaatg cgatgtcgtc aatcaacgtc       480
     agcgttccac ccaatccaga agccattctg gattcattag ctggtaacat caaagagttc       540
     cagtttgatt ctgagaacca ctgcaccttt gctgcctggt atgcgcgtta tgaagacctg       600
     tttgcgaagg atgcgcgcag actcgatgat gatgcgaaag tcaggttact tttgcgtcgc       660
     ctgggaacca acgagcatta taggtacgtc agctatattc ttccaagtac accgaaagac       720
     ttcactttcg atgtcacggt acaaaagctc acggcgctgt tcgggaccac cgaatcaatg       780
     gtgaagaaac gctacagtac actttccatc accaaagtcc cgaccgaaga ttacgtcact       840
     tttgcgtgtc gggtgaacaa aatgtgcgta gaattcgagc tgtcgaagat gtccgagcag       900
     caatttaagt gcttgatgtt cgtctgcggc ttgaagggag agtgcgacgc tgatgtacga       960
     accaggctgt tagcgaaaat agaaagcaac gatgacgtca ccttggaagc gatgatcgag      1020
     gaatgtcagc ggcttataaa tttgaaaaac gacacagcga tgatcgaagg cccatcgggc      1080
     caggtgcaag caatcaaggg aggtccacag cacaacaata agttccgcag acgttcgaaa      1140
     gatcggcgga aatcttctcc agtgccagct gagcagaaga aaactccagc cactccgtgc      1200
     tggaactgcg gcgcaatgca tttttcaaat cactgcagtt tccggaacca tcgatgcagc      1260
     gaatgcagac agcttggcca caaggagggt tactgctcca gtgcaaaacg gtcatccaag      1320
     ccaaataagc agcgtagcgg taagttctct acgaagacca tcgcactatc cgtcggcaat      1380
     gtccaaagca agcgtaggtt tgtgcaggtg caaatcaacg gtgtgcctgt gcgtttgcaa      1440
     ttggacacag catcggacat aaccattgtg tccgaacaag tttggaagca acttggccaa      1500
     ccaacagtgg ttccagcaac acagatcgcc aaatcagcat cgggtgaaca actcgaattg      1560
     gagtacgaat ttgcatgtga ggtgtcgttc aacggtttgg ctcagcaggg ccgaattttc      1620
     gtctccaagc gttcactcaa cttacttggc atcgatctta tcgataagtt caacctttgg      1680
     tctctgccga tggacaactt ttgcaaccag gtaagcggtg taccagttga tgtcagctcc      1740
     ttgcagaagg cgtatcccaa gctgttcagc aattctctgg gcctgtgcaa caagaccaaa      1800
     atcaaattag ccctcaaaga gtcttgtcga ccgatttacc gtcctcgtag accagtttcc      1860
     tacgccatgc tccctacagt ggatcaggag ctcgatcgtt tggaacggtt gaacatcatt      1920
     tcaccagtgg attattccga atgggcagcg ccaatcgtgg tggtcaggaa ggcaaatggt      1980
     agcatacgga tttgtgggga ctactccact gggctgaacg agcggcttca acctcaccaa      2040
     tacccgcttc ccctaccaca agatattttc tccaggttag cgggctgtac ggtattcagc      2100
     acaatcgatt tgtccgatgc gttcctgcaa atggaaatcg atgaaggttc tcgcagcatg      2160
     ctcaccatca atacacaccg aggtctgtat caatacaacc gtctaccacc aggtgtgaag      2220
     gctgctccag gagcattcca gcaaatgata gacaccatgc tagctggcct cccgggtaca      2280
     tctggctatt tggacgatgt catcgtcgga ggcaaaaacg ccgaggagca ccaacgcaat      2340
     ctgcacgcag ttctgcagcg gatccaagag tatggattca ccatacggcc agaaaaatgc      2400
     tcttttgcgc aacatcaact cgggtatttg ggtcttctgt tagatcgcca tggaattcgc      2460
     ccggatccta tcaaaatcgc agctataaag aatatgccac caccaaaaga cctctccggc      2520
     gtgcgttcct ttctgggagc cataaattat tatgggaaat ttgtcgcaaa tatgaggact      2580
     ctgcgctatc cgctggacga gttactcaaa aatagctcat cgttcaactg gacgtcggaa      2640
     tgccagcagg catttgacaa atttaaggaa atattgtcct cagacctact gctcactcat      2700
     tatgacccaa agcatgaaat aatagtgtcc gccgacgcgt catcggttgg agttggggca      2760
     actataagtc atagattccc tgacggcaag ataaaggtca tccagcacgc ttctcgggca      2820
     cttactgcag ctgagaaagg ctactcccag cccgatcgcg aaggtctagc gatagtgtat      2880
     gcagtaacca aattccataa attcattttt ggaagaagat tccggctcca aacagaccat      2940
     gcgccattac tacgaatttt cgggtccaaa aaagggattc cggtttacac ggccaaccgg      3000
     ctccaacgat gggccctcac attactcaac tacgatttct ccatggaata catctccact      3060
     gacaagttcg ggaatgctga tgtgttgtcc aggctcatca accagcatgc gaagccagac      3120
     gaagattttg tcgttgcgtg cacagccctg gaggaagatt tgaggtcagt agcggtcaat      3180
     agcgtaaatt gtttacctct cagtttcagt atggtccaac aagcaaccaa atccgatcca      3240
     gttcttcgca aagtttaccg tttcgtccga gacggttggc ccacatcaaa gttcgattcg      3300
     ctggacagcg aactacgacg attccgcgac cgtcaagaag ggttgtcaat catccaagac      3360
     tgcattatgt tcggggaccg attggtgatc cccacatcgt accggaaaag atgcttgaat      3420
     caacttcaca agggtcatcc aggtgtgcaa cggatgaaag ccatagcacg cagctatgtt      3480
     tactggccgg gattagacga agaaatagcc agtttcgtta agagctgtca gcactgtgca      3540
     tcagcagcac ggtctcctcc acaagccagg ccagaaccgt ggccatctac aactgctcca      3600
     tggcagcgcg ttcatgctga ctatgcgggc cctttggacg gagaattcta tctcatcgtc      3660
     gtcgatgctt acagcaaatg gccggaaata tttccaaccc ggcatatcac gacgaaagcc      3720
     accatcaacc tgtttcgctc gctcttcgcc aacaaaggaa tgccggagct tctcgtcaca      3780
     gacaacggca cccagttcaa gagtgcggag tttagtcaat tttgcaacga aaacggtgta      3840
     agacacgtca caacggctcc ttttcacccg caatcaaacg gccaagccga gagatttgtc      3900
     gacaccttca agcgggcgat tcgaaaaatt caggagggag aaggcactat caagcatgct      3960
     ctcgatcttt tcttgctcac gtatcggact acaccaaacc cgaacgtgcc agacggaaaa      4020
     acacctgctg aagccatgta caaccggtca ctgcgaacat ccatggatct tcttcgtgta      4080
     cctcatgaac cgttaacaaa tcaagccaat tcaactcaac cccgattgtt ccaacctaag      4140
     gacaccgtat acgccaaggt ctacgcaagc aataagtgga cttgggcgcc gggaattgta      4200
     atcgagaagc tgggaaaagt catgtacaac atctgggtcc acaaccggag gatgatcaga      4260
     tctcacatca accagcttag ggccagggct gtgtcaggct caactattgt ggaaacatca      4320
     tcgtcgaagc agcagttacc aatcaatatc cttctgaatg aatggaacat gtcatctccg      4380
     ccggtagctc tggcacctac attaccatca atgggaaacg tcgaacctgc atcgccaacg      4440
     ccgatagtgg tctccccatc atctagaagt tcaagcccta catcaacttc aacctcatca      4500
     acggacttcc agtctgctaa cgattcgtct cctgcggtca agttacctag acgctcttca      4560
     cgcaaccgaa gaccgcctca atggttccat gcgtaccgca gatattaagg agggaga         4617
//
ID   Gypsy-641_AA-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-641_;
KW   Gypsy-641_AA-I; Gypsy-641_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-255
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2144-2144 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 255 BP; 69 A; 56 C; 51 G; 79 T; 0 other;
     tgttggggac actggcaact ctaacccaga agctaccaca gggctcaccg ttggcaggcg        60
     actgtcatct ggatcgatgt cgtatgtgcc aataccataa caatcaatgt ctgtctagta       120
     ttagtatgtt ctattgtctc gcaatgaaga gaacaagttt taaagtgtcc cgcgaaataa       180
     acctcttttt agtttgtaac gttaatttag tctcaattta tttgagtagt ttcaccgcct       240
     cgtcacgtta caaca                                                        255
//
ID   Gypsy-642_AA-I repbase;    DNA;    INV; 4710 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-642_;
KW   Gypsy-642_AA-I; Gypsy-642_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4710
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4710
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2167-2167 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..4698
FT                 /product="Gypsy-642_AA-I_1p"
FT                 /translation="MFSPPGSERPGSVPPANGLQQNPAAPNHHPGVNYQQQ
FT                 QPPSIPNINPPLLQPSGVQAASHVPQGQQQQSQQNYSSVDPMMLHFFQQMQ
FT                 QQINLQFQQQQALLNQQVDMFRSALSAININVPTNPEQILDSLASNIREFR
FT                 YEPDQNVTFGGWYVRYEDLFAKDAVRLDDEAKVRLLLRKLGPSEHERYTSY
FT                 ILPKSPNEIKFDDTVSKLKSLFGMPESVISRRYRCLQVKKQATEDYKTFAC
FT                 RVNKLCVEFELGKLSEDQFKCLMFVCGLKAESDAEIRTRLLSRIEERDDVT
FT                 LEQISDECQRLLNIKHDTAMIETASSSAAVQAVKKQHSKKSFRSGRGSPES
FT                 RSSSQXGASPATPCWNCGAMHYSKDCPFQKNRCRDCGETGHKDGYCSSARK
FT                 IKSPSKRYSRTAKQATTRSVQVKNIRKRRRFVKADINGRQISLQLDTASDI
FT                 SIISEQTWRKIGQPASSPATVQAATASGKPLKLKFQCSCEVSLNGEKRIGR
FT                 FFVVKQQLNLLGLDLIDAFNLGSVPMDQFCNQVRSSSTSINSLKAAFPEVF
FT                 DDAPGLCTKAKVKFTLKEGXTPVFRPKRPVAYAMCSIVDAELDRLEKANII
FT                 TPVDFSEWAAPIVVVRKASGAVRICGDYSTGLNDALQPHQYPLPLPEDIFA
FT                 KLANCKVFSQIDLSDAFLQVEVDESCREMLTINTHRGLYRYNRLPPGVKAA
FT                 PGVFQQLVDTMLAGLECTSGYLDDVLVGGVXEEDHQRNLEAVLRRIQEFGF
FT                 TIKAEKCSFGQQQIKYVGHLIDEQGLRPDPAKVEAICNMPAPTNVSEVRSF
FT                 LGAINYYGKFVPSMRKLRYPLDELLKADKKFAWTAECEKSFTTFKQILQSD
FT                 LLLTHYNPQLGIVVSADASSVGVGATISHKFPDGSLKVVQHASRALTSAEQ
FT                 AYSQPDREGLAIIFAVTKFHKMVFGRHFTLQTDHAPLLRIFGSKKGIPVYT
FT                 ANRLQRWALQLLLYDFDIVYVNTEKFGNADILSRLINQHVKPEEDFVVASI
FT                 ITENDVRSVALDAVDALPLNFRAIQHTTRSDPVLSKVYRYIQQGWPQSKSA
FT                 IPDRDVQRFFDRSDSLSTVQGCVMFAERLVIPSSFRARCLHHLHRGHPGIQ
FT                 RMKAIARSYVYWPSIDSDITAHVKGCSSCAAAAKSPPKSAPLSWPKSTHPW
FT                 QRVHIDYAGPIEGEYFLLSIDSLSKWVEIVRTKSITASATIGILRSLFARL
FT                 GMPETLVSDNGTQFTSNEFAQFCLENGINHVTTAPFHPQSNGQAERFVDTF
FT                 KRAIKKIREGRGAIQEALDTFLITYRSTPNPSAPEGKSPSEVMFGRRIRTS
FT                 LDLLRPPTVQPSSDHQGARSFRKGDLVYAKVHSSNSWRWAPAVVLEQIGNV
FT                 MYNVWVEDRRMLRSHINQLRNRTVAGSTQTSGTTSSKAVNHQLPLDILLQA
FT                 CNLHQPSQPQSSRPSPLPTPAPSVPVAQPPSSLAAPPEHSTPLQAKPNLVW
FT                 VSPTVTEPPEPSSSVSSTTRFPSSSATSSVPSTSAEFMSANEVETAGPLPR
FT                 RSSRQRRPPIRFDPYQLY"
XX
SQ   Sequence 4710 BP; 1211 A; 1286 C; 1228 G; 981 T; 4 other;
     gtggcgacga ggaaaaaggt gaatttgaga acattttcgc gcgagtgagt gaaagtgttt        60
     cgttcacgga agaggaggag aatttcggac gacgggatgt tttcgccacc cgggagtgaa       120
     cggccaggat cagtgccacc ggcaaatgga ctgcagcaga atccagcagc tccaaatcac       180
     catccgggag tgaattatca acagcagcag ccgccgtcga ttccgaacat aaatcctcca       240
     cttctacagc ccagtggtgt acaagctgcc tcccacgtac cacaggggca gcaacagcag       300
     tcgcagcaaa attattcgtc ggtcgatccg atgatgctgc acttcttcca gcagatgcaa       360
     cagcaaataa atctgcaatt tcagcagcag caagcgctcc tcaatcagca ggtggacatg       420
     ttccggtcgg cattgtcggc gatcaacatc aacgttccga caaatccgga gcaaattctc       480
     gattcactgg cgagtaacat ccgagaattc cggtacgaac cggaccaaaa cgttaccttt       540
     ggtggatggt acgtccgtta cgaggatctg ttcgccaagg acgccgttcg actcgacgat       600
     gaagccaagg tgagactgct gctgcggaag ttaggcccgt cggaacacga gaggtacacc       660
     agttacatcc ttccgaagag tcccaacgaa atcaagttcg acgacacggt gagtaagctc       720
     aaaagcttgt tcggcatgcc agagtctgtg atcagcagac ggtatcggtg cttgcaagtc       780
     aagaagcagg ccaccgagga ctacaagacg ttcgcctgtc gagtgaacaa gttgtgtgtc       840
     gagttcgagc tagggaaact gtcggaagat cagttcaagt gcctcatgtt cgtctgtggg       900
     ctgaaggcgg aaagcgatgc ggaaatcaga acgaggttgc tcagtcgcat tgaagagcgg       960
     gacgacgtaa cgctggagca aatttcggac gaatgtcagc ggcttctcaa catcaagcat      1020
     gacacggcga tgatagagac agcgtcttcg tcggcagcag tgcaagcagt gaagaagcag      1080
     cacagcaaga agagtttccg ttccggaaga ggttcgccag agtcaagatc cagcagtcag      1140
     aakggtgcca gtccagcaac tccgtgttgg aactgcggtg ccatgcacta ttcgaaggat      1200
     tgtccattcc agaagaatcg gtgcagggac tgtggtgaaa cgggtcacaa ggacgggtat      1260
     tgctccagtg ccaggaagat aaaatctcca agcaagcggt acagcagaac agcgaagcaa      1320
     gcaacgacga gaagcgtgca ggtgaagaac atccggaagc gacgaaggtt tgtcaaagcg      1380
     gacatcaacg gcaggcaaat cagtctgcag ctcgatactg cgtcggatat cagcatcatt      1440
     tccgagcaga catggcggaa aatcgggcaa cctgcatcaa gtcctgcaac agtgcaagcc      1500
     gcaacagcgt ctggcaaacc gctgaagctg aagttccagt gtagctgcga agtaagcctc      1560
     aatggggaga agcgtatagg tcgattcttc gtagtcaagc aacagctcaa cttgcttgga      1620
     ctagacctca tcgacgcgtt caatctcggg tcggtgccaa tggaccagtt ctgcaaccag      1680
     gttcgcagtt cttccacgtc catcaactcc ctcaaagcag cttttccgga ggttttcgac      1740
     gacgcaccgg gactgtgtac gaaggcgaaa gtgaagttca cgctgaagga aggaawaaca      1800
     ccagttttcc ggccaaagcg accggtagcg tatgcaatgt gcagtatcgt cgacgccgaa      1860
     ttggatcggc ttgagaaggc gaacatcatc actccagtcg acttctcaga gtgggcagct      1920
     cccattgtcg tcgttcgcaa ggcaagcggc gcagttcgca tctgtggaga ctactccact      1980
     ggcctcaatg atgcccttca accacatcag tacccgcttc cgctgccgga ggatattttc      2040
     gctaagctag cgaactgcaa ggtgttcagc cagatcgacc tgtcagatgc gttcttgcag      2100
     gtggaagtag acgaaagctg ccgggagatg ctcaccatca acacgcacag aggtctctat      2160
     cgatacaatc ggctcccacc aggagtaaag gcggcacctg gagtattcca gcagctcgta      2220
     gacacgatgc tcgctgggct tgaatgtacg tcggggtatc tcgatgacgt tctagtcggt      2280
     ggcgtaaamg aagaagatca tcagcgcaat ctcgaagcag ttcttcgtcg tattcaggaa      2340
     ttcggattca ccatcaaggc cgaaaagtgc tcgttcggcc agcagcagat caagtacgtc      2400
     ggacatctca tcgacgagca aggtctgcgt ccggatccag ctaaagttga agccatctgc      2460
     aacatgcccg ctcctaccaa cgtatcagaa gtccgctctt tcctgggagc gataaactac      2520
     tacggaaagt tcgttccgag tatgcgcaag cttcgctatc cactcgatga gcttctcaaa      2580
     gcagataaga agttcgcctg gacagcggag tgcgaaaagt ccttcaccac cttcaagcag      2640
     atcctccagt cagacttgct tttgacgcat tacaatccgc agcttggaat agtggtttcc      2700
     gcggatgctt catcggtagg cgtcggagcg accatcagcc acaagtttcc ggatgggtcg      2760
     ctcaaggtag tgcagcacgc atccagggca ctgacgtccg ccgagcaagc ctacagtcag      2820
     ccagatcgtg agggactcgc catcatcttc gccgtgacca agttccacaa gatggtgttt      2880
     ggtcgccatt tcaccttgca aacagaccac gcaccgttgc ttcgaatctt cggttcgaag      2940
     aaaggcatcc cagtctacac ggcgaatcgg ctacagcgtt gggctcttca actgctgctc      3000
     tacgatttcg acatcgtcta cgtgaatacc gaaaagttcg ggaacgccga cattctgtcc      3060
     cggctaatca atcagcacgt caagccggaa gaagacttcg tcgtagccag catcatcacc      3120
     gagaacgatg taagatctgt agcattagat gcagttgacg cacttcctct caatttcagg      3180
     gcgattcagc ataccacccg ttccgaccct gttctcagca aggtctatcg ctacattcag      3240
     caaggctggc cacaatcaaa atcagccatt ccggaccgtg atgttcagcg gttcttcgac      3300
     cgtagcgact cgttatcaac ggttcaaggg tgcgtgatgt ttgctgaacg ccttgtgatt      3360
     ccgagcagtt tccgagcgcg ttgtttgcac catcttcacc ggggtcatcc gggaatccag      3420
     cgcatgaagg cgattgcgcg cagttacgtg tactggccgt cgatcgattc ggacatcact      3480
     gcgcacgtca agggttgcag tagttgcgca gccgcagcca agagtccgcc caaatcagca      3540
     ccattgtcgt ggcccaaatc aacgcatcca tggcaacggg ttcacatcga ttacgctggg      3600
     cccattgaag gagagtactt tttgctcagc atcgattcgc tttccaagtg ggttgaaatc      3660
     gtccgaacca aatcgatcac tgcctcagct accatcggaa tcctacggag tctgttcgct      3720
     cgtctcggca tgccagaaac gttagtmagt gacaacggca cgcagttcac cagtaacgag      3780
     tttgcgcagt tctgcctgga gaacggtatc aatcacgtta ccaccgcacc gttccatcca      3840
     cagtccaacg gtcaggcaga gcgtttcgtg gacacattca agcgagcgat caagaaaatc      3900
     cgagaaggga gaggagccat ccaagaagca ctggacactt tcctgataac ctaccgttcg      3960
     acaccaaatc cgtcagcccc agaaggcaaa tctccgtccg aagtcatgtt cgggcgccga      4020
     atacggacca gtttggatct gcttcgccct ccaactgttc aaccgtcgag cgatcatcaa      4080
     ggtgcacggt cattcaggaa aggtgatcta gtgtacgcca aggtgcactc gagcaattcc      4140
     tggagatggg caccggcagt agttttggag caaatcggaa acgtgatgta caacgtgtgg      4200
     gtagaagaca ggcgtatgct tcggtcgcac atcaaccagc tgcgaaaccg aaccgtagcc      4260
     ggtagtacac aaacttccgg tacgacttcg tccaaggcag tcaaccatca gttgcctttg      4320
     gacattctgc ttcaagcctg caacctgcat cagccaagtc agcctcaatc gtcacgtcct      4380
     tctccgctac caacaccagc accatccgtt ccggtggcac agccgccatc gtcgctcgca      4440
     gcaccgccag aacattcgac accattgcaa gctaaaccaa acctggtctg ggtgtctcca      4500
     acagtgacgg aacctcctga accgtcttct tctgtatcgt caacaacccg attcccatcg      4560
     tcctcagcaa caagctctgt tccatcaacg tcagcagagt tcatgtcagc caacgaagtc      4620
     gaaacagctg gtccgttacc tcgacgctct tctcgccaac gaagaccgcc gataaggttc      4680
     gatccgtacc agctgtatta agaggggaga                                       4710
//
ID   Gypsy-642_AA-LTR repbase;    DNA;    INV; 277 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-642_;
KW   Gypsy-642_AA-I; Gypsy-642_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-277
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-277
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2145-2145 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 277 BP; 72 A; 71 C; 56 G; 77 T; 1 other;
     tgttgggaac cactggacca acatagcgat caaccgatcg ctaccaccac tatcactact        60
     atgctcactg gtagcagcta gactgctacc cgtagatgcg cgaatagtaa acaacaacaa       120
     ctgttcagcc wttgtaatag tccgcgcgct tcccgcgata catgtatgta cttttagtta       180
     gtcgttttaa taaagtttta gcatgtttgt tttgtacgtt cgcgtctagt ttatgtgtaa       240
     atatgcacac gaccaccccg ccggcgcgta cgtaaca                                277
//
ID   Gypsy-643_AA-I repbase;    DNA;    INV; 5914 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-643_;
KW   Gypsy-643_AA-I; Gypsy-643_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5914
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5914
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2168-2168 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           992..5722
FT                 /product="Gypsy-643_AA-I_1p"
FT                 /translation="MVDEENELNGILRLLNDDTNLRKSQRIRIAKLEQAKR
FT                 LLTTIKNNYQNNIKFYTIDVWQRSIEIFRLIKQSIIMPLDIKEATSIVQTY
FT                 DGSADALEAFIDSANLLDELTDAANKTTAIKFLRTRLTGKARLGLANNYNS
FT                 IANLINDVKQRCEVKTSPEALMAKLNAIKEKDCDKLCEEVDSLTNKLSSLY
FT                 MADNIPPDVALKMATKAGVDALTKKINNHDTKIILKAGSFSTIQQAIQKVR
FT                 ENTTTDAQPQILSYRTNNRGRRNGPPQQQRFGSQQQQRYHFNTGNRGRFQH
FT                 FYSGNRGRGSRFQYPRQNYNNYQAQGQNFHPRNVYYAEVGNNQSPQQGGVG
FT                 GMAQTQIHPTTVPNQNVQLMHQPGQVVDCSLPETIKIYRIESNCSNFVSMK
FT                 LSISDSLLILLVNTGAEVSILKPDKINPNQIIDTNEKCTITGINNHTVDTF
FT                 GTIITSVNVNPQNEITHKFQIVHQEFPIATDGILGRDFFTKFHCKIXYDAW
FT                 ILTGNSNGEEFEITIEDHMNGEFILPPRCEVYRQIHVAADRDFVMPSMQIK
FT                 PGIFCANSIISANNQIVKLINTTEEVVKIDAKFYDSIIPLENFHILSLGQT
FT                 DKIDRNEKLKKELNLSNTPDECKPQLLDLCNKYNDIFALQEDSLTFNNFYE
FT                 QKIALTDPSPVYIKNYRTPESQRVEINSQIDKMLTDNIIEPSVSPYNSPIL
FT                 LVPKKSTTGDPKWRLVVDFRQLNKKIVADKFPLPRIDDILDQLGRARYFST
FT                 LDLMSGFHQIPLEANSKKFTAFSTNNGHYQFTRLPFGLNISPNSFQRMMAI
FT                 ALSGLPIECAFLYIDDIIVIGCSIEHHLKNLQHVFEKLRNYNLKLNPAKCN
FT                 FFCADVTYLGHHISAEGIQPDKSKYSVIANYPTPKNADEVRRFVAFCNYYR
FT                 RFIPYFSELAAPLNKLLQKNAKFEWTIQCKDAFVSLKENLLNPQILKFPDF
FT                 NKTFILCTDASKIACGAVLSQLHGDIELPVAYASRTFTKGEQNKATIEQEL
FT                 LAIYWAINYFRPYLYGRRFLVKTDHRPLVYLFSMKDPASKLTRIRLDLEEY
FT                 NFDVVHVSGKENVGPDALSRIEIDSEQLKSLSILPVQTRSMSKRKTPELDE
FT                 PQSHKANETDHLCAYDSVNNLDAFSLPKLTFESINNIINVRIMNKNMKNDF
FT                 ALAQFHYNYIDANILKTIIETVDTMTKKLNIRKIAIANNNLIFQRVNKQIF
FT                 KEICNTTLKNTKIVLYTTAQVITDTEIINNLIKEYHDSPTGGHVGTSRLYK
FT                 RLRSNYYWNDMLNTIRFYIKNCSKCIQNKHSKHTKEKLIKTETPMKCFDLI
FT                 SIDTVGPFTKSQHGNRYAITIQCELSKFVVIEPIPDKQAKTLAKAFVEKFI
FT                 LVHGCPLQIKTDLGTEYKNEVFEEINKLLSIDHKFSTAYHHETVGSLERNH
FT                 KVLNEFLRSFVNAEYDDWDQWIPYYCFCYNTSPHSDHQYTPFELVFGRQPN
FT                 YPSSLKNVNTIDPVYNIENYHNELKFKLKTAAVKARELLDVAKQKRISTTS
FT                 SSPINITIGDTVYLQKENRRKLDQVYTGPFKIININHPNVTIEDNSKNHQI
FT                 VHKNRIIKKQ"
XX
SQ   Sequence 5914 BP; 2152 A; 1130 C; 1064 G; 1564 T; 4 other;
     tggcgacatc gtgmcagagt gtttgatcta atgagggaag tgaagtgaac caatgtgaac        60
     caagtgattg aacaaatttc gaattgagat tgaaaacagt gatcgactag aactgatagc       120
     tgagaaacgc gccacgcaaa aggaaaagtt taacaattgg tgcgcgagta aattaatcaa       180
     tcacgatggg ttggttttcc aatgaggagg tcattacgac caacaacgcg gtgtgcccgc       240
     aggaaaacca tcaccatgca caaacgatcg cgctttgtgc actagcagcc gtagccgttg       300
     gctacgtgct cataaaatcg ctggtgaaat tgcacagcag tcacaccatt agagtggctg       360
     aacgggtaac acgatcggca aacccgcaag tataataaca actagaaaat gaccgcaaca       420
     agcaccggtg ataaaagtga caattcttaa tgacgacgtg aacattgatg catacagtga       480
     acagtgggca aaaccgaact caatttccca cataaatcat cacggtcgaa tttaaaatgt       540
     gcgtttatgg atggtcaagt aaagagtgac aatttgacgg cgtgaataaa cagtgtgtgc       600
     tcatagttag ccaatcagaa aactggtgcc gagaagaata ttagaaaagc agattggaga       660
     ggaacagatt ggaggtgacg attggagatc tgagaggaac gctgacgaag gatgagaatg       720
     ctgaagaaac ccattacctg acataccgac ggtgttaaaa tgatgaaagg agaacggcgt       780
     agtcatcgac atcaatgtga gtgactcaat atttaaacta tttgatttat ttcatagcaa       840
     atgtaacaaa gtgtcaacta cagactttat ttcgatgtac gaactgaacg atcagtagat       900
     tattaattta atgtgtttaa cgaattgagt gaatgatatg taactgtttt ttttttaacg       960
     attcttataa actgtagttg gtagatttat tatggtagac gaggagaatg aactcaatgg      1020
     aattttaagg ttactaaacg acgatacaaa tttacgcaaa tcacaacgaa ttcgtattgc      1080
     aaaacttgag caggctaaac gtttattaac cacaataaag aacaattatc aaaacaacat      1140
     caaattttat acgattgacg tttggcaacg ctcaattgaa atattcagat tgataaaaca      1200
     atcaataatc atgccattgg acataaaaga agccacatcc atcgtacaga cgtacgacgg      1260
     atcggcggac gctttagaag cgttcatcga ctcggcaaat ctacttgatg agctaacgga      1320
     cgcagcaaac aagaccacag caatcaaatt tcttcgaacc agactcactg gcaaagccag      1380
     attgggtctg gctaataatt acaactcgat tgcaaattta atcaatgatg ttaagcagag      1440
     gtgtgaggta aagacctcac cagaagcttt aatggcgaaa ttaaacgcca tcaaagaaaa      1500
     ggattgtgac aagctatgcg aggaggtgga ctcactaaca aacaaattgt catccttata      1560
     catggctgac aatattccac ctgacgttgc tctaaaaatg gcaaccaagg ccggggttga      1620
     cgccctcaca aagaaaatca ataaccatga taccaaaatt attttgaagg ctggatcgtt      1680
     cagcacgatc cagcaagcca tccagaaggt acgtgaaaat accactacgg atgcgcagcc      1740
     acagatattg tcctaccgga caaataacag aggacgcagg aatggtccgc cacaacaaca      1800
     aaggtttgga tcacagcagc agcaaagata tcattttaac acaggaaacc ggggaaggtt      1860
     tcaacatttt tattctggaa atcgcgggag aggatcgcgt ttccaatatc cgcgccaaaa      1920
     ctacaataac tatcaagcgc aagggcaaaa tttccaccca cgtaatgttt actatgcgga      1980
     agtgggaaac aaccagtccc cccaacaggg tggagttggg ggcatggcac aaactcaaat      2040
     ccatccaaca actgtaccca accaaaatgt acaattaatg catcaaccag gccaagttgt      2100
     cgattgctca cttccagaga cgataaaaat ttatcgaatt gaatcgaatt gctctaattt      2160
     cgtgtccatg aaattaagta tctccgattc tttactgatt ttactggtca acacaggagc      2220
     tgaggtatct attttgaagc ccgacaaaat taacccaaac caaattatag acacaaatga      2280
     aaaatgcact attacaggaa ttaacaatca tacggtagat acgtttggta ctatcataac      2340
     ttcagtcaat gtaaatcccc aaaatgaaat tacgcataaa tttcaaattg ttcatcaaga      2400
     attccccata gccactgatg gaattcttgg acgtgatttt tttacaaaat ttcactgcaa      2460
     aatmgaktat gacgcatgga ttctaactgg aaattctaac ggagaggagt ttgaaatcac      2520
     tatcgaagac cacatgaacg gagaatttat tttacctcca cgatgtgagg tgtatagaca      2580
     aattcacgtt gcggccgata gagattttgt tatgccctca atgcagatta aaccaggaat      2640
     tttctgtgcc aactctataa ttagtgcaaa taaccaaatw gtaaagttaa taaataccac      2700
     tgaagaagtg gtgaaaatcg atgcaaaatt ttatgattca ataataccat tggaaaattt      2760
     tcacattctg tctttaggtc aaacagataa gattgatcga aatgagaaat tgaaaaaaga      2820
     attaaacctt tcaaacactc ctgatgagtg taagcctcaa ctgcttgatc tatgcaataa      2880
     atataacgat atttttgcgt tacaagaaga ttccctaact tttaacaatt tttatgagca      2940
     aaaaattgct ttgacggatc ccagtccggt ttacataaaa aattaccgga caccggaatc      3000
     ccaacgtgtg gaaattaata gccagattga taaaatgtta acggataata taatcgagcc      3060
     ttcggttagt ccgtataact ccccgatttt attagtaccg aagaaatcca caacgggtga      3120
     cccaaaatgg agactcgttg ttgatttcag gcaacttaat aaaaagattg tggcagataa      3180
     attccctcta ccaagaatcg atgatattct cgatcaactc ggtagagcaa gatatttttc      3240
     aacacttgac ttgatgtcag gtttccacca gattccttta gaagcaaatt ccaagaaatt      3300
     tactgccttc tccacaaata acggtcatta ccaattcacg cgtttaccgt ttggtttgaa      3360
     tatctcaccg aacagtttcc agcgtatgat ggcaatcgcc ctaagtggat tacccattga      3420
     atgtgctttc ttgtacatag atgacatcat tgtcattgga tgttcgattg agcaccattt      3480
     gaaaaatttg caacatgttt tcgaaaagtt aagaaactac aaccttaagt taaaccctgc      3540
     gaaatgtaat ttcttctgtg ctgatgtcac ttatttagga catcacattt cagcagaggg      3600
     tattcaaccg gataaaagca aatactcagt aattgccaat tatccaactc ctaaaaatgc      3660
     ggacgaagtc agaagattcg tcgcgttttg taattattat aggcgattta ttccctattt      3720
     ttcagaatta gcagcacccc tcaataaatt gctgcagaaa aatgctaaat ttgagtggac      3780
     aatacaatgc aaagatgcat ttgtgtcctt aaaagaaaac ttattaaacc cacaaatcct      3840
     gaaatttccg gatttcaaca aaaccttcat cctatgtacc gatgcctcta aaatagcttg      3900
     cggagcagtc ttatcgcagc ttcacggaga cattgaacta cccgtagcct atgcgagtag      3960
     gacgttcact aaaggtgagc aaaacaaagc tacaattgaa caagaattgt tagccattta      4020
     ctgggccatt aactacttta ggccatacct atacggacga cgatttttgg tgaaaacaga      4080
     tcatcgtccc ttagtctatt tattctcaat gaaggatccc gcttcgaaac tgacgagaat      4140
     tcgattagat cttgaagagt acaattttga tgttgtgcat gttagtggga aggaaaatgt      4200
     tggtcctgac gcattatcac gcattgagat cgattctgaa caacttaaga gcttatcaat      4260
     cttgcccgtt caaaccagat ccatgtctaa gagaaaaact cccgaacttg acgaaccgca      4320
     gagtcacaaa gcgaatgaga ctgatcacct ctgtgcttat gattctgtaa acaacctgga      4380
     tgcattcagc ctaccgaaac tgactttcga aagtattaac aacattatta acgtacgaat      4440
     aatgaataaa aatatgaaaa atgactttgc tctagcgcaa tttcattata attacatcga      4500
     tgcaaatata ctaaaaacaa ttattgaaac agtcgacact atgaccaaaa agttgaatat      4560
     cagaaaaata gcaattgcaa ataacaactt gatattccaa cgagtaaata agcaaatttt      4620
     taaggaaatt tgtaatacta cactgaaaaa tacaaaaatc gtgctgtaca caaccgcaca      4680
     agttataaca gatactgaaa tcataaacaa tctcatcaaa gagtaccacg acagccctac      4740
     tggaggacat gtaggcacgt caagactcta taaaaggtta cgttctaatt attattggaa      4800
     cgatatgcta aatactatta gattttatat taaaaactgt tccaaatgta tacaaaacaa      4860
     acattcgaag catactaaag aaaaattaat taaaacagaa acaccaatga aatgttttga      4920
     cttaatatca atagacactg ttggaccttt taccaaatct cagcatggca atcgttatgc      4980
     cataactatt caatgtgaac tttccaaatt cgtagtaata gaaccaattc cagataaaca      5040
     agccaaaact ttagctaaag cattcgtgga aaagtttata ctagtccatg gatgcccact      5100
     tcaaattaaa acagaccttg gtacggaata taaaaatgaa gttttcgaag aaattaacaa      5160
     attgctttca atagatcaca aattttcaac ggcttaccat catgaaacag ttggtagcct      5220
     cgaacgaaat cataaagtct tgaacgaatt cctaagaagc tttgtaaatg cagaatacga      5280
     tgattgggac caatggattc catattattg tttctgctac aatacttctc cacattccga      5340
     tcaccaatac acaccttttg aattggtatt cggaagacag ccaaattacc cttcatctct      5400
     aaaaaacgtt aacactatcg atccagtata taatattgaa aattatcata atgagcttaa      5460
     attcaagcta aaaacagcag cagtaaaagc cagagaatta ctcgatgtag caaaacagaa      5520
     aagaatttct acaactagtt ccagtccaat aaacataaca ataggagata ctgtttatct      5580
     tcaaaaagaa aatcgtagga agctagatca agtttataca ggtcctttca aaattattaa      5640
     cataaatcat cctaatgtta caatagaaga caattcaaaa aatcatcaaa tagtacataa      5700
     aaacagaatt atcaaaaaac aatagtctga cagttgaaac cataacaaaa taataataat      5760
     aaaaaaaaat gtaataaaaa gtgtaatttt aagaattcac aacaatggaa ccttacatat      5820
     taagaataag agattcatcg agaaagcatt caattttttt tcaattccga gaataatttc      5880
     gctatgctac attattcttc caaaaggggg aagg                                  5914
//
ID   Gypsy-643_AA-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-643_;
KW   Gypsy-643_AA-I; Gypsy-643_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-297
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-297
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2146-2146 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 297 BP; 96 A; 63 C; 54 G; 84 T; 0 other;
     tgtggtgtaa aacttctaac cggcaatgtt gatttcgcaa cattgtattt tgtaaaaaca        60
     agcaactgct gaactgctat gttttaattc gccggtataa acatccgctg cgaaattaaa       120
     acatacgcaa gcattttctt aatcaggtca cccaagtggt tgaccacccg tgtgttgcat       180
     tctctatggg tctcgatgga aacgaactca acaataaaat cattcgataa ccaaaagtct       240
     tggagtgcgc ttcaatcaat gaagaagtcc ctgcagtcac aaaacaagtt tattaca          297
//
ID   Gypsy-644_AA-I repbase;    DNA;    INV; 4551 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-644_;
KW   Gypsy-644_AA-I; Gypsy-644_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4551
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4551
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2169-2169 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           253..852
FT                 /product="Gypsy-644_AA-I_1p"
FT                 /translation="MYIQSKIPTDVATKMATKAGVDALINGITDNETKIIL
FT                 KANEFSTIQSAIQKVNENIGRSAQVLTVNARRGLPRKNNCYNNNHGNYCNN
FT                 YGNRGYNRNSYNNRQSRTNYNEGYNQRNHYSPRGRGNFHNNRGFTHNSTQN
FT                 NQRNPRVYYTQSNQHPTNQQPQLVPNIAYQQPSTLQTIPQSGAIQHLQPHP
FT                 LGGIQGQFTL"
FT   CDS           708..4448
FT                 /product="Gypsy-644_AA-I_2p"
FT                 /translation="PTSDESATAARAQYCISATKYPTNHPTVWSNTTFAAA
FT                 PFRRNSRAVYTVNVSASNFVTIQTNVANQPCTFIVDTGADVSILKTNYITT
FT                 NITYNQQNQSTLRGISAQEISSLGSVNINLILDNFSLPHTFQLMNSTFPIP
FT                 TDGILGRDFLANFTCNIDYNSWLLTINVNNYSLVVPIQNNLNGTIILPARA
FT                 ETIRHISNLNLDRDALIESSEILPGVFCSNTIVSKDAPYVRIINTNEENII
FT                 LTHFTPRIHSLENFHVYKITNNDNIDRNKSLEKELNFENLPNSIRTPLFKL
FT                 CSEYNDIFSLQNDLLTCNNFYRQKIRLQDEAPVYIKNYRNAHSQRDEICQQ
FT                 VDKLIENDIIEPSVSSYNSPILLVPKKSTTSDPKWRLVVDYRQLNKKLLAD
FT                 KFPLPRIDDILDQLGRAKYFSTLDLMSGFHQIEIDKNSREFTAFSLQERGH
FT                 FQFKRLPFGLNISPNSFQRMMAIALSGLSPECAFLYIDDVIVVGCSVEHHL
FT                 KNLRRVFECFRQRNLKLNPAKCNFFKAEVTFLGHKITDRGILPDSSKFDVI
FT                 KNYPKPQNADQVRSFVAMCNYYRRFIPNFAKTCSCLNKLLRKDVTYKWTDE
FT                 CQSAFENLKSMLLSPKILQYPDFQKTFIITTDASDLACGAVLSQLHENNDL
FT                 PVSFASRAFTKGEANKHIIEKELAAIHWAIMHYRPYLLGRHFTVRTDHRPL
FT                 VYLFGMKNPSSKLVRMRTDLEEFDFDIEFVPGKSNVVADALSRIKLDSNEL
FT                 KKMNILQVQTRSMTSIPCLANCDEKLKIMKPDKLRVYDAINNAQVTNIKKL
FT                 AFQILYNENLPVVNVIIFDKKFKNGLTLALGLELNLRNLKNVFQIINDFFK
FT                 SSTSNNTLSISKGDAIFNYISLNDFKHTGNKILKTVQIIIFDPPKIVSDPT
FT                 EIQRLLLHNHSSPTRGHTGISRLYKKLRNSYVFPNMKYTISKFVKSCQQCK
FT                 LNKHFVPVKEKLIKTTTPVKPFDIVSIDTIGPFSLTSNGNRYAVTIQCDLS
FT                 KYIILVPIPDKSSYTISKAIVEHCILVYGPMSAIRTDQGTEYKGIFDSICD
FT                 LLKLNHICSTAYHPQTIGSLERNHRCLNEYLRSFINDLRTDWDNWLPFYSY
FT                 CYNTTPNSSHAYSPFEIIYGKPVHKFDHIDLNSVDPIYNYDSYVHELKHKL
FT                 QLIHKYIFDKIDETKLSRTQKLNSNIKPTSLSLNDTVYLKIEGRKKLDSVH
FT                 NGPFKIIKLDGSNAEIKHEISNQTIIVHKTRLVKQNN"
XX
SQ   Sequence 4551 BP; 1677 A; 855 C; 715 G; 1304 T; 0 other;
     aaacgctgac caagttagaa gttttgtggc aatgtgtaat tattatagaa gatttatccc        60
     caattttgca aaaacttgta gttgtttgaa taaactactt agaaaagatg ttacatataa       120
     atggacagac gaatgtcagt ctgcttttga aaatttaaag tctatgttgc tttcaccaaa       180
     gatacttcaa tacccggatt tccagaaaac tttttggaac aagttgaagc gctttcaacc       240
     caattgacca ccatgtacat ccaaagcaag attccaacag atgttgccac caaaatggca       300
     acgaaagctg gagtcgacgc cttaatcaac ggaataacgg acaatgaaac taaaatcata       360
     ttaaaggcta atgaattttc aacaattcaa tcagccatac aaaaggtgaa cgaaaatatt       420
     ggccgatccg ctcaagtatt gacagtaaat gctaggagag gattgccgcg gaaaaacaac       480
     tgctacaaca ataatcatgg caactactgt aacaactacg gtaatcgcgg ttacaaccgc       540
     aacagttaca ataatcgcca aagccgaacg aattacaatg agggttacaa tcagagaaat       600
     cattattctc cacgaggacg cggaaatttt cacaataatc gcggatttac tcataattcg       660
     acacaaaata atcaaagaaa tccacgcgtt tactacactc agtctaacca acatccgacg       720
     aatcagcaac cgcagctcgt gcccaatatt gcatatcagc aaccaagtac cctacaaacc       780
     atcccacagt ctggagcaat acaacatttg cagccgcacc ctttaggcgg aattcaaggg       840
     cagtttacac tgtgaatgta tctgccagta acttcgttac aattcaaaca aatgtagcaa       900
     atcaaccctg cacctttatc gttgatactg gagcagatgt atcaatctta aaaactaatt       960
     atattaccac aaatattacg tataatcaac aaaatcagag taccttgaga ggtatatcag      1020
     cccaagaaat ttcaagtctt ggcagtgtaa atataaactt aattttagat aatttcagtt      1080
     taccgcacac atttcaatta atgaatagta cgtttccaat acctactgat ggtatattgg      1140
     gacgtgactt tcttgcaaat tttacatgta atattgacta taattcttgg ttattaacga      1200
     taaatgtaaa taactattct ttagtagtac cgattcaaaa caatctgaat ggtacaatta      1260
     tcttacccgc tcgtgcagaa acaataagac atataagcaa tttaaaccta gatcgagatg      1320
     ctttgataga atcttcagag attttacccg gagtattctg cagtaatact atagtttcta      1380
     aggatgctcc atatgttaga ataattaaca ctaacgaaga aaatataata ttaacgcatt      1440
     ttacaccacg tattcattca ttagaaaatt ttcacgtata caaaattaca aataatgata      1500
     acattgatag aaataagtca ttagaaaaag aattaaattt cgaaaattta ccaaattcta      1560
     ttcgtacacc actttttaag ctctgtagcg aatataacga cattttcagt ctccaaaatg      1620
     atctcctcac ctgtaataat ttttataggc aaaaaattag actgcaggat gaagctcctg      1680
     tatacattaa aaattatcgc aatgcacata gccaacgtga tgaaatttgc caacaagttg      1740
     acaaattaat tgaaaacgat atcattgaac cgtcagtatc aagttataat tccccaatac      1800
     ttctagtgcc aaaaaagtcc acaacctctg atccaaagtg gagattagtt gtggactacc      1860
     gtcaactaaa taaaaaattg ctagctgata aatttcccct gccgagaatc gatgatattc      1920
     tcgatcaact cggcagagcc aaatattttt caactttaga tttaatgtct ggtttccacc      1980
     agattgaaat cgataaaaac tcaagagaat ttactgcatt ttcccttcaa gagcgaggac      2040
     atttccaatt taagcgattg ccgtttggtc ttaacataag cccgaacagc tttcaaagaa      2100
     tgatggctat tgcactaagt ggcctgagtc ccgagtgtgc atttttgtat attgacgacg      2160
     tgattgtcgt aggttgttca gtcgaacacc atttgaaaaa cttaagaaga gtatttgaat      2220
     gctttaggca gagaaattta aagcttaacc ctgctaaatg caacttcttt aaagcagaag      2280
     tcacattttt agggcacaag atcactgata gagggatcct gcccgatagt tcgaagtttg      2340
     atgtcattaa aaattatccc aaaccacaaa acgctgacca agttagaagt tttgtggcaa      2400
     tgtgtaatta ttatagaaga tttatcccca attttgcaaa aacttgtagt tgtttgaata      2460
     aactacttag aaaagatgtt acatataaat ggacagacga atgtcagtct gcttttgaaa      2520
     atttaaagtc tatgttgctt tcaccaaaga tacttcaata cccggatttc caaaaaactt      2580
     tcatcattac cacagatgca tcggatttgg catgcggtgc ggtattatct caattacacg      2640
     aaaacaatga tctacctgtt tctttcgcca gtcgcgcgtt tacaaaaggc gaagcaaaca      2700
     agcacatcat tgaaaaagaa ttagcagcta ttcattgggc gataatgcac tatcgaccat      2760
     atttattagg aagacatttt actgtgcgta ctgaccaccg accgttggtt tacctgttcg      2820
     gtatgaaaaa cccatcatca aagttagttc gaatgagaac tgatctcgaa gaatttgact      2880
     ttgatattga gttcgtacca gggaaaagta acgtcgtagc agacgcctta tctagaatta      2940
     aattagactc taatgagctc aagaaaatga atattctgca agtgcaaaca aggtcaatga      3000
     caagcatacc ttgtttagcc aattgcgatg aaaagttgaa aataatgaag cctgataaac      3060
     ttcgagtata tgacgcaata aataatgcgc aagtaacaaa tataaagaaa cttgcatttc      3120
     aaattttata taatgaaaat ctaccggtag taaatgtaat aattttcgat aaaaaattta      3180
     aaaatggcct aactctagcg ttgggactag aacttaatct aagaaacttg aaaaatgttt      3240
     ttcagattat taatgatttt tttaaatcat ccacatccaa taatacttta tcaatttcaa      3300
     aaggtgatgc tatattcaat tacataagcc taaatgactt taaacatact gggaacaaaa      3360
     ttcttaaaac agttcaaatt attatttttg atccacccaa aatagtatca gaccctacag      3420
     aaatacagag acttttacta cataaccact cttcacccac tagaggacat actggtatat      3480
     cccgattgta caaaaaatta agaaattctt atgtttttcc aaacatgaaa tacactatca      3540
     gcaaatttgt taaatcctgt caacaatgca aattgaataa gcattttgtc cctgtaaaag      3600
     aaaagttgat caaaacaact acaccggtta aaccatttga tatagtttca atagatacaa      3660
     tcggaccgtt cagtttaact tctaacggca acagatatgc tgtgaccatt caatgtgatc      3720
     tcagcaaata cattattctt gttcccattc ccgacaaatc atcatataca atttccaaag      3780
     caatagtcga acattgtatc ttagtctatg gtccaatgag tgctatccgc acggaccaag      3840
     ggaccgagta caaaggaatt tttgatagca tatgtgatct tttaaaattg aatcatatct      3900
     gctcaacggc atatcaccct cagacaatag gatcgttgga aagaaatcat aggtgtttga      3960
     atgaatacct acgatcgttc atcaatgatc tgagaactga ctgggataat tggctaccct      4020
     tctatagtta ttgttacaat acaactccta actcgtctca cgcttactct ccatttgaaa      4080
     ttatttatgg caaacccgta cacaaattcg atcatataga cctcaactct gtagacccaa      4140
     tctataatta cgattcatat gtacacgaac taaaacataa attacaatta attcataaat      4200
     acatctttga taaaatagac gaaacaaaac tatcgagaac acaaaaactc aacagtaata      4260
     taaaaccaac aagccttagt ttaaatgata cagtatattt gaaaatagaa ggaaggaaaa      4320
     agcttgatag cgtacacaat ggacctttta aaatcataaa attagatgga agtaatgccg      4380
     aaataaaaca tgaaatttca aatcaaacaa taattgtaca caaaacaaga ttagtgaaac      4440
     aaaataattg aaaaaaaatg taaacccaaa atgataagtg agtaaacgac aaagcaacga      4500
     attttatttt tcatttttga atggttccac cattcttcta aaggagggag g               4551
//
ID   Gypsy-644_AA-LTR repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-644_;
KW   Gypsy-644_AA-I; Gypsy-644_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-400
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-400
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2147-2147 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 400 BP; 127 A; 107 C; 46 G; 120 T; 0 other;
     tgtagtaata caacaccaca atctcacccg cttcatattt ctacgaagca catactcata        60
     aattaaacac ttcctctatt tgacacagca acaacctaaa atctgaccac ccatatttga       120
     cctactggga aagtctcagc aggccaagtt tacacaaact atattttgcc ttccttatta       180
     tgatacctcc aaattgttac catatgtgca caacaagcac tgtccgcatt tacgacatct       240
     gtttatcaaa tataccaagc gttgtgctca ctcctcgttc aaccattctt taccacatta       300
     ggttaccact taagccttct ccgaaataaa gattcattcg ttaaccatca ctcagttagt       360
     taagtcaagt ttaatatccg aagtccggta acctattaca                             400
//
ID   Gypsy-645B_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.04, Created)
DT   07-MAY-2019 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-645B_;
KW   Gypsy-645B_AA-I; Gypsy-645B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-159
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2116-2116 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 159 BP; 61 A; 28 C; 25 G; 45 T; 0 other;
     tgtagtaatt aagtaaagta gataactaaa catctcacac atcacagcca cagacttaac        60
     atagtagtca tggactttag agataggata aatgtcagac ttagggatca ttctgtaata       120
     aaccatcaac ctgataatac gtgttattat tacgcacta                              159
//
ID   Gypsy-645_AA-I repbase;    DNA;    INV; 4120 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-645_;
KW   Gypsy-645_AA-I; Gypsy-645_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4120
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4120
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2148-2148 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..537
FT                 /product="Gypsy-645_AA-I_1p"
FT                 /translation="MHSGEASEASMSFGTIHHAGIQNSSCSVKLDELQIFL
FT                 PHFEGNEGENVDDFIRSVEHTRKTFHVGEEIMKLLIFKQLKGNAQKWLNSY
FT                 QNRFSMSLSEFFNLLKTTFSVSMVTFELRKKT"
FT   CDS           527..4111
FT                 /product="Gypsy-645_AA-I_2p"
FT                 /translation="EKKLELRRWRRHESFQDYYIEKRMLASPLNLGEMELI
FT                 EYIIEGIPDKNLKNFAQISGFKSVISLLRSFSSIRLPPHEAFKPIVCYRCN
FT                 FPGHVAAQCRTTKPQNFKDSIEGSRSRQHRSEKTMKIVAVKTQLADKVVGF
FT                 KNNGLVDIHFPHFNTKFEALFDTGSPVCLIRFGLVEKGKIRKYDERISYKG
FT                 IGGTRLNILGCLVTDVLIQNLSLNIEFLVVPDLTMQSYDVIIGRNVIMQPG
FT                 MRTVIENGQIQIFKTPVFESEQIEPPKKVTETVSSIDFQKNLENTGDIDKN
FT                 HLVNFEHVLKKYYFEFLRPLKPEIDYEMKIILKSAAPFHFKPRRLSQTDKL
FT                 KVDQKVDELLKSGVIKESDSPFASPIVVIPKKDGDIRLCVDYRKLNKDTFR
FT                 DNYPLPLLEDIFDKLKGKRIFSILDLKSGFHQIKIASECTKFTSFVTPSGQ
FT                 YEYTCVPFGLCNAPAVFQRFVNKIFKKLIQEGKICVYIDDILIASATMEEH
FT                 LETLKEVLTILSNNLLELNFDKCKFCFNEIEYLGYIINEFGRKPSKSHIES
FT                 VLEFPIPKNAKDVQRFLGLTSYFRKFVQNFALIARPLYNLLKKDAVFAFGD
FT                 VEMNSFLQLRNKLVSAPILALYDTKAETQLHCDASSFGFGAVLLQKQSDGK
FT                 FHPVSFFSKKTDEYESKLHSFELETLAVVHAIKRFHVYLSGTKFKVYTDCN
FT                 ALAQTLAKKEINPKISRWALFLENYNYTLEFRDGIKMRHVDALSRLAMNEG
FT                 KIFSKNNEGEQVSSVEAVSVLNTEDIERNVILAQEQDEKLKNIKTHLESHT
FT                 FPNFELKNGILFRNDNNKLLLVIPKIMIDNIIKICHDNLGHIGIEKTILEI
FT                 KKFYWFSNMRKIVKKYISNCLSCIFYSPADTKKEGFLKNIDKGEKPFNTIH
FT                 IDHYGPIQLRSSKGFKFILVVVDAFTKFVKFYPTKTTNTEEVIKNLSIYMN
FT                 HYSRPKRIISDRGSCFTSDKFEKFCVDHLVEHIKTAAYTPEANGQVERMNR
FT                 TLTPMLAKLIHDTDKRWDILLPNVEFIYNNTFNRSIKNYPSILLFGQLQNT
FT                 FNKVEFNLETLVKNNQENIEFRNLVDIRKEAKDQIEKLQAYNKTKVDKKRK
FT                 GVQDYKEGDFVVIKTVDTHKLSNKFKGPYVIKQILPNDRYLVTDIDGFQVS
FT                 SLPYSSVCSPGNMRKWLSFPHIFTDDDNDEDIVESG"
XX
SQ   Sequence 4120 BP; 1512 A; 609 C; 735 G; 1264 T; 0 other;
     tatcagaagt gggatacacg ctaaaaaaat cctgcacggt cgcaatcctg aacaatattg        60
     gacgttcgtc aacgatcgga tctcgaaata ccagaggata tcggaagaag tcttccttct       120
     ttggttggag aaattcaatt cgatttgcta agtacgaagt caagcagttt gaaggaaatg       180
     cattcaggag aagcatcaga agcatcaatg tcgtttggta ctatccacca tgctgggata       240
     cagaactcaa gttgttccgt gaaattggac gaacttcaaa tttttcttcc acacttcgag       300
     ggaaatgaag gagaaaatgt cgacgatttt ataagaagtg ttgaacatac gcgaaaaaca       360
     ttccatgttg gagaagaaat tatgaaatta ctaattttca agcaactgaa aggaaatgcc       420
     cagaaatggc tgaattctta tcaaaaccgt ttttcaatga gcttatctga atttttcaac       480
     ctcctcaaga caacattttc ggtatccatg gtaacgtttg aattgagaaa aaaaacttga       540
     acttagaaga tggagaagac atgagtcgtt tcaagattat tacattgaaa aaagaatgct       600
     ggcctcacca ctgaaccttg gagaaatgga gttgatcgag tatatcattg aagggattcc       660
     agacaaaaat ttgaagaact tcgcacaaat ctctggattc aagtcggtga tttctttatt       720
     gcggtcattt tcatcaattc gccttccacc acatgaagct ttcaagccaa tcgtatgcta       780
     cagatgtaac ttccctggtc atgtcgcagc tcaatgtcgt acaacaaaac cacagaactt       840
     taaggacagc atagagggta gtcgatcaag acaacatcgt tcggagaaaa caatgaagat       900
     tgtagctgtt aaaacgcaat tagctgacaa agttgtagga ttcaaaaaca atggactggt       960
     agatatacac tttccacatt ttaacactaa atttgaagca ttgttcgaca caggtagccc      1020
     ggtttgtctg atacgctttg gtttagtaga aaagggcaaa atacgcaaat atgatgagag      1080
     aatttcatat aagggtatcg gaggaaccag gcttaacatt ctgggatgtt tagtaactga      1140
     tgttttaatt caaaatttat ctcttaatat tgagttttta gttgttcctg atttgacgat      1200
     gcaatcatac gatgttatta ttggtagaaa cgttataatg caacctggga tgcgcacggt      1260
     tatagaaaat ggccaaatac aaattttcaa aactccggtc ttcgaaagtg agcaaattga      1320
     accaccaaaa aaggtaacag agactgtaag ttctattgat ttccaaaaaa atttagagaa      1380
     tactggtgac attgataaaa atcatttggt aaattttgag catgttctta aaaaatatta      1440
     ttttgaattt ttacgacctc tgaaaccaga aatagattat gagatgaaaa ttattctaaa      1500
     atctgcagca ccctttcatt ttaaaccaag aagactttca cagacagata aattaaaagt      1560
     tgaccagaaa gttgatgaat tacttaaatc tggtgtcata aaggaaagcg attctccttt      1620
     cgctagtcca attgtagtta ttcctaaaaa agatggagat attagactct gtgtagatta      1680
     tagaaagctt aataaagata cttttagaga taattatcca ttacctttat tagaagatat      1740
     ttttgataaa ttgaaaggaa aaagaatatt ttcaatttta gatcttaaat caggattcca      1800
     tcagattaaa atagcttcag aatgtacgaa attcacatcg tttgtaactc cgagtggtca      1860
     atatgaatat acttgtgttc cttttgggct ttgtaatgcc cctgctgttt ttcaacgatt      1920
     cgttaacaaa atttttaaga aattaattca ggaaggaaaa atttgtgttt acattgatga      1980
     tattttaata gcttcggcaa ctatggaaga acatttagaa actctaaaag aagtattaac      2040
     aattttgagt aacaatttat tagagcttaa ttttgacaaa tgtaaatttt gttttaatga      2100
     aattgaatat ttaggatata taatcaatga atttgggcgt aaacctagta aatcacatat      2160
     tgaatccgta ttggagtttc caataccaaa aaatgccaaa gacgttcaga gatttttggg      2220
     tttaactagt tattttcgga aatttgttca aaattttgcc ctgatagcaa gaccacttta      2280
     taatttgctt aagaaagacg cagtttttgc atttggtgat gtagaaatga attcgttttt      2340
     gcaactcaga aataagcttg tatctgcacc aatattagct ttatacgaca ctaaagctga      2400
     aacacaattg cactgcgatg ccagctcgtt tggatttgga gctgttttgt tgcaaaagca      2460
     aagtgatgga aaatttcacc cagttagttt tttcagcaag aaaaccgatg aatatgaatc      2520
     aaaattacat agttttgaat tggagacact tgcagttgta catgcaataa agagatttca      2580
     tgtttattta tcaggtacaa aattcaaagt ttatacggat tgcaatgcgt tggctcaaac      2640
     tttggcgaaa aaagaaatta atcctaaaat tagtcgttgg gctttatttt tagaaaatta      2700
     taattataca ttagaatttc gcgatggaat aaaaatgcgt catgttgatg ctctgagcag      2760
     gttagctatg aatgaaggaa aaatattttc gaaaaacaat gaaggcgaac aagtgagttc      2820
     cgttgaagct gttagtgtgt taaatacaga agatatagaa agaaatgtaa ttcttgctca      2880
     agagcaagac gaaaagttaa aaaacatcaa aacacacctt gaatcacata catttccaaa      2940
     ctttgaattg aaaaatggaa ttctatttag aaatgataac aataagttat tgctagttat      3000
     tccgaaaatt atgatagaca atataataaa aatttgtcat gataatttag gacacattgg      3060
     gatagaaaag actattttag aaatcaaaaa attttactgg ttttcaaata tgaggaaaat      3120
     tgtaaaaaaa tacataagta actgtttaag ttgtatattt tacagtccag ctgatactaa      3180
     aaaggaaggc ttcctaaaga atattgataa aggtgaaaaa ccattcaaca ccatacatat      3240
     tgatcattat ggtccgatac agttacgatc atcgaaagga ttcaaattta ttttggtagt      3300
     agttgacgcc tttacaaaat ttgtcaaatt ctatccaact aaaaccacta atactgaaga      3360
     agttattaaa aacctatcaa tttacatgaa tcactatagt agaccaaaga gaatcatatc      3420
     agacagagga agttgtttta cctctgataa attcgaaaaa ttttgtgttg atcatttagt      3480
     tgagcacata aaaacagctg cttacactcc agaggccaat ggtcaagtag agagaatgaa      3540
     taggacactc acaccaatgt tagcaaaact aatacacgat actgataaaa gatgggatat      3600
     tttgttaccg aatgtagagt ttatttataa taacactttt aatagatcca taaaaaacta      3660
     tcctagtata ttattatttg gccaacttca aaatactttc aataaagttg agtttaattt      3720
     agagacactt gtcaaaaata accaggaaaa tattgaattt aggaatcttg tagatattag      3780
     gaaagaagca aaggaccaaa ttgaaaaact tcaagcatat aataaaacca aagtggataa      3840
     aaagcgaaag ggtgtacaag attataaaga aggagatttc gttgttataa aaacagttga      3900
     tactcataaa ttatctaata aatttaaagg tccttacgtt ataaaacaaa ttttaccaaa      3960
     tgatcgttat ttagttactg acatagatgg atttcaagtc tctagccttc catatagctc      4020
     agtttgctca ccgggaaata tgcgaaaatg gttatctttt cctcatatat ttactgatga      4080
     tgataacgat gaggacatcg ttgaatcagg atgaccgaat                            4120
//
ID   Gypsy-645_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-645_;
KW   Gypsy-645_AA-I; Gypsy-645_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2063-2063 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 163 BP; 63 A; 29 C; 23 G; 48 T; 0 other;
     tgtagtaaat taattaagta cattactaaa cttctcacaa catcacagta gttcacttaa        60
     catagtagtc atggacatat tagaagagtc agacgtagga accaaacatc attctgtaat       120
     aaaccattga actgataata cgtgttgtta ctaacgcact ata                         163
//
ID   Gypsy-646_AA-I repbase;    DNA;    INV; 7130 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-646_;
KW   Gypsy-646_AA-I; Gypsy-646_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7130
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7130
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2149-2149 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           563..1891
FT                 /product="Gypsy-646_AA-I_1p"
FT                 /translation="MTDHLERLVDDLRARLEEQRLQIAVLEEAQERRAEET
FT                 IIIQANQQNDIAQVPLQASMSNPPRIPDLIRMIPEFDGNPRKLPRWIESVE
FT                 QKLNESKKFVPQNEISQILPIWVGIIRDKITDKANDVLSAGHTPLDWNSIK
FT                 NTLTDYFGDKSDLSSLVSKLTNLRQGSSSVAEFHYVCRSLLAEINAKISLS
FT                 SNSANEAKAIMGTYETLMVNAFVDGLHDTVSDLTRSTRPQSLQAAYQVASE
FT                 QEAAMRRRRERNLKQTSDVLQIKRNALNMPTIQQRPFYAQRNFPMQSRAPN
FT                 PNTRPFVQSAFKSGPYYQQTRTTFQEQNYPQAKPVFQQQSYQQYRSQLPNS
FT                 NPPLAIKQEAFSNQTRNNNRPMQNVNMHEESEYTPESAEQPQYANQNFPHH
FT                 GMAHVSTSEPNVDFADAVLDTSHSADYSNEEDTADQLNFHMLEGLVPNE"
XX
SQ   Sequence 7130 BP; 2573 A; 1525 C; 1241 G; 1791 T; 0 other;
     ggcttaggtc ggtaggatca tctttggtcc cgttgtgtgt gcaaaagtga agtgattttg        60
     tccgtgaacc agaaaaaacg agtgcacatc gtaattggaa ggaacacatc tctaaaggaa       120
     tattagagac ctgcggcaat ttccagcagc tggagcacca gtgacggcga cgcaaagaga       180
     cctgctccca atcatcatct tctttcttca acaacccatc gagcgacggc ttatcgcgac       240
     gataactaca actataccgc attgctggag gatcaccaga aataacggta agtctaattc       300
     tatttttcta ttttttccgc ttctattctc atagcgtaag gtaacaatac aacaagcaat       360
     tagtgaagtg attaacgaaa atattacaag aataagtgaa aagcaattga gcaatacagt       420
     gaaagtgaaa atttagaaat tagatacacg aaaggcgcag tcgatttaaa cagaatatta       480
     aatttagtga agcgaataat tgatttacac gttaataatt gagttacacc ttaatagtct       540
     caccattgtg cggacaagaa aaatgactga ccacctagaa agattggtcg acgatctgag       600
     agctcgttta gaagaacaac gactacagat tgcggttctc gaagaggcac aagaaagaag       660
     agccgaagaa acaataataa tacaagcgaa tcaacagaat gatatcgctc aggttccgct       720
     acaagcttca atgagtaatc ccccaagaat acctgattta ataagaatga tccctgaatt       780
     tgacggaaat ccacggaaac tacctcgttg gatagaatcc gtcgaacaaa aattgaacga       840
     gtctaaaaaa ttcgttccgc aaaatgaaat ttcacaaatt ctgcctattt gggtaggcat       900
     aattcgcgac aaaattacag acaaagcaaa tgatgtcctt tctgcgggac atacccccct       960
     agattggaat tctattaaaa acactttaac cgactacttt ggcgataaat ctgacttatc      1020
     atcattggtg tcaaagctca ctaatctgag acaaggatcg agtagtgtgg ctgaatttca      1080
     ttatgtttgt agatctctgt tggcggagat caatgcaaaa atttcgctaa gcagtaattc      1140
     tgccaatgaa gccaaagcca ttatgggtac atacgagacc ctcatggtca acgcttttgt      1200
     ggacggactc cacgacacgg tgtcagatct aacaagatca acgagaccac agtctctcca      1260
     agccgcatat caagttgcct cagaacaaga agcagcaatg aggagaaggc gggagagaaa      1320
     tttaaaacaa acttctgatg ttttgcaaat aaaacgtaac gcgcttaata tgccaaccat      1380
     tcaacaaaga ccgttctacg cgcaaagaaa tttccctatg caatcacgtg caccaaaccc      1440
     aaacaccaga cccttcgtac aatctgcatt taaatctgga ccctattatc aacaaacaag      1500
     aacaactttt caagaacaaa attacccaca ggcaaaacca gtattccaac aacaaagcta      1560
     tcaacagtac aggtcacagc ttccaaattc gaatcccccg ttagcaataa aacaagaagc      1620
     tttttctaat cagactagaa acaataatag acccatgcaa aatgtcaata tgcatgaaga      1680
     aagtgaatac actcccgagt ctgcagaaca gcctcaatat gcaaaccaaa atttcccaca      1740
     ccacggaatg gctcacgttt ctacaagtga acccaatgtc gacttcgcag atgcagtttt      1800
     agatacatct cactcagcag actatagtaa tgaggaggat acggcggatc aactaaattt      1860
     tcatatgcta gagggcttag tcccgaacga atgaccaata actgtttacc atatttagaa      1920
     attcataaca caaaattcgg tacgctccgt ttcctaatcg acaccggagc aaacaaaaat      1980
     tatatttctc ctgctttggt accacctcag ataacaaaac tatgttccac aagaacagtt      2040
     aaaaatataa ctggaaaata tcaaatcaac caatatacac tcttcaaccc attctcaaat      2100
     tattgcaaaa caatccccgc gcaaaggttc tatttattta acttccataa cttctttcat      2160
     gggttaatag gatacgaaac attacggtct ttaaactcta tcatcgatac ggcaagagat      2220
     attttgaaaa tcggagagat atcgattcct ttgcaaaaga aatatcccga aacaatccaa      2280
     ataaatgcta atgaaacgaa atctttaaca ttaactacct ccgtagataa tggagatttc      2340
     tttattgatc gtgaaattga aattttaccc aaaataaaaa ttctttctgg tatctacaaa      2400
     agctcgaacc acagagcaga aatttgggtt cagaattatg atgaaactcc aagggacatc      2460
     agtatttttg atatgttgca agttgaaatc aataattttg aaacaagatc tctcgataga      2520
     gataatatta atttgggata ctcatgcgat aaaaaaccat cacccattga ttttaaacaa      2580
     gaaaatctaa ataaagagga aaaatccgaa cttttgaagg tattaaataa gttccgtgac      2640
     gtttttcgta cagacgatac tgtaccatta acgttcacca atgcgatacg gcatcaaata      2700
     aacactaagg acgacttacc tgtttataca aaatcgtatc gatacccctt tttccataaa      2760
     gcagaagtgc aaaatcaaat cgggaaaatg ctaaatcagg gcattattcg tccttcgaat      2820
     agcccatggt cttcaccgat atggatagtc ccgaagaaat tagattcttc aggccaaaag      2880
     aaatggaggc tagttatcga ttatcgaaag ttgaatgata aaactatcga tgatcgatat      2940
     cctatcccta atattactga cattttagac aagctaggaa gatgtcagta cttctcaact      3000
     atcgatttgg cttctggatt tcaccagatc gaagttgata agaaagatat ttcaaaaaca      3060
     gcttttagtg tcgaaggcgg acactatgag ttcgtgcgaa tgccattcgg tttaaagaac      3120
     gctcctgcta cgtttcaaag agtgatggat aatatcctca gggaacatat cggagttcga      3180
     tgcttggtat atatggatga tataatcatc ttttctacca gcctgcaaga gcatctcgta      3240
     aaccttacga aaatactcga aacgctccgc aaatacaatc taaaaaccca gattgataaa      3300
     tgcgagtttt tacaaaaaga agtggccttc ttagggcatg tggttactcc ggaaggcgta      3360
     aaacccaatc ccgagaagat cagagcgatc aaagaatggc cgttacctaa gaacgaaaag      3420
     gagttaagag cctttttagg ggtaatggga tactacagaa aatttataaa ggatcttgca      3480
     aaaatcacaa aacctatgac tcaacagctt aggaaaggag agaaaatcga acatactcga      3540
     gagttcgtct cctctttcga ccgctgtagg aacattttga ccagcagcca tgtgttgcaa      3600
     tatccagatt attcgaaacc gtttgtatta actacagacg catcgaattt cgccctaggt      3660
     gctgttttgt cgcaaggccc catcggtcaa gacaaaccta tcgcctttgc ttcacgtacc      3720
     ttgacaagga ctgaggagaa ctattcaaca attgaaaagg aactccttgc catcgattgg      3780
     gcgtgcaaat atttcagatc ttatttatat ggtcacaaat tcacattata cactgaccat      3840
     aaaccgttaa catacacact atcttctaaa acacaaaacg acagattaat aagaatgaaa      3900
     ttacgtttag aacagtttga ttatgagata aaataccggc ctggtaaaca gaacgtagtc      3960
     gccgatagcc tatctcgtgt caaacacgaa ataaatgtaa atgaacaaag gcaggaaact      4020
     tcatcgtcat cgtctgacga agaaaacgat cccgacgacg acagtgatgg agcaaccgta      4080
     cactccagtt catccgatgc tgaagactta ataaaaatga ccgaaaaacc cctaaatgtt      4140
     tttaaaaacc agattttaat tacagaaggg ccaaggaacg aggaatcata tgaagagatt      4200
     tttccttcga tatttcgacg gaccatcaac agggtaacgt ttggaatggt gaacgcaatg      4260
     gagatcttca gggattacat gcacccgacc agaacaaact gcattttatg tccagaaaaa      4320
     tggttaaaat ggatacaact agcgtatcga aaccattttt cccgtaacaa attttttaag      4380
     gttttattaa cgcagtctat tttacaggac gttatttctg aggaaggaca ggaccagatt      4440
     attgaagaaa ctcatcaccg agcccatcgt ggaatcgagg acaattgcag agtaatctac      4500
     aaaaaattct tcttcccaaa gatgcggaat aaggtaacaa gtttcattaa tctatgcaat      4560
     acttgccttg agaacaaata cgagaggaac ccttacaaag tcaaatttgc atacactcct      4620
     cttccggcta aacctctcga tatactccat gtggatatat tcatatccac cccaaatatt      4680
     ttcatatcgg cggtagataa gctatcaaga tacgctatac tcatccctat caaatcgcgt      4740
     tctattcccg atataaagaa agccattacg aaactcttta cgacttacgg caccccaaaa      4800
     atgattgtgt gcgacaacga ggttgcttta aaatcaattg aactgcgaag tctccttcag      4860
     agactggatg tggaaactta ttatactccc tctgatcaca gtgaggtgaa tggaatcgtc      4920
     gaacgatttc actcaactct cagtgagatc tttaggtgta tcaggagtaa gtacccagac      4980
     ctctcgaaca aagaaatcta taaaattgca accacgttgt acaacacaac agtcccattc      5040
     cagagactgg atgtggaaac ttattatact ccctctgatc acagtgaggt gaatggaatc      5100
     gtcgaacgat ttcactcaac tctcagtgag atctttaggt gtatcaggag taagtaccca      5160
     gacctctcga acaaagaaat ctataaaatt gcaaccacgt tgtacaacac aacagtccat      5220
     tctgctacga atttaaaacc tattgaagta ttttttggtg ttaaagatgg cgaggaaagg      5280
     cccctaaatc tccaaagaat actcgacaat agaaacgaag tattcgatga agttattcat      5340
     gctttagaag aacggcagaa aatacaaatc gatagacata acaagactag agaacaagaa      5400
     cctaactttt cgaaagacca tgttatttac gtcaaaagct ccggtattcc aaataaaaga      5460
     aaacaaaagt ttaagaaaca gattgttaga gcaaatagaa ggaaaaccgt tattgactcc      5520
     agaaagatta aacttcacaa aacaaattta aaaagaaata ggaaggtatt ttgataactc      5580
     ttaattttgt tttgaaaata ataataaata aacataacct attgcaaaca aactaacaca      5640
     ctaaccttaa ttttacagat gcttttcttg gcgttcatta tatacactgc attctcacag      5700
     atatcatgcg aatcattctt gaacatcata aaaataacag aagaaccaat cgttcagatt      5760
     aacaaaaaag attgtaaaat tcaattcggc tcaattaaaa tcatacaccc ggtgaaatta      5820
     gataggattg aggagagcat cgaaattata actaacactt tttacaacaa actaacaaat      5880
     actaacccat tgcatgaggt gattaagttc aggatcaaaa agctatacag cactctctat      5940
     ggactaaagc cacggcagac acatcgacaa cgacgatggg attccatcgg aacagcttgg      6000
     aaatgggtag ctggatcacc cgacgcccaa gatctccata tcctaaactc cactttaaac      6060
     gacctcatca accaaaacaa ccagcagtac aggattaacg acaatatcaa caataggatc      6120
     actcaactaa cagaatccgt caaccaaata gccagtacgt tgaatagtaa taacaaagca      6180
     aacctggatg ccttagatgc cgttacaaca atgctaaacg tcgacatcat caacgagata      6240
     ttagacaaca tccaagaagc tatcactctc tcgaagattt ctcttaccaa taccaaaatg      6300
     ctatccacac gcgagatcaa catcatcaaa gccgccatcc aagaccaagg tatacaaatc      6360
     aactttccag acgaagcgct acaattcgtc accccgaaag ttgctgtgaa aaacgacgac      6420
     ctgctataca tcttaaccgt tccacaactg gaaacttcaa cctccaccat cgtaaggatc      6480
     tacccactca tcatagacaa ccaaattatc aaatcacacc caagccatat catacggcat      6540
     ggtaccagat tattcacgac aagaaaaccg gaagattttg ttcaaaaatc agaatacatc      6600
     accgagttcg aagacgactg tattcaacca atcatactcg gaaaacagtc tcactgtaat      6660
     tcaataatca agaacgaaac cattcaactt ctagtaaacg agaacaccat attaatctcg      6720
     aatgccataa ccttgaaaac aaattgcgga ccagacgata ggaaaatcac cggaaacctc      6780
     atagtcaaat tctataactg taccatcaac ttcaacggtc aaacattcca aagttcagaa      6840
     accgtcatca ataccgagat actacacagt gcatttcaca ataccttgat gaaatggagt      6900
     cttcataaat cccacgacat agcagaaatc agcaatacag caattagtaa ccggcagaaa      6960
     ttggatcacg tataccttag gcaagatagt cttcacttca aattatggac aaccttcgga      7020
     ggattttcat tttcaaccat actcggaatt gccatccttt gcatagtcat caaattcatc      7080
     ttgaggaaaa caaccaacgg accgggacgt tccgtacttg aggagggggc                 7130
//
ID   Gypsy-646_AA-LTR repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-646_;
KW   Gypsy-646_AA-I; Gypsy-646_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-334
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-334
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2064-2064 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 334 BP; 110 A; 85 C; 73 G; 66 T; 0 other;
     agttacagca gaaaatcatc caccagctgg acttagtatc cagagcgacg gaaacagcca        60
     acaacaacaa gtgaggattc tacaacggca gcagtttgag ttggggaaca gagtgcaacg       120
     gctccaattc atcagcaata caaccggaca ccaccacgag gcagcgcaac gtggtctaac       180
     agagagtgct gagacagcaa ataacacgtt agggccctca ggtagttaga aacccaggac       240
     gcgtgtaata aatcagtctt tactcaatag tcaaccagtg cagttcagct tttctctttt       300
     taaaaacacc gatcccgaag tccagcttct aact                                   334
//
ID   Gypsy-647_AA-I repbase;    DNA;    INV; 5992 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-647_;
KW   Gypsy-647_AA-I; Gypsy-647_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5992
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5992
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2040-2040 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 5992 BP; 2253 A; 1176 C; 1021 G; 1542 T; 0 other;
     atggcggaag gaattaagtt tacatggcga accgtagaca gtctaagttc taatccaaat        60
     tgaacttagt gaacttagta aatttagtga aaaataatta ctagtgaaaa cgatgagagt       120
     cctactaatg caaagtgcaa ttacgctgct ggcgcttgga ctggtgatat attttactat       180
     cagctcttaa ttgaatggca aaccagcgcg agaaaagccc tgttggcttt ccaaacgtaa       240
     accgataatc gttcagtgta gtgcatcgga attattaact ggtgtaaaca aataaaaatg       300
     gggaaaactc aatccaagaa agcgcaaata tctggagacc cccaggttgc agtgttgaat       360
     caactggaga tacacgaaga gctccacacg caacatgact tcaagttgaa ccttatccta       420
     gtgctagtga ccattcaact gttaattacg ctgttcaggc tctataaaga acatacaaga       480
     agacaagccc tgaaagcagc aaaatcagtg gcggacttag caaaaatata acaaattctg       540
     aatgcaacgc gataaaaata atacgtaagc agcagctgac gggtgttgag gagaccgcct       600
     ccaccccaac atttagtgca aaaaaaaaaa aaaaatatat aatacaataa aatacaacaa       660
     ctgcaggaga gacccttgtc ggaggaccgg caagcgggat ttttagacaa cctggccaag       720
     gatcgagagg tatcaaagca gcaaaattca taataaccga agtaagtgga aattagagta       780
     agaatggtgc atttattcat gatacgtgtt aattcaatta tttttttttt aaatttaacc       840
     ttaatataaa aataatttcg gaaaaaaaat acaatattaa accatatcgt gcataatctc       900
     taaatgaagt caaaatacga aaaactaaaa caaatttata acgatttaaa gtcaaaagta       960
     gacctaagat cgtcaaatag aattttaaca aaacaagcca attcggcaaa aacattatat      1020
     aacaatataa ttaaattagc agaaattgac cctagtatcg aaaacaaaac catacttgaa      1080
     aaagcctcga atgttttcaa agttatccaa aaactagtcg aacataagcg actttctgaa      1140
     cgtgtatcat tcaaaggtgc tgtcacagct ataataataa ctaatagatt gaaacaaaaa      1200
     attaaaatga cgtccattct ggaaatctta aaaccgcttc catgctcgta cccgagtacg      1260
     atggaaacag cgaaaaccta aacagagtgg tgtctgccat tacagcacta aaaacattaa      1320
     ctgatgccaa taataaagcg gccgcgatcc aggtcgtact ctcaaagctg tccggtaaag      1380
     cgaggtcagc tgtgggcgat aacccaccag aattagacac catcattgat gggctaaaga      1440
     caagatgtgc ggtgacatgc caacctgagg taatcctcgc aaaattggcc aacgagcgac      1500
     aaacttctga attattaaag ttcacggagc aagtcgaaaa attaactgtg caattagaaa      1560
     gcgcctacat tgcagaaaac gtacccattg caaccgcatc gaggctagcc gttcgagcgg      1620
     gcacgaatgc acttgcaaac gggttacgta ataaagaatc gcagctgata ataaaggccg      1680
     gtaaatttga cacccttgcc gaagcgatag gcaaggcaaa cgaaaatgaa aaaaacacca      1740
     cgtcgaactc tgtcttattc tgcaacagca actcgcacag ccacgctaga ggtggtcaac      1800
     gtggacgaaa tgctcgaggt ctcacacctc gcggtggcta tgcaaatcct ggaagacaca      1860
     atacgaatca gggaaattat tatccatctc gcggtcgagg tggatatggt tatcgtaatg      1920
     ggttcggtaa cagaggtgga aataatttca gaggaagaaa tttccaccaa caaaaccgtg      1980
     ttttttatgc gcaagcggaa aacatgcatg tcccccaaca agtgaacgtt gggggcatgg      2040
     caagcatgat gggcaatccg ggacaattag cgcaacagcc gaaccaagct cctttacaaa      2100
     accaacaagt tgcactggcg aatatcgtga gacgttaaaa tgttttaaca tcaacacgtc      2160
     ttacgcaaat ttcataagta tccaactaac tgcctccgac agagtgtgca ctcttctagt      2220
     ggacactgga gcagatattt ccatattaaa gtcaaacata attaaccaaa gcgaactagt      2280
     aaacattgac gaaacgtgct caattacagg tattacccaa caaaaattac aaactatcgg      2340
     aacgatatca acagacatta tttgtcccga taacgttctc attactcata aatttcaatt      2400
     aatctcagaa gagttcccaa taccaactga cggaatttta ggaagggatt tccttactaa      2460
     attccactgc agtattaatt acgatacatg gatactcaca gcaatacatg aaaataccga      2520
     aattgaattc actattcagg atagtcttag tggaaatttt gttataccac ccagatgcga      2580
     agtcctgaga attattgact ctggcttact tcacggaaat ttctttttgg actcaacaga      2640
     aattcatcca ggtgtttttt gtgcgaaagc tattgtaaac accagaaatc acctcataaa      2700
     aattataaat acaaatccag aaataatcac aattagcaaa aatttccata gaacatacga      2760
     accgctggaa aattttgata tttttacttt tgacaaaatt aatacgcaac atagacaaga      2820
     acgtctcttg tcagaactaa aacttgatgg agtcccaaat gaagctaaac aaagcctaac      2880
     tagtttatgc gcgaagttta gtgacatttt tgcactccaa gatgataaat taacatgcaa      2940
     taatttttac caacaagaca ttttgttaaa tgatcaaacg ccagtatata ccaaaaatta      3000
     tcgactccca gaagttcacc gtaaagaaat agacgagcaa gtgaacaaat tattaaaaga      3060
     aaacattatt cgtccttcaa tatcacccta caactcacca atattgcttg tgcctaagaa      3120
     atcaaacgaa ggtacaaata aaaattggag acttgtagtt gatttcaggc gactgaacaa      3180
     aaatattatt gccgacaaat ttccgctccc cagaatcgac gatattctcg atcaactggg      3240
     aagagcaagg tatttcacaa cattagacct aatgtctggt tttcaccaga tagaattgaa      3300
     ggattcttca aaacattaca cagccttctc cacttcaaac ggtcactatg aatttaatag      3360
     gcttcccttt ggactaaata tttcgcctaa tagttttcaa cggatgatga ccatcgcgtt      3420
     gagtggtctt cctccggaat gtgctttcct ttatatagac gatattatta tcgttggatg      3480
     tactctaaaa catcatctct caaaccttga aaaagttttt ctaaaacttc gagaattcaa      3540
     tcttaagttg aacccatcga agtgtatgtt ttttcgtagt gatgttactt accttggaca      3600
     tcacatatct agtgagggaa ttcaacccga taaagcgaaa ttttcagcaa tccttaatta      3660
     ccccgaaccg aaaaatgcag atgatgtaag acgatttact gctttctgta attattacag      3720
     aaggtttatt ccatattttt ccgaaataac tgctcccttg aacaaacttt tacgaaaaga      3780
     tgtaaaattt gagtggaatg aaaactgcaa aaaggcattt gactatttaa aacaaaagct      3840
     tttgtcacct acaattttga aatttccaaa ttacaacgaa aaatttattc ttagcacaga      3900
     tgcctccaaa attgcatgtg gtgctgtttt agctcaactt catggtgaca tagaattacc      3960
     agtagcttat gctagcaaaa cttttacaaa aggtgagagt aacaaatcca ccattgaaca      4020
     agagttgact gcaattcatt gggcaatcaa ctatttccga ccatacttgt atggcagacg      4080
     ttttacggtg aaaacagatc accgcccact tgtttaccta ttttcgatga aaaatccgaa      4140
     ttcaaaactg accagaatga gagtagattt agaggagttt acctttgatg tcgaacatat      4200
     cagcggaaaa cagaacgttg gcgccgacgc tctatcccgc gtaatgattg actctgaaga      4260
     actcaaaaat ctctccgtac tgccaattca aactaggtcc atgactagac agaaaaacaa      4320
     ccaaaatgat aatgacacac aaactaattc atctgctact gagattgatc acctcaaagc      4380
     ttatgaatca gtaaacaacc ttgacgcatt taacatgccg aaagtaatat ttgaagtaaa      4440
     cgacaatagt ctaaatttac gaattttgac taaaaccctg aaaaggatcc ttgcacgcga      4500
     gcaattatcc tacaaaagtg gaaatgttaa tttacaagaa tgtctgcaga cacttgataa      4560
     aatggccgcc aaaatgaatt tgaaaacgct agcaatgaaa aacgatgata aaatttttac      4620
     aatgattcct cgccaaatat ttaaaaaagc atgcaacgaa gtacttaaaa atttgacaat      4680
     tatcatctac cacccagctc aaatcgtaaa tgatgaggaa attatacaca aaataatctc      4740
     tgaaaaccat gacacaccta cgggaggtca cattggtaca accagattat tcaaccgatt      4800
     acgatctaaa tattattggc acaacatgaa acacaccata gcaaactttg tcaaacgatg      4860
     tgtgaaatgt agccaaaata aacataaaac aaaaacaaac gaatcgtttg tagaaacaac      4920
     gacaccaacc aaatgtttcg atctcatatc agttgatacg attggacctt ttactaaatc      4980
     taggaatgga aatagatacg cattaacaat tcagtgtgat ctatccaaat acataattgc      5040
     agccccacta ccagataaac aagcaaacac gttagcaaaa gctctagtag aaaattgcat      5100
     tcttaaatac ggttgtccga atacaatcaa atcagatttg ggtaccgagt ataagaacga      5160
     gattttcgaa aacgtatgca aactgttagc aatacaacaa aaattctcta cagcttatca      5220
     ccccgagaca ataggtagcc tcgaaaggaa ccatcgttgt ctcaacgagt accttagaag      5280
     cttcattaat gaaaaccaag atgattggga ttcatggctt aactattata ctttctgcta      5340
     caatactaca ccacacacag accattcata tagccctttc gaactagttt tcggaaaaca      5400
     agcaaacata ccgagcgagt tttctaatgc aacaataata gatccagtgt ataatcacga      5460
     atcttaccta ttcgaactta aatacaaaat gcaacaggct tcaatcaaag caaaaacatt      5520
     gttagaaaaa tcaaaatcaa taagaaatca aagccacaaa ccaaaagaaa atccaatagt      5580
     agtagcgata ggagatcaag tttggttaaa aaaggagaat aggagaaaac tggacccagt      5640
     ctattctggt ccattcgaaa ttgtacaaat tatacatcca aacgttaaaa ttaggaatat      5700
     aatcaaccaa gatgaacaaa tagttcataa aaatcgaata attcaaaata aaatataatt      5760
     catacttaac tataaattta catttttcag ctcaaacaca atattatatt aaaaatttag      5820
     gaatgattat accatgtaaa accattcttc tcgaaagggg aggatgagct agaaactaag      5880
     aaaaacaaaa tttaaaatac aaaccataaa tccgtaattc aagaattttg tgaaaggtat      5940
     ttgaagtcag aagaaaaatg atcttcaatc attttttccc aaacggtggt gg              5992
//
ID   Gypsy-647_AA-LTR repbase;    DNA;    INV; 383 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-647_;
KW   Gypsy-647_AA-I; Gypsy-647_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-383
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-383
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2065-2065 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 383 BP; 94 A; 97 C; 74 G; 117 T; 1 other;
     tgtaacatgt gtatcgcaca tgttagcaaa ccctcttcat ttccagcaga tcgcaaccct        60
     tgcgtcatgc tgagacccaa taagtcagca acccattgag ccgatggccg ttgcatttgc       120
     ataagcactt tctcatgaaa gtgtcgtttt accgggtcaa taatttatga ctgtacccga       180
     ctgtttccaa gctacacgtc gcgcggcagt gccgactgtg tggtctctct tttgctctct       240
     ctctcaatca gtgcattgat cactgattgg tccgtcttta cataatgact tcaggtacct       300
     tcagtacata cagcttaggt taagtcaaga cctacaataa agawttattc tggttctaac       360
     gaccgaacag tgcagtcttt tta                                               383
//
ID   Gypsy-648_AA-I repbase;    DNA;    INV; 6594 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-648_;
KW   Gypsy-648_AA-I; Gypsy-648_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6594
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6594
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2150-2150 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1159..2715
FT                 /product="Gypsy-648_AA-I_1p"
FT                 /translation="MSRLSFIEDYISKEFTNLRKSVNKAKTLETITSKEET
FT                 LGNLFSEYVSLLKSSKKEFEQKGTWKAHYETYEITKTKFEGCRQLLSKAII
FT                 SSRTPKYKLKTIAKTIIFVNRLAPPKVCPPKIQFKTVARLSILLKRFSPST
FT                 SQIPRPPKIKFKSLAKLIVLLRRYNFPTVFADAQIIRFKTLAKLIIWLNRF
FT                 NKMTDFDIKTAPALVQPYNGDADGLEAFVDSANLLNELVKADHKPLAAKFL
FT                 RTRLTGKARLGLPETANTIELIIDNVRDRCQEKITPDSIIAKMRNVKQKQS
FT                 VQTLCDELENLTAKLKSVYLGNKIPDDVASSMANKAGVDALINGVTNSDTK
FT                 LILKAGTFNNIRDAITKVVENSNSPSPPNAEIFTLSSRGRNNFSNNFGRND
FT                 YQRDFHGNARNFQSNHQRPNYNRGYGQNSRRQYFNRGYNNNNHNRNYDSQN
FT                 ENRSRNYDNRYRNRNNNADNRRYDNNNRNDNNSSRTSEGQNRSRNVYYAEN
FT                 EQTSSARPQPETNAPTGVAQPRA"
FT   CDS           2772..6341
FT                 /product="Gypsy-648_AA-I_2p"
FT                 /translation="MCDKSCTLIVDTGADVSLIKENILQPTTNIYTNHKCM
FT                 INGVTSGQIETIGISHTNILMNGVKIPLNFQVVDKEFPIATDGILGRDFLA
FT                 HYGTKICLKTWLLTFDYQNKTFEIPIEDKFDSKIIIPPRCQIIKEVDIEGV
FT                 TEDCVIIGDQMDPGVFYSNTIVSPTSKYVQIVNSKEQPVTVHVTAFKPKLI
FT                 PLRKFEFKTQPRKVNRKKERLQKLSDEISLEIYPEAKEKLKELCFKYNDIF
FT                 ALQGDTLTANNFYKQKITLQDGNSVYIKNYRTPEAHLEEIDKQVNKMLADK
FT                 IIQPSISSFNSPILLVPKKSETDEKKWRLVVDFRQLNKRIIPDKFPLPRID
FT                 EILDHLGRAKYFTTLDLMSGFHQIELDENSKKATAFSTTTGHYEFNRLPFG
FT                 LNISPNSFQRMMTIALSGXPPECAFLYIDDIIVVGCSVNHHLANLEKVFEK
FT                 LRFYNLKLNPSKCNFFKNEVTYLGHHISDKGIQPDKSKFEVIKNYPVPTNS
FT                 DEVRRFVAFCNYYRRFIQNFANIAYPLNKLLRKNVTFSWTTECQAAFDTLK
FT                 STLISPTILQFPDFKKQFILTTDASKTACGAVLAQQHGNIELPIAFASKAF
FT                 TKGESNKSTIEQELIAIHWAIMHFRPYLYGRKFLVKTDHRPLVYLFSIKNP
FT                 SSRLTRMRVDLEEFVFDVEYVQGKLNVGADALSRISIDSETLKNIQTLIVQ
FT                 TRASSKKLKEKDREPTQNSNDMPEPDQLNAYEALNLSEVFDLPKLVIELAR
FT                 GDFKVRNVEIRIFNKTKKCQLATSKGKLIPENTNIMDILNEIERMATKMNI
FT                 NALALALNSDIFQLVTPHIFKEKCAQELNSLQIIIYQPKRLVESKNEQLEI
FT                 IKINHDTPLGGHVGVNRLYKKLNNLYNWPNMRKTITDYVKQCVKCKENKHG
FT                 VKTNENFXSFPTTFKTFDSIAMDTIGPFNKSNTGNRYALTIQCDLSKYVVI
FT                 KPIIDKSANSIAKAFVESFILIYGAPSVIRTDQGTEYKNEVFEKXSEYLHI
FT                 NQQFSTPYHPQTIGGLERNHRCLNEYIRQFVNESQTDWDEWLPYYAFCYNT
FT                 TPNTDVRYTPFELIFGKPPNLPQDIRNPSKVDPVYNTDLYYQELKHRLQKA
FT                 TITARQIITKIKDKRIIDQSVKANPINVMIGDKVMLTNENRRKLDKVYKGP
FT                 YYITKVEHPNVTLSDNNGYTTVVHKNRIIKI"
XX
SQ   Sequence 6594 BP; 2428 A; 1293 C; 1174 G; 1695 T; 4 other;
     tggcgaaccg cgactaagtg gccaatgacc tgccttctcc agaaaaaata agttcagcgc        60
     cacgaaacaa agtgttgcta aagtgttcgt acagagtcgt gcagtaataa gtgctaaaat       120
     gggttggttc acatcagata actacatcac gaaccaagtg gaaatgaaca ccacggaaat       180
     gagaatccta gtaggcgcgt gtgtgataat tgtattcgtg attattgcgt atctactgct       240
     gcgtttgcat agcaagtaca tgaaaaaggg gatcaaaaac gtggttcaac acgagatcca       300
     actgaacaat gtaagaagtt tgtgatcact aagaacaaca taactatcgc gtgtgttgct       360
     atatgaacat aatgaatcgt gaaaattgta cacatgtttt actcagtgtg tgatatgtgg       420
     ggctgtttac ctataatcgt aagcacaaca actaccacga ccccgtcaac tacaatcgaa       480
     gaaacgcaga gtaacgtttt gagcacggac gttaatcgtg taaataagct agtggaaaat       540
     agtgaaactg tcgaaaatca tctgatattc gtgatagcaa cattgacatt aataattgtg       600
     tcaacagtga taattagcgc tgtttggtac agacgcagac aaaagaagaa aagaagtgaa       660
     aaaaccaaat tgattaaaat agtcgttttg atggcacaac agtccgttct aacggacacg       720
     tcaacagtca ggggcgaacg gtcagcggtc aatgaccacc ctgagaacgc atcacaattc       780
     cagggcgaac agtcacaaga caccctgaag actcatcaat taccaggggc gaacggttgc       840
     cagacaccct aagaacgcat cacaagtcca gggcgagcag tcaccagaca ccctgacgaa       900
     acagcacaca cccaggggcg aacggttacc agacaccctg atgaaaattt caagcctcag       960
     gataagtacc catcaacaaa gatgataata aataaataga aaatgtagat ttatagtttt      1020
     tccatggtca agtggtttcg gtaaattatt tgaaacattc tgagtaggta gatcgcttaa      1080
     caggcgatgt gttcaattct tggtcgaatg aaagaaatgt gttgtatgct tgggcaaaac      1140
     gtgtgatttt tcttctaaat gagcagatta agttttatcg aggattatat ctccaaagag      1200
     tttacaaacc tccggaaaag cgtcaacaag gccaaaaccc ttgagacgat aacctcgaag      1260
     gaagaaactt taggaaattt attcagcgag tatgtcagtc ttttgaagtc aagcaagaaa      1320
     gaatttgaac aaaaaggcac ttggaaagcg cattacgaaa cttatgaaat aacgaagacg      1380
     aaatttgaag gatgcagaca acttttatct aaagcaatta tcagttctag aacaccaaaa      1440
     tataagttaa aaactattgc aaaaactatc atattcgtta atcgtttagc gcctccaaaa      1500
     gtctgcccac caaaaattca atttaaaaca gtcgcgagac taagcatact cctgaagcgt      1560
     ttttcaccct caacctctca aattcctcgt cctccaaaaa ttaaattcaa atcgttagca      1620
     aaacttatcg tattattacg acggtataac tttccgacag tgttcgcaga cgctcaaatt      1680
     atcagattca aaacacttgc gaagctaatc atctggttaa accgattcaa caaaatgact      1740
     gattttgaca ttaaaacggc tcctgcatta gtccagccat acaatggaga tgcagatggc      1800
     ctagaagcat tcgtcgattc agcaaatctt ctaaacgaat tagtcaaagc tgatcacaaa      1860
     cctttggcag caaaattttt acgaacaaga ctaacgggta aggcaaggct tggcttaccc      1920
     gaaacggcca atacaattga actgattatt gacaacgtgc gagaccgttg ccaagaaaag      1980
     atcactccgg acagcattat cgcgaaaatg aggaacgtca aacaaaaaca gtccgttcaa      2040
     acactatgtg atgaactgga aaaccttacg gcaaaattaa aatccgtgta tttaggtaat      2100
     aaaataccgg atgatgtggc gtcaagtatg gccaataaag ccggagtaga tgccctcata      2160
     aacggtgtca ctaatagtga tacaaagtta attttaaaag ccggaacttt caacaacatt      2220
     agggatgcca ttacaaaagt tgtggagaac tcaaattctc ctagcccgcc aaatgcagaa      2280
     attttcacac tttccagcag aggtaggaat aatttcagca acaatttcgg tagaaatgac      2340
     taccaacgag attttcacgg aaatgcaaga aactttcaga gtaatcatca aaggccaaac      2400
     tacaaccgag gatatggtca aaattctaga agacagtatt ttaatcgagg ttacaacaac      2460
     aacaatcata accgtaacta cgattcccag aacgagaacc gtagccgcaa ctatgataat      2520
     cgctatcgta atcgcaataa taatgctgat aatagacgtt acgataataa caaccgtaac      2580
     gacaataata gcagtcgaac tagtgaaggc caaaacagaa gtcgaaatgt gtattacgcg      2640
     gaaaacgagc aaacgtcatc ggcccgtccc cagccggaga cgaacgcacc caccggggtt      2700
     gctcaaccaa gagcgtaaaa gttttcaatt tagacataaa ttacactaat tttgttactc      2760
     tgaaactaga gatgtgtgac aagtcatgca ctctaatagt cgatacggga gcggatgttt      2820
     cgttaatcaa agaaaacatc ctacaaccca caaccaatat atacacaaat cataaatgta      2880
     tgattaacgg agtaactagt ggacaaattg aaaccatcgg tatttcacac acaaatatcc      2940
     taatgaacgg cgttaaaatc ccactcaatt ttcaagttgt cgataaagaa ttccctattg      3000
     caacagatgg aattcttggt cgagacttcc tggcacacta tggtaccaag atttgtttga      3060
     agacatggct tttgactttc gattaccaaa ataaaacctt tgaaattccg atcgaggata      3120
     aattcgatag caaaatcatt atcccaccca ggtgtcaaat aattaaggaa gtagatattg      3180
     aaggagtcac cgaagattgt gtcattattg gtgatcaaat ggaccctgga gttttctatt      3240
     ctaatactat cgtaagccca acatcgaaat atgttcaaat tgtcaattcg aaagaacaac      3300
     ctgttacagt tcacgttact gccttcaaac caaaattgat accactacga aaattcgagt      3360
     tcaaaacgca accacgtaag gttaatcgta aaaaggaaag gttgcagaaa ttatccgatg      3420
     aaataagttt agagatttac ccagaagcaa aggaaaagtt gaaggaactt tgtttcaaat      3480
     ataacgacat tttcgcttta caaggcgata ctttaacagc aaacaatttt tataaacaaa      3540
     aaatcaccct tcaggacgga aattctgtgt acatcaaaaa ttatcggacc ccagaagccc      3600
     atcttgaaga gatcgataaa caggttaaca aaatgttagc cgacaaaata atccaaccgt      3660
     cgataagctc ttttaattcg ccaattttac tagtccctaa gaaatcagaa acggatgaga      3720
     aaaaatggcg tttagtggtg gattttcgtc aattgaacaa acgaataatc ccagacaaat      3780
     tcccactgcc acgcatagat gaaattttag atcatctggg cagggcaaag tatttcacaa      3840
     ctttggactt aatgtccgga tttcatcaaa ttgaacttga tgaaaactct aaaaaggcaa      3900
     cagctttttc aacaactact gggcattatg aatttaatcg attgcctttt ggtctaaaca      3960
     tttctccaaa cagcttccag aggatgatga cgattgcatt aagtggawta ccaccggaat      4020
     gcgcattttt atacatcgat gacattattg tcgtcggatg ttcagttaat catcacctag      4080
     cgaatctcga aaaagttttt gaaaaattaa gattttataa cttaaaattg aacccgtcga      4140
     agtgtaactt tttcaaaaac gaggttacct atttaggtca ccacatttct gacaaaggca      4200
     tacaacctga taagtccaaa tttgaagtta taaaaaatta tcctgtacct acgaattctg      4260
     acgaagtacg tcgtttcgta gccttttgca attactatag aagattcatt caaaatttcg      4320
     ctaatattgc ctacccgctc aacaaattat tgaggaaaaa cgttactttt agctggacaa      4380
     cagaatgtca ggcagcattc gatactctta agagcacact aatttcacca acaattttgc      4440
     agttccctga tttcaaaaag cagtttatct taacaaccga cgcgtctaaa acagcttgcg      4500
     gagcagtgct tgctcagcaa cacggcaata ttgaacttcc tattgcattc gccagtaaag      4560
     cattcacgaa aggcgaatcc aataaatcga ctattgaaca agagctaatt gctattcatt      4620
     gggcaattat gcactttaga ccatacctct atggccgaaa atttttagtc aaaacggacc      4680
     acagaccttt agtgtaccta ttctcaatca aaaatccttc atctagactg acaaggatga      4740
     gagtagatct tgaagaattt gtttttgacg ttgaatacgt ccaaggaaaa cttaatgtag      4800
     gagccgacgc tttgtctaga ataagcatcg actccgaaac tctgaaaaac atacaaacgc      4860
     tcattgtcca aacgcgagct agctcaaaga aacttaaaga aaaagatcga gaaccaacac      4920
     agaatagcaa cgatatgcct gagcctgatc aactcaatgc gtatgaggcg ttgaacttaa      4980
     gtgaagtttt tgatttacca aaactcgtca tagaattagc acgaggagac tttaaagtca      5040
     gaaatgtaga gatacgaata ttcaacaaaa caaaaaaatg tcagctagcg acatcaaaag      5100
     gtaagctcat acctgagaac acaaacatta tggatatcct gaatgaaatt gaaagaatgg      5160
     ccacaaaaat gaatatcaat gctttagctc tagcgctaaa cagcgatatt tttcagcttg      5220
     ttactccaca tatttttaag gagaaatgtg cacaagaact gaattctctg caaataatta      5280
     tttatcagcc taaaaggctt gttgaaagta aaaatgagca attagaaatc atcaaaatca      5340
     accatgacac ccctttagga ggacatgttg gcgtcaacag attatataag aagcttaata      5400
     acctatacaa ctggcccaac atgagaaaaa ctattaccga ttatgtcaaa caatgcgtaa      5460
     agtgtaaaga aaacaaacac ggtgtaaaaa cgaacgaaaa ctttamatcg ttcccaacaa      5520
     catttaaaac ttttgactcc attgctatgg acaccattgg accgtttaac aaatcaaata      5580
     caggcaacag atatgcattg actattcaat gtgatctgtc aaagtacgtt gtcattaaac      5640
     caattattga taaatccgca aactcaatag cgaaagcatt tgtagaaagt tttattttaa      5700
     tttacggagc tccatctgtc atcagaacgg atcagggcac cgaatacaaa aatgaagttt      5760
     ttgaaaaaaw ttcagaatat ttacacataa atcaacaatt cagtacgcct tatcacccac      5820
     aaacaattgg aggtttggaa cgtaaccatc gttgtttgaa cgagtacatc agacagtttg      5880
     tgaacgaatc ccaaactgat tgggatgaat ggttacctta ttatgcattt tgctataaca      5940
     ccactccaaa cacagatgtt cggtacacac cttttgaatt aattttcgga aaacctccca      6000
     acctccctca agatatccga aatccatcca aagttgatcc agtatacaat acagatttat      6060
     attatcaaga attgaaacat cgtctccaaa aagcaacaat aacagctaga caaatcataa      6120
     ccaaaatcaa agataagcga attattgatc agagtgtaaa agcaaatcca attaacgtaa      6180
     tgataggaga taaggtaatg ttaacaaacg aaaatagacg taaattagat aaagtatata      6240
     aaggaccata ttacatcaca aaagttgaac atccgaatgt aactttatcg gataataacg      6300
     gatatactac agttgtgcat aaaaatcgta taattaaaat ttaatcactt cttactcttc      6360
     ctcttcttca gggggaaggg gacaatcaca tttwataaat aatcttatat caattattct      6420
     aaaaaaaaaa ataaaactgg aaaataatat tgtaatacat cactgattta atcacaaagg      6480
     aaatattcca taacatataa catataaaaa tataatataa taaaataagc taccacagac      6540
     agagtctacg caatatttga gaatagcttc gctattcttt caaaagggga tagg            6594
//
ID   Gypsy-648_AA-LTR repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-648_;
KW   Gypsy-648_AA-I; Gypsy-648_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-507
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-507
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2066-2066 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 507 BP; 145 A; 94 C; 99 G; 169 T; 0 other;
     tgtagcattc ctgctacgca ttagacatag gatttttcca aatcgattcc aaatctaaat        60
     ccaaattagc acaatctgct taccagatgt gtacgctcat tatcacggtc ataaaacagt       120
     aacgttggtt attttgaatt tgatgcgctt gcgaccttta cctgcagacg ctgtattatt       180
     attgtttatt actcacgtag agagaccgtt aagcatgtct catggttatg ccgaattgca       240
     acctttgcaa gggcgtcacc cgagctatgt ttatgatgcc tcactcgggt tattccaaat       300
     attgtctata aactgtctgt gtgaggtaac gtaaacttag gtaaattcta gtggtagaaa       360
     acttagatat aagctaacga gaaatacatt attcactttt ttttctgaat ccagatacag       420
     tcgtgagtag tcttcattct tgatgacagt cgtgatatac cgtggcgaag ttctaatgaa       480
     acagatgtga ttagcagtga tgttatt                                           507
//
ID   Gypsy-649_AA-I repbase;    DNA;    INV; 6000 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-649_;
KW   Gypsy-649_AA-I; Gypsy-649_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6000
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6000
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2151-2151 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1020..2228
FT                 /product="Gypsy-649_AA-I_1p"
FT                 /translation="MLEIIENEVQTLIKILSNLKKSRFNKIRTQTLQAKSI
FT                 YAEKLTQDIEEKLILHEAEIVDSSLKFLSKCTRETNYEIQQIIKLKIIENG
FT                 IMPDPPAQNVAMFDIKTATGLIQKYDGSATELDAFIDSVNLLKEITADAHT
FT                 ATAIKFIKTRISGKARSALPANPQTFEEITDSIKQVCQNTETPDSIIAKLK
FT                 ATQNKGDKQKFCDEVETLSQKLSTLYINNNIPVDVAKKMATKAGVDALING
FT                 VSNSELKIILKASEFNTVQKAIQKINETKTEPTSQIFSMHSNNQRGRGRQN
FT                 YNKFQNTNSNRYRSNNDYNRRGNFSNNDYRRGNNRGNSNFRGNPRGNYHNN
FT                 RRNNFNSRTGHSVFYTQAENGPVPQHIVVGGNQANPASAHAQQLPQGQQNG
FT                 HQCATINRR"
FT   CDS           2207..5830
FT                 /product="Gypsy-649_AA-I_2p"
FT                 /translation="MRDNKQKINKTCYNINTNCSNFIFIHSEFSSSKCTLL
FT                 VDSGAELSIFKTNKINSTPVINYDAKCTITGINNLPLETVGSTLTKIYLPN
FT                 NVTIDHTFHLVDSSFPIPTDGILGRDFLSKFRCIVNYDTWLLSGTINSKEF
FT                 QIPIEDNLNGEFVLPPRCEVLKQIHTEELFEDHVLISNEISPGVFCANSLI
FT                 NNDNKLVKFINTSDNIVKINKNFQKQLIPLENYNIYSYDELKDENRSTKLL
FT                 SELKTDHIPCNYKQKLIELCTKYNDVFALKGDTLTCNNFYRQCINLNDNSP
FT                 VYIKNYRIPEVHRNEVNTQVEKMLNDGIIRSSFSSYNSPILLVPKKSTNDE
FT                 KKWRLVVDYRQLNKKIIADKFPLPRIDDILDQLGRARYFSTLDLMSGFHQI
FT                 EIEENSKNYTAFSTTTGHYEFNRLPFGLNISPNSFQRMMSIALSGLPPECA
FT                 FLYIDDIIVIGCSIDHHMKNLEQVFKKLQHFNLKLNPEKCNFFCADVTYLG
FT                 HHISRHGILPDKSKHATIINYPTPQNCDDVRRFVAFCNYYRRFIPYFSEIA
FT                 SPLNALLKKNAKFIWNEDCKNAFEELKNKLISPQILKFPDFTKQFILSTDA
FT                 SKNACGAVLSQPYGDIDLPIAYASRTFTKGERNKSTIEQELTAIHWAITYF
FT                 RPYLYGRRFTVRTDHRPLVFLFSMKDPSSKLTRMRTDLEEFHFNIEYVKGK
FT                 ENVGPDALSRIIIESEELSNITALPVQTRSMTRQKPNPQNNEPAIETDHLR
FT                 AYDSINNIDAFGLPKLVFSISKNDLYIKVMTKNVKKDLALAHFPYALKNFD
FT                 LKTYIVTTNEMAKNLRMRKLAIANNNIIFSLIERQMFKTICNEILRDVDII
FT                 LYKPAQIITCENEINKIIAENHDTPTGGHVGTSRLLKKLRSSFYWNNMKAT
FT                 INNYVKKCTKCIQNKHTLKTKETFIETTTPTNPFDIVSIDTIGPFTKSISG
FT                 NRYALTAQCELTKFIIVVPIIDKQAQTLAKAFVENIILVHGCPLIIKSDMG
FT                 TEYKNEIFQNMCEYLHIEHKFATAYHPETMGSLERNHRCLNEYLRQFISEQ
FT                 HDDWDTWLKYYVFNYNTTPHTTHQYTPYELIHGRKANMPQSIQNFTKLDPI
FT                 YNYDSYFTELKFRIQSTIKKTRELLQKSKLNSINKQVSESNPIDVQIGETI
FT                 WLKKENRRKLDAVYTGPFTVVEVNHPNVTIESTITKENQIVHKNRIRKI"
XX
SQ   Sequence 6000 BP; 2350 A; 1115 C; 998 G; 1537 T; 0 other;
     tggctgaccg ttgacagctc atggcgcgag aagttaaaac cgcgatattt taaatctaca        60
     taaccgtcat acgaaaagtg ttagtgcatt acaatgggga aatcaaattc aaaaaactca       120
     ataaccagtg aaaatcccca agtgcaagta ctaaaccagc tagagtggca cgaagagttg       180
     cacaaagaac atgattttaa aatcacaatt atattggtgc tagtagcaat acagttgtgc       240
     atcacaattt tcagactgta caaagaccac acgaaggtcc aagcgctgaa agcagccaaa       300
     tctgtagctc acatagacac agtttagtga agaaaaacat aacatgttac agtgtgacta       360
     tctcgttatt gaccttcgcg tttacgtgcg gccatgggag caaaacaatt agtggatact       420
     ttgaaaaggc tacaagtagc ccacgcagtg aacgtcccag tgtatgtgga cactacaata       480
     aaaagcattc ttaatttatt gaatatgcta gaaactgaaa agtgcgcgac gataacaaag       540
     aaacataaaa cataccgcct agtggaagtg acgtacgaag taacaaaaat agaagttttc       600
     ccacagttta tccactcaaa agcacacaag ttaaacaaat acgctaaaga attcctgaac       660
     ggtaaaaatg gacaattaat agtttcaact agccaaggct ttatgtcgca tgaaaaagca       720
     atgaagaaga aaattggtgg acaaattata gcatatatct ggagaaaata gtgattagtg       780
     actgatgcgc gagtttgtcg atcatcatca gcagcttgtc gtacaacagt agctgaaatt       840
     atgcagtaac gctgaagggt gtgaggagag cgcctccacc aaatagcgaa atgtatcatc       900
     ttggcgtcca taaggtcatc cagaaggaaa acagcattaa caggtgaaac ccggaaggtg       960
     ttgaggagag cgcctccgcc taactgtaag ctatatttta atttaaaatt attttattca      1020
     tgttagaaat aattgaaaac gaggtccaaa cattaataaa aattttgagt aatttgaaga      1080
     aatctagatt taataaaata aggacccaga cattacaggc aaagtcaatt tatgctgaaa      1140
     aattaactca agatatcgaa gaaaagctta ttttgcatga ggcagaaata gtggattcta      1200
     gtttaaagtt tttatcaaaa tgcactaggg aaacgaatta cgaaatacaa caaattatca      1260
     aacttaaaat aatagaaaac ggaatcatgc cagacccacc agcccaaaac gtcgcaatgt      1320
     tcgatataaa aacagcgact ggattgatcc aaaaatatga tggctcagcg acagagctag      1380
     atgcgtttat cgactcggta aatttactga aggaaataac agccgatgcg catactgcta      1440
     cggcaataaa atttattaaa acaagaatta gtggtaaggc acgatctgct ctgccagcca      1500
     acccacaaac gtttgaagaa attacagatt ctatcaaaca agtttgtcaa aataccgaaa      1560
     caccagattc aataatagcc aagttaaaag ctacccaaaa taaaggggat aagcaaaaat      1620
     tttgtgacga ggtggaaaca ctctcgcaaa aattatcgac gttgtacatc aataacaaca      1680
     taccagttga cgtagctaaa aaaatggcga cgaaagcagg agtagacgca ctaataaacg      1740
     gtgtatcaaa ctccgaattg aaaattattc tgaaagctag cgaattcaac acggtacaaa      1800
     aagcaataca gaaaatcaat gaaacaaaaa ctgagccaac atcccaaatt ttttctatgc      1860
     attctaacaa tcaacgagga cgaggacgtc aaaactacaa taaattccaa aacacaaatt      1920
     caaatcgata ccgttcaaat aacgattaca accggagggg aaatttctcc aataacgact      1980
     acagaagagg caataatagg ggaaattcaa atttccgagg caatcctcgc ggcaactatc      2040
     acaataatag gagaaataat ttcaattcta ggactggaca ttccgtattt tacacccaag      2100
     cggaaaacgg tccagtcccc cagcacatag tagttggggg aaatcaagca aatccagcga      2160
     gtgcacatgc tcagcaacta ccgcaagggc aacaaaacgg acaccaatgc gcgacaataa      2220
     acagaagata aacaaaactt gctataatat caatactaat tgctctaatt tcatttttat      2280
     acactccgaa ttctcaagtt ccaagtgtac tttattggta gactctggag ctgagttatc      2340
     gattttcaaa acaaataaaa taaatagtac accagtaata aattatgatg caaagtgtac      2400
     gataacggga ataaacaacc tacctttgga aactgtaggg tcaactttaa ccaaaatata      2460
     tcttccaaac aatgtaacaa tcgatcatac atttcatcta gtcgattctt cttttcccat      2520
     accaactgat ggtatattgg ggcgagattt cttgtcaaaa tttcgctgta tagtaaatta      2580
     tgacacatgg ttattatctg gaacaattaa ctctaaagaa tttcaaatcc caattgaaga      2640
     caatttaaat ggcgaattcg ttttaccacc acgttgtgag gtgttgaaac aaattcacac      2700
     tgaagaactt tttgaagatc acgtacttat ttctaacgaa attagtccgg gggtattctg      2760
     tgcaaattcc ttaataaata atgataacaa attggtaaaa ttcataaaca cttctgacaa      2820
     tattgtaaaa attaacaaaa actttcaaaa acaattgata cctttggaaa attataatat      2880
     atactcatac gatgagttga aagatgagaa tcgatctact aaattattat ctgaactaaa      2940
     aacagatcac ataccttgta actataaaca aaaattgatt gaactttgta ctaaatacaa      3000
     tgacgtattt gccttaaaag gagatacgct tacatgtaac aatttctaca gacaatgtat      3060
     aaacttaaac gataatagtc cagtatacat aaaaaactac agaatccctg aagtacacag      3120
     aaacgaagtt aatacacagg ttgaaaaaat gttaaacgat ggaattattc gatcatcatt      3180
     ctcatcctac aactctccca ttttgttggt tccaaagaaa tcaaccaacg atgaaaagaa      3240
     atggcgcctc gtggtcgatt ataggcaact taataaaaaa ataattgccg ataaatttcc      3300
     tttacccagg atagatgaca tattagatca actgggtaga gccagatact tttcaactct      3360
     tgatctgatg tcaggatttc atcagatcga gatagaagaa aattccaaaa attataccgc      3420
     tttttccacg actacaggtc attatgaatt caataggtta ccgttcggat taaatatttc      3480
     tccgaacagt ttccaaagaa tgatgagtat agcactcagt ggtttaccac ccgagtgtgc      3540
     ttttctatac atcgatgaca ttatcgttat cggatgttct atagatcatc acatgaaaaa      3600
     tttagaacaa gttttcaaga aacttcaaca ttttaacttg aagctaaatc cggaaaagtg      3660
     taattttttt tgtgcagatg ttacctacct ggggcatcat atatctcgac atggcatatt      3720
     accagacaaa tccaaacatg caactatcat aaattaccct acaccacaaa attgcgatga      3780
     tgtcaggagg ttcgtagcct tctgcaacta ctataggaga tttataccct atttttcaga      3840
     aattgcatca cctttgaatg cactcttaaa gaaaaatgca aaattcattt ggaatgaaga      3900
     ttgtaaaaat gcttttgaag agctgaaaaa caaattaatt tcaccacaaa tacttaaatt      3960
     cccggatttt acaaaacaat ttatactaag tactgacgca tcgaaaaatg cttgtggcgc      4020
     agtgctatca caaccatacg gtgatattga cttacccatt gcatatgcga gcagaacttt      4080
     cactaaagga gaaagaaaca agtccacaat cgaacaggaa cttactgcga ttcactgggc      4140
     aataacatat ttcagaccat acctctacgg cagacggttt actgtgagaa cagaccatcg      4200
     tccgctagta tttctatttt cgatgaaaga cccatcctcg aaactgacaa ggatgagaac      4260
     tgatttggaa gaatttcatt tcaatataga atacgtgaaa ggaaaagaaa atgtcgggcc      4320
     tgacgcttta tcacgtatca ttatagaatc tgaggaactt tcaaacataa ccgctttgcc      4380
     agtccaaacg aggtctatga caagacagaa accgaatcct caaaacaatg agccagctat      4440
     tgagactgat cacctcagag cgtatgactc gataaataac attgacgcat ttgggttacc      4500
     aaagttagtg ttttcaatct cgaaaaacga cctatatata aaagtaatga ctaaaaatgt      4560
     gaaaaaggat cttgctttag cgcattttcc ttatgcatta aaaaactttg acttgaagac      4620
     atatattgtt acaacaaatg aaatggccaa aaacctaaga atgagaaaat tagcaattgc      4680
     gaacaacaac ataatattct ctttaataga aagacagatg ttcaaaacaa tttgcaacga      4740
     aatattaaga gatgtcgaca taatacttta taaaccagca caaattatta cgtgcgaaaa      4800
     cgaaataaat aaaatcattg cggaaaacca cgatacccct acgggaggac acgtcggtac      4860
     atcaagatta ctaaagaaat taagaagttc attctactgg aacaacatga aagcaactat      4920
     taacaattat gttaaaaaat gcacaaaatg tatacaaaat aaacacacac taaaaactaa      4980
     agaaacgttt atcgaaacca caacaccaac caacccattc gacattgtgt ccatcgatac      5040
     gataggacct ttcacgaaat ccataagtgg aaatcgttac gcattaactg cacaatgcga      5100
     attaacaaag ttcataatag tagtacctat tattgataag caagcgcaaa cacttgcgaa      5160
     agcatttgtc gaaaatatta tccttgtaca tgggtgtccc ttgataatta agtcagacat      5220
     gggaaccgag tacaaaaatg aaatatttca aaacatgtgt gagtatctac acatagagca      5280
     caaatttgca acagcatatc accccgaaac tatgggaagt ttggaaagaa accaccgctg      5340
     tttgaacgaa taccttcgtc aatttataag cgaacaacac gacgattggg atacctggtt      5400
     aaaatactac gttttcaatt acaacacaac cccacatact acacatcaat atacaccata      5460
     tgaattaata cacggtagaa aagctaacat gccacaatca atacaaaatt ttacaaaatt      5520
     agatccaatt tacaattacg attcctattt cacagagtta aaattcagaa tccagtcaac      5580
     tatcaagaaa acaagggaat tattacaaaa atcaaaatta aacagcatca acaaacaagt      5640
     atcagaaagc aatccaatag acgttcagat aggagaaaca atatggttga agaaagaaaa      5700
     tcgtagaaag cttgatgcag tatatacagg tccatttaca gttgttgaag taaaccatcc      5760
     aaatgttacc attgaaagta caataactaa agaaaatcaa attgttcata aaaataggat      5820
     taggaaaata tgattataac ctgaaaattt tatccaaatt ataaaaaaaa aaataaacaa      5880
     aaaaaaatat atatatacat atatcaaaac tatgtaacac agaggcaact ggagagcaaa      5940
     acccaaagaa tgatttcatt tcatttcatg ccattacatc attctctaaa agggggaagg      6000
//
ID   Gypsy-649_AA-LTR repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-649_;
KW   Gypsy-649_AA-I; Gypsy-649_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-511
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-511
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2067-2067 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 511 BP; 154 A; 125 C; 88 G; 143 T; 1 other;
     tgtaagatgg ttgagaacca ctgacataaa acagaatcat aaattaacca aaaggccatc        60
     cgcctcaaaa tatgcttcgc atccaatatg cataacagac aactcaatta caaacatgtg       120
     acactgcaat agctatcgtt ctattctttc actcgtcacc tcccgcgtag gctccgtcct       180
     cgggtgcact cgaacaaaag ggtttcaaat tgcactatcg agtaggggca atgccatcca       240
     aatttctctg attttgcatt cttgtaaatg gttctccagc cgtctctttt tctcttactg       300
     ttaatwtaga taggcaaaca ttgtacgaat catatataag taagaacctt tcaataaagc       360
     aggacttctt ttaaacctac ttcttggcaa gcaatcgact gcgagtcatt aggtccgttc       420
     tggtggatac cgctctggtc caccatagtc cggataccta ttcgtctccg aaaagacctt       480
     ctccaagcaa agtaaaagtg aacttgcaac a                                      511
//
ID   Gypsy-64_AA-I repbase;    DNA;    INV; 3579 BP.
XX
AC   AAGE02025748;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_AA_;
KW   Gypsy-64_AA-LTR; Gypsy-64_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3579
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025748; Positions   24686   28264.
XX
CC   Positions [2603-2875] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           146..2875
FT                 /product="Gypsy-64_AA-I_1p"
FT                 /translation="MPKEEVPSVSGSQAAKVKAVSGVKLIGTLENFVPSAD
FT                 FDDYLERAENFFELNDIKDDTFKRKLIVHFIGLPALKKLQQLLYPDTHRDV
FT                 TYKTVIEKLKSYFSPKKNRIAQSVEFFKRNQKEFENVADFAVELQALSKHC
FT                 VFGEYLDKALRDKFIAGLRNAKIQGELLNSDDDTTFERAVSKAKNLEQIEA
FT                 DLVKMKSKQEYTNRINAGQYMRRSRSKTRGQDDGKHSQQGSRERRSFSKKS
FT                 SRNQGRKVITCFGCGKKVPYTLREKVSDELNRLISENILRPVRHSDWATPI
FT                 VVVPKPDGSVRICMDCKVTVNKVICNEHYPLPNINDVFANLSGYKYFAKLD
FT                 LQGAYMQIKVTEESQKYLVVNTHKGLYAFTRLPFGISSAASTFQRIMDEIL
FT                 ADIEGVHCYLDDILMGSDTIEGLIATLYKVLDQLQRHKVKVNLSKSKFIVQ
FT                 EIGYLGHKVSEKGLSPSAEKVKAIAEAPRPRDVMQLKSFLGMINYYSKFVP
FT                 NLSMKLSPLYALLKKNVRFEWNAQCEKAFTECKKLLLSHNLLELYNPELPI
FT                 VIICDASSNGVGAVLCHRVGEFEKPVFYVSSTLSASEKNYPNLHREALAVV
FT                 FGLTKFFKYIYGKKFTVVTDNKPLASIFDFRKGIPSLTVTRLQKYVHMLSI
FT                 FDFEIEYRPGSKVTNADALSRLPIQGETGVEDVADLRWLSDEAEIIDLEMI
FT                 GQATQDDPRMRELYLSVKNGWNESAVPADLKFYFSNQSCLSLYRNCVMYSE
FT                 RVIVPMSCRKRTLELLHGCHLGVIRMKQSARRYVFWQGLDKEIEEFVQQCE
FT                 VCSSMGRSVKKKFSEWPKALRPFRRIHLDFFHLAGKTFLILMDAYSKWMDI
FT                 TMMQSTDAEALIDALNSVFRIFGVCDTIVSDNGPPFNSNAFLKYAKSLKIE
FT                 LLKSPP"
XX
SQ   Sequence 3579 BP; 1063 A; 591 C; 965 G; 960 T; 0 other;
     agaaatagtg gcgacgagaa aatagcaaaa agtttgcggt gagcgcgtgt ggataaatag        60
     tctatcgtat cgaaaagtaa tcggagcacg tggtcgcgag tgtcgtttga atctacggtg       120
     tgcacagtaa agtaatcgct aggagatgcc gaaagaagaa gtgccttccg tatccgggtc       180
     tcaggctgcg aaagtgaaag cagtcagtgg agtgaagctg ataggaacac tggaaaactt       240
     cgttccaagt gcggacttcg acgattacct ggagagagcg gaaaatttct tcgagctgaa       300
     cgacatcaag gatgatacgt tcaaacggaa gctgattgtc cacttcatcg gattgcctgc       360
     gttgaaaaag ctgcagcagt tgttgtatcc cgacacacac agggatgtga cctacaaaac       420
     ggtaatagag aagctgaagt catacttcag tcccaagaag aaccgaatag cccaatcggt       480
     ggagtttttc aagcgaaatc agaaagaatt cgagaatgtg gcggatttcg cagttgagct       540
     acaagcactt tcaaagcact gcgtttttgg agagtatctg gacaaggcgc tcagggataa       600
     attcatagct ggccttcgga acgccaaaat ccaaggcgag ttgttgaaca gcgacgacga       660
     caccacgttt gaacgagcag tatccaaggc gaaaaacctg gagcaaatcg aggcggattt       720
     ggtgaagatg aagagcaaac aggagtacac caatcggatc aacgcggggc agtacatgcg       780
     acgaagccgt tcgaaaacac gtggccaaga tgatggtaag cacagtcagc aaggaagccg       840
     ggagagacgg tccttttcta agaagagctc aaggaatcaa ggtaggaagg tgataacgtg       900
     ctttggctgc ggtaagaagg tgccgtacac gctcagagaa aaagtctcag atgagttgaa       960
     taggttgatc agtgagaata ttctaaggcc agtgcggcat agtgattggg ctacgcccat      1020
     tgtggtggtt cctaaaccag atggtagtgt gagaatctgt atggattgta aggtgacagt      1080
     gaacaaggtc atttgcaatg aacattatcc gttgcctaac atcaacgatg tgttcgccaa      1140
     tctgagtggt tataagtatt ttgctaagct ggatctacag ggtgcgtaca tgcagattaa      1200
     ggttacggaa gagtcgcaga agtatttggt tgtaaatact cacaaaggtc tgtatgcgtt      1260
     tacgagattg ccgttcggta tttcaagtgc agcgtcgact ttccaaagaa ttatggatga      1320
     aattctggct gatatagagg gagtgcattg ttatctggat gacattttga tgggtagcga      1380
     tactattgaa ggattgattg ctacactgta caaagtactt gatcagctgc agaggcacaa      1440
     ggtaaaggtc aacttgagta agagcaaatt catagttcag gagataggtt atttgggtca      1500
     caaggtgtcg gaaaagggac ttagtccatc ggcggaaaag gttaaggcaa tcgcggaagc      1560
     tcctcgacct agagatgtga tgcagttgaa atcgttttta gggatgatta attattattc      1620
     gaagttcgtt ccaaatttgt cgatgaagct tagtccactc tacgcgctgc taaagaaaaa      1680
     tgtgcgcttc gaatggaatg cacagtgtga aaaagctttc actgagtgca aaaagctttt      1740
     gctgagtcac aacctgcttg agttgtataa tcctgagtta ccgatcgtta ttatttgtga      1800
     tgcgagctca aatggggtcg gagcagtgtt gtgtcataga gtaggggaat tcgagaagcc      1860
     agtcttctat gtgtctagta ctctctctgc gtcagagaaa aattatccga atcttcatcg      1920
     tgaggcgctt gcggtagtat ttggattgac gaagttcttc aaatacattt acgggaaaaa      1980
     gttcacagtt gttaccgata acaaaccgtt ggcaagcatt tttgatttta ggaagggtat      2040
     tccgtcattg accgtcacta ggttgcagaa gtatgtccac atgttgtcaa tatttgattt      2100
     cgaaattgag taccggccgg gttcgaaagt tacgaacgct gatgctttga gtaggttgcc      2160
     cattcagggt gagacaggag tggaagatgt tgcggatctc cgttggttga gtgacgaagc      2220
     agaaattatt gatctggaga tgatcggtca ggccactcaa gatgatccga gaatgagaga      2280
     gctttatttg agtgtgaaga acggatggaa cgagagtgcg gttccagcag atttgaaatt      2340
     ctacttttcg aatcagagct gtttgtcgtt gtacaggaac tgtgtgatgt attcggagag      2400
     agtaattgtt ccaatgtctt gtcggaaacg tactttagag ttgttgcatg gatgccatct      2460
     tggtgttatt cgcatgaaac agtcggctcg aaggtatgtg ttttggcagg gtttggataa      2520
     ggaaatcgaa gaattcgttc agcagtgtga ggtgtgtagt agtatgggac gatctgttaa      2580
     gaaaaagttc tctgaatggc caaaagctct tcgcccgttt cgtcgaatac atttggattt      2640
     tttccactta gcagggaaga cgtttctgat tttaatggat gcctactcta aatggatgga      2700
     tattacgatg atgcaaagta cggatgcaga agcgttgatt gacgcgctta attcggtgtt      2760
     cagaattttt ggggtttgcg ataccatagt cagtgacaat ggtcctccgt ttaatagtaa      2820
     tgccttcttg aagtacgcaa aatcgttgaa aattgagttg ttgaaaagcc cgccttaatc      2880
     gccagaaagt aatgggcttg cagagcgagc agtccagact gctaagagtg ggattaagaa      2940
     gctacttgtc gatccgaagt ttaatcacat gaagttgctg gcgattgtag atatattttt      3000
     atttagttat cgtaacagtt atagtcaggc tatcgattgt acgcctgcta gtaaggtatt      3060
     ttcgtttatt ccgaaaacgg atctggactc taatttgggt atgaaattcg aacagttgaa      3120
     gaagaaagtt aggtttaatt tagacgtaaa cgatcaggaa actttgaaag atggtggaag      3180
     gagttgccaa ccaaaatata aagtaggtga tctagtgtgg tataaaagtg aggttaggtc      3240
     caccagatct tggctggaag cagaaattgt gggagtgaat agtactaata cgttttatgt      3300
     tgacatcaat ggagcggtaa aattagctaa tagaaatcag ttgaaaccca gagttctcaa      3360
     aagaaatgac tacatctgcc ctaaagttgg aattgaaaaa agagttccag tgagaacccc      3420
     caatgaaccc agattattga gaagtgttag tgttgattct ccgagaagtt ctcctgataa      3480
     aacaatagaa gttcgtagga gtagaagagt agggaagaag ccggagagat tagtagtagg      3540
     ttcattataa ttgtatagaa tcgaatttaa gcagggagg                             3579
//
ID   Gypsy-64_AA-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   AAGE02025748;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_AA_;
KW   Gypsy-64_AA-I; Gypsy-64_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-193
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02025748; Positions   24493   24685.
XX
SQ   Sequence 193 BP; 63 A; 30 C; 35 G; 65 T; 0 other;
     tgttaaatag ttataataga cccctcgtca taagatctag ataaactgtg gtagatgtac        60
     ttgcataaga actatcttga agataacaat tatcttgaca tgaattgttt ttccggttta       120
     ctactataaa aggaattgta acgagaggct cagcctcttt ctcctgttgg attttgtgga       180
     ataaagaaca tca                                                          193
//
ID   Gypsy-64_AnFu-I repbase;    DNA;    INV; 4472 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4472
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2948-2948 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..4426
FT                 /product="Gypsy-64_AnFu-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MPTKDEMVCAIESAGEVVPPTATIAQIRKLFDEINGV
FT                 TEEKTTIIACTDAAAIFDAGDSVPVETDAAAIFDAGDSVPVETDASVPAIL
FT                 QAKSDAAVLPRDMSSLEDRIRQLEQEKKILLLQKEIAELSARIDGKAAATI
FT                 ENAPTAVRDAFDCIKSMVTPFSGDNGDSISAWFDEVEKATLMLQLNEMSTL
FT                 IVTRRLLSGTAAMFANTINIRSYNELKEQLNSAFGKGPTLECVYQELRRRR
FT                 LLPTETTFRYVLEMEKIAKKGFIPQEELVTIIIDNMGDASNTSAMRYSANT
FT                 VEELKKMLAKYEQMRMLKLPGSSTRNNTRQASSTGPEVPALDTRCFNCSAF
FT                 GHFRDKCPKPLRPPGSCFRCHQTTHVYKDCPERKTTSSAAIFTADTDSVTK
FT                 LQETQEVSVAFKLRDCWSDEIDCVRCLFDSGSPASFIDESLVPKSCLNTSE
FT                 ASKYFGLGNKQLRTRGRLQCRIKFNDHNKYHIFIILCKGSMAWPLIIGRDL
FT                 LNKFDIHLTQVKFKYNKPQLLNLNNKPNLPTLNSRTFSLLQHIGILKQDNT
FT                 KKKEQVAPLDESFAELCAINIDEKEEPHINYNLAKEQIATLKKTIDANYFH
FT                 IPSDQIKFPDHSMKINLIHDTPVYCKPRRLSYAERNQVREIVKDLLDRNII
FT                 RPSNSPYASALVLVRKKNGEIRKCVDYRPINKITIRDNFPIPLIDTCIEHL
FT                 SNKHFFSLLDLKSGFHQVRMHEDSIKYTSFVTPDGQYEYLNMPFGLKNAPS
FT                 EFQRFINSILREFIDAEKIVVYLDDIIIASVDFDTHVQVLSEVLRKIRQSG
FT                 LELRLNKCQIAQNELDYLGYKANSHGIRPSDKHILAIKNYPMPKDIKQVQR
FT                 CLGLFSYFRRFVPSFSILAKPITNLLRANKPFIFDSDCTIAFETLRQKLIE
FT                 SPVLSIFDPTRETELHCDASSIGFGSVLLQKQEDNKFHPIAYFSKATSKDE
FT                 SKLHSYELETLSVIYALKRFHSYVHGIPIKIITDCNSLVETLKNRNASAKI
FT                 ARWSLFLENYNYTMHHRPGTAMSHVDALSRSFSVNIIEEIDIDSQLQITQS
FT                 RDPDIEAIKNELETRPVKGYVFQDGLVYRQSPSNKLQLYVPREMIDNVIRY
FT                 THEKIGHLGTGKSCDQISKHYWFPLMKTRVENFIKNCLKCIIYTSPARNNN
FT                 RNLHSIPKVASPFDTIHIDHLGPLPCIQSKKKYVLVVIDAFTKFVKLYPTV
FT                 STNAQEVCNALSQYMAYYSRPGRVISDRATCFTSALFEKFLNDRGIYHVLN
FT                 ATSSPQANGQVERVNRVLRPILSKLSNSIDHGNWTLQLSKAEYALNNTVHA
FT                 STKFTPSVMLFGVEQRGPVVDELTEFLEMKSNTQSRDFESIRRQASENIVK
FT                 SQKTNEQQFLKKNYPAPIYRTGDYVVIKNIDTSPNSNKKLIAKYRGPYVIH
FT                 KILPNDRYVVRDIDGYQLTQLPFDGILESTKLKHWVQPHTFQNINNSTGNT
FT                 SSYV"
XX
SQ   Sequence 4472 BP; 1513 A; 912 C; 820 G; 1227 T; 0 other;
     tctcagaagt gggatcatca tgcctacaaa agacgaaatg gtgtgtgcga tcgagtctgc        60
     cggtgaagtt gtacctccta cggcaacaat cgcgcaaata agaaaattgt tcgacgaaat       120
     taatggtgtg actgaagaaa agaccaccat cattgcttgc accgacgccg ccgccatttt       180
     cgacgcaggc gattctgtac ctgtggaaac cgacgccgcc gccattttcg acgcaggcga       240
     ttctgtacct gtggaaaccg acgcttccgt gcctgcgatt ctacaagcga aaagcgacgc       300
     tgcagttcta cctcgcgata tgagcagttt ggaagatcgc attcgtcaat tggagcagga       360
     gaagaaaatt cttttgctcc aaaaagaaat agcggaactg agcgcacgaa ttgacgggaa       420
     agcagctgcc accatcgaaa atgctcctac tgcggtacgt gatgcgtttg actgcataaa       480
     gagtatggtg acgccattta gtggtgacaa tggggatagc atcagtgcgt ggtttgacga       540
     agtggagaaa gcgacactta tgctgcaatt aaacgagatg tcgacgctga ttgttactcg       600
     tcgtttgctt tccggaactg cagctatgtt cgcaaatacg attaacatac gaagctataa       660
     tgaactaaag gaacagctta attcagcatt cggtaaaggc cctacattgg agtgtgtgta       720
     ccaagagctt cgacgccgtc gccttttgcc aaccgaaact accttcagat acgtcctgga       780
     aatggaaaaa attgctaaaa aaggattcat accccaagag gaactagtga caatcattat       840
     tgataatatg ggtgatgcga gcaacacaag tgcaatgcgc tattcggcca acaccgtgga       900
     ggagctgaaa aaaatgttgg ctaaatacga gcaaatgcgc atgttaaaat tacctggctc       960
     gtctacccgc aacaacacac gacaagcttc ctcaactggt ccagaagtcc cagccttgga      1020
     tacccgctgc ttcaactgtt cggctttcgg tcattttcgt gacaagtgtc ctaagcccct      1080
     tcgcccacca ggttcctgtt tccgatgcca tcagacgacc catgtatata aagactgccc      1140
     tgaacggaag acaacatcga gcgcagcgat ttttacggcc gatacggatt cagttacgaa      1200
     attgcaagaa acacaggagg taagtgttgc ctttaaattg agagattgtt ggagtgatga      1260
     aattgattgt gtgcgttgtc tttttgattc aggaagtcca gcaagcttca ttgatgaatc      1320
     attagtccct aaatcatgct taaacacaag cgaagcttca aaatatttcg gattaggtaa      1380
     caaacaatta agaacgcgtg gacggctcca atgtcgcatt aaatttaacg accataacaa      1440
     atatcatatt tttattatac tctgtaaagg ctcaatggca tggccattga ttattggtcg      1500
     tgatttatta aataaatttg atattcatct cacgcaagtg aaatttaaat acaataaacc      1560
     acaattatta aatttaaata ataaaccaaa ccttcctact ctaaactcac gcacattttc      1620
     actactccaa catatcggta ttttgaaaca agataacaca aaaaagaaag aacaggttgc      1680
     acctttggac gaaagttttg cagaactttg tgcgattaat atagatgaga aggaagaacc      1740
     acatattaat tacaatcttg caaaggaaca aatagctaca cttaaaaaaa caatagatgc      1800
     taattatttt cacattccat cagaccaaat taagtttcct gaccatagta tgaaaataaa      1860
     tctaattcat gacacgccag tatattgcaa accacgacgc ctctcatacg cggaacgaaa      1920
     ccaggttcgg gaaatagtaa aagatttatt agacagaaat ataattcgtc ctagcaattc      1980
     cccatacgct tcagcactcg ttctagttcg taaaaagaac ggagagatta gaaaatgtgt      2040
     agattacaga ccaattaaca aaattacgat tagagacaac tttcccattc ctttaataga      2100
     tacatgtata gaacatttga gcaacaaaca tttttttagt ttgctggatt taaaaagcgg      2160
     gtttcatcaa gtcagaatgc acgaagactc tataaaatac acatcattcg tcacaccaga      2220
     tggccaatac gagtacttaa atatgccatt tggacttaaa aatgccccat cggagtttca      2280
     aagattcata aattcaattc taagagaatt catagatgct gaaaaaatag ttgtttattt      2340
     agatgatatt atcattgctt cagtagattt tgatacgcat gttcaagttt taagcgaagt      2400
     tcttcgtaaa attcgtcaaa gtggcttaga gttgcgcctt aataaatgcc aaattgctca      2460
     gaacgaacta gattatttag gttacaaggc aaattcacat ggtatacgtc ctagtgataa      2520
     acatattttg gctataaaaa attaccctat gcctaaagat attaaacaag ttcaaagatg      2580
     cctcggactc ttctcgtatt tccgccgttt tgtaccatca ttttctattc tagccaaacc      2640
     aattacaaat ttacttcgag ctaataagcc gttcattttt gactcagact gcacgatcgc      2700
     atttgaaacc cttaggcaaa agctgatcga gtccccagtg ctatctattt ttgatcccac      2760
     ccgtgaaaca gaattgcact gtgatgcgag ctcaatcggt tttggatccg tattattgca      2820
     aaagcaagaa gacaacaaat ttcatcccat tgcctatttt tcaaaggcca catctaaaga      2880
     cgagtccaaa ttacatagtt acgaactaga aacattatct gtcatatatg ccctcaaacg      2940
     atttcatagc tacgtccatg gtattccgat aaaaataatc actgattgca attctcttgt      3000
     agaaactttg aaaaaccgaa atgcttctgc aaaaattgct cgttggtctc tttttcttga      3060
     aaattataat tacactatgc accatcgacc gggaactgca atgagccatg ttgatgctct      3120
     aagccgatcc ttttctgtga acataattga agaaatagat attgatagcc aattacaaat      3180
     aacccaatcc cgagacccag acatagaagc aatcaaaaat gaattggaga ctaggcctgt      3240
     gaaaggatat gtttttcaag atggtttagt ttaccgacag tcaccttcaa ataaattgca      3300
     gctttatgtt cctagagaaa tgatagataa tgtaattcga tatactcacg agaaaatagg      3360
     acacttagga actgggaaaa gttgtgatca aattagcaaa cattattggt ttcctctaat      3420
     gaaaactaga gttgaaaatt ttataaaaaa ttgcctcaaa tgtatcattt acacttcacc      3480
     cgcaagaaat aataatcgaa atctccatag catacccaaa gtagcatctc catttgatac      3540
     gatacacatt gatcacttag gccccctacc atgtattcaa tcaaagaaaa aatatgtatt      3600
     agtagtaatt gatgcattca caaaatttgt caaactatac ccaacagtct caacaaacgc      3660
     acaagaagtt tgtaatgctt tatcacaata tatggcttat tatagtcggc ctggtcgtgt      3720
     tattagtgat cgagccacgt gtttcacatc cgcactattt gaaaagtttt tgaatgatcg      3780
     agggatttat catgttctga atgcaactag ttcaccacaa gcaaatgggc aagtagagag      3840
     agtaaatagg gtcttacgac cgattttaag caaactgtcc aactccatag accacggaaa      3900
     ttggaccctt caactatcca aagccgagta tgccttaaac aatacagtcc atgcatctac      3960
     caaatttacc ccatcagtaa tgcttttcgg agtcgaacaa cgtggtcccg tggttgatga      4020
     attaactgaa tttttggaaa tgaaaagtaa tacacaatct agggattttg aatccatacg      4080
     tcgtcaagct tctgaaaaca ttgttaaatc tcaaaaaaca aatgaacaac aattcctaaa      4140
     gaaaaattat ccagcaccta tatatagaac aggagattac gtagttataa aaaatataga      4200
     tacgtcacca aactcaaata aaaaattaat cgcaaagtac agaggaccgt acgtaattca      4260
     taaaatccta cctaatgatc gctatgtagt tcgtgatatt gacggttacc aattaaccca      4320
     attgccattc gatggaatat tagaatcaac caaattaaaa cactgggtgc aaccacatac      4380
     gtttcaaaat attaataact ctacaggcaa cacttcgtcc tatgtataga ttaagtgaat      4440
     tgaggccaat tcatttgtca ggttggccga gt                                    4472
//
ID   Gypsy-64_AnFu-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-195
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2876-2876 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 195 BP; 60 A; 45 C; 30 G; 60 T; 0 other;
     tgtaaatagt taaaaattat aaaccttagc cacctactca cctgatctat acagatcttg        60
     acagctgtca cggtgacagc tcaacatttg ccaaaagaat ggcactgtga ataaaggatc       120
     attaccgttt gaaatttgaa accgacaaca tcttcagcct tccgtgtttt atttcttccg       180
     tgcctgcatt ttaca                                                        195
//
ID   Gypsy-64_CQ-I repbase;    DNA;    INV; 5595 BP.
XX
AC   AAWU01018564;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_CQ_;
KW   Gypsy-64_CQ-LTR; Gypsy-64_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5595
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 507-507 (2011).
XX
DR   GenBank; AAWU01018564; Positions   10443    4849.
XX
CC   Positions [2827-3363] - Reverse transcriptase
CC   Positions [4531-4998] - Integrase core
CC   'ATCCT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           793..1950
FT                 /product="Gypsy-64_CQ-I_1p"
FT                 /translation="MNQMSASSISVPECKASVEGEDISRLDYEYWEDLLVN
FT                 SLTLAGITDEAMKMVVLKVKAGRKLLEVLKGTESTNEAPDESTHPFANAMF
FT                 RLKKHFESISDVMIHRRKLATMVQTETEGDKAFIQRVATEAQQCGYSEDQR
FT                 FDEILNTVAVRASHHKVRAEAVKWMNRRAKNPKQEGVTLQEFIEKIKEIET
FT                 IRLNEDYVTKRQAELNAAPVNAIRAVSRPSPEIAGPSRYGDDRTVAGTSRS
FT                 SAYKMRSAYGKSAYQKPNNQVYGRMPYQKPYSQGNGRKQFQPSNNRGGRNL
FT                 QILNEPDALDPDRCPRCNSISHSEQNCYASRLTCYTCGRVGHMFRACPFSF
FT                 APGNTRTSPDQNRRAEPVLALMDAKPEEKEPEGEKPDKSVSEV"
FT   CDS           2200..5493
FT                 /product="Gypsy-64_CQ-I_2p"
FT                 /translation="MQKQDAEPTSGVALAVEVELFNDGIINAKVSGMVCQF
FT                 LIDSGSQVNTITHTTFEQLRANASYNEGLHNVRHGTDRQLKAYAKSDGIHV
FT                 ICTFEAFLEISDDRPILLEKFYVVKEQRSLLSRATSTRYSVLQLGLKVPVN
FT                 TGWTADDSWMNIGFINLVSEVSVQFPKFNIPPIKIPYDKTMPACRNIFTNI
FT                 PAAMKQAVQRRLEEQVSAGIIERVTDAMDAAFCSSMLVVPKGNDDFRLVID
FT                 LRGPNRYILRSPYSMPTLEKILVQLEGAQWFSTIDLQSAFFHIELEEDSRH
FT                 LTNFMTEFGMYRYIRLPFGLSNAPDVFKEVMERKVLTDCEGVLNYLDDILV
FT                 FGRSKEEHDKNLAAVMDRLKDHNVRINTSKCVFGSKEVKFLGFELTDKGWR
FT                 IEHGKLSAIKNFRRPSSCAEVKSFLGLITFVDKFLVHRATKTEFLRALANA
FT                 DTFYWTEAEETEFESLKNHTVHAIKVLGYYSCSDFTELYVDASAVGLGAVL
FT                 VQHDSDGTPRIIACASKSLTNAEANYPQSHREALAVVWGVERFSFYLIGRP
FT                 FVIRSDASSNEFIFHTNYRIGKRAFSRAEGYALRLLPYKFRIERVKGDENV
FT                 ADALSRLIHVTQPAVPFEEDCSNHVLCSLDAGNNNKRIINFHNSCFMTRYF
FT                 DIGCMEITMSEIESSSERDQEMELLRAALDSGSWPAELRGYEAQRNQIHKL
FT                 GALLCKDDRIILPKDLRQRAMESAHGGHIGVVAMKRVLRDFFWWPQMSKQT
FT                 EKFVKSCETCVLLSKRNPPVPLASRELPEGPWEILQIDFLSVPGFGSGEFL
FT                 MVIDTYSRFLSVTEMQRTNADATNTALIQIFKRWGLPRIIQSDNGPPFQGS
FT                 VFCEFWEAKNVKVRKSIPLSPQSNGMIERYNQPVIKTLSAAKLEGRSWRLA
FT                 LETFVHHHNTLVPHSRLNVTPFELLVGWKFRGTFPSLWSATKDLDRIDVRE
FT                 ADAEQKLTSSKLADRVRRAMPSDVRVGDSVFLKQQKKSKSDATFGSEKYTV
FT                 VAQDGSKVVICSGNGVQYTRSVNDLKKVPVAQDQANGSLVNSSPVVDHDSD
FT                 DEQIDVATRDENSGSRIGLRNRGLVRKPSRYNDDYVYQIFE"
XX
SQ   Sequence 5595 BP; 1656 A; 1245 C; 1421 G; 1273 T; 0 other;
     atggcgcagg agtagcctcc aagtaagtat agtgtggtaa aaaaaaaaat gaagaaaagt        60
     gatagcgatt ttaatagccg gggcgatatc agtgattgtg gaaaaaaaat aaattaaaat       120
     gtgttaaatc tacacgtgtg attcccagca aaaaagaatg aaaagctgga tgaaaatgaa       180
     attcccagca aaaaaggatg aaaagctgga tggaaataag gctttcaacc aaagaccagc       240
     aaaaaaagaa taaaaagctg gcaaaagtaa aacgaggaaa tttcccagta aaaaagtatg       300
     aaaagctgga tgataatgga ttcctaaagc ctaacacgtg gaaaaatgga cagtaaaagc       360
     cggcttagtt gacgcgtaaa aaaaaggaaa aaaaaggaaa atctaaagta aatgaatgat       420
     tttgcaacta ttgagaaccg ctgatcgcca atcactgtta tcgccttaaa taattcctat       480
     gtcaaaaaaa aaggattgta actaaaacgg tacctatcgt tgaaactgaa ttgcaggaag       540
     aaaagcagca aaattagtgc tttcgaaaag gagttgaagg ctgcaaactc gagcaacgct       600
     gagctcgaaa aggaactgga aagggcccaa gaaaccattc gcgcgctcca gtccagcctg       660
     tcctcggccc ggaacgaatc ggaagaggtg aacagcgagg agttcgacat acaacccgga       720
     cgatgcagca caaaacgctt gtccaggatc aacaacagtc tgccgtgcga tacttcccag       780
     tttgttactt cgatgaacca aatgtcagcc tcatcgatca gcgtgccgga gtgcaaagct       840
     agtgtggaag gtgaggacat ttcacggcta gattatgagt actgggaaga tctgctggtc       900
     aattcgctca cgctcgctgg catcacggac gaagcaatga aaatggtggt gctcaaggtg       960
     aaggccggcc ggaaacttct ggaggtcctt aaagggaccg aatcgacaaa cgaggcgccg      1020
     gatgaaagca cgcatccctt tgcgaatgct atgtttcgcc tcaagaagca cttcgagtcc      1080
     atttcggacg tgatgattca tcgcagaaaa ctcgctacaa tggtccaaac cgagacggaa      1140
     ggtgataaag ctttcatcca acgagtcgcc acggaggcgc agcagtgcgg atattccgag      1200
     gaccagcgat tcgacgagat tttgaacacg gtggccgttc gagcatcgca tcacaaggtg      1260
     cgggcagaag cagttaagtg gatgaaccgt agagcaaaga acccgaagca ggaaggagtg      1320
     actctccagg agttcatcga gaagatcaag gaaatcgaga caatccgtct caatgaagac      1380
     tacgtgacca agaggcaagc ggaacttaat gcagcaccag tgaatgcgat tcgtgcagtc      1440
     tcacgcccat caccggagat cgcgggacca tcgcgatatg gtgacgatcg aactgtcgcc      1500
     ggcacgtctc gttccagcgc atacaagatg cgttcggcat acggcaagtc ggcgtaccaa      1560
     aagccgaaca atcaagtcta tggaaggatg ccgtaccaaa aaccgtacag ccaaggcaac      1620
     gggaggaagc agttccagcc gtccaacaat cgcggtggca ggaaccttca gatactgaac      1680
     gaaccggacg cgctggatcc cgatcgttgt ccgcgctgca acagcatatc tcattcggag      1740
     caaaactgct atgcctctcg cctgacctgt tacacatgcg gccgcgtggg ccacatgttc      1800
     agagcgtgtc cgttttcatt tgcaccggga aacacacgca cttcgccaga ccagaaccgg      1860
     cgcgctgaac cggtgctggc gctaatggac gctaaaccgg aggagaagga gcctgagggt      1920
     gaaaagcctg acaagtctgt aagtgaagtt tgatgtttac ggtgagtctg agagtggatt      1980
     taatcgaaca atgttgaaat aatcttgtta tgttcgaatg tggatttatt gttattgaat      2040
     taattctcaa aataaagaaa atgaatcagt ttgaagtaac gaggttttat ttactttcaa      2100
     catctatgca ttcactcacc gaatcagact cattgataac aatgctagct gatgattgaa      2160
     ataatttacg atatattcta aacttgatag gtcactggaa tgcagaaaca agacgctgag      2220
     cctacctctg gcgttgcatt agctgtagag gttgaacttt tcaatgacgg aatcatcaat      2280
     gccaaagtct ccggaatggt ttgtcagttt ctgattgatt cgggttcaca agtgaacacc      2340
     ataactcaca cgacatttga acaacttcgc gccaacgcat cgtataacga aggattacac      2400
     aacgtccggc atggcaccga tcgtcaactg aaggcgtacg ctaagtctga cggtattcac      2460
     gtgatatgca ctttcgaagc tttcctggaa atttctgacg accggccaat actgctcgag      2520
     aaattttatg tggtcaagga acagcgatcg cttctcagca gagcaacgtc gacccgttac      2580
     agtgtgctcc aactcggctt gaaagttccc gtgaatactg gctggacggc ggacgacagc      2640
     tggatgaata tcggattcat caacctagtt tcggaagtgt cagtacaatt cccgaaattt      2700
     aacatccctc cgatcaagat tccctatgat aaaacgatgc cggcttgtcg taatatattt      2760
     acgaacatac ccgccgctat gaagcaagca gttcaacgga gactcgaaga gcaagtatca      2820
     gcgggaatca ttgaacgagt gactgacgcg atggacgcgg cattctgctc gtctatgctc      2880
     gttgtaccga aaggtaatga cgatttccga ctcgtgatcg acctgcgggg tccaaatcgt      2940
     tacatccttc gcagcccgta ctccatgccg accctggaaa agattctggt tcaactggaa      3000
     ggcgctcaat ggttcagcac aatagatcta caaagtgcgt tctttcacat tgaattggaa      3060
     gaagattctc gacacctgac caacttcatg accgagttcg gtatgtaccg atacatacgc      3120
     cttccgtttg gattgagcaa cgcacctgac gtgtttaaag aggttatgga gcggaaagta      3180
     ctgaccgatt gcgaaggagt tctgaactat ttggacgaca tactggtgtt cggcaggtca      3240
     aaggaagagc acgacaagaa tttagctgcc gtaatggaca ggctgaaaga ccacaacgtg      3300
     cggattaata cgtccaagtg tgttttcggg agcaaggaag ttaaatttct gggatttgaa      3360
     ctgacggaca aaggatggag aatcgaacac gggaagctca gtgcgatcaa gaatttccga      3420
     cgtccatcat catgcgctga agtaaagagc tttcttggtc taatcacgtt cgtggacaaa      3480
     ttccttgttc accgagccac gaaaacggaa ttcttgagag ctttggccaa tgcggacaca      3540
     ttctactgga cggaagcgga agaaaccgag ttcgagtcgt tgaagaacca cacggtccat      3600
     gccatcaagg ttctcggata ttatagctgc tcagatttta ccgagctgta cgttgatgca      3660
     tctgccgtcg gactgggcgc agtgctggtt cagcatgact ctgatggaac tccaaggatc      3720
     atcgcatgcg cgtccaaatc ccttacaaat gctgaagcaa attaccccca gtcacacaga      3780
     gaggcattgg ccgttgtatg gggagtcgaa cggttttcgt tctacctcat cggaagaccc      3840
     ttcgtgatac gttcggacgc ctcttcaaat gagttcattt tccacaccaa ctaccgcatc      3900
     gggaaacgag ccttcagccg agccgaagga tacgcattgc gactcttacc ctacaagttc      3960
     cggattgaac gagtgaaggg cgatgaaaat gtagcggatg ctctctccag actgattcac      4020
     gttacgcaac cggctgtacc atttgaagag gactgttcaa accacgttct ttgctcgtta      4080
     gacgcaggta ataacaataa acgcataatt aacttccata atagttgctt tatgacacgt      4140
     tactttgata taggttgcat ggagattact atgagtgaaa tcgaatctag ctctgaacgc      4200
     gatcaagaaa tggagttgct acgtgccgct ttggatagtg gatcgtggcc agcggaacta      4260
     cgcggttacg aagcccaacg gaaccagatc cacaagcttg gtgctttgct gtgcaaggac      4320
     gaccggatta tcctcccgaa ggacctgaga cagcgagcta tggaatcggc acatggtgga      4380
     catatcggag tggtggcgat gaaacgtgtg ctgcgagatt tcttttggtg gccgcagatg      4440
     agcaagcaaa ctgaaaagtt tgtcaagtcc tgtgagacct gcgtcctgtt atccaaacga      4500
     aaccccccag tgcccttggc atctcgtgaa cttcctgaag gaccgtggga aatattgcag      4560
     atagatttcc tatctgtgcc aggattcggc tcgggtgagt tcctaatggt aattgacaca      4620
     tattcacgat tcctgtcggt aacggagatg cagcgcacaa atgcagatgc aaccaacacg      4680
     gccctgattc aaatatttaa acgctgggga ttgcctcgaa tcatccagag cgacaacggc      4740
     cccccttttc agggttcagt gttttgcgaa ttctgggaag ccaaaaacgt taaagtgcgt      4800
     aagtcgatac cgctgagccc acaatcgaat gggatgatcg agagatacaa ccagcccgtg      4860
     atcaaaacgt tgtcggctgc aaagttggaa ggacgaagct ggcgattggc cctggaaaca      4920
     tttgtgcacc atcacaacac gttggtgccg cactccaggc ttaatgtgac accttttgag      4980
     ttgctcgtcg gttggaaatt ccgcggtacg ttcccgagtc tatggagtgc gacaaaagac      5040
     ctcgatagaa tcgacgtacg agaagctgat gcagagcaaa agctgaccag ttccaaactg      5100
     gcagatcggg tacgtcgtgc catgccttcg gatgttcgag ttggcgatag cgttttcctg      5160
     aagcagcaga aaaaatctaa atcggatgcc acgtttggtt ctgaaaagta tacagtggtg      5220
     gctcaggatg ggtcaaaggt ggtgatttgc agcggaaacg gtgttcagta taccaggagt      5280
     gtcaacgact tgaagaaggt tccggtagct caagaccaag ccaacggctc gttggttaat      5340
     tctagtccgg ttgttgatca tgattcagac gacgagcaga tcgatgtagc gacacgagac      5400
     gaaaattccg gaagccgcat aggtttgcgc aatagagggt tggtgaggaa accatcgagg      5460
     tataacgacg attacgttta tcaaatcttc gaataactgc gattattaca catacgtgaa      5520
     atgaagtcca ataaatcgta ctaaacatta aacagggttg gtcttatttc ttgaaagagt      5580
     acaggaggag aatat                                                       5595
//
ID   Gypsy-64_CQ-LTR repbase;    DNA;    INV; 570 BP.
XX
AC   AAWU01018564;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_CQ_;
KW   Gypsy-64_CQ-I; Gypsy-64_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-570
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 508-508 (2011).
XX
DR   GenBank; AAWU01018564; Positions    4848    4279.
XX
SQ   Sequence 570 BP; 180 A; 110 C; 153 G; 127 T; 0 other;
     tgtgggatat atacctagtt aataataata ataaaaaaag tgttcatttc tcaagttgcc        60
     gactaaattt gaatatttag ctgaaccatg acgaacgtgt aaacaaaccc ctgtttgggc       120
     taatttcaat catcttacta gaatctcgtc agcgtgttca acaaacgcaa agaacgcgcc       180
     cctagacaaa cgcagactcg caccggaaac tggttgagaa tacgaacgag cccgaagacg       240
     ggatcacgat ccgatactgt gcgagagtaa ttgagcatga gagattgtgt gttgagagag       300
     agagattata tgtgagaacg gtgtgatggg tatgctttta aagtggagtg agtgagagag       360
     aatcatttcg agcgagagat ggtgagcacg agagagatcg gcaaggcgag tgtgagagta       420
     gcacgaatgg aactctcttc actacagccg aaggagaacc gcagcaaccg agtgattcta       480
     catcgtattt ctgaagcgaa cagttgagtt gctgttgagc tccgccgtcg cccaagatgg       540
     cgagcaaacg tgcagcagca ggacacgaca                                        570
//
ID   Gypsy-64_DEl-I repbase;    DNA;    INV; 5806 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_DEl-I;
KW   Gypsy-64_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5806
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7083-7083 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1230..2543
FT                 /product="Gypsy-64_DEl-I_1p"
FT                 /note="RING finger and gag."
FT                 /translation="MDTEASGSYKCVLCDKTLSSDQVGRAKCGHEFHKECL
FT                 ESHAKAKGNCPLCRPKGEGAKPKVPGSAAGKPATSTADAEAIGNIVSQQLK
FT                 SLQHDLLSQLSDQMARLIQANIAAEFQALPRPVGSLPNSRVPSEVGEIEIE
FT                 ARPISAFSNSDLATRPDKVGQIISSWKLRFNGGQDGLSVDKFLYRVEALTH
FT                 QTLKSRFDLVCSNASVLFDGKAREFYWRFHKTSDSTRWDLLTEALRKQFRD
FT                 TRTDVDLRESIRDRKQKERENFDAFYDAIVQITDCLEVPMPEKDLIETLRR
FT                 NLRPEIRHELLNVSIDSVQKLRDICRRRESFLEDVRRSYGYQKAVPYRKQV
FT                 SELVPEYLSDDASEFSDADLGAEIDAIALVCWNCRREGHRYHDCEEKRKIF
FT                 CYGCGTPNTYKPSCIKCQKNGKQNTRPRHQPCVPRKPANQDVSQ"
FT   CDS           2459..5731
FT                 /product="Gypsy-64_DEl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPKKRQAEHTTPTSAVCSSKASQPRCQPIIPLSPPNT
FT                 YKKSDINNCHKNSPNTLPALKTKLARSDSRNAKRMRDFWRAAKNINAIRYK
FT                 NPDRRPYAEVRLLDRVVLGLLDTGASMSAIGGKLAEMVIRQRIPFKRVATT
FT                 AKTADGQKQEVVGRFKTTVQHEEKIREIELYIIPSLSQDLYLGIDFWSAFD
FT                 LLPSTMSIAELTSDAHLLSEAQQAKLQVVINHFPSFAVSGLGKTSLLSHSI
FT                 DVGEAKPVKQRHFPVSPAVEKLLYAEVDRMLKLGVIEESESPWSSPVVLVQ
FT                 KPGKVRLCLDSRKVNAVTKKDAYPLPQIDGILSRLPKANFISSLDLKDAYW
FT                 QIPLDPQSRDKTAFTIPGKPLYQYKVMPFGLSNASQTMTRLMDRVIPAELR
FT                 NEVFVYLDDLLIVSDSFDSHLKVLSSVASRIRSAGLTLNVEKSKFCMKSVK
FT                 YLGHIVGEGVVRTDPDKISAMTNFPLPRSLKAMRRFLGMVGWYRKFISNFA
FT                 SVAAPLTDLLKPRQKFVMTPEGERAFEKLKEMLCSAPVLRSPDFSQPFYIH
FT                 CDASNTGVGGVLVQKSSSGEECPIAFVSKKLNKAQKSYTVSEKECLAAIIC
FT                 VKRFRAYVEGHEFTIITDHASLKWLMSQTDLHSRLARWALKLQSFSFRIEH
FT                 RSGKLNVVPDALSRVNEEEMAAIDASHGLLVDLESVQFKDPEYLELIENVK
FT                 ANSGRLPDLKEADGFVYRKMEHTSGEPMHDNFCWKLWIPKGLVGEVLKNAH
FT                 DDPLASHGGVHKTLERLRRYYYWPRLVKDVKEYIQACDICKMTKPPNCALR
FT                 PPMGMAPESARPFQKLYIDFLGPYPRSRSGNIGIFIILDHYSKFVFLKAVK
FT                 KLTADVIIKYMQQELFHTFGVPESIVSDNGSQFKSEAFQRFLREYKVSHTF
FT                 TAFHSAQANASERVNRSVISAIRSYVRSDQKDWDEQLSSICCALRSAVHSS
FT                 LGTTPYYMVFGQHFISSGATYKLLRALSLLDDRTLAFSKEDSLELVRSKAL
FT                 AVMQNQFEKNEKRYNLRSREVSFSEGQEVYRRNFKQSNFAAGYNAKLGPAF
FT                 VKARIRKKVGQVCYDLEDLQGRYVGRFHAKDIKQ"
XX
SQ   Sequence 5806 BP; 1724 A; 1098 C; 1374 G; 1606 T; 4 other;
     tttataaatt attaaatcct aataataatg ataaattgat tggcgcccam cgtgtkggcc        60
     acatatgcat ttatatgtga ctcacacaca catgtaactt agctgtataa attttaataa       120
     tcaaggagtg ggctatgaca aatttgtggg tacatttaag tcacatagct actgttgctc       180
     cggttttaaa aaaaaaagga aaaaataata ggtttgattt aactcaggtt tgctcggaag       240
     tacaggaaga cggatagcaa agacaatcgt ttaagactgt caagccggcc actacagaca       300
     gcggctgagt taaagcaagt cgacttgtgt atactctaca cagtgcagcc cgagctagtg       360
     cagatcagtc gcataggact agcgagtaca atcgctttca gaagcgaggc attcgaccac       420
     ggatgattag catggcagag gtgcacaaca attccctagt tggacatagg cttttakcat       480
     ttcgcatagg atttactgag gcaaaatatt ttagaagata ctctcaggcc acgattaaca       540
     ggtaaaggca tatgcccaac attcaagtag agagtgcaag tgtttgtcgg ctggagatca       600
     gacggcgaag gtttttgcat agcagctgac cacggcaaac acgtgtcgtt gttgttgtcg       660
     ctaataagcg ataagcagcg cactcaactt ttttttcaat tctcttttgc gctgtttgaa       720
     accttttgct tgcaattaag cgatttattc tgcaggcatt tagctatgct tgctggccag       780
     tattttgata ttgatttttg atttggtttg cgtttattgt tcttgttata tttttacatt       840
     ttaaacaatt tttataatac aatcttctta tatatttaca atcccttatt tacatttaat       900
     caagtttata aataagccaa cattttaatt ctcaagttcg aagtttgaac agccggctcg       960
     atcgaacttg ttgatagcat acaataattc aaacagcaaa ctttaggatt ggaacttgga      1020
     taaaaagtat ctatagaaac ataaatttgt atttttaaat tttaatttta ggtaatttag      1080
     gttgtatttt atttttttta gtttttgttt acgtttattt agtgtttggt gcggctcaca      1140
     gcaagctata tttgtatttg tattggctgc tggtattggt tttgggaaat taattttttc      1200
     ataggaacat aagggtgtat taagaagtca tggacaccga ggcttctggg tcatacaaat      1260
     gcgtgctctg cgacaaaacc ttgtcgtcag accaagtagg acgtgcaaaa tgtggacacg      1320
     agttccacaa ggagtgcttg gaaagccatg ctaaagccaa gggaaactgc ccactttgta      1380
     ggcccaaggg agaaggcgca aagcccaaag tccctggaag cgcggckgga aaaccggcca      1440
     ctagcaccgc cgatgctgag gcgatcggca acattgtgtc ccagcaatta aaaagcttgc      1500
     aacatgattt actgtcgcag ctgtccgatc agatggcccg cttaattcaa gctaatatag      1560
     cagcggagtt tcaagcgttg cctagaccgg taggatctct tcctaactcc agagttcctt      1620
     cagaagtcgg agaaatcgag atagaggcca ggccaatttc agccttttct aattccgatt      1680
     tggccacccg tcccgataaa gttggtcaaa taatcagcag ctggaaattg aggtttaatg      1740
     ggggacaaga tggattgagt gtggataaat tcctatatcg agttgaggca ttaacacacc      1800
     aaacgctcaa gtcgaggttc gatctggttt gcagcaatgc tagtgttttg ttcgatggaa      1860
     aggcccgcga attttattgg cgtttccata agacatccga tagtaccaga tgggatttgc      1920
     tcaccgaggc tttgcgcaaa cagtttcggg atactcgaac agacgtcgac ctaagagaat      1980
     ctattaggga tagaaagcaa aaagagaggg aaaatttcga tgccttttat gatgcgatcg      2040
     tgcagattac tgactgcttg gaagtaccca tgccagaaaa agatttaata gaaacgcttc      2100
     gtaggaactt acgaccggaa atcagacacg aactcctaaa cgttagcata gattctgttc      2160
     aaaagctacg agatatctgt cgacgtaggg aaagtttctt ggaagacgtg aggcgtagct      2220
     atgggtacca gaaggcagtt ccatatcgca aacaggtatc tgaattggta ccagagtatc      2280
     tttcggatga tgcttcggag ttttcggatg cagatttggg ggcagaaata gatgcaattg      2340
     ccttggtttg ctggaattgt aggagagagg ggcatcgtta tcacgattgt gaggagaaaa      2400
     ggaagatatt ttgctatggc tgtggcacac caaataccta caaaccatcg tgtattaaat      2460
     gccaaaaaaa cggcaagcag aacacacgac cccgacatca gccgtgtgtt cctcgaaagc      2520
     cagccaacca agatgtcagc caataattcc tttaagccca ccaaatacat ataaaaagtc      2580
     cgatataaac aattgtcata aaaattcacc aaatacgctg ccagctttaa aaactaaatt      2640
     ggcaagatca gactctcgca acgcaaaaag aatgagagat ttttggcggg cggcgaaaaa      2700
     cataaacgcg ataagataca agaacccaga taggcgtccg tacgcggaag ttcgcctttt      2760
     agatagagta gtactcggtc ttttagacac aggtgcatcc atgagtgcga taggtggaaa      2820
     gttggccgaa atggtcataa ggcaaagaat tccgtttaag agagtggcaa ctacagcaaa      2880
     aacagctgat gggcaaaaac aggaagtggt agggcgtttc aaaacaacag ttcagcatga      2940
     agaaaaaata agagaaatag aattgtatat catcccctca ctgagccagg atttgtattt      3000
     aggaattgac ttttggtctg catttgatct tttgccctcc actatgagca tagcggagtt      3060
     gactagtgat gctcacttgt tgtctgaggc tcagcaagcc aagttgcaag tagttataaa      3120
     tcattttccg tcctttgctg tctcgggttt gggaaaaact agtctgcttt ctcattcgat      3180
     tgatgtggga gaagcaaaac ccgtaaaaca aagacatttt ccggtttcgc cagcggtaga      3240
     aaagttgctt tacgcagaag tcgaccgtat gctcaagctt ggggttattg aagagtcaga      3300
     aagtccctgg tcttcgccag ttgttttagt tcagaagcca ggaaaagtgc gtctgtgcct      3360
     ggatagccga aaggtaaatg ccgtgacgaa gaaagatgca tatcctttgc cccagattga      3420
     tgggattctt agtcgtcttc ccaaagctaa tttcatttcc agcctggatc ttaaagatgc      3480
     ctattggcaa attcctttag atcctcagtc gcgcgacaaa acggcgttta caattcctgg      3540
     aaagccatta taccaatata aagtaatgcc tttcgggctt tcgaatgcct cgcagacaat      3600
     gactaggttg atggatagag tcataccagc tgagctgagg aacgaagttt ttgtatacct      3660
     cgacgatttg ctcattgtat ccgatagttt tgatagtcat ttaaaagttt taagctctgt      3720
     ggcgagtcgc attcgttctg cgggtttaac actgaatgta gagaagagca aattttgtat      3780
     gaaaagtgtc aaatatttgg gccacatagt tggagaagga gtagtgcgaa ctgatccgga      3840
     taaaatatca gcaatgacaa attttccatt gcccagatca ttaaaagcca tgaggaggtt      3900
     tctcggtatg gtcggctggt accggaaatt tatcagcaat ttcgcatctg tagcagcacc      3960
     tctaacggat ctcttaaagc ccagacaaaa atttgtaatg acgccagaag gcgagcgagc      4020
     atttgaaaaa ttaaaagaga tgctttgctc tgcgccagtg ctacgcagcc cagattttag      4080
     tcagcctttt tatattcact gtgatgctag caataccggt gtaggcggcg tgttagtaca      4140
     aaaatcttct agtggcgagg agtgtccaat agctttcgtt tcaaagaagc taaataaagc      4200
     ccaaaagtca tacacggtaa gcgaaaaaga gtgtctggct gccattatat gtgtaaagag      4260
     atttagagcc tatgtcgagg gtcacgaatt taccattatc actgaccacg cgtcgcttaa      4320
     atggttaatg tcgcagacgg atctgcattc taggcttgct aggtgggcat tgaaactgca      4380
     aagttttagt tttaggatcg agcatcgcag cggtaagcta aatgtagtcc cggatgcttt      4440
     atctcgggtt aatgaggagg aaatggcagc tatagacgcc agccatggtt tgctcgttga      4500
     cttagagtct gtacagttta aggatcccga ataccttgaa ttgatcgaaa atgttaaagc      4560
     caactctggc agacttccag atctaaaaga agccgatggt tttgtatatc gtaaaatgga      4620
     gcatacatct ggggagccga tgcatgacaa tttctgctgg aagttatgga tccctaaggg      4680
     cttggtgggc gaagttctca aaaatgctca cgacgatcct ttagcttcgc atggaggagt      4740
     tcacaaaact ttggagaggt taagaaggta ttattattgg ccaagactag tgaaggatgt      4800
     gaaggagtac attcaagcgt gtgatatctg caagatgact aagccgccga attgtgcatt      4860
     gagaccgccc atggggatgg ctccagaatc ggcaagacct tttcaaaaac tttatataga      4920
     ttttttaggc ccgtatcccc gatcgaggag tggaaacatt gggatattta tcatactaga      4980
     tcactatagc aaattcgtat ttctgaaggc tgttaagaaa ctcacagcgg atgtgataat      5040
     taagtacatg cagcaggagc tctttcacac attcggcgtt ccagaaagca tagtatccga      5100
     taatgggtct caattcaagt cagaagcttt ccagaggttt ctgagggagt acaaagtatc      5160
     tcatactttt accgcctttc attcggcgca agctaatgcg tcagagcggg ttaatcgttc      5220
     ggtgatttct gccatacggt cgtatgtgcg aagtgaccaa aaggattggg acgaacaatt      5280
     gagcagtatt tgttgtgcac ttaggtcagc tgttcactct agtttaggta cgaccccata      5340
     ctatatggtt tttgggcagc acttcatctc gtccggtgct acatacaagt tattaagagc      5400
     tctaagcttg ctggatgata gaacattggc attttccaaa gaggattctc tagaacttgt      5460
     acgcagcaaa gcgttagcgg taatgcaaaa ccagttcgag aagaatgaaa agaggtataa      5520
     tttgaggtca agagaagtat cttttagcga aggtcaagaa gtctaccgaa gaaactttaa      5580
     gcaaagcaat ttcgcagctg gatacaatgc gaagttgggc ccagcctttg taaaagcgag      5640
     gataaggaag aaggtgggtc aagtttgtta cgatctggag gatctacaag gacgatatgt      5700
     gggtaggttc catgctaagg atattaagca gtagtttcgc aagcgcggga tttatcatcc      5760
     ttggagtgtc aaaccccaag tctgcttttg atgggggggt aatttc                     5806
//
ID   Gypsy-64_DEl-LTR repbase;    DNA;    INV; 2112 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_DEl-I;
KW   Gypsy-64_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2112
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7044-7044 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 2112 BP; 638 A; 394 C; 502 G; 578 T; 0 other;
     tgtagcgctt gctctgggga aaaaaaagaa aggaaaagat acgtgtatgg ctccatctag        60
     gaatggaatt ttaggtacta ttagcgccat ctagagctcg gccgtaggag ggcttggcag       120
     gggtgaaaag tcgaaaggag agcaacagtg gcatgtgtca actttcccta taattcacca       180
     tagatcgctc cataggttac cgccaacttt ccggcgtggg attcggtctt tcctattttg       240
     gcggccgaag tgttaagttt aaaaggtgca actcgtctaa agaaagtaat cgcgagtgta       300
     gaagttccaa cgccaaggga aaattttgga ttcccggacg tttgtgcagc ggtctggggt       360
     gagttttttt aaagaataaa ggggaaatcc tagcagttcc tcagtggttt ttttgttaaa       420
     tcaggcgagc gcaggggcga gaataccaag gcccaagaag cgaaggcaag gcgaataaaa       480
     ccggcagtcg gcgcaggcgc aaccagcatc tcgagcgcac atcgaaccta gagcaaccgt       540
     cgagccagcg cagccgattt aaaattggaa attacgggca tttagttgtg taaaagttgt       600
     gttaagcggg catacggccc taacttcatc tcttgcgggc gggccgagcg gcgctcgtat       660
     gtaaaagcaa tcaaacaccc acaccgaaaa cgcacaaagc aaatcaggtc aaaactaccg       720
     atgtcttgag ttcgactgtt aaagggagat gttcgatcga gcgcagattt agttacgttt       780
     ctcctctaat tcgcgtatga cggcggcgcg cgatctgctc taaaaagagg cagataaacc       840
     tagaattggc accgcgtttg ggccaagtaa tgctgtaata tcacccggaa agtttggccg       900
     cgaaaacgac ccaagaggga aaggtgatga cctagcccgg ataagtgtca tccagaaatt       960
     aagtgatgat ttttttttag gttaatttat tagttaatta agttcttttc gttaattgtt      1020
     aattatggca gtggcaaggc gaatgtcgat ctagaaaacc ccaaaattgt gtaaagaaaa      1080
     aaagtgcagt gcggtgtgat gaggtgcggc agctaaattt ggtttttttt ctgttccttt      1140
     ttgttttgta tttgaaatct taaccccata gctcatcgca tcccgaggaa agcgctttcg      1200
     tcgatggatt ggattaatta tcggtgagtg agaaaaccca atttgaatct catttcgtac      1260
     aaaaaaaaat atatgatcgg gttcgaaaaa aaaaataaaa agtaaaagta taatgttata      1320
     acctcaaacg acggtagaga aggagcaaag gaaaaaatga gtgaaatcca aatcactcta      1380
     aagtagagga aaaaaaaact caattttggt tccgactcaa tcgcacggga taattgttcg      1440
     gcagctgtaa ttttttattc gtctttaatt taatttctat tttacgcgga ttgaatttcc      1500
     ccttcccatt ggcctaaatt ttgattttta ttaagaaaaa gaaagaaata ttacaagtca      1560
     atttacgcat ttctcacact taatgtttac acactctaat ttggatatta ctaagttata      1620
     tgtcgtattt atacatgtcc ataagtaaat ctatgattat gtttagtgtt aataatgttt      1680
     ttagctggta ataaattttt tataatgttc taagaaaatt tgagattggc cgcagctagc      1740
     gaaatgcaga tgtagggtag cgcttaagag aaggggtcgc tcaggctatt gagcaggtgg      1800
     atggagcgac caaaggaagg gtgggctaga ctggacctcc acaacatctg agggggcaaa      1860
     aaggggaatt cagcagcatt agggtcattt ttcttttcca gcagtaatag ttacatgtgt      1920
     gtctctatcg ttccggtttg ttgtcgttgc acgcgatatt aaggtatcaa tattgatagg      1980
     caaaagtgaa cacaagcaag accaccacag ccttagccga cgagccgcca gccggacaac      2040
     tattccgcgt gcgcttgtgt ttcaccttca acatctcgcc tgtgataatt tataatgaag      2100
     ctacccgtta ca                                                          2112
//
ID   Gypsy-64_DWil-I repbase;    DNA;    INV; 4230 BP.
XX
AC   .
XX
DT   14-FEB-2012 (Rel. 17.09, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_DWil_;
KW   Gypsy-64_DWil-LTR; Gypsy-64_DWil-I.
XX
NM   Gypsy-64_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4230
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1897-1897 (2012).
XX
RN   [3]
RP   1-4230
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-DEC-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..4212
FT                 /product="Gypsy-64_DWil-I_1p"
FT                 /translation="MRGTEVQTKRSRIPIVTVRQPYYTRSKAKEAVQRMAD
FT                 EAGGVLKLDEVASGGEVSATGIQAMADNTKILQELVQLLALKVGADEQNRN
FT                 SGTIAAESFEKIIPDFDGETIPVKHWFRNFELNAEAYGLNIKQMYVQARAK
FT                 MTKTAKLFLEAIXVCQYSELRMTLENEFGQRSKCSAEIHAELRDRKKHNQE
FT                 SFHEYLLQMRKLAAVGDVDVQSVIRYIVDGLQLKSDFRYTLYGCKSFQELQ
FT                 EQYAVYERVAERSARPFLANETNQKRSPHVPNKQKHCFNCGSVEHFRKDCD
FT                 AATKCFRCNKEGHMAKNCPGSAADIQVVRDATRVKRIAVNGVDVECLVDTG
FT                 ADVSLVTKSVFNNIPGVMMKKWTSRLRGLGNNMTRPVGCFEAEVIVDQETT
FT                 SHKFVVIADRDIQYDALLGFDFISKFDLSSSAGGYKFSFPQGEKTCEEINQ
FT                 ISIFNISNANDEIDVPPQYAKDVKRLIQNYKLAEAVAEVPVKLRIVPDGEI
FT                 TPFRQSPSRLAIAEEIDVEKQIDEWLAAGIIRPSSSNYASRLVLVNKKDGT
FT                 RRICVDFRKLNLMVLKDCFPVPVIDDVLDKLQNAKLFTVMDLENGFFHVPI
FT                 EEESKKYTAFITKTGLYEFNRAPFGFRNSPAVFIRYVNHIFQELVNNDVLD
FT                 LYMDDIIIHAETPQECFDKMSRVLEKAGSFGLKIKWRKCHFMQTKIYFLGH
FT                 NIENGIVWPGQEKTAAVSRFSMPKNVRAVQGFLGLTGFFRKFILNYSQIAR
FT                 PLTDLLRKNVSFKMGDSQMKAFQLLKNALTTEPVLKLYVRGAKTELHTDAS
FT                 KDGYGAALLQWSEGKLHPVHFWSQKSSESESRQHSYILEAKAVYLAVKKFR
FT                 HYLLGLPFKLVTDCSAFKQTLKKVDVPRSVTQWIIYLQDFDYEVEHRPGER
FT                 LKHVDCLSRNPCIMVASLEITARIKAAQAKDDTIKAIVEILGSRPFEGYKM
FT                 KGGLLYREENGNDLLVVPKQMEKEVIMDAHNVGHFAVQKTLHAVYQSYWIS
FT                 HLEQKVQQIVNNCVKCIIFNKKLGKKEGFLNYVDKGDQPLHTLHIDHLGPM
FT                 DATTKQYKYILAMVDAFTKFIWLFPTKTTSCEEALKKIDIWSQIFGNPVRI
FT                 VSDRGSAFTANLFAEHMRTNGIEHVWTTTGVPRGNGQVERVNRTILSVIAK
FT                 ISESDPTKWFKAVPEVQRAVNSQTHTTTKKSPFELMFGVKMNNKPADRLIQ
FT                 LLKEEMYQRFDEERQLMRQDAKAEIIQAQKSYKKHFDSKRKPEAGYQVGDL
FT                 VAIRRTQFVAGKKLSSEYLGPYEVTQVKRNGRYDVRKAADVEGPTNTSTSC
FT                 DYMKMWRYIKDNEDDLSSGTDE"
XX
SQ   Sequence 4230 BP; 1315 A; 795 C; 1068 G; 1051 T; 1 other;
     tttgggggct cgtcctaatt tggaaagtgc aagttatttg gagttgtccg gaggtgtctc        60
     aaatttggcc agaggagtct caaaaatttt gccgcgaatt tgctgagtga cgctgctgag       120
     agggacggca ctacaaacac agcgctctgg agagagggag acaacagaac tactaataaa       180
     gttttgccgc gaatttgatg agtgacgctg atgagaggga cggaagtaca aacaaagcgt       240
     tctagaatac caatagtgac agtgaggcaa ccatactaca ccagatcgaa agcaaaggag       300
     gcagttcaga gaatggcaga cgaagcgggt ggcgtgttga agctggatga agttgcatct       360
     ggaggcgaag ttagtgctac tggaattcag gccatggctg ataacaccaa aattctgcag       420
     gaactggtgc agttgctcgc tttgaaagtg ggagcagacg agcagaatag aaacagtggt       480
     acaatcgcag cggaaagctt tgagaaaatc atccctgatt ttgatggcga aacaattccg       540
     gtaaaacatt ggtttcggaa tttcgaatta aatgctgagg catatggcct aaatataaag       600
     cagatgtatg tacaagcacg tgccaaaatg accaaaacgg caaagctgtt tttggaggcc       660
     atacakgtgt gccaatattc ggagctacgg atgacgctgg agaatgaatt tggtcaacga       720
     agcaaatgca gcgccgagat tcacgcagag ctacgggatc ggaaaaagca caatcaggag       780
     tcatttcacg agtatcttct tcagatgaga aagctggcag cggttggtga cgttgatgtg       840
     cagtccgtaa tccgctacat tgtcgacggc ttgcagttga aaagcgactt tagatatact       900
     ctctatggtt gcaaatcctt tcaagagctt caggagcagt atgctgtgta tgagcgcgtt       960
     gccgaaagat cggcgagacc ttttttggcc aacgagacga atcagaagag atcgcctcat      1020
     gtcccaaata agcagaagca ctgctttaat tgtggatccg ttgagcattt tcgtaaagat      1080
     tgcgatgctg caacgaaatg ctttcggtgc aataaagagg gacatatggc gaaaaattgt      1140
     cctggttcag ctgcagacat tcaggttgtt cgtgatgcta cacgtgtgaa gaggatagct      1200
     gtcaatggag tcgatgtgga gtgcttggtg gatacgggag ccgatgtatc cctggtgacc      1260
     aagtcggtat tcaacaatat tccaggcgtc atgatgaaga aatggacttc gaggctgcga      1320
     ggtctgggaa acaatatgac acgcccagtt ggatgctttg aagcagaggt tatcgttgat      1380
     caagagacga cttcgcacaa atttgttgtt attgcggata gagacattca atacgacgcg      1440
     ctgctcggat ttgatttcat atctaaattc gatctttcat catcggcagg gggatacaag      1500
     ttttctttcc cgcaggggga gaaaacttgt gaggagataa accagataag tattttcaac      1560
     attagtaatg caaatgatga aatcgatgtt cctccacagt atgcaaaaga tgttaaacgg      1620
     ctgattcaga actacaagtt ggcagaagct gtagcagaag tacctgtcaa gctaagaata      1680
     gttcccgatg gagaaataac tccttttcgc cagtctccaa gccgattggc aattgctgaa      1740
     gaaatcgatg tagagaagca gatcgatgaa tggttagcag ccggaatcat acgtccgtct      1800
     tcatcgaact acgctagtcg cctggtacta gtaaacaaga aggatggtac gcggcgtatc      1860
     tgcgttgatt ttcgtaagct gaacctaatg gtcttaaagg actgttttcc tgttccggtg      1920
     atcgatgatg tgctggataa attgcagaac gccaagttgt ttacggtgat ggatttggag      1980
     aacggcttct tccatgtccc cattgaagag gagagtaaaa aatacactgc ttttatcacg      2040
     aaaacgggtc tgtacgaatt caacagagcc ccgttcggat tccgcaattc gccagccgtt      2100
     tttattcgct atgtaaatca tatatttcaa gagttggtaa acaatgatgt tctcgattta      2160
     tatatggacg acataattat tcacgctgag actccacaag agtgctttga caaaatgtca      2220
     cgcgttttgg agaaggctgg atcatttgga ttgaagatta aatggcggaa atgtcacttt      2280
     atgcagacta agatatactt cttgggtcac aacatagaaa atggaattgt gtggcctgga      2340
     caagaaaaaa cggcggccgt cagcaggttt tcgatgccaa aaaacgtcag ggcagtgcaa      2400
     ggatttttgg gattaactgg atttttcagg aaatttatct taaattattc ccaaatcgca      2460
     cgcccattaa ccgacctttt gcggaagaat gttagcttca aaatgggcga ttctcagatg      2520
     aaagcatttc aattactcaa gaatgcattg actacagagc ctgtgctgaa gctatacgtc      2580
     agaggagcta agactgagtt acatacggat gcatcaaagg atggatacgg agcggcactc      2640
     ttgcaatggt cagaaggcaa actgcatcca gttcacttct ggagccaaaa atcgtctgaa      2700
     tcagagtcac ggcaacacag ttatattctt gaagcgaagg ccgtatattt agcagtaaag      2760
     aaattcaggc actacctgct gggcttgcca tttaagttgg taacggattg ctctgcattc      2820
     aaacaaacgc tgaagaaggt ggatgtaccg agatcagtaa cacagtggat aatatatctt      2880
     caagactttg actacgaagt agaacatcga ccaggggaaa ggctaaagca tgttgactgc      2940
     ctaagtcgca atccttgtat aatggtggct tctctggaga ttacagcacg tataaaagca      3000
     gcacaagcta aagatgatac tattaaagcc attgtggaga ttttaggcag ccgtccattt      3060
     gagggataca agatgaaagg tggacttctt tacagggaag aaaacggtaa cgatctcctt      3120
     gttgttccga agcagatgga aaaggaggtg attatggacg ctcataatgt tggtcacttc      3180
     gccgtgcaaa aaacccttca tgctgtgtat caatcttatt ggatttccca tctcgaacaa      3240
     aaggttcagc agattgtaaa taactgtgta aaatgtataa tttttaacaa aaaactgggc      3300
     aagaaagagg gtttcctaaa ttatgttgat aaaggagacc aaccacttca tacgttgcat      3360
     attgaccact taggccccat ggacgccact acgaagcagt ataaatacat cttggcgatg      3420
     gttgatgctt ttacaaagtt tatttggctg tttccgacca aaactacaag ctgcgaggaa      3480
     gcgctaaaaa aaatagatat atggtcacaa atcttcggaa atcctgtgcg tatagtttcc      3540
     gacagaggct cagcatttac ggccaacttg tttgcggagc atatgagaac gaatggcata      3600
     gagcatgtat ggaccacaac gggagttcct cgtggaaatg gacaggtgga gagagtaaat      3660
     cgaacaattt tgtcggttat tgcaaagatt tccgaaagcg atccaaccaa gtggtttaag      3720
     gcagttccag aagtacagag agctgtaaat tctcagacgc atacaacgac aaaaaaatcg      3780
     ccgttcgagc tcatgtttgg tgtgaagatg aacaacaaac cagcagaccg tttaatacag      3840
     ctacttaaag aagagatgta ccaacgcttt gatgaagaac gccaactaat gaggcaggac      3900
     gcgaaagctg aaattataca agcgcagaag tcttataaga agcactttga cagtaaaaga      3960
     aagccagagg ccggatatca ggttggagac ttagtcgcca tacgcaggac gcagtttgtc      4020
     gcaggaaaaa aactgtccag cgaatattta gggccttatg aggtgacgca agtaaagagg      4080
     aatggtagat acgacgtaag gaaagcagct gatgtcgaag ggcctacaaa tacttctacc      4140
     agttgcgact atatgaaaat gtggcgctat attaaggaca acgaagacga tttatcatct      4200
     gggacagatg aatgatcagg aatggccgaa                                       4230
//
ID   Gypsy-64_DWil-LTR repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   15-FEB-2012 (Rel. 17.09, Created)
DT   15-FEB-2012 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_DWil_;
KW   Gypsy-64_DWil-I; Gypsy-64_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-292
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1898-1898 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 292 BP; 115 A; 50 C; 73 G; 52 T; 2 other;
     tgatatacat gtaaggtacg atggagagtt acagaggctt aacagcagca agcggacaga        60
     tgatcgtnaa cagcagagtt tagcagcgga gcaacagaga gtacagcaga cagcagaaga       120
     gaagagcacg agagagagac agttgaagtt gcagagtacg gcggagcagc agtgagagaa       180
     aaagcaagcg aaccgaagca gccgattaag acttaaatat ttgtaacttt tcaaaactac       240
     nttaaatcaa attaataaat aaacttagtt gagtaagccc actcaactca ca               292
//
ID   Gypsy-64_LMi-I repbase;    DNA;    INV; 8879 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-64_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8879
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(839..1261,1188..3374,3365..5620)
FT                 /product="Gypsy-64_LMi-I_1p"
FT                 /translation="MVRRTCRSEMEPTNRMMTRSQDNLNVRNEIDRECYSE
FT                 PELGEHAEDRPLPQSIGNFNPQPSTSRGHEFTTESPRVQXLNPNNHTAXMV
FT                 DPFALILQKLEEQARQTQEQNKKLENRLTTQEQKNRQTQTESANQTCSRKT
FT                 NTQHKNKKIDKHKLNQQIKLAQEKQTHELTKQIQLVREEQTKKLDEHCRQI
FT                 NEQFKRQEETINELRAETRKNYEFLKHRLDGQCEQNEHLKQELHNTTTNLK
FT                 AEIEERDTRRDRITNHLIAEFKNLRTDVEGFKTSLEEVPQKVEELQTDVNK
FT                 IKDFQNTAQPTIEELNSKFQNLQVNANETINNFLHESSKRINSNVQDWLDN
FT                 QATVIKQKIENELQSNLNKMSNNNENNSNNCNYNQASPPHEANTSEHVRPE
FT                 HSSNGQNFSKGIPVWTRKTQHCQPNIRTEPDPHXYGVPEPEAESNISQPPT
FT                 GXRTTKFHCANSNRCDXPRSPVACNYREPCNHGCTNFTCSGRDPKILKNRH
FT                 FQTFSSEKDDTHPIIFIRSFRNVFPYNWDEYSKLQFIVSHIVGEAALWANE
FT                 IIETCESTEEFEQLFTKRYFSRNKQERLRNEIYYPEFYNPKKGTLRKYFEK
FT                 YINKTRYWDNPIPTREVLKILKGRLPIELREKLMYVPDHDVETFLAQVDIL
FT                 DQIEDDKKNLRRNLGFSVYNNNNNNNNNGNNNNNGNENSTNYHNGNRNGNS
FT                 GQNFSNRNWRQNGQPNGKHKNHNNNGNRNSSNSNNNNHNSNFNNFQNPRNQ
FT                 NFQSQNNGQQFNNNTKSRKRTYDGNFRNINPPNQYNWANWQWYNNPPPNWI
FT                 PQTNNLPTGPPLNVPSSGHQQQNTSQPRNQPTMSSQHTTRQNQNSNQQVRL
FT                 IEVIEDESNPITTNPSNSVKLVPTCFCLPGPVGTNKEGPDTIQINVLRYND
FT                 GQNILDDLNEEPSNICKKKEPLVQAVISAKIYDVPVDIVIDTGSSISAISE
FT                 NFYKLISKNVSVPTLPVQSCTVTGALGLSFQRVKTQCWVAVNVEDDVLNDA
FT                 YLVIPKLTTPCIWGLNILCGRDAEIDLSLGYLVISGSSGRIKLSLTGVENE
FT                 QSMKCCNLKINYMAPTACYLEEDILANQFISEESVTRIHKTVLEKVSESGY
FT                 LTEQQQDDLASLLVKYIEVFDEKPGIIKGYVYHMNVYPHKVYCRSSYSVPW
FT                 TKQEKVKAEIKKMLKWNIIEPSHSEYCSPLLAIYKADNSVRLVLDAREINK
FT                 IIVPVRTHPEKLDELLQKFHGMQFLSSIDLRSSYWQILLDEESRKYTAFNF
FT                 AGRSYHFCVMPFGLSVSGGVFIEALDTVLKPDLIDKVTVYVDDLLIATKTW
FT                 EEHLELLEAVLARFQEYGVTANLLKSKFARQELRFLGHIISPTGILPDKGK
FT                 ISAIKNFPYPTTKKQLKSFIGLISFFRKYLPNNLINNDVLFKLLRKNVPWN
FT                 WTKECCFVFDAIKKALVNANILYHPDMTKEFCIATDASFSGLGAFLFQWAE
FT                 VDGKQEIRIISFASRILSNTERSYHTTELEVLAVKWALEKFNYFIFGRKVK
FT                 VYCDHQAVTFLLSCKLLHNRLARWAMILQNYDLEIIHIKGKDNVIADCLSR
FT                 LPEGLSEYPNIAEQTGTYKIMLIKDSPFCKDYLNVSKILLHYRMLTHIGKQ
FT                 SSRN"
XX
SQ   Sequence 8879 BP; 3227 A; 1464 C; 1622 G; 2556 T; 10 other;
     aaatgtcgcc ctagaacgtg gggctcgact aaataagaag aaaaattaag aagactgaag        60
     aaacggacat taagaaatta taccgaaaga tcgacgaaga atctacttca gaagacgact       120
     aagaatccaa gatcaaggaa gagacggaaa acccaatcaa gattgttgaa aggaagaact       180
     ggatgaaata gtacaatttt tggacaatat taacaattgt tgctgtgacg cgtggacttg       240
     ttgcagaatc gtaaaaaggt gattatcttt caaaaacttt taattactgt gagatattgt       300
     gaaataatta attatcagtg tgttttatgt katagtatgt atatgtacta atctgataat       360
     ttttctgttt catgaccaac ttattataat aatatttatg cttccgagca ttacatggaa       420
     taattctgtc caaagtaaga aattgtgacc aaaaaaggga tatttatgtt ctaccgacta       480
     cggaagtata aggtaaggac atcattttta ctccatattt tgccttgcgg aacgaagtac       540
     ttttaattac atctgtgttg tgcacaatag attgattgac agacagaatt aagtttgatc       600
     taaagaataa agattaattg aaaactaata cagatcccca caaggcaaaa tatattttgt       660
     attgtagctt gtaacagtgt atggtagtac gtagttttat ttgtgatttt ctgaaagtgt       720
     ttaggttaag attgtgtctg ataggatttt cctgaatttg agtgtgtagg aattgtaaac       780
     ttttaaattg tgtgatagag atagtgttag gtactgaaca gaatttaact ttgatagtat       840
     ggttaggcgt acatgcaggt cagaaatgga acccacaaac cgaatgatga ctcgttcaca       900
     agacaatttg aacgtgagga atgaaataga ccgggaatgt tattctgaac cagaattagg       960
     tgaacatgcc gaggataggc cgttacctca atctattgga aatttcaatc cacaaccaag      1020
     cacatcgcga ggtcacgagt ttacaacaga atctccgcga gtgcaaawtt tgaatccgaa      1080
     taaccatacc gccamcatgg tagatccatt tgcattgatt ttgcaaaaat tagaagaaca      1140
     ggctagacaa acacaagaac aaaataaaaa attagagaac aggctaacaa cacaagaaca      1200
     aaaaaataga caaacacaaa ctgaatcagc aaatcaaact tgctcaagaa aaacaaacac      1260
     atgaactgac taaacagata caacttgttc gggaagaaca gacaaaaaag ctagacgaac      1320
     actgcagaca aataaatgaa caattcaaac gccaggaaga aaccattaac gaactccggg      1380
     cagaaactcg taaaaattat gaattcttaa aacatcggtt ggatggacag tgcgaacaga      1440
     atgaacattt aaaacaagaa ctacacaata ccaccactaa cctaaaagcc gaaattgaag      1500
     agcgagatac acgtcgcgac agaataacta atcacttaat agcggaattt aaaaacctac      1560
     gaacagacgt agaaggattt aaaacatctt tagaagaagt tccccaaaag gtagaagaat      1620
     tacaaactga tgtgaataaa attaaagatt tccagaacac agctcaacct acgatcgagg      1680
     aactaaatag taaattccag aacctccaag taaatgctaa tgagacaata aataatttcc      1740
     tacacgaatc gtcaaaacga attaacagta atgtacagga ctggctcgat aatcaggcta      1800
     ccgtcataaa acaaaaaatt gaaaatgaac tgcaatcaaa tttaaacaaa atgtcaaata      1860
     ataatgaaaa taatagcaat aactgtaatt ataatcaagc tagccctcca catgaagcaa      1920
     atacttcgga gcatgttcgt ccagaacatt ccagcaacgg gcaaaatttt agtaaaggta      1980
     tacccgtctg gacacggaaa acacaacatt gccaacctaa catacgcacg gaaccggatc      2040
     ctcatawtta tggagttccg gagcccgaag cagaaagtaa tatttctcaa ccgcctactg      2100
     gaamcagaac tacgaagttt cattgcgcga attctaacag atgcgatwtg cctcgaagtc      2160
     cggttgcatg taattataga gagccatgta accatggatg cacaaatttt acatgctccg      2220
     gmagagatcc aaaaatatta aagaatcgac attttcagac tttctcgtca gaaaaggacg      2280
     atacacatcc tattattttt attcgaagct tccgaaatgt attcccgtac aactgggatg      2340
     aatacagtaa actgcaattt attgtgtcac acatcgtagg cgaggccgcg ctgtgggcga      2400
     acgaaatcat agaaacttgt gaatctaccg aggaatttga acaattattt accaaaagat      2460
     atttttcaag aaacaaacaa gaacgtttgc gaaatgaaat ttactaccct gaattttata      2520
     acccgaagaa aggaacactt cggaaatatt ttgaaaaata cattaataaa acccgctatt      2580
     gggataaccc aatacctaca cgtgaagttt taaagatttt aaaaggaaga cttccaatcg      2640
     aacttcgaga aaaactgatg tatgtacccg accatgacgt agaaaccttt ctagcacaag      2700
     tagatatact ggaccaaatt gaagacgaca aaaagaatct gcgtcgaaat ttgggcttca      2760
     gtgtctacaa taacaataat aataataata ataacggtaa caacaacaac aatggaaatg      2820
     aaaatagtac gaattaccac aatggaaata gaaatggaaa cagtggtcaa aattttagta      2880
     accgtaattg gcgccagaat ggccaaccaa acgggaaaca taaaaatcac aataataacg      2940
     gaaaccgtaa ttcttcaaac tcgaataata ataaccacaa cagtaatttc aacaactttc      3000
     aaaacccacg aaatcaaaac tttcaatcgc aaaataatgg acagcagttt aataacaata      3060
     ccaaatcacg aaaacggaca tatgatggaa actttcgaaa tataaatcca ccgaatcagt      3120
     acaattgggc aaactggcaa tggtataata atcctccacc aaactggata ccacagacaa      3180
     acaatttacc tacaggacca ccattaaatg taccttcgag tggacatcaa caacagaaca      3240
     cttcacaacc gagaaatcaa ccgacgatgt cttctcaaca cactacaaga cagaaccaaa      3300
     actctaatca gcaagtaaga ttaatagaag ttatagaaga tgaatccaat ccgattacaa      3360
     ctaatccgtc aaactagtgc cgacatgttt ttgccttcct ggacctgtcg gtacgaataa      3420
     ggaaggaccg gataccattc agataaacgt actkagatac aatgatggcc agaatatact      3480
     tgatgattta aatgaggaac catcaaacat atgtaagaaa aaggaacctc ttgttcaagc      3540
     tgtaattagt gccaagattt atgatgtacc tgtggatata gtgattgata caggatcttc      3600
     aatctctgca ataagtgaaa atttctataa attaatttca aagaatgtat ctgttcccac      3660
     acttcctgta caatcttgta cggtgactgg agcattaggt ttaagttttc aaagagtaaa      3720
     gactcaatgc tgggtggcag taaatgtaga ggatgatgta cttaatgacg catacctcgt      3780
     aattcctaaa ctgaccacgc catgcatttg gggattaaat attttatgtg ggagggatgc      3840
     agaaatcgac ctctctttag gttatttagt tataagtggc tcaagtggcc ggataaagtt      3900
     gtctttaact ggtgtggaga acgaacaatc tatgaaatgc tgtaatttga agattaatta      3960
     tatggctcct acagcttgct atttggagga agatattctt gctaaccaat ttattagtga      4020
     agaatcagtg actagaatac ataaaactgt tttagaaaaa gtatctgaat ctggttacct      4080
     cacagagcag caacaagatg atctagcctc attgttagtg aagtatattg aagtatttga      4140
     tgaaaaacct ggtataatta aaggatatgt ttaccacatg aatgtatatc cgcacaaagt      4200
     ttattgtagg tcttcctatt cggtaccgtg gacaaaacag gaaaaggtaa aggcagaaat      4260
     aaagaaaatg ttaaaatgga atatcataga accttctcat tcagaatatt gcagtcctct      4320
     tttggcaatt tataaggcag ataatagcgt tcgtcttgta ctagatgcaa gagaaataaa      4380
     taaaataatt gttcctgtaa gaacccatcc tgaaaagttg gatgaacttc tacagaaatt      4440
     tcatggaatg cagtttttat cttcaatcga tttaaggtca agctattggc agattttatt      4500
     agatgaagaa tcaaggaaat atactgcttt caattttgct ggacgwtcat atcatttctg      4560
     tgttatgcct tttggattat ctgttagtgg tggagttttt attgaagctt tagacactgt      4620
     attaaaacca gatttaattg acaaagtaac tgtatatgtg gacgacttac ttattgctac      4680
     taagacatgg gaagaacatt tagaattatt agaagcagtt ttagcacgtt ttcaagaata      4740
     tggtgtaaca gcaaatttgc taaagtccaa gtttgccaga caagaactaa gattcttggg      4800
     acatattatc tcaccaacag gtatactacc tgataaaggc aaaataagtg ccataaagaa      4860
     ttttccttat ccaaccacca agaaacaatt aaaatcattt attggtttaa tatcattttt      4920
     tcgaaagtat ttacctaaca atttaataaa taatgatgtc ttgtttaaac tactccgaaa      4980
     gaatgttcca tggaattgga ctaaggagtg ttgctttgta ttcgatgcaa tcaagaaggc      5040
     tttagtgaat gcaaacattt tgtaccatcc tgatatgaca aaggaattct gtatagctac      5100
     ggatgcaagt ttttcaggtc taggagcatt tttgttccaa tgggcagaag tagatggaaa      5160
     gcaagaaatc aggattataa gctttgcaag taggatctta agtaatactg aacgatctta      5220
     ccacaccacc gaacttgaag tactagccgt gaagtgggca ttggaaaaat ttaactattt      5280
     tatttttgga agaaaagtta aagtctactg tgatcatcag gcagtaacgt ttttattatc      5340
     gtgcaaatta ttacataaca gattagctcg atgggcaatg atactgcaga actatgatct      5400
     ggaaataatc cacataaaag gaaaggataa tgtaatagcc gactgtcttt cgagattacc      5460
     tgaaggttta tctgaatatc cgaatatagc agagcagaca ggaacctaca aaatcatgct      5520
     aattaaagat tctccatttt gtaaggatta tcttaacgtt tcaaaaatat tgctgcatta      5580
     caggatgctg acccacattg gcaagcagtc aagcaggaat tagaatcaca aagattagca      5640
     aatgttgatg attatcacct taataacgac atactgtatt ataaagataa ttacagaact      5700
     ggcaattggc gagtttgttt accaaaatcc catctaaatc aaattatttg gtttacacac      5760
     tttgtctggg gtcattttgg accagataaa tgtgctgaaa aattcttaga cattgttatt      5820
     atcctaatct gaaaagaata gcatctaaat tattacgttc ttgtgtcatt tgtcagaaag      5880
     ccaaaccagt atcctacagc agaaaaactt atctacatcc aattattcca agcaaaccat      5940
     tagaattagt gtcttgtgat ttatgtggat ctctacctac tggaaggggt ggaatgaagc      6000
     atatgttggc tatttatgat gttttttcaa aacatgtaaa gttgtaccca ctaaaatcag      6060
     caactacttc ggcagtaatt agaaatttca gaacttattt ggctcaagtg ggcaaaccat      6120
     caattatagt gtctgataat gctagctact tcactagtaa gaaatggagt gatttcttgc      6180
     aagaacaaaa tatacaaaaa gttcttatat ctaaatacca ccctgaagct tcgcctgtgg      6240
     aaaggatttt tcgtgacttt aatcgcttta ttagaactta tgcttcaaat cgccacacca      6300
     aatgggtgga gtatattaag ttatttgaaa acattcacaa taatcttccg cattctctac      6360
     aaagcatacg ccagatgaaa ttatgtttga tgaatctgag gataatttat ggtataatag      6420
     cattcctaaa gtgaataata atgtatatga ccgacaagct atcataagta atgttttgcg      6480
     tgctttagaa gtgagtgcag caaaacgtaa aaagaaattt gacagaaata tctccaagac      6540
     tgtagactat caaataggtg atctcatatt actgagaacg catccctatt cttgtgccat      6600
     aaaaaggaaa aataagaagt ggtcgttatt gtacgaagga ccttatgaaa ttgtcaatat      6660
     accgcatgaa aacagctact ggctagtaaa ccctagaacc agaatagcta agggactgta      6720
     ttctataagg acttgaaaaa gttttattaa cttgtattaa tgtgtactgt atatatgtgt      6780
     tatatgctat atgactttca tctgtatata atgtgttwta gcctttaagt gatatatgta      6840
     ggtcataagt gatgtttatg tatatgtgtg atgatttaca atacgtcgca atgacttgta      6900
     aaagattcca tacgcaagac aaaacgagta aaaatagagt atgctactca ggagtagtct      6960
     tgttacaatg ttggtagcga cattgcatca tgggaaagat agacagcaat agtgaaaatt      7020
     ttacatctga aggtagtgtt gtcagagttg gcaatactgt tgcatcatgg gagatagacg      7080
     gtgcaacgat taaactttat tatgcggcgc acaaagactg tgtccaaaaa gttaacctta      7140
     cagatatatt gactgttgaa aaagtgtgct ttaagaaaat acaatgttat tctctcacag      7200
     acggaataaa tatgaatgga tttaagattc tgagactgat attcccttac acgacatctg      7260
     aactgaaatt ttatcgaaac tacgatgtgt agtaattgat ttaggcttag atgtaagagt      7320
     gtctttttct ataatgttat gattctattt cagcttagtg taagattttt attcttgtgt      7380
     aatgtaaaat gtttctaagt acaatgatat ttaaagcagt tttctgattg attaattaat      7440
     aaatgacatt gtttgaatgg agcttcactc cgatataatt tacaaagttt taagatttaa      7500
     gcagccttca gctgcagata actttcttga aaaacaatat aagattttat taatgtaatt      7560
     aataaatcat tacttagaat tatgttgagt gcacaaacaa catcagatgt aattagaagg      7620
     cacagttcga actttcacaa gcaatttgag gcttattttg tcgagactaa ccgggagatt      7680
     tccgcgggaa attaaagttc agtaattcgc gaaatttttt tatgcatttg caacacaagg      7740
     caaaatgtag taaaaatgta tgtccaatac atacttgacc tcatccagat gttaatattt      7800
     tgcaatgatt taaataatta ataatagtgt tcagttctgt ttattttatg tctacatgtg      7860
     gtgacagata agactgtgct acagcagcaa tctgcaaccc gtgtgatgac ttaaatcgaa      7920
     taaactgtga gcaacagtgt tcgatagtgc ttgcgtgttg ataaaactgt caatatacag      7980
     cgatcagcac aaactaaaca agtacaaatt tatttaagtg ggccaattaa ccactaaata      8040
     gtaaaatata caagccatta ttcaggactt aatgcgtgaa atgaaactct gaaatattaa      8100
     cagctcattg tgtgtgtagt gcagaagtgt cagtgccata tcgaactgta accagtcgat      8160
     tcggacactc gaatacctgt tactcgctca caaaagactg atgatattga accaagaagt      8220
     aaaaggacaa agactgtgca ctcaatgtta aaatattaat gaacccagtg acttctttgc      8280
     ttccaggaag aattatcatt agagatactc taatattttg tacaatgttt gttgcatgtt      8340
     catgtgaact ttgatgtctt tcgggagcat gttggaccct ggggggcctg tgttcctgtt      8400
     gaagaccgga ccatcgtcat cacatcaaga tgtcgtgtcc atcgatcgac aaaattatat      8460
     ttctgagact acaattacac tacttacacg tagtagtagg agcatatgtc gctcaaatta      8520
     caccacaaca tcataataaa ggaccaagag tcccattaca cacacgcagg atgttctttt      8580
     tcagctatga aatgaaattg aaataatttg atatgaaata attttatttt aaatgatttc      8640
     atgaaataat gctaaaggat tgtgacatat gtaacttatt aattgttttt aacattgtgt      8700
     actacatata gatcaaagtc atagaattaa gttagatttt atgaggtcaa gtatacaaaa      8760
     gatcaaaatt tcttgtaaaa tcataggaac caaaagatac tattgttatg tctcgcgatg      8820
     ttgtgttatg gtctagatgg agtttgttaa caagtgaaca aacaccatct gggggcctg       8879
//
ID   Gypsy-64_LMi-LTR repbase;    DNA;    INV; 1184 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1184
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 1184 BP; 422 A; 211 C; 187 G; 364 T; 0 other;
     tgtaacacca catcgtgacc atagcattag aatcacggta ttccaacatt tttcatcgtt        60
     acgtaatttt aatatttgtt aagaggcaga attttctcat ttttcaaaat ttttagtaaa       120
     ttcaaattat atcagcgtaa ttcagagtaa tagtatccag ggaatactta ggtcaaaaca       180
     cctcgtatat cagagatcat ttgtcagatt gctattataa atagtacccg cagttgagtt       240
     actctctctc tctcagctct ctatgtgttt agctctcatg tgcttagctt ctctatgtgc       300
     ttagctctct atgtgaagct ctcagtgctt agctaaaata ttatacgcgg tttaattcca       360
     agataggaaa aaacccgaaa aagtatttaa actttaatat aaactttcat atcgtgatca       420
     tacgcgaaag cgaacattat ctttggactt tgatcgggat aggctaggac ggaagaatta       480
     gaaacttctg cctcctaata aactgatgaa cattccagag agattaatac aacaaacttt       540
     gacgaaaata atcacgaatt gtgaacttat aaagtgtgta ctgtgaaagt gttgtgatgt       600
     aactattgat ttcagaatag agaatctatg aacctaaaaa gtcttaaaca gttattcgag       660
     tatttagttc cctaatattg tcccagatat tctaaaagtg aaggaatata tctaacagtt       720
     tggtcaggag aaacttatgg tgaaattttc taaagaataa ttcataagga aaaggatcag       780
     gcaaaaacat atctttgtga tgggcgtcaa attatctgaa ctaccgggac tcaatgattc       840
     aaatttttat tctttggttt attaaatatc agcccctgag aaacggattt tcatgctcaa       900
     acattaaaaa ggtctttaat ttaatgaaat ccagaaccaa tatttacagt gaaaaattca       960
     acaaagatat aaattttatt aactgcaaag aagtaccagg tctaccaact taattttcat      1020
     actgaggtga caaatagaat tttgaaccta tacatccaat acaactgtga aaatcaagac      1080
     gtaatctaca gcttaaaagt cgcaagctaa aaccctaata taaaacgaag tcaacacaac      1140
     tgtcgcccca gtcacaaacc aaaccatgtc gccgcccagt caca                       1184
//
ID   Gypsy-64_SpEx-I repbase;    DNA;    INV; 5182 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5182
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4130-4130 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..1306
FT                 /product="Gypsy-64_SpEx-I_1p"
FT                 /translation="MPRASRERLVETPPRAEVNRSRRSESSRRDRHRSRSH
FT                 GDRSRVRSGRRNSRSRSRGGKNRLRAQRDKTRSRSRSRLNETHSDRSRTRG
FT                 ASRSRERSRSRSVYSRRRQSKSRSYPQECTVKDTLSAIMSRLIAIEENTAS
FT                 DSHIPSTHRGSTPPLDKNNSSTTQTLTDAIGLLVNSKRSNSYYVSNFDPAI
FT                 NNFEVWCNEVERAKLANHWDDFECFSRVAHCLRGDAKVWLNEWSTNDRSWF
FT                 NFVKEFKSLCPQKINYAQILHEVINTTSERFLSYAEYARRSLLRLRVIKGL
FT                 SEELMVQVVIHGISDVQVRAAATNADLTIENLVSFLSTYVKPARKSDNNRN
FT                 QDKSVPASASMTKKRHYNGSGQADNKCFTCGRLVILNMYVPINVILRISTT
FT                 GATNTITVPDPFVLFARS"
FT   CDS           1174..4497
FT                 /product="Gypsy-64_SpEx-I_2p"
FT                 /translation="QMFYLRSTGHFKHVCPNKRNFTDKHNGRDKHDNGSRP
FT                 VCSFCKKLGHKESDCFTKARSEAQNSSNNNNQRKVNLCSELSKASDNNDIC
FT                 TAVIQGIPVDVLIDSGALNVSLISSAVVNYFSGSRKPINCSLKGIGDRGFV
FT                 ARECITLTVEFSEIALEVDFVIVPALYMNTPIIVGTDVLNRDGVTFIRTKH
FT                 GQHLTHTPAKVFKVNAVTMCQVDKVNTPLKGAELAKLMTVLREYSSFLISG
FT                 TATTTVNTGKMHISLTSEVPVAYHPYRLSYQEKLKVREICQDLLDKEIIRE
FT                 SNSEYASPIILVKKKDGSDRMCVDFRALNRITVKDRYPLPLIDDQIDRLGG
FT                 SKLFTSLDMASGFHQIPIDESSIHKTGFVTPEAHYEYLKMPYGLCNSPTVY
FT                 QRIINNTLRKFIESGSVLVYIDDVLIISMSIDEGISLLRDVLKTLTQAGFS
FT                 INLRKCSFLTTKIEYLGRVISHGQVRPSPHKVEALLKAPIPSNVKQVRQFL
FT                 GLAGYFRRYIKNYATKTACISRLTKKDVKFEWGPDQDQVRKDIIECLTSEP
FT                 ILAIFDPSLPTELHTDASSAGYGAVLMQVHADGSKRVVSYFSRVTQGAEAR
FT                 YHSYELETLAVVKALQNFRHYLIGVNFKIITDCNALKATERKKDLLPRVAR
FT                 WWIYLQDFNFEIEYRKGVMMGHADYLSRNPPTSRINNIERPLNWAQMAQSA
FT                 DSETVDLIQKLREGRLDSRRYVCQNDVLYYRYSPVGEESRLLCYIPKGHRL
FT                 SLLRVFHDEHEHIGADKTYDLILKYFWFPGLKQFVKKYTSHCLICISKKRV
FT                 PRAPHQPITSWEKSDVPFNTIHVDVLGPLPESNGYKFVLILVDSFTKYCLL
FT                 YPMYRQDTNELKRVFHNAISLFGTPKLIVCDRGRMFEASAFTGWVSEMGSA
FT                 IHYITPEMHHSNGQAERYVRTVLNLLRVESNNKKSTWSDSLCKIQLVLNIT
FT                 KQKSTQYSALYLLIGTNATTPVIRALIRDVAVEDPSPNFEAVRELNRSLAK
FT                 ASLDKNCNNQDARVNRQRHPPRKFQVDDQVFVIKYSQSVGKLDSGMRGPYR
FT                 VIKVLPSDRYELKLLSGARGKTTQAAAQYMVPWKGEWCPESCASFFESKFR
FT                 "
XX
SQ   Sequence 5182 BP; 1426 A; 1122 C; 1229 G; 1405 T; 0 other;
     tcagaagtgg gataggattt cgctcacaaa tagccttgtt agataaaaac aaccgttaat        60
     tttcataatt atgccacgtg cttcccgtga acggttggtg gaaacaccgc ctcgcgctga       120
     ggtgaatcgt agtcgtcgca gtgagtcttc gcggcgcgat aggcaccgtt cgcggtcaca       180
     tggtgataga tctcgcgttc ggtcgggtcg taggaatagc cgttcacgat ctcgtggtgg       240
     taaaaaccgc ttgcgcgcgc aacgtgataa aacgcgttct cgttcacgct cgcgccttaa       300
     tgagactcat agtgaccgtt cgcggactcg aggtgcttcc cgttcgcgtg aaaggtctag       360
     gtcgcgttcc gtttattcgc gtcgccgtca aagtaaatca cggtcctacc ctcaagagtg       420
     tacagtgaaa gataccttaa gtgcaattat gtcacgacta atcgcgatag aggaaaatac       480
     tgccagtgat tcgcatattc cgtctaccca tcgtggcagc acacctcctt tagacaaaaa       540
     caatagttct acaacgcaaa cacttactga tgctatcggt ttgctagtga atagtaaacg       600
     aagtaacagt tattacgtgt cgaattttga cccggctata aataattttg aggtgtggtg       660
     caacgaggtg gaaagggcta agctagcgaa ccattgggat gattttgagt gtttctctcg       720
     cgtagctcat tgcttgaggg gcgatgcgaa agtctggtta aatgagtgga gcacgaatga       780
     tcgttcgtgg ttcaacttcg tgaaggagtt taaatccctg tgccctcaaa agatcaacta       840
     tgctcagatt cttcatgaag tcataaacac cacttccgaa agatttctat cgtatgctga       900
     atacgcgcgt cgttcgttgc tgcgcttacg tgtgatcaaa ggtttgagtg aggaactcat       960
     ggttcaagta gtgatacatg gtatcagtga tgtgcaggta cgcgcagcag cgaccaacgc      1020
     tgatctaaca attgaaaatc tcgtttcatt cttgtccacc tatgttaagc ccgcgcgcaa      1080
     atccgataat aatcgtaacc aagacaaatc ggttccggct agcgctagta tgactaaaaa      1140
     acgccactac aatggatcgg gtcaggctga taacaaatgt tttacttgcg gtcgactggt      1200
     cattttaaac atgtatgtcc caataaacgt aattttacgg ataagcacaa cgggcgcgac      1260
     aaacacgata acggttccag acccgtttgt tctttttgca agaagttagg gcataaggaa      1320
     agcgattgtt ttactaaagc tcggtccgaa gctcaaaata gcagtaacaa caacaatcag      1380
     cgtaaggtta acctgtgtag tgagctttct aaagcaagtg ataacaatga catatgtaca      1440
     gctgtgatcc aaggtatacc agttgatgtt ctcatagata gtggtgcgct caatgtgtca      1500
     ttgatatcat ccgcagtggt gaattacttc tccggttctc gaaaaccaat taactgctct      1560
     ctcaaaggaa taggagatag ggggtttgta gctcgcgagt gcattactct tacggtagaa      1620
     tttagtgaga tcgcacttga ggtcgacttt gttattgtac ccgcattgta catgaatact      1680
     ccgatcatag ttgggactga tgtactaaat cgtgatggcg ttacgtttat tcgcacgaaa      1740
     catggacagc atttgaccca tacacctgcc aaggttttta aagtaaatgc ggtgacaatg      1800
     tgccaagttg acaaagtaaa tacgcctctt aaaggcgcag agctggcaaa gctgatgacc      1860
     gttcttagag agtactcatc atttttaata tccggtacag ctaccactac cgtaaatact      1920
     ggtaaaatgc acatcagctt gacaagtgaa gtacccgtag catatcaccc gtaccgttta      1980
     tcctatcaag agaaacttaa agtccgggaa atttgtcagg atttgttaga caaagagatc      2040
     attagagaat cgaactccga gtacgcaagc ccgattattc tggtcaagaa aaaggacggt      2100
     tcggatagaa tgtgcgtaga tttccgtgcg ctaaaccgta tcactgtcaa ggataggtat      2160
     cccctacctt tgatcgacga ccagattgat cggcttggag gttcaaagct gttcacatcg      2220
     ctcgatatgg cctcagggtt ccaccagata ccaattgatg aaagctccat tcataaaaca      2280
     ggttttgtaa ctcctgaggc tcattacgag tatttaaaaa tgccgtatgg tttgtgtaac      2340
     tcaccaactg tttatcagcg gatcatcaat aacactttac gtaagttcat agaatccggc      2400
     agcgtacttg tttatattga tgacgtatta attataagta tgtcgatcga tgaaggtatt      2460
     tctttgttac gtgatgtttt aaagactttg actcaggctg gtttctctat caatttacgg      2520
     aagtgttcgt ttctgaccac taaaatcgag tacctaggcc gcgttatcag tcatggtcag      2580
     gttaggccaa gcccccataa ggttgaagcg ttactcaaag cacctattcc ctctaatgtg      2640
     aagcaagtac gccagttttt aggccttgcc ggatattttc gacggtatat caaaaactac      2700
     gcgacgaaga ccgcatgtat ctcgcgtctc acaaagaaag acgtaaaatt tgaatgggga      2760
     cctgatcaag accaggttcg caaagatatc attgagtgtc ttactagcga gcctatactt      2820
     gcgatcttcg acccgagcct ccctaccgaa ctgcacactg acgccagtag tgcagggtac      2880
     ggtgctgtat taatgcaggt tcacgctgac ggcagcaaac gggtagtctc gtattttagc      2940
     cgagtaactc agggcgcgga agcaaggtac cattcgtacg aattagaaac gctggcggtc      3000
     gtcaaggcgc tgcaaaattt tcgtcactat ttaatcggtg taaattttaa gatcattacc      3060
     gattgcaacg ccttgaaggc caccgagcgc aaaaaggacc tcctcccacg agttgcacgc      3120
     tggtggattt acttacaaga ttttaatttt gagatcgaat accgtaaagg cgtcatgatg      3180
     ggtcacgcag actacttaag tagaaatcca ccaacgtcac gtatcaataa tatagagaga      3240
     ccgcttaact gggcacagat ggctcagtca gctgattctg agacagtgga ccttatccag      3300
     aaactaaggg aaggacgttt agattcacga cgctacgtat gtcagaatga tgtactttac      3360
     tatcgctatt caccagtggg agaagagtca cgtttgttat gctatatccc taagggccat      3420
     agactaagcc tgttgcgtgt cttccacgat gagcacgagc atatcggtgc tgataagact      3480
     tatgacctta ttctaaagta tttttggttt cccggcctaa aacaatttgt taagaagtac      3540
     acgtcccact gcttaatctg catatctaaa aaacgtgttc cgagagcccc tcatcagccc      3600
     attacatcat gggaaaagtc cgacgtcccg tttaacacaa ttcatgttga cgtattgggt      3660
     cctttaccag agtccaacgg gtataagttt gttctcattc tagtagattc cttcactaaa      3720
     tattgcttac tctacccaat gtataggcaa gacacgaatg aattaaaacg tgttttccac      3780
     aatgcaatat ctttattcgg aacccctaag ctcatagttt gcgaccgtgg tcgtatgttt      3840
     gaagcgtcag cttttactgg ttgggtatct gagatgggta gtgctattca ctatataacg      3900
     cccgaaatgc accattctaa tgggcaagcc gaacgttatg taagaactgt tttgaattta      3960
     ttacgtgtgg aaagtaacaa caaaaagtct acttggtctg attctttatg taaaatacaa      4020
     ttagtgttaa atataacaaa gcaaaaatcc acacaatact cggctttata tttgttgatt      4080
     ggtaccaatg cgaccactcc tgtaatccgt gcactgatcc gtgatgttgc tgtcgaagac      4140
     cccagtccca actttgaagc tgtgcgagaa ctcaatagga gcctcgccaa ggcatcgctc      4200
     gataaaaatt gcaacaacca ggatgcacgg gtaaatcgcc aaagacaccc gcctagaaag      4260
     ttccaggttg acgatcaagt tttcgtcata aaatactcgc aatctgtggg aaaactcgat      4320
     tccggcatga gaggcccgta cagggttata aaggttcttc caagcgaccg ttacgaacta      4380
     aagttactga gtggagccag gggcaaaaca acccaagccg ctgctcaata tatggtaccc      4440
     tggaaaggcg agtggtgtcc cgagagctgt gcttctttct ttgaaagtaa gtttagataa      4500
     gaattttcta aacagtgttt ctgaattaca gttctggcat aattgaagtg tgtgctcgac      4560
     cgagagtgtg aggtggtgtg ccttgccggt tgagaacgtg ctgcctaagt gtcagcaagc      4620
     tcatgaagtc atggagggca gggcactctg agtgtcaggt tgcagcagga gcgtatcccg      4680
     gtggcggaat gggtgctagt gcaactcagg cgctgtcctg gcaggcgtag tcctggttta      4740
     cgtattaccg tggtttgggc actgtcccgg ttcaggcgtt gtcctggcag gcgtagtcct      4800
     ggttcacgtt tttaacgtgg gaacttgcaa gttcaaagta tgagtccgaa agagactttt      4860
     gtaagatgac gtatgcctat ttctgataga gaagtgattt cgtctccggt gtgaatactt      4920
     actttctgtg tgagggcctt gtttgcgtga agtatggcag aacaggcaac gctttatgtt      4980
     gtcgaagttt actaatattt ggtttcttac acagattgcg atgatgacga ctctaccgat      5040
     gccagtggac cctcaggtac agctcctgcg agtcctacta acgcttttgt aaatcctacg      5100
     ggcgaggacg aggaacgaag accgagtcct ccagaagacg tctccggtgc agccgaggac      5160
     ggtgcacggt caggagaggc cg                                               5182
//
ID   Gypsy-64_SpEx-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-341
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4193-4193 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 341 BP; 84 A; 47 C; 68 G; 142 T; 0 other;
     tataagccaa actttgtgtg ggcagtttcg atccccacca cctcctataa aagcaagcgc        60
     tcagttgcgt gcgacttcac ttgctgcttg gtcgttgaga agaaaggtgg ttggcgtcga       120
     tactgtaaga ctgttctttt tgcttatttt tattttccct gttgtgtaac tgtgttgatt       180
     ttgtgtggta aaattaatgg ttgttttgtg tcgtttacac ttttgaatta ttttaagtta       240
     tagtgaaata attgttaaat taagttaatt tggaataaaa actaggtaat ttcgttgtaa       300
     tttgtctttt tttttatatt taacacttct ggttgctaaa a                           341
//
ID   Gypsy-64_TrVa-I repbase;    DNA;    INV; 5164 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5164
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 309-309 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..4905
FT                 /product="Gypsy-64_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDYSSFIIIVTFILNILFLPFVWIQESNLTYNRHINP
FT                 SSGSTYQISYNRLIDPLSDIYHINQICSRKMDQEQFTAFMAAINENQQRLV
FT                 TQLVERLAPANENPRNQAPVINVSHVPPFENFDQNKEKFTYYKQRFENYLR
FT                 MKEIHQDPAKSAQMLLNSIGATNYNLISALVAPRQPQELSYADLIKILEEH
FT                 LSPKKSVLVAQHLFLSICQTDNQKIADYVASLRKDIADCDFSVKCHCNQSV
FT                 SATDLLLRAQFIRGLRDRTIKEQLLQCDSLSFNEIVAKALALEASKADSHE
FT                 LSMLNGAASSTDSTQHINRVSRRDQQSRSKSRNGNIKSRSSKSSSKVNFNR
FT                 NSRSKSRVNYEELGVNNLCLKCGRSNHLSNKCFVNPNKLKCNSCHRQGHVE
FT                 KVCIQTLLNKKKSKVSNITSEDEEEDIREYGAYKIFDIYDQVNSVMANDSK
FT                 KYFVNIKIGSEYQRFEVDTGASHTLISESHFRRLNIKTPLKSAKVIFRSYT
FT                 GNNFSPLGKVIVPVSHQKITSQEELYVIPDGFEPLLGRIWVRHLNINLKDL
FT                 DKSSVNKPRSENVLSIESIDDIEKKFPQVFEQKVGCIPNVNVKLQLREGTK
FT                 PRYIKERDVPIALREAVEKELDRLEAAGILTKCTTSDWGSPLVVIPKTNGE
FT                 VRLCVDYKVAVNDCLINANYPIKRINEVLDSLRNSRYFCRLDLFKAYLHLK
FT                 VDEESSIIQTISTHRGTYRMNRLSFGIKPAPAEFNRIFDQILQGLKKTISY
FT                 FDDVIVHGVTYEECLENLYALLQRLKEHGLHVNKSKCALFRTRIEHLGYII
FT                 QHNQILKSPSKIQAITEMKHPRNVTELRRFLGMVTYYSRFLPNLSSITYPL
FT                 RKLLRANQKFCWSSSCKSAFNQLKSEIASDRVVVPFDPELPVSLSTDASPT
FT                 GVAAVLSHVVEGEEKPIAFASRSLNSAEQNYSQLDREALAIIFGVNRFYDY
FT                 LFGRHFLLVTDNQALTRIFHRKKGLPKITSARLLRYASFLNGFDYDVVFRK
FT                 GADHQNVDCLSRSPVPSKCFSTDMAINQEVSEVCMIAAVEISSESITPDAI
FT                 IQETNKDNELSKLIQEVQASKDETEYIYENGMLFKADRIMIPKSLQPVVLA
FT                 ELHSTHVGITKMKQLARRYCTWKNIDKDIEHLVKSCEECSKIKNNPKKAPI
FT                 HHWDPPVSNWERIHIDYAGPMENRHFLIIIDAKSRWAEIKILQNQAPTSDN
FT                 TIKLLEEVFSTHGYPCVMVSDNAKIFIGDVFKDYCKSNGIVQKFTASSHPS
FT                 TNGLAERNVQTLKHRLKTMSNENLPIAIKIQKILFRYRATPLADGSTPAEN
FT                 YLHRKMRIKLDAMRPIREQKSKQLLNPNTRILQVGDRIQARFFVNNKFVWK
FT                 FGEILRKLGHLHYIIKLDEGREVKRHIDQLLKTSVVRKKVTFSEPEVKSKS
FT                 VPSNLVPSTTIHDNNDFIFDPLCSLKSAGNRSKSPITAGNRPKSPIICREE
FT                 PPVIDLAEDSPIKKKSFATAVSSGTGPKSGLSCQPSTSKSSLQQRNSQVRR
FT                 SLLMKNHSSTFPQRSVVPTVSKRESPVELKRTTVPRGVSSRPQRDKKPPRY
FT                 LGDYDLTE"
XX
SQ   Sequence 5164 BP; 1698 A; 1027 C; 959 G; 1480 T; 0 other;
     gaatggcgac gaggtgaagc cgcggatatt cgtgattaat tcgtgattat cgttatcaaa        60
     aattttgcca tcgcgacgcg accgtcggta ttgccgtagg cctataaaag tattcgcgac       120
     gcgaccgtgc atcaaacgtt cttttttttc aagtggaaca atgtgccgac aaatagcaag       180
     atggattatt cttcttttat tatcatcgtc acgtttatcc ttaatatcct gttcctgcca       240
     tttgtttgga ttcaggaatc aaatctaacc tacaaccggc atatcaaccc atcatcaggt       300
     agcacttatc aaatcagcta taaccggctc atcgacccat tatcagatat ctaccatatc       360
     aatcaaatct gttcaagaaa aatggaccag gagcaattta ccgcatttat ggcggccatc       420
     aatgaaaatc aacaaaggtt agtgacacaa cttgtcgaaa ggttagcgcc agcgaatgaa       480
     aacccgagaa atcaagcacc tgtaatcaat gtctctcatg ttccaccgtt tgaaaacttt       540
     gaccagaaca aggaaaagtt tacttattac aagcagaggt ttgagaatta tcttcgtatg       600
     aaggaaatcc atcaagatcc agccaaaagt gcacaaatgt tgttaaattc aattggtgct       660
     acaaattata atctaatctc tgctctagta gctcctaggc aacctcaaga gctaagttac       720
     gctgatctca taaaaattct tgaggaacat ctttctccta agaaaagtgt acttgttgcg       780
     caacatttgt tcttatctat ttgtcaaaca gacaatcaaa aaattgctga ttatgttgcg       840
     tcactgcgga aagacatagc cgattgtgat ttttcagtaa aatgtcattg taaccaaagt       900
     gtctctgcca cagatctact tcttcgtgcc caattcattc gtggtcttcg agatcgaacc       960
     atcaaggagc aactgcttca gtgtgattcc ttgtcattta atgaaattgt agctaaggcg      1020
     ctagcattgg aagcatcaaa agctgacagc catgaattat caatgttgaa tggtgcagcc      1080
     tcatcaactg attcaacaca gcacatcaat agagtgtcac ggcgcgatca gcaatccaga      1140
     agcaaatcaa gaaatggaaa tatcaagtcc cggtcatcaa agtcatcaag taaggtaaat      1200
     tttaaccgta attcgagatc aaagagccga gttaactatg aagaattagg ggttaataac      1260
     ctttgtctga agtgtggtcg aagcaaccat ttatccaata aatgttttgt taaccctaac      1320
     aagcttaaat gtaactcttg tcaccgtcaa ggtcatgtgg agaaggtctg cattcaaact      1380
     cttctcaaca agaagaaatc aaaagtatct aacataacaa gtgaagatga agaggaagat      1440
     atcagagaat atggtgccta caaaattttt gacatctatg atcaagtgaa ttcagtcatg      1500
     gctaatgatt ctaaaaagta ttttgttaat atcaaaatag gttcagaata ccaacgtttt      1560
     gaagttgaca caggtgccag tcacacatta atttctgaat ctcactttag acgactgaac      1620
     atcaaaactc cacttaaatc agcaaaagtg atttttcgtt cctacaccgg aaacaatttc      1680
     tcgccattgg gaaaagtcat tgttccagtt tctcaccaaa aaataacatc acaagaagaa      1740
     ctttacgtca ttcctgatgg gtttgagcca ttactcggta gaatctgggt aagacatctg      1800
     aacattaatc tcaaagattt agataagtca tctgttaata aacctagatc tgaaaatgtt      1860
     ttatcaatcg aaagcatcga cgacatagag aagaaatttc cccaggtttt cgaacaaaaa      1920
     gtaggctgta tacctaacgt aaatgttaaa ctccaactga gagaaggtac taagccccgt      1980
     tatatcaaag agcgtgatgt tccaatcgct ctccgtgaag cagtggaaaa agaactagat      2040
     aggctagaag ctgctgggat actaacaaag tgcaccacca gcgattgggg gtctccgtta      2100
     gtggtcatac ccaagactaa tggagaggtt cgcttgtgtg tggactacaa agttgcagta      2160
     aatgattgtc tcataaatgc aaattacccg atcaaacgta tcaatgaagt tttagatagt      2220
     ctacgcaatt caaggtattt ttgtcgcctt gacctattca aagcgtacct acatttaaaa      2280
     gtagatgaag aaagcagcat catacaaacc atatcgaccc atagaggaac ttatcgaatg      2340
     aatagactca gtttcgggat taaacctgcc cccgcagaat ttaaccgtat ttttgatcaa      2400
     attttgcaag gtcttaagaa aactatctcc tattttgatg atgttattgt tcatggtgta      2460
     acttatgaag aatgtctcga gaacctctac gccctccttc aacgtcttaa agaacatggg      2520
     cttcatgtca acaaaagtaa gtgtgcctta tttcgaacaa gaatcgagca cttagggtac      2580
     ataattcaac ataatcaaat cctaaaatca ccatcaaaaa tccaagcaat cactgaaatg      2640
     aaacaccctc gtaacgtaac agaacttcga cgtttccttg gcatggtaac atattattca      2700
     cgtttcttac caaatctatc atccattaca taccccttac gaaaattgct tcgagcaaat      2760
     caaaaatttt gttggtcatc aagttgcaaa agtgcgttca accaactaaa atctgaaatt      2820
     gctagtgata gagtagtcgt gccgtttgac cctgaacttc cggtatccct atcaacagat      2880
     gcaagtccta caggggtggc tgcagtttta tcacacgtag tggagggaga agaaaaacct      2940
     atcgcgtttg catcccgctc actaaattca gcagagcaaa actattcaca gctagaccga      3000
     gaggcacttg ccatcatatt cggagtcaac cgcttctatg actatctttt tggtcgacat      3060
     tttcttttgg tcactgataa tcaagccttg accagaattt tccatcgaaa aaaggggtta      3120
     ccgaaaataa catcagccag attacttcgt tatgcttctt tcttaaatgg ttttgactac      3180
     gatgttgttt tcaggaaggg agcagatcat caaaatgttg actgtttgtc taggtctcct      3240
     gttccatcaa aatgtttttc aacagatatg gcaatcaacc aagaagtgtc tgaggtgtgt      3300
     atgatagctg cggtcgaaat ttcctccgaa tcaatcacgc ctgatgctat cattcaggaa      3360
     actaacaagg ataatgagtt atcaaaattg atacaagaag ttcaagcatc aaaggatgaa      3420
     acggagtaca tctatgaaaa tggtatgtta ttcaaagcag accgaataat gattcctaaa      3480
     tctttacaac ccgtcgtgtt agcagaatta cattccacgc atgtcggaat tacaaaaatg      3540
     aagcagttag cacgtcgtta ttgcacttgg aaaaacatcg ataaagatat tgaacattta      3600
     gtaaagtctt gtgaagaatg ctcaaaaatc aaaaataatc caaagaaagc tccgattcat      3660
     cattgggatc cgccagtaag caactgggag cgtatccata ttgattacgc aggacctatg      3720
     gaaaaccgtc attttctaat catcatcgat gcaaagtctc gctgggcaga gataaaaatc      3780
     ttgcaaaatc aagctccaac ttctgacaac accataaagc tgctggagga agtattttca      3840
     actcatggtt acccgtgcgt tatggtttca gataacgcaa aaatcttcat aggggatgtt      3900
     ttcaaggatt attgtaaatc aaacggaatt gtgcaaaaat tcacagcttc aagtcaccct      3960
     tccacaaatg ggttggctga aagaaacgtt caaacgttga aacatcgttt gaagacaatg      4020
     tctaatgaaa acttgccaat cgcaatcaaa attcagaaaa ttctttttcg gtatcgagca      4080
     acgcctttag ctgatggaag tactcctgca gaaaactatt tgcacaggaa aatgagaatc      4140
     aaacttgatg ctatgcgtcc aatacgggaa caaaagtcaa aacaactcct gaatccgaat      4200
     acaagaatcc ttcaagtggg tgatcgtatt caagccagat tttttgtcaa caataaattt      4260
     gtttggaaat ttggagaaat tcttcgtaag ttaggtcatc ttcattatat aatcaagtta      4320
     gatgagggcc gtgaagtaaa acgtcatata gaccaactat taaaaaccag tgttgtccgg      4380
     aagaaagtaa cattcagtga accagaagta aaatcaaaat cagttcctag caacctggta      4440
     ccatcaacaa ccattcatga taataatgat tttatttttg atccgctttg ttccttaaag      4500
     tccgctggaa accgttcgaa gtctcctatt accgctggaa accgtccgaa gtctcctatt      4560
     atttgtcgtg aagaaccgcc tgtcatcgat ttagctgaag acagtccgat caagaagaag      4620
     tctttcgcaa ccgcagtatc gtccggtact ggaccgaaat caggtttgtc ttgccaaccc      4680
     tcaacgtcaa agtcgtctct tcaacaacgt aactctcagg tgagacgttc tctgttaatg      4740
     aaaaatcatt cgtctacgtt tccccaaagg tctgttgtac cgacagtttc caagcgagaa      4800
     tcacctgttg aactgaaacg gactacagtc cctagaggag tcagcagccg gcctcaaagg      4860
     gataagaaac ctcctagata tttgggtgat tacgatctaa ccgaataaat tttgtaaata      4920
     actcgactga ttaaatgtat acatacatta tatatatata tatataaaaa aaaaaggaag      4980
     ttgtttttgt tttgttattg tttaaacgtt aaatgtcttt aattttttga tcctattgta      5040
     ttaatcgtga cagattttgt gatttttttt ttgttgttgt tgaatctcaa ttctatgtaa      5100
     gtgataaatt ctccaggaat tgtttaattt ttttttacaa tgttttcttt aagtggggga      5160
     gaat                                                                   5164
//
ID   Gypsy-64_TrVa-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-64_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 368-368 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 206 BP; 56 A; 42 C; 37 G; 71 T; 0 other;
     tgtaatgacg tcagcgtcag ctttagtggt agcaaattgt tatgacgtca cgtttcgatg        60
     tgtgaacctc cagtctcagc tgattgtcaa tttacatctg aatatacgcg tgtactgttt       120
     cgttcttaca aaatgtgatc gtattctctt ttaccttatc cattcaacct ttctaaatca       180
     tgtagtaaac gggaaaagtc acaaca                                            206
//
ID   Gypsy-650_AA-I repbase;    DNA;    INV; 5594 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-650_;
KW   Gypsy-650_AA-I; Gypsy-650_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5594
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5594
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (20-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           610..1833
FT                 /product="Gypsy-650_AA-I_1p"
FT                 /translation="MEVIEANIEHLRKIENNFKKAPNRSYSKLFLNQKLDQ
FT                 VRELRNIIVDDLATLEDVLSQKYVDSKYVEVRTVTSRIFHFIELRIGSARN
FT                 TNYTFKTLARLAIICRKLRKDPIQSNTMAEQFDIKTATAIVQTYDGSSANL
FT                 NTFIDGANLLKEFTSRNHMEMAAKFLKTRLTGKARQGLPEDVKTIDDIITD
FT                 VKARCTETITAQNIMAKLKASSQKNDLEQFCTDVDSLTTQLQNIYVSQKIP
FT                 TEIAKSMAAKAGIDTLINGIKNTETKIILKAGNYSSVREAIQKVNENTTQE
FT                 ACEKQIFHMVGQKFTNRNRQYFNVQRGNYRGRYVNRNTRFNNNNNNRQYSG
FT                 NYGRDQNRYNPENRYRNNDYNRRGSSQRNHPNRNVFYSENGNQPSTQPQVE
FT                 AEAEHGDQIIHPRR"
FT   CDS           1734..5444
FT                 /product="Gypsy-650_AA-I_2p"
FT                 /translation="QKCVLLGKRQSTLDSTPGRGGSGAWGSNNSSKEINLF
FT                 NINMNYSIFVTVKLEMCEKICTLIVDTGADISVIKENILNPNQNIYPAQKC
FT                 IINGITEGKTESIGLTYTNIKIDYNKIPANFQVVDKNFPICTDGILGRDFL
FT                 ANYGCNICLKSWLLTFSYKNELFEIPIEDKFQDHLVIPPRCQVIKQIFIPE
FT                 IKEDSVVIADQIKPGVFIGNSVINNKIQFINVLNVNSSTRTIPHTFKPKIV
FT                 PLKDYLLVNPNKQKETSTRSHQLIDELNLTTIPDEEIKSKLKQLCLDFNDI
FT                 FALKDEPLSANNFYKQTLKLNSDSPTYIKNYRIPEAHKAEMDKQVRKMVDD
FT                 KIVRPSISPFNSPILIVPKKSNNDEKKWRLVVDFRQLNKTIIADKFPLPRI
FT                 DEMLDNLGRAKYFTTLDLASGFHQIELNENSKHYTAFSSSSGHYEFNRLPF
FT                 GLNVSPNSFQRMMTIALSGLPPECAFLYIDDILVVGCSVNHHFKNLETVFK
FT                 RLRQYNLKLNPAKCNFFKHDVTYLGHHISEKGILPDPSKYNVIKNFPIPKT
FT                 SDEVRRFVAFCNYYRRFIPKFADIAHPLNKLLRKNAVFEWNEKCKTAFETL
FT                 KRKLISPPVLRFPDFKKSFVLITDASKVACGAILAQSYDNVDLPIAFASKA
FT                 FTKGESNKSTIEQELTAIHWAVLHFRPYLIGTKFTIKTDHRPLVYLFSMKN
FT                 PTSKLTRMRLELEEFDYDIKYVQGKTNVGADALSRIKLDSDILKNMTVLKV
FT                 TTRAMSKKTETQPSVQHNTVKQNSNETDHLNAFESLNNTEIYDLPKLYIER
FT                 YKNKSYIYQILNKNFKKVLTRESSTQVPNLTNMFEQIEKWAKELNVEKIAL
FT                 ALSSTIFEFISVHEFKNQANETLQKLQILLYIPQQDIQDTNIITKIIAENH
FT                 ESAFGGHVGINRLYRKLKTMYKWPNMKATITNYVNQCITCKQHKHTIRTNE
FT                 NFMHTPTPLKSFESIAMDTIGPFPKSDSDNRYALTIQCDLSKYVIVKPIKD
FT                 KQASTIAKTFIENCILIYGTPSIIRTDQGTEYKNEIFNKISEMLQYTHIFS
FT                 TPYHPQTIGNLERNHRCLNEYLRQFVNESQTDWDEWISYYAFCYNTTPCTD
FT                 IPYTPYELVFGKMATLPNNLKNPTHIEPIYNYDQYYAELKYKLQATAIRTR
FT                 NIIDKVKNNRNTKQHVTAKPINIEIDDLVMLENPNRNKLDKVYKGPYKVIN
FT                 ITHPNITILDEATNIQHTVHKNRVIKI"
XX
SQ   Sequence 5594 BP; 2159 A; 1063 C; 934 G; 1438 T; 0 other;
     tggcgaccgt gaacagtgag ctcgagtgaa aaaccaaaag ccaaaagtgt ctaacgattt        60
     tagaccggtg aaaagcgtaa cgatcttaag aaaagttact aagtgttctc actaatagta       120
     ctaatcagtt cagtgaagaa ctttaaggtt cagtgccata attatgagct ggttttcaga       180
     caccattatc aacaagactg aagtaagcct gagcacgacg gaggcgagaa tcatcgccgg       240
     caccatcgta tttattgcat cagtgttagc cctgttcctg tgcttgcgtg cacacagtaa       300
     attcgcgaaa gcaaaaatgc ggcagacagc acagcgagaa attcgtttaa acaacgtgaa       360
     aatccaacag tgaagaaatc tgtgaaatca actcaagatc tagtgctaaa gtgcagtgca       420
     caaagaaaaa atactaatcg atatcaactg caggcgagac cactgccgat aaccatcggc       480
     aggcgggttt gaaggacgaa atagtagtgg aggatgcagt tcgacgacga gagtacctac       540
     caggccgccg atgttcaaag ctgaaaaaaa atacgtaagt ggagtgcaat aattttagta       600
     ccctaattaa tggaagtaat agaggccaac atcgaacatt tgaggaaaat tgaaaacaat       660
     ttcaaaaagg cccccaatag aagctattca aaactatttc taaatcaaaa gttagaccaa       720
     gttagagagt taaggaacat aattgtagac gatcttgcta ccctagagga tgttttatct       780
     caaaaatacg tagattccaa gtacgttgaa gtaagaacgg taactagccg aatttttcac       840
     tttatcgagt tacgtattgg cagtgcacga aatacaaatt acacatttaa aacccttgct       900
     cgtcttgcga taatctgtag aaaacttaga aaagatccaa tacaatccaa cacaatggca       960
     gaacaatttg acattaaaac agctaccgct atcgtacaga cgtacgacgg aagctccgcc      1020
     aatttaaata catttattga tggagctaac ctcctcaaag aatttactag tcgtaatcat      1080
     atggagatgg cagcaaaatt tttaaagaca cgcttgactg gtaaggcaag acaaggccta      1140
     cctgaggatg taaagacaat tgatgatatt attacagatg tcaaagcacg ctgtaccgaa      1200
     actatcacag cacaaaatat tatggccaaa cttaaagcaa gtagccaaaa gaacgatcta      1260
     gaacaatttt gcacggatgt tgattcacta accactcagc tccaaaatat atatgtgtcc      1320
     caaaaaatac cgacagaaat tgctaaatca atggctgcta aagcaggtat tgatacattg      1380
     ataaacggta tcaaaaatac cgaaactaaa ataatcttga aagctggcaa ttactcgtca      1440
     gtaagagaag ccattcaaaa ggtgaacgaa aacactacac aagaggcgtg cgaaaaacaa      1500
     atattccaca tggttggtca aaagtttacc aacaggaatc gtcagtattt taatgttcaa      1560
     cgcggaaact atcgtgggag atatgtaaac cgcaatacaa gatttaataa taacaacaat      1620
     aataggcaat attctggaaa ctacggacgg gatcaaaatc gatacaatcc agaaaaccga      1680
     taccgtaaca atgactacaa tagacggggt agtagtcaac gcaaccatcc taacagaaat      1740
     gtgttttact cggaaaacgg caatcaaccc tcgactcaac cccaggtcga ggcggaagcg      1800
     gagcatgggg atcaaataat tcatccaagg agataaatct cttcaatata aatatgaatt      1860
     attctatatt tgtaacagtc aaacttgaaa tgtgcgaaaa aatttgcaca cttattgtag      1920
     acacgggtgc agatatttca gtaatcaagg aaaatatcct gaacccgaat caaaatatat      1980
     atcccgcaca aaagtgcatc ataaacggaa taaccgaagg aaaaactgag agtattggac      2040
     tcacatatac taatattaaa attgactaca acaaaatacc cgcgaatttt caggtcgtag      2100
     ataaaaactt tcctatttgt acagatggaa tcttaggaag agattttcta gcgaactacg      2160
     gctgtaatat atgtttaaaa tcttggttat tgacatttag ttacaaaaat gaactattcg      2220
     aaattccgat cgaagacaaa tttcaagatc acctcgtaat tccacctaga tgccaagtga      2280
     tcaaacaaat attcatacct gagataaaag aagacagtgt agttatagcc gatcaaataa      2340
     aacctggagt attcatcgga aattcagtaa ttaacaacaa gattcagttc attaatgtac      2400
     tcaatgtaaa tagcagtaca agaactatcc cacatacatt taaacccaag atagtaccac      2460
     ttaaagatta cctattagtt aatccgaata aacaaaaaga aacttcgaca agaagccatc      2520
     aactaattga tgagctaaat ctgacgacta taccagatga agaaattaaa agcaaattaa      2580
     aacaactttg tctggatttt aatgatattt ttgccttgaa agatgaaccg ttatcggcaa      2640
     ataattttta caagcaaacc ttaaagctaa attcggatag ccccacttat atcaagaatt      2700
     atcgcatacc agaagctcat aaagcagaaa tggataaaca agtgcgaaaa atggtcgatg      2760
     ataaaatagt cagaccatca atatctcctt tcaattcgcc aattcttata gtacccaaga      2820
     aatccaacaa tgacgagaaa aaatggcgac tagtagtgga tttccgccaa cttaataaaa      2880
     ccattattgc agacaagttc ccattaccaa ggatcgacga gatgttagac aaccttggac      2940
     gggcaaagta ctttacaact cttgatcttg catctggttt tcaccagatc gagttgaacg      3000
     aaaattctaa acactacaca gctttctcga gctcttccgg acattatgaa ttcaatcgtc      3060
     ttccctttgg acttaatgtt tctcccaaca gtttccagag gatgatgacg attgctctca      3120
     gtgggttacc ccctgagtgt gccttcttgt acatcgatga catccttgta gtcggatgct      3180
     cggtaaatca ccattttaaa aacctagaaa cagtttttaa acgattaagg caatataatc      3240
     tgaaactgaa tccagcaaaa tgcaattttt tcaaacatga tgttacctat ttaggacatc      3300
     atatttcaga gaaaggcatt ttaccggatc catcaaaata taacgtgatt aaaaactttc      3360
     caattcccaa aacctcagat gaagttagaa gatttgttgc gttctgtaac tattacagac      3420
     gttttattcc caaatttgct gatatagcac acccacttaa taaacttttg aggaaaaatg      3480
     cagtattcga atggaacgaa aagtgcaaaa cagcctttga aacgttgaaa aggaaattaa      3540
     tttcacctcc agttctgaga tttcctgact tcaagaaaag ctttgtctta attacagatg      3600
     catcgaaagt agcatgtggt gcaatccttg cccaaagtta tgataacgtt gatttaccta      3660
     ttgcatttgc aagtaaagca tttactaaag gtgaatcaaa taaatctaca attgaacaag      3720
     aattgacagc catccactgg gcagtgttac attttcgacc ctacctaata ggaacaaaat      3780
     tcacaattaa aacagatcat agacctctag tctatttgtt ttcaatgaag aaccctactt      3840
     caaaactaac tcgtatgaga ttagaactgg aagaatttga ttatgatatc aaatatgtac      3900
     aaggtaaaac gaatgtggga gcagacgctc tctcacgaat caaactcgat tcagacatac      3960
     tcaaaaacat gacagtgctc aaagttacca ctagagccat gtccaagaaa acggaaacac      4020
     aaccgagtgt acaacacaat actgtgaaac aaaatagcaa cgagactgat cacctcaatg      4080
     cgtttgaatc actcaacaac accgaaattt atgacctacc aaaactatat atagagcgct      4140
     ataaaaataa atcgtatata taccaaatat tgaacaaaaa ttttaaaaag gtcttgacac      4200
     gagagtcaag tactcaagta cccaatctaa caaatatgtt cgaacaaata gagaaatggg      4260
     caaaagaatt gaatgttgaa aaaatagctc tagcgctatc tagtacaata ttcgaattta      4320
     ttagtgtaca cgaatttaaa aatcaagcca atgaaacgct tcaaaaactg caaatactgc      4380
     tgtatatacc acagcaagac atacaagata caaatattat aacaaaaatt attgctgaaa      4440
     accatgaatc agcatttggc ggacatgtcg gcataaacag actatatcgt aaactgaaaa      4500
     caatgtacaa atggcctaat atgaaagcca ccattacaaa ttatgtaaat caatgtatca      4560
     catgtaaaca acataagcac actattagaa ctaacgaaaa ttttatgcat acacctactc      4620
     cgctaaaatc attcgaatca atagccatgg ataccattgg accttttcca aagtctgatt      4680
     cagataacag atacgccttg acaattcaat gtgatttgtc taaatacgtc atagtaaaac      4740
     caatcaaaga taagcaagca tccacaattg ctaaaacatt tattgaaaat tgcattttga      4800
     tatacggaac accttcgatc atacgaacag atcaaggaac cgagtacaaa aatgaaatat      4860
     tcaataaaat ctctgaaatg ttgcaatata cacatatctt ttcaactcca taccatcccc      4920
     aaactatcgg aaacttagaa cggaatcatc gctgtttaaa tgaatatttg aggcagttcg      4980
     ttaatgaatc tcagaccgat tgggatgaat ggatttctta ctatgctttt tgttataata      5040
     ccacaccatg cacagatatc ccttatacac catatgaact tgtttttgga aaaatggcaa      5100
     cgttacccaa taacttaaag aatccaacac atatagaacc aatttataac tatgatcaat      5160
     attatgcaga attaaaatat aaattacaag caacagcaat tagaactcga aatatcattg      5220
     acaaggttaa gaataatcga aatacaaaac aacatgtcac agcaaaacca ataaacattg      5280
     aaatagatga tctcgtaatg ctagaaaacc caaatagaaa taaacttgac aaagtatata      5340
     aaggaccata taaagtaatc aatataacac atccaaatat aacaatactg gatgaagcaa      5400
     cgaatattca gcatacagtt cataagaaca gagtaattaa aatttaattc atttctaagc      5460
     taagtgtata atgtaacgta atggcgaaat taaaagttta tattattagc atttaaatta      5520
     cttgtgaaac atgaagccag agagacataa actttttcaa gactggttaa accactcttc      5580
     cttcaggggg gagg                                                        5594
//
ID   Gypsy-650_AA-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   20-DEC-2018 (Rel. 26.04, Created)
DT   20-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-650_;
KW   Gypsy-650_AA-I; Gypsy-650_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-451
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-451
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2068-2068 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 451 BP; 137 A; 120 C; 63 G; 131 T; 0 other;
     tgtagcattc atattcaatc tcacagcata aaactaaacc ctatcacatc acatagtcac        60
     attccagaac tttccacaac tttctcttta tttgcataat tgagcgacga ccttcaaacg       120
     ttgcagttct tttctgcttt ctttttattg ttgtcataaa agaccattaa agcaaaacac       180
     cccgcaaaag caaaagcaaa gcaccgacaa ccttgaccat tttcttaatg ctgatgcaag       240
     cgcaactcaa cagctgcgcg acacattgac acgcttaacc ctgacgaccg acgcatcacg       300
     ctggctctgt gttttagtta tacctaccct ttttgtaaac tagttataaa acagtcaagc       360
     accagaaata catgattcat tctgaaacgc atcgtacttc gtgtaagttc ttttttagtc       420
     acaaagcctt ctccggcacc atgccacgat t                                      451
//
ID   Gypsy-651_AA-I repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-651_;
KW   Gypsy-651_AA-I; Gypsy-651_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4368
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4368
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2041-2041 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4368 BP; 1198 A; 1210 C; 1062 G; 898 T; 0 other;
     atttggcgac gagtattcaa gaaccccagg gaagcaatgg aacggatgga acaactacag        60
     caagcagtac tccaaatggc agagctcctg cagaagctag cgcaaccaac accaacccct       120
     agcaacccgg agcaaacact cgaggccttg gcaaccaaca tcagtgaatt ttcgttcgac       180
     gcggaaaacg gagtcacttt tgacaagtgg tacagccggt acacggacct gttcgagacg       240
     gatgccagga atctggacga tgctgccaag gtgcgcctgc tgctgagaaa gttggacacg       300
     ccgtcacaca gtcggtacgt caactacatc ctgccgaagc ttcccaaaga cgtcgattta       360
     gccagcaccg tcgaaaccct ctcgaaaatt ttcggcgtgc agacctccat cttcaataag       420
     cggtaccact gtctccagct agtcaagtca gaagcggacg acatcatcac gtacggaggg       480
     aaggtgaacc gtgcatgcga ggatttcgat ttcaagaaca tgaagatcga ccaattcaaa       540
     tgcttggtgt ttgtgtgtgg cctcaaaggt cattctaacg cagacatccg agccaggcta       600
     ctttcccgaa tcgaaggcga aacagcagaa gctcccgtca ctctccaaac cctgatcgac       660
     gactatcagc ggctcgtcaa tctcaaggcg gacacatcga tgatcgagcg ccaatcatgt       720
     tcgaaaccat cggtccacgc ggtccaggag aaaaaaggaa actctcatca gcagtcttca       780
     aaaatggaag gtaaatcacc tcgtagtcct tgttggcaat gcggacagat gcactttgtg       840
     cgcgattgcc cattttccaa ccaccagtgc aagcagtgca accggattgg ccacaaggaa       900
     gggtattgtg gctgtttttc caaaccgaaa tcagtgtcat ccggggagga gaaaaaacat       960
     gccaagccac agccagcaaa caaatcaagc aaaccccgaa aagccaaagc cagaggggtg      1020
     tacatcgtga accacatcgc tgaaagttcc agcaagcgta agtacgtgcc aacctttatc      1080
     aacggcgttg ctaccaagct gcaactggac acggcaagtg acatcaccgt gatctcaaag      1140
     caaacgtgga actgtttggg taaccctccg atgaaaaaac caacgatcca agcaatcaac      1200
     gcgtcgggtg aaccgcttca tctgatgggt gagttccagt gcgacgtcag catcaacggc      1260
     aaaaccgctc ggggaagatg tttcgttacg acggctgcca acctcaatct gttaggcatc      1320
     gactggattg agcttttcga gctgtggtcg gttcccctcg actccgtctg caagcaagta      1380
     acggcgaagt cggtcgacca acagatccgt gaattccgaa cgaagcacgc ggatgttttc      1440
     aacgattcac tgggacactg caagaaaatg aaggtaaagc tttttctaaa accaaatgcc      1500
     aaacctgttt tctgtcccaa gcgaccagtt cccttcaaca cgattccgat ggtcgatgcc      1560
     gaaatcacac ggttgcaaac gttgggcatc atcgaacctg tcgacttctc cgaatgggct      1620
     gctcccattg ttgcagtgcg taaaccgaac ggccgagttc gcatctgtgc ggactactct      1680
     acgggactca acgaaacgtt ggaacccaac cactatccgc ttccaacacc ggaggaaatc      1740
     ttcgcccaac tcaacggcag caacgttttc agcgtaatag acctctccga tgcgtacctg      1800
     cagctcgagg tggatgaaga gtccaaaaag ctgctcacca tcaacacgca tcgtgggttg      1860
     tttcgtttca atcgcctggc ccccggagtg aaatcagcac ctggtgcatt ccaacgtgtg      1920
     gtggatggaa tgattgcggg catacctggc gtccgctctt tcatcgacga tgtcatcgtg      1980
     ttcggaaagg acatgaagtc acacgcagct tcactcaacc tactcttcca gcgactaaag      2040
     gagtatggct tccacgtcaa agccgagaag tgccacttct ttcaaacaca actcggttat      2100
     ttggggcata tcgtggacca acgaggcatc cgtccagacc ccgaaaaagt gaaggctatc      2160
     gttgcactcc caccgccaac caatgtctcc gaacttcgat cgtacctggg tgcgattaac      2220
     ttctacggca ggttcgtgcg caatattcac gaactgcgtc atccgatgga ccagctgctg      2280
     aagaaggacg tgaaatggcg atggactccg gaatgccaga aatctttcga ccagttcaag      2340
     gcgacgcttc aatcaaatct gctcctgatg cattacgatc ccaagcttcc aatcgtcgtg      2400
     gcagcggacg catcaagcac tggcatcggg gcagtcatct ttcatcaatt ccctgatggc      2460
     agaatgaagg cggtgcaaca cgcttcgaga acgctcgcac ccgcggagcg taactatgga      2520
     caacctgaga aggaggctct cgcgttggta tatgcggtga cgaaattcca caaatatttg      2580
     ttgggacgac atttcacact gctgaccgac cacaaacccc tcctgtccat cttcggttcc      2640
     aagaagggca ttccgctaca cactgcgaat cgacttcaac ggtgggcact cactatgctg      2700
     aactacgact tcgagattca acatgtgtct acaagcgagt tcggatgtgc agacctgttg      2760
     tcccggctga tcgaccgaac caagcaaccc gaggaagaat acgtcattgc aacactcagc      2820
     ctcgaggaag atctggtaag catcctttcc gacgccgccg agaaggtacc tgtttctttc      2880
     gcagtgctgc ggaaggcaac atcaacgaac gccacactcc aaaccgtcgc aaaatacatc      2940
     cgtgacggtt ggcccagctg ctccaagaat cttcccgctg cagttcaatc ctacttccaa      3000
     cgccgagaat cgctcagcat tgtcgacggt tgcatcatgt tcggcgacag agtcgtcgtc      3060
     cccgacgagt tccgacgaag gattctgcaa cagttccatc gaggacatcc gggaatggtc      3120
     cggatgaagg cgattgcacg aagctttgtg tactggcccg gcatcgatag cgaaattgaa      3180
     gatttcgtca agcgctgcaa cccgtgttcg gctgcaggca agacttctac caagacgaca      3240
     ctggaatcct ggcccgttcc ttccaaaccc tggtcgagga tccatattga ctatgcaggt      3300
     ccagtagatg gggtctactt cctggtaata gcggatcctt attccaagtg gcccgaggtg      3360
     cacgtaacca aatcgacgac aacgaaagcc acgatcaaac tgctgaatca aaccttcgca      3420
     acattcggcg ttccagaggt aatcgtttcg gacaatggca cccagttctc aagccacgaa      3480
     ttccagagtt tctgtaccag tcaaggtatc cgccacattc gcatcgctcc gtatcatcca      3540
     caatcaaatg gcctagccga aagattcgtg gataccctga agagaagcct tcgtaaaatc      3600
     cgttcagggg gagatacact agaagaagct ttggtcacat tcctgcaggt ttaccgctcc      3660
     actccaacca gtgacctgga cgacaaatca ccggccgaga tgatgtttgg cagaccgcta      3720
     cgcaccgttt catcattact caagccaagc agaagcgaag gagaaatcat atccagagac      3780
     aggacgaagc aaaacgacgc tttcaaccgg aagcacggcg cagtcaagag aggtttccag      3840
     cacggagata ccgtgttcgc caaggtttat caagcaaact cctggcagtg ggaaccagca      3900
     accgtcatcg agaagattgg atctgtaaac tacaatgtgt ttcttgagga gagacatcgc      3960
     ttgatacggt cgcatgccaa ccagctaaag acacgtgttc aggaaagcag ttcagcaagt      4020
     cagccttctc cactatcgat attcttcgat ggtttcggac tcccaactcc agtagagact      4080
     tcgccaaccg gcattcagga cgatcttcca gtgccgcagc agttcgaaga accactgacg      4140
     gccagcccag atatatccta cctgacggaa gatttctcag aggatgaagc cagaagcaac      4200
     aacgggtcca tagacgaacc agccgaggac gaaactccga atgaagctcc agttgcaacg      4260
     gatgtagcag cccaaccgac tacaccaatc ctggagagag gacggcgcat gattcaactt      4320
     ccagcccggt tcaagccata ttggatgatg aaaccttaag gggggaaa                   4368
//
ID   Gypsy-651_AA-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-651_;
KW   Gypsy-651_AA-I; Gypsy-651_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-208
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-208
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2069-2069 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 208 BP; 69 A; 46 C; 30 G; 63 T; 0 other;
     tgttgggtcc cagttgttat cacaacacca tggaaacaac caatctcaaa attgtatatt        60
     ttcaatcaca gcaacccttg tatgactata taagggcacc gactgacacc tcagtcttca       120
     ttagttattt gacttccaat aaattaacat ttaattgtag cagtaaaagt caagctcttt       180
     tcattccgga agtaatccgg acataaca                                          208
//
ID   Gypsy-652_AA-I repbase;    DNA;    INV; 6137 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-652_;
KW   Gypsy-652_AA-I; Gypsy-652_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6137
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6137
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (21-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6137 BP; 2319 A; 1203 C; 1036 G; 1579 T; 0 other;
     tggcgaccgc ttacagtgat tgaacccagc agactagtga aacaaaagtg gaaaagtgac        60
     aagaaatcgc tagctgagaa aaaaaagtga aaatgggaaa atcccagtca aaaacagtgc       120
     aagaaggaag caataatatt aacatagttg aacaccttga gaacaatgat ctaaatcaca       180
     ccgctcacga gatcaaattg tggctaatac taggacttaa cactatacaa gtcctatatc       240
     tactgcataa agtgcttaag aaaaagtggc aacgaaaagc attcgatcgt gcgcgaatgc       300
     tatctcagga caacctgagc agcgttcaag taaacaagta gtcatcggac aatcatcgga       360
     cagattaaaa accaaaagtg aagttcgtga taaaaagaaa aatagtttga aatacgaaac       420
     atgaaaaata aaatatgaaa cacaatgaac gcgacagagg aactatacag agtgatagaa       480
     atattgcagc agggtattct gctcaaaaat gtagtggtca tacatgctcg tgcaaaagca       540
     acagaacagt tcataagaag attggaaatt gaaaacatta ttgcagtgtt gagaagtgaa       600
     gcccacgcgt tcacaatcga agtaaacaaa ttcataacag acattgctcc agtagaacgt       660
     gtaccggtga aggcaaaaga cttgttaaaa tcggcatcaa tggtgcttcc aagcatcacg       720
     ggaaacataa tcatctctac accaaaaggt atccaaactc acctgggtgc ctataaccaa       780
     cggctaggag gaagggtcct ggctatcatc tattaaaaac cgaacgagac tactcagcag       840
     agaaaacaac aggcgttgag gagagcgcct ccgccccatc aaaacgaccg ttgaggagag       900
     cgcctccgtt gttatgaagt tatagtatcc tacaaggtta gtttattagc tgttcatata       960
     ttcagaagtt cttaccaaaa tacgctcata cttaaatgca ttagtttaat ggatttagaa      1020
     tccgttcagc ttgaattaga cttgaaatta gctgaattga atacaatcct cacaaatttt      1080
     gcaaaggcac caaacaggaa ctactccagg aaatttttat tgacgaaaga aaacagagcg      1140
     aaaataatat ataacgatat aaataatatt ctagcgtata acgaagaatt attccgtcaa      1200
     acagaatttg acttttatat acgagggaca agacaaaaat ataatgaaat aattctccta      1260
     atacataata aacttccttt tgctaagact atcgcattag acttcaaaac cgctgcaaac      1320
     gcgttactat tttttgtaaa attaaaaaca aaagtcaatt tgagaagagt tgtacctcca      1380
     gttatggcag ccccaaaagt cgatattaaa ctgggcacca ccctcgtaca agtgtacgac      1440
     ggtgcaccag aaaatctcga gtcattcctc gatgcagtaa accttttcaa cgacacagtc      1500
     gttaatgaat ttaccggagc taccgccgat cagcaagcag cagctcaagt tactgtaata      1560
     agattcgtca agtctcgact gacgggcgtt gctcgtcagg tgattacaga agccaatgac      1620
     ttaccaggca ttttagatgc agtaaaacag cactgcgaat caaaagtaag ctcggataat      1680
     attattgcca aaatgaaggc attgaagcaa aaagattcag ccgaatactt ttgcaacgaa      1740
     gtagaaaaac taacgaccca actcaaagca gcctacgtca gagaacaaat cccggtagct      1800
     acagccaaca ctatggctac caagaaagga gttgaagctc tggtagatgg cacaagggcg      1860
     aatgaaacca aaattattct gcgagctggt actttcacca aaattacaga tgcggtacag      1920
     aaggttatgg aaaacgacaa acccaccagc tcgaatgcac aaatgttttc agttagtgct      1980
     aacacacaaa atcaatatag aaatccgaac accgattcaa gaggacgtgg acatttccag      2040
     aactacagag gaaatgttca tagttcgcag agatatcgcg gaaattttaa taatttccgt      2100
     ggaaattaca acaacagggg taacagattt catcaagcga gaggatcgtt ctaccaccga      2160
     ggatctttcc ctccgagggg acatttttac tcgcatcaag gaatgttttt tgcacagaac      2220
     attccacaac aaaacattcc ccaacatcta attccacagc aactaattcc gcaacaacaa      2280
     aaccagcctc aattaaattc aacaattcaa caaaataacc gaaatacacc ccaaaatttt      2340
     ttaggagtac cccaagggca gtttttgcgg taaacctggc ccaaactaat tttgttctac      2400
     taaacattga atgttctgaa caacaatgta gcttcatagt tgattgtggc tcggacattt      2460
     ccgtgttaaa aattgataaa atcagatctc aacaacaata taacccaaat gacaactgta      2520
     cgatttcggg aataggtaat ggcaccgtaa cctcttttgg aagtatcatt actaatttgc      2580
     aaattaccga caactcttta cagcataaat ttcatttagt ccagaacacc tttccgattc      2640
     ccacggatgg aattttggga agagattttt ttacagcatt caggtgttgt atagattaca      2700
     acagttggat tctaacaatt aaatcagaat acaatattat atcaataccg atttacaatg      2760
     aaacacaaac aacacgcatc attcctccaa gatgtgaaat tataaaacaa attaacatgc      2820
     ctgatctccc agaagatatg gttaccatat gcaatgaaat aactccaggt ttagtatatg      2880
     cgaacagcat cattaataat gacaacaaat tcgtgaaatt tatgaatact acgaatgaaa      2940
     atttaataat tcccgaaaac tttataccaa ctatgacacc attgcgaaat tattgttacc      3000
     ataataaaaa atctaccaaa actacgaaca atgtaagaaa cgaacgattg ttacgagagc      3060
     tacagctaaa taatatcgac ccaaaaatta aatcagatct tgaacgtcta tgtatgcaat      3120
     acaatgacat attcgcacta caagacgata acctctcaac aaataatttt tatgaacagg      3180
     aaattttgct gaatgacaaa tcgcctgttt atattaaaaa ctacagaacc ccagaggcac      3240
     aaaaatctga aattgatcaa caagtccgaa acatgttaga tcaaaatatt attcaacctt      3300
     caatctctcc atataactcc cctatattac ttgttccaaa gaaaaccgat tccgatgata      3360
     aaaaatggag actagttgtt gattttcgac aactaaataa gaaaataata ccggataaat      3420
     tcccgttacc caggatcgat gaaatactgg accaattagg cagagcaaaa tatttttcaa      3480
     ctcttgacct aatgtctgga tttcatcaaa tccccttaca acaacattgt aaaaagttca      3540
     cggcatttac tgcgggcaat ggtcattttg agttcaatag gcttccgttt ggactcaaca      3600
     taagccctaa cagttttcag cgtatgatga cgctggcgct tagtggtcta ccacccgaat      3660
     gcgcattcct ttatgtagac gatataattg ttattggatg ttctttgaat caacacctta      3720
     gcaacctttc agacgttttt gaacgaatga gaggctacaa tttaaaacta aacccgaaaa      3780
     aatgttgttt ctttagaaca gaagtaacat ttcttggcca tcacgtttcc caagaaggag      3840
     tccagcctga taaaactaag tactcaatta tcaaacaata cccaataccg aaaaatgctg      3900
     acgaaacacg tagatttgtt gcattttgca actactacag acgtttcata ccgaattttg      3960
     ccgaaatctc acttccatta aaccggctta cgaaaaaaga cacaaaattt aactggaacg      4020
     aaaaatgtca agaagcattc cttacactaa aacgacaact attatcacca aaaatcttaa      4080
     aatttccaaa ttttaaaaaa gagtttataa tcacaaccga cgcttcaaaa gtagcgtgcg      4140
     gagctgtttt agctcaagag tatgatgata tcgagttacc tgtagcattt gccagtcgga      4200
     tgtttacaca aggtgaagcg aataaatcaa caatagagcg agaactagcc gctattcact      4260
     gggcaatcaa atactttcgt ccatatgtgt acggaaggaa atttgttatt aaaaccgacc      4320
     atagacctct cgtttatcta tttactatga aggatccatc atccaaacta acacaaatgc      4380
     gattagattt ggaagagtat gactttatag tacaatatat aaagggaaaa agcaacgtta      4440
     tatcggatgc actttctaga gtgaatctcg atatacatga actgaaaaat atgtatataa      4500
     tcactaggtc aatgaccaaa tataaaataa agcctcaagc cgttcaacag acttcaccgg      4560
     aacctgatca attccgtgtg tatgatgcca ttaacggttt agaaactttt gatttaccta      4620
     aactaagctt ctcatttaac cagacaacta attcaactaa tttactgcta tttaataaaa      4680
     catataccaa gagtcttgct ctagcgcaag atctcgaatt aaacctaata actacgttaa      4740
     aaagagcatt tgaaattatt gataaaggga tccctacaaa tgttaaaaag acaatgagaa      4800
     atggtaataa aacaagaaat ataagaaatg ctattaaatt cagtacaaag aaggccaaat      4860
     gttttgcaat cgcatcaagt gatatgattt tcaaatatat cgacaaaaac ttatttaagg      4920
     aattaggtaa caaaattctt aggaatgtta ccgtattaat atacgaaaag cctaaagcta      4980
     ttaatactgc cattgaagta gaacaaattt ttcatcagta tcacagcacc ccactggggg      5040
     gacatatagg aataaaccgt ttgtacagaa aattacgacc gtttttttat tggtctaata      5100
     tgaaacaatc aataacgaat tatgtgcaaa aatgtgaact gtgcaaaact aataaacatt      5160
     ttacacaagt aaaaactgac actgttacta ctacaacacc tacaagaccc tttgaagtcg      5220
     tatctatcga cactgtcgga ccgtttccac tttcagcaaa cggaaaccgc tatgcagtgt      5280
     cgatgcaatg cgacttcaca aaattcatca tattagtgcc agtgcaagac aaaacagcta      5340
     caactatggc aaaagcttta gttgaacaat gtatattgat attcggccct atgacgaaaa      5400
     taaaaactga tcaaggcact gaattcaaag ccgtgtttga cgaagtttgt aaaacattac      5460
     aaatactaca cacatgctcc accgcatacc accctcaaac aataggcgcg ttagagagaa      5520
     accataggtg tttgaatgaa taccttagga gtttctgtaa cgaaagaacc aatgattggg      5580
     attattggat gccatattat agtttttgct ataatacgac ccccaattta gatcatgact      5640
     acacaccatt tgaactcgtg tttgcaagaa aagcaaatat attcgaaaca ctgccaactg      5700
     gagtaacccc tctttataac tatgaatctt atgacaagga gatgcgatat aggttacaag      5760
     tagcgcatgc acaggttttg gatacaatac acaaagtgaa acaaaaaaga accaacaaac      5820
     tgaatgaaaa tattcaaccc acaaatattg aagtaggaga tattgtatat ttggcacaag      5880
     aaaatagatc taaattagat cccgttaata aaggtccatt caaagtaata cacacgaaca      5940
     cttcaaacgc aactattgta gacaaccaga acaatcaaac tactgtgcat aaaactaggc      6000
     ttttgaaatt taataggtaa acaaaaaaaa aaaaaaatct aaataagtat tttgtgaaga      6060
     catccgggac tgattactca atgaataatt tcactccact aacgtttcat ttcattattc      6120
     aaaaaaaagg gggaagg                                                     6137
//
ID   Gypsy-652_AA-LTR repbase;    DNA;    INV; 602 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-652_;
KW   Gypsy-652_AA-I; Gypsy-652_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-602
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-602
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2070-2070 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 602 BP; 167 A; 142 C; 121 G; 172 T; 0 other;
     tgtagtggac ctcccttgtt tcattagctc ataaatcata acaacatgag tcacgataaa        60
     agcgcactcc aaacggcagt acgtgtggtc aagaaattcc gagtgataca cttgttttgc       120
     tgaccatcac ttactgccat atgcagtgcg ccacagttca accgcggtgc aatgaaatta       180
     aatagctcaa attacaacgc cacctaaata tatgcagaat agccaacgtc gttcccgggt       240
     gtctaccttt tgtctctctt gctcatgtat cgattgaaga aatcaatcac cgaaatgaaa       300
     ttgtttatat cagcaattat tccctattta agtcgtgaca attatgaata aagaacagtc       360
     ttgattgaac ctagaaccat gtgttttgat tatgatccga agctgtatcc agcctagaac       420
     accataatac caaaacgctt tggaagcacg gtgatctccg gtcttcgcga ccattagttg       480
     acaccaccga tgcttcgctt tccttggttc ttgtgtcgct gttacgtgtc tatgccgggt       540
     ctgtttacaa cgtgtgtcgg tcggtccgtc gaataagaga acggtacggt ccgaccacga       600
     ta                                                                      602
//
ID   Gypsy-653_AA-I repbase;    DNA;    INV; 5883 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-653_;
KW   Gypsy-653_AA-I; Gypsy-653_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5883
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5883
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2042-2042 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 5883 BP; 2293 A; 1125 C; 977 G; 1487 T; 1 other;
     tggctgaccg cgaacaggtg acaaaagtct gcagtaaaag tgcttaagaa aagagcaagt        60
     gttaacaagt gttacccatt gcgacatttt agtaacccaa aatcaatatg ggaaaaacaa       120
     attcaaaacc agttaataac agtggggatc cacaattttt gatccaaaac cagttagaaa       180
     cgcatgctga aatgcatgaa agccacgact tgaaattaac ggtgataatg gttatcgtgt       240
     gcctccaatt agccatcaca gtgtacgtga tgtataaaaa gcactcccgt agagaggcct       300
     tgaaagttgc aaaatcggtc gcctcattac aggtttaaat caaagacgaa ataagaactc       360
     aaagtgtcta agacaaaacg ctaatcgaag aaaattgtta aaagtgaaaa ccccccagct       420
     aagggacaat cacaaccaat gtgagtgata cagaaaaata aacagttcaa acgaagccac       480
     catctatgcc gtgtgcctaa aaatatcgaa aagtgttatc agcgatgaag ctaatcaaag       540
     cccacgaaaa taccgaacga gtgttcctgc gtactgaata ccaacagggg tgagcgttga       600
     ggagagcgcc tccgccatcc actatctact aaaccatcaa ggtgttgagg agagcgcctc       660
     cacctgaaat acactcgtgt ggagacgcga gccaatgtcg ttcatcagca agcagcagag       720
     acaggaagtt ttcaacaaat gcgtgggtaa aacgcatgta tcgtgagtag ttttaaaaat       780
     tattttttca aacattgtta gatatttggt aaattgtcat gaaagacaaa tacaactctt       840
     tgaaattatt attagaagaa ctaaagtcaa agagtgaagt aaggtcttca accagaattc       900
     taaataaaaa gttagctaca gctacggaat tatacaaaca aattactagt aaattaggtg       960
     atagcgagca acatgcacta atatttgaaa aaacaaaatt agtatacgaa acgataataa      1020
     gattaattaa agagaaaaag caaacaaacc taaaatcatt caaaggagtg gctaccgcga      1080
     ttatcttcac aaacagattg aataatcatc taaagatggc gaatataatg gaaatagtga      1140
     aaattattcc gcagttaatt ttgcctttta atggtgatgg agagaaatta aatggtacca      1200
     tagcagcatt aaatgcatgc aaggtactta tcacgaatga aaatcgtgct gtcgccattc      1260
     aggtcgttct ctcacgattc gaaggcaaag ccagagcggc agtgggagat aacccacaga      1320
     atattgatga aataattgat aaacttacga acaagtgcaa aataacagtt gcaccggaaa      1380
     ccgttattgc gaaattgcac gccacaaaac aagtcggtga attaacaaaa ttcaccgaac      1440
     aaattgagaa gttaacgtta gatctcgaaa gatcatatct taatgaaaaa gtcccggtgg      1500
     atacggccac aagaatgtcg gtcaaagccg gtgtaaaagc actcgtttcc gggttaagga      1560
     gcgaggaatc taaattacta ctaaaagcag ggcaatttac ctcgttgtcc tctgctattg      1620
     aaaaaataac agaaaatgaa ccaataccga ccaacaacgt cttacatgtc cgctcaaaca      1680
     actctggaca cagaggtaac aactacggtt accgaggaaa tgttcaaaac tcacgaggac      1740
     gtcagcgtgg aagtgataga agcttcagag gacgtaacca acaatcaaat tatcgtacaa      1800
     attacaatta ttcaaatggg aactatcgcg gatacagtcg cggaaacggt cgtggaaata      1860
     gccgtggtaa ttttcatagt aataattcaa gaatttttta caattccgca caaccaaatc      1920
     aaatgcttca aggaattcaa aactttcaac atgaattggg gtttcaacaa ccactacccc      1980
     aacaacaaca gattcaagcg atacatactc aaccacagca aaaccaagtg gcactagccc      2040
     aattaatacc tcgacgttaa acaaaatctt cactgttcaa accgtttaca gcaactttat      2100
     ttcattaggc atagaagctg cacataaata ctgcaccttt ctcatagatt caggagcaga      2160
     aatttcttta ataaaaactg gaaaattaaa aacatctgaa ttagtaaaca tacaagaaaa      2220
     atgcaacata acaggcataa atctcgaatc cattgaaacc ttaggaacaa tttccactct      2280
     aataaactta cctaacggaa ataaaatacc acataaattc caaatcgtgc cccaagaaat      2340
     acctataccg acagatggta tcttgggtcg agactttttg gtcaattaca gatgcataat      2400
     tgattacgac acttggacgt tatctggtta ctctaaacag tcagaaaatt ttgaactaac      2460
     aattgaagat actttaaacg gtgatctaat tctccctcca cgatgtgaag tcttcagaaa      2520
     attagacaca cagcacttga aggaagactt tgtcttagat gcaactgaat taagagcagg      2580
     agttttttgc tcaaacgcta ttattagctc aaaaaattca attgttaaaa taataaacac      2640
     tacaaataat acggtaaaaa ttaaaaatac ttgtccaaca acaattacac cgttaactaa      2700
     atatgacatt ttaacattcg atcaaactaa acaagagtta aggaatgaaa aactctttga      2760
     agaacttaat gtaaaagaca ttaatataga taccaacaca aaacgaaaac tgattcaact      2820
     ttgcgaaaaa tataacactt tatttgcgtt accaacagac acgctaacgc ataacaactt      2880
     ctacaagcaa caaattaatc ttaatgacga aagcccggtc tatatcaaaa attatagatt      2940
     accggaagca cacaaacaag aaataaacga acaagtaaat aaactactag atgatggaat      3000
     tattcggaat tcaatttctc cgtataattc accattacta ctcgttccaa aaaaatccca      3060
     aaacaatgag aaaaaatggc gtttagttgt cgacttcaga caactaaaca agaagattat      3120
     agcagacaaa tttcctcttc caaggatcga cgatatcctt gatcagctag gtagagcaaa      3180
     gtattttact acgctcgacc tagcatcagg ttttcatcag atcgaattga aagatgaatc      3240
     caagcaatat acagcttttt caacaagcac tggccactac gaatttaacc gactaccgtt      3300
     cggattaaac atttctccaa atagcttcca gaggatgatg accatcgctc tgagtggact      3360
     ccctccggaa tgcgcatttc tttacattga cgatataatt gtgattggat gctcaataag      3420
     tcatcacttt kcaaacctgg aaaaagtctt caaagctctt caaaaataca acctaaaact      3480
     caatcccaaa aagtgtaaat tttttttgcc cagatgtaac ctatttagga catcaaattt      3540
     cttctgaagg tattcaaccg gacaaagcca agtattcaac aattttgaac tttccaacac      3600
     caagagatgc agatgaagta agaagattcg tcgcattcac aaactattac cgtcgattca      3660
     taccatattt ttcggacatc gcagcccctt taaataacct attaaagaaa aacgctaaat      3720
     ttgagtggac tacagaatgc caaaatgcat tcgagacact taagcaaaaa ttattatcac      3780
     cagtcattct gaaattccct gattttacac aaaaatttat tttatataca gatgcctcca      3840
     aaatagccag tggagctgta cttacgcaaa aacacggtga cattgaactc ccaattgcat      3900
     atgcgagtaa aaattttact aaaggcgaga aaaacaaatc gaccattgaa caagagctta      3960
     cagccattca ttgggcgatt acttatttta gaccatattt atatgggaga cggtttactg      4020
     tgaaaacaga ccaccgtcca ctcgtatact tattctctat gaaaaatccc tcgtcaaaat      4080
     tgacacggat gagactcgag ttagaagagt acacattcga tatagagtac gtgaaaggca      4140
     aagaaaatgt cagcgctgat gctctttcgc gaatttttat cgactctgat gaactcaaaa      4200
     atatttcgtg tttaccagtt caaacgagaa acatgaccaa aaaacgaaat acgcaacaca      4260
     atgatacgac aaatactaat tcacttgtca ctgagattga tcaccttagg gcatatgaat      4320
     cagtcaataa cttagatgct tataatatgc cgaaagttat ttttgacttt gacgacaata      4380
     agttatgcat acacatttta acaaagaacc agaaaagaat aattgctcaa gcgcaaatat      4440
     tctataacgg tagcaacatt gaattgcaag aaagtctgca gaccctagat aatatggcca      4500
     agaaaacaga aataaaaacg ctagctatga aaatgaatga taaaatatta acactgattt      4560
     ctcgagaaac attcaaaaaa gcatgcaacg aaattttaaa atgtgcgaag ataatacttt      4620
     acgtgccagc acaaataatt aatgacgacg aaactataag aaggataatc tctgaaaacc      4680
     atgacacacc tacgggaggt catattggta ctggtagatt attaaaacga ctaaaatcaa      4740
     aatattactg gacaaacatg aaacgtacta tcgcagagta cataaaacga tgcgataagt      4800
     gcataagaaa taaacacaga ataagaatta aagaaaattt tgtagaaaca acaactccga      4860
     ccaagtgctt tgagttagtc tcaattgaca ccatcggacc actaacaaaa tcaaaacttg      4920
     ggaacagata cgcattaact atgcaatgcg atctgtccaa gtatataata atcgcaccaa      4980
     ttccagataa aaatgcacag actttagcga aagctttcgt cgaaaatttg attctggtat      5040
     atggttgccc gatagctata aaatcagatc tcggaacaga attcaaaaac gaactgttca      5100
     aaaacatttg tgaatttctc ttaatcaacc aaaaattctc aacagcatat cacccagaaa      5160
     ccataggtag tcttgaaagg aatcatcgcg ttcttaacga atatcttagg catttcatta      5220
     atgaacaaca tgatgactgg gacacctggt tacaatacta cacgttttgt tacaatacaa      5280
     ccatacattc agcccataat ttcagccctt ttgaattggt ttttggtaga gtagctaaca      5340
     caccaagctc catcgaaaac atcatatcca tagatccgca atataattat gactcgtatt      5400
     taacagaatt gaaatacaaa attcaagtaa ctgcgcttaa agcaaaaaca cttttggaaa      5460
     aaagcaaaac aactagaata gtaaaacact ctcaaaacgc aaaccctata gatgtcaagt      5520
     tacacgacaa ggtctatctg aaaaaagaga atagaaggaa actggataac gtatattcag      5580
     gcccatatga aataattgca atacagcacc ctaatgttac cataaaaaat tgtttaacta      5640
     acgaaaacca agtagtacat aaaaatcgaa taattaaata agcgaataca tataatcttg      5700
     caaatgattt taatacataa aatcattctt tagaaaggga aggaatacac atacataaat      5760
     atatatctac ataattaata cttacaataa ataaataaga gaaattgtga gaggttgtcg      5820
     gaatcagaat tatacgtttt gaaaatgcta atattcggta aactattttt ccttaggggg      5880
     atg                                                                    5883
//
ID   Gypsy-653_AA-LTR repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-653_;
KW   Gypsy-653_AA-I; Gypsy-653_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-498
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-498
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2071-2071 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 498 BP; 154 A; 117 C; 83 G; 144 T; 0 other;
     tgtaacatgt gcatcacaca tgttagttat cctttcagtt cttccaaaaa aggaccacac        60
     cagtggtacc catttctgag aaatatttgt tcctatgcca tcgaactgcc tatgccatga       120
     aatgcaaacg agtgcataag catggtcgat gacttccaac tgtgcccaat aaaatactca       180
     tatttcacgc aatgcaaact cggcgcaacg tcgtcaagcg acttgttgct aagagccttc       240
     tccgtatgtt ctcttgctca ctctctccgc ccaaaattta gtatcgatca ctgattggtg       300
     atcgagtaaa taatgaaatg aaataactga ttcccactac ctccttaggc taagcagggt       360
     aacttgaata ttctcaataa acattcttga tcaacgatca gtccgggtag cacgtattcc       420
     ttaccatgaa ctgatgacat ccgtaatcaa gtgttaataa ttcaacttag aaaacttaga       480
     actcaaagta gttctata                                                     498
//
ID   Gypsy-654_AA-I repbase;    DNA;    INV; 5761 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-654_;
KW   Gypsy-654_AA-I; Gypsy-654_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5761
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5761
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2043-2043 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 5761 BP; 2209 A; 1017 C; 943 G; 1592 T; 0 other;
     tggcgaccgt cctaagtgaa cctgtgaatt cgcacttaat caaaaagcgc cgcgaggatt        60
     aataagagac agttacttaa agtgaacaag tgcaattagt gatcagtgca gaaacgaacc       120
     ataaagcact gttgggaaga atgtcgaaat taatcgcgat ttccatagca attgtaatta       180
     ttacaacagt gattgtcgtg aaaattttaa aagaagaatt tgacagctgg tgtgaaacta       240
     tgaagcaagc aaaatacatc acccttacaa actaagtgaa agtgaactaa aagtacaaaa       300
     atgggtgcaa ccgagtcgaa agaagaaaat atcattgtgg ctcagcaagc ccaacaagtt       360
     gctcctgctg taacaaaaaa cagtttagaa tcgaatgata ttatcgcagc atgttttgta       420
     ctggctatct tagccacaag cgcatatttc gtgtggcgtt gttttaaaag agaaattgat       480
     ttgcgcatag cgaaaagtaa caagagttcg cgtgttacaa atgtatgaac aagaacaatg       540
     tgatgtgact aataattagt gaaaaataac attgaaaaag caacgtgtca cgaagaagat       600
     ccatcgcagt tccagcatga accagcacag tggttccagc aataaccaat caacaaatcg       660
     tcaaaatgaa ggtcatcgcc gcattcgtcc tcttcatcgc cgtcgtcgga gccctggcag       720
     cagaggaata cagtgcacca taacgcacca taaagataat tgatatgtga tcggtatgta       780
     caaccaaaga caagtagatg aactattatc aaatctccag caagagctga aaaccctaag       840
     aaaatcccca aacaggaagt atttaaaaac gaccctgtta gataaactta ggaaagcaaa       900
     agaattatac gaaaatattc tatatatctt agaagactat gatcaatatc atcaaaaagc       960
     attattaaga gatgctcgtt ctttatttag tgaaataaaa atattcattg atatcagatt      1020
     agactatggt aagcatttga ttaaatttaa agcacttgcg aatataataa ttgcattttt      1080
     taaacttcga aaaaaacata tacaaacaaa catgttcgat tataaaacgg caacttcttt      1140
     ggtacaacca tacgatggtt cagttgcggg gttagatgca tttatagatg catccaatct      1200
     tttattggaa attattcaag ctggtgagga agaaatagcc gcaaaattcc tcagaactag      1260
     acttacagga aaggctcgta ttggattgcc aaatgaagct ataacaatac ctctaataat      1320
     ccaagatgtt aaaaacaggt gtcaagataa aacaacacct gagagtatca tagcaaaact      1380
     taaggcgata aaatctaaac aatcaaatca aaaattttgc gaagaagttg aaaatctcac      1440
     tattcaactg aaaaatgttt acattgaaag caaaattcct gcggacgttg cttctaaaat      1500
     gtcaactaag attggtgtag aagccctgat aaatggagtc agtaatccag atgtgaaact      1560
     gatactgaag gcaggtacat ttacagatct caaggatgcg atccaaaaag taaacgaaaa      1620
     tataccagaa atcgataatt ccgcccaact actaactatg aaaggaaatc acaactttca      1680
     acaaaaattt aataattatc aaaatcaata tcggaatcaa aataataaac gatacgatta      1740
     tcgtaacaac aaccgtggac attttaacaa cagaaattct tacggtaatt attctaccag      1800
     aaatggaaat aattttcaga atcgcatgca accgcgatac tttaatagta atcgaggcca      1860
     taataatcgg aataacaatg ctagaaatgt ctatgtagca ggtgctgcta atgttccgaa      1920
     cttgaatcct gagtcggaaa tacaagaacg ccccttcgac aataatcaac gtcaacatat      1980
     gaatcgacat tttttaggtc aaatggatca gctgccccat acaacacctc gagctccatt      2040
     tatacaataa atctgaaggc agctaatttt gtcaatcttt ggttagaagg aaatcgtgaa      2100
     tgttccttta tagttgatag tggtgcagat atctcaataa taaaaataaa taaattacca      2160
     cctcaacata tagtcaatga aaataaacgg ttccaaatta caggtataac gcatggaacc      2220
     caggaaactt tagctgaaac gttagcaact ttatattttg agaatgacat aacaatatgt      2280
     cataattttc aaactgtcga ttcacaattt cctatccaca ctgatggcat attaggccgt      2340
     gattttttat ctaaatttaa atgcaattta gattacgacc attggctatt gacatttaga      2400
     attttcaacg aagaaatcgc aataccaatt gaggacaatt accaaaacaa catatgcata      2460
     cctgcacgtt gtgaagtggt gcgaagaata ccaaatttga atttatctaa agattctttg      2520
     atattgtctc aagagattca accaggtatc ttttgcggca ataccatcgt gtcacatcaa      2580
     agtccattag taaaatttat taacacaact gattcatcag tcattattac agattttgtc      2640
     ccaaaaattg aaaatttaga aaactacaaa caggcagtga atacaagttg tactaaacct      2700
     cataaaaaaa gagtacaaga aattttaaat ttgacaaaag tagatgaatt tcctccacac      2760
     ataaaacatt ctcttaaaaa gttgatagaa aaatatgaag atattttttc gctcgcagat      2820
     gaaaaattat caacaaataa tttttactct caaaacattg aactgacaga ccaaaaagcg      2880
     gtttacattc ccaattataa aattattcat gcgcaaaaag atgaaattaa cagacaaata      2940
     aacaaaatgt tagaagatga catcatcgaa ccatcaactt caccttttaa ttcgccaata      3000
     ctgttagttc ctaaaaagtc cgatagcaat gaaaagaaat ggagattagt tgttgacttt      3060
     cgtcaactca acaaaaaggt agttgcggat aaattcccgt taccacgtat tgatgtaatt      3120
     ttggatgaac tgggccgagc taaatatttt agcactctag atttgatggc cgggtttcat      3180
     cagattccgc tagaagaatc atcaaaaaaa tacacagcat tttcctctcc atccggacat      3240
     tttaatttca aaagattgcc atttgggctt aatgtcagtc caaatagctt tcaacgtatg      3300
     atgaacatag caatggctgg attgaatcca gaatgtgctt tcgtttacat tgacgacatc      3360
     gtagttattg gatgttcagt caaccatcac ctgaataatt tatcaaaagt ctttgaaagg      3420
     ctgagatatt ataacctgaa actcaaccct atgaaatgca aatttttcaa gaccgaagta      3480
     acatacttag gtcataaaat aacagattgt ggaattttac cagatgattc caaattcaaa      3540
     attataagag aatatcctgt acctacaaat gcagatgaag tgcgtcgttt tgtagctttc      3600
     tgtaattatt ataggaaatt tattcctgat ttcgcagaaa taactaaacc tctcaacgat      3660
     ttgttaaaaa agggagttag cttcaaatgg aattatcttc atcaagaccg atttaataag      3720
     ctcaaaagtt gtttactttc tccaaaaatt cttagctatc cagactttac aaaagaattc      3780
     attttgacaa cagacgcttc caacattgct tgtggagctg tattgtctca aaaatacaca      3840
     catggtgatt tacctattgc attcgccagt agagcattca ccaaaggaga aaagaataaa      3900
     cccgtaattg agaaagagtt gactgctata cactgggcaa tcaactactt taaatcatat      3960
     ctgtacggtc gaaggttcaa agttcgtacg gaccatagac cactagttta tttatttgga      4020
     atgcgaaatc caacttcaaa gctgaccaaa atgcgtctcg aacttgaaga gtttgatttt      4080
     gatattgaat ttgtcccagg taaagacaat gtatgtgctg acgcactgtc aagaatacca      4140
     agtaattcag aagatttgaa aacattaagt atccttagag taaacacaag atcgatgact      4200
     cgatcattca gaactaataa taaaccggtg gaagtgtcaa aaccattgaa caagattgat      4260
     caccttgcaa tttgggaaac ggacaacccc tcggaagtaa gaaaacttct taaagttagt      4320
     tgtgaagtgc accacagcaa acttttatta aaactattca atcataacta tcgaaaaatg      4380
     ttaggacaaa ttattgttcc aatactaaac aaaaatggaa gtcaagcttt agagtttgcg      4440
     ttcctacaat tatcaacact catgagtaaa tataacagaa acatgctagc aatttcaaag      4500
     aaggataaca tgttcaagaa catgtcgatt gaaacattta aggaaatcgc aaatattgcc      4560
     atatccaatt ataaaattat cctgtttaca cctccacgaa tattgaagaa tattaaagaa      4620
     attcaggata tcctcaaaca atttcatata atacccaccg gtggacatgt aggtagacat      4680
     agattatacc tgaaggtaag agaatatttc gtgtggaaaa acatgaaaaa tgacataatg      4740
     aattttgtcg gaaaatgtgt ccaatgtaaa ataaataagg tctatagaca cacaaaggaa      4800
     gcagaagtaa ttactacgac tccttccaaa ccgttcgaag ttatctccgc agacactgtg      4860
     ggaccactta caaaaacgaa caacgggaat agatttatac taacattgca atgtaactta      4920
     tcgaaatacg tgatattgat ccctgtacca acaaaagaag caaacgtttt agctaaagca      4980
     attgttgata acttcatctt aacttttgga tcatttcttc aacttcgaac agaccaaggg      5040
     tctgaataca ataacgaagt aattgaaaaa atatgtaaac atttagaaat caagcataca      5100
     ttatcaactg cctatcaccc acaatctata ggagcgttag agagaaatca cagatgttta      5160
     aatgaatatc tgagatcatt cactaacgct caccaaacag attgggacga ttgggttaaa      5220
     tattacgaat ttacctttaa cacgactcca cacactgaac atggttatac cccatttgag      5280
     cttgtttttg gccaaaaggc taaattacca caaaatattc aacatgatgt acacaaaatt      5340
     gagccaattt ataatatcga acaatatcat aacgaactta aattcaaatt gcagtatacc      5400
     aaccaaattg caagaaaaaa tctcattcaa aataaagaaa agagacaaat gaaaaataat      5460
     gaagagacta atccaatcaa catttgccct ggagatagtg tatatctttc taaccataac      5520
     agaaaaaaac tagatccttt ctatctagga ccgtatattg ttcataaaaa tgaagatcca      5580
     aactgtgtta taattcaccc tcaatctaaa aaacaatcta cagttcataa aaataggtta      5640
     atcaaaatgt aaaataaagc aaaagaaaaa tatggtttat tattgttaat cgttaatcgt      5700
     tgttaattat taactcgtta atcagaatgg tgacaccatt cttcttttta aaagggggag      5760
     g                                                                      5761
//
ID   Gypsy-654_AA-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-654_;
KW   Gypsy-654_AA-I; Gypsy-654_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-404
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-404
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2072-2072 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 404 BP; 137 A; 88 C; 78 G; 101 T; 0 other;
     tgtggtgacc ttttctacat gacctacata gctttccatt tctatacatt tcctacattc        60
     caaccgaaag taaagcataa caccaaacat accagtagca accttaaagc gctgagtagc       120
     aaacattcaa acttccttat tcatgccaca ccagaaccag gtcattagta taataaaaca       180
     aaggcatggt cgagttgcga gcgtgctctt aacagctgac cgtataggct taagagagtg       240
     agagcgtgag taacgcactt atgcgaatgt ccaattgaag tagtagaatg taaggtagct       300
     ataagtatat ggaaaaataa acaaaaggca atcagtttga tcaaccgcga agttgcgtga       360
     cttatgcatg tcaattaatc cgaaccatcc acgcgactcg ctga                        404
//
ID   Gypsy-655_AA-I repbase;    DNA;    INV; 6020 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-655_;
KW   Gypsy-655_AA-I; Gypsy-655_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6020
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6020
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2044-2044 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6020 BP; 2335 A; 1008 C; 1017 G; 1660 T; 0 other;
     tggcgacacg tgccctaagc ctacagtctt cgtagttatc gaaaaagtga agttggtgta        60
     acagtgagca aaaatgtgcc attaatcggt aaccaaaaaa tatattcgtc atgaccgata       120
     attggcggcc ttcaggcaaa gtgccgtgtg tggtactgat tattggactt gtactaatgg       180
     cattaatgtg taaaatagta atgcaattaa taatcgagca gaaagaagtg accgataagg       240
     ctaaattcgc ccatctgttt gctcattggt aagcaagaag aattacgttc gcgtaagaaa       300
     gtgaagcgaa gaacattgcc agagaaaaca ttaccttcca caacctgtaa ccgacacagt       360
     taaagtgcga ttccattgcc cggcctcgtt cgaaaaaagt gccacctaaa cgaacgaaat       420
     gggaaatacg gaaagtaacg accaaaacac acacgttaaa cagttaggtg accagcaagt       480
     cactattatt gaaaatcagc aaattagcac acagcttcat aaccagcacg atataaaact       540
     gtggataatt ttatttataa cgagtgcctt attaacatta aaattagtga gaatgatgtg       600
     gaaatgctgt aagaagcaaa ctcttaaagc attaagcacc gcaaataaag tgcaaaacgt       660
     ttgaacattg aactgaatca tttaaattag ctgttgcaat cgctatagcg aatgtggtag       720
     agtgtgaaaa tcgtaatgtc atcgcgaagt gcgcgaaagt taacaatatc gtcaaattca       780
     accacactgc gcttatggat agcgtcacat cattgcgaac caaaggcatc aacaaagcag       840
     agtcccccgc acaacccacg gtagagccgt tgagtggtag aatgattaac tgtaaacccg       900
     ctactgttgc tgatacggct gttgttgatc caggattgag cgcatcaaac tacacataca       960
     aagtaatgga gtggataatt ataatcaaag gttagtagaa atagatagtg ttaagtaata      1020
     tgttgtaaat ttgtaaaatg cgtttgacgt agtataaatc attgtgttaa aggtgttaaa      1080
     ttgtaaatgt gtaaaaccgg taatctttga acaaagtgtg taatggtttt tcgtgtttta      1140
     aaattcaatg gatgaagata tcgatccatt aattaaaaaa ctttccaata ttttgagaaa      1200
     tctaaaaaag tgtccaaacc gaaaatatct aaagagtact ttgcaagcta aagcaagtga      1260
     aagtcgacaa atttatgaca atcttataga attatttcaa ttaattgatg aaacaagaca      1320
     aagattttta accaaagctg tacgtgatat ttacagccag attaaaattt ttattgatac      1380
     caggcttgat acaggtattc atctgttgaa gttcaaacaa gtagcacaag tagtacttgc      1440
     aattgaaatt cttaaaaaag ggagtcgaaa agttaccatg gcaaataata tggaaattgt      1500
     gaagcttatt gctacgcttt tgcctcaatt caatggcaat gcagataagc ttgaaggtac      1560
     gaccgccgcc ttgagagcta ttgatacgat ggtaaacgat aataatagag ctatcgccat      1620
     tcaggtgata ctctcaagat tggaaggcaa agcacgatca gctgttaatg ctgctcctgc      1680
     aactgtcaac gaaatcatta caagtttgga acagagatgc agaattacgc agtctcctga      1740
     agctgtagtt gcaaaattga acgcaactag acagacttcc actatcgtag attttactga      1800
     caaaattgaa aaactcgctt tggagttgga aaaaacttat ttaacagaaa acgttccatt      1860
     agcatccgca accaggttag catctaaagc tgccgtaaaa gcgttgacca atggagtaaa      1920
     gaactccgaa atccaactaa tacttaaagc cggacaattt gaaaacctta cttctgcaat      1980
     caccaaggta actgaattgg aggctgatca aagtcaacag aaacaagttt tctggaccaa      2040
     tggccaccaa ccacgttatc aaccacgtcc aaccttttca aatcaccagc ctaggatgat      2100
     aacttctact tatcgaggta gaagatcaac ttatagggga cgaaacacaa atactgcaaa      2160
     tcgtttccag tatcagccac gaccgcaaac aaacagtttc cctgatagaa accacagtca      2220
     tcaatcaaat aaccgaggta gaagaggtac gaattctcgt gtgtatgttg cacaggaaaa      2280
     ttctagtcaa caacaatcaa caaaccaatc aaaccaacaa caagtgacaa acaatccttt      2340
     tttagaggta cagtacgggc gtactcaata agagtttcag catcaaattt tgtcttgctc      2400
     aaaactgatc tgtcagacac tcagtgtaca tttattgtag actgtggttc tgatatatca      2460
     gtgatcaaag cgaaatgtgt taagcccacc aaaacatact tcccaaacca aaattgtaat      2520
     atagtaggta taggtgaagg tacaatagcc tctctaggta gtaccaaaag tacaataaat      2580
     attagtgaac atatgataga tcaaattttt cacatagttg aaaacgactt tccaataccg      2640
     acagatggta taataggaag agattttttt gtaaataatc gttgtacaat agattatgat      2700
     ttatggttgc ttaatatcag tataagtaac gaagttttta ccattcccat agaagataac      2760
     gtagatggaa aatttattat acctggaaga tgtgaaatgg tgaaaagaat tgacgttcca      2820
     gataatgaag aagatgaact acttgtttgc tcacaagaag ttcagcatgg aatttttata      2880
     ggaaactcca ttataaataa gaaaaatcct tacgtaaaat ttattaatac attaaatgag      2940
     catgtagtag taaaaccctt caaacctact ttagaacaac taagttgtta taaaataatg      3000
     aacgtctcaa attcgaacat taagcatagt aataggattg aagaattaat tactaaagtg      3060
     aaaattggga atatttcaca caaaactcag aaaaatcttt acaaattgat gatgaactat      3120
     aatgatgtat ttcatatatc agaggatagg ctaacagcaa ataattttta cgaacaatca      3180
     atagaattaa ttgacaatac ctccgtttac attcctaact acaaacagat tcattcccaa      3240
     caaactgaaa taaatagcca agttaagaaa atgctcgatg atggtatcat tgaaccatct      3300
     gtttcgcatt ttaactcacc catattatta gtaccaaaga aatctgactc tggtaaaaaa      3360
     tggcgtctag ttatagattt tcgtcaattg aatagaaaaa tcttacccga taaatttcca      3420
     ctgccaagga ttgaaaccat tcttgatcaa ctgggtagag cacgctattt tactacatta      3480
     gatttaatgt ctggatttca ccagatacct ttggaaaata attcaaaaaa gtatactgct      3540
     ttttccacta gcgatggtca ttatcaatat acaagattac cctttggact aaatatttct      3600
     cctaatagtt ttcaaaggat gatgactatc gcaatggctg gactatcacc ggaatgtgca      3660
     tttatttacg tagatgatat tgttgtgata ggctgttcag aaaatcatca tcttagaaat      3720
     ctagaaaatg tcttcgaacg tttaagaatg tacaatttaa aattaaatcc tgaaaaatgt      3780
     gattttttca aaagtgaagt cacatattta ggtcacaaaa tttcagataa aggtataaca      3840
     cctgatgacg caaaattttc aatcatcgaa aaatatccag caccacaaaa tgctgatgaa      3900
     gttagaagat tcgtcgcgtt ttgtaactat tataggaaat tcattcaaaa ttttgcttta      3960
     atagcacgac cgttaaataa attattacga aaagatgtaa aatttttatg gacatcagaa      4020
     tgccaggagt catttgaaaa tttgaagaaa aaactacttt cacctcaaat tttacaattt      4080
     cccgactttt cgaaagattt tactttaacc actgatgctt catccttcgc atgtggtgca      4140
     gttttgtctc aaaaccacaa tggaaaagat ctacctatag catttgctag tagaactttt      4200
     acaaaaggtg aagagaacaa agctgtaatt gaaaaagaat tagctgctat acactggtct      4260
     ataaattact ttaaatcata tttatatgga cgtaaattca aaattagaac agaccacaga      4320
     ccattagttt atttgtttgg aatgaaaaat ccaacttcta aactaaccag aatccgattg      4380
     gatcttgaag aattcgattt tacaattgaa tatatggcag gaaaagaaaa catagtcgct      4440
     gatgctttat cacgaataaa gttgaattca gatgatttaa aatccatgtt cgttttaact      4500
     agaagcatgg tcaaagaaca agacaaccca aacccaaatc aaacagtcac cttgcagcct      4560
     gatcaactca agatgtatga ctcgttgtca aatgaggagg ttagaggtat tccaaagctt      4620
     gaaatcgaag ttataaaaag aaacaagaaa ttcgtacaat gtgtagtata tattatgaat      4680
     aaaaactaca agaagtctct tctattagta ggagagtaca gaatttgtct ccaagaacct      4740
     gtcgcattag agtacatggt tcgagatatt gaaatagctg ctgaaaataa aagcatgcac      4800
     aaaataggtc ttgatgttaa cacaacgttt atgaaattat tagacgtcga tatattgaag      4860
     aaacttgcaa gcaaaatact caaaaaacta aacatcgtac tatttgaacg accaaaaata      4920
     attattgatt cccatatgat atccgagatt ctcgagaaaa accataacac accaaccgga      4980
     ggtcatatag gacagaacaa attatataaa aaacttagga aagaatatga atggaagcaa      5040
     atgaaacgaa caatcgcaga gttcgtaaga aaatgtaacg cgtgtaaaat gaataaaaac      5100
     cagcaaaaaa cttgtgaaaa atttgttaaa acaactacac cacttaaacc atttgaaatt      5160
     ataagtatag ataccgttgg accatttgtc aaaacaataa acaacaatag atacgcagtc      5220
     acaatacaat gtgatcttag taaatacata gtcattattc caacaccaaa taaagaagca      5280
     catacaatcg caaaagcaat agttgaacat tttatgttga tatatggaac tacaataaag      5340
     gcaataagaa cagatttagg gacagaatat aaaaacgaat tatttacaaa aataaacaat      5400
     ttttttgaaa ttaatcatat cacctcaaca gcatatcatc cccaaacaat tggctcactg      5460
     gaaaggaatc ataaatgttt aaacgaatat ttaagaatct tttccaatga acacagaaat      5520
     gattgggatg aatggacaaa ttattattgt ttctcttata atacaacgcc aaatttctca      5580
     acaaattata caccttttga actagtattt ggcagatcag aaaaaattaa taaggaacta      5640
     ttatcaacaa aaataaatcc aatttataac gtagatgatt acaatcaaga atttcaacac      5700
     agattaaaaa ttgcttacaa cagagctaaa gactatttgg aacaaacaaa attgaaaacg      5760
     atacaaaatc aaaaaaatgt aaaaccgatt gaaataatag taggagataa agtagggttg      5820
     acagtcgaaa atagaaaaaa attagatgct ttatattcag gaccatacat tgttaaaaat      5880
     attatagacc caaatgttac tatagaaaat atgcttacaa atcaaaacca aattgtacac      5940
     aaaaatcgac taataaaaat ttaagacaaa aagtacttgg tcatagaatg atataacatc      6000
     attctcctaa aaggggaagg                                                  6020
//
ID   Gypsy-655_AA-LTR repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   21-DEC-2018 (Rel. 26.04, Created)
DT   21-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-655_;
KW   Gypsy-655_AA-I; Gypsy-655_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-398
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-398
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2073-2073 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 398 BP; 124 A; 67 C; 77 G; 130 T; 0 other;
     tgttgagtaa tgtattcaat attagtagat gaattgatca aattcatagg aagtcgctga        60
     agtgcgtttt gttcaataac atgttactca aacgtagcat gtgtggaaca acaccacgcg       120
     aaagtttata aatatttgac acattggaat ttggtgccga tgttgtttaa cctagttttg       180
     gtaaactatg aaccaggaac tttcggtctt ttcttgattg ttatgtttac gtttgaagta       240
     tatgattgaa taaagacgat tccaacttcg gacattgatg aagaaggttc accttccgtg       300
     accatcttta gaactaaagc aaagtgttat aattacaaag tgatgcatca ccggtatcca       360
     ttcgtagtcc ttctccacca ttaggcaaaa ccacgata                               398
//
ID   Gypsy-656_AA-I repbase;    DNA;    INV; 6006 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-656_;
KW   Gypsy-656_AA-I; Gypsy-656_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6006
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6006
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (22-DEC-2018).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 6006 BP; 2257 A; 1208 C; 1078 G; 1463 T; 0 other;
     tggcgaccgg actatgatct gcagtcttca agtgttaaat atagtaaaag tgttaaacgt        60
     ttaaagcaac aaaatgggtt ggttcagtga tacaattgtc aataacaacg agaacaccac       120
     tgaagtaaga ataattgcgg gtggattcat cataatggta ggaatcgtaa ttggctactt       180
     gtgcatgcgc gcgcacaata aatacacaag tgcgaagatc cgccaaacgg cgcaatcaga       240
     ggtacagttg aacaacatac gcacgcagaa atagtgacag tgaaatgtgt acaaaacgtg       300
     attcaacatg aaatccagct caacaacgtt cgaagcaagt gatagacaaa aaaaaacgtc       360
     acatgaacaa tgaattaaaa ctgtcgaaaa cgcgtgtgaa ttaacgacaa aaaaaaaaaa       420
     aacattacaa agctactgtg gaataagtac caaaaaacga acacgttcaa aaacaacgag       480
     gcaatgcgat cgagcagcgc gtgtgaaccg caaaaaacag ctaactaatg ataaaactcg       540
     cgtgcggggt gcggggctgt tggcccatag tgttcacatc gacgacgacg gtgccaacga       600
     cgccgctgat atcaacaacg gaagaagcgt tgagctacac cataaacgga caaagtgatt       660
     tatcaagcaa ttgggtatac cccatagcaa tcggatcaat aatagcgata gtgattacag       720
     tgttaatcat cagaaaatgg atcaaaacta acgagaagaa gaagaggaaa gcagaaattc       780
     aacttatgca gatcgtcatc gcagcagctc aaaaatcggt gatcgagaac acgaacaagg       840
     agtaaacgag atggcgcatg tgcagcgact acagaaaagc taaatacaat ggtatgtcaa       900
     aaatatatgt atatatgtaa cctactgtaa aaccctatac cccaaatgta aatgtaaaag       960
     tttgatacac aaatatcagt aaaacctttc tatactatca gatttagttg gaaattttta      1020
     aaattttaat gaataggcta agattcatag aagatgaaac caaaagggaa tatcaaaacc      1080
     ttaagaaaag tataaataga gccagaactc ttcagggaat cttgcaaaaa tcagaaaagc      1140
     ttaaagacct tcgtaaggag tataaaacgg ttctaaattc tttccaatac agacttagcc      1200
     cgaaagattg gcaattagaa gttgcatatt acgaaaagtt aaaaccagta ttcgaggatt      1260
     gtcataaaat tctagacaac tcaaaaatac tcccaacatt caagtcaata gccaaaactg      1320
     caattatttg caatcggctc aaaaataccc ccgtaaaatc agtcaccatg ccttttgaaa      1380
     tcaaagaagc cacggcactc gtccaaacct atgacgggtc tgccgatggt ctagcagcat      1440
     tcgtggactc tgtaaaccta ctagctgaat tgacaccagc tgatcaggtg cccacggcaa      1500
     taaaatttct taaaacacga ctcacaggca aagctagatt gggtttgcct gaagcaataa      1560
     ataccataga tgccctagca caagatgtaa aacgtagatg tgcaagcaaa atcacgcccg      1620
     aaaatatcac tgcgaaacta aaagcagtaa gacagaaggg ctcagccgaa actttctgtg      1680
     aagaggtgga ttctcttacc accaaactga aagcagtata cattcagagc gacattccgg      1740
     agccagttgc aaacaatatg gcaacaaagg caggagtgga aacattggtg aatgggacca      1800
     actcccagga aactaagata attttgaagg cagggacctt cacagacata aaagacgcaa      1860
     tacagaaggt attggaaaat accaactcga gtgcgactca agtcctttca tttaacgcta      1920
     gaggtaacaa ctaccaccaa gaccaaaatc aaaggttccg caataatcgt ggcaaccgac      1980
     gattttcgaa caacagggga caccaccaac attcccaaaa tttcaggaac cctcagcacc      2040
     agcaaccaca atctaaccaa tatccaagat atggtggtta ccagaacaat cgtggtcgac      2100
     gcggaagatc caacttccaa tcagggcgca tttacgccgc aagcgcacaa ccgcaacaag      2160
     tgcaattaac catgccaaca aacatgccta tggcaataat gggaaaccag cagcaaggaa      2220
     tgatgatgcc cacagcgtca aaccccatgt tatttgctca aaataacatg ccttttttag      2280
     gacaattggg tcaaaacatg accccacaaa attaatctac acagtcaaca cgtcagcagc      2340
     aaattttgtc acactgttcg taggaatggc aagctgcaaa tgtacattta ttgtagatac      2400
     aggagcagag atatccatta ttaagcaagg caagctgaat gccacgcaaa tttttaatcc      2460
     taacatagta tttaaagtca caggaattac agatggcgtc accactacga ttggtgaagc      2520
     caattccaac ataacattct caaatggttt aaccgtaaat cactcattcc aattagttgg      2580
     aaatgagttc ccaatcttga ccgatggaat attaggtcga gatttctttg taaaatataa      2640
     gtgtacgtta gattacgaaa gttggttact caattttaat tttaataatt gtatggtctc      2700
     agtaccaata gaagataaac ttaataacag tatcttgatt ccagctagat gcgaagttat      2760
     tagaaaactt ccaaatttta gcgttaccac cgattcagtg gtactgtcag aagaaatcat      2820
     tccaggagtg ttttgtggca acactatagt ttcgccaaac accccttttg ttaaaataat      2880
     aaataccaca aataaacaag tggctataac taattttaag ccaaaagttg actccttaaa      2940
     tgagtacaac tgtataaaat cacgaaacag taggaataaa tcccacgaga agataagagt      3000
     agaaaaaatt ttctcggaaa cccacatgga acaagttccg caatatgcga agcagccact      3060
     cagaaacttg attgaagaat tttcagacat attctgtcta ccaggagaaa aactagacac      3120
     caataacttt tattcgcagc acatcccact gaaggatact gcaccagtgt atataccaaa      3180
     ttacaagtgt atacattcac aacaacagga aattcaggac caggtaaaga aacttctaga      3240
     ggaagatatt atcgaacctt ccgtatcttc ttataactct ccaatccttc tagtaccgaa      3300
     aaaatcagac gacgcttcaa agaaatggag acttgtcgtc gacttcagac aacttaataa      3360
     aaaggtgctg gcagataaat ttccactgcc acgcatcgac actattttgg atcagttagg      3420
     aagagccaag tactttagta ccctcgatct tatggccgga tttcatcaga tccccttgga      3480
     tcaggagtct aggaagtaca ccgctttttc cacacctaat ggacattttc atttcaaacg      3540
     actaccgttt gggttgaatg ttagcccaaa cagcttccaa agaatgatga acatcgcaat      3600
     ggctggactc actccagaat gtgcttttat ctacatcgat gatattgtag tcacaggatg      3660
     ttctacagat catcatcttg acaacttaag aagaattttc gagcgattaa ggcattataa      3720
     cttgaaactt aatgccagta aatgcaagtt ttttagaaca gaagttgcat acctaggtca      3780
     taacataact gacagaggaa tcctaccaga taattccaaa tttgatgctt tgaaaaattt      3840
     tccaacacct acaaatgcag aagaagcacg cagatttgta gctttctgca actactacag      3900
     aaaatttgtg ccaaacttcg cacacattgc taaaccttta aacgatttac aaaggaaagg      3960
     ttcaattttc caatggacat cagaacacga gcagagtttt cagacactca aacagtacct      4020
     gatgtcaccc caaatattgc gttacccaga tttttctaag aagtttatac taaccacaga      4080
     tgcgtcagat atagcatgtg gtgcagtact ctcacaaatg tatgaagaag gagattttcc      4140
     aattgcgttt gcaagcaaaa gttttacccc aggagaacgc aataagccaa taattgaaaa      4200
     agagttaaca gcaattcatt gggctgttaa ctacttcaag ccatatctgt atggaaacag      4260
     gtttttggtc cgaacagacc atagacctct ggtctaccta ttcaatatga agaatcccac      4320
     gtcgaaactc accaggatga gagtcgattt agaagaattc gattttgata tcgagtttgt      4380
     agcagggaaa gcaaacgttt gtgcggacgc gctctcacgc attgttatcc ctactacttc      4440
     agagcaacta aaagctttaa gtgtccttat ggttaacaca agagccatga cgaagaaaaa      4500
     agctaacatg aacgaatcaa cggatcaagg agaagctagc agcgagactg atcacctcac      4560
     cgcatggcaa accgaaaatc cctctcagac cactaaactt cttaaacttg gttgtgaagt      4620
     acaccataat cagttgagaa tgacaatttt taaccataat tacaaaaaaa tcctaggaac      4680
     aactaatatt acactaatgc gcgctaatgg aagccaaacg ctagagtttg cgcttctgga      4740
     aatcggaaaa atacttggcc aatatggaag aaatttaatt gctttatcaa tggaggataa      4800
     cttattcaaa tatatttccc tgcatacctt aaaggaaatc gcaaatactg ccatttccaa      4860
     ctatcaaatt attttattca agcctccaaa agttataaca aagcaggaag atataagaaa      4920
     catcctacaa cagtatcata ctacttcggt aggtggtcat gtaggtcagc atcgacttta      4980
     ccttaaaata agagaatatt ttaaatggaa aaatatgaaa actgacatca caaactacgt      5040
     tagaagttgt gaacaatgta aactaaataa ggtatttaga catacgaagg aagcagaagt      5100
     cataacgacg actccttcaa aacctttcga agttgtatca gcagatacag ctggaccttt      5160
     cactagaaca aataatggaa atcgatatat tcttaccata caatgtaatt taagcaagta      5220
     catcgtatta attcctattc cttccaaaga agctaataca attgcgaaag cacttgtaga      5280
     aaattttatt ctaaaatacg gtcaattctg tgaattacga acagaccaag ggaccgaata      5340
     caataaccaa attttagaac aaatatgtaa aattttggaa ataaaacaaa cgttcagtac      5400
     cgcatatcac cctcagacca ttggtgcgct tgaacggaat cacagatgtc ttaacgaata      5460
     tctgcgatgt ttcgttaacg cccaccaaac ggactgggat gattgggtaa aatactatga      5520
     attttgtttt aacacaacgc cacacacgga acacggattt acaccttacg aactaatttt      5580
     tggtcataaa gcaagtctac ctcaaaattt aatcagacac tcatcatccg aaccaattta      5640
     tgatatagat caatattata acgaattgag atttaaaatt cagaattcaa atcagatagc      5700
     aaacaataat ttgattcaaa gtaagacaac tagacagcag aatagcaata tgacaacaaa      5760
     tccaatcaaa ttagagatag gagatacagt ttacttaaca aacgaaaacc ggaaaaagtt      5820
     agatcctttc tacataggac catttgcagt aacggaaata aacgaaccaa attgtacaat      5880
     agtcaatata aaaacgaaca aatcatcaat tgtacacaaa aataggctaa taaaatcata      5940
     aaaagcaaaa aaaaaaaaaa tttgtaaaat gtctcataaa atcaacattt ttcttaaaaa      6000
     gggagg                                                                 6006
//
ID   Gypsy-656_AA-LTR repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-656_;
KW   Gypsy-656_AA-I; Gypsy-656_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-411
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-411
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2074-2074 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 411 BP; 158 A; 83 C; 67 G; 103 T; 0 other;
     tgtagcatat tagcatacta gataaattaa tagttcagtt cagaaatccc caagtcataa        60
     aacaattaga agaaaacctt tttttagcaa accatccaaa aacccgaccg tcataaacct       120
     tcagtttata acggcatagg taaaaaccca aacaataaag cataacagaa aaacccaaca       180
     acatttgtcc aatgccaagg gcgctacccg ctcttgagct tgagctaccc gttaagcata       240
     aacagtaaac agcaaaagag aaatttgtaa actagtattt aaggctttag gtaaataaag       300
     tctcttcagt ctttagatgc aaattcagat aagcggacat gctgtccgta ttgtgtgatg       360
     tgtttaatca atatcacaaa cccgtgaaac cgtgaaggtg aacctagtaa a                411
//
ID   Gypsy-657_AA-I repbase;    DNA;    INV; 6109 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-657_;
KW   Gypsy-657_AA-I; Gypsy-657_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6109
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6109
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2045-2045 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 6109 BP; 2287 A; 1134 C; 1052 G; 1635 T; 1 other;
     tggcgacctg tgagcagtga tttttgtgat acgaactttg aaccaatcaa tactgaaaat        60
     gggaaagtca aactccaaga tagtgaacaa cagcggtgat ccacaaaatg tgataattaa       120
     ccaattagaa gaacactcgg aacaccacac tgcgcacgac ctaaaactga cagtgattct       180
     ggtagcggtg gtacttcaat ttctgctcat ttgctaccta ttattaaaaa aacattcccg       240
     caagcaagcg ctcaaagcag cgcgaagtgt ggcccagttg caacatgtgt gaaaaatact       300
     aaaatgggcc gacggaatgc gttgtgtttg gtttcagtcg gaatgaataa tgagtgacaa       360
     aaacagttaa aatatccagc acagtgaaag catccataat gtttcgaact ggttctgcga       420
     aagttttgaa tggcaaaact agtgacttct aacagtggca atgatttgcg aaaaaaaagc       480
     agtgcctaac tgaaaaaaaa aacaacagtg tgcattcaac atgttcagaa ctgaaggtac       540
     gaatgttgtg aatcaacagc agaaaatccc ttcaatagag aatagttcaa gttcaattca       600
     atgctaataa attcaaacag tgttgagtga attcgttttt aaaaatgata ttgacgcaga       660
     ctgttgctcc atcagaaaat aagtgaacct ttttatgaaa cattgaacag ctgaaaacag       720
     tgacatgtga aaaaaaatac ttactaaaag attcatgaga gaagccgtac accagaaaga       780
     tgaacccaga agaaggatcc caaccagcat gtcgagacga atcataatgt aagttacttt       840
     aagttttctt atctttgtaa aaagtataat cgtataatca tgacctatca atgggtgtga       900
     cacagaataa gctaatcatt gaagaaggaa taaaagtgtt aaattcaatc ttaagaaatt       960
     tgaataaagc tccaaatagg agatacagaa gattaacgct agaattaaaa ttgaataaag      1020
     ctaaattgac ttacaataaa attataaaca ctctagctga ggtagaagct gatcttgatg      1080
     aatcagaatt caattttctc aacaaatgct ctcgacaagt atacggtaat atacatgtct      1140
     taatatcgtc caagttggaa tgggctggaa cacacaaaat tagtttgttt tcgataacat      1200
     atgcaattct ttttataaac aaattaaaac aaaaatccaa acttgtgaag cctgtaatac      1260
     aaccaaaaat ggcaaaaata gatatcaaaa cgggtacctc actcattgaa atatatgaag      1320
     gtaacccgga aaagttggac aattttcttg attcagtagc gcttttcgtt gacttagtcg      1380
     acagcgcaaa cgcagaatct acaccagcgg cacaagcagc agctaaagct gtcgcgattc      1440
     gttttatcaa aacacgtctc gctggtgctg caagacaggc agtaccagaa aacgccacat      1500
     taaacgaact tgtagatgcc ttaaagcaaa attgctcttc aagaaaaacc gccgataaca      1560
     ttttagctaa gctgaaaaat gttaagcaat cttcaaacac agaagcattc tgcaatgaga      1620
     ttgaaaaact tactcaagaa ctaaaatcag tttacataaa caacaagatc ccgattgatg      1680
     tagcgacaaa tatggccacc aaaagtggtg ttgatgcact aatttctggg actaaaaacc      1740
     cagacactag gattattttg aaggctggca cgtttaccaa attaaatgat gccatccaaa      1800
     aactgcaaga aaatgaagtg tcgacttctg ccggcccaca agtgttctat caacaaaaga      1860
     actggggtcg tccatctaac agaggccgtt catcttacag aggtcgttcc tcttacaggg      1920
     gaaatgatcg acgaaatttc cgatcttcac caccacatca gcattcccaa cgctatgcat      1980
     acccacaaca gaactacagc cgaccacaaa gaggttttaa cagacctttt aatagaaata      2040
     cggtttacta tgcacaaaac aatcaggctc aaccagggca gcagaataat agtgcgaatc      2100
     cgcatgcgcc tgaacaaaat agaaataatc atcatgctca tccccaacag caacaagtac      2160
     caattggaca aacacaacat tttttataaa tccatcgagg acagttttta ctgttaactt      2220
     gtcctcgcct agttatgtac atataaatgc agagttttca gattckcaat gtcaactcat      2280
     tgttgattct ggctctgaaa tttctctaat taagtctaat aaaattagaa caaatcaaat      2340
     atacaatcct tttgataaat gtaaaatatc tggaatagga agtggtgtta ccgaaactct      2400
     tggaaacact tcaacatata ttaattatga taacattaga tttaatcaat cattccacat      2460
     tgtaaatgat aatttcccaa taccagcaga cggcatccta ggaagagatt ttctaaccag      2520
     gtaccggtgc tgtatagatt atgacagttg gctactgtcg attaatgtca atgatgatat      2580
     aattactatt ccaatcaatg acaggaataa cagaaacatt attccgccac ggtgcgaaat      2640
     aataaaatta atgcacttac cacaaatcgt tgaagacagt gtaataatag caggtgaaat      2700
     tcaccctggt gtattttacg caaattcaat tatcagtaaa actagttcgt ttgtcaaatt      2760
     tttaaataca acggacgatt ctgtcgcggt tccaagtaat ttcaacccgc aaatattccc      2820
     actaaccaaa tatgatgtaa acggcaatct aaaggccaat aagtcgacga aaaatagaaa      2880
     acgaaaatta ttgaatgaat taaagcttga tcatttagaa cccagcttaa aagccaatgt      2940
     agaacagctt tgtacgcagt ataatgacat tttttcactc gatgacgaca aattgtctac      3000
     gaacaatttt tacaagcaag agatcaaact aaatgagcca acttcggtat acattaaaaa      3060
     ttacagaata ccggagtgcc acaaggctga aattgaacga caagtaaaga aaatgctaga      3120
     tgatggtata atccgcaatt catattcttc atttaactct ccggttttgc tagtccctaa      3180
     aaaaacatcg gaaggagata agaaatggcg attagtagtg gacttccgcc aattgaataa      3240
     gaaaatcctt ccggacaaat ttccattacc acgagttgat gaaatccttg ataatttagg      3300
     ccgagcgaaa tatttttcga cgcttgactt aatgtcagga tttcaccaaa tcccactgga      3360
     agacgaaagc aaaaagttca ctgccttctc aactggcact ggacattttg aatttaatag      3420
     actgccattc ggtcttaata taagtcctaa tagcttccaa cgcatgatgt cgattgcgtt      3480
     gagtggcctt ccatctgaat gtgcattcct ttacattgat gatatcatcg tagtaggatg      3540
     ctcgataaaa caccatatat tgaatctaca aaaagttttt gaccaactaa gaaaatttaa      3600
     tctgaaactc aatcctcaga aatgtcattt tttcaagagt gatgtaacgt atttgggtca      3660
     tcacatatca gaacagggta tattacccga taaatctaaa ttttcagtta tattcaatta      3720
     cccggtgccc aaaactgcag acgaaacaag aagatttgtt gctttttgca attattatcg      3780
     acgtttcatt cctaaattcg cagaaatagc ttgtccactt aacaaactgc ttcgaaaaaa      3840
     tgtaattttt aaatgggacg aagactgtca aaattcattc aacattctaa agaacgaatt      3900
     actttcaccg cgtattttga aatttccaga ttttaaacgt gacttcatac tgacaacaga      3960
     tgcctccaaa atggcttgtg gagctgtcct tgctcaacgg tatggtgata cggaatttcc      4020
     tatcgcattt gccagtaagg catttacaaa aggagaatct aataagtcca cacctgagca      4080
     agagcttcta gccattcatt gggctattac acattttagg ccgtatcttt atggtcgaaa      4140
     gttctatgtt aaaacagatc acagaccgct gatccattta ttttctatga aaaatccatc      4200
     ctcgagacta actcgcatca gattagactt agaggaatac gatttcgaag ttatttatat      4260
     aaaaggaaag acgaatgtag tttccgatgc attatctcga atacaaatta atgcagaggg      4320
     tcttaaacaa ttgtacgtta taacacgtgc aatgaaaaaa aggcaaaatg gtgcaacccc      4380
     tatcagtact caagcacagg aacctgatca attccgagtg tatgagccac ttggtagcca      4440
     ggaagcattc atgctgccaa aattatcatt tgtgagaaac agtgataata ctttagatgt      4500
     tgtaatatac aagaaaaatt acaccaaagg aacagcttta ggcttcaaga ttccgataaa      4560
     cggaaataaa gaaacaatat taatgcatat gaacaatatt ttaaaagaaa ttgaaaatgg      4620
     ggcgcccacg ataaatgcta gttataccag agaaaatact ggacggaaca tacccaataa      4680
     gatagccatg gcaaaaagtg acataatatt caaatatcta agcatggatc tatttaagaa      4740
     aatcggtaat tgtattctaa ggaatactac cgtattatta tttaaaaaac ccaaggtctt      4800
     gacaagtcga gaccaggtaa ataatatact acaacaattt cataacttgc caacaggagg      4860
     acacttaggt attaaccggt tataccgaaa ggtgaaatct atgtatacat ggcctaatat      4920
     gaaaaaatgc attgttgaat ttgtcaatgc atgcacatta tgtaaacaca ataaacactt      4980
     tcctaatgtg aaaacaaaac aaatagtaac aacaacccca atgaaaccgt ttgacgttgt      5040
     gtctatagac accgttggac cgtttacaat gaccgaaaac ggaaaccgat atgcgattac      5100
     catgcaatgc gatttcacaa aatatgtgat aattgcccca ataccagata aatcagcgaa      5160
     taccgtagct agaactgtca taaataattg tatccttcaa ttcggtccca tgaaaagtat      5220
     caaaacggat caaggtaccg aatataaagg agtattcgat gaaatttgcg atcttcttaa      5280
     aattgaccac acatgctcta cggcatacca cccacagact attggtgcat tggaaagaaa      5340
     ccataggtgt ttgaatgaat accttcggat tttttccaat gaagcgagaa atgactggga      5400
     tacatggatg ccttattatg cgttctctta caataccact cctaacgtag atcatgatta      5460
     tactcccttc gaattagttt ttggaaggaa atgtaatact ttacaatcaa ctgatactaa      5520
     aattcaacct ttatacaact ttgactcata cgaaaaggaa ctaaaataca gaatgcaagt      5580
     agcacataca agagtcttag aggaaatcca gaaaacaaag agcaatagaa caaaattttt      5640
     aaacgaaaat ttacatacaa caccacttca agtcaacgat accgtttacc taaaattgga      5700
     aaatagacaa aaattagatt cactaaatgc aggtcctttc aaaattttag atttaaccga      5760
     gtctaatgca gtaataaaaa ttggtaataa aatatctaca gtccacagat caagattaat      5820
     taaacgttaa ttatttcaaa tatttgactc caacgttccc gagaggggga aggataaggt      5880
     atgaatgaga aatttatacg aacaaactaa aaaaaaataa aagaaaaaaa aataaaaaaa      5940
     aataggaaaa gacaaaaatg ttaaatcaca acatcagaag cgaaagatca tgtaaagaat      6000
     aaaagtgtat tttttaaatt gtttgtaaag gctcgaacaa tgctagttcc caaaatcaat      6060
     acaaaagaac aactcattgt attacgttgt tctccgctaa cggggaagg                  6109
//
ID   Gypsy-657_AA-LTR repbase;    DNA;    INV; 397 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-657_;
KW   Gypsy-657_AA-I; Gypsy-657_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-397
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-397
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2075-2075 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 397 BP; 130 A; 93 C; 56 G; 118 T; 0 other;
     tgtagtgtaa ttatttaacc ttaacatccc cacaacatta ttaaatcaaa tcgcttacgc        60
     ttagcaacgc tcaaccattt ttcattaaat cagcacttta tcatttccat agaattctac       120
     gttttgaagc tttctcacga ccataagtct tcaacggaaa atgtctccag tttcacagtc       180
     tacacgcgcc attctagttg cgctaagaat gcttacgtag tagaaaacca tacgtgggaa       240
     tatagtattt ttcgagtctc acctaatcca cattccatca atatgtaacg acagaactaa       300
     tggataaaat aaacgacact tgtgttttaa cttcaaaccg agacagatgt gtatcatccg       360
     aaatccacgg aacaattatt cgcgacggtt caccaca                                397
//
ID   Gypsy-658_AA-I repbase;    DNA;    INV; 4496 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-658_;
KW   Gypsy-658_AA-I; Gypsy-658_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4496
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4496
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2046-2046 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4496 BP; 1172 A; 1240 C; 1088 G; 995 T; 1 other;
     gtggcgactc gggtgcgcga gtttttgttt cgttttcgcg aagttaaaag tgaaaatcca        60
     aaatcgcgcc tcccacgcgg aaaaagcgca agcttccatc gccttcagag gacgattccg       120
     agatgtcgaa cggagacgcc caacaaggag caccgttggc catggatgca ctcatcctcc       180
     aggtgcttaa ccagcttcag cagcagcagc ttgtgacgaa cgagctcctt cgcaaccagc       240
     agcaatccaa cgagcagcag cgcgtgttca tccagcagca ggagaacacc cttcggaaca       300
     ttcaggtcca agttcctgcg aatcctgaat cgattctcga ctcgttggca tcgaacgtaa       360
     aagagttccg gtatgacacc gagaacagca tcaccttttc atcgtggttt tcgcggtacg       420
     aagagttgtt cgccaacgac gctgcacggc ttgacgatca ggctaaggtt aggttgctca       480
     tgcgaaagct cggcatctcc gagcacgagc gctattgcag tttcatcctg ccaaggactt       540
     cgaaggattt cacctttgcc gaaactgtaa ccaagctgaa gggacttttt ggagcttcgg       600
     aatcgctgat aagcaaacgt tatcgttgcc tccaaatcgc taaaaattcc gccgaggatt       660
     tcgtgacgta cacgtgtcga atcaacaaga cctgcgtcga atttgagttg ggaaatctct       720
     cggaggagca atttaaagtg ctgattttcg tctgtggttt gacgtcggaa gcggatgccg       780
     aaatccggac tcggttgctg gcacgaatcg aggaaaagaa cgacgttact ctcgaacagt       840
     tgtccgctga atgtcagcgt atgctgaatc ttcggcacga taccgccatg atcgaggctt       900
     ccaacagcac agtgaatgcc atcaaacagc gattccacaa acattcccga ccctggaaac       960
     attcctccag tccatcatcg tcgacttcgt ccagcgaagg caagaagaaa ttgccaccca      1020
     gcccttgctg gaaatgcgga tcgatgcact acgtgcgcga ttgcagattt aaagaccata      1080
     agtgttcagt gtgtaaccag tgtggacaca aagaaggtta ttgtgacagt gacaaaaaga      1140
     cccctaagaa gagggtgaag agacgatcaa gaaatgtcac agtagagaca aagactgttc      1200
     aagtgtcagt gaataatgtg cgagaaagaa gaaaattcgt tccggtcttt ctgaacggtg      1260
     tcgcggttcg attacagttc gactctgcgt cggacatcac cgttgtctcc agtgggacct      1320
     ggaagcagct cggacaacct ccaaccagac caccatcagt gaatgcgaag acagcatcgg      1380
     gcgatccttt gaacctgcta tcggagttcg attgctcgat caccatgaat gacgtaactc      1440
     tagtaggtac tatctacgtc gttccgcagg agctgcacat attaggcctg gatttggtgg      1500
     agaagttcaa gcttgatgcc gtgccgatga acgttttctg tcgccaggtg aacgattcct      1560
     cttcctccat ggtcgagcgg ctcaagaccg cttttccgca agttttcagc accagtcttg      1620
     gtcggtgtac caaaacaaca gtgaagctag acctcaagcc agaccagcgt ccagtgtttc      1680
     gacccaagcg ccccgtggcc tacgccatgt atcaagccgt cgatgaggaa ttggaccgtc      1740
     tagagcgctt gaagatcatc actcccaccg actactctga ctgggccgca ccgattgtag      1800
     tggtacggaa agcaagcgga gcgattagaa tttgcggtga ttattcaacc ggcctaaatg      1860
     acgccattca gcctcatcaa tacccgctac cactaccgca agacatcttc gtcaagctcg      1920
     ccaattgcaa ggtgttcagc attatcgaca tgtcggaatc atacctccaa gtcgccgtcg      1980
     atgaaccaac gagtacgctc ctcactatca acactcaccg gggtctctac aaggtgaatc      2040
     gcctggcgcc cggagtgaaa gctgccccag gagcttttca gcaactcgtc gacaccatgc      2100
     tggcgggact caagcacact tgcggttata tcgatgacgt aatcgtcggt ggagaaaatg      2160
     aggaggaaca ttggcagaac ctgaatgcgc tctttcagcg cctgcaagag tttgggttta      2220
     cggttcgctt ggagaagtgt tcatttgggc gcgagcagat aaaatatctg gcacacatgc      2280
     tcgaccagca cggaattcgt cccgatccgg cgaaagtaga ggccatcaag caaatgccgg      2340
     cgcccaagga cgtgtcggaa gttcggtcgt ttctcggagc cgtaaactat tacgggaaat      2400
     ttgtaccgaa aatgcgagct ctacgatttc cgttggatga actattgaag aacgatgcga      2460
     aatttgtgtg gacgtcacag tgtcagcaag ccttcgacgg attcaaaacc attctttcgt      2520
     cggatctgct tttgacccat tacaacccca accttgacat aatcgtgtca gccgatgcgt      2580
     catcagtcgg cttgggagcg accatcagtc atcgcttccc ggatgggtca ataaaagtcg      2640
     tccagcacgc ctcaagagct ttggcacctg cagagcgcaa ctacagccaa accgacagag      2700
     aagggttagc catcatttat gcggtaacca aattccaccg tatgattttt ggtcgtaagt      2760
     tcctgcttca aactgaccac cagccactac tgcgcatctt cggtagcaaa aagggcatcc      2820
     cggtatatac agccaaccga ttgcagcgct gggccctaac gctactctcc tatgacttca      2880
     ccatcaagta cgtggcaacc gaaaaattcg gcgacgctga tatcctttct cgcctcatca      2940
     accaccatgc gaaacccgaa gaagacttcg taatcgcatc cgtcacgctg gagtgtgata      3000
     tgaggtcagt agtatgtgat agttttaacg tgtttccttt gagttttaaa gcagtacaac      3060
     aaagcaccaa gtcggatccg gtgctcaaga aggtctacca gtacatccaa gaaggctggc      3120
     cgaagtccct agccagtaac gccgatcgag aacttgtccg tttcaacaac cgccgtgaat      3180
     ctctctccac agtgcaaggc tgcatcctct ttggtgaaag gctagtgatt ccaactcctc      3240
     tgcgcaagcg atgcctcgaa gaactccacc gagggcaccc cggaatacag cggatgaagg      3300
     cactttcgcg cagctacgtt tattggccat cgctcgacaa cgaagtggcc gattacgtga      3360
     aggcctgttc tccttgtgca ttgacagcga agtcacccgc agcagccaca cccataccgt      3420
     ggcctaagcc aatccgtccc tggcaacgag tgcatgttga ctacgccggc cccatcgacg      3480
     gtgactattt tctgctcgcc gtagattcct actcgaaatg gccggaagtc atccgcacac      3540
     gccgtatcac ggcgtcagca acgatcaaca tccttcgcag cattttcgct cgcctaggga      3600
     tgccagaaac gcttgtgtcc gacaacggca cccaatttag cagtgtggaa ttcgctcaat      3660
     tctgctcaac aaatgggatc gaccacgtaa ccactgcgcc attccaccca caatccaatg      3720
     ggcaggcgga acggttcgtc gataccttca agcgtgcgat taaaaaactc gaagaaggga      3780
     gaagttcaac cgatgaagta ttggaaacgt tcctgctggc ctaccgtagt actccaaacc      3840
     catcagcacc cgatggtctc tcgccgtcgg aaatcatgtt cggacgtcgc atacgcacct      3900
     gtctcgaact gctacgtccg scagccgagc gtcctccacc ggtaccacca ccggttgacc      3960
     agaagaagct aaatatgagg tccttcattg ccaacgacct tgtctacgtc aagatctacg      4020
     ccaagaacgc ctggaactgg attcccggca aaattgttga aaaagttgga caagtcatgt      4080
     tcaacgttct caccgaaact ggtcgcttgg tccggtcgca tctgaatcag ctgagaagtc      4140
     gagcatcatc cggtctcgat aatggtcccg aagtcaacaa gccgtcaaga cagaaacaac      4200
     ctccattgaa cgtccttctc gatgcttgga acccgtcatc cacgaaaggt tcaagcagcg      4260
     aaacaacagc tacaacttcg aacatcagcg acacgattcg gattccatcg ttatcaccac      4320
     cttgtccggt catgaattca gacctgacgt cctcgtcctc aagcaccaca tcttccagct      4380
     tcgagtcggc tgccgctagc acgccgacag tacagccaag attacttcgt cgctcttcca      4440
     gaccgagaag accgccagcg aggttcaacc tataccaacg gttctaaaag gggaga          4496
//
ID   Gypsy-658_AA-LTR repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-658_;
KW   Gypsy-658_AA-I; Gypsy-658_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-312
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-312
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2076-2076 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 312 BP; 82 A; 80 C; 60 G; 90 T; 0 other;
     tgttgagaca acggaacaga agcgttggga acactgcctc agcgcacaga ttcaccatcg        60
     ctttccagct gggctcatcg gtgacagcta catgctgcca cacgatagac gtcagaagca       120
     taaaccggat accgcaaatc atagttgtca tgctctattg tactgtgcct cttatcattc       180
     attcgagtgt atacttttaa cacgttaagt cgagtccttt tattaaaatt gtttgttcgc       240
     ttacgaacgc gtttttatct tattgatatg atccaccata tcacggccac ctcccactaa       300
     cgcgtcgtaa ca                                                           312
//
ID   Gypsy-659_AA-I repbase;    DNA;    INV; 4511 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-659_;
KW   Gypsy-659_AA-I; Gypsy-659_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4511
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4511
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2047-2047 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4511 BP; 1192 A; 1054 C; 1180 G; 1085 T; 0 other;
     gtggcgactc ggtattcgcg attttgtttc gttcgcgcgg ttaataagtg aacggaaaaa        60
     tcacgcctcc cacgcggaaa aggaaaaggt tggaagtgga tgaaagtccg gatcgatcct       120
     cttctccggt gaacatgagc cagcaacagc agcaagcgtt gcatcagcaa caaccgatcc       180
     ccacggatgc gttaattctg caggttctcc aacagttgca gcagcagcag ctcgtaacta       240
     accaacttct caacaaccat cgtgagacgc aggagcagca aaagctattc attcagcagc       300
     aaggtgatgc gcttcggaat cttcaagttc aagtgccgac ggggccagaa gcgattctgg       360
     attcgcttgc cggcaatata aaagaattcc ggtatgacgt cgaggccggc agcacatttg       420
     ctgcttggtt cgctcgatac gacgatctct ttgctcgtga tgctgctagg ttagacgatg       480
     ccgcgaaggt tagactgttg atgcggaaat tgggaaccac tgagcatgaa cgcttcatca       540
     gttttatcat gccaaaagcg cccaaggact ttacgttcga cgaagcggta gtcaagttga       600
     agagcttgtt cggtgctgcg gagtcggtgc ttagcaagcg ttaccgttgt ctgcagatat       660
     gcaagggggc gacagaagat tatgtttcat acgcatgtcg tgttaataaa tgttgtgtgg       720
     aattcgagtt aggaaagctg cccgaagaag aatttaaaag tttaatgttc gtgtgtggat       780
     tgaaatccga agctgatgcg gaagtgcgaa cgagacttct ttctcgcata gaggagcgcg       840
     caaacgttac gttagagcaa ttgtcaaccg aatgtcagcg attgctcaac cttcgacatg       900
     acacggctat gatcgaagga agtggaagtt cggtgaacca aatcaggcga caccagcggt       960
     tccagaagcg tgctagtccg agacaggaaa gttcgtcgaa gcctcagctt gcaagcagca      1020
     caccaaagag accatcaggt ccatgctgga gctgtggtgg aatgcattat agtcgggatt      1080
     gcagtttcaa gactcaccag tgtgcggact gcagtcggta tggccataaa gagggctatt      1140
     gtgcaagtgc gaagaaacca gctcctcgtc gttatttcaa acggaagtcc caaagcatta      1200
     cggttgagac gaagactgtg acagtatcgg tggatatggt tcgcggtaga agaagattcg      1260
     ttcccgtagt gttgaatggt gtgttcgtca gattacagtt agatacggcg tcggacatta      1320
     gtgtgatttc cgtggacact tggaagcgac taggaaaacc atcagtacgc tcgccgtcgg      1380
     ttaaagcgaa ggccgcctcc ggagacaatt taaagttagt gtcggaattc gattgttcga      1440
     ttacggtaaa cggtgtgact caagtcggta cggtttttgt agtgaatcgc gacctgcata      1500
     ttttggggtt ggatttgata gacgctttcc agttggatac agtaccgatc agtgcgttat      1560
     gtaacaaggt cacgggttct cctaccctcg tcgaacgatt gaagactgag tttccggaag      1620
     tattcagtac gtcgcttggc aagtgcacga aagcaaccgt caagttagag ttgaagccga      1680
     atcaacaacc agtgttccgt cctaaacgcc cggtggcgta ctcggtgtat caagcggtgg      1740
     atgacgagtt ggaccgtctc gagcggatga agataataac cccagtggac tattcggaat      1800
     gggccgctcc gattgtggtc gtccgaaaag cgaacggcaa tattcgaatc tgtggagatt      1860
     actccactgg gctaaacgat gcgttgcagc cgaaccagta cccccttccg ctaccgcagg      1920
     acatttttgt aaagctcggc aactgcaaag tttttagtat catcgatatg tcggaatcct      1980
     atttgcagtt ggaagtcgat gaaccctcta gcaagatgct gtctataaat acacaccggg      2040
     gcatttacaa agtaaaccgc cttgcgcccg gcgtcaaagc agcaccaggg gcgttccagc      2100
     aggttgtcga tgccatgtta gcaggtctga agcacacctg cggctaccta gacgacgtca      2160
     tcgtaggtgg taaagacgaa gaagaacatt ggcagaattt agtggcatta tttcggcgcc      2220
     tccaagagtt tggcttcacg gtgcgtttgg aaaaatgttc gtttggtcag gcccaaatta      2280
     agtacctggg tcatttgacg gatcagcatg gagttcgacc agatccggcg aaggtcgaag      2340
     caattaggca aatgcctgcg ccagtggatg taacaggagt gcgcgccttt ctgggagccg      2400
     taaatttcta cggcaaattt gtgccaaata tgcgatccat tcgatatccg ttggaccagt      2460
     tgttgaaagc gggaacaaag ttcgagtgga ccgccgattg tcaagccgct tttgacaagt      2520
     tcaaggaaat attgtcgtcc gacctgctat tgacacatta taatcctgct ttggagatca      2580
     ttgtcgcagc tgatgcgtca tcgataggtc ttggtgccac gattagtcat cgttttccag      2640
     atggatcgat taaagttgtc cagcatgcat cgagagcgct tactccagct gagcggaatt      2700
     acagccaaat agatagagaa gggctggcta taatattcgc tgttactaaa ttccaccgta      2760
     tggtgtttgg tcgaaaattt cggctacaaa cggaccatgc accgctgctt aggattttcg      2820
     gggccaagaa aggtattccc gtttatacag ccaaccggct gcagcggtgg gcattgatgt      2880
     tgctcatgta tgacttcacg atcgaatatg tagccacgga taagtttggc caggttgatg      2940
     ttttgtctcg tctcataaac caacacgcta aaccggacga agactacgtc atagcagcca      3000
     tttcgcttga ggatgatgta aggtcagtag cttttgactc gcttaacttt ctgccactca      3060
     attttagcga tgtccagcaa ggcaccaaaa aggacgctgt ccttggaaaa gcactgagat      3120
     tcatcgagga aggttggaag acagcgcctc cgtcaaccgc agatcgtgag ttgcacaagc      3180
     tgtacaatcg tcaagattcg ctaacaactg ttcagggttg cctagtcttt ggtgagagac      3240
     tcgtcattcc gaaggctttg cgaaaacggt gcctggacca actacatcaa ggacaccctg      3300
     gaattcaaag gatgaaggcc attgctcggg cgtatgtcta ttggccttcc atcgacaacg      3360
     agatagcaga ttttgtgaaa gcgtgtcccc actgtgcacg ggttgctaag tctccagcgc      3420
     aagccgcgcc tgttccttgg ccgaaatcag aacgaccatg gcaacgcgtg catattgatt      3480
     atgcaggacc tcttgacggt gaatattttc ttctggtggt agattcacac tccaagtggc      3540
     cggaagtagt gcaaacgtcc cggatcactg ccccggctac cataagaatt cttcgcagtc      3600
     tcttcgctcg gctgggaatg ccggaaacac tagtgtccga taacggcact cagtttacta      3660
     gtgcggagtt tgccgagttt tgctgcacta acggcattca acatatcacc accgcaccgt      3720
     tccatcccca atccaacggg caggttgagc ggtttgtaga cacgttcaaa cgtgcaacga      3780
     agaagattcg cgagggaaag gggtcaatgc aagaagcctt ggacctgttc ttgttgacct      3840
     acaggagcac accgaaccca tcggcaccta acggtgcatc accagcggaa gcgatgttcg      3900
     gtagacagat ccgaaccaat ttagaactgt tgcggccacc atcaaaacgt catcaagaag      3960
     aagtaggaga agaatcggca aaccgccggt catttcaacc gaacgatcag gtctacgtaa      4020
     agctgtatag caaaaacatc tggagctggg taccaggaac gattttggaa agaattggga      4080
     aagttatgta caacgtgtgg aatgaaaaac gtaatttggt tcgctcacac gtaaaccagc      4140
     taagaccccg tacctcaaca gactttgaat gtacatctga gtcaatcaag cctagaaatc      4200
     ctctgcctct cgatgtcctg ctatcagcat ggaactttaa ggaaccaagc aagtctgcct      4260
     catctgtctc tacaaatacg ccgaggccga acgcgatcgg catgatgggt gttccttcgc      4320
     tatcacctcc gcctgaagac actactcatc atccagttgt ttcgaaccac acaaggcaag      4380
     cttcaaccgt agcctccaac atcgagtcat caagttcaag cacatctatg gtacaacagc      4440
     ctcgacgttc ttcgcgcatt agaaggatgc ctgcgcggtt cgacgtgtac cgtcagtttt      4500
     aacgggggag a                                                           4511
//
ID   Gypsy-659_AA-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-659_;
KW   Gypsy-659_AA-I; Gypsy-659_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-272
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-272
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2077-2077 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 272 BP; 67 A; 62 C; 60 G; 83 T; 0 other;
     tgttggggcg aatggagcag agctgggagc acggtcttat accgaatgac ccctcgcttt        60
     accactgggc tctatcctga cagctggact gtcatgcgac tgatgccatg tcagttttgt       120
     ataaaaatgt cattacgact tccgcctact cgagtaacac cattctatgt accggtacct       180
     tttaataaag tagtatagtt ttaattattg aatccgcgta cgttttattc gggttatagt       240
     tatcacggcc acctgtagac gcgtattcaa ca                                     272
//
ID   Gypsy-65_AA-I repbase;    DNA;    INV; 4450 BP.
XX
AC   supercont1.236;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_AA_;
KW   Gypsy-65_AA-LTR; Gypsy-65_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4450
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.236; Positions 1368227 1363778.
XX
CC   Positions [1816-2355] - Reverse transcriptase
CC   Positions [3433-3909] - Integrase core
CC   'CTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..4098
FT                 /product="Gypsy-65_AA-I_1p"
FT                 /translation="MSTSEEYVSEGDHGDGNKNISSSSERNDKFVTLRKKH
FT                 RMSRQAEQDALALRAELDEKVAEIERLQQRLTIATRATASPQDRIAVRRPD
FT                 FRELRELVSRFNPKEATCLSAQEWIQEIESTAAHYDWDDATKLHCARLNLE
FT                 GSSKLWWAGVQNEVNTWALFSQKLVRAYPSARDPIYYHNQMTKRRKMRDET
FT                 VEEYVYSQVALGKRAGLSEAVIVKYTIAGLGEFVSKCRVQLGGKIETIDEL
FT                 ISQLKWMEGMVDTTPELTTTRVTEKKREKVVNCYRCNTPGHKAVACPNSPN
FT                 IAGRCCFNCGVSGHMTKNCPTPKPRQGPSNMQVVDEENNFVKVVEVGGIKL
FT                 NALVDSGCKVSTIQCRFADKVGDSEVASTTLVGFGGKKVNVDRVVRSCVKL
FT                 DDVEISVKLNVVPNWVQSTAIILGRDMLNQEGVVMVHRNGRVEFRRDSDAG
FT                 QARMVEVQSRKYESMYTIDSSVQCSEIIADDLNVEGPSEEILKVVNQYRSC
FT                 FAKNMNELGVAKGTEMKIVLSDQEPVYVKPHRMEYAREAALSGIVEELIDA
FT                 GIVEESNSPYNSRVVMVPKKDGSFRMAVDYRLLNKKTVKDRYPMPDIEWCL
FT                 NKLSGAEVFITVDLYSGYYQIPVAEDSQECTAFSTRDGHYHFLRMPFGLAN
FT                 GCSVFQRAMNQLTGKLRKEGIVAYIDDLVIGGKSVEEVLAKFEKLLEVLQE
FT                 SGFTINLKKSHFFKTSVEFLGFEVSKNGIRPGAMKTRAVEEFPTPESVLQV
FT                 QQFLGLAGFFRRFIPRFSIVAAPLFTLLKKDTKFEWKSEQMIAFEKLKKSL
FT                 SERPLLVLFDPKCDIELHTDASKDGLAGILLMRTEEDWRPISYYSKRTSEA
FT                 ERKYHSYELEVLAVVASVERFRHYLIGTFFVVRTDCSAVRDTYSKREMNAR
FT                 IGRWFLKLTEYDFRLEHRPGSSMRHVDALSRNAIEDEKSVDQVLCDMLSIE
FT                 VSNVDFLVALQRQDARLCDIIDVMGRDPLSDEERQIQQNYRLEQHRLMRVV
FT                 DGVKCFVVPTRVRWRLVHTYHDEMGHFAEEKVLNRLREKFWFPKMRKYIRS
FT                 YIEACPQCAFHKSKGGRPEGYLHCVPKEPVPFSTVHMDHMGPFVRSARGNS
FT                 YVVLLICGFSKFVVIRAVRSTKTGPVLNFLGDVTAMFGTPSRIVTDRGTAF
FT                 TAKIFEEYCRVNAITHIKTAVGSPRANGQVERANRTVLNSIRCMVGEHNMR
FT                 WDEQVPKIQWSVNNMPNSTTNLSPSALVLSYKPRDIHQNTIVLALHDEVNN
FT                 VLESPHERKQQAMQAIERRQRLQKQYFDTRRLSLQTPIRSVIWC"
XX
SQ   Sequence 4450 BP; 1323 A; 814 C; 1236 G; 1077 T; 0 other;
     agctgtagac aggattcaca gccgcgcgtg gtacgattcg ggtttcgatc gcggacaaag        60
     gttctaggac agtattgttc tgggcacaat agtgtcagac aaaagaacca cgtgaaaatt       120
     tcgatacaca tggctgtcgc gggtatctaa aagtgaccgg taattttgag tgcaccatat       180
     cgtatgtcca cttctgagga atacgtgagt gaaggtgacc acggagacgg taataagaac       240
     atatcgagct ccagtgaacg gaacgataag ttcgtaactt tgcgaaaaaa gcatagaatg       300
     agtcgacaag ctgaacaaga tgcgttggca ctgagggcag agttggacga aaaagtggct       360
     gaaattgagc gcttacaaca acggctcact attgccacta gggccacagc aagccctcaa       420
     gatcgcatag cagtacggcg tccagatttc cgcgagttga gagagctggt cagtaggttc       480
     aatccaaaag aagctacatg tctttcagcg caagaatgga ttcaggaaat cgagtctacg       540
     gccgcgcact atgactggga tgacgcgacc aagttgcatt gtgctcgtct gaatctagaa       600
     ggatcgtcta agttgtggtg ggctggtgta cagaacgaag tcaacacatg ggcgctattt       660
     tcacaaaagt tggttcgagc gtatccatca gcacgagatc ctatctacta ccacaaccag       720
     atgactaaac gtcgaaaaat gagagatgaa accgtagaag aatacgttta ctctcaagtt       780
     gccctcggaa aacgtgctgg gttatctgaa gctgtgatag tgaaatacac gatcgctgga       840
     ttgggagaat tcgtgtcgaa gtgccgagtg cagctgggag ggaaaattga aacaattgat       900
     gagttgattt ctcagttgaa gtggatggag ggcatggtag atacaacgcc ggagttaacc       960
     actacacgag taaccgaaaa gaaaagagaa aaagtagtta actgttatcg gtgtaatacg      1020
     cccggacata aggccgtagc ttgtccgaac agtccgaaca tagctgggag gtgctgtttt      1080
     aattgtggtg ttagtgggca tatgacgaaa aactgtccga cccctaagcc aaggcaggga      1140
     ccctcgaata tgcaagtggt agatgaagaa aataattttg tgaaagtggt cgaggtaggt      1200
     ggaatcaaac tgaatgctct ggtcgattcg ggatgtaagg tatccaccat ccaatgtcgc      1260
     ttcgcggata aagtcggtga tagcgaggtg gccagtacaa cgttggtcgg cttcggaggc      1320
     aaaaaagtga acgttgacag ggtggtgaga tcgtgtgtaa agcttgatga tgtggaaata      1380
     tcagtgaagc tcaacgtggt tcccaactgg gttcagagca ctgcgattat tttgggacgt      1440
     gatatgctca accaggaggg cgtagtgatg gtgcatcgca acggaagagt agaatttcgt      1500
     cgtgatagcg atgctgggca agctagaatg gtagaggtac agtctcgaaa gtatgagtcg      1560
     atgtacacca ttgacagtag tgtgcagtgt tcagaaatta tagctgatga tttgaacgtt      1620
     gaaggaccaa gtgaagaaat tctgaaggta gtaaaccagt accgatcctg cttcgcgaaa      1680
     aatatgaacg agttgggggt cgcgaagggt accgaaatga agattgtgct gagtgaccag      1740
     gagccagtgt atgtgaagcc gcatcggatg gaatatgcga gagaagctgc gctgagtggt      1800
     atagtggaag agctgataga tgctggtatt gtagaagagt cgaattctcc gtataatagc      1860
     cgggttgtaa tggtgccgaa aaaggatggc tcgttccgaa tggcggtgga ttatcgccta      1920
     ttaaacaaga agactgtgaa ggatcgctat cccatgccgg acatcgaatg gtgtttaaat      1980
     aaactgagcg gagcagaagt gttcattacg gtggatctct attcaggata ctatcaaata      2040
     cccgttgcag aagacagtca agagtgtact gcgttttcaa ctcgtgacgg gcactatcat      2100
     ttccttcgga tgccattcgg gttggcaaat ggatgctcag tgttccagag agctatgaat      2160
     caactgaccg gaaaactccg gaaagaagga atagtggcat atatcgatga tctggttatt      2220
     ggtgggaaaa gcgtggaaga agtgttggcc aaatttgaaa aacttttgga agtacttcag      2280
     gaaagtgggt tcactataaa tctcaagaag tcacatttct tcaaaacatc cgtggagttt      2340
     ttgggtttcg aggtgtcgaa gaatggaata cggccaggtg cgatgaagac tcgtgctgtt      2400
     gaagaattcc caacgccgga gagtgtgcta caagtacagc agtttctggg attagcggga      2460
     ttcttccgta gattcatccc acgattcagt attgtagcgg cacctctatt cacgctactg      2520
     aaaaaggata cgaaatttga gtggaagagt gagcaaatga tcgcgtttga aaagctgaag      2580
     aaatccctaa gtgagcggcc tctgttagtg ttgttcgacc cgaaatgtga tatagagctc      2640
     cacacggatg cgtcaaagga tggcttagcc ggaattttgt taatgcgcac agaagaggat      2700
     tggcgcccaa tcagctatta cagcaaaaga acatcggaag cggaacgaaa gtaccatagc      2760
     tacgagttgg aggtgttagc ggtcgtggca agtgtggaaa gattccgaca ttacctaatc      2820
     gggacatttt ttgtggtgcg aaccgattgt agtgcagtga gagacaccta ctcaaaacgt      2880
     gagatgaatg ctcgaattgg ccggtggttt ctgaagctga ccgagtacga ttttcgacta      2940
     gaacataggc ctggcagttc tatgcgacac gttgatgctc tgagcagaaa cgcaatcgaa      3000
     gatgagaaaa gtgtagatca agttctgtgt gatatgttat ctattgaggt gagcaacgta      3060
     gatttccttg tggctctaca acgacaagat gctcgcttgt gtgacatcat cgatgtaatg      3120
     ggaagagatc cgttgagtga tgaggagagg caaattcagc aaaattatcg attggagcag      3180
     cacagattaa tgagagtagt ggatggagta aagtgtttcg tagtgcccac aagagtacgt      3240
     tggcgactgg ttcacacata tcatgatgaa atgggtcact tcgccgagga gaaagtgttg      3300
     aatcgattac gtgagaaatt ctggtttccg aagatgcgca agtacattcg ctcttatata      3360
     gaagcgtgtc cacaatgtgc gttccacaaa agtaaagggg ggagaccaga agggtattta      3420
     cactgtgtgc cgaaagaacc tgtcccattt agtacagtac acatggatca catggggccg      3480
     ttcgtcagat ccgcgcgagg aaattcgtat gtagtgcttt taatctgcgg attttctaaa      3540
     tttgtggtta tccgagctgt gcgttcgact aagactggac cagttttgaa ttttttgggg      3600
     gatgtgacag caatgtttgg tacaccaagt cgcattgtaa cggatagagg cacagcattt      3660
     actgccaaga tttttgaaga gtactgtcgg gtgaacgcaa ttacccacat caagacagct      3720
     gttgggtcac cgagagcaaa cggtcaagtg gagagagcca accggaccgt gctaaattcg      3780
     attcgatgta tggtgggaga gcacaacatg cgatgggatg agcaagtgcc gaagattcag      3840
     tggtcagtta acaatatgcc aaactcgact actaatttat cgcctagtgc attggtgttg      3900
     tcctacaagc cacgagatat acatcagaac accattgttt tggcgctaca cgacgaggtg      3960
     aacaatgtat tggagagtcc acatgagcgg aaacagcagg caatgcaagc catcgagaga      4020
     aggcagcgtc tacagaagca gtatttcgac acgcgacgtt taagcctcca aacacctata      4080
     aggtcggtga tatggtgtta gtggagcgag accttactgc gatgggccat agtcgtaaac      4140
     tcgaagccag atacaaaggc ccgtatgtgg tgaaaactgt gttggacaac gatcgttacg      4200
     agctagaaga tctcccagga gtgcgtagat cgaaccgact cagaacaaca gtttatgcag      4260
     cagatcgtat gaagcaatgg tgccaattag tagatgtagg cgatgaagat gatgaagttg      4320
     atggagaatt aacagatagt gaagacgttt aataccaatt gaacttattg tatgaaagtt      4380
     tttgaaaaaa aaaaaatatt aagaattgaa ttacacctaa tttgaaatca ggtgaatctg      4440
     ggtgtccgat                                                             4450
//
ID   Gypsy-65_AA-LTR repbase;    DNA;    INV; 267 BP.
XX
AC   supercont1.236;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_AA_;
KW   Gypsy-65_AA-I; Gypsy-65_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-267
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.236; Positions 1363777 1363511.
XX
SQ   Sequence 267 BP; 63 A; 52 C; 72 G; 80 T; 0 other;
     tgtaaatcta ttagaaagtt ggtgctatcg ggcaggcaac caatacttat acgtttctca        60
     ttttgggggg cttcaacgct tcggtgaaat aaattgagtc agtttagtta cagcaagcaa       120
     acgagctagt tcgcttttgt gctgcgatcc gaaatacccc cagttatcgt agggtctgtg       180
     attccggtaa gtcgtcggga agtaagtctc gaggttctgt ggtcatcgtc gaaggttggc       240
     caagttctgc gtcggacgta gtttaca                                           267
//
ID   Gypsy-65_AnFu-I repbase;    DNA;    INV; 2646 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-65_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-2646
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2949-2949 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..2645
FT                 /product="Gypsy-65_AnFu-I_1p"
FT                 /note="retropepsin and reverse transcriptase
FT                 (fragment)."
FT                 /translation="MERLVEEFTRVGLVRKCEMAGLATSGNKEDLAKRIID
FT                 AGITLEAVLEQNPVEDDANATGYLDAEVGSVVDAPKPAIIHTPVQSYSFRD
FT                 VEDGIEPYGKDLTKDIRAWFEDFEGVAKMALWSEDQMFIMCRRKMVGIAKS
FT                 FLATEKGVSSYPVLRSKLIKEFEKIIRSGDVHRRLMARRKTHKETMLEYVY
FT                 EMQRIARDADIDECSLIEYIVDGVTHETRMRASLYRTASLTELKQELLFLE
FT                 RAEAKRTSEKGSTRVESKGQRKCYNCGDVGHEAKKCVKEENPKKCFECGGV
FT                 GHRAKECESRAKGPKCYACGDRGHVSKNCPKNRNANQNPATANLVFGENCG
FT                 TVEMRIGQCNFKTLFDTGSEYSILANSAMKTIGSLCLSKSDMVFNGFGGKK
FT                 TKALGRVETEVCVDGQNYPEMSFYVVPDNCSIYEAILGRDALSKMDAEVTV
FT                 EGVKLKPRVSRSEEQCEVLCASALTINDANEVTIHHQYQKEIERMIDDFKS
FT                 KEEVNSNIPRKCPVELEIVPDGQIIPFKHAPSRLSCLQEQAVNKQVDEWLK
FT                 NGIVRVSTSNFASRVVVVKKKDGSNRVCVDFRKLNGMVLKDAFPIPVIDDV
FT                 LAKLQAAKWFSVMDLENGFFHVKMKNKSDDQLREILEKEWYEDHDYVRQEL
FT                 RKDARIAIEQAQRRYKHQFDKKRKPASGYKLEELVAIKRTQFVAGRKLASE
FT                 YLGPYEVVQVNRNGRYRVRKVGQGEGPLETSTSDDNIKLWAYALTEEGDDE
FT                 DQGSDLNQDGR"
XX
SQ   Sequence 2646 BP; 814 A; 474 C; 746 G; 612 T; 0 other;
     tctggtgtca gaagtgggat ataccgattc cctaaaaaac tgttagctgt gtgcggctgg        60
     tcgagtgaga gtgctgtgtg cgcaaaaata tcgacctgcg cgtgtgtgaa tacaccgatt       120
     tccggaaagt gtccggtatt gtaagctgtg tgcggctggt cgagtgagag tgctgtgtgc       180
     acaaaagtat cgacctgcgc gtgtgtgcga taccgactcc cgggaaatat acggtgcgtt       240
     ggctgtgtgc tgttgttcgt gtgagggtgc tgtgtgcgct ggaaaaaaac gattgacgcg       300
     tgcgtgtgcg taatctgtgt ccgtctattc gggcgtgtgt actgtggtgt tactgaacaa       360
     tggaacgatt ggtggaagaa tttacgcgtg ttggcctggt gaggaagtgt gaaatggctg       420
     ggttggccac gtccggcaat aaagaggacc tggcgaaacg gatcattgat gccggaatca       480
     cgttagaagc cgttctcgag caaaatcccg tcgaagatga cgcgaacgca acgggttatc       540
     ttgacgctga agtcggatcg gtagtagatg cgccaaaacc tgccataatc cacacaccag       600
     tgcagtcata ctcattccga gatgtggagg acggaattga gccctatggt aaggatctaa       660
     caaaggatat ccgagcgtgg tttgaggact ttgagggagt agcgaaaatg gctctctggt       720
     ccgaagacca aatgttcatc atgtgtcgac gaaagatggt tggcatcgcg aagagtttcc       780
     tagcaacgga aaaaggtgta tcatcttacc cggtgttacg atccaagctg attaaagaat       840
     tcgaaaagat aatacgctca ggtgatgttc atagaaggct aatggctaga cgaaaaacgc       900
     ataaggaaac catgcttgag tatgtgtacg agatgcaacg catagctcgt gacgccgata       960
     ttgacgaatg cagcctaatc gagtatattg tggacggcgt gacccacgaa actaggatgc      1020
     gtgcgtcatt gtatcgaacg gccagtttga ccgagctaaa gcaggaattg ttattccttg      1080
     aaagagccga agccaaaaga acatcggaaa aaggtagtac acgggttgag tcaaagggtc      1140
     aacgaaagtg ttacaattgt ggcgatgtcg gacatgaagc aaagaagtgc gtaaaagaag      1200
     aaaacccgaa aaaatgcttc gagtgtggtg gtgttggtca tcgggccaag gaatgtgagt      1260
     cccgggcaaa aggaccaaaa tgttatgctt gcggtgatcg cggccacgtg tcaaagaatt      1320
     gtccaaaaaa tcgaaatgct aaccaaaacc cagcgactgc taacctcgtt tttggtgaaa      1380
     attgtggaac tgttgaaatg cgcatcggac aatgtaattt caaaacactt tttgataccg      1440
     gcagtgaata tagcatatta gcaaatagtg cgatgaaaac aatcggtagc ctttgtttgt      1500
     caaagagcga catggttttc aacggttttg gtggaaaaaa gacgaaagct ttgggccggg      1560
     tagaaacaga agtgtgcgtc gatggacaga attatccaga aatgtccttt tatgtggttc      1620
     cagacaattg tagtatctac gaagcaattt tggggcggga tgcgttgagt aagatggacg      1680
     ccgaggtaac cgtggaaggc gttaaactga aaccacgagt gagcaggagc gaagaacaat      1740
     gcgaagtatt gtgcgcgagt gccttgacga taaacgacgc aaacgaagta acaatacacc      1800
     atcagtatca gaaagagata gagcgaatga tagacgattt caaaagtaag gaagaagtga      1860
     attccaatat tccaagaaaa tgtcctgttg agttggaaat cgttcccgat gggcagataa      1920
     taccatttaa gcatgcccca agcaggctgt cttgtttaca ggaacaagca gttaacaaac      1980
     aagttgatga gtggttaaaa aatgggattg tgcgcgtctc tacatcaaac ttcgcgagtc      2040
     gagtcgtagt ggtgaaaaaa aaagatgggt caaatcgcgt gtgtgtcgat tttcggaagt      2100
     taaacggaat ggtattaaaa gatgcattcc caataccggt gatagacgac gttttagcga      2160
     agttgcaagc ggcaaaatgg ttctcggtaa tggacttaga gaatggtttt ttccacgtaa      2220
     agatgaagaa caagagtgac gatcaattga gagaaatttt ggaaaaggaa tggtatgaag      2280
     atcatgatta tgttagacag gagttacgaa aagacgctcg tattgccata gaacaagcgc      2340
     agcggcgcta caaacatcaa tttgataaaa aacggaaacc tgcgtcaggg tataagctag      2400
     aagaactagt ggctatcaag cgaacacaat ttgttgccgg gagaaaactc gctagcgaat      2460
     atctgggacc ttacgaggtc gtacaagtaa accgtaacgg gcggtatcga gttaggaaag      2520
     tgggacaagg cgaaggaccg ctagagacaa gtactagcga cgataatatt aagctttggg      2580
     cttacgcgtt aacagaagaa ggagatgatg aagatcaagg gtctgatctc aatcaggacg      2640
     gccgaa                                                                 2646
//
ID   Gypsy-65_AnFu-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-65_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-194
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2877-2877 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 194 BP; 66 A; 36 C; 48 G; 44 T; 0 other;
     tgtaaaaacg aaaaatgtta gttgggggaa gaccacagga tcaccctgta tcgaaggagc        60
     gcagaaagaa ccccgacagg gtataaaagg ggatcattcg caaaggaaca ggaagaacga       120
     aaaaggttgt gaaataaagt tggttgctcc cgtaaattcg tccagcgact ttgtaccttt       180
     ttcctctttt taca                                                         194
//
ID   Gypsy-65_CQ-I repbase;    DNA;    INV; 5949 BP.
XX
AC   AAWU01038188;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_CQ_;
KW   Gypsy-65_CQ-LTR; Gypsy-65_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5949
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 509-509 (2011).
XX
DR   Genome; AAWU01038188; Positions    8033    2085.
XX
CC   Positions [2218-2721] - Reverse transcriptase
CC   Positions [3790-4266] - Integrase core
CC   'ATTT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..2047
FT                 /product="Gypsy-65_CQ-I_2p"
FT                 /translation="MMEVNPIDLSNEELNFELELRGVAGLGPMTHRIKCTT
FT                 LEKVMQDDLKSGRVYASSSHVVDGSSEIRICHSRIKRLLPQIITGIERNNI
FT                 AFLEPIVSRLNHYYNRLTLVSPPSADMREEWTGVRDTIARTKRQIFRILYP
FT                 ANQSTNQYSVSSVSNSTAPAHNSTAVSSGSARQINQLSLAGAVGGDSSGME
FT                 RGSSASARGTSTGAIPKRTSDQSVNDLLLLSGQASAQARNAAAVAHGGQGL
FT                 PVDPRPHSLGRGRGRPIFNPNHPQRDPPPLPPNLGRDITPPPRLQNDDAEY
FT                 NELRDRVLCDLLRRERQPAEGARIPKAIHNWPFKFRGTKDSTNLNTFLDRV
FT                 ESFAFSEGVNNAMLLRAIKHLLQDDALDWYSRALNEGELDTWENFKLMIRQ
FT                 EYLSSHYGQLLREEASSRYQGANEKFQKYYRDISALFRFVQPPMSQEDKFF
FT                 ILKKNMNPEYATILASARPQTIQDMVEVCNAYDDTRTLLTHQRRTPIPHSS
FT                 LLEPNLATPSGSQRSQANNAGWQRFGGRVNAIDSREENQDRRGRYEAASAD
FT                 QRESLDEDDWTDQIEQLTQQICAIRTQFQKRSNEQYRRGGNYAGQRWQSHQ
FT                 QQPVAEEQQPMLARNNHQQPNRIRNPCENSTSRNSGS"
FT   CDS           2014..4638
FT                 /product="Gypsy-65_CQ-I_1p"
FT                 /translation="MRELNKQEQWQLNKAIAKFPCSREGMIGRTTKYVHRI
FT                 DIGEAKPKKQRVYVMSKYVLDEVNKEVDRMLALDVIEEAMFSPWNNPLVAV
FT                 KKKTGQYRVCLGARYLNSIMQNEGHPIPQIANIINNLGGCRYISSIDLKDA
FT                 FWQLPLEKESRPMTAFTVPGRGHFQFKVVPFGLCTASQALARLMTHLFADL
FT                 EPHVFHYLDDVIICSRNFDEHLRLLNIVAERLRDANLTISPDKSKFCRSEM
FT                 KYLGYVLNENGWKVDEGKVACIVKFPRPENRKDVQRFLGLCGWYRRFIANF
FT                 SRIAVPLTELTKAKVKFKWTPAAEDAFVKLKSLLVSAPVLAMPDYSKPFNI
FT                 ACDASDTAIGAVLAQEIDGEEHPIAYFSQKLSASERNYSVTERECLAVIRA
FT                 IEHFRGYVEGVRFTGYCDHSALTYLRSIKNPTALMCRWILRLNAFDFNIEY
FT                 RKGSCNIVPDALSRIVASLVFAVKAMDDSWYKRLKQSVDKQPDKFPDFKIA
FT                 SGELYKNCRCKDEFGNTVHKWKKAVPLGERADVISKFHDSVTGAHLGFQKT
FT                 WQKLQNFYYWPKMQQDVGRYVRSCAVCKASKAPNTKMMPTMGKLKPARVPW
FT                 ELISIDFVGPLPRSKDGNTVLLVIVDWVTKYVIAHPMRSADTCKMVAFLEK
FT                 EVFLRYSRPRIVLSDNGKQFVSASFKSLLARHKIEHMTTAFYCPMVNNAER
FT                 VNRVLVTCIRALLDEDHRSWDENLPSIVAAINSAKHEATGVSPHFANFGRD
FT                 LILHTDLYKQQDLNAPDDPKLAQDLRLAKLKRIHEFVFQRIKNNHEKSKQR
FT                 YNLRTRVVSFKVGELVWRKLFSLSSKADHVNQKLNPKYVPAIVKAVLGHNL
FT                 YELEDISSGKRGRYHAKDLKSD"
XX
SQ   Sequence 5949 BP; 1626 A; 1508 C; 1624 G; 1191 T; 0 other;
     aaatggcgcc caactaaaaa acccacacta ggcctaggct agaattgtaa aaccattgcg        60
     tgcttattcg tagaatatat gttttttgtt gttcttggga taaatttttg cttttttgaa       120
     gacttttgag agttcagcga agatgatgga ggtcaatccc attgatctga gcaatgaaga       180
     actcaacttt gagttagagc ttcgtggtgt agcaggcctt gggccgatga cgcacagaat       240
     taaatgtaca acgttagaga aagttatgca agatgatcta aagtcgggga gagtttacgc       300
     ttcctcgtct cacgtggtgg atggctcgtc ggaaataaga atatgtcatt cgcggatcaa       360
     gcgattgttg ccacaaatta tcaccgggat agaacggaac aacatcgctt ttctcgaacc       420
     aatcgtgtcg cgcttgaacc attactacaa tcggctcacc ctggtttcgc cgccgtccgc       480
     ggacatgcga gaagaatgga cgggagtgcg agacacgatc gcgcgtacga aacggcagat       540
     attccgaatt ctttacccgg ccaaccagtc aacaaatcag tacagtgtca gttcggtttc       600
     aaactccaca gcgccggcgc acaacagcac agctgtcagc agcggcagtg ctcggcagat       660
     caatcagcta tcgctagcag gtgcagttgg gggcgattcg tcgggcatgg aaagaggaag       720
     ttctgcaagt gcgcgaggaa catctaccgg agccatcccg aaaaggacat cggaccaaag       780
     cgtgaatgat ctgctactcc tgtcgggtca agcttcggcg caagcccgca acgcagcagc       840
     agtagcacat ggaggacaag gcttaccggt cgacccaaga ccgcattcgc taggtcgagg       900
     acgaggacgg ccaatcttca acccgaatca tcctcagcgc gatcctccac cacttccacc       960
     gaatctagga cgagacatta ctccacctcc aagactgcag aacgatgacg cagaatacaa      1020
     cgaactcagg gatcgggtac tgtgtgacct gcttcgccgc gaacgtcaac cagccgaagg      1080
     cgcgcgaatt ccgaaggcaa tccacaactg gccattcaag tttcggggaa cgaaagactc      1140
     gaccaacctt aacacgttcc tggatcgagt ggaatcattc gctttttcgg aaggagtcaa      1200
     taacgcgatg ttgctgcggg cgatcaaaca tctgctgcag gacgatgcgc tggattggta      1260
     cagtcgtgcg ctgaacgaag gagaattgga tacctgggag aacttcaagc tgatgatccg      1320
     ccaagagtac ctgtcgagcc actacggcca gctgttgcgt gaagaagcgt cgtcgagata      1380
     ccaaggagca aacgaaaagt tccaaaagta ctaccgggac atctctgcgc ttttccgctt      1440
     cgtgcaaccg ccgatgtcgc aggaggacaa gtttttcata ctgaaaaaga acatgaatcc      1500
     agagtacgca accatcctag cgtcagcaag gccgcagaca atccaagaca tggtcgaagt      1560
     ttgtaacgcc tacgacgaca cgcgtacgct tctcacgcac cagcgtcgaa cgccaatccc      1620
     gcacagctcg cttctcgagc caaatctggc cacacccagc ggttcgcagc gctcacaagc      1680
     aaacaacgca ggatggcaga ggtttggcgg cagggtcaac gcgatcgaca gtcgggaaga      1740
     gaaccaggac aggcgaggga gatacgaagc agcaagcgcg gaccagcggg aaagcctgga      1800
     cgaggacgat tggacggatc agatagaaca actgacgcag cagatttgtg cgatccgtac      1860
     acagtttcag aaacgcagca acgaacagta cagaagagga ggaaactatg cgggacaacg      1920
     ttggcaatcc catcaacaac aaccggtagc agaagaacag cagccgatgt tggcaagaaa      1980
     taaccatcag caaccgaacc ggatccggaa cccatgcgag aactcaacaa gcaggaacag      2040
     tggcagctga acaaggcgat cgcgaagttt ccgtgtagcc gggaaggcat gatcggacgc      2100
     actacaaagt acgtgcaccg aattgacatt ggagaggcga aaccgaagaa gcagagggtc      2160
     tacgttatgt cgaagtacgt gctggatgag gtcaacaagg aggtcgaccg gatgctcgcg      2220
     ctggacgtga tcgaagaagc aatgttcagt ccctggaaca acccgctggt ggcggtgaag      2280
     aagaaaacgg gccagtatag agtgtgtctg ggcgcgcgct acctgaactc gatcatgcag      2340
     aacgaagggc acccgattcc gcagatcgcc aacatcatca acaacctggg cggctgcagg      2400
     tacatctcgt cgatcgactt gaaggacgca ttctggcagt tgccgctgga aaaggagtca      2460
     agaccaatga cagcgttcac tgtaccggga cgtggccact tccagttcaa ggttgtaccg      2520
     tttgggttgt gcacagcgag ccaagccctg gcgcgcttga tgacgcatct gttcgccgat      2580
     ctcgagccgc atgtcttcca ctacctagac gacgttatca tctgttccag gaactttgac      2640
     gaacacctta ggctgctgaa catcgttgcc gaacgactga gggacgcaaa ccttacgata      2700
     tctccggaca agtcgaaatt ctgccgcagc gagatgaagt acttggggta cgtcctaaac      2760
     gaaaacggtt ggaaggtcga cgaaggcaaa gtagcgtgca ttgtgaagtt tccgagaccg      2820
     gagaacagaa aggacgtcca acgtttctta ggtctttgcg gttggtatcg tcgctttatc      2880
     gccaacttct cgcgcatcgc agtgccgctc accgagctga cgaaagcgaa agttaagttc      2940
     aagtggactc cggccgccga ggacgcattc gtgaagctga agtcgttgct agtgtcggcg      3000
     cccgttctgg ccatgccgga ctactcgaag ccgttcaaca tagcgtgtga cgcaagcgac      3060
     acggccatcg gtgctgtact cgcgcaagag atcgacggag aggaacaccc gattgcatac      3120
     ttctcgcaga agctgtccgc ttcggagcgc aactactcag tgacggaaag ggaatgccta      3180
     gcggtcatca gagcaataga acactttcgt ggctacgtag aaggagtgag atttacgggg      3240
     tactgcgacc actcagctct gacgtacttg cgatcgatca agaatcctac cgcgctgatg      3300
     tgcagatgga tcttgcggct aaacgcgttc gatttcaaca tcgaataccg aaaaggatcg      3360
     tgcaacatcg ttcccgacgc gctctcaagg attgttgcgt cgctggtgtt tgcggtgaag      3420
     gcgatggacg acagctggta caagcgactg aagcagagcg tggataaaca gccggacaag      3480
     tttccggact tcaaaatcgc tagcggtgaa ctgtacaaga attgtcgctg caaggacgag      3540
     tttgggaaca cggtgcacaa gtggaagaaa gcggttccgt tgggcgaaag agcagacgtg      3600
     atcagcaagt tccacgattc ggtgaccggt gcgcacttgg gattccagaa aacgtggcaa      3660
     aagctgcaga acttctacta ctggccaaag atgcagcaag acgttggtcg ttacgttcgc      3720
     tcctgtgcgg tctgtaaggc cagcaaagcg ccaaacacca agatgatgcc gacgatgggg      3780
     aagctcaagc cagcgcgcgt gccctgggaa ctcatctcga tcgattttgt aggtccactg      3840
     ccgaggtcga aagacgggaa cacggttctg ctcgtaattg tagactgggt aacgaagtac      3900
     gtgatcgcgc accccatgcg aagcgctgac acgtgcaaga tggtggcgtt cttggagaaa      3960
     gaagtctttt tgcgttattc caggccaagg atcgtgctca gcgacaacgg aaagcagttt      4020
     gtgtcagcat cgttcaaatc gcttctcgca cggcacaaga tcgagcacat gaccaccgca      4080
     ttctactgcc cgatggtcaa caacgccgag cgcgtcaaca gagtgctggt cacctgcatc      4140
     cgggcactgc tcgatgagga tcaccgttcc tgggacgaga acttgccgtc gattgtagcg      4200
     gcgataaaca gcgcgaagca cgaagccacc ggggtaagcc cgcactttgc gaatttcgga      4260
     agggacctga ttctgcatac cgacctgtac aaacagcaag atctgaacgc gccggacgat      4320
     ccaaagctcg cacaggactt gcggctggca aagctcaagc gaattcacga gttcgtcttc      4380
     cagaggatca agaacaacca cgagaagtcc aaacagcgat acaacctgcg cactcgagtc      4440
     gtgtcgttca aagtgggaga acttgtttgg cggaagctgt tctcgttgtc gtcaaaagca      4500
     gatcacgtca accagaagct caacccgaag tacgttccag cgatcgtgaa ggcggtgctc      4560
     ggccacaact tgtacgagct ggaggacatc tcgagtggca agcgagggcg ctaccacgcc      4620
     aaggacctga aatccgactg atcctagtat cccaaagcta tgtctgcaac caaaaggttg      4680
     cgaaccagat cgacaagaac aacaaacacg caaagcggta aacatgtcgt ctgaggaacg      4740
     aggaggagaa aaagtcatca agctgttttg cagcggtatg acccagccag ctatgtagcc      4800
     ttcacaccac gagaggagga caagaccaaa caacacacgg tgccaagtac agcacaagca      4860
     accgggatgg tgaggaacca gcaggagagt ccggaacgtt gaagcgcgcc gaggacaaaa      4920
     gtagcagtac tggctgatcg tgtagtgcag tgccgaacga gacaagcctc gtgcagaggt      4980
     tctggacgca gcacgcaccg aacgcaggaa gacagcaact ggagcagctt tgacgcagga      5040
     cagccgctgg agaactgact atccgggaac gctgacgcgg gaagaagagc ctggacaaca      5100
     aaacaccact accaccaagc acaagcgcac aatgggccct gagcgcaagc ttcggtgaga      5160
     aacaaccaac cagatcaaac aattcttgct atgagcgtac cagctccaaa cttctcaaaa      5220
     caccttcggg gtacaaacat tctctcgcct ggaccggtac attcgtccag tgttgtcacg      5280
     atctagctca ctcattggtc ttcagattgg tcgttgaggc atcaccatga cacttccatc      5340
     aaaagcaacg cgaatctagg gcgcggacgt tcagccgggc aaccgctgaa tttaaccctt      5400
     agccggactc atggtgatag gagatgggga aatcctctca aacctccgga aatcgaccac      5460
     tctccgacac tgtcgacatg tcgtttgaga gcgtagtgcg gatcgcttcc cgattcagtc      5520
     actagaatta gcaaagttat cccatagtta gtattacttg ttacccgttt ttcgtcatat      5580
     cgatatctat tagtcgttag atttcagtta ataagtaaaa cattagctgt aagtctggat      5640
     cgatgtgcca ttgtagcaag agttggaaca acaaaaaact gagctggaga cactttgggc      5700
     tggtaaagtt agccagctgg tcactttctg tgtagagtaa gtctacagca tcgggttcgt      5760
     ttatgtttgt aagctgtaca tgttttggag agccgcgggc tttcgtgtct tagttagctt      5820
     tgagtttagg gcattgtgtc catgaccagt aaagtctcca gcacactttt tagggaaagt      5880
     gaagttttaa gaattttccg tgtgggtctg ccatcccaca cggaaaattc tgccgcaatg      5940
     gcagtgttg                                                              5949
//
ID   Gypsy-65_CQ-LTR repbase;    DNA;    INV; 1516 BP.
XX
AC   AAWU01038188;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_CQ_;
KW   Gypsy-65_CQ-I; Gypsy-65_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1516
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 510-510 (2011).
XX
DR   Genome; AAWU01038188; Positions    2084     569.
XX
SQ   Sequence 1516 BP; 394 A; 393 C; 427 G; 302 T; 0 other;
     tgtggcaatt atgtagatta gtcccaaatg tgtagtaatt agtaagttat tgtaatcaaa        60
     acaagcaaac gccgcgcagc gtgcatgtgc aaaaacagaa aaaacccctc gctcgaagcc       120
     aaattcacca cacgccaatc gggcaacact acacgcacac aagcgtccgc aaccatttcc       180
     gccgccagcg gcaaagtaat gctgttcgcg tctcgaaagg agaaggtcgt ggaaaaagac       240
     ctccgcgtgt gtcgcacgat tttggaccgc acgtgcggat tcctcgcggg agattgttgg       300
     gccttcgttc ggcggctgaa accgcgcaat cgtcgtgagt tgcgcatcgg tgggagctcg       360
     gtggccactc gaactggacg gatttgtccc tgaagacgcc gcaaagtaag ccacgttttg       420
     acgatcagac tcgcccggag aataagtcat cggtcaaagg taattcgcaa aatctgccta       480
     aagtccaccg actcacaagg attaaccctc ttcgcagcgc gccaactccg aaccaatctc       540
     tgcaatccac ccgaagggag gtcccgccgg aagaggaatc aagcaggtaa aagaatgaga       600
     gcgttctgct cagaatagtc gcgctaaccg tagaaaatca tccacagtga tcgctgtgcc       660
     aatctcgctg tgggaatctg tgtcgcgcaa gacccatctc cgaagaacgc cgccaaaagc       720
     aaggtaaaca gttgcactaa ggtcccgcag cacagttctg acactttgcc ttcctcagac       780
     ctgaaaacat ccacacggtg gcagccagtc cgtgtgcaac aaaaggagga agcgcaacac       840
     gaacacgcac acaccatcaa ccagaacgca aaaggccccg gaaaagggtg agaggaaaaa       900
     agggaccgtt gtagcaaccg gccactttcg ttgtttcatt tagggccttt tcggtgggcg       960
     ctcgacttcg gctgctggag gctggtgcac gattgctggc gcgcgacgga acatcccgtc      1020
     ggtaggcgga cggtgcggta cgagtcgccg ttccaacacg gcgtacgtgc gtcattgagg      1080
     gcgctgggcg agacaacgct aggcgttgtt cgcgagggcg cagatgagga gcagcctgcc      1140
     aagctgtggt cgcacgtggg catgctgtaa cgcgtggcgg tcaagggtga actcacgagc      1200
     cggcgggcac gccaacggcg gaatgcgggt tgcggcaaga gtgagtgcta gaaattaagc      1260
     gggtgcgcac ccagaagaat aagagcccaa agggcgagaa gaagaagcac acgcgcgcga      1320
     agcgccatct ttgcgcatgt ttcgctaggc ttaggcacac acacgcacgc acatttgtac      1380
     cgtttttttg aggaaataac atgttttgag cacatttttg ttgggttttg ttgattagtt      1440
     atggtgcagc ctgaatgtcg cttctttacc tgccaatttt gagatttacc gctttagttg      1500
     tgaaaatagt ggaaca                                                      1516
//
ID   Gypsy-65_DEl-I repbase;    DNA;    INV; 7279 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_DEl-I;
KW   Gypsy-65_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7279
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7029-7029 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 7279 BP; 2310 A; 1563 C; 1779 G; 1625 T; 2 other;
     gaattggcgc ccaacgaagg attcttcgca tccttagagc taggactttt aacatctgaa        60
     gattttttgt tttacgtatt aaaaggttac gatttcaaaa atcggaatac cggatgtagg       120
     gcatatctga aaaattacat gctatacata attttcaatt tttccgaaca aagatcaaaa       180
     atagtttgtg tcgacaccta aaattcctct ccgcaggtat agttaattta attgtttttt       240
     tgtacatata aagtccccaa cttcagcgac agtctgaatt gagaaggcct ctcaatcgga       300
     actttgtctc agaatagccg tgcgactttg tgactctttt taatatccag taaaatcatt       360
     tgtctttgtt ttattaatag aaaaatttaa tgcgttgtaa ctgaaaattt tatagtcctt       420
     atataatatt atcaaatcac gtgcaagacc gacatagcat ttttagggaa caaacttaaa       480
     ttttttttgg gttttctctg gccgacgcta tccgcttgaa tcaggcaagg acccggtcgc       540
     tcgagaggtt cgagtccaga ggaaaccgat tgaccaagag gggggagggg gcgaacagac       600
     caaatccgta caaaccgacg ctatccgttt gaaccaggca agaaccaggt cgctcgagag       660
     gttcgagtct gtacggattc caacaataca agggcgggag gacggaatct atctctctgg       720
     ccgacgctat ccgcttgtac taggcatgaa ccaggtcgct cgagaggttc gagtccagag       780
     agagaggaaa cagggaggca atttctttcg tctgtctcaa ataaagctct agtcgtctgt       840
     ctgtgagcga gtctacctgt ttccgacgac tgggagggag ggggtttcgg acagttcctt       900
     ctacggggaa tcagcactcc ggtggaggct gtagtcctgg gaagaggtca gaaggacatg       960
     aatggaactg gtgtctccgg tggagaccag ttgaatccta tcataaaatt cacttattta      1020
     gggacctttt taataacttc ttgggggctt aatttcggac ggtttcttga cccataaaca      1080
     acttccaatg ccagcgaacc cgatttaaaa atttctgtat tctcttcata atacaattgt      1140
     caaataaaac tgctgttgta tgcaaaaaca atcaagcagc gtaaaaaagt gaacgaaaac      1200
     acatttgtcc agtttttttg agtcgcgtct tggctcaagt gtctttgtcg tcgtcattca      1260
     agttggtaat ttgaagattt acctcaatta tttttaattt ttatattttt ctgatttaac      1320
     aaaaaaaaag tgtggcaggc gtgtgccact atcaaggttg gttattgttt acttattatt      1380
     taattacttc ggcacgagcc aaaaccttga aataagaaga taggtcagta aatggcaggg      1440
     aagaggaaaa aggtaacgtt gacaataccg cctactagga ctgcaagggc ttcaacctta      1500
     gccgcaagac aggcctggag agccagacaa accgtgacaa ctagcgatca acaggcacag      1560
     gaacagtcgg tcagctttgg cagcaagcta gataatttag gaagcctggc agattaccac      1620
     agttccacca tggaggagtc gacaggagct gtagggggtg aaaactacta cttaggaccg      1680
     ccacaaggaa ggtccagcgt gctacccaat acaggagcac ggtcacgaca gtcggagtca      1740
     gaaagcaggc tggagcgaat gatgtctgcg ttgatcatgc aaggcaacga gttaagggct      1800
     acagtcgcaa cccagattac ggaattaaac acccagataa ttaatctgca aacaaaagtg      1860
     gcagaaatga gtgaatcaca atcaggtaat tcacaaacaa ccggagacac gcctgcacaa      1920
     agcagcactt ctcggccggc accgtcgagc cgcggtgagc gtcaacttaa caccgaaaca      1980
     ggagtttcgg ggtcagcacc gccgccagaa cttaattcca tggaccaaca taatcagaat      2040
     gactctggca gacgaaactg caacagtgca tgggagatat cgggagctga gcaccgacca      2100
     acagagaacc agaacgttag attggacaag tggaatctta aatttgatgg gaccagccga      2160
     gggatgtcaa tagaaagttt cctcttccga gtagatcgca tgaaagcact gtatgggtat      2220
     acagatgaac aggtattccg agaatttcac tgtttactca ctggctccgc cagcaaatgg      2280
     tattggcaaa tgcttgaaga caaagcggac gaccattatt ttgggtacca ctcgttaacc      2340
     cgagcgatga ccagagcctt ttcgacatcg gagaacgact atgtcaccat aaaagagtta      2400
     atggaacgac ggcagggata taacgagagt ttggaggatt atatttctgc gatgcacaat      2460
     ctgcagttta aactaagaaa taagattcca gaatccaacc tggtggagat attgaaggag      2520
     aaccttaatt cgcagatggg agcctttttg ttggcgtcaa gcatatcgac attagccgag      2580
     tttaagaggg aaggaatacg ggtcgaaaaa tggttgaagg acaagaggtc gcgcccgcgg      2640
     cacgttaacg aaatcataaa tgaatcggaa gaaggatatg aagccgatga ctaccaggtg      2700
     gaggcttttc agaacaaccg gccaccgaag ggagctggaa tggtaaagcc agcaagagga      2760
     aatccatttc gtcaaaactt ggacaagaaa accttggagt caatgggaac ggaacccgga      2820
     ggggaatgca cgtccccgtt tcatacatac ctttgctaca cgtgcaataa gccggcggac      2880
     ttttatcgcc accgtaaaag tgtagacgga acagggtgcc aagcccggtt ccatgcaacg      2940
     cagtgtcatt attgtggtaa aaacgactct tatcactcta ctcactcttc ttttttacgg      3000
     aaaagtctga tcggagagcc ggggaagacc ggtcagaaaa acgacacccc gagacaataa      3060
     aagaggcgac ctcaagcccc gcacagatat cgtctcataa gacatggtat cagcgtaagg      3120
     cagagtacga ggaggctcgc gcccgtatct ttaatacggc acaagaggaa gaagacgaaa      3180
     ggagtaaccg gaacaataag aaacttcgac acctgcacca gaccctggag actgcacggg      3240
     aacttaaaag aaaattagtt gcgtctatca tcagcctgaa aaatgacaac cgtctttttg      3300
     ccaagacaaa agtagacggc gaagaaattg tagccttatt ggatacaggg gcaagtgcca      3360
     actgcattgg caaaggagcg gagctgtttt tacaacggag gcagcataag atgcaaagat      3420
     taaccagaca aaacgtacaa acggccagtg gggggaaaac tcaagttaca ggcatgatca      3480
     ctctgccggt agaatgggaa ggcgaaacaa aagaattgga atttttaata gtgcccgccc      3540
     tacaacaaca cttttatttc ggaatagaat tttgggagga atttaagttg cctttgccgg      3600
     ggaaacgcct attagaggtt gcggagttag atacagtagc gcccgaagaa gagaatcccg      3660
     aacgccccga aactgcatac accccacaca aacttaccga acaacaggaa agcaccctta      3720
     aaaaaggtag tcaacacctt cccatcctgt acggagatgg gcttagggaa aaccgagtta      3780
     gaagaacatg tcatagaggt tacccaggag aatttaccta tcaagcagag gcattatccc      3840
     atctcaccag caaaacagaa actggtattt gccgaactcg accgaatgat aaaattaggg      3900
     gtaatagagg aaagtaacag tagttggagt tcccctgtga ccctagtaca aaagggcccc      3960
     aaaaatcgcc tttgcctaga cgcccgcaaa gttaatgccc ggactgtaaa ggacgcgtac      4020
     ccgttaccac acatagaggg tctactaagt cgtctacaag aaacgttctt tatatctgct      4080
     atcgacctaa aagatgcatt ttggcaaata ccgctggaag caaaaagtag agaaaaaaca      4140
     gctttcacag tgccaggacg acctttatac caatttaccg tcatgccgtt cggtctgtgt      4200
     aatgctgccc agcgcatgtg cagactgatg gacaaagtaa ttccagcagc attaagagaa      4260
     ttcgttttcg tatacctgga tgatttactg gtctgttctc caacttttga agaacatttg      4320
     gaaatgttgc gacaggtcag tgattgcctg aggagagcaa aattaacaat caatgtggca      4380
     aaaagtaagt tctgttacag ccaagctaaa tacctggggt atgtagtagg tggggggtgc      4440
     ataaaaaccg atccagcaaa gataaaggct attcaagaat tcccacagcc aatatccgct      4500
     aaacagatgc ggagattttt gggaatgaca gggtggtacc ggcgttttat acaaaactac      4560
     gctcaaacgg cagcaccgct tcatgaaagc ctcaaaaagg accgagtcag gaaatatgag      4620
     ctcgaggaag agggtattaa agcctttgag gcactgaaga ccagcctggt atcagcacct      4680
     gtgttaacaa caccggattt ttcaaaacct ttcacgattc agtgcgatgc atcgacgacc      4740
     ggagtcggag gggtgttgtt ccagacagat gaagagggtg gcgagcatcc tatcgcgtac      4800
     atgtcctcga aactggacaa agcccaaagg aactacagca tcactgaact tgaatgtcta      4860
     gcggcaatat tgagcatcag aaagttccgc ccatacgttg aaggaatgcc tttcaaggtc      4920
     ataacagatc atgctagtct aaagtggctc atgggccaga aagatttatc aggcagacta      4980
     gcaaggtgga gtttgaaact acaggccttt gattttgaaa tcgaacatcg gaaagggtca      5040
     caaaatgtgg tcccagatgc gctttcaagg gtacatatgg atgaagtaac agcgggactt      5100
     agggatgcgg cagagattaa catagaccta caatcagcag cgttccagtc gaaagaatac      5160
     aaagaattgg ctcaagctgt tgaaaaacac gcagaaaaga ctccggatac ccaaacgtcc      5220
     gaaggatacg tttataagag ggtaggattc cgaacaggcg aaataattaa tgaggaccgt      5280
     gcttggaagc tgtgggttcc agaggaactt cggcaggacc twgttcatca ggcccaccat      5340
     tctcaaatgg caggacatgg cggcatacac aaaactttag ctcgactaag gcagttatat      5400
     tactggcccg caatgacggt tgatgtacaa agaactgtta agaattgtga aatttgcaga      5460
     gtcagcaaaa caacgaacaa atccagccga ccgccgatgg gaaaacaacg aataactgag      5520
     cggccaggac aaagacttta cattgatttc atgggaccat atccccgtac caaatccgga      5580
     aacaccgtga tctttgtgtg tctggaccat ttcaccaaat tcgtctggct agaggcaatg      5640
     cgaaaagcaa ccgcaacagc cgtagtaacc ttccttgaaa gaaacatttt tcatcaattc      5700
     ggagtgccag aatatattca ctccgataac ggtaagcaat ttgtgtcgtc aacatttgcc      5760
     gagttagtca gccaatatgg aatccgacac gttcgaacgg gcttctattc gccacaagca      5820
     aatgcagcag aacgagtaaa ccgatccgtg ctacaaatgc tcaggtcagc tacggacaaa      5880
     gaccagcggc attgggacac acacctgagt cgaatcgcgt gtacactacg aagtggctat      5940
     cacgaagctt tgggactgga accatattat gcaatgtttg ggaccaacat ggtcacacac      6000
     gcaagtgcgt atccgatcat gagacgtatc ggcggcctat cagcaacaga tcaagctcta      6060
     tgcttggcgg ataagatgga actcatacgc agtgtagtta agcaagggtt agcccgggca      6120
     cacgaaaaag ctgaaagaac gtacaataca cgcagtaagg aaattgaatt tgcagtaggt      6180
     caggtggtat accgaaaaaa ctacaagcag agtaaccgaa tggaagggta taatgcaaag      6240
     ctagggccca atcgggtacg gtgtctcata cttggacgca agggagggtc gctgtacgaa      6300
     ttagggaatt tagctggaaa aagtattgga gtataccatg ccaaagacct tttcgctgct      6360
     tgaaactggt tgaaaaccaa cagcaatcag tgcaattgta ctacacagca aaggaggatc      6420
     gttatttttc cggagcagcc agtatttctt actatataaa taactatgga cctcacgaaa      6480
     gacatcgaga acacgaggga ggccgtgaag aggcatctgg aaaggtgcga ggccgaggga      6540
     agacccctcc cctcagaagc tgacgctcgg gaccgcagag acatagcggt ggacgagcgg      6600
     gaaagactcg cctggcttga tacggaccta gaagatacac tacgagcaac gcagtgggaa      6660
     attgagaaga ccacggcaag gataaacgcc gattacaacc gcctcaacga actaattcgg      6720
     ttgagggacg caacacagcg ggacctgcgg atatgggagg aggactaccg ccaggcacgg      6780
     ctcgagactc cgcacttcga agcgacgttc gaatacatat acgcaaagaa cgagcggatc      6840
     cggcgagaaa gccgatttgc aattcgccgg cggcagagga ggcaaagtct gcctccagaa      6900
     taccgtatct acaccgtggc ggaagacgac gatgaggagg aagacgacga cgagccgacc      6960
     ccggcaagac ggcgtttatc agagtaaaga gaaaaaaaaa aaaaaaataa ataaataaat      7020
     atataaatat maaataaatg gaaacaaata aaaatatata tgtatattcc acctgacttc      7080
     ttttttttct attcttttgg ttgaaaatta atgataataa tagcccggat atctcagtcg      7140
     gtagagcatg aaactcctaa atcccagggt atgggtcgag gccacacgtt agggcaataa      7200
     cggactaatt acaatcgctc ctcgtagttt tttttgcgag tgcattccat gctgaatcag      7260
     catcgacgac cctcgagcg                                                   7279
//
ID   Gypsy-65_DEl-LTR repbase;    DNA;    INV; 2022 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_DEl-I;
KW   Gypsy-65_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2022
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7059-7059 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 2022 BP; 704 A; 410 C; 388 G; 520 T; 0 other;
     tgttacggga gcggggtaag aaataaaacc agaaagaaat agataccgta accagagaca        60
     gaagacactg tgaactgcag gtggcgaaac accgaagttg gtcaatacag taaccagcaa       120
     cgaattggtc agagtaagca attcatacga aaatacaact gacaataggt gtatgcagca       180
     attaatatga aacctagcag aacccagaag tgggacagta agcccgaaaa aggggaaatt       240
     ctgtacctaa gtgggaacac ttagatgacc cggaagcaaa accaccggta taaaagagcc       300
     ccacctcagg ttcaaaagca gagtaaaaaa gatcattgcg aatcgagcag tcggagtcca       360
     agataagtgc gaatcagaca agaaacgacc gcggaaccgc gttaggtcca ctactggcaa       420
     aaacagtaat cgcggaggac ctatccgagt gatcgaattt agaacccgat agaaatataa       480
     cttatatatc atgggatcta caacctcgaa agcatccgac aacacggcaa acgtggtgaa       540
     caacgttgaa attgtagacc acaaggagga cataaccaaa gtctacaatg ttttgtgcct       600
     cattactgga ctcttgatct ttatgttgat tctgagcttc ctccggatct acaagcgatc       660
     tgtacagaga cgtcgggacc acggacacga gctggagaaa atcatggctg tcgccgccaa       720
     ttggccagaa aggagccagc actaatatat cagcccgtgc aaagataaaa aaccacatca       780
     ttattattat tatttcaatt ttcgacaaaa caataaacaa tacccattca taataaacca       840
     gcaattaaat acaagcaaaa gaccaaagtt ttgatttgta attggaacca ccagaagaaa       900
     cctcagctag aagtgctacc gtcaaccgtc gcgagtgccg ttttcactct tctcttactc       960
     gcaattcgta gcgccgtaaa gcgaataact tttttttctg tttgtgaaat aagaccaaca      1020
     tcgcgcaatt gcccaagaaa tgacaattaa cataattttt tttatataaa ttaatccaac      1080
     accttattaa taatgctaag agaatttgca ctaatataaa tatatttatg catatgtgta      1140
     taattaattt tccaaaccca gaataccaca atgagagctc tcgtcgatgg aaataaaaag      1200
     gggtaagtga gttgtgtttg acttactgtc aagcaaactt tttatatata tatatttaca      1260
     catatgcgta tatacctaga tctttgtgca atttaaacat ttagatatac atatatatag      1320
     tcttcataca ttagatttaa cgtcctgtaa gattcatatt atcattttta taaattagcc      1380
     caaaatatta ttcttaaata tatatattca tgcttaatgt ttctttttta tacgttaata      1440
     caaatattac atacactata taccgaatat ttctcaattt aattaatttg gcaccccaat      1500
     ttactcttat atttgtcaat taaatgtgca cctttttaaa taaaaatctt tttaataaat      1560
     tgtaatatga agcagaactc aataatgtct tggtaaacgt ttataaaagg gggagctggc      1620
     gcaaatggaa aaactcgggt taagaacaat gacataactt tcgactgaca acattgacac      1680
     taggggatcg cattgcagtg gccggcggcg atccatcggc atacgggacg tatgaagggg      1740
     cagggtaaaa cagccacacg ctgccgatcg aaattcggtc aagcgctcga actagctact      1800
     tgagaagctt gtgggcagcg acgacaaatg acaaaacgaa ctgaacgatc tctatatttt      1860
     tcctaaggca cgataaattt attctcgtta tgtaggggag ggagtggttt ccaaagaacc      1920
     caccccatct ggcgagctta gccggcaacc agcgtgccta ctcaggacgc aactccctcg      1980
     gcccaagtcc tgtggactgg gcactaatac accgacgtaa ca                         2022
//
ID   Gypsy-65_DWil-I repbase;    DNA;    INV; 6573 BP.
XX
AC   .
XX
DT   18-AUG-2020 (Rel. 25.08, Created)
DT   18-AUG-2020 (Rel. 25.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_;
KW   Gypsy-65_DWil-I; Gypsy-65_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6573
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6573
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (18-AUG-2020).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..1891
FT                 /product="Gypsy-65_DWil-I_1p"
FT                 /translation="MFQFSQYRTPRKHFSDSDSDCDIRIEASATRPLPAVS
FT                 PPLGKMDPDQLREIIRSAVSNALAEQAAANEQRERALTQRINELAQQIAAA
FT                 NVAAPQVVAYAAIGIRNDIHCDEPLDAVKCLPEFAGVQEAYVSWRQAALAA
FT                 YEIFRPHNGSSRHYQAVIIIRSKIRGPADAVLASFGTVLNFDAIINRLDFT
FT                 YSDKRPIHVIEQELGTLRQGGLSLLQYYDEVEKKLTLLTNKVNMSYEPTLA
FT                 KGLCEKFRDDALRVFISGLKRSLTDVLFAAKPRDLPSALALAQEVESNHDR
FT                 YTFAANFAKSLEDKERKPHAKAQGHQQERHSRQAETQASGTKNPHFSKQNK
FT                 APVQTDQRSSRQHNNNGAPVPMEVDPSFSRVLQPTQAPVYANRKNPASDRT
FT                 GGQRNQQRLNHVTQDAGQEAEAYADAASSAAAQINDDASYDSDALNFLGVN
FT                 PCYPSSDEE"
FT   CDS           1840..4944
FT                 /product="Gypsy-65_DWil-I_2p"
FT                 /translation="CPQFFRSKSLLPVIRRRIAGTHMRFLIDTGAAKNFIR
FT                 PHEGLKGVHSVESPFKIHSIHGETQITHKCFVAMFGLKATFFILPDLSTFD
FT                 GIVGLDLLKQAAASLCLASGQLKWGTEVEQITFHTCKNVNFTNVDCAEASP
FT                 LARSSFLKMLKTRQKAFADPDEALPYNTSVVATIRTTDEQPIYARLYPYPM
FT                 GAADFVNKEIKDLLKNDIIQKSVSPYNNPIWVVDKKGTDEAGNRKMRLVMD
FT                 FRKLNERTVSDKYPMPNISMILGNLGRAKFFSTLDLKSGYHQIILAERDRE
FT                 KTSFSVNGGKYEFKRLPFGLKNAASIFQRTIDDILREQIGKFCYVYVDDVI
FT                 IFSEDEDSHIKHVDWVLKSLHEANMRVSIEKSRFFKKSVNFLGFIVTSTGA
FT                 TTDPEKVKAIQEYPEPKTLFEVRSFLGLASYYRCFIRDFAAIAKPISNILK
FT                 GENGTVSKHRSRNIKVQFSEVQQRAFQKLRDILSSEDVMLRYPDFKKPFDL
FT                 TTDASAYGIGAVLSQEGRPITMISRLLKDSEVNYATNERELLAIVWSLAKL
FT                 RHYLYGVKDINIFTDHQPLTFAVSESNPNAKIKRWKARIDESNARIFYKPG
FT                 KDNLVADALSRQQLNAVNEQEIESCAATIHSEVSLTNTIETTDKPLNCFQN
FT                 QIVLEEARSPLKRSFILFGNKKRYLISYTSIESLLDELEDVVSPKCVNALH
FT                 CNLHTLAMIQDSLVRRYPATKFWHCKNRVVDVIAVGDRREILTAEHNRAHR
FT                 SAQENIKQVLSEYYFPKMARMANEIVQNCKTCARAKYDRHPKKQELGETPI
FT                 PSHVGEMLHIDIFSTDRKYFLTCIDKFSKFAIVQPIPSRTIVDLKPALMQI
FT                 MNFFPKARSIYCDNEPSLNSETIVTMLANNYGVSISNAPPLHSISNGQVER
FT                 FHSTLLELARCLKIDRGINDTVEVILLATTEYNKSIHSVTDQRPVDVVQAH
FT                 PDEPQGKIQEKIRNAQTMLRARENANRQNRVFDVGDRVLVKSNRRLGNKLT
FT                 PLCDEKAVEADLGTEVLIRGRVVHKDNLR"
FT   CDS           5012..6571
FT                 /product="Gypsy-65_DWil-I_3p"
FT                 /translation="LFNLLLATWHNFYKLSWWWAVKRKTEKLRKNKKTTSF
FT                 HRFGSILFLSLSLASAHVIDYSRAKYIPIVDGEILVWEEYAYARHSANLSE
FT                 YARMVEETVKLIDMFPQSHMKKLLIVDTAHLQDLLEALGTHHRVARSLEFL
FT                 GSILKVVAGTPDAEDLEQTRFTEMQLINANNRQIEINTRVQDQLNQLTITV
FT                 NKILKIAKDSQVDTGHLYETLLSRNRMLMMELQNLMLAITLAKANIVSPNI
FT                 LDHSDLKSIWLEEPTNTPIGDLMSVASVKVLQSINTIHFIIKFPKIKRACR
FT                 KITIYPVIHKNFIVRLFDNVIAECDGETHTLQSCAASPGATFCRLALESSC
FT                 AKELHAGVTAHCEIQPSNLEIITHVDDGIIILNDGSARIQVDNGTEIQVQG
FT                 THLITFGDRVAINGTLFYNHNNVRNRVPGIANSPLLNITATQDVLSLPYLH
FT                 RLNERNLEVIQQFQKNAGTDQAYRVAFIIGAICCALICIGLTLCRLIGAKK
FT                 SAMRLREVVAGIGSAEDGLTLEGG"
XX
SQ   Sequence 6573 BP; 2023 A; 1506 C; 1458 G; 1582 T; 4 other;
     tggcgcccaa ctagtggtcg gactccacaa ccamtaacaa ccaaaacagc agcacaggag        60
     ctgcaacaas caacaacaat aagacagcag cgagggagct gcgagtgacc aacaaaaaat       120
     taagacagca gcgagggagc tgcgagtgac caacctwata aagaaatatt ttttttgtgt       180
     tagttgaatc atgtaagtgg atactctagc caaaattttt cttcaaatac aaaagtctta       240
     attttttgta aaaattagtt agtacttgtg agtattttat attgcaacag atcataatta       300
     ataacaataa tctgaaccag gtttctgaaa cacgtgagag tgactgcctt gagaattcta       360
     gttgaaacaa tttatcatcc aggtcgttaa taaaattact ttgtgttact ttctatgtgt       420
     ctaaaattgt gctatatcaa tacatacagt tctcgtggtt cagagctacg acgtaattcg       480
     atccatcttt tgacggcccg ttttgctttt cgcggccact ggcctgcgca tgtttcagtt       540
     cagccaatat agaacacctc gcaagcactt tagcgactca gattccgact gtgacattcg       600
     catcgaagcc tcggctacaa gacctctccc tgcagtttcc cccccattag gtaaaatgga       660
     tccagatcag cttagggaaa taataaggtc ggctgtcagc aatgctttag ctgaacaggc       720
     cgctgcaaac gagcagaggg agcgagcgtt gacccaaaga attaatgagt tggctcaaca       780
     aatagcagca gcaaacgttg ccgccccaca agtagtagca tatgctgcta taggaattag       840
     aaacgacatt cactgtgacg agccactaga tgccgtcaaa tgtttacctg agtttgcagg       900
     agtacaggaa gcttatgtat cttggaggca ggcagcatta gccgcttacg agatctttag       960
     accacataat ggcagttctc gtcattacca ggctgttatc attataagaa gcaagatcag      1020
     gggccccgca gacgcggtgc tggcctcatt tggtacagta ttgaattttg atgcgataat      1080
     aaatcgccta gatttcacat acagtgacaa gagaccaatt catgtcattg aacaggaatt      1140
     aggtaccttg aggcaaggtg gcctgtccct gctccagtat tacgacgagg tagagaagaa      1200
     actcactctt ctcactaaca aagttaacat gtcatatgag ccgactttag caaagggcct      1260
     atgtgaaaaa ttccgtgacg atgcgttgcg tgtgttcata tcgggtctca agcgcagtct      1320
     tacagatgtg ctctttgcag caaagcccag agacttgcct tcagcgctag ctctcgcgca      1380
     agaagttgag tcaaatcatg ataggtacac attcgcggct aatttcgcaa aaagtctaga      1440
     ggacaaagag cgcaagccgc atgcaaaagc gcagggtcac caacaggaga ggcattcgcg      1500
     acaagccgaa acacaagcta gcggtaccaa gaatccacac tttagcaagc aaaataaggc      1560
     cccagtgcag acggatcaac gaagcagtag gcagcataat aataatggtg caccggtgcc      1620
     catggaggtc gatccttcct tctcaagggt tttgcagccc actcaggccc cggtttacgc      1680
     gaataggaag aaccccgcat ccgaccgcac aggcggtcag agaaatcagc aaagattgaa      1740
     tcacgtcacg caagacgcgg gacaggaagc agaggcgtac gctgatgcgg cctctagcgc      1800
     agcggcacaa atcaatgacg atgctagtta tgactctgat gccctcaatt ttttaggagt      1860
     aaatccctgc tacccgtcat cagacgaaga atagcaggga ctcacatgcg attcctcata      1920
     gacacgggcg cggccaagaa tttcattcgg ccacatgaag ggttaaaagg cgtccactct      1980
     gtagagtccc ccttcaaaat tcattccatt cacggcgaga cacaaattac acacaaatgc      2040
     tttgttgcaa tgtttgggtt aaaggcaacc ttttttattc tgccggactt gtcaactttt      2100
     gatgggattg taggccttga cctgctaaag caggcagctg cttcgctttg tctagcttca      2160
     ggacagctta aatggggcac ggaggtcgaa caaatcacct tccacacgtg caaaaatgta      2220
     aatttcacaa atgtagactg tgcagaggca tccccattag ccagaagttc ctttttgaaa      2280
     atgctaaaga ccagacaaaa ggcctttgca gacccagacg aggcgttgcc gtataacaca      2340
     tcagtcgtgg ccaccattag gaccacagat gagcaaccga tctatgccag gctttaccca      2400
     tatccaatgg gagcagctga tttcgttaat aaagaaatca aagatctgct aaaaaatgat      2460
     ataattcaaa agtcagtctc tccctacaat aacccaatat gggtagtaga caagaagggc      2520
     actgatgaag cgggcaatag gaaaatgagg ttggtaatgg actttcgtaa acttaacgaa      2580
     agaaccgtgt ctgacaaata ccctatgcca aatatatcaa tgatattggg gaatttggga      2640
     agagccaaat tcttttcaac attagacctc aagtctggtt atcaccagat catactcgct      2700
     gaacgcgacc gcgaaaaaac ctctttctct gtaaacgggg ggaaatacga gttcaaaagg      2760
     ctcccctttg gattaaagaa tgcagcaagc atcttccaaa gaaccatcga cgacatactg      2820
     cgagagcaga ttggcaaatt ttgctatgtt tatgtcgatg acgtaatcat cttttcagaa      2880
     gatgaggact cccacattaa acacgtggat tgggtcctaa aaagcttaca cgaagcaaac      2940
     atgagggtct ccatcgaaaa gtcacgattt tttaagaaaa gcgtgaactt tcttggtttc      3000
     atagtcacca gcactggcgc cacgacggat cctgaaaagg ttaaggcaat acaggagtat      3060
     ccagaaccta aaacactgtt cgaggtcaga tcatttctag gcctcgcaag ttattacaga      3120
     tgtttcatta gggacttcgc cgcaatagca aaacccatct ccaatatttt gaagggtgaa      3180
     aatggaacag tcagtaagca taggtccaga aatataaagg ttcaattctc tgaagtgcag      3240
     caaagggcgt ttcagaagtt gcgcgacatt ttgtcatctg aggacgtaat gctcaggtac      3300
     cctgatttta agaagccatt cgatctaacg accgatgctt cggcttacgg cataggtgca      3360
     gtcttgtctc aagagggtcg tcctataaca atgatttcaa gattattgaa ggacagcgag      3420
     gtaaactatg cgacaaatga gagagagtta ttggccatcg tatggtcact tgccaagtta      3480
     aggcattact tgtatggggt aaaagacatt aatatcttca ctgaccatca acccttgacc      3540
     ttcgcagttt cggaatccaa tccaaatgcg aagatcaaaa ggtggaaagc gcgcattgac      3600
     gagtctaatg cacgtatctt ctataaaccc ggcaaggaca atctggttgc ggatgccttg      3660
     tcaagacagc agctcaacgc tgtgaatgaa caagaaattg agtcctgcgc agcaacgatc      3720
     cacagtgagg tatctctcac caacaccatt gagacaacag acaaaccctt gaattgtttt      3780
     caaaaccaaa tagtgctaga agaggcgcgt tcacccttaa aacgaagttt tattctcttt      3840
     ggaaataaga aacgctactt gatcagctat acttccatcg aatcgctgct agacgagctc      3900
     gaagatgtag tttcacccaa atgcgtaaat gctctccact gtaatttaca cacgcttgca      3960
     atgatacaag attcattggt tcgtagatac ccggccacaa agttctggca ttgcaaaaat      4020
     cgcgtagtgg atgtaattgc ggtgggagat agaagggaaa tcctcacagc cgagcataat      4080
     agggcccata ggtctgcaca ggaaaatatt aagcaggtac tctcggagta ctactttcca      4140
     aagatggcaa gaatggccaa tgaaatagta caaaattgca aaacatgtgc tagggctaaa      4200
     tatgatagac accccaaaaa acaagagctt ggagagacac cgatcccctc acatgtagga      4260
     gagatgttac acatagacat tttctccact gacaggaaat actttctaac ttgcatcgac      4320
     aagttctcta agtttgctat tgtccaaccg atcccctcaa gaaccattgt ggatctgaag      4380
     ccagctctaa tgcaaatcat gaattttttt cctaaagcca gatccattta ctgtgacaat      4440
     gaaccgtcat tgaattcaga gaccatagtg actatgctcg caaacaacta tggggtcagc      4500
     atttcaaatg caccaccatt gcatagcatc tcgaatggac aggttgagcg ctttcacagc      4560
     accctgttag agctagccag atgcctaaag atcgatagag gcataaatga cactgtagaa      4620
     gtcattttac tggctacaac tgagtacaat aagtcgatcc attcggtcac cgaccagaga      4680
     ccagtcgatg tggttcaggc gcacccagat gagccacaag gaaaaataca agaaaagatc      4740
     agaaacgctc agacgatgct cagagctagg gagaacgcga atcggcagaa tagggtcttc      4800
     gacgttggtg acagagtttt ggtcaagtcc aaccgacggc tcggaaacaa actcacacct      4860
     ttatgtgatg agaaggcagt ggaagcagac ctggggaccg aggtcctcat tagagggagg      4920
     gtggtccaca aggacaacct aaggtgactc ccttgtcttt tttgtacacc ttttttaagc      4980
     cactaggcaa actcgtataa gttagatata gttgttcaac ttacttttag ccacttggca      5040
     taatttttac aaactttctt ggtggtgggc cgtaaaaaga aaaacagaaa aattgcgaaa      5100
     aaataagaaa acaacctcat ttcacaggtt tggatccata ctattcctct ccttatccct      5160
     ggcttcggca catgtcatcg actactcgcg tgccaagtac attcccatcg tcgacggcga      5220
     aatcttggta tgggaggaat acgcctatgc caggcactcg gcaaacctct ccgagtacgc      5280
     gcgaatggtg gaagaaacgg tcaaattaat tgacatgttc ccgcaatccc acatgaaaaa      5340
     acttttaatt gtggacacgg cacatctaca agacctattg gaggcgttag gcacgcacca      5400
     tagagtcgcc aggagcttag agttcctagg atccatacta aaggttgtgg cgggtacacc      5460
     cgatgccgag gatttagagc agactaggtt tactgaaatg caattaataa acgccaataa      5520
     tagacaaata gaaataaaca ctagagttca ggaccagctt aaccagttaa caatcactgt      5580
     caacaaaatt ctcaagatag ccaaagactc acaggttgac actggccatt tatatgaaac      5640
     actactgtct agaaacagaa tgctaatgat ggagttgcaa aatttaatgc ttgctattac      5700
     tctggcaaag gccaacattg ttagcccaaa cattttggac cactcagatt tgaaatcaat      5760
     ttggctagag gaacccacca acactcccat aggagatctt atgtccgttg cgtccgtaaa      5820
     agttcttcaa tccattaaca ccatacactt tataattaaa ttccccaaga ttaaaagagc      5880
     ttgcagaaag atcacgattt atcctgttat ccacaagaac ttcatagtgc gattgtttga      5940
     caacgtcata gccgaatgcg atggagaaac ccacacactg cagagttgcg ccgcttcacc      6000
     tggagccaca ttttgtcgtc tggctttgga aagttcatgt gccaaagagc tccatgcagg      6060
     tgtcacggca cactgcgaga tccagccgag caacctggaa ataatcaccc atgtagatga      6120
     cggaatcatm atcctcaacg acgggtccgc aaggattcag gtggacaacg gcactgagat      6180
     ccaggtacaa ggcacgcatc tcatcacgtt cggagaccga gtcgcaatta acgggactct      6240
     gttttacaat cacaacaacg tgcgcaatag agtcccgggt attgccaatt ctcccttgct      6300
     gaacatcact gccacccaag atgtcctcag cctcccttac cttcatcgtt tgaatgaacg      6360
     taatctggag gtgatacagc aattccagaa aaacgccgga actgatcagg cctatcgtgt      6420
     ggcattcatc atcggagcca tatgctgtgc tttgatctgc attggcctca ctctttgtcg      6480
     actcatcggt gcaaagaagt ctgcaatgcg gttacgagaa gtcgtcgccg ggattgggtc      6540
     ggccgaggac ggccttacac ttgaaggggg agt                                   6573
//
ID   Gypsy-65_DWil-LTR repbase;    DNA;    INV; 445 BP.
XX
AC   .
XX
DT   02-DEC-2021 (Rel. 25.08, Created)
DT   02-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-65_DWil-I;
KW   Gypsy-65_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-445
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RR (02-DEC-2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 445 BP; 124 A; 98 C; 88 G; 135 T; 0 other;
     agttaacaat taacacttaa cataggatat tttataagtt cataatctac cctcgctatc        60
     gcgtgctcca taagttaagt agcagccctc gcaattgcga cattgcatat cagcgcgcta       120
     tagctgcaat ggtcagcgac ggtaaccgga cacttttgtt ttgctgcaag agtttccgtt       180
     atcgccgaag atttgctgag tcggcttgcc gaccatgaca ttgtggcgtg atgcgaattt       240
     tggcatagct taagtgaaat attctatgta ttaaaaaatc agtttgaata cagcgctctt       300
     ccagtaagtc gcttaaataa atattcactc cggcacttag ccgtaaaata atttgtttta       360
     ttgtctgagc ccaaggccag caataagagg ctcagtttgc ctctcaacct aatcttcacc       420
     cttaacagga ctggagcttt gtaat                                             445
//
ID   Gypsy-65_LMi-LTR repbase;    DNA;    INV; 402 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 20.01, Created)
DT   27-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-65_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-402
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (27-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 402 BP; 111 A; 108 C; 109 G; 74 T; 0 other;
     tgttgtggcg taaagtcagc gccacacgcc agacgcacga gaacgatcgt ggagaaggca        60
     gcggacgacc ggcagccaat cacacgccgg cgccgcgcat cctggaggga gcaaccgaga       120
     agcgcgccct ctacaagcgg ctatatctag gccgacatgc gtctggaagg gcacatctga       180
     actcggctcc gaaataggca gtcactagga ctcagcgcag ctagcatcga gcaagaagac       240
     gccgccgcga gaacagacat actttctaga agttgagtat ttgtgtatac tttagtaaat       300
     aaaacttgta ttactaatct gtatagctgt tttagctgtc cacgcatccc acgcgtcctg       360
     agcagatcct ttcctgaaag acaggccggg gaggacaaaa ca                          402
//
ID   Gypsy-65_SpEx-I repbase;    DNA;    INV; 3007 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-65_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3007
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4131-4131 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..2964
FT                 /product="Gypsy-65_SpEx-I_1p"
FT                 /translation="MPRITRATRAQIGHKAEEQGSDGYSDSDCDSVVEPRA
FT                 HAGAATTQSRDAYDATEETRAQGSAALDHTLGGARTGAPAATEEPRARRGA
FT                 ALDHTLGEAQTGAPAAAFNTERLLSTMMESFARMQAETNRTFVETLRSLRH
FT                 GGDTWSPVTSTPAASPSANTPAACGGNFSKCTARFDGQSRDPEVLEAFIDA
FT                 VEVYKECAGVTDDHALRGLSMLLNGDAALWWRGARAAVGSWPDALARLRAT
FT                 YGVRKPAHMILREVFQCKQSECERAEVFVSKVRCLLIQLPYSVPNEMMVDI
FT                 VYGLLHRRIRKRVSRDTITDIEHLLERARLTEDSITELKNSNVPANNSNIP
FT                 TVPDRSITTSSNATTSPKLTSNSNESSKRNRVRCSFCRSFSHAANECRKAA
FT                 NKVDSTDSSSKVDNTSDSTISNTIRCYGCGQAGVVKSKCETCSGKSTSAPG
FT                 KPADFNVVKGDFFATMMSSHPLVAISVVGKEGVAILDTGATHSVASPMLYS
FT                 LLINNGIEFHETERYVGLADGSCHRKTIKTATVPVTLNSRRVNTEFMVFPG
FT                 DDTRTLLGRDFIAQAEIVLDIAQESWHFADSPGDRYSFLQSFVLNSATVAQ
FT                 VDISDVSHEGTCLSPEQFASAGPPTDFAVHKIKVSGTQKPLASPPFRLSPP
FT                 KRETVKFLGHIILPGGIHVDPGKTAAIANMPTPRNVKHLKCFLQTSSWFRR
FT                 FIPGYAEVAKPLTALLKKVRVWKWGPEQQAAFDKIKHLLVSAPILRQADAT
FT                 LPFVLRTDSSGYSLGAVLLQGEGTDERPIEYASRLLNAAERNYSTTEKEAL
FT                 AVVWAVSKFRGYIDGAEVVVKSDHQPLRWLMSMKSPSGRLARWAQSLQGYN
FT                 LKTEDTPGKANIIADNLSRPACAEDADCDLCCAAVDVPSRSLKDVRENQMK
FT                 DPEVSPTTYNLERLSDGTVLGKYHASVLTPFVGRIQDPVQEKRKRGRPRRF
FT                 C"
XX
SQ   Sequence 3007 BP; 744 A; 814 C; 844 G; 605 T; 0 other;
     agtgacgccc aactcgcggc ccgacgttag tttaatgtcg gcagtaaaac gaacccagtg        60
     aagtgttata tattcagtga ctataaagac ctaatcatgc cacgaattac gcgagcaacc       120
     cgagcacaaa tcggacacaa ggcggaggag caaggaagtg acggttactc cgattcagac       180
     tgcgactcag tggtggagcc gcgcgcccat gccggcgccg ctaccaccca gtcacgcgac       240
     gcatacgacg cgaccgagga gacgcgcgcc caggggagcg ccgccctcga ccacacgctc       300
     ggtggggccc ggaccggcgc gcccgccgca accgaagagc cgcgcgcccg gaggggcgcc       360
     gctctcgacc acacgctcgg cgaggcccag accggcgcgc ctgccgcagc gttcaatacc       420
     gagcgactgc tatccactat gatggaatct ttcgcccgga tgcaggcgga aacaaaccgc       480
     acgttcgtgg aaactctgcg atccctacgg cacggcggcg acacgtggag ccccgtcaca       540
     tcgacgccgg cggcttcgcc ctcggcgaac acacccgcgg cctgtggcgg taatttttca       600
     aagtgcaccg ctaggtttga cggccagtcc cgcgacccgg aggtactgga ggccttcatt       660
     gacgcagtgg aggtatacaa ggagtgcgcc ggcgtgacag acgatcacgc gctacgcggc       720
     ctctccatgt tgctgaacgg cgacgcggcg ctgtggtggc gcggtgcccg ggccgcggtc       780
     ggctcgtggc cggacgcgct agcgcgcctg cgcgctacct acggcgtgcg aaagcccgcg       840
     cacatgatac tgcgtgaggt attccagtgt aaacaaagtg agtgcgaacg tgctgaagtt       900
     tttgtgtcaa aggtacgatg tttacttatt cagttaccct attctgtgcc aaacgagatg       960
     atggtagata tagtgtacgg tttattacac cggcgtataa gaaaacgggt gtcacgagac      1020
     accatcaccg acattgaaca tctgttagag cgagcgagac tcacagaaga ttcaataacc      1080
     gaactaaaaa actcaaacgt tcccgcgaac aattcgaaca tacctactgt tcccgatcgg      1140
     agtattacta cgagttcgaa cgcaaccact agtcccaaac tcacctctaa ttcgaacgaa      1200
     tcgtctaagc gaaatcgtgt tcggtgttca ttctgtagat cgttcagcca cgcggccaat      1260
     gaatgtcgga aagccgcgaa caaagtcgat agcacagatt cctctagtaa agtagacaat      1320
     actagcgata gtactataag taatacaatt cgctgttatg gatgcggcca ggcaggggta      1380
     gttaaatcga agtgcgaaac atgttcgggt aaatccacgt ccgcgccagg taagccagcc      1440
     gattttaatg tcgtaaaagg agacttcttt gcgactatga tgtcatcgca ccctttagta      1500
     gcaataagcg tcgtaggaaa agaaggtgta gcgatactcg ataccggcgc tacgcatagc      1560
     gtcgctagcc cgatgttata ttcgttgctt ataaataacg gcatcgaatt tcacgaaacg      1620
     gaacgatatg tcgggcttgc cgatggctca tgtcacagaa agactattaa aaccgcgacc      1680
     gtaccggtca cgttaaatag tcgaagagtc aataccgagt tcatggtgtt tcccggcgac      1740
     gatacccgga ctcttttagg ccgcgatttt atcgcacagg ctgagatcgt gttagacata      1800
     gcccaagagt cctggcattt tgcggatagt ccaggagacc ggtactcgtt tttgcaatct      1860
     tttgtgttaa atagcgcgac agtggcgcag gtggatatta gcgatgtatc acacgaaggt      1920
     acgtgcttgt caccggagca gtttgcttcg gctggaccac ccaccgactt cgcagtccac      1980
     aaaattaagg tgagtggaac acagaaaccc ttggcctctc ccccgtttag attgtcacct      2040
     cctaagaggg aaacggtgaa gttcttaggg cacatcatct taccgggtgg tattcacgta      2100
     gatccaggca agaccgcggc aatcgcgaac atgcctacac cgcgcaacgt aaagcaccta      2160
     aaatgtttcc tgcagacttc cagctggttc aggcgtttta tccccggcta cgcagaggtc      2220
     gccaaaccat tgacagcgct gctgaaaaag gtaagagtat ggaaatgggg cccggagcag      2280
     caagctgctt tcgataagat caagcacctg ctggtatcgg cgccgatcct gcgtcaggct      2340
     gatgcgacgt tgcctttcgt cctcaggacc gacagcagtg gatactctct cggggcggtt      2400
     ctcctccagg gggaggggac cgacgagcgc ccgatagaat acgccagtcg cctcttgaac      2460
     gctgctgaaa ggaactacag cacgacggag aaggaagctc tagccgtcgt ctgggccgtc      2520
     tccaagttca ggggatacat agacggcgca gaagtggtgg taaagtcaga ccatcagccg      2580
     cttaggtggc tgatgagtat gaaatctcca agcggtcgtc tagccaggtg ggcccagagt      2640
     cttcaagggt ataacctgaa gacagaagac actccaggta aggcgaacat catagccgac      2700
     aatctgtcgc gcccggcatg tgccgaagat gccgactgtg acctgtgctg cgctgcggtc      2760
     gacgtgccct ctcgcagtct gaaggacgtg cgcgagaatc aaatgaagga tccagaggtc      2820
     agtcccacca catacaatct cgagcgcctc agcgatggta cggtgctagg taagtatcat      2880
     gcttctgtgt tgactccctt cgtcggtcgc atccaagacc cggtacagga gaaacgaaag      2940
     agggggaggc ctcgtagatt ttgctaaccc caacgcgagg acgttcgttt gggttagagg      3000
     gggagac                                                                3007
//
ID   Gypsy-65_SpEx-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   20-NOV-2020 (Rel. 25.12, Created)
DT   20-NOV-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-65_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-371
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4194-4194 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 371 BP; 81 A; 114 C; 81 G; 95 T; 0 other;
     tatcgcgcgc ggattgtggc gcgaaacggt agaccgttaa agcagtaggt accgcgtcgg        60
     ccacgtaagg accgcgcacc gcccgcgcat gcgccctgtg cccgcgccgc gttaccgcgc       120
     tcccgccact caagagtcag tcgagtcgcg cgcccgcttc taacgcccgg aacagttatc       180
     ttccgcggat ctcgctcgtt cccgccaaaa ccttgtataa gcagtaccta cctatatttg       240
     ctgtatagtc tattgtgttt ttctaagtgt ctttccaata aacattacct gttatacgta       300
     attcgtgtgc attattgtgt ttcgcctacc taagaactaa cacacaaact ccattttccc       360
     gccaatgtaa a                                                            371
//
ID   Gypsy-65_TrVa-I repbase;    DNA;    INV; 8749 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-65_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-8749
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 310-310 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1185..2408
FT                 /product="Gypsy-65_TrVa-I_1p"
FT                 /translation="MSSRKIITSVSEDMLGAQPQLMSHVTQRLHFPPSQRS
FT                 PFNFNHPVWRTPSPGQGPSATFSAPADLWVSSPPESNTSAAQPSVSDIASL
FT                 ASQLQTFQLDLSNKVDEIMQRIPDLVRGEVDSLRRAGGPCAGDADHYSGLS
FT                 PAVNDYNSVHSPVPPSPGDDHPTARPRKVHYHKEHIKDLTPYNGDDDIMNP
FT                 MEFINSIDNFFCEVHASELTKIAEAGRLLVGKAATWYKAYNGSFSDYQDFK
FT                 VKFLSHFWNLTKQNNIRASLFMPGQYTPNHGDMADYFLNNFKKARYLDDPI
FT                 PEKSLIGAIITHFPMDVQWALTHCNANTVALVIEKLQDLDDLIHRQAQMSR
FT                 HPTHRQPMMTTHSQVANNPTANNYRQTPLHTPKGNAMNVRSVSYDHSTPPP
FT                 ELTDQSANTGHLNC"
FT   CDS           2390..6976
FT                 /product="Gypsy-65_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YRSFKLLESWVANPGNPAQILSVAKIAIDPQNIGILN
FT                 KFSISILQFISSNGAHNNINVLMCAPLMWPQPQFKLSLSQCVVTIRQVSSV
FT                 SATNLESLLAAVFKLHNLNYDYVLVQPSPYWFFAARNTPLSSPMYGKFEIT
FT                 PKFLNNLFAKNFCASVLSFSSSKPVYWLGFNQDASLNLSHDLTNQANQFFA
FT                 AKFESFNNLFALTFGNCSMSDHDHQSSEFCEPHITQLFDQFYQSLVNHQNP
FT                 ALITQVNSLLLDEMDIKEIYRKRFKSPYVLCKIGSQQVSALVDTGSEATII
FT                 RLDLFEQLQKDSGESFPILPVTNMCVRGVTGIKSKKVTSQTLLNFSFNGKV
FT                 FPFSTLILSQISTPLIIGIDFLKTYGAMIDCAAEALELDGQVSVPWHHAET
FT                 QAQEDPSSMLVSTHEYKKVMIFADSHGRGLHQLLGPLLPSSIQVTVNFYPG
FT                 YSFNEVMKRYKDANIGTDTLPIILAGTNNLSPRKSVDQIKGEFDLSPLFAC
FT                 STSPLILCEIFPRYDLKNKAFISTPINLYLRQKLSKNPNILFLKSKGILNR
FT                 DQFNRRGLHLKEEGKSAFADLLASKILNIVAPDYVPPSKTIKNNLEVIDTR
FT                 LAEVDSLSSLVEEELLNLKPPQCDFPTKGPVTRKVINKKLAQAKITSDQKE
FT                 QLASLLYENKDIFSDKPGKCKSFQASLRLTDRKPFVKRSHHIPFAKRKAVK
FT                 AEIDRMLEMNIIERSHGPYSNPIVPVVKKDGSCRLCLDARKLNTKITSDSE
FT                 SPESVESILSRFANPKFISTLDCTASFWQIPLSEESRDCTSFSFNGRNYRF
FT                 CVLPYGLNVSMQNFIKATDIVFQDPSFEHFLSRYIDDLRVVSASFEEHLEH
FT                 LDAVFLALRQANMTLNFSKCQFIEDNVDFLGYIISEKGISKDPEKTRAIAK
FT                 FPKPKNVKQLQSFIGLVNFYSKFHRNHSELLSPLLHLLKKDERWSWGVEEQ
FT                 TAFDKIKEMFIKDIMLAYPDFSRPFLMTTDASLNAVAGELAQIDENGDRRP
FT                 IFYYSRTLSQSEKNYTTTELELLAVVVCCQKFRQFILGHEVTVLTDHSALT
FT                 FLKTCFLSSGRLTRWALFLQEYXLKIEHIKGSDNIAIDTLSRFPPELHSLP
FT                 PNDFEINVHKLAIISEPDGLKEIAKHQRDDPTYGKIIQELEANASDSNQLY
FT                 ELFKGNLFFKHPETSRRLLCVPRALEAEIIKHTHRSLGHFGTSKVFNHLKN
FT                 WVIFPRMRRKITQFITSCLDCQQSKPPCNKTLAPLVPVMANAVLELVSADL
FT                 FGPLPRSRGGFQHLLVLVDVFSKYVRMVPLRNAKAITATRKFISEFVDRFG
FT                 KPQTVIADRGPCFKSNFWDRNLKELGIQPKHSSVYHPQSNPVERYMRTIGN
FT                 FCRLYCHEKHSTWIDYVPFWESCFNNSVSDTTGFTPNEIFRKISPINFLKE
FT                 IIEFPNQSTPSHDVKLKLVLENLSKSAHKRKSRHDNKLKAAPGFVEGDNVL
FT                 VRTHYLSNALYGETKKFFRLYEGPFLINRSVGQNAFELLDPDSGSIKGTYN
FT                 VSNLRKAVKLPPD"
XX
SQ   Sequence 8749 BP; 2385 A; 2059 C; 1619 G; 2681 T; 5 other;
     gctggcgccc aactgcagtg caatccaaaa gcctcgatct ctctcggtgt tcttttgttt        60
     ctgtgttttc ttctttcttc acggaaatca tctcgtgttc ggtaaaacgg cgctcgggcc       120
     acgcgcgtta cgttcgagcc tcgctttatc cacaagtgga ttcctgattg tgtctttttc       180
     tctagtctta tttaacttat tactagttta ttaatcgttc gtttccgtaa acggggtgga       240
     caagtgttgg tgtcggtgtc tcgttgaggc acggcatgcc gtgttcgttt tcaacttttc       300
     atattcgttt cattcagcca tcttgattct tgatttggat ttccttccat tcgccggcag       360
     ttctccttgc tcggtccacg gtccgattcg ttcctctcct ccagtccgtt ccgctcctct       420
     actcggatct agttcgtttc ggtaccgttc ctgtgttgtt gtttatttac gtctgatcac       480
     cgtcaatgtg tagcaactcg gttcgtcctc cgtgcggatt ctatcagtgt ttgtgaaata       540
     aattttctcg ttccattaaa tctcgcttaa aattgttcct tccggtgttc gatatattca       600
     gcggacagtt tgtttctttt tgttttgtga tagtttatca gcgctcttat cctgttattg       660
     tttaaccatc ctctctctca atggaattta tcattattct tcattagaat tttaacgtaa       720
     aaaaaaaaaa aaaaaaaaaa aaaaaattaa ccaagatgcg ctcccgattt acatctcggt       780
     cacattccat ttccgttctt cgatttttaa tgcaactgga aaattaatcg ggacgcagcc       840
     aattcatcgt acctggatcg tcgcaaaatg gacaagttgg gatggcaagt tgaggcgact       900
     ctctttttac gacttcagct tatctctggg actcccatac ctgcacttct ctggacctct       960
     caacggaatc gcaacatgtt ttatggaaaa atgaaagtac taatcggcaa cattcctcat      1020
     tctcgtctgt tccagatttt gcatcctgac aaacctcatc gttggattct cagtcatcgt      1080
     cctggtattc tgtaaaatta gatcttctca ttttattttg ttttctcact gtttagattt      1140
     tttttctccc tcattattag tttattgaat tgtttactga aaccatgagt tctcggaaaa      1200
     tcataacctc cgtttcagag gatatgctcg gggctcagcc tcaattaatg agtcacgtaa      1260
     cccagcggct ccatttccca ccctcgcaga ggtctccttt taattttaac caccctgtgt      1320
     ggcgcacgcc atccccaggg caggggcctt cagccacctt ttctgctccg gcggacctgt      1380
     gggtctcatc tccccctgaa tcgaatacat ctgctgctca accatctgtg agtgacatag      1440
     catcgttggc tagccaactc cagactttcc aactggactt gagtaacaag gttgacgaaa      1500
     taatgcagcg gatccctgat ttggtgagag gtgaggttga cagtctccga cgagcaggcg      1560
     gcccctgtgc tggagatgcc gaccactact cagggctgtc accagccgtt aatgactata      1620
     attcagtcca ttcgccagtg ccaccatctc ctggtgacga ccatcctaca gcacgtcctc      1680
     gcaaagttca ttaccacaaa gagcatatta aggatcttac tccctataat ggtgatgatg      1740
     atatcatgaa tcccatggag ttcatcaact ccattgataa ttttttttgt gaggtgcatg      1800
     catctgagtt gacaaaaatc gcagaagctg gacgtctgct cgtagggaag gcagcgactt      1860
     ggtataaggc ctataacggc tccttttcag actatcagga ttttaaggtt aagttcttat      1920
     cccacttttg gaaccttacc aaacaaaata atattagggc ttctctattt atgccagggc      1980
     agtacacacc caatcatggg gatatggcgg attatttcct taataatttt aagaaagcac      2040
     gatatctcga cgacccaatt ccggagaaat cccttattgg tgcaattatc acgcatttcc      2100
     ctatggatgt gcagtgggct ctcactcact gcaatgcaaa tactgtggcc ttagttattg      2160
     agaagctaca agaccttgac gatctgatcc acagacaagc tcaaatgtct cggcatccca      2220
     cacatagaca acccatgatg acaacgcaca gtcaggtagc gaataatcca accgccaata      2280
     attacagaca gaccccactg cacaccccta agggaaatgc catgaatgta agatctgtgt      2340
     catatgatca ctcaactcca ccacccgaat tgactgatca atcagctaat accggtcatt      2400
     taaactgcta gagagctggg ttgccaaccc tggaaatcca gctcagatct tgtctgttgc      2460
     gaaaattgca attgaccctc aaaatatcgg catcctaaac aaattttcga tctcaatact      2520
     ccagtttatc tcatcaaatg gtgcacacaa taacattaat gtattgatgt gtgctcctct      2580
     tatgtggcct cagcctcaat ttaaattgtc tctctctcaa tgtgtggtaa ccattcgaca      2640
     ggttagttct gtaagcgcaa ccaaccttga atctttgctc gcagcagtct ttaagttgca      2700
     caatttaaat tatgattatg tcctagtgca accgtcacct tattggtttt ttgctgcccg      2760
     taacactcct ctcagctctc caatgtatgg aaaatttgaa atcactccta agtttctcaa      2820
     caatctcttt gcaaaaaact tttgcgcatc agtattgtcc ttctcgtcca gcaagccggt      2880
     ttattggctc ggtttcaatc aagatgcgtc cttaaaccta agccatgatc taactaacca      2940
     agcaaatcag ttctttgcgg ctaaatttga atcttttaat aatctgtttg ctcttacctt      3000
     cggcaactgt tctatgtcag accatgacca ccaaagttca gagttttgtg agccccatat      3060
     cactcaatta tttgaccaat tttatcaatc cttggtaaat caccaaaacc cagctctcat      3120
     tacccaggtc aatagcctct tgcttgacga gatggacata aaggaaattt accgcaagag      3180
     atttaagtcc ccctatgtgt tgtgtaaaat aggctcacag caagtctcag ctcttgttga      3240
     tactggtagc gaagccacca ttatcagact tgatcttttc gaacagcttc agaaggacag      3300
     cggagaaagt ttcccgattc tcccagtcac taatatgtgt gtgaggggtg tcactggcat      3360
     caaatccaag aaggtgactt ctcagacact cctgaatttc tcttttaatg ggaaagtctt      3420
     cccattctca accttgatac tctctcaaat tagtactcca cttattatag gtatagactt      3480
     cctgaagact tatggcgcga tgatagactg tgcagcggag gccttggagt tggatggcca      3540
     ggtctcggtc ccgtggcacc acgcagagac tcaagcccaa gaagacccgt cttcaatgct      3600
     tgtgtcaact cacgagtaca agaaagttat gatctttgcg gatagccatg ggcgaggcct      3660
     acaccaactg ttggggcccc tgctgcccag ctctatccag gtaacagtca acttttatcc      3720
     tggctattcc ttcaatgaag taatgaaacg gtataaagac gccaacatag gcactgatac      3780
     cctccctatc atcttggcgg gcacaaacaa tctttcaccc cgtaagtcag tagatcaaat      3840
     aaaaggagaa tttgacctct cccctctgtt cgcctgttct acttctccac taattttatg      3900
     tgaaatcttc ccaagatatg atctcaaaaa taaagccttt atttccaccc ctataaacct      3960
     ttatttacga cagaagctgt caaaaaaccc caatattctg tttttgaagt cgaaaggtat      4020
     tttaaataga gatcaattca atcgcagagg actacaccta aaggaagagg ggaaatcagc      4080
     cttcgcagac ctccttgcga gtaaaatcct caacattgta gctccggact acgtgccacc      4140
     gagtaaaacg ataaagaata acctggaagt aatcgacaca aggcttgcgg aggttgattc      4200
     cctctcctca ttggtagaag aggaactcct taatttaaaa ccccctcaat gtgacttccc      4260
     cacaaaaggg ccagtaacac gtaaggtcat caataaaaaa ttggcccagg ccaaaattac      4320
     aagtgaccaa aaggagcagt tagcctctct actctatgaa aacaaagata ttttctcaga      4380
     taaacctggg aaatgtaaat cgtttcaagc ctcattgcgt ctgacagatc gtaaaccttt      4440
     tgtcaaacgc tcacatcaca ttccttttgc caaaagaaag gctgtcaagg cagagattga      4500
     cagaatgctt gaaatgaaca taattgaaag atctcatggt ccatactcga atccaattgt      4560
     tcctgtagta aaaaaggatg gttcttgcag gctctgcctt gacgctagga agttaaatac      4620
     taaaataaca tctgattctg aatcgcccga aagtgttgaa tccatcttga gccggtttgc      4680
     aaacccaaaa tttatatcaa cacttgactg caccgccagt ttctggcaaa ttccgctctc      4740
     cgaagaaagc agagactgta ccagcttttc tttcaatggt cgcaattatc gtttctgtgt      4800
     tcttccttat ggcctcaacg tttctatgca aaatttcatt aaagcaaccg atatagtttt      4860
     tcaggatccc agttttgaac attttctcag cagatacatt gacgacctga gggtggtctc      4920
     tgcttccttc gaggagcatt tagagcacct ggatgcggtt ttcctcgctc tgagacaagc      4980
     aaatatgacg ctcaattttt cgaaatgtca attcattgaa gacaacgttg atttcctagg      5040
     ttatattatt tcagaaaaag gtatcagcaa ggatcctgag aagacccgtg ctattgctaa      5100
     atttccaaaa ccaaaaaatg taaaacagct ccaatctttt ataggcctag tcaatttcta      5160
     ctcaaagttt cacagaaatc attctgaact tctgtctcct ttactccact tgctcaagaa      5220
     agatgaacgt tggtcttggg gtgtggagga gcaaacagca ttcgataaga tcaaagagat      5280
     gttcatcaaa gacatcatgc tggcatatcc tgatttcagc cgcccttttc taatgaccac      5340
     cgacgcctcc ttaaatgcag ttgccggaga gcttgctcaa attgatgaga acggagatag      5400
     gcgccccatc ttctattaca gtcgaacctt gtctcagagc gagaaaaact atacaaccac      5460
     ggagctcgaa ctgttagcag tcgtagtctg ttgtcaaaaa ttcagacagt tcattctcgg      5520
     tcatgaggta acagttctca ctgaccattc tgccttaacc tttttaaaaa cttgtttctt      5580
     gtcatctggt aggctcaccc gatgggcttt atttctgcag gaatataakc ttaaaatcga      5640
     gcacatcaaa ggttctgaca atatagctat agatactctc tctcgcttcc cgccagagtt      5700
     gcattctctc ccaccgaatg attttgaaat taatgtacat aaattagcaa tcatttctga      5760
     gcctgacggt ctgaaagaga tcgccaaaca tcaacgtgat gatccgacct atggtaaaat      5820
     aattcaagaa ctggaagcca atgcatctga cagcaaccag ttatatgaac ttttcaaagg      5880
     aaatcttttt tttaaacacc ctgaaacctc tagaagactt ttgtgtgttc cgagggccct      5940
     cgaggctgaa ataatcaaac atacccatcg gtctttgggc cactttggca catcgaaggt      6000
     ttttaaccat ttgaaaaatt gggtaatttt tccacgcatg cgtcgaaaaa tcacccagtt      6060
     tataacctca tgtttagatt gccaacaaag caagccgcct tgcaacaaaa ctttggcccc      6120
     attagtgcct gtcatggcta acgcagtttt ggaactggtt tctgctgacc tttttggccc      6180
     cctccctaga tctcgtggcg gcttccagca ccttctkgtg ttggtagatg tgttctcaaa      6240
     gtatgttcgc atggttcccc ttcgtaatgc taaagcaata acagcaaccc gaaaattcat      6300
     ctctgaattt gttgatcgat ttggtaaacc tcaaactgtc atagctgatc ggggaccatg      6360
     tttcaaatct aacttttggg accggaattt aaaggaacta ggcatccaac ccaaacactc      6420
     atcggtgtat caccctcagt cgaacccagt tgaacgctat atgcgaacaa ttgggaactt      6480
     ctgcaggtta tactgccacg agaaacatag cacttggatc gactacgtac ccttctggga      6540
     aagttgtttc aacaatagtg tcagcgatac aacaggtttc actcctaacg agatttttag      6600
     aaaaatttct cctattaact ttcttaaaga aatcatagag ttcccaaatc aaagcacccc      6660
     gagtcatgat gttaaattaa aactagtact wgaaaatctc tcaaaaagtg ctcacaaacg      6720
     taaatcgcgc catgacaaca agctgaaagc cgcccctgga tttgttgagg gggacaatgt      6780
     gttggttaga acccattacc tatcaaacgc tctttatggc gagactaaaa agtttttccg      6840
     cctctatgaa ggacctttcc taatcaatcg ttcggtgggg cagaatgcct ttgagcttct      6900
     cgaccctgac tcaggcagca ttaagggcac atacaatgtt tccaatttga gaaaggccgt      6960
     aaagttgccg cctgattaat atatataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      7020
     agggagtctt tgaaattttt tttttccctt ttttttccag ggaagggggt tagcaaatag      7080
     ccattcactg aaaccccctc ccccttgttt tttacttttt cattttagct tttaagtaaa      7140
     gtcaaacagt ccaatttggc ctattaattt gacttcatat tagatttaag tacatctgtg      7200
     ttcacttatt ttttcaattt cgcttctacg cctagagaat cgagtgctca aatatggaat      7260
     accccctctc tttgtttcac cagccgacaa aacctccccc ccttcttttt ttttattttt      7320
     ttatcacaat acgttgcgag gcaccttctg tgcccgcaaa caaaataaaa aatcctctct      7380
     atagttcggt tgctacatca tttgaatcta aaaaacaaaa ctgttattta taccagacta      7440
     ttgtcttcca ccttacaggc tcagtctaac ttatgttatc ttgattcctc gatattgtat      7500
     taaccagggc tcgccatcat caacctcgtt tgatttgctc aggaatcctc agtgtctctc      7560
     aggttagaga atctgattcg cattgagaag aggcttcctt agcagagctt tgtgaaccgt      7620
     ggtacggatc atwgattaga gaatccttcc gttctgccga gaagcgctgt taggggggac      7680
     tcttgagaaa accccaacta attttttttt attctctatt cctcctcatc ttaatgtatt      7740
     ctattgttat tccttgtatt gtaatttttt tttattctac agactctccg tatctctcct      7800
     ccaaagaagc tctagagaga gccgcggagg cgagtgcgaa ccttaggacc ctgccagtcc      7860
     aaggctcatg agtcagtccc gctagtaagc ataacccaat gcacggcaaa acctaaggtg      7920
     gactgagttt gcaccaatat ttgtttcatt ttaggacttt taactttgtc ttttaacttt      7980
     gtaccagttt ttcactgatt tctgtaatta aaacagggac ctaccaccgt tggcaaagcc      8040
     aaactctcag atatcagctc tacctttctt ttgtctttat gtctattgtt tcaaatgtgt      8100
     ttttttttat tattattttc ttgggatttt cattctcttc actcagagaa gctctagaga      8160
     gagccgcgag aaggagtatg aacctgacct tgccaatcag gtgcaaaatc cctcatgtcc      8220
     cttmagattt tccctgctgg cagcctttat gaaaaaactg gttcaccttt ataataataa      8280
     aactttccgt agcaaccaaa tgtctcattt aagtctggtg aaaagagctc gccgtccact      8340
     cccatgtttt attctttttc ttcttttctt gtattttatc aaactgacct gctttgatct      8400
     cgggtcattc cacgtcagat catatcaagg aagaattttg ttcttttttg gtatgatttg      8460
     aaatggaatg accctctcat gtgtctagtt ttaattgaaa cagtcatttg ccttaagcct      8520
     gttacctttg taaccttttt tttttttcta tttgtctctg tttgattcat gtaaatatgt      8580
     tatctgttat cttcggaaaa agaaaatgat attattcaat aaagccccaa gcgaaaaaat      8640
     tatagcttgg agggccactg ccggcacctc ttattccttt ttttttagcc agggtttcgg      8700
     tcccctggag ccccaacttt ttgggacttc agaggaccga gggggttgt                  8749
//
ID   Gypsy-65_TrVa-LTR repbase;    DNA;    INV; 465 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-65_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-465
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 369-369 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 465 BP; 101 A; 120 C; 104 G; 140 T; 0 other;
     tgtaacgtac ccagagtctc cctgcctcta atttgaatct cgcgcgctcc gcctgtctca        60
     cgcagtgccc accagtcaca aaccagcaag cctgttggct gctggtgact ggtggacggt       120
     gtgtgaagca cgcggagcgc cccctcctta ttattctttg ttctaactcg caactgtata       180
     gacgcgtatt cgtgtagaag ccgggcttcg ttattttatt aacataatgt gagtttcttt       240
     tagcatcatc ccttcgggga tgatttagtt ttctgttcct ataacttcat gtaataagag       300
     tggtcggcgg tggccttcgg gccctacttc cttcaaagtt aaaccgtctt tctttctttt       360
     acgaaaacct ccggggcagg catcgagcct gtcccatggg caagctcgat gcctgcccag       420
     ttaaataaaa gttaaagtta tatgctgcaa agctgtaact ttaca                       465
//
ID   Gypsy-660_AA-I repbase;    DNA;    INV; 5899 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-660_;
KW   Gypsy-660_AA-I; Gypsy-660_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5899
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5899
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2048-2048 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 5899 BP; 2215 A; 1142 C; 997 G; 1545 T; 0 other;
     tggcgaaccg taactagtcg aatctgttaa gtgttgtgtt caagatggag aaaaatacga        60
     aattaggact ttgtttagtg cttatctgtg tcgcaagtgg gttcatgtta attgaatttt       120
     tatctgctta cctcaaagat atgaaagcga taaatgatat ggctaaaaac gccatccact       180
     agaaaagtga ttcccccaga caatggaatt tggaccattg aaactcgaac gcaaagcaaa       240
     ttagtgaatg aacaaagtcc caaaatgggc aaaactaatt cgaaatcgga cgttgtacat       300
     aacgcggatc ctcagatccg aatcgtgaat aatcaagaaa ttcatagtga gttccacgaa       360
     gaacatgcaa tcaagctgaa cattattctg gtggttgtat cggctcagct tattttagtt       420
     gtgtacaaaa tgtggcgcag aagagtgcag caaaaagcta ttagaaaaat taaatccatc       480
     gcggaactag acaaagtcta gtacaaaatc gaacaaataa agacaatttg caagtgcgcg       540
     gaacgacccg atggtatctt aatgattcct gataaggtga ggagaataat aacctgaacc       600
     aaaacgagcg ttgaggagcg cgcctccctc gttcgtcatc aacgcgaaga acaactcatc       660
     aatgggcgtt gaggagtgcg cctccgcccc atcaaacgag tgttgaggag tgcgcctcca       720
     ccgttaggca gaattagctg taatctatgt aagtaaattt tgcctgtaaa caattgtaac       780
     caacaaaaca aaacaaaaaa aaaattttgt ccatcaatgg aagaattgtt tatcaagtta       840
     aaaaacgttt tattaaattt taaaaaagca ccaaatcgtc gatactcagc gacgcattta       900
     acaagagtat cgaagttaag taaaatatta tacaacaaaa ttttagctaa tctagtgaat       960
     tattcagtaa gtgaacagac aatttacaaa gaatcagctt ccaagatttt cacagaaatc      1020
     agtgaaattt tagacactaa attgggtgta ccatcgaaaa cattaccatc cttcaaaata      1080
     ttgtgtaaag ttatatgcat atttcttaaa tcttataata gaatcaaaat gacttctata      1140
     gctgaaacaa ttaaaatcgt ggcagcactt gttccgcaat acagcggatc ggtggataaa      1200
     ctaccagctg ttatatctgc gcttactgct ctgaaatcgc ttattacgaa cgataacagg      1260
     gcagcggcga ttcaagtcgt gctatcacgt ttcgatggca aagcgcgcgc cgcggtaggt      1320
     gacaatcctg ctacaataga tgcaataata gacatactga aagataagtg taacaaaaga      1380
     ccacatccgg aaacggtagt ggcaaagctg aatgcagcaa aacaaaccgg tgacataagt      1440
     cagtttgcgc aacaaataga aacgctcact acggagttag aaaagtgcta cctggcagaa      1500
     aatgtcccgg ttaacactgc tactaaccta gccacaagag ccggtgtaaa agctctcact      1560
     gctggtattc gcagcagtga aactaaaatg attttaaaag caggacaatt taacacgtta      1620
     tctgctgcag ttgaaaaggc tatcgaaaac gaaccaacca aagagccaca gagcatttcg      1680
     caaatgatgt atgcgaaaag aggtagtttt cagtcacgtg gtagagcaaa taccagacaa      1740
     aatcataatc gtggatttaa tagaaataat aatgcccaaa acaattacaa ccagagccga      1800
     aacaatttca ataggttcca aaataatttt taccgtggac agcaaaacac gtttcactct      1860
     cgaggaaacc cgagaggaag aggaagacac atcggtcatt cgacttacta tgcacataca      1920
     cagtaccctc cagaaaatgc tcaagaaagg caacaactaa ttcctacgta tcaaattcag      1980
     cctacacagc attttgcggt ccaacaacct cacaacgtac aaaataatag tgatatccac      2040
     cctttagggg taccactcgg gcggcatata caataaatgt gaccgccacc aactacgtac      2100
     agctaatgct cgatatgaca gattcccaat cttcattcat tgttgattgt ggctcggaca      2160
     tatcgattat aaaagctaac aaaattagga aaacacaaat tttttatccc tctgacaaat      2220
     gcgatataat cggaataggt caaggtaata caagcacaat aggaacaacg catgcaaatt      2280
     tactaatcaa tggcatgtta ataccacaca aattccacat agtagagaaa atttttccta      2340
     tccccaccga tggtatttta gggagagatt ttctcgtaac ttacaattgt aaaatagact      2400
     atgagtcttg gttactgcat atacctatga actcagaaac gttagaattg ccaattgtga      2460
     ataattttca acgccaaact atcatccccg ccagatgtga aatcatccga agactcaata      2520
     atacaaattt agcagaagac agcgtgattt tttcccaaga aatttcagat ggtgtatttt      2580
     gtgcaaattc aattgtaagc aagaacagtt gtttcattaa gtttataaac acgactaaca      2640
     atgatttcat attaccatta ggatttacac caaaacatgc ccctttagcg aaataccact      2700
     attatgcctc aaatgatgta ccatgcgacg aaatgagaaa acagaaacta aaaaatgaaa      2760
     ttataacaca acatttagaa cctaatatta aacaaaaagt tgaaaccctg tgtcaagagt      2820
     tcaacgacat attttcactt gaaaacgata ttttgactca taataatttc tatgaacaaa      2880
     atatacagct taacaatgaa aaaccggttt acatcaaaaa ttatcgaaca ccggaaagcc      2940
     aaaaatctga aattaatgca caggtcgaaa aaatgctaaa tgaaaaaatt attaaaaact      3000
     caacttcacc attcaactca ccgatactat tggttcctaa aaagtcctca ccagacgaga      3060
     aaaaatggcg tttggtgatt gatttccggc agttaaacaa actaatagta ccagataaat      3120
     ttccacttcc ccgtattgat gatattctag atcatttagg tcgagcaaag tattttacta      3180
     cacttgatct catgtccgga tttcatcaaa tacctttaga tgaaaactcc aaaagttata      3240
     cagccttctc caccgacaag ggacattttg aatttaatag actccctttc ggactaaaca      3300
     tcagcccaaa ttcatttcaa cgtatgatgt ccatcgcttt gagcggacta ccaccgcaat      3360
     gtgcatttct ctatattgat gacatcattg tggtaggttg ttccgtgaat caccacatta      3420
     caaatttata taaagtattt caacaattaa gaaaatttaa tcttaaatta aacccgaaga      3480
     aatgtcattt cttcaaaaat gaagtgacat atctcggaca caacatttca gaaaaaggca      3540
     tacagcctga taaaacaaaa tattccgtca tctcaaacta tcctgtaccc aaaaacgctg      3600
     atgacgtacg gcgatttgtt gcgttttgca actactatcg tcggttcatc agaaactttg      3660
     cagaaataac taacccactg aacaaattat tacgaaaaaa cacgccattc aagtggagcg      3720
     aagaatgtga gaattcattc gtcacattga aaagcaagtt aatctcacca caaattttac      3780
     aattccctga ttacgaaaag gatttcatca taattacaga cgcctcaaaa cttgcttgtg      3840
     gtgcagtact tgctcaagtt catgatggat tcgaattgcc agtcgcattt gcaagcaaag      3900
     catttacgaa aggcgaatca aataaatcaa cgatagagca ggaactgact gcaatacatt      3960
     gggcggtcaa tcatttcaga ccatacatat atggtaggaa atttactata cgtacagacc      4020
     atcgaccctt gatatatttg ttttcgctta aaaatccttc ttctaaacta actcgaatga      4080
     gatgggattt agaagaatat aattttgaag tagaatacat caaaggaaag tccaatgtgt      4140
     tatcagatgc gttatcgaga atacaaatta cctctgattc tctgaaacaa atgtttatag      4200
     tcacaagatc aatgacaaaa cgaaaagata ccaaaaattc tgacctttct tcacagaagc      4260
     ctgatcaact tcacgtgtac gaagctctga acaatttgga atcattcgat ttgccaaaac      4320
     taactttctc atacaatata aataaaacgt gtgtatatat gaccatttat gataagaaat      4380
     ttcggaagag gttatctcca gggatagcac tcgcattgga aaaacccgga aaaactaagt      4440
     taaaccttga aaacatacta caaattatcg atggcaggcc tgccgataac acaaatatta      4500
     tgggaacaat cccgaaaaag ctagcaatac agaaaaacga cattattttt aaacatatca      4560
     atataaacag tttcaaaaca ataggtaatg ctgttcttag gaacgctacc atattaattt      4620
     atgaaaagcc tgttgaaata tcaacagtag cagaaatgaa cggtatattg aaacaatacc      4680
     ataactcccc aacaggaggt catccaggaa taaacagact atataaaaaa ctcaaatcgt      4740
     tgtattcttg gccaaacatg aaacagacgc ttacagatta cgtcaactca tgtgaacttt      4800
     gtaaaattaa taaacacgcg ataccagtaa aaacgcgtgc tgtagtaacg actacaccta      4860
     acaaaacttt tgaagttgtg tccattgaca ccatcggacc gtttgcactc actgaaaaag      4920
     gaaaccgcta tgcagtaaca ttgcaatgcg atctttccaa gtacgtgatt gcgattcctg      4980
     tcccagacaa atcagctgct tcaatagcta aagcagttgt agaaaaatgc attcttatat      5040
     atggaccaat gagttgcata aaaacggacc aaggaaccga atacaaaggc gtattcgatg      5100
     aagtatgcaa attactgcag ttaaaccata cttgttcgac cgcttaccac ccccaaacga      5160
     ttggtgctgt agagcgcaac cataaatgct taaacgagta tttaaggatc ttcgctaatg      5220
     atcgtacaca tgattgggat gagtggttag cattttattg cttcgcatat aacacaaccc      5280
     caaacacaga ccatgactac accccgtttg aaattatttt tggtaaaaaa ctaaacactt      5340
     ttaaaatcag tgaaaatcta caagttgatc cacactacaa tctagattct tacgtaaacg      5400
     aattaaaatt cagacttcaa gttacacatg ccaatgttat acaaacaata attaacaaaa      5460
     aagaacaacg aacaaataaa ataaatgaca gaattaaatc tacagatttg aagataaatg      5520
     atacagtata tttacagatt caaaatagac ataagctaca accagtttat gctggtcctt      5580
     ataaaataat ccaactacga gaatcaaatg caataattaa agacagtaat aataaaacaa      5640
     tggaagtaca taaatcaaga cttgtattga aataaataac tataatatat aataaataca      5700
     gaagagagat gctcccacct tttccttaag gggaaggaga gtattaggag agataacata      5760
     atatacattt tggaaaataa ttggattata aaacatattt acgagataat aaaattcaaa      5820
     aataataata acaattgtga gagacatttg aagctgaacc tttctatata attatccttt      5880
     ctcgcccgta ggggaatgg                                                   5899
//
ID   Gypsy-660_AA-LTR repbase;    DNA;    INV; 426 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-660_;
KW   Gypsy-660_AA-I; Gypsy-660_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-426
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-426
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2078-2078 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 426 BP; 123 A; 99 C; 82 G; 122 T; 0 other;
     tgtgacatgt gcattcaaca tgtcattcct attcctacat tttagcatat ccagcagacc        60
     acaccagtgg aaacatgcga tcgtaaatta ccgtcatagg cattgaacca tcagttcaat       120
     gcctgctcaa aatagtcagc acttatggca actgccagaa gtgtcgggta acaatttatt       180
     gaaccatgct gttgccatcc gcaggcatgg ccctttttgg aatactctat ctttctcttt       240
     tccgcatgca tcgatcactg ataggtgatc gcctacatgc tgtttcacat agatcgaagc       300
     ttcgagtgtc tccagtagga ccttgtaaca aatcaatttg aaataaagaa tcattcttga       360
     ctggaaagcg cgagagttca tacctctagt gatgacaatc gtccaagtag tgaaatgaac       420
     gttaca                                                                  426
//
ID   Gypsy-661_AA-I repbase;    DNA;    INV; 4605 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-661_;
KW   Gypsy-661_AA-I; Gypsy-661_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4605
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4605
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2049-2049 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4605 BP; 1246 A; 1232 C; 1090 G; 1037 T; 0 other;
     gtggcgactc gggaaaggca atttccgtcg tagaaaacga tcgaaagtgc caccaacgcg        60
     gaaaagacga cggctcagta tggatgaaga acataaccac aattcgggga atgatgcagc       120
     aggagtcagc ggacaacgtg gtcagcaacc acctgcagga gcattccaac ttcccggagg       180
     acagcaaaat caccatccgc agccaaacgt cgtccatcat cctcctccac catcagctcc       240
     aaatcagcag ccgacatcca ccgaagcgat ttttgcccac ctcttccagc aacagcaggt       300
     gttcgcacac caactcatga agcaacaaca agaattcatg cagcagcagc aaactctctt       360
     tcaccaagca ttgtcatcga ttcgagttca ggtacctccc aatcctgaga ttattcttga       420
     ttcgctggcg aacaatataa aagagttccg gtacgagccg gaggggaacg tcacgttcgc       480
     ggcttggtac gccaggtatg atgacctctt tgagaaagac gctgctcgtc tcgacggtga       540
     ggcgaaggtc cggttgctca tgcgcaaatt aggagctgtg gaacatgagc gctacgtaag       600
     ttttatctta cccaaggttc cgaaagattt ttcattcgac gagaccgttc agaaactgaa       660
     aacgcttttc ggtgctgtag agtccgtcgt gagcaaacga tatcggtgtt tgcaaaccgc       720
     aaaacaaccg acggaagatt ttatctcatt cgcctgtcga atcaacaaga actgtgttga       780
     gttcgaactg agcaaaatgt cagaagagca atttaaatgc ttaatgttcg tttgcggtct       840
     taagtcggaa ggagacggag aagtgcgaac gagattgctg tcgaaaatag aagagcgagt       900
     ggacgtcacg ctcgaacagc tgtcggaaga ttgccagcga ttgctgtgtc tgaagcacga       960
     tacggcaatg atcgaagcac cattatctgc agcagttcag ttcgtgaaga agaagaagca      1020
     gttcaacaag tatccaccga agccaggcga ccgatccacc ggagcagaag cgaaacggcc      1080
     gaaaaacgga ccagcaaccc cttgctggtg ctgtggagca atgcacttca accgggactg      1140
     ttcgtacaag cagcacaaat gcaacgaatg tggcctcacc ggccatcgcg aagggtattg      1200
     ctcgagtgct aagaagagtc caaaatcatc aggattcaaa cggaaatacc aacatggagc      1260
     cttctcagcc aaaacagtaa gtctcttggt aaataccgtt aacgaaaaac gtcgtttcgt      1320
     tcaagcccaa atcaatggag tggatgtgcg ccttcagttg gacactgggt ccgacatcag      1380
     catcgtggca aagcgaacgt gggagaaaat tggcaagccg ccaaaactac cagctacgga      1440
     acgagccgca acagcctctg gtgatccact ggagctgctt ttcaagtttg aaagtgccat      1500
     tactatcaac ggagagcagc ggcaagccga gttctacgtg gtagacaaat ctctccatct      1560
     ggccggaatc gacattctgg atgcgttcgg gttgtggtcg gtacccatca acacctactg      1620
     caacaatatc accagtccct catcctgcat agattccctc aaggctgcat ttccagcagt      1680
     attcagagac gaattagggc tgtgcaacaa aacgaaggta aagctggagc tcaagccagg      1740
     agcggttccg gtgtttcgcc caaaacgtcc tgtggcatac gccatgtaca atgcggtgga      1800
     tgacgagctt gacaggcttg aacgagccaa catcatttca ccggttcatt tttcgaattg      1860
     ggcggccccg atcgtagttg tgcgcaaggc caacggcacc atccgtatat gcggagatta      1920
     ttcgaccggc ctcaacgatg ccttacagcc gcaccaatat cccctgcctt taccagaaga      1980
     cattttcgcc aagttggcca attgcaccgt gttcagtcaa atcgacctgt ctgaagcctt      2040
     ccttcaggtt gaggttgatg aaggcagtcg ggatctactc acgattaaca ctcaccgggg      2100
     attgtaccgc tataaccgct taccgccagg agtgaaaaca gcaccgggcg cattccaaca      2160
     attaatcgat accatgcttg ccggtcttcc atgcacttct ggttaccttg atgatgtggt      2220
     tgtaggcgga aaagatgcgg cagagcatgc acggaatctg caagctgttt tggcccgaat      2280
     tcaagagtat ggctttacgg tccgtccgga aaagtgtact ttcacgcaac tgcaaatcaa      2340
     gtacctcagc ttcatgctcg accgccaggg acttcgacct gatccagcaa agattcaagc      2400
     tatcaccgaa atggctcctc caaccgacgt ctccggtgtt cgctcgttcc ttggggctgt      2460
     aaattattac gggaagtttg tcccaggaat gagatcgctt cgttatccgt tggacgaact      2520
     tctgaaggct ggtgcaaagt ttcgttggac accagagtgc cagcaggcat tcacgaggtt      2580
     caaggagatt ttatcatccg atttgctcct tactcattac aacccgagcc ttcccatcgt      2640
     tgtatcagca gatgcgtcgt ctgttggtgt tggtgccaca attagccata aatttccgga      2700
     tggctccata aaggttgtac aacatgcatc acgagcacta acaccagcag agcgaaacta      2760
     tagtcaaccc gaccgcgaag gcctcgcgat catatttgcg gtaacgaagt tccaccgaat      2820
     gctcttcggt cgccgattcc atctgcaaac tgaccatgcc ccacttttgc ggatattcgg      2880
     ctctaagaag ggaatcccag tatatacgtc aaatcgcctg caacgttggg ctttgaccct      2940
     attgctgtac gacttcacca tggagcatgt cccaacagcg aaattcggca atgctgacgt      3000
     gctttcacga ctcatcagtc agcacgttcg accggatgag gattacgtta tcgcctcggt      3060
     cactcttgag gacgatatca ggtcagttgc ttccgatact attaattccc ttccgttgag      3120
     tttcaggctc gtacagaaag ccattcagtc cgatccaatc acaaagaagg tatatcgcta      3180
     catgcacgaa ggctggccaa cgatgaagca agccgccgaa ccggaattga agcaattttg      3240
     caaccgtcag gactcactta ccacggttca aggttgcata cttttcggcg atcgtctggt      3300
     catcccttca acgtaccgcc ggcgctgcct agaccaactt catcatggac accctggtat      3360
     tcaacgtatg aaagcgattg ctcgatcgta cgtgtactgg ccatctttgg acaaggacat      3420
     cgtcgactac gtcaaatctt gccgacattg tgccagcgca gcgaagaccc caccaaaatc      3480
     agtaccggta ccgtggcccc gttcgaccaa accatgggat cgggtccaca tagattatgc      3540
     tggaccgatt atcggagaat actatctcat cattgtggac tcgtactcaa aatggccaga      3600
     aatcatttcg acacgcagta cgaccacagc agccacggtg tcaattctca aggacgtctt      3660
     cgcacgattt ggtatgcctg caacgttggt gagcgataat ggaccgcagt ttgctagtgc      3720
     aacatttcaa gcattttgcg cggaaaacgg catagatcat ctcaccactg cgccctttca      3780
     tccacaatct aacggccaag ccgaaagatt tgtggacacg tttaagagat ccatcaaaaa      3840
     aatccaggag ggaagaggaa cagtacgtga agcactcaat attttcctaa ttacgtacag      3900
     aagcacacca aatccatctg ctcccgatgg taagtcgcct gcagaaaaca tgttcggtcg      3960
     tccaatccgg acgtgtatgg agctacttcg tccgcctacc aaccattcat cgacgtacaa      4020
     cgaggcccac aaagtgaagc gaagctacca tcgagctgat aaagtctttg cgaagctcta      4080
     catcaacaac aactggcatt gggcaccagg agttgtactg gaaaaagttg gcaacgtaat      4140
     gtacaatgtt tgggttgaca accgaaggct cgttcggtcc cacgtcaatc aattgaagga      4200
     tcgaaatgaa tctgatcatc atgtgaaggc tcaacttgga aacagtgtta aactgcccat      4260
     caacatcttg ctcgatgcgt ggaatctacc cgttccacga tcaccaacca ttccaccaaa      4320
     tccaacgcct tcagtgggac aaattcaccc ttcgtcgact cccaacgcaa gtgttcatct      4380
     gccggtacag tcaccggaac tcctatcgtc tttatcagca atatcatccg cttcctcgtc      4440
     gagctctgtg caagtctcgg cgtccagggc agactccgct acaccggact tccaatctgc      4500
     cattgaacct caacaagaat cagctgcccc ggcacctcgc cgctcttcgc gtgcccgaag      4560
     agcgcctcag agattccagc cgtacctccg atattagagg ggaga                      4605
//
ID   Gypsy-661_AA-LTR repbase;    DNA;    INV; 261 BP.
XX
AC   .
XX
DT   22-DEC-2018 (Rel. 26.04, Created)
DT   22-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-661_;
KW   Gypsy-661_AA-I; Gypsy-661_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-261
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-261
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2079-2079 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 261 BP; 72 A; 67 C; 50 G; 72 T; 0 other;
     tgttgggacc ttgaacaacc caaatcaaca acttcaccag ctgggctcac ggatggcagt        60
     gaagctgtca tctcgtcgac gccgtgacag cacgcaacta ttgagttagt taaaaagaag       120
     ccaagaaacc gcgaacatct catttccacc attgttattt tataccgtta aatatatcct       180
     ttttaatgtg ttattagttt acgtgtcgcg tttaatcact ctcattccga acggccacct       240
     cggactcgcg tgaccgtaac a                                                 261
//
ID   Gypsy-663_AA-I repbase;    DNA;    INV; 10704 BP.
XX
AC   .
XX
DT   23-DEC-2018 (Rel. 26.04, Created)
DT   23-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-663_;
KW   Gypsy-663_AA-I; Gypsy-663_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-10704
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-10704
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (23-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1424..2830,2743..6858)
FT                 /product="Gypsy-663_AA-I_1p"
FT                 /translation="NKTSIAPERVENKPRRNSDYCLEIQLPVLKPREFIET
FT                 EDSQIWETPQLSSSFNTSKEGKERLQIQEANNYQDQQEELDLDNTSFIETL
FT                 ENLKRKFIRYSEILNKSFGKMAIPIPYDFPMVTEVQCIPEFHGKPEELQPF
FT                 LIQIEYFAGSFPEGAPHAPLLNVVYTKLRGEALFRLQEIQDVTWPGMKAKL
FT                 EKTFQLEKSIGSIIRDIETLIQGNHETFETYKLRAKKLYSYITNLRNYDNN
FT                 SYAGAALRKHFLGGLKSQALALAGKSQRDKTFPELLEWLEREYEEEEELKD
FT                 IHRRLQPNKDGNSPKYNNNTNTYGNQRFQRKNNGFDQNNYQRGNNNSNSTG
FT                 PNKKYQYNQSRREDEINYQPHRYDSGRNNDFNNYRTNGNSTNGNNQWRHNR
FT                 QDSYERNNANYPRYNGTQRQHARQDNYERGSINHSRENRTQWRQDRREGNE
FT                 IVEGYHPRERESQRNHHQQDSSKNTRRKRNSRRIPSKGKRESEKPSPAGQF
FT                 KKLNRWDSQQQELQESQQKYCLSTKTFEKQNPTNISNLSTKQNTNSKHKSD
FT                 WGETVPIKFTRDDRFWLEISTHEAPTIITEFLLDTGAQMNLITAKRATEIG
FT                 VERINTMEFMFMQGITKHSIQSVGSVWVHLKLGQLIIPTKFHVVNDICVPA
FT                 ILGANFIKKHVSAISNNFSEGYFKANAREKQHYEKDERVRVEMIDYMLRNT
FT                 SESKITDHIVDTNSEDVIPHNNLPQEVEQEVEYPEKEEYFDNSVENPELAA
FT                 LNTQMGNIFTIDSQLPQECQKWDDVDQKEDLSLMENKRFPQVKGKSRINQI
FT                 LDTINLKHIKRENYKAMETIIEQYSDVFYLKGDHLTITNAAEHEIETTTTV
FT                 PINKRQYRFPESTKKQINEEIAEMERQGVIQPSKSPWNAPVLCIPKKDLDA
FT                 EGKKKYRIVVDFRSLNLITKPFVYPIPNINEILDDLEDNCFFSTLDLKSGF
FT                 YQVRIHPHDAAKTAFSTPRGHFEFTRMPMGLRNSPSTFQKLMNTVLYSIKD
FT                 VKAIVYLDDIIVFGKTIEEHNENLCKVLEALRKYNLKVEPSKCQILKQEIK
FT                 YLGHIVDKEGIRPMEDNITAIRDMPVPMTQKAVRSFLGTVNFYGKFIPNLA
FT                 EVRKPLNNLLKKNVKFIWTEECQQAFIRLKNFLTSDTILVRPNYKDTFVLT
FT                 TDASDYAIGAVLSNERTTDRPIAFASRALVGAEVRYHTIEKELLAITWAVE
FT                 YFKHYIYNQKFIIYTDHRPLVSIWHLKESSTTLTRLRLKLQGLEFDIKYKQ
FT                 GKDNVVADSLSRLGYTADKVMDKTKSIAAVTRLQKKKTLLTSGEPSRNTDE
FT                 DSTNISILPNYDEDEIVKDDRNSTIDELVNISMEDFKTAVDEDLFDDSKVT
FT                 ISKSIKEENGSDARFVILNSRTAFNELSSLYSWPHGIKDWIEDNLLTHQTR
FT                 KLAGMIIEGKNNSFINQQQFFDLIAKFFNKCPEFIKNAKTIHVISFRKIKQ
FT                 HEILQIIKYIAWKLDINIILYNANDERILIEKEEIETILHEFHDAPLGGHV
FT                 GARRMHIRIGTLFKWPNMRKDIENYVKQCDSCQKNKISTSNKIPMRITTTS
FT                 SEPFQKVYMDIVVLPETHKGNKYGLVIQDDLTRYLTVGAMENQESQTVART
FT                 FVDNFICKFGAPLELVTDQGANFVSKLMKNVCKILKIKKITTTAYHPQANL
FT                 VERSNRELKIYLRQFIGGDPQTWDQLLPHFTFQYNTTNNSSTGFTPFELLY
FT                 GRQARIPNSIYRMKDMELNYGDYSDELKANLKYLHKVAQENLVKSKQKRKE
FT                 IYDRQANEGQPMWGDLVLVQANPTGTGQKLQARWRGPYEVVELPSEQTTII
FT                 KNGNKLEKIHNNRLKIYND"
FT   CDS           join(6761..7969,7896..8942)
FT                 /product="Gypsy-663_AA-I_2p"
FT                 /translation="MKSSNSQANRQQSLKTGINWKRFITIVLKYTTIDTQF
FT                 ISMYICKYLFYVYRKILIFIQLAWFGSGEFVLKKLEEGLIRKGTYYVKVRF
FT                 PTLELEKGTVALREAITNYENTCGKLEQVIPKSHCTLVTSDLMITYNKSRS
FT                 TNNFIKEFFPSRKPRGFITAIGGMDSDDRTRIDENLDKLRKNDETLRTSFI
FT                 HQTATVDAMYKFVDNSMTHIDNKLKQVMENINQIDNIVQENTDFTVSVKRT
FT                 VQLESELIEIGFRIQSLITELNRQQNIILQILLNRNSGLAWFLQLIEPEEL
FT                 VRTIEEAEKTLQNELLFPKIGNDNPLSEILKITEISFATENNQRLTIELKI
FT                 PLVSKTRYRIYKGIFTPQINGSVIMAIDLKKNIIIEDMGKTLGIYSTGIPI
FT                 RKMQNIRQYKIWEKHWGYIVRESQYERCKTFDNTKLCELDTSEENLIEVDE
FT                 CIANLRYKNSTKSCTIKLVRVDHDVWFQTGEANVWGYVTPKEMKIKIHHGF
FT                 NHTDLIIRGSGKIRLTPDMIIKTNNTEITFIHDTQSENVELINTAQYEIRN
FT                 FTWENWKLRSIPTLDANFSKVSFYDHKKLFDLGVDVEDLLKNQPFLESLIY
FT                 SPLSTGWTVTSLGAGALLALGVGISLFICCFKGKITCPQGVEKEPEQQVSS
FT                 LRGQEIIHMGPILKPTIPNKIHNIFANPNLEHHGNIIIETPRHTNDLNLPI
FT                 IEEVEETYMEPTPGPTQEEINLQNVKRVATLQPSENSEQKERRVILPLRIR
FT                 Y"
XX
SQ   Sequence 10704 BP; 4288 A; 1942 C; 2021 G; 2453 T; 0 other;
     agtggtgaca gcggaaaagc gtttcttcaa aacgccggcc gccaacattt ctgactgaaa        60
     aaaaaaggga aagagcaacg aaaactgact gaaaagtgga gataaagtga aaattaactg       120
     gataaagaga ctcaaaaaaa aaatcgtcag gaaagtgaaa ataacaaaaa tcacttcgtg       180
     tacttgttga tttcagtgta gagaagaaaa ttgaagatcc cagacccaac tgagtactac       240
     tgacgaactt tcagttattg tgtttaacgc cagtatcaga acaaataaga tcctaaatgc       300
     aaatcattca cacgaataaa actcttaaac cgcggtcagt tagaacgtga agaaaaaaaa       360
     aagtgcccct aactgtgtta taacttgatc atcaattgat catcaagaag caaatagctt       420
     caccggaacc aggagtaaga atcaactagg atggcgaaaa tcaactggtg agtgcttaac       480
     tttttaaaca ttgagacaca caaaaaatcg agttcgctga gaaaacttta cgcgtagata       540
     ttataaagaa aaattttaca cactccaaaa aaaaaaaaaa atcgtgtgat tttacgtctt       600
     ttgaacgcac ataaaagaag cgagccgaat gacgtgaatt tatgttacat ttcaaatacc       660
     atcgtttttg tgtccattaa cgtgtaaaat tagatttttt tttgttcaat acatcttcaa       720
     ggacacatgt ttgtgtcgtt ttatcattta catcgtgtgt cattcagtca tactatgaat       780
     tacgtccaca gtaatttcca ttatttttaa gagtgtatgt ttcgtaaatg aatataatgc       840
     gtaaaattaa cattgaattt acttgtccca gaatatgata cctttgcgtg gtaaatattg       900
     tagatctgcg cagatggttc atagcaaaat attaaaggca cttcaatacc taattttttt       960
     tcgcaacgaa aacaatagca cctttttgcg ccatccgctg gaataaaact cccctcccgc      1020
     aaccaaattc aaccaagcgc cagcagttgc ctgctcggag agcgttaatt actagcacca      1080
     cataatgcaa taagggtatg cgttatgagc atttttcgtg tcaacattat ccattttaag      1140
     tcgagaaatt gttaaattat taaacaagtc ttgccgaatg acaagactag acgaaataaa      1200
     ggagtacgtg gagagggaat ttaaaaatct ttgtaaaagt aaaaatagag caaggtcact      1260
     acaaggtatt ctggcaaaac aagaactcct taaagaccac cttgtcgaat ttgagacgct      1320
     agtgaaaact tatgagcaca gactcaatac agaagattgg aacagattga ctgacgactt      1380
     agaattcgtc aagacaagag taaaccaatc tttgaatatt taaaataaaa catcgatagc      1440
     cccagaaagg gtagaaaaca aaccaaggcg taactcagac tactgtctgg aaatacaact      1500
     gcctgtatta aaaccaagag agttcataga aacagaagat agccagattt gggaaactcc      1560
     acaattatca tcatcattca atacctcaaa agagggaaaa gaacgattac aaatccaaga      1620
     agcaaacaat tatcaagacc aacaagaaga attggatctc gacaacacga gtttcattga      1680
     aacacttgaa aatctaaaac gaaaatttat tagatacagc gaaatactaa ataaatcgtt      1740
     cggaaagatg gccattccta ttccttatga cttccccatg gtaacggagg ttcaatgcat      1800
     cccagaattc catggaaaac cggaggaact tcaaccgttc ctcattcaaa tagagtattt      1860
     cgctggtagt tttccagagg gagctccaca tgcaccccta ttgaatgtgg tatatacaaa      1920
     gctaagaggg gaagcactat ttcgcctcca ggagattcaa gatgtaacat ggccaggaat      1980
     gaaagctaaa ctagaaaaga cattccaact agaaaagagc attgggtcga ttataagaga      2040
     tatcgaaact ctaatccaag gaaaccacga aacgttcgaa acctacaaac ttagagcaaa      2100
     aaaactctat tcatatataa caaacctcag aaattatgac aacaattcat atgccggagc      2160
     ggccctaagg aagcatttct tagggggact caaaagccaa gcattagccc tagcaggaaa      2220
     gtcgcaaagg gacaaaacat tccctgagct tcttgaatgg ctcgaaagag aatatgaaga      2280
     agaagaggaa ctgaaggaca tacatcgacg acttcagccc aataaagatg gaaactcgcc      2340
     aaaatataat aataatacca acacatatgg aaatcagcga ttccaaagga agaataacgg      2400
     cttcgatcaa aacaactatc aacggggcaa caacaatagt aattccactg gtccaaataa      2460
     gaagtaccaa tataatcaat caaggagaga agacgagatc aactaccaac ctcaccgtta      2520
     cgatagcgga agaaataatg acttcaataa ttacagaaca aatggaaata gcacaaatgg      2580
     aaataatcaa tggcgacaca acagacagga tagctacgaa agaaacaacg caaactatcc      2640
     aagatataat ggaacacaaa ggcagcatgc tagacaagat aactacgaaa ggggaagtat      2700
     aaaccattcg agagaaaata gaacacaatg gcgacaggat agacgagaag gaaacgaaat      2760
     agtcgaagga taccatccaa gggaaagaga gagtcagaga aaccatcacc agcaggacag      2820
     ttcaaaaaac taaataggtg ggattcccaa caacaggagt tacaggaatc ccaacaaaaa      2880
     tattgtttga gtacaaagac atttgagaaa caaaatccaa ccaatatttc caacctcagc      2940
     accaaacaaa acacaaattc gaaacataaa tcagattggg gagaaacagt acccatcaag      3000
     ttcaccagag acgaccgatt ttggttggaa atcagcaccc atgaagcccc aacaataatt      3060
     acagaattct tactggacac cggagcgcaa atgaacctca tcaccgcaaa aagagcaact      3120
     gagatagggg ttgaacgaat aaatacgatg gagttcatgt ttatgcaggg gattaccaaa      3180
     cattctatcc aatctgttgg atcagtatgg gtccatctaa aattagggca gctcataatc      3240
     ccaacaaagt ttcatgttgt taacgacata tgcgtcccag caattttagg tgctaatttc      3300
     atcaagaaac acgtaagcgc catatcaaac aatttttctg aaggatattt caaagcaaat      3360
     gcccgcgaaa aacaacatta tgaaaaggac gagagagtac gagtagagat gatagattac      3420
     atgcttcgaa acacctccga gtcaaaaata acagatcaca tagtcgacac taattctgaa      3480
     gacgtgatac cacataataa cctcccccaa gaggtagaac aagaagtaga atacccagaa      3540
     aaagaggaat actttgacaa cagtgtcgaa aatccagagc tagcagctct caatacccaa      3600
     atgggaaata tattcaccat cgattcacaa ctaccacaag aatgtcaaaa atgggacgac      3660
     gttgaccaaa aggaagatct cagtttgatg gaaaacaaga gatttccaca agtcaaagga      3720
     aagagtcgca tcaaccaaat acttgacaca atcaacttga agcacattaa acgggaaaac      3780
     tataaggcaa tggagacaat catagaacaa tacagtgacg tgttttactt aaaaggggat      3840
     cacttaacaa tcacgaatgc cgctgagcac gagatagaga caacaacaac cgtcccaata      3900
     aacaaacggc agtatagatt cccagaatca actaagaaac aaattaatga ggaaatagca      3960
     gaaatggaaa ggcaaggggt aatccaaccc agcaagagtc catggaatgc tccagtttta      4020
     tgtataccta aaaaggacct agatgcagaa gggaagaaaa agtaccgtat agttgtagac      4080
     ttcagatcac tgaaccttat aactaaacca tttgtatacc cgatacccaa tattaacgaa      4140
     attttggacg atcttgaaga taattgtttc ttctcaactt tagatttaaa atctggattc      4200
     tatcaagtac gaatacatcc acacgatgca gctaaaacag ccttctccac ccctagaggt      4260
     cattttgaat tcacaagaat gccaatggga ctgagaaaca gtccatcaac attccagaaa      4320
     ttgatgaata cggtactata cagtatcaaa gatgtgaaag ctatcgtcta tttggatgac      4380
     attattgttt tcggaaaaac aatagaagaa cacaatgaaa acttgtgtaa ggttttagaa      4440
     gcactgcgga aatacaattt aaaagtagag cccagcaaat gtcagatatt gaaacaggag      4500
     atcaaatatt tgggacacat agttgacaag gaaggaatac gcccaatgga agacaatatt      4560
     actgccatcc gtgacatgcc agtcccgatg actcaaaagg cagtaagatc gtttttaggt      4620
     acagtaaatt tctacggaaa gtttattcca aacttagcag aagtaagaaa accattaaat      4680
     aatctactga aaaagaacgt aaaatttata tggacagaag aatgccagca agcatttata      4740
     aggttgaaaa acttcttgac atccgacaca atattagtac gaccaaatta caaggatacg      4800
     ttcgttttaa caacagacgc cagtgactac gccataggtg cggttttatc aaatgaaaga      4860
     accacagata gacctatagc tttcgcgagt cgagctctag tgggagcaga agtcagatat      4920
     catactattg aaaaggaact attagccatc acatgggctg tagaatactt caaacactac      4980
     atctacaacc agaagttcat tatatatacc gatcatagac cactggtatc tatatggcac      5040
     ctaaaggaat cgtctacaac cctgacaaga ctgagattaa aactgcaagg actggaattt      5100
     gatatcaaat ataaacaagg aaaggataat gtagtagccg actctctgtc acgactagga      5160
     tatacggcag acaaagtaat ggataaaaca aagagcatag cggcagtaac aaggttacag      5220
     aaaaagaaga cattactgac gagtggggaa ccaagcagaa acacggacga agacagtacc      5280
     aatatatcta tcctgccaaa ctacgatgaa gatgaaatag ttaaggatga ccgaaacagt      5340
     acaatagatg aattagtaaa catatcgatg gaggacttca aaaccgctgt cgatgaagat      5400
     ttatttgatg attctaaagt tacaatttcg aaatcaatca aagaagaaaa cggaagcgat      5460
     gcgagattcg taatattgaa cagtagaact gcatttaatg aactatcatc gctttacagt      5520
     tggccccatg ggattaaaga ttggattgag gataatctcc taacacacca aacaaggaag      5580
     ttagcaggaa tgataataga agggaagaac aattccttta ttaatcaaca gcaatttttt      5640
     gacctaattg caaagttttt taacaaatgt ccggaattta taaagaatgc gaaaacgatt      5700
     cacgtaatct cattcagaaa aattaagcaa cacgaaattc ttcaaataat aaaatatatt      5760
     gcatggaaat tggacataaa catcatactt tacaatgcaa atgatgaaag gatcctcata      5820
     gaaaaggaag aaattgaaac catcctgcat gaattccatg atgcgccatt ggggggacat      5880
     gtgggagcaa gaagaatgca tattcgaata ggtacacttt ttaaatggcc caatatgagg      5940
     aaagacatag aaaattacgt aaaacagtgt gattcatgtc aaaagaacaa aataagcacc      6000
     tcaaataaaa ttccgatgag aatcacaacc acgtcctcag aacccttcca gaaggtctac      6060
     atggacattg tggttttgcc agaaacacac aaaggcaaca aatacgggtt agtcatacaa      6120
     gatgacttaa ccagatatct aactgtagga gcgatggaaa atcaagaaag tcaaacagtc      6180
     gcaagaacat ttgtagataa ctttatttgt aaatttggag ctcccttgga actcgtgacg      6240
     gaccaaggag ctaactttgt aagcaagctc atgaaaaacg tttgcaaaat tctcaaaatc      6300
     aagaaaatca caactacagc ctatcatccc caggcaaatt tagttgaaag atcgaacaga      6360
     gagttgaaaa tttatttacg gcaatttatt gggggagacc cgcaaacttg ggatcaactc      6420
     ttaccacact ttacattcca gtataataca acaaataatt catcaacggg ttttacacca      6480
     tttgaattac tgtacggaag acaagctaga attccaaatt caatttacag aatgaaagat      6540
     atggaattaa attacggaga ttattcggat gaattgaagg caaatttaaa atatctgcat      6600
     aaagtagctc aagaaaatct ggtgaaatca aaacaaaaac gaaaagaaat ttatgacagg      6660
     caagccaacg aggggcaacc catgtgggga gacctagtat tagtccaagc aaaccccacc      6720
     ggcacaggcc aaaagttaca agcgcgatgg agaggaccat atgaagtcgt cgaactccca      6780
     agcgaacaga caacaatcat taaaaacggg aataaactgg aaaagattca taacaatcgt      6840
     cttaaaatat acaacgattg atactcaatt tatttctatg tatatatgta aatatttatt      6900
     ctatgtttac aggaaaatat taatattcat ccaactggcg tggttcggga gcggagaatt      6960
     cgtcctaaaa aaattagaag aaggactcat cagaaaggga acgtactacg ttaaggtaag      7020
     gttcccaaca ctagaattag aaaaaggaac agtggcgcta agagaagcaa taacaaatta      7080
     tgaaaataca tgcggaaagt tagagcaagt gattccgaag tcgcattgta cattagtgac      7140
     aagcgacctc atgatcacat acaataaaag cagaagcaca aataacttta taaaagaatt      7200
     tttcccgtcg aggaagccgc gaggtttcat aactgcaatt ggaggtatgg attcagacga      7260
     tagaacccga atagacgaaa atttagacaa acttaggaag aacgatgaaa cacttagaac      7320
     atcattcatc caccaaaccg caaccgtcga cgcaatgtac aaattcgtcg ataactcgat      7380
     gacgcacatc gataacaagc taaaacaagt aatggaaaac ataaaccaaa tagacaacat      7440
     tgtccaggaa aatacagatt ttaccgtttc agtaaaaaga acagtgcaac tagaatcgga      7500
     attgattgag attggcttca ggatccaatc actaatcacg gaattgaaca gacaacaaaa      7560
     tatcattttg caaattctcc tcaatagaaa cagcggttta gcttggttcc tacaattaat      7620
     agaacctgaa gaactggtaa gaactattga agaggcagag aaaacgttac aaaatgagtt      7680
     attgtttcca aaaataggaa atgacaaccc actatcggag attttaaaaa tcacagagat      7740
     ctcgtttgca acagagaata atcagcgatt aacgatcgaa ttgaaaatac ccctagtctc      7800
     caagacgaga tacagaattt ataaaggaat ttttactccc caaatcaatg gatccgtaat      7860
     aatggccata gacttgaaga agaacataat catagaagat atgggaaaaa cactggggat      7920
     atatagtacg ggaatcccaa tacgaaagat gcaaaacatt cgacaatact aaactgtgcg      7980
     aattagatac aagcgaagaa aatttaattg aagtagacga atgcatagcg aatttgagat      8040
     ataaaaattc cacaaaaagc tgcacaatta aattagttag agtagaccac gacgtctggt      8100
     tccaaactgg agaagcaaat gtatggggtt atgtaactcc aaaagaaatg aaaataaaga      8160
     tacaccatgg gtttaaccat actgatctga ttataagagg ctcaggaaaa atacgactca      8220
     caccagatat gattatcaaa accaacaata cagaaattac gtttatacac gatacgcaat      8280
     cagagaacgt agaactgata aatacagcgc aatacgaaat tagaaatttc acatgggaaa      8340
     actggaaatt aagatcaatt ccaacccttg acgctaactt ttcaaaagtt tcattttacg      8400
     accataagaa actctttgac ctaggcgtag acgtagaaga tctcttaaag aatcaaccgt      8460
     ttttagaaag cctaatttat tctccactct cgacagggtg gacagtaacc agcctaggag      8520
     cgggagcttt gttagcattg ggagtcggaa taagcctttt tatttgctgt tttaaaggga      8580
     aaatcacatg cccccagggc gtagaaaaag aacccgaaca gcaagtctct tccttacgag      8640
     ggcaagaaat aatccacatg ggtccaatac tcaaacctac cataccaaac aagatccata      8700
     atatttttgc aaatccaaat ctcgagcatc acggtaatat aattatagaa acaccaaggc      8760
     acaccaatga tctgaattta cctatcatag aagaagtgga ggagacatac atggaaccaa      8820
     ctccaggacc aactcaagaa gaaataaact tgcagaatgt aaagcgagta gcaacactac      8880
     agccatcaga aaattcggaa cagaaagaac ggagagtaat tttacctcta cggataagat      8940
     attaaaacaa agtaatcaag aaaacaaaat aatcaaggat taacagttgg accttgacaa      9000
     aaaaaaaata ggggcacgag acaaagaagt gacgtgccta cagctaatta taacaaaaat      9060
     gcgtccgtca aactcagttt tgaacgtacc gaagagctgg aaataccaga ataggaaact      9120
     attctgtaag ggtcgttacc ctctggaaaa gtgggaaatt gaaaacacac tttgtgacaa      9180
     accattttta taacttgaat taatatgagc aaacgaggtt ttcattcaca gatcctgcct      9240
     gcaacctcaa aagaaagggg ggaggtcacc aagcgagaaa gaacaaacct tacagatgga      9300
     gacggataac ggatcagcac agaaagaagg tatcctagat ataagaaaat gaaaaatttt      9360
     acaacttgag aaataaaaaa aaaaaaaatt aataaatcaa aacttgaact gcaaaaacaa      9420
     aacaaactaa aaacaaattg acttaaagtc gaaagtttca cgaaatttta agaaaatgat      9480
     ttattttact tcgtcaaaca aataatgcta gaaaaacact attctttgac atatttaaag      9540
     ttgtatatat tacacgtaga aggtatgaaa gataatgtat aaatattgta agctcaagcg      9600
     aaaacaaaaa caaaaaggaa aaagagacca acaaaatcca caaaagatat taaaatcctt      9660
     taaaactgag caaaacgaaa agatgtgaga tttccaaaaa aaaaacacaa caaataaata      9720
     atagaaaaaa aatatatata tattgggact caccaaactg tagatagtag gatagtagat      9780
     atgaatagtt ctaccatata gtaggaataa aatacaatag aataatatag aataggaaaa      9840
     taggtcatag gcagcagtag tcctttggag tgtacactgt tccaccgaag gagagtgaaa      9900
     gtaatcatcg ggagcgccaa agaaggaaga cagtggaaca aagaacgtgt aatggttgac      9960
     atctagaatt cgtacaaatc aacacccgtc gcgtcttgat cgaataacca ttctgatgtt     10020
     gaggtagatg atgtaaaagg gaggaatgat gacgtaaaca tagcacgaaa tggagatgtg     10080
     acaagctgga gctgaataat agatgattat ccaagataac ggttatccaa gataacgatt     10140
     atccaaggta acaaagaaaa aaaatgacat attaatgtct taagtaaaca attttacttt     10200
     gaacttggtc agaaaagcca atatgatata acggacaaat cgaacatagc ttagacaaga     10260
     aaggccattg gtgccgacaa cgattcgtgc acagaggaca aattcacctc agttgttcat     10320
     gatactacga aaagtcatca acatagacca aaatgggaca ataggctaca tcaagtcacg     10380
     aaggaaatta gatgccgatt accattgaga tcaaagattc agaaatgagg ctaggaaaaa     10440
     gacgaaagga gtcgacagaa atggatggtg gacacaacag tgggcacaac gaaggatgac     10500
     ccagcggtta gagatatagg aacacaaatt ctttataatg tacatagcga aggaatcagt     10560
     taacgtttta aatgttagaa ccaaaaatag gttgagtagg gattttacat gtaccaacaa     10620
     taattattct agcaagccaa atatgccttc tccgtgtttt taattcgaaa ggatttaatt     10680
     aaaaactcga atggttgggg cgta                                            10704
//
ID   Gypsy-663_AA-LTR repbase;    DNA;    INV; 965 BP.
XX
AC   .
XX
DT   23-DEC-2018 (Rel. 26.04, Created)
DT   23-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-663_;
KW   Gypsy-663_AA-I; Gypsy-663_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-965
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-965
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2080-2080 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 965 BP; 273 A; 196 C; 233 G; 263 T; 0 other;
     tgtaccagcc tagcatcatg atacggtact ttctacgtat ccgggaaatg atggttttct        60
     tgcaattagc ctgacgaagc aaagtaacgg atgcttcctc gttgcagtgg tttgttgcgt       120
     aactgcaaat aaccagaagt caatttgctt ttgtttgttt taccttggcc gacagtgcca       180
     aatttaaagt gacataattt taccgctatg gagtaaagca aacaaacgtg cgcgagaact       240
     tttttactta cgcagctttc tggtttgctt agccctatag gcggcgggta atcgtattgt       300
     tttgcttaag tttttcattt cagccacacc acaaaccgcg aagaacggtg actcacatgc       360
     ggattttgtt acgctcatcg ctcacggatc gttagaacaa gacgacaagt tctaccaatt       420
     aagagagtga gttcctcgcc agggggtgga atcaaccctt taaaaaccga cccgccaaga       480
     tggaagagcc tcggtgtgaa gaaagtgtac gacgtccgca gttctgacgg tcccccagtt       540
     cggacgaggt gtgccgttcg ttttcgacat tttcgttcaa agttcagtgg gcattttctg       600
     ccaaattgac gagcgggcca attcgggtcg agagtgtttg gtagtgatat aaggtggata       660
     aagtataggt ggataaagta tatttcggga aattggtgga accacccaca tacgctatca       720
     gaatcgaggg taaagtgaaa gtgtctcaat cgattcctta agaacgattc taagggtgga       780
     aagctagtga attgtgacga cctttttagt aataaataaa actgttagaa gaaaacagag       840
     tgatcaatat tccgaaaaaa accagtgacc tagccggggg gaatggccgc tacaagtggt       900
     gacagcggtg ttgcttttag tgtgaacatc aataaaactt tcctcattaa aaccaccccg       960
     ctaca                                                                   965
//
ID   Gypsy-664_AA-I repbase;    DNA;    INV; 10206 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-664_;
KW   Gypsy-664_AA-I; Gypsy-664_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-10206
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-10206
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3222..3851,3755..5752,5691..7295,7265..7618)
FT                 /product="Gypsy-664_AA-I_1p"
FT                 /translation="HHARSWKRFLCRINTTKTFFGGPTKPQRDKNFLELVQ
FT                 WLEIEHEEEEELREIHKRVHQQEPEPSYACQRTRNNQYNNALKQSYPNNNS
FT                 GYRGNFRKDQGNNYDSHRNDYPGKRENNRQPYENQNGNRFYNQGYRNFNNT
FT                 GQHSQNFNNAGQNQGYRNFNNSREAQATKNNYDNAKSNEGERSYFPQVREF
FT                 GQNWRMQRNPQDNRRDGSKNRRTELLPSGKRIRPKLAYATQPPRQQTRWVK
FT                 KLNRLDSDEQELQESQQKHCLITEKLEKQNTNPENISDCEETVPIKFTRDD
FT                 RFWLEISTHEAPTITTEFLLDTGAQMNLITAKRAAEIGVERINTREFIFMQ
FT                 GITNHSIQSIGSIWVHLKLGKIIIPTKFHIVNDISVPAILGASFIKKHVSA
FT                 ISDNFSKGHFKTNARKKPDYDTGDRVRIEMVDYMLQNTFESKVKDYIIDNN
FT                 SGNAAINNNLPQDEEQEENYPEEEEYFDNSVSNPELADLNRQMGQVFTIES
FT                 QLSLQQDDYHEWDNIGQKEDISLTENKRFTQGRNRIDQLLDTINLQHIKHE
FT                 SLKPMKSIIEQFSDVFYLKGDHLTITNAAEHEIETTTNIPINKRQYRFPES
FT                 TKRQINEEIEGMERQGVIQPSKSPWNAPVLCTPKKDLDAEGKKKYRIVVDF
FT                 RSLNLIPKPFVYPIPNINEILDDLEDNCFFSTLDLKSGFYQVPIHPHDAAK
FT                 TAFSTPRGHFEFTRMPMGLRNSPSTFQKLMNTVHYSIKDVKAIVYLDDIIV
FT                 FGKTIEEHNETLCKVLEALRKYNLKVEPSKCQILKQEIKYLGHIVDKEGIR
FT                 PLEDNITAIRDMPVPMTQKAVRSFLGTVNFYGKFIKNIAEVRKPLNNLLKK
FT                 NVKFKWTEECQQALERFEELFDINLNGRKNVNRHLNVLKNFLTSDTILVRP
FT                 NYKDTFVLTTDASDYAIGAVLSNERTSDRPIAFASRALVGAEVRYHTIEKE
FT                 LLAIAWAVNYFKHYIYNRKFIVYTDHRPLISLWHLKETSPTLTRLRLKLQG
FT                 LEFDIRYKQGKDNVVADFLSRLGQAGDSKKDKTKTIAAVTRLQKRKELQMN
FT                 DNTEENTDKDIDNLSILQNYDEEEIVMNSQDSRMDELVNISMEDFKHALEE
FT                 DLIDDSKVTISKSIKDENTSDARFVILNSKTAYNELTSLYNWPHGIKDWVV
FT                 DNLWTHQTRKLAGIILEGKKNSLINQQKFFELIANYFNKAPDFVKNAETIH
FT                 INSFRKIKQHEILQIIKYIAWKLDVSIILYNADDERILIEKEEIETILHEF
FT                 HDAPLGGHVGARRMHIRLGTLFKWPNMRKDIENYVKRCDSCQKNKIWSHNK
FT                 IPMTITSTSAEPFEKVYIDIVVLPESDFGNKYGLVMQDDLTRFLIVAPMEN
FT                 QESETVARTFIENYICKFGTPAELVSDQGANFMSEVFRKICKILKLKKKNL
FT                 QNSKIKKINTSAYHPQANLVERSNRELKTYLRQYIMGKPHVWDQHLPYFMF
FT                 EYNTTINSSTKCTRFGRKARLPTSVYNPRNNGLNYDDYTNEMKGIFKNLHS
FT                 KARENLIESKEKT"
XX
SQ   Sequence 10206 BP; 4101 A; 1763 C; 1868 G; 2474 T; 0 other;
     agtggtgaca gcggaaaagc gtttcttcaa aacgccggcc gccaacattt ctgactgaaa        60
     aaaagggaaa gagcaacaaa aactgactga aaagtggaga taaagtgaaa attaactgga       120
     caaagagact caaaaaaaaa atcgacagga aagtgaaaat aacaaaaatc acttcgtgta       180
     cttgttgatt tcagtgtaga gaagaaaatt gaagatccca gacccaactg agtactactg       240
     acgaactttc agttattgtg tttaaagcca gtatcagaac aaataagatc ctcaatgcaa       300
     atcattcaca cgaataaaac tcttaaaccg cggtcagtta gaacgtgaag acaaaaaaaa       360
     gtgcccctaa ttgtgttata acttgatcat caagaagcaa atagcttcac cggaaccagg       420
     agtaagaatc aactaggatg gtaaacacaa catggtgagt aattacaact taaattcata       480
     aggctattct ttttatactt ttatactttt ggggtaattt attgacaaaa tgttgcagtt       540
     ttttttcaaa acttgtttgg aaaaaacaca tacatttcct agtataacaa atattactaa       600
     gtccagtact tgaaattttc gtaacaaaaa caacagcacc ttttacgccg tgcacttgaa       660
     taaaaccccc ctcccgcaac caaattaaac cgaacaccag ctacaccact cagagaatgt       720
     tgactgcggg ttcattcttg cacacctgaa aaaaaaatat taggcaccac ttcgatacat       780
     agcccacatg cgggtacgat aacgttttca atgaattaaa tcagtgagca ccgcaactcg       840
     cgaaaaaatt gttgcactcc aattaattaa cgattaacca agcgctcaag tgcactgagt       900
     gttacaatta tgattcatat gcgccaatgg ggctaagaag tggaggagaa aataacaaat       960
     ggacactcta gtatcattgc gacgaacagg gctgctcgtc aaaaattttc gtacactagt      1020
     acacaatgcg ttaaaaccaa gtttgtgtca acaaaaaaaa acagtatgtc gatattgtaa      1080
     cttatatacg gcgataattt tcaaatctat atacactata cacatgccat tagaagaacc      1140
     taaagtttgt gtcacttcta tcacctcgat aggggattga atcttagcaa tcaaaaccat      1200
     aattgagctc aaacatttta ataaattgag aagaagttat atcttttctt ctcttattct      1260
     gcttaacgaa gtctatacaa caaccgaatg acgagattag acgagataaa agattatgta      1320
     gatagagaat ttaaaaacct taagcaaaaa tagagaattt aaaaaccaaa agcaaaaatc      1380
     gagcgagatc attacaagga attttaacca agcaagagct ccttaaagat catctcgaag      1440
     aatttgaaac acgtataaaa acatatgagc ataggcttag aacggaagac tggaataaat      1500
     taaccgatga cttagaattt gtcagaacaa aagttagcca gtccttaaaa atcttaagtg      1560
     gaacagcaat aaccccagaa agggtaggaa accagcaaag acggaactcg gactattgcc      1620
     tggagataca tattcctgca ccagaacaag aagaaattag tcagatctgg gaaaccccca      1680
     gttatcatct tcactcaaca catccaagga gacaaaagaa ctcccacaat tcctagaata      1740
     cgtagattta ggacaggcag cactagaaga aagcaccaat caagaacgaa tagaagaaat      1800
     cgatcttgat aacactagct tcattaagac actagataac ttaaaaacaa aattttatcg      1860
     ttatagttgc attttaaata acccatttat aaaaatggct aacgaaaacg aatataaatt      1920
     tccgatggtg gaagctgtac agtgcattcc gcaatttcat ggcaagacag aggaattaag      1980
     accttttgta atgcaagtag aatatttcgc aaatacgcta cctagaaacg cggatcatac      2040
     acctcttcta aacgtggtct acaccaaatt gcgaggagaa gcattaatgc gtctcgccga      2100
     aattgaaagt gaaacatggc cggaggttaa agaaaaacta gagaaaaagt ttgaggcaaa      2160
     gagcattggc tcaataataa aagacataga aacgctgaat caaggtgaca cagaatcatt      2220
     cgaaagctac acgcagagga aaatattgta aaggctatag gattctgcat tgaatcaaca      2280
     aattttattg ttgactcacg gcttaccagc tacttttttc atttcaataa aattgcttat      2340
     ttatttcaaa aaataaattt gttgtttcta aaaattctca aaaacagata attctcaaag      2400
     acaaaagtga gatattgttg aaacaacaat tataatttat agaatctata aaaactgtgt      2460
     attgattcaa atagagtagt tgttttgaaa ccaaaaacat gtttgttgag ttttttattt      2520
     gttttgcgtt tttttacttt tctgcatatt tgatcatcga tgtacaatta aatattgtga      2580
     taactatatc ataatatgct gatgaacgaa cattatatta tacaagacca tcgctaatag      2640
     aaagtacgtg gcgatagtca tttttcactt tgtagttcca aaatactacc gtgttacatt      2700
     tcctgtgtca tttggtttgg cctggattat tggtggctta gttctaaaaa ggaataatat      2760
     gaaattattt cacctttttt caataattca caaattacct gcagcagctt tttcattttt      2820
     gatttcaact tgactctgtc cgtccaagcc agtgattaac aagattttct tttcaagttt      2880
     tcttctaata cttttgcata ctgattcact aaaattttcg taaacacaaa atgataacag      2940
     tttttttttt gtttcaatca ttcaacattt ttgattcgat agaacttaat ttttgattca      3000
     acaaataaaa ctaatcaaaa tcaaaatcaa gccgtgaaat atatttctac tcgaaatttt      3060
     gttgttttaa aaaattgaac tgcattgaag taaacaaata aatgtattaa ttcaatggac      3120
     atgtaatagg ttatatctaa tgacagtatt ttttggaaca acacagcagt tttattctgc      3180
     gtgtataaga caagggcgat aaagctatac agatacatta gcaccatgcc agatcatgga      3240
     aacgattctt atgtaggatc aacactacga agacattttt tggggggcct acgaagccgc      3300
     aaagagacaa aaacttcctg gagctagtac aatggcttga aattgaacac gaggaagaag      3360
     aagaactaag agaaatccat aaacgggtac accagcaaga accagaacca tcatatgcgt      3420
     gtcagagaac cagaaataat cagtacaata acgcattgaa acagagttac ccaaacaaca      3480
     attcaggtta tagaggtaat tttagaaaag accaaggaaa taactacgac tcacacagga      3540
     acgactaccc aggaaaaaga gagaacaata ggcaacccta cgagaaccaa aacggaaata      3600
     gattttacaa tcaaggatat cgaaatttta acaacacagg gcaacacagt caaaatttca      3660
     acaacgcagg tcaaaaccaa gggtaccgta atttcaataa ctcacgcgaa gcacaagcga      3720
     ctaaaaataa ttatgacaat gcaaaatcaa atgaaggaga acggagctac ttccctcagg      3780
     taagagaatt cggccaaaac tggcgtatgc aacgcaaccc ccaagacaac agacgagatg      3840
     ggtcaaaaaa ctaaataggc tggattccga tgaacaggag ttacaggaat cccaacaaaa      3900
     acattgtttg attacagaga agttggaaaa acaaaataca aatccggaaa atatatcaga      3960
     ctgtgaggaa acagtaccca tcaaattcac cagagacgat cgattttggt tggaaattag      4020
     tacacatgaa gccccaacaa ttacaacgga attcttacta gacaccggag cgcaaatgaa      4080
     cctcatcacc gcaaaacgag cagctgaaat aggggttgaa cgaataaata cgagggaatt      4140
     catatttatg caagggataa cgaatcattc cattcaatct atcggatcaa tatgggtcca      4200
     tctgaaacta gggaagatca taatcccaac caagtttcat attgtcaacg atataagcgt      4260
     tccagcaatt ttaggcgcaa gcttcattaa aaaacacgta agcgctatat cagacaattt      4320
     ttccaaagga catttcaaaa caaatgcccg caagaaacca gattatgaca caggagacag      4380
     agtacgaata gaaatggtgg attacatgct ccaaaatact tttgaatcaa aagtaaagga      4440
     ctacataatc gataacaatt cgggaaatgc agcaataaac aataaccttc cccaagacga      4500
     agaacaggaa gaaaactatc cagaagaaga ggaatacttc gacaacagtg tctcaaaccc      4560
     agagctagca gatctcaaca gacaaatggg acaggtattt accatcgaat cacaactgag      4620
     cctccaacag gatgactacc acgaatggga caatataggc caaaaggaag atattagctt      4680
     aaccgagaac aagagattca cacaaggaag gaatcgaatc gaccagctac tggatacaat      4740
     caacttgcag catataaaac atgaaagtct taagccaatg aagtccatta tagaacaatt      4800
     cagtgacgta ttttacttaa aaggcgatca tttaacaatc acgaatgccg ctgagcatga      4860
     gatagagaca acaacaaaca taccaatcaa caaacgacaa tatagattcc cagaatcaac      4920
     taagaggcaa ataaatgagg agatagaagg aatggaaagg caaggagtaa tccaacccag      4980
     caaaagtcca tggaatgcac cagtcctatg cacacctaaa aaggacctag atgcagaagg      5040
     gaagaaaaag tatcgtatag ttgtagactt cagatcactg aaccttattc ctaagccatt      5100
     tgtatacccc atacccaata ttaacgaaat cttggacgat cttgaagata attgtttctt      5160
     ctcaacttta gatttaaaat ctggattcta tcaagtacca atacatccac acgatgcagc      5220
     taaaacagcc ttctccaccc ctagaggtca ttttgaattc acaagaatgc caatgggact      5280
     gagaaacagt ccatcaacat tccaaaaatt gatgaatacg gtacattaca gtattaaaga      5340
     tgtaaaggct atcgtttatt tagatgacat tattgttttc ggaaaaacaa tagaagaaca      5400
     caatgaaacc ttgtgtaagg ttttagaagc actgcgcaaa tataatttaa aagtagagcc      5460
     cagcaaatgt cagatattaa aacaggagat caaatatttg gggcacatag ttgacaagga      5520
     aggcatacgc ccattggaag acaatattac agctatccgt gacatgccag tcccgatgac      5580
     ccaaaaggca gtgagatcgt tcttaggtac agtaaatttt tatggaaaat ttattaaaaa      5640
     catagccgaa gtgcggaaac cattaaataa tctactgaag aaaaatgtga aatttaaatg      5700
     gacggaagaa tgtcaacagg cacttgaacg ttttgaagaa ctttttgaca tctgacacaa      5760
     tattagtacg cccaaactac aaggatacct tcgtcttaac aacagatgcc agcgattacg      5820
     ccataggggc agttttatca aatgaaagaa cctcagacag acctatagct tttgcgagtc      5880
     gagctctagt aggagcggaa gtaagatatc atacaattga aaaagaatta ttagcaatag      5940
     catgggccgt taattatttt aaacattaca tttacaatcg aaagtttatc gtttacactg      6000
     atcatcgtcc attgatatca ctatggcacc taaaagaaac atctccgact ttaacaaggt      6060
     taagactcaa actacaagga ctcgaatttg acatcagata taagcaagga aaagataacg      6120
     tagtagctga cttcctatca cgactagggc aagcaggaga cagcaaaaag gataaaacaa      6180
     agaccatagc agcagtaaca aggttacaga aaaggaagga attacaaatg aatgataaca      6240
     cagaggaaaa cacggataaa gacatagaca atctatctat cctacagaac tatgatgaag      6300
     aagaaatagt tatgaatagc caggacagta ggatggatga attagtaaat atatcaatgg      6360
     aggacttcaa acacgctctc gaggaagatt taatagacga ctcaaaagta acaatatcaa      6420
     aatcaattaa agacgaaaat acaagtgacg caagatttgt tatattgaac agtaaaacag      6480
     catataatga actgacatca ctttataatt ggccacatgg gataaaagat tgggttgtgg      6540
     ataatctctg gacacaccaa acaaggaagt tagcaggaat aatattagaa gggaagaaaa      6600
     attcccttat caaccaacag aaattttttg aacttatagc taattatttt aacaaagctc      6660
     cggactttgt aaagaatgca gaaacaattc acataaactc attcagaaaa attaagcaac      6720
     acgaaatctt acaaataatt aaatacattg cttggaaatt agatgtaagc atcattctat      6780
     acaacgcaga tgatgaaaga atccttatag agaaggaaga aatcgaaaca atcttgcatg      6840
     agttccatga tgcaccatta ggaggacatg tgggagcaag aagaatgcat attcgattag      6900
     gcacactttt taaatggcct aatatgagaa aagacataga aaactacgta aaaaggtgtg      6960
     actcgtgcca aaaaaataaa atttggagcc acaacaaaat tcctatgaca ataacttcaa      7020
     catcggcgga gccatttgag aaagtttaca tcgatattgt cgttttacca gaatctgatt      7080
     ttggaaacaa atatggactt gtaatgcaag acgatctcac aagatttttg atagtagcac      7140
     caatggaaaa tcaagaatct gagacggtcg caagaacatt cattgaaaat tacatttgca      7200
     aattcggaac acctgctgag ttagtctccg atcaaggcgc taacttcatg agtgaagtat      7260
     ttagaaaaat ttgcaaaatt ctaaaattaa aaaaataaac acgagcgcat atcatccaca      7320
     ggctaatttg gtcgagaggt caaatcgcga gctaaaaaca tatcttaggc aatatattat      7380
     gggaaaacca catgtctggg atcaacatct accgtatttc atgttcgaat acaacacgac      7440
     tataaactcg tcgacaaaat gtactcgatt tggtcgtaag gcaagattgc caacgtcagt      7500
     atacaacccg agaaataacg gattaaacta cgatgattac actaatgaga tgaagggaat      7560
     atttaaaaac ctacactcaa aagccagaga gaatcttata gaatcaaagg aaaaaacgta      7620
     aagaaattta cgacagaaaa gcaaacgact ggcaacctat gtggggagac ctagtcctcg      7680
     tcgaagccaa ccctatggga gttggacaaa aactccaaag ttattggaga ggaccatatg      7740
     aaattgtgga acttccaagt gagcaaacca cagtgataaa gaatggaaac aaattggaaa      7800
     aaaatccaca ataatagact aaaaaaatat tgtgaataaa aatatagtaa tggaaatgtc      7860
     taatacaaaa ttgtgtgata ttcagaggac agaaatgtaa aaatggaaaa gatgcatggt      7920
     tttttttttt tgcaatccca ctctagaacc ccagggaaat attattctgg acgaagtaag      7980
     ggctctgcca ccagtgccac cccgctcatt agtacaagaa atgggagaaa cctatatgga      8040
     tccagcacca gaaaaagaag tagcgataga aaatataaca caaacaatat cgccaatgtc      8100
     aagaaaacct gaaaagaagg agacaatgaa aataacacca ctccgagtaa aatggtaaaa      8160
     tgagaaaaaa cataatatac taaagataaa tttgaaccaa ggaataacag ttgaaccttg      8220
     aaaatgaaaa atgaggggcg tgggacatca accagagaag tgacgtgcct acagctaatt      8280
     ataacaagaa tgcgtccgtc aaactcagtt ttgaacgtac cgaagggctg gaaaaaccag      8340
     aataggaaac tattctgtaa gggtcgttac cctctggaaa agtaagaaat atggaaaata      8400
     taaatgggaa tagaaagagt ataaagagaa tatacatatg aagaggaaat acacccttca      8460
     aagaataaca aagcatcgaa gaggaaaaag acactcttcg caatgaaaat tggaatagca      8520
     ggaataatga cattgataag aagatccaaa agggaaaaga atatgaaact ggttggggtc      8580
     ctgaaataca tactctggat attaatgtaa tagtagagga ttaatatgat ggaaattgaa      8640
     aacacacttt gggacaaacc atttttatac cttgaattta tatgagcaaa cgaggttttc      8700
     attcacagat cctgcctgca acctcaaaag aaaggggggg aggtcaccaa gcgagaaaag      8760
     aacaaacctt acagatggag acggataacg gatcagtaca ggaagaaggt atcctagata      8820
     taagaaaatg aaaaatttta caacttgaga aattttcaaa aaattaataa atcaaaactt      8880
     gaactgcaaa aacaaaacaa actaaaaaca aattgactta aagtcgaaag tttcacgaaa      8940
     ttttaagaaa atgatttatt gtcatacaaa taatgctaga aaaacactat tctttgacat      9000
     atttaaagtt gtatatatta cacgtagaag gtatgaaaga taatgtataa atattttaag      9060
     ctcaagcgaa aacaaaaaca aaaaggaaaa agagaccaac aaaatccaca aaagatatta      9120
     aaatccttta aaactgagca aaacgaaaag atgtgagatt tccaaaaaaa aaaaaacaaa      9180
     aaaaaaacac aacaaataaa taatagaaat aaaaaaaaaa aaaatatata tatatatata      9240
     ttgggactca ccaaactgta gatagtagga tagtagatat gaatagttct accatatagt      9300
     aggaataaaa tacaatagaa taatatagaa taggaaaata ggtcataggc agcagtagtc      9360
     ctttggagtg tacactgtcc caccgaagga gagtgaaagt aatcatcggg agcgccaaag      9420
     aaggaagaca gtggaacaac gaacgtgtaa tggttggcat ctagaattcg tacaaatcaa      9480
     cacccgtcgc gtcttgatcg aataaccatt ctgatgttga ggtagatgat gtaaaaggga      9540
     ggaatgatga cgtaaacata gcacgaaatg gagatgtgac aagctggagc tgaataatag      9600
     atgattatcc aagataacgg ttatccaaga taacgattat ccaaggtaac aaagaaaaaa      9660
     aaaattgaca tattaatgtc ttaagtaaac aattttattt tgaacttggt cagaaaagcc      9720
     aatatgatat aacggacaaa tcgaacatag cttagacaag aaaggccatt ggtgccgacg      9780
     aacaattcga gcacagagga caaattcacc tcagttgttc atgatactac gaatagtcat      9840
     caacatagac aaaaatggga cactaggata tatcaagtca caaaggaaat tagatgccga      9900
     ttaccattga gatcaaagat tcagaaatga agctaggaaa aagacgaaag gagtcgacag      9960
     aaatggatgg tggacacaac agtgggcaca acgaaggatg acccagcggt tagagatata     10020
     ggaacactaa ttctttataa tgtacatagc gaaggaatca gttaacgttg taaatgttag     10080
     aaccaaaaat aggttgagta gggattttac atgtaccaac aataattatt ctagcaagcc     10140
     aaatatgcct tctccgtgtt tttaattcaa aaggatttaa ttaaaaactc gaatggttgg     10200
     ggcgta                                                                10206
//
ID   Gypsy-664_AA-LTR repbase;    DNA;    INV; 864 BP.
XX
AC   .
XX
DT   23-DEC-2018 (Rel. 26.04, Created)
DT   23-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-664_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-864
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-864
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2156-2156 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 864 BP; 226 A; 184 C; 219 G; 235 T; 0 other;
     tgtaccagcc tagcatcatg atacggtact ttctacgtat ccgggaaatg atggttttct        60
     tgcacatagc ctgacgaagc aaagtaacgg gtgcttcctc gttgcagtgg tttgttgcgt       120
     aactgcaaaa ccagaagtca atttggtttt gtttgtttta cctttgccag gaatccgaca       180
     gtgccaaatt taaagtgaca taattttacc gctatggagt aaagcaaaca aacgtgcgcg       240
     agaacttttt acttacgcag ctttccggtt tgcttagccc tataggcggc gggtaatcgt       300
     attgttttgc ttaagttttt catttcagcc acaccacaaa ccgcgaagaa cggtgactca       360
     catgcggatt ttgttacgct catcgctcac ggatcgttag aacaagacga caagttctac       420
     caattaagag agtgagttcc tcgccaggga gtggaatcaa ccctttaaaa ccgacccgcc       480
     aagatggaag gggcctcggt gtgaagaaaa tgtacgacgt ccgcagttct gacggttcgt       540
     tacaggagga gtccgggtgt gtacgacgcc ccagttctga cggttcgtta caggaggagt       600
     ccgcgacaga tctgggtggc gattccgtgg cgtttggatt aaacctactt ctctgatttt       660
     tgcgaagagg gacgacaatc ttccgttcaa agttcagtgg acattttcct gccaaattgc       720
     cgagcaggtc attccgggtc gagagtgttt gatagtgata taaggtggga tgaacgatag       780
     aataagggcg gaaagctagt gaattgtgac gacttttagt gtgaacatca ataaaacttt       840
     cctcattaaa accggtacgc taca                                              864
//
ID   Gypsy-665_AA-I repbase;    DNA;    INV; 5736 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-665_;
KW   Gypsy-665_AA-I; Gypsy-665_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5736
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5736
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2038-2038 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 5736 BP; 2106 A; 1077 C; 1005 G; 1548 T; 0 other;
     tggcagaccg tgacagtgtg aacagaacca agacacagtg aatcaagcct aaaagtatca        60
     aagtgaagga agatttctaa gtgttcaaaa acaaaaagac ttggtggaat tgcaaagttg       120
     tcacgatggg atggtttaac gcggataatc atatcgtgaa ccagattgat ctcgctacta       180
     tagaaatgag gatagccgtc ggcgctatcg taaccgtagt gatattgatg attgtgtacc       240
     tcgtactccg agtgtacaac aaataccaga agaagggcat gcaaaacaca atacgtcgcg       300
     aaatccaact gaacaatgtg cgaagcgata aagtgtaaaa caacaaaaaa aaacaaaaac       360
     aacagtaaaa cattttgtgt gaccgtgaat ttaaatcagc gtggaaccaa ggtgcgataa       420
     acatttaatt tcgacaacaa acgagcttga accaaggtgc gacacacagt aaaatgagac       480
     gaagcataat ttcgtcaata atcgaacatg aaccaaggtg tgaacgagac gaaaagtaat       540
     tgcagcagtg attgaacgag aaccagggcg caataaacga gacgaaacgc aatttcggga       600
     acagatgaac caaccaacca acgggcaaca gcagcaatcg agagcagcaa tatgtgggat       660
     acgaatcgca taccgcgaga ggtctcaaaa acagataagt acaaaaagtt agttaactaa       720
     gtgatgactt tcgataaatt agtgaacaat cttgatcagt taacacgaat agaacagaat       780
     cttaggaaat ctattaataa aagtataaca gtagatacat tacagacaaa tttagaaaaa       840
     gctttttggt tgtttaatga gatagaaacc gaattaatag aaaaccaaga taaaatccct       900
     gataagcaat tttttattta tatcaaaaaa gcaagaactt ccattgacta tattaaacaa       960
     gtaacacata gcaaaatagt aattcaaccg aaaccaatta taaacccaat ttccgaaatc      1020
     atgcctttcg acgcgagact tgcctcgtca atcttattgc cattcgacgg tgattgtgag      1080
     aagctgtctg ctttcaaaga cagtgtaaat tttttaaaaa caactcaagc tgccgacctc      1140
     ccaacgttaa agttattcat atctacgaga atatctggaa aagcgcgaga tgcattgccg      1200
     aacgatatta ctggaaaatc aattgaagaa attgttgact taattagcca gcactgtgaa      1260
     agcaaggtaa cttcagacca agtgctcgct aaactgaaag gtgttaaaaa gggttctcca      1320
     aaacaacaat tttgcgaaca aattgaatca ctttgcaatc agttgactag aacatatgtc      1380
     aaagagggca tcccacaggc gaccgcaaag aaaatagcca caaaatcagg tatcgaggcg      1440
     ctggtaaaaa ctgttccaac tgaaaatgcg aaaattgtac tccaagctgg ctcattctca      1500
     agtattgagc aagccattca gaaatttaat gaattacccg ataactccga gaacaatgaa      1560
     cttaaccgta tcttcagcgt aaacgcgaac caaacaagat atcaaaatag aaatcaacat      1620
     agaggtaatg gaagatacgc cccacgcgat gcgggaaata gcaattttta cccccgtgga      1680
     acaccgtctt acaatcagcg gtttaacttt aacaataccc caccgcgttt ccaaaggcaa      1740
     ttcttcccta acggtaatta tcgtggaggg cgaccaaaca gccgtggtca cccacaccag      1800
     ggacagcgcg ttaacagaat ttatttcgct gactcacaaa cagccgcgtc aacaccgagc      1860
     atgcataata acttcactcc gtacatgcaa aaccctaacc aaccgcactg gaatatgacc      1920
     cctcaggtac atcaacctac gacagctacg ccaccacaaa acgaaatttt tttaggaacg      1980
     gtggatcaat tttctcaatt aatgtagcag cttcaaactt tgtcaacctt tcgataagca      2040
     ctttcgataa accctgttcg tttttagtag actctggagc agatgtttca ttgctaaaac      2100
     aaaaatttct aaagcaatcg acctcggtga acccaagaaa aagttgtata ttacgtggga      2160
     taacaccagg agaactaaag agtattggaa cggtcaactg ctcagtctta atccaaaata      2220
     tagctttcaa tactaccttt cacttgactg atgatgactt cccgatacca acggatggta      2280
     ttctgggaag agatttttta acggcatata gatgtgaaat taattatgac acgtggattt      2340
     tatctgcgta tgtaaataat attagaattg aaatacctat tcataatgat ctcaatggat      2400
     acacgtggat cccagcacga tcagaagttt ttagaatcat tagtaatcta ggtacgaacg      2460
     aagacgtcgt agtaaactca gctgagatag caccaggagt tttctgcgct aacgcaattg      2520
     taaatagtaa agcaccattt gtaaaaatta taaatactaa tgattatcct atacaaatta      2580
     ataagcctca atttaagttt tcattgctta acgatttctt catagctaat gttaataaaa      2640
     atcctaacgc ggacagactc gagaaactga gcgctgaatt aaacttagaa aatataccaa      2700
     cgtttgctgt aagttccata agacaattat gcaatgaata taacgacatc tttagcctga      2760
     aagatgacct tttatcgtat aataattttt accgacaaaa aattaattta acggataaaa      2820
     caccggtgta cataaaaaat tatcgtaatg cacagtgtca tagagaagaa atctgtcgtc      2880
     aagttgacga tttaattgct aacgacatca ttgaaccttc catatcaaat tacaactctc      2940
     cgctattact tgtacccaag aagtcgacta cgtctgaaaa gaaatggaga ttggtcgttg      3000
     acttccggca gttgaataaa aagctgctgg ctgataaatt tcctcttcca aggatcgatg      3060
     acatactcga ccaacttggt agggccaagt atttttcgac tctagatctc atgtcaggtt      3120
     tccaccagat tgagatcgag aaaaactcta gggaattcac tgcgttctct ctgcaggaac      3180
     gtggtcattt tcagtataaa agattaccgt ttgggcttaa cataagtcca aacagcttcc      3240
     aacgaatgat gtctattgca ctcagtggct tgagtcccga gtgtgcattt ttatatattg      3300
     acgacgttat cgtcgtaggc tgttccgttg aacaccactt gaaaaattta agaaaagttt      3360
     ttgaatgttt aaggcaaaga aacctcaaac tcaatccttc gaagtgtaat tttttcaaat      3420
     ccgaagtgac atttctaggt cacaacatta cagacaaagg tattttacca gacagttcca      3480
     aatatgatgc tataaaaaat tatcctacac cacagaacgc tgaccaagtc agaagttttg      3540
     tggctatgtg taattattat agacgattta tcccgagttt tgcagcaatt tgccactgct      3600
     tgaacaaatt attacgtaaa gaagctattt tcgattggac agaagaatgt caacaatctt      3660
     ttgaaaaatt gaagaatatg ctaatttcac ctaggatact acaatatcct gattttaata      3720
     aaaccttcat attgacaact gatgcatccg actttgcgtg cggcgctgtt ttatcgcaaa      3780
     aatttggaaa cgatgatctg cctgtttgct tcgctagtcg cgcgtttaca aaaggtgaag      3840
     caaataaaca catcatcgag aaggaattag ccgccatcca ttgggctatc atgcattata      3900
     ctccatattt actaggtagg aaatttattg ttcgtaccga tcatcgtccg ttgatttacc      3960
     ttttcgggat gaagaaacct tcttcaaagt taactcggat gagaatagat ctcgaagact      4020
     ttgactttga aattgagttt gtcccaggta aaagcaacgt cgtggccgac gctttatcta      4080
     gaattaatat tacttcgaat gaattaaagt ctatgagtat tttacaagtg cagactaggt      4140
     caatgctacg caaacccagc ctcgccaata atgataacaa taaagatagg caaagcagat      4200
     taccggaact tgatcaactc catgtgtatg aagctattaa tagtgaacaa atatataaac      4260
     ttaggaaatt acaattttcg cttcattcaa atagaaacga accaacaatg gcaattaata      4320
     ttcttgaaaa aaattataaa aagagcctaa ctctagcgtt agacctcaac atcactaagc      4380
     aaaacttgcc aaatatattc catttaattg aaaagggtac cctacaattc ataaaacaag      4440
     ataaaattga aaataagaac atagctattt cgactagcga tgtcattttt agttatataa      4500
     gtattgatga ttttaaagct ataggaaatc atatacttaa agaaatttcg ataattattt      4560
     ttaaatcccc caaaatagtc accgatcaaa atgaaattca atccatttta gaacatcacc      4620
     ataatacatt aattggagga catgttggaa ttaaccgttt atacaaaaaa cttaaaaatt      4680
     tatataattt tccaaatatg aaatacattg tcactaaatt tgtcaaatca tgtgaaagtt      4740
     gcaaaaagaa taaacatttt tcgggagtac aagagagcat ggtgaaaaca acaactccaa      4800
     ctaaagtatt tgacatagtt gcaatagata ccattggacc tttcactatt agcgataaag      4860
     gaaacagata cgcagtaaca attcaatgcg atctgagtaa atatataatt gctattccta      4920
     tccctgacaa aacagccgat acaattgcca gagctgtagt agagggatgt attttaatat      4980
     atggaccgat gaaggcaatc agaactgacc aaggcacgga atataaaggc gttttcgatt      5040
     cagtttgcaa attactaaat attgatcata ccttagcaac agcttaccat ccacaaactt      5100
     taggagcgtt ggaaaggaat cacagatgtc tcaatgaata tctgcggttc tttgtcaaca      5160
     atctgaaaaa taattgggat aactggttaa cctattactg ttttagctat aacactacac      5220
     caaatacaaa ccacaattat acgccctttg aaatagtttt tggaaagtca gtaaatcaat      5280
     tcgatcagat aaatgtaaat caaatagatc cggtatataa ctatgaaaca tacgtaaatg      5340
     agcttaaatt caaattgcag aatatacatc accatatttt caaacaaata gaaaatgtta      5400
     aacaaattag aacgaataat gccaataaac taataaatca aacatcactc agcgtaggag      5460
     ataaagttta tctaaaatta gaagctagaa ggaaattaga ttctgttcaa gagggaccat      5520
     acattgtaat agagctggat aacgccaatg ctatcattaa acacgaaatt tcaacaaaca      5580
     tattaaaagt tcataaatcc aggcttatta aacatacaga cttgtaataa aaatatcaaa      5640
     taatgtgaaa cgacgaagtg agtttattcc caaaatttat tttcttttct ttttcatttt      5700
     ccgaatggtt acaccattct tcgctaagag gggagg                                5736
//
ID   Gypsy-665_AA-LTR repbase;    DNA;    INV; 386 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-665_;
KW   Gypsy-665_AA-I; Gypsy-665_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-386
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-386
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2081-2081 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 386 BP; 116 A; 97 C; 52 G; 121 T; 0 other;
     tgtagtagca ttactacatt tctcataatt cagtactgta cccatgaccc acatatggta        60
     aacattttca ttaaagatat cctattttaa ttgctttcct aaatttacga cgacctcaca       120
     gtcagtacca aaatatgcat aaacaactgc gacctcccag tcagcagtta aactctcctc       180
     aattccttgt tttgaaacct tcgtaactgt tgccacatgt gcggtacatg gtcatgcaat       240
     gttttacaaa cgcactcact tcgctcgtgc agcataccca tagaactttc tccttttact       300
     ttcatttcaa taaacttcat tcaagattct gagttcagag tgtcaagtca catgactaca       360
     actatccgaa gtccgaagat gccaaa                                            386
//
ID   Gypsy-666_AA-I repbase;    DNA;    INV; 6872 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-666_;
KW   Gypsy-666_AA-I; Gypsy-666_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6872
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6872
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2152-2152 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           431..1738
FT                 /product="Gypsy-666_AA-I_1p"
FT                 /translation="MPRETRQSNNDVSVSELQAQIEQMQTIIDLQIQRADA
FT                 AAAQIAALQTSSAETPTRAVPALTAVNNQSNTRFDASKVPDAIKMIVPYSG
FT                 DCKTLSHWISSVESKLCFAKNLCPTPIDEANAMPLWNSIIRDKILDKANDV
FT                 LVQNHTPSVWADIKKTLENNFGDKRDLGTLVTKISYLRQKSKTIDEFHNEC
FT                 SELLADISSKIALDQSLQPCAKALISNYECMIRNAFVDGLIDPYSTLTRAS
FT                 RPSTLTEAHQYAIEQLNAYQRKKERNEQMPQQKPPHFQQPFHKATSQGYTQ
FT                 KHAQGATPKQPHQGYPHIGNRFGPQYGNRFASQNGNHPVPQRNQMNQYGNR
FT                 YASQNNNNFIPQQNQIKQEQRSNQTRHGVNYHENTQIPQNESQYDPQYNPQ
FT                 SETVAQSEYPESENVQDQGETEQETEYENLNFHILEGLNQTE"
FT   CDS           1696..4956
FT                 /product="Gypsy-666_AA-I_2p"
FT                 /translation="KSKFSYIRGSQPNGMINNCLPFMEMKTPKFGTLRLLI
FT                 DTGANKNYISPALVPSQITRSCPTQLIKNINGTHSVNQYTLFNPFAEFCKT
FT                 VPYQKFYLFNFHSYFHGLIGYESLKSLGAVIDTARDILKIGSWSIPLHKKY
FT                 PEIININANETKAIFLPTSTSDGDFLLGKEVELLPNIHILAGVYSSKNHKA
FT                 EILIHNFNDDTKEFSLGDTLNIEVNNFETTSPQVKETASKQNVQATRFCTD
FT                 KIRHNNLNAEEKSNLFRLLNKFEDIFFNEDEKLTFTNAIHHRINTQDELPV
FT                 YSKTYRYPFCHREEVQRQVDRMLAQGIIQHSDSSYNSPIWVVPKKLDASGK
FT                 QKWRLVIDYRKLNSKTVDDKYPIPNITDILDKLGKCQYFSTLDLASGFHQI
FT                 QIDRKDIRKTAFSVDGGHYEFIRMPFGLKNAPATFQRVMDNILRKHIGVRC
FT                 LVYMDDIIIFSTSLQEHLENLKIILETLREHNMKIQIDKCEFLQKEVAFLG
FT                 HVVTPEGVRPNPEKIRVIQEWPLPNNEKELKGFLGMIGYYRKFIRDFAKIA
FT                 KPLTQQLRKGETIQHTPDFVSAFNRCRKLLTSSHVLQYPDFSKPFVLTTDA
FT                 SNYALGAVLSQGPIGKDKPIAFASRTLTRTEENYSAIEKELLAIDWACKYF
FT                 KPYLFGRKFTLYTDHKPLTYALNLKTSNDRLVKMXLRLEQFNYEIKYRPGK
FT                 QNVVADSLSRIKPEINANEQESLSSYSDGNESDDNSDNDDNDDNDDSDSGT
FT                 VHSSSSDANDLIKMTLRPINVFKNQVLITEGPRNDELYEEIFPSIFRRTIT
FT                 RATFGMVNAVAIFRDYMHPTRMNCILCPEKWLKWIQLAYRNHFSRNKSFKV
FT                 ILTQSILQDIVSEEGQDQIIEETHDRAHRGIEDNCKVISQKYFFPKMRNKV
FT                 TSFVNLCNVCLENKYDRNPYKVKFAYTPLPSKPLDILHVDIFISTPDLFIS
FT                 AVDKLSRFAILIPVKSRSIIDIKRGLTKLLTTYRTPRMIVCDNEVAFKSIE
FT                 VRSLLQRLDIETYFTPSDRSEVNGIVERFHSTLSEIFRCIRGKFPDLSNKE
FT                 IYKIATTLYNSTIHSSTKLKPVEVFFWNER"
FT   CDS           5377..6870
FT                 /product="Gypsy-666_AA-I_3p"
FT                 /note="env."
FT                 /translation="HTNPNLQILPIPFILCTLFSSTFCEPLLKIINTSNDP
FT                 IAQIKVTDCKIQTGSIKIVHPINLDSIEESIELITNTFYNKLTRNNQLHEV
FT                 IKFRVKRLYSTLYGLKPQQIQRHRRWDSIGTAWKWIAGSPDAQDLHIINST
FT                 MNEIIDQNNQQYKVNESINKRISLLTGTINQMANAINNNKASLEILDAITI
FT                 MLSVDVINELLDNIQEAVTLSKISVTNNKMLSTREVNVIKSTLQEQGIEVN
FT                 FPDEALQFVTPKIAVKKGDLLYILHVPHLENTTSTVIRIFPLIVDNQIIES
FT                 YPSHIIRHGNRLFTTDTPGDFVQKSSNIKEFEDNCIQNIMLGKRSQCNSIA
FT                 KNGTTQQLANENTIIISNAKNHTLKTNCGPEDRTITGNYIIIFRDCTIHFN
FT                 NQSFTSSELTVETEVIHGAFHNSFIEWNLTHQHDIAAISETAVNNRQQLNH
FT                 VYLLQDRLHLKLWTMFGGLSFSTILSLAILGIFIKIFYNSRTNGTGRSSLR
FT                 GD"
XX
SQ   Sequence 6872 BP; 2412 A; 1518 C; 1232 G; 1708 T; 2 other;
     ggcttgagtc ggtaggatac ggtagtgccg cgtgtgaaaa agtgtaacta gtgaattcgc        60
     ccgctaactt agtgcaagag agaaaatctt cgtgcgaagg aagcatcttt gaaggaacat       120
     caaggacctg cgacgaattc ctgtacaccg gatcatcgga cggtagcccg gaaccccgct       180
     acccaacagt tttatcatct catcaaccac tggcggaata ccaaggattt ttgaggtgag       240
     tcaaaacttt atttcttatt ctgtattttt aaaaaaaggc gcagtcgaat aattagtgga       300
     taattaattt aaaattggtg aaaagtgaaa tagagtgagt ttttagtgat tgacaaaaga       360
     aaaggcacag tcgataaatt cagtaaataa tcaatttgaa ataagaaacc gtgactaaac       420
     gattagaaaa atgccacgcg aaacgagaca aagcaataac gatgtctcag tgtcagaact       480
     gcaagctcag attgagcaga tgcagaccat cattgatttg caaatccaga gagcggatgc       540
     agccgccgct cagattgctg cactccaaac gtcgtcagca gagacgccca ctagagctgt       600
     ccctgctctt actgcagtaa acaatcaaag caacactcgc tttgatgcgt ccaaagttcc       660
     cgatgcgata aaaatgatcg ttccttacag tggcgactgt aagaccctct cccattggat       720
     aagttccgta gaaagcaaat tatgcttcgc aaaaaatttg tgcccgacac ctattgatga       780
     ggcaaatgct atgcccttat ggaatagcat tatcagggat aaaatccttg ataaagccaa       840
     tgatgtgttg gtgcagaacc acacaccatc cgtctgggcg gacattaaaa aaacgcttga       900
     aaataatttt ggagataaac gagatttggg tactttagtt accaaaatct catacctccg       960
     tcaaaaatcg aagacaattg atgaatttca caatgaatgt agcgaattac tcgctgacat      1020
     ctcgtcaaaa attgcgctag atcaaagttt gcaaccgtgt gcgaaggcgc taatatctaa      1080
     ttacgaatgc atgattcgta atgcatttgt agacgggtta attgacccgt attcaacgct      1140
     cacaagagca tcacgcccca gcacgttaac cgaagcacac caatacgcta tagagcaact      1200
     taatgcttat cagcgaaaaa aggagagaaa tgaacagatg ccacagcaaa aaccaccgca      1260
     tttccaacaa cctttccata aagcaacgtc acagggatac acacaaaagc atgcgcaagg      1320
     agccactcca aaacaacccc atcagggtta ccctcatatc ggtaatcgat ttggtccaca      1380
     atatggtaat cgttttgctt cccaaaatgg taaccatccc gtcccacaac ggaatcaaat      1440
     gaaccagtac ggtaatcgtt atgcttccca aaacaataac aatttcattc cacaacaaaa      1500
     tcaaatcaaa caggaacagc ggtctaatca aacaagacat ggtgttaatt atcatgaaaa      1560
     cacacaaatt ccccaaaacg aatcacagta tgatcctcaa tacaatccac aatccgaaac      1620
     agttgctcaa tcagaatacc cagaatcaga aaatgtacag gatcagggag aaacagaaca      1680
     agaaacagag tatgaaaatc taaattttca tatattagag ggtctcaacc aaacggaatg      1740
     ataaataatt gtttaccatt catggagatg aaaaccccta aatttggcac acttcggctt      1800
     cttattgaca cgggagccaa caaaaattat atctccccag ctctcgttcc ctctcaaata      1860
     accagatctt gccctaccca attaatcaaa aatataaatg gtacgcatag tgttaatcaa      1920
     tacaccttat tcaatccttt cgcagagttc tgtaaaacag tcccttatca aaaattttat      1980
     ctcttcaact ttcatagtta tttccacgga ctgatagggt acgaatcctt aaaatcatta      2040
     ggagctgtca tagacacagc acgagatatt ttaaaaatcg gttcttggtc gattccactt      2100
     cataaaaaat atcctgaaat aattaacata aatgcaaatg agaccaaggc tatcttcttg      2160
     ccgacatcca cttcggatgg tgactttctc ctgggaaaag aggtcgaatt gcttcccaat      2220
     attcatattt tggctggagt ttattctagc aagaatcaca aagctgaaat cttgattcat      2280
     aatttcaacg acgacaccaa agagtttagc cttggcgata ctctcaatat agaggtaaat      2340
     aacttcgaaa caacctctcc acaagttaaa gaaaccgctt caaaacaaaa tgtccaggcg      2400
     accagatttt gtaccgataa aatacggcac aataatttga acgctgaaga gaaatccaac      2460
     ctcttcagac tcttgaataa atttgaagat atcttcttca atgaagatga aaagctgact      2520
     tttaccaatg cgattcatca ccgtataaat actcaggatg aacttcctgt ttattctaaa      2580
     acctaccgct accccttctg tcatagggaa gaggttcagc gacaggtgga tagaatgtta      2640
     gctcaaggaa ttatccaaca ttcggatagt tcctacaact cacctatttg ggtcgtgcca      2700
     aagaagcttg atgcttctgg caaacaaaaa tggagattgg ttatcgatta ccgcaagcta      2760
     aacagcaaaa cggttgacga taaataccca atccctaaca tcactgacat tttagacaaa      2820
     cttggcaaat gtcagtattt ttccactctg gatttggcct ccgggtttca ccagatccag      2880
     attgatcgga aggacatccg gaaaacagct tttagtgtcg atggtggaca ctacgagttc      2940
     atccgaatgc ccttcggatt gaagaacgct cctgcaacgt tccagagggt gatggacaac      3000
     atcctcagga aacacatcgg cgttcgctgt ctagtgtaca tggatgatat aatcatcttt      3060
     tccactagcc tacaggaaca cttagagaat ttgaaaatca tattggaaac tcttagggaa      3120
     cacaatatga aaattcaaat tgataaatgt gaatttttac agaaggaagt tgccttcttg      3180
     ggacatgtcg taactcccga aggagtcaga cccaatcccg aaaaaataag agtaattcaa      3240
     gaatggcctc tgccaaataa cgaaaaggaa ctgaaggggt tcctcggcat gataggctat      3300
     tacagaaaat tcatacgaga tttcgcaaaa atcgcgaaac ctctaaccca acaattgcga      3360
     aaaggagaaa caatccagca tactcctgat tttgtatctg cctttaatcg ctgtaggaaa      3420
     ttgttgacca gtagccacgt gctacaatat cccgatttct cgaagccatt tgtgttgacc      3480
     acagatgctt cgaattacgc attaggcgcg gtactgtctc aaggccccat cgggaaggac      3540
     aaaccaatag cctttgcttc acgcacccta acccgtaccg aagagaacta ctctgccata      3600
     gagaaagaac tcttagctat agattgggcg tgcaaatatt ttaaacccta cttgttcggt      3660
     cgtaaattta ccctttacac cgatcacaaa cctcttactt acgccttaaa tttgaaaaca      3720
     tcaaatgata ggcttgtcaa aatgamattg aggctggaac aattcaatta cgaaataaaa      3780
     tatcggcctg gcaaacaaaa cgttgtcgcc gacagtttat ctcgaattaa accggaaata      3840
     aatgctaacg agcaagaatc cttatcatca tacagtgatg gaaacgaatc tgatgacaat      3900
     agcgacaatg atgacaatga tgacaatgat gacagcgata gtgggactgt ccactccagc      3960
     tcatctgatg caaatgattt gattaaaatg accttacgac caattaatgt tttcaaaaac      4020
     caagttttaa ttacagaagg gccaaggaac gatgaattgt atgaggaaat tttcccctct      4080
     atattcagac ggaccatcac cagagcaacg tttggaatgg tgaacgctgt agccatcttc      4140
     cgagactaca tgcatccgac ccgaatgaat tgtatcctat gcccggagaa atggctaaaa      4200
     tggattcaat tagcttatcg gaatcatttt tctcgtaata aatccttcaa agttatactc      4260
     acccagtcta ttttgcagga tatcgtttcc gaagagggac aagaccaaat catcgaagaa      4320
     acacacgacc gtgcccatcg cggaatcgaa gacaactgta aagtgatttc ccaaaagtat      4380
     ttcttcccga agatgcgsaa caaggtaaca agttttgtca atctttgtaa cgtatgtttg      4440
     gagaacaaat acgatagaaa cccctacaag gttaaattcg cctatactcc ccttccctcg      4500
     aaacctttag atatccttca tgtggatata tttatatcta cccctgacct cttcatatcc      4560
     gcggtagata agctatcgcg atttgcaata ctaatcccag ttaaatccag atctatcatt      4620
     gatatcaaga gggggctaac aaaattactc actacctata gaactccaag aatgattgtc      4680
     tgtgacaatg aagttgcatt caaatcgata gaagtacgta gtctccttca gagactggat      4740
     atcgaaacct attttacacc atcagatcgc agtgaagtga atgggatcgt tgaacgattt      4800
     cattccactt tgagtgagat ctttaggtgc attagaggta aatttccgga cctctctaat      4860
     aaagagatat acaaaattgc aactacattg tacaattcca caattcattc ttcaacaaaa      4920
     ttgaaacctg ttgaagtatt tttttggaat gagagatgaa gacgaaaggc cacttgatct      4980
     ccaaaaaata ctagaagaca gaaacgaaat ttttgatgaa gtcattcatg aactagaatc      5040
     ccgtcagaaa aaactaatcg attcccacaa cagattaaga gaaaatgacc caaatttcga      5100
     accaaatgat gatatatacg ttaaaacttc aggcatcccc aacaaaaaga aacaaaaatt      5160
     taaaaaacaa acagttagga caaacagaag gaaaacagtt atcgatcgta ggaatattag      5220
     attacacaag atcaatttga aaaggaaaag aaagctgtaa aacactatag aacctgaaaa      5280
     ggattttcag cacttaaagg gggagaggag cctaccatct caaaactact cctaaaattt      5340
     tctaaactta ctttataaat taataacaca tactaacaca ctaaccctaa tttacagata      5400
     ctcccaattc cattcatatt atgcacccta ttttcgtcga cattctgtga gccattgtta      5460
     aaaatcatca acacctcgaa tgatcccata gcccaaatca aagttaccga ttgcaaaatc      5520
     caaacgggat caataaaaat tgtacaccca ataaacctag atagcattga ggagagcata      5580
     gagctaataa ctaacacctt ttataataaa ctaacccgaa ataatcagtt acacgaagta      5640
     ataaagttta gggtcaaaag actgtactcg actctgtatg gactgaagcc acagcagatt      5700
     cagcgacacc ggcggtggga ctcaataggc accgcatgga aatggatcgc cggatcaccc      5760
     gacgcccaag acttgcacat cataaattct accatgaacg agataatcga ccagaataat      5820
     caacaataca aagtaaacga aagcatcaac aaacggattt cactactaac cggaacaatt      5880
     aaccagatgg ccaatgcgat caacaacaac aaggcgagct tggaaatttt ggatgctatc      5940
     acaatcatgc tgagtgtaga tgtcatcaat gaactcctgg acaatattca agaagcagtc      6000
     accctctcga aaatttccgt caccaacaac aaaatgttat caacacgtga ggtaaacgtc      6060
     atcaaatcca cccttcaaga acaaggaatt gaagtcaact ttccagacga agcactacaa      6120
     ttcgtcaccc ccaaaatcgc agtgaagaag ggagacctgc tttacatact gcatgtcccc      6180
     cacctggaaa acaccacatc aaccgtcatt agaatctttc cactcatcgt agataaccag      6240
     atcatcgagt catatccaag ccacattata cggcatggga ataggctatt tacaacagat      6300
     acccccggag attttgtaca aaaatcatca aacatcaagg aatttgaaga caattgtatt      6360
     cagaacatca tgttgggaaa acgatcccaa tgtaattcta tcgcaaaaaa cggtacaacg      6420
     caacagcttg ctaacgagaa cacaataatt atctcgaatg caaaaaacca cacgttaaaa      6480
     acaaattgcg gacccgaaga tagaaccata accgggaatt acatcatcat tttccgagac      6540
     tgtactattc acttcaataa ccagtctttt accagctcag aattaacagt tgagacggaa      6600
     gtcatccacg gcgcatttca taacagtttc atcgaatgga atttaaccca ccaacatgat      6660
     atcgcagcaa tcagcgaaac agcagttaac aacaggcagc aactaaacca cgtttacctg      6720
     cttcaggata gactccactt gaagctttgg acaatgtttg gaggattatc attttcaacc      6780
     atactcagct tggcgatact tggcattttc ataaaaattt tctacaacag cagaactaac      6840
     ggaacgggac gttcctcact taggggcgat ct                                    6872
//
ID   Gypsy-666_AA-LTR repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-666_;
KW   Gypsy-666_AA-I; Gypsy-666_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-408
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2082-2082 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 408 BP; 143 A; 107 C; 73 G; 85 T; 0 other;
     agttacagac gtaaccaatc agcaaaacct cgaaggtgat agtctagcag acatttcaac        60
     caaactccaa cgactccaac aacaattgca acagttgcca gattcctcaa ccgcagcagc       120
     accattaccc aacaccttaa ccccatagtc agcaagtcca acgtccatca accaacaccc       180
     gacgatcaac cgaccaacag gtgccgagct acacagcagt tcaacggaaa acagttcata       240
     tttcagacta gtaagcataa gtcaggaaag agctagggaa ttgcaattaa gcgaggcctc       300
     tgtacatggt aggaataaag gcagaaatca ttcttagttg agtagtcaac ccgtgtagtc       360
     gattttatat tttttaaaaa acttcctccg aaggccaatg acgtaact                    408
//
ID   Gypsy-667_AA-I repbase;    DNA;    INV; 6609 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-667_;
KW   Gypsy-667_AA-I; Gypsy-667_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6609
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6609
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2153-2153 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           240..1505
FT                 /product="Gypsy-667_AA-I_1p"
FT                 /translation="MPQTSEEVLAHQEQMMANAEKIVKTLQTPQGINILQP
FT                 FDGNPVKLHSFLRSVDNIMPFIDALEATPYHNVWVQAIRNKIIGDADTVLE
FT                 VYGTPLDWKIIKANLISHYNDKRDATTLTRELFLAHQTSSIEDFYGRVQHL
FT                 LSLLVNHANIAIDDPTVRTDRIKTHSENALQVFLAGLKEPIGGNIRARRPE
FT                 TLKSAFDACIEEQNFLNKSGFTNNMPPKHTRNPFLPPEKPNHGIPRTFNGN
FT                 PLPLPPRQQNYYAPNPFRNHTFFRPHPPQEQKPVPMEVDKSIRSANINYAN
FT                 RPPTRFPPFRHQQPFRPFGNPPMGPRQPFPPMPPRPFGNPTFPHQPFRQTQ
FT                 APKFIVEELTNLEHDYSYHPYFPEDYYYGYNGYDYSDDYPEYXESQEVQPN
FT                 TSKAICQNEENSTDEINFSRDSENPQGT"
FT   CDS           1448..4951
FT                 /product="Gypsy-667_AA-I_2p"
FT                 /translation="RELDRRNKFFEGFRKPTRHIEPHNFIPYVEVTTIFGK
FT                 LKLLIDTGANKNYLNPQLIKDKTITIHETPSVVKNVSGMHKINQSIYFAPF
FT                 KDKPPIKFFLFKFHSFLDGLIGYESLTHLQANIITSSNLLQFPDETISMRR
FT                 LYPESFSIKINAHEQTVIELPTTAGDGDFLVENNFPLTEDVIVIPGLYKAK
FT                 DNKANIIALNTSSSPVQINPNRPLFAEVNNFEQKSQILSENGNNKHKLKKN
FT                 LRLEHLNEEERTKLLKIIEKYGSIFHQEKQPLSFTNAIKHNIKTKDENPVY
FT                 SKSYRYPFCHKEEVQRQILDMLEQGIIRHSNSPWSSPVWVVPKKLDASGKQ
FT                 KWRLVIDYRKLNDKTVEDRYPIPNISDILDKLGRCMYFSTLDLASGFHQIE
FT                 VNSQDIPKTAFSVEHGHYEFVRMPFGLRNAPSTFQRVMDNILREHIGVRCL
FT                 VYMDDIIVFSTSLQEHIENLAKIFECLHRYNMKVQLDKCEFLKKEVGFLGH
FT                 IITPEGVKPNPAKIEAVRNWPLPKTEKELRGFLGVIGYYRKFIKDFARIAK
FT                 PLTNCFRKGESIHHTKEFIEAFHKFKNILTSSSILQYPDFTQQFIVTTDAS
FT                 NHAVGAVLSQGIVGSDKPVAYASRTLTKSEEKLPAIEKELLAIHWGCKYFR
FT                 PYIFGRKFVLYTDHKPLTYGLHLKNPNDKVLKWMVDLREFDFEVKYKPGKQ
FT                 NVVADGLSRIPHEINVNEGGSETDSDDSSSDISVHSANTDDSEYIPMTLKP
FT                 INYFSNQIILKIGEFDDDQIEEVFPKVFRRTITRMHFGMGLITRIFKDYCN
FT                 PSKINCLYCPEELIMSLQTVYKNHFGHNKSLKVTFSQKMLQDLKLPEDQNL
FT                 IIRKTHESSHRGIWENHKQISRKYFFPRMKVKIRQFVKLCAICNKNKYERK
FT                 PYKIKLGETPIPKRPLEIIHLDIFIAQPDMFLSIVDKLSRFGIIIPIKSRT
FT                 IQDIRKAILKFFSTHGKPELIVSDNEPAIKSIEVRGLMEDLGVQMYFTPAN
FT                 HSETNGIVERFHSTLAEIFRCIKGRHEDLSQKEKFLIACTQYNETIHSATK
FT                 LKPREIFFGIKDQDVRPLDINEIIEKRNKLYEEVTLELSKTQKANLDQRNK
FT                 HLENAPKLQENDQIYHKVQGIKNKTNEKYSEVHVKNDNTKTFIDDMNRRLH
FT                 KMKIRRILD"
FT   CDS           4955..6607
FT                 /product="Gypsy-667_AA-I_3p"
FT                 /note="env."
FT                 /translation="YISLFQEAMGSTTLVMIGILCVASTQTHTIYIQDLST
FT                 NPGLLTITSGRCFIIKGQDRLYHEIDLDQYQKLLNNVDTIIQGLRHFDAFH
FT                 DLTVLLSNKYNSILKLFNNLLPHSRNKRGAFNLLGSSIKLITGNLDDNDLL
FT                 QINHEISNLKVKSNSLIEQNNLQIRINKKIENQVNKLTKTFNDQQTLITRE
FT                 LIKIKQGLNNRTGINNISFLIQTFKTTYQLDQIEKELESIFETTHLANLNV
FT                 ISRNILDRSELYLIREKLERFNVTFQNLDQTYELLGIRSVFKDQKLYFIIF
FT                 IPQLESTNFNRILMEPIPVDRRIITLPFATALVGNNKTFLVKEECHSIGPN
FT                 TMCSMDKLLDISKDRCFSKLLRGLPGNCSFTKYNRDNGNIKRLTENYIVIK
FT                 NVPQVKMTNTCNLSNRTLQGTFLIYFANCSVTLDNVTYSNTVYYTKPQQTI
FT                 IPLDGVKIDQHILEPNITMEMLQELHLHNRKQISSLELKNITHTYTSVGFA
FT                 ILSIISVIATTVLIYINIPKRAIGSSSQLYPTPRNINARKEYTFTNSGRIG
FT                 LEGG"
XX
SQ   Sequence 6609 BP; 2454 A; 1367 C; 1117 G; 1670 T; 1 other;
     ggcgcagtcg tgcggatcgt tttttttagt agtgaataaa aagagttaac agtgcggaga        60
     tctcaccgga ggattaccga ggaggaccct gcaaggacac cgaaacgaat agaggatccc       120
     cgaaaggaca tcgggaataa atcgtgagta aaaaccatat agattaagaa aagtgattta       180
     aagtgcaagt gattaagtga ataagtagtg atagttcaaa caaatttaac aattttacaa       240
     tgccacaaac cagcgaagaa gtgctcgccc atcaggagca aatgatggct aatgccgaga       300
     aaatcgtgaa aacgttacaa acccctcaag ggattaacat tctacagcca tttgacggca       360
     atcccgttaa actacactcg ttcttacgca gtgtagacaa cattatgcct tttatcgatg       420
     cattggaagc cacaccatat cataatgtgt gggtccaagc gataagaaat aaaattatcg       480
     gtgacgccga taccgttctt gaggtatatg gcacaccgct agattggaaa attattaagg       540
     ctaatttaat ttctcactat aacgataaga gagatgctac aactcttaca cgggagttgt       600
     ttttggcaca ccaaacctct tctatcgaag acttttacgg gagagtgcaa catctactct       660
     ccttactcgt caaccacgca aatattgcca tcgacgatcc tactgtgaga accgaccgaa       720
     ttaaaacaca cagcgagaac gctctgcaag tatttttagc cggcttgaaa gagccgatag       780
     gtggaaatat tagagcccgt agaccagaaa cgttgaaatc agcgtttgac gcttgcatag       840
     aagaacaaaa ctttttaaat aaatcagggt ttacaaataa tatgccacca aaacacacaa       900
     gaaacccatt tttacctcca gaaaaaccca atcacgggat tccaagaaca tttaatggta       960
     atcctcttcc tttacctcca cggcaacaaa attattacgc tcccaatcca ttcagaaatc      1020
     atacgttctt taggccacat cccccacaag aacaaaaacc tgttcccatg gaagtagata      1080
     aatctattag aagtgcgaac ataaattacg caaatagacc accaacccga ttcccaccgt      1140
     ttagacacca acaaccgttt cgaccttttg gaaacccacc gatggggcca agacagcctt      1200
     ttccaccaat gccacctcga ccctttggga atccaacctt tccccatcaa ccatttcgac      1260
     aaactcaggc tccgaaattt attgtagaag aactaacaaa tcttgaacat gattattcat      1320
     atcatccata tttccctgaa gactactatt atggctataa cggctacgat tacagtgacg      1380
     attatcctga ataccamgaa tcgcaagagg ttcaaccaaa tacatcaaag gccatatgcc      1440
     aaaatgaaga gaactcgacc gacgaaataa atttttcgag ggattccgaa aacccacaag      1500
     gcacatagag ccacacaatt tcattccata cgttgaagtt acaacaattt tcggaaaact      1560
     taagctcctt atcgacacag gagcgaacaa aaattattta aaccctcaac taataaaaga      1620
     taaaactata actattcatg aaacaccctc tgtcgtgaaa aatgtttcag gtatgcataa      1680
     aattaatcaa tccatatatt tcgcaccgtt taaagataaa ccaccaatca agttctttct      1740
     cttcaaattc cattcctttc tcgacggatt gatagggtac gaatcgctaa cccatctaca      1800
     agctaatatt attacatcat cgaatttact acaattccca gatgaaacga tctctatgag      1860
     aagattgtat ccggaatcat tttcaattaa aattaacgct catgaacaaa cggttattga      1920
     gttgccaaca accgcaggag acggagattt tctggtagaa aataattttc cattaacaga      1980
     agatgtgatt gtcattcctg gtctttataa agcaaaggat aataaagcaa atatcatcgc      2040
     cttgaatacc tctagctctc cagttcaaat aaacccaaac agacctcttt ttgcggaggt      2100
     gaataatttc gaacaaaaat ctcaaatatt atcagagaat ggcaataaca agcacaaact      2160
     gaaaaaaaat cttcgactag aacatttgaa cgaagaagaa aggacaaaat tgttaaaaat      2220
     tattgaaaaa tacggaagca ttttccacca ggaaaaacaa cctttatcat ttacgaatgc      2280
     aattaaacat aatatcaaaa cgaaggatga aaatccagtt tactccaagt cctacaggta      2340
     cccattctgc cataaggaag aagtacagag gcaaatttta gatatgctgg aacaaggaat      2400
     tattaggcat tccaatagtc catggtcatc acctgtctgg gtggtgccga aaaaactaga      2460
     cgcgtcagga aagcaaaaat ggaggcttgt catcgactac aggaagttga atgacaagac      2520
     tgtcgaagac cgctatccaa tacctaatat atcggatata ttagataaat taggtagatg      2580
     catgtatttt tctacgttgg atcttgcatc aggattccat cagatagaag ttaatagcca      2640
     agacattccc aaaactgctt tcagtgtcga gcatggacac tacgagttcg tgagaatgcc      2700
     ttttggattg agaaatgctc catcaacctt tcaaagggtt atggacaata tattaagaga      2760
     acacattggt gtcagatgtt tggtatacat ggatgacatc atagtattct cgacaagttt      2820
     gcaggaacat atagaaaacc ttgcaaaaat tttcgaatgt ttgcacagat acaatatgaa      2880
     agtgcaactt gataaatgtg agtttcttaa gaaagaagta ggtttcttag gacacattat      2940
     taccccagaa ggcgtcaagc cgaacccagc aaaaatcgaa gctgtgcgga attggcccct      3000
     tcccaaaacg gaaaaggagt tacgaggatt ccttggtgtg ataggatatt acaggaagtt      3060
     tattaaggat tttgcgagaa tcgcaaaacc cctaacaaac tgtttcagga aaggggagag      3120
     tattcatcac acaaaggagt tcatagaagc cttccacaaa tttaaaaata ttttgacaag      3180
     cagcagtatc ttacaatacc cagattttac acaacaattt attgtcacca cggacgcatc      3240
     gaatcatgct gtcggtgccg tcctgtcaca aggaattgtt ggtagtgata aacctgtcgc      3300
     atatgcatcc agaactctaa cgaaatccga agagaaatta ccagcaatag aaaaagaact      3360
     actcgcaata cactggggtt gtaagtactt taggccatac atttttggta gaaaatttgt      3420
     gttatacact gatcataaac ccttgacgta tggcctgcac ctaaaaaacc ctaacgacaa      3480
     agttctaaag tggatggtag acctccgtga atttgatttt gaggttaaat ataaacccgg      3540
     caaacagaat gtagtcgccg atggtttatc tcggatacct cacgaaatca acgttaacga      3600
     aggcggatcc gaaactgaca gcgacgatag ttcatcagac atatctgtac attctgcaaa      3660
     cacagacgat agcgaatata ttcccatgac attgaagcct attaactact tttcaaatca      3720
     gattattctt aaaataggag aattcgacga cgaccaaata gaagaagtat ttccaaaagt      3780
     ttttagacga accattacta ggatgcattt cggaatggga ctaataacac gcatttttaa      3840
     agattactgc aacccgtcaa aaattaattg tctatattgt cccgaagaac tcatcatgag      3900
     tttacagaca gtatacaaga accatttcgg acataataaa agtcttaaag ttaccttttc      3960
     acaaaaaatg ctacaagatc tgaaattacc agaagaccaa aatcttatca ttcgcaaaac      4020
     acatgaatct tcacatagag gaatttggga aaatcataag caaatatcgc ggaaatattt      4080
     cttcccaaga atgaaagtta aaatccgaca atttgtcaaa ctatgcgcaa tctgcaacaa      4140
     aaataaatac gaaagaaaac catataaaat taaactggga gagactccca taccgaaacg      4200
     accactcgaa atcatccatt tagatatttt tattgcgcaa cccgatatgt ttctatcaat      4260
     tgtcgacaaa ctatctcgat ttggaatcat tattccaatt aaatctagaa caatccaaga      4320
     tatccgtaaa gctatactaa aattctttag cacgcacgga aaaccagagc tgattgtctc      4380
     ggacaatgag cccgctataa aatcaataga agtaagaggg cttatggagg accttggcgt      4440
     ccaaatgtac tttacgccag caaaccatag cgagacaaat ggaatagtcg aaagatttca      4500
     ttcgactctt gcagaaatct tcaggtgtat aaaaggtcga catgaagacc tttctcaaaa      4560
     agaaaaattt ttgattgctt gtacacaata caacgaaact atacactcgg caaccaagct      4620
     caaaccgaga gaaatcttct ttggtattaa ggatcaagat gtcagacctc ttgatatcaa      4680
     tgaaataatt gaaaaaagaa ataagctcta cgaagaagta actctcgaat tgagtaaaac      4740
     acaaaaagcg aatttagatc aaagaaataa acatctggaa aatgccccaa aattacaaga      4800
     aaacgatcaa atctaccaca aagtacaagg aatcaaaaat aaaaccaacg aaaagtattc      4860
     tgaggtacat gttaaaaatg ataatacaaa gacattcatt gatgacatga accgcagact      4920
     acataaaatg aaaataagaa gaatcctaga ttaatacatt tctctatttc aggaagccat      4980
     gggatcaact acacttgtga tgattgggat tctatgtgta gccagtacac aaacgcatac      5040
     aatttacata caggacctat caacgaaccc aggactattg acgatcacat ctggacgttg      5100
     tttcattatc aaaggacaag atagactgta tcatgagatc gacctcgacc aataccaaaa      5160
     actactgaat aacgttgaca caatcataca aggactcaga cattttgatg cttttcatga      5220
     tctcaccgtt ttactttcca acaaatataa cagtatcttg aaacttttca ataatctttt      5280
     gccccatagt agaaacaaac gaggagcatt taatctccta ggctcaagta ttaaattaat      5340
     aactggaaat ctagatgata atgatctttt gcaaattaac cacgaaatct caaatttgaa      5400
     agtaaaaagc aacagcctaa tagaacaaaa caatcttcag attagaataa ataaaaaaat      5460
     agaaaatcaa gttaataaac tgacaaaaac atttaacgat caacaaactt tgataactag      5520
     agagctgatt aaaatcaaac aggggctaaa taatagaaca ggaatcaata acatatcttt      5580
     ccttattcag actttcaaaa caacctacca gctagatcag atagaaaaag aattagaatc      5640
     aattttcgaa acaacacact tagcaaacct taatgtaatt tccagaaata tcctagatag      5700
     atcagaattg taccttatta gagaaaaatt agaacgattt aacgttacct ttcaaaacct      5760
     tgatcaaaca tatgagttat tagggattag gtcagtcttc aaggaccaaa aattatattt      5820
     catcatcttc attccacagt tagagtccac aaacttcaat cgcatcttga tggagcccat      5880
     acccgtcgac agacgaatca tcacactgcc atttgcaacc gcacttgttg gaaataacaa      5940
     gacatttcta gtcaaagagg aatgtcactc tattggaccg aatacgatgt gcagcatgga      6000
     caaattatta gacatctcca aggacagatg tttttccaaa ctactcaggg gcttaccagg      6060
     taattgctca ttcaccaaat acaacaggga taacggaaac atcaaaaggc tcactgaaaa      6120
     ctacattgtg ataaaaaacg taccacaagt caaaatgact aacacctgca acctctccaa      6180
     cagaaccttg caaggtacct ttttgatcta tttcgcgaac tgctcagtga ctcttgacaa      6240
     tgtcacatac agcaatactg tttattacac caaaccacaa cagaccatta taccactaga      6300
     tggagtgaaa atagatcaac acattttaga gccaaacata acaatggaga tgctacaaga      6360
     attacatctc cacaaccgaa aacagatttc aagcctcgag cttaagaaca taacccacac      6420
     ctacactagt gtaggtttcg caatcctcag tataatttca gtaatagcca ccaccgttct      6480
     catctacatc aatataccaa aacgagcaat tgggagttca agccaactct atcctacacc      6540
     aagaaacata aatgcaagga aggagtacac ctttaccaat tcgggacgaa tcggtctcga      6600
     agggggagt                                                              6609
//
ID   Gypsy-667_AA-LTR repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-667_;
KW   Gypsy-667_AA-I; Gypsy-667_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-361
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-361
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2083-2083 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 361 BP; 123 A; 87 C; 72 G; 79 T; 0 other;
     agttacggag gacatcaacc cacacaaatt cgcaacggtc atcaagttcg ataatcaacc        60
     aaaggtatca tccggtcaca tcgcataagt ccacatcacc accaaagtcc aaccccaggc       120
     ggagccacgg caagtgcacc aaacgacgac gtagcaaatc gacctagcaa cagacggacc       180
     ccggacgacg gaagtatgca gagtatgcaa actggactat aaacgtaggt cagcagagta       240
     gggcaagtgt aggtttcatt atagcattaa ttagacaata aattcattct ttgttcaatc       300
     gtggaagtga taagtttaat tcttttttaa aaactgatct ccgatagccc aatacttaac       360
     t                                                                       361
//
ID   Gypsy-668_AA-I repbase;    DNA;    INV; 6798 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-668_;
KW   Gypsy-668_AA-I; Gypsy-668_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6798
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6798
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (24-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5366..6796
FT                 /product="Gypsy-668_AA-I_1p"
FT                 /note="env."
FT                 /translation="MSVIAPYQSQKLSIRDLQNDPLLLVEMKSCKIQTGTI
FT                 KIIHPINISSIEETAEILVQASYKSNVQATNPLTNMLRLKTKKLFSNLHQL
FT                 KPQQHHRAKRWDAVGTVWKWIAGTPDASDLHAINSTMNDLIDQNNQQYKVN
FT                 QNINDRIQKLTHAIKEITVQASLNDLMLNDLEIITSILNIDTLNQLLEDIQ
FT                 DAIMLSKLSITSNKILSIREILAVKGLLEEQGVNIHLPDEALQFVTPKFAT
FT                 SPGTLLYFMHIPLLDNSTSSIIRIYPIVNRNHIINEYPEYIVKNGNHIFIT
FT                 QKPNDYVQKYAYLKELNDRCITPLISGRKPECSAVFNNRTIYELISDNTIF
FT                 ISNIRNQTLESNCGPDNRTLEGNLLIQFANCTIKINNQTFKNEEFTSEPVL
FT                 IHNSFYNLNPDWNLKDEPDLGAIHQNTIENRRHLDHVYLEQSKLNLKFWNL
FT                 FGGVSLTGSTFLIIIVIIILKYGTGRSSLRGG"
XX
SQ   Sequence 6798 BP; 2394 A; 1508 C; 1219 G; 1677 T; 0 other;
     ggcgcagtcg aaactgcagg gggagtgatt ccaatgtgct aataccgtgt cgcgttcgga        60
     aatcaagtgt gcctgccgcg atcaggaaga ctcataaaac aattatcaaa attcgttaag       120
     tgtgtctgaa aatcggttta agtgcagtgc gcggatcatc cagtgaccag tggaagtgca       180
     acggagaaaa atcacccatc ccgcagagaa ccacatcgct ctcaatcccg gttcatatca       240
     aaccaagaga acgagggcaa ctaccgatta acttcacccg ctccgtcgtc gctggctgca       300
     taccagtcga cttgtggtaa gttaaagaac cgtatctttt attaaaatct gtctcgcttc       360
     ctatctggct acctggaata ggtacgctgc taactaacat ttccattaat taacaaccct       420
     agtataagga aaaagtgagt gataatagtg atatacccga gagatataag tgtttaagtg       480
     attgttttaa cagtatgaca acaagaggaa tgtccctcgc tgatctgcaa aatcaaatcg       540
     aggagttgag tgcgctcatt gagcgacaaa gcaaccaggc ccaattggcc aacgaacaaa       600
     tagctgctct tcaagcagcc tccgaagccg ctgctcgagc accggccatc caggcacctg       660
     ccgcagccgt tcaattccca aaaataccgg atctaattcg actagttccg gaatttgacg       720
     gaaacccccg aaatctatcc cgatggatag aatcggtgga gcagaagtta gaagaatcaa       780
     aaaaatttat cgcaccgaat gaccacccaa taattcttcc catctggttg ggaatcattc       840
     gcgataagat agtcgagaaa gcaaacgatg ctctcaccgc tagccacact cctctagagt       900
     ggggcagtat aaaaaacaca ttagtcgaat atttcggtga caaatcggat ttatcgattt       960
     taatttcacg gctgacaaac ttgagacaag ggtcactaac agtgacagaa ttttatcaaa      1020
     catgcaaaaa tcatggtggg gaataacaca gtaaatgaag caaaagcaat tatgggaact      1080
     tatgagtccc taatgataaa tgcattcgtc gatgggctac atgacacaat atctgatctt      1140
     acgagatcaa ctcgcccaca atcccttcta gatgcgtatc acgtcgcttc cgaacacgaa      1200
     gctgcattcc gaagaagacg ggaaaagaat tctaagaata ttccagacaa ttttaagcaa      1260
     aaacaaaacg ttacagtccc tcaacagaaa ccaatttatt ttcaaaatac atttagacct      1320
     ccaatacaag gcagttttaa cagttctggc tatcgccaag ctccacaaaa ttctcccggg      1380
     tttacacccc aatacaataa tggcgtagct agaccatttc aacaaaactt cgggcccaga      1440
     cccaatcaat tagcgattcc atacataaaa cctgaccctt ccggtcagaa ccgtcaaaac      1500
     ggtccaaggc aagttcctcc cttcaaaaat gcaacacagg ttaacatgca cgaaatgcaa      1560
     gaaacacctt tagaaatgca tcccaacgat caaagtcaag aatttcaata cgttcaagac      1620
     cagatcacgg caaatccagc aattgaagaa caagcagaag aattaaattt ttgcatggat      1680
     atggaacaac cgataaccga atgacgagta actttcttcc atatttagaa atccccaaga      1740
     aaaataatgg gagttacaaa ttccttattg atactggggc taacaaaaat tatattgcac      1800
     cggaaatagt tccaaacaga ttcatattat ccggtccttc acagaatatt aaaaacgtaa      1860
     gtggtaaaca caaagtcaac caatatgcct tcctgaaccc cctagaaaat ttcattcacg      1920
     gggttcctaa acaaaaaatt tttctattta gatttcacga cttcttcgac ggccttatcg      1980
     gcttcgaaac acttcgtttt atgggtgctt taattgatac agcaaccaat tcgatcataa      2040
     ttaacgatca tatcataccc ttgcaaaaaa agttccctac caaggaacaa ttgaattttc      2100
     aagaacacga aactcttgtg aaagagtttc ctgtcagaat taaagatggc gattttttca      2160
     tcgagaatga tattccgatt gcgcaggacg taattcttcc ctcaggagta tataatgcgc      2220
     aaaacggtat agctacattt ctcattatta atctcagtaa caaaccagtg aatgttaaaa      2280
     tcgacaagga agccctgttt acagaaatcc atagtttcga acaaattcct cctgaatcat      2340
     tcaaatcgaa tggtcagaaa atggaatcca aagcagcaat caaggataaa atcaggatgg      2400
     ggcatttgaa ctcagaggag gaggataaac tccttaacgt tttaaaacaa tttcccgaag      2460
     tctttcacga caacgacgga aaactgacat tttctaacgc cgttagacac cccatccata      2520
     caaaggacga tctgcctatc tatactaaaa attaccgcta ccctttctgt caccgagaag      2580
     aggtccagcg gcagatagtt aaaatgttag accaaggtat tattcgacca tcgaatagtc      2640
     catggtcatc cccaatttgg attgtaccaa agaagatcga tgcttctggt acgcaaaaat      2700
     ggcgtttagt ggtagactat cgtaagctta atcaaaagac cacggacgat cgctacccaa      2760
     ttcctaacat caacgatatt cttgacaagt taggaaaatg ccaatatttt tcgacgatag      2820
     atctcgcttc tggtttccac cagatcgaag tccataaaaa agacattcag aaaactgcgt      2880
     tcagtgtcga tggagggcac tacgagtttg tccgaatgcc tttcggatta aaaaacgcac      2940
     ccgctacttt ccaaagggta atggacaacg tccttcggga acacatcggt gtgcgatgtc      3000
     tagtatatat ggatgatatt atcatctatt ctactagcct gcaggagcat ttaataaacc      3060
     taaaaaaggt tttagagacg cttcgcaaat ataacttaaa aatacaactc gacaaatgcg      3120
     aattcctcca aaaggaagtt gcatttctag ggcacgtagt aacgccagaa ggggtgaaac      3180
     ccaaccccga aaagattaaa gctataaagg attggccgtt acctaataat gaaaaggagt      3240
     tgagagcctt tttaggaatc atcggctatt acaggaagtt cataaaagac ttcgcaaaaa      3300
     tttcaaaacc attgacccag caactccgca aaggggaaac catcagacac accgctgact      3360
     tcatttcagc ctttcaaaga tgcaaagaaa tcttaacgag cagccatgtt ctgcagtatc      3420
     cagatttctc aaagcgattt atactgacta ccgatgcttc gaattttgcc ttaggcgcgg      3480
     tactgtccca aggtccaata ggatcggaca aaccaatcgc ctttgcctct cgcacactta      3540
     cacaaaccga ggaaaaatac tcggcaatcg agaaggagct tctagccatc gattgggcgt      3600
     gtaaatattt tcgtccctac ctcttcggta gaaagtttag tttgtacaca gatcataaac      3660
     ccctgacgta cgccctgaac ctcaaagggt caaacgacag gctaatccga tggaagctac      3720
     ggctcgagga attcgactac gaaatccatt acaggcccgg aaagcaaaat gtgatcgccg      3780
     atgggttatc cagaataccg caaccgcaac aaataaattt gaacgaacaa gtatcgtcct      3840
     cgtcatcttc cagcgatgat agtgaagacg acaataatac tgtccattct agctcgtcag      3900
     atgctagcga acttataaga atgactgaac gccccataaa ttattttaaa aaccaaattt      3960
     tgatcaaaga gggtgatcaa aattcggaag tttacgaaga aatatttccc tcaatttttc      4020
     gtcgaactat taccagatct gctttcggaa taccctacgc tataaaaatt ctcagagatt      4080
     acatgagtcc taccaaaatc aattgcatat tatgtccgga aaaatggtta aacacattac      4140
     aggtcgcata caaaaactac ttttctagga ataaaacgtt caagctcgta ttaacacaat      4200
     caatcttaca ggatctgatt accgcagaag agcaagatca aataatagaa agagttcacc      4260
     aacgtgcaca caggggagca acagagaact atgaggtcat caagaaggaa ttttattttc      4320
     ccaaactcca gaagaaggta caggaattca tcaacctctg caaggaatgt ctggagagta      4380
     agtatgaaag atgcccttat aaggttaaat ttgcgtacac cccgattcct aaaaaaccac      4440
     tagacattct tcatttagat attttcattt catcgccaaa cacctttcta tctgcaatag      4500
     acaagttatc taaatttgcc atgcttattc caataaaatc tagctcaatt cctgatgtca      4560
     agcgaggcat agtaaaattg atttcgactt ttggaactcc taaattagtt gtctgcgata      4620
     atgaagcagc atttcattct attgaggtaa gagggtttct tcaaaggtta caggtagaaa      4680
     tgtattttac tccctctaat cacagcgaaa caaatggaac agtagaacgg ttccattcga      4740
     ctctttcgga aatattcctt tgtatcaaac caagttacaa cgatttaaca aacaaagaaa      4800
     tttacagaat cgcgacagcc ctttataact ctacaattca cgcagttact aaattgaaac      4860
     cattagaggt tttttatggc gtaaaagagg gcgaggaaag aacactaaat ttggaacgaa      4920
     ttcttgaaaa tcggaatcat gtatttgacg aagtagttgc aaaattagaa gccaatcagg      4980
     cgaaaacaat agaagcgaga aatagagtcc gggaagacgc tcccaaactt aaaaagagag      5040
     aggtaatcta caatagaata cagggtatta gaagaaaaac aaaaagaaga tacaagccac      5100
     aaatcgtcaa aaaggataga aggaaaacct atatagacgg tcgcgacatt aaacttcata      5160
     aatctaaatt gaaaagaaga agaaaaactc cactctaaaa atctcacttt tgaccatcat      5220
     aacacttaaa aacaagtaaa ctctatttaa agttgtggaa accttagctt aatagtccaa      5280
     attttcaata atctcaagtc accagtaacc atactaacca cctgctaata ttgttaaatt      5340
     tcagataact ttattcatca tactcatgtc tgttatagca ccatatcaat cccaaaagct      5400
     gtcaatacgt gacttacaaa acgatccgct attgcttgta gaaatgaaat cgtgtaaaat      5460
     tcaaaccggt actatcaaaa tcattcatcc tatcaatatc tcgtcaatag aagagaccgc      5520
     ggaaattctc gtacaagcct catacaaaag taatgttcaa gcaactaacc cattaaccaa      5580
     tatgttgaga ctcaaaacaa agaaactgtt cagcaaccta catcagttaa aaccacagca      5640
     gcatcaccga gcaaagagat gggatgccgt cggcaccgtt tggaagtgga ttgccggaac      5700
     tcccgacgct tccgatcttc atgccattaa cagtaccatg aatgatctaa tagatcaaaa      5760
     taatcaacaa tataaggtaa accaaaacat caacgaccgg atacagaagc tcacacacgc      5820
     aatcaaggaa ataaccgtac aagcaagttt gaatgatctt atgttgaacg acctcgagat      5880
     catcacctcc attttgaaca tcgacactct aaaccaatta ctcgaagaca tacaggatgc      5940
     aatcatgtta tcaaaattat ccattacatc gaacaaaata ctatcaatac gcgaaatact      6000
     agctgtcaag ggattacttg aggagcaagg agttaatata cacctgccgg acgaagcact      6060
     gcagttcgtc accccaaagt tcgccactag cccaggaacc ttgctgtatt tcatgcatat      6120
     accgttgcta gataacagta cttcgtcaat tatcaggata tacccaatcg tcaaccgaaa      6180
     tcatatcata aacgaatacc cggaatacat agtaaagaac ggaaaccaca tctttataac      6240
     ccaaaaaccg aatgactacg ttcaaaaata tgcatacctc aaggaactca acgacagatg      6300
     catcacgcct ttaatcagtg ggagaaaacc tgaatgcagc gcagttttca ataatcgaac      6360
     aatctacgag ctcatctcgg ataatacaat ttttatttca aacatcagga accagacact      6420
     tgaatcaaac tgtggaccgg ataaccgtac attggagggt aatttgctaa tccaatttgc      6480
     aaattgcaca atcaaaatca ataatcagac atttaaaaac gaagaattca ccagcgagcc      6540
     tgtattgata cacaattcat tctacaacct caatccagat tggaacctta aagacgaacc      6600
     cgacttagga gcaattcatc aaaatacaat cgagaaccgt cgccacttgg accacgttta      6660
     cctagagcaa agcaaactga atctcaaatt ttggaatcta ttcggaggag tttcactaac      6720
     aggatctaca tttctaatca tcatcgtaat catcatactc aaatacggaa cgggacgttc      6780
     ctcacttagg gggggagt                                                    6798
//
ID   Gypsy-668_AA-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-668_;
KW   Gypsy-668_AA-I; Gypsy-668_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-338
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-338
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2084-2084 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 338 BP; 105 A; 95 C; 60 G; 78 T; 0 other;
     agttaccgaa ccttcatacc cgatcccgga cttgtccgac atcatagaac ggatgaggcg        60
     cacacagcac caaacgcaac aacaacatca gccacaagca taagccgact catcaaatag       120
     ctaaactcca ccgacccagc agaacgtgac aggacgtacg actcgcgttt catagtttcg       180
     tagcgtaagc atttatacag ggaatggttt ccacaacaag tcaggccttt gtaatttgga       240
     acgatcgcaa taaatcagtc ttagattaac tttcaacccg tcaacttcta ggcttctcct       300
     tttttaaaaa cataatccgg tagccccgac ttatcgct                               338
//
ID   Gypsy-669_AA-I repbase;    DNA;    INV; 6937 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-669_;
KW   Gypsy-669_AA-I; Gypsy-669_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6937
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6937
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2050-2050 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6937 BP; 2472 A; 1511 C; 1230 G; 1713 T; 11 other;
     ggcgcagtcg ttttccgagg ggatagtgat cccatgtagt gtcaactccg aagtcgatca        60
     aaaatcacag tgtgctgccg cgatcaggaa aacccgccaa caataattaa ttattcgtcg       120
     cgcgttcgaa aatcgctctt agtgtagtgt agtgatcagg cgatcgctgg aagcgctgca       180
     aggaacccac tggcccccgg aggaactawa acgctctcaa cccggagctc agcttacccg       240
     cctaggcatc actggtggca taccagtmga tttgtggtga gtatctttta aaattaaaac       300
     tatccttttc wtcctcataa caattttcct tctataataa actaataact aaawaactgg       360
     tgacttaaag tgaattgtga atcgatgaca aaaagtgtga attgatgaca agaagttgtg       420
     aattgatgac aaaaaattgt gatttagaac aaaaattcgt gaaattggtg aaaatataaa       480
     acttgttttg gaaagtgatt ttcggtattc agtatatttt tggaaaattc aatacaaata       540
     actaaataat cgataataaa gtgctaaatt tagagtaaac tgtgaattga tgacaacaat       600
     tgtgatttaa aatatctgct tggaattgat aaaacatatt tttgcgagaa gtgatttttc       660
     ggtattcagc gatcttcttt ttttggaaaa ttcttttggc tctacttgaa gcctttacta       720
     aacttagttt tgttcagaat aaatgctaac tagagcaatg tcagcagatc tacaagattt       780
     aatcgatgag ctgatggcta aaatggagca acagcggctc cagatttccg ccttagaagc       840
     ctcccaaaac agaaacgctt caacattgca acctacagct gcgcatatgc cagctgaaag       900
     aaaattcgac ggtttcagtg tacctgatcc catcaaactc atcccaactt tcacagggga       960
     accagcaatg ttgtcctcgt ggatcgactc cgtcgatcaa aagataaaat actgcgagaa      1020
     agtaattaat gaccaatcca cagtagacca tgttatgcca ctatggactg gcataatcag      1080
     agacaaaatt attaatgaag cgaatgatat cctcattcgc gggcaagtca aattggtttg      1140
     ggccgatata aaaaaagccc tccaagacga actcggcgat aagcgtgatc tagccacgct      1200
     catttcaaaa atttctggat tgaagcaagg tagtcaagat ctattaagct tctaccaaca      1260
     atcaaaaaaa ctcttagctg acataaatgc gaacatcctc gcaaacgatg acactaaaag      1320
     ttgtgccaaa gtccttatgc taagctatgg agccatggtt acaaatgctt tcatagatgg      1380
     cctgccagac catctatctt ctctaacaag aatctacaaa cctaaggatc tccaagaggc      1440
     ctatgaaggg gccttagaac aacacgtggc cagccagaaa agacgcgaaa gactcgcgaa      1500
     gctccacgat tctaacgtca cgaaaaattt taataacaac acaaaatttc accctgcagg      1560
     acaaaccggc cgagggtaca acacctcgaa tagaccaatg aatccaactc aaaattcttc      1620
     ccagggttac tctcaaccca ggatcaataa ctttaagaac gggcctggac aatacggcca      1680
     atcgcggttt tcaacaccac caaatataaa acctgatcct tcaggacaat ctagattcag      1740
     aacgcaaatt aatatgcacg aaggtgaaga acagcctcac tgttctaacc aacttgagcc      1800
     tcaacataac attccgaatg aggaacactc agcggaaagt tacgtacaag atgaggagta      1860
     tgaggaatta aatttttgta cggatccgga tcaagggatc ccggaataag taataatttt      1920
     ctcccgtatc tggaagtacc cagaagtgtc aatagacctc tgagatttct aatcgatacc      1980
     ggagcgaatt ataattatat atctcccgaa ctagtaccaa cccatagcat cgggacagga      2040
     ccacaacaga aaataaagaa tctgagtggt ctacatcgca tcgatcgata cacgcacgtc      2100
     aatccgttcg tgaattttat aaacgatcta ccgaagttaa aatttttctt atttagattc      2160
     catgactttt tcgatggtct tattggattt gaatccctwa ggacacttgg tgcagtaatc      2220
     aatacagcct ctaacacgat ctgcataaat gacatcgaaa tacctcttca taaaaaattc      2280
     ccaaccagag aacaactcaa ctttcatgaa ggtgagactt tggttaaaga atttccagtt      2340
     cgaaaaaagg aaggagactt cttaatcgaa cacgatcttg tcataggaca agatgtgatt      2400
     ataccttcag gagtatatag tgctcataac ggtatagcaa cttttccgat gataaatctc      2460
     agcaacaaac aattacagtt atgtatcgac aaggatgctg tgtacacaga tcttctcaac      2520
     ttcgaagaaa tttccccaaa tcctaattac gttaacagaa cacaaaaggc tgaccaaacc      2580
     acaaaagcaa aaacagagcc cttcgctgat aaacttagac tcgacaactt aaatcctgag      2640
     gaaaggccca aattgcttaa agtccttaat aagtttagag atgtctttca tcacgaagaa      2700
     gaaactctgt cgttcacaaa tgctatacgc cacaagatca ttactaaaga cgatctaccc      2760
     gtatatgcta aatcgtaccg ttatcctttc tgtcatagag cagaggttca acgacaaatt      2820
     cataaaatgc tggagcaagg cattatccgt gcttcagaaa gcccatattc ctcgcccgta      2880
     tgggtagtgc caaagaagct cgatgcttct ggtcaaagga aatggcgttt agtcatcgac      2940
     taccgtaagc tcaacgagaa gacggttgac gatcgatacc caataccgaa cattaccgac      3000
     atcctggata aactwggccg atgtcagtac ttttcgacat tggatctggc ctccggattt      3060
     catcaaatcg aaatccataa aggtgacatc caaaaaactg ctttcagtgt cgagggcgga      3120
     cattatgaat ttatccgaat gcccttcgga ttaaaaaatg cccctgccac atttcaaaga      3180
     gtaatggaca acattctcag agaacatatt ggcgttcgtt gtctggttta tatggatgac      3240
     attatcatct attcaaccag ccttcaagaa catttgatca atttgaattt gatattggaa      3300
     acgttgagga aatacaatat gaaaattcaa atagataaat gtgaatttct tcaaaaggag      3360
     gtcgcttttc taggccatat agttactcca gaaggagtaa aaccaaatcc cgagaagatt      3420
     aaagctattc gagagtggcc aataccaaag aatgaaaagg agctgagaag cttcctaggt      3480
     gtaattggtt actacaggaa attcatcagg gattttgcta aaatttcaaa acccctaacg      3540
     caacaactcc gaaaaggaga aacaatccgt cacacaccag aatttactga tgctttccga      3600
     cggtgcaaag aaatcctaac cagtagccac gtactacaat acccggattt ctcaaaacga      3660
     tttgtcctca cgacggacgc ttctaacttc gcattaggtg cggtattgtc acagggtccc      3720
     attggatcag acaagcctat cgcctttgct tctcgtacgc tatccgagac tgaggtaaga      3780
     tactcagcta tcgagaagga attgcttgct atcgactggg cgtgcaagta cttcagaccc      3840
     tatttatttg ggcgtaaatt cagtctctac accgaccaca aaccattaac ctacgccttg      3900
     aaccttaaag gatcaaatga caggttaatt aagtggaaat tacggctcga ggaattcgac      3960
     tacgaaatcc attacagacc cggaaaacaa aacgttatcg ccgacggctt gtctagaatt      4020
     ccacaacaaa aggaatgcaa cacactagaa attaatgcta atgaagacga agaagaagaa      4080
     tcttcatcgg acgctgaaac ggttcattca gctgaatccg ataacgagga tctaattaga      4140
     atgactgaga aacctctaaa ttattatcgt aatcaaattt taatttctga aggttcgcag      4200
     aacaacgaag tacgcgaaga aatctttccc tcaagatttc gacagaccct tactcgagca      4260
     tcattcggta taccctatgc cataaaaatc ttacgggatt ttatgcaccc tacccggaca      4320
     aattgtatat tatgcccgga aaaatggtta aatacactgc aaatagcgta caaaaactat      4380
     ttctccagga acaaaacttt taaaattgta ttaacacaga ctattctaca ggatctcacc      4440
     tctgaagaag atcaagataa aactctggaa gacgtccacc agcgagcaca tcggggtgcc      4500
     gacgaaaatt atgaggccat caagagaaga ttctactttc caaacatgcg gaaaaaggta      4560
     caaaccatca tcaatctgtg caccacgtgc ctggaaagta agtatgaaag atctccctac      4620
     cgaattaaat tcgcgtatac accaatgccg aaaaaacccc gggatatatt tcatgtagat      4680
     attttcattt cctccccctg tctttttata tcggcagtag ataaattctc aaggtatgcc      4740
     atgttagttc ctattaaatc tcgttgtatc cctgacgtaa aaaggggaat ggttaaattg      4800
     tttaccacac atggcaaacc aagaatgatc gtctgcgaca atgaaaccgc tttcaagtcc      4860
     gtcgaaattc gtagccttct gcaaagactt gaaatagaga cctactacac accttcagac      4920
     catagtgagg tgaacggaat cgttgaacga tttcactcaa ctctcagcga aatttttaga      4980
     tgctcaaaga gcaaatatcc agatctgaat aacaaagaac tttacaaaat tgctacttca      5040
     ttatacaacg aatccattca ctccgcacat aagagaaaac ccgtggamgt gtttttcgcc      5100
     gttagggagg aagaagaagg gcctttgaac cccgaagtaa tgttggaaaa tagggacack      5160
     cttttcgatg aaatcatggt caaattagga gagtaccaaa agagaaccat agaaaatcat      5220
     aacaaaaata ggaaagataa accaaaattc aaaaaaggag acataatata caacaaaatt      5280
     cagggaattc caaacaaacg aaagaacaaa tttaagaaac aagtagttag acagaacagg      5340
     aagaaaaccg tcatagatac caggaatata aaattacaca agtccaaatt aaaacggaag      5400
     aggaagcctt aattataaca attatttcaa aaaaaaaaaa ataacacaaa actaacacta      5460
     attttaactt acagataaat tggatgtatg ccacactttt attgcacata aacttctatt      5520
     tcatatacgg tgaaccacta ctacacatca ttaatacctt aaatgatcca atcgtgcaga      5580
     tcaaagaaac tgattgtaaa atccaaacag gatccctaaa actaatacac cctatcaatt      5640
     tagcaagaat agaggaaagt atagaaatwa taacaaatac tttttataac aaccttaacc      5700
     ccactaaccc actacaagaa gtaatcaaat ttcgaataaa aaagttatac tcaaccctct      5760
     acgggctgaa accacgacgg acacacagac gcaaaagatg ggattccata ggcacggcat      5820
     ggaaatggat tgctggatca cckgacgccc acgatttgga aatcatcaat tcaactatga      5880
     acgacctcat caaacaaaat aatcaacagt accagataaa cgaaaatatt aacaacagga      5940
     tcatacaact cactgaaaca atcaaccaaa tagccggatc actcaacaac aacaagattg      6000
     gtctcgatac actagatgcc atcaccacaa tgctcaatat cgacgtcatc aatgaattac      6060
     tggataacat tcaggaagca atcacgctta caaaaatcgc cgttaccaac aacaagatgc      6120
     tgtccacaag ggagataaac gtcatcaaat caacactcca ggaccaagga gtgaaaaccg      6180
     atttccctga cgaagcctta caattcgtca cccctaaaat tgcagtgaag aatggagact      6240
     tgctctacat tttgcatgtc ccaaaattag aaaattctac atccacaatt attagaattt      6300
     atcctctcat cgtggacaat cagatcataa agtattatcc aagccacgtt atacggcacg      6360
     gatcaaaact tttcacaaca gacaacccaa aggatttcgt tcaaaggtca gccaatatca      6420
     atgagtttaa agacgaatgc ctcagacaaa tcatacttgg caagcattct cgttgtaact      6480
     ctattttcaa aaacgatacc acacatcaac tggtaaacga gaacaccatc ataatctcga      6540
     acgccaaaca tcatcttctt gagacaaact gcggacccga caacagaaga ctcactggaa      6600
     acttcattat caaattctca aactgtacgg taaattttaa tggccaaacc ttcaaaaatt      6660
     cagaaactac agtcaacaca gaaattctat atggcggaat ccacaatacc tcaattcact      6720
     ggcatctctt caaacaacac gatatagcag aaatcagcaa cacagcgata aataatcgac      6780
     agaaactgga acacgtttat ctgaaacaga atcacatgaa catcaaattc tggagcctac      6840
     ttggtggatt ttcgctcaca ggaactgcca caatcatcat tatcatcata ctcatactma      6900
     aaatcggacc gagacgttcc tcacttaggg ggggagt                               6937
//
ID   Gypsy-669_AA-LTR repbase;    DNA;    INV; 465 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.04, Created)
DT   24-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-669_;
KW   Gypsy-669_AA-I; Gypsy-669_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-465
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-465
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2085-2085 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 465 BP; 145 A; 144 C; 63 G; 113 T; 0 other;
     agttacaatc gaaccctcta ctaaaacccc aactctaaca accgacccca gtctagcaga        60
     catttctgcc aagctccaaa acctccaact acaacaacag caagcgtcaa catccttagc       120
     cgcattggaa caaccatcac aattataaag tgaccgtcag cagtataatc gtcaagccaa       180
     cactcagcaa ccatagccca ccaacttcca cgaagtcacc tagcaaccag cattcctatc       240
     ataacacgtt ggcacacctc gccgaatcag caacacgcgt cgacgaccgg acgacgcgat       300
     ccagttacaa tatttttact tagctagggc tctttcctct tccaagctag gcctctgtaa       360
     caattaattc acaagtaata aatcattcta gtttcgttct ccataccgat cagttcggtc       420
     tttcagtttt ttaaaaacct ttccatgtga ctctgtcaca taatt                       465
//
ID   Gypsy-66_AA-I repbase;    DNA;    INV; 4643 BP.
XX
AC   supercont1.238;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_AA_;
KW   Gypsy-66_AA-LTR; Gypsy-66_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4643
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.238; Positions 1612705 1608063.
XX
CC   Positions [3693-4154] - Integrase core
CC   'ATACC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1586..3082
FT                 /product="Gypsy-66_AA-I_1p"
FT                 /translation="MLIDSGCQKNIIDDTTWRKLMQQGISVSNFRDSDETF
FT                 RPYGMHSNPLVVCGMFESTISIMQNSRETQKDATFYVIEGGTQPLLGRTTA
FT                 VEMGVLVLGLPSTQPVEVNQLWKGERHQFPKIPGIKLKISLDDKVVPVIQH
FT                 ARRPPIALLNRVEEKLTSLEKMDIIEPVSEFSPWVSPLVVIVKDNGDLRLC
FT                 VDMRQANRAIQRECYMMPTFEDFLPQLNEARFFTRLDIKEAFHQLELDESS
FT                 RHITTFITHKGLFRYKRLMFGMSCAPELFQRVLEQILACCENVVNYLDDIL
FT                 IFGSTLEEHNAALERVLSTLKEKNVLLNHKKCQFAVTEVEFVGHHLSSEGI
FT                 RPLENKLSTLQSFRPPENVEELRSFLGLANFVGRFLPDLGTVTAPMRGLLR
FT                 SNTRFEWGQHHQESFEALKSLISNVKTLSYFDNSLRTRLIVDASPFALGCV
FT                 LVQFKSDHDDSEPRIISYASKCLSDSEKEVLSNRKRSPRYSVGCRAIFGIP
FT                 DRT"
FT   CDS           2973..4607
FT                 /product="Gypsy-66_AA-I_2p"
FT                 /translation="MPVSVCQIQKKRYCQTEKEALAIVWAVERFSVYLIGR
FT                 DFELETDHKALETIFSPTSKPCARIERWVLRLQSFTFNVKYRKGSTNIADP
FT                 FSRLVQNAVNEEFDGDNNFLVLNIVSSAAIDTNEIEDVSQNDHEFGLLRDC
FT                 LQTDVWKHSEVKPYEVFKHELGFVGDVLVRGTKLVVPKQLRKRMMDLAHEG
FT                 HPGETVMKRRLRERVWWPGIDKEVVQYVQRCEGCRLVSLPERPEPMQRRQL
FT                 PSNPWIDVAIDYLGPMPSGEYLLVIIDYYSRYKEVEIMTRITAKDTIFRLD
FT                 RIFTRLGYPVTITLDNARQFASDEFDQYCKARGITLNFTTPYWPQENGLVE
FT                 RQNRSLLKRLQISHGLKRDWKADLQDYLMMYYTSPHSITGKTPTEMMCGRT
FT                 IRSKIPSISDLQHCPRFSDVADRDRILKEKGRETADNARHSKQSNLETGDS
FT                 VLMKNVLPGNKLTSNFAANEYTVVDKKGSRVTVEDSTSGKTYQRNSSHLKK
FT                 VIKATEVPKEQQLTENYVRRHMDTMLPQTEQKQLRFYPGLPDTFRDFTM"
XX
SQ   Sequence 4643 BP; 1432 A; 943 C; 1126 G; 1142 T; 0 other;
     aatctggcga cgagaataaa gtggaagcag ctaataaagg taagttgaaa aaacatgaaa        60
     acataagtgt ttttctcgaa atataaccat tataaatgca acgcgttttt cctctgcatg       120
     aaaacaaaat ggcgtaagaa tgtgaggtta acattgagct ctttttgtgt ttgttctcaa       180
     ggaagagaag tatccggcca tcggcggaag ggtcttagag accgagttga gtgcaagcat       240
     ctggccatcg gcagaagggt cctggagacc gagattaaca agagattccg gccactggcg       300
     gaagggtccc ggagaccgac aaaaacaaga aaatccggcc actggcggaa gggtcccgga       360
     gaccgacatt gacaagagaa tccggccact ggcggaaggg tcctggagac cgtgctcaat       420
     tcaagtatct ggccattgac ggaaggatcg taactaaata tccggccttt ggcggaaggg       480
     tctaggaaac cgcagcagca ttgcttgagg tctacgaaac cggtcagaag agaagcaaaa       540
     gttagcgaca cacagcgagc ctacgaggcc gaacgcaatc agagatggat aagtggaata       600
     ttcctcagtt caatttcaag gcgttgccaa agagtcagat tcgcgatgct tggaagcgtt       660
     acagaaagaa tttcgagtat gtacagctgg caaatcggga agcgaataga gtcagactga       720
     aacatatatt tttggctctt gctgggccgg aagtccagga ggtatatgag tcaattccgg       780
     gagcagacgt ggaaccagcg gctggtattg acccattcca gactgcattg accaagttgg       840
     atgagttttt tgctgcaaaa tatcatgacg catttgaacg aaacttgttc tggacgctaa       900
     agcgtgaatc tgatgagcag ctggaaaagt ttctttttcg tgtgatggag acagccaaaa       960
     gctgtaattt tggtgcaaca acccaagaaa gtcgagagat cggtattatc gacaagatga      1020
     tcttattttc accgccagaa ctgaaagaga agctgcttgc tgaagaacgg ctcacgttgg      1080
     aaagtctaac caagattgtg caatcgtatg gatcgttgaa gtatcaggta agccagtttt      1140
     cggctgctgg gcttcataca agagatgtgc caagaccgga aacgagtcag gaagcgaaca      1200
     ccggttggtg aatgttatcg ctgcggacga accggtcact atggctacga cgcgaactgt      1260
     ccagccaaga accaaacatg taataaatgt gggaaaaaag gccattttgc gaaacgttgc      1320
     aaaactccta cttcaactcg acagttcaag cggaaagctg aattttcaaa tgaaggaaga      1380
     agttcgaaaa gggtaattat tttaaatttt caaaccttaa atttgattcc taatcttttg      1440
     aacctgggtt taggtcagga ccatcaacca tgttgatgct ccgagcgcta aagaagatac      1500
     ggctaagatt tctgaaagct tcatctacaa tataggaaat ggcgaagagt ttctctggat      1560
     caggttaggc ggaattccag tccagatgct gattgattcc ggatgtcaaa agaacattat      1620
     tgacgacacg acctggcgaa agctgatgca acaaggaata tctgtcagca acttccgtga      1680
     ttccgatgaa acattccgtc cttacggtat gcattcaaac cctttagtgg tttgtggcat      1740
     gttcgaaagc accatctcga ttatgcaaaa ttcccgtgaa acacaaaagg atgctacttt      1800
     ctacgtaatc gagggaggaa cccaaccgtt actgggaagg actacagcag ttgaaatggg      1860
     agtattggtc cttggccttc ctagtacaca accggtggaa gtaaatcaac tgtggaaagg      1920
     agagagacac cagtttccga aaattccagg tataaaattg aaaatttctc tcgatgataa      1980
     ggttgtacca gtcatacagc atgcgcgtcg gccgccaata gctttgttga accgagttga      2040
     agaaaagttg acaagtctcg aaaaaatgga catcatcgaa ccggtgtctg aattcagtcc      2100
     atgggtatcg ccactagtcg ttatagttaa agataatggc gatttacgat tgtgcgttga      2160
     tatgcgtcaa gccaatcgag cgatccaacg agaatgctat atgatgccaa catttgaaga      2220
     ttttcttcca cagttgaacg aagcgcgatt ttttacccgc ctagacatta aagaagcatt      2280
     tcaccagttg gagcttgacg aatcgtcgcg gcatataaca acgttcatta cccataaagg      2340
     gttgtttcgg tacaaacgtt taatgttcgg gatgtcttgc gctcccgagt tattccaacg      2400
     agtactggaa cagatactag cttgttgcga aaacgttgtc aactatctcg atgacatcct      2460
     tatttttggg agcactttag aagaacacaa tgcagcattg gaacgggtgt tgtcgacctt      2520
     gaaagagaaa aacgtactgt taaatcacaa gaagtgtcag tttgcggtta cagaagtgga      2580
     attcgttggg catcatctgt cgtccgaagg tattcggcca ctcgaaaata aattgagcac      2640
     gttgcaatct tttcgaccac cagaaaatgt cgaagaactt aggagtttcc tcggactagc      2700
     caattttgtg ggacgtttct taccagactt aggtacagtg acagctccta tgagaggcct      2760
     acttcgttct aatacaaggt ttgaatgggg acaacaccat caggagtcgt tcgaagcatt      2820
     gaagagtctc atctccaacg tcaaaacgtt aagctacttc gacaactctc tgaggacacg      2880
     attgatcgta gatgcctctc catttgcgct tgggtgtgta ctagtccaat tcaaaagcga      2940
     tcatgatgac tctgaacctc gaataatctc ctatgccagt aagtgtttgt cagattcaga      3000
     aaaagaggta ttgtcaaacc gaaaaagaag ccctcgctat agtgtgggct gtagagcgat      3060
     tttcggtata cctgatagga cgtgatttcg aactggagac cgaccataag gcacttgaaa      3120
     ccatattttc cccaacgtcg aagccatgcg cccgtataga aaggtgggtt cttcgtcttc      3180
     aatcgttcac cttcaatgtg aagtacagga aaggctccac aaacatcgca gatccattca      3240
     gccgattagt acagaacgcc gtaaacgaag aatttgatgg tgataacaac tttctcgtac      3300
     tcaatatcgt gagttcagcc gctattgata cgaatgagat tgaggacgtc tcacaaaacg      3360
     atcacgaatt tggattgcta cgtgattgtt tgcagacaga tgtatggaaa cattcggagg      3420
     taaaaccgta cgaggtgttc aaacatgagt tagggttcgt aggagatgtt ctcgtcaggg      3480
     gtaccaaact cgtagtgcct aagcaattac gaaagagaat gatggatcta gcccacgaag      3540
     gacaccctgg tgaaacagtg atgaaaagga gattgaggga acgtgtttgg tggccaggga      3600
     tcgataagga ggttgtccaa tatgtccaaa ggtgtgaagg gtgtcgacta gttagtttgc      3660
     ctgaaagacc agaacctatg cagcgacggc aattgccatc gaatccatgg atcgacgtgg      3720
     caattgatta ccttggaccg atgccttcag gggaatatct gcttgtcatc atagattatt      3780
     acagtagata taaagaagtc gagataatga cacgcatcac agcaaaggat actatattca      3840
     gacttgatcg aattttcact cgtttaggct accctgtcac aataacactc gataacgcgc      3900
     ggcaattcgc ttcggatgaa tttgatcaat actgcaaagc acgtggaatc acacttaatt      3960
     tcacgacacc atattggccg caggaaaacg gattggtcga aagacaaaat cgttccttgc      4020
     tgaagaggct acaaattagt catggattga aaagagattg gaaagccgat ctacaggatt      4080
     atctaatgat gtattacaca tctccccact ccattacggg caaaactcct acggaaatga      4140
     tgtgtgggcg taccattcga tcaaaaattc catctatttc agatcttcaa cattgtccac      4200
     ggttctctga tgtagccgac agagatcgca ttctcaaaga gaaaggaagg gaaacggcgg      4260
     ataatgcacg acactccaag caatccaatt tagagacagg ggattcagtc ttgatgaaaa      4320
     atgtattgcc aggtaataag ctcacttcta actttgctgc caacgaatat accgtagtgg      4380
     ataagaaagg ttcccgtgtg acagtggaag atagcacatc aggaaaaacg tatcaacgga      4440
     attcgtcgca ccttaagaag gtgataaaag caactgaggt cccgaaagag caacagctga      4500
     ccgaaaatta tgtgcgtcgt catatggata cgatgttgcc gcagacagaa cagaaacagc      4560
     ttcgtttcta tccaggacta ccagatacct tcagagattt tactatgtaa gtttggacta      4620
     ccgatctata agagaaaagg gga                                              4643
//
ID   Gypsy-66_AA-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   supercont1.238;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_AA_;
KW   Gypsy-66_AA-I; Gypsy-66_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-178
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.238; Positions 1608062 1607885.
XX
SQ   Sequence 178 BP; 55 A; 36 C; 42 G; 45 T; 0 other;
     tgtagtaatg acatacattg agccacccct cgacagagcg agtgaagggt gttggtaaca        60
     cggtgagtta gacgacaagt gagtacatta gagtgcacat gtgtgaccgc attcggtaat       120
     aaactttgat acgatcttac gccgataatc gatatctaat gatctccgaa ttaccaca         178
//
ID   Gypsy-66_AnFu-I repbase;    DNA;    INV; 4700 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4700
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2950-2950 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..4687
FT                 /product="Gypsy-66_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTSPGTSAADEQRRLSQQWPTDIDAATAQHHHLPPAQ
FT                 SINVPAAQNGSFPPSQTAAQTPLLSFINAASSASDGNSMLQVLQQLQQQMA
FT                 QQQQQMAQQQQSIAQLLKQQPQVHPQPAIISNPESISAGIAKQINEFRFEP
FT                 EPGITFEAWYSRYEGLLTKDAAQLDEAARVRLLLRKLGPMEHERLINFILP
FT                 SLPHDFSFDAILDKLKQLFGKSESLLSRRFKCFNVTRPKSEDMLAYASRVN
FT                 RACIDFELGKLTEDQLKCLVFVCGLREEEDTDIRTRLLARIEDKRDMSLDQ
FT                 LAAECKRLDTIKKQGAMITRPTEQVLAVKSGEQQQSAAMPHQQPFQQRSTF
FT                 SARGRRTQQNNENVSFAKPKNPCWLCGALHWMRECTFTNHTCTDCGRTGHR
FT                 DGFCNTANRRRVKRETIYNRVVTVNVCRVKQKRKYVNALINGVTTQLQLDT
FT                 GSDITIINQNLWERLGKPRLRKPTVRARSAAGSNLQLEGEFEADISIGSTS
FT                 RQATVRVIRADLLLLGADLVDLFDLGSVPMNTFCNRVSADSVSKSLEGKFP
FT                 AVFTGVGLCTKACIKLQLKPDARPVFRPKRPVAYAVLESVDKELDRLEKLK
FT                 IISPVDYSEWAAPIVIVRKSNGNLRICGDYSTGLNAALLPYEYPLPLPDDI
FT                 FAKLAGCKLFSKIDLSDAFLQVEIDSQYRSLLTINTHRGLYHYNRLPPGIK
FT                 IAPAAFQQLIDTMLAGLSGSSGYMDDVVVGGKTEEEHDENLERLLRRIQEY
FT                 GFTVRAEKCAFRTDQIEYLGFIIDRQGLRPNPTKIEVIKNLPTPTNISEVR
FT                 SFLGAINYYGKFLPRMRDLRYPLDKLLTNSNDFVWSAECETAFKNFKALLC
FT                 SPLFLTHYDPNAEIIVAADASSVGIGATLSHRFSDGSIKVVQHASRALTKS
FT                 EQGYSQIDREGLAIVFAVKKFHKMIYGRQFRLQTDHRPLLRIFGSKKGIPV
FT                 YTANRLQRFALTLQLYDFDIEYVSTEKFGNADILSRLIKGQAKLDEDYVIA
FT                 CINLENDIRALAINALSAYPLSFRDVEHETMNDTTLKKVLRYLREGWPQNS
FT                 SFSGELARFHARQESLSEIEGCILFGERVVIPRILQQRCLAQLHLGHPGIQ
FT                 RMKALARSHIYWPLIDEDIKEIVLTCQACQAAAKSPVHSTPVSWPDASAPW
FT                 QRVHIDYAGPINGDYFLLIIDAFSKWPEIVKTSSTTSASTIAVLRSIFARF
FT                 GLPITIVSDNGTQFTSAEFAEFCSRNGIEHKTIPPFHPQSNGQAERFVDTF
FT                 KRALKKITFDISSPQHALDIFLQTYRSTPNPQLHHSTPASVMFGRNIRTCL
FT                 ELLHPIKKKEANIQNEQEREFSPGHFVFAKIYSRNTWKWTPGVIIKRRGNV
FT                 LYDVSTTERGVIKSHINQLRRRMDDNQQHPQRRATTFNTLLDAWSLLEPFE
FT                 AESSTVEQPPVPSRSSLSSSVPSQPVTSSTTTTTSQPASFTIAESKPCFNT
FT                 ADPNSNPILTKEPTTSASSLLRPMQAQPVLPPRRSSRVRRVPRRLHPYQTS
FT                 "
XX
SQ   Sequence 4700 BP; 1382 A; 1135 C; 1066 G; 1117 T; 0 other;
     gtggcgacga ggattacaag ttacagtgaa agcgtgaacc aaataataat aaatctagtc        60
     atagggacaa gcgacataca gtggaacaca gtgaaacgcg tacgtacaca ttagcaaaat       120
     tacgcgcaaa cgacggagaa tgaccagccc gggaacatcc gctgcagacg agcagcgacg       180
     tttatctcag cagtggccaa ccgatataga cgccgccact gcacagcacc accacctgcc       240
     acccgcgcag agcatcaacg tgccagcagc acaaaatgga agctttccgc catctcaaac       300
     tgcagctcag acgccattgc tctcattcat caatgcggcg tcatctgcca gcgacggaaa       360
     ttccatgctc caagtcctgc aacaactcca gcagcaaatg gcacaacagc agcagcaaat       420
     ggctcagcaa cagcaatcta tagcccagct gttgaaacag caaccccagg ttcatccgca       480
     acccgcaata atcagcaatc cagagtcgat aagtgccggc atagcgaaac aaatcaacga       540
     gtttcgattc gaacccgaac ctggtataac gtttgaggcg tggtactcgc gttacgaggg       600
     tttgctcacc aaggatgccg ctcaactcga cgaagcagcc agagttagat tgttactgcg       660
     taagttaggt cctatggagc acgaaagatt aatcaatttc attttgccta gcttgccaca       720
     tgatttttcg ttcgacgcca tcttggataa actgaagcag cttttcggca aatcggaatc       780
     actccttagc agacgtttca agtgtttcaa cgttacaaga ccgaaatcgg aagacatgct       840
     agcttatgca tctcgagtaa atcgtgcctg cattgatttc gagcttggga aattgacgga       900
     ggatcaactg aaatgtttag ttttcgtttg tggacttaga gaagaagaag atacagatat       960
     ccgcacccga ctcctggctc gcatcgaaga caaacgcgac atgtctctag accagttggc      1020
     tgccgaatgt aagcgtttgg ataccatcaa aaaacaaggt gccatgatca cacgtccgac      1080
     tgaacaggtc ctagcggtga aaagcggaga acagcaacag tctgcagcga tgccacatca      1140
     gcagccattc caacaacgct ccacatttag cgcacgcgga agacgcacac agcaaaacaa      1200
     tgagaacgtg tcgttcgcca aaccaaaaaa tccctgctgg ctgtgcggtg cgctacattg      1260
     gatgagggaa tgcacgttta caaaccatac atgcacagac tgtggtcgta ccggacatcg      1320
     tgatggattt tgcaacacgg ctaaccgacg tcgtgtcaaa agagaaacta tctacaatcg      1380
     agttgtaaca gtaaatgtat gccgggttaa acagaaacgg aaatatgtca acgcacttat      1440
     aaacggcgta actacgcaac tacaactaga cactgggtcc gacattacca tcataaacca      1500
     gaatctatgg gaacgtctgg ggaaaccacg gttacgaaaa ccaacagtaa gagcaagatc      1560
     agcagcaggt agcaatctcc aattagaagg tgaattcgaa gcagatatca gtatcgggag      1620
     tacatctcgt caggcaacag ttcgggtcat cagagctgac ctgttattgc tgggagccga      1680
     tctagtggac ctctttgacc ttgggtcagt accaatgaac acattttgca atcgcgtctc      1740
     tgcagattct gtttccaaaa gtctagaagg caaatttcct gccgttttta ctggagttgg      1800
     attgtgtact aaggcctgca ttaaacttca attgaagccg gatgctcggc cggttttccg      1860
     tccaaaaaga ccggtcgctt acgcggtgct agaatctgtc gacaaggagc tagatcgatt      1920
     ggaaaaattg aaaataatct caccggtgga ttactcggag tgggccgccc ccatcgttat      1980
     cgttcgaaag agcaatggta atttacgtat atgcggagat tactcaacag ggttaaacgc      2040
     agctcttctc ccttatgaat atccgcttcc gttgcctgat gacattttcg ctaagttggc      2100
     tggatgcaaa ttgtttagca agattgacct atctgatgcg tttttgcagg tggagattga      2160
     ttctcaatac cggtcgttac tcaccattaa cacgcaccga ggattgtatc attataaccg      2220
     cctgccaccg ggtattaaaa ttgcacctgc tgccttccaa caactaatag atacaatgct      2280
     ggccggtctt agtggttcat ctggctacat ggacgacgta gttgtaggag gaaaaacaga      2340
     agaagagcat gatgaaaacc ttgaaaggct cctgcgtcgc atacaggagt acggattcac      2400
     cgtccgcgct gaaaagtgcg cctttaggac agatcaaatt gaatacttgg gattcatcat      2460
     cgatcgtcaa ggtctccgtc ctaatcctac caaaatagaa gtcattaaga atttgccaac      2520
     accaacaaac atcagcgagg tccgctcgtt tttaggagct attaattact atggtaaatt      2580
     tcttccaaga atgcgagacc ttcggtaccc attggataaa cttctgacaa atagcaacga      2640
     ctttgtatgg tcagccgagt gtgagaccgc gttcaaaaat ttcaaagcat tgctctgttc      2700
     tcccttattt ctcacacatt acgacccgaa tgcagaaatt atcgtagctg cggatgcatc      2760
     atctgtcggc ataggcgcca ctttaagcca cagattctca gacggttcga taaaagtggt      2820
     acagcatgca tccagagcgt taacaaagtc tgaacaaggt tatagtcaaa ttgatcgcga      2880
     aggactggcg atcgtgtttg cagtgaagaa gtttcataaa atgatctatg gccgtcaatt      2940
     tcgtctccaa actgatcatc gacctctact gagaatattt ggctcaaaaa agggaatacc      3000
     ggtctatact gcaaataggc tacagcgatt cgcgctaacc ttacaattgt atgattttga      3060
     tattgaatac gtttcaaccg aaaaattcgg gaatgctgac atactctccc gtctgataaa      3120
     ggggcaggcc aagctagatg aggactacgt gattgcctgt attaatctgg agaatgatat      3180
     aagagcattg gccataaatg cactgtctgc atacccatta agttttagag atgttgagca      3240
     tgaaacaatg aatgatacaa cactaaaaaa ggtacttagg tatctcagag aagggtggcc      3300
     acagaacagc tccttcagtg gtgaacttgc taggtttcac gccagacagg aaagtttgtc      3360
     ggagatcgag ggctgcatcc tgtttggaga gagagtggtg ataccgagaa ttctacagca      3420
     acgatgtctt gcgcagctgc acctcgggca ccctggtata cagagaatga aggcgttggc      3480
     gcgaagtcac atctattggc cactcatcga tgaagacatc aaagaaatcg tcctaacctg      3540
     tcaggcatgt caagcagcag cgaaatcacc agtacattca acaccagtat catggcccga      3600
     tgcctcagca ccatggcagc gcgttcacat agactatgcc gggcccatca acggagatta      3660
     ttttctactg attattgatg cattttctaa gtggccggag attgtaaaaa catcgagtac      3720
     tacgtcagcg tctactatcg cggttctaag atcgatattc gcacgtttcg ggttgccgat      3780
     tactatagtc agtgacaacg gtacgcagtt cacaagcgcg gagtttgcag agttttgttc      3840
     gcgaaacgga attgagcaca agacgattcc tccctttcac cctcagtcaa acggtcaggc      3900
     tgagcggttt gtcgatactt tcaaaagggc cctcaaaaag attacgtttg atatttcatc      3960
     accgcagcat gcgttggata tattcctgca gacataccga tcaacgccca atccgcaact      4020
     acatcacagt acaccagctt ccgttatgtt tggtagaaac attcgcacat gtctcgaatt      4080
     attacacccg attaagaaga aagaggccaa tatccaaaac gagcaagaga gggagttttc      4140
     gccaggacat ttcgtttttg ctaaaatata ctccagaaac acgtggaaat ggacaccggg      4200
     ggttataata aaacggcgtg gtaatgtttt gtacgacgtt agcaccactg aacgcggagt      4260
     tattaaatca catattaatc agctgcgacg acggatggac gataatcaac aacatcccca      4320
     gcggagagcc acaacgttta acacactttt ggatgcttgg agtttgttag agccatttga      4380
     agcagagtca agcactgtag agcagcctcc ggtaccatcg cgaagctcac tttcctcatc      4440
     cgtgccatct caacccgtga cgtcttctac aacgacgaca acttcacagc ctgcatcttt      4500
     tacgatagcc gagtcgaagc cttgttttaa cacagctgac cctaattcca accccatttt      4560
     aactaaggaa ccaacgacat cggcatcgtc gctccttcgt cccatgcagg cccaaccggt      4620
     acttccgcct cgccgctctt ctcgtgtgag aagagttccc cgaaggcttc atccgtacca      4680
     aacatcttaa aagggggaga                                                  4700
//
ID   Gypsy-66_AnFu-LTR repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-331
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2878-2878 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 331 BP; 79 A; 80 C; 85 G; 87 T; 0 other;
     tgttgtggac acgtcttgtg tcacgcgaca tcgtcatctg ggctgttcgc gacgtgcgac        60
     atccttagat gacaagagat gtcatcccag cgatcccacg tgctaggctc gtgggcgcaa       120
     ccattttccc ccattttgca tccgagcaag gacgttggca cgggacggcc gtacgatcac       180
     cgggcattcg tgttagtacc gtacgagcat gcggagctcg cgtcgcgtga aggttctcgt       240
     attaaaataa ataaagatag ttatttgtat atgttatatt tgtgttccgt aactacccgt       300
     gaacattatc acagtgcgtg agaacacaaa a                                      331
//
ID   Gypsy-66_CQ-I repbase;    DNA;    INV; 6893 BP.
XX
AC   AAWU01038782;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_CQ_;
KW   Gypsy-66_CQ-LTR; Gypsy-66_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6893
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 511-511 (2011).
XX
DR   Genome; AAWU01038782; Positions    4788   11680.
XX
CC   Positions [4662-5138] - Integrase core
CC   'AAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..2400
FT                 /product="Gypsy-66_CQ-I_1p"
FT                 /translation="MSHELDLIYRSMNVKHLLDDEVEHELMIRQVNFSSGD
FT                 SRESKVRLLRVTLRNQRDSNSFKVILLDENMLEVEFCQIKEKVGNIRKQLE
FT                 SGKVKKEDLPPYKTRLVHLIFRLIRLKRVKFNTCGLDQNAVRLYNEYFTVW
FT                 SNNPEKAREAARRLELEISKIGAIDELITESDDTEDSGEGIEAVSAEGESS
FT                 ENEDDDLPAKKKKTSTPKKILKNKQTGPIDTQKIVEIVVDQVSKHFQEQFR
FT                 NLMLDDRFMGGIVSGKKSGKTKDRKGKSQQKANGKSRVEKPRKGERRSKKK
FT                 QQSTTESEETVSSEGDDSLDSSDDSEPEPRRERKLRRPRPVSEWNLRYDGK
FT                 DDGKRLNKFIAEVEGMAEAENLSKRALFKEAIHLFSGEVRTWYMEGKKNRD
FT                 FTNWKELLVELKVEFQPPDLDYHYEQQATLRRQRRSEKFSEYYNAMKEIFS
FT                 FMARQPSEDRKFDIVYRNLRADYRSALLVKEIKTLRLLKVWGRKLDAANWF
FT                 LYRGKETGSAQKSSQVNEVYQSSSQKFDKPQPKPDWKPKGTGNKPGWSDNR
FT                 KQSDQPRKPTENKNEKSSQPGPTKTQQQPGNSRATLEERVVRHRVPDSTVC
FT                 YNCRGKYHHFKACLKERELFCAVCGFYDFTHENCPFCAKNGRKSA"
FT   CDS           2526..5537
FT                 /product="Gypsy-66_CQ-I_2p"
FT                 /translation="MGLKVTGLLDSGAQVSILGAEGDHLLRKLNLREFGSE
FT                 RKLFSAGGDELVVRGYVHLPITFNGTTRLVTTLISPTLKRKMILGMNFWRQ
FT                 FGIEPTVTDAQVEEIEEAQLEEEPLSAAQQAQLAKIKKDFKAFEEGQTLET
FT                 TPLITHKIEFLEEYEHADPVRLNPYPWSPEVQKHVNSELDKWIEAGVVERS
FT                 TSDWALLIVPVVKKSEDDTGETQMKVRMCLDARKLNERTRRDAYPLPHQDR
FT                 ILGRLGKSRFLSTIDLSKAFWQVPLDPESRKYTAFRVFGRGLFQFTRLPFG
FT                 LVNSPATLSRLMDRVLGYGELEPNVFVYLDDIVIANDTFEDHLRCLREVAK
FT                 RLKAANLSINVEKSKFCVPELPYLGFILSKEGVRPNPDKVEAIINFERPSS
FT                 VRSLRRFLGMVNYYRRFIEGFSDVTAPLTDLLKGKPKVVQWNAAAEGAFIE
FT                 LKQRLISAPILANPNFELPFTVQTDASDSAIAGVLTQEHDGVEHVIAYFSR
FT                 KLTTPQRSWKAAEKEGLAALEAIEKFRPYIEGTQFTLITDSSALSFIMNTK
FT                 WKSSSKLSRWSMLLQQYAMTVRHRKGSENIVPDALSRSVEAVDVGSREDWY
FT                 ADLFRKVAESPDDYVDYKIENGKLYRFISSPSDVMDYTFEWKLCVPTELRK
FT                 SVLKEEHDESMHPGYEKTIQRLKMRYLWPRMAVQCKKYIKACSVCKQSKPS
FT                 TVGSVPVMGNQRITNKPFQILALDFIQNLPRSKNGKCHLLVLLDMFSKWTV
FT                 LVPLRKIEAKEVCGIVEDQWMRRFGTPEIIISDNATTFLGKEFQALLRRRG
FT                 IQHWPNARHHSQANPVERANRTINACLRTYMKEDQRVWDSRIAEVEEMMNT
FT                 TVHSSTGLTPYRILYGHEKATQGEQHRIERDERELSMDERDESRKRMNEKV
FT                 FKIVEDNLKKSYEKNVKNYNLRHKRFAPTYSVGQRVLKRNFKLSSAADRYN
FT                 AKYGPVYVPCVVVARRGTSSYELADETGKNIGVFSAADLRPDDTDVHSQ"
XX
SQ   Sequence 6893 BP; 2071 A; 1328 C; 1841 G; 1653 T; 0 other;
     attggcgccc aaacaaaaat cgcaaaaacc aacgaggatc gattagagat tttggcaatt        60
     tttcaacccg agtgggagga gaataccaaa caaatttgcg acttgttttg gtaggatccg       120
     ttgctagact ttaccttagt gggcctagtg agaaataatt gtgaatttgt aagttgctag       180
     tggtggtatt tgaactcgat aaaaatattt ctagcagtta gaggtggatt aaacgagcat       240
     catagacatc tggttaaaat ttgagaatgt aaagccgaag aaacttaaaa taaaaggtcc       300
     tgagcgatat taaaaataaa actacaagtc aacagaattt caatttaatt tatttctttt       360
     gtatttgtta gtgtgaacat attttgtatt ttaatttagt tgatttatac tgaattacat       420
     tcagtttaat tgattttatt atttattttg tgattgttta aaattatcaa gatgagtcac       480
     gaacttgatc taatttatcg ttccatgaac gtaaaacatc ttcttgatga tgaggttgag       540
     catgaattga tgattcgtca ggtcaatttc tcaagtggtg attcgagaga aagcaaggtg       600
     cgtttgttac gcgtcacttt gaggaatcag agagattcaa acagttttaa agtgattttg       660
     ttagacgaaa acatgctaga ggtcgagttt tgtcaaatca aagagaaggt tgggaatatt       720
     cgaaaacaac tggaatcagg caaagtaaaa aaagaagatc ttccaccgta caagactagg       780
     ctggtacact tgattttccg gttaatacgc ttaaaacgag taaaattcaa tacgtgtggc       840
     ctggatcaaa acgccgtgag gttgtacaac gagtacttca cggtgtggtc taacaatcca       900
     gaaaaggcca gggaagctgc aaggcgattg gagttggaga ttagtaagat cggtgccata       960
     gatgagttga ttacggagtc agacgacaca gaggattcag gagagggaat agaggcagtg      1020
     tcagcagaag gcgaatcgtc agagaatgag gacgatgatt tgccagcaaa gaagaagaaa      1080
     acgagtacac cgaagaagat tttgaaaaat aagcaaactg gtccaataga cacccaaaag      1140
     attgtggaaa ttgtcgtgga ccaggttagc aaacatttcc aggagcagtt cagaaatctg      1200
     atgttggatg atcgctttat gggtggcatt gtaagcggaa agaagtctgg gaaaacaaag      1260
     gataggaagg gaaaatccca gcaaaaggca aacggaaagt caagggtgga aaagccgcgt      1320
     aaaggtgaaa gaagatcaaa gaagaagcag caatcgacta ctgaatctga ggagacggta      1380
     tctagtgaag gagatgactc gctagacagt tcggatgatt cggagcccga accaaggcgt      1440
     gaaaggaagt tgcgtagacc acgtccggta tcagagtgga atcttcgcta cgatggcaag      1500
     gatgatggaa aacgtttgaa caagttcatt gctgaggttg aaggtatggc agaagcggaa      1560
     aacctaagca agagagcgtt gtttaaagag gccattcacc tgttctcagg cgaagttcgc      1620
     acctggtata tggaaggcaa gaagaacagg gatttcacga attggaagga gttattggta      1680
     gaactaaaag tcgagtttca acctccagac ctagattacc attacgaaca gcaagccaca      1740
     ttgagaagac aacgcagatc agagaagttt tcggagtatt acaacgcgat gaaagagatt      1800
     ttcagcttca tggcaaggca gccatcagaa gatcggaagt tcgacatcgt gtaccggaac      1860
     ttacgcgcag attatcgtag cgctcttctt gtgaaagaaa taaaaacgtt acgattgttg      1920
     aaggtttggg gacgcaagct ggacgctgcc aactggttcc tgtatcgcgg taaagagacg      1980
     ggatcggcgc aaaagtcgtc acaggtgaac gaagtctacc aaagctcgtc acagaagttc      2040
     gacaaaccgc agccgaagcc ggattggaag ccgaagggta ccggaaacaa accaggttgg      2100
     agtgacaaca ggaagcagtc agaccaaccg aggaaaccga cagagaacaa gaatgagaag      2160
     tcttcacaac ctggacccac taaaacccaa caacaaccag gaaatagtag agcaacactg      2220
     gaagagcgtg tggttcgaca tcgagtaccg gacagtacgg tgtgttacaa ctgtcgcggg      2280
     aagtatcatc acttcaaagc gtgcttgaag gagcgggaac tgttttgtgc ggtgtgtgga      2340
     ttttatgatt ttacacacga gaactgcccg ttttgtgcaa aaaacggtcg caagtcggcg      2400
     taggaggtcg tcgccgagtg cgattcagaa gacctcagac agtttttatc ccagctaacg      2460
     cagaagtaga agaattgata gtagaggtgg agggtgacaa cagaccgttt gtgaccgttg      2520
     atgtgatggg gttgaaggtg accggactat tagatagtgg agctcaagtt tcgatacttg      2580
     gagcggaagg agaccacctg ctgaggaagc tgaatcttcg ggaatttggt tccgagagga      2640
     agcttttctc tgcaggcggc gatgagttag tagtacgagg atatgtacac ctaccaatca      2700
     cattcaacgg cacgacgagg ctagtcacca ctcttatttc acccactctc aaaagaaaaa      2760
     tgattttggg aatgaatttc tggcgtcagt ttgggataga accaacagtt actgatgctc      2820
     aagtagaaga gatcgaagaa gcacagctgg aagaagaacc gttgtcggcc gcacagcagg      2880
     cccaactggc aaaaatcaaa aaggatttta aggcttttga agaaggacaa actcttgaga      2940
     ctacaccgct gattactcac aagatagagt tcctggagga gtacgagcat gctgacccgg      3000
     ttcggctcaa cccgtatccg tggtcaccgg aagtgcagaa gcatgttaac agtgaactag      3060
     ataagtggat tgaagcgggg gtggtggaga gatcgaccag cgactgggca ctactcatcg      3120
     tgccggtcgt gaagaagagc gaggatgaca ctggagagac acagatgaaa gtgaggatgt      3180
     gtctggacgc gcgcaagctg aacgaaagga ctcggaggga tgcctaccct ctacctcacc      3240
     aggatcgcat acttggccga ttagggaagt cacggttctt atccactatc gacctttcaa      3300
     aggcattttg gcaagttccg ttagacccgg agtcgcgcaa gtatacagct ttccgggtgt      3360
     tcggcagagg gttgttccag tttacccgac ttccatttgg tcttgtcaat agtcctgcga      3420
     cgttgtccag gcttatggac agggtcttgg ggtacggtga actggaaccg aacgtgttcg      3480
     tctatttaga cgatatcgtc atagcaaacg acacgttcga ggatcacctc cgatgcctca      3540
     gagaagtggc aaaacggttg aaggcagcga atctgtccat aaacgtagaa aaatcgaagt      3600
     tttgcgttcc agagcttcct tatttaggct tcattttgtc taaggaagga gtccggccga      3660
     atcccgacaa agttgaggcg ataataaact ttgaacggcc gtcatctgtg cggtcattgc      3720
     gaaggttttt aggcatggtg aattattacc ggcggttcat agaagggttc agcgatgtaa      3780
     ctgcgccctt aacagatctg cttaaaggga aaccaaaggt ggttcaatgg aatgcggcgg      3840
     cagaaggcgc gttcatcgag ttgaagcagc ggctaatctc tgcgccgatc ttggccaacc      3900
     cgaacttcga gctacctttc accgtgcaga ccgacgccag tgacagcgcg atagcaggtg      3960
     tattgacgca ggagcacgac ggagttgagc acgtgatagc gtacttctcc cggaagctga      4020
     ccactccgca acggtcgtgg aaagcagccg agaaggaggg cctcgcggca ctggaagcga      4080
     ttgagaagtt ccggccgtac atcgagggaa cgcagttcac gctgattaca gactcgtcgg      4140
     cgttgtcatt cataatgaac acaaaatgga aatcgtcatc gaagttgagc aggtggagta      4200
     tgctgttgca gcagtacgca atgaccgttc gtcaccgcaa aggttcagag aacatagttc      4260
     cggacgccct ttcgcggtcg gtcgaagctg ttgacgtagg tagccgggaa gattggtacg      4320
     ctgacttgtt tcgcaaagtg gcggaatctc cggatgacta cgtggactac aagatcgaga      4380
     atgggaagct gtatcggttt atctcatcac catcagacgt tatggattat acgttcgagt      4440
     ggaaactgtg tgtgcccacc gaactgcgta agtcggttct taaagaggaa cacgatgaga      4500
     gtatgcatcc aggctacgaa aagactatcc agcggctgaa gatgagatat ttgtggccga      4560
     gaatggcggt tcagtgcaag aagtacatca aagcgtgttc ggtttgtaaa cagagtaaac      4620
     cgtccacagt aggctccgta ccggtaatgg gaaaccagcg catcacaaac aaaccattcc      4680
     agatattagc acttgatttt atccaaaatc tgcctcggag caagaacggg aaatgccatt      4740
     tgttagtcct tttggacatg ttttcaaaat ggaccgttct tgtcccattg aggaagattg      4800
     aggcgaagga ggtgtgcggt attgtggagg atcagtggat gagacggttt ggaaccccag      4860
     agattatcat ctcagacaat gcgacgactt tcttgggaaa agagttccaa gcactgttgc      4920
     gtaggagagg gattcagcac tggccaaatg cgaggcatca tagccaggcc aacccggtcg      4980
     aacgagcgaa tcggacgatc aacgcgtgct tgaggacgta catgaaagaa gatcagcggg      5040
     tctgggacag cagaatagca gaagtagagg agatgatgaa cacgacggtt cattcctcca      5100
     ccggtttaac gccctaccgc atcctgtacg gccatgagaa ggcgacgcaa ggagagcagc      5160
     atcggataga aagggacgaa agggaacttt ctatggacga gcgggatgaa agccgaaaga      5220
     ggatgaacga gaaggtgttc aaaatcgtcg aggataattt aaagaagagc tacgagaaga      5280
     atgtgaagaa ctacaatctc aggcataaac ggtttgcacc aacttacagt gtaggccaac      5340
     gcgtgcttaa gcggaatttc aagctgtcct cggctgcgga ccggtataac gcgaagtacg      5400
     gtcccgtcta cgttccgtgt gttgtcgtcg cacggcgtgg aaccagttcc tacgagttgg      5460
     ctgatgaaac cggcaagaac atcggggtgt tttccgcggc ggatcttcgt cccgatgaca      5520
     cagatgtcca ttcacagtaa tcaactcact aaaaaggaaa gaaaaggtgt aaggacctaa      5580
     ctcaatgaca cagcaacgaa ctcaaggtac cagagtatcg gtgtccccta taacatgttc      5640
     atggcagatg cgtgggcgtg ttggtcatca ttgcgacaaa gccgaacgaa cacttgatgg      5700
     agcgaattaa gatcctcagg tggtgatcac gttgcggcga tgggcgtagc gaccaggctg      5760
     gtgtacgatc ttaatccacc ggtcatgtaa acagcactag tggtgaagag tggtcatctc      5820
     aaaacagcag agacgctgga gatcgagtga tcgttcgtca cgagccacag tgtggtgaat      5880
     tcagcgttca gcgtagagtg ataaggccag aatgatcggg tgttgccata acagcgagaa      5940
     gtgagaagat tcctccttcg ctggtgagat ggtgatcgcg agatctggaa gatgagaaga      6000
     ttgatgagta attgcgcatg tatacagtcc ggactgatga agaatagaga tctctgtaga      6060
     gtagtatttg tagtagtgat agattagaat aataaattgt aggtttttag aaagaagaag      6120
     tagaagatcg tggaacgcgt cgtacttacc atccatacag ttgaaatttc ttcttttcac      6180
     gttgagctga tgatcgtaac tttggtagga gagtcccgta ggtgtaaatg gaagaaaaag      6240
     cagctttcaa ggcgccgaaa gcttaacttc gcgaacagga gctcacttgt agctcacacc      6300
     tttgtagatc aggcggccac ctggtcggac aacctgaaaa ggaaaccgtt cactaagctt      6360
     aacgtgatag ttgatacata atgatctact tatcttgaac acttcttgag aaagaccacc      6420
     tattttaatc cgtttagtag aaattttcac agtttttttt attttttttt ttacactttt      6480
     gtaaattaat cggcaacgta ttaccgttcg tgaccgcgtg tgagaagcga ctgaaagttg      6540
     gctctttctc ttactgtgag taagccagaa atgagattta acgaaagttg atgtagtaga      6600
     tttaaattca ccattggtgt aattcggcat gcatatactc aggctaaaaa tcacacgtgg      6660
     ccaattatgg catatttcgt gaagaaatgt cgcttttagt tgccagattt taatgtgttt      6720
     atgatgtcta tatgttgtaa tttgttttaa ctgctgcgcg agacgaatta tgtgtataca      6780
     tgtttgtaaa tgttctactt aaccacaaaa tagcttccaa tttgcaaata cttttccaaa      6840
     ggcttacata attgaacctg accagttcaa ttattaacta aggtggggga tag             6893
//
ID   Gypsy-66_CQ-LTR repbase;    DNA;    INV; 1152 BP.
XX
AC   AAWU01038782;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_CQ_;
KW   Gypsy-66_CQ-I; Gypsy-66_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1152
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 512-512 (2011).
XX
DR   Genome; AAWU01038782; Positions    3636    4787.
XX
SQ   Sequence 1152 BP; 331 A; 288 C; 269 G; 264 T; 0 other;
     tgtaaccact cgttacaagt ccttcattct tcaacatcaa taaaccaaaa ataaatgcga        60
     acgttcacga ttcttagcta tggggttagt agggaattag ggaataaata aataaatgta       120
     atttagttag tagggttagt aaaaagggga aattaataaa taaaaacaca atttgttaac       180
     acactataac aacacacaaa ctgtgggaca aaccaacaac cagcgacagt attgtcttcg       240
     tcttaaaaca tcgcaaaggg ggtggtagac aacgcccaaa agtgatgggt gtcacgtgac       300
     gtaatgtcgt gtcaccgacc aaaaggcttg aagggacgag aattagaccg ccaacggtca       360
     cattctccca ggcaagtgag cgatctatac cgttagaaaa gtagagcgaa ggactagaag       420
     tgaaagtggt ggaaatttgt gcgagtgcac ctcctgtcgt tcaggacctt ttgtcctttg       480
     gcgtaaacgc cattttgcga gttaagcacg ccgcttgacc gccagatcgc tcgctcttcg       540
     gcccagtttg cgtaagcgcg gaggagccgg cttactgcgt ctaatcgtca aagatcatca       600
     gttgctctgg tccgtggacc ataatttcca aggagcacgc tcgggccctc gtggctctca       660
     ttccaaagga gcgtaaattc cccctctcgg tttggtcaac gtgggcaggt ccccgatcgg       720
     ccgatccagt caaggaggga aggcctggtc cctaagccgt gctctaccta ccatccaccc       780
     ccaccacgtc gagaaccagc accggtgctt cagcagcgaa cgcgagcgct cgcagccagc       840
     ggactggctg agtagcagat cgtcgtcgtc agcggaaaag cagcggtacg taccgagtcc       900
     cccacacaca catacactta caaatataca cttttgaacc gacttaaatt ctttaaataa       960
     atttcccctg ttgtctccca aaagaggagt ttcattcaac ctgtaacaca agaaaagtga      1020
     agttcccaaa attaagttcg cgtatctcct cgttggtgac tagcgcagcc gaccctgcga      1080
     ttaccgtgag tctgtgctgt gactagctaa ccgtaggcaa aaactaatgt gggtaagtcc      1140
     cctaaagttt ca                                                          1152
//
ID   Gypsy-66_DEl-I repbase;    DNA;    INV; 6074 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_DEl-I;
KW   Gypsy-66_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6074
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7030-7030 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6074 BP; 2407 A; 1036 C; 964 G; 1667 T; 0 other;
     ggcgcagccg tactcttacc tattattcca tattaagccg gacacaacat tataaaatgt        60
     atgtatgcat gtatgtattt gatttattaa ttccgagtga aaacacacag cataatggtg       120
     aaatttaata aaataaatgg aaggaagaac atacatgtat gtatgtgtgt atatatctgt       180
     gaagcggagt aaatgatttg cttattgtaa ttccgttatt ctgtgttttt gtacgaatat       240
     gttggaacaa tgcgtgaagc acacacagat aacgggatcg ttcgattcag tacgggcagt       300
     cgtcgaaaca tttatttttt tttttttgcc tgagtacagt tgtgtgtata cgtatgtata       360
     caacaaaaat caatgcatag agacgcgcaa aacaacaata tgtgctcaaa ccgatcgaac       420
     gtgtcgtcaa agatgtttga gacagttgca attagttctg tgtttcagtg cgactcacag       480
     actaagagca acaatatgtg ctcaaaccga tcgaacgtgt cgtcaaagat gtttgagaca       540
     gttgcagtta gttctgtgtt tcagtgcgac tcacagacta agagcaacaa tatgtagtca       600
     agccgatcga acgtgtcgtg gaagatgttt gagacagttg cagttagttc cgtgtttcag       660
     tgcgactcac agactaagag caacaatatg tgctcaagcc aatcaaacgt gtcgtgagga       720
     tgtttgagat agttgcagtt agttctgtgt ttcagtgcga ctcacagact aggggcaaat       780
     atacgttttc aaacctttta acgtgcagtt gatacatgtt cgaatgatat tagtatatat       840
     ttaggtgcaa cctaagtacc aaatgcaaca atatattaat atacgtattt ggtttgttac       900
     acgtaaaact gaaaaataaa atacatattt tatattaaca gataggagct accatgagag       960
     gagcaaaaaa ccatactcca aataccagga gtcaaactgg aatcaacacc atcgtatccg      1020
     agaatacaga ggccattgta acaagacaaa acgatcaatc atccactact tcttcatcag      1080
     aatacgtccc ttcgaatcaa ggagagcaaa atgctaatcc acttgatatc ctatcaacac      1140
     tgaaaatacc agacgcaatt cgttttttac ctgtatacga cggtaatcca aaaactttac      1200
     atgaatttat aaccaatgtg gaggaaattc tagcactgat tagcggcact agtaaaacgc      1260
     catatggtca gctgcttcta agatcgattc gaaataaaat cgaaggaaag gccagcgaag      1320
     gcatcatcga agcaggagcc agtcttgatt gggaagaaat taaagacgcc ctcatcttgc      1380
     attgcgcgga caagagagat gaacccactc ttatgttcga gctccacaat actgtgcagg      1440
     agggtctttc cttacgtcaa ctatataaca aagtctgtga gattaaatta gcattattta      1500
     gaatagcgga aaccacaaaa tcggagcaga ttgtggttaa gacaaaaaaa acattgtttg      1560
     ctgacatatg tctcaactca tttttagcag gcattagagg cccattagga gctacaataa      1620
     gatccatgaa accgaccaat ctccgagagg ccttcgaatg ggcgttgaaa gaaagagaaa      1680
     cttttttcgc tcaaaagaat ataaaaaaac cggatcaaaa acaggaatat ggatctcaac      1740
     aatattataa tagaagtata gaatataata gaggaaatga tgacagacgt agccataaac      1800
     gtagtagaga cggttctaac gatagaaacg gtaatagagg aaatgacgac agacgtaact      1860
     ataagcgtta tcgaaacgat tatgacaata ttgataataa ttacaaaaga aataatatgt      1920
     tagcaattat gccaaaagat aataactata acaataacaa tcaacagaaa caatccaata      1980
     gacaaaccac caactatcag tccagaaatt cgaatagtaa tgctaatcaa cacgcacaaa      2040
     tgcacaattt taatgaggcg gcaaattttc cacaagaagc ctcagacaac agaccggata      2100
     cctgataaat aaagacaagt caaaactacc atatattatg gtaaacaaga ttttcgataa      2160
     aactctcaag ttccttatag atactggtgc taccttttct tttattaacc ctaattatat      2220
     tgaaaaagaa aatcaaatta aattacatac accaatagtc attaagacag tactaaatca      2280
     attccaatta tataacaaga ctatgattcc attgtttagt gaattctccg atgtgtcaga      2340
     atactcattt cttttatttg attttcatcc atattttgat ggacttatcg ggatagatat      2400
     attgcaagaa ataaaagcta ttgtaaacat tccgttaaaa atacttgaaa caaaaacttc      2460
     aaaaataaat attgagctag aagagaaatc aaattctgat atatatacaa tagaagaaga      2520
     atcaaaaaag attattcatc taccagtaaa cgtaacaaat ggaatgttct tgtttgaaac      2580
     cacaactatt tccgaagaca ttgtcatatc aggtggactt tatactgccg aaaataatct      2640
     tagttatatg gaagttaata atttttcaag ccaggacaaa aaattctgct tagatacata      2700
     cttagaagta caaaactgta gagaacaaga ttattttgaa gtgaacttaa ttcaaaaaga      2760
     aaataacgaa acgacattcg ataatcaaga tttcaatact tatatacgaa ctcagcatct      2820
     taataatgag gaaattaccc aacttaaaaa actctgctta gaatttccga tgctgttttt      2880
     caaagacgga aataccttac ctttcactaa cttaataaag cacagaatta gaaccacaga      2940
     cgaaattccc attcacacta gaccctttcg ttatagtcaa aaagaaagac aagaaatgag      3000
     gaaacaaatc gataacctgc tggaacaaaa aataattagg catagttatt ctccatggag      3060
     tgctccaacg tttctggtat caaagaaaat ggacgcctca aatacaaaaa aatggcgatt      3120
     agtagtggat tatcgcaaat taaatgaaaa aactatcaaa gacaaatatc ctatgcccaa      3180
     catcaatgat gtgttagata gaattggcag ggctaaatac ttcacagcat tagatttagc      3240
     tagcgggtat caccaaatcg agatgcatcc gaaagatata aacaagacgg cattttccac      3300
     agaaggagga cactttgaat ttgtaagaat gccatttgga cttacaaatg ccccagccac      3360
     cttccaaagg gttatggata acgttttagc cgacctaaat ggcaaatgtt gtcttatata      3420
     tctagacgat ataataatat tctctgcatc tctacaggaa catattaacg atttaaaagc      3480
     agtctttaaa aaattaaata atgctaacct taaattgcaa cctgcaaagt ctgaatttat      3540
     gagaaaggaa attgagtatt taggtcacgt ggttacggac agaggaatta aaccaaatcc      3600
     aaaaaagatt agtgctataa aatcatttcc acttccaaag accagaaaac aaataaaatc      3660
     atttttaggt ctgctcggtt actatagaaa attcattaaa gattttgcta cgatcaccaa      3720
     acccttaaca caacaattaa aaggtaaaga ttcagtcaaa attggcaaag agttcttaaa      3780
     cgcatttgaa aattgtaaag acctattatg taatgatcca ttgttaaaat atccggactt      3840
     ttcaaaacct ttcactctta cgacagacgc aagtaatgtg gcaataggag cagtcctttc      3900
     tcaaggcaca tcgaacaatg aaaaaccagt atcatttgct agtcgcacac ttacagacac      3960
     agaattaaag tattcaacca tcgaaaaaga aatgttagcc attatatggg ctactaaata      4020
     tttccgtcct tatctatatg gccaaaagtt taaaattaac accgatcaca gaccactaac      4080
     gtggctaatg aattttaaag agcctaattc taaattggtt cggtggaaac tgcaacttct      4140
     agaatatgat tatgaaatct catataaaaa aggttctgaa aatgtagtag cagattcact      4200
     tagtcgcatt tcagcggaag tacacaccaa cagttctata aaaaataccc ttaataaaaa      4260
     gacaaacaca attttaaacg taaataaacc aattaacgaa tacaacatgc agattatatt      4320
     tagaattcat acagactctc aaataataac ctcaactctt ttcaaaaaaa aaataaggag      4380
     agtagtcacg gatagttcat ttgataataa aaaaataaga gaaacattta aaacaatatt      4440
     aaaaccaaat aaagtatacg ctatttttgc tgcagatgac attttcacca tcattcaaga      4500
     tgtattaaaa gaatatttct tacccacaaa tctttataaa attgtaagaa ctactacaat      4560
     actgaaagat gttgaaagta ttgcagaatt aatcacagaa atacaaaatt atcatataaa      4620
     caacaatcat agaggcgtag acgaaacggt agctcattta aagagacaaa tatattctcc      4680
     acaacttaaa aatcaaacgt cccgattaat taatagttgt gatatttgtc aaactttaaa      4740
     atatgataga caaccacaaa aactatccta tcaagaaaca gaaattccag attttcctat      4800
     gcaaatatta cacatcgact tgtacagcat caattacaaa ataattttaa caattataga      4860
     taaattttca aaatttgcag ctggatatac tattccagca agggatagtc tgaatatagt      4920
     taaagccatt agaaatttct ttgtactctt cggtactcca aaaaaacttg tctgcgatca      4980
     aggcgctgaa tttgcaggaa aaatatttaa agacttctgc caacaatata atattcaagt      5040
     acatttcacg tctttccaac aatcatctag caattcacca gttgagaggt tacattcctc      5100
     cttaacagaa atatatcgca tcatattaaa taaaaaaaag gagaaaaaat tggaatgtga      5160
     tcatgatgat attcttactg aaacgtttac tacatataat aacgctatcc attctaccac      5220
     taaatacact ccatatgaga ttttttacgg tagaccacat ttatttaaca aagagacgac      5280
     cttcagcaac gaacatgatt atatacaaaa acttaatgat tttcagagag taatatatcc      5340
     cgagattaaa gataaagttg aaagaaaaat gaaaattaga atcaataagt tgaataacga      5400
     taggcaagac ccggaacgac tagaaaataa tgatataata tttagaaaag aaaatagacg      5460
     aaataagctt acccctagat tcactaagca tcaagtatta gaagataaag gtccaaccct      5520
     tatcacatcc aaaaatcaga agattcataa atcaaaaatt aaaaaaagaa taaagaaaca      5580
     ggaaactcag tccatttaaa ttctaatcct taaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5640
     aaaaaaatga agtttgttac aaaagtaaga tatataaata tatataatat aaataatgaa      5700
     agttaatgaa caaaataatg aagccttaat atttttataa gttgatcatt tttgagaaaa      5760
     acatataaaa tagttatatt atataagctc aaaattcaga ataataagca taataatata      5820
     agagttacaa acactgtatg tatagaatag gcgatgaacg caataaaaaa tgtacttatg      5880
     tcacaatata tctaataagg caaagtaaca atatttcaat aaccacatac ttattcatgt      5940
     tatattaatc gaataaacta ctaaccatgc ttaatctaag actagagcag ggtctcgttt      6000
     taaggaagac accttcgttc gtgccgtcag atgtgtctcc attccggacc tcactcagca      6060
     cttggggggg gagg                                                        6074
//
ID   Gypsy-66_DEl-LTR repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_DEl-I;
KW   Gypsy-66_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-284
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7060-7060 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. AG-CT termini, 4-bp TSDs.
XX
SQ   Sequence 284 BP; 104 A; 56 C; 59 G; 65 T; 0 other;
     agttaccctc tctaccctat tcgtagagat ggagagtctg cgacgaactc gaagaggcac        60
     gatccaactg gacacaatcg ggaactaccg ttataaacag acaagagaag acagaatcgc       120
     gaagtggcga ttctgctcgg ccgagtcagt cgagtgtgaa catcgttact gaacagacga       180
     tacaaaaata aatgaaaaca agaataaatt ataaaagtgt atttattgaa taactaaccc       240
     taggagatat ctacaccaat attgttatca acgtattggt aact                        284
//
ID   Gypsy-66_LMi-I repbase;    DNA;    INV; 8549 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-66_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8549
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (28-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus. 3'-end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(556..1485,1475..2110)
FT                 /product="Gypsy-66_LMi-I_1p"
FT                 /translation="MSDTPDQGNQSKMSSTTDDEVSFNDRSVMQKPEIGNR
FT                 PLNYESSGENNTPLTSNNDPFMNPMINSPISLTMETSGISEHLCEADDETS
FT                 QNANITELNNWSTPTSTXAVEIHAPPNVSSKVENKSTPEGTNQINMLCELI
FT                 ASMRTEMQEQFVNLQSQMQGLATTESVVNLQTQVTQMRTDIRQELQEVTAK
FT                 FERLNVRQNHLGAQVDQIAKECESLKAAKQSVEQSINLIEQKVDALGEGYN
FT                 PLIDKVEQLTWEVGTLKIESKGTNLELQEIKRQIHVDECDSSSSENRNFKE
FT                 EVERWVTEKGEQILKGMYKVCIRQEVKSMTDQIKKENLPTKSATLTANTAR
FT                 SDFNLTTERVDSVQFIRPETIPSVLQNIDSQPMPGIPMEHETVSPHSDMPR
FT                 TNTVPGMSTLVTRTQPSNNGEQVTTIVIEDGLLGSRKFPTFSEENKKIHPV
FT                 IFLQTFRNILPQSWSEARKIQEIVSHIEGNASAWAASAMNRCHTYAQFEQE
FT                 FLARFWSQSVQERLRRQVFSPEPYNR"
FT   CDS           join(4788..5258,5224..5898)
FT                 /product="Gypsy-66_LMi-I_2p"
FT                 /translation="NNHKLHEGVLFYRNDPNSNHWKVCIPSACVENLIRYT
FT                 HNAWGHYGVTKCAEKIGSYCYVPNLFRQAYKIIRTCTTCQKVKYSNISKLT
FT                 NLHPIVPKEPLALVSLDTAGPMPRARGGAKYLVAVYDVFSKYVCMYATKTI
FT                 TSGPIIKKTCRRLFCKCGKRLAEDYFVNVGKPQTIITDNATNFTSGKWKDF
FT                 LREQGIKHILVSLYHPEASPVERIFREFNRFMRTYAPNKQTKWVELITPFM
FT                 QIVNNLPHPSIGITPAELIYSDIKDDEWVKPLPRIPTPIVRMEDKIRQAFN
FT                 VLTEEAQKRKQKYDSKLGRTHKFEVGNLVLLRGHPRADKLRKLNAKWQLAY
FT                 TGPFFILRIPHPGSYLLAYPGSGKIKGLHPHKDLKPYIQ"
XX
SQ   Sequence 8549 BP; 2981 A; 1497 C; 1792 G; 2268 T; 11 other;
     taatggcgct caatggagtg gccaattttt ctacaatgaa ctaattgtta ttgtttctat        60
     ttgttacatg tactggagaa aactagaact ggaagaaagg ggaacaagga aagtaaaata       120
     taaaatttta aggtacgaaa gacatacaat ttatttacaa tgagtagaag acgtcgaaag       180
     gtaagacaat gaaatttstc tattatgggc attatacatg catggactcs ttggtggtkg       240
     atagcctttg ctgcmctcca actatgtaaa aaaacttctt ttagaaagtc acttcaacaa       300
     tcttgtaaaa tttttttttt caaggcttat gtctcaatag tcttacgtca gtattgcctg       360
     tattgcacaa tatcacgtag ttagaaatct ttattcaaaa gtattcatca gtttatttca       420
     aaagtgaaac ttttaatctt tggcatattg ttcgttttgc aacaccaaat tgtgattgtt       480
     tgtgtgagtg tgaacaatag tggcaataga gggaacagtc attgttgccg agcccataca       540
     taaaatttta ttacgatgtc cgacacgcct gatcagggaa atcaatcaaa aatgtcatca       600
     actaccgatg acgaagttag tttcaatgat cggtcagtaa tgcaaaagcc cgaaatcggg       660
     aaccgaccgc taaattacga atcaagtggc gaaaacaata cgcctttgac atccaacaat       720
     gacccattca tgaatccaat gattaattca ccaatttctt taacgatgga aacttctgga       780
     atctcagagc atttatgtga agccgatgac gagacttcac aaaatgcaaa cataacagaa       840
     ttaaacaatt ggtcaacccc cacgtcgaca maggcagtcg agatacatgc tccgcctaat       900
     gtgagcagta aagtggaaaa taaatctacc ccggaaggta caaatcaaat caatatgttg       960
     tgtgagttaa ttgctagcat gcgaacggaa atgcaagaac agtttgttaa tcttcaatcg      1020
     caaatgcagg gtttagcaac aacagaatca gtagtaaact tacagaccca agtaacacaa      1080
     atgcggactg acattaggca ggaattacaa gaggttactg ctaaattcga aaggctaaac      1140
     gttagacaaa accacctcgg tgcgcaagtt gaccaaattg ctaaagagtg tgaaagttta      1200
     aaagcagcta agcaatcagt tgaacaatcc atcaatttga tcgaacaaaa ggtagatgct      1260
     ctaggtgaag gatacaatcc cctaattgat aaagtcgaac aattgacatg ggaagtagga      1320
     accctgaaaa ttgagtccaa gggtactaac ctcgaactac aggagataaa gaggcaaatt      1380
     cacgtcgacg aatgtgacag cagtagttct gaaaaccgaa attttaagga agaggtagaa      1440
     agatgggtta ccgaaaaagg agagcaaatt ctaaaaggta tgtattaggc aggaagtgaa      1500
     atccatgact gatcaaatca aaaaggaaaa tctgccgact aaatctgcaa cattaactgc      1560
     gaatactgca cgttcggatt ttaatttaac aacagaacgt gtagattcag tacaatttat      1620
     aagacccgag acaatacctt cagtgttgca gaacattgat tcacagccga tgccagggat      1680
     acccatggaa catgagacag tttcacctca ttcagatatg ccacgtacaa atactgtacc      1740
     gggtatgtct acacttgtga cccgcacaca gccttcaaac aatggggaac aggtcactac      1800
     tattgttatt gaagacggac tcttaggatc gagaaagttt cctacattct cggaggaaaa      1860
     taagaaaatt catcccgtta ttttcctgca aacattccgg aacatacttc ctcagtcttg      1920
     gtcagaggca agaaaaattc aggaaattgt cagccacata gaaggcaatg catccgcttg      1980
     ggcagctagt gccatgaata gatgccatac ttatgctcaa tttgagcaag aatttcttgc      2040
     ccgattctgg tcgcaatcgg tgcaagaaag attacggcgt caagtattta gtcccgagcc      2100
     gtataacagg tgaacgggaa tctaagaaaa tattttgaaa agtacttgaa taaaactctg      2160
     cattggacaa caccaatttc acagtcgatg tcattcggat actaaaatct agactgcctg      2220
     ctgacatcgt ggaaaaaata atgtgggtgc ccgaatataa tttgacgaat tttcttgatg      2280
     cattgaataa ttatgattta attcacaagg tgaaagaaat gtagccacaa tcctaaagag      2340
     acagttacga aacagctgat acaaagcggg taacaacaat gctgacagaa attctcaccc      2400
     tgcgcaaaat ggctcaaata gtagtctaaa caatagctac agtaatggca atggtagcag      2460
     caataacgat tgccgtatta ggcatagtaa gagggggaga gatggaaaca ggtacaatct      2520
     ggtagaccgg aatgaactgt catgtacttc tttccaaagg aaccagacta ataacaataa      2580
     caatggcact caggcactaa atggttaatc aaggcaacaa aggcctcaag tacagtcagg      2640
     tgaaagacaa agaggcagag atattagaat aaccaagtga gatcaaatag tgactggtca      2700
     cccgaatgca attgagtgca aattattgag tctgcaccaa atgcaaaggc aggtacacaa      2760
     atgactcatg tcagtcggga tagacccccg taccccgact tgtcaagtaa tatgggggat      2820
     aatttgccac aaataaactt tatgaggtac agagagggac aagacctaag acaagattta      2880
     ttacaagacc cgtcaaaccc agagattgtt caagccgtgg tacaagggaa tattggtgat      2940
     gtaaagattc aagtgatatt agattccggt gcaacggtta gtgttatatc aaatgatctt      3000
     gtaaatgaag tgtctaaatt catgcaagat ccatcattcc ctgtgcaaaa ctgtaaagta      3060
     cttatggcag tagggcgtaa aacacaaaca gtaaaaagac acgtacgtct ccccttgact      3120
     tttggaaaaa ttacagtggt gtgcaactat cttgtactag agggattaat tatcaattgc      3180
     atcttgggta tgaaatgctt ttgacaatct aaagccacag taggtatagg aaagggaaaa      3240
     tgtcattttc aagtagaaaa ggaaatgctt tctcttgatt taatctcaac caaagagagt      3300
     gaaacatgac tgtcaagtgc cgttaattta caattaattt gtccagaggt tttgttcgtg      3360
     ggagtatcaa cagccaatag ggatgacaga gtctttggca tgtgagggtc aggacatgaa      3420
     aacactgtac ctttgtaaag aacgacagca tgaattacag gagctgttaa gcaaattccc      3480
     caaagtgttt gacaatggtg ggtgacagta cctcacaaaa catattgtaa atcttcctat      3540
     gcagtacctt gttcaaagag agagtcagtg aactcgaaat aaatcatata cttaattgga      3600
     atgtaattga ttcttctaat tctccatatt gcagtcccat tttaaccata aataagccag      3660
     atggaagtgt cagattagta ttagacataa atcaaattat agtccagtga gaactaacca      3720
     gaaaacttag atgaacagtt actgaaattt tatggtgtta agtattttac agctcttgat      3780
     ttaaaatctt cctattggca gataaagttg cacgaggaaa gtcgtaaata cactgcattt      3840
     gtttgcttag gacgaagtta tcagttttgc gtcctcccct tcgagttaaa tgtttctgcg      3900
     ggcattttta ttgcagccct agatacgtct tgggaccaga gctgcgcagt aaacacacct      3960
     tatacgttga cgatctatta attgcacctc aagtgggcag agcacataga ataatggctc      4020
     gggtactagg cgattcaaac aatctggtga ctgtaaattt aaataaatac ttgtttggac      4080
     aagaaaagtc aagtttctcg gacatataat ttcaaaagaa ggaatcgttc cagattctga      4140
     aaagataggc tattaaagac gcaccagtac cccagaacaa gagacaattg aaagctttcc      4200
     tcggttttat gtcattcttt cgtaaatttt tgcctgacag ttaatgaacg ggacaatttg      4260
     ctgaacttgt tgagaaaaga caatttggga tggacaccag atagtgagcg agatttagag      4320
     cgataccggg cccccccccc gcggcgcccc agatgcccag tcgggtggtg tgcctctttc      4380
     aatggagaga aattgaaggg ccttgtggac ctgggtgtat tcggcccaat acacttgtgg      4440
     ggacatacgc gatgtattgc gataccaagc actcacattc ctgcagactt gtaaattctg      4500
     caaaaggtta gcaagatggt cactttccta aggaattcag ttatgaaata atttatatca      4560
     aaggggaaca caacgttatt gcagattgtc tttcccgttt accagtggat tgcaggaatt      4620
     ccaagagatt tcgaacaagt ctctgatttc cgcatcttat taatgcatga cggaaccttt      4680
     caccatatta ttgaagatgt gccgagacat gagtacattg caagaggctg atgaaaggtg      4740
     gaaaaagatt aggcaaaaat taagggaaga tgaaaacaat tgattaaaac aatcacaagc      4800
     tacatgaagg tgttttgttc tacagaaatg atcccaattc taatcattgg aaggtttgca      4860
     tacctagtgc ttgtgtagaa aacctaatta ggtatacgca caatgcctgg ggacactatg      4920
     gtgtcacaaa atgtgcagaa aagattggtt cctattgtta tgtacccaat cttttccggc      4980
     aagcatacaa aataattcga acttgcacaa cttgccaaaa ggtgaagtac tcaaatatct      5040
     ctaaattaac caatttgcat cccattgttc cgaaagaacc cctcgctctc gtatccttag      5100
     atacagctgg acctatgccc agagcgcgag gtggtgcaaa gtatttggtg gctgtgtacg      5160
     atgtatttag caaatacgtt tgcatgtacg ccaccaaaac tattacatct ggtccaatta      5220
     taaaaaagac ttgcagaaga ttattttgta aatgtgggta aacctcagac cataataact      5280
     gacaacgcca caaattttac tagtggtaaa tggaaagatt tcctgaggga acaagggatt      5340
     aagcacattt tagtctcact atatcaccct gaagctagcc cggtggaaag aatattcaga      5400
     gaattcaata gattcatgag aacctatgcg cccaataagc aaaccaaatg ggtagagcta      5460
     ataacgccgt tcatgcaaat tgtaaataat cttccacacc catctattgg catcacacct      5520
     gccgaattaa tttattctga cataaaagat gacgagtggg taaaaccttt gccaaggata      5580
     ccaacaccta ttgtgcgtat ggaggacaaa ataaggcaag ctttcaatgt cttgacagag      5640
     gaagctcaga aaaggaaaca gaaatatgac agtaagctag gacgtacaca caagtttgaa      5700
     gtgggaaatt tagtattgct caggggacac ccaagagctg acaaactaag gaaactcaat      5760
     gctaagtggc aattggcata tacaggaccg tttttcatcc taagaatacc acatccaggt      5820
     agctatttat tagcgtatcc tggttccggg aaaattaaag gcttacatcc gcataaggac      5880
     cttaaaccat atatacaata acactctgat tgtataattt ctctaattat atataaacaa      5940
     agcatatatg tgtgatgtta aagcggtaca cgccttacgt aatgcgtagc ggaagaactg      6000
     cgttccgaag ttaaatttta cttcgaggca cagaggtaaa tgctgattgg tagcactgga      6060
     ataactgacg actagtagtc gctagctgtc aaaaattgtt gaagcatgag aagaggccaa      6120
     tcagtgtggg ggcatgtccg atttgacatt atgcagacgc gctaactaaa ctagatccga      6180
     gtaattaaaa ctttaactaa gacctaaact atgtacacga aaattaccta aattatatac      6240
     ccatagaact aaattataaa tacgtgagat taactaaata aactatatac acgaaagaaa      6300
     ctaaacctag aaattataat aacatactat agctacagtt aatcgagctt aaaataaaaa      6360
     aaagtaaaaa gctaaccaac tgactaccta acaattaaaa ctaaaacatc caaggtacta      6420
     ctaggaatgg agaattaact tacaaggtgt gcgtacacat tttcttaagc atttgaagac      6480
     aaccaatggt aatgctctgt gtaagtattt tcgatsccga atgtattaag acattggaat      6540
     aaggtgcaac atgtaaaaaa gaccatatag aagagtttca tggataattt atgtatatgt      6600
     gttatagtat gtatgtacat atgtatttaa agaaagttaa tattaggcat agamtaagtt      6660
     ttkggcactt atsttkgata gaggattagg tgaatgttgg gtgagagata ccgccaatga      6720
     taaaagaatg gcataatact tcatggatgg gtatcgttga attttattgt gctgtagcac      6780
     gtggtgctta cttgcgtctt tggtcggata tttgcgcgat ggtatctaaa atgaataatt      6840
     atggcctcag caattctgac tttcactttc ataatcccgt ctgtgaaaat atttgagtga      6900
     gagtgaacgt gtagattgag tgaatggatg gtgcgccaaa acgaaatttc gaaatttcgt      6960
     gctgatcaaa attattaaat gtttgtctga tagaggaaag agacggacta ttgaaacata      7020
     aaatacaatg acacatcctt acatataact catggaacag taccaagttt gatcctcaag      7080
     ttgtcaagat acacaaatta agccaagtaa attatggtac atattgccag ggcaaaacat      7140
     tgtttaagag agtatatatc tctaattaaa agagtaagat taaccatact ttaaagacgg      7200
     cccaaacaaa tgcttagcac tcacacttgt caaatccatt atcagagtag tcaataaaca      7260
     gtcattgaaa tgatctgtaa tttatagagt tcttgcaggc gatttgaagt ctatcggtcg      7320
     tagtttaggt aatcgtggaa cacgggcttc caaattggca ggcgccctaa ggagtttata      7380
     aacaagcctc cttaacacac ctctaactac acaaagtttc ttcagctatc ttaatactcc      7440
     aatagtgtaa agtagttgga gggtagtggg gctgttcttg gtctccttga gggtgtatgt      7500
     acatatatat gcagacgaaa ccatgaagga acctgaaagg agaggagaag ggaattgctg      7560
     aattaaactg aaacattcct tattccatgt ttttgaaaaa aagagaaaaa gagagggaga      7620
     aaatgaagaa ggagaaataa ataatcttat aatatctaaa ggttggctta tatgaagagg      7680
     aaggaatatt tgttaaaaag aaaaaatatt gagaggcatt aaatgaaaaa ctagatatac      7740
     tgtaaatagt aaagactgaa aagtaattaa tttttcttgt tagttgggtt aggaatttct      7800
     gtattatagg taaaggtaca gttagggtta ttagagattg taaggtagaa gagaaacaag      7860
     taatggtgat aaacattgtt gaaacactgt aaccgtatat tgtatatgaa ggaaaagaca      7920
     atacatgaaa ataaaaaagg ggttttgtct agtaaaagtg ttagtgagaa acaatttata      7980
     ctgaaaaagg tgcggattgt gcgaaatttt agtggtatga gcaaggaagg tgttgggtta      8040
     tgtatgccgt gtgaatagtg agagcaagta aaaacataaa agtgcttacc ttaaccggaa      8100
     cgcagtcgtc aagttcttcc aaacagacgc tcgggaaaaa acagaaatta gcgatgtgga      8160
     ggacaaagaa acgatgccag caacgcctgc actcagccgt tacactatct tcgcacgcag      8220
     cgcctggtcc ttccatagtg agcgccaacc ggtgccacca cgtgactgag agtgttctgt      8280
     tggcattgga cagtggccgg cagaggaagt acwacttagc acgtgaccga actggccaaa      8340
     gtttctcact gaacagtcca gtgaaagtat aaactatgga aacgctgttc ctaaccaaag      8400
     actaggcaac aaaatgttgg cgggacattt aaagcgctaa aagctttaga ctgtttttca      8460
     taaaaaaagg ggggagaaaa aaattggaca aaggtcctgt ggcaggtaat ggacataaaa      8520
     aagacttatg aataatagcg ccctgtggc                                        8549
//
ID   Gypsy-66_LMi-LTR repbase;    DNA;    INV; 808 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-808
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (28-MAY-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 808 BP; 286 A; 111 C; 129 G; 282 T; 0 other;
     tgtagcgtta ccataggggt aggaggaaaa aagtatacat taagagcggt agaagaatta        60
     atgtcttctt acaatatttt ttttcacaat tgatgtaacg agtgtacatt tttactttct       120
     gtatattcat gtatatatta attaattcat gataaaaaaa gcaaatgtta atgtattttc       180
     ttcaaagagg tttcatttgt aaagtcaaca gtgtaagaat tactttcaga tgttaatgaa       240
     cagaacaagc gaaggaagct tatgtagaga cagtctattt tttgcactcg ccagtatcag       300
     tatgtctttt cgtagccgtt cgagaatgta agaagtgcaa atgtacaaaa tgtaaaggtt       360
     tctttcttta aaaatatacg tgaagtttta aacggaattg tgctgactta tttctaatga       420
     agaggaacta ccccgagttt taattggcct taaatctgga cttacgcctg agattttcta       480
     cgtctgctgc agcatcaata ctacaatgtc agtagaaaga aaaaaatgat ttctttaaaa       540
     tatgaacata ttactaatga ctcttttaca tagtgtttca aaaggagtga gccggagctg       600
     aaaaaactat acaaaacaag cccaatagtg actgaacttc gtaactataa cccaaatttt       660
     ccattaatta acttatagac aaaaaatctt gaatattgta ggaattttaa ttatttactt       720
     atttatttcc aatgcgatta gttaaaatga aaatatcatt ctatttacta ccattatttt       780
     aattatttag tattcatgta attgttca                                          808
//
ID   Gypsy-66_SpEx-I repbase;    DNA;    INV; 4663 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4663
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6947-6947 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4620
FT                 /product="Gypsy-66_SpEx-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPTTRKGEALRKQRGEDEGDVTLTEEESVAERGHVDD
FT                 AARAGSRPTSQPAPQIPTDFLSTLIETITRAQVEANRSLINTLMTSSGDFR
FT                 ASTPVGISSSNATSAGVAVAPAPCSDANFTKCTARYDGSSQDTEVLEAFLD
FT                 AVEVYKECAAVSDEHALRGLPMLLEGDAAVWWRGVKASVPTWTDAIARLRA
FT                 TFGVVQPAHQTLREIFAREQGEERAETFICKVRALLAKLPYTLEENVQVDI
FT                 CYGLLHRRVVKRVPRDSVRRLDDLLYKARIAEDTYKASKVKSDPVNNNKST
FT                 DPPAVTTTDRDLTQLSSATTNATTSRCSNRNRPRCNYCKLFGHVSDECRNR
FT                 EKSTIKFNSNNRELRCYGCGKQGVVRSKCDVCAKTISKPNDKTSFNIVDVD
FT                 FCTEVEYNSYASPSDIDSCVNITNISTRDNHPMVNISVAGRGGVAIIDTGA
FT                 THSIASPLLHRVLVDSGVHFTETKRFVRLADGSQGWRDLLSAEVEVSIKGR
FT                 RVTCQFLVLPGSDIRTLLGIDFLTRAGMVIDVARRTWSFSDSPGQPYDFVY
FT                 TYTLDSADTGLLHTTPSSELSLRSDEGCKLNSEQRRALNAFIEERAPQFAR
FT                 EGPATEFAAHRIKVSPQQEPIACPPYRMSQVKREALRNELDKLLQGDIIEE
FT                 CESPWASNVVLVGKKDGGLRLCIDYRKLNAVTEPDRYPLPRIEDILHAAKS
FT                 SEYMTTLDLRSGYYQVSVCPEDQDKTAFTTPLGTFRFKRMPMGLRNSGATF
FT                 QRMMDRFRSNLKEVELLAYLDDLILLSPGPFEKHLADLEAVFERLAMFKLR
FT                 VNRDKSVFARESVKFLGHVIVPGGIQVDPDKTAAVNNMAAPQNVKHLKCFL
FT                 QTSSWYRRFIGNYAEIARPLTNLLKKSSVWRWDAEQQEAFERIKSLLVSAP
FT                 ILRQADEAKPFILCTDSSSYCLGAVLMQGEGHDERPIEYASRLLTSAERNY
FT                 TTTEREALAVVWALGKFRGYVETAKVTVRTDHQPLRWLMSQRSPSGRLARW
FT                 ALTLQEFDLSIEYTPGRSNVVADTLSRPVCPDEQNDCDLCMTVIDMPKRNS
FT                 GDIRSNQLLDPEVRKIIEDMESDEPSRGRPWSDRGYTISDGILYRYSLESD
FT                 DGEDCCLVVPEHERRQVMVDLHDAPTAGHFGVERTLSRVRARYYWPGMRTF
FT                 IANYIRECVPCQKYKADNRKPAGLLQTPAVSRRFEVVSVDLFGPLVETPRK
FT                 NRWVLIVEDVCSRWVELFPLENATSVECARTLANEVFLRYGVPRRLISDNG
FT                 VQFVSEVMQQVCHVLGISQSLTPYYHPQANPIERKNRDLKPQLAMLVGHDH
FT                 TTWDLHLASIRFAMNSAITSSTGYSPAYLTFGRELRAPSDSAIDMRAIVEH
FT                 DNFVPSITPYLKKMAATLDEARDIHEKAQATQKDTADQKRRLPPEYKVGDL
FT                 VLLRTQGPNDTDRGQTAKLIPRRDGPYKIGKVISPTTYGLENVQTGTNVGK
FT                 YHVSHLTPFAGQVEPPIREKRRRGRPRRYLD"
XX
SQ   Sequence 4663 BP; 1171 A; 1188 C; 1311 G; 992 T; 1 other;
     ctggcgccca aactagtggc cgaatcgtaa cgaccgttac aaaccgagat ccagtgccta        60
     cgtgaccgcg ggtaaagtac ctacctaccc gaacctactc gccgcgttac cgttgtcatc       120
     actaacgtga agatgccgac aacgaggaaa ggagaagccc tccgtaaaca acgtggtgaa       180
     gatgaaggtg acgtcacgct cactgaagag gagagcgtcg ccgagcgcgg ccacgtggat       240
     gatgccgcgc gcgccggctc gaggccgaca tctcagccag ctccccagat cccaacagac       300
     ttcttatcca cgctgatcga gacgatcacg cgtgcgcaag tggaagccaa cagaagcctc       360
     atcaacacgc tgatgacgtc cagcggcgac ttcagagcct ccaccccagt cgggatctcg       420
     tcatcaaacg cgaccagcgc aggtgtcgct gtcgcgcctg cgccgtgcag cgacgccaac       480
     ttcacgaagt gcacggcgag atacgacgga tcatcccagg acaccgaggt cctggaagcg       540
     ttcctggacg ccgtcgaagt ttacaaggag tgtgcagcgg tgagcgacga gcacgcccta       600
     cgtgggttgc ccatgttgct ggaaggcgac gccgccgtgt ggtggcgcgg cgtgaaagca       660
     tcggtgccca cgtggacgga cgcgatagcg cggcttcgcg ccaccttcgg cgtggtgcag       720
     cccgcgcatc aaaccctccg ggaaatattc gccagagagc agggagaaga acgtgcagaa       780
     acatttatat gtaaagtgcg cgcgttactc gctaaattac cgtacacgct ggaagaaaat       840
     gtgcaggtgg acatttgcta cggtttactg caccgacgcg tagtgaaaag agtgccgcga       900
     gacagtgttc gtaggttaga cgacttacta tataaggcta ggatcgcgga ggatacctac       960
     aaagcgtcaa aggtaaagtc cgaccctgta aataataata aatcgaccga cccaccggcg      1020
     gtgactacca ccgaccgaga tttaacacaa ttaagttccg ctaccacgaa cgcgactacg      1080
     tcgcgttgca gcaacagaaa taggccccgt tgtaattatt gtaaactttt cgggcatgtt      1140
     agcgacgagt gtcgtaatcg cgagaagtct accattaagt ttaatagtaa taatagggag      1200
     ttacgttgtt atggttgtgg taagcagggc gtcgtgaggt cgaaatgtga tgtttgcgcg      1260
     aaaacaatat cgaaacccaa cgacaaaaca tctttcaaca ttgttgatgt agatttttgt      1320
     accgaggtag aatataatag ttacgcgagt ccgagtgata tagattcgtg cgttaatatt      1380
     acgaatatta gtacgcgcga caatcacccg atggtaaata ttagtgtcgc gggccgtggc      1440
     ggcgtggcga taatagatac cggcgccacg catagcatcg cgagccccct cttacaccga      1500
     gttctagtag actcaggagt ccacttcacc gagacgaaac gtttcgtgcg cctggctgac      1560
     ggatcgcaag ggtggaggga cctgttatca gccgaggtag aggttagtat taaaggtcgt      1620
     agggtaacgt gccagttctt agtattacct ggaagtgata ttaggacgct tttaggtata      1680
     gattttttaa cgcgggccgg catggtaata gacgtcgccc gccgcacatg gtcgttctcg      1740
     gacagtccgg gacagccgta tgattttgtt tacacgtata ctctcgactc agctgataca      1800
     ggcctattgc acaccacgcc ttcaagtgag ttatcgctgc ggtcggacga aggttgcaag      1860
     ttgaactccg agcagcgacg cgccctcaat gcgttcatag aggagcgcgc gccgcaattc      1920
     gcgcgcgagg ggccggcgac ggagttcgct gcgcatcgta taaaggtgag tccacaacag      1980
     gaacctattg cttgtccacc ttaccgtatg tcgcaggtta agagagaggc tttgcggaat      2040
     gagcttgata agctgctgca gggcgacatc atcgaagaat gcgagtcgcc ctgggcatcc      2100
     aatgtcgtac tcgtgggtaa gaaggacggc ggtctaaggt tatgtataga ctaccgaaag      2160
     cttaatgcgg taaccgaacc ggaccgatac cctctcccgc gtatcgagga catactacac      2220
     gccgccaaga gtagtgagta tatgactact ctcgatctgc gctcaggtta ttaccaggtg      2280
     agtgtctgcc cagaggacca agacaaaaca gcgttcacga caccactggg cacatttagg      2340
     tttaaamgga tgccgatggg gttacgaaat tccggagcca ctttccaaag gatgatggat      2400
     cgtttccgtt ctaacctgaa ggaagtggaa ctcttggcgt acctggatga tttgatcctg      2460
     ctgtcaccag gtccttttga gaagcacctg gctgacttgg aggcagtctt cgagcgactg      2520
     gccatgttca agctaagagt caacagagac aagagtgttt ttgctaggga gtctgtcaaa      2580
     ttcctaggac acgttatcgt gccaggtggg atccaggtgg accctgacaa gaccgcggct      2640
     gttaacaaca tggccgcccc tcagaacgtg aaacacttaa agtgcttctt acagacgtcg      2700
     agctggtacc ggcgttttat tggtaattac gctgaaatcg cgagacccct cactaacctc      2760
     ctgaagaagt cgagtgtttg gcgatgggac gccgagcagc aggaggcgtt tgaacgcatt      2820
     aaatcactgc tagtttccgc tcccattctc cgtcaggcgg atgaagcgaa accctttatc      2880
     ctttgcactg atagcagctc ttattgcctt ggagctgttc tcatgcaggg ggagggacat      2940
     gatgaaaggc cgatagaata cgctagtcga ctcctcacca gcgccgagag gaactatacc      3000
     acaaccgagc gagaggctct cgccgttgtg tgggcactcg gtaagttccg cggatatgta      3060
     gagactgcga aggtcaccgt taggacggac caccagcctt tgaggtggct gatgagtcaa      3120
     aggtcgccta gcggtagact ggccagatgg gccctaacgc tgcaagagtt cgatctcagc      3180
     attgaatata cgcccggtcg gtcaaacgtg gttgcagata ccttgtcgcg accagtttgt      3240
     cctgacgagc agaacgactg tgacctatgt atgacggtta ttgacatgcc gaaaaggaac      3300
     agtggtgata tccgcagcaa tcagctgtta gacccagagg ttcgcaagat cattgaggac      3360
     atggagtccg acgaaccctc tagggggagg ccctggtctg accgtggata caccatatct      3420
     gacggtatcc tatacaggta cagcttggag tccgacgatg gagaggactg ttgcctagtt      3480
     gttcctgaac acgaacgcag acaagttatg gtagacttgc atgatgcgcc gacagctggc      3540
     catttcggtg tggagcgcac gttaagccgc gttcgtgcta ggtactattg gcctggcatg      3600
     cgcacgttca tcgcgaacta cataagggag tgcgtgccat gtcagaagta taaagccgac      3660
     aatcgcaaac cagcggggtt gcttcaaacc cctgctgtat caagacgatt cgaggtagtc      3720
     tctgtggact tgtttggtcc tctggtagag acaccaagga agaacaggtg ggtactgatc      3780
     gttgaggacg tctgctcacg ctgggtggaa ctgtttccat tggagaatgc caccagcgtc      3840
     gaatgcgctc ggacacttgc gaacgaagtc ttcctcaggt atggagtgcc acgccgcctt      3900
     atcagcgata acggcgtgca attcgtgagt gaggtcatgc agcaggtatg ccatgttcta      3960
     gggatcagcc agtcgctcac accctattat caccctcaag ccaacccgat agagaggaag      4020
     aatcgtgacc ttaaacctca acttgccatg cttgtaggcc acgatcacac cacctgggac      4080
     ttgcacctcg cttcaatcag gtttgctatg aactctgcaa tcactagcag cacgggatac      4140
     tcaccggcgt acctcacctt cgggagagag ttgcgagccc cttccgactc cgcgatagac      4200
     atgagagcta tcgtggaaca cgacaacttc gtgcccagca ttacgcctta tttgaagaag      4260
     atggctgcga ccctagacga agctagggat attcatgaga aggcgcaggc tactcagaag      4320
     gatactgctg atcagaagag gaggctgccg cctgagtata aggtaggtga cttggtcttg      4380
     ttgaggacgc aggggcctaa cgacacagac cgcggccaga ccgcgaagct tatcccacgt      4440
     cgtgacggcc cgtacaagat agggaaggtc atcagcccga ccacctacgg tctggagaac      4500
     gtacagactg gaacgaacgt aggaaaatat cacgtttcgc acctcacacc tttcgcgggt      4560
     caagtagaac ctcccattcg cgaaaaacgc aggcgcggca gaccgcgtag gtacttggac      4620
     tagcccaact gtggggacac ttagttaggc tagaggggga gga                        4663
//
ID   Gypsy-66_SpEx-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-330
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6950-6950 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 330 BP; 77 A; 96 C; 81 G; 76 T; 0 other;
     tgtagcgcgg gattttattt ggttaggctg tggcttcgct acactgtggc tgcaacgcgc        60
     cgcagcgcta cctattacag taacgcgcat gcgcggcccc ccctccgccg cccgcgcacc       120
     ccgcgcgcca acgcaggccg aggtggcgcg agcggcggcg cgagagagcg ccccaaccct       180
     cgtcgcgtac gggcgacatg tacattcctc cgcgactcga cgccacttta accttaaatg       240
     taaccatgtg cttaaattta agaactatag atatgtatgt gattaattat gttaaacaat       300
     caataaagtt ttaatgtttc aaccattaaa                                        330
//
ID   Gypsy-66_TrVa-I repbase;    DNA;    INV; 4879 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4879
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 311-311 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..4677
FT                 /product="Gypsy-66_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MNEEQFKQFLQVFQDAIRTNPAQISSQPVILNFEPFN
FT                 AKSEKFSQYKERFDNYAAIKGITDPSLLKKTFLNCVGSDTYEIIKAISAPK
FT                 SIEELSYVEITDNLKKHLCPPPNILIEQHRFLSRTQNENESIGQYIASLQK
FT                 FLPNCDFKCSCGISTADQFLRAQFIRGLRNSSIREKLLLEANLTFQSATSK
FT                 ALLLESSYRDSQEIKNVLNNGSSDSSVNKISKSHLSRTNSQSSQSSQYRQH
FT                 RNRSSTPVSHRNFSQSRSHSRSNSAQRYNRKRWIDFQKLGIADLCVKCGKN
FT                 NHRSKECRVNRNNLKCSSCGNSGHVASVCITTLLRKSRNQNVNSIDAEDQS
FT                 CNNFENQSSDDVAVFNSVHSCYHMSPFSNSEETCDVSGEDEKYFVTVSIEG
FT                 CPTTFEVDSGTGCTLLPESEFLKLNSNIDLLPTSRKFKSYDGGTIEPCGFA
FT                 KVQVTVNNISYKVPLFVVPSNFSAILGRAWIRRFKINLDDIDKARRKPVVK
FT                 CISSNSEIHRVTVAEIVNEFPEISEQKIGKIPDVLCSLPLKNEAKPKFIKS
FT                 RDPPYALRDAVDVELTELEKQGVITPIESSDWGSPLVPIPKANNKVRLCVD
FT                 YKTTVNPQLLEHHFPIPKIDEIISNLRNATVYCKLDLFKAYLHVEVDNDSK
FT                 IIQTISTHKGTYLMNRLGLGIKTAPGQFNQIMRKILHGLVGVDSYFDDIVI
FT                 YGNDYEDCKRNLIACLKCLQKHNLHLNLPKCLFFKRKIAFLGFIIEGRNVY
FT                 KDPTKVSAITEARRPTNHKEVKQFLGMVTHYSRFIPNASTVTFPIRQLLVK
FT                 NHPFKWTCNCESAFRKLKSIISNDTVLISYDPSLPVSVECDASPVGIGAVL
FT                 SHTINGCERPVMFVSRSLSPAEKNYSQLDREALAIVFALDRFFMYIYGRKF
FT                 TLISDNKPLVRIFHQHNKLPPMTAARLLRYAAYLSIFNYEIKHQPGKSNET
FT                 ADYLSRFPMETQSTIGNQAYLDLELASCHEHTINQISSSEIISEDVARETL
FT                 NDPELSSILTELQNNPDHPACLEYTLTDGIIFKGSRIFIPGKLRPNVLKEL
FT                 HSTHSGITKLKQLARRYVYWPAIDKDIEKLVRSCETCALAQKSPQKVPLHR
FT                 WETPDENFNRVHIDYAGPVKGLHYLILVDAKSKWPEISVIKSSPTTDITIQ
FT                 LLEDIFTMHGYPQMLVSDNASIFSKENSKFTEYCKKRGIFQCFTAPGHPAT
FT                 NGLAERYVQILKQKLLKMADDPGAIQDKVKRILLQFRATPLADGKSPAENY
FT                 LHRRIRIRLDAIRPFKPPANPIISESVRSLAINQRVLARVYSDNKPKWEFG
FT                 IIVKKFGQLHYLVRLQSGRSLKRHIDQLKATLCGKSSNNDLISKEIPVSSQ
FT                 SPQHKKRVSFATQPQVFEYVKNPKLVVPAKIGHHSAYSMVRPPANVSKQKP
FT                 NISSGIPVTLPSVSNQSSPQPSLSSNSQHSALKQSXPQPSTSSVSQXSASQ
FT                 NVRSSHKNLASDRGLHRTPASRPARNVRLPSHLKDFLTDFNDKYS"
XX
SQ   Sequence 4879 BP; 1544 A; 1063 C; 868 G; 1393 T; 11 other;
     ttttggcgac gaggattaaa ccgcgatgta ataatttctc cgtacgcgaa atgcccgggt        60
     atgtatcatc gtttcgcgaa tcgcgtatca gccgttccgt actgagcacg tgggtgagtc       120
     aactgaaatt cgcactccag caccagcatg aatgaagaac agttcaaaca attcctgcaa       180
     gtcttccaag atgcaattcg aacaaatcct gctcagattt ccagccagcc agtcattctt       240
     aactttgagc cattcaatgc gaagagcgag aaattctccc agtacaaaga aaggtttgac       300
     aattacgccg caattaaagg tattactgat ccttctctac ttaagaaaac gttcctaaat       360
     tgtgtaggaa gcgacaccta cgagattatc aaagcaattt cagcgcccaa gtccattgag       420
     gagcttagct acgttgaaat aacggataac ctcaaaaagc acttgtgtcc accccctaac       480
     atattgatcg aacagcacag gtttctctct aggacgcaaa atgagaatga gtctattgga       540
     cagtatattg cttctctgca aaagtttctt ccaaactgcg atttcaagtg ctcctgtggt       600
     atctcaacgg ccgatcaatt tctccgagca cagttcattc gagggttacg caactcatct       660
     atccgtgaaa aactattatt agaggcaaac ctgactttcc aatcagcgac aagtaaggca       720
     ttactgttag aatcttctta ccgggatagc caagaaataa aaaatgtgct aaacaatggt       780
     tcgtcagact ccagtgtcaa taaaatttct aaatctcatt tgtctcgaac aaattctcag       840
     tcttctcagt cttctcagta taggcagcat agaaatagat catctactcc agtctctcat       900
     agaaatttta gccagtcgag gtctcacagt cgatcaaact cagcacagcg ctacaataga       960
     aaacgctgga ttgatttcca aaaattaggt atcgcagatc tctgcgtaaa atgtggtaaa      1020
     aataaccatc gaagcaaaga gtgtcgtgtc aacagaaata atctcaaatg ttcttcctgt      1080
     ggtaattccg gtcatgttgc cagtgtctgc attacaacac ttttacgtaa aagtcgtaac      1140
     caaaatgtga actcgattga tgctgaagac cagtcatgta ataattttga aaaccagtcc      1200
     tccgatgatg ttgctgtatt taattctgtt cattcctgtt accatatgtc tcctttttca      1260
     aactctgaag aaacatgtga tgtttccggg gaagatgaga aatactttgt cactgtctca      1320
     attgaaggtt gcccaaccac ctttgaagta gattccggta ctggctgtac cctgcttcca      1380
     gaatcagaat ttttgaaact gaattcaaac atagatttac ttcccacttc tcggaaattt      1440
     aaatcgtatg atggtggaac tattgaacca tgtgggtttg caaaagtcca ggtaacagtc      1500
     aataatattt cttataaagt gccattattt gttgtaccct ccaacttctc tgctattctt      1560
     ggtcgtgcgt ggatcagacg attcaaaatt aaccttgacg acatagataa agctaggcga      1620
     aaacctgtag tcaaatgcat ttcatcaaat tctgaaattc acagagtcac agttgcagaa      1680
     atagtgaatg aattccctga aatttccgaa caaaaaatag gtaaaatccc agatgtcctt      1740
     tgttctctac ctttaaaaaa tgaggcaaaa cctaagttta ttaaatcaag agacccacct      1800
     tacgccctca gagatgctgt tgatgtcgaa ttaacagaat tagaaaaaca aggagtaatt      1860
     acacccatcg aaagcagcga ctggggatct cctttagtgc caattccaaa ggctaacaat      1920
     aaagtaaggt tatgcgtcga ttataaaact acagtgaatc cacagttgtt agaacaccac      1980
     tttccaatcc caaaaattga tgaaataatc agtaatctca gaaatgcaac agtttactgt      2040
     aagctggact tattcaaagc gtatttacac gtagaagtcg acaatgatag taaaattatc      2100
     cagacaattt caacccacaa agggacttat ctaatgaatc gcctagggct aggaatcaaa      2160
     acagctccag gtcagttcaa tcaaattatg cggaaaatct tacacggatt agttggtgtc      2220
     gactcttact ttgatgacat tgttatctat ggaaacgatt atgaagattg taaacgtaat      2280
     ttaattgcat gtttgaagtg cctacagaaa cacaacttac atcttaacct cccaaagtgt      2340
     ttgttcttca aaagaaaaat tgcatttctc ggattcataa tcgaaggtcg aaatgtgtat      2400
     aaagacccca ccaaggtctc agcaatcact gaagctcggc gtccaacaaa tcataaagaa      2460
     gtgaaacaat ttctaggaat ggttacccat tactctcgtt ttataccaaa cgcatctact      2520
     gttacctttc cgattcgtca acttttggta aaaaaccatc ccttcaaatg gacttgtaat      2580
     tgcgagtcag cgttccgcaa gctaaaatca atcatctcca atgatacggt cttaatatca      2640
     tatgatccaa gtcttccagt cagcgttgag tgtgatgcaa gtccagtcgg aatcggcgca      2700
     gttttgtcac atactattaa cggttgtgaa agaccagtta tgtttgtttc cagatcactg      2760
     tctccggcag aaaaaaacta ttcacaactc gatagagaag ctcttgcgat agtttttgct      2820
     ctggacagat ttttcatgta catttatgga cggaaattca ccttaatctc agataataaa      2880
     cctttggtgc gcatctttca tcaacataat aaattgccac caatgactgc cgcaagactt      2940
     cttaggtatg cagcgtatct ttctattttc aattatgaaa taaagcatca gcccggtaaa      3000
     tctaatgaaa ccgccgatta tctttccaga tttcctatgg aaactcagtc taccattggt      3060
     aaccaggcat acttagatct tgaactagca tcttgtcacg agcataccat aaaccagatt      3120
     tccagctcag aaataatcag tgaagatgtt gcacgagaaa ctctgaatga tccggaatta      3180
     tcaagcatcc tcacggaatt acagaataat ccagaccatc cagcatgcct tgaatacact      3240
     ctgacagatg gtatcatctt caaagggagc cggatcttca ttccaggtaa actccgtcct      3300
     aatgttctaa aagaattaca ttcaacccat agtggtatca caaaattaaa acaacttgct      3360
     agacgttacg tatattggcc agctattgac aaggatatcg agaaattggt gcggtcatgc      3420
     gaaacttgtg ctttagcgca aaaatcaccc caaaaggtac cgcttcaccg ttgggaaact      3480
     ccggatgaaa atttcaatcg tgtccatatc gattatgcgg gtcctgtgaa aggacttcat      3540
     tatctaatcc ttgttgacgc aaagtcaaaa tggccagaaa ttagtgttat taaatcttca      3600
     ccaactaccg atatcacaat tcaactttta gaagatattt ttaccatgca tggatatcca      3660
     caaatgcttg tctcagataa tgcttccata ttctccaagg aaaattcaaa atttactgaa      3720
     tattgcaaga aacggggaat tttccagtgc ttcacagccc ctggccatcc ggctacgaat      3780
     ggtctcgcgg aacgatacgt gcagattttg aaacaaaaac ttctcaagat ggctgatgac      3840
     ccaggagcaa ttcaggacaa agtcaagcgc atcctacttc aatttcgagc tacaccctta      3900
     gcggatggaa aaagcccagc ggaaaattat cttcaccgcc gtattaggat acgtttagat      3960
     gcaattcgcc ctttcaagcc tccagcaaat ccaatcatca gtgaatcagt gagatcatta      4020
     gctattaatc agagagtcct agctcgtgtc tattcagata ataaacctaa atgggaattt      4080
     ggaatcatcg tcaaaaaatt tggtcagttg cactatttag tgagactcca atctggccgt      4140
     agtctaaaac gccatattga tcagttaaaa gctactctct gtggtaaaag ttcaaataat      4200
     gatctcattt ctaaggaaat tccagtctct agtcaatctc cccaacataa gaagcgtgtc      4260
     tcgtttgcta ctcaaccgca agtgttcgaa tatgtcaaga atcccaaact agtggttcct      4320
     gctaaaatag ggcatcatag tgcctattca atggtacgcc ctccggccaa cgtgagtaaa      4380
     caaaaaccca atatttcttc tggtattcct gtaactttgc caagtgtttc taatcaatct      4440
     agtcctcaac cgagtttatc ctcaaactca cagcatagtg cattaaagca atctwcaccg      4500
     caaccgagta catcttcagt ctcgcaacma agtgcgtcsc aaaacgttcg atcaagccat      4560
     aagaatttag cmtctgatcg tggtttgcat cgaacgccwg cctcaagacc ggcaagaaac      4620
     gttcgcctgc ctagtcactt aaaagacttt cttactgact ttaatgataa atactcttga      4680
     aatttgtatt aatatkcgga agtgagtttt tttttcaagt tccctttctt tattctccga      4740
     gcaattaaat tgctacaccc gtctttgtaa atmtaggaat cattaattca ktscattcgt      4800
     acaatgagct acattgtwat cttccttatc taacttgtaa atatcaaaat aactttgtwt      4860
     tttttttcgt ggggaagag                                                   4879
//
ID   Gypsy-66_TrVa-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-66_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 370-370 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 209 BP; 45 A; 46 C; 33 G; 85 T; 0 other;
     tgtagtgtac caataatgtg ttacgttggt attgcgatta gtgctgctct ggtagcatca        60
     ctgcctgtca acctgcctgt caattgtcaa tgaatacatg tcgtatgatt cgttctatct       120
     agtctcgtcc tcttttatta tccttattaa ttctctcaag tttaagtata ccttcatata       180
     tctttctcgt tcattcttcg gtcactaca                                         209
//
ID   Gypsy-670_AA-I repbase;    DNA;    INV; 7219 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-670_;
KW   Gypsy-670_AA-I; Gypsy-670_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7219
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7219
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7219 BP; 2588 A; 1600 C; 1209 G; 1822 T; 0 other;
     ggcgcagtcg taacggatta cgcgttcctc gtttcatacc cgcgagtgtt gtgaagttcc        60
     tgccagacag ccaacgagag aaaatcggaa cactgaaagg cgtcgacgag ggaatatcgt       120
     cgaattgcgg actcacccca caggaggaac ggaacgttag accctacatc ggaaccatcc       180
     aggcggaatc aaccgcagca ggaccagccg aaggaatatc gaccggacca gcagcaagtc       240
     gagggaatat cgacaaaaat tttaaacgta agtaaatttt aattttctat atttttataa       300
     acaagtgaat aatcgaataa ctgaaaagtg aataatttaa taattgatag aagtgaaaaa       360
     tattataagt aaagtgaagt gattgactag gaactctatg cgtagcacaa gatccaaagc       420
     tatgagcgaa aatcagaatc aagaactcat ccaaaagatg gatgagttag aaaggctcct       480
     agagctacaa cgaattcaga tcgataattt acaaagttca aatgctgcac ctagttcagc       540
     tgccctgaca actactccat acgcgagtac ttttgatgtt actcgaattc cagatattat       600
     aaaaataata cctggatacg atggtaatgc aaaagagctt cccgcgtgga taagctctgt       660
     cgaacagaag ctggagtgtg cgacagcgca agtcccagcg aatgaaaagg ataacgcgat       720
     taaaatttgg acatccgtta ttcgtgataa aattaccggc aaagctaacg aaattttgct       780
     gaataaccaa accgaatgta ggtgggacca cattaaggcc caacttaccg accgtttcgg       840
     tgacaaacgg gatcttgcta caataataag caaaattcct tatgtcaaac aaggtaatcg       900
     atctgtagaa gaattctatg aagaatgcac agaaatttta gcagatctta atgcaaaagt       960
     agttttagac cctagtctaa aaccctgtgc aaaagcagta atggcttcat acgaatccat      1020
     gttaatgaat gcatacatag atggcttgca cgaacctatt tcttcactaa cgcgaaccag      1080
     caggccaaaa gaccttctgt ctgcctatca gcatgcccaa gaccaagcaa atgcagcgag      1140
     tagaaaaaat gaaaaatcta aattcgaaac aaaaccacct attgatcctc caaaaatcca      1200
     cagagctcag aatgttacaa atcgccatgg aaatcggaat ccaaaccaac cctattacta      1260
     ccctaaccaa aaccaaacca atcgaccagg atattttcct cacccaaaac cttaccctta      1320
     ccaatctgca aacagaccac cacttacata caataaccta ccttcatcta gtaatgtggc      1380
     gaattatcaa aaccaaacca gaccgccaat acttgccata aaaaatgaac cccactctca      1440
     caacaatttt cggagaaacc ctacagtttc aaaccaaatt aattatcagg aattgaatga      1500
     acccccagaa acaactactg aagaagcata tgaatattac gaccatcaca atcctcaaga      1560
     attatatgag cctccggttg atgatgaggt aaattttcaa tcggatccaa ggccggaaca      1620
     caccgaataa cacctaataa ctttctaccg tatgtcgaga tccagacaaa aaatagaaca      1680
     ttgaaattcc tagtagatac aggagctaat aaaaattaca tatcacccca atacgcaaac      1740
     cctaaaatac gaaaagttgg acctccaagc agaattaaga acatcaatgg atcctttgat      1800
     ctaagccaat atatagaagt aaacatgttt tttaattatg gtacccttcc ccatcaaaaa      1860
     tattacgttt tcaaatttca tgagtttttc gacggactaa tcggttttga aactctcaat      1920
     gcactcaacg ctatcataga cacagcatcg aactctctca ctataggtga cataaatatt      1980
     cctatgaaga aaaaatttcc aaactacgcg caaataaatt ttaatagcca agaaactatc      2040
     aacaaatcac ttcctgtctc aataaaagaa ggagatttct atatccacag tgatatcttt      2100
     attacaccca atattctcat acctcaaggt gtatacaccg cagaaaatca tcatgctata      2160
     tttcccgtaa ctaacctaga acacgaacct aacaccctac ttttcgatag cgaggtacct      2220
     atagctgaaa ttcacaactt cgaagaaatt agtcgctctc ctataaaaca accttccaat      2280
     accccgataa tcaatgaaat ccgatcatct catctaaacc aagaagaaag atcaaaatta      2340
     ttcaatgcca ttcaggaata cgaagatgta ttctacagag agggttctga cctttctttc      2400
     tccaatgtgg taaaacatag aatagagact aaagataacg ttcccgtata cacgaaaagc      2460
     tatcgttacc cattcatcca caaacaagaa gtcgaacgac agatagcaga catgcttgcc      2520
     aaagggatta ttcagccaag catatcacct tggtgctctc ccatatggat tgtgccgaag      2580
     aaagctgatg catccggcaa acagaagtgg cgcttggtag tcgactatag aaaattgaat      2640
     gagaaaacta tagacgacaa atacccgttg ccaaatataa cagatatctt ggataagtta      2700
     ggtcgatgcc agtatttcac tactctagac ctaacatcag gattccacca aatagaggta      2760
     caccccaagg acgtacctaa aacggctttc tcagtagaac atggccttta cgaattcgta      2820
     agaatgcctt tcgggttgaa aaatgcgccc gcgacattcc aacgtgtaat ggatcatgta      2880
     ctcagagact taataggaaa atgttgtctc gtctacatgg acgatatcat cattttctca      2940
     acatcccttc aagaacacat cgaaaatctt agaaaagttt tcgccgcctt acgaaaagca      3000
     aacctaaaaa ttcaattaga taagagcgag ttcttgaaaa aggaagtcgg attcctcggt      3060
     catattgtca ctgaccaagg agtaaaacct aatcctaata agatagaagc cattaacagg      3120
     tggcctctac caaagaatca gaaggaactc aaaggatttc ttggaatcct agggtactat      3180
     cgtagattca ttagggattt cgccaaaata actaagcctt taacagctca actacgcaaa      3240
     ggcgaaatga tagaacacac accgctattt gtaaaaactt tcgagaaatg taaagcgtta      3300
     cttacacaaa gtgatgtctt agcatacccc gacatggacc aacagtttat cctcactact      3360
     gacgcgagta actttgcact tggagcagta ctatcgcaag gtcaagtggg aaaagacaaa      3420
     ccggttgcgt tcgcatcccg aacgttgacc aaaacagagg aaaattattc agccatagaa      3480
     aaggagctat tggccatagt atgggcgact caatacttcc gaccctacct gtttggaaag      3540
     aagtttaagc tatacactga ccaccaaccc cttacttatg ctctgaattt gaagactcca      3600
     aatacaaagt tagtaaaatg gagattaagg ttgctcgaat atgattttga gataattcat      3660
     aggccaggta aacagaatgt tgttgccgac gctctatcca gaatcccagg agattccaaa      3720
     gagccttatc ctaaccaaaa tcccagacaa atgttaactg aacctacagt agacattaat      3780
     gtcaatgaag aagaagtttc taatgatgac aattcagttc attcagctga ctcagattca      3840
     tcagatctga ttagctttac agaaaaccca ataaatattt tccataatca attaattcta      3900
     aagattggag ttaatgaatc agaggaatac gaagaagtgt ttccaaggat gcaccgaagg      3960
     acaattacta aagtccactt cgggattccc cttctcataa gaatatttcg ggaatacatg      4020
     agcccaggca aggttaattg tatccattgc cctgattccc tctttcaatc tctacaagta      4080
     gtttataaaa actactttag taggtgcaaa acttttaaag ttgttatttc ccaaaaatta      4140
     ctgatcgatt tgaaaactgc agaagagcag aacacgatca tcgcagacac ccacgaaaca      4200
     gcccatagag gtattttgga aaacaaggaa gaaatattca gacggttcta ctttccaaag      4260
     ctcaaacaga aagtcagggc ctatgttttg ctatgcaaag tgtgcaatcg gcaaaagtac      4320
     gaaaggcacc cctataaaat tcagctatcc gaaaccccca ttcccaaacg gcctttggac      4380
     attattcacg tcgatgtgta tattgtacag ccgaacctat tcctgtctgt tatagacaag      4440
     ctatcgagat tcggaacact tttgcccata aagtctcgat gtatatcaga catcaggaaa      4500
     gccttactaa aatattttgc tatgtacggt accccaaaat tgatagtgtc ggataatgaa      4560
     cccgcactaa agtccattga gataagaggc ctacttttcg acctccacgt acaacaatat      4620
     ttcacgcctt ctaatcacag ccaagtcaat ggaattgtgg aacgttttca ctccacaatc      4680
     agtgaaatct ttcgcactaa taagcacaag tacgaagatt tgtccaataa ggaaaaattc      4740
     ctcattgctt gttctcttta taataacacc attcactcgg ctacaaaact gaagccacgt      4800
     gaggtattcc aaccctctag tattgatgct cctctagata tagacgctat cagaactgcc      4860
     agagataaaa tttatactga aaccacactt caaattgcaa agacccaaaa gcaacaacac      4920
     gattaccata atattggacg agaagagcct cccatccttg atcccgaaca aaccgtttta      4980
     aatcgaacgc agggaataaa gtctaaaact agagaccaat tcgaacaaac taaagtagac      5040
     actgaccgaa acaacaccta taccgacaat cggaatagaa aacttcacaa atctaaactg      5100
     agaagaatca ggaagtgaca accgtcttcc ctgtttcaga tcctgcaatg aatcttgcaa      5160
     caagcgatga catgctggtg atcttatgcc atcagcacct cctcgatatc aaaaacagac      5220
     tccaagcacg tcgaccgttt cgaccaacga aagaagaagc tcgcgcacaa ctccaaatag      5280
     ttgagagact atttgagcta gctgctgggg ctgctgttac ccgaaacatg agaaaaagta      5340
     gcatccgacc catcattcag gtcgttgatg acctcacatt catgctaaac cccccatgcc      5400
     cagatactaa tcatattggc cccgtttaat cttaacctat tcccttcatc ccatacataa      5460
     tcattaataa tggaatataa tattaataca tttttatttt tttaggtaag gatcaagtgg      5520
     aagaatatcc ccacaatata ataatcactt tctaatttta ggcaaacgaa acacggaata      5580
     caatggaaag gcgattcctc catatcatct ctatcctcat catatccatc ctttccgaaa      5640
     acttcatatc ctcacaatcc ctccaaatta ccaacctagc cctaaatccg ggactcttaa      5700
     ccatacaaca aggatatagt cacctgaaaa ttggagaaca taagcttttt catattatta      5760
     atttagaacg ctatgaaccc attttcagaa ggctagatgc caacataaac ggaatagact      5820
     ctttcggaaa tttttcggaa ttaacggacc tcctcaaggc caaattagct gacacttatc      5880
     aaattttctc tgaactccaa cccagatcaa gacatagaag aggacttttt aactttctag      5940
     ggactgggat caaaacaatt acaggcaatt tagatgaaaa tgatctagtg gaaatttcca      6000
     aaaccattca ggaactatct ttcaatacaa aactcctaat taacgagaat aatgaatagc      6060
     aaaagattaa ctttcaattt caggacaggt taaacaaaat tgttaaacag atagaaattc      6120
     agcaaataca aattcaaaag aatttaatag cagctagaaa tcagtcagat aagaaaaact      6180
     tcattgtagt caaagaaacc tttaaaattc attttaatct agactatcta aaatctcatt      6240
     tagaagacat ttttgaagcc gtaaaactag ccaaattgaa agttctttct aaaaatattt      6300
     tatcatctca cgaattagat tttgcaacca ggaaattaga agaaaaaggc gtgatcctta      6360
     acactctaga agaaacatac gattatcttg acttttatgc atttcacaat caatccaaaa      6420
     ttatttttat tatttcaatt ccactattgg aaaacacact ctatgaaaat tttttattag      6480
     aaactttacc agtagggaac aaagttttaa agatccagtc agcccatgcc atgcgaggaa      6540
     accaatcaac gtacatcatc accggcgaat gcaagcgtgt tcaaaagggg aaactttgcg      6600
     atcatggaaa cttaatcaac ataagcagcg acgaatgcat ccctaagcta ttgcaagggc      6660
     aatcgacaaa ttgctctttt accaactgca acaacccgat ggaagtcaaa ctcatcacag      6720
     agaatctcat cgttctgaaa tccgttagag ctctgcaagt taactcatcc tgtggggttt      6780
     caaatagaag tttaaccgga tcatacctct tggagttcca caattgttcg gtatatttga      6840
     acgaatccaa gttcgagaat actgagctta tagaaacaga atcacttaaa gtgttacctt      6900
     tagatggact ttcgatttcc gaaagcaatt ttgaaccaac ctggcatctg gaagaagcac      6960
     acatccacaa tcggagaatt ttagaggact tcaccaaaat tcatcgaaca aggacaaact      7020
     cgtcattcat gttgtccacc ttaagtttct taattgcaat catcatttct gctacagtag      7080
     tttggagaaa aatttctcaa aaactaaggc ccgtatctaa acggccacaa caaatcgcag      7140
     aggaaatcat taagccacat gtatcagcca tcccacaaac acacaagaat cgagacgatt      7200
     cttttcccaa ggaggatct                                                   7219
//
ID   Gypsy-670_AA-LTR repbase;    DNA;    INV; 544 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-670_;
KW   Gypsy-670_AA-I; Gypsy-670_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-544
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-544
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2086-2086 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 544 BP; 187 A; 135 C; 98 G; 124 T; 0 other;
     agttaaggac ccatcctcaa ccatctctga aaggttagat cagtttcacc aacaacaaca        60
     acacatagct acaacgctag atggaattat ccagaattga acccaacacc gggaataact       120
     tcaattagac aacagcacag acaacaacaa caccagatag caacagcaac ggtagaagct       180
     gcccatcggc cacgcacgga acgatgccca tccattcctt cgcgtggaaa accagcgcag       240
     cataaaccat gaaaccagag acttacaccg gacgcgaacc caccgtgaga cgctgacgac       300
     gacgacgacg acagcatggc aggctaggaa cagtgttttg agtcagcagt taatagaatc       360
     aggcttaaac ttcaattatc cattttcaaa taaagaaatt cattccgtct tggtagttcg       420
     tgtcgtgaac aactcgttta gaacaattca gaagtcccta aatccatttc aattcttttt       480
     tccaagttca agtgtaaaat ttagtttttt taaaaagcct tttccgaggc agtaaatcat       540
     aatt                                                                    544
//
ID   Gypsy-671_AA-I repbase;    DNA;    INV; 7073 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-671_;
KW   Gypsy-671_AA-I; Gypsy-671_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7073
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7073
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2051-2051 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 7073 BP; 2646 A; 1427 C; 1119 G; 1881 T; 0 other;
     ggcgcagtcg gcagttctag cgtggagtag ttaaagtgta gtgaaaagtg ttcttatccg        60
     aaatcatcgg cggcttaccg aagagcaaag gaggaaacac ctaaactaca gattctagtg       120
     caccggcggt ttaccgagac accaaaatca tctttaacga agcttcacac ctgctagaag       180
     accatcgaac catccgaggg aatatcggac atcgaaccat ccgagggaat atcggacaat       240
     cgaaccatcc gagggaatat cggacaattt aaccatccga gggaacatcg gataaaaccg       300
     taagtagaat taagcttttt tatataagtg attatcagag tgatttaagt gaatgatcaa       360
     aataacaaaa tataagaaaa aaatatctat tacagtgata gaaaaataat taatttagct       420
     ttttttattt aaaacaaaaa tcttagaaaa cataaattct cttcacctgt attttttttt       480
     accatttttt gaaaggattt ttttttgaaa tcctagaaaa cataaattct cttcacctgt       540
     attttttctt ttttaccatt ttttgaaagg attttttttt taatcaattt taacttcaag       600
     tgtgaaaaat ggcaaagttt gacgagaacc gcgacttgat cactatccaa gtcggggagt       660
     tagaaaccca gatcagagaa ttaataggca taatgcaaca acgcgactct agaatagcag       720
     agttggaagc gttcgctacg caccaacaat caattgcaaa agaagccgct gttgttcagc       780
     aacaaaattc ggtagaaggc gccttgcgag cccttcagac cccccaaatt atcaggatgt       840
     tgccaccatt tgatggtaac cccattaagt tacactcatt cataagatct attgatgatc       900
     ttatgcctga aatttcaaag gtcaagaaca ctccagctta cactgtatgg cttcttgcca       960
     tcagatccaa aattatagga gacgctgaca atgttctaga attttatggc actagcacag      1020
     actgggacga aattaaaaac agtctgatta cacactacag cgacaaaaga gatgaagtat      1080
     ctctcacaaa ggacctgttt aaaattacac aagcggataa ggagattgaa gatttctata      1140
     aggaaataac ttttatgttg tcccttatgg taaatcaatt aaatttaaac gaacacaaca      1200
     gtgacgtaag agccgcgaaa aatctatttt accaggaaat aggcctgaaa gtgtttcttg      1260
     cagggctcaa tgaaccggta ggcactgtca tccgtgctca atgtcccaca tcgttgaaag      1320
     acgctttaag acgatgtatt gaagaaagaa acttttatta tcacaaacaa aaatcttata      1380
     ccccacctgt ccctactagg aacaaatttc aaaacaaatt ttcaaaccca ttttcaagat      1440
     ttcagcaaac tccggtaaca caaaattcgt ttccaagtta cccaatccaa actaatccat      1500
     tccaacgcgt tgcaccaatc caacgtccac aacaactaca gcacacccct caacagttct      1560
     ctccattcca acctcaagta ccatttcaac gtacattttc tcccagtcaa ccaaatcatt      1620
     ctcaaagacc acaacaacct ggcccatcca atccattcaa ccgaaatcct aaccaattta      1680
     gtaaacctcc ttccggaacc tatcgtcctc caaaacccac tccaatggaa atcgaccagt      1740
     cattgagaag tttaaaagta aattatatga atagaccaaa ttttcatgaa gtaaattgga      1800
     cagaaccaat cgattactac ggtcaatata gtgagccatc taactgttac caatatgatg      1860
     caactaatta tgagcaagtt aatatcaata atagttccga agaacaaccc gttactgaac      1920
     cagagggtga taccttaaat tttcagatgg aattgcccga aacaccagaa acatgaacag      1980
     taataatttt ctaccctata taaaaatgaa aactaaattt ggcgaactaa agtttttagt      2040
     tgacactggt gccaacaaga actacgtgga tcctgacaaa attagcacat gttttctgaa      2100
     aaactgtaca cctacaggag tcaaaaatat caatgggaaa cacaacatta acaaatgtgt      2160
     tgaaatcgaa atgtttaacc aaccactaac cttttacgct ttgaaattcc atccatactt      2220
     cgacggactg attggatacg aatcactcag aaatctaaaa gcagaaattt taacctcatc      2280
     taatactctc aaactcccta ctacatcagt taacatgctt cgaaaatacc ccgattcatt      2340
     tagtcgcaat ctaaatgcat atgaagaaat tccattacct ctaaaaacga atgtaccgaa      2400
     tggcgacttt ttcgtcgaac atccacttcc tctaacagac gaagtaatga ttctaccagg      2460
     actctacaca gcaaaagaca acaaagctac agttcttttg aaaaattgct gtgaagttcc      2520
     agtgaaaatc agccctaatc gactcatttt ctctgaattg aataattttg aagtagtgca      2580
     aaaagttgaa aattatgaac ctggatacgt atttgataac acatcaatag atcctagatt      2640
     gaaaaatcag cttcgaatcg accatttaaa catagaagag aagcgaaaat tgatcaattt      2700
     gatttcgaaa tttccaagtg ttttctattt ggaaggtgac aatctaagct ttacgaacgt      2760
     cattaaacat agaatagaaa ccaaagacga tctacccgtt catgcaaaaa gctacaggta      2820
     cccctattgt cataaagagg aggtacaaaa acaagtttct aagatgctgt ctcaaggcat      2880
     catacgtccc agcacgtctc cttggtgctc tccaatttgg atcgtaccaa agaaattaga      2940
     tgcatctgga caacagaagt ggagattagt agtcgactat agaaaactta atgaaaagac      3000
     tatagatgac aaatacccac tacccaacat aaccgaaata ttagacaaac taggaaaatg      3060
     ccaatatttc acaacattgg acctagcatc tggctttcac cagatcgaag ttcacccaga      3120
     tgatatccag aaaacagcct tttccgtaga acatggatta tacgaatact taagaatgcc      3180
     atttggactg aaaaatgctc cagcaacttt tcagcgtgtc atggatcacg tactccgtga      3240
     cctaattgga aaatgttgtc ttgtttatat ggatgacatt attatttttt ctgtttctct      3300
     tcaagaacat attgaaaatt tgacaaaaat atttatggca ttggaaaaag taaacctcaa      3360
     aatacagcta gataaaagtg aattccttaa gaaagaagtg gcatttctag gccatattgt      3420
     gacagataat ggcgttaaac caaatccaag caaaatcgaa gcaattcaaa attggcctat      3480
     ccccaaaaac cagaaagaac taagaggctt tctaggaatt ttaggatatt atcgtagatt      3540
     cgttcgcgat ttcgccagaa taacaaaacc tctcactgct caactgagga aaggcgaaca      3600
     cgtagagcac acagatattt ttttaaaaac attcgttgca tgcaaaaaac ttttaactca      3660
     aagcgatatc cttcaatatc cagatttcga aaaaccattc gtgctaacca cagatgctag      3720
     taattttgct ctaggtgccg ttctatccca aggtgctatt ggacaagaca gacccgtagc      3780
     atatgcgtct agaacattga cgaaaaccga agaaagatat tcagcaatag aaaaagaatt      3840
     attagcgatc gtatgggcaa ctcaatattt tagaccctac ctttttggta gaaaatttac      3900
     attatacacg gatcaccaac ctttaacata cgcactaaac ctcaaaacac ccaatacaaa      3960
     actagttaaa tggcgtctac agttattaga atatgatttt gaaataaaac accgacccgg      4020
     taagcaaaac gttgtcgctg atgctctatc gaggataaca catgatatca acgtgaacga      4080
     agatgattcc gactcagacg actgttcagt gcattctgct gatacagatg actctgaatt      4140
     catcaaatgt acagaaaaac caataaattt ttttcacaac caaattattt taaaaattga      4200
     ccctaacgaa tctgagacat acgaagaaat tttccctcgt gtgtaccgaa gaactattac      4260
     gaaaataaca tttggtgtac cacttttaat tcgaattttg aaagaataca tggatcccag      4320
     acgatcaaac tgcattatgt gtcctgaaaa cgtgatacaa tccttacaaa ttgtatacaa      4380
     aaactatttt agtagatgca aaactttcaa actctgcata tcacaaaaaa ttctcattga      4440
     tctaccaaac ttagaagatc aaaactcaat tatcgaggat acccacgaaa cagctcacag      4500
     aggtattcgt gaaaatctgg aggagataaa aaggagattc ttttttccta atatgaaaag      4560
     gaaagttagg aagtacatca tcctatgtga tacttgtaat aaagcaaaat acgagagaaa      4620
     accttacaaa attaaatttg gtgaaacccc tataccgaaa caacccattg aaattattca      4680
     catagatatc tacatcgctc aaccaaattt gtttttatct gtagtagaca agttcacaag      4740
     gtatggaaca ttaatcccaa taaaatcaag atcaattgcg gatatacgaa aggcgataat      4800
     aaaatacata acactgtacg gcactccaag cttgattgtc tcggataacg aaccagcaat      4860
     taagtccatc gaaattcgag gactactctc agatctcaac atacaacaat attttactcc      4920
     ttcgaaccac agtcaaacaa acggaatagt cgaaagattt cattcgacaa taaccgaaat      4980
     ttttaacgct aataaacaca aatacggtga agtgtcaaac aaagaaaaat ttttaatcgc      5040
     atgttcttta tacaataaca gcatccatac agctaccaac atgaaaccac gtgaaatttt      5100
     atatgcagcc aaaaatggac aggagagacc gatagaaatg gaacgccttg ttgaacttcg      5160
     tgacaagttg tacgacgaag ttcaagtaca actaaccaag acacaaaact cacagaatct      5220
     gtaccacaac aggaagcgag aggatccgcc aaaactaaaa caaaacgaat tggcatataa      5280
     ccgcatccaa ggagtgaagt cgaaaattaa ggaccgctac caacaagtgc gagtacgatc      5340
     taaccggaaa cacacgtaca aagatatcct aagtcgaaaa ttgcataaag aaaaactgcg      5400
     acgaatccga aagtaacacc acagaatctc taatgtgttt tttcatttgt tttctctttt      5460
     tagatgacgt ttatttggaa tatcctgata acaaccacat tccttactca gctatcccaa      5520
     ccacaatcca tccacgtcat taatctcaaa caaaaccccg gtcttttaac catagaaact      5580
     ggcaacagtt ttataaaaat aggcaatcac agattgtttc atatcctaga actggataat      5640
     tacgaaccta tttttagaaa attgcttgct aatatccaag gaatacggac attctcaaat      5700
     tttactgata tgtttgaaat cttagaatcg aaatatggaa ccgttcacag tttattcaat      5760
     aatcttcggc caaagcaaag aaataaaaga ggattattta attttctcgg aactggaata      5820
     aaaagaatta caggaaatat ggaccataac gactatgaac aaatttcgaa aaatattttt      5880
     gaactgcaga tcaagaacaa aagacttatt aacgaaaaca acgaacagct taaaattaat      5940
     ctacaactcc aaaatagaat caattccatt atcaaccgtt taaatcaaca acagagtgaa      6000
     ataactaaaa acattatatc agctagattt gaaaacgaaa ccaacaaaaa ctttaaatta      6060
     tttagagaaa ttttgaaaat caattacaac ttagacaacc ttaaatcaca tttagaagac      6120
     atttttgaat caattcagtt agcaagaact aacattattc ccaaacaaat actttcaatt      6180
     gaagagttag gatttgtttc agatatatta gaagaacaaa acattaggac gaacagttta      6240
     gatcaaattt atgaatattt agaattgtca gcattttata accattcaaa actaatattt      6300
     gttgtgtcaa ttccaaaaat agaaaaagct atgtacacac attttttcct agaacctctt      6360
     ccagtagtag ataaaatttt aaaacttcct gctaatgctg ctttgcaaag cgacaacaga      6420
     acatatttca tcaagaagga ttgcctgcga atcgaaagga caagactgtg caatctaagc      6480
     agcctagagg acattaccgg cgacctatgc tactcaaacc tactaagagg actatcagga      6540
     aactgtactt tcgtaaaatg ctatcaatca acggagatca aagcgatcat ggacaattac      6600
     cttgtcgcta aaaacatcaa taacacagaa atcgaatcga attgtggtct ttcaaaacga      6660
     aacttatctg gaacgtattt gatagagttc cacaattgct ctgtcataat aaatggcacc      6720
     aagttctcaa atgtcgaagc aaacaaatca gaaccgacat ttgttatgcc attagatggt      6780
     ttacatatca atgaacagac cctggaaatc cagaataata tagaagaaat tcacatccat      6840
     aatagacatc ggattgaagc attaactaag gaacacaaaa ttcagacata cacatctcta      6900
     agtatgtcga ccgtatgttt tcttctaagt atcgttgcag gtctttcatg gatttcgaga      6960
     aaacgcagac agatatctct tcatattgga gcatccatgg agtctaaaag caaaccagaa      7020
     attaaacctg agaccagtac aattcgggac gaatcgtctc caaaaggggg agt             7073
//
ID   Gypsy-671_AA-LTR repbase;    DNA;    INV; 413 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-671_;
KW   Gypsy-671_AA-I; Gypsy-671_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-413
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-413
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2087-2087 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 413 BP; 129 A; 108 C; 75 G; 101 T; 0 other;
     agttaagatc gaacccttac cgatcctcaa caatcatcca tacaccaatc gctttattgg        60
     tgtatcatca ttttcatcat tcccggcaac aacaacaaca acgacgacgt ccaccacacc       120
     gacgacgata gcccagctag tagaacggaa acagtagtct agcatcagca tttcatcacc       180
     tgacaacata ggtagcattt acgtggacaa ccaccgaacg agaccactaa acgaagccac       240
     agccctttgg acccgcggca tcagcagttc ttccacagca acagcataag cattgcagta       300
     ggtagtgagg tttgatcgta atcaataatt gaataaaggt tcagttcgtt ttaggcagta       360
     gatcgaataa gttctttttt taaaacttag tctgggtgac acccttcttc act              413
//
ID   Gypsy-672B_AA-I repbase;    DNA;    INV; 7194 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-672B_;
KW   Gypsy-672B_AA-I; Gypsy-672B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7194
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7194
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2039-2039 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 7194 BP; 2963 A; 1139 C; 999 G; 2090 T; 3 other;
     ggcgcagtcg cgtagtaacc ggtcagtgtg gtgaaagtga aagtgaagaa aaaacttaag        60
     cgaaaattaa gtatcaaatc gctggagctg ccactaacga caaaccaact gaagaaaccc       120
     caacgaacat gggacatttt cttctactct tgtaagtaat tttgaatatt taaatgttac       180
     ccaamtaatt tctaacaacc aaatataatm aaaaaagtga atgtttattt tttattaacg       240
     aaagaaaagt gatctgttag ttgtgtgaat gaaagaaaag tgatattttt aagagagaaa       300
     gaaaagtgaa tttatttaat taagcgagaa agtgagtgaa ttttaaaaat tatgaaagaa       360
     gaaaattggg atgatatgaa ccaaccagaa tacattccag atatcgaaaa taaaaagata       420
     atccgtaaaa caccagccaa tttatccaaa aaacagaaaa aagaattcta tgcccgtgaa       480
     acagaacggt gggctcgaat taaacaagaa gaaaaaataa aaataaatcg tgagaaccaa       540
     aaataatttt gtatttgaat agtattataa ttttgtgttt tgtgaatcaa gtgattgtaa       600
     atcaacttcg aatcttgtga aattcaaaat ggctcaaaac ggagaaacac ttgatgctgc       660
     agaaacagcc caaatgtttc agcaagcaga aatagtttta aaatctatgc aaactcctca       720
     agcaattaga gatttgccaa catttgatgg aaaccccgtg aaacttcata atttcataag       780
     atcagtagat aatttatttc ctttcatatc tgcattagaa aatactccat tttttaatgt       840
     ttggttacaa tccattcgtg caaaaattat tggtgaagca gatcagatac ttgaaattta       900
     tggaactcca ttaatttgga atgatatcaa agcaaattta atcgcttact acaacgataa       960
     gcgagactgt gtaactttaa cgcgtgaatt attccaggta caacaaataa ctactattga      1020
     aaaattttat ggacaggttc aaaatttgct ttccctttta atcaacaata caaatatttt      1080
     aattcaggat aatgatttga aaacggacag aattgcgaca cataaggaaa acgcattgca      1140
     agtttttctt gctggtttaa aagagccaat aggtggaaat gttagagcaa ggaaaccatc      1200
     tactttaaaa gaagcttttg atgcatgtgt tgaagaacga aattttcagg ccaaacaagg      1260
     attaaaatca tcacccttct atccttctct tcctaagcaa acaaatcaac ctactttttc      1320
     atattctcaa ccaccaaatc ctagaatgcc tatacaacaa acaagaaatt ttaacgataa      1380
     cattcccaaa ttgcctgttc cmaacagaaa cgtttttgcc ccaaaacctt ttcccatata      1440
     tcaacctaag cctgctccaa tggaagtaga tcgttcaata cgaactaaac gagtaaatta      1500
     tatgaatcga cccaatttaa ataatttcaa accatcatat ccacaacaaa atcgacaaaa      1560
     ttttttccaa caaactggac ctcctaaatt tcatgttgaa gaacttcata atactgaaga      1620
     tccctcagaa tatgaaacat atcatcaaaa taacgacgga tattgggatg ataatattcc      1680
     ttacgaacac tattataata atgaaaatcc atatgaacag ttttatcgct gtcacaatga      1740
     tgaaaaacct attaagaaaa ttgaacaacc aactaataac acttcagaac aaacctcaga      1800
     tcagaaacca aatttagttg ataatctaaa ttttcggacg gtacccaatc aagattcaat      1860
     aacttgaatt gtataccata cttaagattg aaaacaatac aaggattcga cgtgaaatta      1920
     cttattgaca ctggagccaa taaaaattat ctaagtcctc gattagtcaa tagaacagaa      1980
     caactttcct ttccagcact tataacaaat attacaggca aacatgtaat aaacaattat      2040
     gtaaatttta atccatttcc cgaagtcatt caatctacat ttatgtttca tgtatttgaa      2100
     tttcataaat tttttgatgg cctaattggc tatgaaacac tacaacaagt aggagcatta      2160
     attgatgcac aaaataacat attgaatatt tcaggctttc tatacaaatt gtataaaaaa      2220
     tatccagaac ttatttcaat cgaaattcct ggtcaaagca tatgtactat tgaagtccca      2280
     attactgctg aaaatggaga cttctatata gaatatgatt atgaaatttt accaaattta      2340
     ttcatctgtg caggagttta tcgtgcgcat caaaataaag catttataca agtcgaaaat      2400
     agatccattg catcacaata cttttcatta gactttccat tgaaagtaga aataaacaat      2460
     tttcaacaaa ttgacataca taataacatg cattttttaa atggaaaaac tattagtaat      2520
     agatatagga aacttatcga tcaattgaga ctagatcact tgaattccga agaaagaaca      2580
     aaattattag atattatagc agaacatcaa tcagcatttt acgttgaagg tgaaacatta      2640
     tcaaacacta ctgaagttaa acattcaatt tacactaaag acgatttgcc catatatcaa      2700
     aaaagttatc gctatcccca ttgccataga gaggaagtta gcaatcaaat taaaaaaatg      2760
     ttaaaagaac aaattattag accttcaagt tccccatgga attctccagt atggatagta      2820
     cctaagaaaa tagatgcttc tggtcaacaa aaatggagaa tagttataga ttacagaaaa      2880
     ttaaatgcaa aaacaattga tgataaattt ccaataccaa acatcacaga tattctggat      2940
     aaattaggtc gaagtacata ttttactaca ttagaccttg cttcaggctt tcatcaaatt      3000
     gcaatgattg aaaaagacat accaaaaaca gcattttcaa cagacggtgg tcattatgaa      3060
     tttgttagaa tgccgtttgg acttaaaaat gcacctgcaa cttttcaacg acttatgaat      3120
     accgttctta aaggtttaat tggagtaaat tgccttgttt acatggacga tattatcgtc      3180
     tatagtgcag gtttacagga acattacaat aatctagctg cggtattaac agctcttgaa      3240
     aaagcgaatt taaaggttca attagacaaa agtgaatttt tacaaaaaga agttgcattt      3300
     ttgggacata ttgtcaatga agatggtgtt aaacctaatc cagataaaat agaagcaatt      3360
     aagaattggc ccattccaaa aaccgaaaaa gaaattaaat catttttagg aacattaggg      3420
     tactacagaa gatttataaa agattttagc cgacttacaa aacctttgac tcaatgtttg      3480
     agaaaagatg aaaagatcgt gcatacacga gaatttgttg aatcctttga aaaatgtaag      3540
     aaaatattaa ccagtagttc tgtactccaa tatcctgatt tcaataaacc atttaacata      3600
     acaactgacg cttcaaaata tgcaattggc gcggttttat ctcaaggccc aataggaaaa      3660
     gatagaccta ttgcatttgc ttctagaaca ctaaataaac atgaagaaaa atattcaact      3720
     attgaaaaag agttacttgc tatttattgg gcaacaaaat attttagacc ttatcttttc      3780
     ggcaagaaat ttacactgtt tactgatcat aaaccactga caggtgtcat gaaccttaag      3840
     gatccatcaa ctaaaattgc taaatggatg attgcattaa tggattactc ctatgatatt      3900
     caatacaaag ccggaaaaca aaatgttgtt gcagatggct tatcgcgaat tccacatgaa      3960
     ataaatgcac atgatgatgt tgaagacaac gaaatatcat ctaattcaac tacacaacat      4020
     tcagctgata ctgatgattc agaatacatt ccgtgtacag aaaaacctct aaatgctttt      4080
     tcaaaccaaa ttattttaaa aattgaccac aatgaagatg aaaactttga agaagttttt      4140
     ccaaaagtat ttcgtcatac tataacaaaa atcaactttg gaattccttg tttgataaga      4200
     attttcaaaa caaaacttga ttattcacga gttaattgca tttattgtcc agaaaattta      4260
     ataaacactt tacaaatagt ctacaaaaat tatttcagta gaaacagaaa attaagaatt      4320
     tttatctctc aaaagttttt aaccgattta agatactttg aggaacaaaa tgaagtaatt      4380
     gatactattc acaatagagc acatagagga atagatgaaa atcttgcgga aatacaaaga      4440
     aactattatt tccctaagat gaaaaatata attcgtcaat ttattttagt atgcaaagta      4500
     tgtcaaaaag caaaatacga acgacatcct tataaaatta tgttcgctga aacccctatt      4560
     cctaagaaac ctatggacat agttcatata gacattttta tttgtcagcc taatatcttt      4620
     ctttctgcag ttgataaact ttctaaattt ggaatgctca tatcgattaa atcacgatcc      4680
     ataccggata tcagaaaagg tattataaaa ctcatttcga catatggaag tccaaaatta      4740
     attgtatgtg acaacgaacc agcactaaaa tcacctgaaa ttcaaggaat gctattagat      4800
     ctaggaacca acatgtactt cacagcatca aataaaagcg aaatgaatgg aatagtcgaa      4860
     agatttcatt cgaccttaag tgaaatttat agatgcattc aagataaata tgatgacatt      4920
     acaaaaaagg aactatttag aatagcttta tcacattata ataaaacaat tcattcaagt      4980
     acaaatttaa aaccttctga aatatttttt ggaattaaag aaaatgaaga aacaccttta      5040
     aatattgatg atattattac acaaagaaat aaaatttatg atgaagcaat cgttcgttta      5100
     aaacaaaaac agaacacaga tctaacatat cataatagaa cacgcgaaat tgaacctaat      5160
     cttaagccaa atgatgaaat ttatgtcgca cgacaaggtg ttaaaagtaa aattaaaaat      5220
     ccattcactg aagataaagt attaaaagat agaaccaaga catttgaaga tataaaacag      5280
     agaaaattac ataaaacaaa aattaaaaga agaagaaaac cataataagt acgaaacaaa      5340
     ttaaaatatt aagtttatga aaatgcatat ctcaaaatat ttaatcaatt atctttattt      5400
     aggttaaaaa gaggacatca tcaacgcaaa tgatgataat ataaaatatc atcaatgaaa      5460
     atgatgatac attataatat aaaacatcat caatgaaaat gatgatacat cgaaaatatt      5520
     aattaaacgt tttaaaacaa atcatattat aataattatt ataacaaatt agtaacatta      5580
     tttctcattt taggtgtatc cagttagcga tgggaagctt aactatcact gacttaacac      5640
     ggcattctgg tatagctgcg ttcaaagaac ggaaaacaaa aatcattaaa tcatatcatt      5700
     ttcatattca tcaaattgac atagagaaat ttcaaagcaa tataaaaatg tttacgcaca      5760
     ctttgaaact tctcaaacaa aatgacacaa ctactgaata caacgatatt ctcaacgcaa      5820
     gaatggcaag cctcttagaa tcatttcata atttgaaacc tataaaacga aataaacgag      5880
     gaattttaaa ccctcttgga acactcataa aatcaattac cggaaatcta gacgacaatg      5940
     acttaaagga cattcatcat tcattggacc aaacaaagac taaaataaat gaactggtaa      6000
     aaaataatga gaggcaaatt gaaattaata aggaatttga gaataaaatg aatcaaatga      6060
     tcgacagaat taataatcac caaacagtaa ttctaagaaa actttcaaaa tttaataatt      6120
     tggaggaaaa atctagaaac atttatataa agcaacacat tcatgatact ttatttaata      6180
     tggaaacatt agaaaggaaa atgagagata tatttgaatc aattcaattt gcaaaaatag      6240
     gcattttatc aaaaataatt cttaatccaa acgagactaa ttttgcatta gaaaagttag      6300
     aatcacaaaa tgttactata tccacaatag atgaagtata tgaattttta gaaatagaag      6360
     tttttcataa taattcaaag ataatcttta tagttaaaat acctatattt atacaaggaa      6420
     atttcaatta tgtttattat gaaagcatac catataaaaa tcgatcaatc gcatcaaact      6480
     acaacatcgc cattacgagt gaaacatcaa cattcgtcac caaagaacat tgtccaatca      6540
     tcgaacaata tcgtatttgc aatcaacaaa cattgattaa tattacaaaa gatggatgta      6600
     ttcataacgc actttgggga tataatgcaa gttgcccata tacaaaattg gaagattctt      6660
     taaaaattcg acgaatcaac accaatacat tgttagtaat aaacgctatg aatcccatta      6720
     cggtatattc cagttgcgat acggcaaaca gaacaatctc aggaacattt ttaataacat      6780
     tcgacaactg cgtgataaca atcaatgatg aaaattatga ctccagaaaa actattggtt      6840
     atgatgaaac aaagttaatt ccaaccattg gaatcactat caatgaaaca tcatttttcg      6900
     atcatcctga tattttacaa cttcataagt tccatgtcaa aaatcgcaaa cacatcgatg      6960
     aaatacaatt taatcaaaac atcataagga acacaacaat tagtggattt acaatattaa      7020
     taataatatt atgcagttta ggagtctgga tgtatttctc atcaaagaaa aataatgcta      7080
     caacaataaa attaaatatg aatggcctaa aagaatcccc aaaatcatca cataacactg      7140
     aaaatgaaaa aaatcaaccg aagattcgag acgaatcttt tcaaaggggg gaga            7194
//
ID   Gypsy-672_AA-I repbase;    DNA;    INV; 7246 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-672_;
KW   Gypsy-672_AA-I; Gypsy-672_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7246
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7246
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7246 BP; 2963 A; 1139 C; 996 G; 2148 T; 0 other;
     ggcgcagtcg cgtagtaacc ggtcagtgta gtgaaagtga aagtgaaaac ttaagcgaaa        60
     attaagtatc aaatcgctgg agctgccact aacgacaaac caactgaaga aaccccaatg       120
     aacatgggac attttcttct acttttgtaa gtaattttgt ataatatttt cttaacaaaa       180
     taacaaccac tcaatcatca caaaaatttt tagcattaag tttttaggaa aagaaagaaa       240
     aacagtgatt tgtataatta ttaaaagaaa agtgaagttt aatttttttt agaaagaaaa       300
     gtgttgtttt tacagtttta tatttttttt ttgaaagaaa agtgaaattt aatttttttt       360
     tagaaagaaa aagtgttgtt tttatatttt taaataaaat atggaaaatg aaaattggga       420
     taatgtgaat caacctccat atatcccaaa tacagaaaat aaaaaaataa ttcgcaaaac       480
     acccgcacat ctcacgaaaa aacagaaaaa agaattttat gcccgtgaag ttgaacggtg       540
     ggctcgaatt aagaaagaag aacaaattac tcgtaacaat aaaaaataat tttggtattt       600
     gaaaatttta ttttaatatt gattcattta acaaatattt caaaatggct cataatggta       660
     atgcacttga tgcagatgaa acagctcaaa tgtttcaaca agctgaaata gttctgaaat       720
     ctatgcaaac tcctcaagct attagttttt tttttttttt aaatctttat ttgagtgtat       780
     tttaacgcac gagggctagt tctacacttc aagctattag agatttgcca acatttaatg       840
     gaaaccccgt gaaacttcat aatttcataa gatcagtaga taatttattt cctttcatat       900
     ctgcattaga aaatactcca ttttttaatg tttggttaca atccattcgt gcaaaaatta       960
     ttggtgaagc agatcagata cttgaaattt atggaactcc attaatttgg aatgatatca      1020
     aagcaaattt aatcgcttac tacaacgata agcgagactg tgtaacttta acgcgtgaat      1080
     tattccaggt acaacaaata acaactattg aaaattttta tggacaggtt caaaatttgc      1140
     tttccctttt aatcaacaat acaaatattt taattcagga taatgatttg aaaacggaca      1200
     gaatcgcgac acataaggaa aatgcattgc aagtttttct tgctggttta aaagaaccaa      1260
     taggtggaaa tgttagagca aggaaaccat ctactttaaa agaagctttt gatgcatgtg      1320
     ttgaagaacg aaattttcag gccaaacaag gattaaaatc atcacccttc tatccttctc      1380
     ttcctaagca aacaaatcaa cctacttttt catattttca accaccaaat cctagaatgc      1440
     ctatacaaca aacaagaaat ttttacgata acattcccaa attgcctgtt cccaacagaa      1500
     acgtttttgc cccaaaacct tttcccatat atcaacctaa gcctgctcca atggaagtag      1560
     atcgttcaat acgaactaag caagtaaatt atgtgaatcg acccaatttt aataattcca      1620
     aaccatcgta tccacaacaa aatcgaagga attttttcca acaaaatgga cctccaaaat      1680
     tccatgttga agaacttcat aatactgaag atccttcaga aaatgaaaca tatacaaata      1740
     atgatggaca ttggattgaa aataatccct atgagtacta ttatgaaaat ccatctgaat      1800
     acttttatcc atgtcaaaat aatgaaaaac ctatagaaac agttggacaa tcagataaaa      1860
     tttctaaaga aacctcagat cagaaagcaa atttaataga caatttaaat tttcggatgg      1920
     tacccaatca agattcgata acctaaattg cataccatat ctaagattga gaacagctca      1980
     aggattcgac gtaaaactac tcatagatac aggagcaaac aaaaattatc ttagcccgcg      2040
     attagttaat agagcagaac aactaccctt tccagcaact attacaaata ttatgggcaa      2100
     acatgtaata aaaagttatg taaatttcaa cccatttccg gacatcattc aaactacatt      2160
     tatatttcat gttttcgatt ttcacaaatt ctttgatggc ctaattggct atgaaacatt      2220
     acaacaatta ggagcattaa ttgatgctaa aaatagcata ctaaatattt caggttttct      2280
     attcaaatta tataaaaaat atccagaaat tgtttcaata gaaatccctg gtcaaagcag      2340
     gtgtaccatt gaagttccta ctgttgctga aaatggagac ttctatattg aatatgatta      2400
     tgaaatttta ccaaatctat tcatatgtgc aggaatttat cgtgcacaac agaataaagc      2460
     atttatacaa gtggaaaata gatccattgc atcacaatat ttttcactag actttccatt      2520
     aaacatagaa ttgaataatt ttcaacaagt tgatataaat aataaatttt ctaatttacc      2580
     aaatatcaat cataaatata ggaaactcat cgatcaattg aggctagatc atttaaatac      2640
     tgaagaaaaa acaaaattat taaacataat agcagaacat caatcagcat tttatgtaga      2700
     aggtgaatca ttatcaagca ccactgaagt taaacattca atttacacta aagacgattt      2760
     acctatatat caaaaaagtt atcgttaccc tcattgtcat aaagaggaag ttagtaatca      2820
     aattcagaaa atgttgagag aacaaattat tagaccttca agttctccat ggaattctcc      2880
     agtatggata gtacctaaga aaatagatgc ttctggtcaa caaaaatgga gaatagttat      2940
     agattacaga aaattaaatg caaaaacaat tgatgataaa tttcctatac caaacatcac      3000
     agatatactc gataaactag gtcgaagtac gtattttact acattagacc ttgcttcagg      3060
     ttttcaccag attgaaatga atgaaaagga cataccaaaa acagcatttt ctacagacgg      3120
     tggtcattac gaatatttaa gaatgccgtt tggacttaaa aatgcacctg caacttttca      3180
     acgacttatg aataccattc ttaaaggttt aattggagta aattgccttg tttacatgga      3240
     cgatattatc gtctatagtg caggtttaca ggaacattac aataatctag ctgcagtatt      3300
     aacagctctt gaagaagcga atttaaaggt tcaattagac aaaagtgaat ttttacaaaa      3360
     agaagttgca tttttgggac atattgtcaa tgaagatggt gttaaaccta atccagataa      3420
     aatagaagca attaagaatt ggcccattcc aaaaactgaa aaagacatta aatcattttt      3480
     aggaacatta gggtattaca gaagatttat aaaagatttt agccgactta caaaaccttt      3540
     gactcaatgt ttgagaaaag atgaaaagat cgtgcataca cgagaatttg ttgactcctt      3600
     tgaaaaatgt aagaaaatat taaccagtag ttctgtactc caatatcctg atttcaataa      3660
     accatttaac ataacaactg acgcttcaaa atatgcaatt ggcgcggtct tatctcaagg      3720
     cccaatagga aaagatagac ctattgcatt tgcttctaga acactaaata aacatgaaga      3780
     aaaatattca actattgaaa aagagttact tgctatttat tgggcaacaa aatattttcg      3840
     accttatctt ttcggtaaga aattcacact gtttactgat cataaacctc taacaggtgt      3900
     catgaacctt aaagacccat caactaaaat tgctaaatgg atgattgcat taatggatta      3960
     ctcctatgat attcaataca aagccggaaa acaaaatgtt gttgcagatg gcttatcgcg      4020
     aattccacat gaaataaatg cacatgatga tgttgaagac aacgaaatat catctaattc      4080
     aactacacaa cattcagctg atactgatga ttcagaatac attccgtgta cagaaaaacc      4140
     tctaaaagct ttttcaaacc aaattatttt aaaaattgac cacaatgaag atgaaaactt      4200
     tgaagaagtt tttccaaaag tatttcgtca tactataaca aaaatcaact ttggaattcc      4260
     ttgtttgata agaattttca aaacaaaact tgattattca cgagttaatt gcatttattg      4320
     tccagaaaac ttaataaaca ctttacaaat agtctacaaa aattatttca gtagaaacag      4380
     aaaattaaga atttttatct ctcaaaagtt tttaaccgat ttaagatact ttgaggaaca      4440
     aaatgaagta attgatacta ttcacaatag agcacataga ggaatagatg aaaatcttgc      4500
     ggaaatacaa agaaactatt atttccctaa gatgaaaaat ataattcgtc aatttatttt      4560
     agtatgcaaa gtatgtcaaa aagcaaaata cgaacgacat ccttataaaa ttatgttcgc      4620
     tgaaacccct attcctaaaa aacctatgga cacagttcat attgatattt ttatttgtca      4680
     acctaatatt ttcctatctg caattgacaa actttctaaa tttggaatgt taattccaat      4740
     aaaatcacga tcgataccag atataagaaa agggattaca aaattgattt cgacatatgg      4800
     ttgtccaaaa ttgattgtat gcgataatga accagcacta aaatcacccg aaattcaagg      4860
     aatgttatta gatctaggta ccaatatgta tttcacagca tcaaataaaa gtgaaatgaa      4920
     tggaattgtc aagagatttc attcaacatt aagtgaaatt tatagatgta ttcaggataa      4980
     atatgaagac atcacaaaaa aagaattatt tcgaattgca ttagcacact ataataaaac      5040
     aattcattca actacaaatc tgaaaccttt tgaaatattt ttcggtatta aagatggtga      5100
     agaaagatca atggatattg atgaaattat aatccacagg aataagattt atgatgaagc      5160
     tattataaag ttaaaacaga aacaaaatct agatttaaga tatcataaca aaaaccgtga      5220
     aattgaacca tgtttaaacc ctaatgatga agtttatata gcaagacaag gaataaagag      5280
     taaaacaaaa gatccattta ataagaatac agttaaaaca gatagaagaa aaacatttga      5340
     agatattaag aatcgaaaat tacataaaac aaaaattaaa agaataagaa aaccatgatg      5400
     gtgatggaac aaataaaaaa ataacattta tgaaattatt aatatgaaaa gatttattaa      5460
     ttatgttttt attccattta tttagatctt agaaggaaat gtcatcaacg caaatgatga      5520
     tacatccaaa acacgaaaca tcatcaatga aaatgatgat acatcggaaa tgcttacaaa      5580
     acacttcaaa ccaaataata ttttaatcat tactacaaaa tcttttattt ttattttatt      5640
     atagatggat accatttacc atgggaacgc taaccatcac tgatttagcg cggcacccag      5700
     gaataatcgc tttcaaggaa cgggaagcaa aaatcataaa atcataccat tttcatattc      5760
     atcaaattga caccgagaaa tttcaaagta atatcaaaat gtttacccac actttgaaac      5820
     ttctcaaaca taacgacaca acacctgaat acaatgacgt tcttaacgca agaatgataa      5880
     gcctcttaga atcataccag aatttgaaac ctttaaaaag aaacaaaaga ggaattttga      5940
     accctcttgg cacaatcata aaatcaataa ccggaaattt ggataacaat gacttgaagg      6000
     acatacaaca atcattcgac aagactggaa ataaaataaa cgaactcata aagaataatg      6060
     agaggcaaat tgaaattaat aaggaatttg aattcagaat aaatcaagta atagattaaa      6120
     taaataatca ccaattagaa atattaagaa aactttccaa acttaataat ttagaagaaa      6180
     attataaaaa cttttatata agacaacata ttcatgatac tttgtttaat atggagttat      6240
     tagaaagaaa acttagggat atatttgaat caattcagtt cgcaaaaata ggcattttat      6300
     caaaaacaat tttgaatcca aatgaaacta gttttgcatt agaaaaactt gaacaacaga      6360
     atgttgaaat aaaaacaata gatgaagttt atgaatttct cgaaatagaa gctttccaca      6420
     ataattcaaa aattattttt attgtaaaaa tacctatctt tttgcaagga aagtatagtt      6480
     atgtcaatta tgaaagcata ccactcaaca accgaacaat tgcatcagat tataacatcg      6540
     ccataacaaa cgaattgtca acattcgtta caaagaaaca ttgccaaatc atcgagaagt      6600
     atcgaatctg tcagtataac gcaatactta atataacaca tgataaatgc attcataata      6660
     cccttaatgg atataatgct aattgtccgt atactcaata caaagaacca tataaaatca      6720
     aacaaattaa ttcaaatatg ttacttgtaa aaaatgctat tcaaccagta actattaact      6780
     caacgtgtga aacagcaaat agaacaatta ctggaacatt cttaattact ttcgacaact      6840
     gtataataac aatcaacaat gaacaatacg acgccagaaa aagtattggt tatgatgaaa      6900
     caaagttaat tccaaccatt ggaattgcaa ttaatgaaac atcattcctg gatcaacccg      6960
     atattcttca actatacaaa tttcatataa aaaatcgcaa acacgttgat gaaatacaat      7020
     ttcatcaaaa tatcattaga aatacaacaa ttagtggatt cacactacta ttaatactac      7080
     tatgcagttt aggagtctgg atgtatttct catcaaagaa aaataatgct acaacaataa      7140
     aattaaatat gaatggccta aaagaatccc caaaaacatc acataacact gaaaatgaaa      7200
     aaaaatcaac cgaagattcg agacgaatct tttcaaaggg gggaga                     7246
//
ID   Gypsy-672_AA-LTR repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-672_;
KW   Gypsy-672_AA-I; Gypsy-672_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-662
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-662
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2088-2088 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 662 BP; 240 A; 147 C; 118 G; 157 T; 0 other;
     agttaacggc ttatccatgt aaaggattac cacaactcac gtatcctagc attaaatcat        60
     aaacaaccta atgattcact tatgaatcac ttatgaaatg aaagcagatg cgtaattgcg       120
     caatctggag attgtccgta aacaaaacca taaataactc attatgcgct tacgcgacac       180
     actttcagta aacatcccag attcctagat cgaattccag atcaaaccca taaataatct       240
     accatgtgac atatttcgaa gaaacatcca agaggaatgg aaatcatcac aggcaatatg       300
     gttcacaaca atgattgaca ctctatttac acacccgcaa gttcccgatc atcaaaccat       360
     cgatcccagc ataggaagga ccgtgaccat gaatcatcat cgcaagcgga tcaacaggca       420
     gatcaacaag tgacgataaa gaaagcattg ttcttcgaga cgaaaagcag aaccgtttga       480
     cgactacgcg tgggaaattg catcagcaga aacgacgcca ccacattagt atgctttcaa       540
     ggccaagggc caattgaaga ttataaaaac catttgccaa ttaggaatag agtcagttgt       600
     atcatagaat tagaagtgtt ttagtttttt aaaaagaact ccacccgctc ggggagttaa       660
     ct                                                                      662
//
ID   Gypsy-673B_AA-I repbase;    DNA;    INV; 7128 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-673B_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7128
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7128
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2171-2171 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other. The middle part
CC   of consensus is ~94% identical to that of Gypsy-673_AA-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..1702
FT                 /product="Gypsy-673B_AA-I_1p"
FT                 /translation="MPETRKQRANFNSIPEESPFLDENENVQTNREQQIVN
FT                 LQQEMARLAQQLELMGVNADSNSPRANTPAAEVAVEEVVKSLQTPAIIRDL
FT                 IPFDGNPIKLNQFLKAVDRVMPVLKQVEQTPTFNLWMQSIRSKIVGDADTI
FT                 LELYGTNLDWDEIKSNLISHYSDKRDEVSLTRDLFKLTQTTTVQQFYENVS
FT                 HIISLLINQLMINESDASVKLAKQRFYQEMGLKVFVAGLKSPIGPIIRAQA
FT                 PRTLKEALRLCIEESNYSNLQHLSKPVSPSIQNTGAIPKPYSLQARQYYPQ
FT                 PIQQNSQFNFPPPSNNRFPYQQKVNTSPFSKPPLPQQQQRSFNNLPPQQQR
FT                 PFNNPPPQQQRPVNNFSRPGSAYYRRPQLGQIPNFHLEQESACQMPEINEY
FT                 YYYDETSHNEYDPSHNEIRYNHQQNDAEYDAQLFQMQHQQPAIQSETQDDL
FT                 NFHAVDESNPTT"
FT   CDS           1663..5163
FT                 /product="Gypsy-673B_AA-I_2p"
FT                 /translation="FKFSCGRRIKPDDVKNNNFIPYITFNTSKGELKLLID
FT                 SGSNRNYLATKHVNFEKCRITQPTTVRNVSGSHVIDRFVEFNPFPNIPNTS
FT                 KQIFLIFDFHPFFDGLIGYETLKNLKADIITSSNKLRFPSGEVPMKRKYPD
FT                 VKSVYLNAHETKPVDLTTKSVGDFFLDRDLTIDPNCFIHSGLYRAENGYVK
FT                 IFLTNRSSEPCRITLTADVLEMEVNNFECSTPDVPHNINPVERNALFDQLR
FT                 TDHLNADEKHKLLKIISRHSGVFFLKGERLSFTNAIKHSIKTKDESPIHTK
FT                 SYRYPFCHREEVKRQIADLLDQGIIRASNSPWTSPVWIVPKKLDATGTRKW
FT                 RLVIDYRKLNEKTIDDRYPIPNITDILDKLGRCMYFTTLDLASGFHQVEVE
FT                 EKDIPKTAFSVENGHYEFLRMPFGLKNAPSTFQRVMDNVLREHIGVICLVY
FT                 MDDIIVFSTSLTEHLDNLAKIFKTLEKHNLKVQLDKSEFLKKEVAFLGHIV
FT                 TSEGVKPNPDKIQIIREWPLPSNEKELRGFLGILGYYRKFIRDFAKIAKPL
FT                 TNALRKGEEITHSKEFVDAFERCKGILSSSNILQYPDFSKPFILTTDASNF
FT                 AVGAVLSQGQIGSDKPIAFASRTLNKSEEKYSAIEKELLAVVWACKYFRPY
FT                 LYGRKFILYTDHKPLTYGLNLKDTNNRLVHWRLSLSEFDYEIRYRPGKQNA
FT                 VADSLSRIRNEHYNELNVNENDSSDDDDAESLNTIHSAGTDNSDLIKSTEK
FT                 SVNEFCNQIVLKIGPDSTDNYEEIFPKIFRRTITRMVFGVPIIFKIFKDYM
FT                 DLKRTNCIYCPESVMHVVQTTYKNHFSRAKAFKIFTSEKLLIDLRSIEEQN
FT                 LILEQTHDRSHRGIWENHQEILRRFYFPRMKFKVREYIKLCETCHKNKYDR
FT                 HPYKVALGSTPRPERPLDIVHIDIYIAEKTCFLSAIDKFSRYGSLIHIKSR
FT                 NILDLRKGLTKYFKIFGTPRKIVCDNEPSLRSIEIRGLLHDLGVEVFFIPP
FT                 NHSESNGLVERFHSTINEIFRCIKPAFESLTTKEILNIACTQYNNTIHSSI
FT                 KLKPREAFYGLKDDQERPLQIEKIVESRNKLYDEIMLAHDKSNKRALDYHN
FT                 INREPPPDLNPDQVAYNKIQGIKKKTKPMYSPVTVVDNKGRVFIDDNGREI
FT                 HKDNVKRV"
FT   CDS           5549..7126
FT                 /product="Gypsy-673B_AA-I_3p"
FT                 /note="env."
FT                 /translation="SNNNIFNIFTESLKTRNNMTPFPLPIAILTFFIIKPS
FT                 LSSIQIHDITNNAGALLLQKGEGRIIDGHDRLLHVIDFAQFEISLSIIERL
FT                 VRDMPQNSSQFNEIIKAKLSEIRSIYNTLNIPRVRSKRAIELLGSAVKFIT
FT                 GNLDAEDLKIINSNLEELKKNGNTYVKQNNRQIKINSKFENRLDLINKQIR
FT                 DQENLIRKIYNQENSNFSENKQILLTLQLDSFLEKLKSIEYAIMLAKVNIV
FT                 NPLILTAKEKFAIIQEITGQGLEINNLDDANSYLTTTVIHKRSSVIICVNI
FT                 PRLLPVSFRRITMEPLPRLNKTVKLVHRDVFKSQHRILAITSPCQESDKVT
FT                 ICERRQLVEIGDQLCEAPLLRGEFGHCPMLEKTPITETKLIAPGTLLVITV
FT                 HQDVNINSTCGIDTRSLSGIHLIIFHNCSLSVNNQLFENYELWFDHPIIHP
FT                 ILPNNIGVSSIERNINLTELENLHFQNRERLELVDFKHNVGFASLSSSVII
FT                 IIALLAFVILKYRIISRTSNCSGRAILKGG"
XX
SQ   Sequence 7128 BP; 2523 A; 1474 C; 1281 G; 1850 T; 0 other;
     ggcgcagtcg tgcggatttt tgaagaaatt ttgtgtcggt acgttaccat tcgcgagtga        60
     atatcgtgta attagtgcac aaaaatcttc ggaaatcctg aacctatttc tctccactta       120
     tctcttcgca ctcaccaata gtgttttccg tcatcgcgac atcgacgaga gcaaatcgcc       180
     gatctgtgga agcacaggta agtgactttt tgaattttta tctatcctat tatttctaac       240
     atttacaaaa accttccgaa aactaatcaa gtgtgaaagt gatcgagtga cagcaaatag       300
     agtgatagtg atctagtgtt agtgattgaa aatgcctgaa acaaggaaac aaagggcaaa       360
     ttttaacagc atcccagagg agtcaccgtt cctcgatgag aatgagaatg tacagaccaa       420
     cagagagcaa cagatagtca acctccaaca ggagatggct agactggcac agcaactcga       480
     gttaatggga gttaatgccg atagcaatag cccacgagca aacaccccag cagctgaagt       540
     ggcagtagag gaagtcgtga aaagcctcca gacaccagcc attatcagag acctgattcc       600
     cttcgatggc aatcccatca aattgaatca atttctaaaa gcagtagaca gagtaatgcc       660
     tgtcctaaaa caggtcgagc agacacctac gttcaatcta tggatgcaat ccatacgatc       720
     aaaaattgta ggcgatgccg atactattct agaattatat ggtactaatc tcgattggga       780
     cgagattaaa agcaatttga tatcccatta cagcgacaaa cgggacgagg tttctctcac       840
     gagagatctt tttaagttga cgcaaacaac tactgtgcaa caattttacg aaaacgtttc       900
     acacataata tccttactta ttaatcaact aatgatcaat gaaagtgacg ctagcgttaa       960
     gctggcaaag caaagattct atcaagagat gggactaaaa gtcttcgtag ctggattgaa      1020
     aagccccatt ggaccaatta tcagggcaca agcccctcgc acactcaaag aagcattaag      1080
     gctctgtatc gaagagagca attatagtaa cttacaacat ttatcaaaac cagtttcacc      1140
     tagcatacag aacacaggtg ccattcccaa accatattca cttcaagcaa ggcagtacta      1200
     cccacagcct atacagcaaa actctcaatt taattttcct cctccttcaa ataatagatt      1260
     tccttaccag caaaaagtga atacttctcc attttcgaaa ccacccctac cgcagcaaca      1320
     gcagcgatca tttaataatc taccaccaca acagcaacga ccgtttaaca atccaccgcc      1380
     gcaacagcag cgaccggtta acaatttcag tagaccaggc tctgcttatt acagacgccc      1440
     acaattaggt caaattccaa actttcacct agaacaagaa tcagcatgtc aaatgcccga      1500
     gataaacgaa tattattatt acgacgagac gagtcataac gaatacgacc cgtcacataa      1560
     tgaaattaga tataaccatc aacaaaatga tgcagagtat gatgcacagc tatttcaaat      1620
     gcaacaccag cagcctgcca ttcagtcaga gacgcaggat gatttaaatt ttcatgcggt      1680
     cgacgaatca aacccgacga cgtgaaaaat aataacttca tcccatatat cacgtttaat      1740
     acttccaaag gagaattaaa attactaatc gattcaggca gtaatagaaa ctatctagcg      1800
     acgaaacacg tcaattttga aaaatgtagg attactcaac ctaccacagt gagaaacgtc      1860
     agtggatctc acgtgattga tagatttgtc gaattcaacc ctttcccgaa tataccaaac      1920
     acttctaaac aaatttttct cattttcgat ttccacccgt tctttgatgg cctcataggt      1980
     tatgaaacat taaagaactt gaaagccgat attattacgt cctcgaataa gctcagattc      2040
     ccttcaggtg aggtacccat gaagcgtaaa tatcctgacg tcaaatcagt atatttaaat      2100
     gctcacgaga ccaaaccagt ggatctaacc accaagtcag ttggagattt ctttttggat      2160
     agagatctca caattgatcc aaattgcttt attcattcag ggttgtatag agcagagaat      2220
     ggatacgtaa aaatcttttt aaccaatcgt tcttccgaac cttgcagaat aactttaact      2280
     gcagatgttc tggaaatgga agtcaacaat tttgaatgca gtacccctga cgtaccacat      2340
     aatattaatc ctgtagaaag aaacgcttta ttcgatcagc ttaggactga ccacctaaat      2400
     gctgacgaaa agcataaact tttaaagatt atatcacgac atagtggtgt attcttcttg      2460
     aaaggggagc gcctttcatt tacgaatgcg attaaacatt cgataaaaac gaaagatgaa      2520
     tcacccattc acacgaaatc ttatcgctac cccttctgcc atagagaaga ggtaaagcgt      2580
     cagattgctg atcttttaga tcaaggtatt attagagcct ctaatagtcc ttggacttca      2640
     cccgtgtgga tcgttccaaa aaagttggat gccacaggaa cccgaaaatg gcgattagta      2700
     attgactatc gcaagttgaa tgagaagacg atagacgatc gttatcccat tcctaacatc      2760
     acggacatac tcgataaatt gggtcgatgt atgtatttca cgactctcga tctcgcatct      2820
     ggtttccacc aggtggaagt cgaagagaaa gatatcccta agacagcatt tagtgtcgaa      2880
     aatgggcact atgaattttt gaggatgccc ttcggactga aaaacgcgcc ctcaaccttt      2940
     cagcgtgtaa tggataacgt cttgagggaa cacattggtg tcatctgtct tgtgtacatg      3000
     gatgatatca ttgttttctc aacgagccta acggaacacc ttgacaatct ggcaaaaata      3060
     ttcaagacat tggaaaaaca caatctgaag gtacaattgg acaagagcga attcctcaaa      3120
     aaggaagttg cctttttggg ccatattgta acctcagaag gcgtcaaacc aaatccggat      3180
     aagatccaga ttattagaga gtggccgttg ccttcgaacg agaaagaact gcgtggtttc      3240
     ctaggaatct taggatacta tcgcaaattt ataagagatt ttgcgaaaat cgcaaaacct      3300
     ctcacgaacg ctctaagaaa aggagaagaa attacacact cgaaagaatt cgttgacgct      3360
     ttcgaaaggt gtaaaggtat tttatctagt agtaacatac ttcaataccc cgacttttct      3420
     aagccgttta tactcaccac tgatgcttca aactttgcag tgggtgcagt attatctcaa      3480
     ggtcagatag gaagtgataa gccgatagct ttcgcttccc gtacactaaa caagtcagaa      3540
     gaaaaatact cagcgataga gaaagaacta ttggctgtag tatgggcttg taaatatttc      3600
     cgcccctatt tgtatggcag gaaatttatt ctttacacag accataagcc tttgacttat      3660
     ggactaaact taaaggacac caataacagg cttgttcatt ggcgtctttc acttagtgag      3720
     tttgattacg aaattcgcta ccgtcctggt aagcagaatg cagttgcgga cagcttgtcc      3780
     agaattcgta acgaacatta taacgaactc aatgttaatg aaaatgactc ttccgacgat      3840
     gatgacgcag aatctttaaa taccatacat tctgctggta ctgataattc tgatcttatt      3900
     aaaagtacag aaaaatctgt taatgaattt tgcaaccaga ttgttctaaa aatcggtcca      3960
     gattcaacag ataattatga agaaattttc cctaaaatat ttagaagaac aattaccaga      4020
     atggtctttg gagtaccaat aattttcaaa atttttaagg attacatgga tttaaaaagg      4080
     acgaattgca tatactgtcc tgaaagtgta atgcacgttg ttcaaacaac gtataaaaat      4140
     catttcagta gagcaaaagc tttcaaaata tttacctccg agaaactact gattgatctc      4200
     agaagtattg aagaacagaa tctcattttg gaacaaaccc atgatagatc tcaccgaggt      4260
     atatgggaga accatcagga aattcttaga cgtttttatt tcccaagaat gaagttcaaa      4320
     gtacgagagt acatcaaact ttgtgaaacc tgtcataaaa acaaatatga cagacaccct      4380
     tacaaggttg cactgggttc taccccgcgt cccgagagac cactggacat agtgcacatc      4440
     gacatttata ttgcagaaaa aacatgcttt ctttctgcaa tagataaatt ttcacgatac      4500
     ggatctctaa tccatatcaa atccagaaat attttggact tgagaaaagg tctaacgaaa      4560
     tattttaaaa ttttcggaac acctcgtaaa attgtctgcg acaatgaacc atcactaaga      4620
     tccattgaga tacgtggact tctccatgat cttggtgtag aagtattttt tattccacct      4680
     aaccacagcg aaagtaatgg attagtggaa agatttcatt caaccattaa tgaaatcttc      4740
     aggtgtatca agccggcatt cgaaagtttg accacaaagg aaattttgaa tattgcttgt      4800
     acccagtaca acaataccat acactctagt atcaaactta agccaagaga agctttttat      4860
     gggctaaagg acgaccaaga aaggcctctc caaatagaaa aaatcgtgga atccagaaac      4920
     aaactttacg atgaaattat gctagcgcat gacaaatcga acaagcgtgc tttagactac      4980
     cacaacataa atagagaacc gccaccagat ttgaacccag atcaagtagc ttataataaa      5040
     atccaaggca ttaagaagaa aacaaagcct atgtattccc cagtcactgt cgttgacaat      5100
     aaaggcagag tctttattga cgacaatggt cgagaaatac ataaggacaa tgtaaaacga      5160
     gtttaattaa catttttttt tataatttca gaatgaataa ggatttaaga aatagatttc      5220
     tatttagctt gtgcgttgca caaataaaca atctttacga gtctcttcgt aaaagcacaa      5280
     cggaatattc aacggaagca gaatcagcat ggctctcatt agccgaccac ctcatggcaa      5340
     tggcctgcgg ggcagcagtg gaaagtggca tcgacaggga gtcaaccgac cccttggtta      5400
     ccctcatgga taatctgcgc ttgtgtctca agcaaaaaac gcgcagtcac gtaaattttc      5460
     aaaaaaaaaa aaaaaaaaag gaccctttca ttagagggga tataaaaaca aacaaacaaa      5520
     aactacaaaa aaaaaataaa taaaataatc taataataat atttttaata tctttacaga      5580
     atcactgaaa acacgaaaca acatgacgcc atttccatta cccatagcca tcctcacgtt      5640
     tttcatcatc aaaccctcac tttcatcaat acaaattcac gacataacga acaacgcagg      5700
     agcgttgctt cttcaaaaag gggagggaag aattatagat gggcacgata ggcttctcca      5760
     tgttattgat tttgctcagt tcgaaatttc actgtcgatt atagaacgtt tagtaagaga      5820
     tatgcctcaa aattcaagcc aatttaatga aataattaaa gcaaaacttt cagaaataag      5880
     atcaatttat aacacattaa acattccaag agttaggagt aaaagagcca tagaactatt      5940
     aggaagtgca gtaaaattca ttacaggaaa tttggatgca gaggatctta aaattataaa      6000
     ttcaaacctc gaagagttaa agaaaaacgg aaacacctat gtaaaacaaa ataatcgaca      6060
     gataaaaatc aattcaaaat tcgaaaacag gttagattta attaacaaac aaatcagaga      6120
     tcaagaaaat ttaattagga aaatttataa tcaagaaaac tcaaactttt cagaaaacaa      6180
     acaaatcttg ttaaccttac aattagattc atttttggaa aaacttaaat cgatcgaata      6240
     cgccatcatg ctagctaaag ttaacattgt aaatcctctc atcttaacag ctaaggagaa      6300
     atttgctata attcaggaga ttacaggtca gggactagaa atcaataacc tagacgacgc      6360
     caacagctac ctgacgacaa cagttataca caagaggtcg tcagtcatca tctgcgtaaa      6420
     catcccgaga ctactcccag tctcattcag aagaatcacc atggaacccc tacccaggct      6480
     caacaaaaca gtcaaactgg tccaccgaga tgtattcaaa agtcaacata ggatcctcgc      6540
     aataacctcg ccatgccaag agagcgacaa agttacaatt tgcgaaagga gacagctcgt      6600
     agagatagga gaccaacttt gtgaagcacc acttcttaga ggagaattcg gacattgtcc      6660
     aatgttggag aagacaccga taacagagac caaactaata gccccaggaa cattattggt      6720
     gataaccgtt caccaagacg taaacatcaa tagcacctgc gggatcgata cacggtcgtt      6780
     atctggaatt cacctaataa tatttcacaa ctgttcacta tccgtgaaca atcaactttt      6840
     cgaaaattac gaactttggt tcgatcatcc catcatacac ccaatactac caaacaacat      6900
     tggagtatct agtattgaga gaaacataaa tttgacagaa ctggaaaacc tacatttcca      6960
     aaacagggaa cgtctagagt tggttgactt caaacacaat gttggatttg catcactcag      7020
     cagcagtgtc atcatcataa tcgctttgtt agctttcgta atcctcaagt atcggatcat      7080
     atcgaggaca agcaattgct cgggacgagc aatacttaaa gggggagc                   7128
//
ID   Gypsy-673B_AA-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-673_AA-LTR; Gypsy-673B_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-341
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-341
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2174-2174 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus. The consensus is ~93% identical
CC   to that of Gypsy-673_AA-LTR.
XX
SQ   Sequence 341 BP; 99 A; 77 C; 86 G; 79 T; 0 other;
     agttaagcgc ggatcttcgc catcacactt gactggcaaa acatgcgctt ccacggaacc        60
     agcgccgaca tgcacccaga caccgaagtc agcaacattc ttcaagaatg aaaccggaga       120
     caacggacga ccgatggaac cgaccagagt gaacaacgtg accggaggcc catcgtcagt       180
     aggtgcaagg ttaacagttt tagggaagaa ggcaggccag ctagggtttt aagattgaat       240
     aaaccggcag tccgttcgtg gcagtctgtt cgtgtagttc taagttgtgt agtgatatta       300
     atttttttaa aaagacttcc ctgatgtggt aacttttaac t                           341
//
ID   Gypsy-673_AA-I repbase;    DNA;    INV; 7206 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-673_;
KW   Gypsy-673_AA-I; Gypsy-673_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7206
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7206
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 7206 BP; 2533 A; 1494 C; 1311 G; 1868 T; 0 other;
     ggcgcagtcg tgcggatttt tgaagaaatt ttgtgtcggt acgttaccat tcgcgagtga        60
     atatcgtgta attagtgcac aaaaatcttc ggaaatcccg aacctatttc tctctaccta       120
     tctcttcgca ctcaccagaa gtgttttccg tcatcgtgac atcgacgagg gcatatcgcc       180
     gatctgtgga agcacaggta agtgactttt ttcaattttt atctatctac ctctcatctt       240
     actgtaaaaa taacctttcc aaaaaactac aactaactaa gtgacaagtt aaaagtgata       300
     gttttaagaa gtgttaacta gaaagtgaaa aaaaaaaaac cccgaccgag aaaatgccag       360
     acactagaag caaggcaatg gctcccgttg aggaggagcg ttttatcctc gctcatgagg       420
     atggggaagc tgctggagct accacgaacg aacggtttgc tcgctcaagc gaagggtctt       480
     cccttcagac agagcataca gcaacaatcg ctgcactgga gcgagagatg gcccgcatct       540
     ctgcccagct gactcggctc agcataggcg cagcgaataa tgccgtcagc aatggcagca       600
     tcgatcgtaa tgtgacgtct gaagaggatg ttctaaagag cctccagact ccatctagcg       660
     tgagggattt aacaccgttt gacggtaatc ccctcaagct tcaccaattt ctgaaggcag       720
     ttgatagagt aatgcctatc atggaaaggg tgaaaaattc tccaaccttt gatgtttgga       780
     tgcaagccat ccgttcaaaa attatcggag aagcggacac cgttctagag ctgtatggta       840
     cagaactaga ttgggacgat ataaagacca atctcactgc acactacagt gataaaagag       900
     acgaagtctc gttatgtatg gacctgttcc aattaaaaca ggaagggtca tttcaaaatt       960
     tctatgaaaa ggttacccat attatatcac ttttagttaa tcaactcttg attaacgaaa      1020
     gcgatccaaa tgtcaaattg tctcgacgaa attattacca agaaattggt ctaaaagttt      1080
     tcgtcgccgg tcttcgacca ccactaggtc caacaattcg ggcacaaaaa cctaaaacac      1140
     taaaagaagc acacagattt tgcttggaag aaggcaatat ctcgtatgtg caaaacctag      1200
     ggaaggcaat gtctggtgca atacccaaac agttgccctc acaaattcca aaaccaccat      1260
     ttaggcatcc gattccccgg caagaatttc aaaggaaacc cccttaccaa ggaggttaca      1320
     acccgaatcc ccatcaagcg gttaatcgct atgcagaccc cacacagcga aacggcccat      1380
     accaagagag tcctaaaaca aacaacaatt tccaaccttc ttacacccag catcccagca      1440
     atcagtctca tcaaattccc aagcatcagc ctaagccttt taacaagttc ggtcagaaag      1500
     ccagaacaga accttatctt agacctaact tccacgtgga agatgaaact tatcaggaat      1560
     tttatgacga ggagcaatac tattatgacg acggtgatta tgagacacaa cagtgttata      1620
     tgacaccctc gcagaattcg caaaacgaat gtacacaatc tcagcaacaa gctgaatcgc      1680
     gtgatgcctc agcatccttc caccaagcca ccacccctga aatagacgac ttaaattttc      1740
     atatggtggg cgagcgaaaa catataacat aaacaaaaat aattttattc cctacgtcac      1800
     aatcatgact agtaaagggg aattaaaatt attgatcgat tctggcagta acagaaatta      1860
     cctgtccagc aatcatgtta atttaaataa ttgtcggagt tgcgcaccga caactgttag      1920
     gaatgttaaa ggaaaccaca caattaatcg atttgtggag tttaatcctt tccccgaaat      1980
     tccaaacact ttgaaacaaa catttcttat atttgacttc catccgtttt tcgatggcct      2040
     tatcggctac gaaaccttga aaaatctgaa agcggatatc attacttcct cgaacattct      2100
     caaatttccc gcaggaaaaa ttacgatgaa acgtaaatat cctgacgtga aatcaatttt      2160
     tttgaactcc catgaaacta cgtcagtgaa tttaagcacc aatgcaactg gcgatttttt      2220
     cctgaaagaa gatttggtca ttgactctta ttcatttatt cactctggtt tatacagagc      2280
     tgaaaatgga tacgtcaagg taatggtgag caattcctca tcagaacccc ataaaattga      2340
     cttaaccccg gaccttttag aaccggagat taataatttt gaatgtggcc ttcctgacga      2400
     gaatccgcca attctaaaga aagagctgtt cgagcaactc aggcttgatc acctcaattc      2460
     tgatgaaaaa caaaatcttt taaaaatcat agaaaaacat agtgacttat tcttcataaa      2520
     aggggaacaa ctttcgttta cgaatgcgat aaaacactcg ataaaaacga aagatgaatt      2580
     acccatttac acaaaatctt atcgctaccc cttctgccat aaagaagagg taaagcgtca      2640
     gattactgat cttttagatc aaggtattat tagagcttct aatagtcctt ggacttcacc      2700
     cgtgtggatc gttccaaaaa agttggatgc cacaggaacc cgaaaatggc gattagtaat      2760
     tgactatcgc aagttgaatg agaagacgat agacgatcgt tatcccattc ctaatatcac      2820
     ggacatactc gataaattag gtcgatgtat gtatttcacg actctcgatc tcgcatctgg      2880
     tttccaccag gtagaagtcg aagagaaaga tattcctaag acagcattta gtgtcgaaaa      2940
     tgggcactat gaatttctaa ggatgccctt cggactgaaa aacgcgccct caacctttca      3000
     gcgcgtaatg gataacgtct taagggaaca cattggtgtc atctgtcttg tgtacatgga      3060
     tgatatcatt gttttctcaa cgagcctaac ggaacacctt gacaatctgg caaaaatatt      3120
     caagacattg ggagaacaca atctgaagat acaattggat aagagcgaat tcctcaaaaa      3180
     ggaagttgcc tttttgggcc atattgtaac ttcagaaggc gtcaaaccaa atccggataa      3240
     gatcctgatt attagagagt ggccgttacc ttcgaacgag aaagaactgc gtggtttcct      3300
     aggaatctta ggatactatc gtaaatttat aagagatttt gcgaaaatcg caaaacctct      3360
     aacgaacgct ctgagaaaag gagaagaaat tacacactcg aaagaattcg ttgacgcttt      3420
     cgaaaggtgt aaaggtattt tatctagtag taacatactt caaaaccccg atttttctaa      3480
     gccgtttata ctcaccactg atgcttcaaa cttcgcagta ggtgcagtac tatctcaagg      3540
     ccagatagga agcgataagc cgatagcttt cgcttcccgt acactaaaca agtcagaaga      3600
     gaaatactca gcgatagaga aagaactatt ggctgtagta tgggcttgta aatatttccg      3660
     cccctatttg tatggcagga aatttattct atacacagac cataagcctt tgacttatgg      3720
     actaaactta aaggacacca ataacaggct tgttcattgg cgtctttcac ttagtgagtt      3780
     tgattatgaa attcgctacc gtcctggtaa gcagaatgca gttgcggaca gcttgtccag      3840
     aattcggaac gaacattata acgaactcaa tgttaacgaa aatgactctt cagacgatac      3900
     tcctacggat gatgattcag acgatgatga cgcagaatct ttaaataccg tacattccgc      3960
     tgatacagat aattctgatc ttattaaatt tacagaaaaa cctgttaatg aattttgcaa      4020
     ccagattatt ctaaaaatcg gtccagattc aacagataat tatgaagaaa ttttcccgaa      4080
     aatatttaga agaacaatta ccagaatggt ctttggagta ccaataattt tcaaaatttt      4140
     taaggattac atggatttaa aaaggacgaa ttgcatatac tgtcctgaaa gtataatgaa      4200
     cgttgttcaa acaacgtata aaaatcattt cagtagagca aaagctttca aaatatgtat      4260
     ctccgagaaa ctactgattg atctcagaag cattgaagaa cagaatctca ttttggaaca      4320
     aacccatgat agatcccacc gaggtatatg ggagaaccat caggaaattc ttagacgttt      4380
     ttatttccca agaatgaagt tcaaagtacg agagtacatc aaactttgtg aaacctgtca      4440
     taaaaacaaa tatgacagac atccttacaa ggttgcactg ggttctaccc cgcgtcccga      4500
     aagaccacta gacatagtgc acatcgacat ttatattgca gaaaaaacat gctttctttc      4560
     cgcaatagat aaattttcac gatacggatc tctaatccat atcaaatcta gaaatatttt      4620
     ggacttgaga aaaggtctaa cgaaatattt taaaattttc ggaacacctc gtaaaattgt      4680
     ctgcgacaat gaaccgtcac taagatccat tgagatacgt ggacttctcc atgatcttgg      4740
     tgtagaaata ttttttattc cacctaacca cagcaaaagt aatggattag tggaaagatt      4800
     tcattcaacc attaatgaaa tcttcaggtg tatcaagccg acattcggaa gtttgaccac      4860
     aaaggaaatt ttgaatattg cttgtaccca gtacaacaat accatacact ctagtatcaa      4920
     acttaagcct agagaagctt tttatgggtt aaaagacgac caagaaaggc ctctccaaat      4980
     aaaaaaaata gtggaatcca gagacaagct ttacgatgaa attatgctag cgcatgacaa      5040
     atcgaacaag cgtgctttag attaccacaa cataaataga gaaccgccac cagatttgaa      5100
     cccagatcaa gtggcttata ataaaatcca aggcattaag aggaaaacaa agcctaggta      5160
     ttccccagtc actgtcgttg acaataaagg cagagtcttt attgacgaca atggtcgaga      5220
     aatacataag gacaatgtaa aacgagttta attaacattt ttttataatt tcagaatgaa      5280
     taaggattta agaaatagat ttctatttag cttgtgcgtt gcacaaataa acaatcttta      5340
     cgagtctctt cgtaaaagca caacggaata ttcaacggaa gcagcatcag catggctctc      5400
     attagccgac cacctcatgg caatggcctg cggagcagca gtggaaagtg gcatcgacag      5460
     ggagtcaacc gaccccttgg ttaccctcat ggataatctg cgcttgtgtc tcaagcaaaa      5520
     aacgcgcagt cacgtaaatt ttcaaaaaaa aaaaaaagga ccctttcatt agaggggata      5580
     taaaaacaaa caaacaaaaa ctacaaaaaa aaaatatata aaataatcta ataataatac      5640
     tttaaatatc tttacagaat cactgaaaac acgaaacaac atgacgccat ttccattacc      5700
     catagccatc ctcacgtttt tcatcaccaa accctcattt tcatcaatac aaattcacga      5760
     cataacaaac aacgcaggag cgttgcttct tcaaaaaggg gagggaagaa ttatagatgg      5820
     gcacgatagg cttctccatg ttattgattt tgctcagttc gaaatttcac tgtcgattat      5880
     agaacgttta gtaagagata tgccccaaaa ttcaagccaa tttaatgaaa taattaaagc      5940
     aaaactttca gaaataagat caatttataa cacattaaac attccaagag ttaggagtaa      6000
     aagagccata gaactattag gaagtgcagt aaaatttatt acaggaaatt tggatgcaga      6060
     ggatcttaaa attataaatt caaacctcga agagttaaag aaaaacggaa acacctatat      6120
     aaaacaaaat aatcgacaga taaaaattaa ttcaaaattc gaaaacaggt tagatttaat      6180
     taacaaacaa atcagagatc aagaaaattt aattaggaaa atttataatc aagaaaactc      6240
     aaacttttca gaaaacaaac aaatcttgtt aaccttacaa ttagattcat ttttggaaaa      6300
     acttaaatcg atcgaatacg ccatcatgct agctaaagtt aacattgtaa atcctctcat      6360
     cttaacagct aaggagaaat ttgctataat tcaggagatt gcaggtcagg gactagaaat      6420
     caataaccta gacgatgcca acagctacct gacgacaaca gttatacaca ggaggtcgtc      6480
     agtcatcatc tgcgtaaaca tcccgagact actcccagtc tcattcagaa gaatcaccat      6540
     ggaaccccta cccaggctca acaaaacagt caaactggtc caccgagatg tattcaaaaa      6600
     tcaacatagg atcctcgcaa taacctcgcc atgccaagag agcgacaaag ttacaatttg      6660
     tgaaaggaga cagctcgtag agataggaga ccaactttgt gaagcaccac ttcttagagg      6720
     agaattcgga cattgtccaa tgttggagaa gacaccgata acagagacca aactaatagc      6780
     cccaggaaca ttattggtga taaccgttca ccaagacgta aacatcaata gcacctgcgg      6840
     gatcgataca cggtcgttat ccggaattca tctaataata tttcacaact gttcactatt      6900
     cgtgaacaat caacttttcg aaaacttcga actatggttc gatcatccca tcatacaccc      6960
     aatactacca aacaacattg gagtatctag tattgagaga aacataaatt tgacagaact      7020
     ggaaaaccta cattttcaaa acagggaacg tctagagttg gttgacttca aacacaatgt      7080
     tggatttgca tcactcagca gcagtgtcat catcataatc gctttgttag ctttcgtaat      7140
     cctcaagtat cggatcatat cgaggacaag caattgctcg agacgagcaa tacttaaagg      7200
     gggagc                                                                 7206
//
ID   Gypsy-673_AA-LTR repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-673_;
KW   Gypsy-673_AA-I; Gypsy-673_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-341
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-341
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2089-2089 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 341 BP; 104 A; 73 C; 85 G; 79 T; 0 other;
     agttaagcgc ggatcttcgc catcacactt gactggcaaa acatgcgctt ccacggaacc        60
     agcgccgaca tgcacccaga caccgaagtc agcaacattc ttcaagaatg aaaccggaga       120
     caacggacga ccagtggaac cgatcagagt aaacaacgtg accggaggcc catcgtcagt       180
     aggtgcaagg ttagcagttt tagggaagaa ggcagaccag ctagggtttt gagaatgaat       240
     aaattaacag tctgtttgtg gctgtcggat cgtgtagttc taagttgtgt agcgatgtta       300
     aattttttaa aaagacctcc ctgatgtaat aacttttaag t                           341
//
ID   Gypsy-674_AA-LTR repbase;    DNA;    INV; 403 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-674_;
KW   Gypsy-674_AA-I; Gypsy-674_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-403
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-403
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2090-2090 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 403 BP; 132 A; 93 C; 71 G; 107 T; 0 other;
     tgtagtgtac atatttaaac acttacacgc tttacccgcc ttaccaaatt gttatgctta        60
     cgcatacgat acattgtatc gaggcaccac gccacggcaa gtacaactcg actgcaattg       120
     atcggctgcg tagggcaagg tccaatccgc gaattatcga tttgtttgtc acgctgacct       180
     cagcatacgc gctccagaag gcttcccata agtcttaagc aaattcaata atgtaacctc       240
     aagccgtgca acattcttgc acgatataaa aaccgcctga atcaaataat acaaacagtt       300
     caattcggtc ttcggaccaa gtaatccatt gttataatta aatgagatat cacatccgtt       360
     aaagtagaca gaagaaagat ttcaataaga gtgattcagt ata                         403
//
ID   Gypsy-675_AA-I repbase;    DNA;    INV; 4288 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-675_;
KW   Gypsy-675_AA-I; Gypsy-675_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4288
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4288
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (25-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4288 BP; 1167 A; 989 C; 1163 G; 969 T; 0 other;
     tagttttggc gacgaggatg caaggtaacg aaattccggt cgattgcgct ggaaatgcgc        60
     gaaattccgt tcctcctggc gcaggtggaa ggaatccagc agaagaagtt cccgtcggag       120
     cgccaggtgc tgcgccctat gctgctgctg tggcctcagt cgcgatgcag tctactttta       180
     ccgtcgagcc gtttgatcgc cataagatta aatggtctcg ctgggtggag cggctggaag       240
     gtgccttttt gcttttcgga gtacgagttg aggcaaagct gccgatgctc ttgcactaca       300
     tgggagccga aacatatgac gtagtttcgg acaaaatggc acccgaaaaa ccacagacga       360
     aaacctacga tgaggtggtg cagattctgg agaaccactt caatccggaa ccgctcgaga       420
     tcttggaaaa cttccggttc aaatgtcgca agcaaggcga cgatcgtgct gaggaatcaa       480
     tcgacgatta tctcattgcc ttgaggaagt tggccataac ctgcaatttt ggcaactact       540
     taagcactgc gctgcggaac cagtttgttt ttgggatcaa ggaccgagga atacaggcgc       600
     gcctgctgga ggtgcgcgga ctcacactgg atcgtgcccg gtagattgca gtatcgatgg       660
     aagcatcggc caaaggcgga caggagatcc attcgcgtca agggaaaccg gagttgaacc       720
     tcgttgagca tctgccgaac aagtattcga aggggaagaa aaataagaag agcgttgttc       780
     ctgcgaagaa agtgagtgca caagcgcaca gtgatgcgaa gaagggggag tgttttcgtt       840
     gtggcagccc tacacacttc gcaaacaaat gcccgcatgc gaaaacaacc tgcaactact       900
     gcagagtggc aggtcatctg cagaaagttt gcctgaaacg gattgcggca gaaggtgccc       960
     gaagaaaaag tgatgctcat caggtggagc aaagtgtcgc aaatagaaac tgcaaagaaa      1020
     gtgtgcatac cgatgagatt tgcggtgtat acgatgcagc cgatttcaat aacagtgtgg      1080
     ataaattctg gctgcagctc tcggtgaata gtgcgacggt gaaattcgag gttgacagtg      1140
     gatccccggt ttcgatcatg agtgtgtcgg accagcaaaa gtactttccc acagtagaat      1200
     tgcatcaccc tgacactgct ttggtgagct acagtggaaa catgattgag ctgtgtggaa      1260
     tgtgtgctgt tcgtgtgaaa tacggtggac aaaattacga aatgttgctg tacgttgcga      1320
     agaataagaa acacccacta ctcggacgta gctggatgaa agtgctgaaa atcgatgtaa      1380
     acaagtttta cgaaaacgtc cacgcgatcg cgattgataa tagtgccgaa tcagtgaaga      1440
     agctaataga gcgttatgcc aatgtgtgtg agaaatccat gggtaaaatt gaaggactca      1500
     cagcgaatct gcgactgaag ccagatgtgc gaccggtgta tttgcgtgcg cggccggttc      1560
     cgttctctat ccgagacgcg gtcgaagaag aaattaagaa tttggagaag aacggtgtgt      1620
     tagtgaaggt taaccacagt gcttgggcga caccggtagt cccagtaata aaaacgaata      1680
     atcgagtgcg actttgcggt gattataaga tcacggtgaa tccaaatctc gtggtcgatg      1740
     aacaccctct gcccaccgtc gaggagcttt tcgctaatgt ggcaggtggt gaaaagttta      1800
     cgaagattga tctctcgcaa gcatatatgc agctggaggt tagtccagag gatcaggaga      1860
     ttctcacact gagcactcat ctgggactgt acaggccgac gaggctgatg tacggagtca      1920
     gttcagcccc agcaatctgg caacgtttaa tggaggaggt actgaatggc attccaggtg      1980
     tgacggtttt tctggacgac attcgcataa caggacctaa cgaccaggtc catctgcaac      2040
     ggctggaaga agtactgaag cggctaagcc aatacaacat gcggatcaac ctggacaagt      2100
     gtcagttctt tgctgaccaa atcgaatact gtggctacat gattgatcga aacggaatcc      2160
     ataaggtgaa gaagaaggtt gatgccattc agaacatgcc cgcgccgagg aacaaggagc      2220
     aagtccgttc atttgttgga ttggtcaatt attacggtcg tttcttcccg catttgagta      2280
     cgaccatcta cccgttgaac cgtttactac gaaacgatgt ggcgttcctg tggacgaagg      2340
     aatgcgagga tgccttttcg aaggtgaaga acgagatgca atccgaccgg ttcttggtac      2400
     actacaatac ggagttacca ttggttttgg cgaccgatgc gtctccatac ggggtcggtg      2460
     cagtgctcag ccacatcatg ccggacggta cagagcgacc aatcatgtac gcgtcgaaga      2520
     cactgaacga cactcagcgc aggtacaagc agatcgaccg tgaagcatat gcaatcatct      2580
     ttggagtgcg gaaattttac caatacttgt acggacggaa gttctggctg gttaccgaca      2640
     atgagccagt gaagcagata ttctcggaaa ccaagggttt gccggcaatg tcggcactac      2700
     ggatgcagca ctacgcggcg tttctcgcgt cgttccgcta caccatcaag tttcgtccga      2760
     tgaaggagca ttacaatgct gacgcttttt cccgtttgcc ggttagtgag aagacaccgg      2820
     acaatgttat cgaggaggtt gacctgctcg aagtcagcat aatcgagacg ctaccgttga      2880
     cggtcgacga tctcgcgaag tcgactactg ctgattctac ggttcaagtg ctactgcaag      2940
     gtctgaagaa tgggaaaacc gtcgatgccc gcgatcggtt tggaatcgat caaaatgagt      3000
     tcgctctaca aaaaggatgc attatgcgtg gaattcgggg gtacgttcca ccaaatttgc      3060
     gacagaaggt gttaacggaa ctgcacatca cgcactttgg gacaacgcgt ttgaagtcac      3120
     ttgccagagg atacgtctgg tgggagcgaa tcgacaagga catcgagaag gttgttcgga      3180
     actgcgcggc ttgtcagatg acacgccctg atccagtgaa agtgccccta cactgctggg      3240
     aaacgccgaa ggaaccattt gagagagtcc atgtagactt tgccggtcca tttatgggta      3300
     cgtatttcat tgtgtttgtt gatgcctaca caaaatggcc ggaagtaaag attttgcgag      3360
     atatcactac aagcactacc attcatgcgt gccgtgaatt ctttgcttcc tacgggattc      3420
     ctgctgtgct cgtgagtgat cacggcgtac aattcacgtc gactgagttc caaaggtttt      3480
     tgaaactcaa tggaatcttt cacaaaatgg gtgcgccata ccatccggcg accaacggac      3540
     aggctgagcg tttcatccaa acgttcaaaa ataaaatgaa agctctcaat tgcgacaagt      3600
     cgagaatgca ttcggagctc tgtaacattc tactcagcta ccgaaaaacc attcacccag      3660
     ctaccggaaa atcgccttcg atgatgctgt tcaacaggca aatccggtct cgacttgacc      3720
     tgatgattcc gaacgctgct gctacaacgg agaaaccaga tgtttgcacc aaatcgctcg      3780
     cggaggggac gagagtcgct gcccgtgatt atttggacaa ggaaaagtgg aaatacggtc      3840
     acgttgatga gaagctgggt aagcttcatt acaacatcaa gctggatgac ggtcgaatct      3900
     ggaagcgcca tatcgaccag gtacgggaag tgggtgcaaa cctacctgca cgtcctgagc      3960
     tgcccacacc ccgtgttgaa atcgatacag ttccagctac tctgcgaagt gatggcccag      4020
     cacagacaac acacactact atgtcgtcgt cggtacctgc ggcaaacccg attgctgaat      4080
     cgcaaacaag gccgcaacca tcgacgagca cttcggcggt gcctaggctg aacgtaccac      4140
     ctgcggtatc cgatccaagg ccgcagatcc ctgctgtgag tgctgagccc aactatcagc      4200
     agtcaccacg acggtcttca aggatcatca aaccgcctcg gagactcaat ctgtaaagct      4260
     aagtatacat tcccaagggg agaagagt                                         4288
//
ID   Gypsy-675_AA-LTR repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.04, Created)
DT   25-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-675_;
KW   Gypsy-675_AA-I; Gypsy-675_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-234
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-234
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2091-2091 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 234 BP; 65 A; 54 C; 33 G; 82 T; 0 other;
     tgttatacct ttaccttaaa tgccacacac tgaattactg gcaaccctat ataatcctac        60
     catgttgatg ttatgataac cttgattttc tttgtctcat tctccccgcc aatgaatcag       120
     ttattctatt gtatcgtcac aagtaaccac gcgaataaaa atggctatcg agtttgttct       180
     ttagttccgt gtgttttacg actataatcc ggaaaactac tctcggctac aata             234
//
ID   Gypsy-676_AA-I repbase;    DNA;    INV; 6992 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-676_;
KW   Gypsy-676_AA-I; Gypsy-676_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6992
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6992
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2052-2052 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6992 BP; 2728 A; 1513 C; 1138 G; 1612 T; 1 other;
     ggcgcagcct aacggtgttc gtgaagaaga ttgtgaaaaa aacagtgctt ttttcgattc        60
     gtaaattgaa aaacagtgat cccgcgagag catttatcgt tacttgagaa gaacgataga       120
     gtagaggatc cgccgctcac tatcggacca cgaacggacc gcagcacgac tagcaaggta       180
     agtgatttta tttttattac tttcatgttc caagtgaagt gagaataaga agatagagtt       240
     gctaacctgc ggcaattaca attttatcat acacgtcgaa gcgatccaag cgaaacgcaa       300
     acggtgtaac tgtgtaaatt gttcttgctt cagaaaattg aaacggttct aagagaattt       360
     ttttcatttt tcaccggaac ttgtgacgtt ctaagagaga tcacagtttc gcctcaattt       420
     gacgagttct aagagaacgt caattgaaac ccattaactt ttactactta gtggaggaaa       480
     aggtggagtt taaaacacta actcgcgatc atcaagtacc cacacaacaa tttatttcat       540
     ggtacaatac tgtgaatgaa gaaacataac aagaaaactc tctccgcgtt gcaagcaact       600
     aggaaaatat ttcaacgcaa cgatattagt gatactgagt cgagtgacga atctgacgak       660
     tcacaagaaa acagtcacgt ccccctaaaa aattacatcc catcagtaga aggtattcca       720
     ttagacgaaa acgaaggcat ggaggcttta aaccagcaac ttgccctcat tatggagcaa       780
     ctacaaacac ttaacgcaaa ccagcaacac cagcagcagg ccattgaaaa tttacagaat       840
     gcaccacccg cagccgatgc ggcaccgacg ttaaatcaaa acgcaagagg cataaacctc       900
     gatcatttat acaaaatacc ggacccaatt aagtccctgc ccatctttga tggaaatcga       960
     aaacaattat cagcctggct gacaacagcc gaaaacacat tgctcctatt taagaaccat      1020
     gtcgatgaca tactttataa tatgtacgtc accgcagtgg ctaataagat acagggtaaa      1080
     gccaaggaca taatttgtct ggccggaaac ccgcaaacgt ttgacgaaat caaagacatc      1140
     ctaactacag cactgggcga cagacaagaa ctgtcgactt ataagagtca attgtggcaa      1200
     caccatatga cagatggtat gagcattcac cgttactaca ctaaaacaaa agaaattatg      1260
     caaaacatca aaacccttgc aaaacaaaaa gacaactaca ggaaacactg ggaaggtata      1320
     aatgaattca tagaggagga tgtactagct gctttcatag caggattatc tcacccttac      1380
     ttcggtcacg cacaggccgc cagacccaaa gacctagagg acgcctatgc cttcctatgc      1440
     aaatttaagg caaaggaaat tacagcaaat atcatcagtg aatcaaataa aacccagaaa      1500
     ccttttagga ccaacaatca taaacaattt aacagtgact tccagggtaa agacaaatat      1560
     gaagggaaaa aatctttaaa ctcatgctcg caagagaaga atgaagataa aaagttttca      1620
     aatacacact cccaaccaat ggacgtcgat aactctgtga gaagtcgttt gacactcaac      1680
     aaaagacaaa tcaataataa tgaagcaagt caatcagatg atagcgaaga agaaatagat      1740
     ctaaattttc aacaggaatt caatccggaa gatccgatat aaattactta ccatatatcg      1800
     tgatgaatat tccaaacagt aaacaacagc tcaaactact tattgacaca ggagctaata      1860
     aaaacataat tgatcccggc atactacaaa atacatataa agttaagaag atgaccatta      1920
     aaaatataaa cggaacaaac caaatttcac agaaaggaaa attagatatt tttcctggta      1980
     cttctaagcc tctaacgttc tacgaactga actttcacga ttttttcaat ggaattctgg      2040
     gatcagaatc attggctaac ctgagagcaa aaattgacta tgaaaaagag atgctcttgc      2100
     tcagcaacaa aaagataaaa tttagtaaat attatccatc caaaccgaac tttaactatc      2160
     aaacaataac aataaacaca tcgaatgacg gggattggct cgtacccaca tttcaaaaac      2220
     tcaatgggaa tactctcata caaccaggcc tatacagagc agaacgtgga aaatcaacta      2280
     tcaaaatcat aaatactaaa gaaaccccag aacccctacc aaaatttaga ttgacggtta      2340
     ataattttga agcaatttcc ccaatacctg ttagcaccga aaataacctt aaccaagata      2400
     ccatcaaaga cctcattcgt actcaacacc tttcaaaact cgagagagac gaattgatat      2460
     catgtatctt gaaacatcaa caagtccttc tgaaaaataa tgaaaaactc acctctactg      2520
     ttggaattaa acacaaaata aacacaaacg ataatgaacc ggtatacact agatcataca      2580
     aatacccaca ccattttaaa aaagacgttg aaacccaaat aaaagaaatg cttgaaaacg      2640
     gaattattcg ccactctacc agcccatatt catcgcccat atgggtcgta cccaaaaaac      2700
     aagatgcatc cggcaaacga aaagtacgag ttgtcatcga ctatcgtaag ctgaatgaca      2760
     aaacaattaa cgataaattc ccaatcccac aaattgagga catattagac agcctgggta      2820
     agtcagaata cttcaccacg cttgacttaa aatcagggtt ccatcaaatc gaaatggacc      2880
     caaaacatag agagaagacc gctttttcta cggctcaagg gcattttgag ttcacgagaa      2940
     tgcctttcgg cctaaagaac gcacccgcga cttttcaacg cgctatgaat aatatactag      3000
     gagattatat cggtcgaatt tgttacgttt atctagacga tataattatc attggttaca      3060
     acctcaagaa ccaccttgaa aacatcgaaa aagttctgaa gagactctcc gacttcaacc      3120
     tcaaaatcca attagataag tgcgaattct taaaaaaaga aacggaattc cttggacatg      3180
     tcattagctc agacgggatt aaacccgacc caacaaaaat aaacaaaatt ttagactgga      3240
     aactccccac ctctcaaaaa gaaattaaac aattcctcgg actgacaggg tattacagac      3300
     gtttcataaa aaattacgca aaactagcca aaccactaac taaatttttg aaaaaggaca      3360
     ccccgataaa cgtgaatgat gaggaatata aaaaagcatt cgaagaactg aaacttattt      3420
     taacctccga tcaagtatta gcttatcctg attttgaaat accattcatc ctcacaaccg      3480
     acgccagcaa ctatgcccta ggcgcagtat tatctcaaat tcaaaataac accgagaaac      3540
     ctatagcatt cgggagtcgc accttaagta acactgagga aaactactca actacagaaa      3600
     aagaggcatt agccataatg tgggccgtgg agaagtatcg accatacctc tttggaaaca      3660
     agttcgttct tgtcaccgac cacaaacctt tgacattcat aaaatcctca gtaaaaaact      3720
     caaaaatatt aagatggcgt ctagagttag aaaactttga ctacgaagtc aagtacaagg      3780
     agggcaaagc aaacgtcgta gcggatgcct taagtaggaa aaacaaagaa accaatacaa      3840
     acgaaattaa tatagctcat ctcgttccag gtacaagtcg gatggaaaac aacccaccaa      3900
     cggaatatga cgacatcaac agcaatagct gtacgatcaa ttcaaacgaa actaactcag      3960
     gtccccccat ttcagatgca aacctacaag acaataacct ccacacagaa aacgacgata      4020
     tcgaagacga ttccaacgcg ctgcacgcag cagaagattc cgatacaaac caacaagaca      4080
     acaatcctca gtcggaaaac gatgacaatg aagattccaa cacagttcat tcagcagaag      4140
     attccggtga taattacatc cattttacag acaaacctat caattattac agaaaccagt      4200
     tgatttttag aatatctaac attaccaccg ttatcagcga aacactattt cgaaactatc      4260
     atagaaccat aatctcacaa ccaaattacg ataattcaga catggttcat tatctaaaaa      4320
     ccttccacaa tgggaaacaa tcagctatac tagcaccaga aaatttactt ctaataatac      4380
     aagaagtttt taaagaaaac ttcaatcaga aaggtcactt catattctct acatgcatag      4440
     tagaagacgt ccaaaacgaa aaacgacaaa atttattaat tataaacgaa catgacagag      4500
     cgcatagagg cattaacgaa atcgaagcac aacttaaaag atcatatttt ttcccaaaaa      4560
     tgtacaaatt aatacgcaac tatgtaaact catgtaaaat atgcaatgct cataaatacg      4620
     agcgaaaacc ttataacata aagatctctc cacgccctgt aacagaaaaa ccattagatc      4680
     gtgttcacat ggacatcttt ataatcgatc actgtagttt cttatctctt atagattctt      4740
     tctctaaaca ccttcagatg ttttacttga aatccaaaaa cattattcac gttcaaaaag      4800
     ctcttggaaa atacttttcc tgttttggtg tcccagcaac aattgtaacc gatcatgaaa      4860
     caacatttcg ctctatacaa attaggaatt ttttagctca attagggtct aacctggaat      4920
     acgcatcttg ctcagaatcc aacggtcaaa tcgagcgtac acactctaca ataatcgaaa      4980
     ttttcaacac caataaacat aaattcagag gcatgcatac aagatctgta atcaaattgt      5040
     cgatcgcact ttacaacaat tcagtgcact cctcaactaa attcatacca aacgaaatct      5100
     tgttcaaccg taacaacata aggaatccag aagaagtttt aggcaacgcg cagaaaatat      5160
     ttctagaagc tcagatgaat ttgaaaaaag cccagaacaa ccaaaccaaa caaaattcaa      5220
     gcaaagaaga ggcaccacaa ctggacgaaa atcaagaagt atttgttata cccaatattc      5280
     gtaccaaaag tcaaccccga gcaatacaaa caacagctcg taatataaca gaaaaaacat      5340
     tcaaaaatac acaggacact aaaagacata aacgtaaaat taaaagacta aaaaaacatt      5400
     aaattgaaag attactcata accaattgca atgttatcgt tacagatgta tacaacagtc      5460
     attataatat ttctcttatc atgtatcaga ggacaagaac tggaaattaa gaagttgagt      5520
     gacaacccag tactactact caaaacagga gaatgctgga tccaaaccgg atcaatcaga      5580
     gttatacacc caatcaatct aaccacaata gaatcgaacg tactccaaat gagtaaaata      5640
     gcaagacagt tagacagcaa tcaaccgatt tcgcagctgg tcatacagaa aagtagggca      5700
     ctaattaaca acttgcgaca agtaaaacct attcagctca ggagacaacg acgttgggac      5760
     agcctaggaa cagcgtggaa gtggctagcg ggaaacccag acgcagatga cctgcgaatt      5820
     atcaacaaaa caacgaacag cctgatcgac gaaaataaca aacaagtaaa agtaaacgaa      5880
     atggttaaca acagaatggc ggaaatggca gatgcaatca acacgctaat cgaacatcaa      5940
     aatttagaaa acaaagtctt attggaagag tacgattctt taaccctgct actctacatg      6000
     gacacaacga acaaaattct ggaagagata caggatacca taattaaaac gaaaattgca      6060
     ttaccaaaca gcaaattgtt aacacttcat gaaatcttac taattgaatc gctaatgcat      6120
     gaacagggaa tccttacaca gtttcctgaa gaagcactag aatacgtgga acccaaaata      6180
     gcggtgaaga acgatctgtt gctgtacata cttcaagttc ctaaattaca aaaagcacct      6240
     tcagaagtta ttcaaattat acctctgatt gtaaacgacg caatgatcta caacctgcca      6300
     caacgaatta taaaaactga caatgcattt ttcgtaacaa acaaaccaga tgatttgatt      6360
     caaagaagct ccgaattaag acttgtgacg gataaatgcc tcaatggaat catgaatggc      6420
     agagcaagtc actgcaacgt agtgaaagag aacaacacct acataaactt aatatcggat      6480
     aacaaaatcc tcatcaacaa cgcgagacac agcaatatca gttcaacatg tggaccagac      6540
     aataggacat tgacaggaaa ttttatcgtt acattctcca actgtaacgt agcgattggc      6600
     ggagaactgt ttacagcaaa agaagtaatt agcaacaata ccaaagagat ccagggagca      6660
     tttccaaacc tctggattaa ccgtagcatg attgaagtcc ataacatgtc aacgctaaca      6720
     gaacatgcaa tttttaccag gaaacaactg caactaatgc acttacaaca ataccctcac      6780
     agtcaatgga tttttggaac attaggagga ctatccgtaa cctcaatcac cattttcctg      6840
     ctcataactt acatctgcat ccgcaagaag aaagttacca tcagaatcaa gcaatacgga      6900
     cctaagaata aacaacctaa cccggattca acaagccaac cagagaaggc gcatattaag      6960
     gacgaggacg tcctttcttt accccccgga gg                                    6992
//
ID   Gypsy-676_AA-LTR repbase;    DNA;    INV; 272 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-676_;
KW   Gypsy-676_AA-I; Gypsy-676_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-272
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-272
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2092-2092 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 272 BP; 80 A; 58 C; 64 G; 70 T; 0 other;
     agttacggca caccagggtg ccacatcatc aacggcatgc accaaaggtg cttagtcaac        60
     acatagccac cacgcgcagc gaccaatgca gaggatccag cacgggacac gcggcagctg       120
     ttaggaatta cttggtcagc aattagtagg agttaaaaga gttgtgacca ctgtgattcg       180
     tttcagttag ttttcattta ttgataggta acaaccagtg cattgaataa agtgtttttt       240
     aaaaaggtaa tcacggcctt tatctcgtga tt                                     272
//
ID   Gypsy-677_AA-LTR repbase;    DNA;    INV; 280 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-677_;
KW   Gypsy-677_AA-I; Gypsy-677_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-280
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-280
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2093-2093 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 280 BP; 93 A; 60 C; 55 G; 72 T; 0 other;
     agttacacgg agcccgacgc cacgtggata accaggtcag cagttatcat cgaaccactt        60
     cgagaactac atagtcagca gaatggaatt ataaaaacgg tcatcaatcg ccggtgccgc       120
     tctcttctat cccggacatc atcgagacag gatcgttacg cgtgtgaaca gtataattat       180
     aactaatcaa actgatatgt attaaaagta gtaagtgaaa cggtaataaa tggtctttaa       240
     ccttttttaa aaagttatca ccggccacga tcgtataatt                             280
//
ID   Gypsy-678_AA-I repbase;    DNA;    INV; 6547 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-678_;
KW   Gypsy-678_AA-I; Gypsy-678_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6547
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6547
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (26-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6547 BP; 2399 A; 1375 C; 1103 G; 1670 T; 0 other;
     ggcgcagtcg tacggagcac tctacggtgc tgaagaaact cgactaatta agaaaagaac        60
     caagtgcagt gtgaaagccc aatccgtggc gttctacata catttagtga cattttcaaa       120
     ttagtgtcca atccgtgaca tcaaacgtgc cggaaagtaa gtgagtgcaa aagtgattct       180
     gttcccgatc tcgtgaagca ggacgcagct taccaaccat ccctcgacat gtaggcgact       240
     cgtgccgttt gaccagagga ccttcacacc ggtgggtttc aaccctttgg gagtgcgaac       300
     cgtaagtaat ttcgttccct ttcctttaaa ttttagctag tgttttatgc caaaatttaa       360
     tcccttaccc aaagttaaag cattaagata ccagatcgaa aaatgatcag taatctacaa       420
     gcaattttcg accaaatcca aaacatggag cagaagctca gtacgctcca attagaaaat       480
     agtaatctac tccagcaaca acaacagttg cagcaattac agcgacaggc tcccgtagcg       540
     gaaagccgtc gaacggattt ctttagaatt ccggacccca tcagaatgat accatcattt       600
     gacgggaaca aaaaacagct tagtcactgg ctggaaacag cacgacgtgc tttaaattta       660
     tgccaaccac acgttgcacc cgacctatat gccgtgtacg agcaggcggt gatcaacaaa       720
     atcgagggta aagcccgcga tatgatatgt gtgaatggaa acccgactac tttcgacgga       780
     gtagcggata ttctacacaa tgtttatggt gatcgcaata caattgcaac ttaccaaaca       840
     caattatggt cattaaaaat gaccgaatca ttacatttat attacaaacg cactaaagaa       900
     atcatggtaa acatgaaatc tttagctaga caaaaccata cttacgcgac ccattgggaa       960
     gcaataaatc aatttttgta acaagaatgc ttggcggcat ttataaatgg cctgagtaaa      1020
     ccttacttcg gctatgctca aacagcgcaa cccgctgatt tggaggatgc atacgctttt      1080
     ctatgtagat tccaaaacgc ggagaaaaca aaatcacaaa cgcaagctgc atacgatcaa      1140
     caaccacatt ccagtaaata tgttaaaccc tctaacaaac catttaataa acaatcagac      1200
     actcaaccta caatgcgata caaggcagca tctgatagaa gtaaaacgac accgatggaa      1260
     gttgacccat cgctacgctc aaatagaata taccaccatg acgcagaaca agaacaagac      1320
     aacttagacg aaagtgagga ccatgacact gatagcgaaa acgaagtgga tgaaacaggt      1380
     gtaaattttc agctgattcg cgctcagaac ggattgacgt gaatgcaata aacggacttc      1440
     cttatgtcat tttaaacatt tatggcaaca atgccaaaat actcgtagac agcggttcaa      1500
     acaaaaattt catttcgccc aatctcatcc caaaatctaa acaatttaac tgcaaaacca      1560
     ttaaaatcac aaacagttca ggacatcact atactgataa aaagtatata accaccattt      1620
     ttggcctaag tcaaaaagta accttctatc ttttaaattt tcataatttt tttgacggaa      1680
     tactcggata cgaaactctt tctgatttgg aggcattgat cgatgtaaac aatcataaac      1740
     taatctttcc gcataagaca gtaccgatga aaataagaaa attagggtca tcgatgataa      1800
     cactaaccga aaattcaaca agaattatca aactccccgt ttctcagagt agtggcaacg      1860
     tttatctccc taacgatatt aaaattagca atgctgtaat cccttctgga ttataccaag      1920
     caacgaaagg ttttgtgaac gctccaataa gaaatttcgg aaaacctgta gctttccgct      1980
     ggacgaaacc ggctaaaact atcgaagtaa cagaagtcaa caatataaat tcctaccaaa      2040
     cctttcaagc gtctcacata accacttctg aattagaaaa aatgattaga attgaccacc      2100
     tcaactctga agaaaaatct gcattactta aaaccctttc cagaaattct aaaattttcc      2160
     accatgaatc agagaagttg tcctgcacct ctgcaattca acatcgaatt aaaactgtgg      2220
     acgacattcc cgtccacaca aaaacgtaca gatacccaca tattcataaa gcagaggttg      2280
     caaagcaaat tgacgaaatg ttgcaaaacg gcatcattca aaattccatt tctccttgga      2340
     catcccctat ttggattgtt ccaaagaaat tggacgctag cggtaagcaa aaatggcgag      2400
     tcgtcattga ctatcgcaaa ctgaatgaaa agaccgtcga tgacaaattt cctatcccta      2460
     gaattgagga aattttagat cgtcttggac gcagtatgta tttcactaca ctagatctga      2520
     aatctggatt tcaccagatt gaagttcatc ccaaagaccg accgaaaacc gcctttagca      2580
     cggacaaagg gcatttcgaa tttattcgca tgccttttgg gctgaaaaac gcaccagcca      2640
     cttttcagcg cgtaatgaat catattctcg gcgacttaat tggaaaatgt tgtctagtct      2700
     acctagatga catcatcatc ttcggtaaat ccctcaaaca gcatctcgat aatttgaata      2760
     aagtccttga aagactctca caagctaatc ttaagattca gcttgataaa tgtgagttcc      2820
     tacgcaaaga gtgcgagttt ctaggtcata ttgtcaccca gaaaggcata agacctaacc      2880
     aagataaaat tgaaaagatt ataaactggc cgatcccaaa aaccacctct cagataaaag      2940
     gatttttagg gctcttaggc tattatagaa aatttattcg cgacttcgca aaattgacca      3000
     aacctttgac gaaatgcctt aaaaaagatg cgaaaatcgt ccataatgaa gagttcatta      3060
     attgtttcaa cgattgtaaa caattattga ccacagatcc gattctaaaa tacccagatt      3120
     ttgataaaaa gttcatttta gaaacagatg caagcgactt cgctttagga gccgttttgt      3180
     ctcagaaatt tgaagatggc aaagaacatc ccattgcctt tgcatctaga actttgaacg      3240
     aaacagaatg taattactcc gctacggaaa aagaattgtt agccatcgtc tgggcaacga      3300
     aacatttcag accgtatatc tatggaacta catttgaaat tcgtacggac cacaaaccac      3360
     tcgtttggct ccgacaaaaa aatgatttaa acaaacgatt acttcattgg aaattagctc      3420
     tcgaagaact agaattcgag atcaaatata aaaaaggaac ccttaatggt aacgcagatg      3480
     ctctttcacg gataaaccct gagccagtag gtgcaacaga aatcaatgca aattacgaaa      3540
     gtgacaacgc aactcaacat tcggcagaca ccgatgacaa tgattttata ccttccacat      3600
     taaggcctct gaacggattc aaaaatcaaa taattttaga agaaacacac gaggacagtc      3660
     gtgaatcctt gactctgttc agaaattatc atagaattat tatcaaaaaa ccacattttg      3720
     gaccggcatc cttaataaac attttaaagg aatatgcctc ttcaaaatat accacgggtc      3780
     tttattgtag cgaaaaaata ttaggtagct tgcaaaccgt gtacaaaaat tacttttcta      3840
     gagccaaatc ctttaaaata ttctggacac aaacatttct ggaagacgtg acagacgaac      3900
     tggaacagga cttgataatt caacgtcaac ataatgcaaa tcatagaggc ataatagaaa      3960
     catcatctca catttctcgg aagtattttt tcacaggttt aaagagtaaa gtctcaaagt      4020
     ttattaacat ctgcaggcta tgccaaaagg ctaagtacga aagacgtcca tatgaacaaa      4080
     aatatgaatt gacagcaaca ccaacaaaac cgttgcaaat agttcatatg gacatcttta      4140
     tcattcataa caaaaattac ctaacactat gcgataagtt ttctaaatta acaatggcta      4200
     tcccgcttaa aactcgcaat gcaattcaca ttctcaaagc aataacacac tttttcgcaa      4260
     atgttggaaa accttcattt ctcgtcatgg accaagaggc ctcatttacc tcaacaacaa      4320
     tcaaagaatt cctcgaagaa aaccatgtag aatatcatta tacgagtgtt ggacaatcct      4380
     cttctaatgg tacagtggaa atcgttcaca gaaccataag agaattgcac aacatcctaa      4440
     gtataaaaga tacaacgaag gatttatcgg aaactgccaa aataaatctt gcagttgcta      4500
     tctacaatga ttccatccat tcacaaacaa aattaacccc caaggaatta ttctttggtt      4560
     ttagaaacga agaacccgtc cccgaagacc taaatgaaag aattaggctc aaggaagagt      4620
     tttacaggat cttttctgaa aaacaaatag agaaaaaacg tgcagattta gaaaaactaa      4680
     acgtgaacag agaagaccca ggaaatttct ctccaaacga cgtagtcttc gagagaaaac      4740
     gcaacaatct aaaacatcaa gaaagatacc gggaaacgaa agtaattgaa aacatgaaaa      4800
     ctaatattct tgacgagaac ggaagaaaag tccacaaaac taaactaaaa agaagaagga      4860
     aaattaaccc tacttaaaac taatacctta tttttttctc gattcggttt catttcttta      4920
     cagcttggag atgacactaa aattcataat atcacattgt tgtatcattt ttgttttgtg      4980
     taaccccatc aattcctcac atatggaaat tcgcgaactc aatcaaaatc caggcattgt      5040
     cgccttcaaa actcatcccg tttttctaaa agaaggtttc caaacattaa ttcataggtt      5100
     caatttatac gcattcagag ttatattaaa gcaatatgaa tcgatcattt caaatttaga      5160
     agaaaattca aatattgtag aaattgttaa cattttgaaa caaaagcaaa gagaagctca      5220
     catcattctt gaaaatctca caacaaaaca acggagaaca aaaagatccc ttaactttct      5280
     tggatctcct ataaaaatga taactggaaa tcttgacaat gaagatttgt taaaaattga      5340
     aaatcaatta gaatcattga aacattcaaa taatgcttta gttaccgaaa ataacgaaca      5400
     gatcaggatt aatgaactat tcgaaatcag gattaataat ttgactaagc aggcatatag      5460
     acagtctagg gaaatcgata gcatcataaa acaagctagg ttgagtttag acagaccagc      5520
     agactggaaa cacattcttc aggtacacag catcatcttc aacatcgaca tggtccaaca      5580
     tcagctggcc acaatcttcg aatctattca gttgtcaaaa ctgggcgtaa tatcaaaggc      5640
     attcttacaa ccctctgaat tggaatttgc cacgcaactt ttagaatcac aaggcatagt      5700
     gatcgaaagt tttgatcaaa cttacgagtt tttggaacca atagctttcc ataataactc      5760
     agacatagta gtcctcatca aagtccccaa aattcgacaa ggtgaataca cacagcttca      5820
     aatagaaacc attcccacac gtaacaaaac catcgcaata aatgctacaa acgccattgt      5880
     tggcaacaac gagtcatact tggttacgta tccatgcacg aatatcgaga aaaacagtat      5940
     ttgcgatgtg caaaatctct tcaacgtttc caacgacaaa tgtttacatc caatattacg      6000
     aggaaatccg ggtagctgca ccttctcaaa gactctaacg aaattagaag taaaaaaggt      6060
     cggaaacctg ggagtactgg taaaaaactc tgacaaacca actctaatac agaacaattg      6120
     tggatatggc ccacgaaacc taaccggaac attccttata tcattcaagg attgctccat      6180
     aacaatcaat ggaatggatt tcagcagtaa atctttcaaa ggagaatctc cacctacagt      6240
     tcttccactt aatcgaatca acgcggatga aacagaaacc gaagcagaat caatagaaaa      6300
     cctggaagaa ttacacatac aaaatcgtca taaattagaa caccttgaag tcgttagcaa      6360
     aaggactaga gcagttaata ctggagtcat tattatgatc atgtgcctcg tcatagcttt      6420
     attcgctctt gttatgagag aagttcggaa acttaagctg aaattgacga tacgaattcc      6480
     aactgccgga gcagcagata ctccgcaatc agggttgaac cgagacggtt caatctaaga      6540
     aggggga                                                                6547
//
ID   Gypsy-678_AA-LTR repbase;    DNA;    INV; 469 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-678_;
KW   Gypsy-678_AA-I; Gypsy-678_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-469
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-469
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2094-2094 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 469 BP; 145 A; 116 C; 110 G; 96 T; 2 other;
     agttatgtac gcatcctcca acctctcgac aacttgagcc ccagtacacg cagacgtcag        60
     caaagtacgc gctagccgaa acccatcgtt agtaccaaac acgtggagac atcagcgatc       120
     cacttaccgg ccaacggtca gccacaggta cgctgatgtt gcaacccaca tccggccacc       180
     gctattgcat cagccaagag gaatccgagg agtcagcagt tcgtcgcctg ccaaggaaca       240
     aaggccagtc gacgccactt aattgatccc gctgagccag cagttgctag tccaggtgac       300
     aggtttagag acaggaggat tcagacagga aagccagtca agattgtgag ttaggagcga       360
     caagtcgcag tgtagtgtac tttgtaaaac caawtaatta agtgaatgaa taaaaggtaa       420
     agacttagtg tttttttaaa aagtsttcga tgacaatcaa cacataagt                   469
//
ID   Gypsy-67_AA-I repbase;    DNA;    INV; 4530 BP.
XX
AC   supercont1.238;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_AA_;
KW   Gypsy-67_AA-LTR; Gypsy-67_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4530
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.238; Positions  143162  147691.
XX
CC   'CTATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(210..1793,1797..4355)
FT                 /product="Gypsy-67_AA-I_1p"
FT                 /translation="MMAEGHEPKPGTSGTPGVIKMSMPMFGHMEPFVVGEK
FT                 FVEYVSRLEQFFLVNEVPDNKKVPMLVTMAGPSLYSIASRICSPEDPCTKS
FT                 YEQLIALLKKHLAPTVNVVAERYKFQKCEQSSSHTISEFIIDLKARSQSCE
FT                 YNAFLQEALRDQFVAGVYNTNLRTKLLTEANLTFERACEIARSWEAAEQES
FT                 KAMQGASKIAALNRRPGQKLFKPEKTKFIVQEKKKQASSPAKKSSEPSKTC
FT                 FRCGRSHNPESCPAKQWTCFACGKVGHVSTMCRSSKQKPSNQNRVAEMSEV
FT                 VENWKLNRLSSSSEPSEDVAAAERVNSIFVLGETESSRARIDVPAIMELEI
FT                 EGVPVKFEVNTGACDSVISKNTYQDKLSHVKLRRTVKCFQSVSGQDIRPKG
FT                 ELAVKVRNRSGDLVSLQLFVLQPERNRSITPLLGRSSLDILVPEWRNMVSF
FT                 NFSSISAIQHSLKSEIQSKFPNLFAGNSNQAIEGFSADIVLKQNAAPIFHK
FT                 PYTIPFKFRENVDQELDRMVESGILVPVRFSTASPIVITPKKDGSICICLD
FT                 GKATLNRFISTEHYQLPLIDDVLASLSNFKVFCKIDLTGAYLQVKLSDAAQ
FT                 ELCTINTHRGLFKYTRMPFGISSAPSLFQSIIDQILLGTVAVPYLDDIVVG
FT                 GRTVEECKRNLFQVLDKLNQHNVQINWSKSTFFETEIEHLGFRLTADGIRP
FT                 SSSKVEAICCAPAPKDVGQLQSFLGLLNYYHRFLPNLSTELRPLYDLLRKD
FT                 QEFVWSSACQKAFEISKKLLVANDVLEPYDPSKPLILTTDASPYGTGAVLS
FT                 HLVGQIEKPVCFASSTLTPAQVNYGQIHKEALAVMFGVSKFHKYLYGTEFT
FT                 LVTDSSALKQIFNPNKGSSAVAVSRLHRWAVTLSNYSYRVVHRPGKSFSNA
FT                 DALSRIPLPVENRIEHMSVAEHNLQNYVGIGEIRTQQHCDPILGKVIRFVK
FT                 NGWPRVVETDLKPFAQINTNFEMEDNCLYFEDRVVIANSLQRRVLEKLHEN
FT                 HDGVVRMKMIGRSYFWWKGFDKDVANFVKSCVTCQKTQKVPREVVESSWPP
FT                 ANHAFERLHLDLFHFEGQTFLIVVDAYSKFIDVKLLRRTDANSVLEKLDEI
FT                 YTYFGLPTEVCSVNGSPFNSSLFVEACKANNINVLKSPPYHPQSNGLAERG
FT                 VQTIKTVLKKYLLDEKFKPMPIQRKLNRILFNYRNTPSTTTSRTPSSMMFS
FT                 YVPRTLLNSSNPVKLDIQNEQKNVVKPSLRPEKSRSLVCSKTYSRGDKVMY
FT                 RNHMDDYVRWIPAIVLEKISPHTYLINLNGNVRMVHANQIRMSDLSDKFHP
FT                 SIPVICPIPESEQPTTKVEVPGSSTAIQQRPLNKKKSPKKKKSEKRKRSDS
FT                 TSPKLRRSKPIRDKTCKR"
XX
SQ   Sequence 4530 BP; 1282 A; 939 C; 1073 G; 1236 T; 0 other;
     aatttttggc gacgagtgaa acggaaaacg cgtctgtaat ccggaaagtg tcgtaaagtc        60
     ggtcggtcga gtgcacacgt gagtggagga agtctaacct cacttttcag aacaacgtcg       120
     gttcggaaca cgtggtgact gtagtcagtg cgatcatgcg tctgagatca gtgataagtg       180
     tagtgtcggt gcggtgaaaa acgaacaaaa tgatggcaga aggacatgaa ccaaaaccgg       240
     gtacgtcggg aactccggga gtgataaaaa tgtcgatgcc aatgttcgga cacatggaac       300
     cattcgtggt tggcgaaaag ttcgtcgagt acgtcagtcg gttagaacag tttttcttgg       360
     tgaatgaagt gcccgataat aagaaagtgc cgatgttagt gacaatggcg ggtccgagcc       420
     tgtattcgat tgcgtcgaga atttgttctc cggaagaccc gtgtacgaaa tcttacgagc       480
     aattgatcgc gttattgaaa aagcacctag ccccaaccgt caatgtggtg gctgagcgtt       540
     ataaattcca aaagtgtgag cagtcttcaa gtcataccat ttcggagttc atcatcgacc       600
     tcaaggcccg atcccagtcg tgtgaataca atgctttcct tcaagaagcc ttgcgtgatc       660
     agttcgtggc cggagtgtat aatacgaatc ttcggacgaa gttgctgacg gaagctaacc       720
     tcactttcga aagagcatgc gaaatcgctc gcagctggga agcagcggaa caggagtcga       780
     aagcaatgca gggagcatcc aaaattgctg ccctcaaccg gcggccggga cagaagttgt       840
     tcaagcctga aaagacgaag ttcatcgtcc aggagaagaa gaagcaagcc agtagcccag       900
     cgaagaaatc atcggagccc tcgaagacat gtttccgttg tggtaggtcc cacaacccag       960
     agtcgtgtcc agccaagcag tggacgtgct tcgcatgtgg caaggtcggc cacgtgtcca      1020
     caatgtgtcg gtcgtcgaag caaaagccga gcaaccagaa tcgagtagca gaaatgtcgg      1080
     aagtcgtcga aaactggaag ttgaaccggt tgtcctcatc gagcgagcct tcggaagatg      1140
     tagctgcggc ggaacgtgtc aacagcattt tcgttcttgg ggagactgag tcaagtcgag      1200
     cgcgaataga tgtgcctgcg attatggagc tagaaattga gggagtgcca gtgaaatttg      1260
     aagttaatac aggagcgtgt gattcagtga tatcgaaaaa tacgtatcaa gataagcttt      1320
     cccacgtcaa attgcgacgg actgtcaagt gctttcagtc agtgtcgggc caagacatcc      1380
     gtccaaaggg agaactagcg gtcaaggtaa gaaatcggag tggtgattta gtgtcgcttc      1440
     aactttttgt tcttcaaccg gagaggaata ggagcatcac ccctctactt ggtcgttcga      1500
     gtctcgatat cctggttcct gaatggagaa acatggtgag tttcaatttt tcttctatca      1560
     gtgctattca acacagtctt aagtctgaaa ttcagagcaa atttccaaat ttgtttgctg      1620
     gcaactccaa ccaggcaatt gaaggtttca gtgccgatat tgttttgaag caaaatgcag      1680
     ccccaatttt ccataaaccg tacactattc cgttcaaatt tcgcgaaaat gtagatcaag      1740
     agttggatcg catggtggag agcggaattc ttgttccagt ccgtttctcc acgtaggcga      1800
     gtcccattgt gatcactccg aaaaaggatg gctcaatttg tatctgtcta gatggaaaag      1860
     caaccttgaa tcggttcata tccactgagc attatcagtt acctttgatt gatgatgtcc      1920
     tcgctagtct atcaaatttc aaagtctttt gcaaaatcga tttaactggt gcatatttgc      1980
     aagttaaatt gtccgacgca gcgcaggagt tgtgtacgat aaacacccat agaggattgt      2040
     ttaagtacac ccggatgcct ttcggtatca gttcagcacc atcgttgttt cagtccatta      2100
     tcgatcaaat tttactagga acagtagccg ttccgtattt agatgatatt gtagttggtg      2160
     gcagaaccgt tgaagagtgt aaaaggaacc tcttccaggt tttagataag ttaaatcagc      2220
     acaatgtgca aattaattgg tccaagtcaa catttttcga aaccgaaatt gaacaccttg      2280
     gcttcaggct aactgctgat ggaattcgac ctagttcttc aaaggtcgaa gccatttgtt      2340
     gtgcacctgc accaaaagat gtaggtcagt tacagtcgtt tttaggtctt ttgaactatt      2400
     atcatcgatt tttgcctaat ttgtccaccg agttacgtcc gttgtacgat ctgttaagaa      2460
     aagatcaaga attcgtgtgg tcgtccgcgt gtcagaaagc gttcgaaatc agtaaaaagc      2520
     ttttggttgc taacgatgtg ttggaaccat atgatccgtc gaaaccgttg attctcacta      2580
     ccgatgcgag tccgtatggt accggtgcgg ttttgtctca ccttgtcggt caaatcgaaa      2640
     aaccagtgtg ttttgcttcg tctacattaa cccccgcgca ggttaattac ggtcaaatac      2700
     acaaagaagc cttagcagtt atgttcggtg tgtcaaaatt ccataagtat ctgtatggta      2760
     cggaatttac tctcgtgacc gatagctccg cgttaaaaca aattttcaat ccgaataaag      2820
     gttcgtcggc ggttgcggtg tctcgattac accgttgggc agtaacacta tcgaattatt      2880
     cgtatcgcgt tgtacatcgt cccggaaaaa gttttagcaa tgccgatgcg ttgtctcgta      2940
     tacccttacc cgtcgaaaat cggattgagc acatgtcggt agctgaacat aacctacaaa      3000
     actacgtcgg tatcggtgag attagaacac agcagcattg tgatcctatt ctcggtaagg      3060
     ttattcgttt tgttaaaaat ggatggcctc gggttgttga aaccgatttg aaaccgttcg      3120
     cgcagattaa cacaaatttc gaaatggagg acaattgcct ttacttcgaa gaccgcgtag      3180
     tgatagcaaa ttccctccag cggcgcgtgc tcgagaagct tcatgagaat catgatggcg      3240
     tcgtgcgaat gaaaatgatc ggtcggtctt acttctggtg gaaaggattc gataaagatg      3300
     tcgcgaattt cgtaaaatcg tgtgtcacat gtcagaaaac tcaaaaagtg cccagagaag      3360
     tagtcgagtc tagttggcct ccagcaaatc atgcttttga acgccttcat ttggatttgt      3420
     ttcattttga aggtcaaacg tttttaattg tcgtcgatgc atattcgaaa tttattgatg      3480
     ttaaacttct gcgaagaacg gatgccaata gtgtattgga gaaattggat gaaatataca      3540
     catacttcgg tcttccaact gaagtgtgtt cagttaatgg ttcaccattt aattcgtctt      3600
     tgtttgttga agcttgcaaa gcaaacaata tcaatgtgtt gaaatctcct ccataccatc      3660
     cacagtccaa tggattagcg gagagaggag tacagacaat caagactgta ttgaagaagt      3720
     atctgttgga cgagaaattc aaaccgatgc caattcagcg aaaacttaac cgcattctgt      3780
     tcaactacag aaatactccg tctaccacta ccagtagaac gccctcgtct atgatgttct      3840
     cttacgtgcc tcgcacactt ttgaattcaa gtaatccggt caagttggac attcaaaatg      3900
     aacagaagaa tgtggttaaa ccttcgttgc gtcccgaaaa gtccaggagc cttgtatgtt      3960
     ccaaaacgta ttctcgaggt gataaggtta tgtatcgcaa tcacatggat gattatgtcc      4020
     gttggattcc agcgattgtt ttagagaaaa ttagtcctca cacttacttg ataaacctca      4080
     acgggaatgt acgtatggtt catgccaatc agatccgtat gtctgatctg tcggacaaat      4140
     tccacccttc catacccgta atatgtccta tccctgagtc cgagcaacca acgacaaagg      4200
     tagaggtgcc tggttcctcg accgcgattc aacaaagacc gttgaataag aagaaatctc      4260
     cgaaaaagaa gaaatcggaa aaaagaaaac gcagcgattc tacatcacca aaactccgtc      4320
     gttccaaacc tattcgcgat aaaacttgta agcgctagtg tgggtttagg aaaacggatg      4380
     ttttgtccct tcgtgtatcg aaagtatttg acagttagga attacaattt tttcaagtat      4440
     gatagctgtt tcgcgttttc gatatcgttg gattacagtt tttttgtaca gaagaattag      4500
     ctctacagtc tcatttaaag ctgggagaag                                       4530
//
ID   Gypsy-67_AA-LTR repbase;    DNA;    INV; 293 BP.
XX
AC   supercont1.238;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_AA_;
KW   Gypsy-67_AA-I; Gypsy-67_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-293
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.238; Positions  142869  143161.
XX
SQ   Sequence 293 BP; 86 A; 62 C; 53 G; 92 T; 0 other;
     tgttgtgaac cctattagca ttgcagaatc catcaactgt atactgtggt aaattagcaa        60
     tagtagtagt gtatagaaat agtcatgacc ttgaacgtag attattctct cacactttcc       120
     ccacgctcaa tagattgtaa aacaatgcct tttgttctgc accctataaa agaccatgcg       180
     tccccatgat cggtctcttt tgccgatcga ccgtggagta agtatcacga tagccgtaat       240
     aataaattag tgattagtga aagtcctgtg tttcatttct gcacgacatt aca              293
//
ID   Gypsy-67_AnFu-I repbase;    DNA;    INV; 4385 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4385
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2951-2951 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..4383
FT                 /product="Gypsy-67_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MHSNEEITQQTRNGGEGPPSRSSHRGSVGRPESEFGW
FT                 IHELFKQQQITMQEQQQTFMKQQEKFISEIWQTARCKDPVNVEQISDVLAG
FT                 QIKDFRFNPEESVTFTGWFSRYEDLFEKDAHKLEDDGKVRLLLRKLGLPEH
FT                 ERYTSYVLPSKPKDFNFAETVSKLKSLFGPRESEVSKRFKCLQLQKTKLEE
FT                 YVAFSCRVNKSVVESELAVLTEEQLKCFLFVCGLKDDSDAEVRLRLLKQIR
FT                 GNGSITLPQLVEECQQIVDLKGDTVMIEGENKEVNVVKDGKRERIAQKWQN
FT                 NRVEQGAQRKASIPVIKCWLCGEGHYARKCAYGGYRCKQCYKYGHKEGHCT
FT                 AAERYRKSKSYGKARTVVVNRVMSKGKGHVSVMLNGESVKMMVDTGADISI
FT                 ISRDQWRKIGEPPLRPPSVKAKTASGNKLRIIGEFCAQLTLKQQTENCVVR
FT                 VTEEQLMLLGADMMDVFGLWDVPLASVCNSVCVATQSMESIRKEFEGLFSH
FT                 DLGHCKKAKVRMELKEDAVPVFRPKRPVSSAMRPAIAEELDRLEKVRKANG
FT                 SIRICGDYSTGLNNALQHHQYPIPLPEEIFSTLANSSMFSQIDLTDAFLQV
FT                 EVEQECRELLTVNTHRGLYAYNRLPPGVKVAPGAFQQLMETMLAGLKDVAV
FT                 YLDDIVIGGADEHTHLMNLRAVLAKLREYGFKIRPEKCNFMQKQIKYLGHI
FT                 LDCEGQRPDPSKIEAIVNMPTPKNPSEVRSFLGAINYYEKFVPQMRNLRYP
FT                 LDDLLKKDGHWQWSPECQQAFETFKRILSSDLLLTYYDPRKPIIVAADASS
FT                 VGIGATISHKMSNGTIKIIQHASRALTKTEMGYSQPDREGLALIYAVTKFH
FT                 RMIFGRRFTLQTDHAPLLRIFGSRMGIPVYTANRLQRWALTLLMYDFKIEY
FT                 VSTEKFGNADVLSRLIANHQKPDPEYVIASVETERDVRAVIGSITQIMPLT
FT                 FGEVLRETNKDPLLREVRDFVLYGWPKKKVEKLELRNFQVRSESLSTVNGC
FT                 LLFGERLVIPGPQRKKCLQQLHEGHPGMDKMKALARSYVYWPGIDRDVEEK
FT                 VRRCQQCAAVAKTPVHSNPISWPESTAPWQRVHVDYAGPIDGTYYLLVIDS
FT                 FSKWPEIVATTTITSNATIKILRGLFSRFGMPNVLVSDNGLQFTSADFEMF
FT                 CTTNGIEHLRTAPYHPQSNGQAERFVDTFKRALRKMEREGRTEQEALDIFL
FT                 MTYRSTPHKQLDRKQSPAELMFGRRMRTCMELLRPPIKLGRCAKDSKCLRE
FT                 YQQNDKVYAKQYFRNKWKWVPGTVKKRLGTVMYEIITEGNRSLRVHINQLR
FT                 TRVPDDSPRKPNETNRSFHMLDVLLDAWDINIDGVTPSREETVERNTQVAG
FT                 SPELVSLSTSSVPSSPSSSSDYLSSPSSTEQRSATSPGFATADSGSSTPVQ
FT                 PLRRSTRIRRPPQWIEPYRHTVLKGG"
XX
SQ   Sequence 4385 BP; 1316 A; 870 C; 1174 G; 1025 T; 0 other;
     gtggcgacga ggattttaat cttgttttaa cgtacagacc atacgtgcat acgacaaata        60
     ataatgcata gtaacgaaga aattactcag cagacaagga acggtggtga aggaccgcca       120
     tcgcgcagca gccatcgagg aagcgtcggt cgaccagaat ctgaatttgg ttggattcat       180
     gaacttttca aacaacagca aattacgatg caggagcaac aacaaacttt tatgaaacag       240
     caggaaaagt tcatatcaga aatttggcaa acagcacgct gcaaggatcc cgtgaatgtg       300
     gaacagatta gtgatgtgct ggcgggccag atcaaagact ttcgtttcaa tcctgaagag       360
     agtgtcactt tcacaggatg gttttcacga tatgaagacc tttttgagaa ggatgcgcat       420
     aaactggaag acgatgggaa ggtgcgattg ctgctgagga agcttggttt acccgagcac       480
     gaacgataca cgagctatgt gctgcccagt aagcctaagg atttcaattt tgccgagacg       540
     gtgagtaagt tgaaatcgct ttttggtccc cgtgagtcgg aggtgagcaa acggtttaag       600
     tgtcttcaac tgcaaaagac aaagctggag gaatatgtgg catttagctg ccgagtaaat       660
     aaaagtgtgg tggaatccga actcgcggtg ttaacggaag aacaactgaa gtgttttcta       720
     ttcgtgtgcg ggttaaagga cgatagcgac gccgaagtaa gattgcgatt gcttaagcag       780
     attagaggaa acggatcaat cacattgccc cagttagtcg aggaatgtca acagattgtt       840
     gatttaaagg gagacaccgt aatgatcgag ggcgagaaca aggaggtaaa cgtcgtgaaa       900
     gacgggaaac gagagcgaat tgctcaaaag tggcaaaata accgcgtgga acaaggagca       960
     cagcgtaaag ccagtatacc cgtgataaag tgttggcttt gcggggaagg acattatgct      1020
     cggaagtgtg cttatggcgg ttacaggtgc aagcaatgtt acaagtatgg ccacaaggaa      1080
     ggtcattgta ctgcagccga acgctatagg aaatcaaaat cgtatggtaa agcgcgaacg      1140
     gttgtagtta atagggtcat gagcaaaggc aaaggtcatg tgagcgtgat gctaaatggc      1200
     gaatccgtaa agatgatggt ggacactggt gcagatattt caataatttc gagagaccaa      1260
     tggcgaaaaa tcggcgaacc gccattgcgt ccaccatccg tgaaagcaaa gacggcgtcg      1320
     ggtaacaaac tgcgtatcat aggtgaattt tgtgcacagt taactttgaa gcaacaaacg      1380
     gaaaattgtg tagtgcgagt cactgaggaa caattaatgt tgctaggtgc agatatgatg      1440
     gatgttttcg ggttgtggga tgtaccgctg gcgtcggtgt gtaatagtgt gtgtgtagca      1500
     acccagagca tggagtctat tagaaaggag ttcgaaggcc tattttccca tgatttggga      1560
     cattgcaaga aggcgaaagt gaggatggag ctgaaagaag atgctgttcc cgtatttcgg      1620
     ccaaaacgac cagtttcttc tgcgatgcgc ccggcaatag cagaggaatt agatcggctg      1680
     gaaaaagtgc gcaaggctaa tgggagtata cgcatatgtg gagactactc cacagggtta      1740
     aataatgccc tccagcacca ccagtacccg attccgttgc cggaagagat tttctcaacg      1800
     ttggcgaatt catcgatgtt cagtcagata gacctcaccg atgcctttct tcaggtcgaa      1860
     gtggaacaag agtgcagaga actgctaaca gtaaacacac atcgaggatt gtatgcctac      1920
     aatcgactgc cgccgggggt gaaggttgca ccaggtgcct ttcagcagtt aatggagacc      1980
     atgctggctg gactaaagga cgttgcagtg tatctggacg atatagtcat cggcggagct      2040
     gatgaacaca cccacttgat gaacctgcgt gcagtgctag cgaagctgcg ggagtatgga      2100
     ttcaaaatca gaccagagaa gtgtaatttt atgcaaaaac agattaaata tcttggtcac      2160
     attttagatt gcgaaggtca acgcccggat ccctctaaga tagaagcgat cgtgaatatg      2220
     cccacaccga agaatccatc cgaggtacgt tcattcttag gggcgataaa ctattacgag      2280
     aagtttgtgc cccagatgag gaatctgcgt tatccgctgg atgacttgct taagaaagat      2340
     ggacattggc aatggagtcc ggaatgtcaa caagccttcg aaacgtttaa gcggatactg      2400
     agttcagatc ttctgttgac atactacgat ccgaggaagc cgataattgt agcggccgat      2460
     gcatcatcag tgggtatagg agccacgatt agccacaaaa tgtcgaacgg aactataaaa      2520
     ataattcagc atgcatcccg cgccctaaca aaaacggaaa tgggttacag ccaaccagat      2580
     cgcgaaggat tggcgttaat atatgcggtt actaagttcc accgaatgat tttcggacga      2640
     cgatttacat tgcaaaccga tcatgcaccc ttgctgcgaa tttttggctc gcgaatggga      2700
     ataccagttt atacggcgaa tagattgcaa cgttgggctt taacactgct gatgtacgat      2760
     tttaaaattg aatatgtgtc aacggagaag ttcggaaatg ccgacgtact gtctcgcttg      2820
     atagcgaacc atcagaaacc ggatccggaa tacgtgattg cgagtgtcga aacagaaagg      2880
     gatgtgcggg ccgtgatagg cagtataacg caaataatgc cactgacgtt tggagaagtc      2940
     ttgcgtgaaa ctaacaaaga ccctttacta agagaggtac gagattttgt gctatacggt      3000
     tggccaaaga agaaggtaga aaagttagag ctgcgaaact tccaagtcag aagcgagtcc      3060
     ttgtccacag taaacggatg tttacttttt ggcgagaggt tagtgattcc tggacctcag      3120
     aggaagaaat gcttgcagca gttacatgaa ggtcatcctg gcatggataa aatgaaggcg      3180
     cttgctagaa gttatgtata ttggcccgga atagaccgtg atgtcgagga aaaggtccga      3240
     agatgccaac aatgtgcagc agttgctaag acaccagttc atagtaatcc aatctcatgg      3300
     ccagaatcaa ctgctccgtg gcagcgagta catgtggact acgctggccc tatcgacgga      3360
     acgtattatt tgcttgtaat tgattcgttc tctaaatggc cggagatagt ggcgactaca      3420
     acgattacat caaacgcaac cattaagata ctacggggtc tgttcagtcg ttttggaatg      3480
     ccgaatgtat tagtgagcga caatgggttg cagtttacca gtgcggattt tgaaatgttt      3540
     tgtacaacca acgggattga gcatctgcgc acggccccct accatccgca gtcaaacgga      3600
     caggcggaaa gattcgtaga tacgtttaag cgagcgttaa ggaaaatgga gcgggaaggt      3660
     aggacagaac aagaagcttt agatatcttc ctaatgacat atcgtagtac gccacacaag      3720
     cagttggata ggaaacaatc tcctgcggag ttgatgtttg gtcgtagaat gcgtacgtgt      3780
     atggaacttt tgcgaccacc gatcaagtta ggcagatgtg cgaaagacag taaatgctta      3840
     agggaatacc aacaaaatga taaagtgtac gcgaagcagt attttcgtaa taagtggaag      3900
     tgggttcccg gcacagtaaa gaaacgatta ggtacggtga tgtatgagat cataacggaa      3960
     ggtaaccgat cgttgcgcgt tcatatcaac cagttgcgaa cgcgagttcc tgatgatagt      4020
     ccgagaaagc cgaatgaaac gaatcgttcg tttcacatgt tggacgtgtt gctggacgct      4080
     tgggacataa atatagatgg agtaacacca agcagagaag agaccgtcga acgcaacaca      4140
     caggtagctg gatcacctga actggtatcg ctgtcgacgt cctcagttcc atcatctcca      4200
     tcgtcgtcat cagattattt atcatcgccg tcctcaacag aacaacgatc ggcaacatct      4260
     ccagggtttg ccacagccga cagcggatcg tcgacgccgg tacagcctct acgtcgttct      4320
     acgaggattc gtagaccgcc tcagtggatt gagccatacc gccatacggt attaaaaggg      4380
     ggaga                                                                  4385
//
ID   Gypsy-67_AnFu-LTR repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-232
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2879-2879 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 232 BP; 54 A; 48 C; 58 G; 72 T; 0 other;
     tgttgtatac ggcaatcagg gttgcctgcc cctggacccg aagcagtgag tgccgctctt        60
     aggagacagt gatcggtctc ctagtgatgc gtgctagatg gtcagggtgt gggtcttgtc       120
     tcgtcctagc cagcaaccta gccggtcgtt attgtatcgt cattaccttg tacttttgtg       180
     tgtattttaa tttaataaac taagattttt taaaagagca aaagatccaa ca               232
//
ID   Gypsy-67_CQ-I repbase;    DNA;    INV; 6862 BP.
XX
AC   AAWU01019862;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_CQ_;
KW   Gypsy-67_CQ-LTR; Gypsy-67_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6862
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 513-513 (2011).
XX
DR   GenBank; AAWU01019862; Positions   84358   77497.
XX
CC   Positions [3530-4033] - Reverse transcriptase
CC   Positions [5087-5563] - Integrase core
CC   'AAGT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           330..2711
FT                 /product="Gypsy-67_CQ-I_2p"
FT                 /translation="MASNNNQVGLGTYLNPSELLPDEVEYELNLRRINISH
FT                 LQLEDRRLVLRRAQLAEMNQPVVLTSRRTIIQDTNFIQSKLVDLRYELERC
FT                 GARSELLTRLRHIRLRVLRTEAPTRDQVMVKNELLEEIDFYFGVYASPLGG
FT                 PRRNASGGPQLSNTSGQSNPDGAGTQSNVHGAQGGAGPNTQPGRSRTGTVP
FT                 RRTTNPTPNPETAPPRRLIFDLASNSWIDNTGANSSHGGNFDSPLARGGQN
FT                 RQSTQNHGPSEHSSPYVDETARVPPRNSRLNPNVRSELSQIVDDVLTTRME
FT                 GMMDQLMQSMLTFIDQNQHRNRDETEEPEIGNLNLGNNQAGGRPYRDRSEP
FT                 PPGGNGINANPRGRPIDGRGSGNPDFRPRDTPFDQGLPDNYPDGDGAQGYD
FT                 TRNRNPENNDGIRGDPSLGNDGNRGSSSQNPPFGRGNLDRYSGNRDLSRGN
FT                 SSGNPDRWPDRNHGQRCTEGEFERYRESGGRPEQPSPNRSMDQGSVPDYDP
FT                 GRRGFEGRYDNHRIPINKWPIKFSGDQKVMSVEEFVKRVEILAGNNQVSDE
FT                 ELLRKANFLFKSESVAETWYYTFSHKFASWQMLKHQLRLRFETPNKEKVLA
FT                 RQIRNREQYPNETFQIYRSEIERLNQQMSRPLGDGELCSILFDNMKDWYRP
FT                 HFAFMRPENLTVDLLSDLCHELDKSVYRTYAPRPRPYHVNCLEEDGAYAYP
FT                 PDEEPYGEEVNAMSRSRPRRFARPEQGEPNQNAPETENNVLCWNCRQFGHF
FT                 WRGCQRNIKLFCHVCGRPDVTTANCPENHPRMENQKNPFLEGN"
FT   CDS           2552..5938
FT                 /product="Gypsy-67_CQ-I_1p"
FT                 /translation="MLELSSVRAFLERMPEEHQAVLPCVRKTRRHDRELSG
FT                 KSPQNGEPKKPILGRELGRTSSNANNTPDSSFDRFSELLTINVRENRCPYV
FT                 TVSIFGTSVEGLLDSGAEACILSDAELLNKHNFTRSPTKLKIRTADGTAHN
FT                 CLSSVYIPYTFRGVTQVIPTLFVPNLAKKLILGNEFWKLFKITPAVEEHGQ
FT                 LTQLNVNEVGVDEISINFIETYFAEESAEINLVLEPDTGFIRPVPVEEDLS
FT                 LELPAVEPPYQKPIVSVETEHPLSPTENKQLLAVVRKLMGNGKLGRTHVLE
FT                 HKIEILEGERPKKPPRYRVSPAIQKEMDKEIERMKELDVIEESDSDWCNPL
FT                 LPVRKSSGEWRLCLDCRRVNEVTKKEAYPFPDMQVILGRIEKARFFSIIDL
FT                 SKAYWQIPLAMESRDYTSFRAGKSLYRFKVMPFGLTGAPTTQTKLMNKVLG
FT                 YDLEPNVFVYLDDIVVTSHTFEEHLQLLQKIADRLAAANLSISIEKSRFCQ
FT                 KKISYLGYVLTEEGLSIDSQKLEPILSYPAPTTIKEIRRLLGMVGFYKQFI
FT                 PNYSTVLAPITDLLKGKSKIGWTERAEKALNEIKSLLTSPPVLANPDFSQP
FT                 FVIESDASLVAAGAVLVQYQAGIRRPIAFFSKKFSATQVKYSATERECLAV
FT                 ILAIEKFRHYVEGTRFKVVTDAQSLKWLNQVSIEGNSARLVRWALKLQQHD
FT                 IILEYRKGKLNVVADALSRAVPEPDVFTIDLDLERLKKNIAKDEERYKDFR
FT                 VIRGKVYKFVASSTPNDQRFEWKMVPTKAERILILDAEHSVAHFGFYKTLK
FT                 KIQEKYYWPGMTVDVKRFCRGCEVCRTSKYPNTARVPPIGRSKVASMPWQM
FT                 ISVDYMGPFPRSKHGNTVLLVITDHFSKFVIIQPMREAKTTALVAFLESMV
FT                 FLQFGVPEIVISDNGPQFKSALFGNLLKRYKVNHWKNASYHPANNPTERVN
FT                 RVIVAAIRTYLKDDQREWDENINQVALAIRTAVHESTEFTPYFINHGRNYI
FT                 SSGEEYSRIRETNGGTEQEAEKLGEDMKIIFEKVKLNLKKAYDRYGKYYNL
FT                 RSKAKAPTFEKGEVVLKKNYGLSNKAKRFNAKLANTYSPAKVIAKLGSHCY
FT                 ELEDLTGQKLGVFRSADLQKR"
XX
SQ   Sequence 6862 BP; 2059 A; 1569 C; 1710 G; 1524 T; 0 other;
     ttttggcgcc caacgtgggg cgataattga ttagggcgct ttagagagtt gtagttgtag        60
     acaaaaaaaa aaaaacgatt attctcggaa cgacacagta tttgcaaatc gagtaaatta       120
     ggattattcc gggcgcgatc agtggaaaat aaaggtagaa tttagggaaa tctattcgcg       180
     aatctattgg tatttgggaa attgtataac ggggtgaaaa attggggttt gcttacttta       240
     aatttgaatt agcataactt ataattattt aaaaattatt gaaaaaaaaa acaaggaatt       300
     atcaaaaaaa aaaaaaatca tttctcaaca tggcttcaaa taacaatcaa gtcggtctgg       360
     gaacgtattt gaacccgagc gagctcttac ccgacgaagt agagtatgag ttgaacctcc       420
     gacgaataaa catttcgcat cttcagttgg aggatcggag gctggtgttg cgacgtgccc       480
     agttggcaga aatgaaccaa cccgttgtcc tgacctctcg tcgaacgatt atccaagaca       540
     cgaactttat acaatccaag ctcgtcgact tgcgatatga attggaacga tgcggtgcca       600
     ggtcagagtt attaacacgg ttgagacaca tccggttacg tgttctgcgt accgaggcgc       660
     cgacgagaga ccaggtcatg gtaaagaatg aattgttgga ggaaattgac ttttactttg       720
     gagtttacgc cagtcctcta ggtggaccgc ggaggaacgc ttctggggga cctcagctgt       780
     caaacacaag tggacagagt aatcccgatg gcgccggaac gcagtcaaat gtgcacggag       840
     cacagggtgg agcaggtccg aatacgcaac ccgggagaag tcgcacggga accgtaccga       900
     gacgaacgac caatccgacc ccaaacccgg aaacagcgcc tcccagaagg cttatcttcg       960
     atttggcatc aaactcgtgg attgacaata ctggagcgaa ttcttcgcac ggtggtaact      1020
     tcgactctcc cctagcgaga ggcggccaga atcgtcagag cacgcaaaat cacggaccat      1080
     cggagcattc gtcaccgtac gtcgatgaaa cagcacgggt gccgccaagg aattccagac      1140
     tgaacccgaa cgtgagatct gaacttagtc agattgtgga cgacgtttta acaacacgaa      1200
     tggaaggaat gatggatcaa ttaatgcaaa gtatgctcac atttattgac caaaatcagc      1260
     atcgaaatcg agacgagacc gaggaaccgg aaattggaaa cctgaacctc ggcaacaacc      1320
     aggctggcgg aagaccatac cgggatcggt cagagcctcc tccaggcggc aatggaatca      1380
     acgccaaccc cagaggaagg ccgatcgatg gacgtgggtc cggcaacccg gacttccggc      1440
     cgcgagatac cccgttcgat caaggattac cggacaatta tccggacggg gatggcgccc      1500
     aaggttacga cacgcgaaat cgaaacccgg agaataacga cggaattagg ggagatcctt      1560
     cgttgggaaa tgatggaaat cgtggttcct caagccagaa tccgccattt ggccgtggaa      1620
     atttggaccg gtattcagga aaccgcgatt tgtcgcgagg caactcttcg ggaaacccag      1680
     atcggtggcc ggatcgaaat cacggacaac ggtgtacgga aggagaattc gaacgatacc      1740
     gcgagtcagg tggaaggccc gaacaaccaa gtcctaatcg gtccatggac caggggtcgg      1800
     ttccagatta tgacccaggg agacgtgggt tcgaaggacg atatgacaat caccggatcc      1860
     cgatcaacaa gtggccaatc aaattcagcg gcgatcagaa ggtcatgtca gtcgaagagt      1920
     ttgtaaaacg cgtcgagata ctcgctggga ataaccaagt cagcgacgag gaactgttga      1980
     gaaaggctaa tttcctcttt aaatcggaat ccgtcgcgga aacctggtac tacacgttta      2040
     gtcacaaatt tgcatcgtgg caaatgttga agcaccaact ccgccttcga tttgaaactc      2100
     cgaacaagga aaaagtacta gcgagacaga tccgaaatcg agagcaatac cctaatgaaa      2160
     cgttccagat ctaccgaagt gaaatcgagc gattaaatca gcagatgagt agacctctgg      2220
     gtgacggcga gttgtgcagt atcttatttg ataacatgaa ggactggtac cgtcctcatt      2280
     ttgcgttcat gagacccgag aacctgactg tagacctgct gagcgatcta tgccatgagc      2340
     tggacaagtc ggtttatcgc acgtacgcac cccgcccgcg accgtatcat gtcaattgcc      2400
     tggaagagga cggagcttat gcgtacccac cggacgaaga accgtatgga gaggaagtca      2460
     atgcgatgtc cagatcccga cctcgacgat tcgctagacc agaacaagga gaaccgaacc      2520
     aaaacgcgcc ggagaccgag aacaacgtac tatgctggaa ctgtcgtcag ttcgggcatt      2580
     tctggagagg atgccagagg aacatcaagc tgttttgcca tgtgtgcgga agaccagacg      2640
     tcacgaccgc gaactgtccg gaaaatcacc ccagaatgga gaaccaaaaa aacccattct      2700
     tggaagggaa ttagggagga cctcttccaa cgcaaataac actcccgaca gctcattcga      2760
     tcgtttttct gaactgttga ccatcaacgt tcgggaaaat cggtgccctt atgtgaccgt      2820
     ttcgatcttc gggacttctg tcgaaggact gttagactca ggagcggagg catgtattct      2880
     aagtgacgcc gagctgctca ataaacacaa cttcactagg tctcccacga aactgaagat      2940
     ccgaaccgct gacggaaccg cacacaactg cttgagttcc gtttatatcc catacacgtt      3000
     ccgaggggtt acccaggtga tccctaccct gttcgtacct aatctggcca agaaattgat      3060
     tcttgggaac gagttctgga agttgttcaa gatcacaccc gcggtagaag aacatgggca      3120
     actcactcag ttgaacgtta acgaagtagg cgtggacgag atctcgatca attttatcga      3180
     gacgtacttc gccgaagaat cggcagagat caacctcgtt ctcgaaccgg atacgggatt      3240
     catccgaccg gtacccgttg aggaagatct tagtctcgag cttccggctg tagaacctcc      3300
     atatcagaag ccgatcgtga gtgtggagac ggagcatccg ctgtccccaa ctgagaacaa      3360
     acaacttcta gctgtagtgc gtaagctgat gggaaacgga aaattaggac gaactcatgt      3420
     tttggaacat aaaatcgaaa ttttagaagg agagcggccg aagaaaccgc cacggtatcg      3480
     agtttcaccg gccattcaga aagaaatgga caaagagatc gagaggatga aggagctcga      3540
     cgtgattgaa gagtcggatt cagattggtg taatccgttg ctcccggtcc gaaagtcgtc      3600
     cggagaatgg cggttgtgcc tcgattgtcg tcgagtcaac gaagtgacca aaaaggaggc      3660
     gtatccgttc ccggacatgc aggtaattct cgggagaatt gagaaagccc gattcttctc      3720
     gatcattgat ctgtccaagg cgtattggca aataccgcta gcgatggaaa gtcgagatta      3780
     cacgtcgttc cgagctggga agtcccttta ccgcttcaag gtgatgccgt ttgggttgac      3840
     gggagcgcct acaacacaaa ccaagctgat gaacaaagtg ctgggatacg acctggaacc      3900
     gaacgtcttc gtgtatctgg acgatatcgt cgtcacctcc cacactttcg aggaacatct      3960
     tcagttgttg cagaagattg ctgatcgcct ggccgctgcc aacctttcaa tcagtatcga      4020
     aaaatctcgc ttttgtcaaa agaaaatctc ttacttgggc tacgtcctga cggaagaagg      4080
     gttgtcgatc gatagccaaa agctcgaacc cattttgagc taccccgcac cgactacaat      4140
     taaggagatt cgtagactgt taggcatggt cgggttctac aaacaattca tcccgaacta      4200
     cagtacggtg ctcgcaccga ttacggacct cctgaaggga aagtctaaga ttggatggac      4260
     cgaacgagcg gaaaaggctc tgaatgagat caaaagttta ctcacatccc caccggtgct      4320
     cgccaatccg gacttctccc agcctttcgt catcgagtca gacgcgtcct tagtcgccgc      4380
     tggagctgtt ttggtgcagt atcaggccgg aatccgtcgt ccaatcgcgt tcttttcgaa      4440
     gaaattctca gcaacccaag tgaagtattc tgcaactgaa cgggaatgcc tcgccgtaat      4500
     cttggccata gagaagtttc gacactatgt ggagggcacc agattcaagg tcgtcaccga      4560
     cgcgcaatcg ctgaagtggc ttaatcaggt cagcattgag ggcaactccg cgcggctggt      4620
     cagatgggca ctgaaactgc agcaacacga catcatcctg gaatatagga aagggaagtt      4680
     aaacgtggtg gcagatgccc tgtccagagc tgttccagaa ccggatgtgt tcacgataga      4740
     tctagatctc gagcggctca agaagaacat cgccaaggat gaggagcggt acaaagactt      4800
     ccgggtgatc cgaggaaagg tctataagtt cgttgctagc tcaactccaa acgatcaacg      4860
     attcgagtgg aagatggttc ctacgaaagc cgaacgcata ctgattctgg acgccgagca      4920
     cagcgtggcc cacttcgggt tctacaaaac gttgaaaaag atccaggaga agtactactg      4980
     gcccggcatg accgtcgacg tgaagcggtt ctgtcgaggc tgtgaagtct gcagaacctc      5040
     gaaatatccc aacacagctc gagttccgcc gataggtcga tcaaaggtgg ctagcatgcc      5100
     ctggcagatg atttccgtcg actacatggg accatttccc cggtctaagc acgggaacac      5160
     ggtcctgttg gtgatcaccg accatttctc gaaattcgtg atcattcaac caatgaggga      5220
     ggccaagact accgccctag tggcgtttct ggaatcgatg gtatttttgc agttcggggt      5280
     ccccgaaatc gtaatctctg acaacggacc gcaatttaaa tccgcgttgt ttgggaactt      5340
     gttgaaaagg tacaaggtta atcactggaa gaatgcgagc taccacccgg ccaacaatcc      5400
     gaccgaacga gtgaaccgag tcattgttgc ggccattcgg acgtacctca aggacgatca      5460
     acgcgaatgg gacgaaaata tcaaccaagt ggcccttgcc atcaggaccg cagtacacga      5520
     atctaccgag tttacgccct acttcatcaa tcatgggcgc aactatatca gttccgggga      5580
     agaatattcg cggatcaggg aaaccaacgg aggaacagaa caggaagccg agaaactggg      5640
     agaggacatg aaaataatat ttgaaaaagt gaaactcaac ctaaaaaaag cttacgatcg      5700
     ctacgggaag tattataatc tccgttcgaa agcgaaagcc cccacttttg aaaaagggga      5760
     agtagtgttg aagaaaaatt atgggttatc taataaggcg aaaagattta acgctaaatt      5820
     agcaaacact tactctcccg ccaaggttat cgccaagttg ggtagtcatt gctacgaact      5880
     ggaagattta accggtcaaa aattgggagt tttccgttcc gcggatctcc agaaacgttg      5940
     atcttgggat aagaaagcac tagcttgtac aactctaaac taaactaaag tacattgagg      6000
     gtaaacaaac caaaccagac ttaccatcat tttttctttt attctcttct ttgcaaaaca      6060
     ataaacaata ccccattcaa acactcccac ttttcatttt ccttaagtaa acactcccct      6120
     aaaccatgcc acaatactag ccaccaccac caccactatt tacttaattt agttaataaa      6180
     tttttagaaa taactcgaag aatatttaga taaaagttca taaaccgcaa accagagcgg      6240
     aaaaaaactc gcgacgggac tgacgtttga attgttttga tttgccgagg ttgtcggtct      6300
     gcaagtcggt aaagcggttt agtacacgag agcaaaaagc cagtggcgta cgctctcaga      6360
     ctaggttaga aaaaaagagt aggaaaagat aaaactttag gcggaattta tggaaccaaa      6420
     ctgagttcaa caaaggtact aaaattagcc attttgttcg gataactatc tgaaacggag      6480
     gagtatatct cctaacaagg gaatacattg ttctatagct gaattcaata agcggcaaga      6540
     gaaggaatga ccttcagtta tgattcacgc ggaatcgagt acgggtcata gtggattttt      6600
     atctgcaagt cgtataataa acgggaaaaa tcgaaattag gaagaacacg taatctgaag      6660
     aagcaggact acaaatagta atccagtgcg cttcgtaaac gaaataaaat gtggattagt      6720
     tacgctgtgg ttctaagaat aatcgttgag aactaaaata ataagtaagg aacaaaagcg      6780
     ccctcatcaa ttcagtttaa gtgatcgtat aagtgtaaaa aaaattcttg cataattttt      6840
     tttttgttga ggaaggggga aa                                               6862
//
ID   Gypsy-67_CQ-LTR repbase;    DNA;    INV; 1591 BP.
XX
AC   AAWU01019862;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_CQ_;
KW   Gypsy-67_CQ-I; Gypsy-67_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1591
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 514-514 (2011).
XX
DR   GenBank; AAWU01019862; Positions   77496   75906.
XX
SQ   Sequence 1591 BP; 401 A; 406 C; 408 G; 376 T; 0 other;
     tgtaacctgg ttacaggaac cacctatcga ttcgttgtat gtgcactcca tacgaggcga        60
     aagttaccta aactacccta acgaacatgg aaagcagcgt tgcattatct ttcccttcgg       120
     caccttcagt gcctctggcg gcattcgctg gaacttctca ctctaaccga gtcacagaac       180
     agtactcatc gttcgccgaa tacttaacac atataatgtc cataaaaccc gaagggcacc       240
     tcgtctgtat ttgtgacggg gggaccttgt ccttggaacg tagcgggccc aaggttaagg       300
     caacgacagg tcttttcaat ttgaccggca agctgtgcac acgcgtgtgt ccaagtggaa       360
     gtacaatcag cgaagcggcc gcagagtttg ccgatcgtca tagtgagtgg caagaagaag       420
     attaggttca acttgtgatc taattgtacc ttcctaaatt ttagttcaaa ttgaaacctg       480
     tggttttgaa cgttttacta ggcccaacga gccgataggg agtgtgcttt gtgagtagat       540
     agattatttg tagctcggtt caaaccttta aaacatgtgc actctgtagc ttaggagagc       600
     cgaccgagtg acgtcaacct aacacgcggt catcccaacc caaccgtaat acgcttgggc       660
     gaggccaggt aattttcttg gatctgaaga tcgtattgta accatgtgtg aaaagtttgg       720
     taactcgtgc gtgaatttct ttattgaagg actattcctt caattgaagg tgttagtctc       780
     gggcaggtgt aggattcggc gaccaccacg ccggctctgc gggacggtcc ggagacccgg       840
     agggtccgcg acccgaaacc cgcgtgcgca cctgtgggcc aggaggtcac cacaacctct       900
     gggacggagg gactcggtag tcaattgccg aacttccatc cccggcctcg aaccaagcca       960
     ccccggggaa gttgaacgcg gcccagccac actggccgtc gagcacgtga cgcgtgcaac      1020
     ccatctgcgt aagcctgatc agctgcattt agtacaacaa gccaagtcac caacccagca      1080
     ccagccgaac agccgccgac gccgacgccg gcgccttcgc cgcctcgtca ccaccagcat      1140
     gcagaatcca ggtcagaccc accctttgtt attctaaaaa tagacaccag tgcgatgcat      1200
     gaaccaaagc gttacgggaa aaggttagac taatgttagg gaataagaat tagcaggtca      1260
     atgtccggac aaataaacta tcgagctaca cgtcgtcgtg tttccgtttg ccctaaaaat      1320
     taaagggttg ttgttgtttt acacgcgaaa ctcctggata aggtctccta gttttaagga      1380
     tattctatgt ggagggttgt cgttgagcga tgttgttggg gttcgaatag tggcttcggg      1440
     acaagaaaat gaactcgccc tgagcgagct agaccgggac gtaacgaaca cgctgctttg      1500
     catgtacctt gggaactcgg tacttggcgc ttaagcggag tagcagaatc tccctgaacc      1560
     cttgccgttc agcagcgacg cgcttgttac a                                     1591
//
ID   Gypsy-67_DEl-I repbase;    DNA;    INV; 5577 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_DEl-I;
KW   Gypsy-67_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5577
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7031-7031 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 5577 BP; 1766 A; 1134 C; 1249 G; 1427 T; 1 other;
     ggcgcccaac acttattacc cacacctaga gaagaaattg taagtgattt gttctgaaac        60
     aaaactttta atcgctcaaa ttttcaataa aggtcacata aaagcacaaa tcgtcgtacg       120
     catgcgtgga tcacattttt ttttgtttaa agcagcagcg tggaaacgta cagtttagtg       180
     tcttcgaggc agttcgaaaa gctcttgcaa ttcgccgctc tttcccctta tctttaattt       240
     gcttcgttct ctttttttgt gttaaagaaa cagtgatttt catgagctgg gttgattcgt       300
     atagagaggt taggagcgag tacgaaagtg acgatagtgt tgaattggaa gttaataaat       360
     atttggaaaa aaaagccaac atgaacgcta acgaggtgaa agcgcttttg gccaatgcct       420
     tagccgatca agaggcaatc tttcaggcgc gtttaaatga aatgcaaagg caattgaatg       480
     aattacgtgt ggaggmgcca cacgttgaaa cgtaccaacg gatttcagta gacccagcgg       540
     tgaggtgcga catcccgctt gacattatca aatctatccc agactttagt ggcgtgcaag       600
     atgagtatgt ggcgtggagg caatcagcca cagacgcata cgaactcttc gcacctttta       660
     gtggtagctg tgcacattat caggcagtca cgattattag gaataaaatt aagggtccgg       720
     caagagcatt gttggtgtca cacaacaccg tgctcaattt cgatgctatt atagccagat       780
     tggactgcac gtatgcagat aagacttcct tgcgtcttct gcggcaggga ttagacatgg       840
     taaggcaagg cgattcgagc ctaatgcagt actatgatga ggtggaaagg aagttgactc       900
     tcgtaaccaa taagatcgtt atgtcccacg agcctcaggc agcagcattg ctcaaccaag       960
     aggtcagagt cgatgcgctg cacgcgttta tatcaggatt aaaaaagtct ttaaaatcgg      1020
     tagtatttcc agctcagcca aaagacttgc caaccgcttt ggcattggct agagaagcag      1080
     aagccagtat tgagcgtagc gtattttcgg cttcgtacgc caaagctata gaggaaaagg      1140
     ctcaagggat tgaaaaaagt cgttcacagg ctaggcatgg caaaaacttc agggacgaac      1200
     gggttcatgg ctatgaaaga aaccctcatt ttgtcaagaa acagcagcaa ggcagcgatg      1260
     aacaagaaaa aaatgttgtg gttacccaag ttcaaagccc agagccaatg gacatagact      1320
     tgtcctccaa atttaggcag cgcactgatt tcgggaaacc tcagtctaat actgtacaaa      1380
     cctacaagag acgagactcc tccgagcgta tgactggtca aaggcgtcag agattgaata      1440
     atatcaatca acaagcccaa gagcaggaca cccagaagta cggggaggtg gcttcagcgg      1500
     cagctgcagc tattgttgac gaccttgagt cggatagtga acgtgactca cttaattttt      1560
     tagtgcacgc tcccggttgc cttttgtcga gaggcaactg gctgggagga aattaagaat      1620
     actgattgac actggagcgg cgaaaaacta tattaagcct ataagtggcc ttaaaggtat      1680
     agttcaagtc gactctccat ttaccgttag ttcaatacac ggttctaacg ccatccggca      1740
     aaagtgtcag atgcatattt ttggagttaa aactcctttc tttttattaa attcgttaac      1800
     agcgtttgat gggataatag gccttgatct gttaacacag gtgggggcaa cgctggattt      1860
     gaagcaagat ttaatagtat atggggatgt agcagaaaag ttacagtatc agagctgcga      1920
     caatgtcaat tttacccatg tcgatgacat agttgtgcca gacaccgtgc gtaaggagtt      1980
     cagaagcgta attcttaaca gaatcaaagt tttttcgagc cccaatgagg cactgccttt      2040
     taacacatcg atagtagcta cgattcgcac agaagacagc cagccaattt attcaaaatt      2100
     atacccttac cctatgggag tagcgcactt cgtgaataac gaaattaagc aattgctgaa      2160
     agatggcatc attaggccat caagatcccc atataacagc cctgtatggg ttgtagacaa      2220
     aaaaggaact gatgccagtg gcaacaggaa taagcggctg gtaattgatt ttcgcaaatt      2280
     aaatgagcga accattgctg atcgctaccc aatgccaagt atccccatga ttcttgcaaa      2340
     tctgggaaag gccaagtttt tcaccaccct agacttaagg tcagggtacc atcaaattta      2400
     ccttgcggaa caggaccgtg agaagacatc cttttcagtt aacggcggga agtatgagta      2460
     ttgtcgtcta cccttcggct taaagaatgc gggaagcatc tttcagagag caatagatga      2520
     cgttttaagg gaccagatag gaaaaatctg ctacgtctat gtggatgacg ttatcatttt      2580
     ctctgaggat gagctcgatc acgttaagca catagacacg gtattaaaat gcctgtgtga      2640
     cgctaacatg cgagtatcac gcgagaagac aaaatttttt aaagaaagcg tcgaatattt      2700
     gggctttata gtaactaggg caggcacaaa gtcagacccc gaaaaggtta ggtgcataca      2760
     agagttcccc gaaccaaaaa atctctttag ccttagatct tttcttggcc tcgctagcta      2820
     ttatagaaga ttcgtcaaag atttcgcatc aatcgcaaga ccattgacag acttgcttaa      2880
     aggcgaaaac ggtacggtta gcaagcatgt ctcgaaaaac gtcaaaattg aatttaatga      2940
     aatacaccgt gacgcattcg agcgcttgag aaacatttta gcgtcggagg atgtaattct      3000
     tatgtacccc gattttaaac ggccttttga ccttaccact gacgcttctg caaatggtat      3060
     tggtgctgtt ttatcccaag gaggtaggcc gatcactatg atttcccgaa ctcttaaaca      3120
     aagcgagtca cactacgcta ctaatgaaag agaacttttg gcaatcgtgt gggcgttggg      3180
     gaaattgcag aattttttgt acggcaccaa ggatataaac attttcaccg accatcaacc      3240
     gcttaccttt gcggtctcag atagaaacac gaacgcaaaa attaagcgat ggaaagcttt      3300
     tattgatgag cataatgcca aagttttcta taagccagga aaggaaaatt tcgtagctga      3360
     tgccttgtct cggcaaaacc tgaatgcctt acaaaatgag gttcaatctg atgccgctac      3420
     tgtacatagc gaagtgtctc agacctatac catcgagact acagataagc cgctcaattg      3480
     cttcagaaac caaataattc tggaggaagc gcagtttcct ttgaagcgca cgtttgtact      3540
     ctttcgcgaa aaggtgcgac atcacataca tttcactcac gatgatgaag cacttcaaga      3600
     ggcaaaaaag gtggttcagc caaacctcgt aaacgcgatt cgttgcaatc tgcacatttt      3660
     ggcttattta cagcatgagc tcgtaaaaac ctttccggga acaaaatttt ggtactgtaa      3720
     gacaatggtg accgatataa ctgacagggc cgaacaaaaa gagatagtta tagccgaaca      3780
     cagtcgcgct catagagcgg cacaagaaaa tgttaagcaa attcttggcg attactattt      3840
     cccaaaaatg gctaagctgg tcacagaggt aatagtgaac tgtaatgtct gcaatagagc      3900
     caaatacgac agacatccta aaaaacagga gctaggtgta accccaatac catcttatgc      3960
     tggtgagatt ctccacatcg atgtcttttc tactgataaa aagctatttt tgacatgcat      4020
     cgataagttt tctaaatttg ctattactca gccaatagta tctcggtcaa taacggatat      4080
     taagatccct attgttcagc ttgtaaacgt ctttcccaaa accaaagtaa tctactgtga      4140
     caatgaagca gcgtttaact ctgaaactat taggtcgctc ttaaaaaatc agtttggtat      4200
     cgacgttgtc aacgcacctc cactgcatag ttcgtcaaat gggcaagtgg aacgcctcca      4260
     cagcacttta ctagagatcg caaggtgcct aaagttggaa aagaagtttg aagatacaat      4320
     tgagagtatt atgcaagcga ctgtagaata taataggact attcattcgg ttactggaat      4380
     aaagcctata gacgcaattt acgcttcgag tgaagagttt aaagaaaaca tcaagaacag      4440
     gttaataaac gctcagcaag ctcaactaga aagaaataac ccttcccgac aaaacaggat      4500
     attcgaggta ggggaaaagg tgttcctaaa aaacaacaag agattaggca acaagctaac      4560
     acctttattt tctgaagaga aagttcaggc agacctggga acgtctgttc ttataaaggg      4620
     gaggctggtc cacaaggaca atttaagata atcgcatatc tattgaaagt taggataaat      4680
     tagtaaactt gaacacggaa acactgaatg gagcttgtga aagaatttaa gggaaaagga      4740
     ggaatggcat actcgatgca aatgactctt acgtgaaacg ctgttggcca agaattgaat      4800
     gcggtttcta atgcttactc tcacagaatc aaatgcttat ttttagccaa agcgatttaa      4860
     agttataatt tacagaacat ttcacagtaa ttttttagtc tgtccgttaa agggtgcaaa      4920
     tctgctggtg gcacataaga gcgccgtgct gcaacaaata ggcgacactg tagctgaatg      4980
     cgtcaacgga actctgccgt aagagactgg cgaaccacta attgcatact aagctatatc      5040
     gcaaaacgtt tccactcgtc gactgtatgc cggagtttga ccgaatcctg catgtatcca      5100
     aataatatca catcgattac aatgatgaag agagagcggt cctgatacaa gaaaaactgg      5160
     caagacacaa aaccaatgaa ggaccgagaa gatgtgcgaa cgatctgcct ttcaatatct      5220
     ttaaacgatc ggcaatagct atcagcaccg agatatttat gtctttgtga agtgtctgca      5280
     taatttgagg atctgtcgtc tctccattaa caatatcatt gcacatgact cggcattacg      5340
     tctacgcagc aaggatgccc acgaatgaaa taaaaggtcc tccaaggcgt cgaatataaa      5400
     tactgacgaa agttgacgag tcatctaaga atcagttgtg gctattgcag tggctcctgg      5460
     tcttcaaagg ctcaaacctc ctttacccat gaataaggag gcaacgaact gcaacggaga      5520
     tccagatggc cgataatggt tggcattgcc cgggacggtc aaacttaagg ggggaat         5577
//
ID   Gypsy-67_DEl-LTR repbase;    DNA;    INV; 515 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_DEl-I;
KW   Gypsy-67_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-515
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7061-7061 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 515 BP; 126 A; 135 C; 101 G; 153 T; 0 other;
     agtaaacaag ttaccctcgc gctgagctag caggtgaatt gctgtgatat actgtcgctc        60
     gctcccaatg cgagagcagc attatcacgt atgctaagtc ggctggccga ctacacttgg       120
     tagcttatgc tcatttcttt atctctctct ctctctctct ctctctctct cttagcataa       180
     tctcccttca tagcatagtt taagtatact tatttttgta acctagtttt agttgtactt       240
     ggcacgtaaa gcaagcagaa gcttgaaata aacttctaca ccagctatag ctgatattct       300
     tatttattgt tgctaagcca caaggctagt aactggtacc cagataccca acctaatctt       360
     catttccttg ctccacaact ggagcggctt cgacagtgga taccccggca actcccttgc       420
     aggagctggc aagttggtcc ataccctgac tggagtcgga cagcagccgt gacgaaaagg       480
     tcccctggca gcaccttata tgtagaagct ttact                                  515
//
ID   Gypsy-67_LMi-I repbase;    DNA;    INV; 3955 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 20.01, Created)
DT   02-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-67_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3955
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (02-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           443..1738
FT                 /product="Gypsy-67_LMi-I_1p"
FT                 /translation="MPRARSLNRPDMSQSEEISPALLKLFQQMSDKISEQL
FT                 SSKISEQSKEFNNIYDKFEDLSHELKKNNESMTVKLDKHIQNCQENYTKII
FT                 EDVSTLRELIVPREEIIELSNQIVQNKLESEKAILREQLSQNFKGTHELVE
FT                 SFKGEVNSKLLLLDQDIQSTCNRIDVLEGKSLSEMSQINKRFTIAEEKIDT
FT                 LERCQNITDVNLSLGDTIGNWEHKVEDLINKKFQEINSSSLQGVEDKSSDS
FT                 ELASHQFDKLWAELERTKAELNSKKSVNPNNLSNSQVISPQSSNGDGXNFT
FT                 SGINLSKQLPKFKPNGDVHPNHFLRVFSRMLPNTWPDSQKIDFVLCYLVGT
FT                 ASDWGNANADNFTSWEDFKKKFKEQYWSDTTQENLKFELSDPKPYNKSLGS
FT                 IKQYIQDYLMKAKFLESHKLPSSFTNGVVLILFHIFPM"
XX
SQ   Sequence 3955 BP; 1327 A; 635 C; 820 G; 1171 T; 2 other;
     aagttggcgc cctagaagac aggaccaagc caaagaagat tgggacaacc tggggactga        60
     aggcgaccgt gaaaaacgag aattattgaa gtattaatac gggatttcgg tacgaaaatc       120
     gaggcaaata aactggttgc ttatggttac cgaaatcaac aacgatcaaa tcgtcgactt       180
     gatagcctaa gacgacgatt ataaatactg ggaagaaaga atacgccgcc agaacgggaa       240
     gaaacaactg ctgctgtttc gggtcaacgc ttcaaccggc cgacgagacg cgggactaca       300
     gtttccacgt tgccgcttca caacgatcgt cgtagcagcc gacccaaatc ttccgatgtg       360
     gtgcgagctg tgaacctgtg gtgagcgtaa ccagtcttaa tattatactg tgttgaactt       420
     taatttttgt aggagtgatt tcatgccgcg agctagaagt ttaaatagac cagacatgtc       480
     acaatcggag gaaatttccc ctgctttgtt gaaacttttt caacaaatgt cagataaaat       540
     tagtgaacag ttatcatcta aaatcagtga acagtctaaa gaatttaata atatttatga       600
     taaatttgag gatctgtcac atgaattgaa gaaaaataac gaatctatga ctgtaaaatt       660
     agataaacat attcaaaact gtcaggaaaa ttatactaaa attatagagg atgttagtac       720
     cttaagagaa ttgatagttc ctagagagga aataatagag ttgtccaatc aaattgtgca       780
     aaataaactt gaaagtgaga aagcaatctt aagagagcag ttatcacaga attttaaggg       840
     aacacacgag cttgtagaat catttaaagg agaggttaat tcaaaattgt tgttgttaga       900
     ccaagatata caatctacat gtaacagaat cgatgtttta gagggcaaat ctctctctga       960
     aatgtcacaa attaataaaa ggtttacgat agctgaggag aaaattgata ccttagaaag      1020
     gtgtcaaaat attacagatg taaatctatc cttgggtgat acaattggta attgggaaca      1080
     taaggttgaa gatcttatta acaaaaaatt tcaggagatt aatagtagca gtttacaagg      1140
     ggtagaagat aagagttcag attcagaatt agcaagtcac caatttgata aactttgggc      1200
     tgaattggaa cggacaaagg cagaattaaa ttctaaaaag tctgtcaacc ctaataacct      1260
     tagcaatagc caagtaattt cacctcaaag ttctaatggg gatggtttma atttcacttc      1320
     agggataaat ttatcgaaac aattgccaaa atttaaacct aatggtgatg ttcatcctaa      1380
     ccatttcctg agagttttct ctaggatgtt acctaataca tggccagatt cgcaaaaaat      1440
     agattttgtg ttgtgttatt tagtggggac tgcttcagac tggggtaatg caaacgcaga      1500
     taattttaca tcctgggaag attttaagaa aaaattcaag gaacagtatt ggtcagatac      1560
     tactcaagaa aatcttaagt ttgaactatc tgaccctaaa ccatataata agagtttagg      1620
     tagtattaaa caatatattc aggactatct tatgaaagct aagtttctag aaagtcacaa      1680
     actaccaagt tctttcacaa atggtgtggt ccttatattg tttcacatat tccccatgtg      1740
     aaagctgtac atttgaaaga ccctgactca ggtagtgaca aaggattata caatgtaamc      1800
     gctataaagc cttataaaaa cccttagaga tatgagaagt gtctttgtct aaagaaacct      1860
     atatgagact ttaatcctgg atttgacaaa acttaatacc atgatatgag gttattttgt      1920
     agttacatat ctatgtagtt attataaatt atattgtatt tattctttgt tttctgatga      1980
     atgtctgcta aagaggcaga aagtatctat ttgtctctaa atggaagaga ctatacttta      2040
     gtaattaata atatttatat tgggtaattt tatacttttg taaacatttc atgagtaata      2100
     acatggggaa gggttattac ttcattttct aggggaggtt tgttcagttt gtagttggat      2160
     atgctacaaa ctaagggtag gtacacaatc acacacacac agctacacat acacatttta      2220
     cacacacgca cactgcacaa acaggcgctg ttattcactc ttcatggcac tgcaatagag      2280
     ggagttggag cttttcttcg ggggatcttg aaagcggcct ttcacgtccg ttctgtagcg      2340
     gggcagctca catctagcct gccatctttt gccctccggt gtgttaggtg ccatgctgga      2400
     tagatcaggg gtttcctggg gtggggggtg gggggagtgt ttcctgtctt tggggtctgt      2460
     cttcttttct ctttgctcca acaccctgtg cttccttttc ctttcttact tctctaaatg      2520
     agtaccagtc tatagtcccc tatccactaa gcaaagtctt tatcgctaag acccttctac      2580
     cctgagggta tgcctgagga ataacacgct acacttttta aaaaattaca ctaatgcaca      2640
     aacatcaatt cacacaaaca tttatacaca aagcttacat tattacactt atgatacaac      2700
     agtacataac attacacaca catacatgag acttaggttt taataacggc ggaaaggtat      2760
     gtttaaatac tatggaaaat gtatagaata taggtgggta acatattcac tagattagat      2820
     gaaaacatgt tgcaggtctg tgtcaaaacg gtatataacc tacaatgttg gtatcgtctt      2880
     agtcatactg caatgttaaa ttttagttat cggtcttgtt gacgaacatt gctacacgtg      2940
     agtgaacaat tgacgactat tcgctgacaa acgacaacca atattccttg ccagcggaag      3000
     cttgtttaga tgcagcggcg tggatatttg acacagtcca tatcaacaaa tcatttcgaa      3060
     gcaacaaagt tgtgcctccg aatcacaata tagatctaaa gtaatggttt agacattagt      3120
     catagaatgt agtgtatatg aaacattcaa catcaggaaa caaagtgata agtgatatat      3180
     tagtttcttt actcactgta cactcgtttc gggtgtgggg aagaagtgag aaggagaatt      3240
     acgagtgcac attagtaaag tgaaaaggta agatagaaaa taagctgggg aagggacatt      3300
     tgaggcataa ataagaagtg aagtaggtgg aaaggagctg tcctcagtga actaagaggt      3360
     gaagagagtg gttgttgtgg gttattagta gggtaagcag acccaagaaa gaggctgcta      3420
     tcctaggtca ggggcctaaa agagaggatc tgacaattcc cagaggggtg tacagtcaag      3480
     gaagggcttg atgtcaccta aggaatagac aagataggat ggctattcca aatatttttt      3540
     tttttttttt ttgcttgagg cagcaatggg ttacctatct ttatgttgaa ttgaaacctc      3600
     aagttcccaa ttaaaaaggt tacccaggaa taagttgaat atctatagaa aaagaattta      3660
     cagtgcatat tcctcatttc gaaagagata tcagtgagat ttcagagagg agaaacttta      3720
     aagaaattaa tttatgtttg agcttaactt tgtaatgaag gtacttatct agtgaagtat      3780
     agatttcctg atggctttga atgttaaaat taaacacaaa ataagttgcc accactaata      3840
     cataatgcaa ctacttacct tatttgttat ggataaaaga ttatactttg tatgtaaatg      3900
     tgtattggga ggttgaagta aacaatttga tatcttgtgt ctgagtgggg ggatc           3955
//
ID   Gypsy-67_LMi-LTR repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 20.01, Created)
DT   02-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-581
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (02-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 581 BP; 192 A; 86 C; 125 G; 178 T; 0 other;
     tgtagtgtaa cattgtacac tactggtttc tagctcgacc caagatattc aaatagttta        60
     tgttataagg ggtttggcac tgtgtgagca aatactgcca gacggaattt atttccgcag       120
     gttttggcgg gtgaatttgt gctcactgcc acggagtaaa agaactgcac agtgccaagg       180
     aagagagaag attaaggtta tttgaagatg actgtctgtt gttttatgat ttaaagcaat       240
     tgttattctt aattaggatt tcgttcagtc catatcagaa tcagaaatgt aaaactgatg       300
     tagttcttaa cgaagaaaga ataaagttta atgttattgg aaagaatagt tatctttcaa       360
     atgtagatat ggacaaaatt tccaggtgtc ctgataacca tatcaagcaa cttcggatac       420
     tagtctgatt ataacgacta ttttctttca atacaaggta cggactagcc ggaccttgtg       480
     ggaagaacag cttgaactat atattatatc ctgaaatgaa caggcaaagg tattatttgt       540
     gctgtggaaa tactgaaaga aaaatacacg gtgacagcac a                           581
//
ID   Gypsy-67_SpEx-I repbase;    DNA;    INV; 5806 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5806
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6949-6949 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           301..5052
FT                 /product="Gypsy-67_SpEx-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MTGERKSRRRNRESSSSSSGSEPAVRRRRTCRDRDES
FT                 GGSRTSASRNHRARHSNPGSRRRRESAQVRGASRVCGAPRVRDASRVRDAS
FT                 RVRDASRVRDASRVRDASRVRDASRVRVASPGQETVHSHGASWNREMPQGH
FT                 NQDIAGASCSGATPAVVVSPFHSNKELNANTNVLVSVFKELMQTMKADGGN
FT                 ERFPVLNVIPEFDPSKRTQTVETWINKVNECSQIYNWTERQTLHYALPKLA
FT                 GLAQKWYQGLPSMLFSWSEWQNKLKLAFPSDQNYGQLLTEMLACKAEFGES
FT                 LEEYFYQKVVLLNRCNIHGKNAIDCILFGIEDRSVRTSAEATQFTEPDKLL
FT                 VYLRNIRTTKKYNKPNSSLRVGNADNKQSKTLKGTQNEHDGNNRNYRLTKC
FT                 YNCGEEGHPYFKCKLPIKRCDKCRQVGHLAGGCPGTKESNTNNKTVLRIAS
FT                 EPDSDSKYFKSAVVNGLNLDCFIDFGSQCSMLQESVAKNLVSSWSISELPV
FT                 LRGFGDSVVNCLGKCYVEIKIDSVIATVETLIVPDKLLQVPLLLGQTFTEQ
FT                 EHIVVVKTNNQLKITTNIAKNVLVYVDNSLIIHGYTLVTIHTKPKFTGNLF
FT                 IEPSFCQDTHKQYEIIQSVVQVNDGQGTVVVKGLNSGFKLLKDTLLLRALP
FT                 LSESQALNVGRIEHCPDNTVTPQIKPSMVQIDDDIGSEHKTKLMELLNEFR
FT                 DCFAFSAKELGCISGTEMNINLSDTTPVVYRPYRLSYSERHVVRDMIQDLT
FT                 DSEIIRQSSSNYASPIVLVRKKNGDHRLCIDFRALNKKTIKEHYPMPRIDD
FT                 QLDNLSGHKYFTSLDLASGYYQIPMAESAKHLTAFVTPDGHYEFNRMPFGL
FT                 VNAPSTFQRAVNSVLGNARFKEAFAYMDDVIIPSRTIEEGLHKLHDILSLF
FT                 RSSGITLNISKCNFLKQSIDYLGFEVSASGVKPGSKKTEAVDQFPRPTDQH
FT                 KVRQFVGLASFFRKFIRGFSIIAKPLTRLLKKDSKWHWGEAEESAFLNLKT
FT                 ELVKRPTLSFYNPEFETQLHTDASKVGVAGILMQRPNKDVSFSAVAFYSRQ
FT                 TSPEEAKFTSYDLETLAVVTSLQRFRVYLLGIHFTIVTDCNSLRATFEKRD
FT                 ILPRVARWWSTIQEFDFEIIYKPGTGMTHVDALSRNPIPSEIIELEVRRID
FT                 TDWVATVQQNDPELQRIIAILNDKENDNIIDIKNNFVVKRGLLYRKTDTGD
FT                 RWVVPKGVRWQILKSNHDEIGHFGLDKTLEIIKNNFWFSKMRRFTKKYVQS
FT                 CLECAHSKIPTGKKSGQLHPIEKVEQPFHTIHIDHLGPFVRSKHKNAYLLL
FT                 IVDAFTKFMIIVPVKSTKSIHSIKAMKNYFHTFSVPKRVISDRGTSFTSKA
FT                 FRDYLSSLGIKHVMNAVATPRANGQVERYNRSVLAALTASNYGKPENEWDE
FT                 HISEIQWGFNNTLNKGTGKSPAQALFGLNLVSTSNALLQLNVTDDIESTTS
FT                 SLEETRQEISGYVKENQKKQKERFDKARKEVNYNVGELVRVERDIPSVGQS
FT                 RKLVPRLRGPYRIAEVLDNDRYVIEDTPLSKKGNRKFSGIFSVDKIHPWVV
FT                 FNRSDSESETSDNDHTD"
XX
SQ   Sequence 5806 BP; 1874 A; 990 C; 1279 G; 1662 T; 1 other;
     gttcagaagt gggataaaat ccagatagcg actaataatc gtcctgggtg aaagattcaa        60
     cgcctataga aggtaatgcc aaacttttct ctacttatga ttagcttaaa taacgagacc       120
     tttaacgttt ggcaaataaa tggttaataa ctttcaagca aaactggtgc tttaacatac       180
     attttttttt aaggctttta tttagtcatt ctgttttgtg taatatttaa aagattatta       240
     ctaatatttt aggaggtaaa agaacaatga ctttttgtaa tttatttatt tctagcaaca       300
     atgactggcg aaagaaagtc tcgacgacgc aacagggagt ctagctcgtc atcaagtggc       360
     tctgagcctg cggtgcggag acgtcgcact tgccgcgatc gtgacgagtc aggtggatcg       420
     agaacaagcg cgtcgaggaa tcatcgtgca cgtcatagca accctggttc aaggcgtcgg       480
     cgagaatcgg cgcaggtgcg tggtgcgtcg cgggtgtgtg gtgcgccgcg ggtgcgtgat       540
     gcgtcgcggg tgcgtgatgc gtcgcgggta cgtgatgcgt cgcgggtgcg tgatgcgtcg       600
     cgggtgcgtg atgcgtcgcg ggtgcgtgat gcgtcgcggg tacgtgttgc gtcgccaggt       660
     caggagacgg ttcacagtca cggagcctca tggaatcgtg agatgccgca aggacataat       720
     caagacatag ctggagcatc atgttcgggc gctacgccag cggtagtggt gagtcctttc       780
     cattctaata aagaattaaa tgctaatact aacgttttag tttctgtttt taaagagctc       840
     atgcagacca tgaaagcaga tgggggtaat gaacgttttc cggttttaaa tgttataccg       900
     gaatttgacc ctagtaaacg aactcaaaca gtagaaacat ggataaataa agtaaacgag       960
     tgttctcaaa tatataattg gaccgaaagg caaactctcc actatgctct tcctaaatta      1020
     gcggggttgg ctcagaaatg gtaccaaggc ctacctagca tgttgttttc atggtctgaa      1080
     tggcagaaca aattgaaatt ggcatttcca agtgaccaaa actatggtca gctattaacg      1140
     gaaatgctag cttgtaaggc tgaatttggc gagtccttag aagaatattt ctatcaaaag      1200
     gttgtcttgt tgaatcggtg taacatacac ggtaaaaatg caatagactg tattttgttt      1260
     gggattgaag ataggtccgt cagaacaagt gcagaagcca cacaattcac ggaacctgat      1320
     aaattattag tatatctcag aaatataaga actaccaaga agtataacaa gccaaattca      1380
     tccttgcggg taggcaacgc agataacaaa caatctaaga cattaaaagg aactcaaaat      1440
     gagcatgatg ggaacaatag gaactatagg cttacaaaat gctataattg cggtgaagag      1500
     gggcacccat atttcaaatg taaactacca atcaagcgct gtgacaaatg tcgacaagta      1560
     gggcacttag ctggtggttg tccgggcacc aaagaatcta atactaataa taaaacagtt      1620
     ttaagaattg catcagagcc cgatagtgac tctaaatatt ttaaaagtgc cgttgttaat      1680
     ggtttaaatt tagattgttt tatagatttt ggaagtcaat gttccatgct gcaggaatct      1740
     gtggctaaga atttggttag ctcatggtct atatcagaac taccggtatt gagaggtttt      1800
     ggggatagtg ttgtaaattg cttaggtaaa tgctatgttg agataaaaat agattcagtc      1860
     attgctacgg tagaaactct tatagtgcct gataaactat tacaagttcc tctactctta      1920
     ggacaaacat tcacggaaca agaacatatt gttgttgtaa agactaacaa ccagcttaaa      1980
     ataaccacga atatagctaa aaacgtatta gtgtatgttg acaactcgct tatcatacat      2040
     gggtataccc tagtaactat tcatacaaaa ccaaagttta ctggcaactt atttatagaa      2100
     cctagttttt gccaggatac tcataaacag tacgaaatca ttcaaagtgt agtacaagta      2160
     aatgatgggc agggaactgt tgttgttaaa ggcctaaatt ctggattcaa attgctgaaa      2220
     gatactttat tgctccgggc tcttccatta agtgaatcac aggcattaaa tgttggcaga      2280
     atagaacatt gtcccgataa tactgtaaca ccccaaatta aaccctccat ggtacagatt      2340
     gatgacgata ttggatctga gcataagacc aaattaatgg aactgcttaa tgagtttagg      2400
     gactgttttg ctttttcggc aaaagaacta gggtgtataa gtggtacaga aatgaatata      2460
     aaccttagcg ataccactcc tgtagtatac agaccttata gattgtcgta ttcggaaagg      2520
     catgtagttc gtgacatgat tcaagactta actgactcgg aaataattag gcagtcatca      2580
     tcaaattacg catccccaat tgtattagta cgcaaaaaga acggtgacca ccgtctctgt      2640
     attgacttta gggcacttaa caaaaagacc ataaaagaac actatccaat gcctcgtata      2700
     gatgatcaat tagataatct atcaggtcat aaatatttta cttctctcga tctcgcctca      2760
     ggatattatc agattccaat ggcggaatcg gcaaagcatc taacagcttt tgtgacccca      2820
     gacggtcact atgaatttaa tcgaatgccg tttggactag ttaatgcgcc atcgacattt      2880
     caaagagctg ttaatagtgt tttggggaac gcgagattca aggaagcatt tgcttacatg      2940
     gatgacgtaa ttataccatc tagaaccata gaagaagggt tgcataaatt acatgatata      3000
     ttaagtctat tccgatcttc cggcatcaca ctaaatatat caaaatgtaa ttttctgaaa      3060
     caatccatag attatttagg ttttgaggtt agtgcatctg gagtaaaacc aggtagtaag      3120
     aaaaccgaag ccgtggatca atttcccaga ccaacagatc aacataaggt caggcaattt      3180
     gtagggctag cgagtttctt tcgtaaattt ataagagggt tttcaataat agcaaaacca      3240
     ctaacaagac tcttaaaaaa ggattcaaaa tggcattggg gagaagcaga agaatctgca      3300
     ttcttaaatc taaaaacgga attagttaaa cgacctactc tctcgtttta caatcccgaa      3360
     tttgaaacac agttgcatac agacgcgtct aaagtcggcg ttgctgggat cttaatgcaa      3420
     aggccaaata aagacgtttc ctttagtgcc gtggcatttt acagtagaca gacatcccct      3480
     gaggaagcca aattcacctc ctacgactta gagacgctag ctgtagtgac gtcgcttcag      3540
     agatttaggg tttatctatt agggattcat ttcacaatcg ttaccgattg caattcacta      3600
     cgtgcaacct ttgaaaagag agacatactg cctagagttg cacgatggtg gagcaccata      3660
     caagaatttg acttcgaaat aatttataaa ccaggcacag gtatgactca tgtagatgct      3720
     ctgagccgaa accctattcc atcagagata atagagctag aagtaagacg aattgataca      3780
     gattgggtgg ccacagtaca acaaaacgat cctgagttgc aaagaattat agctatatta      3840
     aatgataaag aaaatgacaa tattatagac attaaaaata attttgttgt gaaaagggga      3900
     ctattataca gaaaaacaga tactggtgat cgttgggttg taccgaaagg cgttcgatgg      3960
     caaattttga agtcaaacca tgatgaaatt ggacattttg gtcttgataa aactttagaa      4020
     ataattaaaa acaatttttg gttttctaag atgagacgat tcactaaaaa gtatgtmcag      4080
     tcatgtttag aatgtgctca ctccaaaata ccaactggaa aaaagtcagg ccaattacat      4140
     cccattgaga aggttgaaca accattccat actatacaca ttgatcattt aggtcccttt      4200
     gttcgaagta agcacaaaaa tgcatactta ttgttgattg ttgatgcttt cacgaagttt      4260
     atgataattg ttcctgttaa aagtactaaa tctatccatt ctatcaaggc tatgaaaaat      4320
     tattttcata catttagtgt tccaaaacgt gttatttctg atagaggtac gtcatttact      4380
     tccaaagctt ttcgtgatta tttaagttca ttagggatta aacatgtcat gaacgctgta      4440
     gcaaccccgc gggccaatgg tcaggtcgaa cgttataata gaagtgtttt agcagcatta      4500
     accgcttcca attatggcaa acctgaaaat gaatgggatg aacatatttc agaaattcag      4560
     tgggggttta ataatacact aaataagggt accgggaaaa gccctgctca ggcactattt      4620
     gggcttaatt tagttagtac ctcaaatgca ttattacagc ttaacgttac ggacgatatt      4680
     gaaagtacaa cctcctcgtt agaggaaact aggcaagaaa tctcagggta tgttaaggaa      4740
     aatcaaaaga aacaaaaaga acgtttcgat aaggctagga aagaagttaa ttataatgtg      4800
     ggagaacttg taagggttga aagggatatt ccatcagtag gacaaagtag gaaattagtt      4860
     ccaagacttc gaggtccgta tcgtatagcc gaggttctcg ataacgaccg atacgtaatt      4920
     gaggatacgc cgttatctaa aaagggaaat agaaaattca gtggcatctt ttcagtagat      4980
     aaaatccacc cctgggtagt ttttaataga tcagattccg agtctgagac gtcggataat      5040
     gaccacacag attaggtgcg attgattggt agtgatacat actattatat taactttaat      5100
     cctaagacta tatctgggaa tatgtctgag gtcccaggta agacaggtgt taaggatatg      5160
     tctgaggcct taacatctta agttgagtta agtggcttat ctgggaatat gtctgaggtc      5220
     ccaggtaaga caggtgttaa ggatatgtct gaggccttaa catcttaagt tgagttaagt      5280
     ggcttatctg ggaatatgtc tgaggtccca ggtaagacag gtgttaagga tatgtctgag      5340
     gccttgacat cttaagttga gttaagtggc ttatctggga atatgtctga ggtcccaggt      5400
     aagacaggtg ttaaggatat gtctgaggcc ttgacatctt aagttgagtt aagtggctta      5460
     tctgggaata tgtctgaggt cccaggtaag acaggtgtta aggatatgtc tgaggccttg      5520
     acatcttaga gttaagtggc ttatctggga atatgtctga ggtcccagct aagacaggtg      5580
     ttaaggatat gtctgaggcc ttgacatctt aaattaagtg gtttatctag ttaaataagt      5640
     atcgatccag ttgattgtta tgaatatgat gtattcttaa taattcaagt gttgtgtaaa      5700
     atttaagtag aaataagaaa atgcagaaat atttttatag ttgatttcat tactttatgt      5760
     gagaattaat tttcccgaga cgggaaatat gtcaggaaag gccgac                     5806
//
ID   Gypsy-67_SpEx-LTR repbase;    DNA;    INV; 382 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.12, Created)
DT   09-SEP-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-382
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 21(12), 6951-6951 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 382 BP; 120 A; 52 C; 65 G; 145 T; 0 other;
     tgttagaacc ctttctttga taatcgaact tccggaattc atacatcatt gttaaatatt        60
     atttcgacca attattatgt ttaaattata tcgttttatt taaaatctaa taacaaatat       120
     ttaaaagatg tttatttatt taatatcaat attaagtggt atcgtacgca ctacttccgg       180
     ttgtatcatt acattttatt ttaaaatatc attctatgcg gtttccggta aagacagata       240
     ttaagtgggg agtagtgcgc acgatagcgg gacattcggt gtcgaacagt caaggtggac       300
     acagttctta agtgctttgt gaaaagttat aataaaagct ttggctgata caaattggtt       360
     ttattattcc tgagcgttta ta                                                382
//
ID   Gypsy-67_TrVa-I repbase;    DNA;    INV; 6850 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-6850
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 312-312 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           373..2160
FT                 /product="Gypsy-67_TrVa-I_1p"
FT                 /translation="MSLPFAPELLKLSHVVYELAVRGETTEGDEANLRSDL
FT                 KAKLLLGMKPSLILLGKLDVDSELKIVEDELVFLEQTIDSYEHDPALRRDF
FT                 AIFAALEFNLRRVNNLLSVNAGEEERTKILDISKRIGDIIRGFKTQISLVS
FT                 LPNIQELSLNESSVTSSPTLVVSSSPSISTPGSVGSAQLVPSASGATPRTN
FT                 FLNPSAPVFPPPKGNSTMFSDACNRYSGPSKSSYSIVSSTAGLNNCSTIYG
FT                 HPVSASYGAPFLYPSTHQQFGTVGXVWSSHSQPSTVPINQVPFGVTVAQNY
FT                 SNQATLPVYDQSGFSFHPPPVTSTAIPLYRESCEPVSGDASSKQPKRSRVT
FT                 SSRFGKMPNPVERAFRKFPEIDGYDLDLLLKFLGTLIEIQEAHDFDDLDLL
FT                 RDVQPFTRKPLATRILSAIRSDLSFDEFHADVLHSFVPSRLSEQMALSAVN
FT                 RLQRSNEPFSSFVQDVCQMAKVLRVEKSETALVKAIYDNRNPVCRAHFASE
FT                 PVPRCFGDLDRLARLSQDLAYADSQRDVPTRRSNQPVRNNNVCNVSFPLID
FT                 VSQPPPPIPSGESRETAPLATRRGPVTCFSCGQLGHISRNCFRGQNSKN"
FT   CDS           2142..5360
FT                 /product="Gypsy-67_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GSEFKKLVTPRLRRGAKRAASAHLSVSAISKVSCPTR
FT                 TPLPFCQLSMGPLALSALLDSGSARSLISSEIFKRIQNSPQVKKVETIDLF
FT                 CYTATNEPMRVSQQATVHFKLGHFSWNFIFLISDTLHMDVILGSDFMNKSG
FT                 LVLDIQRSIYYFNFKPMSVFPISALKKPVSLSRQEPCFEVDALDAEVGETD
FT                 LSHLSVSEQEQVNCILDKYPEVLTANLGCTKVLEYDIGLNDSKPVRSTPYS
FT                 LAPPKMAFLRKHVDKLLAQGVIQPSKSAYSSPAFLVPKGEDDFRMVIDYRK
FT                 LNQSVDIEAVPLPDINTAFSWFSKAKYFCVLDLNSAYHQIPLSASSMPVTA
FT                 FCTPWGLYEFTRVPFGLATGAQVLTRLGNLLFNDLRFKNLVNFLDDYVLYA
FT                 ETFEELLSVLDEVLKRFKAAGITINPRKLQIAVQEIVYLGHKISHRGLEVD
FT                 SGRTRAIRDYPPPRDAKGIARFIGMINFYSKFIPRFAERAAPLNSLRRKGA
FT                 KFVWGTAQQSAFDDLKTCIIHPPVLRTPDFNKEFILQTDGSSIALGAVLLQ
FT                 EVDGVRMPIAYASRTLTEQERKYCAYEIECLGVLFGCDKFRVFLEHQEFLL
FT                 ECDNQALSWLLAHPRQLGRIGRWVMRIASLKFRVQHIRGTANIFADALSRM
FT                 FYVDDEVPPVVNVVKPSWPQFPMAHGDIGDHQMSDPELKAKILVLKNGELL
FT                 PKFSLRKGVLCCVSSRDKLPRIVLPTALIPMVFNYYHKSPFGGHLGVFKTL
FT                 NKIREHFIYSNMKADIHQRVRSCQECAFAKPSANTKLGKLVSEKPTRPLEK
FT                 IYFDYMGPMVRSKSGNRFLLVCVDAFSKYVWFSPTRNSTSQTTIKELTRIF
FT                 QCFGFPKFLASDNARAFTCPLFRNFVFNFGMTHIKTSPYHPQGNLAERVNR
FT                 NLKSALIAFHSKSQTSWDQNLAWLQIAFNAAKHESHQHSPFDIMFAFQPGH
FT                 PLSLLWSIDDILPDSLDKVTPNWRNIRDQLCKANERSGIRYNKGRSDSNFK
FT                 VDDLVLVKSFMLSNKAKKFMAKLAPRWIGPYQIKSFVSPVSVSLFDPTSGK
FT                 FVRTAHVSQLKPFSCK"
XX
SQ   Sequence 6850 BP; 1574 A; 1351 C; 1446 G; 2471 T; 8 other;
     aaatggtagc ctgagcgcgg ttctttttca cagtaccaat ttaatatctt ttgaaccaat        60
     taattttttg gcagtatgta gtaaaaaaaa aaaaaaaaga aaaatagtaa gactaaatct       120
     aggaaaagga aattattaat attttgtttg cgcgttaacc gttgaaaata tttttgtgtc       180
     tttaatcatg tgttttcttt tcagatcagc catgtgtaag ttttaatttt ttctctggtg       240
     tatttctatg ttttgttgtg tacgtcggtc agatttttga agctttgtga gtgagtttgt       300
     tgttttttgg gtcaagtttt atgtaattat tgtgttagtg tttttaagtg attttcaatt       360
     gtcggagaaa ttatgtcgct tccgttcgct cctgaacttt taaaattgtc tcatgttgtt       420
     tatgaattag cagttagagg agaaactact gagggcgatg aggctaatct taggtcggat       480
     ttaaaagcta aacttttatt gggcatgaaa ccaagtttga ttttgttggg taaattagat       540
     gttgacagtg agttgaagat cgttgaggat gagttggttt tcttggagca gactattgac       600
     agttatgagc atgatccagc tttacgacgg gactttgcga tttttgctgc gttggagttc       660
     aacttaagga gagtcaacaa tttgttgagt gtaaatgcgg gtgaggaaga gaggacaaag       720
     attctggata tttctaagcg tattggtgat attattcgag gttttaagac tcagatttcg       780
     ttggttagtc tccctaatat ccaggagctc tcacttaatg agtcttctgt gacttcctct       840
     cccactcttg ttgtttcttc ttctccttct atttccactc caggaagtgt tggctctgct       900
     cagttggttc cttcggcaag tggtgctacg cctcgcacaa atttcttgaa cccttcggct       960
     ccggtttttc cgcctcctaa gggcaactcc accatgtttt ccgatgcttg taataggtat      1020
     tcaggtccat ctaagtcttc ctattccatt gtttcttcta cggctggtct caataattgc      1080
     tcaaccatct atggtcatcc tgtaagtgct agttatggtg caccctttct gtatccgtcc      1140
     actcatcagc aatttggcac tgttggtwct gtttggagtt ctcattctca accttcgacg      1200
     gtccccatta atcaggttcc tttcggagtt actgtagccc aaaattattc taatcaggca      1260
     actcttcctg tgtatgatca gtctggtttt tcttttcatc ctccccctgt gacgtctacg      1320
     gctatccctc tataccggga atcttgcgaa ccagtctcgg gcgatgctag ttctaagcag      1380
     cccaagcgta gtcgagtaac aagcagtcgt tttggtaaga tgcctaaccc agttgaaaga      1440
     gcctttcgca agtttcccga gatagatgga tatgatctgg atttgttact gaaattccta      1500
     ggtactttaa ttgaaattca ggaggcacat gattttgatg atttagattt gctacgtgat      1560
     gtccaacctt ttactcgtaa acctttggct actaggatct tgtcagctat ccgctcggat      1620
     ttatctttcg atgaatttca tgccgatgtc ctccattctt tcgtgccaag tcgccttagc      1680
     gaacaaatgg cgttgtctgc ggtgaataga ttgcagcgtt ccaacgaacc tttcagttct      1740
     tttgttcagg atgtttgtca aatggctaag gttttacgag tagaaaagag cgaaacagct      1800
     ttggtaaaag ctatttatga taatcgaaat cctgtgtgta gagctcattt tgcttcggag      1860
     cctgtacctc gttgttttgg tgatctagac aggttagcta gattgtcgca ggatttggcc      1920
     tatgccgatt ctcagcggga tgttcccact cgtcgttcta atcagcctgt tagaaataat      1980
     aatgtttgta atgtgtcttt tcctcttatt gatgtgtcgc aaccccctcc gcctattcct      2040
     tctggggaga gcagagagac tgcgcctctg gctactcggc ggggacccgt aacttgtttt      2100
     tcgtgtggtc agcttggtca catttcccga aattgtttta ggggtcagaa ttcaaaaaac      2160
     tagttacgcc gcgtcttcgt cggggtgcca aacgcgcggc ctccgctcat ctttcggttt      2220
     ctgcaatctc aaaggtgagc tgtcctactc gcaccccttt accgttttgt cagttgtcaa      2280
     tgggtccttt agctttatcc gctcttctag attctgggag cgctcgctct ttgatttctt      2340
     ctgagatttt caagagaatt cagaattctc ctcaggttaa gaaagttgag acgattgatc      2400
     ttttctgtta tacggcaact aatgaaccca tgcgtgtttc acaacaagca acggtgcatt      2460
     ttaaattggg tcatttttcc tggaatttta tattcttgat ctcagacact ttgcatatgg      2520
     atgtcattct tggtagtgat tttatgaaca aatctggttt ggtgcttgat atccaacgtt      2580
     ccatttacta ttttaatttt aaaccgatga gtgtttttcc tatttctgcg ttgaaaaaac      2640
     ccgtttctct ctctcgacag gagccttgct tcgaagttga tgctttggac gctgaggtag      2700
     gtgagacgga cctatctcat ctgtccgttt cggaacagga gcaagtgaat tgcattttgg      2760
     acaagtatcc ggaagtttta acagcgaatt tgggttgcac caaggtatta gagtatgaca      2820
     ttggtctaaa tgattcgaaa cctgtcagga gcactcctta tagtttggcg cctcccaaaa      2880
     tggccttctt gagaaaacat gttgataaat tacttgccca aggtgtaatt caacccagta      2940
     agagtgctta ttcctcacca gctttccttg ttccgaaggg ggaagatgat tttaggatgg      3000
     tcattgatta ccgtaagctc aaccagagtg tcgacatcga agcagtgccc ttgcctgata      3060
     taaatactgc tttctcatgg ttttccaagg ctaagtattt ttgtgtactt gatctcaact      3120
     ccgcttatca tcaaattcct ctctctgctt cttcaatgcc tgtcactgcc ttttgcaccc      3180
     cttgggggct gtacgaattt actagagttc cgtttggatt ggcaactggt gctcaagttc      3240
     taacccgact gggtaatctt ctctttaatg atcttcgctt taagaactta gtcaatttcc      3300
     tggacgatta tgtgttgtat gccgaaactt ttgaggaact gctttctgtt cttgatgaag      3360
     ttttaaaacg cttcaaggct gcaggtatca ccatcaaccc tcgaaaactt cagattgccg      3420
     tgcaggaaat tgtctattta ggtcacaaga tttcccatcg agggctggaa gttgattcag      3480
     gacggactcg agcgattcga gactacccgc cgcccaggga tgcaaaagga attgctaggt      3540
     ttattggaat gattaatttt tattcgaagt tcatccctcg ttttgctgaa agagcggcgc      3600
     ctcttaattc cttgcgtaga aaaggtgcta aatttgtgtg gggtactgct caacaaagtg      3660
     cttttgacga tttgaaaacc tgtattatcc atcctccagt tcttcgcaca cccgatttca      3720
     ataaggaatt cattctacaa accgatggtt ctagcatcgc cttaggagct gttctgttgc      3780
     aggaagttga cggtgtacgc atgcctatcg catatgcatc taggactctc acagaacaag      3840
     aacgaaagta ctgcgcttat gagattgagt gcttaggtgt cttattcggt tgtgacaaat      3900
     tccgtgtttt tctcgaacat caagagttcc ttcttgaatg tgacaatcag gctctgagct      3960
     ggttgttggc tcaccctaga caactaggta gaattggaag atgggtcatg cgcatcgcat      4020
     ccctcaaatt tcgagttcag cacattcggg gtaccgctaa tatctttgcg gatgctctat      4080
     ctaggatgtt ttatgttgat gatgaggttc cacctgtggt aaacgttgtt aaaccttctt      4140
     ggccgcagtt tcctatggct catggtgata ttggtgacca tcaaatgtcc gatccagaac      4200
     tgaaagcgaa aattcttgtc ttgaaaaatg gtgagttact gcctaagttc tcactaagaa      4260
     agggtgtctt gtgctgtgtt tcmtcgaggg acaaactccc gagaattgtc ttacctactg      4320
     ctttaatccc catggtcttc aattactatc ataagtcacc atttggtgga catctcggtg      4380
     ttttcaagac tctgaataaa attcgggagc atttcattta ttccaacatg aaagctgata      4440
     tccatcagcg agttaggtct tgtcaagagt gtgccttcgc caaaccttct gccaacacca      4500
     aactcggcaa attagtgtca gaaaaaccta ctaggcctct tgagaaaatc tattttgatt      4560
     atatgggacc gatggtccgt agtaagtctg gaaatcgttt cttgttagtt tgcgttgacg      4620
     cttttagcaa atatgtttgg ttttccccta ctcgtaattc tacatctcag actactatta      4680
     aggagttaac ccgtattttt cagtgttttg gatttcccaa atttcttgct tctgataatg      4740
     ctcgtgcgtt tacttgtccc ctatttcgga attttgtttt caactttgga atgactcata      4800
     tcaaaacctc gccttatcat ccacaaggta acttagcgga aagagtcaac cgcaatctca      4860
     agtcggcttt gattgctttt cattcgaaat ctcaaacttc ctgggatcaa aatcttgctt      4920
     ggttgcagat tgcgttcaat gcagcaaaac atgagagtca ccaacattct ccttttgata      4980
     ttatgtttgc ttttcaacct ggtcaccctc tttctttatt gtggtcgatc gatgatattt      5040
     tacctgatag tcttgacaaa gttaccccta attggcgcaa tatccgcgac caactttgca      5100
     aagctaatga acgttctggt atccgttaca acaaaggtcg ctctgattca aattttaagg      5160
     ttgatgattt ggttttggta aaatctttca tgctgagcaa caaagcgaag aaatttatgg      5220
     ctaaattagc acctcgttgg attggtccct atcagatcaa atcgtttgtg tcaccagtgt      5280
     ctgtatcttt gtttgaccct acttcaggaa aatttgtaag gacggctcat gttagtcagc      5340
     tcaaaccttt ctcgtgtaaa taatgttgta aataaaattt gctagcttta ttggtaagaa      5400
     tacttactag tgtgttgcga tcatcattat ttcggtcatt actctgaaag ttgtctaaat      5460
     tttatagtgt ctatgtgtgt gttttttatt gtattttggc cttagtgctt cagatcagat      5520
     cagtcagtta actagtwttt ggtttctaaa ttttggtgtc catttctagt caattttgtg      5580
     gttacttact atccaatgtg gatctcaatg ataactcgtg ttcaatttca attttcagta      5640
     ttatgtgttc ttataacaag tgttttggtg tgttattatg gtgtgatctc acctgatgat      5700
     tggtacagat tctcgcctct ctcttttgtt ttttgtccgt ttcttttgct gctttgtgtt      5760
     gctgattgtt tccggagttt tggtgaaacg ttgtttccgg tcactcttga aaatttttct      5820
     ttataggtcc ttttgcacca tggtgtggtg tgccttgtgc ctttgtgtct ctccacccga      5880
     ttttgtcatt ttttctctcw tgggttgttc gattwggagc gttcctcccc gagaaactag      5940
     atctccwagc tagtttccaa aaattctggt ccktaagtta agttctagcg ttatgttcat      6000
     ttctttcact gttagtgagt ttggggggtc ttttgtagtt agtgttatga gttaagttca      6060
     tgaacttcag taagtttatg aatgtttagt atagtttagt tagtttatga tattttcaga      6120
     gtaagatatc tggggtttag tattatttat tgatttagtt taattctttc tgattgcgtc      6180
     ttagcctggt ggctacctaa atttgtcctt tctcaacttg cttaaggtaa acactacttt      6240
     tcctttctta ccagctattg tcttttggtg tcccattaga agtttccttc tttggggcaa      6300
     gaatgtctga tgacttgatt tcatattttc catcttggtg ttagtgaaag tgtttgttgt      6360
     ttcaccttta ttattttcct tactacgttc gaggtttttc acctctaaat cttttccaac      6420
     ttgtttccct tcgcttttat tcgtaaggtg tatgtctgga gagacttttt cccatgtgtc      6480
     atttggtacc tcttttctta tttttgatgt gctccgcatc tcgttttccc tagggaagag      6540
     tgtaacgagt ttgtcggaag ccttgaatca ttgtgtttga gttgtattwc ctgtgttttt      6600
     tgagtctttt gtttcttggc ctttcgcttt cctcggaaga ttctggcgaa ctggccagag      6660
     actattgtat tttgaatctc ggttgatgtc tgtgtgtaaa ttctgttttg ttgactgtct      6720
     gtagcacctt gtttccctca cgggagtaac tgacaaagtc gctttcatga cgtagagtca      6780
     cgttgatatg tttttgcctt ttcgtctctt tgattatcct tttggatagt gttgtttaag      6840
     ggggggagtc                                                             6850
//
ID   Gypsy-67_TrVa-LTR repbase;    DNA;    INV; 2127 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-67_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2127
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 371-371 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 2127 BP; 423 A; 472 C; 365 G; 867 T; 0 other;
     tgtgccggtt tttcatccta tttttaaaca aaacctgcac gtttttattt ttgtgcgtgt        60
     ggcgggttgc ctaccttgtc cctgggagtc tggtctcgac ggagagagag tcctcggtaa       120
     gtgctgtcct ctgtggccaa cagcggaacc ttctattctc atttccggcg gagtgatatt       180
     ttccgaggga ctctttttcc gccgaaacca agctcccagt ccttgcgatt tgctccaatt       240
     tcgtctgacc ttgcgctcag ctgtgctctc tgcgactgcg cttatcacat ttgttttcgt       300
     ctcctcgggt cgctggcagc tcgtgtgtcc agcgacctgt ggattgaatt ctttttctca       360
     ttattatttt ggcgtttcgt ttgggcaccc gtttttctgt gtcttcgatt tttgatatct       420
     ttattctcaa ccatggctga tctgatccga aagaacacct cgccttgaaa ttttatccat       480
     tcgaatcggc cactgctgaa gtcactgttt tcgctcactc tgtttgatgc aaaccgcatt       540
     ttaattcccc attttgggta agttactttc tttttcctac tttcctttcc aacttttctc       600
     cttttgagtc acgttagcct aaattaatct tttgattgaa agtatgtttg cacattgtat       660
     tttgtttctc tctacttttc aacttaggtt ttggctcatc atcttccatg atgcagcatc       720
     tcctcaactc ttttctgttt tttaactttg aacttgtaac ttaactttga tgagctttat       780
     accgggcacg ttggagccta actcctgaaa cccgactcat gtcttatttc tttctttatt       840
     cactttccaa ctggctcaat gtacctttca tttgcattct ctcatgtagg caattcttgt       900
     aagcttaact tttaccaaac tttctttgtc tcatgtaact ttatgccctt ctggccatgt       960
     gaggcacatg tctctcaagt aatactattc aggccttctg ccatctcatt tctttctgtg      1020
     ctgtaaatcg tgttctctta ttgctttcat tgtaggttta aagctgtgca aaatttccta      1080
     actgtgtttt cttttcaggg ctgatttaat tgtaattttt ccctttcgct gtgtgcgata      1140
     cactgatcat gtactctctc tctttctatt ttactgttgt aactgtaagt ctcttaaaga      1200
     caaagtttct gttatctggc ccctctggca ttgtaattgt gttctcaaca atctctctct      1260
     cttttcactt ggagcagccc accttgaaat tgtggttttt ctctctctgt ctccaatctt      1320
     tatttatctc cctttctata atctttgtaa cgttaagccc ttctggcatt ctcacttacc      1380
     ttgtgtacct ctggtcatga atattgtatt gaattctttt atactatttt tttttggatt      1440
     ttgttccatg cagggttcaa gttcttgtct ccagtttccc gttttggaat ttgctttact      1500
     gtgatcacta tggatacatt atagtctagt ctacttaacg tttctcgggt ccagaccccg      1560
     tttctttctc tcatcgactg caaattttct catctttacg cctggatctc tggttacatc      1620
     gtctactctc cagttttaac tccatcatac tgtgagctag atctttatta tttttgcgtt      1680
     tattatttcc tgcagcgatg agatagagta aagaattcag gcgtctggcc atcgtttaga      1740
     cattttgtct catttatttt ctgccaaacg gagtaaagat atttaaaact atttaaacag      1800
     tgatgtcagt gtattttatt gtgtgtgtgt gtatgtgata tgaatgtgtg tgtgctagtg      1860
     tgagaccatt ttagaattat tatttattta aattggtact accttttctt ctgtgatatt      1920
     taatttgcgc cctcttgtga ttttaactat gcgcctacct tataaatttg tgaatttgtg      1980
     attcgaacct tttgctgtga taacttttga attgatataa atcagccttc tctttaaatt      2040
     ttgtattttg tgactcttga gttaactcct gcccgcttcc aactttccat cctccggggg      2100
     gttttaagta tacccaagag tgtaaca                                          2127
//
ID   Gypsy-680_AA-I repbase;    DNA;    INV; 6603 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-680_;
KW   Gypsy-680_AA-I; Gypsy-680_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6603
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6603
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2053-2053 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6603 BP; 2530 A; 1217 C; 1096 G; 1744 T; 16 other;
     ggcgcagtcg aaaaggccca ctctacgttg aagagaaagt gttatctgga ccaaaagaca        60
     gtgcaactag gaacttgtga aaacgttatt gcgttccatc agtgcttagt gcgtgaagtg       120
     tttttttgga gctcgaccct gtagctgagg acgcccggaa cggaattcat cgagaagacc       180
     acaccacccc tcaacccgta ggcggtttgc gacgttcttt gccagaagca tcattttcaa       240
     cggctggatt catccacttg agagcgggag aatctaaaaa ggttagtgtg aattttaatt       300
     tcttttaaat tattgcatgc ctaaatttca acctcttatc ggggccaaaa acaaaacagt       360
     tgttcgacct tttattaaag tgaaagctcg aaaattcgca aatatggagc aaattaacct       420
     ccaacaattg tacgataata tggttgccct agagcaacga ctaaactctc tccaattgga       480
     aaacaatttc ctgagagatc aaaatgctgc ccctgcagta cgcgaagtgg cgcaaacaga       540
     catatttagg atccctgatc cgattaaaac catccccact tttgatggga ataaaaaaca       600
     attgagtgca tggttgacga cagccgaacg cacattagaa ctcttcagag caagagttac       660
     ccaggatgca tttagcatct acgaacaaac aattataaac aaaatcgaag ggaaagcacg       720
     cgacacaata tgtgttaatg gcaatcctac aaccttcgcc gaggtagctg atgtacttcg       780
     aaccatgtat ggcgatagga atgatatgtc cacatatcaa acgcaattgt ggacacttaa       840
     aatggatgat tctatccatt cgtattataa aaagacaaaa gagattatac aaagtatgaa       900
     atctcttgcg aaggagaaac aaagttaccg agatcattgg gtggctataa atgagtttct       960
     cgatcaagaa tgccttgcgg ccttcatcaa tggtcttaat aagccatatt ttggatacgc      1020
     gcaagcgtct aaaccagctg atttagaaag cgcatacgcg tttctttgta agtttcaaaa      1080
     cgcggagcaa acaaaaaagc atacacaggt tccaaacaca cagaaaacat ttggaaattt      1140
     taaaaataat aacaaaactg aaagagttga aacaaaatac caacccaatt cttctccgaa      1200
     atttacgaaa ccacaatcgg atagacaaaa agtttcccct atggagattg atccctcctt      1260
     acgttcgaac catagaaaca aaataaataa tcatgacacc gtgkaagatt ctaacgatga      1320
     tgaaaatgaa gatactgaag taaacaatga atttgatttt gaggaggaag taaattttca      1380
     ggtttctcaa accgacaacg atgtgaggta aacgcaataa atggattacc atttattaga      1440
     ataatattac acaatggaat caaagcaaag cttttgatag atactggttc aaacaaaaac      1500
     ttcatttcac cagatttgat tcccgactta aagaaaattc catgcaaacc tatactaatc      1560
     tcaaacatca agggtaatca cagagctaat cagaaatata tgatcgatat ttttaatacg      1620
     aagcaaatga ttccatttta tctttttaaa tttcataagt tctttgatgg aattcttggt      1680
     tacgaatcaa tgactgaatt gaaaatatcc atagatttgt tgaataaaaa acttgttctg      1740
     cctaataaaa ctgttgattt tgaaatacga aaatatggac caccggaaga aaccattaac      1800
     gctcagtctg caaaattcat aaaaattcct gtattattgc caaacgatga tgttctagta      1860
     cagaagaatc taaaaattaa tcagataatc attccatctg gagtttacaa agcaaaggac      1920
     ggatatattg aagctttggc aacmmacttt gggaatcgta caacttttaa atggacaaaa      1980
     ccattaaaag tcgtttcatt caaaaatgac tatgaaatat tccatacaca agctacmatt      2040
     ggtaagaaat tggacacaaa ggaagaatta aatcacctaa ttagaacttc tcatttgaac      2100
     tacgaagaaa aatctaaact attcaacatt ctgagcaggc atccaaacat cattcataga      2160
     gaatctgaaa aactcacttg cacagaattt ggaacccata aaataaacac tacagatgaa      2220
     attcctgtac atgcaaaaac atacagatac cctcacattc ataaacctga ggttgataaa      2280
     caaattaacg atatgttggc cgatggcata atacaacaat caatttctcc atggakatcg      2340
     ccaatctggg tagtcccaaa aaaagcagat tctagtggac agaaaaaatg gcgcatagta      2400
     gtggactata ggaaactaaa tgaaaaaacc attgatgaca agtttccaat accaaatata      2460
     gaggatatcc tagacaawct ggggagaagc gcgtatttta ctattttaga tctgaaatca      2520
     ggatttcatc aaataaaagt ggatcctaca gatcgccaga agacagcttt cagtacagac      2580
     aaaggacatt tcgaatttat tagaatgccc tttggtctaa aaaatgcacc tgcaaccttc      2640
     cagcgggtca tgaatacaat tttgaaggaa ttaattggaa aatgctgctt agtatactta      2700
     gatgatataa ttatttttgg aagctcattg cagcaacaca ttgaaaattt agacaaagtc      2760
     cttacaagac ttactgaagc aaacttgaaa atccaactgg acaaatgcga gtttttacaa      2820
     aaacaatgtg aattccttgg tcacatcgtt acacaaactg gtataaaacc aaatccaaac      2880
     aaaatcgaga aaatttcaaa ctggccaata cccaaaacaa ccaaacaaat aaaaggattt      2940
     ctaggtcttt tgggatatta tcgaaaattc attaaggatt tcgccaaatt aacaaaacct      3000
     ctaacgaaat gtttaaaaaa aggagccaag ataatacacg atgatgagtt catacaatgc      3060
     ttcaatgatt gcaagaaaat gsttgtgtca gaccctatat taaggtatcc ttattttgaa      3120
     aatagattta ttttggaaac agatgcaagt gattttgcat taggagcagt cctttcgcaa      3180
     aaatttgaag attcaaagga acacccaatt gcatatgcat cacgcactct gaatgatacg      3240
     gaatgcaatt ggtccgcaac cgaaaaagag cttgctgcga ttgtgtgggc tgtaaaacat      3300
     tttaggccct acatttatgg aacaaaattt cttctgagaa cagatcacaa agctttgtta      3360
     tggctaagac agaaaaaaga tttgaatcgt aaattgttaa atatgaaact tgagttagaa      3420
     gaatacgagt tcgacataac atataaaaaa ggaacattga atagaaatgc agacgctctg      3480
     tctagactag aaacagacca acaaacwtta gttgcaatgc atgagactgg cgatgattct      3540
     atgacacaac gttcggcaga taccgacgat ggtgatttta ttccgagtac ggaaagaccc      3600
     ttgaatgaat ttaaaaatca aattcttctc gaacaatcaa ctgaaaatac cattgaaact      3660
     ttaacaatat ttccacatta tacgagagtt gtaataaaga amccagtttt cagtcctgct      3720
     attctcatca atatactgaa agactacgct agtccaaact gtacaacagg aatattttgc      3780
     aaaaccgaaa ttctgcgaaa cttgcaaata atctacaaaa attatttttc cagagctaaa      3840
     acactcaaam tattctggac agaaaaattg ttaaccgacg ttattgaaga aaatgaacaa      3900
     gatcaaatta ttcaagcgcg gcataactac aatcgtagag gaatagtaga aacttacaaa      3960
     cacattaaaa ccgaattctt ttttccaaaa atgaaatcta aaatcactcg tttcgtaaat      4020
     gtgtgcaagt tatgccaaaa aagtaaatac gagcgacacc cgtataaaat taaattcaaa      4080
     cttactcaaa tgccatcaaa accactagaa attgttcatt tagacatatt tataattcga      4140
     aataaattat atttgacatt ttgcgataaa ttctcaaggt tagcaactgc tatacctatt      4200
     cgaacacgaa atactatcca tatcattcaa gcattcgcca agttcataac aatgcttggt      4260
     aaaccaaata ttcttgtaat ggattcagaa gcctcgttta cttcgtctgc aatgagagaa      4320
     tttttagagg aacatcaaat tgaatatcac ttcaccagtg taggtcaatc gtcatccaat      4380
     ggtatcgtag aaattgttca tcgaaccttg cgagaattac ataatatatt atcaaacaag      4440
     aattccacca aagatctctc tgaatctaca aaaataaatt tagcagtggc aatttataac      4500
     gattcaattc actcacaaac aaatttgaca ccaagagaat tattccatgg aatacgaaat      4560
     aactccactg tcccacagga ccttgacgag agaattagac aaaaagagaa attattcctg      4620
     gaatttaagg aaaagcaatt tgaacgtaaa caaaaggaat tggaaaaact gaaccggaat      4680
     agagaagacc ctgaagaatt cgaggaaaac agaactgttt accaaagaaa acgaaataac      4740
     ttgaaacatg aagaaagata tgcagaaatt aaggttaaag aaaataaaga cgtatgtata      4800
     attgatcaaa actccagaaa aattcataaa tcgaaactga aaaggaaacg taaaattact      4860
     taaaagtgca agcatagtgc atattgaaat aataattaac tgatttggaa caaattcttc      4920
     taaacattga acattatgct ggcacttgat tataaatcga aataccttct aacattatta      4980
     ttttattcca cagatccgga cacaatgcgg tggatcctat tcgtaatcct catactccca      5040
     atcctatcat cctatttttt ctttccagca aacggcaagc acttggaaat tactgatttg      5100
     aaagacaacc ctggtgttgt ggctcttaaa gtaggtaaag cttttgttat acaaggatac      5160
     gactggttag ttcacacaat taaattagat gcattccatg aaattttaca acagtatggc      5220
     ataatgataa atgaaataga aacaaatttt aatgcaaaag acattaggga tcttttaaaa      5280
     ctgaaattta ttcaaacaaa catgacattt cagaaactta gctttcggaa aagatcaaag      5340
     agagccatca atattctagg cacattggta aaaacaataa ctggaaacct ggataataac      5400
     gacctaataa cattaaatca aaacattamc tttttacaaa attcaaataa aaacctcatt      5460
     gagtcaaaca atcaacaaat aaaaataaac aatcaatttg aagacagaat gaataacctg      5520
     acaagagtaa tatttaacga aaacagagaa ataggtaaac tcactaatca gattagggca      5580
     aataacaaca taaaggtctc ctgggaacaa attcaacatt tccagcgatt aatcttcaac      5640
     ttggacgtgg ttcaacggca tttsgatgac atctcggatw cgwttgtcat gkctaaagtg      5700
     ggcgttttat ccaaaagcat ccttgaagca acagaaattg attacattat cggaaaattg      5760
     gaaaaggcag gaatttccac tatcagcgat gagcaagtat acgaattttt ggaaccggca      5820
     gccttctaca acggttcatg cattgtgttt ctcattaaaa ttccaaaatt cctacaagga      5880
     ccctaccaac agattatggt ggaaaatatt cctatcaatg acgaagtaat accgatcgat      5940
     ttcacgcacg cagtcctagg gacgaatgaa acatttgttg taaatgatac ttgcgtaaac      6000
     attgaacaga atattatgtg caagttacac acaatgaaaa atgtctcgga cgatatgtgc      6060
     attcatcgat tactaagagg gaatcccagc agctgtccat tcaaaaaata caacattatt      6120
     cgasaaatca aatcaattgg aagcggaaaa atcctcatta aaaatgcaca tccaactgtg      6180
     caactgaaaa acagttgtgg ttttggccca aaaaacctaa ctggatcact acttatcact      6240
     tttaggaact gttccatcca agtggacaat aaatcatttg aaaacaccca attcgaatac      6300
     agcaacactt tggagattct cccactgcaa tcaaccttga tcaacaagtc aaaaactatt      6360
     acaacagaaa cacaaacctt gcaagaacta cacataaaca acagaaaacg aattgaattt      6420
     ttggaaacaa ccaatagtca tgtttcatac ggaggcactt tcacaatggt catctttcta      6480
     ataatatttc tttacctttt caaagaaata aggacaatct ggacgaaaat tgtaatcaaa      6540
     gcatctacac ctacaacttc caacatcgag ttgaaccggg gcggttcaag ctaggaaggg      6600
     ggg                                                                    6603
//
ID   Gypsy-680_AA-LTR repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-680_;
KW   Gypsy-680_AA-I; Gypsy-680_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-411
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-411
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2095-2095 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 411 BP; 120 A; 88 C; 94 G; 109 T; 0 other;
     agttatgtcc caacctgcca aacatcattg tacaagttct tccacagcat agttcccacg        60
     ccagagttag cgccaggcaa aacaacaaca acggacatcc gatcctgtac gtgacaattg       120
     gatgggagac atcgcgcgcc agcgattccc agctgacctc agcatcacaa acgtgacgat       180
     cgcatgggaa acatctcgcc gtcatcgatg gttcccagct gaccgtaggg ctaggtaggt       240
     tactagttta ctagttaggg aagatcaggc agtgttagtt tagagctagg acagtgaggt       300
     tctctaaaaa gtgtgtttga cttgtaattt aaaaatatta tatgtgaata aaggtgatta       360
     tggaagttag ttcctttttt tttagaaagt gatgaacacc cttccataag t                411
//
ID   Gypsy-681_AA-I repbase;    DNA;    INV; 6594 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-681_;
KW   Gypsy-681_AA-I; Gypsy-681_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6594
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6594
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2172-2172 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           570..1580
FT                 /product="Gypsy-681_AA-I_1p"
FT                 /translation="MLMQTIAELKAKNDDPFLAFRTPDPVKNLPTFGGNKK
FT                 ETSAWLEDAENTLDLFKEYRGKPMYTQIVRAIKNKIIGEAKGILIAAGNPN
FT                 SWDEIKAVIINSYGDRRDLTTHIQSLFYTNQGKKTLLEYYNKIKTIDTAIK
FT                 STAATIDDYKNSTKAINSLVSLMTLTRFIDGLSDELSFHVRSYRPESLEEA
FT                 YEITVQYSNAAYRQKLNKKPTQDRQWHADKRTQSQPQGQTPSSFQNPQTKF
FT                 NSQQSQNLNNKFNGSGRFRNQKNNLDDDVSMRTAKSKIEVNNHNSCATQNE
FT                 CGNSREKEYDTPHQPDDSVLESDDDEYLVDDELNFLVEETLREKS"
FT   CDS           1634..4990
FT                 /product="Gypsy-681_AA-I_2p"
FT                 /translation="MKFLVDTGANKNYISPEHVNIDNCKNETGIRVTNING
FT                 TITINKSVSFDPFQINKKLKFFVFKFHKYFDGLIGYESLRDLNAQIDIRKN
FT                 TLKIGRKTFQMLKRFPDNHQNININEQEFQYISLQTKKDGDFLITDEINYS
FT                 SFTILPGLYRSTNNKAIVAIQNISKCTQEINLNQVKIDNDPFDLMELPTQI
FT                 DPINYNFRDDHMNNEEKEALQEVIKQNKEVLYTESDKLSFTHKIKHKIRTT
FT                 DCIPVHTKSYKYPYAFENEVQEQVRKMLNDGIIKESISPYTSPVWVVPKKT
FT                 DATGRKKFRLVIDYRKLNEKTINDKYPIPEITDILDKLGRATYFTTIDLVS
FT                 GFHQIQMAEEDTEKTAFSVNGGKYEFTRMPFGLKNAPATFQRVMDCVLREL
FT                 IGKCCFVYMDDIIIFSSSLQEHKKHIAQVLQKLREAQLKIQLDKCEFFRKE
FT                 TQFLGHTVSEEGVKPNSDKIEIIRKWPIPKTEKEVRQFLGTLGYYRRFIKD
FT                 FAKLVKPLTALLRKDVEFIITEEIKESFEKCKQILTLDPVLTYPDFNKEFT
FT                 LTTDASDFAIGAVLSQGPVGKDRPIAYASRTLTQTEERYSTTEKEFLAIVW
FT                 AVKHFRPYLYGRKFKLFTDHQPLTFSMTNANHRIIRGKLALEEFDYELIYK
FT                 PGKLNSVADALSRIKVDELNANSQASMDVEPSEHEKDTDQESDEMTVHSAD
FT                 TSDDYYIRHTERPINFFRTQVIFRISGNDINTHEQIFPRYHRHIIAKSEFT
FT                 EEDIVETLKQKLNPRGISCIKIPISLTQLLQETFKKHFSSNKIYKVFISET
FT                 LLQDVRMDNEQDELVRKTHNYGHRGPKENRIQILQQYFFPQLDRKLKIFYE
FT                 SCDICKRAKYDRRPPKLIHKSVFGDNPFDRVHIDRFFLKGQTWLTIVDSFS
FT                 KFANAIPLPSRTIVDIKNAITQHIRHFGRPKTIVGDQEPAFRSIDFIGFLN
FT                 DLGIEMHFASNSNSNGIVERFHSTLIEIYRTNKSKFENINTIEMINIAVDI
FT                 YNNTFHQSTKRQPRSLIFNESKDINMEEISEKFKNLHSAVKVELLKRKTKY
FT                 EEKHENKEKPKPLEAGEKKYVKISQRLTKDKDPFKLITIQNDNDLTFRDTN
FT                 DIKIHKNRIKK"
FT   CDS           5014..6591
FT                 /product="Gypsy-681_AA-I_3p"
FT                 /translation="ISNFRFISIVTATVYQDISNHNGLITINLHKVRIRTG
FT                 YHRIIHKVDLEDVQSNLLYIENVSNLLNLTDHLEDTFLYKLNIAKNKLNSL
FT                 YPKRHKRGLINALGTVIKFVAGNPDNEDLELVQHNLENIESTENRIISNQD
FT                 RQIKINNSLQKTVNKVSITISKIAKRMSTDRETFRKDVEEINLILNLDIII
FT                 KILEDIEEQIIFSKSNILNKNILSPLDKDYIIEFYKKQGIKLHFDDEILEF
FT                 VKCITTLKNDHIVFIIKLPVVESQEYQLIQLEATNINGSRINLETQYVAKF
FT                 KKSMYKQSERCVLCDNTHKLTDECVYNILTNQAAKCNMSKDTNQFILKEII
FT                 PGTILIDTRVRIHVYDSCGDDRIIAAPTIIETENCTVKIHNQSFSQNFQTL
FT                 SNAEFSTPIFGKRIEANKQIVDVEEIHQAHLENLEEIARIRLQLSNSQVIG
FT                 GATIASITIFLSIIVYLHRYRKQCFGKLTNAKAEIIADEVTSLKTISSEGK
FT                 STPSKFIPLPRLTRLEVQEKSNEDARHLRG"
XX
SQ   Sequence 6594 BP; 2580 A; 1317 C; 1146 G; 1551 T; 0 other;
     ggcgcagtct tcggaaaagt gttgtggaag tagtgaagga ctttgagtga aaacagtgaa        60
     accaaagaca tcacgaaatt tccaacttta gcaaacttca gtgtgaagaa ccggatcatc       120
     ggcaacagcc acagttgagg gaatatcatt ctgtttgagt gattcggagc gacggaagga       180
     cccacacgca acaacctaca acccaaggga caaccacaag acgactccgg gatgaaagta       240
     attctcctgt aagtaaaatc tcctttttaa atcataaagt gattgaaaag aactatattc       300
     aaattaccag tgctagtgat acgagtgaag agggcatatc tttcatttcc atccactgca       360
     tttaattatt ctcatacgcg atcagtcgca caataaaccc aagtgaaacg ggaaacatcg       420
     tgtctagtga caaaacaaaa aaaaaaaaaa aaacctacaa tcatgaataa tggttaccaa       480
     aatcaagacg gggaactgcc agacttccac cgccaacact tgaagagcag ctaattgatc       540
     aaattaccca gctcacaaac aatcaaaaca tgctgatgca aacaattgcc gaactgaagg       600
     caaaaaacga cgatccgttc ttagctttta gaacaccgga tcccgtcaaa aatctgccca       660
     catttggtgg caataaaaaa gaaactagtg catggctaga ggatgcagaa aataccctcg       720
     acttattcaa agaatataga ggaaaaccga tgtataccca aatagtcaga gcaataaaaa       780
     acaagattat tggcgaggct aaaggaattc tgatagccgc cggtaacccc aacagttggg       840
     acgaaattaa agccgttata attaattcat acggggatag acgtgatctt acaacgcata       900
     tacaatcctt attttataca aatcagggaa agaaaaccct actagaatat tacaacaaga       960
     ttaaaacaat cgataccgcc atcaaatcaa cggcagcaac gattgatgac tataaaaatt      1020
     caacgaaagc gataaacagt cttgtgagtc ttatgacact caccagattt atagacggtt      1080
     tatcagatga actgtcattc cacgtgagaa gttacagacc agaatcactg gaagaagcat      1140
     acgaaattac agttcaatat tcaaacgccg cttatcggca aaaattaaac aaaaaaccca      1200
     cacaagatcg ccagtggcac gcggataaaa gaacacaatc tcagccacaa ggtcaaacac      1260
     catcaagttt tcagaacccg caaacaaagt ttaactctca gcaatctcaa aatctaaata      1320
     ataaatttaa tggatcagga agatttagaa accagaaaaa taatttagac gacgacgttt      1380
     cgatgcgaac ggccaagtca aaaattgagg tgaataacca caacagctgt gcaacgcaaa      1440
     acgaatgcgg taattcgagg gagaaagaat atgacacccc acatcagccg gacgattcag      1500
     tgctcgagtc agacgatgat gaatacttag tcgacgacga gctaaatttt ctcgtggaag      1560
     agacgctaag ggaaaaatcg tgaaaagtaa caattttata ccttatattt caataaaaac      1620
     atcaaaagga gaaatgaaat tcttggtcga cactggtgcg aacaaaaatt acatttcccc      1680
     cgaacatgtg aatatcgata actgtaaaaa cgaaactgga atccgagtaa cgaatataaa      1740
     cggaaccata accattaaca aatctgtatc ttttgaccct tttcaaatta acaaaaaact      1800
     aaaatttttc gtttttaaat tccacaaata ttttgacggg ttgatcggct acgagtcgct      1860
     tagagacctc aatgctcaga tcgacataag aaaaaacact ttgaaaatcg gtagaaaaac      1920
     cttccagatg ctcaaacgtt tcccagataa tcatcagaat atcaatataa acgaacaaga      1980
     attccagtac atttcgcttc aaacaaaaaa agacggtgat tttttgataa cagatgaaat      2040
     aaattatagc tcatttacaa ttttacccgg tctatacaga agcaccaata acaaagcgat      2100
     tgtggcaatc caaaatattt caaaatgcac tcaggagatt aatttgaatc aagtcaaaat      2160
     agataacgat ccattcgatt tgatggaatt gccaacgcaa attgacccga ttaactataa      2220
     ttttcgcgat gaccacatga ataatgaaga aaaagaagca ctacaagagg ttattaagca      2280
     aaacaaagaa gttctttaca cggaatccga taaactttca tttacacaca aaatcaagca      2340
     caaaattcgc actacagatt gtattccagt acacacgaaa tcttataagt atccttacgc      2400
     gttcgaaaac gaagttcagg aacaagtaag aaaaatgtta aatgacggga ttattaaaga      2460
     atcaatctca ccatacacgt cacctgtatg ggtagtcccg aaaaaaaccg atgcaaccgg      2520
     tcgaaaaaag tttcgtctag tcatagacta caggaaacta aatgaaaaaa caataaatga      2580
     caagtaccca ataccagaga taacagacat tttagataaa ctaggtagag ctacctattt      2640
     tactaccatt gacttagtgt ccggcttcca ccaaattcaa atggcggaag aagacacaga      2700
     aaaaacagca ttctcggtga acggagggaa atatgagttc actcgtatgc cattcgggtt      2760
     gaaaaacgcc ccggcaacct tccagagagt tatggactgt gtattaagag aactaatagg      2820
     aaaatgttgc ttcgtctaca tggacgatat aatcatattt tccagctctc tccaagaaca      2880
     caagaaacac atcgcccaag ttttacaaaa attgagagag gcccaattaa aaatccaact      2940
     tgataaatgt gagttcttca gaaaagaaac tcaattccta gggcacactg tttctgaaga      3000
     gggtgtgaaa ccaaacagtg acaaaataga aatcattaga aaatggccaa tacctaaaac      3060
     agaaaaggaa gttagacaat ttttaggaac attaggttat tataggcgat ttataaagga      3120
     tttcgctaaa ttagtaaaac cacttacagc actactcaga aaagatgttg aattcatcat      3180
     tacagaggaa atcaaagaaa gctttgaaaa atgcaaacaa attttgactt tagaccctgt      3240
     gttaacatac ccagatttta acaaagagtt tacactaacg acagatgcaa gcgactttgc      3300
     aataggcgct gtactttcgc aagggccagt aggtaaagat agacctatag cttacgcatc      3360
     aagaacttta acccaaacag aagaaagata ctctacaact gaaaaagaat ttctcgcaat      3420
     tgtttgggca gttaaacatt tcagaccgta tttgtacgga cgcaaattca aattgttcac      3480
     ggatcaccag cctctgacat tttccatgac taacgcaaac catagaatca taagaggtaa      3540
     actcgcgttg gaagaattcg actacgagct aatatataaa ccaggaaaac taaattcggt      3600
     agctgatgct ctgtctcgaa ttaaagtcga tgaattgaat gcgaactcgc aagcatcgat      3660
     ggacgttgaa ccttcggaac atgaaaaaga caccgatcaa gaaagcgacg aaatgacggt      3720
     gcactccgca gacactagtg acgattatta catacgtcac actgagagac ctataaactt      3780
     tttcagaacc caagtgattt tcagaataag tggtaacgat atcaacacgc acgaacaaat      3840
     cttccccaga tatcatagac acataatcgc caaaagcgaa tttacagaag aagatatagt      3900
     cgaaaccctt aagcaaaaac tcaaccctag aggaataagc tgcattaaaa ttcctatatc      3960
     tctaactcaa ttactccaag aaacatttaa aaagcatttc tcatccaaca aaatttataa      4020
     agtattcatt tcagaaacct tactacagga cgtgagaatg gacaacgagc aggacgagct      4080
     cgtaaggaaa acacacaact atgggcacag aggacccaag gaaaacagaa tacaaatctt      4140
     acaacaatat ttcttcccac agctcgaccg aaagcttaaa atattctatg aatcttgcga      4200
     tatctgtaaa agagccaaat atgacagaag gccaccaaaa ttaattcata aaagcgtatt      4260
     tggagataac cctttcgatc gagtacacat tgacagattt tttctcaaag ggcagacgtg      4320
     gcttactata gttgattctt tctcaaaatt tgcaaacgcg atcccattgc catccagaac      4380
     aatagtcgac ataaaaaacg ctattacaca gcacatacga cattttggca gaccaaagac      4440
     tatagtaggt gaccaagagc cagctttcag gtcaatcgat tttatcgggt ttttgaacga      4500
     cctaggcata gaaatgcatt tcgctagtaa ttctaactct aacggaatag tggagcggtt      4560
     ccactcaaca ctcatcgaaa tttatagaac gaacaagtcg aagttcgaaa atattaatac      4620
     aatagagatg atcaacatcg cggttgacat ttataataat acatttcatc aatcgacgaa      4680
     acggcaacct cgtagtttaa tttttaatga atcaaaagac ataaatatgg aagaaatttc      4740
     ggaaaaattc aaaaatctgc attcagcagt aaaagtagaa cttcttaaaa ggaaaactaa      4800
     atacgaagaa aagcacgaaa ataaagaaaa acctaaaccc ctcgaagccg gtgagaagaa      4860
     atacgttaaa atatctcaaa gattaaccaa agataaagac ccattcaaac tcataacaat      4920
     ccaaaatgat aacgatttaa catttcgcga cacaaacgac attaaaattc ataaaaaccg      4980
     aataaaaaag taataaaata atcaaatcga taaatctcta atttcagatt catatcaatc      5040
     gtcactgcaa cagtttacca ggacattagc aaccacaatg gattaataac catcaaccta      5100
     cataaagtaa gaattagaac aggataccat agaatcattc ataaagtgga tctcgaggat      5160
     gtacagtcaa acttgttata cattgaaaat gtcagtaatc tattaaatct tacagaccac      5220
     ctagaagata catttctata taaactcaat attgcaaaaa acaagctgaa cagcctatat      5280
     ccaaaacgtc ataagagagg attaataaac gcgctaggaa ccgtaataaa atttgtcgca      5340
     gggaatccgg ataatgaaga ccttgaactt gtacaacata atttggaaaa tatcgaatca      5400
     accgagaacc gcattataag caaccaggat agacagatta aaatcaacaa ctctttacaa      5460
     aaaacagtta ataaagtatc aatcacaata tctaagattg ccaaacgaat gagtacagat      5520
     agggaaactt tcaggaaaga cgtagaagag attaacttga ttctaaattt ggatataatc      5580
     attaaaatcc ttgaagacat agaagaacaa ataatttttt caaaatcaaa catccttaac      5640
     aaaaacattt tgtccccctt agacaaagat tatatcattg aattttacaa aaagcaaggg      5700
     attaaacttc attttgacga cgaaatcttg gaatttgtta aatgtattac aacactaaaa      5760
     aacgatcata ttgtttttat aataaaacta ccagttgtag aaagtcagga atatcagctc      5820
     attcaactag aggcaaccaa tatcaacggg agcagaatca acttggagac ccagtatgtg      5880
     gccaaattca aaaagtccat gtacaagcag agcgagagat gcgtgttatg cgacaacacc      5940
     cacaaattaa ccgatgagtg tgtctacaac atattaacca accaagcagc aaagtgcaac      6000
     atgtccaaag atacaaacca attcattctc aaagagatca tcccaggtac cattcttatt      6060
     gacacccgag tgaggataca cgtttacgac tcttgtggag atgaccgtat tatagcagcc      6120
     cctacaatca ttgaaacgga aaattgcacg gtaaaaatac acaaccaatc gttttcgcaa      6180
     aacttccaaa ctttatcgaa tgccgagttt tccacaccaa tttttgggaa acgtatcgaa      6240
     gcaaacaagc agatcgtgga tgtggaagaa atccatcagg cacacttgga gaacttggaa      6300
     gaaatcgcaa ggattcgatt gcagctatcc aattcacagg tgatcggagg agccactatt      6360
     gcctccataa ccatttttct ttcgatcata gtctatcttc acagatacag gaagcagtgc      6420
     tttggtaaac taacaaacgc caaggcagaa atcattgcag acgaggtaac cagcctgaag      6480
     acgatatcat cagagggaaa atcaacacct tcaaagttca tccctctccc aaggcttacg      6540
     aggttagaag tccaggagaa gtcgaacgag gacgcccgac acttaagggg ggag            6594
//
ID   Gypsy-681_AA-LTR repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   26-DEC-2018 (Rel. 26.04, Created)
DT   26-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-681_;
KW   Gypsy-681_AA-I; Gypsy-681_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-375
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-375
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2096-2096 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 375 BP; 116 A; 85 C; 87 G; 87 T; 0 other;
     acgttaggag gaagccagcc ccagaacccc agcaccaaca cagatagaaa caccagggtg        60
     gcaacatcga cgtagcaaca acaaagtagg gcgccatgcc acattggacg aacgagcatg       120
     cgctatgagg acttgcactt tggcaacgca taaactgatg acacgcatta atcgattcga       180
     ccgatcaccc gatcgacgac ggacccacgc aggagcagcc accaggcgga taggtttgct       240
     gagttgacat aatgagttta taaaagccag tttcagtgtc tagaataagt cagtcttagt       300
     cgtgagttgt aacttagtgt ttaattaaat aaaattgttt ttttttatcg aatgctagac       360
     ggcattctac ttatt                                                        375
//
ID   Gypsy-682_AA-I repbase;    DNA;    INV; 6758 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-682_;
KW   Gypsy-682_AA-I; Gypsy-682_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6758
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6758
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2154-2154 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..1782
FT                 /product="Gypsy-682_AA-I_1p"
FT                 /translation="MPKTASGKALQRARKQLNIAFKTVGVSESEESSFSDD
FT                 SGDLAHIPLKDGTNIPQISNLFISESAEMEQALSQMMEQLRQINDNIAAIT
FT                 YRQETQEQEMQSLRNPHQGAEQQATQVPNRRVEDFFRIPDPIKSLPHFEGN
FT                 RKQLHAWLSTAEETLDYFKGEVSPQLFKMYMTAVTNKIEGRAKDILCLAGN
FT                 PQDFDSVKSILINALGDRQELSTYKCQLWQHKMTEGMSIHKYYQKSKELIQ
FT                 NIKTLAKQNATYKANWGAINLFIDEDGLAAFISGLKGTYFGHVQAARPKDI
FT                 EDAYAFLCKFKSQEIAANTTFDKPNKPPFKNENSSKGEQRKFSKPNFQQQQ
FT                 QQQGEKTYQPKPTDMEVDPSLRSRLTLNRKIINNTEIESSDHEYSEDDEDE
FT                 VVEGNVNFCMTTANQTIG"
FT   CDS           1737..5285
FT                 /product="Gypsy-682_AA-I_2p"
FT                 /translation="RECKFLHDDCKSNHRMKNFFDFLPYILVTDKINGNKI
FT                 RLLIDTGANKNIIRAGIIPTKNTKGTTTVKNIFGTQTISKKGKFNLLGPNI
FT                 PEQTYHELKFHDFFDGIIGSEFMSKTKTFIDFDANKISINQVDIPFKKYYP
FT                 SKKYHCYTVTVETDRDGDWYVPSFQKLSKGNLIQPGVYSSFNNKSTIKIIS
FT                 TGKKAPEIPKLKLRVNNFETLIPIPSDSSDTPDRETIEQLIRTEHLSTYEK
FT                 EKLIDTILKNHKVLLRSNEKLTTTTIIKHKIETKDDNPVYTKTYRYPHHFR
FT                 KDVETQIKEMLDSGIITPSTSPYSSPIWVVPKKKDASGKQKIRVVIDYRKI
FT                 NEKTVNDKFPMPEIEDILDNLGKSQYFTTLDLKSGFHQIEMDPKDRAKTAF
FT                 STTQGHFEFTRMPFGLKNAPATFQRAMNNILSNFIGNICYVYLDDIIIIGH
FT                 SLENHLENVCKVLERLTQFNLKIQLDKCEFLRRETEFLGHIVTPDGIRPNP
FT                 DKIQKIIDWKIPTNEKEIRQFLGLSGYYRRFIKDYSKISKPMTKYLKKDTP
FT                 VNTKDPEYISSFTKLKETIASDQILAYPDFNLPFILTTDASDLAVGAVLSQ
FT                 IQDKIERPIAFSSRTLNKAETNYSTIEKEALAIIWAIRKYKPYLLGNQFKL
FT                 YTDHKPLTFIKTSTKNNRILNWRLELENYQYTVEYKQGKTNVVADALSRKT
FT                 DNPTEINANIEEGNSETTETDISDDEEIGQHNENTDDTSDDLETVHSADTS
FT                 DDYFIKSTERPINYYKNQIIFRISRLNIEATESPFTNYRRSTISMDHFDEN
FT                 SITEFLKKYHNGKQTAILAPENLINLIQQSYKNHFSSSGYFVITHFQVEDV
FT                 SNEDRQNLLITKEHERAHRGITEVENQLKRAYFFPRMHNKIAIAINTCSVC
FT                 NTHKYERKPYNIKISPRPATRKPMERVHMDIFSINSYSFLSMVDSFSKFTQ
FT                 MIPIETKNLVDVRNALTRFFSNYGIPLQIVTDHETTFRSIQLKNFLNNLGT
FT                 SLTYASSSESNGQVEKTHSTIIEIYNTNKHKFPEMDTPEIISICISLYNSS
FT                 IHSSTKFTPNEILFNQGSQIDPQQISREAEAIFSKVNRNIEKSREKQKKGN
FT                 HSKEDPPILQEGQNVFVKPNIRKKLDPRAVCTTANQVQERTFKNSRNIKRH
FT                 KNKIKRPKKIKKKSIIFYCSFCLL"
FT   CDS           5246..6757
FT                 /product="Gypsy-682_AA-I_3p"
FT                 /note="env."
FT                 /translation="KKKYNFLLFVLSFIKIFGQNLEISDLHKNPILILKEQ
FT                 NCYIQTGTIKIIHPINLTIIEQNVASFLDISRKIDRSLPLSNLISRKSRQL
FT                 ADNLYKLKPIKNSRPKRWDIVGKGWKWLAGNPDADDLRIINKTFNDVIDQS
FT                 NEQIKINEVINERISKITDTINQLTSVNNVLLKETDALTLLLSLDTMNNIL
FT                 EEIEDTILRARLSLSNSKLLTIKEIFIIEAIINEQGITTNFPEEALSYANP
FT                 KITSKSDMLLYILEVPKTDSTCEVLKIVPLIVNNTIISETPNHVVKSGSKF
FT                 YITEHPEKAIQQLHNTKPFVDKCIIPIIMGLESHCSASITNQTDFEMLPGN
FT                 KLLLNNVKNQYIGSNCGPHNRTLTGNFLIHFHNCTVQIRNNTFTSEERLSQ
FT                 TSQVAGIFPGLSINKHIIDKLNLSSLHWATSKNRHRIDHIQLEQFEFRKWS
FT                 YGLFGGISTTTLIIITIAILCFRRKKVVFTIKYPRKNYKKQKGDKSSKSTE
FT                 DVRSYPPE"
XX
SQ   Sequence 6758 BP; 2594 A; 1379 C; 1088 G; 1697 T; 0 other;
     ggcgctgtag cagttcggta aagttaaaaa gacttgtgta tacaacagtg gaatagtagt        60
     gcaacaaaca actctactca agtggttccc gcatacgcgt ctgcagctga aggattacat       120
     ccgctgattt gatttgagga tccccccggc acaacgtcaa ctttaactga accaggacac       180
     ccgtgagtaa atttttatct ttttgcttac tgacaagttt ggaaaagtga ttatttgctc       240
     aaaatcgttt cgacactacg agatagatcg gacgatttgt atagaaactt ttgattcggc       300
     actacgagat agatcgatca cttgtattgt agctctaaca agccaccgaa acacggtaag       360
     tgaaagcaac attaattcta tacaacaccg taagaacgac gcgctccaag tagacgtcat       420
     tcttactcat attcccccct tacaatcaaa ccagctggtg cgcatcaggt ttcgtaagca       480
     taaagcaacg tttgcagcta cgtttgccaa gtacagttga acatttgatt cgtttcaatt       540
     aattcaatgc caaaaactgc cagtggcaag gcattgcaac gagctcggaa acagttgaat       600
     attgcattca aaactgttgg agtttcggaa tccgaagaaa gttcattttc tgacgattca       660
     ggtgatctcg cacacatccc gttaaaagac ggaactaata ttccgcaaat ctcgaatctt       720
     ttcatttccg aatctgcaga aatggaacag gccttaagcc aaatgatgga gcaattacgc       780
     caaatcaacg acaatattgc tgcaataact taccggcaag aaacacaaga acaagaaatg       840
     caatctctaa ggaatccaca tcagggagcc gaacaacagg cgacacaagt accaaatcgt       900
     agggttgaag atttcttcag gatacccgac cctattaaat cccttccaca ttttgaaggt       960
     aatagaaaac agcttcatgc atggctttcc acagccgaag aaacattaga ctactttaaa      1020
     ggagaggtta gtcctcaatt atttaaaatg tatatgactg cggtaactaa caaaattgaa      1080
     ggtagagcta aggatattct atgcttagct ggaaatccgc aagacttcga ttctgttaaa      1140
     agtattttaa tcaatgcttt aggagatcga caagaattat caacttataa atgccaacta      1200
     tggcaacata agatgacgga aggcatgagt atccacaagt attatcagaa atctaaagag      1260
     ttgatacaaa acataaaaac attggctaaa caaaatgcca cctataaagc taattggggc      1320
     gcaattaatc ttttcattga cgaagatggt ctcgctgcat ttatatctgg cttgaaaggg      1380
     acttactttg gacacgtcca agcagcacgt ccgaaggata ttgaggatgc ctatgcattc      1440
     ctttgtaaat ttaaatctca agaaattgct gcaaatacaa catttgacaa accaaacaaa      1500
     cctcctttta aaaatgaaaa ttcatcaaaa ggcgagcaac gaaaattttc taaaccaaat      1560
     tttcaacaac aacagcaaca acaaggcgaa aaaacatatc aacccaagcc aactgatatg      1620
     gaggtagacc cctctctaag gagcagactg accttgaata gaaaaattat taacaataca      1680
     gaaatagaat cgtcggacca tgagtattca gaagacgacg aagatgaagt tgttgaaggg      1740
     aatgtaaatt tttgcatgac gactgcaaat caaaccatag gatgaagaat tttttcgatt      1800
     tcttaccata cattttagtg acagataaaa ttaatggcaa caaaattcga ttacttatag      1860
     acaccggagc caacaaaaac attatcagag ccggaattat tcccacaaag aatacaaaag      1920
     gtacaaccac ggtgaaaaac atattcggaa cacaaaccat tagtaaaaaa gggaaattta      1980
     atttgttagg tccaaacata ccggaacaaa catatcacga gcttaaattt cacgactttt      2040
     ttgatggtat tataggctca gaatttatgt ccaaaaccaa aacttttatt gatttcgacg      2100
     caaataaaat ttcaataaac caagtagata tccccttcaa gaaatactat ccatcaaaga      2160
     aataccactg ttacacagtg actgtagaaa ccgacagaga cggtgactgg tatgttccat      2220
     ccttccaaaa attatcaaaa ggaaatttaa tacaacctgg ggtttattca tcatttaata      2280
     acaaaagcac catcaaaatt atttctaccg gcaaaaaggc acctgagata cctaaattaa      2340
     aattgagagt caataatttt gaaacattga ttccaattcc atcagattca agtgatacac      2400
     ctgatagaga aactatagaa caactaataa gaaccgaaca tttgtcaacg tatgaaaaag      2460
     aaaagcttat tgatacaatt ctaaaaaacc ataaagtctt gttgagaagc aatgaaaaac      2520
     tcacaactac gacaataatc aagcacaaaa ttgaaacgaa agacgataac ccggtgtaca      2580
     caaagacata taggtatcca catcacttca gaaaagatgt tgaaacacaa attaaggaaa      2640
     tgcttgatag tggaataatt actccatcta ctagccctta ttcatcacca atctgggttg      2700
     tacccaagaa aaaggacgct tcaggcaaac aaaaaattag agttgtcatc gattaccgaa      2760
     aaattaatga aaaaacggta aatgacaagt ttccgatgcc agaaattgaa gatattctcg      2820
     acaatttagg aaaatctcaa tactttacaa ctttagattt gaaatctgga ttccatcaga      2880
     tcgagatgga tcccaaggat cgagctaaaa cagcattctc caccacccaa ggacactttg      2940
     aattcaccag aatgcccttt ggtcttaaaa acgctccagc cacctttcaa agagctatga      3000
     acaatatcct atcaaatttt atcggaaata tttgctacgt ttatttggat gatattatta      3060
     tcatcggcca cagtttggaa aaccatttag aaaacgtttg taaagttttg gaacgtctga      3120
     cacaattcaa cctcaaaatt caattggaca aatgcgagtt tttacggagg gaaactgaat      3180
     ttcttggaca cattgttacg ccagatggaa ttagaccaaa cccagataaa attcaaaaaa      3240
     taatcgactg gaaaatacca accaacgaaa aagaaattag gcaattcctc ggattatctg      3300
     gttactatcg acggtttatt aaagactact ccaaaatttc gaaaccaatg actaaatact      3360
     taaaaaagga cacacctgtc aacacaaaag atccagaata catttcatca ttcacaaaat      3420
     taaaagagac tattgcctcc gaccaaattc tagcataccc cgattttaac ctgcctttca      3480
     ttttaactac ggacgctagc gaccttgcag tgggagctgt gctttctcaa atacaggaca      3540
     aaatagaaag acctattgca ttttctagta ggacattaaa taaagcggag acaaactact      3600
     caaccatcga gaaagaagct ctagctatta tatgggccat aagaaaatat aaaccatact      3660
     tgcttggaaa tcaatttaaa ttatacaccg atcacaagcc actcactttc ataaaaacct      3720
     caacaaaaaa taatagaata cttaattgga gactcgaact cgaaaattat caatatacgg      3780
     ttgaatataa acaaggaaag acaaatgttg tggcagatgc ccttagtcga aaaactgaca      3840
     accctactga aatcaatgca aatatagaag aaggaaattc tgaaacgaca gaaaccgata      3900
     tatctgacga cgaagaaatt ggacaacata acgaaaatac tgacgacact tccgacgact      3960
     tggaaactgt tcactccgct gatacttccg acgactactt cataaagtca accgagagac      4020
     caataaatta ttataaaaat caaatcatat ttcggatatc aagactaaac attgaagcaa      4080
     cagaatcacc tttcacgaat tatagacgat ccactatcag catggaccac tttgacgaga      4140
     attcaataac agaatttcta aaaaaatacc acaatgggaa acaaacggct attcttgctc      4200
     cagaaaattt aattaatctt attcaacaat cctacaaaaa tcatttcagc agctctggtt      4260
     atttcgttat tacccatttt caagtagaag acgttagcaa tgaggatagg caaaacctac      4320
     tcatcacaaa ggaacacgag cgagcgcacc gaggtattac agaagtggaa aatcaactga      4380
     aacgagccta tttcttccca agaatgcata acaaaatcgc aatcgcaatc aacacctgtt      4440
     cagtatgtaa cactcacaaa tacgaacgta agccgtataa catcaaaatt tcaccaaggc      4500
     cagctacaag gaaacccatg gagagagtgc acatggatat tttttctatt aactcctata      4560
     gttttctatc tatggttgat tctttttcaa aattcactca aatgatcccc atcgaaacta      4620
     aaaatttagt agacgtgcgt aacgcattaa ctagattttt cagtaactat ggcataccat      4680
     tacaaattgt cacagatcac gaaactacct ttagatctat tcaactcaaa aactttctga      4740
     ataatttagg aacttcactt acttacgcct cttcgtccga aagcaacggg caagtagaaa      4800
     aaacacactc aaccataata gaaatatata atactaacaa acataaattt cctgaaatgg      4860
     acaccccaga aataatttca atttgcatat ctttatataa ttccagcata cattcatcaa      4920
     ccaaattcac accgaacgaa attctattca accaaggcag ccaaatagac ccacaacaaa      4980
     tatcaaggga agccgaagct attttttcca aggttaaccg caatatcgaa aaatcccgtg      5040
     agaagcaaaa gaaaggtaac catagtaaag aagatccccc tattctacag gaaggccaaa      5100
     atgtttttgt aaagccaaac attagaaaaa agttagatcc acgagcagtg tgtacaacag      5160
     ccaatcaagt ccaggaaaga acatttaaaa attctaggaa catcaaaagg cataagaata      5220
     agataaaaag gccgaagaaa attaaaaaaa aaagtataat tttttattgt tcgttttgtc      5280
     ttttataaaa atatttggtc aaaatttaga aatttctgac ttgcataaaa atccgatact      5340
     aattttaaaa gaacaaaatt gttacattca aacaggaacc ataaaaatca tacaccccat      5400
     taaccttacc ataatagaac agaatgtagc ttcattttta gacatttcaa gaaaaattga      5460
     caggagctta cctttatcta accttattag taggaaaagt aggcagctag cagacaactt      5520
     atataaattg aaaccaatca agaatagcag accaaaacgc tgggacatcg taggaaaagg      5580
     ctggaaatgg cttgcaggaa accccgacgc agacgaccta aggattatca acaaaacctt      5640
     caacgatgta attgaccagt ctaacgaaca aatcaaaatt aatgaagtta tcaacgaaag      5700
     gatttccaag ataacagaca ccatcaacca actcacttca gtaaacaacg ttttattaaa      5760
     ggagaccgat gccctcacac tattactctc cttggataca atgaacaaca tcctcgagga      5820
     aatcgaagac accatcctga gagctcgttt atccctctct aacagtaagt tattaacaat      5880
     caaagaaatt ttcataattg aagctataat caacgaacaa ggaattacga ccaattttcc      5940
     ggaggaagca ttgagttacg caaatccaaa aattacaagc aaaagcgaca tgcttctata      6000
     cattttggaa gtacctaaaa ccgacagcac atgcgaagta ctcaaaattg taccgttaat      6060
     cgttaacaat acgatcatat ctgaaacacc aaatcacgtt gtgaaatcag gaagtaaatt      6120
     ttatataaca gaacacccag agaaagcaat acagcaacta cacaacacaa aacctttcgt      6180
     agacaaatgc ataattccga ttattatggg actagaaagt cactgttctg catctattac      6240
     gaatcaaaca gattttgaga tgttaccagg caacaaacta cttttgaata acgtcaaaaa      6300
     tcagtacatc ggatcaaact gcggcccaca caacagaaca ctaacaggaa atttcttaat      6360
     tcatttccac aattgtacgg ttcaaataag gaacaatacc ttcacatcag aggaaagact      6420
     tagccaaaca agtcaagtag caggtatatt ccctggctta tcaatcaaca aacacatcat      6480
     cgataagctc aatctatcaa gcctacattg ggcgacatca aagaaccgac atcggattga      6540
     tcatattcaa ctggaacaat ttgaattcag gaaatggtct tatggactct tcggtggtat      6600
     ctcaactacc acgttaatta tcataacaat tgcaattctc tgtttccgta ggaaaaaagt      6660
     cgtattcacc atcaagtacc ctaggaaaaa ttataagaag cagaaaggag acaaatcttc      6720
     gaaatcgacc gaggacgttc gatcttaccc cccggagg                              6758
//
ID   Gypsy-682_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-682_;
KW   Gypsy-682_AA-I; Gypsy-682_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-273
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-273
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2097-2097 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 273 BP; 91 A; 59 C; 55 G; 68 T; 0 other;
     aattacgtga caggctaggc cagacaccac cagtagaacc aacaggtcat caataattga        60
     accacgccac ccgagcaaag tccaacgcca tcagcaaacc cgacgaattg tcccatcagc       120
     agatttgagg tacaaaagcc cgatcgaaca atcgatcggc ctcttttagt agtgatcagt       180
     gataggtatt agtcgtttaa gcaagtgtaa ttagtgtgta agaagaaaat aaatgttttt       240
     ttttatgtta acctgagagg acatctcatt att                                    273
//
ID   Gypsy-683_AA-I repbase;    DNA;    INV; 6659 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-683_;
KW   Gypsy-683_AA-I; Gypsy-683_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6659
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6659
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2155-2155 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           525..1670
FT                 /product="Gypsy-683_AA-I_1p"
FT                 /translation="MSESNAANGNSLNAEPAEMLITPDQLLAQVAQLTNNQ
FT                 NSLIATINALQKKAKNPFLNFQIPDQIKIIPEFNGNKKETLAWVQDTQEAL
FT                 ELFEDFELDPSYKQIMRFVKSKIVGEARQVLIAAGNPSEWDEIKDVLLNAF
FT                 GDKRDITSHIQSLFYVKQGKSSLDEYFQKVKSIDTAIKSTAAQMDEYKGST
FT                 DAVNKLISLMTQTRYIDGLNGDTLAMYVRSYRPKTLEEAYEVTIQHSNASF
FT                 RQRMETRQLSENYKGHNIKNGNFASNYQQPANTVGPNSNPKYQYNKSGTPS
FT                 NNFQQPGYHKQNSGKFKIKPATDEDASMRTHVSKMQMNSHTQQRKEFEANQ
FT                 EDETTNETMEDSLLDSDDDECFNSDEINFHLVQRGKPEK"
FT   CDS           1610..5059
FT                 /product="Gypsy-683_AA-I_2p"
FT                 /translation="RMFQFGRDKFSSCSKRKTRKMIETSNFLPYISIMTTK
FT                 GELKFLVDTGANKNYISPAHVNIENCKNEPTSTITNLSGKHTINKSASIDI
FT                 FGIKKKLKFFIFKFHKLFDGLVGYETLRDLRAVLNTANNTLKIGRKIIKMK
FT                 KMIPDEHKINLTEHEFQMVKIPVKEKGSFIIEKEINMQHFTILPGLYEAKK
FT                 GKAIMAIRRDNYERPLEINVNELEYGKDYYEIEKIPLKNKTKIYNIRNDHL
FT                 NEKENSALEEVINKNKEVLFCEDDKLTFTHKIKHKIRTTDNIPIHTKSYKY
FT                 PKVFEEIVRKQVDKLLEDGIVRESISPYTSPVWVVPKKPDASGQKKFRLVI
FT                 DYRKLNEKTISDRYPIPEITEILDKLGRTCYFSTIDLVSGFHQIQLDDEDI
FT                 EKTAFSINSGKYEFTRMPFGLKNAPATFQRVMDCVLREEIGICCLVYMDDI
FT                 IIFSPSLEQHKIDLNRVLNKLKAANLKIQLDKCEFFRKEVQFLGHTVSEDG
FT                 VRPNQDKIETIKQWPLPKTEKEVRQFLGILGYYRRFIKDFARLVKPLTSLL
FT                 RKDQEFVMTKEIETCFNKCKEVLMRDPVLIYPDFSKEFILTTDASDFAIGA
FT                 VLSQGPIGKDQPVAFASRTLNRTEENYSTTEKEFLAMYWAVKHFEHYLWGR
FT                 RFKLITDHQPLTYTLTNTNKRIFRGKLELEGYDYELIYKPGINNVVADALS
FT                 RIKPGEVNANVQVEINNNESESDGATVHSADSSDDYYIWCTEKPINAFKTQ
FT                 LILKICRIESEVSEAIFPNRRRITILRPLYTEIDIVNIFKRYLNPRGTNCL
FT                 RVPIELRQLVQETYKKHFEANRTYKIFISEILLEDVRVEKEQDDLVKATHE
FT                 YAHRGIKENKAQILTRYYFPQLDRKVRTLVESCETCKKSKYDRKPPQLIRK
FT                 SIQGEKPFERVHIDVFFMKGLKWMTIVDSFSKFANIIPLETRTIVDMKRAV
FT                 SEHIRIFGRPQTIICDQEPSFTSIDFQGFLNDLGITLHHASNSQSNGIVER
FT                 FHSTIIELYRTLTPKFPRKPIVEMLNLLTDIYNNTIHTATKRKPREIIFNY
FT                 SNSPNVQELQDAADNLQSAVKVQLAKNRQKYIDKNKDKRQPHDVRPNDKIW
FT                 VKNTQRLTKDKDPYKSVEVKSNNELTFEDTNNVKIHKNRIKK"
FT   CDS           5063..6658
FT                 /product="Gypsy-683_AA-I_3p"
FT                 /translation="LKRFLFSLIHSFLLINNSLATIYRDVNNENGLIAFKI
FT                 DTVRIKLGYERIVKKISLESIEINLNHIEKIALSFKTRDHLHETLLSKIDK
FT                 AREKLKGLQPHRQRRGLINALGTVVKYIAGNPDHEDLQIIHQSLGTLENHE
FT                 NKLTINQRKQIKINTDFQNRINNITDTIRKISSQISLINNTLREDTTLEQI
FT                 NLIFSTDLLIHALEDLEEQVEFSKQDLLNKNILSFEDKRYIFNRLVEQNLV
FT                 LTTIDEIFQYSAGSLTISKNHIVILVKIPILEVNPYDLLRIQPVSINQTTI
FT                 DTDIQLVAKRQNRVIPQQKICKICEETMPLEDECIYRILTHQKPKCVMKKT
FT                 ERKTWIKEIMRGIILVDTHTNLQVSSSCGNSRIVAEPIIIETGNCTINILN
FT                 YTFHREEHFEPKEEYIVPTYNRKPETVNNPYDQMDTISIDNLQYLEEIRLT
FT                 TQQYRRNTIIGGTVFIIIIVSLLFLTAIIRKKNDNLVKITSEKPLDDPENA
FT                 EGKATEGIPEAIRFVNLPATSLPVSRPRTIDNPRGE"
XX
SQ   Sequence 6659 BP; 2564 A; 1313 C; 1228 G; 1554 T; 0 other;
     ggcgcagtca aagtagcaaa gtggttaaac tgtgtgtgaa gagttagcgg agcggatatc        60
     agctttcaat tcatcaagtt tacaaagagg agaaacccta cgtccaacgg aggacacctg       120
     ttaacccggc ggaagctgtc ttgaagagca tattcaggat ttgtggttac taggaggacg       180
     aacccaccac ttgcaaccta cccccagcaa accttcggac tccctgatgg aaatattcat       240
     cttgtaagta ctattatcta tcattatttt tcacaaaaag tgttcaaaaa gtgattatta       300
     aaagcgaata ttgagtgaaa ttgtttttcg agtgggagcg aatataacac gcgaataaat       360
     catttcctaa ttctcgcaaa ttaaacgcgc tcataagtga aaccactgtg ggtaaagaaa       420
     cgaaaaattg aacggacaca aaaccgtcat agcatttaat taccagtgag acctaaaaca       480
     taggcaaacg aattcagtgc aaagtgcaac gcgaaaacga aacgatgtca gaatctaatg       540
     ctgcaaacgg caacagccta aatgctgagc cagcagaaat gttaataacc cccgaccagc       600
     tgttggcgca agtcgctcag ctgacaaata atcagaacag cctgattgca accattaacg       660
     ctttgcagaa aaaggctaaa aatccatttt taaattttca aatcccggat caaattaaga       720
     tcattcctga gttcaacgga aataaaaaag agacgcttgc atgggtgcaa gacactcaag       780
     aggcgctcga gttatttgaa gattttgaat tagatccgtc ttacaaacaa attatgaggt       840
     tcgtaaaatc aaaaatagtt ggagaggcca gacaggtctt aatcgctgca ggaaatccca       900
     gcgaatggga tgaaattaaa gatgtgctcc ttaacgcatt tggagataaa cgagacatta       960
     cgtctcacat acaatcatta ttttacgtga aacagggcaa aagttcactg gatgagtact      1020
     ttcaaaaagt caaatcgatt gatactgcaa ttaaatcgac agccgcccag atggacgaat      1080
     ataaagggtc tacagacgcg gtcaataaat tgattagttt gatgactcaa actaggtata      1140
     ttgatgggtt aaatggcgat acgttagcca tgtacgtgcg gagttaccgt ccaaagacct      1200
     tagaagaagc atatgaggtg acaatacaac actccaacgc ttcattccgg caaagaatgg      1260
     aaactcggca attgtcagag aactacaagg gtcacaatat caaaaacgga aattttgcta      1320
     gtaattatca acaaccagca aataccgttg ggccaaattc aaaccccaaa taccaatata      1380
     acaaaagtgg caccccgagc aacaatttcc aacagccagg gtatcacaaa caaaattccg      1440
     gcaaattcaa gatcaagcct gcgacagacg aggacgcatc aatgcgaacc cacgtatcaa      1500
     aaatgcaaat gaatagccac acacagcaac gaaaggaatt tgaagcgaat caagaagacg      1560
     aaactacaaa tgaaacgatg gaagattctt tactcgattc tgacgatgac gaatgtttca      1620
     attcggacga gataaatttt catcttgttc aaagaggaaa accagaaaaa tgatagaaac      1680
     ttccaacttc ttaccataca tatcgatcat gacaacgaag ggcgagttaa agtttttagt      1740
     tgacaccggt gcaaataaaa actatatctc accagcgcat gtcaatatag aaaactgcaa      1800
     aaatgagcca acttccacta taacaaattt atcaggaaaa cataccataa acaaatcagc      1860
     ttcaatagat atttttggaa taaagaagaa attaaaattt ttcatattca aatttcataa      1920
     gcttttcgac ggcctagtcg gctatgaaac acttcgtgac ctaagagctg tccttaatac      1980
     agcaaacaat accctaaaaa tcggtagaaa gatcatcaaa atgaaaaaaa tgataccaga      2040
     cgagcacaag ataaacctca cagagcacga gttccaaatg gttaaaattc cagttaaaga      2100
     aaagggatca tttataatag aaaaggaaat caacatgcaa cactttacaa ttttaccggg      2160
     gctatatgag gcaaaaaaag gtaaagccat tatggctata cgaagggaca attacgaacg      2220
     cccgttggag atcaatgtta atgaattgga atatggaaaa gattattacg aaattgaaaa      2280
     aatacctttg aaaaataaaa caaagatata caatattagg aacgaccact taaatgaaaa      2340
     ggaaaactca gctctcgagg aagttatcaa caagaataag gaagtattat tctgtgagga      2400
     tgacaaactc acattcacac ataagataaa acacaaaata agaactacag ataacattcc      2460
     cattcacact aaatcataca aataccccaa agtatttgaa gaaatagtgc ggaaacaggt      2520
     agataagcta ctagaagacg gcattgtaag agagtctata tcgccttaca catcacccgt      2580
     ctgggtagtg cccaaaaagc cagacgcttc gggtcaaaag aagttcagat tagttataga      2640
     ttatcgaaag ctcaatgaga aaacaataag tgaccgatat cctataccag aaattaccga      2700
     aattctcgat aaactaggca gaacctgcta cttctcgact atagatcttg tttcaggttt      2760
     ccatcaaatc caactggatg atgaggacat cgaaaaaaca gcattttcta taaactcagg      2820
     aaagtacgag ttcacccgca tgccattcgg gctgaaaaac gctccggcga cctttcagcg      2880
     tgttatggac tgtgtgctta gagaggaaat tggaatatgt tgcctagtat acatggacga      2940
     cataattata ttttctccat cactcgaaca acacaaaatt gacctgaata gagtcctgaa      3000
     taaacttaaa gcagcaaatc tgaagattca acttgacaaa tgcgaattct tcagaaagga      3060
     agttcaattc ttgggacata ccgtttccga agatggcgta agacctaatc aagacaaaat      3120
     tgaaacaata aaacaatggc cattgccgaa gacagaaaaa gaggtgagac aatttcttgg      3180
     aatcttaggc tactacagaa gattcattaa agattttgct aggctagtta aaccactaac      3240
     ctctcttctg agaaaagatc aagagttcgt aatgactaag gaaatagaaa catgtttcaa      3300
     caaatgcaaa gaggttctca tgagagaccc cgtacttatt tacccggatt tttctaaaga      3360
     gttcatcttg accactgacg caagtgactt cgcgatcggg gccgttctat cacaagggcc      3420
     tatcgggaaa gatcaaccag tcgcatttgc ttctaggaca ttgaatagaa ccgaagaaaa      3480
     ctattcaacg accgaaaaag aatttctagc aatgtattgg gcggtcaagc attttgaaca      3540
     ttacttatgg ggccgaagat tcaaactaat cacggatcat cagccgctga cctatacact      3600
     aaccaacaca aataaaagaa ttttcagagg gaaactagaa ctcgaagggt acgactacga      3660
     gttgatttat aaacctggca ttaataatgt agtagcagac gcgttgtcca gaattaaacc      3720
     tggagaagtg aacgccaatg tccaggtaga aataaacaac aatgaatcag agagcgatgg      3780
     cgctaccgtg cactctgcag attcaagtga tgattactac atttggtgca cagagaagcc      3840
     tatcaacgca ttcaaaaccc aactcatctt gaaaatttgt cggattgaat ccgaagtatc      3900
     agaagcaatc tttccaaatc gtcgtcgtat tacaattctt agaccgttat atacggaaat      3960
     agacatcgtg aatattttca aacgatatct caaccctaga ggaacaaact gcttgagagt      4020
     cccaatagaa ttgaggcaac tagtacaaga gacatataaa aaacacttcg aagctaatcg      4080
     tacgtacaag attttcattt cagagatact tttagaggat gtaagagtgg aaaaggaaca      4140
     agatgatctg gtaaaagcta cccatgaata tgctcatcgt ggtataaaag aaaacaaggc      4200
     acaaatcctt acaaggtatt atttcccaca actggatcga aaggtaagaa ctctggtcga      4260
     aagctgtgag acctgtaaaa agagtaaata cgacaggaag ccaccacagc taattcgaaa      4320
     aagtatccaa ggtgagaaac cgttcgaacg ggttcacatc gatgtgttct ttatgaaagg      4380
     acttaaatgg atgacgatag tcgactcttt ttccaaattt gctaacataa tccccttgga      4440
     aacgagaaca atagtggaca tgaagagggc agttagcgaa cacataagaa ttttcggaag      4500
     acctcagacg attatctgtg accaagaacc ttcattcact tctatagact ttcaaggatt      4560
     tttgaatgat ctcggcatta ctttacacca tgccagtaac tctcagtcca atgggatagt      4620
     agagagattc cattcaacaa tcattgagct ctatagaacc cttacaccta aattcccaag      4680
     aaaaccaatt gtcgagatgt tgaacttact gactgacatt tataataata caatacacac      4740
     tgcaacaaaa cgaaaaccca gagaaatcat atttaactat tcaaactcgc cgaatgtaca      4800
     agaactgcag gatgcagctg acaacttgca atcagcagtt aaggtacaac ttgctaaaaa      4860
     cagacaaaag tacattgaca aaaacaaaga caaacgacaa ccacatgacg tacgacccaa      4920
     cgataaaata tgggtgaaaa acacccaaag actgaccaaa gacaaagacc catataaatc      4980
     cgtcgaagtt aaatcaaata acgaacttac attcgaagat actaacaatg taaaaatcca      5040
     caagaacaga ataaaaaagt aattaaaacg atttcttttt tctttaattc acagttttct      5100
     actaatcaat aatagcttgg caacaatcta cagagacgtg aataatgaga acgggttgat      5160
     agctttcaaa attgatacag tcaggattaa actaggttat gaaagaattg ttaaaaagat      5220
     tagtttagaa tcaatagaga taaacctcaa tcacatagaa aaaatagcat tgtctttcaa      5280
     aaccagggac cacctacatg aaacattgtt aagtaaaata gataaagcta gggaaaaatt      5340
     aaaaggcctt cagcctcaca gacaaagacg cggcttgata aacgcattag gaacagtagt      5400
     taaatatata gcaggaaacc cagatcatga agatttacaa attatacatc aaagtttagg      5460
     aaccctagaa aaccatgaaa ataaactcac tataaatcaa agaaagcaaa ttaaaatcaa      5520
     tacagacttt cagaacagga tcaataatat aacagacacc atcaggaaga ttagctctca      5580
     aatatcatta attaacaata cattaagaga agataccact ttggaacaga taaatcttat      5640
     atttagcaca gatttactta ttcacgctct ggaagattta gaagaacagg tagaattttc      5700
     taaacaagac cttttaaata aaaacatact ttctttcgag gacaaaagat atattttcaa      5760
     tagattggta gaacaaaact tggttttaac aacaatagac gaaatctttc agtatagcgc      5820
     agggagctta acaatcagca aaaaccatat cgtcatactg gtgaagatcc caatactgga      5880
     agtcaacccc tacgacctac tcagaattca acccgtcagc atcaaccaaa caacaatcga      5940
     cacggatata caactggtag ccaaacgaca aaatcgcgtg atcccacaac agaagatatg      6000
     caaaatctgc gaagaaacta tgccattaga ggacgagtgc atttacagga tcctaacaca      6060
     tcaaaagcca aaatgcgtta tgaagaagac agaacgaaaa acctggataa aggagatcat      6120
     gagaggtata atattggtag atacacacac caacttacag gtttccagct cttgcggcaa      6180
     ctccagaata gtagcagaac ccattatcat agaaacgggt aactgcacca taaacatcct      6240
     caactacaca tttcacagag aggaacactt tgagcccaaa gaggaataca ttgtaccaac      6300
     gtacaatagg aaacccgaaa cagtcaacaa cccgtatgac caaatggata ccattagtat      6360
     tgataacctt caatacctag aagagatccg attaacaacc caacagtacc ggagaaatac      6420
     cataattgga ggtacagtat ttatcataat catagtaagt cttctcttcc taacagcaat      6480
     aattagaaag aagaacgaca atcttgtgaa gattacctct gagaaacctc tagatgatcc      6540
     cgagaatgca gaaggaaagg caacagaagg tataccggaa gcgatacgat ttgtcaatct      6600
     tccagcaaca agcctacccg ttagtcgacc gaggacgatc gacaatccta ggggggagg       6659
//
ID   Gypsy-683_AA-LTR repbase;    DNA;    INV; 377 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-683_;
KW   Gypsy-683_AA-I; Gypsy-683_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-377
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-377
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2098-2098 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 377 BP; 126 A; 85 C; 87 G; 79 T; 0 other;
     agttatggaa caccctactg ggcagtacca atacatcgac caagacgcac gccgacggta        60
     catctacgtc gacggctacg catagcaaca gtggcagacc cggggcgaca tagcaacggc       120
     catggccaaa ccaacggatg caccgaaact gcagatccag cacgacgacc gaccaactca       180
     acgtggacga ccaaaggtag acaacgcatc gaacgatatt ggttttgctg agtgagctag       240
     gttatagtta gttagaatta ataaaaggcc ttgtcaattg taaatcgaac tcagtctgaa       300
     gtgaagagtc ataatatagt gaacaaagtg taataaagtt atttttttat aataccgcga       360
     gatatcacgg cataatt                                                      377
//
ID   Gypsy-684_AA-I repbase;    DNA;    INV; 6707 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-684_;
KW   Gypsy-684_AA-I; Gypsy-684_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6707
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6707
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2054-2054 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6707 BP; 2526 A; 1296 C; 1214 G; 1669 T; 2 other;
     ggcgcagtcg tgtagtcaaa tggttaaact tggtgcgaag tgctaacgcg agcgaacatc        60
     ggttatcaca atcatcgagt tttcaaagga ggaggaattc tacgcgcaac tgagggcacc       120
     tgtagtccag cactagctgt cgtggagcgg atatccagga tttgagacta ccggagaatt       180
     gttcccgcca tttggaaccc atatcccaac tgcactcgga ctccctgatg aaaggaatca       240
     tcttgtaagt actaaacttt ttgttaccat tacaaagtga caagtgtatc tcgaaaagtg       300
     cattagtgaa aattctattt gaggggagag tgaatattga acccaaataa tttttatctt       360
     aatgttcatt taaaaagtgc actaacagaa ttttgtttgt ggggagagcg aatattgaac       420
     ccaaataatt tctgcattag tgttctgcaa ccaagcaaac aattgctcat taagtgtgtt       480
     ggaattctat ttggagtaag agcgtatatc gagctcaaat aaatttcgct aaacacaacc       540
     aaaattagct cgaaaacaaa aagagccata ctattcaacg cgaataggaa agtggatatg       600
     actaacgaat tgaccaaaga agagcttatt gctcacgtac aaaggttaac ggagaaccag       660
     caatcgctat ttgatacaat agccagattg caaaataaag cagaggatcc atttttggca       720
     tacaatacgc ccgatcccat aaaaatttta agccttttta gcggcaacaa aaaagaaaca       780
     caagcgtgga tcgaagacgt tgaagacacc ttaagtctct tcgaaaagca taaaaatacg       840
     ccaacatact cccagatcat acgcgcggtt aagagtaaaa ttactggcaa tgcaaaagaa       900
     atacttattg cagccggaaa cccgagcact tgggacgaaa ttaaagaggt gctactaaac       960
     gcgtacgggg acaggaggga cctggcctcg catttccagt cgctctttta tatcaaccag      1020
     ggcaacaaaa caatcacaga atactacaat ataattaaag gcatagatac ggcgataaaa      1080
     tcaacagctg cggtaatgga tgattacaaa tctagtacga aggcgataaa taaattgatt      1140
     ggtcttatga ctctcacaag atttattgac ggtcttgggg aaaagttatc aatgcacgtc      1200
     cgaagttatc gtcccgaaac attagaagaa gcttacaaca taacgatgca atactcaaac      1260
     gctgcttaca gacagaaatt agaacaaaaa cctaatattc cacagcaaca tttttccaaa      1320
     cgcccttcag gtaatccaaa tcaatataat aaaccacaat ttaacaattc aaataacaat      1380
     caagcctcaa gccagtctgg acaatttaaa aatcatgcat ccaaacagct gatcgataac      1440
     gatgtttcaa tgagaacctc ccgttcaaaa atgcaaatta acacacacgt aaacggtaaa      1500
     agcgacgaca gcaaacttga gccagacgaa ccagaatttg acaccccacc ggtcgtcgac      1560
     actactttgg aatccgatga agacgattac ttcattggag aagagctaaa ttttctccag      1620
     ggtctaagcg acgatccaaa caaataaata ataacaactt tctgccgtat attactttcg      1680
     tcaccactaa aggcgagttg aaattcttaa tcgacactgg cgcgaataag aattacattt      1740
     ctgctgataa agtaaaccta gattactgtg acgttgtaaa aggtgtaaag gtctcaaaca      1800
     ttaaaggggc ccacaaaatt acacattcgg tttcattcga tccgttccag atcaagaaga      1860
     aactgaaatt ttatgttttt aaatttcacg aatttttcga tggtctgatc ggatacgaat      1920
     ccttgagaga cctaaaagct caactgaata tttccaagaa cacattgaaa gtcggaagaa      1980
     aagagtttaa aatgaaacaa aaatttctca atgacttaag gatcaataca acggaacaag      2040
     aatttcaata cttgacttta aaaacttcaa tggacggaga ttttacaatc accgatgaaa      2100
     gaaatttcgg taaattttca attttacctg gaatttatag aagtctaaat ggaaaggcaa      2160
     cggtagcaat tcagaatcat ttgaaaacac ctcttgagat aaatatgaac caaattgata      2220
     tcaagccgga taaatgcgaa attgcagaga aaccaaacat cgagatttct cctaagaacg      2280
     ttgattactg cttcaggaat gagcatatga ataatgaaga gaaaaaagct ctcgaagaag      2340
     tgatccataa aaacctagaa attctttatg acgaaaacga aaaacttacg tttacgcata      2400
     aaataaaaca taaaattaga actaccgaca atttgccgat ccacgttaaa tcttacagat      2460
     atccacaaat ttttgaacaa gaaattcaga aacaagtgaa aaaaatgttg aacgatggta      2520
     taattaaaga atcaatttct ccatatactg cacctgtatg ggtcgtacct aaaaaggccg      2580
     atgcctctgg gaaaaagaaa tttcgattag ttatcgatta cagaaaacta aacgagaaaa      2640
     ccataaatga taaatatcct atacccgata taaccgatat attggacaag ctaggtagag      2700
     cccgttactt ttccacaatt gatctggtat ctggtttcca tcagatacaa cttgatgaag      2760
     aagacactga aaaaaccgcg ttttccgtga attcaggcaa atacgaattc acccgaatgc      2820
     cttttgggct taagaacgct ccggcaacat tccagcgcgt aatggattgt atgctcagag      2880
     atctgatcgg agtttgctgc ttcgtctata tggacgatat aattatattt tctacctccc      2940
     ttgaagaaca tcaacttcat cttgacatga ttatgaagcg attaaaggag gccggactaa      3000
     agattcagct tgataagtgt gaattcttta ggaatgaagt tcaattttta ggtcacacgg      3060
     tcaccaaaga cggagtgtta ccaaatgagg acaaaataaa aatcataaga gaatggccaa      3120
     taccaaagaa tgtcaaagaa attagacagt ttctgggaac tttgggatac tatagaagat      3180
     tcatcaaaga tttcgctaaa ctagtgaaac ctttgacgaa cttacttcgc aaagacaccg      3240
     agtttgaaat cactccagaa atggaggaat gttttcaaaa atgcaaggaa atccttatta      3300
     gagatccaat acttatctac ccagacttcg agaaagagtt tattttaacg accgatgcga      3360
     gcgattacgc cattggagcg gtactttctc aaggaacacc tgggaaagat cggccagtag      3420
     catttgcatc tagaacttta aacgtaacag aagaaagata cagcacaacg gaaaaagaac      3480
     tcttggcaat cgtttgggct gtaaaacact tcaaatctta tttatatggt cgcagattta      3540
     agctggtaac agaccataaa cctttgatat actcactaac taattcgaac gataaaattg      3600
     taagatggaa gttacaattg agtgaattta attacgaaat cgtctataaa cccggaaagc      3660
     aaaatgtcgt agcggacgct ttatcgagaa tacaggcgaa cgaagaatta aacgtgaata      3720
     cagcggatac tgatgaagac ttggaaacca ttcattccgc agatactagt gacgattact      3780
     ttataaagtg cacggaaaga ccgattaatt ttttcaagac tcaactgtta ttcaaaattt      3840
     ccagaattaa aacagattct catgaagcag tttttccaaa atataacaga tacatcatat      3900
     cccaaccggg atacacggaa gaggatatgg tgaatgtatt taaaagatgc cttaacccta      3960
     atggaattaa ttgcataaaa gcccctgttt cccttctaca gcttattcag gaaacataca      4020
     aaaatcattt ctctgctaat aaattataca aggttttcat ttcagagaca ctgttggcag      4080
     acgtcagaat gggcaccgag caggacgaat tgatcgaaaa gacccatgaa tatggacatc      4140
     gtggattgaa agaaaataaa agacagattc tccaaaacta ctttttcccc gagctagaaa      4200
     gaaagctcaa aatttttata agctcttgcg acacttgcaa acgtagcaag tatgatcgca      4260
     atcctccaaa attaatacaa aagagtactt ttggtgacac tgtctttgat agaattcaca      4320
     tcgatgtatt tttcatgaag ggacaaaaat ggcttactat agtggattcg ttctcgaaat      4380
     tcgcaaacat aatttcgata caaactagaa ccatagttga tatgaaaagg gcaatcaccg      4440
     aacacattag acagttcgga aggccgaaaa ctatagtatg cgatcaagaa ccttcattta      4500
     aatccattga tttcatcggg ttcctgaatg acttaaatat tgaaatccac catgcgagta      4560
     gctcttgctc aaatggaatt gtcgagagat ttcatagtac tctaatcgaa ctttatcgga      4620
     ctctccattc aaaattcaaa gatctcagtc ttaacgaaat aatgaacgtt ttggtcgaca      4680
     tctacaataa tacatttcat tcggctatca atcaaaaacc acgggaagta gtcttcaaca      4740
     catcgaattt aaccaatcag gaagaaatag cagaaaactt ccataaaatt caatcagccg      4800
     ttaaactcga gttaaataag agaaaaataa atcacgagaa aaaattckcg gataatgaaa      4860
     gccctaaaca attaaatcaa aacgacaaac tttttattaa aaacagtcaa aggctaaata      4920
     aagatcaaga cccgtataaa atttcaacag ttaaaaccaa taatgaactc acatacatag      4980
     atagtaatga cattaaaata cacaaaaatc ggattaaact ataaaaaaaa caacacataa      5040
     aaccccaaaa cccataacag aataaaatat taaacaatta aaatatattc cttttcagac      5100
     taatcctcat ccacatgsta aacgcgacca catacaagga aatatccaat aaaaatggca      5160
     tggtcgccat aaaaataaaa acagtgcgga taaggacagg atttgagaga acgttacata      5220
     ggattaattt agtatctcta gaggataaca ttaaatacat cgaaaagatc actcactcgt      5280
     ataaaaccgt tgaacattta gagcaaaccc ttcaggagaa gttaacaata gctaaagaaa      5340
     aactttctag tttgatccca cgtaggacaa agagagcact gataaatgtc cttggaacag      5400
     cgattaaatt tattgcgggg aatcccgata acgaagatct tgagatcata catgaaggat      5460
     taggaatatt aaaaaatcag gaaaataggt taactcaaaa tcaaatcaag caaatccaaa      5520
     ttaatgaact ttacaaaaac aaaatcaata acataacaga ttctttaagg aaaattagtt      5580
     ctacaatctc tagagaattc aacacagttc aaaaccttag atcaaactta gagttcatca      5640
     atctcatttg gaatacggat agaataattc acattttgga atctatagaa gaacaaatag      5700
     agttctccag attaggcctc ataaacaaga atatcctttc gttagaagac aaacaggcaa      5760
     tcgcagggaa acttaggaag caaaacatcc cacttaacta ttttgacgaa atctttcagt      5820
     tttgctcagc aactatcggt atcagcggcg gacaggcgat ggtacttgtg aagacaccgg      5880
     tactagacga taaggactac gacctcctgg agcttcacac gctaaaggtc aacaattcga      5940
     ggatagaaac tgacataaac ctggtggcaa agcacggcaa cctgatctac gcccaaacgg      6000
     aaaaatgcga catttgcgat ggtatcaagc ccattgagga cgaatgcatc tataatatct      6060
     taacacatca atcaccaaaa tgctcattcg taagtacaaa acgaggattc caagccaaag      6120
     agattacgga cagcgtgatc ctaattgaca caacagagaa cattgaggta aacgactcat      6180
     gcggggattc aagaatcatt accgaaccaa caataataga gatcgggaat tgcacaatca      6240
     gagcacgcaa tttcacattc tccggtaaaa tagatgtcat aagccaagac aactacctaa      6300
     tcccaattta cagcaaacct ctgcagaagc caaactacac attcaaggaa gaggaaaacg      6360
     ttatgttgcg gattcagaat cttgaagaac taagcgagat tcaactttcc cttaacagca      6420
     cacataaaag ggtaactttt ggaggcttag ccctcctggt tttaatatct ctttggttcg      6480
     tcattgtttt tctttacaag acaactcaca acaaggatgc caaggaaaac cacgtcgacg      6540
     ctctgctgct tagaacaagg aatctaggag aagtagaagc aaccgatggt ccaaatactc      6600
     aaacaacagg aaaggatccc gagaagaagc ggttgaaact catcccagaa ccaaggttcg      6660
     agctcctgaa acatcaaacg aggacgcttg atacttgagg ggggagg                    6707
//
ID   Gypsy-684_AA-LTR repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-684_;
KW   Gypsy-684_AA-I; Gypsy-684_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-334
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-334
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2099-2099 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 334 BP; 100 A; 65 C; 81 G; 88 T; 0 other;
     cgttaggaac agagttgccc acgtgccagc caatcagaac gaaccatcga tcggcccatc        60
     gatcgatgca acatagaagt gatgacccag cggattatcg aggtgcgatg gcaacatgca       120
     cccaaccgac gagaacgacg acggatcgga aggtgtcgat gcagactttg accgggaccg       180
     ttttgctgag tcgataggtt tagtcaataa aaggtttagc ggtaggaaaa ttcaatcagt       240
     ttcgagtgtg aagtgattaa tatttgttgt aacttagttt aatagtgaaa taaaattatt       300
     tttttatcaa actctgatcc ttcagagcat ttct                                   334
//
ID   Gypsy-685_AA-I repbase;    DNA;    INV; 4184 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-685_;
KW   Gypsy-685_AA-I; Gypsy-685_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4184
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4184
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2055-2055 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4184 BP; 1261 A; 883 C; 1050 G; 990 T; 0 other;
     tttggcgacg aggatggcca gttactagtg gttctgtttt gatacgttaa atgattaaat        60
     tcggtgtatg tttggatacg aaaatagatt cgattcggtg aaatcaaaag ataattcgga       120
     cttttgcggt tatgtaaaca aacaccctca aagggaacag tgcgcgaaac ggtttaatcc       180
     gtcggaagaa aatggaaaac ccagcaagct ccaacttgcc aaaatttgac cccagcgata       240
     cgtcaacagt ttcgaatcgc tggaaaaagt ggaagcggtg cttcgaaata tttttggacg       300
     taaacaacgt gacacggccg gaaaggaagc gttcgtattt gctgtactac gctggaaacg       360
     atgtccaaga catatttttc aaccttagag gagatgctga agtaaacatc ccagaaggat       420
     ccgatgtgta tgcagagtcc ctaaagctgc tggacgatta tttcctcccg ctcaaatgct       480
     tgccccgaga gcgccatatt tttcggaatc tcgagcaagc tccagacgaa tccattgaga       540
     aatttgtgct tcgacttcgc gagcagggaa atctttgtga ttatgccgat tggttggacg       600
     aaaacatcaa ggaacagctt tttgaaaaag ggaattccga cgaacttagg gccaaaatat       660
     taacgaagcc gaatatgacc cttgcccaga ctgtggaact tggaaggtct ctagagacga       720
     ttgccaaaca tcggaagaac ctggtgaagt gtgaagaaat taaccggatt gccagttcaa       780
     aaggagaatg ttttcgatgt ggatacagtg gtcattatgc caacgatgac gagtgccccg       840
     ctcgtgaaag aaggtgcgaa aagtgcaatc ttgttggcca ctttaagaga tgctgcaaaa       900
     ccaaactgaa ggagaagaaa gccgctcgaa aaagtaaaac tcgccaccga agcaaagtga       960
     accaggtagc cgacgaagac gacaacgaca gcgaagaagg ttccgaagaa tcgtgcagcg      1020
     atgaagaaag cgtcaactat gtatttgcca tcaacccagc tgacgacgac cgcgttacat      1080
     gtaaggtagg aggagtgaag ctcgactgga tgattgattc cggcgccggg gtcaatgtga      1140
     tcagccaaga aacatggtcg ttcctgaaac aacagaaagt tgaaatcgag catcaaacta      1200
     acaacgtcac gaaaaccttg ctggcgtatg gaaatcatcg actgtcggtc caaggaatgt      1260
     tcgtggctaa aatcgaaacc aagaaatcct gcgtacgcga caaagttttc gttgttaagg      1320
     agagtggaat gaatcttctg ggacggaaag cagcgaagga cctcggcatt ctaaaaatag      1380
     atacgtcgat ctgcaccatt acgtgtgatg agaaaattgg aaaggttaga ggagtcactg      1440
     tatccattca aatcaatcca gatgtgaagc ccgtccaaca ttctcaatgt cggattccaa      1500
     tacctcttca accgaaggtc gaggacgaat tgagaaagct acttaaagag gatatcattg      1560
     aacgagcacc acgtgattcg ccgtggatat ccaggttggt tgtgcgaccg aaggctggaa      1620
     atgaagttcg tctatgcgtc gacatgcgag atgccaataa agcgatagta ccacaacatc      1680
     atcccctgcc tactttcgac gacattattc cacatctaca caactgtaaa gtattttcta      1740
     aaatcgatct gaacaaggca ttccatcaag ttgaattggc ggatgaatct cgaccaataa      1800
     cgactttcgc agctcatgac ggctactatc gctacaaacg tctgactttc gggatgaatt      1860
     gtgcctcgga agtgttccag agtgtcatcg agagagtgtt ggctggaatc aaaaatgtga      1920
     aaccgttcat cgacgacatc ctggtgtttg ggcaagacat ggaggaacac gacgcagcgc      1980
     tggcggctgt cttggatagg ctaaaggaat gcggaatcac tgtgaataga gccaaatgcg      2040
     aatttcggaa ggatgaagtg actttcatgg gccaccggct gactaatcaa ggtattaacc      2100
     cctccgatga aaaagtcgat gcgattcgtc gactcagaaa tcctgcaacg gttgaggagc      2160
     tgagaagttt cttaggttta atcaactacc tgggtaagtt tataccaaat ctctcaacca      2220
     tgacagctcc ccttagagaa ctcttgaaaa aggatttaaa gtttaaatgg gaatcgagac      2280
     atgctgaagc atttgaactc attaagcgcg aagtttcgaa ccctaggaac ttaggttact      2340
     actccccaca cgatgaaacc attctgatag ccgacgccag tccagttggc ttgggggcgg      2400
     ttctgctcca ggtaagagat gggaaaaagc gagtgatttg ctatatcagc aaaggtcttt      2460
     ctacggccga gagggctaat gctcagaatg aacgggaggc gctggcgtta gtttgggcga      2520
     cggaaaggct tgaaccatac ttgcgaggat tggagttcaa attggttacc gaccacgaac      2580
     cgctgaaggt aatatttgga agcaggagca agccatgtca ccgcatcgaa cggtgggctt      2640
     tgcggttgca gtcctaccgc tatacgatcg tacatgtatc cggaaaagca aacattgctg      2700
     atcctctgtc taggttgcca gagttccaca aatgttcaac atacgatcaa attggagaat      2760
     ccatgttgct ggcgatcttg gacacggcaa aaccgactgc cttaactatc gatgatatac      2820
     tcactaatac agtgaaggat gtagagcttt catcagtcaa agaagcgctg aataccggtc      2880
     aatggggagc accgctgaaa agatatgagc cgtttagaga agagctaagc tgtattaatg      2940
     acatcgtgat gcgaggtact cgaatcgtga ttcctgctgc tcttcgagac cgtgtaatga      3000
     agctctccca catcggacat ccagggatag aacgaacaaa acagcggctc cgtggcaaag      3060
     tctggtggcc acaaattgat aacgatgcag aacgaatggt gaaatcttgc ttggactgtc      3120
     agctagtgtg cggctctacg cgaaaagaac cgatgtcaat aagggagttg ccaagccaac      3180
     catggcatac tttggcaatg gatatgttgg gacctctgcc gtctaatgat tccatactgg      3240
     tagtgatcga cttgtacagt cgctatcgcg taacggagat aatgcaaact actacttctg      3300
     atgacatcat tgcgaagctg cgaatgattt tcttcagact gggaattcct gcgatccttg      3360
     tttctgataa tgcgaagaat ttttcgagtg taaaaatgga agacttttgt aagcgtcttg      3420
     gtatccaact taaacacacc actccttatt ggccacaggc caacggtgat gttgagcgtc      3480
     agaataggtc gattctgaag attctgagga ttgctgagat aaataagtct gattggaaaa      3540
     gtgaccttga agaggcaaac tacgtgtact cattggttca acatccggct acgggacgct      3600
     cccctgctga agttctgttt gggaggaagt ttcgcgattg gatacctcag ctcacttgga      3660
     atgaaactgc taacgattct gaaatcaggg atagagactg gattcacaag cactctgcga      3720
     agacctcgta tgacatcaac caccgaactg caagtgctga attacaaccc aacgatcgtg      3780
     tactgatgcg caatttggtg ccccaaaata aattatcgcc gttgtttgac ccagaaccag      3840
     ccacagtgcg tgagaaagtg ggtaacagtg taatcgtgga gactagtgag gggaagcagt      3900
     acagaaggaa ctcttcgcac ctgaagaaac ttgttaacta cgatggctca gaaagttctc      3960
     aactgcaaga aacttctggt gaggaatgga ttacaccctc atcgaacatt caaatttcgt      4020
     ccagcactcc agcatctgca aatcctggtg tacaatccgg tgcgtttgca aggccaagaa      4080
     gagaagtaaa gcgtccgctt cgttttgagg actacgcgat ggatgagtga ttgaaagtgt      4140
     atttagcagt cacagggaac aattaatcga cggaaagggg gaaa                       4184
//
ID   Gypsy-685_AA-LTR repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-685_;
KW   Gypsy-685_AA-I; Gypsy-685_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-160
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-160
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2100-2100 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 160 BP; 67 A; 14 C; 39 G; 40 T; 0 other;
     tgttatattg acaaatgtaa tactggcaac acgggagtag aaacggggaa tgtaagaaag        60
     aagaaaaaga aagtagaaga ataaaaatgg tcaaggaaag taaacgtgtc ttttgatccg       120
     agattaaatt cgttgttgaa atcattttat ggaggtaaca                             160
//
ID   Gypsy-686_AA-I repbase;    DNA;    INV; 4214 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-686_;
KW   Gypsy-686_AA-I; Gypsy-686_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4214
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4214
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4214 BP; 1240 A; 963 C; 1119 G; 892 T; 0 other;
     tttggcgacg aggcggaacg aatccgtgga agtgattttg ctaaaagttt tgctcgaata        60
     ggttcggatt tgacgtgaaa tagaagggag catccggtgc tccaagttgg acaaaaacga       120
     aaacattcgg ttccgcgttc gcgacgaaca gtgattcaat tcgaagaaaa ataggacaaa       180
     atgttcgatc cgatgaatca gtcccatctt ccggcatttg atccggggga cacgtccact       240
     gtctccgcgc gatggaaaaa gtggaagcga gcattccaaa tttttctgga tgtcaacaat       300
     gtcaacatcg ctgcgcggaa gaaatcgtat ctcctacatt tcgtaggatc gcaggtgcaa       360
     gatatatatt ttggcctgca aggagatgaa gaaccagttg tacctaacgg ctccgacgtg       420
     tacgaagagg cagtaaaatt gttggatgcg tactttctgc caatgaagtg tctaccactc       480
     gaacgacaca agttcaggaa tttggagcaa gcggccgacg agtcaattga gaagtttgtg       540
     ctcaggctga gagaacaggg caacctgtgc gaatatgatg atcatctgga ggacgaaata       600
     aaggaacaac tgtttgagaa aggtaactcc gatgatcttc gagcgaaaat tctctccaag       660
     ccgcagatga cgttggcaga aaccttagaa gccggccgct ccttggaaac gatcggcaag       720
     cacaggaaga atttgaagct caactcgaag ccggtggagg tgaacaaagt atcaagatac       780
     tccagcaaag cgaagaccaa tcagaaagga gaatgttatc ggtgcggcag agctgggcat       840
     tatgccaacg acgaatgctg tccagccaag gatcggaagt gcgaacgttg tggactggta       900
     gggcacttca agaagcgctg taatacgaat ccgcggaaga agaagagtcg agacgataaa       960
     aagctgcgac aagtagttgc tgatttgcgg cttgctgatt cggacgactc cgatgacaca      1020
     gacaacgcta gtgaagaatc agaagaagag gaagaagtgc agtacgtgtt tgcaaccggt      1080
     ccggactgtg gggaaaaagt cgtgtgtgca gttgggggag tgaaaattga atgggtagta      1140
     gactctggcg ccggggtgaa cgttattaac cggcaaacct ggaactacct gaagaaccaa      1200
     aaagtgcgtg tgagttacca atcggctgac gtgaagaaac ccttgaaagc atatggaggg      1260
     cacccgatcc gggttgcagg catgttttca gccagcgtgg ccacgaagaa gagtgcgacc      1320
     gaagcggaca tttacgtggt tgaagaagga agttgttgcc tactggggcg gaagacggct      1380
     aaagcgcttg gcatcctgaa catcaacaca gcggtgtggg ccttacacaa cggagaaaac      1440
     gatcgaattg ggaaaattgt cggagcacta gcacaaatcc agatagatcc gacggtaaaa      1500
     ccagtgcagc agacgcaatg tcatatcccg attcccttgc gcgagaaaac agaaaaggag      1560
     atacagaggc tattggagca ggacgtcatt gaggaagcac caagggattc accatggatt      1620
     tccaggctgg ttgtgcgtcc caaagccgga gatgcatccg ctgttaggct gtgtgtcgac      1680
     atgcgggatg ctaataaagc aatcatccca cagcactacc cgttgccgac attcgacagc      1740
     atcattccac acttgaacaa ctgtaagtgg ttctccaaaa ttgacctgaa caaagccttc      1800
     catcaggtgg agttggagca ggagtctcgt gtaatcacca catttgcggc acacaacgga      1860
     tactatcgct acaagcgatt aatgttcgga ctgaattgcg cttcagaggt atttcaatgc      1920
     atcatggagc gcattctaac cggactgcca ggtgtgaagc cgttcatcga cgacgtgtta      1980
     gtgttcgctg caagcaagga agagcacgat gtcatcttaa aggcggtact ggacaggctt      2040
     gagtcgtgtg gagcaacaat caacaaacag aagtgcgaat tcggcaaaac cgaagtggat      2100
     ttcatgggcc atcggctgtc aggagaaggc atctccccta aagaagataa agtcgacacg      2160
     atcaggagat ttcgggatcc gaaaactgta gaagaactcc gcagcttcct ggggttagtt      2220
     aattaccttg ggaagttcat tccgaacctg gccacgctaa catctcctct tcggcaactg      2280
     ttaaagaaaa cttctcggtt ttcctggggc aaagaacaga aaatcgcatt cgccagaatt      2340
     aaggaagttc tctccaaccc caagaaccta ggatactatt caccactgga taagaccatc      2400
     gtcatcgccg atgctagccc tacaggactg ggggcggtgc tcatccagga gaggaatgat      2460
     cgcaagcgtg taatctgcta catcagcaag ggcctttcgg aaaccgagca ggcgtacgcg      2520
     cagaatgaga aggaggctct cgctcttgtg tggtccgtcg agagactgga aatgtatctc      2580
     cgaggtttgg aattcctcct agttaccgat catcaaccgt tgaaggtttt gttcggaccc      2640
     aagcaacgcc catgtaagcg catagaacga tgggcactac gactccagtc gttccgcttc      2700
     aagatcattc acatcgcagg taaagcaaac atcgccgacc cgctttctcg gttgccggac      2760
     ttcaaggagt gtactacgta tgatgagtat ggtgagtcca tgcttatggc gatcgtcgag      2820
     gtgaacaaac cggaagcaat gacactggag gatgttaccg tggcaacaat gaaggacatc      2880
     gagttgaacg ccgtgaagac agcaatatcg actggacagt ggacggaagc agtcagaaaa      2940
     tatattccct tcaaagatga ggtgttggta gtgaacgatt tggtgctgag aggtgaaaga      3000
     ttggtcattc cttcgtccct ccgtaagggt ttactcaagc tgtcgcacat tggacatcca      3060
     ggcatcgagc gcactaaaca acgtcttcga tccaaagtgt ggtggccgac catggatagg      3120
     gaggcagaga agctcgttcg ttcctgtatg gactgccagc tagtgagcca gcctggacca      3180
     ccagaaccac tgaaagttcg tgaacttcct ccggctcctt ggagctgctt aagcatggat      3240
     attttgggac cgctgccgtc tggagactct ttgctagtcg taatcgacct gtacagtcgg      3300
     taccgttttg tggaagtgtt gcgccaaaca tctaccgcag acattttgaa aaagctgaag      3360
     cccatactga ttcggctggg cttcccggat gtgctgctga cagacaacgc ggcgaacttt      3420
     tccagtagcg aaatgaagga gttttgtctt cgatatggta tccagctcag acatacgacc      3480
     ccgtactggc ctcaggccaa cggtgaggtc gagcggcaaa acagaagcat tttgaaaatt      3540
     ctacggattg ctgcgctcaa gaaatcggac tggaagaacg acctcgaaga gttcaactac      3600
     gtgtactctt taacgccaca cccagcaaca ggacgatcac cagctgaact tgcatttggc      3660
     aggaagttta aagattggat tcctcaaatt accaccaaac atttcatcga agatgagccc      3720
     atccgagatc gcgatcatgc atatcgtaca tcagctaagg aacaacacga cagagcgcaa      3780
     aatgcacgtg aatcaacttt aacggaagga gatctcgtct taatgaagaa cctagcaaag      3840
     cagaataagc tttctcctac attcctaccg gagcctgcta gagtaatcaa acaggaagga      3900
     aacagcatca tagtcgagac accagaggga gttcaatatc gtcgtaactc atcacacatc      3960
     aaaagagtcc caagtaattc cgttatgacc agtcacgaag tggaagatga agcagacctt      4020
     gacgaggaaa tggaaggagc atgggctacg ccaagaacag ctactcagtc gccttcgaca      4080
     caaccgacaa ccgcacaatc aacattggga cggccaacgc gtcataccag acgccctctg      4140
     agatacgatg actacgaaat ggatctcgaa ggcatagacg gacagtaaag tagcaaccca      4200
     gaagaagaag agat                                                        4214
//
ID   Gypsy-686_AA-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-686_;
KW   Gypsy-686_AA-I; Gypsy-686_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-159
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-159
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2101-2101 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 159 BP; 53 A; 17 C; 41 G; 48 T; 0 other;
     tgttgtgttt tgattaaaat actttgagag tgtaacacgg actgaaaagg aggaagagga        60
     ttgtcgaacg gactgtagag aaataaagaa cgtatgattt gctaagttga ttgaattcgg       120
     ttatattttc tcgttaaaag tccggaacag gtcgtaaca                              159
//
ID   Gypsy-687_AA-I repbase;    DNA;    INV; 4262 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-687_;
KW   Gypsy-687_AA-I; Gypsy-687_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4262
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4262
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (27-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4262 BP; 1326 A; 918 C; 1055 G; 960 T; 3 other;
     tttggcgacg aaagctgggt ttttgattaa attcgtggag aaccagatta aattcgatat        60
     aaaaaactag tgttttgttt cggcaccgtg tggatccgaa aaaaaagcga tttccgttga       120
     gtaacaggga atgctgaggc gaagaccggt caaaaagtga acctaacctc aaatcgtcgt       180
     gcgagctgct gctactaccg agtgtgtgca agcaaggaaa cgaagaaaaa taaaaagtga       240
     ttacgccaaa gttgcgaaaa gaaaatggac aacaaacctt cgctagcaca atttgatgtc       300
     tccgacacgt catcgatcgg aacccgttgg agaaagtgga agaggtcact ggaattattc       360
     ctggaagtga attgtattgc tcttgcatcc cgaaaaaggt cctacttgct gcactttgcg       420
     ggacctgagg tgcaagacat tttctatgaa atcgagggtc acgatgcacc accccctcct       480
     gggtctgacg tgtatagaga agcaattcga ctgctggacg cctattttgc ccctttggcg       540
     agcattccat atgacaggta cgtgttcaga agcatgaagc agggagaaga agagtcggtg       600
     gaaaaattcg tcggccggct tcgcgagcaa ggacggctct gtgactacgg aggagccctc       660
     gacatgcgaa tcaccgaaca agtgtttgat aactgccgtt ccgacgagct gcgcgaaata       720
     atcctgaaga aaaagctgtt aacagtacct gcgattattg aagaagctcg tattctggaa       780
     accgttaagc gtaacaagga ggaaatgaag aagctatcaa cccactcgga tgaaccgcaa       840
     gcatatcaag tgaaacgaga aaaaaagaaa gagatgtgtt tccggtgtgg caataccgga       900
     cattatgcca acgaccgggg atgtccggcc aggagcaagg tttgcgacaa gtgcaatatt       960
     attggccatt tccgaaagat gtgcaagacc aaattggacg gcaaacgcag tgcagaaaag      1020
     agaaagaaga accgagtact acaagttcgt aatctcgacg acgacgacga tcgcacggat      1080
     gccagcgatg atgagactgt gagaagcgac aacagcgaca gcgacgtcca gcaaatctgc      1140
     gccacgggtg aagaacatga caaggttact tgttacgtcg gaggtgtcaa acaggattgg      1200
     atagttgatt ctggagccca tgtaaacgtg attagtcgtg acacatggcg caacatcaag      1260
     agacaggggt gtaaagtcag ttgcagttac gaaggccgga agtttctgcg agtctacggg      1320
     aacggcaaac tcagagtgca caaaattatc aaagcggaca tcagtacgcg ttcaaaaaca      1380
     gttcatcatg atgtttatgt cgtcgacaat gagaaaggcg ccaatctcct ttccaagcga      1440
     acgtcgatgg acctgggaat attgaaaatt gaaggtgaag ttttcagcgt cgcgaaggag      1500
     gaagaaccac ctgttggaaa agtgaagggt ttgcaggtag atgtaaaaat cgaccccaaa      1560
     gtgcttccag tacaacagcc agctcgacgc ctgccgattc cattggaaga gctagttgag      1620
     tgtaaattgc aggacttact tcgacaggac atcatcgagc cagctccact gaaaatctcc      1680
     tgggcgtccc cgttggtggt aactccgaag gatggaggca gaagtgtccg tttgtgcgtt      1740
     gatatgagac gtgcaaatga agcgattatt ccagaacggc atccattacc caccttcgac      1800
     gaaataatgc cgcatctgga tggctgcaag tacttcagca aaatagatct ggttaaggcg      1860
     ttccatcaga tcgaacttgc tccatcgtca agggagatca ctactttcgt cacgccaaat      1920
     gcttattacc gttacaagcg gctcatgttt ggcatgaact gtgccgcaga aatctttcaa      1980
     cgggagatcg agcgaatctt gaaaggactg aatggcatta gagtgttcat tgatgacatt      2040
     ttagtttttg cgaaaacgcg aaaggaacat gaccgaaggg tgcaggcggt actggatcgg      2100
     ctcaaggaat atgggctaac ggtaaacatg gacaaaagta agattggaaa ggagttggtc      2160
     gatttcatgg gtcacactct atcggccagt ggtattttac cgatgaacga caaagttagc      2220
     gcaatccaag ccttccgtcg accagcgaat gtcaccgaga tgcgaagctt tcttggatta      2280
     gtgaactacg tcggtaagtt cattccaaac ctttcaagtc tatccgcacc gttgcgtcaa      2340
     atgacggtaa aaggattgcc attcacttgg acgaaagaag ggaaacgttc gtttgaaaca      2400
     attaaatctg ctttggtgaa acctgaacat ctgggctatt tcagcccaaa gaacccaacc      2460
     accttaatca ctgacgcgag taacaatggg cttggagcgg ttttgttaca aaacatcgtt      2520
     ggcaaaccga gggttattag ctacgccagc aaaagtttaa ccaagtctga aaaaaagtat      2580
     tcaacgctgg acaaggaggc tttggcgatc gcgtgggcta cagacagatt caaaatgtac      2640
     ctcacagggc tgcattttac catattgact gaccacaagc cactggtcaa catctttggt      2700
     cagacatcca tacctaacca gcgacaggag cgttgggttc tgaagatgca agcgtaccgt      2760
     tacaagatga agtacgttcc wggtaagata aacatagccg accctctatc tcggctatcc      2820
     gaagtccttg gcgggaaacc attcgacagg aactcagwag cagacctttg tgcgwttgta      2880
     gaggtgaata aaccagctgc aataacaatg aacgaaataa ttcaacgatc acaagaagac      2940
     gaagaactac aaggtgtcaa aactgctttg cacgatggaa aatgggaagg aagcatcaaa      3000
     aagtacgcac cattcagagg tgaactctgc ttcgcaaacg aaatcctcct acggaagaac      3060
     agaatagttg tgccacaaga tctccgagaa gtcatcttga cgctggctca cgttggtcac      3120
     cccggacgcg aaaaaatgaa gagaagatta agagtagctg tttggtggcc cggcatcgat      3180
     gctgctgtag agaaagtctg caaaacatgc ttcaactgtc aactcgttgc tcccttcgaa      3240
     aaaccagagc cgttgaggat cagggacctg ccaagtgcgc catggattca tctctctggt      3300
     gactttcttg gtccactacc ggacggtgct tatctttttg tgcttatcga tttatacagc      3360
     cgctacgttc tagcagaacc gatgaagcta acgacgtcaa aggaaatcat caagttcttg      3420
     gacgaaagct tcacccgaat ggggctaccg tacatcctga cgttcgacaa tgctagaaac      3480
     ttttctagtc aagaactgaa ggactactgt gtggacaagg gaataagact aacgcatact      3540
     acaccatact acccgagcgc aaacggagaa gtcgaacgcc aaaatcgttc gattttgaaa      3600
     gctttaaaaa tcagcaaaca gcaggggaca agctggaagg aagctttaca ggaatacctg      3660
     tatatgtatt cggtcactcc acactcggta actggtgttt caccagcaca attgatgttt      3720
     ggtcgtcgat tccgagattt gatcccacat cttcagatgg aattgtgcga tgatgaagag      3780
     atgcgtgatc gtgacagaat tattaagtac aacgctaagc agtacagaga cactaagatg      3840
     ggagctaaag agtcgcttat taaagtaggt gatgaagttt tgctcaaaaa tatgaacccg      3900
     caaaataagc tgtcgtcaaa cttcctacca acggcagcta aggtcataca gcgaaaagga      3960
     aacagcctta cagtggaaac agaaaatcga cagatctaca aaaggaacac atcccacgtc      4020
     aagccactgg tacggacaat ggaagaggat cagcaacggt tgacggaaaa cgatgatccc      4080
     aatgagactg ttaaacctgt tggagattcg atttcgcccc aaaaaccgga agcacagagg      4140
     cctcgtaggg aagtaagacg acctcaacat ctagatgact tccttctgta attaatcgtt      4200
     tttattcaca tcttttgaga tttcataaaa atgtttctaa cttcatcaaa gaatgagaga      4260
     ta                                                                     4262
//
ID   Gypsy-687_AA-LTR repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   27-DEC-2018 (Rel. 26.04, Created)
DT   27-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-687_;
KW   Gypsy-687_AA-I; Gypsy-687_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-110
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-110
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2102-2102 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 110 BP; 31 A; 16 C; 23 G; 40 T; 0 other;
     tgttgtgatt cattaacata aaatgtattt ggccgcactg gacctgaatg gaggatgatt        60
     attaaagtta tgttctccgg tacacgcgtg ttttatttac aatcgtaata                  110
//
ID   Gypsy-688_AA-I repbase;    DNA;    INV; 6716 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-688_;
KW   Gypsy-688_AA-I; Gypsy-688_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6716
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6716
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6716 BP; 2540 A; 1382 C; 1175 G; 1619 T; 0 other;
     ggcgcagtct aaaagtcgag tagtgaaaca aagtgtaagg tgtttttgaa gcggatattc        60
     aaatatcaca aaccacggag tttccaaagg aggatcaact ctaaatctaa cggcggatac       120
     ttggaagtcc agcagcagct gtttcagagc ggatatctgg aatttgcgac taccaggaga       180
     attgaccccg ctactcggaa ccttctccca tcggactcag acacaagcga cgcgaactcc       240
     aggatgcagt tactgatcct gtaagtaaaa ccttttctta aatcttaaag tgatagaaag       300
     aaatcatact caaataacca gtgctagtgt gtgaagttga ataagttcaa gagggcatat       360
     cttgtatttt ttgttcattt ccaagcgcta gtaacgttaa agtgcaaccc gagaagaaac       420
     atatcttgtt cgcggtcgaa acctcataat taaaccaaag tgaactcact ccggcaacgt       480
     aaaagccaca cgacgagaaa atcaagtgca actactaccg ttcctaacgg taccgcaaac       540
     gcgaaaaata aacgcgacac ccggtttcaa ttaaaccgag gcatcatgac ttctccagtc       600
     acagcagaaa ttactaaaga ccagctgatt gctcaaatta cagcactcac tgagaatcag       660
     aataacttaa ttcaaacaat tgcgtcatta gaacgcagag caaaagatcc attcctcaat       720
     tttgttacac cagatccaat taaaaatatc cccaatttta acgggaatcg caaagaaaca       780
     ttagcatgga tcgaggatac gcaacaaacg ctggatttat ttgaagatta cgaggacgaa       840
     cccacttaca agcaaattat gcgagtggtt cgttcaaaaa taattggtga agcaagagag       900
     gtattgattg cttcaggtaa tcctaaagaa tgggaggata ttaaagaagt actgctaaac       960
     tctttcggtg acaaaagaga tattacttcg catattcagt ccctatttta catcaaacaa      1020
     ggaaaactac cactcattga atattatcac aaagtaaaat caatagacac ggcaattaaa      1080
     tcgtcagctg cccagctaga tgattataaa agatctatgg aggcagtcaa caaattgatc      1140
     agtctaatgt ctttaacgag atacatagac gggctcaacg gagagcaaat ttcaatgtat      1200
     gttcgcagct acaggcccaa aactttggaa gaggcccacg acataacgac gcagcatttg      1260
     aatgccacgt tccgacaaaa aatggagaat agacagttcc ccagtttgtc aaaattacca      1320
     gaaattaaac cacagaacaa cacctctcac acaaaattca atcaacaaaa ttctcataat      1380
     aagtttaatg gttcaggaaa atttagacat aataaaccta accatgatga tgacgtatca      1440
     atgagaaccg ctaaatccag gctggatcag gtaaaccagc acgaagcaaa ccacaagcaa      1500
     aatgaggagg aatacgatcc cccatcgcat tcggacgagt cagtcaggaa agcagacgac      1560
     tctactttgg attcggatga cgacagttac tttgtggatg atgaactaaa ttttcaggtg      1620
     gtcgatgcac ccgaaataaa tcgatgaata ataattttgt gccgtatcta gtaattcata      1680
     caactaaagg caacttgaaa tttctagtgg acacaggtgc caataaaaat tacatttcgc      1740
     ctaaccacgt aaatgaagaa aactgcaaat ctgaaacagg cattcatgtt tcaaatatca      1800
     gagggaaaca taaaatcgag aaatcagcct ctttcgatgt atttcaaatt aaaaagaagg      1860
     tcaaatttta catttttcag tttcatgatt tttttgatgg gtcgattggt tatgaaacgt      1920
     tgagagatct caatgcacag ctgaatattg gaaaaaacac gcttaaaatt ggtagaaaga      1980
     cattcaaatt agagaagaaa ttttctcaaa atcacaaaat taacctcact gaacaagaat      2040
     atcaatttct tgatctaccg gtaaagagaa atggaagctt cctcgtcgaa gaagaaacaa      2100
     aatttgaaca tttttcgatt cttcctggtt tatatgaggg cagaaacgga acagccatga      2160
     tgtccatcag aaatcatagt ccgcaaacaa ctctacaaat taactgtaac gaaatcgaaa      2220
     ttggcaccga ttgcttccga ttgaaagaag taccaaaagt tacacaaatg gcacaagatt      2280
     cagaattcca ttttagagac gaacacctga acgatgagga gaaaagagcg ctcaaaacgg      2340
     ttattgatgc caataaagaa gtactctact ccgactcgaa aaaactaacc ttcacccaca      2400
     agatcaaaca caacatcaga acctcagaca atattccgat acatacaaaa tcttacaagt      2460
     acccccaaat ctttgaaacg gaagttcagc aacaggtcaa aaagatgctt aatgacggga      2520
     taataaaaga atctatttcg ccatacacct ctcccatatg ggtcgtcccc aaaaagagcg      2580
     atgcctctgg gaagaaaaag tttcgattag ttatcgatta tcgaaagcta aacgaaaaaa      2640
     ctataagcga taaatatccc atccctgaaa taactgatat tctcgataaa cttggaaaaa      2700
     catgctattt ttctacgatc gatttggtat ctggatttca ccaaatccaa ctcgccgacg      2760
     aagatacgga aaaaacagca ttctcagtta gttcgggaaa gtatgaattc acacgaatgc      2820
     cattcgggct gaaaaatgca cccgcaactt ttcagcgcgt aatggactgt atcttaagag      2880
     agtttttggg aaaatgctgc ctcgtctata tggacgatat tatcgttttt tcaagctcac      2940
     tcgaagaaca taaaaaagac ctcatgaaaa tactgaatag actaaaagaa gccaacctaa      3000
     aaatacagtt ggataagtgt gagttcttca gaaaagaagt acaatatctt ggacacaccg      3060
     tttccgaaga gggtgtcaaa ccaaatacag acaaaattga aattataaaa aaatggccca      3120
     tcccaaaaaa cgaaaaggaa atccgccaat ttctcggaac cttagggtac tatcgcaggt      3180
     tcatcaaaga ttttgcgaaa ttggtgaaac ctttaaccgg gctactccgc aaagaagcag      3240
     atttcaacat cactcccgaa atagcgaaat gcttcgaaaa atgtaaaaca ctccttacgg      3300
     tagatcccat actcatcttt cccgatttct caaaagagtt tattctgact actgatgcca      3360
     gcgactatgc cattggtgca gttctctcgc agggaccagt aggcaaagat cgcccaatag      3420
     cgtacgcctc cagaatactt aacagcactg aagaaaatta ttccacgtta gaaaaagaat      3480
     ttctggcaat tgtctgggcc gtaaaacatt ttcgtccata tctttatggg aggaaattca      3540
     agcttttcac ggaccaccaa ccacttacct attctatgtc tgatgccaat aaaagggttg      3600
     ttagaggaaa ggttgcttta gaagaattcg actatgagct catctacaaa cccggaagcc      3660
     aaaacacagt agcagacgca ctttcaagaa taaaaccgga tcaacttaac gccaatgaac      3720
     aggcagaagc tgaagaacga tcatcggaaa gcgacagcga tttagaaaca gtccactctg      3780
     cagatacaag cgacgatttc tttatttggt gcactgaaag acctattaat tggttcaaaa      3840
     ctcaattgat ttttaaatta tgccaaatcg actcaatagc ttacgaggag atatttccaa      3900
     aatatcaccg gtttacattt atgaagccta attttacgga aacagacatc gtagaaatat      3960
     ttaaaggata tcttaatccc cgaggcattt cttgtttaaa aataccaatt cccttggtac      4020
     aactggtaca agaaacatat cggaaacatt tctctaataa caaattcaaa gttttcgttt      4080
     cagagaaaat attggaagac gtcagactag aggaacagaa agatgctatc ataagagaca      4140
     ctcacgaagc agcacaccga gggataaaag aaaacaaaat gcaaatttca caaaattatt      4200
     tctttccaga aatcgaacga aaattaaaaa tgctcataag ctcctgtcac atttgtaaga      4260
     aaagcaaata tgacaggaaa cccccaaaat taatccagaa atcaattttc ggctctaaac      4320
     aatttgaacg ggtacacatt gacatttttt tcatggaagg tcaaaagtgg ttaacaatcg      4380
     tagactcatt ttctaaattt gcaaatacca ttccactaca gactagaact atcgtcgatt      4440
     tgaaacacgc tttttcggaa cacatcagac acttcggtag accacaaacg atagtttgcg      4500
     atcaagaacc cgggttcaaa tcaatcgatt ttgtcggatt tcttaacgaa ctaggcattg      4560
     aaattcattt tgctagcaat tcagcctcta atggaatagt ggagagattc cactcaactt      4620
     tgattgagct ttacaggact ctcaaatcaa aatataaaga actccccatt aacgaccgaa      4680
     ttaacatcat tacagacatt tataacaata catttcactc tgtaacaaaa cgaaaaccgc      4740
     gcgaattaat atttaataca ttaaacatta ctgacgccgc ggatctaatc gaacaatcca      4800
     ataaaatcca taccgcagtt aaactggaac tagataaacg taagcaaatt tacgaacaaa      4860
     aacacgaaaa ccgtgaacaa cctacggcaa ttaatccaaa cgaatccaaa tacataaaaa      4920
     tatctcaaag gttaactaaa gacaaagatg tttataaaat aactacagtc caagaagaca      4980
     accatttaac tttcaaagat acgaacggag tcaaagttca taaaaatcgc attaaaaatt      5040
     aattaaatac ttaaatgcaa atttgcaggt aaaacttaaa ataataaacc actacatttt      5100
     cttctcttgc agactaatcc tcatcaaagc aataaatacc actatttata aggaaatacc      5160
     taacagtaac ggactggttg catttaagtt gaaatccaca agaatcaaga tcggatacaa      5220
     caggatgata cataaagcga accttaattc aatagaaaat agtataggaa acatagaaaa      5280
     aattacaagg tcatttaaaa ctatcgaaca cttagagcaa acacttttag ataaaacgaa      5340
     aatagctaaa gataaactca atagtctcat cccccatagg gccaaaagag gtctaatgaa      5400
     cgcattaggt acagctatca aatttgttgc aggaaacccc gataatgacg atcttgagat      5460
     cttacaacaa agcttaggag tattgcaaac tcaggagaat aaacttgtaa acaatcaagg      5520
     aagacaaatt caaataaacg aacttttcca gaacaaactc aataacatta ctaattcaat      5580
     caggaaaatt agctcaaaaa tatcaagcga acacaataca gttcaaggaa tgagatcagg      5640
     attagaattc gtaaacctca tttggaacat agacagaatt atccacatac tagaagacat      5700
     agaagaacaa atagatttct caagagtagg attagtgaac aaaaatattc tctcattaga      5760
     agaaaaacaa ttaatagcag ataggctcag gaaacaaaac ttaaatttga aatttttaga      5820
     tgagattttt cagtatactt cagcaagcat cgccatcaac aacgacgaag cagttctact      5880
     tgtgaaaacc ccgattttgg atcgaaggac gttcgactta ctggaaatcc atactttgaa      5940
     aatcaacaac acacgtatcg acacatacgt caacctggtc gcgaaacatg gcagcacgat      6000
     atattatcaa ccaacaaggt gcgacatctg tgacaatact aatctaatcg aagatgactg      6060
     catctataac atactgaacc atcaaacacc cacatgcccg atgacgaaag caagacaagt      6120
     aacccaagtc aaggaagtca cgcagggaat catcctactc gacaccaacg aaaatataga      6180
     agtgaaggat tcttgcggaa actcgaggtt ggtaagcgaa gctacaatag ttgaagttca      6240
     aaattgcacc gtcaaaatac gcaattacac attccacgga caacccgaca taacacatca      6300
     agaagagtat cttattccaa tatacagtaa acctctccag gcaggaaact tcacaaatct      6360
     agatgatgaa aaccccatgc tacagtttca aaaccttgaa aaactaaagg aggtccaatt      6420
     atctctgaac catctacggc atggagtaac atttggaggg gccaccttcg tggcgatgac      6480
     attcctttgt ctctttttcg tttatctcta caagcaaatc aggccaacgg tggacaagaa      6540
     agcagtcgaa ttcctgccgg aactccttac agctacaaga gtggacgaca agacagacaa      6600
     cgaaagcatc tcgtcaatta acaccagcca tgagaagaca gatcgaatta ccaaaccaac      6660
     gctgaggatc gagctgccag aacatcaaac gaggacgctt gaaactcagg ggggag          6716
//
ID   Gypsy-688_AA-LTR repbase;    DNA;    INV; 383 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-688_;
KW   Gypsy-688_AA-I; Gypsy-688_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-383
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-383
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2103-2103 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 383 BP; 124 A; 94 C; 89 G; 76 T; 0 other;
     acgttacacg tggaactccc tggtaacacg caagctacaa catcgacgcc caacaacgtg        60
     gacgacgacg ctcaccgagg aagacgccgg cggcaggcca acatgccaca tcgatcaacc       120
     gccgcgatcg atgaaccaca gaagtgatga cacaaacaga accagcatag caacagccag       180
     gaagaccagc gactcgaccc cagacgtcca gcaacgtgga cgccgatgcc gatgcgatgg       240
     atttatgctg attaattaaa ttgtaatcaa taaaagggac agtgagggaa attcaggttc       300
     agttcgtatt gtaacagtgt agagtagcga ttaattgaat aaatgttttt ttttatctga       360
     atgtcaacga acattccatt act                                               383
//
ID   Gypsy-689_AA-I repbase;    DNA;    INV; 6677 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-689_;
KW   Gypsy-689_AA-I; Gypsy-689_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6677
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6677
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2056-2056 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6677 BP; 2550 A; 1371 C; 1178 G; 1578 T; 0 other;
     ggcgcagtct cggaaagtgc aagtggtaat taagtgcaaa aacctgaaat cttctgactt        60
     agtgaatata aggacagtga ttctagtgac cgcgcgaaaa ctctcttagc aaagttcatc       120
     gtgaacaact ggaagtgtcg ggaaaccatc ggtgagggga tatcacacga tttgaataca       180
     tccagagcga agtgaggacc acgcacgaac ctacaacctt tatctcaaca cacgcttgga       240
     ctccaggagg atgctgctaa tcctactgta agtagacacc aacacggtat ttttttttct       300
     ttcaaaaact aagtgctaaa agtgatctaa gtggaaccat tgagagtgag agggaatatc       360
     gaactcgaac attgttcttt tctaattgat cctaaagtgc gcgaatcaaa ccctcgcgat       420
     aacaaagtta aacccccgcg aacaaatata gcataattgc gcgcggtaga aacgaataaa       480
     gtgacctacg ggagaagtac aaaaacaaac gacaaattat aatcacacgc tttgaaaccc       540
     ggtctaagac gacagggagt gtaagcaaaa gaatcgtatt tcgctcgcgt gtaaatttaa       600
     caaaaccaaa cacgccatgt ccgagccatc cgctcaagtt caagttacag agattacacc       660
     tgaacagctg atacaacaag tcgctcagct gactaatact caagcgagcc taattgcgac       720
     aattaatgct ttacaagaca aggcaaaaaa cccatttaca aatttctata ttcccgatca       780
     aataaagatc atcccccaat tcagtggaaa ccgaaaagaa gctctagctt ggatcgagga       840
     cactcaggag gcgatcgatc agtttgagga gtatgaactc gagcctgagt ataaacaaat       900
     cattagggta attaaatcca aaatagtggg cgaagcaaga gaagtgctta tagcttccgg       960
     aaacccatcg gagtggatcg aaataaaaga gattctactc aatgcatttg gcgataagcg      1020
     agacataacg tctcatatcc aatcgctatt ttacgtaagg cagggaaaga aaactcttca      1080
     agaatatttc caaaaggtta aagccatcga cacggctatt aaaacaacag ccgcgcagat      1140
     ggaggactac aaaaggtcca cagaagcagt aaataaacta attagcctga tgacccttac      1200
     aaggtacatc gacgggctaa atggggaaaa cttagcaatg tacgttagga gttatagacc      1260
     aaaatccttg gaggaagccc atgaaatcac aattgcccat tcaaacgctt ccttcaggca      1320
     gaaaatggaa aatagacaag cttcttctag ctcttctgga gcaaatgtcc acccaaaatt      1380
     ccaaaacaag tatgagaaca ccagaaacca aaattccaat aactctcaaa attcaggacc      1440
     acagaaagca aactctggaa ggtacaaaag gaacaacgat gaagacgtgt ctatgaaaac      1500
     acacatttca aaaatgcaga tcaataacaa cgaagggaaa agggataaat attcggaaga      1560
     atcagacgaa gaggaaaacc aaaacgacac atgcaaacta gagtccgacg aggatgagta      1620
     tttcgtagga gatgagataa attttcaaat agccggacgc ggagaaacaa agagctaaat      1680
     aattttattc cgtacataac cattccgacc acaaagggcg aaatgaaatt tttgatcgac      1740
     acaggtgcga acaaaaatta catatccccg gaacatgtca atttagaaaa cgcgaaaata      1800
     gaaaaaggcc ttaaggtaac caacataaac ggcacctttg caattaaaca ttctgtgtcg      1860
     ttcgacccgt ttttaataaa gaaaaaaata aaattctacg tttttaaatt ccatcaattt      1920
     tttgacggac taattgggta tgaatcatta cgtgatctaa atgctcaatt ggacattggg      1980
     aaaaacaaat taaaagtagg taggaaaact atcgaactga agaaacgatt ccccgaaaca      2040
     cagaaactta atcttaatga acaggaagtc cagtatatca agataaaaac ggtaaacgaa      2100
     ggagatttta ttgtaggaga ggagagaaac atgggaaact tttctatatt acctggtatt      2160
     tacaatagta aaaataacac tgcttttgta gccgtgaaaa atcacaacaa atctaatttg      2220
     gaaatcaacg tcaacgaaat ggctttcaaa aacaacgaat ttatagaaac tcaaggtcca      2280
     aaatatgtaa agaacaacaa atttaaaatt caagacgatt ctctgagcaa accggaaaaa      2340
     gaagagttag aaaaggtgat ctccgataat tcagaaattc tatatttcga agaggataaa      2400
     ttgtcattca ctcatcggat taaacataaa atcagaacag ttgacaatat cccaatccat      2460
     accaagtctt atcgctatcc acaaatattc gaaagtgagg tacaaaatca aatacaaaag      2520
     atgctgaagg acggtattat caaagaatcc atatcgcctt atacgtcacc tgtatgggta      2580
     gttcccaaaa aggctgacgc atctggacaa aaaaagtttc gactggtcat tgactaccgc      2640
     aaacttaatg aaaaaactat ttccgacaga tacccaatac ctgatatcac ggatatatta      2700
     gataaactcg gtagagcaac gtatttttct accatcgatc tagtatccgg attccatcaa      2760
     atccaactag ataaaaatga tttcgagaaa acggcttttt ctgtgagttc tgggaaatac      2820
     gaattcacta gaatgccatt tggtctcaag aacgcccctg cgacctttca aagggttatg      2880
     gacgccgttc ttcgggaatt cattggagta tgttgtctcg tatacatgga cgacataata      2940
     attttctcta gttcgttcga agagcacgtc aaggatatta ggaaaatact tcaaaagttg      3000
     aaagaagcgt gcctaaaaat acagttggac aaatgctatt tttttagacg ggaagttcaa      3060
     ttcttaggac ataccgttac cgaaaaggga gtcaagccga atagtgataa aattgaagtt      3120
     atcaaaaatt ggcctatccc gaaaaatgaa aaagaactta agcaatttct tggaactata      3180
     ggctattatc gccggttcat taaagacttt gctaaaatgg taaaacctct tacgcaatta      3240
     ctgcgaagtg atacagactt cactttcacc ccagagataa gacaatgttt cgataaatgc      3300
     aaatcccttt tgactatgga ccccattttg gcctaccctg actttggcaa agattttata      3360
     cttacaacag atgcaagcga ttttgccatc ggagctgtat tgtcccaagg acaaatcggt      3420
     aaagatcgcc ctatcgccta cgcatccagg acacttagta aaaccgaaga aaattactgc      3480
     accactgaga aagaactcct agccatcata tgggcagtaa aacacttccg cccctatctc      3540
     tacggacgac gtttcaaatt aattacagat catcagccat taatttactc catgactagc      3600
     gcgaacccaa aaattatacg atggaaacta gatttaagcg agtttgattt cgaaactatc      3660
     tataagcccg gaagagagaa tgtcgtcgca gatgccctct caaggcttaa accgacagat      3720
     ataaatgcta ataaccaaga tgacgttgaa gatgaacatg acaaggacga aagcgacgaa      3780
     aacaccgtac attcagccga cacaagcgat gaccattata tatggacaac ggaaaaacca      3840
     ataaactgtt tcaagaatca aattgtattc aaagtttccg cagtagacat tgaagcacac      3900
     gaagaagtat tcccaaaata ccataggttt acaatctcaa aacctgagta tacagaacgc      3960
     gacatcctta aaatcttcaa ggagaaactt aagccaaacg gcgtgaattg catctattgt      4020
     cctgtaccac tcacacagct tatacaagaa acatatcgta aacacctgtc tcataatgga      4080
     atctttaagc tttttatttc acaggttcta ctacaagatg tacggctacc agaagaccaa      4140
     gacgatatca ttcgtaaaat ccatgaatac gcccataggg gtatgaaaga aaataaagcc      4200
     caaatacttt cggattattt tttccctgag attgacaaaa aggtcaaaat attcataaat      4260
     aactgtccta cctgcaagaa atgcaagtat gacagaaaac ctacaaaatt aattcaaaaa      4320
     acaaacacaa ccggcaaacc tttcgaaaat atccacattg acatcttctt tatgagcgga      4380
     aagaaaatgt taaccgtggt ggacgctttt tcaaaattcg caaacgtaat tgctctaaac      4440
     gcaagaacaa tagttgattt gaaaagagca attacggagc atattagaat ttttggcaga      4500
     ccagagatca taacctgcga tcaggaacca gcgctcactt cgatcgaatt cattggattt      4560
     atgcaagatt tgaatataga gatgcaccat gctagttcca gcaacgcaaa tgggatagtc      4620
     gaaagattcc attcgacgtt gatcgaacta tacagggcgc tcaaccctaa atacaaagac      4680
     ctcgatttct atgacagaat taacattttc gtagacattt acaacaacac tatccattca      4740
     gcaacaggtt tcaaacctag agacgttatt ttcaatcacc aaaacaagac aaataccgaa      4800
     gaaattctcg aaaattacaa taaaatccaa tcagccatta aggttcaaat ggcaaaacga      4860
     cagaaacaaa tcgaaaacag taacaaaaat agaaccatac ccaaagattt agatcaagga      4920
     caaaacgttt atatcaaggt caatcaacga attacaaagg acaaagaccc atacaaaatt      4980
     tctagagtcc aggaaaataa cgagttgact tataaagact catacggagt gaaaattcac      5040
     aaaaacagaa ttaagatgta attttttggc ctcttttcag acttgtacaa ctgactacag      5100
     cgacgacata tcatgacgta tccacaaaga acgggctgat cactatatca ctagacacag      5160
     tgagaatcaa aacaggttac gaaagattga tacataaagt agacctagga gacatcaagc      5220
     ataatttaat ctacatagaa aacttagcga agacaattaa cacatcggac cacttggaac      5280
     aaactttata ttataaaatt caaaaagccc acgagaagct atcaggtttc tacccgaaaa      5340
     gatcaaaaag aggactcgtt aacgctcttg gtaaagtaat caaatttata gcaggaaatc      5400
     ctgaccaaga cgacttaaac ctgataaatc aagatattga actactagaa accagtaata      5460
     ataatattat caataatcaa ataaaacaaa taaaaattaa caatttgcta caaacgacaa      5520
     ttaacaaagt ttcaggtaca cttagatcta ttaaaagtca gcttcaattc caaaactcag      5580
     aatttaaaac agacttagaa tttatcaact taatacttaa catagacatt ttgatgaaaa      5640
     cattagaaga tcttgaagag caagtcacat tttcccgatc aaaccagctg aataaaaata      5700
     tccttagcgc aacagaaaaa aattacattt ggaattctct atcaaaacag catattccca      5760
     ttcaatatga agacgaaatt tacaaatttg ttcaatctat cgtttcactg caaaataacc      5820
     acattattat tattgtaaaa cttcccattg tcgagacaaa agagtacaga ttgatccagc      5880
     tagaaccagt caacgttaac gggaccagaa tcaacacgaa tatacgttat gtggccagcc      5940
     atcaacaaac gtttttccaa caaagagaga ggtgcttcat ctgcaataat aacgaaccag      6000
     tgaacgacga atgcatcttc aatattctaa caaatcataa agccaaatgc cctatgatca      6060
     aacagcccga agagccaata atcaaagaag tcaaccctgg gactatcctt gtcgacacac      6120
     acaaggcagt aaccatttgg gactcatgcg gagaatcaca gataatctca acaccaaccg      6180
     ttgtcgaagc aggtaattgt acgatcacag tgcgaaacct cacatttaaa ggtaatatca      6240
     aggtcgtgaa ccagcacaca tatctcacac ctatctttgg taaagaaata gaaaccatca      6300
     aacagaaagg agacagtgaa gatattcacc agctaaacct caacaatcta gaggaaatta      6360
     aacgacttaa actgcacatg atcagctctc agacaatcgg aggaatagcc atctcctcca      6420
     tcgtcttgtg tcttttttca attatctgta ttcgtagatt caaaaccaag gataagaagg      6480
     aaagcatcgt caccctacgc attaccgacg agaaacctac tatcaaccca caggaaaaca      6540
     acagacagga tacatcaacc acctttcaga aagatgaaac ctccctctcg ccaaaatctc      6600
     tattcccagt acccagattc gtcctgacga gaggatcaaa caagtcaacc gaggacgcct      6660
     gacagttaga ggggagg                                                     6677
//
ID   Gypsy-689_AA-LTR repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-689_;
KW   Gypsy-689_AA-I; Gypsy-689_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-300
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-300
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2104-2104 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 300 BP; 93 A; 68 C; 63 G; 76 T; 0 other;
     cgttatgagg acccctgccg ccatccaaca ttaacacatt cacctggcca catagcaaca        60
     tcaattacga tgcacgcgca tggacgaaac cgatgagcta cgcaagaatc caacggtgac       120
     gggaacgaag gtcgcacgga aaccacgcca ctcctggaat gcagaatcat cagttctact       180
     ccataaaaac catttgggaa tcaatgtgaa gtttagttct aagtgtgatg ttgtagatgt       240
     acgattactt ttatgaataa atgttttttt tatgttagct cggtgaaacg tagcataact       300
//
ID   Gypsy-68_AA-I repbase;    DNA;    INV; 7690 BP.
XX
AC   supercont1.280;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68_AA_;
KW   Gypsy-68_AA-LTR; Gypsy-68_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7690
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.280; Positions 1015611 1007922.
XX
CC   Positions [4761-5240] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..2364
FT                 /product="Gypsy-68_AA-I_1p"
FT                 /translation="MALYYFFASHLLNDEVDYELKLRNYGEECSKSLDSKR
FT                 RTLRRLVNQDKQENRDYRSMYSIDQEFDLISSRVNAIACALSQNVDAKLIS
FT                 RLGHYHSRALRSNAHSTEAKAMKDSLVKQISDLVALYRPKSPMIPSGGHEE
FT                 SSQEEDIDHEKAQNKLTGSEGQNDGSKLGLEIRKGKEIHNESGTNVGQSNL
FT                 ELKVQNLEAQMTEIMSMLQQVLAKQQQNGQGQKEPEATVQVNRTGAIPKTS
FT                 ATQMSNSGLQASPLEESRNRLHLGDNFVRNLGESRQNTAGTRLGQSHNQFM
FT                 GECYQGTNSLQHQGFPIQAPIRDGLPRAGFRTVNPPISPQYEVQGEQSMGN
FT                 TFVGQTRYFPGYGTWNENHRNEPFGSPSGSENFQRDCRMQYDRRIEKWNIY
FT                 FSGVSRSPTLEDFIYKVKVLASMNGIPRDILISHIHLLLRDEASNWFFTYY
FT                 EANWNWDEFETRIRYRFGNPNQDQGNRQQIYERKQLKGETFIAFVTEIERL
FT                 SKLLTNPLTAQRKFEIIWENMRQHYRSKLACFQINNLDQLIQMNYRIDASD
FT                 PSLHPVGQKQGVNNIEVDSEGEPSEDEEINELSRQYQRGQGVPRHQDGTRE
FT                 RTNEAARVPLCWNCRKNGHFWRECREAKTTFCYVCGNPGRISTTCESHPKR
FT                 DSARGVAGSQNSGN"
FT   CDS           2784..5624
FT                 /product="Gypsy-68_AA-I_2p"
FT                 /translation="MIQNGTNFEEVALIQPTPMDTERVESLHFFIHPIENL
FT                 PNLEKTDPDDSLDIPGLELPEPSRATPESIETEHVLTPEERSQLTEVVREF
FT                 PCTNENRLGRTTLIQHEIVLRDEAKPRRQPLYRCSPSIQAEMEKEIERYKK
FT                 LDAIEECSSEWANPLVPVRKSNGKIRVCLDSRRINALTKKDSYPMRDMKGI
FT                 FHRLENAKYFSVIDLKDAYFQIPLKEECRDLTAFRTSQGLFRFKVCPFGLT
FT                 NAPFTMCRLMDKVIGFDLEPHVFVYLDDIVVATKTLSEHLRLLRIVANRLR
FT                 LANLTISLDKSRFCRKRVNYLGYLLTDEGIAIDNSRIEPIMNYARPKSVKD
FT                 IRRLLGLAGFYQRFIHGYCRIVAPISDLLRKGQKKFVWTEAAEESFQELKA
FT                 ALVSAPILANPDFRLPFVIESDASDNAVGAALIQHIDGEQRVIAYFSKKLS
FT                 STQKKYASVEKECLGVLLAIEHFRHFVEGSKFKVVTDARSLLWLFTIGVES
FT                 GNSKLLRWALKIQSYDIELEYRKGKQNIIADCLSRSIEVVSLASLDQEYQD
FT                 LIEQITKSPQNYRDFKVVDEQVYKFVKRQDSLEDTRFCWKRYPRRDDRVQI
FT                 VREIHEKAHFGFLKTLAAVREKYFWPLMSTQIKSFCQKCVKCQASKASNIN
FT                 TTAPLNVQRKIAEYPWQFITMDYVGPLPASGRGRNTCLLVITDVFSKFVLI
FT                 QPFRQATAESLVPFVESMVFQLFGVPEVVLTDNGSQFVSKPFQELLATYHV
FT                 THWKTPSYHPQINDSERVNRVLTTAIRATIKKDHKEWSNNIQIIANAIRNS
FT                 VHEATKYTPYFVMFGRNMISDGREYRHLRDTSAENGNMGSEDREKLYSEIR
FT                 ENIRKAFEKHSKYYNLRSNANCPRYTIGEKVLKRNTELSDKGKGYCAKLAP
FT                 KYVPAMIKRVVGEHCYELEDEKGKRIGIFNCKFLKKFSLPTSN"
XX
SQ   Sequence 7690 BP; 2397 A; 1438 C; 1739 G; 2116 T; 0 other;
     tatttggcgc ccaacgtaaa atttatcgtt atacttattc aatgtatttg taatgttgag        60
     aaaatattca attctgtttt ataagtgtaa agttcatgtt aatattagtt ttctgtgctt       120
     ggttatgaaa atttagtttg agttaaggtt gatttcggat atttgtgaat caaggcttct       180
     tgtcgggaat ttattaagga aaattgcaaa ttacagttac ttttaaagta aaatttacgt       240
     ttatatctca tatctgttgt attttttttc gtcgcttgta gtgttttgtg gggtgttcta       300
     attattacat ttcttttcta gttatatttt gacatacctt gttctatctt ctctgttttt       360
     tttttttttt tcaaaatggc tttatattat ttctttgcgt cgcatttatt gaatgatgag       420
     gtagactacg agctcaaact tagaaattat ggggaagagt gtagcaaaag cttagattcc       480
     aaacgaagaa cgttgagaag gctagtcaat caagataagc aggaaaatag agactatcgt       540
     tcaatgtatt ctatcgatca ggaatttgat ctaatttctt ctagagtaaa cgcaatagct       600
     tgtgctttgt cccagaatgt tgatgcgaaa ttaatctcac gcctgggaca ctatcattca       660
     agagcgctgc gtagtaatgc tcactcgact gaggcaaaag cgatgaagga ttcgttggtt       720
     aaacaaattt ctgatttggt ggctttatac agacccaaaa gcccaatgat accgtcaggt       780
     ggacacgaag aatcctcaca ggaggaagat atcgaccatg agaaggctca gaataaatta       840
     actggttcag agggccaaaa tgatgggagt aagttaggct tagaaatacg caaaggaaag       900
     gaaatacata atgaaagtgg aacaaacgtg ggccaaagta acttggagtt aaaagtgcaa       960
     aacttagagg cacaaatgac agaaattatg tcgatgttgc agcaggtgtt agcgaaacaa      1020
     caacagaatg gtcaaggtca aaaggaacca gaagctacag tacaagtaaa tagaacaggg      1080
     gccattccga aaacttctgc aactcagatg tctaattcgg gtttgcaagc atcaccattg      1140
     gaagaatcta gaaatagatt gcacctcgga gacaactttg ttaggaactt gggagaaagt      1200
     cgacagaaca ctgccggaac cagattagga cagagtcaca accagtttat gggagaatgt      1260
     tatcaaggca caaattctct tcaacatcag gggtttccaa tacaggcacc cattcgtgac      1320
     ggtttaccgc gggcaggatt tcgaacagtc aatccgccaa taagtccgca atatgaagta      1380
     cagggggaac aatctatggg caatacgttt gtaggtcaaa caagatattt tccagggtat      1440
     ggtacatgga atgaaaatca ccggaatgaa ccgtttggaa gcccaagtgg cagtgaaaat      1500
     tttcagaggg actgtcgtat gcagtacgat agaaggatcg aaaaatggaa catttatttc      1560
     tcaggagttt cacgatcgcc cactttggaa gacttcattt ataaggtcaa ggtattagca      1620
     agcatgaacg gcattcctag ggatatcctg ataagccaca ttcatttgtt actacgagac      1680
     gaggcttcca actggttttt tacctactat gaagcaaact ggaattggga cgagttcgaa      1740
     accagaataa ggtataggtt tgggaatcct aaccaagatc agggaaatcg acaacagatc      1800
     tacgagagaa agcaactgaa aggagaaacc ttcattgctt ttgtaacgga gattgaaaga      1860
     ctgagtaaat tacttacgaa cccactaaca gctcagcgaa agttcgagat tatctgggag      1920
     aatatgcgcc agcattatcg gtcgaagtta gcatgttttc agataaacaa tctagaccaa      1980
     ttaatacaaa tgaactaccg aattgatgcc agcgacccga gtttacatcc ggtcggtcag      2040
     aagcagggag taaacaacat tgaggtagac tccgagggag aaccatcaga ggatgaagag      2100
     atcaacgagc tgagcagaca gtatcaacga ggccaaggtg tcccaagaca tcaagatgga      2160
     acaagagagc gcacaaacga ggcagcaaga gtaccgctct gctggaactg ccgcaagaac      2220
     ggacacttct ggagagagtg cagggaggct aagacaactt tctgctacgt ttgtgggaat      2280
     ccaggcagaa tatcaaccac atgtgaaagt catccgaaac gtgattcagc gcgtggggtg      2340
     gcgggttcac aaaattcggg aaactgaatg tggagtgcgt agttggggac cttagcattc      2400
     ctggggagtc ctctgttccc atccaatcga aactgtatat tgatccgttc aatagccttc      2460
     ttgaagtgaa aatccaaact aatcaatgcc ctcaggtaaa agtggccata tttggagtag      2520
     aaattgatgc ccttctcgat tctggggccg gtatcagtgt tgccaattcc agtgatctga      2580
     ttgatcgtca tggactaaaa ctgttaccgt cgccaatcaa aatttgcacg gctgataaga      2640
     cacaatattc ttgtactggt tatgtgaacg ttcccatcca gttcaaaggt gtgaccagag      2700
     tggttgctct tgtaatcgtg cctgagatct ccaggcagct tatactagga atcaattttt      2760
     ggagggcgtt caacattaaa ccaatgatac agaatggtac gaatttcgaa gaagtagctc      2820
     ttattcaacc aacgccgatg gataccgagc gagtggaatc tctacatttc tttattcacc      2880
     caattgaaaa tttaccaaat ctcgagaaaa cggaccccga tgactctttg gacattccag      2940
     gtttggaatt accggaacca tctcgagcta caccagaatc gattgagact gaacacgtgt      3000
     taacgccgga ggaaaggtca cagttaacgg aagtagtgag ggagtttcct tgcactaatg      3060
     aaaacaggtt aggacgaact acattgatac agcatgagat cgtactacgc gatgaggcaa      3120
     agcctagaag acaacctttg tatcgatgct ctccctccat tcaagcggaa atggaaaaag      3180
     agatcgagcg atacaagaag ctagatgcta ttgaggagtg ttcgagtgaa tgggcgaatc      3240
     ctttggttcc cgttcggaaa tcaaacggga agatcagagt atgcctggac tcaagacgca      3300
     tcaacgcact aactaagaag gattcgtatc caatgaggga tatgaaagga atattccatc      3360
     gcctcgaaaa cgccaagtac ttttcagtga tcgatttaaa agatgcttat tttcagatcc      3420
     cgctcaagga agaatgtcga gatctgactg catttagaac atcgcaggga ttatttagat      3480
     ttaaggtgtg ccctttcggt ctcacgaatg caccgtttac aatgtgccgc cttatggaca      3540
     aggttattgg cttcgatttg gagcctcacg tattcgtata tttagacgac atcgtggtgg      3600
     ccaccaaaac tttgtcggag cacttgcgtc tactacgaat cgtggcaaac cgtttgaggc      3660
     tggcaaacct tacaatctcg ttggacaaat cgcggttttg cagaaaacga gtgaactact      3720
     tgggatattt actgaccgat gaaggtattg caatcgacaa ttctcgaatc gaaccgataa      3780
     tgaactacgc gagacctaag agcgtcaagg atattaggcg cttgttagga ttggctggat      3840
     tctatcagcg atttattcat ggttactgta ggattgtcgc gcctatctcc gatctgttga      3900
     ggaaagggca gaagaaattt gtatggacgg aagcagcaga ggagtccttc caggagctca      3960
     aagcggcatt ggtgtcggca cccatattgg ccaacccaga ttttcgttta cctttcgtta      4020
     tagaatcaga tgcgtctgat aacgcggttg gagcagcatt aatacagcac atcgatgggg      4080
     aacagcgagt cattgcttat tttagcaaga aattaagcag cactcaaaag aaatatgcga      4140
     gtgttgaaaa agagtgcttg ggagttctct tagcgatcga gcatttccga cactttgtgg      4200
     agggcagcaa gttcaaagtt gtaaccgacg caagaagctt gctgtggttg ttcacgatcg      4260
     gagtcgagtc aggaaattcc aaactccttc ggtgggcact caaaatccaa tcatacgaca      4320
     ttgaattgga gtacaggaaa ggtaaacaga atataatagc ggactgtctt tcacgctcaa      4380
     tagaggtcgt ttctttggca tcacttgacc aagaatatca agatttgata gaacagatta      4440
     ccaaaagccc acaaaactac agggacttca aggttgtcga cgaacaagtg tacaaatttg      4500
     ttaaaagaca ggattcgttg gaagatacgc gcttctgttg gaagcgatat cctcgaagag      4560
     acgatcgagt acaaatcgtt cgcgaaatcc atgaaaaagc ccactttggg tttttgaaga      4620
     ctctagcagc tgtgcgggag aaatattttt ggccgttgat gagcacacaa atcaagagtt      4680
     tctgccagaa atgtgtaaaa tgtcaagcca gcaaagcgtc gaatataaat acgactgcgc      4740
     cattaaatgt tcaacggaaa attgcggaat acccctggca attcataacg atggattatg      4800
     taggaccttt gccagcttct gggagaggaa gaaacacttg tctgctagtg atcactgatg      4860
     ttttcagtaa atttgtgctg atacagccct tcaggcaagc gaccgctgaa tcactagtac      4920
     cgtttgtgga aagtatggtt ttccaacttt tcggggtccc ggaggtggtc ttgacggata      4980
     acggatctca attcgtatct aaaccgtttc aggaattgct agccacgtac catgtaaccc      5040
     actggaaaac tcctagttac catccacaga ttaacgattc cgaacgagta aatcgtgtat      5100
     taacaaccgc cataagagca acgatcaaga aagatcataa agagtggtcc aacaatattc      5160
     agattatagc caacgcaatc cgaaattcgg tccacgaagc cacgaagtac acgccatact      5220
     ttgtgatgtt tggccgtaac atgatatcag acgggaggga gtatagacac ctgagggata      5280
     cctcagctga gaatggaaat atggggagtg aggatcgaga aaaactgtac tctgaaatcc      5340
     gtgaaaacat aagaaaggcg tttgaaaagc actcaaaata ttacaattta aggtcaaatg      5400
     caaactgccc taggtatacg attggagaaa aggtcttgaa gcgaaatacg gaactgtcgg      5460
     acaagggaaa agggtactgt gccaagctgg ccccaaaata cgtccctgct atgattaaac      5520
     gagtcgtggg agagcattgc tatgagttag aggatgaaaa agggaaaagg attggcattt      5580
     tcaactgcaa attcctcaaa aagttctctt tgccaacctc taattaggta aactgctatt      5640
     tttcaagcta tgaaacctat ttattaggtt acaaaacgtc taagggcgtg ttaaaataca      5700
     taagtggcaa aaactttaac ttgctcgatg ataatctata ataatgcatt tattcatcag      5760
     ctatgtattc atttaatgga aactacgcac tctatgagtt gctcaaaaat caacaaagtt      5820
     gcattttgca ttggtctcct cattatcgag tcgagctttc attgatcaag ctatgtatat      5880
     ttaaaaagtg gacaaagcaa ctttcaaaca agttgcacaa aattgtagcc tgccattcat      5940
     aaggtgctcc tcggatttcc gagttgagca gtcccacaac aacatgattc attactggag      6000
     acaagcctta tgaatgagcg cggatcacta ttctcacttc aatgacgatt ccattcactt      6060
     tcataatccc tacacgacag ctatgaatct caacctgagt aacaatgtac gaaaaacact      6120
     ggcgaggaaa cgaagcaata ggtgaagagt cgtgtctacc ttccctgagc tacctgtact      6180
     tataattagt tatcctaagt taccttaaac tagattaacg tttctcttaa tatcactata      6240
     gttacgtttc gtcgatgatc tgtcgtattc agtcgtctgc gtcaaagtgt acatattagt      6300
     tttcgtccat caagtagatg tagtttccaa taagatatcc gtgatcttca aaaactttgg      6360
     tcgtggccgt cctgtgattg tatgccattg atacatggat tcattcatgt tgtagataat      6420
     cgttgaatac tcattgatgt ttcctcataa gttgccagtg tacatatagg ttaagatacc      6480
     atagatcagt ccgagagttc cgcagtgctt cggtagtaag ccaccaataa gaaataattt      6540
     ccaataagaa ttcatcaatt gccgcagcat actgcattgc catgtgtaac aaaatcccac      6600
     gtcgcggcac ctgcagagag aaaccacaaa gcaataagtt ctttgcagaa gagcaagtaa      6660
     ttaatactcc ccccgtaaaa caactccagt tgaagccgat gccaatagtt tttgccattt      6720
     tgtaatgaaa tagcctgcaa cctgcctgga actggaattc cagcgcgcac gattaaagct      6780
     acggactctt tcagctcaca gtgttcctat ttttcgttga cagttgatga gaatgggttt      6840
     ccggtgtttg acagtttgat ggctgcgtac gtgttaggtg gattcagtac ttgggtgtga      6900
     agattattgt gaagggcagt agaacagttg agggatttta atttcggtgc ttttttgagt      6960
     ttcgggtgac cagaacaaga ttctggtgtg gaaactcaac taagtcttag gtttaggtta      7020
     cgttttgtga gatgaatgga catattgcct aaggttaatc tttggggtga gccagatctc      7080
     cacaaaatag attattgcgg taaattcggt aaagacttct atactcagcg taatgattga      7140
     ggttgttgtc gaatctgaat gagcctgtat tcaggatatt tgatgatttt atgagtggta      7200
     tttttccgga ttcatctgaa tctgccaaaa gtacagttga attaagttgt gagagatttt      7260
     ttttaagttt gtaaggattg agtacaccta acacgttgca ttatcaagct agttgaacat      7320
     tttttatgca tttttttttt cgttgataag tagccttgta aatatgaatt cacaatcaaa      7380
     atttaaagat aaattataga taaaaataat tagttgacag atttactaga gaagctaaga      7440
     attcgctgga gaccggagtc attgacgctg atggtcagta gcaggtacga tctgtgatgg      7500
     atctgtattt tggaaatagg gaaggagtca acttttagtt gatgatgaaa tcatatgacc      7560
     ccgaattcat cagcctctaa gtaaataatg tttattaatt ccattttgta aatagtagca      7620
     gtaagaaaac ccttacgaaa atttagttga aggaattcaa ctaaattttc gtaaccttag      7680
     catggagtga                                                             7690
//
ID   Gypsy-68_AA-LTR repbase;    DNA;    INV; 1719 BP.
XX
AC   supercont1.280;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68_AA_;
KW   Gypsy-68_AA-I; Gypsy-68_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1719
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.280; Positions 1007921 1006203.
XX
SQ   Sequence 1719 BP; 450 A; 352 C; 428 G; 489 T; 0 other;
     tgtaacggta gccctttttg ttatttgttt atttgttaat tgtttattta tttattgctg        60
     ttctattaaa agttatgtaa ttatattgga attcatttaa tttaattatt catttaactt       120
     aattatcatc taaagttaca tggacattat aataaccgaa atgaaacgaa caatattcag       180
     aattgcatgc aacttttcta tgcgtagaga ggttaaccgc tacgcagcgt agatgcgagc       240
     gctgtaacga gaatcacttt tcgtgttctc gttatttggc tagggaaccc cgaagtagtt       300
     ggcttttgaa tgctcggctt tacaacggca tgaaatgggt agacaatcca aaaacgaagg       360
     agatttctat aactacagtt gcacgaacat gattaacgga gaccgttgag cttccgtttc       420
     ctggagccat accaaagggt cctatctgag gagtcacaga gattgtctcg ttcactttgt       480
     cccagatcgt ggcagaagaa ggatcgcgaa gcagtgtagt ttccgtggtg ttgtaattgt       540
     aagttattaa aacgtgaggt gtactttgtc ccgtattaat tgtctaaccg tatccccgtg       600
     taggcttttg taagatagct agttgtgcgg tgagagattg tgcgagtgaa cttcggtcag       660
     cgagttcaaa ggtaaatgac ttcttatgtg tgtcctatat gtgctaatcg tgtcgccaaa       720
     gccaagcgtg agctacggct ttctcgccct aaaaatagaa aaccgcacgt acatcgcaca       780
     aaaaggagaa cgagaagctt gctccgcacc accttgcgtc gcgcatccat ctgcgttctg       840
     gcgccaaagt ccgcccggcg cctcgaagcc ggaagggagt agcgaccgtc accaacgcac       900
     tccaagcgca tttccgtcaa tcaagcttcg gaagttggat cacgagcccg agaagtgcct       960
     gtgaacctcg tgagcagccg tgaaagtcgt cgaagcgtca gcatcccttg agcgaccatc      1020
     ggcatccagt cgacgtcatc gatagcgtca tcgtcgacgt agtaagatac aaaccgtgag      1080
     tacgttccac gaaaccttgc atgcaagagt gttagcacgg acacagagaa gttgagttag      1140
     aaatccgcac aagttagggc cagaagttca aaggggattg tagaagaaag gccgtcggcg      1200
     tgaccgatat ggaaacctag gttatcaaat tatagttcaa atatacgtcc tacagaaagt      1260
     ccttgtgtta atggaaattt cgtgctagtt agtatggtta agaaagttca aagtcctttt      1320
     cacgtttcgc tggtcctggt tagttcccgt tgtctgttga ataatccgtc ttctaaaacg      1380
     gaatgggctt gagtgggtgc gatatctctg ccagtgatga tacataggat taggtcgagt      1440
     tttgggagtt cggtttgttt ggtggaatct tttggttatg ttcgtgtggg ctttagttgt      1500
     cgaaatagga gattccttcg aggcaaattt ggataacgag tctgcttact tgttctcgcg      1560
     tattgttgag catttgggag ctgactcttc ggtcagtatc tagccgggca acatagaaca      1620
     cgacgggtgg tcctcctagg aggtggcgca taagtcactc gtttaagaaa ccagtccgga      1680
     atcaggtagc agactcctag ccgccctatg gccgctaca                             1719
//
ID   Gypsy-68_AnFu-I repbase;    DNA;    INV; 4069 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-68_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4069
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2952-2952 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..4039
FT                 /product="Gypsy-68_AnFu-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="MESGPDRMQLKPLDCTNLAREWPKWKQRFNIYMVAKN
FT                 KQGDTEKNKIAMFLWWIGDHGMEIYNTLFPSNGDMQKMFGETTEKKSTDKI
FT                 ETKERTLSDVINAFDAYCLPRKNLAVEAFKFNLMSQKEKQPFAEFETALRT
FT                 QLAYCEFECEKCHTSYAHRMLRDQIVIGVHDKKLQLKLLDGKSEPLDXIIE
FT                 ACKTYEAAVEHKLLLTQKEXKNINVLEKAEPEXVTALKTASCYRCGQPYNG
FT                 RHSSYCPANGVKCDGCGKSGHFKKYCRNNVKSNNSTRAPRPIEVKKNETKQ
FT                 XATQKNXHAVNWSEQGNSFGKEQEREQSELVSKNNSRYRISLNNSSASGIA
FT                 KWTKKXXIQDWPVEFKIDSIQSASTFPPERDSFIKTNANIFEGLGNIPGTC
FT                 SIILKENSIPSLHYKXRIPMSLHDRLKKELETMQAQEIISFVDYPTDWVNN
FT                 MQIVEKPNGSLRICLXPKPLNTCIKREHFLIPTSEDLLSRMAGKRVFTVLD
FT                 LRNGFWQMKLDRQSSDLTTFMTPFGRFRWNRLPFGICSAPEMFQKRMVQLF
FT                 GDIPGVEVYFDDVAIAGKDYEEHDKTLAIVIERAVENNIKFNSVKTQYRSK
FT                 EVKFMGHLISNGQIRPDRSYIEAIINMPRPSNKPDVLRLLGLLKYIGKFIP
FT                 NLSKRTVLLRALSRSDVDWFWTNDHQQELEELLKSITTTPVLAIFDPHKPA
FT                 VVQTDSSKDGLGSVLIQDGRAVAYASRTLSKSEQKWAQIEKELLAIVFACE
FT                 RFHHFLYGREFVVQSDHKPLETLIKRDIDDVTPRLQRMFLHLLKYPGINIQ
FT                 YTPGKDLLIADCLSRAALPEDKEMIEGLSGMIHNITRKVCLSPXNYNLYVQ
FT                 TLNKDERYRRISEYIVNTWPSYHQLDDFGQQFYKHRHLLHFENGLLLKEHR
FT                 LVIPTSLQSKIAKWLHAPHLGIEKTLARARNQFFWPGMTNDITEIVTXCKV
FT                 CEKFARKNQKEPLLQDSIPNYPFEVVGIDLYEYAGQDHVAIVDSYSGFVIS
FT                 RQLREKSANHTIEILDRVFCDYGYPTKIRCDNVPFNSLAFDTYANECNIEF
FT                 VFSSPRYPQSNGLAEKGVAIAKNILKRCYEADDLKSFRYRLLEYNTTPIAS
FT                 MXLSPVQLFFGRQLKSRLPTSNXLLLRXYMTENEVKNXLERKRRYQKHYFD
FT                 RSSKSLPILKIDEKVMFKKNDKEWNYGKIVKXMNSRSYIIQDTLGNHFRRN
FT                 RRLIRKTTNEDVDTSELGPNIGWGIHSKQSDQLARPAAVQTDQSMSHDRLX
FT                 VEETIEILDQNNSCTTGSTEEVINTEQANSRSQSDMSDTNVPRATRSGRVV
FT                 RPPNRLDL"
XX
SQ   Sequence 4069 BP; 1418 A; 737 C; 844 G; 1050 T; 20 other;
     tggtgtcaga agtaaaacaa gtcgtgaatt atacgtgaag tcgtgtcgtg ataaaaaacg        60
     ctaaaaagaa caagggaaca tggaatcggg accggatcgt atgcaactga agccattaga       120
     ctgcacaaat ttggctagag agtggccaaa atggaagcag agatttaaca tctatatggt       180
     agccaagaat aaacagggcg acacggaaaa gaacaaaatt gcaatgtttc tttggtggat       240
     tggtgatcac ggtatggaaa tatataatac cttgtttccc agcaacggtg atatgcagaa       300
     aatgttcgga gaaacaacag aaaagaaatc caccgacaaa atagaaacaa aagaacgcac       360
     cctatcggat gtcatcaatg cattcgatgc ttattgtctt cctcggaaaa acttggccgt       420
     ggaggcgttc aaattcaatc tcatgtcaca aaaggagaag cagccgttcg cggaatttga       480
     aactgcgcta cgaacacagt tggcttactg tgaattcgag tgtgagaaat gtcatacttc       540
     ytacgcgcac cgaatgttgc gtgatcaaat tgtaatagga gtgcatgata agaaactgca       600
     gttgaaatta ctggatggaa agagtgagcc gcttgacaaw ataatcgaag catgcaagac       660
     atacgaagct gctgtcgaac acaagctgtt gcttacacaa aaggagsata agaacatcaa       720
     cgtgctggaa aaggctgaac cagaamaagt tacggcttta aaaacggcgt cgtgctacag       780
     atgtggacaa ccgtataatg gacgacatag cagctactgt ccagcaaatg gcgtgaagtg       840
     tgatggctgt ggaaaaagcg gccattttaa aaagtactgc cgaaacaatg tgaagagcaa       900
     caactcaacc agagcaccac ggccgattga ggttaaaaag aacgagacga aacaasaagc       960
     gacacagaag aattwgcatg cagtaaattg gagtgagcaa ggtaatagtt ttggaaaaga      1020
     acaagaaaga gagcagagtg aattagtaag taaaaataat tctcgttata gaataagctt      1080
     aaacaattcg tctgctagcg gaatagcgaa atggacaaaa aaatwctwca ttcaggactg      1140
     gccagtggaa tttaaaattg atagtattca atctgcctct acatttccac cagaaagaga      1200
     tagttttata aaaacaaatg ctaatatttt tgaagggtta ggaaatatac caggaacctg      1260
     tagtatcatt cttaaagaaa attctatccc ttctcttcat tataaaaawc gcataccaat      1320
     gagtttgcat gaccggctta aaaaggaact cgaaacaatg caggctcaag aaatcataag      1380
     ttttgttgat tatccgacag attgggtgaa caatatgcag atagtagaaa aacctaatgg      1440
     atccttacga atttgcttgs atcccaaacc cctaaatacc tgcataaaaa gggaacactt      1500
     cctcatcccc acatccgagg atctattgag tcgaatggca ggcaagcgtg tattcactgt      1560
     gttagatctt cgaaacggat tttggcaaat gaagttggac cgccaaagct cggatttaac      1620
     tacatttatg acaccttttg gacgtttccg ttggaatcgt ctaccatttg gaatctgtag      1680
     tgcaccggaa atgttccaaa aaagaatggt ccaattgttc ggagatattc cgggagtaga      1740
     ggtatatttc gatgacgtag caatagctgg gaaagattat gaagaacatg ataaaacgct      1800
     tgctattgtc attgagagag cggttgaaaa caacattaaa tttaactcag ttaaaacaca      1860
     gtacaggtcg aaagaagtta agtttatggg acatctcata tctaatgggc aaatacgacc      1920
     tgatcgatct tacatcgaag ctattattaa tatgcctagg cctagcaata aaccggatgt      1980
     tcttcgactc ttagggttac tcaagtatat tggaaaattt atcccaaatt tgtcaaaaag      2040
     gacagtgtta ctgagggcat tgtctagaag tgatgtcgac tggttctgga ctaatgatca      2100
     tcaacaagaa cttgaagaat tactgaaatc aataactacc acaccggttt tagccatatt      2160
     tgacccccat aagccagccg ttgttcaaac tgatagctca aaggatggtt taggaagtgt      2220
     gctaatacaa gatggaagag ctgttgcata tgcttcgcgc acgctctcca aaagtgaaca      2280
     aaaatgggct cagattgaaa aagaactgtt ggctattgta tttgcatgtg aacgkttcca      2340
     tcactttctt tatgggcgtg aatttgtagt gcaatcagat cataagcctc tcgaaacgct      2400
     gattaaacgt gacattgatg atgtcacacc gcgtcttcag aggatgtttc tacatttgtt      2460
     gaaatatcct ggaataaaca tacaatacac tcctggcaaa gatttattaa tagctgactg      2520
     tctctctcga gcagcgttac cagaggataa ggagatgatt gaaggattgt cgggtatgat      2580
     ccataacatc acccgtaaag tatgtctgtc gcccgakaat tacaatttat acgtacaaac      2640
     tttaaacaaa gacgaacgtt atcgtcgcat aagcgaatat atagtaaaca cttggccatc      2700
     atatcatcag ctggatgatt ttggacaaca attttataaa catcgccact tactccattt      2760
     tgaaaatgga ttgttgttaa aggagcatcg cttggttata ccaacatcac tgcaatcaaa      2820
     aatagctaaa tggttgcatg cacctcatct gggaatagaa aaaactcttg cacgcgctag      2880
     aaatcagttt ttttggccag gaatgactaa tgacattact gaaattgtaa caaawtgtaa      2940
     agtttgtgaa aaattcgctc gtaaaaacca aaaagaacct ctccttcaag attctattcc      3000
     aaactatccc tttgaagttg tgggcattga tttatatgag tatgcaggac aagatcatgt      3060
     agcaattgta gattcttatt caggttttgt tatatcgaga caattgcgtg aaaagtctgc      3120
     taaccacaca attgaaattc ttgatcgtgt attctgtgat tatggatatc caacaaaaat      3180
     caggtgtgat aacgtaccat ttaattcatt ggctttcgat acctatgcaa atgaatgcaa      3240
     tatagaattt gtattctcaa gtccgagata tccacaaagc aacggtcttg cagaaaaggg      3300
     tgttgcaatt gcgaaaaata ttcttaaacg atgctatgag gctgatgatt taaaatcatt      3360
     tagataccgt ctgctkgaat acaatacgac ccctattgct agcatggsac tatccccggt      3420
     acaactcttc tttgggcgtc aactgaagtc gcgtttacca acctctaacw atctattgct      3480
     acgtaastat atgactgaaa atgaggtcaa aaatawatta gaaagaaagc gccgttatca      3540
     aaaacactat tttgatcgct catcgaaatc cctgccaatc ctgaaaatag atgaaaaagt      3600
     catgttcaaa aagaatgata aagaatggaa ctatggaaaa attgtaaaga tkatgaacag      3660
     tcgttcgtat attattcagg atacgttagg aaatcatttt cgaagaaata gaagattaat      3720
     taggaaaaca acaaatgaag acgtcgacac tagtgaacta ggacctaaca ttggttgggg      3780
     aattcattct aagcagtctg atcaactagc tagaccagca gccgttcaaa cagatcagtc      3840
     catgtcgcac gatcgtcttg akgtagaaga aacaatagaa attctggatc aaaataactc      3900
     atgcacaaca ggcagcacgg aagaagtaat taacacggaa caagctaaca gtaggtctca      3960
     aagtgatatg tctgatacaa atgttcctcg cgcaacgcgc agtggccgcg tagtacgtcc      4020
     acccaataga ctagatctat aggtttaaat taaaagaaaa aagaaagcg                  4069
//
ID   Gypsy-68_AnFu-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   .
XX
DT   13-APR-2021 (Rel. 26.06, Created)
DT   13-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-68_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-133
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2880-2880 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 133 BP; 50 A; 19 C; 35 G; 29 T; 0 other;
     tgtaataaga tgtgcttgta tggcagcact gctgtcaaga gggacaagac agaattgtca        60
     gacgcacgtg tacggttgag gacgaaggtc gtacagaaat aaatagtacg aataaaatac       120
     agagaatatt aca                                                          133
//
ID   Gypsy-68_CQ-I repbase;    DNA;    INV; 4346 BP.
XX
AC   AAWU01020187;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68_CQ_;
KW   Gypsy-68_CQ-LTR; Gypsy-68_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4346
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 515-515 (2011).
XX
DR   GenBank; AAWU01020187; Positions   24367   20022.
XX
CC   Positions [3358-3825] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2032..4335
FT                 /product="Gypsy-68_CQ-I_1p"
FT                 /translation="MVAGLDGVEVYLDDVLVHGRTPEEHRSRLLKVLERIQ
FT                 EWGFTLRIEKCSFFMPEITYLGFIVNNRGIRPDPSKTSAICSMPPPHDVSS
FT                 LRSFLGAINFYGKFVRNMHDLRHPLDALLRKDAKWDWNENCQESFEQFKNL
FT                 LRSDLLLAHYNPELETIVAADASNYGVGACLMHRYDDGSIKVVCHASRTLT
FT                 SAEQNYGQVEKEALALIFGVTKFHRFIWGRKFTLHTDHKPLVAVFGSKKGI
FT                 PVHTSNRLQRWALILLSYEFDIEHISTQDFGYADMLSRLIDARIKPDEDFV
FT                 IAAIQLEDELAAAMDEALNILPVTFKHLQVATSNDKLLQDVIKHVQSRWPG
FT                 AIKLVDAELRPFYARKDALSVVQGCLMLADRVVVPQQYQQQVLKALHRGHP
FT                 GQERMKKVIRSHVYWPGVDQDVDDFVRSCHGCAAVAKTPTKTLLSSWPLAE
FT                 HPWQRLHVDFAGPVEGHYFLVIVDSYSKWPEIFKTPTITARTTIDLLFETF
FT                 ARYGLPETIVSDNGTQFTSSLFKEFCESLGIIHIRTAPYHPQSNGQAERFV
FT                 DTLKRSLRKIMPGAEHDIGRSLQIFLSAYRATPNKSAPDGLSPAEVLMGRK
FT                 HRTTLDLLKPPSEHRAALQRNQRQEEQFNKRHGARKREFGKGDSVHASTFV
FT                 HGKLVWQTGTVIERVGNVMYNVWLNDKKRLIRSHTNQLRARGGSKVEAYPE
FT                 EAESEVKLPLHILLEDFQIIEDPVVAEDEQQAPPAPSQRRARVRPPSILRR
FT                 STRIRRMPERYNPYFYT"
XX
SQ   Sequence 4346 BP; 1034 A; 1272 C; 1162 G; 878 T; 0 other;
     ttttggcgac gaggaaagtg aaattacccc gcaatttcac ccgcgaaacg aacgcgcagc        60
     acgatggaca aggagtttaa ggcgatgttc cagcagctga tggagtcgca gcagaagctc       120
     atcaccgaac tggccatgtc ccggacggca ccaccgacga cgcccgcgcc tggtacgtcg       180
     acgaccgatg cccgtatgga agctctagcc aactccatga cggagttcca ctacgatccg       240
     gaatctaacc tcacattcga gaactggtac gcccgccatg aggataccct gaagtgtgac       300
     gctgccggtt tggacgatgc tgcccgtgtt cgtctcctgc ttcgtaagct cagcgacgcc       360
     acccacgcag agtacatgaa ccacatcctg ccgaagatga cgagggacta caagttcagc       420
     gaaactgtgg acaacctgac gaagctgttc ggcgctcacg tctctctctt ctccaagcgg       480
     taccactgcc tcacgctgac caagagggcc tcggttgact tccagtcgta cgccgggcag       540
     gtgaaccgct gctgcgagga tttcggtgtg gcccagtgca gcgtcgacgc attcaagtgc       600
     ctcatattcg tgtgtggcct acacaacaag caggacgctg agattcgcac atctctgctg       660
     gcgaagctgg aaggaaacgc gaacatgacc ctggacaacc tcactgcaga atgtcaccgc       720
     atcatcaatc tccgctaaga tgcgtctatt gtggaggtct caagtgacaa gtcatcggtg       780
     aatgcgatca cccacggccg ttctgacagc acacgacact catcagctga tcagaagccc       840
     actgcaacac gatcgcgctc ccctcacaac tccaacaaca acaatccaca cattagcagc       900
     aacagtcgtg gtggcagcag caaaaacaat aacaaaccac gaacaccgtg ctggaagtgt       960
     ggcgagctgc actacgtgga gttttgtcag tacctgaacc atcgctgccg ggattgcaac      1020
     cgggtcggcc acaaggacgg gtactgccag tgtgtgcggt cgaatccagg taaaaagcgt      1080
     cgcgagaagt ccagccagcc agtgcacacc agggggatct acgtgagaca gctagctgtt      1140
     caccgcaacc gaaagtttgt gaccgtggtg attaatcacg tcgagcttca actccagttg      1200
     gactgtgctt ccgacatcac cgtcctcacg gaagccagct ggagacgcat cggacgacca      1260
     ccattggagc caccgtcgca gcaagctcgg actgcttccg gacagccgct ggacctgatc      1320
     ggcgagatcg tctgtgacgt cacgctgaaa ggagtgcatc gttcaggtaa agtttacgtg      1380
     accaacatta acgatctgaa ccttttaggc ctcgacttca tcgatctctt caacctgtgg      1440
     gatgtccccc tgagcacggt ttgcaacctg gtgacgtcat cgaaggacaa cgtggagtgg      1500
     ctgaaagcgt cgttcccgca gctgttttcc gactcactcg gatgctgcaa gaaggctgaa      1560
     gtgaaacttt acgttttgcc agacgttcag ccagtgttcc gtgccaaaag acccgtgccg      1620
     tttgccgccc tgcagccgat ccaaaccgag ctagaacgcc tccagaagct ggacatcatc      1680
     tcgccggtgg agttttcgga ctgggctgcc cccatcgttg ccgtcaagaa gaagtccgtc      1740
     aacggtgagc caaacaaagt gcgagtgtgc gcggactact cgactggcct aaacagcctc      1800
     atccagccga accaacatcc gctgccattg cccgaggaga tttttgccaa gcttacgggt      1860
     agcaagatct tcacgcacat cgacctgtcg gacgcgtacc tgcaggtgcc cgtcgagaag      1920
     gagtccaggc agtacctgac gatcaacact cacctgggcc tgttcgagtt caaccgcttg      1980
     tcgcccggtg tcaagtcagc ccctggcgcc ttccagaaga tcgtcgagtc gatggttgct      2040
     ggcctcgacg gagttgaggt ttacctcgac gatgtgctcg tccatggcag aacaccggaa      2100
     gagcaccgct cacgtttgct gaaggtcctg gaacgcattc aagagtgggg tttcaccctg      2160
     cgcattgaga agtgctcgtt tttcatgccg gagatcacct atttgggatt catcgtcaac      2220
     aaccgaggaa tcaggccgga cccgtccaag acgtccgcca tctgcagcat gccacccccg      2280
     catgacgtca gcagtttgcg ttccttcctc ggtgcgatca atttctacgg aaagtttgtt      2340
     cgcaacatgc acgacctccg acacccactc gatgctctgc tgcgcaagga tgccaagtgg      2400
     gactggaacg aaaactgcca ggagtcgttc gagcaattca agaacctgct ccggtcggac      2460
     ctgcttttgg cgcactacaa ccctgagctg gaaactatcg tcgccgctga cgcgtccaac      2520
     tacggtgtcg gcgcatgttt gatgcatcga tacgatgacg gctcgatcaa ggtggtgtgc      2580
     cacgcgtccc gaacgttgac gtcggccgag cagaactacg gtcaagttga gaaggaggct      2640
     ttggcgctga tcttcggagt taccaagttt catcgcttca tctggggacg gaagttcaca      2700
     cttcacaccg accacaagcc gctggtcgcc gttttcgggt ccaagaaggg aatcccggtt      2760
     cacacctcca accgtcttca gcgatgggcg ctgatcctgc tgtcctacga gtttgacatc      2820
     gagcacatct caacgcaaga ctttggctat gctgacatgc tctcgagact gatcgacgcg      2880
     cggatcaaac cggacgagga ttttgtgatc gccgcaatcc agctcgagga cgaacttgca      2940
     gcggccatgg acgaagcact caacatcctg cctgttacct tcaagcacct acaagtggcc      3000
     acaagcaacg acaagctact acaagacgtc atcaagcatg tccaatctcg ctggcccggg      3060
     gcaatcaagc tggtcgatgc tgaacttcgc ccgttctacg cgcgaaaaga cgctctctcc      3120
     gttgttcaag ggtgtctcat gctggctgat cgcgttgtcg ttccccagca gtaccagcag      3180
     caggtgctca aggctctcca tcgaggacac ccaggtcaag agcgcatgaa gaaggtgata      3240
     cgaagtcacg tgtactggcc aggtgtggat caagacgtgg acgacttcgt tcgttcgtgt      3300
     cacggctgcg ctgcggtggc aaagaccccc accaaaactc tgctgtcgtc gtggccccta      3360
     gcagagcatc cttggcagcg cctccacgtg gatttcgctg gtcctgtcga gggtcactac      3420
     tttctggtga tagtggactc gtacagcaag tggcctgaaa tattcaagac accaaccatc      3480
     acagcgagga caacaatcga tctgcttttc gaaacgttcg ctcgctacgg gctcccagag      3540
     acgattgttt ctgacaacgg tacgcagttt actagctcgc tcttcaagga attctgcgaa      3600
     tcgctcggca tcatccacat ccgcactgcc ccgtatcatc cccagtcaaa cgggcaggcc      3660
     gaaaggtttg tggatacgct aaaaagaagt ctgaggaaaa tcatgccagg agctgagcat      3720
     gacattggac gatcgctgca aatctttttg tcagcctacc gtgccactcc taacaagtca      3780
     gcacctgatg gactgtcacc tgctgaagtc ttgatgggga ggaaacatcg cacaactttg      3840
     gacctgctca aaccaccgtc ggaacaccgg gctgcgctgc agaggaacca gcggcaagaa      3900
     gagcagttca acaaacggca cggggcacga aagcgtgaat ttggcaaagg cgattcggtt      3960
     cacgcaagca cattcgttca cggcaagctg gtctggcaaa ctggcacagt aatcgaacgc      4020
     gttggcaacg tgatgtacaa cgtctggctg aacgacaaga agcggctcat caggtctcac      4080
     acgaaccaac tccgtgctcg ggggggctca aaagtcgagg cctatccgga agaagctgag      4140
     tcggaggtca agctacctct gcacatcctg ctcgaggact tccagatcat cgaggatcca      4200
     gtagtagccg aggatgaaca gcaggcgccg cctgcaccat cgcaacgtcg agccagggtt      4260
     cgaccaccgt cgattcttcg ccggtcaaca aggattcgtc gtatgccgga gaggtacaac      4320
     ccgtacttct acacctaaag gggagg                                           4346
//
ID   Gypsy-68_CQ-LTR repbase;    DNA;    INV; 212 BP.
XX
AC   AAWU01020187;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68_CQ_;
KW   Gypsy-68_CQ-I; Gypsy-68_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-212
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 516-516 (2011).
XX
DR   GenBank; AAWU01020187; Positions   20021   19810.
XX
SQ   Sequence 212 BP; 58 A; 55 C; 39 G; 60 T; 0 other;
     tgttggaccc ctaggaacaa ccctggatgc aaccctggat gagcgacact tgtcgtcatc        60
     ccgttgacat ccacgaccgg aaaccggttg tcataatccg cgagctcaag aagacacacg       120
     cataactttt taataaattt acttattcgc aataaatgct taattatttg tctccactcg       180
     cgtgtatcat tcgttgtttg cacattgcaa ca                                     212
//
ID   Gypsy-68_LMi-I repbase;    DNA;    INV; 5274 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 20.01, Created)
DT   04-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-68_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5274
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (04-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(703..1257,1206..1979,1952..2182,2127..2411)
FT                 /product="Gypsy-68_LMi-I_1p"
FT                 /translation="MESNGEKXYLLRSRDREQVDSSSNDQFDEHVNIDYIN
FT                 SDVDLSNQSEIVXNEGLVNVSDDVHSVINDCIENVESNFQNKDELVYLNQD
FT                 AINDEADIGSLNELAKQTSRXSHGTGSADMLPTQENAQSKNSNPDQNTFVS
FT                 LDQSLFMSMMQSLMAEIKSSKKEMKDEFRNANIELNLKKLKQYKENECKHR
FT                 IKFKKIEAVQRKLETGMNQLYKRCNEVXKIVDKLEAKTDEHINKLSQENVE
FT                 LGKKFEVCRFEINQNVDGKIKELNIKIDNQNKEVCTIKQQVDNLDDLNMKM
FT                 ASTCKYRCQQQVTXIHQVVTEQNVINRKVTAIEHKCTDNANVIHSKLIPEI
FT                 ETVNSHVAKLQEEIKEVSRTSCQVVTVGDASNACKYHSFSSKGNLHPVAFI
FT                 RQFENNIPPHYTEQQKIHMVASRFEGDVISWGTSVINKCKTYEDLCRHFDI
FT                 RGFVQAFLNQYWSTSTQNDVRNEIFEAKSFVNSGCNSYKELFQYYWEKNEY
FT                 LTDPLRESYFANFGTRKINWHQQKEKVTSPISVQEKLIGINKNDINNLLQV
FT                 LEQLDALSGNRQAREGWRRNRWQNDSAVTGSEVVGETETKTVTAGEKVCSR
FT                 AVAGARLEGGGAHISAA"
XX
SQ   Sequence 5274 BP; 1781 A; 787 C; 1153 G; 1544 T; 9 other;
     catggcatcc cttgcgggga aatctttgaa gtgtgagtgc tttggagaaa gttctttctc        60
     tgaggaaaag tgaggcttga atttatagtg aaaatttttt ttgaactgtg gcacatagga       120
     aatgtaatga acatgaactg ccccattgct acaatagaaa taacagagag gctcgtaaat       180
     gaatgttgaa ctgtaattca atgataattg aactgtggct gaaaggcacg aactgctaaa       240
     aatttatagt attgaagtgg tgacttgtgg ctacattctg tcgacgcaag ttacgtcgaa       300
     ttgtgctgtt ctcgtgttcg tggccattgg attacgtttc tttggcgacg gagaaaattt       360
     tatcgtgcta ctgcaagtgt agcgcgatct gtaacagcat acccgcgcgg acttacaatc       420
     gacaacaggt gcagacggga gcakcggacg acgcgcagcc aaggagccgg accaggtgcc       480
     gctacaacga caatgcgggt acgtccacca catcgccaca gcagcaattc ttctcaccgg       540
     cagcactcwg tgaaacaaca aagtgtaagt attacatcgg cactgcgtag ttagtgttaa       600
     gtagtggatt gtamaaggct ggcgggtagt ataatagcat attagccwag atagggtttg       660
     gaaaaaattt ctgttaaatt gataaagagg ttaaattgca aaatggagag taatggagag       720
     aagagstacc ttttgagaag tagagataga gaacaggtag acagtagtag taatgatcag       780
     tttgatgagc atgtaaatat agattatatt aattctgatg ttgatttgtc aaatcaatct       840
     gaaatagtak ataatgaagg tttagtaaat gtaagtgatg atgtacattc tgtgataaat       900
     gattgcatcg agaatgtaga gtctaatttt caaaacaagg atgaactagt atatttgaat       960
     caagatgcca taaatgatga agctgacatt ggtagtttaa atgaattagc aaaacaaacg      1020
     agcaggtwca gtcatggcac gggttcagct gacatgttgc caactcaaga aaatgctcaa      1080
     agtaagaata gtaatccaga tcagaataca tttgtgagtt tggatcaaag tttgttcatg      1140
     tcaatgatgc aatcattaat ggcagaaatt aaatcaagta aaaaagaaat gaaagatgag      1200
     tttaggaatg caaacataga attaaattta aaaaaattga agcagtacaa agaaaattag      1260
     aaacagggat gaatcagttg tataaaagat gtaacgaggt agakaaaata gttgacaaac      1320
     ttgaggctaa aacagatgaa catatcaata agctcagtca agaaaatgta gaactaggga      1380
     agaaatttga ggtatgtaga tttgaaataa atcaaaatgt tgatggaaaa attaaggagt      1440
     taaatattaa aattgataat cagaacaagg aagtttgtac tatcaaacaa caggtagata      1500
     atttagatga cttaaatatg aaaatggcaa gtacatgtaa atataggtgt caacaacagg      1560
     ttacacwgat acaccaggta gtaactgaac aaaatgtaat caatagaaaa gtaactgcta      1620
     ttgaacataa atgtacagac aatgcaaatg tgattcacag caaattaatc ccggaaattg      1680
     aaacagtaaa ttctcacgtt gctaaattac aggaggagat aaaagaagtg agtaggacta      1740
     gctgtcaagt tgtcactgta ggagatgctt caaatgcatg taaatatcat agcttttcca      1800
     gcaaaggaaa cttgcatccc gttgccttca ttcggcagtt tgaaaacaac atacctccac      1860
     actacacaga acagcagaaa atacatatgg tagccagtag gtttgagggt gatgtaatat      1920
     catggggcac cagtgtaatt aacaaatgta agacatacga ggatttgtgc aggcattttt      1980
     gaatcagtat tggtcgacta gcacacaaaa tgatgtccgc aatgaaatat ttgaggcaaa      2040
     aagttttgta aacagtgggt gtaatagtta caaagaatta tttcaatatt attgggagaa      2100
     aaatgagtat ttaacagacc cattaagaga aagttacttc gccaatttcg gtacaagaaa      2160
     aattaattgg catcaacaaa aatgatataa ataatttgtt gcaagtattg gaacagttag      2220
     atgccttgtc aggtaacagg caggcacggg aaggctggag aagaaacagg tggcagaacg      2280
     atagcgcagt gacaggatca gaagtagtgg gggagacaga gacgaaaaca gtaacagctg      2340
     gcgagaaagt gtgcagccgc gccgtagctg gagcccgtct agaaggggga ggggctcaca      2400
     tcagcgcggc atgaatagag gaagttatca tggaggcaac agggaatgtc atagtaatca      2460
     gaacagagat cacacacctg atagggacag acgccgtgaa gattcagaaa actaaaacaa      2520
     ttgcctcaga gggcgttgcg ttctttgcaa tgctaggtga gtgacgacca ccgcactcta      2580
     gtcgttggcg atattacttc cttttctttt ccgtattgcc aaccctcttc ttctatctaa      2640
     actgtaccta tcttctatat attcttatct atctggttag ggcctagtct tgcaccaaga      2700
     atatgaaatg tagacacatt catactggat tatgacaaca aacaggatac agatactgac      2760
     aacgttcttg tattgaacaa acacgacaat ataggcaaca atatgataca cctgatcaga      2820
     ccgaaaattg aagttattgg acacatacat atatatagaa tatgagaaat gacaacatta      2880
     taagttacga aaagcaaaca caagtagcta atgaacatat agatcgcaga aaagaagagg      2940
     agctattcca ggtaagtgct tacgatgttg tactcttcac atctcattga cagtacacat      3000
     gacaaggtat tttgttttgc aacgtgggac tggttattag tatgaaactt gagctggagt      3060
     atgcaagggt aaagttatag gcgatgtgta tccgccacaa tgttgtagat gattttttag      3120
     gcgacatgaa attccgccac tatttgtgaa gaggtgaatg tgtgacagtt gcatgatgtt      3180
     gcagaatagt attttgtgtt tggcacggga aggtcggaca cgtatgcaga gtaagagatt      3240
     tgttttaggt ggtacggcga gaggtgtcgg ccatcattat tgtcatttgt gtaaagaaaa      3300
     taggcgatgc aatttctgcc cacaatgtta gaaacatgca tacccatagc tcttaagagg      3360
     taaatataac tttgtccacc aagtgaaaca ataccaattt ataaatagat tactgtcacc      3420
     gtgaaatttg tatacactta tcctgtgata aaacctgcct caatgaatga agtctgcgaa      3480
     gtaaacattt taacaccttt ctataaaaca tgagtgtctt gtctaacaaa ctctgttaag      3540
     tatctaacaa aacgttacct acacctagaa acatataaaa attacatggt aagtacctgg      3600
     tagaatgaat gtttgtttgc cattatatga ttttgatacg atgaaataag tcctgatgag      3660
     tcggaagcca caggagatta catattgatg gtataggggc ctaatatttg aaatactgat      3720
     gaaaagagag acacgttctg cttatgagtg aaggcaatga ggcgtaagtt tgcttgtttt      3780
     gcgtgagaaa tatcccgtaa cagaatgaac tgagttgact acgaaatatg aatcacattt      3840
     gtatgtctat ggatgaatta tacctaacat tctttagtaa cagaatgtaa acatagaaag      3900
     caatgacctt aggcaggtgg gccgcgcgcc acaacaaaag atgttacagt aggtaagtgc      3960
     agccagcgct acagcgtcag ctggcatgag attacactga cttgagaccg aagctgcagg      4020
     cttctgaata catataaaac gggacattta tttgtaaata gtgaagatta tttctgaaac      4080
     agttgaacaa acatgagaat gaaaattgtt atggatttaa taataagtta agaacaattg      4140
     ctatttctgt aactaattgt ttttttaggt ttaatgattt gtaaattaat tgtctaatta      4200
     gtgttatttc tgtattttca tatatccata tgagctacct ctgctgatat gtatgacgag      4260
     atgagggatg gagaaagctg gaataaatgc aacataataa tcacttcagg acactgcaga      4320
     gtaaaatgga ttggtgggcc tgttctaatg ccgcttgctc gcctctgccc tatgcacacc      4380
     tgctgccgca ttcgtctgtc caacgattac ccaccactcc caaagtgaaa cgtttatgtg      4440
     cttcatatat aatattaaag tgaaaatatg ttaagtgaaa agtgaaaggt gatgatgacg      4500
     tcacaatagt aagaagtgat gcgtgtgacg tagaacggca atgtgctgaa gtgtgatttt      4560
     aggacggcaa tgtgccgatt attgatgtag ttgattttag gacgtcaatg cgacgaatat      4620
     gattttcttt tgaaaagtga tattgtatat tttgtcacta atctgttttc actattgcgg      4680
     tattttctta tgataattac tcatatacta atttgattga tcatatttga cagagaatta      4740
     tttcatttcc tttcatgaca aatactactg tcatttctga ttgctaaatt ctcgcatgtc      4800
     catattgttg tttgtgtatt ggtagaatgt tgctaggtga atgtcagttt ttgagagatt      4860
     aggtgatctc attggttcat atgaaacatt gtgctactgt ttattattat tatttcttgt      4920
     ccttgataac taggtaaact ttttggcaat ttatgcttaa ttaagacttg ctatttttgc      4980
     tcatgaggaa aatctctcaa ttttggtgca tatttaatgg ttcatgtata tgaattttta      5040
     ataggtatga gttaggttta atgacaatac tgtttatgta tttatcaaag tgtaccactg      5100
     tatataggca ttgatgtcaa ttattatcta tgtttgggga tatattttgg attttatgtt      5160
     tatgttacag ttattatttt ttgactttgg gattattttg ttggaaaatg gtttcaaatt      5220
     atctgttgac ttcgagaaca ttctaatttg aaaatattca caagggaggg gatg            5274
//
ID   Gypsy-68_LMi-LTR repbase;    DNA;    INV; 1041 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 20.01, Created)
DT   04-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-68_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1041
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (04-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 1041 BP; 295 A; 199 C; 225 G; 322 T; 0 other;
     tgtggtggta ctggcttgca agccagcaac cattgcttta ttttatttca taattttgtt        60
     tacttataat gaaatagata tggggcagta gaaagtggct gtgccagata gtagccagat       120
     ggtactgtaa gtacggtccc gtgggaaaac tccgcccctt tctctagagt gatctgattg       180
     gctgttgcta tatctttacg cgccacaacc tcccagctat tttattaatt atttaataaa       240
     taaaaattca gttatcaatt ctattgccat aatgtgtttt aattaattgt ttgtgattac       300
     actattgttt tgtagattta ttagattaag tactttaggt aaagagtgag tatggcgttc       360
     tagaagtgtc ggttggcgcc aaaactctag gcactagcgt ggagcccagc tccactgcta       420
     gtcagttcac tgcgagcccc gacacggtaa acatctagcg gcacttgcga taaccagtct       480
     tgtattaatc ggtcgataat ggggctaaaa atatttgtaa agtgcgtgca atgtatgtca       540
     aagtgtgtta tgactgtaac aacgttagtt tattgtttaa ggaaactaat attgacgtca       600
     acatgcagtt tgtggcttct gtattcgtgt gattggtaaa aataaaagag ccactggcat       660
     ctctgaagga attcatcgac ttcgttaatg gtagttagac agccacagta tccaccactt       720
     tcaatttcag cctcacctca gaaaacttcg agtctacgac ctgtgtgctg cttctgcgct       780
     ggggacatct acgagagaga agacaccagg ttagtcaaat attaagtgac aaccgcctac       840
     gggcctcacg tgcaacgttc ggtctattac aactagacaa gttagcacgc tgctcgcggt       900
     aacgtgagtg aggtaaaggg aagataggaa agtgtcaagg aaactgtcac aagtggactt       960
     gataacataa actttaacca taacattgaa ttggtttaaa gattattatt tttatttttt      1020
     tctatctcca cccccgccgt a                                                1041
//
ID   Gypsy-68_TrVa-I repbase;    DNA;    INV; 5066 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-68_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5066
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 313-313 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           164..4948
FT                 /product="Gypsy-68_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPDPGPDNFNSIDLKPPPELKVDTSLPTNWKKFKSSY
FT                 TIYGIAKQVSTRSVEVQAAILLNFLGPDVLELLQTLKKADTDLHDPTKIIS
FT                 LLDEYVKPRINITFSRYMFYSREQQELEPFNTYFLALKKLAADCDFENINP
FT                 AEILRDKIILGIRDETVRAKLLGEATTLEKVVTLCQSVEAGRNRAKEVNNS
FT                 NQVSLDAINRYQNRQDQPKGQQPYNQPFNQSKGQQPFNQPFNQSKGQQPYN
FT                 QPFNQSKGQQPXNQPFNQSKGQQPFNQPINQPYNQSGMRQPYNQFREQQHS
FT                 FKPSNYHNGQERMHQQSHNQTACGNCNTQHGPKRCPAFGTQCQICGKLNHF
FT                 SQVCRSKSTNVSNCNALNVLVEDLGNVDIMEDDIVSISKLNCDNATKFQEI
FT                 NKPNVDKFWFQELTINNQVISFKLDTAAGCNVLPFELYRSLTNEPVLKCNQ
FT                 TIEAYGGTMVKPVGAAMLNCTVYKTNHLITFLVVDCNSMPILGLKTCQRLN
FT                 LVTRPKKVLAFQTNETEIRFTDEETFIKEFENVFNGENVGEFPVPEDIDID
FT                 PEVKAPNKPPRRLPRYVLRKLKLKLCKLEKQGVVSKDTKNVKWFSNLVIVE
FT                 KPNSNDIRICLDPSDLNKAIRRRHHFIPSFDEIKQKICGSKFFTVLDIKDG
FT                 FWHVKLSDNAANLCGFHTPWGEYKFLRLPFGINCAPEKFQGLNAKHFGSLK
FT                 GVEVYIDDLLVHGRTREEHDENLARVMRKAEELNVKFNLKKLQFRKPSIEF
FT                 MGHKISEHGTQPLNDYLEAIKKLKAPRNKKELQSILGFINYLREFIPNLSE
FT                 LTAPLRELLKKDAIFVWSKLHEDCLNKIKTVICNNTHLNNFNPDLPITIQC
FT                 DASKFGLGACLMQNGKPVAYGSRSLSTTEIRFATIEKELLGICFAVKKFHN
FT                 LIYGQKIVIHTDHEPLESIFKKDITKVLSNRIQRLMLKLSIYDLEVVYKPG
FT                 KTLLVADLLSRNFVEETVEDDPTMYEIVHNIDVNFEITSAKFKELQRESLK
FT                 DPEIQALTCMYQAGWKECKNELVKPYWNIRNDIFVNRDVVYFGNRIIVPKS
FT                 LRNFYMELLHCKSHAGTERTVKKASQIVFWPSYQKDITKFISECEICLKYQ
FT                 AKNRREPLIPHHIPEIPFYKIGMDFCDIGGKSYLIIEDYYSKWLEIEKVTG
FT                 KTAKEVIRICQKVFGTLGIPAIVVADNNPFNSFEFKLFLEENNSTLVTSSP
FT                 RYPQSNGLAENAVKKAKQLIRKSTESQVPLEEALREYRNTPISILNASPAQ
FT                 LCMSRVLRSRIPVNDEVLRPKLINVSNEIVQAQTKAKLNYDTKCKKEVNFY
FT                 SEEEVLVLNGNEWIPGKIVEKLEFPPRSYVVETSLGQTLRRNSSFVKKYPG
FT                 RNKRNFDNSPFSLVYFNCEDSLATEQEIMVNHENVENSDANEEGNIVNNLD
FT                 LEDSVNNLDLEDSVNNLDLEDSVIIEEEINVNKGNKKNSNVNQEDIIINND
FT                 NLKDSEILNVASTSKSVHHNSSDSESVNLSVNEDLFNTFEESVEATLSGKT
FT                 TENISESTEMNTSLENSRVENVKMLGPDQVLDISEKDSLSVSPQRYSLRNK
FT                 QKEDAEKCVGCSPKQKTKGCGRAKRNKL"
XX
SQ   Sequence 5066 BP; 1895 A; 808 C; 941 G; 1420 T; 2 other;
     tggcgacgag gatgaaatag taagttcgtg aaaatttttc gctcattacg tgagttcggg        60
     aaatgtgtct cgtgcgctca acgggttaca taacctaaca gtcgcgttag ccggctacaa       120
     agacaacgtc tttcacttat cgtgttaatc aaatcttttc aaaatgccag accctggtcc       180
     cgataacttt aacagcattg atctaaaacc acctccagaa ttaaaagtgg acacatcttt       240
     gcctaccaac tggaaaaagt ttaagtccag ttatacaatc tatggaatcg ctaagcaagt       300
     ctcaacacgc agtgtcgaag ttcaagcagc aattttgttg aactttcttg gaccagatgt       360
     tttagagcta cttcaaacct tgaagaaggc tgatacagac ttacacgatc caacaaaaat       420
     cattagttta cttgatgaat acgtgaaacc acgaatcaat atcactttct ctcgctatat       480
     gttctattcg agagaacaac aagagttgga accgttcaat acgtatttcc tagctttgaa       540
     gaaactggca gccgactgtg actttgaaaa tatcaatcca gctgaaattc ttcgagataa       600
     aattatctta ggcattcgag atgaaacagt tcgagccaaa ttgttaggcg aggctacgac       660
     acttgaaaaa gtggtcacat tgtgtcagtc agttgaagcg ggtcggaata gagccaaaga       720
     agtcaacaat agcaaccaag tatctttaga tgctatcaac cgataccaga atcgacagga       780
     tcaaccgaaa ggtcagcaac cgtacaatca accatttaat caatctaaag gtcagcaacc       840
     gttcaatcaa ccatttaatc aatctaaagg tcagcaaccg tacaatcaac catttaatca       900
     atctaaaggt cagcaaccgt wcaatcaacc atttaatcaa tctaaaggtc agcaaccgtt       960
     caatcaacca attaatcaac catacaacca atctggaatg cgacaaccgt acaaccagtt      1020
     cagggaacaa caacactcgt tcaaaccttc caattaccac aatggacagg agagaatgca      1080
     ccaacaatcc cacaaccaaa cagcatgtgg aaattgcaat actcagcatg ggccgaaaag      1140
     gtgtccagcg ttcggaactc agtgccaaat ctgcggtaaa ctcaaccatt tttctcaggt      1200
     gtgcagaagt aagtcaacga atgtaagtaa ctgcaatgct ttaaatgttt tagttgagga      1260
     tctagggaat gtcgatataa tggaagacga catagtttca atttctaaac ttaactgtga      1320
     taacgcaacc aaattccaag aaataaataa acctaatgta gataaatttt ggtttcaaga      1380
     gttaaccatt aataatcaag taatttcatt caagttagat acggcagcag gttgtaatgt      1440
     gttaccgttt gaattatatc gctcgttaac aaatgagcca gtacttaaat gtaatcaaac      1500
     tatagaagcg tatggtggaa ctatggtaaa accggtaggt gctgcaatgc tgaattgtac      1560
     tgtttataaa actaatcact tgataacttt cctagtcgtt gattgtaatt caatgcctat      1620
     tttagggtta aaaacgtgcc aaagacttaa tttagtaacc agaccgaaga aggtattagc      1680
     ttttcaaact aatgaaacag aaattagatt tacagatgaa gaaacgttca ttaaagaatt      1740
     tgaaaacgta tttaatggtg aaaatgtagg agaatttcct gttcctgagg atatagatat      1800
     tgatcctgaa gttaaagcac caaacaaacc gccaagacgt ttaccgaggt atgtacttcg      1860
     caaacttaaa ttaaaattat gtaaactaga aaagcaaggt gtcgtgtcaa aagacactaa      1920
     gaatgtaaag tggttcagta atttagtgat tgttgagaaa cctaactcta acgacataag      1980
     aatatgtctg gatccatctg atctaaacaa agccatacgg cgtagacatc attttatacc      2040
     gtcttttgat gaaatcaaac aaaaaatttg tggtagtaaa ttctttacag ttctggacat      2100
     caaggatgga ttttggcatg taaaacttag tgataatgca gccaatttat gtggatttca      2160
     cacgccatgg ggcgaatata aatttctgag attaccgttt ggaatcaatt gtgctccgga      2220
     aaaatttcag ggcttaaatg ctaaacactt tggttctcta aaaggagtag aggtctatat      2280
     tgatgatttg ttagttcatg gaagaacgag agaagaacat gatgaaaatt tagcaagagt      2340
     catgcgtaaa gcagaagaat taaacgttaa attcaactta aaaaaacttc agtttagaaa      2400
     acctagtata gagtttatgg gccataagat tagtgaacat ggaacgcaac cattaaacga      2460
     ttatttagaa gctatcaaaa aactaaaagc gccaagaaac aaaaaagaat tacaaagcat      2520
     attaggattt ataaattacc tccgggaatt cattcccaat ctttcagagt taacggcacc      2580
     actcagagaa ttattgaaaa aagatgcaat ttttgtatgg tcgaaattgc atgaagactg      2640
     tctcaataaa attaaaaccg taatttgtaa caacactcat ttaaataact ttaaccctga      2700
     tttgcccata acgatacagt gtgatgcatc caaatttggg ttaggcgcat gcttaatgca      2760
     aaacggtaaa ccagttgcat atgggtcaag aagcctaagc acgacagaaa ttcgattcgc      2820
     aacaatagaa aaggaattgt tgggaatttg tttcgctgta aaaaagttcc acaatctcat      2880
     ctatgggcaa aaaattgtaa ttcatacaga tcatgaacct ctcgaaagta tattcaaaaa      2940
     agacatcaca aaggtcctat ccaatcggat tcaaagatta atgttaaaat tgtccatmta      3000
     cgatttagaa gtagtctata agccgggcaa aactttatta gtggctgatc tgttaagtcg      3060
     taactttgtt gaagaaacag tagaagatga tccaactatg tacgaaattg ttcacaatat      3120
     tgacgttaat tttgaaataa cttcagccaa atttaaggaa cttcaaagag agtcgttaaa      3180
     agatccagaa atccaagcac taacttgtat gtatcaagca ggttggaaag agtgtaaaaa      3240
     tgaacttgtt aaaccttatt ggaatatcag aaatgacatt tttgtaaaca gagatgtagt      3300
     ttattttgga aatagaatta ttgtaccgaa atccttaaga aacttttata tggagttgtt      3360
     gcattgtaaa agtcatgcag gaaccgaaag aactgtgaaa aaagcgtctc aaatcgtgtt      3420
     ctggccaagt tatcaaaaag atatcactaa atttatatca gaatgtgaaa tttgtcttaa      3480
     gtaccaagcg aaaaatcgca gagaaccatt aatacctcat catataccag aaattccatt      3540
     ttataaaata ggtatggatt tttgcgatat tggtggcaag agttatttaa ttatagaaga      3600
     ctattactct aaatggctag aaattgagaa agttactggg aaaacagcta aagaagtcat      3660
     tagaatctgt caaaaagtat ttggtacctt aggtattcca gcaattgtcg tagcagataa      3720
     taatcctttt aattcgtttg aatttaagtt atttttagaa gaaaacaatt ccactcttgt      3780
     aacatcctca ccgagatatc cccaaagtaa cggacttgca gaaaatgcgg tcaagaaagc      3840
     gaaacaatta atccgtaaat ctactgaaag tcaagtgcca ctagaggagg cactaaggga      3900
     gtatagaaac actcctatat caattttaaa tgcatctcca gctcaattat gtatgagtag      3960
     agtgttaaga tctagaattc cagtaaatga tgaagtatta agacctaagt taatcaatgt      4020
     ttccaatgaa attgttcaag ctcaaactaa agctaaatta aattatgata cgaaatgtaa      4080
     aaaagaagta aatttttatt ctgaagagga agtcttagtt ttaaatggaa atgaatggat      4140
     tccaggaaaa atagtagaaa aattagagtt tccgccaaga tcatatgtag tagaaacaag      4200
     tctcggtcaa acactaagaa gaaactctag ctttgtaaaa aagtatcctg gtagaaataa      4260
     gagaaatttt gacaacagcc cattctcttt agtgtatttt aactgtgaag attcactcgc      4320
     gacagaacag gagattatgg taaatcatga aaacgttgaa aattcagatg caaatgaaga      4380
     gggaaatatt gttaataatc tagatttaga agattctgtt aataatctag atttagaaga      4440
     ttctgttaat aatctagatt tagaagattc tgttattatt gaagaagaaa ttaatgtaaa      4500
     taaaggaaac aagaaaaatt caaatgtcaa tcaggaagat attattataa ataatgataa      4560
     cttgaaagat tctgaaatat tgaatgtagc aagtacgagt aaaagtgtcc atcacaatag      4620
     tagtgatagt gagtctgtaa acctgtcggt aaatgaagac ttgtttaata cttttgaaga      4680
     gtctgtagag gcaacgttaa gtgggaaaac tactgaaaat atctcagaat ctacggaaat      4740
     gaataccagt ttggaaaatt ctagagtcga aaatgtaaaa atgctaggtc ctgatcaagt      4800
     tttagatata agtgaaaaag atagtttaag tgttagtccg caaagatact ctttaaggaa      4860
     taagcagaag gaagatgctg aaaagtgtgt aggatgtagt ccaaagcaaa aaacaaaagg      4920
     ctgtggacga gcaaaaagaa ataaattgta agtaaatgta tctgcaaaaa attaaaatgt      4980
     agtaatccta gaaaaggaga atttgtattg tatcctaaaa caggaaattt gtaatgtgtt      5040
     tttttttttt ttttgaaatg gggagg                                           5066
//
ID   Gypsy-68_TrVa-LTR repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   06-AUG-2021 (Rel. 27.01, Created)
DT   06-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-68_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-172
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 372-372 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 172 BP; 39 A; 44 C; 26 G; 62 T; 1 other;
     tgttgatgac gtcatgttgt tgacgtcatg ctgccctctc tcacagagcc tgtattcggt        60
     actcgtgtct cgtggtatca tcttgtcaag tcatcctact tttgtkcact tacttttaat       120
     aaaataccat tttattaaaa gtccgtcttg ttccttacac acccacacaa ca               172
//
ID   Gypsy-690_AA-I repbase;    DNA;    INV; 4322 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-690_;
KW   Gypsy-690_AA-I; Gypsy-690_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4322
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4322
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2057-2057 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4322 BP; 1338 A; 830 C; 987 G; 1167 T; 0 other;
     gtaaatcaga agtgggatcc gaccggcacc gctttaagtg acgtcgattt cgagtttacg        60
     atcggaaata acttcgaagt taaccgtggc agttgtggcg gaggccgagc ccgatacgag       120
     agtacgattt ctattagtga aaagtactaa cggattatga gcatgccgcg aaagcacaga       180
     cagtcatgcc ctgagcaaaa tcaggagcga ctactgcatc cggaggagct caagcatttg       240
     atcccggagt tcagcgaggg aactggcgtg accagatggt tacaaacaat cgagcactat       300
     gctggaatgt acgggtggac ggatgcaaca tgtttgctgt atgcaagttg ccgactggta       360
     ggagcagcat tagagtggta caatgggttt cgcaacatca ttaattctta cgcagcgctc       420
     agattgatgc ttgttaaagc atttccggat catcgaaacg aagccgacgt tcatcaggaa       480
     ctccagcagg tcgcaaagca gtctaacgag tcttacgagc attttgtttt tcgagtcaac       540
     gctttgggga tttctggagg agtcagtact gaagccataa tcgtgtatgt tattcgtggt       600
     ttgtcgcacg acccgatcta cgaaagcttg atttcccggc agtatgagga tatttatcag       660
     ctactggatc acatcaaatg gtgcgaaacg aacttgcatc atcggaagaa gaaaaaaagt       720
     gtgaaaccgt tcaaacaaac caccgaagaa cgaagcctac tgggaccatc gaagcagaaa       780
     ggaccgttca tttgttacgc aacgaggatg gtcataagtc gataaattgc ccgaagccac       840
     aacgaatgga aagatgttcg aactgtctgc aaagcggtca tacggcgacc ggttgcatga       900
     agaaagcagt aacagcgact agatctgcag tgtcaacagc ggggcccagc aagcttagca       960
     ccaacatcgt cagggagaac aataaacaac ttgaatcgga gacgaagatt ttgagtacgg      1020
     atgccgattt ccgagtcatg gcgcaggtca tccttggaac agagttgaag gagctagatt      1080
     gcttagtaga ttcaggtagc gcggtaagtc tgctcaatgt ttctaatttc cctcgtaatg      1140
     tgaacatgca accaagtcac gttgaagctc tttttggagc aaatgatacg gaaattaaac      1200
     agttaggttc agtgaatacg aaattgatcg cgaatcaagc cgttttcgat gttcgcttca      1260
     ttttggttcc ggactcgact atgagtgttg atattatttt gggtcgtgat tttcttcagt      1320
     tgaataacat tagaactgtt tgtttttccg atcccagtaa tacgggacaa ggttcaaatt      1380
     gctacgatgt ggagttgatg agacatgttt ttgtcgattc tgatcaggat aacggtgatg      1440
     aatctacgat tcttgatcaa cgtttgaccc tcgacgtggg tgataatgag gaaactatta      1500
     aatgttattc gaatgttgtc gatatcttct accgcaatta cgttgatcgt gaaaggccaa      1560
     atcgacctct gacagattat aaatgtgaaa ttgaactgaa aaatgacaaa tactttactg      1620
     caacgcctgc acgtctgagc aactttgaaa ggcaagaact caatcgtatt gtagaagatc      1680
     ttctgcagag aaatattatt cgcgaaagtg attctccgta caccagccgt gtggtgttga      1740
     cgcgtaagaa aaatggaagc tatcgaatgt gcgttaatta taaaccactc aatcgccttg      1800
     tagaacgcat gcactatcct ttacctataa ttgaggatca gatactgaag cttcagggaa      1860
     aacgatattt ctcaacactg gatcttaaaa atgggttcca ccacgtagaa atagtagagt      1920
     catcgcgaaa atacactgct ttcgtaacaa gcgagggaca atacgagttt aaccgtttgc      1980
     cgttcggtta cgcgaattct ccttccattt tcgtgaagta tatttcgaaa atacttaaca      2040
     aaatgatcaa atccggcaaa atcgttgtat ttatagacga tattctcgtg gcgtctgagt      2100
     ctatcgaaga gcatctcgaa atattgactg aactgttcaa tatactatcg gataaccttt      2160
     tggatctaaa ttacgaaaag tgtaagttct taaaaacgcg aattgattat ttgggatacg      2220
     aagtttctca taatcagata caaccgtcgg aacatcatat tgaatcagtg cgagcaatac      2280
     cgattcctac ctcgaagaag agtcttcaac ggttcctcgg tttagtaagt tattttcgca      2340
     agttcatctt tcagtttaac aggatcgcgt ctcccctgta cgatttgatg aaagaaggaa      2400
     atgagttcaa cttcacggca attcatattg tggctttcaa ccgtttgaaa gaagccatag      2460
     tttcaaaacc ggttttgagt attttttcac cgatcgcgga aactcagttg cataccgatg      2520
     catctgctgc aggattcggc gcaattttag ttcaaagaca gatggttgac aatcagtttc      2580
     atcccgtgat gtttttcagt aggagaacat cttcttcaga ggcgaagctt catagctttg      2640
     aactcgaaac gcttgcggtg atctatagta tacagcgatt ccggatttac ttgtttggca      2700
     ttcattttac tattgtaacg gattgtaatt cgcttcgcac aactctggac aagcgcgacg      2760
     taagcccaaa aatcgcgagg tgggcattat tccttgaaca gtacgattat gaaattgtac      2820
     atcgtagtgg cgaccgaatg cgtcatgtcg acgcactgtc gagaatacat atctacattc      2880
     tcgatgacga tgagcgcgaa atatcaaatg tttttaataa cgccttatat gtgaaccagt      2940
     tgagagatga taacattcaa aaactgaaac agaacgtaat taatgatcga ttggacggtt      3000
     acgagattcg cgaaggaatt ctctacaaga ttgtcgataa aaaatctttg ctttatgttc      3060
     ccaataacat ggagcaatcg attatctaca agtttcataa tgaaactgga cattttggga      3120
     tagataaggt ctgcgaaatg attaaacgtt tatactggtt cccaaaaatg cgtgaaaaac      3180
     tttcagatca aattaaggcg tgcattgtat gcatagcata taatccgaaa cagcgtaagt      3240
     acgatggaaa actgaacagt atcgcgaaac cgaatgtacc tttcgacatg gttcatgtcg      3300
     atcatatagg accattggaa acgacaaaaa gcggtaacaa gtacatattc ggtatatgtg      3360
     acgcgttcac taagttcttg aagctatatc ctaccaaaac cacgaacacc aaggaagtga      3420
     ataaatacct taaaaattat gttcacacgt attcgcgacc taaagtattg gtttccgacc      3480
     gaggatcctg ttttacttcc gaaagcttca agaaaatgac cacggaccat gggatagttc      3540
     acttgttaac tgcaacagca tgccctaagg ctaacggaca gatcgagagg tacaatagga      3600
     cggtagttcc actactctca aagttagtcg aggaacgaaa ccaacagtgg gattcagtgt      3660
     tgtcggaggc tgaatttcta atgaataata ctataaatcg gtcaattaat gatataccat      3720
     ctgtattgct attcggagtg gttcaaacgc gaaaggttca aagtgacatg accaactact      3780
     tgaacgaatt gaatgaacaa tgcgaacgtg acatgcagga gattcgacgc aaagcgtcgg      3840
     agagtattca gactttgcaa gactataata agactcagta tgatcgacac tgcactcaga      3900
     atacgaccta taaagaggga gatttggtaa tgatccgtaa cgtgagagcg gtaggcgaga      3960
     gtaataaact gaagccgaaa tataagggtc cgtatagggt caagagagtt cttgatcgga      4020
     accgttatgt agtttcggat attgaaggat accaggtctc acaaatccct ttcgaaggta      4080
     tatttgatcc tcttaatatg cgtttgtatc agtctgtagg tactgacgag agttacgatt      4140
     caaacgaatt tgtaccttct gatgccgaat cggattttct gggcttcgaa gattgaagtc      4200
     ggctttttgc gagatgctat attgttacaa aaacctaatt tcaagaagta cgaggtaaat      4260
     aagagaacat caggagataa taagactcca ttgaggacaa tggaaatcag gatggtcgaa      4320
     gc                                                                     4322
//
ID   Gypsy-690_AA-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-690_;
KW   Gypsy-690_AA-I; Gypsy-690_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-243
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-243
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2105-2105 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 243 BP; 72 A; 26 C; 68 G; 77 T; 0 other;
     ctgtagcagt ttgtgagagt cattaatgtt tttctcttag tgtagcggta ggagtgtgaa        60
     ttgtgctgaa tagttgagaa ggaagttgta ggatggtcga gatttgttga gcagatgaca       120
     tccggtacgg acagatagag aatagccagc catgatgtat ggcagacatt tttgtgatcg       180
     gaaaaatttc gtttgaataa agttaatgtt ttacgaaaac gtggaaattc ggatgctata       240
     ata                                                                     243
//
ID   Gypsy-691_AA-I repbase;    DNA;    INV; 4392 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-691_;
KW   Gypsy-691_AA-I; Gypsy-691_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4392
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4392
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2058-2058 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4392 BP; 1399 A; 841 C; 1100 G; 1049 T; 3 other;
     tttggcgacg aagatgtgtt aaaatgaaac ctgaaggaaa cgacttcggt aattgattga        60
     attcggccgg aaaagttcgg aaaagtttgg aaataaaaga atatttgaga ttgaatttgc       120
     ggcaaggaaa gtgattggag caaaatggcg gtgaaacgag tcggaaaata gactgaacga       180
     aaaasactat gcgatgattt tggagatgtg attggtgacg accgtgacga cgctgttgtg       240
     agcggcgtcg gtggtgtact gaaaaaagaa gaagaaggtg acacggttgt gttaaaaacc       300
     aaaataaaca aaaagtgaga atcttatagt gcgcgaaacg gtctgcaaag ttcagtccgt       360
     cggaagataa gtgaaaatgg agaatcatac tacatccaat ctcccgagat tcgaccccag       420
     tgacacatca actgtctcta atcggtggaa gaaatggaag cgctgcttcg agattttctt       480
     ggaggtcaac aatgtgacga cwtccaacsg gaacgctcgt atttgttaca ctatgcgggc       540
     agtgacgtcc aggatatatt tttcaatttg cgtggagaag aagaagttcc cataccggaa       600
     ggctcagatt tgtataagga gtcagtgaaa ttgctcgacg actatttttt gccactaaag       660
     tgtttgccga gggaaaggca tatattcaga aaccttgaac agagccctga agagtcgatc       720
     gagaaatttg tgttgcgcct gcgagagcag ggaagcctgt gtgaatatgg gaactggctg       780
     gacgagaaca ttaaagagca gatattcgaa aaaggttatt cggatgagct aagatcgaag       840
     atacttacga aacctgacat gacgctggct cagacaattg aagtggcacg ctctttggaa       900
     accatcgaga aacatcggaa acatctcatc aaaacggaaa gggtgaatca agttaccgga       960
     tcaagaggag agtgcttccg ttgtggttac tccggccatt acgctaatga tgacgaatgt      1020
     cctgcccgtg acaaaaagtg cgagaagtgt cacttgaccg ggcacttcaa gagatgttgt      1080
     aagacgaagg gagctcggaa aactgctcgg catcctaagg actccaagtc aaggcgtagg      1140
     aatacggtga agcaaatctc gaaggatgat tcggaaagcg gagaagaatc gtatgatgaa      1200
     gaggattcat gtgatgacga cgaacaaagc gttaattacg ttttctcggt aaccccagat      1260
     ggagaagaca atgtttcttg caaggttgga ggaattaaac tatcgtggat ggtggattct      1320
     ggagcaggcg ttaacgtcat cagtcagtct gcgtgggagt acctgaaaag ccaaaaagtg      1380
     aaagtgcaat accaaacaga caaggttaag aagaaattgt tggcatatgg aaacaatcag      1440
     ctcaacgtgc taggtatgtt tgttgctgac atagccacga agcagtcaac cgtgagcgat      1500
     aagatcttcg tagtcaagga acccggatca aacctactcg gacgcaaagc agctactagt      1560
     ttgggaatct taacaattga cacttcgatc tgtagaatcc ggtcagatcc agaaaagatc      1620
     ggcaagttga aaggagttgt ggtggaaatt caaatcgatc ctaaggtgaa accggtccag      1680
     cagacgcaaa atcgtatccc gattccattg caaccgaagg tcgagcaaga aatagcaaga      1740
     ttactagagc aagatgtcat cgaggaagcc ccacgagatt ctccgtggat ctcacgagtc      1800
     gttgtaagac caaagcaggg aaataccgat agtattcgat tgtgtgtgga catgcgagat      1860
     gcgaacaaag ctatagtgcc acaacaccat ccacttccta catttgacga tattgtccct      1920
     catctgcata actgcaaagt gttttcaaaa atcgacttga acaaggcttt tcatcaactc      1980
     gaattagcaa aagagtcaag accgattact acctttgcta cgcacaacgg ttattatcga      2040
     tacaagcgtc tgaccttcgg aatgaattgc gcttctgaag tatttcaaag cgtaatggaa      2100
     cgagtgctag caggaattcc gggcgtaaaa tctttcatcg atgatgtgtt ggtgttcgga      2160
     gcggacagag aaagtcatga tcgggcgttg aaggctgttt tggagcgact ggaagaaagt      2220
     gggatgactg tgaacgaaca taagtgtgaa tttgcgaaat ccgaagtcag cttcatgggc      2280
     catcagttga gtgacaaagg cataagtcca gcagaggaga aagtggccgc tatccgccag      2340
     tttcggaatc cagaatccgt cgaagagctt cgtagctttt taggtctgat caactatctc      2400
     ggtaagttca tccctaactt atcaactctc accgcaccgt taagaggact gttatgtaaa      2460
     gaaaatcgat tcaaatggaa ggatgaacat actctggcat tcgaaaaaat caaagatgaa      2520
     gttgctaatc cacgaaatct gggatattat tcgcccatgg atgaaaccat cctgattgcg      2580
     gatgctagcc ctgtaggatt gggagccgtt ttgctccaag agaaacaggg taaaaagcgt      2640
     gtaatatgtt atatcagtaa aggattatcc aaaactgagc aagcatatgc acaaaacgag      2700
     agggaagcat tagctttggt gtgggcgaca gaacgacttg aagcatattt aagaggattg      2760
     gagttcaaac ttattaccga tcatgaacct ctaaaagtca tattcggaac ccaacgtaag      2820
     caatgcccta gggttgaacg atgggcctta aggctacagt cgtttcggtt caagattgta      2880
     catgtcaatg gaaaagccaa tatcgctgat ccattgtcga gactccctcg ctttcgtgaa      2940
     tgctcaacgt atgaccaaga cggcgaagtt atgctcatga gtatccttga gtccgccaaa      3000
     cctagtgcaa tctctttggc agatatttta gaaagaacct tgaatgactc tgaaatggtg      3060
     agattgaaag aggctgtcaa cacgggacga tgggacgaaa aagttaagag ttattaccca      3120
     ttcagagagg agatagttgt agtgaatgac atcattatga gaagtaatcg gattattatc      3180
     cctgtcgttt tgaggaacaa agtattaagg cttgcacaca ttggtcatcc aggaatcgag      3240
     aaaaccaaac aacgtcttcg aagtaaggtt tggtggccaa aaatcgatag agatgctgaa      3300
     caaacagtga aagcatgtct tgactgtcag ttggtcagtt gtgctgcagc accagagccg      3360
     atgtctgtta gagaattgcc aaaccagccg tggcacacat tatcgatgga tttgttagga      3420
     ccactacctt cttcagaatc aattctcgtc ctcattgatt tgtacagccg atttcgagta      3480
     acagaggttt tgcaaactac tactagtgga gacatagtta atcgactgag gagaacgttt      3540
     ttccgaatgg gtataccggc tgtgttaatt tctgacaatg ctaagaattt ctcgagtaat      3600
     cagatgaaag atttttgcaa ggagctcggt atcaagcttg agcatactac cccttactgg      3660
     ccccaggcca atggggaagt cgagcggcaa aaccgttcaa tactgaaaat tttgaggatt      3720
     tcccaagtta ataacagtga ttggaaagct gatttagacg aagcgaacta tgtctactcg      3780
     ttaattcagc accctgcaac aggtcgttca ccttccgaaa ttcttttcgg tcgaaatttt      3840
     cgggactggg ttccgaagat agaagatgga gtcggcagag atgatgatga aattagagac      3900
     cacgattggc gctacaaaca aaatgctaaa attcgatacg acaacgtgca cagagctgga      3960
     gagtctacct tgcgtccaca tgacagggtt ctaatgagaa atctggtacc tcaaaacaaa      4020
     ctatcaacac cgtacattgc agaaccagtc gtcgttgttg agaagaatgg gagcaacgtg      4080
     ttggtcgaaa catctgacgg aagaagattc cagcgaaatt catcacacct gaagcgactt      4140
     caagataatg acgagcacga tcaaacgatg caggagaatg aggaggaatc gcgctgttcg      4200
     aattgggcaa ctccacaaga agaaaacagc agtacccctg ttcagggttc tcggagtatg      4260
     cagcgtgaaa gaagcagacc taaaagggag acaaaacgcc ctctacgttt cgaagacttt      4320
     gacatgaaca tttgagatga gtttttagtt gaatacccct gtactattcg aaaatcgaca      4380
     gaaaagggaa at                                                          4392
//
ID   Gypsy-691_AA-LTR repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-691_;
KW   Gypsy-691_AA-I; Gypsy-691_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-163
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-163
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2106-2106 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 163 BP; 55 A; 23 C; 41 G; 44 T; 0 other;
     tgttatattc cttaagaata aattaactgg gcgcactggt cgtagtagag ggagtgcata        60
     gatgggggtc aaaaggagaa cagtaaataa agaacagtaa atcgatgtag acgcgtgcgt       120
     tctgattcaa ttcgtttcta gattccgaag tctaaatgta aca                         163
//
ID   Gypsy-692_AA-I repbase;    DNA;    INV; 4279 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-692_;
KW   Gypsy-692_AA-I; Gypsy-692_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4279
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4279
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2059-2059 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4279 BP; 1256 A; 944 C; 1123 G; 945 T; 11 other;
     cctaagacaa cttgcgcgtc tggattgatg tcccaacatt tggcgacgaa ttcagggatt        60
     tttttgatta aattcgagtt tatcggttta aattcggtcg gctgcagtta atttgatcaa       120
     tttagcggcg gcataacgtg gagttgttcg ttggaaagcc gggaaaagtt catatttttc       180
     cggaaagttg tcggctacaa gttgttattg acatcgctgt gcgggagcag cgtcgcgacg       240
     cgtcggtgag tgaacatact atcggatggg tgacgacccg aagaaaaata tcctgaaaag       300
     tgatttcgcc tgagttgcgt aaagacaagt gaggatggat tcaaacagaa cgtccctgcc       360
     gattttcgac acgaaagaca cttcgtccat tgccacgaga tggaggaaat ggaaacggtc       420
     gttggaattg ttcctggagg taaactcggt ggcactggcg tcccgtaaaa agtcgtattt       480
     actgcactat gctggaccag cggtgcagga catcttctac gaacttgcag gacacgatgc       540
     agcccccccg atgggatcag atgtttatcg ggaggcggtt cgattactgg atgactactt       600
     tgcgccaatg gccagtgttc cttacgaccg atttgtgttc cgcagtatta gacaaaagga       660
     ggaggagacg gtggaccaat tcgtcagtcg tttgcgagaa caaggaagac tgtgcgatta       720
     tggtgacgcc ctcgacatgc ggattaccga acaaattttc gaccactgcc tttcggagga       780
     gctgcgcgag gtcattttga agaaaaagct gatgacagtg aacgaaatcg tcgaggaggc       840
     gcgaatgatt gaaaccgttc atcgaaataa ggagctgatg gcaaaggaaa aggacgaagg       900
     aaaggaagct gcgatgaaaa ctgaagtggg agaatccagc atcaaccgga tcaagactaa       960
     gaagaaggcg gtttgcttcc gatgtggact gactgggcat ttcgcaaacg amaaggcttg      1020
     ccctgcgagg aacaagatct gcgaccgttg caagattgtt ggtcatttta agaaaatgtg      1080
     caagacaaaa tccgactcat cgaaagataa gaagcgcggc aaagtactga tggtagctga      1140
     ctccggagct gacagcgtaa gcgccagtga cactgacagc gatgtgtgtc atatttacgc      1200
     tacaaatggc aaacaagcat acgttacatg ctacacgggt ggcgttaaat tggactgggt      1260
     gatcgactcc ggagctcatg tgaatgtgat cagcagggca acatggaagg agctgaagga      1320
     gaagggatgc cattacactt ctgcgaagaa gcctcagaat gcgcttcgcg tatacggtga      1380
     cggcgagctg agaatctaca aagttattca gactgacatt gcaacgcagt ccaagaaagt      1440
     caaccatcag atatatgtcg tggaccagca gaaaggcgtc aacttgctca gtaagcaaac      1500
     atcgatcgac ttgggagttt tggagatccg aggagaggtt ttcaacgttt cgcagcgtgg      1560
     aaagatgacg gtgggaaaac tggaaggggt gcagatcgac gtgaagatcg ataagaccgt      1620
     tacacccgtg caacaaccgt gccggcggtt gcctattcca ctgcaaaaac ccgtcgagga      1680
     caagctggag gaactgttgc agcaggatat tatcgaacca gccccgttga gaatcacctg      1740
     ggcttcacca ctggttgtga cgccaaagaa cggaggaaaa agtgttcgcc tgtgcgtcga      1800
     catgcgacaa gcgaataaag ccatcattcc agatcgacat ccattaccga cgttcgagga      1860
     gatcatgcca catctagacg gttgcaaatt cttcagcaag atagacttgg ttcaagcgtt      1920
     tcatcagctg gaactatcac ccgcatccag agaaatcacc accttcgtta caccgaatgc      1980
     ctactaccgc tataaamgat tgatgttcgg catgaactgt gctgccgaaa tatttcagcg      2040
     cgaaatacag cgagttctac aaggtctacc tggaacsaaa gtkttcattg acgacgtcct      2100
     ggtgtacgcc gctacgaagg aagaacacga taagcgagtg gcagcagttt tggaccggct      2160
     atcacagaat ggattaacag taaacgaaga aaaatgcgag ctgggtaagg cttccgtcga      2220
     cttcatgggg cacacgctgt caccggaagg aatattgcca accaacgaca aagtagcggc      2280
     agtccaggcc tttcgacgac cacaagatgc caaagagatg cgaagctttt taggcttagt      2340
     aaattacctg ggtaagttcg tacctaatct atccacgatt tcggcaccgc ttcgtgaaat      2400
     gagccaaaaa gggtccaagt ttcattggac cgcgcagcgc aaggaagcat ttcagcaagt      2460
     gaaaacagcc ctttcgaatc caaaatacct aggctactac agtcctaaca acccaacaac      2520
     tctggtcacg gacgcaagcg attgcggcct tggtgcagta ctactgcaaa cagtgaatgg      2580
     tcagccgcga gtgatcastt ttgcaagcaa gactctctcg ccaacggaga aaaagtaccc      2640
     tactttggac aaggaagcac tcgggatcgt ktgggccacg gagcgtttcc aaatgtatct      2700
     acgaggactg cattttacga tcctaacgga ccataaaccg ctggttaata tcttctgcga      2760
     gacatcgatt ccaaaccagc gtcaagagcg atgggtactg cgtatgcaat cataccggta      2820
     ttcaatacgg cacgttccag gagagctgaa cattgctgat cctttgtcca gactatgcga      2880
     ggtgctaaac gcaaaaacgt tcgacaagga gtctgagaaa gtcctttgct cgatcgtaga      2940
     agttaacaga ccctcagcgg tgactttcga cgagatcgta cagtgctctc aagacgacgg      3000
     tgaaacacaa caggtgagga aagcattgca tagcgacaac tgggacgaga cactccaaaa      3060
     gtacgtaccg ttcaagtcgg agttgtgctt tgcaaccgaa gtactactga ggaagaacaa      3120
     aatcgtgatt ccaaaacaac tacgaagtac ggtgctkkca ttagcacaca cwggacatcc      3180
     aggacaagag aagatgaaaa gaaggctacg agcagctgta tggtggccgg gaatagatgg      3240
     cgatgtgaag aaatcgtgta aggaatgttt cgactgtcaa gtggttgcgc catttgaaaa      3300
     accagaaccg ctacgaatca gggaattgcc atgtgctcca tgggttcact tggccggaga      3360
     ttttctgggg ccactcccta acggtttcta cttgtttgta ctgatcgatt tgtacagcag      3420
     gtatatgatt gtggaaccta tgaagcaaac ttcatcgagc gatgtgatcc gtaccctgaa      3480
     ggaaatattc accaggatgg gactacccca ggtgataaca ttggacaacg ccatgaactt      3540
     ttcgagccaa cttttgaaag atttttgcgt tgatcgtggc attaagctga cgcacaccac      3600
     tccctactgg ccaagtgcga acggtgaagc tgaacgacaa aaccggtcgc tmctaaaggt      3660
     tttacggatt agcaagaata acggaacaga ctggaaagac ggcttacaag agtatgtcta      3720
     catgtactcg atcactccgc attcgacgac cggcgttgct ccggctgagt tgatgtttgg      3780
     taggcgtttt cgagacctga tacctcatct gcaagaagct acgttggacg atggagaact      3840
     gcgggataag gactggactg tcaagtacca ggccaaagaa aacagagata aaagagtggg      3900
     agcaaaggag tctttggttg acgtcgggga tcaagttcta atgaagaacc ttctgccgca      3960
     gaacaaactg tctacaaaat tcctgacaac gccagctaca gtagtcgata gagtcgggaa      4020
     cagcgtcacg ctcaagacat ctgagggcca gctatacaaa cgtaatacgt cccatattag      4080
     gccgtttgtt gcgagtccta acgtcgaggc catgaccgag gtaccagcta acataacaga      4140
     atcgaacagc acagcacacg aagsgaagga tggggaacga ccatcacgtg aaaagcgacg      4200
     tcctaagcgt ttcgaggatt atttgttgta agctacgaat ttgagtaact atttatcttt      4260
     tgataaaaca aatgagata                                                   4279
//
ID   Gypsy-692_AA-LTR repbase;    DNA;    INV; 98 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-692_;
KW   Gypsy-692_AA-I; Gypsy-692_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-98
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-98
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2107-2107 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 98 BP; 35 A; 18 C; 19 G; 26 T; 0 other;
     tgttgtgatt aacatctatt attggcaaca ctgtaacgat agaaagaaat aaacgaagta        60
     cctaagacaa cttgcgcgtc tggattgatg tcccaaca                                98
//
ID   Gypsy-693_AA-I repbase;    DNA;    INV; 4260 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-693_;
KW   Gypsy-693_AA-I; Gypsy-693_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4260
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4260
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2060-2060 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 4260 BP; 1357 A; 884 C; 1042 G; 975 T; 2 other;
     ttttggcgac gaatggagaa aaacggatta aattcgtcga ggaagattgt aacacacatg        60
     gaatattcgt cggtacgttg attaaattcg aaatcagacc gagaatacag gattcacaag       120
     gaaaataatt cggaaaagcg ttgtgtctgt ggtcaaacat aacctataac caacatcgta       180
     gtgaagtgga atcgcagaat cgaaaaagaa tcgctgagaa aaggatccaa aacaaaaacg       240
     gaaaaagtgt ctcgccatag ttgcgtaaaa gaaaatggaa aacagtaaat caacattgtt       300
     gcctttcgat acctccaaca cggtatcaat cggaacgcgc tggaaaaaat ggaaacgttc       360
     gctcgagttg ttccttgaag taaattgtgt ggctctagca tccaggaaaa agtcttacct       420
     attgcatttt ggcggatcac aaatccagga tatctttttc gatacacctg gtcacgatgc       480
     tcaacctcca gcagattcgg acgtttacaa agaggctatc aaattgctgg atgcacattt       540
     cgcacctttt tccaatatcc cgtacgatcg ttatgtgttt cggcaaatga aacaatcgga       600
     agacgagtcc gtcgagaaat ttgtcggtcg tctacgagag caaggacgtt tgtgcgatta       660
     tggggctgta ctcgacatgc gtgttgcaga gcaggtcttc gataacagcg tatcagatga       720
     gttgcgagag gttatcatca aaaagaagtt gatcagcgtt gaggatatcg tacaagaagc       780
     acgcatcctt gaaacagtgc atcgcaataa agaagagatg aagaagaaca cagtgccagt       840
     ggatcaaagc aatttgaacc tagtacaaaa aggagcgaac aaggaaagat gttttcggtg       900
     tggaaatatc ggacactttg cgagtgataa gcgttgccca gcgaagaaca aagtgtgtga       960
     tagttgcaag ctggttggac actttcgtaa aatgtgcaaa accaagccgg atgaccgaaa      1020
     aatgaagaac aaaagaggga agaaagtgtg gcaagttcaa gattcaagcg atgaaggtgg      1080
     tgttcgagcg cgtagcgatt ccagcagcga tgatagtgac gacgatgtgc agcaaattta      1140
     tgcaacggga accaaacatg atctggtgac atgctataca ggtggcgtga agctagattg      1200
     gattatcgat accggagctc atgtgaacgt gatcagccgc aaaacttggc gatacttgaa      1260
     agaaagcggg tgtaaataca aggaactgca aaaatccaga aaattcctca gcgtatacgg      1320
     cgacggcaaa ctgaaagttc ataaaatatt cagtacggat attgcaacac gttcaacgac      1380
     agtgttccac gaggtgtatg tggtcgacaa cgaaactggc gctaatttgc tgagcaagaa      1440
     cacatcgttg gaattgggaa ttctggagat tcgcggggag ctgttctgtg tgcctggcaa      1500
     ggaagagctg aaagtaggaa aggtaaaaaa cttgcaggta aaaatcaaca tcaacaaaga      1560
     cgtagttcca gtccagcaac cctgtcggcg tctgccgatt cctttgcaag gcgtcgtcga      1620
     agaaaaattg gaggacctgt tgaaacaaga tatcatcgaa ccggctccag tgaagattac      1680
     ctgggcatct cctttggtag tcaccccgaa agatggaggt agaagcgtac gcctgtgcgt      1740
     tgacatgcgt atggccaaca aagcaataat acccgaacgc cacccgttac ctacgttcga      1800
     tgaaataatg cctcatctag acggctgtaa gtatttttca aaaatcgacc tcgtaaaagc      1860
     tttccatcaa atcgagctgg accccgcttc tcgcgaaata actacctttg taactccgac      1920
     cgcatattac cgctacaaaa gactgatgtt cggtatgaat tgctccgcag aaatattcca      1980
     acgagaaatc gagcgaattt taaagggaat aaaaggcgtt cgagtattca ttgacgacat      2040
     cctcgtgtat gcaagaacga aagcagagca cgacgctaga gttcaactag ttttaaagcg      2100
     acttgaagaa aatggactga cgattaatct aaaaaaatgc gagtttggaa agaaatcggt      2160
     agatttcatg gggcatacac tgtcggagca aggcatacta ccgatgaatg acaagatcag      2220
     cgctgtacaa tccttccggc ctccacaaaa cgctgccgag atgcgtagtt tccttgggct      2280
     agtaaactac gttggtaaat ttattccaaa cctctcggaa atgtcagcca ctctacgaca      2340
     aatggcagta aaggatgcca aattccaatg gacgaatgaa cggctacgaa gcttcaagaa      2400
     aatcaagtct gctctggcca atccgaagca tctcgggtac tatagcccac gaaaccgtac      2460
     gctgcttatc actgacgcta gtgacaatgg agtgggtgct gtgttggtgc aggtcattca      2520
     caacgaaacc cgcgtaatca gctatgcaag caagagtctc agcaaaacgg aacggaagta      2580
     ttcaacgctc gacaaagaag cattggcgat cgcttgggca gccgagcgat tccagatgta      2640
     cctaacgggt ttggaattca cggtagtaac ggatcataag ccgttagtta acatctttaa      2700
     cgaaaagtca tcacctaata agcggcaaga aagatgggtc ttaaggatgc aatgttttcg      2760
     atatcgagtg atacatgttc ctggaaaaac gaatattgcc gacccactat cccggctacc      2820
     agataatttg aagagtaaaa ctttcgacaa aggagctgaa gcagcacttt gcgctatcgc      2880
     cgaagtcagc aagccgacag cagtgacgat ggacgagatc attcagtgct ctgaagagga      2940
     ctcggagata caaaaagtaa agaaggcact acacgatgat caatggcaat gcgttttgaa      3000
     gaggtatgca gcgttcaaga acgagttatg ctttgagaac ggtgtactgc tgagaggatc      3060
     tcgaattgtt atcccactga aactgcggga aacggttctt aagttagcgc acagcggtca      3120
     tccaggtcgt gaaaagatga agcgaagaat gaggatagcg atctggtggc ctggaatgga      3180
     cgcagatgca gacaaaagtt gtcgagaatg ttttgattgc caacttgttg ctcctttcga      3240
     aaagccggag cctttgtgta tccgggactt gccagctgct ccatgggttc acctagcggg      3300
     tgattttctc ggcccactgc cagataacag ctatgtattc gtgttgattg acctctacag      3360
     tcgatatgtt ttggcagaac cgatgaccag aacaacctct cgtgatgtaa ttcgkttttt      3420
     gatggaaact ttcactagga tgggacttcc gctagtgttg acattcgaca acgctaggaa      3480
     tttttcaagc caggagatga gagactactg catcgacaac ggtatcaagc tgacccacac      3540
     cacgccatac tatcctagtg caaatggcga ggttgaacgc caaaatcggt cgatcctgaa      3600
     aatattgagg ataagcaagc aacataacac ggattggaaa gtggctcttc aagaatatct      3660
     gtacatgtac tctctcaccc cacattccgt gacgggagta ccaccggcgg aattaatgtt      3720
     cggaaggaga tttcgcgatt tgattcccca ctttgagatg ccatttctgg acgacagcga      3780
     gatgcgtgat cgggatcgaa tgatgaagta ccaagcgaaa atctacaggg acgaaaaagt      3840
     tggkgcgaag gagtcagcag tgtcagttgg ggacgaagtg ctaatgaaga acatgctacc      3900
     acaaaacaag ctggcttcta agtttttacc aactccagcg aaagtaatcg aacgacatgg      3960
     taacagcgtg acactcgaaa ctcaagatgg acagacgtac aagcgtaaca catcacatgt      4020
     gaaaccattg atacgtcctt ctatcacaga gaaagataca caactggatt cggcactatc      4080
     gacatcagtg aatcgtgaag aacccttaat cacggaagag gacaccaata aggagcctgc      4140
     tgaaatgttc agacccagcc ggcagacaac gcgtcctaaa cgctacgacg attatcatct      4200
     tgattaagct aaaggttatt cggtgtttct caactttatt aaattgaaat aagagagata      4260
//
ID   Gypsy-693_AA-LTR repbase;    DNA;    INV; 111 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-693_;
KW   Gypsy-693_AA-I; Gypsy-693_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-111
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-111
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2108-2108 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 111 BP; 34 A; 23 C; 21 G; 33 T; 0 other;
     tgtagtgaat cattagaact ggcaacacag ttatgccagt ctgttacctt agagagcaga        60
     ataaaaagtt acctcctcgt gtaagcgtgt atttcattca gctccattac a                111
//
ID   Gypsy-694_AA-I repbase;    DNA;    INV; 6940 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-694_;
KW   Gypsy-694_AA-I; Gypsy-694_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6940
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6940
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           569..2476
FT                 /product="Gypsy-694_AA-I_1p"
FT                 /translation="MVRYYILPNADHLTEEEMNFELTLRNVQIDENAKLED
FT                 KTRALRYAFKTQRMEPKLYDTGLSIVEEAKTLEKTIKSLKKSLRETFDYVV
FT                 VSRLRHYLIRLASASAEKEDEKELKTECCKEIEEIMRAYRQRVTYDPDHSN
FT                 DETDQDLGEGAKGLKDSWRNPNPQALAQTANLNRNIIRDKDGKSRTGTWPK
FT                 DNIGKDGKGRGFFSDRSLRDKDEKQEIEVDKTHGNHTPHGGSTKRVERTEK
FT                 QSSYKHEARNHSVKSKNKKQYEKNRACYSETDYSDSSVSEKTGDSWKKRNI
FT                 KSHHRSRGRCSTTSSSYSSTDEEEERGEWDRYRNSSRRSITPQRRFRSFRD
FT                 DFYRSRSRVENWDIVFSGDARSMQVEDFLNRVKKLAKHERVGKKELLDRIH
FT                 YKLKGEASDWWFTRENYCTSWDKFESEIRFRFGNPNRDRGIRAQLRELRQK
FT                 RGETFVAFVTEVEKLNQCLKHPHSSRTIFEIVWENMRPHYRSKLATTRVRN
FT                 LEHLLDLNHRIDATDLSLYRSGNNLRNEIHNIDAQSCSEEENSSFEEYAIN
FT                 ALQRKPKVTKETQKSSTTPSTQLPTRTDTATVKCWNCQKSGHHWRTCTEAK
FT                 LIFCYACGNLGRTTRTCERNHQQLHFSNQNVNNEHSLN"
FT   CDS           2464..5772
FT                 /product="Gypsy-694_AA-I_2p"
FT                 /translation="TFVKLDAGCTVWNPSISQSIEVVPEPNISLNFQKYQE
FT                 TLHIRVNPNICPKIRVSIFDTEIIALLDSGASISVLNSTKTVEKHGLKVFK
FT                 ATVTISTADNTEHECIGYANVPYTFAGTTKIIPTIIVPALSKSLILGMDFW
FT                 HAFGIRPMIKCKNQLAEVDLLDMNGQPMINLITPNVGMDVESNENEPEICL
FT                 KICSLELTENETIIAHKAKPEDDESLELPSLELSNDPELEIDIIETEHELT
FT                 EIEKLQLKETLKCFNWTSERKLGRTNLIEHEIEIIEGARMRDLPMYKYSPK
FT                 VWESIEKELERYEMLDVIEECTSEYASPLVPVKKSNGQIRVCLDSRKINSV
FT                 TKKDAYPMRNMNEIFHRLQKAKYFSIIDLKDAYFQVPLKESSRNYTAFRTP
FT                 KGLFRFKVVPFGLKNAPFTMSRLMNKAMGFDLEPYVFIYLDDIVIATETLE
FT                 DHFRLLKEVAKRLARAGLTISVQKSRFCRRQVKYLGYLLTENGLAIDGSKL
FT                 EPILNYPRPKSIRDVRRLMGLIGFYQKFVNNYSHITTPITDLLKKSKKFKW
FT                 TTEAEQALDQLKSVLTSSPVLANPRYDLPFIIETDASQLAVGAALLQDHPE
FT                 GKRIIAYYSKKLSSTQRKYAATEKECLAVLLAIENFRHYIEGSSFKVITDA
FT                 KSITWLFTITAANGNSRLLRWALKLQSYDFSIQYRKGKDNVLADCLSRIET
FT                 VQIVDDDYVNLRTQIANDPEKYKEFKIVGNRIFKFVQNTTKVEDKRFLWKY
FT                 YPPKQDRIEIIKSAHEPAHFGYEKTILKLKEKYFWPGMAIETKRFCKACTP
FT                 CKTSKSTNVNSIPPMGSQKPNCNHPWQFLTLDYLGPFPPSGKARNTCLLVV
FT                 TDVFTKFVLIQPFKQATASTLVKFLEQSIFLLFGVPQTILTDNGSQFTSNL
FT                 FKSLLEHYGVTHWLTPSYHPQVNNSERVNRVITAAIRATIKANHKTWAENI
FT                 HDIANAIRNASHESTKHTPYFLTFGRNIISDGREYETLEDSKANEHTISPE
FT                 QKKLLYDEVRKNLQNAYQKQARYYNLRSNSKAPKYQVGERVLKKTTFLSDK
FT                 GKNFCAKLAPRYTEATVTRVLGDSYELADNSGKRIGIFHATFLKKF"
XX
SQ   Sequence 6940 BP; 2426 A; 1211 C; 1361 G; 1942 T; 0 other;
     ttggcgccca acgcaaaaat aattgtccaa ttatcactga atttatttta tatttaaata        60
     ctattttgat cacacatacg attgcgaaaa cttttagcgt tattttacag ttttctttca       120
     caatatacat agttaggttt aatatatttt ttgtatcata gtaggtttta aggtgaattt       180
     caggatatta atgagaatta cattagatta tagaattatt gtattatttt tccattaatt       240
     tatcatttac ataaattgtt ggaaaactaa aattgaattc taatcctcat gtttcattgt       300
     ttttttttta cattgaatta aataattttc tatattgaat tggttgaact ggtttctttt       360
     gtatatattt tttcagttaa tcttttgttt tttctttttc ttctctttct ttcaattaaa       420
     ccatattttg tttcaaattg aattgaaagt gattcattat tgataaagtt aaattttatt       480
     tgaattgttg ataattaact acgattgatt ttttttttat tatataacat atttttcttg       540
     cacaattcaa ataaaaaata aaatcaaaat ggtaaggtat tatattcttc cgaatgcgga       600
     tcatttaacc gaagaggaga tgaattttga gctcactctt aggaatgttc aaattgacga       660
     gaatgctaag cttgaagata aaacaagagc attgagatat gcattcaaga cacaacgaat       720
     ggagccaaaa ctgtacgata ctggcctttc tatagttgaa gaagcaaaaa cacttgaaaa       780
     aacaattaaa tcgttaaaaa aaagtttaag ggaaacattc gattatgtcg tagtttcccg       840
     acttaggcat tatttaatta gattggcatc agctagcgca gagaaagagg atgagaagga       900
     gttgaaaacg gagtgttgta aagagattga agaaattatg cgagcctaca ggcaaagagt       960
     aacatatgac ccagaccatt caaatgatga aacagatcaa gatttaggtg agggggcgaa      1020
     gggtttgaag gactcctgga ggaatcccaa cccacaagct ttagctcaaa cagcgaatct      1080
     taatcgaaat attattagag acaaagatgg aaaaagtaga acaggtactt ggccaaaaga      1140
     caacatagga aaagatggaa aaggaagagg atttttctcg gacagatcat tgcgcgataa      1200
     agatgaaaaa caagaaattg aagtagacaa aacacatggg aatcatacac cgcatggtgg      1260
     atcgacgaaa cgagtagaaa gaacagagaa acaatcatct tacaaacacg aagctagaaa      1320
     tcacagtgtg aaaagtaaaa ataaaaaaca atatgagaaa aatcgggcat gctattcaga      1380
     gacagattat tcagattcca gtgttagtga aaaaactgga gatagttgga agaagagaaa      1440
     tataaaaagt caccataggt cgagaggcag gtgttcaaca acctcatcga gttacagcag      1500
     tacagatgaa gaggaagagc gaggggaatg ggatagatat cgaaattcgt ctcgaagatc      1560
     gataacaccc caaagacgat ttagaagctt cagagacgat ttttatagat cgcgatctag      1620
     agtagaaaat tgggatattg tatttagcgg cgacgctaga tcaatgcagg tagaggactt      1680
     tttgaatagg gtaaaaaaac tggctaagca tgagcgagta ggaaaaaaag agttgttaga      1740
     tagaatccat tataaattga agggagaggc tagcgactgg tggttcacca gagagaacta      1800
     ctgtacttca tgggataaat ttgagagcga aattagattc aggtttggta atcctaacag      1860
     agatcggggg atacgtgcac agctaagaga gttacgacaa aaaagggggg aaacatttgt      1920
     ggcatttgtt acagaggtgg aaaaattaaa tcaatgtctc aaacacccac attcatcccg      1980
     cacaatcttt gagatcgtat gggaaaacat gcgcccccat tatagatcta agttagctac      2040
     aacacgggtg cgcaaccttg agcatttgtt agatttaaac catcgcatcg atgcaactga      2100
     cttaagtctt tatcgatccg gtaataattt acgaaatgag atacacaata ttgatgcaca      2160
     aagctgttct gaggaagaaa actcgtcgtt cgaggaatac gctataaacg ctcttcaacg      2220
     caaaccaaaa gtaacaaaag aaacccaaaa atcaagcact acaccaagca ctcaactacc      2280
     tacaagaact gatactgcga ctgtaaaatg ctggaattgt caaaaatcag ggcaccattg      2340
     gcgaacttgc acggaagcca aactgatctt ctgctatgca tgtggaaacc ttggtcgtac      2400
     cacgaggaca tgcgaacgca atcaccaaca attacatttt tccaaccaaa atgttaataa      2460
     tgaacattcg ttaaactaga tgcgggatgt accgtttgga acccgtccat ctcgcaatcg      2520
     atcgaagtgg ttccagaacc caacatctct ctaaactttc aaaaatatca agaaacccta      2580
     cacattaggg taaatcccaa catatgtccc aaaatacgtg tctcaatttt cgacactgaa      2640
     atcattgcac tactggactc aggggccagc attagtgtat tgaattccac taaaactgtt      2700
     gaaaaacatg gcctaaaagt ttttaaagct acggttacaa ttagtacagc cgacaacacg      2760
     gaacacgaat gcattggtta tgcaaatgtt ccctacacat ttgcaggtac tactaagatc      2820
     atccctacaa taatagttcc tgcactctca aagagtctta ttttaggaat ggatttttgg      2880
     cacgccttcg gtataagacc aatgataaaa tgtaaaaatc agttggctga ggtagattta      2940
     ttagacatga atggtcagcc gatgatcaat ttgattaccc caaatgtagg tatggatgta      3000
     gagtcgaacg aaaacgaacc agaaatatgt cttaaaatat gttcattaga gttgacagag      3060
     aatgaaacaa tcatcgccca caaggccaaa cccgaagacg atgaatcgtt agaattacca      3120
     tctttagaac tttcaaatga ccctgaatta gaaatcgaca taatagaaac cgaacacgag      3180
     ctaaccgaaa tagagaaact acagctgaag gaaacgctta aatgttttaa ttggacaagt      3240
     gagagaaagc taggacgaac taatttaatt gaacatgaaa ttgaaataat tgaaggtgcc      3300
     agaatgaggg atttaccaat gtacaaatac tcgccaaaag tgtgggaaag catagaaaag      3360
     gaactagaaa gatatgaaat gttagacgtg atcgaggagt gtactagtga gtatgccagt      3420
     cctttagtgc ctgttaaaaa atctaacggc caaattcgag tgtgcttgga ttccaggaaa      3480
     attaattcgg tcacaaagaa agacgcgtat ccaatgcgca atatgaacga aatattccac      3540
     aggctacaga aagccaaata ctttagcata atagatttaa aggatgctta ctttcaagtt      3600
     ccattaaaag agagctctag aaattataca gcattcagga caccgaaggg gctttttaga      3660
     ttcaaggtcg tcccattcgg tttaaaaaat gctccgttta caatgagcag actcatgaat      3720
     aaggctatgg ggtttgacct tgagccctat gtattcattt atctggatga catagttata      3780
     gcgacagaga cccttgaaga tcactttcga ctgttgaaag aggtggccaa acgtttagcc      3840
     agagccggat taaccatctc agttcaaaaa agtcgatttt gcaggcgcca ggttaaatat      3900
     ttgggatatc tcttaacaga aaacgggcta gctatcgatg gatccaaatt ggagcccata      3960
     ctaaattacc cacgacccaa atctatcaga gatgtgagaa gactcatggg attgattggg      4020
     ttttaccaaa aatttgttaa caactacagc cacattacca cgccgattac agatttgtta      4080
     aaaaaatcta agaaatttaa gtggactacg gaagctgaac aagctttgga tcagttaaaa      4140
     tctgtattaa catcttcgcc agtgctggca aatccccgtt acgaccttcc gtttattatc      4200
     gagaccgacg catcacagct ggcagttggg gcggccctgt tacaggacca tcctgaagga      4260
     aaacgaataa ttgcctatta tagtaaaaaa ctctccagta cgcaacgcaa atatgcagca      4320
     actgaaaaag aatgtttagc ggttttattg gcaatagaaa actttcgcca ttatattgag      4380
     ggtagtagtt ttaaagtaat tacggacgcg aagagcatta catggctgtt tacaatcact      4440
     gctgcgaacg gtaattctcg attgcttcgc tgggccctaa aattacagtc ctatgatttt      4500
     agtatacaat atagaaaggg caaagataac gtgctggctg actgtctatc acgcattgaa      4560
     acagttcaaa tagtagacga tgattatgta aatctgcgta ctcagattgc taatgaccca      4620
     gaaaaataca aagagttcaa aatagtggga aatagaattt tcaaatttgt ccaaaatact      4680
     accaaagttg aggataaaag gtttctctgg aagtactacc ccccaaaaca agatcgaatc      4740
     gaaattatta aaagtgcaca tgaacctgct catttcggtt acgagaagac cattttgaag      4800
     ttaaaagaga aatacttttg gccaggtatg gccatagaaa ccaaacgatt ctgtaaggca      4860
     tgcacacctt gcaaaacctc aaagagtact aatgttaaca gtataccccc gatgggatcc      4920
     cagaagccaa attgcaatca cccttggcag tttttaactt tagattatct gggccctttt      4980
     ccaccgtctg gcaaggcgcg gaatacatgc ctccttgtcg taacagatgt gttcacgaaa      5040
     tttgtactca ttcaaccatt taagcaagca acagcttcta ctctcgtaaa atttctcgag      5100
     caatcaattt tcttactttt tggtgtccct cagaccatcc tcacggacaa cgggagccaa      5160
     tttacttcca atctatttaa aagtttatta gagcattatg gagtaacaca ttggctcacg      5220
     ccatcctatc acccacaggt gaacaactct gaaagggtca atagagtaat aacggctgct      5280
     attagggcta caatcaaggc aaatcataaa acatgggctg aaaatatcca tgacatagca      5340
     aatgctatca ggaatgcttc acatgaatcc acgaaacata ccccatattt cttaacattt      5400
     gggcgaaaca ttatttctga cggtcgtgag tatgaaacgc tcgaagatag caaagctaac      5460
     gaacatacaa tttcccctga gcagaaaaag cttttgtatg acgaggttcg aaaaaatctc      5520
     cagaatgcgt accagaaaca agcgaggtat tataatttaa ggtcaaactc gaaggcacct      5580
     aaatatcagg tcggagaacg agttctcaag aaaactacct tcttatccga taaagggaaa      5640
     aatttctgtg ccaagctggc tcctagatac acggaagcaa ctgtaacaag agtgctaggg      5700
     gacagctatg aactagcaga taactcagga aaacgtatag gaatcttcca tgcgaccttc      5760
     ctcaaaaagt tttagagaac agaaaaaggt gattaagcta tgaattcatc actacgataa      5820
     ttacaaaagg ctaaaattgt ctgcaaaaac acgtctgaac ttcggtttca ataaaacggt      5880
     catcaaaata aacactaaag tcgattttta ttctatcagc attcatttct gcaatcattg      5940
     cacacaagag aataaacaaa atttacacag aactgttcgc gttaacattc actttcatgt      6000
     tgaattatgt tgacgataga tgacttgatt tacacataga tgaactcgta gcataaatcg      6060
     atagtgagca gcaataggat ccatgttata ttcatctgta ggtatgtgtt cgtaaaacat      6120
     acttttcgtg ttcatgggtt gattggtatg ccgtgatgaa aatcgtatat tgtagagcta      6180
     ttcattcaaa ttttatctgt aaatagaaac aaattaatta gtagtaaccg tatttagtag      6240
     tttagataaa tactccccgg gtttattaag ataatcagtc aaatttcgaa gattttcttg      6300
     cagctccatt gtaaaaacgt tcttatccac ttttctcttg ttgcttttgt cagtttgaca      6360
     cttagatgct ttagcagctc tgtcaaaact agcgcagggg tggacatgat gctgtcagtt      6420
     ttgatgcgat gttttttctt gactaaaagc agtcacaggg agggctgtga tgacataata      6480
     ttttattagt gttggtcaac acaaggttga tgtggtagaa tattatgaat ctcagttatt      6540
     tacgtatatg tgctgagatc aacaaattgt caaaattagt ttgatgtagt tgatatgcag      6600
     ccgatttgaa gagtatagtt atcactttac aaaacaagtc gaatcaagat cgatgcagta      6660
     aaggatgcat atatctgtta tgagttttac gttctattta cgttctctaa gttaaagcta      6720
     tagaagggtt ggaaatggtc caatagggta gctattttgt aaatattgca acgataacga      6780
     gacagctgaa attccacgca gcgttaggtt tatagagttg agaaattcag tgttattaca      6840
     attggacaga tttgttattt caaaatattt catttatttg ggttatgaaa atttgatcaa      6900
     tctcacattg atcaaatttt cataaaactg cgtgatgtga                            6940
//
ID   Gypsy-694_AA-LTR repbase;    DNA;    INV; 1643 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-694_;
KW   Gypsy-694_AA-I; Gypsy-694_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1643
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1643
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2109-2109 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1643 BP; 442 A; 350 C; 319 G; 532 T; 0 other;
     tgtaacgttc tccgtctttt cgtctaaaag tcttttgttt ttttttatat atatatcttt        60
     gtttatcaaa tttcataata tgtttttttc tgtaaatatg taaataaacg aggcaaactg       120
     atttgaaata tttataaaag caccagtaca acaattttgg tttgctataa ttttatagca       180
     acttttgata attttaagaa ccattcacat atcagccgaa tattttatat tttttgtaca       240
     gaagcttttt aggataaaag cttagtagta aagtaactta aatgtagatg gcccatgaat       300
     tcaataatct cgtctaatat tgtttaaatg tatgtgtaag tgttaactgt cagaatatat       360
     gactaagcat tctaaagcat gaagattaca ttttctcaaa tctttactca cttttaaatc       420
     gtcttggctg aagagtggaa gcaagttcgg tgaataattt acgtttttat ttgattcgaa       480
     ggttagtcag aagtgcaaag tgaataaaaa tcttgaagtg aatttaggtg cagtatagtg       540
     aacattaatt taatttaact tttcttttct tttgacgaac aatagttttt tgattaattt       600
     ttcacgcgga acaaaggctc tgctctcgag caattattta tcgtacaaaa ggtaattctt       660
     ttctttgaat tcatttattc tattatattc ctaatcggag attcattgga cagcagcgtc       720
     cgattgacgc tttttgtacg ggctaaaaag ctctacggcc tttttcggcc attactactc       780
     cacgaggtgg acatctggac cgtgcaggcc cgccattacg gtagccaaac gggtatagag       840
     gccctccgac ctgccgagaa tccggagaag gttcattccg tcacggtggt cgcgtagtcc       900
     cgaaggcgaa gaccagttgg aggcacgttg gccttctacg agaggagacg gtagagtatc       960
     ggacatcagc cattgcccat acccgcaact ttacttcggc ctatcacgca cgtgtgcccc      1020
     tcccggcgac gcttctgccg aggagtcggg gtgtttcctg aaacgcatgg ttcggacacc      1080
     cgctgcagcc ggtacccagt gctgaacatc acgcgacgtc gctacacccc tgccggttcg      1140
     ctcagctgcc agcattaaca taaatcctga tcaggtatgt cgttaaccat ggccatgtca      1200
     ctcacactac aacactcaca cttacacctt acacataaat gaattacccg aaaaaatgaa      1260
     tacaatacat aaatgaattc aatctaaatt acgttttgcg tttattagtt cattcgctac      1320
     cgatccctga ggttagttcg tccacccagg attatcttga gtcacgtgtc gtcgatctta      1380
     gttcgctcac gtttttgttc tacgttcact ttactgcttc ggtgcgttca cttccgattc      1440
     attcgctttg aatttcgaca gccagttttt gcattgtata cctcggaacc gttcgatcat      1500
     tttccctagt agattgcgct catgctttat aagcttagtc gggcaactta acaaaacacg      1560
     accagtggtc tctctatatg agagtggcgc ggaagccact gcgtttgcgg catttctctt      1620
     agacgattcg acgaacggtt aca                                              1643
//
ID   Gypsy-695_AA-I repbase;    DNA;    INV; 6805 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-695_;
KW   Gypsy-695_AA-I; Gypsy-695_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6805
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6805
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2061-2061 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >99% similar to each other.
XX
SQ   Sequence 6805 BP; 2397 A; 1192 C; 1315 G; 1901 T; 0 other;
     ttggcgccca acgtaaaatt agatcaaatt gttactttga atattttttt tatttttggc        60
     ctggtccttt caaatagcta cattacatga aaattggatt acctttgtat ttttagcttc       120
     tttgaattcg aaacataatt aaccctttat attttttccc ctttttttaa tatatagtat       180
     atagtaagaa tttgaattga ccttttttga cctttgttta atttgaattt gagtctagtc       240
     tgcaaactga attttaggat tagggtagat tataggtata ggtttgaagt aattgatttt       300
     tttaatgtga tttttgaatt ttttactatt tttatttttg tttatttttt gaatttcctt       360
     gttacgcatt atgaaattgc taaatgagct ttaactctaa aggatattac attttctaca       420
     ttttcttttt gataaaaaaa aaatttcttt aaaagtattg gattttccaa gttttgtttt       480
     ccaattttat taattcaaat ttcattagta atcaagattc gtcgtacata tattttcgtt       540
     tattttttgc cattagcaag atggttcggt tttacattct tcccaatgct gaccatttgc       600
     tggaagaaga agttaatttt gaaattgctc tcagagaagt ccaagttgac cacgaagcaa       660
     gactggaaga taagaaaagg gcattgaggt atgcctataa cttggaacga aaggaaccta       720
     aacgatggag cacaaattta tcagttgtag aggaaattga aaagatagat gatatcctaa       780
     aatcactaaa acatagtttg agaagagaat ttgattatgc attagtctcg cgaattagac       840
     attatttgat gagatgcgct tcggcgggca caacaaatga agaagaggaa aaattgaaag       900
     aagaatattg taaagaaatt gaagagtttc ttcgcgcata taggcaaaga gtgacttatg       960
     atcctgagca atctaacgat gaaacagatt tggacttagg ggatggagct aaaggattgg      1020
     gctataaagg gtcttggaga aatccaaatc ccaatgctag agcccaaatg aaagtaggag      1080
     caaacaatac gggagcagtg cctaaaaaga aggaacagaa aaatgaaaaa gagcgaggtt      1140
     cagaaacaga caaaaacgat aggaaatcat ctaatgaaat cgatagcaca gggaatgaaa      1200
     aacagaaaaa taaaacaccg tccaaaaaat cacatgagaa atggaatgaa tataaataca      1260
     aaacaacaga tcagagattt caatcttatt cacgagataa agccaagata agaaacagtt      1320
     catactgttc tttgtccgaa tactcaagta ctaatgatga acgcgagttt gaacacgaaa      1380
     gagaatttca ctcatacaat aggcacagaa aatcaagagg tagatcaaat tctagctcac      1440
     tgagtagaag tagtagagat cgagaggtag gaagaagaag acaaagagaa agattttcat      1500
     ataggtcacc ttcacccttg aggaggagaa gttataggga ggactattat agatcatcac      1560
     ggtcaagggt tgaaaattgg gacattgttt tcagtggaga tgggagatcg atgcaggtag      1620
     aagatttctt aaatagagta aagaagttag cgaaacacga aagagtagga aagacggaat      1680
     tattggacaa aatacattac aagctaaaag gagaagcaag tgactggtgg ttcacgcgtg      1740
     aaagccactg caccacatgg gataaattcg aaagtgagat caggttccga tttggtaacc      1800
     ctaaccggga ccgtggaatt cgaagtcaat taagagagct taggcagaaa aagggggaaa      1860
     cttttgtagc atttgttaca gaagtagaaa aattaaacca atgcttaaaa catcctcatt      1920
     cgtcccgaac tatttttgaa atagtatggg aaaacatgag accacactac aggtctaagt      1980
     tagcaaccac aagggttaaa aatctggaac atttgttaga cttgaatcat cgtatagatg      2040
     cgaatgatag tagcctttat cgatcggcgt ataatatgcg caatgaaatg cataacattg      2100
     acgcaaaaag caattcagat agtgagtatt cgtctttaga agaccaggtt gtaaatgcac      2160
     tacaaagaaa acttaaattg aaggatgctc aaacactgaa ttcaaatgct agaaccaaaa      2220
     gtattgcaat taccgaccaa tccacactaa aatgctggaa ttgccaaaaa ataggacatc      2280
     attggcgatt ttgcaaagaa acaaaattaa tattttgcta cgcatgtgga aacatcggtc      2340
     gaacaaccaa aacatgcgaa cgaaatcacc cgcagacaac gaatgctcaa aatcacccaa      2400
     accaatcgtt aaactagatg cggggtgcac agggaacccg tccatctcgc aagcacagaa      2460
     agcggttcca aaaaccctcc aaaactatca aaaataccac gaaacattgc acattagagt      2520
     aaaccccaac acatgcccaa gaatacgtgt gtccattttt gacacagata taatagcact      2580
     gttggattcg ggtgccagca taagtgtgtt gaattcaacc aaactcctcg ataaacataa      2640
     tttaaaactc ttcaacgcaa aggttgtcat tagtacagcg gataacacgg aacatgaatg      2700
     tctcggttat gctaatgtac cttatactta tgctggagtt accaaagtaa tacccactat      2760
     aattgtccct cagttgtcca aatccttaat tttagggatg gatttttgga atgctttcca      2820
     aataaaaccg atgattaaaa acaacgaaag gataactgat gtcgaccttt tagatacaaa      2880
     cggtcagtcc gtgataaacc ttatttcctc gaaccagcga ccatatctag tcagcttgga      2940
     atctgaaata tgcttaaaga tatgctcgtt agagttgaca gataaagaaa acattcttac      3000
     acataagtcg caaccagaac tagatgaatc tctggacgtg ccttccttag aattgccagg      3060
     ggatcctgaa aaggacattg agtcaattga aactgagcac gaacttacga gctacgaaaa      3120
     agagcagcta actgaagtct taaaacattt caaatggact agtgagaaca acttaggtaa      3180
     aacaacattg atcgaacacg aaatagaagt aatcgaaggg gctaacatgc gcgatatgcc      3240
     catgtacaaa tattcaccaa aggtttggga aagtattgaa aaggagttag agcgctatga      3300
     gaaactaggt gtaattgaag aatgcacgag tgaatatgct agtccgttgg ttcctgtaaa      3360
     aaaaccaaac ggcagtatta gagtatgttt agactcgcgt aaaattaatt ctattaccag      3420
     aaaagacgca tatcctatgc gtaatatgaa tgagattttt cacaggttaa aaaaagctaa      3480
     atacttcagc ataattgatt tgaaagatgc ttatttccaa atcccgttga aggaaacctc      3540
     gagaaactat actgctttcc gtacacctaa gggccttttc cggttcaagg ttgtaccctt      3600
     cgggttacga aatgctccct ttacaatgag taggcttatg aataaggcca tgggttttga      3660
     tcttgagccg cacgtgttta tctacttaga tgacatcgta gtagccaccg agacgttgga      3720
     agaacacttc cttcttctta aggaagtggc caaaagattg gcaaaggcag gcctaacaat      3780
     ctcaatacaa aagagtcgat tttgcagacg acaggttaag taccttgggt attttctcac      3840
     ggagaatggc ctggcaatag atggtagtaa actagaacct attctaaatt atccacggcc      3900
     aaggtccatt cgagacgtta gacggctcat gggcctgatg ggtttttatc aaaagttcat      3960
     aaaaaactat agtcatatta caacaccaat tactgaccta ttaaaaaaat caaaaaaatt      4020
     caaatggacc gaggaggctg aaggcgcact cgaagaatta aagtcagcac taacatcttc      4080
     accggtgctg gcgaaccctc gctacgacct accttttata attgagaccg atgcatcaca      4140
     gctggcagta ggcgctgcgc tactgcaaga acaccctgaa ggtaaaagaa taattgctta      4200
     ttttagcaag aaacattcaa gtacacagcg taaatattca gccacagaga aagaatgtct      4260
     tgcggtttta ttggcgattg aaaactttag gcactacata gagggcactg ccttcactat      4320
     aataacagat gcaaaaagta tcacctggct tttcaccatt acagcggcca acggtaattc      4380
     tagactactt cgttgggcac taaaactaca gtcttatgac tttgtaatac agtatagaaa      4440
     aggtacagat aatgtattgg ctgattgctt atctagaatc gaggcaattc aaatagtgga      4500
     taccgaatat gccgagttac gcaagaaaat tctagacgac cctcaaaaat attccgattt      4560
     tagaatcatc ggtgagaaaa tttttaaatt tgttcaagat tcctctaaaa ttgaggataa      4620
     acgattcttc tggaaattct accctccaaa aggagaaaga aatggaatta ttgaagcaat      4680
     gcatgagcca gctcatttgg gctatgacaa aactctagcc aaactaaaag aaaagttctt      4740
     ctggccccaa atggccttag atactaaaaa gtattgtaaa tcttgtgtgc cttgcaaaac      4800
     agctaaaagc gtgaatgtaa acaacaaacc tccgatgggt tcgcaaaagc aaaactgcga      4860
     ccacccatgg cagtttctaa cgttggatta cctgggtcca tttccaccat cggggaaatc      4920
     tcaaagtacc tgcttactgg tggttacaga tgttttcact aaatttattc tggtgcaacc      4980
     cttcaagcag gcaacagcat gttcactggt caaatttttg gagcaatcga tatttttgtt      5040
     gttcggtgtt ccacaaacta ttttaacaga taatggcagc caattcacat ctaaactatt      5100
     caaaaatctg ctagagcact atggagttac tcattggtta acaccgtcat atcacccaca      5160
     ggtgaacaac tctgaaagag tcaaccgtgt gataactaca gcaattagag cttcaataaa      5220
     gtccaatcac aagacgtggg cagaaaatat tcaaaatatt gccaatgcta ttagaaactc      5280
     agtccacgga tcaacaaaac acagtccgta ctttcttacg tttggtagaa acatagtttc      5340
     ggatggacga gaatatgagt caattggctt agacaatcaa aattccttaa cacatgacga      5400
     acagattcgg ttgtacgctc aggtgcgcaa gaatctaaaa gacgcatacg aaaaacaggc      5460
     aaaatattac aaccttaggt caaatgcaaa agcaccgaaa tatagcattg gtgaaaaagt      5520
     gctcaagaaa accacttttc tgtccgataa aggaaaacat ttctgtgcca aattagctcc      5580
     caggtacaca gaagcaaccg taactaaagt ccttggtgac agctacgagt tggctgatga      5640
     atttggcaaa tgtttaggaa tctttcatgc tacgtttctg aaaaaattct gaacgatcga      5700
     tggcgaaaag ctacgaaata gtggcatggg tgttgctttt tacgatggga catttcctta      5760
     taaacacgta tggacttcca ctaaaacggc aagttgaaaa ccactcactt tcacttttat      5820
     tttgtaaata atacatagca taatcactca gaagtaaaca tacgaaaata aaacacacac      5880
     cttcacaagg ttctatagca tagtttcaaa aagcacacat tcaaaggcac tcagttagaa      5940
     taggtgtgaa taagattcat ccataaaatg catgtttgta tccatagcat agattttctt      6000
     cattccaaga cgccatagtt atttaggttt gtcgagtaga aatatagcca tttttacctg      6060
     tgaatatata gaaaacttag cacaacaata aaggaatgga atcaaaatat actctccagg      6120
     gtaatcggta aatttcacta cttgctttcg ctaaaaggct ccaggtccgt gcaaaacaca      6180
     ttttcagtag aaacccttct tctttctggt tgacaagccg ttcaaattca tcgctctgtc      6240
     ataagtagca cagagtggaa ctctacactt ttggttgttt atgcgatgtt tttatagcat      6300
     ggtttggctg ttataatgaa tcgtattgat gaatgccata acttttgccg atttattgtc      6360
     gacaaaaaga cgttgacgtg gaaatttgtt atggctttgc gttcaatttg tttcttcgtt      6420
     tatgaactac tgaatcaatg ttttggtcga tatgacaatc gacgggttga tttgtagttt      6480
     tttatgccta tgttttctta aaaacgagtt tcgatattgt aatttcgata tggtaataag      6540
     aagcatttgc tgattaaaag ctaaattttc gttaatggtt gtctactaat aagttggaaa      6600
     aggatccaat gataaagaca aatattttca tttattaatt cgtagagttc aattcaaagc      6660
     gaaagtgaca gaacaaaaaa aaaatagttc aaagtaacat aaattattta ccaattacca      6720
     gtataaatga ttagattaaa tttaaggtta tgaaaatttg atcaatcgca tattgatcaa      6780
     attttcataa aagtaagtgg tgtga                                            6805
//
ID   Gypsy-695_AA-LTR repbase;    DNA;    INV; 1448 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-695_;
KW   Gypsy-695_AA-I; Gypsy-695_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1448
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1448
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2110-2110 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1448 BP; 388 A; 316 C; 293 G; 451 T; 0 other;
     tgtaacgttt tttgaatttc aacaaagatt tcacgaacca ttcacattct cacatgcgtt        60
     gctataaaag agtgctataa aaattcaaat tttcgtgtga aagcttttag caattattta       120
     gtacttaaaa tagttttagg atttattata gatggctcat caactttgac atattggtca       180
     actgtggttc tcgtataaat ttattgaatt ggttgttgta aaggtcgaag acaattacat       240
     tataattttg aaggtctttc gaacatctta gagatataat ccctcatttc tccatctacg       300
     tcggcttagg gcagaagtta gttgcagtga tatttcagtt attccgttta gttcaaggtg       360
     tgttaaagaa gagaatagta taaaagaaat tagaaaatgg ttcttataag tggtcaaagt       420
     gaacagcgtt taatgatatc cttcttgcat tttttatttg atccagtgaa atttatgttc       480
     cggctcttac atcaccggca gcgaaaactc tgctctcgag ctttgtttaa ttattacaaa       540
     aggtaattta atttgtgaat tcattttcgt ataaggttct aataatcttt tcatgtcgga       600
     ttattagcgt ccggcagacg ctttttatct tgggcttaag ccctttacat tattcacccg       660
     ccatcttgcg gaatccagcc tacaccctac acgtggtttc ttcccggagt ggatctcgcc       720
     ttggcccgcc aaaattggta gtcaaacggg gccgagtgaa ttgactggcc tgcctgcgtt       780
     cgttgggtag agtaccggtc ctgccgacac ctccgccccg catctgtagt tcggccgttt       840
     gagaagcgag tattcccggt ggcacgaccg ccgatcggcg ctgagctctg acgccgccat       900
     aaagaactcc gacgagacag cgttctgggt acatcgcagc tcactggtgt gcccctcggc       960
     tgatgaaccg gtaccgccga aaccgctcaa cataaaatcc tgcgcaggta tgtgtacgat      1020
     catggccatg cacacaacac aacacctaca cttacacagt cactcacgtt tttttatgaa      1080
     aagatgaacg aatatacata atgaatacaa cataaattac ctctctttac attcatttaa      1140
     cgctgagccc tgtggttaat aagttcgctg gatcatctta cgttgcgttt ataggctttc      1200
     actttgatca cgtttacctt gcacccgttt cttcaggcgt gtccacctcg tgaccctatt      1260
     caaagttgtt gaccatctat ttgcgtaaat ccaataaccg tttgacaaac ccgtaagaag      1320
     agctctcctg cttcaaataa ctagtcgggc aagacaatta tgacatgacc agtggtctct      1380
     cggaatagag agtggcgcat aagtcactgt gtttgcagtc ttttgagcga gatttacaga      1440
     cggttaca                                                               1448
//
ID   Gypsy-696_AA-I repbase;    DNA;    INV; 8257 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-696_;
KW   Gypsy-696_AA-I; Gypsy-696_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8257
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8257
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2062-2062 (2021).
XX
DR   [2] (Consensus)
XX
CC   Consensus, LTRs are >98% similar to each other.
XX
SQ   Sequence 8257 BP; 2527 A; 1521 C; 1959 G; 2185 T; 65 other;
     aaggtaawtt ttagacttta aatttgkgtt ttgacwaatt gcgccattcg cgttggactt        60
     tccagcgctt aggcgctttt tgtattacgg gctggtttga gagtttcgac aagtggagtc       120
     agtttggggt tcaaacgtgg cgtctccagc gccatcatcg tgaagcattc gagctcggga       180
     tccactaagg cccgccgtaa aggtagctaa acggagggag gtgaagttcg tcaacccttc       240
     gaacgaaata ctccgacggt cgccaaaaac cgtcgtaagt tcaccctacg ctacaacccc       300
     ggtgaacgga gtccgagagc gcgatccccg tacgtagcca attaacgtac gccggatcgg       360
     accaagtctg aaggtgacgg gttcatttca tcgcgtgcgg tcagagcccc aaggcaaagc       420
     cgtgcgaagg tacgttggcc ttgaccctga agaggcggtc aaaccccggg aagcacgaca       480
     atccgtcgtt gcggctctcg aagaagacca aatcggaagc mttccgtcca gcctccacct       540
     cctccgcaac gttaattcgg ccatactmcc cgagctcaga cmcttcgtcg ctgccgccat       600
     tacagcagcg tcagcggaca agcaacgttc ccgccattgc tccgaggagc gatcaaacga       660
     csaccgtcct tcgccggcaa ccgccggata cgtcagmcgt cwtcgagtca ccgaaaatcc       720
     tgcgcaggta cgtggaaacc tttttcatgg ccatgatagt ttcccttaat acccgtcagt       780
     aaataggtcc aacccgaatg agtttccgts aataaagagt agttgaagtt ccgaaagccg       840
     attgattttc cgttttgggc aattcgaaga attcaccctt ttacagacmt wtagctttcc       900
     gttttctggt aggttggcct ttcagacttc caaactccat ttaggktmmg wtcgggttga       960
     acgagtttaa ggtcttgkgg taaaskgttt gtgggtcgaa gggaagttag gaggttcgtc      1020
     aaggtgaggg agaagwtwgw aaagccgttc acgagtcccc tgagggaaaa gtctcaaagt      1080
     agtcgggcaa agttggaaac gaccggtggt ctctcggttt ccgggagtgg cgcctaagcc      1140
     accgagttta mgcaaaacct cgtggawttt gaacggttac atttggcgcc caacgtcaaa      1200
     atttcagtaa aattttattg cagttgattc aattgaatcg aaacacattt wagtagcatt      1260
     gcagcattaa atttgaattt catttatttt ttttttttcg gtcgagtttg aatttatagt      1320
     acgttgaatt agaattttat agtggttttt attttatatt ttgctwactt gaatttttat      1380
     agtaaattga wttttttata gtgatttgaa tttgaatttt taggttaagt agcgcgtaag      1440
     gaatttgaat tttcaggtta cggttgaatt cggtatttta ctttcgttta tttttttcct      1500
     stttttaatt gtacatttat ttttatttga attgaattaa tattgaattt catttgaatt      1560
     agaataaatt kggaaaatga gtggtccgta catttcaccg gaagccgagc acttgctggc      1620
     tgacgaagtg gattttgatt tgaagcttcg tggacaatta gtcgatcgta gagagacttt      1680
     ggaggacwaa caaagattct tacgtcggtt gttgaaagag gagaagaaat cgaaagtagg      1740
     gtgtagagga aaacatcttt tcagaaacga aatcgaaaat ataaacagca aggtccggtt      1800
     aattcgcgcg gagttaaata aaaagtttga tcgagcgtta atttcaagat tacgacatta      1860
     tttgatccgk gcacaaagtg caattgtgga aaacgaggag gagaagacaa gtcaaattga      1920
     tatttgtagg aaaatagagg aaattttkaa atcttttgat caaagaatat ttatggaaac      1980
     tgaggaggcg ttgaaagatc ctgttgatcc acagcagatt caggaaggaa tgaaaaatac      2040
     aactagcatc agtwaagata aggaaattga agatgaggaa aaggaagatg agttggaaga      2100
     agagaagaag aaggagttag aagcagaatg gaaagaattc atagtttgga agcaagagaa      2160
     gttaattaas gaggctaaag cgagtcgtag atcaaatgga gataaagtga ackttgatga      2220
     aaggccaccg gggagtcata agagccggaa gtctcgttca gttagtagag attcaagcga      2280
     gkttkgtgac agacggtcgc cggagcgcga taagaaccga aagtcactta gggagtttgt      2340
     gaaaamgggt aatttggata gaaacaaggt tgatagmtgg ccgccgkagk gcaataagag      2400
     ccggaaatca cggakaagta wtagtagaga aaggaggmat aaacgcttta gttcagagag      2460
     tagtgtagaa cgacaaagac gaggaagttc gaaaggaaaa ttagggaaat atgcgcgtga      2520
     tgactcagaa gattcagata gtggcggtag aaaattgaag aatgatcgga aaagtgaccg      2580
     tcacaggaga aaccgcggat actcgtcatc gtcaagcgaa tcagagtaca gtaggaaaca      2640
     atacaggaaa tcaagagtag agaattggga tctcaacttt tcaggagaca gtaggtcaat      2700
     ccaggttgaa gatttcctca atcgaattca gaaattggct cgacatgaag gagtcagcaa      2760
     ggatgaattg ctcatgaaca tkcatcgtag attgaaggga gaagcgtatg actggtggtt      2820
     tacgagagaa tctcatctca ccagctggaa acgattcgag catgaaattc gattcaggta      2880
     cggaaatccg aatagagatc gaggaataag agcacagata agggagctga agcaaaggaa      2940
     aggtgagact ttcattgctt atgtgacgga ggtcgagaaa ttaaatcaat gtttgcagcg      3000
     tcctttttcg tcaaggacat tgtttgagtt gatatgggag aacatgcgcc cgcattatcg      3060
     ctcaaaatta tcggttctwg atattgaaga tttagatgat ctaatcgaga tcaatcacaa      3120
     aattgatgcg aatgatcctg gcttttatag gacgaaccag ggcaacagga acgatcttca      3180
     tcacctcgag gtggagagcg actactcgag tcatgaagat gaaccggtat acaacatgaa      3240
     gtctggccag cgaggtgtaa aaccagcaac accaactaag actaaacagg aagcgcagta      3300
     tcagaagcca tcgacggacc gtgcttctca acaaccacag ccaaacaaaa gttcaactgt      3360
     agtatgttgg aactgtcgaa agactggtca cattttcaga gaatgtagaa gcccaaagca      3420
     gatattttgt tttgcctgtg gaaatgtagg gaaaacaaca aggacttgcg acagagatca      3480
     ttccttttta agccgtcaga ggcagcagaa caaccgttcg acaaactaga tgcgaggtgt      3540
     ttgaagggga atccaaccat ctcgcggact gaaggtattc ccgaacgcaa tgatttagga      3600
     cattttgaaa actctgtttt agaagtcaga gtaaatccta gctcatgtcc tcatattaaa      3660
     gttagtatat tggggacaga agtcgtagca ctattagact ctggagctgg actcagtgta      3720
     atgagcgctc ttaacattgt ggaatctcat ggtttaagaa tattgaagag caacgttaaa      3780
     atatgtactg cggatgacac agagcataca tgtttaggat atgttaacgt accctataca      3840
     ctgggtaatg aaacgagagt tgttccaacg ctaatcgtac cagagattag aaagccacta      3900
     attctaggca tgaatttttg gaaggcattc caaataaggc ctatgataac ttctaagaat      3960
     cggattgaag agttggaatt gacttggaca tcggatttga aggagaaatc agtgataaat      4020
     tatctccgag tcgaagaaga agttgttatg gatggtgaac cgattaactt ttcagttcat      4080
     ctggtggaga cttcggaaga gccacagatc atgatatctm aacctgaaga agacgaaacc      4140
     ttagatattc cgactttgga tttgcctcag aatccacagg aagcaatcga taacattgag      4200
     acggaacacg aacttactcc agagcagagg actmaattga aaaaagttct tagtggtttt      4260
     gattgtacca gcgaaggmcg actgggcaaa acaacactaa ttgagcatga aattgaggtc      4320
     atagaaggga caaagatgag ggagttgcca atgtaccggt attcacctca aatatgggag      4380
     aaaattgaga aggagcttga acggtggaag gaattggatg taatagagga atgtgttacg      4440
     gaattttcca atcctttggt ccccgtcaag aaagcaaacg gkaagataag ggtttgtctt      4500
     gactcaagga gggtcaacac gatcaccaag aaggacgcat acccaatgcg aaatatgtcg      4560
     gagattttcc atcgtctcca aaaggccaaa tatttcagcg ttgtggattt gaaagacgct      4620
     tactttcaaa taccactaaa ggaaagttcg cgaaattata cagcatttcg cacaccgaaa      4680
     ggacttttca ggttcaaggt tgtgccattt ggcctcaaaa atgcaccttt tacaatgacg      4740
     agattaatga atcgagcaat tggttttgat ttagagccaa aagtatttat ttatctcgac      4800
     gatattatta ttattagtga aacttttgag gaacatctat atctcctgaa ggaagtcgct      4860
     gctaggctca ggaaggcagg actgacaatt tcagtagaga aaagccggtt ttgcagaaaa      4920
     caggttcggt atttagggta tttgcttact gaaaacggtc taagtattga gagttccaaa      4980
     ttggaaccaa ttttgaacta ccctagaccg aagactgtaa gggaagtccg gagattaatg      5040
     ggacttatgg gattttacca aaaatttatc ccacggtaca gtcaccttac tgcaccaata      5100
     accgatttat tgaagaagtc gaagaagttc agatggtcgg atgaagcaga agaggcactg      5160
     acgcaattaa aagcagtcct cacttcagcg ccagttttag gaaacccgga ttatacacgc      5220
     ccattcatta tagaaacgga cgcatcgcag ctagcagttg gcgcagcttt attacaggaa      5280
     tttgacgaag gaaaacggat tataggttat tttagcaaaa aactatctag cacacaacgc      5340
     aagtattcag caactgaacg agagtgctta ggagtacttc tagcagtgga aaatttcagg      5400
     cactacattg aaggttctac atttaccgtc ataaccgatg ctaaaagtat cacatggcta      5460
     ttctcgctct cagctgccaa cgctaattca aggttattgc gttgggcact gaagcttcaa      5520
     tcatatgatt tcacactaca atatcggaaa ggcaaggaca acattctagc cgattgtttg      5580
     tccaggatag aaacagttac ctgtgtagac caagaatatg agaaacttgt ggaccaaatc      5640
     acaaaggatc cgattaactt taagcagttt atggtcaaag gagaccgcat ctataagtac      5700
     gtggttgaca ctaacaagtt caccgatcga cgctatgagt ggaaatatta tccacccacg      5760
     caagagcggg atggaataat gcgtaccata catgaaccag cgcatcttgg gtacgacaag      5820
     acgctaaatt ctctaaaaga gaagttttat tggcctagaa tggccacgga cacaaaagag      5880
     ttttgtaggt cttgcttacc gtgcaaaacg tcaaaagcaa cgaacgttaa ccctacccca      5940
     cccatgggat cacagaaaaa gttttgcgat catccttggc aactaattac attggattat      6000
     gttggaccat ttccgccgtc tggaaagggc agaagcacct gtctgttagt tttgacagat      6060
     gtgttcacaa aattcgtttt ggtgcaacct tttcgtcaag caacagcatc gactttggtg      6120
     caatttttgg agcaggcagt atttttgttg ttcggtgtac cggaaatgat tttgaccgac      6180
     aatggtaccc aattcacttc caaggaattc gctaatttat tacagcacta tggagtgaag      6240
     cactggttga ctccatcgta tcaccctcag gtgaacaaca ccgaaagagt taacagggta      6300
     atcactacwg ccataagggc aaccataaaa ggcagtcatc ggaactggtc ggataatttg      6360
     cagcaaattg ctaatgcgat tcgtacatcg gttcacgaat ctacaaaata tactccgtac      6420
     tttttaacat tcgggagaaa tcaggtatcg aatggtaagg agtatgaaag aatgcgaaca      6480
     acaaacacta aagatgccac aagcaattta accaatactg atagggaaaa actttaccaa      6540
     caggttcgaa agaacttagc mgaagcatat caaaagcaaa gcaaatacta caatttgaga      6600
     tctaatagta aagcaccatc gtatcaatta ggagagaagg tacttaagcg taatacgcta      6660
     ctttcggaca aagccaaagg ctattgtgcc aaattagggg caaaatttgt gccagcaatt      6720
     gtaaagaaag tattaggaga tagctatgaa ttggaagacc taaacggtaa tccattaggc      6780
     atatttcatg ccaattttct waagaaattt tagaattgat ggataatcaa gctatgacat      6840
     aatcccgtag gaaaatgtac caagtgaaac tttcgttcca cacaaaaaac acatcaatga      6900
     tggcaattag cgaaaagaac taaagctaga gttagtttac ataaatttcc tagccttaca      6960
     ataattcaaa tctacttact gactatgtaa atgttaaatc tatattagta ataaaagagg      7020
     gatagttcga aagttataag tttaaaaaaa gcactcacca gttttttttt ccgtttgtca      7080
     tcattcgaca ttcgggtcgc cgggatgatt ttattgcgcc gtagtgtttc cgcttccgcg      7140
     tccggtacgg acaggagtgt gagagtggga acacggagtg gtacgtcgcg acgtccactc      7200
     ccacactacc tgggtacatt cccggggaag aagwtccgca ctcccgttct cgtcgcgcgt      7260
     tgaggttakg gttggwsatc cgtcggacat cagcgccgtc gtggatgcgt tggacatcag      7320
     ctccgtcgtc gcgttgwtgc tggtggctca gttgctgggt gacgtcccgc katcctggga      7380
     gcgctcctgg gcggacgcat gscggcttct ccggcggaag agttgtcacc cgcgtggtga      7440
     ttgccwtcgc gttttttacg wgcgcaaacg tctgcgccgw tcttcggwwt ccctcgctga      7500
     cgatctgaaa agaaataaaa cacaaagcaa attattctta ttttggaggg gaagtgataa      7560
     ttaatactcc ccccgtttaa aattttcggt agaaatttca ctttttttca ctgcacacgc      7620
     gccgcgtcac attcactcga gtcggattga aagtaaacat tgaatcgcag tctttccgtt      7680
     tctttttcta tgcgttccga caggtgacag atgacagtgc gatgttttcg cacgtcgcgc      7740
     gttgacagtg cgatgaattt gttaacctgt cagttcggtt ttgctgcatg ggtcgatgtt      7800
     cagtttgatg agaatagagt tgtgcgattc tttaagtagc aaattctggt gtcggaaaga      7860
     gatccgaatt ttgaatttgt ttaagttttc ggttttgttt aggagaaaca ggtgttaggt      7920
     cagacaatgg tttctgatga atcctgttga ttctattttg agcagtttga ttgcaaaagt      7980
     gtcaaataat gatttgatga ggcaatcgac tgtgattttt cgtaatgatt agcaatgttg      8040
     acgaacgtgg ttcgttgtgc tgatcgttag tttcgtcgtg gtaacacaaa ctctattacc      8100
     atctactgaa aattgaaccg tcgtattgag ttttggttta gattgtttca actgcagaag      8160
     atgttttact tttggtattt gaagattatg tattttatga gttatgaaaa tttgatcagt      8220
     cttcctgatc aaattttcat aaaaccaggt ggtgtga                               8257
//
ID   Gypsy-696_AA-LTR repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-696_;
KW   Gypsy-696_AA-I; Gypsy-696_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-733
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-733
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2111-2111 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 733 BP; 212 A; 96 C; 148 G; 277 T; 0 other;
     tgtaacgttg ggacgttttt ttctttttaa gcaaaataat tttgctttga attcgttgat        60
     ttcaagataa tattttgaat tttagtttaa attgaattaa cagaaaaacg gtttgacgtt       120
     tttctctttt taagtaaaat tatagtttga aattgttaaa aaacatttgt aaaattaaat       180
     aactatttgt aaatatcgac gaaaagtatc ttggattgag ttttgaattc tcattttgac       240
     tttgcctcat gggaacgtga aatagaaact gtatgtaatt ggtttgtgtc taggctaaat       300
     gtatgccata aaaagacgta gtgagtgcag taatggctcc tgaatatatg taactcatat       360
     acaccatctt gacgaaccta cagaagcgct aagatcgcca ttcgaaagat tcgttggcgc       420
     gattctgtag acaaaaaggg gattgtttaa tgtaggtttc tttaaggaaa aatgacttaa       480
     gctcgttcat ttcgttctat acaaggctgg agattagaag ttatcgcggt tttctagttc       540
     gtttgtgaat tttctattct gtgcccttcg ataacgtacc gaaggtaatt tgtgtaaaac       600
     ggtgaatttt agtgaagtgt ttaaaacggt tttttgtgtc ttttgtgtat ttgtagtaaa       660
     ttgtacgtgt ttccggtcgt tttgaccgtg gtcccgcgaa tcttctattc gtgcttgaga       720
     ttattcgtac aaa                                                          733
//
ID   Gypsy-697_AA-I repbase;    DNA;    INV; 7004 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-697_;
KW   Gypsy-697_AA-I; Gypsy-697_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7004
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7004
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (28-DEC-2018).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 7004 BP; 2657 A; 1068 C; 1378 G; 1901 T; 0 other;
     ttggcgccca actttctaaa aagctttaac ccacttgaat tacatatttg aatttgatcg        60
     acttgaagcg tattttggtt tcatgttaga tatagtagtt taagattatt attttaggaa       120
     actgattcga gcacgtaggt taagggaact ttgaattttg gatttttatt aatatttaaa       180
     ttaagggtta tttggtgaag gttatttttt tttatatatt gatttcaagt taacagattt       240
     caaaaaaaat aaggcttgga tttgtttatt gatagtattt tactcatttt cttactacat       300
     atcattttca tatagatttt taaaatagca aagtggtaca tattttcctt aaaaataaca       360
     gaaacaagaa caaaacttta aaaaatggca aaagcgataa atacaagcgt aataaatgct       420
     ttcgacttaa gcgaagaaga attagactac gaattaaaaa ttagaaactt gttgaaaatg       480
     gaatcagaac tacataaacg agaacgactt agaaatgcct ttaggaatga acgccaagca       540
     cctcgtgaag taattgaaga caggtatttt gttgatgaat ggccattggc ttctagaaaa       600
     ttggaagaaa ttgaaatggg acttaaagca gacatccatg ttaagtggat atcacaattg       660
     agacactgga aagagcgggt gtacagatca catactgttg atttagcaca agaggagcaa       720
     aagtttgaag taatcaggac tattgaaaga ttgatgaaaa tttacaaaga cactgctaga       780
     agactaatga acttaagcga tttggaagag gatagtattg aactatctca agattcaaaa       840
     tcaaatagag gggtcaaaaa agaaagtaaa atacaagagc aaaagatatt caacgaacag       900
     gtcagatttc atagtagttt ggctaatcaa gccaagatta atcatgagaa ccctctgaag       960
     gaaaaggcta aaacaatcgg aaactatttc aaaaaattac caaatattag aaatcttcag      1020
     ttgaatcaac aggatgatga tcaggataaa caggatataa gtgaataccc agtaaacgat      1080
     tacagacggt taggtgctat tccaaaacac aaaaagtggg aatatgtaga agaggaatca      1140
     aataagaagc aaaacaaacc caaaaaacag gcaaagaaat cgaaaagcaa atacatagct      1200
     aaatcatcgt cgtctgagga cgaaagctcg tcattggact ctctaagtag tttattatca      1260
     tctgaatcta gcccagaatc agaattccag ggaagctctg atcgaagatt tgtttcaagt      1320
     cgtcgagagg accggttcca acactatcgc ttagatagat ggggaattca attcagtggc      1380
     gattctcaag gcatggacgt atccgatttt gtgttccaag ttaacgaatt aatcgcgtct      1440
     gaacggatcc caaatgatag atttttggat caggcatata ttcttttttc tggagaggct      1500
     cgtcgttggt actttaccta taaaaagatg tacaagaact ggaataactt ttccaagcat      1560
     ctaaaaattc gttttggaga tccgaataag gatagaaagt tgcttcaaga tatcaaggat      1620
     aggaagcaga aaaaaggaga gtcttttgtt gccttttgcg cagaaattga aggaatgttt      1680
     gagcggatga ccaaacaata ttctgaacgg aaaaggctta aagtcttaag aaataacatg      1740
     cgtaggtggt acaagacaaa actaacgttt tataaaatta aaaatattgc acatctcagc      1800
     atgctttgtc agcagttgga caaggacagt gggagaattt actcaaaaac tgttcaaccg      1860
     tttaagaaac atgtaaggaa tatcgaagcc tcttcagaat cttccacgac atcttcagat      1920
     gatgtggaga tatgtgcatt cgagcgcagg gatagatatg aaaggaagga aaagtcaaaa      1980
     tttcctcctc agaaagcagg agaggcgtct ggtttcaaag atactttgaa agaaccagtc      2040
     gctttgtgct ggaactgtag aaaatatggg catcgctggc gagattgcaa gcaacccaag      2100
     ctcattttct gtcatgcatg cggaacaccg ggtgtaacgt ttcaaacttg tccgagaagt      2160
     cacatgattc ctcaacaaaa tccaaaaaac gagaattcgg aagagaattg aggggtgttt      2220
     cttttcctga taatttcagc ccccagaaag gggaaaaatc taatgtaaat agcgaaattt      2280
     atgaacttct ggtagaaccc aagaaatgtc tatatataaa aatcaatata gtggactcgg      2340
     tagttcatgc attgctggac tccggagccg aaatatcggt aatgaattct ttagatataa      2400
     taaaaaaata taattttaaa gttcataaaa cgaaactgaa agtagatacc gcaggtaaga      2460
     gtagttacag atgcattggt tttgccaatc ttcccataac ttatgaagaa ataactaaag      2520
     tcattagggt gtacattgtg tccgagtttt caaaacaatt gattctagga ataaactttt      2580
     ggaaggcgtt cgaaattgta cctgcaatca ggtcgagtag taatcaaatc cacgcgatac      2640
     aaaatctgtc agaaatccat ttaacagaca ctctaaattt tactgagaac tacttcagtg      2700
     aagaaaatga aaaagttatt ctcaaattta ataattttgt cggaacaatg gaggaaacca      2760
     tgagtgatga ggaggacctt tctcttgaga ttccaacctt agattttgaa gtccaaccac      2820
     tacagagtat tgaaactgaa cactctctga acgacctaga aagaacgcaa ttgctaggcg      2880
     ctataagcaa atttgaagtt tcagaagaaa ataagatagg aagaactaac attctcgaac      2940
     atgaaattaa attgattcct ggggaggagt tgaaaccatc tccgatgtac aggtgttctc      3000
     cgtatattca aaaatttgtt gacgaggaaa tcgaaaggat gaaacttatg gacgtaattg      3060
     agccatgtga atctgagtat gcaagcccct tacttccaat aaaaaaatca aatgggaaat      3120
     ttagagtatg cctagattcc cgtcgcgtca attcggcaac gaaaaatgac gcatacccaa      3180
     tgcctcattt acatgaaatc ctacatagaa tcgaacaagc aaaatacttc agtgtgatcg      3240
     acttaaaaga agcatactgg cagataccgc tggccgagaa ttcacgaaat tttactgcgt      3300
     tcaaaacaaa taagggccta tttagatttc aagtgatgcc cttcgggttg aagggtgccc      3360
     cattcactat ggcgaaactg atgaacctaa cattaggcag tgatttgcag ccattcgtat      3420
     gggtatattt agatgacatc atcatcgcga caaaaacact agaccaacac atccaactaa      3480
     ttgaagaagt agcaaaaaga ttgaaaaaag caaacttaac gattagtctc gcgaaatcga      3540
     aattttgtag gcaaagcgtg agatacttag ggtatgtagt ttcagatcaa ggaatttcca      3600
     ttgatatgga aaaaatcagg ccaattttag attatcagcc acccaggaca gttaaggaaa      3660
     cccgtcgatt gctaggactt gcgaattttt atcaaaaatt tataagaaat tatggtgata      3720
     ttacagctcc aattacagag cttctgggaa aagataaaaa gcaatttctg tggacttctg      3780
     aggctggaaa agcattagat aaacttaaag aagcgctgat tagtcctcca attctggcaa      3840
     acccagattt taaacaaata tttaccattg agtcagacgc ctctgatctg gcagtagggg      3900
     cagtattgac ccaaatacaa aatggagaga aacgcgtaat agcgtatttc agcaagaagt      3960
     taaactcgac cagaaggaaa tacgcagcgg tcgaaaaaga atgcctagca gttctatggg      4020
     ctatagaagc atttagaaac tacgtagaag gaactcattt tagggtcata accgatgccc      4080
     gcagcttagt atggttatcg aaggttagcg cagaaaaagg ctcagcaaag ttatgtaggt      4140
     gggcgttaaa acttcaacag tttgatttta gtatcgaata caggaaagga agagagaaca      4200
     taactgcaga ctgtttatca aggtctctca acaccatttc aactaaatgg gaggacttgg      4260
     aacataaagc tttaagggaa aagatcaaag aaaagccaaa cgaattcaag gactttaaag      4320
     tgattgatga caaaatcttt aaatacgtca aaaatgaagc aaaaatcaca gataataggt      4380
     ttgaatggaa gattattccc actttagaac agagggttga cttaatcaag aaaacccatg      4440
     atgaagcgca tctgggcttc gataaaacct taaacaaaat tagagaaaaa tacacctggc      4500
     cccttatgta cactgaaatt aaaaagtatt gtaatgcatg catagcatgc aaaacatcca      4560
     aatcggataa cattaatcac actcctccaa taggaaagca gaaacttgcg acacaacctt      4620
     ggcaaatatt ggcgattgat tacgttggtc catttcccag agcgaaaaag accggaaaca      4680
     cttgtcttct ggtaattact gacattttta ctaaattcgt cttaattcag cctttaaaag      4740
     aagcgaaaac gaaacaatta gttttctttc tagagaacat ggttttcctt ttattcggag      4800
     tgccggaggt agttgtatcg gacaacgggg ctcaatttat ttctaaggag ttcaaaagtc      4860
     tattggaaaa atatggggtt agtcaatggc tgacaccagt ttactttccg caggtaaaca      4920
     atgcggaacg aacaaaccgg gtaataactt cagcaatcag atctctaatt aaaaaagaac      4980
     aagatcactg ggacgaagat atttacaaaa ttgcacatgc aataaataat gcagaacatg      5040
     tatctagtgg cttttcccct tattttgtta attttggtag aaatcaaata agttcgggtg      5100
     aagaatatca aaatctaagg gatgcaaata gtgatttaac tccgtcagaa aagcagcatt      5160
     cagaaaaaat gaccaaaatc ttcgaaaaag ttagaattaa tttaaaggta gcatatgaca      5220
     aatatgcaaa gtattataac ctaagagctg gtaaaaacat tgaatttcga gagggcgaga      5280
     gagtgttgaa aaagaatcat tttttatcgg acaaatcaaa agcgttcaat gcaaaattag      5340
     ctccaaaatt ttcggaggcg gtaattaaaa gaaaagtaga agacgtttgc tatatattaa      5400
     gcgatttaaa aggaaaatca ttaggcctgt accacgtctc tcaattgaaa aagctgtaag      5460
     aagaaaaaca acaagctatg tacataaact aagtgagtag atcgagaatc tcagcattaa      5520
     aatacgaaaa atcggaaaga gcaaataatg caatacaaaa atatatgaga agatattaac      5580
     gaaaaatcaa acaaaactgc attatatgcg aaattttgaa aaaaaggaag gtaaaattat      5640
     aataatgata aaaaaaaaga aaaacaacaa aaaatttaac tctaaatttg aatgaaaaga      5700
     gaaatttgga acaaatcaga aaaaaaacaa aggagagaac ttaaaaatat aaattgaatt      5760
     gagaatatgt ggaaagattg aatgaatgat gtgaagctat gtacacaaac aaagtttagc      5820
     gatttaaaca aaaaaatacg ctttgtcgaa aaaaaaaatg catgctcgga gtagatgcaa      5880
     tgtactataa aagtggaata atttgttgaa taataactga aacctagaag aatgacaaaa      5940
     acttaccaaa aactacgaac attgcatgcc taagagttca atttttgcat acaattgatc      6000
     ttctcaaagg ttcgtgctaa aaataaaatt taaggattgt aaatatgtaa atatataaca      6060
     aaatagtaga attaaaataa ataaactttg gatcttttaa taaaaaggta acaaatgttt      6120
     tgaaaataat gatttatttt tgtgtttggt gactcagaat ctaaactata gaaacggagt      6180
     acatccaata cacttacata tttgttggag atatgtttct gtataagtta acattacata      6240
     tatataatct atctataagt tgatataaaa ataatattaa aaaatccaag tagcagagta      6300
     acattttgaa gtaggatgaa gttagaatac aaaatactta catttttggt aaagctgata      6360
     gatttttcaa tccaatgtca tttaaattta acaactgcaa tagcccggct tacaaattca      6420
     tttgacatac gcaatagact gcggagcgaa ctgcacgcat tgacatacat gtttcaacta      6480
     taacgatcaa cccttcaaag aggcaataac taaggtactc agcagcaata gttaggaacc      6540
     cgagaggaac gtgcaagtaa atagggagag gttcggtgta gtgagatccg attatatttc      6600
     catattgtca tatggtggat aactttggta ggtacatttt ttcaagacca atacgattac      6660
     gcattaagga gtatcgtttt tgagtgttcg ggatatgtac aatagagttt ggttatgagt      6720
     ttaccagtag atgtactgga gtaaataatg agattataga tgccaatagg tttattggag      6780
     taattagatc agttagtgtc gaacaatgat cctgaaagca cggatctcgg gtacttttaa      6840
     attatcgtct agtgatagac tcagatattc ggtttcgcgt tcggttaaat tagtgaatgt      6900
     taaatattta aagtcaaatt ttaagtgcag gaagaagaga cagttaacaa ggtattgtag      6960
     aaaaaaaaat gtttcgcatt ttttttggga taagtggggg atga                       7004
//
ID   Gypsy-697_AA-LTR repbase;    DNA;    INV; 1955 BP.
XX
AC   .
XX
DT   28-DEC-2018 (Rel. 26.04, Created)
DT   28-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-697_;
KW   Gypsy-697_AA-I; Gypsy-697_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1955
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1955
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2112-2112 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1955 BP; 619 A; 386 C; 442 G; 508 T; 0 other;
     tgaaacgggc gtctgatcgt cgtttcatag acatccctaa attgcaaata atttcgcgcc        60
     tattaggtag gcaacctagt gtacgtgctc gaatcagggt ctcgtgaaaa agtttcatag       120
     ccgaaattat tcagccgatc aataggaaga aaattggaaa caaaaacaat attttcaaga       180
     aagttttgga ccggaattaa aaggaaattt ctggaaatca gaggtctgaa ggtctggaca       240
     agatctttac cagttctttc cagttcagac cgccgaagca taaagttata aagtgaactt       300
     atttcaagtg attaaaacct atttaaagtg attgctagta atattagatt taaaagaaaa       360
     caacaaggaa aagttaatta atttaattta ttttaaaagc tatttacaga aataagttga       420
     gggttaaaac cagttcattt aaaatcgtga gtgaagttgt acgggaaaat tattgattgt       480
     aagcacattg tttgaaaaaa aaaaacagaa taacaaatat gaaagctaat tatgaatttc       540
     tgtaggaaaa gtacgtgagt gtgaacctaa aaaaatatta aagaaaacta gctgaaaagt       600
     gaaaagcagt aacgtgaggt aaattcagga aaatcatttg gtgtgttggg ggtgctaata       660
     gtgtttattt cacagtcacc gcatgtgacc gcgtggagca ttggggttgt ggattagcct       720
     cggagcttcg gagaggagga gagctgccaa acaacctcgc ttagtgcacg agcagctctt       780
     gcacctgacg ctctcagtat tggtgcctaa ttcgatcgga ctagggcgat cccctggagg       840
     cactcttcgt ctcgtggctt cgtgccgcta agggtgtccc cagagtgcgt ggtcaacgga       900
     tggaaggatt cggcctcgcg tgaaccacat cgctacacgt ggttctgtac gaacgcgaga       960
     ggtctgactg gggaaggaaa accacagcca gcgagattcg ccccacactc acgtcccggg      1020
     ttcaaagggt ccatggtcaa caatagcccg atcgtctcct actcccaccc caccatcgga      1080
     gaaacagcat tggtgttatt cgtgctctcc acacgcgaga gataccacaa gagttagcgt      1140
     cgtgttttgc atccaacacc acgccggcgt cgcaccgatc cctgttcagg aggcattggt      1200
     caagctacgc tctcgtcaac taccaccagg aagatcatca catcagccga ttgtgatcca      1260
     gaagcccgtc ggtcgcagca cgaagatcga cgccgttgcc ggccactaga ccgtcggcta      1320
     gccggtagac caggtaactc accgagacaa gactgtaagt acctggccaa acttattgag      1380
     catgagcacc cttacaccaa tctctggaga aatgatctcg aattgtatta gtagggtata      1440
     agctaatgag aagtaactca cgtactcaag attttatgaa aactcaaaag agtgacgtca      1500
     ctactcagat cagattagat atatttaact tatttccaca aacggatccg ttcacagata      1560
     gcgttaggca aaatctgttt tactcaatta aaacctcggc ttagaaatga aaatagtttt      1620
     taaataattt ctctattttt taaaggaatc gccaacaagg caataaaatt actttaaatt      1680
     ggttttgcaa taaacgagta taaaatgttg aataaaactt ttggaaatac taaggaataa      1740
     gtagatttga attactgaaa ttttggaaga tattttacct gcttgggaac ggagttttct      1800
     ggaaggttgt tgggaattat attaaggcgg attcatagga agcgttgggg aaaatttggc      1860
     tagcagggca aaaccgatct tgagttctag cagatgacta atgtcatctg gcgcataagc      1920
     tagatcttag aggcccttcc aggatccccc ttaca                                 1955
//
ID   Gypsy-698_AA-I repbase;    DNA;    INV; 5408 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-698_;
KW   Gypsy-698_AA-I; Gypsy-698_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5408
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5408
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (31-DEC-2018).
XX
CC   A sample sequence, LTRs are >98% similar to each other.
XX
SQ   Sequence 5408 BP; 1767 A; 906 C; 1174 G; 1561 T; 0 other;
     gtggcgacga gaaaagaaga attagtgcgt gagtaggtta cctcgagcgt cgattctttg        60
     gatttgggca gcacaccgcc atcgcagaaa caacatttgg cagccaaccc aacatcagct       120
     ctcacggtag gaaccgcaac acagaagtgg ccagagatat ttccttgaca cagcagaaac       180
     gagtcgtata gttgctgtat tgggaaatta aggagtaacg tgagtttatt agtaaaaaga       240
     gtgtgcaaag gcgcaatagt ttgagcttga aaatactatt tcagcgattg gtgtggcgtt       300
     accatctact atttctctat tccattgttt cagcgttcga ggagatatac aataactagt       360
     gaagggcttt tgttgagcgc taaatagaat tgcattgatt cctatagggt gaccagctca       420
     tccaaccctt tggtgacata attgcattta tcaagaaaat ttttttttac ttaattttat       480
     tttcacatac aaatacgaca gactattaag agtgtttcct tttattattt tcgaccaaat       540
     tagggtgcga agaagtacta aatagtgatc ctatcactcc caggtctgca agctgcatag       600
     gacttacatc gcaagcatag ttcgtttttt ttccatccga attcctcgat tgcggagaaa       660
     acgaacgaaa acgggctaaa ttggcgttat acctacggga ccggtggagg tctaaactat       720
     cagcatcagg gtcgactaag gtcgttgcat agaaaaggat ttattccggt aagtcaacca       780
     ttttattgat accattgaaa aatctaaaag gagcggacat tttcgcaatt tcagtaaacc       840
     tcagaaatct aattcaattg tttccttttt tttgttgttt ttcttttgtt gcaattttta       900
     atatttttgt cattgccctt ttggattcat tctattgaac aatagtccaa ataatttcac       960
     gttgcgttat actatttttc tattactgaa gatttgagtc taaacaaata gttctacatt      1020
     atgagcacaa atatggcttt cacaattgag ccttacaggc gaggtgcttc tttcaacgat      1080
     tggtacacac gtctgaagta tttctttcgt gtgaacaacg ttaaagaaga ggataaaatg      1140
     gcctatttta tcaccttaag tggacctaca atgtttgagg aaattaagct actttatccg      1200
     gctggtaatt ttgaagaagc tacttttgaa gacttgattt ctaagcttaa gaatcgcttg      1260
     gataaaattg aacctgacct cgtacaacgc tataaattta gcactagggt acaaaaccct      1320
     ggggaaacca cagaggattt tgtattagct ttgaaacttc aagccgaatt ttgtggcttc      1380
     aataacttta aagaaattgc tattttggat agacttattg cggggcttaa ggacaaaaat      1440
     ttgagacaac gtctcctagg ggaggagaag ctaactctaa caaacgctga gaagattatt      1500
     gcaacatggg aggtagcaag agctaatgcg ggagcaactg atgagcaaca taatgggagt      1560
     accgggcaag ttgcggctat tcaaaatgaa acgagtgggc attttggaag agtgtacgga      1620
     aggctgaggc agacattaga cttagcggat caatataggc agcaagaagt caatagggga      1680
     gccggaagca gccgaggatc cgtgaaaagt cgattgggta cgaagccata tggagggcaa      1740
     caagtacaga ggcagtacag cacgaaaacg gttaatttca gacaggacgg aggaaatttc      1800
     aggagacaaa ggccagacta ttcgcagatg atttgtaatt tctgtggaat gaaaggacac      1860
     ataaagaata aatgtttcaa actcaaaaat atggaaaggg atgccattaa tcttgtcgaa      1920
     tcttacaggc ctggttcttc ggccgacagg cacatcaatg agctaatgga acgattgaga      1980
     gcagatgatt ctgagggcga agagagtgac acaggtgatc tactatgtat gttagtgtcg      2040
     tctattaaca aaattagcaa tccttgttta atcaatgtga acgtggaagg taaagacctt      2100
     gaaatggaga tagactgtgg ctcttctgtt tcagtaatta gtaaaagtag atttttgtct      2160
     aaatttgacg ttccgttacg taagtacgga aaacagttga tagttgtaaa tggtgccaag      2220
     ctcaaaattg aaggagaggc aaaggtctca gtacaactta aaggtagaga agagtggtta      2280
     caactattgg ttcttgattg cgaaaatgat ttttacccgt tactaggtcg gacgtggcta      2340
     gatgtattct accctaattg gagaaacttt ttctcagatt ccttgagggt aaataattta      2400
     aatgacaatc ccagcaatat tacagtagaa gacatgaaga aaagatttag taaagttttt      2460
     gaaaaagatt ttggacaacc aattaacgga tttaaggcag aattagttct gaaagacgag      2520
     acacccattt tcaaaatggc ctatgaggtt ccctatagat tgagggatag agttgccgat      2580
     tatttagaca aattagagaa acagaaagtg attacaccga ttgatactag cgaatgggca      2640
     tcacctatta tcatagtttt aaaaaagaat aacgattttc gattagtaat tgattgtaag      2700
     gtatcaatca acaaatcgat attacccaat acatatcctt tacctacagc acaagatgtt      2760
     tttgcgaatt tatctggatg taatgtattt tgcgctcttg atttggaagg ggcatataca      2820
     caattagaac tgacggagag gtccaggaaa tttgttgtaa taaataccat gaaaggttta      2880
     tacatttata ataggctccc ccaaggcgct tcttcaagtg catctatatt ccaacaagtg      2940
     atggacaagg ttttacatgg catagagaat atttcttgtt atctggatga cgtattgatc      3000
     gctggtaaaa acatagacga atgtaggaag aagttagaac tagtgctaga caggttggca      3060
     aaggctaaca ttaaagttaa ttttgaaaaa tgtaaatttt ttgtatctga acttgttcat      3120
     ctagagcatg ttatatccaa ggatgggttg atgccctgtc cagataatat ttctacgatt      3180
     gagaaagcaa aagctcctaa aaatgagtca caacttaaat cgtacctagg tttgcttaac      3240
     tattatcata aattcatacc acatttatcg gcaaagttgt gttatctgta taatttattg      3300
     aaaaataatg tcaaattcgt gtgggatgat aactgtcaaa aagcatttga agagagtaag      3360
     gcgctgttga ttaacacaaa ttttttggaa ttttatgatc cacacaaggc gattgtggtg      3420
     atttcagatg cgtcaagcta tggcttaggg ggattgattg cccacgtagt cgatggtata      3480
     gaaaaaccga tcagttttac atccttttcg ttaaatgatg cacagaaaaa gtaccccatt      3540
     ttacacttag aagctttagc tttagtgtgc accattaaaa agtttcacaa atatttattt      3600
     gggcaacact tcatcgtgta tactgaccat aagccacttg ttggaatttt tggtaaagag      3660
     ggtaaaaatt ctatttatgt cactaggatc caacgtttta ttttggattt gtcgatatac      3720
     gattttgata ttgtgtatag accgtcaaat aagttaggaa acgctgattt ttgctctaga      3780
     tttccattac agcaggaagt tcctgatgaa ttagacaaag acgcaataaa aagcataaat      3840
     tttagtaaac cattaccaat tgatgcagct gttattgctg agtcaactaa aaatgatgaa      3900
     tacttacaga aaatcaaaga atttatgcat caaggttggc cgaaaagagt agagaagaaa      3960
     ttcgcggatg tttttgccaa ccaggaagat ttagaaatct tagacgattg tctcctttat      4020
     aaagatagag tgattatacc agccattcat caaaaacata ttttggagct tttacatgga      4080
     aatcatgcgg gaatagttaa aatgaaacag ctagccagaa atatggttta ctggttcgga      4140
     attaacaagg atatagaaca atatgtaaat agctgcatcg cctgcaatag tatggccatt      4200
     tcccataaac ccaaagaaat atccaactgg ataccaacaa ccaggccgtt tagtagggtt      4260
     cacatagact ttttcttttt cgagcaccgt actttcctac taatggtcga cagttactct      4320
     aaatgggtag aaatcgagtg gatgaagcaa ggtacagatt gttgtagttt tgcagagatt      4380
     ggtagctttt ttcgctagat ttggtctccc agatgttcta gtatcggaca atggtcctcc      4440
     tttcaactcc catggtttta tcagttttct cgagaggcaa ggcatcaagg tgatgaaaag      4500
     tccgccttat aacccctcta gcaacggaca ggccgagaga ctggttagga ccgtaaaaga      4560
     agtcctaaaa agatttttgt tagagagtgg gattgcggag ttagatctgg aagaccagat      4620
     aaatctcttt ttgataaact ttaggaacaa caatataacg agtgatggat attttccatc      4680
     tgagagaata tttgcttata aaccaaagac gcttttgggt ttagtaaacc cgaaaaatca      4740
     ttacaaaaaa cagctaacta taccgcagcc agaggatgaa ctcatccaac tagactcagg      4800
     cgggaaaatc ccgaggcatt ctaatgatgc attggataat ctgatggctg gggatgaagt      4860
     gtggtataga accaacaaac ctcacagtca aaccagatgg gtcaaagcct cttttagtaa      4920
     aaagtactct caaaatgtat tccaggtact tgttggaaac gtggccgtaa tggctcaccg      4980
     cagtcagctt aagcgatgca aagcggatct cgagtggtcc ttgccaaacg tagtgttgag      5040
     gaagctgcga gatgacgagt tacccaacca ggaactagag ggaacaacga gagttgacga      5100
     gaagcgaata gatgacaata ccggactatc ggagccgact ccaaagggag gtgtccgcag      5160
     caagaagaga aagttaccaa ctcaagagac tggatttgag ggtgtccggc ggtctaagcg      5220
     taccaagaag gaaaaacgag atgttgaata ctgttacgag ttctgatcct ggttccgaaa      5280
     atttgttcat caaagaactt tcgaatcgtt tatttaaaat attaattaag ttatgttgaa      5340
     tttgatccaa atattagttt taatacaaat tggctaaggc caacattcca actaaaaggg      5400
     ggaagaat                                                               5408
//
ID   Gypsy-698_AA-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-698_;
KW   Gypsy-698_AA-I; Gypsy-698_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-309
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-309
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2113-2113 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 309 BP; 87 A; 73 C; 56 G; 92 T; 1 other;
     tgttatacta gttaatgcat gcgcacaccc ctgcgctcgg aatttagtca tactgcaagt        60
     tgatacgtca acgatcgggt tttgatcggc cctcgatctg cgatcgagtg gtcgacgtaa       120
     aacagaacat gaaatataaa ttcagttgat ttctagacac ctaactaaca gcaagtgatt       180
     atttagtgcc ttcatatcac cgtgcttcac ctcggaactc aagtcctact tttctccaaa       240
     ctacatcttt cgggcttcat ctgttcgacg ggttttgwct attaaaagaa ccgatccaat       300
     aattcaaaa                                                               309
//
ID   Gypsy-699_AA-I repbase;    DNA;    INV; 4150 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-699_;
KW   Gypsy-699_AA-I; Gypsy-699_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4150
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4150
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (31-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 4150 BP; 1209 A; 912 C; 1079 G; 950 T; 0 other;
     attggcgacg cggacgggat tccggaatat agtttgaata cgccgtcgat tgaattcggt        60
     tgaaaatcgc gcggtattga ttgaattcgt cggaaataat atagtaagca aaagtaaaca       120
     aacagaagga gaacataacc ttatcagagt gaaaatgaat ccaattggaa cgggaatgct       180
     accgttcgat ccggacgata ccaccaacgt tagctcacgg tggaagaagt ggaaacgatc       240
     gttcgagatt ttttttggat gtgaataacg ttgcgttgcc gtcgcggaag aaatcgtacc       300
     tcttgcactt tgcgggggaa agtgttcaag atatctacgt tagcctggta ggagatcctg       360
     agccagctgt accggcggga tcggacgcat acaaggaagt cgtccaagtg ttggataacc       420
     acttcctgcc gatgaaatat ctgccgcaag aaagacacat cttccgtaat ctggagcaag       480
     gaccggacga gaaaattaca aaattcgttc ttcggctgag agaacaaggc aatttgtgtg       540
     actatgcgaa ctggctggat gaaaacataa aggagcaaat attcgaaaag ggaagatctg       600
     acgaactgcg tgctaaaatc ctcacgaaac ctaacatgac actggacgaa attgtcaagg       660
     agggccgttc gctagaaacg attgagagtg tccgtcagca gctgcaacgt tctgtggagg       720
     tgaacaaagt gaattcattc aagcaggagt gcttccgctg tggtcgtgtg ggacatttcg       780
     ccaacagtga gtcgtgtccg gcgaaggata agcgttgtga gaaatgcgga ttggtcggcc       840
     acttcaaacg ctgttgcaac accaaagtta gaagcaataa gcagaggaag gtgaatcaaa       900
     tcgacaagga atcagcggta ggaggagaag aagaactcta cgactcggat gactctgcca       960
     gtaatgctga tcaggaggaa gtaagctacg tttttgccgc tggaactgga agtctaggcg      1020
     gtgagaaggt gatttgcagt gtcggaggca ttaaaatcaa gtgggtcgtg gattcagggg      1080
     caggtgtgaa tgtaattgat tacaacacgt ggacctacct caaggaacag aaagtcaaca      1140
     ttctttcaca atccaagcag tgccagacaa ccctcaaagc ttacggtaac aatagcctca      1200
     aagttctcgg acagttcaaa acaagcatcg ccacgaggaa ccatgaagtc gttgctgatg      1260
     tgttcgtcgt tcaggaggaa ggagcgagtc tgctgagtaa gaacactgcc acacagttgc      1320
     aaatcttgaa aatcaacacg gatgtgtgga ctatcagcgc tgagaactgt aaaattggca      1380
     caatcaaagg aatcgaagtg aacctgcaga ttgatcttct agtgaagccg atccagatca      1440
     tcaagtgcca catcccgata cctttgcaag agaaggtcga gaaggaaatc aacacattgt      1500
     tggagcagga tattattgaa gtggcaccga ttgattcgcc ctggattttg cgactggttc      1560
     ttagcccgaa agctggagat ccgtcggccg tacgcctatg tgtggacatg cgtgccgcca      1620
     ataaggccat cgttcctcaa catttccctc tacctacttt cgaagacatt gttccacacc      1680
     tacatgactg caagtggttt tcgaaaatag atttgaacaa ggcttttcat caggtagttt      1740
     tggctcccga ttctcggttt gtaaccacat ttgccactca ccatggctat tatcgctaca      1800
     aacggctaac atttggtatg aactgcgcct ctgaagtgtt tcagagcatc atggaacgag      1860
     tgttgaaggg gattcctgga gtcaaagttt tcatagacga catcctagtc ttcgggtcca      1920
     caaaggaaca gcatgacatc gcactgaaag ccgttttgtg tcgtttggaa gagtacggaa      1980
     ttaccgttaa cccgaagaag tgttccctgg gaaaagcaga agtgacattt atggggcata      2040
     ttctttctgc ggatggaatt cgaccaacga tggacaaggt ggagacgatc aagcgattgc      2100
     gagaacccaa gaccactgaa gaactacgaa gcttcttggg gatgatcact tatcttggca      2160
     ggtttattcc agagttgtca aagttgactt ctccgctacg tggtctgctc agaaaggatt      2220
     cggtgttcaa ttggggctca gagcaacaag tggcgtttca aaaactgaag gatactctga      2280
     aagacccaaa gaaccttggt tactattctc cccgtgacaa gaccatcgta attgctgacg      2340
     ctggaccaac aggactcggt gcagtcctaa ttcaggagaa tgaagggcac aagagagtta      2400
     tttgctacat tagtaaaggg ctttctgatg ccgaaaaatc gtatgcccag aacgaaaagg      2460
     aggcgcttgc cttggtgtgg gccaccgaac gactgcagat ttacttgcgg ggcttgacat      2520
     tccttcttct tactgatcac gagccactga aagtaatctt tggaccaaat catgtgtctt      2580
     gtcccaggat tgatcggtgg gcaatgcgtc ttcaatcttt ccgatttacg gttatccaca      2640
     tcccaggaaa ggtgaacatc gccgatcccc tatcgaggtt gccgacatac acgaggtgca      2700
     agacgtatga ccagttcgga gaggaaacca tttttgctat ttttcaaaga gctgtgccta      2760
     ctgcattgac tacggaggac atcgttgacc atactaaatc ggacccggag ctggcgttgc      2820
     tgaaggaggc tctaaccacg ggccgttgga atgaaggagt gaagaagttt gcaccgttta      2880
     aggacgaact gtacggctgt cgtgaaatgc tactacgagg tgagagaata gttattccgg      2940
     gaaatctcca aaagcgcgtc ctgtccctag ctcatattgg acatcccgga atagagagat      3000
     ccaagcaaag actacgttcc aaagtgtggt ggccgtctat ggacaaggac gtcgagcatg      3060
     cagtacgcaa atgtctggat tgtcagatag taggcagagc cgctccacca gaaccgatgg      3120
     cgttaagaaa acttcctgag cacccttggg agtatcttag cattgatatt ttgggcccgc      3180
     tacccagcgg agaatcgctt ttggtgatca tcgattgcca cagtcggttc aaaatcgtgg      3240
     aaatattgag gcaaacgacg tccgccgata tcatcaataa gttgaagcca ttattcatga      3300
     gaatgggcct tccgtccatc ttgatgacgg acaatgcacg aaacttcacg agcaaggaac      3360
     tggaggattt ttgcaaggcg tttggaattc agctaaaacg gaccactcca tattggccgc      3420
     aggcgaacgg cgaggtggag cgccaaaatc gcgccctgct gaagattttg aggattgctg      3480
     aattaaacca tacggactgg aagcaaaatt tggaggagca caactacgtt tatgcgctaa      3540
     cgcctcatcc cgcaacgggg cgatcacctg ccgaacttgc ctttggtcgt cagtttcggg      3600
     actggatacc ccaactttcc agtgttcgaa accaagatga agaggccaag gataaagacg      3660
     cggtctacaa atatcaagca aagtgccaag tggatgcagc tagaggagct aaagagtccg      3720
     agattgacag aggtgaccag gtgctgatga aaaacatgca tccttcgaac aagctttctg      3780
     ccacgtttct cccaggacca gcgaaggtaa tcagtaagca aggcaattca gtcatcgtcg      3840
     aaaccccgga aggtgtgcgg taccttagaa actcatcgca tctcaagaag gtgcactccc      3900
     cggaaccgga aagatccaat tctacgagcg atgatgaaca tcaagactgg gctactccaa      3960
     cgacgatgga gaactcacct gtagcccagc gtgaagcagc agctaacccg caacagacga      4020
     cttcgagagc agcacaggag aattccccaa gacctgagag acatatcaag cgaccactac      4080
     gatttgatga ttatgtcctg gatgtcggtg ttaatagaga ctaaaggacc aagctgtaaa      4140
     aaggggaaat                                                             4150
//
ID   Gypsy-699_AA-LTR repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-699_;
KW   Gypsy-699_AA-I; Gypsy-699_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-154
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-154
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2114-2114 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 154 BP; 55 A; 15 C; 38 G; 46 T; 0 other;
     tgttatgatt ccaatatgta cccttaaggt aaatagtaga gagaaaggag ggagtttaga        60
     ttagagtgta acgaacggaa aggaaataaa gtaatgtgtt tttggaccgg gattaaattc       120
     gagtttatta cagttgttga atccgattac aaca                                   154
//
ID   Gypsy-69_AA-I repbase;    DNA;    INV; 4243 BP.
XX
AC   supercont1.165;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_AA_;
KW   Gypsy-69_AA-LTR; Gypsy-69_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.165; Positions 1823162 1827404.
XX
CC   Positions [3286-3813] - Integrase core
CC   'ACATG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1212
FT                 /product="Gypsy-69_AA-I_1p"
FT                 /translation="MAQNGQGQQQPLPEALAGAQAGPAMAAAPIINSGIPF
FT                 PTPLELSGNLRENIVNWKDTFENYLIASGVEFLEERVKVATFKSALGAEAR
FT                 KIFNLWPLQEHERNTVAACMESLSRNMIPQRNVKLARYEFYQCHQETGDDS
FT                 KPPESMTQFINRARELIKDCNFGAMEDEMLRDKIITGISDVPLKKRFIEQV
FT                 DLTATRVIQQCQTEEVTREEMMRNQWLDTQVHSINKVSGVKPKQKQCSFCG
FT                 RKYHSDLSDCPARGATCNFCGLKNHFAAACKNKKEQGSSGNSGTRMKKKVN
FT                 TLEAENNQAFGSENTESDEESVEMLQYLYEVKQEENDNLLALVLHSSMGTH
FT                 ASIRYDACWTQEHHAT"
FT   CDS           1233..3083
FT                 /product="Gypsy-69_AA-I_3p"
FT                 /translation="MNLLGTKHVRLDNDKAVFKVFGGERCKSIGRTEVDCV
FT                 HKGTPYKMVFHVVDFDQPPILSWKTCLNLKLLQVCFALSEEQKSTSKKILE
FT                 QFPDVFTGLGKLEGTIHLEVDENAKPTIQQPRRIAVTLVEELHQVLAEMEK
FT                 DGIIAPEKHHSDWVSNLILVKRNGKLRVCIDPIMLNKALKRPRYQMPTLDE
FT                 VLPELANAKLFTTVDARAGFWQIQLDDDSSRLTTCWTPFGRYKWLRMPMGI
FT                 TSAPEIFQLKAHEAIQGLRNVKALMDDFLIFGCGNTVAEAKADHDRNLEAF
FT                 LRRMREKNLKLNPDKIKLCQNSVRFFGHILTAEGVKPDSEKTSSITMMPIP
FT                 DDVAAVQRFLGMITYLSRYLPSLSTVAEPIRRLTWKDETWTWSRQQQDAFE
FT                 RLKKMISTAPVLRYFDATKNTVIQCDSSSVGLGAVLLQEGQPVVYASKTLS
FT                 ATERRYAQIEKETLAILLACRKFEMYILGRPKTIQTDHQPLVKIFHKPLSE
FT                 APLRIQRMILALQRYNITLQFTPGKEVIIADMLSRAAVESNDETSREIYDI
FT                 YGIESSNAVDFGRQSRADPQSITGGSRDAGHHAVYHQRLAGEMRRDSSKSE
FT                 SFLEIQIGAQHPQWIGIAM"
FT   CDS           2842..4200
FT                 /product="Gypsy-69_AA-I_2p"
FT                 /translation="MTKPVEKFTTSMESSQVMPWISDDKVEQIRKASQEDP
FT                 EMQAIMQYIINGWPARCDAIPANLKVFWKYKSELSTHNGLVLRCDRILVPH
FT                 SLRRDILERLHQSHSGIEATIQLAKDTVFWPGLRDQIRQRVQSCDVCAKYS
FT                 ASQSSQSMQSHLIPSYAYQKVSMDLCECDFESQKRIYLITVDHFSDYFDVD
FT                 ELRTPNTAAVIQACKKNFARFGVPQEVSSDGGPQFMSQEFIRFATLWDFKH
FT                 SVSAPFHQQANGKAESAVKIAKMLMKKAHESKQDFWKLLLQWRNTPNKVGC
FT                 SPVQRLLSRRTRFDVPMSEAKYSPKLQEGIKEKIVKCRQQAKLYYDRKTRR
FT                 LPDLEFGQPVFVKLKPSDKEWQRGTVVDPITDRSTIISVGEREYRRDNTCI
FT                 KPALPSYVSSKPKEPSSGPLEHPKTLEQSTPVAEQPMADIGRPKRIIRLPK
FT                 RFEDFEVS"
XX
SQ   Sequence 4243 BP; 1299 A; 947 C; 1024 G; 973 T; 0 other;
     tggtgtcagt acgggtgatt tttacttcaa aagaaatgtt tgctcttgcg aatcttgagt        60
     aacaagctct agtaagcaaa ccgcgagaac cgaactaata aacagttatt gtgaacagct       120
     cagcaacgaa tagtaatggc tcaaaacggc caaggtcagc aacaaccact gcccgaagcc       180
     ctagcagggg cacaagcagg accagcaatg gcggcagctc ccatcatcaa cagcggcatc       240
     ccattcccaa cgccactgga gctaagtggc aatctgagag agaacatcgt caattggaag       300
     gacacgtttg agaactatct cattgcttcc ggcgtggaat ttttggagga acgtgtcaaa       360
     gtggcgactt tcaagtcggc tttaggagca gaagcgagaa agattttcaa cttgtggcct       420
     ctccaggaac atgagagaaa tacggtagca gcgtgtatgg aatctctctc tcgaaatatg       480
     attccgcagc gtaacgtgaa gcttgctcgt tatgaatttt atcagtgtca tcaggaaact       540
     ggcgatgatt ccaaaccacc cgaatcgatg acgcagttca tcaaccgtgc acgagaactc       600
     attaaggact gcaactttgg tgccatggag gacgagatgc tccgggacaa gataattacc       660
     ggtatcagcg acgttcctct gaaaaaacgc ttcatcgaac aagtggatct tacagcaaca       720
     cgagtgatcc agcaatgcca aacagaagaa gtaacacgcg aagaaatgat gcggaaccag       780
     tggctcgata cacaggtaca ctcgatcaac aaagtatccg gtgtcaagcc taaacaaaag       840
     cagtgttcgt tttgtggaag gaaataccac agcgatctgt ctgactgtcc agcccgaggt       900
     gccacctgca acttctgtgg actgaaaaac cattttgcgg cagcgtgtaa gaataagaag       960
     gaacaaggaa gctccggaaa ttcaggaacg aggatgaaga agaaagttaa caccttggag      1020
     gcggaaaaca atcaggcttt tggatctgaa aatacggaaa gcgatgaaga atctgtggaa      1080
     atgttgcagt atctctacga agtgaagcag gaagaaaacg acaaccttct tgccctggta      1140
     ttacattcat cgatgggaac gcacgcaagc atcaggtacg atgcgtgctg gactcaggag      1200
     catcatgcaa cgtaatcgga aaaagcaacg tgatgaacct actcgggacg aagcatgtcc      1260
     ggctagacaa cgacaaagcg gttttcaagg tctttggtgg tgaaagatgt aaatctattg      1320
     gaagaaccga agtggactgc gtacacaaag gaactccata caagatggtg tttcacgtcg      1380
     tcgacttcga ccagccaccc attctgtcat ggaagacatg ccttaatctg aagcttcttc      1440
     aagtatgttt tgcactttcg gaggagcaaa aatcgacgtc gaagaaaatc cttgaacaat      1500
     tcccggacgt gttcaccggt ctgggaaagc tcgaaggcac tattcatttg gaggttgacg      1560
     aaaatgccaa gcccacaatt cagcagccac gccggattgc agtgacgctt gtggaggagc      1620
     ttcatcaagt tttagcggaa atggaaaagg acggtatcat tgcaccggaa aagcaccact      1680
     cagactgggt cagtaacctg atcctggtca agcggaacgg aaagttgagg gtatgtatcg      1740
     atcctattat gctaaataaa gctttgaaaa ggccgcgcta tcagatgcca acattagacg      1800
     aggttctgcc agaactggcc aatgcgaagt tgtttacgac tgtcgacgcc cgtgccggtt      1860
     tttggcaaat ccaactggat gatgatagtt caagactcac tacgtgttgg accccgtttg      1920
     gtcgttacaa gtggctacgg atgcctatgg ggatcacgtc tgcacccgaa attttccaac      1980
     ttaaagcaca cgaagccata caaggactgc ggaatgtcaa ggcgctgatg gacgattttt      2040
     tgattttcgg ttgcggtaat acagttgcag aagcaaaagc tgaccacgat agaaaccttg      2100
     aagcttttct ccggaggatg cgtgagaaga acctgaagct gaatccagat aaaataaagc      2160
     tttgccagaa cagtgttaga ttctttggcc acatcctaac ggcagaagga gtaaaaccgg      2220
     actcggaaaa aaccagcagt ataacgatga tgccaattcc agatgacgtc gcagctgttc      2280
     aaagattttt ggggatgatc acatatctgt ctcgttattt acctagcctc tccactgtag      2340
     ctgaaccaat ccgacgactt acctggaagg acgaaacatg gacatggtct cgtcagcaac      2400
     aagatgcttt tgagcgtcta aagaaaatga taagcacagc accagtactg cgatactttg      2460
     atgccacaaa aaataccgtg atccaatgcg acagtagcag cgtaggacta ggcgctgttc      2520
     ttctgcaaga aggtcagcca gtcgtctatg cgtcgaagac cttaagtgct actgaacgcc      2580
     gatatgcaca gattgaaaag gagactttgg caatccttct cgcatgtcga aaatttgaga      2640
     tgtatatctt gggacgtccg aagaccattc aaactgatca tcaaccgttg gtcaaaatat      2700
     tccacaaacc gttatcggaa gcacctttgc gtattcagcg aatgatccta gccctacagc      2760
     gatataatat aaccttgcaa tttactcccg gtaaagaagt aatcatagct gatatgttgt      2820
     cccgagcagc agtagagagc aatgacgaaa ccagtcgaga aatttacgac atctatggaa      2880
     tcgagtcaag taatgccgtg gatttcggac gacaaagtag agcagatccg caaagcatca      2940
     caggaggatc cagagatgca ggccatcatg cagtatatca tcaacggctg gccggcgaga      3000
     tgcgacgcga ttccagcaaa tctgaaagtt ttttggaaat acaaatcgga gctcagcacc      3060
     cacaatggat tggtattgcg atgtgatcga atactagtac cacatagtct acgaagagat      3120
     atactggaac gtctccatca gtcccactct ggcatcgaag caactattca actggcgaag      3180
     gacacggtat tttggccagg cctgcgggat caaatcaggc agcgcgttca gagctgtgac      3240
     gtttgtgcta agtactcagc cagccaaagt tcgcagtcca tgcaaagtca cctaattcca      3300
     tcgtacgcat accaaaaggt ttccatggat ttgtgcgaat gtgatttcga aagtcaaaag      3360
     agaatttacc ttatcaccgt ggaccatttc tccgactact tcgatgttga tgaactgaga      3420
     actccgaata cagcagcagt aattcaggcg tgcaaaaaga attttgctag attcggagta      3480
     ccgcaagaag tatcaagtga tggtggtcca cagttcatga gccaggagtt tattcgattt      3540
     gctaccttgt gggacttcaa acacagtgtc tcggcccctt ttcaccaaca ggcgaacgga      3600
     aaggccgagt cagctgtaaa aatcgccaag atgctcatga agaaggccca tgaatcgaaa      3660
     caagatttct ggaaattgct gttacaatgg cggaatactc ccaacaaagt tggctgctct      3720
     ccagttcaac gtcttcttag cagaagaact cggtttgatg tgccaatgtc cgaagcaaag      3780
     tactccccga agcttcaaga aggaataaag gaaaagatcg tcaagtgtag gcagcaagct      3840
     aagttgtact atgatcgaaa aacacgacgt ctcccggatt tggaatttgg ccaaccagtt      3900
     tttgttaagc tgaagccttc ggacaaagag tggcaacgag gaacagttgt tgatccaata      3960
     accgatcgtt caacaataat ttcggttggt gaacgggaat acagacgaga caacacttgc      4020
     atcaaaccag cactgccctc atatgtatct tcaaaaccta aagagccgtc ctcgggtccg      4080
     ttggagcatc caaagacgtt agaacagtca acacctgtag ccgaacaacc catggcagac      4140
     atcggtagac caaagcgtat tattcgttta cccaagcgtt tcgaagattt tgaggtttcg      4200
     taagttatgg gctatttaag ttttctttct ataaaagagg gga                        4243
//
ID   Gypsy-69_AA-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   supercont1.165;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_AA_;
KW   Gypsy-69_AA-I; Gypsy-69_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-157
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.165; Positions 1823005 1823161.
XX
SQ   Sequence 157 BP; 56 A; 38 C; 17 G; 46 T; 0 other;
     tgttatactg tcttgaattc gaacactcct agattttata atatgtacca gccctattga        60
     taaaatagct cccataccta ttacacgtac aacaacataa acggaaataa agcaatcatt       120
     gttcaaccac gaacccactc atgtcatttt gctaaca                                157
//
ID   Gypsy-69_CQ-I repbase;    DNA;    INV; 6751 BP.
XX
AC   AAWU01038780;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_CQ_;
KW   Gypsy-69_CQ-LTR; Gypsy-69_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6751
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 517-517 (2011).
XX
DR   Genome; AAWU01038780; Positions    1045    7795.
XX
CC   Positions [2691-3230] - Reverse transcriptase
CC   Positions [4464-4940] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           667..1800
FT                 /product="Gypsy-69_CQ-I_1p"
FT                 /translation="MLTRKMAEEIQAALDKLREDLERQRLEIVELQGRNEN
FT                 ELFGDTSDDPEAAVEMPIPENNFKASKIPDAIKMIVPYHGDPKTLATWIRS
FT                 VEEKVKFASEDCPSERDRKRAWPLWISVIRDKILDEANNVLVANHIPTDWE
FT                 AIKTALIDQLGDKRDLSTLVTNISYLEQGAKDIVQFYKECRELLSDITAKI
FT                 SIDRELESCARTLTGNYENMIMNSFIDGLNDPYSTLTRTSQPKSLLEAYQN
FT                 TLGQFNANQRKKQRLRTTTHSHKITSHKYGPVVKYNSFSQSTTPNNQQIPL
FT                 QSYSQPGPSKPFFKPSFPQSKPQLLQIKADPSTQTRQNRWPYPQRQGGVNY
FT                 HEAPEEIQTEEEVEQTPEEVEDLNFCLTDELENET"
FT   CDS           2412..5243
FT                 /product="Gypsy-69_CQ-I_2p"
FT                 /translation="MKSPIFKPNKNKLFEQLRLDHLNQEEKKQISKLIQSF
FT                 QDIFFLEGQKLSFTNAIKHKINTSDELPVYTKTYRYPYFHKEEVRKQIDSM
FT                 LNQGIIRPSISPWSSPIWIVPKKIDASGQKKWRLVVDYRKLNEKTVGDRYP
FT                 IPNITDILDKLGRCMYFSTLDLASGFHQIEVNERDIQKTAFNVDSGHYEFV
FT                 RMPFGLKNAPSTFQRVMDNILREHIGKRCLVYMDDIIVFSTSLQEQIQNLK
FT                 SVFESLAKANMKIQLDKSEFLRKEVAFLGHVVTPEGVKPNPEKIATISNWP
FT                 IPKNEKELKGFLGVMGYYRKFIKGFAKIAKPLTSCLRKGESITYTKPFLEA
FT                 FEKCKSILTSSQVLIYPDFEKPFILTTDASNYAIGAVLSQGPVGQDRPIAF
FT                 ASRTLSKTEENYSTIEKELLAMEWGCKYFRPYLFGRQFTLFTDHKPLTYAI
FT                 DLKDKTGRLSRMAVRMKEYEAHVKYRPGNQNVVADGLSRIPSNSRELEVNV
FT                 NDQSDSTSDDATVHSADSDDGDYIPMTELPLNYFKSQIILKIGEQDEEIYE
FT                 EIFPGIHRRTVTRINFGVPFCIRLFREKMHPTRINGILCPESIINTLQVTF
FT                 KNYFSRAKTFKIKLTQSLLQDLKTIEEQELVIKTTHERAHRGIDENHTSII
FT                 RKFYFPQMKKKITSHINLCETCLENKYERNPYKIKFADTPIPKKPLDIVHI
FT                 DIFESRPNLFLSAVDKLSRFAIIIPIKSRSIPDLKKAILKLITSYGTPCML
FT                 VSDNEPALRSTEIRGLLHRLNCETYYTPSDTSQVNGIVEIFHRTLSEIFLC
FT                 MKQKFEDLSDKEIYKLATSLYNTTIHSVTKLKPIEVFFGIKEGEERPLNLE
FT                 TILENRNAIFDELILKLVQQQKKTNDYRNKSREHEPHLDTNESVYNKLQGI
FT                 RNKKRQKYKKQKVRENRRKTFIDCRNIKLHKSKLKRKRKL"
FT   CDS           5265..6752
FT                 /product="Gypsy-69_CQ-I_3p"
FT                 /translation="MYYPISIFINLTLIMVFVTTSHLTIRNLNEDPILLTE
FT                 LRNCKLQSGTLKIIHPINLSAIQESVDYLATTFYSSSASKNPLGQIAKQKF
FT                 KILYNNLMQIKPVVKHRQKRWDSLGTAWKWLAGSPDAQDLRIINSTMNELI
FT                 TENNNQVDVNNRFNKKIAEITSSISQIINTLATNEVQNEISILVTITNIDM
FT                 MNKVLEDIQDAIILSKNSIIANRLLNAQELTFIRSLLIEEGVNSDLPDEAL
FT                 QHVTPKFAVNKELLLYILHVPRLFSKTVPIIQVYPLAHKNQIIFGYPEFFI
FT                 KDGSTLYTTNHPDEFVQKLTYLEKIQDTCIYPLIFGTQSRCNATFFNDTTQ
FT                 MLISEKALLIQNSWNGMLQTNCGPDNRTLSGNFVIEFINCSITFNNQTYQN
FT                 EEITRESNIIYGAFHNFNANWTYKQRLDISSINNETLGNRKKLDHVFLEQY
FT                 HLKLQIWTVIGGLSVTYIIILFIVFAVAKILLDHRGSGRSELHEGAVTKQP
FT                 "
XX
SQ   Sequence 6751 BP; 2451 A; 1393 C; 1189 G; 1718 T; 0 other;
     gattgttaag tggcgcagtc gtggtctgcc cgtggagtgc gcgagtgatt agtgaaattt        60
     aacagcggga ccagcaccgg aagaatacta gtgattggag aacgcaaccg tgagaatatc       120
     ggacttagat ttcgtgattg cacgccacca atcggagcag agaacctaca gctcacccgg       180
     aaagagtgat tagtgaaatt cagcggcggg accagcaccg gcagaatact ggcgaacgga       240
     gaacgcaacc gaggggatat cggacttgga tttcgcgatt acacaccacc gatcggagcg       300
     aagaacctac aactcacccg gaaggaaccc atctttgaag gaacatcaag gattagcggt       360
     gagtgagaaa atataatagt ataataaatt ctttcggaaa tagaagtgaa gccgctttag       420
     gagaaagaaa ctgtgtcaaa tttagctgca agattttctt ttttttgctt ttttcaaaaa       480
     ttatcatctt ggtcgtgttt aaagaaaaat ttaatcaaaa tcagtgttta acgaaaacag       540
     aagaaaagtg agtgaaaaat taatcaaaac gaaatagtgt aacgaaatca gaagaggagc       600
     aaaattgtat ttataaaatt aatttttaaa tcgctttttc aaaattattt tctcagtcgt       660
     gattttatgc taacacgtaa aatggcggaa gagattcaag ctgctttaga caaacttcgt       720
     gaagatttag agcggcaacg attggaaatt gtcgagttac aaggtcgtaa tgaaaacgaa       780
     ttattcgggg atacttctga tgaccccgaa gctgcagtag aaatgccaat acctgaaaat       840
     aatttcaaag cttcaaaaat tccagatgct attaaaatga tcgtacccta tcatggggac       900
     ccaaaaacac ttgctacttg gatccggtct gtagaagaaa aagtaaaatt tgcttctgaa       960
     gactgcccat ccgagagaga ccgaaaaagg gcatggccac tatggatcag tgttattcgt      1020
     gacaaaattt tggatgaagc aaacaatgtt ttagtggcga accacatccc taccgattgg      1080
     gaagccataa aaaccgcgct cattgatcaa ttaggagaca agagagactt gagcactctc      1140
     gtcacaaaca tttcatacct ggagcaagga gcaaaagaca ttgtccaatt ttacaaagaa      1200
     tgcagagaat tactctctga cattaccgcc aaaatatcta tagatcgaga attggaaagt      1260
     tgtgccagaa cactaaccgg aaattatgag aacatgatta tgaactcatt tattgatggg      1320
     cttaatgacc catattcaac attaactaga acatcccagc ctaaatcatt gctagaagct      1380
     tatcagaata cacttggtca atttaacgca aatcaaagaa aaaaacaacg cttgagaacg      1440
     acgacccata gccataaaat tacatctcat aaatatggcc cagttgtcaa atataattca      1500
     ttttcccaat ctacaacacc aaacaatcaa caaataccat tacaatcgta ttctcaacca      1560
     gggccatcca aacctttttt caaaccatcg tttcctcaat cgaaacccca gcttcttcaa      1620
     ataaaagccg acccatcgac ccaaactaga caaaatcggt ggccttatcc acaaagacaa      1680
     ggtggcgtaa attatcatga agctcctgaa gaaattcaaa cagaagaaga agtagaacaa      1740
     acacctgagg aagtcgaaga tctaaatttt tgtttaacgg acgaattgga gaacgaaacc      1800
     taactaataa tttcctcccc tactatgaaa taaaatcaaa caattttgga aaaattcggc      1860
     tattaataga cactggtgcg aataaaaatt acattaatcc agatattgta ccgaagcatg      1920
     caattgctct aggaacaaac cataaaataa aaaatattag tggaagttac aatgtaagca      1980
     attatacacg ctttaaccct ttcgaaaaat tctttaaaaa cttatcacca caaaaattct      2040
     ttttatttaa atttcataat ttctttgatg gacttatagg atttgaaacc cttcgatcaa      2100
     tcaatgctat aattgataca ggttcgaatt cactaaaaat cggagacacc atcattcccc      2160
     tcaataaaaa gctacccgat agcattatct taaacgcaaa cgagaccaac atagtttcgg      2220
     ttccaacagt tcaagaaaat ggtgattttt tagtagaaaa tgacctacct atagcaccta      2280
     acattttcat actgtctggg gtgtattcat atcaagatag aaaaactaat atcctcgttc      2340
     ataatggtaa taccaatgaa cagaacctga acattggtgg gctcctagat ttcggaataa      2400
     acaattttga aatgaaaagt ccaatattca aaccaaacaa aaataaactt tttgagcaat      2460
     taagactaga tcacctaaac caggaagaga aaaaacaaat ttcgaaattg atccagtcct      2520
     tccaagacat tttctttctt gaaggacaaa aacttagttt taccaatgca atcaagcata      2580
     agattaacac atcagatgaa cttccggtat atacgaaaac gtaccgatac ccttatttcc      2640
     acaaagaaga agtacgtaaa caaatcgact ccatgttaaa tcaaggaatt attcgtccct      2700
     caattagccc atggtcgtca cccatttgga ttgtcccaaa aaagattgac gcttcaggcc      2760
     aaaagaaatg gcgactagtt gtggattata gaaagctcaa cgaaaaaacc gtaggtgacc      2820
     gctatccaat tcctaacatt acggatatac ttgacaagct agggcgatgt atgtattttt      2880
     caaccctaga tttggcctct ggatttcacc aaatcgaggt gaacgaaaga gacatacaaa      2940
     aaactgcgtt caacgtagat agcggacatt acgagttcgt cagaatgcca tttggcttaa      3000
     aaaatgcgcc ttccacgttc caacgtgtta tggataacat tctacgtgaa catattggga      3060
     aaagatgtct cgtctatatg gacgacatca tagttttctc aacgagcctt caagaacaaa      3120
     ttcagaacct taaaagcgtt tttgagtcgc ttgcgaaagc caatatgaaa attcagctcg      3180
     ataagagcga atttcttcgt aaagaggtgg catttctggg acatgtggta acgcctgagg      3240
     gtgtaaaacc aaatcccgaa aaaattgcaa ctatttctaa ttggcctata cccaaaaacg      3300
     aaaaagaatt aaaaggattt ttgggagtga tgggttacta cagaaagttc atcaaaggtt      3360
     ttgctaaaat agcaaaacct ctgacaagct gtctcagaaa aggagaatct attacttaca      3420
     ccaagccttt tcttgaagca tttgaaaagt gtaaatcaat actgaccagc agccaggtac      3480
     tgatttaccc agatttcgaa aaaccgttta ttcttacgac agacgcgtcg aattacgcta      3540
     taggagcagt tttatctcaa ggtccggttg gtcaagatag accgatcgca tttgcttccc      3600
     gcacactctc taaaactgaa gaaaactatt ctactattga aaaagaacta cttgctatgg      3660
     aatggggttg caaatacttc agaccatatt tattcggcag acaattcaca cttttcacgg      3720
     accataaacc actaacgtat gccatcgacc tcaaggataa aactggcagg ctcagccgca      3780
     tggcagttcg catgaaagaa tatgaagcac atgtaaaata tcgccctggt aaccaaaatg      3840
     tcgttgccga cggactttcc agaattccaa gtaacagtag agaactggaa gtaaatgtta      3900
     acgatcagag cgattcaaca tcagatgacg cgacggtaca ttctgcggat tcagacgatg      3960
     gagactacat ccccatgact gaattgcctc taaattattt caaatctcag atcattctta      4020
     aaatagggga gcaagacgaa gagatttatg aagaaatatt ccccggtata catcgaagaa      4080
     ctgttacgag aattaatttt ggagttccct tctgcataag attgtttcga gaaaaaatgc      4140
     accccacaag aataaatggt atactatgcc ctgagagtat cataaatact ctgcaggtta      4200
     catttaaaaa ttacttttca agggctaaaa cattcaaaat aaagctaaca caatctcttt      4260
     tacaggactt aaaaacaata gaggaacaag agttggtaat caagacaacc catgaaaggg      4320
     ctcatcgagg cattgatgag aaccatacca gcatcatccg aaaattctat tttcctcaaa      4380
     tgaagaaaaa gattacgtct cacataaacc tttgtgaaac atgtcttgaa aacaaatatg      4440
     agcgaaaccc atacaagatc aaattcgcag atactcccat cccaaaaaaa cctctcgata      4500
     tagttcatat cgatattttt gaatctagac caaacctttt cctatccgcc gtagataaac      4560
     tatccagatt tgctatcatc atcccaataa aatcccggtc aataccagat cttaaaaaag      4620
     ccattttgaa gcttatcaca tcgtacggaa ctccatgcat gttagttagc gataacgaac      4680
     ctgcattgag atctacggag atccgaggcc ttctgcatcg gttaaattgt gaaacttact      4740
     acacacccag tgacactagc caagtcaatg ggattgtcga aattttccat agaacacttt      4800
     cggaaatatt cctctgcatg aagcagaaat ttgaagatct ctcagataaa gagatctaca      4860
     aattagcaac atcattatac aacacaacga ttcattccgt aaccaaactt aaaccgatag      4920
     aggttttttt cggaattaaa gaaggggaag agagaccctt gaatttagaa acaatattag      4980
     aaaatagaaa cgcaattttt gacgagttga ttttgaaact agtacaacaa caaaagaaaa      5040
     ctaacgatta tcgcaataaa agtagagagc atgaaccaca tttagacaca aatgaatcag      5100
     tgtacaacaa acttcaaggg attagaaaca aaaaacgcca aaaatacaaa aaacagaaag      5160
     ttagagagaa caggagaaaa actttcatag attgcagaaa cataaaactt cataaatcca      5220
     aattaaaaag gaaacgaaaa ctctaataat actctttttt gcagatgtac tacccgatct      5280
     cgattttcat caacttaact ctcatcatgg tttttgtcac tacttctcat ttgacgatac      5340
     gaaatttgaa tgaggatcca attctcttaa cggaactcag aaattgtaaa ttacaaagtg      5400
     gcactttgaa aattatacac cccatcaatc tctcagctat ccaagaatca gtggattatt      5460
     tggctacaac attttatagc agttcagcta gcaagaaccc tttagggcaa atagctaaac      5520
     aaaaatttaa aatattatat aacaacctaa tgcaaatcaa acctgtagta aagcacaggc      5580
     aaaagagatg ggacagctta ggtacggcat ggaaatggct cgctggctca ccggacgccc      5640
     aggatcttcg cattatcaac agcaccatga acgagctgat tactgaaaac aataaccaag      5700
     tcgacgttaa caaccgattc aacaaaaaga ttgctgaaat cacatccagc atctcccaaa      5760
     tcatcaatac actggcaaca aacgaagtac agaacgagat ttccatcctc gtcaccatca      5820
     ccaatatcga catgatgaac aaggtattgg aggacattca ggacgccata attctatcaa      5880
     agaattccat aatcgcgaac agactgttaa acgcccaaga gttaacattt atccgatcct      5940
     tactgataga agagggagtc aactcggatc ttccagatga agccctccag catgtgaccc      6000
     cgaaattcgc tgtcaacaag gaattgttgc tatacatcct tcacgttccc cgactattca      6060
     gcaaaactgt tccaataatt caagtctacc cgttggccca caaaaaccaa atcatctttg      6120
     gatacccgga atttttcatc aaagacggtt ccacactata cacaacaaac catccagacg      6180
     agtttgttca gaaactaacg tatcttgaga aaatacaaga cacttgcatt tatccgctga      6240
     tatttggaac acagtccaga tgtaatgcga catttttcaa tgatacaacc caaatgctta      6300
     tctccgaaaa agcacttctg atacaaaatt cctggaacgg catgcttcaa acgaactgcg      6360
     gaccagataa tcgaactctt agtggaaact tcgtcattga attcatcaat tgttcaatca      6420
     catttaacaa tcaaacatac cagaatgaag agatcacccg tgaaagcaac ataatctacg      6480
     gagcattcca caactttaat gctaactgga cttacaagca aagattggac atctcttcga      6540
     tcaacaacga aaccttggga aacaggaaaa agttagacca cgtttttctc gaacagtatc      6600
     acctcaagct acagatttgg acggtaattg gtggattatc agtaacgtac atcatcattt      6660
     tgttcatcgt gttcgcagtt gctaaaattc ttttagacca tcgcggatcg ggacgctccg      6720
     aacttcatga gggagcagtt acgaaacaac c                                     6751
//
ID   Gypsy-69_CQ-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   AAWU01038780;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_CQ_;
KW   Gypsy-69_CQ-I; Gypsy-69_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-330
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 518-518 (2011).
XX
DR   Genome; AAWU01038780; Positions     715    1044.
XX
SQ   Sequence 330 BP; 90 A; 90 C; 74 G; 76 T; 0 other;
     tggacctgcg atatttgagc aactggaaga gctcaatcgt cagcagcagc agctagcaac        60
     agcgttggag actcttcgag aaggctaggt cagcacagtg tcacccgaca cttcctgttg       120
     atcgacgacg gcatgagcaa cggcatcgga caccaccagc aactcagcac ccagccagca       180
     ttcctgcctg cgtagggact ttagggacta gcgcaggcct ctgtataatt tcattttgct       240
     tctaataaat cactcagttt cattacctcg acgtgagcgg accttcagtc cgggattcaa       300
     aattttttaa aaaaacattc cgaactacca                                        330
//
ID   Gypsy-69_DEl-I repbase;    DNA;    INV; 6482 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_DEl-I;
KW   Gypsy-69_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6482
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7032-7032 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6482 BP; 1971 A; 1265 C; 1720 G; 1526 T; 0 other;
     gatggcgccc aaatgaaaag gcagcactgt agactccact gggagaaaat taggaaaaac        60
     gtcagctcta agagaccctc tttaaaacaa agcggttgct cgagagactg ctcgttatta       120
     aacagggctc taggaccgaa gtattaggtt tatatcattt ttgagtattt atctcattca       180
     tgcaacgacg acatcagctc ggcataagcc aggagtagat ttgcgatcga tgtgatatta       240
     gaagtaagtg ctcaatggtg atatacatct gtgataaagc tttaagtatt agaaactagt       300
     taattgacaa tgacggagat gtggcagaag ccggcgacta ggtcatgacc attccgaaaa       360
     ggtgacctat tgcgatcggt gaaagcgtgg atggccaact cgacactgcg aaataaatga       420
     gtaacagttt gcgtaatagc ttggcggaca gacgttggac ggagttagat aaataataga       480
     atatagtata tataacataa tataatataa ataatacgat aatacattgc agcttgttat       540
     taggaaaaag gtagggaatt aattaaataa aattaagatt acacaatatt aaattgtata       600
     tatatgtcta gtttagggat ggtttaaatt ctttaactat gaaaattaga agctaattct       660
     tgttgtttcc cttccaagag ctacccatcc agcaaccggc gtccaaaata ggatccgaaa       720
     tcacatcctt cttgtagcga ttcggtggtg gtccgatgtc ctttgctcca atgcttagag       780
     agaaagtagc ttcgggcggt ggaaagggta acctaaagga agggaaaatt aataagaatt       840
     gataaagtct ggggactaat tttttttctt tgactagtaa ttatcaatta agttgataat       900
     ttagctagtc gacgaaaaaa attcgtgata tctacgtatt catacataca tttggcaata       960
     agggttggtt gttgcttacc aaaataatgc acccagtaac cctaaatcta atggaatccc      1020
     tttctcccat ttggttgaat aaattgatag gaaatccgtc aataaataaa atatagttca      1080
     tttattcagg taggagctgt taatagttgt agatatatat acaaaattca atgggaagta      1140
     ctcacctgtc cagaatgagt gacaacgaga atatagagca agatcaaggg caaggaaggc      1200
     caggggatag gaaccgtctt agcgcgcaac aaaagggagt tattcctagg ggattaaatc      1260
     tcgataacac ttctactcct tttggaacct actcgcatat tcagttagac ccaatacaag      1320
     agcagtatag cgcggaagct gcggcggcat acgactcagg ctctggcgac agaagggaaa      1380
     tcgagctgtt aattatgacg tcccaggagc aattaagagt cgacatgcaa cagttggtag      1440
     atgtgcgaat cgaacaatgt atgcagaccg gattcgctga actgatgaaa aagctggagt      1500
     taaaaagaaa ttcgccaaca tcatcagcat cagccggaag tgcgaacagc cgaatcgggc      1560
     cagtcattag tcgacccggt caacaaaata ttcaggatga cagaagtcaa caggaaggcg      1620
     ccggaagtgc ggctgagacc gaagtaccag gaggaggact acaaaggcag gccttagcgg      1680
     caacgtgcaa ccagctaata ggaacttatt cccgagtttt gggcggaatg gagtctctaa      1740
     tgtgtctcaa tcgctgctac atttgccagg caatattagt aaccgatttg cacccaacat      1800
     gcctggtgca aattgcagcc aaggggtggg caattgggca aggtatcagg gagcaacccc      1860
     agcagcgatg tatggccaag gaccaagaag gaacacaccg gtggggatgc cagatcagcg      1920
     aggaccgaac aggtcgagat tccatattcc tctcgacaaa tggggattcc aatttgcagg      1980
     caacacagga accatgagcg ccgaagattt tatctttcgg gtagaacacc ttcaacaaca      2040
     ctacggcatg ccgtggccag agttgttaag agatttccat cgccttctgg tggaagatgc      2100
     ctccgagtgg tactggctaa tgatccgcac aaagccgccg agggactggt ccgagctcaa      2160
     aactgcttta gagcggcgtt attgcgataa tagaagcgac tacgaccgga ttcaggacat      2220
     cgccgatcga aaacaagggc aaggtgaatc gttggacaag tatttcacgg caattcggcg      2280
     gctggtggct tcggtggggt ttagtgtgga caatgactgg gtcattaaga ctgcaaagcg      2340
     aaacctggca gaaccggtca agcagtgggt gtatcccgtc agagtgtata ctctagagca      2400
     tcttcaagaa gaatgcagag aagcggaacg agcattcgct ccagattacg gaaggctccg      2460
     ttcacaagtc ccagtagtat acagaagtcg gcatgaggga cgtgtaggca aagtggacga      2520
     gattcggaat ttagatattg gagacaggga ggctgtagga ggttcagagg aagccgtaga      2580
     agcgatcggt gtcgagtcca tgaggaagcc aatggtgtgc tggaactgtc agcagaaggg      2640
     tcatggtttt aaggagtgcg aagcggaaca acggaatctg ttctgctaca aatgtggatt      2700
     ggcaaacaca gttactccaa aatgccccaa atgtagccag ggaaacggtc tccggaacgc      2760
     gggagtagcg ggcaatctac gttccgggag agagcctgcg gaaatttcga ggaggcagca      2820
     ctaaaacaag aagacagcga gcaagctgcg gtcagggaaa aaacatccaa tcctgacagg      2880
     gtattgttgt cactgcagga acgcctgcgc cggtatatta aggctcgaga tcgcattttt      2940
     aataacaatc agctgatggg aatgacatta ataacaagac gagttaagaa agctagggaa      3000
     aggttcaaga aacgtcggca agaacggcaa caggtgcaac gatcagttac ggccataggc      3060
     agaaaagaag ccagaacaga tccgcgccca tatgtattgg tgcagatggc cggaaaggaa      3120
     tttcgtgggc tactagattc tggcgcatcc gtaagcttgt tgggcaaagg ctgcaaggag      3180
     ttagtggaca aaatgggaat tccttggcaa ccctatcatg caaaggtacg aactgcaagt      3240
     ggatcagccc agaacatact aggaaaaata cgaattccag ttagctataa tggtaccaat      3300
     gtcaacatga gtatttttct atgtccttct ctggaacagg agctgtatct gggagtcgat      3360
     ttttggcgtg gatttgggat agcaccagaa atattcgggc tcgaagaact tacgacggaa      3420
     agcaatctaa tgcaagaggt accgggcagg atagaccccg aaccacacga tcttaatgac      3480
     aaccaaaatt cgcagttgaa agaagttcaa gaatcatttc tgtcttttga agagcacgga      3540
     ttgggaagaa catccgttat gaagcacact attgaactgg taaaggaggc agttccggta      3600
     aaagatcgcc attatccggt atcgccggca gtgcaaaagc ttatatatga ggaagtagat      3660
     gaaatgttgc gcctaggggt cattgaagag agcgatagcg cctggagcaa ttcgattacc      3720
     ctagttagaa agcctggtaa gaatcgactc tgcttagatg cccggaagct gaatgagaga      3780
     accattaagg atgcatatcc gcagcaaaat atagagggca tactgagtcg cattgacacg      3840
     accaggttta taacgagcgt cgacctaaag catgcatttt ggcagataga gttggaagag      3900
     agccatagaa agtacacagc gtttacagtg ccgggacggc cgttgtacca attcgtagtt      3960
     atgccgtttg gattaaccaa cgctgcccaa cgtttatgtc gcttgatgga caaagtgata      4020
     cctcaaacgc tcagggagaa ggtgttttta taccttgatg atttgctggt ggtatctcct      4080
     acattcgacg agcatataga aacgttgaaa agagtttctc aatgtctccg agaagcaggg      4140
     ttgacgattg ggcttaaaaa gtcacatttt tgttttaagg agctgcgata tcttgggttt      4200
     atcataggta aaggagtcct gaggacggat cctggtaaag tggatgcgat ccgaaacatg      4260
     ccggaaccaa gaagtgcaaa ggaagttcga cgctttttgg ggacagccgg atggtatcgc      4320
     agattcatca ggaactttgc tgaattggcc gcaccgctca cggatacttt aaaaaagggg      4380
     cggaaattcg aaatgacgaa ggacgctaag gaagcaatgg aagccttaaa aaccgcgctt      4440
     atatcagctc cagtattgcg gcatccggac ttctctaaaa ggttttatgt gcaatgtgat      4500
     gcatcggatg ttggaatcgg agcagtgtta ttgcaggaag aagaggatgg cggtgaaaga      4560
     ccaatcgctt tctattctca gaagctcaat ccttgccaaa tgaagtatag cgtgaccgaa      4620
     aaggagtgcc tggcggccgt cttggccgta aaacggttca ggccatatat agagttgatg      4680
     ccgtttacga taataacaga ccactctagc ctaaaatggc tgatgtcgtt gaaggatttg      4740
     agtgggcggc tggcaagatg gtccttaaaa ttgcaggcgt ttgatttcgt tatcgaacat      4800
     cgcaaaggtt cagaaaatgt ggtagcggat atgttgtctc gatcagtgga agaagtgaag      4860
     ttggaggcaa aggaggatgt tttgggtttt gaaacgatag agtttaaagc ggcggactac      4920
     accgagttga gaaaggaggt cgaggcaaat caggagagat tgccggattt aaaagtagtg      4980
     gacggctttg tattaaaacg cacccgagtt gaagatggaa gggcggaatt ggaagaaaat      5040
     agctggaaac tatggattcc ggcggccctg acgtcaacgc taatcgagca ggcccattct      5100
     ccacccacac ggtcacatgg gggggtcgcg aaaaccctat tccaattaag acgccaattt      5160
     tactggccgg gaatggtggc cgaggtcaga aaattcattc gggactgcca ggtgtgtaaa      5220
     gagacgaaat ccacaaacag accgcctaag ccgggactag gagcagagac agtgacgtac      5280
     cgcccgtttc aaaagttgta tgtggacttc ttagggaaat atcctcgctc gaaaggtggc      5340
     aatgcataca tttttatagt ggtagaccat ttttcgaaat tcgtcttttt aaaagccatg      5400
     agggaggcca cggcagcagc agtcgtaagg tttttgacca gcgaagtgtt ccacacgttt      5460
     ggcgtaccgg aaatactgca ttccgataat ggaaaacaat tcgtgggaaa gaagtttgcg      5520
     gatatgatac agctgtacca aataaaactt gtaaggacgg cggttaattc ccctcagtcc      5580
     aatgcgtccg aaagagtgaa ccaatcggtg ctgaatgcga ttagggccta cttggatcag      5640
     gatcaccgcg actgggactt atatctgccc gagatagaga cggcattaag aagctcgata      5700
     caccaggcca ccggctctac accgtatttt gcactgtttg gccagcatat gttcacgagt      5760
     ggggctgatt accagttggc aagaaaacta tactcgttgg aggactgcca aatccggcat      5820
     ctagaacatg gagataggat ggaactgttg cgcgagtcga tccgcaggaa tatacatgga      5880
     gcgcacgaga ccagcgcgcg gtactataat cggaccacac ggcagatcac attcaagcca      5940
     gggcaagaaa tcttccgaag gaattttgta caaagtgact ttggaaagaa ctttaatgcg      6000
     aaattcgcca gaaagtttgt caagtgcagg gttcgcaggc ccgtaggtaa ccatatgtat      6060
     gaagtggaaa acacgcgcgg aaagctctgc ggggtatacc atgtgaagga cttaaagcag      6120
     caaggaatgt ctgaagaagg cgacctacac caaggggata tgaacgacca acgaagagta      6180
     tctggaagag agaagaaata taaatctgga atatgtttca gatatttcac gtataacctg      6240
     aggcaaatag gacagctgat attccggagt aaaaaagcac cgaagtccag actgggtcgt      6300
     tgggcatatt ccttttgatt ccgtgggcgt tttccctcgt tgggcgcttg gagagttcct      6360
     atgtttcctg cgggttacaa atccgtggtt ctgactccag attacggatt aaggccattt      6420
     cttcactgcc aattctcttg ttttgttttc gtattcggat tgttgttcat tgtcagtgtg      6480
     gt                                                                     6482
//
ID   Gypsy-69_DEl-LTR repbase;    DNA;    INV; 1649 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_DEl-I;
KW   Gypsy-69_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1649
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7062-7062 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1649 BP; 498 A; 262 C; 399 G; 490 T; 0 other;
     tgttgtggcc gggctatcga tagccatatc gaatgtcggc gcagggggga ttttatactg        60
     aaaatactga gttgttttta tggtcacccc aaatgttaaa cggccgttga cccggcaaat       120
     ttgaaacacg agagccggag ttcgggaagg tgataggaga agaggagagc ccagaacgaa       180
     agtcacggtc aaggcgttaa ggctgctgcg ctcccctcgc caagtaaagt tttttttgtg       240
     gtgcacgtgc ggattacata atcccagtac cttggtgcga caaatttttt tttgagctgc       300
     agcagcgcgc cagtgtccac aggcaacaac aacgtgaagt aaaggaaagc aggactggga       360
     agcctgaagc ggcgaaaaaa cttggtaagt gatcggtgtt cgagagtgag gccatgctta       420
     tgggcttttc attccagagc cgatcagacc cagttaccag tttcaaaaaa cagccaggtc       480
     acccaagttg gcctggcgat aatttttgtg aggcccggac aataaagacg gccagagatt       540
     tttttgaaga aaattattac ggcgtggatg accgacacgc ttaccaagag gcggcaacgg       600
     gagccagtcg gcttcagtca gatttttttt tgttgttatt agtttttttt gaataattaa       660
     ttgttttatc gtgtagtgtt tgttgtaaaa attgtatgat tatttattta atgataaggg       720
     ttatttacat ttttttttgg ttattaattt ttatttacac ataggccata atatctacat       780
     cttattcaag cgtttttatt atttacactt tgaatacata cggtctgcat gcattatact       840
     tacatctaca cgtaaacgta taataacgtc ttatacccat attacttata tttaaatatt       900
     gtcgaattgt ttggtttatt tgtatatatt tatattttta tttatataaa ttcatgagtg       960
     gcccgagtga gcgtggggat ttgagcccgg aataatatta attcatgttc tctgcgtata      1020
     caattacatt cttttttttt taatccctgg taaagaaaga ataaacaacc ttaagagctc      1080
     ttacggtagg tcagggtcaa gaagtatata aattttggga aacccgagaa cgtacactgg      1140
     ggtccacaag agggtaatat gttgtaaaaa ctagtgaata agaattatta aaggaaaata      1200
     agaaagatga acatggagta aagattaatt aatgggagag ggggggggat attagtaaaa      1260
     gggggtacat aatggtgcaa taaaaaaaca agaaataaag gtaaacaaaa tgtatttggg      1320
     gcagctgcaa gtatgttgct caaggcagtc tgcatggtcg ggagggatga gcaggtgacc      1380
     tccagttcag caggaggagc ccaaagaatt gccaaatgtg tgtaggttta aaactaacta      1440
     atatttgtgt attttttttt tgtttattcg ttaattgaaa tttaaattta aaaatgacgg      1500
     tgcagtatag agtgttgcga aacgtaggac atgaaaatcc aacgttttct gttgttgtgt      1560
     gagagggcag ggttagggga accacggccc tggaaaatcg agctagctgg ggcagcccga      1620
     ctcacgcagg accacgcagg ttcataaca                                        1649
//
ID   Gypsy-69_LMi-I repbase;    DNA;    INV; 5058 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-69_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5058
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (05-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(718..1425,1410..2396)
FT                 /product="Gypsy-69_LMi-I_1p"
FT                 /translation="MDSNDENRYHLRSRGRDHADEGNNDQGNQLVNSQNNN
FT                 IGSDTLDQSEMTENNAEANTNENVNSVVNDCIENGDLDWHGQNENLNVRQD
FT                 AAFAETGVHNLNXSVEELRRVSHGTGSAETLPIQDNFQNISPMQDQSPMWL
FT                 AMMRSLMTDLGRKIEAGQEKESLKNELSAEIKAEKISQTKSEALEKKIDGV
FT                 QKELKKAFEEGQTKLEASINQLYKKYNDLDQRVNNLEASTNEVFMNRGLYE
FT                 LNNKTVDLGKKLEACKIEITQNIDAKVKVVDNKVENQGKEICQIKQQVDNL
FT                 DDMHTKMAKACKDRYQQQMTTLHTVVSEQNEINNKMAAIESQCKDNANVMH
FT                 SRIIPEIETVAFDVAKLKENIEEVSKTSCQIITVGDTINAGKYHTFSSKGN
FT                 LHPVAFIRQFENTMPPQYTEQQKIHMVASRFEGEVISWGASVINKCKTYGE
FT                 FVKAFLNQYWSSSTQNSVRNEIFEAKSFESSGCSSYKEFFQHYWEKNQYLS
FT                 NPLRETDLTDIIMLKLPTSVQEKLVNIDYADVNNLLRALERLDALAGNRQV
FT                 QEWWRRNRWRADRRNTRP"
XX
SQ   Sequence 5058 BP; 1769 A; 811 C; 1098 G; 1378 T; 2 other;
     catggcatcc ctggtgggga atttctttga agactaagtt ctttgcagaa agttacttga        60
     gaaaagtgat gtttaaattt gttgataaaa ttttgtgaac tgtggttacg aagtttatgt       120
     gcataaactg gcctagaacg gtgctcgaac tgtggtatgt aatttacaaa cagtgtggct       180
     gaattttgaa cagtgaatta taggctgtat aaactgtgtt cgaatttttg atggggatgt       240
     actgtgctat gaggtagtac atttaatggt gttgtgaata gtggcaagtg cggctaggct       300
     gcaataatat cgttattgga tgctggtggc aatctcgtgt gcacgtcact ggattaagtt       360
     attgcatcgg caagaagatt ttaccgcatc acgggaggac gccgtgcggc cggtagcaga       420
     aagtgacgag cggcagcata cgacgccagg tgcggacggg agcagcgagc catcgccaca       480
     cagcagccaa acagggcgca ccagcagtcc gacgcaacgc gggcacacct acctcagcag       540
     ccggtagcag ttcatctcgt cggcagcaca gtagactcca aagagtgagt gtcgcaatag       600
     caaagcttaa gtaacgcatt ttatgtatga aagcaatgtg cgtaaagcag tgtgacagat       660
     tatcataggt ttttggagaa aattttggct gaaactttaa aattattaaa ctgtaaaatg       720
     gatagtaacg atgagaatag gtatcatctt agaagtagag ggagagatca tgcagatgaa       780
     gggaataatg atcagggtaa tcagcttgta aattcgcaaa ataataacat tggatctgat       840
     acattggatc aatcagaaat gacggaaaat aatgctgagg caaatactaa tgaaaatgta       900
     aattctgttg taaatgattg cattgaaaat ggcgatcttg actggcatgg gcaaaatgaa       960
     aatttgaatg taaggcaaga cgctgcattt gctgaaacgg gcgtccataa tttaaataam      1020
     tcagtagaag aattaaggag agtgagtcat ggtacaggat cggctgagac attaccgatc      1080
     caagataatt ttcagaacat aagtcctatg caagatcaga gtccaatgtg gctagccatg      1140
     atgcgatcat taatgacaga tttgggaaga aaaattgaag caggccagga aaaagaatct      1200
     ttaaagaatg aattaagcgc ggaaataaaa gcagaaaaaa taagtcaaac aaaatcagaa      1260
     gctttagaaa agaaaattga tggggtacaa aaggagttga aaaaggcatt tgaagagggg      1320
     caaacaaagt tagaagcaag tataaatcaa ctctacaaaa aatataatga tttagatcaa      1380
     agggttaata atttggaggc tagcactaac gaggtcttta tgaattgaac aacaaaacag      1440
     tagatttggg taagaaatta gaagcttgta aaattgagat aacacagaat attgacgcaa      1500
     aagtcaaagt tgtagataac aaggtagaaa atcagggtaa agaaatctgt caaataaagc      1560
     agcaggttga taacttagat gacatgcata ctaaaatggc gaaagcttgc aaagataggt      1620
     accaacaaca aatgacaaca ttacacactg tagtcagtga acaaaatgaa ataaacaata      1680
     aaatggcagc aattgaatca caatgtaaag acaacgcaaa tgtgatgcac agtaggataa      1740
     ttcctgaaat tgaaacagtc gcatttgacg tagcaaaatt aaaagagaat attgaagaag      1800
     tcagtaaaac tagttgtcaa attattactg taggtgacac aatcaatgca ggtaaatatc      1860
     acactttctc gagtaaagga aacttgcatc cggttgcttt cattcgacag tttgagaata      1920
     ccatgcctcc acaatacact gaacaacaaa aaatacacat ggttgcaagt agatttgaag      1980
     gagaggtaat ctcgtggggg gcaagtgtaa taaacaaatg taaaacttat ggtgaatttg      2040
     taaaagcttt tctaaatcaa tactggtcaa gtagtacaca aaacagtgtg cgtaatgaaa      2100
     tatttgaagc taaaagcttt gaaagcagtg ggtgcagtag ctataaggaa ttcttccaac      2160
     attattggga gaagaaccaa tatttatcaa accctttgag agaaacagat ttgacagaca      2220
     ttatcatgtt gaaactacca acgtctgtac aggaaaaact agttaacata gattatgcag      2280
     acgtaaataa tttgttgcga gctttagagc gattagacgc cttagcaggc aacaggcaag      2340
     tacaggaatg gtggaggaga aacaggtggc gagcagatcg ccgtaatacg aggccgtagg      2400
     ggcggggcca catgcctcag agggtatcac atactttgtg atactaggtg attgacgacc      2460
     accaggcact ccagttattg acaatattat ttccgtttcc tttccatatt gtcaatcttc      2520
     ctcttttatc tatcactaac aactgtcgtc tttccattct tcactatcgc attctatgca      2580
     gagaatatgt aaacacgatt tagacaaaca cagaactaga caagaaacat accttaataa      2640
     gacaataata tccaggatac agcacacttt atttaaaaag tgactgatga aggacactat      2700
     atattggctc ataggagaat agcatcacag aattaaatat cttacatgtc aaaagtttca      2760
     tgctgtgtaa aatcacatga gcgagttgaa attctgtcac acacaaagga aagacgtgga      2820
     tacacacaga aaatactttt agatatttca gctgagtcgc agaagaagag gaaagcaaaa      2880
     ccaggtaagt gaattattat ttaagtaaac agctaggggt gattaaagag acaagtggta      2940
     tttcgtttca cgactaaaca aggattacga ctggaatagt gctctgtgta gaaagaagta      3000
     gtttaggcga cgtgttattc cgccccattt ataatatgta gtgaaaatat taggcgaggt      3060
     gcaattacgc cgtagcgtat tgtattgtga agttttgaaa tggtgttagg catggaaagg      3120
     tccggccaca cccatacaaa gatttatgat gtttgaggat atggtaaggc gactggaagt      3180
     cggccaataa ttataagtaa gaagagaata cgggcgatgt ggtttccgcc cacctgttgt      3240
     tgttgtggaa ttataggaat gcacgggcga tgtggtttcc gcctacccac ttattaggat      3300
     taagcacact gtccagtact tacagggtcc atacgtagct tgtactattg tgaaacagta      3360
     ccatcttgaa ccaattatat tgtcaccctg agataataac acttagactg tagttgagct      3420
     ccttccagaa tgttgcggcg acgagaaaat attttacata ttcatgcacg acttggaaaa      3480
     gatatttatt aaatgtaaac ttgcacatac agtcacaaaa gattcaatat gtaaaatatg      3540
     taaggtaagt acctaactaa gtttggtcat gagaatttca tacacttaaa aaaagtacac      3600
     gtaaaacact gtattttcaa agtatttaac agatttcata attcaaaaga ggaagaagtg      3660
     acctctttct gtagaatgaa agcaatgacg gattcgggtt ctgtcatcca agmagatgac      3720
     gtatatttta cgggatgtgt atttttgtat taaatgattt gatatttctg aatcacattt      3780
     gttttgtcta tttagaggaa atatgtaaaa tggtaaagac actactgatt acgacctttg      3840
     tattaagctc agtatatgga aagtatgttg acctccaatg aatgaggtgc aggatgtaaa      3900
     cagaattcca gacaaggaca gtggccagat ggctacacac acacacacac acgcacacgg      3960
     acaggcgttg cgttgctagt cgggcagggg atgagtcaga tgcggccgtt gccgtagcgt      4020
     cagctggcac ggattgatac agactgccac tagtagcgaa ctttagaaac gagcaaagct      4080
     ttatacaaca taacagaact agaggaatat tatgagcact aagaaacaaa atgaatacca      4140
     tatgtaagca taaaagttgt aatatgatca attcaggttg tatataatat tgttgtaaat      4200
     gatttgtaaa ttttatttca ggtttgtaat taagtaatag gctaagtccc tgatactcgt      4260
     tgtttgtatc ttttcatgta aatgtacgag agaatgagga cgtgggagac aagaggaagc      4320
     aggcagacga gcttatcctc actaatctgg tagcagacat ggacagaggt agcgtcacac      4380
     acgacagatg ctaaatccgt accacgccgt ggtcgctgct ccgcgggacg caagctctac      4440
     cccagctgct gagcttacgc tacaatcctt cgtctccacg tcaagataag tgcaaagtgt      4500
     taagtgtcat taaacaagtg aaaagtgatc agttcaattc aaatgcatta aaaacggcaa      4560
     agcgccgata acttagctat ctcaagataa aaggacggca aagtgctgat aatttctcat      4620
     gttttaaagt tagtgtcatt ttgtaaacta attttccaat tcgagagaac taaataatta      4680
     atttcttgac tcatttctaa agtaaacttg agcttagatt tttcaaactt gcaaaacagg      4740
     cctatctaat caattttcaa tgtcattcat agttacagtc gctatcatta tattacctaa      4800
     aatgttttct gtaattgtca ataggaactg acacctagat tttatcaatt atgtataatt      4860
     atgatattga ctctataatg ctatgtaaaa tcttacctat ggtgctttga tatgttatgt      4920
     actgcagatc aacaaaattt gggtatttgg ttcaaatttt attatattag taaaatattt      4980
     ctaaattata tagtacattt tcaaattgct agttattaca tgaactatac aatgttgaaa      5040
     atttaattag atggggga                                                    5058
//
ID   Gypsy-69_LMi-LTR repbase;    DNA;    INV; 900 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-69_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-900
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (05-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 900 BP; 236 A; 185 C; 211 G; 268 T; 0 other;
     tgtgtgaggg ggctgatatg gagccgttta tttcgcatat caatatatta ggtgttaaag        60
     aagttttctt ggttggagaa cgtgtgacgc tagtagaaag ggtgagagag agagacagta       120
     gatgagcttg tatctgggaa agctccgccc ctattgcgtt agatctgatt ggctcgccta       180
     tactagttgt ccgccaaaac tttaacttct tttattaata ttaactttcc atgttattaa       240
     aattatctta tactttctgt aatgcttttg tgctaagcta tatttcggtt aattcaaaga       300
     tttaattatt tgtatatttt gtaataagtt gaacaatgtt agtctagaag tttcgcttgg       360
     cgccaaaacg gtggcttgtg gcgcgcagcg agggcggcgg cagtcagtcg agcgcgaccg       420
     cgatacttca cattcatgtt agttcagtgc gggccaggga agtttatagt tatgcacgtt       480
     tatatttcta acattactca gtctgtatat ttgtgcttgg atatacactc ccatttcttc       540
     aataaaaaca agcactggca tcctacaaaa gcaaaagtta ttcgtagtgc agtacttcct       600
     agccacccac ctctttagca cacttcagta caacggatgt gcgacctgtg tgctcacctg       660
     cgcaatggac atcaactacg acagaagaca agtaaaagag tgattcagac gtgcactgaa       720
     gttgcatgtc gacacggcac ctcgcgtgca gtgctgcccc gtttacaaac cagggcactg       780
     gcacgaagtg cgttggtaac atcgccgagg gaaggcatga aagaggggag gtgttttagg       840
     aactttgtca actatgcact gaccttccct ccctgtcttt ttttaagaag ccccgccgta       900
//
ID   Gypsy-6_AA-I repbase;    DNA;    INV; 8963 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AA_;
KW   Gypsy-6_AA-LTR; Gypsy-6_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8963
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 981-981 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5454-5933] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1138..3063
FT                 /product="Gypsy-6_AA-I_1p"
FT                 /translation="MDLLKVNMNSKFPYAGHLTNDEIDYELKLRNYTEDVE
FT                 KELNFKQRLLRRLFNEDEQENRDYRTSLTIDQEFEFVAGRVNMIRGCLAKS
FT                 FDIKYLSRLKHYHMRVQRCIADDVEAKKMKELLLGNIATLLSSQNALQSKM
FT                 QANPKDLLGETDSDQHYSEKSEGAKSLLCQLPFLLPAMEQSELTQGKESGH
FT                 TDQDMRNLGAYRKSENKMTQEKIQDKNENSTSRTNNSPQSEIATPEQNRSD
FT                 EVIGLQAKMDQLELQVSRLTSLLMASIPNLQQQPERGYSNSCELPANRYNQ
FT                 TNQDNQRTRRFEGLSNINLEPHNMGSPRNNVRQNGNRIRFENNSSEDETPV
FT                 DYPHPRERAIHREDRVQYDRKMEKWNLFFTGDSRSTSLEDFIFKVKVLASM
FT                 NSIPNAKLLSNIHLLLRGEASNWFFTYYQPSWTWDIFETRIRFRFGNPNQD
FT                 QGNRQRIYDRKQQKGETFIAFVTEIERMNKLLTKPLSNTRKFEIIWENMRQ
FT                 HYRSKLACFSVSNLDQLIQANYRIDASDPTLHPVGPKLSVHNIEGEEVEES
FT                 EDEEVNAIDRRQNRGQNQGLNRNGQNPRRENQEATRVPMCWNCQQQGHFWR
FT                 NCREMKTTFCYVCGNPGKISSTCDKHPRRSSQNQAVESPSSSGN"
FT   CDS           3486..6308
FT                 /product="Gypsy-6_AA-I_2p"
FT                 /translation="MMQGISGLEEVAEIGQVEETLGTELFHFFIHPIETIP
FT                 AIVPSLPDKTLDIPELDLPEASKTTPETLEIEHDLSAEDRKELEDIIRQFP
FT                 CTTENCLGRTTLLQHEIILREDAKPRRQPIYKCSPAIQAEMDREIERYKKL
FT                 DAIEECTSEWANPLVPVRKSNGKLRVCLDSRRINALTKKDSYPMRDMRSIF
FT                 HRLGSAKFFSVIDLKDAYFQIPLKEESRDYTAFRTATGLYRFKVCPFGLTN
FT                 APFSMCRLMDKVIGFDLEPYVFVYLDDIVVATETLSEHLRLLKLVAERLRK
FT                 ANLTISLDKSRFCRKQVSYLGYLLTEKGVAIDSARIEPILNYTRPKSVKDI
FT                 RRLLGLAGFYQKFIKNYSKIAAPISDLLKKNPKKFLWTESAEEAFQNLKSA
FT                 LISAPILTNPDFSCPFIIESDASDNAVGAALVQNINGETKVVAYFSKKLSS
FT                 TQRKYASVEKECLGVLMAIEHFRHFVEGTKFKVVTDARSLLWLFTIGIESG
FT                 NSKLLRWALKLQSYDIELEYRKGKLNVTADCLSRSLEAITPIDPDYEDLIK
FT                 QIIKDPQSYPDFRVIDNRVYKLVKNQGKIEDTRFLWKQYLPISERERVIKD
FT                 IHDKAHLGFDKTLTAVRERFFWPRMSTQIKTFCRNCLTCQTSKATNINTTA
FT                 PIMAQRKTADYPWQFLTMDYVGPLPVSGKGRSTCLLVITDIFSKFILVQPF
FT                 RQATADSLVPFVENMVFQLFGVPEVILTDNGTQFLAKSFQDLLEHYNVTHW
FT                 RTPNYHPQVNDAERVNRVLTTAIRASIKKNHKDWANNVQTIACAIRNSVHE
FT                 ATHYSPYFVMFGRNMVSDGREYRYLRDNVEANDSTNIEREKLYAEIRENLK
FT                 KAFEKHSRYYNLRANANCPTFSLGEKLLKKNTELSDKGKGYCAKLAPKYIP
FT                 AVVKRKVGEHCYELEDEKGKRLGVYNCRYLKKLTSSS"
XX
SQ   Sequence 8963 BP; 2847 A; 1697 C; 2003 G; 2400 T; 16 other;
     ccccgcgcga attgcgtaat cgttcgccca tgcggtctcc acagtcaacc agccaagcca        60
     acgaacaata ggatcagccc aagccatcca acaatagcga ccmtcatmgc cagtcccgtc       120
     gtctgcgaag cagccaagcc acagcagcaa tagaatgcgg taaccgtgag taaaamgmaa       180
     tcatgtgcac atgtgacgtc atttwgggga gatttgattc gtkagktcga ccaagwtaag       240
     ttwgagagca cgcacgctta ggtaggatag gcaccttagg aactmggagg aataggaaat       300
     aaamccggaa atgtwaaatt atccactgtg ttgttcccta acsgatgaag cccwgcccac       360
     cgattacgta atatgtttca gtctgtggtt cacacgagcg gtctcctttt ggcgctttcc       420
     gtmtttcatt gagaktttgt tgaatgatgt gctttcgtat cggtgccgcc atctgtggtg       480
     cggtggtaga atcttccagt gatgatggac ttcatagtgg aaagcttctc ttggcacgtg       540
     tcgctagggt aaagtgagta ttgttcgctg ctggattatc gaagtctagt aaggcggacg       600
     ctaggaaagt ggagtgggca ggattgttct tcaaaccttt taaaggttgt ataatggacc       660
     aacttaggtg ggtctcagac cgggcataaa attaacacga gcgggaggtc ctctaacgag       720
     gtggcgctta agcttctcgc tttgcgaaga ataatcgcgt cagtccatgg tggcgaattg       780
     taagctaggg atatttccgg ccgaccacga actacgaagt tcgtgcggct acatttggcg       840
     cccaactgca agtttcgaac ctaggaatgc ttgaataaat tataggatat ttcaatttat       900
     tacggaaaat aattaatgtg gattcgttaa agtcgtttct tcgggatatt taggaaatct       960
     agttattgtg gaatttttga attgattttc ggattttttc ttcttgctta ggataattta      1020
     tttaggaaat actacatttc ggatattcaa aatattgaaa ttgtttattt attaattgta      1080
     agaacttaga taagcctaca ttcgttgaat ttgtactttg aattattggc ttacataatg      1140
     gatttgttaa aagtaaacat gaattcgaaa ttcccgtatg cgggtcattt aactaacgat      1200
     gaaattgatt atgaactaaa attacgaaat tatacagaag acgtggagaa ggaattgaac      1260
     ttcaagcaga ggctactcag gagattattc aatgaagatg aacaagagaa tcgcgattac      1320
     cgaacatcct tgacaattga ccaagagttt gagtttgttg cgggacgtgt taacatgatc      1380
     aggggttgtt tggctaaatc attcgacatt aaatatctgt cgcgattgaa acactaccac      1440
     atgcgggtgc aacgttgtat agcagatgac gtagaagcga aaaaaatgaa agagctctta      1500
     ttgggaaata tagcgactct tctttcgagc caaaatgcac ttcaatcaaa gatgcaggcg      1560
     aatccaaagg acttattggg ggaaacggat tcagatcaac attattctga gaaatcagag      1620
     ggagctaaaa gtttattgtg ccagcttccg tttttgttac ccgctatgga acaatcggag      1680
     ctaacacaag ggaaagaatc tggacatact gatcaggata tgagaaattt aggagcctat      1740
     aggaaaagcg agaacaaaat gacacaagag aaaattcagg acaaaaatga gaatagtaca      1800
     agccgaacaa ataatagtcc acaaagcgaa attgccacac ctgaacaaaa cagatcagat      1860
     gaagtgattg gtttgcaggc taaaatggac caattagagt tacaagttag tagattgaca      1920
     tcactgctca tggcgtccat ccctaacttg caacaacaac cagaaagagg gtatagtaat      1980
     tcttgcgaac ttccagcaaa tagatacaat caaaccaatc aggacaatca aagaacaaga      2040
     agattcgaag ggctttcaaa cattaatttg gagcctcaca acatgggaag tccacgaaac      2100
     aatgtaagac aaaacggaaa cagaataaga ttcgagaaca acagtagcga ggacgaaacg      2160
     ccagtagatt atccccatcc gagagaacgt gcaatacata gagaagacag ggtacagtat      2220
     gataggaaaa tggagaagtg gaacctgttc tttacgggtg actccagatc gacttcctta      2280
     gaagatttta ttttcaaggt caaggtgcta gcaagtatga atagcatacc aaatgcaaaa      2340
     ctgctaagca atatacactt gttattgcga ggggaggcat cgaattggtt tttcacctac      2400
     tatcaaccct catggacctg ggatatcttt gaaaccagaa taaggttcag attcggtaac      2460
     ccaaaccaag atcaaggcaa tcgccaaagg atctatgatc gaaagcaaca aaagggtgaa      2520
     acctttattg ccttcgtgac cgaaattgag agaatgaaca agttgctcac caaaccgctt      2580
     tcgaatacaa gaaaattcga aataatttgg gaaaacatga gacaacatta ccgctcaaaa      2640
     cttgcttgtt tttcggtatc gaatttagac caactcattc aagcaaatta ccgaattgat      2700
     gctagcgacc cgacgttaca tccagtgggt ccaaagctct cagttcacaa catcgaaggt      2760
     gaggaagtag aagaatcaga agacgaagaa gttaacgcaa tagacagaag acagaataga      2820
     ggtcaaaatc aagggctaaa cagaaatggg caaaatccta ggagggaaaa ccaagaggca      2880
     acaagagtac caatgtgttg gaattgccaa cagcaagggc atttttggcg aaattgtagg      2940
     gagatgaaaa cgacattttg ttatgtttgc ggaaacccag ggaaaatttc ctcgacctgt      3000
     gacaaacacc ctagacgatc ttctcaaaat caggctgttg aatccccttc tagttcggga      3060
     aactagattt gggatgcggt agagggaacg ctggcatccc aaagaaacaa gtcgttccaa      3120
     attcaaatgc cgttccctat gttgaccctc tagaaagcct tttagagata aaaatacaga      3180
     caagtcgttg ccctcacgtc caagttcgaa tatttaatga agaaattgaa gctttactgg      3240
     attcgggcgc aggaataagt gtaaccaact cgaagcgact cattgaacat catgggttga      3300
     aaattttacc gtcgccgata cggatttgta cggcagacaa aaccaagtac tcttgtgttg      3360
     gatacactaa cttgccaata acgtttaaag gtattactcg gacaatttca gtggttattg      3420
     taccagaaat ttcaaggact ctaattctgg gcataaattt ctggaaagcg tttgacatca      3480
     aaccaatgat gcaaggcatt agtggtctag aagaggtggc ggaaattggt caggttgaag      3540
     aaactcttgg aactgagttg tttcacttct tcatccatcc gattgagaca attcccgcaa      3600
     tcgtgccttc tttaccagat aaaacacttg acattccaga actggattta ccagaggctt      3660
     cgaaaactac tcccgaaact ctagaaattg aacatgacct aagcgcagaa gatcggaaag      3720
     agctcgagga tattattcgg caatttcctt gcacaaccga aaattgttta ggacgtacaa      3780
     ctttgctgca gcatgaaata attcttagag aagatgcaaa acccagacgg caaccgatat      3840
     acaaatgttc accagctata caagcggaaa tggatagaga aattgagcgg tataagaagt      3900
     tggatgcaat cgaagaatgc acaagcgaat gggccaatcc tctagttccg gttcggaaat      3960
     cgaacggaaa acttagagta tgcttggact cacgcagaat taatgctcta actaaaaaag      4020
     actcttatcc aatgcgggat atgaggagta ttttccatcg cttaggaagc gcaaaattct      4080
     tttctgtaat agatttaaaa gatgcgtatt tccagattcc tcttaaggag gaatcgcgag      4140
     attatacggc ttttagaaca gctacaggac tctatcgatt caaggtttgc ccgtttggat      4200
     taaccaatgc tccatttagt atgtgcagac tgatggataa ggtgattggt tttgacttgg      4260
     aaccctatgt attcgtctat ttagacgaca tagtggttgc cacagaaaca ctatcagagc      4320
     atctaagact tttgaagctg gtagcggaac gcctacgaaa agcaaatttg actatctcgt      4380
     tagataaatc aaggttttgc cgaaaacaag taagctattt gggttactta ctgactgaga      4440
     aaggagtagc aattgacagt gccagaatcg aaccgatttt aaactatacg agacccaaaa      4500
     gtgtgaaaga tattcgtcgt ctgttagggc tagcaggatt ttatcaaaaa tttatcaaaa      4560
     attacagtaa aatcgctgcc ccaatatcgg acctgttgaa gaaaaacccg aagaaattcc      4620
     tatggacaga atcagctgag gaggcttttc aaaaccttaa atcagctctg atatcagcac      4680
     caatactgac gaatcctgac ttttcttgtc cattcataat tgaatccgat gcttcggaca      4740
     atgcggttgg tgcagcatta gtccaaaaca tcaacggaga aacaaaagtt gtggcctatt      4800
     ttagtaagaa gttgagtagc actcaacgaa aatatgcaag tgtagaaaaa gagtgtcttg      4860
     gcgtattgat ggctattgag cactttcgtc attttgtaga agggacaaag tttaaagtgg      4920
     tcaccgatgc tcgaagtcta ctttggcttt ttactattgg cattgaatca ggaaactcga      4980
     agttacttcg atgggctcta aagcttcagt cgtatgacat agagttagag tacagaaaag      5040
     gaaaattgaa cgtaacagcg gattgcttat cacggtccct ggaagcaata actccaattg      5100
     accccgatta tgaggattta ataaaacaaa ttatcaaaga tccccaaagc tatcccgact      5160
     ttcgagtcat agataatcga gtttataaat tggtgaaaaa tcaaggcaag attgaagaca      5220
     ctcgattcct atggaaacaa tatctcccaa tatctgagcg agaaagggtg atcaaagata      5280
     tccacgataa agctcatttg gggtttgaca agactctaac cgcggtgaga gaaaggttct      5340
     tttggccacg catgagtact caaatcaaga cattctgccg taattgctta acttgtcaga      5400
     cgagcaaagc cactaatatc aatacgacag cccctataat ggcccagaga aagacggctg      5460
     attatccctg gcagttccta acaatggact atgtaggccc tctgcctgtt tcagggaaag      5520
     gaagaagtac gtgtctgctg gttatcacag acattttcag taaattcata cttgttcagc      5580
     cttttagaca ggcgacggcc gattctttag tccccttcgt tgagaacatg gtgttccagt      5640
     tgtttggagt ccctgaagtc attttaacgg acaatgggac ccagttcctg gccaaatcat      5700
     ttcaagacct actagagcat tacaatgtaa cacattggcg aactcctaat taccatccgc      5760
     aggtaaacga tgcggagaga gtaaaccgtg tcttgacaac ggctatacga gcgtccatca      5820
     agaagaatca taaagattgg gccaacaacg tacaaacaat tgcctgcgca atcagaaact      5880
     cagtgcatga agccacccac tactcaccct actttgtgat gtttgggaga aatatggtct      5940
     cagatgggag agaatatcgg tacctgaggg acaatgtaga agcaaacgac tccaccaaca      6000
     tagagaggga aaaattgtac gcggaaataa gagaaaacct caagaaagcc ttcgaaaaac      6060
     attcgaggta ttacaatttg agagcgaatg ccaactgtcc tacattctca ttgggggaga      6120
     aactattgaa gaagaacaca gaactatcag ataagggaaa aggctattgc gcgaaactgg      6180
     ctcctaaata catccctgct gttgtaaaaa ggaaagttgg ggaacactgt tatgagttgg      6240
     aagacgagaa gggaaagcgt cttggagtgt acaattgtcg gtacctgaag aagctcacct      6300
     cgtcttcata atagaaatag gcgatcaagc tatgcaacct tttaaggcaa cgatgcgtct      6360
     ttgaatgcac aaaaatacat gtttggtatc tcatcttgct cctcgcgaac gagttgagat      6420
     gttggtggtt cagctatggt acctttttgg aaaggaaact aagctccaag ttgtgagcaa      6480
     taaaatcaac ctggttgcat agtagacatt ctcctcgtag atcgagtcga gccatttggt      6540
     aaacagctat gtatactcta agagtggacc acgcagttaa cacctgcacc aaaatacaac      6600
     cagccattct tgaagtgctc ctcaatgagt cgagccgtcc cacaataaca atcaatctac      6660
     tggtgacgaa cttcaagaat gagcatggat aaatggacac aattgaagtg tgagtgggag      6720
     gaataacggg aagcagtgtt ttccagaaag ctatgtacta ctcgggacaa ataaacaagg      6780
     aaaccctgac gaggtaacgt tttatgaacg gaaatgaccc aatttgacga aggaaaggtg      6840
     aaggaatgag ccctgcctaa cctgatttag tccgaatatt aatcgttagt aatcctatcc      6900
     ttattctatg ttagttctta agattattgt tagtcttaga atctaaaatg ctcacatgtt      6960
     ggtttagttt gtaaatattc catgtttttc gtttgtgaac ttcagcggcg acgttcctgt      7020
     tggacaagat ccgttgagcc agtgtttgtg aaccactgcg ttgttgtaaa tagtagtccg      7080
     tagtttcatt caagtcccat ttccattcat tgttggcgag agctgttgtt aatgatcctt      7140
     gttgtagtgt tctggtatca cagcgattgt cctggggtcc cattgataac aatacgtcca      7200
     atatttcata tacttgtctt gtccatagta gtttgtcctt gttatccaat agtagttcgt      7260
     tagccaatcc atcaacatcc agtagtagcg tccaatagcc aattccaatt agaaagtttt      7320
     gctccgagtc catagtctcc attgaataat tctccagtag tagttgcgca atcccacgtc      7380
     gcagcaactg caataaagac acaaagcatt caattctaaa tttggggaaa gtattgataa      7440
     atactccccc cgtaatccat ttccagttaa tggttcagcc agaaaaactc ggtaaaattc      7500
     aaagcaaacg tttccatttc actaaaagca cactttcatg ttcaattttc cactttgttt      7560
     tgatcagttt gacagttcgc ttcgagtcgg tatcgcgcgg tgcgtttagt acttgggtac      7620
     gtatgaagtt agtgtgaagt gaagtgtgaa ggatttgatt cgaggggtgt ttagaggttt      7680
     cggctctttt caaatttcgc ttatcagatt tgaatctggt gtgaaatgtg aataagacaa      7740
     tgtgattacg ttctatgaga gagatggaca atttgcctga ggagaagctt cggggtgggc      7800
     catttctcca tagagcagtt atgtttgcgg tgaattcagc aaagggtcgg tgctcaacgt      7860
     tatgaatgag gtagacctgg aggctgaatg agcctgtttc aggttattca tgaaaatttc      7920
     aattgttttc attctgttcc aggtgaacag ttttgaagac tgattatggg tgattgtttg      7980
     aggattattg tagggagtac aaggcaagcc gtttcgctgc cacttgaacg aacttgtcac      8040
     tgctatacag tgagttagtt gtagaataaa tgttctgatt ggtattatat agtaatgtcc      8100
     attagtttga atatccgtta gttaattgta aatgtgattt gcagctttat tgatgaaagt      8160
     aacagataca ttcgctggag accggagtca attgacgttg atggtcagta gtaggcacgg      8220
     tccgtgatag atcgtgtgct atagatagag gaggagttga ccttcgcggt cgacgatgat      8280
     accatatgac cccgaatgga aagttgattt cagacgttaa gttgcttgtc tagaataaaa      8340
     tattgtatat aatattgaat taacaagtat tttcttatga aaatttagtt gaatcaattc      8400
     aactaaattt tcatacccta agcagggagt gatgtaacgg tatcccgtta cagctatgta      8460
     aataaaacca tatataaata acttgtacat acttgtttgt cgttaatcgt tacaaaacat      8520
     cgcatgcaaa atcatataac agatttagaa ggtaacagct ggtaaatctc acgcaattta      8580
     agttccacag cgcctgcgca taggcaatcg cttgcaatat tgaaatcgcc attcgctggg      8640
     aagtggtatc gctatccgtt gaccctctcg cgagatttaa ttgattgctt gcgatcgggc      8700
     cgaaaaccga aggtcaagtt caaagaagac cttgaaattg gggagaagaa catgaaggcc      8760
     atacttagca attactggtg ggagcgagag gtcgaaaacc ggaaagggaa tgaaaaagct      8820
     aacccgaacg atccgttaaa agacgatggc aattccaagg tttcctatct gagggtttca      8880
     agattcctca tcactttgcc tggatagtcg aaccaataag gaagtgtttg cccgtgtacc      8940
     gcgaaattgt aatttgattc cat                                              8963
//
ID   Gypsy-6_AA-LTR repbase;    DNA;    INV; 387 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AA_;
KW   Gypsy-6_AA-I; Gypsy-6_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-387
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 982-982 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 387 BP; 96 A; 99 C; 99 G; 90 T; 3 other;
     tgtagatagc tcagtgtgaa ctaacaggtt taaatattac aggatagtta gatagtttcc        60
     tccgagtgct gaaaagttag actgtagtga taccaaagtg cagtcagaaa ggtattaaag       120
     tcgtgcgttg cgtgaagtgt gtgctctctt taaccccatt gtcgaacagc cgttcgacgg       180
     ctttatttct cggatttagg aacccgcagc agtgaccgac catccggcaa accaccggcc       240
     cacgcgttac tcgtggccga aggggccgcg ccgccaacat cgcgcccatc gctctgtgac       300
     amcgtcgaag aacatccgtc cgatcacgtg tccagaaaac cgacgctaas gaagttcgtc       360
     cmgtctggta ggtggattga tcccgca                                           387
//
ID   Gypsy-6_ACe-I repbase;    DNA;    INV; 6055 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-6055
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 736-736 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to the consensus. The 3'-end is not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1092..1478,1438..3186,3195..3812)
FT                 /product="Gypsy-6_ACe-I_1p"
FT                 /translation="MIDFETRDIYDFQQLKSELETCYLSKRSTTHLQIEFN
FT                 IIKQKSGENARQYGLRVDNLSMELYESMIEGQGHNSEQKRIILDTIQKQAL
FT                 QNFQIGLRDEIKLLVRSQHYATLQEAIAGATAEEKNQGITWQGPLPKKKIK
FT                 GSLGSNPRYSNLSNHHRGSYCQKCGKMGHSGQECRTSRYADRHLLPKPSGQ
FT                 GNINTAAKYCNYCKKTGHIRNECWTLNGRSGTASGGSMKTHDGKTRRQGTA
FT                 ENKMAMEGGEEADFARTKPARDYQISQVTEVPRASTGLNLINLQIKEFKKG
FT                 KTKFLFDTGAAVTLVKLRNLRGETLIYEDKMTLAGVTGHEITVIGKITATI
FT                 LLDERQIQHPMYVIADDFPIDYEGILGVDFLRKHLAKCDYSNKLLKIGDSI
FT                 LKLYPYKIIRINPRCEAIIEATTTTNNTGIIQAEEAQPGVLIGNCLVQPKN
FT                 HLCLINIINTTETHVEMQVPCVTPIEIASEDICESSIQKGKEEEIKTVISR
FT                 TICIENTLKLEHLNAEEKKSITEICTQYNDIFHLKGDPLTHTNTVAHEIHT
FT                 QVDSAPVNVKSYRIPEKHKEEVHKQIRTMLKDEIIRPSNSQWNAPLLVVPK
FT                 KTDATGTPKLRIVVDFRKLNDLTIGDSFPLPNITDILDQLGNAKYFTTLDL
FT                 ASGYHQIPMTESDKGKTAFSTAYGHYEFNRMPFGLKNAPATFQRLMNSVLT
FT                 GLQGVKCFSISRSMYGAGLQEHNARLIEIFNKLRQHKLKLQPEKCEFLRKE
FT                 VIYLGHVITDDGIKPDPTKLKAISEFPIPVKIKEIQAFIGLAGYYRKFIEN
FT                 FSKIAKPLTKLTKKGEPFVWTVEQQNAFELLKSKLITAPVLQYPDFTREFL
FT                 VTTDASDYAIGAILSQGTLGQDRPIAYASRIMSRAESNYNTTEKELLAIVW
FT                 AVKHYRICMAQNLK"
FT   CDS           join(4032..4781,4576..5040,5127..6053)
FT                 /product="Gypsy-6_ACe-I_2p"
FT                 /translation="MNEYNDADKQRILYEYHNSLLGGHQGTERTIKRIRLK
FT                 HNWPGLTKYVENYIARCETCQKNKLKGRTKAPLEITDTARRPFEKCALDIV
FT                 GPLTMSNHGNKYILTFQDNLTKFSKAIPIPNQEAAEIAKQFTLKIIFEYGI
FT                 PDKVLTDQGTNFVSEMFKNVCKLLKISKVQTTAYHPESNGALERSHRTLAE
FT                 YLRHYINADQTDWDEWVPYAMFTYNTTPHSNRIYSIRISFWIPSNVTLCTD
FT                 KISKSYVLLNALIVPWQSTCDITLTRIKRTGMNGFHTPCSHTTLLHTATGY
FT                 TPFELVFGYQATLPSALTKSPNPTYCYDDYAKELKERLRATNRIAREHIIK
FT                 AKLTAKQQYDKDTKAISFKLGDKVLLHDETLRRGRSKKLDSLWTGPYEIIS
FT                 CQLQDKNRTKNAAYDEPNIHTILKFPLISYPKYDILKVIPLPTPDHDNVFT
FT                 LTEVDQTIIAVDSENQHYMTLTREDLSIRCKQIDYTYICEHTNPIYHENTN
FT                 SLCEIQMYVQNSNSKILCNTRYIKSNHTIWIALENQRAWLYSTPYEQTITI
FT                 DCKNREEYRTKIVRTGQIALYGECKLTTADMTVKTIGTIKATTIQTRLPEY
FT                 NLIRLRKQLEHKDLNQPEVVKLRKIIRDPTELMDLSVKLQDVTAELKNARD
FT                 SSFLPEPIIYTISSSTIILIIVIIVIIVYIINKRKNRGANVTKPKKKGDFH
FT                 RKRQTSVFFFQRGK"
XX
SQ   Sequence 6055 BP; 2305 A; 1228 C; 1174 G; 1348 T; 0 other;
     tttggtggca gcggtgggat acagccttac cataccggaa ttcaccaagg acaacgcacg        60
     tcggaaccaa gcagagcaga ctatgcacat cgacaacccg aggaagcagc aacgaactga       120
     cctcaatatc ggtaacagcg agctgaccat gcagactagg ccaagcaaac tacaagcact       180
     aactgtactt ctactgtaag tcgaaaattt ttgtaaatcg cgtgaatgtc ggacaatact       240
     gataaccttc caccgaacgc atcgtggtta ttaagtccac aagcacagcg cgcaatagaa       300
     cggttaaatt cgccacctgt agcagacgga acggaccgcg acaaccgcga aaatcgagta       360
     aatctcatcg aattaaattc aagcgaagag caagactctc gtgaaaataa caaggtcgta       420
     aattccgaat cgggaaacga cgatgatatt ttagtgacga tagcacagac gataggcgag       480
     acagaataaa tcatagcaga actcctagta gagtcaccct cagacgggaa tactccctta       540
     cgtcatacga cagtagcatt tttaatcctg aagaaaatta cggagataac acggtcatag       600
     aaatgcaccg cactccgcct agtgcaaagc gacaagcacc gacagcaccg tccggagaat       660
     tagcacaagc tgtaatggaa ccacagttac cagctggaaa cgaccataac gatttgcaaa       720
     cagatccctt acgcaacata atgttgggaa ttagagaact ccgggaagaa atgaaagcta       780
     tgcataaaag aataggtaaa ctagaggatc atcgaaatac tcagcacgcg acacacgcgc       840
     ggaacgatta tcgcttagac agcatttacg gacgtacgac cgagaacgta cgcaaccagc       900
     gcacacacac gtaaacgaat atatgaaact taaagaagca cgagaaatga tatccgaatt       960
     cgatggaaat tcacaggcta aactaaaaga atttctaagc gcatgttcat atgccataaa      1020
     aaacataaat ccaatagaat gaaagaacgt tactagatgc tatattgtgc accaagttaa      1080
     aaggcaaagc aatgatagat ttcgagacac gggatatata tgacttccaa caattaaaat      1140
     cggagttaga aacttgctat cttagcaaaa gaagcacaac tcacttacaa atagagttta      1200
     atattattaa acaaaaatcg ggcgagaacg ctagacaata cggcttgaga gtcgataact      1260
     tatcaatgga attatatgag tcaatgatcg aaggacaagg gcataacagc gaacaaaaac      1320
     gcataattct agatactatt caaaaacaag ctctacagaa tttccaaata ggattgcgag      1380
     atgaaatcaa actacttgtg aggtcacaac attatgctac actgcaagaa gcaatagcag      1440
     gggccactgc cgaagaaaaa aatcaaggga tcacttggta gcaaccctcg atattcaaac      1500
     ttgtcaaatc atcaccgagg atcatattgt caaaaatgtg ggaaaatggg acacagtggt      1560
     caagaatgcc gaaccagcag atacgctgac cgacatttgt tgccaaagcc gagcggacaa      1620
     ggtaacataa atacagctgc aaaatattgc aactactgca aaaagacagg acacatccgt      1680
     aacgaatgct ggacgttaaa tggacgctca ggaaccgcat cagggggaag catgaaaacg      1740
     catgacggaa aaacccgaag acagggtaca gcagaaaata aaatggcgat ggaaggagga      1800
     gaagaagccg atttcgcaag gacgaaacct gcacgcgact accaaatttc gcaagtcact      1860
     gaggtgccac gagccagtac agggctgaat ttaataaatt tgcaaatcaa agaattcaag      1920
     aaaggaaaaa ctaaatttct tttcgacact ggagcagcag taaccctcgt aaaactacgg      1980
     aatttgaggg gagaaacgtt aatatatgaa gacaagatga cgttagctgg agttacagga      2040
     cacgaaataa ctgttatagg aaaaataact gctaccatac tattagatga acgccagata      2100
     cagcacccca tgtacgtaat tgcagatgat tttccaatcg actacgaagg catacttgga      2160
     gttgatttcc tacgaaaaca tcttgcaaaa tgcgactaca gcaacaagct tttaaaaata      2220
     ggagacagca tattgaaatt atatccctac aaaataataa gaatcaaccc taggtgtgag      2280
     gcaatcatag aagccaccac aactacgaac aatacgggaa taattcaagc cgaagaagcg      2340
     caaccaggag tacttattgg aaactgtctg gtacagccaa aaaatcatct ctgtctgatc      2400
     aatatcataa ataccacgga gacgcatgta gaaatgcaag taccttgcgt aactccgata      2460
     gaaatagcgt cggaagacat ttgtgagtcg tctatacaaa agggaaaaga agaagaaatt      2520
     aagacagtaa tttcaagaac catctgcatc gaaaatacat taaagttaga gcatttaaat      2580
     gctgaggaaa agaagagcat aacagaaatc tgcacgcagt acaatgacat attccatttg      2640
     aaaggagatc cattgacgca taccaatact gtcgcacatg aaattcacac gcaggtagac      2700
     agtgcgcctg ttaacgtgaa atcgtatcgg atacccgaga agcataagga agaagtgcac      2760
     aagcaaatac gcacaatgct taaagacgaa ataatacgac caagcaatag tcagtggaac      2820
     gcgccattac ttgtagtacc caaaaagact gatgcaacag gaacacctaa attacgcata      2880
     gtcgtagact ttagaaaatt gaacgacttg actataggtg attcttttcc tctgcctaat      2940
     ataaccgata tattggatca gctaggaaac gctaaatact ttactacatt agatctagcg      3000
     tctggttacc accaaattcc catgactgag tcggataaag gcaaaactgc tttttcaacc      3060
     gcttatgggc attacgaatt taataggatg cccttcggac tgaaaaatgc gccagccact      3120
     tttcaaagat taatgaattc tgttctaact gggttacaag gtgttaaatg ttttagtata      3180
     tctagatgac atagtcgatg tacggagccg gtttacagga gcacaacgcg cggctcatcg      3240
     aaatattcaa taagctgaga cagcataaac taaaattaca gcctgagaaa tgcgaatttc      3300
     tcagaaaaga ggtcatttat ctagggcatg taataaccga tgacgggatc aaaccagatc      3360
     cgactaagct aaaagctata agtgaatttc ctattccagt aaaaataaaa gagatacaag      3420
     cattcattgg attagcagga tattacagga aatttatcga aaatttttcc aagatcgcca      3480
     aacctctaac taaactgaca aagaaaggag aaccattcgt atggacagtc gaacaacaaa      3540
     atgcgttcga attgctaaaa agtaaattga ttaccgcacc cgtgctccaa tatccagatt      3600
     tcacacgaga atttcttgtg actaccgacg catctgatta cgcgatcggg gctatactct      3660
     ctcaaggaac tttgggtcaa gacagaccaa tagcatacgc tagtcgcata atgtcaagag      3720
     cggagagtaa ttacaatact accgaaaaag aattattagc catcgtttgg gcagttaagc      3780
     attaccgtat ttgtatggca caaaatttaa aataataact gaccataagc ctttagtgtg      3840
     gttgtttaat gtaactgacc ctggatcaag attaatccga tggagactca aattagagga      3900
     atatgattac gagattattc atcgtgcagg caagatgcac atgaacgcgg acgcattaag      3960
     ccgatgcata agtactatta cctcaccaga agatacgaca aacgaagaca cacaaaggaa      4020
     atagcgataa aatgaacgaa tataacgacg cagataaaca acgaatactt tatgaatacc      4080
     acaattcgct cttaggagga catcaaggaa cggaaagaac tattaaacgg attcgattga      4140
     aacacaattg gccaggatta actaaatacg tagaaaatta tatcgcgaga tgcgaaacat      4200
     gccagaaaaa caaattaaaa gggagaacaa aggcgccact ggaaatcaca gatacagctc      4260
     gacgaccctt cgagaaatgt gctttagaca tcgtcggccc attaacgatg agcaaccatg      4320
     gaaataaata tatattaacc ttccaagata atctcactaa attcagtaaa gctataccta      4380
     taccaaatca agaagccgcc gaaatagcaa aacaatttac actcaaaatt atttttgaat      4440
     atggaatacc tgacaaagta ttgaccgatc agggcacaaa cttcgtaagt gaaatgttta      4500
     aaaatgtctg taaactatta aaaatcagta aagtacagac aactgcgtat catcctgaga      4560
     gcaacggtgc attagaacgc tctcatcgta ccctggcaga gtacttgcga cattacatta      4620
     acgcggatca aacggactgg gatgaatggg ttccatacgc catgttcaca tacaacacta      4680
     ctccacacag caacaggata tactccattc gaattagttt ttggatacca agcaacgtta      4740
     ccctctgcac tgacaaaatc tccaaatcct acgtactgtt atgacgatta tgccaaggag      4800
     ttaaaagagc gactacgggc gaccaatcga atcgctagag aacatataat taaagctaaa      4860
     ctaaccgcca aacaacaata cgataaagac actaaagcta tctcattcaa actaggagac      4920
     aaggtattgc tccacgacga aactctgcga agaggtcgat cgaaaaaatt agattcatta      4980
     tggacaggac catatgaaat tatcagctgt caattacaag ataaaaatag gacgaaaaat      5040
     taaatgtata cacgtcaatc gcctaaaagc atttatcgaa cactaataga ataaagaaga      5100
     tggaaggaag atgaaaatat atataagctg cgtatgacga accaaatata cacaccattt      5160
     tgaaattccc tctaatctct tatccgaaat atgatatact caaggtcata ccattaccca      5220
     cacccgacca cgataatgta ttcactctga ctgaagtaga tcagaccata atagccgtag      5280
     atagcgaaaa tcagcattat atgacgttaa cacgcgaaga tttaagcata agatgtaaac      5340
     aaattgacta tacttatatc tgcgaacaca ccaatcctat ataccacgaa aacacaaatt      5400
     cgttatgtga aattcaaatg tatgtgcaaa attctaattc taagatattg tgtaacacgc      5460
     gatatattaa atctaatcat accatatgga tagccctcga aaatcaacga gcatggctat      5520
     actccacccc ttatgaacaa acaattacta tagactgtaa aaatcgcgag gaatatagaa      5580
     cgaaaattgt aagaacggga caaattgcgc tatacggaga atgtaaatta acaactgcgg      5640
     acatgactgt aaaaacaata ggaaccatca aagctacaac cattcaaact cgcttaccag      5700
     agtacaattt aatccgtttg cgaaaacagc tagagcataa ggacttaaac caaccggaag      5760
     tagtaaaatt aagaaaaatt attcgcgacc cgacggaatt aatggatcta agcgtcaaac      5820
     tacaagatgt aacagcagaa ttaaaaaacg cacgagattc atcatttctg ccggaaccca      5880
     ttatatatac aatttcgagt agtactatta tattaattat tgtgattatt gtaataattg      5940
     tatatattat caacaaacga aagaatcgcg gggcgaatgt aacaaagccc aaaaagaaag      6000
     gagattttca cagaaaacgt caaacctccg ttttcttttt tcaacggggg aagga           6055
//
ID   Gypsy-6_ACe-LTR repbase;    DNA;    INV; 512 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-512
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 737-737 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 512 BP; 155 A; 138 C; 101 G; 117 T; 1 other;
     tgttatgacc caaataggtc atacccaaaa tctacgtctg cagaatttct gcagatcagc        60
     agttaaagca tcacaaatca agtcacctac ttttgatttc aaaaccgatg acatacttta       120
     tctttaaaat gcaaccacgc attaattcgg cctaatttgt aaatataaaa gcgtaagcct       180
     cgagcacctc ggggccgttc cgaaaaagtc aagaagacac acgactactg tgagaatctc       240
     cgttactgcg agcgctactg cgagacgtcg taagattgta acacatcgaa gtactcgtaa       300
     gtggaaataa aacttcttac accacgaacg ctggcctata ttaattggag gacctcgagc       360
     ccttaccaaa cgacaccgcc acgtccaatc tgtgattccg ccacgccctg agcggcacgt       420
     cgtaccttga cggtacgact ggttaacggc tgacccgtaa attctataaa cgatgccckg       480
     agcggcaccc ttgcaccctg agcggtacaa ca                                     512
//
ID   Gypsy-6_AEc-I repbase;    DNA;    INV; 10810 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 19.03, Created)
DT   01-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AEc-I.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-10810
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 667-667 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           60..1625
FT                 /product="Gypsy-6_AEc-I_1p"
FT                 /translation="MNTRNSGNKSEVESLYKTAIENLNKLKSSTQNTLHTS
FT                 TPLKSSESESEAAGFSLNESEISDNSKTLVFDGSADSEDIITQPAREFGGI
FT                 TSENKRRTIVAIPKSRGPDETMTHQNLFATLKYAVEAVPFFDGKNIPLNYF
FT                 IEGCEEAKSMLPDEAESQFTKIIRTRIVGEARRTIQDQDFNSVAQLTKYLK
FT                 QVYGASKNIYQLQGELGRIYQQNEEDVITYANRVKILGKQIMEAHKISGNA
FT                 LSDQSIKTSLEKDMCKCFIRGLKPEIEQRITRNLGVQETVADALRIERELH
FT                 SMTDLRQNQESTSSKALNTNKLRETCQICYKEGHLASNCRKLTNFGTEILI
FT                 CQICKKRGHSADKCRLRDPQARQSVNILQGNNIICQICSRSGHNAKNCRTD
FT                 NNNSQNKSSVICQWCDKPGHSANNCWKKQNEQHNAVNKVKIVCQICNNFGH
FT                 NAKNCRSKIGQNAASSDSLFCRYCKGQGHLLETCELRIASNNRRKINEQGN
FT                 SGDPSKSGVAQGSERVSHPSTSKKGQ"
FT   CDS           6708..8669
FT                 /product="Gypsy-6_AEc-I_3p"
FT                 /translation="MMDCCIKGITVIFILIIWTQGTYGIIGYDCGSAAANL
FT                 TTLSLLNVEECDIPPQNVNSSKIYIQVLQLNDFKSVKVIQCKVEIDRTVKR
FT                 CGMFSHTMDVYNGQFSYIADVSRDACRRMHTYGSFEIAGTHITGLLSNQTA
FT                 SRPIVLAGHVDNDGVCTGSAYSDPYGNWGNVIVLGSLKITLQDYIADVRIN
FT                 TNRVHLRSGVTCELSSTHCTDIEGGDTFWDPVPVDHCRGSDYGVLYNGYAN
FT                 KILDATNERSQTVYSITTTNMILSLTSTGTYTTCGHTLTRTEHPKLIIFET
FT                 TFGAEVFKSSGFIAVNMDIFTYVNSKFVYVERHVRTQINQLYRNILLQQCQ
FT                 LEYRMMQNALSIAARSPDVFAYHFMKGPGYMALLAGEVIHMVKCVSVEVKL
FT                 ARTTECYEQLPVIRGNETYFLTPQTHVLIRHGTQITCNSFAPTMYLLGDSW
FT                 YKIMPKPVETLPPTIMKPSTKPSWKYTSPGALATSGIYSQSDLEELKDHIM
FT                 FPAERPAILNTMARGILGRSTVINGGSLSNLIDEASIERIAISAWEKFWNK
FT                 FLIFGNISAGLIGVYLIARLIKLLLDTFVHGYALHTVYGWSVYLLGAVWDS
FT                 LTQLLLHLGRDKTRDVNPSAPDLELQEHNETETKLEPIYPLLPLREESTYT
FT                 LELKG"
FT   CDS           join(1736..2422,2407..2745,2738..6682)
FT                 /product="Gypsy-6_AEc-I_2p"
FT                 /translation="MLDTGSGPNIIKENFVPKDSIVNYSNILKLNGINEYP
FT                 VYTLGEIILPLFGEKITFHIVSGNFPILQSGILGNDFFKQTSSKIDYAKGY
FT                 LDVSGVNIPFFSPETIIAPPRSESLFYVRIGNPEIKIGYVPKLKIAHGIYL
FT                 GDTIVENVSGKAYLSVISTLDEEVEVQVPTLRLKPLNELFDNDSSSIEMRD
FT                 NQNEIANAQSCLTHPRDIQIHFEDFSNDASSNNDGITNARNYERVVVLTGD
FT                 KSNRKINESFEVFDENKLMRGIKKSRKNSIPNIHRGEYFYISSEPEILESK
FT                 ILGEGSYQTSPENLNNSENFGEGSYQTSPENLNNSENFGEGSYQTPLRIKE
FT                 LNNSGIAEESFHTSLLNSTPVDCKEVNNQISLCNATQFYQREPKEKSSTLE
FT                 KIKLPRVGIPAKNDNHQNDSSHITIDELLERMQSCNPYINVRNSKENKPSS
FT                 KILASTQNQSQEMIDKFMRKRKSKHKERTEQECRNEPTKNIPRECLVVSEK
FT                 IGKDRLTEITELLRLEHLSFQEKTSVMKLITDSQDRFHIPGEKLSATNILQ
FT                 HQISTTDDRPINTRQYRFPQIHKEEINRQVEELLEGGIVKPSQSPYNTPIW
FT                 IVPKKEDTKGNKRWRMVLDFRALNEKTVGDAYPLPNIIDILDQLGGAQYFS
FT                 VCDLASGFHQIKMDPVDSHKTAFTTPFGHYEFDRMPFGLKNAPATFQRLMD
FT                 LVLSGLQGEELFVYMDDIVIYAASLEEHERKYNLLIERLRKADLKLQPDKC
FT                 EFLKTEVTYLGHVISKDGVKPDPKKLEAVRQFPRPKTPKNIKQFLGLAGYY
FT                 RRFIPNFSKLTKPLTNLLKNDTKFEWTIDQEDSFQALKEKLCEEPVLQYPD
FT                 FSKPFILTTDASGIAIGGILSQGEINKDRPIAYASRTLTENEIKYDTYEKE
FT                 ALAIVYCVKHFRPYLYGRKFTLVTDHKPLLWFKNAQDANMRILRWRLKLAE
FT                 YDYDVVYKAGKTNVNADALSRNPVDLEEANCNIINHHKPLNLNDPKDAETI
FT                 SKMLEESDEEDEEDEDFKLYLTDDEPLEDLXPDDHPPEEGTNSTSLTQKET
FT                 EESQEPQAMEKATTRNTPRNNKMQTRSQTAKNRDAQQDKLPRDFPQQENET
FT                 ERIKDRNDSLDGEGDAESDNEEENQEKEEFEEGHKIQKLKGKTGPIIVNDQ
FT                 IIKNNILDSRELLFLRKDNVAYFVDTNGRPLDSGSQKLFERNEIPRLGDLA
FT                 LGKAKVVKYKKHYHLALPISEEQREGPTMTLTQISAVIKDLRFVTENLKLE
FT                 TVSIAKTDYVNNVPWSNIKIALQLVFVDSTTKLIICNGLVKYPPKDLRSTI
FT                 IGEMHCLPTGGHRGVTKTYNRIKHKYHWENLKSDVQRYIQQCLQCQLKKLV
FT                 RVKTKQPMIITDTPGSSFDKVAMDIVGPLPKTGRGNEYILTLQDQLTKFCM
FT                 GIPLSDQTSETIAEAFVDRFICVLGAPKAILTDQGRNFISELMKKIAKIFR
FT                 IRKFRTTAFHPQSNGSLERSHHALGEYLKQYANEQKQWDRWIGLAMFNYNT
FT                 SVHEATKHTPYELVFGKIARVPSNELFNPEDKLANYDDYLINLVTQLHAIQ
FT                 TNARENVIEAKVKSKKHYDKKINPQKFKPGDHVFLLKGPKPGKFGDQYTGP
FT                 HEVLEILNKNNVKIKIKKNSRIVHPNRLRISHIKPVHNN"
XX
SQ   Sequence 10810 BP; 3879 A; 2119 C; 2075 G; 2734 T; 3 other;
     gaccaaatga atttttgggg gctcgtccgg gattacaagt gcgatcttag gagacgggaa        60
     tgaatacgag aaattctggc aataaatctg aagtagaaag cctttataaa actgctatag       120
     aaaatctgaa taagttaaag tcgagtacac aaaacacatt acacacctcc actcccctca       180
     aatcctccga atctgaatct gaagcggcgg gtttctcttt gaatgaatca gagatttcag       240
     ataattctaa aactcttgtg tttgacggtt ccgccgactc agaggacatw atcactcaac       300
     ccgcgcgcga attcggtggt ataacgtctg aaaataaacg tagaacaatt gtggctatcc       360
     ctaaatcgag gggacctgac gaaaccatga cgcaccaaaa tttatttgct accttaaaat       420
     acgctgtcga agccgtaccc tttttcgacg gcaaaaacat ccctttaaac tattttatcg       480
     aaggatgcga ggaagcaaaa tccatgttac cggatgaagc tgaatcgcaa tttacaaaaa       540
     tcataaggac aagaattgtg ggtgaagcgc gccgcactat acaagatcag gactttaaca       600
     gtgtggcaca attaaccaaa tatttaaaac aagtttatgg cgcttcaaaa aatatatacc       660
     aactgcaagg cgagttaggc cgtatttatc aacagaatga ggaggacgta atcacatacg       720
     cgaatcgggt aaagatttta ggaaaacaaa taatggaagc ccataaaatt tcgggaaatg       780
     ccctttccga tcaaagtatt aaaacatctt tagaaaaaga catgtgtaag tgttttatta       840
     gaggattgaa accagaaatt gagcaaagaa taacaaggaa tttaggcgtt caagaaacgg       900
     tagccgacgc gttacgaata gaaagagaac ttcattcgat gacagatttg cgacagaatc       960
     aggaaagtac atcgagcaag gcgctgaata cgaataaatt acgagaaacc tgtcagattt      1020
     gttataaaga aggacattta gcttcaaact gtagaaaatt aactaatttt ggaacagaga      1080
     ttttaatatg tcaaatctgc aagaaacgcg gacacagcgc tgacaaatgt cgacttcgcg      1140
     accctcaagc acgacaatcc gttaacattt tacagggaaa taatattatt tgtcaaatat      1200
     gttctagatc agggcataac gccaaaaatt gtcgaactga taataacaat agtcagaata      1260
     aatcttctgt aatctgtcag tggtgcgata agccaggtca ttcggctaat aactgctgga      1320
     aaaaacagaa tgagcaacat aacgcagtta ataaagtaaa aatcgtctgt caaatctgta      1380
     acaattttgg gcataatgct aaaaattgtc gatctaagat agggcaaaac gctgcatcct      1440
     cagactcatt attctgccgg tactgtaaag ggcaagggca tctcctcgaa acttgtgaat      1500
     tacgaattgc aagcaataac cgaagaaaga taaacgaaca gggaaactcc ggcgacccct      1560
     cgaaatcggg tgtggcacag gggtccgaac gagtctcaca cccgtcgaca tcgaaaaagg      1620
     gccagtaggc aaaaacgcgt tagaaatacg tcccgtaact gtgaacctcg acaagcatag      1680
     tcgcgtgcct accgttcagg taaacttttg cgagtcaaca ccacccgtag cttttatgtt      1740
     agataccggt tccgggccaa acataatcaa ggaaaatttt gtacctaagg acagtattgt      1800
     caactatagc aatattctaa aattaaatgg cataaacgaa tatcccgttt atacgctggg      1860
     agaaataatt ttacccctct ttggagaaaa gattacattt catattgtat caggtaattt      1920
     tccaatctta caatccggaa tattaggtaa cgatttcttc aaacagactt cctcgaaaat      1980
     tgactacgcg aagggatatt tagatgtatc aggagttaat atacctttct tttcaccaga      2040
     aaccatcatc gcaccaccac gatcagaatc tttattttat gtgagaatag gaaatccgga      2100
     gataaaaata ggatatgtac cgaaattaaa aatagcacat ggaatttacc taggagatac      2160
     aatagtagaa aacgtttctg gaaaagcata tttaagcgtc ataagcacgt tagacgaaga      2220
     agttgaggta caagtaccaa ccttgcgcct caaacccctg aatgaattat ttgacaacga      2280
     tagctcaagc attgaaatgc gtgataatca aaacgaaatt gcaaatgcac aaagttgtct      2340
     tacccatcca agggatatcc aaatccattt cgaagacttt agtaacgatg ccagttcaaa      2400
     taatgacgga attacgaacg cgtagtcgtt ctgacaggag acaagagtaa cagaaaaata      2460
     aatgaaagtt ttgaggtatt tgatgagaat aaattaatga gaggaattaa aaaatcaaga      2520
     aaaaattcta ttccaaatat tcatcgaggg gaatatttct atatctcctc cgaacccgaa      2580
     atcctagaat ccaaaatcct tggagaggga agttaccaaa cctctcctga aaatttaaat      2640
     aattcagaaa attttggaga gggaagttac caaacctctc ctgaaaattt aaataattca      2700
     gaaaattttg gagagggaag ttaccaaacc cctctgagaa ttaaataatt ctggaattgc      2760
     agaggaaagt ttccatactt ccctgttaaa ttctactcct gtcgattgca aggaggtaaa      2820
     taaccaaatc tcgctatgca atgcgactca attctatcaa agggagccaa aggaaaagag      2880
     ctccactcta gaaaaaatta aattaccaag ggttggaatt cccgcaaaaa atgataatca      2940
     tcaaaatgat tcctctcata ttactatcga tgaacttcta gaaagaatgc aatcatgtaa      3000
     tccttatata aatgttcgta attcaaagga aaataaacca tcttcaaaaa tcctggcgtc      3060
     tacacaaaat caatctcaag aaatgataga caaattcatg cgcaaacgta agtcaaaaca      3120
     caaggaaaga actgaacagg aatgtcgaaa cgaacctacg aaaaatattc cacgcgaatg      3180
     cttagttgta tcggaaaaga tcggaaagga tagactcaca gaaattacag aactattgcg      3240
     tttggagcat ttgagtttcc aggaaaaaac aagtgtaatg aaacttataa ctgacagcca      3300
     ggacagattt cacatccctg gagagaagtt gtcagcaaca aatatattac aacaccaaat      3360
     atctacaacg gatgatcgac ctataaatac gcgacaatac agattcccgc aaattcataa      3420
     agaagaaata aatagacagg tagaagaact gttagaagga ggcatcgtaa aaccttctca      3480
     atcaccgtat aatacgccta tatggatagt tcccaaaaaa gaagacacaa agggaaacaa      3540
     acgatggaga atggtattag atttccgagc cttaaacgaa aaaactgtcg gggacgcata      3600
     cccgttacct aacattatcg acattctgga tcaattaggc ggagcgcaat atttctcagt      3660
     atgcgactta gcatccggat ttcatcaaat aaagatggat cctgttgaca gtcataaaac      3720
     tgcatttaca actcctttcg gtcattatga atttgaccga atgcctttcg gattaaagaa      3780
     tgcacccgct acttttcaac gattaatgga tttagtatta tcaggattgc aaggcgaaga      3840
     actatttgtg tatatggatg acattgtcat ctacgctgct tcattagaag aacacgaaag      3900
     gaagtataat ttgttgatag aacgattgcg caaagctgat ttaaaattac agcctgacaa      3960
     atgcgaattc ttgaaaaccg aagtcactta tttggggcat gtaattagta aggatggagt      4020
     taaacccgat ccgaagaaat tagaggctgt aaggcaattt ccaaggccca aaacgccgaa      4080
     aaatatcaaa caatttcttg gattagccgg atattaccga agatttatac caaatttttc      4140
     aaaattaacc aaacccctca ccaatttgtt aaaaaatgac actaaatttg aatggacaat      4200
     agatcaagaa gactccttcc aagcattaaa ggagaaattg tgcgaagaac ctgtcttgca      4260
     atatcccgac ttttccaaac cttttatatt aactactgat gcttccggaa tagcgattgg      4320
     aggcatccta tcacaaggag aaataaataa agatcgaccg atagcatatg cttcgcgaac      4380
     tctaaccgaa aacgaaataa aatacgacac ttatgagaag gaagctttag ccatagtgta      4440
     ttgtgtcaag cattttagac cttatctata tggacggaaa tttactttag ttacggacca      4500
     caaacctctt ctctggttta aaaatgcaca ggacgcaaac atgcgaatac tacgatggag      4560
     attaaaatta gctgaatacg attacgatgt ggtatataaa gcaggtaaaa ctaacgtaaa      4620
     tgccgatgca ttatcacgaa atccggtaga ccttgaagaa gcgaactgca atataattaa      4680
     tcaccacaag cctttgaacc ttaatgatcc aaaagatgca gaaacgattt ctaaaatgct      4740
     agaggaatca gatgaggagg acgaagagga cgaggatttt aaattatatt tgactgatga      4800
     cgaaccactt gaagacttat twccagacga tcatccacct gaagagggta cgaattcaac      4860
     atctcttaca caaaaggaga cagaagagtc acaagagcca caagctatgg aaaaggctac      4920
     aacgcgcaat actcctcgaa ataataaaat gcagactcga agccaaacag caaaaaatag      4980
     ggatgcccag caggataagc tacccagaga tttcccacaa caagagaatg aaacggaaag      5040
     aataaaagac agaaatgact cattggacgg agaaggcgat gcagaaagcg acaatgaaga      5100
     ggaaaatcaa gaaaaagaag aatttgagga aggacataaa attcagaaat taaaaggaaa      5160
     aacagggcct attattgtta acgaccaaat aatcaaaaac aatattctcg attctcgcga      5220
     gctattattt ttgcgaaagg ataacgttgc atattttgtc gacaccaatg ggagaccgtt      5280
     ggactcaggt tcacaaaaac tgtttgaaag aaacgagatc cctcgcttag gagatctcgc      5340
     tctaggwaaa gccaaagtcg taaaatacaa aaaacactac catttagcct tgcctatcag      5400
     cgaagagcaa cgtgagggac cgacgatgac cctcacccag atttccgccg taataaaaga      5460
     tttacggttt gtcactgaaa acttaaaatt agagactgtt agcattgcta aaaccgatta      5520
     tgttaacaac gtgccatgga gcaatatcaa aatcgcattg caattagttt ttgtggattc      5580
     aacaaccaaa ttaattatat gcaatggact agttaaatac ccacctaaag atcttcgatc      5640
     tacgataatc ggagaaatgc attgtttacc tacgggagga caccgaggtg tcacaaagac      5700
     gtataacaga ataaaacaca aataccattg ggaaaatcta aagtccgatg ttcaacgata      5760
     catacaacaa tgtttacaat gtcagttaaa aaaactagtt cgagtaaaaa ccaaacaacc      5820
     tatgataatc actgatacac caggatcgtc ttttgacaaa gtagccatgg atatcgtagg      5880
     acctttacct aaaactggaa gaggtaacga atatatctta accctgcaag accagttaac      5940
     taaattttgc atgggaatac ccttatcgga tcagacatca gagacaatag cagaagcctt      6000
     tgtcgacaga tttatttgcg tattaggagc acctaaagct atattaaccg atcaagggag      6060
     aaattttatc agtgaattaa tgaagaaaat agcaaaaata ttcagaatcc gtaaattccg      6120
     tacaactgca tttcaccctc agtcaaatgg atccttagaa cgatcacacc acgcattagg      6180
     agaatacttg aaacaatacg caaacgagca gaaacaatgg gacagatgga ttggcttagc      6240
     catgtttaat tacaacacta gcgtccatga ggctacgaaa catactccat acgaattagt      6300
     gttcggtaaa atagcaagag taccgtcaaa tgagctcttc aaccctgaag acaaattagc      6360
     taattacgat gattatctaa taaatttagt tacgcaactc catgcaatcc aaacaaatgc      6420
     tcgtgaaaac gtcatagaag ctaaagttaa atcaaaaaaa cattacgaca agaaaattaa      6480
     tccacagaaa ttcaagcctg gagatcatgt atttttatta aagggaccaa aacccggaaa      6540
     atttggagat caatataccg gacctcatga agtcttggaa attttaaaca aaaataatgt      6600
     taaaattaag ataaagaaaa atagtcgcat cgttcaccct aaccgcttgc gaatttctca      6660
     cattaaacca gttcataata attaaacaaa tcaaatcgac atttcagatg atggattgct      6720
     gcatcaaagg aataaccgtc atatttatat taataatatg gactcaagga acttacggaa      6780
     taataggata cgactgtggc tccgcagcag caaatttaac tacattatca ttattaaacg      6840
     ttgaagagtg tgatattccc ccacagaatg taaactctag caaaatctat atacaagtac      6900
     ttcaactcaa cgactttaaa tctgtgaaag taatacaatg taaagtcgaa atagatcgta      6960
     cagtaaaaag atgtggaatg ttttcacata cgatggacgt atataacggg caattctcat      7020
     acatagccga tgtatctcga gatgcatgtc gacgcatgca tacctacgga agcttcgaaa      7080
     tagccggaac tcacataaca ggtctgctat ctaatcagac tgcatcacgt ccaatagttt      7140
     tggccgggca tgttgacaat gacggcgtat gtaccggcag tgcttattcc gatccttatg      7200
     gaaattgggg aaatgtcatt gtattaggca gcctcaaaat tactttacaa gattacatcg      7260
     ctgacgttcg gataaataca aatcgtgtac acctcaggtc aggagtaacc tgtgaactga      7320
     gttccactca ttgcactgac atagagggag gggatacctt ttgggatccc gtacctgtcg      7380
     atcattgcag aggttccgat tatggcgtac tatacaatgg atacgctaat aaaatacttg      7440
     atgctaccaa tgagcgatct caaacggtct actcaataac cacgaccaat atgattctct      7500
     ctttaactag cactggaaca tataccactt gtggacatac acttaccaga accgaacatc      7560
     cgaaattaat aattttcgaa acgacgtttg gtgccgaagt ttttaaaagc tctggcttta      7620
     tagcagtaaa catggatatc ttcacatacg taaattcaaa attcgtatac gtagaaagac      7680
     acgttcgcac tcaaattaat caactataca gaaatatatt attgcaacaa tgtcaacttg      7740
     aatatcgtat gatgcagaat gcgttatcca tagccgctag atcgcctgac gttttcgcgt      7800
     atcattttat gaagggacct ggatatatgg cacttttggc aggagaagta attcacatgg      7860
     tgaaatgtgt atcggtcgaa gtaaaattag ctcgaaccac agaatgttac gagcagcttc      7920
     cagtaatacg aggaaatgag acatattttc tgaccccgca aacgcatgta ttaatacgtc      7980
     acggaactca gattacctgt aattcttttg cacctaccat gtacctcttg ggagactcat      8040
     ggtataaaat tatgcctaaa ccagtggaga cattaccacc caccattatg aagccttcaa      8100
     ctaaaccgtc atggaaatac accagtccag gagcactagc gaccagtgga atatattcac      8160
     aaagcgatct ggaagaactc aaggatcaca taatgttccc cgcggagcga cctgcaatcc      8220
     tcaataccat ggcaagaggc atattagggc gctcaaccgt aataaatgga ggatcactct      8280
     ctaatcttat agacgaagca tcaatagaaa gaatcgctat ctccgcttgg gaaaaatttt      8340
     ggaataaatt tttaatcttt ggcaatatca gcgctggatt aatcggggta tacctaattg      8400
     ctagacttat caaactgctg ttagacacat tcgtacatgg atacgctcta cacactgtgt      8460
     acggttggtc ggtgtaccta ctgggagccg tatgggattc acttactcaa cttttattac      8520
     atctaggaag ggataaaact agagatgtaa atcctagcgc tccagatctc gaattacaag      8580
     agcataatga aactgagact aaactagaac ctatttatcc tctccttccc ctgagggaag      8640
     aatccaccta tactcttgaa ttgaagggct gagcaattaa agggaaaatc cggcacgatt      8700
     tacaattttc ttttcctctc tcgaaaaaaa aaataataat aaaaataaat aaataaataa      8760
     ataaaattca tatatacata catatacatg gataaataag atagcatgcg gtgccatgca      8820
     ggcattttaa gtatcacgat aaccttttta tagacgatat ggaaatcgaa tgcattaaca      8880
     ccaaactatt ggcgcggagt tcgatggcag tgaaagtcgt aaaagtggac tcacctacga      8940
     tgttctgggt tcaattgaag accgggagcg aagacttcca ggacttgctc gaggaactaa      9000
     cccgaaggat gacacgaagg gggcacatgc tgcgtcatcg tcccgatcac gtcgttgtcg      9060
     gagaactcgt ggccattcgc gaaaaccgag gatggcaacg cggaattata acagacgtca      9120
     acggagacgg aacggtcgcg atctctctac gagactgggg ccgtaacgtg gaacgccgat      9180
     tattcgaggt gcacattctg gaggacaggt tctgccaact aaaatggcaa gggattccct      9240
     gtggattggc tcacaccgct cccttctccg gctcgtcttg gccaaggaag gcaagggacc      9300
     tgaccagatt cctcataaat caacaggagg gacggatgtc cattttgggg accataaaaa      9360
     atgaagctgc gttaattaag ttagaaattc gtagcggagg tgatgctcgc gagtatcatc      9420
     aaatcgacat gaaggaaaca ttgattacat taggttacgc ccaacatagt gataagttga      9480
     gagcgggcac gtacccttcc atataataat aagcataaga atatatatat atatatatat      9540
     atatatacat acaaaataaa catatttgta cacataataa taaataataa atttttttct      9600
     cttttagaat cactatacta ggaaaaacta acaagagatt tatatagctg attcttgctg      9660
     gagtaagatt aattaagaac aacatctttc ctttattctt aggcaaattg tcctgctttc      9720
     ctcctccctc ttaaaagaat tttcctcgta tgcaaagcca cctgatcgtc aattacagcc      9780
     tataattcgc cagtgcacta tcaccatctc cggatcacta gatcgtataa agatctttgt      9840
     actccaatta aatggaaaaa tttagttgac agtttcgata tttgaccgaa accccagtgc      9900
     attacgtcac tgaagggaca cagggtctgc caaagcatcc cgataaaaac ctgcgaccgt      9960
     tgccacgcag aaatcccaaa taaaggatgc tacatggccc ttgcctcgtc catagagagt     10020
     ctgtggacga ctgcaaaaac tgttcgacct gcggtaaaac gacaataaat gtcaagccgc     10080
     ggaggaataa gtgtcgaagc cgcatcaaaa gatttcggca caccgataag acactttaga     10140
     ctggagatgg gaagtacctt cgatcattgc acaggtcgat gcagtaaacc ttttttttgg     10200
     gaggttggcg actttcaggt attcattctt tcaaatattc caacatccac ttgccaatac     10260
     taagggaaaa gaaaaaagga gaaaataata tatatattta acattaaaat atacacacat     10320
     atgtatagag ttatacaaat tctccagcaa agattggcaa atcttagcgt taactaaaat     10380
     tatatgcgca ggagtatctt tcaatgagca cctaagtact ttagttgcat tattataagt     10440
     atatacacat tatggcataa caaggagcac gaaagaattc cgaaaagaat cctatctttc     10500
     tttcctgctt cttaatgaca tgagctataa acttacggac ggatatcaaa atgttgatgc     10560
     ataccaggat attgacattt acttgtaaaa tggaaggacg aaagaactga agaggcgaat     10620
     tttagaaacg tcctattctt tcctgcttct ctaataaacc aagggacgca catgtaagga     10680
     ataacactta aatgtgggtc cgaccatata gtcaaaccca tcaaattgtc gaaagaaaag     10740
     aaccgatacc tttttttttg ttttgcaaat gttgcgttct cacaccccaa catttgtcta     10800
     aggctggggg                                                            10810
//
ID   Gypsy-6_AEc-LTR repbase;    DNA;    INV; 2178 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 19.03, Created)
DT   01-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Panamanian leafcutter ant genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_AEc-LTR.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2178
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 668-668 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2178 BP; 590 A; 655 C; 406 G; 527 T; 0 other;
     tgttacgtcc tacagacgcc acgattcttt tcttcggctc cacgtcgcga ctatggttgg        60
     cgtctgcgag actcgagcgg agccttctga taacggtctg acagaactga aaagagggac       120
     cggacaggct ccgcgaaaac tcgtaaatgc caatcaaccc ggaaggaata acaaccttaa       180
     tgcaggcccg aaaagagaca agattgcaaa agacattata aatgcaccga agtcacgcaa       240
     tagtaaaaat ctaagctttg tcgtcccaga ctgaccaaca atttcatctt aggaaaacag       300
     gcgccacgtc gcgcttaaaa aatcataaaa cgcatgggat aacttcccac ggtagcgtta       360
     tctaagatca gactcgcgac tgacaatggt tgccctgcac gcaaaactag ttgtgcacgg       420
     taaccatctg tttacctagc catattttcc gcgagaataa cagaattcgt catccgtctg       480
     gagcaatctt ggctctttaa agaaaaacgt aaatcacttc ttttcttctc gaaactcctc       540
     taacgatgta ctttagatta acaacgatag gacgctataa aaatcgtaaa tctcgcgtga       600
     cattgcaact aacttttgca tcctagacaa agggcacaac gccctttttt cggggtataa       660
     atagaggtcc cgcggaagcg cagagcgtca gtacggaatt ctaaaccacc cggttcacgt       720
     cagtgacagt acaaaactcg aaatcacccg gttcacgtca gtgaagttcg cgattaaact       780
     attgtcgcgg gcagtgcgga aatcccacag aacccgcgat aatcacgcca gttcgcggtt       840
     tcatacgagt gcgaaattgt gggcaaatcg tcactggaat catcaggcat acgccactgc       900
     gactgccctt ctgacgctct ccgcggacga cggacctcct cggtcaccta ccggaagcta       960
     cccgatatct tgtggacagc cagctaacag taagtcgcca ttccttccgg ttcatcccct      1020
     cgtctccccg catggaaaca catctatata cacttatgcg cgtttccgac gaaacataca      1080
     catattttat tttaaccctt cggattgtag tgcgtactag tacgtccatt agaaaacggg      1140
     gacgaactcc ttacgtccgg aggagtaggc ggaaccgtcc ccttggccaa gccacaatcg      1200
     cgccgccaca accgaccgac gaccaatttc gcgaggtctc ctactcacca acatcagaac      1260
     agacacaacc cttagacctc acctctcctc ctgtcatcga tcctgctatc cgggaaatcc      1320
     taaattattc ccctcctcct ctcgaggaac gattccctcc ccctcctcct ctcgagggac      1380
     gattcctctc cctccttctc tcgaagaagg atttcctctc cctcctccct tggatcagct      1440
     cccaacccct ccttttcaat cgaatcccga gccgatcgac tgggatcggc tattcaggct      1500
     atattcgtcc ccctccaacg aaggggatag aatagtcaca gtttacatcc caggaaaccc      1560
     caccccttac accgtccttt acaagcacct catcccgatg tgctcctgca ccactttcct      1620
     cgcctccaat acccattaac cctttcctct tctccacaca cacacacaca cacacacaca      1680
     cacacacaca cacacacaca cacacacaca cacgcgcgca cgcacacacc cacaacgctc      1740
     cataatgtat atgaataaat ttcttattct tatgtaaaaa aaagggggtt tattatgtgt      1800
     aaaaattttt aatattcctt ctttttatta ttaataaatg taacttagta tatttcccta      1860
     gctgtctttt attgaaatca cctctcgcat tcacttccct ctaaacacct gagatcgcac      1920
     gaggtccagt cccgggtcaa aaggattaag ttccttgacc caaaaagtag gaccgacgtt      1980
     cgcactgtcc ctcggaacag gtgtcatagc gtcccttcgg acgttgaccc atattccggg      2040
     accgaaaagg tgcgtgcgac tcacaggtgt tcgcctctgc gcgtatacct gtgagattga      2100
     gtctaaccgt ccttccatac cctctccatt ctccctcatt gtctccttga ccaaatttcc      2160
     aagggtttgg acgtaaca                                                    2178
//
ID   Gypsy-6_AnFu-I repbase;    DNA;    INV; 4667 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4667
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2892-2892 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..1408
FT                 /product="Gypsy-6_AnFu-I_1p"
FT                 /translation="MLHSPIQRGEPADNSASVTSPAAGHTAPLVIIDLPSA
FT                 PVARTTPVIGATASPVLIEIPAARDFSTVPPDQEVQTMNAMRLKPPELSTS
FT                 DIHTFFFALENWFDVWNLTPRCDAKRFNILKTQIPTSILPEVRHFLENVPA
FT                 TDRYEAAKRALIQYFEESQRSRLHRLLSEMTLGDRKPSQLLAEMRRTAKGA
FT                 MTDLTLVDLWIGRLPPYVQSAVLAAATNVEEKVKVADAVMDSFALYHRTGP
FT                 YQHVSEVRNVEMDRFAQQMNQLSERLEAVLRQDHRREPSRPRSHPRPLHRR
FT                 WANSPARPTVEEICYFHRKFGKDARNCRAPCSFHQRSQGTNASS"
FT   CDS           1412..4642
FT                 /product="Gypsy-6_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="QTASDTKKEVNALATASHRLIVVDRRSRQRFLIDTGA
FT                 DVSVIPRHHSSFPGKPSSMRLFAANKTPIEVYGETLYSLDLGLRRTFLWNF
FT                 VIADVGSAIIGADFLQHFHLLVDLRRKRLVDALTNLQTPGETDRHLQEPTV
FT                 KVCDGTSPYINLLKEFPGLTARIAPGTPLQTNISHRIETTGQPTFARPRRL
FT                 SPEKFTAARAEFESLVQLGICRPSHSCWASPLHMTKKADGTWRPCGDYRTL
FT                 NAQTIPDRYPLPFLQDFTMQLQGKTIFSKIDLHKAYHQIPLHPDDIPKTAI
FT                 TTPFGLFEFTTMPFGLRNAAQTFQRLIHDVLRGLDFVFPYLDDMIVASSSE
FT                 EEHHQHLRQLFQRLEEHQLAINPAKCEFGRSEITFLGHLVNVEGIRPLPER
FT                 VLAISQMKKPSNVMELKRFLAMVNYYRRFLPHAMKTQNILLAMTPGNKKKD
FT                 KAPLVWTPEASEAFECCKEQLKQATLLAHPAPNAELSLWTDASDFAAGAVL
FT                 HQLVNGQLQPLGFFSKKFEKAQLKYSTYDRELTAVYLAVRHFRHQLEGREF
FT                 RIYTDHKPLTYAFRQSHDSTSPRRTRQLDFIGQFTNDIRHVAGEDNITADL
FT                 LSRIEAVHASHTIDYEQLAEEQTRDTELQDLLSGKTPTDLQLQKTPIPGST
FT                 KSLYADCPGGIIRPYVTETFRKPLLHAVHDLSHPGARATAKLMTERFVWVG
FT                 IKRETQEFVKSCIACQRAKVGRHTKSPLVRYPTTAARFAHINVDIIGPFPV
FT                 SNGNRYCLTIIDRFTRWPEAVPIADITATTVVSALLQHWIARFGVPSYITT
FT                 DQGRQFESSLFKELTRTLGTKHIRTTAYHPQANGLIERWHRTLKAAICCKD
FT                 TTRWSEHLPLILLGLRTTHKEDINASPAELVYGTTLTIPAEFLAEKPPPAD
FT                 QSDFAETLQEAMNNIRPPKTAWHSNRTAFVHADLNKCSHVFLRNDTVRPAL
FT                 TTPYQGPYRIIKRGPKSFQILLNGHPSFVSIDRLKPAYTTEEDTTPAEQPR
FT                 PFEEPMMTSQRATPTVDPLSPEQPSATCRPSSSATPTSQTQPQSILRTTED
FT                 NVSTGVTRSQRRVVIPLRYR"
XX
SQ   Sequence 4667 BP; 1192 A; 1468 C; 1052 G; 954 T; 1 other;
     actggtgacc ccgacgtgat atttcctgcc ttcgagacac cgagccttca gcggacgccg        60
     gctttcgagc ccatcattat taacaaattt ccttctcagc aaaccgtaca actggcaccg       120
     taggattcat tccttttcag gaattcctcg agtgttccgt accactggca ccgcaggtta       180
     attccttttc aggaatccta cgggtgttcc ataccactgt cacgwccacc gtccattacc       240
     aacgcccgtt ggttcgtggt tcctgcccac gccgctgctg actcggaaca tctctaccgt       300
     gcgccgcgct gtacgccatt ttgcccgtcg cttcttcgat cttcgcaacg ccgtgatagc       360
     catcgcagac gaccattcgt gctgacgcct cgtgatcgcc atgctgcaca gcccgatcca       420
     gcgtggtgaa cctgccgata actccgcctc cgttaccagc cccgctgccg gtcacaccgc       480
     accgctcgtg atcatcgatc taccatctgc gcccgtcgcc agaaccaccc cggttattgg       540
     tgctaccgca tcgccagtgc tcatcgagat tcccgccgcg cgtgattttt caaccgtgcc       600
     acccgatcag gaggttcaga cgatgaacgc catgcgactc aagcccccgg aactcagcac       660
     ctccgacatc catacctttt tcttcgctct agaaaattgg tttgatgtgt ggaacctcac       720
     tccgcgatgt gatgccaagc gttttaatat ccttaaaacg caaatcccaa caagcatcct       780
     tccggaagtg cgacatttcc tggaaaatgt tcctgctacc gaccgctacg aagccgccaa       840
     gagagccttg atccagtatt tcgaagaatc gcaacgaagc cgcctacatc ggttgctgtc       900
     ggagatgacc ctcggcgatc ggaaaccatc ccagctgcta gcggaaatgc gccgaacggc       960
     aaaaggagca atgaccgacc taaccctggt cgatctttgg attggacgtc tgccgcccta      1020
     cgttcaatca gccgtcctcg ctgctgccac caacgtggag gagaaagtga aggtagccga      1080
     cgcagtgatg gattccttcg ccctttacca tcgaacgggg ccataccaac atgtgtccga      1140
     agtgcgaaac gtggaaatgg atcgctttgc tcaacaaatg aaccaattaa gtgaacgttt      1200
     ggaagctgtg ctacgacaag accatcgccg tgaaccgtcc cgaccacgct cgcatcctcg      1260
     accacttcac cgccgttggg ctaactctcc agcccgacca acagtagagg aaatttgcta      1320
     cttccatcga aagtttggaa aagatgcgcg aaattgccga gccccgtgtt cgtttcacca      1380
     gcgttcgcaa gggaccaacg catcatcctg acagacggcc agcgacacta agaaggaagt      1440
     caacgctctt gcaaccgcaa gccatcgcct catcgtagtg gatcgccgct caaggcaacg      1500
     tttcctcatc gataccggcg ccgatgtttc ggtaatcccg aggcatcaca gttccttccc      1560
     gggtaaacca tcgtcaatgc gtttatttgc cgccaataaa acccctatcg aagtctacgg      1620
     agaaaccctc tattctttgg acttgggatt acgccgaaca ttcttatgga attttgtaat      1680
     agccgacgtg ggctcagcta ttattggagc cgactttctc cagcattttc atcttttggt      1740
     ggacctgaga cgcaagcgcc tggtagacgc ccttaccaac ctacaaacgc ccggtgaaac      1800
     ggatcgacat ctacaggagc ccaccgtgaa agtttgcgac ggaacatccc cctacatcaa      1860
     cctgttgaag gagtttcctg gcctgaccgc acggatagca cctggcacac ccttgcaaac      1920
     caacatttca caccgcatcg aaacaacggg acaaccaacc tttgctcgtc cccgaagatt      1980
     gtcgcccgag aagttcaccg cagcccgtgc cgaattcgag tccttggtgc agctcggaat      2040
     ttgccgtcct tcccacagct gctgggcaag cccgttgcat atgacgaaga aggccgatgg      2100
     aacctggcgc ccatgcggtg actaccgcac cctgaacgcg cagacgatcc cggaccgcta      2160
     tccattgcct tttctgcaag acttcacgat gcagttgcag ggaaagacaa tcttctcgaa      2220
     aatcgatctg cacaaggcct atcatcaaat tccattgcac ccggacgaca taccgaaaac      2280
     agcgatcacc accccgttcg gtttgtttga atttaccacg atgccttttg gactgaggaa      2340
     cgctgcccag accttccagc gcctaatcca cgatgtactc cgcgggctcg atttcgtctt      2400
     tccctacctg gacgatatga tcgtggcatc atcatccgaa gaagagcacc accagcattt      2460
     gcgccaactt ttccagcgtt tggaagagca tcaactggcg ataaatccag ccaaatgcga      2520
     gtttggccgc agcgaaataa ccttcctggg ccacctggtg aacgtcgaag gtatacgccc      2580
     ccttcctgag cgagttcttg ccatcagcca gatgaagaag ccatccaacg tcatggaact      2640
     aaagaggttc ctagccatgg tgaactacta ccgccggttc ctgccccacg ccatgaagac      2700
     gcaaaatatc ctgttagcga tgaccccggg gaacaaaaag aaggataaag caccgctagt      2760
     ctggacacct gaagctagcg aggcattcga atgctgtaag gagcaactga agcaagccac      2820
     cctgttggcc catcccgctc ccaacgcaga gctatcgctc tggacagacg cctccgactt      2880
     cgccgctgga gcagtgctgc atcaactcgt caacggtcaa ctccagcctt tgggattctt      2940
     ctcgaaaaag ttcgagaaag cacagctgaa atactcgacc tacgaccggg agctgacagc      3000
     cgtctacctc gccgtacgac attttcgcca tcagttagag ggtcgtgaat tccgtattta      3060
     tacggaccac aaaccgctaa cttacgcctt ccgccaatcc cacgatagca catcgccacg      3120
     tagaacgcgc caactggatt tcatcggaca attcaccaac gacattcggc acgtagcagg      3180
     agaagacaat atcaccgccg accttctatc ccgaatcgaa gccgtacacg cgtcgcatac      3240
     catcgactac gagcagctag ccgaagaaca aacccgtgac acggagctac aggacttgct      3300
     gagtggaaaa acaccaaccg accttcagct gcagaagaca cctattcccg gtagcactaa      3360
     atccttgtat gctgattgtc ctggaggtat aattcgccct tacgtaacgg aaacattccg      3420
     aaagccactt ctacacgcag tccacgatct cagccaccca ggagcaagag ccaccgccaa      3480
     attaatgaca gaaagatttg tttgggtggg catcaaacgg gagacccagg agtttgtaaa      3540
     aagctgcatt gcctgccagc gagccaaagt aggacgccat acgaagagcc cactggtacg      3600
     gtacccgaca acagctgcta ggttcgcgca catcaacgtc gacatcattg gaccgttccc      3660
     cgtcagcaat ggcaaccgct attgtctgac catcatcgac cgtttcaccc gttggcccga      3720
     agcagtaccg attgcagaca ttaccgcgac aactgtcgtt tcggcactgc tacagcattg      3780
     gatcgcccgg tttggagtgc catcgtacat caccacagac caaggcagac aattcgagtc      3840
     atccttgttc aaggaactga ctcgaacact cggcacaaaa cacattcgaa caactgctta      3900
     tcatccacag gcgaacgggt tgattgagcg ttggcaccgc acgttgaagg cagccatctg      3960
     ctgcaaagac acaacgagat ggagcgaaca tctacctcta atcctgctgg gactacgaac      4020
     cacccataaa gaagacatca acgcatcacc tgccgagctg gtctatggta cgacactcac      4080
     catcccagcc gagttcctcg ccgagaagcc accgccagcc gaccaatcgg acttcgccga      4140
     aacactacaa gaagcgatga acaacatccg tccgccgaaa accgcctggc attcaaaccg      4200
     gaccgcattt gtacacgccg acctaaacaa atgctcccac gtgtttctac gcaacgatac      4260
     cgtccgccct gccctgacga caccttatca aggaccgtac cggattatca aacgaggccc      4320
     aaaatcgttc cagattttgc tgaatggaca tccctcgttc gtatccatcg accgcttgaa      4380
     acccgcttat accaccgaag aagatactac accagccgaa cagccacgcc ccttcgaaga      4440
     accgatgatg acctcacaac gcgcaacacc aacggtcgat ccactatcgc ctgagcaacc      4500
     atccgcaacc tgtaggcctt catccagcgc gaccccaact agccagactc agcctcagtc      4560
     aatattacgg acaaccgagg acaacgtatc gaccggagtt accagatcgc aacgcagagt      4620
     tgtaatccca ctgcgatacc ggtaacaccg ctctaggagg ggagtac                    4667
//
ID   Gypsy-6_AnFu-LTR repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-391
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2958-2958 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 391 BP; 155 A; 86 C; 95 G; 55 T; 0 other;
     tgtggcgacc aatagccaat agccaggaca cagagaagcg ccatctaggg tcaataacga        60
     gaacaagcaa aattgtctag tgggtgccat atggtgcgaa caagtaacaa aggacttagg       120
     ggaacaaaag aatatgcgaa aacagacagg atcaaacacg aaatcgttca aaaacacgga       180
     aataggaaag ttcgagacat ggccagcaca atataaaagc ggcggcatgt ccgaactaag       240
     ttagttatcg ttataccgtc aaccgacaag catctcgctg cagccccgaa ggaagaccga       300
     aggacgacca aagaagtggc caagtaccaa tcgacaaaga aggaaggaag aataaataca       360
     agggctccga actacggaat aaccccccaa a                                      391
//
ID   Gypsy-6_AnMe-I repbase;    DNA;    INV; 6588 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6588
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6818-6818 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2486..3379
FT                 /product="Gypsy-6_AnMe-I_1p"
FT                 /translation="MDTEHWPLQPFNDIADASDLRREWEEWHRAFELIVTL
FT                 KKIETQSEKLAYMLARGGRGLQRIYFNLAAVPGEQHPRAVSIPFKQLPVPE
FT                 YDNAIKRLNHFFLGKRNERIELEVFRSLKQENEESVNQYVLRLRAQASRCD
FT                 FQDRVTKEILHQITIGAKDERVRDKGLEDIMELDELINYAINREVLISQKM
FT                 KIKDKEIEPSIAYVKQQPMITKRKWQDTSCHRCGSWRHNGNSNECYARKAR
FT                 CNACGRIGHFGRCCKTEGENVTKNRFQWKKPKTESSGHMQRNQRRNSDAVD
FT                 NLNEVI"
FT   CDS           3446..6478
FT                 /product="Gypsy-6_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RLTTSRLWENGMVTCTLDHVPVEFLIDSGASVNTVTE
FT                 EVWKTLQEFKADIHDITYDCNKNITAYASKQPIKIILKFKSLVTVNENKPT
FT                 VYAEFFVVQNSNKSLLGKTTAEQLKVLKVGLEVQNLEEKIQPFPKFPNIQI
FT                 RLSINKAIPPKKISYIRVPIALEKKVDRKIQNMLDSDIIEPVLGPPEWISP
FT                 MVVVPKGKDDIRICINMKYPNQAIQREHFPLPVIETLLNKLRGCKIFSKLD
FT                 ITSAYHHIELHPDSRVVTTFMTSKGLMRFKRLMFGINCAPEIFQRIMTQML
FT                 IGIDGVVIYIDDIVVAGENKTEHDKRLRQVLGVLKQNNATLNKEKCVISVD
FT                 SLEILGYKICSSGIAPAEDKVEAIKNFRKPATREEARSFLGLVNFVGQFIH
FT                 HLSSRSEPLRKFIRGEVETFGKEQETAFDDLRTELSNNVRELGFYKPEDET
FT                 ELYVDASPSGLGAVLTQRDKEGKSRIISFASKGLTKTERVYPQTQREALAV
FT                 VWAVEKFYPYLFGIKFTIFTDHKTLEYIFEGKHQNGKRACSRAEGWALRLQ
FT                 PYNFVVKYIPGNCNISDSLSRLGSNWDINKPFDEASEHYVYTIDNEYEAIT
FT                 LSEIRSETAQDETMKKVVKAIENQTWGPNLAHYQAFSKELGIIQGMVVRDD
FT                 RIVLPGKLRQKALHIAHAGHPGEVTMKRKLREKMWWPFMDREIESYVKTCS
FT                 GCAAVRKMGTAEPMIRKEMPERPWQDIAVDFFTVKEFGTFLVLADYYSRFL
FT                 KIVEMKNITASKTIEAMETICKDQTFPESIRCDNGPPFSSEEFRSYCKTKD
FT                 IKIVHSIPYWPQMNGLVERNNRGILRTLRIAKAQNSDWRKAIEEYEHMYNT
FT                 TPHSITGKAPLELLNGRPVKGLLPSLKTATDWNRDKDVKERDAIRKMKGKI
FT                 YADEKRRSKPSDIEVGDIVQIWNYHQGKAEPKYGTERFRVIKRVGNDTIVV
FT                 SNEGVKYRRPVAHLYKIPLVEAIKTKNSQNSKQKDGNQSVGKRPIRVRRIP
FT                 NRLKD"
XX
SQ   Sequence 6588 BP; 2483 A; 980 C; 1501 G; 1624 T; 0 other;
     attggcgcag ccggtaaacg aagcacagaa aagaggaaat ttgaaacgag aaaggtgagt        60
     caagaaattt gagtacaaga agaaaaaaaa atggttcaat taatcatgat aattattata       120
     aaataattgt gaaatgtgcg agtgataaac atgattatgg tagcaaagtg tggtgaaacc       180
     ggttataatc ccgaacgaac aatgtgaagt ccgttataaa acgtaaaaac gaataaacgt       240
     gtggtagtag ttagcaagcg aaacagccca actaacaaga gaataataaa agagtgagaa       300
     tttaaaagct aaaaaaaaaa aaataataaa aataataata ataaaaaaaa aattaaagat       360
     aaacgaagat gtgacaggtt aaaacaaaaa gagtccggat ataccgtagc aaaagtggct       420
     gagaccggtg tggtaccgta gcgcccagga aagagtccgg atatccgtag cagaattgtg       480
     agaccggttc attccgtagc acgtatttga gtccggctat tccatagcat aaaagagtct       540
     ggaaaatccg tagcatagcg aggaggagtc cggtagaaca ccgcagcacc aaggggtccg       600
     gatataccgt agcaaaagtg gctgagaccg gtgtgatacc gtagcgccca agaaagagtc       660
     cggatatccg tagcaaaatt gtgagaccgg tacatcccgt agcacgtatt tgagtccggt       720
     tattccatag cataaagagt ctggaaaatc cgtagcatag cgagaccggt aggataccgc       780
     agcgcaaaga aaatttgata aagcgaaaag taaccgaaac cagtgcggaa ccgtaacata       840
     aaaaaaggta tataaagcaa atgaaattaa ggaaattaga aaagataaat aatgtgcgac       900
     atcaaagtgt acagagtgga atgaaatgaa aatgttgcaa aagaaaggac aaattcgaat       960
     aatgtaaatg gtcaaacaga gcgtgtggtc aaattgtatt gctagaagtt ggttaaaata      1020
     gtctgtgcct gaataaacaa gtggcaatct agacaactga ggcacgacaa attttttaga      1080
     agacaaaaga aaaaaaatga aaagacatgt gtggtccgac gtgcattcgc ggtgagagta      1140
     ggtaaatttt aagttctttg gaacagtaag acagcagcta ttgtgtgacg gattcgaccg      1200
     atgggacagc gtgtgtgtgt gatataataa acaagtgacc atctggacaa ctgaggcacg      1260
     acagattttt ttttagaaga caaaagaaaa aaaatgaaaa gacatgtgtg gtccgacgtg      1320
     cattcgcggt gagagtgggt aaattttaag ttctttggaa cagtaagaca gcagctattg      1380
     tgtgacggat tcgaacgagg ggacagcgtg tgtgtgtgtg atataataaa caagtgacca      1440
     tctggacaac tgaggcacga cagatttttt agaagacaaa agaaaaaaaa tgaaaagaca      1500
     tgtgtggtcc gacgtgcatt cgcggtgaga gtaggtaaat tttaagttct ttggaacagt      1560
     aagacagcag ctattgtgtg acggattcga acgaggggac agcgtgtgtg tgtgatataa      1620
     taaacaagtg accatctgga caactgaggc acgacagatt ttttttagaa gacaaaagaa      1680
     aaaaaatgaa aagacatgtg tggtccgacg tgcattcgcg gtgagagtag gtaaatttta      1740
     agttctttgg aacagtaaga cagcagctat tgtgtgacgg attcgaacga ggggacagcg      1800
     tgtgtgtgtg tgtgatataa taaacaagtg accatctgga caactgaggc acgacagatt      1860
     ttttagaaga caaaagaaaa aatatgaaaa gacatgtgtg gtccgacgtg cattcgcggt      1920
     gagagtaggt aaattttaag ttctttggaa cagtaagaca gcagctattg tgtgacggat      1980
     tcgaacgatg ggacagtgtg tgagtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg      2040
     tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg aatgtgagtc ataataaaca agtgacaatc      2100
     agtgacaata gaaccaacga atttagcgac ggttgagaac ccaaggcgaa ttgagcccaa      2160
     ggcggggcag tagattaata ttttgttgtt tacttatttt ctttactaca tgtagcaatt      2220
     attagtaaat gaaatttgag taaatattat tccacatagg ttttaaatta catacaagtg      2280
     tgagtgtagg tgcatttcat attgatcaag ttattatgaa agagatagag cgaagtttat      2340
     tgcggaatat tattgctggt tcagtagtgt atttagagta tgggaaataa taacagcaat      2400
     aaatgtcata aaattaaaaa aaaaggaaaa taaacaatta atacaaatac taatatttat      2460
     aattaaaaaa aaaaattaat tacagatgga tactgaacat tggcctttgc agccattcaa      2520
     tgatattgcg gatgcatcgg atctacgtcg cgagtgggaa gaatggcata gagcatttga      2580
     actgattgtc acactgaaga aaatcgaaac acaaagcgag aaattagcat acatgctggc      2640
     acgtggaggt cggggcttgc agcggatata tttcaactta gcagcggtgc caggagaaca      2700
     acatccaagg gcagtttcga taccgtttaa acaattacca gtaccggaat acgacaatgc      2760
     catcaaacga ctgaaccact tctttctcgg gaaaagaaat gaaaggatag agttagaagt      2820
     gtttcggtca cttaagcaag agaatgaaga gtccgttaat caatatgttc tgcgtcttcg      2880
     ggcacaagct tctcgatgtg actttcagga ccgagtaaca aaagaaatat tacatcaaat      2940
     aacaatagga gcaaaggacg aaagagttcg ggacaaaggc ttagaagaca taatggaatt      3000
     agatgagctt attaattatg caattaacag ggaagtatta ataagccaga aaatgaaaat      3060
     taaagacaaa gaaattgaac cgtcaattgc atacgtcaaa caacaaccaa tgataacaaa      3120
     aagaaaatgg caagatacta gctgccaccg ttgtgggtca tggcgacata acggaaattc      3180
     taatgagtgt tatgctagaa aagctcgttg taatgcttgc gggcgcatag gacatttcgg      3240
     tagatgttgc aaaacggaag gagaaaatgt aacaaagaat aggtttcaat ggaaaaaacc      3300
     gaaaacagaa tcatcaggac atatgcagcg aaatcaaaga cgaaactcag atgcggtaga      3360
     caaccttaat gaggtaatat aataataatg agggctcgta gaatccttgt agatttgaca      3420
     attaaaataa ttaatattat tatagcgatt aacgacatca cggctttggg agaacggtat      3480
     ggtcacatgt acattggatc atgttcctgt tgaattttta atagattcag gtgcgtctgt      3540
     gaataccgtt acggaggaag tatggaaaac attacaagaa ttcaaagcag atattcacga      3600
     tatcacgtac gactgtaaca agaatataac tgcgtatgcg agcaaacaac ccataaaaat      3660
     aattcttaaa tttaaatcat tagtaacagt taacgaaaat aagccaacgg tatatgcgga      3720
     attctttgta gtgcagaata gcaacaaatc attgttaggc aaaactactg ccgagcagtt      3780
     aaaagtgtta aaagtaggtt tagaggtaca gaatttagaa gaaaaaatac aaccttttcc      3840
     aaaatttcca aatattcaga tcagattatc cattaataag gcaatacccc caaaaaaaat      3900
     atcgtatatt agagttccaa ttgcgttaga aaaaaaagta gaccgtaaaa ttcaaaacat      3960
     gcttgattct gacataattg aaccagtctt aggccctccg gaatggatat ccccaatggt      4020
     agtagtacca aagggaaaag atgatataag aatttgtatc aatatgaaat atccaaacca      4080
     agctatccaa cgcgaacatt ttccgttacc agtcattgaa acattgttaa acaagttacg      4140
     tggatgcaaa atattttcta aactcgatat tacttcggca tatcaccaca ttgaacttca      4200
     cccagactca agagtagtta ccactttcat gactagcaaa gggcttatgc gtttcaagag      4260
     attaatgttt ggaattaatt gtgcaccaga aatattccaa agaattatga ctcaaatgtt      4320
     aataggaata gatggagtgg taatttacat tgacgatata gttgtagcag gtgaaaataa      4380
     aacagaacat gataaacgct taaggcaagt gttaggagtc ttaaaacaaa ataacgcaac      4440
     cttgaataag gagaaatgtg taattagtgt tgacagttta gaaatacttg ggtacaagat      4500
     atgttcgtca ggaattgcac ccgctgaaga taaagtagaa gccattaaga attttagaaa      4560
     accagcaaca agggaggaag ctagaagttt cttaggtttg gtaaactttg tagggcaatt      4620
     tatccatcat ctatcgagta ggtcagaacc tctacgtaag tttattagag gagaagtaga      4680
     gacatttggc aaagagcagg aaacagcttt tgatgacctg cgtacagagt tgtccaacaa      4740
     tgttcgtgaa ttggggttct ataagcccga ggatgagaca gaattatatg ttgacgcatc      4800
     tccatcggga ttaggagctg ttcttaccca gagagataag gaaggaaaat ctcgcattat      4860
     aagtttcgcg tcaaagggtc taacgaaaac agaaagagtc tatcctcaaa ctcaaaggga      4920
     agctttagca gttgtatggg cagtggaaaa attttatcca tacttgtttg ggataaagtt      4980
     tacaattttc accgaccata agacgttaga atacattttt gaaggaaaac accaaaatgg      5040
     taaacgggca tgttcaagag cggaaggttg ggctttgaga ttacaaccat acaactttgt      5100
     agttaaatac attcccggaa actgtaatat ttctgatagt ttatcgagat tgggatcaaa      5160
     ttgggatatc aacaaaccat ttgacgaagc ttcagagcat tacgtctata ctattgacaa      5220
     tgaatacgag gcgataacat taagcgaaat caggtcagaa acagcacaag atgagacaat      5280
     gaagaaagtt gtcaaagcta tagaaaatca gacatggggc ccaaacttgg cacattatca      5340
     ggcgttcagc aaagaactag gaattataca aggtatggtt gtgagagatg acaggatagt      5400
     tttaccagga aagctgagac aaaaagcatt acatatagct catgcaggac acccaggaga      5460
     ggtaacaatg aaaagaaaat tacgagagaa aatgtggtgg ccatttatgg acagggaaat      5520
     agagtcgtac gtcaaaacgt gtagtggatg tgcagcagta aggaaaatgg gcacagcaga      5580
     accaatgata cggaaagaaa tgcctgaacg accatggcaa gacatagcag tagatttttt      5640
     tacggtaaaa gaatttggaa cgttcctggt actagctgat tattatagta gatttttaaa      5700
     aattgtggaa atgaaaaaca ttacagcaag taaaactatt gaagctatgg aaacgatatg      5760
     caaagatcaa acattccccg aatcgatcag gtgtgacaat gggcctccat ttagtagtga      5820
     agagtttaga tcgtattgca aaacaaaaga tataaagata gtacattcaa ttccctattg      5880
     gccccaaatg aacggactag tagagcgaaa taatagagga atactaagaa cattaagaat      5940
     tgcaaaagca caaaacagtg attggcgtaa agctattgaa gagtatgaac atatgtacaa      6000
     tactacacca cattccataa caggtaaagc ccccctagaa ttattaaatg gaaggccagt      6060
     taagggacta ttaccatcat taaaaacagc aacagattgg aaccgcgaca aagatgtgaa      6120
     agagagagat gcgatacgga aaatgaaagg aaaaatctat gcggatgaga agagacgatc      6180
     caaaccttct gacattgaag taggagatat agttcaaata tggaactatc accaaggaaa      6240
     ggcagagcca aaatatggaa ctgaaagatt tagagtcata aaaagggttg gaaacgatac      6300
     tatagtagta agtaatgaag gagttaaata tcgccggcct gttgcacact tatataagat      6360
     tcccctggta gaagcgataa aaacaaagaa ttcacaaaat agtaaacaaa aagatggtaa      6420
     ccaaagtgta ggtaaacgtc caatacgagt tcgaagaatt ccaaataggc taaaggatta      6480
     agataatagt tttttttttt ctctctcgta tatcaatgta aatattaaaa tacaatgtaa      6540
     gttttgtagt acttttgaaa ttggattaac ttcagaggag aaaaagga                   6588
//
ID   Gypsy-6_AnMe-LTR repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-228
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6809-6809 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 228 BP; 84 A; 23 C; 70 G; 51 T; 0 other;
     tgtagagttg cgtacaagca gtgttgtatg caagagagag aacaaacata gaatgagggg        60
     aagtgtgaga acgttgacta aaagagaggg aattgtggga gagaacattg gtcactgttg       120
     gaagttatat aaagagaacg ttggtgagaa taggcagatg gtgaataaac ggtgacgagg       180
     aaacatcaac gataccgtgt ttatcattta aaagaggagg attctaca                    228
//
ID   Gypsy-6_AnSt-I repbase;    DNA;    INV; 4125 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4125
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 791-791 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..4112
FT                 /product="Gypsy-6_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTTPVEPNAAWIVEMFKQQQQMLNQQQQLLNSVMSVM
FT                 KAKDSECPEKAIDAIAGQIKEFHHTEETNFEGWFVRYEGLFLDDAKRLDDG
FT                 TKLRLLLRKIGVAEHERYISSIMPKQPKDFDFTTTVEKLKKLFGDRESTVC
FT                 KRFKCLQMVKESHEEYRAYACRVNKKVVEAKLAGIAEEEIKCLLYVCGLKG
FT                 DADADIRVRLLSKMEDNVNITLDQLCGESQRLLNLRQDSKLISTASQEVRA
FT                 VRKSVKDFRSNPVRDKEQKAVSCWLCGDKHFARECSFATHACKDCNKVGHK
FT                 EGFCKTANRNRFRYRSRNANVKVVTVNKIQAKRKYVDVILNGRRLQLQLDT
FT                 GADITIISRGTWRQIGSPKLDSATVSAKTANGETLKLLGEWKGIMEVNGRR
FT                 KQVLVRVVEEDLLLFGTDSMDVFGLWKQPLDAFCNIISSTKDAGAAVLEQF
FT                 PALFSSELGRCDKVKVSLQLKDNVNPVFRPKRPVAYAMQTMVEDELGRLER
FT                 LGIITPTDSSEWAAPIVVVRKANGTVRICGDYSTGLNDALQPHQYPLPIPQ
FT                 DIFTAIGKSVVFSQIDLAEAFLQVEVCEKSRELLTINTHKGLYRFNRLPPG
FT                 VKTAPGAFQQIVDSMLSGLEGVAGYMDDIIVGGADVKSHLKNLQAVLSRIE
FT                 EFGFKLRVEKCSFLKPQIRYLGHLLDGQGLRPDPSKIEAILKMPAPSQLSE
FT                 VRSYLGAINYYGKFVPQMRDLRYPLDLLLQKGGEFKWTAECQKSFERFKEI
FT                 LSSDLLLTHYDPSKDIIVSADASLVGLGATISHRFPDGRVKVIQHAARALT
FT                 KVEMNYSQPDREGLAIVFAVTKFHRMLFGRKFTLQTDHQPLLRIFGSRKGI
FT                 PLYTANRLQRWALALLLYDFTIEYVATDKFGNADILSRLMNRHEKPEEDYV
FT                 IASIQLEDDMNHLVTSATQALPLNFKDLERGTQTDSMLRKVFQFVQNGWPM
FT                 GEEKSVELKQFFVRREALSTVGNCLLFGERVVIPANMRDRVLKLLHRGHPG
FT                 VTRMKALARGYVYWPKMDSEIEDVVKTCQPCASAAKSPEHCAPVDWPKSTA
FT                 PWQRIHIDYAGPIEGEYYFLAVDSYSKWPEIIPTKHTTAQVTVKILRGLCA
FT                 RFGMPETIVSDNGTQFTSSEFGDFCIQNGIHHVRTAPYHPQSNGQAERFVD
FT                 TFKRAVKKIREGNGGMHEALDEFLLAYRTTPNKTLEQKSPGEMMLNRKVRT
FT                 ALELLRPSSRNFARQPAVNDTIVGRNFCVNDKVYVKRYHRNGWEWVSGVVT
FT                 DRLGSVMYMIDICGRSLRYHVNQLRIRHAADDRQQTQLPLHVLLDAWDMPG
FT                 SIEPASSSLVPSTTTEHVEPDNDNSQQTCSDAAPRRSARLKKQPVWMSDYR
FT                 N"
XX
SQ   Sequence 4125 BP; 1148 A; 867 C; 1134 G; 976 T; 0 other;
     gtggcgacga gttatataaa atgactacac cggtagaacc gaacgcggca tggatcgtcg        60
     agatgttcaa gcagcagcag caaatgttaa atcagcaaca gcagctgttg aacagcgtga       120
     tgtcggtgat gaaggcaaag gacagcgaat gtcctgaaaa agcgatagac gccatcgccg       180
     gacagatcaa ggaatttcat catacagagg aaacaaactt cgaaggctgg tttgttcgat       240
     atgaagggtt attcctggat gacgcgaaac ggttggatga tggaacaaag cttcgtcttc       300
     ttcttcggaa gataggtgta gcggagcacg agcgctacat aagctccatc atgccaaaac       360
     agccgaagga tttcgatttc accaccaccg tggagaagct gaaaaagctg tttggagacc       420
     gcgaatctac cgtgtgcaaa cggtttaagt gcctgcagat ggtgaaagag tcacacgagg       480
     agtaccgagc gtacgcgtgc cgtgttaata aaaaggtcgt ggaagctaag ttggcgggga       540
     ttgcagagga ggagattaaa tgtttgttat acgtgtgtgg actcaaggga gatgcggatg       600
     ccgatattcg agtacggttg ctctctaaga tggaagacaa cgtaaacata acgctggacc       660
     aactatgtgg tgaatctcaa cgcctgctaa acctgcgcca agacagcaag ctgatatcta       720
     ccgcttcgca ggaggtacgg gctgttagga aaagcgtcaa agattttcgc agcaatcctg       780
     tgcgtgataa agaacaaaaa gcagtaagtt gctggctgtg tggtgataaa cacttcgcga       840
     gggaatgctc atttgctacg cacgcatgta aggactgcaa taaggtaggc cataaggagg       900
     gattttgtaa gacggcgaac cgtaatcgtt tccgctatcg gtctcgcaac gcaaacgtta       960
     aggtggtaac ggttaacaaa atccaggcca aacgcaaata cgtagatgtg attttaaacg      1020
     gacgtaggtt gcaactgcag ttagataccg gtgccgatat cactataata tcgaggggta      1080
     cgtggcgtca aataggcagt ccgaaattag acagtgcaac agtgtcagcc aagacggcca      1140
     atggtgagac actcaagctg ctgggagaat ggaaaggtat tatggaagtc aatggacggc      1200
     gtaagcaggt gttagtgcgt gttgtggaag aggacctgtt gttatttgga acagacagta      1260
     tggatgtttt cggattgtgg aaacagccac ttgatgcctt ctgcaacatc ataagttcca      1320
     ctaaagatgc tggtgcggcc gttttagaac aatttcctgc gttattctcc agcgagcttg      1380
     gtcggtgtga caaggtaaaa gtaagcttgc agctgaaaga caatgttaac cctgttttcc      1440
     gcccgaaacg ccctgtggcg tatgcgatgc agacaatggt cgaagatgag ttgggaaggt      1500
     tggagcgtct cggtattatt acaccaaccg attcctcaga atgggctgca cccattgtag      1560
     tggtgaggaa agcaaacgga accgttcgaa tttgtggcga ctactcgacc ggtcttaatg      1620
     acgcacttca gccacaccag tacccgttgc cgattcctca agacatcttc acagccattg      1680
     ggaagtcggt agtgtttagc caaatcgatt tggctgaggc cttcctgcaa gtggaagtat      1740
     gcgagaaaag tcgtgagttg ttaactatta acactcacaa ggggctttac cgtttcaaca      1800
     gactaccgcc gggggtaaaa acagcacctg gtgcattcca gcagatcgtg gactctatgt      1860
     tgagtgggct ggaaggtgtt gcgggttata tggatgacat catcgtaggt ggtgcagatg      1920
     tgaaaagcca tctgaagaat ctgcaagctg ttttgtcaag gatcgaggag tttgggttta      1980
     agctacgtgt ggaaaaatgt tcctttttga aaccccaaat acgatacctg ggacatctgc      2040
     tggatgggca aggcctacga ccggacccgt cgaaaataga agccattttg aaaatgccag      2100
     cgccatcgca gctgagtgag gttcgatcgt atcttggtgc gataaattat tatgggaaat      2160
     tcgtaccaca gatgcgagat ctgcggtatc ctctagacct tttgttgcaa aagggaggcg      2220
     aattcaagtg gacagccgaa tgccagaaat cttttgagag atttaaggag attttgagtt      2280
     ccgacctact tctgacccac tatgatccgt cgaaggatat aatcgtgtca gcggatgctt      2340
     cattagtagg tttgggagct accatcagtc atcggtttcc ggatgggcgt gtaaaggtta      2400
     tccagcatgc cgcgcgagcg ttaacgaagg tggaaatgaa ctatagtcag ccagatcgcg      2460
     agggtctcgc aattgtgttc gctgtgacga agttccaccg catgctgttc ggacgtaaat      2520
     tcacgctaca aactgatcac caacctctcc tcagaatctt cggctcacgt aaaggaattc      2580
     cgttgtacac tgcgaacagg cttcagcgtt gggcattagc gcttcttctt tacgatttca      2640
     ctatagaata cgtagcgaca gacaagtttg gcaatgcgga catcctctcg agattgatga      2700
     atcgtcacga aaagccagaa gaggattacg ttattgctag tatccagctt gaagatgata      2760
     tgaatcatct ggtgacgagt gcaactcaag ccctgccgtt gaatttcaag gatttggagc      2820
     gtggtacaca aacagattct atgttacgga aggtgttcca gttcgtccag aatggttggc      2880
     cgatgggtga agagaaaagt gtagagctga aacaattctt cgtacggcgg gaggccttat      2940
     ccactgtggg aaattgcctc ttattcggag aacgggttgt gattccagca aacatgcgag      3000
     atcgagtgct gaagctcttg cacagaggac accctggggt aactcgtatg aaggcactag      3060
     caagaggata cgtttattgg ccaaagatgg acagtgaaat cgaggacgtt gttaaaacgt      3120
     gtcaaccgtg tgcaagtgca gcgaagtctc cagagcactg tgcaccggtg gattggccaa      3180
     aatcgaccgc tccctggcag cgtattcata ttgattacgc cgggcccatc gagggagagt      3240
     attattttct ggcagtagac tcgtattcca aatggccaga aataataccg acaaagcata      3300
     caactgcaca agtaacggtt aagatattac gaggactgtg tgcacggttt ggtatgccag      3360
     agacgattgt cagcgacaat ggtacgcagt ttaccagttc ggagttcggg gacttctgca      3420
     tacagaacgg tatccatcat gtgcgaactg cgccgtatca tccgcaatcg aacgggcagg      3480
     ctgaaaggtt cgtggacacc tttaagcgag ctgttaaaaa gatccgcgaa ggaaatggtg      3540
     gaatgcatga ggcccttgat gaatttctgt tggcatacag aaccacgccg aacaagacgc      3600
     tggagcagaa atcgccgggg gagatgatgc tgaataggaa agttcgaacc gctctcgagc      3660
     ttttgcgacc atcttctcgt aattttgcta gacaaccagc ggtgaatgac actatcgtcg      3720
     gaaggaattt ctgcgtaaac gacaaggtct acgtgaaaag ataccatcgg aatggctggg      3780
     agtgggtatc cggagtagtg actgatcgtc tgggaagcgt gatgtacatg attgacatct      3840
     gcggtaggtc tctacgatac cacgtaaacc agcttagaat acgacatgca gcggacgacc      3900
     gtcagcaaac acagcttcca ctgcatgtat tgttggatgc ctgggacatg cctggaagta      3960
     tcgagccggc atcctcatct ttagttccgt cgacgactac ggaacatgtt gagcctgata      4020
     acgacaactc tcagcagacc tgctcggatg cagctccacg tcgatcagca cgattaaaga      4080
     agcagcctgt ttggatgagc gattatcgca attaaagcag gggga                      4125
//
ID   Gypsy-6_AnSt-LTR repbase;    DNA;    INV; 156 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-156
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 780-780 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 156 BP; 53 A; 28 C; 41 G; 34 T; 0 other;
     tgttggagac gtgagcgtag ggttataaac gggttgaagc ttgacagctt ctggggacgc        60
     caagaaaacc gcgcactctt cgttgcaggc tcgggcacaa aagacgtgta caattagaaa       120
     aggaataaaa tatatattgt atcacaagat acaaca                                 156
//
ID   Gypsy-6_BM-I repbase;    DNA;    INV; 5848 BP.
XX
AC   nscaf3093;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_BM_;
KW   Gypsy-6_BM-LTR; Gypsy-6_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5848
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 987-987 (2010).
XX
DR   Genome; nscaf3093; Positions  987761  993608.
XX
CC   Positions [4881-5360] - Integrase core
CC   'GTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           631..1596
FT                 /product="Gypsy-6_BM-I_1p"
FT                 /translation="MSKSDSKKDVREQRVDEEVALNVILKFIKPFNGDREK
FT                 LTAFLRNCDSAISLTSPQQEDIVFKYILSQLEGKAESACAIKDFESWSSLK
FT                 EFLKNQFGERKHYAHLLTDLQDCKQRNQETINQFSLRIETCLQKLLTEITV
FT                 SNPKKSEIAGRIAAMEDLALHTFLLGLIPRIADMVRCRDYKTLNEAINAAI
FT                 SEEKIQQFTFRNNYSKPRFVENSNKRTETVNGPPSRPFNNNNNNQSNSFYR
FT                 NPSICKYCKKPGHILENCRLREYNNKRFSNGSRPFTPSQPQASTSRETNFK
FT                 PSGPRVHFTNDYEDEGRDEIDTPSNNADLN"
FT   CDS           1959..5411
FT                 /product="Gypsy-6_BM-I_2p"
FT                 /translation="MKHKVYEILTQKRYLPYVQLQTPINKNPLTFLMDSGA
FT                 SICVLKKKSIINSQELKENIVKVKGIDSKNDTLKSVGCFDLPLQFNDDLKI
FT                 SHTFHVFDNVDLPYDGIIGNDLFMKYQCRINYQTNCLEINNINVKLSFDEP
FT                 SYIIHARTETVIECSVKNPELKEGIIVDQHICDSLLVSNCVVKVKNNNRIN
FT                 LTILNVSDEQVYLNANLMLTLAPIDLTEYNTVQHDQSTNSIERCNQLSDLL
FT                 RTSHLNQEELYYLNDICFQYADIFHLPGDQLTCTDVMQHEIKTSSSQPINV
FT                 KSYRFPEIHKEEVNSQINKMLDQQIIKPSKSPWSSPIWIVPKREDASGKKK
FT                 WRIVIDYRKLNDITIGENYPIPQINEILDQLGQSKYFTTLDLASGFHQIKM
FT                 SPADASKTAFSVPQGHFQFNRMPFGLKNAPATFQRTMNTVLSGLQGVHCFV
FT                 YLDDIVVYSSDLPLHIEKLTLVFEKLRKFQLKLQPDKCEFLRKEVAYLGHV
FT                 ISNDGVKPNPDNIKAVMQFPVPKSAKDIKSFLGLASYYRRFIPEFSKYAKS
FT                 LTVLLKKDVPFNWTNTQQLAFEQLKEKLVTAPVLIYPDFTKPFILTCDASN
FT                 YAISAILSQGDIGKDHPIAFASRTLNKAETNYSVTEKECLAIIYGTKIFRP
FT                 YLFGRQFKIITDHKPLNWLFNCKDPGSRLIRWRLKLEEFDYEIQYRRGKTN
FT                 TNADALSRYPMNPLQQNDDISMPIPENIDINPNQVRNEEISPVKPFPNLDS
FT                 INNDLPELDLPDNFVLPDSLELPEDFDIPTPQSVEDTDDDTYSKCLKSINN
FT                 KSVIFDTKILEHNENLLKTKLKHIVIPTSIDLDESNRYVPEIIGNIPDPKE
FT                 LLAAERTLYSPLISETNDILHYFLFVKVYHQPIKYTNITIHIYKNTIMYPA
FT                 MTEITKILRENHDIPISGHLGSNRMLKRIQEKYYWRNMKRDVENYVHKCES
FT                 CQANKALRQTNRAPMQITSTSTQPFERVALDIVGPLPEVGINKLRFILTLQ
FT                 DDLTKFSAAYPISNCTAEETSECLIHFITQFGIPKIIITDQGSNFTAELFK
FT                 QTCSFLKIKQLWSTPYHPQTQGALERSHSTLKEYLKSFVDENQSNWPRYVY
FT                 TAMLTYNTTVHCTTNFTPYELVFGHKAIIPSSIYDSSLESTYN"
XX
SQ   Sequence 5848 BP; 2072 A; 1204 C; 940 G; 1622 T; 10 other;
     tttggtggca gcggtgggat tcgaatatcc cagtgtcctt aacccggaag gaactttata        60
     tcaagaaacc tgtgaagtga aatttataaa agtactaaag ttgtatccag aactgaaaga       120
     aagaagttcc cggacccgaa ctcattatag cgagatatat atatactctc tattcctcaa       180
     attcctgtaa caccgtgaag cggaatccaa tagtcaggaa tcccttttgc acacctgact       240
     ctcatatcca gcaccgaatc gacggtgatc tccagttcct gatctaatcg tccatggtaa       300
     acgtatgcca tgcatcttga aaccatcacg aagagttcct gtaagctgtt cctgtaagtg       360
     ttattttcat caccaatgaa cctttgtagt tttgtgcaat taatattgtt cagtgttata       420
     actttagacg tttaaaaaat agaactatat caattttaat tcataagagg cagaaacttg       480
     atccgaggtc gttcttatca atcgtactta gtctaaacaa aacgcgctgc aggtatcgcc       540
     cgcgtattcc tggccattgc aaataaaata tacaactaat atcccgtggg ttggtttatt       600
     tatttaatat ttttataaaa ttagtgcaaa atgtcaaaat cagattcgaa gaaagatgtc       660
     agagagcaaa gggttgatga ggaggttgcg ttaaatgtga ttctgaaatt cataaaacct       720
     tttaatggtg atagagaaaa attaacagca tttttaagaa actgcgatag cgctatatct       780
     ttaacatcgc ctcagcagga agatatagtt tttaaataca tcttaagcca attagaaggc       840
     aaagccgaaa gcgcctgtgc aattaaagat ttcgagtcat ggtcttctct taaagagttt       900
     ctgaaaaatc aattcggtga gcggaaacat tacgcacacc tgctcaccga cttgcaagat       960
     tgtaagcaaa gaaaccagga gactatcaat caattctccc tcagaataga aacctgccta      1020
     caaaaacttt taacggaaat aactgtttct aatccgaaaa agagtgaaat tgcgggtaga      1080
     atagcagcta tggaagacct tgccctccat acattcctat tagggctaat tcccagaatt      1140
     gcagacatgg tgagatgtcg cgactacaaa acattaaatg aagccataaa tgccgcgata      1200
     tctgaagaaa aaattcagca gttcacattc cgtaataatt actctaaacc aagatttgtt      1260
     gagaattcaa ataagagaac agaaacagta aatgggcccc cgtcaagacc ttttaataat      1320
     aacaacaata atcaatcaaa ctcattctat aggaaccctt caatctgtaa atactgtaaa      1380
     aagccagggc atattcttga aaattgcaga cttcgtgaat ataacaataa gagattttca      1440
     aacgggtccc gaccttttac tccttctcaa ccgcaggcgt ccacttctag agaaacaaat      1500
     ttcaaaccta gcggtccccg tgtgcatttc actaatgatt acgaagatga aggacgtgat      1560
     gaaatagaca ctccaagcaa taacgctgat ttaaactaat agatgtcccg tataggtgtc      1620
     ggacgggaca agtctcttcc gataaaaacg atgccgttta tattaaaagt aagaccacgc      1680
     cacagggtaa ccagccccac aaggaaggtc tgaatgctat taaaagtaag accacgccac      1740
     agggtaacca gccccacaag gaaggtctga accttatcaa tagtaagact acgccgcagg      1800
     gtaaccagcc ccataaggaa agtctgaatc cctttaataa taaggctgcg caacagggta      1860
     gccagtccca taaagaagat ccgaattatt ccagtcataa agacaatttg aagggtgacc      1920
     aaacccctaa caaaatatgc gatattaaca ataccgagat gaaacataaa gtttacgaaa      1980
     tcctaacgca aaaacgatac ttaccttacg ttcaattgca aacacctata aacaaaaacc      2040
     cattaacatt tttaatggat tctggagcat ccatctgtgt cctgaaaaag aaaagcataa      2100
     ttaattccca agaattaaaa gaaaacatcg tgaaagtgaa aggaattgat tccaaaaatg      2160
     atactttaaa gagtgtaggt tgttttgact tacccttaca attcaacgat gatttaaaaa      2220
     tcagtcatac tttccacgta tttgataacg tagacttgcc ttatgacggc ataattggaa      2280
     atgatttatt catgaaatat cagtgtcgta ttaactatca aacgaattgc ctagaaataa      2340
     ataatattaa cgtcaaactg tccttcgatg agccatccta tattattcat gctcgcactg      2400
     aaaccgtaat agagtgctct gtgaaaaatc cagaactgaa agaaggaatc atagtagacc      2460
     aacacatttg cgattccctc cttgtttcca attgtgtagt taaagtaaaa aacaataata      2520
     gaataaattt gacaattctc aatgtgtctg atgaacaagt gtatttaaac gctaatctaa      2580
     tgcttacttt agcaccgatt gatctaaccg agtacaatac agtccaacat gaccaatcta      2640
     ctaacagtat cgaaagatgt aaccagttat ccgatctttt aagaacatct catttgaacc      2700
     aagaagaatt gtactacctt aacgacatat gttttcaata cgctgatata ttccatttac      2760
     caggagatca attaacatgt acagatgtta tgcaacacga gattaaaact agttcctccc      2820
     aacctataaa tgtaaaatca tatcgtttcc cagaaataca taaagaagaa gttaactctc      2880
     aaataaacaa gatgctagac caacaaatta tcaaaccatc taaatctcca tggtcttccc      2940
     caatatggat agtaccaaaa agggaagatg ctagtggtaa aaagaaatgg aggatagtaa      3000
     tagattacag aaagctgaac gatatcacta tcggtgaaaa ttatcccatt ccccaaatta      3060
     atgagatatt agatcaattg ggtcaaagta aatatttcac aacattagac ctcgcttccg      3120
     gttttcacca aatcaaaatg tcccccgcag acgcatcgaa aacagcgttc agtgttcccc      3180
     aaggtcactt tcagtttaac cggatgccgt ttggtttgaa aaatgcccct gcaacattcc      3240
     agagaacaat gaatacagtc ttatccggct tacaaggcgt acactgcttt gtttatctcg      3300
     acgatatagt cgtgtactcg tcagatctac ccttacacat agaaaaacta acccttgtct      3360
     ttgaaaaact aagaaaattc cagctcaaac ttcagcccga taaatgtgag tttttacgta      3420
     aagaagttgc ttacctgggt catgtcatta gcaatgacgg cgttaaacca aatccagata      3480
     acataaaagc agtaatgcaa ttcccagtac caaagtcggc taaagacata aaatctttcc      3540
     tgggcttagc ctcatactac cgaagattca tacctgaatt ttccaaatac gcaaagtctc      3600
     tcactgttct cctgaaaaag gatgtccctt tcaactggac caatacacaa cagctagctt      3660
     tcgaacaact gaaagaaaaa ctagttacag caccagtcct tatctatccc gatttcacaa      3720
     aaccattcat cttaacttgt gatgcttcta attacgcgat ttctgctatt ttgtcacagg      3780
     gtgatattgg aaaagatcac ccaatcgcct tcgcgtcaag gacactaaac aaagccgaaa      3840
     ctaactacag tgtcactgag aaagaatgtt tggctataat ttacggaact aaaatttttc      3900
     gtccttacct ctttggtcgt caattcaaaa taataacaga ccacaagcct ctcaactggc      3960
     tttttaattg caaagatcca gggtcccggc ttatccgttg gcgtctcaag ttagaagaat      4020
     ttgactatga aattcaatat agaagaggta agacaaatac taatgcagac gctttatcac      4080
     gctatccaat gaatcctcta caacaaaatg atgacatctc aatgccgatt cccgaaaata      4140
     tagatattaa tcctaatcaa gtacgtaacg aggaaatctc tcctgttaaa ccctttccaa      4200
     acttagactc tataaacaat gacttaccag aattagattt acccgataat ttcgtcctac      4260
     cagatagcct agagcttccg gaagattttg atatccctac tccacaatct gtggaagata      4320
     ccgatgacga cacatactcc aaatgtctga aatcaataaa caacaaatca gttatatttg      4380
     acactaaaat actcgaacat aatgaaaatc ttttaaaaac taaattaaaa catatcgtaa      4440
     tacctacatc cattgatctc gatgaatcaa accgctatgt gcctgaaatt atcggtaata      4500
     tacctgatcc taaagaatta cttgcagcag aaagaacttt atactcacct ttgatatcag      4560
     aaacaaatga cattcttcac tattttctct ttgttaaagt ataccaccaa ccaataaagt      4620
     ataccaacat aacaatacat atatataaga acacaatcat gtatccagca atgactgaaa      4680
     tcacaaaaat attgagagaa aatcatgata ttcccatatc aggccactta ggttctaaca      4740
     ggatgttaaa aaggattcag gagaaatact actggcgaaa tatgaagcga gatgttgaaa      4800
     attacgttca caaatgtgaa tcctgtcaag ccaataaagc attgcgtcaa accaaccgag      4860
     ccccgatgca aatcacatca acatcaacac aaccatttga acgggttgct ctcgatatcg      4920
     tgggccccct acctgaggtc ggaattaaca agttaaggtt cattctcaca ttacaagatg      4980
     accttacaaa gttttcagcg gcctatccaa tttctaattg cactgcggaa gaaacatccg      5040
     agtgccttat tcattttatc actcaattcg gaattcctaa aataataatt actgatcaag      5100
     gatcgaattt cacagcggaa ttatttaaac agacttgtag tttcttaaaa attaaacaac      5160
     tttggtcaac accatatcat ccgcagacac agggagctct cgaaaggagc cattcaaccc      5220
     ttaaggagta cctcaaatcc tttgtagatg aaaaccaaag taattggcct agatatgttt      5280
     ataccgccat gttaacatac aacacaactg tccattgtac aacaaatttt actccttatg      5340
     aattagtatt tggccataaa gctatcatac cttcttccat ctatgattcc tctctggaat      5400
     ccacttataa tagnnnnnnn nnnctaagtc cgtaattctg atttaatctt atcaatgacc      5460
     ctgttggtga tttaaagaaa tatatgtcaa tcaaacacaa gttagaacct ttaaaattgt      5520
     acgatatgca tttagaaaaa cttgtaagtg tttcaaatca tcaattaatg acgaatattg      5580
     ataatattgt gaatacgcct gacccaatta tagaatacga ttcgcattgt cctattatta      5640
     cctattgttt acttatttta ttcatgtttt ttgtatttta taagttatgt aaaagattcg      5700
     gtaaatgtcc tactttccta aacaaaacta agcccgataa tgtattagat gaagtccaag      5760
     aaatgaaaga aattccaatt ccgagaattc ggatatctac ttgaaactta ttttctaaaa      5820
     cctataagtt tcatcttaaa cggggggt                                         5848
//
ID   Gypsy-6_BM-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   nscaf3093;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_BM_;
KW   Gypsy-6_BM-I; Gypsy-6_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-226
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 988-988 (2010).
XX
DR   Genome; nscaf3093; Positions  987535  987760.
XX
SQ   Sequence 226 BP; 70 A; 43 C; 35 G; 78 T; 0 other;
     tgttatatcc ctacatagca tacaataatg cttaccaaac atcaacatca gcatttattc        60
     ccgatgatga tttctagcta gctttttaaa gcagttcggg tcagactttc atcggagtgg       120
     gacgtatacc gagttttcct cactttccct atgaaaacta taaatttagt ctagggagta       180
     ttaaaagtgt ttttttaaaa agaagttcct agtttcaatt ctaaca                      226
//
ID   Gypsy-6_BrCo-I repbase;    DNA;    INV; 5372 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-5372
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1406-1406 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1065
FT                 /product="Gypsy-6_BrCo-I_1p"
FT                 /translation="MAEGNDAGNDIPLEEVDGIIPPGPANNIRGAINTIQI
FT                 KIPPFWKADPELWFLQVEAQFLSAGIRADNTKYNHLVGKLDSDTLTAVSNI
FT                 VKNPPDNGKYQTLKNRLVEVFKESDRQKLKTLFSDLSINDEKPSTLLRKMQ
FT                 DNSCNKVSNELLHELWSNRLPQQIQSILACSTEPLERQVIMADKIYETLDK
FT                 TSIQAFSYGKKSEIDFEKQFCKLEDKIDSLQKKLGYSRSRSSSDKRYRSPS
FT                 RSNSQTRRNPNHCWYHQTHKNKAKRCTNDEPKNKDNPPCTFTRDYKSKN"
FT   CDS           1026..4139
FT                 /product="Gypsy-6_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SALYFHERLQVKKLNSHSNKAQFDRGKTISRLYVQEK
FT                 NSKRNFLIDTGADISVIPPTSKEKSHAPCTFTLHAANGSQIKTYGSKSVTL
FT                 NLGLRRNIRWIFVIADVQQPIIGSDLLEKFDLLVDIKNKKLIDNLTSLTVN
FT                 GIEVQSTTSQSVTTVSNISVYHQIANEFPDILDMNSFKTTNKRHNVKHRIV
FT                 TNCPPLFAKARRLNPEKLQVAKAEFDEMLRLGICRPSNSPWATPLHITPKP
FT                 TGGWRPCGDYRRLNAHTLPDRYPIPNMQDFNYFLHGKKIFSKVDLVRAYHQ
FT                 IPMHEDDVQKTAIITPFGLFEFPFMTFGLCNAAQTFQRFIHEILQGLDFCF
FT                 IYLDDILIASENEEEHKEHLRKLFARLNEYGLVINLNKSIFGQKEIEFLGF
FT                 HIDNHGTKPIKSRVDTILNYPLPQKVHELKQFLGLINFFRRFMPHAAETQI
FT                 PLFSCMKRNVKKDQTPINWTKNMIDAFEKCKTDLANATLLAHPDPKAKISL
FT                 HVDASDFALGGVILQWNNNEWQPLAFYSQKLSEAQTSYSTYDKELLAIYEG
FT                 IKHFRSTLEGTDFTIFTDHKPLTHAFNSKSDKATPRQIRQLNYISQFSTDI
FT                 RHVPGKKNIVADTLSRIATINSIYAISFESSIDYKKLSQAQQNDKKFCENL
FT                 NSSLHVIKTDYKGAKLYCDISTGKLRPVIPPSFRKIIFDNVHKFSHPGIKA
FT                 STDSIKRDFVWPTMSKDIKKFCQSCIPCQKCKITRHNSSPIQPIEVPNERF
FT                 NHIHLDIVGPLNVSEGYRYCITIIDRFTRWPEAIPIKDASAETVAKHLLYH
FT                 WISRFGVPEIITTDQGKQFESDLFDQLNKLLGTKRIRTTSYHPQANGIVER
FT                 WHTTLKNSIKCHNNSNWVEILPLILLGLRSIILPNLNASVSEMVYGSTIRL
FT                 PYHFFNNAEANPTKDPFLFVEKLKRHMNDIQPTESSNHHKQKIFVYKNLKD
FT                 CSHVFVRKDGYKKPLQPNYEGPFEVVKRDKKHFTLKIKGTEKVISIDRLKP
FT                 CFQLSEEKVIQEIKVKKHVTFNLENLVIEDSN"
FT   CDS           4710..5357
FT                 /product="Gypsy-6_BrCo-I_3p"
FT                 /translation="MTSVQQLLQQIANGITELKQDVTAIQRTLVRMEAGTM
FT                 QPPCRTRRRSASRATQTWPGQQQQPNQQAHRFAPYQSGPSNQPVPSSSRNS
FT                 SSVAMQAQPVPSSSRNSSSVAIQAAGPAEIRLSNMRRVLNKAADTPIPRTI
FT                 CINHKRFGKATDIRRCPDWCTMRNPAPANPPMDNELDISDAENLPPPLLPE
FT                 PMERNAIPTAEEMSLELENELLNLSE"
XX
SQ   Sequence 5372 BP; 1918 A; 1189 C; 823 G; 1442 T; 0 other;
     aattggtgac cccgactttg aacgtttact tgtaaacctc gagtcagcaa caaattgtta        60
     aaaactttga tttgattttt acaattcaat caaactttta acacaaaagt ttttgtctta       120
     ctgtccagat caaatatctg tggagacaaa aaccaaaaac ccttcaaacc caactgttga       180
     gtttaccact taataatggc tgaaggtaat gatgctggta atgacattcc attagaagag       240
     gtagatggaa ttataccacc tggaccagca aataacataa ggggtgcaat aaacaccatc       300
     cagataaaaa taccaccttt ctggaaagca gaccccgaac tttggtttct gcaggttgaa       360
     gcccagtttc tctctgctgg cataagagct gataatacaa aatataacca ccttgttgga       420
     aagctagaca gtgataccct tacggctgtc agtaatatag tcaaaaatcc acccgacaat       480
     ggtaaatatc agactcttaa aaatcgatta gttgaagtat ttaaagaatc agatcgccaa       540
     aagcttaaaa cacttttttc cgatctttct ataaatgatg aaaaaccttc caccttacta       600
     cgtaagatgc aagacaactc atgtaataaa gttagcaacg aactcctaca tgagttatgg       660
     tctaatcgat tgccacaaca aattcagtcc attttggctt gttccaccga accgttggaa       720
     cgccaagtaa tcatggctga taaaatatac gaaaccttag acaaaacatc gatccaagcc       780
     ttttcttatg gtaagaagtc tgaaatcgat ttcgaaaagc agttctgcaa gctggaagat       840
     aagatcgatt ctctacaaaa gaaactcggt tattctagat ctcgctccag ttctgataaa       900
     cgatatcgtt ctccctctcg ttcgaacagt caaacgagac gaaatcccaa tcattgttgg       960
     tatcatcaga ctcataagaa taaagcaaaa cgttgcacca atgatgaacc caaaaataaa      1020
     gataatccgc cttgtacttt cacgagagac tacaagtcaa aaaactaaat agccattcaa      1080
     ataaggcgca atttgataga ggcaaaacaa taagtcgcct atacgtacaa gaaaagaatt      1140
     caaaaagaaa tttccttata gatactggtg cagatatttc cgttattcca ccaacatcga      1200
     aagagaaaag tcatgctcca tgtactttta ctttgcatgc cgctaatggt tcgcaaatta      1260
     aaacttatgg aagcaaatcc gtcaccctca atttgggcct ccgacgtaac attcgttgga      1320
     tatttgttat tgcagacgtg caacaaccaa tcatcggatc tgaccttctc gaaaaatttg      1380
     atctcttagt tgacatcaaa aacaaaaaac tcatcgacaa cttaacttca cttactgtta      1440
     atggaattga agtccaaagt acaacaagtc aatcagttac aacagtatct aacatatctg      1500
     tctatcacca aattgcaaat gaattcccgg atattctcga catgaattca ttcaaaacaa      1560
     caaacaaaag gcataacgtc aaacaccgga ttgtaactaa ttgtcctcct ttatttgcaa      1620
     aagcacgacg attaaatccg gaaaaattac aagtagcaaa agcggaattt gatgaaatgt      1680
     tacgtctcgg tatttgcaga ccatcaaata gcccatgggc cactccatta cacataacac      1740
     ctaaaccaac aggtggttgg agaccatgcg gcgattatcg cagactaaat gctcacacct      1800
     tacctgatcg ttacccgata ccaaacatgc aagactttaa ttattttttg cacggtaaaa      1860
     agatttttag taaggttgac ctagttcgag cctatcatca aattcctatg catgaagatg      1920
     atgtacaaaa aactgccata attacaccat tcggtctttt tgaattccca tttatgacct      1980
     ttggtttatg taacgcagca cagacttttc aacgttttat tcacgaaatt cttcaaggac      2040
     tagatttttg ttttatttac cttgacgata ttttaatagc ttctgaaaac gaagaagaac      2100
     ataaagaaca tttacgaaaa ctcttcgctc gtttaaacga atatggctta gtcatcaact      2160
     taaacaaatc tatatttggt caaaaagaaa tcgaattcct tgggtttcat atcgataacc      2220
     acggaacaaa accaattaag tctcgagttg atacaatttt gaactacccg ttaccacaaa      2280
     aagttcacga attaaaacaa ttcctcggct taataaattt cttccgtcgt tttatgcctc      2340
     atgcagcaga aacacaaata ccactcttct cctgcatgaa aagaaacgta aaaaaagacc      2400
     aaacgccaat taattggaca aaaaatatga tagacgcgtt cgaaaaatgt aaaacagatt      2460
     tagccaatgc aacattactt gcacacccag atccaaaagc taaaatctct ttacacgtcg      2520
     acgcttccga tttcgcttta ggaggtgtga ttcttcaatg gaataacaat gaatggcaac      2580
     cattagcatt ctactcacaa aaattgtcag aagctcaaac aagttactca acttatgaca      2640
     aagaattgct tgccatttat gaaggaataa aacacttccg ctcaacacta gaaggaactg      2700
     attttaccat atttacagat cacaaacccc taacacatgc cttcaactca aaatccgata      2760
     aagcgacacc acgacaaata cgacaattga attatatttc tcaattttcc actgatattc      2820
     gtcatgtccc tggaaaaaag aacatagtcg cagatactct atcacgtatc gccactatta      2880
     actcgatcta tgcaatatct ttcgagagtt caatcgatta taaaaaattg tcacaagcac      2940
     aacaaaacga caaaaagttt tgcgaaaacc ttaattctag tctccacgta attaaaacag      3000
     actacaaagg cgccaaatta tattgtgaca tttccacagg aaaactacga ccggttatcc      3060
     ctcctagttt tcgcaaaata atttttgaca atgtccacaa attttctcat cctggaataa      3120
     aggcttcaac agactcaatc aaaagagatt tcgtttggcc tacaatgtcc aaagatataa      3180
     aaaaattttg tcagagttgt attccatgtc aaaaatgtaa aatcactcgt cacaattcaa      3240
     gcccaattca accaattgag gttcctaatg aacgattcaa tcacattcat ttagacatag      3300
     taggaccgct taacgtttcc gaaggatacc gctattgtat aacaataatc gaccgtttca      3360
     cccgttggcc agaagccatt ccaataaaag atgcctcggc tgagacagtt gcaaaacatc      3420
     ttctgtacca ttggatctct cgttttggag taccagaaat cataacgaca gatcaaggta      3480
     aacagttcga atccgatctc tttgatcaac ttaacaaact cctcggaact aaacggattc      3540
     gaacgacttc ataccatcct caagcaaatg gaattgtaga acgatggcac acaacattaa      3600
     aaaattctat aaaatgccat aacaattcca attgggttga aatccttccg ttaatattgc      3660
     taggattacg atcaattatc ctaccaaatt taaacgcttc agtctcagaa atggtctacg      3720
     gttcaacaat acgattgccc taccatttct tcaataacgc tgaagcaaat cctacaaaag      3780
     atccttttct ttttgtagaa aaattaaaaa gacatatgaa cgatattcaa cccacagaga      3840
     gctcaaatca tcataaacaa aaaatctttg tttacaaaaa tcttaaagat tgttcacatg      3900
     tgttcgttcg taaggatggg tataaaaaac ctctccaacc aaattacgaa ggaccatttg      3960
     aagtagtaaa acgagacaaa aaacacttca ctttgaaaat caaaggaact gaaaaagtca      4020
     taagtattga ccgtctcaaa ccgtgttttc aactttcgga agaaaaagta atccaagaaa      4080
     taaaagttaa aaagcacgta actttcaatt tagaaaactt agttatcgag gattccaact      4140
     aactttccta taaatacgca agaaataaac aaaattttca cattaaacag ctgttcttca      4200
     atcgaacaac aactgcgaaa taattcctct actactaaaa atgctaacaa cattgagaga      4260
     cgaatttact caaattaaaa taacaattga tccacaaagt tcagtctctg tttttccgga      4320
     atttattttc gaaaaccagc cgactcaact atcattatac actccgaaca gaattttccc      4380
     actatatcgg ttgtgtgata aaactattaa aatacgtgga actatcttta cgtggcaatt      4440
     ctacacgtca gatacttcac acataattct aggttccgat tttcttcaaa gattcggata      4500
     tattaactaa ggaactacaa agtacactga ataatcactg tacgaataaa tcactctact      4560
     agtttgttca tacgaactac tagatttgaa ttaaattcga tcaacccttc actgacttgg      4620
     cctataaata cggcatacgc cctacaaaat tttatcagtc taataacgat ctttattcct      4680
     taaacatcgt aaaaaataaa aaaagtaaaa tgacttcagt tcaacaactt ttgcaacaaa      4740
     ttgcaaacgg tattactgaa ctcaaacaag atgttaccgc catccagcga actttagttc      4800
     gtatggaagc cggcactatg cagccgccct gccgtacaag acgtcgttcc gcatctcgag      4860
     ccacgcagac ttggcctgga caacaacaac aaccaaatca acaggcccac cgctttgccc      4920
     cgtatcaaag tggcccttca aatcagccag taccatcgtc gtctcgaaat tcatcctccg      4980
     tcgcaatgca agctcagcca gtaccatcgt cgtctcgaaa ttcatcatcc gttgcaatac      5040
     aagctgctgg tcccgccgaa attcgtctat ccaatatgcg ccgtgttttg aacaaggcag      5100
     ccgacacacc aatacccaga accatttgca taaaccacaa aaggtttgga aaggcaacag      5160
     acatccggcg atgccccgat tggtgcacta tgcgcaatcc agctcccgca aatccaccga      5220
     tggacaatga actggacata tctgatgcgg aaaacttacc accaccattg ttacccgaac      5280
     cgatggaacg aaatgccatt ccaactgccg aagaaatgag tttggaactc gaaaatgaac      5340
     tattaaatct ttcagaatag gaggggaggt at                                    5372
//
ID   Gypsy-6_BrCo-LTR repbase;    DNA;    INV; 145 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-145
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1394-1394 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 145 BP; 44 A; 29 C; 26 G; 46 T; 0 other;
     tgtggtggcg atcatagatt gcctttaaat tgtaattaac agagtaacct ccgaacttag        60
     ttataaatac cctgtacgac tgtgaaataa attcattcca gttttggata tagacgagtg       120
     aacaacgcgt ttctcttcct ccaca                                             145
//
ID   Gypsy-6_BTa-I repbase;    DNA;    INV; 5078 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5078
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 585-585 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(323..3262,3255..4211)
FT                 /product="Gypsy-6_BTa-I_1p"
FT                 /translation="MEFLTKPEPVEINDNIKENWEKFKRRWRNYALGAEIT
FT                 EKSEEVQRAIFLNLIGSEAEELINSLALTSNQSKTVDLLVKAIDEYVKPRT
FT                 NVVFSRYQFFTRWQKDGEDFETFLLSLKKLADNCGFGELKTSLIRDRIIIG
FT                 ISNYELRQRMLGEEYDFDRTVKLCRSVESGKLRAKEINDQGTSSTTEVNWV
FT                 SKRHYSRNQRKSQQPSCSSGTGTTTKQPKDSPPTSQRRGKVVDCRNCGTSH
FT                 PINQCPAHKKQCNYCKRLNHFSSMCRSRHNSVLPNSNDKIAPSTANSKAAD
FT                 LVNVHCQCSCSPNSISNPTEISDIHASDYVYISEISVQPTFKLEHFTNQSK
FT                 FSQLEDHSIIDHQLNQSNFDESVKQSIKIHNVSNISKTTDKCWMENLIINN
FT                 NTVSFKLDSGAEVNVLPRQIFDLIKNSTNVLLPNRSVVLGYGGAQIDSCGH
FT                 VVLDCKILNQNQIHKLFFTVVNTGTTPLLGLKSCIDLGFITRNHVHVLFKT
FT                 KDQVVNDNESDFKGLGTFPNKCEIKVDPSAMPISDPPRRLPVRLLEKLKRK
FT                 IAELVMFDIISPDTTSVKGFSNLVIVAKNGKIRLCLDPNNLNKVVTRNFFL
FT                 IPSFEEIKPKLKGKKFFSVLDIKDGFWHCQLTLEASDLCGFHTPFGSFKFL
FT                 RMPFGLINAPKVFQKYLTKYFGDIPNIVIYFDDTLICRETEQEHDIALARV
FT                 LSRARKYNIKFNASKFQFKQPKVRYMGHLISGDGVKPDDDYLRAIQELQIP
FT                 KNRKQLQSVLGTINYIRDFIPNLADLIEPFRNLLKKNTKFLWTPGHTEHFD
FT                 KVKEAICTVTRLHSFDPSKKITVLSDASKFGLGACLLQEGCPVAFASRSLT
FT                 DTETRYAQIEKEMLSIVFALKKFHNLVYGYKIKVENDHKPLEAIFTKNIPR
FT                 VMSNRLQNMLSKIIAYDLKVKNLPGKKMYVADMLSRNFIKTSRPEDEINLE
FT                 EIVHCLDINFQIFNERYQELKINSQTLSDPILIQVTKMHTEGWDKCNDEFL
FT                 LPYFNVRNELAINDGVLFYKNRLIIPSKLQATYVKLLHGEAHLDISKVIER
FT                 AKLICYWPKFVSDIENYVKSCAVCNKFQRKNVKEPLLPHEIPEIPFILRRN
FT                 SRFLKKRTSEVKVDPSLLLFFDGDIEAHDLVLLNSHIIINNSESSTELEDD
FT                 NISEGSEMDVTVIEHNLDKSNADQEITLSSSSSDSSEFLGFNTEPLQSPNN
FT                 SHTSDFLGFNTEPLPSPIHSVASDSQRSNNESSSSCSKTATNIGGAKETAI
FT                 KMSPQTVNKLRHLGRGVPIRKDPNFVYDKPRKAAHLSK"
XX
SQ   Sequence 5078 BP; 1687 A; 978 C; 909 G; 1504 T; 0 other;
     tggcgacgag gatgtaaacg ggtgatcaac gaagcgcagc ataaaatacg gaggtgcgcg        60
     tcgtgaaccg gcacaaaagg cctaaattca accatggcct cgcgctcggt atttaagtga       120
     attcaagtgc aagacatgta atttcgctaa aaatgttcaa ttttagtgta tcgattaagt       180
     tcgaaaatga cttttagtat atcgattaag ttcgaatttt aatttctcaa ttgcacatgg       240
     gtcaatttct tctaagttca tgataatctg tgtcgttatc aaccttcact aattgcaagg       300
     taatcattgt tcggacggta caatggaatt tcttacaaag ccagaaccag tggaaatcaa       360
     tgataatatt aaagagaatt gggaaaagtt caaaagacgt tggagaaatt acgctcttgg       420
     cgccgaaatc accgagaaat ccgaagaggt tcagagggcc attttcctta acctcatcgg       480
     atccgaagca gaagaactta tcaactccct tgctctcact agtaaccagt ctaaaactgt       540
     cgatcttcta gtcaaagcta tcgatgagta tgtcaagccc aggacaaacg tggtattttc       600
     tagataccag tttttcacaa gatggcagaa agacggtgag gattttgaaa cgttccttct       660
     ctcactcaag aagctggctg acaattgtgg ctttggtgag ctgaaaacgt cgctcatccg       720
     tgatcgcatc atcattggca tctctaatta tgaacttcgc caacgcatgc tcggagagga       780
     atacgacttc gataggacgg tcaagctatg caggtcagtc gagtctggga aactgcgggc       840
     gaaggaaatc aacgatcaag ggacatcgtc cacaactgag gtcaactggg tcagcaaacg       900
     gcattacagc cgaaatcaac gcaaaagtca acaaccaagc tgcagctcag gtactggaac       960
     tacaactaaa cagccaaagg acagccctcc aacatctcaa cggcgaggca aagtggtcga      1020
     ctgccgaaat tgtgggacga gccatcctat caaccaatgt ccagcacaca agaagcaatg      1080
     taattactgt aagcgtctta atcatttttc ctctatgtgt agatctcggc ataattctgt      1140
     gttacctaat tccaatgata aaattgcacc ttctacagct aattccaaag cggctgatct      1200
     agtcaatgtc cattgtcagt gctcatgttc tccaaacagt atctctaatc cgactgaaat      1260
     ttcagatatt catgctagtg attatgttta catttcagaa atctccgtcc aaccaacttt      1320
     taaattggag cattttacta atcagtctaa attcagtcag cttgaggatc attcaattat      1380
     cgatcatcag cttaatcaat ctaattttga tgagtcagtt aagcagtcta tcaaaattca      1440
     taatgtgtca aatatttcca aaaccacaga taagtgctgg atggaaaatt taatcattaa      1500
     caataacacg gtcagcttta agttagattc gggagcagaa gttaatgttt taccacgtca      1560
     aattttcgac ctgatcaaaa attcaacaaa tgtgctgtta cccaatcgtt cagttgttct      1620
     aggctacgga ggtgcccaga ttgattcatg tgggcatgtg gtgctggatt gcaaaattct      1680
     taatcaaaat caaattcata aactgttctt caccgttgtc aatactggca ctactcctct      1740
     tctaggtcta aagtcctgca tagatttagg ttttatcacc aggaatcatg tgcatgttct      1800
     atttaaaacc aaagatcagg ttgtaaatga taatgaatcc gactttaagg gtctaggaac      1860
     atttcccaat aaatgcgaaa tcaaagttga tccaagtgct atgccaattt cagacccacc      1920
     aaggcgactg cctgtcagat tattagagaa gctcaaacgt aaaattgctg aactggttat      1980
     gtttgatatt atctcaccgg acacaacgtc cgtcaaaggg ttcagtaatc tggtcattgt      2040
     agcaaagaat ggcaaaatta gattatgcct ggaccccaac aatctaaata aagtcgttac      2100
     acgaaatttt ttcctaattc catcttttga agagattaaa ccgaaattga aagggaaaaa      2160
     atttttctct gttctagaca ttaaagatgg tttctggcac tgccagttga cacttgaggc      2220
     ctctgatttg tgtggttttc ataccccctt cgggagtttc aaattcctgc gaatgccctt      2280
     cggtttaata aacgcaccca aagtttttca aaaatattta acaaaatact ttggggacat      2340
     tccgaacata gtcatctatt ttgatgatac tttaatttgc agggaaaccg aacaggagca      2400
     tgacattgct ttagctagag tacttagtag agcacgtaaa tacaacatca aatttaatgc      2460
     tagcaaattc cagttcaaac aacccaaagt tcggtatatg ggccacctaa ttagtggtga      2520
     cggtgtcaag cccgacgatg attaccttcg ggcgatacaa gaattacaaa ttcctaaaaa      2580
     tcgaaaacaa ttgcaaagtg tcttaggtac cattaattac attcgagatt ttattcctaa      2640
     tcttgcggat ctaatcgaac catttcggaa tctcttgaag aaaaatacaa aattcctttg      2700
     gacgccagga catacagagc attttgataa agtcaaggaa gctatctgca ccgttacaag      2760
     gttgcatagt tttgatccat ccaaaaaaat aacagtgcta agtgatgcgt caaaatttgg      2820
     gttaggcgcc tgtctgttac aggaaggctg cccagttgct ttcgcctctc gtagtctcac      2880
     tgacactgaa accaggtatg cacagataga gaaagaaatg ctcagtattg tcttcgctct      2940
     aaagaaattt cacaacttag tttatggcta caaaatcaaa gtagaaaatg accataagcc      3000
     attagaagcc attttcacca aaaatattcc tagagtcatg tcgaacagac tgcaaaatat      3060
     gttgtcaaaa ataattgcat acgacctaaa agtcaaaaat ctaccgggta agaaaatgta      3120
     tgtagcagac atgctgtctc gaaatttcat caaaacttcc cgcccagaag atgaaataaa      3180
     cttagaggaa attgtccact gccttgatat aaatttccaa attttcaatg aaaggtatca      3240
     ggaattgaaa ataaactctc agtgatccga ttttaatcca agtaaccaaa atgcacacag      3300
     aaggatggga caagtgtaat gatgaatttt tactgccata tttcaatgtt agaaacgagc      3360
     tagccatcaa cgatggtgta ttattttata aaaatcgatt gattatacct tctaaattac      3420
     aagctactta tgttaaacta ctccacggcg aagctcacct tgatatcagt aaggtaattg      3480
     agcgagcaaa attaatctgt tattggccta aatttgtatc tgatatagaa aactatgtta      3540
     agtcttgtgc tgtctgtaac aaatttcaaa gaaagaatgt aaaagaacct ctactacctc      3600
     acgaaatccc tgaaattcca tttattttaa gaaggaactc aagattctta aagaaaagga      3660
     caagtgaggt gaaggtagat ccctctttgt tgttgttctt tgatggggac attgaagctc      3720
     atgatcttgt tttgctgaat agtcatatca tcattaacaa ttcagaatct agcactgagt      3780
     tggaagatga caatatctct gaaggaagcg agatggatgt tactgtcatc gaacataatt      3840
     tggataaatc aaatgctgat caagagataa cattgtcatc ctccagctcc gatagctctg      3900
     aatttttagg gttcaacact gagccattac agagtccaaa caactcacac acatcagact      3960
     tccttgggtt taatacagag ccattaccat ctccaattca ctcagttgcc tctgattctc      4020
     aacgttctaa taatgaatca tcttcaagtt gttccaaaac tgcaacaaat attggaggag      4080
     ctaaagaaac tgcaattaaa atgtctcctc aaactgtgaa taaattaaga cacctaggaa      4140
     gaggtgttcc aattcgcaaa gacccaaatt ttgtttatga taaaccgaga aaagctgctc      4200
     acttgtcaaa gtaaatttta gtatctctga ttcattatgg aataaatttc aaagaaattt      4260
     catgttaatt ttaagtgctc ttattcattc taagtaatgt catatttata agtgactcca      4320
     acaattattt tactcaatct aagtcatgtt atattgtaca attctacata aagcttgtca      4380
     ccgaattaat ttctaaataa ccaatgttaa tccatttaag cccagtggct gtaaatttca      4440
     atttctctcc ataactgcga attaatattt tcaatgggag tctgaacaaa aatgcttcaa      4500
     atctctcata tgtatgtctc ttgatttcgg aattgcaaat catttgaaaa gttgtaaatt      4560
     tcaatttctc tacataactg cgatttaagt acttcaatgg gattctgaac aaaaatgctt      4620
     caaatctctc atatctctct tgatttcgga attgcaaatc aattggaaag ttgtttaatg      4680
     tcctggctaa cacacgttaa ctacagccta tgactaaata cagttaattt cagtaatatt      4740
     tgtcgatttc aaaactgcaa atcgttcaaa tctatgtgaa ctcataagca gtataacttc      4800
     aaccaaattc tgagttcaaa tgtcataaat tgattggttt cataaatgca aattagtcga      4860
     ataaatactg tgtcagtgta caagttctaa ttcctcaatt gtaactgtta aatattttaa      4920
     aaaactattc ttcatgtata attttaaatt tcactgatga aaatcataca cctctggaat      4980
     atttctgact tggactctaa tccctcaatt tcttcgtttg tgtttgcaaa agggagtaaa      5040
     gtgtaaggaa aaaaaaatag aaattgaaaa cggggagg                              5078
//
ID   Gypsy-6_BTa-LTR repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-208
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 611-611 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~98% identical to each other.
XX
SQ   Sequence 208 BP; 52 A; 49 C; 43 G; 64 T; 0 other;
     tgttggatag cctgggttgg ttacccagca caggttggca acactgccct cagagggtca        60
     ggtgaccaca atcgtcatgg cgtcagccga tcatcatgtc gtgataccag tgttaccgtg       120
     tcgtgttcat tcccttttta ttttataata aatatgaata tcgttttaac cgagtgttca       180
     cttattcaga tattacccac accaaaca                                          208
//
ID   Gypsy-6_CFl-I repbase;    DNA;    INV; 3952 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3952
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1018-1018 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 3952 BP; 1231 A; 1116 C; 985 G; 611 T; 9 other;
     aactggtgac cmgccgacgt caggaagagg tacgaccatg ccgaagaagg agagtaccat        60
     catagtggaa gacgacgaga ccagcgtcaa cagagtcgca atgcgcatcc cacctttctg       120
     gccagaagat ccggaacttt ggttcgcgca gctggaaggg cagttcacac taggcgccat       180
     caccgatgat gacgtcagat atggatacgt tctatcaaaa ctagagccac gacaagcgag       240
     ggaaattaaa gacgtaatca ccaatccccc ctccagcaac aaatattcag ctataaagmg       300
     cgcgctgata caacgactga cagattcgca ggagcagcgg atcaggcagc ttctggaaag       360
     agaggagcta ggagacagga agccttcgca gtttctccga cacctatcaa cgctggcagg       420
     aacaacagtc tccgacgact tactgcggac actctggcta ggacgtcttc cgccgcagac       480
     ccaagcaatc ctagcaacga ggaaaagcga caagctgcaa gacgtggcag aacaagcaga       540
     ccgcatccat gaggtcgaca gcagagctct cgttcttgcc gcagatcatc ggccagcagc       600
     agcagcagca gcagccagca gccagagtac actgacgacg cagatggaag cgctcaccct       660
     gcaggtggct actctcaccg agcagctgac aaacatggcc aaagagctgc ggagaggacg       720
     cagccgagca cgaagccggt cacgaggcag acctcgcagt aggacaccag tcaaggaggg       780
     tcttgctact accaccgacg attcggcgca gacgctcgcc gatgtgctca gccatgcaca       840
     ttccagaaaa acgagtaggg cactcattgt tagcggccaa tgacgacagc ccgacacatt       900
     gccgcctata cgtcacagac cgaaacacsa ggacaaagta cttggtggac accggctcag       960
     acgtcagcgt ctttccacaa acatcagtaa acggcaggag acgaccagag gcgtacgaac      1020
     tcttcgcggc gaacggcaca cccatcatca cgtacggctc catcaccatc aagccgattt      1080
     caacttgagg agagcgttcc cgtggagatt cgtggtagcc gacgtgggac agcctataat      1140
     cggagcagac ttcctggcac attacgacct gcttccggac atgaaaaggg gaaaactcat      1200
     agacggcaag acaggcctag cagccacagg cgccagatgc tacaatccgg tcttgtcaat      1260
     caaaacaacg gtggaaaaaa gcgaattcca cacactattg gcgaagtttc cggacatcac      1320
     caaaccaacc agaacaaagg aggtgatagc acacggaacg caacatcaca tccagacaac      1380
     gtcaggcccw ccagaagcca gcaggccacg aaggctggcg ccagacaaac tacacgcagc      1440
     caagacagag ttcgacttac tcctgcaaga aggcatcatc cagccctcaa aaagtgcttg      1500
     gtcgtcgccc ttcacatggt gccgaaaaag gacaagactt ggcgtccatg tggagactac      1560
     aggagattga acgccaggac aatacccgac caatacccga taccgcacat cgaggatttt      1620
     gcacagacgc tctaccagaa aaagatcttc accacgatcg atctggtcag agcctataat      1680
     caaatcccgg tgcgagaaga agatataccg aagacagcga taaccacacc gttcggactg      1740
     ttcgagttca gatacatgcc gtttggatta cgcaacgcag cgcagacgtt ccaacggttc      1800
     atcaacgagg ttttgcacgg gttggacttc tgctacgcgt atatcgatga tatactggtg      1860
     gcatcatcaa gtaaagaaca gcacaaaatc cacctgaacc agttattcac ccgactcgac      1920
     gaatacgggg tcagaatcaa cccagccaaa tgcatcttcg gagcagacga agtgaagttc      1980
     cttggttatc tggtcacgga gaaaggaact caaccactgc cagagaagat agaggcgatc      2040
     aaaagtttcc ctcggccgac tacggttaaa caattacggc aattcctagg gatgattaac      2100
     ttttatcgaa ggttcatccc gagagcagcc gaagaacaag ccacattaaa cgacgtgcta      2160
     aaaggaccta aaatcaaagg aacaacaccg gtagattggg ggccggagca agcacaagcc      2220
     ttcgaccaat gcaaggaaag cctgtcgaga gtcacgctct tagctcaccc agacccagca      2280
     gctagactgg cagtaacaac agacgcttca gacacggcca tgggtgccgt gatccagcaa      2340
     agaaccacta acggatggca gccactggca ttcctgagca agaagctgag cgcagcacaa      2400
     acaaagtaca gcccatacga cagggaacta ctagctatct acatcaccat caagcactac      2460
     cgacacttgc tagaaggcag aatattcaca tattcacgga ccacaagcca ctaatacacg      2520
     ccttcaagaa agatcctatg caaagctcgc cgagacaagc amgacatcta gagttcatag      2580
     gacaattcac gacagacata caacacatag aaggcaagga caacacagtg gccgacgcat      2640
     tgtcacgggt agagaccata cacacagcag tagaactgga cacaatagca caagaacaga      2700
     aggacgacga agagttgcag gaactactgc agggcaaaga taaaattaag ctgacacaaa      2760
     tcccagtgcc mggatcaaag aagtcagcat ggtgcgacac cagcacaccg gttgtccgac      2820
     catacgtgcc gaagagccta aggaagaaga tcttccaata cctacacgga ctggcacacc      2880
     cagggacgaa ggcacggcca aactcgtcgc agaaagatac gtgtggccag gaatccagcg      2940
     agactgcaag gamtgggcac gaacatgcat ccagtgccag aaagcaaagg tgacsaggca      3000
     caaccacaca caaactggaa ctttcacgca accaacgcag agattccagc acatccacgt      3060
     cgacatcgtc ggaccwctac ctaagtgtcc gaaggataca ggtactgctg caccatggtg      3120
     gacaggttca cgcgatgggc agaggcatcc cagtaccgaa catcacggca gaaaccatcg      3180
     ccagacacat tttcacggac tggatagcgc ggttcggcac accagctcga attacgacgg      3240
     accagggccg gcaattcgaa gccgagcttt tccaggacct aaccaagcta actggcacca      3300
     agcacatcag gacaacagcg taccacccag aggcaaacgg gatggtggag aggttccacc      3360
     gccagctgaa ggccgcaatc aaatgccacg agacggaggc atggacccaa gtcctaccgg      3420
     tcatactact cggcatcagg gcagcctgga aggaagacgt gaactccacc ccagcagaga      3480
     tgctatacgg agagccaata cgccttccag gacagttcct ggacagcagc agttcgctca      3540
     ggcaagggga tgaagacacc ttggtaacaa ggctgaggaa ggcaatgatc cgactgcaac      3600
     caacgatcaa gcatcatgcc aagaagacca ccttcgtctt caaagatatg gagacagcat      3660
     cacacgtgtt cgtgcgacac gacgcaccag ccggagctct tcacctgcca tacgacggac      3720
     cattcgaagt gctgaaccga agcgacaaga cgtacaaact ccgagtcaga gggaaggctg      3780
     tcaacatctc agtcgacaga ttgaagccag cctacatctt ggatgacgaa acgccaaccc      3840
     ccgaggtacc aaagactgac ccggaagcta cgtccaagac gacaagaaca gtacgtcaac      3900
     cagtccggtt cacgcccaaa taggaccagc tctaccacaa ccaggggggt cc              3952
//
ID   Gypsy-6_CFl-LTR repbase;    DNA;    INV; 1024 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1024
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1019-1019 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1024 BP; 257 A; 333 C; 273 G; 160 T; 1 other;
     tgtggcgttc tgccatacgc cacacaggcg taacggcgta tagcgccgag cgcctggccg        60
     cacggcaacc taggcgcgca agctagcgcg cggcagcgcg agcatacagg cgccgatctt       120
     cgcgcaagtg agatccggca aggcccgtat ataaggccga ccgcggaaag ccgaaatcga       180
     gtctcagctc gcaagtcaat tcgagaggat aaaccgctca tagacgaaca agctagagta       240
     ctcttttgga gtttcttttg gaactcccgt aaccggcgag tctcgccatw ctccgccagc       300
     ggagccgcat acctcggccg acgtcgacgc cccgatcacc agggcccata cgacagccga       360
     ccagtggagg cgccgaaccg gagagacgag tctcattcga gctgctgccg tggaagctgc       420
     agccgataga cctggagcca cccagattca ccaggccacc tcgtcatctg ctggaagtct       480
     gggacgtgcg catccggcga tacacctcac caaccggacc ttgggcagtt ccaggagctc       540
     tctcgccact gccaccttca ccacctggca gatccaccaa ggcgacgcag actgcagcga       600
     cgagccgagt gcaccggagt acccaggcca ctctccagcc tccagcgact gcggagcagg       660
     gtacgcagtc agactcagac tgggagacga cgacaaccac tgcagccacg cagaccgagc       720
     cagctgcaga agtggacgag aacaacaacc gtcccggagt aaggtggacg agaacaacaa       780
     ccgtccaagg cgcaagctcc gctacacgaa gactctcccg agcatttctt acagggagcg       840
     ccccacctgt aaatacaaac ggcccttttc agggcccctg taaatattgt aaatacacat       900
     agttaaattt tgacaacgtg ttcttaatca gaggcgcacc taactcactc ctgcggcacc       960
     gcttctcctg cctaagttaa ggaacacgcg attaaggcgg acacgcaacg aacgaaccgc      1020
     cata                                                                   1024
//
ID   Gypsy-6_CoFl-I repbase;    DNA;    INV; 11731 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-11731
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2274-2274 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           526..2523
FT                 /product="Gypsy-6_CoFl-I_1p"
FT                 /translation="MMSDYGEEIDNGRDGLNETFSMTQEDSDTITVMLEHD
FT                 PESYALYEKMDKKNQVLMLKIFKNIKPKISFKKNPNTKLAEPTNETAEIEM
FT                 LEIAPEKSELKENAIKENIGVDRKRDQLGVEGLGKTSWQEKYTKRREQENT
FT                 NSEQPFIPFCDWPPLHSNDKNYNYYTSNNRTDRLRFGYEENHNDVYTNTEY
FT                 LFPACDRPTELPINNQAESFQRTQSNIRDNPQHQTMQFFPSNRQQTGVPLA
FT                 LGSNLNILGYLNNAVNGIPLYNGDPVQFPLFEQMVRMIKGTIPVQYEKYFI
FT                 GLLGNKLRGIADDQFCTRLSLFNSIDELLSALSRRFNKIGGIETLAAELKT
FT                 VTQWNNELIMEYCGRVQRLHNGIMMAHEANPYLTRAEKDASKKRSDGEAVR
FT                 QFLYGLKAPYNWNVAGFQPKTLEEAIEAAITVDNELSLRRSMIVQKSRLRA
FT                 NNAERRYDAMVGLIGSDAPVGKSDTDEWDGVADVKYCSYCREHGAHSTSGC
FT                 EKLWQDAKKGIIKNPNVDEEPKKETIEEEGWYDRKVAYNDYHRRYGNDRIF
FT                 DRQQGNNGKRPYNQGNRYQGRKYNYDNNNYYNNNNNSNNYDGNSYNDRKVG
FT                 HNYNRYDHRKDDYRDRRNNQYSNQDNRRDDYRRDNLNSQSARVNSSKTGHL
FT                 NSQDVRRDPQSSGMTKQ"
FT   CDS           2433..8924
FT                 /product="Gypsy-6_CoFl-I_2p"
FT                 /note="reverse transcriptase, and ribonuclease H."
FT                 /translation="SKCEGKQLENRAFKLAGCSTRSPIVGHDKAINEGIYE
FT                 RKLGVLEEGMDNDKHKVSETYATTRENSKAEGKDEQQLSRTVKINLSKIGY
FT                 TPPTVILKSPYINEGATFYADTGAEISIIKENCLDIGVAVNSREKLKIKGV
FT                 THGARQTLGSIRLPLENFMCTLHVVPHDFPIEVEGIIGWDIFKLYNGQINA
FT                 EDNTLKLNGRRIPLRESESFEIVPKTRQVIYAYIKESHRKIKVGWVPLQKL
FT                 TEGILFGNFIATNNNGRVYAECLNISNEIINVPVPVVDLLECETTKKADSS
FT                 DVNGDDVEALERAFVRMFRETENPEENEKLGNEIRNDASCTCTKKNIVGNE
FT                 GCDKDGRDNENTQILEENIKTDVLSCRKARVDKIMELVDISGCNEEEKKHV
FT                 RGLIEIDPYVFGLDGEKLKATNLLKHKINTTTDKPIVTKRYRYPPAVREQM
FT                 KVEIKKLLEQGIIEPSESPYSSNMWIVPKNAGPDGEKRWRVVTDFRQLNEI
FT                 TMGSCHPLPFQSDILEHLATARYITVVDLKQGFFQVEIHEDDAHKTAFSGP
FT                 DGHYQYKRMPMGCTDSPNTFLRAITLALAGLQGHEVEVYLDDIMVFASNLK
FT                 EHRKRFIRLLERLSRANLTIEPKKCQFLKREAKVLGHIVGNGEIKTDPKKI
FT                 EAARKYPRPTNAKKIKQFLGFVGYYRRFIKGYAKIAQPLSKLLKKGTEFKW
FT                 EEQHEQAFKTLVDALCSEPVLKAPDLEKPFVVTTDASDYAIGAILSQGEIG
FT                 KDNPCEYASRCLKGSEIRYPTYDKELLAIVYAKEQFRPYLFGRRFTVVTDH
FT                 EPLKHFHSSKKPDIRFNRLKAELRGYEFDVVYRPGIANKAPDALSRNPIIE
FT                 DGEKNPELPRRELYELAEEQERDGHGDINAPPARIFKMRTRRERNIIRRDK
FT                 KWQIEISDSDESNKKVERKKPRKTNNSDKLTVNEQSDADSESEWTVASENI
FT                 ESKGAEPRKKQGKRGRPRKQIVQIAEENKGKNIQIGSLNNGEEQILSQGPT
FT                 EDKLAYMCKEENLKKGVGITSTPYLELEIQPKMQRKNRKRQLDTLHRHPPN
FT                 FSVTPQIETVSKEIIIANCDSPVALKGKSEPVKHWGFQLAAASLANEEGKE
FT                 EEKTVGTEIIDINANNDKHGGHQQAQAGLVTELIGKRERMLDPIDTIEMMS
FT                 SDAGMSSRNANKGEKENDRWAQAHAQSVLQESNKQQQKIPNTVEGDRPTPK
FT                 EGAQSRPSSESVSEKQINESRRGTQTKESPEKGTKVNKKIGALLNDSIDNF
FT                 QAKVRLDVKRRDFKGKPGIRIDAWESDTITDRLLSDPTVSTDNDTNISQQP
FT                 SKERTGSGDREKFFSEEDTPRGSPQINENPSGNERIRGVMDDYTDEGNKLE
FT                 SKTGGGNVAKRNLEQNCMESNKNLKLIEELPVEIPGNCLFDSLIFSCDLQL
FT                 TARELRDVLQCSKWKNICVDPEEVEKILQSNTEYGNDDCILLFAQEFRKNI
FT                 CIHLQGTKRGKKCEIFESFTINANEEYVHLHLLNNHFRPLVAATRHSEEEQ
FT                 SPVERESRVSDESGANINWKSEVNESWKEKEEGVKEIERNKSDSMNEDVYE
FT                 DGDTPPPDPPPPPDSSSSSDLLNNESEEGAGLNKARLESESEPEEADLQRK
FT                 VLSNLPQLKKYRVCRTRLPHEKPPWLPGKETDIQPFQRMHRAKDHPFHYLD
FT                 NLVFATVTESVPDTETIDALYERGYIDPIALNNEKKMVGDVMRANVRKVAV
FT                 MRMYIKSHFEDTALKSDIKKCITSLKALVMINKIKSIGVIRDLAILNMSQW
FT                 IYFVEQFEETFKNLKVAATFYMNTLVIPPVDQRYKVIKEYHESTIGGHKGM
FT                 NKTYNKIARDYYWRNMRADVRQFILGCRSCQTKKLVRVKTKQAMLVTDTPS
FT                 RPFEKISIDYYGPINKPSTNGYTHILSIQDWLTKFIVLIPVQRATAEETVR
FT                 ALTNKFLAYFGAPEKLLSDRGTHFMNKTMDEFTRLFKIEKLGSTAFHPQSN
FT                 GAIERMHHVLTEYLKAYISETEKWDELLPLCMLAYNTSEHESTGYTPYELI
FT                 FGQQAKLPSSFKRPEVGQTYTELLLQITGTLAQLRSLAAMTQTQNKYRSKY
FT                 YYDRALNTNFFMEGEMVYVLKEPSKGKFDDQYEGPYEIVGIDYRNHNVKLQ
FT                 RNEEIRVSHVDKIKKACVLKSPCPRDEMIRRGEEEK"
XX
SQ   Sequence 11731 BP; 4350 A; 2136 C; 2692 G; 2550 T; 3 other;
     gttttggtgc taagtgtggg gtaggttttg tcgcgaaata aaaatttttt tttacacgtg        60
     atatttcgga attttcgggc aacaatcggg aagcacacat agtgcagtgc aacaacaggc       120
     gcagaaaatt caaggcagtc acctgcagct gctatcgagt aagaaaggac aagagtcaac       180
     atccagtttc aaaaggaacc atcgtaaaga ggatgacttg gagtatattg gcgctcatcg       240
     tcttgtgcct tctgtcaaag taagtaataa ttctttttat cctcccaaat atatatactt       300
     attgtccctc ggggttgttt agctaaggaa acgacgtaca aaaaataata cttaacccga       360
     atacggctag ttccgctcgt tttagaagcc agtaaaatag aaatacagaa tcggaaataa       420
     aataggaatc cttttttctc tattatttct tcgtgcgtgg actgaaatca actaatataa       480
     ttaagctcac atcactctat tataaaaaaa agggggaaag aaataatgat gtccgactac       540
     ggggaagaga ttgataacgg tagggatggt ttaaacgaaa ctttttccat gacacaggaa       600
     gattcagata caataacggt tatgcttgaa cacgaccccg aatcgtatgc actctatgag       660
     aagatggata agaaaaatca agttcttatg ttaaagatat ttaaaaatat aaaaccaaaa       720
     atttcattta agaaaaatcc taatacaaaa ttagcagagc caacgaatga aacagcagaa       780
     atagagatgt tggaaattgc accagaaaaa tcagaattaa aagagaatgc gattaaggag       840
     aacatagggg tagacaggaa acgtgatcaa ttaggcgtgg aagggctagg caaaacgagt       900
     tggcaggaaa agtataccaa acggcgagaa caagaaaata caaacagtga acaacctttt       960
     ataccattct gcgattggcc acctctgcat tcaaatgaca aaaattataa ctactataca      1020
     tcaaacaata ggacagatag gctgaggttt ggatacgaag aaaatcataa tgacgtgtat      1080
     acaaatacag aatacctttt ccctgcatgt gaccgaccaa ccgagctgcc gataaataat      1140
     caggcagaat cttttcaaag gacacaaagt aacatacgcg ataaccctca gcatcaaacc      1200
     atgcaatttt ttcctagtaa taggcaacaa acaggggtac cgttagcctt aggctcgaat      1260
     cttaatatat taggctacct aaacaacgca gtaaatggta taccactgta taatggagac      1320
     cccgtgcagt ttcccttatt tgagcaaatg gttagaatga taaagggaac aatacctgtc      1380
     cagtatgaaa aatatttcat aggacttttg ggaaataaat tgcgaggcat agcggacgat      1440
     caattctgca cgcgattgtc gttatttaat tcgattgacg agcttctgtc ggctctatcg      1500
     cgaagattca ataaaatagg aggaatagag acacttgcag cggagcttaa gactgtcacg      1560
     caatggaata acgaattaat tatggaatat tgcgggcgag tccagcgact acacaatggg      1620
     atcatgatgg cacatgaggc gaacccatac ttgacgcggg ccgagaaaga cgcgtcgaaa      1680
     aagagatcag acggtgaagc agtgaggcag tttctgtacg gattaaaggc accgtataac      1740
     tggaacgtcg cagggttcca accaaaaacg ctagaggagg ctattgaagc tgccattact      1800
     gtagataatg aattaagcct ccgccgctca atgatagtgc aaaagagcag attgagagca      1860
     aataacgccg agagacggta tgacgccatg gtgggcctta tcggtagcga cgcacccgtg      1920
     gggaagtcag atacggacga gtgggacggt gtggctgatg taaagtactg ttcgtattgt      1980
     cgagagcacg gcgcccattc tactagtgga tgtgaaaaat tgtggcaaga tgcaaaaaaa      2040
     ggaataataa aaaatcctaa cgttgatgaa gaaccaaaaa aagaaacaat agaagaagaa      2100
     ggatggtatg ataggaaggt ggcgtataat gattatcacc gtcggtatgg aaacgatagg      2160
     atttttgatc gacaacaagg gaataatggt aaaaggcctt acaaccaagg gaatcgctac      2220
     cagggaagaa aatataacta cgataataat aattattata acaataataa taacagtaat      2280
     aattatgacg gaaatagtta caatgacaga aaagtaggtc ataattataa tagatatgac      2340
     cacaggaagg acgattatcg ggacaggcga aataaccaat actccaatca ggataatcgc      2400
     agggatgatt ataggagaga taatcttaat agtcaaagtg cgagggtaaa cagctcgaaa      2460
     accgggcatt taaactcgca ggatgttcga cgcgatcccc aatcgtcggg catgacaaag      2520
     caataaatga aggaatttat gagaggaagt taggagtgtt agaggagggt atggataatg      2580
     acaagcataa ggtatcggag acttatgcca cgacgcgtga aaattctaaa gctgaaggaa      2640
     aagatgagca gcagctatct cgcacagtga aaataaattt atcgaaaata ggatacacac      2700
     cacccacagt aattctaaaa agcccttata taaacgaagg tgcgacattt tatgccgata      2760
     cgggcgcgga aatttcaata attaaagaga attgtctcga tattggagta gcggtaaata      2820
     gtagggaaaa attaaaaata aaaggcgtaa cgcacggagc tcgccaaact ttgggatcta      2880
     taagattacc cctagaaaac tttatgtgta ccctacacgt agtcccccat gactttccca      2940
     tagaggtgga aggaatcata ggatgggata tttttaagtt gtataacggt cagataaatg      3000
     ccgaagacaa cacacttaag ttgaatggaa ggagaattcc gctacgagaa tcagaaagtt      3060
     ttgaaattgt gccgaaaacg aggcaagtta tatatgcgta tataaaagag tcgcacagga      3120
     aaattaaagt gggctgggtc ccactacaaa agcttacaga gggtattttg ttcggtaatt      3180
     ttatcgcaac gaacaataat ggtagggtgt atgccgaatg tctaaatata tcaaatgaaa      3240
     taataaatgt accagtccca gtggtggacc tcttagagtg tgagacgacg aagaaagctg      3300
     actcatcgga cgtcaatggg gatgacgtag aagcattaga aagagccttt gtacggatgt      3360
     ttagagaaac tgaaaaccct gaagagaatg aaaaactagg caatgagata agaaacgacg      3420
     ccagctgcac atgtacgaag aaaaatatcg tgggaaacga gggttgtgac aaggatggcc      3480
     gtgacaacga gaatactcaa atacttgagg aaaacattaa aacagacgtc ctaagttgca      3540
     ggaaagcgcg agtagacaaa ataatggagt tagtcgacat atcggggtgc aacgaagaag      3600
     agaaaaaaca tgtgcgaggg cttatagaga ttgacccgta cgtttttgga ctcgacgggg      3660
     aaaaactgaa agcgacaaat cttttaaaac ataaaataaa cacgactacg gataaaccga      3720
     tagtaacgaa gcggtataga tatccgccag ctgtgagaga gcaaatgaaa gttgaaatta      3780
     agaaattact cgaacaaggc ataatagagc cttcagagtc accgtacagc tcaaacatgt      3840
     ggatcgtacc taaaaacgca ggaccagatg gcgaaaagcg ctggcgggta gtaacggatt      3900
     tcaggcaact caacgagata acaatgggca gttgtcatcc acttcccttc cagagcgata      3960
     tactggaaca tctggcgaca gcacgctata ttacagtggt agacttgaag cagggatttt      4020
     ttcaagtcga aatacatgaa gacgatgctc ataaaacagc gttttcggga ccggatgggc      4080
     attaccagta caaaagaatg ccaatgggtt gcacggattc tccgaacacg tttctaaggg      4140
     caataacgct tgcactggca gggctgcagg gccatgaggt agaggtatat ttagacgata      4200
     taatggtgtt cgcgtcgaat cttaaagaac atcgcaaacg ctttataaga ttgttagagc      4260
     gattgtcaag ggcaaatctt acaattgagc caaagaagtg ccaattctta aaacgtgaag      4320
     caaaagtgtt aggccatatt gtaggaaatg gtgaaataaa aacggatcca aagaaaatcg      4380
     aggctgcaag aaaatatcca aggcctacaa atgcaaagaa aatcaaacaa tttcttggat      4440
     ttgttggata ttataggaga tttattaaag gatacgctaa aattgctcaa ccgctgtcga      4500
     agcttctgaa aaaaggtaca gagtttaaat gggaagagca gcatgaacaa gcattcaaaa      4560
     cgctcgtaga tgcactttgc agtgagcctg tacttaaagc acccgatcta gaaaaaccat      4620
     ttgtggtgac aacggatgca tctgactatg ccattggggc aatattgagt cagggagaaa      4680
     taggaaaaga caatccgtgc gagtatgcct ctagatgcct aaagggcagc gaaattcgat      4740
     accctacgta cgataaagaa ttgctcgcta tagtatatgc aaaagagcag tttcgaccct      4800
     atctatttgg cagaaggttt acagtggtta cggaccatga gcctcttaaa cattttcact      4860
     catcaaagaa gccagatata agatttaata ggcttaaagc tgaattaagg ggctatgaat      4920
     ttgacgttgt ttatagacca ggaatagcca ataaggcacc ggatgcactg tcccgaaatc      4980
     cgattataga ggatggagag aaaaatcctg aactaccgcg acgagagtta tatgaacttg      5040
     ctgaagagca ggagagagat ggtcatggtg acataaatgc gccacccgca cgaatattca      5100
     aaatgcggac aagaagagag agaaacataa taagaaggga taagaaatgg cagatagaaa      5160
     tatccgattc agacgagtcg aacaaaaagg tagaaaggaa aaagcctcgc aagacgaata      5220
     actcagataa gctaacggtc aatgaacaaa gcgacgcaga ctcagaatca gagtggacgg      5280
     tggcgagtga aaatatagag agtaaaggag cagaaccacg taagaaacaa gggaaaagag      5340
     gcaggccgcg taaacagata gtacagatcg cagaagagaa taaggggaaa aatattcaaa      5400
     taggatcctt aaacaatggt gaagaacaaa tcctatcaca gggtccgact gaggataaat      5460
     tagcttacat gtgcaaagaa gaaaatttga aaaaaggggt gggaataaca agcacaccgt      5520
     atttagaact agaaatacaa ccgaagatgc aacgaaaaaa tcgcaaaaga caattggata      5580
     cgctgcatag gcacccgcca aatttttcag taacaccgca aatagaaact gtgtcgaagg      5640
     agattatcat agcaaactgt gactcaccgg tggccttaaa aggaaaatcc gagccggtaa      5700
     aacattgggg attccaacta gccgcagcta gcctagcgaa tgaggaaggt aaagaggaag      5760
     aaaaaactgt aggtacagag atcatagaca taaatgcgaa taatgataag cacgggggac      5820
     accagcaggc acaggcaggc ctggttacag agttgatcgg aaagagagaa agaatgcttg      5880
     accctataga taccatagag atgatgagtt cggatgcagg tatgtcaagc agaaatgcga      5940
     ataaaggaga gaaggagaat gaccgatggg cccaagctca cgcgcaaagt gtgctccaag      6000
     agagtaacaa gcagcaacag aaaataccga atacggtcga aggggaccga ccgacgccga      6060
     aggaaggggc acaaagcaga ccgtctagtg agagtgtaag cgagaagcaa ataaatgaat      6120
     cacgacgggg tacacagacg aaagaaagtc cagaaaaagg gacgaaagta aacaaaaaga      6180
     tcggagcgtt acttaatgac tcaatagata acttccaagc gaaagttaga ctagatgtta      6240
     agcgccgaga ctttaaaggc aagccgggaa tcagaataga cgcttgggaa tccgatacta      6300
     tcaccgatcg acttctgagc gatccgacgg taagtacaga taatgataca aacatatctc      6360
     aacagccctc gaaggagaga acgggctcag gggatagaga gaaattcttt agcgaggaag      6420
     ataccccgcg tggatcacca cagataaatg aaaacccatc ggggaatgaa agaataagag      6480
     gggtaatgga cgattatacc gatgaaggta ataagcttga aagtaaaaca ggaggcggaa      6540
     atgtagccaa acggaattta gaacaaaact gcatggagtc gaataaaaat ttaaaactta      6600
     tcgaagaact tccggtagaa ataccaggta attgcttatt cgactctctt attttttcct      6660
     gtgacttgca attgacggcg cgagaactcc gggatgtact acaatgttcg aagtggaaaa      6720
     atatatgtgt tgacccggag gaggtagaaa aaatcctgca gtccaataca gaatatggta      6780
     atgatgattg catattgttg ttcgcacaag agttcaggaa gaatatttgt atacatctac      6840
     agggcactaa gaggggaaaa aagtgtgaaa ttttcgaaag tttcacgatt aatgccaatg      6900
     aggaatatgt acacttgcat ctcctcaaca accacttcag accactcgtt gccgcaacca      6960
     ggcatagcga ggaggaacaa agcccggtgg aaagggaatc gcgggttagt gacgaatcgg      7020
     gcgccaatat aaattggaaa agtgaagtaa acgaatcatg gaaagaaaaa gaggaaggag      7080
     ttaaagaaat agagcgtaat aaaagtgact ccatgaatga ggacgtttat gaagatgggg      7140
     acacgccccc acctgatcca ccaccacccc ccgactcttc aagtagttca gacttactaa      7200
     acaatgagag tgaagagggg gctggtttaa acaaggccag actggagtcg gaaagcgaac      7260
     cagaggaagc agaccttcaa agaaaagtat tatcaaacct cccacagcta aaaaagtaca      7320
     gagtatgcag gacacggtta ccacatgaaa aaccaccgtg gctaccggga aaagaaacag      7380
     acatacaacc attccaaaga atgcatcggg caaaggatca cccatttcat tatctagata      7440
     acctagtatt cgcgacggta acagaaagcg tgcctgatac ggaaacaata gacgccctat      7500
     atgagcgcgg atacatagat ccaatagccc taaataatga aaaaaagatg gttggtgacg      7560
     tcatgagagc aaatgtgaga aaagtcgcgg taatgcgaat gtatattaaa tcgcattttg      7620
     aagatacggc gctaaaatcg gacatcaaga aatgcattac gtcactcaag gcactagtaa      7680
     tgataaataa aataaagtct ataggcgtga tacgtgactt ggcaatactc aacatgagcc      7740
     aatggatcta cttcgtggaa caatttgagg aaactttcaa aaacctcaag gtcgcagcga      7800
     ccttttacat gaacacctta gttataccac cagtggatca aagatataag gttattaagg      7860
     agtatcacga atcaacaatt gggggtcata aaggaatgaa taaaacctac aataagatag      7920
     caagggacta ttattggagg aacatgaggg ccgatgtaag gcaatttata cttggatgca      7980
     ggtcatgtca gactaaaaaa ctagtgcgtg taaaaacgaa gcaagctatg ctcgttacag      8040
     atacgcccag cagaccgttt gaaaaaatct cgattgacta ttacggacca attaataagc      8100
     cttcaacaaa cggctataca catatcctgt caatacagga ttggctaacc aagtttattg      8160
     tattaatacc ggtacaaaga gcaacagctg aagaaacggt aagagcctta acgaataaat      8220
     ttttagcata ctttggagcg ccagaaaaat tattatcaga ccgaggaacg cattttatga      8280
     acaaaacgat ggacgagttt acgcgattat tcaaaattga aaaacttggg agcacggcat      8340
     ttcatcctca gagcaacggg gcaattgaac gcatgcacca cgttcttaca gaatacttaa      8400
     aagcctacat tagcgagacc gaaaaatggg acgaactatt gccgttgtgt atgctcgctt      8460
     acaatacgtc ggaacacgag agtacaggct acacacccta cgagcttata tttggtcaac      8520
     aggcaaaact cccgtcaagc ttcaagaggc cagaggtggg tcaaacatat acagagttac      8580
     tgctgcaaat aacggggaca ctcgcgcaat tacgatcatt ggcagcaatg acccaaacac      8640
     agaacaaata cagatcaaag tactattatg atagggcgct gaacacgaat ttttttatgg      8700
     aaggtgagat ggtgtatgta ctaaaagagc catctaaagg gaaatttgat gaccaatacg      8760
     agggccctta cgaaatagtc ggcatagatt acaggaacca taatgtgaag ttacagagaa      8820
     atgaagaaat acgggtctca catgtggaca aaataaaaaa agcttgtgta ttgaaatctc      8880
     cgtgtccgag agatgagatg ataagaagag gagaagaaga aaagtgaaag ggaccaagcg      8940
     gcaacttgct ccccacccca atagttactt acgaataata gcattataga cgaatagggg      9000
     gtagaaatag atgtgaaaat aaataccact tctctcggga actctttttc tttcgcggcc      9060
     cccggacgcg ccgcgaagat tcattaaata caggcatacg ggaggagaca tgtaacgaaa      9120
     ggaaatatat tacgttcaaa attagcacag actgaggaat taaggagaag agagaaacat      9180
     gcaatataaa aataataata acaatcataa taatgagagg aaatgaataa ataacgtgta      9240
     taataaagtg atattctatt tttattttct ttgttactct ttacatgaac gatgtatgag      9300
     aggtgggtaa aaagtgcgtg tggctctatc taactagcgt taaaaccatg tcaatacaat      9360
     tatcacataa gtgtacactt aggagacata tgcagaatat aggcatatat atgtataaaa      9420
     aaaaaaaaac ctttttgagt tacatatttg tacggccggg aggagcatgg aggaacggta      9480
     aatagaaata atgaggggta accgcaaaaa aaaattttta tcacactttt atcgtgggcc      9540
     acgagttcgc gaactaggac agatcttcct cttccctctt cctccctcct tcttccgccc      9600
     gccgtcaggg actatcctgc ccccgccatg gtcactcccg gataataaca tcgcctgtaa      9660
     acggcgcacg cagtcgtcat gagacaacac tggatcggcg gtcacgtcct tggcgacgaa      9720
     cagaccgtcc actggaccgt ccacctaagg taatcttttc tttacaaaag catataactg      9780
     gcaactatga cgagaagtaa atcaactgat agcgcacctg gattatcggt cagctgtcga      9840
     gaggatagga agcagcgtcg aactgcacgt cgactaccac caccatgaag gcccggtggc      9900
     aagtacaccc gataacaata gtataagtcg ccccggactc aagacttcga cagtatttct      9960
     tcagcacgcg gccgtcgaat gacgtgcacg ccaccgcttc ctcgtggtcc tggaaaacaa     10020
     ggagaaacgg tacccctaag gggcaccgaa cctcacaggt tccaacacct ccacaatatg     10080
     ggtaccgccg caagggcaaa ggggccacgt tgtgagacca cccttgctca cacagaggcc     10140
     tcggtacgcc gaaataagcg tacggatcaa caacgagccg tgtacccaac taaaacaaat     10200
     tttttcttaa acttcagaaa ctcgggcaac cgcacgaaaa tatcaaaaat cgcacttgca     10260
     ccagtcatag taaaattttt tttgcgttgt gtggaaacaa caaggaagag taccggacaa     10320
     aatcagcgag tacacagccg ggagagcagc aatgagaaaa ggaaaaccca acagaatccc     10380
     tttgacattc cctccttgaa ttctgtcaca tgaaaaaagg aaaagaaaga aaaaaaaaaa     10440
     aaaaaaaaaa aagggacgaa aggagataag gtataaktaa ggggaaatga gtgaagtatg     10500
     gtcccgacgt gacatactgc tcactacgga aaggcgtgat cataaaatca tctactcctc     10560
     caagctcatc ccaaccaaaa tagggacaaa ctgtaataca acgcggtacc ttccaaaggt     10620
     acaataaacg aatacataca caaatgtcac gagaatcggc gaaaacaacg ctgtaaacat     10680
     acagacacgc atgtacttaa cacgcgacgt gggaaaaaaa acagagtttt gagcaaaaaa     10740
     aaagaaattc ctaaggagta agactattat gtaccttatg tttatagcat acacatacac     10800
     agtgtaacaa atatagatgt acataagtat aacattaata ttatatgcaa cgatataccc     10860
     tgaatgtaaa gacggagcca cactcgctac ttaccgtaat aaccagtcaa gccctaatac     10920
     tagattgcat ttaatgatta ttaggaaaat atgtgtaatg aattgtatgg catgggcatt     10980
     tgtatttaca cagaacgtta aaacaaaata aaaatagaaa tgaaaataaa ataagaagga     11040
     aggtagaatt tttctctctc tctcgtagtt gttctctctt tccttaatca agggtaacct     11100
     agggacctag gagcttacga taaatgggag tgagaacggg gaaaaaagga taactatttc     11160
     atgttttagg ggtgaaatag cgttgggggc ggctgcagga tcggtcggwa ttttaaaatg     11220
     gggggcccca cttatactaa atttatmtag aatgtttgca ggaagaagaa ccagaaacaa     11280
     tgtcgcaaga aatgaaaatc cggggaattc tatggcacta cagccaatac ttatccaagt     11340
     acggggtgag cggcgacaag aagatcaacc gacgggcagt aacaaacagt taccataaga     11400
     aacaaacaaa ctttagctaa gttaaaggta gagccttaat acctaagcat tgacgatgtc     11460
     tagtaaaaaa aaaaaaaaaa aaaaatccat aggtaaaaaa aatataagta aataaataaa     11520
     aaagaaaata gtaagtagac acgtaaataa gaacggttga tatacctttt ggttcaataa     11580
     tgcgttaaat ggataaaaaa aagaatacgt atgtaataat gatgataata aaataaaaaa     11640
     aataaaaaga tttttgtcat gttgtgtgga agacgctgcg tgaaatgtaa tgaatatagt     11700
     ataacacaaa aaaaaggaaa taaaaaaaaa a                                    11731
//
ID   Gypsy-6_CoFl-LTR repbase;    DNA;    INV; 729 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 24.11, Created)
DT   23-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-729
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2300-2300 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 729 BP; 298 A; 120 C; 153 G; 158 T; 0 other;
     tgaatacaca aaacaaaagt tgtaagtaaa ataaaaccga aagaaggaaa acaataatca        60
     taatgaggaa aatgaatatg tatgaaacaa ctcagaaaaa aaaaatgtaa gtacataagt       120
     aaatattaaa ttagataata agcaataaat ggtaattgaa taatcatcaa tgaaagtaag       180
     acccacaagg gcatatttat caatttatta tgtaagaggg aagagcgcaa acacgaacaa       240
     tatgtgtaat aacacaatta taaacttgcg gaaaactaat caaagcctgt aaaagaaaaa       300
     ttaacgagga tgttcatagg aacacctcat taatttttct tatatgatta gtatacatta       360
     caacacgaac aacatgatac agacactaat taaacaatca ttcccgaggt ggtacagaaa       420
     agaacgttgt cgagggcgaa aacgaagcgg cctcggacgt gtcacgtaca gtatggaaca       480
     tactacgtgg ggtgggcctc agctattagt attaggaagg agcacaagtg ggggaagaga       540
     gagcataaaa aggcccgcag cagtggccac agggctcttg aacgtcggga ctagaaggag       600
     gatagtcgca ataagtaact cgggaccgca aagcgccttc cctcaaggaa tatagcaata       660
     aagagattga ttgagtttaa ctgccgcgtt gttattaagc accccgaacc tttagaatcc       720
     tacgtaaca                                                               729
//
ID   Gypsy-6_CQ-I repbase;    DNA;    INV; 3908 BP.
XX
AC   AAWU01000668;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_CQ_;
KW   Gypsy-6_CQ-LTR; Gypsy-6_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3908
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 391-391 (2011).
XX
DR   GenBank; AAWU01000668; Positions   34623   30716.
XX
CC   'CACT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           447..2132
FT                 /product="Gypsy-6_CQ-I_1p"
FT                 /translation="MVFDLKEAVICIPKFDGSHDHLHNFIAFIDLFAQGNE
FT                 NNVNVNWEHQLLVVVRMKFHGKALDKADNIIKETWNETKLALKNAFEEKIS
FT                 IEQIIMQVYSLKQLYHESFEDYKERADKIHASIKKLGNNVYANRQLKSNFI
FT                 SGLRDYNVMKLAANIQADDYEDLVAELVKKCRYIEAINTSSSMKQNYTNNN
FT                 YDDAIRYHSDDFNDECTSFNKRHYNYSSNSNSNSRSYYHGRKNNKFQNFEN
FT                 RPHWQDRNQSQNFNDSNFNNQTNGSDWFDNRNTNFSQQQMDNQNNLLNYSD
FT                 NCSVFVTEESELVHSFEDFNQNYESKNVIDISNSNYDEHIELAENSENLSI
FT                 VLTTAAWKGDNLFEENTAVEPTTHSEIEVQVLNVNEELDQLTHINEINDDV
FT                 ATTSDHLKEEYNKSDDKEIIYDLTKIYAETNDLNMIIPQWIFNQKTSEEIQ
FT                 NGVHQEQVVVSEFDPIKDTAYESQFYPKDANEIIESDIAWVETTNPIALEQ
FT                 VRTFNKIKQYHTDKFNSRSISSLSYGDRKENSNSIEEIKPLSLNCQNVLQS
FT                 SQKLEDFKRFRMKGS"
XX
SQ   Sequence 3908 BP; 1463 A; 596 C; 703 G; 1146 T; 0 other;
     tctggtgaca gcggaaacta accgctagga aaaaggaaaa cgccatttct gactgaccta        60
     agtaataatt gttacagcaa tcgattttga ttagaagata caaggaagca aaaatatgtg       120
     ggcctactac tcgtgaatcc tagaactacg cataactgag tgttgtttgt gcccgatttt       180
     gtgtgttgct gttttgacga attctatcat cattgcccgc cctatctgcg acagccacca       240
     cgagaggatg atcatcattc tattaataac atggtaagta ctttttagtt ttatgttctg       300
     atttttgtga aaaaagtaat agtgtttgat gatttgatgg agaagtcagt acttcaaagc       360
     tgtttcgttg agtaaaagtg tttaagtata atcttcattg ttatgcatca cttataaatt       420
     tcaattttaa attttaaaat aacaaaatgg tgtttgatct gaaagaggca gtaatttgca       480
     ttccaaaatt tgatggatct catgaccatc tacataattt tattgcattt atagaccttt       540
     ttgcacaagg caatgaaaat aatgtcaacg ttaattggga acatcaacta cttgtagtag       600
     ttcgcatgaa gtttcatggg aaagcgctag ataaagctga caatataatt aaagaaactt       660
     ggaatgaaac caaactagct ttgaaaaatg cctttgaaga aaaaataagt attgagcaga       720
     ttatcatgca agtttatagt ttaaagcaat tgtatcatga atcatttgaa gattataaag       780
     agagggctga caaaattcat gcttctatta aaaagcttgg taataacgtc tatgcaaata       840
     gacaacttaa atcaaatttt atctcaggtt tgagagatta caatgttatg aaacttgcag       900
     caaatattca agctgatgat tatgaagacc tagttgcaga attagtcaaa aagtgcagat       960
     atattgaagc aattaatacc agttcatcaa tgaaacaaaa ttatacaaat aacaattacg      1020
     atgatgcaat tcgttatcac tcagatgatt ttaacgatga atgtacatca tttaacaaac      1080
     gccattataa ctatagctct aattcaaact caaacagtag atcatattat catgggagga      1140
     aaaacaacaa atttcaaaat tttgaaaatc gcccacactg gcaagacaga aaccagtctc      1200
     aaaattttaa tgatagcaat tttaataacc agactaatgg ttcagactgg tttgataaca      1260
     gaaatactaa tttcagtcaa caacaaatgg acaatcagaa taatttacta aattattcag      1320
     ataattgttc agtttttgta acagaagagt cagaactagt gcatagtttt gaagatttta      1380
     atcaaaacta tgagtctaaa aatgtaatag atatttcaaa ttcaaattac gatgagcaca      1440
     tcgaacttgc tgaaaatagt gaaaatttga gtattgtgtt aactactgcg gcatggaaag      1500
     gtgacaattt atttgaagag aatactgcgg ttgaaccaac tacacacagt gaaatcgaag      1560
     ttcaagtttt gaatgttaat gaagaattag atcagttgac ccatataaat gaaataaatg      1620
     atgatgttgc aactacgtct gatcatttaa aagaagaata taataaatca gatgacaaag      1680
     aaattattta tgatttaaca aagatttatg ctgagactaa cgatttaaac atgattattc      1740
     ctcaatggat atttaatcag aaaacgtctg aggaaattca aaatggagtt catcaagaac      1800
     aagttgttgt atcggaattt gatcctataa aagataccgc ttatgaaagt caattttatc      1860
     caaaagatgc caatgagatc atagaaagtg atattgcatg ggtcgaaaca acgaacccga      1920
     ttgccttgga acaagtcaga acgtttaata aaataaaaca atatcataca gataaattca      1980
     actctcggtc gatatcatct ttgagttatg gtgatagaaa agagaactca aattcaattg      2040
     aagaaattaa acctttaagt ttaaattgtc aaaatgtatt gcaatcctca caaaagcttg      2100
     aagatttcaa aagatttcgt atgaaaggaa gctaaatatg ttttgataat ttggactgga      2160
     cacattatcg aaaaatgtcg aatgaaaatt aaaatgaaaa ggatatttta ttttaaaatg      2220
     aagtgattga ttaaacataa tggtcgctca agcgcagtgc tctttataac ttaattcatg      2280
     agtgtggact cttattatca cgttcacaat atggatttta aaaattaatc tgtattgtgg      2340
     taactcaccc acataatgaa atatgccttt aaagatttgc ctatcgatgg tttcatcatt      2400
     aggtttaatc ctttactaaa aaaaaggtta gcaaaatgct cttcaaagta tatttttact      2460
     tgatgacaca cacgctaaca atgtgtacgc tgtcaatgaa aacgattacg atgtaaattc      2520
     gtttagtact ttttagaaga gtttgagttt tatcatgtta aaaaaataat aataatataa      2580
     aaaaaacatt gcattttata ctaatatgct tgcatgcgag attttcgctt tgcttgagac      2640
     ttttcttttc agcacaccta ctaccaactt ttcggggtca tagggggaat gatcggtcgg      2700
     atcatttaag taagtatata aattgaatga tggcagttaa tgtctcggac tattttatgc      2760
     accaaaattt aaaatcattc aatttaaacc tggttttttt atgcatgaat gatgaatgca      2820
     agagaagtct gtgggaagag cgataaataa aatgattgaa aaaataatat aaatatggct      2880
     tgaaaataac caatcatttt gtttataaaa tattaaaaaa aaaaaaaaga ttgagattcg      2940
     atcaacatta aatgccgcct agcaaataaa atatggggct tagctaattc gtagagataa      3000
     tcattatatt taaaaaaaac ttctgcaaat taaaaaaaat gcagcttagc aattcaaaga      3060
     ataaaaacaa aaaaaaaaac ttagggttta gaattttgag ccagtcctca gagagcggaa      3120
     tccactctgc tagggagcag aggtaacttc aaacttcaac atccgcaatc aacgacgctg      3180
     gggtcttcaa gataggacaa cgaagggtcc ttggcgttac tccagatgat gaaaattggt      3240
     gatcttcaat gttactcaat gttgtatggt gttacgcttg atgttgacga agctgatggt      3300
     ctaaactgtg gcaaggagaa tggcaagatg agagatcgat ggaatctcgt tggaaagaca      3360
     agaatatacg gtatcaacat acggcgactg ggagatgatg ctcctagatt gcgccttatt      3420
     cattaataac cggagtgttg ttagcggcta agcaatgaac ttagactgca tttattttgg      3480
     caatggttgc ctgatccaga tctaatgaac taatggaagt tcaatcatac cgtatcaagc      3540
     caacgagata cgaaaagttt aacaagagat ggcctcaaca acagattgaa cacttaacag      3600
     cgaaaagtca acggttggaa caacagagtc aatatcgtca acacagccca gacgtacatc      3660
     atcgaagcag ccaggacaac cgtgattatc ccagaagaca ccccagagtc atatcgcgag      3720
     acagaagaca tccccgaaga caccccagag tcataacgcg agacggaaga catccaagaa      3780
     gacatccctg aggtagcaag gaccaacgta aagttaggaa aaattataat attttaccaa      3840
     aaacttacaa ctatctactt gaaatcaatc tcttcaggat taatttcaag ctgttaagga      3900
     aggggaga                                                               3908
//
ID   Gypsy-6_CQ-LTR repbase;    DNA;    INV; 508 BP.
XX
AC   AAWU01000668;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_CQ_;
KW   Gypsy-6_CQ-I; Gypsy-6_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-508
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 392-392 (2011).
XX
DR   GenBank; AAWU01000668; Positions   30715   30208.
XX
SQ   Sequence 508 BP; 123 A; 105 C; 117 G; 163 T; 0 other;
     tgtagcgacc ctaagtcgcc tacctactat acatagacta cagttattgt ttgtcatgaa        60
     caatgtcaag ttcacgacaa cggtaaatgg tctagcacac gcggtgtgtt atacaaaaca       120
     ttcaggtagc ggtaacgctt gacacctcat gttttgtata acatttttcg accacgacct       180
     agggcactgg tagatcaccg ttcagtgatc ttagtattta acggcctgag cttgttcagt       240
     cgcgtgcgtc ttgtgttgtt cattcaagag gctgtaagtc gggggcctct tttggtattg       300
     tgcagtcatt agtcagtgtt ccttatgctt gtgctctgtt gttagttgtg cagccaatag       360
     tcttgggctt gggtttgtgc ttgtgcttgt gtcagtcagt actcatgtca atgtaataaa       420
     taaaagcagt taaaatcaaa gtgcaagtgt tatcttaagc cagtgcataa tatcacagtt       480
     atcccgctcg gacactcggt ccgataca                                          508
//
ID   Gypsy-6_DAn-I repbase;    DNA;    INV; 4778 BP.
XX
AC   AAPP01018403;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DAn_;
KW   Gypsy-6_DAn-LTR; Gypsy-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4778
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018403; Positions   11228    6451.
XX
CC   'TCAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2337..4124
FT                 /product="Gypsy-6_DAn-I_1p"
FT                 /translation="MKIILEDDIPVCQRPRRTSYENRCVIEAQIQKWLEEG
FT                 IIVPSYSEYASPVVLVSKKGGSKRLCCDYRKLNLKIKKDNFPMALIDDVLE
FT                 RLQGSKVFTTLDMMNGFFHVPVEADSRKFTAFVTHNGQYEFTFVPFGISNS
FT                 PAVFCHYISAVLRELIQAKTIVVYMDDIIVPTKTEAAGVEALEKVLEVASK
FT                 AGLRIKWEKAQILQSSITFLGYKIENGTIAPTGEKIKAVVNFPAPKNRQSL
FT                 QRYLGLTSYMRRFIKDYSLAAKPLTDLLRKKSDKPREEIELNDQGLLAFSL
FT                 LKNDLVSAPVLKFFDPSADTEVHTDASKYGFGAALMQKDSEDQQFHPVEYM
FT                 SRKTNACEEKYSAYELEVLAVVNALRKWRVYLLDKKFKVVTDCSAFSMTVK
FT                 KEKIPPRIERWIMALQEFKFTVEPRAGTKMRHVDALSRLSCFLIEDSTKSR
FT                 IIEAQDNDKWIKAVKTILEGGNEYEDYFLNNDILYKDTVKELLVVPDSMQD
FT                 EIISMAHRYGHFGYKKTRDMLERFYFIPEIQKNVERIVKGCVECLIVDSKR
FT                 GKKEGLLSPIDKAQEPLGTYHIDHVGPLTDTKKKYNHSNSATSNSGRIF"
XX
SQ   Sequence 4778 BP; 1766 A; 800 C; 1108 G; 1104 T; 0 other;
     aattatttgg gggctcgtcc gggaattcgt tacaaaaaaa aaaaagatca gtgcgctaac        60
     acagaataat aatcgcggaa agtagacgat gcaatgaaag tacaatcaaa agcagaagaa       120
     aacgtgaaag tggaaaagat ttttgactcg ataaacaata taagtgcaac gaaggtgatc       180
     accggtgcat gaaaactaca catacacacg aacatcaatt tatgtgtgtg taagcttgtg       240
     aaccgccatc ttggaaattg cgcagcgtgg aagcggcact tacgaggaaa aacgagagtg       300
     gccgccgacg acgacgacga ggaaaggcgc atattccgcg acgaaaattc gacgaaaaag       360
     cagaaacgaa gttcggcgac gagaagaagg aagaagctgc aaacgaaaat tcgacgaaaa       420
     agcagaaacg aagttcggtt ccgagaagaa gaaagaagct gcaaacgaaa atacgacgaa       480
     aaagcagaaa cgaagttcgg ttccgagaaa aaaagaagaa gccgcaaacg aattggacga       540
     cgagaagaat gaagaagctg caaacgacga gacgacgaga agaaaaacag aaccatcaac       600
     gagtgcaacg cggggtacac acacgggaaa ggaactccaa gaatcaatcc aacggcgagc       660
     aacaaagagc tcggtgacca catttactcc aaagaaacga cagacatcga cgaagtcagc       720
     caaatccaat tggcttgggt gagcgagaga aaatccagaa actcaatcaa tacattcatt       780
     tttttttggt caacgctaat tttaagaaaa gaaattttgt aaaacattgt gcttttgtaa       840
     aattcgtaat cataagaatt ttgtgaacga cttaaacgca ttacgatgga tgctgtggaa       900
     attttaagaa tgactgtgca aaacttaaga gcaaaactct gaactgaact tataaacgac       960
     agggttaaag atagcattgc aagatcggtt gtttgagcat tttggacttg aagcaatgaa      1020
     taacgtggaa gaacgaagta acgaagatgc agagagcgta aactcgtcgg cataccaaga      1080
     agcaccgtag atgtttagtt caaggtttac tttaagagat gtgcaggaca gtgtttcgtc      1140
     gttttcaggg tcggaacaag aagacgtaaa tcattgggtg tctgagtttg aggacgttgc      1200
     atttactgtt ggctgggatg agctacaaaa atttatatac gcgaaacagc tcttagctgg      1260
     ggctgctaag ctttacatta agagtcagac gggtgttaga ggttgggtta aacttaaaga      1320
     ggtgctacaa gatgagttcg gcaaaaggtt gtgcgctgcc gaaattcata agattctaaa      1380
     gcaaagacag aagcaggcaa gagaaacatg tatcgaatac ctttacagct taatggagat      1440
     aggcaagccg attaaactca atgaggagag tttaatatcc tattttgtag atggaatacc      1500
     cgatgggaga atgaacaagg ctggattata tcgggcaaaa ccgattaagg agcttaaata      1560
     tgagatcaca gtatatgaga agataagaaa taagacgact attattatat tataattata      1620
     aagaaagtaa acagactcaa gggaaagact caaattctca gaaaaagtgt ttcaagtgta      1680
     acaaagaagg ccatattgcc aaggactgca agggggaagt agtgtgctat aactgcaata      1740
     aaaggggtca catatcgaaa aactgtgaac agaaaatgcc aaatatttcc attaagaatg      1800
     aaccggctaa tatgctaaga gttagaagat cagaaggatt aacctacaag aaagtaacag      1860
     cggcaggagt agttttcacg gccatgattg actcgggatg cgatttatgc ttaataagag      1920
     aagacatttt taaaactctc gacggtttaa gcataaagcc agaagtgaga tatctcaagg      1980
     gtatcggtaa gggcgagtta cggacgatag gatctttcga aaccaattta gaggcagatg      2040
     gagtttgctt ccctgtaact tttcacattg taaagcacaa tgattttgat tatccagcaa      2100
     tcgtgggaaa tgacgtttta gaaacagtgg atctgatgtt tagttcaaac ggcgtaatat      2160
     ttaaagagaa ggaaaatgaa tttgtattca aagggttgtg tgcaacggaa attattgaaa      2220
     aggagacagt agtagataaa gtcaaactat cgcatctgaa gaacgatgtg aaagataggg      2280
     tggagatgat gataaattaa tacaagccct gtaaatcaat caaatctccc gttagtatga      2340
     aaattattct agaagacgac attccggttt gccaacgccc acgacgcact tcgtatgaga      2400
     acagatgcgt gattgaggct caaatacaga aatggctaga ggaaggaatt attgtgccaa      2460
     gttactctga gtacgcatca ccagtggtac ttgtttcaaa aaagggcggt tcgaaaagac      2520
     tttgctgtga ctaccgtaag cttaatctga agatcaagaa agataatttt ccgatggcat      2580
     tgatagacga cgttctcgaa agactgcagg gttcaaaagt atttacaact cttgacatga      2640
     tgaacggatt ctttcacgtt ccagtagagg ctgactctag gaaattcaca gcattcgtga      2700
     cgcacaatgg acaatacgaa tttacctttg taccgtttgg aatatccaac tcgccagcag      2760
     ttttttgtca ctatatatct gctgtgttaa gggagcttat ccaagctaaa acaatagtgg      2820
     tctacatgga cgacatcatt gttcctacga agactgaagc tgcaggagtt gaggcactag      2880
     agaaggtttt agaagttgca tccaaggcag gactacgaat aaaatgggaa aaggcacaga      2940
     tcctacaaag tagcataacc ttcctgggat ataagataga aaacgggaca atagcgccga      3000
     cgggcgaaaa aataaaagca gttgttaatt ttccagcccc aaaaaatagg caatctttac      3060
     agaggtattt aggactgact tcatacatgc gacgctttat caaggactac tcattggcag      3120
     ccaagccact gacagacttg ctaaggaaga aaagcgacaa acctagagaa gaaatagagc      3180
     tgaatgacca aggattatta gcttttagtt tgctaaaaaa tgatttagtc tcagcacccg      3240
     tgctgaaatt cttcgatccg tcagcagata ctgaagttca tacagacgca agcaaatatg      3300
     gtttcggcgc cgcgttgatg caaaaagact cagaagatca gcagttccac ccagtagagt      3360
     atatgagtcg caaaacgaat gcttgcgaag agaaatatag tgcatacgag ttagaagttt      3420
     tagccgtagt gaatgctctt aggaaatgga gggtatactt gctagataaa aagttcaaag      3480
     tagtgacaga ttgcagtgct ttttcgatga cagtaaaaaa agagaaaata ccacccagga      3540
     ttgaaaggtg gattatggcc ttacaagaat ttaaatttac cgtagaaccg agagctggta      3600
     ctaaaatgcg acatgttgat gctcttagcc gcctttcgtg ctttttaatt gaagattcaa      3660
     caaaatctag aataattgaa gcacaggata atgacaagtg gatcaaggca gtaaaaacta      3720
     ttctggaagg tgggaatgag tatgaagact atttccttaa taatgacata ctatacaagg      3780
     atacagtgaa ggaattgtta gtggtacccg attcaatgca ggacgaaata atcagtatgg      3840
     cacatagata tggacatttc ggatataaaa aaacgcgaga catgctagaa aggttttact      3900
     tcataccaga gatacagaaa aatgtcgaaa gaattgttaa aggttgcgta gaatgcctaa      3960
     tagttgattc aaaaagaggg aaaaaagaag gtttactatc accaatcgat aaagctcagg      4020
     aacctctggg aacatatcac attgatcatg ttggaccgtt aacggacacg aagaaaaaat      4080
     acaatcatag caatagtgcc actagcaata gtggacggat tttctaaatt aacttggctt      4140
     tacccgacga agtcgactgg aacagacgaa gtagtaaaca aaattgagaa acaggcagca      4200
     atttttggta atcatcgtag aattgttaca gacagaggta cagcgtttac atcaggaacg      4260
     tttcaggagt actgtagccg cgaaggcatt caattgcttc acataaccac agggatgccc      4320
     agagagtaga gcgaattcat aaaatcgtta taccaatgct aagcaagttg tgtcaagaca      4380
     atccagggaa ttggtatcgc catgtagata gagttcagca aatagtaaat aactcgccac      4440
     ctcgaactac aagattcagc ccatttcaaa tacaattgca acaaaatatt gaaaagattc      4500
     agcaagaaaa cagaaaatat ttcaatgaga aaagaaggga agagtcgaat tataaagtag      4560
     gcgagttagt agctataaaa aggacacaat acggaacagg catgaagctt aggccaaagt      4620
     ttttcggccc atataaaatt acaaaaaaac taaatcacgg tcgatatgaa gtcataaaag      4680
     agggaaatca cgaaggacca aagaaaacaa caacatcggc agagtatatg aagaaatgga      4740
     gttcattcgg ggtcgaatga aaaatcagga tggccgaa                              4778
//
ID   Gypsy-6_DAn-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   AAPP01018403;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DAn_;
KW   Gypsy-6_DAn-LTR; Gypsy-6_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018403; Positions    6450    6188.
XX
SQ   Sequence 263 BP; 108 A; 46 C; 51 G; 58 T; 0 other;
     tgtgggattg ggacatatta ggacttatag aaagggccac acttaagaaa ataccaattt        60
     gccaaacacc aatccaaaga caatgatata caacactgtc gtttgggaag aagaagagag       120
     ttgaacgcag aaaagagaag acgcggaaaa aaagctaccg aagcccatcg agtgcgaaag       180
     tcgcgattat tataaaaaga acattcattt ttgtatacgt tacccaaaga atttaaataa       240
     actataattt gtacaaccct aca                                               263
//
ID   Gypsy-6_DAzt-I repbase;    DNA;    INV; 5829 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5829
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 760-760 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           946..2508
FT                 /product="Gypsy-6_DAzt-I_1p"
FT                 /translation="MSLDWSFEEVNQNDNSEIICCICVRQVEYRAQLFRTS
FT                 CNHVFHRVCFNTRGGEKTVCPACNKPLQPSAPSLAEELALAQASVSNDDPP
FT                 IQVRMRTRSQGLAADTSVSVENLPSVGPPEAIVPSMPPPNRETADAANPGL
FT                 AQMSQALTDAMAQISLLSQAMTQMTQTMEVGFQRLTSQAVPPQTNQSTGTV
FT                 QPSGEAQTFEQLFQIPPRESVNAQMSQANDSNVSATPWGSQQIAGLRPDRI
FT                 GQIIAGWKVRFSGNSSMSVEDFIYRIEALTKQTLEGNLDLVARNAIYLFEG
FT                 SASEWFWRYHKSVPSVNWPQLSSALKTRFRDGRTDLEIRTAIVQRKQKQNE
FT                 PFDTFYEAIVALADKLVSPMSEMALLEVLKSNLLSDIQHEILYIPVLTVAQ
FT                 LRNIVRTRERFIQSVTKSSVSTEPKRSPMRRQVHEIMVQTDQEDESEVDGI
FT                 EPLVVAAVSLSCWNCGTIGHRYQDCVGDRTVFCYGCGKRDTYKPSCSRCND
FT                 PKNSASRAPSTSARRPFSSKATNTQ"
FT   CDS           2430..5732
FT                 /product="Gypsy-6_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="RSKKLSKSCTIDECTQTIQFESNEHPVIEASTASSLP
FT                 DIPNIPDFPSHTRMLTPDLKEPIFPNRSRKRLLKYRQMVKNERANVLASVV
FT                 NASNDWRPYAQVTVLGRTLSGLMDTGASISCIGGAFAADLLRDQTQLKPVK
FT                 IAVRTADGQSQPIIGKITTEIGFQGESKLLKLFIVPSLAQDLYLGIDFWSC
FT                 FDLLPAFLANKSSSPGMASISFDSTLHVPLSKTQQDQLAKTVNMFPSFAKQ
FT                 GLGKTSWLSHDIDVGNAKAIKQRHYAVSPAIEKQMYLEIDRMIALGVIEES
FT                 DSAWSSPVVLVRKPGKVRLCIDSRKLNEVTVKNAYPMPLIDGILSRLPRAE
FT                 YISSIDLKDAYWQIPLEVSAREKTAFTIPGRPLYQYTVMPFGLCNAPQTMS
FT                 KLMDKVIPPNLRNEIFVYLDDLLVVSESFEQHIQALNILSGRLRDAGLTIN
FT                 VEKSKFCLQEVKYLGHVIGHGTIQTDVEKVQAIQEFPVPRSVKQVRRFLGL
FT                 TGWYHKFIKNYAGIAAPISDTLKTRRKFEWTEEAQKAFDTLKETMCDAPVL
FT                 HSPNFTIPFSIHCDASHTGVGGVLMQTDENGNEVPIAFMSRKLNQCQRNYS
FT                 VTEKECLAAVMCVKKFRAYVEGHQFSIITDHASLKWLMSQADLSSRLARWA
FT                 LKLQGFTFKILHRKGSQNIVPDALSRVHTEDLSYIGIDSLVDLNSDAFQSA
FT                 EYQELMSKIQANPSRLPDVRVVDKFIYRRAEHAAGDKISDDMCWKLWVPRV
FT                 LVTEVLKQGHEHPLASHSGINKTLERIRRFYYWPNLVGDVKDFVNNCELCK
FT                 CCKHPNHPLRPRMGKAGETDRFFQKLYVDFLGPYPRSRSGNIGIFVVLDHF
FT                 SKFPFLKVVKKFTAEAVIKFMEEDLFHCFGVPEVIVSDNGVQFKSHKFNDL
FT                 LEKYQIRHSYTAAYAPQTNASERVNRSVLAAIKAYIKPDQSNWDEQLSFIT
FT                 CALRSSVHAAVKSSPYRVAFGQNMITSGSTYQLLRNLSMLEDRSVVFDRDD
FT                 SFDLIRKTAAKAMQKQHIRNETTYNLRSREVTFQVGQEVYRRNFEQSSFTK
FT                 GFNAKLAPTFRKARIKRRLGNSYYELEDCQGRFIGKYHAKDIKQ"
FT   CDS           4147..5736
FT                 /product="Gypsy-6_DAzt-I_3p"
FT                 /translation="MQTDENGNEVPIAFMSRKLNQCQRNYSVTEKECLAAV
FT                 MCVKKFRAYVEGHQFSIITDHASLKWLMSQADLSSRLARWALKLQGFTFKI
FT                 LHRKGSQNIVPDALSRVHTEDLSYIGIDSLVDLNSDAFQSAEYQELMSKIQ
FT                 ANPSRLPDVRVVDKFIYRRAEHAAGDKISDDMCWKLWVPRVLVTEVLKQGH
FT                 EHPLASHSGINKTLERIRRFYYWPNLVGDVKDFVNNCELCKCCKHPNHPLR
FT                 PRMGKAGETDRFFQKLYVDFLGPYPRSRSGNIGIFVVLDHFSKFPFLKVVK
FT                 KFTAEAVIKFMEEDLFHCFGVPEVIVSDNGVQFKSHKFNDLLEKYQIRHSY
FT                 TAAYAPQTNASERVNRSVLAAIKAYIKPDQSNWDEQLSFITCALRSSVHAA
FT                 VKSSPYRVAFGQNMITSGSTYQLLRNLSMLEDRSVVFDRDDSFDLIRKTAA
FT                 KAMQKQHIRNETTYNLRSREVTFQVGQEVYRRNFEQSSFTKGFNAKLAPTF
FT                 RKARIKRRLGNSYYELEDCQGRFIGKYHAKDIKQ"
XX
SQ   Sequence 5829 BP; 1638 A; 1291 C; 1390 G; 1507 T; 3 other;
     ggtaaagagc gatcgtagag tttggcaatt ttgtcaaagt ggtagcatgg agttgtattc        60
     aaaaattttt ggcgcccaac gtggggccmt cttcggcttg ccccgaccaa gaaaatttca       120
     taaaagtcat caacacctat gagtgctgca tatcaatgta gtgtcttgcg acttattccc       180
     tcaccctttt ctccttctag agatacattg tcgttcaatg tctggcggat taagatttga       240
     gttgctggat tgtaagcagt ttgtaaaata actgaaaccc ccgcgctcaa ggttaatcaa       300
     aattactggg catcataacg aacagttaat atctggccgg atgagcaact ccgctaaata       360
     gcgcagttca atgtttttgt tggatgtagg ttccaaagtg gactagctct actgcctacc       420
     cacgaaaatg ggaacgtgtt gtttggagga tgagcttgtc cgtaccattg ctgatcattg       480
     tcggaagttt tggcctggat caggttactc agtggcttaa cgctacggcc tgcccgcgaa       540
     cggaagcaat agcatcaaag atggtgtatt ccttgggtca gcagaaacct tcctttttca       600
     cttccttctt ccttcatttc cttctttttc actttttcta atcctcaata tttcattttt       660
     tttgtgtgtt gtgatctact atgtatcagg gtttaggatt gctcggatgt cggacagtgg       720
     ttgagaacta ccgtacggcc ccagtattta tccgatgacc ccttgtattg atagtccagt       780
     gttaatattg tcaaaaagtc agktagggga aaacactgcc gtgggacgat tgcttgcatg       840
     gtttcggaat tktgattata aagtatagaa atttctagtt ttttttagtt agaaggtaaa       900
     aatagagtgt aggagaggaa gaatattttt tagaattaga atagaatgtc cctagattgg       960
     agctttgagg aggtaaacca gaacgataac tccgagatta tctgctgtat ctgcgtgaga      1020
     caggtagaat atcgagccca gctgttcaga accagctgta atcacgtgtt tcatcgagtt      1080
     tgttttaata cgagaggcgg tgaaaagaca gtgtgcccgg cgtgcaacaa gccccttcaa      1140
     ccatccgctc ctagcttggc agaggaatta gccttagcac aggcgagcgt ttctaacgac      1200
     gatcctccga ttcaagttcg gatgagaacc cgatcgcagg ggttggccgc agatacatct      1260
     gtgagtgttg agaatctgcc ctccgttggt ccacctgagg ccattgtgcc aagcatgcca      1320
     cctccaaacc gcgagactgc ggatgcagcc aacccaggct tggctcaaat gtcacaggcg      1380
     ttgacggatg ccatggctca aatcagtttg ttgtcacaag caatgaccca aatgactcag      1440
     actatggaag taggtttcca gcgtttgaca agtcaagcgg taccaccgca aacgaaccag      1500
     tctactggaa cagtccaacc tagtggagaa gcccaaacct tcgaacagtt gttccaaatc      1560
     ccccctcgag agtctgttaa tgcccaaatg agtcaggcta acgattcgaa tgtctcagcc      1620
     accccatggg gatcacaaca gatagcggga ctacgaccag ataggattgg acaaataatc      1680
     gcagggtgga aagtacgatt ttccgggaat tcgtctatgt cggtagaaga ttttatatat      1740
     cgaatagaag ccctaaccaa gcagaccttg gaaggaaacc ttgatctggt tgcccgaaac      1800
     gcgatttacc tttttgaagg cagtgctagc gagtggtttt ggcgctatca taaaagcgta      1860
     ccctcggtga actggccgca gttaagttca gcccttaaaa cccgctttag agatgggcgt      1920
     accgatttag aaattcgtac ggctatagtg caacgaaagc agaagcagaa cgagccattt      1980
     gacacgtttt acgaagccat cgtagcgcta gcagacaagt tagtaagccc catgtccgaa      2040
     atggcactgt tggaagtgct caagtcgaat ctcttgtcag acatccaaca cgaaatattg      2100
     tatattccag ttctgactgt agcgcaattg cgaaacatag tgcgcacacg cgagaggttt      2160
     atccagtctg tgactaagtc tagtgtcagc acggaaccga agcgtagtcc tatgcgaaga      2220
     caggttcatg aaattatggt gcagacagat caggaagatg aatctgaggt cgatggaata      2280
     gagccgctag tggtcgcagc agtcagcctt tcctgttgga attgtggtac tattggacat      2340
     cgatatcaag attgcgtagg ggatcgaacc gtcttttgct acggctgtgg caaaagagat      2400
     acgtacaaac cgtcgtgttc cagatgtaac gatccaaaaa actcagcaag tcgtgcacca      2460
     tcgacgagtg cacgcagacc attcagttcg aaagcaacga acacccagtg atcgaagctt      2520
     cgacagcttc atcactccct gatataccta atatccccga ctttccctca catactcgta      2580
     tgttaacccc ggatttaaaa gaacccattt ttccgaatcg atctcgcaag cgattgctca      2640
     aatatcgcca aatggtcaaa aacgagcgcg caaatgtatt ggcgtccgtc gttaatgcgt      2700
     ctaatgactg gagaccctat gcacaagtga ccgtactagg aaggacgctc agtggactta      2760
     tggacactgg tgcatccatt agttgtatag gtggagcgtt tgcagccgat ttgctccggg      2820
     atcagactca gttgaagcct gtgaaaatag cagtacgaac ggccgatggt cagagtcaac      2880
     ctataattgg caagatcacg actgagattg gatttcaagg cgagagtaaa ttgttaaaat      2940
     tgtttatcgt cccttcttta gcgcaagatt tatatctggg catcgatttt tggtcctgtt      3000
     ttgacttatt accggcgttt ctggcaaaca agtcatccag tccaggaatg gccagtattt      3060
     ctttcgatag tacgttgcac gtgccattgt caaagactca gcaagatcag ttggcaaaaa      3120
     cggtcaacat gttcccctct tttgcgaagc aaggtcttgg gaaaacgagc tggctgtcgc      3180
     acgacattga tgtgggcaac gctaaagcaa ttaagcagcg acattatgcc gtgtctccag      3240
     ccatagaaaa acagatgtac ctagagatag accgaatgat agctcttggg gtaatcgaag      3300
     aatcagatag cgcatggtcc tcacccgtag tcctcgttcg taaacctgga aaggtacgat      3360
     tgtgcattga cagcaggaaa ctcaacgaag ttacagtcaa aaacgcttat cccatgcccc      3420
     taatcgatgg tattcttagt cgtctcccta gggctgagta catctcaagt attgacttga      3480
     aggatgcata ttggcaaatt ccgttggaag tgagcgcgcg tgaaaaaact gcgtttacta      3540
     tacccggacg tccgttgtat cagtacaccg tgatgccatt tggtttatgt aatgctccgc      3600
     aaaccatgtc caagctgatg gataaggtga taccgccaaa tttaagaaac gagatatttg      3660
     tttacctcga cgatttgctg gttgtctccg aatcgtttga gcagcatata caagccctca      3720
     atatcttgtc tggcagatta cgagacgcgg gtctgaccat taacgtggag aagtctaaat      3780
     tttgcctaca ggaggtcaaa tatttaggcc acgttatagg ccacggaact attcagacag      3840
     atgttgagaa ggtccaagcg attcaagagt ttccggtacc gcgatcagtg aagcaagtcc      3900
     gtaggttttt aggtctcact ggttggtacc ataaattcat aaaaaactat gcgggtatcg      3960
     ccgccccgat ttcagatacg cttaagaccc ggcgaaaatt tgaatggaca gaggaggcac      4020
     agaaagcgtt tgacacctta aaagaaacaa tgtgtgacgc tcccgtgcta catagtccca      4080
     atttcaccat accgttttcc atccattgcg atgcgagtca caccggtgtt ggcggcgtct      4140
     tgatgcaaac ggatgaaaat ggaaacgagg tacccattgc atttatgtcg cgcaaattaa      4200
     accaatgtca acgtaattat tccgtgacag aaaaagagtg cttggcagcg gtaatgtgcg      4260
     taaagaaatt cagagcctat gtagaaggtc atcagttttc cattattacc gatcatgcat      4320
     cgctaaaatg gctgatgtcc caagccgatt taagctcaag gcttgcgcga tgggcactga      4380
     aactgcaggg ctttactttc aagattctgc acagaaaagg aagtcagaat atcgtaccgg      4440
     atgcattgtc acgagtgcat accgaggatc tctcgtatat tggcattgat agtctcgtgg      4500
     atctaaactc tgacgccttt caatcagccg aataccaaga actcatgtcg aaaatccagg      4560
     ctaatccgtc tcggttaccc gatgtcaggg tagtggataa attcatatat cgtcgcgcgg      4620
     aacacgccgc tggcgataaa attagcgacg acatgtgttg gaaactttgg gttcccagag      4680
     ttctggtgac agaagtgctt aagcaaggcc acgaacatcc attagcgtcc cacagtggga      4740
     tcaataagac gctagaaaga attcgacgtt tttattattg gcccaactta gttggcgatg      4800
     ttaaagactt tgtcaataac tgcgagctgt gcaaatgttg caagcatccc aatcaccctc      4860
     ttcgtccgcg aatgggcaaa gcaggagaaa ccgaccgatt tttccaaaag ctgtacgtgg      4920
     atttcttagg cccgtaccct cgaagtcgat cgggaaatat cggcatcttt gtagtactcg      4980
     atcacttctc aaaattccct ttccttaagg tggtgaagaa atttacggcg gaggcagtga      5040
     tcaagttcat ggaggaagac ctattccatt gcttcggagt accggaagtg atagtgtcgg      5100
     ataatggtgt gcaattcaaa tcgcacaagt tcaatgacct attggaaaaa taccaaattc      5160
     gacattctta caccgccgcg tacgccccac aaacgaatgc gtccgagcgc gtaaatcgct      5220
     ccgtactagc cgctattaag gcgtacatta agcccgacca atccaattgg gacgaacagc      5280
     ttagcttcat cacttgtgcg ttgcgatcta gtgtgcatgc agctgtcaaa agtagcccat      5340
     accgtgttgc ttttggccaa aacatgataa ctagcggatc cacgtatcaa ctactaagaa      5400
     acctaagcat gttagaagat cgatctgttg tttttgatcg ggacgactcc ttcgacctaa      5460
     ttcggaagac agctgcgaag gcaatgcaaa agcagcatat aagaaatgaa acgacgtata      5520
     accttcgaag tcgagaagtt acttttcaag tgggtcaaga ggtatataga cgaaattttg      5580
     agcagagtag cttcacaaaa gggtttaatg cgaaactggc tcctactttt cggaaggcac      5640
     gaattaagcg gaggctcgga aacagctact acgagttaga agactgtcag ggacgattta      5700
     ttggaaaata tcacgctaag gatatcaagc agtaaataca acctgatacc actgcctagg      5760
     tcaatagcac tccaagcgcg gatcacgctt tggtaggttg aaccccaaag tgtgatttca      5820
     gtggggggg                                                              5829
//
ID   Gypsy-6_DAzt-LTR repbase;    DNA;    INV; 2268 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2268
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 810-810 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2268 BP; 662 A; 509 C; 459 G; 636 T; 2 other;
     tgtaatgttc gacgcctgtc gtgcagtttg aaactcaacg gttttgtttg cgatactcgc        60
     tccgaaaaaa atactgactt acgatcatgg gagcttttat agagctttcg gatcgaacag       120
     ctgttttgga aaaaggtggc agcgccgtca cattgtggtc attccgtatt gccctgataa       180
     ttattgcgaa tttcttttac ctaaagaacc gggcgacgga agatagagga aaaaagaaag       240
     accaaaaaaa aacgtggccg accttccttg gcgagccctt tctcctcgtg gtcgtcagcg       300
     tgaacgcaag tgaaaaaaaa aattgatagc tctgccccag acaagggcca ctcgaaacgc       360
     aagtcacggt gccaagtgca gcgcccaaat ataatttggt cgactgggat aattgcccat       420
     ccccaatact gcagcgggac aaactaaaac cggttggaga aagacgtcac gttattaact       480
     cattatttat gcaagtagtg gtgcaattcc ctctgggtaa atatcaatcg agaaaatata       540
     gacagggtga ttagcctcat ctcttttccg tgtaggatta gcaccactaa ttcaggccta       600
     gaagcagccg atctgcgtgc gtkggtgcat tgccctctat tagggtgttc ctcgacacgc       660
     cacmgcagcc gtcgcgcccc aagctcgaat agtcgtgctg accctgggat cgccctcctg       720
     caggggaatc tggaatctgt tgaacagccg tcgttcctgt gtgggacggt cagcgcgaat       780
     ccccgttctt gtacgggcta tatgttcggc ccagttggtt gccgtgcata ggacctgtag       840
     gcgtaccccc aaggaaacat aacctcaacg ccggccagtg actcggttaa gtgccaatcg       900
     gcatatccaa cttggatcag cggatagcag ttcggttggc ctctgtagac caagccttaa       960
     cagcagttga tatcgaaaaa aaaaaaaaaa aacgagattt ggaacttgac atgaattttt      1020
     tttatcttag aattagtatt gcagtaaaga aaaggaagga gagtaaatta tggatactcc      1080
     ctggcagtaa aataatgttc tcactgatta aatattgaat attgaaagat gtatctctag      1140
     gagagaattc atgtccaggt caaaagaaaa aaaataataa taataagcat tgggttaacc      1200
     tcgtactaat aacgttatat ctaccatcac agagacacat catcattgta acactcctcc      1260
     gttcatgccg atacccattc atttattcat ccatctactc atcatcatca tcacagctaa      1320
     cacaaggaaa gatctttctg cgtggagcac cattaataac agtatcgtaa gtgtttaatc      1380
     tatgaagaat gaagaagtga ggttgctggt ttgtccaact tgtgtgttgt aggccatcgt      1440
     gcacgagttt ctcccaaata ccaatgcaat gttaaaacaa ttttcaatga ccacatgaca      1500
     tgaatatctt tgattgtagc tgttaaaaga aatttcttgt attactttat cggaatctat      1560
     ggtcatgagg tagaccataa tgtcgcgttg ctaaaacgta atttgtatcc aatttttttt      1620
     agcattaacg aatttaataa ccctagctat acgattatta tgaatttatt tccccttaac      1680
     cttcccctat tacaacttat aagcatatat attcttgttc catataatat aacgattatt      1740
     taatgctagg tgcagttaga gataggttgg ttcttaccat aaacgaatta tgttggattt      1800
     tgtaaataaa attagtattg aaatgaatca aggctaaatc tcgttaatag aaaccatgca      1860
     gcatcgtctt gtagtagtgt aatctaccga cagctctgtt ggagggatct ttaatataaa      1920
     ttgaattggc ccttaaggat catggtaggg tgggcgtttt cgcacttggc gatcacacaa      1980
     ccaacagaga cctgactatt gatagtatcc cctttctcct atagctgctg acctatccct      2040
     atgacctcct gcatcccctc tcacactctc catttcctcc ttgtacgcga aacctataat      2100
     ttttaaacac ttctccctgc aactctacgc gggagccccc aaattggtgg taccctgtcc      2160
     tcaaagccca cacccagccg accagagaca aaagccgaag ccagcgcgta cgtccttcca      2220
     tcaatttgag tttcatctgc tcctaacccc tgtacgttgt atgctaca                   2268
//
ID   Gypsy-6_DBi-I repbase;    DNA;    INV; 4802 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DBi_;
KW   Gypsy-6_DBi-LTR; Gypsy-6_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4802
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 831-831 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2220-2759] - Reverse transcriptase
CC   Positions [3821-4294] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2945..4771
FT                 /product="Gypsy-6_DBi-I_1p"
FT                 /translation="MENTTRRSLRRVEEMPNLKSSCHQYRLDAEHELHTDA
FT                 SAVGLAGVLLQRDEDQLKPIAYYSRATSKPEKNYHSYELEALAVVESLERF
FT                 KYYIYGKKIKVITDCNALKTSMEKRELIPRIARWWLRIQEFDIDIVHRAGT
FT                 QMNRVDALSRAPFEDAREMDTACLKIAKTLIDEEDWLFSIQLQDEKIQKIV
FT                 ADMKMKKKAETDEYVIEQDRLFRKHNNNLLWVVPKQLRFHILHECHDKAGH
FT                 MSTDKTMARILNLFWFPRMRNYVKSYVKSCVGCAFYKTPGGRQEGQYHYDD
FT                 IKPIPFSTIHMDHLGPFPKSSKRNEHILVIVDAFTKFTIVRAVKSTATKHV
FT                 LDVLQEVTSYLGMPDRIVTDRGTAFTSKDFEKYCKSNNVKHILNAVRTPRA
FT                 NGHAERTNRIILSMLLPSNDIDKRWDDNIRSIQWSINTMVNSTTKCSPFQL
FT                 LYGYEPRDILKNAITNIIQSQDQKMLTDVELEQLRADAATTVNDHRAAAKK
FT                 RYDAKHAKPTVYSLGDLVLVENEPFSTGTSRKLEPRYKGPFIINKVLPNDR
FT                 YLVEDIPHAQRKQRHYKSVYSSDKMKRWCELPPEEPDEDDDLEDDPPRILR
FT                 GRRDFVRRGRL"
FT   CDS           join(702..1850,1854..3023)
FT                 /product="Gypsy-6_DBi-I_2p"
FT                 /translation="MKELKDMLAQLVTVQMGNAAPAQAGNHQQQQQPIIDL
FT                 DIDEINERSIPVQATNNVRQASVKEIANTLPEYDPSDDNAISVNQFIDRVN
FT                 KVVDAYQWDEKFLLLAIYTKLKGPAKMWLDSSPILHTTWKHFADAIQDEFG
FT                 ANPDEAEVHFNMANATRRSKETVKEYCFRMSALGVRYKLSEAAIIRYVRSG
FT                 LQHRELQNSIAAIHFSTMKQLRDAAESYFVNRGRSSTSKKEYSTKASNFEQ
FT                 KQDTDVKPPRSKESLKCYNCGEMGHFANSCPKEKKKSRCTKCNKFHEPNGS
FT                 CQAQNVMRLGAANQDNLFTRKICVHSHEYSAFIDTGSQASLIRQTVAEQIN
FT                 AKRHKCSMKIRGICGGSRILTEAMTVDMGIDGRRSQRRCMQTTIYCRRTFF
FT                 GTGVIISAHLELNFESGDSIVKRAVHQPTTPVSDTKIEKLLDNFQNDKESE
FT                 QMRSLLEKFADVFSTGLEGIGKTSVVKAHITVESSQVVAQAPYRVSEPKKE
FT                 IVSRMVDELLKQDIITLSTSEYASPVVLIKKPNGSDRMCVDYRRLNKLIKK
FT                 ENFPVPNIEERLQEAKRFKYFSSLDLNSGYYQIEIAPESRKFTAFITTDGL
FT                 YEFKRLPFGLKNAPAVFNRLMAELQKRVQKGDMIHYMDDILIGSQTFDEMY
FT                 EKLERILKVLKECGLTLNLEKCELYKQSITFLGHQIHAEGISPGEIKTNAI
FT                 RMFPTPANVTDVRKFLGLTGYFRKFVPGYAIISAPLRILLRKDHPFTWKTP
FT                 QEEAFDELKKCLISNPVVTSIA"
XX
SQ   Sequence 4802 BP; 1533 A; 1056 C; 1171 G; 1042 T; 0 other;
     gttcagaagt gggataagtg tggttggata ggtgtgaagc ggaggagttg tgccaagaac        60
     tctaagaaaa gcagcgagaa tcgtcggcgt ggaaagtttg caatgggatg tgttcccaaa       120
     ggtctatgtg acaaaggaaa ttgcagatta cggatgtgtt ccagttctac gtggcaggcg       180
     gattcaagca aaacagatcg ggaatcttag tgaacccgtg gactcaagca aaggagcaag       240
     atcaggattc ttagtgagcc tgtggccgca gaagtctcaa gagcagcaga agtctcaaga       300
     gaagccaagc acaaagcagt tgtgagtatt ggtgaatttc acaagtcgat gcaaataaga       360
     attctctaga agccggagaa catacataca tacaaggagt ttgtgtgtat tcgtagagtg       420
     aacaagcaga tgcagaactt tgtgaggtac atatagttgt ctcgctcgca aagaggactg       480
     ccaacctagt gtcaaaaaaa atcccaggga ttgccaaaat gccgaagata gcagatctta       540
     agggcgacga gttaagattc ctgctaagat cgagaaacgt gtcagtttca gagactcata       600
     gagtttgaac aatcggagga cgtcgagctg ccagcatcag tggggctcac catgcagcaa       660
     gaagaagcga tgtcagcaca gtcagccaat tgcaaaacga gatgaaggaa ctaaaggaca       720
     tgctagctca attggttacc gttcaaatgg gaaacgcagc acctgcacag gcaggaaatc       780
     atcagcagca acaacagcca ataatcgatt tggatatcga cgagatcaac gagaggagca       840
     ttcctgtaca ggctaccaat aacgtgaggc aagcttcagt taaggaaatt gccaacacct       900
     tgccagagta tgatcccagc gacgacaacg ctatttcagt caaccagttc atcgatcgtg       960
     tcaacaaagt tgttgatgcc taccagtggg acgagaagtt cctgttactc gccatttata      1020
     ccaagctaaa aggtccagcc aagatgtggc tagattcatc acccattcta cacactacgt      1080
     ggaagcattt cgccgatgct attcaggacg agttcggcgc aaatccagac gaagcagaag      1140
     tgcatttcaa catggccaat gcaaccaggc gatcaaagga gacggtaaag gagtattgtt      1200
     tcaggatgtc agcccttggg gtgcggtaca agctcagcga ggcagcgatt attagatatg      1260
     ttcgctcagg tctacagcat cgagaattgc aaaacagtat tgcagcaatt catttctcaa      1320
     caatgaagca acttcgtgat gcagccgagt cttattttgt caacagaggt cgatcgagta      1380
     cgagtaagaa agaatattca acgaaagcca gcaacttcga gcagaagcag gacaccgatg      1440
     ttaagccgcc aaggtcaaag gaatccttga agtgttacaa ttgcggagaa atgggacact      1500
     ttgctaattc gtgtccaaag gagaagaaaa agtcacgctg taccaaatgc aacaagttcc      1560
     acgagccaaa tggaagttgc caagcccaga atgtcatgcg tttaggagcc gcaaatcagg      1620
     acaatctatt caccaggaaa atctgcgtac actcgcacga atacagcgct ttcatcgaca      1680
     caggtagtca agccagtctc atccgacaaa cagttgccga gcaaattaac gccaagcgtc      1740
     acaagtgctc tatgaagatt agaggcattt gcggaggttc gcgtatcctc actgaagcga      1800
     tgactgtgga tatgggaatc gatggaagac gatcacagcg aaggtgtatg tagcagacga      1860
     cgatatattg caggaggact ttctttggga caggcgtcat catctcagct catctcgagc      1920
     tcaactttga gtcaggcgat tcaatagtca aacgagcagt ccatcagccg acaacccctg      1980
     taagtgatac caagatcgaa aagcttctgg acaattttca gaacgacaag gaaagtgagc      2040
     aaatgcgcag cttactggag aagttcgccg atgttttctc gacaggattg gaaggcatag      2100
     gtaagacaag cgtggtcaaa gcacacatca cagtcgaaag cagtcaggta gtagcacaag      2160
     ccccataccg agtttccgag ccaaagaagg aaattgttag cagaatggtc gacgagctgc      2220
     taaagcagga tatcatcacg ttgtcaacgt cagagtacgc cagcccggtg gtgctcatca      2280
     agaagccaaa tggtagcgat cgaatgtgcg tcgattaccg ccgcctgaat aagctgatca      2340
     agaaggagaa tttcccagtg ccgaacatcg aagagcgtct gcaggaggcg aaaagattta      2400
     agtacttttc atccctggac ctgaacagtg gatactatca gatagagata gcaccagaga      2460
     gccgaaaatt tacagcattc atcaccacag atggattgta cgagttcaag cgacttccgt      2520
     tcggattgaa gaacgcacct gcggttttca atcgactcat ggcagagtta caaaagagag      2580
     tgcagaaagg cgacatgatt cactacatgg acgacatcct tattggcagc caaacatttg      2640
     atgagatgta cgagaagctt gagaggatcc tgaaagttct aaaggagtgc ggactaacgt      2700
     taaacctgga aaaatgtgag ttatataagc agtcaataac atttcttggt caccagatac      2760
     acgcagaagg aatcagccct ggagaaatta agacgaacgc tatcagaatg tttccgacac      2820
     cagccaatgt aaccgacgtg agaaagtttt tgggtctcac tggttatttc cgcaagtttg      2880
     ttcctggtta tgccataatt tcagcgccat tgagaatcct attgcgcaag gatcatccgt      2940
     ttacatggaa aacaccacaa gaagaagcct tcgacgagtt gaagaaatgc ctaatctcaa      3000
     atccagttgt caccagtatc gcttagacgc agagcatgaa ctacatacgg atgccagtgc      3060
     cgttggttta gccggagttt tgctacaacg tgacgaggat cagctgaaac caatcgctta      3120
     ttatagccga gctacttcca aaccggagaa aaactatcac agctacgaac ttgaggctct      3180
     agccgtcgtg gagtccttgg agcgattcaa atactacatt tatggcaaga agataaaagt      3240
     tatcaccgac tgtaatgccc tgaagacatc gatggagaag agagaactga taccccggat      3300
     cgcaagatgg tggttgcgta ttcaggaatt cgacatagac atcgttcatc gagcaggaac      3360
     acagatgaac cgcgtagacg cactcagtcg agctccattt gaggacgctc gagagatgga      3420
     taccgcatgt ctgaagatag caaagacatt aatcgacgaa gaggattggc tattttctat      3480
     acagctgcag gacgagaaga ttcagaaaat tgttgcagac atgaagatga aaaagaaagc      3540
     cgaaaccgac gagtatgtga tcgagcaaga tcgcttgttt cgaaagcata acaacaattt      3600
     gttatgggtt gtgccgaagc agttgagatt tcacattctg catgaatgtc acgataaggc      3660
     cggacatatg agcacagata agacaatggc acgaattcta aatctgtttt ggtttcctcg      3720
     aatgcgaaac tatgtcaaaa gctacgtcaa gtcatgtgta ggctgtgcgt tttataaaac      3780
     accaggtgga cgtcaggaag gtcaatacca ctacgatgac atcaagccga ttccattttc      3840
     cacgatacac atggaccacc tggggccatt tccgaagagt tccaagagaa acgaacatat      3900
     tctcgtgata gtcgatgcat ttaccaagtt caccatcgtt cgagcggtga aaagtacagc      3960
     aaccaaacat gtcctggatg tcctgcaaga agttaccagc tacctgggaa tgccagaccg      4020
     cattgtcacc gatcgtggaa cagcttttac atccaaagac ttcgagaagt actgcaaatc      4080
     aaataatgtg aaacacatct taaatgccgt aagaacaccc agagccaatg gtcacgcaga      4140
     gcgaacaaac cgaatcatct tgtcaatgtt gttgccttca aatgacatcg ataagcgttg      4200
     ggatgacaac atccgatcaa tccagtggag catcaatacc atggtaaata gtacaactaa      4260
     atgctcccca tttcagctcc tgtacgggta tgaacccaga gatatcctga agaacgccat      4320
     aaccaacatc atccaaagcc aggaccaaaa gatgctaaca gacgtggaat tggaacagct      4380
     tagagcagat gctgcgacta ctgtcaacga tcaccgagct gctgccaaga aacgctacga      4440
     tgccaaacac gcaaagccaa ctgtttacag ccttggagac cttgtattgg tcgagaatga      4500
     gccattcagc acgggcacat cccgcaaatt ggagcctcgc tataaaggtc ctttcataat      4560
     caacaaggtc ctgccgaacg acagatatct tgttgaagat atccctcacg cacaacggaa      4620
     gcagagacac tacaagtcgg tgtattcgtc cgacaagatg aaacgctggt gtgagctgcc      4680
     accagaggag ccagatgaag atgacgatct agaagatgat cccccacgaa tcctgcgagg      4740
     acgcagagat tttgtcagga gaggccgact gtgaacagcg cctaatttag aatataatca      4800
     tc                                                                     4802
//
ID   Gypsy-6_DBi-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DBi_;
KW   Gypsy-6_DBi-I; Gypsy-6_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-195
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 832-832 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 195 BP; 65 A; 39 C; 34 G; 57 T; 0 other;
     tgccctagaa tagtgttgat aagtcccttt tggtagtgtt accagacttt gtaatgatag        60
     aatagtcgag aaagagtcgt actcaagagc agaacgtgta cagagcgctt taagttacaa       120
     ttgaaaatgt aatattatat ccaacctcat tatccttaat aaacctatac cactcgataa       180
     agccagccct tctca                                                        195
//
ID   Gypsy-6_DBp-I repbase;    DNA;    INV; 4563 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.05, Created)
DT   14-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DBp_;
KW   Gypsy-6_DBp-LTR; Gypsy-6_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4563
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 663-663 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3070-3543] - Integrase core
CC   'ATATA' target site duplication
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..3915
FT                 /product="Gypsy-6_DBp-I_1p"
FT                 /translation="MELQNRNFVEMCKAMQASVRPQNQVVLPKFNPDVTGV
FT                 DATQWCATASIIMDEQKIDGSALIMMLSSCMQGSASAWLAQICYPGINWEQ
FT                 FKELFIQRFEIKETPAAMFLNLLNSRPAHNECPAVYASRMVTSLTTKWRNM
FT                 NVEEIAVSTILAHMANFDNRLQRMVFSSNVQTRSQLQMELKAFTFDKKRSA
FT                 GNTDGNSGDCKRAKIVCHLCKKPGHKMAECKLKRSGPENKQHRDLQNVTCY
FT                 RCGQLGHLANRCTNNAAKSGAVTEKKCNQCFVAEPKGVLTHQGEIFPICFD
FT                 SGAECSLIRSSVAEKFDGKLINNIVIIRGIGDAGISSKLQKLSKCIINGNI
FT                 VEILFHVIADKHLTNDIVIGREILSPGYEIILTPDKFKLVKSKSVNVCKVS
FT                 EPSALLLNVDTEMIGNDKENLIKLLQDYSAAFIDGIPCTKVNTGEMTIRLI
FT                 DPNKTVQRRPYRLSPNEKEIVRERITELLNCNIIRPSCSPYASPILLVKKK
FT                 NGSDRLCVDYRELNSNTVSDRYPLPLINDQIARLAGAKYFTCLDMASGYHQ
FT                 IPIHPDSVECTAFVTPDGHYEYLTMPFGLKNAPSVFQRAIINALGNLAYSY
FT                 VIVYMDDIMVVSSTIESGMERLRIVLDVLTAAGFSFNIAKCGFLKTTVQYL
FT                 GYEVRAGELRPNPRKIIALNSLPPPQTVRSVRQFIGLASYFRKFVPRFSQI
FT                 MKPIYSLTSSKMRLEKLLILVNEPVLVIFDPQHPIELHTDASSYGYGAILM
FT                 HRINGSPHVIEYFSKTTSPAESRYHSYELETLAVVESVKQFRHYLVGRTFV
FT                 VYTDCNSLKSSRTKIDLTPRVHRWRAYLQPFEFTIEYREGKRMAHVDFLSR
FT                 NHIQEASKVEKSLVPEKRVNLAEISSDWLAAEQRQDSEITDIINKLNSKEL
FT                 TDDVAQTYELRKGVLFRKVQRNGRTRCLPVVPHAFRWSVINQVHESIMHLG
FT                 WKKTLDKTYQYYWFAKMNKYVRKFVDSCITCKTVKGSSGKIQAELHPIPKV
FT                 NMPWHTVHIDITGKLSGKNDLKEYVIVQIDALTKFVYLFHTLRLDSDSCIQ
FT                 AVKSSISLFGIPQRIIADQGRCFTSGKFLEFCTSQKIKLHLIATGGSRANG
FT                 QVERVMSTLKNLLSAVESSHRSWQDALGEIQLSLNCTVSSATKASPLELLV
FT                 GKEARPLGLIPPYDTEMEVDKVNARDRAIENMKNQASYDKIRFDKNKAAVE
FT                 RHKVGDFVLLKNEERHQTKLDVKFKGPFLVSEVLEGDRYILKSLHNKRTYK
FT                 YCHEDLRKMPDGYVPSELECPPETC"
XX
SQ   Sequence 4563 BP; 1476 A; 747 C; 1017 G; 1322 T; 1 other;
     tcagaagtgg gatcagtgcc aactcctgca ttttctgaag atcagtggcg taccattatg        60
     gaactacaaa atcgcaattt cgtcgaaatg tgtaaagcta tgcaagcgtc tgtgcgtcca       120
     caaaatcaag tggttttgcc aaaatttaac ccagatgtaa ctggagtgga tgcgactcaa       180
     tggtgtgcaa cggcaagcat tatcatggac gaacagaaga ttgatggcag cgcacttatc       240
     atgatgttga gtagttgcat gcagggcagt gcttcagcgt ggcttgcaca gatctgctat       300
     cctggcatta attgggagca gtttaaagaa ctatttatac agcgcttcga gattaaggaa       360
     acgccggcag ctatgttcct gaatctgctg aacagccgtc cagcccacaa tgagtgccct       420
     gcagtgtacg caagccgtat ggtgacgtca ttgaccacaa aatggcgcaa tatgaacgtc       480
     gaggaaatag ctgtatccac tatacttgcg catatggcca attttgacaa ccgtttgcag       540
     cgtatggtgt tttcgtcaaa tgtacaaact agaagtcaac tccaaatgga actgaaagca       600
     tttacatttg acaaaaagcg gagtgctgga aatactgatg gtaatagcgg cgactgcaag       660
     cgagccaaaa ttgtgtgcca cttatgcaag aaaccaggac ataaaatggc ggagtgtaaa       720
     ttaaagcggt ctggaccgga gaataaacag catcgcgatt tacagaatgt gacctgttac       780
     cggtgtggac aacttgggca tcttgcgaat cggtgcacga acaatgcagc taaatctgga       840
     gcagttactg agaagaaatg taatcaatgt tttgtggctg agccaaaagg agttttgaca       900
     catcagggtg agatctttcc tatttgtttt gactctggag ctgaatgttc gcttattcga       960
     agtagtgttg ccgaaaaatt tgatggcaaa cttattaata atattgtcat aatacgaggt      1020
     attggcgacg ctggcatttc cagtaagcta caaaaactat ctaaatgtat tattaatgga      1080
     aatattgtag aaatactgtt tcacgtcata gcagataagc atctcacaaa tgatattgta      1140
     attggtaggg aaatccttag tccaggatac gaaatcatct tgacacctga taaatttaaa      1200
     ttggttaagt ctaaatctgt aaacgtctgt aaagtctctg agccatctgc cttgctactt      1260
     aatgttgata ctgaaatgat tggtaatgac aaagaaaact taattaaatt acttcaagac      1320
     tattcagctg catttattga tggaatccct tgcacaaagg ttaatacggg tgaaatgact      1380
     attagattaa ttgatccaaa caaaactgtg cagcggcgtc catatcgttt gagtccaaat      1440
     gaaaaagaaa ttgtacgtga aaggataact gagttgttaa actgtaacat tattcgacct      1500
     agttgttctc cctatgctag ccctatactc ttggttaaaa agaagaacgg atccgatcga      1560
     ctctgtgttg attatcgtga actgaacagc aatactgttt ctgacagata tcccttacca      1620
     ctaatcaacg atcagattgc tagacttgcg ggtgcaaaat attttacttg tctggatatg      1680
     gctagtggat accatcagat acccattcat cccgattctg ttgaatgtac tgcgtttgtt      1740
     acacctgatg ggcactatga gtatctgaca atgccatttg gcctcaagaa cgccccgtct      1800
     gttttccagc gagccattat aaacgcattg ggaaatcttg catattctta tgtaatagtc      1860
     tatatggacg atataatggt ggtgtcatct accatagaat caggtatgga aagattgagg      1920
     attgttttgg atgtattgac tgcagcggga ttctctttta acatagcaaa atgtggattt      1980
     ttaaaaacta ctgtacaata cttggggtat gaggtacgag ctggagagtt aaggcctaat      2040
     ccgcgaaaaa ttattgcgtt aaattccttg ccaccaccgc aaacagttcg tagcgtaaga      2100
     cagtttattg gattggcgtc ttattttcga aaattcgtgc ctcggttctc acagattatg      2160
     aaaccgatat attccttaac ttcgagtaaa atgcggttgg aaaaattatt gattcttgta      2220
     aatgagcctg tacttgttat ttttgatcca caacatccaa tagagttaca cacagatgca      2280
     agctcttacg gttatggagc aatattaatg catcgaatca atggtagtcc ccatgtaata      2340
     gagtatttta gtaaaactac ttcccctgca gagtctagat accattcata cgaattagaa      2400
     accttggcag tggtagaatc cgttaaacag ttccgtcatt atttagttgg tcgtacgttc      2460
     gtagtgtata ctgattgcaa ttctcttaaa tcatcgcgga caaaaattga tctaacacca      2520
     agagtgcatc gttggcgggc gtatttgcag ccgttcgaat ttacaataga atatagagaa      2580
     ggaaagcgca tggcgcatgt ggatttttta tcgagaaatc atattcagga agccagcaaa      2640
     gttgaaaagt ctttagtccc tgaaaagcgt gtaaacttgg cagaaatctc aagtgactgg      2700
     cttgctgctg aacagcgcca ggattctgaa attactgata tcattaacaa acttaactcc      2760
     aaagagttga cagatgatgt tgcacagact tatgagttga gaaaaggtgt cttgtttcgt      2820
     aaagttcaga gaaatggaag aacccgttgt ctgccagtag taccccatgc atttcgatgg      2880
     tcagtaataa atcaagtgca cgagtccatc atgcatttgg gatggaaaaa gactcttgac      2940
     aagacttacc aatactattg gtttgctaag atgaataaat atgttaggaa gtttgtcgat      3000
     agttgcatta catgtaaaac tgttaagggt tcatctggga agatacaagc cgagttacat      3060
     ccaattccaa aagtgaatat gccatggcac acggtgcata tcgacataac tggaaaatta      3120
     agtgggaaga atgatcttaa ggagtacgtg atagtacaaa ttgatgccct aacaaaattt      3180
     gtttatttgt tccatacttt aagactagat tctgacagtt gtattcaggc agtgaaatca      3240
     tctatttctt tgttcggaat accgcagcgt ataatcgctg atcagggtag atgttttact      3300
     agtgggaaat ttttagaatt ttgtacatca cagaagatta agcttcatct tatagctaca      3360
     ggaggaagcc gtgcaaacgg tcaagttgaa cgtgtgatga gcacacttaa gaatctactg      3420
     tcagcggttg aatcgagtca ccgatcttgg caggatgctt taggtgagat acaactttcc      3480
     ttgaattgca cagttagtag tgcaaccaaa gcaagtcccc tagagttact tgtcggcaag      3540
     gaggctcgtc ctttgggttt aattccaccg tatgatacag agatggaggt agataaagtt      3600
     aatgctagag atagggcaat tgaaaatatg aaaaatcaag ctagttacga caaaataagg      3660
     ttcgataaaa ataaagcagc agttgaacga cataaagttg gagattttgt gttactgaaa      3720
     aatgaagaac gacatcaaac taaattggat gtaaagttta aagggccatt tttggttagt      3780
     gaagttctag aaggagatag atatatcctg aagtcattgc ataataagag aacttataaa      3840
     tattgtcatg aagatttgag aaagatgcca gatggttatg ttccgagtga attggagtgc      3900
     ccgcctgaga cttgttgaaa tggttatgat atatccgtgt gagaggatat gttatgtgaa      3960
     aaccaaatgt ccatatagag tatggaatga ttgaaatgaa gttgcaatag acttcgataa      4020
     gaaatgtttg tgaatggcgg atgtgtttga gaattcaaat ggaaataacc tggctgatgt      4080
     aaagtttatg catggtttat gaaccatgac aatatttgat tgaaatgtat gagttaaaga      4140
     tatggttttg agatttgagc tatctgcgtc attgggcaag cacaagtgaa agacgaaagt      4200
     tggaacatgg cgtgtggcgc tcttgacggg actatgctct taatcaagag gaaatcatag      4260
     tgacaataac tagagtcgaa ttttgaattg ctgagaagca aatggaataa attaaacgtt      4320
     aaaatgaatt taattatgta atgagaataa gaattgaaat ttgtttataa tgttgtgtag      4380
     aatgtaaaat aatgaaagat tttgaagtaa gtgaaaatgt ttagcataag gaaatatata      4440
     aaaaaaatgg tattcgaaat tgatgagtaa aagaaaacac aagctataat cacsgattta      4500
     taagtcatat ttgtaatatt aagattacag tacacgagga cgtgtaaatt gtcagaatgg      4560
     ccg                                                                    4563
//
ID   Gypsy-6_DBp-LTR repbase;    DNA;    INV; 372 BP.
XX
AC   .
XX
DT   14-DEC-2011 (Rel. 17.05, Created)
DT   14-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DBp_;
KW   Gypsy-6_DBp-I; Gypsy-6_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-372
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 664-664 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 372 BP; 101 A; 61 C; 101 G; 109 T; 0 other;
     tgtcggatct taaattatgg tagtcagtgt aacaaagaac aattctcgtc cctgccttaa        60
     ttgttgtttg ttagtacgct ttgttccttc tattcgccag atggtcagga tagttcgatg       120
     cgaataaggg agagagatgt tgcgtgaggt tagaggtttg agagagagag atgggcacta       180
     cgattgttgt gcgtgtatgc ttgagccact gcgagagaca gagatacaag tatgttcgtt       240
     gtagcttttc tggaggacat tttcggtaag ctagaattgc tggaggagtc tcaagttggc       300
     agtggcacga tcaagtgtat tcgccgtata caatccgtta aaaatatgga aaatcataac       360
     cagaacccga ca                                                           372
//
ID   Gypsy-6_DEl-I repbase;    DNA;    INV; 6048 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DEl_;
KW   Gypsy-6_DEl-LTR; Gypsy-6_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6048
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 520-520 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1745-2251] - Reverse transcriptase
CC   Positions [3271-3720] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1484..3325
FT                 /product="Gypsy-6_DEl-I_3p"
FT                 /translation="MIPARDRHRGWLEEKLSVAVVEAAKGFSEKDVDQFLK
FT                 TELESLENLQGTSNVAVHRITMKDDQPVKQRYYPKNPKMQGEINAKVDELL
FT                 EKGCIEPSRSPYSSPIVMVRKKTGKWRLCVDFRQINAKSVKDAYPMPMINY
FT                 ILDQLREAKYISSLDLKDGYWQIPLEAASRQYTAFTVPGKGLFQWKVMPFG
FT                 LHSASATFQRALDQVIGPEMMPHAFAYQDDIIVIGRTLEEHMRNLKEVFRR
FT                 LRAANLKVNADKCKFFRKELQYLGHRITDQGIGTDPEKVSAIALLKPPATA
FT                 KELRQYLGVASWYRRFVPDFATLVHPLNALLRKGVKWEWTDDHQQAFEAVK
FT                 ARLVADPILACPDFTKPFVLQTDASDYGLGAILTQNSDQGERVISYSSRTL
FT                 NGSEKNYSATEKECLAIVWAIRKLKPYLEGYHFKVITDHMALKWLNSIESP
FT                 TGRIARWALELQQYDFEITYRKGQLNIVADALSRQPLPETCRRLKTKSPGQ
FT                 PAKQAECSWIRDIRGKIAQNPQKYPDYLVEADRLYRHIPHRAGNEDVVAWK
FT                 LCVPIGSRQRVMAENHDMPTAGHMGSRKTIARVAARYYWPGMHRDMRRRAG
FT                 PRLGRFLGRNTGTRCY"
FT   CDS           4453..5565
FT                 /product="Gypsy-6_DEl-I_2p"
FT                 /translation="MSARRSSTQQRVEHEVREERAREQPVAKWRRDSDSVL
FT                 QLLASPLVSRSPSPVSEADEESTGEISDVELPSEEEDAGPNATEIAEVVAI
FT                 SSDESGPEDASEEEEEGTETVSPDVARRAARDRMIFRRLSRATAGLGRICL
FT                 GQIPPSGKPKEWAIWRRGRSLSANGRPGGGEEAAVAAGSAAGAAAAAAGAA
FT                 AAGHTPQHTAAGWPRAEEAAEEARMREARPSSGAPTAVEPARSEGQVGETR
FT                 RGDGRSRGAEATTEEEREAQEGLEKGPWEWPTPPETSRDTAPPPKRAADFV
FT                 PGVASPTGEADAAETAVGGRGTGGSRAKHAGRQKTRGCRRRMARGGSLAAA
FT                 RVSRGTRSRVSTPRHVRGIRGIMVMVSL"
XX
SQ   Sequence 6048 BP; 1646 A; 1502 C; 1964 G; 933 T; 3 other;
     taagaaatca ggtcgttaca tctggcgccc atgagtgatt gccctgacca agagaacaaa        60
     agatcaaaga tgggaaagtc ctggatttat aatctcagga aggaggactt cgccgaggtg       120
     agcaatgttc tgggaataga actcgagggc tcggtagagg cgatgaggaa gaccctggca       180
     gagacggttg accgcatagc agaagacccg gtcgtggcag gcagcgagaa ggcagccgcg       240
     agaggaaaga aagcgtacgg ccacatccgc aggactacgc caaggtggcc aagcaagtcc       300
     gagagtggaa ctttcggtat gacggcaacg acaagccact ggagttcctg gagcaggtgg       360
     agtggtcagc cgtgacatat ggtctggata taaaccagat cccacgagca atgccggagc       420
     tgctgcaggg cagagcccta aagtggttca tagccaacaa ccggcagtgg gacaactggg       480
     gagacttcat attcagcttc caaggatatt tcctccctcg aggctacatg gagaagctag       540
     cggaccaggt caggcagcgg aggcagacat acggggaaaa atttaaggat tacatggtgg       600
     acatgcagac gatgatgcgg cccctgggta tgtctgccaa agaagtcctg aacaggataa       660
     aggagaacag cacgccggcc ctccgaatgt ttatccggcc gtacgagtgt cggcacctgg       720
     acaccctgat ggcgctggca gacgagttcg aggagctgga ggagcaacgg gagaagtttg       780
     aaatggaaaa ccactcccag aggacacaga accgcccagt gccaaggcca agggcagagc       840
     agggtgcggt gtgtaggcgg tgccaggagg acacggaggc gccacggagg catacgccgc       900
     aggaacacgg accaccagcc gatcgcagtg gatttataca gaatccggcc aacgcttgtc       960
     gcagatgcgg gggcgcggac cattggacga aggagtgccg gaaccggcga ctcacgttct      1020
     gctggcgatg cggaaagata ggcgtccgaa cggtggagtg ctgttcggga aacgcgcaac      1080
     gatcccagcc tccgaggggc ggccagggat cgtaaggtgc tgcctctcaa aaataatggg      1140
     cgacctgaag gcggaagaaa tgcaactgtc cgccacagtg ctcataggtg acgcgaacgt      1200
     taaggccacg gtggacaccg gcgcgacagc gagtttcatc agcaaagagc tggcggacag      1260
     gctgcaggcg gcaggaaagg ttggacccac aaagaggcaa gtacggatgg cggacggtag      1320
     atgcggagac gtaaaatcgc agctagaaat tcaaatcgga cttggcacaa gaaaagtgtc      1380
     aatggagctg ctgatcctcc caggattgat cgacgmactg gtgctaggat ggaacttcct      1440
     caccaaaatc ggagccgagg tgaaatgcgc aggtcacaga gtgatgatac cggcgaggga      1500
     cagacaccga ggctggctgg aggaaaaact gtcggtagca gtcgtggaag ccgcgaaggg      1560
     attttcggag aaggatgtgg accagttttt aaagaccgag ttggagagcc tggaaaatct      1620
     gcaaggcacg tcaaacgtgg cagtacacag gatcaccatg aaggacgatc agccggtcaa      1680
     acagcggtac tatccgaaga atccaaaaat gcagggcgag atcaacgcca aagtagacga      1740
     gctacttgaa aagggctgca tcgaaccgtc aaggagtccg tacagctcac caatagtcat      1800
     ggtgaggaag aagaccggga aatggaggct ctgtgtggat ttcaggcaga tcaacgcaaa      1860
     gtccgtgaag gatgcatatc caatgccgat gatcaactac atcctggacc aactccgaga      1920
     agctaaatat attagcagcc tcgacttaaa ggacgggtac tggcagatac cgttggaggc      1980
     agccagcagg cagtacaccg cattcacagt gccagggaaa ggcctgtttc aatggaaagt      2040
     tatgcctttt ggtttacact cggcatcagc aacattccag cgggcgttgg accaggtaat      2100
     tggacccgaa atgatgccgc acgctttcgc gtatcaggat gatataatcg tcatcggacg      2160
     gacgctagaa gagcacatgc ggaacctaaa ggaagtattc agaagactgc gagcggcgaa      2220
     cctgaaagta aacgctgata agtgtaaatt cttcaggaag gaacttcaat acttagggca      2280
     tcgcattaca gaccaaggca tcgggacgga tccggaaaag gtatcagcga tagcattgct      2340
     aaaaccaccg gcaactgcca aagaactgcg gcagtatttg ggagtggcgt cgtggtacag      2400
     gcgttttgtg ccagattttg ccacgctagt gcatccgctg aacgcccttc tccgaaaggg      2460
     tgtcaaatgg gaatggaccg acgaccacca gcaggccttt gaagctgtca aggcaagatt      2520
     ggtcgccgac ccaattttgg catgcccgga ttttacaaag ccgtttgtgc tgcagaccga      2580
     tgccagcgat tatgggctgg gcgccattct cactcaaaat tccgaccagg gtgagcgggt      2640
     gatctcctat tccagccgga ccctaaacgg gtcggaaaag aattactccg ccactgaaaa      2700
     ggaatgttta gcaatcgtgt gggccataag gaaattaaag ccatacctgg agggatacca      2760
     cttcaaagtg ataacagatc acatggccct gaagtggttg aatagcatcg agagcccaac      2820
     cggaagaatc gcacggtggg cactggagct ccagcaatac gacttcgaaa tcacatacag      2880
     gaaaggccag ctgaatattg tggcggacgc actgtcgcgg cagcccttac ctgaaacctg      2940
     ccgaaggttg aaaacgaagt cacctggtca gccagcaaaa caagccgaat gtagctggat      3000
     aagggacata aggggcaaga tagcacagaa cccccaaaaa tatccggact atttagtgga      3060
     ggccgaccgg ctgtaccggc acattcctca cagagcaggc aacgaggatg tggtcgcatg      3120
     gaagctatgc gtaccaatcg ggtcaaggca gcgagtcatg gccgagaacc acgatatgcc      3180
     gacggccgga cacatgggca gccggaagac gatcgcgagg gtggcagcga ggtattattg      3240
     gccgggcatg caccgcgaca tgaggcgtag agcgggcccg cgcctgggcc gcttcctcgg      3300
     tcgaaacacg ggaactcgat gctactagtg ctcgtagatc ggttctcgaa gtggacggaa      3360
     atagtgccaa tgcgtagggc taccacggag acgctggaaa aggcaatccg ggaaaggatt      3420
     gtctcaaggt acggcgtgcc gaaggtcttg atcaccgata acggggtgca attcacgagc      3480
     agggcgttca agcggttctt gacagagttg ggagtgcggc accagttcac agccccgtac      3540
     acaccacaag aaaatcccac ggagagggcc aatagaactg taaaaacaat gatcgcccag      3600
     tttgccggac aagaccagag aacgtgggat gagaaatggc cagaattgca gctggccgtg      3660
     aacactagtg tagccgagtc cacagggtat tcgccggcat tcgtcacgca gggtagagag      3720
     cccaggttac cgagcgcgtt gtttgatgaa gaaaccaccg gcacaggaag ggaaacccag      3780
     accccgtcgg aaaatgcgaa aaaaataaac gaaatcttcg agctggtcag acggaacatg      3840
     gagaaggcgg cgcaggatca ggcgcgccac tacaatctcc ggaggcgccc ttggaaacca      3900
     cagatcggag acacggtatg ggccaaggag caccatctat ccaaggcggc agaaggattc      3960
     gcggcgaaac tggcccccag atacgagggg ccgtttaaaa taattaattt cgactctccg      4020
     gttatttgca acctgcggca cgaacacacg ggcaaagaaa gaaaaacaca cataagccag      4080
     ttaaaaccgc aaagcaaaga ggggcagtct caacaaatcc ggcgtatcgg aggagcactg      4140
     taccctaacc gaagaaaggg ggaggacgat acacacaggc acacacatca ggagcgcgag      4200
     agcgggacag ggagggttta aaaagccgta ggcaccgtta ccggctaaac acacacatgc      4260
     acgggttgcg taggaggcgt gtacacggag ggcaccgtta cttttaaacg ttacacgggc      4320
     acagagcgga gagcgagtcc cgttaccggt acacgtctcc gcgaataacg gaaccgagga      4380
     tacgcggaag aaccgaggtt tcgtcagcga cggcgctgca cggtkcaggt ctttccaaaa      4440
     aagataatca wcatgagcgc acgcaggagc agcacccagc agcgagtgga gcacgaggtg      4500
     agggaggagc gcgccaggga acagccagtg gcgaagtgga gacgggactc cgattccgtc      4560
     ctccagcttc tggcgtcccc cctggtgtcg cgatccccgt caccggtcag cgaggctgac      4620
     gaggagtcca ccggggagat ctcggacgtg gagctgccgt ccgaggagga ggacgcaggc      4680
     ccgaacgcga cggagatcgc agaggtcgtc gccatctcct ccgatgagag tgggccggag      4740
     gacgcgagtg aggaggagga ggaggggacg gagaccgtca gtcccgacgt ggcgcggcga      4800
     gctgcgaggg accggatgat cttccgccgg ttgagcaggg cgacggcagg gctcgggagg      4860
     atctgcctag ggcagatacc accgtcgggc aagcccaagg agtgggccat ctggaggcgc      4920
     gggcggtcac tgtccgccaa tgggaggccc ggcgggggcg aggaggcagc agtcgccgca      4980
     ggcagcgccg caggggcagc cgcagccgcc gcaggagcag ccgcagcggg ccacacgccg      5040
     cagcacaccg ccgcggggtg gccccgcgcc gaggaggcag cagaggaggc caggatgcga      5100
     gaggcccggc catcgagtgg cgcgcccacc gccgttgaac ccgcgcgatc cgagggccaa      5160
     gtcggcgaaa cgcgtcgcgg agacggccga tcgcgagggg cggaggcgac gaccgaggag      5220
     gaacgcgagg cccaggaggg gctggagaag gggccatggg agtggccaac accgccggag      5280
     acgtcgcggg acacggcgcc acccccgaag cgggcggcag acttcgtgcc cggagtcgcg      5340
     agccccaccg gcgaggccga cgctgcggag acagcagtcg gagggcgcgg aaccggggga      5400
     tcgcgggcca agcacgcggg ccggcagaaa acacgaggct gccgcaggcg tatggcgagg      5460
     ggggggtcac ttgctgccgc aagggtctcc cggggcacgc ggtccagggt cagcaccccg      5520
     agacatgtca ggggcatcag gggcatcatg gtcatggtgt cgctgtaaag aaaaaagtcg      5580
     ttagttaaag gaaaactaca agcatcaagt ttactcacca gtttttccaa aacaacgagg      5640
     ccgtgaggaa attagggacg ggggcgccag gcgataggcg gtcgatcgat agttgcgatc      5700
     gatgggtaca aaaaatggat ttctcaagaa acggtcacac ggaggcaact taagacaacg      5760
     gaaacgataa cggcaacaac gatggcaatg ctggacccac tatcgataag tgcgatcgag      5820
     acgtggtcag tagagtggcc agacgacggg aatcggaatg gtgatttcaa acacggggaa      5880
     atgtctgggc gggaaattca aattctacgg gaatggggaa agttgaagtc ttttggggaa      5940
     ctgtatgggg tcacgaggag aacgagtttg gcggggaatt tgaatgaacg aacaacaggg      6000
     gcggggagat caccactttc ataacatttc cgaagaaagg gggaaatg                   6048
//
ID   Gypsy-6_DEl-LTR repbase;    DNA;    INV; 1036 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DEl_;
KW   Gypsy-6_DEl-I; Gypsy-6_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1036
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 521-521 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1036 BP; 310 A; 257 C; 314 G; 155 T; 0 other;
     tgaggagtct taaaactccc cacaaattcc gatgcaggag agctgcatag caacagcgaa        60
     ggaggcgaga atgccggagg agtcaagggc aacaaggtca aacggtaaac aacggacctt       120
     ggacccgggc aaagcggaga caccgtgaat taacggtacc acgctggaca ttggaccctc       180
     acacggcaag ggcaacaggg tcgaacggta aattggcgga cttcggaccc gcacaaagag       240
     gacgcaccgt gaactaacgg tgcggcagtg gaccttggac ccgatcacgc gagctggaaa       300
     agggaaataa cgggaccatc acaggctata aaaggcggcg caagcgcagc acacggggga       360
     agtaatagtg cgagaatcag agcgagtgcg tgtacgcgag accagtagca agttaatcaa       420
     gtgccgagta ccaggatcaa gatcgcaaag tcgagacgcc gaacgactga gagtctacaa       480
     ggctgaggct tcaacgctga gatccaacgg gtgctaggtc gtggttaaat cgagctcagg       540
     gagtccttgc gtggagtctg cgataaaggt ggctgggcga agaggtcgaa cctagttcta       600
     cctgctaggc gatacacctt gccgacacaa tccggaccaa cttagggagc ctgcgataaa       660
     ggtggctagg cgaaaaggca gaacctcgtt ctacctgcta ggcgaaacac cttgccggtc       720
     ccgacagtga ggttcgcata atatccagag tctcgaagga gccgtcacga gtcagatacc       780
     agcaagcagt cgacgacgag gagcgacgcc gcgaaggaca gcgacgagga gcgacgccgc       840
     agaggacgac gacgaggagc agcagcagct gaagagccgc gaggcttgta caaggagacg       900
     aataaagaca gttacgatcc caacagaact cttgcgttat tcattggtca aaggcaatca       960
     cccaatataa atttggtgga acgaacccat aacctctctg agctagccgc ccgttaacgt      1020
     agcgagcgag aataca                                                      1036
//
ID   Gypsy-6_DEu-I repbase;    DNA;    INV; 6794 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   03-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DEu_;
KW   Gypsy-6_DEu-LTR; Gypsy-6_DEu-I.
XX
NM   Gypsy-6_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6794
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 859-859 (2012).
XX
RN   [2]
RP   1-6794
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   [2]: 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           808..2163
FT                 /product="Gypsy-6_DEu-I_1p"
FT                 /translation="MYRNHKETESDDEVIAEYRKLLDTKIQRQKTHQEQET
FT                 ETSYQPSTSRGAFIRPSIFNTTNPQPLTMQPEQIASMEAAITSALQKQQEL
FT                 FDKKLAAVIGELKSLKTKDSTPQIQTYQEIELKPEIQCNEPLDMVKSVPEF
FT                 DGSQENYISWRQAATAAYKVFEPYDGSSRHYQAVGILKNKVRGSAAAVLSS
FT                 FNTVFNFHAILARLDFTYADKTPTHVIKQELSLSRQGELPLLKFYDEIERK
FT                 LTLLTNKTIMTHDATAAAILNEQHRNDALHAFISGLKKSLKIAVFPAQPRD
FT                 LPSALALAQEAESSNERSAFAATFARHNEEKTHKQNNQRQAGWKNPQTQYE
FT                 NTGAVKKTPHFIRTQKGANNQSGSFRQRPHTNSGTYQGQPAPEPMEVDPSS
FT                 RRLFTRPTAWQKGQSTKQKINFMPEEKSDNEDYDTVAQACATEIEDDLDEE
FT                 DSCNFLD"
FT   CDS           2154..5243
FT                 /product="Gypsy-6_DEu-I_2p"
FT                 /translation="FFRLKSLLPYITRTVAGREIKLLLDTGTSKNYITPIP
FT                 GLKGIVAAEKPFTVKSIHGFTKIDKKCLVSVFKIKTPFFILNNLKEFDGII
FT                 GLDLLKQANAKLDFTGNIIHTNNGDEKIRFTRAENVNFIKINDEDVPVAIR
FT                 ATFDKMILKNHKAFADPDEALPFNINTIATIKTDGEPVYSKSYPHPMGVTE
FT                 FVNAEVKQLLADGVIRPSRSPYNNPTWVVDKKGIDQNGVRKKRLVIDFRKL
FT                 NQKTVDDRYPIPTISTILSNMGESQYFTTLDLKSGFHQIELAEKDREKTAF
FT                 SVNNGKYEFCRMPFGLKNAPSIFQRAIDDVLREGISKICYVYVDDVIIFSK
FT                 TKEDHVRDVDWVLAKLLEAGMRVSQEKSKFFKKSVEYLGFIVTQGGLQTSP
FT                 EKVKAIKEFPPPKTLFDLRSFLGLASYYRCFIKNFATIARPLTSILKGENG
FT                 KVSKYQSRKIDINMTKEQKETFDRLREILASEDVLLSYPDFKRPFDLTTDA
FT                 SGFGLGAVLSQDGRPITMISRALRDSEKNYATNERELLAIVWALKNLRNYL
FT                 YGAKGLQIFTDHQPLTFAVSEKNPNAKLKRWKGIIDDHGAKLVYKPGKENF
FT                 VADALSRQNINTLEDGQQSDLATIHSEESLTYTIETTDNPVNCFRNQIIIE
FT                 DGNSFSVDTFILFKSKVRHIIKTPNRENLMEALQDVVNAEVVNAIHCSLPT
FT                 LAFIQHRLVESFPSTSFKHTKNFVQDITDLTEQKEIVITEHNRAHRAAQEN
FT                 VKQILRDYFFPKMLRLATEITSNCKTCSMAKYKRHPSKQRVAETPIPSFVG
FT                 EILHIDIFSTDGTLFLTCVDKFSKFAIVQTIASRAIVDIKAPLLQIINFFP
FT                 KTKTIYCDNERSLNSETIKTILLNHFNITISNAPPLHSTSNGQVERFHSTL
FT                 AEIARCLKLGCKLNDTIELILLATNKYNNSIHSVTNKKPSEIVHTKPMEFD
FT                 REISKKIQQAQEKTLDHVNKNRTYKDYRVGEKVFLKANKRLGNKLSPLCSE
FT                 ETIEADLGTTVLIRGRVVHKDNLR"
FT   CDS           5209..6792
FT                 /product="Gypsy-6_DEu-I_3p"
FT                 /translation="LEGGWSIKTTYANHPSLSSRQLLHLFTFLLFYIFYIF
FT                 YIHLYFSRLGKYIIIWALTAARTDATVKLNDYTNADYIPIEDGDIVVWESF
FT                 GYLQHATNVTTYEDFADQTEELTRTFTDDHRLPVIATDIRHIRKLVATLKI
FT                 HHRAARSINLIGTALKVVAGTPDFNDWEQVKFNQEQLMRADEGQTELNIKF
FT                 QERLNELSSAMNQIQKFETNKETHLLEIILAKNRIVITDLENILMGLTLAK
FT                 LNIVSPAILDSSDIGEFKDKQPINISLIEILEVSSISVFQNSDIIHFLIKF
FT                 PNPKLVCKKITVYPVQHHNKILDFENGNLVAECPGRNLNIGYCKTTVGATF
FT                 CRELQNNTCAQQLVSGVIAHCSTLPGHLDAITVVDHGTLIVNEANMTITDN
FT                 QGRDQKISGTYLVTYSDRISLNGTWFINQLGDSMKKPAVSAMTMVNITTHQ
FT                 ARLSLPFLHELSLRNLHHIGTLREELSLGSFVSYSLALLGFLLLCSTLWLS
FT                 YHHLKNKVHANSRINDDLEPSGHRDGDHLKGG"
XX
SQ   Sequence 6794 BP; 2437 A; 1546 C; 1286 G; 1524 T; 1 other;
     gacgcccaac gtaaccgact cacgcgagac gaagtgttaa tgcagttaca gaagtaattg        60
     caatcggtag tgaaaattta attaaaaaat taattaacaa taaaaaaaga gaacacacaa       120
     aaagtgcagt gctcaaaatt ggctagaaaa atacgccaag gaatttttct tacaaaaaag       180
     tgaacaggaa aaaattcccc actcaagtga gaattaatta aaaattaatt aataacgaaa       240
     aaagagaaca cgcaaaaagt gcagtgaaaa gcagggcagc gacaacagcg gcagcgacaa       300
     cagcggcagc gacaacagcg gcagcgacag cagcggcggc gacaacagcg gcggcgacga       360
     cggcggcggc aacgacgacg gcagcagcaa cgacggcggc agcgacggcc acaacaacaa       420
     ccgaaccata cgaaatgtga gtaggctttt tgtctgaatt atcgccaaat aaataaaata       480
     aatccgcgac acctaactgt gggaacatta agaattccct ctctttgcaa tttcgagtaa       540
     aatttatctt tctcgaaaat aaaaacttac gaattaaatt aaaaaaattt tatttctctc       600
     aaaaataaaa acctttaaaa aaataaattt tatttaaaca atatttaaat aaagtaaaaa       660
     gctctacttg aatttttctg ggtgttccaa agaaaacata ttaaaacata atatatatac       720
     ataatatatt tatttagtag atttcaaaat aaaatttccg actgcccatg gactaatttt       780
     tttttaaaaa aattaagtaa cgaccccatg taccgaaacc ataaagaaac cgagtcagac       840
     gacgaggtta ttgcagagta taggaaactt ttagacacaa aaatacaacg acagaaaact       900
     caccaagaac aagaaactga gacttcttac cagccatcca ctagcagggg ggcatttatt       960
     cgacctagta tttttaacac tacaaaccca cagccgctta caatgcagcc agaacagatt      1020
     gcaagcatgg aggccgctat aactagcgca ctccaaaaac aacaggaact attcgataaa      1080
     aaattagctg cagttatagg ggagttaaaa tcactcaaaa caaaagatag caccccacaa      1140
     attcaaacwt atcaggaaat cgaattgaaa cctgagatac agtgcaacga accccttgat      1200
     atggtcaagt cggttccaga atttgacggt agccaggaaa attatatctc ctggaggcaa      1260
     gctgccaccg cagcctataa agtatttgag ccatacgacg gtagtagtcg acactaccaa      1320
     gccgtcggta ttctaaaaaa taaagtgaga ggatcagcag ccgcagtgct atcctccttc      1380
     aatacggtat tcaattttca tgccatactg gcacgcctag atttcacgta cgcggacaaa      1440
     actccgacgc acgttattaa acaggaatta agtctgtcaa gacagggaga gctaccactg      1500
     ctcaaattct atgacgaaat agaacggaag ctaacgcttc taacaaacaa aacaataatg      1560
     acccatgacg caaccgcagc tgccatctta aatgagcagc acagaaatga cgctttacat      1620
     gcgttcatat ctgggttaaa aaaatcccta aaaatagccg tttttccggc acaacctcgg      1680
     gacttgccat cagctttagc attagcacag gaagctgaat cgagcaacga aagaagtgct      1740
     tttgcggcca ctttcgcccg acataatgag gagaaaacac ataagcagaa caaccagcga      1800
     caagcaggtt ggaaaaatcc ccagacccag tatgaaaata cgggagcggt taagaaaact      1860
     cctcacttta ttagaaccca aaaaggggcc aacaatcaga gtggttcctt tagacagaga      1920
     ccccacacaa actcgggaac ttatcagggt caaccagcac cagagccaat ggaggtcgac      1980
     ccctcctcta gaaggctctt tactcggccc acagcatggc aaaaagggca gtcaactaaa      2040
     caaaaaataa acttcatgcc agaagagaaa tctgacaacg aagattatga caccgttgct      2100
     caagcctgtg ccactgaaat agaagacgat cttgatgaag aagattcgtg taatttttta      2160
     gattaaaatc cctgctcccc tacattacac gtacggtagc aggaagagaa ataaaactac      2220
     ttttagacac aggcacctca aaaaattaca ttactccaat cccggggctg aaaggcatcg      2280
     tggcagcgga gaaacccttt acagtgaagt caatccatgg cttcaccaaa atagataaaa      2340
     agtgcctagt ttcggtgttt aaaataaaaa cacccttttt tattctaaat aaccttaaag      2400
     aattcgacgg tattatcggt ctcgacttgc ttaaacaagc gaatgcgaaa ctcgatttta      2460
     ctggaaacat tattcacaca aacaacggag atgaaaaaat ccgatttact agggcagaaa      2520
     acgtcaactt tattaaaatt aatgacgaag atgtccccgt ggcaattagg gccacctttg      2580
     ataaaatgat tcttaaaaat cataaagcct tcgctgaccc agacgaagca cttccattta      2640
     acattaacac tatagcaaca ataaaaactg atggggaacc ggtgtactcc aagtcgtacc      2700
     cacaccccat gggtgtaacc gaattcgtca atgcagaggt taaacaactt ctagcggacg      2760
     gcgtaatacg gccatccaga tccccatata acaaccctac gtgggttgta gataaaaaag      2820
     gcatagacca gaatggggtt aggaagaagc gattagttat cgacttcaga aaactaaacc      2880
     agaaaacagt agacgataga tatcctatcc ctacaatttc gacaatactg tcgaatatgg      2940
     gcgagtcaca gtatttcact acactcgacc tcaaatcagg cttccaccag atagagctgg      3000
     cggaaaagga cagggaaaaa acagccttct ccgtaaacaa tggcaaatac gaattttgca      3060
     gaatgccatt cggacttaaa aacgccccaa gcatcttcca aagggctatt gatgacgtcc      3120
     ttagagaggg aatctcaaaa atatgctacg tctacgtaga tgatgtgatc atattttcaa      3180
     aaacaaaaga ggaccacgtc agggacgtgg actgggtttt agccaaactc ttggaagcag      3240
     gtatgagagt atcccaagag aaatcgaagt tctttaaaaa gagcgtcgag tacctgggtt      3300
     ttatagtgac gcaaggggga ctccaaacct cacctgaaaa ggtaaaagct attaaggaat      3360
     ttcccccacc aaaaacactt tttgacctca gatcttttct ggggctagca agctactaca      3420
     ggtgcttcat taaaaacttc gcgactatcg caagacccct aacaagcatc ctaaagggag      3480
     aaaatgggaa ggttagtaaa tatcaatcga gaaagattga tatcaacatg accaaagaac      3540
     aaaaagaaac gttcgacaga ctgagagaaa tcttggcatc agaagacgtt ttgctctcat      3600
     atccagattt taagaggcca ttcgacttaa ctacggacgc atcaggcttc ggactagggg      3660
     cagttctatc tcaagatggc cgcccaatta caatgatatc acgcgcacta cgtgatagcg      3720
     aaaaaaacta cgcaaccaat gagcgagagc tccttgccat tgtgtgggct cttaaaaacc      3780
     tccggaatta cttatacgga gcaaaagggt tgcagatctt taccgatcat caaccactca      3840
     cctttgccgt ctcagaaaaa aatcccaatg caaagctgaa gcgttggaaa gggattattg      3900
     acgaccatgg tgcaaaactg gtttataaac caggaaaaga aaatttcgtg gcagacgcac      3960
     tatctcgcca gaacattaat accctagaag acggacaaca atcggactta gccactatcc      4020
     atagtgaaga gtccctaaca tacaccatcg agacaaccga caatccggta aactgcttcc      4080
     gaaaccaaat aataattgag gacggaaata gtttctcggt ggatacattc atcttgttta      4140
     aaagcaaagt cagacacata atcaaaaccc ccaaccggga aaatctgatg gaagcattac      4200
     aagatgttgt aaacgcagag gtagtaaacg cgatacattg ctcactacca actttagcgt      4260
     ttatccaaca ccgactagtg gagtccttcc ctagcacttc ttttaagcac acgaaaaact      4320
     tcgtacagga cataacggac ttaaccgaac agaaagaaat tgtcataacg gaacacaaca      4380
     gggctcaccg agcggcacag gaaaatgtaa aacaaatcct tagggactat ttcttcccaa      4440
     aaatgcttcg gttagcgaca gaaataacat caaactgcaa aacctgttcc atggcaaaat      4500
     acaaacgcca cccatcaaaa caaagggtcg cagaaactcc tataccttca ttcgttgggg      4560
     aaattctaca catcgatatt ttctcaacag atggaaccct tttccttaca tgcgttgaca      4620
     aattctcaaa attcgccata gtgcaaacca tcgcatcaag ggccatagta gatataaaag      4680
     cacctttact tcaaataata aatttctttc cgaaaaccaa aacaatctac tgcgataacg      4740
     aaagatcatt aaactccgag accattaaaa caatcctgtt aaatcatttc aatatcacca      4800
     tttccaacgc tccacctcta cacagcacat caaatggcca agtagagaga tttcatagca      4860
     ctctagctga aatagccaga tgcttgaaac ttggatgcaa actaaacgat accatagaac      4920
     taatcctctt agcaaccaac aaatacaata actcaatcca ctcagtaaca aacaaaaaac      4980
     catcagaaat agttcacaca aagcccatgg aattcgacag agaaattagt aaaaaaattc      5040
     aacaggcaca ggagaagacg ctggaccatg taaacaagaa taggacatat aaggactatc      5100
     gggtaggcga aaaagttttt ctaaaagcaa ataaaagact aggcaacaag ctctcaccgc      5160
     tatgttcaga ggaaacaatt gaagctgacc tggggacaac ggtcttaatt agagggaggg      5220
     tggtccataa agacaaccta cgctaatcac ccttcgctaa gctcccgaca acttttacac      5280
     ctttttacat ttttactttt ttatattttt tacatttttt atattcatct atatttttct      5340
     aggctaggaa aatacattat aatctgggca ttaacggctg ctaggacgga cgcgacggtg      5400
     aaactaaatg actacacgaa cgcggactac atccccatag aggacggtga cattgtagtt      5460
     tgggaatctt ttggatactt acaacatgca acgaacgtga cgacctacga ggacttcgcc      5520
     gaccagacag aagaactaac acgaacattc accgacgacc acagactacc ggttatagca      5580
     acggacatca gacatattcg caagttggta gctaccctaa aaatccatca tagggccgct      5640
     aggagtataa acttaatcgg aacagcctta aaagttgttg caggtacacc cgactttaat      5700
     gattgggaac aagtaaaatt caaccaagag caattaatga gagcagatga aggacaaaca      5760
     gaattaaata ttaaattcca agaacgtttg aacgaacttt cgagcgctat gaaccaaatt      5820
     caaaaattcg agacaaataa agaaacacac cttttggaaa tcatcctagc taaaaataga      5880
     atcgttatca ctgatttgga aaacattcta atgggcttaa ccctagcaaa attaaacatt      5940
     gtaagtccgg caattctaga tagctccgac attggcgaat ttaaagacaa acagcctatt      6000
     aacattagct taatagaaat tttagaagta tctagtataa gtgtttttca aaattccgat      6060
     atcattcatt ttctcattaa atttcctaac cctaagcttg tttgtaagaa gataacagtc      6120
     tatccggtcc agcaccacaa caagatccta gacttcgaaa acggaaacct agtcgctgag      6180
     tgcccgggac gaaacctcaa catcgggtac tgcaagacga cagttggcgc caccttctgc      6240
     agggagctcc aaaataacac ctgtgctcag caattggttt ctggagttat tgcacactgt      6300
     tccacgctcc caggtcacct ggatgcaata actgtggtag atcatggcac cctcatagta      6360
     aacgaggcca acatgaccat aaccgataac caaggacgag accaaaagat atctggaacg      6420
     tacctcgtaa cttattcaga cagaataagc ctaaacggaa cttggttcat aaatcagctg      6480
     ggagactcaa tgaaaaaacc cgctgtgtca gccatgacca tggtcaacat cacgacccac      6540
     caagctcggc tgagccttcc ctttctgcac gagttgagtc tgaggaacct ccaccacatt      6600
     gggaccctta gagaagaact ttccttgggt tccttcgtca gctactccct cgccctactc      6660
     ggcttcctcc tgctgtgctc aaccctttgg ctcagctacc accacctgaa gaacaaagtc      6720
     cacgccaact caagaattaa cgatgacctg gaaccatcgg gtcaccggga cggcgaccac      6780
     ttaaaaggag gaga                                                        6794
//
ID   Gypsy-6_DEu-LTR repbase;    DNA;    INV; 589 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.06, Created)
DT   03-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DEu_;
KW   Gypsy-6_DEu-LTR; Gypsy-6_DEu-I.
XX
NM   Gypsy-6_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-589
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 860-860 (2012).
XX
RN   [2]
RP   1-589
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-FEB-2022).
XX
DR   [2] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2]: consensus updated.
XX
SQ   Sequence 589 BP; 179 A; 147 C; 130 G; 132 T; 1 other;
     agttaacaca cccagttccc aaattgggaa actgccgagt tgcgggccac atccggtggc        60
     caacacacgg aatagggaaa ctgccgactt tgcactccgg ggacaatcac ccggagcccg       120
     gccagaagtg gtcaacatgc gcgacgaaga aaccgccgac tctgcactct gggggcaatc       180
     acccagagcc cgatcagaag tggccaacac gcgcattaaa gaaatcgttg actccgcact       240
     ctggagtcta tcccacggtt cccggccaga acactcgcgc agcgagtgat cgtaagcacc       300
     tggataaaat tgctgatccg gcactttggc gacagcgctg cgactggacg aagacttcta       360
     gctgcagccg gatcggatat ttagtttagt tttaaatcat actccgcagc catagctgtg       420
     taataaataa ttatatcaat tatatcacac tgtttatatt atcctttacc ttaacaggtt       480
     taggtgaaat aaataaaaga aaaataatta aaccaatctc ttataaatgg atccttgccc       540
     caacgggctt gagtgaaata atacaataaa ggtcggtact aaattaawt                   589
//
ID   Gypsy-6_DFi-I repbase;    DNA;    INV; 4646 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DFi_;
KW   Gypsy-6_DFi-LTR; Gypsy-6_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4646
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 899-899 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2089-2592] - Reverse transcriptase
CC   Positions [3691-4164] - Integrase core
CC   'CTTK' target site duplication
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           357..1655
FT                 /product="Gypsy-6_DFi-I_2p"
FT                 /translation="MPKIAELKVDELKFLLRLRNVSSSGTRAELIQRLIEV
FT                 EQSEDIEMPAPSGLSSQQQEQVMTQSAAISQLQNEMTELKEMMAQLISIQR
FT                 QSAAATVEVGHQQQQNREAEIEEIRNGSSPAVQDTNNIRQASVKEIANTLP
FT                 EFDPSDENAISVSQFIDRVNKVVDAYKWDDKFVLLAIYTRLKGPAKMWLDS
FT                 SPILHTTWNSFAEGIQEEFGASPDEAEVHFEMANATRRQKETVKEYCFRMS
FT                 ALGVRYQLSEAAIIRYARSGLQHRELQNSIAAINFATMKQLREAAESFFVN
FT                 RGRTTVGKREFVPKSSSNEQKQDSDVRPTRQKDAQRCYNCGESGHFANHCP
FT                 KENKKTRCSKCNKFHDPKEACRMANVMRMEVGNHDKLFTKEIRIHSHKYNA
FT                 FIDTGSQVSIIRRSVARQIDGTPPVYYENKRNMRRIMFA"
FT   CDS           1306..4647
FT                 /product="Gypsy-6_DFi-I_1p"
FT                 /translation="MLDQRDKRMPRDATIAENRDTSPTIAQRRIKRRAVVN
FT                 AISFTTQKKLVEWQTLCVWKLEITTNFSRRKSGFTRTSTTHSSTQVVKLAL
FT                 FAGQLLAKSMGRHQCTMKIKGICGGSCLLKEMIITDMDVDGKIIKAKLYVT
FT                 DDDMLQEDLLLGQDVIISSQLILGVEHGSSEVKRTVSKPTTIVSDSITEKL
FT                 LANFQNNNERDKMRNLLEEYADVFSSGLQGIGKTSIVQANIIVNSSQAVSQ
FT                 APYRVSEPKKEIVNKMVNELLEKDIICLSNSEYASPVVLIKKPNGSDRMCV
FT                 DYRRLNKLIQKENFPVPNIEERLQEAKRFKYFSSLDLNSGYYQIEVAPQSR
FT                 KYTAFITTDGLYEFKRLPFGLKNAPAVFNRLMAELQKRVKSGDMIHYMDDI
FT                 LIGSQTFDEMYEKLNRVLNVLKECGLTLNQDKCELFKQSITFLGHQIHAEG
FT                 ISPGEIKTNAIKMFPKPANVTDVRKFLGLTGYFRKFVAGYAITSEPLRMLL
FT                 RKEQKFTWETPQQEAFDELKRCLISNPVITSYRLNAEHELHTDASSIGLAG
FT                 VLLQREKDQLKPIAYYSRATSKAEKNYHSYELEALAVVESLERFKYYIYGK
FT                 QIQVVTDCNALKTSMEKRELIPRIARWWLRIQEFDINIVHRAGTQMYHVDA
FT                 LSRAPFEDAREMDTACLKILKTIIDESDWLFSIQLQDEKIQKIVAEMKLKK
FT                 TTETEEYVIEQDRLFRKYNNKLLWVVPKQLRFHILHECHDKAGHMSTDKTI
FT                 ARIQNLFWFPRMRNFVKSYLKSCVGCAVYKVPGGRQEGQYHYDDINPIPFS
FT                 TIHMDHLGPFPKSSRRNEHILVIVDAFTKFTIIRAVKSTATKHVIDILQDV
FT                 TSYLGMPSRIITDRGTAFTSKDFEKYCKANNVKHILNAVRTPRANGHAERT
FT                 NRVILSMLLPLNEKEKRWDENMRTIQWSINTMINSTTKCSPFQLLYGYEPR
FT                 DILKNTLTNAIQGQNQKMLTDAELEKLRADAANTINDHRAAAKKRYDARHS
FT                 KPTMYSPGDLVLVENEPFSTGTSRKLEPRYKGPFIVSKVLPNDRYLVEDIP
FT                 HAQRKQRHYKSVYSSDKMKRWCQLPPDDPDEDDDFEDDPGPHPESCEDAAI
FT                 CQERPT"
XX
SQ   Sequence 4646 BP; 1571 A; 908 C; 1071 G; 1093 T; 3 other;
     gttcagaagt gggataataa tgatattttt gaggttggat aaacgtggat cagagaagtg        60
     ctaagaaaat tctagaaaaa gctactagaa tcgtcggcgt gggaagtttt caatgggatg       120
     tgttcccaaa ggtctatgtg acaaaggata ttggaaatta cggatgtgtt ccttttcaac       180
     gcggcagacg gattcaaagc agaggaatca ggaatcttag tgaacctgag ttctaagaag       240
     tttcgagaag cagcatcagg agtctcagtg aacctggaaa tcgtgcgtgc acatgcaagt       300
     tgtggtcgag gtcaattgca agaaatagtt gaaagaagac agtgataatt ttgaaaatgc       360
     caaaaattgc agagcttaaa gtagatgagc taaagttctt gctacgatta aggaatgtat       420
     caagttcagg cactagagct gagttaattc aaagacttat tgaagttgag cagtcggagg       480
     acatagagat gccagcaccg agtgggctaa gtagccaaca acaagaacaa gtgatgacgc       540
     aatcagcagc aatttcacaa ttgcagaatg agatgacgga gttgaaagaa atgatggctc       600
     agttaattag cattcagagg caatctgcag cagcaacagt tgaagtgggg catcagcagc       660
     agcaaaacag agaagcagaa atcgaagaga tcaggaacgg gagcagccct gcggtacagg       720
     ataccaacaa tattaggcaa gcatcggtta aagagattgc taacacctta ccagagtttg       780
     accccagtga cgaaaatgcc atatcggtta gccagttcat cgatcgtgtc aataaagtgg       840
     ttgacgctta taagtgggac gacaaattcg tattgctcgc aatttataca cggctaaaag       900
     gtccagccaa aatgtggctt gattcatcac caattttgca caccacatgg aatagttttg       960
     cagaaggtat ccaagaagaa ttcggagcaa gcccagacga agctgaagtg cattttgaga      1020
     tggccaatgc aaccagacga cagaaggaga cggtcaagga atactgtttc aggatgtcag      1080
     cccttggagt gcgataccag cttagtgaag cagcgatcat cagatatgcc agatcaggtc      1140
     tacagcaccg agaactgcaa aacagtattg cagctattaa tttcgcaact atgaagcaac      1200
     ttcgagaggc agcagaatcg ttttttgtaa acagaggccg aacaacagta ggtaaaagag      1260
     agtttgtacc aaaaagcagc agcaacgagc agaagcagga cagcgatgtt agaccaacga      1320
     gacaaaagga tgcccagaga tgctacaatt gcggagaatc gggacacttc gccaaccatt      1380
     gcccaaagga gaataaaaag acgcgctgta gtaaatgcaa taagtttcac gacccaaaag      1440
     aagcttgtcg aatggcaaac gttatgcgta tggaagttgg aaatcacgac aaacttttca      1500
     cgaaggaaat caggattcac tcgcacaagt acaacgcatt catcgacaca ggtagtcaag      1560
     ttagcattat tcgcaggtca gttgctcgcc aaatcgatgg gacgccacca gtgtactatg      1620
     aaaataaaag gaatatgcgg aggatcatgt ttgcttaagg aaatgatcat tacggacatg      1680
     gacgtcgatg gaaaaatcat caaggcaaaa ttatatgtaa cggacgacga tatgttgcag      1740
     gaagatcttc tattaggaca ggatgtcatt atcagttcac aactcattct aggtgttgag      1800
     catggcagca gcgaagttaa gcgaacagtc tcgaagccga caacaattgt aagtgacagc      1860
     ataaccgaaa aacttttggc taattttcag aacaacaacg agcgagacaa aatgagaaat      1920
     ctgctggagg agtacgccga tgtcttttcg tcaggattgc aaggaatagg aaaaacgagc      1980
     atagttcaag ccaatatcat cgttaatagc agtcaagctg tatctcaagc cccgtacaga      2040
     gtttccgagc cgaagaagga gattgtcaac aaaatggtca acgagctttt ggagaaggat      2100
     attatttgtt tatcaaattc cgaatatgcc agcccggtag tacttatcaa gaagccgaac      2160
     ggtagtgatc gtatgtgcgt cgattaccgc cgccttaata agctcattca gaaggaaaat      2220
     ttcccagtac ccaatatcga agagcgttta caagaggcaa aaagatttaa atacttttct      2280
     tccctagatc tcaatagcgg atattaccag attgaagttg caccccaaag cagaaagtac      2340
     acagcattta taactacaga tggattatac gaattcaagc gactcccttt cggattgaag      2400
     aacgccccag ctgtattcaa tcgactcatg gcagagttgc agaagagagt gaaaagcggc      2460
     gacatgatac actacatgga cgacattctt attggtagcc aaacatttga cgagatgtat      2520
     gagaagctga accgagtcct caatgttttg aaagaatgtg gattaacgct aaaccaagat      2580
     aagtgtgaat tgtttaagca gtcgataaca tttcttggtc accagattca tgcagaaggc      2640
     atcagcccag gagagattaa gacaaacgcc attaaaatgt ttccgaaacc cgcaaatgtt      2700
     accgatgtga gaaagttttt aggtcttacc ggttattttc gtaaatttgt tgctggatat      2760
     gccataacat ctgaaccatt gcgtatgcta ttgcgaaaag aacagaaatt cacatgggaa      2820
     acaccgcaac aggaagcttt tgacgaatta aagagatgcc taatatcaaa tccagttata      2880
     acmagttatc gcttaaatgc cgagcatgaa ctacacacag atgctagttc cattggattg      2940
     gccggagtat tgctacaacg tgaaaaggat cagcttaaac caatcgctta ctatagtcga      3000
     gctacttcta aagcggagaa gaactaccac agttacgagt tagaggcgct agcagttgtc      3060
     gagtcgttgg agagattcaa atactatatc tatggcaaac agatacaagt tgttactgat      3120
     tgtaatgcac taaaaacatc gatggaaaaa cgagagctga tacccaggat tgcaagatgg      3180
     tggttgcgaa ttcaagaatt tgacataaat attgttcacc gagctggaac acaaatgtac      3240
     cacgtagacg cactaagtcg agctccattc gaggatgctc gcgaaatgga cacggcatgc      3300
     cttaagattt taaaaactat tattgacgaa tctgattggt tattttctat acaattacag      3360
     gacgagaaaa ttcagaaaat tgttgcagag atgaaattga agaagacgac ggagacagag      3420
     gagtacgtta tcgagcaaga tcgtttgttt cgaaagtata acaacaaatt gttatgggtt      3480
     gtaccgaagc agttaaggtt ccatattcta catgaatgtc atgataaggc cggtcacatg      3540
     agcacagaca aaactattgc tcgcattcaa aatttgtttt ggtttccccg aatgcgcaac      3600
     tttgtwaaga gttacctcaa atcatgtgtt ggatgcgcag tatataaggt accaggtgga      3660
     cgtcaagaag gtcagtacca ttacgatgac atcaatccaa tccctttttc taccatccac      3720
     atggatcatt tgggaccctt tccaaagagt tccaggcgaa atgagcacat tttagtaatt      3780
     gtcgatgctt tcaccaagtt tactatcatt cgagcagtta agagtacagc aaccaaacac      3840
     gtcattgata ttctacaaga tgtaaccagc tacttaggaa tgccmagcag aatcatcacc      3900
     gatcgtggca cagcatttac ttcaaaagat ttcgaaaaat actgcaaggc aaataatgta      3960
     aagcacatac tcaatgctgt aaggacgcct agagcaaatg gacatgcaga gcgaacaaat      4020
     cgagttattc tttcaatgtt attgccctta aatgaaaaag aaaaacgttg ggatgaaaac      4080
     atgcgtacaa tccagtggag tattaacacc atgataaaca gcactactaa atgttcccca      4140
     tttcagcttt tgtatggtta cgagccccga gacattctga agaacacatt gacaaatgca      4200
     attcaaggcc agaaccagaa gatgttaacg gatgcagaat tggaaaagct aagagcagat      4260
     gcagcgaaca ccatcaacga ccatcgagcg gctgctaaga aacgttacga tgccagacat      4320
     tctaagccaa caatgtatag ccctggagac cttgttttgg tcgagaatga accgtttagc      4380
     acaggaacat cgcgcaagtt ggagcctcgt tataaaggtc cttttattgt cagtaaggta      4440
     ctgccaaacg acagatatct ggtggaagat atcccacatg cccagaggaa gcagagacac      4500
     tacaagtcgg tatactcgtc cgacaaaatg aagcgctggt gccaactccc tcccgatgac      4560
     ccagatgaag atgacgattt tgaagacgac ccaggacccc atcccgaatc ttgcgaggac      4620
     gctgcgattt gtcaggaaag gccgac                                           4646
//
ID   Gypsy-6_DFi-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DFi_;
KW   Gypsy-6_DFi-I; Gypsy-6_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-235
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 900-900 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 235 BP; 94 A; 44 C; 37 G; 60 T; 0 other;
     tgtgaacagc cattcatatt gaaccgtttc acaacacttt tttgtagcat ttaagaacac        60
     tgtttatatg tataagataa gtcgaagtga taagagaaag gcaagcagaa gaacgagaag       120
     ctaagcaagc acagaaagac gcataagcaa aagtgtacat attttatttt atccacctca       180
     attattatta aataaacgca ccactcggaa aagcataaaa accatcctct tcaca            235
//
ID   Gypsy-6_DGri-I repbase;    DNA;    INV; 7739 BP.
XX
AC   .
XX
DT   29-SEP-2011 (Rel. 17.07, Created)
DT   29-SEP-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DGri_;
KW   Gypsy-6_DGri-LTR; Gypsy-6_DGri-I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7739
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1299-1299 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3312-3815] - Reverse transcriptase
CC   Positions [5025-5354] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           939..2639
FT                 /product="Gypsy-6_DGri-I_1p"
FT                 /translation="MVLSHSTEDLTRISNTGKHCCICSEIIVFQGQLLATS
FT                 CGHYFHRPCFNSQAGKKKVCPICKQSLTRLTSASTENLSPTGPSTSNARRP
FT                 STFQSLQTRAQAKRVTNPDQVEMRNSEDINLSQGSTTMQQEAPNMESIQQS
FT                 MAETIRVAMVEQTRLIATTLADQTNRLVQALSEGLRVSPTANLANVTPSHV
FT                 RPLSEEQNQTLEQSLRLPSTMAPTSGFAQSQTARNGPTTNQAPHFENSLHS
FT                 GGDRSHSAAVVTPVNGRLGSDIRPDRISQIMANWKIRFTGKATMSIEDFLY
FT                 RVEALTKQTLDGNFELTARYASNLFDGSASEWYWRYHKSVPEVYWPDLCVA
FT                 LRGQFKDDRTDRNIRTEIEHRKQRSNESFDDFYGIIASLADKLSEPMSEKS
FT                 LVETLRANLLADIQHEILYEPANSVKDLRHLVRTREIFMQSVAKAKQSVVP
FT                 RRLVNAISETKSEMVSDEETTSNVEYDLSAVDLSCWNCAGKGHRYQECMAE
FT                 RRVFCYGCGKADTYKPSCINCSASVSKNYHARARRGVYANSWSTKRPIPTN
FT                 LVVSSLMSIHSTRLTFQQSC"
FT   CDS           3288..4970
FT                 /product="Gypsy-6_DGri-I_2p"
FT                 /translation="MYEELDRMLQLGVIQESNSSWSSPVVLVKKPGKVRLC
FT                 IDSRKVNEVTVKDAYPMPLIDGILSRLPKAEFITSLDLKDAFWQIPLDPNS
FT                 RDKTAFTVPGRPLYEFVVMPFGLTNAPQSMSRLMDKIVPAHLRNEVFIYLD
FT                 DLLIISDSFERHLEVLSIVASHLSRANLTLNVEKSKFCRREVKYLGHVIGN
FT                 GIISTDPDKISAVKDFPIPRSVKQVRRFLGMTGWYHKFIRNYASISSPLSD
FT                 TLKAKRKFEWTEEAQQAFESLKNHMCSAPVLHSPNFAEPFSIHCDASHTGV
FT                 GAVLMQTNSDGDDVPIAFMSRKLNRCQRQYTVTEKECYAAVLAVKKFRAYI
FT                 EGQELTVITDHASLKWLMTQVDLSSRLARWSLKLQGFKFKIQHKKGSQNIV
FT                 PDALSRTYTEDLSSVVLNSLIVDLESPEFKSPAYESIKNKIRTTQSSLPDL
FT                 KIENEFIYRRSEHAADSKAADDVCWKLWVPQPLILPALKTAHDDPLHAHGG
FT                 INKTLERLRRFYYWPNMVTDVKNYINAWFKATKHPNQTLKPKMGHTGQPAL
FT                 SRSKSGNIGIFVVL"
XX
SQ   Sequence 7739 BP; 2423 A; 1594 C; 1539 G; 2165 T; 18 other;
     ttaatattaa ttaaaatggc gcccaacgtg gggcccgaaa ggccagaatg gcccgaatgg        60
     cacgaatgcc ccgmaccggc mggaaccaat cggaccaaac ttcaattaaa gaattttgtg       120
     tcgaaacacc tgacacttaa cgttcgacct cttatattac ctcccatcct tctcttaata       180
     gaccccttgt ccttgttatt ggaatatgct acggatccag gacaattcaa tagatttcat       240
     ggcctagtat tataatccca ataactagta ggtgtagact ttgacttact ggatgtgtta       300
     taacttttat tggttataac tccgttgtca aataatagtt tatacctttt actccttgtt       360
     tacttattat tccgaaggtt ttataggttg tttattggat ttgcggagta ttgagctgca       420
     gccatcccct ttaatttcac ttcggataag ttcaacacta ccggtacgac tgttttatgc       480
     agataccgga ttccctattt tttttaatat tcctatcaga aaccttaagg aatttcgctg       540
     gacgaggatt aagcagcttt ctaagcgcaa tccgccgcga agtgacatat agtttcctga       600
     ttcccctttt tgccttatat cctttcagaa accttaagga atttcgctgg acgaggatta       660
     agcagctttc taagcgcaat ccgccgcgaa atgacatata gtttcctagt tctccttata       720
     atttccttcg tgttgcatct cattatataa caaaagggaa ttctattcta gtttacagtc       780
     agttgcatga ctcccatatt attatcgata tcgtgattac gaacaatttt gctatcttaa       840
     attttatttt gctccttctc tatcaaaatt agatgtataa attaaaatag tgattgacta       900
     gatttagtca atcaaakttt cgcaagtcat ttaccgagat ggttctgtct catagtacag       960
     aagatctsac tcgaattagt aacacaggca aacattgttg catttgttct gaaataatag      1020
     ttttccaggg tcagttatta gcmacctctt gcggacatta ctttcataga ccgtgcttca      1080
     attcccaagc cggcaaaaag aaggtgtgcc caatttgcaa gcagagcctg acacgcctaa      1140
     cttcggcttc aactgagaac cttagtccca ctggaccctc tacgtcgaat gcaagaaggc      1200
     cctcaacatt tcagtccctt cagaccagag ctcaagcgaa acgtgttaca aatcccgatc      1260
     aagtcgaaat gcgcaactct gaagatatta atttgtcaca gggctcaaca accatgcagc      1320
     aagaggcacc aaacatggaa tcgattcaac aatcaatggc cgaaacwata agagtggcta      1380
     tggttgagca aacccgactc attgctacca ctttggccga ccaaacgaac aggttggtcc      1440
     aagccctttc agaaggtctt agagttagtc caactgccaa cctagcgaat gtaactcctt      1500
     ctcacgtgcg gcctctgtca gaagaacaaa atcaaacgct agagcaatcc cttcgtttac      1560
     cttcgacaat ggcaccgacc tcgggcttcg ctcaaagcca gacagcaagg aatggtccta      1620
     caaccaatca ggcaccacat ttcgaaaact ctcttcattc tggtggtgat aggtcacatt      1680
     cggcagctgt agtaacccct gttaatggaa gattgggttc tgacattcgt ccagatcgga      1740
     taagtcagat aatggctaat tggaaaatta ggtttaccgg caaggccact atgtccatag      1800
     aagattttct atatcgcgta gaagctttaa caaagcaaac attggatggt aatttcgagt      1860
     tgacggccag atatgccagt aacctgtttg atgggagtgc tagcgaatgg tactggcgct      1920
     accataaaag tgtcccggaa gtttattggc cagacttgtg cgtggccctt cgtggtcaat      1980
     ttaaggatga ccggacggac aggaatataa ggaccgaaat agaacatcgt aagcaaagat      2040
     caaatgaatc atttgacgat ttttatggta tcatagcttc cttagcggat aaactgtccg      2100
     agcccatgtc cgaaaagtct ttggtagaga ccctaagagc caacctgttg gctgacattc      2160
     agcatgagat attatatgag cctgctaact ctgtgaagga tttgcgtcat ctagttcgga      2220
     ctcgagaaat cttcatgcaa tcagttgcaa aagcaaagca atcagttgtt cctcgacgac      2280
     tagtgaatgc catttccgaa accaaatctg agatggtctc tgacgaagaa actacatcca      2340
     atgttgagta tgacttgtcg gcggtagatt tgtcatgctg gaattgcgct ggaaaaggcc      2400
     accgatatca agagtgtatg gcagagcgta gagtattttg ttatggctgc ggcaaagcag      2460
     atacttacaa acctagttgt ataaactgca gtgcaagcgt ttcaaaaaac tatcacgcgc      2520
     gtgcacgcag aggtgtgtac gcaaacagtt ggtcaacaaa gcgaccaata ccgactaacc      2580
     ttgtcgtttc cagcctcatg tcaatccatt caaccagact taccttccaa caatcatgtt      2640
     gacctaccgg acagaccaaa aacccgttct aaacgtcgta gaattgattt taaaaatgta      2700
     tgtcgaatag aaaaaaaatt gctgttakct tcaataatag ccacacctaa tgatttacgc      2760
     cctcatgccc aggtagtgct gctcggtaaa accgtagtgg gacttatgga cactggggct      2820
     tcggtcagct gtatcggggg tactttcgct tctgaactcc ttcatgggga tctaaattat      2880
     aaggcaatga actccaaagt aagaacggct gatggaaaag cccaaaacat tgttggcaga      2940
     gtatttgcag aagtaactta caggggagag actaagaatt tgacgttcta tttagttcct      3000
     tctctagctg cagaacttta ccttggaatt gacttttgga cagttttcga cttgttacct      3060
     ttacacttaa tgacacagag tctaaatatt tcgtccctaa atgacccgac aatgcgagaa      3120
     ttgactccaa aacaacaaaa cttgctgcag gaatcaataa agttgttccc gtctttttca      3180
     aagacaggat tgggtaggac atccttaata tcacacgtaa ttgatgtagc cgacgctaaa      3240
     cctataaaac agcgtcacta tgcagtatcg cctgctacga gaagctgatg tacgaggaac      3300
     tcgatcggat gttacaactc ggagttattc aggaatcaaa cagctcctgg tcgtccccag      3360
     tcgttttagt gaaaaaaccc ggcaaagtta ggttatgcat tgatagcaga aaggtcaatg      3420
     aagtaaccgt aaaagatgcg tatcctatgc cattaattga tggtatctta agtagattgc      3480
     cgaaagcaga gtttattaca agccttgacc ttaaggatgc cttttggcaa atacctctcg      3540
     acccgaactc tcgcgacaag accgccttca cagttcctgg gcgtccttta tatgagttcg      3600
     ttgtcatgcc cttcgggctc actaatgctc ctcagtctat gtccagacta atggataaaa      3660
     tagttccagc gcatttgcgt aacgaagtct ttatttacct agacgactta ctgattattt      3720
     cagattcctt cgaacgccat ctcgaagtcc tgtcgatagt tgcctcacat ttatctcgtg      3780
     ctaatcttac ccttaacgtc gagaaaagta aattttgccg acgagaagtt aagtatttgg      3840
     ggcatgtaat tggcaatggc attatcagta cagatccaga caaaatatct gccgttaagg      3900
     actttccaat tccccgctca gtaaaacaag ttcgcaggtt ccttggcatg actggatggt      3960
     atcataaatt tatcagaaat tatgcttcta tttcatctcc attgtctgat actctcaagg      4020
     caaaacggaa gtttgaatgg actgaggaag ctcaacaggc attcgagtcc ttaaagaatc      4080
     acatgtgttc ggctccggta ttgcatagcc caaactttgc tgagcctttt tcaatacatt      4140
     gtgacgctag tcacactgga gttggagcgg tgttgatgca gaccaatagt gatggtgacg      4200
     atgtgccaat tgcatttatg tcaaggaaac ttaatcgatg ccaaaggcag tatacggtca      4260
     ccgagaagga gtgctatgcg gctgttttgg cagtaaaaaa atttagggcc tatatagaag      4320
     gtcaagagct tactgtgatc acggatcatg catctttaaa atggctcatg acccaagtgg      4380
     atcttagttc acggctagcc cgttggtctc taaaattaca agggtttaaa ttcaagatac      4440
     agcacaaaaa gggcagccaa aatatagtcc ccgatgctct ttcgcgtacg tatacggaag      4500
     atttgtcttc tgttgtgctt aatagcttaa tagtcgactt ggagtcacca gaatttaagt      4560
     ccccagccta cgagtccata aagaataaga ttcgcacaac ccagtcttct ttgccagacc      4620
     taaagattga aaatgaattt atttaccgtc gatccgagca tgcggcagac tccaaggctg      4680
     cagatgatgt atgctggaaa ctttgggtgc cacagcctct gatattgcct gcacttaaaa      4740
     cagcccatga tgatcccttg catgcgcatg gtggaataaa caaaacttta gaaagactca      4800
     gaaggtttta ttactggcca aatatggtaa cagatgtaaa aaattatata aatgcttggt      4860
     ttaaagccac gaagcatccc aatcagactt taaaacctaa aatgggacat actggccaac      4920
     cagccctatc acgcagcaaa tctggaaata taggcatttt tgttgtacta gmccaatatg      4980
     tcgaaatttc catttttgaa gcccgtccga aaatgtactg ctgaatctgt cagacgttat      5040
     ttggaagaag atctcccatt gctccggaat acccgaaacc aatagtatcc gacaacggag      5100
     ttcagtttaa atctaagtct ttcaactcct tgctagacag atacaacatt ttccatacct      5160
     atacagcata ttattctcct caggctaatg cttcagagag agtcaaccga tccgttcttt      5220
     cagccatcaa ggcatatgtg gacccaagcc atcgtaactg ggatgagaaa ttgagtttca      5280
     taagctgtgc acttcgctca agctttcatt tagccattaa cacaagccct tacaaattgg      5340
     catttggcca gcatatggtc acaaacggca gtagctacaa attattgcga actctaggca      5400
     tgctagatga tcgcagccta caatttagtc gagaagactc ttttgatctc ttgcgtagta      5460
     aggcgaaaga ttctatgcaa tctcagcgcg cacgaaatga gaaggcctac aacttgcggg      5520
     ccagagaagt gcattcaaaa tcggtcaaga ggtgtatagg cgcaactttc agcaaagcaa      5580
     ctttgcgaag ggatatagct ctaaactagc cccaagcttc gtcaaagccc gaattcgagg      5640
     aaaattggta attattacta cgagttggag gattccaagg aaggcttatt ggcaaattcc      5700
     atgcaaatag atattaagca atgattctat tgtcggcaag cgtgaatccc gctckwwgtg      5760
     ttccacccca agcgtgattt tagtgggggg gaaaatgtag tgcgcttgcc aagttaataa      5820
     aatgttatgc ctacgattat gctttgtttt ttttaagccg agcttttgcc gacgccctct      5880
     atgaggtaag gtacaatgtc aagccctttt ggttagttga ttaaaaattt ttctgatgag      5940
     tgccttgagt ttttgtctgc cgaaggggac agtcgtgcgm gtcccatcga ctttggtttt      6000
     ttttctcctg gtttcgcggt gatagaagag ttacacgtgg gcgcgatgga awtcgtccct      6060
     aacccgaaaa ttttgttctc gmctgaacta ataatataat tgccaccggc cgagaaaagt      6120
     tcccggtgtg cacgtgcgac aaaccaataa caaatgaaca aaaaaaaagg gaaagaaata      6180
     aaaagaaaaa aaactattta gtggggaaaa atatattccc aatttgttat cggcaataac      6240
     cgccaatgaa accatctaca atgacttgcc agtgaaaaaa aaaagaaaag gaaggaaaac      6300
     atatactttt tttgccacgg aactgatcgg ctgatcagcc agtgccaacc gccattgcca      6360
     acgcgggtcc acggtacagt cgccgctgga gtggattgag gctgtcccta cgttaacagc      6420
     gtcgaatcat caagcgatgc ggcttatacg ccacaattgc ctagccttat ctaaattttt      6480
     tttttgattt ttctttttat tatttgtaag atgaacccaa gacaaaattt aatagtcatt      6540
     aattaaaaat taaattcatt aaatattact aattacctaa gtcaccagca agtgaaatca      6600
     atcatagacc atatgtagtg tatttggtgc aaacagatta tattaaacga accaaaaaga      6660
     aagaaaataa taagtggaga aacsaaaaaa aaatgttcaa cactcgccaa cagtaaaatt      6720
     gttcctataa attttaaact aatccattga cctccccagc cgctcagatg ccccgctaca      6780
     aaagatcttt tggacgtgga ggatacccca agtaagtgca tctgatccca aaaattacct      6840
     ttcccctaaa ttttattgtt ggtaatcagc aacaatgctt cgatattaaa gtgtgataaa      6900
     atgcaagaaa aaaacggtgt agaagtaaat gtgcaaaact cactcaaktt ggggaggaga      6960
     aagacataga aaaaaaaaac tcactcaacg ttgatcgccc ttgcmtgagc ggmagaattt      7020
     tgagtgggct tttgaggtgt taatccaaac taaatcacgc ccgaaagcat gctactactt      7080
     taatatcgaa gtcgctgcca aaaagaaaaa aaataaatat gaatgaaaaa gctccgatat      7140
     aggaatgaag cattcgatta caaaaaaata tatatcaaat aaatacatct ataaacgtat      7200
     aaggaaagta aatataaatt aataaaataa aaataatata ataaatatat attcctatta      7260
     tgaaaaaatt taataataaa tagataatca taaaatttaa gtagtttaaa tatatcagta      7320
     gagaaataat aagggaaata agagaaacaa gttaccaaat taaatacttt aataatctgg      7380
     ttttgccctt atgatccgta tgtgccgaga tttttttttg gtttcacttt aatttttttt      7440
     attttttttt atttaatgta aagtcataat tttcaaataa tttacaacat aagaatatta      7500
     cttgttacaa aatgaaaact aaaatggaaa taaatgaata tatgaattag aatattgtta      7560
     aaatgaataa gtaatttttt ttcttgggag tcatgcaacg cacactgaac agtgaatgaa      7620
     ataagtcgtc gttgttatag ggatcatcca acattattat gtttaggtgc cggatgatct      7680
     aggtagggtg ggcatctgct gtggcaataa caccagccca gcagcaacga cgaaaaccc       7739
//
ID   Gypsy-6_DGri-LTR repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   29-SEP-2011 (Rel. 17.07, Created)
DT   29-SEP-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila grimshawi genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DGri_;
KW   Gypsy-6_DGri-I; Gypsy-6_DGri-LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-257
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1300-1300 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 257 BP; 61 A; 80 C; 50 G; 66 T; 0 other;
     tggagtgtcg cctccatgtt atatttatga gatcgtgcaa ttcccttttt ctctcttccc        60
     ccttcccggt aatgtggtcg aacgataccc gcacgcgata ttttttttaa ttaatattat       120
     acacggcgag cacgtagcgc aaggaacctt aaggaacccc gaccccccac cgatcacaca       180
     gccggagcca gcgcgtgcac ccctccttgt aggctacact aacatccgct cgccagaata       240
     ccaggttata tgctaca                                                      257
//
ID   Gypsy-6_DHyd-I repbase;    DNA;    INV; 5130 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-5130
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2411-2411 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           541..4869
FT                 /product="Gypsy-6_DHyd-I_1p"
FT                 /note="YppG-like, retropepsin, reverse
FT                 transcriptase, ribonuclease H and integrase."
FT                 /translation="MEGDATSPLSDANMTQVINQLKNIEKFTGDKNSLYTF
FT                 VSRIDYILALYTTNDARQRSILFGLVESCISSEVMLSLGINNLTTWTDLRK
FT                 QLILNYKTQTQNHVLLEEFRNTPFKGNVKAFLEEAEHRRQTLASKLELENN
FT                 LDEKTLYARLIKTSIENLIQKLPTHICIRIINCEISDLRSLINILQEKNLY
FT                 DEPCLIPNQNKVKQDKNFKPSNSNPNIQKFPTFLQPNHSYVPYRPYFQQPY
FT                 LPPTPNYTNHNNISPNHYSPRPIQPTPNPVRPVLRQNQFDINRFGQVAPQQ
FT                 IPGIPNQPTKRIRPAESRQSKMSIDKETRNQEELNYHDYMQQEYYNQLASF
FT                 PEHYPQYYQEQIYPQISDYTYTQTATAEHETEQPNEIEIEKAENFSAASLG
FT                 NQQYIVITYKGKNLKCLIDTGSTVNMMTSNVFNLPIHDTDCLIQTSNGPLT
FT                 ITKKVNVLSNNLFKSNNEFLLHPFSPDYDLLIGRKLLSEAQAVIDYKFQIV
FT                 NLYNRKYKLINDIPTTNLNHFVVQSNPESNQHFKNPIRDNSKNEEFMNSSL
FT                 YRLEHLNEEEKFNLISLLKQYQHIQFREGDKLSFSNQEKHVINTTHNSPLY
FT                 TKPYSYPQAYEQEVEQQIQNMLDQGIIRPSNSPYCSPIWIVPKKQDASGKQ
FT                 KFRIVIDYRKLNDITINDRHPIPNMDEILGKLGRCKYFTTIDLAKGFHQLE
FT                 MHPDSIQKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNNILRPLLNKHCL
FT                 VYLDDIIVYSTSLKEHLHSLQLVFEKLAEANLKLQPDKCEFLKQETTFLGH
FT                 VITKDGIKPNPDKIKAILKYPIPTKTKEIKGFLGLTGYYRKFIPNFADIAK
FT                 PMTTVLRKDSKIDIKNPEYIRAFEKLKQLISNDPILKIPDFKNKFILTTDA
FT                 SNVALGAVLSQDGHPISFISRTLNDHETNYSAIEKELLAIVWATKIFRHYL
FT                 LGRHFEINSDHQPLCWLYKMKEPNSKLTRWRVKLSEYDFDIKYIKGKENHI
FT                 ADALSRVKIEQTYFGEETQHSADEDNSNLIGLTEKPINTFKRQIIFSKGIP
FT                 NIKKQNYFKKLIIYITYDNMTKDKAEKYLIDHFCTKTSVMFIDSDADFEII
FT                 QNAHKEIINTSHTKILRSLIQLKNIDSYAEFKELILKTHEKLLHPGIQKTN
FT                 KLFCETYYFPNSQLLTQNIINECNICNLAKTEHRNTNMPMKITPKPEHCRD
FT                 KFVIDIYSSEGKHYLSCIDTYSKFATLENIKTKDWIECKNALMRIINQLGK
FT                 PILLKADRDGAFSSLALKKWLESEGIELQLNTTKTGIADIERLHKTINEKI
FT                 RIINTLNDEENKLSKIETILYIYNHKTKHDTTGQTPAHIFLYAGQPKLDIQ
FT                 EKKEKVINKINNNRQEYEIDTRYRKGPLQKGKLENPFKANKNVEKLDPDHY
FT                 QITNRNRITRYYKTQFKKRKKINQVKIIT"
XX
SQ   Sequence 5130 BP; 2166 A; 1009 C; 668 G; 1287 T; 0 other;
     ggcgcagccg gtaggatgac aataaattgt ggaccatctg atgcaataac taagttatta        60
     attctttttg tcccgtttac tgccatccgc taaacaacta acgcaaaggc aacccacgcg       120
     acggtcaata tcgcgtcaag ttttaaaaaa aaaaaaaaaa cataaaacct cgacagtgac       180
     gtgaaaaccg aaattcgcaa attgccaaag ccgcagattg tgattgtgta aataaaaata       240
     ataaaataac aacttgaaaa taattcaaga agacgcgata gaattcgaag agaacataat       300
     tccagacgat tctggttatc tcaaaaacat tcgaaagtgc tatctgtgca acaaactgaa       360
     caattaataa attaagtgaa tacaaattaa gtgaatatac ttaaacaaaa aactatttga       420
     acaatcaata aattaagtga atataattaa acaaaaagaa atttacaata aaaagcaaac       480
     tgaaataaaa aataaaataa aaaatatata ctttaaattg taacaaatta aataatcaaa       540
     atggaaggag acgcaacatc acccctctcc gatgccaaca tgacacaagt gatcaaccag       600
     cttaaaaata ttgagaagtt tactggagat aagaacagtc tgtacacgtt cgttagccgg       660
     atcgactaca tattggcact ctacaccacc aatgatgcga ggcagaggtc aatacttttt       720
     ggacttgtgg aaagctgcat cagcagtgaa gttatgctat ctcttggcat aaacaatttg       780
     acaacatgga cggatcttcg aaaacaacta attttgaact acaagacgca aacccagaac       840
     cacgtcttat tggaggaatt cagaaacacc ccattcaaag gcaacgtgaa agcttttctg       900
     gaagaagcag aacaccgtag gcagacattg gcgagtaagc tagaactaga aaataattta       960
     gacgaaaaaa cattgtatgc gcggttaatt aaaaccagta ttgaaaactt aatccaaaaa      1020
     ctacccacac acatttgcat tcggataata aattgcgaaa tttccgattt aagatcttta      1080
     ataaacatat tacaagaaaa aaacctttat gatgaaccct gtctaattcc aaatcaaaac      1140
     aaagtaaaac aagataaaaa cttcaagcca tcaaattcca atcccaatat tcaaaagttt      1200
     cctacatttc tccaaccaaa ccattcctat gtcccatatc gaccctattt tcaacaacca      1260
     tatcttccac caacacctaa ttatactaac cataacaata tttcacctaa tcattattca      1320
     cctcgaccaa tacaaccaac ccctaatcca gtcagaccag ttcttagaca aaaccaattt      1380
     gacattaatc gcttcgggca agtagctcca caacaaatcc ctggcatacc taaccaacca      1440
     acaaagcgta ttagacctgc agaaagccga caaagcaaaa tgagcataga caaagagact      1500
     agaaaccaag aagaattaaa ttatcacgat tacatgcagc aagaatatta taatcaatta      1560
     gcttcttttc ccgaacacta tcctcaatat taccaagaac aaatttaccc acaaatctca      1620
     gactacacat acacacaaac agccacagcc gaacatgaga cagaacaacc aaatgaaata      1680
     gaaatcgaga aagccgaaaa tttttcagct gccagcctcg gaaaccaaca atacatagtt      1740
     atcacttata agggcaaaaa tttaaaatgt ttaatagata caggatctac tgtaaatatg      1800
     atgacatcca atgtttttaa tttaccaatt catgataccg attgtcttat ccaaaccagc      1860
     aatggtcctt taactatcac aaaaaaagtg aatgtccttt ccaacaactt attcaaaagt      1920
     aataatgaat ttcttctaca tccattttca ccagattatg atctattaat tggtagaaaa      1980
     cttctctcag aagcacaagc cgtcatagat tataaattcc aaattgtaaa tttatacaat      2040
     cgaaagtata aattaattaa cgatattccg accactaact taaaccattt cgttgttcaa      2100
     tcaaatcctg aatctaatca acacttcaaa aatccaatca gagataattc aaaaaatgaa      2160
     gaatttatga actcaagcct ttaccgacta gaacacttaa atgaagaaga aaaatttaat      2220
     ttaataagct tgttgaaaca atatcaacac attcagttca gagaaggcga caaacttagt      2280
     ttcagtaatc aagaaaagca tgttattaac actactcaca attcaccttt gtacacaaaa      2340
     ccatacagtt atccacaagc atacgaacaa gaagttgaac aacaaattca gaatatgcta      2400
     gatcaaggca ttatacgccc cagcaattcc ccttattgta gtcctatatg gattgtacca      2460
     aaaaaacaag acgcgtcagg caaacaaaag tttagaatcg taattgacta tagaaaatta      2520
     aatgacataa ctataaatga cagacaccca ataccaaata tggatgagat cttaggaaaa      2580
     ctaggtagat gcaagtattt cacaacaatc gaccttgcaa aaggatttca tcaacttgaa      2640
     atgcatccag attccattca aaaaaccgct ttttccacta aacatggcca ctatgaatat      2700
     cttcgtatgc catttggatt aaagaatgca cctgcaacct ttcaacgttg tatgaacaat      2760
     attctgcgac cattactaaa taaacactgt ttagtatatc tagacgatat aattgtatat      2820
     tcaacatctt taaaagaaca cctacactca ttgcaactag ttttcgagaa gcttgctgaa      2880
     gcaaatctca aattacaacc tgacaaatgt gagtttctaa aacaagaaac taccttccta      2940
     ggacatgtca taactaagga tggaataaaa cccaatcctg ataaaatcaa agcaattctg      3000
     aaatatccta ttcccacaaa aactaaagaa ataaaaggtt ttcttggact aaccggttat      3060
     tatagaaagt ttattccaaa ttttgcagac atagccaaac ccatgacaac agtactaaga      3120
     aaagactcaa aaatagatat taaaaatcca gaatatatta gagctttcga aaaattaaaa      3180
     caacttattt ccaatgaccc gattttaaaa attccagact tcaaaaataa attcatttta      3240
     acaactgacg caagtaatgt agctcttgga gctgtacttt ctcaagacgg acatcccatt      3300
     agttttatca gcagaaccct caatgaccac gaaactaact acagcgccat agaaaaagaa      3360
     cttttagcta ttgtatgggc aacaaaaatc tttcgacact accttctagg tcgacatttc      3420
     gaaatcaata gtgaccatca accattatgt tggttataca aaatgaaaga accaaattca      3480
     aaattaaccc gatggagagt aaaattatca gaatacgact ttgacataaa atacataaaa      3540
     ggaaaagaaa accacatagc tgacgcccta tcgcgagtaa aaatagaaca gacttatttc      3600
     ggagaagaaa cacaacatag cgctgacgaa gacaatagta atttaattgg gctcacagaa      3660
     aaaccaataa atacatttaa aagacaaatt atattttcta aaggcattcc aaatattaaa      3720
     aaacagaatt acttcaaaaa attaataatt tacattacat acgataacat gactaaagac      3780
     aaagctgaaa aatatttgat tgaccacttt tgtacaaaga ctagcgtaat gttcatagac      3840
     agcgatgcag attttgaaat cattcaaaac gcacacaaag aaattatcaa cactagccac      3900
     accaaaattc tacgaagcct cattcaatta aaaaatatag actcatatgc cgaatttaag      3960
     gaacttattt tgaaaacaca tgaaaaactc ttacaccccg gtatccaaaa aacaaataaa      4020
     ctcttctgtg aaacttacta tttccctaac agccaattac taacacaaaa tataataaac      4080
     gaatgcaaca tttgcaacct agcaaaaacc gaacacagaa acacaaatat gccaatgaaa      4140
     attactccca agcccgaaca ttgtcgcgat aagtttgtaa tagacattta ttcctctgaa      4200
     ggcaagcact atcttagttg catagatact tattcaaaat tcgctactct tgaaaatatt      4260
     aaaacaaaag attggataga atgcaaaaat gcattaatgc gtataattaa tcagttagga      4320
     aagccaatat tattaaaagc tgaccgagac ggcgcatttt ccagtttagc actaaaaaaa      4380
     tggctcgaaa gcgaaggaat agaattacaa ttaaatacaa caaaaacagg aatagcagac      4440
     atcgaacgac tacataaaac aataaacgaa aaaattagaa taatcaatac cttaaatgac      4500
     gaagaaaata aactcagtaa aatagaaact attctctaca tctacaatca caaaacaaaa      4560
     catgacacaa ctggacaaac tcctgcacac atatttctat atgctggaca acctaaatta      4620
     gacattcaag aaaaaaaaga aaaagtaata aataaaatca acaataaccg acaagaatac      4680
     gaaatcgata ccagatatcg aaaaggaccg ttacaaaagg gcaaactaga aaatcccttt      4740
     aaagccaata aaaatgttga aaagttagat ccagatcatt accaaattac taacagaaat      4800
     agaattacac gttactataa aacacaattt aaaaaacgaa agaaaataaa tcaagtcaaa      4860
     ataattacat aatactaatg atatcaacgt cctatatccc aattttaatc cactaatatt      4920
     attcaaacta tgtcatactc tcgataataa tggctacaaa cacataaata gttaagaata      4980
     aattgaataa tgttgtattc aaaatattaa taagctcata tataaaacaa ccacaattaa      5040
     taagtgtatt agaaaccaaa tcatatcaaa atcaccaaaa ctaccttaag tatcttcttg      5100
     agtcgcaggc ttacctctta aggagaggga                                       5130
//
ID   Gypsy-6_DHyd-LTR repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-399
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2420-2420 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often ATAT.
XX
SQ   Sequence 399 BP; 130 A; 75 C; 64 G; 130 T; 0 other;
     agtgacatat tcatactgac aatgtccaca acacatagaa tattgaaaac tagttcatac        60
     tggattttct tatatcacga aaatctagaa taaagcgaaa ataaccaaat cataaatagt       120
     ggcgccggcc tgacaaaatc ccgttgcatt ttttgctatt gcataggaat aatgttgcga       180
     gccgaaattc ttagaacgac gcgtccaact gatctttgtc tgctgcgtaa tttcagcagc       240
     ctataaaaga gcctttaaca aaaattgtct ttagtcttaa gctattgttc aataaagcaa       300
     gttgtcataa tctaactttg acttcgtctt ttaatttaca ttagcgttgc tgttagcata       360
     tgtcgcggca tttattcgac tgataacata tatctaatt                              399
//
ID   Gypsy-6_DMel-I repbase;    DNA;    INV; 7241 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7241
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1042-1042 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(5813..6160,6109..7116)
FT                 /product="Gypsy-6_DMel-I_2p"
FT                 /translation="MVGAIHIIKYDSPVVPLQRGNVWRVTGVFKLVHFIDL
FT                 IGMRRIVEATQGEAAMINDQRITTNNDSLSAGSNRGSRPADRLTASEPSGH
FT                 QLVGLRLEMDSRLARCSRLGRIIRIRIIQARQMQQTGTNNQNQNNLARNND
FT                 HQIRINTRLFDATHQSLQQLNDVIGKVNPIDGDFHLFTAILHKAMILATQV
FT                 AEITRACQLAKTGVVNTNLLGHEEMAVIPSEVRDLPYQNAVVEFSRPTILT
FT                 NGTALLYIVAMPKVTEQKYRMIYLYPTVIEGKQVILEANKVATTAEETYIV
FT                 LGKCLSIGNTTVCQEKDLRKLKEDTCIPRLLKGGHATCSYLRSNAETNMPV
FT                 DDGTIFLTNFNGSITGPTKEYNLKGSYIIQYSNETIAVKGRNYSSHTTTHL
FT                 MAIPAVLSKITATKYELSLEYVHDFSLENIKRLSATSSRLVYSCSLEIILV
FT                 MIILVSS"
FT   CDS           join(1113..2039,2043..2396,2333..3394,3349..4878,
FT                 4839..5546)
FT                 /product="Gypsy-6_DMel-I_1p"
FT                 /translation="MEEIKKPLGKFDDSLKALLNQVMGIKEDVKKVSNRLC
FT                 TLENEYEQRNPVANHPIPLTKPRNEYKLRETSTLPDCVKELQPFEGQLEEY
FT                 VSWVNRAQLILNDYEIVRDKPLYRSIVLHIRQKIRGNADLALCSYSVPDDD
FT                 WAEVKRVLALHYADKRDVRTLEYQLSQLTQGNKSLEEFYMEVNSQFSLIIN
FT                 KLKSGGHPPNVVSALIETYRDKALDVFLRGLEGDVSKLLVIRSPKNLPEAY
FT                 SFCLELQNINFRGRSVRPTYTPSFNHPAQQYRSSVVPRFPSAQPPIRAPMI
FT                 AAQNDSSGRNWQGYQGYGPRQAIKMESNRSGQSYQSGLNARREEDTASKRS
FT                 PSTSANPFRKAQRLYHMTTVGPPSTIIAEDTHYEALYGEGCEHNDGSDQQV
FT                 FLGEQNQGVIVEEQPNAEEVTNFMTDASLAYHTGTAKCGRSNKFYDGRLSS
FT                 VPYLEYDTRDGAKLQFLVDTGANKNFISPKIAAGSTPLTTPFFAQSATGCV
FT                 KITRQLVGQFFKKFGNDLLLTFFVLPGLNSFDGIIGDDTLKELKALIDREK
FT                 DLLVITPGVKLPLLAKKSFNVHSLINIDHSESINLALNALISKFSNIFEPI
FT                 SPGGAVNTVVRAEIRTNTQDPIYAKSYPYPANMRGVVEAQVEELLRDGIIR
FT                 PSRSPYNSPLWVVPKKPKPIGEKQYRLVIDFKRLNAVTIPDAYPIPDINST
FT                 LASLGKARYFTTLDLTSGFHQIHMKEQDIPKTAFSTLNGKYEFLRLSFGLK
FT                 NAPAIFQRMIDDVLREYIGKICYVYILMILRVHRENMLCVYIDDIIVFSED
FT                 YDNHWSNLRLIFERLRDANLPVNLEKTQFLASEVEFLGYIVSAESIKADSK
FT                 KVEAINKMEPPTNVRELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGKYAK
FT                 IKASQSTKVLIELDEEALQAFKNLKIILSSSDVLAFPNFNIPFHLTTDASN
FT                 YAIGGVLSQNAQGKDRPIAYISRALNKTEENYATIEKEMLAIVWALDNLRS
FT                 YLYGATTFRVYTDHQPLTFALGNGNFNAKLKRWKSRIEEYNCELIYKPGKS
FT                 NVVADALSRIVSHVNYLGSDTATGSDTDSVQTIHSALHDVSHYVPHVEVPF
FT                 NVLRNQLIFQLDLPEYSCEHPHSGFVRHFIPINSGTQFSLTISLRKYLKPS
FT                 FINGVKIPDSYLHLFQTQCLNNFKMFKIRITQRLVTDLSDEEEICRVIDKE
FT                 HRRAHRAPKEVRLQILEKFYFPKMASTIRVQLSSCECCKLFKYDRHPNKPV
FT                 LHSTPIPDYPCEILHIDIFTLQKKVYLRSAYLYFTKESISEICIDKFTKFA
FT                 KLFPLESKSSVHLREKLVEVLHYFSVPKTIVSDNERGLLCPTVLNYLQTLG
FT                 IKLYNTPTQKSEVNGQVERFHSTFLEIYRCLKTEYPTFKDTELVPITVDRY
FT                 NNSVHSVTNRKPVDIFFNRTSRTNYQGLVDFKQQTLEDVKGLIAFNQESTN
FT                 FYKNKLRTKPLSYNQGDKIFVANRQIKTKEKQRYKPEVVQEDRRVTVKTRS
FT                 GKTFHKSDLRN"
XX
SQ   Sequence 7241 BP; 2445 A; 1511 C; 1456 G; 1829 T; 0 other;
     ggcgccggaa caggcttctt cggaagtaga cccttggcta cctgggagaa gctagttatt        60
     atgtaaagtg cgtggtgtgt tcgaaagttt ttcgacaagt gagccaagaa ataaaagaag       120
     tgttaataga aattcctaaa taaaattaaa caaaaaacaa ttacacactg cggcagtgaa       180
     aaaatctgcg agtgcaaaag atattgttaa aataaataga aattaaaaac aaatacacac       240
     tgcggcagta agaagaaaaa tctgcgagtg caaaaaaatg ttgttaaaat aaatagtcat       300
     aaaaaacaat tacacacttc ggcaggaaaa aaaactgcga gtgcaaaaat attgttgaaa       360
     taaataaaag ataaaaacca actacacact gcggcagtaa ggaaatctgc gagtgcaaat       420
     aattggtaaa ataaaattaa tgcaagaagt aaaatgtgtt aattcacagc tataacataa       480
     gtaaatgtga ataaataatc aatcaaaaaa ttaaaaatcg aaaccaatgg aaaaataaga       540
     tgtgtggtaa tctactggaa aggctaagtg gtgtggaatg cattaaaaaa agctgcctag       600
     tagactgtgt gcaactcgta ccttagtagg ctacctgcca aaaaggatcc attacggacc       660
     accgtgccca gtatctaaat attaggaaaa tttattaaaa ttggctcaca cttaaaaaca       720
     aaaaaaaaaa aataagaaaa aatataaaat aaaaataaag gaaaaaagag aaacgtccga       780
     ttcccaccgc gcggctattt aaatatttac gaatcttaag aaattcatta ttaaagttat       840
     tttcttttac tctatagaac ttccgtcaag ggattttaaa caccacaaca caacatatta       900
     taccaataca aaaaggaaca acactagttg cctacacatc tactcaccaa cctgagtaag       960
     tgagacgcac tctcttcgga aaaagttttg taaggaaaaa gttgtaaatt gtatcaaaaa      1020
     atttaacaaa ttacaccttt gattttaaat cgaaaattta aaattcttaa ttaccggttc      1080
     ttaccttaca gtttcccggg ctagcaaaga aaatggagga aattaagaaa cctttaggga      1140
     agtttgatga ctctttgaaa gctctgttaa accaggttat gggtattaag gaggatgtca      1200
     agaaggttag caataggctt tgtacgttgg aaaatgagta tgaacagcgc aatccggtgg      1260
     cgaatcatcc tatcccccta actaaaccac gtaacgaata caagctaagg gaaacttcta      1320
     ccttacccga ttgtgtaaag gaattacaac cattcgaagg tcaattggag gagtatgtgt      1380
     cgtgggtcaa cagggctcaa ttgattctaa atgactatga aattgtaaga gacaagcctt      1440
     tgtataggtc cattgttttg catattagac agaagataag aggtaacgcc gatttggccc      1500
     tctgttctta tagcgtacca gacgacgact gggccgaagt caaacgagtt ctggcacttc      1560
     attacgcgga caaaagagat gttcgcactc tcgagtatca actgtcgcag ttgactcagg      1620
     gtaataagtc cttggaggaa ttttatatgg aggtaaatag tcagttttca cttattatta      1680
     acaagttgaa gagtggcggt catcccccaa acgtggttag cgccttgata gaaacctata      1740
     gggataaagc tttagatgtc ttcttgagag ggctcgaggg cgatgtttcc aaattattgg      1800
     tgatacgtag tcccaagaat ttgccagagg catatagttt ttgcttggag ctacagaata      1860
     taaacttccg gggacgctcg gtcaggccta cttacactcc ttcattcaat caccccgctc      1920
     aacaatatcg ctcttcagtc gtgccacgtt tcccttcggc gcagccgccg attagagcgc      1980
     ctatgatcgc tgcccaaaat gatagctcag gtaggaattg gcagggttat caaggttatt      2040
     aaggtccgcg acaggcaatt aagatggaat ctaacaggtc aggtcagtcg tatcaatccg      2100
     ggctcaacgc tcgcagagag gaggacaccg ctagcaaacg gagtccaagc acatccgcaa      2160
     acccttttag gaaagcgcaa cgattgtacc acatgacgac agtcgggcct cctagtacaa      2220
     tcatagctga ggatacccac tacgaggcat tgtacgggga aggttgcgaa cataacgatg      2280
     gttcagacca acaggtcttc ctaggagagc aaaaccaagg agtaatagtt gaggaacagc      2340
     caaatgcgga agaagtaaca aattttatga cggacgcctc tctagcgtac catacttaga      2400
     atatgatacc agagacgggg ctaagttaca attcctagtt gacaccggcg caaataaaaa      2460
     ttttattagc ccaaaaatcg ctgctggttc aactccttta acaacaccat tctttgccca      2520
     gtctgccaca ggttgcgtaa aaatcacacg tcaacttgtg gggcagtttt ttaaaaaatt      2580
     tggcaatgac ttacttctca catttttcgt gttacctgga ttaaattcct tcgacggaat      2640
     aattggtgac gacacgctta aggaattaaa agccttgatc gacagggaga aagacttact      2700
     tgttataaca ccaggcgtca agctgccact tttagctaag aaatctttca acgttcattc      2760
     attaattaat atcgatcatt cagagtccat aaatcttgcc ttgaatgctc taatcagcaa      2820
     attttcaaat atttttgaac caatatcacc tggaggagcc gttaacactg tcgttagagc      2880
     agaaattcgt actaacactc aggaccctat ctacgctaaa agttacccat acccagccaa      2940
     catgagaggg gtggtagaag cacaggtgga agaattgtta cgcgatggta taataagacc      3000
     ttcaagaagt ccttataact ctcccctttg ggtcgtgcct aaaaaaccaa aaccaattgg      3060
     ggaaaaacaa tatcgtttag tgattgattt caagcgttta aacgccgtta ccatacctga      3120
     tgcgtaccct ataccagaca ttaattccac actggccagt ctcggtaagg ctagatattt      3180
     caccactctc gatctaacgt cgggcttcca tcagattcac atgaaagaac aggacatacc      3240
     caaaacagca ttttctacgt tgaatggaaa atacgagttt ttgcgcctct ccttcggatt      3300
     aaagaatgcg cctgctattt ttcaacgtat gattgacgat gtgcttagag agtacatcgg      3360
     gaaaatatgc tatgtgtata tattgatgat attatagtct ttagtgaaga ctatgacaac      3420
     cattggtcga atctgcgcct tatttttgaa agattgagag acgcgaatct tccggtaaat      3480
     ctggagaaaa cccagttctt ggcaagtgag gtagagttct tgggatacat tgtctcggcg      3540
     gagagcatta aagccgacag taagaaagta gaagccatta acaaaatgga accacctacc      3600
     aacgttaggg aattaaaaag gttcttgggt atgacttcct actacaggaa gtttattcag      3660
     gattacgcca aggtggcgaa acccttaact aatcttacta gagggaaata tgctaaaatc      3720
     aaggcatctc aatcaacaaa ggttctaatt gagttggatg aagaagcctt acaagccttt      3780
     aaaaatttga aaatcattct gtcttcatca gatgtacttg ctttccccaa ttttaacata      3840
     ccatttcacc tgacaacaga cgcgtccaat tacgctattg ggggggtttt gtcacagaac      3900
     gcccaaggga aagacagacc catcgcttat atatcacgcg ccttaaataa aactgaagaa      3960
     aattacgcta caatagaaaa ggaaatgctc gcgatagtct gggcattaga caatctacga      4020
     tcatatttgt acggcgctac aacattcaga gtgtatacag atcatcaacc tcttacattt      4080
     gccttaggca acgggaactt caatgctaaa ctgaagcgtt ggaaatctcg catagaggag      4140
     tacaactgtg aattgattta caaaccaggg aagtcaaatg tagtcgccga cgcactttct      4200
     cgtattgttt ctcacgttaa ttatttagga tccgacacag ctacaggttc tgatactgat      4260
     tccgtacaaa ccatccatag cgctctccac gacgtttcgc actacgtgcc ccacgtggaa      4320
     gtgcccttca acgttcttag aaaccaatta atttttcaac tggacttacc cgaatactct      4380
     tgcgagcatc ctcattcggg atttgttcgt cattttatac ctattaacag cggtacccaa      4440
     ttcagcctaa ccatttcatt acgaaaatat ttaaaaccat cctttattaa tggagttaaa      4500
     attccagatt catatttgca cctcttccag acacaatgtc tcaataattt caaaatgttt      4560
     aagatacgta ttacacaaag attagttaca gacttatctg atgaggaaga aatctgtagg      4620
     gtaattgaca aagaacatcg gagggctcat cgggcaccca aggaggttcg tcttcaaatt      4680
     ctcgaaaagt tttatttccc aaaaatggct agtacgatcc gtgttcagct gtcttcatgc      4740
     gaatgttgca agttgtttaa atacgacagg cacccgaata agccagtctt gcactcaaca      4800
     ccaataccag attatccctg cgaaatcctt cacattgata tctttacttt acaaaagaaa      4860
     gtatatctga gatctgcata gataagttta cgaaattcgc gaaacttttc ccgttggagt      4920
     caaaatcttc ggttcatctg cgggaaaagt tggtggaagt acttcactat ttttcagtcc      4980
     ctaaaactat tgtgtcagac aatgagaggg gattgctatg tccaactgta ctcaattatt      5040
     tacaaacgct gggaattaag ttgtacaaca ccccaaccca gaagagcgaa gtcaatggtc      5100
     aggtagaaag attccactcc acctttttag aaatctatag gtgtctaaaa accgaatatc      5160
     caacgtttaa ggacacagaa ttggtaccca taacagtgga cagatacaac aactctgttc      5220
     actcagtcac taatagaaag ccagttgaca tttttttcaa cagaacatct cgtacaaatt      5280
     accaggggtt ggttgatttc aaacaacaaa ccttggaaga tgttaaaggt ctcatcgcat      5340
     tcaatcagga gtcaactaat ttctataaaa ataagcttag aacaaaaccc ctttcctaca      5400
     accagggaga caagattttc gtagccaata ggcaaatcaa aacaaaagag aaacaacgct      5460
     acaagccaga ggtagtacaa gaagatagaa gagtaactgt caagactaga tccggtaaaa      5520
     cttttcacaa atcagatctt aggaattaat aacaaaaaga gagagagcgt gtcactttta      5580
     atcatacact tataaattaa gaatattaga actacacttt taactgtcat aatgtcccca      5640
     cacaaattgt taagttaaaa ttgtaattca aaatacacca tttattcacc ctacgacggg      5700
     aggataacgt aaaatctgaa gctaaacgta aaaaaaaaaa aacacaaaaa actatcttgt      5760
     atcataccgc aatatctgaa taatccgaaa actaagtttg ctcttcatcc acatggtggg      5820
     agcaattcac ataatcaagt acgattcacc tgtcgtccca ctacaaagag gcaacgtatg      5880
     gagagtaacc ggagtcttca agttggtgca tttcatcgat ttgataggga tgcgacgaat      5940
     cgtcgaggcc actcaaggag aagcggctat gatcaacgac caacgaataa caacgaataa      6000
     cgactcacta tctgcaggaa gcaacagagg gtctcgtccg gctgaccggc ttaccgcatc      6060
     ggaaccgtcg ggccatcaat tggttgggct ccgcctggaa atggatagca ggctcgccag      6120
     atgcagcaga ctgggacgaa taatcagaat cagaataatc tagccaggaa caatgatcat      6180
     caaatacgga tcaacactag gctattcgac gcaacacacc agtcgctcca gcaactaaat      6240
     gacgttattg ggaaggtcaa ccccatagat ggggattttc atctcttcac cgctatactt      6300
     cacaaggcta tgatcttagc cacacaggta gcggagatca cgcgagcttg tcaattagct      6360
     aaaactggcg tggtcaacac aaacctgttg ggccacgagg aaatggcggt gataccgtcg      6420
     gaagtaagag accttcctta tcagaacgca gtggtagagt tctctcgacc tacgatacta      6480
     actaatggga cggccctact ttacattgtg gccatgccca aggtaacgga gcagaaatat      6540
     cgtatgatat acttgtaccc aacggtgatt gagggtaaac aggtgatatt ggaagccaac      6600
     aaagtggcaa cgaccgccga agaaacgtac atcgtcctcg gcaaatgcct ctccataggc      6660
     aatacaacgg tatgccagga aaaagacctg cgtaaactaa aggaggacac ttgcattccc      6720
     agactgctta agggaggaca cgctacttgt agctacttga ggagcaacgc agaaaccaac      6780
     atgccagtcg acgacggcac gatcttctta acaaacttta atggttcaat aaccggcccc      6840
     acaaaggagt acaacttgaa gggatcttac ataatacaat actccaacga aaccatcgct      6900
     gttaagggca ggaattacag cagccatact acaacacatc tgatggcaat tccggcagta      6960
     ctctcgaaaa taactgcaac gaagtacgaa ctttccttag aatacgttca cgactttagc      7020
     ctggaaaaca tcaaaaggtt atccgcaaca tcaagcagac ttgtatactc ctgttctctg      7080
     gaaatcatat tggtaatgat catcctcgta agcagttaag atcacgtcaa cgaaaggcat      7140
     cccaaatacg ggcgacttcg cttcggaatt ggaatcacag gtcaccagcg tcaaaagcga      7200
     gctcaagtga tctgcgggac gcagatcttg tggtggggag g                          7241
//
ID   Gypsy-6_DMel-LTR repbase;    DNA;    INV; 434 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-434
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1031-1031 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 434 BP; 109 A; 130 C; 105 G; 90 T; 0 other;
     agttaacaca ggccacaacg agcctcctcc ccgtccccct caataactcg ctcggccaac        60
     aacaacgctg cgctggtcaa atatcgacta gcgcaagtgt cgcaatatcc gttgcgacca       120
     aaacgctgac accgctgaac gctgcacgcg cgtcgccgct gtgggaccaa aaaaccacag       180
     cgtcagctcc cgacagtgct gcgctggcta agcattggcc gacgctgttg tcgcaacgac       240
     cgctgcggct agaaggctga gccagctact caaggcgggt agataagccg gtggattcgt       300
     cgcgggaagg cagtgcaatt ctggctgcga tcctatccta tcaacctaaa cctcgaataa       360
     aaattaaaat caattcgtct tctttatttg gaaatgcagt tctcgttaag gtagtccttc       420
     gggctgccat aact                                                         434
//
ID   Gypsy-6_DMo-I repbase;    DNA;    INV; 7905 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-7905
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1763..3112
FT                 /product="Gypsy-6_DMo-I_1p"
FT                 /translation="MSASERELSEMRESLGRFEATLSLLSNQNAAQREELK
FT                 EAFAKINSLEGDLARERESRNPTVEEARPLVRPRNVFDLAECNKIPECVKD
FT                 LQTFEGGMPEFESWANRIDSIFTDYELIRDKRQYRAIITYIRQKVRGPADK
FT                 ALTSYGVQDDDWPEMKRVLALHYADKRDLSTLEFQLSKMFQGTMSVEDFFN
FT                 KVNGYFSLIMGKLRNGPYTAEVSSALTDIYRKKALDAFIGGLNGDLPRFLM
FT                 VHRPKDLPEAYSLCNELQNVCMRAGPAFASRNAFSGNSRPVGPAPNNSTFR
FT                 HPRPFLNSGNAGYVTQQQGYMNNNTPPRPPFTPRYGVQPARPALKMESNQS
FT                 GHSQRSNMAASGSVKRAPSGNTNPFKKSQRLYHLEAPTDVPCSSNDEDTVQ
FT                 ATNRAPTYEVSDQSVEAGLLGYSSQADESDQTGEQLAQLDEGQVNFMTNAS
FT                 LAYHI"
FT   CDS           join(3067..4803,4724..6076)
FT                 /product="Gypsy-6_DMo-I_2p"
FT                 /translation="GASKFYDECLSSVPYIKYGTCDGAKLQFLIDTGANKN
FT                 FICPRVATGCTDLPKPFLVHSAGGSIPIRQQLTGSFFNSIGKSTPLTFYVL
FT                 PGLQSFDGIIGDDSLRELNAVIDRKRDLLTIDPGVKIPLFAKKSRSVNILL
FT                 DDIHSDEIRKALDLLLEEFEDVFQPLTPGRTVKTTVRAEIRTTTQEPIYSK
FT                 IYPYPAHMREEVERQIKELEKEGIIKPSKSPYNSPIWVVPKKPKPNGEKQY
FT                 RMVVDFKRLNAVTIPDAYPIPDITSTLASLGAAKYFTTLDLTSGFHQVPMK
FT                 ETDMQKTAFSTLNGKYEFTRLPFGLRNAPAIFQRMIDDVLRPFIGKICYVY
FT                 IDDIIVFSDSYENHWEHLRQIFKTLREVELKVNLEKTHFLSTQVEFLGYIV
FT                 TSDGIRPDAKKVEAIKNLAPPSNVKELKNFLGMTSYYRKFIQDYAKVAKPL
FT                 TNLTRGEGAGVKASQSKKVPIELDESCLKAFEELKTLLSSSEVLAFPDFHK
FT                 PFHLTTDASKYALGAVFSQVQDAKDRPIAYISRSLNKTEEIYAANEKEMLA
FT                 IIWALDNLRSYLYGAGSIKIFTDTGAYIFSRKITYALIFMVLVPLKYSQTQ
FT                 GLTYSLGNRNYNAKLNRWKARIEEYNCELLYKPGKSNVVADALSRLPLQLN
FT                 ALDTDSVATVHSSLQDATDFVPHVEAPINVFRNQIIFNSDASAYSLETPFP
FT                 GYTRHIIPLSDDTRRSLSAILKERLRPTVINGVKIPDAYLQSFQESYRESF
FT                 SFFKIRIAQKFVKDIVDENEIMLAIDREHSRAHRNAREVRLQLLDSCYFLK
FT                 MASRIRAFTATCQICKYQKYDRHTNKPFLQPTPIPTRPCEILHIDIFMLEG
FT                 KKYLSCLDKFSKFAKLFPLEPKSALHLREELVKVLHYFSVPKTMVSDNERG
FT                 LLCPTVLNFLKTLGIQVYYAPSQISEVNGQVERFHSTFLEIYRCLKQEYPT
FT                 CTVNELADISVDRYNNSIHSVTQRKPADVFLNRAATMDLQKLLEIKHREYE
FT                 DIRGLLQHKQETANNSKNKNKKNK"
FT   CDS           join(6233..6526,6522..7871)
FT                 /product="Gypsy-6_DMo-I_3p"
FT                 /translation="MPSGGRCVLIKHSHPHVSYTHFCLSPNKKITLFDFQF
FT                 HLDLRKIVSIKKRKKNFIVLVTQQFVHPITTTAITNIDASDSHVQIRRPIG
FT                 DTETGQRVKSRVDGYFNLIHSVNLEEIETAIEATRNEARELNAGQIRVLAF
FT                 HHLEQAQQMLSKLSRVRKVRSIEWLGSAWKWIAGSPDASDWNAILNVRDNL
FT                 VENSNQQYKINDQLFETSRKSLEALNSMIEKVNTIDSNDQAATIVLHKTML
FT                 LESQVGELSRACQFAKAGLVNSNLLDEAEIQALLKEMDSLPYQSAVEATEF
FT                 AKPIIVTNGTMLLYVLALPKVVAKEYQMLVIRPAIRANRQIDANFGKLLVA
FT                 PDETFAITKDCLTIGNTSVCAEEHLTPLSESDCIPRTLKGGNAECHYVTSS
FT                 RRVVELLEDGTLFLTNYNGTIYTEGQSYSLDGTYLVQFANETVTADNKTFR
FT                 SHSHTRLIAMPTVVTNLTSLGYHLNLELIHGLSTRNLNLLQVMRRRLTISS
FT                 TTEIVTIFVVILVIFVFWRKVTHQQTSLETDKDVESNGTQTEDIVTIDHKS
FT                 A"
XX
SQ   Sequence 7905 BP; 2600 A; 1646 C; 1682 G; 1977 T; 0 other;
     ctgcgcccga gcagggacca ctgcgatcgc gtgatgtgtt ataaaataat ataattggtg        60
     ccacaaattc tcaaaataaa agtgtacaaa taatacaatt attgtgtcaa tattatgcaa       120
     aacataaaac gaaacaaaaa aattgttttt aaatcgcata tacaacaaaa gagtgacggc       180
     gaaaaaagaa aaaaaacaaa aacaaaatat aaacaaaaac aagagcaagc aatgaaatgt       240
     gatagtgtca ttcatttttt ttttttttct ttttcgctgt cttcttttgc gctagcgctg       300
     cgtgcaatta atgatgaaaa caaaaaagag taaaaagaaa aaaacaaaaa gcaaaaagag       360
     ctgcatagcg acaagtgtaa tatgacgcaa tggtatgaag aattttttcc catttatata       420
     aagtaaaatc aaatgttaac ataattaaga gaatttgtga gtgctgtagt tataaaaaga       480
     gaaaagaggc tgcgataaat gtgtatgcat tctctgtacc aagagatgcg tgggttcgat       540
     tctcttcgcg gtcttgtatg aaaaaataaa caaatcgaaa aagccggcgg caaatattta       600
     gtgggcagtg cactcataat gtgtgatgtc ggggttcgac tccccgtcgt gcggtgacat       660
     tcgagctaaa ttattacaaa attttttcat gaaatagtgc agttgagacg gtcatggcta       720
     aaaaatatta gtggacattg catattcaat gtcggggttc gactccccgc cattcgacca       780
     caaagctgat gatgacgaca cattttgcga tcgatagtgg tctcagttct agtataagag       840
     ataaccactg tggcagcttc gaactgcaag tggcatttgt agttataaga gataaccact       900
     gtggcagcta tgaactgcaa gtggcatttt taacgaaaaa caaagaaaag aaaaacaaca       960
     aaaacaaaag tgctgtgagt gcaaatgtgt ctcgtgtgaa aaaaggtgtg tggtgatgtg      1020
     ctgtgtgccg ttggaaaggc cttgcaataa aaaagaaaat ttaaaccaga cattgcgttt      1080
     ggctgcccaa cggttcgtgg aatcgtcctt accccagtag gctgtaacaa gttaaaaagg      1140
     ataataaggg cctcccgtta agtacaaact cgccccactt taacgcacgc actatgcaac      1200
     tcacacttgt gcacgaataa agtttctgtt ttcaagtttt aatatgacac gaaagaatac      1260
     cctacaaaaa taaataaata caagaaaaac ccgtaaaata ttggtaatag taataaaata      1320
     aaatattgag aaaaaaataa ataaaaaaat ataataaaat tatttttttt ttaattaaaa      1380
     atgaacaaag gattaaaaaa aaaaaaaaaa aaaatttttt tttgttcttt gttttttgct      1440
     ttgcttctta attgcaactt tattttgata ttttactaat tcaactttgt atcttcaaca      1500
     gatcagagca taaaaaacaa cacattcaca actcatatac acatttagga atatagaatc      1560
     acgttgacac cgggtaagtg acacattgac cccacttggc tatatataaa aaaaagataa      1620
     aaacaagaag aataataaaa ataaaacgaa aaaaaaaaaa aaaaaaaaac taattcatca      1680
     ttatcgtatc attatattat cgtctctaat attattgtat ctcttgttgt cttgatcgtc      1740
     acccgaataa ggaaaaataa taatgtccgc gtccgagagg gaattgtccg aaatgaggga      1800
     gtctctaggt agattcgagg caaccttatc gttgctgtcg aatcagaatg ccgcgcagag      1860
     ggaggaatta aaagaagctt ttgccaagat caactccttg gagggtgacc ttgccaggga      1920
     acgtgaatcc cgcaacccca cggttgaaga ggcgcgaccc ttagttcgtc ctcgcaatgt      1980
     ctttgaccta gcagagtgta ataagattcc ggaatgtgtg aaggatttac aaaccttcga      2040
     aggaggtatg ccagaattcg aatcttgggc caacagaatc gatagtatct tcacggatta      2100
     cgagttgatt agggacaaac gtcagtatag ggccataata acctatatta ggcagaaggt      2160
     gagaggtcct gcggataagg ctcttacctc ttacggggta caggatgacg actggccaga      2220
     gatgaagcgc gtactagcac tgcattatgc agataagcgg gatctaagca cgctagagtt      2280
     tcagttgagc aagatgttcc agggcaccat gagtgtagaa gatttcttta ataaggtgaa      2340
     cggctacttc tctttgataa tgggcaagct aagaaatggc ccatacacgg ctgaagtttc      2400
     atccgccttg acggatattt atagaaagaa agctctagat gccttcatag gtgggttgaa      2460
     tggcgacttg cctagattcc tgatggtcca taggccaaaa gacctgcctg aggcctattc      2520
     attgtgcaac gaattacaaa atgtttgcat gagagctggg ccagcatttg catcaagaaa      2580
     tgctttctcc gggaattcaa gaccggtggg tccggcacca aacaattcga catttcgtca      2640
     tcctcgacct tttctgaatt cgggtaacgc tggttatgta acacagcagc agggctacat      2700
     gaacaacaat acccctcctc gaccaccatt tactccgaga tatggagtac aaccagcaag      2760
     acctgcactg aaaatggaat ccaaccagtc agggcactcc cagaggtcga acatggctgc      2820
     gtcgggcagc gtcaaaagag ctcccagcgg taacaccaat ccatttaaaa agtctcaacg      2880
     actttaccat ttggaagccc ccactgatgt cccgtgttca tctaatgatg aagacactgt      2940
     acaagcaact aatcgtgcac caacttacga ggtgtcagat caatcagttg aagctggtct      3000
     gctcggatac tcatcacaag cggatgagtc ggatcagact ggtgagcaat tggcacagct      3060
     agatgagggg caagtaaatt ttatgacgaa tgcctctcta gcgtaccata tataaaatat      3120
     ggtacgtgtg acggggcaaa gctgcagttt ctgatagaca ctggagccaa caagaacttt      3180
     atttgcccca gagtagccac cgggtgtacc gacctgccaa aaccatttct agtacactcc      3240
     gcgggtggta gtatccccat tagacaacaa ctaacaggtt cttttttcaa ttcaataggt      3300
     aaaagtactc cccttacttt ttatgtactt ccgggtttgc agtcgtttga cggaattata      3360
     ggcgatgaca gtcttagaga gttaaatgca gtcatagata ggaagcgaga tcttctcaca      3420
     atagacccag gggtaaagat tccgttgttt gccaagaaat cgcgatccgt aaatatccta      3480
     ttggatgaca tacactcaga cgaaatacga aaggcacttg atcttctact agaagaattt      3540
     gaggacgtat ttcagcctct cactccaggc cgcacggtca agacaacagt gagagcggaa      3600
     atacgtacca cgactcagga gcctatttac tccaagattt acccataccc agcgcatatg      3660
     agggaagaag tagagagaca gattaaagag ttagagaaag aaggtataat caaaccatct      3720
     aagagccctt ataattctcc aatttgggtg gttcccaaga aacctaaacc taacggagag      3780
     aaacagtatc gcatggtggt agatttcaaa cgccttaatg cggtaaccat accagacgcg      3840
     tatcccatac ctgacattac gtcaacttta gccagtcttg gcgcggcaaa gtatttcacg      3900
     acacttgacc tgacttcagg atttcatcaa gtgccaatga aagaaaccga tatgcaaaag      3960
     acagcattct cgactctaaa tggcaaatat gagttcactc gattgccttt cggcctgcgg      4020
     aatgcccccg ccatatttca gcgcatgatc gacgatgtgc tcaggccgtt tattggtaaa      4080
     atatgctacg tttatataga cgatataatc gtcttcagcg atagctatga aaaccactgg      4140
     gaacacttgc gacagatttt caaaacactt cgtgaagtgg agttgaaagt taacctcgag      4200
     aagacacatt tcttgtctac tcaggtggag ttcttaggtt atattgttac ctccgacggt      4260
     ataagaccgg atgccaaaaa agttgaagct atcaagaatt tagcaccgcc ttctaacgtc      4320
     aaagaactaa agaattttct tggtatgact tcctactaca ggaaatttat tcaagactac      4380
     gcaaaagtcg caaagccact aaccaacctg acaagaggcg aaggcgcagg agtcaaagct      4440
     tcacagtcaa agaaagttcc catcgaactt gatgagtcat gtttgaaggc gtttgaagag      4500
     ttaaaaactc tactctcatc ttcagaggtc ctagctttcc ctgactttca taagccattc      4560
     cacctgacta ccgatgcatc caaatatgca ttgggtgcgg ttttctctca agtccaagat      4620
     gcgaaggaca ggccaatagc gtacatttct aggtcgctaa ataaaactga agaaatctat      4680
     gccgccaacg aaaaagagat gctggcaatc atctgggcct tagataactt acgctcttat      4740
     ctttatggtg ctggttccat taaaatattc acagacacag gggcttacat attctctagg      4800
     aaataggaac tataatgcta aattaaatag gtggaaggca cgaattgaag agtataactg      4860
     cgagttactc tataaacctg ggaagtctaa cgtagtggcg gacgcacttt ctcgcctccc      4920
     acttcagtta aacgcactag atacagattc tgtggccacg gtacatagct cgctccaaga      4980
     cgcaacggac ttcgtacctc acgtggaagc tccaatcaac gtctttagaa atcagataat      5040
     cttcaactcc gatgcgagtg cttattctct ggaaacgcca tttcccggct ataccagaca      5100
     tattattcct ctaagtgatg acacaagacg atctttaagc gcgatactga aggagcgctt      5160
     acgtccgaca gtcataaatg gagtaaagat tcctgacgct tacttgcagt cttttcagga      5220
     gagttacaga gagtcatttt ccttctttaa aatcagaata gcgcaaaagt tcgtcaaaga      5280
     catcgttgac gaaaatgaaa ttatgttggc tatagaccgg gaacactccc gagctcatag      5340
     gaatgcgaga gaggtcagat tacaattatt agacagctgt tacttcctga aaatggctag      5400
     tcgtattagg gccttcacgg ccacttgcca gatttgtaaa tatcaaaaat atgaccgaca      5460
     tacaaacaag ccattcctgc agcctacgcc cataccgact cgtccatgtg aaatactgca      5520
     catagacatc ttcatgttag agggaaagaa atatctcagt tgtttagata aattttccaa      5580
     gtttgctaag cttttccctc tagagccgaa atcggcacta catttgcgtg aagaactggt      5640
     taaagtcctg cattatttct cggtaccaaa gacaatggtt tccgataatg aacggggttt      5700
     actttgccct acagtcctga atttcctcaa gaccttgggc atccaagttt attacgcacc      5760
     ttcacaaata agtgaagtta acggtcaagt agaaaggttt cattccactt tcctagaaat      5820
     ctatcgctgc ctcaagcaag aatacccaac ctgtacggtc aatgaacttg ctgatatttc      5880
     ggtcgataga tacaataact caattcactc tgttactcag aggaaacctg ctgacgtttt      5940
     tttaaatcga gccgctacca tggacctaca gaagctttta gaaataaaac atagggaata      6000
     tgaggatatc cggggtttgc tacaacataa acaagagaca gcgaacaaca gtaagaacaa      6060
     gaacaagaag aacaagtaag aaaagtaaag ataaaaaacg ttttaataaa gaagtagtcg      6120
     aacaggataa cagagttaca ataaagacgc gaacaggtaa actttttcat aagtcccacg      6180
     tgaaaaagtg aggacgctta cataagtaac attactgtat ttttcttctc ttatgccaag      6240
     tggaggacgc tgtgtcctta tcaaacactc acacccacac gtttcatata cacatttttg      6300
     cctttctcca aataaaaaaa ttacattgtt tgattttcag tttcatttag acttaagaaa      6360
     aattgttagc ataaaaaaaa ggaaaaaaaa ctttattgta ttagtaactc aacagtttgt      6420
     gcatcccatt actaccactg ctattactaa catcgacgcg agcgattcgc atgttcaaat      6480
     acgacggccc attggtgaca ctgaaacagg gcagcgggtg aagagttgat ggttatttca      6540
     acttgatcca cagtgttaac ttagaagaaa tagaaacagc catcgaagca acgaggaatg      6600
     aagcgcggga actgaacgcg ggacagatcc gagtcctggc gttccaccat ctggagcaag      6660
     cacaacagat gctctcgaag ctgtcgagag taaggaaggt tcgctcaatc gaatggcttg      6720
     gatcggcatg gaaatggatt gcaggatcgc cagacgcctc agactggaac gctatcctca      6780
     atgtgcgcga taatctcgtg gagaacagca atcaacaata taaaatcaat gaccagctct      6840
     tcgagacatc acgaaagtcc ctggaggcgc taaactctat gatcgagaag gtcaacacta      6900
     ttgacagcaa cgatcaggct gccacgattg ttttgcataa gacaatgtta ctggagagtc      6960
     aagtgggtga actgagcaga gcttgccagt ttgcgaaggc aggcctagta aacagtaact      7020
     tactagacga ggcggagata caggcgctac tcaaagagat ggactctttg ccgtatcaga      7080
     gtgctgtaga agccacggag ttcgcgaagc ctatcatcgt aacgaatggc accatgctac      7140
     tctatgtatt ggcgctgcca aaggtggttg ctaaagagta tcagatgttg gtcatccgac      7200
     cagcgattcg cgcaaacagg caaatcgacg ctaacttcgg aaagttgctg gtggccccgg      7260
     acgagacgtt cgctataact aaggactgcc ttacaatagg caacaccagc gtctgtgcgg      7320
     aagagcacct gaccccgtta agcgaatcag actgtatccc tagaacactg aagggaggaa      7380
     acgccgaatg ccactacgtg acatctagtc gacgcgtagt agagctactg gaggacggaa      7440
     cgctgtttct tacaaactac aatggaacca tttatacaga aggacaaagc tacagcctcg      7500
     acgggacgta tcttgtccag ttcgcaaacg agacggtaac tgcggacaac aaaacgttca      7560
     gaagccactc gcacacgcgc ctgatagcca tgcccaccgt ggtcacgaat ctaacaagtt      7620
     tgggctacca cctcaacctg gaactgatac acgggttaag tacaaggaac ttgaacctgc      7680
     tccaggtaat gcgaagaagg ctaacgatat cgtctacaac ggaaatcgtg acgatttttg      7740
     tagtgatatt agtaatcttc gtattttgga gaaaagtcac acaccaacaa acatctctag      7800
     aaaccgacaa agacgtggaa tccaatggta ctcagacgga ggacatcgtt acaatcgacc      7860
     ataaaagcgc ttgatctgcg ggacgcagat atttaagggg ggagg                      7905
//
ID   Gypsy-6_DMo-LTR repbase;    DNA;    INV; 660 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-660
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 660 BP; 167 A; 199 C; 147 G; 147 T; 0 other;
     agttaacacc agccagtgcg cagcactgcc tctcttcccc tgcccctgcc ctcaacgtct        60
     cgaatatctg accgcttcgc cccacgcctt gactacccgc ttgacaacac attatgctga       120
     cgcctaagcg gctgcgccac ttcgacccag ctattgcaac acagttgcat ttacgctgac       180
     gctcgaggtg ccagcggaaa ccaatgcgca gtttcagcgg cggctattag aacctactta       240
     cgccgacgcc actgctgcca tggggtcaac gacgccaaga accgctgatg cgacggcagc       300
     caaaatacgc gctgacgttg cagacgccgt tgttccgctg ctgctgctct gccactgcga       360
     taagctcgcc aggcctggaa gaggaactgg agagctgacc actggccaac tgaaagggca       420
     gttccagacg actcgtcgaa tcaatcagac ctaactaacc aaaactaaca aaacatttga       480
     tcattaaaag ttataacgtt tatttgaagt cattttgagt tcttatttgt gttcccaacc       540
     aacttctact agtaagtata catcgagatg tggtcgtcgc ccgtgcaata cggcgacagt       600
     accttcaatg aaccctagga tgcgactgtc gatccttcga acgacacgag cattcgttaa       660
//
ID   Gypsy-6_DPer-I repbase;    DNA;    INV; 5904 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DPer_;
KW   Gypsy-6_DPer-LTR; Gypsy-6_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5904
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1508-1508 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1215..2609
FT                 /product="Gypsy-6_DPer-I_1p"
FT                 /translation="MENPDNEPEPAPAPKCQLCGKTLASAPTLKTKCSHEF
FT                 HKTCIESHVKTHTTCPTCKTLCVDRSTPHNTRSQAKQNEAAAITAERVSSM
FT                 VTQAISTMQNEVVAQLTDKMAQIIQSSIAAHFQETGNSIPQGNRRGEADNP
FT                 VQQNRDREVGETFRQGLNSQYSAQFPSYDRPSSAVSDLSQRPDKVAHILNS
FT                 WKLRFNGTQEGLSIDNFLYRVEALTHQTLEGNFPVLCSNASLLFDGKARDF
FT                 YWRYHKTSGSMRWDRLCQALRKQFRDSRTDVDIREAIRDRKQKEKENFDSF
FT                 HDALIQLMDDLETPMSEKAIVETLRRNLRPEIRHELLNVQIDSVERLREVC
FT                 RRREGFLDDVRRSHGYQKLIPFRKQVAELVGEAQLEEASEFSDVEEEDEVA
FT                 AVALICWNCRKEGHRYHDCDSKRKIFCFGCGAPNKYKPSCSKCQKNGKVNT
FT                 QPRQPVSVQRKQSSAEAKSQ"
FT   CDS           2519..5827
FT                 /product="Gypsy-6_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="QVPKKRQSEHPASPAGQCSAQAVECRGEIPVGILKTT
FT                 AQLPSEKSESDIHQALVWPQLVHARSHSLFTNDQPSNKSLTRSARRMRAFR
FT                 QAAKAINCIRYKQKDKRPYAEVRLLDQTVLGLLDTGAAISVIGGKLAERVI
FT                 QSRIPFKRGVLNASTADGRRQEVVGRLRTPVQYKGAVKDLELHIIPSLSQD
FT                 LYLGIDFWSSFDLLPPSMSLAEIVHEPQNLSRGEMDQLQATINLFPSFSVS
FT                 GLGKTALLSHSIDVGDAKAVKQRHFPVSPAVEKLLYAEIDRMLSLGVIEES
FT                 DSAWSSPVVLVQKPGKVRLCLDSRKVNAVTKKDAYPLPQIDGILGRLPKAM
FT                 FISSLDLKDAYWQVPLEPSSRDKTAFTVPGKPLYQYKVMPFGLTNASQTMT
FT                 RLMDKVIPASLRNEVFVYLDDLLIVSDSFESHRRVLSEVASYIKAAGLTLN
FT                 VEKSKFCMKSVRYLGHIVGEGVIRTDPDKISAMSDFPLPKSLKSLRRFLGM
FT                 VGWYRKFISNFASVAAPLTDLLKPRQKFSMTPAGQEAFEKLKEMLCSAPVL
FT                 RSPDFSKPFYVHCDASKTGVGGVLVQKTPEGDEYPIAFVSKKLNKAQKNYS
FT                 VTEQECLAAIVCINRFRAYIEGHEFTVITDHASLKWLMSQTDLHSRLARWA
FT                 LKLQSFSFKIEHRSGRLNVVPDALSRVNEEEVATLDASNGLLVDLESPEFK
FT                 AEDYVEIVERVRANIDKLPDLKIVDNLLYRRSDHATGEVLHDVFIWKLWIP
FT                 QGLVVDVLRNAHDNPLASHGGIHKTLERIRRYYYWPGLVADVKKYIQACDV
FT                 CKTTKAPNTIQRPKIGIAPESQRFFQKLYVDFLGPYPRSRSGHIGIFIVLD
FT                 HYSKYVFLKAVKKLTADVVVKYMQQDLFHAFGVPETIVSDNGTQFKSEAFQ
FT                 KLLREYKVSHTLTALYAPQANASERVNRSVIAAIRSYVREDQKDWDEHLSS
FT                 ICCALRSAVHASLNATPYYMVFGQHFITSGATYKLLRALRVMDDRSAVFSR
FT                 EDSLDLVRSKALEVMKKQNDKNERQYNLRSRDISYNVGQEVFRRNFRQSNF
FT                 QSGYSAKLGPAFLKARVKKKIGQAYYELEDLQGRYVGRFHAKDLRQ"
XX
SQ   Sequence 5904 BP; 1603 A; 1237 C; 1526 G; 1537 T; 1 other;
     tttatgaatc atagatatag tattataact aaaaattggc gcccaacgtg gggccacacc        60
     tattcaggtg tgacaccatt aacactgtga catccttttt ttttgttttt aaaacttccc       120
     gattcagcat agacggcatt gaccaaaatt gtttctctgg aagtggtcat tgctcaagaa       180
     taccttcttt tctcaacacc aagtagaggg ctcgtcagtc gattcggaaa acggaagcag       240
     aagttttgac ttttcatccg gccacgtctg aggagcgttt cgaaaagtgc atcgatctta       300
     ataataccct actttttctg aggcaggagc cttaaacatg gtctttcggg cgcataggac       360
     tgcagaggga atctcgttta cttacggaac cctgcccacg gctgaaggac tgtgcggaag       420
     gcttagccgt tgctgctgat gagctttagc gcgttggaca tactcggatt aatcttgatt       480
     atagaattcc gttggccacg agtgaaatca gaagcagcat gctcatttca agtgtagagt       540
     gccgagccga ggtgtttgga caacagcggc gcgaatcaaa gcagcagctg gccacggctc       600
     gcgcatgcag ttgttgttgg ttttaattag acagcgacaa gtgcaaggcg tctgcgcgcg       660
     tacacattct tttcattttc ttttgtgctt aggaattggg gtctcaatta gcatagggtc       720
     cgtttcgcat ggggattagc tatgcgtaag gcaaaaattt ttatgacttt attttatcgt       780
     atcatattct ttgcgctcta ttcttgtggt ttacattcca tgtgtgttat ttggtagggc       840
     tgttgatttg ctagctctct cgctgtacaa gggaagcgag acttgagaac agctgtggcg       900
     tttgcagggc cattgaccct aagttggcaa cgtaggaagc tatgaattat aacacgagga       960
     atcagttctc tttgtaattt gagttcacgt aaaattacct attatttttg aatttttaag      1020
     tcatcttagg tttgctagca taagttatct gacttttaac tagaatattt aatttagttt      1080
     tactattaac acatttttaa ctttggtttt gtctgcgttt gataagcaag tgtttaggtt      1140
     ttgtcgtgta gtttttgtgg ggcatatttt tgtcaggaca gttaggaatt aagtttgatt      1200
     tatttctttt tacaatggaa aaccccgata acgagcctga accggctccg gcgccaaaat      1260
     gccagttgtg tgggaaaact ttggcttcgg ctcctacatt gaaaacaaag tgcagtcacg      1320
     agtttcacaa aacttgtatt gagtcacatg tcaagaccca tactacctgt cccacatgca      1380
     agacgctatg cgtcgataga agtactcctc ataataccag gtcccaggcc aagcaaaacg      1440
     aggcagcagc cataaccgct gaaagagtta gtagcatggt tacacaggcc atcagcacga      1500
     tgcaaaacga ggtggtagcc cagctcacgg acaaaatggc tcaaatcatt cagtccagca      1560
     tagcagcaca tttccaagag actggcaata gtattcctca agggaataga cgtggggaag      1620
     cggataatcc ggtccaacaa aatagggaca gagaagtggg ggaaacattc cgacaggggc      1680
     tgaatagtca gtattcagca cagtttccga gctacgaccg tccaagcagt gcagtctcag      1740
     atctgagtca gcgaccggac aaagtcgccc atatcctcaa tagttggaaa ttacgtttta      1800
     atgggaccca agaaggattg agcattgata actttctcta tagggtagag gctttgacac      1860
     atcagactct tgaaggaaat tttccagttc tttgcagtaa cgccagtctg ctttttgacg      1920
     gaaaggccag agatttttat tggcgttacc acaagacttc cggatcgatg agatgggacc      1980
     ggttatgcca agccctaaga aagcagttta gggattctcg aaccgatgtg gatatcagag      2040
     aagcgataag ggacaggaag caaaaagaaa aagaaaattt cgattccttc cacgacgccc      2100
     tgatacagct gatggatgat ttggaaactc ccatgtcaga gaaagcgatt gtggaaactt      2160
     tacggcgcaa tttgcgacct gaaattagac atgagctmct gaatgtccaa atcgactccg      2220
     tagaacgttt gagagaagtc tgtcgtagaa gggagggttt tctcgacgac gttaggcgga      2280
     gtcatgggta ccagaaattg attcctttcc ggaaacaggt tgcggaattg gtaggggaag      2340
     cccaattaga ggaggcctcc gaattctcgg atgtagaaga agaggacgag gtggcagccg      2400
     tggcactgat ttgctggaat tgccgaaagg aggggcatcg ctaccacgat tgcgatagca      2460
     aaaggaaaat tttttgcttt gggtgcggag cacctaataa atataagccg tcgtgtagca      2520
     agtgccaaaa aaacggcaaa gtgaacaccc agcctcgcca gccggtcagt gttcagcgca      2580
     agcagtcgag tgcagaggcg aaatcccagt agggatactt aaaactaccg cccagcttcc      2640
     gtctgagaaa tcagaatccg acatacacca agctttagtc tggccacaac tagtccatgc      2700
     cagatcccat tcgcttttca ccaacgacca acccagtaat aagtccctca caaggagtgc      2760
     aagaaggatg agagcgttcc ggcaggcggc gaaagcgata aattgcattc gttacaagca      2820
     gaaggacaag cgtccatatg cggaagttcg cctgttggat caaacggtcc ttggtctatt      2880
     ggacaccgga gcagctataa gtgttatagg cggaaagtta gcagaacgcg taatccaaag      2940
     ccgaattcct tttaagagag gagttctaaa tgcttccact gcggatggac ggaggcaaga      3000
     ggtagtggga cgactgcgga caccggtgca gtataagggt gcagtgaagg accttgagct      3060
     gcacattatt ccatcgctca gccaggacct gtatttaggg atcgattttt ggtcgagttt      3120
     cgatttatta ccacccagca tgtcgctggc agagatagtt catgaaccgc agaacctcag      3180
     ccgaggggaa atggatcagt tgcaagcgac catcaattta tttccttcgt tttccgtttc      3240
     cggtctagga aagacggccc tgctttcgca ttcaattgat gtaggtgatg caaaagccgt      3300
     gaagcagaga cacttccctg tatctcctgc ggtagagaaa ttgttatatg cggagataga      3360
     tcggatgctc agcttagggg tgatagagga atccgatagt gcgtggtcat caccggtagt      3420
     attggtgcag aagccaggga aggtgaggct atgtttggat agtaggaaag ttaacgcggt      3480
     gaccaaaaag gacgcgtatc cgttaccaca aattgatggg attttaggac gtcttcctaa      3540
     ggcgatgttt atttcgagcc tggatcttaa ggatgcctat tggcaagttc ccttagagcc      3600
     gagctcacgc gataaaacag cgttcacggt tccgggcaaa cctctctacc agtataaggt      3660
     gatgcctttt ggtctcacta acgcttcgca gaccatgaca aggctgatgg acaaggtaat      3720
     tccggccagt ttaagaaatg aagtttttgt gtacctggac gaccttttga ttgtgtcgga      3780
     cagttttgag tcacatcgga gggtgttgag tgaagtggca agttacataa aagcggcagg      3840
     gttaacgctg aatgtggaga aaagcaagtt ttgcatgaag tcagtgcggt atttggggca      3900
     tatagtaggt gaaggggtga ttcgtacaga tccggataag atttcggcta tgtccgattt      3960
     tcctttgcca aaatccctaa agtctctgcg tcgcttccta ggtatggtag gctggtaccg      4020
     gaagtttata agcaacttcg catcggtagc cgcgcctctc acggacttgc tcaaacccag      4080
     acagaaattt tcaatgactc cagcgggtca ggaggctttt gaaaagttga aggagatgct      4140
     ttgctcagcg ccagttttgc gtagtcctga ttttagcaaa ccattctatg ttcactgcga      4200
     cgctagcaag acaggcgttg ggggagtgct ggtgcagaag acaccggagg gggacgaata      4260
     tccgattgcg tttgtatcga aaaaactcaa caaagcccaa aagaattatt cggtcaccga      4320
     acaagaatgt ctggccgcaa tagtttgcat aaataggttc agagcttaca tcgaggggca      4380
     tgaatttact gtaatcactg atcacgcctc cttgaagtgg ctcatgtcac aaaccgactt      4440
     acactcacgt ctagcccggt gggcattaaa gctgcagagt ttctcgttta aaatcgagca      4500
     tcgtagcggc aggcttaatg tggttccgga tgctctttct cgcgtaaatg aggaggaagt      4560
     ggcgactcta gacgcgagca atgggttgtt ggtggatttg gaatcgccag aattcaaggc      4620
     agaagattac gtggagatcg tagaaagggt tagggccaat attgataagt tgccagatct      4680
     caaaattgta gataacttgt tgtatcgtag gtcagatcac gcaacaggag aggtgctaca      4740
     tgatgtgttc atttggaaac tctggattcc tcaagggttg gtggttgatg ttttgcgtaa      4800
     cgcgcacgac aatccactgg cttcccatgg aggcattcac aaaaccctag aaaggatacg      4860
     gcggtattat tactggcctg gtttggttgc cgatgtgaag aagtatatcc aggcttgtga      4920
     tgtctgcaag actaccaagg cccccaatac aatccagaga ccgaagattg gaattgcgcc      4980
     cgagtcacaa cgtttcttcc agaaattata tgtagatttc ctggggccat atccccgttc      5040
     aagaagtgga catataggca tctttatcgt cctcgatcac tattctaaat atgtgtttct      5100
     taaggcagtg aagaagttga ccgcggacgt ggtagtcaag tacatgcagc aagatctttt      5160
     tcatgctttc ggggttccgg agacaatagt atccgacaat ggcacacaat ttaagtctga      5220
     ggcattccaa aagctactcc gggaatataa agtttcgcac actctcacgg ccctgtacgc      5280
     accccaagct aatgcttccg aacgtgtaaa tcgctcggtg attgcagcaa tccgatctta      5340
     cgtgcgcgag gatcagaagg actgggacga gcacctcagc agcatttgct gcgcattgcg      5400
     ttcggcggtg catgcaagtc tgaatgcaac tccttattat atggtgttcg gacagcattt      5460
     catcacttcc ggggcaacat acaagcttct gagagcattg cgggtgatgg atgacaggtc      5520
     agcagttttc tcgcgggagg attcattaga cttggttcga agcaaggctc tagaagtcat      5580
     gaaaaaacag aatgataaga atgaacggca gtacaactta cggtctagag acatatccta      5640
     caatgtcggc caggaggtgt tccgaagaaa tttcaggcag agcaattttc agtcagggta      5700
     cagcgcgaag ttgggtccgg cctttctgaa ggccagggtc aaaaagaaga tagggcaggc      5760
     ctactatgag ttagaggatt tgcagggtcg ttacgtagga cggtttcacg cgaaagatct      5820
     tcgtcagtaa gccaactgct tcaagctctc ctgttatcat tcttgggagt gtgaccccca      5880
     agcctgatct ttcggggggg cttt                                             5904
//
ID   Gypsy-6_DPer-LTR repbase;    DNA;    INV; 1868 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DPer_;
KW   Gypsy-6_DPer-LTR; Gypsy-6_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1868
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1509-1509 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1868 BP; 512 A; 385 C; 510 G; 457 T; 4 other;
     tgtagcgctt gtagcaggga atgctgagtt tttgtggcgc catctaacgc tcagagtggc        60
     aggcgaacga caggtcaagg gagaaccaaa aagacggtaa caggtcaaaa cgtcaggcta       120
     tctctgttga aaatgcatcc agggacctgt tagaggattt gccgccagaa cgttggcgtc       180
     cctatcggct attccctcgt gaaagtcaat tgagtcggtt gcgtatcggt ccgacggaag       240
     ggaaaaacca agaatttagt gaagagaaaa actctaagga aatctaaata gctaaatcca       300
     agattcgact gcgagattct tggttgaagg cgagtgggct attcagtcgt cagaagccgt       360
     atagcgctga gtccggttgg ggtaagtgct gcgggaggag aagagaaggg ctaaaggaga       420
     atatcaaaga gttgtcccat ttgtagtctt ggcgcttagt aaatcgaggt aatcagtgcg       480
     gattcgatcg tccaaggaag ccagccagca gacaacagca gccgcaagcc taacaaagtg       540
     gcgtttaaac ttttgggact gtctggaaag cgctcagcca tcggagaagc gagcgtggaa       600
     gcagagggag aagacatttg ggcagcgctc ggtccccccc aagcggctag cttcccgagg       660
     cgttggcgtc ggcactttag tagtcgagcg cgacgcgaca gataaggagg gcccgtccct       720
     tggtcgcgag cagatcggcg gagagaaagt gttaatctag caccgtcgga gattggccgt       780
     ttggcctttt ctttgctttc gcgtaccctt cacctgcaga agcaggggaa agaatttgtg       840
     ckgttccctt tcgcccagga ggtggaaagg aaacatagat aacagtcggg agaaatagaa       900
     taggaaaaaa agaggaagca acggattgac agagtgattg tattcgtgtt cgtaaatgta       960
     taattaattt tgatctcggt gcggagttaw ttaggagaga attagatttg attccggtag      1020
     tggcttctcg tgactctcgc cgatctgcaa atatgatttc cccctacctt gtgccawttt      1080
     aagtgttctt ccaccacagc agctttaggt attcatcgag gaaagcgctt tcgccgatgg      1140
     agccataaac tggagaaaag gtatgagtgg acttaaattc tgttattaat aaagtacaac      1200
     ttgaaacaag ggaattaggg ccggtcggtg agcgggaggg agaagtgccc actcgaattg      1260
     gcttctgaac attacggagt cagcaagcaa gttagtttgt ccatttcgga cttatttagt      1320
     atatcgtttg tattacacat agccaagtat ttgtaggaat tttacacata tattttcatt      1380
     tagctactct tttaatgtgg gggattatat tatggtattt gcgggtaata ttaktgtttt      1440
     agccagtaag tgaataaact ttataatgta ttaatctacc gttttgcttt cgctggcaaa      1500
     ttccccatgt aggacgtccc ggacaaaggg gccattccgt cattaaatcg aacggtttgg      1560
     aatggccatg gtagggcggg cgacacgacc tcgacaacac cagaggcgga gttgagatac      1620
     ctttccagca caaatccaca attctatcca gggataaaca gtgtctcccg gttaagcatt      1680
     ttcgtcgtga cacgctactt cattcgcggt ataatgcgta taggccacca gcaggagggg      1740
     gggcaagaac atcactccaa tagccgacga gcagaggccg gaaacccaaa gcgtgtgctc      1800
     cccttcgctg aacaacagct agcctggcag gatttatata cacagacgtg cgtaggtgac      1860
     acgttaca                                                               1868
//
ID   Gypsy-6_DRh-I repbase;    DNA;    INV; 3668 BP.
XX
AC   AFPP01028411;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DRh_;
KW   Gypsy-6_DRh-LTR; Gypsy-6_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3668
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01028411; Positions    8628    4961.
XX
CC   Positions [2554-3030] - Integrase core
CC   LTRs are 93% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1759..3258
FT                 /product="Gypsy-6_DRh-I_1p"
FT                 /translation="MEAALIRKPVLKLYNPKLTTEIHTDASKFGFGAVLLQ
FT                 KDLEPGQLHPVMYMSRKTKPCDEKYHSYKLEVLAVITALTKWRVYELGTKF
FT                 KIITDCNAFAMTMKKKEVPLRVPRWAMFLQDYDYEIEHRSGTKMRHVDAFS
FT                 RVACFVLTETVMHRLKEAQMADEWTRAVRSLVENKGYEDYYIANQILFKDP
FT                 DREFIVVLSQMEIEIVQIAHRQGHFSAKKTQDLVDKSYFIPKLRDKVSRVV
FT                 GSCVECIMVNEKMGKQEGYLNPIDKGDKPLVTYHIDHVGPMEITKKKYNYI
FT                 LVVVDAFSKFVWLYPTRSTGVEEVLNCLERQVVTFGNPFRMVSDRGTAFTS
FT                 HLFNEYCDKQKTQHLLIATGVPRGNGQVERSHKIVVPMLSNMSLENPGNWY
FT                 KHFGKVQQLINNIEPKSTKVTPFKLLTGVDMRVVDIAKLKEHVQQSLIQEL
FT                 ADDRDQIRKEARENIQALQGENRLSFDSKRKDEKLYNLNDLVAIRRTEYGV
FT                 GLKL"
XX
SQ   Sequence 3668 BP; 1264 A; 580 C; 929 G; 895 T; 0 other;
     attttggggg ctcaaccgga gatatttgga tccaaactat ttggattaca aactacagtc        60
     attaaactga gttgtgtgtt taaaaactta cttaactttt tgcaacgagg tggtagtacc       120
     agatactaca aaaaatttgg aaagtaacag aaaaactaaa agaatttaca aaggaaaggc       180
     aacattgcaa gaataaaaca gttgtgaaat tcgattttgt gagacgcaaa agaatttgca       240
     gaggaaccga cgcaaagagc actgacgtgg gcaacgtaga aggcgattga tccacgagta       300
     ccaaatctgg aagcaacgca atagctttgt ggtgcacgtc aacaagcaag aagcaggatt       360
     gtggcagtgg tcatctggac aagaggcaag gcctgaagca gttacggtag caggcagaag       420
     gatcgcagaa gttgtgcgtc aggagaagac gagagcacag gcttcaaagg ctggtcaaag       480
     caagataagg aagcggataa gtgtacggaa ggagatcggc ggtcagagag caggaagatc       540
     tgtagaagta ccaattgcgg gtttgcagcg aaaagtggac aagaggcaag gcctgaagca       600
     gttacggtag caggcagaag gatcgcagaa gttgtgcgtc aggagaagac gagggcacag       660
     gcttcaaagg ctggtcaaag caagataagg aagcggataa gtgtacggaa ggagatcggc       720
     ggtcagagag caggaagatc tgtagaagta ccaattgcgg gcttgcagcg aaaaaaagag       780
     cagtactggt gacctggcga ggctggaaga cgaattcaag gccgtgtgca tcagtcaacg       840
     agaagtccag ctgtattggt gataccacag gaagaataca aaataatatt tgtgggctgg       900
     cgaaaagtta agcttatgca gtattggtga gtgacaggaa ggcgatacaa gatatttggc       960
     gatttggacg tgcagaaatt ttcggaaaga agaaaaataa gacgaagaga acgagacaaa      1020
     ttgccaagaa gacaatataa aaattttttg gattgctgtt ctgcaatcgt gctgttgcaa      1080
     cgtagagtta agttttcatt cttgcataaa ttcaagcagt gcataaagct gctatgttaa      1140
     tgtaacgtaa taacgtaagt tggcgagttt tcgttttgat atacatattt tatttgataa      1200
     gcattatatt acttttcttt ttttaaagga ttatatttaa gtctttaaaa tgaacaggca      1260
     agagattttg gcactgcttg tggcagaaca acgcgaaaaa ttgaaaagag ataataagtg      1320
     ttttagatgc aaccaaccag ggcacagagc agctcagtgc aagtatgaga tggtagctaa      1380
     acaagaaaag acaacaaact tagtacagac gaaagacagg gcgaggccaa caagcacgtt      1440
     tacgtcttca ggataggagt taaagtacat ttaatttaga aaagttgttt ttaagggatt      1500
     gatagatacg ggagccgatt tgtgcttaat gcgtcgcaat gttttctcaa aggtcagagt      1560
     ggaaaaatga acaggaaacg aaaaatgttt gacaggtatc ggtgaaagcc aaattgtgac      1620
     ttttggaagt gtgacaatcc cagtacaaat agatggtatt aatctctgtg tagaatttgt      1680
     agcttttgaa gctattatag gtaaaactct cttagatagt gtggatatga agataacaaa      1740
     gcaggttcca ttcgaacaat ggaggcagca ttgattagaa aaccagtgct aaaactgtat      1800
     aatcctaaat tgactactga aatacacacg gatgcgtcca agtttggttt tggggcagtc      1860
     cttctgcaaa aggacctaga acccggtcaa ctacaccctg ttatgtacat gagtcgtaaa      1920
     acaaagccat gtgatgaaaa atatcactca tacaaactgg aagtgttggc agtcattaca      1980
     gctttgacta aatggcgtgt atatgagttg ggaacgaaat tcaaaatcat cactgattgt      2040
     aacgcgttcg ccatgacaat gaaaaagaaa gaagttccgt tgcgagtgcc tagatgggca      2100
     atgtttttgc aagattatga ttacgagata gaacatagat caggcacgaa aatgaggcat      2160
     gtagacgcgt ttagtcgagt tgcttgtttc gtattgacag agactgtgat gcacagatta      2220
     aaggaagctc agatggcaga tgagtggaca agagccgtcc gaagcctggt tgaaaataag      2280
     ggatatgagg attattacat cgccaatcaa atattgttca aagaccccga ccgagagttc      2340
     atagtagtct tatctcaaat ggaaattgaa atcgtacaaa ttgctcatag gcaaggccat      2400
     ttttcggcga aaaaaacaca agacttggtg gacaaatcct attttattcc aaagctgaga      2460
     gataaagtat ccagagtagt aggcagttgt gtggagtgta ttatggttaa cgaaaaaatg      2520
     ggaaaacagg aaggatattt aaatcctatt gataaggggg acaaaccttt agtcacttat      2580
     cacattgatc atgtgggacc aatggagatc accaagaaaa agtataatta catcctagtt      2640
     gtcgtagatg cattttcgaa attcgtttgg ttgtatccga cgcgcagtac aggagtcgaa      2700
     gaggtgctta attgcttaga gaggcaagta gtaacctttg gtaatccgtt taggatggta      2760
     tcagataggg gtacagcgtt cacctcgcac ttatttaatg aatactgcga caaacaaaag      2820
     actcagcatt tattaatcgc tacaggtgta cctcgtggta acgggcaggt cgaaagaagt      2880
     cataaaattg ttgtgccaat gttgtcgaat atgagcctag agaatccagg aaattggtac      2940
     aagcatttcg gtaaagtgca gcaattaatc aacaatattg agcctaagag cacaaaagta      3000
     actccgttta agttgttaac aggtgtcgat atgcgtgtgg ttgacatagc gaaattgaaa      3060
     gaacatgtac agcagtcttt gattcaggag ttagccgatg accgagatca gatacgcaaa      3120
     gaagccaggg aaaatatcca agccctacag ggggaaaaca ggctatcctt tgactcaaag      3180
     aggaaggacg aaaagctcta caacttgaat gatttagttg cgatcaggcg tacggagtat      3240
     ggtgttggtc taaagctata agaaaaatat cttggatctt ataaggtagt taaagttcac      3300
     aaacatggca ggtatgatgt tgaaaaagtg ggagatggcg aaggtccttt gaaaacatcc      3360
     actgtagctg agtttatgaa gaagttcggg acaaacatca cgtcaggatg gtcgaatgta      3420
     ggaatcagga ataagccaga agagcaagta gggagagaga caagaagcgg ttgtcgcttc      3480
     taataaagta taccgagaac gcgataccga taccaagtat accgagaacg tgataccgat      3540
     accaagtata ccgagagaat cgatagagta gaactaaaga gtcagtcggt gtcaagatct      3600
     caagcgtcac gcatgcacag aagtttaagt tttgtttgtt agctcattaa agttaaaacc      3660
     agaatatt                                                               3668
//
ID   Gypsy-6_DRh-LTR repbase;    DNA;    INV; 120 BP.
XX
AC   AFPP01028411;
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DRh_;
KW   Gypsy-6_DRh-I; Gypsy-6_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-120
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Direct Submission to RU (11-DEC-2011).
XX
DR   Genome; AFPP01028411; Positions    4960    4841.
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 120 BP; 37 A; 28 C; 22 G; 33 T; 0 other;
     tgtaatcgga taccaaatga taataatcaa taaacattat aataatacat cacttcgtcg        60
     tctcaagagt tgttcgcatc actgcggaat tcctggggcc acaatcctgg ggcccttgca       120
//
ID   Gypsy-6_DSe-I repbase;    DNA;    INV; 4968 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DSe_;
KW   Gypsy-6_DSe-LTR; Gypsy-6_DSe-I.
XX
NM   Gypsy-6_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4968
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-4968
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           895..1587
FT                 /product="Gypsy-6_DSe-I_1p"
FT                 /translation="MDRVEILALRVDDLRNKLSELNLQTSGTKSILQQRLL
FT                 AHYRLNNEEQNISDDESVATAPMMTNENNRSWFTLKDVEGSISEFSGTIGS
FT                 VDVDQWINEVEECGSTVQWNQLQMFVYAKQLLRGAARSFVKSQQNIRSWEI
FT                 LKTVLLDEFEVKVSSAEIHRRLNRRQKKKDESLHEFLYALMEIAKPAKLED
FT                 ESIIDYFISGIQDSPANKVVLYQAKTLKELKLSLDVYKKSL"
FT   CDS           1568..4966
FT                 /product="Gypsy-6_DSe-I_2p"
FT                 /translation="MFTKKVCSSSKSLNKPGSFFDKQSSESKKINSDNKTR
FT                 KCFKCGDDTHLLKDCRKKDFVCFKCNQPGHRASECKIDGKVKQDQNTNVVQ
FT                 DRKEELKPLSIFTPSGLELKTVQYKSMMFQGLVDTGADLCLIRRSVYTKLG
FT                 RNKLTGLAKCLTGIGDSQVLTFGSFVISVEVDGIDMQVEFHVVPDEDMGFD
FT                 SILGRTILNSVDMKVTKGGTEFISRVVNQNKVESQRIQPLYKGSCAELFVE
FT                 FKSMCMLGVEQADILDEVDLSHLSSVQKEKALSLIGDYKPIRNCSTPVKMK
FT                 ILLTDDLPVFQQPRRLAECEQKIVDDQVQEWLRDKIIKPSVSEYASPVVLV
FT                 SKKNGKKRLCCDYRKLNEKIIRDHFPMPQVDVVIEKLQSALVYTTLDLTNG
FT                 FFHVPVELESQKYTSFVTQKGQYEFLYVPFGITNSPAVFTRFIMAVLRELI
FT                 NSGDVVVYMDDVIVPSKNVCEGLVKLEKVLSVASENGLKINWSKCQVLQKK
FT                 VNFLGYIVEGGTIKPSGEKTSAIVNFPLPNDKKGVQRFLGLTSYFRRFVKD
FT                 FAVTAKPLSDLLRQNTKFKFDVLQKVAFEQLKVALTSNPVLKLYNPKLETE
FT                 IHTDASKYGFGGVLLQKDPEDCLFHPVQYMSRKTNQCEEKYHSYELEVLAV
FT                 IGALMKWRVYVLGLKFKIVTDCNAFTMTMKKKDVPLRVARWALYLQDFDYQ
FT                 IEHRSGTRMRHVDALSRVSCFMLSDTVVHRLKQAQLLDEWTKVVRSLVENK
FT                 GYEDFYIENQILFKDPNRELIVVPSQMENEIITIAHKQGHFAAKKTQDLVE
FT                 KSYFIPKLKEKVVRVVDSCVECIIFNSKAGKKEGFLTPIEKGDRPLMTYHI
FT                 DHVGPMEMTSKRYNHILAIVDGFSKFVWLYPTRSTGAEEVISCLERQATNF
FT                 GNPLRIISDRGTAFTAQAFKLYCEEQKIQHLVITTGVPRGNGQVERMHKTV
FT                 VSMLSKLSHESAGDWYKHVSKVQQIINSTPPRSTLVSPFKILTGTEMRLPN
FT                 DLELNLLIKESLVMDLDEERELVRARASENIKQLQTENKRVFDLKRNGEKI
FT                 YKIDDLVAIKRTQYGTGLKLKGKFLGPYKIVKVNKHGRYDVEKLGDGYGPF
FT                 KTSTVAEYMKPRGNSFGSNDVSGGP"
XX
SQ   Sequence 4968 BP; 1644 A; 743 C; 1251 G; 1328 T; 2 other;
     attttggggg ctcgtccgag aaggcccaag ttgtgtatgc ataagtgcga atttaatgag        60
     tgcgagcgag acagaacgtg acgccgcatc gattaaaagg aaaacgacaa cgacgcaaga       120
     ggagtcgcgg tgaagctgaa gcaatgagaa gtcaatcgac gacggcgagc aaaaggtgtt       180
     tgtgacgcag tgtccatgtg aagactttag aagacggagg ccaaaaggtg ttggagattc       240
     cgtatctagt gctcgaagaa aaacggcagc agccaaaagg tgttggagac gctgtgttta       300
     ttcaaagtgc aacggcggtg accaatagtt gaaggccacg ccgtagaaat tgcaagcaga       360
     caattgaaga aaacggcagc agccaaaggt gttggagacg ctgtgtttat tcaaaagtgc       420
     aacggcggtg accaaaagtt gaaggccacg ccgtagaaat tgcaagcaga caattgaaga       480
     agaacggaaa aacgacggtt acggtgtagc agaagaagaa gaacggtgaa gcaatcagaa       540
     aaacgacggt cgcttcagtg gcagaggaag cagaaggaga ataacggcgc aacgaaatac       600
     gccgccacat atacgaaggc gatcgagcgg caacagcgac gagagaggcg aagcaacaga       660
     gaaagaggcg aggcagtagg aacgaaagag gcgaggacaa cgaagaggcg aaaacgacgc       720
     ggcaagttgt gtatcgtttg ctgttaacat agatttaaca gagttggcta agtagttttg       780
     aaaactttaa agagagggta tgttaagtag ttttgcagct tgacgcaaag aaatcaactg       840
     tagattttat ttcgtattga gaattttgta ctgataaatt ttatatcatt tataatggat       900
     cgggttgaaa ttcttgcgct gcgcgttgat gacctacgaa ataagctgtc tgagttaaat       960
     ttgcagacaa gtggtactaa aagcatactg cagcagcggc tccttgctca ctacagatta      1020
     aacaatgaag aacaaaacat ttcggacgat gagtcagtag caactgcacc aatgatgaca      1080
     aatgaaaata ataggtcatg gtttactcta aaagatgtcg aaggtagtat ttctgaattc      1140
     tcaggtacta taggtagtgt tgatgttgac cagtggataa atgaggtaga agaatgtggg      1200
     agtacagttc agtggaacca attacaaatg tttgtctatg cgaagcagct tttacgaggt      1260
     gctgctagat cgtttgtmaa aagtcaacaa aacattcgaa gttgggaaat attgaaaact      1320
     gtattgctag atgagttcga agttaaagtg tcatcagcag aaatacatcg aagattaaat      1380
     agacgccaaa agaaaaaaga tgagagttta catgaattct tgtacgcact gatggaaata      1440
     gctaagccag caaagcttga agatgagagt attatagact atttcattag tggcattcag      1500
     gattcccctg caaacaaagt agtgctgtat caagcaaaaa cattaaaaga gctaaaactt      1560
     agtttggatg tttacaaaaa aagtttgtag ttcaagcaag tcattaaaca agcctggatc      1620
     attctttgat aaacagagtt ctgagtccaa gaagattaac agtgacaaca agacacgtaa      1680
     atgttttaag tgcggtgatg atacccattt gctaaaagat tgtaggaaga aagattttgt      1740
     ttgttttaag tgtaaccaac caggacatcg cgcatcagag tgtaaaatag atggaaaagt      1800
     taagcaggat caaaatacaa atgttgtaca agataggaag gaagagttaa agccattaag      1860
     cattttcact ccttcaggtt tagagttgaa aactgtgcag tataagtcaa tgatgtttca      1920
     aggattagtt gatacaggtg ctgacctttg tcttatacgc agaagtgttt atactaagtt      1980
     gggcagaaat aagttgacag gcttagcgaa gtgtttgact ggcataggtg atagccaggt      2040
     gcttacattc ggtagctttg taatttcggt tgaggtagat ggtatagaca tgcaagttga      2100
     atttcacgta gttcctgatg aggatatggg ttttgattcg attttaggaa gaacaatctt      2160
     aaacagcgtg gatatgaaag taaccaaagg tggcacagag ttcataagtc gagttgtaaa      2220
     ccaaaataag gttgagagtc agagaatcca gccattgtac aaaggatcat gtgctgagtt      2280
     gtttgttgaa ttcaaaagta tgtgcatgtt gggggtggag caggctgaca tattggatga      2340
     ggttgattta tcacatttga gtagtgttca aaaagaaaaa gctttaagtc taattggaga      2400
     ttataagcca attcgaaatt gttcgacacc agtgaagatg aaaatactgt taaccgatga      2460
     tttaccagta ttccaacaac caagacgttt ggcagagtgt gaacaaaaga ttgtggatga      2520
     tcaagttcag gaatggttgc gagacaagat tataaagccg agtgtgtcgg aatacgcatc      2580
     accagtggtg cttgtttcga aaaagaatgg gaaaaaacga ttgtgttgtg actatcggaa      2640
     attaaatgaa aagataattc gtgatcactt tccaatgcct caggttgacg ttgttatcga      2700
     aaagcttcag agtgctttgg tgtatacgac tttggattta actaacggtt tctttcatgt      2760
     gcccgttgag ttggaatccc agaaatatac ctcctttgta acacaaaagg gacagtacga      2820
     atttctgtat gtgccctttg gtattacaaa ctcacctgca gtttttactc gattcataat      2880
     ggcagtctta agggaactaa tcaacagtgg agatgtagta gtatacatgg acgatgtgat      2940
     tgtgcccagt aaaaatgtgt gtgaaggatt ggtaaagctg gagaaggtgt tgagtgttgc      3000
     cagtgaaaat ggattaaaaa taaattggtc gaaatgtcag gtgttgcaaa agaaagttaa      3060
     ctttttgggg tatatagttg agggtggtac tattaagcct tctggagaga agacaagtgc      3120
     tatcgttaat tttccgttgc caaatgataa aaaaggtgtt caaagattct taggattgac      3180
     gtcgtatttt cgtagatttg tcaaagattt tgcagtgact gctaagcctt tgtcggacct      3240
     tttaaggcaa aatactaagt ttaaatttga tgtgctgcag aaggtagcgt ttgaacagct      3300
     gaaagtagcc ttaacttcta atcccgtatt gaaattgtac aatcccaaat tagaaacgga      3360
     aatccataca gacgcttcaa aatatggttt cggtggtgta ttgttacaaa aagacccaga      3420
     agattgtttg tttcatccgg ttcaatacat gagtcgtaag actaaccaat gcgaagaaaa      3480
     gtatcattct tatgagcttg aggttcttgc agttatcggw gcattaatga agtggcgtgt      3540
     gtatgtgttg ggtttgaaat ttaagattgt gactgactgc aacgcgttca ctatgacgat      3600
     gaagaagaag gacgttcctt tgagggtagc taggtgggca ttataccttc aagactttga      3660
     ttatcaaata gaacatcgct cagggacgag aatgagacat gttgatgcgt tgagtagagt      3720
     atcgtgtttt atgctgagcg atactgttgt acatcgcttg aaacaagcac aattactcga      3780
     tgaatggacg aaagtagtga gaagccttgt agaaaataaa gggtatgaag atttttatat      3840
     agaaaatcaa atacttttta aagatcctaa tcgcgagctt attgttgtac cgtcgcagat      3900
     ggaaaatgaa ataattacga ttgctcataa gcaaggacat tttgctgcga agaaaacgca      3960
     agatttagtt gagaaatctt acttcatacc aaaacttaaa gaaaaggttg ttcgtgttgt      4020
     ggacagttgt gtggagtgta ttatatttaa ttcgaaagct gggaagaaag aaggtttctt      4080
     gaccccgatt gaaaagggag atagaccgtt gatgacgtat cacattgacc atgttgggcc      4140
     aatggagatg acgagcaagc gctacaacca cattttagct atagttgacg gtttttcgaa      4200
     atttgtatgg ttgtatccca cccgtagcac aggagcagag gaagttataa gttgtctaga      4260
     gcgtcaggct actaattttg gaaatccttt acggattatc tctgataggg gaactgcgtt      4320
     cactgcacag gcatttaagt tgtattgtga ggagcagaaa attcagcatc tagtgattac      4380
     aacaggtgta cctcgtggaa atggtcaggt tgagagaatg cataagacag tagtgtcgat      4440
     gttgtcgaag ttaagtcatg aaagtgcagg agactggtat aagcatgtca gtaaggtgca      4500
     gcaaataatt aatagtacac cgcctagaag cactttagtg tcgcctttta aaatcttgac      4560
     tggcactgaa atgcgtcttc cgaatgatct agagcttaat ttgttaataa aggaatcctt      4620
     agtgatggat ttggatgagg agagagagct ggtgcgcgca agagcttccg aaaacataaa      4680
     acagttgcag acagaaaata aaagggtttt cgatttaaag cgcaacggtg aaaaaattta      4740
     taagatagat gatttagtag ctattaagcg tactcagtac ggaactgggt taaagttgaa      4800
     aggaaaattt ctaggacctt acaaaattgt taaggtaaac aagcacggaa ggtatgacgt      4860
     agaaaaactt ggagacggct atggaccttt taagacatcg acagtcgcag aatatatgaa      4920
     gccgcgggga aattcattcg ggtcgaatga tgtatcagga gggccgat                   4968
//
ID   Gypsy-6_DSe-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   25-OCT-2011 (Rel. 17.08, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DSe_;
KW   Gypsy-6_DSe-LTR; Gypsy-6_DSe-I.
XX
NM   Gypsy-6_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-289
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
RN   [3]
RP   1-289
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
SQ   Sequence 289 BP; 122 A; 48 C; 55 G; 64 T; 0 other;
     tgtgggaaat gaaccagatc agcgaactaa aatgatcgat aacacagaga gcaagagagt        60
     aacgcgcagt ggcaacgctt attaacggaa agaacaaaaa gaggacttcg agtagaatgg       120
     tgaacgagag cagtcgcaag tttttcaatc gcgctatata cttacgtaac tagagccaaa       180
     caattaaatt ataataagcg agaactattg tcatcaaaca atataaagtg tactataacc       240
     aattgtcatt aaacaataaa gtaacacatt ataatagaaa cttgctaca                   289
//
ID   Gypsy-6_DSer-I repbase;    DNA;    INV; 5159 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5159
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1982-1982 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1078..5157
FT                 /product="Gypsy-6_DSer-I_1p"
FT                 /note="SAP, retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MERSEILALRVEELRRMLSELQLNTTGLKAELQQRLL
FT                 THFGLMDEGESETEGEPVQFRSTVATPTTHHNRVDNQHGQVSQHRSWFTLK
FT                 DVEGSVSQFSGSGVPNIDLWIEEMEDCSATVEWSPLQQYVYAKQLLCGAAK
FT                 MFVRSQRNIKDWESLKLALLQEFGVQVSTAEIHRRLGKRRQQKSESLQEYL
FT                 YALMEIAKPIRLEDESLIEYFVEGIPDARLNKSMLYQARNLKELKWQIEAY
FT                 QKARSSYKPDNKYTLQSSKVFKESVNEKTTESVRKCFRCGDPSHMKRDCPV
FT                 QSKCFKCNQPGHRAAQCKVGTQVKTEERTNVVQAEKIIPKHSHTSCGLEVK
FT                 SVFCSNVEFKGLVDTGAELCLMRRCVFLKLDIGVGSLIGRQRVLTGIGESQ
FT                 VLTFGSFKAPVSIDGIEMWIEFHVIPDEDMKFDAILGTTILENVDMMVTKK
FT                 GTVFSKRVQSVQPAEVQGRESSCMQLMNEFGSLCMFSTEDHKSGLELDHLK
FT                 ENVAVEVQLLVENYKPMKNHRSPVEMKILLTDELPVFQHPRRLAYCDQKIV
FT                 DDQVEEWLREKIIKPSTSEFASPIVLVDKKNGKKRLCCDYRKLNEKIVRDN
FT                 FPTAHMDCVLEKLQGGEVFTTLDLTNGFFHVPVSPESQKYTSFVTMNGQYE
FT                 FMFVPFGITNSPAVFTRFIMAVLREAIRNDDAVVYMDDVIIASKSVEQGLE
FT                 KLKRVLKVAEESGLRINWSKCQILKDRVNFLGYIVELGTIKPGEEKTRAVA
FT                 NFPIPRDKKGIQRFLGLTSYFRRFVENYAVIAKPLSDLLRKEAKFEFKEKQ
FT                 VEAFDKLKTALINGPVLKLYDPSLETEIHTDASKFGFGAVLLQRDKEDSLW
FT                 HPIFYMSRKTKPCEEKYHSYELEVLAVIGALVKWRVYVLGKRFKIVTDCNA
FT                 FAMTMRKKEIPLRVSRWAMYLQDFDYEIEHRSGNKMRHVDALSRVFCFVVT
FT                 DSLIHRLRAAQLSDDWTKAVKSVVETKEYEDFYISNGILFKDPNRELLVVP
FT                 SLMEDEIIRNAHKQGHFSSKKTQELVEKSYFIPKVREKIAKIVESCVECIL
FT                 VNTKAGKQEGFLTPIDKGDKPLVTYHIDHVGPMEVTKKRYNHILVIVDAFS
FT                 KYVWLYPTRSTGVEEVLSCLERQSVLFGNPYRIVSDRGAAFTSHLFKEYCE
FT                 KEKIQHLLIATGVPRGNGQVERMHQIVVPLLSKLSQENPGCWYKQVGRVQQ
FT                 AINNTEPRSTKVAPFKLLTGLDMRVSSNQELKELIGDCLISELQDEREKLR
FT                 EIARQNIQDIQTKNKRAFDSKRKVERKFELNDLVAIKRTQYGTGLKLKGKY
FT                 LGPYKVVKVNNHGRYDVERIGQGEGPYRTKTVAEYMKPFGSNQASGRP"
XX
SQ   Sequence 5159 BP; 1699 A; 845 C; 1364 G; 1251 T; 0 other;
     attttagggg ctcgaccgag gatattgccc agcatttgac aacttgaacc ttaataaaat        60
     ataattaaca aaacactgtg cagtgaggtg gatgacaaat taaaattttg gaactggtta       120
     agagttcggg aaagacacgc aatttggtca acgagaaaca ttgtgcagtg aggtggatga       180
     caaatttaga acattttgga actggttaag agttcggaaa agccacgcaa attggtcaac       240
     gagtgacaga gacagcaagg gacgcgcaaa gaatttcatc acaaagcgta aggaaattct       300
     tcgaaaggcg gaaagcagac acacacatgg gcgagtgaga cggaagcagc gagtgacgac       360
     gacgaaaccg agtggcagcg tctaaatgta gattgcatcg aatcaggctg gtaaagagca       420
     aagattcaag aagcagcgga ttggctggag aaaatagaag caaggcgagg aaaggcaaga       480
     cacttggtgg cgttcgagga acacgcagac aagaacgtgc atgtcaagat tggaacacag       540
     acttggagga agagagctgg aacacgagga tcaagcagca gatcaagcta gagaagatca       600
     ggagttcgac aagcagaggc gaagcgggat aaggtgcgga gcaggagcag tagaacatca       660
     gcagaacctt attggccata gcaaaggcac atggttttgc aagtcttcag aaattggatt       720
     ccaattggag gcattgcgaa gtagtaggta gctgtgtgaa gaagaagaag gcggtggacg       780
     tgaaaagaag cgagacagca cgaggcgaaa cagggtcgtc gcaggctaag tagcagtctg       840
     atcgtatgtg tgaagaagaa ggcgaacgct acagaaggcg gtggacgtga aaagaagcga       900
     gacagcacga ggcgaaacag ggtcgtcgca ggctatgtaa cagtctgatt gtatgtatgt       960
     gtgaagaagc aaaagcagga ctgttagttt gtttacaatt gtatcgagaa agattagagt      1020
     taaaacacaa ttttgtcatc atattaactg taattttcaa caggatattt ttgtaaaatg      1080
     gagagaagcg agatcttggc attgcgagtg gaggaattgc gacggatgct gtcagagctg      1140
     cagttgaata caaccggatt gaaagctgaa ttacaacaac gattgctaac tcattttggg      1200
     ttaatggatg agggtgagtc agagacagag ggtgagcccg tacagtttag gtcaacagta      1260
     gccacaccaa ccacccacca caacagagta gacaaccaac atggccaagt ttcccaacat      1320
     agatcgtggt ttactttgaa agatgtagaa ggaagtgttt ctcagttttc tggctcaggt      1380
     gtcccaaata tagatttgtg gattgaggag atggaagatt gttcggctac cgtagagtgg      1440
     agccctttgc agcagtatgt ttatgcaaaa cagctactat gtggagcagc caaaatgttt      1500
     gtacgtagcc agagaaacat taaggactgg gaaagtttga agttagctct cctacaagag      1560
     ttcggagtgc aggtttctac agccgagatt catcgcaggc taggaaagcg tcgtcagcaa      1620
     aaaagtgaat ctttacagga gtatttatat gccctaatgg agatagctaa gcctatacgg      1680
     ttggaagacg aaagtctaat cgagtacttc gtagaaggta taccagatgc tagattgaat      1740
     aaatcgatgt tatatcaggc tagaaatctg aaagagttga agtggcagat tgaagcatac      1800
     cagaaggcaa gaagctcgta taagccagac aacaagtaca ctctccaaag cagtaaggta      1860
     tttaaagagt cggtcaacga aaagacaaca gagtcggtta ggaaatgttt taggtgcgga      1920
     gatccgtctc atatgaagag agactgtcca gtacaatcga aatgtttcaa gtgtaatcag      1980
     ccagggcatc gagcagcgca gtgtaaagta gggactcaag tcaaaacgga agaaagaact      2040
     aacgtggttc aggcggagaa aataattccg aagcattctc atacatcttg tggtttagaa      2100
     gtaaagtccg tattttgttc gaatgttgaa ttcaaaggac ttgtagatac cggagcagag      2160
     ttgtgtttga tgcgtaggtg tgtattttta aaacttgata taggcgttgg cagtttgatt      2220
     ggcaggcaaa gagttttgac tggaattgga gaaagtcagg tgctgacttt tggcagtttc      2280
     aaagcaccag ttagtatcga tggcatagaa atgtggatcg agttccacgt gattccagat      2340
     gaggacatga agtttgatgc aattttaggc actacaattt tagaaaacgt agatatgatg      2400
     gtcacaaaga aaggaaccgt gttttcaaag agagttcaaa gtgtgcagcc agcagaggtt      2460
     cagggaaggg aaagttcctg catgcagctt atgaacgaat ttggcagcct ttgtatgttt      2520
     agtaccgaag atcataagtc aggcttggaa ttggatcatt taaaggaaaa tgtcgctgtt      2580
     gaagtacagt tgttggtgga aaattacaaa ccaatgaaaa accatcgttc acctgtagaa      2640
     atgaaaattt tgctgacaga cgagttgccg gtttttcaac atccaaggcg tttggcctat      2700
     tgtgatcaaa agattgtaga tgatcaagtg gaggaatggc ttagggaaaa aataatcaaa      2760
     ccaagtacgt cagagtttgc ttcaccaatt gttttggtag ataaaaagaa tgggaagaag      2820
     cgtttatgct gcgattaccg gaaactgaac gaaaagattg tcagagataa tttcccaaca      2880
     gcacacatgg attgcgtttt agaaaaactt caaggtggag aggttttcac aactttggat      2940
     ttgacaaatg gattctttca tgttcctgtg tctccagaat ctcaaaagta cacatcattt      3000
     gtaaccatga atgggcagta tgagttcatg tttgtacctt tcggtatcac aaattctcca      3060
     gcagtgttta ccaggtttat aatggctgtt cttcgagagg cgataagaaa cgatgatgca      3120
     gtagtataca tggacgatgt gatcattgcc agcaaaagtg tagaacaggg cttggagaaa      3180
     ttaaagcgag tattgaaagt ggcagaagaa agtggcttgc gtataaattg gagcaagtgt      3240
     cagatattga aggacagagt aaatttccta ggatatatcg tggagttggg aacaataaaa      3300
     ccaggtgaag agaaaacaag agcggttgca aattttccga tcccacgaga taaaaaggga      3360
     atccaaaggt tcttaggttt gacttcgtat ttcagaaggt tcgtagaaaa ttacgctgtg      3420
     attgctaagc cattgtccga tctgttacgt aaagaagcta agtttgagtt caaagaaaag      3480
     caagtagaag cgttcgataa attaaaaaca gcgctaatca atgggcctgt tcttaagttg      3540
     tatgaccctt cactcgaaac ggaaattcat actgacgctt caaaatttgg attcggagct      3600
     gtgttgcttc agcgtgacaa ggaagatagc ttgtggcacc caattttcta tatgagtcgg      3660
     aagaccaagc cgtgcgaaga gaagtaccat tcttatgaac tggaagtgct tgcagttatt      3720
     ggagctttgg ttaagtggcg agtctacgtt cttggaaaaa gatttaaaat agtcacagac      3780
     tgcaatgcgt ttgccatgac tatgagaaag aaagagattc cgctcagggt ttcgcgttgg      3840
     gcaatgtacc ttcaagactt cgactatgaa attgaacata ggtcaggtaa taagatgaga      3900
     catgtagatg cgttgagcag ggtgttttgt ttcgttgtga cagatagctt aatacaccgt      3960
     ttgcgagcag ctcagctatc agatgattgg accaaggccg tgaagagtgt tgtcgaaacg      4020
     aaagagtatg aagatttcta tatatcaaat ggaatcttat tcaaagatcc gaatagggag      4080
     ttgcttgtag ttccatcgct tatggaagac gaaatcatac gaaacgccca caagcaagga      4140
     cacttttcat caaaaaagac gcaagaattg gtcgagaagt cttatttcat tcccaaggtg      4200
     agagagaaga tagcgaagat tgttgagagc tgtgtagagt gcattttagt gaatacaaaa      4260
     gctggaaagc aggaagggtt tttaactccg atagacaaag gggacaagcc gttggttaca      4320
     taccatattg accatgttgg cccgatggaa gtaactaaga agcgctataa ccacattctc      4380
     gtcatagttg atgctttctc aaagtatgta tggttatacc ctacacggag cactggggtt      4440
     gaagaagttt tgagttgttt ggagcgccaa tcagttcttt tcggtaaccc atacagaatc      4500
     gtgtcagatc gaggggctgc attcacttca cacctgttta aggagtattg cgaaaaggag      4560
     aaaatacagc acttgctaat cgcgacagga gttcccaggg gtaacggaca ggtagagcgt      4620
     atgcatcaga tagtggtccc gctgctatcg aaactgagcc aggaaaatcc agggtgctgg      4680
     tataagcagg taggcagagt gcaacaggcg attaacaaca ctgagccgag gagcacgaaa      4740
     gtcgccccgt tcaaattgct aactggattg gatatgcgtg tttcaagtaa tcaggaattg      4800
     aaagaactta tcggagattg tctgatttct gagctacagg atgaaaggga aaagctacga      4860
     gagatagcaa ggcagaatat tcaggatatt caaacaaaaa ataaaagggc attcgactct      4920
     aaaagaaagg tagaacgtaa gtttgagttg aatgatttag ttgctattaa acgcacccaa      4980
     tacgggacag gcttgaagtt gaaaggaaaa tatttaggac catacaaagt agtcaaggtc      5040
     aataatcacg gacgttacga cgtggagaga atagggcaag gagaagggcc atataggact      5100
     aagacagttg cagagtatat gaaaccattc gggtcgaatc aagcatcagg aaggccgaa       5159
//
ID   Gypsy-6_DSer-LTR repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-299
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1994-1994 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 299 BP; 95 A; 54 C; 63 G; 87 T; 0 other;
     tgtgggatcc ggtagtgttg gtagggtggc taaagttacc agaagcggac tcacatacta        60
     agtctctgat tcccttcgat agaatatact gaaagggagt aatcgattgc agataagtct       120
     ggcatctcct cgcaaaggca ttcgccgcca gaatctcgtt ttgcttggac gttctaaatt       180
     aagataacca cgttttgtta aattaagatt gaattaagtt acaagttacc agttaaatgt       240
     attaaacaat atcattaaat caaagccggt gttacaactt tctaaaagag gacactgca        299
//
ID   Gypsy-6_DSim-I repbase;    DNA;    INV; 6302 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DSim-I.
XX
NM   Gypsy-6_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6302
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1510-1510 (2012).
XX
RN   [3]
RP   1-6302
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           941..2206
FT                 /product="Gypsy-6_DSim-I_1p"
FT                 /translation="MAVAAPAQIELSDSNMVQVERQIHAIEVFNGDPNTLY
FT                 TFISRVDFILALYQTTDERQKLIIFGHIERNISGDVIRTLGVTNLSSWSEL
FT                 RTQLILNYKPQAPNHQLLEEFRNIQYRGNIRHFLEEAERKRQILISKLELE
FT                 NNTNETILYTRLIQTSIENLIQKLPSHIYLRIVNCNIPNLRSLINILQEKG
FT                 LYEAPTSSKDNIKPISMPNKITTNPQNRQMNNQIRPFVPLQPFYNNVYQPY
FT                 HQAHSHMPRFNPNTVPQYQNRPIYPQSNIPMSQVPRPNPAFNRQNIFDQNR
FT                 FGPSHTNMPTTYPQNRNVQPNNPTKRPRPSDSGQSKMSTGELRYQEVTSNQ
FT                 PENPYNYNYYYPCYPEYFHPQPYPYQLNYTQESIQFPPEQNYDNSEITEEE
FT                 LPTTNDNEPVDLEQAENFRLVAPDQTNI"
FT   CDS           5378..6193
FT                 /product="Gypsy-6_DSim-I_3p"
FT                 /translation="MDTFYFPIKQFKSRQNMNIILRVNLSDIDNLTHYFNN
FT                 KITNYTNIPQIDLLYNKMRRELSGITSHQTNRQKRGLINIVGSAFKYLIST
FT                 NQILLIAHIPIKQKTVHTINIIPYPDNNEYQLDHNEKDTYFEEHGKVYNQN
FT                 RKEINKEGIKNIIKRTKPICNFIPTTVNQIIKYVEPNNILTWNIKKKKKKN
FT                 TIIEQDCQEINKNVIINGNKIITIKQCKIKIGKITLNENQLNPELNLTPLY
FT                 TPIELIKIKPIEHKDIVKLISINNITGFIII"
FT   CDS           2209..5331
FT                 /product="Gypsy-6_DSim-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MIKHNNTELKCLIDTGSTINMLTRNIFQTPIQETNQL
FT                 IHTSNGPLIINTLTNIPPNNYFPVAQDFFIHQFSDHYDMLIGRKLLSEAKA
FT                 IIDYKKKTATLFNKIYKIKDSNNITERNHIQMDPSFPQDPTYLETSTLQEN
FT                 LFRLEHLNVEEKQKLITLLIKYQDIQFHEGDTLTFTNQEKHVINTTHNIPV
FT                 YSKVYSFQQTYEKEVEKQIQDMLEQGIIRESNSPYCSPIWVVPKKLDASGQ
FT                 QKLRIVIDYRKLNEITINDRYPIPNIDEILGKLGRSNYFTTIDLAKGFHQI
FT                 EMDSQSIAKTAFSTKYGHYEYTRMPFGLKNAPATFQRCMNNLLRPLLNKCC
FT                 LVYLDDIIVFSTSLEEHLQALQAVFEKLSQANLKVQLNKCEFLKQETTFLG
FT                 HVITKNGIKPNPDKIKAIVKYPLPRKTKEIKAFLGLTGYYRKFIPNFSDIT
FT                 KPLTKCLKKGATIDINSSEYLEAFQKLKLLISEDPILKIPNFEKKFTLTTD
FT                 ASNVALGAVLSQDGHPVSYISRTLNEHEVNYSAIEKELLAIVWATKTFRHY
FT                 LLGRHFEVASDHQPLCWLYKLKEPNSKLTRWKIRLSEYDFDIKYIKGKENY
FT                 VADALSRIKIEQTFFGESTQHSAEEDSNNLIGLSEKAINQYKRQIIFTKGS
FT                 NSIEIETYFKKQIIHLSYKEMTPEIAKRYLLDYFCSKTSALYIESDADFEV
FT                 IQKAYKETMNPRHTKIFRSLILLKNIPTYANFKELILNTHEKLLHPGIQKT
FT                 VKLFSETYYFPNSQLLIQNIINECQVCNLAKTEHRNTKMPLKVTPKPEHCR
FT                 DKFVIDIYSSEGNHYLSCIDIYSKFATLEQIKTKDWIECKNALMRIFNQLG
FT                 KPKILKADRDGAFSSLALKRWLETENVELQLNTTKTGVADIERLHKTINEK
FT                 IRIIKNSDDNEANLSKIETILYIYNHKTKHDTTGQTPAHIFIYAGQPILDT
FT                 QHNKEIKINEINKDRTEYNVDTRYRKGPLQKGKLENPFKLTRNVEQTDEDH
FT                 YKITNRNRETHYYKTQFKKQKKINKLYIPQAHGSS"
XX
SQ   Sequence 6302 BP; 2633 A; 1328 C; 843 G; 1498 T; 0 other;
     ggcgcagtcg gtaggatgat actaattgat gcgatattaa acatattcaa ttctctgtgt        60
     atcatccgct aaagaactac aactacaact tcgaaagctc gcgtcggtaa atcggtacag       120
     tcagttcaga accaacaaca tatccgaaac cacagagtga tagtgaaatt gaaaaaaaaa       180
     cttaaaatta tatcaaattt taagaagacg cctttgaatt cactgagtag taaatccaca       240
     aaaggttact ctaaacaatg tgaaatggct aagtgcgcaa caataaataa acgtaactac       300
     aattaagtga acttcaataa taaccgataa actaagcaaa aactaagtaa acgtaactac       360
     aactaagtga acttcaataa taaccgataa actaagcaaa aactaagtaa acgtaactac       420
     aactaagtga actacaataa taaccgttaa actaagtaaa aactaaataa acgtaactac       480
     aactaagtga actacaaaaa taaccgttaa actaagtgaa aactaaataa acgtaactac       540
     aattaagtga actacaataa taaccgttaa actaagtaaa aactaagtaa aacgtaacta       600
     caactaagtg aactacaata ataacagtta aactaagtga aaaccaaata aacttaacca       660
     caaataagcg aacaataata ataacagtga aaataagtgg aaattaaccc tttcgcgccc       720
     accgttgctt gtgagcaatt tctgttttca gaactaactg taagcgagcc ccttgtttta       780
     tcggctcatt ctttatgata gcaccgtgct tttatgtgcc tactctgaat acgaaaagca       840
     ataagcaaag acacaaacca ttagttagaa cacaaattct atccaaacca caaacctaaa       900
     taaagacact aacaaaaaaa attcaaacca acaaatcacg atggccgtag cagcaccagc       960
     acaaatagaa ttgtctgact caaatatggt tcaagtagaa agacaaatac acgcaatcga      1020
     ggttttcaac ggagatccca acactttgta cactttcatc agtcgcgtcg acttcatctt      1080
     ggctctgtat cagacaacag atgaaagaca aaaattaata atctttggac acatcgaacg      1140
     gaacatcagt ggcgatgtta tccgcactct cggagttacc aacctcagca gctggagcga      1200
     actcaggact cagcttatac ttaactacaa gccccaagca ccgaaccacc aacttctgga      1260
     agaattcagg aatatacaat atcgaggtaa cattcgacat ttcctcgaag aagctgaaag      1320
     aaaacgacag atacttataa gtaaattaga actagaaaat aatactaacg aaaccattct      1380
     ctatactaga ttaatacaaa ccagcatcga aaatctaatt caaaaacttc caagccacat      1440
     ttatctcaga atagttaact gtaatattcc aaacctaaga tcgctaataa atatattaca      1500
     agaaaaaggt ctttatgagg caccaacctc aagtaaagat aatataaagc caatttcaat      1560
     gccaaacaaa ataacaacca acccccaaaa tagacaaatg aataaccaaa ttagaccctt      1620
     tgtaccctta caaccattct ataataacgt ttatcaaccc tatcaccaag cacattctca      1680
     tatgcccagg tttaacccaa acacggttcc tcaatatcaa aataggccca tttacccaca      1740
     atctaacata cccatgtcac aagtacccag accaaaccca gcttttaaca gacaaaatat      1800
     ttttgaccaa aaccgatttg gacctagcca cactaacatg cccacaacat atcctcaaaa      1860
     cagaaacgta caacccaata acccaacaaa aagaccgaga ccatcagaca gtggacagtc      1920
     taagatgagc acaggagagc taagatacca ggaagtaacg tctaatcaac ccgaaaatcc      1980
     ttataattat aactactatt atccctgcta tccagaatat tttcaccctc agccttatcc      2040
     ctaccaattg aattatactc aagaatcaat tcagtttcca cctgaacaga actacgacaa      2100
     ttcagagata acagaagagg aattaccaac aacaaatgac aacgaaccag ttgaccttga      2160
     acaagcagaa aattttcggt tagtagcccc ggatcaaacc aatatataat gataaaacat      2220
     aataatactg aattgaaatg tctaattgat acaggatcta cgataaatat gctcacgcga      2280
     aatattttcc aaacgccaat acaagaaacc aatcagctaa tccacactag taatggccca      2340
     ctaattatta acacacttac gaatatacca cctaataact acttccctgt tgcccaagac      2400
     ttctttatcc accagttctc ggatcattat gacatgctga ttggacgcaa attgttgtcc      2460
     gaagccaaag caataatcga ttataaaaag aaaactgcta ccctatttaa caaaatatat      2520
     aagataaaag acagtaataa cattacagaa cggaatcata tccaaatgga cccttcattt      2580
     ccacaagacc ccacctattt agaaacctcc acacttcagg aaaacttgtt ccgactagaa      2640
     caccttaacg tagaagaaaa acaaaaatta attaccctac taataaaata ccaagacatt      2700
     caatttcacg aaggtgacac gctcacgttc acaaaccaag aaaaacatgt tatcaacacc      2760
     acacacaata tccccgtcta ctctaaagtt tatagtttcc aacagacata tgaaaaggag      2820
     gtagaaaaac agatccaaga catgctagaa cagggtatta tccgagaaag taattcaccg      2880
     tactgtagcc ccatttgggt cgtacctaaa aagctagatg cttctggaca gcagaagctt      2940
     cgtatcgtaa tagactatag gaaattgaac gaaataacaa taaacgacag ataccccata      3000
     ccaaacatag atgaaatatt aggaaaacta gggaggtcaa attatttcac aacaatagat      3060
     ctagcaaagg gcttccatca aatagaaatg gactcacagt caatagccaa aactgccttc      3120
     tctacaaaat atggacatta cgagtacacg cgaatgccat ttgggcttaa aaatgccccc      3180
     gctacatttc aacgatgtat gaataattta ctccgtccgc ttttaaataa atgttgccta      3240
     gtatacctag acgacatcat agttttctcc acatcattag aagaacatct tcaagcctta      3300
     caggctgttt tcgaaaaatt atcacaggca aatttaaaag tacaactaaa caaatgcgaa      3360
     ttcttaaaac aagagacaac tttcttagga catgttatca ctaaaaacgg gattaaacca      3420
     aacccggata aaataaaagc tatagtcaag tatccattac caagaaaaac taaagaaata      3480
     aaagccttcc taggactcac agggtattat aggaaattta tacctaactt ttctgacatt      3540
     accaaaccac tgaccaagtg cctaaagaaa ggagcaacaa tagatataaa cagttcagaa      3600
     tacttagaag cattccaaaa gttaaaatta ttaatctctg aagacccgat cctaaaaata      3660
     ccgaatttcg agaagaaatt tacactaaca acagatgcca gcaatgtagc tttaggagct      3720
     gttctatcac aagacggaca ccctgttagc tacatcagca gaacattaaa tgaacatgaa      3780
     gtcaattata gcgccataga aaaagaatta ttagcaatag tctgggccac taaaaccttc      3840
     cgacactatc tgttaggacg acatttcgaa gtagcttccg accatcaacc cttgtgctgg      3900
     ctatacaaac taaaagaacc caattcaaaa ttaacaagat ggaaaattag actttcggaa      3960
     tatgacttcg acataaaata tataaaagga aaagaaaatt atgtagcaga cgcactttct      4020
     agaataaaga tagaacaaac attttttggt gaatctacac aacatagtgc cgaagaggat      4080
     agtaacaatt tgatcggact atcagaaaaa gctattaacc aatataaaag gcaaatcatc      4140
     tttactaaag gttccaatag tatagaaata gaaacttact tcaaaaaaca aattatacac      4200
     ctttcttata aagaaatgac ccccgaaata gccaaacgat atctactcga ttatttctgt      4260
     tcaaaaacca gcgctcttta catcgaaagc gatgcagatt ttgaagtaat tcaaaaagca      4320
     tataaggaga caatgaatcc aagacataca aaaattttcc gaagcctcat cttactaaaa      4380
     aacattccca cgtacgcaaa ttttaaagaa ctaattctaa acacacatga aaaactctta      4440
     caccccggaa tacagaaaac tgtaaaactt ttcagcgaaa catactactt cccaaatagc      4500
     caactcctca ttcaaaatat aattaacgaa tgtcaagttt gtaacttagc aaaaacagaa      4560
     caccggaata caaaaatgcc actgaaagtc acccctaaac ccgaacattg ccgcgataaa      4620
     tttgtaatag atatctactc ctctgaagga aatcactatt tgagctgtat cgacatctat      4680
     tctaaatttg ccaccctcga gcagataaaa acaaaagatt ggatagaatg taaaaatgct      4740
     ctaatgcgca tattcaatca gttgggaaaa ccaaaaatcc taaaggcaga cagagatggc      4800
     gcattttcta gcttagccct taaacgttgg ctcgaaactg aaaatgtgga attacaactt      4860
     aacactacaa aaacaggtgt tgcagatata gaaaggcttc acaaaacgat aaatgaaaaa      4920
     atccgtatta taaaaaattc cgatgacaat gaagccaacc tcagtaaaat agaaacgatt      4980
     ctttacattt acaaccacaa aaccaaacac gatactactg gacaaactcc tgcccacata      5040
     tttatttatg ctggacaacc aattttagat acacaacaca acaaagaaat taaaatcaac      5100
     gaaataaaca aagaccgaac agaatacaac gtcgacacta gatataggaa gggaccgttg      5160
     caaaaaggga aattagaaaa cccttttaaa ttaacaagga acgtcgaaca aactgacgaa      5220
     gaccattaca aaatcaccaa tagaaataga gaaacacatt actacaagac ccaatttaaa      5280
     aaacagaaaa aaattaataa actttacatt ccacaggccc atggttcatc ataatattcc      5340
     tccttacgtt ttcaaataaa caacattgat actaaccatg gatacctttt attttccgat      5400
     aaaacaattc aagtcccgtc agaatatgaa catcattctt cgcgtaaacc tttccgatat      5460
     agataaccta actcactatt tcaacaataa aataactaac tacactaaca ttccccaaat      5520
     tgacctttta tacaataaaa tgcgaagaga acttagcgga ataacttcac accagacaaa      5580
     caggcagaaa cgaggactaa tcaacatagt aggatctgcg tttaaatatt taattagtac      5640
     caatcaaata cttctcatag cacacatccc tattaaacaa aaaaccgttc acaccattaa      5700
     cataataccc tacccagata ataacgaata tcaactcgat cacaacgaaa aagatactta      5760
     ttttgaagaa catggcaaag tctataacca aaatcgtaaa gaaataaata aggaaggaat      5820
     taagaacatt ataaaaagaa ctaaaccaat atgcaatttc attcctacaa cagttaacca      5880
     aataattaaa tatgtagagc caaacaatat ccttacttgg aatataaaaa aaaaaaaaaa      5940
     aaaaaatact attatagaac aagattgcca agaaataaat aaaaatgtaa taattaatgg      6000
     caacaaaata ataacaataa aacaatgtaa aatcaaaata ggaaaaataa cgttaaacga      6060
     aaatcagctg aatcccgaat taaatctaac accattgtac acacccatcg aattaataaa      6120
     aataaaacca atagaacata aggacattgt aaaactaata tcaattaata atattacagg      6180
     ctttattatc atataactca ttagcctcac gttttgtata gtttgtatca aacccaactg      6240
     cattaccaag attatatgcg tcaagcccat tacaagcata agcttccttt taaggggagg      6300
     ga                                                                     6302
//
ID   Gypsy-6_DSim-LTR repbase;    DNA;    INV; 338 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_DSim-LTR.
XX
NM   Gypsy-6_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-338
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1511-1511 (2012).
XX
RN   [3]
RP   1-338
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 338 BP; 105 A; 72 C; 42 G; 119 T; 0 other;
     agtagcataa tatgcttcac atattacgct tacaaccatt gtacatacaa tcttgcacat        60
     gcacaaacac ataaacaacc aattcacatt tttcttacat atcgttctat ttcatattct       120
     ttttcgttca cccacaaata cactgactag atattcccgt ttctcgcgac tcacttcgag       180
     ccgataaaac tctgtacagt agtcttaagc tgacattctt ggaataaaga cgttaaccga       240
     aatcgttcgt gttttaattt aaaggtttca gcgttgatcc ttgttttttg ttattaacgg       300
     atcatttatt cgactaataa attaataact acgtaagt                               338
//
ID   Gypsy-6_DTa-I repbase;    DNA;    INV; 5786 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DTa_;
KW   Gypsy-6_DTa-LTR; Gypsy-6_DTa-I.
XX
NM   Gypsy-6_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5786
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
RN   [2]
RP   1-5786
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1209..2522
FT                 /product="Gypsy-6_DTa-I_1p"
FT                 /translation="MDLDASGSTKCALCDKTLSADQLGRAKCGHEFHKDCI
FT                 DNLIKAKGSCPGCHPKGETSKQKGTAVTSSKQATSGADSEAIGIIVAQQLK
FT                 AMQNELLIQLTDRMAPIIQATISAHIQEPSGQAEAVRNFRAPSDIGEIELP
FT                 DRPNSAFTSSDLSSRPDKVGQIISSWKLRFNGDKEGLSVDKFLYRVEALTR
FT                 QTLNSRFDLLCGNASVLFEGKAREFYWRFHKTADSSNWDLLTEALHKQYRD
FT                 TRTDVDLRESIRDRKQKDRESFDSFYDAVVQITDCLEVPMPEKDLIETLRR
FT                 NLRPEIRHELLNVSIESVQKLRDICRRREGFLEDVKRTYGYQKPVPYRTQV
FT                 SELVQDCEDASGFSEVNQTPQVEAFGLVCWNCKQEGHRYQQCKVKKRVFCF
FT                 GCGLADTYKDVCPRCQKNPRLNTRPRQQPCVLRERQADSVVNQQ"
FT   CDS           2417..5713
FT                 /product="Gypsy-6_DTa-I_2p"
FT                 /translation="GCLSKVSKKPEVEHTTPTTAVCSQRKASGFRCQSAVT
FT                 LSASELGREGRSITFWPQLLKNNLSPNLTTKPVRTFSRNAKRIRDFWQAAK
FT                 AINAIRHKNNDNRPYAEIRMLDRVVLGLLDTGASMSAVGGNLAQQILRQRI
FT                 PFKRVATTANTADGQKQKVVGRFKIPVQYEGKTKELELYIIPSLSQELYLG
FT                 IDFWTVFELLPPEMNLEELTSEAHVLSRSQQADLQAVVSKFPSFADLGLGK
FT                 TSVLSHSIDVGDAKPVKQRHFPVSPAVEKLLYEEVNRMIKLGVIEESDSPW
FT                 SSPVVLVQKPGKVRLCLDSRKVNAVTKRDAYPLPQIDAILSRLPRANFISS
FT                 LDLKDAYWQIPLDPQSRDKTAFTIPGKPLYQFKVMPFGLTNASQTMTRLMD
FT                 KVIPAELRNEVFVYLDDLLIVSDSFEGHLSVLSSVASHIKAAGLTLNVEKS
FT                 KFCVKSVRYLGHIVGEGVVRTDPDKISAMTEFPLPRTLKSLRRFLGMVGWY
FT                 RKFISNFAAVSAPLTDLLKPRQKFIMTPEGEEAFRKLKEMLCSAPVLRSPD
FT                 FSQPFYIHCDASNSGVGGVLVQKSESGEECPIAFVSKKLNKAQKSYTVSEK
FT                 ECLAAIICIKRFRAYVEGHDFTVITDHASLKWLMSQTDLHSRLARWALKLQ
FT                 GFNFKIEHRSGKLNVVPDALSRVNEEEIAAVDVSHGLLVDLESTHFSDPEY
FT                 VDLAEKVKANASSLPDLKVADGFVYRKTEHLSGDPIHDNFCWKLWIPMGLV
FT                 PEVLKNAHDDPLASHGGIHKTLERLRRYYYWPRLVKDVKEYIQACETCKMT
FT                 KAPNCTLRPPMGKAPESARPFQKLYVDFLGPYPRSRSGNIGIFIVLDHYSK
FT                 FVFLKAVKKLTADVVVKYMQQDLFHTFGVPENIISDNGSQFKSESFQKLLR
FT                 EYQISHTLTAVYSPQANASERVNRSVIAAIRSYVRSDQKDWDEQLSSICCA
FT                 LRSAVHSSLGTSPYYMIFGQHFISTGATYKLLRALNLLEDRSLAFSKEDSL
FT                 ELVRSKALEVMKKQFEKNENRYNLRTREVSFREGQEVYRRNFKQSNFAAGY
FT                 NAKLGPAFVKARVKKKIGQVYYDLEDLQGRYVGRFHAKDIKQ"
XX
SQ   Sequence 5786 BP; 1720 A; 1092 C; 1389 G; 1585 T; 0 other;
     attataagtc ataaattaat aaataataat aaaaagattg gcgccctaac gtgttggcca        60
     catataggat tatattgtga ctcacacaca cacatataca taactgctga tcaaaatttt       120
     ctatcagtca gggggtgggc taatattagt cagtgtttac gtatagtcag ttacccaaga       180
     ttgccccagc tgctagaaaa acatatgttg gttttcactc gaagttgttc ggaagcatag       240
     gaaaacggaa taaaagttta cagaatagga attgcctagc cggccgcaga cgacaacatc       300
     ggagctggaa acatgcagac gtgtgtatac tctacacagt gcaacccgag tttgtgcaca       360
     tcaaacgcat aggactagca gttgcatttg ctttcataag tgacgcagct gaccacggat       420
     gataggcaca gaaataaggg gcacaaccat ttccatagat gggacatatt cctcggttaa       480
     tattcgcata ggacatactg agctttgatc tttcataagg gacactcagg ccacggataa       540
     tagcggaaga catatgccca acataaacgg aagagtagaa ggtcagtcgc atggaccgca       600
     gacagagata atttttgtct gaccacggcg gactcttcgc gctgtcgata ttgctgatta       660
     gcgataagca atgctcgcca attttttttt cccaattccc ttttgtgctg atcgaaacct       720
     tttggttgta taaaagtgca ttattattgc aagcaattgc tatgcttgct ggccagattt       780
     gatattgatt ttctttattt gtttcgtgtt tttatcgctt ttatatattt atcgttacct       840
     ttatttatct ttacctttat ttatcatatc tagtgaagaa ttttagatca gaaaatatta       900
     attaaattgt tgaatttata aacattttat ctagaaataa aaggaattaa aatttctaag       960
     tccaagtttg aagctgtcgg ttcgatcaaa ctagttcgaa cttcgtagat ctggtggatc      1020
     ggaaattgga taaagtatta tatatttatt tcttggaatt tatatcttta actgagttta      1080
     tcagaaacat tttggttcga ttcgttttaa agagctacat tttggtgtgg atcgagctcg      1140
     ttgtaaggcg agggatcccc atattttctc tttgtgttgg ttattagaat aaaaagtgcc      1200
     caataatcat ggatttagat gcttcaggtt cgacaaaatg cgcgctttgc gacaaaacgt      1260
     tgtcggcgga ccaattaggt cgggccaaat gcggccatga gttccacaaa gattgtatag      1320
     ataatttaat caaggctaag ggcagttgcc ctggttgcca tcccaaaggg gaaaccagta      1380
     agcaaaaagg aacagctgtt acatcgagta aacaagcaac tagtggagct gactctgagg      1440
     ctatcggtat cattgtggcg cagcagttaa aggccatgca aaatgaactg ctaatccaac      1500
     taaccgatcg aatggcacca ataattcaag caacaatttc agcccatatt caagagccgt      1560
     caggacaggc agaggcagtc cgtaacttca gagctccgtc ggatataggg gagattgaat      1620
     tgccggacag gcccaattcc gcttttacaa gctctgattt gagcagtcgt cccgataagg      1680
     tcggacaaat tattagtagt tggaagttgc gttttaatgg agataaagaa gggctaagtg      1740
     tggataaatt tctatatcgg gtggaggcgc taactcgcca aacgcttaat tcaaggtttg      1800
     atttgttatg cggcaacgcc agtgtactgt tcgagggaaa ggctcgtgaa ttttattggc      1860
     gctttcataa aactgcggat agttcaaatt gggatttgct tactgaagct ttacacaaac      1920
     agtatcgaga tacacgtacc gatgtggatc tgagagaatc aatccgagat agaaagcaga      1980
     aagataggga aagctttgac tcattttacg atgctgttgt gcaaatcacg gattgcctag      2040
     aagtacccat gcctgaaaag gatctaatcg aaacccttcg cagaaactta cgaccggaaa      2100
     tcaggcacga gcttttaaat gtaagcatag agtcggtgca gaaactaagg gatatttgtc      2160
     ggcgtaggga aggttttctt gaggacgtga agcgcactta tggttatcaa aagccagttc      2220
     cttatcgaac gcaagtatct gagttggtgc aagattgtga ggacgcttct gggttttcgg      2280
     aagtgaatca gacaccacaa gtagaggctt tcgggttggt gtgctggaat tgtaagcaag      2340
     agggccatcg ttatcagcag tgtaaggtga aaaaaagagt attttgcttt ggatgcgggc      2400
     tcgctgatac ctataaggat gtctgtccaa ggtgtcaaaa aaacccgagg ttgaacacac      2460
     gaccccgaca acagccgtgt gttctcagag aaaggcaagc ggattccgtt gtcaatcagc      2520
     agtaacttta agcgcatccg agttaggcag agaggggagg tctataactt tctggccaca      2580
     gctattgaag aataacttgt caccaaacct tacaacaaaa ccagttagaa ccttctctcg      2640
     aaatgcgaaa agaattagag atttttggca agcggccaaa gctattaatg ctattaggca      2700
     taagaataat gataatcgcc cgtacgcgga gatccgaatg ttagatagag ttgtacttgg      2760
     tcttttagat acaggtgcat ccatgagtgc cgtaggaggg aatttggccc aacaaattct      2820
     cagacagaga ataccgttta agagagtggc aaccaccgca aatacagccg acggtcaaaa      2880
     gcaaaaagtc gtaggccgat ttaagatacc agtccagtat gagggaaaaa caaaagagtt      2940
     agaactatat attattcctt ctttgagcca ggagttgtat ttagggatag acttctggac      3000
     cgtttttgaa cttttaccac cagaaatgaa tttagaagag cttactagtg aggctcatgt      3060
     cttgtctaga tcgcaacagg ccgatttgca agcagtcgtc agtaaatttc cttcttttgc      3120
     ggatttggga ctgggaaaaa cgagcgttct atctcactct atcgatgtgg gagatgcgaa      3180
     gcccgtaaag caaagacatt ttccagtttc cccagcggta gagaagttgc tctatgaaga      3240
     agtcaaccga atgattaagc tcggcgtaat tgaggagtct gatagtcctt ggtcttcgcc      3300
     ggttgttttg gtgcagaaac caggaaaggt gcggctttgc ctcgacagca gaaaagtgaa      3360
     cgccgttaca aaaagggatg cctatccgtt accacaaata gacgcaattc ttagtcgtct      3420
     cccaagagcc aatttcattt ctagtcttga tcttaaggat gcctattggc aaataccgct      3480
     agatccgcag tcgcgcgaca aaacagcctt taccattcct ggaaagccat tatatcaatt      3540
     taaagtcatg cctttcggcc tgacaaacgc ttcccagact atgacaagat taatggacaa      3600
     ggtgataccg gcagaactta gaaacgaagt cttcgtatat ctagatgact tgctcatagt      3660
     ttcagatagc tttgagggtc atttaagcgt tttgagttcc gttgccagcc acattaaggc      3720
     tgctggttta acgttgaacg tagagaaaag caagttttgt gtcaaaagcg tgaggtattt      3780
     aggtcacatt gtaggtgaag gagtagtgcg gacagatcca gataaaatat ctgcaatgac      3840
     ggaatttcca ttgcctagga ctttgaaatc cttgagaaga tttctcggaa tggtcgggtg      3900
     gtaccgaaaa tttatcagca attttgcagc agtatcagca cccttgacgg accttttaaa      3960
     gcccaggcag aaatttataa tgactcctga aggagaggag gcttttagga aattgaagga      4020
     aatgctttgt tctgccccag ttctgcgtag tccagatttt agtcagccat tttatatcca      4080
     ttgcgatgcc agtaattccg gagtaggagg tgtcttagtg cagaagtcgg agagtggcga      4140
     agaatgcccg attgcatttg tctcgaagaa gttgaataaa gcgcaaaaat cttacacggt      4200
     cagcgaaaaa gagtgtttgg ctgcaattat ttgcataaaa cgatttcggg catacgttga      4260
     ggggcacgat tttacagtca tcacggacca cgcgtcgctc aagtggctaa tgtcgcagac      4320
     ggatctgcat tctaggcttg ctcggtgggc gctgaaactt cagggtttta acttcaaaat      4380
     tgagcatcga agcggtaagc tcaatgtggt tcctgacgcc ttatcccggg tcaacgaaga      4440
     agaaatagct gccgtggatg ttagtcatgg tttattggtt gatctcgaat ccacccactt      4500
     tagcgatccc gaatacgtcg atctggccga gaaggttaaa gctaacgcga gtagtcttcc      4560
     agatttaaaa gtagcggatg gatttgtgta taggaaaacg gaacacttgt caggggatcc      4620
     gattcacgat aacttttgtt ggaagctatg gattcctatg ggcttggtac ccgaagtcct      4680
     taaaaatgca cacgatgatc ctctagcttc acatgggggg attcataaga cgttggagag      4740
     gctaagaaga tactattatt ggccccgatt ggtaaaagac gtgaaagagt atattcaggc      4800
     gtgcgaaaca tgtaaaatga ctaaggctcc aaattgtaca ttaagaccac cgatgggaaa      4860
     agctcccgag tctgcgaggc cctttcagaa attatatgta gactttttgg gtccgtatcc      4920
     ccgatcaagg agtggaaaca tagggatatt tatcgtgctg gaccactaca gcaagtttgt      4980
     atttttgaag gcggttaaga agttaacagc ggacgtggta gttaagtaca tgcagcaaga      5040
     cctattccat acttttggtg tcccagagaa cataatttca gataatgggt cacaatttaa      5100
     gtctgagtcc tttcagaaac tcttaagaga gtaccagata tcccatacgc ttactgctgt      5160
     ttactcgccc caagctaatg cgtcagagcg ggtgaacaga tccgtaatag ctgctatacg      5220
     atcgtatgtg cgcagcgacc aaaaggattg ggatgaacag ctaagcagca tttgctgcgc      5280
     tctcaggtca gcagtccact cgagtttagg gacttcgcct tactatatga tttttggaca      5340
     acatttcatt tcaactggtg ccacgtataa gttgctaaga gctcttaatt tgctcgaaga      5400
     tagatcgttg gcattctcaa aggaagattc actagaactt gttcgcagta aagcgctaga      5460
     ggtgatgaaa aaacaatttg aaaagaatga gaatagatat aatttgcgga caagggaagt      5520
     atcttttagg gaaggtcaag aagtatatag aagaaatttc aagcagagca atttcgcagc      5580
     tggatataat gcaaaattgg gtccagcttt cgtgaaagca agagtgaaga aaaagattgg      5640
     gcaggtgtat tatgatctcg aggatctaca ggggcgttat gttggcaggt tccatgcgaa      5700
     ggatatcaag cagtagtctc gcaagctgtg gtgttctcag tcttggagag ttatccccaa      5760
     gtctgatctt gatggggggg tatttt                                           5786
//
ID   Gypsy-6_DTa-LTR repbase;    DNA;    INV; 2095 BP.
XX
AC   .
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   17-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DTa_;
KW   Gypsy-6_DTa-LTR; Gypsy-6_DTa-I.
XX
NM   Gypsy-6_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2095
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
RN   [2]
RP   1-2095
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (17-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   [2]: 99% identical to the consensus.
XX
SQ   Sequence 2095 BP; 660 A; 385 C; 500 G; 550 T; 0 other;
     tgtagcgctt gctcagagaa gatacatttg tagcgccatc tgttggtcag tagtaaaggg        60
     ggtactgcgt tgccactaga gctaggatga gagtgggaga tgtaggtagg atagcgcgag       120
     agagcaacag tggcaagtgt caactatctt cgctttcacc ctgattcgat ccgaggttac       180
     cgccactttc ccggcgtggg gttcggtctt tccgtctgtg gcagctgaag tgttaagtcc       240
     aaatttttac tggtgacaaa aaaattcgaa aagtactcgc gagtgctgaa acacattgcc       300
     agcgggaaga aattccaatt aaatcggcag cgagccgtaa ttaaagggtg aggaaaagaa       360
     gagcgagggg ataggcagat tggtaatgat tttttggggt ttttataggc aaccgcttgg       420
     gttcgaaggc caacgacaag agagagaggg cgaattcgac taaagagaac tgggcgcatg       480
     cgcaaactac aaatccagcg agcaagttta acgccagcgt ttcgccaagg aatagccgca       540
     gcgctccagg acgggcgtga acgattacct catttcccgt catagataag tcatttccat       600
     ctataaccca tgccccggcc caaagaaaac cgcatccaag taatccaggg cacagactag       660
     gcgacgaact accatcgagc tattaattga ggcgaaaaac aacccaggtt cgatcgaact       720
     tagtcgccag tttcgccgcg cgctgaaggc ttgcacaacg tcgccgccgc gatctgcggt       780
     taagagttat ttttaaagtt taaaaagtta ctatttcggg ccgaaaagac ccttcgttct       840
     ggccaaatcc cgatctggga gtcgaccggg agtagccgcc gcggaaaagc ggagaaagta       900
     gttttaaatt tcggtttaag gttaggtaat aagtgctagt tcgtctaaag aagaaaaagt       960
     tcattttatt ttgtttggtg ttagtgtcat ttggggattt aattcgattt aagccccagt      1020
     ttaagtgcta tgttttaaag gatgcccaca aagccctaat attcccctgg cccatgaagt      1080
     cccatatttc tgtgtgtgtt atttttctta tccctatcta gcttcatcgt aacgactaaa      1140
     gcgctttcgt cggaggatgg aaaaagtgtg gtgagtggcc aaaaacattt atttaaaacc      1200
     cctttaatta ggcgataatc aaaaacaaaa gaaaaaaatt ataatttaac ctcaaaagaa      1260
     aaaaaaacga atatggggag ctacagagac taaaagagcc acactcagag aaaagaaaag      1320
     cagaaaaaat gaaagtttaa agagaactaa aattgaatat gagcggcttg aggctccttg      1380
     ctatttaaag ggttaaatat ttaaaaataa taaatccgta gtaaataaat ttaaatggga      1440
     aaaaataaat aaagtaaata ttaaatgaaa cctttccaag acgattaaca aaaatcccca      1500
     gattgcactt aaccatatta atatatacaa aagttttaaa aatcttattt aaatatttat      1560
     catattttaa cctattctta tatttgttgt ctatatttat atatttattt catgcatgtt      1620
     cttatattta ggttaagtga tggtttttat attttagttg gtaaataaat tttataatgt      1680
     ttaactaatt cggaagaaaa gtggccgcag ctagcattgt ccgcaatgta gggtagcact      1740
     tggttaaagg ggtcgctcag gctgtcaagc gacgaaggga atgagcgacc aaaggtaggg      1800
     tgggcagacc gagacctcca cgtcatccag ggaggcgaag ggtgaagtca gacgaaaggg      1860
     gaattgtcag ggaacgtgca gtaggtggta ttgtgtgtgt tattctcgac ccggttttaa      1920
     gttcggtgat gcacgcgagt atctaaatat tattagcaaa aggcaatacg agtcatcggc      1980
     aagatcatca cacccatagc cgagagccag agccggagaa tatctttcgc gtgcgtcgat      2040
     ggctcgggac aacaactagc ctaaattatg gttatgaggg tagcggttcg ttaca           2095
//
ID   Gypsy-6_DVir-I repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DVir_;
KW   Gypsy-6_DVir-LTR; Gypsy-6_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4438
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1817-1817 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [1968-2510] - Reverse transcriptase
CC   Positions [3537-4013] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1710..4421
FT                 /product="Gypsy-6_DVir-I_2p"
FT                 /translation="MSNSEEINILRICPEDFDCVYDIEDTASEYAKQEVRE
FT                 LISNYEPNKTKTTNVEMRIVVKDEAPIFSRPRRLAFTETSIVDEQIDEWLE
FT                 NGIIEESTSEFTSPIVLVKKRDGSTRLCIDYRRINKVIVKDHFPLPLIEDQ
FT                 LDRLQEANIFSTIDLKNGFFHVPVAESSRKYTSFVTHRGQYQFLRVPFGFS
FT                 NSPGVFQRHVNAIFRHLSRRGIALPYVDDIIIPAKNELEAVQHLKEVIGTC
FT                 KEYGLELNIKKCNFLKKRIQFLGHVICNKKIFPSPEKIEAVSKFKMPQTIK
FT                 QVESFLGLTGYFRKCIPNYATIARPLTELTKNKAKFRIEIAEENSVNILKK
FT                 LLTENPVLSIYNQTYETEVHTDASIDGFGAVLLQKSPEDCQLHPVYFMSKK
FT                 TTDAQRKYSSYELEILAVIEALTKFRVYLLGIHFKLVTDCNAFAKTLEKQS
FT                 LCTRVARWIMFLQEYDYTVEHRAGTRMKHVDALSRYPVMIINEDSISIAMK
FT                 DAQARDEKIKAIKEVLTDKNKAYDDYFIKSGILYKLIKDDELIVVPSDMQK
FT                 RIIGYAHDKGHFAAKKTKELICREYFIPNLEEKIKKYIDCCVPCILTNRKR
FT                 GKQEGLLHPLQKEDVPLHTYHIDFLGPLESTHKDYKHILAIIDSFTKFCWL
FT                 YPTKSTTANEVITKSTNQSIVFGNPAFIITDRGSAFTSQDFVKYCDDEGIK
FT                 LVKTTTGLPRVNGQVERLNAIIISVLSKLSIDDPTKWYRHVNQVQQAINST
FT                 FSRSIDATPFELLVGVKMKTKEDRKIRDIINKETIALFNDDRTELRAKAKT
FT                 QILKIQNENRNTYNLRRKHARRYNVGDLIAIKRTQFGRGLKLKPKFLGPYQ
FT                 VVKIKHNNAYDVQKVGNCDGPKNSATCAEYMKPWSIGSDDEDDEEAFGPNA
FT                 "
XX
SQ   Sequence 4438 BP; 1606 A; 758 C; 941 G; 1132 T; 1 other;
     cattttgggc gctcgtccga gattgagcaa gattgagcga gattgagcaa gtgtgagcaa        60
     gattgagcga gattgagcaa gtgtgagcaa aagtgagcga gattgtgcaa gattgaacag       120
     gagtgaataa agttgaaaac gatcttacgt tacaacaaca attgtgctgt cgtgccttaa       180
     tgatttaata agtgctagct tacgctcaag caaaaaaggg agcataactg cgttgcacaa       240
     gttcatcttt gaaaatgagg gagacagaaa taatcgcaaa cgtctacgcg aattttctgg       300
     cttcgagtat acagaaaatg acgcagagta tagtgcgaag aaggaatacg cattgaacaa       360
     tttaacgcag gctgaccttg tatcaatatg caacattcta ggtatagaat atgttcacgc       420
     agatttgcat ggacacattt ttcgtaatct gatgaaaaac aatttgatgg aattcaacga       480
     agtagacgaa gaagcaactg acgacgaaaa tgaaatagaa gaggaagcag acaacgcttc       540
     attccagacc gctgaccttc gaaataggga aaactcgaaa actaggagaa ttgctgaaaa       600
     ttacgaaatt gctcctcgct ttgcgatcag ctttcgcgac gtggaagaga gcattcgttg       660
     ttttgacggc acaaacacta ttccagtaga agtgtggata gaagaatatg aagagcaggc       720
     aacgctcacg tattggaacg atttccagaa gtttctgttc gcaaaaaagg cacttaaagg       780
     aatagcgaaa ctcttcgtat tgagtgagag aggtttaagc acttggaact ctctcaaacg       840
     agcactcttg gcagaattca gttcaagtgt aagcagcaaa gaaattcacg aacagctcgc       900
     gcagacgaaa cgcagcaaca acgagtgtgt attcgaattc ttttatagaa tgaaagacat       960
     tgcttctcga ggtaaaattg cagatgacgc tttcatacag tatttaattg acggaataga      1020
     tgagagaggc ggaaacaaat ccatattata cggtgcgaaa aatttaaatc aattcaaaga      1080
     aaagttgaaa tattataaaa caatgattga aaaagagtgt cgagtcgaaa aggaaaaaac      1140
     aaagcgtaac gattgcagtg ttaaagaaag agacaaaaaa gctttcaacg taagcaaaga      1200
     tgcaaaaaaa gatgtgaaat gctttaactg tggtgaaaaa gggcatacgt ctaattattg      1260
     tctgtttcag atgcaatcaa tacggtcaca tctcgaaaga ttgtgaacaa attgagaaaa      1320
     gcgaggccgt aatatcaaat acacgcggtt tgcaagccaa aaacgattta tcctgtaaag      1380
     aagtatgttt ctcaaataag aaatgtgtag cgttatttga tactggcagc aaattcaata      1440
     tcatccgtga agacttttat tgtgaaattg gcaagccgaa gctagaaatc tgcaatgttt      1500
     ttcttattgg attcggcagt gagcgcagtg agaataaaat aaaaccaact ggacatttta      1560
     aacatctaat tcttattgac gatgaagagt ttatacttga tttttacgtg gttccaatta      1620
     aatgtattga tgtcaaagtt attcttggcg aagaactatg tttacaggct gagattgtat      1680
     ttagtcgtaa cggtttacaa gttcgcaaaa tgtcaaacag tgaagagata aatatactaa      1740
     gaatttgccc tgaagacttc gactgcgtat acgacataga agacacagca agtgagtatg      1800
     ctaaacaaga agttcgagaa cttatttcga actatgaacc aaataagacg aagacaacaa      1860
     atgtagagat gcgcattgta gtaaaagatg aggcaccaat attttcacgg ccgcgcagat      1920
     tggcgtttac ggaaacgagt atcgtcgatg agcagattga tgagtggctt gaaaatggca      1980
     taatcgaaga gtctacatcc gagtttacta gcccgatagt acttgttaaa aagcgcgatg      2040
     gttcaacccg gctatgcata gattatagaa gaatcaacaa ggtaatcgtt aaagaccatt      2100
     ttcctttacc actaatcgag gatcagctgg atcgattaca agaagcgaat atttttagta      2160
     caattgatct aaaaaatgga ttttttcacg taccagtggc agaatcaagt agaaaataca      2220
     cttcgtttgt aacacatcga ggacaatatc aatttctgag agtgccgttc ggattttcaa      2280
     actcaccagg tgtttttcaa cgccacgtta acgcgatatt tcgtcacctg tcacgcagag      2340
     gaattgcttt gccatatgta gatgatatta tcataccagc caaaaacgag ctagaagcgg      2400
     tgcaacattt aaaggaagtt attggcacat gcaaggagta tgggttggag cttaacatta      2460
     aaaagtgcaa ttttttaaag aaacgtattc aatttcttgg tcatgtgatc tgtaataaaa      2520
     agatattccc atcaccagaa aaaattgaag ctgtatctaa gtttaagatg ccacaaacaa      2580
     taaagcaggt agaaagtttc ttaggcttga caggctattt tagaaaatgt ataccaaatt      2640
     atgctacaat agctagacct ttaacggagt tgaccaagaa taaagcgaaa tttagaattg      2700
     aaatagcaga agagaattcg gttaacatat tgaaaaagct tcttactgag aaccccgtgt      2760
     taagtattta caatcaaacg tatgagacag aggtacacac agacgcatcg attgatggct      2820
     ttggagcagt tttattgcag aaaagccccg aagattgtca actgcatcca gtatacttta      2880
     tgtcaaaaaa gactacagat gcccaacgta aatacagcag ctatgagtta gaaattttgg      2940
     cagtcataga agcattgacg aagtttagag tgtatcttct aggtattcat tttaaacttg      3000
     taacagactg taatgcattt gcaaaaactc tagagaaaca aagtctatgc accagggtgg      3060
     cacgctggat tatgttccta caagaatacg attatacagt agagcataga gctggcacaa      3120
     gaatgaagca cgtcgacgct ttaagcagat acccagtaat gataatcaac gaagatagta      3180
     tcagtattgc tatgaaagat gcacaagccc gagacgaaaa gataaaagca attaaggaag      3240
     ttttaaccga taaaaataaa gcatacgacg actacttcat aaaatcaggt attctataca      3300
     aacttataaa agatgatgag ttaatagtag tacccagtga catgcaaaaa agaattatcg      3360
     gctatgctca tgacaaaggc cattttgcag caaaaaagac caaagagtta atttgccgag      3420
     aatactttat tcctaacctc gaagagaaga taaaaaagta tatagattgt tgcgttccct      3480
     gcattttaac aaatcgcaaa agagggaaac aagaagggct gctacaccca ctacagaagg      3540
     aagacgttcc cctacacact taccacatcg atttcttggg tccacttgag tcaacgcata      3600
     aggactacaa acacattttg gcgattattg actcatttac caagttttgt tggctgtatc      3660
     caacgaagtc tactactgca aacgaggtca ttacaaagtc gaccaatcaa agcattgtat      3720
     ttggtaaccc agcatttatc attacggata ggggctctgc stttacttcg caagattttg      3780
     ttaaatactg tgacgacgaa ggcataaaac tagttaagac aactacaggc ctaccaagag      3840
     tgaacggtca agtcgagagg ctgaatgcta taattatttc agtactctca aaattgagca      3900
     ttgatgaccc aacaaaatgg tacagacacg tcaaccaagt acagcaggca attaattcga      3960
     cattttccag aagtattgac gcgacacctt ttgagctttt agttggtgta aaaatgaaaa      4020
     caaaagaaga tcggaagatt cgagatataa tcaataaaga aacaatagct ttatttaatg      4080
     acgatcgaac cgaattaaga gcaaaggcaa aaacacaaat tttaaaaatt caaaatgaaa      4140
     atagaaatac atacaatttg agacgaaagc atgcaagacg ttataatgtt ggcgacctta      4200
     ttgccataaa acgcacacag tttggtagag gcctaaaatt aaagcctaag tttttggggc      4260
     cctatcaagt cgttaagatt aagcataaca acgcgtatga tgtccagaaa gtaggtaatt      4320
     gcgatgggcc gaagaattct gcaacgtgtg ccgaatatat gaagccatgg tccattggca      4380
     gcgatgatga agatgacgag gaagcattcg ggccgaacgc ttagtcagaa tggccgaa        4438
//
ID   Gypsy-6_DVir-LTR repbase;    DNA;    INV; 394 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DVir_;
KW   Gypsy-6_DVir-I; Gypsy-6_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-394
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1818-1818 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 394 BP; 147 A; 85 C; 85 G; 77 T; 0 other;
     tgtgggttgg gtaaatgctg tatacccaaa tcccactgtg cacaaccaac agcacaagaa        60
     tccctagaca acgaacacgc taaaagacga acgacgaata cacgacgcgt aacaacgagc       120
     aaagaagacg gcgaattcgc agacggcgag ttatccaaaa acgacgatca acgaggacag       180
     tgcaaagcca cgagggcaac gtactggacg tagagcagaa gatgtttgct cgttaagacg       240
     aaaagttcaa cgctggacct gtgtggtatg aaggctgaga acaaaacgac gaaacgacgt       300
     gttactttga ttcgaatgat aatcatccta agcaatacaa tttgttaaat caacaataca       360
     cttgtttata ataaactttt aatataaaac ccca                                   394
//
ID   Gypsy-6_DWil-I repbase;    DNA;    INV; 5487 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DWil_;
KW   Gypsy-6_DWil-LTR; Gypsy-6_DWil-I.
XX
NM   Gypsy-6_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5487
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
FH   Key           Location/Qualifiers
FT   CDS           38..5365
FT                 /product="Gypsy-6_DWil-I_1p"
FT                 /translation="MKYTEIIKLNKTALFELLAAKEVPCDKEASIYQLRAL
FT                 VKAVMAQNQSGESDVPEEQAVSPAVSANVLAGQLVDVGPEPLIEQRGVGNI
FT                 EQPSTDQVGANQLPTMSRETPVGPDTNVHVREGAQASETDELASILSSIEL
FT                 YTARKNLAELKTRVMELEENLSGPEYNCRMNLKDVETTVPKFSGDGDLSIH
FT                 VWIRELEKAARVYVLSDAQCWSLGNRLLDGSAKAYMTYEKTTTWSELKDAL
FT                 VKVFGLQMTNYEIANQMRKRSIGKGESLLQYFIIMRNIAQQGNFEDTDVVK
FT                 YIVDGLQDRTGLSAPLYYCTSLNELREKMMRFQTVQPPAKNYVPQARQTSD
FT                 RAQAITPAAKDKRCFNCRQIGHLMFDCPRPERPKGSCYRCFKVGHQYRNCP
FT                 MRTQIAAMSSSEDPDTIDDKSFIQLVSLRISCKGGCTDVNNIFALLDSGSP
FT                 VSFASRALMPHLDCDKLVKSSFHGLSGGSILTFGTVKCLVLFCKKYYEIQF
FT                 LVIPDNIMPTQLLLGRDALNKIGLKFSLIENVRKYEKNSASLKSTIAFVYK
FT                 SFCASLFTKYPKHNTISNNTTDLDNNCNNPNVNTNASPFREWLTELQTVCA
FT                 TLSDTGNTTVGSEFGLGAMRECRDIVHEHYIDRFSINYGLPKYMMRICLTD
FT                 TTPFHSSPRRLSYYEREIVSKTVSELLANNVIRPSNSPYASAIVLVRKKDG
FT                 NIRMCVDYRGLNKKTVRDNFPLPLIEDCLEYLESKTVFSVIDLKSGFYHVG
FT                 MEEDSIKYTAFVTPDGQFEYLRMPFGLKNGPAVFQRFISNILSDMIRDREL
FT                 VVYMDDIILATRTVDQHLKLLAKLLDRFIQYNLELNLKKSIFLQKSIDYLG
FT                 YEVSEKGILPNNTHLKAIQEYPEPLNSKALHSCLGLFSYFRKFVPNFSRIA
FT                 KPLTELLKQGGPFPMNKTAKNVFLTLRSALSSPPVLAIFNPNYETELHTDA
FT                 SSNGFGASLMQRQTDGKMHPVSYYSRKATAAESRYHSFELETLAIIYAVRR
FT                 FRVYLEHRPFLIVTDCNSLVQTLSKKSINPRIARWSLELENFDYTIAHRPG
FT                 SNMGHVDALSRQTELLENIVEGDFDPCDLLVKRDQNAPIEPCEPHITFEES
FT                 CVKPCESGRDLTKLCAIQDDSCVESCELVKPPEFESDFIEPCVPSEKNEFS
FT                 RDSIRPYAVLEQSCSEPCEIKPCEIKPFETKPCETDPCEIKPFETKPCETD
FT                 PCEIKPFETKPCEIDLCEKNPCKIDPCEIKPCEIKPFETKPCEIDLCEKNP
FT                 CKIDPCEINPCKIEPCAPLGKNYLGPFGTNPCVHLAKSCFRPCELCLERSR
FT                 LKLVKNKPCVSLNESSVDPRLSNQIERSDQLDRNESANLVGVVGASPQDVD
FT                 LLLQSEQIRDPDIRKLRENLEKGNDVGFELIDGIVYKRNAKERLCLYAPAR
FT                 MQGELIRRCHEKLGHLGVEKCVNNLKEKYWFPLMNPKVESFIKDCLPCILH
FT                 SVPRTIHNRTLHSIPKSPIPFDTIHVDHLGPLPSVTSKRKHLLVVIDAFTK
FT                 FVKLYPVNSTSTKEVTAALEKYFDYYSRPRRVISDRGTCFTSFEFAEFVEN
FT                 RNIDHIKVATAAPQANGQVERVNRVLTPMLGKLSEPLAQADWYKLVNRVEF
FT                 AINNSVQCSTGKTPSMLLFGCDQRGPLVDELTEYLDEKFSSENPCNLEATR
FT                 QEASAKIQLSQERNEKRYALRHRAPLSYRVNDFVAIRNVDVTPGSCKKFAP
FT                 KYRGPYKINRVLPNDRYEVTDIDDCQLTQLPYKGILESARLKPWMHACDKT
FT                 VSFCL"
XX
SQ   Sequence 5487 BP; 1680 A; 1028 C; 1245 G; 1534 T; 0 other;
     aatcaggtgt ggagtttgcc ctaaagaacg tattttcatg aaatacaccg agatcattaa        60
     attaaacaaa acagcattgt ttgagttgct agcggccaag gaagtacctt gcgacaaaga       120
     agcgtcaatt taccaattgc gagcattggt aaaagcagtc atggcacaga atcagtctgg       180
     agagagtgat gtacccgaag agcaggcagt cagcccagca gtgtctgcaa atgtgcttgc       240
     cggacaactt gtggatgttg gtccggagcc tcttattgag cagcgcggcg tgggaaacat       300
     tgagcagcca agtacggatc aagtgggtgc taaccagttg ccgacgatgt ctcgtgagac       360
     ccctgtaggg ccagacacga acgtgcatgt tcgtgaaggc gcacaagcga gcgaaaccga       420
     cgaattggct tcgattctta gtagcatcga attgtataca gcacgtaaaa acctggcgga       480
     gctaaaaaca cgtgttatgg agctggagga gaacttaagc ggaccggaat ataattgccg       540
     catgaacttg aaagatgtcg aaactactgt acctaaattc tctggtgatg gtgatctgtc       600
     cattcacgta tggattcgtg agctggagaa agcagcaaga gtgtatgtac tgagtgatgc       660
     ccaatgttgg tcgttgggca accgactgct ggatggatct gctaaagcat acatgacata       720
     tgaaaagact acaacctgga gcgagctgaa ggatgccctt gtgaaggtat ttggcctaca       780
     aatgacaaac tacgagattg ctaaccagat gaggaagcgc tcaattggca aaggagagtc       840
     actcttgcag tatttcatca ttatgcgaaa tattgctcag cagggcaatt ttgaagacac       900
     cgatgtggtc aaatacattg ttgacggact acaagatcga accggattgt cagctccttt       960
     gtattattgt acttctctga acgaattgcg agagaagatg atgcgttttc aaacagttca      1020
     gccaccagcc aaaaactacg ttcctcaggc tcgtcagact tcagaccgtg cgcaggccat      1080
     tacgcctgct gcaaaggata agagatgttt caattgccgc cagattggtc acttaatgtt      1140
     tgactgtcca cgcccggaga gaccaaaagg aagttgctat cggtgcttca aagtgggcca      1200
     tcagtaccgg aattgtccaa tgcgaaccca gatcgccgcc atgagctcta gtgaagaccc      1260
     ggacaccatt gatgataagt catttattca attagtaagt ttaagaatat cttgtaaagg      1320
     gggatgcact gatgttaata atatttttgc cctattagat tccggaagcc cagtaagttt      1380
     tgccagtaga gcgttgatgc cgcatttaga ttgcgataaa ttagttaaaa gttcttttca      1440
     tggactgagc ggtggctcta ttctgacttt tggaacagtc aaatgtttag ttctgttttg      1500
     caaaaaatat tatgaaattc aatttttagt tattcccgat aatattatgc cgacgcaact      1560
     acttcttggt agagacgcct tgaataaaat aggtcttaag ttctcattga ttgaaaatgt      1620
     aagaaagtat gaaaagaatt ccgcatcatt aaagagtacc attgcttttg tttacaaatc      1680
     cttctgtgca tccctgttta ctaaatatcc taagcataat accattagta ataacaccac      1740
     tgatctagat aataattgta ataaccctaa tgtaaacacg aatgcatccc cgtttcgaga      1800
     atggctaaca gagttgcaaa ctgtttgtgc aacgctgtca gataccggga atactactgt      1860
     tggcagtgaa tttggattag gcgcgatgcg tgagtgccga gacattgtgc atgagcatta      1920
     cattgaccga ttttcaatta attacgggtt gcctaaatat atgatgagaa tatgtctgac      1980
     agatacaaca ccatttcata gtagtcctag aaggttatcg tattatgaaa gagaaatcgt      2040
     ttctaaaacg gttagtgagt tgttagccaa taatgtaatc cgaccaagca actctcccta      2100
     tgcgtccgcc atcgtcctag tgcgaaaaaa ggatggcaat atacgaatgt gcgttgatta      2160
     tcgaggttta aataagaaga ctgtgaggga taattttcca ttgcctttga tagaagattg      2220
     cctagaatac ctggagagca agaccgtttt ctccgtcata gatttgaaaa gtggctttta      2280
     ccatgtaggc atggaagagg attcaattaa atacacagca ttcgttacac ccgatgggca      2340
     gttcgaatat ctgagaatgc cttttggtct aaagaacgga ccagctgtat ttcagagatt      2400
     tatatcgaac atacttagtg atatgattag agatcgagaa cttgtagtat atatggacga      2460
     cattattctt gccacccgca ccgtagatca gcatcttaag ttgttagcaa aactgttaga      2520
     tcgttttatt cagtacaatt tagagctcaa tttgaagaaa agcattttcc tacagaagag      2580
     catagattat ttaggatatg aagtcagtga aaagggaatt ttaccaaata atacacattt      2640
     aaaagctatt caagaatacc cagaaccact taacagcaaa gcgttacact cgtgcttagg      2700
     cttattctct tattttcgca aatttgttcc gaatttctcc cgcatagcta aaccgttaac      2760
     tgagttgctt aaacaaggtg gtccatttcc gatgaacaaa accgctaaaa atgtatttct      2820
     tacattaaga tccgccttat ccagtccgcc cgtattagct atctttaacc ctaactacga      2880
     aactgagttg catactgacg ccagttcaaa tggctttggt gcctctttga tgcaaagaca      2940
     gactgatggc aaaatgcatc cagtctctta ttattcccga aaggcgacag ccgccgagtc      3000
     ccgttatcac agttttgagc ttgaaacttt ggccataata tatgccgtgc gccgatttcg      3060
     cgtttattta gaacacagac catttttgat cgttaccgat tgtaattcat tggtccaaac      3120
     cttgagtaaa aaatcaataa atccccgcat tgcgcggtgg tcgttggaat tggaaaactt      3180
     tgattatacc attgctcaca gacccggttc aaacatgggc catgtagacg cattaagtcg      3240
     gcaaaccgag ttgttagaga atattgtaga aggtgatttt gatccttgcg atttattagt      3300
     gaagagagac cagaatgccc caattgaacc ttgtgaaccg catattactt ttgaggaaag      3360
     ttgcgttaaa ccgtgtgagt ctggtagaga tttgaccaag ctgtgtgcta ttcaagatga      3420
     tagttgcgtt gaatcatgtg agttagttaa accgcctgag tttgaaagcg attttataga      3480
     accgtgtgtc ccctcagaga aaaatgagtt tagtagagat tcgattaggc cgtatgccgt      3540
     tttagaacag agttgttccg aaccgtgtga gataaaacct tgtgagataa aaccgtttga      3600
     gacaaaaccg tgtgagacag acccttgtga gataaaaccg tttgagacaa aaccgtgtga      3660
     gacagaccct tgtgagataa aaccgtttga gacaaaaccg tgtgagatag acctgtgtga      3720
     gaaaaacccg tgtaagatag acccgtgtga gataaaaccg tgtgagataa aaccgtttga      3780
     gacaaaaccg tgtgagatag acctgtgtga gaaaaacccg tgtaagatag acccgtgtga      3840
     gataaacccg tgtaaaatag aaccatgtgc tcctttaggg aagaattatt taggaccgtt      3900
     tgggacaaac ccgtgtgttc atttagcgaa gagttgtttc agaccgtgtg agctatgttt      3960
     agaaagaagt cggttaaaac tggttaagaa taaaccttgc gtttctttaa atgaaagttc      4020
     tgttgatccg agattgagta accaaatcga aagaagtgac cagctcgatc gaaatgagtc      4080
     ggcaaacctg gttggtgtag tgggtgcgtc tccgcaagat gttgatttat tattgcagtc      4140
     agaacaaata agagatccgg atatccgtaa actaagagaa aatttagaaa aaggcaatga      4200
     tgttggattt gagttaatag atggtatagt gtacaaaaga aatgctaagg aaagactgtg      4260
     tttgtatgca ccggctcgca tgcaagggga attaataaga aggtgtcacg agaaactagg      4320
     tcacttaggc gttgagaaat gtgtaaacaa tttgaaagaa aagtactggt tcccattaat      4380
     gaatccaaag gttgagtcgt ttataaaaga ttgtctgccg tgtattctac atagtgttcc      4440
     aagaactata cataatagaa ccttgcatag tattccgaaa agtccgattc catttgatac      4500
     tatccatgtt gaccacttag gtcccttacc gagtgttaca tcaaaaagaa agcacctttt      4560
     ggtagtgatt gacgcattta caaagtttgt caaattgtat cccgtaaatt ccactagtac      4620
     caaagaagta accgccgcgt tagaaaaata ttttgattat tatagccgac caagaagagt      4680
     tatatccgac agaggtacgt gttttacgtc gtttgagttt gctgagtttg tagaaaatcg      4740
     aaatattgac cacattaaag tagcgactgc tgcccctcaa gccaatggac aggtcgaacg      4800
     tgtgaaccgt gtgttgaccc caatgttggg aaagctgtca gaacctttag cccaagccga      4860
     ttggtataaa ttagttaatc gtgtcgagtt cgctattaat aactcagtgc agtgtagtac      4920
     cggtaaaact ccgtcaatgt tgttgtttgg ttgcgatcag cgaggcccct tagtagacga      4980
     attaaccgag tatcttgacg agaaatttag ttcagaaaac ccctgtaacc ttgaggccac      5040
     taggcaagag gcaagtgcga aaattcaatt atcgcaggag cgcaatgaaa agcggtacgc      5100
     cttaaggcat agggcaccat tatcctatag agtcaatgat tttgttgcca ttcgcaatgt      5160
     agatgtcact cccgggtcgt gcaaaaagtt cgctcctaaa taccgtggtc cttataagat      5220
     aaatcgagtt cttccaaatg accgttacga agtcactgat attgacgatt gtcaacttac      5280
     tcaattgccc tacaaaggta tcttagaatc agcccgactc aagccgtgga tgcatgcgtg      5340
     tgataaaact gtgagtttct gtttgtaata tgtatttgat aagcagtatt tatatgtata      5400
     ttgtatgtat tgtatatatg tatattgtat gttgtatgtt tgttgaattg tatgatcgag      5460
     gtcgatcaaa tgtcaggatt ggccgaa                                          5487
//
ID   Gypsy-6_DWil-LTR repbase;    DNA;    INV; 231 BP.
XX
AC   scaffold_180699;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DWil_;
KW   Gypsy-6_DWil-I; Gypsy-6_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-231
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180699; Positions  653287  653057.
XX
SQ   Sequence 231 BP; 88 A; 42 C; 42 G; 59 T; 0 other;
     tgtaaacatt aggaatattt taaataaacc cgctcctcgt ctcagtgaat ttccccgata        60
     accgaatttg ggcacactaa aagggtataa tacgctaagg cggggtacgg gcacactctc       120
     ttgaatatag tcaataagac cgcatgtgca attaataaat tcagaaataa aatccggaaa       180
     tataaagaca atcccaaggg attaattact ttaaaaagta gagagtttac a                231
//
ID   Gypsy-6_FoCa-I repbase;    DNA;    INV; 6053 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_FoCa-I.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-6053
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2575-2575 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           230..2098
FT                 /product="Gypsy-6_FoCa-I_1p"
FT                 /translation="MDFLVQALNLFASPVTNTTIATEGTETTAPLTSDSPW
FT                 PWFVTWSLETLGISFLVGIVLYGLYWXIKKGLSKIFAQIPRGQKDVVARKK
FT                 LDKVIQRMTQFNAEFGGFRQFRDLVQDESIQIYELIDEITTEIASLXVRIS
FT                 DQLXNNIEECKAHASRDLAXKFNILKGNLNRIDKECNFSQIQLTESIXGLQ
FT                 EQIDDLHASVSPTPDPVLSSILGPQYPISAPASDSVKNYVDKKLDSITTGI
FT                 DHYRRSTAARMDDTCDKMRAEIKTLRGEIEAIKKQSMYPPPQTFTPLSSPS
FT                 TTPTTPIIISSVTIPPPSTNTPLTAPTIPSVPPPPNPSTAPPTQAPIIIPD
FT                 GTIIVPPPTGIPSTTPVVYHSVGNIPPPKFLPNLDTAENFLNELEGFMRRK
FT                 RLDPMDWILMLPSVFSSDRKQSTWWQRTKLVAQTWGEFKSHFIIMYGSDSD
FT                 KMNSLEKLLNRRQRDNEDFHTFALQMDMQYRKVYXVAPLANESEVLQFVXE
FT                 RALPHLRIPLLGCGASTFVELINFGKKIQTATDIDKRPSKSSPTPIKNGHK
FT                 SNNGGXKAEGQSSSSKSHPTAKNDNKSGNFSRRTFTCANCPGSTSHSTSRC
FT                 FKGKQQANVVRQAQGSEVSGNGEEE"
FT   CDS           2074..5619
FT                 /product="Gypsy-6_FoCa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GLGKRRGGVDIGGCVISHPLLFNPKRIIPQINVNTFF
FT                 GSFSALVDSGSTISVVSRSILPKHIKLSKWVHGPVLMLDNTEAFPSGTIRL
FT                 KVTLESRSFFHDFAVMESSHHFLLGTDFQHHCGFAFDMCDLVWGFSDTFCK
FT                 TRYPLKVVHTSAHTTHNLILLSDFEQDEIKELLKRFPDVIDAPLGRIKGVQ
FT                 HRIKLIEERPKRQRPYPVSQHKHEEICRQVDDMLKLGVIRKSKSPYAHPIL
FT                 LREKPDGTFRFCVDFRHINKLTPNDSFPMPRIQDILRRLADAKYLSTMDAE
FT                 KGYWQIAMEEKSKKYTAFCTERGLFEFNCMAFGLKNAGASYQRMMNELLEG
FT                 LTNFCLVYLDDVIVFSKTFGDHKRHLEIVLKRFRDAGLTLKRSKCFFGKSW
FT                 VEFLGHTVSENGIGMKADAVKAIQKISSDTIKTRKDLKGFLGMIGWYRHFI
FT                 ERFADLAEPLNELTSPKRKFKWSPKALQAFENLKSAIVSDLVLAHPLFGKP
FT                 FIVRTDSSRTGMGAVLSQINDAGEEKVISFASKTLNPAQRNYSTSEQECLA
FT                 VVWGLEKFREYLDGHEFILQTDNSALVYLDTMKNSNQRLMRWSWKLQEWSP
FT                 YIQHIKGRDNVVADFFSRHSSPDNTQIEREGDYMYPPIRVCKLSLTCNLDR
FT                 DVIRAHQEQCPGEMAENYAGPEFSTINGVIYKIVGNKTLPVIPTTLLPKFL
FT                 AEFHDSPHSGHLGVEKTKRKISSRAFFTHMHKRISEYIRSCDICQRVKISN
FT                 QKPPGLLQSSPTEAPWETLYTDLMGPYVKSHPGGYTHILVVIDGFSKWTEI
FT                 FPLRNATAVAVGKVLEEQVFCHFGMPKTLVSDNGTSFTANIISYLCKQWQV
FT                 QLKFTSPYHPQSNLTERENRTIKTMIRAYLDGQPHKNWPKYLPFFRFAINS
FT                 SVQDSTGFSPAKILLNKELSVPFDISTQFSEAELTLLKSSIEKPQXDIIFD
FT                 RAQEYSKLLSLVTDNLNRAKAKQKHDYDQRRRHDEFRVGDSVVIQSTIRSD
FT                 KDKGVAAGLAPLYRPDIAQIHEVLSNLNYKIIFEDGTIYGPIHIQRLRRYI
FT                 HRDADPSAPPQLSPATEPSPPCEVVVSPHNFDNNVDINLRTDSNIDINLTT
FT                 GAPDTISPLPSTTTTYNGMPSLVDESAAQPPIRRSTRSTRRPARYGPLRPN
FT                 SQQDPPSSQHRQMPLLTPYTARD"
XX
SQ   Sequence 6053 BP; 1608 A; 1591 C; 1195 G; 1637 T; 22 other;
     tggtgccgaa caccctcttc ggttacgaac agttaagtgc tctcctccac cccttttttg        60
     cggtggaaaa gtgacaattt tggtgcgttc atcggcgtat ggaaaacgcc caccaaaaaa       120
     agtgtgctcc atatggaaca gtgaaaacgc ccaccatata ttgaacagtg aaaacgcccc       180
     ttctcctaca aattcatctt ggatacgaga aacaccccac tctatcatca tggatttcct       240
     cgtccaggct ttgaatttat ttgcctcacc ggtcaccaat acgacaatcg ccacagaggg       300
     aactgagacc accgcccctt tgacctctga ctcaccatgg ccttggttcg tgacgtggtc       360
     attggaaaca ttgggcatct ccttcctcgt cggaatagtg ctttatggtc tgtattggtt       420
     matcaaaaaa ggcttgtcta aaatttttgc acagattcck cgtggacaaa aggacgtcgt       480
     cgctcgtaaa aaattggaca aagtcatcca gcggatgacc caattcaatg cagaatttgg       540
     tggattccgt caatttcgtg atctggtcca ggatgagtca atacaaattt atgaattgat       600
     tgatgaaata actactgaga ttgcatcact ttwggtcaga atttccgatc agttawcaaa       660
     taatattgag gaatgtaagg ctcacgcttc acgtgacctt gctgakaaat ttaatatttt       720
     gaaaggaaat ttaaatcgta ttgataagga gtgcaatttc tctcagattc aactaactga       780
     atctattkct gggttacagg agcagattga cgacctccac gccagtgtct ctcctactcc       840
     tgacccggtc ctctcatcga tcctcggacc ccaatatccc atttccgcgc cggcctcgga       900
     ctctgtcaag aattacgtcg acaagaaact ggacagcatc acgaccggca tcgaccatta       960
     tcgtcgttcc accgctgccc gtatggacga cacgtgcgac aagatgagag ctgaaataaa      1020
     aaccctacgs ggagaaattg aagcaatcaa aaagcaatca atgtatcctc ctccccaaac      1080
     tttcacaccg ctctcatcac cctccaccac tcccaccacg ccaattatca tcagttccgt      1140
     gacgatccct ccaccatcca ctaatacacc cctcaccgcc cccacaattc cctcggtccc      1200
     tccaccacca aatccatcca cggctccgcc cactcaagct ccaattatca ttcccgatgg      1260
     caccatcatt gtacctccgc ccaccggaat cccttccacc accccggtcg tttatcactc      1320
     tgttggaaac attcctcctc ccaaattcct accaaacctg gatacggcag agaatttttt      1380
     gaatgaattg gaaggcttca tgcggcgcaa acgtctcgat cccatggatt ggattcttat      1440
     gcttccgtcg gttttctcat ctgaccgcaa gcaaagtaca tggtggcagc gtaccaaatt      1500
     agtggctcaa acatggggag aattcaagtc ccacttcatc atcatgtatg gatckgactc      1560
     tgacaagatg aattcacttg agaagctcct caaccgtcgc caaagggaca atgaagactt      1620
     tcacactttt gcactgcaaa tggacatgca gtacmgaaaa gtttacaamg tkgctcccct      1680
     tgcaaatgag tccgaagtac tgcaattcgt ckccgaacgt gcgctccctc atctccggat      1740
     ccctcttctc ggttgtggtg cttccacctt cgttgaactc atcaatttcg ggaagaaaat      1800
     tcagaccgcc accgacattg acaagcgccc ctccaagtct tcacccaccc ccatcaagaa      1860
     tggacataaa tccaacaacg gaggtgmcaa ggctgaggga caatcctcat catcaaaatc      1920
     ccaccccacc gccaagaacg acaacaaatc aggcaacttt tcccggcgca ctttcacttg      1980
     cgccaattgc cctggatcca cttcccacag tacttcacgc tgcttcaagg gaaaacaaca      2040
     ggccaacgtc gtccggcagg cacaaggatc tgaggtctcg ggaaacggag aggaggagta      2100
     gacattggcg ggtgtgtcat ctctcatcct ttactattta acccgaaacg aatcattcct      2160
     caaataaatg taaatacttt ttttggttct ttttctgctt tagttgatag tggtagtaca      2220
     atctcagtag tatctcggtc catccttcct aaacacatta aactttctaa atgggtacac      2280
     ggaccggtac tcatgctcga caataccgaa gctttcccca gtggtactat aagacttaaa      2340
     gtgacccttg aatctcgttc attttttcat gatttcgcgg tgatggaatc ttctcaccac      2400
     tttcttttgg gcactgattt tcaacaccac tgcggatttg cttttgacat gtgtgatctg      2460
     gtgtggggat tttcggacac tttttgtaaa actagatatc ctctcaaggt agttcatacg      2520
     tccgctcaca ccacacacaa tctaattctc ttgtctgatt ttgagcaaga tgagatcaag      2580
     gaattgctta aacgattccc tgatgtcatc gatgctccct tgggtcgcat taaaggtgtc      2640
     caacaccgca ttaaattaat tgaagagcgc cccaagcgac aacgcccata cccggtttct      2700
     cagcacaagc atgaggaaat ttgccgtcag gtcgatgaca tgttaaagct tggtgtcatt      2760
     cgtaaaagca aatctcctta tgctcacccc attctgttac gtgagaagcc ggatggcaca      2820
     ttcagatttt gtgtcgattt tcgccacata aacaaactga ctcccaacga cagtttccct      2880
     atgcccagaa tccaggacat tttacgacgt ctagctgacg ccaaatacct tagcacaatg      2940
     gatgctgaaa aaggttattg gcaaattgct atggaagaaa agtctaaaaa atacactgcc      3000
     ttctgcactg aaaggggcct gtttgagttt aattgtatgg cctttggact caagaacgct      3060
     ggtgcttctt accagcgcat gatgaatgag ttacttgagg gtctgaccaa tttttgcctt      3120
     gtttacctgg atgacgtgat cgtctttagt aagacatttg gtgatcataa gcgtcatctg      3180
     gaaattgttt tgaagaggtt tcgggacgcc ggacttactc ttaaacgttc taaatgtttt      3240
     tttggcaaat cttgggttga atttttagga catacggtct ctgaaaatgg catcgggatg      3300
     aaggcggacg cagtcaaagc gatccaaaag atctcatccg acaccatcaa gactcgcaaa      3360
     gacctgaaag ggttcttggg tatgattggg tggtaccgac actttattga gcgtttcgcc      3420
     gacctcgctg agcctctaaa tgagctgacg tcaccgaaac gaaagtttaa atggtccccc      3480
     aaagcactcc aagcttttga aaacctgaaa tctgctattg tttccgattt ggttcttgcc      3540
     caccctcttt ttggcaaacc attcattgtt cgcacggaca gtagtagaac aggtatggga      3600
     gcagtcctct cccaaattaa cgatgcgggt gaggaaaaag ttatttcttt cgccagtaaa      3660
     acgctcaacc ccgcacaaag aaattattcc acttcggagc aggaatgtct agccgtagtt      3720
     tgggggttgg agaaattccg cgagtacctc gacggacacg agtttattct ccaaaccgac      3780
     aattccgccc ttgtctacct ggacaccatg aaaaattcca accaacgcct tatgcgctgg      3840
     tcttggaaac tccaggagtg gtccccttat atacaacata ttaagggccg agacaacgtc      3900
     gtagctgact ttttctctcg tcattccagc cccgacaata cacaaatcga gagagagggt      3960
     gactatatgt atcctccgat ccgtgtatgc aagctctctc tcacgtgtaa tttagaccgt      4020
     gacgttattc gcgcacacca agaacagtgt ccgggtgaaa tggccgagaa ttatgctggt      4080
     cccgaatttt ccactattaa tggagtaatt tacaaaattg tgggcaataa gacgcttccc      4140
     gtcatcccca caactttact ccccaaattt ctggccgagt ttcatgactc gccacatagt      4200
     ggtcacttgg gcgtcgagaa gacaaagcgc aaaatatcct ctcgtgcatt cttcacgcac      4260
     atgcacaaac ggatatccga atatattcgg agttgcgata tttgtcagcg cgtcaaaata      4320
     tcgaatcaga aaccccctgg tctcttacag tcatctccca cagaagctcc ttgggagacg      4380
     ctttacaccg acttaatggg tccgtatgta aaatcacatc ctggggggta tacacatatc      4440
     ttagtcgtaa tcgacggctt tagcaaatgg acggaaattt ttcctctccg taatgctacc      4500
     gccgtcgcag tgggcaaggt tctggaagaa caagttttct gccactttgg catgcccaaa      4560
     actctcgtga gtgataatgg cacgtctttt acggccaata tcatctctta tttatgtaaa      4620
     caatggcagg ttcagttaaa atttacctcc ccttaccatc ctcagtcaaa tttgacagaa      4680
     cgagagaacc gtaccattaa aactatgatt cgagcgtatt tagacggtca gccacataaa      4740
     aactggccta aatatctccc atttttccgg ttcgcaatta actcttctgt tcaggactcg      4800
     accggtttct ctccggctaa aattttactt aataaagagc tttccgtccc ttttgacatt      4860
     tccactcaat tttccgaggc agaattaact ctcttaaaaa gttcaatcga gaagcctcag      4920
     mgcgacatwa tttttgatag ggctcaggaa tactctaaat tgctctctct agttacagat      4980
     aacctaaacc gagccaaagc aaagcaaaaa cacgactatg accagagacg gcgccacgat      5040
     gagtttcgcg tgggagattc cgtcgtcatt caatccacga tccggtctga taaagataaa      5100
     ggcgtcgcag ccggactcgc cccactttac cgcccsgata ttgcccagat ccacgaagtc      5160
     ctctccaatc ttaactacaa aatmatcttc gaggacggaa cgatttatgg acccatccat      5220
     attcaacgct tacggcgata catccatcgt gacgcagatc cttctgctcc gccacaactt      5280
     tcaccagcca cagagccatc accaccatgt gaagttgtcg tgtcaccaca taattttgac      5340
     aataatgtag atattaattt acgtacagat tctaatattg atattaatct tactacaggt      5400
     gcccctgaca ccatttcccc tcttccttcc actacgacga catacaacgg gatgccctct      5460
     ctcgtggacg aatcggcagc acagccgccc attcgccgca gtacccgctc aacacgacga      5520
     cctgcacggt acggtccgtt gcgcccgaat tcgcagcagg atcctccttc ctcccagcac      5580
     cgtcaaatgc ccctcttgac cccctacaca gcgcgagact aacctctcaa acagtttgtg      5640
     gccccttttc cacgcccaca cacggcgcga gtctaaaccc tcagacagtt cgtgacccct      5700
     catcgtcacg gcacttgggt tggttgggtg gatctctgcc tgattttatt ttggtcgtct      5760
     agtgaatatg ctggscgtta tgggtgcctg ctccgacgca cgattgagga aattccccgt      5820
     cgcgtagctt tatawatatt ttttttgaca tgatttattt tgatttgata tacatttttt      5880
     tatttgttta cctgtacaca ttttgtttac atgattcagt tatgtatctt gtttagttat      5940
     aagtatgcac aattaattat ggtttttttm tctacctktc tktaaaatta attgtacaaa      6000
     cgttggaacc tttcctaccc ttatggtccg ttaggtcccc tttagtggtg gcg             6053
//
ID   Gypsy-6_FoCa-LTR repbase;    DNA;    INV; 487 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Folsomia candida genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_FoCa-LTR.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-487
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2581-2581 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 487 BP; 131 A; 123 C; 78 G; 155 T; 0 other;
     tgtaacccgt accactggtg ctgatcacac cagtgatacg ggtctcaatc cgacccaccc        60
     ggggagaaat ctatcccttc tgccatctgg caatagccgg aagatctttc tcccactcgg       120
     gaagaacgag gcaaccttgc tctcgtctca gctttctttt cctccttctt tttctctctt       180
     tggaaagaca ttcagtctaa tacctcctta tgagcaacat ctttatttta gggttcttct       240
     tctttaaata tttttatagc gtgtaaaata attcatattc cagctttaaa ataaatatta       300
     gttatttaag agagcccccc tttgtgttgc cgttatcatt taactgctct tcaccgaaaa       360
     gtcgggataa cttcccccca ggaagttaga attaggtcgc gaatagggac ataagtacat       420
     ataagaggga acatatcaat ttcacatcat cctcccttcc cattacaatt caaccatatt       480
     cgttaca                                                                 487
//
ID   Gypsy-6_HeAr-I repbase;    DNA;    INV; 4145 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4145
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5556-5556 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..4002
FT                 /product="Gypsy-6_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEHARPPSELSLDGGPASRAEAWKRWRQQLTLFLKAS
FT                 GAYTETAGVQASLLVNLIGPEGFDIYQTFTFDKEEDRDDIRILLEKFDSFF
FT                 VSKLNITLIRYKFFTRNQEEGESIQQYVTALRLLSKNCNFKELEDELIKDR
FT                 IVCGIRSLRVRDRLLRCEDLNLDKAVKLCQAEEISRESEQQMDAVGTSSGV
FT                 AQVDVVGAQRRRGRGSAGGGRRGARRGAAPSPHLCARCGGLSPRCQAGNCP
FT                 ANQCTCFVCGNRGHFAKVCKANAFYKGGGTARVCDIKHRSESESDDGDSFF
FT                 ISMIEGNKRLGEWFEILSCGSGTEKFKLDTGADINVMSFERFLELGLDVSI
FT                 LKCNKVIKLQSYSGDVIPVKGTCYIACVYKGKQYELKFAIADMKCQSVLGR
FT                 ISCIQLNLIKRIHSLNLSQYDDLFDGIGCLPGKYHIVIDKSVRPVISAARK
FT                 IPLSLRDQLAEELKRMERYGVIRKVTHPTDWVHPLVIVAKKNNTIRVCLDP
FT                 RELNRAVRRAHFQLPTVTELAARLHGATHFSVLDANSGFWAVQLDQESADL
FT                 CTFISPFGRYQFLRLPFGINCASEVFHGKIRQLLEDLEGVDSFIDDIIVWG
FT                 KDKEEHDRRLDALLNRAREINLKFNKAKCKIGVREVTYLGHIFDRNGMRPD
FT                 SNKVKAITEMPEPTDRKSLERFLGAVNYLSKFIPKYSELALPLTNLLRKDT
FT                 EWLWECAERSAFQSLCRAVSSAPVLALYDVSAPVLVSVDASAHALGAVLMQ
FT                 AGRPVEFASRTLTDTQRRYAQVEKELLAIVFACERFHQYIFGKKRVVVESD
FT                 HKPLESIFKKPLMSVPARLQRMMLRIQGYDLIVSYKPGKYMFIPDTLSRAP
FT                 LPDLYEDNIMSKNIMYQVAMIVNNIPISCNKLCEIKKASRDDREISELIKC
FT                 INSGWPEHKCKVEDVVKPFWSMKEELYEVDGVVFKNDIILIPSSLRGEMLR
FT                 VVHEGHQGIDRCKRRARQAIFWPNISRDIELFVKRCSICQECLNSPAKEPL
FT                 LPVEIPSIPWNKVASDIFEWKRKYFLLIVDYYSSYVEVCELPNITSASIIK
FT                 EIKQIFARHGIPELLVTDNGTQYCSREFRRFAREWGFTHITSSPNYPQSNG
FT                 KSERAVQTVKSMLIKCLRDNSDFQLALLNYRNTPRDGLSSPSQLLMSRQLR
FT                 CKLPVSVNMLKPKVVEEHETMLQKQIISKRWFDRNTKVLPELKCGDEAICL
FT                 NGKNKRTRCKVIGQAGFPRSYFVETSCGNKVRRNRRHLIKCEPIPVAIDVA
FT                 PASSDQERGIQPNEKDAAGPSVTSSGIPPGPLTRAKAKLFTSIESLF"
XX
SQ   Sequence 4145 BP; 1182 A; 733 C; 1071 G; 1159 T; 0 other;
     tggtgacagc ggtgatgaaa attttttcaa aatttattat aaaatacgta ttttggtgca        60
     attttatcga caaaaataat ggaacacgct cgcccaccat ccgagttgag tttggacggc       120
     ggtcctgcaa gccgcgcaga ggcgtggaaa cggtggcgac aacaactcac gctgttcctg       180
     aaagcttcgg gtgcctatac agagactgct ggggttcagg cgagtctact ggtaaattta       240
     attggtccgg aaggttttga catataccaa acatttacgt tcgataagga ggaggatcga       300
     gatgatatca gaattttact tgagaagttc gatagttttt ttgtttcaaa attaaatatt       360
     acactaattc gatacaaatt tttcactcgg aaccaagagg aaggcgaatc aatccaacag       420
     tatgttactg cgttacgcct cctttcgaaa aattgtaact tcaaagagct tgaggacgaa       480
     ttgatcaaag atagaattgt gtgtggcatt cgaagtttaa gggtgagaga tcggctgttg       540
     agatgtgagg atctgaatct cgacaaagct gtaaaactat gccaagccga ggaaatatcc       600
     agggaatccg agcagcagat ggatgctgtt ggcacgagtt cgggagtggc gcaggtggac       660
     gtggttggcg cgcagcggcg acgaggtcgc gggagtgccg gtggcggccg gcgaggcgcg       720
     cgcaggggcg cagcgcccag cccgcatcta tgtgctcgct gcgggggcct gtcaccgcgc       780
     tgtcaggctg gaaattgtcc agcgaatcaa tgcacgtgtt tcgtgtgtgg aaatcgtggt       840
     cactttgcga aggtgtgcaa agcgaatgcg ttttataaag gtggtggtac agcgcgcgta       900
     tgcgacatca aacaccgaag tgagtcagag tcggatgatg gtgattcatt ttttatttcc       960
     atgattgagg gaaacaaacg actaggtgag tggtttgaaa tattatcgtg tggcagtggt      1020
     accgagaagt tcaaacttga cactggtgcc gacattaatg ttatgtcatt tgagagattt      1080
     ttagaattag gtttagatgt tagcattttg aaatgtaata aagttataaa gttacaatct      1140
     tacagtggcg atgtaatacc ggtaaaggga acgtgctata tagcttgtgt ttataaaggt      1200
     aaacaatatg aactgaaatt tgctatagcc gatatgaaat gtcagagtgt gttgggacgg      1260
     atatcgtgca tacaattgaa tttgattaag cggattcatt cattaaattt gtctcaatat      1320
     gatgacttgt tcgatggtat aggatgtttg cctggtaaat atcacattgt gatagataag      1380
     tcagtacggc ctgtcatctc agcagcgagg aaaataccac tgagtttacg ggaccagttg      1440
     gcggaagagc tcaagcgaat ggaaagatat ggggtgatca gaaaggtcac acatccaact      1500
     gactgggtgc atcctttggt catagtcgct aagaaaaata ataccattcg tgtttgtcta      1560
     gacccgcggg agctgaatcg cgcagttcgg cgcgcacact ttcagctgcc caccgtgacc      1620
     gagctggcgg cacgcctgca cggcgccacg cacttctccg tgctggacgc taactccggt      1680
     ttctgggcgg tgcagcttga tcaggagagt gctgacttat gcacgtttat cagcccattc      1740
     gggaggtacc agttcttacg cttaccattc ggaataaatt gcgcttcgga agtgtttcat      1800
     ggtaagatac gccagcttct agaagatttg gagggcgttg acagttttat tgatgatatt      1860
     atagtctggg gaaaagataa agaggagcac gacagaagac ttgatgcttt attaaatagg      1920
     gctcgtgaga taaatttaaa atttaataaa gctaagtgta agataggagt tcgggaggta      1980
     acatatttag ggcatatatt tgatcggaac ggcatgaggc cggattccaa taaagtaaag      2040
     gctataacgg aaatgccaga gcctacggac agaaaaagtt tagaacggtt tttgggtgcc      2100
     gtcaattact tgtctaagtt tataccaaaa tattctgaat tggcattacc actaactaac      2160
     ctccttcgta aagacacgga gtggttgtgg gagtgcgctg agcgcagtgc atttcagagt      2220
     ttgtgtcgag cggtgagcag cgcgccggtg ctggcgctgt acgacgtgag cgcgccggtg      2280
     ctggtgtcgg tggacgcgag cgcgcacgcg ctgggcgcag tgctcatgca ggcgggccgc      2340
     cccgtcgagt tcgcgtcacg cacgctcacc gacacgcagc gccggtacgc gcaggttgag      2400
     aaggagctcc ttgccattgt gtttgcatgt gagaggttcc atcaatatat ttttgggaag      2460
     aaacgtgttg ttgttgaatc cgatcataag ccattggaga gtatttttaa aaagccgttg      2520
     atgtccgttc cagcacgctt acaaagaatg atgttaagaa tacaagggta tgatttaatt      2580
     gtgagctata aaccgggaaa gtacatgttt attcccgata cactgtcgcg tgcaccgttg      2640
     cctgatttat atgaggataa tataatgagt aaaaatataa tgtatcaggt agcgatgatt      2700
     gttaataaca ttcctatttc atgcaataaa ctatgtgaaa taaaaaaggc atctcgcgat      2760
     gatagagaaa taagcgagct tatcaagtgc attaactcgg gttggccgga gcacaaatgt      2820
     aaagtagagg atgttgttaa gcccttttgg tcgatgaaag aggaattgta tgaagttgat      2880
     ggtgtggtgt ttaaaaacga tataatttta ataccttctt ctttacgggg tgaaatgtta      2940
     cgggtcgttc atgagggcca ccagggtata gaccgctgta agcgccgagc gcgccaagca      3000
     atattttggc caaacatttc tcgtgacatt gagttatttg ttaaacgttg ttctatatgc      3060
     caggaatgtt taaattcgcc tgccaaggaa ccattattac ctgtggagat tccatcgatt      3120
     ccgtggaata aagttgcatc tgatattttt gaatggaaga gaaagtattt tcttttgatt      3180
     gtggattatt attctagcta tgtggaagtt tgtgagttac cgaatataac gtcggcaagc      3240
     attataaaag aaattaagca aatatttgcg aggcatggca ttcctgaact acttgtcaca      3300
     gataatggca cacagtactg cagtcgcgag tttagacgat ttgcacggga gtgggggttt      3360
     actcacataa catcatctcc taactatccc caatcaaatg ggaaaagtga gcgcgcagtt      3420
     cagactgtca agtcaatgct gattaaatgt ttaagagata acagtgactt tcagctggcc      3480
     ttacttaatt ataggaatac tccaagagat ggtcttagtt ccccatcaca gttactaatg      3540
     agccgtcagt taagatgtaa gttaccagtt agtgttaata tgttaaaacc aaaagtagtt      3600
     gaggaacatg aaacaatgtt gcagaagcaa attatttcta aaaggtggtt cgatagaaac      3660
     actaaagttc ttccggaact aaaatgtgga gacgaagcta tttgtttaaa tgggaaaaat      3720
     aaaagaacaa gatgtaaagt tatagggcaa gcgggatttc ctcgttctta ttttgttgag      3780
     acaagctgtg gcaataaagt aaggcgcaac cgacgacatt tgataaaatg tgagccaatc      3840
     ccggtggcaa tcgatgtggc acctgcttcc tctgatcagg aaagaggtat tcaacctaat      3900
     gagaaagatg cagcaggtcc ttcagtaacc tcgagcggaa tcccgcctgg tccattgact      3960
     agggcaaaag ctaaactatt tactagtatt gaatctttat tttagagtct tgtttcattt      4020
     taattttctt tcaattaatt gtgttaggtt tttgttccct gagaatttta agatttatgt      4080
     tatttaaaga tttatgttat tttaaggggg gaagtgtatg tgtgttatgt tcttaaaagg      4140
     ggagt                                                                  4145
//
ID   Gypsy-6_HeAr-LTR repbase;    DNA;    INV; 65 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-65
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5544-5544 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 65 BP; 19 A; 8 C; 12 G; 26 T; 0 other;
     tgttgtgtaa tgagttttta tatgaataaa tcagttgttg tcaagcactg acgtctatta        60
     ctaca                                                                    65
//
ID   Gypsy-6_HMM-I repbase;    DNA;    INV; 4278 BP.
XX
AC   CAEZ01007275;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_HMM_;
KW   Gypsy-6_HMM-LTR; Gypsy-6_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4278
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007275; Positions   28835   24558.
XX
CC   Positions [1458-2006] - Reverse transcriptase
CC   Positions [3116-3580] - Integrase core
CC   'ATTTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..2537
FT                 /product="Gypsy-6_HMM-I_2p"
FT                 /translation="MSFFGSTLGYDHHSQQWDIYISRFKQYCTANNISEEN
FT                 DKAGVKRRALLLTSFAEDTYRIAKDLAYPTDLENIEYDTLLQKLTSHFVVK
FT                 KSTFAEQYVFYKAEQHPGEDLTDWAARVRSLAQHCEFKSDLDTALRDRFVL
FT                 GLENNKEKERLFAENIETFTFNKALELTTNIRCARLALHRASIEPATSHRH
FT                 ATDASGATEVFAVRARAAATAKLNNVKPVCAVCGYRNHSKNECRFANYTCH
FT                 KCNTKGHLQRMCGKQIIKYNNFLSKDEDEKCNLNSFNIKCINGAPMTETVL
FT                 IGSERLLCELDSGSAVSVLPQHVYERCFAGRAELHSCRVVLNCYNGSKMHP
FT                 LGFIVVPVEYEGHTQMLKIYVLNCSVHQPVLLGRDFISAFNLQLCRMTCHS
FT                 ITDDKVCIGLTETFKELFVDELGRFNKYKITLKIKPNSQLKFFKPRPVPFA
FT                 LKSKVESELKRLVSLGILEKIDHSDFATPIVPVLKADGNVRICGDFSVTLN
FT                 KVLYTDNYPLPRIEELFSKLHGGVEFSKIDLSRAYNQLVLDDSKNLTCINT
FT                 HKGLFRFNRLVFGLANAPFIFQRAMEQLLSDIEGTCIFLDDILITGPTKTM
FT                 HLQRLQLVLSRLQDAGLRLKRDKCEFFKSSVEYLGFIIDKNGLHKSNQKIK
FT                 AILDAQCPKNVSELKSFLGMVNYYRCFVPNTSSILNPLHSLLKKGEPWIWG
FT                 KLQNDAFTKIKQELISDRVLAHYNPESTTIVTADAGPAGLGAVLAQRQADG
FT                 SERVVAYASRSLSKAERNYAQIQKEATAIVFPVKKFHHYLYGRTVPFTLRT
FT                 DHKPLLSIIGTKKRHS"
FT   CDS           3008..4198
FT                 /product="Gypsy-6_HMM-I_1p"
FT                 /translation="MWWPNIDKQIEEKVGSCSLCASFRSSPPRAPLAPWPY
FT                 PERPWERVHLDFFAVHEKNFLIVVDAHSKWIECYPMSSTNSDAVIMKLYEL
FT                 FSRFGLVHTLVTDNATNFTSSQFNNFCISNNIKHVTIAPYHPASNGQAENT
FT                 VKTVKKALKIILKTESNQRNINVKLLKFLFDYRNSTHCTTGYSPAELMLGR
FT                 KLFSTLDFLKDTRTSPNSMSLASAAKTAVNYKQDLQSKQYGGGRNVCFNIG
FT                 DQVLVKHFYYNGNKCTWHLGVIRSKIGSRLFMVYIPVLNLLIKKHFDQLLK
FT                 YTGVTCVPKTDEVGPVANSETTLDQVGEREKLSEETEPSDPDVRINVDQSN
FT                 KSNVDSNSRMGTLPVVDKNNVMLPGEDTTPVSVTAESGRRYPIRKTRNQKN
FT                 VKL"
XX
SQ   Sequence 4278 BP; 1360 A; 700 C; 960 G; 1258 T; 0 other;
     aattggcgac gagggactta ccgacgtttg caacaacgtg tataaagtgc atttcattat        60
     aaattttcga ggataatacg aaaatgtcgt tttttgggag tacactcggt tacgatcacc       120
     actcgcaaca atgggatatt tatatcagtc ggtttaagca atattgtaca gctaacaata       180
     ttagcgagga aaacgataaa gcaggagtga aacgtcgagc cctgttattg acatcttttg       240
     ctgaggacac gtaccggata gcaaaagatt tagcctaccc tacggatttg gaaaatattg       300
     aatatgatac gttattgcag aagctcacca gtcatttcgt cgtaaagaaa agtacgtttg       360
     cggaacaata cgtattttat aaagcggaac agcatcctgg ggaagaccta acggattggg       420
     cggctcgagt tcgcagccta gcgcagcatt gtgagttcaa atcagacctt gacaccgctt       480
     tgagggatag atttgtgttg ggactagaaa acaataagga aaaagagaga ttgttcgcag       540
     aaaatattga aacgttcaca ttcaataaag ctctggagtt aacaacaaat attcgatgtg       600
     cccggttagc attgcatagg gcgagcatcg aacctgcgac ttcgcatcgc cacgcgacgg       660
     acgcatccgg cgccaccgag gtgttcgcgg tgcgagcacg agcagcggcg acggcgaagt       720
     tgaataacgt gaaaccggtt tgtgcagtgt gcggctacag gaatcatagc aagaatgaat       780
     gtcgttttgc taattatacg tgtcacaagt gtaatacgaa aggacatcta caacgcatgt       840
     gcgggaaaca aattattaaa tataataatt ttttaagtaa ggatgaggac gaaaaatgta       900
     atttaaatag ttttaatatt aagtgtataa acggagcgcc gatgacggag acagttttaa       960
     tcggtagcga gcgattgttg tgtgagttag acagcggcag tgccgtctcc gtgttgcccc      1020
     aacacgtgta cgagcgatgt ttcgcggggc gggccgagtt gcactcgtgt cgtgtggttt      1080
     taaattgtta taatggcagt aaaatgcacc ctttaggatt tatagtggtg cctgttgaat      1140
     atgaaggtca cacacaaatg ttgaaaatat atgttttaaa ttgttctgtt catcagccgg      1200
     tacttttagg tcgagatttt ataagtgcat ttaacttgca gttatgcagg atgacatgtc      1260
     atagtataac ggatgataaa gtatgtatcg gtttgacaga aacatttaaa gagctatttg      1320
     tggatgaatt aggccgtttt aataaatata aaattacact aaaaattaag ccaaattcgc      1380
     aacttaagtt ttttaagccc cgaccggttc ctttcgcttt aaagtcaaaa gtggagtcag      1440
     aactaaaaag attagtgagt ttaggtattt tagaaaaaat agaccattca gattttgcta      1500
     ctcccatagt accggtttta aaggcagacg gaaatgtacg gatttgcgga gatttttcag      1560
     taacgttaaa taaagtttta tacacggaca attacccatt accgagaata gaagagctat      1620
     tttctaaatt acatggtggg gtcgaatttt caaaaatcga tctgtctagg gcctataacc      1680
     agttagttct agacgattct aaaaatttaa cgtgcattaa tactcataag gggttattcc      1740
     gttttaatag attagtgttt ggattagcta atgcaccttt tatatttcaa cgagcaatgg      1800
     agcagttatt atctgacata gaaggaacgt gtatcttttt agatgacata ttaataacgg      1860
     ggcccactaa aactatgcat ttacaaagat tacaattagt cctaagtagg ttacaagacg      1920
     cggggctacg attaaagcgg gataaatgtg aattttttaa atcttcagtg gaatatttag      1980
     gttttataat tgataaaaac gggctgcaca agtcaaatca aaaaataaaa gcaatactcg      2040
     atgctcagtg tccaaaaaac gtcagtgagt tgaagtcttt tctcggcatg gttaattatt      2100
     ataggtgttt tgttccaaac acgtcgagca tattgaatcc gttgcattca ttattaaaaa      2160
     aaggcgagcc atggatttgg gggaagttac agaatgatgc atttacgaaa attaagcagg      2220
     aattgatatc ggatcgagtt ttagcacact ataaccccga gtcgacgacg atagtgacgg      2280
     cggacgcggg gcccgcgggg ctgggcgctg tgctcgcgca gcggcaggcg gacggctcgg      2340
     agcgcgtggt ggcgtacgcg tcgcggtctt tgtctaaggc ggaacgtaat tatgcacaaa      2400
     tacagaaaga agcgacggcg atagtatttc cggtaaagaa atttcatcac tatttgtacg      2460
     ggcgtacggt tccatttacg ttacgcactg atcataagcc gttgttatcg attatcggaa      2520
     caaaaaaaag gcattcctga actagccgca aaccgtttgc agcgttatgc attattccta      2580
     tccgcgtata attataatat agaatttgtt aagggtgaag ataatacagc tgatttttta      2640
     tcgcggtctg tgccattgga tatgacagtg agatagacga taaggaaatt gataagtcta      2700
     gtattgtaaa ttttgtgtcg gatatttttt aaaacctgta acggttaatg aaattaggaa      2760
     agagactgag agagatgaaa ttctaaaaat agtgattaat cacttaaaaa atgggtggcc      2820
     gcgtaacgtg aatgacgtga aagtgagacc ttattttttg tgtcgtttag aattgtcttt      2880
     agaaaatggt tgcttgttac ggggacataa gattataatt ccagcagttt ttcgagatag      2940
     gttactaaat gaattacatt cctctcattt cggaatagta aagattaaaa cggaagccag      3000
     gagtcgtatg tggtggccta atatagataa acagattgaa gaaaaggtag gttcatgcag      3060
     tttgtgtgca tctttccgca gttccccgcc tcgagctcca ctggctccct ggccttatcc      3120
     tgaacgtcca tgggaaagag tacatctaga tttttttgcg gtgcacgaga aaaattttct      3180
     tatcgtagtt gacgcccatt ccaagtggat agaatgttat cctatgtctt ccacaaatag      3240
     cgacgctgtt attatgaagt tgtacgaatt atttagtaga tttggtttag tccatactct      3300
     tgttacagat aacgcaacga attttacttc gagtcagttt aataattttt gtataagtaa      3360
     taatataaaa catgtcacga ttgcacctta tcatccggca tcaaatggcc aagcggaaaa      3420
     cacggtgaaa actgttaaaa aggcactaaa aattatttta aaaactgagt ctaaccaaag      3480
     aaatattaac gtaaaattat taaaatttct gtttgattat agaaattcaa cacattgcac      3540
     tacgggatat tcacccgcag aactaatgct cggaaggaag ttgttttcca cattagattt      3600
     tttaaaagat actcgaacgt cacctaattc gatgtcgttg gcatctgctg ctaaaacagc      3660
     agttaactat aaacaagatt tacaaagtaa gcaatatggc ggtggacgca atgtttgttt      3720
     taacataggt gaccaggttt tagttaaaca tttttattat aatggaaata aatgtacatg      3780
     gcatttagga gtaattagaa gtaagattgg ttctagactt tttatggtat acattccagt      3840
     gttaaattta ttaattaaga aacattttga tcaattgtta aagtatactg gcgtaacttg      3900
     tgttccaaaa acagatgaag tcggcccagt agcgaattct gaaactacat tggatcaagt      3960
     gggagagaga gagaagttat cggaggaaac agaaccatcg gatcctgatg ttcgaattaa      4020
     tgtagaccag agcaataaat ccaatgtaga ttcaaattct aggatgggca cattgcctgt      4080
     tgttgataaa aacaatgtca tgttacctgg tgaggacact actccagtgt ccgtcacggc      4140
     cgagagtggt cggaggtatc ctattcgtaa gacacggaat caaaaaaatg taaaattgta      4200
     ataaacctat tagtttcgtt tacttgtcaa ttggataatt gtttttattt gtatattttt      4260
     atattattgg tggaggga                                                    4278
//
ID   Gypsy-6_HMM-LTR repbase;    DNA;    INV; 125 BP.
XX
AC   CAEZ01007275;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_HMM_;
KW   Gypsy-6_HMM-I; Gypsy-6_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-125
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007275; Positions   24557   24433.
XX
SQ   Sequence 125 BP; 40 A; 18 C; 25 G; 42 T; 0 other;
     tgtagtgaat attataagtt gtgggtaagt cgaaataaag cgttggctta cccagttgtg        60
     atcggacatt aaacgtgtac aaatcagttg gcattttatt ctactattat ctcgaaaata       120
     ctaca                                                                   125
//
ID   Gypsy-6_LH-I repbase;    DNA;    INV; 4629 BP.
XX
AC   ADOQ01003365;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_LH_;
KW   Gypsy-6_LH-LTR; Gypsy-6_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4629
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003365; Positions    7162    2534.
XX
CC   Positions [1716-2189] - Reverse transcriptase
CC   Positions [3347-3763] - Integrase core
CC   'GAAA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1829
FT                 /product="Gypsy-6_LH-I_2p"
FT                 /translation="MGRHKSRRDSGRSSSKRKRDRSSSSSTSESEKRRRDE
FT                 RFNKLERIVESLDRRSQTRGSCIHKGDEQMIPLFDPSKDDLVIEKWIEHVD
FT                 ELAAQYDWDEKAIMRLIPSRLKGHARLWYDTRQQLAVTWTETKEILRQQFR
FT                 KSVPFSKLFKEAALYETSLGQSLGDYCFQKLNKLRKLNISIPDEYLIDAVI
FT                 GGITDTHVARTVRSAQHTDANSLYAYMTTLGNVPVKSERGKVFGSGNRNDR
FT                 KEQHSNASQQGRSRASNEASTDNKASDDKDKGKHQIKCFNCGNIGHIAKKC
FT                 RKPRVECERCHRLGHCSNECPRQKNVNVVKGAECATNLYERAMFVNQHKVR
FT                 GLIDTGSSCTLLRASIADKYNITVLLTPNVVLKGFAGQLVTSDKSAFINVQ
FT                 IMEASAQVNAIIVPDCYLNYDVIIGRDFLEQEHIVTIKRRNTLLFKQLALI
FT                 KNASDDIVTANFLDVITTKVSTGDTAKSAQRPYGQLIQEFSDCISSSMRNL
FT                 GKTNSASLSIRCTSDVPIVYRPYRLAEPEKQIVRGIVQELLEHNIIRESSS
FT                 PYASPILLVKKKNGEYRMCIDYRKLNAITIKDKYPILY"
FT   CDS           1979..3343
FT                 /product="Gypsy-6_LH-I_1p"
FT                 /translation="MPFGLTNAPAVFQRLMDRVLGNLKDSIAFPYLDDVII
FT                 PSRTIEEGIARLRQILEVFRAHQLTLKIDKCTFFAESIEYLGREISEEGVR
FT                 PGRRKVDAILRMESPNSVKQVRQLVGLASYFRRFIENFAGIIEPLTRLTRK
FT                 DVPWKWEEAQETAVKTIKARLITRPVLAIFDPSKTTEVHTDASAVGVGAIL
FT                 LQENNGKMTVIAYYSKQTTSDQRCYHSYELETMAVVLALRYFRVYLLGLKF
FT                 KVVTDCAALRTTFSKRDLLPRIGRWWLEVQEFTFDIEYRAGSKMAHADALS
FT                 RNPIPIELEVTQVDVTEGDWILTAQLQDDQLLRIRSILSCGKSTSETKHYF
FT                 DEYLVKDDKLYRRLDDKAKAWVVPRNARMQICKLCHDDAGHLSVEKTLERI
FT                 KRNYWFAGMRRFVTKYVHACLNCAYYKHTAGKKQCKLNSIDKVPVPFHTIH
FT                 VDHVGPFELS"
XX
SQ   Sequence 4629 BP; 1469 A; 915 C; 1129 G; 1116 T; 0 other;
     aatcagaagt gggataaaac aacgtgctta atacttgcga cctcctgagt gatacgacga        60
     atctgtcggc ggaaatgggt cgccataagt cacggcgtga ttctgggcgt agcagctcaa       120
     aacgcaaaag agatcgttcg tcatcgtctt ctacgtctga gagtgagaag aggcgacgag       180
     atgagcgttt caataaatta gaacgcattg tggaaagctt ggaccggcga tcgcagacac       240
     gaggatcgtg catccataaa ggagacgaac aaatgattcc tttattcgat ccatcaaagg       300
     atgaccttgt aatagaaaaa tggatcgaac acgtggacga actagcggcg cagtacgatt       360
     gggacgaaaa ggcaatcatg agattgatac cgtctcgttt gaaaggccat gctcgattat       420
     ggtacgatac gcgacagcaa ctagctgtta catggacaga aacaaaggaa atattacgac       480
     aacaatttcg taagtctgta ccgttcagca aattatttaa ggaagccgcg ttgtacgaaa       540
     ctagtctggg tcaatcgctt ggggactatt gctttcagaa attaaacaag ttacgtaagt       600
     taaatattag tatcccggat gaatacttaa tcgacgcagt aatcggcgga attacagata       660
     cacacgttgc aagaacggta cgttccgcgc agcataccga tgctaactca ttatacgcgt       720
     acatgactac tttgggaaac gtgccggtaa aaagcgaaag aggtaaagta ttcggatctg       780
     gtaatagaaa tgatcgaaaa gagcaacatt cgaacgcgtc gcagcagggt cgatcgcggg       840
     cctcaaacga agcgtcgacg gataacaagg ctagtgacga caaggataag ggcaaacacc       900
     aaattaaatg ttttaattgc ggtaacatag ggcatattgc aaaaaagtgt cggaagccgc       960
     gagtagaatg cgaacgatgc caccgcttag ggcattgtag caacgaatgt ccgcgtcaga      1020
     aaaacgtgaa cgtagtaaaa ggggccgagt gtgccacgaa tttatatgag cgagcgatgt      1080
     ttgtcaatca acacaaggtt agaggcttaa tagatacggg aagtagctgc acattgttgc      1140
     gagcatccat agctgataaa tataatataa ctgtattgtt aacaccgaac gtcgtactga      1200
     aaggttttgc cggacaattg gtaacaagcg ataaatcagc attcattaat gttcagatta      1260
     tggaggcatc ggcgcaagtt aacgcaataa ttgtacctga ttgttatctt aattatgacg      1320
     taattattgg tcgagacttt ttagaacagg agcatattgt aacgattaag cgccgtaaca      1380
     cgttattatt caagcagtta gcgctcatta agaatgcatc tgacgacatt gtcactgcta      1440
     actttttgga tgtaataact accaaggtca gtacaggcga tacagccaag tcggcacaac      1500
     ggccatacgg tcaactcatt caagaattca gcgattgcat ttcctcgtcg atgcgaaact      1560
     taggaaagac aaattccgcg tcactaagta tccgctgcac ttcagatgtg ccaattgttt      1620
     atcgtcctta tcgtttagcc gaacccgaaa aacagatagt gagagggata gtgcaggaac      1680
     ttttagaaca caacattatt cgcgagtcaa gttcaccgta tgcaagccct attttattag      1740
     tgaaaaagaa aaacggtgaa taccgtatgt gtatagatta tcgtaaactt aatgctatca      1800
     cgataaaaga taagtatcct atcctatatt gattgaggat caaattgaca agttaggagg      1860
     taatcggtat ttcacgggcc tagacttagc atccggatat taccaagtac cggtagcaga      1920
     tgattccatt gaaaaaacgg cgtttgtgac tccggagggt cattacgaat tcctgcgtat      1980
     gccctttggg ctgactaacg cgccagccgt ttttcagcgc ctaatggata gggtactagg      2040
     aaatttaaag gattctatcg cttttccgta cttggacgac gtcataatac catctagaac      2100
     tatagaagaa ggcatagctc gattacgtca gatattggaa gtatttcgcg cgcaccaatt      2160
     aactcttaag atagacaagt gcacattctt tgcagaatcg atcgaatatc taggaagaga      2220
     gattagcgag gaaggggtac gacccgggcg acgcaaggtc gacgcgatat tacggatgga      2280
     atcaccgaat tcagtaaagc aagtacgaca gctggtaggg ttagctagct actttaggcg      2340
     gtttattgag aatttcgcag ggattattga accgctaacg agattaacaa ggaaggacgt      2400
     accgtggaaa tgggaagaag cacaagaaac agctgttaag acgattaaag ctaggcttat      2460
     aacccggccg gtattagcaa tctttgatcc gagtaaaacg actgaagttc acactgacgc      2520
     gagcgcggta ggagtaggtg ctatactgtt acaggaaaac aatggtaaga tgactgtaat      2580
     agcgtattac agtaaacaaa ctacgtcgga tcaacgttgc taccattcgt atgagttaga      2640
     gacgatggca gtcgttctgg cactacgata tttccgggta tacttactag gattgaagtt      2700
     taaagtcgta accgattgtg ctgcactgcg aacgacgttt tctaagcgag atttgctacc      2760
     aaggatcggt cgatggtggc ttgaagtaca agaattcaca ttcgatatcg agtaccgggc      2820
     aggatcaaaa atggcacacg cagatgctct tagtagaaat ccaataccaa tcgaattaga      2880
     agtaacacag gtggacgtga cggaaggtga ttggatactg accgctcaat tgcaggacga      2940
     ccaattgtta agaatccgat caattctttc atgcggaaaa tcgacgagcg aaacaaagca      3000
     ctattttgac gaatatctag ttaaggatga taaactatac agacgactag atgataaagc      3060
     taaggcatgg gtagtaccac gaaacgcgcg gatgcaaatc tgcaaattat gtcacgacga      3120
     cgctgggcat ttaagcgtag aaaagacatt agaacgaatc aaacgtaact attggttcgc      3180
     aggtatgcga cgttttgtga caaaatacgt acatgcctgt ttaaattgtg catactacaa      3240
     acatacggct ggaaagaaac agtgcaaatt aaatagtatc gataaagtac cggttccatt      3300
     tcatactatt cacgtcgatc acgttggtcc tttcgagctt agctgaaagc gtcataagtt      3360
     tcttttcgtt atggtggacg gctttacaaa gtttacgctg atagagccgg taaaggatca      3420
     aaagacatgt tatgttgtaa aaattctgac taatttgatc tgtctgtttg gagtccctag      3480
     caggatcatt agcgacagag gaacggcctt cacatcgcaa gcattccgta cgttttgtaa      3540
     cgcatacggc attaaacagg tgctaaacgc tgtcgccacg ccacgcgcca atggtcagtg      3600
     cgaaagatat aacaagacta tcgtacaagc attggctact acgacggctg ggcaagatcc      3660
     acgagattgg gacctagctg taaagcaggt acagagtgca ctaaatacta tgcacaataa      3720
     gggcattaat tcgactccac tgaaggcact cattggatgc gaaacaagga gcgctgccga      3780
     ggctcaactg ttatctgctg tccaggacac ggtacaccgc ctagacttag acgaattgcg      3840
     ccaggaaata aaagcgcaca ttgatcagaa tcagcgcgaa caaaagagga gatacgacaa      3900
     gatgcgatcg ggcgctagaa agtatcacga aggcgatctg gtgttggtgc aaattactag      3960
     cgaccccgca acgggtagta gtaagaaatt gcatccgaaa tttaagggac ccttccgggt      4020
     ttacaaggtc ctcattaacg atcgatacga agtcgaggac ttacgagaag ggagcagacg      4080
     acgtcgaacg gtagtggcag ccgatcgaat aaagccttgg atagcggtct tagacgcgta      4140
     aaagagtcta tagttacacg gactgagtct gacaaagtta cgttagttca gttacacggg      4200
     ccaagtctga cgagtacgac ggtgctacgt tagtttggtt atacggactg atcttagttg      4260
     atacagtagt attgaactag ttcagttaca cggactgagt ctgacagaat tacgttagtt      4320
     cagttacacg aactgaatct gacgagtacg acagtgctac gttggttcag ttacacagac      4380
     agaactagca ggcacaccgg tgctgtacta gttacacgat ttacgtctaa ttgacactgg      4440
     tactatacgg aggtattata cgaatgtcag catgctcgtt ggtattatgc gaagctgact      4500
     caattaacca cgacacactg tacgtaaaga accatagagg gctgacggat gaaaacactg      4560
     cggaaaagaa gaataactgt cacatatacg tcgtgcctga ggacaggcac tacattcaga      4620
     atggccgaa                                                              4629
//
ID   Gypsy-6_LH-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   ADOQ01003365;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_LH_;
KW   Gypsy-6_LH-I; Gypsy-6_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-288
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003365; Positions    2533    2246.
XX
SQ   Sequence 288 BP; 86 A; 61 C; 65 G; 76 T; 0 other;
     tgttggaaat attctaaaat aaaattcaaa tagcgcgggc tacagcccaa cggagcgccg        60
     cagctaggat atcgagacgg ccctgatcca tggaggggga atcgatgcac gcatagcagc       120
     atgcgtgtct tagcagtatt gcgcgactaa tcccccgtta caacggtggt ataaagctaa       180
     cgtttttata agaggaataa ccagtaaata gttttcagta cgattcagtt tgtttttaga       240
     aagcgggttt gactccctca cccccttata ttataaaagt ttctaaca                    288
//
ID   Gypsy-6_LMi-I repbase;    DNA;    INV; 5298 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_LMi-I;
KW   Gypsy-6_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5298
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3369-3369 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3906-4439] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..1009
FT                 /product="Gypsy-6_LMi-I_2p"
FT                 /translation="MWNQSPCSSVLRPQGQGLSASPLSTAEKGQCINSQVG
FT                 LDIMQPNKLSPVVHVNNPRGHADMLAPELSMVQTANLVKVEPTFTSPGPHE
FT                 QWCATTEHSNFDSSCTQQRVSVPPWISNFSRDFPQVQCAIPSVTVPSDHLP
FT                 CVTNVLNSTAGLPVSFGQNASQNYALTNVPVSGPTFATDNAPPSLVRPVNF
FT                 EQQPTKLPKLPPFAKQHPNTWFALIESIFRVSGILSEESKFVCLVGHLHDH
FT                 LDLISDLVLNPPPPPKYTNAKRIICERLSRSPDEVLHHIIHEVHLGDLTPS
FT                 ELWRRLRALVIN"
FT   CDS           1363..3843
FT                 /product="Gypsy-6_LMi-I_1p"
FT                 /translation="MEPPAARRPRPTTAGRSAGIIATSETTLNIAVRGGKR
FT                 RRRGAVAGAVPRSKRRRLHSTTRTSGTVSCNGCLFVTDCVSNIDFLIDSGA
FT                 DTSVLPPSLAPDTLVPSPTLLRAANDSTIKVLGTVHMPVHLSKDLTIKWDF
FT                 LVAQVSCPVLGIDFLRNNKFSVDIPAGILLHQTTNTRIRLSASPSARPSPH
FT                 INVDISLLQTECALLAAKLTSVTCDLTVQRLEIVELKETQSRLKEQIDIKS
FT                 RELARAREVIASLRSLRSAQQVSRAPSQSRGPNSDAQNNNTTVSHSSARPR
FT                 GVLAISSDACHRLNTTEGPPVRSRPRRLNPHKLKIAKNIIGELLEAGIVRP
FT                 SSSEWASPIHLTPKKDGTYRLCGDYRKLNDRTITDSYPVPNIQDFASQLAG
FT                 ATTFSVVDCKKAYHQIPMHEPDIPKTAIITPFGLFEYVYMPYGLKNAAQTW
FT                 QRFLDSLLRPLPQCYAYLDDILIFSKSPEEHEKHLSELFSVLDSHGVVTNK
FT                 DKCVFRQSSVIFLGHVVSADGIRPTDEKVETVQKLPPPATYHELRRFLGMI
FT                 NFFRRHIPKAAELQTPLTDALRGPNTTGDRPVLWSAEMQTAFDSLKTALAK
FT                 AITLAHPSPDATLSITTDASEVSIGAVLQQHCGEESQPLKFFSKKLSPSQS
FT                 KWSAFDRELLAVYEAVRYFREDIEGRPLTIYTDHKPLAHALKNPPADPPPR
FT                 RYRHFDLISQYTSDVQYVRGSDNLVADYFSRLAGISSVIDFHELAKAQSSD
FT                 DSISTLLKSGEHSLVLERKNIPGAPTALWCDTSSGVPRPLVPTNFRRVIFD
FT                 ALHGLAHPGARATTRLITERFVWPL"
XX
SQ   Sequence 5298 BP; 1186 A; 1593 C; 1184 G; 1335 T; 0 other;
     ccacagtggt gaccccgcgt ttcaattcac gcacaattac gctttcgtgc ctctttttcg        60
     aaactgttat tacgcgagtg cagtgaacaa tcgcgccatg tggaatcaat ctccgtgttc       120
     ttcagtgcta cgaccgcaag gacaaggatt atctgcttct ccgctttcaa ccgctgagaa       180
     aggacagtgc atcaattcac aggtgggact agacattatg cagcctaaca aactgagccc       240
     tgttgtacat gtcaacaatc cgcgcggcca cgccgacatg ctggctcccg aactttctat       300
     ggttcaaacc gccaacttag ttaaagtaga accaactttc acgtcaccag ggcctcacga       360
     acagtggtgt gctacaactg aacattcgaa ttttgactct tcgtgcactc aacagcgagt       420
     ttcggtaccg ccttggatct cgaacttttc gcgcgatttt ccacaagtgc agtgtgctat       480
     accttcagtt actgtgcctt ctgaccatct accatgtgtt acaaatgtgt tgaatagtac       540
     cgccggacta ccggttagtt ttggacaaaa tgcttcacag aactatgccc tcacgaacgt       600
     accagtttcc gggccaacat tcgcgacaga caatgcgcct ccttcgcttg ttcgtccagt       660
     taatttcgaa caacagccca ctaaattgcc aaagctgccg ccttttgcaa agcaacaccc       720
     gaacacttgg ttcgcattaa ttgaatctat tttcagggtt tcgggcattc tttcagaaga       780
     atctaagttc gtgtgccttg tcggtcatct acacgaccat cttgacttga ttagcgattt       840
     ggtgcttaac ccacctccgc cacctaagta cactaatgcg aaacgtatca tctgtgagag       900
     actttcccgc tcgcctgatg aagtgttgca tcacataatt cacgaagtgc acttaggaga       960
     ccttacacca tctgaactgt ggcgtaggct gcgcgccctt gttatcaact gattttctcc      1020
     cggacattac tttgtggtca atctggctag tgaaattgcc tgaacccttg cagctgcagt      1080
     tgctgccact tacgtcttgt tctcttgatg aaaaactatc aatagcagat cgtgcattta      1140
     agatcattaa ccgtcgcgct cccagtgtta acagtggcgc gagtgttgtt ccaaatattt      1200
     cccccccccc taccacgcac gtaggtgacg atcgcgcccg tgtgttttcg tcgcgcaacc      1260
     gtacggtgtc gtcacctggt agccgtcccg cgcaacgctc tccggactca ccagttgcca      1320
     tgatggaaac gccagcccag caacgcgctc tctcggacgc cgatggaacc acctgcagca      1380
     cgccgaccac gcccaacaac agccggccgc tctgctggta tcatagcaac ttcggagacg      1440
     acgctaaaca ttgccgtgcg cggcgggaaa cgcaggcggc ggggtgcagt agcaggcgcg      1500
     gtgccccgct cgaaacgaag acgcctccac tccacgactc gcacctctgg tacggtaagc      1560
     tgcaacggct gtttgtttgt gactgactgt gtttcgaaca ttgactttct gattgacagt      1620
     ggggcagata cgagtgtttt acccccgtct cttgcaccgg acactctcgt gccttctccc      1680
     acactgcttc gcgccgcaaa cgactccact atcaaagtgc ttggaacggt tcacatgccg      1740
     gttcatttat ctaaagactt gactattaag tgggactttc tggtcgcgca agtgtcctgt      1800
     ccggtgcttg gcatagactt tttaaggaac aataaatttt ccgtggacat tccggcagga      1860
     atcttgttac atcaaaccac taacacgcgc atccgtctat ctgcctcccc cagtgcacgg      1920
     ccgtcgccgc atattaatgt tgacatttct cttttgcaaa cagagtgcgc gctgttagct      1980
     gcaaaactta ctagtgtaac gtgtgactta actgtacaga gacttgaaat tgttgaactt      2040
     aaagaaactc agagtaggct taaagaacag attgacatta agtcacgcga gctggctcgt      2100
     gcgagagaag taatcgcttc cttacgaagt ttacgatccg cgcaacaagt gtcgcgcgct      2160
     ccctcccagt cgcgcggccc gaactctgac gcgcaaaaca ataacacgac agtttcacat      2220
     agttccgcgc gcccgcgtgg cgttcttgct attagtagtg atgcttgcca cagactcaac      2280
     acaacagagg gacctccagt gcgttccaga ccacgccgcc tcaatccgca taaactcaaa      2340
     atcgcaaaaa acattattgg cgaactgctc gaggccggca ttgtgcgacc ttcctctagc      2400
     gaatgggctt ctcctattca ccttacgccg aaaaaggacg gtacctatcg tttatgtggg      2460
     gattacagga agttgaacga taggacaatc actgatagct atcctgtgcc gaatatccaa      2520
     gactttgcta gccaacttgc aggcgcgacc actttcagcg tcgtcgactg caagaaggct      2580
     tatcaccaaa ttccaatgca cgaaccggac attccaaaaa cggccatcat tactcccttt      2640
     ggcttatttg aatatgtata tatgccttat ggcttaaaaa acgccgcaca gacatggcag      2700
     aggttcctag actcccttct tcgccctctg ccacagtgtt acgcatacct ggacgatatt      2760
     ttgattttct cgaaatctcc agaggagcat gaaaaacacc tatccgaact gttcagtgtc      2820
     ctcgattcgc acggtgttgt gaccaacaaa gacaaatgtg ttttcagaca gtcgtctgtt      2880
     attttcctgg gacatgtcgt gtcagcagat ggcattcgcc ccactgatga aaaggttgaa      2940
     actgtgcaga aacttccccc gcctgcgact tatcatgaac tacgacgctt cttggggatg      3000
     ataaattttt ttcgtcgtca tatcccaaag gctgctgaac tacaaacacc cctcacagat      3060
     gccttgcgcg gccctaacac tacaggggat cgtcccgtcc tttggtcggc ggagatgcaa      3120
     actgcatttg actctttgaa aacggcgtta gcaaaagcaa tcaccttggc tcatccctcc      3180
     cccgatgcca ccctttccat taccactgac gccagtgagg tgtcgattgg ggcggtgcta      3240
     caacagcatt gtggggagga gtcacagcca ttgaagtttt tttctaaaaa gttgtcaccc      3300
     agccaatcca agtggtctgc tttcgaccgc gaacttcttg ctgtatacga ggcggtcagg      3360
     tatttccgag aagatattga gggtcggcca ctaactatat acacagacca taaacctctg      3420
     gcacacgccc tcaaaaatcc tccagctgac ccacctccac gtcgctacag gcattttgat      3480
     ctgatctctc agtacacgag cgacgtacag tacgtccgcg gctctgacaa tttggtcgct      3540
     gattatttct cgcggctcgc tggtatctct tctgtcatcg acttccacga gctcgccaag      3600
     gctcagtcga gcgatgattc aatttcgacc ttgctcaaat ccggcgagca ttcattagtt      3660
     ttggagcgca aaaatatacc cggcgcgcct actgcattgt ggtgtgacac atcttcgggc      3720
     gtgccacgcc cactagtccc cacaaatttc cgccgcgtga tcttcgacgc gcttcatggt      3780
     ctcgcccatc cgggtgcacg agccaccact cgcttaatca cggaacgctt tgtttggcct      3840
     ctgtgaaaaa agactgtcgc gagtggtgcc gctcttgcat cccgtgccaa cgcgccaagg      3900
     ttggccgaca ttgccgcccg ccccttggct ccttcagcat ccactctgac cgtttcactc      3960
     acgtacacct tgacctggtg ggccctcttc ccagcgttga aggcttccga tacttgctca      4020
     catgcattga ccgggcatca cgctgggtgg aggccacacc cttgccggat atttctgccg      4080
     ctacggttgc ttccgcattt gtatcttctt ggattgcccg cttcggctgc cctaccacga      4140
     tcactaccga tcagggtcgg cagttcgagg cggtgctttt cgataagttg tgcgatctct      4200
     gtggcacatc acggatacat accaccgcct accacccaca atccaacggg ttggtagagc      4260
     ggtggcatcg taccctgaaa gctgcactca tgtgccattc agaatcgtgg actaccgccc      4320
     ttccttgggt actcctgggt ctccgaacct ccttcaaaga ggacttagga tgctccaccg      4380
     ctgagctctt gtacggtgaa tgccttaagt tgccagcaga attcgtctct gaggacatgg      4440
     cccccaccat tagctcatac ccagaattca ttgagcaaat caggactaca gtgcgagcac      4500
     tctgcacctc tcaaaccttc cttcatgccc gcccggtgtc tttgtgcata gggatttaga      4560
     aacgtgtgct gcagtgatgc tacggcagga ttcggttcgc cctccactac aaccgccgta      4620
     ccgtggtccc ttcacggtcg tacgccgagg tccatcgcac ttcgacatca tcgttgacgg      4680
     gaagacgacg acagtgtcta agagccgcct gaagcctgct tggaccgtct cctctcagct      4740
     cccagacgcc gcagtcgaca ctgcaccaat gcctgatgtt accttcgact ccggtccccc      4800
     ccttgcacgc cacggacgac acgcccctgc aggagggcga ccccctgccg agtccggggg      4860
     ccgagtcacc ttcctccccc ttaactcatt tttccccagc acaccttccc cctcacttct      4920
     tctcagtgga cgtttctgcc tacccccctt ccaacatctc tgtcgttttg aatgataatc      4980
     aaatcttcgt tatgtacatc tctcctgact cttccaacga acctcatgag caaaaccttt      5040
     ccctcctctt ttccgaagcc ttccctcgac ctctgatcca tcgaacgtcg agtgtttcat      5100
     tgatgctacc ggcacccttt tcatcctctt ctctcctact ccacctgcca cacactcacc      5160
     taccacttac actcgccgca gagtcattgc gcctgctggc atagagacta tgttttccct      5220
     ctcccccgtg atcggccttc ggcccggcac tcgtgatcca gtctcagatg tgctccgcac      5280
     tgcggggggg gggggggg                                                    5298
//
ID   Gypsy-6_LMi-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_LMi-I;
KW   Gypsy-6_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-199
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3370-3370 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 199 BP; 48 A; 35 C; 50 G; 66 T; 0 other;
     tgtggcgacg tcgagatcga ctctacctgg agtggaatat ctttgagccg aggtttaggt        60
     agcccacgcg ggcctttgag tattgtttgg actcgactat tgtgtacatc gaatgtatca       120
     agtgatctgt aataaatgtg tattattcag ttaatgtggc atgtaccggg tatttattta       180
     tcataccgta tccagtaca                                                    199
//
ID   Gypsy-6_MeUr-I repbase;    DNA;    INV; 3619 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-3619
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3041-3041 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..3616
FT                 /product="Gypsy-6_MeUr-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MSTKESPILSKSYILQCLKPDRFDAEPDVPSADTKWI
FT                 HWRYTFTNFLAEQITDQPSDSMKLKILVNHLSPKIYSLIRDCSSYEIAIKL
FT                 LDSIYIKPKNEIYSRHVLATRKQKQEESIAEYLLSLKQLAYDCNFENVTAE
FT                 NYRSEFIRDAFISGILNQKIRQRLLENVTLTLDEAQNQAITLEAAEKNSAA
FT                 FVTNNTQTHIYAVTETNKDQTTNRIENVAMAAWNNTRKRCFFCGNKTLHQR
FT                 TKCPAFNAICQLCSKKGHYANVCKSNMLTVNSVETDFKDAESNCISAASPS
FT                 TLNKAIISVTINNNYADALIDTGSSVSFINKKFAQEINIKIKPYRQTISLA
FT                 SLSHTSFVDGICYTTLSIDKHVYYRQQLLVVNNLCADIIIGHDLLQDHKTL
FT                 EFNFGGSRDTLKICVIEALVPPAFLFTNLSPNIKPICIKSRRYTAEEEEFI
FT                 RQEITSLQKDGVIEPSTSPWRAQVLVTKSTTHRKRLVIDYSQTINRFTELD
FT                 AYPLPNIETMVNNVAKYNYFSQIDLKSAYHQVPIMKSERKYTAFEACGALY
FT                 QFTRIPFGVTNGVAAFQRTLQFIIQTENLKGTFSYLDDITICGVNKEEHDK
FT                 NLKNFMNAAQKYKLTLNKEKCTFGSNFISLLGYTIQNNVIKPDKDRLKPLL
FT                 DLPTPKDAASLKRALGMLAHYSKWIRNFSHHIKLLNNTQFPLNKDAIHSFE
FT                 TLKSDIAKASLTAIDINEIFTVETDASEHSIAATLTQNERPVAFFSRTLST
FT                 AERGHSSIEKEACAIVEALRKWRHYLLGRHFILITDQQSVAFMFNQKHSSK
FT                 IKNEKILRWRLELSCYKFDIIYRPGRENTVADALSRVCATMNPNKLYDLHD
FT                 QLCHPGVTRMIHWIRSKNLPYSIEEVKSMTASCRTCAELKPRFFKSNSQLI
FT                 KAIAPFERINIDFKGPIPSKSRNRYILTIIDEYSRFPFAYPCSDISAATVI
FT                 RCLKDLFHTFGFPLYVHSDRGSSFLSEDLKKFLTSHGIAASRTTPYNPQGN
FT                 GQVERLNGTLWKAVQLSLRSKDMDISDWEQVLQIALHSIRSLLCTSTNATP
FT                 HERLFRHPRRSPNGKSLPTWLMNPGPVMIKKNIRTCKYDPIVEEAEVLQAN
FT                 PSYSHVRLSDGRECTVSNRQLAPYPVVIQTNEDTDDEDYHSSVEDQPEISI
FT                 HNENITAQENNSTLRKSTRDRRPPTYLKEYVAASRTG"
XX
SQ   Sequence 3619 BP; 1290 A; 661 C; 585 G; 1083 T; 0 other;
     atttattcaa cttaaaaaga ttaacgtgat gtcgacgaaa gaatcaccta tattatcaaa        60
     gtcctatata cttcaatgtt taaaaccgga tcggtttgat gctgagccag atgtaccttc       120
     tgcagatacg aaatggattc actggcggta tacgtttaca aattttttag ctgaacaaat       180
     tactgatcaa ccttctgatt caatgaaatt gaagatttta gttaaccatt tatcaccaaa       240
     aatatattcc ttaatacgtg actgctcgag ttatgaaatt gctataaagt tgcttgatag       300
     tatatacatc aaacctaaaa acgaaatcta ttcacgacat gtccttgcta ctaggaagca       360
     aaaacaggag gaatcaattg ctgaatatct tctgagcctg aaacaattag cttacgattg       420
     taattttgaa aatgtaacag ctgaaaatta tcgtagtgag tttattcgtg atgcttttat       480
     ttccggaatt ttaaatcaaa agatccgtca aaggctttta gagaacgtaa ctctaacttt       540
     agacgaagca caaaatcaag caataactct cgaagcagct gaaaaaaatt ctgcagcatt       600
     tgttacaaat aatactcaaa cgcatatata tgcagtgact gaaactaaca aggatcaaac       660
     gactaataga attgaaaacg tagctatggc tgcatggaac aatacgcgta agagatgttt       720
     tttttgtgga aacaaaacct tacatcaacg tacaaagtgt ccagctttta atgcaatctg       780
     tcaattatgt tcaaaaaaag gacattatgc taatgtctgc aaaagtaata tgcttacagt       840
     aaattcagtc gaaactgatt ttaaagatgc agaatctaac tgcatatcag ctgcatctcc       900
     atctacttta aataaagcga taatctctgt tacgattaat aataattacg ctgatgcatt       960
     aattgacact ggaagttctg ttagtttcat taataaaaaa tttgcacaag aaataaatat      1020
     caaaatcaaa ccttacagac aaactatttc cttggcttcc cttagtcata catctttcgt      1080
     cgatggtatt tgttatacaa cattgagtat cgataaacat gtttattatc gtcagcaact      1140
     tttagttgta aataatttat gtgctgatat aataataggt catgacctat tacaagacca      1200
     caaaacactc gaattcaact ttggtggttc aagagacaca ttgaaaattt gtgttataga      1260
     agctttagtg ccaccagcat ttttatttac taatcttagt cctaacataa agccaatttg      1320
     tataaaatca agacggtaca cagctgaaga agaagaattt attagacaag aaataacttc      1380
     tttacaaaag gatggcgtaa ttgaaccaag cacttctcct tggcgagcac aagtacttgt      1440
     tacaaaaagt acgacccacc gaaaacgtct cgtgattgat tattcacaaa caataaatag      1500
     atttacagaa ctcgatgctt acccattgcc taatattgaa actatggtca acaatgttgc      1560
     taaatacaat tattttagtc aaatagactt aaaaagcgca tatcaccaag taccaattat      1620
     gaaatcggaa cgtaaatata cagcttttga agcatgtggt gctctttacc aattcactcg      1680
     tataccattt ggtgtaacta acggagttgc tgcttttcag cgaacattac agtttataat      1740
     acagacagaa aaccttaaag gcacttttag ttacctagac gacattacta tatgtggagt      1800
     aaacaaggaa gagcacgata aaaatttaaa gaatttcatg aacgctgcac aaaaatataa      1860
     acttacattg aacaaagaaa aatgtacatt tggttctaac tttataagtc ttttgggtta      1920
     tacaatacaa aataatgtta ttaaacctga caaggaccgc ttaaaacctc ttttggacct      1980
     tcctacaccg aaagatgcag cttcacttaa acgtgcatta ggtatgttag ctcattattc      2040
     aaaatggatt cgcaattttt cacatcatat caaattatta aataatactc aattccctct      2100
     taataaggat gcgatacata gttttgaaac tttaaagtca gatattgcaa aagcttctct      2160
     tacagctatt gacataaatg aaatatttac tgtggaaaca gatgcatcag aacattcaat      2220
     agctgcaact cttactcaaa atgaacgccc tgttgcattt ttttcaagaa cactatctac      2280
     tgcagagcgt ggtcattcat caattgaaaa agaagcctgc gctattgtgg aagcacttcg      2340
     taaatggaga cattatcttc ttggcagaca tttcatttta ataacagatc aacaatctgt      2400
     agcttttatg tttaatcaaa aacattcaag taaaataaag aatgaaaaaa ttttacgatg      2460
     gcgcttagaa ttgtcttgtt ataagtttga cataatttac cgtccaggac gtgaaaatac      2520
     cgtagcagat gctttatcaa gagtttgtgc aactatgaat ccgaataaac tttacgattt      2580
     gcacgatcaa ctttgtcatc cgggtgttac aagaatgatt cattggatac gatcaaagaa      2640
     tcttccttat tccatagaag aagtaaaatc gatgacagcg tcatgtagaa cttgcgctga      2700
     acttaaaccg agatttttca agtcaaatag tcaactcatt aaagctattg caccttttga      2760
     gagaatcaat atagatttta aaggcccaat tccatcaaaa tcacgtaatc gatacatatt      2820
     gacaattata gacgaatatt ccagatttcc atttgcgtat ccctgtagtg atatatctgc      2880
     agctacagta ataagatgct taaaggatct cttccatact ttcggatttc cactttatgt      2940
     acattcagat agaggatctt catttttatc tgaagactta aaaaaatttc ttacatccca      3000
     tggaattgct gcaagtagaa cgacgcctta taacccccaa ggaaacggtc aagtcgaacg      3060
     tctcaacgga acgttatgga aagcagtaca gctaagcctt cgttcaaaag atatggatat      3120
     atctgactgg gaacaagtac tacaaattgc gttacattct attcgctcac ttttgtgtac      3180
     aagtacaaat gctacaccac atgaacgatt atttcgacat ccacgtcgtt cacctaatgg      3240
     taaatctttg cctacatggc tcatgaatcc aggaccagtg atgataaaaa aaaacattag      3300
     aacttgcaaa tacgatccta ttgtggaaga agcagaagtt ctacaagcaa atccttcgta      3360
     ctcgcatgtt cgtttatcag atggacgaga gtgtacagtt tcaaatagac aattggcacc      3420
     ttatcctgta gttatacaaa cgaatgaaga taccgatgat gaagattatc attcttcggt      3480
     cgaagatcag cccgaaatat caatacacaa tgaaaacatt acggcacaag aaaataatag      3540
     tactcttcgc aagtctactc gcgaccgacg gccaccaaca tatttgaaag aatatgttgc      3600
     agcttcaagg acgggtgat                                                   3619
//
ID   Gypsy-6_MeUr-LTR repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   22-NOV-2019 (Rel. 26.06, Created)
DT   22-NOV-2019 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-159
RA   Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3059-3059 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 159 BP; 50 A; 23 C; 12 G; 74 T; 0 other;
     tgtactatat ttacttcttt ctattagacc tttttacatc aaactacttt tttaaaaaat        60
     aatatgttta ataatgtcac tattttgttt gtcattcgct ctacaaattt taagttgaat       120
     aaaaccaata ttccattggt tttgtctttt attataaca                              159
//
ID   Gypsy-6_MoPha-I repbase;    DNA;    INV; 4896 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4896
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1158-1158 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..4876
FT                 /product="Gypsy-6_MoPha-I_1p"
FT                 /note="gag, reverse transcriptase, ribonuclease H,
FT                 and integrase."
FT                 /translation="MASRKDPSEDANDTSRWNDLESTIRPQDQDGGVAYRK
FT                 TREDREDGGEARIFPEVVKDSRRSRRGSIDERQSVITVDEVGDNDEGAPGG
FT                 SSTDAPTQSVLEDVIRAMKREDGGNTDAMLVKLLARALLNEQPRKEVPLYH
FT                 VIPDLSKNIENFTGDGKGVRPKDWITNIESMRKIHKWPENYALETARMHLR
FT                 GGARDWYRARASTLVDWETFKLAFEATFVVPDSTSDRWQKMIDRVQLKDES
FT                 LSAYFHAKTKLCIDLRLDFRDIKEQVLDGLWSRELCISVMARNHYSLDDLL
FT                 HDIVANERVLSQRAARIRSGKPKPQGTPLTKTVNTDKESKPGSSSNNTKAS
FT                 NPDKRPPVKNDEGQPKCYNCKAFGHIARDCPEEPRELICRQCKKKGHTQRH
FT                 CPEAKSPNKAEVNTIDEVNSSTIEKYVKLVKINGRQVRALIDPGSSDCTVK
FT                 ATRVLIERFEVIPVQSELKGFGPAHYVVTSPGLVKAELNVDDVVVPDVLVR
FT                 VVPDDTQSYDMIIGRSFTEQPYVEYRKSGDELTFTIREDSFLSIIEPSETE
FT                 RRVKCVTVTNDVIIPPSSIQLVNAITDTERHELMVLNTGVSQGTVTKGQRL
FT                 ERGDVTRMPVIPRMEKKEPITRQDLIIGEDQPEEVIEELVRIMNEYRDCVA
FT                 INLSELGQATNSVMDIEEIPGSKPVMSKPYRASNSEREEIKRIIQEWRDAG
FT                 IVRNTDSPYASPVLLVRKKNGEARLVVDFRKLNRQTVRVPFPMPNPDDHLE
FT                 QVRDCALFITLDLAHGYLQIPLTEQAMPKTAIITPDETVEFTRMIFGLLNG
FT                 PAYFTKAMKKALGPLRERVVLFYLDDIFIPGRDWIDLRERLVLTLQALREA
FT                 GLTIKLSKCRFLQRRVSYLGFEISSEGIEPGESKVKAIIDYPTPTNAHETR
FT                 RFIGMASFFRRFIPRFAQLAAPLHELLKGEAKFEWGEKEQHAFEKLKGSLS
FT                 NKPVLQPFNPERVTELHTDASALGLAAMMFQRDEHKRLRLVYAISRRTSEP
FT                 ERNYHSSKLELLAIVWAITRLRPMLINIPFTIVTDCQALLYLSTQKTVNPQ
FT                 VVRWNNTLSEFDFNITHRPGTKLVHVDALSRAPVSKSEQMDECGMFTLVNE
FT                 HDEIAMNQHSDEAIKRKSAILRKTASDRSKHEVSEIEDYELVNGIVYKRRG
FT                 DRLLFAVPRTMRKSLAIRFHDLKGHPGLDRTLAMLTEHYYYPGVRRYIRQH
FT                 IGACLQCALTKIKTGRQSGLLHPIPPGERPFAVIHVDHTGPFVTTKKGNKY
FT                 IFAIIDNLTKYVILHATRDTKVSGVIRALEKFVLDHGAPRKIISDRGTCFT
FT                 SNRXANFCKEHGIHHTLNSPRHPQANGQIERINFTLIPVLQASLRDDEGRD
FT                 WDTKLPKVQQQLNDAPSATTGRAPFELLYGYQARRNEGEIRKITDESATYT
FT                 KPGELQQAAREKIDSEQQRVKERYDRNRAKNVRYNVGDIVHMRVAPTPTGE
FT                 STKLQCKYRGPLLITEKLHEDTYRVADLRQEEPGRRYASTAHASQLKIWRP
FT                 HIEDNNTSEDESDEEYEPPDSTEDNESAQEENRDPEHTDSRESNTTQAGGK
FT                 TEEEDAEEGVNGKSQPRRSRRDRRIPTHLKDYKTQLPEDE"
XX
SQ   Sequence 4896 BP; 1557 A; 1019 C; 1313 G; 1006 T; 1 other;
     ttcagaagtg ggataggtct gaaaaagata cggtgattgt gatcggtact gtgcgatggc        60
     gtcgagaaag gatccaagtg aagacgcgaa cgatacttcc cgatggaacg atctagaaag       120
     cacgattcgg ccacaggatc aagatggcgg cgtagcatac cggaagacgc gggaagacag       180
     agaagatggc ggagaggcga gaatattccc ggaagtggta aaagattcac ggcggtcgcg       240
     aagaggatcg atcgatgagc gacagagtgt gattaccgtc gatgaagtcg gcgacaacga       300
     cgagggtgcg ccgggcggat cgtccacgga cgcgccgacg caatcggtac tagaagatgt       360
     aatccgagcc atgaaacgcg aagacggcgg gaacaccgac gccatgttgg tcaagttgct       420
     cgcacgcgcg ctcttgaacg aacaaccacg taaggaagta ccactgtatc atgtgatacc       480
     agacttaagt aagaacatcg aaaactttac gggtgacggt aaaggagtgc gacctaagga       540
     ttggataact aatatcgaga gtatgcgcaa aattcataag tggccagaga attacgcgtt       600
     agaaacggca cgcatgcact tacgaggagg tgcacgagat tggtatcgcg cacgcgcttc       660
     gactttggtg gactgggaga ctttcaagtt ggcatttgag gctacgtttg tggtgccaga       720
     tagtacttcc gatcgatggc agaaaatgat cgatcgagtg cagttgaagg acgaatcatt       780
     gagtgcatat tttcatgcga agacaaagct ttgtatagat ctgcgactag actttcgcga       840
     cattaaggag caagtgctcg atgggttgtg gtcaagagaa ttgtgtatct ccgtgatggc       900
     gaggaatcat tattcgctag acgacttgct acatgatatt gtggctaatg aacgtgtgtt       960
     atcccagcgt gcagctagaa tacgctctgg taagccgaag ccacaaggaa ctccattaac      1020
     aaagacggtg aataccgata aggagagcaa gccgggatcg tcatcaaaca acaccaaagc      1080
     gtccaatccg gacaagcgac cccccgtaaa gaacgacgag ggacaaccga agtgttacaa      1140
     ctgtaaagcg ttcggacaca ttgcacgtga ttgtcccgaa gagccacgcg agttaatctg      1200
     ccgacagtgc aagaagaagg gtcatacaca gcgccattgc cctgaggcta aatcaccgaa      1260
     taaagcagag gtgaacacaa tcgacgaggt gaatagtagc acgatcgaaa aatatgtgaa      1320
     actagtgaag attaatggcc gacaagtacg agcgttgatt gaccctggaa gttccgattg      1380
     tactgtgaaa gcaacgagag tattaatcga gagattcgaa gtgataccgg tgcagtcaga      1440
     gctgaagggt ttcggaccgg cccattacgt agtaacatcg ccgggacttg ttaaagcaga      1500
     attaaacgtt gatgacgttg tagtaccgga cgtgctagtg cgggtagtgc cggacgatac      1560
     gcagagctac gacatgatca tcgggcgctc gttcaccgaa cagccgtatg tggaataccg      1620
     caagagtgga gacgagttaa ccttcacgat acgagaggat tcgtttctat caatcattga      1680
     accaagcgag accgagagaa gagtgaagtg cgttactgta acgaatgacg tgataatacc      1740
     accgtcatca atacaactcg ttaacgccat aaccgacact gaacgtcacg aactgatggt      1800
     gctaaataca ggagtctctc aaggaactgt gaccaaaggg cagcgtctag agcgaggcga      1860
     cgttacacgg atgcccgtaa taccaaggat ggagaagaag gaacccatca cacgtcagga      1920
     cttgatcatc ggagaggacc aaccagagga agtgattgaa gaactcgtgc gtatcatgaa      1980
     cgagtaccgt gactgtgtcg caatcaacct ttcggagttg ggccaggcga cgaatagtgt      2040
     aatggacatt gaagaaatac cgggtagtaa accagtgatg tcaaaaccct atagagctag      2100
     taattccgag cgagaggaaa ttaagcgtat cattcaggaa tggcgtgacg cgggaatagt      2160
     gcggaacaca gactcaccgt atgcgagtcc agtgctgtta gttcgaaaaa agaatggcga      2220
     ggcgcgacta gtagtagact ttcgaaagct taatcggcaa acggttcgcg taccttttcc      2280
     tatgccaaat ccggatgacc atctagaaca agtaagagac tgcgcattgt ttattacact      2340
     cgatttggca cacggttatt tgcaaattcc gttgaccgaa caggcaatgc cgaagactgc      2400
     gataattact ccggacgaaa cagtagaatt cacgcgaatg atttttggat tattgaacgg      2460
     accagcgtat tttactaaag cgatgaagaa ggcattaggg ccactaagag agagagtagt      2520
     attattctat ttagatgata tatttatacc aggacgcgat tggattgatt tgcgcgagag      2580
     attagtactg acgttacaag cgttacgaga ggcgggatta acgattaagt taagtaaatg      2640
     cagatttctc cagagacgag ttagctacct aggatttgag atatcgagcg agggtattga      2700
     accgggagag tcgaaggtga aggcaatcat tgattatccg accccgacga atgctcacga      2760
     gacgcgacga tttataggta tggctagctt ctttaggcga tttattccaa gatttgcaca      2820
     attggccgcg ccgttacatg agttactaaa aggcgaagct aagttcgagt ggggcgaaaa      2880
     agagcaacac gcgtttgaaa aactgaaagg atcactgtcg aataaaccgg tattgcagcc      2940
     attcaatccc gaacgagtaa ctgagttaca taccgatgct agtgctctgg gactagcggc      3000
     gatgatgttt caacgcgacg aacataagcg tttacgttta gtctacgcga ttagtcgacg      3060
     aacgagcgaa cccgagagga attatcattc tagtaagtta gaacttttgg cgatcgtttg      3120
     ggcgattacg cgattgcgac cgatgctaat aaacattccg tttaccatag tcacagattg      3180
     tcaagcgctg ttatatttaa gtactcagaa aactgtaaac ccgcaagtag ttcgttggaa      3240
     taacacgttg agcgagtttg attttaacat tacgcataga ccgggaacga aactggtaca      3300
     tgtagatgcg ttaagccgag cgccagtaag caagagcgaa cagatggacg agtgtggtat      3360
     gtttacgtta gtgaatgaac acgacgagat tgcgatgaat cagcatagcg atgaagcgat      3420
     aaaacggaaa agtgctatac ttagaaaaac cgcgagcgat agaagtaagc atgaagtaag      3480
     cgagatagag gattatgagc tagtgaacgg aatagtatac aaacgacgag gggaccgatt      3540
     actctttgca gtaccacgta cgatgaggaa gagcctagct atacgcttcc atgatttaaa      3600
     aggccacccc ggactggatc ggacactagc aatgctaacg gaacattatt attatccagg      3660
     agtgagaagg tacatacgtc aacacattgg agcttgtcta cagtgtgcgc tgacgaagat      3720
     caagaccggc agacaaagcg gattgttgca ccctatccca ccgggcgaac gaccatttgc      3780
     tgtaattcat gtggaccaca cgggaccgtt tgtgacaaca aaaaagggca acaagtacat      3840
     attcgcaata atcgataact tgaccaaata tgtaattcta catgcaacca gagacacgaa      3900
     agtgagtgga gtgatacgag cattggaaaa attcgttttg gaccatgggg ctccgcgtaa      3960
     aataatctcg gatcgcggga catgtttcac gtccaaccgg ttwgctaact tctgcaaaga      4020
     acatggaatc catcatactc tgaattcgcc acgccatccc caggccaacg gccaaataga      4080
     aaggataaac tttaccttga taccagtgct acaagcgagc ttacgagacg acgaaggacg      4140
     agattgggat accaaattac caaaggttca acagcaactt aatgacgcac ctagtgcaac      4200
     gactgggcga gcacctttcg agctacttta tggttaccag gctcgacgga acgaagggga      4260
     aatacggaag ataacggacg agagtgcgac gtacacgaaa ccaggggaac tgcaacaggc      4320
     agcccgagag aaaatcgaca gcgagcaaca acgagtgaag gagcgctatg atcggaatcg      4380
     cgcgaagaac gttcgataca acgttgggga tatagtacat atgagggttg cacccacccc      4440
     gaccggcgag agcacgaaat tacagtgtaa ataccgaggc ccactgttaa ttacagagaa      4500
     actacacgag gacacctaca gagtagctga tctgcgacaa gaagagccag gacgtcgata      4560
     tgcctccacg gcacatgcta gtcaattaaa aatttggcga ccacacatag aagacaataa      4620
     tacatctgaa gatgaaagcg acgaggaata cgagccgccg gattcaaccg aagataacga      4680
     atctgcacaa gaggaaaaca gggatccaga acataccgat agcagggaga gtaatacgac      4740
     acaggcaggt ggtaaaacag aagaggaaga cgccgaagag ggagtgaatg gaaagtcaca      4800
     gccacgacgt tcgagaagag atagacgaat tcctacacac ttaaaggact acaagacaca      4860
     attacccgag gacgagtaat tactaggatg gccgag                                4896
//
ID   Gypsy-6_MoPha-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-435
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1170-1170 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 435 BP; 128 A; 76 C; 136 G; 95 T; 0 other;
     tgataacgat agcgagtgag cgtagcgaga gagtagggag gagcgacgag agatggcgtt        60
     agtaagagcg agagtggcgg catgaggctg cgcgatgtga ggacagtagt gtgtgagcga       120
     gaaagtaaga gagagcagtg agagatttgg cgcggagagt ttcggatgta cgaccgagcg       180
     atttagagag agtgtgagag attcgagtct tggaactgcg tgtcgcgagg agagtgatta       240
     cgagttactc gattggttat tgtaccgagc tagacaatat atttatttgt gcaattgaac       300
     acaccgtaaa ctcagtagac tatccctacg agccaatccc gacatcccga catccttgaa       360
     gcgagaatac ccagagttac gagtgagcga gcaaacttag cagacgtaga gtctctatat       420
     acctcttagt taaca                                                        435
//
ID   Gypsy-6_MSe-I repbase;    DNA;    INV; 5068 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5068
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 884-884 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5068 BP; 1501 A; 998 C; 1116 G; 1453 T; 0 other;
     tcagaagtgg gatcgaacgg aatgcaaaat gaagaaaaat tgtcggatac gtcacacgct        60
     gaaaaactat tgagtaacat ggaaaggttg ctttctcggg ttttggctat tccacaaacg       120
     ccaaccgtga gtactaatcg ttcaccactt ttaaagtttg atccggatga ttctgagtca       180
     gatattgatg actggtgtaa agtaacggag atcattgtga caaataaagg cttggaaggg       240
     gttgacctat taatagcctt aacaggagcg ctaaaaggtc gtgctggtgc atgcatagct       300
     aagctaaatt tggaagaaat cacttggagt tcagtcaaag agattttaat agccagattt       360
     tcaaaaccca aacttatcca agactatttc gacgatgtgt tgcgatttaa aataagcgct       420
     aatgagacag cgtccgaatc agctctacgt ttatggaatc ttatcgaaaa gatacctaat       480
     actaagatgt ctgaagaagt aataactgga tttgtaattt cggtactgtg tcaaaaagat       540
     aacatgatac gtcgtgaact aaatgcacag acaatcacga gccgtgccct attattccgc       600
     atccttggtg gaatatcact gaagagacgc ttggatgccg aagctcaaga acctgaagcc       660
     aagcgagttc gattggttga gaagttctct ggcaagtgtc attactgcgg attgaatgga       720
     catcgtatag cagagtgtcg aaaacgacgc aatgataggg aaacgaaaac tcaagagcct       780
     tcaagttcat cacgtttagt ggaaaagaag ccagctgtta cttgctacgc ctgtggacag       840
     cctggccatg tggcgacggc ctgtctgaat aagaagaata gtagtgcagc cacagtcaag       900
     gaagtccaac aatgcgagca caggccctcc agaggtaccc taaggacgtc atcgggtgag       960
     accgtctcct ttctatttga tagtggttca tcttgttctt tgttaaaaga atgtttcgtt      1020
     gaaaggcttc tgggtactga gcttaaaagt cttgtttatc ttagtggcat aggcggtgat      1080
     gatatccaat gcaccaccca ggtccaaagc tgtgtgacaa tcgatgaaat tacagttagc      1140
     ttactttttc atgtggtccc tgatactcat atttccgatc caattataat tggaagggat      1200
     atttttgacc aagggttgtg cgttaggatt gaccatgata atcttatttt cttttcaata      1260
     aaaaaaagta actattgtga cctaaagtcg aataagttgg acgttatgaa aattgacacg      1320
     gatttacaag gaaatgataa aaaatcgctt atgttgttac taaacaaata ttccgactat      1380
     ttcgctgtcg gtattccctc tcgccgggtt tcaacagggg aatgtgagat taatctaata      1440
     gacccaacta aaattgtaca gcggtgtcca tatagattag cccccgctga aaagttgata      1500
     gttagagaaa agatccaaga attactcgat gctagggtga ttcgcgaaag tacctccccc      1560
     tttgctagcc caatattatt agttgcgaaa aaggataact catataggat gtgtgttgac      1620
     tatcgagagt tgaactccaa tacacagcct gagcactatc ctttgccgcg tattgaggaa      1680
     caaatcgatc agcttgccgg ggccagcatt ttctcgtcgt tagacatggc atcaggattt      1740
     catcagatag tggtgcaccc tgattcagtg gagaaaacag catttgtcac gcccgaaggg      1800
     caatatgagt accttgcaat gccttttggt ttacgaaatg ctccgtctgt atatcagagg      1860
     tgcatcactc gagccctgag tcatcttaaa gataaacctt tgatatatat ggatgacgtt      1920
     ttgtgctatt ctgctgacat agttgaaggt ttgcagcgct tagataaggt attaggcgcg      1980
     ttaactaaag cggggttcac attcaatctc caaaaatgta agtttatgaa acgtaaaata      2040
     gactatttgg gatattcact tcagtccggt gaaataagac cgaattctcg taaaatactg      2100
     gcgttagcag attctcctca accaaaaacg gctactcatg tcagacagtt tctcggtctt      2160
     gcttcatatt ttagaaaatt tatccccggt tttacccgta ttgtgggacc gttgtatccc      2220
     ttaacgaaac taaaaggacc aattgcttgg actcagaagt atgagcaaat acgtactgct      2280
     ataatacgta ttctaacatc cgaaccggta ttaactattt ttgatcccga gctaccagta      2340
     gaattgcaca cggatgcgag ttctgaaggt tacggggcga tccttattca aaagaaaaat      2400
     aatcttcctc atgtcgtgga gtattatagc cgacgtacgt cagaagcgga atcacgttac      2460
     cattcgtacg aactggagac gttagcggtt gtgcgagcgg tagaacactt ccggcattat      2520
     ctttacggta aacatttctt agttttttac ggattgtaac tcacttaagg cttcaaagtc      2580
     aaaaaaagat cttacgcccc gcgttcatag gtggtgggct gttttgcagg cgtatgattt      2640
     tgaaattata tatcgtgagg ggcggtgtat ggaacacgcc gattaccttt cgcgaaatcc      2700
     tctacctaat aatgttgaca tagtaagcga gaactcattg acaaagaaag ttcaatatgt      2760
     tgagcttcat caagattggc tttccgtcga acaaaaacgt gatagtgaga tacaagatct      2820
     tatcacgaaa cataatgatc atagttttcc cgattcaata gctcagtcat atgatgttag      2880
     agaaggtatt ctttatagaa aaatctgtcg aaataaagta gtttcttggt tgccagtagt      2940
     gccgcggtcc ttaatttgga cattaattaa tcatacccat aatgaaatcc agcatctagg      3000
     caaagacaaa acattagata aactgtatga acaatactgg tttccacaga tgtcgaaatg      3060
     cgtgcgtaaa tttgtagatt cgtgtattat ttgcaaagcg tcgaagggtc catcgggagc      3120
     tcaacccatt caacttcact caattcctaa agtaccagtg ccgtggcata ccatccatat      3180
     agattttacg ggaaagctca gcgggaagag cgaccgaaag gaatactgct cagtgattat      3240
     cgatggtttc accaaatatg ttctattaga acatacttct tctcttgacg ccaaaagcgc      3300
     gatacacgct cttcgcaaag cagtttgtct ttttggggca cctaagcgaa taattgctga      3360
     ccaaggtcgt tgctatatca gctctgattt taagagtttt tgcgctcagc ataagattca      3420
     acttcacttt atcgcgacgg gttccagtag agcaaatggg caggtagaaa gggttatgcg      3480
     cactcttaaa agtttgttaa ctattgttga gaacgacccc aataagacgt ggcgtgatga      3540
     actaggaaat atccaactcg cactcaacag tactaaatct accgtgacta aatattcacc      3600
     tactgaactt atgttaggga ttcgcgctca gtcattgggc atgtcaaaac taaactctga      3660
     agcccatggt cagcaagaac gtttagatct cttgacacta ttcgggacgc agcgtctacg      3720
     aatattcaaa aagcagcaag gtctgaggca cgccgtttta atagaggtcg agcaataata      3780
     aaacagttct acaagggtga tttcgtattt cttaaaaata gcgaacgaaa ccaaactaaa      3840
     ttggatagaa aatttagagg tccatttatt gtaactgcgg tactagacaa cgaccggtat      3900
     gaattaaaaa gcttaggcgg ttctcatcga gtatataagt atgcccacga gaatttacgc      3960
     tcagtgcctc agggtcacga tggtttactt gaaattacaa caaatctttt gaactgtgac      4020
     gaggccgaga cggcgacaga cgatgaagcg tcagttgatc tagtaaacgt aactacacca      4080
     gatcagggtg atactttaat tccaaataac tatgacacct tgaccgtgtg ctcggataca      4140
     atgtccgccg attcccgtac tctcacagct ggttcagaca ctcttagtgt acattcggat      4200
     gaggtcatat gggatgaaga agtggtgtct taggtgtgtt atcattaatt cactttgtag      4260
     tcgatcctgg ctgagatagt gacatccatt tcttcgaaag gattcactat tctcatccag      4320
     atgtagagtt tatcctggtt aagatagtga catccatttc ttcgaaagga ttcactattc      4380
     tcatccagat gtagagttta tcctggttaa gatagtgaca tccatttctt cgaaaggatt      4440
     cactattctc atccagatgt agagtttatc ctggtcaaga tagtgacatc catttcttcg      4500
     aaatgattca ctattctcat ccagatgtag agtttatcct ggtcaagata gtgacatcct      4560
     tttcttcgaa aggattcact attctcatcc agatgtagag tttatcctgg tcaagatagt      4620
     gacatccatt tcttcgaaag gattcactat tctcatccag atgtagagtt tatcctggtc      4680
     aagatagtga catccatttt tctgaaggga ttcactagtc tcatccagat gtagagttta      4740
     tcctggtcaa gaagtgtcgt ccgggccaca cctggaaagg ttggttgaag ggatgcactc      4800
     acttgctcca gatggtatgt gtgatttcgg ctggtcgaaa ggacagtgtc gtccgggcca      4860
     cacctggaaa ggttggttga agggatgcac tcgtccggtc caagtcgtaa cgtgtctaaa      4920
     tctaaatagc attgcatttg atgtcgataa tcatatttca tttacaaagt tcctagttcc      4980
     tttattggat ggacgagcgg tgattgagaa cttctttggt ttcagaaact tacagacgcc      5040
     cgaggacggt cgtatgtcag tctggccg                                         5068
//
ID   Gypsy-6_MSe-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 875-875 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 206 BP; 49 A; 52 C; 59 G; 46 T; 0 other;
     tgacggcgcg tctcataaaa gacaacgtca agagtgacac cggcagtcac tctagcggag        60
     cgtcgtgtcg acggtagcgg ggccgaccat ctttgcttgt atttttggtg gtacagaacg       120
     gccagcgcac cacggttgcg acgaatcgct acaagcagtg tatcagtgta ataatgaatt       180
     cggatgaagg ccctcctgcg ctttca                                            206
//
ID   Gypsy-6_OrIn-I repbase;    DNA;    INV; 4759 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4759
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1547-1547 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..4153
FT                 /product="Gypsy-6_OrIn-I_1p"
FT                 /note="SAP at the N-terminus, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDLSVRELKEKLKNLGLDSKGRKEVLLDRLRNFEKDQ
FT                 DRSDMRSERSDSPARRPRVSNDFSSRICFRDMEGAIPDFYGTKGMSIEHWL
FT                 TEVSRNQEVFNWTPLETYLVAKKHMKGSAELFIAGEKDIASWEQLKTALLD
FT                 EFKVTLSQAEIHQVLSEKKMKSDEDVYEYFLSMKELASKGELDDKSLIFHV
FT                 INGIQDSNDRKQILYGCESIKEFKVKMKTYIQIKKAYSTPKLVEKANSSPK
FT                 SVGKPTNDSGKVENSSRCYNCNAIGHLANNCKKPKRQPGSCYACGSTEHQI
FT                 KNCPTKKLPINCLTGSATSQLCLESIFFVPETSGNFSSTKSSMALVDSGSP
FT                 ISLIRLSCVPEFVTLLPPPETGYEGVNGSSIHIIGNFITTICIQNVNVQLR
FT                 FYVVPVKAIPFEVILGRDFVYGLDDIEVTLGRSVGSSGVRVMRKKPFDSQV
FT                 VKGDKFSEGKSYQDPVEGENSLPDIFNIDICGITECSEVKLSDNIDHHVRQ
FT                 RVNSLIRSYVSAPRPVHSPIDFEMKISLVHSQPFYFRPRRLSVAEKSAARE
FT                 IIDDLLRQGIVRPSQSEYSSPVVMVKKKTGDYRLCVDYRELNKITRKDRFP
FT                 IPLIDDHLDLLKGKAYFTALDLKNGYYHVKMNEDSIKYTGFVLPFGHFEFK
FT                 NMPFGLCNAPAVFQRYLSAIFKPLIETNKILVYFDDILIATSTIEEHLDIL
FT                 GRVLDLMATHDLVLRFEKCKFLTEEIEYLGYVVNKEGIRANPGNVSTILNY
FT                 PVPSNVHEVQRFLGLVSYFRRFIEGFASVAAPLHSLLKKDQEFYFGEEELR
FT                 AFDALRHALVKDPVLAIFSPELETQLHCDASAQGFGSVLMQRQKSDNKFHP
FT                 VFFFSKRTSLTESKYHSYELETLAIKYALERFRHYLHGLKFTVVTDCHAIK
FT                 QTLAKHDVNPRIARWLFCFQDYDFSIEHRSADRMQHVDALSRSIMILDDSL
FT                 ECALKAKQSTDLAIVQVRDSLEVAERSDFELRNGLVYRKSADGGLKFYVPH
FT                 DLVPSILKTYHENMAHIGVEKTLDAVSRLYWFPNMTSVVKNYVANCLQCIY
FT                 YSPGSGRREGFLHSIPKGDVPFQTIHIDHYGPLPVTFRKQKYIFVVVDGFT
FT                 KFSRLYPCKSTTSEEVIKHLSDFFRAYSQPKRVISDRGSCFTSDAFKQFLE
FT                 QLGIESVLNATATPRANGQVERINRSITPMLSKLSESSADWELNLKRVEFA
FT                 LNNSRHCSTNFTPAELLFGVTQHGMIDDELGPLLVQDANVDSRRDLGQIRD
FT                 AAAQNIAVSQQKNAVRYDKKRKPVRSYAVGDLVVIANRDVTPGVNKKLIPK
FT                 FKGPYEVKKVLDNDRFVVGDVENCQLGRNPYEGVLSPEHMKPYL"
XX
SQ   Sequence 4759 BP; 1327 A; 801 C; 1061 G; 1570 T; 0 other;
     tcttcagaag tgggataaaa gaactattat tttgaacttt ttttttcgtc gacacgtggt        60
     tgaagttccc gcacggtgag acaaaatgga tttatcggtt cgtgagttga aggagaaact       120
     caaaaatctt ggattagact ctaagggaag aaaagaagtc ttattagatc gtctacgtaa       180
     tttcgagaaa gatcaagacc gaagcgacat gaggtccgag aggtccgact cgcctgcgcg       240
     acgtccacga gtgagtaatg atttctcttc tcgtatttgt tttcgggata tggaaggtgc       300
     cattcctgat ttttatggaa cgaagggaat gtcgattgag cactggctaa ccgaagtcag       360
     tcgaaaccaa gaagttttta attggacgcc tctcgaaacg taccttgttg cgaagaaaca       420
     catgaaggga tcggctgagc tttttatagc tggagaaaag gacattgcga gctgggaaca       480
     gctgaagaca gcactgttgg acgaatttaa ggtcactttg tctcaagcgg aaattcacca       540
     agtacttagt gaaaagaaga tgaaatcaga tgaggacgtc tatgaatatt ttttgtctat       600
     gaaagagctg gcgtcgaagg gtgagctgga cgacaaatcc ctaatttttc atgtcataaa       660
     tgggattcag gactccaacg accggaagca aatcctatat ggatgtgagt cgattaagga       720
     gtttaaggta aagatgaaaa cttatataca aattaagaaa gcatattcca caccgaaatt       780
     agtggaaaag gcgaattcct cgccaaaatc ggtcggaaaa cctacaaatg actctggaaa       840
     ggtggaaaat tcgtctcgtt gctacaattg caacgctatt ggccacttgg cgaataactg       900
     caagaaacca aaaagacagc caggatcctg ttatgcttgt ggatccactg aacaccaaat       960
     aaagaattgt ccgacgaaga aactgccgat aaattgtttg actggaagcg caacatccca      1020
     attatgtttg gagtcgattt ttttcgtccc cgaaacgtct ggtaattttt cttcaaccaa      1080
     atcgtctatg gcgcttgttg attctggaag ccccatctct ttgattcgcc tgagctgcgt      1140
     acccgagttc gtgacgttgc tgccaccacc tgagactggt tatgagggag tcaacggctc      1200
     atcgatacac ataattggta attttataac tactatatgt attcaaaatg taaatgtaca      1260
     gttaaggttc tatgtggttc ctgttaaggc catacccttt gaggtgattt taggccgcga      1320
     ttttgtttat gggttggatg atattgaagt cacgttggga cggtcggtgg gatcgagtgg      1380
     tgttcgagtc atgcgaaaga aaccttttga tagccaagta gttaaggggg ataaattttc      1440
     cgagggcaaa agttatcagg accctgtaga gggtgaaaat tcattacccg atatttttaa      1500
     cattgatata tgcggtatta cagaatgtag tgaggtaaaa ctcagtgata atattgatca      1560
     tcatgttaga caaagggtta attcgttaat tagatcttat gtgtcggctc ctaggcctgt      1620
     tcacagtccg atagactttg agatgaaaat ttcattagtt cattctcaac ctttctactt      1680
     taggccaagg agattgtctg tagcagaaaa gtcagctgct cgggaaatta ttgatgattt      1740
     acttaggcag ggcattgtga gaccaagtca gtctgaatac agcagtcctg tagtaatggt      1800
     gaaaaagaaa actggcgatt atcgcctttg tgtggattat agagaactaa ataagatcac      1860
     tcgaaaggat aggtttccga tacctttgat tgatgatcat cttgatctgt taaaagggaa      1920
     agcttatttc actgcgttgg acttaaagaa tggttattac catgtaaaaa tgaatgaaga      1980
     ttcaattaaa tatacagggt ttgtgcttcc ctttggccat ttcgaattta aaaacatgcc      2040
     gtttggctta tgcaatgcac cggctgtgtt ccaaagatat ttatcggcga tttttaaacc      2100
     acttattgag acgaataaaa ttttagttta ttttgatgac atacttattg cgacgtccac      2160
     tattgaagaa catttagata ttttgggtag agttttagac cttatggcaa ctcatgatct      2220
     ggttcttagg tttgaaaaat gtaagttttt gactgaagaa atagaatatt tgggttatgt      2280
     agtcaacaaa gaaggcatta gggccaatcc aggaaatgtg tccacgatcc ttaactatcc      2340
     tgtaccctcc aatgtacatg aagtacaacg attcttgggt ctcgtttcat attttcgtcg      2400
     tttcattgaa ggttttgcaa gtgttgctgc tcctctacat tccctgttaa aaaaggatca      2460
     ggaattttat tttggggagg aggaattgag agcgtttgat gcgttgcgtc atgcgttggt      2520
     aaaggatcct gttcttgcta ttttctctcc tgaattggag acccagcttc actgcgacgc      2580
     aagtgcgcag gggtttggct cagttctcat gcaaagacag aaatctgaca acaaatttca      2640
     ccctgttttc ttttttagta aaaggacatc tttgaccgag tcaaagtatc atagctatga      2700
     attagaaaca ttggcgatca aatatgcgtt agaacgcttc aggcattatt tacatggatt      2760
     gaaatttaca gttgtgacag attgccatgc tattaaacaa acactagcaa agcatgatgt      2820
     taaccctagg attgctaggt ggttgttttg tttccaagat tatgacttct ctattgagca      2880
     tcgctccgct gataggatgc aacatgtgga tgctcttagt cgttcaatta tgattttgga      2940
     tgactccctt gaatgtgcct tgaaggccaa acagtcaact gacttggcca tagtgcaggt      3000
     gagagattct cttgaggtgg cggaaaggtc tgattttgag ctcagaaatg gcttagtcta      3060
     ccgcaaaagt gctgatggtg gtttaaaatt ttatgttccg catgaccttg tcccctcaat      3120
     tcttaaaacg tatcatgaaa atatggctca tattggcgtt gaaaagaccc ttgatgctgt      3180
     gagtaggttg tattggttcc ctaatatgac atcagttgtt aagaattatg ttgctaattg      3240
     tttgcaatgt atttattact ccccaggatc tggtcgacgt gaaggtttcc ttcattctat      3300
     tcccaagggt gatgtgccat ttcaaactat tcatatagac cattatgggc ctctacctgt      3360
     aacttttcgg aaacagaagt acatttttgt tgtggttgat gggtttacga aattttcgcg      3420
     tttgtatccg tgtaagagta cgaccagtga ggaagtcatt aaacatcttt ctgatttttt      3480
     tcgggcttat agccaaccca agcgagtaat ttctgaccgt gggtcttgtt ttacttcgga      3540
     tgctttcaag cagtttttgg aacagttagg tattgaaagt gttctgaatg cgacagcaac      3600
     tcccagagca aatggccagg tagaacgcat caatcgttca attacgccga tgctgagtaa      3660
     gttgagtgag tcttcagccg attgggaatt aaatttgaaa agagttgaat ttgccttgaa      3720
     taattcccgc cattgctcaa caaatttcac accggcagaa ctattgtttg gagtaactca      3780
     acacggtatg attgatgatg agttaggtcc gctgcttgtt caagatgcca atgttgactc      3840
     acgtcgagat ttaggacaga ttagggatgc tgctgcacag aatattgctg tttctcaaca      3900
     gaaaaatgct gttcgttatg acaaaaagcg taagccagtt agatcgtatg ctgtgggtga      3960
     tctggtagtt attgctaata gggacgttac cccgggtgtt aacaagaaac taatccctaa      4020
     atttaaaggc ccttatgagg taaagaaagt gcttgacaat gataggtttg tggtgggaga      4080
     tgtagagaac tgtcagttgg gtagaaaccc ttatgaaggt gtcctttctc ctgaacacat      4140
     gaagccttat ctgtaatttt tgtttagaat tttattttat aaattttatt ttgtaatttg      4200
     gcgttaacag agatgtaata tggcaatttt atttttattt caatacctat tatgccataa      4260
     tgtaatatgt atgacattaa cggttttaat ctctccatgt tgttggtcac ttttatggca      4320
     actttttatg gttttgtgtt aaatttttat gtcaactttt tatagtttta tgttgattat      4380
     tttatgtctg ctttttatag tttagttttg aattttaatt tttatattct tatgtcactg      4440
     aagccatgtc gaactttacc aatttttact tatgtattta gttttggaat ttctcttgtg      4500
     attaccgagt tgaattttgt tctcctcatt atgtttatgt aaccctttgc tttttaagta      4560
     gatttatttt tttgttagtt cgtgtgtctg gtcaattact gttttatgtt acttatgtcc      4620
     cttcagttct tttggtcatt tatgtttatg tcggccatta ggttttaatt gatgagctgg      4680
     tctattatgt tacttatgtt tcgttatgtt ttatgttgca ccaatcgggg tcgattggag      4740
     tagtcaggaa tggccgaac                                                   4759
//
ID   Gypsy-6_OrIn-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1576-1576 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 187 BP; 46 A; 28 C; 44 G; 69 T; 0 other;
     tgtaacgggg acaacactgt catgtagtgt ggccagactg ggagggaggg agtttacggt        60
     tacactcaga ctctcttttt atgctttgca acggttgtaa tgttcgctcg gtgtttaatt       120
     aaatttgatt gtgaattatg actttttatg tgttttaatg aattaatggt tatcctaaca       180
     ccttaca                                                                 187
//
ID   Gypsy-6_OsLi-I repbase;    DNA;    INV; 5575 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-5575
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2016-2016 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..1466
FT                 /product="Gypsy-6_OsLi-I_1p"
FT                 /note="gag."
FT                 /translation="MAGIAWVYRLKKDQVVSELRRLNLPTLGTWVQLRTSL
FT                 ADYVREHQDEFADKPEDEPGYKEEADQTRDYHEFHAEMAREWLRTHLGNRP
FT                 ATATSTPNRREDTNAEMTAFPAGPSAPPEPAARHHEDRAKTMEIMRKWNCH
FT                 FDGRDPYAFLEQLEELQEAYGLTDHQMRSGFTQLLRGEAQKWYRNTAVKIR
FT                 SWQDLQEQLRRFFVPAGEKRRLDQQIASRKQGPDEPLRTFINEITTLMRRR
FT                 GAYTEVELLDAIYFNMKPAFRLYINRALIKDVSELITRAETVTESMTAEQG
FT                 TSRRSEEQRTTRPEPRPRTPNPTRGSKVATDYNRETHCWRCGQTGHDRFKC
FT                 PNSAVRFCSYCGKVGEMTRTCLCARQGNARGAGKTRPQ"
FT   CDS           1370..5455
FT                 /product="Gypsy-6_OsLi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="ILLLLRESRRNDTNLPMCKAGKRQRGRKDPAPVNQPT
FT                 NTDQRGSETNLPRKKNQEKKEKPNQPGEDRKTVHCQIAENPRPTAVANDRI
FT                 IITVRVGQCYVEALLDTGAAASYISDETAEICKQAGWEIEDHQLSSSLANG
FT                 QEMKIYASYRGQGLFNGMRRKHRFYVMPNLAYPMLIGMDLLRRLGLQVWLG
FT                 EQRVDRKDAQNQPTSLPVPCTIKAPIGLAELTPDDQEQLDQFLRREKRAFE
FT                 GIRGLTPLIEHEIRLEETTPIKQRYRPRNPAMQKLIDEEVEKMLTDGVIQP
FT                 SSSPWSSPIVMVKKKDGKYRFCVDFRKLNQVTRKDAYPLPHVNATLDKLRG
FT                 ARYLSTIDLKNGYWQVPLSPESRPLTAFTAPGRGLMEFVVMPFGLHSAPST
FT                 FQRLLDRVIPPEMAPHAFAYLDDIVIVTSTFEEHLRVLTEVFRRLRAAKLR
FT                 PNWEKCHMARNSLKYLGHIVDNEGLRTDPEKVSAVAELPPPANIKDLRRFL
FT                 GLLSWYRRFVPDVSKEAAPLTTLLRKDVRWTWGEKQQQAFDELKKRLIDSP
FT                 VLAMPDWNKTFILQTDASTEGLGAVLTQEDDQGERVIAYASRTLNNAEKNY
FT                 SATELECLAVKWGIWKMRHYLEGYHFIVVTDHQSLKWLEKIDSPSGRLARW
FT                 ALELGQWDFEIRYRRGPENTVADALSRRPQPVCGIQQPAQGNWYNRKYQEV
FT                 ENNPEDHPEYRIENGILYRNILHTLDFNEIEPDQQWKICVPEDQKTRVLRE
FT                 AHDIPTAGHLGVAKTLARLAHSYYWPGMLREATKYVRDCTRCQEYKVNQQA
FT                 TPGNMYATNVQQPWEMVSADLVGPLPRSKTGNTTLLVIQDRFTKWIELRPL
FT                 RRATGPAVAKALRELVILRHGTPRVVTTDNGKQFVGKEFEKTLTESGIKHR
FT                 RTPPYAPQCNPVERANRVIKTMISQDLGKTQKAWDEHLPEIAFAYNTARHD
FT                 STGYTPAYLNTGRELTPPGSLQQENQRRTTTPWATRLKNLRDAQELARTRL
FT                 AQEFQRQQRHYNQRRRNWQPKIGERVWKRTHILSSKADARNAKLSKKYDGP
FT                 FRVHKRVSPVIFDLRDRQGKRVDHVHVRDLKPVTGTRDTKLRKATTQPSGS
FT                 DGPSRNASAQPSSSSEPTRNLNAQGRDVTGPLPAGHGPAAIKGQQQRQRAQ
FT                 TRDGCKTAGRGDFGSYTPPKPARKSRAQPANANATGVEKVHTPNDATECLV
FT                 RGANPQSDQTGPGPDTGQAAARHRANTGETQAASAGPGRPATGNIDGRPQH
FT                 GQTARGSRWADDHPGARKPAAGNQGTGQDDGGSRGRRSMGQPLPAGSNDAG
FT                 PDADPGHRVHNRPTRDKGGDNVHPGRRDRCPIVHGSEATPPHEKRPTLDH"
XX
SQ   Sequence 5575 BP; 1647 A; 1654 C; 1519 G; 754 T; 1 other;
     tggcgcccga acagttcgat agtagcgacg gtggagccac tagagttaag atctagtata        60
     taaggaacga gcaaaaggac tccagatcag aagctaccga gcaatcgaag cgacaacaca       120
     gaacgagaat ccagagcgaa agcagaacga gaatccagaa cgagccagaa gatcatccga       180
     gggggatata ccacggacgg cctacctctc cgaatttgcc gacaagatcg acgaggcaac       240
     tgcgaacagg caatccagcc agacccagtg tctgctagca gctgtacgaa tcgattccaa       300
     ggaagcgaac cgaggaaacc aggatggccg gtatcgcttg ggtatatcgc ctgaagaagg       360
     accaggtagt cagcgaattg cgtagactaa acctgcctac gctgggaacg tgggtccagc       420
     tacggaccag cctggcagac tacgtccgag aacaccagga cgagtttgca gacaaaccgg       480
     aagacgagcc gggatacaag gaggaagccg accagacccg agactaccac gaattccacg       540
     cggagatggc ccgagaatgg ctccggacac acctggggaa ccgtccagcc acggcsacat       600
     caacacccaa ccgtagagaa gatacaaacg ccgagatgac ggcatttccg gcaggtccat       660
     ccgctccacc agaaccagcc gcccgacatc acgaggaccg ggcaaaaaca atggagatta       720
     tgcgaaaatg gaactgccat ttcgacggac gagacccgta cgcgttcctg gagcaattag       780
     aagaactaca ggaagcatac ggcctaaccg accaccagat gcgctcgggc ttcactcagc       840
     tattacgagg cgaagcccaa aaatggtaca gaaatacagc cgtcaaaata cgctcgtggc       900
     aggacctcca ggaacagcta cgaagattct tcgtaccagc cggagagaaa aggcgattgg       960
     atcagcaaat cgccagccgg aagcaaggtc cagacgagcc gctaaggacc ttcattaacg      1020
     agataactac gttaatgcgc cgcagaggag catacaccga ggtagagctg ctggacgcaa      1080
     tctacttcaa tatgaagcca gcgttccggc tctacatcaa ccgggcgcta attaaagacg      1140
     taagcgagct gatcaccagg gcggaaacgg taaccgaaag tatgaccgca gaacagggca      1200
     ccagcagaag aagcgaagaa caacgcacta ccaggcccga accacgaccg agaacaccaa      1260
     acccgaccag aggcagcaaa gtcgcgaccg actacaaccg ggagacgcac tgctggcgat      1320
     gcggccagac aggacacgac cgcttcaaat gcccgaactc ggcagttaga ttctgctcct      1380
     actgcgggaa agtaggcgaa atgacacgaa cctgcctatg tgcaaggcag ggaaacgcca      1440
     gaggggccgg aaagacccgg ccccagtaaa ccagccaaca aacacagacc agcgcggaag      1500
     cgagacaaac cttccacgca agaagaacca ggagaagaag gaaaagccga accagccagg      1560
     agaagaccgg aagaccgtcc attgccagat cgccgagaac cctcggccaa cggccgttgc      1620
     aaacgaccgg attatcatca ccgtccgagt aggacaatgt tacgtggaag ccctactcga      1680
     cacaggagcc gccgcgtcgt acatcagcga cgagacggcc gaaatctgca agcaagcagg      1740
     atgggagata gaagatcacc agctatcctc ctccttagcc aatggtcaag aaatgaaaat      1800
     ctacgccagc tatagggggc agggactgtt caacggcatg cgtagaaaac accgcttcta      1860
     cgtcatgcca aatttggcct atcctatgct aattggcatg gacctattac gcaggcttgg      1920
     cctgcaagtc tggctaggag agcaacgcgt ggacaggaaa gacgcccaga accagccgac      1980
     aagtctacct gtcccgtgta cgataaaagc gccaattggc ctggcagagc tcacaccaga      2040
     tgaccaggag cagctcgacc aattcctaag gcgcgagaag agagctttcg aggggatacg      2100
     agggctcacc ccgctaatcg agcacgagat ccggctcgaa gaaacgacgc cgataaaaca      2160
     acggtaccga ccacgcaacc cggccatgca gaaactgatc gacgaggaag tcgaaaagat      2220
     gctgacagac ggggtaatac agccatctag cagcccatgg agttcaccca tcgtcatggt      2280
     gaagaagaag gacgggaaat accgtttctg cgtggacttc cggaaattaa accaggtcac      2340
     gcgcaaagat gcgtatccgc tgccgcacgt caatgcgaca ctcgacaaat tgcggggagc      2400
     aagatacctc tccacaatag acctgaagaa cggttactgg caagttccgt tatcaccgga      2460
     aagcagacca ctaaccgctt tcacagcacc aggacgagga ctaatggaat tcgtcgtcat      2520
     gccatttgga ctgcactcgg caccgtcaac attccagaga ctcctggacc gagtgattcc      2580
     accagaaatg gcgccgcacg ccttcgctta cctagacgac atcgtcatag ttacttccac      2640
     gttcgaggaa cacctacggg tcctgaccga ggttttccgg cgacttcggg cggcgaaact      2700
     acgcccgaat tgggaaaagt gccacatggc acgaaacagt ctaaaatatc ttggacacat      2760
     cgtggacaac gaaggcctgc ggacagaccc ggaaaaagta tcagccgtag cggaattacc      2820
     gccgccagcc aacatcaagg acctgaggag atttttgggc ctcctatcct ggtacagacg      2880
     ctttgtaccg gacgtctcaa aagaggcggc cccactgaca accctcctac gcaaagacgt      2940
     acggtggacg tggggcgaga aacaacaaca ggcgttcgac gagctaaaga agcgcctcat      3000
     cgattcacca gtcctggcga tgccggactg gaataaaacg ttcatcctac agaccgacgc      3060
     gagcacggaa ggcctgggag ccgtgctcac acaagaagac gaccagggcg aacgagtcat      3120
     cgcctacgcc agccggaccc tgaacaacgc cgagaaaaac tactcggcca ccgaactcga      3180
     atgtcttgca gtaaaatggg gcatctggaa gatgcgccac tacctggagg gataccattt      3240
     catcgtggtc actgaccacc aatctctaaa atggctagag aaaatcgaca gcccgtcagg      3300
     acgactcgca cgatgggcat tagaactcgg ccaatgggac ttcgaaatcc gctaccgacg      3360
     aggtccagag aacacggtcg ccgacgccct gtcacggcga ccgcagccag tctgcggcat      3420
     ccagcaacca gcacaaggaa actggtacaa caggaagtac caggaagtcg aaaacaaccc      3480
     agaggaccac ccggagtaca ggatcgaaaa cggcatcctg tacaggaaca tcctacacac      3540
     attggacttc aacgagattg aaccggacca acaatggaag atctgcgtac cggaagacca      3600
     gaaaaccagg gtcctgagag aggcacacga tatcccgacc gccggacacc ttggcgtggc      3660
     caaaacgctt gcacgcctgg cccattcata ttactggcca gggatgctac gcgaagccac      3720
     aaaatacgtc agggactgta caagatgcca ggaatacaaa gtaaaccagc aggccacccc      3780
     aggaaacatg tacgcaacca acgtacagca gccatgggaa atggtttccg cagacctcgt      3840
     cgggcctctc ccgaggtcaa agaccggaaa cacgacacta ctggtaatcc aggaccggtt      3900
     cacgaagtgg atagaactcc gaccgcttcg acgagcgacc ggaccagccg tcgcaaaggc      3960
     tctaagagaa ttggtcatcc tacgccacgg aacaccgcgt gtcgtaacca ccgacaacgg      4020
     caagcagttt gtcggaaaag agttcgaaaa aactcttacc gaaagcggca ttaagcaccg      4080
     gcgcacacca ccgtacgcgc cgcagtgcaa ccccgtggag cgagccaaca gggtaataaa      4140
     aacgatgatc agccaggacc tgggaaagac gcaaaaagcg tgggatgaac atctcccaga      4200
     aatcgcattt gcgtacaaca cggcacgaca cgactccacc ggatatacac cggcatacct      4260
     caacaccgga agagaactga cacctccagg aagcctccaa caggagaacc agcgaaggac      4320
     aaccacccca tgggcaacac gtctcaaaaa tttgagagac gcccaggaac tcgcccggac      4380
     tcgactcgcc caggagtttc aacgccagca acgccactac aaccaacggc ggcgcaactg      4440
     gcagccgaaa atcggcgaac gcgtgtggaa acgcacacat attctgtcca gcaaagccga      4500
     cgcgaggaac gcgaaactct cgaagaaata cgacgggccc ttcagggtcc acaaacgagt      4560
     ctcaccggta attttcgacc taagggaccg ccaaggaaaa cgcgtggacc acgtccacgt      4620
     cagagaccta aaaccggtga ccggcacaag ggacacgaag ctgcgcaaag ccactacgca      4680
     gccaagcggt agcgacgggc catcgcgcaa cgccagcgcg cagccgagca gcagcagcga      4740
     gccaacgcgc aacctcaacg cgcaggggcg cgacgtcacg ggccccctcc ccgccggaca      4800
     tggaccagcg gctataaaag gccagcagca gcggcagaga gctcagactc gagatggctg      4860
     caagacagct ggaagaggag atttcggcag ctatacgccg cctaaacctg cgagaaaaag      4920
     cagagcacaa cccgctaacg ctaacgccac aggagtggaa aaagttcata cgcctaacga      4980
     tgccacggag tgcctggtgc gaggcgccaa cccgcagagc gaccagaccg gcccgggtcc      5040
     agacaccggc caggcggccg cccgtcaccg ggctaacacc ggcgaaacac aggccgcttc      5100
     cgctggcccc gggagaccgg ccaccgggaa catcgatggc cgtccgcaac acggccaaac      5160
     ggctcgcgga agccgctggg ctgacgacca ccccggagct cggaaacccg ccgccggcaa      5220
     ccagggaacc ggccaagatg acggcggaag ccgtggccga cgcagcatgg gccagccgct      5280
     gccagcgggc agcaacgatg ccggacccga cgccgaccct ggtcaccgcg tgcacaatag      5340
     accaaccagg gacaaaggag gtgataacgt acaccctggc agacgggaca gatgtccaat      5400
     tgtacacggg agtgaggcga caccgcctca cgaaaaacgg ccgacgctgg accattaacc      5460
     tggaccacga aggaagggtc atccggtgcg tgtacacgga ggtaattatc ctggtcacct      5520
     tcatcttttg cgcgaccagc cgattacgcc tggtctcccc ggaggaggag ggggg           5575
//
ID   Gypsy-6_OsLi-LTR repbase;    DNA;    INV; 1051 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-1051
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2026-2026 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1051 BP; 197 A; 346 C; 292 G; 215 T; 1 other;
     tgcgacgaca gccgcggatc ggcgtcgcgc atcgcgggcc cccaccgcgg cggcatcccc        60
     actcccgagt aattagacta taagtaggac cgatcgatgc gcggatcgat gagttgcctc       120
     ggggcttcgg ccccgagggg acctcctcgg aggtccggac cggagcacca gagctctcga       180
     cgccatggct gacctggcga agagatctct ggccaacggg ccgtagcatt gcactacgct       240
     acgacctggc agctccccta ggtccagcgg ccgtaggcgc ctagcctcgt cagtcccgtg       300
     gttgacccgg ggtgaccaag ctagtgcgcg ttcataatct ctgctggtgc ttccgcgggg       360
     attccgaacg ctagcttact cggcaccgca atttgccttt ggcagccgat tccgtccagc       420
     tttgtggcgt tacccaggct ggccaggatt ggtcgtcgac tcgttcgctg ttcggttcta       480
     cctcggcgta cgagaagacg agccgcgtga ggcaagcggg cagcaactcc accgcagcgc       540
     gaaacaccgc agcgcgattg aataaacacc gtcggcccaa ccgggccaat cccatcccga       600
     ctckacctct cttgcgtttg cgtacgtttg cgtttgtttg cgttcgcgct ccgttcagcg       660
     ctttcactcc gcgctccgac atcgcgccgt tagcttgtaa gaccgcgtag cgatggctac       720
     gacctgcgct agaattaagg ccgcgtactt tctgtgacgg accgggttcc gaccgtagtt       780
     cataagtcct gtacattagg cttaagctcg gctccacgcg tctaaccacc agacgacatt       840
     tttgattgta gctcccgagg caggagagca ccgcccgacc agccggcgag ggcagccgcc       900
     gttagatgcc ccctctttaa tgaataaata tttatttttc ctactaacac cgactcatta       960
     tttaccgacc tgttcccatg cgaaccctgg cacggggaaa accgccgcgg tgcgcaacgc      1020
     cgtgcgcacc gaaccgaccg accccgttac a                                     1051
//
ID   Gypsy-6_PBa-I repbase;    DNA;    INV; 4340 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4340
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 681-681 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~85% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..1195
FT                 /product="Gypsy-6_PBa-I_1p"
FT                 /translation="MMDRSPPRPALRDDSSALQPPPQRSHRPGSPPNEASS
FT                 VFRPPARSSSHTPNLDLXDXDVESINNCRLPPFWKTNPDLWFFQIESVFAS
FT                 SRIRSDDSKYHLVISALDPESLAEVSDIIRAPPASDKYTFLKESITRRFTD
FT                 SADRQLQKLLNELELGDKKPSQLLRQMRSLSGDKASEEILRVKWLSLLPPN
FT                 AQRFLKIFSAPNLDELAVAADHLLEGSSSSYVMSTSHPTRSSSPARRSQAH
FT                 QANLDNLTGHLLEIKSSLAQLISLIRELHSRPVSPASHFSRSRSRSRSRAS
FT                 SPAPQGACYYHRRFGAXAQRCTTPCSFKVNQPSEQPLN"
FT   CDS           join(1319..3586,3303..4325)
FT                 /product="Gypsy-6_PBa-I_2p"
FT                 /translation="YDSGSAVSLVPKRLIARPLRPTDARLHAANGSPIXTF
FT                 GEKILTVDFGLRRAFKWTFVIADVQSAIIGADFLHHYGLILDLKKRALLDA
FT                 LTSLSSKGDLAVASVFGISSGPPGLPPDPIASSYQALIKEFEDLGRAKPRF
FT                 PAASAHVEHHIVTSGPPVAERTRRLAGEKLKAAREDFEXMLHHGIIRPSNS
FT                 QWASPLHMVGKKKGGWRATGDYRRLNAQTVPDRYPIPRIDDIFQRLHGKSI
FT                 FSTLDLERAYFQIPVAQADIAKTAVTTPFGLFEYLGMPLGLRNATQTFQRH
FT                 MDNIFRGHDFVSCYIDDVIIASSSHEEHLQHLRTVFELLRSLSANLNWSKC
FT                 QIGQKELNYLGYTLNAQGFRPPTERVEAILAYPKPETISDLRRFLGLINXY
FT                 RRTVPXAAQLQAPLCVFLQGAKKRDKRKIPWTTESEAAFQACRSSLASATL
FT                 SSYLSPSAPLRLTTDASDSAIGASLEQLXEDSWKPLGFFSRKLSRXERNYS
FT                 TYDRELLAIFASIKFFQHILEGRQFAIRTDHRPLIYAFSQRSEKASPRQCR
FT                 QLDYIGQFSTSISHVKGDENTVADALSRVNAITMPTALNAATLHXAQAEDN
FT                 ELPSLQENTSLNLLRITIEGFDIYCDVSSGWVRPYIPEALRRQAFAVVHNL
FT                 SHPSGRATARTLREKFIWPGIKKGRSPLGSRMPSVPTGEGPPTQPKRARQD
FT                 HCSGRTLQPCPPRHHRAASGKRSQILSHHNRSFHQMASCDSAQGHPGEHSG
FT                 HGVLWERNSFGQESRKDALRWARECLPCQRAKVHRHNRSEPAKITVPDGRF
FT                 NHVHLDIIVLPQVNDLKYCLTIIDRFTRWPAAIPLKDIQASTVATAFYGSW
FT                 ICQYGTPLTITTDQGTQFESALFSALAKMVGARRTHSTPYHPQSNGIIERW
FT                 HRTLKAALMCNPDIPWPQLLPTVLLGLRTAVKEDLQASPAELLFGTSLRIP
FT                 GEFFVTQDLPSDPQEFLPALRDHIRSIRPTPTAHHTRPRHFVLQDLATCTH
FT                 VFKRVDSVKKPLEPPYTGPHQVIRRLNNKVFVILVNGTEKTVSADCLKPAY
FT                 LASTTEPAHPRPAASSFTASIYSSYQEGTFFVPFATGEDH"
XX
SQ   Sequence 4340 BP; 947 A; 1460 C; 1037 G; 878 T; 18 other;
     aattggtgac cccgagcgtc cgatcctcgc cagcgctcgt cmttctctct cgtgtgcctc        60
     tcgtggcgca atcctctgta actggtcttt ttgtgtttcg cgcgttttgc ggtcgaccag       120
     ttttcctgtg caaccgtgtc cggttttcaa tcagtgcgtt caattccgtg tgctcagtgc       180
     ccgcgttcgt gtgctcgtat cgaagatgat ggaccgctct ccgccgcgcc cagctctgcg       240
     cgacgacagc tcggctctcc agcctccgcc tcaacgctct caccgcccgg gaagccctcc       300
     caacgaggca tcctcggtct tccggcctcc ggcgcggagc agctcgcaca cgcccaacct       360
     ggatctgcam gacascgacg tcgaatccat caacaactgc aggctgccgc ccttctggaa       420
     gaccaaccca gatctctggt tcttccagat mgagtcggtc ttcgcctcga gccgcatccg       480
     ctcagacgac tccaagtatc atctagtcat cagcgctctg gacccggaat ctctggcgga       540
     agtctccgat ataattcgtg ctccgcctgc ctcggacaaa tacaccttcc tcaaagagag       600
     catcactcgc cgtttcacgg attccgctga tcgccagctg cagaaactac tcaacgagct       660
     cgagctgggt gacaaaaagc cctcgcagct cctgcgccag atgcgcagcc tctccgggga       720
     caaggcctcg gaggaaattc tcagagtcaa gtggctctct ctcctgccac ccaacgctca       780
     gcgcttcctg aaaatattca gcgctcccaa cttggatgag cttgcmgtcg cagcggatca       840
     tctcttggag ggcagcagca gctcatatgt gatgtccacg tcgcatccta ctcgttcttc       900
     gtcgccagcc agacgcagtc aggcacatca agccaacctc gacaacctga caggtcatct       960
     cttggaaatc aagagctcct tggcgcagct catttcgttg attcgcgagc tccattccag      1020
     accggtctct ccagcctcgc acttcagcag atctcgctca cgctcgcggt caagagcctc      1080
     ctcgcctgcg ccgcaaggcg cctgctacta tcatcggcga ttcggtgcck cagctcagcg      1140
     gtgcaccaca ccctgctcgt ttaaggtcaa tcagccgtca gaacagccgt taaactaagc      1200
     cggctgtcgg catctgaggc ggtcgccggc agcagcagca acaacaacgc aatcgccttg      1260
     ccgtcggagg aactccggct tcatgttcat gaccggacaa ccaacatcaa attcctgata      1320
     tgactctggc tccgccgtct ccttggtgcc gaaacgcctc atcgccagac cgctcaggcc      1380
     aaccgacgca cgcctgcatg ccgcaaacgg ctcgcctatc awcactttcg gcgagaagat      1440
     cctgaccgtc gacttcggcc ttcgtcgagc cttcaaatgg accttcgtaa tcgccgacgt      1500
     tcaatcggcc atcatcggag cagacttcct ccatcactat ggcctgatcc tggatctgaa      1560
     gaagcgagca ctactggatg cccttacctc gctctccagc aaaggcgatc tcgccgtggc      1620
     ctctgtcttt ggaatctctt ctggtccgcc cggcctgcct ccggacccga tcgcatcaag      1680
     ctaccaggct ctcatcaagg aattcgagga tctcggcaga gccaagcctc gctttccagc      1740
     agcctccgcc cacgtcgaac accacatcgt gacgtctggg cctccggttg ccgaacgaac      1800
     tcgcagactc gcgggcgaga aactcaaggc tgcacgcgag gacttcgaac kgatgctgca      1860
     ccacgggatc atccgcccgt cgaacagtca atgggccagc ccactccaca tggttggcaa      1920
     aaagaagggt ggctggcgtg ctacaggcga ctaccgtcga ttgaacgccc agacggtgcc      1980
     cgacagatat ccgattcccc gcattgatga catctttcaa cggctccacg gtaaaagcat      2040
     cttctcaacg ctggatctcg agcgagccta tttccagatt ccggtcgctc aagctgacat      2100
     agcmaagacg gccgtcacca cacctttcgg cctcttcgag tatctgggca tgcctcttgg      2160
     tctacggaat gccacgcaga cattccagag gcacatggac aacatcttca gaggacacga      2220
     cttcgtcagc tgctacatcg acgacgtcat catcgcctcc agctcgcacg aggaacacct      2280
     gcaacatctc agaacggtgt tcgagctgct gcgctctcta tcagctaact taaactggag      2340
     caagtgccag atcggccaga aggagctgaa ttaccttggc tacacgctca acgctcaagg      2400
     attcaggcca ccgaccgagc gtgtcgaagc cattctggck tacccaaaac cagaaactat      2460
     atcagatctc cgtcgattcc tggggctgat caattwttac agacggaccg tgccgmacgc      2520
     tgcccagcta caagctccwc tctgcgtctt tctacaagga gcaaagaaga gggacaagcg      2580
     caagattcct tggacaaccg agtctgaagc agcgtttcaa gcctgcagat ccagcctggc      2640
     ctcggctaca ttgtcktcat acctctcgcc ttcagctccg ctacggctca ccaccgacgc      2700
     ctcggactcc gccatcggcg cttctctcga gcaacttkca gaggattcct ggaaacctct      2760
     cggtttcttc tcgagaaagc tcagccgckc ggagaggaat tacagcacgt acgacagaga      2820
     gctacttgcg atcttcgcct cgatcaaatt tttccagcac atcctcgaag gcagacagtt      2880
     tgcaatccgg accgaccatc gtcctctcat ctacgccttc tcacaaaggt cggagaaagc      2940
     ctcacctcgc cagtgccgcc agcttgacta catcggccag ttcagtacct ccatctctca      3000
     cgtgaagggt gatgaaaata cagttgccga tgcgctctcc cgggtcaacg caatcaccat      3060
     gcccaccgct ctgaatgccg ccacgcttca tsaagctcaa gccgaggaca acgagctgcc      3120
     ctccctgcag gagaacacct cactcaatct cctcagaatc accatcgagg gtttcgacat      3180
     ctactgcgac gtctcctctg gttgggtgag accttacatc ccagaagctc tcagacgcca      3240
     agcattcgcg gtggtgcaca atctctctca ccccagcgga agggccaccg ctcgcacgct      3300
     gagagagaaa ttcatttggc caggaatcaa gaaaggacgc tctccgttgg gctcgagaat      3360
     gccttccgtg ccaacgggcg aaggtccacc gacacaaccg aagcgagccc gccaagatca      3420
     ctgttccgga cggacgcttc aaccatgtcc acctagacat catcgtgctg cctcaggtaa      3480
     acgatctcaa atactgtctc accataatcg atcgtttcac cagatggcca gctgcgattc      3540
     cgctcaagga catccaggcg agcacagtgg ccacggcgtt ttatggtagc tggatctgcc      3600
     agtacggcac cccgctcacc ataaccacgg accaaggcac tcagttcgag tcggctctct      3660
     tctcagccct kgcaaaaatg gtcggagcac ggaggaccca ctctactccg taccatcctc      3720
     agtcgaacgg gatcatcgag cgctggcaca ggactctgaa ggcggctctg atgtgcaacc      3780
     cggacatacc atggccacag ctgttgccga ctgtcctgct tggcctacgc accgccgtca      3840
     aagaagatct ccaggcttcc ccggctgagc tactcttcgg cacgtctctc cgcattccgg      3900
     gtgagttctt tgtcactcaa gacctcccat ctgatccgca ggaatttctt ccagcactca      3960
     gggaccacat cagatcaatc aggcccacgc cgacggccca ccacaccaga ccacgccact      4020
     tcgtcctcca ggacctagcc acgtgcaccc acgtgttcaa acgggtggac tcggtgaaga      4080
     agcctctgga gccgccctac accggcccgc accaggtcat ccggagactc aacaacaagg      4140
     tcttcgtcat ccttgtcaac ggaacagaga agacggtctc ggccgactgt ctcaagccag      4200
     cttatctggc atctacaaca gagccagcgc atccccggcc agcggccagc agtttcacag      4260
     ccagcatcta cagctcctac caagagggta catttttcgt gcccttcgcc accggcgaag      4320
     accactgaga ggggagtggc                                                  4340
//
ID   Gypsy-6_PBa-LTR repbase;    DNA;    INV; 1363 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1363
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 682-682 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1363 BP; 203 A; 417 C; 346 G; 397 T; 0 other;
     tgtggcgccc ttgcccccgg tcgctgctcc gctgcctcgc gcgctcgcca ccgagcgcca        60
     ccgtccaccg aggaagcaga cgttggtgcc acgactagag tggtgacttc cgctttcttc       120
     cccgtcggcc attaccacgc gcattgtgtc gaacggccat tacgtgtcaa tcatcggaca       180
     cgcagcagcc acacgtctgg tggagagaag gaagagagag actccggcat catcatcgtc       240
     aacgcgttac tgtgtcgtga ccggtacgtg acagcgactg tgcagtgtaa agtgtcgtgt       300
     acgcgacgaa gtctgtggag tgtcgaaagt tctgtctcgc cggctctgtg cgaccacgtg       360
     cggcgcgccg cacctgttgc gctgagtgct cgccgcctct ctcacactgc gtgcgcctcc       420
     acctctctcg cttgcgcgcg agacgcgagt gcactcgtgc tctctctctc tcgctcgcgc       480
     gtgatcggct gttatctcgc tctctttcac gcgtgagaag tgtctctctc tcttgctcgc       540
     tgtgttccgt cgctctctcg ctcgtgagcg atcaaccgag tgtttctctc tcgctcgcga       600
     gtgacgtctc tactcgcgtt ttcgcatgcg tctcatccgc gtcctgcgtt ttcccgcatc       660
     gcctagttcc gtcgttttta ttcgcgctta caattgtgcc gtcatcaatt tccgcgtgcg       720
     ctccgtttta cccgcgcccg cgttccgttt cgctagcacc cgtgtgtcgt ctcgttttcc       780
     gtccgtgtcg cgtctcgttc tagtccgcgt ttttccgagc gtttcgcgag cgtcttgcgt       840
     gcacacgcag cgtgcgtttc aggcgctccg cctttctctt gcgagcgaca tatatttcaa       900
     gtgcgttctt tcttttcttc attctttgcg ttttctcgtt tctagtgttt agttctcgaa       960
     cgttcctccg tgtccgcggt gcccttgctg gcattgtacg ttacgtgaaa ataacattgt      1020
     cacgcgctgt tctcgtgttc gcggtgcccc tgctggcatt gtacgtcttc gatctctttg      1080
     ttctgtgtta ttagttttta agcgttgtaa atatcgcgtc tttgttctgt taaccctgcg      1140
     actttgatac gttctagatt taacgattgt gtgctcaaga ataaacgtga ccgagtcaga      1200
     acttcgcgag acgttgctgg cgacggtcgg ataacaaaat cgtggcgtga actcagttat      1260
     cctgcctact cctgcctatc agacctttca gggactcgag cctgccttcc tcggcaaggc      1320
     agtgccagca tagccttact ggcagagcaa taaatccgct aca                        1363
//
ID   Gypsy-6_PPo-I repbase;    DNA;    INV; 4292 BP.
XX
AC   scaffold825_cov563;
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Common Mormon butterfly: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PPo-LTR;
KW   Gypsy-6_PPo_; Gypsy-6_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-4292
RA   Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2972-2972 (2015).
XX
DR   Genome; scaffold825_cov563; Positions  271536  275827.
XX
CC   Positions [3072-3620] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           57..4052
FT                 /product="Gypsy-6_PPo-I_1p"
FT                 /translation="MEHARPPAELNLQGGPAARADAWRKWYKQFLVFLKAS
FT                 GVHKGTKEVQSSLLVNLIGPDGYDIYTTFKFKNEEDAEDIDILVKKFNEHF
FT                 GSKQNTTISRFKFFTRSQNRGESIDEYVTALKLLSQSCEFEHLEDGLIRDR
FT                 IVCGVTDGVVRERLLRSEDLTLAKAVKICQANEMSNEETQQIEETKGESTE
FT                 PVPGASGLAVDVVAGAWGAGWRGRGRGGQQRPPPATRRRFDVFRVKCLSCA
FT                 NYKCNGDNRCPAKRAICFLCNQIGHFRKCCQQNYKKVLQLDESYSSDSDLY
FT                 QVSTLRDKCKDNKYGNKWYEYLILNLTGKRELFKLDTGSDLNVISIDTFKK
FT                 LGCDFSILHSDNTRAQSFCGNYLTVIGACDLLWTYKTDTYNLHFIVTKHNC
FT                 QSVLGKDTCERLGMIRRVHTVISSCNIASYNDLFQGLGKLPGRYKIIIDES
FT                 VQPSVCPVRKIPIGVRQKLLVELNRMTELGVIRKVSHPTEWVNAIVVAAKK
FT                 DGGIRVCLDPRPLNKAVRRAHYPLPTLAEIACRLQGATVFSKLDARSGFWM
FT                 CEIDDASADLCTFGTPFGRYQFLRLPYGINCAPEVFHSKIRQILEDLEGVD
FT                 SFVDDIVVWGANIDEHDRRLKALLDRAREVGIKFNRQKCEFAVKQINYLGH
FT                 IFSAGGMQIDKNKLKAITDMPSPHDRPSLERFLGMVNYLSKYIPNYSDEVY
FT                 PLRCLLKKDSEWCWDGVHEAAVARVKRLLSEAPVLALYEARAPVLVSVDAS
FT                 ARALGAVLLQRGRPVEFASMTLSDTQCRYAQIEKELLAIVFALERFHQYVF
FT                 GRADVTVETDHKPLECLFKKALDSVPARLQRMMLRAQAYQFKVMYKPGKYM
FT                 YIADTLSRAPLGEILSDKICNEVEDQTCFLLENVRFSSEKTKLVKECTAKD
FT                 EECKLLIAYIINGWPDNKYEVDERVRAQWSYRELFEYVDGIIFKDNLVYIP
FT                 NGLRKEMVDRVHDGHMGIDRCKRHAREVMFWPGMSRDIEQRVRRCAACAER
FT                 TPRPQREPLLPHHIPDIPWAKVGSDIFQIGKNYYLILVDYFSNFVEVVTIT
FT                 NICSRSIIGALKEQFSRHGIPSQLVTDNGPAYASKEFALFSRTWGFDHITT
FT                 SPNYPQSNGRSERTVRTVKEMLKKSYLSGSDFYLGLLNFRATPRDGIASPS
FT                 ELLMGRRINTRLPIHFSKLKPSRDNSEDYKNIREKQFRSKRRYDCHSRPLP
FT                 ELRPGQKVIIADGVSRRRRGCVQARAAQPRSYFVNDGTGRCYRRNRRHLIN
FT                 IGPQSRGSGAVESVVRCSADTPYTGSGMQRDPGNEPTTSAMSSLFPNNNEQ
FT                 KIDVRQAAILAKNKFKNLFP"
XX
SQ   Sequence 4292 BP; 1214 A; 797 C; 1127 G; 1154 T; 0 other;
     tggtgacagc ggtgttaaat tacgattttg ttagaaaagt gtagtatttt ttcaaaatgg        60
     aacacgctag acctccagca gaattaaatt tacaaggtgg gccggcggcg cgcgcggacg       120
     cctggcgaaa gtggtataaa cagtttctag tgtttttgaa agcgtcgggt gtgcacaaag       180
     gaactaaaga ggtgcaaagt agtttactgg taaacttaat cggcccggac gggtatgata       240
     tctacacgac atttaagttt aaaaatgagg aggacgccga ggacatagac atattggtaa       300
     aaaaatttaa tgaacacttc gggtcgaagc aaaatacgac gatatccaga tttaaatttt       360
     ttacgcgatc tcaaaaccga ggcgagtcca tagatgaata cgtcaccgcg cttaaattat       420
     tgagccagtc ctgcgagttc gagcatttag aagatggatt gatacgcgac agaattgtct       480
     gcggagtaac ggacggtgtt gtcagagaaa ggttactcag gtccgaggat ctcactttgg       540
     ccaaggcagt caaaatatgt caggcaaatg aaatgtccaa tgaggaaacg cagcagatag       600
     aagagacaaa aggagaatca acggagccgg tgccgggagc gtcgggtctc gcggtggacg       660
     tcgtggcggg cgcgtggggc gccgggtggc gcgggcgcgg ccgcggcgga cagcagcgcc       720
     ccccgccggc gacgcgtcgg cgcttcgatg tttttcgagt taaatgttta agctgtgcta       780
     attataagtg taacggtgat aacaggtgcc cagctaaaag ggctatttgt tttttatgta       840
     atcaaatagg acattttaga aaatgttgtc aacaaaatta taaaaaagta ttgcaattag       900
     atgagagtta tagcagtgat agtgaccttt atcaggtttc aacgcttcgt gacaaatgta       960
     aggacaacaa gtacggcaac aaatggtatg aatatttaat tttaaattta actggaaagc      1020
     gcgagttgtt taagttagat acgggttcgg atttaaatgt tatttctata gatacgttta      1080
     aaaaattggg atgtgacttt tctattttac attcggataa tacaagagcg cagtcatttt      1140
     gtggtaatta cttaaccgtt atcggagcat gtgatttgtt atggacttac aaaactgata      1200
     catataattt acattttatt gttactaaac ataattgtca aagtgtactg ggaaaagata      1260
     cttgcgaacg attgggtatg ataagacgtg tccatactgt gatatcgtca tgtaatatcg      1320
     catcttataa cgatttattt caagggttgg gtaaattacc agggaggtat aaaattataa      1380
     tcgatgagag tgtacagccg tctgtatgtc ccgttaggaa aatacctatt ggtgtaagac      1440
     aaaaattatt agttgaattg aatcgtatga cggagttagg cgtgataaga aaagtgtctc      1500
     atccgacgga gtgggttaat gcgatagtcg tggccgccaa gaaagacggt ggcatccgcg      1560
     tgtgccttga cccgcggccg ctcaacaagg cggtgcgccg cgcccactac ccgctgccca      1620
     cgctcgcgga gatagcttgt cggctgcaag gggcgaccgt ctttagcaag ctcgacgcgc      1680
     gctcgggttt ctggatgtgc gagatcgacg atgcgagtgc cgatttgtgt acttttggca      1740
     cgccctttgg gcgttatcag ttcttgcgtt taccgtacgg aattaattgt gcgccagaag      1800
     tttttcattc gaaaattaga cagattcttg aggatttaga gggcgtcgac tcgtttgtag      1860
     atgacatagt agtttggggc gcgaatatcg acgagcatga taggcgatta aaggcccttc      1920
     ttgatagggc cagagaagta ggaattaaat ttaaccgtca aaaatgcgaa ttcgccgtaa      1980
     aacaaattaa ttatttaggt catattttta gtgctggcgg catgcagata gataagaata      2040
     agttaaaggc cattacggat atgccgtctc cacatgatag accttccctg gaacgttttt      2100
     tgggcatggt taattattta tcgaaatata taccgaacta ttccgatgag gtttacccgt      2160
     tgagatgttt attaaaaaaa gatagcgagt ggtgctggga cggtgtgcat gaggcggccg      2220
     ttgcacgtgt aaaacggcta ctgagcgagg cgcccgtgtt ggcgctttac gaggcgcgcg      2280
     cgcctgtgct cgtgtctgtg gacgcgagcg cgcgtgcgct gggtgcggtg ctgctgcaac      2340
     gcggccgccc cgtcgagttc gcctccatga cgctcagcga tacgcaatgt cgttatgcgc      2400
     agatagaaaa ggaattgttg gctatcgttt ttgcgttaga gcggtttcat cagtacgttt      2460
     ttggtagggc ggacgtcacg gtggagaccg atcacaagcc cttagaatgt ctgtttaaga      2520
     aagctttgga ctctgtgccg gcacgcctcc aacgtatgat gttaagagcg caagcgtatc      2580
     aatttaaagt tatgtacaag cccggaaagt atatgtatat tgcggacaca ctatcgaggg      2640
     cgccgctagg agaaatattg tctgataaaa tatgtaatga ggttgaggat cagacctgtt      2700
     ttttgttaga aaatgtcaga ttcagtagtg aaaaaacgaa actagttaaa gagtgtacgg      2760
     ctaaggatga ggagtgtaaa cttttgatag cgtatataat taatggctgg ccggacaata      2820
     agtatgaggt cgacgaacgt gttcgcgcgc agtggtccta tagggaatta tttgaatacg      2880
     tcgacggcat aatttttaag gataatttgg tgtatatacc gaatggtttg cgcaaggaga      2940
     tggtggaccg cgttcacgac gggcacatgg gcatagaccg gtgcaagcgt cacgcgcgtg      3000
     aggttatgtt ctggccgggc atgtcacgtg acattgagca gcgcgtgcgg cgctgcgctg      3060
     cgtgcgccga gcgtacgccg cgcccccagc gggagcccct gctaccacac cacataccag      3120
     acataccctg ggccaaggta ggttccgata tttttcaaat aggaaaaaat tattacctta      3180
     tattagtgga ttatttttcg aatttcgttg aggttgttac gataactaat atttgtagca      3240
     gatcaattat tggtgctcta aaggagcaat tttcgcgaca cggcattccg tcacagctgg      3300
     tgacagacaa cgggccagct tacgcatcta aagaattcgc attgtttagt cggacttggg      3360
     gtttcgatca tataacgacg tcgcctaatt atccgcagtc gaatggacgg agtgaaagaa      3420
     ccgttagaac cgtaaaagaa atgttaaaga aatcgtattt gtcaggcagt gatttctatt      3480
     taggattatt aaatttccga gccacgccgc gtgatggcat tgcatcgcct tcggagctgt      3540
     tgatgggtcg tcgaataaat actcggcttc ccatacattt cagcaaactc aaaccttctc      3600
     gagacaatag tgaagattat aaaaacattc gcgaaaaaca gtttaggtct aagagaagat      3660
     atgactgcca ctcgaggccg cttccggagc tgcgacctgg acagaaagtg atcatagcgg      3720
     acggagtgag ccggcgcagg cgtggttgcg tacaggcacg cgctgcgcaa ccgcgatctt      3780
     actttgttaa tgacggcaca ggcaggtgtt acagacgtaa taggcgacat ttaattaata      3840
     tcggtcctca gagcagaggc agcggcgctg tcgagtctgt agtgcgctgt agtgcggata      3900
     cgccttacac aggctcggga atgcaacgcg acccaggtaa tgagcccacc acaagcgcaa      3960
     tgtcgtcact atttcctaat aataatgagc aaaaaattga tgttaggcag gcggctattt      4020
     tagcgaaaaa caagtttaag aatctttttc cgtgattaaa atttaactta ttagtgttac      4080
     tagtgtatta tcatattatt atgtgtggtt ttaggtatct taagatgaag tttagccatt      4140
     tttgttatgt aaaaaaaaaa agaaaacatt gtatatttta agtattatag aaatgttaag      4200
     gtgcatacac tttaagtttt tatattgtac taacaagtga agtagtaatg agatattgtt      4260
     tttcacaact gttaaaaaaa aaaggaggat ga                                    4292
//
ID   Gypsy-6_PPo-LTR repbase;    DNA;    INV; 105 BP.
XX
AC   scaffold825_cov563;
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Common Mormon butterfly: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PPo-I;
KW   Gypsy-6_PPo_; Gypsy-6_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-105
RA   Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2973-2973 (2015).
XX
DR   Genome; scaffold825_cov563; Positions  271431  271535.
XX
SQ   Sequence 105 BP; 34 A; 9 C; 16 G; 46 T; 0 other;
     tgtagtatct gtattaaata agttgtttta taatctgtat atttttatat tcatttagag        60
     ggtataataa aataacagtc ttgtgcaata tggcgtttca ttaca                       105
//
ID   Gypsy-6_RP-I repbase;    DNA;    INV; 4368 BP.
XX
AC   ACPB02021416;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_RP_;
KW   Gypsy-6_RP-LTR; Gypsy-6_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4368
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02021416; Positions    1846    6213.
XX
CC   Positions [3327-3836] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1242..4259
FT                 /product="Gypsy-6_RP-I_1p"
FT                 /translation="MTYLIDTGAAMSVIPPSIAGRRTPQKFPLYAANGTVI
FT                 HTYGEKQMRLDLGLCKAFTWTFIVAAVPKPIIDADLMFHYGLLVDLKGRQI
FT                 IDQQTGLTSKGYVVRVISPSISAIPEGQPFANILKDFPEITRPSPIIEHQA
FT                 PVKHCILHHIETSGPPVVAKARRLAPERYRAAKEEFRRLMEEGICRPSKSP
FT                 WASPLHVVVKKDGSLRTCGDYRRLNAQTLPDRYGVPNILDFNVHLHDKKIF
FT                 SKIDLIRAYYQIPVAAEDIPKTALITPFGLYEFTRMCFGLRNAAQTFQRFM
FT                 DAIFRDLDYCFVYLDDILVASENVQQHEQHLREVFHRLKEHGIVINPNKCL
FT                 FGKDEIEFLGYKVTPCGIKPLETRVQAIAQYPLPNTVSELRRFLGMVNFYR
FT                 PCLRKAAETQRPLNRYLKNSKKNDKRVIEWTDETRTAFERCINDLQEATYL
FT                 GHPAIDAYVTLACDASDTSVGAVLQQREGDVWVPLGFYSKTLNPAQVKYST
FT                 YDRELLAIMLAIKHFRQTLEGRNFAFLTDHKPLIYAFRQKKSPDSPMRTRW
FT                 LNFISEFTTDLRHVEGETNRVADALSRIEDVSLEPDWANLSHAQGNDPKLH
FT                 SLRNQSNLSWNHLIIPGCEEHIWCEMTTGNCRPYLPAAFRRSTFDRMHSFS
FT                 HPGPRASRKLIGSKYFWPRMNSDIGKWAKSCLSCQKAKITRHTVAPLGSFP
FT                 ACKRFEYVHIDFIGPLPPSKGFLYCVTMIDRFTRWPEVVPVQDICAETVAT
FT                 VFFQSWVSRFGTPRIITSDQGRQFESALFRSLMNILGTNRIRTTAYHPQAN
FT                 GCVERMLKSALIAHTNPASWADALPSVLLGLRVAVRKDTNASVADAVYGQA
FT                 LRIPGEFLTPATGSENINHIQQLRAFVSQLRPPAEPTSQRTFIHPQLSTCT
FT                 HVFLRDTTPKKSLQPTYRGPYQVLSRGSKTFNIDLDGKETTVSIDRLKPAF
FT                 ILADPGDSTPTPTPPAKTSVPSQQTPNYTTTRSGRVVKPSVRFLDAVTGGE
FT                 "
XX
SQ   Sequence 4368 BP; 1275 A; 1000 C; 999 G; 1094 T; 0 other;
     ttggtgaccc cgacgtgata ctgtggtaac aaaaacatta gggattataa gaatcatttc        60
     tttgtagtat ttgtgttgtt gcaaattggt gttaattttt ttttcttttt ctagttttat       120
     atgtattcta aataattttg tttttaagaa cttttcgttg tttgtttacc tttgatatgt       180
     gtactattgc catgttaata ctatattagt tattgttccg aatgattggt tttggttttt       240
     attagacagt tgaattactt tatattctca agccattttt tttttttttt ttttataact       300
     atttattagt gtaagttaac gattttattc tttctaatta ttagctatgg gttctaaaga       360
     taaaagtgtc tccaccgaaa tagggctaac agtatctcca gacataggag cagtttcagc       420
     tactaacaga attccgccat tctggaagag cgacccggaa ttgtggtttg ggcaggtaga       480
     atccgtgttc ttaaaggcaa atataaccga cagtgaaact aaattccata caattgtgcc       540
     aactttagag ttcgatgttc tcaagcaggt cgccgacctc gtcaagtcga ggcctgccaa       600
     caacccctat gaagctttaa aggaaagact aatagacacc tttgcagagt cggaaaacaa       660
     gagaataact caattgctcg aaggtaaaca gcttcccact tgttacgtca gatgcagtta       720
     ttagcggggg atacggtagc aaaagatatg gtgaaaatgt tgtgaatccg atcattgcct       780
     tcaaacatgc aagcgatttt gcaagcaaca ggacaaacta aaccgctcgc attggcggac       840
     gtagctgata aaattcacga agtggcagtc cccgcggata tctgtactgt ccataaacca       900
     agcccaacag aggatttgat tcacgaagtg cagcgcctta cccaggaagt ggctgaacta       960
     aaattacaag caaaacataa cgaaatgaga ggaaaaagag agagatctcg ggccagttcc      1020
     cgcggtagat ccgggcaacg agggctgcag cagtcatcct ggttgtgctt ttaccattat      1080
     aggtttgggg acaaggcaca aaaatgtgag aaaccctgta actggcaaaa taaggaagga      1140
     caaggagaag acccgggaaa ctagaagagg tgctgggtgt ggcggaaccc agtaccgcac      1200
     aaacgcaacc ccgcctgttc attaaagata ggcgatctgg aatgacttac ttaatagata      1260
     cgggtgcagc aatgtcagta atccctccat cgatagcggg tagacggacg ccgcagaaat      1320
     ttccgttgta cgccgccaac ggcaccgtga tacacactta tggcgagaaa cagatgaggc      1380
     tggatttagg actgtgcaag gcattcacat ggacatttat tgtagcggcg gttcccaagc      1440
     ctataattga cgcagattta atgttccatt acggactctt ggtggacctt aaaggtcgtc      1500
     aaattatcga ccagcagacg ggactgacat cgaaaggata tgtcgtaagg gtaatatcac      1560
     ccagtatatc agcgattcca gaaggccagc catttgcgaa cattcttaag gattttcctg      1620
     agataactcg cccctcaccc atcatagagc atcaggcacc agttaaacac tgcattctac      1680
     accatataga aacttcaggg cctccggtgg tcgctaaggc aaggcggtta gcgccggaaa      1740
     ggtatcgcgc agccaaagaa gagtttagaa ggttgatgga ggaaggaatt tgtaggccct      1800
     cgaagagccc atgggccagt cctcttcacg tggttgtaaa aaaggatggg tcgcttagga      1860
     cttgtggaga ctaccgacgc ctaaacgccc aaactctacc tgataggtat ggggtaccga      1920
     atatactgga tttcaacgta cacttacacg ataaaaaaat cttttcaaag atcgatttaa      1980
     ttagagcgta ctatcaaatt ccagttgcag ccgaggatat ccccaagacg gcgctgatta      2040
     ccccgtttgg gctctacgaa tttactcgta tgtgttttgg ccttcgcaat gccgcgcaga      2100
     cattccagcg ttttatggat gcaattttta gagacctgga ctactgtttt gtctacctcg      2160
     acgacatcct agtggcatca gagaacgtac aacaacacga acaacactta agagaggttt      2220
     ttcacagatt aaaggaacac ggtattgtca taaacccgaa caagtgctta ttcgggaagg      2280
     atgaaataga atttttagga tataaggtaa caccttgcgg cattaaaccg ctcgaaacta      2340
     gagtccaagc tatagcgcaa tatccactgc caaataccgt gtctgagcta agacgttttt      2400
     tgggcatggt taatttttat agaccttgcc ttagaaaggc ggccgagacc cagcgccctt      2460
     taaataggta ccttaaaaac agtaagaaaa acgataagag agtcatcgaa tggaccgatg      2520
     aaacacgaac cgcttttgaa cgttgcatca acgacctcca agaggccaca taccttgggc      2580
     accccgcaat agacgcatac gtcacactgg cttgcgatgc ctccgacacc tccgttggag      2640
     cggttttaca acagcgagag ggcgacgttt gggtaccttt ggggttctac tccaaaacgt      2700
     taaacccagc gcaagtcaaa tatagcacct atgatagaga attactggcc ataatgctag      2760
     cgatcaaaca tttcagacaa actttagaag gcagaaattt tgctttctta actgatcaca      2820
     agcccctgat ctacgctttc cgacagaaaa aatcgccaga ttcgcctatg cgcactaggt      2880
     ggcttaattt cataagcgaa tttaccaccg atttgcggca cgtagaggga gaaacaaatc      2940
     gagttgcaga cgccttatca cggatcgaag acgtatccct agagccggac tgggcgaact      3000
     tatcacacgc acagggaaat gaccccaaac tccattcact tcgtaaccag tcaaacctct      3060
     cttggaacca tctcattatt ccggggtgtg aagagcacat ttggtgcgaa atgaccactg      3120
     gcaattgccg tccatattta cctgctgcgt ttaggagatc cacgtttgac agaatgcact      3180
     cattcagcca ccccggacca agagcaagcc gcaagttgat cgggagcaaa tatttctggc      3240
     cccggatgaa ctctgatatt ggcaaatggg ctaagagttg cttatcctgc caaaaggcaa      3300
     agataacgag acacaccgtg gcacccctgg gaagtttccc tgcttgtaag aggttcgaat      3360
     atgtgcacat cgatttcatc ggcccactac ctccatcgaa aggttttttg tactgtgtca      3420
     ctatgataga tcgctttact cgatggccag aagtagtgcc tgtacaggat atatgcgcgg      3480
     aaactgtagc aactgttttt tttcagtcct gggtgtccag gttcggaaca ccccgcataa      3540
     taacatccga ccaaggaagg caatttgagt cggcgctatt ccgtagtctt atgaatattc      3600
     tggggacaaa tcgcataaga actacggcgt atcaccccca agccaacggc tgcgtcgagc      3660
     gaatgctgaa aagcgctctt attgcgcata caaatccagc aagttgggca gatgcacttc      3720
     catcagtact gctgggatta cgggttgcag ttagaaaaga cacaaatgcc agcgtggcag      3780
     acgcagtgta tggtcaggcc ttgaggatac caggagagtt tctcaccccg gcaaccggat      3840
     ccgaaaatat taatcacata cagcagttga gggcgtttgt gagtcaactc cggccgccag      3900
     cagagccgac atcgcaaaga actttcatac acccccaact ctctacttgt acacatgtat      3960
     tcctcaggga cacgacccca aagaaatcct tacaaccaac ttatagaggg ccatatcaag      4020
     tcctgtctag gggtagtaag acgttcaata ttgatttgga cggaaaggag actactgtgt      4080
     caatcgaccg tctcaagcct gcttttatac tggctgaccc aggtgattcg acacccactc      4140
     caacgccacc agcgaagaca tccgtaccct cacaacaaac accaaactac accacgaccc      4200
     gttccggcag agtggtcaag ccctccgttc gattcctaga tgccgttact gggggggagt      4260
     gatgtggggg agccccataa ccagtaacgt catctaggat ctgtatcgaa cataagatcg      4320
     atggataacc tagggcaggg ttacactaaa accgtgtgca gatatata                   4368
//
ID   Gypsy-6_RP-LTR repbase;    DNA;    INV; 128 BP.
XX
AC   ACPB02021416;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_RP_;
KW   Gypsy-6_RP-I; Gypsy-6_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-128
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02021416; Positions    1718    1845.
XX
SQ   Sequence 128 BP; 27 A; 25 C; 21 G; 55 T; 0 other;
     tgtatgtact ctttctttgc gagcgtagtt aagtacgcgc ccttacttat attctctgta        60
     gatcagtgtt ttaattaaat cgtattgtgt ttctttttgt gttggtaaat cacctacatt       120
     ctcccaca                                                                128
//
ID   Gypsy-6_SI-I repbase;    DNA;    INV; 4219 BP.
XX
AC   AEAQ01015719;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SI_;
KW   Gypsy-6_SI-LTR; Gypsy-6_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4219
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01015719; Positions     247    4465.
XX
CC   Positions [1760-2263] - Reverse transcriptase
CC   Positions [3320-3796] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1277..2878,2882..4198)
FT                 /product="Gypsy-6_SI-I_1p"
FT                 /translation="MRGNRTIKFRGAGSGENTTLGEIQLKICIDMEIYDIV
FT                 IHIVRDGIILHGMLIGSDFLSQVKVHMKNGVIKISKITHDYGELPEIYKID
FT                 VVQDANKIDLSHITDECVKNEIEYLVKKYKPRKEKDVNIQMSIVVKDDIPV
FT                 TQSARRLSAVEKAEVELQIREWLDKGIVRPLCLDYASPIVLVKKKNGATRI
FT                 CVDYRKLNEKVVKNRYPLPLIEDQLDLLQGATLYSTLDLENGFFHVAIEES
FT                 SRKYTAFVVSNGHYEFLKMPFGLCTSPSYFQKYVNAVFRDLTAKEIIAIYM
FT                 DDLIIPVNVQEGLSRLKLVLETAAKHGLSFNWKKCRLLEPRVNYLGYVVED
FT                 GKITPSEEKAIAVRHFPKPINIRAVQAFLGLTGYFRKFVPRYSHVARPLTD
FT                 LLKKNVKFDFGKEQELAFNQLKQALSDKPVLHLYCPTAETELHTDASALRF
FT                 GAILLQRDSEDGMFHPVYLASSKTTSGEAKYDSYKVEVLAIVRALQKFRVY
FT                 LIGISFAIVTNCKAFTQTMKKKVISAQVAGWALFLEDFYSIVHRPGNNMRH
FT                 VDALSRYPLPAAMIIEECDSSILVRLRRNQLEDEELKGIEKQLEENRIDGF
FT                 TMRNGLLCKENNGVVPKLMQTALIRQVHKRGHFRSTKTEQLLKADYWFKNM
FT                 HSKIEKVIQSCLACIMVTKKSGKQEGLLYPIKKEAPLDTYHIDHLGPMPST
FT                 PKKYQYIFAVVNAFTKFVWLYLTRSTSAAKVLDHLMKQAAIFGNPRRIISD
FT                 QGSAFKSGDFKAYCKDEGIEHTLIVTGIPRGNGQIERINSTLIPLLTKLSM
FT                 PQSTRWHTFVARAQQYLNHVPSRSTGITPFHQLFGARMRLKDDPQIKEILD
FT                 TENATIFQEEREHMREEAREAISKIQAENKRTYDKKRKKPNTYQENSLVAI
FT                 QRTQGGPGLKLCTKYLGPYKVKRTLRNDHYIVEKIGEGEGPRRTSTAVDHM
FT                 KPWTNLQEDPPDDGKDNI"
XX
SQ   Sequence 4219 BP; 1494 A; 763 C; 992 G; 970 T; 0 other;
     gcgtagcgtg cgtgagcgtg cacgtgcacg tagagaggac agattcgtgt acgaaagttg        60
     taagaataaa cgccattatt gtccacttct cgaaaccacg ccttgtgaac catatcttac       120
     caacatcctt aaagtaaacc tacaattggg ggctcgtagc tgggatcaag gcagagaaga       180
     aattgaggag aaagatgtcg gactacggtg aaggacgaga ggacgacgca aacgacgcaa       240
     acgacgtgtt acaagtcgac acgatgacgg tggcccagat caagaaaaag ctcagggagc       300
     tcaagctgaa ggtaacgggc aataagatcg atttggtggc acgattaaag gcggctttaa       360
     ccctggacga tcaacacgaa aacgaaagca acgatgacga cgagtctagc ggcgagagca       420
     acaacgaacg aggcgccggc ggtaatggcg gcgaggaaga cgaaagacgt aaccggcaaa       480
     aatatatgcc gactttcaaa gacgtagaag aatcaatcga cacattcagc ggagacgacg       540
     gtaaaaatat caagttgtgg attgaagaat tcgaggaact ggcgaaactg agtgagtggg       600
     acacagtaca aaagacgatt tacgcaaaag gctattacgt ggctctgctc gtttgttcat       660
     aaaagctgac ggtggaaaga cgtggagtgc gatcaagatg gccctaaagg cggaattcgc       720
     attgaaggtg gacagtaggg cagtacacaa ggagctgcaa ctaagaaaga agaagactgg       780
     cgaatcctat cacgaatatt gctacaagat gatggagata gcagcacgag cggatgtcga       840
     gacgaaagcg gtgatatagt atattatcgg tattgacgac gaaggttatc gtaagtctgt       900
     tctatatgga gataaaacta ttcgcgaatt aaaagacaaa ctcgatatat acgcagaatt       960
     acatggtaaa acgaagttta agacgggtga aaacaaaaag aaattaccga acacaaacga      1020
     taaagacgcg aagcgagatt cgaaacggtg ttataattgc ggcgataata gtcatttaag      1080
     cgcggcgtgt ccttcgagag agcaaggcac aaaatgtttt gagtgcaata aatatgggca      1140
     catagcagca aaatgtccgg aaaaggcgag tgtagaaaaa aagaagaact gtaaccttgt      1200
     gcaatccgat tctggcaaat gccgtaaaaa tgttgctatt aacggtacga acagaaataa      1260
     acagatcgga tcgccgatgc gcgggaatcg tacgataaag ttccgagggg cgggctcggg      1320
     agaaaataca acgttaggtg aaatacagtt aaaaatatgt atcgacatgg aaatatacga      1380
     tatcgttata catattgttc gcgacgggat aattctacat ggtatgctca ttggatctga      1440
     tttcttaagt caggtgaaag tacacatgaa aaacggtgtt ataaaaattt caaagattac      1500
     acacgattac ggcgaattac cagaaattta taaaattgac gtagtacaag atgcgaataa      1560
     aatagacttg tcacatatta cagacgaatg tgttaagaac gaaatagaat atctagtaaa      1620
     gaagtataaa ccccggaaag aaaaagatgt aaatattcaa atgagcatag tcgtgaaaga      1680
     tgacatccca gtcacgcaga gcgcacgtag attatccgca gtagaaaaag ctgaagtaga      1740
     attacaaatt cgggaatggc tcgacaaagg aatagtacga ccgttgtgtt tggactacgc      1800
     aagtcctata gtattagtaa agaaaaaaaa tggcgcgacg agaatttgtg tagattaccg      1860
     taagctaaac gaaaaagtag ttaagaatcg atatcctctg ccgctgattg aggatcaact      1920
     agatttactt caaggtgcta cattgtacag tacattagat ttggaaaacg gattttttca      1980
     cgtagcaatc gaagaaagca gtcgcaagta tacggctttt gtcgtctcta acggacatta      2040
     tgaattttta aagatgccgt tcggactctg tacatctccg tcctattttc aaaaatatgt      2100
     taacgcagtt ttccgtgact taacggcgaa agaaattata gcaatatata tggacgattt      2160
     aatcatacca gtcaatgtgc aagaagggct ttcgcgactt aaactagtat tagaaacagc      2220
     agcaaaacac ggattatctt ttaattggaa gaaatgtaga ttattagagc cgagagtaaa      2280
     ttatttagga tacgtagtag aagacggtaa aattacacct tcagaagaaa aagctatcgc      2340
     cgtaagacat ttcccaaagc cgattaacat acgcgcggtg caagcgttct taggtcttac      2400
     tggatatttc cgaaagttcg taccaagata ttcacatgta gcacgaccgt tgacagactt      2460
     gttaaaaaaa aatgtaaagt tcgattttgg aaaagaacaa gagcttgcat ttaatcaatt      2520
     aaaacaggct cttagcgata agcctgtatt acatttatat tgtccaacgg cggaaacaga      2580
     gttacataca gacgcatcag ctcttagatt tggcgcaata ctcctacagc gggatagtga      2640
     agacggaatg ttccatccgg tgtatttggc gagtagcaag actacgtcag gcgaagcgaa      2700
     atatgatagt tataaggtag aagtactagc gattgttcga gcgttgcaga aatttagagt      2760
     atatttaatc ggaatctcat ttgcgatagt aaccaattgt aaagcattta cacagaccat      2820
     gaagaaaaag gtcatcagtg cacaagtagc aggatgggca ctctttctag aagatttttg      2880
     atattcgatt gtacatcgcc ccggcaacaa catgcgacac gtagatgcat taagccgata      2940
     cccattgcct gccgccatga taatagaaga atgcgatagc agcattttag taagacttcg      3000
     acgaaatcag ctggaagatg aagaattaaa aggtattgaa aaacaactag aagaaaatcg      3060
     gatagatggc tttacgatgc gaaacggact attatgcaag gagaataatg gcgttgtacc      3120
     aaaattaatg caaacagcgt tgatacgtca ggttcataaa cgtggtcatt ttagaagcac      3180
     aaagacggag caactcctga aagctgacta ctggttcaaa aacatgcatt caaaaattga      3240
     gaaggtgatt cagagttgcc ttgcctgcat catggttaca aagaaaagtg gcaaacaaga      3300
     aggactactt tatccgatta agaaagaagc tccgttagat acttatcata tcgaccattt      3360
     gggaccaatg ccatcgacgc cgaagaaata tcagtatata tttgcagtcg taaatgcttt      3420
     tacgaagttc gtatggctat atctcacaag aagtactagt gcagcaaaag ttttagatca      3480
     cttaatgaag caagcagcta tttttgggaa ccccagaaga atcatttccg accaagggtc      3540
     agcgttcaaa tctggagatt ttaaagcata ctgtaaagac gaaggcattg aacatacttt      3600
     gattgtcacg ggcataccaa gaggaaacgg ccagatcgag cggatcaata gcacattaat      3660
     tccgttgtta accaagctgt cgatgccgca gtcaacccga tggcacacgt ttgttgcacg      3720
     agcgcaacaa tatttaaatc acgtaccaag tcgaagcaca gggataactc cctttcatca      3780
     gctgttcgga gcacgaatga gacttaaaga tgaccctcag attaaggaga ttttggatac      3840
     tgaaaacgct actatttttc aagaagagcg cgaacacatg agagaagaag cacgtgaagc      3900
     aatatccaaa atccaagctg agaacaaacg aacctatgat aaaaagcgga agaaaccaaa      3960
     tacttatcaa gaaaatagtc tagtggctat tcaacggacg caaggtggac caggtttaaa      4020
     gctctgtaca aagtatttag gaccatacaa ggtcaaacgt actctgcgca atgatcatta      4080
     catcgtggaa aagataggcg aaggagaagg tccgcgtaga acctcaacgg ctgttgatca      4140
     catgaagcca tggaccaatt tacaagaaga tccaccagac gatggaaaag acaacatctg      4200
     aggtcagatg ttggtcgga                                                   4219
//
ID   Gypsy-6_SI-LTR repbase;    DNA;    INV; 221 BP.
XX
AC   AEAQ01015719;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SI_;
KW   Gypsy-6_SI-I; Gypsy-6_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-221
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01015719; Positions      26     246.
XX
SQ   Sequence 221 BP; 58 A; 39 C; 64 G; 60 T; 0 other;
     tgtatgtatt gtaggatcgg agtttagata gcgttttagt tttgtgttgc gttagatacg        60
     tagttagttt ttattttcgt tatagcagaa gcaattaggc gcacggtgat ttcgatgcga       120
     gcgcccgtaa agacattcgg cgcgaacgcc cgtaaagaca ttcggcgcga ttcggcaaag       180
     ttcggcgcgc aacgtgaaaa agaggaagac tcacggagac a                           221
//
ID   Gypsy-6_SiCu-I repbase;    DNA;    INV; 5066 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5066
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4969-4969 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..5012
FT                 /product="Gypsy-6_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDYISYAIVAIPVVAVMLLHYVYIILNYLFEYVCDMV
FT                 NPRPPPPPPSLDPSSGPQDSKRVQKKLQTLSEELQKIQRDLTSGLDDLRRQ
FT                 LDADTGNISGEFHTFEERLEALTNDYSSLRQNITRMEDFPQLNNSVQQHLQ
FT                 RYEIDFHKYTSQLEALQQQMTADENKLSSLETLHTAHNNNFQQHLRHYQLN
FT                 RRQDAAEFQSITEFQNGVEDFLSGERLSRPFVEKLTKIVASRLEHISRHFQ
FT                 IPLSLTDQHSGGQHPHNNSTELPSPILKCSFSKPSFAGASQHLSAPPPRFH
FT                 PELDIAEFFLEELEKYMSDHQIPSSDRINYLTQVFGKDKELGLWWQRTRLQ
FT                 VDNWDKFVQHFLKMYGTTSNYTTALEKLLNRRQNPNESFGKFAMEMELQYL
FT                 KLHRHQANNIDTKTILTFISERALPSLMPHLLGCPAADIYELIQYADKIQS
FT                 TTQLQRVPSTLPPHASATDHKQRNTGSSGNWRQPDSNSSKFRRPNPPFAST
FT                 GKRNESRPPQDTINTVAITVDPSQLTVNPPTSQLESDDESDMGSLVIYNRT
FT                 HNKNYSLPTIPCNLAVCNSDQNTKSFVRGKCLFDCGANVSILGDPRLWKSA
FT                 TVKSWNRGPVKLADGTLTTPQGRMKYRFKIGNKSFHHTFGLLPDSEFSMLL
FT                 GLDFLCNSGMQIDFGCMHFWFKDNPHHKFTFDITSSDCNLRALHTLDEWQK
FT                 KQIAALLKKFEAVVDPPTIGRTHVLQHEVNLTTDKPKHIRPFPVSEEKHKV
FT                 INNIVSDMLRQGLIRESSSSYSSPVILRPKPNGDWRLVNDFRYVNDLTVPD
FT                 GFPMRKIDDVLRLLGNAKYMSTIDLEKGFWQVPVREQDKKYTAFRTRTGLY
FT                 EYNVMPQGMKNSPATFQRLMNKVLRGMEAFVFVYQDDILIFSTSFDDHLAH
FT                 IHMVLQRLHAAKLSIKSSKCLFGRDKVKFLGHIFSTKGIEKNPEKVQAILA
FT                 LGPPRTRKQLRKFLGALGWFRHFLPHLATTASPLYKLLSTKTKFLWNAAAH
FT                 TSFQDLKQALANDVTLQHPNFSKPFIVRTDGADAGVGCVLLQHDENGHERP
FT                 VAFASKALNDAQKNYSAIEKECYAIIFALERFAEYLDGNQFRIETDNQAIT
FT                 YLYKMKNSNSRIQRWAWKLQEWCPSITHISGVDNPVADYLSRYFDPIPDPE
FT                 EECQINAISLKPDFDLTTLQLEQESDSDCQQHLQAFPTQFRKDNGIIYKVD
FT                 KNNKHLPFIPSALRPSILESLHDSALAGHMGITKTLQRLQDRVYFPYMREH
FT                 VTNYIKTCDICQRHKYDHQTKPGLMGTKPIRRPWHTLYLDLMGPFPPSSPH
FT                 RNSYVLVIVDGFSKFTEIHPIKDATSKLIGDVLERNIFTRYGPPKTIVSDN
FT                 ATTFRSGIFKTLCESWGIRHAFTSAYHPQTNLSERVNRVVKPLIRSFLDQQ
FT                 PHTKWADNIHYIQFAVNSSKHESTGYTPYRIMFNSDPRFPIDNSLTADTID
FT                 NPGDSNISLCSRFNEFQTILNDVQRHLQTSQLRQKSNYDKHHRAVTFQVGD
FT                 KVVIRNTTQSSKEKKISAGLCPLYNPGAATVSKVLSDLTYEVTLPDGSIRG
FT                 PLHIQMLRPYHQRHNQDHAEALQPIPQSSLSSQAPTTSSPSPPVHALRPRV
FT                 PVNYRNLHLGYPQNS"
XX
SQ   Sequence 5066 BP; 1548 A; 1341 C; 934 G; 1243 T; 0 other;
     aatggtgccg aaaccctttc gtttgtgtta aagcaacgct acctacctaa atggtcaacc        60
     cataatcagc ctcctccgga caaaccaacg gagaaactgg atatctactt acaatggatt       120
     acataagtta tgccattgtt gccattcctg tcgtagctgt gatgctactt cattatgtat       180
     atataatact taattatctt tttgaatatg tttgcgatat ggtcaaccca cgtcctcctc       240
     ctccaccccc atctttggat ccgtccagcg gtccacagga ttccaagagg gttcaaaaga       300
     aactacaaac actttccgaa gagctgcaga aaatacaacg cgacctgaca agcggattgg       360
     atgatctccg acgccaactc gacgccgaca caggcaacat ttcaggggag ttccatacct       420
     ttgaggaacg cttggaagcc ctcacaaatg actacagctc gttgcgtcaa aacatcacta       480
     gaatggagga ttttcctcaa ctcaacaatt ctgtccagca gcacctccaa cgctacgaaa       540
     ttgacttcca taagtacaca tcccaattgg aagctctaca acaacagatg acggccgatg       600
     aaaacaaatt gtcaagcttg gagacactac acacggctca caacaacaat ttccagcaac       660
     acctgcgaca ttatcaactc aacagacgcc aggacgccgc cgaatttcaa agcataacag       720
     agttccaaaa tggggtagaa gatttcctaa gcggggaacg attaagcagg ccgttcgttg       780
     aaaaattaac caaaatcgtt gctagccgcc ttgaacacat aagcagacat tttcaaatac       840
     ccctgtcgtt aactgaccaa cactccggtg gacaacatcc tcacaacaac tctacagaac       900
     taccatcgcc cattttaaaa tgcagttttt ccaagccttc ctttgccggc gcttcacagc       960
     acttatcagc cccgccacca cgctttcatc cagagttaga tattgccgag ttctttctcg      1020
     aagagcttga aaaatatatg agcgatcacc aaattccgtc ttcagacaga attaactact      1080
     taacacaagt ttttggcaaa gataaggaac ttggattatg gtggcaacgc acgagattac      1140
     aggttgataa ctgggacaaa ttcgtacaac actttctaaa aatgtacggc acgacatcga      1200
     actacaccac cgctctggag aaacttttaa atagaaggca aaatccaaac gaatcattcg      1260
     gaaaatttgc aatggaaatg gaattgcaat atctcaaatt gcacagacat caggccaata      1320
     acatcgacac caaaaccatc cttacattca tttctgagcg agcccttccg tctctcatgc      1380
     cacacttatt aggatgccca gccgccgaca tttatgaatt aatccagtat gcggacaaaa      1440
     tccaaagcac aactcaactc caacgagtac cttccacctt gcctccacat gcttcagcaa      1500
     ccgaccacaa gcaaaggaac accggctcgt ccggaaattg gcgacagccg gactcaaatt      1560
     ctagcaaatt ccgtcgaccc aatccacctt tcgcctctac tggaaaacgc aatgagagtc      1620
     gacctccaca ggacactata aacacagtgg caattaccgt tgacccctca caacttacag      1680
     tcaacccacc tacgtcccaa ttagaatctg acgacgaaag tgacatgggc tccttggtaa      1740
     tttacaaccg aactcataac aaaaattact ctttgccaac aataccttgt aacttagctg      1800
     tctgcaatag tgatcaaaat acaaagtctt ttgtacgggg aaaatgtcta tttgactgtg      1860
     gtgctaatgt gtccatttta ggagatccca gactttggaa atccgcaaca gttaaatcct      1920
     ggaatcgcgg gcctgtcaaa cttgcagacg ggacactaac gacgcctcag ggacggatga      1980
     aataccgatt caaaattgga aataaatctt ttcatcacac atttggtctt ctacctgatt      2040
     cggaattttc aatgctactt ggactagact ttttgtgtaa tagtggtatg caaatcgatt      2100
     ttggctgtat gcatttttgg ttcaaagata atccccatca caagttcaca tttgacatta      2160
     cctcttctga ctgcaatctt agagccctgc acacactaga cgaatggcaa aagaaacaaa      2220
     ttgcagctct attaaagaaa tttgaagcag tcgttgatcc ccccactata ggacgcaccc      2280
     atgttctcca gcacgaagtt aacttaacca cagacaaacc gaaacatatc cggccgtttc      2340
     cagtatccga ggagaaacat aaagttatta ataacatcgt cagcgacatg ctccggcaag      2400
     gattaattag ggaatcatcc tcctcctact cctctcctgt cattctgagg ccaaaaccaa      2460
     atggagactg gaggttagta aatgattttc gatatgtgaa tgatttaact gtccctgatg      2520
     gttttcctat gcggaaaata gacgatgtat tacgattgct cggtaacgct aaatatatgt      2580
     ccaccattga tctcgagaaa ggcttctggc aagtacccgt acgtgaacaa gacaaaaagt      2640
     acactgcatt cagaacaagg acaggactgt atgaatacaa cgtcatgcca cagggcatga      2700
     aaaacagccc tgccacattt cagcgcctta tgaataaggt cctgcgcgga atggaagcct      2760
     tcgtctttgt ctaccaggac gatattttga ttttctccac cagctttgac gatcatcttg      2820
     ctcatatcca tatggttctc caacgtcttc acgcagccaa actatcaatt aagtcatcca      2880
     aatgtttgtt cggccgcgac aaggttaaat tccttgggca tattttctcc acaaaaggaa      2940
     tcgagaaaaa tcccgagaaa gttcaagcta ttcttgccct gggtccacct cgaaccagaa      3000
     agcaattacg taaattcctt ggagcacttg gctggtttcg ccatttcctc ccacatctgg      3060
     caaccacagc ctcacctctt tacaaattgc taagcacaaa aacaaaattt ctctggaacg      3120
     ctgcagctca cacgtcgttt caggatctga aacaggctct ggcaaatgat gttaccttgc      3180
     aacaccctaa tttcagtaaa cccttcattg tgcgcactga cggtgctgac gctggagttg      3240
     gatgcgtctt gctacaacac gacgagaacg ggcacgaaag accagtcgca tttgccagca      3300
     aagcgttgaa tgacgcacag aaaaactact ccgcaataga gaaggaatgc tatgcgatca      3360
     tttttgcatt ggaacgcttc gctgaatacc tagatggaaa tcaattccgc attgagactg      3420
     ataaccaagc cataacctat ttgtacaaaa tgaagaactc caactcccgc attcaacgat      3480
     gggcctggaa gctccaagaa tggtgcccat caataacgca tatcagtgga gtggataatc      3540
     ctgtggctga ttacttatca cgatatttcg acccaattcc ggacccggaa gaggaatgcc      3600
     agatcaatgc catctcgtta aaacccgatt ttgacctgac cactctccaa cttgaacaag      3660
     agtcggactc cgattgccaa caacatcttc aggcattccc cacccagttc cggaaggaca      3720
     atggaatcat ttacaaagtg gacaagaata ataaacactt gccttttatc ccatcagctt      3780
     tacgcccatc tattcttgag tcattacatg attccgcatt agcaggccac atgggtatca      3840
     caaaaaccct acaacggctt caagaccgag tatattttcc atacatgcgg gaacatgtaa      3900
     ccaattacat aaaaacatgc gatatctgcc aacgtcataa atatgaccac caaacaaaac      3960
     ctgggctcat ggggacaaaa ccaattcgac ggccgtggca tacattatac ttggatctga      4020
     tgggaccatt tcccccttcc tcaccacacc gcaacagcta cgttctagta attgtggatg      4080
     gatttagtaa attcaccgaa atacacccca tcaaagacgc tacttctaaa ctcattggag      4140
     atgttttgga acgtaacatc tttacccggt atgggccacc gaaaaccatc gtcagtgata      4200
     acgccaccac cttccggtct ggaattttca aaactttatg cgaaagctgg ggcattcgac      4260
     acgcgttcac gtcagcctac catccacaaa caaacctctc agagcgagtt aaccgtgttg      4320
     tcaagccatt gatacgttcc tttctcgacc aacaacctca tacgaaatgg gcggacaaca      4380
     tacactacat ccaatttgca gtcaactcct ccaagcacga gagcaccggc tacactccat      4440
     accgcataat gttcaacagc gaccctcgat tccctattga caattcactg actgctgata      4500
     ctattgataa cccgggcgac tctaatattt ctctttgttc tcgttttaat gaatttcaga      4560
     ctattctgaa cgatgtccag cgccacctac aaacctctca actcaggcag aagagcaatt      4620
     atgacaaaca ccatcgtgcc gtcaccttcc aagttggaga taaagttgtt atccgcaaca      4680
     ccacccaatc cagcaaggag aagaagataa gtgcagggtt atgcccgtta tacaacccag      4740
     gagcagcaac cgtttcaaag gtgttgtcgg accttacata tgaagttacc ttaccagacg      4800
     ggtcaattcg gggtccctta catatacaaa tgttgcgtcc ttatcaccag agacacaacc      4860
     aggatcacgc cgaggctctt caacctatcc cacaatcatc tctatcttct caagctccta      4920
     cgaccagttc tccatcaccg cctgtgcacg cgctccgtcc tagggttcca gtgaattata      4980
     ggaacctcca tctcggatat ccacaaaatt catagcgaca attccaccgt tataattcgc      5040
     cgaattgccg tttcgcaggg ggaatt                                           5066
//
ID   Gypsy-6_SiCu-LTR repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-392
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5084-5084 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 392 BP; 137 A; 85 C; 53 G; 117 T; 0 other;
     tgtaacctac tattccttgc tcacaacatg aaacattcat tcgttcacaa gtcatagagg        60
     atatctaaat tggtacatca tccaaacatc ttttccttcg tcccatgagg cagagaagat       120
     ctggactcag gattgagagg tgaaaaatct cacctccctt ctctcacaaa atttataatt       180
     ataattcagt taaatctgta gtatagttaa attgatacta aacctaaacc tacctattct       240
     ataccctatt aaccaaagtt atgtcgacat tagttgatta atataaataa atattaactt       300
     cagttaacaa aatattgctc tcccacacta tttatttggc acgaacaggg acagtgacaa       360
     gaaaacgccc atctcggcaa gtgaacgtca ca                                     392
//
ID   Gypsy-6_SiOr-I repbase;    DNA;    INV; 7383 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-7383
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 343-343 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 7383 BP; 2209 A; 1108 C; 1196 G; 2870 T; 0 other;
     aaatagcgtc caacgatgtg gggccttgag aatttaaatt aaaaaaaata aaattgtttt        60
     acatcttgat tttttttacg tctttataat ttggtttatt atttttgctg agataaacta       120
     gactatttaa tattaacttt gcctaaaacg tatctatttt tatctattca gttctggact       180
     ttaatttcat atttttcctt ttgcaaaaac aggtatattg tattttttcc tcggtatctg       240
     gtactatttt tctatatttt ttggtatggt atagctgtga tctaagttat tctgacggtg       300
     aaattgctgt ggtttttttc ttttctctat ttctatttct agttttttct gtctatattc       360
     tgtctatttt tctatatata aaatctgcat aaaattatca attacaaatt gtttatctaa       420
     aattttaact aaatttatag atattttcat cgcgtgttgt ttaccagttt tttatttcat       480
     accaaatagt tttttttata ttgacataga aattcttttt ctccgacgta ttttaacatt       540
     cgtagtttta tcgattctat ttagattatt ttcctgaata ttttttgaac agtatacagg       600
     gtggtcaaat aaaaaaaaat tatttcaagt cattttgttt ttgtaattga tttatttatt       660
     ttttaatttt aactaatact tatttagaat ttacatttgt aaaatttatt cagtaattat       720
     ggatttagaa aagtttagag ttaatcattt gttggattat gagttggagt atgagttaaa       780
     tattcgattt gtttatactg aaaggggcgt tgatgataaa agaaagatgc tttcgaaact       840
     tttaaagaaa gaactaaaca atccaggttc tcaaattaat atggacagtt ataaagttga       900
     ttttatgacg gaacaaactg aaattaataa aagtttatct tctattacaa gtttaatttc       960
     tgattttgag ggtagttctg cagatagtac atttttaaga gtaaaatcta gattagctca      1020
     tttatctggt cgtgtaagac ggatagtaat ttcaaagcct aatgaggagg aaattattaa      1080
     atttaaaaat gaatcgtatg ctacttgttt aaagttagaa tccgatttag atgaaaaaac      1140
     agtttcaatc tctaatactc aaaatctgaa tgatagtttt gaacataatt ctgttgctcc      1200
     tatagtcaat gttagtccgg tagtttcttg ttccgctaat aaacaaccaa tttcatcttg      1260
     gggtataaaa tttaatggcg attcgaaaag cgtttattat tttttagaaa gagtatctga      1320
     tttagctcaa agccgtaatt tttccgaaat agaattattt aactcagctg ttgaattttt      1380
     tataggcgat gcttttgttt ggtatcgtag tgtaagatcc attgttactg attggcaagg      1440
     tttagttaaa agattaaaga acgatttttt acctccgtgt gcagatgacg acatctggga      1500
     acagataaga cagagaaagc agaaaagaaa tgaatctata actattttta ttgctcattt      1560
     agagaactta ttttctcgtt tatctttacc tccagccgaa attactaagg ttaagtatat      1620
     tcgtaaaaat ttattacctg aatatattaa tcagttagct ttgcatactg cagatagtgt      1680
     taatgacttg tctattttgt gtaaaagatt ggaagaagtc gtacagttaa cttctcaatc      1740
     tgtttctaag aaaaattcgc atttatctta tttggacgac tcacagccta gtacttctac      1800
     ctctgtatat aaaaagcagt ttcatgatcg aaaaaacgta tctacctcta acaaaaattc      1860
     ttttaaaaat aacgttcaga aatctactga aaattctaag gactctaaat ctaagataat      1920
     ttgtttcaat tgtaatttac ctaatcatac gtacaattct tgtagagaaa aacgtaagtt      1980
     attttgtttt cgttgtggcg agcctaatgt taaagtttca aattgtagta aatgttcaaa      2040
     aaactagtta aatcaccagt cattgcaagt ggtcgattgc ttggtgatgg ttcaaccact      2100
     aaaagttact ttaatatttt tgagtggaga aaatggctta aacatgtttc aaatttttat      2160
     aaaacaccat ttcataataa cgaaattcta ccattgtttt ctaaaaaagt taatgataat      2220
     agaccttata tatcagtacg tctttttgac agggatataa ctgtattact tgactccggt      2280
     gccactacct ctatcattgg aaatgagggt ttaaagtttt taaataagtt aaaaataaaa      2340
     gttcatccta tccaacattc taatctttat accgcagatg gcaaggaaca aaaagtaata      2400
     gggttagttg acttacctat ttctattggt acttgtttta gactgattaa agctcttgta      2460
     gttccttctg taactcattc ttttattttt ggtatggatt ttgttaaatc atttaacttg      2520
     attatgaatt ttaaaaacaa tagttatctt attcagaatg attctattaa actagatata      2580
     gtggagccat tttctaacag ttcttttagt tctaacttgt tttctctaga tgacttatct      2640
     ccttttgaaa aaaatgaagc ttttaaagta ttagaattat ttaagcagat tgatagtgat      2700
     aaaaaattag gccgcacaaa taaaattaag ttaactatag atacaggaga taatcaacct      2760
     tttaaaaaga aaccttactt actttctccg tacatgcagg acattttaaa taaagaatta      2820
     gattctatgc ttgagttagg tgtagtcgaa gagtctaata gtccttggtc ttctcctacc      2880
     ttattagtta aaaaatctaa tggagagtat agattttgtt ttgatggacg atttctgaac      2940
     gctattacta aacatgacag ttttccttta ccgcacgtag atcgtattct atgtaactta      3000
     cgtaatgcta aatttatctc atctattgat cttcgtaaag cattttggca gattcctcta      3060
     gacgaggcat ctaaagaaaa aactgctttc tctattattg gtcgtggtca ttatcagttt      3120
     aatgtcgtac ctttcggttt gtgtaatgcc gctcagactc agcaacgtct tgtagactcc      3180
     atatttggtc ctaaatatga acctcatatt ttttcttacc ttgatgatat tttgatttgc      3240
     tctcctactt ttgaacatca tatagaactt ttaaaaacag tacaaaaatt gcttaaggaa      3300
     gctggattaa ctattaatct tgaaaaatgt aatttcttta aaaccacatt aaaatattta      3360
     ggttttatag tgggtaataa ctctttagct accgatcctg caaaagttga atcgatgacg      3420
     aattatcctc gtcctcagac ttctactgaa gtcaagagat ttatcggtat gtgttcttgg      3480
     tatagacgtt ttattaaaga tttttcttct cttgttaatc cacttaatgc tctccttaaa      3540
     ggtaaaaaga aaaagcaaac aatatcatgg aatgacgatg ctgaggctgc ttttctggct      3600
     ataaaacaaa aacttgttag tgctccagtc ttatctcaac cagatttctc tcaaaagttt      3660
     tttgttcaat ctgatgcttc tgatgtcgga atcggtggta tgcttacaca atttatagat      3720
     ggtgaagaga gggtgattgc ttatgcaagc cgttcacttt ctaaagcaga aagaaattat      3780
     tcggtaactg aacgtgagtg tttggcagtt atattctgca tagaaaagtt tagaccttgg      3840
     attgaaggta ctcctttcac agtcattacc gatcattata gtctgctttg gctcaataac      3900
     ttaaaaaact ccttccggta agctcagtcg atggttactt aggttgcgtc agcatacttt      3960
     tgatttgcaa catagaaaag gttctatgca tttagttcca gatgcgttaa gtcgtattcc      4020
     ttattcttct cccgatatca atctacctga ggctaaatta tttttattat ctacagataa      4080
     cagttctctt gatccatggt acatttcatt acgtgataaa attcagaacg agccggataa      4140
     atatccacaa tggcgcgtaa aaaacgaaaa agtatataaa ttcatttcat caaataaatc      4200
     tcatattttt aacaaaagag aatggaaaat tttagtgcct aaatgtcaac gtaacaaagt      4260
     tattgattct tgtcatatac ctccaactag tgcacatttt ggtttccgta aaactttgta      4320
     tcgagtacaa gaaacgtatt attggccaaa tatgagatca gatattttga aatttattag      4380
     aaaatgttta gtttgcggtg cgcaaaaatg ttcaaatttg cctaaaatcg gtaccatggg      4440
     taaagaaaaa attgttgatt tacctggtca gattctttct ttagattttg tcggtccgtt      4500
     tccgcgttct aaaaaaggta ataaatggtt gctagtagca gctgattggt tttctaaata      4560
     cacttacata tttcctttga agcattctaa atcaaataat attgtagata ctattgaaaa      4620
     caacatattt ctgatatttg gtgttcctca aatattaata actgataacg ctccaaattt      4680
     tgctagtaat aatcttaaag gtctttgtga aaaatataaa gttaaacagt ggtttactcc      4740
     ctattattca ccacaatgta attttgtcga aaggaataat aaaaccataa ctactgctat      4800
     cagatgttat attgataaac atgaagattg ggatttacac atacctcaga ttagacaagc      4860
     tattaatact gcagttcatg aagtgacagg ttttccgcca acttatttga tgttcggtag      4920
     acatgttcct atatctggcg aatattacga ttttagtatt aacgaccaat ctgtagaaat      4980
     attgcctggt gatagaaata cttatgctga gaatttgaca gagtttagaa agttattcgt      5040
     tgagatacgt aacaagttgc attctgcata tgaaagaaat ttaaaatctt acaatctccg      5100
     gaaacgggat gtttctttca acgtaggtga taaagtgtgg cgtgttaata aggttttatc      5160
     taatgccgcc gacaagtttg cagctaagct cagtcctaag tatattttgt caatagtttg      5220
     caaaaagctc tctcatttag tttacgagtt aaaaaataca gatggttcta aagccgggaa      5280
     atggcatgtc aaagacttat taccttatca cgatcttgac gattcgtcag atgaacaaga      5340
     ttaatatttt cattttctta tttcaattta tcttttctta agctttacct atattttaat      5400
     tacctaaatt ttctaatttc tctttagcat gttttttgtt acacttaatt aactgtttta      5460
     tacttacctt accttcgaaa aaatttacct cttacttcta gcaaaatatc tctaggatat      5520
     ttacattttt atctgtaact ttatctttac tatctgtatt atgagttatc tgtattttac      5580
     ttctagtgtt gctaaaagag tgaattctct tttccatttg aaaacttaaa agttttttaa      5640
     ttatctgaaa gtaaaattta tcttatcttt ttctttattt ttttttgtat cttaccttat      5700
     aaaagaaatt ttcttttatt attttgctga tttgactcct acaaagtgta gttagttatt      5760
     cagtaacaag cgatttaagc tgttatatta ttttatctta cctttaactt accttttcac      5820
     ttgaaagtac agtgattatc ttacctttag tatttttatc ttacctttac cttaccttac      5880
     ttattttttt atcttacctt accttagact atttcaaact gagcttggtg gtgcaaattt      5940
     gtaagtatta ttgcagatgt gactatagaa tggcatacac gttgaataat ggagtttata      6000
     gttgttatag gatttcttgt caccagagca atatttttgt tttacaagca aatttcatta      6060
     agtcagttga tttagatcta gctatcttac ctttgttttt ttataccttc gtttgagtgt      6120
     tttatgggtg gtaatactca ttatataacg tacctaggac gttttgtttt tctcttgtga      6180
     attaggccgg atgacgatgg tgtcagtagc ttccggactt gtagtcacaa actgctagcg      6240
     tggaaggatt cgtattgggg ggtgtttatt tggctacaga catttcgatg tactgaggaa      6300
     tagttgggtg acactactgt gcgcaatctc agttccctag tgggcaagtc cgagggtact      6360
     gctgacaact tggccatacg agtacctact aagtttaatt gatttcctag tgccatttct      6420
     atggttttca gtttggtgga aactatattt cactccctct tgattgtgga acatttgggt      6480
     tacctttctc tctctctttc tcttcctttt tttttttgtt tttttgtttt ccaccttgga      6540
     catagcattt ttttggtttg ggttgcggaa ttgtgttcgg ggaagtgcct gcctttgtgg      6600
     aagatctact cgaggttagt aatcgagggg actttctaca gatgaatgtc gcgcagtact      6660
     agcttggatt tcacttatca tctccagagt agatttattt aaattactcc gaaatccaga      6720
     ccgcttagat ctttgacatt ggttggtttt cttcgagtgc tcttcggttt atccttgctg      6780
     gggaagtgtt ctgtccaagt atcttttgtt tgtgttcgta ttttttgtcg aaacattttt      6840
     tgtttctatg gtattaccaa agcggtaatt tgtttttttt acataagttt tcactattct      6900
     cttggaatag cggtttctta tattacctct agccttcagg cttactttat aactcatagt      6960
     tgtagttttg tgttatccag ttttttagta gacttaccga ttttgactta acccgatttt      7020
     aacttaaccc gattttgacc tatctatttt gactccttgg tggacgagtg atacgcgtag      7080
     ctatcgaagc taaaataact gaatgactac tgaatattgt ttttattttt ctttctttaa      7140
     gctattatca ttggataatg gtttctttcg taatttagga tttttcttta atcagtagtt      7200
     cctatagtct ttagtacagt agttatctaa agctctttct tggtttgttt tattttctca      7260
     ccatttattt ttgatgatgt ttcttggtgg attgtttgaa taatgatcta ggtgaacatt      7320
     ttgttctcat aaaaaattta aagtctgtac agcctttaat tttttctttt tggagagagg      7380
     caa                                                                    7383
//
ID   Gypsy-6_SiOr-LTR repbase;    DNA;    INV; 1244 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1244
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 331-331 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1244 BP; 364 A; 209 C; 182 G; 488 T; 1 other;
     tgtagcattt tatttaaaat tcacacaatt taaataaatg tacagaatta ttttatttaa        60
     acaattcaag tttgagtcct cgcaccgaga tggcattcta agtattgtta ttatctttta       120
     ttttttctac aagtttattt ctggctagtt atttcagtcc ggtcgaagtt gttcgtcact       180
     ttatttctga cggtataggt atatacctcg tgcctacctt tatcgctata ttggtggttg       240
     aagctgaacc cgatagaatt atcggcgttt tttttggcat ttttgaaatt tgtgtgggaa       300
     aaccctctga gcggaggtaa gacctttatt ttttttacat aacgtttcct aatacctttt       360
     ttctatttgt acagggtttt attttatggt acgcatttct ggtgccattt tgtttattgt       420
     atctgacatt tgggccacgt ttgtccctac aatatacacg ttgaataacg gaggaatctc       480
     ctgaatatac agcattttcc gatcctgtct gkgtggagac gttttaatca cgatccagtt       540
     ccagcagttc accacaacca gcttgtgacc agaacggata taaaaggcca gatcatttct       600
     ttttatataa tttaagttca ctttaatgct tcaagccctt caggcatatt agatatttta       660
     ttactttaga gtcactttga aatattttat tcatgttatg catatttctg atatatacat       720
     agtacggttt tttttaatat aaagagtccc tatattttgg taccaagatc gccagacttt       780
     ttgcggaata attaataaaa tattaatatt cagaagcgtg cagatttaac taccatcttg       840
     agtgatctat tttaatacat actatttacc aaccaacatt ttcaaacatc aaattattca       900
     tagtcttatt ttattctaat taacatttaa ttattaatta tacttagttg ttagtttatc       960
     tcagcgtttc atttgtgtaa ttcctaaaat aagtaatacc tatattctga gttgatttct      1020
     cagttctcaa cttagaagtt tttgaaagta aatggaaaac tgagtggcgc ccagtatatt      1080
     ataaagacgt aattatcaca atttaatttt cactagctta cgacccattg ctcaccggcg      1140
     aacagctccg tcgcatagta ttagttgttt taatattttt tctaaaagaa aattcttata      1200
     aaaaaaaaca ttccatcatt ttttttataa cttctaatgc taca                       1244
//
ID   Gypsy-6_SpEx-I repbase;    DNA;    INV; 4144 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4144
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4079-4079 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           73..912
FT                 /product="Gypsy-6_SpEx-I_1p"
FT                 /translation="MANIEEFSDAHGVTTVKSDVATISLPARLPPFWRQNP
FT                 RLWFAQFEAAVAASKIGEEQKFNLVVPLLGNNDLEQIADIILNPPASGKYS
FT                 TLKERLISTYQESDHRQLQKLLSGLELGDQKPSQLLRKMRDLSGKLLSDEA
FT                 LKVMWLNQLPAQIRAVLSVNTESSLEMLAAMADKMMEHFEPASINAVSTTT
FT                 ACQETLQISLLSKQIEKLSLEIADLRTNQQSYRYSPRFTHRNRSRSHSRSR
FT                 HHTHNNIKPGDPNWVCRYHYRFGDQARKCESPCSKKREN"
FT   CDS           810..4040
FT                 /product="Gypsy-6_SpEx-I_2p"
FT                 /translation="QHQARRPELGVSLPLPIRRPSTQMRIAVFKKAGKLES
FT                 TSTLAGVDVNQTSRRLCIIDINLREKFLVDTGADISVLSARNKKHIKPAKT
FT                 SYKLFAANGTEIRTYGERTLELNLGLRRRFRWTFVVADVNTSILGADFLVH
FT                 HQLLVDLHQRKLIDRITELSVNAIKINGTEQDTVYMVNRDHAYHDLLKKYP
FT                 DVLRPMSLKTPVKHDVTHHIETTGPPIYSRARPLPPDRYKAAKLEFERMIE
FT                 MGICRPSNSPWASPLHVVKKKDGSLRVCGDYRRLNAVTVPDRYPIPRIQDF
FT                 TYQLHGKKIFSKLDLKMAYFWIPIAKEDAQKTAIITPFGLFEFNCMTFGLR
FT                 NSGQTFQRFMHEVLRGLDDIVFCFVDDLLVHSKNQDEHRRHIEIVLERLNT
FT                 YGVSLNIDKCEFDKQNIEFLGYEVSPEGIKPTQDRIQAIVNYPKPQTIQDL
FT                 RRFLGMINFYRSCLPHQAEYQHELNKYLHNTKKKDKTPITWTPEAELAFEK
FT                 CRQSILDATTLTHPIHSAPLRLYTDASNTSIGAVLQQQVDNVWKPLAFFSK
FT                 TMSETQRRYSVYDRELLAMYISVKHLRRLIEGNDLTIYTDHKPLTYALTRS
FT                 PSTSDTSRRERQLHFISQFCSNIKYVHGDNNEAADALSRIEEIDLTETSID
FT                 YNQLAQDQENDSELQRYMSHPNLQFTSISLPGGQRPLICETSTGNIRPYLP
FT                 AKYRFVAFKAQHDLSHPGVRTTRKIISTKFFWPNMNKEVGTWARTCIGCQR
FT                 AKVQRHTISPLGEFGKSQRFEHIHVDIVGPLPPSNDYRYLVTMIDRCTKWP
FT                 EAIPVRDITADTIAKAIYDGWISRFGCPLRLTTDQGRQFESSLFKALMKKC
FT                 GINRIRTTAFHPQANGQVERWHRTLKSALMARCARTNWSDELSTVLLGLRT
FT                 ALRQDNEVSPALMTYGSTLRVPSDFFVPTQPNIDDAEFVRQLTETMSTLSP
FT                 NSKPHSNSTRSFVHKDLATCTHVFVRNDTVRSPLVPPYDGPYKVLRRDSKH
FT                 FTIQMYPRTAVISIDRLKPAYLLNEDDTISTSVTRQQQDKIPTTTSRQQQD
FT                 YVPTAICARTNIDLSTYNYK"
XX
SQ   Sequence 4144 BP; 1310 A; 1198 C; 833 G; 803 T; 0 other;
     ttggtgaccc tcctgaagaa aaagaacact aaataacatc aagaaggaaa atccctgcaa        60
     gtcagaagaa tcatggcaaa catcgaagaa ttcagcgacg cccacggcgt aacgacagtg       120
     aagagcgacg tggcgacaat atccctgccc gctagattgc caccattttg gcgccaaaat       180
     ccacgcctat ggtttgcgca attcgaggca gctgtcgccg ccagcaaaat aggagaggag       240
     cagaaattca acctcgtcgt accattgctc ggcaacaacg acctggaaca gatcgccgac       300
     atcatcttaa accccccagc gtccggcaag tacagcacac taaaagaacg gctgatctcc       360
     acgtatcaag agtctgacca tcgccagcta cagaaactgc tgagtggtct cgagctcggc       420
     gaccaaaaac cgagccagct actccgcaag atgcgtgacc tcagcggcaa actcctgtcc       480
     gacgaggcac ttaaagtaat gtggctaaat caactgccag ctcaaatacg cgccgtactc       540
     tccgtcaaca cagagtcatc actcgagatg ctagccgcaa tggctgacaa aatgatggag       600
     cacttcgagc cagcttccat caacgcagtc tccacaacaa cagcgtgtca agagacccta       660
     caaatctcct tactgtcgaa gcaaatcgag aagctgtctc tcgaaatcgc cgacctccgc       720
     accaaccagc aaagttaccg atattccccg cgcttcacac accgcaaccg ttcacgctcc       780
     cattcaagat ccagacatca cacgcataac aacatcaagc ccggcgaccc gaattgggtg       840
     tgtcgctacc attaccgatt cggcgaccaa gcacgcaaat gcgaatcgcc gtgttcaaaa       900
     aagcgggaaa actagaaagt acatcgacgt tggcgggcgt cgatgtaaac caaaccagcc       960
     gccgcctatg tatcatcgac atcaacctcc gagagaaatt tcttgttgac acgggagcag      1020
     acatatcagt cctatctgca agaaataaaa aacatatcaa gccggcgaag acctcataca      1080
     aactgttcgc ggccaacggc accgaaattc gtacctacgg agagcgcaca ctcgagctca      1140
     acctaggctt acgaagacga ttcaggtgga cattcgtcgt ggccgacgta aacacatcta      1200
     tactgggcgc agacttccta gtacatcacc aactactagt cgacctgcat caaagaaaac      1260
     tcatagaccg catcaccgaa cttagcgtaa acgcgatcaa gatcaacggc accgagcaag      1320
     acaccgtcta catggtcaac cgcgatcacg cttatcacga cctactaaag aaatatcccg      1380
     atgttctgcg acctatgtca ttgaagactc ctgtgaaaca tgacgtcaca catcacatcg      1440
     agacaaccgg accgcctata tactcacgag cgcgacccct accgcccgac agatacaagg      1500
     cggcaaaact tgagttcgag cgcatgatcg agatgggtat ctgccgaccc tctaacagtc      1560
     cttgggcgag tccactgcac gtcgtcaaga agaaagacgg ttcacttcga gtctgcggcg      1620
     actacagaag actaaacgct gttacagtac ccgatcgcta ccctatacct cgaatacaag      1680
     actttaccta ccaacttcac ggcaagaaaa tattctcgaa actcgacctc aagatggcat      1740
     acttctggat acctatcgct aaagaagacg cacagaaaac agcaatcata actccgtttg      1800
     gcctcttcga attcaactgc atgacattcg gcctaagaaa ctcaggacaa acctttcaac      1860
     gatttatgca cgaagtacta cgaggactcg acgacatagt gttttgtttc gtcgacgatc      1920
     tacttgtgca ctcgaaaaat caagatgaac atcgacgtca catcgaaata gtactcgaac      1980
     gcctaaatac ctacggcgtc agtctaaaca tcgataagtg cgagttcgac aaacaaaaca      2040
     tcgaatttct tgggtacgaa gtctcaccag aaggaatcaa acccactcaa gaccgaatac      2100
     aagcaatagt taactaccca aaaccacaga caattcaaga cctaagaaga ttcctcggca      2160
     tgattaactt ttaccgcagc tgcttacccc atcaagccga ataccaacat gaattaaata      2220
     aatacctaca taacactaag aaaaaagaca agactccgat aacgtggaca ccagaagcag      2280
     agctagcctt cgagaaatgt cgacaaagca tcctcgacgc tactactctc acgcacccga      2340
     tacatagcgc gccgctacgc ttatataccg acgcctcaaa cacaagcatc ggcgccgtac      2400
     tgcaacaaca agtagacaac gtgtggaaac ctctagcatt tttctcaaaa acaatgagcg      2460
     agacgcagcg acgttacagt gtgtacgatc gcgaattatt agcgatgtac atttctgtca      2520
     aacaccttcg taggttaata gaaggcaacg accttacgat atataccgac cacaaacctc      2580
     tcacctatgc actaacaaga tcaccgagta ccagcgacac atcacgaaga gaacgacaac      2640
     ttcacttcat tagccagttt tgttcaaata ttaagtacgt acacggtgat aacaacgaag      2700
     cggccgacgc cttatcacgc atagaagaga tcgacctaac agaaacatcc atcgactaca      2760
     atcaactcgc tcaagaccag gaaaacgact cagaactaca gagatacatg tcacatccaa      2820
     acctacagtt caccagtatt tcactacccg gaggtcaacg accgcttatc tgtgaaacat      2880
     cgacaggcaa cattcgtcca tatttacccg cgaaatatcg ttttgtcgca ttcaaagcgc      2940
     aacacgattt aagtcaccca ggcgtgcgta ctacgagaaa aataatatct acgaagttct      3000
     tctggccgaa catgaataaa gaagtcggaa catgggcaag aacatgcatc ggttgtcagc      3060
     gagcgaaagt acagcggcac actatcagcc cgctcggcga gttcggaaaa tcccagcgtt      3120
     tcgaacatat tcacgtcgac atcgtgggac cactgccgcc gtcaaatgac taccgatatc      3180
     tagtcacgat gattgaccgc tgcacaaaat ggcctgaagc tataccagta cgcgatatca      3240
     ccgccgacac gatcgccaag gctatttacg acggttggat atcgagattt ggttgcccgc      3300
     tacgacttac gaccgaccag ggaagacagt tcgagtcgtc actgtttaag gcgcttatga      3360
     agaaatgtgg aataaacaga atacgcacta ctgctttcca ccctcaagca aacggacaag      3420
     tcgagcgctg gcaccgaact ctaaagtcag cactcatggc gagatgcgcg cgcacaaact      3480
     ggagcgacga gttatcaact gtgctactcg gcctacgtac agcattacga caagacaacg      3540
     aagtcagccc ggcactcatg acctacggtt caacactccg cgtaccatct gatttcttcg      3600
     tgcctactca gccgaacatc gatgacgccg aattcgtccg tcagctgacc gaaacgatgt      3660
     ctacattatc gccgaacagc aagccacact caaactccac aaggtcattt gtacacaaag      3720
     accttgctac gtgtacacat gttttcgtgc gcaatgacac cgtgcgcagc ccactagtac      3780
     ctccctacga cggcccctac aaagtacttc ggcgcgacag caaacatttc accatacaaa      3840
     tgtatccacg tactgcagtt atttcaatag acagactcaa accagcatat ctactcaacg      3900
     aagacgacac catatcaaca tcagttacgc gccaacaaca agacaagata cctacaacga      3960
     cttcgcgcca acagcaagac tatgtaccta ctgcaatctg cgcgcgaaca aacatcgacc      4020
     tatctaccta caactacaag taacgacgca cggacaatgt cattcacccc accccgcgac      4080
     gcctacgtca cccgcaccgg ccgtacagtg aaaccaaacg tacgcttcgc ttagggggga      4140
     gtga                                                                   4144
//
ID   Gypsy-6_SpEx-LTR repbase;    DNA;    INV; 738 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-738
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4135-4135 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 738 BP; 225 A; 191 C; 154 G; 167 T; 1 other;
     tatagcgkca tacataccta catatacata cctacattct atggcataac caccacacct        60
     catacctatt accagattac ctttaccgta cctccttgaa gaaccagatt acctttacca       120
     tacctccgtg aacaacaaac caataccaac gtttttgact ttctgtgatc agaaacagtg       180
     aaacaggccg ccttgaaaaa ggcgttgcaa acgttttaga cttctgacag aaactcgtct       240
     tgaaaaagac gcttgtaacg tttttagact tctgctgaca gaaactcgtc ttgaaaaaga       300
     cgttttaaaa cgtttttgac ttctgctcag aaacgagata taatgagcaa gcaaataagc       360
     aggcaagcaa gcagaagcga agcccgaaga acacgaaggc acgaagttgc ggtccacgac       420
     actggacacg tctgtagtcg tcggcggcac cggagcgaaa ggacgcgtca cgcggcacgc       480
     gccctattat agcctcgcgc tgtgctcgcg acatcgcgac gaacggcgac cgcgacggcg       540
     catgcgcgca gccgctccgt cgagccttgc gacgaacgcg cgctgctatt ggtcaattgt       600
     atttacatat gtgtgatagt gtataagtta gccataagac atgtaaatat tagtagggac       660
     attttgccga ataaaacatt ccaaaccacg acagcctcga gtttactaat aagaagaaac       720
     cctgctctca ctcctaaa                                                     738
//
ID   Gypsy-6_SpFr-I repbase;    DNA;    INV; 4286 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4286
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1838-1838 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..1133
FT                 /product="Gypsy-6_SpFr-I_1p"
FT                 /translation="MEKLKFTFQIKPTVDGKSNFIAITSIATLDDKVYLVP
FT                 EEYQAISLHKHIQATKTYVTLKSTLKKRYQTRNVWIKTTEEILKTYVDEAG
FT                 NMIFQDQFLEEINQEQSPAVSKMTLEDPIVKILEKLVEDKQNEEKKSKKKL
FT                 AERFVIEKFSGRNSRACQWMEVFEKECERFNIVKEEEKIEILRLFLDKTCI
FT                 DWYSSMMIKFGLQSEWSEWKSSFLQTYTSKGWTDSKYALTFKYQTGSLVEY
FT                 AVKKERLLLEIRKTMDEGTLIDIIAVGLPDFITDRINKEEIVHAKDLFNEL
FT                 GRLEHLVQKRRIIKRKEDSKPVREKCNICDKLNKGARYHPEDSCWFKPKLN
FT                 TEKDKKQIKLINNSELECELQYEDQKN"
FT   CDS           1109..4207
FT                 /product="Gypsy-6_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IAVRRPKKLIVPPLIKIKLLLNKNIEVSGIYDSGSNV
FT                 SLINSKILKIKQNEGTLSNDTNLKTINGVKKAIGIISLDIAIFDIEKKMNV
FT                 FVIDNENFDYDFLVGLDCIQEFHLVQDENLKIHQKLPTQNKEKVSKETNTD
FT                 IDSKELKMDNIINYNESFKTEDFRICINHLSFEEQTIIDDLITENQSVFAT
FT                 DKYDIGKVKGYEAHIDLQVEKYCSKRPYRCTVEDKKEIESQIAKLLEKNII
FT                 EESYSPFAAPVTLAYKREENRKSRLCIDFRDLNKIVVPQSQPFPLIEDLIV
FT                 KTRNCKYFSTLDLNSAFWSIPLRVTDRHKTAFVTQEGHYQWTCLPFGLKTA
FT                 PAIFQRIMCNIIRKHNLGEFTVCFIDDILLFSKSFSDHIRYLKQLFQAIQS
FT                 EGMKLKFSKCTFAADSVKYLGHVIQNNSVRPLKDNLISIKNFPIPKTPKNV
FT                 RQFLGKINFYHKYVPNIAIKLEPLHNLLRKGQPFIWTDKCQESFEEMKHIL
FT                 CSQPILTIYDPNLPIHIYTDASILGVGAVLKQKQKNNEEKPVAYFSKKLNE
FT                 VQKRKKAVYLECLAIKECVQYWQHLLIGRKFTVFTDHKPLENMNIKCRTDE
FT                 ELGDLTHYLSQYDFQIKYSPGRYNVEADCLSRNPVLEPEENLEEQLKIVNM
FT                 ITIEDILQDQNQNEYIQSKRDKLYTKNNVYYKKVREKEKIIISEKLSIELM
FT                 KKIHSDLSHIGIKQMQKMISTVYTAENMTKNIKIICESCTICIKNKSRGKN
FT                 KYGLMSQLGPAKKPFQICSIDTIGGFGGSRSTKRYLHLLSDHFTRYAYILT
FT                 SSTQNANDFIKLIKSCTECDDIELILSDQYPGINSRDFKSFLDEKNIQIIF
FT                 TAVNSPFSNGLNERLNQTLVNKIRCKINEQDTRMAWTTVAHNCVKKYNETV
FT                 HTVTGYAPKYLLYGTDVTILPNELKQERTKHDLIQDRRRALENSIKSHNYN
FT                 KTIYDKHRKYIDFNVGDTVFVENGNKLNRKKLDELKIGPYKIIEKISTSIY
FT                 KINTDHKRSESNYFHISKLTPAPAIYV"
XX
SQ   Sequence 4286 BP; 1777 A; 667 C; 747 G; 1095 T; 0 other;
     aaacgacatt aactgtcaca aaaatggaga aactaaaatt tacttttcaa attaaaccaa        60
     cagtggacgg aaagtcaaac ttcattgcca taacctcaat tgccacacta gatgacaaag       120
     tttacctggt tcctgaagag tatcaagcaa tatcacttca taaacatatt caagccacga       180
     aaacatatgt tacattaaaa agtacattga aaaagagata tcaaactaga aatgtttgga       240
     taaaaacaac agaagaaatt ttaaaaacat atgtcgatga ggctggaaac atgatttttc       300
     aggaccaatt tctagaagaa attaaccaag aacagtcacc agctgtgagt aaaatgacat       360
     tagaggatcc tatagtgaaa attttggaaa aattggttga agacaaacag aatgaagaaa       420
     agaagagtaa gaaaaagtta gctgaaagat ttgtgattga aaaatttagc ggaagaaatt       480
     caagagcatg tcagtggatg gaagtattcg aaaaagaatg tgaaagattt aatattgtaa       540
     aagaggaaga aaagattgaa attctcagac tttttcttga taaaacatgc atagattggt       600
     actcctccat gatgataaag tttggattac aatctgagtg gtcagaatgg aaatcaagtt       660
     ttttacaaac atacaccagt aaaggttgga ctgacagcaa atatgctttg actttcaagt       720
     accaaacagg atctttggta gaatatgcag tgaaaaaaga aagactttta ttggagataa       780
     gaaaaacaat ggatgaaggg accctaattg acataatcgc agtcggctta ccagatttta       840
     taacagatag gattaacaaa gaagaaatag ttcatgctaa agacttattc aatgaacttg       900
     gcagactaga acacttggtg caaaaacgaa gaattataaa aagaaaagaa gatagtaaac       960
     cggttagaga aaaatgtaat atctgtgata aattgaataa aggagcccgc taccacccag      1020
     aagattcttg ttggttcaaa ccaaaattga atacggaaaa agataaaaaa cagataaaac      1080
     ttatcaataa ttcagagttg gaatgtgaat tgcagtacga agaccaaaaa aactaatagt      1140
     gccgccattg atcaagataa aattactact aaataaaaat attgaagtat cagggatcta      1200
     tgactctgga tctaatgtgt cattgataaa ctcaaagata ttaaagataa agcaaaacga      1260
     aggcactctt tcaaatgata ctaatctaaa aacgattaat ggcgtcaaaa aagctatcgg      1320
     aataatttca ctggacatag ccatctttga tattgagaaa aaaatgaatg tttttgtgat      1380
     agataacgaa aattttgatt atgacttttt agtgggacta gattgtatac aagaatttca      1440
     tctagttcaa gacgaaaatc tgaaaattca tcaaaaatta cctacacaaa acaaggaaaa      1500
     agtttctaag gaaacaaata ccgatattga ttctaaggaa ttaaaaatgg ataatatcat      1560
     aaactacaat gaaagtttta aaacagaaga ctttagaatt tgtattaatc acttgagttt      1620
     tgaggaacag acaataattg atgacttaat aacagaaaac cagtcagtgt ttgcgacgga      1680
     caaatatgac attggaaagg taaaaggtta tgaagcacac atcgatctac aagtagaaaa      1740
     atattgcagt aaaagaccat atcgttgcac agtggaagac aagaaagaaa tcgaaagcca      1800
     aatagcaaaa ctactggaaa agaatataat agaagaatca tatagcccat ttgcagcgcc      1860
     tgttacattg gcctataaaa gagaagaaaa cagaaaatca agactgtgta tagacttcag      1920
     agatttaaat aagattgttg taccacagtc acagcccttc ccgctcatcg aggacttaat      1980
     agtaaaaaca agaaattgta agtatttttc aacgctggac cttaattctg ctttttggtc      2040
     cataccactg cgtgtcacag atagacacaa aactgcattt gtgacacaag aaggtcatta      2100
     ccaatggacc tgtctaccat ttggattgaa gaccgctcca gccatattcc aaaggataat      2160
     gtgtaatatt atacggaagc ataatcttgg agagttcaca gtatgtttca ttgatgacat      2220
     tctgttgttt tcgaagtcat tctcggatca tataagatat ctgaagcagt tatttcaagc      2280
     aattcaaagc gaaggtatga aactaaaatt ctctaaatgc acatttgcag ccgattcagt      2340
     aaaatacttg gggcatgtaa tccagaataa ttcagtcaga cctctgaaag ataatttgat      2400
     atcaattaaa aatttcccga ttccaaaaac tccaaaaaat gtgagacaat ttttaggaaa      2460
     gataaacttt taccataaat atgtgccaaa tattgcaata aaattagaac cactacataa      2520
     tcttttgaga aaaggacaac ctttcatctg gactgacaaa tgtcaagagt catttgaaga      2580
     aatgaaacat atattatgtt cccaaccaat attaacaatt tatgacccaa acttacctat      2640
     tcacatatac acagatgcca gcatattagg agtaggagca gttctgaaac aaaaacaaaa      2700
     aaacaacgaa gaaaaacctg tagcctactt ttcaaagaaa ttaaatgaag tgcaaaaaag      2760
     gaagaaggct gtgtatctgg aatgtctggc aattaaagaa tgtgttcagt attggcaaca      2820
     cctactaata ggcagaaaat tcacagtctt tacagatcac aagccactgg aaaatatgaa      2880
     cataaaatgt agaacagacg aagagctagg tgacttaact cattatttat cgcaatatga      2940
     tttccaaatt aaatattctc caggaagata taatgttgaa gcagattgcc tgagcagaaa      3000
     cccggttctc gaaccagaag aaaacttaga agaacagcta aaaatagtaa acatgataac      3060
     aatagaagat attttacaag atcaaaatca aaatgaatat atacaaagca agagagataa      3120
     gttatataca aaaaacaatg tgtattacaa gaaagtaaga gaaaaagaaa aaattattat      3180
     atcagagaaa ttaagcatag agctcatgaa gaaaatacat tcagatctaa gccatatcgg      3240
     aattaaacaa atgcaaaaaa tgataagcac tgtgtataca gcagagaaca tgacgaaaaa      3300
     cataaaaata atttgtgaaa gctgcacaat atgcataaag aataaatcaa gaggaaaaaa      3360
     taaatatgga ttaatgtcac aattggggcc tgccaaaaaa ccatttcaga tatgctccat      3420
     cgataccatt ggaggctttg gaggatcccg gtcaacaaag agatatttac acctattatc      3480
     agatcatttt acaaggtatg catacatact aacatccagt acacaaaatg caaatgattt      3540
     tatcaaactt ataaaaagtt gtacagaatg tgatgacata gaattgatac tctcggacca      3600
     atacccaggt atcaactcaa gagatttcaa gagtttttta gatgagaaga atatacaaat      3660
     catatttaca gcagtaaact cacctttctc gaatggtttg aatgagagac taaaccaaac      3720
     gctggtcaac aaaatcagat gtaaaataaa tgaacaagat acaagaatgg catggacgac      3780
     tgtggcacac aattgtgtaa agaaatacaa cgagacagtg cacacagtta ctggatatgc      3840
     tccgaaatac ttactttatg gcacagatgt cactattttg ccaaatgagc taaaacagga      3900
     aagaactaaa catgatttaa tccaagatag gagaagagct ctagaaaact caatcaaatc      3960
     acataattat aataagacaa tttatgataa gcatcgaaaa tatatagact tcaacgtagg      4020
     agacacggtt tttgtggaaa acgggaacaa actcaacagg aaaaaacttg atgaactgaa      4080
     aataggaccc tacaagatta tagaaaaaat atctacatca atatacaaga taaacactga      4140
     ccacaagaga tcagagtcta actacttcca catatcgaag ctcacaccgg ctcctgctat      4200
     ctacgtgtga agagtgtatg ccgggaacat caacctcatt gtttatattc acttttactc      4260
     attgtttatc tcttttgggg gggaga                                           4286
//
ID   Gypsy-6_SpFr-LTR repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-371
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1863-1863 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 371 BP; 131 A; 45 C; 58 G; 137 T; 0 other;
     tgtaaagaaa actatagttt cctttatttg aatttacgcg cgcatatagc aactctttgg        60
     tagtttagag tttttaagaa agagtaaact gtgacggtca tgacgcacgc cttttgttaa       120
     tgtcaaataa gaaaaatttc tctttacaaa gaataagtta atatctaatt ttaaataaaa       180
     taagaaatcg acaccggaat aataacattt aatgtcgttt ctttgattta caggtatgta       240
     agttaatgtt tgtttgattt gtttcatgat ttgtttctta gattaactga aataaaactt       300
     tgatttacag agaaactcaa tgtgtttaat tgacggtgcc gtatatcaag ccactataaa       360
     ataatattat a                                                            371
//
ID   Gypsy-6_TrNi-I repbase;    DNA;    INV; 5831 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5831
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 211-211 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           772..1968
FT                 /product="Gypsy-6_TrNi-I_1p"
FT                 /translation="MAQNLKEIYEKLKGIKEYLTKLGPSRRTQNIIQKRLN
FT                 ENNIIYGEYLIIKSDLENQIKKGEVKNSDLDSIQVLCTDISNLYSRINQLC
FT                 SSGIEKKIVKMEKFQLKTAAALLPVMSSDEEVTKRLISAIELYSSMIEKDD
FT                 EQLLVNFVLKTRLSESAKLRLQQTYSSCDELIKEMRLHLLTKKSSNAIHAE
FT                 MVNCKQKSNTIDDFGKKMEQLFVDLTISQADGNPEAFNILKPINEKLAVNK
FT                 FTNGLRNKNLSVILAARNYTTLKHAIRAAKDEELVSSQDDSNSTEGEILVA
FT                 SEEGSGESTMHNRFFRTPSNYRGRGGQGNYQRFPRGGYFNQSWQRSSRYQR
FT                 YRGRGTYRGQRGKYQNRGMYPLEPNIPQSEINNSNNTSDLVQPSTSEDNTN
FT                 QFFRA"
FT   CDS           1868..5593
FT                 /product="Gypsy-6_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SQISLSQKLTTVIILVTLFNPQLPRTIRISFFVPNLF
FT                 AYEFSNYVKVPFNNTEYNWLVDSGASISAVKNEIVAHWNLPIHNQNIIING
FT                 IGGRITTIGYVYLNLSLNGHTFQHKFYVIQNLPCYTEGILGQDFLTKHRCV
FT                 LNYEHNTLTLGQNLILPLHIGKLNRNVYMNIPPRCEKIFFIDTNETEDCVV
FT                 VSDELSEGVFLAGGISKPENGKIPIQIMNTCESEVSLSYFKPKLEKLCYYK
FT                 VCNFEKSPITVDRVKTLLNLLKLDHLNGEEKSSILNICAKFSDVFHISGDK
FT                 LEVSKISEQKIRLKPNTTPIYTKPYRLPFSQREELDQQISDMLTDKIIEPC
FT                 SSEWASPVLLVPKKESGDGSKKMRLVIDFRKLNNCILDDKFPLPNITDILD
FT                 ALSGSVYFSHLDLYKGYFQLGITKESRPCTAFVTSSGQYQMTRLPMGLKTS
FT                 PSSFSRAMTVAMSGLHYDKCLVYLDDLICFGRNLAFHNKNLIDIMLRLRKV
FT                 NLKLNPDKCDFLKKEILYLGHIISAEGLKPDPSKVAALQNYPVPKNTDDVK
FT                 KFIAFANYYRKFIPNFALLANPLNNLCRKNIEFEWNEECNNSFLSLKEKLI
FT                 SPPLLQYPNFDKSNVFLLKTDASGYAIGSVLSNSDGRPIAYASRTLNKAEK
FT                 NYPVIEKELLAIVWSVKYFRPYLFGRKFKIQTDHRPLVYLFGMREPSSRLM
FT                 KFRLTLEEYDFDIEFVRGKDNAAADVLSRIIITSDELKTINNECLNVMTRS
FT                 KRKAMIEKDSYHQSDIISTGNQLSDQPNVVEVLKKTNRDVEITLLDRVTLR
FT                 KLTKKESYYESLNKIYYYFPSKSSIYVDPNSLSAITRDVLLRDLEYICKKN
FT                 QISELIIIKKRENIKFMELIVEEINKNVTWKGPRLCVINDVRRIENKDTRR
FT                 IIINDFHLLPTSGHAGIKRTLNNIKKYYYWPGMEKDISDFINKCDACQRNK
FT                 HFRYIKEPLSITTTSSNSFEKIFLDLVGPLEKDDEGYSYILTIQCELTKYL
FT                 VATPIKSKTTESVARAFVEHFILRYGIPKTIATDKGTEFMSSTMREVSKLL
FT                 NIEQRFASAYHHESIGALENTHKSLGNYLRIHCRNSSRSWSQWLPYWQFSY
FT                 NITVHTETKYTPYELVFGHVCILPNNLTSNVDKLYNFDSYPLELKFRLQRA
FT                 HQDARENLIVSKQNRKLLYDYKINPILYKKGDLVLLKNENCSKLDSLYLGP
FT                 YIVVDDMAPNVKIVKSGKEIIVHKNRTRPYYS"
XX
SQ   Sequence 5831 BP; 2037 A; 873 C; 1082 G; 1839 T; 0 other;
     tggcgaccct gccagaggcg cgattcgggt tcgcgaaagt atttacattc cgttgcccat        60
     aaaagggttt ctcaagaatt acatatgaac tctggacgtg gctcagtgca aagttataat       120
     aatgaatgtt actaagcagc taatctttat cgcgacacct gttcgctgtg tgttgtttct       180
     gtattcaagt ccactttatt acttaattgt cgaaaatggg aaagtctgta tctaaggaag       240
     aggtactcat tgcgcagaac gctggtggtt ccaatggagc agatattact caatttatgg       300
     cccacgcaag tgtcacgagt ataatactac tgatgattgt gacgttcatc atttgtctgg       360
     gagcctgtta cgtcctgatg atattgtata aaaagtgtca tgggcatctg atgcggcagg       420
     aaatcttgcg acattctctt cgtcgagtgg tgcccaggct gagaagggca caggatacag       480
     gtgaagcttc ttacaagacg gaggacgtgt gatttttttt ttcctttcct ttgaggaagt       540
     agtgagtgcg cgatagtgtt tacgtcaagt gattaaatcg gtaaaagtga ttaaacggcc       600
     atgtgtggcg tgtatctttc ctagtacagt cggttacaag tttttttttt tatgggaact       660
     ttaatgttta cttttgttta gataagactt aacattatta tgtaatactt atgcaaagtc       720
     atgtttacat taaaattata ttgttattat aattttgtgt cttaaaaggt aatggcccag       780
     aatcttaaag aaatttatga aaaacttaaa ggtataaagg aatatctaac caaattaggg       840
     ccaagtcgta ggacacaaaa tattattcaa aagaggctta atgaaaataa tataatttat       900
     ggcgaatatt tgattattaa atcagattta gaaaatcaga ttaaaaaggg agaagttaag       960
     aacagtgatt tggatagtat tcaagtttta tgtaccgata ttagtaattt atattctcgt      1020
     ataaatcaac tttgttctag tggtatagaa aagaaaattg tcaaaatgga aaagttccaa      1080
     ttaaaaacag cggctgctct attacctgtt atgagttctg acgaagaagt gacgaagcgt      1140
     ttaatatctg ctatagaact gtatagttct atgatagaga aggatgacga acagttgttg      1200
     gttaattttg ttttgaaaac gcgtctttct gaaagtgcta aattacgttt gcaacaaaca      1260
     tactcctcat gtgatgagct aattaaggaa atgcgtttac accttctcac aaaaaaatct      1320
     agcaatgcta ttcatgcaga aatggttaat tgtaaacaaa aatcaaatac aattgatgac      1380
     ttcggaaaga aaatggaaca actgttcgtt gatctcacta tttctcaggc agacgggaat      1440
     ccagaagctt ttaacatcct gaaaccgatt aacgaaaagt tagcggttaa caaatttact      1500
     aatggtttgc gtaacaaaaa tttaagtgtg attttagcag ctcgaaacta cactactctc      1560
     aaacatgcca ttcgggcggc gaaagacgag gagcttgtgt ccagtcagga tgactcaaac      1620
     tcaactgaag gtgagatttt ggtggccagc gaagaaggat caggtgagtc aactatgcat      1680
     aacagatttt tcagaactcc atcaaattat cgtggtcgtg gtggccaagg gaactaccaa      1740
     cggtttccta gaggaggata tttcaaccag agttggcaac ggtcatcgag atatcagaga      1800
     taccgaggtc gtggtacata cagaggacag agaggaaaat atcaaaatcg aggtatgtac      1860
     cctttagagc caaatatccc tcagtcagaa attaacaaca gtaataatac tagtgacctt      1920
     gttcaaccct caacttccga ggacaatacg aatcagtttt ttcgtgccta atttatttgc      1980
     atatgaattt agtaattatg ttaaagttcc ttttaataac acagaatata actggttggt      2040
     agattctggt gctagtattt cagccgtgaa aaatgagata gtcgctcatt ggaacttacc      2100
     aatccataat caaaacatca ttataaatgg aattggtggt cgaataacaa ctatcggata      2160
     tgtttattta aatttatctt taaatggtca cacattccaa cataagtttt atgtaatcca      2220
     aaacctacca tgttatactg aaggtatatt aggccaagat tttctaacta aacatagatg      2280
     tgttttaaat tacgaacata atacattaac tttaggtcag aatttaattt taccattaca      2340
     tataggtaaa ttaaatagaa atgtttatat gaatatacca ccaaggtgcg aaaaaatttt      2400
     tttcatcgat actaatgaaa ccgaagattg cgttgtagtc tcagatgagt taagtgaggg      2460
     agtttttcta gctggaggta taagtaagcc agaaaatggt aaaattccaa ttcaaataat      2520
     gaatacttgt gaatcggaag tatcgttaag ctattttaaa cctaaacttg aaaaattatg      2580
     ttattacaaa gtttgtaatt ttgagaagtc acccataacg gtagataggg tcaaaacatt      2640
     attaaattta ttaaaattag atcatttgaa tggcgaagaa aaatcttcca tattaaacat      2700
     atgtgcaaaa ttttctgacg tgtttcatat ttctggagat aaattggaag tatctaaaat      2760
     cagcgaacaa aaaatacgtt taaaaccgaa cactacacca atatatacca agccttatcg      2820
     tttaccgttt tcgcaacgtg aggagctaga ccagcagatt agtgatatgt taactgataa      2880
     aattattgaa ccatgtagta gtgaatgggc tagccctgtt ttactggtcc caaaaaaaga      2940
     aagtggggat ggctctaaga aaatgagact tgttatagac tttcgtaaac tcaataattg      3000
     tattttggat gacaagttcc cactccctaa tattactgat attttggatg cattatctgg      3060
     gtcagtttat tttagtcacc ttgaccttta caagggttat tttcaattgg gcattacaaa      3120
     agaaagtagg ccgtgtacag cattcgtaac ttcgtcggga caataccaaa tgactcgact      3180
     tcccatgggt ttgaagacaa gtccaagttc tttttcaaga gctatgacag tggcaatgtc      3240
     tgggcttcat tacgacaaat gtctcgttta tttagatgat ttaatttgct ttggacgcaa      3300
     tttagccttt cataacaaaa atctcattga tataatgctt agactacgaa aagtgaacct      3360
     aaaactaaat ccagacaaat gtgactttct gaaaaaagaa attttgtatt taggtcatat      3420
     tatatcagct gaaggtttaa aaccagatcc gtctaaagta gcggcattgc aaaattatcc      3480
     agttcctaaa aataccgatg atgttaaaaa attcattgcc tttgcaaatt actatcgaaa      3540
     atttatacct aactttgcac ttttagctaa tcctttaaat aatctttgtc gaaaaaatat      3600
     agaatttgag tggaatgaag aatgtaataa ttctttttta tcactaaaag aaaagttaat      3660
     atcgcctcca ttgttacaat atcctaattt tgataaaagt aatgtgtttt tacttaaaac      3720
     agacgcatct ggctatgcaa tcggttcagt tttaagtaac agcgatggta gaccaattgc      3780
     ttacgcaagc cgtaccttaa ataaagctga aaagaattat ccagttattg aaaaagaatt      3840
     gctggctatt gtatggtctg ttaaatactt ccgtccttat ttatttggtc gcaagtttaa      3900
     aattcaaaca gatcatcgtc ctttggtata tttatttggc atgagagagc ctagtagtag      3960
     actcatgaaa ttccgactga cacttgaaga atatgatttt gatatagaat ttgtgagggg      4020
     aaaagataat gcggcagctg acgttctatc tcgtataata ataacgtcag atgaattaaa      4080
     aactataaat aatgagtgtt taaatgttat gacgcgctca aaaagaaaag caatgataga      4140
     gaaagatagt tatcatcaat cagatattat tagtacaggt aatcaactgt cggatcagcc      4200
     aaatgtcgtt gaagtactca aaaagactaa tagagacgtt gaaattacat tacttgacag      4260
     ggtaacttta cgtaaattaa caaagaaaga aagttattat gagtcattaa ataaaattta      4320
     ttattatttt ccttctaagt catccattta tgttgatccg aattctttat cagcaataac      4380
     gcgagacgtg ttgttgagag atttggaata catttgtaag aagaatcaga taagtgagct      4440
     tataataatt aagaaaaggg aaaatatcaa gtttatggaa ctcattgtgg aggaaataaa      4500
     taaaaatgta acttggaagg gtcctagact ttgtgtcatt aatgatgttc gtagaataga      4560
     aaataaagat actaggagaa ttataattaa tgattttcac ttgttaccta caagtggcca      4620
     cgcgggaatc aaaagaacac taaacaatat aaaaaagtac tactattggc ccggtatgga      4680
     aaaagatata tcggatttca ttaataaatg tgatgcgtgt caaagaaata aacattttag      4740
     atatattaag gaaccacttt caattacaac aacgtcatca aattcttttg aaaaaatatt      4800
     cttagattta gtcggccctc ttgaaaaaga tgatgagggg tattcttata ttcttacaat      4860
     acaatgcgag ttaactaaat acttagttgc tactcccatt aaatcaaaaa ctaccgaaag      4920
     cgtggcaagg gcgttcgtag aacattttat attaaggtat ggtattccaa agacgattgc      4980
     tacggacaaa ggaacggagt tcatgtcttc tacaatgagg gaggtaagta aacttttaaa      5040
     tatagaacaa aggttcgcgt cagcatatca tcatgagagc atcggcgcgc ttgagaacac      5100
     acacaaaagt ttaggtaact atctcagaat tcattgcaga aatagttcaa ggtcatggag      5160
     tcagtggtta ccatattggc aattttctta taatattaca gtacacacag aaacaaagta      5220
     taccccttat gagcttgttt ttggacatgt atgtatctta ccaaataatc taacttcaaa      5280
     tgttgataaa ctgtacaatt tcgatagtta tccactagaa ctgaaattta ggttacaaag      5340
     agcacatcaa gacgctaggg aaaatttaat tgttagtaaa caaaatagaa aattattata      5400
     tgattataaa ataaacccga ttttatacaa aaaaggagat cttgtgttat taaaaaatga      5460
     aaattgttct aaattagata gtttatactt aggtccttat attgttgtag acgatatggc      5520
     accaaatgtg aaaattgtga aaagtggcaa ggaaataata gtacacaaaa acagaactag      5580
     gccttattat tcttaaaata aatcaagtca ttcattatat tatgtgtgag cactattgtc      5640
     gccaagtgta ctttaatact ttagtatcta attgttattg tttaaggtgg atcatgtatc      5700
     acgctactat ggaataatcg tcctatgtta tgcataacat tgacttgtat tctttaaata      5760
     taagtactta attttgtatt taaaaaaaaa tgtactatat aatcattttt ttttttgttt      5820
     tatggggaag g                                                           5831
//
ID   Gypsy-6_TrNi-LTR repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-141
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 251-251 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 141 BP; 41 A; 28 C; 23 G; 49 T; 0 other;
     tgtagagtag aaatacttta cgtatatatg ctgctatatt attgtatgtt ctaggctatc        60
     ctaagccagt tctatgtcgg ggttcctata ataaacacgt attatttgaa acaatcgttt       120
     gattccacac ccgacacctc a                                                 141
//
ID   Gypsy-6_TrVa-I repbase;    DNA;    INV; 5158 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5158
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 252-252 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..4489
FT                 /product="Gypsy-6_TrVa-I_1p"
FT                 /note="zinc finger, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MDEQQFQQLLTLMNRNQEDFVNRVITRMAEATSTGNG
FT                 NGAGTTGAQQVISLHVPQFENFDAKKETFSNYIQRFENYMRLKEIFNDKAK
FT                 CAQILLNSIGAANYNLLVALVAPKVTSDLSYDELIKELENHLAPKKNILVA
FT                 QHCFLSVYQKDHEKVNDYVANLKRNITDCDFKVKCSCDLEVSITEQQLRMQ
FT                 FIRGIKDNWIREKILESNLLNFTEIVQKAVALESSKLDSQRLSQAIPSKNE
FT                 STEVNKVYGQRQRSQNRGHRNRSKSSNQRSHSSSNQRSHSYRPKSKSRSQI
FT                 DYKKLGIDNLCLRCGRTNHLSLDCTVNQSKLRCSECRRTGHVSKVCIKTLL
FT                 SKNQSVSNLEDEYSDEEDIRYYDINKVGDVPDTRSLDCEYDSRKFFITVKI
FT                 ENKAQTFEFDTGAGRTLLPVTLFKQLGIKKRLQKTPIVFRSYTRESFKPLG
FT                 RVQVRVKYKGRQTKEDLFVVPDGFTPLMGRVWARHLRIELADLDENESVSA
FT                 FGHQILRVEDIENIEKDFPEIFRQKVGCVPNVVIKHQLREKAKPCYIKERE
FT                 VPQALIEPTDKELDGLESTDIIEQETMSDWGSPLVVVPKGDGSVRLCVDYK
FT                 VAVNDCLVNVNYPIEKVDNILNQLRGAKYFCRLDLYKAYLHLLVDEESSKI
FT                 QAISTHRGTYRMKRLSFGIKTAPAHFNKVMRDILKGLTALSYFDDIVVWGE
FT                 TLEECKRNLYAVLQRLNENDLHLNIKKCVFFQTKIAFLGYIIRCNEISKCP
FT                 SKVQAVVDLPRPKDIAGVRRLLGLVTYYSRLLPDLSTMTYPLRQLLRKNQK
FT                 FHWSANAEAAFLKLKSEMVSDRVVVPYDPTLPIELSTDASPVGVAAVIFHT
FT                 IDGLERPIAFASRSLTKAEQNYSQLDREALAIIFGANRFFEYLYGRQFTLN
FT                 IDNKALNRIFHPSAGLPKMTAGRLLRYATFLAGFEFNLKLKKGSEHQNVDC
FT                 LSRAPIKELKFSYDRFINEEVQQVSEMTAIHISSKNLTPDLIIEETRKDEE
FT                 LSKLKEEITGSSQEMDFYIENEMVFKGYRIVIPKSLRSVVLTELHSTHVGI
FT                 QKMKQLARRYCYWSGIDKDIENLVKSCENCALLRHNPSKAPPHQWDPPKEN
FT                 WDRVHIDYAGPCEGHQLLIIIDAKSKWMEIGISKDAPDSAKSIELLENVFS
FT                 RYGYPRSLASDNASIFTSEEFGNYCKTNGILQKFSAAGHPATNGLAERSVQ
FT                 TIKRRLKAMHDEPIPVGKKVQKILHVYRATPLANNKSPSEMFLNRQIRIKL
FT                 GTLRLQLQERSNQPNKPGTRTLAVGDRIQSKFLVKNKSVWKFGEVTRKLGK
FT                 LHYDIKLDEGRTVKRHINQLIKTGVKRVTFAPDVKSKQDEAISNQETPVQN
FT                 FLPDPIVVNVSGNSPRQALRINQPEVLQPRATINQPEILQPKVIQPLINQP
FT                 GSIQPEICNH"
XX
SQ   Sequence 5158 BP; 1789 A; 1012 C; 957 G; 1400 T; 0 other;
     atttggcgac gaggataaaa tgtaagtgcc gtttcgaaat gtgagtacgt tcgcgagtta        60
     attttctttt tttttcttga ttttcgagaa aatcgcggaa ttcgccggtg ccgattctaa       120
     cctaactttt ctttgttcgg tcaacccctt atcaaccgta tcaaccacat ggcagcataa       180
     cgcaaattat cgacaaaccc gaaaagaaga atcgaaaatg gatgaacaac aattccaaca       240
     acttcttact cttatgaaca ggaatcaaga ggactttgtc aacagggtaa taactcgaat       300
     ggccgaagca acctcaacgg gcaatggtaa tggtgcaggt acaacaggtg ctcagcaggt       360
     tatcagtttg catgtccctc aatttgaaaa tttcgatgca aagaaagaaa ctttcagcaa       420
     ttatatacag cgttttgaaa actatatgcg attaaaggaa attttcaacg ataaagcaaa       480
     atgtgcccaa attttactga attccattgg cgcagctaac tataatcttc tagttgcact       540
     agtggcccct aaagtaacct ctgatttatc ctatgatgag ttaatcaagg aactagaaaa       600
     tcatttagct cctaagaaaa atattctagt cgctcaacac tgtttcttat cggtttatca       660
     aaaagatcat gaaaaggtaa atgattatgt cgctaacctc aaacgcaaca ttactgattg       720
     tgatttcaaa gttaaatgtt cttgcgacct agaagtttct ataactgagc aacagcttag       780
     gatgcaattc atcagaggta taaaagataa ctggattaga gagaaaattt tagaatccaa       840
     tttgcttaat tttacagaaa tagttcaaaa agcagtcgcg ctcgaatcgt ctaaactcga       900
     cagtcaacga ctttcacaag ctattccttc taaaaatgaa tcaacagaag tcaacaaagt       960
     gtatgggcaa cgtcaaagaa gtcaaaacag aggtcatcga aacagatcta aatcatcaaa      1020
     ccaacgaagt cacagctcat caaaccagcg aagtcacagc taccgtccca aatctaaatc      1080
     acggagccaa atcgactaca agaaactagg aatcgacaac ttatgtttaa ggtgtggccg      1140
     taccaatcac ttatcacttg actgcacagt caatcaatcg aaacttaggt gtagtgaatg      1200
     ccgccgcact ggacacgtaa gtaaagtttg cattaaaacc ctattatcta aaaatcaatc      1260
     tgtatcaaat ttagaagatg aatatagcga tgaagaagac attagatatt atgatatcaa      1320
     taaagttgga gatgtgcctg atactagatc acttgattgt gaatacgatt ctaggaaatt      1380
     ttttatcact gtgaaaatag aaaacaaagc gcaaactttt gaattcgaca caggagcagg      1440
     acgaacattg cttcctgtga cacttttcaa acaattaggt atcaaaaagc gattacagaa      1500
     aacccctatt gtttttcgat catataccag agaatctttt aagccgctgg gaagagtgca      1560
     agtccgagta aaatataaag ggcgacaaac aaaagaagat ctatttgttg ttcctgatgg      1620
     gttcacgccc ttgatgggcc gagtttgggc aagacaccta agaattgaac tagcagatct      1680
     ggatgaaaat gaaagtgtgt cagcttttgg gcatcaaatt ttgcgtgtcg aagatatcga      1740
     aaacattgaa aaagattttc cagaaatttt tcgtcaaaaa gtaggctgcg taccaaacgt      1800
     tgttatcaag catcaactta gagagaaagc aaagccttgt tacattaaag aacgagaagt      1860
     tcctcaagct ttaatcgaac caaccgacaa agaacttgac ggtttggaat caactgatat      1920
     tattgagcaa gaaaccatga gcgattgggg atcaccccta gtagtggttc ccaaaggtga      1980
     tggctctgta cgtttgtgtg ttgattataa ggtggcagta aatgattgtt tagtgaatgt      2040
     caactaccca atcgaaaaag ttgacaatat acttaaccag ctcagaggtg ctaaatattt      2100
     ttgtcgatta gatctctata aagcctacct acatctgttg gtcgatgaag aaagcagtaa      2160
     aatacaagct atatcaaccc acagaggcac atatagaatg aaacgtttaa gttttggaat      2220
     taaaacagcg ccagctcatt tcaataaggt tatgagagat attcttaaag gattaacagc      2280
     cttatcttat tttgatgaca tagtcgtctg gggtgaaacg ttagaagaat gtaaacgaaa      2340
     tctctacgct gttttgcaac gcttaaatga aaatgatctc catttgaata taaaaaagtg      2400
     tgtttttttc cagacaaaga ttgcatttct agggtacatc atccgatgca atgaaatctc      2460
     taagtgccct tcgaaagtcc aggcggtagt ggatttgcca agacctaaag acatagcagg      2520
     agttcgccgt ctacttgggt tagtcacgta ttattcaaga cttttaccag acttatctac      2580
     catgacgtat cccttgcgac aactcctcag gaaaaatcaa aaattccact ggtctgcaaa      2640
     tgccgaagct gcatttctca aattgaaatc cgaaatggta agtgatcgag tcgttgtgcc      2700
     ttatgatcca accttgccaa ttgagctctc aacagatgcc agcccagttg gtgtggctgc      2760
     tgtcattttc catactatcg atggattaga acgtcctata gcttttgcgt ctcgttcatt      2820
     aacaaaagcg gaacaaaatt attcccaatt ggaccgagag gcgttagcca ttatttttgg      2880
     agcaaatcgt ttttttgaat acctgtatgg aagacagttc accttgaata ttgataacaa      2940
     agctctgaat aggatttttc atccatcagc agggctcccg aagatgaccg ctggacgttt      3000
     attgagatat gcaacatttc ttgcaggatt tgagttcaac ctcaaattaa aaaagggttc      3060
     agaacatcaa aatgtcgatt gcttatcgag agcgcccatc aaagagctta aattttctta      3120
     tgacaggttt atcaatgaag aagttcaaca agtctccgaa atgactgcca tccatatatc      3180
     cagcaaaaat cttactcctg atctaatcat cgaagaaacc aggaaagatg aagagctatc      3240
     gaaacttaaa gaagaaatca cgggatcttc acaagaaatg gacttttata ttgaaaatga      3300
     aatggttttc aaaggctatc gaatcgtcat ccctaaaagt ctacgttcag tggtactaac      3360
     ggaacttcat tcaacgcatg tgggaatcca gaaaatgaaa cagcttgcta gaagatactg      3420
     ttattggagc ggtattgaca aagatatcga aaacttagtc aaatcgtgcg aaaactgtgc      3480
     cctacttcga cataacccat caaaagcccc accgcatcaa tgggaccctc ctaaagaaaa      3540
     ctgggaccga gtccacatcg actatgctgg cccctgtgaa ggacatcaat tactaattat      3600
     tatcgatgcc aaatcaaaat ggatggaaat aggaatttcc aaggatgcgc cggactcagc      3660
     caaatcaatc gaacttttag aaaatgtttt ctcaagatat ggataccctc gaagtttagc      3720
     ctcagacaac gcttcaatct tcaccagtga agaatttgga aactattgta agaccaacgg      3780
     aattctgcaa aaattttctg ctgccggaca tccagctaca aacggattag cggaacgcag      3840
     tgtacaaacg atcaaacgcc gtctaaaagc catgcatgat gagccaattc cggtaggaaa      3900
     gaaagtgcag aaaattttgc atgtctacag agcgacaccc ttagcaaaca acaaatcgcc      3960
     gtctgagatg tttttgaatc gacaaattag aatcaaatta ggaactttac gtcttcaatt      4020
     acaggaacga tcaaaccagc caaacaagcc aggaaccaga acacttgcag ttggggacag      4080
     gatacaatcc aaatttcttg ttaaaaacaa gtctgtttgg aagttcggag aagttacacg      4140
     taaacttggg aaactacact acgacatcaa gctcgatgaa ggccgcactg tcaagcgcca      4200
     cattaatcag ctaatcaaaa ccggagtaaa gagagtaact tttgctcccg acgttaaatc      4260
     aaaacaagat gaagccattt caaatcaaga aacgccagtg caaaattttt tgccggatcc      4320
     gattgttgtc aatgtatctg gaaattctcc cagacaagca ctcagaatca accaaccaga      4380
     agttttgcaa ccaagagcaa ccatcaatca accagaaatt ctgcaaccaa aagtcattca      4440
     acctttaatc aatcaaccag gaagtattca accggaaatt tgcaaccatt agtcaacaac      4500
     caaaagtagt caaccgaaaa ttgtgcaaac tggaagtcat caagcggaag cctctcaatc      4560
     acatcctgtt gtcgatttga caagtcccga aagaagttgc agccaaaaag aaggaactgc      4620
     gaagcagcca aaccaagcaa caaatcaatc ggtcaatcca gaatcaacac cgccgcaagc      4680
     tcaaccaggt ctaggaagag gtcgatggag atctcaaagg cctacgaagc aaccaggcta      4740
     tttaaaagac tatcaagttt caacaaaaaa ataggagttg gaaatagata agaactatta      4800
     ttatttttat tttctttttc tcctaaaatt cttttttttt tttttgtgtt atcaagcaaa      4860
     atagttaatc aaatttatta ttatcaaatt atcaaatcaa atcaattaat cgaattatca      4920
     aattatcgaa tcaaatcaat taattgaatt atcaattgat caaattataa attttcaatc      4980
     aaattaaaat tttcaagtgt gtatcaatct tttccgaaga tatcaaattg atctcatcaa      5040
     aactgagttg atctcgtcat tagattgtta aagaaatatt ttttattttt tttgttattg      5100
     tttttttttg tatcgattca aattattgcc tcctagtttt tcctcaagcg ggggagag        5158
//
ID   Gypsy-6_TrVa-LTR repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-6_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-190
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 235-235 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 190 BP; 48 A; 40 C; 36 G; 66 T; 0 other;
     tgtagggttt tatcggatag ttgttagacg tgtattcgtt ggggactata gccctaccta        60
     ggagtcaatc acctgatagg tgaccttgta gatattccat caatatagtt cgttctctag       120
     tcaaccgtaa cgtgtatcaa ttgtctctct ctcttaattc ctaatgtatt cgtataactc       180
     gaccacaaca                                                              190
//
ID   Gypsy-700_AA-I repbase;    DNA;    INV; 6855 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-700_;
KW   Gypsy-700_AA-I; Gypsy-700_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6855
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6855
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to Repbase Update (31-DEC-2018).
XX
CC   A sample sequence, LTRs are >99% similar to each other.
XX
SQ   Sequence 6855 BP; 2461 A; 1212 C; 1346 G; 1836 T; 0 other;
     ttggcgccca acgttaaaaa aaaaaaccaa caattctaat tgctaccatt ggattcaaag        60
     attattatta ttatttctct gttaatttct tattagcatt cagccatttt ttgtacatat       120
     ttctcattta gaaggttttt tgttgcttcc attttttttt tagagtaaga ttgaaatatt       180
     ttcataggtc agtagtgtaa ttttttttat tggattaagt taatcgaaat ttgaactgaa       240
     tttgtagtgg atttattgaa ttcaatgaaa ttatttcttt ggagttgaat agttttgaat       300
     aaacattgta aatattttga tttagggtta ggaaaatttg gggtggtttt gttattttat       360
     ttacttgttt tctgaatttt gctattattt tgtaattaaa tttgaaaaaa aacccgatcg       420
     gcattattat aatttagttt aaattgaatt agcaattaac aagaattatt gaattggaat       480
     caagatggtc agattttata ttttaccaaa tgctgatcat ttaacggaag acgaattgaa       540
     ttttgaactc acacttagga atattcaagt gggagaagat gcgaaattag aagatcggac       600
     aagggcatta agatacgctt ataaaacaga gcggatggaa ccaaagctct atgaaacagg       660
     catttcaata gttgaggaag cgaaaaatct aggaaagact gtcaaagcac taaaaaaaag       720
     tttacgagaa tcattcgatt acgtcattgt ttcacgactt aggcattatt tgattaggtt       780
     gtcctctgca agcgcacaaa ataatgaaga aaacgaatta aaagtagaat gttgcaagga       840
     gattgaagaa attatgagag catacagaca acgtgtaact tatgacccag atcattcaaa       900
     tgacgagaca gaccaagact taggcgatgg tgcgaaaggg ctaaaggatt cttggagaaa       960
     tccagatcca aaagctgttg ttcaatctgc atatcttaat ccaagtggta atgatcaaaa      1020
     agaaagaaga agtaggacag ggacctggcc aaaagtggac atagaaaagg aaagtagatg      1080
     gagggattcg agggcccata gaacttcaga cgacttagga agaaaacaag agagtgaaaa      1140
     cgaatcaaat caagaaaaac gtactcctca gacagtaaaa gagagacaac gaagaagaga      1200
     agacaattca tcgtctaata aagacgggaa gggattagga cgtagaagaa gagataagga      1260
     gcgtaatcat aaaaataggt catattattc tacaactgaa aaatcagact caggagagag      1320
     tgacacaacg ttaaataatc gtaaacgtgg taacaaagga tcacattata gatcaagggg      1380
     aagattatct tcgataacga caaactgtag cagtacagac caggaagaac tagagtggac      1440
     agagagaccc agacagtttc gtagatcaca aacaccacaa acgcattata ggggatatag      1500
     ggatgaattt tatagaatgt cgcgttctag agtagaaaac tgggacataa tcttcactgg      1560
     agactcgaaa tcaatgcagg tggaggattt tttgaatagg gtaaaaaaat tggcaaaaca      1620
     cgaacgtgta agcaaaagag aattacttga taaaattcat tacaaactca aaggggaagc      1680
     cagtgactgg tggttcacca gagaagacca ttgctcgacc tgggaaaagt ttgagtgcga      1740
     aattagattc agatttggga accccaatcg agatcgaggt atacgtaccc agctacgtga      1800
     actaagacaa aaaagagggg agacatttgt ggcattcgtc accgaagtgg aaaaattgaa      1860
     ccaatgtctt aaacaaccgc actcttctag aacgattttt gaaattgtat gggagaacat      1920
     gagaccccac tacaggtcga aattagccac aacgcgcgtg cataatttag aacacttgtt      1980
     ggatctgaat catcgtatcg atgcaaccga tccaaacttg taccgctcta gccaaacttc      2040
     gcgtcacgac gtttataata taaatacaca aaactgtagc tattctgagg cagaatgttc      2100
     gtcaaacgaa gaatacacta taaatgcatt acaacgcaaa cttaaaatta ctagggaaac      2160
     acaaaaatct agttccccta tagatactca aaacacacag tcggcggact caatcaaatg      2220
     ttggaattgc caaaaatcag ggcatcattg gagaacatgc aaagaggtaa agttgatttt      2280
     ttgttacgcg tgtgggaacc tgggtcgtac gacaaaaacc tgtgatcgca accacccaca      2340
     agttggaccg accacccaaa gatttcaata cactcaacag caatcgttaa actagatgcg      2400
     gggtgcacag ttgagaaccc atgcatctcg cacacggtta aagtggttcc aaatcctagc      2460
     aaccgtggaa agttccaaaa atatcaagag actttacata ttaaagtaaa tccaaatgta      2520
     tgtcctaaga tacgggtctc ggtactggac acggatatca ttgccctgct cgattcaggt      2580
     gccagtgtca gcgtgttaaa ttcaacaaaa ttacttgaaa aacacggatt caaattactt      2640
     aaagcaacgg tacttgttag cactgctgat aatacgacac acgaatgcat tggttatgca      2700
     aatataccct atacatttgc tggagccact aaggtaatcc caacaattat tgttccacaa      2760
     ctatccaaaa ctttaatttt aggaatggat ttttggaatt cgttcgggat taggcccatg      2820
     ataaaatatg acaatcagtt agccgaggtc gatctttttg acgttaacgg ccaaccgata      2880
     ggtaacattg taaatcataa ccatcaatcg tcaccggacg taaaggactt agaacccgaa      2940
     attttcttga aagtatgttc gttagaactc acggaaacag agaatatttt aactcacaga      3000
     gcaaagcctg aaagtgacga gtcattagat gtcccgtcgt tagatttgcc acagaatcca      3060
     gaacaagaaa ttgagtcgat tgaaacagaa cacgaattag acgaacagca gaaaaaacaa      3120
     ctaaccgaga cacttaaatg ctttcagtgg acaagcgaaa ataagctggg tcgcactaaa      3180
     ctaatagaac atgaaataga aattatagaa ggggcaagaa tgaaagattt acccatgtat      3240
     agatactcgc cgagtgtgtg ggagaatata gagaaagaac tagaacgata tgaaacattg      3300
     gacgtaatcg aagaatgtac gagcgaattc gccagcccat tggtaccggt gaagaaaaca      3360
     aatgggaaaa tacgggtatg tttagattca agaaaaataa attcagtaac taaaaaagac      3420
     gcgtacccaa tgcgcaacat gaatgaaatt tttcataggt tgcaaaaagc aaggtacttc      3480
     agcataattg acctcaaaga tgcatatttc cagatccccc tgaaggagag ttccagaaat      3540
     tacactgcgt tccgaacccc gaagggactc tttagattta aagttgtccc tttcggactt      3600
     aaaaatgccc cattcaccat gagcagatta atgaacaaag caatgggctt tgatcttgaa      3660
     ccacacgtat tcatttattt agatgatatc gtgatagcga ccgaaaattt ggaagatcac      3720
     ttccggctgt taaaagaggt tgccaaacgg ctagcgaaag caggcttaac gatttctgtt      3780
     caaaaaagtc ggttttgcaa acgacaagtt aaatatctcg gatatttatt gactgaaaat      3840
     ggattggcta tagatagtac taaattagca ccaatactta attatccacg ccctaaatca      3900
     atcagagacg tacgtcgtct catgggatta atgggattct atcaaaaatt cattaataat      3960
     tatagccata tcactactcc cataacagac ctgcttaaaa aatcgagaaa attcaaatgg      4020
     acggacgaag cagagcaggc tttagaagaa ttgaagtcgg tattaacgtc ttcacctgta      4080
     cttgcaaatc ctagatacga ccttcccttt gtcattgaaa ccgacgcatc gcagcttgcg      4140
     gtcggagcag ctctgctaca ggaccatccc gaaggcaaac gtataattgc atattttagt      4200
     aaaaaattaa cgagcacgca gcgcaagtac gcagcaacag aaaaagaatg cttggctgtg      4260
     ctgttagcaa tagagaactt tcgccattac attgaaggca ctaatttcaa agtaattaca      4320
     gatgctaaga gtataacctg gctatttacg atcacggcag cgaatgggaa ctccaggcta      4380
     cttcgctggg cccttaaact ccaatcatat gattttagta ttcaatatag aaagggcaag      4440
     gataatgtcc tcgctgattg cttatcccga atcgacatga ttcaaatcat agacaatgaa      4500
     tatttagaac tatacaataa aattactaat aatccagaaa agtttcaaga tttcaaaata      4560
     gtagggaata aaatatttaa atttgttaac aatgcagcca aaattgaaga caggcgattc      4620
     cagtggaagt actatccacc taaacaagaa aggaacacaa ttattcaaac ggctcatgaa      4680
     tcagctcatt tagggtatga caaaactata gcgaaattaa aagaaaggta tttttggcct      4740
     ggaatggccc tcgaaacaaa gagattttgt aaagcatgca tgtcatgcaa aacgtcaaaa      4800
     agtagtaaca ttaacaatgt tcccccgatg ggaacccaaa aacaacactg cgaacaacca      4860
     tggcagtttg taaccttgga ttacttaggt ccattcccac cttcgggaac agcgcgtaac      4920
     acttgtcttt tagtcgtcac agacgttttc acaaaattcg ttcttgtgca accatttaaa      4980
     caagcaacag cctcatcact tgttaaattc ttggagcagt ctatattttt actttttggc      5040
     gttccgcaaa tcctattaac agacaatgga agccaattta catcaaaact tttcaaggaa      5100
     ctgctaagcc attacggaat tactcattgg ctaacacctt catatcaccc tcaagttaac      5160
     aattcagaaa gagttaacag ggtgataaca gctgcaattc gagctacaat taaatctagc      5220
     cacaagacgt ggactgataa tatacaaaat atagccaatg caataagaaa ttcaactcac      5280
     gaatcgacga aacacacacc ttattttctc acgtttggac gaaatatcgt ctcagacggt      5340
     cgagaatacg aaacttttac gggaactgat aaaaatgcac acacaatttc aactgaagag      5400
     aggaatcgat tatacgaaca agttcgtaaa aaccttcaag atgcgtatca aaaacaggca      5460
     aaatattata atctaaggtc taacgctaag gcaccaaaat accaggtcgg cgaaaaggtt      5520
     ctcaagaaaa ccaccttcct ctcagacaag gataagaatt tctgcgctaa gctggcaccc      5580
     agatacacag aagcaatagt tacacaagtt ttaggagaca gctacgagtt gaccgatgca      5640
     acgggtaaac gattgggaat ttatcacgct acctttctca aaaagttgta gaattaaaac      5700
     acgaaaaaaa ggctatgaat ttatcttcac gaaaattaca ataagctaaa aaaaaaaaaa      5760
     cacgtatgaa attgatttca ttaaaccggt taaacaacat agatatgtaa ataaatcttc      5820
     tgtaaatagt acacaattag cgctttaatg ctattcgaac actttcttca tttccagaat      5880
     tattagatgt aggtctgttc gtacaaagtt cgcagcataa gtaggtgatg taaacaaagc      5940
     agcatagaag ttcactcatc tctgcctgtt tgtatgcgta aatcatcgac atgcaccttt      6000
     ccttctccgc acagtagcat aatgaaagcg gttggaattg ataacttcca atcatatttt      6060
     ttttcctctt cactgaaata gaaagtaatt agcttagtaa atgagataaa cttaaataga      6120
     aagtaactcc ccaggtttaa tcgatgagtt gaagatagtt tttcgaagaa atccaaggct      6180
     ctcaaagcgg acacgttcct tttttatgtt atgcttttga atgacgtttc gtttcttaac      6240
     gtcacagtcg gtgttggttt tcatcgctct gtcagatgta atgcaggggt gaacacaatg      6300
     ctgtcagttt ggacatgcga tgttttttcg agctctcagt ctgtcagaga cagtttaagt      6360
     aacaatctat gtggtggtca acataaattg atgaaataga atgttatggt ttcagttcgt      6420
     tagttaaaag ggcaggacgt caacaaacta gtcaatttag ggttgatacg gttgataaat      6480
     cgcaattttt tatagcaaga gtatgtgtgc cattacatgg gtcgataata atcgatgaat      6540
     ggaatatact cagtgctgag tttacgttac gttttatgtg tttattgaat tgtttatgaa      6600
     tctacagtgg cattggaaaa ataatcaatg gagtagataa tatatatagt atctgaacaa      6660
     cgtcagatga acagcattgt ttggccccgc gttaaactga aagagaaatg ataataatct      6720
     ggtgaagcaa ttggaatcgt ataaaaacaa actatatttt ttatagatat aaattgcgtt      6780
     gaacaaaatg tttggagtta tgaaaatttg atcaatctca aattgatcaa attttcataa      6840
     aactgggtcg tgtga                                                       6855
//
ID   Gypsy-700_AA-LTR repbase;    DNA;    INV; 1510 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.04, Created)
DT   31-DEC-2018 (Rel. 26.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-700_;
KW   Gypsy-700_AA-I; Gypsy-700_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1510
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1510
RA   Bao W.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(4), 2115-2115 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1510 BP; 421 A; 344 C; 303 G; 442 T; 0 other;
     tgtaacgtta tctggaacgt ttgttagttt aggaagactt tctctgagaa ataattagtt        60
     cattgagtaa aaattattct tgccgcggat ttacaataat tatacagcaa atttagaatt       120
     ttaagaacca tttatatatt agcctcaaag tttaccataa aagcttgcct tgagctttgt       180
     actaaaaata gttaagagat taaacgtaga tggcatacga aacaggaata aaatcaactg       240
     tggtacttgt ctaaactttt aagttgaata gtattagtga aggtcagaat taatgagaca       300
     tcacttttgg agggtcttaa actcatctgc tggactgaat cccccatttt agaaagtcgt       360
     tggctagagt acagaagcta gtcactgtgt ctctaccttt taatttctga gtttaaggtg       420
     tgccttcatt gattttttat aagttaaaat acagttaatt attagtgacg tgtgtgcagt       480
     atagtgaata atttaataag ttgtgttctt tttcccaatt aaatagtttt tttggaagta       540
     taccacaagt ggcgaaagct ctgcgctctt gtgtaattga tcaaaatcta caaaggtaaa       600
     gatataaaaa ttcattttct tttatatttg tactaattcg tttgtcgttg gacctcagcg       660
     tccaaccgac gcttttttgt ccggatcaaa ggtctttgga cctctacacc cgccattttg       720
     ttggcgcact acacgtggaa cactccgtcg gtaccaactc gtgaaggccc gccagttttg       780
     gcagtcaaac ggggctgagg aaaacccatc cggcctgctt gcgcctcgta gtgatctggc       840
     agagtaccgg agccgccgac gccctctccc cgcaactcta catcggccaa aagtccactg       900
     agcgtaccag acagcaccgg ccctatagat gcggtccccc tagccagtgt gagaccccgc       960
     tacgtctctg cgccactgcc tgaatcagcg gtcgccgttg gcatgcccct cggtcggtga      1020
     accgcatgac gcccagcata aaaccctgcg caggttagtg tatcatggcc atgatgaaca      1080
     cacaacatac aacacataca cagacacaca cacactctat ctaaaacgaa aagatgaata      1140
     tacatgcaaa atgaatttaa gctaaacata atctctacct tcatttatac tgccagagcc      1200
     ctgtggtatc tctagtccgc ccgggtgaac actccacctc gctatactgc caccacgtgt      1260
     gcgttcggat attgtaatag gatttctcgt gcactgtagt ttattttatt caatttcgtg      1320
     gtcatccaca tttgattatc tgatctgcct ttgcggagca accgttcgaa caccttgaga      1380
     atttcgctca tgctaataca gcttagtcgg gcaacattat atcacacgac cagtggcctc      1440
     tcttcatcga gagtggcgct aaagccactg tgtttacaga agttcccaaa cgtttggacg      1500
     aacggttaca                                                             1510
//
ID   Gypsy-70_AA-I repbase;    DNA;    INV; 5332 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_AA_;
KW   Gypsy-70_AA-LTR; Gypsy-70_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5332
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions 3998182 3992851.
XX
CC   Positions [4170-4640] - Integrase core
CC   'CTTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(975..3257,3261..5168)
FT                 /product="Gypsy-70_AA-I_1p"
FT                 /translation="MSKVNVTTTIEPYRKGTPFGEWVERLEFYFSLNNVSP
FT                 GDKKAYFITLSGPVIYHELKLLFPTSNLTDVSYDDMITKLRTRLDKTESDI
FT                 IQRLKFNNRVQQPDETVEDFVLSVKLQAEFCSFGDFKDLAIRDRILAGVRE
FT                 KSLRERLLNEDKLTLAIAERIIATWELAGKNAKNLNNNDDDQYGRIASLAP
FT                 ASKVGTSMRKLLAVYNGGEMESSPRVPVRDRLGYRPYSRRVEDTTRYKKQS
FT                 WRETEKFKPGQWRQKPSYADMICNFCGAKGHIKRKCFKLKNMRRDTVNMLN
FT                 DYEPEASEDGHIANLLSRMRTEESDSDADDRDSGDLTCMMVSSINRIRDPC
FT                 LVELMVEGKMLQMEVDCGSSVSVIGKDHYFSMFSKPLEKCNKQLIVVNGEK
FT                 LKIEGEAIVSVKFNGTEAKLKFLVLNTSHKFIPLFGRTWLDVFFSKWRHFF
FT                 SSTLTINNMIESDNNAEVENIKRVYKDVFIKDFSTPIKGFEAELVLKSDVP
FT                 IFKKAYDVPYRLRDKVVDYLNKLEKEKVITPIKTSEWASPVVIVMKKNNEI
FT                 RLVIDCKVSINKVIIPNTYPLPTAQDLFAKLAECKIFCALDLEGAYTQLAL
FT                 SDKSKHFMTINTIKGLYTYNRLPQGASSSASIFQNVMDQILRDIDHVHCYL
FT                 DDVLIAGKNIDECKAKLKLVLERLREANIKVNWEKCKFFVTHLDYLGHVLS
FT                 ENGLLPCQSKVATIQKAKIPKNTTELKSFLGMINYYNKFIPHLSAKLSYLY
FT                 NLLKNGVKFIDNNCNKAFEESKQALLSAQFLEFYDPKKPIIVVSDASGYGL
FT                 GGVIAHIVDNVEKPICFTSFTLNDAQKSYPILHLEALALVCTIKKFHKYLY
FT                 GQEFTVYTDHKPLVGIFGKKGQHSIYVTRLQRYILELSIYDFTIQYRPSSQ
FT                 MGNADFCSRFPLEQSVPDEFDIEHIRSINFSNDFPIDFKVVAKVTKSDEFL
FT                 QNIVFYMKNGWPENLKKCYVDVFSNQHDLEVVDECLLYQDRVIIPQVMQTD
FT                 VLKLLHANHAGMVKMKQLARRSVYWFGINKDIEKFVPLCEECNSMAIINKP
FT                 AEKFQWIPTSRPFSRIHIDFFHFNHHTFLLIVDSFSKWIEIEWMKGGTDCS
FT                 KVLKRLVAFFARFGLPDVLVSDGGPPFNSHTFVSFLRKQGINVLKSPPYNP
FT                 SSNGQAERSVRTVKEVLKKFLLEPEMLKLEMEDQLNLFLINYRNSCLTNDG
FT                 EFPSEKIFSFNPKTIMDLLNPKKQYKNHLKPQPSDDRTVSNDTTSTNTKLH
FT                 DSIDDLMAGDVVWYKNNNPHHRARWVKATFLKRFSKNIFQVQTGSVRLMAH
FT                 RNQLRVASEGMRLRPNLTLSFSNRDGVLPVSSENEDPRGFAESVPDASEKS
FT                 RKRNRPKALLDLTPELRRSKRKRTAKADSDFVYH"
XX
SQ   Sequence 5332 BP; 1715 A; 891 C; 1140 G; 1586 T; 0 other;
     gtttggcgac gaagataaat tttcctctgt agtttttcct caagtggtcg aagattcata        60
     gtggcagcca cacaagtgaa cttagtgtgg atataatcac gtttttcatc tggaagacga       120
     cggcccggcg ctgcaggtga taaagatcat ccaaaggtca gccacaattg agcatctaca       180
     tgattttgga ataacacacg aattggtaaa atctaagcca catcggtgga tgcggtaagt       240
     taaggtgctt aagtgagtat aattgtatgg attgcacgat ataagtgaaa tttagtaatt       300
     gctagaattc caatcaattt cccatatttt ccgccattgt tttaattggc atcacccttt       360
     tgttcttaat tacaatatat ctggcagcca ttctcttaca gcaacgaaaa ggccgtttcg       420
     attcgcaggt gcgaacaaga caacaatcta ggatcgaaca aaacattgtt ttgtttgaca       480
     gcttttatca aaggaatctt ttgatgttta ttcttttatt tgcaaagttc taagagtgtt       540
     ttatcttctc aaattaaact ctagattcga taagtgagtt gttggcgata ctgtggatcg       600
     aaggttttcg aacaaggcgt ttcgaagtgg ctatccaaca cggcctggaa cgtgtggaac       660
     agtggtggca caagcgaaga tttttaacga atccgaccgg taactgcaac tccgaatcta       720
     tcagcaggtt agcaggaagt ggccaacttt tcggattaaa ccggacgtga cagtgcgttt       780
     tggaagctgg caaggatcca tcacaattcg tcgttccgtt tgccctaccg ttggttgggg       840
     tgagtttgga ctgtttcggt gagtcttgcc tttattcttt tttatattgt gctgatttgg       900
     gaaattgttc agtgtttgca gagttatatt gccattgttt tttctttcaa catttactat       960
     ttctctggtt gagtatgtcc aaagtgaacg ttaccacgac tattgagcca taccgcaaag      1020
     gcacgccatt tggcgaatgg gtcgagcggt tggaatttta tttttcattg aataatgtct      1080
     cacctggaga caaaaaagcc tactttataa cccttagtgg ccctgtgata taccatgaat      1140
     tgaagctttt attccctacc agtaatttga ccgacgtgtc atatgatgac atgattacta      1200
     aattgcgtac acggttggat aaaacggaat ctgacatcat tcagaggttg aagtttaaca      1260
     accgtgtaca gcaacctgat gaaacggtcg aggactttgt tctctctgta aaattgcaag      1320
     cagagttttg ttctttcggg gattttaaag accttgccat aagggatcgg attcttgcgg      1380
     gagtccgaga aaaatccctt cgtgaaagac tgctaaatga agacaaactc acacttgcga      1440
     tagcagaaag gataattgct acatgggaat tggccgggaa aaatgccaaa aatttaaaca      1500
     ataatgacga cgaccagtat ggtcgaattg cttctctggc accagcttca aaagtaggaa      1560
     ctagcatgag aaaactttta gctgtttaca atggcggaga aatggaaagc tctcctaggg      1620
     ttcctgttag ggacagactt ggttatagac cgtattccag gagagttgaa gataccacac      1680
     gatacaaaaa acagagctgg agagaaacag aaaaatttaa gccaggacaa tggaggcaga      1740
     aaccaagtta cgcagatatg atctgcaact tttgtggagc aaagggacac atcaagagga      1800
     aatgttttaa actaaaaaac atgagacggg acacagtcaa catgctgaac gattatgagc      1860
     cggaggccag tgaagacgga catattgcga accttcttag ccggatgcgg acggaggagt      1920
     cggatagtga cgccgatgat agagactcag gtgatttgac ttgcatgatg gtatcttcca      1980
     ttaataggat tagagacccc tgtcttgtag agctaatggt tgagggcaaa atgttgcaaa      2040
     tggaggttga ttgcggatct tccgtatcgg tgattggtaa agaccattat ttttctatgt      2100
     ttagtaaacc tttagagaaa tgcaataaac agttgattgt agtaaatgga gaaaaactta      2160
     aaattgaagg tgaagcgata gtttcggtaa agttcaatgg aactgaagca aaattgaaat      2220
     ttttggtttt gaataccagt cataaattta tacctttatt tggaaggaca tggctggatg      2280
     tatttttctc taaatggaga catttttttt caagcacatt gactattaac aacatgattg      2340
     aaagcgataa taatgcggag gttgaaaata ttaaacgtgt atacaaagat gtttttataa      2400
     aagatttttc gacccctatc aaagggtttg aagccgaatt ggtactaaaa tctgacgttc      2460
     ccatttttaa aaaagcctat gatgttccat acaggttaag agacaaagtt gtggattatt      2520
     tgaacaaact agaaaaggaa aaagtgatta caccaatcaa gaccagtgag tgggcgtctc      2580
     ccgtggtcat agtaatgaaa aaaaataatg aaattagatt ggttatagat tgtaaggttt      2640
     caataaataa agtaattatt cctaatactt atcctcttcc tacagcacaa gatttgtttg      2700
     ctaagctggc agaatgtaag atattctgtg cattagattt ggagggagca tacactcaat      2760
     tggctttatc ggataagtct aaacatttta tgaccataaa cacaatcaag ggactatata      2820
     cttacaatag attaccacaa ggggcttctt cgagcgcatc gattttccaa aatgttatgg      2880
     atcaaatttt gagagatatt gatcatgttc attgctattt agatgacgtc ctcattgcag      2940
     gaaaaaatat agatgagtgt aaggcaaaat taaaacttgt gcttgagaga ttgcgagaag      3000
     cgaacataaa ggttaactgg gaaaaatgta agttttttgt tacacattta gattatttag      3060
     gacacgtatt gagcgagaat ggtttactgc cttgccaaag caaagttgca acaatacaaa      3120
     aggccaaaat tccaaagaac acgacagaac taaaatcatt tcttggaatg ataaattatt      3180
     ataacaaatt cattccccat ttgtcagcaa aactttcata tctttataat ttattaaaaa      3240
     acggtgtaaa atttatttga gacaacaatt gtaataaagc gtttgaagaa agtaagcaag      3300
     ctttgttgag tgcccagttt ttagagtttt acgatccaaa gaagccaata attgttgtat      3360
     ctgatgcatc gggatatggt ttagggggcg taattgctca tattgtcgat aatgtagaga      3420
     aacctatttg tttcacatcg tttacattga acgacgctca aaaatcgtat cccattctac      3480
     atttagaggc attagctttg gtttgtacca tcaaaaaatt ccacaaatat ttgtatgggc      3540
     aagagtttac tgtttataca gaccataagc ctttagtagg tatttttggc aagaaaggtc      3600
     aacattcaat atacgtaaca aggcttcaac ggtacatttt agaattatcc atttatgatt      3660
     tcactattca atacaggccg tcatcccaaa tgggaaacgc ggatttttgt tcgagatttc      3720
     ctttagagca gtcagtacct gatgaatttg atattgaaca tataaggagc attaatttta      3780
     gcaacgattt tcctatcgat tttaaagtgg ttgcgaaggt gacaaaatca gatgaattct      3840
     tgcagaatat tgtattctac atgaaaaatg gttggccaga aaatttaaaa aaatgctatg      3900
     tcgatgtttt ttcgaaccaa catgatttgg aggtggttga tgagtgtttg ttataccagg      3960
     atagggtaat aataccacaa gtgatgcaaa ctgatgtttt gaaactgtta catgccaatc      4020
     atgcaggcat ggttaaaatg aaacaacttg ctagaagatc agtgtactgg tttggaatta      4080
     ataaggatat agaaaagttt gtaccactat gtgaggagtg taatagtatg gcaattatca      4140
     acaaacctgc ggagaaattt caatggatac caacaagcag accgtttagt agaatacaca      4200
     tagatttttt tcacttcaac caccacacat ttttacttat agttgacagt ttttcaaagt      4260
     ggatagagat tgaatggatg aaaggtggta ctgattgcag taaggtttta aaaaggttgg      4320
     tagcattttt tgctcgcttc ggattaccgg atgttttggt atccgatgga ggcccacctt      4380
     tcaactccca tacctttgtg agctttttga ggaagcaggg cattaatgtg cttaaaagtc      4440
     ccccatacaa tccctctagt aacggacagg ctgagcgttc agtgcggaca gtaaaagaag      4500
     ttttgaaaaa gtttcttttg gaacctgaga tgttaaagtt ggaaatggag gatcaattga      4560
     atttgttttt aataaactat aggaacagtt gcttgacgaa tgacggcgag tttccgtcag      4620
     agaaaatatt ttcttttaat ccaaagacaa taatggactt acttaatcca aaaaaacaat      4680
     acaagaatca tctaaaacca cagccaagcg atgatagaac tgtgtcaaat gacaccacaa      4740
     gtactaatac taagttgcat gactctatag atgatctgat ggcgggtgat gtggtttggt      4800
     acaaaaataa caatccacat caccgcgcac gctgggttaa agccacattt ctaaaacgtt      4860
     tttcgaaaaa tatcttccag gtgcaaactg gaagcgttcg cctaatggcc catcgaaacc      4920
     agctaagagt agcttctgaa gggatgcgtt taaggccgaa ccttacatta tccttttcaa      4980
     atcgtgatgg tgtgctgcca gttagcagtg agaacgaaga ccctagaggt tttgcggagt      5040
     cggtcccaga cgcatcggag aagagccgaa aacgaaatcg tccaaaggca ttactcgatc      5100
     tcacacccga gctaagaaga tcgaaaagaa aacgcacggc caaagccgac agtgattttg      5160
     tttatcattg atcaatgcgc ataaagtgtg atctgaattt tcaaaatgaa ttttctgaat      5220
     agttagtctt aagtttaaac tttggattgt tttattagtt taagtcaata gcatgcatag      5280
     aattctaaat ggaattttct gaaatatatc cctttcctta aaggggaaga ac              5332
//
ID   Gypsy-70_AA-LTR repbase;    DNA;    INV; 191 BP.
XX
AC   supercont1.22;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_AA_;
KW   Gypsy-70_AA-I; Gypsy-70_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-191
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.22; Positions 3992850 3992660.
XX
SQ   Sequence 191 BP; 68 A; 51 C; 27 G; 45 T; 0 other;
     tgatgtatcc tgtcaaatga cagctctgaa aaagagacaa catcaactgc tacacatcaa        60
     gctatctcat tataaagctt tcctgaaaat aaaagagcta tgagccggta gttctatttc       120
     ggctatcaac cagacaacaa ctctctacaa accctcccta atccgaagtg cccctaaacc       180
     aggacattac a                                                            191
//
ID   Gypsy-70_CQ-I repbase;    DNA;    INV; 4457 BP.
XX
AC   AAWU01039681;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_CQ_;
KW   Gypsy-70_CQ-LTR; Gypsy-70_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4457
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 519-519 (2011).
XX
DR   Genome; AAWU01039681; Positions   11609    7153.
XX
CC   Positions [3439-3795] - Integrase core
CC   'CTGGA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           226..3795
FT                 /product="Gypsy-70_CQ-I_1p"
FT                 /translation="MPDDEKKPGVSSASPSGADKRKGKFPVFVPGHNVNSY
FT                 MQTVDMYFTLNKTPEDEKKLEFITSVGQDTANHISGSFKPTKIVDKTYDQI
FT                 IEKFKQLYEEKKNVFAERYRLITRKQALGESLDDFAIDLQDIVEHCGVKTD
FT                 TEAILVQSIFVAGLKNDSTREAMLRDGNEKLDLAQLLEKAKGLEVATRESR
FT                 KMSQNEFLEVNYVDRGGMHVGHSRNVVKRGKFGEAAASTSKNSDLYSHRGT
FT                 FKPSSATVCYNCYNKGHLSYDCPFPKAKKPKSSVPPQRNAGYRKRAFEERI
FT                 NQLTAEMEQLKSSLQDDLELSEKLSETESEEDSTNFVNNILLGESSTAPAF
FT                 VKLKINGKIHTMECDTGACATICSFQTYYENFSKQTLSPLNKTFNVISGDK
FT                 VSVLGTLPVKVQLKDKIVELTLVVIDSQKEFVPLIGRDWLNIIWPNWRKSF
FT                 ALNSVKSESREEWTKHVVNNLKREFYKAFDEDLTQPIKDVVVDIKIEDNAK
FT                 PFIHKPYTVAFKHKDKVAKYLDDLETKGIITKVEYAEWASPIVVVVKPNKT
FT                 DIRICMDGSKTVNPHITTHHYPLPLIEELITNKSGARVFALIDLRGAYQQL
FT                 VVSEQTKKLLVINTHKGLYAFNRLPFGVKPAATLFQCAMDNILNGIPNVQA
FT                 YIDDILVWANSDNELLGRLKVVLKKLAEHNVKINTDKCKWFVPQVKYLGHI
FT                 LSEAGVSPNPEKVEAITAVPVPETKTQLKAFLGMITFYNKFVSKLNLLLTP
FT                 LYNLLTKDAIWNWTTQCQTAFENSKRAICSAQILTHFDPTKLITVTCDASD
FT                 EGISGVLSHNIMGKEKPVFFISRRLSKAERKYPILHREALAIVFSMEKFYK
FT                 YVLGQKVLIVTDHKPLVGVFDNKKNAPIVIANRLERYFSRLSIFEFTIIYK
FT                 PGKDNHVADCLSRLPIQQQICQADLDESKRSSPNCLNFLVENHEFNLNAKL
FT                 IAEQTKHDPILSQIIQFIENGWPSRISCKSVKNFYSKKHELNIEANCLIFR
FT                 NRVVLPTSLKMYALQLLHANHRGIQKMKQLSRQFVYWEGIGVDIEVFANSC
FT                 KICQLKGIDRKPQIYGNWPLASTTFERVHIDFFQKYNRTFLILVDAHSRWV
FT                 EIIRMNKTTAEEVAQELDTIFATFGFPGSMVSDNGPPFSSQKFSSFCKARN
FT                 IEHIFSPPYHPASNGLAERAVQTTKAFHRYR"
XX
SQ   Sequence 4457 BP; 1592 A; 828 C; 890 G; 1147 T; 0 other;
     ttctggcgac gaggattaaa atcaaccgag tgtgataagc tcaactgaat ttagataagt        60
     tgcgtgcttt gaaagtgggg gataagagta acctgtggtt ccacgtggtg gttgattaac       120
     agtgcacgtg aacgccagtg aaaagcgtta gctacgtgac cagcgagaaa ggggcgtgaa       180
     agtttcccgg aaaattaaaa aaaaaagtgt aaaattgatt taaatatgcc agatgacgag       240
     aaaaagcccg gagtgtccag cgcgtcacct tcgggagcag acaaaagaaa aggaaaattc       300
     cctgtgtttg tcccggggca taatgtgaac tcatacatgc agaccgtgga catgtacttc       360
     actttgaata aaactccgga agatgaaaaa aaattagaat ttattacaag tgtgggtcaa       420
     gatacggcaa atcacataag tggtagtttc aagccgacaa aaattgtgga taaaacgtat       480
     gaccaaataa ttgaaaagtt caaacaatta tatgaggaaa agaaaaacgt gtttgccgag       540
     cgatatcgat taattacgcg aaagcaagca ttgggcgaat cgttggacga tttcgctatt       600
     gatctacaag acattgtgga gcattgtggt gttaaaacag acaccgaagc aatcctagtg       660
     caatctatct ttgtggcggg gttgaagaac gatagcactc gggaggcaat gttacgcgac       720
     ggtaacgaaa agcttgattt agcacaattg ctagaaaagg ctaaagggct agaagttgcg       780
     acacgtgagt cgaggaaaat gtcgcaaaac gaatttctgg aagtgaacta tgtggatcgc       840
     gggggcatgc acgtagggca ttcacggaac gtggtgaaaa gaggaaaatt tggggaagcg       900
     gctgcttcca ccagcaagaa tagtgacctg tacagccacc gtgggacgtt caaacctagc       960
     agtgcaactg tatgctacaa ttgctacaat aagggccatt tgtcgtatga ttgcccgttc      1020
     ccgaaggcca agaaacctaa gtccagtgta ccaccacaac gaaatgcggg gtacaggaag      1080
     agagcattcg aggagcgaat taatcaactc acggcggaga tggagcaact caaatcatct      1140
     cttcaagacg acctggagct ttcagagaag ctttcggaga cggagagcga ggaggattct      1200
     acaaactttg ttaacaatat acttttgggt gagtcaagta cagcaccagc ttttgtgaaa      1260
     ttaaaaataa atggaaaaat tcataccatg gagtgcgata ctggtgcttg tgctacaata      1320
     tgttcatttc aaacttatta tgaaaatttt tccaaacaaa cattatcacc actaaataaa      1380
     acattcaacg ttatatcagg tgacaaagta tcggtattag gtaccttgcc tgtaaaagtc      1440
     caattaaagg acaaaattgt tgaattaacc ctagtagtga tcgattccca aaaagaattt      1500
     gtgcctttaa ttggccgaga ctggctgaac attatttggc caaactggag aaaaagcttc      1560
     gctctcaact cagttaaatc tgaatccaga gaggaatgga ccaaacatgt ggtgaacaat      1620
     ttaaaaagag agttttataa agcttttgat gaggatctca cgcagcccat caaagatgtt      1680
     gtagttgata ttaaaattga agataacgct aaaccattta tccacaaacc ctatacagtg      1740
     gcattcaaac acaaagataa agtagctaaa tacttagatg atcttgaaac aaaaggaatt      1800
     atcacaaaag tagaatatgc cgagtgggct tctcccatag tagtggtggt gaaaccaaac      1860
     aaaactgaca tcagaatttg tatggacggt tctaaaactg ttaaccctca tataacaaca      1920
     catcattatc ccttgccgct catagaagaa ctgattacta ataaaagtgg agcaagagtt      1980
     tttgcattga ttgatttacg aggcgcatac caacaacttg tggtttcaga acaaacaaaa      2040
     aaattattag taattaacac ccacaaaggt ctttatgcgt tcaaccgact acctttcggg      2100
     gttaaacctg cagctactct tttccaatgt gcaatggata atattctcaa tggaattcca      2160
     aatgttcagg cttacataga tgacatcctt gtatgggcaa attcagataa tgagttactt      2220
     ggtaggctta aagttgtgtt gaaaaaatta gctgaacata atgtaaaaat caacaccgat      2280
     aaatgcaaat ggtttgtgcc ccaggtgaaa tatttgggcc acattctctc ggaggcagga      2340
     gtttcgccaa atcccgagaa agtggaagcg ataacggccg tgccagtgcc agaaaccaaa      2400
     acacaactaa aggcatttct cggcatgata acattttaca ataaatttgt gtcaaaactt      2460
     aacttattac taacaccact atataacttg cttacaaaag atgcgatatg gaattggaca      2520
     acacagtgcc aaaccgcatt tgaaaacagc aagagagcta tctgtagtgc acaaatactt      2580
     acacacttcg atcctaccaa gcttattact gtaacgtgtg atgcaagtga tgagggcatc      2640
     tctggggttt taagccacaa cataatgggg aaagaaaagc cagttttctt tatttcgaga      2700
     agattatcca aagcagaaag aaagtatccc attttgcaca gggaggctct cgctattgta      2760
     ttttccatgg aaaaatttta caagtatgtt cttggtcaaa aagttttgat agtcactgat      2820
     cataaacctt tagtgggtgt tttcgataat aaaaagaatg caccgatagt aattgcaaac      2880
     cggttagagc gctatttctc acgattgtcg atttttgagt tcaccatcat ctacaaacca      2940
     ggcaaagata atcatgtagc agattgtctc tctaggttac caatacaaca acaaatatgt      3000
     caagctgatt tagatgaaag taaacgaagc tctccaaatt gtttgaattt tttagtggaa      3060
     aaccacgagt ttaacctgaa tgccaaatta attgcagagc agacgaagca tgatccaatt      3120
     ctctcccaaa ttatccaatt tatcgaaaat ggatggccat ctagaatatc ttgtaaatct      3180
     gttaaaaatt tctattcaaa aaaacatgaa ttaaatatcg aagcaaattg tttgatattc      3240
     aggaacaggg ttgtattacc aacatcatta aaaatgtatg cacttcaact actgcatgca      3300
     aatcacagag gaattcaaaa aatgaaacaa ttatcaagac aatttgttta ttgggaggga      3360
     attggcgtag atattgaggt ttttgctaac tcttgtaaaa tttgccaatt aaaaggaatt      3420
     gatagaaaac cacaaatata cggcaattgg ccattagctt caacaacatt tgagcgagtg      3480
     catattgact ttttccagaa atacaatcgc actttcttaa tattagtaga cgcacactca      3540
     cgatgggttg aaataataag aatgaacaaa acaacagcag aagaagtggc ccaggaactt      3600
     gacacaattt ttgccacctt tggttttcct ggctccatgg tgagtgacaa tgggcctcca      3660
     tttagtagcc aaaaattctc atcattttgt aaggcaagaa atattgaaca tattttttca      3720
     ccaccgtacc acccagccag caacggactt gctgaaagag cggttcaaac cacaaaagcc      3780
     tttcatcgtt acagatagac aataatattc gcacatttct acatcatcat caccaaactc      3840
     ccacaactgg agaccgaatt attccaaacg agagagtttt caactttatt ccacgttctg      3900
     aacttataaa tttaagagaa aagaaaacag ttttctgcac gaattacgaa aatgaaaaca      3960
     ctagaaaatt taagaaaaac gataaggtaa tttacactta taagatgaat ggtaagaagt      4020
     tcactcatga agctgtaatc ataaagccaa tgtcagaatt aatttttctc attcaaattc      4080
     agggaaacat tcgcaaagct catgtaaaca aattaaaaag aatcccacaa gttccattta      4140
     cattaaaaat caggccagat aattctactc ccatacaccc aaacaacaca tccccaacat      4200
     tgtcaacaaa cagttctgat gaagcagaca acacaaaaga ttcgtcagct gatgtagagg      4260
     caaacaataa agaatcatca actgaagagt cactttcatc agctgacgaa gaaacagaac      4320
     caaaacaaaa agacaaacca attcggcgat ccaaaagaag caaaagttct aggcacagct      4380
     ctctcaattt gaaagttctt ggtaaaaaga aatgatcaag gttgtcgaat tagggttttg      4440
     tcctaaaagg ggggaga                                                     4457
//
ID   Gypsy-70_CQ-LTR repbase;    DNA;    INV; 197 BP.
XX
AC   AAWU01039681;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_CQ_;
KW   Gypsy-70_CQ-I; Gypsy-70_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-197
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 520-520 (2011).
XX
DR   Genome; AAWU01039681; Positions    7152    6956.
XX
SQ   Sequence 197 BP; 71 A; 43 C; 44 G; 39 T; 0 other;
     tgagaggcga gagaagaaga gagcaatctg ggccgaacac gatactactc tcgggtagta        60
     gaaccgaacg ttaactatta ataaagcagt ctcaacttga actacaacca cgaaggacgt       120
     attttgttaa gctatccgaa aagcactctt taaacccaaa cccaagataa gctacggtcc       180
     gagttaagga cgtagca                                                      197
//
ID   Gypsy-70_DEl-I repbase;    DNA;    INV; 6942 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_DEl-I;
KW   Gypsy-70_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6942
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7033-7033 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6942 BP; 2949 A; 1081 C; 1043 G; 1869 T; 0 other;
     ggcgcccaac gtggggccgc gtcataaaaa gttccaaata attatttaat gaaaaacaag        60
     ttaaatataa acggagctcg cgcggccaat aactcaacat ttttagtgga aaaattaaaa       120
     aatccatcac cagtcgacga cacctaacat agtgacagtg atcgttgttc aaaaattaaa       180
     tggaaatcaa ttaatgtaat aatccattta aacccggaaa tatattaaag gtggaccgaa       240
     agattaatta ttaacacaaa taaaaaccaa aactaaacta aaaatacagt ggataataaa       300
     aaaaaaaaaa gaaacaataa agacagaaaa atctaacaaa gaaaaactaa gtgaattaaa       360
     aaaatcatcg aataaattat aaaaaataaa gggctgtagg gcaatccctc gccaaactca       420
     acacgataac aaataaataa aatatataag aaggaaggaa gggctgaagg gcattccctc       480
     gccaaaatca acacaaaaac gatcaagcaa actaaggaag gaagatcaac ccacaacctc       540
     acagaaggaa aaccccttcg ggacagtttc gtgaggaatt aatttaaaat aataaaaaat       600
     taaaaatttt aatttaagtt cagggaattg agaaaaataa aatagttgat aaaaacaata       660
     agatagattc gtgaattaaa agaatatcat cgagaaacaa tctggaggat ttaatagatt       720
     gctttggtga attaaaatta aaaatggcaa ccggaggttc agcaccaaat ttctctgcag       780
     gtagtatagc cacagctggc ggcctaacag tggaattaat taatagatta ataaatgttc       840
     agttgaatga agtgagcagg aaaatagaag gtttagaaaa tagattagcc acagatgcaa       900
     acactgtaga ggattataaa atacaaacaa tcgacccaac tataaagtgc gatacaacgc       960
     ttgaagtggt aaaatcttta ccaaaattca ccggggaacc aacacaatat gtaggttgga      1020
     gggaagctgc ggaaactgct atgagtcttt ttaaaattca aagcgaacaa tactttattg      1080
     ctttaacaat tttacgaaat aaaattatgg gagctgccca tgatgctctt accaatcatg      1140
     gcaccgtttt aaattttcaa gcaatcttat ctagattgga ttttatatat aacgataaac      1200
     gaccaataca tatcctagag tcagaattaa gtattctcag gcagggacga atgacagtta      1260
     ccgaatacta taacgaagtt aataaaaaaa tgactttact aataaacaaa accataatga      1320
     ctcacggaaa ggacagtgta ataaccaaag aaacaaacaa aacaataagg ggcaacgctc      1380
     tacgaatatt tatatccgga ttaaatggat ctatttcaga aactctattc tcattaaatc      1440
     caccagattt acccaatgct ttggcaaagg tccaggaatt agaatcaaac aatttccgtg      1500
     ctcaatttgc gaacaggttt aatgggttta aaaatgaaaa taaatatcag ggaaacaact      1560
     tacgatttga tcaagtacga ccaaataata ctaaaacggg caatcattgg ggtaataacc      1620
     aaaattataa ttggccacaa aagggatatt tttggcaaaa caataaccaa aaaacactca      1680
     aaagcaacaa gctgtcgagc caatggatgt tgatccatcg attcaactcc aaaataaacc      1740
     caataacaat cggcagccga ataatagttg gcaggcaaat aataatcgag gaagatataa      1800
     taacaattat tatcaaaata attatcgttc aaattactat cgcccaaatc aaaataaaga      1860
     gcaaactcaa gctcaaaaaa gggaactcga gggaactgta aatcagccag caaataaagt      1920
     aattagaata aataatatta atgaagatca ttttttagac gagaccccta caggggaatg      1980
     ccttatttaa ataggacaga cagaaaaagc aagaagcagt taaaaatttt aatagataca      2040
     ggagccactg cttgttacat aaaaaaggga atttttgaaa ataaaaatga gttatcaaca      2100
     tataaaaagg taactacagt tcatgggtat tcaattatta agtattacca tatgataact      2160
     atatttgaaa cacgacattt attttatgaa atagaaggat tagaatctga tcttctaatt      2220
     gggttcaatt tactaagaaa aattggagct ataataaata tagcaaaggg agtactggaa      2280
     tataaaggga aaactgaaaa gttaaaatat tacgataatg aggaaaaaaa taaaacaagt      2340
     ttaattgaag aaaaaataat attcttccgt taaaagaatt tattatacaa aaatattttg      2400
     atgaaaaaag tagcgaagac acagattcat tatttgtgga aaatagtgag aaaagcttgg      2460
     gattcgaaaa tcctgagaac gccgacgtag aaatatccgt caacaaaaat accaatatct      2520
     tgggattaaa aaatcctgag aacgccgacg tagaaatatc cgtcaatcaa aataccaata      2580
     tcttgggatt aaaaaatcct gagaacgccg acgtagaaat atccgtcaac aaaaataaaa      2640
     aaatcttggg aatcaaaaat cctgagagtg ccgacgaaga aaattccgtc aaaaatcgaa      2700
     taaataaaaa tcgtttgaaa tgtaaaaatt tcaagcccgc cgtcgttgag gtatccgaca      2760
     aacaacagat aaataatata ggtacagatc aattagaaga actaaaagaa aaattagttc      2820
     actatattga aaaagagcat tcaaagataa atatgcaaat tccttttaga acagacataa      2880
     agggggaaat aaatcttatt cacgaaaggc caatatacgg gaaacaatat ccgtatgctt      2940
     tatctgtcac cgactttgtg aatagcgaaa tcagtagaat gttatcagaa gaaattataa      3000
     ggcctagccg aagcccttac aattcaccag ttctggtagt cccaaagaaa ggagagaatc      3060
     aagacggaag ccgtaagtta agactcgtta ttgattataa aaaattaaat gaaagtacca      3120
     tacctgacag gtaccctatg caagacccat cagtaattct atctaatttg gggaaagcaa      3180
     gatatttttc aacaatagat ttagaatcag gttttcatca gatattaatg aaagaatctg      3240
     atgtcgaaaa aacatctttt tcaataaata atggaaaata cgaattttta agaatgccat      3300
     tcggattaac aaatgcacca agaatttttc agagagcaat ggatgacatc ctaagagaac      3360
     aaatagggaa aacatgccat gtctacatgg acgacattat aatattctca aattctattg      3420
     aacaacatta taaagaccta aacaaaatta taaatatatt attaaatgca aacatgaaaa      3480
     tctctttaga aaaatcaaag ttttttaaac gcgaaaccag ttttctagga tacatcgtat      3540
     cttataacgt cattaagaca gacccagaaa aaattgacac catttctaaa tatccgcttc      3600
     caaaaaatat tcgggaacta agaagtttcc taggccttac gggctattat agaaaatttg      3660
     ttttaaacta cgcctttata gccaaacctc taacaaaata ccttggcggt cataatggca      3720
     aaatttcaaa aagaatgtca acaaaaatgt taattcagct ggacgacgca gctattaaag      3780
     cttttaacga gctgaaagaa aatctcattg cgcaagtaga attagttcaa ccagactata      3840
     ataaaaaatt taccctgacc accgacgctt cggacgtcgc aattggtgca gttttatctc      3900
     aagaaggtaa accgattact tttatttcaa aaaccttatc caaaacagaa caagtttatg      3960
     caactaataa gaaagaactt ttagctatag tatgggctct taaaaatcta agaaattact      4020
     tatacggagt gattggaatt gaaattcaga ccgatcatca accattatct ttcgcaatct      4080
     ctgataaaaa tcctaatata gaaatgaaac gctggtattc cttcatagaa agtttcactc      4140
     caaaagtcat ttataaacca ggtacaacta atgtagttgc agacgcttta tcaaggattc      4200
     agattaacaa cttaactgaa agtaacgaat cggtctcaga tcaaaacact cagcattcag      4260
     cagagagtag ctttgagaat gttatacaag aaacccgaaa acccttaaac cagtttaagc      4320
     aacaattgct aatagcaacg gggaggtata cagtacatga gtcgattaat atatttgaaa      4380
     ataccagaca tatagtagaa ttcgacattc ccgaaaattt gatttcaatc ttaagagaat      4440
     acattcctcc taatataaca gtaggtattc attgtacttt agaggacttt tacagaattc      4500
     aaaaaccact taaagaaaat tttatgaata aatttttgta tacaagaata tttgtccaag      4560
     atgtggaaaa ttctgaagac agagcactta taatcgaaga aacacattgt cgagcgcaca      4620
     ggggacttga cgaaaattat aaacaaatca atagattgta ttattggcca aacttactca      4680
     caaaattaaa agaatatata aaaaattgta aaatttgcaa tgaaaacaaa tataacaggc      4740
     atccaattaa aattccaatt ggagaagccc caatcccaag taaagaagga gaaaatttac      4800
     acattgacat atattacgcg caaagtctca ctttcataac ttgtattgat gcttattcaa      4860
     aatttctagt agtaaaagaa atccaaaata aattaaatat cgaaaacaaa ataatggaat      4920
     tacttcaaca atttccacaa gccaaagtaa taatgacaga taatgaacca agctttacct      4980
     cggcccaatt taaatctttt gcacaaaggt gcggtttaac tttacattac gcagacccga      5040
     ggcacagtac ctcaaacgga caagttgaaa gggcacattc tacattaaca gaattagctc      5100
     gatgcattaa agaagaattt aatttaactg actattccga aatagtaatt agagcagctc      5160
     aagaatataa tcagagcatt cattcatcaa cgaaccaaaa accatttgac gtactataca      5220
     ataaaataga gcacgaaaat attcctcaaa ttttaaaaaa tacacaagag aaaatgttag      5280
     aaacacataa tgataacaga aaagaaaaac aatatcatgt aggacaggta gtttatgaaa      5340
     agaaacacgg ggaaagaaat aaacttaaaa ctagatataa aaaacaagta gttaaggaaa      5400
     atttacctaa caaaataata atcaacagta gaaatagaat tattcacaag gataatataa      5460
     aattctaaat atttatatat tacctatttt tttacctttt ccagaaaatg ttttatcagg      5520
     tgctcatact acaccttatt ttatttacaa aatcagaaat aattgactat acaagtcacg      5580
     agtatctttt attcaaggac aataaagacg tattgacgta tgattcatac gcagatttat      5640
     ttcacgtaac taacttaagt ttttataaag aaataataaa attggaatca gataatataa      5700
     aaagggatac taataaaaga tcacaatggg aaattaaata tgacttagaa gtaatcgaat      5760
     taattttatc acaattaatt tcaaccagat caaaaagggg tataaatgag ttaggcacta      5820
     tgtggaaatg gttagctgga accccggatc atgatgattt tattaaagta cagaataaaa      5880
     tcaatgaatt aattgaaaat aataataagc aatctattat caattccaaa ttgttcaaag      5940
     aaatagaatc tctttctgat gattttaaaa atgtttttat tgatcaagat ttaccattgc      6000
     gaaaacatcg cttacgatta ttaacatttg atttgcaaaa tttaattgac acaatcacac      6060
     ttgcaaaaat tgacgttttt aataccaaaa ttttaaacaa tgatgatatc atggaaatat      6120
     taaaacacga acaaaaacca gtaattatcg ctgacttaat ggacatctct gtttttaaaa      6180
     tcgcacttca taaagaactt ttaataattt atataaaata cccaataata aaaaacagat      6240
     gcgaaatata tcacaccaga gcgatttctc aaatcgatgg gaaactagta ttaagcaatc      6300
     aagtcgcaaa atgcgataat attttttatg aaatgtctaa ctttaagaac gaacttttta      6360
     ataattattg cactttaatt aaggaaaaaa cttgttttac ccgattatta aatggtgaga      6420
     aatcaacttg taagaaaata agagaaaaaa ataaaaaaat agacatcatt caagatggtg      6480
     ccattcttat aaatggtaac aatattgtta acaactccca tttaaacggg tcatatttaa      6540
     taacatttaa tggtacaacc aaaattaata atatctcata taccaatttg gaaaacaaaa      6600
     ttcttgacta cataactacg aaccacttca aaaattatga aatatccgat tacattttat      6660
     caaataactc ggaactctct ttagataata taaatatctt aaatcctttc attaaaatta      6720
     ataatactaa aatatcactt acctttatat tattaatttt aatcattata tatttaatat      6780
     ttttacttgt tataaaatac aaaaatgcta tattatttgt aaccaaaaaa caacggccag      6840
     aaccagaaaa atctattaac caagaaaatt ttctaacaga attaagagat caattaaatg      6900
     aatttcatat tgaatcggga cgatccattt tagaaggggg ag                         6942
//
ID   Gypsy-70_DEl-LTR repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   23-JUN-2021 (Rel. 26.12, Created)
DT   23-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-70_DEl-I;
KW   Gypsy-70_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-511
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7063-7063 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 511 BP; 176 A; 86 C; 80 G; 169 T; 0 other;
     agttatccaa cccgtgaaac caggccactt atggctttta taaacaataa tttcaatctc        60
     tgcatttgcc tttgtctttg cctttgactt agaggtccga tcttggttcc acagctaagt       120
     taaacaaatc aaaattaaag taaacatcag cttccgttcg aagctcaatc aattacgcct       180
     tttgcgtttc aagtgtccga caaattgcat cggccagcat aattgaattt cacaataaga       240
     tgcgacagtt tcatcttaag cttttaatct aaacataaat taaagttcaa aagttcttaa       300
     agaaaagctc ctggccgagg ttcgttggat ttgatttggg attggaaaag tcagtcctat       360
     tttgatcgag accgcgatcg gttaagaaat attagaaagt aacaaaactg tattgtgttt       420
     aataattata tcaataaagg tttaacatca taaaatattt gaaaataaaa attatatttt       480
     tttcttaaaa atttccggaa gaaaattaat t                                      511
//
ID   Gypsy-70_LMi-I repbase;    DNA;    INV; 3189 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-70_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3189
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (05-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(495..1328,1310..1468,1431..1733)
FT                 /product="Gypsy-70_LMi-I_1p"
FT                 /translation="PNCSKNLQNNKTRTLTILKNSKDXAELKTELKADIIQ
FT                 LTTDFTKQINNLSASFNAQKTEVHNTLVDMKSHITEQDKKFDTFQIMLQQY
FT                 TDKCQENYDNLKEELISVKQTFISENDLPDMIDKVVSTKFSAHKQNLLDEI
FT                 VEVVTIKHQELATVPQELSDRLLSVDSNLTNCQERLQTLEEKSNTDLSEIK
FT                 ERIIATENQLESLKKVHYEGSDKYSMDGDNLCEHKLETLINKKVREHCPNN
FT                 INVLDNNINTQHLIQPANPNNIRSTSPVNSEKDSHKVKRFSQGINLSTQLP
FT                 KFKQLPKFIMECWSKYVSCTLYIKTLGHEQFVHETTDACGMNSLFMKQLTL
FT                 VRCPSLCVAFFDXFFWRHMSNTIPILSFHFFDYFFYFLRTASYNSETRRPG
FT                 LFAVSICMAQLTRRINHPFCSCFVEVTWLINDFLLPSK"
XX
SQ   Sequence 3189 BP; 1018 A; 616 C; 588 G; 964 T; 3 other;
     agtggcgacc ctataaccag gataacctgc ctacaagaag atcccactaa ttacataatt        60
     gccaatacta tcaagaaatt atattttata tggactttgc catagtctat ataataactt       120
     gtggcaagta cacaatatct tcaagaagac aaagaagaat aatttgtgcg catctagcac       180
     aacaagaaca gaagatttgg tgagcagctg acgaggccgg ccacaccaca cctacaacgt       240
     ccggtacaac tctactcagc ttcacctccg gtctccaggg cagcggcaca cggcttcttt       300
     tatgttactg agagcagtac cagccgtgtc tccatggtga gagtgccttt tcctttcttc       360
     attttaatgt tcagtgatac agtgttagtg ctgtgtgtag tgtgattatt ccaacctatc       420
     gtatgcccat cacacgacaa caatttgcac agaacaaaat ggaggaagaa agaatcctac       480
     tttacaaact ataaccaaat tgttccaaga atttacagaa caacaaaaca agaactttaa       540
     caattttaaa aaacagtaag gatttwgcag aacttaaaac tgagcttaaa gcagacatta       600
     tacaacttac aactgatttc actaaacaga taaataatct ttcagcttca tttaatgcac       660
     aaaaaactga agtgcataat actttagtag atatgaaaag tcacattaca gaacaggaca       720
     aaaaattcga cacatttcag attatgttgc aacaatatac tgataaatgt caagaaaact       780
     atgacaattt aaaagaggaa ttaatatctg tgaaacaaac tttcatatcc gaaaacgatt       840
     taccagatat gattgataaa gttgtctcaa ctaaattttc cgcacataaa caaaatctat       900
     tagatgaaat tgtcgaagta gtcactatta aacaccaaga acttgctaca gttccacaag       960
     agttatctga taggctactt tcagtagata gcaacttaac taactgtcaa gagaggttgc      1020
     aaactctcga agagaaatct aacactgacc tttcagaaat taaggagagg attatagcca      1080
     cagaaaacca attagaatct ttaaaaaagg tacattatga aggtagtgac aagtattcta      1140
     tggatgggga taatttgtgt gaacataaat tagaaacttt aataaataaa aaggtcagag      1200
     aacattgtcc caataatatt aacgttttgg acaacaatat taacacccag cacctcatac      1260
     agcctgcaaa tcccaacaat attagatcta catcaccagt taattctgaa aaagattctc      1320
     acaaggtata aacctgtcaa cacaattgcc aaaatttaaa caactaccga agttcattat      1380
     ggaatgttgg tccaagtatg tcagttgcac actatacatt aaaaccttag ggcatgaaca      1440
     gtttgttcat gaaacaactg acgcttgtta ggtgcccgag tctgtgtgtt gctttcttcg      1500
     acwatttttt ctggcgacac atgtctaata ctattcctat cctttcattt cacttcttcg      1560
     actatttttt ttattttttg aggacagcat catataactc agagacgcgg cggcccggat      1620
     tattcgctgt gagtatttgt atggcccagt tgacaaggag gatcaatcac ccattctgta      1680
     gttgttttgt cgaggtaact tggttaatta atgacttttt attaccttca aagtagagat      1740
     gaccagagag taaataggta ctgttcatag tgtccatagt accacatgat ttatcgatgt      1800
     tagtatgtaa gtttttttta ttttttcctt tcgggggatc ttgaaagcgg cctttcacgt      1860
     ccgcgcgggc cgcccggccg gccccggggg ccccgggggg cggggaggta tgggtttcct      1920
     gtcttttggg ctatcttctg tctttcttcg gctccaactc ccagatcttt cttttccttt      1980
     tcttactact cttttataga gcaccagcct ttcagtcccc tttccatatt tcaatagttt      2040
     ctattgctga aacccttctt attttccgtg tcagaatttt attttatttt gtctgactac      2100
     aaccccagtt gattactcct gagggtattg cctgaggtct agttcacgca cacacacaca      2160
     cacacacaca cacacacaca cacacactgg gggtttaagc taagtttcta ttcttttgtt      2220
     gttaagttgt atttacattg ttagttttaa gtctaggttt aagttgaatc gtcagcacac      2280
     gagtcaagtc tgacaagtgg acttcaggtt tttttattct ctttcctcgt acactccttt      2340
     aaggtggggg aaaggaggaa attagtaaga tttgtgacga ttaggagtgc acgatagtgt      2400
     gaaacagagt aggtatacat gtattgtccc aagatggtgt gcaataacaa gaaatcccag      2460
     attaagctag aggtatgtga atagaaccaa ataaagggtt aaaagggaga acattaaata      2520
     atatttgttc tcagaagaca atcgaaggga tggagaaagt gttgggagtg gcagacccgt      2580
     aaaatgaggc tgttagctcc tgttaggtgc ccataatgag gacctaacat atttatattg      2640
     gtgtgcggtt cgacagatag cgactgacac ctagaagtaa cttaagcata aagcttggta      2700
     cttcaaawtc tttttttgtc ttttctatgt ctgatgagta acatataagt agaaatgccc      2760
     cttactccct aaattgcggt tcacacaagt tatgctagtc tgaggatact tgtactacaa      2820
     tactgctcat attccacaac aggtgaaaaa aaagaatatc ggcacaaata tttaaatagg      2880
     aatctattga agttagacat tctctcctta atttaagaga ataacccccc cccccaggag      2940
     agttaaaaga gattaagttt gtttatattc tttcaaacaa aagatggata atgaaagttt      3000
     gcctattgcc aatttaaatt gtcatagttc gcctaaactg tccactgtca gatgttttgt      3060
     gaaatgtatt catgggtact tacctcacga ttatctgtcc atagccacat cttaattaat      3120
     ctgactggct taatttaact gttatgccta aaatttttga tggttatctc aaggctgagg      3180
     gagggagta                                                              3189
//
ID   Gypsy-70_LMi-LTR repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-70_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-662
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (05-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 662 BP; 211 A; 103 C; 132 G; 216 T; 0 other;
     tgtagtggta caagccactt cccccacttc tccaatacct tgagataccc aaatagttat        60
     caatttattt tagtgaattg attaggcatg ataggaacag cagctgccgc cagaatctgt       120
     ttgtttcaga ttctggaggt ggtggcagca gcaagtggcc tcagatatta tgtctgccca       180
     gttaaagata tatattgaag ttccttggag aaagtgtgtg cttagacggt tgctaagaag       240
     aaaaagttgt tgattttgat ttgtattctg tgtctgacgt ctgtcaagat atttgtgtca       300
     tattcctatg tactaattga tagaataact ccttgaatat aaataaatat ggagttaaat       360
     gtataaacga gtggtttatt ctacaaagta catagatgaa tgagaaatga caaattcatt       420
     tggtaattaa ttaatgacta aaagtactta gaggcacagc tattgctgga cctcattgtt       480
     tcaagacttt catattttga acatgaaagg aagttttaat agttgaattt cactcttcat       540
     aaagaagaac tgtcagcttg gaattcatta actggtgaat tactaagcat ctacaaaagt       600
     aactatcaca ctgcttatgt tgaaagtcat tcaactcagg gtcaggcagc cgtgatagtt       660
     ca                                                                      662
//
ID   Gypsy-71_AA-I repbase;    DNA;    INV; 4348 BP.
XX
AC   supercont1.332;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_AA_;
KW   Gypsy-71_AA-LTR; Gypsy-71_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4348
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.332; Positions  367997  372344.
XX
CC   Positions [1776-2144] - Reverse transcriptase
CC   Positions [3413-3724] - Integrase core
CC   'ATTCA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           231..3425
FT                 /product="Gypsy-71_AA-I_1p"
FT                 /translation="MAENQVAALPQLPAGPVLPAAQIPAGNMSVLGVRPPN
FT                 PLNVGSEHLAEEFRDFRQSWDIFVLAAEIETKPDQVKVALLKNFLGLDAVK
FT                 VLNTLLPEADQVTTAAILTALEGYCLPQTNETYERFVFNSSKQSDSEDINQ
FT                 FVSRLRKLADTCNFGNLKDSLIRDRIVIGIQSDEARKVLLKTRNLTLVDAI
FT                 DVCRSQKLVENRMAAICVKEEPLGAEANSEIIAKVRMESARSEKWSCKFCG
FT                 RKDHKLGDRDSCPANNAKCRICGKLNHFAKVCRSKRDEEQIERKVVYGKQK
FT                 RTAKVKTVEEQSDSSDESEYISTIETVNVVEKKIAVDVKFSYGKADPKAVQ
FT                 CQVDTGASCNVITRYQLEKLVGKAVKLEASVTKLKDFGGNMVPAIGLVVLR
FT                 HQSKDKRFKVAFQVVDLLPEVLQMPLLGLKTCKALGIVSIHDINTCERDAE
FT                 ESKCEKKEVKNKEVEEIVKRYANLFSGDGKLEGKVDIKMNDAMPKQQEPRR
FT                 VPVLLREKLECELNDLERRGIIAKVDQPTEWTSNIVVVVRKEKVRICLDPV
FT                 ELNQVIKRPRFQMTTLEEILPDLHNAKVFSTFDVRNGFWHVELNERSSMLT
FT                 AFWTPFGRYVWKRLPFGLSCSPEIFQQKLFQALQGLKGIEVLADDILCFGT
FT                 GENEQQAIENHNNNLVALLERCRQTGIKLNRTKMRLNQSEVQFFGHVLSKD
FT                 GLKPDPGKTTAISKMPQPSNAAELQRFLGLANYMSKFIPKLSEMSVDLREA
FT                 LAEDSWSWGKRRREAFEVLKNQIAQITSLKFFNPGIETTIQCDASSYALGA
FT                 VLMQTGQPILFASRMLTKTEQKYAQIEKETLAILFACKRFDQYIFGSRQVM
FT                 VETDHLPLLSIFKKPISSAPKRIQRMVLSLQRYNLQVNYVKGSKLILADTL
FT                 SRNVNVDQTPDAEEMDALWKAIEEVSTLEHIEIQDELLQHIKKETEQDEVC
FT                 AQLKDYIVNGWPKEKNTVLDCAKPYFPFHNELVMQDGVILRGERLLVPAKC
FT                 RMKALNLLHYSHQGEQATLRKARSVVYWPNMNDHIRNYVKKCEACNKFKSS
FT                 QASEPIAR"
XX
SQ   Sequence 4348 BP; 1316 A; 871 C; 1206 G; 955 T; 0 other;
     tggtgtcaga agtggttaat cttttttcgg tatttttgcg tggaaaagtc ggaatctaat        60
     cggaaaaagt ggttacccgg aagcggaatt cgcgacggaa tcggaagata tcggaaactc       120
     ggaggtgcgg cctctcgctg gttagaaagc actgggagaa gggatcggcg tcggcacgag       180
     gttttcggga agaagcgcag tggttcatgc attagtagtg gtgttgattg atggctgaaa       240
     atcaagtagc ggcactacca caactgccag caggacccgt cctaccagca gcacaaatac       300
     cagcaggaaa catgagtgta ttgggtgtgc gtccaccaaa tcccttgaat gtgggtagtg       360
     agcatttggc ggaagagttt cgtgattttc gacagtcgtg ggacattttt gtgctagctg       420
     cagaaatcga aacgaaacct gatcaagtga aagtggcttt gttgaaaaac tttttggggt       480
     tagatgcggt gaaggtgctt aacacattgc tacccgaggc ggaccaggtg acgacggcgg       540
     caatactcac ggcgctggaa ggttattgtt taccgcaaac aaatgaaaca tacgagcgat       600
     ttgttttcaa ttcgtcaaaa caaagtgaca gtgaagacat aaatcaattt gtgagcagat       660
     tgcgaaaatt agccgatacg tgcaattttg ggaacttgaa ggattcgttg atcagggatc       720
     ggattgtgat tggcattcaa tccgatgagg cgagaaaagt gctactgaaa acgcggaatc       780
     tgacattggt tgatgcgatt gatgtgtgtc gctcacaaaa gctggtggaa aaccgtatgg       840
     cggctatttg tgtgaaagag gaaccacttg gggctgaagc aaactccgaa atcattgcga       900
     aagtacgaat ggaaagtgcg cgtagtgaaa aatggtcttg caaattttgt ggacgaaaag       960
     accataagct gggtgatcgc gacagctgtc cggccaacaa tgcaaagtgt agaatctgcg      1020
     ggaagcttaa tcatttcgcg aaagtgtgcc gctccaagag ggatgaagaa cagattgagc      1080
     ggaaagtggt ctatgggaag caaaagcgta cggccaaagt gaagacagtc gaagaacaaa      1140
     gtgacagtag tgatgagtca gagtatattt ctacgattga gactgtgaat gttgttgaaa      1200
     agaagatcgc tgtcgatgtg aaattttcgt acggaaaagc cgatccgaag gcagtgcagt      1260
     gtcaagtgga tacaggtgcg tcctgtaacg taattactcg gtatcagcta gagaagctag      1320
     tgggtaaagc ggtaaagctc gaggccagtg ttaccaaact gaaggatttt gggggtaata      1380
     tggtaccagc gattggatta gttgtcctcc ggcaccagag caaagataag cggttcaaag      1440
     ttgcgtttca agtggtggat cttctaccgg aagtgctgca aatgccgctc ctaggcctca      1500
     aaacgtgcaa ggcactagga atagtgagca tacatgacat caatacgtgc gaacgcgatg      1560
     ctgaagaaag taagtgcgag aagaaagagg tgaagaataa ggaagtggaa gaaatcgtga      1620
     agagatatgc gaatttgttt agcggtgatg gaaagctgga aggaaaagtg gacataaaaa      1680
     tgaatgacgc tatgccgaaa caacaagaac caagaagagt gccagtgcta ttgagagaaa      1740
     aacttgagtg tgaactgaac gaccttgaaa gaagaggaat catagcaaaa gtggaccaac      1800
     ctaccgaatg gacgagtaac attgtggttg tggtgagaaa agagaaagtg agaatttgcc      1860
     ttgatcctgt ggaactcaat caagtgatca aacgtcccag atttcaaatg acgacgttgg      1920
     aagaaatttt gccagattta cacaatgcga aggttttctc tacgttcgac gtgcgcaacg      1980
     gtttctggca tgtcgagctg aatgagagga gcagcatgct gacggcgttt tggacaccgt      2040
     ttggccgata tgtctggaag cggctgccct tcggactatc gtgctcgcca gaaatcttcc      2100
     aacagaagct gttccaagcg ctgcaaggac taaaaggaat cgaagtactt gcggatgaca      2160
     tactgtgttt cggtacagga gagaacgagc aacaggcgat agagaaccac aacaacaatc      2220
     tggttgctct attggaacgc tgcagacaga ccggaatcaa gctgaatcgg acgaagatga      2280
     ggttgaacca atccgaagtt cagtttttcg gacatgtgct ctcgaaggat ggtttgaaac      2340
     cagatccagg taagacaact gctattagta aaatgcccca gcctagcaat gcggcggaat      2400
     tgcaacgctt tcttggtctc gcgaactaca tgtccaaatt cattccgaag ctttcggaaa      2460
     tgagtgtgga tctccgggag gctctagcag aagattcgtg gtcttgggga aagcgtcgta      2520
     gggaagcatt tgaggttttg aaaaaccaga ttgcgcagat tacgtccctc aaatttttca      2580
     accctggtat cgagacgacg atccaatgtg atgcgagtag ctatgctcta ggagctgtcc      2640
     taatgcaaac cggtcagccg attttgttcg cttctcgtat gctgaccaaa accgaacaaa      2700
     aatatgccca gatagagaaa gaaactctgg caattttgtt cgcctgcaag aggttcgacc      2760
     agtatatttt tggaagccga caagtgatgg tagagacgga tcatctaccg ctgctctcta      2820
     tcttcaagaa gccgatatcg tcagcaccaa aacgtatcca gaggatggtc ctaagtctcc      2880
     aacggtataa tctgcaggta aattacgtga aagggagcaa gctgatactg gctgacactc      2940
     tctctcggaa cgtgaacgtt gatcagacac cggatgcaga ggaaatggac gcgttgtgga      3000
     aggcgattga ggaggtcagc actctggagc acatcgagat acaggacgaa ctgttgcagc      3060
     atatcaagaa ggaaacggag caggacgagg tttgtgcaca gttgaaggac tacatagtaa      3120
     atggatggcc gaaagagaaa aatacggtgc tggattgtgc gaagccttac ttcccgttcc      3180
     ataacgaact agtgatgcag gatggtgtga ttttgcgagg tgaaaggttg ctggttccgg      3240
     ccaaatgtcg aatgaaagcg ttaaatctac tgcactacag tcaccaaggt gagcaagcta      3300
     cactacggaa agcgcgttcg gtggtgtact ggccgaacat gaatgatcac atccgcaact      3360
     acgtcaagaa gtgcgaggcg tgcaacaagt tcaaatcgag tcaagccagt gaaccaatcg      3420
     ccaggtgatc acagattctg cgaaacagtt cacaagcgaa gaatggaaga cactgatggc      3480
     ggagtacggc attcaacatt cgactagtgc tccgtaccac catgaagcaa acggcaaggc      3540
     agaatccgcg gtcaaaatcg gtaaaaatct catcaagaag gcgttagagg aaggaaagga      3600
     tgtatggcta gctctactgg aatggcgcaa cacaccgcag tccgatggtt acactccaac      3660
     gcagaagctg atgggcagga aaactcgagg aatatttcca gttccgcaac accagctaca      3720
     agtgaaccct gttgatgctg atcggatcag agacaacata gaagcaagga aggtgaagtc      3780
     caaattctac catgatcgtg cagcacagga gttgccaaaa ctacagcgtg gacaggaagt      3840
     gtatgtacag ttaaagccgg aaactactac gcaatggact cgtggaagag tagcggaggt      3900
     tctgaacgat cgagattatc aaatacaagt aggagaggca gtctatcgtc gaaataggaa      3960
     gtatgtgcgg gatgcaaata cgtcggcatt ctgtggctac caggattctc cagagttaag      4020
     cagcaacaac gaccgtcagg atgaatcaac tgctgacagc ttcctcagtg cggccagtcg      4080
     acgagatcaa caggtttcaa gcacaccaaa cgccaatagg ttgccttcga tcaagtttga      4140
     gcctgctgaa gggtgtcaaa gcactccgac agtccacctc agcccctctc caagccagtc      4200
     atcgtatgct gagcaacatc ctccatcaac agtgcgtgca gagccaacca accggccgaa      4260
     gcggatggtc agacgaccat tgcggctgga tgactaccag ttggacgatt gagttatgtg      4320
     gtgagagcca tcttaaagca gaggaagg                                         4348
//
ID   Gypsy-71_AA-LTR repbase;    DNA;    INV; 122 BP.
XX
AC   supercont1.332;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_AA_;
KW   Gypsy-71_AA-I; Gypsy-71_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-122
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.332; Positions  367875  367996.
XX
SQ   Sequence 122 BP; 41 A; 19 C; 20 G; 42 T; 0 other;
     tgttatgata ctgaatttta cccaaatatt attactttga atttgtattg tatgactgat        60
     taaaaaatga ataaagctgg cagcattgcc attcgttcgc ggttcaccga caattgaaaa       120
     ca                                                                      122
//
ID   Gypsy-71_CQ-I repbase;    DNA;    INV; 8027 BP.
XX
AC   AAWU01040029;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_CQ_;
KW   Gypsy-71_CQ-LTR; Gypsy-71_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8027
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 521-521 (2011).
XX
DR   Genome; AAWU01040029; Positions   10963    2937.
XX
CC   Positions [4176-4679] - Reverse transcriptase
CC   Positions [5739-6218] - Integrase core
CC   'AACT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..3348
FT                 /product="Gypsy-71_CQ-I_1p"
FT                 /translation="MYDYHADDLVEEEIRYELDLREVRVEQGATIDSMKRS
FT                 LRKWLKHDKENKYEYIARLTFDQEYDVIKHDLAQISTLITLRPEQKIRSRL
FT                 VHLYYRILRSTAYQRINERQSFLDEINGLLRIYFSKQKPNSQVQTLGQVVQ
FT                 TNPVPNPSSCQQQIIPQNVNQLSNQAVNHTTNSNSGQVSNQASNVNTNQNV
FT                 EENLSHIWDQQIEQAVNQMMNPNPSTNPSTNTSTNMIRNEVNVSSSSSFAN
FT                 MPASQFWTQIADQTESNHVQNVSNNTLDNRAAQSECQVIRRVKLRLGGYQV
FT                 QFGPPQPINQNQNFSQNSMNRTSSPINLNPQVPNFNFPPPTIPSNTERNQS
FT                 QYQVPCNPNFEFPPQSDFLRNHAQNQDQRNAHYQMPRNPNFEFPPQSNFFR
FT                 NQAQNQDQRNTPFSGAQTNRNQNPQLGQNLTNKSFSQTNLNSETNLPFAKQ
FT                 KAPTQHNYRTAVNTTSHLDPPNFSISSQQSNSTAINMHDLSRALNEIQFSQ
FT                 NTTQNHSEQDQSQNQNTSQNSANANQNQPSNSQANDLVNDDFRSEMQSLIR
FT                 NLVRDSIVDYFGDLEQARTPTMTPRSTFFQDRVEQRRNEILTSNPGNDTQN
FT                 VNNSRSSFPFSSNNIPNNPNIPNAQNAPTSVNNPQSNFPFLSNNIPNNPNI
FT                 PNAQNAPNSVNNPQSSFPLLSNNIPNNVNIPNNPNFPNTQNVPNNPRFNDQ
FT                 NYNNPLKTKLERWQIHYSGEPGPRSLSVGDFVRQVSILAYSNQVSNEQLLQ
FT                 QSHVFFTGEARRWYFTYWEKFSTWDHLIYYLKLDFEHPNKDEAVEDAIKSR
FT                 KHRGNERFKTYLQDMERLFQELSYKIDERQKLKLIYQNTKISYKRRLLLIP
FT                 IYTLEQLTDCCHSFDCLEPNLHPAINQSTIHNSHPINQISCSELDDEENEF
FT                 EDDEQVNALFRDKRFKNKKFIRRENSNNSPEDNQDGIKRSTCWNCRKTGHW
FT                 YTDCPEPRTTFCYVCGEPDCTLKTCPNKHTWRPSSPKN"
FT   CDS           4323..6593
FT                 /product="Gypsy-71_CQ-I_2p"
FT                 /translation="MSQILHRIEKSKYFTTIDLKDAYHQVLLHPDSRNLTA
FT                 FRTSKALYRYKTMPFGLLNSGATLTRLMTRVIGYDLSPKVWVYLDDIIITS
FT                 DSLNEHFDLLQKVALRLHKANLTISVEKSKFCQKSVKYLGFVLSETGISVD
FT                 AAKIQPILDYPTPRNVKDIRRLLGIAGFYQRFIENYSAIVTPISDLLKKSK
FT                 AKFQWTEIAEEALLALKSALTSPPILANPNFSEPFVIETDSSDIAVGAVLT
FT                 QVLEGKRRCIAYFSKKLSSTQRKYGATERECLGVLMAIDHFRPFIEGTHFT
FT                 IMTDAMSLTFLKTMSINSRSPRLARWAMKIQDLDVDFVYKKGKDNITADAL
FT                 SRSLNQIKAQVSDAQYEHLRDSIERFPEKYNDFKVIDRKIYKFVTNAGRPD
FT                 DPTFRWKYVPTALEKPSIVSDTHNQAHLGFEKTLSTIQQKYFWPRMSADVL
FT                 RFCKNCMTCKRSKVDNINPNPPCGKEKIFHRPWEMISIDFIGPYSRSKSGN
FT                 AYALVVTDYFSKFTLIQVMRQATTAAVIKFLENNVFLLFGVPNVLISDNGP
FT                 QFISRAFKQFLEKYNVNHWNLAVYRPNPNPTERVNRVIVSAIRSSLENKTQ
FT                 KDWDQGIQFIASAICNTVHDSTGYTPYFVNFGRNIISSGKEYEHLTDTDQN
FT                 ITQDPSKISNDMKNLYEAVRINLARAYKRYAGNYNLRSTRNIKFEPGEIVL
FT                 KKNFYQSDKSANFNAKLAPKYSEAKVKRQTGTNTYELWDTNMHKRLGVFHS
FT                 SVLKKI"
XX
SQ   Sequence 8027 BP; 2686 A; 1707 C; 1383 G; 2251 T; 0 other;
     ttttggcgcc caactaccgg atttagtatt gattttggtt tattcattta cttttcctat        60
     tactgcgttg tgataatttg cagtttactc agtttattat tataattttc tcttattaga       120
     gagtttgaaa attcaatttt tattatcatt tactgaaaat tatactttat ttcagttatt       180
     tttttttttt cattattttt aagcccaact gaatttcaat tttccccacc tttcctttaa       240
     acctatcttt tcaaatcttt tttttttctc atttgctcat ttcaattttt tgaaccccgt       300
     attattatat tgtttatatt gtttaattgg atttccaaat caaagtttaa cgttaaataa       360
     ctgtacaaaa tgtacgacta tcatgcagat gacttggtcg aagaagagat caggtatgaa       420
     ttagaccttc gggaagtccg ggttgaacaa ggcgctacca ttgatagtat gaaacggtct       480
     ttgcgcaagt ggttgaaaca cgacaaagag aacaaatatg aatacatcgc gagactaaca       540
     tttgaccagg agtacgatgt gatcaaacat gacctagcac aaatcagtac acttatcacg       600
     ttgcgtccag aacagaaaat ccgatctagg ttagttcacc tttactatcg tattttacgc       660
     tcgaccgctt accagcgcat taatgaaaga cagtctttcc ttgatgagat taacggactt       720
     ttgcgaatct atttcagtaa acaaaaaccc aactctcagg ttcaaacctt aggacaagta       780
     gttcagacta acccagttcc aaatcctagt tcttgccaac aacaaattat tcctcaaaac       840
     gtaaatcaac tatcaaacca ggcagtaaat cacactacaa attcaaattc aggacaagtt       900
     tcaaatcaag cgtcgaatgt taatacgaac cagaatgtag aagaaaactt aagccatatt       960
     tgggatcagc agattgaaca ggctgttaat cagatgatga atccaaatcc ctcaacaaat      1020
     ccctcaacga atacatcaac aaatatgatc agaaatgagg tgaatgttag tagttcaagc      1080
     agttttgcaa acatgccagc ttcacaattt tggacccaaa tcgccgacca aactgagtca      1140
     aatcatgttc agaacgtatc aaataatacc ttagataata gggcagctca gagcgaatgc      1200
     caggtgatca ggcgtgtaaa attgagatta ggtgggtacc aggttcaatt cggaccaccc      1260
     caacccatta atcaaaatca aaacttctca caaaattcta tgaacaggac atcttctccg      1320
     atcaacctca acccacaagt gccaaatttt aatttcccac ccccaacaat tccatcaaat      1380
     accgagcgca accaatcaca atatcaagtg ccgtgtaatc caaacttcga gtttccccca      1440
     caatcagatt tccttcgaaa tcatgctcaa aatcaggatc agagaaacgc acactatcaa      1500
     atgccgcgta atccaaactt cgagtttccc ccacaatcca atttttttcg gaatcaagct      1560
     caaaaccagg atcagagaaa tacaccattt agcggagccc aaaccaatag aaatcaaaat      1620
     cctcaactag gccaaaacct taccaacaaa tcgttttcac agaccaactt aaattcagaa      1680
     acaaatctac cctttgcaaa acagaaagca ccaacccaac acaactatag aacagcagtg      1740
     aacactactt ctcacctaga tcctcctaat ttttcaattt caagccaaca atcaaacagt      1800
     accgcaataa acatgcatga tttgagcaga gctctcaatg aaatacaatt ctcccagaac      1860
     acaacccaga atcattctga acaagatcaa tctcaaaacc aaaatacgtc ccaaaattct      1920
     gctaacgcta atcagaatca accctcgaac agtcaggcaa acgatttagt taacgatgat      1980
     tttcgttcag aaatgcaatc tctaattaga aacctggtca gggattcgat cgtagattat      2040
     ttcggtgact tagagcaagc gagaacccca acaatgacac caagatcaac ttttttccaa      2100
     gaccgtgtcg aacaaaggcg taatgaaatt cttacttcta atccaggaaa cgacactcaa      2160
     aatgttaata actctcggag tagttttcca ttctcgagta ataatatccc taacaacccg      2220
     aacatcccta acgcccagaa tgccccaacc agtgttaata acccacagag taattttcca      2280
     ttcttgagta ataatatccc taacaaccca aacatcccta acgcccagaa tgccccaaac      2340
     agtgtaaata accctcaaag tagttttccg ttattaagta ataacatccc aaacaacgtg      2400
     aacatcccta acaaccccaa tttcccaaac acccaaaatg tcccaaataa tcccagattc      2460
     aatgatcaaa actacaacaa cccgttgaaa acaaaactag aaaggtggca aatacattac      2520
     agtggtgaac caggaccaag atcgctatcg gttggagatt ttgtaagaca agtctcaata      2580
     ctggcatatt caaaccaagt ttctaacgaa caattgcttc aacagtctca tgtgtttttc      2640
     acaggggaag ccagacgttg gtatttcacg tactgggaaa aattttcaac ttgggatcac      2700
     cttatttact atttgaagtt ggactttgaa catcccaaca aggacgaggc ggtcgaagat      2760
     gccattaaga gtcgcaaaca tcgtggaaac gagcgattta agacatactt gcaagatatg      2820
     gaaaggttat tccaggagtt atcatacaaa atcgatgaaa ggcaaaaact taaattaatt      2880
     taccaaaata caaaaatctc atataaaaga cgcttattgt tgatcccaat ttacactttg      2940
     gaacaactaa ccgattgttg tcacagcttt gactgtttgg aaccaaatct tcaccctgcg      3000
     attaaccaat cgacgatcca caattctcat ccaataaatc agatcagctg ctctgaattg      3060
     gatgatgagg aaaatgaatt tgaagacgat gaacaagtga atgcactttt cagggataaa      3120
     agatttaaga acaagaaatt cataagaaga gagaattcga acaactcacc agaagataat      3180
     caggacggta tcaagcgtag cacgtgttgg aactgcagga agactggaca ctggtacacg      3240
     gattgtccag aaccacgtac gaccttctgt tacgtgtgcg gtgagccgga ttgtacgttg      3300
     aaaacttgtc cgaataagca tacgtggcgt ccaagtagtc caaaaaacta ggtggcggga      3360
     cggcccagga cgtactgccg tcgtcccaag ttgatttcaa ttatttcaat cgagttttcc      3420
     acgtcaatac gagcccttca cgatgtccgc acgcaaccgt tgaaatcctc aatgaaaggt      3480
     taacaggact tctcgattca ggagcgaata ttacggtgac taacgcagta gatcttctcg      3540
     agcgattaaa tctaaaaata gtccaaaatc agattcgtgt tcaagcagcc aatggagctc      3600
     agcttacctg tatcggtttc gcgtacattc ccttcacgtt caataataag acgaaagtca      3660
     ttccaaccgc gatcatcccg gaattgtcga aagacttgat cctcggaaca gatttttgga      3720
     aagcgttcga tatccacttg tcaatcggcg gtaaacctgt cccggaaggc agcgcgatcg      3780
     atttcgatgt taattccata tcgcacgtgg cagaatacga tcacgataac atctgtttca      3840
     gcttagaagt agacccgtca ttccgcggcc cagtagaatc ccctccggtc gacgaaagtt      3900
     tagatattcc ttcaatagaa atttccaatc acgatcttac ttcggttgat gagattaaaa      3960
     cagaacacgc gctgtccgaa cctgaaaaac tgaaattatt tgaaatattg aaagcttttc      4020
     cacgaactgt gaacggaaaa ataggacgaa cacaacttat tcaacataaa atcgtactaa      4080
     atcaaagtct gcacgaaatc aaacacaaaa aagttccgat ttatccaatt tcacccaaaa      4140
     ttgaaaaaga agtagacaag gaaattgaac gactcaagag tttagacctg attgaagaat      4200
     gtgaaagtga tttcattaac cctttgcttc ctgtgcggaa aggagaaaat aaatggcgtt      4260
     tgtgtcttga tgcgagacga ttaaattcat tgacaaaacg ggatgaatac ccattcccaa      4320
     atatgtcaca aattttacac cgaatcgaaa aatctaaata tttcacaaca attgatttaa      4380
     aagacgccta ccatcaggta ctcttacatc ccgattcacg taatctgacc gcttttcgca      4440
     cctcaaaagc gctttatcgg tacaaaacga tgccatttgg gttgttaaac agtggtgcaa      4500
     cattaacccg attaatgaca cgtgttatcg gttatgattt gagcccgaag gtgtgggtct      4560
     accttgacga catcattata acgtccgatt ctttgaatga acattttgac ttgcttcaaa      4620
     aagtcgcact tcgcctacac aaggccaatt tgacaatcag tgttgagaaa tccaaatttt      4680
     gccagaaatc agtaaaatat ttaggattcg tattgagcga aactggaatc tcagtagatg      4740
     cagcaaaaat tcaaccaatt cttgattatc ctaccccaag aaatgtcaaa gatattcgaa      4800
     gattgttagg catcgctgga ttttatcagc gtttcattga aaattacagc gcaatcgtga      4860
     ctccaatttc tgatctattg aagaaatcaa aagcaaaatt tcaatggaca gaaatagccg      4920
     aagaagcact tcttgcccta aaatccgcgt taacttcgcc cccaattttg gcaaacccaa      4980
     attttagtga acctttcgtg atagaaaccg acagttcaga tattgcagtc ggtgcagttt      5040
     tgactcaagt gttggaggga aaaagacgtt gtattgcata tttttctaaa aagttatctt      5100
     caacccaaag gaagtatgga gccactgagc gtgaatgcct tggtgttttg atggccattg      5160
     accatttccg gccattcatc gaagggactc atttcaccat tatgaccgac gcgatgagcc      5220
     ttactttttt gaaaacaatg tccattaata gccgttcacc tagactggcc cggtgggcga      5280
     tgaaaattca agatttagat gtcgattttg tttataaaaa gggaaaggac aacataacag      5340
     ctgacgcact ttcgcgctcg ctgaaccaaa tcaaagcaca ggtttcagat gcacaatacg      5400
     agcacctgcg ggattcaatt gaacgatttc ccgagaaata taacgatttt aaagttattg      5460
     ataggaaaat atataaattt gtcacaaacg caggaaggcc agacgatcct actttccgtt      5520
     ggaaatatgt cccaacagcg ctggaaaaac cttcaattgt cagtgacacc cacaaccaag      5580
     cgcatttggg ttttgagaaa actttaagta caattcaaca aaaatacttt tggcccagaa      5640
     tgagcgctga tgtgctccga ttttgtaaaa attgcatgac ttgtaaacga tcgaaagtgg      5700
     ataacatcaa ccctaatcca ccctgtggga aagagaaaat ttttcatcga ccttgggaga      5760
     tgatttcaat tgattttatt ggtccttatt ctcgttcaaa atcgggaaac gcctacgcac      5820
     ttgtagtaac ggattatttt tccaaattta ctttgattca agttatgcga caagcaacaa      5880
     cagcagctgt gataaaattt ctggaaaata atgttttttt actttttggc gtaccgaatg      5940
     tgttgatttc agacaacggt ccacaattta tttcacgagc ttttaaacaa tttcttgaaa      6000
     aatacaatgt taatcattgg aatttggcag tttacaggcc caatccaaac cctaccgaac      6060
     gagttaatcg agtgatagta tcagcaattc gtagttcgct agagaataaa acccaaaaag      6120
     attgggatca gggaattcaa ttcatagcat cagccatatg caacacagtt cacgactcaa      6180
     caggttacac accgtatttt gttaactttg gcagaaacat aattagctca ggaaaagaat      6240
     atgaacacct aacggacaca gaccagaaca taacacaaga tccatcaaaa attagcaacg      6300
     acatgaagaa cttgtacgaa gccgttcgca taaacttagc gcgagcatac aaacgttatg      6360
     ctggaaatta caaccttaga tcgacaagaa acataaaatt tgagcctgga gagatcgttc      6420
     tcaaaaagaa cttctaccag tcagacaaat ctgcaaactt taatgctaaa ttagcaccca      6480
     aatatagcga agcaaaagtg aaaagacaaa ctggaacgaa tacatatgaa ttgtgggaca      6540
     caaacatgca caaacgcctt ggagtctttc actcctcggt tctaaagaaa atataaatat      6600
     ataaatacag tctagacttt aggaccgaga cttcacactt accaactctt ttgttacatt      6660
     ttttccggct atgtcgatct cgccatcaga gtcgagccag tctcctcgat gtgctgagac      6720
     caacaataga taaatatata acacacacaa acacttagtg gatttttttc ctgtaatttt      6780
     aatatgtatg tcgtcgtgca ataattttct ctgttaagtt taccaataca ctattttgaa      6840
     ataatatttt cgaacaaaga tggccccaaa aacattattt catcttacaa ttttctatta      6900
     gattttcata actttgccac cacatttcaa tatttccacc agtagtagtc gcccatcaat      6960
     ataatcacca ccagaatttt cctttttcct acgatcatcc catttcccaa cccattatta      7020
     tctctctaaa actcagattt atcctcccac acattttttt tctcgagacg tgtgtttcct      7080
     ttagtcaccc ataacacact cacatgatca ccttagattg gcaacataat ttccgctaaa      7140
     atcagtattt tcatttaatt ttccccagac cgtcgcgtag aatttgattc gctgtaaagt      7200
     accgacgaag actgattttg tttttcaaga ttggcactac ttactatcca caatattaca      7260
     tacacaatag tacaaggcgt tggagcactg atagggattg catgcgtagt tgtattaact      7320
     attatcaggg aatacagaga tgagtgagat cgagtgcacg taggttcgcg tgatagtgtg      7380
     atagggacga atgcatcagt tgtgaccgcg gtttgatcga gagtagtcga gcgtgcgcga      7440
     gtttagtttt taagtgcgtt cttcgcgata attaatcgaa ttttttcgaa aagaaatttt      7500
     agtttaccgc atgatcgatc cagagtgacc atatatatat ggtaaatttg ttttaattag      7560
     aagccaaaaa ggccaaaaac cagagatttc tgggagtttt ttatgctaat tttaaggtgc      7620
     gaatgatttg catgtgcgac aggtgcaaaa ggcggtgcga tggtatgtgt aggcgctata      7680
     agttcccgtc gttctccaat gcgcaataga ccggatattc tatgcagcgc tttaacaagt      7740
     aagattaact tataaattta gttcaagccg atgaaaaaaa gatggccgtt atttgtattt      7800
     ctctgttgag caacccttct tcttctatct acttattatc ctcttattat tatacgtgct      7860
     ctcttttgtt atacttttta aaattgatct gaatcataaa atcaaacttt tatagatttg      7920
     taagtgtaaa taaaactaat tttaatacaa ttttacgtaa aaattgcctc agtgaaaatt      7980
     ccaatcacag tagcaattga aattttcttt tttttgttgg ggggtaa                    8027
//
ID   Gypsy-71_CQ-LTR repbase;    DNA;    INV; 2055 BP.
XX
AC   AAWU01040029;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_CQ_;
KW   Gypsy-71_CQ-I; Gypsy-71_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2055
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 522-522 (2011).
XX
DR   Genome; AAWU01040029; Positions    2936     882.
XX
SQ   Sequence 2055 BP; 490 A; 584 C; 526 G; 455 T; 0 other;
     tgtaaccata ttaagaacga tcatgggcga tcatcaattt cccctaaatg agcgagcgcc        60
     aactgagtga ggtggtgagg ttcggaacta aaaatttaaa aaaataggtc aactctacat       120
     ctcccgtaga cgatgatcgt gtgatatatt gacctggccg aaactctctc aattttccgc       180
     taagtgctta gcaaccaggg caccttgcga gtaggactcg gccttggcca atcagagccg       240
     gccacgagtg agccattttt cgcggtcaag gtctcgacct agtgtcgtca agggctctct       300
     gccatttgct ccgagatcgt gcgctagtga agatcaccag catttaggga agtgtagtag       360
     ttgcgaaaat taataagtct gccaattagc ccagccgttg aatttaagtc cgcgtgtgca       420
     aagcgaagtg tatttggacg tgagtttacc cccgagttat tgtagttcct ttaattaatt       480
     tagatcactt taccaatttt gtgaaattag gcccaagtca ctagactagc gtttttccgc       540
     ttcccccgcg ggcgtgttgt tacaaaccag aaccaaaggt aattaaatac attaaattag       600
     gccagtgatc taagttgccc cgtttcgccc gtagaacctt caggcgaagg ttcttttggt       660
     aggttctaca tcccaccagc acctgcgaac gtttcacaac gcggtgcagc actgtgaggt       720
     aagcaccacg ccaccgcgtg cttcacaccg gagcagccca agcaagcccg cacagcgaac       780
     gaaccgtgct atccgccagg gtccgccgag agtccgtagg aggccacacc atcccctccg       840
     agccacagga cgcgatcgtc gacgaggctc cagcatagct ggcccgctga gccgcccacg       900
     cggccacgtg gtgtcgtccg tagaggttgc cgccatcaac ctcgagccac tggaccacca       960
     tcgactttcg tccacatccg ttcgaaccgg cgattgaccc gcgacacgtg gccagcaact      1020
     ttagctcgac gcacgagtcc gtagcgtgcc tgccaacgca cgtgagtcat tggacccagc      1080
     cgttttccac ccagcctcgc ttgcgagtat tccgacaacg atcggcaggt gagttgtccg      1140
     taggagacgc gtcaaatctc tgagcgagtg gacctcaccg gcgcctggaa gtgccaagct      1200
     cgagtgccac gtgtcccagc gaagtcccac tagcgtggga gtcctgccca gtagcagcgt      1260
     tcgtaccagg cggcccgaga gcccgcccag acgtagcagt agcagatcag cacctgtgat      1320
     cgcgagaacc ggccggcagc gtagtcggca gcggcgttca tccgccgagc aacagtagtg      1380
     ataccgcgag tcagcagccg cagcagcaga gcaacgtgtc cgtagcgtgc ccgccaacgc      1440
     acgtgagcca gaggacccag tcgttcacgc cagcccagct ggccgacttc cgatcgagaa      1500
     tcggacaggc gtgcgagtcc gtaggggacg cgctaaatcc tcgagccagt ggaccgcgcc      1560
     ggcgactgag agtgcagcaa caaaaaaaaa aaacagcctt aggctgtagc aggtcagact      1620
     aggtttaaga gatctctccc cttacacgtg cacgtgcccc aaactgtaaa ccctgccccc      1680
     cctagagaat aaacaagtgg atgttaagtt taattctagg cttgattctt ttacgaaacg      1740
     cactttcgac agacttgtgg tttttgagtt ccttgttcga tatctatctt cgtttttttg      1800
     atgcgctttt aataagtggt tctcacttga cctgccctga gaagctaagc cgggttctcc      1860
     aagtaacacg ccctttcgca gtgtagcctt cagctacact ggcgcttaag cgagagggtt      1920
     tccaaaggga cggtctttcc gggtcttcgg ttggcggaaa cagttgtggt tgttgaccaa      1980
     aaaaaaacta agttttggtt ccgttccatc acctcactag tcgctaatcg catccccccc      2040
     aaaagaactg ttaca                                                       2055
//
ID   Gypsy-71_DEl-I repbase;    DNA;    INV; 6140 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_DEl-I;
KW   Gypsy-71_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6140
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7034-7034 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6140 BP; 2136 A; 1366 C; 1237 G; 1401 T; 0 other;
     ggcgcccaac ttaattaaga actcacgcac acatggaatg taacatgtaa gttctataaa        60
     aaaaacatca aatccaaaaa tttaaataaa aaattaaagt gtttgatttg acctataaaa       120
     actgtgccga aataatacaa acataatttg cataaccgat ttaaaaataa tcggaatacc       180
     aaacaaataa gtgagaaggt ttttaatgat tgattgatga gttggtcaaa ggactataga       240
     gaggttaaaa cagagtacga cagtgaagac agttggaatt ctaaccaagg ttttaatatt       300
     tccgaccacg acagtgatag ccaacagtgc cctttagaaa cagacatgga cgcacaacag       360
     gttcaagctt tagtaacagc tgccgttaac gcagcgttag cacgtcagga aataaatttt       420
     caagcgcgca ttcaagcggt cgagaatcag cttagcaatt tgcgtgtcga cacccctcag       480
     atcaacgtat atgaaaggat ttctgtaaac ccagaaatca gatgcgacgt tcccttggac       540
     attataaaat caataccaga ttttaatgga acccaagacg agtacgtggc atggcgacag       600
     tctgccaatg acgcatatga gcttttcagg ccgtataacg gcagcaattc acattatcaa       660
     gccgtcacta ttattagaaa caaactcaaa gggcccgcac gggcactgct agtctcacac       720
     aacacagtgc tgaatttcga tgcaattata gcaagactag attgcacata cgcagatcgc       780
     acatcattgc gcactctgcg gcaagcgctt gagatggtta ggcaaggcga ctcaagtcta       840
     atggactatt atgacgaagt cgaaaagaaa ttaacgctgg taactaataa aatcattatg       900
     tcacacgacc aagaaggcgc tgacctaatg aacaaagaaa tcagggcaga tgcgctgcac       960
     gcatttattt cgggcctaaa aaaatcatta aaggcaattg ttttcccagc tcagccaaaa      1020
     gacctgccgt ctgcgctagc cctagcgaaa gaggcagagt ctagcatcga aagaagcatg      1080
     ttctcgagtt cgtatgccaa ggctctagaa gagaaatccc atgcaatggg ggccatcagg      1140
     tcccgcggtc accccaaaca ggaaaaaaac aatagggacg accgtagctt cgacaaaaac      1200
     ccccatttta ccaagcggca aaataacaac acttattttg aacagagaaa aagagaccag      1260
     ggccaggctc ctgaaccaat ggagatagat tcgtcctcga gattcaggca gctcaccaat      1320
     tttgagagac agcaaacaaa caatggtcca ccagctagga agcggcaaaa ttcgtcagag      1380
     cgagttacag gtcagagacg gcagcgagtc aacaatgtag tccaaggtgc ccaggccgac      1440
     ctagatgagg actataaaga tgcagccgaa agcgcagtcg agaacataaa tgacgacagc      1500
     gactcaacat atgacaacga ttcattaaat tttttagtgg gaggtcccgg ctacccgtca      1560
     ttgaacggca gctggctggg agaaaattaa aaatcctaat agacactggg gcggcgaaga      1620
     attacgtaaa gcccgtaaag gagctaaaaa acgtaattcc agtcgacagg cctttcactg      1680
     tgagctcaat acacggctcc agtgaaatca aaaacaaatg tttaatgtca atttttcaaa      1740
     aaatttcacc atttttctta ctagacacgc ttagtacgtt tgatgccatc ataggcttcg      1800
     acctcttaac agaggcagga gtgacattga acttaaacaa tagcactcta gaataccaga      1860
     ataaatcgga aaagcttcag tactacaact gtgacagcgt gaacttcaca gatgtaaatg      1920
     acatagtggt gccaaattcc atcaaaaagg aatttaaaaa gatgatatta ggaaaactaa      1980
     aggtattttc gacctctaac gaggcactac cctttaacac ttctgtcgtc gccactattc      2040
     gtacggaaga caacgaaccg gtgtattcaa ggttgtaccc acaccctatg ggtgtggcag      2100
     attttgtaaa caacgaaata aaacagttgt taaaggatgg cataattaga ccatcaaggt      2160
     ccccatacaa cagcccaact tgggtagttg acaaaaaggg aaccgacgcc aacggcaaca      2220
     agaacaaacg tttggtaatc gattttagga aattgaacga aaaaactatt ccagatcgct      2280
     acccaatgcc ttgtattccc atgattctag cgaacctagg gaaggcaaaa tttttcacta      2340
     cccttgatct aaaatcaggg taccaccaga ttttcctagc ggaacaagac cgagagaaaa      2400
     cctcgttttc agtaaacggc gggaaatatg agttctgtcg cctacccttc ggccttaaaa      2460
     atgccggaag catttttcag agaaccatag atgacgttct tagagaacaa attgggaaaa      2520
     tttgttacgt ctatgttgat gacgtaataa ttttctctga gaacgaagct gaccatgttc      2580
     ggcacatcga gacagtacta aagtgcttaa gcgatgcgaa catgagggtg tcccaggaaa      2640
     aaaccaaatt ctttagggaa agcgtcgaat tcctaggttt tatagttacc aaaggtggag      2700
     caaaaactga ccccgagaag gtaaaaacca tacaggaata ccccgaaccg aaaaatttgt      2760
     acagtctcag atcatttcta gggttagcaa gctactacag aagattcgta aaggattttg      2820
     ccgcaatcgc taggcccttg acagacatcc tgaaagggga aaacggaacg gttagtaaac      2880
     acaggtcccg taaggtggca atcgaattta gcgattcaca acgcgatgca tttgaacgat      2940
     taaggaagat tttagcatca gaagatgtca tcctcatgta tcccgatttt aagcagccgt      3000
     tcgaccttac taccgatgcc tccgcaaatg gcataggagc tgttttgtcc caagggggtc      3060
     gacccattac aatgatctcg cgaactttaa aacagtgcga gttgaattac gccacaaacg      3120
     aacgtgagtt actggcaatt gtgtgggcac ttggcaagct acaaaacttc ttgtacggca      3180
     ccaaggagat aaaaatattt accgaccacc agcctttaac ctttgcggta tctgaaaaaa      3240
     atacaaacgc aaagattaaa agatggaagg cttacattga cgaacatgat gcaaaaatgt      3300
     tctataagcc aggtaaagaa aatttcgtgg ctgatgccct atcacgacaa aacgtaaacg      3360
     cattgcaaga tgagccccac tcagatgcag ccaccattca cagcgaaatt tccctgacct      3420
     acacaattga aacgacggac aaacctttaa attgtttcag gaaccaaata gtcctagaag      3480
     aagcacgttt cccattaaag cgcaacttta tacttttcgg cagcaaaact cgccacttaa      3540
     taaatttcac tgataaaagt aacctttttg agacgcttaa ggaggtaatt aacccaaatg      3600
     tcgtaaatgc aattcactgc gacttaccga cactggccag ttttcaacac aaagtcgtgt      3660
     taaatttccc cacagcaaaa ttttggcatt gtaagaattt agtagccgac atctctgaca      3720
     aaaacgaaca aagagagatt atcacagctg aacacaatcg tgcgcacaga gctgctcaag      3780
     aaaatactaa gcaagtcctt cgcgattact attttcccaa aatgaacaag ctagccaatg      3840
     aaatcgtcgc taattgcaag gtatgcatac aagcaaagta cgataggcac cccaaaaagc      3900
     aagaacttgg aataacacca attccatccc actccgggga aatgctccat atcgacgtat      3960
     ttaacacaga taaaaaacag tttctaactt gcatcgacaa gttctcaaaa ttcgccgtag      4020
     ttcagccaat aatatcccga acaatagtcg acgtaaaagc ccctatatta cagctgataa      4080
     acttattccc aaacattaga accatttatt gcgacaacga gccagctttc aagtctgaaa      4140
     caataacatc gcttctaaaa aacaactaca atatagatgt cgtaaatgca cccccactcc      4200
     acagcagttc aaatggtcaa gtggagcgtt ttcacagcac cttaaccgaa atcgcgagat      4260
     gtctgaaatt agacaaaaaa gccgacgaca caactgaatt aataatgagg gcaacggtgg      4320
     aatataatag aacactccac tcaatcaccg gtagaaaacc tatagaggtc ttacattcgg      4380
     aatctgacga tatcaggcga atcgttaaag aaaaaataac gaaagcccag gaagacaata      4440
     tcgaaagatg taatcctaac agacagaata gggtattcga ggtaggtgag aaaatataca      4500
     taaaaaacaa caaaaggctt ggaaacaagt tgtccccctt atgctcagaa gaaaagatac      4560
     aagcagacct aggaacgtct gttcttgtaa aggggcgggt ggtccataag gacaacattg      4620
     tcacgcacaa agattagatt agtaatagag taagttgcac aatatttttt ctcattttgt      4680
     tttccttgtc ttacaggatg attagcacaa tcctgctcat gataatatca gtgaacgctc      4740
     ggattaccga ttactcgcac tctaactaca ttcccataat agacggggac gcgttagtat      4800
     gggagcagag ggattactta aaacacacaa gcaacttgtc cgattttgta gcaattacag      4860
     agagcaccga aaaattgtcc gaacatttcc cacaatcaca tatgagaaag ctgttagagg      4920
     tcgatacaga ccacattaag agtcttctgt ccgttttaaa aatacaccat aggatagcta      4980
     gaagcctaga ttttctgggg acagctctca aagtgatcgc aggcacccct gacgcctcag      5040
     acctcgaacg aataaaagta acagaatccc aactagtcga ctcaaataac agacaaattc      5100
     taataaactc tgaaacccag aaacaaatta acaacctaac tgataccatc aatcaaatta      5160
     ttaaaagcaa acaacagaat ttagttgaca ctcctcactt atacgaggcc cttctggcca      5220
     gaaacagaat gctaataaca gaaattcaaa atttaatgtt aacagttact ttggccaaat      5280
     caaacatagt gaatccaact attttcgaca acaatgattt gaggtttttg gtagaacata      5340
     caatagacac accaatagtt agtctggtgg aagcatcgac tattaaggtc ctccagtccg      5400
     aaaatatcat ccatatccta atagcatacc ctagagttaa gtccatctgc aaaaaaaatc      5460
     accgtcttcc ccgtgtcaca ccatcacaca atattaaagc ttcacgatga catagtagcc      5520
     gaatgcgatg gagatatcct agcagtaacc gagtgcactg caacgaccta ttccaccttt      5580
     tgcaaaaggg cgacacacga cacctgtgcg cgggcacttc acgccggaga cacagctatg      5640
     tgccatacgc agcccagcca tttagaaccg atcacccagg tggacgatgg cgtaataatt      5700
     atcaacgaaa gtgcagcaaa ggttagcaca gacggcggac cagagatttc aacaaacggc      5760
     acgcatctca tcacgtttga gcatcaggca accgtcaacg ggaccaaata tgttaacata      5820
     cgtgaggtcc taaacaaggc gccaggcatc gcggggtctc cactactgaa cattgtaggc      5880
     cacgacccgg ttttgagcat gccactcctt cataggttga atattcaaaa cctaatgacc      5940
     atacaaagat tcaaagatga gataacatcg tcatggccac ccaaatattg gttcggagtt      6000
     ggaataggat tcagcgttat cctcactggt tcacttttcc ttttccaagt gttaaggaga      6060
     aggcgagact cccgagaagc acaagaagct atcagcaggt ttaacgtgac cgaggacggt      6120
     aacggacttg aggggggagt                                                  6140
//
ID   Gypsy-71_DEl-LTR repbase;    DNA;    INV; 562 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-71_DEl-I;
KW   Gypsy-71_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-562
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7064-7064 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 562 BP; 169 A; 118 C; 116 G; 159 T; 0 other;
     agttataaga taactcataa gtttaataaa ctctcgcaac tgcggagcta aacactttgt        60
     aagatataag ataattcata agtttaataa actctcgcaa ttgcggagct aaacactttg       120
     tatcagcgcg ctatagctgc aatggtcagc ggcagcaacc ggagactttt gttatgtcgc       180
     aagagtttct tgttattgtt tacgcttatg ctgagtcggc ttgccgacca tgacattgta       240
     gcgtgatgcg agtttaggtt tagctttagc agaatatttg taatcagttt tgaatgcagc       300
     gctcaaccaa taagtcgctt aataaatatc actactccgg cacttgccgt taattgttat       360
     atcttttatt tattgactga gcccaaggcc agcaatagaa ggtacagtta ctttccacca       420
     taatcttcct actggcaact gcagcggata taaaagccgt cgctggacac atcaaggaag       480
     aggaaactta agtcatccta ctagccatac cggcggacac gggagtcttc gctggacaca       540
     acgcagagga caaaacataa tt                                                562
//
ID   Gypsy-71_LMi-LTR repbase;    DNA;    INV; 1604 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 20.01, Created)
DT   09-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-71_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1604
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (09-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 1604 BP; 391 A; 439 C; 288 G; 486 T; 0 other;
     attagcaggg ggaaaatact gtcccaacat tgacctcgca gagccatacc ttcagatccc        60
     tcaagatctg gcagccaaac agttcacagt cgtcaacagc cccgtcgatc tgtttcagcc       120
     gatgcgtctc atgtttggac tggctagtgc cccagtcatt ttccagaggt acttagaaca       180
     acttttacat gatgtcccgg gctgcattag ctaccttgac aatattgttg tcacaggtct       240
     cactgccaag gctcatctcg ataatcttca tcaatagttt ctccacttcc ggcaggcaga       300
     gctcaagtgt aacacggata tcctatctaa ggcatgtcat atcccaacaa ggcatctccc       360
     ctatgttttc ctacattgac accatcgatt atcttcccac accgaaggac agccatcaat       420
     tgaagacttt ttaggaaaga ttttctatta ccagaatgat tctggcagca gcccaggtgg       480
     ctgcaccctt ataccactta tgtaggaaaa acgttccttt aactgctgtc ctgcttgtga       540
     agctgctttt gccactctga aacaacaact gcagtcggct tcatgcctct tgccttacga       600
     tcataccctg ccactgcaac cgacactttt gattacaggg tgcggatcat ctcctaccat       660
     aagctccagt tgggacagaa tatccagtgg ctttcacctc cagagccttg tcagatgctc       720
     aattaaagta ttcacaaatt gaaaaggatg cgttagccat agtgtttgcc tgttctaagt       780
     gcttgccttt tttatatggg agagcatttc acctcatcac agaccgtagg cctcttcttc       840
     ccttgttttc tttggaggcc cctcttctta ctaagacatc acaacatatg ggccctattt       900
     tcgtcccaat tctggtatac cttatacttc aggtctaaca tgcagctttt aaacgcaggc       960
     gctctttcca attacctctt ggccccgacc caacttctgt gaacttctca tctttcaggt      1020
     tgatgaagac atctgtgacg tccttcatag ttttaccatt acagtctcta ctgggactgt      1080
     cactaccact catgatttgt tgctatttac catctgctcc tatgttcaac aggggtggcc      1140
     caccattcct ccccccatga ccaacagcag ctttgctttt attgaaccat catctgcagc      1200
     atgcattatc attctgcaga aactgcgcac tatggttctg tctcttacat caaggatatt      1260
     gggacatttt tcgcatcaag gtgttggcat gtcaaaactt cttatggtta ggactcacca      1320
     gtgatcactg agattgtatg acattgctca acatgcggca agcaactgcc tagcccacct      1380
     cattttttaa tttcctggcc caagctggca tccccctgga aacgtatcca tatttgttac      1440
     accttttctc taccaccaat ggcttctcat tactaatgtg tttctccatt tatcttttgt      1500
     tgtctgttgt cacagcatga catcagaagt taccctgtct gccctaaaca aagtattctc      1560
     cttgaaaggc ttgcccaaaa tgatagtcac agacaacgga tccc                       1604
//
ID   Gypsy-72_AA-I repbase;    DNA;    INV; 4372 BP.
XX
AC   supercont1.159;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_AA_;
KW   Gypsy-72_AA-LTR; Gypsy-72_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4372
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.159; Positions  467681  472052.
XX
CC   Positions [3416-3892] - Integrase core
CC   'CATG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4333
FT                 /product="Gypsy-72_AA-I_1p"
FT                 /translation="MSDHDKKLEEISREVAEQVISDTDASGEHSAGAVGLI
FT                 RTLFAADQSDREQFEQLNAQDPRYKRRVSDTTIDAMDNEAVKFLVDALRSI
FT                 SVDNVRRFDVRDVKDILVPFDSDVPTTPTAEQWIESIEKAAALYKGDDAWM
FT                 LQCGIINLQGAAKICFTGATVTNWAEFKAKLVQDFPTSVDVVSIHQTMMSR
FT                 KKQPGESLETYFYSHVALGRKGKLPDQATIKYIVSGLDGRYGTIAQVDTLP
FT                 ELLKQLKWLAEVNQLKPIDTSRGSSTKVITKGEAVSGIKCYRCNGVGHVAA
FT                 TCSEKKSTRSAANIECYRCSERGHYAKNCNRSLVKKSTPRVMQEIRQKSNY
FT                 VKSINIDGNSVDALYDCGSAVTTIKESCRGILSNIEMCNMELIGFGGNKVQ
FT                 VRERSSEKIELDGLFMEVTLLVVPNKVQANSVIIGQDILDRDDVRFVKERG
FT                 SVRIEKIDDDRAQKTTLESDPLVQSSSVQPNMYIIRAYEPILPCEINVDGG
FT                 EDERKMVLDVIQRYRHCFAKSYKEMGTAKNCEMEIELVDENPVYVKQYPLE
FT                 YSREKIVEDTVEDLLEADIIQLSKSPYNSPTVLAKKKSGEWRMVVDYRAVN
FT                 AKMVKDKWPMPTIEDCLNRLVGGSMFVAIDLFRGYHQIPLSLDSRKYTAFS
FT                 TPIGHYEYKKMPFGLSNGIAVFQRMIDEVIAPLRRKGFVAYLDDVTFGGKD
FT                 IKEVMGKFELFLNALSENGLTVNLEKTQFLKKKVNLLGYEISEGEVKPGLE
FT                 KICAIKDFPIPTSVRNVREFLGLAYYFRRFVKKFSILVEPLTRLTKKDVEF
FT                 QWKTDQQSAFERLKVVLVSRPVIVMYDPKREIELHTDACSHGLSGILLQRM
FT                 DDGLHPISYFSRKTSSTECNKYSYELEALAVVESVERFRKYVLGRHVKIVT
FT                 DCEAVKKTMAKKQMLPVVGKWLLKLLDYDYEFEHRKGEKMKHADCLSRNPV
FT                 EDFVQEEPEPAMASVMQINIGEDELLKLLQREDEHLYGLMNDLSAPPVDNR
FT                 GRQLHKEYVLQDEGVMRRCNDGLKWVVPTRARWRIARCYHDELGHKGVDKV
FT                 YEAVRRNFWFRRMKNYLKKYIDSCVYCAYMKKKPGHKEGLLHPIEKIPVPF
FT                 DTIHVDHLGPFVRSTLQNEHIIVLVDGFTKYVVLKAVRSTKTKPVIQMLSD
FT                 VFATFGKPRRIITDRGTAYTSKDFEEFCAQLGVTHVKVAVGTPRANGQVER
FT                 ENRNILHSVRCMVKHDDKSWDKQLRLIQWGLNTMVNDTTKVSPHSLLFSYN
FT                 PRDIMQNQLLMMFSVETPLGHSEELNRVVRARIEKEQQRQKMYFDKHRRAA
FT                 RRYQEGDLVLVENDVQATGQSKKLEPRYKGPFIIQKAVGNDRYLIADVPGI
FT                 KLSQKRTSTIFAAERMKPWAVNAAIETSDDEDANNEDYLSDSNED"
XX
SQ   Sequence 4372 BP; 1337 A; 761 C; 1195 G; 1079 T; 0 other;
     attctgtaga caggattctt acaaattgcg cgttaaagca aagtcgcgaa atatcgtttt        60
     cgcggtggca aatgagccaa ttggatggtt tcggaatttg ccgattgtga tgagtgatca       120
     cgataagaag ttggaagaga tttccagaga agttgctgaa caagtgatta gtgataccga       180
     cgcgagtgga gaacacagcg caggggctgt ggggttaata agaactttgt ttgctgcaga       240
     ccagtccgat cgcgaacaat ttgaacagtt gaacgcgcaa gatccacgat ataagcgacg       300
     tgtaagcgat actacgattg acgctatgga taatgaagca gtaaagtttt tggtcgatgc       360
     attaagaagt atatctgtgg ataatgtgcg ccggttcgat gtgcgcgatg taaaggacat       420
     cttggtacca tttgactctg atgttcccac gacgccaacg gcagaacaat ggatcgagtc       480
     tattgaaaag gctgccgctt tgtataaggg tgatgatgca tggatgctac aatgtggcat       540
     cataaatctc caaggagcag ctaaaatttg tttcactggc gctacggtga caaattgggc       600
     ggaatttaaa gcgaaattgg tacaagattt tccgacctcg gtggacgtag tgagtattca       660
     ccaaaccatg atgagcagga agaagcagcc tggagaaagt ttggagacgt atttctacag       720
     ccatgtagcg ctgggaagaa aaggaaagtt acccgatcag gccaccatca agtacatagt       780
     atcgggtctt gatggacgtt atgggactat cgcgcaggtc gatacactgc cggagcttct       840
     aaagcaactg aagtggttgg ccgaagtaaa ccaactaaag ccgatagaca catcacgtgg       900
     atcgtcgacg aaagtgataa cgaaagggga agctgtgagt ggtataaaat gctaccgctg       960
     caatggtgta ggtcatgtag cagcaacgtg tagtgagaag aagagtactc gctcagctgc      1020
     gaatatagag tgctatcgct gtagtgaaag ggggcattat gcgaaaaatt gtaacagatc      1080
     tcttgtcaag aaatcgacgc ctagagtgat gcaagagatt cgccaaaaaa gcaattacgt      1140
     taaatcaatt aatattgatg gtaacagcgt ggatgctttg tatgattgtg gctctgcagt      1200
     taccacgata aaggaaagct gtcgtggaat tttgagcaat attgaaatgt gcaacatgga      1260
     gttgattgga tttggtggaa acaaagtgca agtgagagaa cgtagttccg aaaaaataga      1320
     actggacgga ctatttatgg aagtaacatt gctagttgta ccgaacaaag tgcaagcgaa      1380
     ttcagtgata attgggcaag atatcctgga tcgagacgac gtgcggttcg ttaaagaaag      1440
     gggaagtgtc cgaatagaga agattgacga tgatagagct caaaagacta cgcttgagag      1500
     tgatccgttg gtgcaatcca gcagtgtgca gccaaatatg tatattattc gtgcatatga      1560
     gcctatattg ccatgtgaga taaatgtgga tggtggtgag gatgagcgca agatggtatt      1620
     ggacgtaata cagcgatatc gccactgctt tgcgaagagc tataaagaga tgggaacagc      1680
     taaaaattgt gaaatggaaa ttgagttggt agatgaaaat ccagtgtacg ttaagcaata      1740
     tccgctagaa tactctcgtg aaaaaattgt tgaagacaca gttgaagact tactggaggc      1800
     agatattatc cagttgtcca agtccccgta caatagcccg actgtgctgg cgaagaaaaa      1860
     aagtggtgag tggcgtatgg ttgtagatta ccgggcagtt aatgcgaaga tggttaaaga      1920
     taagtggccg atgccaacca ttgaagattg cttgaataga ctggtgggtg gaagtatgtt      1980
     cgtggcgatc gatctgttcc gcggatatca ccagatcccg ttatcgttgg atagccggaa      2040
     atacaccgcc ttttccacgc cgataggcca ttacgagtac aaaaaaatgc cattcggact      2100
     gtccaatggc attgcggtgt tccagcgaat gatcgatgaa gtgattgcgc cactccgtcg      2160
     aaaaggattc gtagcatacc tggatgatgt aacctttggg ggaaaagata tcaaggaggt      2220
     gatggggaag tttgagctgt ttctgaatgc gctgtcggag aatggattaa cagtgaatct      2280
     ggagaaaaca caattcctga aaaagaaagt taatctgttg ggttacgaaa tcagtgaagg      2340
     tgaagtgaag ccaggattgg agaagatttg tgctattaag gattttccaa tcccaactag      2400
     tgtccgaaat gtaagagaat ttctaggctt ggcatattat tttagacgtt ttgtgaagaa      2460
     gtttagcatt ctggttgaac cgctaacacg gctgacaaaa aaggacgttg agttccagtg      2520
     gaaaactgac cagcaatcgg cttttgagag actaaaagtg gtgttagtaa gccgaccagt      2580
     gattgtgatg tatgacccaa agcgagagat tgagttacat acggatgctt gctcacacgg      2640
     tttgtcgggt atactattgc agagaatgga cgacggtcta cacccgatta gttactttag      2700
     tcgtaaaaca tcatcaacgg agtgtaataa atacagctat gagctggaag ctttagctgt      2760
     tgtggaatcg gtagaacgtt ttagaaagta tgtgttgggc cggcatgtga aaatcgtaac      2820
     tgactgtgag gcagtaaaga agactatggc taagaagcag atgttacccg tggttgggaa      2880
     gtggctgtta aaattattgg actacgacta cgaatttgag caccgcaagg gagagaagat      2940
     gaagcatgct gactgtttga gtcgtaatcc agtcgaagat ttcgtgcaag aagaaccgga      3000
     gcctgcaatg gctagtgtga tgcagataaa catcggtgaa gatgagttgt taaagctttt      3060
     gcagagagaa gatgaacact tgtatggtct aatgaacgat ttgtcggccc caccggtcga      3120
     taaccgtggc aggcaattgc acaaggagta cgtcctgcag gatgaaggtg taatgcgacg      3180
     ctgcaatgac gggctgaagt gggtggttcc aacacgtgcg cgatggagaa tcgcacgttg      3240
     ctatcatgac gagttaggcc acaaaggtgt cgataaggta tatgaagcag ttcgtagaaa      3300
     tttttggttt cgccgaatga agaactattt gaagaagtat atcgattcgt gtgtttactg      3360
     tgcgtacatg aagaaaaaac ctggacacaa ggaagggctg ttacatccaa tagagaaaat      3420
     accagtgcct ttcgatacaa ttcatgtgga tcacctcggt ccgtttgtac gctctactct      3480
     ccaaaacgag catataattg tattggttga tggatttact aaatacgtgg tgttgaaagc      3540
     cgtccgaagc actaagacca aaccagtgat acaaatgttg agtgacgtgt ttgctacatt      3600
     tggtaaacct aggcgaataa tcaccgatag aggaacggca tacacatcga aggattttga      3660
     agaattttgc gcgcagttgg gggtcacaca cgtaaaagta gcggttggaa ctccccgtgc      3720
     taacggtcag gttgagcgtg agaaccgaaa tattctgcac tcagtgagat gtatggtgaa      3780
     acatgatgat aagagttggg acaaacaact ccggctaatt cagtggggat taaataccat      3840
     ggtgaacgac acgacgaagg tatctccaca ttcgctactg tttagttaca acccgcgaga      3900
     tatcatgcaa aaccaattgc taatgatgtt ctcggtcgaa acacctctgg gtcactctga      3960
     ggaactcaat cgtgttgtac gtgcaagaat tgagaaagag cagcaacggc aaaagatgta      4020
     tttcgacaaa catcggcggg cggcaagacg ttatcaggaa ggtgatttag tgctggtgga      4080
     aaacgacgtt caagctactg gacagagcaa gaagctggag ccacgctaca aaggaccgtt      4140
     catcattcaa aaggctgtcg gtaacgatcg atatttgatt gccgatgtgc caggaattaa      4200
     actaagccag aagcgtacgt caactatttt tgcggccgag aggatgaaac cgtgggcggt      4260
     aaatgctgcc atcgagacta gtgatgatga agatgccaac aacgaagact atttgagtga      4320
     ttcgaatgaa gattagttat cgccgggacg ggataagggc tgtagtgtcc gt              4372
//
ID   Gypsy-72_AA-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   supercont1.159;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_AA_;
KW   Gypsy-72_AA-I; Gypsy-72_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-179
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.159; Positions  467502  467680.
XX
SQ   Sequence 179 BP; 58 A; 35 C; 34 G; 52 T; 0 other;
     tgtaaccata ataaatacag acgatcgttg agatccaccc taaagacgtt atcgtatcat        60
     tgtagtcata ttgtgccgat gaagagaatt tggaaataaa agttagttga attcgtacca       120
     cagaaacgaa cgcctcgtgt ttaagttccc tatcggtatc acagagtctc tgctttaca        179
//
ID   Gypsy-72_CQ-I repbase;    DNA;    INV; 6771 BP.
XX
AC   AAWU01040934;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_CQ_;
KW   Gypsy-72_CQ-LTR; Gypsy-72_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6771
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 523-523 (2011).
XX
DR   Genome; AAWU01040934; Positions   25057   18287.
XX
CC   Positions [3512-3973] - Reverse transcriptase
CC   Positions [4997-5473] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..2741
FT                 /product="Gypsy-72_CQ-I_2p"
FT                 /translation="MESYGSFPEERNREEAIDTWYSDLRADMLTEDELNFE
FT                 LIVRDILVDRDRSRMRGCLRSKLKSEQEAGQIPPDRTLKNPVRQEIEIARQ
FT                 KLEEIETQIKNGSAEQIAYMRSRLLHLGARLRLALLSAAEMEKDDLTTIFS
FT                 IVMDHLYYFYYSDEARGNETESGTESENEEPTLEQIIQQAGAAETLQVDKA
FT                 VLLRELEKFRKANEEESRLRNELQALQNDISVGRQQSDMGDQGVQTDDLNF
FT                 LFQQWQISSAGLTIPTCTPTTTSSFSPSPGFLGHPKIKQVPKSVSFNVPST
FT                 YGLGTSYSGGFSSYPSYTLLNNPIPSPYPQPPFGYQNSSLPRYQQPHPPFG
FT                 NPQQFYRPPSNFPPYPQNQNFNYSYYQQTQPLPLPLPLPPPPPPQQQPQPP
FT                 NPQPPRKTRPQQQPQQQPQQQPQEHQQNQVPQTSYLKSLPVSKWGIEKYAG
FT                 DDQGLNLNEFLFIVKSHAMSEKVADDELFNSALHLFSGPALNWYQSMRSTG
FT                 RLYNWDHLVWELRKAFVHPDLDSMVRVKVYLRKQQRNESFQSYNHDMEKLF
FT                 RSMTVQIPEIEKKKLVQQNMRSDYRKQLTFLTIPDLPTLNAVGRMIDAGNF
FT                 SLYNKMFGSEKSVNMVSEPPEKKTEVKKTPQLAPQQTHIQPANTNNNNSRQ
FT                 NQQPGNQNNYQPRGNQDNYQARGSGSNPNQGNQYRANPAANATNTFTQNLA
FT                 QPGGSGLNNSNRTASTPSVLARLVDEWRPPNPNVCYNCGRTQHYHEECREP
FT                 KRVFCLICGFKGFETLNCPYCRKNGIQAVASRAPSSNQQRN"
FT   CDS           2801..5851
FT                 /product="Gypsy-72_CQ-I_1p"
FT                 /translation="MYAAPDEVNQISLLNSDDNRPYAHVKVYGVHTKALLD
FT                 SGSQSTMINDTLFAKLKSKNLKPLNRQIILKTAGGDSLEISGQFMIPFSFD
FT                 GRIKIIPTLVVPRLAVDCLCGMDFWNKFQISPIIQYTAFAEELISPASPKD
FT                 TILNHSEQEMIENIKRTFKTAMPGQLSTTPLISHNIELKEEWIGKPAVRQF
FT                 PYVMSPKVQALVAEELDRMLELGIIERTHSDWALNVVPVIKPTGKVRLCLD
FT                 ARKINERTVRDSYPLPHPGRILGQLPKARYLSTIDLTEAFLQIPLDENSRK
FT                 YTSFCVQGKGLFRFTRLPFGLINSPATLSRLMDRVLGFGELEPNVFVYLDD
FT                 VVVVSETFEEHVRLLAEVSRRLREANLAINVDKSRFGVSELPFLGYLLSTE
FT                 GLRPNPDKIRPIVDYERPTTITKLRRFLGMANYYRRFLPDFSGIVAPLTEL
FT                 LKTKSKIIQWTDEAEQAFIAVKECLISTPVLCSPNFEKEFVIQTDASDVAV
FT                 AGVLTQIQEGQERVISYFSHKLTTPQRNYHPAEKEALAALLSIQAFRGYIE
FT                 CCHFTLITDSSALTHILTTSWKVGSRCSRWSLNLQQYDMTIIHRKGKDNVV
FT                 ADALSRSVAAVSQGAEDEWYGSMKQSVLENPDDFVDFRVINGQLFKFVSTN
FT                 DSPYDHRYEWKIVVPLGDRESIITTNHDDAMHLGYEKTLSRVRQRFYWPKM
FT                 AKDIRQYVQNCGICKEVKGVTVPVVPKMGEMRVADHPWQIIAVDFIGPLPR
FT                 SKKGNQHLLVVVDLFSKWVSLHAVRKIDSSNLCIVLKDLWFHKNSVPQVII
FT                 SDNASCFTSREFKNLLDRFGIVHWLNSRYHSQANPVERVNRTVNAAIRTYV
FT                 RDDQRLWDTRLAELETILNTSTHSSTKLTPYFVTHGHEMFIKGEDHQLVAN
FT                 QEPLPEETMEKNRKKLFGEIYDQVKGNLTKANEVCRKQYNLRHRRFPNSFT
FT                 PGQLVYRKNMRLSSAVDNYNAKYGPQYLPCKVKAKIGTSSYDLEGLDGKAL
FT                 GVWPAAHLKPG"
XX
SQ   Sequence 6771 BP; 2093 A; 1373 C; 1414 G; 1891 T; 0 other;
     attggcgcgc agcgtaaaat caaaaatcaa agatttttat cctttcgagt gggggaagaa        60
     cgatagttgg cacttttatc gcgatttttt tggatttatt atccacgctt tgggatgtgt       120
     gttcgtaaat ggaggttatg tcaaccatat gcttttttct tataggttat attcagaatt       180
     acaagtcgat ttgactccct ttttttgttt taagtttccc ttaaggtatt tttgggtgaa       240
     aaaagttctt atccataatc cttaattaat ttcactttaa gatttgttta tttttttgct       300
     tgattcagtc aaattttgga acttttagtt ttcatcgctt agtagtttaa ttagattatt       360
     ttaaaatgga gtcttacgga tcatttccag aagaaagaaa tcgagaggaa gctatcgaca       420
     cgtggtattc agacctgcgt gctgatatgt taactgaaga tgaattgaat ttcgaattaa       480
     ttgtacgaga cattttggtt gatcgtgatc gttctcgaat gcgaggatgc ttacggtcta       540
     aattgaaaag tgaacaagaa gctggtcaaa taccaccaga cagaactttg aagaatccag       600
     taagacaaga aatcgaaatt gcccgccaaa aacttgagga aattgaaact cagattaaaa       660
     atggtagtgc tgagcaaatc gcctacatga gaagcagact gttgcacctg ggtgctagac       720
     ttaggttggc acttttaagt gcagctgaaa tggaaaaaga tgatctgacg acgatttttt       780
     caatcgtcat ggatcatttg tattactttt actatagtga tgaggcccga gggaatgaaa       840
     cagaatcagg aacagaaagt gaaaacgaag aaccaacctt ggaacaaatt attcaacaag       900
     ctggtgctgc ggagactctt caagtagaca aagcagtact acttcgagag ctggaaaaat       960
     ttcgaaaagc aaacgaagag gaaagtcgtc tcagaaatga attgcaggcc ttacagaatg      1020
     atatttcagt gggacgccag cagtctgata tgggagatca aggggttcag acagatgatt      1080
     taaacttttt gtttcaacag tggcaaattt caagtgcagg tttgactatt ccgacctgta      1140
     caccaacaac aacgtcgagc ttttctccta gtccaggatt tttaggacac ccaaaaatta      1200
     agcaagtccc caaaagcgtt agttttaatg tgccatccac ttacggactc gggacatcgt      1260
     actcgggtgg tttttctagt tatccgagct acacactgtt gaacaaccct atcccatctc      1320
     cataccccca acctccattt ggttaccaaa attcatccct acccagatac cagcaacccc      1380
     atccaccctt tggaaatcct caacagtttt acagaccacc atcaaatttt ccaccatacc      1440
     ctcagaacca aaattttaat tattcgtact atcaacaaac ccaaccactt cccctgcctc      1500
     tacccctacc tccaccacca cccccacaac aacaacctca accacccaat ccccaacccc      1560
     ctcgcaaaac acgtcctcaa caacaacccc aacaacaacc tcaacaacaa ccccaagaac      1620
     atcaacaaaa tcaagtacca caaacaagct atctcaaatc tttacctgtg tcaaagtggg      1680
     gcattgaaaa gtatgctggt gacgaccaag gattgaactt gaatgaattt ttgtttattg      1740
     tgaaaagtca tgctatgtcg gaaaaagtag cagatgatga actatttaat tcggcgctcc      1800
     accttttttc gggaccggcc ttaaactggt atcaatcaat gcgttccacc ggaagattgt      1860
     acaattggga tcaccttgtg tgggaactta gaaaagcttt tgttcatccc gacctcgaca      1920
     gtatggtcag ggttaaagtt tatcttcgca aacaacaacg aaatgaatct tttcaatctt      1980
     ataaccatga catggagaaa ttgtttcgat ccatgacggt tcaaattccc gaaatagaaa      2040
     aaaagaaact ggttcagcag aacatgcgat cagactatcg caaacaattg acgttcctta      2100
     cgattcctga tttaccaacc cttaacgccg ttggcaggat gatcgatgct ggaaattttt      2160
     cattatacaa caaaatgttt gggtctgaaa aatcagttaa tatggtttca gaaccccccg      2220
     aaaagaagac tgaggtcaag aagacacctc agctggcgcc ccaacaaacc catattcaac      2280
     cggctaatac taataataac aactctcgac agaatcaaca acccgggaat cagaataact      2340
     atcaacctcg tggaaatcag gataattacc aagcacgtgg gagtggtagt aatccaaacc      2400
     agggaaatca gtacagggct aaccctgcag ccaacgcgac aaatactttt actcaaaatc      2460
     ttgctcaacc aggtggctca ggcctgaaca attcgaacag gaccgcttcg actccgtcgg      2520
     tcttagcacg tttggtggac gagtggagac ctccgaatcc gaacgtttgc tacaactgtg      2580
     gtagaactca acattatcac gaagagtgtc gcgagcccaa aagggttttt tgtttaattt      2640
     gtgggttcaa gggatttgaa acattaaatt gtccgtattg tcgaaaaaac gggattcagg      2700
     cggttgcaag tcgcgctccg tcgagcaatc agcagcgcaa ttaaatgtct cgcttttgga      2760
     gtcggagttt tctcaaattt gggaaccagc ctccgaaaaa atgtatgcag ctcctgatga      2820
     agtgaatcaa atttccttgt taaattcaga tgataatcga ccctacgctc acgtgaaggt      2880
     ttacggtgtt cacaccaaag cgttgttaga cagtggaagt cagtcaacca tgattaatga      2940
     tactttattt gcaaaattaa aatcgaaaaa tttaaagcca ctcaaccgcc agatcattct      3000
     gaaaacagcg ggtggcgact cacttgagat ttcgggtcaa ttcatgattc ctttctcgtt      3060
     tgatggaaga attaaaataa taccaacttt agtcgttcca cggctagcag tagattgttt      3120
     gtgtggaatg gatttttgga ataaatttca aatttctcca attattcaat acaccgcgtt      3180
     cgcagaagag ttaatctccc ctgcgtcacc gaaagataca attttaaatc actccgaaca      3240
     ggaaatgatc gaaaatatta aaagaacttt caaaactgcc atgccaggac aactttcaac      3300
     aacaccactt atttcacaca atattgaact gaaagaggaa tggataggga aaccagccgt      3360
     tcgtcagttc ccatacgtta tgtcacctaa ggttcaggca ctcgtagcgg aggaattaga      3420
     tcggatgctc gaactgggaa taattgagcg aactcattca gattgggctt tgaatgtagt      3480
     gccggttatc aaacccacgg gcaaggttag gctctgctta gatgctcgaa agataaatga      3540
     aagaactgtg cgtgattcct accctttacc ccaccctggt cgaatcttag gacagttacc      3600
     aaaggcgagg tatctctcaa cgatcgattt gacggaagct ttccttcaaa tcccgttgga      3660
     tgagaactcc cggaagtaca cgtccttctg tgtccagggt aaagggttgt tccggttcac      3720
     cagactccca ttcggtctaa tcaatagtcc agctacgctg tcgagactga tggaccgagt      3780
     gttgggtttt ggtgagctgg aaccaaacgt tttcgtttac ttggacgatg tggtagtagt      3840
     tagcgaaacg tttgaggaac acgtacgact tctagcagag gtctcacggc gactaagaga      3900
     ggctaacttg gctatcaatg tggataaatc gcgttttggc gtttctgaat taccattttt      3960
     aggatattta ttatccactg aaggattgcg tcccaacccg gacaaaattc gaccgatcgt      4020
     agattacgaa cgaccaacaa cgataactaa attaagacga tttttaggaa tggcaaatta      4080
     ttatcgccgt ttcctacccg actttagtgg gatagtagct ccattaactg aactactcaa      4140
     aaccaagtca aaaattattc aatggacgga tgaagctgaa caggcattca ttgctgtcaa      4200
     agagtgtctg attagtaccc cagtgctatg tagcccgaat tttgagaagg agtttgtcat      4260
     tcaaacagac gcttcagatg tcgcggtagc gggggtgtta acgcagatac aagagggaca      4320
     ggagagagta atttcatatt tttcacataa acttacaaca cctcaacgga attaccaccc      4380
     ggctgagaaa gaggccctag ctgccctgct ttcaattcag gcttttagag gttacattga      4440
     atgttgtcac tttacattaa ttactgattc gtcagcgttg actcacattt taaccacctc      4500
     gtggaaagtg ggttcacgtt gcagccgctg gagtttaaac ctccagcaat acgatatgac      4560
     aattatacac cgaaaaggga aggataatgt agtagccgac gccctgtcac gcagcgtcgc      4620
     ggcggtctct cagggtgctg aagatgaatg gtacgggtca atgaagcaga gtgttttgga      4680
     aaatcccgat gattttgtag attttcgggt gatcaacggg caacttttca agtttgtttc      4740
     caccaacgat tctccgtacg accaccgtta tgaatggaag atcgttgtgc ctttaggaga      4800
     tcgcgaatct attataacta ccaaccacga cgatgccatg catctcggtt atgagaagac      4860
     tctttcgcgc gtacggcagc gcttttattg gccgaaaatg gcaaaagata ttcgtcaata      4920
     tgtacaaaat tgtggaattt gtaaagaagt taaaggtgtt accgttccag tggtaccaaa      4980
     aatgggagaa atgagggtgg ccgatcatcc gtggcagatt atcgccgtcg acttcatcgg      5040
     gcccctcccc cgcagcaaga aaggcaatca acaccttctt gtagtggttg accttttcag      5100
     taaatgggtt tcactacatg ctgttaggaa aattgatagt tcaaatttat gtatagtttt      5160
     aaaagatttg tggttccata agaactctgt gccacaagtt atcatttctg ataacgctag      5220
     ttgttttaca tcgcgtgaat tcaagaattt gttggacaga tttgggatag tccattggtt      5280
     aaactctcgt tatcattcgc aagcgaaccc agtagagcgt gtgaaccgaa ccgtaaacgc      5340
     agcaattagg acttatgtca gggatgatca acgcctttgg gacacccgtt tggccgaact      5400
     tgagacaatt ttgaacacta gcacccacag ttccacaaaa cttactccat atttcgttac      5460
     ccacggacat gaaatgttta taaaaggaga agatcatcaa ttagtcgcta atcaagaacc      5520
     actgccggaa gagacaatgg aaaagaatcg aaagaaactg tttggggaaa tctatgacca      5580
     ggtgaaagga aatttgacga aagcgaatga agtttgtcgg aaacaataca atcttagaca      5640
     ccgtcgtttt ccaaattcgt tcacaccagg acaactagtt taccgtaaaa acatgcgtct      5700
     ttcgagtgcc gttgacaatt ataatgctaa atacgggcct caatatttgc cttgtaaagt      5760
     taaggccaag attggaacat cttcgtatga tttagaaggt ttagatggaa aagcactcgg      5820
     cgtttggccc gcagcacatc ttaagccagg gtaaaaatat ctagtttatc atcaataact      5880
     taagttaact tttttggaat taatttggtt ttggagaccc agatccttcg atcgaaatcc      5940
     caactagaat aatttaatta taacactttg ctgcttcttg aaaaaagcta aaaaaaaatt      6000
     agaaataaat tgatgttgct taaatgcgag cacttcgatg gttaagagca aactatttaa      6060
     aataattgca ttacatctgt taaatgcccg atgttggtac tctacatgtc tgcctcgatg      6120
     attgtccgag tcagatatgt taatatgtgt gagaagcctc acggtgtatt tttttttgtt      6180
     cttttgataa gaatgttaca gtatacacag tagtggtatt ctccaatatg aaacaatagt      6240
     tttcgcctca gcctccggac gcggagctga tagcgaacga ttacgatcgt gttgagggtc      6300
     gactgataat aaagcgaccg aattggtatt agttaagaaa ttgatggtag gagtccagtg      6360
     tgaacgataa agggatttgg aataattgcg atgagtgtga aagagacaaa atttgaatag      6420
     cctaggattc gaatttggat gaaagtgata gaatgtttga ttttggaaat gatacgtttg      6480
     accgtgttaa ttatttgata tagcacttgt gagagcgaga attatttttt tgttgcccca      6540
     gtgcattaga agatttttta tttgtagtat aaattggatt ggataaatga atatgaactt      6600
     ttccctcaga aatgcagagg tttgagacag tagagtaaat gtggtcttga ctaagtcgtt      6660
     ctgggagtaa tcataagatt tagtatataa ccgatataag tttagtttac gagcatatta      6720
     accccaaaaa aaattaaatt ctttaatttt tccccctgac ccagggagta t               6771
//
ID   Gypsy-72_CQ-LTR repbase;    DNA;    INV; 1614 BP.
XX
AC   AAWU01040934;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_CQ_;
KW   Gypsy-72_CQ-I; Gypsy-72_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1614
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 524-524 (2011).
XX
DR   Genome; AAWU01040934; Positions   18286   16673.
XX
SQ   Sequence 1614 BP; 448 A; 369 C; 362 G; 435 T; 0 other;
     tgtaaccgat gggttccaat tcgatcatta tctgcccaaa tatgaaatat tttgtttttt        60
     ttatagacta agtacattac atctcttttc gctataaaat ttgatttgct tgcgtaccga       120
     aatcgcagcc cacttcacta tgataaaggt tcatttccaa tgcatgagag tgagttgagc       180
     aacagatctt agatttaaaa gggcagttca ttattaccaa taatcactaa ttggttggta       240
     aatcatgatt cgactagaaa atcatgtatt aaactaacat tagaattaag gcctcttagc       300
     taatggttag gataactaac aaagacgcgc cgctctcatg cacaaccact aggtgtagga       360
     agttaggttg ttgcggcgtt ccagtatggc gagattggga aattcaaact ttgcgtttgg       420
     acttcgcaac gcataagatg accagcagaa tctatgggag agagagaagt ggacccgctg       480
     ggacagacta cctcggagag cggaggatat aaaagggccc cgaagcccta gactcgtcct       540
     cttttgctat ctaatagccg acactagtac gatccagatt gtggttcctc gaacgagtta       600
     attagccgcg tgtgcgagtt gaattaacaa aaaagttaaa atcaggcgtt aagttgaacg       660
     gtaatcacga aatccacccg agtggatagt gtgttgggaa ggtcagcggg gagtgtccga       720
     gtacacgtaa agcgcgcgtt tcgacccgga tgatcacctg gtgagagtta gagggacgat       780
     cctgtcgcgt atgcctgatt taaaataagt ttaagcggcc tcccacacca aataattgga       840
     tcatttggat ccaccccgaa gaactaaagt gcgcgagtga taccgaaaat ctagtgtctc       900
     cgttcgaggc cgttaagacc atccatcaac atatggtccc acaatcctgg aaacccttgt       960
     tctcactagt gagaatgccc cgccgaccat agccacggtc gtcgacgaaa aacccaggcc      1020
     cggcaggcgt ggacgccgcc gttatccgcc atcttgcgac ggacgagtcg ctgatcgagg      1080
     tatgtctgtt cccccttgac ttgcttgctc tctctacaat accctcatcc cggccttcag      1140
     ctatccggtc gtgtatcgcg acctgcagaa gggccccaac cgcgggacgg ccccaacgtg      1200
     catgccatcg tgggattgtt cgcgctccgt tttgttccag ctaaaataaa cccctaaaac      1260
     ccatcccaaa cgtgttaaat tctctttttt tgaatcttta atttagatta gttttagttt      1320
     taagtgcaaa accgtcgaaa aatcactaag gtttctgctt aaaagtaaag taaagtgcgt      1380
     tgaataaacc gtgcgtgtgc gatcgttaat tttgcctttt atatttgctg cacacgagag      1440
     agaagacgat tgtgaggttg ataatgatcg ggtaagtgcc aaattatcgt tcgttcccca      1500
     agaattgccc tgagaagtag ctagccgtgc aaattagctc ctgttgctca taattagaac      1560
     cattttcccc aaaaactcta tttcctacaa agtactagct agtctgtcgt taca            1614
//
ID   Gypsy-72_DEl-I repbase;    DNA;    INV; 6958 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_DEl-I;
KW   Gypsy-72_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6958
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7077-7077 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           959..2383
FT                 /product="Gypsy-72_DEl-I_1p"
FT                 /translation="MKKNSRSLIKKLMFRNNDTDSSGDELIEEYKQLLAQK
FT                 SGGIQAENSESEDCEPSSSRANISLRKSTLDNFIPLNTPSQEPQTMQPEQI
FT                 ASMEAAISEALEGQQRLFDEKLSIIMGELNILKKETPKIEIFKEISIIPGA
FT                 ECNEPLDVIKSVPEFDGKQENYVSWRQAAIAAYKVFEPYLGSSRHYQAVAI
FT                 LRNKVRGPAAAVLASFNTVLNFHAILARLDFTYADKTPAHVIQQELSLSRQ
FT                 GDLPLLKYYDEVEKRLTLLTNKIVMTHDAAAAAVLNNKFREDALHAFVSGL
FT                 KKSLKIAVFPAQPRDLPTALALAQEAESSNDRSIFAASFARHSEEKINKAS
FT                 NYRPTSWKNPPQQSSSPIYEPNQNTGAIKKNPYFTRGKNWGNNQTPSSKQN
FT                 TRPYVENTQARPKPEPMEVDTSSKFRQNTNWRKDQSARSQQKINFMPEEKP
FT                 SEEEYDSVAEAYATEIEDDLDADDICNFLE"
FT   CDS           2365..5463
FT                 /product="Gypsy-72_DEl-I_2p"
FT                 /translation="YLQFFRIKSLLPYITRRLAGQKIKLLIDTGTSKNYIA
FT                 HLPTLKGIVEVDNPFNVRSIHGHTQITKKCLISIFQTKSNFFILNALKGFD
FT                 GIIGLDLLKQVNAKLDFTKNMLQTSSTSEKLQFTKSENVNFIKIDDESVPP
FT                 AIKNAFDNMIKKNCKAFADPDEALPYNINTIATIKTDGEPVYSKSYPHPMG
FT                 VTEFVNSEVKQLLEDGIIRPSRSPYNNPTWVVDKKGTDQNGLKKKRLVIDF
FT                 RKLNQKTVDDRYPXPTISTILSNMGKSKFFTTLDLKSGFHQIELAEKDREK
FT                 TAFSINNGKYEFCRLPFGLKNAPSIFQRAIDDVLREQISKTCYVYVDDVII
FT                 FSKTKEDHVRDIHWVLEELLEAGMRVSQEKSKFFKKSVEYLGFIVSEGGLR
FT                 TSPEKVRAIKEFPQPKTLFDLRSFLGLASYYRCFIKGFASIAGPLTGILKG
FT                 ENGKVSKYQSRKIDIDLNKEQKEAFQKLKEILASEDVLLSYPDFTKPFDLT
FT                 TDASGLGLGAVLSQGGRPITMISRTLRDPEKNFATNERELLAIVWSLKNLR
FT                 NYLYGVKGLRIYTDHQPLTFAVSDKNPNAKLKRWKGIIDDHGAQVIYKPGK
FT                 ENFVADALSRQNINALEDIPESDAATIHSEQSLTYTIDTTDNPVNCFRNQI
FT                 IIEEGNSSSVDHFILFKSKTRHVIKFSDRSDLINTVGDAVNSEVVNAIHCS
FT                 LPILAFIQHPLIERFPSTTFKYSKTFVQDITDKTEQKEIIIAEHNRAHRAA
FT                 QENVKQILRDYFFPKMLRLSTEVTSNCKICSMAKYNRHPTKQTVGQTLVPS
FT                 YVGEVLHIDIFSTDGNLFLTCIDKFSKFAIVQKITSRAIVDVKAPILNIIN
FT                 FFPKTKTIYCDNEKSLNSETIKSILLNNFDISIQNAPPLHSTSNGQVERFH
FT                 STLAEIARCLKLENKLNDTTETILLATSKYNRTIHSVTDKKPIEIVHSTPT
FT                 EVEKKIHEKIQEAQERSLEYVNKNRTHKKYQVGDKVFLKANKRLGNKLSPL
FT                 CSEETIEADLGTTVLIKGRVVHKDNLR"
FT   CDS           5700..6956
FT                 /product="Gypsy-72_DEl-I_3p"
FT                 /translation="MTETLKDDHRTQVIITDLRHIRKLVATLKIHHRDTRS
FT                 INLVGTALKVIAGTPDFDDWEKIKFNQEQLFNAEEGQTELNIKFQERLNAL
FT                 TNSMNQIQNVDRDEEAHLLEIILAKNRIVITDLENVLMGLTLAKLNIVSPA
FT                 ILDNSDISEFKNKQPTNISLVEILEVSSISVFQNSEIIHFLIKFPNSKLVC
FT                 RKITVYPVQHNNKILNFENGDLVAECATRIVNIGSCMATVGATFCKELQGD
FT                 TCAQQMVSGVTAQCSTLPGHLDPVTTIDHGTLIINDAKVTIVDDLGLKQEI
FT                 SGSYLVTYSNSLSINGTWYTNQLGSSRKKPAVSAMTLVNITAHQNRLSLPL
FT                 LHELSLTNLHHIGALRERMTTGSFTTNAVIFFAAISLCFAAWLIHHHRTAK
FT                 HSLKTRNNCDVEATGHRDGDHLKAG"
XX
SQ   Sequence 6958 BP; 2513 A; 1544 C; 1284 G; 1613 T; 4 other;
     ggcgctcaac taaactaaag aacccaacaa acaaaaaagt aataaagtga acaacaaaaa        60
     tcacwcccaa aaaagttaaa caaccacgaa aagccggagt taaaaatwaa taacactaaa       120
     ttgcaagtgt aaaaaagtaa aaaggtttta taaaaaaaaa aaaaatcatc atagttcaaa       180
     aatcataaag tgaacaaaac gaatgaaata aaaaacacac acttagaaaa cggagcaacc       240
     gtgagaagta aaaagtagtt acaagtcata ctgctgctac tggaaaaaat ttttttttgt       300
     ttaaaaacca ccgactaggc gccgctgcca accaaacccc tcgccccgct cgagggtacg       360
     acagaagtca acgaagccac tgccgccagc caaacccctc gccccgctcg agggtacgac       420
     aaccgccagc agtagccgcc ttcatcaacc aaatccctcg ccccgttcga gggtacgaca       480
     accgccagca gtagccgcct tcatcgacca aacccctcgc cccgctcgag ggtacgacaa       540
     ccgtcaacgg aagccgttgc caccgaccgg ccccgcggcc cgcacgaaga acagaaacgt       600
     caccgaagaa gcagccaata aaataaacat gtaagtgggc ttcttgtttt tgttcttgtt       660
     cttgttcgca acgaaaaata aattaaattt caataaagtg gctgtagaac aattctgcat       720
     attgcaacaa atatattttt atacaaakaa aaattcagtt cgcacttcgt gcctgcctac       780
     actgagagaa tattttttgt attctttttc tatataataa ttaaaaatta caaaagttat       840
     tttttcccca aaaatctttt gtaagtgcat ttaagaattc aacttaagca tattaataaa       900
     aattataagt gaaagtttaa aataaataaa tggaataaaa taaatatatt ccatctttat       960
     gaaaaaaaat tctcgctcgc tcataaaaaa gctaatgttc agaaacaacg acacagactc      1020
     atcgggcgat gaactcatag aggaatataa gcaactttta gcacaaaaaa gtgggggaat      1080
     acaagcagaa aatagcgaaa gtgaggactg tgagccctca tccagtaggg ccaatatatc      1140
     cttaaggaaa agtactttgg ataattttat tccattaaat accccctcac aagaaccaca      1200
     aaccatgcag cccgaacaaa tcgcaagcat ggaagcggcc ataagtgagg ccctagaagg      1260
     acagcaaagg ctgtttgacg aaaaattaag tataatcatg ggggaactaa acattttaaa      1320
     aaaagagacc ccaaaaatag aaatctttaa agaaataagt attataccag gagccgagtg      1380
     caacgagccc ctagacgtta taaaatcagt ccccgaattt gacgggaaac aggaaaatta      1440
     cgtatcctgg agacaggccg ccatcgcagc ttataaggtc tttgagcctt acttgggcag      1500
     cagtcggcat tatcaagccg tggccatcct tagaaataaa gttaggggcc cggcagcggc      1560
     cgtattagct tcatttaata cagtacttaa ctttcacgct atattagccc gcctcgattt      1620
     tacatatgcg gacaaaactc cagctcatgt aattcaacag gagttaagcc tttcaaggca      1680
     aggagattta ccgctactta aatattatga tgaagtcgaa aaaaggttaa cacttctgac      1740
     aaataagata gtaatgacgc acgacgctgc cgctgcagcc gtacttaata acaaatttag      1800
     agaagacgca cttcatgcgt tcgtttctgg cttaaagaag tcattaaaaa ttgccgtttt      1860
     cccggcgcaa ccacgggacc tgccaacggc actagctctt gcacaggagg cagaatcaag      1920
     caatgatagg agcatattcg cggccagctt cgctcggcat agcgaagaaa aaataaataa      1980
     ggccagtaat taccgaccaa cctcgtggaa aaacccacca caacagtcaa gctcacctat      2040
     ctatgagccg aaccaaaaca caggggcaat taaaaaaaac ccttacttta ccagaggtaa      2100
     aaactgggga aataatcaaa cgccctcgtc caaacaaaac actcgtcctt acgtagaaaa      2160
     cactcaggcc cggccaaaac cggagcccat ggaggtagat acttcctcta aatttagaca      2220
     gaatacaaac tggcgaaagg accagtcggc acgaagccaa caaaaaataa acttcatgcc      2280
     agaagaaaaa ccgtctgaag aagaatacga ttctgttgcc gaagcgtatg caacagagat      2340
     tgaagatgat ttagacgcag atgatatctg caatttttta gaataaaatc cctgctccct      2400
     tatattactc gtaggttagc agggcaaaaa ataaaattat taatcgatac aggaacatca      2460
     aaaaattata ttgcgcatct cccgacgctt aaaggcatcg tggaagtgga caacccgttc      2520
     aatgtaaggt caattcatgg ccacacacaa attacaaaaa aatgtttgat ttcaatattt      2580
     caaacaaaat caaatttttt tatccttaac gctcttaagg gttttgacgg tattatcggg      2640
     ctcgacttgc ttaaacaagt gaatgcgaaa ctcgacttta ctaaaaatat gttgcaaact      2700
     agtagcacgt cagaaaaact tcagtttacc aaatctgaaa atgtaaattt catcaaaatt      2760
     gatgacgaaa gtgttccacc tgcaataaaa aacgcttttg ataatatgat taaaaaaaac      2820
     tgtaaagctt tcgctgatcc agacgaggct ttaccctaca acataaatac tattgcaaca      2880
     ataaaaacag atggggagcc ggtgtactca aaatcgtacc cacatcccat gggtgtgaca      2940
     gaattcgtaa actcagaggt taaacaactt ctagaggacg gcatcataag gccatctaga      3000
     tcaccctata ataatccaac ctgggtcgta gacaaaaaag gaaccgacca aaatggttta      3060
     aaaaagaaac gattagttat cgattttaga aaattaaatc agaaaacggt ggatgacaga      3120
     taccccatkc cgacaatatc aaccatactg tcaaatatgg gcaagtcaaa atttttcaca      3180
     actcttgatc tgaaatcagg cttccaccag atagaattag cggagaagga cagagagaaa      3240
     acggccttct ccataaataa cggtaaatac gagttttgta gactgccgtt cggcctgaaa      3300
     aacgctccaa gcatttttca gagggccatc gacgacgtcc taagggaaca aatttcaaag      3360
     acgtgctacg tttatgtcga tgacgtcatt attttttcaa aaacaaaaga ggaccacgtg      3420
     agagacattc actgggttct cgaggaactt ctagaagcag gcatgagggt atcccaagaa      3480
     aagtcaaagt tttttaaaaa aagcgttgaa tacttgggat tcatagtgtc agaagggggt      3540
     ctacgaacct cacccgaaaa ggtcagggct atcaaagaat tcccacaacc aaaaaccctc      3600
     ttcgacctca gatcttttct ggggttagcg agttactata gatgctttat taaaggtttt      3660
     gcatctatcg cagggcccct tacgggaatc ctaaaagggg aaaatggaaa agtgagcaaa      3720
     tatcaatcaa gaaaaattga tattgatcta aataaagaac aaaaagaggc tttccaaaaa      3780
     ttaaaggaga tcctagcatc ggaagatgtt ttattgtcat atcctgactt tacaaagcca      3840
     ttcgatttga caacagacgc ctcaggttta ggtctagggg cggtactgtc gcaaggagga      3900
     cgccccatta caatgatttc tcgcacgtta cgcgatcctg aaaaaaactt cgcaacaaac      3960
     gagagagaac tacttgccat tgtctggtcc cttaaaaacc tccgtaatta tttatatgga      4020
     gtaaaaggtt tacgcattta tacagaccac caaccattaa cgttcgccgt ttcggataaa      4080
     aatcctaacg cgaaacttaa acgttggaaa ggaattattg atgaccatgg agcacaggtc      4140
     atttataaac caggaaagga aaattttgta gcggacgcgt tgtcacggca aaatataaat      4200
     gctttagaag atatcccaga atctgacgcc gcaaccatac atagcgagca gtcattaaca      4260
     tataccatcg acacgacaga caacccggtc aactgtttca gaaaccagat aattatcgaa      4320
     gaaggaaaca gttcgtcggt tgaccatttc atcctattca aaagtaaaac tagacacgta      4380
     ataaaattct ctgaccgcag tgatttaata aacacagtag gggatgcagt aaattccgag      4440
     gtagttaatg caatacattg ttccctccca atcttagctt ttattcaaca tccgttaatc      4500
     gaacgattcc cgagcactac tttcaaatat tcaaaaactt tcgtacagga cataactgac      4560
     aaaacagaac agaaagaaat cataattgct gagcacaata gagcacatcg cgctgctcaa      4620
     gaaaatgtaa agcaaatcct acgagactat ttcttcccga aaatgctcag gttatcaaca      4680
     gaagtaactt caaattgtaa aatctgctct atggcaaaat acaatcgcca ccccaccaag      4740
     cagacggtcg gacaaacact agttccctct tacgtagggg aagtacttca cattgacatt      4800
     ttttcaacag acggaaactt gtttctcacc tgcattgata agttttctaa attcgccata      4860
     gttcaaaaaa ttacttctag ggccatcgta gatgtcaaag ccccaatact taatataata      4920
     aattttttcc ctaaaacaaa aactatttat tgtgacaacg agaagtcact taattccgaa      4980
     acaattaaat caatactgct taacaatttt gacatttcca tccaaaacgc acccccctta      5040
     cacagcactt caaatggcca ggtagaaagg tttcacagca ctcttgcaga aatagcgaga      5100
     tgcctgaaac ttgaaaataa acttaacgac acgacagaaa caattttact agcaactagt      5160
     aaatacaata gaacaattca ctcagtaaca gacaaaaaac caatagaaat agtacattcg      5220
     acacccacgg aagtcgagaa aaaaattcac gaaaaaatcc aggaggcaca ggaaaggtcc      5280
     ctcgagtacg ttaacaagaa tagaacccat aaaaaatacc aagtcgggga caaggtgttc      5340
     ctaaaagcaa acaaacgctt gggaaataaa ttgtcaccat tatgctccga agagaccatc      5400
     gaagcggacc tggggaccac ggtccttatt aaagggaggg tggtccataa ggacaatttg      5460
     cgctaacaat ctaaattaag tttatcactt tcaaattttc ttttaggttt acgaaatatt      5520
     tcttactact tacactaacg gctgtaacga caaacgcgac ggttaaactc aacaactaca      5580
     cgaacgcgga ctacattcca atagtagacg gtgacattgt aatctgggac agttacggat      5640
     acctacaaca cgctacaaac ttgacatcct acgaagacta tgcggaccaa acagaaacaa      5700
     tgacagaaac acttaaagac gaccatagga cgcaggtaat aattacggac ctaagacata      5760
     ttcgcaaact ggtcgctacc ctgaaaatcc atcacaggga tactagaagc attaaccttg      5820
     tcggaacagc actcaaggtt attgcgggaa cccccgactt tgatgactgg gaaaaaatta      5880
     aattcaatca ggagcaatta tttaacgccg aggaagggca aactgaatta aatattaaat      5940
     ttcaagaaag attaaatgca ctcacaaatt ccatgaatca aattcaaaac gtagacagag      6000
     acgaagaagc acatctttta gaaatcatct tggcaaaaaa cagaatagtt atcacagacc      6060
     tagaaaatgt tttgatgggc ctaaccctag caaagcttaa cattgtaagc ccagccatcc      6120
     tagataacag cgacattagc gaattcaaga acaaacagcc cactaacatc agtttagtag      6180
     aaattttaga agtatctagc ataagcgttt ttcaaaattc tgaaataatc catttcctta      6240
     ttaaatttcc taactctaag ttagtatgta gaaaaattac agtctaccca gttcagcaca      6300
     acaacaaaat tctgaacttc gaaaatgggg acttggtcgc cgaatgcgca acacgaatcg      6360
     tcaacatcgg aagctgtatg gccacagtag gcgctacttt ctgcaaggaa ctgcaaggcg      6420
     acacctgcgc acagcaaatg gtttctgggg tcactgcaca gtgctccacc ctacctgggc      6480
     atttagatcc ggttaccaca atagatcatg gtacccttat catcaacgat gccaaagtga      6540
     ctatagtcga cgaccttggg cttaaacaag aaatatccgg ttcgtacctt gtaacctact      6600
     ctaacagcct atcaataaat ggaacttggt acactaacca actgggaagc tcaagaaaga      6660
     aacccgctgt ctcagccatg accttggtaa acattacggc ccaccaaaat cgactcagtc      6720
     ttccgttact ccatgagctg agcctaacaa atctccacca catcggcgct ctgagagaaa      6780
     ggatgaccac cggatcgttt accaccaatg ccgtaatttt cttcgccgct atctctctat      6840
     gctttgcggc ctggctcatc catcatcatc ggacagccaa gcacagcctc aaaactagaa      6900
     acaactgcga cgtggaggcg acaggtcacc gggacggcga ccacttaaag gcgggagg        6958
//
ID   Gypsy-72_DEl-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_DEl-I;
KW   Gypsy-72_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-362
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7065-7065 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 362 BP; 112 A; 90 C; 85 G; 75 T; 0 other;
     agttaacacg cgcaaccgaa atgcagaaaa tctgccgaat tgcgcaccgg atacaatagc        60
     ccacacgcgc aaggccaaat tagctgacag cgcattccgg ggctaacgct gcctgcccaa       120
     ctccagcacg cctgcgacga gtgatcgttg ctgggcagac acaaggtgct gaccttgcac       180
     taacgcgact gcgctgtcgc ccaagggagg cctggagttg cagccgcggt aatttataag       240
     ttagtctaaa attgtactcc ggggcttaag cttcgatata aatccgaata attaacctat       300
     gccctaacgg gtgtatggaa ataaaggaaa tataaaaata taaagaacac aattcattaa       360
     tt                                                                      362
//
ID   Gypsy-72_LMi-I repbase;    DNA;    INV; 3882 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-72_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3882
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (17-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(57..572,709..1494,1440..1670,1674..2153,
FT                 2138..3853)
FT                 /product="Gypsy-72_LMi-I_1p"
FT                 /translation="MSEEEPRVSRIAVRLPPFWPNNPVLWFAQVEASFRCA
FT                 GITADSTMFSLVVSQLDQQYAAEIQDIITAPPTADAYKKLKTELIRRVAAS
FT                 QEERIRQVLTQXDVGAVPXNLLRTIXSNRLPPQVKAIIXSQTEVSLDAVAE
FT                 LADRHTSACQKPAAVRRXRRELRVATMIHXXRGSLLVPKCQRRSXLXAADC
FT                 RTGSQRLFXXDRKSGMKFLIDTGXDLSILPRTAIYRCRPPTAFCLSAANNS
FT                 TIXTXGMQSIELDLGLRRALNWNFTIADVAEXIIGADFXAYYRLLPDVANS
FT                 RLVDNVTGLTSXGFRRSTNAPSAKLVQAEDCKYSXLLCQFPTLTXPPGAPK
FT                 QVQXKTVHYXNTTDGPPVSCRPRRLAPDRLAIAKAEFATMLKEGIIRPSRA
FT                 RGLQRFISSLKRVSMRPCGDYRALMQEQYQTVTGSAVARLSTYARTIPDRY
FT                 RFRCCEIIIILTWCNDLRLDCAKLTLKYRWRRKIHLKRQLSRHLAYLKHVY
FT                 DIRFTQCSSDLAKVYFSITRTTFCFAYLDDILIFSATEEQHLKSVFERLEQ
FT                 YGVVLNTTKCIFGQPEIDFLGHRISAAGSLPLPDKVQAILEIQKPNTIKEL
FT                 RRFLGMLNFYRQHLPRAAELQEPLTAALSGPMIKRNSLVQWTEAMNSAFEA
FT                 AKRCLADAALLAHPKLDAPLAVRTISGVVDASLKATGAVLQQWTNGSWQPL
FT                 AFYSHKLSPSQQKWSTYDRELLAIYKAIKYFRPQIEARDFVIYTDHKPLTY
FT                 AFRRNSNNCSPRQYNHLEFIAQFTTKIEHVSGLDNVVADCLSRVNSISSPI
FT                 DFTALAQAQQSDQELQILLKDDNTALQMQLVSVPGTDAKLYCDVSTGRPRP
FT                 FLPTQFRRQAFDNCHGLSHPGIRPTFRLISKRFVWPGMEKNCREWTRSCVP
FT                 CQRSKVSRHVHAPVGNFPDVSSRFAHVHLDVVGPLSPSNGQRYLLTIMDRF
FT                 TRWPEAVPLDNITAETLASAFVSTWLSRFGCPLHITTDRGRQFESDLFAKL
FT                 AQFCGYVHHKTTSYHPASNGLIERWHRSLKSALMCHDTAWTTALPIVLLGL
FT                 RNAYKPDIDASSAELVFGEALRLPGEFVDVNSFQSIVQDQPDLLRRLRERI
FT                 ACFRPQQGSRHGTPYCYIHQDLDKCTHVMLRTDGVKPALQAPYTGPHRVLQ
FT                 RGERTFDIAINGKATTVSIDRIKPAYIYQDASPAEVSREQLKSTKSAPQTQ
FT                 SQSPAQQQPTSVPQPARTTRSGRHVHFPARFRR"
XX
SQ   Sequence 3882 BP; 1039 A; 989 C; 878 G; 949 T; 27 other;
     attggtgacc ccgacgtgat acaagcctgc agaaaacgcg agaagatact agcaagatgt        60
     cggaggaaga acctagagtt tcaagaatag ccgtacgttt gccgccgttc tggccaaata       120
     atcctgtgtt atggttcgcc caagtagagg caagtttccg ttgtgcagga attaccgccg       180
     actcgacgat gttttctttg gtcgtgagcc aattagatca acaatatgcc gcggaaattc       240
     aagacattat aaccgcgccg ccgacagcag atgcatacaa gaagctaaaa acagagctga       300
     ttcgaagagt agccgcttca caggaggaac gcatacggca agtgctcaca caagawgacg       360
     tcggtgcggt tcctgamaac ttgttacgca caatctgsag caaccgcctg ccgccacaag       420
     ttaaggcgat tatagmgtct caaacagagg tgtctcttga cgctgtwgcg gaactcgcag       480
     atcgtcacac cagtgcgtgt cagaagccgg cagcagtacg gcggcawcgt cgggagttgc       540
     gcgtagcgac tatgattcat takcwgcgag ggtagacgtt ctttgtaacc agctcagtga       600
     actgatgtct cgacaaagcg tcaacaaagg cacttcgtct tctgatgcag aacattcgac       660
     atgctggtac caccgtaaat ttggtgaaca ggcacataaa tgtgctagtc cttgctcgtt       720
     cccaaatgcc agcggcgktc gmccttagsc gcggcagact gccgmacagg atcacagcgc       780
     ctgtttwtca kcgacaggaa gtctggaatg aaatttctga tagacacagg ttmtgatttg       840
     agtatattac cacgaactgc aatatatcgc tgccgtccac cgactgcatt ctgtttatca       900
     gccgctaata attcaacgat acsgacttaw ggaatgcaga gtattgagct ggacttaggg       960
     ctacgtcgcg ccctgaattg gaatttcacc atwgcagacg tcgctgagcm aatcatcggt      1020
     gcggatttcw tggcatatta ccgactgttg cctgacgtag csaattcccg gctcgtggac      1080
     aacgtgactg gcctaacttc amctggtttt cgccgtagca ccaacgcacc cagcgccaag      1140
     ctcgtgcaag cggaagactg taagtactca tmtctmttat gtcaatttcc gaccttgact      1200
     agsccccctg gagccccaaa acaagtgcaa cwtaagactg tgcattacak taataccaca      1260
     gatggccctc cagtgtcatg taggcccagg cggctggcac cagatcgact agcaatagca      1320
     aaggcagagt ttgccacaat gttaaaggaa ggcattattc gcccctcgag agcccgtggt      1380
     cttcagcgct tcatctcgtc cctaaaaaga gtgagcatgc gcccctgcgg cgattataga      1440
     gcacttatgc aagaacaata ccagaccgtt accggttccg ctgttgcgag attataatca      1500
     tccttacatg gtgcaacgat cttcgtctag attgtgcaaa gcttacactc aaataccggt      1560
     ggcggagaaa gatacaccta aaacggcaat tatcacgcca tttggcttat ttgaaacatg      1620
     tatatgacat tcggtttacg caatgcagct cagacttggc aaaggtttat tgattcagta      1680
     ttacaaggac tactttttgt ttcgcttacc ttgatgatat cttgatattt tcggccactg      1740
     aagaacaaca tctcaaatca gtgtttgaac gcttggaaca gtatggcgta gttttgaaca      1800
     caaccaaatg catatttgga caacctgaaa tcgattttct cggccatcgt atttcggctg      1860
     cgggctccct tcccttaccg gataaggtac aagctatcct agaaatacag aaaccaaata      1920
     ccatcaaaga gttacgtagg tttctcggga tgctgaattt ttatcgtcaa catctgccac      1980
     gagcagcaga attacaagaa cccttgacag cagcgctttc cggacccatg attaagagaa      2040
     attcattagt acagtggact gaagcaatga attctgcttt tgaggccgcg aaacgttgct      2100
     tggcggacgc tgcattgttg gctcatccta aacttgacgc accattagcg gtgtagttga      2160
     tgcaagttta aaggctacag gtgccgtatt acaacaatgg acgaatggct catggcaacc      2220
     actagcgttt tattcgcata agctgtcgcc ttcacaacaa aagtggagta cttacgaccg      2280
     ggaacttctc gctatataca aggctattaa atatttccgg cctcagatag aagcgaggga      2340
     ttttgttatc tacacagatc ataagccact gacgtatgca ttccgacgca atagtaacaa      2400
     ctgttcacct cggcagtaca atcatttaga gtttattgca cagtttacca ctaaaataga      2460
     gcacgtctct ggattagata atgtggtggc cgactgtctc tctcgagtaa acagtatctc      2520
     aagcccaatc gacttcactg cacttgctca ggcacaacaa tctgaccaag agctccagat      2580
     attgctgaag gatgacaaca cagcattaca gatgcagctc gttagcgttc ccggcacaga      2640
     tgctaaactg tactgtgatg tctcgactgg aagaccaaga ccattccttc ctactcaatt      2700
     tcgcagacaa gctttcgaca attgccatgg tttatctcat cccggaattc gccctacgtt      2760
     ccgcctcata tcaaagcgtt ttgtctggcc aggaatggaa aagaactgcc gtgagtggac      2820
     gcgttcatgt gttccatgtc aacgcagtaa agtgtctcgt cacgtacatg ctccagtggg      2880
     caattttccc gacgtctcct cacgttttgc acatgtgcat cttgacgtag taggtccgtt      2940
     aagtccatca aatgggcaac gttacttact tactattatg gaccgtttca ctagatggcc      3000
     ggaggcggta ccgctggaca acattacagc agaaacacta gcctcagcct ttgtgtccac      3060
     atggctgtca agatttggat gcccactgca tataacaaca gaccgaggca ggcagtttga      3120
     gtcagactta ttcgccaagc ttgcacaatt ctgtgggtat gttcatcaca agaccacaag      3180
     ttaccatcct gcaagcaatg gtttaattga acgatggcac cgatcgctca agtctgctct      3240
     aatgtgccat gacacagcct ggacaaccgc gctaccaatc gtgttactgg gtctacgaaa      3300
     tgcctacaaa cctgacatag acgcttcctc ggcagaactg gttttcggcg aagcgttacg      3360
     tcttccaggt gaattcgttg acgtcaattc ctttcagtcc attgtgcaag accaacctga      3420
     tttactacgt cgcttgcgcg aacgtatcgc atgttttcgc ccacaacagg gttccagaca      3480
     tggcacccca tactgttata ttcatcaaga cttggacaaa tgtacgcacg tgatgcttcg      3540
     cacagacggt gtgaaacctg ctctgcaagc tccgtacaca ggtccacatc gcgtgttaca      3600
     acgaggtgaa cggacatttg atattgccat aaatggcaag gccacgactg tctccattga      3660
     ccgcatcaag ccggcgtaca tctatcagga cgcatcaccg gctgaggttt caagagaaca      3720
     gctcaagtcg acaaagtcag cgcctcaaac tcagtcacaa tcgccagctc aacaacagcc      3780
     cacctctgtt ccacaaccgg cacgcacaac ccgttccgga cggcacgtac attttcctgc      3840
     acgttttaga agataacgct ccgcttccac cgcgggggct ga                         3882
//
ID   Gypsy-72_LMi-LTR repbase;    DNA;    INV; 366 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-72_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-366
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (17-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 366 BP; 93 A; 70 C; 75 G; 128 T; 0 other;
     tgtggtgact aatcatcgtg tactgtacgt cgtcgtcgtg tttataaaga ggattcgcgc        60
     gccgccacag atgttgttgc cgcagcaagt ctgtttattc tttgtttttg cgagtctcct       120
     gttaattgtt tagtacatag ttacgactgt aatcttctgg ttgaaacatt gtgcttttga       180
     tgtgacgatt atactttaac gtaaaacgtc tctcatttgt atttaatgta ttgtatctac       240
     agtcacaggt ctactaaata aattatttca aaaaatggtt tctgcagaga ataattccgc       300
     gttctagcgg cttgaaagat acacgctaac aaaacgtcgg acagttctgc ttcagctgcc       360
     tcgaca                                                                  366
//
ID   Gypsy-73_AA-I repbase;    DNA;    INV; 3958 BP.
XX
AC   supercont1.150;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_AA_;
KW   Gypsy-73_AA-LTR; Gypsy-73_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3958
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.150; Positions 1616449 1620406.
XX
CC   Positions [3069-3581] - Integrase core
CC   'GCAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1803..3941
FT                 /product="Gypsy-73_AA-I_1p"
FT                 /translation="MQNGLCNASQTFQRYMHRLFGDLDFVIIFIDDICVAS
FT                 SSEEEHRQHVQIVFERLKDNGLVINVDKCRFAKKQVKFLGYLLSSDGILPL
FT                 PDRVEAICRYELPTTVKQLRRFLALLNGYKRFVARASDLQAELLQMIPGNK
FT                 KNDGRRLQWTKTGKESFELCKKSLSEAALLCYPDPTKPLGLMIDASNTAAG
FT                 AVLQQLTAAGWRPLGFYSQKFSQSQQSYSTFGRELTAMKMAVKYFRHLVEG
FT                 RQFTIYTDHHPLTNALSSKTSRLPHEERYLQFISQFTTDIRHISGKDNVVA
FT                 DALSRVESIAQLNIDVSGFSVDQTNDMELQRLLRSSSLKLEKRNCVGCSTP
FT                 IYCDVSIQGKIRPYVPVQQRQRVLHTLHGLSHSGIRATRKLVADCFVWSAM
FT                 NKDVHTFVKHCIECQKSKVTRHTRSPLSNFDLPKKRFQHVHVDIVGPLPTS
FT                 NGFRYLLTMVDRFTRWPEAIPLTDILAETVARVFVSSWVSRFGVPQQITTD
FT                 QGRQFESVLFNELNRIMGVQHLRTTAYHPQSNGLVERFHRTLKSALMCNDP
FT                 KHWADKLPLVLLGIRSALKSEFNCSVAELVYGQQLVVPGEFFDAQIKDVNH
FT                 CDYSQQLHQIFDQLSAKKVNHHGKPKVFLQPALTDTKFVFVRTDAVKKSLQ
FT                 RPYEGPYLIIKRHEKFFDLLISGKQQRISIDRIKPAFVLVEDHDQDTDSKT
FT                 KVTPSGHRIRFLV"
XX
SQ   Sequence 3958 BP; 1091 A; 916 C; 909 G; 1042 T; 0 other;
     ttggtgaccc cgacggttcc gacagttatc gtttcgaagt tttatcgcga aaccggtcgt        60
     aaaatcgttt ccgcagtcga aaaattgttt ccactcattc caccgaaagc agccatattt       120
     gttgaacatg acggaggaac gtaacctcgc tgatgcagcg gctgctgctg ttactactgc       180
     ttcggtgtcc gtgaagcttc cagatttctg gaagagcgac ccgtctatgt ggtttgccca       240
     ggcggaagcc cagttcgcgc ttgctggtgt tgtgaaggat gagacgaaat actactacat       300
     catcagcaag atagaccagt ctgtcatctg ccatgttgca gatttaatac aaaacccgcc       360
     ggctaacgac aagtataaac aggagaagga tcggctgata tctcgcttcg aaatttccgc       420
     acagggcaag ctggaatgtc tgttgaatgc ctgtgacctc ggggatatgc ggccaacaca       480
     cctactagca cgtatgcaag agctagcagc aggactcaac atcagcgatg acgtcatgaa       540
     ggttttgttt ctacagcgga tgccggataa aatcaagcca attttgtcga tcagtgacgg       600
     cacgattgct aagctggcgg agatggccga taagatggtc gagataaccc cccacgtcgt       660
     ggcagcagta tctacatccg ttgtgccagg aatagaaatg agcagtttgc aagagcaaat       720
     tgcttgcctg acagctgaaa ttcgtcgaat gaaaacagca gctccaagaa gtcgttccgt       780
     ctcacgatca cgacgcagtt ccagttcagg tccaaccatc tgctggtacc atcggaaatt       840
     cggatcgaat gctcaccagt gtcgtgagcc ttgctcgtac aacgcttcaa aaaactaagc       900
     gaacatccat ctgaaacggc ggaggtggat gttttctctg gaagtcgccg tttacatatt       960
     tatgacagaa ctagtggctt tcgttttttg attgatacgg gatcggactt ttccattatt      1020
     ccggcaacgg ctaaggatcg tcgtaaaccg cctacataat ttcgactgca tgcagctaat      1080
     ggcactacaa ttaaaaccta cgagtctcgt cttgttgcca ctgatttggg cttacgtcgg      1140
     cggttctgct ggaatttcct cgttgcagat gtgaaaacag cgataatcgg tgcagatttt      1200
     ttgtcattct tcggtgtgct ggttgatctt cagcatcgac aattgaccga cgctaaaaca      1260
     aaactgcatt ctttcggcgg attgacggcc accgatatct atggcgtaac aaccattggt      1320
     atgagtcatc catataagga tttgctgctt caatatcgtg aaataaccct accatcaact      1380
     atgcgaacag ctgttccaca acgagaggtc aaacaccata tcgtaacgaa aggcccgcca      1440
     gttgcgttca aaccacgaag attggctcct gacaagttag atgcagcaaa aaaagagttt      1500
     cagttcagtt cgaattggga atttgtcgcc cgtctagtag ctgctgggct agtccgctgc      1560
     actgtgtgcc aaaaaagaat ggacaatgga gattcgttgg tgattaccgt gcattaaaca      1620
     aggtaaccac tccagatcga tatcctgtcc cacacattca tgatttattg aatgcttttc      1680
     agggaaaaag gatcttcact acaatcgacc tggagcgagc gtatcaccag ataccagtcc      1740
     acgaagacga cattgaaaaa acggcggtaa ttactccatt cggtttgttc gagtttttga      1800
     cgatgcaaaa tggactctgc aacgccagcc aaacctttca gcgctacatg catcggttgt      1860
     tcggagattt ggatttcgtg atcatcttca ttgacgacat ctgcgttgcg tcatcgtcag      1920
     aagaggagca ccggcagcat gttcaaatcg tgttcgaacg gctgaaggac aatggcctgg      1980
     taatcaacgt agacaagtgt agattcgcca agaaacaggt gaagtttttg ggatacttgc      2040
     tgagtagcga tggaattctt cccttgccgg atcgtgtaga agcaatttgc cgttacgagc      2100
     taccgaccac agtgaagcag ctacgtcgtt tcctcgcatt attaaatggt tataaacggt      2160
     tcgttgcacg agcaagcgac cttcaagctg aattgcttca aatgattcct ggaaataaga      2220
     aaaacgatgg cagacgattg caatggacca aaacgggcaa agaatccttc gagctgtgca      2280
     aaaaatctct atcggaagca gccctactgt gttaccctga tccaactaag ccgcttggac      2340
     tgatgatcga cgcatcgaac actgcagcgg gtgccgtact ccagcagctg acagcagcag      2400
     gttggcgtcc tcttggattc tattcgcaaa agttttcgca atctcaacag tcatattcaa      2460
     cattcggaag ggagttaacg gccatgaaaa tggctgtaaa gtacttccgt catctagtag      2520
     aaggacgcca attcaccatt tacaccgatc atcacccact gaccaacgct ttatcttcaa      2580
     aaacatctcg tttaccacat gaggaacgct atttgcagtt tatttctcag tttacgactg      2640
     acattcgcca tattagtggc aaagacaacg tggtggccga cgctttgtct cgggtggaat      2700
     cgattgcgca actcaatatt gatgtcagcg gtttttctgt ggatcaaaca aatgacatgg      2760
     agcttcaacg tttactgcga tcatcatccc ttaaactgga aaagcgaaat tgtgtgggtt      2820
     gttcaactcc gatttactgc gatgtttcaa ttcaaggtaa gattcgtcct tacgttcctg      2880
     tgcaacaacg tcaacgtgtc ctgcatactc tgcacggatt atcgcactca ggtatccgcg      2940
     cgacccgtaa gttagtagcc gattgttttg tatggagtgc tatgaataag gacgttcaca      3000
     cattcgtcaa gcattgcatt gaatgtcaga aatcgaaagt gacacgacat actagatcac      3060
     cgttgagtaa ttttgatttg cccaaaaagc gtttccaaca cgtacatgtg gatattgttg      3120
     gtccgttacc tacctctaat ggatttcggt acctactaac tatggtcgat cgatttacac      3180
     gatggccaga agcaattcct ttaacggata tcctagctga aactgttgct cgtgttttcg      3240
     tttcttcctg ggtatctcgt ttcggtgtac cacaacaaat aacaacagat caagggaggc      3300
     agtttgaatc tgtactcttt aatgaactaa atcggatcat gggtgtacaa catcttcgaa      3360
     cgaccgccta tcacccacag tccaacgggt tggttgagcg cttccatcgt acactaaaaa      3420
     gtgcgctgat gtgtaacgat ccgaaacatt gggcagataa acttccacta gtattgctag      3480
     gaatcagatc ggcattgaaa tctgagttca actgttctgt tgcggagctt gtatacggac      3540
     aacagttggt cgttcctgga gaatttttcg acgcgcaaat aaaggatgtc aatcactgcg      3600
     attattctca acagttacat cagatcttcg atcagttgag tgctaaaaaa gtcaaccacc      3660
     atggtaagcc aaaagtgttt ctgcaacctg cattaactga cactaagttc gttttcgtac      3720
     gaaccgacgc tgttaagaaa tcactgcaac gaccgtatga aggaccctac ctgatcatca      3780
     agcgacatga gaaatttttc gacttgttga tttccggaaa gcagcaacga atttccatcg      3840
     atcgcataaa acctgcgttt gtgctagtcg aggatcatga tcaagataca gatagcaaga      3900
     caaaagtcac tccatcagga caccgtatcc gatttctggt gtgactggag gggagtac        3958
//
ID   Gypsy-73_AA-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   supercont1.150;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_AA_;
KW   Gypsy-73_AA-I; Gypsy-73_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.150; Positions 1616262 1616448.
XX
SQ   Sequence 187 BP; 54 A; 40 C; 36 G; 57 T; 0 other;
     tgtggagaca ccctttgctt gtcgcacaac cctaaacagt atatgttttt ggaccaccct        60
     aagagaaaac gtcttcgcca ttgttattgt caccgcgtcg agagttaatg aatcgtaata       120
     aacacgttcg gttaataata gttaatttct cgcagtttta ttgattccgg tgagagaaac       180
     acctaca                                                                 187
//
ID   Gypsy-73_CQ-I repbase;    DNA;    INV; 6996 BP.
XX
AC   AAWU01041308;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_CQ_;
KW   Gypsy-73_CQ-LTR; Gypsy-73_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6996
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 525-525 (2011).
XX
DR   Genome; AAWU01041308; Positions   26141   19146.
XX
CC   Positions [5877-6350] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           386..1738
FT                 /product="Gypsy-73_CQ-I_1p"
FT                 /translation="MTDRILSLRPRKTLVRTVENPIKRSNSLSTKTNISKQ
FT                 LNTSYSGLEKLNLEECQTSSTPIRLSKYCAKSVKKSFEKFENFLKEVNFDK
FT                 SLFDQFLYPELEDTPEAILNKKRETVIQEFLSASAYFDSALKMAQFDFEKA
FT                 LQCIPEFTGNFDDVENFINIADIFHARIGARNADQLNQFLAVIRLKLKEDA
FT                 KERAIDIMADTWQEVQNNLNTLYQEKNTWPEILNSCNKLVQTRQESLEEYR
FT                 RRADKLNRQIKQKGGNDAAEEILKENFIGGLQSTTLMQFAATIEECSYEDL
FT                 ANTILERGKTLERIYEAHKEKMKNSSSNATEGGDGGGNSLRNKNWSNKKNN
FT                 TWRNPVWGHPSNLTQPPPLGPIPQPYTMMPNQMIGWQPNQTQNFGNPNRTL
FT                 VPYGHVQNHENMTMDRWGRGPPQSNQMSQMNNTMNFNPDFNSTFNSNQNST
FT                 QHVPKN"
FT   CDS           3600..6701
FT                 /product="Gypsy-73_CQ-I_2p"
FT                 /translation="MEKIDLGHLNSSHRQSITDIISEFKNTFFIEGDRLTR
FT                 TDAAVHDIETETCIPINKRQYRFPEATKKHIKEQVEEMLEQGIIKPSTSPW
FT                 NAPVLCIPKKPDANGNQKYRMVVDYRALNTITRSFVYPIPLINEILDNIGE
FT                 NSLFTCLDLKSGFYQVSINPNDTEKTAFSTPQGHFEFVGMAMGLKNAPSTF
FT                 QKLMHTVVYELGAVKAFVYLDDIIVFGNTVEDHNDTLKKVLDALSRHNLKI
FT                 EPTKCQMLKTQIEYLGHIIDKNGIRPTDANIKAITNLKRPTNIRQVRSFLG
FT                 TINFYGKFISNIAARRKPLNDLLKKGVKFSWTPQCERAFEDLKQCLISEPL
FT                 LIRPNYKDTFVITTDASDFAIGAVLSNAQTMDQPIAFASRALKGAELRYHA
FT                 IEKELLAIVWATQYFRHYIFNQKFIVYTDHRPLVAIDSLKETSTTLSKLRL
FT                 KLLGLDREIRYKQGRENAVADFLSRIDHDKTEQINPETVGATTRAQLRNQN
FT                 RNNNTSANKGYDSSDDVMFRELSNIDISDGNDDLPEEEYFSKLYEEFRLYA
FT                 EENKSYATEIKNCKTLDNESNCSHTFVIANKKSGFSEISQVYNLPHGARNI
FT                 IQEGNFAFPNDNLYGVMLDGKHNSIIDSKKFFQTFALFYIHTFSECANKRI
FT                 HLISFRKIRQPEILQIIEFAAWKTKTKICFYNNRSEIVNAKADQIQTILQE
FT                 FHDAPLGGHIGARRMIKRISQAYFWKNMNRDILNYVRQCDSCQRHKIHKSN
FT                 KIPMKITTTASEPFEKLYMDIVMFPESHWGNNCALTVQDDLTRFLTIIPIH
FT                 NQEASTVARALVEGVICKFGTPCEIVTDQGTNFMSKMLKEVCKLLHIKKIN
FT                 TSAYHPQANLVERSNRELKQYMRQFVGKDTGSWDQKLPYFLFEYNTAPNES
FT                 TGFSPYELLYGRVARMPASIYKSTTDANYETYLDEIKHLFSSIHKMAKENL
FT                 AVSKVRNKIRYDVNVEDWQPELGDPVMVHDNPMGMGRKLQQLWRGPYLVIR
FT                 LDSEQTSTILNGNKEEKVHNNRLKKYND"
XX
SQ   Sequence 6996 BP; 2463 A; 1334 C; 1347 G; 1852 T; 0 other;
     tgtggtgaca gtcggtaact taaattaatt tagtaattta atttagagta caatgtgcaa        60
     cgtgtcgttt ggagcagtgt tattgtgctg gtaagtacct ttttttttta ctattccccg       120
     gtttgtgttg ggaactactt aattaagtgt gtcgttattt tgttatttcg ttcgttcgtt       180
     attatcatca ccggtacagc cagtagtgag ataatcaaca caatcctgca cacacagaca       240
     tttcctcaga acttgactct agattggatt ttattgaaaa aaattaaaaa cacaaaattt       300
     tagcagattt taaatgtttg caaaataaac ttaaacaaat taactttgat cagtttgtgt       360
     catagtgcgc ttctccaggg tccgaatgac ggatagaata ttaagtcttc gtccaagaaa       420
     aacattagtc cgaaccgtag aaaatcctat aaagaggtcg aactctctct cgacgaagac       480
     aaacattagt aaacaactaa atacgtccta ctcagggcta gaaaaattaa atttggaaga       540
     gtgtcagact tcgtcaacac ccatcaggct cagcaagtac tgcgcaaaaa gtgtcaaaaa       600
     aagttttgaa aagttcgaaa attttcttaa agaagtcaat ttcgataaaa gcctttttga       660
     ccaattcctg tatccagaat tggaagatac acccgaggca attttgaata aaaaacgcga       720
     aacggtaatt caagaatttt tatcggccag tgcttatttt gacagcgcac ttaagatggc       780
     tcaatttgat tttgaaaaag ccctccaatg tataccggaa ttcaccggta atttcgatga       840
     cgttgaaaat ttcatcaaca tcgctgatat tttccatgct agaattgggg cgagaaacgc       900
     cgaccagcta aaccagtttt tagctgtgat tcggttaaag ttaaaagaag acgccaagga       960
     gagggcgata gatattatgg ctgatacttg gcaagaggtt caaaataact tgaacactct      1020
     gtaccaagaa aaaaatacat ggccagagat tcttaactct tgcaataaat tagtacagac      1080
     tagacaagaa tccctggaag aataccgccg cagagctgat aaactcaata ggcaaattaa      1140
     acaaaaaggg ggaaacgatg cagccgaaga aattttaaaa gaaaatttca tcggtgggct      1200
     gcaaagtacc accctcatgc agttcgctgc aactatagaa gaatgttcat atgaagacct      1260
     ggcgaacaca attctagaaa gaggcaaaac gctagaacgt atctacgaag cacacaaaga      1320
     gaagatgaaa aattcttctt caaatgcgac tgaaggcggt gatggtggcg gaaacagcct      1380
     cagaaataaa aattggagca ataaaaaaaa taacacgtgg agaaacccag tatggggtca      1440
     cccaagtaac cttacacaac ctccaccgtt gggtccaatt ccccaaccat ataccatgat      1500
     gccgaatcaa atgattggat ggcaacccaa tcaaactcag aactttggta atccaaacag      1560
     aacactagtt ccgtacggtc atgtacaaaa tcatgaaaac atgacaatgg acaggtgggg      1620
     tagaggtcca ccacaatcaa atcaaatgag tcaaatgaat aatacaatga acttcaaccc      1680
     agattttaat agtacattca atagtaatca aaacagtacg caacacgtac caaaaaacta      1740
     atacaagggg acgtacaagt cggatacggc tcagtcccct ttaaaataga tcaaagcgct      1800
     ggtaattata ttggcttcaa agctaatcaa gaaattatag ttccagtaga caaaaccgtt      1860
     ggaaaacata tggccatcca actagctact ataaccaacc cacaaacgcc ttcaagttac      1920
     atgttagata cggggtcacc gaataactac attcataaag atcaccttga agttataggt      1980
     ttaagtatgc agaatataaa tcattatgac aggcacaccg ttcaagggat cggcaaacag      2040
     ttaacacaga cttgtggttc gatatgggta aaattgataa ttggagaaag tacattccct      2100
     atcaaattcc acgttctgga taatatgata gttccagcaa tcattgggct ggaattttta      2160
     aaaaaccaca cctcaacaat tggaagttgc tttgattata ttacatttca acgctttcca      2220
     gtaaagaaat caccgaataa cacgaaacaa aatacgaaaa acgactacca taaggaaaca      2280
     ataaacgaac aaaaatccca acgtattgga aaaaccgtaa taatacaagc agaagcagca      2340
     attgcaacat gtggtgcaat tgacaccaca aaatccatgg aacaggctat actggaaagc      2400
     gctatcgatc ttgatgctca ccaagattgc gatttcctca cgcagaaaaa tgttttgtag      2460
     aatcagcctg tacgaggttt gattcaacaa aatattttgt tgaatataat caacaaattt      2520
     tttgcattaa atcaactctc atgttttgtt gtttcaaatc gggttttttt gttgatcaaa      2580
     atttgacaga agctcgttca aatcagattt ttgttgaagc aacgtcaatt ttttgttgaa      2640
     acaaccctga ttattttttc aaaataaggt tagtctttca attgaattaa caaatgttga      2700
     ataggaataa aaatagtcat tatttattga tatttgcatt ttttttatcg gatacaaaac      2760
     aattcgatgt ggtcttccaa gtgttgcact ttgttcggtc catgtgccgt ttcgctgctt      2820
     ttgaaccgca cctggtggca ccgccgcctc ctgatgaacc gacgagtttg taaagttgcc      2880
     tcccgcgttg aatgagccat gttgtcattg gcgttccggt aaaccgtggt tacgttgttt      2940
     tccgcagaag tctgcaagga tggtagagga tcaaaaaggg tcatttgaag taaaatgcta      3000
     gagcggctta ccaagcatgt tccgtcgagt ggttggggag tttcgtgaat ctgcaaaaca      3060
     tctttaactt ctagagatgg caacttgcgc atatcaattg ttgctgatga ggtggcctag      3120
     ctggtggagg tgaattctgc ccgaatagcg ctctgacttc tcgcattgta taaaacttcg      3180
     ctcgccgtaa gcgacgggat cgggatcaaa cacacgaatg aaattctcgc acggaacaaa      3240
     acttgtccac tcaaatcaaa ttcaagaaaa acttaacatt ttgacatata gcgggcacgt      3300
     gtaaacagca tttaatttaa ttaaaatcaa aaaacatagt taagttgatt caacgccgat      3360
     tattgtagaa tcaacgcaat atttttgttg atatttccaa aaagatttgg caaaacacac      3420
     agagtagatt caactcaaaa ttttgagttg tttcagttgg ttttgagatc tgtttcaaca      3480
     aaaaatcgtc aagtgaaaac aacaaaatat tttgtcgatt caaataggcc tgatattttt      3540
     gcgtgctaga atacaagaac cataaagaga taaaaggtcc tcaacgagta gctactctga      3600
     tggaaaagat agatctaggc catttgaatt catctcatag acaatctatt actgacataa      3660
     tctctgaatt taaaaatacc ttttttatag aaggggatcg ccttacgcgt actgacgcag      3720
     cggtacatga tatcgaaaca gaaacctgca ttccgattaa caagcgccaa taccgatttc      3780
     cggaagcaac caagaagcat ataaaagagc aggtcgaaga aatgctagag caaggaatta      3840
     taaaaccaag cacgagcccc tggaacgcac cagtcctttg catcccaaaa aaaccagatg      3900
     caaatggcaa ccagaagtac cggatggtcg tagactaccg agcacttaac acaattacta      3960
     gaagtttcgt gtatccaatt ccattaataa acgaaattct ggataacatc ggtgaaaata      4020
     gtctcttcac atgcctagat ttaaaatcgg gtttttacca agtttctata aaccccaatg      4080
     ataccgaaaa gacagcgttt tcaacgcctc aagggcactt cgagtttgtt ggtatggcaa      4140
     tggggctcaa aaatgcccca agtacctttc aaaaactgat gcacaccgta gtttacgaat      4200
     taggggctgt taaagcgttc gtatatctag acgacataat tgtttttggg aatacagtgg      4260
     aagaccacaa tgatactctc aaaaaggttc tagacgctct aagcaggcat aatcttaaaa      4320
     tcgaaccgac aaaatgccag atgttgaaaa cacagattga atatttaggg cacattattg      4380
     acaaaaatgg tatccgccct actgatgcaa atattaaagc cataactaat cttaagcgac      4440
     caactaatat tcgacaggtt agatcatttt taggcactat aaatttttac ggtaagttta      4500
     tttctaacat cgccgctaga aggaaaccat taaatgacct tcttaagaaa ggcgttaaat      4560
     tttcatggac tccccaatgt gaaagagcat tcgaggattt aaaacagtgc ctgatatcgg      4620
     agcctctact gatcaggccg aattataagg acacttttgt aatcactaca gatgcaagtg      4680
     attttgccat tggggcagta ctatccaatg cacaaaccat ggatcaaccg atcgcttttg      4740
     caagtagagc attgaaaggt gccgagcttc gataccatgc tatagagaaa gaattactag      4800
     ctattgtatg ggcaacccag tatttccgac actatatatt taaccaaaaa tttatagtgt      4860
     atacagacca caggccactg gtcgctatcg atagcctgaa agaaacgtct accacactct      4920
     caaaacttcg ccttaaattg ttagggctag accgtgaaat tcgctataaa cagggaagag      4980
     aaaatgctgt tgcagatttt ctatctcgaa ttgatcatga taaaacagaa caaatcaatc      5040
     cagaaactgt tggcgcaaca actagagcgc aactcagaaa ccaaaatagg aataataata      5100
     cttctgcaaa taaaggctac gattcatccg atgatgtgat gtttagagag ctgtcaaaca      5160
     ttgatattag tgacggaaat gacgatttac ccgaagagga atacttttcg aaattatacg      5220
     aagaatttag attatatgcc gaagaaaaca agtcatacgc tacggaaatt aagaattgca      5280
     aaaccttaga caatgaatca aattgcagtc atactttcgt gatagcaaac aaaaagtcag      5340
     ggttttccga gatttcccag gtttacaatc ttccacatgg cgcaagaaac ataattcaag      5400
     agggaaattt tgcatttcct aatgataatc tttatggggt gatgctagat ggtaaacaca      5460
     attctataat cgacagcaaa aagtttttcc aaacatttgc tttgttctac attcacacct      5520
     tcagcgagtg tgcaaataaa cggattcatc taatatcgtt tagaaaaatt cggcagccag      5580
     aaatcctgca aattatagag ttcgccgctt ggaagacaaa aacaaagata tgtttctaca      5640
     ataaccgctc agagatcgtc aacgcaaagg cggatcaaat tcaaactatc ctccaagaat      5700
     ttcacgatgc acctttgggc ggccacattg gggcccgcag aatgataaaa aggataagtc      5760
     aagcatattt ctggaagaat atgaataggg atattttgaa ctatgtgcgg cagtgtgact      5820
     cctgccaaag acacaaaatt cacaaatcaa acaagatacc gatgaaaata acaacaacgg      5880
     cttcagagcc ttttgaaaaa ctatacatgg atatagtaat gttcccagaa tcacactggg      5940
     gcaataactg cgctttgact gtgcaagatg acttgacacg attcttaaca atcattccaa      6000
     ttcataacca agaagcctct acagttgcta gagcgttagt agaaggtgtg atttgtaaat      6060
     ttggtacgcc atgtgagata gttacagatc aaggtacaaa ttttatgagt aaaatgctga      6120
     aagaagtctg taagttactt cacataaaga aaatcaacac aagtgcctat cacccacaag      6180
     caaacttggt cgaaagatcg aatcgagaat tgaagcaata tatgcgtcaa ttcgtcggaa      6240
     aagacaccgg gtcatgggat cagaaattgc catattttct ttttgagtac aacacggcac      6300
     cgaacgaatc tacgggattt tcaccgtatg agttactata cggaagagtg gcaagaatgc      6360
     cagcttcaat ctacaaaagc acaacggatg caaattacga aacgtatctg gacgaaatta      6420
     agcacctttt cagcagtata cataaaatgg ctaaggaaaa ccttgctgtt agtaaagtaa      6480
     ggaataagat aagatacgat gtaaatgttg aagattggca accagagctg ggagatccgg      6540
     ttatggttca cgataacccc atgggtatgg ggagaaaact ccaacagcta tggagggggc      6600
     cctatttggt aattagatta gatagcgagc aaacttcgac cattcttaat ggaaataaag      6660
     aagaaaaggt tcataacaac cgacttaaaa aatataatga ttaatttccg aagatggcct      6720
     ttaaaacatt caaacccttg ggtagaagta agccgaaaaa accgctgagg tacaaaaaaa      6780
     agggcttttt taatttttat ggaacttaga aaataacaaa catcattaat aatagagcta      6840
     atgcctcgtg gcaagttttt ttttctcttt ctttccatac aaatttcagg catcccttgg      6900
     attagcaacc agaggaaaaa cgcacaccat tcaaggaggg agagggcgac ttaacgcatt      6960
     gatgacacta aaacgctgga attctatctt attaag                                6996
//
ID   Gypsy-73_CQ-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   AAWU01041308;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_CQ_;
KW   Gypsy-73_CQ-I; Gypsy-73_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-136
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 526-526 (2011).
XX
DR   Genome; AAWU01041308; Positions   19145   19010.
XX
SQ   Sequence 136 BP; 41 A; 26 C; 25 G; 44 T; 0 other;
     tgctaggccg cggtagttgt aacatcgatg tcagtaatta tttagaaaca taatatagtt        60
     gttagagata aactttgatc tttaaattac tttaatatca catcatatgc gccaatcctt       120
     accgctcggc ggcgca                                                       136
//
ID   Gypsy-73_DEl-I repbase;    DNA;    INV; 5176 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_DEl-I;
KW   Gypsy-73_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5176
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7035-7035 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 5176 BP; 1924 A; 917 C; 1063 G; 1271 T; 1 other;
     aattcagaag tggtcaaatc tacgccatga acgagaataa tttgaaccaa tttacggtcg        60
     tccagctgaa aagatggctt tcagcattgg gcttatcaac ccaaggtgtt aaaaccgagt       120
     tgatggctcg tctagggcag ataccgccag aacaacgagg tcaagtacca gaggcagaag       180
     ttgaccaaaa tgctggagaa gatcaagctg gcgtctctgg aacagaacgt gaagaggtta       240
     acaccaaccc tgaaagggca tcgcaggcac aacaggatgg cgtctccggc gatgttgcag       300
     accgggacga ccttctagaa attatcacgc agctgcaaac aacaattatt gcgcagcaga       360
     atgcgttgcg gcgagcggag acgcgtggcg ccatgcagca acaacagtta gaagggatcg       420
     ccatacaaca acagcaacag caggctgaaa cttgcggtac catacaacaa cagcaacagc       480
     aggctgaaac ttgcggtacc atccaacaac aacaacaggc agagacacac gttgcgcgcg       540
     aacagccaat tggagatgca tcagatggca acgccagcaa tccaacttca atcgctatag       600
     gaaacggatt aggtggcaac gcggaaggtg aacggaatga aacacaggga gttccatcgt       660
     ccagggctgg atcagcagct tcactctcgt ttgccagaga agctgccatc gacttcgacg       720
     gaaacatttg tgcacgcaac tgggtggatc accttaagaa cataggccaa atctacaact       780
     tagataatga ctgcctaaga atgctactcg ttaccaaatt aaaaggtaat tgccagcgtt       840
     ggctgcacgc caacccatcc cgaatactag attcttttga acgactgtgc gaacaactaa       900
     tcatagcatt tggaaacacg gcgtccaaat cagagcgtcg ccgcaaattc gagcaacgga       960
     aatggcaaaa ggacgagaga ttcacaatgt atttcgagga taaaacaatg atgtcccaag      1020
     ccatcaacat ggacactgag gaactgctcg aacaactcat cgaaggaatc ccatctgcaa      1080
     gtttgcgtga tcaagcccgt attcaaaggt tcgcaaatcc ggagcagatg ctgctagcat      1140
     ttgccaatat acgtcttcca caacagcccg gaacatacgc acccaagaag tcgacgttgg      1200
     aagcgacgca gatcaacaac ttgcgctgca ggaactgcaa ctcgaagggc catttcgcca      1260
     aggaatgccg caagccagca agggcacctg gatcttgttt cgcatgcgga gaaatgggtc      1320
     attttgtggg agaatgccgc cagaggaaga gcaacaccta caacaatagc aacaacaaca      1380
     acaatagcaa cgacaacaac tatgtaagaa aagtagtaat ttttttcgat caccacctca      1440
     attcacatat tattgcagaa tgtctcatag actcaggaag cgcgatatca ttcattaagc      1500
     agtccagaat tccagctgca ttatcattaa gtaacgttaa ccaagtttat catgggctga      1560
     accagagcca acttaacatt tttggaaaaa cttcatgttt cgttttaaaa gaaaaattaa      1620
     agattaaatt tgatatgatt gttgtagcaa atgaatctat gaggcacgac gcagtcctgg      1680
     gaagggactt tatgaatctt tatggtttga gcatgaatct cgacaccctt gaaacttatg      1740
     gaaatattaa tgacwtatta aaaatagatg cccatggctc aaacctaaca cctgggaaaa      1800
     aggatcaaca actagcaatt accgcagaag ccaactgcga ttccaacgag aattttaacg      1860
     agaccgttag ggaaaaatct ttagaaaatg aaacgactgg cgaaaaagtt tgtaaaaatg      1920
     aaaaactgtt aggaaaggca actgttaatg aaaaactgtt aggaaaggca actgttaatg      1980
     aaaaattgtt aggaaacgaa actgttaatc aaaaattgtt aggaaataca actgataatg      2040
     caaagttttt agaaaatgaa tttattaatg gaaaatggtt aagaaatgca aatattaatg      2100
     aaaaattttt aggaaatgaa tcgattaatg aagaattgac aggaaataaa tattttaatg      2160
     aacgatcaga ggcaactata gagagaagtt tgccagaaaa gacaagtagt accggaaaaa      2220
     gtttaagaga gactgttaac ggtgttcaac tggaaaatga gaatattaat aagcaacaaa      2280
     ctattagaaa tgagtcaaca tacaggcaaa ggaaaacaga gatgcctcga ggtgaaaaaa      2340
     cagaaaattt tgaagacagt tttgaaagag atatgttaga tatcaacgta gctgatgatc      2400
     agtttgtaga ctacaactgt gggagcgatg taagctatca aacgaaatgt aaatttgtta      2460
     aaatgtttga agaatattat gtcaacgcta aaagaccaga tactccttta acaagatgcg      2520
     aaatgaaaat tagtttagac aaatccaaac ctttcagttg ttcaccaagg cgactttctt      2580
     ttactgaaaa ggatcagctt caaaaattat tagacgaata tttagacaat ggaattataa      2640
     ggaacagtga ttcagaatat gcttctccca ttgtactggt aaagaaaaaa acaggagact      2700
     tgcgtttatg tatagactat cgaaaattaa acaaagtttt aataaaggac aattatccat      2760
     tgcctttaat agatgacctt ctagacaaat tagtaaataa aagtgtattt tcaaagctcg      2820
     acttgaaaaa tggttacttt cacgtattcg ttagcgatga gtcagtaaaa tatacttcgt      2880
     ttgtcactcc attaggacaa tttgaatttt taaggatgcc tatgggcatt aagaatgcat      2940
     cagcagtatt tcaacgcttt gtaaataaaa tttttgcgga tttgatacgg gaaaataaag      3000
     taatcatata catggatgac attatgatag caagcaaaga tgtggaagaa catttaagga      3060
     ctttaaaaga agttttaata agattagtta acaataagtt agagcttcgt atggacaaat      3120
     gcgagtttat gcaatccaac ataaagtacc taggtttttt tattaccaaa gaaggaatca      3180
     gagcagacga cagaggtatt gatgcaatta aaaatttccc aattcccgaa aaagtacata      3240
     acgtacaaag ctttttagga ctatgttcct attttagaag gtttataaaa gatttctcca      3300
     cattagctaa gccactttat gacactttaa ggaaagacaa ggaattttct ttccaagaaa      3360
     gagaactaga ctgtttcttg aacctaaaaa aaaaactaat agaatcacct gttttagcca      3420
     tatataatca taaagatgag gttgaattac attgcgatgc aagcgctatg ggtttcggtg      3480
     cggttttatt gcaaaggaag ggagatggaa aactccatcc cgtattctac ttttcaaagc      3540
     gaagtacaga gactgaggca aaataccaca gcttcgagct ggaaaccctt gctatcatct      3600
     atgccctgcg tagatttcga atctatcttc atggtaaaca ttttaaaata ataaccgact      3660
     gcaattcctt aactctgaca ttaaacagag tcgaactaaa tcctagaatc gcccgatggg      3720
     cacttgaact gcagaattat gattatgaac taattcatag atccggaaca aaaatgcaac      3780
     acgtagatgc tctgagcaga tgttatattt caatagtaga aaccactagt tttgaggaca      3840
     atcttttaat ctgtcaatca aaagatatcg atatacagaa aattaaggaa gaattagaaa      3900
     aaaatcaact caaacatttc gaaatgagaa acggcgttgt gtacagaaaa acgaatgacg      3960
     atcgtttact attttttgtc cctgaggaca tggaacgtca cgtcttgcat aaatatcata      4020
     atgaacttgg tcacgttggt agagacaaga tgatagatgc aatttcaaag agttattggt      4080
     ttaaaaatat taaggaaaaa tgcaagaatc acattgagaa ttgtttaaaa tgcgtagcat      4140
     tctcaccaaa tactggaaaa tcagaaggct ttttacacag tatccccaaa ggagacaggc      4200
     cgtttgattt gttgcacatc gatcattacg gaccagtggc agcaggaaga gcaaacaagc      4260
     acattttcct aatcatagat ggttttacga aattcgttag actttataca acaaagacaa      4320
     caagcacaaa agaagtaatt aaagctttat ccgattattt tagagcgtat agcaaaccaa      4380
     aatgtatagt ttcagataga ggcagttgtt ttacatctaa tgaatttagt gaatttttaa      4440
     cagaaacaaa catcaaacat ttgaaaatag cgacaggttc tccacaagca aatggtcaag      4500
     tggaacgcat aaacaggagc atagggccca tgatagccaa attaacggag cctgaaaata      4560
     atgtacattg ggataatgta atcgaacaag ttgaacatgc acttaataac actgtacaca      4620
     gaagtataag acaaattcct agcaaaatgc tgtttggtgt agagcagaga ggtcagatta      4680
     ttgatgaatt tagggataag ttagaagaaa ttaacaacac agcccgagta gagaatttgg      4740
     atgagattcg aaaactggca atagagaaac aaatacaagc gcagaaatac aatgaaacat      4800
     attatgataa gacaaagaaa aagccaaagg attacacgaa aggagattac gtaatggtaa      4860
     aaaattttga cagcactgcg ggagttgcta ggaagttgat cccaaaaaac aaaggcccat      4920
     atacaattgc taaagtgctt cgcaatgaca ggttcttact aaaggatgtt gaaggttttc      4980
     aagtgtctcg aaatccatac aagggtgtat ggagtgctca aaacataaga ccctggatag      5040
     gaaaacgaaa aaataaatga agaaaataca tgtaactaaa cactgtctta gtataagata      5100
     gatataagag taatttgtca aaattgtttc caaaagaaac caggatcagg ggatccgtat      5160
     tacaggatgg ccgaat                                                      5176
//
ID   Gypsy-73_DEl-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_DEl-I;
KW   Gypsy-73_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-235
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7066-7066 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 235 BP; 90 A; 39 C; 40 G; 66 T; 0 other;
     tgtagtaggc tcatacacac actaacacac ttatattatt ataccgatac ttacacaata        60
     caaataatta taaaacacca atatacgata tttatgttaa gagttatgtt aaacctatgt       120
     taagtaacat gaactgtaag aggatctctc cgagaggtca ttctgaaact tggagtgtga       180
     gcgagtggta gcattaagac gtgtgagaat aaagaatagt taaacaccta ccaca            235
//
ID   Gypsy-73_LMi-I repbase;    DNA;    INV; 6082 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-73_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6082
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (18-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           4308..5618
FT                 /product="Gypsy-73_LMi-I_2p"
FT                 /translation="MPQGLTEAMDIEEPTTEFRVLLMKDLDNTHIYLKMCK
FT                 NMARLQREDPHWCDIIEKVRTGTNKKLNDLYQIHNDVLFHRRHHQSTKWCV
FT                 CIPTAFIERLIWHTHLVWGHCGIQRCTDKIGRYCHVINLRRTVQNIIRKCQ
FT                 ICQKAKPSNHGARGMLHHIICEEPLKIVSIDVMGPLPCAKGNVKYIVGVYD
FT                 LFTKYIKLYPIRTNSAVSIIKKIAHEYIPSVGKPCAMLSDNAANFTGKKWR
FT                 KFLQDNNIKQILISRFHPEGNPIERLFRELNRFIRTYCHHKQTMWVEYLKQ
FT                 FEEIYNNLSHTSTNYTPTELIYDVKEDNEWVNCLPQITGNEESREAKIRQA
FT                 IINIKSMAQQRKKYFDRHLKRIQEFVIGQKILLRCHPKSSKLKKINRKWQL
FT                 KYAGPYIVLGIPNPGAYLLAYPVSGNVKGVYPHQDLKPYFVKD"
FT   CDS           join(481..1206,1200..1460,1436..1759,1791..2267,
FT                 2234..4057)
FT                 /product="Gypsy-73_LMi-I_1p"
FT                 /translation="MVLTRNQFRMAHAQENIQQLSNEQQPQDPMSLVLLRI
FT                 QQLSVEFQTSQAELKNEFQASQAALVALRSELQATKSDIQTQMIDSXTAIN
FT                 SAIQGITETQRKLTSEFEEFREHHSHLPEAFDLMKTELHAVKQNQEQLTSN
FT                 VAQLSAIVEDITSGQRDIIKKQVAQQSHEFTEVFQQWIDNKENQISSTVKE
FT                 KVHEVLKEADLEREIANSEFRKGLEEMRKQLGEDFLEWRAAIDKQVTDVSS
FT                 VQRITFNPDTFNNDTLSIENHDRVTTKGSISREXKYEKSEERTQPSXIFVH
FT                 TVTTDMRNDHDHARKQEKLIKLMXFSTFNPDKGLYILSRQRSVHPIIFIKA
FT                 FKGALPRVWTEQQKIGFXSGYIVGEGRLWAIEASETCETYEAFEKAFVSKY
FT                 WSDAIQXRVREQIYKPEPYNPKLGTLRRYFEKYHNKTKYLSQRGKLPPYIE
FT                 EKLLHVNDTNFDDFLVAVDAVDKLLERQRTMSTYGNGSNRQLFSNEEQGNQ
FT                 QQKWGNNNNSNANRQLGPTNGNNNENSWGNRQNMSKYRNKRQERRFNPWNQ
FT                 NNSGPMNSQGNSDSPNQGNVTKDDWRNLSXIITDVTDEQVPINNQRQENTS
FT                 TDKQPETGKLNATYFGLESKVASGEWGSNGSIKMLRFNDGLDIREELVQED
FT                 RPCNFKPKNIPQAAIQVKIAGLDIMAILDTGASINAMXMNLMKKLKERIDV
FT                 PILPVVNCRILGAVGGRSRNVKLQARITLELGNGAXMCTCLVVPDLVVDLL
FT                 LGNEFLREMKAIIDFAMGKLILNRREGPXIVDLVHKQEIHGRYCKPIAIKL
FT                 IXREHVKEXNYPTSNNMSDMSSVRQQXKQKVKEAVALMPIQSNELQQLLHE
FT                 YVQVFDEKPGMIRGYLCHLNVAPHNTYCHRYYSIPCALKVAADIEIKRMLT
FT                 WGIIESSTSQYCSPLLVVPKSDGSVRLVLDARQINKIILPVRTQPPNIEEL
FT                 IQKFSGVKIFSTIDLRSSFWQVPLDKESRKYTAFLYAGRSYQFTVLPFGLN
FT                 VSSGIFISALDTVLGMELRDLITPFVDDTLIATKTWNEHKEILKRVLDKFS
FT                 YSGVTVNLKKSKFALTETNFLGHLITTYGILPAKKKITAIENAPAPRNRTQ
FT                 LKAFLGLASFYRRFLSNQVLNSEPLLNLLKKNVTWQWSQECQQAFDNIKTA
FT                 LVNAPILYHPDMELDFGVMTDYVHMDGSCYSKFKNQWEIYFLSLH"
XX
SQ   Sequence 6082 BP; 2187 A; 976 C; 1209 G; 1693 T; 17 other;
     aatctggcaa aaatttgtga caggacacgt aaaatcttgt aaacaattgc ctatacaaca        60
     catacacttg ataaaagtaa ctataaacat tatttatgta tgtattatta ttatttgtgg       120
     ctaactgatt tttttatttt gtttcatgta aaccattgca catatttacg cacgagttgt       180
     tgctgatctg tacatcgtag accactgctg catgtcaaca caacgcagac atcgaaaagt       240
     aggtgcattt gtatttctat caaagctgac tcttctactg aatgtaaaat tatttgaaga       300
     agataggttg tctcaatttg tagtagacta gatttttttt agagatttat atcattttct       360
     ttatttgtgt cttatgtgtg tctggaaatt agatttctga tttgtgcgag tgtcagaaag       420
     gttacataat tttagggttt taattaggga tctgaccttc aattattaat agctgagttt       480
     atggtgctaa ctagaaacca gtttaggatg gcacatgcgc aagaaaacat tcagcaatta       540
     agtaatgaac agcagccaca agatcctatg tcgctagttc tattgcgaat tcaacaactt       600
     tccgtagaat tccagaccag tcaagccgaa ttaaagaatg agttccaagc sagtcaggcc       660
     gcattagttg cattaagatc cgaattacag gctacaaaat ctgacataca aacacaaatg       720
     atagattcts agacagccat aaatagtgca atacagggaa ttacagagac gcaaagaaag       780
     ttaacttcgg aattcgaaga gtttcgtgaa catcatagcc atttaccaga ggcgtttgat       840
     ttaatgaaaa cagaattaca cgctgtaaaa caaaatcaag aacagctgac gagtaatgtt       900
     gcacaactgt cagcgattgt agaagatatc acgagcggcc aaagagatat tattaagaag       960
     caggtcgcgc agcaatcgca cgaatttacg gaagtattcc aacagtggat tgataataaa      1020
     gaaaatcaga ttagtagcac tgtcaaagaa aaggtacatg aagtgttgaa agaagctgac      1080
     ttagaaagag aaatcgctaa ttctgaattc aggaaaggtt tggaagagat gaggaaacaa      1140
     ctgggagaag attttttaga atggcgagct gctattgaca aacaagtcac agatgttagc      1200
     agcgtataac ttttaacccg gacacattta acaatgacac cttgtcgatc gagaatcatg      1260
     atagagtaac aactaagggt agcatctcta gagaawataa atatgaaaaa tctgaggagc      1320
     gaacacaacc tagcgkaatc tttgtacaca ctgtaacaac ggatatgcgt aacgatcatg      1380
     atcatgcgag aaaacaagaa aaattaatta agcttatgca wttttcgaca tttaatccag      1440
     acaaaggtct gtacatccta taatttttat taaagcattc aaaggtgcgt taccaagagt      1500
     ttggacagag caacagaaaa tcggttttkt gagtggttat atagtgggtg aaggtagatt      1560
     gtgggcgatt gaagcttcag aaacgtgtga gacatacgag gcatttgaga aagcatttgt      1620
     ttcaaaatac tggtcagatg ctattcaaga sagagtaaga gaacaaatat ataaacctga      1680
     gccttataat ccaaagttag gtactcttcg aagatatttt gaaaaatacc acaataagac      1740
     aaaatattta tcacaacgat aacagccaaa gatttgatac gmatacttaa ggaaaattac      1800
     caccatatat agaagagaag ttattgcacg tcaatgatac aaactttgat gatttcttgg      1860
     tagctgttga tgcagtggat aagttattgg aacgtcaaag gactatgagt acatatggca      1920
     atggaagtaa cagacagtta ttcagtaacg aagaacaagg aaatcaacaa cagaagtggg      1980
     gcaacaataa taatagtaat gcaaacagac aactaggacc aaccaatggg aataataatg      2040
     aaaacagctg gggcaacaga cagaacatga gtaagtatag aaataagaga caggaaagaa      2100
     gatttaatcc atggaaccag aataattccg gaccaatgaa ttcacaggga aattctgatt      2160
     caccaaatca aggaaatgta actaaagatg attggagaaa cctttcksca ataatcactg      2220
     atgttacaga tgaacaagta ccgataaaca accagagaca ggaaaactaa atgcgaccta      2280
     ctttggcctc gaaagcaagg tcgctagtgg tgaatggggc agcaatggaa gcataaaaat      2340
     gttacgattt aacgatggac ttgacattag ggaagagtta gtgcaggaag atagaccgtg      2400
     caacttcaaa ccaaagaaca ttccacaagc cgcaattcag gtgaagattg caggattgga      2460
     tataatggca attttggata ctggagccag tataaatgca atgamwatga atttaatgaa      2520
     gaagctaaag gaaagaatag atgtacccat actacctgtg gtaaactgta gaatactagg      2580
     agctgttggt ggacgctcta gaaatgtcaa actccaagca agaattacct tggaactagg      2640
     taatggagca wttatgtgca catgccttgt ggttccagat cttgtagtgg atttattgtt      2700
     agggaatgaa tttctccgtg agatgaaagc cattatagac ttcgccatgg gaaagctcat      2760
     attaaataga agagaaggtc cawtaatagt agatctagtt cataaacagg aaatacatgg      2820
     gagatattgc aagccaattg ccataaagct tattawccga gaacatgtta aagaaagwaa      2880
     ttatccaaca agtaataata tgtctgatat gtctagtgtg aggcaacaga kaaaacaaaa      2940
     agtaaaagaa gctgtagccc taatgccaat acaaagcaat gaattgcaac aattgctgca      3000
     tgaatatgtt caggtatttg atgagaagcc tggtatgata agaggttatc tttgtcatct      3060
     taatgttgcg ccccataaca cctactgcca ccgttattat tcaatcccgt gtgcacttaa      3120
     agttgctgca gatattgaaa ttaaacgtat gctaacttgg ggaattatcg agtcttccac      3180
     aagtcaatat tgtagtccat tacttgtagt gcctaaatca gatggcagtg tacgattagt      3240
     tctcgatgcc agacaaatta ataaaattat tcttccagtc cgaactcaac cgccgaatat      3300
     agaagaactc atacagaaat tttcaggtgt caagattttt tccaccattg acctgagatc      3360
     atcgttctgg caggtaccac tggacaagga atcaaggaaa tatacggcat ttctttatgc      3420
     aggaaggagt tatcaattta ctgttctgcc ttttgggcta aatgtaagct caggaatttt      3480
     tatatctgca ctagacacgg tattaggaat ggagttgcga gatttaatca ctccatttgt      3540
     tgatgatacg ttaattgcca ccaagacttg gaatgaacat aaggaaattt taaaacgagt      3600
     tctagacaaa ttcagttatt caggtgtaac agtaaatctg aagaaatcga aatttgcatt      3660
     aactgaaacc aattttctag ggcatttaat tacaacctat gggattcttc cagcaaagaa      3720
     gaagatcact gcaatagaaa atgcaccagc accaaggaat agaacacaac taaaggcttt      3780
     tctgggtttg gcatcattct atcgtcgatt cctttctaat caagtcctaa attcagagcc      3840
     attgttaaat ctgctaaaaa agaatgtcac ttggcagtgg agtcaagagt gtcagcaagc      3900
     atttgacaac atcaagactg cacttgtcaa tgctcctata ctgtatcatc ctgatatgga      3960
     acttgacttt ggggtaatga cggattatgt tcatatggat ggatcatgtt attccaaatt      4020
     caaaaatcaa tgggaaatct actttctgtc attgcactga ctaactgtga gcgggcatat      4080
     cgactacaaa ctagaagcac tagctgtggt gtggtctttt agaaaatttc attagtattt      4140
     agctggagcc tacacctatg tatactgtga catcaagccc tagttttctc aacagctgca      4200
     agttgttaca tcaaagacta gcaaggtgac cttgattctt caggaacaga ttcgaaatta      4260
     catatgtcca gggcaaagac aatataattg cagatgcatt gtcaagaatg ccacaagggt      4320
     tgacagaggc tatggatata gaagaaccaa ccacagaatt tagagtattg ttaatgaaag      4380
     acctggacaa tacacatatc tatcttaaga tgtgtaaaaa tatggcacgt ctacaacgtg      4440
     aagatccaca ttggtgtgat ataattgaaa aagtgagaac aggaacaaat aaaaaattaa      4500
     atgatctata tcagatacac aatgatgtct tatttcatcg aagacaccat caatcaacta      4560
     aatggtgtgt atgtattcca acagcattca tagaaaggtt gatatggcat acacatttag      4620
     tatggggaca ttgtggaatc caaaggtgta ctgacaagat aggaagatac tgtcatgtaa      4680
     tcaaccttag gagaactgta caaaacatta taagaaagtg tcaaatatgc cagaaagcta      4740
     aaccctctaa tcatggagca aggggaatgt tacatcatat catctgtgag gaacctctaa      4800
     aaatagtaag catagatgta atgggacctc tgccctgtgc caaaggaaat gtaaaatata      4860
     ttgttggggt atatgatttg tttactaagt acataaaatt atatcccata cgcacaaatt      4920
     ctgcagtgtc aatcatcaag aagattgctc atgaatatat tccgagtgta ggtaaaccat      4980
     gtgcgatgtt atcagacaat gcagcaaact ttactggaaa aaagtggaga aaatttcttc      5040
     aagataacaa tataaagcag attttgatat caaggttcca cccagaagga aaccctattg      5100
     agagattgtt ccgagagctg aataggttca taaggacata ctgtcatcac aaacaaacaa      5160
     tgtgggtaga gtatttaaag caatttgaag agatatataa caatttgtcg cacacttcca      5220
     ctaactatac accaacagag ttgatatatg atgtgaaaga agacaatgag tgggtaaact      5280
     gtttacctca aataacaggt aacgaagaat ctagggaggc caagattcgt caagccatta      5340
     ttaacattaa gagcatggct caacaaagaa aaaaatattt tgacagacac ttaaagagaa      5400
     tacaagaatt tgttattgga caaaagattt tgttaaggtg tcatccaaaa tcatcaaagc      5460
     tgaagaagat aaatagaaag tggcaattaa aatatgcagg accatatatt gtattgggaa      5520
     tacccaatcc aggcgcatat cttttagcat accctgttag tggaaatgtg aaaggtgttt      5580
     atccacacca ggaccttaaa ccatattttg ttaaagactg aatatgaatc agatgtgtaa      5640
     attttagtta gaaataggtt tttcttatgt gatgaattat gtttcttttt ttaggcttat      5700
     catcaaactg tttgcctgat aagacattgt catttaattg tctaattttt tttatttctc      5760
     tttcagatga ttgttatgta gtaatgtatt ctttttatct tggttaggta tgcattatct      5820
     atattacagc tgctgatcta ctgcagacag aataaacaat aaatttagaa caaataagta      5880
     gattccgaat ttctatggga tattaaaatg gaatatatta gttctgttct ttctcgaatt      5940
     aatattctgt agagagagtt ggctgtgata gaactacaaa tgcatattta aaataaaata      6000
     aaaaagagaa gaagttacta atagggcagg agttcagctt cattaaaact caatcattca      6060
     gctgtactcc tggggaggcc ag                                               6082
//
ID   Gypsy-73_LMi-LTR repbase;    DNA;    INV; 648 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-73_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-648
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (18-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 648 BP; 216 A; 101 C; 117 G; 214 T; 0 other;
     tgtagtagta catttagtaa atttagtaat tcatgtgaca gtgatttcga atatatagtg        60
     gcagagatat tccttaatat atttcgtgta gtgctgtgaa ctgtggagct taagactctt       120
     tgtcagagat tgttttatgt ttgttctctg gttgtggttt acgaagatat gttgtggcat       180
     gttctaaaac tgaatgtacg tttggttaat caaaaactat tattattatt tacgaagcaa       240
     caataaaaga atattaacct gaaattaatg agagtctgcg aagtcatttt tttaatataa       300
     agtatacaaa caacttcaaa cgaccacttc aagaatttga tgaaggtgag atataatcca       360
     gtgttctgga tactcttatt tactaatcag attgaagcaa gttacagaag acctcgtcag       420
     cagtgtgtct gtgtggcgct gaacgaagag atccacgaac ctgcattaaa cacggcgacg       480
     aatatctttc aaaaattgtt tacaagtcat cctataaatt ttctttcttc tttcagccta       540
     caacagaagt gcagactgct ggcaaaaaac aaactggttc tattaatgtg tctgtgtaca       600
     ttacgacaac acattacaca aaattacaat tagaacagta ccattata                    648
//
ID   Gypsy-74_AA-I repbase;    DNA;    INV; 5007 BP.
XX
AC   supercont1.281;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_AA_;
KW   Gypsy-74_AA-LTR; Gypsy-74_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5007
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.281; Positions  681308  676302.
XX
CC   Positions [4144-4485] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..4021
FT                 /product="Gypsy-74_AA-I_1p"
FT                 /translation="MDQPRMPLLVPRVPVPNIVGSTPVRRTPQSSGPVQQQ
FT                 AYSTQGGLDQRILAPVAPAPSAPNEQGFGDNSEGKVPELHQHPLSEDLQQS
FT                 SVGQTLSNLVGALDALNFKLSSMERTQQAQQYQLQQMQQNLVPSQAEPPPA
FT                 AASRSNGFEHWSDLSIFHQPRVWPGNVAPLTMPNANNGNQWPTVPPAMLHR
FT                 NNAPPCVGQHAGQHTGQNLCANPTFNSVPHSTRAENVGFTASRTFDVPKPL
FT                 FKGDLEQSHPVEFLQDVDRYVDSVRLEQNCKLPFALSCLEGEARTWARGFG
FT                 YLLVNYDQFRFHFLQQYWGQRAQRLVREEIMYGNYTIKTPSRMAEYFLALI
FT                 TKARHLDTAPSELELVLHLTQHFPRSVGARLSNCSDIQSAYTLLQTEDHHH
FT                 NTYNRNVSRARAEVNQSSTMASANAGNRPWRGQQNNNNDGQWNRNVRATVA
FT                 ELEDEGGAEVHSVANIFVGSDELLAEYEVSGQPKHEKSPLIEARIDSLVKL
FT                 VLLDSGSELSCIDKALYHDLKSRGIPLGEFPVQNTTIQGAYGKKKMTISNQ
FT                 VFVSVYIQNETIDVCLAVVEELCSPLIFGMDTLHYLKAQMDFQRRDVCLTL
FT                 NGREVVLPFCADDSSRPQRSAQLCRIEVGEVCEPPAKDSTNSSPLDGDFKR
FT                 SDEEQAKLDLLLEEFADIFSDVPGLTTEYEHEIRVTDDVGFNQKQYPIPYR
FT                 YVNKVREQIDKMEMWGIISRESTAYINPLVVTMKKSGDVRVCLDARRLNAV
FT                 MEKDNEKPSDVQQIVQKFHDTRIFSLIDLTSSYWQIPIKPSHRKFTGFLFE
FT                 TRSYVFNVLPFGLCTAVASFSRAMDVILGPEILEFIEKYLDDLLVKSSLFN
FT                 EHLEHLRKLFTRLRVAGLTISASKSEFCKIKLKFLGHIVGQDGVSIDPDKV
FT                 SAIQQFPEPSDQKSMKSFLGLASYVSRFTPKYASVAKPLYALLRADAWWRW
FT                 SDEERQAFSAVKQLILRHTTLRYPLLDKEFCVQTDSSYQGLGAMLFQWDDQ
FT                 NDRMVISYASRLLQAAERNYTATELEALAVVWSLNKWRQYLLGTQFTVYTD
FT                 HKALIFLKQCQLLNGRLTRWILFLQQFNFDIQHCRGKDNEIADALSRYPEG
FT                 STPTSLRSSERQFVLARLTAEEKGFRQLMRQLPVQQQTDEALLPLYLISTD
FT                 GVHRSGTREFTVVDDVLFVKNNPKAGWKNVIPRKMIGVVLRFYHEQSGHYG
FT                 LQKRSKQ"
XX
SQ   Sequence 5007 BP; 1463 A; 1134 C; 1178 G; 1232 T; 0 other;
     tagcgtgggg gctcaaccgg gattgatatt atctcccgat gccgtatatg agatgagatg        60
     atatgacaaa gaaaattaac cttaattcga aaagacaata gtggcgacat actacacgaa       120
     acatgagggt gcgcttctaa tagttcgcaa aagagatgta ttacctctga agaaaattag       180
     ttatatcgag atgccgatgg ctgtatattt tacacggatc agttccagat tattatcaaa       240
     ttatcaaggc atgcgaaagc cttgaatagg tgagtagcgt tcctgtttct atacataagt       300
     ggtttggacc tacctggtct tattattccc caggaccctc atctcacaca ccgacggatc       360
     atctaccgtc atggaccaac caaggatgcc gttactggtg cctcgagttc cagtccctaa       420
     tatcgtggga tctactccgg tccgaagaac acctcaatca tcaggtccgg tgcaacagca       480
     agcatattca acccagggag gactcgacca gagaatcctt gccccagttg ccccagcacc       540
     atcagcaccg aatgaacagg gatttggtga taactcggag ggcaaggttc cagaattaca       600
     tcaacacccc ctctctgaag atcttcagca gagcagcgtt gggcagacac tgtctaatct       660
     agtgggggcc ctagatgcgc tcaactttaa gctgagttca atggagcgaa cacagcaagc       720
     tcagcagtac cagttacaac agatgcaaca aaatttggta ccatcacagg cagagccgcc       780
     accagcagcc gcttctcgtt cgaatggatt cgaacattgg agtgatttga gcattttcca       840
     tcaacccaga gtatggcccg gtaatgtcgc gccattgacg atgccaaacg ccaataacgg       900
     aaatcaatgg ccaacagtac ctccagcgat gcttcacaga aacaatgcac caccgtgcgt       960
     cggtcagcat gccggtcagc ataccggtca aaatttgtgt gcgaatccga cattcaactc      1020
     cgtacctcac agtaccagag ctgaaaacgt tggtttcacg gcctctagaa cctttgatgt      1080
     cccaaaacca ctcttcaagg gtgatttaga acaaagtcat cccgtcgaat tcctgcaaga      1140
     tgtcgatcgt tatgtagatt cggtcaggtt ggagcagaat tgcaaactac cattcgccct      1200
     ttcctgcctg gaaggagaag ctagaacatg ggccaggggt tttggttacc tgctagtaaa      1260
     ttacgaccag ttccgcttcc atttcctcca acagtattgg ggacagcgtg cacagaggct      1320
     agttcgagaa gaaattatgt atggaaacta tacaataaaa actccatcca gaatggccga      1380
     atattttttg gcgctgatca ccaaagcacg tcacctggat accgctccat cagagttaga      1440
     gctagttttg catctaacgc aacactttcc tcgtagtgtc ggggcacgac tgagtaattg      1500
     ctctgacata caatcggctt ataccctact acaaactgaa gatcatcacc acaacactta      1560
     caatcgaaac gtgtctagag caagagccga agtaaatcag tccagtacga tggccagtgc      1620
     gaatgccggc aaccggcctt ggagaggtca gcagaataac aacaatgatg gacaatggaa      1680
     tcgcaacgta agagctacgg tagccgaact agaagacgag ggaggggcgg aagttcattc      1740
     cgttgcgaat atctttgttg gttcggatga acttttagcc gaatacgaag tgagtggtca      1800
     gcctaagcac gagaaatcac ctctgatcga agcccgtatc gacagtttag tgaagctagt      1860
     cttgctagac agtggtagcg aacttagctg catcgacaaa gccctgtatc acgatttgaa      1920
     gtccagagga attccactgg gggagtttcc tgttcagaat accaccatac agggcgccta      1980
     tgggaaaaag aaaatgacaa tttcaaatca agtattcgtt tctgtttata ttcagaacga      2040
     aaccatcgat gtttgcctag cagttgtaga ggaactttgc agcccattga tatttggcat      2100
     ggacaccttg cattatttga aagcccagat ggattttcaa cgccgcgacg tctgtttgac      2160
     tcttaatggc agggaagttg tgctgccgtt ctgtgcggat gattcaagtc gacctcagcg      2220
     atctgcacaa ttatgccgta ttgaagttgg agaagtttgt gaaccgccag cgaaggattc      2280
     aaccaacagc tctccactgg acggagattt caaacgaagt gatgaggagc aagctaaact      2340
     tgatttgctg ttggaggaat ttgctgatat attctccgat gtgcccggtc ttacaacgga      2400
     atacgaacat gaaatccgcg taacggatga cgttgggttc aaccaaaagc aatatccaat      2460
     cccctaccgc tacgtcaaca aagtccgtga acaaatcgat aaaatggaaa tgtggggaat      2520
     catctctcga gaatcaacag cctatattaa tccattggtg gtcactatga aaaagtcggg      2580
     agatgttcga gtgtgtttgg acgcccgccg tctgaacgcc gttatggaga aggacaacga      2640
     gaaaccctca gatgtgcagc agatagtgca aaaatttcac gacactcgta tcttctcctt      2700
     aatagatctt accagctcgt actggcaaat accaatcaaa ccaagccacc ggaagttcac      2760
     tgggtttctg tttgaaacaa ggtcgtacgt attcaatgtc cttccatttg gattatgtac      2820
     agcagtggcc agtttttccc gtgcaatgga tgtcatattg ggaccagaga ttctagagtt      2880
     tatcgaaaaa tatttggatg accttcttgt gaaatctagt ttattcaacg agcacctaga      2940
     acatctccga aaattattta ctcgacttcg ggttgctggg ttgactatca gcgcatcgaa      3000
     aagtgaattc tgcaaaataa aactcaaatt tctggggcat attgttggac aagatggtgt      3060
     tagcatcgac ccggataaag tgtcagccat tcaacagttc cccgaaccca gtgatcagaa      3120
     atccatgaaa tcctttctgg gactagcaag ttatgtgtca agatttacgc ctaaatatgc      3180
     gtctgttgca aaaccactct atgctcttct ccgagctgat gcatggtgga gatggtccga      3240
     tgaagagcga caggcattta gcgcagtgaa gcagctaatt ttacgccaca ctactcttcg      3300
     ttatcccctc ctggataagg agttttgcgt ccaaacggat agttcgtacc aaggactagg      3360
     ggccatgtta ttccaatggg acgaccagaa tgaccgaatg gttatatcgt atgctagtcg      3420
     gctattgcaa gcagcggaac gaaactacac tgctaccgaa ctggaggcgt tggcggtggt      3480
     gtggtcgctg aacaaatggc gacaatactt gttggggacc cagtttacag tttacaccga      3540
     ccacaaagcc cttatcttcc tgaaacaatg tcaactgctc aacggccggc taacaagatg      3600
     gatcctcttc ctccagcagt ttaattttga cattcagcat tgccggggaa aagataacga      3660
     aatagccgat gcgttatcac gctatcctga aggaagcacg cctacgtctt tgcgttcatc      3720
     agaaagacag ttcgttcttg ccagacttac tgcagaggaa aaagggttcc gtcaactgat      3780
     gagacaacta ccagtacaac agcagacgga tgaagccttg ttacctctat acttgatctc      3840
     tacggatgga gtccatcgtt caggaacaag agagtttacg gtggttgatg atgtgctttt      3900
     tgtgaaaaat aatccaaagg ccggttggaa aaatgttata ccaaggaaaa tgataggagt      3960
     agttttgcgc ttctatcatg agcaatccgg tcactatggg ctacaaaaac ggtccaagca      4020
     atgaataagg tagtgtactg gacaggcatg agagcagatg ctaaggctta cgtacgtggt      4080
     tgctttatat gccaacgcac aaaacccatg aactctcggc tacacggtac ccgacgtagc      4140
     ataattccag atgggccaaa taaactgttg tcggtggact tatttggtcc acttccacca      4200
     ggaccggccg gcgtacgtta tgtatttata atgattgatg tattcacaaa gtacgttact      4260
     ttagacgcag tgaaaaagcc aacagcctac gtactttggg gaaagctgga gagaagaatg      4320
     caagagcttg gaaaaccgtt ggcgatactt tgcgatcaag gtactcagtt caccgcaaaa      4380
     tattgggtaa ggatgttgaa aagtagcaac attcacttag tgtatacatc ggtgcggcac      4440
     cctcaagcca acccggtaga gcgaatcatg agagagttat ctagataatg ccgagcatat      4500
     tgccgagtca atcatcggtt gtgggcaaag aatctacacc agttcagttg ttggatcaat      4560
     tgtgcctatc atgaatccac tggctcaacc ccttatgaac tacaatttgg aaaatcggca      4620
     aaggatgctc tgcaaaatct gtttagtttc cctccttcga aacggtcacc cgtcaattac      4680
     gaccagatcc gaatcatcct gcagaagaaa gcggacaatc gaaatgagcg ggcgaagaag      4740
     caaacaaaac gatttgtcgc tggagatctg gtattactga aggcaaatcc aatgtcatcg      4800
     gaagcagacg caataatcaa aaagtttctg gatgtttacg agggaccata tgagataaag      4860
     gatgtggtgc atgacgatgt gtttatgcta caccacaagg aatctggaaa agcgaggggc      4920
     atgtttcaca tcaaccttct gaagccgttt gtacagtcgt ggcagccgca aacttaatta      4980
     aacactgcgt ttgctggagg ggggagc                                          5007
//
ID   Gypsy-74_AA-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   supercont1.281;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_AA_;
KW   Gypsy-74_AA-I; Gypsy-74_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.281; Positions  676301  676047.
XX
SQ   Sequence 255 BP; 93 A; 38 C; 60 G; 64 T; 0 other;
     tgtaacccta tggattgaac cctggtggga gcatgaacgg gaaaaggaga gagcgagatt        60
     gaatcggaga gtactgacgc catactcagt ggaggatggc gggtttttgc tacgctgcgt       120
     gaagaagttg cggaaaacta aataatatta aatctgtaga accttattgt gaatttctta       180
     accaaaacca aactgaatta taacaaaaag tgaattaaac caaatttgac tattaattaa       240
     agtgatagag catca                                                        255
//
ID   Gypsy-74_CQ-I repbase;    DNA;    INV; 4635 BP.
XX
AC   AAWU01042220;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_CQ_;
KW   Gypsy-74_CQ-LTR; Gypsy-74_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4635
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 527-527 (2011).
XX
DR   Genome; AAWU01042220; Positions   14762   19396.
XX
CC   Positions [3585-3935] - Integrase core
CC   'GTCAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..4619
FT                 /product="Gypsy-74_CQ-I_1p"
FT                 /translation="MDADQFQQFMAKQNELVTKLVAGLQQRAVPASNISSV
FT                 VPPPPALCLDGDMEENYEFFLTNWRNYSQAVGMDSWPANQASKKVSFLMSV
FT                 IGEAALKKYYNFDLTEDQKKDVAEALKAIKQKVVRSRNLFVDRLDFFAASQ
FT                 VSSESIDDFAARLKSLAKPCKFALLEDEFILFKIVTSNKWGHLRTKMLSMQ
FT                 DLTTGKAVDICRVEEIAEQRLRHLSLESPVVSDVKKINKKTKKKLQRCKFC
FT                 GDEHEFVKGACPAYGKKCKRCGGRNHFEKACKIDQPWKQKRRHRRVKEVKD
FT                 DESSSEERSESSSVDSDDEESEHEVQIAKIKSKSAVESSALAVLDFKLGRK
FT                 WKPVTCEIDTGADATLIGYNCLTELLETPNPTLQPTSIKLKSFGGNPIPVL
FT                 GQVMLPVKRKGKRFQLVLQVVDYDHRPLLSLKASQSLGFVKFCRSVKIRRP
FT                 EAATEEEKLLSVYKVKAEAIVEKHSDIFAGYGRFPGVVSLEVDESVQPSIQ
FT                 HPRRVPIALRPKLKQELDKLEEDGIIVKETRHTEWVSNIVLVRRGGQNESV
FT                 RICLDPVPLNKALKRPNLQFDTIDELLPELGNAKIFTTVDTKKGFWHVELD
FT                 TPSSKLTTFWTPFGRYRWVRMPFGISPAPELFQLKLQGAIQGLEGVTGLAD
FT                 DLLVYGTGADLEEALDNHNRALEQLLVRLKENNVKLNRSKLKLCQTSVKFF
FT                 GHVLTTKGLTADETKTAAIRNFPTPTNKKELLRFVGMVNYLSRYIRNLSAH
FT                 FVNLRKLIAEKESWRWTAAEDEEFQKVKNLVADIHTLRYYDVTKPLVIECD
FT                 ASGFGLGVAVFQQDGVIGYASRTLTATEKNYAQIEKELLAILFACLRFDQL
FT                 IVGNPKTIIKTDHKPLVNIFRKPLLSAPRRLQHMLLNLQRYKPEIMFVAGK
FT                 ENVVADAISRAPYDDDHAQAGDYQKLEIFKVMRDLEDVKLKHFLNISDDRL
FT                 TEIMAETAADPVLQLVIRLIGEGWPETIGGVPDSVRVFFSYRNELTTQDGL
FT                 VFRNDRILIPHKLRRKMIEKTHISHNGVEATLKLARANIFWPGMSAQIRDT
FT                 VKECAVCAKFAGSQSKPPMPSHPVPVHPFQLVSLDVFFAEYRGIKRKFLVT
FT                 VDHYSDLFEIDLLKDLTPQSAIAACKINFARHGVPQLLLTDNGTHFVGKEW
FT                 RQFAGEWDFSHTTSAPHHQQANGKSEAAVKIAKQLIKKCEESGTDFWYALL
FT                 HWRNVPNKIGSSPAARLFSRQTRCGVPTAAGNLLPRVVEGVPDAIKENRRK
FT                 IKYYYDRKCRNLPQLETGAPVYVQVHPQKSTVWSPGTVAAKQTDRSYLVDV
FT                 DGAFYRRDLVNLKSRKEPNTQPAVNHPVLQDNPLPSGPNPDVAVAEKPAEF
FT                 PWTDSPSTPITKSSKPNKRLSSLSSTPQPKEKASPTETVTLERSRPKREVK
FT                 LPTKLHDYCLE"
XX
SQ   Sequence 4635 BP; 1255 A; 1123 C; 1268 G; 989 T; 0 other;
     tggtgtcaga agaatcgtga ccatagaaac tgatttcgtc gtcatttata tcgcgaatat        60
     tgaattttgt gaaagttaaa aaaaaaaaaa actgaacaat cagtgaagtg ctacggaagt       120
     ttcagcgttt tccccaaaag agactattgt tatctctttc tcgcattgtt ggctgtgcga       180
     gtgcgatagt gtactgttta caccagtgta ttagtgcaaa cattgcacca gtgtgggaaa       240
     acgtttgaga acgatccgct gaagtgacaa gtaaaacgta aacaaaacga taagttaact       300
     gacagttgaa aagagactac aagtgaagaa aaatagtgga aaaaatggat gccgaccagt       360
     ttcaacagtt tatggcgaaa caaaatgagc tggtgacgaa gctggttgct ggcctacaac       420
     agcgtgctgt gccggcgtcg aacatcagtt ccgtggttcc gccaccaccg gctctctgtc       480
     ttgacggaga catggaggag aactacgagt ttttcctaac caactggaga aactactcac       540
     aagccgtggg catggacagt tggccggcga atcaggcctc aaaaaaggtc agttttctga       600
     tgtccgtcat cggagaagct gcgctcaaaa agtattacaa cttcgacctg acagaggatc       660
     aaaagaaaga cgtcgccgag gccctgaagg ctatcaagca gaaggtcgtg cgcagccgta       720
     acttgttcgt ggaccgattg gattttttcg cggcgagtca agtgtccagc gaatccatcg       780
     atgactttgc agcccggctg aaaagtttgg cgaaaccgtg caaatttgca ctcttggagg       840
     acgagtttat cttgttcaaa atagtgacca gcaacaagtg gggccacctg cggaccaaaa       900
     tgttgagcat gcaggatctc acaacgggaa aagcagtgga tatctgccgc gtggaagaga       960
     ttgcagagca acgtttgcgg cacctctcct tggagtcgcc ggtggtcagt gatgtgaaga      1020
     agattaacaa gaagaccaag aagaagctgc agcggtgtaa gttctgtgga gatgagcacg      1080
     agtttgtgaa gggagcgtgt ccagcatacg gcaagaaatg caagcgttgc ggcggccgca      1140
     accactttga gaaggcgtgt aaaatcgatc aaccctggaa gcagaagcga cgccaccgtc      1200
     gtgtcaagga ggtgaaggac gacgagagca gttccgagga acgctctgaa tccagcagtg      1260
     tggacagcga cgacgaagaa agtgagcacg aagtgcagat tgccaaaatc aagtccaagt      1320
     cagctgtgga gagtagtgct ttggcggttc tggatttcaa gctaggccgg aagtggaaac      1380
     cagttacgtg cgagatcgac acgggtgcgg atgccacatt gatcgggtat aactgtttga      1440
     ctgagcttct tgaaactccg aacccgacac tgcaaccaac aagcatcaag ctgaagtctt      1500
     tcggtggcaa cccgatacca gtgttgggac aggttatgct acctgtaaaa cgaaaaggca      1560
     agcggttcca gctcgtcctg caagtcgttg actatgacca ccgcccgctc ttgtcgctta      1620
     aggcttcaca gtcgctgggc tttgtgaagt tctgccgatc ggtgaagata cgccgaccag      1680
     aagcagccac agaagaggag aagctgctca gtgtctacaa ggtgaaagcc gaagcaatcg      1740
     tcgagaaaca cagtgacatc ttcgctggct acggccggtt tcccggagtg gtttccctgg      1800
     aagtggacga aagtgtgcag ccatctattc agcatcctcg tcgggtccca atcgctttgc      1860
     gcccgaaact gaagcaggag ttggacaaac tggaagagga cggcattata gtgaaggaaa      1920
     cgcgacacac cgagtgggtt agcaacattg tgttagtccg ccgtggcggc cagaacgagt      1980
     ccgttcggat ttgtctcgat cctgtcccgc tcaacaaagc gctgaagcgg cccaatttgc      2040
     agtttgacac gattgacgag ttgcttcccg agttgggcaa cgccaagatt ttcacaactg      2100
     tggacacgaa aaaaggattt tggcacgtgg aactggacac ccccagcagc aagctgacca      2160
     ccttctggac accattcggt cgataccgct gggtcaggat gccgtttggt atttctccag      2220
     cacctgaact gttccagctg aagctgcaag gtgcgataca aggactggaa ggagtgaccg      2280
     ggttagcgga tgacttgctg gtgtacggca ccggagcgga tctggaggaa gctttggaca      2340
     accacaatcg ggctctagaa caactgttgg tgcggctcaa agagaacaac gtgaaactca      2400
     accggtccaa gctcaagttg tgtcagacat cggtgaagtt ctttggacac gtgctgacaa      2460
     cgaagggact aacagcagac gaaaccaaga cagccgcaat ccgcaacttt cccacaccaa      2520
     ccaacaagaa ggagctcctg cgatttgtcg gcatggtcaa ctatttgagc cggtacatcc      2580
     ggaacctaag cgctcatttt gtcaacctgc ggaaactgat cgccgaaaag gaaagctggc      2640
     gctggactgc tgctgaggac gaggagttcc agaaagtgaa aaatctcgta gccgacatcc      2700
     acacgctgcg ctactacgac gtgaccaagc ccctggtaat cgagtgtgac gcgagtggtt      2760
     tcggtctggg cgttgcagtg tttcaacaag acggtgtgat cggttacgcg tccagaaccc      2820
     tcactgcgac ggagaagaac tatgcccaga tagagaagga gctgttggcg atcttgtttg      2880
     cttgcctcag attcgatcaa ctaattgttg gcaacccgaa gaccattatc aaaaccgacc      2940
     acaaaccgct ggtgaacatc ttccggaagc cgttgttgtc ggccccacga cgcttgcaac      3000
     atatgctgtt gaacctgcaa cgatacaagc cggagattat gttcgtggcc ggcaaagaaa      3060
     acgtcgtcgc tgatgccatt tcgcgagccc cttacgacga cgatcacgct caagctggag      3120
     attaccagaa gctggagata ttcaaggtga tgcgcgacct ggaagacgtt aagctgaagc      3180
     acttcttgaa catctcagat gatcgtctga cggagatcat ggcggagacg gcggcggatc      3240
     cagtgttgca gctggtgatc cggttgattg gtgaaggttg gccagagacc atcggtggtg      3300
     taccggacag cgtccgcgtt ttcttcagct acagaaacga acttaccacc caggatggat      3360
     tagtgttccg taacgacaga atactgattc cccacaagct gcggcgcaaa atgatcgaga      3420
     agactcacat cagccacaat ggtgttgagg cgaccttgaa gctggcacgt gcgaatattt      3480
     tttggcctgg gatgagcgca caaattcgag acacagtcaa ggagtgtgcc gtctgcgcca      3540
     aattcgccgg ttcgcagtcc aagcccccga tgccgagtca cccggttcca gttcacccgt      3600
     ttcaactggt gtcgcttgat gtgttcttcg ctgagtaccg aggtattaag cggaagtttt      3660
     tggtgacggt tgatcactat tccgatctgt tcgagattga tctgctgaag gatctcactc      3720
     cacaatccgc catcgcggct tgcaagatca acttcgcgcg gcatggcgtt ccccagctct      3780
     tgctgacaga taacggaacg cacttcgtgg gaaaagagtg gcgacaattt gcgggagaat      3840
     gggacttcag tcacaccact tcagcgccac accatcaaca agcgaatggc aaatcggagg      3900
     cagcggttaa aatcgctaaa cagttgatca agaagtgtga agaatccggc acggattttt      3960
     ggtacgctct cctgcattgg cgtaacgtac caaacaagat cggatcgagt cctgcagctc      4020
     gcttattctc tcgtcaaaca cgatgtggtg tcccaactgc tgctggcaac ttacttccgc      4080
     gagtggtcga gggagttccg gatgctatca aggaaaacag gaggaagata aagtattatt      4140
     acgatagaaa gtgtcgtaat ctgccgcagc tggaaaccgg tgcaccagtg tacgtccaag      4200
     tccatccaca gaagtctacg gtgtggtcac ccggaacagt cgccgccaag caaactgacc      4260
     gatcgtatct cgtggatgtg gacggggcat tctatcgacg ggatttggtt aacctaaagt      4320
     cacgcaaaga accgaacacg cagcctgccg tcaaccatcc cgttctacag gacaatccgt      4380
     tgccgtctgg tccgaatcca gatgtagcag tggccgagaa accagcggag tttccgtgga      4440
     ccgattcacc gagcaccccg atcaccaaat cttcgaagcc gaacaaacga ttgtcttcgc      4500
     tgtcatcgac accgcagccg aaggaaaaag catcgcctac cgagacggtt acactggaga      4560
     gatcgcgccc caaacgagaa gtgaagctgc cgactaaatt acacgattat tgtctggaat      4620
     aaaaagtggg gagga                                                       4635
//
ID   Gypsy-74_CQ-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   AAWU01042220;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_CQ_;
KW   Gypsy-74_CQ-I; Gypsy-74_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-179
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 528-528 (2011).
XX
DR   Genome; AAWU01042220; Positions   14583   14761.
XX
SQ   Sequence 179 BP; 57 A; 29 C; 46 G; 47 T; 0 other;
     tgttatggta cggagtcgcg gtcttggcca cgacaaggag tttgggtatg acccacaaga        60
     ggagagttaa gtagagacag ccatcttgct agagcagacg ttgtgaatta gagctcaata       120
     aaattggagt tgttcagcat tgaaatcgag tatttctatt taaaataccg aacataaca        179
//
ID   Gypsy-74_DEl-I repbase;    DNA;    INV; 4554 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_DEl-I;
KW   Gypsy-74_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4554
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7036-7036 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 4554 BP; 1596 A; 785 C; 949 G; 1221 T; 3 other;
     acaacgatca taattcgaca tcagaagtgg gatctggcca ccagccttca acactagatg        60
     gaccatggcg taccctgatg gaattgcaaa ataaaaactt aattgaacta gtgagagcca       120
     taaaaacaac tgtacctgat gcagggcaga acaaaactgt gcaactaccc aaattcaacc       180
     cagacaaacc aggcgccaac gcatcatcgt ggtgcacaac tgttgaaata attttacaag       240
     aaaacacatt gagaagcagt gcgttggtta tggctttgag ttcagcttta gaaggaagtg       300
     cttcgcaatg gctttcgcaa gtgtgctatg ctgaaattac ttggcccgag tttaaagaat       360
     tgtttataca acgcttcgac actatagaaa caccagccgc tatgtttctt aatatgctat       420
     caaatcgacc gactgatggc gagagtctgg ccgttcatgc aagtcgcatg gttaccgaac       480
     taacgacgaa atggcgccaa atggataacg aagagattgc tgtgtctgtg acccgtgcgc       540
     tgctggcaag cttcgatcac cgattgcagc gtttaagttt cacatcaaat gttcgaacca       600
     gaggcgatct acagtccgaa ttaaaagcgt tcacttttat taaaaggaaa agcggcgcta       660
     tggagcatca gtctgaaact tattctaaac ggcaaaaaca atcaccgata gagtgccatt       720
     tctgcggaaa agtgggccat aaaatgtttg aatgcagatt caggaaacaa cagaatcaat       780
     tcgcgactga taaaacccaa catggcaggc atgatgttca tcaccgtgga aaatcaaatg       840
     taacttgcta caagtgcgga gaattgggtc acatatctac ccaatgtaca aagaaggaag       900
     ctgatatgaa caaggcattc aaccgggaaa agcgagtgga acagtgcagc gttgcagtac       960
     caaagggatg cctgaaccat agaggccaaa tttttgaaat caccttcgat tcgggatcgg      1020
     aatgctcgtt gataaaagaa aagctaagta tcaaattttc tggtaaaaga ttcaataata      1080
     ttgttatgtt aaaaggtatc ggcagcaatg gaatatgtag tactgtacaa atattaagca      1140
     atgtaaaaat tgacgattat tgtattgaaa ttttgtttca tgtaataggc gatgatgata      1200
     tgcaaaacga cattgtaatt ggccgtgaga tattaaatca gggtcttgat attgtcattt      1260
     catcaaacca atttaaaatc tcaaagacca aagtagttaa tttatgtacc ggcaatgagc      1320
     cagccgatat taatactgag cttgagggac aagataaaat aaaactacat tcactgttgg      1380
     caaagtactc aaattcgttt ataactggta ttccaagtac taaagtcaga attggcgaaa      1440
     tgaaaattag attgattgat ccaacaaaaa ccgtacaaag aaggccatat cgtttaagtc      1500
     catgcgagcg agatttggtt agggacaaaa ttaatgaact gctaaaatgc aatataatta      1560
     ggccaagctg ctcgccttat gcaagcccta tattattagt gaagaaaaaa attgtacgga      1620
     cagactttgt gttgacttta gagagctgaa ttcaaatacg gtcgctgata aatacccttt      1680
     accacttata caagatcaaa tcaataggct tggaggagtt aattacttta catgtctaga      1740
     catggccagc ggatattacc aaattccttt acattcagat tctatcgagt acacggcgtt      1800
     tgtgactccg gatggtcaat atgagttcct atctatgcca tttgggctca aaaacgcacc      1860
     ttctgttttt caacgattag taatacaggc gcttgggaat ctagcaaatt cctttgtcat      1920
     cgtctatatg gatgatatca tgatagccgc ctcaacaaaa tgcgaggcgc tagaaagatt      1980
     acagatcgtt ctagatgttt tgacaaaggc tgggttttca ttcaatctta caaagtgctc      2040
     attcctgaaa acatcggttc aatatttggg ttacaatata agtgcgggtg aaattcgtcc      2100
     aaacccacag aaagttgtag cgttgactgc tcttccgcct ccacagtcag tcacttcact      2160
     tagacaattc attgggctag catcctattt ccgacagttt attaagggat tttcacaatt      2220
     aatgaaaccg ttatatttct taactgcaga gaaaaacaaa tttatttgga aaacagagca      2280
     tgaacagata cggaaaaagg tcattgccac tcttaccgac aaaccagtcc ttgttatttt      2340
     tgatcctaat tatccaatcg aattgcacac agacgccagt tgctgtggct acggtgcaat      2400
     tttattacat aaaattaata acaaacccca ggtaatagaa tactatagca aaactacttc      2460
     atcggcagaa tcaagatatc actcgtacga gttggaaacc ttagctgtcg tgaacgccat      2520
     taagcatttt cgacattatt tgctgggcag gaactttgta gtttatactg actgcaactc      2580
     gcttaaggcg tcgagaaata aacaagattt aacccccaga gcacagcgtt ggtgggctta      2640
     tttgcagtca ttcacattcg atattcagta tagagaaggg aaaagaatgg cacacgttga      2700
     ctttttatcg agaaatcccc tttcacaaaa gtctactaca accgcaaaaa tagtcgagag      2760
     aaaagagtaa atttagctga aatttcaagc aactggctta ttgctgaaca acgtcgagat      2820
     ttggacataa tcgaaattgt taaacatttt aaaaactttt ctctgcctga agatattgcg      2880
     aaaacctatg aattaagggc agaagttctt catcgaaaaa tacaaaggaa tgggagaaca      2940
     cgttgtttac cagtggtgcc acgagctttc agatggtctg tcataaatca agttcatgag      3000
     tccattatgc atttaggttt cgaaaagaca ttggataaaa cttacgattt ctactggttt      3060
     gacaatatgt caaaatacgt aaaaaaattt gtcgacaact gcatcacttg caaaatgtca      3120
     aaatccactt caggaaaaat acaggctgag ttgcattcaa taccaaaagt cactattcct      3180
     tggcacacta tccacatcga tatcacagga aaattaagtg gcaagagtga ccagaaggag      3240
     tatgttattg ttcagataga cgcgtttacc aaatatgtct atcttagtca tagtcttaaa      3300
     ttagacastg agagttgtat aagggccgtt caatctgccg tttcattgtt tggagtacca      3360
     aaccgaataa tagctgacca gggaaggtgt tttacaggcg caaagttcag tcaattttgt      3420
     tcagatcaaa aaataaactt gcatttgata gccactggtg caagtcgagc taatggtcaa      3480
     gtggagcgaa ccatgagcac gttgaagaat atgttaacgg cggttgaaac tggaacacag      3540
     tcttggcagg atgtgttggg agaggtgcag ttggcaatca attgtacaac caaccgcact      3600
     acgaaagsaa gtcctttaga aatgttattg ggaaaggtag cacggccatt aggattactt      3660
     ccacctagtg atatagaaaa tgttattgat ctgccaaacg taagagcgca agctgcaaag      3720
     aatgtattag ccagtgcagc ttatgataaa gaacgatttg atagaaataa ggcaaaagta      3780
     acaaagcaca aagttggaga ttttgtgtta cttaaaagcg aagaaagaca ccagaccaag      3840
     ctaagtccaa aatttaaggg gccttttgaa gtagtaaaag ttctagaagg tgacaggtac      3900
     attttaaagt ctttaactaa taaaagaaat tataaatatg cacatgagga tttaagaaaa      3960
     ttaccagagg ggcaagtgcc cgaagagcta aatgtgtacg atgattataa taatttagat      4020
     gaaagtaacg taaccgctac agaagagagt gaaaatgaaa atattgagag tattgaagaa      4080
     gagagtgaaa atgcaaatat tgakagtatt gaagaagaaa gtgaagtaca ccaagaaggg      4140
     tgacaaagtt gtactgctgg ccaacgaaaa tggcagagac tgagtccata aaatataatg      4200
     caagcacaag tgcaaaacat attgtttgtt ttgatcatgg cgtgtggggt attttgatta      4260
     tgcgactata agagtgaata atgaagaaga atggataata taaaagaaga agaaaaacaa      4320
     agaaacgaaa agaaagaaag aaaaattgaa ctgaattgat aaaaaaaaat tatggttatg      4380
     gaactcaata ctgttttgtg aaactgttaa tatgataatt tgttatgaat taagataaga      4440
     aaattggatt ttgttatgaa actatttaat gttcagttta ataattaaaa gaaagaaaga      4500
     aaattctaat gttgttattt tctacacgag gtcgtgttag ggtcaggatg gccg            4554
//
ID   Gypsy-74_DEl-LTR repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-74_DEl-I;
KW   Gypsy-74_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-342
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7067-7067 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 342 BP; 81 A; 67 C; 102 G; 92 T; 0 other;
     tgtcggcgca ttgaaactgc gtggttgtga atatatgtgt gtgtgtgtgt gtgcgaatac        60
     acattttcgg gtatttcacc agaataataa tattgcatca gcctcttgtg ctgtgagtgt       120
     gtggttgcca ggcaaccgtt gtcaggcaac cgttgcctgc atgttgtcgc tttaagaagt       180
     accgttatag cgaggcgaca gcgttgtgtc gctgtcgccg agcgtgattc ggcatacgtg       240
     gtagacacag taggtagaga attagacgca ggcagttgcg taccagaact tggagtgtgt       300
     gcaaggccga aacacgttgc gctagtacaa tgacagacaa ca                          342
//
ID   Gypsy-74_LMi-LTR repbase;    DNA;    INV; 1995 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   23-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-74_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1995
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (23-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 1995 BP; 729 A; 346 C; 338 G; 582 T; 0 other;
     tgtgacacaa ccgcgactaa tcgaacagtc atgggccact aagtgtggca cccgtgctag        60
     cctaaggaca agacttggac cgaaactccc caaagattta tccaaacacg aaataaattg       120
     cggaaggcga taactatgtt tgaaataggt gtagcttata gcagtaaaag aagtctgatt       180
     actatgaaac aaaaaattaa cttaggtaat cttgcaatac tattgttgtg ctaattaaaa       240
     attattaaca aaatgtttca ttaataaaaa tttatacacg gtcgccagcc taatgaggca       300
     taagaatacc aagcagtgat aaattaagaa tgcagttaaa tttagaagct tggtgcagaa       360
     taagtaaagg gtggaagaaa ctttgtcacc agtttcataa gagaaaaaaa taccaatcac       420
     aaaaataata aagatttaaa tgaaagcagt aattatttaa attattgtaa cggtaagact       480
     cacctcatca gttactttct gttactatag aatatagcgt ggaatgcagt attgcagtgc       540
     aagtggcact cagaaacaaa gttactgaaa ggcttataat tagtggtaaa aaaataataa       600
     aaatctactg atgttatggt cagtgctgtt cctaatgttc tttgtaaata agtgagaaat       660
     tggttatgat tatgacctct attcaaaaat ctactaaaag aacactgact agtatgtatc       720
     actttgttga aaataatgaa atctttctcc ctaccatgaa actaatgatt ctgttacagt       780
     taactattat ttaagtaaca ctttgctgaa tagattcatc aattaaatct gctagcctgg       840
     aatctagaat gaggtcactc aaactgtact gacaatttat aggaacacta taaattttga       900
     ttgataccac aatagaagtt cgtgtctgaa ctatttcaat tatatgaact gatttaaatt       960
     agttatgtgg caaaacagta acttattcct accaatacta ttgtgcaaga gcaatgaaat      1020
     ttatagttgc agcactgtat attgtactaa gaagattctc caaaaaattt acattataaa      1080
     aattgattgc tgcttttaga aaaaatagga tgactcggtt aataattctt tacaggagag      1140
     gatccctatt aggttatgtg acttgggata aattagggtt acgtacacac tacttttaac      1200
     agaaatgtaa cctctattga aaaaacattc aaaacacaag ctaaatctct caacgaccag      1260
     tttataaaca gtaacaataa atattgtgac ctgatattaa tgcggagtag tggcgaggtg      1320
     gcggcgcagc gtatacagct cagatttcat ctttatgcag tttgtgagcc gacattgtaa      1380
     cagcggtttc cagtagcttc catttagctc catatgcaga cagtataagt gttaccattg      1440
     catctgcacg ttcaccgagg ccattgtacg tagattggtc ttctgcctca agtgaaacaa      1500
     atatttgggc agaatacagt agcacaagtc tgccactacg tcttgctgct gtgccctcag      1560
     gttcactact gctgtgagct cccaccacag actgactgct gtgaatgcca accttcgact      1620
     gactactctg tctccgttag ctgcgcgcca acaccacctt ttcatttaca acggaattcc      1680
     gttcacattg gaatcactac atcttttaca tatcatgctg gtcgtgagat attacaaatt      1740
     tacataatat tcacatacat aaaacgatac aaaaataaaa ttgacattac cgaaacaatt      1800
     aaaattacaa aaatattatg caaaaataaa catgatatag atattcataa aacatacaaa      1860
     gcacatgaag tacagacatc acataccata caatagtgga atcgattgta acatgaatga      1920
     aatttagtat ctaacatagc aaaaaaatga aatattatta ccaaaaaatg gtcaaaattg      1980
     ggcaatggcg ttata                                                       1995
//
ID   Gypsy-75_AA-I repbase;    DNA;    INV; 3938 BP.
XX
AC   supercont1.331;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_AA_;
KW   Gypsy-75_AA-LTR; Gypsy-75_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3938
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.331; Positions  588425  584488.
XX
CC   Positions [1343-1843] - Reverse transcriptase
CC   Positions [2987-3475] - Integrase core
CC   'AGAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..3934
FT                 /product="Gypsy-75_AA-I_1p"
FT                 /translation="MNVKPPEFNVGDSWPLYQERLERFFVAYELNDEADDE
FT                 RRAAFLLTSVSMEVYQIIKNLCFPDKPETKNFAQLCELMRQRFTPTVVVFR
FT                 ERSRFFEARQGDSETVVEWATRLKKLAADCDFGANLSDFIKNMFVVGLRRG
FT                 PIFERVCEEEPSVAYEDLVKLAMKKESTLQQRGMLEVHRIQGDNRKKNETV
FT                 KCFACGKGDHDFRKCQYKSYVCKICDKKGHLAKVCPSREKDAAANRSSGGK
FT                 KRSPKVNHLRLNKVDFLPPVLLKICVNERQIDFEMDTGSPVNAISTGLFHK
FT                 LFSNVKLNTDVQEEFVCYNGSSFRAVGKFYARMRYKAHDSKEEIFVFDGDR
FT                 HPLLGRQTMSSWGLKIDFCALTVAEDHIKKLETILCKHEAVFTGELGCLKD
FT                 MKVHLPLKDEAVPRFCKPRKVPLALKEKVEAELDRLERTGIITKASTADVE
FT                 WGTPLVPVLKKDSSIRLCADYRVTVNPFLKDDHHPLPIIDEIFAALQGGKH
FT                 FSKLDLKNAYYQLEVDEETKKLLSWSTHRGVFHMNRLPFGTKTACSVFQAT
FT                 MERVLQGCRGTVSYLDDVMVTGSTTEEHLQNLDHVLQRFEDAGFLLNKEKC
FT                 EFFKEEVDFLGHYIDKEGLHKDPHKVKAILNVKPPTDAKEVRSFVGLVNYY
FT                 AKFCPHLAHSLKPLYELLKEGVSFSWTKKQQQAFEEAKNLIAGETVLVHYN
FT                 RDLPIKLYCDASNAGIGAVITHVFPDKNERPISFASRVFKKHEGNYSTIDR
FT                 EALAIYYGVTKFYSYLAGRLFILMTDHKPLIGLFSTKGVPETAARRLQRWA
FT                 VFLSSFDYEIQHVKGVDNIPADFLSRFPLASVEDEDKFNDDFAEEDPTIFL
FT                 NFLEQETRSLVERRQLKVESRRDKTVSRVVEYLKSGWPSNILEEEIKKFYS
FT                 KRDELSVEEGVLLWGYRIVIPTKLRKNILMELHSVHLGIVKMKSLARSYFW
FT                 WPSMDKEIEELGRKCELCIQLRPERTDPISPWRLTSSPGDRVHIDHFQFRG
FT                 ADFLVMVDSYSKWIEVFPVRTLTSKETIEKVCEYKSRFGHISTLVSDNGTA
FT                 FSSDEFKNFCMNRGTKHLRTAPYSPCSNGAAENAVKTVKSALTKLSSDPAF
FT                 QKKTVAHRLFSFLEMYRATKHATTNESPFKLMFGREMHIRFDVLKTDNTRR
FT                 QQEASFNQDRTRSVTFEVGEVVYARDYRDPKKPAWVRATVVKKLGTVLYEC
FT                 EAASIGLIKRRSHQLLKYPYDDFDDEHSGATTNARERENAESSDESVYGDD
FT                 FVEVEEPPRVGQRQPDGTYVTRSNRVVRPPRYLEGQ"
XX
SQ   Sequence 3938 BP; 1090 A; 821 C; 1065 G; 962 T; 0 other;
     gtttggcgac gaaaggaaaa aatcaaattt tcaagattcc gtcatgaatg tgaagcctcc        60
     ggagttcaac gttggcgatt cctggccact ttaccaggaa cgcctggaaa gattcttcgt       120
     ggcctacgaa ctcaacgatg aagcggacga tgagaggcga gctgcgttcc tgctcacatc       180
     cgtgtcaatg gaggtatacc agattatcaa gaatctgtgt tttccggaca agccagaaac       240
     caagaatttt gcccagctct gcgaattgat gcgccagcgg tttaccccta cggtggtggt       300
     ttttcgagag cgttccagat ttttcgaagc acgtcaaggc gacagtgaga cggtggtcga       360
     atgggctacc cgtttgaaaa agttggcagc cgactgcgat tttggtgcca atttgagcga       420
     cttcatcaag aatatgttcg tcgtaggatt gcgtcgtggc ccaatttttg aaagagtttg       480
     tgaagaggaa ccttcggtgg cctacgaaga tttggtgaaa ctggctatga agaaagagtc       540
     aactctacag cagcgtggta tgctagaagt gcaccggatc caaggagata acaggaagaa       600
     gaatgaaacc gtgaagtgtt ttgcttgcgg aaagggagac catgattttc ggaagtgcca       660
     gtataagagc tacgtttgca agatctgcga taaaaaggga catttggcca aggtttgtcc       720
     atcaagagag aaggatgcgg cggcgaatcg gagttccggt gggaaaaaaa gaagcccgaa       780
     agtgaaccat ctgcgtttga acaaggtgga cttccttccg cccgtgctgc tgaaaatttg       840
     cgtcaacgag agacagattg acttcgagat ggacacagga agtccagtga acgccatttc       900
     tacgggactc ttccataagc tattttccaa cgtgaagcta aatacggatg tccaagaaga       960
     gtttgtgtgc tacaacggca gtagtttccg ggcggtcgga aagttctacg ctcgtatgag      1020
     gtacaaggcc cacgattcca aggaggaaat tttcgttttc gacggtgacc ggcacccatt      1080
     gctgggacga cagaccatgt ccagctgggg tctgaagatt gatttttgcg cattgacggt      1140
     tgctgaggac cacatcaaga agctagagac gattttgtgc aagcatgaag ctgttttcac      1200
     gggagagcta ggctgtttga aggatatgaa ggtccatttg ccactgaagg acgaagcagt      1260
     accaagattt tgtaaaccaa ggaaggtgcc attagctttg aaggaaaagg tggaagccga      1320
     gttggatcgt ttggagcgta caggtatcat taccaaagca tccacggcgg atgtggaatg      1380
     gggaacacca ctagtacccg ttctgaagaa ggattcatcg attcgtcttt gcgctgacta      1440
     tcgtgttaca gtcaatccgt ttctgaagga cgaccatcat ccgttaccta tcatcgatga      1500
     gatttttgcg gctttgcaag gaggtaagca cttttccaag ctggacctca agaatgctta      1560
     ttaccagctc gaggtcgatg aggaaaccaa gaagcttttg tcgtggagca cccatcgagg      1620
     cgtgttccat atgaatcgtt tgccgtttgg aacgaagacc gcttgttccg tgtttcaagc      1680
     tacaatggag agagtgttgc aaggctgccg tggaactgtc agttacctag acgatgttat      1740
     ggtcaccggg tccactaccg aggaacatct acagaacctg gatcatgttt tgcaacggtt      1800
     cgaagacgct ggatttctgt tgaataaaga aaaatgtgaa tttttcaagg aagaagtgga      1860
     tttccttggc cattacatcg acaaggaagg gttgcataag gacccacata aggtgaaggc      1920
     catattgaac gtgaagccac caacagacgc taaggaggtc cgttcctttg tgggactcgt      1980
     gaattactac gccaagtttt gtccccattt ggcacacagt ctgaagcccc tgtacgagct      2040
     gctgaaggaa ggtgttagtt tctcctggac taagaagcaa cagcaagcgt tcgaggaagc      2100
     taagaatctc attgctggag aaacggtgct ggttcactat aatcgagatc ttccgatcaa      2160
     gctgtactgc gatgcatcga acgcaggaat cggagctgtc attactcacg tttttccgga      2220
     taaaaatgag cgtccgatat cgtttgcttc aagagttttc aagaaacacg aaggcaatta      2280
     ttcaacaata gaccgggaag ctttggccat ttactacgga gtcacgaagt tttacagtta      2340
     tttggccggt cgacttttca ttttgatgac cgatcacaag ccgctgattg gattgttcag      2400
     cacaaagggt gttcctgaaa cagcagcgag acgacttcaa cgatgggccg tgtttttgtc      2460
     aagcttcgac tatgaaatcc agcacgtgaa aggtgtggac aatatcccgg cagattttct      2520
     ttcccgtttt ccgttggcca gtgtcgaaga tgaagataag tttaacgacg attttgcaga      2580
     agaagacccg acaatatttc tgaacttttt ggaacaagaa actcgttcgt tagtcgaaag      2640
     gaggcagttg aaggtcgaga gtcgtcgtga caagactgta agccgtgtgg tggagtattt      2700
     gaagtctggt tggccatcga acatcctgga agaagagatc aagaagtttt attccaagcg      2760
     agatgaactc agcgttgagg aaggtgtcct gctttggggt tatcgcatcg taattccaac      2820
     caaattgcgg aagaacatcc tgatggagtt acactcggtt cacttgggca tagtcaagat      2880
     gaagagcctt gcgcggtcat atttctggtg gccgtcaatg gacaaggaga ttgaagagct      2940
     tggacgaaaa tgcgaattgt gtattcagtt acgaccagag cggacggatc caatatcacc      3000
     gtggagactt acaagttccc ctggggatcg agttcatatt gaccatttcc agttcagagg      3060
     tgccgatttt ctggttatgg tggacagcta cagcaagtgg atagaggtgt tcccagtgcg      3120
     cacgctgaca tcgaaggaga cgattgagaa ggtctgtgaa tataaatcac gttttggaca      3180
     catttccact ttagtctcag acaacggtac ggcgttttcc tcggacgaat tcaagaattt      3240
     ctgtatgaat cgaggaacca aacatctgcg gacggcacca tatagcccgt gctccaacgg      3300
     ggcggctgag aatgcagtga agacggttaa gtcggccttg acgaagcttt cttctgaccc      3360
     agcatttcag aaaaagacag tcgctcaccg tttattttcc tttttggaaa tgtaccgtgc      3420
     aacgaaacat gctactacga acgaaagccc tttcaagctc atgttcggga gggaaatgca      3480
     cataaggttc gatgtactga agacggataa taccaggcgg caacaggaag cgagttttaa      3540
     tcaagatcgt acaagatccg tgacttttga agttggtgaa gtggtgtacg caagagatta      3600
     ccgtgatccg aagaaaccag cctgggtgcg agcaacagtc gtgaagaaac tgggtactgt      3660
     cctgtacgag tgcgaagcag cgtcaatagg tttgatcaag agaagaagcc accagctgct      3720
     gaagtatccc tacgacgatt tcgacgacga acacagtggg gctacaacca atgcgaggga      3780
     acgtgaaaat gctgaatcca gcgacgagtc ggtgtacgga gatgatttcg tcgaagtaga      3840
     agaaccacct cgagtcggtc aacgacaacc agacggaaca tacgtgacta gatcaaatcg      3900
     agtagtgcgc cctccgcgct acttagaggg gcagtagt                              3938
//
ID   Gypsy-75_AA-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   supercont1.331;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_AA_;
KW   Gypsy-75_AA-I; Gypsy-75_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.331; Positions  584487  584304.
XX
SQ   Sequence 184 BP; 66 A; 35 C; 34 G; 49 T; 0 other;
     tgtagtgtat tggcatcact gcaaacgtga ataccgtggt tactccctga ctacggttgc        60
     taccgatcaa aacaccgatc atagtaagtg ctgttaaaag atagcgatca gaaaattagt       120
     tattaagtga acgtcaaata aaccagaagc aaaactaaat ttgtctatta ttcaagacgt       180
     caca                                                                    184
//
ID   Gypsy-75_CQ-I repbase;    DNA;    INV; 1942 BP.
XX
AC   AAWU01021168;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_CQ_;
KW   Gypsy-75_CQ-LTR; Gypsy-75_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1942
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 529-529 (2011).
XX
DR   GenBank; AAWU01021168; Positions   11887   13828.
XX
CC   'GTATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           225..1928
FT                 /product="Gypsy-75_CQ-I_1p"
FT                 /translation="MDAKQFAKFMASMEKLLGSFKSMAGQAAAGTSTAGGS
FT                 AIGGSVTIPFIPLPPPLELEGDMERNYNFFENGWKNYTSAVGMDAWPVERN
FT                 KQKTSVLLSVIGQAALKKYFNFELTEVQQGDPALALSAIKAKVVRERNPII
FT                 DWTEFFSMEQWEEESVDDFVGRLKALAKLCKFGVLEAEMVKFKIVTSNKWS
FT                 HLRATLLTAQNLTEAIVVDLCRAEEVSERHRKAVSSSSFGVNKVRRMARKC
FT                 KFCGGRHEFVKGVCPALGKKCNRCGGKNHFEKACKNDQKKRSKKKVKDVYG
FT                 RSGDSAQTSEESDSEPESSDAANIGQIYDKSSYGGHVQADLDLFVGETWQS
FT                 VQCELDTGANASLVGRDWLIRVGGQNSPQLLPSRCRLQSFGGGHIPVLGEV
FT                 KIPCHRNGRKYNLSLQVVDVEHGPLLSAQVCKKLGFVKFCNSVSASAPHYP
FT                 NDLIAIHRIKAQDSQLIDSGKEYRQKDVPSRMQQKPVHVCKQPRKEPQTSK
FT                 QNLDQSTTQIGKAVVSVADQEAVRVWTNGVRSAEEPNTLKLPVPVEMPNRL
FT                 KRNSVVFPVFEHKVQENFIFV"
XX
SQ   Sequence 1942 BP; 511 A; 416 C; 579 G; 436 T; 0 other;
     tggtgtcaga agtagtcgtg gtttagtgac agttttccgg cgtcatttta catcgcggaa        60
     gttactgtgc ggaaaaaaac tttgttcgag tggcgaaaca atcattcgcg aaagttccgg       120
     aatagcgtta cgtgattcgt tcagcggacg tgttcggact tgttcggcgg ccatatttgt       180
     attcgtttcc acgttgaaaa agtgtctttc cggaagtgaa aaaaatggat gcaaaacaat       240
     ttgctaagtt tatggcgtcc atggagaaac ttctaggctc gtttaagagc atggccgggc       300
     aagctgcggc cggtacgagt acagctggtg gaagcgcgat tggtggaagt gttaccattc       360
     cgtttattcc tcttccgccc ccgttggagc tagagggcga catggaaagg aactacaatt       420
     tctttgagaa cggttggaag aattatacga gtgccgtcgg aatggatgcg tggccagttg       480
     agcggaacaa gcagaagaca agtgtgttgc tgtctgtgat tggccaagcg gcgctcaaga       540
     agtattttaa cttcgagctg accgaagtgc aacagggtga cccggcgctg gcgctgtctg       600
     cgatcaaagc gaaggtggtt cgagaacgaa atccgatcat cgattggact gagtttttct       660
     cgatggagca gtgggaggag gagagcgttg acgatttcgt gggacgattg aaggcattgg       720
     caaagctctg taagtttggc gtgctggagg cggaaatggt gaaattcaaa attgtcacat       780
     ccaacaaatg gtcccatttg cgtgcgacgc tgctcacggc ccagaacctt acagaggcga       840
     tagtagtgga cctgtgtcgc gctgaagaag tttcggaaag gcacagaaaa gcagtgagca       900
     gttcgagctt cggcgtcaac aaggtgaggc gaatggcgag aaagtgcaag ttctgcggcg       960
     gtcggcatga gtttgtcaag ggtgtctgtc cagctctggg gaagaagtgt aatcggtgcg      1020
     gcgggaagaa tcactttgag aaggcatgca agaacgatca gaagaagcgg tcaaagaaga      1080
     aggtgaagga tgtgtatgga cgcagcggtg attcggcaca aaccagcgag gaaagtgact      1140
     cagagccgga aagcagcgat gctgcgaaca tcgggcagat ctacgacaag tccagttatg      1200
     gtggccacgt gcaagcggat ctggatctct tcgtcggtga gacatggcag tctgttcaat      1260
     gtgagttgga caccggtgcg aacgccagtc tggttggccg agattggcta atcagagttg      1320
     gcggacaaaa cagcccacag ttgctgccat cgagatgccg cctacaaagc tttggtggtg      1380
     gccacattcc tgtcctggga gaggtgaaga tcccgtgcca tcgcaacgga cgtaagtaca      1440
     atctctcgtt acaagtggtt gacgtcgagc atggccctct cctgtctgcg caagtctgca      1500
     agaaattggg attcgtaaag ttctgcaatt cagtgtccgc atctgcaccg cactatccca      1560
     atgacctgat cgccatccac cgcataaaag ctcaagattc tcagctgatc gactccggca      1620
     aagaataccg ccagaaggat gtaccaagcc ggatgcaaca gaagccagtt cacgtctgca      1680
     agcagccacg taaggagccc caaacgtcca agcagaatct cgaccagtca acgacgcaga      1740
     ttggaaaagc tgttgtatcg gttgcagatc aagaagcggt cagggtatgg accaacggtg      1800
     tccgatcagc ggaagagcca aacacgctta agctgccagt tcccgtggag atgccgaaca      1860
     ggctgaagag aaattcagtg gtttttccag ttttcgaaca taaggttcag gagaatttta      1920
     tttttgttta aagcagggaa ga                                               1942
//
ID   Gypsy-75_CQ-LTR repbase;    DNA;    INV; 194 BP.
XX
AC   AAWU01021168;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_CQ_;
KW   Gypsy-75_CQ-I; Gypsy-75_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-194
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 530-530 (2011).
XX
DR   GenBank; AAWU01021168; Positions   11693   11886.
XX
SQ   Sequence 194 BP; 54 A; 41 C; 38 G; 61 T; 0 other;
     tgttatatta tgcgtcattt gtgtaagacc cccaaacgta gtttgtgaac atcccctgaa        60
     acgtcattca tgacagccat tcatcgggtc gctgattcag tgcttgagtg tgcaagagtg       120
     aagacgtaca ataaatcgct ctgttttatt tagtaaaccg gtctcttctt tggctaatca       180
     cacgtaataa aaca                                                         194
//
ID   Gypsy-75_DEl-I repbase;    DNA;    INV; 5851 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_DEl-I;
KW   Gypsy-75_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5851
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7037-7037 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 5851 BP; 2472 A; 945 C; 913 G; 1520 T; 1 other;
     ggcgcagtcg gtaggatttc aagtgaaaaa gttaaacgtc ggtttaaact agtcttaggg        60
     attatactac acaactagta tatcctgacc agtacgaata aatcagaaat cgtttaaaaa       120
     cacaagtgaa atccgcaaaa gactctacgt gcaaatcgtc gcgtaaacca gtgaaaaaaa       180
     tccaattcgg tcaatatcgc ttaaataaat aatttaaagt gaaatattga aactttaaca       240
     aaaccagaat ggcaaaccca atccaattat cggagatcca tttgaaccaa ctaattggtc       300
     aaattaaaga gttgccctac tttgatggca atcccgccga cctaggtggc tacattgggc       360
     gtgtcgaata cctactacag ctatatccaa ctcaggatgc ccgacaagtt cacataattt       420
     atggagccat cgagcggacc atcgtggaca ccgccaaagc cgtcatttcc gaagaaaaaa       480
     ctgtgaattg gttgtccaca aaagcagccc taatccgagc attcaaggat cacagacctt       540
     atgaagacct cgtagctatc atccatcaga cgacctacaa aggaagcatc agtaagttcg       600
     tagacgaact aaggaaaaaa tctgcaaata taattaataa gttagaatta gaaacagacc       660
     ccacagacaa aacaatttac actgcagctt tgaataaaac tattagaaat tgcatagaaa       720
     ggaaacttcc cgacagatta tataatgctt tatcaaaaag ggatatttcc accattaata       780
     atttgaaaga aacagcaatg gtgttaggac attgggatgc ggatcctttt gaaagctata       840
     gacctgtgcg tcatgataat cgtaggaatt ccggaaattc tcatcaaaat tactactatc       900
     aaaaacacaa ctccaatttc tacccaagac acagtaacaa ttataatcat ttcaattcaa       960
     attcaaattc aaatacaaat tcaaattcaa caaatgctca gtcttcgtca aaccaaaatc      1020
     gcattcaaca agaatttaga aattctttag cccaaggtag agcccaaaat tcattaaatt      1080
     accaagcttc aacatcaaac cattctccaa atgctccgat aaaaagacaa agagaaagtg      1140
     agagtacaca gaatagaatg gatgtaaatt ttcagcaaac agcctcggag ccagaaaata      1200
     ctacccttat gttagagtaa tcataaaggg taaaattctt aaagccatgg ttgacacggg      1260
     ttcatccatt aatataatga gggaaaattt tgggaacctc gaagtcaacg atgaaaattt      1320
     aaaagtttat actataaacg gatcgatgga attaagtaaa agcgttatga taaaaccaag      1380
     taaagtttgc ccagtagaac agaaattcta tttacataaa ttttcagaca attatgatgt      1440
     tctaatggga agggattatc ttaaaggttg taaagctaag attaattttg aagatggaac      1500
     agtaacttta ggtgaagata aattaacagt catgtatggt gacgatgata aaaaggataa      1560
     gaccgcaata aaatgcctta atcctatatc atcagaaaag aaagggaaag gataagaccg      1620
     caataaaatg ccttaatcct atatcatcag aaaagaaagg tgaaaaagat aagaccgccg      1680
     taaaacgcct taatctcaaa tcaccaaaga aggaaaagat tgaagaggat gagaccgcag      1740
     taaaatgcct caatccaccc tcatctgagg atcaatcttt tactttcgcc attgaaaacg      1800
     aacttcggga atgcaatgaa tttagattag agcatttaaa cgaagaggaa aaagaatgtt      1860
     tgaaaaaagt cttatttgaa tataatgaca ttcagtacaa agaaggtgaa aatctgacct      1920
     tcacaagtac gatcaaacat tctatccaaa ccaaacatga ggaccctatt tataagaaac      1980
     cttataagta ccctcaatca ttcgatgatg aagtcaataa acaaatgaac gaaatgatag      2040
     aacagggaat aattcgtaaa tcgaaatctc cttactgttc acccatctgg atggttccta      2100
     agaaagctga cgcttcaggg aaaccaaagt tcagagtagt aatagactac agaagtttaa      2160
     atgaaataac aattaatgac aaattcccaa tacccagaat ggatgaaata ttagataaat      2220
     tgggaagatg tcaatatttc actacaattg atttagctaa aggattccat caaattcaaa      2280
     tggaccctga atcaattgcc aaaacagcat tctccacaaa gaatggtcat tacgaatata      2340
     cacgtatgcc attcggactt aaaaacgcgc ccgccacctt ccaaagatgt atgaacaatt      2400
     tactagaaga cttaatttat agagattgtt tagtttactt agatgatata ataatttttt      2460
     ccacttcatt ggaagaacat attttatcat tgagaaaagt atttggaaga cttcgagatg      2520
     caaatttaaa attacaacta gataaatgcg aatttttgag aaaagaaaca gaatttctag      2580
     gtcatgtagt caccacaaca ggcataaaac caaatcccaa aaagattagt gcaattataa      2640
     attttcctat accaaaaacg ccaaaagaaa taaaatcatt tttaggacta tgtggattct      2700
     ataggaaatt tataccaaac tttgcaaacg tagttaaacc catgaccatg aaattgaaaa      2760
     aaggtgccac aataaacatt aaagaaaaat catacattga tgcatttgaa aaaatgaaag      2820
     ttttaatcac ctctgacccc atattaattt atcccgactt tgataaaaca ttttctttaa      2880
     ctacagatgc tagcaacata gctataggag cagttctatc acaaaaccat aaaccaatat      2940
     gttatgctag ccgaacatta aatgaacatg aaattaatta ttcaacaata gaaaaggaac      3000
     ttttagcaat tgtatgggcc acgaaatatt tcagatcata tctttacggc agaccttttg      3060
     agatcttaag tgatcataaa cctttagttt ggttaaacaa tatcaaggaa ccaaatatga      3120
     aattacaaag atggaagatt aaattaaatg aattcgatta tcagataaaa tatttaccag      3180
     gaaaagaaaa ttatgttgcc gacgcactat caagggttaa aatagaagaa aatatgttcg      3240
     aagacatccc cgaagaaaat ttattaggag aagctgcaaa tagcatagat gcaacggtgc      3300
     atagcgcaaa tgaagataat cagaattaca ttgcaatcac agaaagacca atcaactatt      3360
     attctcgaca gatcgaattt attaagggaa atgaagaaat tagagatgta caacattatt      3420
     ttcataaact aaaaatcaaa ataacttaca taaacatgtc aaacaccttc gcaaaagata      3480
     tcatcaagga atatttgtgc acaaaaaaga gtgcattata ctttcatgat gattcagatt      3540
     ttctcacatt ccaacaagca tatctagaaa taatcaatcc aaatcattta acaaaagtag      3600
     taagatgcac caaaaagtta gaagatatcc tcacttatgc agaattcaaa gaaaaaatat      3660
     taaaaagaca taaagactta ttacatccgg gaattgagaa aacagctaat tggtttagag      3720
     acgaatatta tttccctgac tatcaaaaat taatacaaaa cataattaac gaatgtgaaa      3780
     tctgtaacat cgcaaaaaca gaacatagga acacgaattt atctttcgaa actacaccag      3840
     aaatacaaaa tataagagaa aaatttgtca tagatttcta tatagtagga aaccaacaat      3900
     tcttgtcctg tatcgatatt tactccaagt tcgccactct catagaagtc acaagtaagg      3960
     attggttaga agctaaaaga gctataataa gggtatttaa tgaaatggga aaaccacaag      4020
     aaattaaggc agataaagat tcagcattta tgtgtgtagc cttacacaat tggttaaatt      4080
     cagaaggagt acaaattcaa gtaactacga gcaaaaacgg tatatctgat atagaaaggt      4140
     tccataaaac agtaaacgaa aaattaagaa taataggaaa cgaaacagac atagaaaaca      4200
     ggtatactaa gttcgaatta attctttaca tttacaatca caaaactaaa cataatgcga      4260
     cgaatagaat accagctgac atattcatgt atgcaggaag tcccgaatat aatacacaag      4320
     aaagaaaaac gaaaaagatt gacaggctaa atgagaaacg acatgatttt gaaatagaca      4380
     caagatttag acaatcacca ttagtaaaat cgaaaactac aaacccattt aaaaaaacag      4440
     gaaatttgag gaaaatagac gataaacatt ttgaagaaac taatagaggt agaaagataa      4500
     ctcattataa atcaaagttt aaaaagaaaa agaaaattaa taaaagtaaa tacgataatt      4560
     ccagggaagc agaaggaaac caaagagcac aacaatctgt ttaagattat cactctgtcg      4620
     ataattttat tgactataac taaaatggca atgggacaaa acattgagat aaatccgatt      4680
     aaagcccaaa atggatacct tgtattcaaa accgggtcaa tagatattcc aaccaatttt      4740
     gaatatcatt atttaagcat aaacataacc aaaactgagc aaatatttga aagtctttta      4800
     aaagaagcaa atgaatttaa tgacatttta caaattcgtt atttagcaga aaaactcaaa      4860
     agagaaataa atggaattaa actagccaaa cgtaacaaac gaggattatt taatattatt      4920
     ggcacaactt acaaatattt attcggaaca ttagatcaag atgataagga ggagttagag      4980
     cagaaaataa gtaacctatc agaaaatagc atacaaaaca cagatttaaa tatgattatt      5040
     gatgtaataa ataatggcat tgaagttatt aataagttaa aagaagatga tgaaagggag      5100
     caacaagcta gcgttttaat atttaactta caacatttta cggaatacat agaggatatt      5160
     gagttgggaa tgcagttgac gagacttggt atatttaatc caaaattatt aaaacatgat      5220
     gatttaacaa gaataagttc tgagaaattg ttgaaaatta aaacttccac ttggctaaaa      5280
     acagacacaa atgaaatttt gataatttcc cacattccta cagaaatcat aaaagcacca      5340
     atttttgaaa taattccgta tccagatgat aataatacca ttctaacaga aaatatattt      5400
     gataagtatt accttcatga agaaaaagta tttaataaag aaacaggaaa agtagtattc      5460
     gatgaatgta taaatggaat aatcaaacaa gaatccacaa gctgtaaata taccaaaaca      5520
     cataaaaatt tccaaattaa ttatgttgaa ccaaatattt tattgacatg gaatatccct      5580
     aaaacatttt taaatcaaaa ttgcattaat aaagaaataa agaacagcaa ctacttttgt      5640
     aattacaatc ataagcatat tattgtatct attctataag tttaagaaca taccaagaaa      5700
     attaattgta aaatatgtaa aaccaaagga agaaacacca aaaagtacag aaattgtaaa      5760
     cgatctacca aactcagtta agatagaaga aaatatawtg ttatatccaa ccctttccac      5820
     ctgaggacag gccaaattca aagaatgggg g                                     5851
//
ID   Gypsy-75_DEl-LTR repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_DEl-I;
KW   Gypsy-75_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-551
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7068-7068 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 551 BP; 209 A; 123 C; 76 G; 143 T; 0 other;
     agtgacatat ccataatccc atataactct tatgcacatg tccacacgcc tacacacaca        60
     tacaccctta gtaccccaat cagccaatat ctaattgcaa atgtacccaa gccttagact       120
     aaacatccag aacgaatcag ccgatatcta attgcaaatg tacccaagcc ttagactaaa       180
     catccagaac gaatcaaatt acgttatcag ttcgttccca cactttcgga tcccaatgga       240
     aaattaccat gcgagcaaaa ccccaagatt ctagactaaa caatcggatt gagtggctgg       300
     tgcattatca atcaacaatc caaagggcaa ttagaaaact cactcaatta acgccaactc       360
     cactcataga aagctctaaa gctcaaaacc gaggtatgat cgtcaaagaa gtttaagtta       420
     agaagcgagt tcagtttgag acctaaaaca attaggacgt gttcttccaa aaataaaaat       480
     tgtactagtt gataaataaa attaaataaa gttttttttt tatgtaaaac ttatagtacg       540
     aatatttaat t                                                            551
//
ID   Gypsy-75_LMi-I repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-75_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4552
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(323..1165,1146..1271,1255..1602)
FT                 /product="Gypsy-75_LMi-I_1p"
FT                 /translation="ISPTVASRSVCHYCLFFYGDQPTQKQLDRVRAHVIHL
FT                 ASRVSDLSLFDSKGEHKQVIANICSQVNQLQSRVTALGLDHEQFPILHPSL
FT                 TPQSESSXTHSVSVFSQLSXSFAKLPNPLXLLLKDIPSLSTHDIYQIKEXL
FT                 XLLVRFQQHAEAFNISXSVVLALLYPLAQGQLRDYIQGAITDNLTVKQFRR
FT                 MVTDKMSSARMCNGLERRFLWQVQDXXESLHDYLQRVKTAAIALDVALXEN
FT                 KLISIVIEXIRPADRSCLCFLSQPVSWQQLFEVAQSSSIHLKVAQSISAIS
FT                 FADNLRVSSQSGTAXNHTSPGISHIKSTQLWNQHNYGNSQVCLTWDSFGHL
FT                 VRQCLNRISSVLINAPGQRPVYRRVNDIFGQVDGGQAPLSYVCTTLRHEPV
FT                 CGFLGSGSSFLCLTLIGILNFPISLDYAEYYQCKMRLRLASAGRG"
FT   CDS           join(1717..1920,1896..2561,2599..2943,2754..3251,
FT                 3217..3387,3348..4511)
FT                 /product="Gypsy-75_LMi-I_2p"
FT                 /translation="YFWRSFSFKFSPSTKFALCECAXRILGPNTLSLLAAD
FT                 IGTFXVSHLSLQQADQLVTLLNXFPMFCLISXSYVLSDKLGETNILQYHIR
FT                 LTDDFPVTQSPYHLSPPKMKILRSKLSKMLQQGVIRHLTSPYAAPIFLVPK
FT                 DQGRDFRPVVDYRRLNKKVILESVPLPDLHNSFTWFTGANWFTVLDLNQAY
FT                 YQIPLTEQCKHVTAFCTDWNLFEFNRVPFGLATGAAVLTRLLDNILGDLKL
FT                 VCIYNYLDDLIIYSKTFLEHLHHIEQVFNRLQAAGLTVKPSKITLARHFSR
FT                 THQALRALKPPADKKGIAKFIGMANYFRWFVPNFAQIAAPLNNLRRKGAKF
FT                 VWGQDQQELLILLNLPSATRLVLGVPPPPPDPLVKGLSCRLMLPIWAFLPF
FT                 FCKNIRTKDNLVCLGPRPARAFDTIKSAICNPPRSWSSSPPPRPFSKRFVV
FT                 QTDASNLGISAVLLQEYQDQRQPLAFASRKLTDAETKYSVYECEALAVLFA
FT                 LDKFHFYLEHREFDLETDNQALSWVLARPRMTGRIARWVVRISAFQFKVRH
FT                 IKGTDNMFTDTLSRMYPRTPPRVFAVCIRGPPPESSSVPLADQLVCPVLTN
FT                 FPQLFGDLADKQDQDTNLGPLSTAFDLGNNFGTIKHRIRSGEQLTNYKIVK
FT                 GILCKNMRPNGNLKICIPASLVQPVFSYFHDSVIGGHLGFHKTCCKIKQHL
FT                 TWLGMDKDISDTVARCKLCQEAKXSCGPQHGLLHSDREQAPLDKLYIDHLG
FT                 PLPRTNRGNQYILVVIDAFTRFTWLLPTRNVTTSTTLHNLANIFSVFGPPK
FT                 QLVSDNAPGFRSGSFKAFCFHNGIKHVTTTPYYPKGSFAERVNRNLKSALI
FT                 IYHQNSPRKWDLTLPWLSFAFNNANHEVSKATPSSLIFAYQVNSPLANLWG
FT                 IHDLLPNPVTPQLIRNNWSRARNNIAIAHKHQAFHYNRNRRPFSGKVGDQV
FT                 YVRNFPAKQGPGKNLAKFTPRFKGPCTILKILSPVNLLVKEEQSGKIYCVH
FT                 VTQVKVAGRS"
XX
SQ   Sequence 4552 BP; 1161 A; 1062 C; 896 G; 1416 T; 17 other;
     actggtagca gatctttcga tccacttcat aaaactgata gacattttca ctgattgtat        60
     tttagtatta cgagaatatt ttgtatttgt gctgccttgc tgttttcatt tccttgtcat       120
     ttcagggtgc agtaccgcca cggctagaga atgtccaggg attgatcttt ttaggaagga       180
     ccatcttttg tacaattacg tgtgcaggcc aacctactga gggaagtgtt caattacgtt       240
     ctcgcctacg tggggctctc actgagctgg taacaatcaa cgcggatcgt atgggtgata       300
     ttaatactca tattctttat gaataagccc gaccgtagct tcaagaagtg tctgccacta       360
     ttgccttttt ttttatggtg accagcccac tcagaaacaa ttggataggg tccgtgctca       420
     tgtaattcat cttgcatctc gtgtgtctga tttaagtctg tttgattcta aaggcgagca       480
     caaacaagtt attgccaata tttgctccca agtaaatcag ttacaatcta gggtaacagc       540
     attagggttg gatcatgagc aatttccaat tttgcacccc tctttaacac ctcaaagcga       600
     aagcagttts acccacagtg tgtctgtgtt ttcgcagtta tctamatctt ttgctaaatt       660
     gcccaaccca cttatkctac tacttaaaga tattccatca ttgtctactc atgatattta       720
     ccaaatcaaa gaacwtttgt kgttattagt gcgcttccaa caacatgccg aggcatttaa       780
     tatttcgkat tccgtggttt tggctctgtt gtatcccctt gcccaaggtc agctcagaga       840
     ctacatccaa ggtgctatta ctgacaattt aactgttaaa caatttcgcc gtatggtaac       900
     agataaaatg tcgtcagcwa gaatgtgtaa tgggttggaa cgtaggtttc tttggcaagt       960
     ccaagacagw macgagagct tgcacgatta tttacagaga gttaaaacgg ctgctatagc      1020
     attagatgtt gccttamctg aaaataaatt aatatcaatt gtcatcgaas ggattagacc      1080
     tgctgataga tcgtgcttgt gtttccttag tcagcccgtt tcttggcaac aattatttga      1140
     agtagctcaa agtagctcaa tccattagtg ccatttcctt tgctgataat ctccgcgtct      1200
     cgagtcaatc cggcaccgca aasaaccata ctagtcccgg catatcgcac ataaaatcaa      1260
     cacaactatg gtaactccca ggtgtgtctt acatgggatt ccttcggtca tttggtaaga      1320
     cagtgcctga accgcatctc gtccgtccta ataaatgcgc caggacaacg accggtatac      1380
     cgtcgcgtaa atgacatttt tggccaggtc gatggtgggc aagcaccttt atcctatgtt      1440
     tgtactacgt tacgacatga accagtttgc ggatttctcg gttctggtag ttcttttctt      1500
     tgtttaacct tgattggtat cttgaatttt cccatctcac tagactacgc cgagtattac      1560
     cagtgcaaga tgcgtctcag gcttgcctct gcagggcgcg gttaggggca gtttgtctat      1620
     agggaccttt tttgcccact tacctttgct ttggtcaagg atttaccagt kaaattactc      1680
     ttaggttgtg attcatttaa aacagggttc tgttaatatt tctggcgctc cttttccttt      1740
     aaattttccc cttcaactaa gtttgccttg tgtgaatgcg ccgakcgcat tttaggccct      1800
     aatactcttt ccttattggc tgctgatatt ggaacgttcg akgtttccca tctttcctta      1860
     caacaggctg atcaacttgt tactctcctc aataaktttc ctatgttttg tctgataagc      1920
     taggcgaaac taatatatta caatatcaca ttcgcctaac tgacgatttt ccggtgacac      1980
     aatcaccata tcatttgtca ccaccgaaga tgaaaatact cagaagtaaa ctttccaaga      2040
     tgcttcagca gggagttatt aggcatttga catcccctta tgctgccccc atatttttgg      2100
     tgcctaaaga tcagggtcgc gactttcgcc cagtagtcga ctaccgacgt cttaataaaa      2160
     aagttattct tgaatcagtg cccctgcccg atcttcataa ttccttcacg tggttcactg      2220
     gagcaaattg gtttactgtc cttgacttaa atcaggcata ttatcaaata cctcttactg      2280
     agcagtgcaa acatgtaacc gcgttttgta ccgactggaa cctttttgag tttaataggg      2340
     tcccttttgg actagctaca ggtgctgcgg ttcttactcg tcttcttgat aacatcctag      2400
     gtgatcttaa attggtctgc atatacaatt acttggatga tttaattatt tacagcaaaa      2460
     cctttctcga gcatctccac catattgaac aagtctttaa taggctacaa gctgcaggcc      2520
     ttactgttaa accatcgaaa atcaccttag cccgtcattt ttaggacatt tagtttctgg      2580
     caccagtgtt cgcattgatc aagaacgcac caagccctta gagctctgaa acctccggcc      2640
     gacaaaaaag gcattgccaa attcatcggc atggcaaact attttaggtg gtttgtacca      2700
     aattttgctc aaattgcagc tccccttaat aatttaaggc gcaaaggagc taagtttgtt      2760
     tggggccaag accagcaaga gcttttgata ctattaaatc tgccatctgc aacccgcctc      2820
     gttcttggag ttcctccccc cccccccgac cctttagtaa aaggtttgtc gtgcagactg      2880
     atgcttccaa tctgggcatt tctgccgttc ttttgcaaga atatcaggac caaagacaac      2940
     ctttagcctt tgcttctcgc aagctcaccg atgccgaaac taagtactca gtgtacgagt      3000
     gcgaggctct cgccgtacta ttcgccttgg ataagttcca tttttatttg gaacataggg      3060
     aatttgactt ggaaaccgat aaccaggctt tgagttgggt gttggcgaga ccccgcatga      3120
     ctggtcgcat tgccaggtgg gtcgtccgca tttctgcatt tcagtttaaa gtgcgtcata      3180
     ttaaaggcac tgacaatatg ttcaccgata ctctaagccg tatgtatccg aggacccccc      3240
     cccgagtctt ctagtgtccc tcttgctgat cagttggttt gccctgtgct taccaatttc      3300
     cctcaactat ttggtgattt ggctgataaa caagatcagg acactaattt gggaccatta      3360
     agcaccgcat tcgatctggg gaacaactaa ctaattacaa gattgttaag ggcatattgt      3420
     gtaagaacat gcgccccaat ggtaacctga agatttgtat tccggctagt ctggttcagc      3480
     ccgtgttttc ctattttcat gactctgtca taggtggaca ccttggtttc cataagactt      3540
     gttgtaaaat caaacagcat cttacttggc tgggcatgga caaggatatt agtgacacgg      3600
     ttgctcgttg taaattgtgt caagaggcca aacmtagctg tggaccccag catgggttgc      3660
     ttcattccga tagagagcaa gcgcccttag ataaacttta tattgaccac cttggtccat      3720
     tgccacgcac taatagaggt aaccaataca ttttggtagt tattgatgct ttcactaggt      3780
     tcacttggct cttaccaact cgtaatgtta ccaccagtac tacccttcat aatcttgcca      3840
     atattttcag tgtgtttgga cctcctaaac aacttgtcag cgataacgcg cccgggtttc      3900
     gatcgggttc ctttaaggct ttttgtttcc ataacggcat caaacatgtg actaccactc      3960
     catactaccc taagggatct tttgccgaaa gggtgaaccg caatcttaag tcggccctca      4020
     tcatttacca tcaaaattct ccccgtaaat gggatttaac attaccttgg ttgagctttg      4080
     ctttcaataa tgctaatcat gaggtgtcta aggctactcc gtcttcttta atatttgctt      4140
     accaagtcaa ttctcccctg gccaacctat ggggcattca tgatttgtta cctaatccag      4200
     ttacaccaca gctcattaga aataattgga gtagagccag aaataacatt gccatcgctc      4260
     ataaacacca ggcctttcat tacaatcgta atcggcgccc attttctggc aaagtaggag      4320
     atcaagtcta cgttcgtaat tttccagcta aacagggccc cgggaaaaat ctagccaagt      4380
     tcactcctcg ttttaaaggt ccatgtacca tactgaaaat cctgagtcca gttaatcttt      4440
     tggttaaaga agagcagtca ggtaaaattt actgcgttca tgtcactcaa gtcaaagttg      4500
     ctggccgatc ttgacccccc ccccccccct tcttcttttg gggcggggag at              4552
//
ID   Gypsy-75_LMi-LTR repbase;    DNA;    INV; 2138 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-75_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2138
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 2138 BP; 447 A; 422 C; 490 G; 777 T; 2 other;
     tgagccgtgg gctcgttctg ttcgaaatcc gcgccccgat ttgtgtttgt ttctcctcct        60
     aactgtggtg gcgctacctc cgttggtgtt tccgtcggcc gccgggacgc gacgccaggg       120
     gagtgggtck gtgacagccg atgcggacgc ttgggccggg tccgtgaacg ttctccgctc       180
     gggcgtggac gccgagctgg ttttgtgtct ggcgtcgccg gctgttttct gctttggagt       240
     taagtttgac ttcgctgttg cgttagttac gtgttttgaa atgtctcgcc tcccatgcga       300
     ggacgatctt gaattggtat attgagggta acgagcggaa tttatttggc gttttgccct       360
     tctgcggctt ggttgccacc cccaggcgta gtcggaactt agggtttggc ccttttcccg       420
     ctcgtcgtcg ttgctgccgt cggcgagttg tagtttgcag ccttctgttc gtgtcttttc       480
     tgagtggtct ggtgactatc catacatgtg gcagtgacgc tagcccgcgg cctttgagga       540
     agtttggttt taactgtttt tcgcctcctc ccctatgtca gccgtggcgg tcctctccct       600
     ataaaggtgc tcatgtgtta tgattattga tttagagatt gttgttgtat cactgtttag       660
     caaactcgta gcagaagctt tacctgatgt gcgcaatgtg ctctggccag tatttaaagg       720
     gcactgttca attacactgt tgacgttggt gcttgtatat tgtctattgt tttcatcatc       780
     tcgtttggcc aatgtattgt gtaaaatggt atctttattg tgaagttcca aacttgattt       840
     gagccatatg tctacgaaag gaaattgcct aaatagcatc caaaaagggc attgttaata       900
     atatatctag agttattgcc tttccttctt ttgagcgcca gctgatgttt agtgtaactc       960
     gtcgagttga aacggccatt taggtaaagg tctaagcctt ctctctgttg cgcaacgtgt      1020
     tctggccagt atttaaaggg cgttgttcaa ttactctgtt gatggctttg gtataattgt      1080
     atattaaccc aaaggggtat cttaatatat ctagtgttac tgccttttaa ttgtctagtt      1140
     ttggccaaag tttttttaaa ggtattttta ttgtgaaaat ttccaaattt aagctgcgcc      1200
     atatgtgtcc aaaaaaaagg ggcccattat tttaatctat ctagggttac tgtgtgcatc      1260
     tttcgggcca gtacactgta attggagtct tgtttattgc aaatggtcat ttatgttatg      1320
     tggtgaggtt tcattctaaa ttgcacagkg tgctctggcc agtgtttaag aggcacggtt      1380
     caattacgct gttgggtttg cttgcataat tacctaagct aaacttgtgg cgccactgtt      1440
     aatagggcta agctttctct ctttgcgtaa cggctcgcct agtattttaa aagcgctatt      1500
     taataccctg ctcatgtgaa acttccagaa ctgacttgtt atttttaaat tgtctaaaca      1560
     gaatcataac aggcccatta ttttaatgtg ttcagagtta ctgtttgcat ctttcgggcc      1620
     agtagattgt aactgtagtc ttatttattg caaatggtca tttatgttat gtggtgaggt      1680
     ttcattctaa attgcacagt gtgctccagc caatgtttag aagcacggtt cagttacact      1740
     gctggtgttt gtatacttgc ctaagcaaag cctgtagcgc ccactgttaa ttatatctag      1800
     tgttactgcc tttgctattc cttgctcaat ctttctttta aaaatggtat ccttgttgta      1860
     atattgtttt ttttaaatct cacctgttat ttttgtaaag gcaaatgatt gctcccttct      1920
     tctttaaatt tagaggatct ccttattgta ttgtgctgag catctgtatg tttacctatt      1980
     catgccagct gttatctgat gttaagcgtg atgttaaatt ttgcccttac taataaatta      2040
     cattgtcttg gtattttgat gaaaatgtcc atcagtgata ccctcctgtg cccagtatcc      2100
     gtgtgctttt attaaaggga ttaaaatccc ggttttca                              2138
//
ID   Gypsy-76_AA-I repbase;    DNA;    INV; 4868 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_AA_;
KW   Gypsy-76_AA-LTR; Gypsy-76_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4868
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 2939232 2944099.
XX
CC   'CTCTT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..2593
FT                 /product="Gypsy-76_AA-I_2p"
FT                 /translation="MEESRGFPPFRCDRIESAKLAKEWKRWKESLDCYFEA
FT                 YGITDQRVKRAKLLHLGGSALQTVFRNLGDPEHVPLVALDPKYYDMAIDQL
FT                 DEFFEPRHQSTSERRKLRQMKQQANERFADFMIRLKQQASECGFDRYGSEV
FT                 GQILTNIYLTDAVVEGCMSNEVRKMILLKDLPFPEIEMLGVSQEGVELQVE
FT                 EISEGQRPGKMYRVTEQRADRRKITSNAEKLQGRNCYNCGRLGHISISAGC
FT                 PARGKQCHNCKSFGHFEKLCRKPKRQYERTSNAKQIRAIETTHMSDDTPVG
FT                 QDLPGSPEKDKVYYAFYTGNELNVIPCVIGGVKVDMLVDSGADANLITAKA
FT                 WSMMKEKHISIHSSEKGSCRMLRGYGSDKPLTILGSFTSDVATGSKSVRAE
FT                 FLVVEEGQRCLLGDKTAKQLGVLRVGINVGQVANVPKPLGKIKGIKVNIQV
FT                 NPEVTPVFQPMRRIPLPLEEAVGRKIDELLKRDVIEAKSGPTSWVSPLVVV
FT                 GKANGEPRLCLDLRRVNEAVLREHHPMPVVEDYIARLGQGSIWSKLDVKEA
FT                 FLQIELAEESRDLTTFITSRGLFRFKRLPFGLVTAPELFQKAMDEILAGCD
FT                 GAYCFIDDITIEGKNAEEHDNRLEKVE"
FT   CDS           2890..4815
FT                 /product="Gypsy-76_AA-I_1p"
FT                 /translation="MNKYIPNLATIDEPLRKLLQKDAKFEWTERQSDAFEA
FT                 IKAALCRVENLGFFKMEDRTAVIADASPVGLGAILAQFDKDGRHRVISFAS
FT                 KSLTETERRYCQTEKEALALVWSVERFQYYLLGKPFDLVTDCKVLELLFSK
FT                 RSKPCARIERWVLRLQMFEYKVVYVSGKDNVADTLSRLAVRDAKPFDITEE
FT                 VIIHEVSTYAAGSVALTWREIQDATNTDSDIQQVKNTLELGHLQDLTVEYR
FT                 VCANELSVYENVLLRGDRIIVPLSLRKRVLATAHEGHPGITMMKNHLRTNV
FT                 WWPKMDAEVERYVKQCRGCTLVAAPEPPEPMQRSQLPSSPWQTIALDFLGP
FT                 LPEGQHILVVIDCYSRFMEVVEMESTTAKDVVRELSIMFSRYGMPSALKAD
FT                 NAPQLSAECAEFREFCVANGIKLLNTIPYWPQSNGEVERQNRSILKRLRIS
FT                 QELGQDWRVELRRYLLTYHSTKHPSTGKSPGELMFGRHIKSKLPTVINFDE
FT                 DACVRERDAISKEKGKVYGDKKRQARGSELLEGDVVLAKRMRKASKVDSDF
FT                 ANEEFIVKEKTGTDTIIQSKVSGKQYRRSSAHLKKIGDRETVDDSVVPGQE
FT                 KIGDENNRDLPIEPSSEENHCLKRASGAKRISNQPVRYQDYVTY"
XX
SQ   Sequence 4868 BP; 1507 A; 883 C; 1260 G; 1218 T; 0 other;
     gttggcgacg aagatagggg ataaaaagta agtaaaaaaa aaactcacgg gttgtgtgga        60
     acgatttaat ttatccaatg aacaattatg tggcaatcag aatacggatt atgattgtaa       120
     atcgacaaaa ccatgaattt aggtgtttgg gaagatgcga gaacaaaaga gtgttctccg       180
     gagataagct ggatgggaag aaaaacattc agtggagtcg gcagaaatta ttgaatttct       240
     ccagttgcaa acgcaagaat cggaaggatt cttcacgaat tgggttgtat cagttggata       300
     cttttgtcgc aggaaaaaaa atggtatttt ttcaagatgg cgctgaaaaa aaaagagtaa       360
     agtttggtcc gcacgctaac ttgtggaaat agcgccaaac ggagctggtg cagtgtagta       420
     gtagtagtag tggaatcaat cgaaaagagg aggtgtgaag gggtgaaaga aaaatgaatg       480
     aagtagtatt ggtagaacgg gatgaaattt gctgacgtca caatttacac tgttgctaaa       540
     ctttcatgtg caaataaagt tgtttaccac tcatggagga acgtttacga atggttggat       600
     ataatgattt cgtggacggt agtgcaatga aattgtttac atggatggtt aatgatattc       660
     tgatgagata atggtgttcg gaaattatgt taacaagtgg ttatacgtct atttttagat       720
     ggaagaatct cgaggtttcc ctcccttccg atgcgatcgg attgagtcag cgaagttggc       780
     caaagaatgg aaacgctgga aggaatctct cgactgctat ttcgaggctt acgggataac       840
     cgatcagaga gttaaacgag caaagctgct gcacctgggt ggatccgcac tacaaactgt       900
     gttcagaaat cttggagacc ccgaacacgt accgttggtt gcgttggatc caaaatatta       960
     tgacatggcc atcgatcaac tagatgagtt ttttgaaccg cgtcatcaaa gcacatctga      1020
     acgccgaaag cttcgccaga tgaagcagca agctaacgag aggtttgctg attttatgat      1080
     acgcttgaag cagcaagcat cggaatgcgg gtttgacaga tacgggtctg aagtaggcca      1140
     gatcttaacc aatatctatc tcacggatgc cgttgtggaa ggatgcatgt cgaacgaagt      1200
     gcgcaagatg atattactga aagatcttcc tttcccggaa atagaaatgc ttggggtatc      1260
     gcaagaaggt gtggagttac aagttgaaga aatttcggaa ggacaacgac caggaaaaat      1320
     gtacagagtg actgaacaaa gagcagaccg tcgcaaaatc accagtaatg ccgaaaaatt      1380
     gcaagggaga aactgctaca attgcggacg gctgggccac atttctatat cggcgggttg      1440
     tccagctcgc ggaaagcaat gccacaattg caaaagtttc gggcacttcg aaaaactctg      1500
     tcggaagccc aagcgtcagt atgagagaac gtcgaatgcg aaacagatcc gtgcaattga      1560
     aaccactcac atgtctgatg acaccccggt agggcaagat ttgccgggaa gcccggagaa      1620
     ggataaagtg tattatgcgt tttacactgg aaatgagtta aatgtaattc catgcgtaat      1680
     tggaggagta aaagtcgaca tgctggtgga ctcaggcgcc gatgccaacc ttatcaccgc      1740
     caaagcttgg tctatgatga aagaaaagca catttcaata cattcttccg aaaaaggaag      1800
     ctgtagaatg ctgcgtggat atggtagtga caaaccactt accattctgg gctcgtttac      1860
     atctgatgtt gctaccggtt caaaatctgt tcgcgcagaa tttctagtgg ttgaagaagg      1920
     tcagcgttgt ctattaggag acaaaacggc caagcagttg ggtgtgctgc gagtaggcat      1980
     aaacgttggg caggtggcaa acgtgccgaa accactgggc aaaatcaaag gcatcaaagt      2040
     taacattcag gtgaacccag aggtaacacc tgttttccaa ccgatgcgca gaattccttt      2100
     accgctggaa gaagcggttg gcagaaaaat tgatgaactt ctgaagcgtg acgtaattga      2160
     agctaaatcg ggtccaacca gctgggtgtc cccattggtc gttgttggga aagccaatgg      2220
     ggagcctcga ttgtgtctgg atttgcgtcg ggtcaacgag gctgtgctta gagagcacca      2280
     cccaatgccg gttgtcgagg actacatcgc acgtctggga caaggaagca tttggagcaa      2340
     actcgatgtg aaagaagcgt tcctgcaaat agagttggca gaggagtcaa gagatttaac      2400
     cactttcatc acgagtcgcg ggttgttccg ttttaagcgc cttccatttg ggcttgttac      2460
     agcgcccgaa ttgttccaga aggcgatgga cgagattctg gcgggctgcg acggggcata      2520
     ctgtttcatc gacgacataa ccatcgaagg aaagaacgca gaggagcatg ataatcgcct      2580
     tgagaaggta gaatgaataa tttgattttc ttcttctgtt ttatcacgtg aatttttaaa      2640
     gaatgaataa aaaaacatgg taaagtactt atataatgtt tattttaggt tttgtctcga      2700
     ttgaaagagc gatgtgttga gcttaactgg gaaaaatgta aactgagagt tactgagctt      2760
     gagattcttg gccataggat tggcacaaat ggaataagcc catctgaatc gaaaattgca      2820
     gccatacgca cgttccgcca acctcagaac gaggctgaag tgcgaagctt tttagggttg      2880
     gcaaattaca tgaacaaata cattccaaac cttgctacga ttgatgaacc cctaaggaag      2940
     ctattacaga aagatgcgaa attcgagtgg acagagcgtc agtctgatgc attcgaagca      3000
     attaaggcag cattgtgcag agtcgagaat cttgggtttt tcaaaatgga agatcgcacc      3060
     gctgtgatag cggatgcaag tcctgtgggg ctaggagcaa tactagctca gtttgataag      3120
     gatggacgac atagagtaat aagtttcgct tctaaatcat tgactgaaac agagcgacgt      3180
     tactgtcaaa cagagaaaga agctctagct cttgtatgga gtgtggagcg gttccagtat      3240
     taccttttag gaaaaccttt tgacctggta accgactgca aagttctaga gcttctattc      3300
     tccaagcgat ctaaaccgtg cgctcgcata gaacgatggg ttcttcggtt gcaaatgttt      3360
     gaatacaaag tagtgtatgt atcggggaaa gataacgttg cagatacatt atcgcgactc      3420
     gctgtgcgag atgcaaaacc gtttgatatc actgaagagg ttattataca tgaagtatct      3480
     acatacgctg ctggaagcgt ggcactcaca tggcgggaaa tacaggatgc tactaatacc      3540
     gatagtgaca tacagcaagt gaaaaatacg ctagagttag gtcatcttca ggatttaact      3600
     gttgaatatc gtgtttgcgc gaatgagttg agtgtatacg aaaacgtcct cctacgtggt      3660
     gatcggatca tcgtaccact gtcgcttcgc aaaagagtat tagccactgc acacgaaggt      3720
     catccaggca ttactatgat gaagaatcac cttagaacaa atgtttggtg gccgaaaatg      3780
     gacgctgaag tagagagata tgttaaacaa tgtagagggt gtacattggt tgctgcacct      3840
     gaaccaccag agccaatgca acgtagtcag cttccatcat ctccatggca aacgatagca      3900
     cttgatttcc tgggacctct tcctgagggg cagcatatac tagttgtaat agattgttac      3960
     agcaggttta tggaggttgt agagatggaa agtacaactg ccaaagatgt tgtacgggaa      4020
     ctctcaatca tgttcagccg atatggaatg cctagcgcac tgaaagctga taatgcacca      4080
     cagttgagtg ctgaatgtgc cgagtttcgt gagttttgcg tagctaatgg tataaagctt      4140
     ctgaacacaa ttccctattg gccgcaatca aacggagagg ttgagcgcca aaaccgctct      4200
     attcttaaac gactgcgaat ttcccaagaa ctgggtcaag attggagggt agaattgagg      4260
     cgttatttgc tgacttatca ctcgactaag catccaagca caggtaaatc cccaggtgag      4320
     ttgatgttcg gccgtcacat caaaagcaaa ttgccaactg tgatcaattt tgatgaggat      4380
     gcctgtgtac gcgagcgtga tgctatttct aaagagaagg gtaaagtgta tggcgataag      4440
     aagcgtcagg ctagaggaag tgagttactg gaaggggatg tggtgcttgc aaaacgaatg      4500
     cgtaaagcta gcaaggtaga tagtgatttt gctaatgaag aattcatcgt caaagaaaag      4560
     actggaactg atacaatcat tcaatcgaaa gtaagcggga aacagtatag gcgtagttca      4620
     gctcatttga agaaaattgg agatcgcgaa acagttgacg acagcgtggt tcctgggcag      4680
     gagaaaattg gcgatgaaaa taacagagat ttgccaattg aaccatcgtc ggaagaaaac      4740
     cattgtttaa aacgagcatc tggcgctaaa aggatttcta atcagccagt gcggtatcaa      4800
     gactatgtaa catactgaat ggatttaaga tataaagtga aactgcagtt tgaaataaaa      4860
     atggggat                                                               4868
//
ID   Gypsy-76_AA-LTR repbase;    DNA;    INV; 165 BP.
XX
AC   supercont1.16;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_AA_;
KW   Gypsy-76_AA-I; Gypsy-76_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.16; Positions 2939067 2939231.
XX
SQ   Sequence 165 BP; 52 A; 30 C; 37 G; 46 T; 0 other;
     tgtagtatat taccactacc ttaaccttaa taaataaaga ttatctctaa tgtatattac        60
     ctttcattct gagaactttg agctacacac tggggacggt gggaatggga ctgggaaggg       120
     gacattcata cgcacggtag caagacgagt ggacgttata ctaca                       165
//
ID   Gypsy-76_CQ-I repbase;    DNA;    INV; 2989 BP.
XX
AC   AAWU01003228;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_CQ_;
KW   Gypsy-76_CQ-LTR; Gypsy-76_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2989
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 531-531 (2011).
XX
DR   Genome; AAWU01003228; Positions   11529   14517.
XX
CC   Positions [1875-2387] - Integrase core
CC   'AATG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           306..2975
FT                 /product="Gypsy-76_CQ-I_1p"
FT                 /translation="MSDDESKVEVKEETSKEESPVIAKIDFPRFDTDDIET
FT                 WFICLEAAFSVNGIKRDKTKFNAVIVALENRAKYVYSVIKSCSDSTSTNKY
FT                 DTLKAAVIAHFRPSESQQLTSLLSGLSLGDLEFVFPYVDDLCIASENIVQH
FT                 KAHLRTVFERLRQNGLTINTGKCQIGLPKVEFLGHLITPEGIKPKPDKVKA
FT                 ILDFPRPSVAKQLKRFLGSINFYRRFIKNAAIHQQVLHSMISGNIKNDNTP
FT                 LVWTEATNGAFEKCKQDLVNCTFLAHPSPEAKLALETDASGTAIGAVLHQI
FT                 TEDGPLPLAFFSKKLNESEQKSSTYDRELLGIYEAIKYFKDTLEARDFCVY
FT                 TDHKPLTTAFQQRPERANPTQLRRLCFISEYTTDVRHVPGDDNKVADMLSR
FT                 IESITSADTIDFDLMAEQQKTDPELETFLKNPPTNTTLNLKSLKSPNSKSP
FT                 IYCDISTGVIRPFVPAQLRRSVIRKLHSGSHPGLRATTALVSERYVWPNLR
FT                 RDCKEVVTSCIPCQKSKVHRNNRSPISQIATPDTRFSHVHMDLIGPLPPSD
FT                 GNAYCLTLIDKFTRWPEIIPIPNMTAHTVARSFVAGWIARFGVPATVTTDL
FT                 GRQFESELFRTLTQLLGITHLRTTPYHPQANGQIERVHRHAKSAIMCHQTP
FT                 NWTEVLPLVLLGMRTSLKEDLQATAADLVYGTSLRLPGEFFTAEESKSPTP
FT                 EFVTDLKATMEKLRPTPTSNHSKGTTCVQKDLDTCSHVFVRVGAIKPPLTQ
FT                 PYTGPHKVIRRKGKVFVVEINGKHCPISIDRLKVAFTQAEDEPSRAHVQPN
FT                 TTGSSETSRTSEPKKTPSSKSKPKSKSSLSEPRLQTSLPEPKLFKPLKSVI
FT                 KNTKTSDAEPPTASSEQSTYRTRSGRQVKFPRQYWKI"
XX
SQ   Sequence 2989 BP; 912 A; 753 C; 601 G; 723 T; 0 other;
     atcagaaaat atataactct cgtctgagaa ggacgccatc agaaccacgc ggtttagatc        60
     cggtttctac agcgtccgaa ataagtaaca ttagttgtta cattggtgac cccgaacgta       120
     aaactaataa attccgcgtt ccgcagtgac ccgcgaaagt gattttattt ttatttttcg       180
     caaaaatcac tcgtgttgcg cgaatcttgt tcttcaaaaa gaaaccattt tgtacgcctt       240
     tgtactaacg ccacgttaag tgaactactg cttcagtgca gtaagaagtt actgccttag       300
     taacaatgtc ggatgatgaa tctaaagttg aggttaagga agaaacttcc aaggaagaat       360
     cgcccgtaat tgcaaagatc gatttcccac gtttcgatac ggatgacatt gagacgtggt       420
     ttatttgcct tgaggccgca ttcagtgtta atggaattaa acgagataaa acgaagttta       480
     atgcggtgat cgttgcgctt gaaaatcgtg ctaaatatgt gtattcggtg atcaaatcgt       540
     gtagtgattc gacttccaca aacaagtacg acacgctgaa agccgcggtg attgcgcatt       600
     tccgaccctc ggaatcgcaa cagttaacta gccttttgtc cggactgtct ctcggtgacc       660
     tagaatttgt tttcccttat gtcgatgatc tttgcattgc gtctgaaaat atcgtacagc       720
     ataaagcaca ccttcgcaca gtatttgaac ggttgaggca aaatggtctc acaatcaaca       780
     ctgggaaatg tcaaattggt ctaccaaaag ttgaatttct tggtcatctc atcaccccgg       840
     aaggtatcaa gccgaaacca gacaaggtaa aggcgattct tgattttcct cggcctagcg       900
     ttgccaaaca actaaagcga tttctaggga gcataaattt ttatcgacgc ttcataaaaa       960
     atgctgctat ccaccagcaa gtccttcatt caatgatatc tggcaacata aaaaacgaca      1020
     atacgccgct tgtgtggacc gaagcaacga atggagcttt tgagaaatgc aaacaagact      1080
     tggttaactg cacttttctc gctcatccgt cgccagaagc aaagctcgcc ttagaaacag      1140
     acgcttcggg cacggcaatt ggcgcagttt tacaccagat cactgaggat ggcccacttc      1200
     ctctagcctt cttctctaaa aaattgaatg aaagtgaaca aaaatcgagt acatatgacc      1260
     gagaattgct aggtatttac gaagccatta aatacttcaa agacacccta gaagctcgtg      1320
     atttttgtgt ttacacggat cataagccgc tcacgacagc ctttcaacaa cgcccagaaa      1380
     gagctaaccc tacgcagtta cgcagactct gtttcatcag cgagtacaca acagacgtgc      1440
     gacacgtgcc tggcgacgat aataaagtcg cagacatgct aagccgtatc gaatcgatta      1500
     cttccgctga tacaatcgat ttcgacctca tggcagaaca acaaaaaacc gatcccgaac      1560
     tagaaacctt tttaaagaac cccccaacca acaccacgtt gaacctcaag tcactcaaat      1620
     cgccgaattc aaaatcacca atctactgtg atatctccac gggagtgatt cgaccgtttg      1680
     tacctgcaca gcttcggcgc agcgtaattc ggaaactcca tagtggatct catccgggat      1740
     tacgagcaac caccgcactt gtctcggagc gttacgtgtg gccgaacttg cgtcgagatt      1800
     gtaaggaagt cgtcacgagt tgcattccct gtcaaaagtc gaaggtccat cgaaacaatc      1860
     gctcaccaat ttcgcagatc gccaccccag acacacgttt ctcacacgtc cacatggacc      1920
     tcatcggacc gttaccacct tcagacggta acgcgtactg tctaacgctg atcgacaagt      1980
     ttactcggtg gcctgagatc attccaatac caaacatgac agcgcacacc gtcgcgcgct      2040
     cttttgtcgc aggttggatc gctagatttg gagtaccagc caccgtgaca acagaccttg      2100
     gaaggcaatt tgagtctgag ttgtttagaa cgctcactca gttgcttggt attacccatc      2160
     tgaggacaac accttatcat ccgcaagcaa acggccaaat cgagcgagtt catcgtcacg      2220
     ctaaatcagc aatcatgtgt catcaaactc cgaactggac agaagttctc ccactcgttc      2280
     tcctcggaat gcgaacatct ttgaaggaag acttacaagc aacagcagct gatctcgtct      2340
     acggaacatc gctgcgctta cccggtgaat tttttacagc agaagaatct aaatcaccta      2400
     cgccagagtt tgtaactgac ttgaaggcaa ctatggaaaa gttgcgtcct actccaacat      2460
     cgaaccactc gaagggaaca acgtgtgtgc agaaggactt agatacctgc agtcacgtgt      2520
     ttgtgagagt tggagccatt aagcctccgc tcacacagcc gtatactgga cctcacaaag      2580
     taatacgcag aaaaggaaaa gttttcgtcg tcgaaataaa tggcaaacac tgtcccatct      2640
     ccatcgaccg tctcaaagta gcttttacac aagctgaaga cgaaccaagt cgagcacatg      2700
     ttcaacccaa cactaccgga tcatccgaaa cctccagaac atctgaacct aaaaaaactc      2760
     catccagtaa atctaaaccc aaatctaaat ccagtttatc tgaacccaga cttcaaacca      2820
     gtttacctga acccaaatta ttcaaaccct taaaatctgt aatcaaaaac actaaaacca      2880
     gcgatgctga accacctaca gcatcatcag agcagagtac ctacagaacc agatcaggcc      2940
     gacaagtgaa atttccccgg cagtattgga aaatctaagg gaggagtac                  2989
//
ID   Gypsy-76_CQ-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   AAWU01003228;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_CQ_;
KW   Gypsy-76_CQ-I; Gypsy-76_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 532-532 (2011).
XX
DR   Genome; AAWU01003228; Positions   11383   11528.
XX
SQ   Sequence 146 BP; 42 A; 47 C; 25 G; 32 T; 0 other;
     tgtggcgact catgcgcccc gaattcccct atactgtggg aagcagaata accgataaat        60
     aagaacctac tacctactta ctctcttcgt gcactcagca cacgatctgt tgatcggtct       120
     caacaccgat cacagcacac accaca                                            146
//
ID   Gypsy-76_DEl-I repbase;    DNA;    INV; 6919 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_DEl-I;
KW   Gypsy-76_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6919
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7078-7078 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           5509..6816
FT                 /product="Gypsy-76_DEl-I_3p"
FT                 /translation="MTNATVKLNNYTNADYIPIVDGDIVIWDSYGYLRHST
FT                 NLTSYEDYADQTEAMTKTFTNDHRTQVITTDLGHIRKLVATLKVHHRDNRS
FT                 INLIGTALKVIAGTPDFNDWEQIKFNQEQLFNAEEGQSELNIKFQERLNAL
FT                 TNSMNQIQKVDRDEETHLLEIILAKNRIVITDLENILMGLTLAKLNIVSPA
FT                 ILDSSDISEFKDKQPTNISLVEILEVYSISVFKNSEIIHFLIKFPYSKLVC
FT                 KKITIYPVQHHNKILDFENGDLVADCAARIVNIGGCKATVGATFCKELQGD
FT                 TCAQQMVAGVTAQCSTLPGHLSPVTVVDHGTLIINDAQVTIIDDLGLKQEI
FT                 SGSYLVTYSSKVSLNGSWYINQLGTSRKKPAVSAMTLVNITAHQDRLSLPF
FT                 LHELSLRNLHHIGPLEKNLPRVPSSATSSPYLPPSYCALPFG"
FT   CDS           join(1790..2041,1938..2387,2354..2938)
FT                 /product="Gypsy-76_DEl-I_1p"
FT                 /translation="MTHDAXSASVLNXKFREDALHAFISGLKKSLKVAVFP
FT                 AQPRDLPTALALAQEAESSNDRSIFVASFARGPTTFVEKFLTPVLFLPKRR
FT                 NQVTIEAYLWPVSPAGRPPSWKNSSHQSYSSNHEQNQNTGAIKKNPHFKKN
FT                 XNWSNNKTPSFKQKPSPFLGNSQVRPPPEPMEVDTLSQFKQSTNWRKGQST
FT                 RSHQKINYLPEEKLTGEEYDSVAQAYATEIEDDLDTDXTCNFLEFRYRXYL
FT                 QFFRIKSLLPYXTRRLAGREVKLLIDTGTSKNYIAPLPMLKGVVNVETPFS
FT                 VKSIHGHTQITKKCLISIFQVKSHFFLLNALKGFDGIIGLDLLKQVNAKLD
FT                 FTKNILQAGNATEKLQFTKSENVNFINIDDESVPHAIKPVFDNMIKKNAKA
FT                 FADPDEALPFNINTTATIKQMGNRCTPSRTHTPRA"
FT   CDS           join(2866..3342,3240..4442,4405..5088,5078..5416)
FT                 /product="Gypsy-76_DEl-I_2p"
FT                 /translation="HKHYCHNKTDGEPVYSKSYPHPTGVTEFVKQRLNNNP
FT                 TWVVDKKGTDQNGLKKKRLVIDFRKLNQKTVDDRYPIPAISTILSNMGKSK
FT                 FFTTLDLKSGFHQIELAERDREKTAFSINNGKYEFCRLPFGLKNAPSIFQR
FT                 LLMMFYGKKFQKHAMCMLMMIAVRPKKCSEHFSKAIDDVLREKISKTCYVY
FT                 VDDVIIFSQTKEDHVNDIHWVLEKLLEAGMRVSQEKSKFFKKNVEYLGFIV
FT                 SEGGLRTSPEKVKAIKEFPLPKTLFNLRSFLGLASYYRCFIKGFASIAGPL
FT                 TGILKGENGKVSKYQSRKIDIEMNKQQREAFHKLREILASEDVLLSYPDFT
FT                 KPFDLTTDASGLGLGAVLSQGGRPITMISRTLRDNEKNFATNERELLAIVW
FT                 SLKNLRNYLYGVKDLRIYTDHQPLTFAVSDKNPNAKLKRWKGIIDDHGAKV
FT                 IYKPGKENLVADALSRQNINVLQDTPESDAATIHSEESLSYTIDTTDNPVN
FT                 CFRNQIIIEEGDSSSVDNFILFKNKMRHIIKFSDRNSLINTIQDVINPEVV
FT                 NALLSPRPSFYSAMHCSLPVLAFIQHRIIELFPGTTFKYSKSFVQDITDKT
FT                 EQKEIIITEHNRAHRAAQENVKQILRDYFFPKMLRLSSEVTLNCRICSMAK
FT                 YSRHPTKQTVGQTPIPSCAGEILHIDIFSTDGNLFLTCIDKFSKFAIVQKI
FT                 ASRAIVDVKAPILNVVNFFPNTKTIYCDNERSLNSETIKSILLNNFNICIS
FT                 NAPPLHSTSNGQVERFHSTLAEIARCLKLENKLKRHYNDTTEIILLATNRY
FT                 NKTIHTVTNRKPIELIHSTPTEVEKEIQEKIQQAQDKSLDYVNKDRTXKNY
FT                 QVGDKVFLKANKRLGNKLSPLCSEETIEADLGTTVLIKGRVVHKDNLR"
XX
SQ   Sequence 6919 BP; 2437 A; 1487 C; 1308 G; 1662 T; 25 other;
     ggcgccctaa cgtgaaaata aaggaaccca ctaaaaaaga aaataataaa gaagttaata        60
     aaataaaaaa agagaagaga aaacggaagt ttaatcgaaa aaatcgcgcg aagttttatt       120
     ataccaatac ccgggaaatc ggacccctac caaaagtagg cagataataa aaaaaagtgt       180
     gaaaaaattc tagccaaaaa attgagccaa caaattttca aaaaattacc cctcgcccgc       240
     acgagaaatc agcagtcgtc gccatcagca gtcgcagccg cagtcgccgc cagcagtcgc       300
     agccgcagtc gccgtcagca gtcgcagtca cagttgmcgt cagcagtcgt tgccagcgca       360
     ccttttcacc cctcgccccg cacgagggat agcgatcgtg agcagcagtc accgcctgca       420
     accagccccc cgccccgctc gagggatagc aatcgtcagc agcagccgcc gctagcaacc       480
     agccccctcg ccccgctcga gggatcggaa tacaaaaagc tgcactaaca aaaaatgtaa       540
     gaaggatgtt tctgtcattc gcaaaatttt cagtagaaag cttaaataaa tataaaatat       600
     gaataaatgt ctgtgagtac aattctgcag gtagaaacaa aacttaaagt ttaaagaaca       660
     aatctttaga attttctgct gtctgtctac actgagagaa attattttct ccctaattaa       720
     aagtatttat ttaaaaatgc agtaaaataa ataaatcatt tgtaaaagct acactgggaa       780
     tatttttmct cctaaaattt cttgaaatwa atattwctca agattccttt aaataattaa       840
     acgatccaaa tacatttctt acctcaaagg gcataacaat ttgtttatta aaattaaaaa       900
     aaaaaacttt tttacktgtt taaactakta ttgcgtgtta aaccaacgta acaatacaaa       960
     caaaaaaaaa caatttaatg tttttccgtt ttttacccga aattattaaa cgggtttttc      1020
     tcgaaaatta aaaaggaagc tctaactcat gtacagaaac gacgacccta gctcgtcgga      1080
     ggatgaaata atagaagaac ataagcggtt attaacaagc aaagtaaata aggagaaaaa      1140
     aacsaggaag aggcctgcac cccatcgacc agtagaagtc aaattatatt aaaagaagtg      1200
     ttcttgaaag tcctgaacgg atagagaccc attcgcagga aatgcaggct gaacaaatcg      1260
     cgaacatgga sgcggcaata awcgcggcct tagaaagaca gcaagggctg ttsgatgaaa      1320
     aattaggtac catcatagga kaattggata ggctgaaagt aagagcccct aaagtcgaga      1380
     catttaagga aatcgttatc msaccagggg tagagtgtaa tgagccccta gacattatta      1440
     agtcggttcc gagtttgatg ggaaacaaga gtcgtacata tcctggagac aggcagccat      1500
     tgcggcctat aaggtatttg agccwtwtaa tggcagcagt cggcattatc aggcagtgkc      1560
     cattmtaaaa aataaagtta gaggtccggc mgcagctgta ttagctccgt ttaatacagt      1620
     gctgaacttt cacgccatct tggcacgtct cgatttcaca tacgcggaca aaactcaaac      1680
     gcatgtgatt cagcaagaac tgagcctgtc aagacaaggg gatctaccac ttcttaaata      1740
     ctacgatgag gtggagaaaa aattaacact cctaacaaat aaaatagtaa tgacacatga      1800
     tgcakcctca gcgtcggtat taaatgakaa atttagggaa gatgcacttc atgcgttcat      1860
     ttccggcttg aaaaaatcat taaaagtagc tgttttccca gcgcaaccgc gggatttacc      1920
     aacagcatta gctctagccc aagaggcgga atcaagtaac gatagaagca tatttgtggc      1980
     cagtttcgcc cgcgggccga ccaccttcgt ggaaaaattc ctcacaccag tcttattcct      2040
     ctaatcatga acaaaatcaa aatactgggg caataaaaaa aaaccctcac ttcaaaaaaa      2100
     atcwaaactg gagtaataat aaaactccct cttttaagca aaagccaagc ccctttttag      2160
     gaaatagtca ggtcaggccc ccaccggagc cgatggaggt tgatactctc tcgcaattca      2220
     aacaatccac aaattggcga aaagggcagt caacaaggag ccatcagaaa attaactacc      2280
     ttccagagga aaaactcacg ggggaagaat acgattccgt cgcccaagcg tatgctacgg      2340
     agattgaaga tgatttagat acagatkata cttgcaattt tttagaataa aatccctgct      2400
     cccgtacawt acacgaaggc tagcagggcg ggaagttaaa ctgttaattg ataccggaac      2460
     ttcaaaaaat tatattgcac ccctcccgat gttgaaaggc gtcgtgaatg tagaaacccc      2520
     gtttagtgtt aagtcaattc acggccacac acaaattaca aaaaagtgct taatttcaat      2580
     ttttcaagtt aagtctcatt tctttctctt aaatgctctt aaaggattcg acgggataat      2640
     cgggctcgat ttacttaaac aggtaaatgc gaaactcgat ttcacaaaaa atatattgca      2700
     agctggcaat gcaacagaaa agcttcaatt cacaaaatca gaaaacgtta atttcattaa      2760
     cattgatgat gaaagtgtcc cacatgcaat aaaacccgtt ttcgacaata tgattaaaaa      2820
     aaatgctaaa gccttcgctg acccagacga agctctacct tttaacataa acactactgc      2880
     cacaataaaa cagatgggga accggtgtac tccaagtcgt acccacaccc cacgggcgtg      2940
     acagaatttg tgaagcagag gttaaacaac aatccaactt gggtcgtgga caaaaagggc      3000
     accgaccaaa acgggttgaa aaagaagcga ttagttattg atttcagaaa attaaaccaa      3060
     aaaacagttg acgataggta tcctattccc gcgatttcta ccatattgtc aaatatgggc      3120
     aaatctaaat tttttacaac acttgatctt aaatcaggct tccaccagat agaactggcg      3180
     gaaagggata gggaaaaaac ggctttttca ataaataacg gtaaatatga attttgtaga      3240
     ttgccgttcg gcctaaaaaa tgctccgagc atttttcaaa ggctattgat gatgttttac      3300
     gggaaaaaat ttcaaaaaca tgctatgtgt atgttgatga tgtaataatt ttttctcaga      3360
     caaaggagga ccatgttaat gatattcact gggttctcga gaaactctta gaggcaggta      3420
     tgagggtgtc ccaagaaaaa tcaaagtttt ttaaaaaaaa cgttgaatat ttgggattca      3480
     tagtatcaga agggggcttg cgaacctcac ctgaaaaggt caaggctatc aaagaatttc      3540
     ctctaccaaa aaccctcttc aatctccgct cttttttggg gttagcgagt tattatagat      3600
     gctttattaa aggttttgca tcaatagcag gaccccttac aggaatacta aaaggagaaa      3660
     atggaaaagt aagcaagtat caatcgagga aaattgatat cgaaatgaat aaacaacaga      3720
     gggaagcatt tcataagtta agagaaatct tagcatcaga agatgtccta ctgtcatacc      3780
     ctgactttac gaagccgttt gatttaacaa cggacgcttc aggtctcggt ctaggggcgg      3840
     tattatccca agggggacgc cctattacca tgatatctcg cacgttacgt gataacgaaa      3900
     aaaacttcgc aacaaacgaa cgcgagctac ttgccatagt ctggtcccta aaaaacctcc      3960
     gcaactactt atacggagta aaagacttac gcatttatac tgatcaccag ccgttaacat      4020
     tcgctgtgtc ggataaaaac cccaatgcga aactaaaacg ctggaaagga attatcgacg      4080
     atcacggagc taaggtaatt tacaaaccag gcaaggaaaa ccttgtagca gacgcattgt      4140
     ctcgccaaaa tataaacgtc ttacaagaca caccagaatc ggacgcggct acgatacata      4200
     gcgaggaatc gctttcttac actattgaca cgaccgacaa cccggtcaac tgcttccgaa      4260
     atcaaattat aattgaggaa ggagacagtt cgtctgtaga caactttatt ttattcaaaa      4320
     acaaaatgag acacataata aagttctcgg accgcaatag tctgattaat acaattcaag      4380
     atgtaataaa cccagaggta gtaaatgcat tgctctctcc ccgtcctagc ttttattcag      4440
     cataggataa tcgagttatt cccaggcaca acatttaaat actcaaaaag ctttgtgcag      4500
     gacataacag ataaaaccga acaaaaggaa atcataatta ctgagcataa tagagcccac      4560
     cgtgctgctc aggaaaatgt aaaacaaatt ttacgggact atttttttcc aaaaatgcta      4620
     aggctatcat cggaggttac attaaattgt agaatctgtt ccatggccaa gtacagccgc      4680
     caccccacca aacagacggt cggccaaaca ccaataccct cttgcgcagg ggaaattctt      4740
     catatcgaca tattttcaac ggacggaaac ctttttctca catgcatcga caaattttcc      4800
     aaattcgcta tagtacaaaa aatagcctca agggccatcg ttgatgtaaa agctccaata      4860
     ttaaacgtag taaatttttt tccgaacaca aaaactattt actgtgacaa cgagaggtca      4920
     cttaactccg aaacgataaa atcaattcta cttaataatt ttaatatttg catctcaaat      4980
     gcaccccccc tgcacagcac ttcaaatggt caggtagaaa gattccatag cactctcgca      5040
     gaaatagcta ggtgcctgaa actggaaaat aaattaaaac gacactactg aaatcatttt      5100
     actggcaacc aacagataca ataaaactat tcacacagta acaaacagga aaccaataga      5160
     attaatacat tcgacaccca cagaagttga gaaagaaatc caagaaaaaa ttcaacaggc      5220
     acaggataag tctcttgact atgttaacaa ggacagaacc mataagaatt atcaggtggg      5280
     agacaaggtg ttcctaaagg caaataaacg cttgggaaat aaactctcac ctttgtgctc      5340
     agaagaaacc attgaagcag acctggggac cacggttctc attaaaggga gggtggtcca      5400
     taaggacaat ttacgataat gattatcatt aaattctaaa attacccttt catttttata      5460
     ttttttaggt ttaagaaata ctttttacta cttacactaa cagttgccat gacgaacgcg      5520
     acagtcaaac ttaacaacta tacgaacgcg gactacatcc ccatagtgga cggtgacatt      5580
     gtaatttggg atagttacgg atacctacga cattcaacga acttgacatc gtacgaggac      5640
     tatgcggacc agacagaagc aatgacaaag accttcacga acgatcacag gacgcaagta      5700
     ataaccactg acttaggtca cattcgcaaa ttagttgcta cccttaaagt ccaccacagg      5760
     gataatagga gcattaactt aatcggaaca gcacttaaag tcattgcagg aactcccgac      5820
     tttaatgatt gggagcaaat aaagtttaat caggaacaat tatttaacgc tgaagaagga      5880
     caatctgagt taaatattaa atttcaagaa cgtttaaatg cacttactaa ttctatgaat      5940
     caaattcaga aagtagacag agatgaagaa acccaccttt tagaaatcat tttagcaaaa      6000
     aacagaattg ttatcacaga cttagaaaat attttgatgg gcctaaccct agcgaaactt      6060
     aacatcgtaa gcccggctat cctggatagc agcgacataa gcgaattcaa agacaaacag      6120
     cctactaaca taagcttagt agaaatatta gaagtatata gcataagcgt ttttaaaaat      6180
     tcagaaataa tccactttct cattaaattc ccctactcta agctagtttg taaaaagata      6240
     acaatttacc cggttcagca ccacaacaag atcctagact tcgagaatgg agacctagtc      6300
     gccgattgcg cagcacgaat tgtcaacatc gggggctgca aagctacagt aggcgctacc      6360
     ttctgcaagg aacttcaagg cgacacatgc gcacaacaga tggtggccgg ggtgactgca      6420
     caatgctcca ccctaccagg tcacttgagt ccagttactg tagtggacca cggtaccctc      6480
     atcatcaacg acgcccaagt gaccatcatc gacgatctcg gtctaaaaca agagatatct      6540
     ggctcatacc ttgtaaccta ctctagcaag gtatcactaa acggctcctg gtacataaac      6600
     caacttggaa cttcaaggaa aaagcctgca gtctcagcca tgaccctggt aaacatmacc      6660
     gctcatcagg accgactcag cctcccgttc cttcacgagc tgagtctgag aaatctccac      6720
     cacattgggc ccttagagaa aaatttaccg cgggttcctt cctcagctac ttcttcgccc      6780
     tacttgcctc cttcctattg tgctctaccg tttggctagg ataccacgct ctaaggacca      6840
     gagaacaagg caacccaaga accaatggcg acgtagaatc agcaggtcac cgggacggcg      6900
     accacttaaa agagggagg                                                   6919
//
ID   Gypsy-76_DEl-LTR repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_DEl-I;
KW   Gypsy-76_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-407
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7069-7069 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 407 BP; 123 A; 102 C; 94 G; 87 T; 1 other;
     agttaacacg cscagttccc atgagcagaa tttgccgagt tgcaagccat atccggtggc        60
     caacacgcgc agcaaggaaa ctgccgaatc cacgattcag gtgccatcgc cccatcgcct       120
     gataccaggt gctgacccgg cgcattagcg gcagcgcagg gaacatgcgc tcagcgaatg       180
     atcgctggat accaagtgct gaccttgcat tttggtgaca gcgctgctag caggcaaagg       240
     cctcaagctg tggccggatc agaaccttaa gttagtctaa gtttggtact ccgcagccat       300
     agctgtgtta agataaccct ttataaattt atctaaccct ttgcctaaac aggcttggga       360
     gtaataaata aaaataaaca aaaatacaaa acgaacaaaa agtaatt                     407
//
ID   Gypsy-76_LMi-I repbase;    DNA;    INV; 4615 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-76_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4615
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 4615 BP; 1672 A; 724 C; 1000 G; 1218 T; 1 other;
     tggaatcccg cggggtacac ttgcagtacg tacattaaat atgaggcttg aaattagcgg        60
     gaactgtgaa cagtgaatca atgaaaaagt gaccgaccta cgcagatatt tacggtgttg       120
     cgtgtgaagt atgtgcataa taaataatcg cagagaaagt gatattgaaa gcagcaaagt       180
     gtcaatagtg agtgcgcggc gcacgggatt acgtcacatc tgtacgagaa cggcgggcgt       240
     actgtaacca gacagcaact gcgcagccac gcgcaccgcg gcacggggat atatggggca       300
     gcgttcggcg gagcagttac ggctgctggc cagcggtagc taaagcatcg gtggctacct       360
     acaacgagac ggcgcggcgc tcaaaccaac aggcaaggct gtcaacagag cagcgtggcg       420
     tggatcggca gtcaaaacaa aacaacggca gagtggagac cggcacagct gcgtccacga       480
     gagactacgg ctgcacacac gccggaagag aggctaggtg agttgacttg gcatttataa       540
     cttagcataa gtaaaataat ttcactgtag aacacaaagt aattagtatt attaataata       600
     taatcgttta aaagctaaaa agcaaatggc tagcgaagtg acaaaaaata ttctttgaga       660
     agcagagaac gaaattgtgc tcacaatact ggtaacgatc cattagatca gccacaacgg       720
     agcacacgga aaatgttagc ttaaattttg tcaatcagtc ttgtaaggca gatgataatg       780
     tagaaaacat tgtagatgaa aatgcagatt caagttctgc aagtggctct gacaatgtag       840
     atactataac taatcaaaac atagaactaa tcaatacaaa aatgtagatg atgccgctct       900
     taaccacaat gaagtggaaa atctgaatgc gagcgtcgga gacaatgaat ccgacgctgg       960
     catttcagat gagcaggcaa cagtattgag taaggtgaac catagaactg cctcagcaga      1020
     tactttgccg gtagaaaata ataaagaaaa agagattaac caagataaaa aataatggac      1080
     atgttccaaa tactgttaga tcatgtaaaa gaaaacacac acaaacaaga cgaaaacata      1140
     aaaagattag aaaacaaatt agaaaatggg ctaaaacaga cgtcagaaag gttaaatgaa      1200
     ataaatacac aaatggctaa catgaatcgt aagtttgagg ttttgcaaaa cagggcgaat      1260
     gccaataaag ctagatcagc agactgttgg cggaaaattg atcaggaaat actagaatgg      1320
     gacgaaaaat taaaaataga gaaatctgat gtcaatcacg aagttaatgt tcaagttaag      1380
     acaattaatg aaaacgkgca ggatcaagaa aatgctgtgt tattaattac tactaatgat      1440
     catacagaat tatctgcttg taaaggcaat acaaatacgc ttcagagtag attgtgcgaa      1500
     aatgagcaaa aagtaaaaga attacctgaa acgtgcagtg ttgctaaaga tttaagtaac      1560
     atagaaagtg tattgacgca aaagtttgaa acatggtagc acaagaaaga aggggacagt      1620
     caaagaaagt gattctgtaa atcacgcaaa tacttataaa tctaatcatt tttcaaacca      1680
     aggtaatgaa cacccagttg cttttgttca gcagtccaag gacactacac atgtacattt      1740
     cacaaagcaa caaaggaaaa ctagtggatc ttatcataga aaacattcca gtaaaatgaa      1800
     ttttggcacc tggaatgata tcattacaca agatggtagt tgacagtata ctaaacagag      1860
     tcaattcagt aaaaatggat caaacaaaag cactaaagga acatattcag gagtgcaagg      1920
     atgtcaagat attgataaac attgacttga cagcctgctt ctggaaggtt catttagtag      1980
     aaaatttcat gaatattttt cattcgtctg tgagcgacga aagtatcaat tcaggttttt      2040
     gaaagaggag caatcaaagg aacacacaac acagcagaca tcataaaaca ttatgtacga      2100
     aagaaaatac ctcagggggc gataacattc tttacatcgc taggtagctg acgcctacca      2160
     ggaacccgag ttaactaaca gcttacttcc tttcttttca cgctgttagt tcttccatct      2220
     tcatcattca gaactattat ctatcgtctt taaatttctt ctctatcaca cgaactggac      2280
     aacaaaacaa aagaaccgat ggtgacgtaa aatcaaaaga taaaaatcaa ccaaaagtgt      2340
     acacattgaa aataaacaca ggctcaagct taagacaaag tatacaagta taacacctac      2400
     acatagatca aaagccagta cagaacaaca acaacgaaca gacaccaggt aaaaagcaag      2460
     caacaaacgg tatttgaaac tttatctata atttatgata cattaataat ataagcagtg      2520
     aagctgaaga agaggagatt ttgcgaacga ggtaagtgga taagtaaatg aagtatggtt      2580
     ttagtaattg aggaggtaga tggtctgctc tttgtgtgag atgttaagga acaagggatc      2640
     attaggtgta acggaatatg agagaattta taagacgaca gtaagtcggc aaatttacgt      2700
     aagaaagtag tagcggtata taaggaggta taagtaagtc ggccaattat gtgaggtagg      2760
     tagctgtggt gagttgaagt ttctggcgac aagaagtcga ccaatttata tgatgaagtg      2820
     agagtggtag tagtgaagga ggtgctgaga atctttaggc gacggtaagt cggccaaact      2880
     tgcaagaaat aaagttgtag tattaaggcg acgtaagcgt cgaccctaaa aagctatgaa      2940
     gtggatcccc ttcctttcat tgaacactta gtagtagaaa tgttacctct gttattaaga      3000
     acgacaatat agaaatgttc acggttcagc agagtaaaaa tgaggttagt tgaagagtaa      3060
     agtaatgttt caattacatg aaatacaaca caacagataa aacattggtc acacataatt      3120
     ttttaatcgt taagaaacaa gaaacctggg tgtcgaataa agcaactggc tgtccattct      3180
     tatatgtact gggtattatt gatttttggt attaaaaacg ttcgcattct cgcaatatgc      3240
     gatgaaatgt atttgtatgc ctgtatgaaa atgaggtcat agaaccaagc aacagtaaag      3300
     aaaacgtgat gagaattact ctgcgtacag taaacgaaac ggcaggacgc caatatttca      3360
     gtaggctggg ccgcagcccc agctgacgct gtaaacatgg taggtggaag gggtagagca      3420
     ggtggtgcct gcgcacgcct gtaggcaagt aggtcaagct gaggcctgac cctgacaaca      3480
     caaacacaga tatgacaaca aacgtgaatg acttgtcaaa tgagtcaaca tttgtctcct      3540
     attatataca tatattgtat ttcattcacg aatcaacatt tagcatgtta ttaattttgg      3600
     tatttcattt atgtgtcgac acttatgctt atacaacatg cgatgaccga ttatgtactc      3660
     ttgtgtttta tgtatgtaat aatatttaaa actaacttga cattcttttt gaattattgt      3720
     gtgttcttgt atttcactta tgtattacat ggtaattttt gtatttatgt atgatgataa      3780
     aattttgtaa tatttaactt catgtaacat ctgtatattg ttatatgtaa cgcaacattt      3840
     cttgcactgt gaaatggtag acagattagg actgtccaaa ccacatgatt agtgcgacgt      3900
     cagtgttgtg cagcgagtgt ttgtgaaacg aatggcaaag aaagccaagt gatagtgaaa      3960
     aatattttta tttgaaagaa gtgatgtagg gtattcacta aaatttgaac ggcctagtgc      4020
     tgagtgtagt ggtttaaagt gtcaatatgt tgtggacggc aaagtgccga attttagtgg      4080
     tgtataccag aataaaattg ttgcggacgg caatgcgccg aattaagtgc aatcataaag      4140
     agtatatgga aagttttatt cggacgacgt atcgtcgagc aaatgcattt gagagtcatg      4200
     tgactctggt gataaataat tatctcaata actaacatgt taatgtggca ttctagccaa      4260
     aagacagcaa tgtgctgaca gtcatgttta tgtgtatata tgtatatgaa ttatgtttat      4320
     aagtatgttg aaacttgtgt acttatgtat gtagagtatg tttgtatgta ctaacgtaac      4380
     cattaattat ttctttgcag gaaagtagtt agtaatgtta acaactaaac agatagaaat      4440
     tttcataata ttttgcagat gtaaaaacaa attaaattca caggttaaaa ggacatagcg      4500
     aggcatttga gggatttaaa attctataaa tttgagaaca aaatttagat ttttccaaat      4560
     tgttagttgt cttcgagaac ctccaatttt ggaaaatgat agaaggaagg ggatg           4615
//
ID   Gypsy-76_LMi-LTR repbase;    DNA;    INV; 987 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-76_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-987
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (25-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 987 BP; 292 A; 210 C; 221 G; 264 T; 0 other;
     tgtaatattt ctggcttaaa gccatcatat taagatcgaa gtattgcttc agtgcagccg        60
     gttaggacca gtaggcgaca gatggtaaaa gctggtgaga accacgacag gtggtacaat       120
     aggtcgggtt ctcatgggaa agagcactgg caaatctccc cgaattctag ggaagtcccc       180
     gagcggcagg cactggacgc cgattggctg tagcactggc ggtcacgcgc caaaacgcaa       240
     tcatattttt attaatattt aataaactaa ttatttattc aatgtcaaac tcaatttaga       300
     aaaacccctc aaagctaagc tatgccctga gtaggtaaaa catattaaca attgctaatt       360
     caataaacaa aacaattaat ttaagacgga cgatgcacgg cagccatgtt tgcgcgccaa       420
     attgcggagc gaaggcagcc ttgcatcgag ccgccacact tcagttcaga acacgcactc       480
     ggaggagtaa catgtgattc agacacgcac tcggggagta acatgcatac gtaggcggtc       540
     ataagacatt gtttaatcat cttagatcaa gggaaatgac tttatattta ctttcagtta       600
     agacaatgtg tgtcaagtgg atgttattat gcagtttgct ggttttctgc agtctttaaa       660
     taaatcagat ggcatcccga tgtacctcag ttttattccg taattagatc agttcctgcc       720
     aatagtttag caatttcagc ctcattcaag aactccgacc tgcgtgctat catctgcgtg       780
     gggacatcta tagaagacgt caggttggtg aacttttaga gtttctactc ttcacacagt       840
     gcagtgggga gttactacaa ccctcgcgta cactgtcatt gcggtacaaa cgcaaactgt       900
     tgtgcgtcat ccatggcaac atggaggagg aaagaaaatg atataggacc ggttaacata       960
     ccccctgtag acatttttcc cgttgta                                           987
//
ID   Gypsy-77_AA-I repbase;    DNA;    INV; 5879 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_AA_;
KW   Gypsy-77_AA-LTR; Gypsy-77_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5879
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions  965312  959434.
XX
CC   Positions [4888-5367] - Integrase core
CC   'GGGGG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           797..2113
FT                 /product="Gypsy-77_AA-I_2p"
FT                 /translation="MNRLNELKALFDKEYSNVKKSKNNGKSLNLIQIKKKL
FT                 FADYIQEFKEILTLLRDSLETDLFNKLVNEYTQLKTKRDAAYMILDASSIL
FT                 PTNQKFKEIAHKVIEQEKLRKERLKNLTMDVKTIMNILQPYDGNAEGLDAF
FT                 IDGIQLAKELVKQEHLDTLLKLAKTRLTGKARSGLSPDINTIDGLVDDIKQ
FT                 RCKDSTTPETIIAQMKALKIKHNETPKEFCDSIEKCCAKLKTTYINHQIPP
FT                 AVADKMSTKVGIDSLISGINNPEIKLILKAGTFTNLAEAITKINENSLQQT
FT                 NQGTQILSFTSTGGQASRGNFRRGSRGGYRQSNNNRSYNQNHNSYTQNRYN
FT                 NNFRSRGNFQRYHQGSGNNFRGRRGNNRHVFSIQSGQPQPEMEQLQQLLPS
FT                 MVIGPVNHHQPQGLHPQAIPQLQQATYQQPNFFGQIQRGYLNSSL"
FT   CDS           3019..5718
FT                 /product="Gypsy-77_AA-I_1p"
FT                 /translation="MISDDIIEPSISNFNSPILLVPKKSEDNTKKWRLVVD
FT                 FRQLNKKILADKFPLPRIDSILDQLGRAKYFTTLDLMAGFHQIPLAEEARK
FT                 YTAFSSPDGHFQFKRLPFGLNISPNSFQRMMNIALAGLTPECAFVYIDDIV
FT                 VIGCSIDHHLNNLEQIFKRLRHYNLKLNPQKCKFFRTEVTYLGHKITDSGI
FT                 LPDDSKFQTIRDYPEPTNIDEVRRFVAFCNYYRKFVPNFAHIAKPLNNLLK
FT                 KGMTFSWNDERRRSFQSLKHHLLSPRILQYPDFSKDFILTTDASDVACGAI
FT                 LSQLHENGDLPIAFASKSFTKGEKSKPVIEKELTAIHWAIDYFKPYLYGRR
FT                 FKVRTDHRPLVYLFGMNKPTSKLTRMRLDLEEYEFDIEYLPGRANVGADAL
FT                 SRIPTKSEDLKSLVLVVNTRSMTKKQKQNNIPRRLEETSRGIDHLTVWRTE
FT                 NPSEVNKLLKISCVVHHNQLNIMVNNHNFKKILGTVTIPLTHNNGSRTLEF
FT                 ALLEISKLLKIYKRDKIALSEEDILFQYFSLQTIKEIANTAISSYQIIIFK
FT                 PPRFIHKQEEIREILTRHHTTPTGGHVGQHRLYLKLREIYKWKNMKFDIKN
FT                 FIKACEKCKINKIHRHTKEAQVVTTTPSKPFEVLSADTVGPFTRTNHGNRY
FT                 ILTIQCNLTKYVILIPIPTKEANVIAKALVKNFILIYGNFLELRTDQGTEY
FT                 RNEVLDQICQLLQVKQTFSTPYHPESIGALERNHRCLNEYLRSFTNAHQTD
FT                 WDEWIKFYAFTFNTTPHTEHNYTPYELIFGRKATLPHDLELNRPTLEPIYN
FT                 LEEYYNELKFKLQVTNKIAHQNLINKKEARQITLNNNTNPIDVKIGDHVYI
FT                 TNENRRKLDPFYIGPFRIIEVQDPNCVIENIQTCKQNIIHKNRIIKA"
XX
SQ   Sequence 5879 BP; 2279 A; 1072 C; 980 G; 1548 T; 0 other;
     tggcgaccgt gaggcagtcc ttagaataag taatcagtaa aagtttaaaa gtgcagtgta        60
     aaatgggcaa tacctcagat aaagaagaaa gctccaagac ggttggagat caaactgtga       120
     caatcgtcga aaatcaaaag gtacatactg gttttcatga aagccacgag tggaaactga       180
     atataatact agtgcttcta gtgatacaaa ctgcaattat ggttgtgaaa acgttagcgc       240
     tgatattaag aaaagctttt gctaaaaccg cagaacgagc cgtcgcagtg cacaacgtct       300
     agtgagcata cggtgcataa aaacttcgct acgcataaaa tcactgctac tagcacaaca       360
     gtgtggaatg gaacaaaaac attttttttc caaaaaaaaa aaacgaaccc atagcgcgcc       420
     gcagtgtaat cgacaaacag taaaacgatg aattcgcagt gtatggctgc cgaacacata       480
     agaacatggt gactaatatt aaaatttacg acggataccg ttagttaaat gaagactgat       540
     tgagttcaat gtgttgttag ggaacagtga gcaaaaaaaa aaaacgcaaa caagtaagca       600
     acatgatgtt gaggagtgcg cctccatcga gaagtaaaca acttgtatga tgcagcaagg       660
     tgcggaggag cgcgccattt tcacctagcc gatccgattt gcgtctccag accaaggaat       720
     gagagacaac acttagtcca aatgtgagta gtacataagt attttttttt ttattatacc       780
     gatataaaag cacccaatga acagacttaa tgaacttaaa gcattatttg acaaagaata       840
     ctcaaatgtt aagaagagta aaaataatgg aaagagtcta aatttaattc aaatcaaaaa       900
     gaagttattt gcagattaca ttcaagaatt taaagaaata ttgaccctac tcagagactc       960
     tttggagacc gacctattta acaaactagt aaacgaatac acacagttaa aaaccaaacg      1020
     agacgccgca tatatgatat tagatgctag ttcaatacta ccgacaaatc aaaaattcaa      1080
     ggaaatagcc cacaaagtta ttgaacaaga aaaattgagg aaagaaagac tgaaaaatct      1140
     gacaatggac gttaaaacta ttatgaacat tctccaacct tacgacggaa acgccgaagg      1200
     tttggacgct tttatagatg gtattcaatt agctaaagaa ttagtaaaac aagaacatct      1260
     cgatacatta ttgaaattag caaagacaag gctgactggt aaagctcgat caggactcag      1320
     cccagatata aacaccatag atggtttggt tgacgatatc aagcaaagat gcaaggattc      1380
     cacgacacca gaaaccataa tagcacaaat gaaagcgcta aaaatcaaac ataatgagac      1440
     tccaaaagaa ttttgcgaca gcattgaaaa atgctgcgct aaattaaaaa caacatacat      1500
     caaccaccaa attccacccg cagtagccga taaaatgtcg acgaaggttg gaattgacag      1560
     ccttatttct ggcataaaca atccagaaat taaattaatt ttaaaagctg gaacatttac      1620
     taatttggcg gaagccatca ccaaaattaa tgaaaacagt ctgcaacaaa ccaatcaagg      1680
     gacgcagata ttgtccttca ctagcactgg agggcaagca agccgaggaa attttagaag      1740
     aggatcaagg ggaggttaca gacaaagtaa caataatagg agttacaatc agaatcataa      1800
     ctcctatacc cagaacagat acaacaataa tttccgctcc agaggtaatt ttcagcgata      1860
     tcaccaagga tcaggaaata acttccgagg ccgacggggt aacaatcgtc acgtctttag      1920
     tatccaatct ggccaaccac agccagaaat ggaacaactg cagcaattgt tacctagtat      1980
     ggtcattggt ccagtaaatc accatcaacc acagggttta cacccacaag ctataccaca      2040
     attacagcaa gcaacctacc aacaaccaaa tttttttggt caaattcaga gagggtacct      2100
     aaattcctct ctatgaatct aaatgcatca aattatgtca cattaaaaac actaatgaca      2160
     aattgcaaat gttccttcat tgttgacagt ggagctgaca tttcaatttt caaaagtgaa      2220
     aagattttac caactcaaag gattgatgta aataaaacat ttaagataaa cggtataaca      2280
     agtaaaacta tccagacgat agctgagact gaaacatatt tgaccacaga agaaaattta      2340
     caacttgtac ataattttca aattgtacat agcgattttc caattcctac tgatggtata      2400
     cttggaagag actttttagt caagtataag tgtacaatta attatgaata ttggcttcta      2460
     aatatgacca taaataatca aacaatatca ttaccaatac aagataatac aaataacgca      2520
     tttactatac ctgctagatg cgaagtcatt agaaacgtac cggatttcta agtaacagag      2580
     gactctgtag tgttgtcaca ggaaatacaa ccaggtgttt tctgtgggaa cactatagta      2640
     tcaccgacct caaaatgtat taaatttgta aatacaacag aaaatcaagt aattataaga      2700
     aattttaaac caaaattaga tgcattaaaa aattatgata ggattactac aaatagtaat      2760
     acgaatttga atgataacat aagattacat gaactatact ctcaaataag tttagagcat      2820
     gtaccaattt ttgccaaaaa caaactcaca aacttgatca gaaagtatca agacgtgttt      2880
     tgtttaccaa atgaacattt aacaataaac aacttttacg aacaaaacat acatttacaa      2940
     aatcaatctg cagtttacat accaaactat aagcagatcc attctcaagc agatgagatc      3000
     gaaagccaaa ttcaaaaaat gatatcggat gacataattg aaccgtcgat atctaacttt      3060
     aattctccca ttctcctcgt accaaagaag tcggaggata acacaaagaa atggagatta      3120
     gttgttgatt ttcgacaact aaataagaaa atactggcag ataaatttcc attgccacgt      3180
     atagattcaa ttttagacca gctaggcagg gcaaagtact ttacgaccct tgaccttatg      3240
     gctggatttc atcaaattcc attagcggag gaagctagaa agtatacagc attttcttcc      3300
     cccgatggac attttcaatt taaaagatta ccattcgggt taaacatcag tccgaacagc      3360
     tttcagcgaa tgatgaatat cgctttagct ggactgacac ccgaatgtgc atttgtttat      3420
     attgatgaca tagttgtcat tggatgttca attgatcatc atttgaataa tctcgaacaa      3480
     atcttcaaaa gattgaggca ttacaattta aaactcaacc cacaaaaatg taagtttttc      3540
     aggaccgaag ttacttactt aggtcacaaa atcacggact ctggaatttt accggatgac      3600
     tctaaatttc aaacaattcg agattatcca gaaccaacaa atatagacga agtgcgtcga      3660
     tttgtagcgt tctgtaacta ttatcgcaaa ttcgttccga attttgcgca tatagcaaaa      3720
     cctttgaata atttattgaa aaaaggtatg acattttcat ggaacgatga aagaagacga      3780
     agtttccaat cactgaaaca tcacctcttg tcgcctagga ttcttcaata tcctgatttt      3840
     tctaaagatt ttattttaac aacagatgcg tcagatgttg cttgtggagc aattctgtca      3900
     caactgcatg agaacggcga tttaccaatt gcattcgcaa gcaagagttt tacaaaagga      3960
     gaaaaatcaa aacctgtaat tgaaaaagaa ttaactgcca ttcattgggc aattgactac      4020
     tttaaaccgt atctttatgg tcgaaggttt aaggttagaa cagaccacag accattggtt      4080
     tatttgtttg gcatgaataa acccacttct aagctcacga gaatgaggct tgatttagaa      4140
     gaatatgaat tcgacattga atatctccct ggaagagcaa atgttggagc agacgctctt      4200
     tccagaatac caacaaaatc agaagacctc aagtctttag tacttgtggt taacacacgc      4260
     tcaatgacaa aaaagcaaaa acagaacaat attcccagaa gattggaaga aaccagcaga      4320
     gggattgatc acctcactgt ttggcgtact gaaaatccgt ctgaagttaa taaattattg      4380
     aaaattagtt gtgtcgtgca ccacaatcaa ttgaatataa tggtaaataa tcataatttt      4440
     aagaaaattt taggtacagt aacaataccc ttaacacata ataatggaag tcgaactcta      4500
     gaattcgcac ttctagaaat ttccaaactt ttaaaaattt acaaaagaga caagatagcg      4560
     ctatcggaag aagatatatt atttcaatat ttttccctgc aaacaataaa ggaaatcgca      4620
     aatactgcca tttccagcta ccaaatcatt atttttaaac caccaaggtt tattcacaag      4680
     caggaagaga ttagagaaat cttgacgcgt caccatacga cccctacggg aggtcatgtt      4740
     ggccaacacc gtttatatct gaaattaaga gaaatttata aatggaaaaa tatgaaattt      4800
     gacattaaaa atttcataaa agcttgtgaa aaatgtaaaa ttaataaaat acatcgacac      4860
     acaaaagaag cgcaagttgt gacgacaact ccttctaagc cattcgaagt gctttctgca      4920
     gacacagttg gtccttttac acgaacaaat catggaaata gatatatcct tactattcaa      4980
     tgtaatttaa ccaagtatgt tattttgatt ccgataccaa caaaagaagc gaatgtgatc      5040
     gcaaaagcac tcgtcaaaaa ctttatatta atatacggaa actttttgga actacgtaca      5100
     gatcaaggaa ctgagtatcg taacgaagtt ctcgatcaaa tatgccaact tttgcaagtt      5160
     aaacagacat tttcaacccc atatcatcca gaatcaatag gtgcattgga gaggaatcat      5220
     agatgcctta atgagtacct acgatcattc accaatgcac accaaactga ttgggatgaa      5280
     tggataaaat tttacgcttt tactttcaac acaactccac ataccgagca caactatacc      5340
     ccatacgaac taatatttgg acgaaaagca acattaccac atgacttaga attaaacaga      5400
     ccgactttag aacctatcta taatttggaa gaatattaca atgaattaaa atttaaactc      5460
     caagttacga ataaaatagc acatcaaaat ctaataaaca aaaaggaagc aagacagatt      5520
     acattgaaca ataatacaaa tcctattgat gttaaaattg gagaccatgt ttacattaca      5580
     aacgaaaata gacgaaaatt agatcccttt tacataggtc cattcagaat aatagaagta      5640
     caagacccaa attgtgtaat tgaaaacatt caaacttgca aacaaaacat tatacacaaa      5700
     aatagaataa taaaagccta aagataaaaa cattcaagct aattataaaa acaaaaatat      5760
     aaatattgta aggaaagtct taagagtcac atttgttttt ctgattttca aaattacttg      5820
     ttgacaacaa tttacagaat gctttcactt tgttacacca ttcttctaaa gggggaagg       5879
//
ID   Gypsy-77_AA-LTR repbase;    DNA;    INV; 603 BP.
XX
AC   supercont1.255;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_AA_;
KW   Gypsy-77_AA-I; Gypsy-77_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-603
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.255; Positions  959433  958831.
XX
SQ   Sequence 603 BP; 183 A; 128 C; 99 G; 193 T; 0 other;
     tgtagtagaa tatttcccat gttttatcct gagaaacagt catctcagat ttactaattt        60
     acgagcagag aaacacagct ttctataaca tccataaact caaactcatg ttgtcatatg       120
     attccgcatg acaacagaac attcagaact tctcataaat aaccgtgacc gtaataaccg       180
     tcttccgtac atcaagtgcc ttccgtactg gttgtaccca aagacatcaa ttttggatat       240
     ttttttttac cattcgtttt cctttacgca tgcataataa tgcaggccaa gaaacaatta       300
     atacttttca cagcgttgac aaaaatgcca aatggcctag atctttcctt tacgttttcg       360
     gctaccttcg tcttttacga cgactgtgtt atgcttagcg agttaccacc actcatgcta       420
     tttgaacgtg attggttaac tctgcgtgga gactcttagc ccacccctag aatagttaaa       480
     tcatgtgtag agttaagtta cgtagaagta gatttggaaa ataaagtcag atcgtttcgg       540
     actgttacac gaacctgagt gtttcttgaa gatatcacag ttcatgatat caaaactatt       600
     aca                                                                     603
//
ID   Gypsy-77_CQ-I repbase;    DNA;    INV; 5064 BP.
XX
AC   AAWU01044424;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_CQ_;
KW   Gypsy-77_CQ-LTR; Gypsy-77_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5064
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 533-533 (2011).
XX
DR   Genome; AAWU01044424; Positions   13534    8471.
XX
CC   Positions [3857-4327] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           800..4894
FT                 /product="Gypsy-77_CQ-I_1p"
FT                 /translation="MPLTGTTDPYLPGSIHFHQYLEQLEWVFQHNKLAAND
FT                 YKISFLAVCGQEVYTMLKKLFPGEDFKELSYAQLTDKLKKHYDKSDSEVIH
FT                 SFKFWSRKQGQHEKAEDFILSVKVLAERCCFGDFKDRAVRDLLVMGVYDRS
FT                 LQKRLFDEENLTAEKAERIILNQELSTNRTRILNNDGDRGSLVNRLGRRPE
FT                 RTPRRVGFRNRSRSYSKNRSFSSDRNSGKPVFECSFCKRTGHTRKFCFKLN
FT                 KSPRKQKHSVKFIDSTPANSASSGLFKRLKKDLSDDDDMPCLMISSVNKVN
FT                 EPCYVEAVIEKRRLTMEVDCGSAESVISEELFNRNFKNLVVKPCNKRLVVI
FT                 DGKRLTVLGKVSVHVILEGVQQQLDFIILRCEVDFIPLMGRTWLDVFYGNW
FT                 RSTFAKPTLPTQRVNAVENDQVVVDLKSKFSTVFDKDFSSPIKGFVGDLVL
FT                 KHNTPIFKKAYDVPLRLRQRVLDYLDYLEKDGIITPVEASEWASPVVIIIK
FT                 KDQSIRLVIDCKVSINKVIVPNTYPLPLAQDLFAALSGSKVFCALDLAGAY
FT                 TQLLLSDKSREIMVINTIKGLYIYNRLPQGASSSASIFQKIMDMILHGIPG
FT                 VFCYLDDVLIAGDNYEDCRDKLYLVLERLAKANIKVNLKKCNFFVNRLPYL
FT                 GHILTDQGLLPCPDKVETIREAKAPRNVSELKAFLGLVTFYSKFIPNLSPR
FT                 LHTLYNLLKKNVNFVWSQECNKVFNDCKQFLLKPNVLEYFDPDKPIVVVTD
FT                 ACSYGIGGVIAHEVNGEEKPISFTSFTLNNAEKNYPILHLEALAVVSTVKK
FT                 FHKFLYGKDFKIFTDHKPLIAIFGKEGRNSISVTRLQRYVHEMSIYEYEIF
FT                 YRPASKMGNADFCSRFPLAQEVPRELSFDFVKNLNFSQEFPIDFKQIAKFT
FT                 SKDEVILTIIKYMREGWPERMEKRFRDIYSLHRDLEEVDGCVLFQDRVIIP
FT                 EAMKDQILKLLHKNHSGISKIKQLARRSVYWYGMNGDIEEFVKACRVCHQT
FT                 TSVTKKSPYSQWTPTTKPFSRIHADFFYFERKVFLVIIDSYTKWIELEYMR
FT                 HGTDHRKVIKVFIGVFARFGLPDVLVTDGGPPFNAEAFVSFFEKQGIKVLK
FT                 SPPYHPESNGQAERSVRLVKDVFKKFLLDPDIRGLDTDEQICNFLFNYRNT
FT                 CLSKTHKFPSERMLSFKPKTLLDLINPKTNFKHNLTESQNSNPIDKHDDSL
FT                 AETFTNLKNGDLIYYKNINPTDTRRWLPAKFLMHLSTNVLQISLGGRVLSA
FT                 HKRQIKIPSQPRKNTPHFVFHGEQVLSPQHAPHTSNKRSREDAFEDSDAES
FT                 DFYGFAADSSIFEESVPTSSRPEPVRQDAERVLPVRRSARQIKKKTKVDFK
FT                 YY"
XX
SQ   Sequence 5064 BP; 1486 A; 891 C; 1128 G; 1559 T; 0 other;
     ataaagtaag ttaatttaac tggcgacgag tgataaaatt tcggagtttt cgcgttattt        60
     ggtgcctcgc gtgtgaaatt tggcgagtga aattatcgca agcagtattt tgggcagtga       120
     ttttttttta agaaaccagc ggagttcatt ttttgtggtg cacatacatt tgcacgtttg       180
     attggcacat attgttttgc tgtaaatttt aaagcccact gataattatt actgcagtgt       240
     tcagtcgttt aaaaatataa aaaaattgag aacaaacgtt taacaaagaa agggcttgag       300
     gtgacgccaa ccaggcgcca ttttgtagca tttcttcatt tcgcctccac aaaggagagg       360
     aagatttatt cttcttttat gctttgtgtt tttttagcgt tggctttgtt cgctgttgag       420
     gaaagttctt ctcaaccagt gatttgacac acacacaaac acacgtgtgt gagaagcttt       480
     agtgagcagc ggctgaaaag cgagcggcgg ctgaaaggtg agcagcggct gagaagtgag       540
     cagcagtttc gcgtgaaagt gagcatcagc ggcggcgaag cagtcggggc acggtgcagt       600
     gttgcggagt ttacggtttt gcgagacatt ttggattttg atttttcctc cgtctggtga       660
     cgtcgagtag attttgattt tgactaccga ccaaggagaa taaggtacgt gatttgtttt       720
     ctgttttgtt ttgagattat tttgggtgat tttttttgtg atatattgtt tttttttgtg       780
     tcattatttt tgattaagga tgcctttgac gggtacgact gatccgtatt tgcctggttc       840
     aattcatttc caccaatacc tagaacagct tgaatgggta tttcagcata ataagctggc       900
     tgcaaatgat tacaaaattt cgttccttgc tgtctgtgga caggaagttt ataccatgct       960
     taaaaaactt tttccggggg aagattttaa ggaattaagt tacgctcaac tcacagacaa      1020
     acttaaaaag cactatgaca agagtgactc ggaggtcatt cacagtttta aattttggtc      1080
     tcgcaagcag ggacaacatg aaaaagcaga agattttatt ctttctgtga aagttttggc      1140
     tgaaagatgc tgttttggtg attttaaaga cagagctgtg agagatcttt tagtcatggg      1200
     tgtttatgat cgttctttac aaaagcgttt gtttgatgag gaaaatttga cagctgaaaa      1260
     ggcggagagg atcattttga accaggagtt gtccactaac agaaccagaa ttttgaacaa      1320
     cgatggtgat cgtggaagtt tggtgaaccg tttaggacga aggcctgagc gaactcccag      1380
     gagggttggt ttcaggaaca gaagtaggag ctatagtaaa aatcgttcgt tttcgtctga      1440
     cagaaattct ggcaagcctg tttttgaatg ttcgttttgt aaacgaacag gacacaccag      1500
     aaagttttgt ttcaagctta acaaaagtcc tcgtaaacaa aaacatagtg taaagttcat      1560
     tgattcgaca cctgctaatt cagctagttc agggctattc aaacgtttga agaaggattt      1620
     gagtgatgat gacgacatgc cctgtttgat gatttcttcg gtgaacaaag tcaatgaacc      1680
     ttgctacgtc gaagctgtca tcgagaagcg acggctgacc atggaggtcg attgtggttc      1740
     agcagagagc gttatttccg aggaattatt caacaggaac ttcaagaatc tggtggtgaa      1800
     accctgcaac aagcgattgg tggtcattga cgggaagcgt ttgaccgttt tggggaaagt      1860
     ttcggtgcat gtcatcctgg aaggtgttca acaacagtta gacttcatca tcttgcgctg      1920
     tgaggttgat ttcatccctc tgatgggtcg cacctggttg gatgtcttct atgggaattg      1980
     gagatcaact tttgctaaac cgactttgcc tacgcaacga gtcaatgcag tggagaatga      2040
     ccaggttgtt gttgatttga aaagtaagtt ttctacagta tttgacaagg atttttcaag      2100
     tccaataaag ggttttgtag gagatttggt tttgaaacat aacacaccta ttttcaaaaa      2160
     agcgtacgat gttcctttac gtttgcgaca gagagttttg gattatcttg attacttgga      2220
     gaaagacggc attattacac ctgtggaagc ctctgaatgg gcctcacctg tggtgatcat      2280
     tatcaagaaa gatcagagta ttaggttggt catagactgt aaggtctcaa tcaacaaagt      2340
     gattgttcct aatacttatc cacttccact ggcacaagat ctttttgctg cgctttctgg      2400
     atccaaagtt ttttgtgcac ttgatttggc aggtgcatac acacaacttt tactttctga      2460
     caaatcaagg gaaattatgg tcataaatac tatcaaaggt ctttacattt acaacagatt      2520
     gccacaagga gcttcctcga gcgcatctat tttccaaaag attatggaca tgattttgca      2580
     cggaattccc ggtgtttttt gctacctgga cgacgttttg atagcaggag ataattatga      2640
     agactgcaga gacaaacttt atttagtctt ggagagatta gctaaggcta atataaaagt      2700
     gaatttaaaa aaatgcaatt tttttgtaaa tcgtttgcca tatctgggac acattttgac      2760
     agatcaaggt ctgctcccat gtccagataa agttgaaact attcgcgaag cgaaagctcc      2820
     acgaaatgtt tcagaactta aggctttttt gggattggta acattttatt ccaaatttat      2880
     tcccaattta tctcctcgat tacacaccct gtacaatctt ttgaaaaaga acgtcaactt      2940
     cgtttggtcc caggaatgca acaaggtctt caatgattgc aagcagtttt tgttgaaacc      3000
     taatgttttg gaatattttg accctgacaa gcccattgtt gtggtcactg atgcttgctc      3060
     gtatggaatt gggggagtga ttgcacatga agtgaatggg gaagaaaaac ctatcagctt      3120
     tacttctttt accttgaaca atgcagaaaa aaactacccc attctacacc ttgaagcttt      3180
     ggctgttgtg agcactgtaa aaaaatttca taaatttttg tatggcaaag attttaagat      3240
     ttttactgac cataagcctt tgatcgctat ttttggaaaa gagggacgaa attcaatttc      3300
     tgtaacccgt ttgcagcgat acgttcatga gatgtcaatt tatgaatatg aaattttcta      3360
     tcgccctgcg tcaaaaatgg gaaatgctga cttttgctca aggtttcctt tggctcaaga      3420
     agtccctaga gagttgtctt ttgattttgt caaaaatttg aattttagcc aggagtttcc      3480
     aatcgatttc aagcagatcg cgaagtttac cagcaaagat gaggttattt tgacaattat      3540
     aaaatacatg cgtgagggtt ggcctgagcg tatggagaaa cgtttcagag acatttactc      3600
     tttgcatcgc gatctagaag aagtcgatgg ttgtgtgctg tttcaggatc gggtaatcat      3660
     ccccgaagcc atgaaagatc aaattttgaa acttttacac aaaaatcatt ccggcatcag      3720
     caagatcaag caactcgcga gaaggtcggt atattggtat ggcatgaacg gtgatattga      3780
     ggagtttgtc aaggcctgca gagtgtgtca tcaaacaaca tcagtgacta agaaatcgcc      3840
     gtactcacaa tggacaccta caacgaaacc attcagcagg attcatgcag atttttttta      3900
     tttcgaaagg aaggtttttc tagtcatcat tgatagttac accaagtgga tcgagctgga      3960
     gtacatgaga cacggtaccg atcacaggaa ggtaataaaa gtgtttatcg gtgtttttgc      4020
     caggttcggg ttgccagacg tgttggtgac tgatggtggt ccaccgttta atgcagaagc      4080
     ttttgtcagt ttctttgaga agcaagggat caaagtgctg aaaagcccac catatcatcc      4140
     tgagagcaat gggcaagctg aaagatcagt tcgtttggtg aaagatgttt tcaagaaatt      4200
     cctcctagat ccagacataa gaggattgga taccgatgag caaatttgca attttctctt      4260
     taactacagg aacacatgct taagtaaaac acacaaattt ccctcagaac gaatgctatc      4320
     cttcaaacca aaaactttat tggatttgat taaccctaaa accaatttta agcacaactt      4380
     gacagaatca caaaactcta acccaattga caagcatgat gatagtctag cagaaacatt      4440
     cactaatctc aagaatggag acctgattta ctacaaaaac attaacccta ctgacactag      4500
     aagatggttg ccagccaagt ttttaatgca cctttctacg aatgttttac agatatcact      4560
     tggtggtaga gtgctttcgg cgcacaaacg ccagatcaaa atcccctcgc aacctcgcaa      4620
     gaacacaccg cattttgtgt tccatggcga gcaagttttg tcaccgcaac atgcaccgca      4680
     cacaagtaac aaacgaagcc gagaagatgc atttgaagat tctgatgcag aatcagattt      4740
     ttatggattt gctgctgatt cgtcgatttt cgaggaatct gttccgacgt catcgaggcc      4800
     ggaacctgta cgacaggatg ctgaacgagt tttaccggtt cgtcgatcgg cgagacaaat      4860
     taagaagaaa acaaaagtgg atttcaagta ctattaggag aatttttgaa ttttaaaacg      4920
     tttagctcta aatgtagaat atttgttaaa agttgaattt tgtggaatat tattccaatc      4980
     gattttgtgt tagctaaaca agcttatctg aaattaggat tttttcaaat tgtttgtttt      5040
     caaacctttt aaaggataaa ggac                                             5064
//
ID   Gypsy-77_CQ-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   AAWU01044424;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_CQ_;
KW   Gypsy-77_CQ-I; Gypsy-77_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 534-534 (2011).
XX
DR   Genome; AAWU01044424; Positions    8470    8286.
XX
SQ   Sequence 185 BP; 51 A; 48 C; 27 G; 59 T; 0 other;
     tgtagtatcc acgatcagag tgtaaaactg ttatacgcaa agaattctct cagagagagt        60
     acctctcttt acccaactgt actttgaatc tgaaatacat cgttcttctt cgtttgacca       120
     cgcacgcgac tggacgtctt ttttattacc acctccgaca ccgacttata actttacatt       180
     atcca                                                                   185
//
ID   Gypsy-77_DEl-I repbase;    DNA;    INV; 6703 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_DEl-I;
KW   Gypsy-77_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6703
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7038-7038 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 6703 BP; 1982 A; 1619 C; 1439 G; 1629 T; 34 other;
     ggcgctcaac gttgtaaaac ccatcgcgga aaaaataggg accatgtaag tgagctaaac        60
     cagacacaca tccaccccta catctgcatt tgtttcattt aattcatcta cactgcaaga       120
     gagcatctgc agatccatta ttaatactat ttattaatat tataattaaa tctctcataa       180
     attgattgac gttacattac gaaaaattta tatattattt gaatatataa ttaatggtca       240
     ctatatattt gcgtgttgtt tgcatattat ttttttctgt gtaaataaaa attttggtga       300
     ttattatttt attgtgaggt tttaatatct gagccgaggc tcctataatt taatacatac       360
     aattcgaatt gttaccgggt ataaattatt tgaaaattaa taaacccagt ctgattgctc       420
     tttgtttttt tgtggacatc taattcagtt tttatatatc gctttgctca aataaaaatt       480
     cttggtatta gcctcgcagt ccagtttctt ttttattgtc cccactccac cgcagcgaac       540
     ccgatacagc ggcgtatgca tttgtttggc aatttattat tcttcacttc tttgtttatc       600
     gtagcagagg ctcagtcccc acaaggcggc agctcagttc gacgagctca catacatcgt       660
     tgctaaggcg gcggctcctc cccgcatacc ccttgccatg ccaactgcca ccatgggcaa       720
     aatagcttga gcaggcactt ccttaccagt acattttaac cttaccacat atgagctctc       780
     cgttcctaca gtatagggaa aataaacgtt acgctagcga ctcagagtct gagagtgaag       840
     agcccccgcg tacttccacc ccgatacggg cacccgataa ccccccttcg gtaggaatta       900
     tggacccaga acagcttaaa gccgtaatcc aggccgccgt taaccatgcc ctagcggaag       960
     cggccggcga atccaggcgc agggaggagg aaatgcgcca aaccatacag cagttggccg      1020
     ctcaagttgc agcggtgcaa attgcgcccg cacaggcggc agttcctaca atcaaaattt      1080
     atacacccat cgacatcaca ggcgatgttc aatgcaacga gcccctagat gccgttaaat      1140
     gcctgcccga atttacgggg gcacaagaga catacgtctc ttggcggcaa gcggcagtag      1200
     ccgcatattt tatatttaaa aattatgtaa acagctcacg ccactaccag gcggttgtta      1260
     taattaggag taaaataaga ggccctgccg acgcagtgct gtcctcattt ggcactgtgc      1320
     taaatttcga tgcgatcata gaccgtctcg atttcacgta cagtgacaag cgccagattc      1380
     acgtcatcga gcaggagatg ggtaccctta gacagggaag cctcacactt ctacaatact      1440
     atgacgaggt tgagaaaaag ctcaccttgc ttacaaacaa agcaaccatg tcgtacgaag      1500
     cgtcgactgc aagaatttta tgcggaaaat tccgagatga tgcgctccgt gtatttgttt      1560
     cgggcctcaa gcgcactctc tccgatgtcc tcttctcggc aaagccgaaa gacatgccga      1620
     ctgcgttggc attggctcaa gaagtggaat caaaacatga aagatacatt ttcgcaacat      1680
     cgtttgcaaa gagcgtggag gatagggata agaagcagtt tccaaagccg tcagaacgcc      1740
     aacaagcttc ctatcaagcg cacccccaag gaagtgcggg caaaaaccca cacttcacta      1800
     agcaacacaa ggctcaggtg cactccgctc caaataacga gagacgttgg gaaaacacgc      1860
     cggaaccaat ggaggttgac ccatcccttt ctcgatgtag acaaccgacc caaacacagg      1920
     ctaaccaaaa tgggaagcca gctatgtccg gccgttcagg ccccgctaaa agacaaaggg      1980
     ttaaccacgt cgcgcagagc gcaggcgaaa cagaagataa gtaaacagct acagcctcga      2040
     gcgcggctca ggaaattaat gacgacgcca ttcatgaata tgattcggac gttattaatt      2100
     ttttagggga aaatccctgc tacccgtcat cagacgaaga gtagcggggg taaatatgag      2160
     tcttttaata gatacgggcg cgtcaaaaaa tttcatccgt ccctacgaag gactgaaaag      2220
     cgtcccggtc gaatccccct tcagaattca ttccattcac ggcgtcacca caatcacgaa      2280
     gaaatgcttc gtatcacttt tcaatttgaa ggccacgttc ttcatcttac ccgacttgtc      2340
     ttccttcgat gctatcatcg gccttgacct acttaacagg cgggggcatc actgtgtctg      2400
     gcctccggcc atctcaaatg gggcaacaaa gaagagaaaa ttgatttcca atcgtgcccc      2460
     gatgtcaatt tcactgaagt tgactgctca gatgcaccag ctttagtcag aaaaactttt      2520
     ttgaaaatgc tccgcgacag gaaaaaggcc ttcgmggatc ccaatgaggc cttaccttac      2580
     aacacttcgg tggtagccac catcagaacg gttgatgagg agcccattta twccaagcwc      2640
     tacccatacc caatggsagc agctgacttc gtcaatggtg aaattcagga gctgttaaaa      2700
     aatggmataa twcagaagtc gaaatccccc tacaataacc caatatgggt agtaaacaaa      2760
     aagggcaccg acgagaatgg caatcgtaaa atgcgacttg tattggactt tcgaaaattg      2820
     macgaaagga caattcctga tcgctacccm atgccaaata tctctatgat wttggggaat      2880
     ttakgaamgg ccaaatactt cacaacactt gatttaaagt ctggctatca ccagatcacg      2940
     cttgcagaac gsgaccgtga aaaaacttcc ttttccgtta acggaggaaa gtacgaattg      3000
     gackmmagaa tgcggccagc attttccaaa gmactawtga cgacatactg cgagagcaga      3060
     tcggwaaatt ctgttwtgtt tatgttgatg atgttatagt cttctcagag katgaaaact      3120
     cccacgtcca gcacgtagat tgggttctca agagccttta cgatgctwat atgaggatat      3180
     caatgcaaaa atcacggttt ttcaaaagga gcgttagcct tttgggcgtk attgcmacca      3240
     acaacggtgc aactaccgac ccagaaaaag tcaaggccat tcaggaattt ccggaaccta      3300
     aaaacatatt csaggttaga tcattccttg gcctggccag ctattacaga tgctttatta      3360
     awgattttgc gtcaatagct aggcccatct ccgacattct taagggagaa aatggaagcg      3420
     tcagcagaca taggtccaat atccaagtgc attttagtga acagcaacga attgctttcc      3480
     aaaaattgcg caatattctg gcttcagagg atgtcatcct cagatacmca gattataaaa      3540
     aggcattcgg tctaacgacg gatgcctcgg catttggcat tggtgcggtg ctatcccagg      3600
     agggamgacc tattacaatg atctcgagaa ctctaaaaga ccgagagatt aattacgcta      3660
     ctatctacac tgatcaccag ccgttaacct tcgcggtatc agagtctaat ccgaatgcga      3720
     aaattaaacg atggcaagct cgcatcgacg agagcggcgc caaaatgttt tataagcccg      3780
     gcaaagaaaa tctcgtcgcg gatcccctct ccagacagca acttaacgtt gtggagcagg      3840
     aagaagccaa tttgtgtgcg gccactatcc acagtgaaat gtcgctcaca cacaccatcg      3900
     aatccacgga caagcctttg aattgctttc agaaccagat aactctggag gaagcacgct      3960
     ttccgtctaa acccagcttc gtcctctttg gaaacaagag gcggcatgcg attatctttt      4020
     cctgtaaaga gtcattactt gatgagctcg cagacataat cgttcctaag ggcgtaaacg      4080
     ccattcattg tgacttgcac acactggcaa tgatacagaa cgcaaattgg ttcagcaatt      4140
     tccagccacc aaattttggc attgcaaaaa ccgtgtaacg gatatttttg cagttcctga      4200
     aagacgggaa atcctcaccg tcgagcacaa tagggctcac agatcggccc aagaaaatgt      4260
     taagcactcc gagtactact tcccgaaaat gaccaagtta gcgaatgaaa tcgtcactaa      4320
     ctgtaagacc tgcgctaaag caaagtatga caggcatcca aagaagcatg aactcggcga      4380
     aacgccagtc ccatcgcaag tgggggaaat gctacacata gacattttct ctacagacag      4440
     gaaatacttc ctcacatgca ttgacaaatt ttcaaaattt gcaatggtcc aaccgattcc      4500
     ctctagaaca atagaggatc tcaaaccggc gctattacaa ctcctgaacg tcttccccaa      4560
     agccaaggtc atctactgtg acaatgaacc ctcgttgaac tcacacacca tcatgaccat      4620
     gctggaaaat cacttcggag ttagcatctc gaatgcaccg cctctccaca gtgtctcaaa      4680
     cggccaagtg gagcgtttcc acagcactct ggtggagctt gcccgatgcc tcagagtcga      4740
     caaaggcatc agcgacaccg tagagttgat tttactggcc acgactagat acaacaagtc      4800
     tatccattcg gtcatcaata agaggcccgc cgacgtggta gtcacacaat cgactgaccc      4860
     acagtgcgac atagaggata gactaaggca tgcccaaaat aggctaagag atagggaaaa      4920
     tgcctcccga caaaacagag tgttcaatgt cggcgacaaa gtcctagtga aatccaacag      4980
     gagactaggc aacaagcttt cgscgttatg cgaagaaaaa acggtggaag cggacatggg      5040
     gaccacagtc ctcattaagg ggagggtggt ccacaaggaa accttaggta ggccaagctt      5100
     cgccagcctg atagtttttt ccgtattttt cattacttta ccgctakcca tttggcataa      5160
     gtttttcatc attattaatt ttaatcacgc tttattcttt atgctttggt ggtgggctac      5220
     cccattagtt caaacaatta caatgtattc aaattacagg ttcatacccc tgcttttcct      5280
     tcttgccgca acatcggmac gtgtcacgga ctactctaaa gctaagtaca ttcccattgt      5340
     cgatggtcga atcttagtat gggaggaatt cgcgtatgta aaacattcgg caaacctctc      5400
     tgaatatagg cgcgttatag tagaaacgga ggggatgacc agcatgttcc cccagtcgca      5460
     tatgcaaaaa cttttgagcg ttgacatcgc tcacctaagc gacctgctcg aatctctgag      5520
     cattcamcat agagtagccc gaagcctaga cttcttaggg acagcattga aggtagtggc      5580
     gggaacgcca gatgcagaag attttgaaaw gattaaattt aacgaattcc aactaaataa      5640
     cgcaaacaat aggcaaataa atatcaacaa caaggttcag gaccaaatca atagaatttc      5700
     saacaccgtc aatcaaattc tgaggtcggc taaacagtcc caaatcgaca cgggacatct      5760
     attcgaaacg ttattaactc gaaatagaat gatgacaatg gagttgcaga atcttatgct      5820
     tgctgtagct cttgccaagg tcaacatagt aagccctagc atattagatc atgcagacct      5880
     ggagaatgtg tggttggaag agcccaccga gactgcgatt aaagatgttt tgtccgtagc      5940
     gtccgtaaaa atcttacaat ccgctaacat tttacacttc attattaaat ttcctaagat      6000
     caaatcagcc tgcaataaaa taactatttt tcccgtgtmg catcacgaca ccgtactcat      6060
     actggaggat agcgtaatag cggaatgtaa cggggagatc catgcggtga agaattgctc      6120
     cacaacacca ggagttacct tctgccagct ggcgctaaga agatcgtgcg cccaggagct      6180
     ccatgctgga ggcactgcgc actgtgaaat ccagcaaagt aacctgcatc ccgtcaccta      6240
     cgttgacgat gggattatca ttgtaaacga tcgcccggcg cgtgtgagtg tggcaatggc      6300
     gctcacgccc acttacgagg caccttcctc atcaccttta actattgtgc cacgatcaac      6360
     gaaacccgat acgttaatta tgacgtagcc cagaagaggg ttacaggaat agccagctct      6420
     ccttccttga atatcaccat ggagcgcaac gtgctcagcc ttccttacct tcatcgtttg      6480
     ggtgagcgta atctggaacg catcgaaaac ttcgggaaga ggatcaacga ctatcgatca      6540
     caccagatag ttctaattgc tggagcaata tgctgcgcat tgatctgtat tggccttact      6600
     tatcggcgag tcacccaggc cagaaaaact gcggtccaac aaagggaggt gatcgcccaa      6660
     atagggtcgg ccgagggcgg cctcattcct gaggagggag tag                        6703
//
ID   Gypsy-77_DEl-LTR repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_DEl-I;
KW   Gypsy-77_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-468
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7070-7070 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. AG-TT termini.
XX
SQ   Sequence 468 BP; 136 A; 130 C; 103 G; 99 T; 0 other;
     agttaactaa gttaaccggg cgacggcaat gaccgatcgt ccgaagcctc gctccggcca        60
     aactgctgac acagcgtctg gccggaagct cgtgcatagc cggcaagcac tgcccattgg       120
     agtggccgct atgagtctct ttctttgtta gccttaagtt cagttctgat ttaaatccaa       180
     taaagagcac atcgctcgta aaaaaactcc ggcaaccgcc gttaaacaat ttattatttg       240
     aacactgact gagtctctag gccagcagtg aacggagggc agttaccctt ccagcgtaat       300
     cgtcataact cttcagtgga caaaagctga ccgtcggcca accggccacc tacctacagg       360
     agctacgcgg aatccaccat cctcatacca acgtaaatcg accaaacggg cgatcaacaa       420
     cgggactgca gcgagggaat aactgctata aaccaataat aactaatt                    468
//
ID   Gypsy-77_LMi-I repbase;    DNA;    INV; 4413 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-77_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4413
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(76..471,475..1794,1722..2570,2426..2764,
FT                 2709..3251,3128..3355,3359..4354)
FT                 /product="Gypsy-77_LMi-I_1p"
FT                 /translation="MTETALAEVLAGXLNVRRLSTQRCKTRIAFFATALET
FT                 QTQVLQSLASAMSGPPRPTGSXTSSSVSYPPPFPAYDEDCGRVGGLRKTIA
FT                 ATLSGVWSSGCPSLSGPIPLMGFPQDLSIAVSTGSLARSCVSYFSVAVIIL
FT                 LQAYSCCSFSSGILQMPQTTTPIVSSVGGRITRPQSPLQFVSEVHKESYAN
FT                 QMVRDVIIRLAPDREVRERALQRENPSLSDVLNIAQAFEVSRAVGNQIEAW
FT                 CEVSAVQPSTPRQPMEDEPTDADVAAIQQHSEQSGGRRRMRQQPKARGSQQ
FT                 QMTQAHSCSPLPSCPSCFVSHDRTVCPRRWATCHRCRKKGHIVSVCRSNPS
FT                 IHDQDMDTNVNCVAVLTAPVSKLFLDLKVFRKVLRMQVDTGAAVTLLNSQT
FT                 YVDLGSPPLLPVTRTLLSYNKQQIPVLGQFTAPATYRTVTRPLTFLVVDNA
FT                 STQNLFGMDTFRLFGFSISDEVNLVSDEVPYPQLDALCAEFSSLFTPGLGC
FT                 ATSFQAHIMMKSSARLLFFRARPLPVALRDSVKAELDHLRDLGVIRPISSS
FT                 EWSTPLVVLKNRLANCGSVAILRSQVVYSPGRLKKPTGKLRLCGDFKVTIN
FT                 AQSIIDTYPLPHQEELLAKLSGGFFFPKTDLAEAYLQLPLDEASQCLLVVS
FT                 TPFGLYQYLRLPFGVASAPTIFQRFLEQLTAPIPGCINYLDDIVVSGKSAD
FT                 DHLRNLRSLFLALQSAGLKCNLDKCQFFQPSIDYLGFHISREGISPLRHHV
FT                 TAISALPRPTSVKELQVFLGKIAYYHKFLPNAASIAQPLHALLHKGVRFQW
FT                 SPACEKAFSLLKQKLQSRPCLVPFQPGQHLVLATDASQHGVGKMVQSGPLR
FT                 MHKSIFSFETKAAVTPLLGSLPAWAALSLGHGRFPTWSGEDGTERPIAYAL
FT                 KTLNSAQLKYSQIEKEALAIVYALHKFYVFLYGTKFHLVMDHKPLISLFSP
FT                 SASLPDKAAHRLQSRCLALQHHFQIKPHTASNDGLSFCQDSTMKSISALRL
FT                 NMQMLTHSPISQRALTLFSTVMNCLFSPGCGGSTGSGWFSHYRLTDSVGHL
FT                 RRSRATTGGVMCTKQLAGEAPGPWFDPLRNYFSFRYQFSVRDGVLLLSTSD
FT                 AAPRVVIPSSLHWGSQSSQLGGGGGCPVQKHWPTAMCSGQGRSTKGGHSLL
FT                 SPLGFSVFSTGGGGGVSRTKALAHRHVFWPGLDGDIVRLVSACLKCATHQA
FT                 APHTSFSPWPEQAWEVHVDFAGPFLHSFWLLVVDAFSKFPYVVRCSSTSTA
FT                 VTVTALSKIFSLEGLPVTWLQIMARSSLSRVFRLLCPPGYPSCFGSSIPPP
FT                 IQRGGGMAGQNVQDPNEEICGSDVPRCCLREIPGILSIYTDGDKSPAELLH
FT                 GCQRGHCFTFCSPCRATSASRHRPISGRGRLYGHVVLAITLNGFQRSHALF
FT                 WPPSLRGPLEDGLTSRHVDQLRPRVAGREWEDTQQPPSGLPSMSENDRRAQ
FT                 LHPGQPPTATRELWPTTPTTWPAAAPPPPPLPPPPSPLESTPPMVPTLGED
FT                 STMDLNLLTVISQWPLSERAPELHASSSHDRTLRASSTFLW"
XX
SQ   Sequence 4413 BP; 924 A; 1268 C; 1063 G; 1155 T; 3 other;
     cattggcgac gagtgtgtca cgattccacg tgttcggtct tttctgccgt tatttcgtta        60
     ggtgtttttc tcgcaatgac agaaacggca ctcgcagaag tgctcgccgg ctkgttgaac       120
     gtcaggagac tctcgacgca gcgttgcaaa accagaatcg cctttttcgc cacggcgttg       180
     gagactcaaa ctcaggtatt gcagtcttta gcttcggcta tgtccgggcc tccgcgcccc       240
     acaggttctc akacatcgtc ctcagtctct tacccgccgc cctttcctgc atatgacgaa       300
     gactgcggaa gagtgggagg cctacgaaaa acgattgcgg caacactttc aggcgtttgg       360
     agttcaggat gcccttcttt gtcgggccct attcctctca tgggtttccc ccaggatcta       420
     tcaattgctg tgtcaactgg ctcccttgca agatcctgcg tctcttactt ttgatcagtt       480
     gctgtcatca tattactgca agcgtactca tgttgtagct tctcgagtgg aattttacag       540
     atgccgcaaa caaccacacc aatcgtatcg agcgtgggcg gccgaattac acggcctcag       600
     tcgccgttgc aatttgtgtc cgaggttcac aaggaatcat acgccaatca gatggtcagg       660
     gatgtgatta ttcgtcttgc acctgataga gaagtgaggg agcgagcttt gcaaagagaa       720
     aacccctcgt tgtccgatgt tctaaacatt gctcaagctt tcgaggtttc gagggccgtg       780
     ggaaaccaga ttgaggcttg gtgtgaggtg tcggctgttc agccctccac ccctcgccag       840
     ccaatggaag acgagcctac tgacgccgac gtggccgcaa ttcaacaaca ttctgagcag       900
     tcaggcggtc ggcgtcgtat gcggcaacag ccaaaggcac gcggctcgca acaacaaatg       960
     acacaggctc actcttgttc tcctttgcct tcctgccctt cttgttttgt cagtcacgat      1020
     cgtactgttt gtcctcggcg ctgggccaca tgtcatcgtt gcagaaagaa gggtcatatt      1080
     gtgtctgttt gtagatcaaa cccctccata catgatcagg atatggacac caatgtaaat      1140
     tgtgttgcag tgctcacagc acccgtttct aaactcttcc ttgaccttaa agtatttagg      1200
     aaggtcctcc gtatgcaggt tgatacgggg gcagcagtca ccttgttaaa ttcacaaacg      1260
     tatgttgact tgggctctcc gcccctcctg ccggtcactc gcacgctgct gagctataat      1320
     aaacaacaaa ttcccgtgct cggccagttt actgctccag cgacctaccg cacagtgact      1380
     cgccccttaa catttctggt ggtggacaat gcgtccacac aaaacctttt tggtatggac      1440
     acttttcggc tattcgggtt ttctatttcc gatgaggtca atctagtctc tgacgaggtg      1500
     ccatacccgc aactggacgc gctatgcgcg gaattttcgt ccttatttac gccggggttg      1560
     ggttgcgcca cgtcattcca ggctcacata atgatgaaat cttccgcacg gctgcttttt      1620
     tttcgggcgc gcccattacc tgtcgccctc cgtgactcag ttaaagcgga attagatcac      1680
     ctcagggacc tgggggtcat tcgccctata tcttcgagtg agtggtctac tcccctggtc      1740
     gtcttaaaaa accgactggc aaactgcggc tctgtggcga ttttaaggtc acaataaatg      1800
     cccagtccat tatagatact tacccgttac ctcaccagga ggagttgcta gctaaattgt      1860
     cgggaggatt tttttttccc aagacagatt tggcagaagc ctacctccag ctccccttag      1920
     acgaggcttc ccaatgtttg ttggtggtka gcactccttt tggcctgtac caatatttac      1980
     ggctcccatt cggggtggcc agtgccccca ctatttttca gcgattccta gaacagctca      2040
     ctgctccgat cccgggctgt ataaattacc tggatgacat tgtggtttcc ggcaaatccg      2100
     cagatgacca cttacgcaat ctacggtccc tttttttggc cctacagtct gccggtctta      2160
     aatgcaatct ggataagtgc caatttttcc aaccctctat tgactatctg ggctttcaca      2220
     tctcccgtga aggtatttcc cctttacgcc atcacgttac agccatttcg gctctgcctc      2280
     gccctacgtc ggtgaaggag ttgcaggtct ttctaggcaa gattgcgtat tatcataaat      2340
     tccttcccaa tgcggcatcc attgcacaac cgttgcatgc cctactgcac aaaggcgtgc      2400
     gttttcagtg gtccccagca tgtgaaaaag cattttctct tttgaaacaa aagctgcagt      2460
     cacgcccttg cttggttccc ttccagcctg ggcagcactt agtcttggcc acggacgctt      2520
     cccaacatgg agtggggaag atggtacaga gcggcccatt gcgtatgcat tgaaaacatt      2580
     gaactcggca caactcaagt actcgcagat cgaaaaagag gcactcgcca ttgtctatgc      2640
     attacacaaa ttctacgtct tcttgtatgg cacaaaattc catttggtca tggaccacaa      2700
     acccctgatc tcgttgttta gcccttcagc atcacttcca gataaagccg cacaccgcct      2760
     ccaatgatgg gctctctttt tgtcaagatt caactatgaa atccatttcc gccctacggc      2820
     tcaacatgca aatgctgacg cactctccca tctcccagcg ggccctgacc ctgttttcga      2880
     cagtaatgaa ctgcttgttt tcacctggat gtggaggctc aacaggcagt ggatggtttt      2940
     cccattaccg cctcacggat agtgtcggcc acctccgccg atcccgtgct acgacaggtg      3000
     gtgtcatgtg tacaaaacag ctggccggag aggcccccgg gccatggttc gacccgcttc      3060
     gcaattattt ctcatttcgg taccagtttt cggtccggga tggtgtcctc ttgttatcta      3120
     catctgacgc agcaccaagg gtggtcattc cctcctctct ccattggggt tctcagtctt      3180
     ctcaactggg gggggggggg gggtgtcccg tacaaaagca ctggcccacc gccatgtgtt      3240
     ctggccaggg ctagatggag atattgtccg ccttgtttct gcctgtttga aatgtgccac      3300
     ccaccaggca gctccccaca cgtctttttc tccgtggccg gaacaagcat gggaatgagt      3360
     tcatgtggac ttcgcgggtc cctttttgca ttctttttgg ctgttggtgg tagatgcatt      3420
     ctcaaagttt ccatatgtgg ttcgttgtag ttctacatcg acggcggtaa cggtcacggc      3480
     actttcgaaa atcttttctt tggaaggctt gccagtcact tggttacaga taatggcccg      3540
     cagttctctc tcaagagttt tcagacttct gtgcccaccg gggtatccgt catgttttgg      3600
     ctcctccatt ccacccccaa tccaacgggg aggtggaatg gctggtcaga acgttcaaga      3660
     cccaaatgaa gaaatatgtg gttcagacgt cccccgatgt tgccttagag aaattcctgg      3720
     catcctatcg atttacaccg atggtgacaa gagtccggct gagcttctac atggctgcca      3780
     gcgcggacac tgcttcacct tctgcagccc ctgccgggcc acgtccgcaa gtcgccatcg      3840
     acccatttcc ggccgggggc ggctgtatgg gcacgtggtt ttggccatca ccctaaatgg      3900
     attccagcgg tctcacgcgc tgttctggcc gccatctctg cgaggtccac tggaggatgg      3960
     tctcacatcc cgacatgtgg atcaactgcg acctcgagtg gcaggccgag agtgggagga      4020
     cacgcagcag cctccctcag ggctcccatc aatgtcagag aacgaccgcc gagctcagct      4080
     tcatccaggc caacccccca cggcaaccag ggagctgtgg cccacgacac caacaacctg      4140
     gccagcagca gccccaccgc caccaccact tcctcctcct ccctctccac ttgagtctac      4200
     acccccgatg gtaccgaccc tgggagagga cagcaccatg gatctcaacc tcctcaccgt      4260
     catatcgcaa tggccactgt cagagagagc gcccgagctg cacgcttcca gttcccacga      4320
     ccgtactctc cgtgccagct cgacattttt gtggtgagac ccaatggatg tgtcgtgtgt      4380
     gtggtgttcc ctttctccgc aaggaagggg atg                                   4413
//
ID   Gypsy-77_LMi-LTR repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-77_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-238
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus.
XX
SQ   Sequence 238 BP; 60 A; 54 C; 75 G; 49 T; 0 other;
     tgctgtgagg tagcgagcgc gagcgcgcat tcaaatagtg tgcgccgtcc gcgtacttac        60
     gacgcccacc accagaggcg tgagcaggac aagtgcaggc agcgcgccac ggactaacgt       120
     caggcgggga gagcaggagc tgttcagtta tgttgggtat ctgctagaga caacaagtca       180
     acagccgatg aaggcgtttt cagttacagt ggtattttat gtgtttgaga atacaaca         238
//
ID   Gypsy-78_AA-I repbase;    DNA;    INV; 6590 BP.
XX
AC   supercont1.245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_AA_;
KW   Gypsy-78_AA-LTR; Gypsy-78_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6590
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.245; Positions  847815  841226.
XX
CC   Positions [4641-5117] - Integrase core
CC   'TAAC' target site duplication
CC   LTRs are 98% similar to each other. Includes an insertion of
CC   a non-autonomous  DNA transposon at positions 2735-2934
CC   (masked).
XX
FH   Key           Location/Qualifiers
FT   CDS           523..1854
FT                 /product="Gypsy-78_AA-I_1p"
FT                 /translation="MIAHLRTKKKNIIMSIKQKSNRITVNPHYRRDTMANN
FT                 GKYIRPIDPTIVEDDDTSSGDESANQPDDEHSSSPNSSSSSSDSSSSSDSD
FT                 TDNEENQEELTCVSETDAPVALQIPSPVALSASETGSIENPPRDAVVQAIH
FT                 EERIERMEKMLTSINETLSHFQPSSRPAVNETPDDSWNVSNQANTCANTGG
FT                 SSSFNIRWDHLKPFPSGVAANKMWEEWNRYIENFELAVSLSNLYDPVKRTQ
FT                 LLFLSIGSELQEVIKAVKLRPSLKTPDCYTTFVSNIKSYFRSMTDTAAEHE
FT                 AFARMKQENGEPAVAFHARLMGKVRSCNYNVDDEDRFVRAQLLSGLRNREL
FT                 VKQARTYGHDTNFIVQSAARSEAFEAETYQREGTGVFEVKRLHRVSPHERD
FT                 NHKRSNAGNRAEGPPFKQHRNGVLNQRPQERRQRCTRCFLFSHRNGQCPA"
FT   CDS           2937..5600
FT                 /product="Gypsy-78_AA-I_2p"
FT                 /translation="MFFTFFFSLDCNDYREAARNRLKDMESQGIIEKVTWA
FT                 PNWISGMSAVAKGNNDFRLVVNMRAPNRAINREYYRLPLLDEMRVKLHGAR
FT                 YFSKLDLSNAFYHLELSEESRDLTTFLAEDGMYRFTRLMFGVNCAPEIFQR
FT                 EMVRILKDVDNIIIFIDDILIFAETVESLRATVSRVLQILRENNLTLNQAK
FT                 CEFDQTKIKFVGHILDADGFHIDDEKIKSVRRFREPTTLSELRSFLGLASF
FT                 LSPYLENFAKITSSLWTSTASKTWSWGPEQSESFEALKQQIIHCTISLGFF
FT                 SEEDDTILYTDASPIALGAVLVQQGSNQPPRIISFASKALTPTEKKYAQNQ
FT                 REALGAVWAVEHFSYFLLGRHFTLRTDAQGMTFILNRSREDSKRALTRADG
FT                 WALRLSPYNYSVEYVRGIDNIADSSSRLYDGEDAPFDEETSPWEIASLETN
FT                 SVEFLTEAEIRDATDQDDILLQIISALETGMWHKDLRKYQAIENDLAIQNG
FT                 ILLKTGCAVVPKTLRTRALEVAHEGHPTIAKMKSIMRQRVWWPGMCSEITK
FT                 WVSSCQTCCVNGKPERPPPMERVFAPKVAWESIAIDFNGPYTKFGGILILV
FT                 IVDYRSRYIIARPVRSTKFECTQKVLDDVFEKEGYPKTIRSDNGPPFNGTD
FT                 FAEYCKKRDISMTFSTPLFPQQNGLAESSMKLINRAMAAATANNTNYVEEL
FT                 KKAINAHNAAAHSVTNVPPEEVMYGRKIKRGLPLVQHGKSNYDENLFERND
FT                 REEKLASKFREDCRRGARQCRVKPGDEVVVERHNRSKGDSRFSPTKYTVIQ
FT                 ERNGSLILNDREGKVTKRHVTQTKKVGQWRESHHLTTTPTSEKQSNIEKPT
FT                 LEPFQRPSRERRTPAFLQDYVQVVQSDLNMNPERE"
XX
SQ   Sequence 6590 BP; 2035 A; 1437 C; 1413 G; 1505 T; 200 other;
     atggcgatcc atagccaggc gttgctgctt ccttgcagta acgtaaactc agaacctaat        60
     cacacttgat tacctatatc agcgttgaaa aggaattaac tagttggtaa aagctccttc       120
     gctagaaagc aaatcgaagg ttaacaattt gtcattaaaa catggcggat tgtgaaaacg       180
     tgcttggtaa aggcgaccta taatcagcgg atcacttcga tcgcgcattt taaagcggac       240
     cataagcgtc gcgcacttgc aatcaaaaat aaatgaataa gcggacaaac agtcgcgcac       300
     tttataatgc ataggatgac cgcgctccag agaagtggac aacgcatttg tcacgcataa       360
     gagaagcggg tcagtttaat caataagcgg acgaaacgtc gtgcattaaa agagaagcgg       420
     actaggtcgc gcattgtaga gcggactagg tcgcgcattg tagagcggac taggtcacgc       480
     actgaaaagc ggactaagtc gcgcattata gagcggacca gaatgatcgc gcatcttagg       540
     accaaaaaaa aaaacataat aatgagtata aagcaaaaat ctaacagaat tacggttaat       600
     cctcattaca ggcgtgacac aatggcgaac aatggcaaat atatccgacc tatcgacccg       660
     accatcgtcg aagatgatga cacgtcgtcc ggtgatgaat cagcaaacca gcccgacgat       720
     gaacactctt caagcccgaa ctcttcaagc agcagtagtg acagcagtag cagctcggat       780
     agcgacaccg acaatgagga gaatcaggag gaattgacat gtgtctcgga aacggatgct       840
     ccagtagccc tgcaaattcc ttcgccagtc gctctttcgg cgtcagaaac aggttccatc       900
     gaaaatcccc cccgtgatgc agtagtacaa gcaatacacg aggagcgcat cgagcgaatg       960
     gaaaaaatgc tcacaagcat caacgaaaca ttgagtcatt ttcaacccag ctctcgaccg      1020
     gcagtgaacg aaacccctga tgacagctgg aatgtatcca atcaagcaaa cacatgtgcc      1080
     aataccggcg gaagctcctc cttcaacatt cgttgggacc atttaaaacc attcccgagc      1140
     ggagtagccg ctaacaaaat gtgggaggag tggaaccgct acatcgagaa ctttgagtta      1200
     gcggtttcac tcagcaacct atacgaccct gtcaaaagga cgcaactgtt atttctgtcc      1260
     attggcagtg agcttcaaga agttatcaaa gcggtcaagc tgcgcccaag tttgaaaacc      1320
     ccagattgtt acaccacttt tgtctcgaac ataaaaagct acttccgttc gatgacagat      1380
     accgccgccg agcacgaggc ttttgcacga atgaagcagg agaacggaga accagccgtc      1440
     gcttttcatg cacgattgat ggggaaagtg cgctcatgca actacaatgt tgacgacgaa      1500
     gaccggtttg tgcgagcaca actactaagt ggactaagga atcgagaact ggttaaacaa      1560
     gctcgaacct acggacatga tacaaacttc attgtccagt cggcagcacg gagcgaagcg      1620
     tttgaggctg agacatacca gcgcgaagga actggtgtct tcgaagttaa aaggctacac      1680
     cgagtttcac cacacgagcg agacaatcat aagcgatcaa atgcaggaaa ccgagcagaa      1740
     ggaccaccat tcaagcagca tcgtaacggt gtgttgaacc aacgaccgca agaacgacgc      1800
     cagcgttgta cgcgttgttt tctgttcagc caccggaacg gccaatgccc tgcgtagaat      1860
     cgtaattgca acagatgtgg caaacgtgga catttcgtgg cagcttgccg acagaggcaa      1920
     ataaatcaca tgcagtacga acgaagcgat acgtcaatgg acaaattgat gccccctggt      1980
     gaggagaagt acgctgacga caaacaggta ctagaccatt aatgtatacc ttaaatgatt      2040
     gaatttcatt tgttatttca aataaagcta atacctgcgt aatatgctag ttttctcata      2100
     tcaatcgaaa tatccattct ccactactat aggaaatcaa cgcactctct ttgcaagacg      2160
     tattgattga ttgttctgtt ggatcgtcca gtgctatacg tttcttgata gactctggtg      2220
     ctgatgctaa cgtcattggc gggaaagatt gggagcggtt agaacgagag gccagactag      2280
     gcgaagcaaa atttgaaata ctgagtggca gttctagcaa tagactgcac gcatatggag      2340
     cgaaagatcc catgaccata gagtgtgttt tcaaagcaga aatcacgaaa gcaagttcag      2400
     gtcccttgca aatagcaaca ccggccgtgt tccacgttgt acttaaggga acaaggtccc      2460
     tacttggaag gtcaacagca agcgacatgg gactgctaca gattaacaac accatcaacc      2520
     aatgcgagaa gaacgagatt ttccccaaga tgcccggagt taaagtacgt tttagtgtca      2580
     ataaggacat tccgtcatca aaaagcgctt actataacgt gccagctgca tacaggtgag      2640
     cataaacatt ttcaaaataa atgggtattt aaaaaaaaaa tactccggta ccaccaaaat      2700
     taggagccac tgttttctca caataacgaa ccaaxxxxxx xxxxxxxxxx xxxxxxxxxx      2760
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2820
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2880
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxctatgt      2940
     tttttacttt tttcttttct ctcgattgta atgattacag agaggcggca cgcaacagat      3000
     tgaaagacat ggaatcacaa ggcataattg agaaggtcac atgggccccg aattggatca      3060
     gcggaatgtc cgcggtggcc aaaggcaaca atgatttcag acttgtagtt aatatgcgcg      3120
     cccctaaccg cgctattaac cgagaatatt acagacttcc tttgctcgac gaaatgagag      3180
     taaaactcca cggtgcaagg tatttttcaa agctcgatct gagcaatgcc ttctaccatc      3240
     tcgagctgtc tgaggaatcc cgagacttaa caacgttttt agccgaagat ggcatgtata      3300
     ggtttacccg tctcatgttt ggcgtaaatt gtgcgcccga aatttttcag cgcgaaatgg      3360
     ttcgcatcct gaaagatgtc gataacatta taatattcat cgacgatatc cttattttcg      3420
     ctgagacggt ggagtctctt cgagcaacag tctctagggt gctacagatt ctgagagaaa      3480
     ataacttaac tttgaatcaa gcaaagtgtg agttcgacca gaccaaaatc aagtttgttg      3540
     gtcatatact cgatgcggat ggtttccaca tagacgatga gaagattaaa agcgttcgtc      3600
     gctttagaga accgacaact ctgtcggaac ttcgaagctt cttaggctta gcatcgttcc      3660
     taagtcccta tctcgaaaat tttgcgaaaa ttacaagttc actatggacc tcaaccgcgt      3720
     ccaaaacatg gtcttgggga ccggaacaaa gcgaatcatt cgaagcactc aaacaacaaa      3780
     tcatccattg tacaatttca ttgggatttt tctctgagga agacgatact atcctctaca      3840
     ccgacgcctc gcccattgct ctgggtgctg ttttggtaca acagggttcg aaccaaccac      3900
     cgaggattat aagcttcgcc tccaaagcac tcactcccac cgaaaagaag tatgcacaaa      3960
     atcagcgtga agccttaggt gcagtatggg ccgtggaaca cttttcctac ttcctgctcg      4020
     gtaggcactt cacgctccgt actgacgcac agggaatgac attcatcctc aaccggtctc      4080
     gagaagattc caaaagggca ttgacacgtg ctgatggatg ggctctgagg ttaagcccgt      4140
     acaactatag tgttgagtac gttcgtggca tagataatat cgcggactca tcatctcgat      4200
     tgtacgatgg ggaagacgca cccttcgatg aggaaactag tccgtgggaa atagcgtcac      4260
     ttgaaacgaa ttctgtggag ttcctaacgg aagcagaaat cagagacgca actgaccaag      4320
     acgacatcct gctacaaatc atttcggccc ttgaaacagg catgtggcat aaggatctac      4380
     gcaaatacca agcgatagaa aatgatctgg cgattcaaaa cggaattctc ctcaagactg      4440
     gctgcgctgt cgtacccaag acacttcgaa cacgggcatt agaagttgct cacgagggac      4500
     acccaacgat cgcaaaaatg aagagcataa tgcggcaacg ggtgtggtgg cctggtatgt      4560
     gcagcgaaat caccaaatgg gtgagctctt gccaaacatg ttgtgtcaat ggtaaaccag      4620
     aaagaccacc cccaatggag cgcgtatttg cgccaaaagt agcttgggaa tccatcgcaa      4680
     tagacttcaa cggaccctac accaaattcg gcggcatctt gattctagtc atcgtcgact      4740
     acagatcaag gtacatcatc gcacggcctg tgagatctac aaaatttgaa tgtacgcaga      4800
     aagttctgga cgatgtgttt gaaaaagaag ggtacccaaa aacaataagg agcgataatg      4860
     ggcctccatt taatggcaca gattttgccg agtactgtaa aaagcgagat atctcaatga      4920
     cattttcaac acctcttttt ccgcagcaaa acgggcttgc cgagagctca atgaaactaa      4980
     taaacagagc tatggctgct gcaactgcaa acaatactaa ttatgttgag gaattgaaga      5040
     aagcaatcaa tgctcataac gcggctgcac atagtgttac taatgtacct cccgaagaag      5100
     ttatgtatgg tcgcaaaatc aaacgtggat tgcctttagt acagcatggg aaatcaaact      5160
     acgatgagaa ccttttcgaa cgtaacgatc gcgaggaaaa attggccagc aaattccgcg      5220
     aagattgtag acgaggtgct cgtcaatgta gagtaaaacc cggtgacgaa gttgtggtcg      5280
     aacgccataa tcgttccaaa ggagactccc gcttttctcc aacaaaatac actgtaatcc      5340
     aagaacgaaa tggaagcctt attctaaacg acagggaagg aaaagttacc aaacgacacg      5400
     tgacacaaac aaaaaaggtt ggccagtggc gagaatcgca tcatttgacc actaccccaa      5460
     cttcagagaa gcaatcaaac atagagaaac caacactgga accgttccag aggccgtctc      5520
     gagaaagaag aactccagca tttctccaag actacgtaca agtagtacag agtgatttaa      5580
     acatgaaccc cgaaagggag taagtcgaat caattggtaa tgtaatcttt catactgttg      5640
     cttagaagct aaaataaaat aagggtataa aaacatatta ctgaccttga ccttttcttc      5700
     aatcactcca ccaactgtga aaacgtgaca atttcttttt atgggccttt cccatctttc      5760
     tttttattca cagtcgagat cattgaaatc tagagattat tcttaaatcc cacagtaatt      5820
     acggccgcaa cttctcccag ttgaagtgtc caattggcaa gagactgtga gcggaagtct      5880
     cgctaggcgt ccttgacttc tgtgcttaac ttatcgtcga cgttatcaca ggatagttgt      5940
     tcgctccaaa cactttttta ggaatcccac tggagtgagg gccgccagaa ccgcagctga      6000
     agtgttcaat tgtgaattgg atcctggacc tgttgccgac gtaaaccaac atcgaatgac      6060
     tgttacctcc cccacattcc tctgcaaaaa aaaaaaaata gctcttggat actgtttggc      6120
     aatgcaaaaa gcatacatct atggtaatta gatacttacg atacaatatt acagccgaca      6180
     atcgacctat aagcttttta ttaatctaat aaactcgatc ctcaaaacag cgaacgaaca      6240
     acaaaacaaa tcaacagcaa taaaacaaat tagtttgaca gcaccaaatt tgataaaggg      6300
     cgagattccg aaaactcaac cgcaggggtg aacagtgggc gcattctgtt ttttttgagc      6360
     ataaatacac tgaaatattt tcgaaaatga aacgaaaaaa ttacccaaca catttattca      6420
     aattcgcatt cattgtgtaa gaaacagtgt accgcgtcaa ttttattact ctgagagatc      6480
     caatcaagcg aaaaattacg atttcaattt gaattactgt aggatttaca aaaaataatc      6540
     tgtttatttt agagaagggg gtggatgtgt gggtgcgaaa gggttagtta                 6590
//
ID   Gypsy-78_AA-LTR repbase;    DNA;    INV; 183 BP.
XX
AC   supercont1.245;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_AA_;
KW   Gypsy-78_AA-I; Gypsy-78_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.245; Positions  841225  841043.
XX
SQ   Sequence 183 BP; 45 A; 45 C; 42 G; 51 T; 0 other;
     tgtgaagtgt accccaacct taacttccag tgtatggcac tcaatatgag tgccatcgca        60
     gtaggcttat gcaggcagca aatatctctg tcctcacttt ctatcaccga ccggcgttga       120
     ggtaagacat gctgtgcgaa gacactagtt aattcctttt cggctggtat cagggtatgc       180
     aca                                                                     183
//
ID   Gypsy-78_CQ-I repbase;    DNA;    INV; 4629 BP.
XX
AC   AAWU01003709;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_CQ_;
KW   Gypsy-78_CQ-LTR; Gypsy-78_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4629
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 535-535 (2011).
XX
DR   Genome; AAWU01003709; Positions   41695   46323.
XX
CC   Positions [3454-3954] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           84..3683
FT                 /product="Gypsy-78_CQ-I_2p"
FT                 /translation="MDGEDHLINPGDGSGNGTNGQQAGPGLRPFLPPNPRQ
FT                 PLIRPPQFQPQNHQQQAQVTTDVLMLQVLQQIAQQLQQQQAMYQQQNQTFL
FT                 QQQGQMFRNGINVQVPPNPEQLLDSLASNIKEFRFEPDQNVTFAGWFARYK
FT                 DLFEQDAVRLDDPAKTRLLLRKVGPTEYERYCNYILPQSPNLIDFDTTVAK
FT                 LKSLFGTTESVISRRYRCLQVTKQATEDYKSYACRVNKLCVDFELGRLSEH
FT                 QFKCLVFVCGLKAEKDAEIRTRLLSRIEENAEVTLEQISDECQRILNIKHD
FT                 TAMIESASSSSSAAVQAVKRNQQYGKRSFRSNNEAAPRSTKPNGKTPGSPC
FT                 WNCGSMHFSWDCPFAKHRCRDCGQVGHKDGYCSSARKSSKPGQRSSKPVET
FT                 KSVVVRNVKKRRKFVQAQVNGRRVALQLDTASDISVISEQTWREIGKPAPK
FT                 PATVQAATASGKPLKLEFQCATEININGVVREGRFYVVKQQLNLLGLDLID
FT                 EFDFWSVPINQFCNQVSSFPSTLGAVKAAFPAVFNDAPGLCTKAKVKFSLK
FT                 DGQTPVFRPKRPVAYAMCKTVSDELERLEHAGIISPVEYSEWAAPIVVVRK
FT                 ASGAVRICGDYSTGLNDALHPHQYPLPIPQDIFAGLANCKVFSQIDLSDAY
FT                 LQVEVDEDSRELLTINTHRGLYRYNRLSPGVKPAPGAFQQIVDTMMAGTNG
FT                 AAAYLDDILVGGVDEADHWRNLQAVLKRIQDYGFTIKAEKCSFAQRQIKYL
FT                 GHLIDEHGLRPDPAKLDVIRNLPAPKDVSGVRSFLGAINYYGKFVPSMRTL
FT                 RYPLDELLKTTNKFVWTAKCQEAFERFKAILSSDLLLTHYDPAQEIIVSAD
FT                 ASSIGIGATISHRFPDGSIKVVQHASRALTSTEQAYSQPDREGLAIIYAVT
FT                 KFHKMLFGRRFLLQTDHAPLLRIFGSKKGIPVYTANRLQRYALQLLLYDFK
FT                 IAHVSTEKFGDADVLSRLIDQHAKPDEDFVVASITLEEDVRSIVKESINAL
FT                 PLSFRVVQQHTKSDPVLRKVLQYIQQGWPKSKTAIADRELKVFFDRRDSLC
FT                 TVQGCVTFAERLAIPSAFRARCLQHLHRGHPGIERMKALARSYVYWPSIDA
FT                 DIAGHVGTCRHCAAVAKSPPKAPPQPWPKSTFPWQRVHVDYAGPIEATTSC
FT                 SVSTRIQMGRNHQNQIYHSFCDYRHCQKSVRSPWYARNSGQ"
FT   CDS           3664..4617
FT                 /product="Gypsy-78_CQ-I_1p"
FT                 /translation="MPETLVSDNGTQFTSAEFGQFCLENGINHMTTAPFYP
FT                 QSNGQAERFVDTFKRAVKKIREGRGTINEALDTFLLTYRSTPNPSAPDGKS
FT                 PSEAMFGRKIRTSLDLLRPPAVPVVKANEEQNAKRSIQKGDCVYVKIYSAN
FT                 AWRWAPGVVLERLGRVMFNIWAENKRMIRSHLNQLRFRTTDGQRGLGVQGA
FT                 KPSTKLPLDILLKECILQRPSTASKNTASPASSPQSAPNTSSLGVPSEQST
FT                 PIQSPQATAEATNWESPRSPSFRSATASPAAVPSTSKPVSSPEFLSASENE
FT                 PAVPFKPRRSSRHRRVPIRFDPYQLF"
XX
SQ   Sequence 4629 BP; 1167 A; 1323 C; 1222 G; 917 T; 0 other;
     cctgtcgcgc tcgtaaaatt ggcgacgagt aaggtcgtgg aaatcaccgt gagaaattgc        60
     ctcccccgag gaagcggagg aggatggacg gcgaggacca cctgatcaac ccgggcgacg       120
     gaagcggtaa cgggacaaac ggccagcaag ccggtccagg actacgcccc ttcctgccac       180
     cgaacccgag acaacccttg atccgtcctc cgcaattcca acctcaaaat catcagcagc       240
     aagctcaagt taccacggac gtgctgatgc tacaagtcct ccagcaaatc gctcagcagc       300
     ttcaacaaca gcaagcgatg taccagcagc agaaccagac attcttgcaa cagcaaggcc       360
     aaatgttccg gaacggcatc aacgttcaag ttccacccaa tccggagcag ctccttgact       420
     cactagcatc aaacatcaag gagttccgct tcgaaccaga tcagaacgtc acgttcgctg       480
     gttggttcgc tcggtacaag gacttatttg agcaggacgc cgtgcgcctg gacgacccgg       540
     cgaagacgcg tctgctgcta cggaaggttg gtccaactga gtacgagagg tactgcaact       600
     acattcttcc gcaaagcccc aacctgatcg acttcgacac cactgtggcc aagctcaaaa       660
     gccttttcgg caccacagag tcggtgatca gccggaggta tcgatgtcta caagtcacca       720
     aacaagcaac cgaggactac aagagctacg catgcagagt caataaactg tgtgtggact       780
     tcgagcttgg acggctctcg gaacaccaat tcaagtgtct cgtgtttgtt tgtgggctga       840
     aggcggaaaa ggatgcggag atcaggacaa ggttgctcag caggatcgag gagaacgcgg       900
     aagtcaccct ggagcagatt tccgacgagt gtcagcggat cctgaacatc aaacacgaca       960
     cggcgatgat agaatcagcg tcgtcatcgt cttcagcagc ggttcaagcg gtgaagcgga      1020
     atcaacagta cgggaagcga tcgttccggt cgaacaacga agctgcgccg cgctcaacca      1080
     agccgaacgg gaaaacccct gggtcgccat gctggaactg cggttctatg cacttctcct      1140
     gggactgccc attcgcaaag catcgctgca gagactgtgg tcaagttggt cacaaggacg      1200
     ggtactgttc aagtgcgagg aagtcatcga aacccggcca acgctcgtca aaacccgtag      1260
     agacgaaaag tgtcgtggtg cggaacgtca agaagagaag aaagttcgtg caggcgcagg      1320
     tgaacggccg acgcgttgct ctccagttgg acacggcgtc cgacatcagt gtcatctcag      1380
     agcagacgtg gagagaaatc ggcaaacctg caccgaaacc tgcgaccgtt caagctgcaa      1440
     cagcatccgg caagccgctc aaattggagt tccagtgcgc caccgaaatc aacatcaacg      1500
     gtgtcgtgcg tgaaggacgg ttctatgtcg tgaagcagca actcaattta ctggggctcg      1560
     atctcatcga cgagttcgac ttctggtcag tgccaatcaa ccagttctgc aatcaagtca      1620
     gcagtttccc atcaacactt ggcgctgtca aagcagcttt tccagctgtt ttcaacgatg      1680
     ccccaggact gtgcacgaag gcgaaggtca aattcagtct caaggacggc caaacacctg      1740
     tgtttcggcc gaaacgacct gtcgcctacg ccatgtgcaa gacagtaagc gatgaactgg      1800
     aacgcctcga acacgccgga atcatctcac cggtggaata ctcggagtgg gctgctccga      1860
     tcgtggttgt ccggaaagca agcggagcgg ttcgaatctg cggcgactac tcgacgggcc      1920
     tcaacgacgc cctgcatccg catcagtacc cgctcccgat accgcaggac atcttcgccg      1980
     gactggcgaa ctgtaaggtg ttcagccaga tcgatttatc ggatgcgtac ctacaggttg      2040
     aagttgacga agacagccgg gaactgctca cgatcaacac gcaccgaggt ctctatcgct      2100
     ataatcggct ctcgccaggt gtcaaacccg cacccggagc ttttcaacag atagtagaca      2160
     ccatgatggc aggtaccaac ggagctgcgg cctacttgga tgacatcctg gtgggtggcg      2220
     tcgacgaagc cgaccactgg cgcaacctgc aagcagttct caagcgcatc caagattacg      2280
     ggttcaccat caaggcggaa aaatgttcat ttgcccagcg ccagatcaag tacctgggtc      2340
     atctcatcga cgaacacggt ctgcgccctg atccagccaa gctcgatgtg atccggaacc      2400
     ttccagctcc aaaagacgtc tccggcgtga gatcgtttct gggggctatc aactactacg      2460
     ggaagtttgt tccgagcatg cgaacgcttc gttacccgtt ggacgaacta ctcaagacaa      2520
     ccaacaagtt cgtctggact gccaagtgcc aggaagcgtt cgagaggttc aaggcgattc      2580
     tatcgtccga cctgttactg acgcactacg atccagctca agaaatcatt gtgtcggcgg      2640
     atgcgtcgtc gatcggcatc ggggccacga tcagccacag gttcccggac ggatcgatca      2700
     aggttgtgca gcatgcttca agagcgttga cctcgaccga gcaagcctac agccaaccag      2760
     atcgcgaagg actagccatc atctacgctg tgaccaagtt ccacaaaatg ctttttggtc      2820
     gcagattcct tctccaaacc gatcacgctc ctcttctccg aatttttggt tcaaagaagg      2880
     gaataccagt gtacacggcg aaccgtttgc agcgttatgc gttacaactc cttctgtacg      2940
     acttcaagat tgcccacgtc agcacggaga agtttggaga tgcggatgtc ctttcgcgcc      3000
     tgatcgacca gcacgcaaaa cctgacgagg atttcgttgt agccagcatc accttggagg      3060
     aagacgtcag gtcgattgtc aaggaatcaa taaacgcact tcctctcagt ttcagagtcg      3120
     ttcaacaaca caccaagtct gacccggtac ttcggaaagt cctccagtac atccagcaag      3180
     gttggcccaa gtcaaagacg gccattgctg accgggagct taaggtgttc ttcgaccgaa      3240
     gggactcgct ctgcacagtc caagggtgcg tcactttcgc ggaacgactc gcgattccat      3300
     cggcgttccg ggctcgctgc ctccagcatc tgcaccgcgg ccatcccggg attgagcgca      3360
     tgaaggcgtt ggctcgtagt tacgtgtact ggccatcaat cgacgccgat atcgccggac      3420
     acgttggaac gtgtcgtcac tgcgctgcag ttgccaaaag tccgcccaaa gcaccaccgc      3480
     aaccatggcc aaagtcaacc ttcccgtggc agcgggtgca cgtggactac gcaggtccga      3540
     tcgaagcgac tacttcctgc tctgtgtcga ctcgtattca aatgggtcga aatcaccaaa      3600
     accaaatcta tcacagcttc tgcgactatc gccattgtca gaagtctgtt cgctcgcctt      3660
     ggtatgccag aaactctggt cagtgataac ggcacccagt tcactagtgc cgagtttgga      3720
     cagttctgct tggagaacgg aatcaaccac atgacgactg ccccgttcta cccgcagtcg      3780
     aatggccagg cggagcggtt tgtcgacacc tttaaaagag cagtgaagaa aatcagagag      3840
     gggagaggaa cgatcaacga agcactggac accttcttgt tgacgtacag atcaacgcca      3900
     aacccgtcag cacctgacgg taaatcgcct tctgaagcca tgttcggtcg caagatccgg      3960
     acgagcctgg atttgcttcg accgcctgct gtccctgtgg taaaggccaa cgaggagcag      4020
     aacgccaaac gatcgatcca gaaaggtgat tgtgtgtacg tgaaaatcta ctcggcgaac      4080
     gcctggaggt gggcgcctgg agtagtcctc gagcgcctcg gacgggtgat gttcaacatc      4140
     tgggctgaga ataagcgaat gatccggtca catctcaatc agctgcgatt ccggacaaca      4200
     gatggtcaac gtgggttggg agttcagggt gccaagccaa gtacaaaact gcctctggat      4260
     attctgctga aggagtgcat cttgcagcgg ccaagtacag catcaaagaa caccgcctcg      4320
     ccagcttctt ccccgcagtc ggcacccaac acatcatcgc tcggagttcc ctctgagcaa      4380
     tcaacaccga tccagtcacc gcaagccacg gctgaagcga cgaactggga gtcaccacgg      4440
     tcaccatcct ttcgttcagc gactgcatcc ccggcagcgg tgccatctac ctccaaacca      4500
     gtctcttcgc cagagttcct gtcagcaagc gagaacgaac cagctgttcc gttcaaaccg      4560
     cggcgctctt caaggcatcg gagagttccg ataaggtttg acccatacca gctgttttaa      4620
     ggagggaga                                                              4629
//
ID   Gypsy-78_CQ-LTR repbase;    DNA;    INV; 243 BP.
XX
AC   AAWU01003709;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_CQ_;
KW   Gypsy-78_CQ-I; Gypsy-78_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-243
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 536-536 (2011).
XX
DR   Genome; AAWU01003709; Positions   41452   41694.
XX
SQ   Sequence 243 BP; 54 A; 56 C; 61 G; 72 T; 0 other;
     tgttgggaac gaatggatca ccctgttcac caacggcatc gtagcaacac cgctgggctc        60
     actcgtggca gttcagctgt caccggtcga tgcaggaaac agctcaactc ttagtggcgt       120
     cattatctgg tggattgtct taccgcgtgg aacgcggact gttttaatcc ggctaaataa       180
     agttttttta atgtgtagta atttacgttg cgcgttgtat tattgccacc ttaattgcgg       240
     cca                                                                     243
//
ID   Gypsy-78_DEl-I repbase;    DNA;    INV; 6425 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_DEl-I;
KW   Gypsy-78_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6425
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7039-7039 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 6425 BP; 1700 A; 1925 C; 1731 G; 1051 T; 18 other;
     agtggcgccc gagcagggac ctgataggga gaaaaaccag gaaaattacc acctgtatgg        60
     ggagtgcgta accctaggac gagtgacata acccaaaaat tccgcgagac tcaatcgaaa       120
     actaaaacca aagtgtaccg cccgtgaaaa ataacctcaa cgaactagtg aacgcgcccg       180
     gggtcacagc ccatgtgctg cttcgcgatc ccgtacagtc cacgcgacca agtgcctgtg       240
     aaaaacacga acatatagcc ccaagaggga cagtgaagac caacaaagac actattccca       300
     gaagacaaca caccaaaaca gcgctgcaac catgggtccc gaccagaaaa tttccggtga       360
     gtccgttcca cacttactta aaaaccctgg ggtcccctcg cggtggattt attcacgttt       420
     gaaggccgaa ttactagcct ttgctgacga attcgggttc tccgccgagg gaatcgtcga       480
     cgacttgcgg cgaaattttg ccaccctagt tagagactca gaacaaamcc aagaagtttg       540
     ggatcgcctc gccgacctgg agaggcaatt ctcttcacgt gccccgagcc ccgtacattt       600
     gggggaacat gggcgccgcg aacatgggcg ccggatacag tccaggtgtc tcctccggag       660
     gaggcctccc cagtgatcgc taamcgggaa acttttatag atccgagcca cgatcggaac       720
     cgccgcgagt ttgtctgcgt ccccgaacga attcgtaaat ggggtcttca attcgatggg       780
     tattcagacc cgctagcctt catcgaacag gtcgagagcc ggacattatc ctacgggatc       840
     gacctagaac tccttccgcg agccatggca gagctgctga cgagcagagc ggacaagtgg       900
     tttcagacca gccgcctcca aggggctgac tggaccacat ttcgacgaga attcctcgag       960
     tttttcctcc caccccgata cctccagcgc ttggacgacc agattcggag tcgtgagcaa      1020
     cgggaagggg aaacgttcaa agattttatg ttagaccttc gagttctcat gcgccatgcg      1080
     ggctaccacg agatccaaga gctggatgtt gccggaacat cgcgccagag taccagawgt      1140
     atatccgccg tagcgasttc cgaaccattg gggaactggc tcagttgggc caccgagttc      1200
     gaggctgccc agaagcgaag cctcgagagg agcaattata accacgcccc tggaaatacg      1260
     acggcttacc gcctagagta gaagtaacga ggttactcct ggcggacgtg acgctcgccc      1320
     ggaagacaat tcaggtcccc cttctagtaa tgcccgccat gctagaacct ttaatcctag      1380
     ggatggattt tctagcttcc atcggcacca ctctccgctg tggtacggcc agcctcactc      1440
     tgtctcgacg aaggccggga gacggcgagc cgactaggcg taacgatccg gaacacggca      1500
     accaaggcaa ccactcggaa ccaccacctc gaccacgaag accacgcagc cacgaaacta      1560
     cgcataggac atcgagtaca ccatcaacgg aaccacggct aggcatagcc aatcacgaca      1620
     taggaccaca ggatgacagg ggtgctaatg cgcccgagga gccgcacgag acgccwggsg      1680
     kcaaggagga aagcacagag aacaccgagg aaagcacaga gaacaccgag gaaagcacag      1740
     agaacaccga ggaaaacmca gagaacaatg aggaaagcac agagaacacc gaggaaaaca      1800
     cagagaacac agagaacacc gakgaaaaca cagagaaaac cgaggaaaac wcagagaaca      1860
     cagaaaacga cgaggaaaac gcagagaaca cwcgagggag acccgaagag gagatcgaga      1920
     cccaggggtc tcaaccaaac aaccaggwgg accaggaacg tggctgcgag attgatccgc      1980
     aagcccaagc gttcctcgag gaacasctag cacaatttga aggaatggcg ggagtagcca      2040
     acatagcgga acaccggatc acgatgagga atgaccgccg attaaacaac tttattttcc      2100
     gaagaacccg gccatgcaac ggatcatcga cgagcaagtg gacgcgttgc tggagcaggg      2160
     atgtatcgaa ccgtcgcgta gcccgcacag tgcccctttg gtcctggtcc ggaagaaaac      2220
     cgggcagtgg cgcatgtgcg tggactaccg gcaactaaac gcaaaatcca tcccggacgc      2280
     acatccgttg ccgcgtatta atcacatctt agaacgactg aggaacgcaa aattcatctc      2340
     gaccctggat ctgcgcaatg gatattggca gatacccatg gccaaggaca gccgggcatg      2400
     taccgcattt acggtacccg gacgaggcct atttcagtgg cgagtcatgc ctttcggctt      2460
     gcattcggcc ccagcaacct ttcagcgtgc gttagatagt gtgatcgggc cggacctcga      2520
     cccggacgca ttcgcctatc tcgacgacat tattgtcatc ggagccagcc tggaggaaca      2580
     catggacaac ctgcgcaaag tcttcgagcg actgaggaga gccaacctgc gcatcaacca      2640
     ggaaaagtgc tcattcttca agaggaaact ggcctacctc ggacacgtga tcagcgacca      2700
     gggcattcac accgatccgg gcaaggtagc cgccgtacga aaccttagcc ctcccacgag      2760
     cttacgggag ctgaggagat gcctcgggat ggcctcttgg taccggcgat tctttcgcct      2820
     cagtggtcca gcccatgacg aacctgctaa ggaaaaacca acggtggaag tgggagacgg      2880
     agcaacagag tgccttcgac ctcctgaaaa gcctactgac agacgcaccc gtgctggcat      2940
     gcccagactt ctctgtcaag atgacactcc agactgacgc cagcaattac ggactcggag      3000
     gagtattgac ccaggaaatc gacggccagg aacgagttat tgcctacgtc agccgcaagc      3060
     tcgatgccgc ggaacttaat tactcgccca ccgaaaaaga gtgcttggcc atagtttggg      3120
     ggaatacgga aattgcgatg ctaccttgaa ggatatagat tcgatgtaat caccgaccac      3180
     ttggcactga aatggctgga ccaaatagaa aacccaaccg ggagaattgc tagatgggcc      3240
     ttagagctcc agcaatacca atacgacgta cattaccgcc gagggaagta taatgtagta      3300
     gccgacgccc tatcccggca acctctggag cgcttacaga gacttacgca agacgagcac      3360
     cagtgcaagt ggctacaacg gaagctgaag gaagtccggg acgacccaca gaagttcccc      3420
     gacttcatca tcgagaacgg agaactatat cgccacctcg gccaccgtcc agatgaccag      3480
     gattacgtac cctggaagct gtgcgtagca gccgaacacc gagcccggat tctacatgaa      3540
     tgccatgatg cacccacggc cggacatctt ggcgttagaa aaacaattat caggatctcc      3600
     cagaagtact actggccagg gatgtttcgc gatgtgcgac ggcacatacg tcagtgtatc      3660
     ccgtgccaga aatacaaggc agagcagcgg caacaagctg ggaagatgct aacgaggcag      3720
     gtcaacgagc cctttggcat attatgtgcg gatttcgtcg gaccgctacc tcgctcaaaa      3780
     gaggggaata ccacactcct cgtcttcttc gacaccttca ccaagtgggt cgaattgata      3840
     cccctacgaa aggcaaccac ggcgactctg atacgggcct tccgcgaacg gatcatcagc      3900
     catttcggag ccccgaggaa actagtgtgt gataacgggt cacaattcac cagcaaggca      3960
     ttcaaggact tcctcaggga aatgggagta gatctccaat ttaccgcccc atattgcccg      4020
     cgagagaacc cgactgagcg cgcgaaccgc acggtcaaga ccatgatcgc acaatacgtg      4080
     gagaktggac agaacacctg ggaccggttg ctaccagagc tgtcactcgc gatcaacacc      4140
     agtgtctcgg aatsaaccgg atgtagcccg gccttccttt tacaagctcs agaaccgcgg      4200
     ctgcctggat cctggtacga cagcgtaacc cccggaacag caacatcgcc ccagagccca      4260
     tcggagagag cggaccgctt gaaggaagtc tttcaaatcg tgcagaacaa tcttcaaaag      4320
     gccagccgag agcaggggag gcactataac ttgcgccgtc gaacttggaa gcccgagatg      4380
     ggatcattgg tcctcgtgcg gcagcaccat ctgtccaaag cggcagaagg gttcgcagcg      4440
     aagctcgccc cgaaattcga cggaccgtac aaagtggtcg ctttcccttc acctaatgtc      4500
     gtccgaatcc gcctaccckg tcagcggaaa ggacgacttg ctaatattgg tgacttaaaa      4560
     gcgtttcatt cttcttcccc aggtaactcc gacgatgwag acagcgagat ccccaaggaa      4620
     gacaccggcg atcaacccgg gccgtcccaa cgaggccaac cggccgacac aatcaacgag      4680
     gggtgatctt aagtgcctca accttccttt gtgacccact aacgtagaac tcattgtaaa      4740
     ctctaaaagt taggagattc ttttgctgct gcccatttta cccctgttgt taaaaatcaa      4800
     tagaactaag ttagtttagt cacctctttc acagaccaac catggacatg gacacaatcg      4860
     agctgtcatc cgacgatagc gacggaaggt ccacgcctcg attccagagc gatccgcagc      4920
     cgacgaccac acgcgaccct cggctacgtc cgggaacggc gtacgccggg aggtccaccc      4980
     ggtcatgccc gacgggaagg cgccagccag gtggccctgg aggagcgaca ccatcctcgc      5040
     caggacccag cgctcggaca cgatcccgct gggcagcgtc gagctgcaca caaacccacg      5100
     acgaagacga cgacgaaccg atgtcgcccc ccgctccgac cagaggagta tctccgttct      5160
     acacggacgc ggcaggacac cggacttatc aggcacccag gcagcgagcc cccagccggg      5220
     tcgccaggac gcaattgagg gagtacaacc cgtgcggacg cagccccgac cacccggaac      5280
     cgtccatcag ttcccacaac gaggaggaac aggcgcccta cgtggaagac gtcggcagtg      5340
     acgactccgg acgcgaggac caggagccct acgacgagac cgaggacgca tactcgaggg      5400
     atagccgcga agacgacgac ggtccccagg aaggtgtgat ccattacgtg tacactggcg      5460
     aggaccgcta cgggtatcac caggggtcct ggatctacct cttccggacg aactgggaaa      5520
     tggtccaagt ggaggcaccg tatcggccac ccgatgaccc aatcgtgtct tttccaacgt      5580
     cccccgtgca cctgtgcatt atggggcccg atgagaccaa cgagaccgag ggaaccgata      5640
     cccgaggcga cagacccaca gtcgacctca ccagtcccca agacgaggag atgggatcag      5700
     agctgcccac cacgtcctct ctgcaactcg ctccgaagta ctcgcacggg ccactggcga      5760
     tcgagccccg cgagacggtc gcttccccag ttgcgttcaa gcccccgcac caccctacgg      5820
     gtaaaacgat ggagtgggag tcgggtcagt gacgacgagg agagcaccgg acaacgcttc      5880
     cggcgcggag cctgcccccg ccgtggtgcg tcacgcaccc ccagcagccg cgcagccatc      5940
     gacacggtcc ccccaaggga accagatgcg gagactatcg ccgacagcgc acacccctcg      6000
     gccacaccca catcgagcgc ctcggacgtt tcaatggcaa tgtcccccac aaccttcgac      6060
     ctcctgctgg gacagatcgc gccagaaatg gagaacctgc gctgggagtc gaccaccgat      6120
     tgggacttgc acggacccaa ccacccgcag cccgaggaga cagcctcgaa cgatggccac      6180
     tcagactccg acgacgtccc aaccccggga cgcgagcgct acccgctccc ggatgggtgg      6240
     acgtgcaaca gcacggacgg acgagtccca gccgtcgtct ggcagaccat ctgcgcacga      6300
     caaccctccg cccggatgtc aaggcagcga ttccgagtcg cgacagacga aggctcgtac      6360
     caggtgacca tgaagcctac cggagctgga gccgtctctt ttcttccccg gaagtaagga      6420
     gggga                                                                  6425
//
ID   Gypsy-78_DEl-LTR repbase;    DNA;    INV; 1196 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_DEl-I;
KW   Gypsy-78_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1196
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7071-7071 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1196 BP; 294 A; 393 C; 243 G; 265 T; 1 other;
     tgtaacgccc taaatttagg gcgtacaaat cacgccactc cctccatata cattattacc        60
     ctagttttaa gtttgttatt agttataagc tcggacacgg agtccccccc cattgcgtac       120
     caaattaaag ttacaaaact cattaaaaac tagtattaat ttaagccagg acgcgcaccc       180
     aaaacacagc ccccctaacg cgttatcgca ctcatgaact cccgcgatcg atagcgcgat       240
     cgatagcggg gaactagttc agcgagcacg agacgcggct aaagtgcgat cgctgatttt       300
     tcgccctcgg cctttctttc gccctctttg gttttgactc tggtcgagta tagacgcgck       360
     cggaaaattc accccgagat aattaattcg aaaacgccac aggtatatct acaacgccat       420
     tcacgtaagc ccagtatccc tagtgtgagg gcagcagcca ggacccatac tgaataaagc       480
     ttgaaactag aaaagaaatc ttcgtgtgtt cttattgttt ccaacccctt ttcccacttc       540
     ctaaccttag aatcctcgta acctccgagt catccagagt tcctaacccc gcatcccgta       600
     gactccgcgc cctagccgga gtatagattc cctgcgcccg aggctccgcg ccctagccgg       660
     agtatagatt tccccgcatc ccagtaggct ccgcgcccca gccggagtat agattccctc       720
     gcatgcccgt aggctccgcg cccagccgga gtataatatc cctgaatccc agtaggctcc       780
     gcgcccagcc ggagtataga tcctcccgca tgccagtagg ctccgcgccc cagccggagt       840
     atagattccc cagcatcccc agtaggcccc gcgcccagcc ggagtacaac acccttagca       900
     tcctaaccga ctccgcgccc agccgaaaca tataaatttc gcccggcaga atcctcctcc       960
     gtggctaacc accaacgaat attcccgggt tccgcaccaa gtggcgagat cgtgcgaaca      1020
     gggtattccc aagttcccca ccaggcacgg aggttgccac gcgttctccc gtcttagccg      1080
     agactacaac cccccataca aattcctact acaggttcca cccttctata taaatttctt      1140
     gtacaggttc cctggccccg attgagattc taccccggcc agagaactgc attaca          1196
//
ID   Gypsy-78_LMi-I repbase;    DNA;    INV; 4475 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-78_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4475
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~81% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(231..890,1532..2530,2359..3216,3054..3425,
FT                 3429..4304)
FT                 /product="Gypsy-78_LMi-I_1p"
FT                 /translation="LRPVWXRLVPTARHVSAPFPPPFSGFDDSLEDWDSYE
FT                 KWLHNTSSLLVSLIWTCVKLFFCLGFLPAFISYCVSSPLSKNQRPYPLMKC
FT                 VVCCLLITSPVRMSLRPVWNFIGRGRSLISPIMHGQPNSMALVAAVCLLPL
FT                 HIRNPTRTTWFATLFCAWRQIARFVNVLFNLKTRLLLCFEYCQSFEVSRAA
FT                 GDQIEAWGDVAAVFRSAGCFQYCLAAISGSNLRCAQVFCTHQVPVALRDQV
FT                 KAELDRLQALQVIKPISSSEWATPLVIVKKPLGSLRLCGDFKVTVNAQSVI
FT                 DSYPLPRTDELLAMLAGSHSFSQLDLAEAYLQLPLDEDSKCLLVVNTPFGL
FT                 YQYQQLPFGVASTPAIFQRFLEQLLHPVPGCVNYLDNIVVTGSSPADHLRN
FT                 LRALFSTLQVAGLRCNLAKSHFFQPSIPYLGFEISSAGVRPLPDHVAAIVS
FT                 LPRPTSVKELQAFLGKIAYYHRFLPGAATVTHPLHHLLHKDVPFVWSADCE
FT                 CAFCTLKQQLVSAPCLTAYSLGQHLVLATMPLHVGWECLRINTLTSLNAPL
FT                 RMHQKLMCLLYLETATCVCSVLNCLFSGSTPCACYDASPCGVGVLAHKYSD
FT                 ESECPIAYASKTLTPTQQRYSQIEKEALAIIYALKKFHVYLYGVKFHLIMD
FT                 HKPLVSLFHPTASLPDRAAHRLQCWALFLSRYNYEIHFCPTAQHTNADALS
FT                 HLPVGPDPAFDREELLCFYLDTEAQATVDSFPLTSSLLSTAVASDPVLRQV
FT                 LHFVHEGWPDIPPRRASDPLWNYYSFRLHLSEYEGVLLLATEGQSPRVVIP
FT                 AALRARVLQMLHHGHGGHPARKLLLVGMCFGLAWTVTGGTPFGYGRSVAAC
FT                 GYSGGSPCSSVTDAASRAWGASRTKALARRHVFWPGMDSDIVCLVAACSQC
FT                 ASQQAAPRASLSPWPQPQQPWERIHVDYAGPFMNSYCFLLWMLIPTFPMFF
FT                 GALPCPRPLRTHCLRFLLLKDCRSPWFLIMAPSLRQRLFATFVFSWGFATS
FT                 RLLPFTPSRTVKLKDWCAPSKFRCGSMCSPPLSTMRCCISCPPTASRRWGI
FT                 AAPPNCFMAVNPGCCCTCCCRAAAGPWAAAAPLPARLRRLGAGFGRRPRWV
FT                 PGVVVACLGHRLCSVRTPDGMVRRHWDQLRPRAPAEAGSRSPPPPLPASES
FT                 SPQAPPLVPPAVPPPHPHGRLLLLLSACLCCPAATLPAAPPAEAGVPPRLP
FT                 SSPSGGTPHAVRCLIARAGRSAALCHSGRSAASSLSRLGLVSVPG"
XX
SQ   Sequence 4475 BP; 759 A; 1309 C; 1092 G; 1314 T; 1 other;
     catttattgg cgacgagtag tgttcggact tctgtgtgtt tattcggccc actcccctgt        60
     ctatggattc gcaaacagct gccacttcct cggactttca actccctccg tggggtcagt       120
     tacttcagac cgggttgcaa actatggtcg atacggttcg gcagctggta cagttacgtc       180
     ggctcaggcg gaccatttga actccattgc atctgttgtt acgtcgttga cttcggccag       240
     tgtggtakcg gttggttccc actgcccgac atgtttctgc tccttttcct ccaccatttt       300
     ctgggttcga cgactctttg gaagactggg actcttatga gaaatggttg cacaacactt       360
     cctcactttt ggtgtctctg atatggactt gtgtaaagct ctttttctgt cttggatttc       420
     tccccgcatt tatcagttac tgtgtcagct cgcccctctc caagaaccag cggccttatc       480
     ctttgatgaa atgtgtcgtt tgctgtctgc ttattaccag ccccgtacgc atgtcattgc       540
     ggcccgtgtg gaattttatc ggtcgcggaa gaagcctaat cagtcctatc atgcatgggc       600
     agccgaactc catggcctta gtcgccgctg tatgtttgtt acccctacac atcaggaatc       660
     ctacgcggac gacatggttc gcgacgctat tctgcgcctg gcgccagatt gcgaggttcg       720
     tcaacgtgct cttcaatttg aaaacccgac tcttgctatg ttttgaatat tgtcagtcat       780
     tcgaggtttc ccgtgctgct ggggatcaga ttgaggcatg gggggatgta gctgctgtct       840
     tcagatcagc tggctgcttc caatattgcc ttgcagccat cagtggctct tgataaacag       900
     tgtcaacaga ctcccagtgt ggacagccag tgcgccacaa tctcttcctt cttgtccgtt       960
     ttgctttgtg gatcagacgg gcgcctgccc taagcgttgg gttgtttgca acagttgtct      1020
     aaaaaggcac atggcctctg tgtgccactc ccgccgacat ggacatggac gttaattttg      1080
     tgggaagttt gcaggctcgc cctgataagt tgttcatcga tgttcagttg tttgacaaat      1140
     ttgtcacctt gcaagtagac atgggggcct cgtttctctc ctgaattatc acacatacgt      1200
     tcacctgggt tcgccgccgt tgtcgcctgt tgatcgtcac ctaaaaaact acagtcatca      1260
     gtgcattcct gtcctgggtc agttcacggc tcctacggct tacaaatctg tggttcgccc      1320
     tgtgactttt tggtggtcga cgataccgca gctgctaaca tttttggtct tgatgctttc      1380
     aatgtttttg gtttctctat ttcagactct gttaacctgg tctctgattc tgttcctttt      1440
     catgaccttg agttgctttg tcaggaattt ttgtccttgt ttgctgacgg cttaggttgt      1500
     gctactgctt ttaccgcaca catcaccatg aaacctacgg tgcgcccaag ttttttgcac      1560
     ccaccaggtt ccggtggctc tgcgggacca agtcaaggcc gaactcgacc gcctgcaggc      1620
     tttacaggta attaaaccta tttcctctag tgagtgggct acccctcttg tgattgtcaa      1680
     aaaacccttg ggttccttac gtttatgtgg cgactttaag gttactgtga atgctcagtc      1740
     tgttattgat tcctatcccc tgccacgcac tgatgaactg cttgctatgc tcgctgggtc      1800
     ccactctttt tctcaattgg atttggctga agcttatcta caacttccgc tggacgaaga      1860
     ctctaaatgc ttgttggttg tgaatacccc ttttggtctt taccagtacc agcaactgcc      1920
     gttcggtgta gctagcaccc cggctatttt tcaacgtttt ttggagcaac ttttgcatcc      1980
     cgtccctggc tgtgttaact atttggacaa tattgtggtc acggggtctt cccccgctga      2040
     ccatttacgg aacttgcgtg cccttttctc tactctccag gtggcgggtc ttcggtgtaa      2100
     tttggccaag tcacatttct ttcaaccgtc tattccatac cttgggtttg agatctcttc      2160
     tgctggggtc cgcccccttc cggaccacgt ggccgccatt gtttccctgc ctcggcccac      2220
     atcggttaaa gagttgcaag cctttctggg taaaatcgca tattaccata gatttctgcc      2280
     cggggctgct acggtcacgc acccgctcca tcaccttttg cataaagatg tgccttttgt      2340
     ctggtctgcg gattgtgaat gtgccttttg taccttgaaa cagcaacttg tgtctgctcc      2400
     gtgcttaact gcttattctc tgggtcaaca ccttgtgctt gctacgatgc ctctccatgt      2460
     ggggtgggag tgcttgcgca taaatactct gacgagtctg aatgccccat tgcgtatgca      2520
     tcaaaaactt tgacgcctac acagcaacgt tattcacaaa ttgagaagga ggcattggcc      2580
     attatttatg ccttgaaaaa atttcatgtg tacctgtatg gtgtgaagtt tcatcttatt      2640
     atggatcata agcctttagt gtcacttttc caccctactg catccttgcc ggacagggca      2700
     gctcatcggc tgcagtgctg ggccctgttt ctttctcggt acaattatga gattcatttc      2760
     tgccctacgg cccagcacac taacgcggat gccctgtctc acctccctgt cggacctgat      2820
     cctgcctttg accgagagga actcctatgt ttttatctcg atactgaagc tcaggctact      2880
     gtggatagtt ttccccttac ttcatctctg ttgtcgaccg ctgttgcatc cgaccctgtg      2940
     cttcgacaag ttttgcactt tgttcacgaa ggttggcctg acattcctcc gcgccgggca      3000
     tccgaccctc tgtggaacta ctattctttt cggttacatc tgtctgagta tgagggggta      3060
     ctccttttgg ctacggaagg tcagtcgccg cgtgtggtta ttccggcggc tctccgtgct      3120
     cgagtgttac agatgctgca tcacgggcat ggggggcatc ccgcacgaaa gctcttgctc      3180
     gtcggcatgt gttttggcct ggcatggaca gtgacatagt gtgcctcgtg gccgcctgct      3240
     ctcagtgtgc ttcgcaacag gcagccccac gtgcttctct ttctccctgg cctcaacctc      3300
     aacagccttg ggaacgtatt catgttgatt atgcgggccc attcatgaat tcttactgtt      3360
     ttttgttgtg gatgcttatt ccaactttcc ctatgttttt tggtgcccta ccatgtccac      3420
     ggccgtgact acgcactcat tgtctaaggt ttttgctatt gaaggactgc cgctcacctt      3480
     ggtttctgat aatggccccc agtttacgtc aacggctttt cgcgactttt gtgttcagtt      3540
     gggggtttgc cacatcacgg ctcctccctt tcacccccag tcgaacggtg aagctgaaag      3600
     actggtgcgc accttcaaag ttcagatgcg gaagtatgtg ctctcctcct ctgtcgacga      3660
     tgcggtgctg catttcctgt cctcctaccg cttcacgccg gtgggggatc gcagccccac      3720
     caaactgctt catggccgtc aaccccggat gctgctgcac ctgctgttgc cgggccgcgg      3780
     caggcccctg ggccgccgca gcaccgctac cagcccggct ccgccgcctg ggcgcggggt      3840
     ttgggcgccg cccccgctgg gtgccgggcg tcgtcgtggc ctgcctaggc caccgcctct      3900
     gctcggtgcg cactcctgat ggcatggtgc gccgtcactg ggatcagctg cgcccccggg      3960
     cgcctgcgga ggccgggtcg cggtctccac ctccaccact gccggcctcc gagagttcgc      4020
     cgcaggcgcc gcccctggtg cctcccgctg tgcctccgcc gcaccctcat gggcgcctct      4080
     tgctgctcct gtcagcgtgc ctctgctgtc ctgctgccac gctgcctgca gcgcctccag      4140
     ctgaggcggg cgtcccaccc cgcctgccgt catctccttc tgggggcaca ccccatgctg      4200
     tccgatgcct catcgcccga gcgggaagat ctgccgccct ctgccattcc ggtcgatctg      4260
     cagcctcctc tctctcccgt cttgggctcg tctcagtccc tgggtgactc tcgtgagggg      4320
     gcaagctgcc ctcagcccca catcaacatc actaccaccg tatgcccagt gctggcccgc      4380
     agcctcctga agagccacca cccgttctgc aactccctga cttggattcg ttcatcacca      4440
     acagacattc ctccctaagg ggggagagtc ctgta                                 4475
//
ID   Gypsy-78_LMi-LTR repbase;    DNA;    INV; 233 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-78_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-233
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~80% identical to the consensus.
XX
SQ   Sequence 233 BP; 60 A; 63 C; 53 G; 56 T; 1 other;
     tataactctg acacacgcaa tcacaaatag cgcgcgccac aaaatgtgtg catgaccggc        60
     tgccagatgg tggcccgaac cattgcagca ccaccacagt tccgcggcga ttaggcccat       120
     gcggccgggc tcgtgggcca cttgtgtgtt aacttccaaa ctgtgtacta ccacatgtac       180
     ctaacttgtg ataatkgtgc ttgttactat taaatgtgtt gcaagttaca aca              233
//
ID   Gypsy-79_AA-I repbase;    DNA;    INV; 4325 BP.
XX
AC   supercont1.242;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_AA_;
KW   Gypsy-79_AA-LTR; Gypsy-79_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4325
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.242; Positions  946357  942033.
XX
CC   'TTAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2594..4324
FT                 /product="Gypsy-79_AA-I_1p"
FT                 /translation="MASFEILREKLIAEPVLKIYSPFARTELHTDASALEF
FT                 GGVLMQEQSDGVLHPVMYYSKRTDSHESKLHFFELETLAVVNSIKRFHIYL
FT                 QGIKFTIVTDCIALKETLNKKDINAKIARWEIFLSEYDYDIIHRSSSNMKH
FT                 VDALSRLPIICALGNENNSFERALLASQMLDSKIEEVRAQLENREDKNYEL
FT                 RDGVVYRKSKDNKIMFYVPQNMISRILKMYHDDFGHFGVEKVYELINKSYW
FT                 FPNMKEQIKKYINNCLKCIVYSKKNFKKDGPLNIVEKGNRPFHTIHIDHYG
FT                 PITLRNCNYRYIFVVVDAFTKYLKLYPCKTTNTSEVIKHLKHYFSAYSIPD
FT                 QIISDRGSCFTSNSFREFYVECEIKHILIATACPRANGQVERFNRVLTPVI
FT                 AKLVESYPTRGFGPILLDAEHFINNTFCRSIGNTPSQVLFGINQKKSTISI
FT                 IERSINENKDIERDLIKVREKAIAINRAIQIYNKKKYDSECKINTKYQEGD
FT                 LVYIPHHVIPGSSSKLQAQFKGPYIVRKTLPNNRYVVSDVNGIQLTRVPFT
FT                 GVFDPVNMKLWDMKNELNAHRDDVNVRMAE"
XX
SQ   Sequence 4325 BP; 1580 A; 604 C; 844 G; 1297 T; 0 other;
     attcagaagt gggatgatga tcacgcgcga tttttcaaga cgaggagctg atgatgagaa        60
     tttttcaacc gtcaaaggcg tttcgaatga aaaccaaatg aaattgtcaa acccaagaaa       120
     tatagacggc gatactgcag aagatattga gccgaaaccg attcaacggt tgttggtgaa       180
     cgtggagttg ttacgaatgt tgtgaacaag aatggagttg gaagtaattc aagatcgatg       240
     atcggcagta cgggtacgaa cagcgttcaa ctatttttac atcctgaaga tgttcgtagt       300
     ttgattcctg aattcacccc ggaaaagatc actgtacaga aatggctaag aaaaatcgaa       360
     aatttgaaga acgtgtatag ctgggaagaa cgagtggcgc ttcattatgc aacaatatga       420
     ctgggtacgg ttcctcggat ttggtacgaa ggtgttgaac aagctgtcga cgactggaat       480
     gattttaaac gaagaatagt acaggcgttt ccatcaagag tcgatgaagt ggatatccat       540
     agtactttga taagaagggt gaagcaaccg gacgaaacat acgagaagtt tatttatgac       600
     gttgtggcta tagcatggtg gacctaactg atgcagttat tatcaagtat attatcaatg       660
     gcattccgaa ctcaaatttg aggctggcgt tgagtacagc tggacataaa tctgttaata       720
     cattgttgga agcaatttta cggtacgaaa atcaaacaaa tatgcaatca gcggaaggtg       780
     tcaaattttc aaaacatttt caagatcatg tgcgaatgaa taataaaaat cgttgctgct       840
     acaactgcgg agaacgtgga catttggcaa gaacgtgctt ttggaaaaat taacaacgat       900
     ttcaaggaag tggcagtaat cttcgacaac gttatgatgg agatgcaaga tacagagctt       960
     cttactcaag caacgatcag caaattaata gtttaggagg agcaggttct cacgacgatc      1020
     atggtggaga aatatttaga aaccaacagc ataggagcga tggagaaaac caacgaaaac      1080
     aagagcgtta cacgatgaag gaacctaatt tgatttcggc cataggagaa accgatgcag      1140
     accaccgagg aatgaatact gatgattttg agcgttctcg aggtagtatt gagtttagag      1200
     gtaggaatat tctagaaaaa tcatttttca atattttagt tagattttca agtttttata      1260
     aagaatgttt aactttattt gacacaggga gccccatttg tttgataaaa agtagcgttg      1320
     ttccaagtaa ttctaaaatt tttaaatatt ctgaacaaac atactccggc ctaaataatt      1380
     caaagattga tattttaggg acatttgata cagaaattgt tattaataat tatatttaca      1440
     aattgcagct taaaattgta aaagactcta ccatggaacc gatgtgcatt ttggggtcgg      1500
     acttcgtaaa acggaataac ttgttggctg aatatgacgg taacgcgata gtttttggta      1560
     agaaaaatgg agaagatagg aaacttttga acgtggttac aatagaagat gatattcgtc      1620
     cggatattta tgatgtggag gtaagctcag gcactttctt gaatactgat ttggatcaat      1680
     tagatatatg agatacaagt attcctttta tataagttac agatgtcaga tctcttttta      1740
     acaacgtgta taaaaacgga ttaagaccag ttaaacctaa aaactcgtat actatgaaag      1800
     ttgaattgca aaataacaaa aattttaatt gtccaccacg tcggttgtcc tattctcaga      1860
     agttagaagt agaatcgcaa ataaataaac ttttacaaga aggagtaata caagaaagta      1920
     attcacctta cgctagtaga atagtattgg taaaaaagaa agataattcg tggagaatgt      1980
     gtgtggatta tagagaatta aataaaatta cagtaaaaga taggtatcca attccacaca      2040
     ttgaagacca tttagatagc ctgagaagta agaaatattt tagtacttta gatctcaaaa      2100
     gcgggtatca tcatcttttg attgatgaaa gctctcaaaa gtatacagca tttgtaagtc      2160
     atatggatca gtttgaatat aagagagtac ctttcggcct ttgcaacgca ccttcagcat      2220
     ttatgagatt tattaataca atttttaaag atttaattaa aaaaggcgtg ataagaattt      2280
     atatcgacga cattattatt gcaaaatctt agtggaaaac catttacaat tacaattaac      2340
     taaatgtaaa tttttgaaat ctaaagtaga gtatctcgga tacaatatta attcggaagg      2400
     aataagtcca agtgagaaac atgttgaatg cataaaaaac tttccagttc ctaaaaatgt      2460
     gcatgatgtt cataaattta ttggattagc aagttacttt ataaaattta tcccaatttt      2520
     ttcagttatt gcaaaaccac tttatgattt agtaaaaaag gataaaaagg atttcaggtt      2580
     tgcaaaagag gaaatggctt ccttcgaaat tcttcgagaa aaacttattg cagaaccagt      2640
     attaaaaatt tattctcctt ttgctaggac tgaactgcat acagatgcaa gtgctcttga      2700
     attcggtggt gttttaatgc aggaacaatc agatggagtt ttacatccag taatgtatta      2760
     tagcaaaaga acagattcac atgaatcaaa gctacatttt tttgaacttg aaacattggc      2820
     agtagtaaac agtataaaga gatttcacat ttatttacag ggaattaaat ttaccatagt      2880
     tactgattgt attgcattga aagaaacact aaataaaaag gacattaatg cgaagattgc      2940
     tcgatgggaa atttttcttt ctgaatacga ctatgatata attcaccgta gttcttcaaa      3000
     tatgaagcat gtagatgcct tatcacgttt gccaattatt tgtgcattag ggaatgaaaa      3060
     taatagtttt gaaagagcat tattggctag ccagatgttg gattctaaaa ttgaagaagt      3120
     tagagctcag ttagaaaatc gcgaagataa aaattatgag ttacgagatg gagtcgtgta      3180
     taggaaaagc aaagataata aaataatgtt ctatgttcca caaaatatga taagtcgaat      3240
     tttgaaaatg tatcacgatg atttcggcca ttttggtgta gaaaaagttt atgaacttat      3300
     taacaaatca tactggtttc caaacatgaa agagcaaatt aagaaataca taaataattg      3360
     tttaaaatgt atcgtatatt ctaagaaaaa ttttaagaag gatggccctt tgaatatagt      3420
     agagaaagga aatagacctt ttcatacgat acacattgac cattatggac caataacgct      3480
     aagaaattgt aattatagat atatttttgt ggtagtagac gcctttacaa aatatttaaa      3540
     actttatcct tgtaaaacaa caaatacgag tgaagtaatt aagcatctta aacattattt      3600
     tagtgcatat tcaatacctg atcaaattat ttctgatcgt ggaagttgtt tcacttcgaa      3660
     tagttttaga gaattttatg tcgaatgtga aataaaacat attttaatag ctactgcatg      3720
     tccaagagca aatggtcagg tagaacggtt taacagagtt ttaacaccag taatagctaa      3780
     acttgttgaa agttatccta caagaggttt tggtccaatt ttattagatg ccgaacattt      3840
     tattaataat actttctgtc ggtcaatagg taatacccct tcgcaagtac tatttggaat      3900
     aaaccaaaag aaatcaacta ttagtattat cgagagaagt attaatgaaa ataaagacat      3960
     tgaaagagat ttgattaaag ttagagaaaa agcaattgcc ataaatagag caattcaaat      4020
     ttacaacaaa aagaaatacg actccgaatg taagattaac acaaaatatc aagaaggtga      4080
     cctagtttat ataccacatc atgttatacc tgggagttca tctaagttac aagcacaatt      4140
     caaaggtcct tatattgtca gaaaaacgct tccaaataat cgttatgttg ttagtgatgt      4200
     taatggtatt cagcttacac gtgtaccctt taccggagtt tttgatcctg tgaatatgaa      4260
     gttatgggat atgaaaaacg aactaaatgc acatcgggac gatgtgaatg tcaggatggc      4320
     cgagt                                                                  4325
//
ID   Gypsy-79_AA-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   supercont1.242;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_AA_;
KW   Gypsy-79_AA-I; Gypsy-79_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-157
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.242; Positions  942032  941876.
XX
SQ   Sequence 157 BP; 53 A; 26 C; 30 G; 48 T; 0 other;
     tgtaggagat ttaagtaggc aatgaggtat tatataattg aagcaggcta tgattagcag        60
     aatagggaca ttcgatgttt tgttattcat taatcctcga gacgccaaat atacaagaca       120
     aatcactcaa agctctccac tgtgtttcaa tacttca                                157
//
ID   Gypsy-79_CQ-I repbase;    DNA;    INV; 4214 BP.
XX
AC   AAWU01022223;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_CQ_;
KW   Gypsy-79_CQ-LTR; Gypsy-79_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4214
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 537-537 (2011).
XX
DR   GenBank; AAWU01022223; Positions    1773    5986.
XX
CC   Positions [3342-3818] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..1774
FT                 /product="Gypsy-79_CQ-I_1p"
FT                 /translation="MATVEELCENFTKIGLVRECERLGLPTNGGKNEMALR
FT                 IIDHQAAANGKDNDDDGSQHDDDDGSVHDEQNDENESDADENDDSHADSDD
FT                 ATVRGNDANDEREARRNTHQRPQVYSFRDMEESIESFGAEDGEDVKVWLQQ
FT                 LETVAESARWTGEHKMIMLRKKLTGTARRFVFSLRDVSSYAKLKKALIDEF
FT                 APFVRASDVHRTLGNRKKKPTETTRDYIYEMQRIALVIDLDEPSLCEYIVD
FT                 GITDDEFHRSLLYEAQTIRHLKEKLLNYEKVTKNSRKKTKPDEKREKPRTE
FT                 NKASVKSDPKKHCFNCGDASHVASECPQKSDGPKCFNCNAFGHLSKECTKN
FT                 KTKQKEKKVNVVEKVNGDKPGVLLNLFGREFSAIVDTGAEISLIRKDLWTD
FT                 LAENGVQMRKSTMKVRGFGGDVRVVCGEVALTATIGEEEFPIRFYVVPNEA
FT                 IDMQVLIGMDFLSGVDYSISPGEVRVKKYRPSDADAKWIRRVAEYVAEDEV
FT                 TVPYQYRDEVLELIENYTPEKPVVAANQLTITLLDNDVVCENPRRLAQLEK
FT                 EVVKKQNQ"
FT   CDS           1917..4196
FT                 /product="Gypsy-79_CQ-I_2p"
FT                 /translation="MPNVEEQIDQLSEARVYTTLDLKNSYFHVPVEEKSRK
FT                 YTAFVTSCGQYEFLRAPFGLCTSGSGFGRFISAVLKEFIHDGSVMAFVDDI
FT                 IIPTGSEEDGLKVLKRVLEVAAKAGLLFNWKKCVFLQRRVEYLGYTIYDGR
FT                 VEPAPAKIEKLKQFPQPTTAKQLQRFYGLASYFRKFVPSFAGIARPLSDLL
FT                 KKDKFAQFDDAAVYSFNRIKEILASYPVLRIFRQDGDVEVHTDASKTALAG
FT                 ILMQRAEDDGKFHPCYYFSRLTSGAEKNYHSFELEALAVVESVKKFRCYLL
FT                 GRPFKIITDCMAFKDAVKKKKLNTRIAKYVVALSEFRYEIDHRPGEKLPHV
FT                 DALSRADVLVVSAPIVAKIRAAQQEDDRGKALLTALQQNDSVDGFTTSNGI
FT                 LYEGEAESRRLYVPESMETEIIRSAHEQGHFGVRKTKERIKADYYISGLED
FT                 KIKRCIATCVPCIVGEKKRGKPEGELCPIPKGDVPLDTLHVDHLGPMPSTR
FT                 KSYGHILTVIDAFTKFVWLFATKSTTAEEAVKKLRVITDTFGNPRRIICDR
FT                 GAAFTSGFFTKFCDEEGIELHTIVTGVPRGNGQVERVHRVIIPMITKLSVD
FT                 NPEEWFKHVAVVQKCLNNSWQRAINMTPFELLTGVKMRTKEDAVLHELLLK
FT                 EVQDSFTDDRNELRMAAQQSIQKMQEENRNYYNLRRKPYVEYKIGDMVAIP
FT                 KTQFGVGQKVKPRFFGPYEITGVLPNNRYEVRKLDDETEGPKKTSTAGDQI
FT                 KPWTLPGRK"
XX
SQ   Sequence 4214 BP; 1133 A; 1020 C; 1282 G; 779 T; 0 other;
     tgggggctcg tccgggaagc gagttaatgt gaaaattacg cgaagtgcgc gaaatcgtta        60
     caaaattcgc gaaaaaagac tctgaaagtg acgccagccg aacgacaaga tggcgaccgt       120
     cgaagagttg tgtgaaaatt tcaccaagat tggccttgtg cgcgagtgcg aaagactagg       180
     cttgccgacg aacggcggca agaacgagat ggcgctacga atcatcgatc atcaagcggc       240
     tgcaaacgga aaggacaacg atgacgacgg cagccaacac gacgacgatg atggttcggt       300
     ccacgacgag cagaacgacg aaaacgagag cgacgctgat gagaacgacg actcacacgc       360
     cgacagtgac gacgccaccg tgagaggaaa cgacgcgaac gatgaaagag aggcacgacg       420
     aaacacacac caacgaccgc aggtgtattc gtttcgcgac atggaagaga gcatcgaaag       480
     tttcggtgcc gaagacggcg aagatgtgaa agtgtggttg cagcagctcg aaacagttgc       540
     ggagtcggct cgttggactg gagagcataa aatgattatg cttcgcaaga aattaaccgg       600
     cacggcgcgt cggtttgtgt tctctcttcg ggacgtcagc agctacgcca agttgaaaaa       660
     ggcgctcatc gatgagtttg ctccgttcgt gcgggcaagc gacgtccacc gcacactggg       720
     aaatcggaag aagaagccga cggagacgac gcgagactac atctacgaga tgcagagaat       780
     cgcgctggtc attgacctcg atgagccaag cctgtgcgag tacatcgtgg atggaatcac       840
     cgacgacgag tttcaccgct ctctgctgta cgaggcacaa accattcgcc acctgaagga       900
     gaagctgctg aactacgaga aggtgacgaa gaactcccgc aagaagacga agccggacga       960
     aaagagagag aagccgcgca cggagaacaa agcaagcgtc aaaagtgacc cgaagaagca      1020
     ctgcttcaac tgcggcgacg cctcgcacgt cgcatcagag tgcccacaga agagcgacgg      1080
     accaaaatgc ttcaactgca acgcttttgg tcatctgtcg aaggagtgca cgaagaataa      1140
     gacgaagcag aaggagaaaa aagtgaacgt ggtggagaaa gtgaacggcg acaagccggg      1200
     cgttttgctg aacctgttcg ggcgcgagtt ttcggcaatt gtcgacacgg gagcagaaat      1260
     ttcgttgatt cggaaagatc tgtggacgga tctcgcggag aacggcgtcc agatgagaaa      1320
     gtcgacgatg aaagtgcgcg gattcggcgg tgacgttcgt gttgtgtgtg gtgaggttgc      1380
     tctcacagca acaatcggtg aagaagagtt cccgattcgc ttttacgtcg tgccaaacga      1440
     agcgatcgat atgcaggtgt tgatcggcat ggactttctc agcggcgttg attattcgat      1500
     cagcccggga gaagtgcgtg tgaagaagta tcggcccagc gacgccgacg cgaagtggat      1560
     tcgccgcgtt gcggagtacg tcgcggaaga cgaggtgacg gtaccgtacc aataccgcga      1620
     tgaagtgcta gaactcattg agaactacac gccggagaag ccagtggtcg ccgcgaatca      1680
     gctgacgata acgttgttgg acaacgacgt tgtttgtgaa aacccgcgac gtctggccca      1740
     gctggagaag gaagttgtga agaagcagaa tcagtgagct cgaggagggg atcatccagc      1800
     agtcggaaag tgaatacgcg agtccagtcg tagtggttcc gaagaaggac ggatcgtacc      1860
     gtgtgtgtgt tgattaccgg gagatcaaca agaaagtagt gcgcgataag ttcccgatgc      1920
     cgaacgtgga agagcagatc gaccagctgt ccgaagcccg cgtgtacaca acgctggacc      1980
     tgaagaactc gtactttcac gtgcctgtcg aagagaaaag ccggaagtac acagcgtttg      2040
     tgacaagttg cgggcagtac gagtttttgc gtgcgccgtt cgggttgtgc accagtggaa      2100
     gtggatttgg acgattcata agtgcagtgt tgaaagagtt catccacgac ggaagtgtga      2160
     tggcgtttgt ggacgacatc ataattccaa cgggatccga ggaagatgga ctaaaagtgc      2220
     taaaacgagt gctcgaagtg gctgcgaagg cagggctgct gttcaactgg aagaagtgtg      2280
     tgttcctgca acgtcgtgtg gagtacctcg gctacacgat ctacgacggc cgagtggaac      2340
     cagcaccagc gaagatcgag aagctaaagc agttcccgca gccgacgacg gcgaagcagt      2400
     tgcagcgatt ctacgggctg gccagctact tccgaaagtt cgttccgtcg ttcgctggca      2460
     ttgcccgccc cctgtcggat ctcctgaaga aggataagtt tgcccagttc gacgacgccg      2520
     cagtttactc gttcaaccgc atcaaagaaa tcctggcaag ctacccagtg ttgaggatct      2580
     tccgacaaga cggtgacgtg gaggtgcaca cagacgccag caagacggcc ctcgctggta      2640
     tcctgatgca acgcgcagaa gacgatggca agttccaccc gtgctattac ttcagccgac      2700
     tgacgagtgg tgcggagaaa aattaccatt cgttcgagtt ggaggcgttg gctgttgtcg      2760
     agtcggttaa gaagttccgt tgttacttgc tcggccggcc attcaagatc atcaccgact      2820
     gtatggcgtt caaggatgcg gtgaaaaaga agaagctcaa cacacggatc gccaagtacg      2880
     tcgttgccct gtctgagttc cgctacgaga tcgatcaccg ccctggggaa aagctgccac      2940
     acgttgacgc gttgtcgaga gcggatgttt tggttgtgtc tgcacccatc gtcgccaaaa      3000
     tccgtgcagc acaacaagag gatgaccgag gcaaagctct cctgacagcg ctgcagcaga      3060
     acgattccgt cgacgggttc actacgagca acggtattct ctacgaaggc gaagctgaat      3120
     cgcgacgact gtacgtgccc gaatcgatgg aaacggagat catccggtct gctcacgagc      3180
     aaggccattt cggagtccgg aagacgaagg agcggatcaa ggcggactac tacatctctg      3240
     gcttggagga caagattaaa cgctgcatcg caacgtgtgt tccctgcatt gtcggcgaga      3300
     agaaacgagg aaagccggaa ggtgagctgt gtccgatccc gaaaggagac gttccgctgg      3360
     atacgctgca cgtggatcat ctaggaccga tgccctcaac gaggaagtcg tacgggcaca      3420
     ttctaacagt cattgacgct ttcacaaagt ttgtctggct gttcgcgacg aagtcaacga      3480
     ccgcagagga ggccgtgaag aagttacggg tgatcacaga cacgttcgga aacccacgcc      3540
     ggatcatctg tgatcgggga gcagctttca cgtcgggatt cttcaccaag ttctgcgacg      3600
     aagaaggcat cgagctacac acgatagtca cgggggttcc tcgtggcaac gggcaagtcg      3660
     aacgagtgca tcgcgtcatt atcccgatga tcaccaagtt gtccgtggac aacccggagg      3720
     aatggttcaa gcacgtcgcc gtggtccaaa agtgtttgaa caacagctgg cagcgagcga      3780
     tcaacatgac cccgttcgaa ctgttgactg gtgttaagat gcgaaccaaa gaagacgccg      3840
     tgctccacga gttgctgctg aaggaggtcc aagacagttt caccgacgac cggaacgaac      3900
     tgcgaatggc ggcgcagcag agcatccaga agatgcagga ggagaaccgg aattactaca      3960
     acctacgccg gaagccgtac gtggagtaca agatcggcga tatggtggct atccccaaga      4020
     cacagtttgg agttggccag aaggtcaagc cgcgattctt cggaccgtac gagatcaccg      4080
     gtgttctgcc gaacaaccgg tacgaggtca ggaagctgga cgacgaaact gaagggccga      4140
     agaagacgtc gactgcagga gaccagatca aaccgtggac acttccgggc cggaagtgat      4200
     gtcaggaaag gccg                                                        4214
//
ID   Gypsy-79_CQ-LTR repbase;    DNA;    INV; 185 BP.
XX
AC   AAWU01022223;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_CQ_;
KW   Gypsy-79_CQ-I; Gypsy-79_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-185
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 538-538 (2011).
XX
DR   GenBank; AAWU01022223; Positions    1588    1772.
XX
SQ   Sequence 185 BP; 50 A; 46 C; 38 G; 51 T; 0 other;
     tgtaggacga tcgaggcacc cctcggttcc gaacccgagg tctagagaga aaattttgtg        60
     ctgctctcgg cagttagcac tcgaccgcgt accgacgtag acgtggaata aaccgcaatt       120
     aaatcggaca aataaagcta cgtttttgta ttttccatta attctaaact cttccctttt       180
     ctaca                                                                   185
//
ID   Gypsy-79_DEl-I repbase;    DNA;    INV; 5633 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_DEl-I;
KW   Gypsy-79_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5633
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7040-7040 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 5633 BP; 1767 A; 1063 C; 1277 G; 1509 T; 17 other;
     caaataagaa gcttaatgtt agtcaaaaag tatwtkggga attccatttc caagtacaga        60
     aaccctagga accgaaacca ccgagaagtc tgtgtatttc aaagtgcagg acgctaggag       120
     aagcttttgc ttcacggtat tgctttacta tttttgttat ttttttttgg gtagattcag       180
     cttaagctta gtttcatttc tcagttgttt gaggcwtact ataaatttgt tgtttggaga       240
     cgcggccaca gtccgagagc ttacggattg ggacgaccac acaaatctag gaaccagcgc       300
     aatctgcaga aatcggaatt aacatgaatc agaaattttc tgtgaattaa ggtaaagaga       360
     actaggtctc taggaatcgc gattgcattt cgagttctta cggaatagtc gaccagaacc       420
     aaccgttact ttatacctcg ttttcagcaa tttttcgtta aactcgtttc aaaaagctga       480
     tagtctatgc taggaaatgc agagtattgg agagacttcg atctctgacc agtgtaggaa       540
     acgtcacttg agaggcaaga acacaaaaga attttgattt aattgattta atttgacaag       600
     tgatcaagat ataattagga gtattttatg taacaagcaa gcagttgtaa aaacaaacac       660
     ggaccagagt aaatcaatat ttttgtagcc aatttttaaa aattttgtcg aaaatgtctg       720
     tacgtcacag taatctcgat ttgtcactcg cggtggacgc tgagataaca tcctgtacaa       780
     tttgtacaca accattgatc gcgaacgatt taacagcatc tacgccgtgt ggtcatacat       840
     tccaccacca gtgtatcaga gattatgtgc ttgagtcgag tggatgccca gtttgcaatc       900
     gtgagtgcac ggtgcaacaa ttatctttgt caaacaacaa cctgttagca gaattgtcag       960
     ctgctgatag aaggacagga gaagttaatg cggcaaacaa tattttaccg gccggcagaa      1020
     aacgcaagta gaggtagagc aggcggtaga agaggtagaa atgcaggaca tcagagaggt      1080
     acwgcactac gtgctggaat gacacttagg tcgaaccgaa accagctaga ggatcgccat      1140
     gagcgaagtt tagacacaga ctcagtggta gatgtttcta gagcggaaaa tttggaggat      1200
     atagagagag tagttcgcac tgctatgcaa gcgcagcagc aaagctttag acaagagctg      1260
     tctgagctaa ttagaacgca aatagcgagt ctacagattg gtagttcagt tcaaactccg      1320
     aataggaggg tgaccgataa tcaaggacga ccagcggaag caaattctgc aggaactgtg      1380
     tatcaggata ttcgtctgaa tactcagcgt gtcgataggt caatttcttc gattcagcca      1440
     gataaggtgc cgaatattat tcagagctgg cacatcaagt ttgatggatc caaggaaggt      1500
     ttacaggctg aggaatttct ttatcgagtg caagcattag ctagacagaa tttaaatgga      1560
     gatcgtcaac tgtgcgataa tttgcattta tttttcgtcg gcaaggctag tgaatggtac      1620
     tggagatttc accggacgta tcatcaattc aattggatag aattttgtag ggagttccgt      1680
     aataagttta aagagagtga taccgatatg gatatttggg aatcaataaa tagcagacgt      1740
     caagcagata aagagccatt tgaagaatat caatttcaag tggaaaagct tgttgctcgt      1800
     ttgagtaacc caatctcaga agaatccttg gttagacttc ttatacggca ttctaagcct      1860
     tctcttcagt atgaacttat gcatttacgc ataaacactt tagctagtct tagagaagaa      1920
     atcaggactc acgagcagtt ttgcaagcaa attaaagctc aaccagcgaa gagtagtctt      1980
     cagcaacgct cgtttgtctc tcagatagaa caagattttg gcgttagcga atcgctgaaa      2040
     tagcagcgat acgcaagcaa tttawawgtt ggaattgtga gcaacttgga catcgttttg      2100
     acgattgtct tgaagttcgc actatctttt gctatggatg tggggcaaag aacacataca      2160
     agcccaaatg ccaaaagtgc aacccttcgg aaaactatct gatggatgcg ccggtcaaaa      2220
     accacgcgtc gcatccgagg cagtaaaatc cgatagtggt acccagacag aacgatatat      2280
     agaattaagc acggatatat ctaataaaca accggacaga acattaccag ctatcgtcga      2340
     atacccccag ccatatcatg ttagaatagc gaaatacgca gcagcaagaa aacgaatctt      2400
     tggagacgtt agctcttgca gtcttattga gaaaaccagg cgttcaacsa gtcggatgcg      2460
     cagtttctgg aaaaaggttc gaggaagccg aaagaaactg atctccgcaa tctttatgaa      2520
     ctctgacaat cgactttata ctgatataag catagctaaw catcaatatg tagctctatt      2580
     ggactcaggt gcgtccataa gttgcatagg tggtgcagca gctaaagaat taggccaaca      2640
     tccaaaagtg agtaagtgtw caggcagaat tcgaacggca aacaacgccg aatgttcagt      2700
     tacaggaaaa cwaatagttg aaatcagtta tcgcgagctt accaagccgg tagagttctt      2760
     tataatccca gacctcaaac aagatgttta tcttgggatt gatttttggc gtgacttcgg      2820
     tttactcaac aaaatagtcg atgacaaaca agccgtcttg gagttagacg taggccgaga      2880
     agacgacgtt gtggatatgc caaacgtgca tttwctgtca gcaggacaaa aagaaaaact      2940
     agatgcagtt ataactaagt taccttctta cgaaaaggat ggtcttggta gaactcattt      3000
     aatggagcat gttatcgatg tagctgacgc gaaaccagtt aagcaacgcc actggccaat      3060
     ctcgccagcc aaagagaatc tgatgttttc tgaattagaa aatatgtwag cgttaggcgt      3120
     gattgaagaa tctaaaagtc catggagcag caactgtgtt ctcgtcaaga aaggaacaaa      3180
     agttcgctta tgtctcgatt cgagagaggt gaataagtta actgtaaaag acgcttatcc      3240
     actacctcat atagacggga tattaagtcg actacctcct gcacgcttca tcactggtct      3300
     tgatatgaaa cacgctttct ggcaaatacc gcttgaggag aagtccagac aatatacagc      3360
     ttttactata ccgaacaggc ctctgtacca gtacaaggtg atgccttttg gtctttgtaa      3420
     tgcagctcaa accttgtgta gactaatgga tgtagttata cctgmtaagt tgcgtactag      3480
     agtgttcgta tacttagacg accttttgat tttgtcagat gatttcgagt cgcatatgga      3540
     acttttagaa gaagtcgctt cgtaccttcg cagcgcaaat cttacaatca acatagccaa      3600
     gtcgaagttc tgtatgackg aaattaagta tctaggtttt gtcataggac atggtgaact      3660
     gaaagttgac ccaggcaaag taagcgcgat tgaacaattc ccaataccaa ccaccgtcaa      3720
     acagctacgt agatttctag gtttagcggg ctggtacagg cgttttgtgg ataactatgc      3780
     cacgattgcc gttcctttga cagacctgtt gaagaaaaac aaagttctta tttggtctaa      3840
     agaagcagat gaggcgttta ctcagctaaa agccaaatta atttcatctc cagttttaag      3900
     aacaccggat ttcaagaagc catttatatt actttgtgat gcgagcttat acggtctagg      3960
     ttgcgtttta gctcaagaaa atgaagatgg agtcgaattg cctwtagcat atatgtcgga      4020
     aaagctaacg aagccgcagc gaaattactc agtcagtgaa ttagagtgct tagcagttat      4080
     aaagggatta gcaagttcag agcgtatatc gaaggacaag atttttgtgt gattactgat      4140
     cattcagcat tgcaatggct gatgagacag aaagacctga caggacgttt agcgagatgg      4200
     tcgattcgtc tgcagggttt ctcgttcacg atcagtgsat ctcaaaatgt ggttgcggac      4260
     gcattgtcgc gtcgcgaaga ggaattaatt tctgagataa atgatggagg acctgtgatt      4320
     gatctggctt caaaggagtt tcagtcagaa cagtataatg aaataaggaa acaaattcaa      4380
     agtaaccaat cacgccttcc tgatctcagg gtcgtggatg attttgtgta taaaaggacc      4440
     gaaccagcca agkgaaattt attgcaagac gaggagtcat ggaaactctg ggttcccatg      4500
     aaccttgtag gcgaagtttt agcccgagca cataacgcac ccgatgctgc acatatcggc      4560
     atgagcaaga tgatcgataa gatcagacgg tatctattct ggccaggaat ggtaacgcaa      4620
     atacgcaatt atgtgtcaga atgttccgtt tgcaagtcaa caaagagccc aaaccgagtt      4680
     cttagaccac ccatgggcag accagtaaat tctgatcgac cttttcagaa gctctatatg      4740
     gatcttcttg gtccatatcc gaggtccaag aaaggaaata taggtctact aatagtcctt      4800
     gatcataata caaagtttca tttcttgcag ccgttacgga aatttacttc cgagagaatt      4860
     tgtgaatact tggaaaagca cgtattttat actttcggag caccagaatc catactgaca      4920
     gataatggct ctcagtttaa atcaggatat tttagagcat ttcttaatcg atttggtgta      4980
     aaacacgttt gtacagctat ctattcgcca caagccaacg cgagtgagcg agtaaataga      5040
     tccgttttag cagcaattag agcatacgta ggcgctgacc atacgagttg ggattcaaac      5100
     atcgacgcga taagcgcttc gttaagatcg agcgtacata ggagtacagg attttctccg      5160
     tattttcttt gttttggaca gaatatgata atcaacgggc gggactatga gttgcttagg      5220
     aatttaagtg cattgaccga cgatgtggca ttaaaatctg ccgacatgtt gcaaatagcg      5280
     cgccaacagg ctaaaaagaa aatctcggaa tctcattcag caaatgctag ggtatataat      5340
     ttgcggagtc gatcggtaca tctgaaagtt ggagacactg tattcgctcg cagtttcgct      5400
     caaagcaatg ctgggaaaaa gttcaatagc aagttagccc ctgttttcat aaaagcatcc      5460
     gttacaaaga agatcagccc gacttattat gagttagaga atgaagccaa gaaatcatta      5520
     ggcgtatatc atttaaaaga cataaggacg tgatatattc gagagataat tcacagtgcc      5580
     ctttttcagt taacccctcg gcgagatgtt actctggctg agttaactgt ggt             5633
//
ID   Gypsy-79_DEl-LTR repbase;    DNA;    INV; 2280 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-79_DEl-I;
KW   Gypsy-79_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2280
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7095-7095 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. 4-bp TSDs.
XX
SQ   Sequence 2280 BP; 682 A; 465 C; 482 G; 650 T; 1 other;
     tgtgggggcc agaatttata ggaaaataaa tttcaatgaa tttagcgaaa tatattttgc        60
     ccttcaaatt cgtatattcc tcaagccaca agtagtgtat atcgctgaca tgatcgaata       120
     gcgctctctc tttctctcag aacagtagcg tgcgtaggca gagaataagc gaaagaagtt       180
     taggaaaatt ccattgaagt ttggcaacgt tgcgttaagc aggcagacga gcgtcagcta       240
     gtcgcatcgt tctctcgtgt tgacggagtc gcatagcgcg atctctctcg cgcgtcagcg       300
     aaagcgcgta ggagccagaa acgagaacaa aaacctggaa ggattccgtt atttgaagtt       360
     tcgcaacctc gcttagtgca gacagcagcg cgtgccagaa ttttcgttca cttcatttca       420
     aatcgtaaaa cagtacacac gtctacgctg cgagcgcagt tttgaaagtg aataaaaatt       480
     ttaacgccac gtgtaacttg tgaaaagtgt ttaataccgg cgagacagcc aatattgagt       540
     tatagtgcta cacgtttgat taaaaactac agaaggtaat tgtgaataag ataggcaggt       600
     cagtaagtga tagtgttatt ttgttgcagc aggccaatat cgtcaaaaga aacgtgttag       660
     taaaagccgg ccaggaagta ccgagcttgc tacaatcgcg ctcgattact ggtcggcgga       720
     caacttggag gatcagcatt gtgaggcagc gttaaattct tgtgtccaca tcgctcgttt       780
     acgtcaccgg aacaccgcac gccacgtgcg gcttgatcat atacatcttg tgctcatcaa       840
     agacgcccaa aaggagactg agccagcaaa tatatatggc ctgaaaactt ctacaactag       900
     cccgccgaac ggatacgact cctgaccgca gtacgccacg tgctgcgtag cgattatcaa       960
     cataatatcg gcacatatgt gtggccgaaa ataaaaaccg tctacaaagc tatacactgc      1020
     gctgacaccg ctgcgcacag cacgccacgc gcggccacca tgatctagga tcaccccaac      1080
     cttatggaag gcgttgaggc agtcatctga ctgcmgcttc attacctcac cagcacgcgc      1140
     cacgcgcggc atggataaat tatcactgac gaaacccagg atttagcaag ttgcccaagg      1200
     aggatctttt cttcgagcag tctccggact aaggattgct ggaagatgtt gttaatttaa      1260
     aaatgtgacg aacagtcgag ttttttcttt tcttttgtaa atatagttta gattctttta      1320
     ataactcttg tattttaggt ttttgatcat agccgtttat ttagaatcca tttatacgag      1380
     ataattatgt tataaacccc agccgtgcaa atcacacaca tgttcagccc actgtaaaaa      1440
     ccaattttcc tgataacttt acataatgta ggttgctgca gcatcttcga tgggcccaac      1500
     gaaactgcgt caacggatat gtacgtaagt gaacgaaaac cttatattgc atttcatgaa      1560
     tataatattt tttggggatt tgattgtgtg tcgtttaatc ggataggctt gatatatata      1620
     tatatatgta tatataattt actttgtatt ataatctgct attgaataat gataatgtta      1680
     aggaaaaata tcccgttaat aactgatcgt taataagcta aagcttatag aatgaaacgc      1740
     accggacgcg tatatgtgaa tattttgttt gataataagt gatttggatt taaaatcgaa      1800
     aatgtttgat taatttggac cacataagtc cgtgtttgaa atacaatgct gctgttacat      1860
     gaattaagtt tgtgaattta taaataaaat caaataaggg ataaccgcca aatttctcac      1920
     gtgttatcaa ggtagggagg gtacagaacg gggagtgaat atcacctagc taccccgaac      1980
     tcttgattaa tcttgatcta cttagtcttc atcgtccgtc cgcttatcaa aaagtctgtt      2040
     tacatcccta tttgtttgga acctgttaga ttaccgctta gtgcacttaa aacttttttt      2100
     tgttttgtgt gacagtgttt atcatataga ggacgaggaa agaaccaccc cccatccggc      2160
     gagtttagta ccgagcaatg ctagaagtgc acgactccga ctcttctata cactagatgg      2220
     aatattttcc gaacatctag tgctgtctaa ataataacgc gcggcgcgct gtacactaca      2280
//
ID   Gypsy-79_LMi-LTR repbase;    DNA;    INV; 313 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-79_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-313
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~84% identical to the consensus.
XX
SQ   Sequence 313 BP; 71 A; 86 C; 76 G; 79 T; 1 other;
     tgttatatat cgcggcacac ggcgagccaa actccgcgcc accgcctgtg agtacgccac        60
     cggctacgag acggcggcac ttgtgttggc cagcccacca cctagcggcc gccggcacca       120
     gaaagctgac cgaactgcaa cgcggmtcag tgttctagtg tgctccaatc gatgtatacg       180
     ctgctctagg agtgtgaatt gattgtgtgc tttcgtctat gccctataca aagtgaacta       240
     ttgtctgtat cttatgttca accacaggca ctactgctag tgctaattgt atcactattg       300
     agaagttact tca                                                          313
//
ID   Gypsy-7_AA-I repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_AA_;
KW   Gypsy-7_AA-LTR; Gypsy-7_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4375
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 983-983 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3339-3800] - Integrase core
CC   'CATA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4169
FT                 /product="Gypsy-7_AA-I_1p"
FT                 /translation="MANVNAELLGQLSAMIAEALQASIGNAIQQVNAGAQN
FT                 QANDAAAPTPKIPTFSMSEYRPSDGSSVADYFSRFKWALELSQIPQVQYAN
FT                 YARVHMGVELNNALKFLVSPQDPATIDFEVLQTTLVNHFDRKKNKYVESIK
FT                 FRQIVQQTGESVAQFVLRLRQGAADCEYEDFLDRMLIEQLLHGLEAREMCD
FT                 EIIAKKPATFKEAYEIAYTLEATRNTAREVNTGATSSAPEETNRLGYESLR
FT                 TRRKSTFNHPKNVHGEQRTNIQPDNEVGPCKGCGGQHLRSQCRFRDVRCHN
FT                 CNIKGHIAKVCRSRKLSARDSSADQVESQESPSPEIDVVQSLSQVHDITST
FT                 GKKMIDVKIDGRSLRMELDTGAPCGIIAESKLRLIKPNFALQKTNRRFSSY
FT                 TGHPIECLGRIPVNVTIGATNRRLNLYVVAGESDSLFGREWISQFVEQINL
FT                 NRLFATEVPVNTITSSEITPDQATRLSALLGGFEEMFSEVPGKLVGPPAKV
FT                 HLKPDACPVFVKARDVPHALRERYAAEIDKKLASGFFEKVEYSEWSSPTHI
FT                 VVKKNGDLRITGNYKPTVNPRMIVDEHPIPKIESIFNKMNGATMFCHLDVT
FT                 DAYTHLPIDEEFSHVLTLNTATHGLIRPTRAVYGAANIPAIWQRRMESVLQ
FT                 GMDDVVVSFYDDIIVFAKDFDSLLQALSVTLDRLRLNGLRLNRTKCVFATS
FT                 SLDCLGHKIDRHGLHKSDKHVEAIRDAPRPTTPEELQLFLGKATYYSAFIP
FT                 NLSERARSLRDMLLSDSFQWTPEADKAYRDLKAVLTSPQVLMQYDPALPLV
FT                 LATDASKTGLGAVLSHRLSNGLERPIAFASTTMSSTEQRYPQIDKEALAIV
FT                 WAVKKFFHYLYARKFTLVTDHKPLSQILHPDKSLPTLCISRMANYADYLAH
FT                 FDFNIVYKPTKQHTNADYCSRIPSKTTSSGINMLGMQEGGSIEDEFDGFVL
FT                 HQIQQLPVRAEHIARETRKDDHLGKIVQTLETGRDLSQCGYKSPENKYTLA
FT                 ANCLHFEHRVVIPPSLRQSILTDLHVAHLGVVKMKSLARSFVYWPGIDSDI
FT                 EVAVRSCCDCARESPAPPKFNRHHWEYPKGPWERIHVDYAGPVADMMLLII
FT                 VDAYSKWVEVKVTSSSTTPATIAILDELFSTYGAPTTLVSDNGPQFTAAEF
FT                 KHFLQMSGVKYHKLSAPYHPATNGQAERYVQTVKQALKSMGTTRSTLKTNI
FT                 NEFLRQYRKATHSETAESPAKLFLGRNIRTRLDLVRPLDAGTRITEKQQSN
FT                 FNPTFRSFIQGQKVYFLSGNARLSKWIPGTIAEQLGDLHYRIDYHGKLVRR
FT                 HVDQIQRFHDSDQNNVPPTSPTAPTQQQESKSSEYKGVVQRRVRYYGE"
XX
SQ   Sequence 4375 BP; 1236 A; 1130 C; 1032 G; 974 T; 3 other;
     catacacgac aatttggtgt cagaagtggg atcgtggatt cgcgtcgcgg tagttctcca        60
     aaaccgcgaa cttcttcccg agatacaaaa tggcgaatgt aaacgctgaa ctgctaggcc       120
     agctctccgc catgattgca gaggcgctcc aggcatcgat tggcaatgcc attcagcaag       180
     ttaacgctgg agcccaaaat caagcgaatg acgctgccgc tcccacaccg aaaattccca       240
     ctttctcaat gtcagagtac cggccatctg acggatcatc cgttgccgac tatttcagtc       300
     ggttcaagtg ggccttggaa ctgagtcaaa ttcctcaggt tcagtacgcc aattatgcga       360
     gagtccatat gggagtggag ctgaacaatg ctctgaaatt cttggtaagc ccacaggatc       420
     cagctaccat tgacttcgaa gtgctgcaaa ctacgctggt caatcatttc gaccggaaga       480
     agaacaaata cgtggaaagt attaagttcc ggcagatcgt ccagcaaacc ggtgaatcag       540
     tggctcaatt tgttctccgg ctgaggcaag gagctgcgga ttgtgagtat gaggattttt       600
     tggaccggat gttgatcgaa caactcctcc acggtctgga agctcgtgag atgtgcgacg       660
     agatcatagc aaagaagcca gctactttca aggaagctta cgagatagca tacacgcttg       720
     aagcaacccg caacacggck cgggaagtga atactggtgc gacgtcttcg gcgccagaag       780
     aaaccaacag acttgggtac gaaagcttga ggacaagaag gaagtcgacg ttcaaccatc       840
     cgaagaatgt ccatggagaa cagcgaacca acatccagcc cgacaacgaa gtagggccct       900
     gtaaaggctg cggtggacaa cacttacgca gtcagtgtcg ttttcgtgac gtsagatgtc       960
     ataactgcaa catcaagggg cacattgcga aagtgtgccg ttcaagaaag ctatccgctc      1020
     gggactcatc agctgatcag gtggagtcac aagagtcgcc ctcaccggaa atcgacgtcg      1080
     tgcagtcact gagtcaagtc cacgacataa catccaccgg aaagaaaatg attgacgtca      1140
     aaatcgacgg tcgttccctg cgcatggaac tcgataccgg tgcaccctgc ggcataatcg      1200
     ccgaatccaa attaaggttg atcaagccga acttcgcact acagaaaacc aacaggcggt      1260
     tttcgagcta caccgggcac cccatcgaat gcttagggcg tatcccggtt aatgttacca      1320
     tcggagccac aaatcgtcgg ttgaacttgt atgtagtagc cggcgagtca gattcactct      1380
     tcggacgcga gtggatttcc caattcgttg agcaaatcaa tctcaatcga ttgtttgcaa      1440
     cagaggtgcc ggtcaataca attaccagtt ctgaaattac accggatcaa gctactcgtc      1500
     tttcggcgct gctaggtggc tttgaagaaa tgttcagcga agtcccaggg aagttggtag      1560
     gtcctccagc taaggtgcac ctaaaacccg atgcatgccc ggtatttgtc aaggctcgtg      1620
     atgtaccaca tgcactacgc gagcgatacg cagctgaaat agacaagaaa ctggcgtctg      1680
     gttttttcga gaaggtggag tattctgagt ggtcatcccc cacccacata gtagttaaga      1740
     aaaacggaga cttgcggatc accggcaact acaaaccaac cgtcaaccca agaatgatag      1800
     tagatgaaca ccccatacca aaaattgagt ccatattcaa caagatgaac ggcgcaacga      1860
     tgttttgtca tctggacgtg acagacgcct atacccatct tccaatcgat gaagaattca      1920
     gccatgtatt gaccctcaac acagctacac atgggctcat ccgtcccact cgagccgtat      1980
     acggagcagc aaacatcccc gcaatttggc aacgccgtat ggaatcagtt ctccaaggaa      2040
     tggatgacgt cgtcgttagt ttctatgacg acataattgt attcgccaag gacttcgaca      2100
     gccttctaca agcgctatcg gttacactag ataggttgag gctgaacgga cttcgtctga      2160
     accgaactaa atgcgttttt gcaacgtcat cgctcgattg tttgggccac aagatcgatc      2220
     gccacggatt acacaaatcg gacaagcacg ttgaagccat ccgggatgcg ccgcgaccta      2280
     caacaccaga agaattgcaa ctattcctag gtaaggcaac ttattacagc gcattcattc      2340
     cgaatctatc tgaaagagca aggagcctac gcgacatgct tctttccgac tcgtttcaat      2400
     ggacccccga ggccgacaag gcctaccggg acttgaaagc agttttaaca tcaccccaag      2460
     tgttaatgca gtatgaccct gcactaccat tggtgctcgc cactgatgca agcaagacgg      2520
     gtttgggtgc cgtgctctca caccgcttga gcaacgggtt agaacgacca attgcttttg      2580
     ctagcaccac catgtctagt acggaacaac gctatcccca aatagacaag gaagctctag      2640
     ctatagtgtg ggcggttaag aaatttttcc actacctgta cgccagaaag ttcactctgg      2700
     taacggatca caagccgctc tcacagattc tgcatcccga taaatcgctt ccaacgttgt      2760
     gcatcagtcg catggcgaat tacgcggatt acctagcaca ttttgacttc aacatcgtgt      2820
     ataagccaac aaagcagcac acgaatgctg attattgctc tcgtatacca agcaaaacta      2880
     catcatcggg gataaacatg ctgggtatgc aagaaggagg aagcattgag gacgaattcg      2940
     atggatttgt tctacaccaa attcagcaac tgcctgtgcg agcagaacat attgcacgag      3000
     aaacgcgtaa ggatgaccat ctagggaaaa tcgtgcaaac gctggaaacg ggtcgtgacc      3060
     tctcccagtg tggctacaag tctccggaaa acaagtacac cctagctgca aattgcctgc      3120
     acttcgagca cagagtagtc atcccaccat cgctaagaca atcgatattg accgacctac      3180
     atgttgctca tctgggagtc gtgaaaatga aaagccttgc caggtccttc gtctactggc      3240
     caggaatcga ttctgacatc gaagtagctg ttcgttcttg ttgtgactgt gctcgagaat      3300
     cccctgcacc acctaaattc aatcgacatc attgggagta tccaaaaggc ccgtgggagc      3360
     gcattcatgt cgattatgcg ggcccggtag cggatatgat gcttcttatt atcgtggatg      3420
     cctacagtaa gtgggtcgaa gttaaagtca cttcttcgtc aactacccct gcaacgatcg      3480
     ccatcctcga tgaacttttc tcgacttacg gagcacccac aacactagtg tcggacaacg      3540
     gtccgcagtt taccgctgcg gagttcaagc acttccttca gatgagtgga gttaaatatc      3600
     acaagctgtc tgcaccctac catccggcca ctaacggtca ggctgagcga tacgtccaaa      3660
     ccgtgaaaca ggccctgaaa tccatgggaa caaccagaag cacactaaaa acgaacatca      3720
     acgagtttct tcgccagtac cgaaaagcga cccattcgga aacagctgag tctcctgcaa      3780
     aactattcct ggggcgcaac atccgaacac gcttggattt ggtccgacca ctagatgcag      3840
     gcacgagaat cacggagaag caacaatcca actttaaccc gacgttccga agcttcattc      3900
     aaggacagaa ggtatatttt ctatctggaa atgcacggtt gagcaagtgg attcctggaa      3960
     ctattgctga acaactggga gatttgcact acagaatcga ttatcatgga aaactcgtaa      4020
     gacgacacgt agaccaaatt cagcgtttcc atgacagcga ccaaaacaac gtgccaccca      4080
     cttcacccac tgcgcctact caacaacagg aatcaaagtc atccgaatat aaaggtgtgg      4140
     tgcagcgacg agtgcgttac tatggtgaak ttatgacgtc atcaaaccgg tcaccctcaa      4200
     cagcgagtga tggttctgca gttatgttag gatctccgga tgcacgtttt tcaactccgt      4260
     gtggcactcc ggaactacag acaagacaca tcgatcctcc tatgctgcgc cgttcggaaa      4320
     gacagcgccg cccgcctttg aagttctctc catagggagg aagaaatgtt gcata           4375
//
ID   Gypsy-7_AA-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_AA_;
KW   Gypsy-7_AA-I; Gypsy-7_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-205
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 984-984 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 205 BP; 57 A; 35 C; 35 G; 76 T; 2 other;
     tgagattgtt aattttcatg taacgtttta tttcagtgca tttcawtttg atctagatca        60
     cggatctaga tgtaagaagt ttttccctca gttttgcacc atgattggtc cgtatcaaat       120
     gcacattatt tgttcatgtt aaaaataaag taattaacgg ttcgaagtaw atcgcgtcgt       180
     ttccattaca tccgggaaat tccca                                             205
//
ID   Gypsy-7_ACe-I repbase;    DNA;    INV; 9795 BP.
XX
AC   .
XX
DT   07-JUN-2012 (Rel. 19.03, Created)
DT   08-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Gypsy LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_ACe-I.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-9795
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 738-738 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to the consensus. The 3'-end is not determined.
XX
SQ   Sequence 9795 BP; 3586 A; 1867 C; 1792 G; 2538 T; 12 other;
     gaccaagtga atttttgggg gctcatccga gattataagt gcgatctttg tgaacaggaa        60
     tgaatacgag atctacatct gataaaagtg aagttaatag tctttataaa accgctatag       120
     agaatcagga caagtctaaa cacgatacat ctcacaatac acacatccac tcctgcatcc       180
     tctaaatcta cgcatgagtg aattgatttt aatgataaac ttttcgctgg ataacttcgg       240
     attgactaag atctgtttaa aaccttaact aactcaacac ttgtctccga cgcttccggg       300
     gatattacaa ttgcaaccgg caaaaaaatt gagtatactc ctaagtcaaa agaaaataga       360
     acaatgaccg aatctattcg ctacattaaa atacgcggtc gaagccgtcc ttttcttcga       420
     cggtaaaaat attccgttaa catactttat tgagggatgt gaggaagcaa aatccatgtt       480
     gcctgcggaa gctgaatctc aattcacaaa aattattaga actagaaatt gtgggcgaag       540
     cgcgccgcac aattcaagat caagattttg acagtgtatc tcaactaaca aaatatctag       600
     agcaagttta tggccatcaa aaaatattta tcagttgcaa ggagaattag gcagtatcta       660
     tcaaaagaat ggaggatgta gttacttacg cgaatcgagt taaaattctg gggaaacaaa       720
     tattaaaagc acataaagat tcaggaaatt ttctttctaa tcaagacatc aaaccatcat       780
     tagagaaaga tatgtgtaaa tgtttcatta gaggactaaa atcggagatc gaacagagaa       840
     tagcgagaaa tttaaacgtt caagaaaccg tagctgatgc gctttaagaa tagaaaggga       900
     gctacattca atgacagatt tgacaaaggc acagcaatac acaagtaaaa tactagatac       960
     taataaatta cgcgaaaatg tgtcaaattt gctataaaga agggcattca gcctctaatt      1020
     gcagaaaaat aactaattta ggaactgaga ttttaatatg tcaaatttgt aaaaaacgcg      1080
     ggcatagcgc cgataaatgt cggcttcgcg accctcgagc tcaatgacct gttgttacaa      1140
     ggaaataata ttatttgtca actttgttcc aaatctgtca taatgctaaa ttttgtaaaa      1200
     cwaataatat aataacaata atcagaataa gccctctata atctgtcaat ggtgtgataa      1260
     accaggtcat tcggcctaat aattgttgga aaaaacaaaa cgagcaacaa tgtaattcgg      1320
     aaaataaggc aaaaattgtt tgtcagattt gcaataattt tggacatgtc gccaaagatt      1380
     gtcgatctaa gatgagacaa gatgctacat cttcaggctc gctattctgt cgctattgta      1440
     aagagcaagg gcatctcctt gacaactgtg aattacgcat cgcaagtaac aacagaaggc      1500
     gaataaataa tcagggaaac tccgatggcc cctcgaagtc gggtgtgcaa caggagtctg      1560
     cacggatctc acacctgcca tcgccacaaa aaacccagta ggtaaaaatg cggcagaagt      1620
     gcaaccggta acggtaaatc tcgacaaaca tagtcgcgtg cctaccgttc aggtaaagct      1680
     ttgcgaatcc actccatata taacttttat gttagacacc ggttcagggc caaacataat      1740
     taaagaaaat tttatatcaa gggatatcac tatcaatcat aataatatat taaaattaaa      1800
     tggsataaat gaatatcctg tttatactct tggaaaaaca ctttaccgct ttttgaaaat      1860
     aaagtaactt ttcatattgt atcaaacgat tttccaatca cacaatcagg catattgggt      1920
     aatgattttt tcaaacagac ttcctcaaaa atagattacg cgaagggata tctagacata      1980
     tcaggaatta ctacaccctt cttttctcca gaaatcatta cagcatctcc gcgaacagaa      2040
     tcattgtttt acgtgagaat agaaaatccc gagataaaaa taggatatat cccaaaaata      2100
     aaaatagctc atggaattta tttaggggac accatagtag aaaatatctc tggaaaagcg      2160
     tttctaaacg tcataagcaa tactctggac gaagaagtgg aggttcaagt gccaatcttg      2220
     cgccttaaac ctttagatga attatttgat aactacgaag attatcgagc agagactgcg      2280
     gatatgcagg ccaaatttgt gtatccagaa aacaaccaag agcgtwgtga ggtatcccaa      2340
     ctgcgatgcc gatttaaaaa atgacaaaga agacataatg tgaaataaga tgacgggaaa      2400
     attgaaattg aagaaaatat gatattaaat gaagcaaaga aggatactaa taacacattg      2460
     cccaaaacaa gggtgagaat aaaattaaag ggaaaawtca agaaattacg agaggaaata      2520
     aaaaattaaa taaaaattcc aatctagagg aaggttttca aaccttcwcc gagactctag      2580
     attccgaaat ccwtggaggg ggaagttacc aaatccctcc tgaaaatcaa attaattcca      2640
     agatcctggg agagggaaat ttccaaatct ctcctgaaaa tttacaattc caaaatcctt      2700
     ggagggggaa gtttccaaac ctctcctgaa aatttgaata atcctagaat tccagaggaa      2760
     ggtttcctcc atagtaaatt ctactcctgt cgattgcgag gagggaagta accaaacctc      2820
     actacgcaat gcgactcaat tttatttaaa agaatcaagg gaaaggacat atttaaagga      2880
     agaataaaat tcctcgagag ttggaacatc cacggataat aatcaaacct cttatgttac      2940
     ctwtgaagaa ctcatgaaaa taatacaatt atgtgatccw aatgtcaaat ccttttataa      3000
     ttgcgaaaag aaaagtaaac cgtcttcgaa aattcctgca tcgacgcaag ttcaatccca      3060
     agaagtaata gaaaaattca tgcgcaaatg taagtcgaaa caaaaggaga gagcagaaaa      3120
     ggataatata ccgctcgaat gctttacatt gtcagaggaa cctaataaga atagacttac      3180
     agaaattgtg gaattattac gttggaacac ttaaatgmac aagaagagaa aagcgtaata      3240
     aatcttatat ctaatagcca ggacagattt catattcctg gagaaagact aactgcaact      3300
     aatgtattgc aacatcaaat acctacaaca gacgatcgac ctataaacac acgacaatac      3360
     agatttccgc aacttcataa ggaagaaata aataagcaag tcgaagaact gctcgaagga      3420
     ggcatagtaa aaccttctca atcgccttac aatacgccca tatggatagt cccgaaaaaa      3480
     gaggactcga aagagaaaca agagatggag aatggtatta gattttcgcg ctctgaacga      3540
     aaaaactgtc ggagacgcat atccattacc taatattgtt gacattctag atcaattagg      3600
     cggagcacaa tatttttctg tgatttggct tccggattcc atcagataaa aatggatcct      3660
     gcggatagcc ataaaaccgc ttttacaact cctttcgggc attacgaatt cgacgcatgc      3720
     ccttcggatt aaaaaatgct cccgccacct tccaaagatt aatggatcta tggtactatc      3780
     aggattacaa ggccaggaat tatttgttta catggatgac attgtcatat atgccacatc      3840
     attagaggaa cacgmaagaa aatataattt attaatagac cgacttcgaa agctaatctg      3900
     aaattacaga caaatgcgaa ttcttgaaaa cagaagtaac atatctaggg cacgtaatca      3960
     gcaaggatgg agtcagaccg gatccaaaaa aattagacgc cgtaaggcat tttccgagac      4020
     ctaagactcc gaaaaatatt aaacaatttc tgggattagc aggatattat cgcagattta      4080
     taccaagctt ctcgaaatta gcgaaatcac tgacaaattt attaaagaat gacacggctt      4140
     tcgaatggac atccgttcaa gaagaatcat tcgagacatt aaaacaaaga ttatgtgaag      4200
     agcctgtttt acaatatcct gatttttcaa aacctttcat tttaacgaca gacgcttctg      4260
     gaatagccgt gggaggcatc ttatcacaag gagaaataaa taaagaccaa tagcatacgc      4320
     ttcgcgaaca ttgaccgaca acgaattaaa atatgataca tatgaaaagg aagcgttagc      4380
     aatagtatat tgtgttaaac atttccgacc atatctatac ggacgaaaat tcacgttggt      4440
     cacagatcat aaaccattac tctggtttaa gaatgcacaa gatgcaaata tgagaatact      4500
     ccgctggaga ctaaagcttg ccgaatatga ctatgatgtc gtatataaag caggtaaaac      4560
     caacgtaaat gctgacgctc tatcaagaaa tcctgtaaat ctcgaagaaa taaattgcaa      4620
     wataattaat cctaatagat ccttgaatct tgacgatccg aaagacgtag aaatgatttc      4680
     tagaatgtta gaagaaaccg acgaagaaga agaggacgaa aattttgaat tatatctttc      4740
     cgacgacgag aaagatgaag atcaaatgcc cgacaataat ctgtctgacg aaaatacaga      4800
     ctcaatacca ttcacacacg aggaactgtg tgagccaccg agattacaaa tcaccgaaga      4860
     agattaatcc atgagccacc taattacaat agaatgcaaa cccgaagtca aacaaaaaaa      4920
     taagaatgtt cgtcaagaaa tattatcgca ggaaaatgaa gatgaaatcg aagaagtaga      4980
     aaatagaaat gatccaccag acaaagaaag agatatcgaa gaagatgcaa gtaccgatga      5040
     agacgaagaa tcgaataaaa ataacaaaaa tcaaggctca aaaataaaga taatcaaaga      5100
     taatataata aatagtcgcg atttattatt tctacgcagg gataatattg cttattttgt      5160
     tgacaccgat ggaagaccat tagattcagg ctctcagaaa cttttcgaaa gaaacgagat      5220
     cccttgtcta agagatctga ccgtaggcga agccaaagct ataaaatata aaaaacatta      5280
     ccatgttgct ttgcctgtta gcgaagggca acgtgaaggt ccgacgatga cactttctca      5340
     aatttctaca gtggtaaaag atttacgaaa catcgttgaa aaattaaaat tagaaacatt      5400
     agtatcgcaa aaacagattt tgttaataac gtaccatgga atgatatcaa atctttgtta      5460
     caattagctt tcatcgattc aacaactaaa ctaataatat gcaatggatt aatcaaatat      5520
     ccacctaaag atcttcggtc tattataatc gacgaaatgc attgctcgca ctggaggaca      5580
     tcgaggcgta tcacaggata aaacacaatt attattggga aaatctaaaa tccgatgttc      5640
     aacaatatat tcagcaatgc ttgcaatgcc aattgaaaaa attagtaaga gtcaaaacta      5700
     aacaaccaat gataatcacc gacacgccag gatcttcttt tgacaaggta gcaatggata      5760
     tcgtagaaaa tctctgccaa aaacagaaag aggtaacgaa tatattttat aaccttgcaa      5820
     gatcaactaa caaaattttg catgggtatc actccagatc agacttccga aacaatagca      5880
     gaagcttttg tagatagatt catttgtgta ttaggagcac caaaggctat attaaccgat      5940
     caaggaagaa atttcatcag cgacttaatg aagaaggttg caaaaatttt tagaatacgc      6000
     aaattccgca caaccgcttt tcatccacaa tcgaatggat cattagaaag atcgcatcat      6060
     gctttgggcg aatatttgaa acaatatgca aattcgcaaa aacaatggga tagatggatc      6120
     agccttgcaa tgtttaatac taacgaacaa agcacactcc gtacgaactg atattcggaa      6180
     aaatagctcg gataccttca aacgaacctt tagcaccgga tgacaaatta tctaattaca      6240
     atgattatct aataaatctt gtcacgcaac tccattccat acagacaaat gctcgtgaga      6300
     atgtcatcga agctaaagaa aaatcaaaga aacattacga caagaaaatt aatccgcaga      6360
     cctttaagcc tggagatcag gtatttttat taaaagggcc gaaacccggt aaatttggag      6420
     atcaatacac aggcccacac gaaatcctag aaatattaaa cagaaacaat attaaaataa      6480
     gaataaagaa aaatagtcgc attgttcatc ccaatcgctt gcgaatttct catattaatc      6540
     cagctcgcag taattaaaca agtcaaatcg acatttcaga taatggatcg ttgcatcaaa      6600
     ggaataactg cttgtttgta ctaataatat ggactcgaga aacttatgga ataataggct      6660
     acgactgtgg ctccgcatct gcaaatttaa caaccttatc attagtaaat gtcgaagaat      6720
     gcgacattcc acaacaaaca gtaaattcca ccaaggttta tatacaattg cttcaactca      6780
     acgactttaa agccgtaaaa gtgatacagt gcaaacttga aatagatcgt actgtaagaa      6840
     gatgtggaat gttttctcat accttggacg tacataatgg acaattctca tacatagccg      6900
     atgtgtctcg agaagcatgt caacgcatgc atatttatgg aagcttcgaa atagcaggca      6960
     ctcgtataac aagattgata tcaaatcaga cagcttcgcg cccgatagtt ttagccggcc      7020
     atgtcgatta tgatggggca tgttaccggt ggcgcttatt ccttacggaa cttggggaaa      7080
     tgtcatcgta ttaggcagca tcaaaattat cttacaggat tatatcgccg atgtgcgaat      7140
     aaatacaaat cgcgtacacc tcagatcagg agtaacctgc gaattaagtg ccactcaatg      7200
     cactgatata gaaggaggag aaaccttttg ggaatccgta ccagctgatc aatgtaaatt      7260
     ctcagattat ggcgtgttgt ataccggaca cccaataaaa tatttgatct actaatgaac      7320
     gctctcaaac agcaaactct actcgttaac cacgccgaac atgatttttt tctttgacaa      7380
     gcactggaaa atattccgtt tgtggacata cactcatcag aaccgaacat ccgaaattaa      7440
     taatttttga gacctcacca ggagccgaag tctttaaaat atctggcttt gtgtccataa      7500
     acctcgacct tttcacatac ataaactcga aattcgtata cgtagagagg catatacgta      7560
     ctcagattaa ccagctatat agaaatatat tattacaaca atgtcaactc gagtaccaga      7620
     tgatgcaaaa ctcgttagca atagccgcta gatcacctga catttttgca ctttatgaaa      7680
     gaatctggat acatggcact tttggccgga gagataattc acattgtaaa atgtgtaatc      7740
     gaggtaatgt tagctcggac cttcgagtgc tacgaacaat ttccagtgct tcgagaagaa      7800
     acatactttc tccgcaaacg cacatattga tacgacacgg aactcagatc acttgtaatt      7860
     cattcgcgtc caccatgtac ctsttagggg atgcatggta caaaatgatg cctaaacctg      7920
     tagagacagt accgcccacc ataatgaagc cttctacaaa attgtcatag aaatatgtca      7980
     gtccaggagc attggcaacc agtggtatat actctcaatc cgacttggag gaacttaaag      8040
     atcatataat gtttcccgca gagcgaccgg caattctcaa caactatagc aagaggcatt      8100
     ttgggacaat caaccgtact taacggaggg tcactctcaa atctcattga cgaagcatca      8160
     atagagagaa tcgcaatctc cgcatgaaca aagttttgga acaaattttt gatattcggc      8220
     aatattagtg ctggattgat agggatatat ttgattggca gacttatcaa attatttctt      8280
     gacacattcg tacatggata cgccttacac acagtatacg gatggtcagt gtacctgcta      8340
     ggagccatat gggattcgct tacccagctc ctattacact tagaaaaaga tagacctaag      8400
     aacggaaagt ccagcgctct agcgcctgat gcgcccgaga acgatgatcc cgaatgtgga      8460
     gagactttac ccctcacaga aatgaaggca gaacgaatct atcccctcct cctcacagaa      8520
     acgatagttt atactttgga gctcagaaat tgaaacactt gtgttctatc tccctattat      8580
     aatacataac cgcatgctat gacatgtcag ctcgcatgtt acgccatgca gatttaatca      8640
     cttaaaccgc atgctacgcc atgccgattt aactctttaa aaaccgcatg ctatgtcatg      8700
     cgtccatcca ttctactcat acactcataa caaaaaaaaa gaaaatctca ttattaattt      8760
     gtagaaaatg gatatcaggg acatcaacac caaggatcta agccacgggt ccttgcacat      8820
     aagaatcatc aagatggact cattctcttg tgggtccaac tctatcacgc ccgagaagat      8880
     ctcgaggaac tacttgaaga tctcacgcgc cggatggcac gaaaagggcg ggagctaatc      8940
     tacaaccccg accacgtgct gccagacgaa tacgtcgcgg tatgcgaagg aaaaacctgg      9000
     caacgggagg ggtggtaatg aacctcgaag gaagagatag gtcatagtag cattaagaga      9060
     ctggggccgt gtcatccgac gcccgatcac cgacatatac atattggagg atcgatttcg      9120
     ggagatgaat gattggcaag ccatcccttg cgggcttacc caccttggtc ccgtcggatt      9180
     aagacccagg tgacctcgga aaagtagagc actcactaag actctgctag gaaggagaga      9240
     aggatggatg cggatcctcg agcccgtaga aacctacggt gctgtcatta cgcttgaatt      9300
     gaagcgtgaa agtgaggatg aaatgagcag tctgcaagat ctgctcattg ccatgggatg      9360
     tgctcagcat actgatgcga agatagtgcc agcaatacct ggcatcctgt aataacataa      9420
     gtctacacct tcatctttat gatgattata ttaagacatt ttatatattc tatatcttgt      9480
     atatcctcac acatatacta ttattatatt atataaaatt ccctttatct tcattacatt      9540
     attaagttat attattacag tttatatttg taacatctac acatatatca atgtagattt      9600
     ataagtatta tgtgaacctt ttatctatca tttttcttat ttttatatta ttagactaat      9660
     cgcatcttta aatcaattat gttaatatta tattcttagt atgacgaata tgcgggatta      9720
     ataaaaaaaa aaaaaaatta tttttataaa aaaaaacaac acaaaaaata tataataaat      9780
     aaaataaata aaaaa                                                       9795
//
ID   Gypsy-7_ACe-LTR repbase;    DNA;    INV; 2084 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 19.03, Created)
DT   07-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-7_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-2084
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 739-739 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to the consensus.
XX
SQ   Sequence 2084 BP; 567 A; 566 C; 385 G; 564 T; 2 other;
     tgttacgtcc agactccaca gttcttttct tcgattagaa ttttcgtcat caccataaaa        60
     gttattaaca agtaacaccg gtagaccatc gtttctatca tagggagtta caatagtgac       120
     aagccgaata acattcgcct ttttaagact aataatccac tcgggacgaa gttgtttgat       180
     taaawatttg aatcaagtgc tgaatagacg aactttatcc cgaggaacag aagaagtaaa       240
     tagattaaga attacaaact gaaacagcag ttgtctgtaa taaatgacac atgtggctct       300
     aaactattga gcatccggca aatggtcgat gacggaagtt gtcttagaca catatcccat       360
     ttcacaaccg atatccttaa tcctaatcct agattagatc agtaacatac gcgaggcctg       420
     cactcggcac tactaactcg cgaatataaa aaggaggccc ttcgcgaaca gtcagtcagt       480
     caagctccat ctccgacacg aaactctgcc ggttcgcgac tacaagtcat tctgcaagcc       540
     gacggtccgc aaccatatcg ctcmaccgat cttagtggtg agccgtgatc agttcgatcg       600
     agcgatctta ttcgtttatt acgtgactca agtgaccgaa gcctccaaac cgctgggtca       660
     accctcccct tggagtcctt agacaatcac agagatcgga cctccgacag tcatcctcaa       720
     aagcctatac atatataata catatatata tatatatata tatatatata tccgtatact       780
     caccgcgaaa gctaacccac gctaaaccat agtgccacgc ttaaaccgcc cctacaaggg       840
     ttggcttaga agccgggcct accgtgaagc gcggagactc ctggaccaag cgtaccagga       900
     gtaccttgag ggttctcgag atcggagtcg cccagccgag gacgcattgc cttcgccggc       960
     tctacctgct cacctaaacg cgttagaggt gatacctcct ccttctcctt catctccccc      1020
     tcgaactcct tccctcctcc tcgatctccg tcacccgcgt tttcggacgc tctgacggag      1080
     cgaattttcc ctgacacccc tccgctaaca cccgattcat ccgtcatctc cattttcccc      1140
     cagaggaact ccgtctccga cgaactccac ggacagcgtg gagttcctag aagaaattcc      1200
     tccccaccac cgagatccta tttccgcatc caagagagtg actcatttga gtcactcgtc      1260
     agacaattcc cgcggactac cgcacctatt cccgagggga cctttacgat cggccctcat      1320
     tatttcgatc cagacgaaat ccggcatgga attaccggcc aacctccccg ttcctgtatt      1380
     ccggtgttta ttccgaattc cgccaatcct tatttagttc cggtggaatt ctttttcaat      1440
     ctctttcctc cttcttccgt tactatccaa gaaatagact gaacaaaaac cagtgtgctc      1500
     tgcttcccct gaattctcat tctctggcga tttaatccaa ctaacatgca taaaatttaa      1560
     ataattgtta aatagtcgtc aaatgttaat tagctaataa agattatcgc gtcgatctgt      1620
     aatatgtaaa ttagtttgta ataaataaac ttattaaggt ataaccttgt tctttatctt      1680
     cttcgattga taatggtcag gaacaataaa caatactaat aattttacat ctttctctcg      1740
     ttctttaatt ttaaaaccct aaaaacctcg tagtcgttta accttgccct tttcagagat      1800
     cgcacgtggt ccattcccga gttaaaggga ttagattcct tgactcgaaa ttcggaccga      1860
     cgatcgcacc gctcgtagga aacaggtgtc atagcgtctt ttcgggacgt tgacccatat      1920
     tccgaggcga gcacgaaaaa agtgcgttcg actcgcggta ctcgcctctg tgcggatacc      1980
     tgcgagacaa gagtctgacc gcgtccaggt accctcacca ttcccgctcc tcttctctcc      2040
     agtaggatca taattttaaa atctccacgg gtttggacgt aaca                       2084
//
ID   Gypsy-7_AnFu-I repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4438
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2893-2893 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           303..4388
FT                 /product="Gypsy-7_AnFu-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MGTVEELCEIFTKVGLMRECEKYSLNTTGGKVEMANR
FT                 IVEYRATIASVVNVGTPKSGRSVESLNNNPENQEGEGAQAIHGDENEGVDE
FT                 EDDPLENTEDECEDVDDDDESGGELFQTALRTSSPRRSRRVYTFRDIEDSI
FT                 ENFGAEEGQDVKLWLSHLESVAKTARWDDEQRLIMLRKKLTGVARKFVFSL
FT                 RNVSSYAKLKRELVDEFAPLVRSSDVHRILSSRKKGVTETMREYLYEMQRI
FT                 AKQIDLDEPSLCEYVANGVTDDDFYKSLLYEARTVRELKEKLRNHEKILKT
FT                 KKKKATDNAEGKREGTASKPDTKKTEQRCYNCGKKGHQARACTKAQGGPKC
FT                 FSCQAYGHKSNECAQNKKVVPAKVNVMEESEGLIDVLFHNTVVTALFDSGS
FT                 KHNLMTKTCHNKIGGTTLSDTTTCFRGFGGVKTKAIGFFETDITVNFNVFR
FT                 GIRFFVVPSECMSYEAILGRDSLNYFGVTMTTAGLEISPCDTTNEVLSILR
FT                 EKDDEIDVPPRFAKEVKELISAYQPSKEVRCRVATKIILHDDTPVRSSPRR
FT                 FAPGEKAVLEKTIEEWLAAGIIKESESDFASPVTLARKKDGTLRVCVDYRE
FT                 LNRKMVKDCFPMRNIEDQIDRLKSASVFTTLDLKNSFFHVPVETASQRYTG
FT                 FVTHAGQYEFLRTPFGLANSPASFSRFVADVFRELIKDGRILVYVDDLIIP
FT                 SCDEETNFQTIRELLKVASEYGVQFNWKKSQFLKKEVEYLGYVISGGCYRI
FT                 SPAKLRSVQFFPVPKNVKELQRFLGLTSYFRKFIAGYATISKPLTNLLQKD
FT                 VPFEFGEAQQNGFDELKRVLVTDPVLRIYDENSETELHTDASKYGYGAILM
FT                 QKNDDDKFHPVAYMSQQTSSAEKNYSAYHLEVLAVVRAVEKFRVYLFGIKF
FT                 KIVTDCAAFKQTLKSKELSARIARWALMLEEYEYEVVHRSGSSMKHADALS
FT                 RAPVMIVTHDPMIEALKRSQKSDERIKVIIELLKTQEYEDYVMSDDLLMKV
FT                 VQGRELIVVPADMQSELIRRAHDNGHLGARKLEAIIQREFYITNLTEKVKQ
FT                 IIACCVKCILSERKRGKTEGLLNSIPKGDIPFDTYHVDHLGPMDITEKRYR
FT                 YLFVVVDAFSKYTWIYPTKTTNSFEVIQRLKMQSEAFGNPRRIVHDKGTAF
FT                 TSNDFKQYCENEDIARVEITTGVPRGNGQVERVNQVIIGMLKKTSANDSTK
FT                 WYKHIANIQKWINSSPHCSIGVSPFEAMFGVPMRNEGDLRLGELMEEIRVA
FT                 QFNDEREKLRAGARSCIDKAQEEQRRSYNLRARPATVYKEGDLVVIKRTQF
FT                 GPGRKYAAEYLGPYKITSVRPHDRYDVTKINGEGPKTTSTAASHMKPYRM"
XX
SQ   Sequence 4438 BP; 1348 A; 799 C; 1187 G; 1104 T; 0 other;
     tgggggctca accgggatat gagtaaatta tcccactgac cagtgtcgtt ccttagtgga        60
     aattgtgagg cttttcataa agcaatgtgt gacgttcctt agtggaaaat tgtgaggctt       120
     ttcgttaagc atttgtgacg ttcctgagtg gaaacctgtg agacgttcct gtgtggaaaa       180
     accgtgatgc gttgtaattc ctgtgtggaa tactgtgaag attttacaac aatttgtgac       240
     gttcctgtgt ggaaatttcg gttgtaacat tttctttgtg tgcgagtaaa cagcgcaaca       300
     tcatgggtac cgtagaggaa ttatgtgaaa ttttcactaa agttggcctg atgcgtgaat       360
     gtgaaaagta ttcgttaaac accactggtg gcaaagtgga aatggccaac agaatagtgg       420
     aatatcgggc aacgattgct tcggtagtta atgtcggtac acccaagagt ggacgtagtg       480
     tggaatcgtt gaacaacaat cccgaaaacc aagaaggcga gggtgctcaa gcgattcatg       540
     gtgatgagaa tgaaggagtt gacgaagagg atgatcctct agaaaataca gaagacgaat       600
     gcgaagatgt cgatgacgac gacgagtccg gtggtgaact ttttcaaacg gctctgcgaa       660
     catcatcgcc aagacgatcg cgacgagttt atacgttccg cgatatcgaa gatagtattg       720
     agaattttgg agcagaagaa ggtcaagacg tgaaactttg gttgtctcac cttgaatctg       780
     tggcgaaaac cgcacgttgg gatgatgagc aacggctaat catgttgcgg aaaaagttga       840
     cgggtgttgc gagaaaattc gtgttttcct tacgcaatgt gtcgagctac gcgaagctaa       900
     agagagaatt agttgatgaa tttgctcctt tagtgcgatc gagtgatgtg catcgtatcc       960
     tttcaagccg aaagaaagga gtgaccgaga cgatgaggga gtatttgtat gaaatgcaac      1020
     gcatagccaa acaaatcgat ctcgatgaac cgagtttgtg cgagtatgtt gccaacggcg      1080
     tcacggatga tgatttctac aaatctcttc tatacgaggc tcgaacggtg cgcgagctta      1140
     aggaaaaatt acggaaccat gaaaagattc tcaaaacgaa gaagaagaag gcaaccgata      1200
     atgcagaagg taaacgagaa ggcacggcga gcaagccgga tactaagaag acggaacaaa      1260
     ggtgttacaa ttgcggaaag aaaggacacc aggctcgtgc ttgcacaaag gcgcaaggcg      1320
     gtccgaaatg tttttcgtgc caggcatacg gccacaagtc caacgagtgt gcgcaaaaca      1380
     aaaaagttgt tcctgctaaa gtgaatgtga tggaagaaag tgagggattg atcgacgttt      1440
     tgttccacaa tacggtggta acggctttgt ttgacagtgg tagcaaacat aaccttatga      1500
     caaaaacgtg tcataacaag atcgggggta ctactctcag tgataccaca acgtgtttcc      1560
     gtggttttgg aggcgtgaaa acaaaagcca tcggtttttt cgaaacggac atcacggtaa      1620
     actttaacgt attccgtgga ataaggttct ttgtagtacc gagtgagtgt atgtcatatg      1680
     aagcaatttt gggacgagat tcgctgaact attttggtgt gacaatgaca acagctgggc      1740
     tagaaataag cccgtgtgat acaacaaatg aagttctttc gatcttgcgc gaaaaagatg      1800
     acgaaatcga tgttccccca cgattcgcaa aagaagtaaa agagttgatt tcggcttatc      1860
     aaccaagtaa agaagtgaga tgtcgtgtcg cgacaaaaat cattttgcat gatgacacac      1920
     cagtgcgttc ctcacctagg cgattcgcgc cgggtgaaaa ggctgtgttg gagaaaacaa      1980
     tcgaagaatg gttggcggcg ggtataatca aagagagtga gagtgatttc gcgagtcccg      2040
     ttacgcttgc gcgaaagaag gacggcacat tacgtgtgtg tgtggattat cgcgaactaa      2100
     atcgaaagat ggtgaaggat tgttttccta tgagaaacat tgaagatcag attgatcgct      2160
     tgaaatcggc aagtgttttt accacgctcg acttgaaaaa ttcgtttttt catgttccgg      2220
     tagaaacagc gagtcagcgg tacaccggtt ttgttaccca cgcgggacag tacgagtttc      2280
     ttagaactcc ttttgggtta gcaaacagtc cagcaagctt cagccgattc gttgctgatg      2340
     tgttccgcga attgataaaa gacggtcgaa ttctagtgta cgtggacgat ctgataattc      2400
     catcgtgtga cgaagaaaca aactttcaaa caatcaggga gttattgaaa gtagcgagtg      2460
     aatacggtgt acagtttaac tggaagaaat cgcagttttt gaaaaaagaa gttgagtatt      2520
     taggttatgt gataagcgga gggtgttacc gcatatcacc agccaaatta cgatcagtgc      2580
     agtttttccc ggtaccgaag aatgtaaagg agcttcagcg atttttgggg ctaactagtt      2640
     atttccgaaa atttattgcc gggtacgcga cgatttcaaa acctttgacg aatttactgc      2700
     agaaagatgt tccgtttgag tttggtgaag cacagcaaaa cggctttgac gagttgaaac      2760
     gcgttttggt aaccgaccct gtgttgcgga tttacgacga aaatagtgaa actgaactgc      2820
     atacggacgc gtctaaatat ggctacggag ctatattaat gcaaaagaat gacgatgata      2880
     agtttcatcc ggttgcgtac atgagccaac agacatctag tgccgagaag aactatagtg      2940
     cgtatcactt ggaggttttg gcagtggtcc gtgctgtgga aaagtttcgt gtttatctgt      3000
     ttggcattaa gtttaaaatt gtgactgatt gtgcggcttt taagcaaaca ttaaagtcga      3060
     aagaactatc ggctagaatc gcgagatggg ctttaatgct cgaagagtac gagtacgaag      3120
     tagtgcaccg atcaggatca tcgatgaagc atgccgatgc tttgagtaga gcaccagtga      3180
     tgatagttac gcacgaccca atgatcgagg ctctcaaaag gtcgcaaaaa agtgatgaac      3240
     gtattaaggt gattatcgaa ctattgaaaa ctcaagagta tgaagattat gtgatgagtg      3300
     atgatttgtt gatgaaagtg gttcaaggta gggaacttat cgttgtacca gcagatatgc      3360
     agagtgagtt gatacgtaga gcacacgata atggtcatct tggagcgcgt aagttagagg      3420
     ccattattca aagagagttt tatattacga acttgactga gaaagtgaaa caaatcatcg      3480
     cgtgttgtgt gaagtgtatc ctctctgagc ggaaaagagg aaaaacggaa ggactactaa      3540
     actcgattcc gaagggtgat attccgtttg acacgtatca cgtggatcat ttaggtccaa      3600
     tggacattac ggagaaaagg tataggtacc tgtttgtggt agtagatgcg tttagcaagt      3660
     atacctggat ttaccctact aagacgacga attcgtttga agttattcaa cgacttaaga      3720
     tgcagagcga agcatttggt aatccaaggc gtattgtgca tgataaggga accgcgttta      3780
     cgtcaaacga tttcaagcaa tactgtgaga acgaagacat tgcacgagtt gaaattacga      3840
     caggagttcc acgcggaaac ggacaagtgg aaagagtaaa ccaagtcata attggtatgc      3900
     tgaagaagac gagtgcgaac gattctacga agtggtacaa acacatcgca aatatccaga      3960
     aatggataaa ctccagtccg cactgtagta tcggtgtatc tccatttgaa gccatgtttg      4020
     gcgtaccgat gcgcaacgag ggagatctcc gattgggcga gctcatggag gaaattcgag      4080
     tggcccaatt taacgacgaa cgagagaagt tacgggccgg agctagatcc tgcatcgaca      4140
     aggcgcaaga agagcaacgc agatcttaca atttacgagc gcgaccggca accgtctaca      4200
     aggaaggaga tttggtggtc atcaagcgga cgcagttcgg ccctggacgg aagtatgctg      4260
     cggaatatct tggtccgtac aagataacga gtgttcgacc acatgatcgg tacgatgtga      4320
     cgaagatcaa cggtgaaggg ccaaagacga cctcgacggc tgcatcacac atgaagccat      4380
     accggatgta atacggtgga gatcctccgg ggcggaagaa tctgtcgagg aaaggccg        4438
//
ID   Gypsy-7_AnFu-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-209
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2959-2959 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 209 BP; 52 A; 29 C; 74 G; 54 T; 0 other;
     tgtgaagttg ggtgacgcga gcgtgtgagc gagagtgtgt gtgagcgtgt gagcgaggat        60
     gaacgtgagg atgaacgcga gcgtgtgagt gtgagttcag cgcgataagg gaatataagc       120
     agcgcgcgcg gctgaactgg ggcagtttgg atttgggttt aaatgaataa agcgaaattt       180
     gttttgaact tctaaattcc tttctcaca                                         209
//
ID   Gypsy-7_AnMe-I repbase;    DNA;    INV; 4355 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4355
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6819-6819 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..964
FT                 /product="Gypsy-7_AnMe-I_1p"
FT                 /translation="MTTPETAVPIEEEQEIAATGPRISFPTFDTEDVETWF
FT                 VCLEAAFYVNAVKLDKHKFNAVIVALGSQAKHFHSAIAVCNKAGTIGKYVT
FT                 IKKAVIDHFQPSENQRLTSLLSGVSLGDQKPSQLLAQMRRMGGDDCPDTIL
FT                 SNIWLRALTPTIRSIIAAVPSASLDEQATIADKIMEAPHSDVLAVSARSAE
FT                 NRHEPTAQIAALECKIEALSQRLEEVLAVQQPRSYEHRPRQRSRIREPWGR
FT                 RSPSQPRNKSPRRWICWFHLRFGNKAERCEKDHPNDHNTRCIFFDELMPTQ
FT                 QKK"
FT   CDS           916..4335
FT                 /product="Gypsy-7_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="HSMHFFRRADANTTKKIVRFLLPARDTHVKPSQTFIS
FT                 SPHSATRTQTFILSSHSAPRSHSPYTEPHIPPNATRSETLRFAENTITHGE
FT                 TPLAPGNAHTVDRPQPHSPSLAPARSESNTNTNSEQICRIHITDNISHHRF
FT                 LIDTGAEISVIPPNTKERLNPSPSRKLSAANGTQIATYGQKTLSLDLGLER
FT                 KFSWTFVVADVSTPIIGADFLEFYDLLADAKRKRLIDNSTKLEIQSTKSQN
FT                 KNTISTICINKQFASIVERYKDITKLNTKHKTTKTVEHQILTTGPPIFCQP
FT                 RRLPLEKLQAAKTEFQYMVEQGICKPSKSSWASPLHMVKKPNGNWRPCGDY
FT                 RGLNAVTEPDRYPIPHIQDVSNILHGNNVFSCIDLQRAYHQIPVAKQDIPK
FT                 TAITTPFGLYEFNFMTFGLRNAGQTLQRYLHAIFCDLPYVFPYIDDLCIAS
FT                 SSIENHKMHLDTVFKRLRENGLAINADKCQIGKSSVTFLGHLITPEGIKPN
FT                 PSKVQAIIDFPRPKVTKQLKTFLGTINFYRRFIPHAAANQHVLQKMIPGNV
FT                 RNDNTPLNWNKETIDAFETSKKELASATLLAHPSPYAKLSLYVDASNVAIG
FT                 GALHQVEKKGITPLAFFSKKLCTSMLKASTYDRELYAIYESVKYFRDFLEG
FT                 RTFCIYTDHKPLVTAFHQRPERANPTQQRRLAFISEYSTDIRHIPGNENNV
FT                 ADMLSRIEAVSSDSIDYEKMAELQRMDNDIQKFIRNPPQSSSIVLKELELP
FT                 SKKGTLYCDVSTQEIRPLVPEALRAHVIKKIHGISHPGIRATTHLVSQRYV
FT                 WPALRKDCKQFVKNCIECQRSKVTRHNFTEAEHIEVPQHRFQHVHMDLIGP
FT                 LPPSEGNAYCLTLIDKFTRWPEAIPLPNMTADTVARAFVTHWIARFGVPSK
FT                 ITTDRGRQFESDLFKKLSETLGIDHLKSSPYHPQANGHIERVHRQLKAALM
FT                 CHDRSRWTETLPLVLLGMRSTLKEDIGATVAELTYGTCLRLPGEFFDHNKT
FT                 IANATCEFVNNLRVVMRKLKPTQTSNHNTNRGVYVHSSLDSCTHVFVRVDK
FT                 IRPSLTPPYDGPYKVLDRNKKTYTLEVKGXKASISIDRLKPAYVDSANQDS
FT                 EVEKNTQQHSETKRIPVHQSRYGRNIYQPXKF"
XX
SQ   Sequence 4355 BP; 1441 A; 1104 C; 844 G; 964 T; 2 other;
     ctggtgaccc cgacgtgatc gtgaccgaaa gtgaattttt acacgatttt tttttccatt        60
     tttttttggg ctgcccgaaa tgacgacacc cgaaactgcc gtgcctatcg aagaggaaca       120
     ggagatcgcg gcaacgggac cgcgtatcag tttcccgacg ttcgatacgg aagatgtgga       180
     gacatggttc gtgtgtctcg aggcagcgtt ttacgtgaac gcagtgaaac tcgacaagca       240
     caagttcaat gcagttattg ttgcactcgg gtctcaagcc aaacactttc actccgccat       300
     cgcagtatgc aacaaagcgg gcacaatcgg caaatacgta acgattaaga aggccgtcat       360
     cgaccatttt caaccctcgg agaaccaaag gttgaccagc cttttatcgg gcgtatccct       420
     cggcgaccaa aaaccaagcc aactcctggc ccaaatgcgt cgaatgggag gagacgattg       480
     ccctgacacc atactatcca acatttggtt gcgagcgcta acaccgacga tacggtcaat       540
     tatagcagca gtgccatccg cgtcattaga cgagcaagct acgatagctg acaaaattat       600
     ggaagccccc catagcgatg tcttagcagt gagcgcacga tccgctgaaa accgtcacga       660
     gccgacggca caaatcgctg ccctagagtg caaaatcgaa gccctttcgc agcgtcttga       720
     ggaagtgctc gcagtgcaac aacctagatc gtacgagcat cgacctcggc aacgttccag       780
     aataagagag ccatggggca gacgttcccc ctctcaacca cgcaacaaat caccgcgcag       840
     atggatatgc tggtttcatt tgcgttttgg caacaaagcc gaaagatgtg agaaagatca       900
     tccaaatgat cataacactc gatgcatttt tttcgacgag ctgatgccaa cacaacaaaa       960
     aaaatagttc gatttttact cccagcaaga gacactcacg taaaaccatc tcaaacattc      1020
     atttcatcac cacatagcgc aacacgaact caaacattca ttttatcatc ccatagcgca      1080
     ccacgaagcc actcaccata cactgaacca catataccac caaacgctac acgttctgaa      1140
     acactcagat ttgccgagaa caccatcact cacggtgaga caccactcgc acctggtaac      1200
     gcacacaccg tagatcgacc tcaaccgcac tcaccatcgt tagcacctgc gagaagtgaa      1260
     agcaacacta acactaactc tgaacaaata tgccgaatac acattaccga taacatttca      1320
     catcaccgtt ttttaatcga caccggcgcc gagatatcgg ttattccacc aaatacgaaa      1380
     gagagactta acccttcgcc ttcacgaaaa ctttcagccg caaacggcac acaaatagct      1440
     acatatgggc aaaaaacgtt aagtcttgat ttgggactcg agagaaaatt ctcatggaca      1500
     tttgttgtcg ccgacgtcag tacgcctata ataggtgcgg attttctcga gttttacgat      1560
     ctattagccg atgctaagag aaagagatta atagacaact cgacaaaact cgagattcaa      1620
     agtacaaaaa gtcaaaataa gaatactatt tcaacaattt gcataaacaa acaatttgcc      1680
     agcatagttg aacgatacaa agatatcaca aagctgaaca ctaaacataa aactactaaa      1740
     acggtagaac accaaatact cactactggt ccgcctattt tctgccaacc acgcagattg      1800
     cctttagaaa aactacaagc agctaaaacc gaattccaat acatggtaga acaaggcatt      1860
     tgcaaaccgt ctaaaagcag ctgggccagt ccactgcaca tggttaaaaa acctaacggt      1920
     aactggagac cgtgcggcga ctacagaggc ttaaacgcgg tgaccgaacc agaccgatat      1980
     cctataccac acatacaaga cgtaagcaat atactacacg gcaataacgt gttttcatgt      2040
     atagatctgc agcgcgcata ccaccagatt cctgtagcaa agcaagacat cccaaaaaca      2100
     gccataacca ctccgtttgg cttgtatgag tttaacttta tgacgttcgg gttgagaaac      2160
     gctggacaaa ccctacaacg ctacctacac gcaatatttt gcgatctccc gtacgttttc      2220
     ccgtatatag atgatttatg catcgcctcg agtagcatag aaaatcacaa aatgcacctc      2280
     gatacagttt ttaaacgcct aagagaaaat ggtttagcaa ttaacgctga taaatgccaa      2340
     ataggaaaat cttccgtaac tttcctcggt catttaataa ctccggaggg aattaaaccg      2400
     aacccatcaa aagtacaagc cattatcgat ttcccaagac cgaaggttac aaaacaacta      2460
     aaaacattcc ttggcacgat aaatttttac cggcgtttta tcccacacgc ggctgcaaat      2520
     cagcacgttt tacaaaaaat gataccagga aatgtgcgaa atgacaatac tccacttaac      2580
     tggaacaaag agacaattga tgcatttgaa acctctaaaa aagaattggc gagtgcaaca      2640
     ttactcgctc atccatcacc atatgctaaa ctcagcttgt acgtcgacgc ttcgaatgtt      2700
     gccataggag gcgcactcca tcaggtggaa aaaaaaggca taacaccctt agcattcttt      2760
     tcaaaaaaac tatgcaccag catgctaaaa gcaagcacgt atgataggga actgtatgcc      2820
     atatatgaat cagttaaata ctttcgcgat tttcttgaag gacgaacatt ttgcatttac      2880
     accgaccaca agcccttagt gacggcgttt caccaacgtc cagagcgagc taaccccact      2940
     cagcagcgac gactggcttt cattagcgaa tattcaacag atattcgcca catccctggt      3000
     aacgaaaaca acgttgcaga catgctaagt cgcatcgaag ccgtctcttc cgattccatc      3060
     gattacgaaa aaatggcaga gctacagaga atggataatg acatacaaaa attcataaga      3120
     aacccaccac aatctagctc aattgttctg aaggaattgg aactaccatc gaaaaaaggt      3180
     acactatatt gcgacgtttc cacacaagaa atccgaccac tagttcccga agcactccga      3240
     gcacacgtaa ttaaaaaaat acatggtatt tctcatcccg gcattcgagc taccacgcat      3300
     ctcgtttcac aacgctacgt ttggccagcc ctgagaaagg actgtaaaca attcgtaaaa      3360
     aactgcatag aatgccaaag aagcaaggta actagacaca atttcaccga agcagaacac      3420
     atcgaagtac cacaacacag attccagcac gtgcacatgg atctcatcgg ccccttacct      3480
     ccgtccgaag gaaatgccta ttgtttaacc cttatcgata agtttacgcg ttggccggag      3540
     gcgattccct taccaaacat gacggctgat accgtcgcac gcgcattcgt cacacactgg      3600
     attgctaggt ttggtgtacc tagcaaaatc accaccgacc gcggtcgaca gtttgaaagc      3660
     gatctgttca aaaagctttc cgaaacactc ggtattgatc acctcaaatc ttctccttac      3720
     catcctcagg caaacgggca catcgaacga gttcaccgcc aacttaaagc agctctaatg      3780
     tgccacgatc gatccaggtg gactgagaca ctaccactcg ttttgttagg aatgcgatcg      3840
     acgttaaaag aagatatagg agcaaccgtt gccgaattaa cttatggtac ttgtttacgc      3900
     ctaccaggag agtttttcga ccacaacaaa acgatagcga atgcaacgtg cgaatttgta      3960
     aacaatttga gagtagtgat gaggaagcta aagccaacac aaacatccaa tcataacaca      4020
     aacagaggag tttacgtaca ttcgagttta gatagttgta ctcatgtatt tgtgcgagta      4080
     gataagatca ggccatcact aacacctccg tatgacggtc cttacaaagt attagacagg      4140
     aacaaaaaaa catacacact cgaagtgaaa ggaaawaaag cctcaatctc gattgatcgg      4200
     cttaagcctg catatgtaga tagcgcgaac caagacagcg aagtagagaa aaacacacag      4260
     caacactcag agactaaacg cataccagtt caccaatcgc gctacggtag gaatatttac      4320
     cagccaagka aattttaaaa ggaaggggga tgtga                                 4355
//
ID   Gypsy-7_AnMe-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-187
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6810-6810 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 187 BP; 66 A; 54 C; 30 G; 37 T; 0 other;
     tgtggtgaat atataaaggt acaaacgctc aacttgagga cataaaccgg gctctgagcc        60
     gaccacacaa tctccccacg attatacgaa taaacgctct cttctatttc accaacctaa       120
     gagaacggac gtgagtaaaa ccgctacaaa ctcatcatcc gaaaccctac ttggaaaacc       180
     ccccaaa                                                                 187
//
ID   Gypsy-7_AnSt-I repbase;    DNA;    INV; 4298 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4298
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 792-792 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..4276
FT                 /product="Gypsy-7_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MEQLVEEFTRTGLVRKCEMAGLPTTGTKEDLAMRLVE
FT                 AQANEQVDMHAHDNDVTGVSGFHDAEGSVSGNAPKSEPASVAYMQPYSFRD
FT                 VEDSIEPYGEDVHRDIKMWFKEFEGVATMARWTDEQKFIMTRRKMVGVARS
FT                 FLSTLKDVASYAVLRAALVKEFGHIIRASDVHRRLVTRHKKRSESVLEYLY
FT                 EMQRIASNVEIDESSLVEYIADGITAEARTRATLYRARTIMELKEELLFLE
FT                 RAEKKDQERREKTSRNVVEPSCRRKCYSCGGFGHESNKCAKAGRRLTCFKC
FT                 GEAGHIARNCVPRNGREERTSGNVNVVEHTKVLTKKVLLGTKECEALVDTG
FT                 SEVSLVRQDFIGEKTMKPSCRVIRGIGGVYSSVCGEIETTITIEEQDYPIS
FT                 VLVVTADTIRQPMIVGMDFLQKVPYCILNGDISFGSRVKVMPENWIFNINV
FT                 ESQEVDAPVKYKDDIAKMIRDYVPANSSCSDSELHIRLYDNVPVRAYPRRL
FT                 APLERTAVKAQVEEWLCDGVVRSSNSPYASAIVVVPKKDGTRRVCVDYREI
FT                 NKKIIRDSFPMPVVEDQIDQLESARVYSTLDLKNSYFHVPIAEESRKYTSF
FT                 VTQEGQYEFCRAPFGLCLSGSAFNRFINSVLRELINDGIVLTFVDDIIIPS
FT                 KDEQQGMELLKRLLKVAEKAGLRFNWKKCSFLQRRIEYLGYTIYEGRIEPS
FT                 PLKVEKVKGFPLPCTVKQMQRFYGLASYFRKFVANFAEIMRPMSMLLRKQE
FT                 KFEVNDEVRQAFIHIKTVLSQYPVLRIFKSGLETEVHTDASKEALAGILMQ
FT                 RAEDDGKFHPCYYYSRLTNQAEKNYHSFDLESLAVVESVKKFRCYLLGQRF
FT                 KLVTDCVAFTQSVAKKNPSARTSRWLNVLAEFEYEVEHRSADRMRHVDALS
FT                 RANVMTITSAVCARIAAAQRADPPTSEIIRRIEQDGNFDEFTMMGGVLYKG
FT                 SMGAERLYVPSSMQGEIVRSAHEQGHFGVKKTKERIRSDYFIPNVDGKIEE
FT                 CIASCVRCIVGERKRGKCEGVLHPIPKGCVPLDTFHVDFLGPMPSTRKMYN
FT                 YIFTIVDAFTKFVWLFPVKSTTAEEAIRRMQIVANTFGHPRRIICDRGTAF
FT                 TSGAFEKYCAENNIELHKIVTGVPRGNGQVERIHGIIIPVLTKLSVEKPDE
FT                 WFKHVDKVQTTINNSWQKAIGMTPFELFIGVKMKTKDDVILAQILREEMQT
FT                 VFNEGREELRLNARDSIGRIQLENRKYYNLRRKKAKKYEVGDVVALPFTQF
FT                 GTGRKVKRRFLGPYIVQKVLPNDRYEVRKLDEGEEGPCRTTTAGDMLKDWS
FT                 HSH"
XX
SQ   Sequence 4298 BP; 1277 A; 746 C; 1212 G; 1063 T; 0 other;
     tgggggctcg tccgggaagg agtacagttc ttaagtaact attgtgctgc gtgcgctagt        60
     tgcactgtgt gtgcgaatga gtattgtgct gtgtgcgcga gttgtactgt gtgtgcgaaa       120
     tactattgtg ctgtgtgcgc aagctgcact gtgtgtgcaa agaagtgttg cactgtgtgt       180
     gcgaagcgac ttgtgcgctg tgtgtgtgta accgaaaaag gattttatac tgtgcatcga       240
     gttgcgttct gtgtggggag ccgactgtga caaggattgt gctgtgtgcg aacaacaaca       300
     ttgtgctgtg tgcagaagac ggtgaaaaac catggaacaa ctggttgaag aattcacacg       360
     tactggtttg gtacgaaagt gtgaaatggc cggattgcca actactggca caaaggagga       420
     tttagccatg cgcttagtgg aagcgcaagc gaacgaacag gttgacatgc acgctcatga       480
     taacgacgtt acgggtgtga gtgggtttca tgatgcggag gggtcggttt caggaaatgc       540
     accgaaatcc gaaccagcaa gtgtggccta catgcaacca tattcgtttc gtgatgtgga       600
     ggactcgatc gaaccatacg gcgaagatgt acatcgcgac atcaaaatgt ggtttaagga       660
     gttcgaaggc gttgccacca tggcaaggtg gacggatgaa caaaagttca taatgacgcg       720
     tcgaaaaatg gtcggcgtgg cccggagttt cctatcaacg cttaaggatg ttgcgtcata       780
     tgcggttttg cgtgcggcat tagtgaagga gttcgggcat atcatccgcg ctagcgatgt       840
     gcaccggcga ctcgttactc ggcacaagaa gcgcagtgaa tcggtattag agtacctgta       900
     cgaaatgcaa cgcatagcga gcaatgtgga gattgacgag agcagtctcg tggaatatat       960
     tgccgatggc ataacagcag aggctcgaac cagagccact ttgtataggg caagaacgat      1020
     catggaacta aaggaagaac tattgttcct cgagcgggcc gaaaagaaag accaagagag      1080
     acgggaaaaa acttctcgga acgtcgtcga gccaagctgt agaagaaagt gttacagttg      1140
     cggtggcttt ggacacgagt ctaataagtg cgctaaagca ggacgcaggc ttacgtgttt      1200
     taagtgtggc gaggcggggc atattgcccg taactgtgtg ccacgaaacg gcagagaaga      1260
     aagaacatcg ggaaatgtaa atgtggtgga acacacaaag gtgttgacga aaaaagtgct      1320
     ccttggaact aaggagtgtg aggctctcgt ggacactggc agtgaagtgt cgttggtcag      1380
     gcaagatttt attggtgaaa agacgatgaa accatcgtgt cgagtgattc gtggaatcgg      1440
     aggcgtgtac agtagcgtgt gtggggaaat cgaaacaacg atcacaatcg aagaacagga      1500
     ttaccccatc tcggttttag tggtaacagc ggacacaatt cgtcaaccaa tgattgttgg      1560
     catggatttt ctgcagaagg tgccgtactg cattttgaac ggtgatataa gttttggctc      1620
     aagagtgaaa gtgatgccgg agaactggat tttcaacatc aatgtggaat cacaagaagt      1680
     cgacgcacca gttaaataca aagacgatat tgcgaaaatg attcgggatt acgtgccagc      1740
     aaatagctct tgtagtgaca gcgaattgca cattcgatta tacgacaacg tcccagtgcg      1800
     cgcgtaccca aggcgtcttg caccattgga acgaacggcg gtaaaagcgc aagtggaaga      1860
     gtggttgtgt gatggtgttg tgcgttcatc aaatagtcct tatgctagtg cgatcgtcgt      1920
     tgtgccgaaa aaagatggaa cgcggagagt gtgcgtggac tatcgagaaa taaacaagaa      1980
     aatcattcgt gactcgtttc ctatgccggt agtagaagat caaattgacc agttggaaag      2040
     tgctcgtgtt tattcgacat tggacttaaa aaattcgtac tttcacgtgc cgattgctga      2100
     agaaagtcgt aagtatacat cctttgtgac gcaagaagga cagtatgagt tttgtcgtgc      2160
     gccgtttgga ttgtgcctta gtggtagtgc gtttaacagg ttcataaatt cggtattgcg      2220
     tgagttgatt aatgatggaa tagtgttaac atttgtagac gatataataa ttccatcaaa      2280
     ggacgaacag caaggtatgg aattgttgaa acgtttgttg aaagtggcgg aaaaagcagg      2340
     attacgattt aattggaaaa agtgttcgtt tttgcaaagg cgtatcgagt atctaggata      2400
     cacgatatat gaaggacgta tagaaccgtc gccgttaaag gtagaaaaag tgaagggttt      2460
     tccgttaccg tgtactgtga aacaaatgca acgattttat ggattggcta gttatttccg      2520
     gaagtttgtg gctaattttg ctgaaataat gcgtccgatg tcaatgttat tacggaagca      2580
     ggagaaattt gaagtgaacg atgaagtgcg acaagcgttt attcatatta aaacggtttt      2640
     gagtcagtac ccagtgctac ggattttcaa atcaggactt gaaacggagg ttcacactga      2700
     cgcaagtaag gaagcgttgg ctggcatttt aatgcagcgt gcggaagacg atgggaagtt      2760
     ccatccctgc tactattata gccggctgac gaatcaagca gaaaagaatt accattcttt      2820
     tgatttggaa tcgctggctg ttgtcgagtc agtgaaaaag tttcggtgtt atctgctggg      2880
     acaacggttc aagttagtga cagattgcgt cgccttcacg caatccgtgg caaagaaaaa      2940
     tccgagtgcc cgaaccagta gatggctgaa cgtgttggct gaattcgagt atgaagtgga      3000
     gcatcgatcg gcggacagga tgcgacacgt tgatgcctta tcccgagcaa atgtgatgac      3060
     gataacatca gctgtatgtg cgcgaatagc ggctgcgcag cgtgctgatc cgccgacatc      3120
     tgagataata cgtcgaatcg agcaggacgg aaatttcgac gaattcacga tgatgggcgg      3180
     tgttctctac aagggcagca tgggagcaga aagattgtac gtaccgtcca gcatgcaagg      3240
     tgagatcgtt agaagtgcgc atgaacaggg gcatttcggg gtgaaaaaga caaaagaacg      3300
     cataagatct gattacttta ttcctaatgt ggatgggaag atagaagaat gtattgcatc      3360
     atgcgtgaga tgcatagtag gggaaagaaa gcgaggtaaa tgtgaagggg tactccaccc      3420
     aatcccaaaa ggatgtgttc ctctggatac gtttcatgta gattttttgg ggcccatgcc      3480
     gtcgactaga aaaatgtata attacatttt cacaattgtc gatgcgttca ccaaatttgt      3540
     ttggttattc ccggtgaaat ccacaacagc agaagaagcg ataagaagaa tgcaaatagt      3600
     agcgaatacg ttcgggcatc cgcgaagaat tatatgcgat agaggtacgg cgttcacgtc      3660
     tggtgcattt gaaaagtatt gtgcggaaaa taatatcgaa ttgcataaaa ttgtaacagg      3720
     agttccgcgg ggaaacggac aagtggaaag gatacatggg ataataattc cagttctaac      3780
     gaaattgtca gtagaaaaac cagatgagtg gtttaagcat gtcgataaag ttcaaaccac      3840
     cataaacaat agctggcaaa aggcgattgg aatgactcct tttgagttat ttattggagt      3900
     gaaaatgaaa acaaaggacg atgttattct tgcacagata ttaagagaag aaatgcaaac      3960
     ggtgtttaat gaaggtcggg aggaattgcg tctgaatgcg cgagacagca ttggtaggat      4020
     tcagttggaa aatagaaagt attacaatct tcgccgcaag aaagctaaaa aatacgaagt      4080
     tggagatgtg gtagcacttc cctttaccca gtttgggaca ggtagaaagg tgaaaagaag      4140
     atttttggga ccgtatatcg ttcaaaaagt gttgccaaac gaccggtatg aagttcgtaa      4200
     attagatgag ggagaagagg gaccatgtcg aacgaccacg gcaggagaca tgttaaagga      4260
     ttggtctcat tcacattgag taacatcagg aaaggccg                              4298
//
ID   Gypsy-7_AnSt-LTR repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-184
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 781-781 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 184 BP; 66 A; 36 C; 42 G; 40 T; 0 other;
     tgtgggaatg agtgcctgtg aatagggacc acaacgctca cgaagaaggt gagtgacgct        60
     agggagtata aataagcagg acatcgagcc aaaaaggtag tcgctcctaa ttatccatcg       120
     ggtcaagaca cagcgtacat tccaataaag aataaataaa acttagaact atctctttct       180
     taca                                                                    184
//
ID   Gypsy-7_BM-I repbase;    DNA;    INV; 4963 BP.
XX
AC   nscaf2766;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_BM_;
KW   Gypsy-7_BM-LTR; Gypsy-7_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4963
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 989-989 (2010).
XX
DR   Genome; nscaf2766; Positions  734699  739661.
XX
CC   Positions [3489-3998] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..4394
FT                 /product="Gypsy-7_BM-I_1p"
FT                 /translation="MMSGNAQRGRRRITRRERSSSPSPIEEILTRLRALED
FT                 RSRAHVETQVTTPPVLVPVTVSETPPSPREMVSAEMGTPTLTSRASNMESA
FT                 QIEDMVTHTAERLLSAISRAQVRSNHYFVSEFDPSVHDFDTWSDEVEKARI
FT                 LNRWDDGECLARVGHCLKGEARTWLSQWTSNVRTWSNFKLELKSLCPRTVD
FT                 VANILYEVMRTESDKYSTYAEYARKSLLKLRIVKGLSDELLTAIIVRGITD
FT                 PQIRAMATNAKLSSDSIVEFLSSFVKPSNANNYNKRVYSNAPNRLNKHFNH
FT                 SPLKRQHDSRDTKTVRIKCYRCHQFGHTFSNCYKRPNNITPNSPSSDEQAI
FT                 ALPSTSRGDISKCAFCKKAGHSEDDCFAKERSRSRNKSGVNFCREQAGSYK
FT                 NRDVTTAVISGIPLDVLIDSGSCVSLMSENLVKYFPCKMKPTTQLLCGLGG
FT                 KEVKSQYLVTLPVEFSDITLETDFYIVDSNHLNVPVIIGTDVLNRDGVAYV
FT                 RTSSCQRVVRSEGITNNVMQVNSISLSDRVNTPVTGYNREQLLAVLDRYSK
FT                 YFLSGTATTTVKNSEMHIKLTTNVPVYYRPYKLSHDEKLKVRSIVRDLLDK
FT                 GIIRESDSEYASPILLIKKKDGSDRMVVDYRALNRITVKTRHPLPLINDYI
FT                 DRLGNARWFSALDMVSGFHQLRMAEESIHKTAFVTPEGHYEYCKMPYGLAN
FT                 APIVYQKTITKSLKTFIDAGQVLVYIDDVLLMTDGLDENLALLESVIKTLT
FT                 EAGFSINLKKCTFLTNEIEYLGRIISNGQVRPSTYKIDALVKSPRPNNVKQ
FT                 VRQFLGLAGYFRRYIPNYATKTALIAALTKKGVNFHWSNEHEKARQEIISH
FT                 LTNEPVLAIFDPELSTELHTDASSIGYGGIVMQVHNDGRRRVVAYFSKLTV
FT                 GAESRYHSYELETLAVVKSLQHFRQYLIGKPFKIITDCNALKMTQRKKDLQ
FT                 PRVARWWIYMQDFDFTLEYRKGCLMSHVDYLSRNPVNVVDLVQKPQNWAQV
FT                 AQAGDEETLTLLEKLNNGQLDNTRYVKRNDLLYYKYDVTGEQARYLCYVPK
FT                 AFRLSLLRVFHDEHEHIGVDKTVDLILQHFWFPGLRQFVSKYVTHCVVCIS
FT                 HKQVPRAPLQPISSWHKAPVPFDTIHVDVLGPLRESEGHKHVLIMIDAYTK
FT                 YCLLHAVTKQNCSELQRVMTQVISLFGTFKRLVCDRSRMFDNHEFINWISN
FT                 FGIEMHFITPEMHQENGQVERYCRTVLNMIRVEVNYNDNDWSKVLWKLQLV
FT                 LNVTKQKTTQYSALNLLVGTDSTTPLINALIKDITCEGSNPNRDAIREIRR
FT                 QRAEGLIRENKDKQDSYVNKNRKPPKKFNVNDLVYVIKSSQSTGKLDSGMR
FT                 GPYKITKVLPNDRYELQLLAGAYGKKSQAAAGYMILWKGEWTPETCAAFFE
FT                 GICFIIDALFAL"
XX
SQ   Sequence 4963 BP; 1508 A; 970 C; 1112 G; 1373 T; 0 other;
     tcagaagtgg gattcgaagg ctgaaaagct gttgaggcca catctgcttt agtaaacgaa        60
     tcgtagcttt cctcagccga atttagtggg ctgaagttcg gacggagttt agctacatga       120
     tgtctggtaa cgcccagcgt ggtagacgca gaatcactcg ccgtgagcga agttcttccc       180
     caagcccgat tgaagaaatc ctgacgagac tgcgcgcact ggaggaccgg tcacgtgccc       240
     atgtggagac gcaagttact acaccaccgg tgttggtgcc agtcacggtg tcagagacgc       300
     cgccttcgcc tcgtgagatg gtgtccgcag aaatggggac gccgacattg acgtcacgcg       360
     ctagcaatat ggaatcagcc caaattgaag acatggtgac acacactgca gagcgtctct       420
     tgtccgctat aagccgtgct caggtcaggt ccaaccatta ttttgtctca gaatttgatc       480
     cgagtgttca tgacttcgac acgtggtctg atgaagtgga aaaagctcgt attttgaacc       540
     gttgggacga tggagaatgc cttgctcgcg tcggacattg tttaaaaggg gaagctcgca       600
     cctggcttag ccaatggacg agtaatgttc gaacatggtc aaatttcaaa ctagaattaa       660
     agtcgctatg cccacgtact gtcgatgtcg cgaacattct atacgaagta atgcggacag       720
     agtctgataa atactccacg tatgctgagt atgctcgtaa atcgctttta aaattacgca       780
     tagttaaggg actcagcgac gagcttctaa ccgctattat tgttcgtgga attacagatc       840
     cacagattcg tgctatggcc actaatgcta aactatcttc tgactcgata gtggagtttt       900
     tatcaagctt tgtcaaacct tcaaacgcaa acaattataa caagagggta tattcgaatg       960
     ctccgaatcg gttaaataaa cattttaatc atagtccgtt gaagcgtcag cacgattcta      1020
     gagatacaaa aactgttaga attaaatgct atcggtgcca tcaattcggt catacatttt      1080
     ctaattgtta taaacggcct aataatatta cacccaattc tcctagcagt gatgaacaag      1140
     caattgcact accgtcaaca tctcgcggcg atatttcaaa atgtgcattc tgtaaaaagg      1200
     caggtcactc agaggacgat tgtttcgcaa aagaacgctc taggtcacga aataaaagtg      1260
     gtgttaattt ttgccgtgaa caagcgggta gctataagaa ccgcgatgtg acaacagccg      1320
     taatttctgg gataccgtta gatgtattaa tagatagcgg atcgtgtgtc tctttaatgt      1380
     cggaaaacct agtgaaatac tttccatgta aaatgaagcc tactactcag ttgttatgcg      1440
     gcctaggcgg taaggaggtt aagtctcaat atttagttac gctacccgtc gagttcagcg      1500
     acataacttt ggaaactgat ttctatattg tagacagtaa tcatttaaac gtacccgtta      1560
     ttatcggtac tgacgtatta aatagggatg gggttgccta cgttagaact agtagctgcc      1620
     aacgtgtggt gcgcagtgag gggatcacta ataacgttat gcaagtaaat tcgatttcat      1680
     tatctgatcg agtaaataca cctgttactg gatataatag ggaacagtta ttagccgttc      1740
     ttgatcggta ttccaaatac tttttaagtg gtaccgcgac cacaacagtg aaaaatagtg      1800
     agatgcatat aaaattaaca actaatgtcc ctgtgtatta tagaccctat aagctgtcgc      1860
     acgacgaaaa gttaaaagtt cgctccatcg ttagagattt gcttgataaa ggcattattc      1920
     gcgagtccga ctcggagtac gccagtccga tcttactaat aaaaaagaaa gatggttctg      1980
     atagaatggt ggtggactat cgcgctttga atcgaatcac cgtcaaaact cgacaccctc      2040
     tccctttgat taatgactac atagatagat taggtaatgc gcgctggttc agtgcgctgg      2100
     acatggtttc tggatttcat caacttagaa tggccgagga gtcaattcac aagaccgcat      2160
     tcgtaacccc cgaaggtcac tacgaatatt gtaaaatgcc ctatggtcta gcgaatgccc      2220
     ctatcgtata tcagaaaacc atcacaaaat cactcaaaac cttcattgat gctggacagg      2280
     tcttagtgta tatcgatgat gttttattaa tgactgacgg actggacgag aatcttgccc      2340
     tgttagaatc tgtcataaaa acactaacag aagcgggttt ctctattaac ttgaagaaat      2400
     gtacattctt aacaaacgaa atagagtacc taggaagaat tataagtaat ggtcaggtta      2460
     gaccgagcac ttataaaata gacgcgttag ttaagtctcc acgaccgaat aatgtcaaac      2520
     aggttcgaca attcctgggt ttagcaggat attttcgaag atacattccc aactatgcta      2580
     ctaaaactgc actcattgcc gctttaacaa agaaaggtgt taactttcat tggagtaatg      2640
     aacatgaaaa agcgcgccaa gaaataattt ctcacttaac caacgaacca gttttggcaa      2700
     tattcgatcc ggagctgtca actgaattgc acacggatgc gagttcgata ggttatggag      2760
     gaattgtcat gcaggtacat aatgatggac gtagacgcgt agtcgcttat ttcagcaagt      2820
     tgacagtggg tgctgagtca aggtaccaca gctatgagct ggagaccctc gcggtagtaa      2880
     agtcattaca acattttaga caatatctaa ttggtaaacc ttttaaaatt atcactgatt      2940
     gtaatgcttt aaaaatgacc cagcgtaaaa aggatctcca acccagagtt gctagatggt      3000
     ggatatatat gcaagatttc gatttcacgc tagaataccg taaaggctgt ctcatgtcac      3060
     acgtagacta tctgagtagg aatccagtca atgttgttga ccttgttcaa aaaccacaaa      3120
     attgggctca ggtggcgcag gcaggtgacg aagaaacatt aacattgctt gaaaaattaa      3180
     ataacggtca attagataac acgcgttatg taaaacgtaa tgatctcttg tactataagt      3240
     atgacgtcac gggtgagcaa gcgcgatact tatgttatgt accaaaggca tttcggttaa      3300
     gtttgctacg cgttttccac gatgaacatg aacacatcgg tgtagacaag acggttgatc      3360
     tgattctgca gcatttttgg tttcccggac ttagacaatt tgtgtcgaaa tatgtcaccc      3420
     actgcgtagt atgcatctca cataagcaag tcccacgcgc acccttgcaa ccaatatctt      3480
     cgtggcataa ggctccagta ccatttgata cgatacatgt tgatgtactc ggacccttaa      3540
     gggaaagtga aggtcacaaa catgtactca tcatgattga cgcatatact aagtattgtt      3600
     tgctacatgc tgtcacgaaa caaaattgta gtgaactaca gcgcgtaatg acccaagtga      3660
     tttcactttt tggtaccttt aaacgactag tatgcgatag gagtcgtatg ttcgacaatc      3720
     acgaatttat taattggatt tcaaattttg gaatcgagat gcattttatc actcctgaaa      3780
     tgcaccagga aaacggtcaa gtggagcggt actgccgaac cgttctgaac atgataaggg      3840
     ttgaagtaaa ctacaatgat aatgattggt cgaaagtgtt gtggaaatta caactagttc      3900
     taaatgtcac aaaacagaag actactcaat actccgcatt aaatcttctt gttggcactg      3960
     actctactac tccattaata aatgcactaa tcaaagacat tacatgcgag ggctctaatc      4020
     caaacagaga tgcgattcga gaaataagac ggcaacgcgc tgaaggactt attcgcgaaa      4080
     ataaggataa acaagactct tatgtaaata aaaataggaa accgccaaaa aaatttaatg      4140
     ttaatgactt agtctatgtg attaagagct ctcagagtac tgggaagctc gatagtggga      4200
     tgagaggtcc ctataaaatt actaaggttc tgcctaatga cagatatgag ctacaactac      4260
     tagcaggcgc ctatggaaag aagagtcaag cagctgctgg atatatgata ttgtggaaag      4320
     gtgaatggac gcctgagaca tgtgcagcat tttttgaagg tatttgtttt ataattgatg      4380
     cattatttgc tttataagct tgtttacaag ttttttctca ttttttaatt aaataaattg      4440
     tgtaccttac taacataatt taattaacga tcattaagta agctgctcgg tgctcagagg      4500
     aagagactca tgtaaatcct aagtgcgcac ggtattgggt tgaccctgac actcctggga      4560
     aggtatcggg ttgagtcagt agcgccgctg acaagagacc tgtataaatc cgacccttag      4620
     ctatgggtat ctgggttgac ctacaagaga ctgatgtaaa tcctgtttgc acttgctatg      4680
     tgcagggtat ttggttgcgt gggaatagac ctgtataaag cctatgtgac ttggacgctt      4740
     gtgcatacca ttgatttgtt tggctaattg gtgcataatg tgctcataat actgctgaat      4800
     tcataaattt catggtaaat gttaagtgtg ttttctatgt ttgaagaagg cgacgaggag      4860
     caaaatacgt tgtacgcgca gggagttgcc ggtccgtcga cgagttcctg ttaagggctt      4920
     cgaggacgta gccccgtcag gagaaggccg tgttggaaga aaa                        4963
//
ID   Gypsy-7_BM-LTR repbase;    DNA;    INV; 192 BP.
XX
AC   nscaf2766;
XX
DT   19-MAR-2010 (Rel. 15.07, Created)
DT   19-MAR-2010 (Rel. 15.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from silkworm: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_BM_;
KW   Gypsy-7_BM-I; Gypsy-7_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-192
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from silkworm.";
RL   Repbase Reports 10(7), 990-990 (2010).
XX
DR   Genome; nscaf2766; Positions  734507  734698.
XX
SQ   Sequence 192 BP; 46 A; 45 C; 39 G; 62 T; 0 other;
     tgaaactacg aagtagcaac actgtggccg cctatttaag gagcagtgtt gactgtgctc        60
     gctctcttat ctcgccgact gttgtagcgt gcggaagctc tgtccgaact ctctcttgtt       120
     attactgtct aataaggcct gccggccaat aaattgtttt taaaaaccta aaactcgttt       180
     ctgtttatta ca                                                           192
//
ID   Gypsy-7_BrCo-I repbase;    DNA;    INV; 6348 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-6348
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1407-1407 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1146..2330
FT                 /product="Gypsy-7_BrCo-I_1p"
FT                 /translation="MSLQEKKDQFVLVARRILKSELSKNPETLRTYRTDII
FT                 AVYNNSIKYVEDRYDSATEESKKIYLEFIEYIKVRFISCLERLNLSYEFSS
FT                 NRWELVNDSQVKIRVGDNSSDNSDNNSQNSRVNMAQEAKSQLLNTYSKLIP
FT                 EFDGSIGKLHKFISACELLKEDAGANEAVAVGLIKTKLSDLAVPMISTEDT
FT                 VQKVIDAIRRSVKGDSSKVVDAKLMALKQANKTPGDFVKEIEEVTTSLRMA
FT                 FLNEGMPPPLAESQSVTAAVRSLIMNSGNSQVKTVLQAADFQNMNEVTSKF
FT                 LAVTTEQATNKAHIFYNKRFNRYGNRGNYGRGRGHYNNFRGNGRGKQGNNY
FT                 GQNYSRGYNRGNYRGKSYNRGNSNNHQNVRYMSENCPYPQLTLGGESTQSS
FT                 M"
FT   CDS           2249..6019
FT                 /product="Gypsy-7_BrCo-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SSECQVHVGKLPVPPADSGGRIHTIFNVNPSFEDYVN
FT                 VLTNLSPEEVQFLLDTQADISVVKEGEIRNPINLNNKDIIYIKGITDQVIT
FT                 SLGTTLVEVRLGTRWVLHKVHVVPHDFEIPVCGILGRDFLKRFDCNIDYGT
FT                 MTLTVNAFDFSEIINICEGPDRDIFTIPPRCEVIRYFKVSKNISSYEDKVI
FT                 HPHEIMPGVLIARSIFNPEKPFLRVMNLTNDVVKIKNAVPESENLSNYEVY
FT                 SLDDVKNVDSKRNLEIARLVGKGVPEYVKSDLVDLCMKFSDVFALSDDKMS
FT                 INNFYTQKLRIKDDNPIYVKNYRLPHSQKEEINAQVEKLLKDDLIEPSCSD
FT                 FNSPLILVPKPAIEGKKRWRMCVDYRLVNKKLIADKFPLPRIDEILDSLGR
FT                 AKFFSVLDLFSGFHQIPLEEGSRDITSFSTDKGHYRWKVLPFGLNVSPNSF
FT                 SRMMSLAFSGATQIQYFLYLDDLIVIGNSVKHHLKNLESVFKICRDKNLKL
FT                 NPLKCKFFRPEVVYLGHRCTANGILPDSEKLRCVLDYPIPKDKDAVKRFVA
FT                 FANYYRRFLKNFAALCRPLNKLTRKTALFAWSDECQESFDKIKKMLVNPPV
FT                 LAYPDFSKPFIITTDASQFACGAVLSQIFDGVEKPIAFASKPFTRGEINKI
FT                 TKEQELIAIHWAIKHFRPYVYDTFFTVKSDHKSLIYLFSLKDPSSRLTRIR
FT                 LDLEECNFVIEHIKGKENVVADALSRIHIDELKSIKILTRKILAVTTRSMS
FT                 NRIKENKEKETNDDKMHEKTKIAEPKTFDILKGSGDGRLPLMITEFEKDRA
FT                 TIKVHFDKDNENKQVNKRKRAQSKIEIDVSLTGNEKFFLETIFSKLERKAI
FT                 ELNINKMMIKDKDILFNLYTAQEFKNVANKILKKLFILIIPSPKEIKDKAE
FT                 QMSLVEKFHDDLTMGGHPGQKRLLAKLRQYYLWKGMSRDVARYVKQCEKCL
FT                 LNKIKVGNKEPVVLTETPLKPFDKLVIDTIGPLNLSESGNRYALTIICDLT
FT                 KYVIAVPIPNKEAVTLARAFVNNCILIFGIPLEILSDLGKEYKNEIFKHVT
FT                 ELLKLKQSFSTPHRHQTVGSIERNHRSFNEYLRTCLPNGGQDWDDLLRYFL
FT                 FAYNTTPNTSFEFKYSPYELVFGKIPPTIDCVRSDTIDPLYNHDDYVKEIK
FT                 FKLQLAHSHARELLKKAKLRYKAIYDRKSVPIKLNIGDLVVVTNDARKQKH
FT                 ENTYLGPFVVVEIKETNVVLKDRITNKMKEIHKNRIRKVPYEYQILK"
XX
SQ   Sequence 6348 BP; 2358 A; 922 C; 1200 G; 1868 T; 0 other;
     tggcgaccgt agcgaaataa tcaaatcagc agaaaattaa aagtggaaaa aaaaaatact        60
     aaatactgta atgtgttgaa acgttctaaa taaaattagt tgaattgaaa ttaaaattat       120
     aatagttgga ggagcaaatt caaaataaaa agaaaacaaa catttaatat taagcatgta       180
     aaataaaaat gggttcatca aagtcaaaag aaacaaaagt agagggtaac tctaacgcga       240
     acgatattac aatagtggaa aatttagaag aacatagtgg tgtgatcaaa atattgctaa       300
     gtgtgatagt gattattctc ctattcaatt tgggacacaa gttgtatgta atgaaaaaaa       360
     ggagcattca aaaagaaaca ttgagacggt caaagcataa tttggaggac atttgaataa       420
     aagtcaaaaa aaaaaaaaaa aaattttaaa attgagtaca gaacgagaaa atcaaaatca       480
     aaatttggaa atctggaata gaaaacatgg caaagcaata acagattcaa gcagataata       540
     cataaatggt gcaacaaaaa acgaaacgat tgaaacctca caggctggac agtcattttg       600
     gacatacgtg gtaaaattga aaacaccgtg agtaaataaa acattcttta agtaatggaa       660
     aattttgaaa atagatacga agaattttat gccgcgttaa ataaaataat atttgtttgt       720
     ttaataatgt tgctgatttt aatgattttg ataatttgtt taattaaaaa ttgcaagtaa       780
     ctgattttgc atttatattg aaattcgagc atccggttta attttttatt ttaaacaatt       840
     ttattttgct gattttatta attttgttga cacatttgat gaaatatttt aaacgaaaaa       900
     tgttgaaatg atttgttaaa attataatgg aatggaactg attttgcatt tatattgaaa       960
     ttcgagcatc cggtttaatt tttattttaa acaattatta ttttgctgat tttattaatt      1020
     ttgttgacac gtttgatgaa atattttaaa cgaaaaatgt tgtaatgatt tgttaaaatt      1080
     ataatggaat aatttccgaa aaaggtggaa aaaaaaaaaa aaaatttttg actaaaattg      1140
     tcttcatgtc actgcaagaa aaaaaggatc agtttgttct tgtggcaaga agaatcttaa      1200
     aaagcgagtt aagtaaaaat cctgaaacat tacgaactta tcggaccgac attattgctg      1260
     tgtataacaa ttcaattaaa tacgtagaag atcgttacga cagcgcgacg gaagagtcaa      1320
     agaaaattta tttggagttt attgaatata ttaaagtaag atttatttcg tgtttagaaa      1380
     gattgaattt gtcatatgag ttcagttcaa ataggtggga attggttaat gatagtcaag      1440
     tgaaaattcg agtgggagat aattcaagtg ataattcaga caataattct caaaactctc      1500
     gtgtaaacat ggcacaggaa gcgaaaagtc aattgttgaa tacgtattct aaattgatcc      1560
     cagaattcga tggatccata ggaaaattgc ataaattcat cagcgcgtgt gaattgctaa      1620
     aagaagatgc aggagcgaac gaagctgttg cagtgggcct tattaaaact aaactgtctg      1680
     atttggctgt tccgatgatt agcacggaag atacagttca aaaggttata gatgcgatca      1740
     ggagaagcgt aaaaggcgat tcgtctaaag tagtggacgc caagttaatg gcattgaagc      1800
     aagctaataa gacacccgga gattttgtaa aagagatcga agaagtgaca acttctttgc      1860
     gtatggcttt tttgaatgag gggatgccac ctccacttgc tgaatctcag tccgtgaccg      1920
     cagctgttag gtcattaatt atgaactctg gtaattctca agttaaaacg gttcttcaag      1980
     ccgctgattt ccaaaatatg aatgaggtga cttcaaagtt tttagctgtc acgactgaac      2040
     aggcaaccaa taaggcacat attttttata ataaaagatt caatagatat gggaatcgtg      2100
     gaaattatgg tagaggtcgc ggacattata ataattttag aggtaacgga cggggtaaac      2160
     aaggaaataa ttatggtcaa aattactctc gtggctacaa taggggaaat tatcgtggaa      2220
     aaagttacaa tagaggtaat tcaaataatc atcagaatgt caggtacatg tcggaaaact      2280
     gcccgtaccc ccagctgact ctggggggcg aatccacaca atcttcaatg taaatcctag      2340
     tttcgaggac tatgtcaatg ttttgacaaa cctttctcct gaagaagtcc aatttttgtt      2400
     agatacacaa gcagatatat ccgttgtgaa agagggtgaa ataaggaatc cgattaattt      2460
     gaataataaa gatataattt acataaaggg tatcacagat caagtgataa catccctagg      2520
     aactacactt gtagaagttc gtttaggtac cagatgggtg ttgcataagg tacacgttgt      2580
     gccgcacgat tttgaaattc cggtgtgcgg aatattggga agagacttcc tcaaacgatt      2640
     tgattgtaat attgactatg gtacaatgac tctcacagtt aatgcttttg atttctctga      2700
     aattataaat atttgtgaag gtccagacag ggatatcttt acgatcccac caaggtgcga      2760
     agtaattcga tattttaaag tttcaaagaa tatttcttcg tatgaagaca aagtaataca      2820
     tcctcatgaa attatgccag gggtactaat tgcccgttcg atatttaatc ccgaaaaacc      2880
     ttttttacgt gttatgaatt tgacaaatga tgttgttaag atcaagaatg ctgtccctga      2940
     atccgaaaat ttgtctaatt acgaggtata ttcgttagat gatgtgaaaa atgtagacag      3000
     caagaggaat ttagaaatag ctcgtttagt gggaaaagga gtgcctgaat acgtgaagtc      3060
     agatttagtg gatctatgca tgaaattttc tgatgttttt gccttgagtg atgacaaaat      3120
     gtctattaat aatttctata cacaaaagtt gcgtattaaa gatgacaatc caatctatgt      3180
     caagaattac aggctaccgc atagccaaaa agaagagata aatgcacaag tcgagaaatt      3240
     attgaaagac gatttaattg aacctagttg ttcggacttc aacagtcctt tgattttagt      3300
     gccaaaacca gcgattgaag gtaaaaagcg ttggcggatg tgtgtcgact accgccttgt      3360
     aaataaaaaa ttgatagcgg acaagttccc gctccccaga attgacgaga ttctcgatag      3420
     cttaggtcga gcgaagtttt tttcggttct cgatttattt tcgggattcc accagatccc      3480
     attagaagaa gggtcacgtg acattacttc atttagcaca gacaagggac attacagatg      3540
     gaaagtccta ccgtttggat tgaacgtcag ccctaattca ttctccagaa tgatgtcgtt      3600
     ggctttctca ggagccactc agatccaata ttttttatat ttagatgatt tgatcgtgat      3660
     aggtaattca gtgaagcatc atcttaaaaa cctagaaagc gtttttaaaa tttgtagaga      3720
     caaaaattta aaattgaacc ctctgaaatg caagtttttt agacccgaag ttgtctattt      3780
     gggtcacagg tgtacggcca atgggattct gcccgattct gaaaagttga gatgtgtttt      3840
     agattatcca attccgaagg ataaagacgc tgtgaaacgt tttgtggcat ttgccaatta      3900
     ctatagacga tttctgaaaa attttgctgc actctgcaga cctttgaata aacttactag      3960
     aaagacagcg ttatttgctt ggtcggatga atgccaagaa tctttcgata aaattaaaaa      4020
     gatgctagtg aatccaccag ttttagccta tcctgatttc agtaaaccgt tcataataac      4080
     caccgacgcg tctcagtttg catgtggggc agtgctaagt cagattttcg atggtgttga      4140
     aaaacccatc gcttttgcgt ccaaaccatt tacgaggggc gaaataaata aaataaccaa      4200
     ggaacaagaa cttatcgcaa ttcactgggc tataaaacat tttcggccct atgtttatga      4260
     cacgtttttt acggtcaagt cagatcacaa gtcgttgatt tacttgttta gtttaaaaga      4320
     tccgtcgtca cggttgacgc gaattcggct tgatttagaa gaatgtaatt ttgtgataga      4380
     acatattaaa ggaaaggaaa atgtcgtagc cgatgccctc tctcgaatcc acattgacga      4440
     attaaaatcg ataaaaatat tgacgcggaa aattttagcc gttacaactc ggtctatgtc      4500
     taatagaatt aaggaaaata aagaaaaaga aactaacgac gataaaatgc atgaaaaaac      4560
     caaaattgct gaaccaaaga cttttgacat attgaaagga tcaggagatg gaaggttgcc      4620
     gctaatgatt actgaatttg aaaaagatag ggctacaata aaagtgcact ttgacaaaga      4680
     taatgaaaat aaacaggtaa ataaaagaaa aagggctcaa tccaaaatag agatagacgt      4740
     atctctgacg ggaaatgaga aattttttct cgaaactatt ttttcaaaac tcgaaaggaa      4800
     agccattgaa ttgaatataa ataaaatgat gataaaagac aaggatatcc tatttaacct      4860
     gtatacagcc caagagttta aaaacgttgc aaataaaatt cttaaaaaac tctttatttt      4920
     aataattcca tctccaaaag aaataaaaga taaagcggaa caaatgtcgt tggttgagaa      4980
     atttcatgat gatttgacta tgggaggaca cccaggtcaa aaacgtttat tagctaagtt      5040
     gagacaatat tatttatgga agggaatgtc acgcgatgta gctcgatatg taaaacagtg      5100
     tgaaaaatgt ttattgaaca aaatcaaagt cggaaataaa gagcctgtag tacttacaga      5160
     aactccattg aagccatttg ataagctggt tatagacaca attggtccat taaatctctc      5220
     cgaatccgga aaccgttacg ctctcactat tatttgtgac cttacgaagt atgtaatagc      5280
     agtaccaata ccaaacaagg aagccgttac tctcgctaga gcatttgtga acaattgtat      5340
     tctgattttt ggtattcctc tggaaatttt gagtgatttg ggaaaagagt acaaaaatga      5400
     gattttcaag catgtgaccg aattgttgaa attgaaacaa tcattttcca caccacacag      5460
     acatcagaca gtcggatcta ttgaaaggaa tcatcgttcc tttaatgagt atttgcgaac      5520
     ttgtttgcca aatggaggtc aagattggga tgatcttctt cgatattttc tattcgcata      5580
     caatacgact cctaatacat cttttgagtt taaatactca ccatatgaac tcgttttcgg      5640
     caaaatacct cctacaatag attgtgtcag aagtgacacc attgacccct tatacaacca      5700
     tgatgattac gtgaaagaaa tcaagttcaa acttcaattg gctcattccc atgcacggga      5760
     attgttgaaa aaagcaaaac ttaggtataa agcaatctat gatagaaaat cagtaccgat      5820
     aaaattgaat atcggcgatc tagttgttgt cactaatgac gccagaaaac aaaagcacga      5880
     aaatacttat ctcggtccat tcgtggtggt agaaattaaa gaaaccaacg tagttcttaa      5940
     ggatagaatt actaataaaa tgaaagaaat ccataaaaat agaataagaa aagttccata      6000
     tgaatatcaa attttaaaat aattttatga tttattaatt aatacttcaa gaaaataaaa      6060
     taccatgctc aaatacaatt tgaatataat ttctacattt ttacttattt agtttaagaa      6120
     aatatgaaaa ataaataaat ctctaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      6180
     aataagaagt aaggtgtgaa tcatgcataa atgtttagtt taagaaaata taaaacctaa      6240
     aaataattcc ggaaaataat tgagagacat aaaaatttaa gagtttgaaa tacgaaataa      6300
     tacgtgacaa aattctgtta tattttgtca ctttctgaag gaaggaag                   6348
//
ID   Gypsy-7_BrCo-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-151
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1395-1395 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 151 BP; 59 A; 25 C; 23 G; 44 T; 0 other;
     tgtagtgcga atattatgat gcactgcaat tacgagccca acatgcataa tgaaatgtaa        60
     atgcatgctt ggcgacaaaa tacattatta aataaattca ttattgtatc aaccgtcaat       120
     caaagtggtt taacattaaa aacgcatatc a                                      151
//
ID   Gypsy-7_BTa-I repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5986
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 586-586 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
SQ   Sequence 5986 BP; 2066 A; 1423 C; 1083 G; 1414 T; 0 other;
     attggcgacg aggtgaaaga aaaattcaaa aactatcgtg cgcgtgcata atttcaaaaa        60
     ttcaaaaaaa aaaaagttaa tctttacgca aaagttttct ttttttacgc gactacatta       120
     cgcgttcagc acattcggtc gagactcctt cacattgaag tacatccagc gaacagtaca       180
     cgttcaacac attcaacatg caagcatcag aacttacaac gattctgaaa acgcttcaga       240
     aaacccagga cgaaaacatt gcaaaggcac aggaaactca gcagcaattc aacgagagac       300
     taattgcagc actccgggaa caaacagaag cagcctcaag ccgaaaccaa ctagcaggtt       360
     tgcccaaatc agcattatac aagcactttg atgaattcga tgaaaagaaa gagaaattta       420
     cattctacat taaacgcttc gaaaattacc tttctattaa aggcctagat cccaagaaag       480
     aaacggacga caaagcatgc cgccaacttc tcctaaactc aattggagca tcacattatg       540
     ccttagtggt ccctttatgc acgccgaaag ccccggaaga gacgccctat aaaatattgg       600
     tcgagaaatt acaaaagcac ctatgtccaa aagtcaaacc agtcgttgct catcatagat       660
     tcttcggaat aatacaagaa tcgagtacaa ttaccgaatt tgtcgcaaaa ctgaaacgca       720
     gttcaattga ctgtgaattc caatgcaatt gtaaagcgga cattagcgac attttcttcc       780
     gcattcaatt cattagaggg ctgaaagaca cgggaatccg tgaaaaactt ctcgagtcag       840
     aagaacttga attcgacaaa ttactcgaaa aagcaatcgc actggaggcg tcacacacag       900
     actccgctga attgtgcctt acggccaaga cttcacctgc aagtgacatt aaaaaagtcg       960
     atgactctca aaaattcagc aacacataca gagggaaccg caaaagaaat ggctacaaaa      1020
     attataataa taataacaag cagaagagct acagaaaaag agaccttttg ataaaattgg      1080
     gcctagaagg taaatgcctg cgttgcggca atacatctca caaatcaaga gattgcagaa      1140
     gcacacccaa attaacctgt aaagcatgca acaaacgagg ccacgttgcc aaagtatgca      1200
     tcacgtcccc tttaaaggaa aaacaggact gcaattatct gtcagatact gataatgaat      1260
     catgcacaga gacagatgat gaccgcatca acgtaataga agaggcagaa gaaattttta      1320
     cgcacgaggc tgataacaac acgcgtaagt accgggtcaa cgtccttatc aacggacgca      1380
     cacaaacatt cgaagtcgac tccggcgctt cacaaacact gttgccgata acagcatata      1440
     aagagctgta tatgaattca aaacttacgc cgtcctcaaa acattttaag gcatacacag      1500
     gaacaacatt ccggtcttta ggcgaagtca ctactataat tacatacaaa ggtaaaagca      1560
     ttaccgatac attctacgta gtcacagatg aatacacacc tatcatggga cgaccatgga      1620
     ttcgaaaact cgacatcgag ttaaaagaaa tcgatacaat tgcaggcaaa cacataaatg      1680
     cctgcatttc aaaaatcgaa cacacattcg acgctgacgt agaagttaca caaattctcg      1740
     cgttatatca agaaacattt acgcctacag ttgggtgcat tcccggcgta aaaattgcac      1800
     ttcagctccg cgacgaagca cgtccggttg cactccgccc aagaagtgtt ccaagcgctc      1860
     tactctccaa ggtagatgaa gaattggcaa aactcgaaac tcaaggtata atccaaccag      1920
     ttccagtcag cgactgggct agtccactgg taattatccc caaagccgac aacacagtcc      1980
     gactatgcgt agattacaaa gttgctgtta acaagcaatt agttacggca cactaccaac      2040
     tgccaagaat tgacgaaatt ttatccaacc tggtgaaatc aaaattcttt tgtaagttag      2100
     acatttacaa ggcatactta catgtacaag tggatgaaaa gagctcggaa atacaaacga      2160
     taatcacgca taaaggagca tacaaattcc tacgtctggc atttggtatc aaaacagccc      2220
     catcagaatt ccacagggta atcgatcaat tactagctgg acttaaggga gtcacaacgt      2280
     actttgacga tataatatgc catggagcct ctgaagaaga atgcgctgct aatctacgag      2340
     gttgtctcca acgcttggca gacaacaaca tacacctcaa tcgctcaaaa tgtgaatttt      2400
     tccttaagga aatcacgtac ctgggacact taatcagcaa caatcaaatt tcaaaggata      2460
     caacaaaagt acgcgcaatt acagagacac cagcaccaca aaatgtggag tcattacgca      2520
     cattcctagg tatggtcaca ttctactcta aatttatacc ttcattttca ggtaacacaa      2580
     aaaacctgcg gaacttacta acttactcaa aaaagaaact caatttaaat ggtctccagc      2640
     atgcgaaaaa gaattcgaaa atttgaagca aactctggca agcgacattg tgctcgtgcc      2700
     attccagcct gataagagaa ttctagtaac aacggacgca agtccgagtg gtgttgccgc      2760
     agtcctcgca aatttgattg ataacgagga acggccagta caatttgctt cgcgctcact      2820
     tacgcgagcc gaagaaaatt acagccaact tgacagagaa gcacttgctg taatattcgc      2880
     agtaaaacgc ttttattact tcctatttgg ccgtcatttc acgttgatca cggacaatcg      2940
     acctatccga cacatccttg ccccagatgc gaaaattcca ctcatcacat cgaatagatt      3000
     aatgcgatat gctacttttc tgcaaaattt cgactacgaa attcaattaa agcgctccac      3060
     ggaaatcccc cacgcagatt tcctgtcacg tgcacctgtg gacgaaaaac cctcagacat      3120
     tgaaaaatgc ttcgaatcag aaagctcagg acatacattt gaaatgataa acgtgatttc      3180
     ggatgataaa ctaaactatg atacattacg aatggcaaca ctagaagaca aagaactcgc      3240
     aaaaatttta caaattcttc gcacagactc ggagctatcc agcacgccaa aattcgcaaa      3300
     attctctcta caaggagatt tattactatg gcaaaattga ctctatgttc cgacaaaact      3360
     acgaagtcag atattacaag ccctgcatct atcccacacg gggagcacaa aaatgaaaca      3420
     gctcgcaaga cggtacgtct actgggaaaa cattgaccag gaaatcgaaa aatatgtgcg      3480
     tgaatgcata gcatgcaacg aaaacaaatc aggaccgcac aaggtaccaa ctcacgcatg      3540
     ggacccccca gaaaataatt tcgaacgcat acatatcgac tacatgggcc cattagaagg      3600
     acacaacttc ttcatcctta tcgatgcaaa atcaaaatgg atcgaaatac gattcgatcg      3660
     aaaggcaccg tcatcggaaa caacaatccg ttatctacgt gacattttca aatcgcatgg      3720
     cttaccaatt tacatggtta gcgacaatgc ttcaattttc acaagccaaa cattccagga      3780
     tttctgcatc aaaaatggca taaggcagag actcattgct cctggacacg cagcaacaaa      3840
     tggcttagcc gaacgcacag ttcaatcaat taaacataag ctaaaagcaa tgaaaaacga      3900
     agccggtacg ctggaagaaa aattacaaac aatcctattg agatatcatg ctacgcccct      3960
     ggcgtcagga aaatctcctg cagaacttta cctcaacagg aaaattagaa taggcctaga      4020
     tttattgcat ccagttgtac cagacaaatt caataatcaa ctaccccgta cgcgccagct      4080
     tcaaacaaac gattatgtat acgcggcagt gtacaaagac aacaggataa catggaaaca      4140
     tggcatcatc attcggaaat tgggtcatct acattattgg gtaaaactga cccataacaa      4200
     ctacgaattt aaacgccaca tagatcagct aaaattggga tcacccccca gggctgacca      4260
     tgaacctcaa agcaggccgc cacggaaaca aggcgtcctt gatgactcac tgctcccgct      4320
     tctggaacca tatgtcgcca cccaggaaga agaagcgatt ccacgaagat caacgcggca      4380
     ccggaaagcg ccagagcgtt atcaaccata actcaccaga ttactcacgc cttatccgaa      4440
     ttaatacagg aaattagttg cgagatttgc tagaattacg catcatagat aatcatttcg      4500
     aaaaacaaaa taaaatatta cgcaattaga tcggcacgag aaatgagtac tttccttgtg      4560
     attcacaccc agtcctcgtt tagttcgccc cgcgtcgtca cccttcgctc taaagtgcta      4620
     cacatttaca gtatcatgag tcatatcaca atttccgcct catccctaga cgaactatta      4680
     gaacgtgaaa tggaagaaat ggaaacgcaa tgtgatcgtg ccgagtcagt caaaaatgtc      4740
     aaagaagtga aaaataacaa tcgcgaaccg gaacggaatc cgtacgtttt tcgatcatcg      4800
     cccaggagta cggatactct taacaacgtt cgacgctgcc tactaattca acactgtgtc      4860
     cactttgagg agacaatgga acagctgatt ggcttaactg caggtgcgga cggagctatc      4920
     gagtgtttac acaaccaatt gctcgctacc gctacaatgc tcagactcgt gtgtgcaaat      4980
     atacaaaatg aaaataagtt tattttcgaa aaacgctcac ccccctacag atactagtag      5040
     aacatttcca aatttagaaa aaggaatttt cctaaaattt taatttaaat cctcagttgt      5100
     taaattacgt catttctttg tgtgggctat caaacaatga ctcacgtcgc gtaatctcgc      5160
     tgtgattcat caatactgat atcaattgtc ccttgttcaa tcatcgggat cgatcagagt      5220
     ctggccgatc cagtctaaac tcaaccgtca gtgctcacac ttctcaaaca gacattccag      5280
     tgatcttacg aaatcattcc ccagtgctag cgacacactt taattttcaa aacggctttc      5340
     ttcccgggac tcttcgtcta ctacaaattg cggacgtcac ctccaccacg gatcatagac      5400
     ctgaatcata ttgaagaaat catcgagtca gcagtagaac cttcctcttc tccttccgct      5460
     tttgacatgg gattcatcgg cgatcacgaa aaggtagaga taataaacgc aggagatgca      5520
     agaggccttg gcgttcctca ccacgaccac atacagtatg gacttctact cttcgtgttt      5580
     atccttatcc tcggatactt cctctacagg tactgccgta ataatacgag aagaaaaaag      5640
     aacctgtcca ccgcccttac tcaggtccta cagcaaaaag ccaagccgtt caccatcgac      5700
     gaaaacactt tcaagtaaag ttactccaat ttttttttaa atcccactgt attgttcttt      5760
     ggttgcattt agaacgtaaa aaaaaaaaaa aaaaaaaaaa aaaaaatttt cctcttatat      5820
     tctacactcg tagcaaccac aatgtattag ctttaatatt ttaagaggac tatcagggac      5880
     cctttcatac agtaacgacc gtaagtcgca agctcgtaag gctttagttt ttttttctcg      5940
     aaacattgtt ccccgccccg atttccttca tttacgaagg ggagac                     5986
//
ID   Gypsy-7_BTa-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-276
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 612-612 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 276 BP; 60 A; 80 C; 50 G; 86 T; 0 other;
     tgttatatcc gtatttcata gcctatttgt gactcacact cagtgactca acctcttgac        60
     tcatagtagt tacgacactt agtatctatg actcattcac cttgatgatg ggagctcgct       120
     ttgctccagt gcgcatccag tcctcgcccc gaccccagaa ccgccggtag tcctcagctt       180
     cactctgtaa catatcgaat atatcattgg tcccgtattt ccagtgtctt gtgtttcatt       240
     cctatcgata tcggtcacgc cgatgacgtc acgaca                                 276
//
ID   Gypsy-7_CFl-I repbase;    DNA;    INV; 7283 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-7283
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1020-1020 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2956..4686
FT                 /product="Gypsy-7_CFl-I_2p"
FT                 /translation="MLQDEIIRTSTSQWNAPLLVVPKKADASGKPKLRVVI
FT                 DFRKLNELTIGDSFPLPNITDILDQLGNAKYFSTLDLASGYHQIPMAEKDK
FT                 NKTAFSTPYGHYEFNRMPFGLKNAPATFQRLMNSVLMGIQGLRCLVYLDDI
FT                 VIYGSSLXEHNKRLKEVMQRLRKTHLKLQPDKCEFLRKEVIYLGHIISENG
FT                 ISPDPSKLTAIKEFPTPKKVKDIQSFIGLAGYYRKFIENFSKIAKPLTKLT
FT                 KKSEKFIWTMEQQAAFETLKEKLMTAPVLKYPDFTEEFIVTTDASDYAIGA
FT                 VLSQGEVGNDRPIAYASRILTKAEQNYNTTEKELLAIVWAVKHFRPYVYGT
FT                 KFKIITDHKPLIWLFNVNDPGSRLIRWRLKLEEYEYEIIHKAGRANANADA
FT                 LSRNAIPGTSIEKDEEILKIEEEEEADTDNIKTYTEEEKKQILSEYHDAPI
FT                 GGHQGIERTIKRIRLQHNWRGLTKDVEQYIAKCESCQKNKLSRKNKVPLII
FT                 TDTPNKPFEKCALDIVGPLTITTNGNKYLLTFQDNLTKFSKAIPIPNQEAN
FT                 TVSKEFVTKIILEHGIPDKILTGSRNEFYE"
FT   CDS           join(876..1763,1640..2680)
FT                 /product="Gypsy-7_CFl-I_1p"
FT                 /translation="MQTEMQYMREQMRNIQTAQANLNETRVNANTVPLDVT
FT                 YGRTQRDIRNRRSAAPHYVSLKEARTMIPEFDGTTRHKLQEFLNACTYAVQ
FT                 NINPADEESLIQAILYTKLRGKAMQDFETRDIQTFEELKTQLETCYQAKQS
FT                 TTHLQIEFNSLKQKSSETAHAFGQRVDMLAMKLYESMVEGEERPPSFKQAI
FT                 QETIKKQALINFQIGLRDELKILVRSQRYTSLQEAINGASAEEKLIGPSVT
FT                 RASGFSYKNKFDAKQRDQLEIPTYNVINAENLDTTDAIVEAVINIHYQNRK
FT                 NPRETTRPTRDTNIQCYKCGKSGHYGRDCRSSNKYTLPKPEKSTRINTLNK
FT                 FCKYCKKTGHTREECWSLNGHPKINSTNNHNSKPVNKIKHXGSVREQKTPH
FT                 RQREKSTDSSSNSEEEEQEEARKKQPRPALEYRVTHVKNMHAPQKDELLQL
FT                 TLPIREVKGGKINMLYDSGSTISLIKLKNLKDDALIYEEKIALTGISGHKI
FT                 YTLGKMYATIKINNHKIKHAFYIIRDDVAIEHEGILGLDFLXKQTAACDYQ
FT                 KXQITIKDSTLKLHPCSKIILKPRSETIVRAAVNHNRIGIVRAEEATPGVY
FT                 IGSCLVXTKNFSCPVSMVNTTDKEVEMPTPIVTLEDMEENTKQIK"
FT   CDS           join(5342..6169,6114..7154)
FT                 /product="Gypsy-7_CFl-I_3p"
FT                 /translation="YLIYHYRLTLRTXPVFTEQDETSLPFEVAEFDXTPGI
FT                 YYEKIGRLHQTXRTWKLVIKLDVTELNDRTWQVNXYIEQTSEMCTEQTEKS
FT                 TQRTCDNLKKIINNDSNTLAKIIKLINTLYKTRTNKRRGLIDGIGSITKTL
FT                 FGIMDANDRKLIDEQIQLLQNNQQALEHAAKNQIKVLNTTIVHLNKLENIL
FT                 DYNGKLMNHYIREYTTREEIDEHFTIIIAMIXDLVRDAKDILEYLTHVXKG
FT                 TMHPLLTPINEIIXHLKEAVLQLPQGSIFSXPXKNKKQYYSYHKVAYFPFX
FT                 IKIDEWLTIENYMKVSAYXXKTNIYTILKFPXITQPMFDVLNVIPLPTPNY
FT                 ENXFMYTEVTNKLIAVNKETRTYLILRKQDLNECTNNNNLYLCDKNQPIYH
FT                 VNENTPCEAKIYVQGQNYRDQCNIGHKKATRAIWITLRQPHSWLYSTSFEQ
FT                 QITIKCNDHPEYKKIIKNTGRITLHDNCKLTTTDMTIQTETITYNTGIETF
FT                 LPEFNITIXEINKRDNDEHKLKDIINNPLELKELNNKLEEINNDLNNNENN
FT                 FFKQKQFIYPMASSGITTIIIIILIIWIIIQHRKRKSKRPAVVTIVDEIDK
FT                 SYGMPRPILKRNKSTRFKKKGIIIS"
XX
SQ   Sequence 7283 BP; 2959 A; 1434 C; 1346 G; 1513 T; 31 other;
     tttctggtgg cagcggtggg atagccgaga taccgaggac cagtaaaact ccttaacgcc        60
     tgcaacaaaa agaaaataca aaattaataa actggagaga gcaactgcta tattaaagca       120
     gatagactca accagcacgc aacacatacg gacgacagtg ataaagaaat cacggccaag       180
     cagctgaaag ccgaaaggaa acaccagcgc tcaaggacca acgtcgatcc acggccaagg       240
     caacgcaacg cagacggaca acgcaacgca gacggacaac gcatcgccga cggacgacgc       300
     atcaacgcgg gacaacgacc caccagcagc gtcaacagtc gagcgatmcg ataagcgacc       360
     cgataagtta cgaccatgcg aatcaccgta ctactactgt aagtcgaact ttatttaaat       420
     gtcagcaccg tcaaaacaag taaaatttaa gagtccgcga tttctgagcg tgccagcgcg       480
     attggcaaat agattcggaa ttgtaactcc gatacgagta gcagaagagg ctgctcgcga       540
     tattcgtaga agcgtgcgaa aaaatttaga agaacattat tcgagttcta attcgtccga       600
     ggaacacgaa ccgagtaata acgataattc ggtacaagac ggaccaagtc gcgttacagt       660
     acgaagaaat tattcaccga tatcagttga tattagttta ttcgagccac gtgcgcaagt       720
     aaatatggaa aacgaagccg tcgatagaga aatcgagcgc atgcgagcgc aagcaggccg       780
     aactaaacgt agccgtggcc tatgaggacg caggtcagcc ggccgaagga acgagtaacg       840
     tattactcgc cgaactcgta cacagtttcc gcgaaatgca aaccgaaatg cagtacatgc       900
     gcgaacaaat gcgaaatata caaaccgcac aagcaaattt aaacgaaacg cgagtaaatg       960
     caaacactgt cccactcgac gtaacgtacg gacgcactca acgcgatatc cgaaaccgac      1020
     gtagcgcagc cccgcactat gtatcattaa aagaagcgcg aacaatgatt cccgagtttg      1080
     acggaacgac gcgacataaa ttacaggaat tcttaaacgc ctgtacgtac gcggtacaaa      1140
     atattaatcc cgcggacgaa gaatcgttaa tacaagcaat cttatatact aaattaagag      1200
     gtaaagccat gcaagatttc gaaacgcgag atatccagac atttgaagaa ttaaaaacac      1260
     aactcgaaac ttgctatcaa gcgaagcaaa gtacaacaca cttacagata gaatttaatt      1320
     ctttaaaaca aaagtcaagc gaaaccgccc atgcattcgg ccaacgtgtc gatatgttag      1380
     ccatgaaact atatgagtcc atggtggaag gagaagaacg gcctccttca tttaaacaag      1440
     caatacaaga aaccattaaa aaacaagcgc taataaattt tcaaatcgga ctacgcgatg      1500
     aattaaaaat tcttgtgcga tcacaacgat atacttcgct ccaagaagcg ataaatggcg      1560
     cgagcgcgga ggagaagctt atcggcccgt ctgtaacacg agcatccggc ttctcttata      1620
     aaaataaatt cgacgctaaa caacgcgacc aactcgagat accaacatac aatgttataa      1680
     atgcggaaaa tctggacact acggacgcga ttgtcgaagc agtaataaat atacattacc      1740
     aaaaccggaa aaatccacgc gaataaatac tctgaataaa ttttgcaaat attgtaaaaa      1800
     gacaggacac acccgtgagg aatgctggag tttgaacgga catcctaaaa taaatagcac      1860
     taataaccat aattccaagc cagttaataa aataaaacat amaggaagcg tgcgtgagca      1920
     aaagaccccg catagacaga gggaaaagag cactgactcc tcaagcaata gcgaggaaga      1980
     agagcaggag gaagcgagaa agaaacaacc gcgacctgcc ctagagtatc gcgtaacgca      2040
     tgtcaagaat atgcatgcac cgcagaagga cgaattattg caattaacct tgccaattcg      2100
     cgaagtaaaa ggcggaaaaa tcaacatgct gtatgattcc ggatcaacta tttctctgat      2160
     caaattaaaa aatttaaaag atgacgcatt gatttacgaa gaaaaaattg cacttactgg      2220
     aataagcgga cataaaatat atacattagg aaaaatgtac gctacaatta agattaataa      2280
     tcataaaatt aaacatgctt tttacataat aagagacgat gtagcgatag agcacgaagg      2340
     aatcttagga ttagatttcc ttamaaagca aacggcagca tgcgactacc agaaaaawca      2400
     aataacaata aaggatagca cattaaaatt acatccatgt agcaaaatca ttttgaaacc      2460
     acgtagcgaa acaatwgtac gagccgcagt caatcacaat cggataggga tagtccgagc      2520
     cgaagaagca acaccaggag tctatatcgg aagctgtctg gtggamacaa aaaatttttc      2580
     atgtcctgtg agcatggtaa acacaacaga taaagaggtc gaaatgccca ctccaatagt      2640
     cacactagaa gacatggagg aaaatacaaa gcaaataaaa tagaaacaag aaggaagact      2700
     aaaaatacca ttcctcgtaa acaacaaatt tgacaactac tgcgaactca acacttaaat      2760
     aaagaagaag aacgaacact cttaaaaatc tgcgaagaat acagtgatat attccatctg      2820
     gaaggagaac cactgacatg caccgcgacg gtcgagcatg agataagcac gcgtgccgac      2880
     accgcgccgg tgaatgtgaa accataccga ttacccgaga agcataaggc ggaagtaaat      2940
     cggcaagtac aagaaatgct gcaagatgaa attatcagga caagcacgag tcaatggaac      3000
     gcaccattat tagtagtgcc aaagaaagca gatgcatcag gaaaaccgaa actccgagta      3060
     gtcatagact tccggaaatt aaatgaatta actataggcg actcattccc gttgcctaat      3120
     attactgata ttctagacca actgggaaat gcaaaatatt tcagtacatt agatctagcg      3180
     tcaggatatc accagatccc aatggctgaa aaggataaaa ataaaacagc tttctcaact      3240
     ccctacggac attacgaatt taatcgaatg ccgtttggat taaagaatgc accagcgact      3300
     tttcaaaggc tgatgaattc agtgttaatg ggaatacaag gacttagatg cctggtctac      3360
     cttgatgaca tcgtcatata cggatcaagt ttasaagagc acaacaagcg attaaaagaa      3420
     gttatgcaaa gactgcgaaa aactcactta aaattacagc cagacaaatg cgaattttta      3480
     cgcaaggagg taatatatct gggtcatatt atttccgaaa acggaatatc tccagaccca      3540
     tcgaagttaa cggcaataaa ggaatttccg acgccgaaaa aagtcaagga tatccaatcc      3600
     ttcataggat tagctggata ttacagaaaa ttcatcgaga atttttcaaa gatcgcaaaa      3660
     ccgctaacaa aattaaccaa aaaatcggaa aaatttatat ggacaatgga acagcaagca      3720
     gcatttgaaa cattaaaaga gaaactaatg actgcaccag tgctgaaata tcctgatttt      3780
     acagaagaat ttatcgtgac cactgatgcc tccgactatg cgatcggagc agtgctatca      3840
     caaggagagg taggcaacga ccgaccgatt gcttacgcca gcagaatatt gacaaaggcg      3900
     gagcaaaact ataatacaac ggaaaaagaa ttattagcca tcgtatgggc cgtaaaacat      3960
     tttagaccat acgtatatgg aacaaaattc aagattatca cggaccacaa accgctaata      4020
     tggttattta atgtaaacga ccccggatcg agattaatcc gatggagatt aaaattggaa      4080
     gaatacgaat atgaaatmat tcataaggcc ggacgagcga acgcgaacgc cgacgcgcta      4140
     agtcgcaacg cgatacccgg aacgtcaata gaaaaggatg aagaaattct gaagatagaa      4200
     gaagaagaag aagcagacac tgataatata aaaacataca cagaagaaga gaaaaaacaa      4260
     atattatcag aatatcatga tgcacctata ggagggcatc agggaattga acgaacaatt      4320
     aaaagaatcc gattacaaca caattggaga ggactaacta aagacgtaga acaatacatc      4380
     gcgaaatgtg aatcgtgtca aaaaaataaa ttatcaagaa aaaacaaagt ccctttaata      4440
     attaccgaca cgcctaataa accatttgaa aaatgcgcat tagatatagt cggaccgcta      4500
     acaattacga ctaacggaaa taaatattta ttaacctttc aagataatct aacaaaattc      4560
     agcaaagcga taccgatacc aaatcaagaa gcaaataccg ttagtaaaga atttgtcaca      4620
     aaaataatac ttgaacatgg aattccggac aaaattctaa caggatcaag gaacgaattt      4680
     tatgagtgaa atatttaaaa acacttgtaa attgttaaaa ataaataaaa ttcaaacaac      4740
     cgcctatcat ccagaaagca acggcgcact ggaacgatcg cacagaacat tagccgaata      4800
     cctacgacac tatgtaaatg aagatcagac gaactgggat gaatggatac cgttcgcaat      4860
     gtttacatat aatagacgcc gcatactgct acaggattta caccctttga attagttacg      4920
     ggcaccaagc cgaaattccg acagcattaa cgaaaccacc gaaaccaaca tataattacg      4980
     acgactacgt gcaagaatta aaagaaagac tgagagcgag taatcaactt gcgaaagaac      5040
     atctcaaaaa ggaaaaagaa aaagctaaaa agaactacga caaaaataca aaggaagctc      5100
     aatttaaaat aggagataaa gtgctaatgc acgacgaaac gttacgacgg ggacgatcga      5160
     aaaaactcga atcattatgg acaggaccat acacgattat aaaaaagaat tcaaacgtaa      5220
     actatacaat acaaaaagga agaaaagcaa tgcgcatgca tataaataaa ttaaaactat      5280
     tcatagaaaa ttaaaataaa aaactcactg agaaaaaaaa cgcacacaag gcataacata      5340
     atacctaata tatcattaca gactaacact aaggaccwac cccgtcttca cagagcaaga      5400
     cgaaacgtct cttccgttcg aagtggcgga atttgatmat acwccaggaa twtattacga      5460
     aaaaattgga cgcctacatc aaaccmacag gacgtggaaa ctmgtwatca aattagatgt      5520
     aacagaacta aacgatagaa cttggcaggt aaacmaatat atcgaacaaa caagcgaaat      5580
     gtgcaccgag caaaccgaaa aaagcaccca acgaacttgc gacaatctaa aaaaaataat      5640
     taacaatgac tctaacacct tagccaaaat aataaaatta ataaacacct tatataagac      5700
     tcgaacaaac aaacgtagag gcctcatcga tggaataggt tcaataacga aaaccttatt      5760
     cggaatcatg gatgcgaacg acaggaaatt aatagacgaa cagatacagt tattacagaa      5820
     caaccagcaa gcattggaac acgccgcgaa aaatcaaatc aaagtcttga acaccaccat      5880
     agttcattta aacaaattag aaaacatatt ggattacaac ggtaaattaa tgaaccacta      5940
     cattcgggaa tacactacac gcgaagaaat mgacgaacac ttcaccataa tcatagcaat      6000
     gataamagat ttagttaggg atgcgaaaga catactagaa tatctkacgc atgtwcakaa      6060
     aggcacaatg catcccttgt taackccgat aaacgaaatt atwttwcatt taaaagaagc      6120
     agtactacag ttaccacaag gtagcatatt ttccwttcca mataaaaatt gacgaatggc      6180
     taacgatcga gaattacatg aaagtaagcg cgtacwgcga kaaaacaaat atatacacga      6240
     tcttaaaatt tccawtaatt acgcaaccaa tgtttgacgt cttaaatgta attccgttac      6300
     cgacacctaa ctacgaaaat agwtttatgt atacagaagt aactaataag ttaatagctg      6360
     taaataaaga aacgcgtacc tatttaattc taagaaaaca agatttaaac gaatgtacaa      6420
     ataataataa tttatatcta tgcgacaaaa atcaaccgat ctaccatgtc aacgaaaata      6480
     caccgtgcga agcgaaaatt tatgtacaag gacaaaacta tcgcgatcaa tgtaacatag      6540
     gccataagaa agcgacccgc gcaatatgga tcacattacg acagccgcac tcctggctat      6600
     attcgacatc attcgagcag cagatcacga taaaatgtaa tgatcatcct gaatataaaa      6660
     agataatcaa aaacacaggt cggattacac tacacgacaa ctgtaaactg acaactacag      6720
     acatgacgat acagacagaa acaattacat acaatacagg tatagaaaca tttttaccag      6780
     agttcaatat aacaatcwca gaaattaata aaagagataa tgacgaacac aaacttaaag      6840
     acataataaa taatccacta gaattaaaag aattaaataa taaattagaa gaaataaata      6900
     acgatttgaa taataacgaa aataatttct ttaaacaaaa gcaattcatt tatccaatgg      6960
     cttccagtgg aataaccact ataatcatta taatattaat aatatggata attatccaac      7020
     ataggaaaag gaaatctaaa cgaccggctg ttgttacaat agtagatgaa attgacaaat      7080
     catatggaat gcctagacca atattaaaaa gaaataaaag cacacggttt aaaaaaaagg      7140
     gtataataat aagctagatg taagaaacga ttataatcaa cattgtaaaa cgggaaaaag      7200
     acattgtatt atattcaaaa tcgcaaaaaa ttatagaaaa acttcgtttc aacctccgtt      7260
     tttcttttcc aacgggggag gga                                              7283
//
ID   Gypsy-7_CFl-LTR repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-572
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1021-1021 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 572 BP; 195 A; 145 C; 119 G; 113 T; 0 other;
     tgttatagtc cgaaagacta taacttatta tttcattgat aatattaata gaatattcgc        60
     gaaccgcgca aaaccgctac ctcagcgaac cacgcgtaag aacgttcgcc ggaaacgcga       120
     aaacgctaac gaagggattc gactttgaac ctccttcgct tgcacttgga ctttggacgc       180
     cacgaaaaac ctccatgacc atacatggtc atgtcgctag gcgatcccct ccaaaacacc       240
     cccaaaaccg agggaataaa agccgtccac cgcgaatccg cggcggacag tcgttaatca       300
     caaaacaatc gttaatagtg cgaaaccgag ggctaaccgc tatactgcgc gacgaatcac       360
     ccgacgaaat tgctaaacac tctaaatcta agaacgaagc gattcaggaa aggacgacga       420
     agagaaggct cgaaagaaac tgattaatat caaataagcg aatatatttg tagagaagag       480
     ttatataata aaactgttgc aaaacgacat cttggaagaa ttggttgaag attcccggct       540
     accccacacc ccgtgccgcg ccgggcacaa ca                                     572
//
ID   Gypsy-7_CoFl-I repbase;    DNA;    INV; 14601 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-14601
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2275-2275 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           864..3020
FT                 /product="Gypsy-7_CoFl-I_1p"
FT                 /note="zinc finger."
FT                 /translation="MIHLGGITHESGSENEGLDNTIIDTCRQDPSNKKQKK
FT                 NMAEQMLELELEPEGCEKLDALDEGTKAIVMGLFSKISAKLKKTEEVGVPF
FT                 TATAGPIRNLSPTNRDFDYIQRDVGVSIGPANKEVSLISGERAIGGNIRRA
FT                 EETRGARTDRVDTLPIQWGMPGKPEWPISGASQYESDESRKIGASDLHNQQ
FT                 LWDRIKDTSEELEKMMKAACMATAPPPTNYHTDRVDFNANKDRRRGDIIPT
FT                 MTPYIEKEQETRNYDHLRRPQYAQHNILSMLSNMTNNIPFFDGDPINLPLF
FT                 ERMVRMVARTIGPENELFFLGTLANRLKGKAAEHFAPRLTQFTTVEEFIKE
FT                 LSNRYCSINNADSLMAKLKIITQQDSEAIDDYGGRVQQLYNRLTMLYDSNP
FT                 YFPPIQKQAMKANLESEAVKQFIYGLLPTFSWRMARFNPETLGEAIIQALK
FT                 IESDLSLRHAIPVSALPTCNRTTTEWGPLVNLARKEEKTAENTKGVQGTAA
FT                 VQEKRCIYCDGRTGHSVEECRKLLAVISDRKTSKENGRELRGNCNYCQKPG
FT                 HYARDCRSRKQDREEEERQRNERRNQPADNTPTDSNAYNYRGRNDNYNNNN
FT                 YYNNYDRGYNNGPTEPYNSNNNHNYRYNDYNSRGYNYYDNRGNGDAYNNYS
FT                 RGTFNRYGNGYRNQDSRDGYNRDLVRHGPPQERGPQQRESGAYTPDNRRDP
FT                 PVALNSQDVRRGPQTSSIN"
FT   CDS           2951..5797
FT                 /product="Gypsy-7_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="QERPSRSFKLARCSAWSPNVEHQLEKEIEKSVSGEEE
FT                 CVRERPQKAEKEIVEKKTHNDSPSTYTVQEKIESNTAEQDDTPIQRSGKRT
FT                 RKGRRARKKSNRTKAPDTHVDNDEPKLSERDEEIEQLPKITIKLARTGHMP
FT                 PSVQLQGPQLKNGKATFYADTGAEISIVKVNFLSTDMLIDSRYRVAIIGVT
FT                 HGARKTLGTVQAQLHGLECTLHVVPHDFPIDAEGIIGWDIFKRYRGQISAA
FT                 ENTIKLDSVEIPLVRPECFKIPARSRQIIYARIRKSKNNSENGWIPLQEME
FT                 EGILFGNFIARNVNGKIVAECINTSNEIKYVPVPEVELLEYEEIYRKRAED
FT                 VEGDDVESLGEAMIRLFNKEKRDDKKKIEIFTKNEGELEKQKRVDKIMQLV
FT                 DTAGCNKEEKEHVRKLIESNPYVFGLDGEPLKATHLLKHRIITTSDKPIVA
FT                 KRFRYPPAIRDQMKIEIKKMLEQGIIEPSTSPYSSNTWIVAKQPGPNNEKR
FT                 VRVVTDFRLLNEVTVGSCYPLPFQSDILENLASARYITVVDLKSGFFQVEI
FT                 HEDDAHKTAFSGPDGHYQYKRMPMGCKDSPNTFLRAIALALAGLQGHEIEV
FT                 YLDDIMVFAPDLEEHGRRFTKLLKRLAAANLTIEPKKCQFLKREAKVLGHI
FT                 VGNGQIMTDPKKLEAARNYPRPTNAKKIKQFLGFVGYYRRFIKNYARIAQP
FT                 LSRLLKADTAFKWGEEEEQAFNTLVDTLCSGPVLIAPDLEKPFIVTTDASD
FT                 YAIGAILSQGEIGKDRPCEYASRCLKGSELRYPTYDKELLAIVFAKEQFRP
FT                 YLYGRKFTVVTDHEPLKHFHSSKKPDIRFNRLKAELRGYEFEVIYRPGINN
FT                 RPPDALSRNPILQEGEENPERPRQELYQLADEQEKEGLADSDGPPARIFKT
FT                 RATRNKRIQGNTKKGKLPMRIQKIQMKKYRKRNKISVDGMEICAI"
FT   CDS           11932..13593
FT                 /product="Gypsy-7_CoFl-I_4p"
FT                 /note="Baculovirus F protein."
FT                 /translation="MRHISRATYEVLQTKEKAQEAYRAVVGQEILSQTAAV
FT                 QVIKGQLTVAEKEKILELIASKPSTTIDINKYLAEQITVTTFGNHEKELQN
FT                 IKKFEEKAGKITEEGLEIFADLITGEDKVSNMVKEFQQIANELSEKFRKTA
FT                 DIIYLASRGVIHLPEEASIAISEAKILAGQLRPDLKLPGENNATTGEDIGE
FT                 ALEIATVAFNGKIVYYIEIPLVTREDFDLLRISPLPVEQEGFNTTNIVAYL
FT                 QPTHEYVAVSISAKRFAPISQRTVEKCKKIGRTRICTLMEPAHEIEEDHPC
FT                 EIKLILGYTIKNPEECPIILARLNGTYWTRLHARNQHAFSTTVEEKIHVQC
FT                 EHTEHETLKVTDAGVINLSDDCTAQASETRLSPGSEEGKSQIVKFKNSNLN
FT                 VKKIIQSIKGIRTDKLQELISTIIKRDGLQELGSQEHGPEENLKTGTKLMD
FT                 IVQRVRKLLQTQSELSDWKEYAWVAAEITIGMAAGSFGFLKWGGXLILNLA
FT                 RMFAGRQRRDNAEREGTAATSPSAPQPTSLEMQKRTPRHLANIPVTITGAS
FT                 STGLGPT"
FT   CDS           5680..9267
FT                 /product="Gypsy-7_CoFl-I_3p"
FT                 /note="integrase."
FT                 /translation="AHSREHKKRKITYADSEDSDEKVQKKKQNFGGWDGNM
FT                 RNIRTDGQADGDGDSESEGKVGISEKLSKMRKTVKKRGRPRKNIIFSDLKT
FT                 ETDTEATDEIISQGPINDKLAYMRREDRMQQGIKSTSTPAIEKNEIGPKER
FT                 KTRKRQLDTLTRKQAPFSITEHNESPSGDIIIANCGTPIITNDDSENHSPK
FT                 LDDWGRQLIQASLAAEAAEKKRGKEEASDIRKLTETDETAEKTEITEKGVF
FT                 ESREVEVMERADQARSEPKEKESEEELARDEHTMNRPLTDGTNIYNNTERV
FT                 NGAIRHDAHLYDLIDGLGDGFRAKVLIDVKKQAVEGKQGLRIDLWKDENDR
FT                 VEKLESSMDSKNQKGNENTKIRDDSPPTNELRENYATSVEMSEGEDRETRE
FT                 CGDSCAEPNKRLTLVDVPRDGSCLFHCLILLYGLEMSQDRLRKTLLSSEWI
FT                 NKCKDPEGTKNILKESHAFGDGECAFVFSQIHKVNICIHFQLSRERTIFQH
FT                 FIGKKGETFKHIRLKNDHYQALIEYDGGSHLTTDHEENSEKGSAGGKDLND
FT                 ARVSTSEQGNSEEGHETGDSDVRRMSNGESSNDESGKGERQTSSENFAQKE
FT                 GESATEKVHEDRDTPPPDPPPPPDSDSTSTIASENEEESRGLNQALVEESE
FT                 SDPKEGSDLKNLSALDKYRVCRTRLPRDKPPWVPGDGSNPPPFQKVKKVED
FT                 HPFRYLDNLAFCTVVENVPDTETIDALYERGYIDPIMMNHEVRAVGNAMLS
FT                 RKRKVSVMRMYVKKHFDDRALRTDIKICLKSLQGLVKSNSLKNIGIIRDLA
FT                 ILDINQWMYLIEQLEEIFKEMNIIITLYTNTLVVPPVDQRFKVIKEYHEST
FT                 VGGHRGINKTYNRIAKDFYWRNMRPEVRQFVAGCESCQTKKLVRVKTKQAM
FT                 LITDTPSRPFEKISIDFYGPINKPSDHGNTHILSIQDWLTKYIVLAPVQRA
FT                 TAQETVKALLNYFMAYFGAPEKLLSDRGTHFMNRTMEEFARLFKIDKIGST
FT                 AFHPQSNGAIERMHHVLCEYLKAYVDKNEKWDELIPLCMLAYNTSEHESTG
FT                 YTPYELLFGQRARIPSSFKRVETDQTYSKYFEQITDTLTQMRTIAALKQVQ
FT                 SKYRSKYYYDRKLNTKFFMEGEMAYILKEPSKGKYDCQYEGPYEITGINYK
FT                 SHDVKLQRNDEVRVVHVDKIKKACVLKIQHEDNKERV"
XX
SQ   Sequence 14601 BP; 5428 A; 2919 C; 3399 G; 2851 T; 4 other;
     gttttggtgc taagtgtggg gtacggtaag agtcggaatt tttttttctc gcttatttta        60
     ctcgtttcaa aaaaaaattc cgccgagaag cacacatagt gcagtgccac gaaaatcgaa       120
     cttgagtgcc ggaacggacc caaacaggac agaggtaaac gggtagctgt tcatacgagc       180
     gattctcgac atcaacgatc gggaagtcta caaacagaag gtcaaagcaa cttcgggaaa       240
     gaccagcaag aaggtagcag tttattgcag tcacatccgt attcctgacg ctcaacgcca       300
     aaaaggggag tagtaaccag ggaaggatga tattcagcac aatcattctg gcaatgggag       360
     tactgttgac ttggtaagtg agttgtttaa atttttatat cgttttttta ttttccctga       420
     ccccgggaca aaatatataa aactttgcgt aacaaacata aaacaaaggg atcttattag       480
     tgggctcgca cakatatagg aaatattcga aaataattat ataataataa taacccgcac       540
     ctatatagat cactattttc aatactataa tttttattaa caaaaacaga ctacagatat       600
     tcccagaaga atatttcgtc ctatttatca ctaaacaaag agagagcaca aaattaaaag       660
     aaaccgagta aaagacacac gccgctcctt tgctttcttg tctcgcctct tactattctt       720
     ttcgcgcgat tattattaag ccactctata cgtaattaaa cgtcgccccg taattaggaa       780
     aatacataag ctttgcaata atcaaaaaga aaatacgttt cgcgacacgt acatacaaaa       840
     aggagggaaa aagtaggaaa aaaatgattc atcttggcgg cattacccat gagtcaggaa       900
     gcgagaacga aggcctagat aacacgataa tcgacacgtg caggcaagac cctagtaata       960
     aaaagcaaaa gaaaaatatg gcggaacaga tgttagaatt agaactcgaa ccagaagggt      1020
     gcgagaaact agacgccctc gatgaaggaa cgaaggcaat agtaatgggc ctgttttcaa      1080
     aaattagtgc aaagctaaag aagacagagg aagtgggcgt gccattcaca gcgaccgcag      1140
     ggcccatccg aaatttgtca ccgacaaata gggacttcga ctacatacaa cgcgacgtag      1200
     gagtaagcat aggacccgca aataaagaag tgagtcttat ctccggcgaa cgggccattg      1260
     ggggcaatat aagaagggcc gaagaaacac gcggagctcg aacggataga gtagacaccc      1320
     taccgataca atggggcatg ccggggaaac cagaatggcc gatttccggt gcatcacagt      1380
     acgaaagcga tgagtcaaga aaaatcgggg caagcgactt acacaaccaa cagctatggg      1440
     atagaataaa ggatacgagc gaagaactcg aaaaaatgat gaaagccgcg tgtatggcaa      1500
     cggcaccacc accaactaat tatcatacag atcgggtcga ttttaacgcg aataaggata      1560
     gacgacgggg tgacataata ccgaccatga ccccatacat agaaaaggaa caagagacac      1620
     gcaattacga ccacctacgc agaccgcagt atgcgcaaca caacattctg tccatgctca      1680
     gcaatatgac aaacaacatc ccgtttttcg atggtgaccc gatcaaccta ccgctgttcg      1740
     aaagaatggt gcgtatggtt gcacgtacaa taggcccgga aaacgaacta ttttttttgg      1800
     gcaccctcgc aaataggcta aaagggaaag cagcggaaca ttttgccccg agactgacgc      1860
     agtttactac agtcgaagag ttcatcaaag agctctcaaa cagatactgc agtattaata      1920
     atgcagactc gctcatggca aaattgaaaa taataacgca gcaagatagt gaagcaatag      1980
     atgactacgg gggacgagta caacaattat acaatagatt aacaatgttg tacgattcaa      2040
     acccatactt tcccccaatt caaaaacagg caatgaaggc aaacctagaa tccgaggcgg      2100
     taaaacagtt tatttacgga ttacttccaa cttttagttg gagaatggca aggtttaacc      2160
     cggaaactct aggggaagca ataatacagg cgttgaaaat tgaaagtgac cttagtttac      2220
     ggcatgcaat accggtaagc gcactgccca catgcaatag gacaacaaca gagtggggac      2280
     cactcgtaaa cctagcaaga aaagaagaaa aaacagcaga aaacactaag ggagtacaag      2340
     gaacagcagc agtacaagaa aaacgctgta tatactgcga cggccgaacc gggcattcag      2400
     ttgaggaatg ccgaaagcta ctagcggtga taagtgatag aaaaacttcg aaagaaaacg      2460
     gaagggaact gaggggaaat tgtaattatt gtcaaaaacc gggacactat gcgagagact      2520
     gccgctcgcg caagcaagac agggaggaag aggagagaca gcgtaacgag aggcgtaacc      2580
     aacccgcaga taatactcct actgacagta atgcctataa ctacaggggt aggaatgata      2640
     actataacaa caataattat tataataatt acgacagggg ttataacaat ggcccaacgg      2700
     agccatacaa tagtaacaac aatcacaatt acaggtataa tgattacaac tccagaggtt      2760
     ataattatta cgacaaccgt ggcaacggtg acgcgtacaa taattatagc aggggcacat      2820
     tcaaccgcta tggtaacggc tacagaaatc aggatagcag ggatggctat aatagggatc      2880
     tagttaggca cgggccgcca caggagaggg gcccacagca gcgagaaagc ggcgcataca      2940
     ctccggataa caggagagac cctcccgtag ctttaaactc gcaagatgtt cggcgtggtc      3000
     cccaaacgtc gagcatcaac tagagaaaga gatagagaaa agtgtgtccg gtgaggaaga      3060
     atgtgtgaga gagaggccgc aaaaggcgga gaaagagata gtagagaaga agacgcacaa      3120
     cgacagtccg agtacttaca cagtgcaaga aaaaatagaa agtaatacgg cagagcagga      3180
     tgacactccg atacaacgga gcggtaaacg cacaagaaaa ggcaggagag cccgcaagaa      3240
     gagtaatcgg acaaaggcgc cggacacaca tgtagataat gatgaaccca agctttcaga      3300
     gcgcgacgaa gaaatagagc agcttcccaa gataactata aaactcgcga gaacagggca      3360
     tatgccacca tcggtccagt tacagggacc acagttaaag aatggaaagg cgacttttta      3420
     tgcggataca ggcgcagaga tttcgattgt aaaggttaat tttctaagca cagacatgct      3480
     aatagacagt aggtatcgag tagctattat cggcgtgact cacggagcac gcaaaacgtt      3540
     gggcacagta caggctcagt tgcacggatt agagtgcaca ttacatgtag tcccccatga      3600
     cttcccaatt gacgcggaag gaatcatagg gtgggatatt tttaagcgat accggggcca      3660
     gataagcgcc gccgagaata cgattaaatt ggatagcgta gagataccac tggtaaggcc      3720
     ggagtgtttt aaaatacctg cgagatcgag gcaaataatt tatgcgcgaa taagaaaaag      3780
     caaaaataat tcagaaaatg gctggatacc cctccaagaa atggaggaag gaatactgtt      3840
     cgggaacttt atagccagga atgttaatgg taaaatagtc gcagagtgca ttaatacaag      3900
     taacgaaata aaatatgtgc ctgttccgga agtagagctg ctagaatatg aggaaattta      3960
     ccggaagcgc gcagaagacg tcgaagggga cgacgtcgaa agcttggggg aagcaatgat      4020
     aagattattt aataaagaaa aaagagatga caagaaaaaa attgaaattt ttacaaaaaa      4080
     cgaaggggag ctagagaaac aaaaacgggt agacaaaata atgcaactcg tagacacagc      4140
     tggttgcaac aaggaagaaa aagaacatgt gagaaaacta atcgagtcaa acccttacgt      4200
     atttggcctc gacggggaac ccctcaaggc aacacacctg ctgaagcatc ggattattac      4260
     gacgtcggat aaacccatcg tggcgaaaag attcagatac cctccggcaa taagggatca      4320
     aatgaaaatt gaaataaaaa aaatgctgga gcaagggata attgaaccct ccacctcccc      4380
     ctatagctca aacacctgga tagtggctaa gcaaccgggg ccaaacaatg aaaaaagggt      4440
     aagggtagtc acagatttcc gactacttaa cgaggttaca gtgggctcat gttacccgct      4500
     accgtttcag agcgacatct tggagaacct agcctcagca cggtacatca cggtagtgga      4560
     cctcaaatca ggattctttc aggtagaaat acacgaagac gacgcacaca agacggcatt      4620
     ttcaggccca gacgggcatt accaatacaa gagaatgcca atggggtgca aggactcgcc      4680
     aaacactttt ctgagggcga ttgcactagc actcgcaggg ttacaaggcc atgaaataga      4740
     agtgtatctt gacgatataa tggtctttgc ccccgatcta gaagaacacg gaagacggtt      4800
     tacgaaattg ctaaaacggc tcgcagccgc aaacctcacg atcgagccca agaaatgtca      4860
     attcttgaaa agagaggcga aagtgctcgg tcatattgta ggcaatgggc agataatgac      4920
     tgacccaaag aaactcgaag cggccagaaa ttaccctcga ccgacaaacg caaagaaaat      4980
     aaaacaattt ttaggattcg taggctacta caggcggttc attaaaaact atgcacgaat      5040
     cgcccaacct ctttcaagac ttttaaaagc ggacaccgca tttaaatggg gagaggagga      5100
     ggaacaggcg ttcaataccc tcgtggatac actgtgcagt ggacctgtac tcatcgcccc      5160
     ggatttagaa aaacccttta tcgtcacaac ggacgcatca gattacgcaa tcggagcgat      5220
     ccttagtcag ggagaaatcg gaaaagatag accgtgcgag tacgcgtccc gctgcctcaa      5280
     agggagcgaa ctccgctacc cgacatacga taaggaatta ttggcgatcg tatttgcaaa      5340
     agagcaattt agaccatatc tatatggacg caagtttacg gtggtcacag accacgagcc      5400
     gcttaaacac tttcactcgt ctaagaaacc agacattcgt ttcaacaggc tcaaagcgga      5460
     actgagagga tatgagtttg aagttatata ccgtccgggc ataaacaaca gaccacccga      5520
     cgcattatcg cgtaacccaa tactacagga gggagaagag aatcctgaac ggccacgcca      5580
     agagctatat caactggcag acgaacaaga gaaagaagga ctggccgata gcgatggacc      5640
     tccggcgcgc atctttaaga cacgggcgac ccgtaataag cgcattcaag ggaacacaaa      5700
     aaaaggaaaa ttacctatgc ggattcagaa gattcagatg aaaaagtaca gaaaaagaaa      5760
     caaaatttcg gtggatggga tggaaatatg cgcaatataa gaacagacgg ccaagccgac      5820
     ggcgacggag actccgaatc cgagggaaaa gtgggaataa gcgaaaaatt aagcaagatg      5880
     aggaaaaccg tgaaaaaacg aggtcgccca aggaagaaca ttatatttag cgatttaaaa      5940
     acggaaacag acacggaagc aacagacgaa attatttcgc aagggccgat aaacgacaaa      6000
     ttagcctata tgcgaaggga ggaccgaatg caacaaggaa taaaatcgac gagcacacca      6060
     gcaatcgaga aaaacgaaat tggaccaaaa gaacggaaaa ctcgtaagcg tcaattagac      6120
     acacttacga ggaagcaagc accattctct atcacagaac acaacgaaag tccgtcagga      6180
     gatattataa ttgcaaactg cgggacacca ataataacaa atgatgattc agaaaaccat      6240
     agtccaaaac ttgatgattg gggtcggcag ctgatacaag caagcctagc agccgaagcg      6300
     gcggagaaaa agagaggcaa agaagaagca agcgatatcc gaaagctgac ggaaacagac      6360
     gaaacagcag aaaagaccga gatcacggag aaaggcgttt tcgaaagcag ggaggtcgaa      6420
     gtgatggaga gagccgacca agcacgaagc gaaccaaagg aaaaagagag cgaagaggag      6480
     ctagcacggg acgagcatac gatgaatagg ccgctcaccg acggcaccaa catatataat      6540
     aatactgaac gtgtaaacgg cgcgatccga catgacgcac acctttacga cctaatagac      6600
     ggccttggtg acggatttcg ggcaaaagtc ctaattgacg ttaaaaaaca agcggttgaa      6660
     ggtaaacaag gattaagaat agacctatgg aaagatgaaa atgacagagt agaaaaatta      6720
     gaaagttcaa tggacagcaa aaaccaaaaa ggaaatgaga acacgaaaat tagggacgat      6780
     tcgccaccaa caaatgagtt aagggaaaat tatgcaacat cggtcgaaat gagcgaagga      6840
     gaagataggg agactcgtga atgtggagat tcttgcgcag agccgaataa gaggctcacg      6900
     ttagtcgatg taccccggga cggaagctgt ctctttcatt gcctcatact tttatatgga      6960
     ttggaaatgt cacaggacag actgagaaaa acgctcctta gctcggaatg gataaataaa      7020
     tgtaaagacc cagagggcac aaaaaatatc ttaaaggaga gccacgcgtt tggggacggg      7080
     gaatgcgcct ttgtattttc tcaaatacat aaagtaaaca tatgcatcca ctttcaatta      7140
     tcaagagaaa gaacaatctt tcaacatttt atagggaaaa aaggggaaac atttaaacac      7200
     atacgcctca aaaatgatca ttatcaggct ttgatagaat acgatggagg cagccatctg      7260
     acaacagacc acgaagaaaa tagtgaaaag ggctcagctg gcgggaaaga tttgaacgat      7320
     gctagagtca gcactagtga gcagggcaat agcgaagaag gacacgaaac aggagatagt      7380
     gatgtaagac gtatgagcaa cggggagagc tccaatgatg agtcaggaaa aggagagaga      7440
     cagacgagca gtgaaaattt cgcacaaaaa gagggagaga gcgcaacaga gaaggtgcac      7500
     gaggacaggg atacaccacc acccgaccct ccaccaccac ctgattccga tagcacatcg      7560
     acaatagcct cggaaaacga agaagagagc aggggactca accaagctct agtcgaggaa      7620
     agcgaaagcg atcctaagga ggggagtgat ctcaagaact taagcgcgct agataaatat      7680
     agggtatgca gaacccgact accgcgtgat aagccaccat gggtcccagg cgatggatca      7740
     aacccccctc catttcaaaa agtaaagaaa gtagaagatc accccttcag atacctagac      7800
     aatctagcct tctgtacagt ggtggaaaac gtcccggata cagagacaat tgacgcgctc      7860
     tacgagcggg gatacattga tccaataatg atgaatcacg aagtgagggc ggtcggaaat      7920
     gccatgcttt ctagaaaaag gaaagtatcg gtcatgcgca tgtacgtgaa aaaacacttc      7980
     gatgacaggg cgttaaggac agacatcaag atatgcttaa aatcactcca gggattagtg      8040
     aaaagcaata gtttaaaaaa cattggaata ataagggacc tcgcgattct agacataaac      8100
     caatggatgt atttgatcga gcagctagag gaaattttca aggaaatgaa tattataatt      8160
     actctgtaca caaacacgct tgttgtgcca ccggtagatc aacgattcaa agttattaaa      8220
     gagtaccatg agtcaacggt gggaggacat agagggatca acaaaactta taatagaata      8280
     gcaaaggatt tttactggag aaacatgaga cccgaagtta ggcaatttgt ggcgggatgc      8340
     gaatcgtgcc aaacgaaaaa actggtaaga gtaaaaacca aacaggcgat gcttattact      8400
     gacacaccga gcagaccatt tgagaaaatt tcaatagatt tttatggacc aataaataag      8460
     ccttcagacc atggtaatac gcatatattg tcaatccagg actggctgac aaaatacata      8520
     gtattagcgc cggtacagcg agcaacggcg caagagacgg taaaagctct cttaaactac      8580
     tttatggcat attttggagc cccagaaaaa ttattatcag acagggggac acactttatg      8640
     aacagaacaa tggaagagtt cgcaagattg ttcaaaatcg ataaaatcgg cagcacagca      8700
     ttccacccac agagtaatgg agcaatagaa aggatgcacc atgtgctatg cgagtatctc      8760
     aaggcgtacg tcgacaaaaa cgaaaaatgg gatgaattaa tacctttatg catgctcgca      8820
     tataatacat ccgagcatga gagcacgggg tacactccgt acgagttact cttcggacag      8880
     agagcacgta tcccctcgag ctttaaacgg gtagaaacag atcaaacgta tagcaaatac      8940
     tttgagcaaa tcacagatac cctcacacaa atgcgaacaa tagcagcgct gaaacaggta      9000
     caaagcaagt atagatccaa atattactac gacaggaaac ttaacaccaa attttttatg      9060
     gaaggagaaa tggcgtacat attaaaagag ccgtcgaaag ggaaatatga ttgccagtac      9120
     gaaggcccat acgaaataac agggattaat tataagagtc atgatgtaaa gttgcagagg      9180
     aatgacgaag taagagtggt gcatgtcgac aaaatcaaga aagcatgcgt cttaaaaatt      9240
     caacacgagg ataataagga gagagtctga atcagagaga tatggtgcga gaaaagaagg      9300
     aagtaaagaa aaccaagcgg gctcaacagt aagcgtgact cacgcagtcg ccgaagccca      9360
     tacgcatgtt taacacaggg atatagcttc agggtcggga ctcaagcgat gcaggctcac      9420
     gtgggtacct acaggcaaat acacaatttt agggttgggg catcagcatg tataaaatag      9480
     ttagtggaaa ccaacagtca aaataattaa ggttcgccaa aattttcgcg gcccccggac      9540
     gggccacaaa ttattttttt tccttttctt cctcttccct tttttttctc tttctcttta      9600
     atacacgaaa caagaaatta aaatttttcg ttaccgagtt taacgcttac tgattataca      9660
     aaactctaac gacaacggga gagttacgcg tgtggttttc tctcaaaacg cgttatatat      9720
     atatatatgt gtgtgtgtgt gtgtgtattt acatatatat atggatgcgt gtgtacgcga      9780
     tgcaaaaaaa aaaaaaccca caagtgcgga atatgaaagg gaaataataa aaggatgaaa      9840
     acactgtatt tgaaaaatta tatttttttt tatttttcct catttaaact aatgggagcc      9900
     acagccctta caacaaccac acgagtggct caccccctcc ttttttcgcc gtcgcccacg      9960
     acccaaacca ctccttcgag aagtcccgtt agaaccctcc cccagctgca gcgtttgcaa     10020
     ccgctgaagg cagtcgacga cgctgggctg agaaccagtg gtagcagcga tcagcgtgga     10080
     agggacgagg catccgctgg cagaacgttg cacctaatag caaaaaaaga aggaaaagac     10140
     gaattaaata aagaaataaa taaacaaatt gaaataagta acaaaaatca aaaaaaaaga     10200
     aagtacctgg ataaccggtc gggatcgaga ggatagttgg cggcgccttc cagggtgacg     10260
     tccaccacta gcaccaggat ggtaccgtga cagctacagc cgacggccag agagtaggaa     10320
     gcccccccta ccaaggtggg gcagtgcagc cacaacactt tcccagtaaa ataggggacg     10380
     ggcgccttct cctcctcccg cacaatcacg aggaacggaa ccccgaaggg catcgcacct     10440
     cgcaggaccc tacccctcct cgataggggt agcgcaaggt tggcagtggc aacgcgccgg     10500
     aaggccaccc cggtaacagt agaggaaccg ggacaccgaa gaaggcgtag ggatcgacta     10560
     tcagtcgcac cccaagctga aaaaaaaaaa aagaaaaaaa aagaggatta caagaataaa     10620
     gaaaaaaaga aaagatgacg aaagccaaga gcacttaccg aaccatgctg cccacaatat     10680
     attggcgcta gcgcggtcgg cccgttgagc acaacaatgc tttgcccagg gggccgtcct     10740
     acagcgggga catcccggca cgcatacagt cgcgtaaaca aaaaaaaaaa gaaaaaaaaa     10800
     gaaaaaaaac tccgctttca tacttacgct ttggcaacct ggcacggcgc acgcggcttc     10860
     ctcctggaga acagccccca acagtaaccc acacgcacca ccaccggtga caacgaagcg     10920
     cgtggatcgc gagtcaccta aaggcaaccg gacaaaccca ataaggcgat caaaaaattg     10980
     actgaaaccg gccatgactg tcgaagttaa ttgcagagat cgtgcacgta aggagacgta     11040
     gaatacactg acttagcagc aacgttgaga aaaagcaaac gcagattcgt acacctatgt     11100
     aagtcctttc ccactttagg tgagtcactt gaaggaaatg gaaataagga aaaataagaa     11160
     taacgtagca tacagcgtcg ggaaacggag gtttataata tagaacaata aaattttccc     11220
     cctttttctt ctccctctca tatccacact cgcctccgct gggaatgaac cgaatgagtg     11280
     aatgcgtgta acgtagccta gtatgtacga acttgtaata cacttagagg aaagggcata     11340
     agaaatgaag tgacgaaaga cacgaaaatt gaacggcatt agataaagct cagcaaggga     11400
     aagtcgcacc cgaacatatg catgagcaaa cgtaatagca tgtatatata cgtaccaata     11460
     tataaattaa gttatcactt aagagcgcat agggaaatcc acatgtaaag ggaaaaccac     11520
     actcgcagct taaagcaatt acgcgaacgc gaattattaa atagtcctaa tcactgaata     11580
     tagggacaaa tcacccgggt gtataagcat gtatccacat gtgaaagaaa atgtatataa     11640
     agagaaggaa cgcaagaatc atatagaaaa gtatccattt ttttgttgtt gttttgtttt     11700
     agggcagagg ccgcacaggg aaataaacaa ctaggggagg tagaattaat caagaaaaat     11760
     ccggggataa ttgtagaaaa cctgggccca atccaatcag ccacatcaac gtggaaagtc     11820
     atatggtacg tagattggag ccagctaatt gtagaatcgg aacaattttt acgggcgcag     11880
     acgcaagcaa gctggaagtg cacggtaaca ttaagaaaga aaagagaatg catgagacat     11940
     ataagtcggg ccacgtacga ggttctacaa acgaaagaaa aagcgcaaga ggcatacaga     12000
     gcggtagtgg gccaagaaat tcttagtcaa accgcagctg tgcaagtaat taaggggcaa     12060
     ttaacagtag cggaaaaaga aaaaatacta gaattgatag cctcaaaacc aagtaccaca     12120
     atcgacataa ataaatattt agcggaacaa ataacagtca caacgttcgg taatcatgaa     12180
     aaagagctac aaaatattaa aaaatttgaa gaaaaagcgg gaaaaataac ggaagaaggt     12240
     ttagaaatat ttgcagacct gataacagga gaagacaaag tatcaaatat ggtaaaggaa     12300
     tttcaacaaa tagccaacga actctcagaa aaatttagga aaacggccga tataatatat     12360
     ttggcaagtc ggggcgtgat acacctaccg gaggaagcat cgatagctat atcggaggct     12420
     aaaatattag caggacagct aagaccggac ctcaaactcc caggagagaa taatgcwaca     12480
     acaggggaag atatcggaga agcgttggag atagcaaccg tagcatttaa tgggaaaata     12540
     gtatattaca tagagatacc cttggtaaca agagaggatt ttgatcttct cagaatatca     12600
     ccgctaccag tagaacagga agggttcaat acaacaaaca tcgtggcata tctacaacca     12660
     acacacgagt acgtggcagt cagcataagc gcgaaaaggt tcgcaccaat atcacagcga     12720
     acggtwgaaa aatgcaagaa aataggacga acacgcattt gtacactgat ggaaccggca     12780
     catgagatag aagaagacca tccttgcgaa ataaaattga ttttgggtta cacaataaaa     12840
     aatccagagg aatgcccaat tatactagcc agattaaatg gcacttattg gacacgccta     12900
     catgcaagaa accagcacgc gttcagtacc acagtggagg agaaaataca cgtacaatgc     12960
     gagcatacag agcacgaaac attgaaagtt acagatgcag gggtaataaa tttatcagat     13020
     gattgcacgg ctcaagcatc agaaacaaga ttgagcccag gatcagagga gggcaagagc     13080
     caaatagtta aattcaaaaa ctcaaactta aatgtaaaga aaataataca gagtataaaa     13140
     ggaataagaa cagacaagtt acaggaacta ataagcacaa taataaaaag ggacgggtta     13200
     caggaactcg gtagtcaaga gcacgggcct gaggagaact taaaaactgg cacaaaatta     13260
     atggacatag tccaacgcgt gcgcaaactc ttgcagacac aaagcgaatt atccgattgg     13320
     aaggaatacg cgtgggtggc agcagagata actataggca tggcggcagg gtcgttcggg     13380
     ttcctaaaat gggggggccm cttgatatta aatctggcta gaatgttcgc aggtagacaa     13440
     cgcagagaca acgcagaaag ggaagggact gcagcgacga gtccctcagc gcctcagccg     13500
     acatccctcg aaatgcagaa gaggacaccg agacacctag ctaacatccc ggtaaccatc     13560
     acgggagcat cctccacggg tcttgggccc acataaaaca tacgacgtaa caagtgattc     13620
     ctactaccag aaaaaaaaag agaaaaaata aaattaagga atacggaata acaagtaaaa     13680
     tataaggaaa aagcattgta ataataataa taacaataat aattaaaatt aggtaataat     13740
     aatactgtat aattatatag acactaaggt aatagtaata ttataagaat aataacaacg     13800
     aataccattt taatgtgaaa aaaagaatga gcgccgggag tcgctcgact atatcggagg     13860
     gcgcagtccg taggacgaga ctaagaaaga attttctttt ctctaaaata tgtagtaaca     13920
     agaaagatat attaagttta attatgtaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaatt     13980
     gtcgttgatc ataatctaca gtaattgtaa taataataat catgataaca tgataaaata     14040
     aaataacaat catgataata agagaacgag aatgagcgcc ggaagtcgct cggctatatc     14100
     ggagggcgca gtccgtagga caaggataaa gaattttttt tacaaaatga caagtagttt     14160
     gtaaaatagg taaaaaaaaa aaaaaaaaaa aaaaaaagaa aagaaaaatc tccaatgata     14220
     gatacttaag tgaacacgaa catgtaaagt ataaatatat tgattaagta cgaaaaacat     14280
     cattaaatgt aaactagtag taatcagatg actaattcac taaatttttt taaacaaaaa     14340
     tgtaacagaa ggcagagcgc atacataaac agaattgtca tacacaatta tactcgagta     14400
     cagaatggga aggacgattg aatgtgaaaa tgtacagaga acggcggttt tctaaaagaa     14460
     tgaaaggatg agtgaaccac cgtatgtgag aaaaacaaca caaacaacat aacacacgca     14520
     tcacacacac aatcataggt acaacggcca ccagacacaa ttcagcgtcg tcgaggacga     14580
     acgacgtcgc ggcctcggac g                                               14601
//
ID   Gypsy-7_CoFl-LTR repbase;    DNA;    INV; 281 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-281
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2301-2301 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 281 BP; 88 A; 73 C; 58 G; 62 T; 0 other;
     tgttacgtac gatatgctgg gcatatcata ctgactcacc ctagtaacta caagcctacg        60
     ctagtaaagg acaccaatag gggaaacgag cttatataag gccctgcgag acacgaatcg       120
     gggcactcga gcgtctttta ggcaagagac cgaacgataa gtagaaaaca ccgcgcgaaa       180
     cacacacgcc tctgccttca agaagctaat aaataattga ccaacgagtt gagttctttt       240
     cgtgacgcac ctccttacca gcttctttat cctacgtaac a                           281
//
ID   Gypsy-7_CQ-I repbase;    DNA;    INV; 4631 BP.
XX
AC   AAWU01000353;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_CQ_;
KW   Gypsy-7_CQ-LTR; Gypsy-7_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4631
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 393-393 (2011).
XX
DR   GenBank; AAWU01000353; Positions   15443   20073.
XX
CC   Positions [3513-3863] - Integrase core
CC   'ACCCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           258..4595
FT                 /product="Gypsy-7_CQ-I_1p"
FT                 /translation="MDADQFKQFLDQQKSIMERLLAKLSTESTGATGSAAN
FT                 RGQACNVPVPQPSPLSLVGDMAENFDFFERSWNNYVKASGLDKWPATEAPR
FT                 KVNILLTVIGEQARRKFHNFELTEAQQGDPKAALEAIKALVVAKRNIIVDR
FT                 FDFFSAAQSASESIDDFCARLKALAKLAKLGTLEPELLAFKVVTSNKWSHL
FT                 RTKMLTISDITLEKAIDLCRAEEIAAKRSQELGGFLPTPEVNKISRGRGDH
FT                 KQKTLRCKFCGGSHEFTKGACPALGKRCHRCKGKNHFETVCKASSKGRKSK
FT                 RVKEVKDDYYSESDTASGGSESSEESGEECEIGKIYDNSQNGGCVLAELDL
FT                 KFNNSWETVLCELDTGANTSLIGLDCLKKLTGTDNPELLASKFRLQSFGGN
FT                 PITVLGQVKVPCRRPNRKFSLVLQVVDVDHRPLLSARASRELGLVKFCNTV
FT                 TFEEPVQPTPPSPHSEKLFNIYRVKAQEIVSSHESLFTGYGKFSGTASLEI
FT                 DDSVTPTIQPPRRVPIAIRAKLKEELEKLESDGIIVKETKHTEWVSNVVIV
FT                 QRGSGFRICLDPVPLNKALKRPNLQFVTLDEVLPELGKAKVFSTVDAKKGF
FT                 WHVVLDEPSSKLTTFWTPFGRYRWIRLPFGVAPAPEIFQIKLQEVIQGLKG
FT                 VECIADDLLVFGVGDTLEEALADHNRRLEKLLCRLELHNVKLNKAKLKLCE
FT                 RSVKFYGHVLTDEGLKPDESKVAAIRDYPQPKNRKEVHRFVGMVTYLGRFI
FT                 NNLSANLTHLRMLIPESATWKWTSVEESEFNKVKSLVCDIKTLRYYDVNQP
FT                 ITIECDASSIGLGVVVYQRDEVVGYASRTLTATEKNYAQIEKELLAILFAC
FT                 TRFDQLIVGNPKATVRTDHKPLVNIFKKPLLSAPRRLQHMLLNLQRYKLST
FT                 EFVTGKDNVVADALSRAPAGGAEGDDFYKKQDIFKIFEEIQEVKLSSFLGV
FT                 SSAKLNDLMRETEKDTPLQHVIGYVRGGWPASADQVPDAVKIFFGYRHELS
FT                 TQDGLVFRSDRIVVPYILRRKMIESCHASHNGIEATLRLARANLFWPGMTS
FT                 EIKNAVKGCSVCAKFAASQQNPPMKSHEIPVHPFQLVSMDVFFAEQSGVKH
FT                 KFLITVDHYSDFFEVNLLKDLSPESVINACKQNFARFGVPQRVVTDNGTNF
FT                 ANRKMVQFANNWDFELVTSAPHHQQSNGKAEAAVKIAKQLMKKAAESESDF
FT                 WFSLLHWRNIPNNVGSSPASRLLSRSTRCGVPTAATHLVPRVEEDVPAKIE
FT                 ANRKRSKLCYDRKARNLPELEVGSPVYVQLNPETSKLWTQGTITNRLNERS
FT                 YQVNVGGADYRRSLVHLKPRKEPATLPDRQSSSCVMNYREEETTDENDHQQ
FT                 LNTREERREATVDETVCQQAVQPCVLQPETSTLAEMSTPRELAVTPLPIRQ
FT                 ERQERNRTITPQKVERPKRVTKIPEKFKDYKL"
XX
SQ   Sequence 4631 BP; 1241 A; 1199 C; 1251 G; 940 T; 0 other;
     tggtgtcaga agctgacgca agcttctagg tcttttcggg cgtcatttag tgaaatcgcg        60
     gaaaacgacc aggttttttt tcctacgaat aaaagtgttc gtgtcgagtc gcttcggcgg       120
     ccatattaaa aaactgaact gaattgacca acgacggcgg ccattttgaa gcaaaagtcg       180
     cgtcgttggc cgttgtgaaa aagtgactgt gtgaaaaata aaaaaagtga attgaaaaaa       240
     aaagaacgct ttccagaatg gatgcggatc agtttaaaca gtttttggac caacaaaaat       300
     ccataatgga gcgtctgctg gccaaactgt cgacggagtc aacaggggcg accgggtccg       360
     cggcgaatcg tggccaagca tgcaatgttc cagtacccca gccgtcgccg ttgtctcttg       420
     tgggggacat ggccgagaac ttcgatttct tcgagcgcag ctggaataac tacgtgaagg       480
     ctagcggctt ggacaaatgg ccggcaacgg aggctccccg caaagtgaat attctgctga       540
     cggtgattgg agagcaagcc aggcggaagt tccacaactt cgagttgaca gaagcacagc       600
     aaggagaccc gaaagcagca ctcgaagcta tcaaagcgtt ggtcgtggcc aaacggaaca       660
     taattgtgga ccgttttgat ttcttctccg ccgcacagtc agctagtgag tccatcgacg       720
     acttctgtgc caggctcaag gcgctggcca agctagcgaa gctcggaacc ctggaaccgg       780
     aactgctcgc tttcaaagtc gtcacatcca acaagtggtc gcacctgcgc acaaagatgc       840
     tgacaatttc ggacataacc ctcgagaaag ccatcgatct gtgccgtgca gaggagatcg       900
     cagctaaacg atcccaagaa ctgggaggtt tcctgccaac gccagaagtc aacaagatca       960
     gccgagggag aggagaccac aagcagaaga cgttgcgctg caagttctgc ggaggctctc      1020
     acgagttcac aaagggagca tgcccggcgc ttggcaaacg ttgccaccgc tgtaaaggca      1080
     aaaatcactt cgaaacagtc tgcaaagcta gctcgaaggg tcggaagtcg aagcgggtca      1140
     aggaagtgaa agacgactac tactccgagt cggacacagc gtccggcggc agtgaatctt      1200
     ccgaagagtc cggagaggag tgcgaaattg gcaagatcta cgacaattcg caaaacggcg      1260
     gttgcgttct tgctgaactg gacttgaaat tcaacaactc gtgggaaact gtgctctgtg      1320
     aactggacac tggggcaaat accagcctga ttggcctgga ctgtctcaag aaactgactg      1380
     gaacggacaa tcccgaactg ctggcgtcga aattccgcct gcagagtttt ggtggaaacc      1440
     ccatcacagt attgggccag gtgaaggtgc cgtgtcggcg gccgaacagg aagttttcgc      1500
     tggttctcca ggtcgttgat gtcgaccacc gccccctact gtcggcaaga gcttcacgcg      1560
     aacttgggct ggtgaagttt tgcaacacag ttaccttcga ggagccagtt caaccaacac      1620
     cgccgtcgcc ccactctgag aagctgttca acatttaccg cgtgaaagct caagaaatcg      1680
     tcagcagcca cgaaagcctc ttcacgggct acggaaagtt ttccggcaca gcgtcgttgg      1740
     aaatcgacga cagcgtcaca ccgacgatcc aaccgcctcg acgagttccg atcgcgatcc      1800
     gagcaaagct gaaggaagaa ctcgaaaagc tcgaaagtga cggcatcatc gtgaaggaga      1860
     cgaaacacac cgaatgggta agcaacgtcg taatcgtcca gcgaggctct ggctttcgta      1920
     tttgtctgga tccggttccg ctgaacaaag ctctcaagcg tcccaacctc caattcgtaa      1980
     cccttgatga agtgcttccg gaactgggca aagcaaaagt tttttccacg gtcgatgcca      2040
     aaaagggctt ctggcacgtt gtgctggacg agccctccag caagctcacc accttctgga      2100
     caccgtttgg gcgttaccgt tggattcgcc ttccgttcgg tgttgcacca gcgccggaga      2160
     ttttccagat caaactccag gaagtaatcc aaggtctcaa gggagttgaa tgcatcgcgg      2220
     acgatttgct ggtgttcggc gtgggcgaca cgctggagga ggccctagct gatcacaacc      2280
     gccgccttga gaaacttctt tgtcggttgg aactccacaa cgtgaaactt aacaaagcca      2340
     agctgaagtt gtgtgaacgg tccgtcaaat tctacggtca cgtcctcacc gatgaaggtt      2400
     tgaagccgga cgagtccaag gttgctgcga tacgtgacta tccccagcca aaaaatcgca      2460
     aggaggtgca ccggtttgtt ggcatggtca cgtacttggg gcgcttcatc aacaatctca      2520
     gcgccaactt gacccaccta cgaatgctga tcccggagtc ggcaacttgg aagtggacat      2580
     ctgtggaaga gagcgagttc aacaaggtga aatcgttggt ttgcgacatc aaaacactac      2640
     gctactacga tgtcaaccag ccaatcacca ttgaatgtga cgctagcagc atcggtctcg      2700
     gtgtggtcgt gtatcagcgc gacgaagtgg ttggatacgc gtcgcgaacc ctcacggcaa      2760
     ctgaaaaaaa ctacgcgcag atcgaaaaag aactcctggc gatacttttt gcctgtacca      2820
     gattcgacca gctgatagtt ggaaatccaa aagcgaccgt caggaccgac cacaagccac      2880
     tggtgaacat cttcaagaaa ccgcttttgt cagcaccacg acggctgcaa cacatgttgc      2940
     tcaacctaca gcggtacaag ctgtcaacgg agttcgttac gggaaaggac aatgtggttg      3000
     cggatgcttt gtcacgtgca ccagccggcg gagcagaagg agacgacttc tacaagaagc      3060
     aggacatctt caagatcttc gaagaaatcc aagaggtgaa actcagcagc ttcttaggtg      3120
     tgtcgagcgc caaactgaac gatctcatgc gggagactga aaaggacacc ccactccagc      3180
     acgtcatcgg ctacgttcga ggtggatggc ctgcctctgc cgatcaagtt ccggacgccg      3240
     tcaaaatctt ctttggatat cggcatgaac tgtctaccca ggatgggctg gtcttccgca      3300
     gtgacaggat tgtggtccca tatatcctcc gccggaagat gatcgagagt tgtcacgcaa      3360
     gccacaacgg catcgaagca acactacggt tggcaagggc gaacctgttc tggccgggca      3420
     tgacgtcaga gatcaagaac gcggtgaaag ggtgctctgt ctgtgcaaag tttgccgcgt      3480
     ctcaacaaaa ccctccgatg aaaagtcacg aaattccggt acatccgttc caactcgtgt      3540
     caatggatgt cttcttcgct gagcagagcg gcgtcaagca caagttcctg atcaccgtcg      3600
     atcactactc ggactttttc gaagtgaacc tgctgaaaga tctgagtccg gaatccgtga      3660
     tcaacgcctg caaacagaac ttcgcgaggt ttggtgtgcc ccaacgtgtc gtcaccgaca      3720
     acggaaccaa ctttgccaac cgaaaaatgg tgcagttcgc caacaactgg gactttgagc      3780
     ttgtcacgtc ggcaccacac caccaacaat ccaacggcaa ggctgaggcc gcggtcaaga      3840
     ttgccaagca gctgatgaag aaggcagctg aaagtgaatc cgacttttgg ttttcgttgt      3900
     tgcattggcg aaacattccg aacaacgtcg gatccagtcc agcatcacgc ttgctgtccc      3960
     gttcaactcg ctgtggtgtg ccaactgccg caacccacct tgtgcctagg gtggaggaag      4020
     atgttcccgc taaaattgaa gccaatcgga agcgatcgaa gctgtgctac gaccgaaagg      4080
     cacgaaactt accggaactg gaagttggat ccccggtata cgtgcagctg aatccggaga      4140
     cttccaagct gtggacacag ggcaccatca cgaaccgact caacgaacgc tcataccagg      4200
     tgaacgtggg aggtgccgat taccgccgat cgctggtaca tctgaagccg cgtaaagaac      4260
     ccgctacgct gcctgaccgc cagtcgtcat cctgcgtgat gaattatcgg gaggaggaaa      4320
     caaccgacga gaacgatcac caacagctca acacccggga ggaacgcaga gaagccacgg      4380
     tggacgaaac cgtttgtcaa caagccgtgc agccgtgcgt gctgcagcct gaaacgtcaa      4440
     cgcttgcgga aatgtcaaca ccgagggagt tggctgttac accgttgccg atccgacagg      4500
     agcggcagga gaggaatcgg acgattacac cgcagaaagt cgagcgaccg aaaagggtta      4560
     ccaaaattcc agagaagttt aaagattata agttgtagtt ttggaatatt gtttttagag      4620
     aaaagagagg a                                                           4631
//
ID   Gypsy-7_CQ-LTR repbase;    DNA;    INV; 166 BP.
XX
AC   AAWU01000353;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_CQ_;
KW   Gypsy-7_CQ-I; Gypsy-7_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-166
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 394-394 (2011).
XX
DR   GenBank; AAWU01000353; Positions   15277   15442.
XX
SQ   Sequence 166 BP; 47 A; 44 C; 29 G; 46 T; 0 other;
     tgttatgata ttgccagacc cctcgtcatt acactaacac tcactcacac actcgcagca        60
     ctggacgctt gagtcagtct ctctctagtt ctcgccgtgc taagatcgtc taaataaagc       120
     tagtattaaa acgctaataa ccggtctttt gggagaactt agaaca                      166
//
ID   Gypsy-7_DAn-I repbase;    DNA;    INV; 3962 BP.
XX
AC   AAPP01018003;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DAn_;
KW   Gypsy-7_DAn-LTR; Gypsy-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3962
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018003; Positions   51329   47368.
XX
CC   Positions [3007-3558] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           814..3936
FT                 /product="Gypsy-7_DAn-I_1p"
FT                 /translation="MSPTVLVFLRTKKLKQSSDSADKFEENHNTIARLAIN
FT                 DNYSKTQFLIDTGADISVMPPCRIAKTMLTPKLLFAANGTKIQTYGEKRIT
FT                 VSLGLGRNFVWTFVLADVNCAIIGADFLQHFDLLVDMKRRKLIDRATLHES
FT                 TCHAPQRKINAILSYDTSNQYARLLHEYRDLATINSNRLPAESEVTHFIST
FT                 NGPPTHARARRLAPDKLKAAQTEFSYLIEKGICRPSKSHWSSPLHLVKKAN
FT                 GEWRPCGDYRALNNVTVPDRYPIPYILDVTSILHGKKIFSKIDLQKAYHQI
FT                 PVEPQDIPKTAIITPFGLFEFLFMTFGLRNAAQTFQRHINNVIQDLDFVFA
FT                 YIDDILIASESAEQHETHLRTILDRLRKAHLTVNFEKCQFGKSQLTFLGHD
FT                 ISQHGLKPSEAKVEAVRHFKKPLIAKDLKKFLGMINFYRPFIPRAADNQHI
FT                 LQTLIQGNKKNDKTPILWSTEADHAFDACKNELANATLLNYMAPNSQLTLT
FT                 TDASDDAMGAVLHQIVNEQTQPLGFFSKKFTPTQKKYSTYDRELTAIYQAI
FT                 LHFKFALEGRNFIIFTDHKPLMYAFNQNSEKASPRRARQLDFISQFSTDIR
FT                 HITGEENNVADLLSRIEAIKHIDFDEMALEQENDDELQSLLNSDPENTISL
FT                 TKLSLSGSNKQLYCHVANNQIRPFVPRCLRQTVVQALHSLSHPGVKATNKL
FT                 VGKHYVWPHMAKDVAKIVRSCIPCQKAKIQRHTKSPLGEYAASDARFEHIN
FT                 IDIVGPLPSSNGYRYCLTCIDRFSRWPTAIPLVDITAQSVANALISGWFAL
FT                 YGIPLHITTDLGRQFESTLFQELARICGFKHLRTTAYHPQANGMIERWHRT
FT                 LKAALKCADPINWSSSLHLILLGLRTTVKSDIGLSPAEMVYGTALRVPGGF
FT                 FTPNTQKHTESEFAEALQKTISQLPTTKPVHHHTPQEFVHPDLNHCTHVFV
FT                 RVDRVKTPLEANYEGPFEVLAKHDKYFTLKGHTKDNKVSIDRLKPAYIFQN
FT                 ESPSTQGKTTAPTAQPTDQLSRSGRRVRFPTKYLS"
XX
SQ   Sequence 3962 BP; 1195 A; 1152 C; 804 G; 811 T; 0 other;
     gtaaattggt gaccccgacg tgatcactat atagacgcga gtaccggtgc ttacaatggc        60
     aaacaacgac accacacaag acgacgccga cgtttttcac gataccgtta ctcgcggttc       120
     cgacgtagtt attaaccgcg tggcggttaa aattccgccc ttttggaccg agcacccaga       180
     attatggctg tcgcaaatcg aagcccaatt cgttctggca ggaataactg cagacgacac       240
     gaaattcaac acgatcctgg cgtcaatcga agcaccggta ctggcccgaa tcgccgacgc       300
     catcgtcaac caaccaggca caggcaagta cgaaaactta aagtcgtgta ttttggaacg       360
     cttctgcgaa agcgagcaga agaaaatcca gaagttgatt tcggagactg accttggtga       420
     caagcgcccc acacaactgc tcaacgagtt aaacgcactc gccgcaaaca aagttgacga       480
     aacattctta aaagcactgt ggctgcagcg cctaccaacc caagtgcaag cgatcttgca       540
     agcatcggac gcccgcctag cagatttagc taagttggca gacaaagtca tggaagtcgg       600
     cgattttcac catatacgca ccgttgacgc caaatcggcg ccacccagca gcaccgtttt       660
     cgacgaacgt ctagaccgca tcgagcaaca aatcaacgcg ctgttcaaaa accgttaccg       720
     caagaatagc tcacccacat taacggatcg caacagcgtc ccgacttcag gcttgtgttg       780
     gtaccacagc aaatttggca acgccgccaa gaaatgtcgc caaccgtgct cgttttcctc       840
     cgaaccaaaa aactaaaaca gtcttcggat tcggcggaca aattcgaaga aaaccacaac       900
     acaattgccc gcctcgccat caacgacaat tactccaaaa ctcaatttct catcgacacc       960
     ggcgccgaca tttcagtgat gccaccctgc agaatcgcaa aaactatgct cactccaaag      1020
     cttcttttcg ccgccaatgg tacgaagata caaacctatg gagaaaaacg cataacagtg      1080
     tcgctgggat tgggacgaaa cttcgtttgg accttcgtat tagctgacgt caactgcgct      1140
     atcattggag ctgatttcct tcaacatttc gacttactcg tcgatatgaa acgacgcaaa      1200
     ctcatcgatc gagctacgct gcacgaatca acatgtcacg cgcctcaacg taaaatcaac      1260
     gcgattttat cctacgacac gagcaaccaa tacgctaggt tgcttcacga ataccgcgat      1320
     ctcgcaacga tcaactcgaa ccggctgcca gcagagtccg aagtaacgca cttcatctcg      1380
     accaacggcc cgcctactca cgcccgcgcc cgacgactag cgcccgacaa actcaaagcc      1440
     gcacagactg agttctccta cctcatcgaa aaaggaatat gccgcccctc aaaaagccac      1500
     tggtccagtc cattacacct ggtaaagaaa gcaaacggag agtggcgacc atgcggcgac      1560
     tacagagcac taaacaacgt aacagtgccg gatcgatacc ctattccgta catactggat      1620
     gtaacaagca tcctacacgg taaaaagata ttttcaaaaa tcgacctgca aaaagcatat      1680
     caccagatcc ctgtcgaacc gcaagatatt cccaaaacag caattatcac gccttttggg      1740
     ctattcgaat tcttgttcat gacattcggc ttacgcaacg cagcgcaaac ttttcagcgt      1800
     cacataaaca acgtaataca ggatctcgac tttgttttcg catacatcga cgacattctg      1860
     atcgcttcag aatccgcgga gcagcacgag acacacctcc gtactatcct cgaccgcctt      1920
     cgaaaggcac atctcaccgt gaacttcgag aagtgccaat tcggtaaatc acaactcacg      1980
     ttcctgggac atgacatcag ccagcacggt ttgaaaccat ccgaagcaaa agtggaagcc      2040
     gttcgccact ttaaaaaacc gcttatagct aaagatttaa aaaagtttct gggtatgatc      2100
     aacttctatc ggccttttat cccacgtgct gctgataacc aacacatact ccagactcta      2160
     atccaaggca ataaaaagaa cgacaagacc ccgatactct ggtccacaga agccgaccac      2220
     gcattcgacg cctgcaagaa cgagcttgca aacgcaacgt tgctgaacta catggcacct      2280
     aactcgcaat taacactaac taccgatgcc tccgatgacg ccatgggtgc cgtgttacat      2340
     cagattgtca acgagcagac gcaaccactg ggtttcttct ccaagaaatt cacaccgacg      2400
     caaaagaagt acagcaccta cgatagagag ctgactgcca tctatcaggc cattttgcac      2460
     ttcaagttcg cattggaggg cagaaacttt ataattttta ccgaccacaa gccgctgatg      2520
     tacgctttca atcaaaacag cgagaaagca tcaccgcgac gcgcgcgcca actggatttc      2580
     atcagccaat tcagtaccga tatccggcac atcacaggag aggaaaacaa cgtggctgat      2640
     cttctctcac gcatcgaagc catcaaacac atcgacttcg acgagatggc actggaacag      2700
     gaaaacgacg acgaactaca atcgctactc aattctgatc cagaaaatac catctcacta      2760
     accaaattat ctctttcagg ctcaaacaaa caattgtact gccacgttgc caataaccag      2820
     atacgcccgt tcgtgcccag atgtctacgc caaaccgtgg ttcaagccct gcattcgctg      2880
     agccatccag gagttaaggc gacgaataaa ttggtcggca aacactatgt ttggccccac      2940
     atggcgaagg atgtggccaa aatcgtacgc tcttgcatcc cgtgtcaaaa agctaaaatc      3000
     caacgacaca caaaatcgcc actgggagag tatgccgcca gcgacgcccg tttcgagcac      3060
     atcaatatcg acatcgttgg cccactgcca tcatccaacg gataccgata ctgcctcacg      3120
     tgtatcgatc gcttctcaag atggcccaca gcaatccctt tagtcgacat cacagcacaa      3180
     tcggtggcca acgctctgat ttcgggctgg ttcgctctgt acggaatccc tctccacatc      3240
     acaacagatt taggccgaca atttgagtcc acacttttcc aagagctcgc cagaatttgc      3300
     ggttttaagc acctgcgcac gacggcgtac cacccacaag ccaacgggat gatcgaacgc      3360
     tggcacagaa cattaaaagc ggccttaaaa tgcgccgatc ctattaactg gagcagttcc      3420
     ctgcacttaa tcctcctagg cctacgtaca acagttaaaa gcgacattgg gttgagccca      3480
     gctgaaatgg tttacggcac cgctctacgt gtccctggcg gattttttac accaaacaca      3540
     caaaaacata ccgagtctga gttcgccgag gctcttcaaa aaaccatatc tcagctacca      3600
     accactaagc cagtgcacca tcatacaccg caggaatttg tgcacccgga tttaaaccat      3660
     tgtacccacg tcttcgtcag agtggatcga gtcaaaaccc ctctagaagc aaactacgag      3720
     ggtccgttcg aagtgctagc aaagcacgac aagtacttta cgctcaaagg acatacaaaa      3780
     gacaacaagg tgtctatcga cagacttaaa ccggcataca tcttccaaaa cgaatctccc      3840
     tcgactcaag ggaaaacgac agcgccaact gcccagccaa ccgatcagtt atcaagatca      3900
     ggacgacgag tcagattccc aacaaagtat ctttcctaac aggaactcta ggaggggggt      3960
     ac                                                                     3962
//
ID   Gypsy-7_DAn-LTR repbase;    DNA;    INV; 193 BP.
XX
AC   AAPP01018003;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DAn_;
KW   Gypsy-7_DAn-LTR; Gypsy-7_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-193
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018003; Positions   47367   47175.
XX
SQ   Sequence 193 BP; 62 A; 45 C; 28 G; 58 T; 0 other;
     tgtggcaacc ctaagtgctt accataacac aatcgaactc gatatcttat gagagtatcg        60
     atttcgccgg aggccatctc taaacaacac aaccttttct acatctcatc acatcgacag       120
     cttcatctgc agctagcaac gcttttgtta attttcatta gttttaagca aatatatagt       180
     gaataaatga aca                                                          193
//
ID   Gypsy-7_DAzt-I repbase;    DNA;    INV; 4672 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4672
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 761-761 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           133..4044
FT                 /product="Gypsy-7_DAzt-I_1p"
FT                 /note="reverse transcriptase, ribonuclease H and
FT                 integrase."
FT                 /translation="MAVVLPKFNPDRDGADPRSWSETVDYILSENPLEGSA
FT                 LVMTLSKSLQGSASHWLSQTCFAGITWKQFRELFLQHFAGTETVAATVMNL
FT                 LTGRPKEGECMSLYGSRMVTSLMSRWKSLSVEQIAVSVALAHTAGIDKRLR
FT                 RLVFTTEVKTRIEMHQELKAFSFDTKPSQNSNDDSSGPPGKRLKLFPHIKC
FT                 HKCGKPGHKKMDCRSNRETTLQQKPANQHSAYTGGKDRSTLTCYNCGKPGH
FT                 VSTVCPERRAPNKSNIVKDVNMCTVLEPLGTLLQFGESFQFCFDSGAECSL
FT                 IKETASLRLSGSRINNVVVLRGIGNNTVCSTLQILANVLMCEHSLEILFHV
FT                 VLDNYIKYDVMIGREILSRGIGVTITSNSLTMFNEKSIMPVLVTECDPDLA
FT                 NVDTDLLGPDKDQLLSILREFSKSFITGIPQSRVTTGQLEIRLIDENKTVQ
FT                 RRPYRLSVEEKGQVRCIVQQLLDSNVIRPSSSPFASPMLLVRKKNGSDRLC
FT                 VDYRELNANTVSDKYPLPLIADQIARLSGAKFFTCIDMASGFHQIPVHPNS
FT                 IERTAFVTPEGQFEYLAMPFGLKNAPAVFQRAINNTLGDLTHSFVIVYMDD
FT                 VMVVAPTKEEAFDRLQLVLRTLSKAGFSFNVTKCSFLKSCVEYLGFEVKAG
FT                 EIRPNPRKIRALTNWPPPQSVTQLRQFIGLVSYFRQFVPKFSQMLKPLHAL
FT                 TSKSASFKWNLEYEQIRQKVIWILTNEPVLTIFDPQFPIELHTDASADGYG
FT                 AILLHKIDNRPRVIEYFSKRTSPAESRYHSYELETLAVYNAIKHFRHYLHG
FT                 RHFVVFTDCNSLKASRNKAELTPRVHRWWSYMQSFEFEIEYRPGERMAHVD
FT                 FLSRNPVSEGQTKAAGVAEVHINLTEITDNWLLAEQQRDEETSCIVSKLRS
FT                 NELSEELAKTYELRGGILYRKIQRNGKTRCLPIIPKSFRWSAVNNVHEAIM
FT                 HLGWEKTLEKMYEFYWFDKMCKYVRKFVENCITCRLSKPPSGKIQAELHPI
FT                 LKIDIPWHTVHIDITGKLSGKNDQKEYIIVQIDAFTKYVYFSHTVRLDTES
FT                 CIKAVRSLISLFGVPTRLIADQGRSFSSTAFRDFCSAQKIDLHLIATGASR
FT                 ANGQVERVMSTLKSMLTAVETGQGSWQDALHEVQLALNCTPNRVTKVSPLE
FT                 LLIGKEARPFGLIPVVENENSVDVNLARQIAKHNMTKNANYDKARFDRDKA
FT                 TIIRHKVGDYVLIKNEERHQTKLDPKYRGPFLVAEVLEGDRYTLKALNSNR
FT                 TYKYSHEFLRSMPEKGITTEFNDKFGEEGDTNRVSEDCDVESE"
XX
SQ   Sequence 4672 BP; 1412 A; 852 C; 1090 G; 1318 T; 0 other;
     tcagaagtgg gattagctac gcctgaagtc agcggtgaag ataatattcg agctctcttg        60
     gaatcacaga atcgccactt ttcggaactc attaaagtag tccagcgttc gcaagtaaca       120
     gcgaacgata ccatggctgt tgtactgccc aaattcaacc ctgatcgtga cggcgcagat       180
     cctcgttcgt ggagtgaaac agtggattac attttgtccg aaaatccatt ggagggcagc       240
     gctttggtga tgactcttag caagtcgcta caaggtagcg cgtcacattg gctttcgcaa       300
     acatgctttg ctggcattac atggaagcag ttcagagagt tatttctgca acattttgcc       360
     ggaacggaga ccgtggcggc gacagttatg aatttactaa ctgggcgtcc caaagaagga       420
     gaatgtatgt cgctgtatgg aagccgaatg gtaacctcgc tgatgtctag atggaagtca       480
     ctgagtgtgg agcaaattgc agtgtctgtt gctctggcac atacagcggg aattgataag       540
     aggctgcgac gcttggtttt tactacggaa gtaaagacga gaatcgagat gcaccaagaa       600
     ctaaaagcct tctcgtttga cacaaagccg agccagaatt cgaacgatga ttcatcagga       660
     ccaccaggaa aaagactcaa gctgtttcct cacattaagt gtcacaagtg tggaaaacct       720
     ggccacaaga agatggattg tcgctcaaat agagagacaa ccttgcagca aaagcctgct       780
     aatcaacact ctgcctatac aggaggaaaa gatcgatcaa ctttaacctg ttacaactgt       840
     ggaaagcctg ggcatgtgtc tactgtgtgt ccggagcgtc gagcgccgaa taagagtaac       900
     attgtcaaag acgtcaacat gtgcaccgta cttgaaccct tgggaacttt gttgcagttt       960
     ggtgagtcgt tccaattttg ttttgactca ggagccgagt gctcgctcat taaggagact      1020
     gcttcattga ggttatctgg atctagaata aataatgtag tcgtattaag gggtattggt      1080
     aacaacacgg tttgtagcac tttgcagata ctggcaaatg ttttgatgtg cgaacattcc      1140
     ttagagatct tattccatgt tgtcctagat aactatatta agtacgatgt tatgattggg      1200
     cgggagattt tgagccgggg aatcggcgtg acaattacat ctaactcact tactatgttt      1260
     aatgaaaaat cgataatgcc tgtcctagta actgaatgtg atcctgacct ggctaatgtt      1320
     gatactgact tgcttggacc agataaagat caattgttat caatattgcg ggagttttct      1380
     aaatcattca ttactggaat tccgcagagc cgcgtgacca cgggacagtt ggagattcgt      1440
     ctgattgacg aaaataaaac agttcagaga cgcccttata ggttgagtgt ggaggaaaag      1500
     ggacaggtta gatgcatagt tcaacagtta ttagactcaa atgtcataag acctagttcc      1560
     tccccctttg cgagtccgat gttacttgtt cgaaagaaaa atgggtcaga tcgtttatgc      1620
     gtagattata gggagcttaa cgcaaacact gtttctgata agtatccttt accacttatt      1680
     gcggaccaga tagctagatt gagtggtgct aaatttttca cctgcattga catggcaagc      1740
     ggatttcacc aaatcccagt acacccgaac tcaattgagc ggacggcatt cgtgactcca      1800
     gagggacagt tcgaatattt agctatgcca tttggtctta agaatgcccc cgctgtattt      1860
     caaagggcca ttaacaatac attgggtgat ctcacccact catttgtgat tgtttatatg      1920
     gacgatgtaa tggtagttgc acctacaaaa gaagaagcct ttgatagatt acaattagtt      1980
     ttgcgaacac ttagcaaagc aggattttcc tttaacgtca ctaaatgttc gtttctcaaa      2040
     tcttgtgttg agtatttggg attcgaagtt aaagcaggtg agattcgacc aaatcctaga      2100
     aaaatacgag ccttgacaaa ttggccgcct ccgcagtctg tgacacagtt gaggcagttc      2160
     atagggctag tttcatattt tcggcaattt gtgccaaagt tttctcagat gttaaagcca      2220
     cttcatgcct taacttctaa aagcgcatct ttcaaatgga acttagaata cgaacaaata      2280
     cgacagaaag ttatttggat cctgactaac gaacctgttc taactatatt cgatccgcaa      2340
     tttcccattg agcttcacac agacgcaagt gctgacggct atggggcaat tttgttgcat      2400
     aagattgaca ataggcctcg tgtgattgag tattttagca aacgaacgtc acccgcagaa      2460
     tctcgatacc actcgtatga attggagacc cttgctgtgt ataacgctat taagcacttt      2520
     cgccattact tacatggccg tcattttgta gtgtttacgg attgtaattc gcttaaagcc      2580
     tctcgcaata aggcagagtt gactccaaga gtacatcggt ggtggtcgta tatgcaatcg      2640
     tttgaatttg agatagagta cagaccgggt gagcgaatgg ctcatgtaga tttcctttct      2700
     cgaaacccag tgtcagaagg tcaaacgaag gcggcaggtg tggccgaagt gcacataaat      2760
     ttgacagaga ttactgacaa ctggctgttg gctgaacagc aaagagatga agaaacttcg      2820
     tgtattgttt ctaaattgcg tagtaatgag ctttctgagg aactggccaa aacttacgaa      2880
     ttacgaggtg gaatattgta taggaaaatt cagagaaatg gcaagacgcg ttgtcttcct      2940
     attatcccta agtcgtttag gtggtctgct gtcaataatg tacacgaggc gattatgcat      3000
     cttggttggg agaaaacttt agagaaaatg tacgagtttt attggtttga caaaatgtgc      3060
     aagtatgtcc gcaaattcgt tgaaaactgc attacctgca gattgtctaa accaccttca      3120
     ggcaaaatac aagctgaact acaccccatc ctgaaaattg atattccgtg gcacacagtt      3180
     catatcgaca tcactggaaa gcttagcggg aaaaatgacc agaaggaata tataatcgtc      3240
     caaatagatg cttttaccaa atacgtttat ttttctcata cggtgaggct tgatactgaa      3300
     agttgtatta aggcagtgag gtctttgata tcgttgtttg gcgtccctac tcggctgatc      3360
     gcggatcaag gtcgaagttt ctctagtaca gcgttccgag atttttgctc tgcacaaaag      3420
     atagacttac atttaattgc aacaggtgcc agtcgggcta atggccaagt ggagagagta      3480
     atgagtactc tgaaatccat gttaaccgca gttgagacag gtcagggttc ttggcaggac      3540
     gcattacacg aggttcaact ggctcttaat tgcacgccca atagagtaac taaagtaagc      3600
     ccattagagt tgcttatagg aaaagaagcg aggccatttg gtcttatccc cgtcgttgaa      3660
     aatgaaaata gcgtagatgt taatttagct cggcaaattg caaagcataa tatgacaaag      3720
     aatgctaatt atgataaggc tagatttgat agagataaag cgactataat acgacataaa      3780
     gttggtgact atgttctgat taagaatgaa gaacgacatc aaaccaaatt agaccctaag      3840
     tatagaggcc catttttagt ggcagaagtc ctagaaggag atcggtatac gctgaaagcg      3900
     ttaaatagca accgaacata caagtactct catgaatttc tacgcagtat gcctgaaaag      3960
     ggaattacca ctgagtttaa tgacaagttt ggcgaagaag gtgatacaaa tcgagtcagt      4020
     gaggactgcg atgttgaaag tgagtaagat gtgataaact tcgatcaaag attgtacggc      4080
     tctctgcaag gtgggtgccc gagttatgcg gttcgccact tgatgcattg tagttggaaa      4140
     tcttggtgag gatcgattgt ccgagttaat tggccggttt atagttgtga caactgcgtg      4200
     ctatgtaatt tggccggttt gttgagatat aatctgtgag ctagactaac aaggatattg      4260
     ccatgccggt ttatctgaag taaactgtgt gcctggtagt aaaagccaag aagtgagaat      4320
     agtattgtca tgtgaaataa atttaaagta gtggtaatcc cgatgtcatg gcgtagagtg      4380
     gtgagatgtg cacagttaaa agaaaataat aataataaaa taagtaacga aaatgaatta      4440
     aaaatgatta tgttatttta cgaaactctt ggaaatattt aatctttgcc gcagtaacta      4500
     atgtaaaatt gaaattgtta gtttgagaaa tttgaaaata tttaactcta atgaagatga      4560
     attaataata attgttattt tgagaaactt atgaaattac ttaatttgtc atttttgtta      4620
     atgaaaataa aattagttaa cacacgagga cgtgtgtgtg tcaggaaggc cg              4672
//
ID   Gypsy-7_DAzt-LTR repbase;    DNA;    INV; 449 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-449
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 811-811 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 449 BP; 139 A; 69 C; 102 G; 139 T; 0 other;
     tgtcgcatat tacgtttaat aaattcaaat tataacgaat gtcgcatatt acgtttaata        60
     aattcaaatt ataacgaact tcttgcttat tctccttgtc ttctgttttt gatgtcattt       120
     gccattgcct gttgtttctc ttgaaagcga gacagaacgt ttctgtcaac gtagtccgag       180
     cgtgagcatg agtgagatgg aagtagctgt gtgtgtgaca gcataaaaca gaataagaat       240
     tagacactgg aaagtgtaat ggtgttaaag tggaaaaggg attgtaaatt gagaatagag       300
     aaaagatgtt ctctgcttct ggctgattat tccttgtttg gtcgttgaaa gaagaagaag       360
     tcatgccacg ctcgagaaaa cgtttcgcaa aacaagccgt gcaaatggaa agagaaatgg       420
     actctggttc tggcaatgaa tcttcgtca                                         449
//
ID   Gypsy-7_DBi-I repbase;    DNA;    INV; 6787 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DBi_;
KW   Gypsy-7_DBi-LTR; Gypsy-7_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-6787
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 833-833 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4543-5022] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           849..1832
FT                 /product="Gypsy-7_DBi-I_3p"
FT                 /translation="MSDSDGEILEEYRKLLETKIKKHTTRENQDFNEEGSH
FT                 TSTSGNTGKVLIRKSAFDTENLETSRQHRQAEMQPEQLANMEAAINQALQR
FT                 QQTQFDEKLATIMGELNLLRKTPKIQTFQEIQIEPEKQCNEPLDIIKSVPE
FT                 FDGKQENYVSWRQAAIAAYRVFEPYEGSSRFYQAVAILRNKVRGPAAAVLA
FT                 SFNTVLNFHAILARLDFTYADKTPTHVIQQELSLSRQGDLPLLKYYDEVER
FT                 KLTLLTNKTIMTHDAAAASVLNTQFRSDALHAFISGLKKSLKVAVFPAQPP
FT                 DLPSALALAQEAESSNERSIFAATFVDITTKRLIGN"
FT   CDS           5506..6786
FT                 /product="Gypsy-7_DBi-I_2p"
FT                 /translation="MTKTFTDDHRTPVILTDLRHIRKLVATLKIHNRAARS
FT                 INVIGTALKVIAGTPDFSDWEQIKINQEILMRTNEGQTDLNIKFQERLNEL
FT                 ANAMNKIQKFDTEKETHLLEIILAKNRIVITDLENILMGLTLAKINIVSPA
FT                 ILDSTDIGEFKDKQPINISLVEILEVSSISVFQNSEILHFLIKFPTPKFVC
FT                 KKVTVYPVQHNNKILDFENGNLVAECPTQNLNIGYCKATVGATFCRELQNN
FT                 TCAQQIVSGTTAHCLTLPGHLEPVTIVDHGTLIINDVNATITDDQGRDQGI
FT                 SGTYLVTYSDKVAVNGTWFINQLGSSKKKPAVSAMTVVNITGHHNRLSLPF
FT                 LHELSLRNLHHIGTLNERYSMRSFLNNSLIILVAILLCCIIWLGKHYLKNK
FT                 RLARSRAADDIEQTGHRDGDHLKEGEVNTRKKN"
FT   CDS           2968..5259
FT                 /product="Gypsy-7_DBi-I_1p"
FT                 /translation="MISTILSNMGESKFFTTLDLKSGFHQIELAEKDREKT
FT                 AFSINNGKYEFCRLPFGLKNAPSIFQRAIDDVLREGISKICYVYVDDVIIF
FT                 SKTKEDHINDINWVLQKLLEAGMRVSQEKSKFFKKSVEYLGFIVSQGGLRT
FT                 SPEKVKAIKEFPPPKTLFELRSFLGLASYYRCFIKNFAAIARPLTSILKGE
FT                 NGKTSKYQSRKIDIDLNKEQSETFHRLREILASEDVLLSYPDFKRPFDLTT
FT                 DASGFGLGAVLSQDGRPITMISRTLRDNEKNFATNERELLAIVWALKNLRN
FT                 HQPLTFAVSDKNPNAKLKRWKGIIDDHGAKLIYKPGKENFVADALSRQNIN
FT                 ALEDTVESDAATMHSEQSLTYTIETTDKPVNCFRNQIIIEEGNSSSVSTLI
FT                 LFKTKVRHIVNISDHDNLLNALQDVVNANAVNAIHCSLPILAKIQHRLVEL
FT                 FPGTVFRHTKYFVQDITDKSEQKEIILTEHNRAHRAAQENVKQILRDYFFP
FT                 KMLNLATEITLNCKTCSMAKYKRHPSKQAIAQTPIPGYVGEILHIDIFSTD
FT                 GILFLTCVDKFSKFATVQAIASRAIVDIKAPILHIVNFFPNIKTIYCDNER
FT                 SLNSETIKSMLLNNFNITISNAPPLHSTSNGQVERFHSTLAEIARCLKIEH
FT                 NLNDTTEIILLATNKYNKSIHSVTNEKPIEIVHSKPAEFEREISKKIQQAQ
FT                 EKTLDQMNKDRTHRNYQVGEKVFLKANKRLGNKLSPLCSEGIIEADLGTTV
FT                 LIKGRVVHKDNLR"
XX
SQ   Sequence 6787 BP; 2440 A; 1460 C; 1305 G; 1579 T; 3 other;
     attaaataac tggcgcccaa taggaataat tttcaaaaat ccaccaaaat taaaccaaat        60
     tcaaaaaagt gaaaaagtgg agtcaattga aaatctagaa cccaaattaa aattaaatca       120
     aattccaaaa agtggaacga atattacaaa agtgcaagtg tttgagcatg tgaacgcaaa       180
     ccccccgcag gaataaacga cmgaaaggga gctgtgggga aacccmtcgc ccccctccgt       240
     gggagtaasa gagcaacagg gagctgcagg gaaacccctc gcccccctcc gcgggaaaaa       300
     ttgagcaaaa gggagctgta gggaaacccc tcgccccatc cgtgggatct acagcaacag       360
     cagcagaatc cagcaacaat tataagaata tttaagaaaa tgtaagtagg ctatttgtcc       420
     gaattatcat aaataaaaac gcaaatataa aacggttcgc taaatctgtg agcattgaaa       480
     taaaacgatt aaacttaaat aacacttacc gtgtcgtctc gtatttcaaa gaatacaccg       540
     ggagaattgg ttcaaatttt taccaaatat aaaccatata atttaaaacc aaagtttttg       600
     tgtaaatttt tttttttaaa aaagccaaaa tcgataaatt taccgaaaga aataatataa       660
     aaaatacaca agataatatt ttaaaactta aaaacattta tgaatagtaa ataaaacttt       720
     atatttctta aacaacgttt ttaatgatat ttgatattat ttctccccgc taatttaatc       780
     aataatataa aaaaaacaac tcttgatcaa tttttatgat gaccatatat ttttaccaat       840
     attaacacat gtccgattca gacggggaga ttttagaaga gtataggaag cttttagaaa       900
     ccaaaataaa aaagcataca acgagagaaa atcaggattt taacgaagag ggtagtcaca       960
     cgtcgaccag tgggaacaca ggcaaggtac ttatccggaa gagtgccttc gatacagaaa      1020
     atctagaaac tagtagacag cacagacaag cagaaatgca gccagaacaa ttagcaaata      1080
     tggaggccgc aataaatcag gcacttcaaa gacagcagac gcaatttgac gaaaaattag      1140
     ccacaattat gggggagcta aatttactaa gaaaaactcc gaaaattcaa acattccaag      1200
     agattcaaat agaacctgaa aagcaatgta atgagcccct ggacattatc aagtccgtcc      1260
     cagaattcga cgggaaacaa gaaaattatg tttcctggag acaagctgct atcgcagcct      1320
     acagggtatt tgagccctat gaagggagca gtcgctttta ccaagcggtc gcaatcctca      1380
     gaaataaagt aaggggaccg gcagctgccg tattagcttc atttaatacg gtgctaaatt      1440
     ttcatgccat attggcacgt ttagacttta cgtatgccga caaaacaccg acacacgtaa      1500
     tacaacagga attaagcctg tccagacagg gcgacctgcc cttactcaaa tattatgacg      1560
     aagtagaacg gaagctaacg cttctgacaa acaaaacaat aatgacgcac gacgccgccg      1620
     cggcgtctgt tttaaacaca caatttagga gcgacgcttt acacgcgttt atatcaggtt      1680
     taaaaaaatc tttaaaggta gctgtttttc cagcacaacc acctgattta ccgtcggcat      1740
     tagcattagc tcaagaagcc gaatcgagta acgaaaggag tattttcgcg gccactttcg      1800
     tcgacataac gacgaaaaga cttataggca actaaccaaa acaaccagga caggctggtt      1860
     ggaaaaattc acaataccaa gagcaaaatc aaattcgggg gcgataaaaa aaaccctcat      1920
     ttcataagac ctcaaagagg aggcaataat caaactggtt cgtcccggca aaaaacacac      1980
     actaatgggg gaaataatca gggacaaact agaacagaac cgatggaggt ggacgccacc      2040
     tcatctcgat tcaggcaacc cacgacatgg caaaagggac agtcagcacg aacacaacaa      2100
     aaaatcaact tcatgccaga agaagaatct ggtggagaag attatgagtc cgttgctcag      2160
     gcgtccgcca cggaaataca ggatgatcta gacacagatg agtcttgtaa ttttttaggg      2220
     taaagtccct gcttccatac gtcacacgta ggctagcagg aagagaaata aaattgttaa      2280
     ttgacacggg cacctcgaag aatttcatct ctccactccc ggggctcaaa ggcatcgtgg      2340
     cagtggatac cccattcgac gtaaaatcaa tccatggcat tactaaaata aatgaaaaat      2400
     gcctgatttc ggtattcaag gctaaaaccc tttttttatc cttagcgctc ttaaagactt      2460
     tgacggtatt atcgggctcg atttacttaa acaagtaaat gcgaaactcg attttactgg      2520
     aaatgttcta cacaccaata acggaactga gaaaattcag tttacaagag ttgagaatgt      2580
     aaatttcatt aaaatcaatg atggtgacgt gccccccgca gtaaaaactg cttttgataa      2640
     aataataata aaaaaccgta aagccttcgc cgatccagac gaggcgctac ctttcaacat      2700
     taacacggta gctacgataa aaacggatgg ggagccggta tattccaggt catacccgca      2760
     ccccatgggt gtaaccgagt tcgtcaacgc agaggttaaa caacttctag cggacggcgt      2820
     aataaggcca tccaaatctc cttataacaa cccaacctgg gttgtagata aaaaaggaat      2880
     tgaccaaaac gggttaaaaa aaagcgattg gttatcgact ttaggaagtt gaaccaaaaa      2940
     acagtggacg atagataccc tatccctatg atttcgacaa tactgtcaaa tatgggagag      3000
     tccaaatttt ttaccactct tgacctcaag tcaggtttcc accagataga gctggcagag      3060
     aaagaccgag aaaaaacggc tttttcgata aataacggca aatacgaatt ctgtagactg      3120
     ccttttgggc tcaagaatgc tccaagtatt ttccagagag ccatagatga tgtcctaaga      3180
     gaaggaatat ctaagatatg ctacgtttat gtcgatgatg ttataatatt ctccaaaacc      3240
     aaagaagacc atattaacga tatcaattgg gtattacaaa aacttcttga ggccggcatg      3300
     agagtatccc aagaaaagtc aaagttcttt aaaaagagcg ttgaatatct cggattcata      3360
     gtgtcacaag gggggctgcg gacatcaccc gaaaaagtga aggctatcaa agagttcccc      3420
     ccgccaaaaa ctttgttcga acttagatcc tttctaggac tagcaagtta ctacaggtgc      3480
     tttattaaaa acttcgcggc aatcgccagg cccctaacaa gtatccttaa aggcgaaaac      3540
     ggaaagacga gcaaatatca gtcaagaaaa attgatatcg atcttaacaa agaacaaagt      3600
     gaaacattcc acagactaag agaaatccta gcatcagaag atgttttact ttcctatcca      3660
     gactttaaga gaccgttcga tttaacaacg gatgcgtcag gctttggtct aggggcggta      3720
     ctatcgcaag acggacgccc gataacaatg atatcacgaa cactacgtga taacgaaaaa      3780
     aattttgcca ccaacgagcg agaactcctc gccatagttt gggcacttaa aaatcttcgt      3840
     aaccaccagc ctctaacttt cgctgtctca gacaaaaacc ctaacgcgaa attaaaacga      3900
     tggaaaggga ttattgatga ccacggggca aagctgattt ataaaccggg gaaagaaaat      3960
     ttcgtagcag acgcgttatc tcgtcaaaat ataaatgcat tagaagatac agtagaatct      4020
     gacgcggcta ccatgcacag cgaacaatcc ctgacctaca ctatagaaac aacggacaaa      4080
     ccggtaaact gttttaggaa ccaaataata attgaagagg ggaacagttc atcggtaagc      4140
     acactcattt tgtttaaaac caaggtgaga catatagtaa acatttcgga ccacgacaat      4200
     ttgctaaacg cgttacagga tgtagttaat gccaatgcag tgaacgcaat acattgctcg      4260
     ctcccaatcc tggcaaaaat ccagcaccga ctagtagaat tgttcccagg aaccgtattt      4320
     agacacacga aatatttcgt tcaagacata acggacaaaa gcgagcagaa ggaaattata      4380
     ttaacagaac acaatagagc ccatcgagcg gctcaagaaa atgtaaaaca aattttaagg      4440
     gactactttt tccccaaaat gcttaattta gccacagaaa taaccttaaa ttgcaagacc      4500
     tgttctatgg caaaatacaa acgccatcca tccaaacagg ctatagcaca aactccaata      4560
     ccaggttatg taggggaaat tctccatatc gatatctttt ccacagacgg aatcctcttt      4620
     cttacgtgtg tcgataaatt ttctaaattc gccacggtgc aggccatcgc atcaagggct      4680
     attgtcgaca ttaaggcccc tatattacac atagtaaatt tttttccaaa tataaaaaca      4740
     atttattgcg acaacgaaag gtcattaaat tccgaaacaa taaaatcaat gttattaaac      4800
     aactttaata ttactatttc gaacgcacca cctctccaca gtacctcaaa cggccaagtg      4860
     gagagatttc atagcacttt agcagaaata gcccgatgcc taaaaataga acataatctg      4920
     aacgacacca ctgagataat ccttttggct accaacaaat ataataaatc aattcattca      4980
     gtaaccaacg aaaaacccat agaaattgtc cattccaagc ccgcagaatt cgaaagggaa      5040
     attagcaaga aaatccaaca ggcacaagaa aaaaccctcg accaaatgaa caaagatagg      5100
     acccatagga actatcaagt cggcgaaaaa gtttttctga aagcaaataa acgattagga      5160
     aacaagcttt cgccgctatg ctcagaggga atcattgagg cagacctggg gaccacggtt      5220
     ctcattaagg ggagggtggt ccacaaggac aatcttcgat aacgatcctt actacgcttt      5280
     tagttattct attcttttca tattatttct aggttaagac aatatctttt tatcttggca      5340
     ctagtggctg ttaggacaga cgcgacggtg aaactcaacg actacacgaa cgcagactat      5400
     atcccgatag aagacaacga catcgtaatc tgggagactt acggatactt acaacacgca      5460
     acgaacctga caacttacga tgactacgtg gaccagacag aagcaatgac gaaaacgttc      5520
     actgacgatc ataggacacc agtaatatta acggacctcc gacacattcg caagttggta      5580
     gctaccttaa aaatccacaa tagagcagct agaagtatta acgtaattgg gacagccctc      5640
     aaagttattg caggtacgcc tgactttagc gactgggagc agataaaaat caatcaagag      5700
     attttaatga gaacaaacga gggacaaaca gatttaaata tcaaatttca agaacgctta      5760
     aatgaactcg cgaacgcgat gaataaaatt caaaaattcg atacagaaaa agaaacacac      5820
     cttctggaaa ttattttggc aaaaaataga atcgttatca cagatttaga aaacattctt      5880
     atgggcttaa ccctggcaaa aataaacatt gttagtccgg ctatcctgga tagcactgac      5940
     attggcgaat ttaaggacaa acagcctatt aatattagtc ttgtagaaat attagaagta      6000
     tctagcataa gtgtcttcca aaattcagaa attcttcact tcctaattaa atttccaact      6060
     cctaagttcg tatgtaagaa ggtaacggtc tacccggtcc agcacaacaa caagatccta      6120
     gactttgaga acgggaactt agtcgccgaa tgcccaacgc agaaccttaa catcggctac      6180
     tgtaaagcga ctgtaggcgc caccttctgc agggaactgc aaaacaacac ttgcgcacag      6240
     caaatcgttt ccggaaccac tgcgcactgt ctcacgctcc cgggtcacct agaaccggtt      6300
     acaatagtgg atcatggtac cctcatcatc aacgacgtta acgcaaccat taccgatgat      6360
     cagggccgag accagggaat atcgggaact tacctggtga cgtactccga caaggtagcc      6420
     gtcaatggaa cctggttcat aaaccaactg ggaagctcga agaagaaacc tgcagtatca      6480
     gctatgaccg tagtaaacat cactggtcac cataaccggc taagtcttcc atttcttcat      6540
     gagcttagcc tgaggaacct ccaccacatt ggaaccctta atgagcggta ctcgatgaga      6600
     tccttcctca acaattctct catcatacta gtcgccatcc tgttatgctg cattatctgg      6660
     ctcggcaaac attatctgaa gaacaaacgt cttgccagat caagggctgc cgatgacata      6720
     gaacagacgg gtcaccggga cggcgaccat ttaaaggaag gagaagttaa cacgcgcaaa      6780
     aagaatt                                                                6787
//
ID   Gypsy-7_DBi-LTR repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DBi_;
KW   Gypsy-7_DBi-I; Gypsy-7_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-359
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 834-834 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 359 BP; 105 A; 85 C; 92 G; 77 T; 0 other;
     tggaaaaatt gccaaattgc agaccggatc cgacggccaa cacgcgcaag ggcgaaactg        60
     ctgatcgcgc attcccgggg cagttgcccg ggctcggtcc caacacgcgc cgcgcgagtg       120
     atcgtcgcta gctggacggg aatgctgaca tcgcacttag gcggttgcgc ggcagcgcaa       180
     ataagggctt catggtgcga ccgggacaga ccttcagttt agtttaaaac tgaactccgc       240
     agctatagct ggcgatcaat attataatta acaatccatt gtatgaatta aaatatcttt       300
     ggcttgaaaa ggcttaagtg aaataaagaa ataccttggt atctaaataa agaaaccca        359
//
ID   Gypsy-7_DBp-I repbase;    DNA;    INV; 6601 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.05, Created)
DT   15-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DBp_;
KW   Gypsy-7_DBp-LTR; Gypsy-7_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6601
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 665-665 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2829-3257] - Reverse transcriptase
CC   Positions [4410-4886] - Integrase core
CC   LTRs are 91% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           863..2434
FT                 /product="Gypsy-7_DBp-I_1p"
FT                 /translation="MGKKNWIYTLRKEELSEVCRELGLPADGTVETMRSSV
FT                 ARWVDESKEEEVLALTHGLEERFGQRSTPRQRATSETEKFIESLAVPDPRM
FT                 GRSIEPQSRKYVPAPVDYAKVARQVRDWSFRFDGTGDPLEFLDRVTWSAKT
FT                 YGLDINTIPRAMPELLQGRAQRWFIMNDEEWPTWARFKASFENFFLPKGYF
FT                 EKLADQVRQRKQRRGEPFKEYMVDLQSLMKPLGKTTKEVIERLVENCMPRM
FT                 KMFIRPYACASLEEVMGLAEEFEELAQEEEAFNRQVATEQRWSHSQPAVNE
FT                 RWQREEPQHSEAARYQRDQWTQKGQRDEFHHQAVQNTQWAPRWQREEPRQG
FT                 PPERQNTRVKVGCRDGSLRPSIGRLRNNLISSGQQGQGRVLSRTQHKRATD
FT                 AVAWAIGPADAGTQGCCSARCAARQELEAQNAARGREMRSGPSNREESRDR
FT                 TVLPLKTNRRTIRRRAAVDGNHRGRGHGGESHAGYRSDGEFYIGGTSREPG
FT                 NSRETSRDKETGEVGQWKPYGNTRRVPG"
FT   CDS           join(2136..4136,4140..5285)
FT                 /product="Gypsy-7_DBp-I_2p"
FT                 /translation="MLPEVGKCAAVPATGRRAGIARCCLSKLIGGLSGEEQ
FT                 QLTATIEVEGTEVKAMLDTGATASFISEELAESPEIAGKRVAIRRRVKLAN
FT                 GSHTETRAAFQARISFGDRTKTLNLLVMPGMEDSLVLGWDFLSEFGATVTC
FT                 AGHRVTIPKRERWGGCLEDRLSVAVAGCPEVWEDERDKRFIERELEAFAGQ
FT                 RGCSNITQHRITMKDDIPIKQRYYPKNPKIQGEINAKVEELLEKGCIEPSN
FT                 SAYSSPIVMVKKKTGQWRMCVDFRQINAKSVKDAYPMPRINFILEQLREAR
FT                 FFSSLDLKDGYWQIPLEEGSRKYTAFTVPGKGLYQWKVMPFGLHSASATFQ
FT                 RALDQVIGPDMAPHAFAYQDDIIVIGRTKEEHMANLREVFRRLKAANLRIN
FT                 TEKCHFFRQELLYLGHRITSQGIGMDPGKVAAITELQPPTNVKGVRQFIGM
FT                 ASWYRRFVPDFAGIAKPLNDLLRKGTKWEWTPKHQEAFETLKSRLAEDPVL
FT                 ACPDFEKKFVLQTDASDYGVGAVLTQDTEEGERVIAYASRTLIGAEKNYSA
FT                 TEKECLAIVWAIRQMRPYLEGYQFDVITDHMALKWLNNIESPLGRIARWVF
FT                 ELQQYDYVISYRKGKLNVVADALSRQPVLEKLRRTADPEVKECVWISALKK
FT                 KMKASPQKFPDYVEEGGLYRHVPHRAGSEEVASWKLCVPTESRQQVLKENH
FT                 DAPAAGHLGVRKTIARVAARYFWPGMQRDIRKYVRRCETCLKYKPCQMQAA
FT                 GQMLTQVPEEPWATVCADFVGPLPRSKHGNTMVLVMMDRFSKWTEIVPLRK
FT                 ATTEALQKAIRERIVARYGVPKIMVTDNGVQFTSRSFKKFLGELGVRHQFT
FT                 APYTPQENPTERANRTVKTMIAQFAGEDQRTWDEHWPELMLAVNSAVSEST
FT                 GYSPCFVTQGREPRMPRALFDENALGTGVGQGTPTENATKLKEVFEIVRRN
FT                 MERAAQDQARHYNLRRRKWSPKVGETVWAKEHHLSKAAEGFAAKLAPRYDG
FT                 PYTVVDFVSPVIVIIRHGRTNKEKRAHVSELKCQDMGSPAKEE"
XX
SQ   Sequence 6601 BP; 1867 A; 1559 C; 2212 G; 936 T; 27 other;
     aggacccgtt gctggacggt ttcctctacg agcccggggc gtcggagtcg agtggggcca        60
     ttcccgaaca cggcaggtag ccttgcaagg aagtgaggaa aggataagtc tggcgtacgc       120
     cttaccgact cctggaatcg caaccaacag gcgtggtcct gcgaaacang gatcggccga       180
     ctcgagaact cgcgcccaag tcgcagaccg agcgagaaca ccccggtcac cagccccgcc       240
     actacaaact cgggttcgcc ggcgcgtatg cacggtgtcc cggtgtagcg ggggcgcgac       300
     acgcggtcag gcgcacggcg gcttccaaac ccggcgccgg agcgtatgca cggtgtcccg       360
     gcgtagcgga ggcgacagcc cggcaacttc caagccccgg ngtagcggag gcgacagacc       420
     gcngccaacc gtctgaccag tcgcagtcga cccaaggggg tgtttctcaa ggcaaaaggg       480
     cggagggtag cggaatcgct agcagcgcgg cgacaggagt accgtcggcg acggagtagc       540
     ggcggcgtat cctggacaac ccgcagagga cgccgacgac ggagccggca gaaacggaag       600
     gagcaacgag gaagagagaa agaaagcctt ttgtagtgna aagaggtctc gaaataaaga       660
     gtgtggaaac ttcaagctat ttgtattact ttctgggctc gggcaatcac gtcgaatcta       720
     taaattcggt ggaacggatc cgcgaaactc tgtgagctag ccgcggcaaa ttgtggcgag       780
     cggaagcaga aaaaacagtt cgttacacct ggcgcccaaa cttcgtgatt gcatttagcc       840
     tagaaaataa catagcagaa agatgggaaa aaagaattgg atctacacat tgagaaagga       900
     ggagctgagc gaagtgtgta gagagctcgg tctaccagcg gacgggactg tggaaacgat       960
     gagatcctca gtggcgaggt gggtcgacga atccaaggaa gaggaagtac tggcgttaac      1020
     gcacggcctc gaggaaaggt ttgggcaaag atcaaccccc aggcagagag cgaccagcga      1080
     gaccgagaag tttatagaga gcctggcggt accagatcca agaatgggaa ggagcataga      1140
     gccgcaatca agaaagtatg ttccggcccc ggtggattac gccaaagtgg ccagacaggt      1200
     gcgagactgg tcgtttcgtt tcgacggcac aggggacccg ttagagttcc tggaccgagt      1260
     gacgtggtcc gcgaagacat atggattgga cataaacacg atccccagag ccatgccaga      1320
     actactgcag ggcagggccc aaagatggtt catcatgaac gacgaagaat ggccaacatg      1380
     ggcgaggttc aaggcaagct tcgagaattt tttcctgccg aaaggatact tcgaaaagtt      1440
     ggcggaccaa gttcgccaac ggaagcagcg tcgcggagag cccttcaaag agtacatggt      1500
     ggaccttcag tcactaatga aaccattagg gaaaaccacg aaagaagtaa tcgagaggct      1560
     cgtcgaaaac tgcatgccaa ggatgaagat gttcataaga ccatacgcct gcgcgtcttt      1620
     agaggaggtg atgggcctgg cagaggagtt cgaggaatta gcgcaggagg aagaggcctt      1680
     taacaggcaa gtcgccacgg aacaaaggtg gagccacagt cagccggccg taaacgagag      1740
     gtggcagaga gaagaaccgc agcatagcga agcggcaagg taccagaggg accaatggac      1800
     ccagaaaggg caacgggacg agttccacca ccaggccgtc caaaacacac aatgggcacc      1860
     aaggtggcaa agagaggaac cgcgccaagg cccgccggag cggcagaaca cacgagtcaa      1920
     agttggatgc cgagatggca gcctgagacc cagcataggt cggctccgca acaacctaat      1980
     cagcagtgga cagcagggcc aaggcagggt cctgtcgaga acccagcaca agcgtgcaac      2040
     agatgcggtg gcatgggcca ttgggccagc ggatgcagga acccaaggtt gttgttctgc      2100
     aagatgtgcg gcgcgacagg agttagaagc acagaatgct gccagaggtc gggaaatgcg      2160
     cagcggtccc agcaacaggg aggagagcag ggatcgcacg gtgctgcctc tcaaaactaa      2220
     taggaggact atccggagaa gagcagcagt tgacggcaac catcgaggtc gagggcacgg      2280
     aggtgaaagc catgctggat acaggagcga cggcgagttt tatatcggag gaactagcag      2340
     agagcccgga aatagccggg aaacgagtcg cgataaggag acgggtgaag ttggccaatg      2400
     gaagccatac ggaaacacgc gccgcgttcc aggcncggat aagcttcggc gacaggacaa      2460
     agaccctgaa cctgctggtg atgccgggca tggaggacag tctggtgctg ggatgggatt      2520
     tcctcagcga gtttggcgca acggtgacat gcgcaggcca ccgcgttacc atacccaaaa      2580
     gggagagatg gggcggctgt ctggaggata gactgtccgt agcagtggcc ggatgcccag      2640
     aggtatggga agacgaacgc gataagagat ttatcgagag agagctagag gcgttcgccg      2700
     gccaaagagg atgctcgaac ataacgcagc acaggatcac gatgaaggac gacattccca      2760
     taaaacagcg atattacccc aaaaacccga aaatacaggg ggaaataaac gcaaaagtgg      2820
     aggagctgtt ggaaaaggga tgcatcgagc cctcgaatag cgcatacagc tcacccattg      2880
     tgatggtgaa gaaaaagacg ggtcaatgga gaatgtgcgt ggacttccgg caaatcaacg      2940
     caaaatcagt aaaagatgcg tacccaatgc cacgaataaa tttcatattg gagcaactga      3000
     gggaggccag attcttcagc agcctcgact tgaaggacgg gtattggcag atccctctgg      3060
     aggaaggaag cagaaagtac accgccttca ccgttccagg gaagggtctg taccaatgga      3120
     aggtgatgcc gttcgggttg cactcagcct cggcaacgtt tcaaagggcc cttgaccagg      3180
     tcatagggcc ggacatggct ccacacgcct tcgcgtatca ggacgatatc atcgtgatcg      3240
     gacgcaccaa ggaagaacac atggcgaacc taagagaggt gttcagaagg ttgaaagcgg      3300
     caaacctgcg gataaacacg gaaaaatgtc attttttcag gcaggagctg ctatacttgg      3360
     gacacagaat aacgagccaa gggatcggca tggatccggg gaaggtcgcc gccattacag      3420
     agctgcaacc cccgacgaac gtcaagggag tacgccagtt catagggatg gcgtcgtggt      3480
     atcggcggtt cgtcccagat ttcgcgggaa tcgcgaagcc cttgaacgat ctgctacgaa      3540
     agggaacaaa atgggagtgg acacccaagc accaggaggc gttcgagacn ctaaagtcac      3600
     ggctggcgga ggatccagtg ctggcgtgcc cagacttcga gaaaaaattc gtgctgcaaa      3660
     cggacgccag cgactacggc gtcggggcgg tcctgaccca ggacaccgag gagggcgaac      3720
     gagtgatcgc gtacgccagt cggacgttga ttggggccga gaaaaattac tcggcaacgg      3780
     agaaggagtg cctagccata gtatgggcga tcaggcaaat gaggccctac ctggaggggt      3840
     accagttcga cgtaatcacg gaccatatgg cgctgaagtg gctcaacaac atcgagagcc      3900
     cgcttggaag aatagcgagg tgggtgttcg agctgcagca gtatgactac gtcatcagct      3960
     accggaaggg taagctgaac gtggtcgccg acgcgctatc ccgccagccg gtgttggaga      4020
     agttaagaag aaccgcggat ccggaagtca aagagtgcgt gtggataagc gcgttgaaga      4080
     agaaaatgaa ggcaagcccg caaaaattcc cggattacgt cgaagagggc ggcttgatnt      4140
     accgccacgt cccgcataga gcaggaagcg aggaagtggc gtcatggaag ttgtgcgtgc      4200
     ccacggagtc gaggcagcag gtcctcaaag agaaccatga cgcaccggcg gcaggacacc      4260
     taggcgtgag gaagacgata gccagagtgg ccgccaggta cttctggcca gggatgcaaa      4320
     gggacatccg gaagtacgtc aggaggtgcg aaacttgcct aaagtacaag ccgtgccaga      4380
     tgcaggcagc aggacaaatg ctgacgcagg tcccggagga gccatgggca acggtgtgcg      4440
     cggacttcgt gggtccattg ccaaggtcga aacacgggaa tacaatggtn ttggtaatga      4500
     tggaccggtt ttcgaagtgg acggagatag tgccgctgcg gaaagcaacn accgaggcgc      4560
     tgcaaaaggc gatcagagaa aggattgtcg ctcggtatgg agtaccgaag ataatggtaa      4620
     cggacaacgg cgtacagttc accagccgca gctttaagaa gttcctcggg gagctcggcg      4680
     tgcgccacca gttcaccgca ccatatacgc cgcaggagaa tccaacggaa agggcgaata      4740
     gaacggtcaa aacgatgatc gcccagttcg ctggggagga ccagaggacg tgggacgagc      4800
     actggccaga gctaatgctg gcagtgaact cggcagtgtc ggagtcgacg gggtattcgc      4860
     cgtgctttgt aacgcagggc agggagccaa ggatgccgcg agccttgttc gacgaaaacg      4920
     ctttaggcac aggagttggg caaggaacgc ccacggagaa cgcgacgaag ctgaaggaag      4980
     tcttcgaaat agtgcggagg aacatggagc gggcggccca ggaccaggcg aggcattaca      5040
     atttacggag gcggaagtgg agcccaaagg tcggcgaaac agtgtgggca aaggagcacc      5100
     atttgtcgaa ggcggcagag ggattcgcgg cgaaactagc gccacggtac gacgggccct      5160
     acacggtcgt cgatttcgtt tcgccggtaa ttgtcatcat acggcacgga aggaccaaca      5220
     aagagaagag ggcacacgtg agtgagctga agtgccaaga catgggatca ccggcgaagg      5280
     aagaatagaa cagcaacact aaacccgcac aagtgtacaa gaggactgca cagtggaaaa      5340
     cgggacatgt ccagtaacgg gagccttaac aggtccagtn acggaaccgt aacggggcat      5400
     atccagtaac gggagccgga tgtgctataa aaggcggccg ctgggaggag cacggtctat      5460
     tcgaaagttc cancaagcgg agcaacatgt caaactcgga ggcgaccgtc gtggtntcgt      5520
     cggacgagag cgacctggag gtggtcggcg atccgtcctg gaacgggaga aaggcgagga      5580
     cggagtgggc gatcnagcgg gcagcaggag gacggaggcg catacccgtc ggtcgcgcca      5640
     cggtggagga gcggcgccgg agcgaggtgc tggagctccg aaggagatcc gagaggtgcc      5700
     gccggcgnca ggaggcgacg gtcaccgtcg cggacacggc caggaagagg gcccagcggg      5760
     cggagnagat ccgcgaggag aacgccaggg agtggaagga gatacgagag acggacggga      5820
     gagggccatg aggagggcga tgacgaggag gacgcggcgg cggcgggcaa ggcggccggt      5880
     ggaggccgga agagaggacc cggccggcga cgcggcggcc cgcggcgccg ccgacgccac      5940
     gcccacggnc ggaacgnccg gaggcggcaa cggccggccg gnaagaggcg gcaggagacg      6000
     acgtggcccg cggcgccgcc gacgccacgc ccaaggacgg agcacgagga ggaggagccg      6060
     cggacgaagg ggccgtgggc gcggccggcg ccgaggaggc cggcgccggg ccggcagact      6120
     cgtgcccgga gaagcggccg gagaggccgg cgccgatgcg gtcggcgtcg gacggaggcg      6180
     ncaggaggtc ccggaggcgg actggccgcc ggagctctgc gcgagggtgg cggcggaggc      6240
     ggagaggcgg cgaggacggg ccggaaggcg gcgcgtgatg gcgcaggtgg gagcgatatg      6300
     cttccgggtg cgaggaggtg ccaacggcgt gaaggtaacg aggaaagttt agaaaanaca      6360
     gagaaaaata aantataaaa aaaaaanaag gataaaaaaa aaaataataa aataggaaat      6420
     ttaaaaaaaa aaatatatat aggtaacgan aaaggtatac atgtatanaa aaaaaaaagg      6480
     anaaaaaaaa aaaataaaat aaaaaaaagn tgaaaacaaa aagaaacgaa ctaaagaaaa      6540
     aaaacaagaa aagatttaaa gaaaaagata tttaaaaaaa aaaaanatta aaagtgcggc      6600
     g                                                                      6601
//
ID   Gypsy-7_DBp-LTR repbase;    DNA;    INV; 661 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.05, Created)
DT   15-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DBp_;
KW   Gypsy-7_DBp-I; Gypsy-7_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-661
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 666-666 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 661 BP; 171 A; 155 C; 225 G; 109 T; 1 other;
     tgccttagaa agtgcggcgg ggtgagcggc aaggagcaaa ggggggttgc gacgnagagc        60
     gcagcgggcc ctggaagccc accggtgcac cactaccggc agcagagatc cgtggccggg       120
     ggaaacgagg ggccacggac ggcgacccgc caacgggaaa gtggcgtgat tctggaagca       180
     ggattaacgg caggagcaga atccaggagg attaacgggc gctccagtca gtataaaagg       240
     aggcccattg gagcggctcg ggacgagtct ttttaggaag cttgtagcgt tgagttggag       300
     gaccgcctgt ggagagtccg ccattcaagt gttagagcgt ttctaaaaag gattcggttt       360
     gtttgagttg aaggaccgcc tttggagagt ccgacagcca agcgcaagga gagcgaatag       420
     gacaataagg aaaggatcca ttgctggact ttcctctgaa acgaacccag ggtcgtgtag       480
     tcgagttggt ccattcccga acacggcagg tagccttgca aggaagtgag gaaaggatac       540
     gtctggcgta cgccttaccg actcctgaaa tcgcaaccaa caggcgtggt cctgcgaaac       600
     aaggataggc cgactcggga tcgcacgccc ggtccacgag acgtacagaa caagggagac       660
     a                                                                       661
//
ID   Gypsy-7_DEl-I repbase;    DNA;    INV; 4622 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DEl_;
KW   Gypsy-7_DEl-LTR; Gypsy-7_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4622
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 522-522 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1527-2030] - Reverse transcriptase
CC   Positions [3143-3616] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 99% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..1278
FT                 /product="Gypsy-7_DEl-I_1p"
FT                 /translation="MEMQNKNLIELIKAVQSSTPETTNKKTIVLPKFNADL
FT                 DGADASAWCSTVNIILAENTVKGSALVMALSASLEGSASQWLAQTCYPDIT
FT                 WDEFKELFMQRFGSVETPAAMFLSMLANCPTDGECLSNYASRMMTTLLTKW
FT                 RDMNVEEIAVSVTLAKMAHVDNRLQRLTFTSNMRTRSELQTELKAFTFNKR
FT                 KKTLQEEISSTDVKRPKLSTIKCHFCGKLGHKMMECRAKQQQNHPSSHGTF
FT                 WNNSDRSALAHHKKANVTCFKCGELGHISTHCNKFKMDKHKDTHQMKRVEL
FT                 CEVVEPKGEMVHQGETFVTTFDSGSECSLIKQKISVKLVGKRINNVVMLKG
FT                 IGSGGICSTLQILSNVKINQHCIEVLFHVLDNEYLKNDIVIGREVLYPGFN
FT                 VIISPGKLLDQKL"
FT   CDS           1913..4048
FT                 /product="Gypsy-7_DEl-I_2p"
FT                 /translation="MDDVMVAAATKSEALERLQITLNCLTEAGFSFNVKKC
FT                 SFLKSTVQYLGYEVSAGEIRPNSLKVTALTTLPPPKTVSALRQFIGLASYF
FT                 RQFMQGFSRFMKPLYFLTSEKNDFVWRSEHEEIRQKVISILTQKPVLVIFD
FT                 PNHPIELHTDASSRGYGAILLHKINNKSHVIEYFSKAASPAESRYHSYELE
FT                 TLAVVLSIKHFRHYLLGRNFVVFTDCNSLKASRTKKDLCPRAQRWWAYLQS
FT                 FTFDIQYKEGKRMSHVDFFSRNPPSAELTCKTLEKRVNLAEISDNWLLAEQ
FT                 RQDSEIVNIVNKLKENSLAEDIAKTYELRAGILYRKIQRNGRTRTLSIVPR
FT                 PFRWSVINQVHESIMHLGWEKTLDKAYDYYWFDNMSKYIRKFVDNCITCKM
FT                 SKSSSGKVQVSLHPIPKVNTPWHTIHIDITGKLSGKSDQKEYIIVQVDAFT
FT                 KFVYLTHTLKIDAENCINAVTSAISLFGVPNRIIADQGRCFASTRFSEFCS
FT                 QQKINLHLIATGASRANGQVERIMSTLKNLLTAVETSNRSWQDALGEVQLA
FT                 LNCTVSRVTKASPLELFIGKVARPLGLLPPCDMVEEVDLAEVRTRAGQNIS
FT                 AAATYNKEQFDKNKAKIVGRKVGDFVLLKNEERHQTKLSPKFRGPFQITEL
FT                 LEGDRYMLRSLTNNRKYKYAHDDIRKMPNAQIPVEFESCNKDLNVIETKLL
FT                 KETVIKKLNQKC"
XX
SQ   Sequence 4622 BP; 1590 A; 746 C; 986 G; 1300 T; 0 other;
     tcagaagtgg gatctggctc gctgcctaat gaatcagatg gaccatggcg aattttaatg        60
     gaaatgcaaa ataaaaattt gatcgagctt attaaagccg tacaatcatc gacacctgaa       120
     acaacaaata aaaaaacaat tgtgctacca aaattcaacg cggatcttga tggcgccgac       180
     gcatcggcgt ggtgttctac agttaatata attttggcag aaaataccgt aaaaggcagc       240
     gcgttggtga tggccttgag tgcatcgttg gaaggtagtg cgtcgcagtg gcttgcacaa       300
     acgtgttatc ctgacataac atgggacgaa tttaaagaac tcttcatgca gcgttttggc       360
     agtgtagaaa cgccagcggc tatgtttctg tcaatgttag ctaattgtcc gaccgatggc       420
     gaatgtctct ccaattatgc tagccgtatg atgacgacac ttctcacaaa atggcgtgac       480
     atgaatgtgg aggaaattgc agtttcggtg acgcttgcca agatggctca cgttgataac       540
     agattgcagc gcctaacctt tacttcaaat atgcgcacca gaagtgagtt gcaaaccgag       600
     cttaaagcat tcacgttcaa caaaagaaag aaaactttgc aagaggaaat atcttcaact       660
     gacgtaaagc gtccgaaact ttcaacaatc aagtgccatt tttgtggaaa attaggccac       720
     aaaatgatgg aatgtcgagc taaacagcag caaaatcatc cttcgtctca cggaacattc       780
     tggaacaata gcgacaggag cgcacttgct caccataaaa aagcgaacgt aacctgcttt       840
     aagtgtggtg aacttggcca tatttcaaca cattgcaata agttcaagat ggataaacac       900
     aaggatacac accagatgaa aagagtggag ctatgcgaag tggttgagcc caaaggagag       960
     atggttcatc aaggcgagac gttcgtaaca actttcgatt ctggatcgga atgctcattg      1020
     ataaagcaga agataagtgt caaattagtt ggtaaaagaa ttaacaatgt agtgatgttg      1080
     aagggtattg gtagcggtgg catatgtagc acattacaaa tacttagcaa cgtaaaaatt      1140
     aaccaacact gtattgaagt tttgtttcat gttttggaca atgagtattt gaagaatgat      1200
     attgttattg gtcgagaagt actgtatcct ggatttaatg ttataatatc accaggaaaa      1260
     ttgttagatc aaaaactgta aattattgtt caaacgatga gaaattttgt gaattaaata      1320
     ccgatcttgt gggagaagat agagataaat tacaagatat attggaaaaa tattcaaaag      1380
     cttttattaa tggaattccg tcgtctagag ttagttcggg tgaaatgaaa attaaattag      1440
     tagacccaag aaaaattgtt caaagaagac catataggct tagcccaaat gaaagagaat      1500
     tggtacgaga caagattaag gaattattac aacgtaaaat cataaagcca agttgctcac      1560
     cttacgccag tcccataatg ttggttaaca aaaaagacgg cactcatcgt ttgtgtgttg      1620
     attaccgcga attaaattct aatacagtcg cagatagata tcccttgcca cttatatcag      1680
     atcagatagc cagactttat ggagcaaaat attttacatg tttagacatg gcaagtgggt      1740
     attatcaaat tcccatgcac aaagaatcgg tagagtgtac agcatttgtc acaccagacg      1800
     ggcaatatga atttttggca atgccttttg ggctcagaaa cgcaccttca gtatttcaac      1860
     gcacagtcat gcaagccttg gagaccttgc aaatacgttt gtcgtcgttt atatggatga      1920
     cgtaatggtg gctgctgcaa caaaaagtga ggctttggaa aggttgcaaa ttactcttaa      1980
     ttgtctcacg gaggctggat tctcattcaa tgtaaaaaaa tgttcttttc tcaagtcaac      2040
     agttcaatat ctggggtacg aagtgagtgc aggtgaaatc cgcccgaatt cgcttaaagt      2100
     tacagcgtta actaccttgc cacctcctaa gacagtctct gctttacgcc aatttattgg      2160
     attagcgtct tacttcaggc aatttatgca aggattttcc cgttttatga aaccgttata      2220
     ttttttgact tcggagaaga acgattttgt ttggagatcg gaacatgaag aaattagaca      2280
     aaaagttatt tctatcctta cacaaaagcc agttttagta atttttgatc cgaaccatcc      2340
     gatcgagttg catactgatg caagttctcg gggatacggt gccatcttgt tacacaaaat      2400
     caataacaag tctcatgtca ttgaatattt tagtaaggct gcttctccgg ctgaatcacg      2460
     gtatcattct tatgagttag aaactcttgc tgttgttttg tctataaaac attttcgcca      2520
     ttatctattg ggtagaaatt ttgttgtctt cactgattgt aactcactta aagcatcaag      2580
     aactaaaaag gatctatgtc ccagggcgca aagatggtgg gcgtatttac agtcctttac      2640
     atttgacata caatataaag aaggcaaacg aatgtctcat gttgacttct tttcaagaaa      2700
     tccgccttca gcagaattga cttgcaaaac tctagaaaaa cgagtaaatt tggcggaaat      2760
     atctgacaat tggcttttgg ccgaacagcg tcaagattct gaaatagtta atattgtaaa      2820
     taaattgaaa gaaaattctc ttgctgagga cattgctaaa acttacgaat tgagagcagg      2880
     aatactttat cgaaaaattc agcgaaatgg tagaactcga accttatcaa ttgttcctcg      2940
     accatttaga tggtccgtaa taaatcaagt tcatgagtcc atcatgcatt tgggatggga      3000
     gaagacttta gataaggcct atgactatta ctggttcgat aatatgtcca agtatattcg      3060
     gaagtttgtt gataactgca ttacatgtaa aatgtcaaag tcttcttcgg gtaaagttca      3120
     agtaagtctt catccaatac caaaagtaaa tacaccttgg cacacaattc acatcgacat      3180
     aactggaaag ttgagtggca agtctgatca gaaggaatat atcattgttc aggtggacgc      3240
     tttcactaaa tttgtttatt taacccatac gcttaaaatt gacgctgaaa attgcataaa      3300
     tgctgtcacg tccgctattt ctctgtttgg agtaccaaat cgcataatag cggatcaggg      3360
     cagatgtttc gccagcacta gatttagtga gttttgttca caacaaaaaa ttaatttaca      3420
     tttgattgcg acaggtgcaa gtagggctaa tggtcaagtt gaacgcatta tgagcacctt      3480
     aaagaattta ttaacggccg ttgaaactag caatcgatct tggcaagatg cgttaggaga      3540
     agttcaatta gccttaaact gtacggttag tcgagtgaca aaagcaagcc ccttggaatt      3600
     gtttatcggc aaagttgctc gcccgttggg gttgcttcca ccctgcgata tggtagaaga      3660
     ggtcgacttg gcagaagtaa gaacacgcgc aggtcaaaat atttcagctg cagcaacata      3720
     taacaaggag caatttgata aaaacaaggc taaaattgtt ggacgcaagg ttggagattt      3780
     cgtattgtta aaaaatgaag aaaggcatca gacaaagtta agtccaaagt ttagggggcc      3840
     gtttcaaata actgaactgt tagaggggga taggtatatg ctcaggtctt tgacaaataa      3900
     tagaaaatat aaatatgctc atgatgacat aagaaaaatg ccaaatgctc aaataccagt      3960
     tgaatttgaa agttgtaata aggatttaaa tgtaattgaa acgaaactgt tgaaagagac      4020
     agtaataaaa aagttgaatc agaaatgttg aaagagacag taatgtaagt tgaaaaagac      4080
     actgttgaaa gagacagtaa tgtagtagtt gaaaaagaca ctgttgaaag agacagtact      4140
     gaaataatgt aaaaataaac tgttgaaaga gacagtaata aagaaaatga gttgaatcag      4200
     aaactgttga aagagacagt aatgaagtag ttgaaaagga cactgttgaa agagacagta      4260
     ctgaataatg taaaaataaa ctgttgaaag agacagtact gaaataatgt aaagataaac      4320
     tgttgaaaga gacagtacag ttgtttttaa gagttaataa taaaatctgt tataataatg      4380
     taagcacaag tgcaaaacaa ttgttttgat catggcgtgt ggcgcattag ataatatttt      4440
     gagaaacctg agtggttaat gataatgtaa aaatgagctg tatcaatagg aagatgttat      4500
     ttgtaatgga aataatagat ttagatgaaa aattaaaata tatttgaata aacttttata      4560
     aggtggtaaa gaaagcattt ttggtaaaat tgcacgaggt cgtgtaatgg tcaggatggc      4620
     cg                                                                     4622
//
ID   Gypsy-7_DEl-LTR repbase;    DNA;    INV; 326 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DEl_;
KW   Gypsy-7_DEl-I; Gypsy-7_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-326
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 523-523 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 326 BP; 83 A; 57 C; 93 G; 92 T; 1 other;
     tgtcggcgca cactaagagt gtgtggatgt tggtatgagt gtatgggtat acagtctcta        60
     gaaaattcca gaagactaat ttcatcakta aagtaatatt gcatcagcct ctaacggtgc       120
     tttgtttggt tgtatgcgtg ttgtcgctta agaagtaccg ttttagcggg gcgacagcgt       180
     tgtgtcgctg tcgccgagtg tggttcggtg gtaagcacag aaagaagaag ggatgacgcc       240
     ggtagttgcg ttcaggattt cgtgcgtgtg aaaccgaaac tcgctgcgct attacaatgt       300
     cggaaaataa tatcaatgct gcaaca                                            326
//
ID   Gypsy-7_DEu-I repbase;    DNA;    INV; 6354 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DEu_;
KW   Gypsy-7_DEu-LTR; Gypsy-7_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-6354
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 861-861 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4350-4829] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           683..2044
FT                 /product="Gypsy-7_DEu-I_2p"
FT                 /translation="MSWEYREVKQEIRSDDSDDSEEVGFRPEVRDIDQPEM
FT                 NAEMVQALVANAVSAALVEQEARLRNDFATELGAVRAQVSALSVQAPQVEV
FT                 YQRVVPDPAVRCDVKLDIVKSLPTFSGSHDEYVSWRQAASDAYEVFKRYDG
FT                 SEAHYEAVVIIKNKICGPARALLTSHNTVLNFDAILARLDCTYADKTSLRV
FT                 LRQNLEMVRQGDSDLMAYYDEVERKLTLVTNKIVMSHNMDTAAILNKEVRD
FT                 DALHAFIAGLKRPLKTLVLPAQPKDLPSALALAREAENSIERSAFAASYAK
FT                 AIEDKSHFNEGNRRNNKGQGKQWRGEDKNPHFVPKQNQSKPHEDNHWPKRR
FT                 DPESLDHNTVQPMEVDPSTAKFRQGTNWGKPQSNNNYKRQNSSQRQSGQRR
FT                 QRVNNIAQPQQELTDYDTKAEAEVATIEEDSDTAELNDLLHFLGSVPDCRS
FT                 SSDSWLAEH"
FT   CDS           2113..3705
FT                 /product="Gypsy-7_DEu-I_1p"
FT                 /translation="MPVETPFTVSSIHGSSDVKNKCIMRIFGLHVPFFLLD
FT                 TLSTFDAIIGFDSLTRAGVALDLGNSVIKYANVTEKLKFFDCQNVNFTKID
FT                 DIVVPGSAKADFKKIILKRIKVFSTSNEALTFNTSVIATIRTTSDEPVYSK
FT                 LYPYPMGAADFVNNEIKELLQNGIIRPSRSPYNSPTWVVDKKGTDDNGSKK
FT                 KRLVIDFRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYL
FT                 AEKDREKTSFSVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREEIGKICYV
FT                 YVDDVIIFSENETEHVKHIDTVLKRLLDANMRVAREKTKFFKESVEFLGFI
FT                 VTRGGTRTDPEKVRAIKEFPEPKNLFSLRSFLGLASYYRSFVKNFASIARP
FT                 LTAILKGENGTVSKNMSKKVAVRFNETQRNAFDHLRNILASEDVILTYPDF
FT                 KLPFDLTTDASASGIGAVLSQNKRPITMISRTLKDCELNYATNERELLAIV
FT                 WAIGKLQNYLYGNNGTDLYRPPASHICGIRQKHQR"
XX
SQ   Sequence 6354 BP; 1960 A; 1512 C; 1412 G; 1469 T; 1 other;
     cgaataatta aataattgtc gcccaacgga gtaatattat tactaatatt cgaatttcac        60
     ccctgaagtt gtacaatatg taagtagctg agcgccgaca atagccaagg tctacgcaaa       120
     cacaaatacc agtgcataca attccctatg cccagcatta ggaatttttt acagtaaata       180
     aatagtgact cgattttcga tttctgattc agatttttct gagtgcgtgg ccaaaaaata       240
     aaaaaaacat atatctcata taacgcacat tggtgccaag gcagtcaaca tttgcatgaa       300
     ttaattatgc aaaggaatat tttatttctt tgttaaggtt ggtctctgta cgcatgcaga       360
     ggttgccagt cgtttttctc cttgtatttt gctacaattt tttccactgt gcttgtattt       420
     aatttttaac taaggttatc cagtgtatct gtgctaataa tacacccagt cgaattgacc       480
     tatacttgtt gtcaccgttc tgtattttaa ttttgttttt gagacaaatt aatccaacat       540
     ttttgtgttt taggtgacga tccatttttc cgcaattttt tttctcttcg ccttttatat       600
     caccaagtgg cccgccgaaa ccttttgtct tgagccccaa tcgtcaaata cctcgtatct       660
     acccagcgcc ctttaactgc caatgagttg ggagtatagg gaagtaaagc aggaaattcg       720
     tagcgacgat agcgacgata gcgaagaggt aggatttcgc cccgaagtta gggacataga       780
     tcaaccagaa atgaacgcag aaatggtcca agcgcttgtc gcaaatgcgg tcagcgccgc       840
     tcttgtcgag caggaagcac gcttaagaaa cgattttgcc acagagttag gagcggttag       900
     agcacaggtt agcgcgctgt cagtgcaagc gccgcaggtg gaggtctacc aaagagtagt       960
     accggaccct gcagtaagat gcgatgtcaa gttggacata gtaaaatccc tgccgacgtt      1020
     cagtggaagc cacgacgagt acgtttcgtg gaggcaggct gcatcagatg cttatgaagt      1080
     gttcaaaaga tacgacggca gcgaggcaca ctacgaggcc gttgtcatca ttaaaaacaa      1140
     aatttgcggt cccgctcggg cactactcac gtcccacaac acagtgctaa atttcgatgc      1200
     aattctagcc agactagatt gcacatatgc ggacaaaacg tccctaagag tgctacggca      1260
     aaatttagaa atggttcggc aaggagattc cgaccttatg gcatactatg acgaagtcga      1320
     gaggaaactc acgctcgtca ctaacaaaat agtcatgtca cataacatgg acacagcagc      1380
     aatcctgaat aaggaggtta gggatgatgc ccttcatgca ttcattgcag ggcttaagag      1440
     gccactcaag acactcgtgc taccagcaca acccaaagac cttccatctg cactggcatt      1500
     agcgcgggaa gccgagaaca gcattgaaag aagtgcgttc gcggcatcct acgcgaaagc      1560
     tatagaagac aagtcccatt tcaatgaggg caataggcgc aataataagg gtcagggaaa      1620
     gcagtggaga ggtgaggata agaatccgca ctttgttcct aagcagaacc aaagtaagcc      1680
     tcatgaggac aatcactggc cgaagcgcag agatcccgag tccttagacc acaatacggt      1740
     tcagcccatg gaggtagacc cctcaacggc taagttcaga cagggaacaa actggggaaa      1800
     gcctcaaagt aacaacaatt acaaaaggca gaactcgtcc cagcgtcaat cgggccaaag      1860
     acgccaacgc gtcaacaata tagcccaacc ccaacaggaa ctaacagatt atgacaccaa      1920
     agctgaggct gaggtcgcca ccattgagga agatagcgac acagccgagc ttaacgacct      1980
     cctacatttt ttagggagcg ttcccgactg ccgttcgtcg agcgacagtt ggctggcaga      2040
     acactaaaag ttctcatcga cactggggcg gcaaaaaatt acgtaaagcc cgtaaaggag      2100
     ctaagaaacg taatgccggt tgaaaccccc ttcactgtga gctctattca cggctccagt      2160
     gatgtcaaaa acaagtgtat aatgcgcatt tttggactac acgtcccatt tttcctcttg      2220
     gatacattga gcacgtttga tgctattata ggcttcgatt cgctaacgcg agcaggagta      2280
     gcattggacc taggcaacag cgtaataaaa tacgcaaacg tcactgaaaa gctcaaattt      2340
     ttcgactgtc agaatgtcaa cttcacaaag atcgatgaca tagtggtgcc aggttcggct      2400
     aaagccgact tcaaaaaaat tattctgaaa agaatcaagg tgttttcgac ctctaacgag      2460
     gcgctcacct tcaacacatc ggtcatcgct actattcgaa ctacgagtga cgaacctgtc      2520
     tactccaagt tataccccta ccctatgggg gcagcagact ttgtaaacaa tgaaatcaaa      2580
     gagctgctgc aaaatggcat aatcaggccg tccagatccc catacaatag ccctacctgg      2640
     gtggttgaca aaaaagggac tgatgacaat ggcagcaaga agaagcgatt agtaatcgac      2700
     ttcaggaagc tgaacgagcg aacaatcgcc gaccgctacc ccatgccgag catacccatg      2760
     attctagcga acttggggaa agccaaattc tttaccaccc tagacctgaa gtcagggtac      2820
     caccaaatat acctggctga aaaggaccga gagaagacct cgttctcagt caatggtggg      2880
     aaatacgaat tctgccgatt acccttcggc ctaaaaaatg cagggagcat tttccaaaga      2940
     gccatcgacg atgtgctgcg ggaagaaatc ggcaaaatat gctacgtcta cgtcgacgac      3000
     gttatcatct tttccgagaa tgagacggaa catgtcaagc atattgacac ggtgcttaag      3060
     cgcctactcg atgccaacat gagggtggca cgggaaaaaa ctaagttctt taaagaaagc      3120
     gttgagttcc tagggttcat tgtcaccaga ggaggaacaa gaacagaccc agaaaaagtt      3180
     agggcaataa aggagttccc agaaccaaaa aatctgttta gcctcaggtc cttcctaggc      3240
     ctggcgagct attacaggag ctttgtaaaa aactttgctt ccattgctag acctctgacc      3300
     gccatcctca aaggggaaaa cgggacggtc agcaagaata tgtcgaaaaa agtagctgtc      3360
     aggtttaatg aaacccagcg aaatgcattc gaccaccttc gtaacatttt ggcatcggaa      3420
     gacgtcattt tgacataccc tgattttaaa ctaccgttcg acttaaccac cgacgcctca      3480
     gcgagtggaa taggcgcggt actatcccaa aataaaagac ctattaccat gatttcacgc      3540
     acgctaaaag actgcgagtt gaactacgcc accaacgaaa gagaattgtt ggcgatagtc      3600
     tgggcaatag gcaaactcca aaattaccta tacggtaaca atggtacgga tctttacaga      3660
     ccaccagcct ctcacatatg cggtatccga caaaaacacc aacgctaaga tcaagcgatg      3720
     gaaagcgttc attgatgaga acaacgggaa agtgttttac acacccggaa aacaaaacct      3780
     ggtagctgac gcactatcga ggcaacccct gaattactca gaggctgagg cccagtctga      3840
     cgcggccacg gtgcatagtg agctttcgct ctcatacacc atagagacca cagacaaacc      3900
     tctgaactgc tttagaaacc aaattatttt ggaggaagca ggccaaccgc ttcggcgaga      3960
     tttcatagtc ttcggaaata gaactcgcca tatcattaat tttaataaca aggactcgct      4020
     cgttgaatcc gttaaggaga tcgttaacgc caacgttgtg aacgcaattc attgtgattt      4080
     ccctaccctg gctcgcattc aacatgcctt gaggcaggaa tttcctgcga caaagttctg      4140
     gcattgtaaa acctttgtca gtgacataac caacgctaat gaacaggaat ccacgagcac      4200
     aacgmgccca tagggctgcc caggagaacg caaaacaaat cctccgggat tactacttcc      4260
     cgaacatgtc caaattagct agcgaagtgg tcgcaaattg caaagtctgc aataaggcca      4320
     aatacgaccg ccatcccaag aagcaagaat taggaattac gcctatccca tcatacgttg      4380
     gggaaatgtt gcatatcgac attttttcga ccgacaaaaa aatcttctta acctgcgttg      4440
     ataaattttc caaattcgct gtcgtacagc ccttagcttc tagggcaata gtagatgtac      4500
     gagcacccat tctccaactg gtaaattttt accctaacac caagaccata tactgcgaca      4560
     atgaggcctc ctttaactct gagacaatca catcattgct gcaaaaccaa tacggcatcg      4620
     acgttgtcaa tgcgccaccg ctacacagta gctccaatgg ccaagtagag agatttcaca      4680
     gtaccctggc ggaaattgcc agatgcctca agattgataa aaaaattgag gatactgtgg      4740
     aactaatatt gaggtctact atagaataca acaggtcgct acattcggtt acagagttta      4800
     ggccggtaga ggtcatccac gccagcagcg atgagatgaa gctggcaatt aaagccagga      4860
     ttgacaaggc acaacaatcc aacctagaca gggttaatcc ttcaaggcag aacagagtct      4920
     tcgaagtcgg tgaaagagtg cacctacgca acaacaaaag attagggaac aaattaacac      4980
     cgctttattc agaagagcgt gtagaagcag atctgggaac atctgttctc attaggggga      5040
     gggtggtcca caaggacaac attagatagg cacttcatct gccacagtcg cccttatatt      5100
     aaaacccaat ctttgctata attcccacat tcccacatga ggaagctgct ggaagtggac      5160
     attgaacatg cccagaacct tctggaggaa cttaagatac accatagaat ggccaggagc      5220
     cttgattttt tgggctcagt ccttaaggtc gtggcgggta cacccggcgc ggatgatcta      5280
     aatagagtta tcgaggctaa taatagacag gttataatta acacagagac acagaaacac      5340
     atcaatctac tcacagacac agtaaacaag atcctcaggg agaaaaagga cgggcttgtt      5400
     gattcaggcc atttgttcga aacactacta gccagaaata gaatgttaat atctgaaatc      5460
     caaaattgta tgttcactat cacgcttgct aaaaataata tcatcaatcc tactattttc      5520
     aatcataatg acctaaaggc tattttcgac gaacagctca cggaggtccc aatagttagc      5580
     cttatggatg tatctagatt aagatttttc aaaataatgt tcttgtccac gttatagtcc      5640
     agtatcctag agttaagcgt atttgtaaaa aagtcctgct cttccctgtc gcacactacc      5700
     atactatgct acaaatagaa gacaacatcg tggcggaatg tgatgacgga atcctagcag      5760
     tctccgattg cgcttctacc aacttggcca cattttgcaa aaaggcgtct cacgacaccc      5820
     gcgccaggca attacatgca ggcggggcgg ctacgtgccg gacgcggccc agcaatctgg      5880
     aaccccttac aattgtggac gatggagtaa taatcatcaa cgagaaacta acgaggatta      5940
     ccatcgatga cggtcccaca acaaccatag ttgggaccca cctcatcacc ttcgagagaa      6000
     aggcggtgat caacgactcc gtgtatttga acctcaactc caccgtgaat aagagcccgg      6060
     gtattgcggc ctccccctta attaacatca cgggacacga tcacatactg agtctgccaa      6120
     tgttacagcg gatgaacgag cataacctgc gtttaatgca ggagcttaga gatgacgtgt      6180
     cggctggagg ttccccgagg atttggttcg ccgcaggagt cgccgtcagc ctcgcactat      6240
     gcggcttggt cctgctccaa caacactgca ggcgcaaacg agaggcagcc cagctacaaa      6300
     ggtccatcga cgaattggct gtcaccgagg acggcgtcca atttaagggg ggag            6354
//
ID   Gypsy-7_DEu-LTR repbase;    DNA;    INV; 654 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DEu_;
KW   Gypsy-7_DEu-I; Gypsy-7_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-654
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 862-862 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 654 BP; 159 A; 181 C; 143 G; 171 T; 0 other;
     tagttaacaa ccaactccca gcttaggctg agcaggccaa ttcttattcc ccttattaat        60
     attatattat tattattatt acactttcct ctcatgcatg gtccacccta aattgggtcc       120
     accttgtggg ccctaagctg agccagcaca ttgtaccgtt ccgagccgtg gctccgtttc       180
     gttggctgac agcgatcgta tgacttctgc aaaatgtgaa ggtcagcgtc tgccgcgggc       240
     agccggctat gcatgagctt ttgttagttc ttaagtttag ttttaatttg gatttggaat       300
     agagagcact ggctcgatta taaaactccg gcctcagccg ttacatttat tctatttatt       360
     gaatttggtt atcgtgcctt aagggccata acaacgggga taagtatctc ccaccgtaaa       420
     cttcggacga aggaaggaag tcgaagcgac tacccgactc ctcggtggct gccatcctgg       480
     atggccacca atacccaacc aaccggctct acccctgcca cgaggcaccg ccagccggca       540
     ctaatagtta cataattcgg acgaaggaag gaagtcgaag cgactacccg actcttcagt       600
     ggctgccatc cttggtggtc accaacaccc aaccaaccgg ctctacccct gcca             654
//
ID   Gypsy-7_DFi-I repbase;    DNA;    INV; 6883 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DFi_;
KW   Gypsy-7_DFi-LTR; Gypsy-7_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-6883
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 901-901 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4622-5101] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3323..5338
FT                 /product="Gypsy-7_DFi-I_1p"
FT                 /translation="MWMTSSFSQKQKRTTLGMYVEYLGFIVSQGGLRTSPE
FT                 KVKSIKEFPPPKTLFDLRSFLGLASYYRCFIKNFATIARPLTNILKGENGK
FT                 TSKYQSRKIEINLTEEQREAFDRLRKILASEDVLLSYPDFKRPFDLTTDAS
FT                 GFGLGAVLSQDGRPITMISRALRDSEKNYATNERELLAIVWALKNLRNYLY
FT                 GVKGLQIFTDHQPLTFAVSDKNPNAKLKRWKGIIDDHGAKLVYKPGKENLV
FT                 ADALSRQNINALEDVQESTAATVHSEQSLTYTIDTTENPVNCFRNQIIIED
FT                 GNSFSVDTFILFKSKVRHIIRTPDRENLLNALQDVVNAEVVNAIHCSLPTL
FT                 AFIQHRLVESFPSTSFKYTKSFVQDITDTTEQREIVVTEHNRAHRAAQENV
FT                 KQILRDYFFPKMLRLATEITSNCKTCSMAKYKRHPSKQAVAETPIPSFVGE
FT                 ILHVDIFSTDGTLFLTCVDKFSKFATVQAIASRAIVDIKAPLLHIINFFPK
FT                 TKTVYCDNERSLNSETIKSILLNHFNITISNAPPLHSTSNGQVERFHSTLA
FT                 EIARCLKLEGKLNDTIELILLATNKYNNSIHSVTDRKPIEIVHSKSAEFER
FT                 GISRKIQQAQEKSLDHVNKDRIYKDYQVGEKVFLKANRRLGNKLSPLCSEE
FT                 VIEADLGTTVLIKGRVVHKDNLR"
XX
SQ   Sequence 6883 BP; 2340 A; 1557 C; 1414 G; 1564 T; 8 other;
     ctccgtgagc taacgcwcgc gcgaaatcaa atagtaatta cctttggctt aaccaaactt        60
     gtaatcaaac aaaataataa tttatccttt actctaaaga gtttaggatt aataaataat       120
     ataaaactaa accaaaagac tttttaataa ctgtcgccca acgtaaccga ctcacgcgac       180
     tcgaaacagt gcatttgcaa aagtaatttg caattcggga atactcgcgc gacacagtgc       240
     agtgcgtttg aaagaaaact caaaagttag ttgcaattaa aattgcaaag tggaaatatt       300
     ataataactt gcagattgca aatacaactg caaaaaaata aaatgcgaaa ttgcaaaaat       360
     ctgcaaaaca acttacgaat tgcaaataca acggaaaaaa taaattgcaa aaaataagtt       420
     gcagaaaaac tcgaataata taaaacgcgc aacaaaattc ccttccgcgg gaataatatt       480
     gagcaaaagg gagctgtagg gaaacccctc gcccccctcc gtgggagtaa ctgagcaaca       540
     gggagctgta gggaaacccc tcgcccccct ccgcgggaat aactgagcaa tagggactat       600
     aggcacccct ccatcacccc tccagaagga agaaaacgag aacagcagcg gcggcagcag       660
     cgacggcggc agcagcagca acagcgacaa cgacaaaata aaaataagaa atgtgagtag       720
     gctttttgtt taatatttgc caataaaaaa ttattcggaa agtaaatttt gccggtgctt       780
     gacagcatag aatttttact cgtacggaac ttttacgctt ttgatttata aaataagtat       840
     caagtaaatt ttttctcgtg tcgtcgcgaa tcaataattt aattaaataa aaataaatct       900
     ttcgataaac ccttggttga attctgttag accaatgaaa tcgtttaaat acgggcccat       960
     gtatagaaat aacggggaca tttcatcgga cgaggaaatt cttgcggaat ataggaagct      1020
     tttggaaaca agagtaggaa agggaaaact tgaacaagat caggaaactg aggcaggttg      1080
     ccaaccatct accagtaggg cagtaattat tcgagacagc gttctcaata cagaagctcc      1140
     acaacaagca cttaaaatgc aaccggagca acttgcgaat atggaggccg ccataaacaa      1200
     cgccctcaga gagcagcggg agctatttga taaaaaaaat agctgcggta ataggggagt      1260
     taaactcatt taaaattaaa gataacaccc cacaaattca gactttccaa gaaattgaat      1320
     taagaccaga agtaatatgt aatgaacccc tggacatggt aaagtcagtc ccagaatttg      1380
     acggcaaaca ggaaaattac gtttcctgga ggcaggctgc cacagcagct tataaggtat      1440
     tcgagtcata cgatggcagt agccgtcact atcaggcagt aggaatactt aaaaataaag      1500
     taaggggtcc agcagccgct gtgttatctt cttttaacac agtttttaat tttcatgcca      1560
     tactggcacg cttagatttt acgtacgcgg acaaaactcc ggcgcacgta attaaacaag      1620
     aacttaattt gtcaagacaa ggggaactac ccctgcttaa atattatgat gaaatagagc      1680
     gaaaactgac gctccttact aacaaaacca ttatgacgca cgacgcagcc gcggcggccg      1740
     tcctaaacga gcaacacagg gtagacgctt tgcacgcgtt tatttctggt ctaaaaaaat      1800
     ctctcaaaat agccgttttt ccggcgcaac ctcgggactt accttcagca ttagcgctag      1860
     cgcaagaagc tgaatcaagt catgaaagaa gtgtctttgc ggccactttt gcccgacaca      1920
     atgaagagaa atcgtwtaag ccaaacaacc agcggcaagc gggttggaaa aatccccagg      1980
     cacactacga acagaaccaa aactcggggg ctacgagaaa aaaccctcac ttcgctagga      2040
     ctcagaaggg acacaataac caaaacggtt cttctaggca aagacctcaa aatagtacag      2100
     ggaacattca gggccagacg gtggaaccaa tggatgtcga catctcctcc tccaagttta      2160
     ggcagcccac aacatggcaa aaagggcagt caaagcggtt tcaacaaaaa ataaacttca      2220
     tgccggaaga caaaaccgac gatgaggatt atgactccgc cgcccaagcc tgtgctgtgt      2280
     actgaaatag aggacgacct ggacacagag gactcctgta attttttagg gtaaagtccc      2340
     tcctccctta cataacacgt aaggtggcag gagaggaagt gaaattacta atagatacag      2400
     gtacttctaa aaactatatt tctccaatcc cggggctgaa aggcatcgtg gcagcggaga      2460
     aacccttcac agtgaagtca atccatggct ttactaaaat agataaaaaa tgtttagttt      2520
     cggtgtttaa cgtaaaaaca ccctttttta ttttaaaaaa ccttaaagac tttgacggta      2580
     ttatcgggct cgacttgctt aaacaagcga acgcgaaact cgattttacc ggcaatgtcc      2640
     tgcacacaag taacggaaat gaaaagatcc ggtttactaa agcagaaaac gtcaacttca      2700
     ttcaaattga tgatgaagac gtccccctgg caataaaagc cacatttgat aaaatgattg      2760
     taaaaaatca taaagccttc gccgacccgg acgaagcgct accatttaat ataaacacaa      2820
     ttgccacaat taaaactgac ggggagccgg tatattccaa gtcatacccc gcaccccatg      2880
     ggtgtaaccg aattcgtcaa tgcagaagtt aaacaactcc ttgcggacgg cgtgatcagg      2940
     ccatccaagt ctccgtataa caaccccacc tgggttgtag ataaaaaagg cactgataaa      3000
     aatggggtca agaagaagcg attagttatc gacttcagaa aactaaatca aagaaccgta      3060
     gatgataggt atcccatccc tacaatttcg acaatactgt cgaacatggg cgagtcgcaa      3120
     ttttttacga cactcgacct taaatcaggt ttccaccaga tagaactggc ggaaaaagac      3180
     agggaaaaga cagctttttc cataaacaat ggcaaatatg aattttgtag attgccattc      3240
     gggcttgaaa acgccccaag catcttccag agggcaatcg acgacgtctt aagagaagga      3300
     atttcaaagt tatgctacgt ctatgtggat gacgtcatca ttttctcaaa aacaaaagag      3360
     gaccacatta gggatgtacg ttgagtactt ggggtttata gtgtcacaag gggggctaag      3420
     aacttcacct gaaaaggtaa agtccataaa ggaatttccc ccaccgaaaa ctcttttcga      3480
     cctcaggtcc tttctggggt tagccagcta ctataggtgt tttattaaaa acttcgcgac      3540
     tatcgcaaga cccttaacaa atatcctaaa gggagaaaat gggaaaacca gtaaatacca      3600
     gtcaagaaag attgagatca atttgaccga agagcagaga gaagcgtttg acagactgag      3660
     aaaaatcttg gcgtcagaag acgtattgct ctcatatcca gactttaaga ggccattcga      3720
     tttaacaacg gatgcgtcag gcttcggtct aggggcggta ttatctcagg atggccgccc      3780
     aatcacgatg atatcacgcg ccctacgcga cagcgaaaaa aattacgcaa caaacgagcg      3840
     agagctcctc gccattgttt gggcactaaa aaacctccgg aattacctat acggagtaaa      3900
     gggcttgcag atatttactg atcaccagcc gcttaccttt gccgtctcgg acaaaaaccc      3960
     caacgcaaag ctaaagcgct ggaaggggat cattgacgac catggcgcga aactggttta      4020
     taaaccggga aaagaaaatc tcgtagcaga cgcgctatct cgacagaaca taaacgccct      4080
     agaggacgtg caagaatcaa ctgcagccac cgtacatagc gaacagtcgc taacctacac      4140
     tatcgatacg acagaaaacc cagtaaactg tttcagaaat caaataataa ttgaggatgg      4200
     aaacagtttc tcggtagaca ctttcatatt gtttaagagc aaagtaaggc acataattag      4260
     gacccccgac cgggaaaatc tgctgaacgc gctacaagat gtagtaaacg cggaggtagt      4320
     aaatgcaata cattgttcct taccaacctt ggcatttatc cagcaccggc tggtcgagtc      4380
     gttcccttcc acttcgttca agtacacgaa aagcttcgtg caggacataa cggacacaac      4440
     cgagcagagg gaaatcgttg tgacagagca caaccgggct catagagcag cgcaggaaaa      4500
     tgtgaaacaa atcctaagag actacttttt cccaaaaatg cttcggttag caacggagat      4560
     aacctcgaac tgcaaaactt gttcaatggc aaaatacaaa cgccatccat ctaaacaagc      4620
     ggtagcagaa acacctatac cttcatttgt gggagaaatt ttacacgttg atattttttc      4680
     aacagacgga acccttttcc ttacatgcgt cgataaattc tcgaaattcg ccacagtgca      4740
     ggccatcgca tcaagggcaa ttgtggacat aaaagcccct ttattacaca taataaattt      4800
     ttttccaaaa acaaaaaccg tatattgcga taacgaaaga tccctaaact ccgaaactat      4860
     taaatcaatt cttctgaacc atttcaatat caccatttct aacgccccgc ccctacatag      4920
     cacttcaaat ggccaagtag aaaggtttca cagcaccctg gcagaaatag ctagatgcct      4980
     gaaactggag ggcaaactaa acgatactat tgaattgatc cttttggcaa ccaataaata      5040
     caataattcc attcactcag taactgacag aaaaccaata gaaatagtcc actcaaaatc      5100
     cgcagaattc gaaaggggaa ttagcagaaa aattcaacag gcccaagaaa agtcccttga      5160
     ccatgtaaac aaggatagga tttataaaga ttatcaggtc ggcgaaaagg ttttcctgaa      5220
     ggcaaatagg cgattaggaa acaagctctc accgctctgc tcggaagagg ttattgaagc      5280
     agacctgggg accacggtcc taattaaggg gagggtggtc cataaggaca accttcgcta      5340
     gacttccgac cctttttaca cattttatat tttcattctt atttctattt ttaaaaattt      5400
     ttctattttc taggatagga aaatacattt tattttgggc actaacgact gccggaacgg      5460
     acgcgacaat aagactaaac gactatacga acgcggacta tatcccgata gaggacggtg      5520
     acatcgttgt ctgggaatcg tacggatact tacagcacgc gacaaacatg acgacctacg      5580
     aagactacgc tgaccagacs gagactttga caaggacgtt tacggacgac cacagaacac      5640
     cggttataat gacagacctt caacacattc gcaagttggt agctacccta aaaatccacc      5700
     atagggccgc taggagtatt aacttgattg ggacagcttt aaaggttatt gcaggcacac      5760
     ccgactttaa tgattgggaa caaataaaat tcaaccaaga acaattaatg agagccgatg      5820
     aaggccaaac agaattaaat atcaagtttc aggaacgatt aaacgaactc gcgaacgcga      5880
     tgaatcaagt tcaaaaattc gaaacaaata aagaaactca tcttttagaa atmattttag      5940
     ccaaaaatag aattgtcatt acagatttgg aaaatatcct aatgggctta acccttgcaa      6000
     agttaaatat tgtaagtccg gcaatcctag atagctccga tattggcgaa tttaaaagca      6060
     gacagcctgt taacattagt ttaattgaaa tattagaagt atctagcata agtgtttttc      6120
     aaaattccga tatcctccac tttcttatta aattccctaa ccctaagctt gtctgtaaga      6180
     agataacggt ctatccggtc cagcaccaca ataaaatcct ggacttcgaa agtggaamcc      6240
     tagtcgccga gtgcccwgga cgaaacctca atatcgggta ctgcaagacg acggtcggcg      6300
     ctaccttctg cagagaactc cagaacggca cttgcgccca acaaatagtt tccggagctg      6360
     ttgcgcactg ctccacactc ccaggccatc tggatccagt cactgtggtg gatcacggca      6420
     ctctcatagt gaacgacgcc aacatgacca tgaccgacga ccaaggacgg gaccaaaaaa      6480
     tatccggaac ctacctggta acctattccg acaaagtaag mctaaacgga acctggttca      6540
     ttaatcagct gggaagttcg atgaaaaaac ccgctgtgtc ggccatgacc gtggtcaaca      6600
     tcacgaacca ccaaaaccga ctgagtcttc cgtttctcca cgagctgagt ttgaggaact      6660
     tgcaccacat cgggaccctt agagaagaac tgaccttggg ctcctccttc agctactccc      6720
     tcgccctact cgcctgcttc ctactgtgct ctacmgtttg gctcggctac catctcctaa      6780
     aaaccagacg tcacggcgaa ccaggaagtg acgcggaatt agcaggtcac cgggacggcg      6840
     accacttaaa agagggggcc aaccagttcc cacggagcaa aat                        6883
//
ID   Gypsy-7_DFi-LTR repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DFi_;
KW   Gypsy-7_DFi-I; Gypsy-7_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-297
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 902-902 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 297 BP; 66 A; 88 C; 90 G; 53 T; 0 other;
     tgtcgagttg cagcccgtat ccggtggcca acacgcgcag taagggaact gccgaatcga        60
     cactctgggg ttcatcgccc ggagtccggc cagaaacgcg cacgcatcag gtgaccgtcg       120
     ctggccagat accaagtgct gacccggcgc tttagcggca gcgctgggaa cactcgctca       180
     gcgaatgatc gcgagtggcc gaataccaag ttgacctgca ctttggcggc agcgctgcaa       240
     ccaggtaaag gcctcgagct ggggccggat cagaccttcg aattagtctt aattaca          297
//
ID   Gypsy-7_DHyd-I repbase;    DNA;    INV; 6635 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-6635
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2412-2412 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..1816
FT                 /product="Gypsy-7_DHyd-I_1p"
FT                 /translation="MSDDSDDSLKSLNSNFKALACSSRNTSPQTKTGEMNS
FT                 AQLGDMSALLNAAVTAALTAQRKEFEERLRTITERIESINIAATTKPSIKV
FT                 FEDVKIVPGISCDEPLDAVKSVPEFNGAQEQYVSWRQAAKAAYKLFESYDG
FT                 SSRHYQAVLILRNKIRGQADLTLSSFSTKLNFEAIIERLDFTYADKRPIHL
FT                 IEQEMGTLRQGNLTILQFYDEVEKKLTLLTNKTIMSYDPAIADHMNGKYRA
FT                 DALRIFISGLRRALTDVLFAAKPASMPEALALAQEVESNHDRYAFAANYAR
FT                 SLEERDKQRSNAQYSRQNEQKGGPKPKTPYFKKEQGNKPQAQEPPEAMEVD
FT                 PSSSKFRQATNFQRGQQQSQPAGQASWRNAQNGGQNNLKRSNASERHSDQR
FT                 RQRINCLTQDAPPQADDEYDRVDFAAVAQLEDDEDACSVDTVNFLAVSPCS
FT                 RSSNERSRGPV"
FT   CDS           5228..6634
FT                 /product="Gypsy-7_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="MSTAKLVNYSHSRYIPVTGGTAVVWNETRNLRHSTNL
FT                 TEYDRLVRETAETTKLFPQSHMRKILEADVNHMSTLLVTLGVHHRHARSLD
FT                 VIGRALKVIAGTPDAEDLRQIRLTENELIRENNRQIVINTHTQKQINALTL
FT                 TVNEILKAQKAIQIDTSHLYETLLARNRMLTLEIENLIMAITLATANIINP
FT                 VIINDGDLEVILSKDSTGISVTSILSVSKTKILANNQEIHFIITLPKPKLI
FT                 CKKVLIFPVAHAGVTLQIKENVVADCDGMIVPIVSCEGPSRMSFCEESTSN
FT                 TCAQELHAGKTAHCNTQPNHLAVVTLVDDGILVLNDSPARVTIDDGPENTI
FT                 TGTYLVTFDRFAYVNGTRFTNINGIVKMIPGSASVPALDVVEHQKVLSLPF
FT                 LHQLSEDNLRRIDELQSQVTIGPLITLSSCLMLCGVVSVVAWVIWRKKKKA
FT                 QRESVQEVLRSLKMTEDAHVLGGE"
FT   CDS           1759..4854
FT                 /product="Gypsy-7_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="FFSGVSLLPFIQRTVAGTSLKFLIDTGASKNYLRPNC
FT                 LEELSLAPVQTPFNVKSIHGMEGITHKRTLSIFGCESSFFILPTLSTFDGI
FT                 VGLDLLSKVHATINLKDKIIKYDNGSEQIQFYKCQNVNFTSIEDIEVPLVV
FT                 KKEFVDMIGKTIKVFADPNEKLPFNTSVVGTIRTANNEPVYSKLYPFPVGA
FT                 IDFVNKEVKELLKNGIIRPSRSPYNNPIWVVRKKGVDDSGAEQKRLVIDFR
FT                 KLNEKTIADRYPMPSISMILANLGKAQFFTTLDLKSGYHQITLAEQDREKT
FT                 SFSVNGGKYEFCRLPFGLKNAGSIFQRTIDDVLREHIGKTCYVYVDDVIIF
FT                 SKSELDHVKHIKQVLECLRDANMRVSKEKSHFFKKSVEFLGFVVSSSGTRT
FT                 SQEKVHAIKNFAEPTNLFAVRSFLGLASYYRCFVRDFAAIAKPLTDILKGE
FT                 NGKISKQSSKKVPVKLTDSQFEAFDKLRNVLASEDVILHYPDFKKPFDLTT
FT                 DASSSGIGAVLSQRGRPITMISRTLKDREVNYATNERELLAIVWALGNLRH
FT                 YLYGVNDINIYTDHQPLTFAVSDRNPNSKIKRWKSIIDEHGAKILYKPGKE
FT                 NHVADALSRQNINSLEAEPRSDAGTIHSEQSLSYTIEATEKPVNCFRNQII
FT                 LEEAEHPWHRTFVLFKEKTRHEILFKDWDTLIDQVRDVVNTQVVNAIHCSL
FT                 PVLARIQHALVQAFPSTKFWYCKYRVADVFNKDEQKEIILAEHNRAHRAAQ
FT                 ENVKQVLKDYFFPGMNKVAAEIVVGCRICAKAKYERHPKKQELGPTPIPSY
FT                 AGEMIHIDIYSTAKKQFLTAVDKFSKFAVVQVISSRTIADVKGPLLQLVNL
FT                 FPKIKTIYCDNEASFSSETVRTMLKDNYDIDIVNAPPLHSTSNGQIERFHS
FT                 TLGDMARCLAQQRGITDTVEAILQATVEYNRSFHSVIDRIPIDVLHSAPDE
FT                 LKQEVMSKLLKAQALQLDRNNPSRQNRVFEVGEVVLVRSNRRLGNKLSPLY
FT                 VEEKVEADLGTTVLIKGRVVHKDNLK"
XX
SQ   Sequence 6635 BP; 2183 A; 1433 C; 1495 G; 1524 T; 0 other;
     ggcgcccaac ggtgttgata aaactcacgc ctgaaggaaa aagtgtcgtg tgaaatcgcg        60
     acgcgaataa acatacaaaa taactgaaga atttcgctac ggctggaaaa tatataaaaa       120
     aaaacaaaag aaaataaagt acgaaataca attaaaacaa gtgtcaccaa acggacggtt       180
     tgggcagcgt taacaataag ttcaccaaac ggacagtttg gacagcgaag acggtagaag       240
     cagctggcag ccacgcagga taatattaca ataatattaa aagaaaaaag gaatcatgta       300
     agtggaatca ttgctcagca ttaagtatag aaaaaaaatc ttaattttgt cgccaaaagt       360
     gaaattgccc ttgttgagtt cctcttctcg aaggaataga cgtgttataa aaaaaagagt       420
     gtgtaaaaaa aaaagagtgt gtaaacgtat gagtgatgac agtgacgact cgctaaaatc       480
     actgaattcc aacttcaaag ccttggcttg ctcatcccgc aacactagcc ctcagactaa       540
     aacaggcgaa atgaacagcg ctcaattagg agacatgtcg gccctgctga atgcagcggt       600
     gacagcggcc ttaacggccc aacgtaaaga atttgaggag cgacttagaa cgataacaga       660
     acgcattgag tcaataaata tagcggcaac caccaagcct agcataaaag tcttcgaaga       720
     cgttaaaata gtgcccggta ttagttgtga cgaaccgctc gacgcggtga agtctgtccc       780
     agaattcaac ggcgcacagg aacaatatgt atcttggcgc caagcggcaa aagccgctta       840
     taaactgttt gaaagttatg atgggagctc ccgccactat caggcggtgt taattctaag       900
     aaataaaata agaggacaag cggatctcac cctgtcttca tttagtacca aactgaattt       960
     cgaagccata attgaaagat tggacttcac atatgccgac aagcgtccaa tacacttgat      1020
     cgagcaagaa atgggaaccc tcagacaggg taacttaact attttacaat tctatgacga      1080
     ggtagagaaa aaactgactc tacttacaaa caaaacaatt atgtcttatg atccggccat      1140
     tgccgatcat atgaatggaa agtatagggc agatgcgctc cggattttca tatccggact      1200
     tagaagggcc ttgaccgacg tgttgttcgc ggccaaaccc gcgagtatgc cagaagcact      1260
     cgcgttagcc caagaagtgg aatccaacca cgacagatac gccttcgcgg caaactatgc      1320
     cagaagcctt gaggaaaggg ataaacaaag aagcaatgcc caatactcga gacagaatga      1380
     gcaaaagggc ggcccaaaac cgaaaacacc ttactttaag aaagaacagg gaaataagcc      1440
     ccaggcgcaa gagccacctg aagcaatgga ggtagacccg tcatcgtcta aattcagaca      1500
     ggcaacaaat ttccagcggg ggcaacagca gagccagccg gctggccaag cgtcttggcg      1560
     taatgcccaa aatgggggac agaataacct caagagatct aatgcttcag aaaggcattc      1620
     ggatcaaagg aggcagagaa ttaactgcct gacccaagat gcaccgcccc aggcggatga      1680
     tgaatatgac cgtgttgatt tcgcggctgt agctcagctc gaggacgacg aagatgcatg      1740
     tagcgtcgac actgttaatt ttttagcggt gtctccctgc tcccgttcat ccaacgaacg      1800
     gtcgcgggga ccagtttaaa atttttaata gacacggggg cctcaaaaaa ttaccttcga      1860
     ccaaattgcc tcgaggaact tagtctcgcc cccgtccaaa cacccttcaa cgtaaagtca      1920
     atccacggta tggagggaat cactcacaaa cgcaccctat ccatcttcgg gtgcgaaagc      1980
     tcttttttta tcttgccgac cctgtcaaca ttcgacggaa tagtcggcct agatctactg      2040
     tccaaggtac atgctaccat aaatttgaag gacaagatca taaaatatga caacggttcg      2100
     gaacagattc agttctacaa atgtcagaac gtaaacttca ccagcattga agacatcgaa      2160
     gtccctctag ttgtaaaaaa agagttcgtt gatatgatcg gaaaaaccat caaggttttt      2220
     gccgatccaa atgaaaaatt gccttttaat acatcggtgg tcggaacgat ccgcaccgcg      2280
     aataacgaac ctgtttattc aaaactttac ccatttccag tgggcgcgat tgactttgtc      2340
     aacaaagaag tcaaagagct tctaaaaaac ggcattatac ggccttctcg ctctccttat      2400
     aataacccaa tttgggtcgt acgcaagaaa ggtgttgacg actcaggggc ggaacaaaag      2460
     cggctagtaa tagatttccg caaattaaat gaaaagacga tagcagatag ataccccatg      2520
     ccaagcatct caatgatatt ggcaaacttg ggcaaagccc agttcttcac tactttagat      2580
     ttgaagtcgg gttatcatca aattactctt gcggaacagg accgtgaaaa gacgtccttt      2640
     tccgttaacg gaggaaaata cgagttctgc cgactgccgt tcggcctcaa gaacgctgga      2700
     agtattttcc agagaacaat agatgatgta ctgcgagagc acatcggcaa gacttgttac      2760
     gtctacgtcg atgatgtcat aatcttctct aaatccgaac tcgatcatgt caagcacatt      2820
     aaacaggtcc ttgaatgtct tcgggacgcc aatatgagag tatccaaaga gaagtcacac      2880
     ttctttaaaa aaagtgttga gttcctaggt ttcgtcgtgt ccagtagcgg cactagaacg      2940
     agccaggaaa aggtacacgc aatcaaaaat tttgcagaac caaccaacct tttcgctgtc      3000
     aggtccttct tgggactggc aagctactac agatgcttcg taagggactt cgccgcaatc      3060
     gcgaagccat tgacggacat cttgaaaggg gaaaacggga agattagcaa acagagctcc      3120
     aagaaggtgc ctgtaaagct gaccgactct caatttgagg ccttcgataa actcagaaat      3180
     gtgttggcct cggaagacgt cattctccat tacccagact ttaaaaaacc atttgacctt      3240
     acgacggacg cttcgtcctc gggcatcgga gccgtactgt cccaaagggg gagacctatc      3300
     acgatgatat ctagaaccct taaagataga gaagtcaact acgcgacaaa cgagcgggag      3360
     ttgctggcaa tagtatgggc attaggcaac cttcgccact atttgtacgg tgtaaatgac      3420
     atcaatattt atactgatca ccaacctttg acctttgctg tgtcggacag aaaccctaat      3480
     tcgaaaataa aaaggtggaa gtccattatt gatgaacacg gggcaaagat tttatataag      3540
     ccaggcaaag agaaccatgt ggcggacgcc ctatcaaggc aaaacattaa ttcactcgaa      3600
     gccgaaccgc gatccgacgc cggcactatt cacagtgagc aatcactgtc ctacacaata      3660
     gaggcaactg aaaaacccgt gaattgcttc agaaaccaga taattctgga ggaggcagaa      3720
     cacccgtggc accgcacgtt cgtactcttc aaagagaaaa cacggcatga aattttgttc      3780
     aaagattggg acacattaat cgaccaagtc agggatgtgg taaacacaca agttgtaaat      3840
     gccatacact gtagcttgcc agttctggcg cgcattcagc atgcgcttgt gcaggccttc      3900
     ccttcaacca agttttggta ctgtaagtac cgggttgctg atgtctttaa taaagacgag      3960
     caaaaagaaa taattttggc agagcataat cgcgcccatc gggcagcgca ggagaacgtc      4020
     aagcaagtgc ttaaagatta ttttttccct ggcatgaaca aggtagctgc agaaatcgtt      4080
     gtgggttgtc gaatctgcgc caaggctaaa tatgaacgac accctaaaaa acaggaactc      4140
     ggtcctaccc caattccgtc atatgcggga gagatgatcc atattgatat ttactctact      4200
     gcgaaaaaac aattcttgac agcggtcgat aaattttcta aattcgcggt tgtccaggtc      4260
     ataagctcgc gtacaatcgc ggacgtgaaa gggccattgt tgcagctggt gaacctgttc      4320
     ccaaagatta aaacgatata ttgtgacaat gaggcgtcgt tcagttcaga aactgtacgg      4380
     acaatgctaa aagacaatta tgacattgat atcgtgaatg cgccgccgct ccacagcacg      4440
     tcgaacggcc aaatagagcg cttccacagt accttgggtg atatggcgag gtgcctagcc      4500
     cagcagagag gtataacaga cacggtcgaa gccatattgc aggccaccgt ggagtataat      4560
     aggtcattcc attccgtcat cgacagaatt ccgatcgatg tccttcactc ggcaccagac      4620
     gagttgaaac aggaagtaat gagcaaacta cttaaagctc aggctctgca gttggataga      4680
     aacaaccctt ccaggcagaa tcgtgtgttt gaagtcggtg aggtcgtttt ggtacggtcg      4740
     aataggcggc tgggtaataa actgagcccc ttgtacgttg aggaaaaggt agaagcagat      4800
     ttgggaacaa cggttctcat taaagggagg gtggtccata aggacaacct taagtaaaac      4860
     aaaaaaaaaa aaaaaatata taaaaaaaat taattataaa aaaatataaa ggaaaaataa      4920
     aaaaattaat tataaaaaaa atataaaaga aaaaaaataa ataaataaaa ataaaaataa      4980
     tttaaaaaaa aaataataag caaaaatttt aggtttcaaa aaatattata aaaaaaaaaa      5040
     ttataaaaaa tttttacaaa aaaatttaca aaaaattata aaaaaaatca taaaaaaatt      5100
     aattataaaa aatttttttt tttaaataca aaaggttaag atataaaaat aagttagagc      5160
     gggttgcctc atcgaagatg ttttattgat tcgcaggcgc gttgtggtct tggttgcgtg      5220
     ggctgcgatg tcaacggcta aattggtgaa ttattcccat tcgcgctaca tcccggtgac      5280
     tggtgggacg gctgtggtat ggaatgagac gagaaatctg agacattcta caaacctgac      5340
     ggagtatgac aggctcgtgc gcgagacagc ggagacgaca aaactgttcc cccagtcgca      5400
     catgcgtaag atactggaag ccgacgttaa ccacatgtca acactcttgg tgaccctggg      5460
     cgttcaccat aggcacgcgc ggagtttgga cgtcataggt agggccttga aggtaattgc      5520
     tgggaccccc gacgccgaag acttgcgaca gatacgtttg acagagaacg agttgataag      5580
     ggaaaataac agacaaatag taataaacac tcacacgcaa aaacagatca atgctcttac      5640
     cctcacggta aatgaaattc taaaagctca aaaagcaatt caaattgata cttcacacct      5700
     ttacgagacc cttttggcaa gaaacagaat gttaacttta gaaattgaaa atttgataat      5760
     ggcaatcact ttggctacag caaatataat aaatccagtc atcatcaatg acggcgatct      5820
     agaagtaatc ctgagcaagg attccacagg aattagcgta acaagtattt taagcgtttc      5880
     taagaccaaa atcctagcaa ataatcaaga aattcatttt ataatcactt tacctaaacc      5940
     taagcttatt tgtaagaagg tcctaatttt tcctgtcgca cacgctgggg ttacgctgca      6000
     aatcaaggag aacgtcgtgg ctgactgtga cggcatgatt gttccgatag tatcttgcga      6060
     ggggccgtca aggatgtcct tctgcgagga gtcaacaagc aatacctgcg cacaagagct      6120
     gcacgctggg aaaacggcac attgtaacac ccagccgaat cacctggctg tggtaacttt      6180
     ggttgatgac ggcatacttg tacttaacga cagccccgcc cgagttacca ttgatgacgg      6240
     gccggaaaat acgatcaccg gaacatacct tgtcacgttt gatcgcttcg catacgtaaa      6300
     cggcaccagg ttcactaaca tcaatggcat cgtcaaaatg atccctggtt ctgcgtcggt      6360
     gccggcgctc gatgtcgtcg aacaccagaa ggtgttgagc ctgccgtttc tccatcagtt      6420
     aagtgaagac aacctgagac gcattgacga acttcaatcg caggtgacca ttggaccact      6480
     gattacgctg tccagttgcc tgatgctgtg cggcgtggtg tctgtcgttg cgtgggtcat      6540
     ttggcgcaag aaaaagaagg ctcaacgtga atctgtccaa gaggttctgc gaagtcttaa      6600
     gatgaccgag gacgctcacg ttttaggagg ggagt                                 6635
//
ID   Gypsy-7_DHyd-LTR repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-381
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2421-2421 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 381 BP; 115 A; 90 C; 68 G; 108 T; 0 other;
     agttaacaac aaacattatg cgctgttgca ttatacaatg ttgctataat gctgaccatg        60
     cgcttcaccc ctttcccctc gcgtgctgcc cgtggagcgc gatacttgca cgaggagcaa       120
     gatcagcatt tccgccgtgg ccaccgaccc ccagcatagc tgggaatcat atttctatta       180
     cgtaaacatt cgcgacatag ccttaagcag cgaatgttaa tttttaattt ttcagtttta       240
     agttgaacat tggcagacgc gcacggcgct gtcataataa aaatacttta actcaaataa       300
     tccgaattta attaatataa gcagtcgcac acggcgctgc tataataaag ttaattaaat       360
     tcaaacccta tgaacttaat t                                                 381
//
ID   Gypsy-7_DMel-I repbase;    DNA;    INV; 6435 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DMel-I;
KW   STALKER3_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6435
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1035-1035 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 97% similar to each other. The corresponding LTR region
CC   is STALKER3_LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1110..2378
FT                 /product="Gypsy-7_DMel-I_1p"
FT                 /translation="MSDSQWVHMEWPKIAASINHNKAVFDKSYKCVNKEVP
FT                 IKVETLEIHIKIIIKEYNNICRIVTTIEDRLTETHKKHCHKILRSLNKRLV
FT                 NISIRHNLDIQIPEDLHSLVNINENQLQNLEESKGDIDIEIESDIESLPED
FT                 IEIKNNETKMPDQIEKDREYVRQLSTTIPEFDGKKSSLTRFITALRITDRT
FT                 KGTQEDLAVEIIKSKIIGPILYKVTNETTITGIIDILNSNVKGESAEVVKA
FT                 KLLNIKQKGKTASQYTTEIDNLRKQLETIYIDLGLPAEIADNFATKESIQA
FT                 MIKNCEYEKLRIILEAGNYNTFSDAAGKYIHCSTEMTGSPSSVLYFNNGQH
FT                 NYRGNNNYRGHYRGRGRGNRGGYNTNYNNRGNFRGNYRGNNRGRNNSNRGN
FT                 RQNQNNNYNNNVRTIEAASTSQNATASGN"
FT   CDS           2348..6001
FT                 /product="Gypsy-7_DMel-I_2p"
FT                 /translation="YITKCYSFGKLNKTVHTINLNFNIFIHVHNNNTNTKL
FT                 TFLIDTGADISLIKNSSDNFQDIDQNTITNIFGVGEGSTTSLGLVNIELAT
FT                 NNYIIPHNFHIVNSNFPIPTDGIIGIDFIKKYNCKLDFNTEEDWLILRPDN
FT                 ITCPIYVPITHTIGNNSTLLPARSEVVRLIKLNTSDEQILIPNQEIDTGIF
FT                 IANTITTSKNTVIRIINTTKRNQIINIDKIQFESLNKYEIVKTIDNERNEH
FT                 ILQKLNKNFPPLFKKQLNKLCTNYTDIFGLETESISTNNFYKQKLRLKDDE
FT                 PIYIKNYRIPESQKEEIHRQVNKLIDDKIVEPAVSEYNSPLLLVPKKSLPG
FT                 SATKRWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRARYFSCLDLMSGF
FT                 HQIELDENSRNVTSFSTSNGSYRFTRLPYGLKIAPNSFQRMMTMAFSGLEP
FT                 SQAFLYMDDLIVIGCSENHMIKNLTNVFDLCRKNNLKLHPDKCSFFMHEVT
FT                 FLGHKCTDRGILPDDKKYEVIDKYPVPTDADSARRFIAFCNYYRRFIKNFS
FT                 DYSRHITRLCRKNVKFEWTSECQNAFTYLKQSLIQPTLLQYPDFSKEFCII
FT                 TDASKQACGAVLTQTYDEIQLPVAYASRSFTKGESNKNTTEQELAAIHWAI
FT                 NYFRPYIYGKHFVVKTDHRPLTYLFSMRNPTSKLTRMRLDLEEYEFTVEYL
FT                 KGKDNHVADALSRITIDELKNMQKQVLKVTTRQQSRQNNCAVNEKEQEILP
FT                 RQILENASKPNVYEVINNDDVRKIVTLHITDTLCFFKHGKKIIARIEISDL
FT                 YTNGTLDLGQFFHRLEKEAGILGISQLKMAPSGKIFELISTETFKNMGNEF
FT                 LKQIRVALLKPVTTISDDIEKEAILSTFHNDPIQGGHTGISRTLAKIKRHY
FT                 YWKGMINFISQYIRKCPECQKAKTTKHIKTPLTTTDTPIKAFDKVIIDTVG
FT                 PLPKSDNGHEYIITLICDLTKYLVAIPIANKSASTVAKAIFESFILKYGPM
FT                 KTFITDMGTEYRNTIMNELCKYLKINNITSTAHHHQTLGTVERSHRTLNEY
FT                 LRSYISVDKTDWDVWLNYFVYCFNTTPSMAHNYCPYELVYSKTPNLPKELS
FT                 IKNNIDPIYNIDNYAIESRYRLEMAYKRARIMLENHKRKNKEYYDRKVLDK
FT                 EIIINDKVLLRNETGHKLDNRYLGPYIVVGIEEPNNIIIKDDKNKTQKVHK
FT                 DRLKTFNE"
XX
SQ   Sequence 6435 BP; 2689 A; 1174 C; 993 G; 1577 T; 2 other;
     atggcgaccg tgactcggtc tcgagtctgt ctctgtgttg tgtgtgtcca tgtaggtgcg        60
     agtgacttta aacggtgcta actgtactgc aagtgatgtt cgcgctgcct gctgcatttt       120
     gccggctaca caaaaatgat ttatgctaaa cacgaataaa atacgtttga gtaaaacaag       180
     ataactgtgc acaaaccaga ttgtgtagca gaccacgtgt agcaactgat gagcagacag       240
     caaaacgatc agcaagcacc aaacgcacaa aaacacacaa aacacacaga cacaagcggc       300
     aattgatggc agacgagcca caattgaccg aggcgcaacc cgaggtacag ggggaccagc       360
     caacgctgag agaaacattg gaattaaacc ccgccgatgg accgcgccca ctcacaatag       420
     ctgagtaccg ggcacgtcag gaaaagcgcc aacccaggaa acataaacgc tctggacgta       480
     gagtgaaact attacaacaa cgccgactgg tcaaggaaat gacccagttg gccaaggagg       540
     aatcagcccg gcaacgctac aaagagcgtt tggaaataat agaaaaagaa cttcgccaaa       600
     gtgcgaagac acgcaaacgg gctgcttaaa tgcaaatgcc ccaatttgcc atagatttaa       660
     actaaaccca agccgaggcg ggaaaccgct gcttgaaaaa actaacaaca aaactgtcag       720
     gctattacta acaaatgtgg ttggagaatt tttttaaatt tctaatgaaa tgtaaacttt       780
     gacttgtgag ccaaccacat taaaactatc aaatttccat gtctctggca cttgtatata       840
     tttaatacaa gttgcaaata tttaaagtaa attcattaaa tttcaatatt tactataaaa       900
     acttttcaaa ctttatttcc aataaattga gagattaaac agatttcatt ttttctttat       960
     tgcaaattaa tatttccaaa atgaatcaag attagatcac ccaacagcca atgtagttaa      1020
     tgaagtaaga ataattatat attatattat atgattccga attccacttt agtagaccaa      1080
     atttgttgcg aatataaaag aaacaccaaa tgagtgattc acagtgggta cacatggaat      1140
     ggcccaaaat agcagcgtca ataaaccata ataaagcagt atttgacaaa tcatataaat      1200
     gtgtaaacaa agaagtacct attaaagtag agactctaga aatacacata aagataataa      1260
     taaaagaata caataacata tgtagaatag tcacaactat agaagataga ttaacagaaa      1320
     cacataagaa acattgtcat aaaatactaa gatctctaaa taaaagattg gtcaatatta      1380
     gcatcagaca taatctagat attcaaatac ctgaagattt gcattcattg gttaatataa      1440
     atgaaaacca attacaaaat cttgaggagt ctaaaggtga tatcgacatt gaaattgaaa      1500
     gcgatattga gtcgttacca gaagacattg aaataaaaaa caacgaaacc aaaatgccag      1560
     accaaattga gaaagataga gaatatgttc gacaattgtc gacaacaata ccagaattcg      1620
     atggcaaaaa gtcatcattg acacgcttta taacagcgtt aagaataaca gatagaacaa      1680
     agggaactca ggaagatcta gcagtagaga taataaaatc aaaaataata ggaccaattt      1740
     tatacaaagt aacaaatgaa acaaccatca caggcatcat cgacatacta aatagtaatg      1800
     taaaaggtga atcagctgaa gttgtaaaag caaagttact aaatattaaa cagaaaggga      1860
     aaacagcttc ccaatacacc actgaaattg acaatttgcg taagcaatta gaaacaatat      1920
     atattgactt aggccttcca gccgaaattg cggataactt cgcaactaaa gagtcaatac      1980
     aagctatgat taaaaattgt gaatacgaaa agctacgaat aatactcgaa gctggtaatt      2040
     acaatacatt cagtgatgca gcaggaaaat acatacactg ctccactgaa atgacaggca      2100
     gtcccagtag cgtcctatat ttcaacaatg gacaacataa ctacagggga aataacaact      2160
     atcgcggcca ttaccgaggc cgaggccgag gtaaccgcgg tggttacaat accaattaca      2220
     acaacagagg taatttcaga ggaaactaca gaggaaacaa ccgaggaagg aataattcca      2280
     accgaggtaa tagacaaaat caaaataaca actacaataa caatgtccga acaatcgaag      2340
     ctgctagtac atcacaaaat gctacagctt cgggaaacta aataagacgg ttcacacaat      2400
     caatcttaat ttcaacattt tcatacatgt gcataataat aatacgaata caaaattaac      2460
     atttttaata gatacaggag cagatatttc acttatcaaa aacagctcag ataatttcca      2520
     agacatagac caaaatacaa taacaaacat ttttggagtt ggagaaggtt caacaacctc      2580
     tctaggtcta gtaaacatag aactagcaac aaataattac ataattccac ataatttcca      2640
     catagttaat tctaatttcc caatacccac cgatggaatc atcggaatag actttataaa      2700
     gaaatacaat tgcaaattag attttaatac agaagaagac tggttaattt tgcgaccaga      2760
     caatatcact tgtccaatat acgtaccaat aacacataca ataggcaata actcaacgtt      2820
     attaccagcc cgatccgaag tagtccgact aattaaatta aatacatccg atgaacagat      2880
     cctcattcct aatcaagaaa tagacacagg catctttatt gcaaatacaa taacgactag      2940
     taaaaacaca gtaattcgta taataaacac aaccaaaaga aaccaaataa taaatattga      3000
     taagatacaa tttgaaagtc ttaacaaata tgaaatagta aaaacaatag ataacgaaag      3060
     aaatgaacat attttacaaa aattaaacaa aaatttccca ccattgttta aaaaacaact      3120
     aaataaatta tgcacaaatt acacagacat attcggactt gaaaccgaat ctataagtac      3180
     caataatttt tacaaacaaa aattaagatt gaaagatgat gaaccgatat acatcaaaaa      3240
     ttatagaata ccagaatcac agaaagaaga aatacacaga caagttaaca aattaattga      3300
     tgataaaata gtagagccag ccgtatctga atacaacagc ccattgctac tagtaccgaa      3360
     gaaatcatta ccaggttccg caacaaaacg atggcgactg gtaatcgatt atagacaaat      3420
     taataaaaag ctcttatcag acaaatttcc acttccaaga atagacgata ttcttgatca      3480
     attaggacga gcaagatact tctcgtgcct agacttaatg tcaggattcc accaaataga      3540
     actagatgaa aactcaagaa acgtaacgtc attttcaacg agcaacggct cctatcgctt      3600
     cacgcgatta ccctatggtt taaaaattgc gcccaattca ttccaaagaa tgatgacaat      3660
     ggcattttct ggattagaac cttcacaggc attcctgtat atggatgact taatagtcat      3720
     cggttgttcc gaaaatcata tgatcaaaaa tttgactaac gtctttgacc tatgtaggaa      3780
     aaataaccta aaactacacc cagacaaatg ttcattcttc atgcatgaag tgacttttct      3840
     aggtcataag tgtactgatc gtggtatttt gccagatgat aagaaatacg aagtcattga      3900
     caaatacccc gtccctacgg acgcagacag cgcaagaaga ttcattgcat tttgcaatta      3960
     ttatagacgt ttcatcaaaa atttttctga ctactctcgt cacataacaa ggttatgtag      4020
     aaagaatgta aaattcgagt ggacttcaga atgccaaaat gcattcacat atctcaaaca      4080
     atcattaata caacccacgt tattacaata cccagatttc agcaaagaat tttgcataat      4140
     aacagatgca agtaaacaag cttgcggggc agtattaaca caaacatacg atgagataca      4200
     actaccagta gcatatgcct ctcgcagctt cactaaggga gaaagtaaca aaaacactac      4260
     agagcaagaa ttagcggcaa tacactgggc aattaactac ttcagaccat acatatatgg      4320
     caaacacttt gttgtaaaaa cagatcatag gcctttaaca tatctcttct caatgagaaa      4380
     tcctacttcc aaactcacta gaatgagact tgatttagaa gaatatgagt tcacagtaga      4440
     ataccttaaa ggaaaagata atcatgtagc cgatgcgtta tcaagaataa ccatcgatga      4500
     attaaaaaat atgcaaaaac aagtcttgaa agtcactaca agacaacaga gtagacaaaa      4560
     caactgcgca gtaaatgaaa aagaacaaga aattttgcca aggcaaatac ttgaaaatgc      4620
     ttctaagccc aacgtatatg aagtcatcaa taatgacgat gtacgaaaaa tagtgacctt      4680
     gcatataact gacacattat gtttctttaa acatggtaag aaaattattg caagaattga      4740
     gattagcgac ctatatacta atggaactct cgacttaggt cagttcttcc acaggcttga      4800
     aaaagaagcc ggtatacttg gtatcagcca actcaaaatg gcaccgagcg gaaagatctt      4860
     tgaattaatt tcaactgaaa ctttcaaaaa tatgggcaat gaatttttaa aacaaataag      4920
     agtagcgcta ctcaagccgg tgaccacaat atctgatgat attgaaaaag aagcaatact      4980
     gtctacattt cacaatgatc ctattcaagg aggtcatact ggcatttcaa gaacgctagc      5040
     aaaaatcaaa agacattact attggaaagg gatgataaat ttcatatctc agtacatacg      5100
     taaatgtcca gaatgtcaga aagcaaaaac aacaaagcac ataaagaccc ctttaacaac      5160
     tacagacaca ccaattaaag catttgacaa agtcattatt gacacagttg gaccattacc      5220
     caaatcagac aatggtcatg aatacataat tactttaata tgtgatctga ccaaatacct      5280
     tgttgctatc cccatagcaa acaaaagtgc tagtacagta gccaaggcta tattcgaatc      5340
     attcattctc aaatacggcc cgatgaagac gttcatcacc gatatgggaa cagaatatag      5400
     aaacacaatc atgaacgaac tttgtaaata tttgaaaata aacaatatta catcaacagc      5460
     tcaccaccat caaacacttg gtacggtaga gagaagccac agaacactwa atgaatattt      5520
     acgttcatac atatcagtcg ataaaactga ttgggacgta tggcttaact atttcgtata      5580
     ttgtttcaat actacaccat caatggcaca taactattgt ccatatgaat tagtatacag      5640
     taaaacacct aatttaccta aagaattaag cattaaaaat aacatagacc ctatatacaa      5700
     catagataat tacgcaatag aatctagata cagattagaa atggcataca aaagagccag      5760
     aataatgtta gaaaaccata aacgtaaaaa taaggaatac tacgatagga aagtactaga      5820
     taaggaaata ataattaacg ataaagttct tttaagaaat gaaacaggac ataaactaga      5880
     caatagatat ttaggaccat atatagtagt aggaatagaa gaaccgaaca atataataat      5940
     aaaagacgat aaaaacaaaa ctcaaaaggt tcataaggat agattaaaaa cttttaacga      6000
     ataacgtaat ttttcattaa ataacaaata aatacgaaac atttaaactc tcaattttat      6060
     tcaaaagaaa acacacaaat tattcttatc atcatcatgc aaccgattgg tctgatcaac      6120
     cacatcaaca gaatatggta atgatgacaa taatatacaa aaaaaaaaaa aaaaaataca      6180
     aaaatttcat gaatttacga atttacaaag agacacaata tttttaaatc tacamaatag      6240
     catacaaata caatacatat acacacatat aaataaataa caaatcaaaa tacaatttta      6300
     tatacacaaa aaaaaaaaat aaaatatata aaaaaaaaac aacacaaaaa caaaaatagc      6360
     aaaaacaaaa aaaaaataat tataattttt ttaaaaatga ctacatatat tacgtcattt      6420
     ctttaaaaag ggagg                                                       6435
//
ID   Gypsy-7_DMo-I repbase;    DNA;    INV; 6844 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6844
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6844 BP; 2791 A; 1434 C; 1015 G; 1604 T; 0 other;
     ttttggtatt cgaaaaaata agtcgctttg ctgcgacaaa gtaaacgaaa caaaacgttt        60
     tttaactggc gcccgagcag ggaccagcgc gtacaataga atacccagtt tctaagtgcg       120
     taatcggtat aacaatatag cccaaagtgt tcataagttg ataccgtcgc tggttcaaat       180
     aattctcaca gtgaaactcc cataaattca tttgtggctg tgaaattatt aacaaaatta       240
     agcacgacaa taaaacaatt attaagtgta aaataaaaag cacaaaaatc aaacaattat       300
     tacgtgtaaa atttaaagca aaaaaataaa acaattatta agtgccaaaa caaacagcac       360
     gacaataaaa caattattaa gcgtcaaaca acaaaaaata aataaagcac aacaataact       420
     caattattac gtgccaagca gcaaccgtca aggctacaag acccgctcct agccaaccac       480
     tggatgaagt gaagacctca aaacctgagt aggacatcaa gacacccaaa aaggagactt       540
     ttgaccttcc gcagaggatg accagagctg ctatcttatt gtaagttaaa ataagaaatt       600
     gtaaaaaaaa actaaattaa aaaaaaaaaa aactaaaaaa agtaaacatt ttgtttcaaa       660
     gaatggataa attaagtaat caaaaactga attaaaaaag taaatatttt gtttaaaaga       720
     atagatcaaa tgagtaatca aaaacggaat tagataagta aataacaaaa aaaaaaaatt       780
     ataattacag ttaatcatgg caaacccaag taacttaata agaccatcat tgttgtccga       840
     tgatgcgtca tcctccagat caacaccccc caataacacc caaatgaata tagaccaact       900
     aacacaatta atttcgaaaa ttgtcatcga gactctagca ctaaacaata cagctgaatc       960
     aatcagacca agccctttcg acgcccctga cgtatcaata agacctgaat atagtaatag      1020
     aatatccgaa ttagacaatg ttccagatac agtcaaaggt ttaagagaat tcaatggaaa      1080
     tccagctgag tttagctcct ggaagaagag tgttgacaga ataatggaaa tttatacagg      1140
     acaggaaggc agccctagat atttcggcat ccttcataca ataagaaaca aaataaccgg      1200
     actaggagat acagcaatag aatcttacaa cgtaccactc gactggagtg ccattactaa      1260
     ttgcctgact ctacattacg ctgataagag ggatataata accctagaat atcagatgac      1320
     tggactgact caaggtaatc aatctgttga agaattccat tcagtcgttt ataaacattt      1380
     gtcacttatt cttaacaaag tgggttgagc gattactgac taaagtatat cgtgataagg      1440
     cacttgacac cttcgtaaga ggtctccaag gtgatctccc agacttctag gaattaaaga      1500
     acccaccgac tttccacaag cccttcattt atgcctcaag ttagaaaatc aaaagtatgt      1560
     cgcctcctaa gccaaccaaa aaggccgtat gcaatcattc cgagctcctc caataacaca      1620
     aaataacatt ccacgtcaac caattcaatc ttataggcca aaccccagtt ttcaacaaaa      1680
     taaaataaca ccttatggat agcaattcaa gcaacagcca agttacacct tcccaatagc      1740
     acagcctagt ccgtccggac aacaattctt ttaacagcca aactacagtt atcctgtagc      1800
     accccctcgt ccgtctggac caaaacctta ccctcgtccc gaacccatgg acgtagacaa      1860
     gtccatgcaa acgaagcagg ttaattatat taatcgccca aatttcgata taggaaaacg      1920
     tcctccatac aacacaggac cagaactaaa aaaaaccacg aaattataat atagaaaccg      1980
     ccgaagaaaa cgaaaatcaa actcacatag aagaacaaag acaggcagaa ttggaacaac      2040
     acggtaacgg cccaaatttc gatataggaa aacgtcctcc atacaacaca ggaccaaaac      2100
     taaaaaaaaa acacgaaatt ataatataga aaccgccgaa gaaaacgaaa atcaaactca      2160
     catagaagaa caaagacagg cagaattgga acaatacggt aacgaacact atgcagacgt      2220
     agaaaatcta gccgacaact caccacacga gtacgaatac tcgggtgaag attatcaagt      2280
     tggacattca gacatacatt tttttagaaa aaagtccgcc tcacttccaa actttgaatg      2340
     caagcttgga ggaggaaaga ccttgaaaat tttaattgac actggctcga acaataatta      2400
     tatcaaacca aatttagtaa gaaacccaaa agaaaacatc gaaccattcg atgcaatctc      2460
     tgtaggagat aacataaaaa taacacagca catagaagca aatttgtttg acatcaaaga      2520
     cgtaagaatt aaattctttc tactgccgac tcattcgatg ccattctagg aaacgatagt      2580
     cttaagcagc taaatgcagt aatcttttct aacgacaaca ttatgacttt aaagaacaaa      2640
     tacaatattc ctatcaaaga aatacgaata caagcagtta ataatttaaa tattagagcc      2700
     gaacacatgt ctaaagaaca attcactagc attacaaact taacaaagaa attctcgagc      2760
     ttattttcaa aacccaatga cagattatca tttaccacct gtgtccaagc agaaataaga      2820
     accacctcag acgctccaat ctatacgaaa tattaccctt atcccatgtc tttacaacga      2880
     gaagtagaag cacaaataca aaaactgcta gacgacgaca taattcgacc ctctcgttct      2940
     ccatatatct ctcctgtaat aatagtacca aaaaagttag acgcatctgg cgaaaagaaa      3000
     tatagattag tcattgacta taggaagtta aattccgtaa ccatcgccga tcggtatccc      3060
     ataccagaaa taaacgaggt attagcacag ctaggagaca acgaaatatt ctccgtactt      3120
     gatttgaaaa gcggatttca tcagatccta ttaagagaaa aggacataga gaaaactgcc      3180
     ttctccataa aaaatggaaa atatgagttt aaacgacgcc cctttggttt gaaatcgcgc      3240
     catccatatt tcaaagagcc ttagatgaca tactaaggca acacatagga aaaatctgct      3300
     atgtttacat agacgatata gtcgtgttca gcaaagatgg aaaatcccat ctagatcacc      3360
     tcgaaacaat attccatacg ctccacgaag ctaactcaaa aagcgcaata gacaaatgcg      3420
     aattttttaa aactagagta gaatttttaa gttttgttat ttcagataaa ggcatagaaa      3480
     ctaataaaaa aaaggtagaa gcaattgcca actatccacc accaaacacg cttaaacaac      3540
     ttcggtcatt tctcggccta tccggctact atcgccgttt catcaaagat tatgcaatat      3600
     tagcaaaacc tctcacctcg ttgttacgtg gtgaggacgg cagaatatcg aagcaagctt      3660
     caaataagat atccataaaa ttagattcag ttgccccaga aaagttcatt aatatcagac      3720
     gactaccgat gcatcgaatc acgcaatcgg tgcagttctc tgccaagacg gacaccctat      3780
     ttatttcata tctagaacat tgtgtaaagc agaagaaaat tacgcaacaa atgaaaaaga      3840
     aatgttagct atcgtttggg cactaaagtc catcaagaat tacgtttacg gaaattcaaa      3900
     ggtcaaaata ttcacagacc accaacctct tacacattcc cttagtagtt ggcataggaa      3960
     cgccaaaatt aaaaggtgga aggcaatctt agaagaatac gactaccagc tagtttacaa      4020
     gccaggtaaa gaaaatatag tcgccgatgc attgtccaga acccctaacc aattaaataa      4080
     ccaaataaat tcaatgacag ccaccattca tagtgcagat agttcaagcc atcatttgat      4140
     accaagcctt gaagccccta tcaatgttta taagaatcaa atcataattg caaaggaaaa      4200
     cagagaaact tacgaattta gcattccgtt ccccaccatc catagacact acatcgcgaa      4260
     agaacaattt tcagaaaccg accttatcag cttactaaaa aagtacttaa acccatctgt      4320
     catgaatgga attctcacaa ctgaagatat catggccaag ctacagaata tctacccgtc      4380
     tcacttcaat actttcaaga tacgattttc gcagaacaga attatagatt tagaaaaaga      4440
     ctcggatcaa gaggaagaaa tattaaaaac acacaacaga gcacatagaa acgcatacga      4500
     aaaccaaaaa cagatactac ttcccaagaa tgaaaaccaa aattacaaac atagtaaagc      4560
     aatgtagggt ttgcaaagaa gaaaaatacg atagacgacc aacaaaccca agtctgaagg      4620
     aaacaccgat acccgagtat ccaggccaca tcattcacat agacatttat tctaccgaaa      4680
     agcacctcgt gctcactgca atagacaaat tctcaaagct tgcgcaaggt agaattataa      4740
     aatctaaagc tatagaagat atcagacaac cattacatga aatacttttc tactatggag      4800
     taccaaaatt tgtagtagta gataacgaaa aatcacttaa ttcggcttcc atctctttca      4860
     tgatgaaaga tcagcccaac attgaaattt tcaaagtacc accatataag agttcagtaa      4920
     acggacagat agaacgacta cactccactt tatcagaaat aatgagatgt cttaaaagag      4980
     aaggcaaaga tagaaaaata gaaacaattc cataaattca gtcactaaac aacgcccact      5040
     agatattttc tttggcagaa agattaccac agaccccgaa caattcgaac aagcacgcaa      5100
     aaataacata acaaaactaa aagaacagca gaccaaagac ctaaaatatc acaaccaatc      5160
     tagaaaccct atactaacct acaaaactgg acagataatt tacgtaaaaa tcaacacacg      5220
     actaggatct aaactttcct ccagatacaa aaaagaaata gttaaagaag acaacggcac      5280
     aaccataaaa acagagtcag gaaaaatagt acataaaagc aatattaaaa atgacttttc      5340
     tctacaggat actgggagta atcccaatac aggcacgagt ggaaatgact aattatacaa      5400
     atagtcccat actcaccctt catgacggat taggtaaaat aactaactcc tcgaccagga      5460
     taattcattt gatagacgta ttacaactaa aaaaggcttt ggacaaactt gcaaatcaca      5520
     tagacacaga attaaagtcg tccgatttac atcatactct acatttcgaa gtagaaccgt      5580
     caaaatcaat atttcactct ttattatacg caaataagac cagacacaca agatccataa      5640
     atgctttagg cacagcctgg aaatttgtgg ctggctctcc tgaccacgat gacttagtcg      5700
     ctatagaaga taacctaaat aaactcattc agaatactaa ccaacaaacc atcataaaca      5760
     cacaatttca acaacgatta aataatctta ctcaaattaa caatatttta accaacgcca      5820
     tccaaaaaca ttcgtaccct actaacaatt tagatactaa catacaaata caaatccgtc      5880
     tgattaaaga gaaaataaca aacataaaat acgccataca atgggttaaa ctaaacatag      5940
     taaacagcat cctcttaaat gataaagatt tagacctaat acaaataaat aaagctgaaa      6000
     tagatctaac aatagaagag atgctagagt tagcagacgt atccgtctta cataataata      6060
     ccataatatt atatgttgtc aaaattccta atctagaaaa tataaattat gagaatataa      6120
     ttattagacc tataattaaa gacaatacaa tagtaaactt acaattcaaa gaaattttca      6180
     aatataaaaa cacaatgtta ggattaagaa acagctgtaa aacttatagc aacataaaaa      6240
     tttgtaatca aaaagattta atagatttaa gagaaaacaa ttgtataccc aaattaatgt      6300
     taggaaaaga tgcaaagtgc gactacagca acgcagatca catcgaaagc ttagaggaaa      6360
     tccaagaaga catcatacta cttaacaact tccaaggcag aataaagtgg gaggacactg      6420
     ataaaattgt ccaaggcact ttacttataa aataccacaa ctgctctatc acgatcgatg      6480
     accgaatatt ctccaataca gaagaaacac atatcaaccc caaaaccccg atcatacaaa      6540
     tatcggtatc cgaggccaaa cgcttgcgga tcctcagtct aaaaacatta gataatcttc      6600
     aaataaataa caccaagcta ccaacagcat tggtttatta gcattgcttg taggttttgc      6660
     cataacatag tgttagtctc aaaaaggcga gctaacaaag aagaagtaat cctacaaatc      6720
     gcttccgaaa ttccaaacac cgtcaatcac ccaatcacca acaccgaaca tgttccaaat      6780
     cttcaaatca ccaacatccc gtttttctga cacttgagga caactgtcaa attgaggatg      6840
     gaag                                                                   6844
//
ID   Gypsy-7_DMo-LTR repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   16-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-220
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (16-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 220 BP; 68 A; 57 C; 46 G; 49 T; 0 other;
     agttaacgta agcaaagtca aaagcagttc aacgccctgc aacacgcgct gcgccaaaaa        60
     tgctgaccta cggtctgcat tgcatccgct ccaagcagca aaacaattct taagaattat       120
     ggttacgaga gcaacacgcg caaccgctgg tgcaaccgct ggcgcatccg ctgtagtcga       180
     tatttaagcc acctaataat gtaatagagt tttagtttca                             220
//
ID   Gypsy-7_DPer-I repbase;    DNA;    INV; 8813 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DPer_;
KW   Gypsy-7_DPer-LTR; Gypsy-7_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8813
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1512-1512 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 3' terminus is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1247..2662
FT                 /product="Gypsy-7_DPer-I_1p"
FT                 /translation="MNIRWIASRRKDELQSLAKEFGLGETGTVEDLRSRIT
FT                 AFIARPGHPEAVQARLDELATHFGNIPSPRDHRSPATSPGPESRTKMEDSK
FT                 EGPKLRLIVPELPSTSQGSTHGYRESATETPAAQDEQPRRDAQGPLQGIRP
FT                 EAASKNHEPGPTTTGPLATPSHQTTTEGEQPRLPQGHRVSRPGGGEISYSL
FT                 LADKLRKWGFTFDGHADPLAFIERLEERVESYGGSPEQLPRAISGLLTGKA
FT                 EGWFRTFQMQGQNWTDFRKEFLEFFLPPRYFQRLEDTIRSREQKPKESFRD
FT                 YLIELRLMMQRAQYTREQELERIYENLRPEYQMYTRRQDFRSLTELTQLVS
FT                 AYETARDRDALRSIGTTQNHRAAYIGNGTNPQRGNTHETPGKTEIANRGIG
FT                 QEQEQAIDVQRACRNCGENGHFSGACTNRQKLFCWECGHRGVRTINCCRKP
FT                 ASGNGSGLRPTGTWTEARTQEQEKPTH"
FT   CDS           7307..8812
FT                 /product="Gypsy-7_DPer-I_3p"
FT                 /translation="MDNPRTSDAQPLEAEDGTEGHPRGASPPSSRQPRSTT
FT                 SQPXARHHXPDPQAEPGNTTQHGPSTGAIPRPPRPPRPSRRRARPEGPPSP
FT                 RRATTTTWAWLNDVVRPSTSRNNPSGIITVEAMRSSDSDGEVRAGRAQQEP
FT                 PRRPRRRKHPGQGTGTAVTPRATRRRVEPGHVNLDPNSEGQSSSPVAHKLR
FT                 LRSPPPPPYYLYRMGDPLTPRPNYDSSSDEGFTSPTMEADKHWEPTCQAST
FT                 DEEFLHDRRFGKAGGRPWVKHSVRELNRQLEAERATTCPYSDVSEDEDGPA
FT                 NCQKGTPANIAVDVAPWTTWKDADRTLQLLLAHPRPITPPRPEREIIPAAD
FT                 NDTASGEEVPLLGEDDTTPLRISDGSLGDALPRRLRNLGLQDEHEPPRHVT
FT                 GNELPQLLQELGLEDGPVSPIPRDDGDEEVAWILGGQANPNGPIPDTSWDD
FT                 GWHARLQEWDAQEEAAAPERRVNPDWQPLDHAPMKWLSPVPTDHNAPNPEP
FT                 TSCTAR"
FT   CDS           join(2314..4146,3887..7084)
FT                 /product="Gypsy-7_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="HRDHAEPSSRLYRQWNQPTTRQHTRDTRENRDRQPRN
FT                 RPGARAGDRCTTSLPELRGKRPFQWCVHKPTEAVLLGMWPPRGPDHQLLPE
FT                 TRVGKRVGSPPNWDMDGGAHPGTGETHPLSMTGGRIAALVDINGRAFAATL
FT                 DTGATRSFISERLAKEIGTTENRREVRTRIRLADGTRKEINQAIAVTVRLD
FT                 QQETQVSLLILPTVLDDFILGLDFLCGIRARIHCGRAYLQLKLQQKPAGTI
FT                 PSCTAQPRPRSVTFADSTAIRDQPQTNTPQPTTNHPTAATTKPYQTRSSNN
FT                 PRTTPPQQDTKKATTERTATPMEPTMASSPARTPTPTGQRNKTKTLAETAP
FT                 APLDQSGASSSNQESPQDTAGTRTWQRHSGSTGSIQGQLVEPGVTNRTQQE
FT                 AEDLAETAPAPLDQSRASSSNQESPTGHSRKQGTWQRQLRLHWINPGPARR
FT                 TRSHQQDTAGSEDLGRDSSGSTGSIRASSSNQESPTGHGRKQKTSAETASA
FT                 PLDQPRASSSNRESATGPRNHQNTPAKIAAAPRDHPGPALEPESPTRTATP
FT                 PRTGAPDTNRNANDEAPAQTARASRTARWTNPGPAHRTGTAQQKQDTSARG
FT                 PLQGQLIEPGVTTLRPRGTIQGQLSNRSHQPGRQLRHGQEPRTPTGTRTTK
FT                 LRHRQREPAGQPAGPTQGQLIEPGQHSRNRILQPADHSRASSSNRESPRSN
FT                 PARQTSRKPRTPIPQDEITETPTTDYQLEPLADTEIARERNPFRPADSDDY
FT                 ETAILAAITALELEDLSPWQQDPDPEPPPTPWAGKFLEEELAKFDGLAGVS
FT                 HIAEHTITMRDDRPVKQRYFPKNPAMQKIINAQVDELLRDGRIEPSHSPHS
FT                 APIVLVGKKTGEMRMCVDYRQLNARSVPDAYPLPRINHILERLRHARYIST
FT                 LDLKNGYWQIPVAEGSREATAFTVPGRGLFQWKVMPFGLHSAPATFQRALD
FT                 SVIGPTMEPYAFAYLDDIIVIGATLEEHIDHLREVFRRLREANLRLNRNKC
FT                 SFFRKSLVYLGHVISEQGIHTDPDKVSAVQKLAPPTTLKELRRCIGMASWY
FT                 RRFVPNFATVVQPMTNLLKKDQKWEWTDEQHQAFETLKERLTQAPVLACPD
FT                 FAERFVLQTDASSYGLGAVLTQQIDGAERVIAYASRRLLKAEENYSATEKE
FT                 CLAIVWAIRKLRCFLEGYHFDVITDHLALKWLNSIDNPTGRIARWALELQQ
FT                 YRFDIHYRRGSQNVVADALSRQPVETLQRVDEDRDPCPCPWLQRLRKRIQE
FT                 QPEGHPEFIIESDQIYKRASSRTSEEDPIKWKLCVHKDHRRRVLEECHDHP
FT                 TAGHLGIRKTATRIAQRYYWPGLHRDIARYIQQCTKCQQYKVSQTKPGGKM
FT                 HTRQAQEPLDIVCADFIGPLPRSKHGNTMLLVFFDAFSKWVELVPLRKATT
FT                 ALLETAFRERILSRFGTPRKFVCDNGTQFTSRSFRKFCKLAGMELEYTAPY
FT                 TPQQNPTERANRTIKTMIAQYIDGDQRTWDELLPELSLAINSSTSDTTGFS
FT                 PAFIVLGREPRLPGALYEETTPGLGEVTETPTDKAKRLKEIFAIVQENTQQ
FT                 ASQTQSRTYNLRRREWRPTIGTLVMLRQHHLSKAADNFAAKLAPKYEGPYK
FT                 VIKFISPTIARLQKHPGRQRRTAGLADLKAYHDNEHTLTSEDNEDNDDDDP
FT                 STRKTASS"
XX
SQ   Sequence 8813 BP; 2449 A; 2802 C; 2463 G; 1095 T; 4 other;
     gatggcgccc gagcagggac ccacgagggg agagtcggtg agcataggga acaagtgaaa        60
     aagtgaaaag ggaaccaagc agcagcccac aattaaaagg caagacccac aaaagcaaaa       120
     cagcaaacga tgcttaggac ccacggatca ggaaaagcag caggagaaag gaaaggaaaa       180
     cttcaaatca gtgattagca gccccaaaat cagagtcccg gcgaatagcc agcaccaatc       240
     tttgatccct cgacttatgt acagctgagg ctggtttctc taataccccc ctagcaacag       300
     ccgccggcac gtgtcccaga cgcgccggcg aaaaccacgc ggaaaaccac gcagccagcc       360
     acctacgagg cagaaagaga cggggagaga cgcgaaaaac cacgcggcca gccacctacg       420
     cgacagaaag agacggggag agacgccgaa gacacagcac cgcgtgccgg gagaaaatgg       480
     ccgcggacgg cgcctaaaac tttggcacgc gacggcgaca aagcggcacc agcgacagag       540
     tagccaagca gcagcagcgg cagagcagca aagcagcagc gacagagcag cggcagagcg       600
     acaaagcagc agcgacagag caacgaggca gcggcagagc agagaagcag cagcgacaga       660
     gcagcgaggc agcggcagag cagmgaagca gcagcgacag agcagcgagg cagcggcaga       720
     gcggaagagc agcagcacaa agcggcacgg ccaggcaggg cggagcagga gccgggcagt       780
     gacagagcag cgagacagtg acagagcagc caggcagtga cagagcagcg agacagtgac       840
     cgagcagcca agcagcgaag cagcggtaga acaacggagc agcgagggac agccggcgaa       900
     cgcagaggag cagctacatg gcagaggagc cctcggccac aaagccatgg ccgcggccaa       960
     tataaggcgg agcaggaaca ccggtcgagg cagttgtcac cgggcagtca cacagttacc      1020
     accgagcagt cagacagaac ctttccctgt accgcgccac gtatccttcg acaggatcat      1080
     ccaacccagt gctgtgtatc ctagtacagg atcaccgatc cagtaccgtg ccgcgtgtcc      1140
     ttcgaacagg accccccacc ccagtgccgt gtatcctagt acaggagccc cagaccgtgc      1200
     tgataaggac tcgcaccggt gccacgatta gtttaccagg atcaggatga acatccgctg      1260
     gatagcgtcc cgcaggaagg acgagctgca gagcctagct aaggagtttg gactaggaga      1320
     aactgggact gtagaggacc tacggagccg gatcaccgca ttcatcgcac gcccagggca      1380
     ccccgaagcc gtgcaagcaa ggctggacga attggccacg cactttggga acataccgag      1440
     ccccagggac caccggagtc cagccacgtc acccgggcca gagagccgga cgaagatgga      1500
     agacagcaag gagggaccaa aactgcgatt aatcgtaccc gagctgccca gcacgagcca      1560
     aggatccacc cacggatacc gcgagtcagc aaccgagacg ccggccgctc aggacgagca      1620
     accacgacga gatgcccaag gaccactcca aggaatcaga ccagaggcgg ccagcaagaa      1680
     ccacgagcca ggacccacta ccactggacc cctggccacg cctagccacc agacaaccac      1740
     ggaaggagaa cagccacgtc ttcctcaggg acatcgggtc tcacgccccg gagggggtga      1800
     gatttcatac tcgttactgg cggacaaact ccggaaatgg ggatttactt tcgacggcca      1860
     cgcggaccca ctagcgttca tcgaaaggct cgaggagcga gtggaatcat acggcgggag      1920
     cccagagcag ttgccgcgag ccatctccgg tctccttaca ggtaaggccg aaggatggtt      1980
     ccgaactttt cagatgcagg gacagaattg gacagacttt cggaaagaat tcctagaatt      2040
     cttcctgccc cccagatact tccagcggct ggaagacacc atacgaagtc gggaacagaa      2100
     gcccaaggaa tccttccggg attaccttat cgagttgcgt ctgatgatgc agcgagccca      2160
     gtatactcgg gaacaggaac tcgagcggat ctacgaaaat ctccgtccgg agtatcaaat      2220
     gtacacgcgc agacaagatt tccgatcact cacagaattg acccagctcg tctcggccta      2280
     cgaaaccgcg cgggaccgag acgcactccg tagcatcggg accacgcaga accatcgagc      2340
     cgcctatatc ggcaatggaa ccaacccaca acgaggcaac acacacgaga cacccgggaa      2400
     aaccgagatc gccaaccgag gaatcggcca ggagcaagag caggcgatcg atgtacaacg      2460
     agcctgccgg aactgcgggg aaaacggcca tttcagtggt gcgtgcacaa accgacagaa      2520
     gctgttctgt tgggaatgtg gccaccgagg ggtccggacc atcaactgct gccggaaacc      2580
     cgcgtcggga aacgggtcgg gtctccgccc aactgggaca tggacggagg cgcgcaccca      2640
     ggaacaggag aaacccaccc attaagcatg accggaggaa ggatcgctgc cctggtggac      2700
     atcaatggga gagcatttgc ggccaccctc gacactggag ccacacgatc cttcatcagt      2760
     gagcggctgg cgaaggagat agggacgacc gagaacaggc gagaggtgag gaccaggatc      2820
     cgcctggcag atggaaccag gaaggagatc aaccaagcga tagcagtcac agtgcgcctg      2880
     gatcagcaag aaacacaggt atctcttctt atactcccca cggtattaga cgacttcatc      2940
     ttgggactcg acttcctctg tggcatccgc gcaaggatcc actgcggacg ggcatatcta      3000
     cagctgaagt tgcagcagaa acccgccggg acgataccat catgcaccgc ccagccacgc      3060
     ccacggtctg tcacgtttgc ggactccact gccatccgag accagccgca gaccaacacc      3120
     ccacagccaa ccacgaacca tccaaccgca gcgacaacaa agccctacca gacaagatca      3180
     agcaacaacc ccaggactac gccaccacaa caggacacga agaaagctac gacggaacga      3240
     actgcgacac cgatggaacc aaccatggcc agttccccag cacgaacccc gacaccaaca      3300
     ggacaacgca acaaaacgaa gactttggca gagacagctc cggctccact ggatcaatcc      3360
     ggggccagct cgtcgaacca ggagtcacca caggacacag caggaacaag gacttggcag      3420
     agacactccg gctccactgg atcaatccag ggccagctcg tcgaaccagg agtcaccaac      3480
     aggacacagc aggaagcaga ggacttggca gagacagctc cggctccact ggatcaatcc      3540
     agggccagct cgtcgaacca ggagtcacca acaggacaca gcaggaagca ggggacttgg      3600
     cagagacagc tccggctcca ctggatcaat ccagggccag ctcgtcgaac caggagtcac      3660
     caacaggaca cagcaggaag cgaggacttg ggcagagaca gctccggctc cactggatca      3720
     atcagggcca gctcgtcgaa ccaggagtca ccaacaggac acggcagaaa gcagaaaact      3780
     tcggcagaga cagcctcggc gccgctggac caacccaggg ccagctcatc gaaccgggag      3840
     tcagcaacag gacccaggaa tcaccagaat actccagcaa agatagctgc ggccccgcgg      3900
     gaccatccag ggccagctct cgaaccggag tcaccaacca ggacggcaac tccgccacgg      3960
     acaggagccc cggacaccaa caggaacgcg aacgacgaag ctccggcaca gacagcgaga      4020
     gccagcagga cagcccgctg gaccaaccca gggccagctc atcgaaccgg gacagcacag      4080
     cagaaacagg atacttcagc ccgcggacca ctccagggcc agctcatcga accgggagtc      4140
     accacgtagt aacccagcac gacagacatc acgcaagcca cgaaccccga taccacagga      4200
     cgagatcaca gaaaccccga cgacggacta ccaactggag ccattagccg acaccgagat      4260
     agctcgggaa cgcaacccgt ttcgcccagc cgactcggat gactacgaga ccgcgatctt      4320
     ggccgccatt accgctctgg aactggagga cctatcgccg tggcagcaag acccagaccc      4380
     cgaaccaccc cccacgccgt gggcaggcaa gtttctggaa gaagaactgg cgaaattcga      4440
     cggactagct ggagtctccc acatcgccga acacacgata acaatgcgag acgacaggcc      4500
     cgtgaagcag cgctatttcc cgaagaaccc ggccatgcag aagatcatca acgcgcaggt      4560
     ggacgagctg ctacgggacg gaaggatcga gccatcccac agtccccaca gcgccccaat      4620
     cgtcttggta ggaaagaaga ccggagaaat gcgaatgtgc gtggattatc gccagctaaa      4680
     tgcccgctcg gtgccggacg catatccgct gccacggatt aaccacattc tcgagagact      4740
     tcgccacgct cgctacatct ccacgctgga cctcaaaaac ggatactggc agatcccggt      4800
     ggccgagggc agcagagagg caacagcatt taccgtcccc ggcagaggac tcttccagtg      4860
     gaaggtcatg cctttcggcc tgcactcagc cccagcgacg ttccagcgag ckttggacag      4920
     cgtcatcgga cccaccatgg agccgtacgc gttcgcgtat ctcgacgata tcatcgtcat      4980
     cggagccacg ctagaagaac acatcgacca ccttcgcgag gttttcagga ggctgcgaga      5040
     ggcgaacctc cgactgaaca gaaacaagtg tagtttcttc aggaagagtt tagtctacct      5100
     cggccatgtc atcagcgaac aaggcatcca cacggaccca gacaaggtca gcgcagtcca      5160
     gaaactagca ccgcccacca cactgaaaga actgcgacgc tgcatcggga tggcatcctg      5220
     gtaccgacgt ttcgtcccca acttcgccac ggtggtccag cccatgacca acctgctcaa      5280
     aaaggatcaa aagtgggagt ggacagacga acaacatcag gcattcgaga ctctcaagga      5340
     aagactcacg caagcaccag tcctggcatg ccccgacttc gccgagcgat tcgtactcca      5400
     aacggacgcc agttcgtatg gcctcggagc agtattgaca caacagatcg acggagcaga      5460
     aagagtcatc gcctacgcaa gccgtcgact actcaaggca gaggaaaact actcggccac      5520
     cgagaaagag tgccttgcca tagtctgggc aatccggaag ctccgatgct ttctggaagg      5580
     ataccacttc gatgtaatca cggatcacct cgccttgaag tggttgaact ccatcgataa      5640
     tccaacggga cgcatcgccc gctgggcctt ggagctccag caatatcggt ttgacatcca      5700
     ctaccgccga ggaagccaga acgttgtggc tgacgccctc tcacgacaac cagtagaaac      5760
     cctgcagcga gtggacgaag accgggaccc ttgcccctgc ccctggctgc agaggctccg      5820
     caagcggatc caggaacagc cggaaggaca tccggagttc atcatcgaga gcgaccaaat      5880
     atacaaacga gccagcagca gaaccagcga agaagaccct atcaaatgga aactatgtgt      5940
     ccacaaggac caccgccgac gcgtgctaga agagtgccac gaccatccga cagcaggaca      6000
     cctcggaatc aggaagacag cgacacgaat agcccagagg tactactggc ccggactgca      6060
     ccgagatatc gcccgatata tccagcagtg caccaagtgc cagcagtaca aggtgagtca      6120
     aaccaaacca ggagggaaga tgcacacccg ccaagcccag gaaccactgg acatcgtctg      6180
     cgccgacttc attggaccat tgccccgatc caaacacggc aatactatgt tgctggtgtt      6240
     cttcgacgcc ttcagcaagt gggtggagtt ggtcccactc cgcaaggcca ccaccgcact      6300
     actggagacc gctttccggg aacggatcct aagccgcttc ggaacaccac ggaaattcgt      6360
     atgcgacaac gggacccaat tcacaagtcg ctctttccga aagttctgca aactagcagg      6420
     catggaactg gagtatacgg cgccctatac gccacaacaa aaccccacgg aacgagccaa      6480
     taggacgatc aaaaccatga tcgcccagta catcgatgga gaccagcgga catgggacga      6540
     gctgctgccc gaactcagcc tagccatcaa cagcagcaca tcggacacca caggcttcag      6600
     cccagcattc atcgtactcg gccgggaacc tcggttgcct ggagccttgt acgaagagac      6660
     gaccccagga ctaggcgaag tgacagagac cccaaccgac aaggccaagc gactcaagga      6720
     aatcttcgcc atcgtacagg aaaataccca gcaggcatca cagacgcaga gcaggaccta      6780
     caacctacgt cgacgcgaat ggagacccac gatcgggacg ctcgtgatgc tacgccaaca      6840
     tcacctgtcc aaagcggcgg acaacttcgc tgccaaactg gctcccaaat atgaggggcc      6900
     ttacaaagta attaaattta tttctcccac catagcacga ctccagaagc atccgggaag      6960
     acaacgacga acggccggac tagccgacct caaggcctac cacgacaacg agcacacact      7020
     caccagcgaa gacaacgaag acaacgatga cgacgacccc agcaccagga aaaccgcgag      7080
     ttcatgaggg ccacttatgg tggtgcgctg ccataatgtc ctcgccccgc aaggggcaac      7140
     cgcgtacaca cgcagtaaga tagcttaact ccccttaagg gattagagta agaaatagcc      7200
     agaaactaga aaatgcaccg atcagggaaa cccagggcac agggcacatc agtggcacag      7260
     gtcaggttct aaccaaacaa ggtttcttcc ccccaccaga tccgacatgg acaacccaag      7320
     gacgagcgac gcacagcctc tagaggcaga ggatggcacg gaggggcatc ctaggggtgc      7380
     gtcgccgccc agctcaaggc aaccacggtc cacgaccagc caaccacmag caagacacca      7440
     ckccccggac ccgcaagcag aaccgggcaa cacaacgcag catggcccat cgacaggagc      7500
     cataccacga ccacccaggc cacctaggcc atcccgacgt cgggcccgcc ccgaaggccc      7560
     accgtcgccc cgccgggcga caaccacgac ctgggcatgg ctcaacgacg tcgtccgtcc      7620
     gagcacgtcg cgaaacaatc cgtctgggat catcacagtg gaggcgatgc ggtcatcgga      7680
     ctcagacggg gaggtccgag caggccgggc ccagcaggag ccaccaagac gcccacgccg      7740
     ccgcaagcat ccaggccaag gaacaggcac cgccgtcacc ccacgcgcga ctcgaagacg      7800
     cgtcgagcca ggacacgtca acctggaccc caactccgag gggcagagca gctccccagt      7860
     cgcgcacaaa ctgcggctgc ggtccccacc accaccgccc tattacctgt accgcatggg      7920
     agacccgctg accccacggc cgaactacga cagcagctcc gacgaagggt tcaccagccc      7980
     gacgatggag gccgacaagc actgggagcc gacctgccag gcaagcaccg atgaagagtt      8040
     cttgcacgac cgacgcttcg ggaaagcggg tggccgccca tgggtcaagc actccgtccg      8100
     ggagctaaac cgccaactgg aggccgagcg ggccacgacg tgcccatact cggacgtgag      8160
     cgaggacgaa gatgggccgg ccaactgcca gaagggcact ccagccaaca tcgcggtgga      8220
     cgtggcccct tggaccacct ggaaggacgc cgacaggacc ctgcagctgc tgctcgccca      8280
     tccacggccc atcaccccac ccaggcccga gagggagatc atcccggcgg cggacaacga      8340
     caccgcaagc ggcgaagagg taccgctcct aggagaggac gacaccactc cgctacggat      8400
     cagcgacggc agtctgggcg atgcgctgcc ccgacggctc cggaacctcg gccttcagga      8460
     tgaacacgag ccacccagac acgtaaccgg caatgagctg ccccaactac tccaggaact      8520
     cggcctggag gacggacccg tgtccccgat acccagggat gacggagacg aggaggtagc      8580
     ctggatcctg ggagggcagg cgaacccaaa cggcccgatc ccggacacca gctgggacga      8640
     cgggtggcac gccagactgc aggagtggga cgcgcaggag gaggcggcag ccccggaaag      8700
     aagggtgaat cccgattggc agccgctgga ccacgcacca atgaagtggc tatcgccagt      8760
     tcccaccgac cacaacgccc cgaacccgga accgacgagc tgcacggccc gag             8813
//
ID   Gypsy-7_DPer-LTR repbase;    DNA;    INV; 1657 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DPer_;
KW   Gypsy-7_DPer-LTR; Gypsy-7_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1657
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1513-1513 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5' terminus is uncertain.
XX
SQ   Sequence 1657 BP; 409 A; 513 C; 482 G; 249 T; 4 other;
     aagcagaacc gggcaacacc acgcsagcaa accaaagaag gacagcgacc tgtcattggg        60
     cttggaagag gcagatgcgg gcggactgct cacagcgttc gacgagatgc ccgagctaaa       120
     cgcgctgcag gaggagcagg aatggccawt cgccccagtc gcctggcggg tcagcacgcc       180
     tgaccgtcgc atcccgcaaa gcctgctgga aggcgccagc gctcaggcga acgcggcgcg       240
     tcacgggcgt gtcacgggcg cgtcacgggc acggccggat ccgcagcctg gaataccamg       300
     acggccaacg cttccgcgta tacatcagtg ggaacttggt gcgcatttca ccgcgcccca       360
     ccccgaagta ggaagggagt gtgaaggcat aagcctccac aatacagagt atacacgcac       420
     gaaakagaga acgcaacgaa gagaacggct atacacacac gaaagagaga cgcacacgac       480
     ggccacgcag cgaagagaga acgcaacgaa gagaacggct atacacagag gaaagagagc       540
     gaagcggcag agaagccgcc gatcggcctt acgcccacgc agccgaggaa agggccgacg       600
     gcgaagcaga gaatacagag acgcagccga tcgcccacgc cgccgaggcc gacagccgaa       660
     gctgcgcagc cacgaagcgg cagagaagct ggaaaaagac aaagcagagg cctggcacgg       720
     tccagcgcgg gccaggctcg ggagtgatct ccgagggctg aacaagaccg gttgtgcggc       780
     ggaaaaataa gccgcgaccg cggcgtgtaa aaagaaaaga acaagctgtg agcacgcggt       840
     gtacgagata agccgacgtg acgaggaccc gccgcgggat accaggaccc caaaggaggg       900
     aaacaagggt gagccacctc acgtatgtga gctctggggg ggaacagatc ggtgcagtag       960
     gcaggcatag acagttttac atatccatgc acacatgtgg tttaatataa gtttttttgg      1020
     cgcttatttc cccgctgcag gcgcgggatt ttaagtaggg aaatgatccg aaaataataa      1080
     agacaccaac ctccacccac ctgtctcaga acattcgccc gtaggagtca ctcactcccc      1140
     ctccccctct cttccctttt cccgggaggc ccagcgaagt ggatgtgagt cgtggatcac      1200
     gcggcattca ccaagctggg tttctcctct cctgtacctt ttccccctgg ggacccggcg      1260
     atgctggatg tgagtcgtgg attcacgcgg cattcgcaaa gctgggttcc ctctcctaca      1320
     ccctcgccct ggggacctgg cgacgcagat gtgagtcgtg gatcatgcgg catctgctaa      1380
     gctgggctcc cctctcccat acccttccga tccctgatcc aaacctcttc tcccgccaca      1440
     catgaccccc aacgcacgtc tctgcagctc ccaagcacgg cttcacccac gcctcgtggc      1500
     cgggccaggc ccgaccgtcc cacgatccac cccacgggcg cgctttcgcc acgagcggct      1560
     ctccccttag gtcctcacac aacaaatttt gctgtgggga aggaccgggc cctggacaga      1620
     ctgagaagct gtacctcggc ctgagaactt ccttaca                               1657
//
ID   Gypsy-7_DRh-I repbase;    DNA;    INV; 6679 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DRh_;
KW   Gypsy-7_DRh-LTR; Gypsy-7_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6679
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1563-1563 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2667-3176] - Reverse transcriptase
CC   Positions [4245-4631] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1929..4631
FT                 /product="Gypsy-7_DRh-I_1p"
FT                 /translation="MVARPEEMQEIITTIALADRSSLAVKKLWRTRVELAG
FT                 TRVWMPFLVMPTMLDRVILGMDFLAAMGTRIQCGEATLKVKLSPSVEDPRL
FT                 RPSKVDRMSSEDTNPEILEGRSMTVLGGQESDDKDTRYTEQSEVPAHNRIM
FT                 RQMAPSGELKNDGGDEIRRRDEPGRALEDFPDEIDEAEGGEPMAEEDDLRP
FT                 DQREFITRELALFKELQGVSHVAEHRIIMRDDKPLKQRYYPRNPAMQSVID
FT                 TQVDELLREDAIEPSRSPHSAPIVLVKKKTGEWRMCVDYRQLNAHSVPDAY
FT                 PVPRINHILEKLRQARYISTLDLKHGYWQIPMAKDSRQFTAFTVPGRGLYQ
FT                 WKVMPFGLHSASATFQRALDGVIGADMEPFAFAYLDDIIVIGATEEQHLSN
FT                 LAEVFRRLRRANLKVNPKKCAFFRRRLVYLGHVISAEGVQTDPEKVTAVTN
FT                 LKSPTCLKELRQWLGMASWYRRFVPNFATVVQPMTALLKKGRKWSWGPEQQ
FT                 SALEEVKRRLTTAPVLGCPDFDKTFVLQTDASDVGLGAVLSQDIEGQERVI
FT                 AYASRRLTATEGNYTTTEKECLAIIWAIRKMRCYLEGYRFEVVTDHLALKW
FT                 LNSIESPSGRVARWALELQQFQFDVRYRRGKLNVVADALSRQPCEVLQQMA
FT                 EVETPCKWIQGMQVKIREYPEKFSDYMTENGQLYRNLGHRADDEDYFPWKL
FT                 CVPSSNRVRVLRECHDAPTAGHLGVRKTVSRLSQRYFWPGMFRDAKRYVQR
FT                 CESCQKFKTAQTKAAGKMLTRVTSEPFDVLCADFVGPLPRSKHGNTMLLVF
FT                 HDIFSKWVELIPLRKATAAQVQKAFRERILGRVGIPRKFVCDNGTQFTSRT
FT                 LKEYFSTIGVEVQYTAPYCPQENPTERTNRTVKTMILCYTTRSPLDRR"
XX
SQ   Sequence 6679 BP; 1678 A; 1828 C; 1940 G; 1225 T; 8 other;
     agtttggttc cgcaccaccc gcccgaggtg gcaaccatag agaaaaatac tggaaaatag        60
     ggaaaatacc aaacccctgg tgagaaaggt ccaaaaggat gagagggtca cacggcggtt       120
     tccgggactc tctcggctct gggacttcga agcgatcggt cgcgcacgcg gacaaagaac       180
     aaagaaaaca cgtgtgaaag aaaacgcggt cggtaggaaa taaggttagt gaatcagtgt       240
     aatcggcgca gtgaaacaca gggacgtatt taaacacaag gaataaaact gagtgaactc       300
     gtacgaaaag aaacgtcaag ccggattgtt atgcatgtta tttttacccc gtactccttt       360
     gttccccgag tgattcaggc cattaatgac cgatgaccca attggaagcg gtaaattatt       420
     tgcaccatat acgtacacgt tatcccgatc ttctgagttt catccactaa cctgcctgcg       480
     tagtgaggcg gaagatcccc tcactctcct acttaatccc cctccctcgc gaaatggcag       540
     atccctccgt accctgacta accccccggc ggacgaaaat cctgcctcgc agcccctcct       600
     ctgtctcgtg tcctggaccc ccgacggaga gcccggccac ggagatcctc cgccgcgtat       660
     tgccagccca caccccagga atcgcggccc ttccgactgt caaacttgct tcagccggtc       720
     aaccggacga tagaatccgg ctgcggcctc gcccgaaggt ccagcccgtg ggattcttgg       780
     cccctcaacc acgcggtctc ggccaaccac aatagaatcc ggctgcggcc gcccggggct       840
     cgcagtacag ctcgagagcc gtmactccga accgctagga ggcgacaaag ggttcatgcc       900
     gggagccaag atgacccaag ttggccagag tcaggttcca tatttcgccg gccatgcctc       960
     tcccggaaga ctgacaagct atcgaggagt ccatcccggc acgtcacgag atttcatcgc      1020
     ctcatcactc ggaaatcatg gcgtgtcgaa gccgccagag tcagaagtcc cagtaactat      1080
     cactctkccc cgacatttac tagccgagcg gatgcataaa tggaatctac gattcgacgg      1140
     gcgtctgacc cgctgacctt gatcgccgaa cttgaagaga agatagcaac mtacggaatc      1200
     aaccaggagg aagtaccccg cgccatgtca gagattttgg aaggtagggc agcacgatgg      1260
     ttccgcacga gccgcttaca gacagctacg tgggcagagt ttcgcgccga gttcttaagt      1320
     ttcttcctgc ccccacgtta cttcgagcga ctagaggacg aaatccgagc ccacatccag      1380
     ggagcggatg agacatttaa ggaatatttg gtcgagttga ggaccaagat gcagcaagcc      1440
     ggataccaaa aggaagaaga actctatcgg atctacgaaa atatggcacc ggaatatcgt      1500
     ctgtatataa gacgccacga gttcgcgacg ctggagcaat taacccaaat ggcaacggaa      1560
     tacgaaagtg tgagacagct gacgtcgagt cgcgcaggta ttcccaggac ggtgtgtaga      1620
     tgcggagaag tcggtcactt taggcggggt tgtactaacc cacgtctgaa cttttgttgg      1680
     gactgcggtc gaaggaacac attgaccgtc gactgttgtc gccgagatgc cccgggaaac      1740
     gaacaacgtc ttcgccgaga tgcgggcgca gcggagacga acgcagtaac agcccggcac      1800
     caagaaaccc accattaagg ataagcaacg gcctgatcac cgcttccgtg cagatcggag      1860
     gccgatgggt ggatgccacg gtggatacgg gagcgtcgag gagctttgcg agtgaagggt      1920
     acgctcgtat ggtagcaaga cctgaggaga tgcaggagat catcactacg atagcgttag      1980
     ctgatcggtc aagcctggca gtgaagaagc tatggcgtac tcgcgtggag ttagctggca      2040
     cgcgagtgtg gatgccattc ttggtgatgc caaccatgtt ggatcgcgtg atattaggta      2100
     tggatttctt ggcggcaatg ggaacacgga tacagtgcgg agaagctacc ttaaaggtaa      2160
     aattgagccc gtcggtggaa gacccccgac tgcggccgag taaagtcgat cggatgtcat      2220
     cagaggatac gaacccggaa atactcgaag gaaggagtat gacggttcta gggggtcagg      2280
     aatccgacga taaggacacc aggtatacag agcagagtga ggtccccgcg cacaaccgga      2340
     tcatgcgtca gatggcccca tcaggagaac taaagaacga cggaggagac gagatcagga      2400
     ggcgcgacga accgggaagg gccttggagg actttccgga tgaaatcgac gaagcagagg      2460
     gtggagaacc aatggcggaa gaggatgacc tgagacccga ccagcgggaa ttcatcaccc      2520
     gcgagttggc gcttttcaag gagcttcaag gtgtatcaca cgtggcggag catcggatta      2580
     taatgcgaga cgataaaccc ttgaaacaaa ggtactaccc aaggaatccg gcaatgcaga      2640
     gcgtgatcga cacccaagtg gacgaactac tccgcgaaga cgccatcgaa ccttcgcgga      2700
     gtccgcatag cgcacccata gtgttggtca aaaagaagac gggtgaatgg cgcatgtgtg      2760
     ttgattatag acaattgaac gctcactcag tacccgacgc gtaccccgtc cccaggatca      2820
     accacatcct ggagaagcta cgacaagccc gatacatttc gacgctggac ttaaagcacg      2880
     gttattggca aatacccatg gccaaggaca gccgccaatt cacggccttc accgttccgg      2940
     gcagaggcct ataccagtgg aaggtcatgc ccttcgggct tcactcggcc agcgcaacct      3000
     tccaacgcgc tttggatggc gtgattggtg cggacatgga gccgttcgcc ttcgcctatt      3060
     tggacgatat catcgttata ggcgccacgg aggaacaaca tttgtccaac ctggccgaag      3120
     tcttccgtag gctgcggagg gcgaacctga aggtgaaccc aaagaagtgc gcgttcttca      3180
     ggcggaggtt agtttaccta ggccacgtga ttagtgccga aggagtccaa accgacccgg      3240
     agaaagtgac ggccgttacc aaccttaagt cccctacctg tctcaaggag ctccggcagt      3300
     ggctaggcat ggcatcttgg tatcgccggt tcgtccctaa cttcgcaacc gtggtacaac      3360
     cgatgacggc cctgttgaag aaaggccgga agtggtcgtg gggtcccgaa caacagagtg      3420
     cgctggagga ggtgaaaagg aggttaacca ccgcccccgt gttaggatgt cccgacttcg      3480
     acaagacgtt tgtgttgcaa actgacgcta gcgacgtggg actaggagca gtcttgtcgc      3540
     aagatatcga aggccaggag agggtcatcg cgtacgccag ccgtcgactc acggccacgg      3600
     agggcaatta cacgacgacg gaaaaagagt gtctggccat catatgggcc attaggaaaa      3660
     tgcggtgcta cttggaaggg tatcggttcg aagtggttac cgaccaccta gccctcaaat      3720
     ggttgaactc catcgaaagc ccctccggtc gggtagccag atgggcgctg gagttgcaac      3780
     agttccagtt cgacgtgcgg taccgccgag gcaaattgaa cgtggtggcg gacgcgttat      3840
     cccggcaacc ctgtgaagtc ttgcaacaga tggccgaggt ggagacaccc tgtaaatgga      3900
     tccaaggtat gcaagttaag ataagagagt accccgagaa gttctcagac tacatgacgg      3960
     aaaatggaca actataccgg aatttgggac acagagcgga tgacgaggac tacttcccgt      4020
     ggaaactgtg cgtccctagt tcaaataggg tccgagtcct ccgagaatgc cacgacgcgc      4080
     ccacggctgg acatctgggc gtccgaaaaa ccgtttctcg actatctcag aggtatttct      4140
     ggcccggcat gtttagagac gcgaagcgtt acgtccagcg ctgcgagtcg tgccagaagt      4200
     ttaaaaccgc ccagacgaag gcggcaggca aaatgctaac ccgcgtaaca agcgaaccgt      4260
     ttgacgttct atgcgcagac tttgtcggcc cgctaccccg gtcgaagcac ggaaacacca      4320
     tgctcctcgt atttcatgac atcttttcca aatgggtgga gttgatcccg ttacggaaag      4380
     ctaccgccgc ccaggttcag aaggcattcc gggaacggat actgggtcgg gtcggcatcc      4440
     ctcggaagtt cgtctgcgat aatggtactc aattcaccag tcgcactttg aaagagtact      4500
     tcagcacgat aggggtagag gtccaatata ctgccccata ctgtccacaa gagaacccta      4560
     ccgagaggac gaatcggact gtcaagacga tgatactatg ttatacgacg aggtcacccc      4620
     tggatcggcg gtgatatcta aggaccccgc aggaaaagcg ctccaactca gaggaatctt      4680
     cgacatcgtc agatccaacc tccaacgtgc ttcccaagag caagcacgtc attacaacct      4740
     tcgacgccgt gagtggagac cgaagctcgg tgacaaagtg tgggtacgcc aacatcccct      4800
     ctcgaaggcg gccgaaggtt tcgccgccaa attggccccc aaatatgacg gtccctacac      4860
     cgtaacgagg ttcacatccc ctaaccttgt tctgttgcga cgccccggag aaagacgttc      4920
     acgctccgcc aacatcagcc agctgaaacc ctattactcg aggacttcga gaatgccgcc      4980
     gcagaagaag atgacgaggc tacccagggg ccgacacgag aggttaagta ggatacaagg      5040
     tcatacggta atttctaagc tgaattgtac taacacaccc tatgttatta tctaagtatt      5100
     ctaagtcgag gtttcactgc accgataggt agggagctta atcaataagg gtctcgtatc      5160
     tataagttta gtctccgctt tcagatggaa gaagtcatcg agttgtcgga tggttccgac      5220
     gatactgaat gttttcatca cgacctttcc gatcgcgacg agtgggtcgc ggaagggtac      5280
     agcggaggag attcggacgc atcggaagac gaagagggag agatcgcaga ggaccaggtt      5340
     accgacgatg gccaaggtga agaagacgca cacggcggcg ctgagtcttc cgacgaccag      5400
     gagcctgggg gtacgggtag gtckcggttt gcgggcatgt ggagccctaa acccggcgag      5460
     acacgacgac ccgatcgacc ttcggcagcg ttcaacgtcg aggacgattc cagcaacgcg      5520
     agcgacagcg acgaacgcga cgagcctcag gattacacga gaggtcgtcg ctcacagggg      5580
     ccagggtatt acgcaccgcg agaagacgac gaacagccgt ggaccaggcg agatcctcga      5640
     ggcggtcacc cgcgatacac tgagtcccac caacgtccct ccatcgaaca ctcgtgtcat      5700
     cgtacggtcg aagaccaagt cagccgctgg gaagggacat gtckcgatga tgcgcatcga      5760
     aggtcaagtc ggtcgtgtta aggcacctgg atacgcgccg aaggtcctta cgtggacgaa      5820
     cctccgtcac caccgccgcc ccccgcctgg attgggacgc gacgttccgt ccccaggcag      5880
     aggtcccgac gtccccccgt cggccgccgt gctcgccgaa gaagacccgt acgcaggaaa      5940
     ctcagacatc cccgacttgc tggcagcgtt cgccgaagca gacccgtgcc cagtctgtcc      6000
     agacgtcgcc aacttaccga caacgctcgc cgagggagac tcgcgtccag gcggcccaga      6060
     catccccggt tggactacgg cgctcaccac gggagaccgg agggcaggag gcgaagcgtt      6120
     gccgcgtggg ttcaccacgt gaagtacttt gcggagtgcg agttggcgac cgacagcgag      6180
     gacggggtag aggatcgccc cctgttccgt cgggtattcc agaactcgga ggcagcagag      6240
     gccagtacgg cagacccgga cccgacggac gaggccgagg aggacgacgt tgcggtccaa      6300
     tcgacgtcac accaatcccc gatctgcgcm ccgccaggmg caccgctgac cgaatgggag      6360
     gacggagtcc tcgatcaggt cttgaccgag atccagggga ccggttggga cgggtcgttc      6420
     atggaggagt tgacctcatc catagcaact ccggaggtac ctckagacga gttagccccg      6480
     ttaccagaag gctggaccgg gacgggcgaa ctgcggcgac tgccggcatc ggccattcgt      6540
     ctgatcgccg agagggcggc cgaacaagcc ggacgaggac accgcgttcg cttcgccgtt      6600
     aaggggatgg attggcatta cgtcgtcacc gtgaagagcg acgggcggct catcatcagc      6660
     ccccggtagg aaagggggg                                                   6679
//
ID   Gypsy-7_DRh-LTR repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DRh_;
KW   Gypsy-7_DRh-I; Gypsy-7_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-167
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1564-1564 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 167 BP; 59 A; 24 C; 31 G; 53 T; 0 other;
     tgtgacgatc ccgcctgacg gctaggccgc cacaatatat atttaagcaa tagttatcta        60
     agtttcacat tattatcatt agtatgtaag agatataaaa tgaagcatta tgatttagta       120
     atggaagcga tcttatagat ttttgggtat aaaaccaaaa taggtca                     167
//
ID   Gypsy-7_DSe-I repbase;    DNA;    INV; 4377 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DSe_;
KW   Gypsy-7_DSe-LTR; Gypsy-7_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4377
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1465-1465 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [2909-3382] - Integrase core
CC   'AATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..1197
FT                 /product="Gypsy-7_DSe-I_1p"
FT                 /translation="MEDQLRILMEHQNQSFLELAKTLQASVREPAQNGVVT
FT                 LPKFNADIPGADATQWCSTVDIIVAEKPLEGSALILALTKSLEGSASQWLS
FT                 EVCYAGVTWLEFKQLFQQRYANAETPDAMFLQLLNSRPGNRECLAIYASRM
FT                 VTSLVCKWKGLDTERIAVSVILGHLANFDRRLQRIAYTAEIKNRRDLQAEL
FT                 QVFAFDRRTHHSGDEESGGKRAKFAPLKCHLCGKMGHKMIDCRNRKQSAGM
FT                 SRQDHRGSQSFQQHSKGSITCYRCQEQGHIASQCPKNMASGGAGFRNEKRA
FT                 ELCVVDEPKTSMLLRGENFPIIFDSGAECSLIKESFAKNISGKIINNVVSL
FT                 KGIGNANVCSTIQIDNNIVEILLRFFYTGNASDSRKFGRNENSID"
FT   CDS           1076..3526
FT                 /product="Gypsy-7_DSe-I_2p"
FT                 /translation="MQMFAVQFKSITTLLKSYSDSFIQGTPQTRVNSGEMK
FT                 IRLIDETKTVQRRPYRLSPSERDVVRNKVQELLDCRVIRPSSSPFASPVLL
FT                 VKKKNGSARLCVDYRELNSNTVADKFPLPLISDQIARLRGAKFFTCLDMAS
FT                 GYYQVPMHPNSVEYTAFVTPDGQYEFLSMPFGLKNAPSVFQRAVIKALSEV
FT                 AYSYVIVYMDDIMIVAPTKETALERLKIVLDILSKAGFSFNVEKCFFLRTS
FT                 VQYLGFEVRAGEISPNTRKVESLNALPPPRSVTTLRQFIGLASYFRQFVPG
FT                 FSQLMKPLYFLTSEKNKFEWNIEHEEIRRKIIHILTNKPVLIIFDPQYPIE
FT                 LHTDASAIGYGAILLHRIENKPYVVEYYSKTTSVCESKYTSYELETLAVVN
FT                 AVKHFRHYLHGRKFVIFTDCNSLKSSRNKIELLPRVYRWWAYLQTFDFDIQ
FT                 YREGKRMAHADFFSRNPLPPENSPEYAKVVEKRIDLTEVSEDWICAEQQKD
FT                 QDIVEIVAKLNNDECPFDLAKTYDLRAGVLYRIIQRNGKTLCLPVVPRGFR
FT                 WSVINQVHESIMHLGWEKTLDKVYDYYWFEGMAKYVRRFVENCITCRVSKS
FT                 SSGKLQMELHPIPKVNIPWHTVHIDISGKLSGKSDRKEYVIVQIDAFTKYV
FT                 YLYHTFTLSAESCVMALKSAISLFGVPIRIVADQGRSFTGAKFVEFCSSQK
FT                 IKLHLIATGASRGNGQVERVMSTLKNLLTAVEMSSRSWQEALGDVQLAINC
FT                 TANKITKASPLELLMGKVARPLGLVPIHEPETEIDLTKIRTQALENIERSG
FT                 KYEKERFDKGRAKIV"
XX
SQ   Sequence 4377 BP; 1449 A; 713 C; 1041 G; 1173 T; 1 other;
     tcagaagtgg gattgtgcct tcgtctgcac accatggagg accaactgcg catcttgatg        60
     gagcaccaaa accaaagttt cttggaattg gcaaaaacac tgcaagcgtc tgtgcgagaa       120
     ccggcacaaa atggcgtcgt cacattgcca aagtttaacg ccgacattcc aggcgccgac       180
     gctactcaat ggtgctctac ggttgatatt attgtggctg aaaaacctct ggaaggcagt       240
     gcattaatat tggccttaac aaaatcgctg gaaggaagtg cgtcccaatg gctgtcagaa       300
     gtgtgctatg ctggtgtgac atggttggaa tttaagcagt tattccaaca acgctatgca       360
     aatgcagaga cgccagacgc catgttttta cagttactga acagtcgccc aggcaaccgt       420
     gaatgccttg ccatatatgc tagtcgcatg gtgacgtcac tcgtttgcaa atggaagggc       480
     ttggataccg agaggattgc tgtgtctgtg attttgggac atttagccaa ctttgatcgc       540
     cgattacaaa gaattgccta cactgccgag atcaagaata gacgcgactt acaggctgag       600
     ttgcaggtct tcgcttttga caggcgcaca catcattctg gagatgagga atctggagga       660
     aagcgagcta agttcgcgcc cttgaagtgc catctttgtg gtaaaatggg gcacaagatg       720
     attgactgcc gaaacaggaa gcagagcgct ggcatgtcga gacaggatca ccgaggaagc       780
     caatcatttc agcagcattc taaaggcagt ataacttgct atcgctgcca ggagcaaggt       840
     catatagctt cacaatgccc caaaaatatg gcaagtggtg gagctggatt tcggaacgag       900
     aagagagctg agctgtgcgt ggtggatgaa ccaaagacaa gtatgctgct acgaggtgag       960
     aactttccaa ttatctttga ctctggagca gagtgctctt tgattaaaga gagttttgct      1020
     aaaaacataa gcggtaaaat aataaataac gtagtaagcc tgaaaggtat tggaaatgca      1080
     aatgtttgca gtacaattca aatcgataac aacattgttg aaatcctact cagattcttt      1140
     tatacaggga acgcctcaga ctcgcgtaaa ttcgggagaa atgaaaattc gattgattga      1200
     tgagacaaaa acggtacaga gaagaccata tagattgagc cccagtgaga gagatgtggt      1260
     tcgaaacaaa gttcaagaat tattagattg cagagttatc agaccgagta gctccccttt      1320
     tgcgagccct gttctattgg tgaagaagaa gaatggatca gctaggcttt gtgtggatta      1380
     tagagaattg aattcgaata cagtagctga caagtttccg ttgcctttaa tatctgatca      1440
     gatagccagg ttgcgtggtg caaagttctt tacctgcttg gacatggcaa gtggctatta      1500
     tcaggttcct atgcatccga actctgtcga gtacacggca tttgtcaccc ctgacggcca      1560
     atatgagttc ctgtcgatgc catttggact taagaatgcg ccatcagtct ttcaaagagc      1620
     agttataaag gcattaagcg aggtcgctta ttcgtatgtc attgtgtata tggacgacat      1680
     aatgattgta gctccaacca aggaaacggc actcgaaagg ttaaagattg ttttggatat      1740
     tttatcaaag gcaggatttt cattcaatgt tgaaaaatgc ttctttctga ggacttctgt      1800
     ccaatattta ggattcgaag tacgagcagg tgagattagt ccaaatactc gcaaagtaga      1860
     atctttgaat gccttgccac ctcctaggtc agtgacaaca ttgagacagt tcattgggtt      1920
     agcatcgtac tttcgtcagt ttgttccagg attttcacag ctaatgaagc ctttatattt      1980
     tctcacctca gagaaaaata aatttgagtg gaatatagaa catgaggaaa ttcgtagaaa      2040
     aattattcac attcttacta ataaaccagt tttgattatc tttgacccgc aatatccaat      2100
     agagttacac accgatgcga gtgcaatcgg atatggtgct atactcttgc acagaattga      2160
     aaataaaccg tatgtagtgg aatactacag taagacaaca agtgtatgcg aatctaaata      2220
     tacttcgtat gagttggaaa ctcttgcggt ggtaaatgca gtcaagcatt tccggcacta      2280
     cttacatggc agaaagtttg taatattcac tgattgtaat tctttaaaat catcacgaaa      2340
     taagattgag ttgttgccta gagtctatcg ctggtgggct tatttacaga cattcgattt      2400
     tgacatacag tatagagaag gcaagcgtat ggctcatgct gatttctttt ccagaaatcc      2460
     acttcctccg gaaaattccc ctgaatatgc gaaagttgtt gaaaagcgaa tcgacttaac      2520
     tgaagtatct gaggattgga tttgtgcaga gcaacagaaa gatcaagata tcgtagaaat      2580
     cgttgccaag ctgaacaatg atgaatgtcc attcgatttg gctaagacat atgatttgag      2640
     agctggagtt ttgtatagaa tcatacaaag aaatggcaag accctatgtt tgccagtggt      2700
     gcctcgtgga tttagatggt cagttattaa ccaagtacat gaatccataa tgcatctggg      2760
     ctgggagaaa acacttgaca aggtttacga ttactattgg tttgagggca tggccaaata      2820
     cgttcgaaga tttgttgaaa attgtataac ctgccgagtg tccaaatcat cttctggaaa      2880
     attacaaatg gaattacatc ctattcccaa agtaaacatt ccgtggcata ctgttcacat      2940
     agacatatca ggcaagctta gtggtaaaag cgatcgtaaa gaatatgtta ttgtacagat      3000
     agatgcattt accaagtatg tttatctcta ccacacgttc acattaagtg cagaaagctg      3060
     tgtaatggcg ttaaaatcag caatttcgtt gttcggagtc cctattcgta ttgtggctga      3120
     tcagggaaga agttttacag gtgctaagtt cgttgaattt tgctcttcac aaaagataaa      3180
     attacatttg atagcaacag gagcaagccg aggtaatggc caggttgaga gagttatgag      3240
     taccttgaaa aatttattaa cagctgttga aatgagttct cgatcgtggc aagaggcatt      3300
     gggtgacgtg caattagcta ttaattgtac tgctaataag ataacaaaag cgagtccatt      3360
     agaattatta atgggaaagg ttgctcgacc tttaggcctt gttcccattc atgaaccaga      3420
     aactgaaata gatctgacta agataagaac ccaagcttta gagaatatag aaagatcagg      3480
     aaagtatgag aaggaaagat ttgataaagg cagagctaag atagtaaawt tcagtgttgg      3540
     agattttgtg ttgctaaata atagtgagag aaaccagact aagttagaag ctaaatatag      3600
     aggaccattt gagattattt aggtattgga taatgacaga tatactttaa agagtttgaa      3660
     aagtaatagg cggtataagt atgcgcatga gagattaaga agattgccag atgggcaggt      3720
     gccaagcgag ctggagatcg atgttagccc gccaggtgaa actgttgaaa gagacagtag      3780
     tgatgttgat gaaagagatg atatgtaaac tgttgaaaga gacagtaaga gaagttgttg      3840
     aaagaaacgg tatggaaact gttgaaagag acagtaagtg aagttgttga aagatatgaa      3900
     atggaaactg ttgaaagaga cagttggcgg aaggtgtatg gaagtacaca gtttatcgat      3960
     ggctacgtgg cggtacctga ccctgagtgg taaaatgata atgttgttag aaaatgagaa      4020
     aagaaaatga gagaagaaaa taagagacga aaatgagaaa agaaaatgag agaagaaaat      4080
     aagagacgag acgaaaatga gaaaagaaaa tgagaaaata gaataagtaa agacgagatg      4140
     aaagaaggaa aattaataaa attttgattt gaaaagaaat tgcttaaatg aacgaaatag      4200
     tcaagaaatt gaagaattct aagaaatgaa taatgaatgt taaagattaa gttaaaaaaa      4260
     attcaaagtc gttaatgaat aagattgtca cattaagagt acaactgaag gttgaaggtt      4320
     gatttattgc aggtagctag ctcatacacg agggcgtgta atttatcaga atggccg         4377
//
ID   Gypsy-7_DSe-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DSe_;
KW   Gypsy-7_DSe-I; Gypsy-7_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-258
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1466-1466 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 258 BP; 81 A; 49 C; 69 G; 59 T; 0 other;
     tgtcggagaa gggaatgata ttttgaaata ggcgccctat cgatggtcaa ctgttcacga        60
     gacttatcga taggacgagt tgtaatcgat tgtgagattt caataacatt gagatcgagt       120
     gtggccctga tagtgtgtgg ccgtgcgcgt ctatcgagaa gagaacgagg aaaagcacac       180
     acacgcagcg gcaagaatca ataagaggaa aactacaggg acacgcttca caatttggat       240
     taaatctacg ctccgtca                                                     258
//
ID   Gypsy-7_DSer-I repbase;    DNA;    INV; 5824 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5824
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1983-1983 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1256..5755
FT                 /product="Gypsy-7_DSer-I_1p"
FT                 /note="RING_UBox, gag, retropepsin, reverse
FT                 transcriptase, ribonuclease H and integrase."
FT                 /translation="MDPEASGSTKCMLCGKALSPDQVSRGSCGHIFHKECA
FT                 DALVKKQGSCPGCEAKGNSAKAKTPAPKKQAMSSIDAEAISDIVAQQLKAV
FT                 QXNLLTKLTEQMGQIIQANFAAQMQEPPRSNESVHNFGTQSVAGDIEIPDR
FT                 PTSAFSSSDLSSRPDKVGQIISSWKLRFNGSPDGLSVDKFLYRVEALTRQT
FT                 LNSRFDLICGNASVLFEGQAREFYWRFHKESDSSRWDLLTEALRKQFRDTR
FT                 TDVDLRETIRDRKQRERESFDSFYDAVVQITDCLTVPMPEKDLVETLRRNL
FT                 RPEIRHELLNVSIDSVQKLRDICRRREGFLEDVKRTYGYQKPVPFRKQVSE
FT                 LVQEYLSDDAAEFSDVEQVAEVDALALVCWNCRKEGHRYHDCEERRKIFCY
FT                 GCGTPNSYKPSCHKCQKKREVEHTTPTTAVCSPKQASEFRCQSAMNTSLEE
FT                 AATDATVFWHQQIQHRQLPDLSINPVRTHSRNAKRMRDFWRAAETINAIRY
FT                 KNMDRRPYAEVQILGRLVLGLLDTGASMSAVGGNLANQIIKQRMAFKRVAT
FT                 TVNTADGQQQKVVGRLKTPIQYEGKIHELDLYIIPSLSQDLYLGIDFWTNF
FT                 ELLPPEMSIDELSSDAHVLSDIQQSKLQSVIKQFPSFAVLGLGKTSILSHS
FT                 IDVGDAKPVKQRHFPVSPAVEKLLYEEVNRMIQLGVIEESDSPWSSPVVLV
FT                 QKPGKVRLCLDSRKVNAVTKKDAYPLPQIDAILSRLPKANFISSLDLKDAY
FT                 WQIPLDPQSRDKTAFTIPGKPLYQYKVMPFGLTNASQTMTRLMDKVIPAEL
FT                 RNEVFVYLDDLLIVSDSFEGHLKVLETVSSRIRAAGLTLNVEKSKFCMKSV
FT                 KYLGHIVGEGVVRTDPEKISAMTDFPLPRSLKALRRFLGMVGWYRKFISNF
FT                 AAVSAPLTDLLKPRQKFVMTPEGEEAFTKLKEMLCSAPVLRSPDFSKPFYI
FT                 HCDASNSGVGGVLVQKAESGEECPIAFVSKKLNKAQKSYTVSEKECLAAII
FT                 CIKRFRAYVEGHDFTVITDHASLKWLMSQTDLNSRLARWALKLQGFTFKIE
FT                 HRSGKLNVVPDALSRVNEEEIAAVDASHGLLVDLESAHFLDPDYIELIKKV
FT                 EANASSLPDLKVADGFLYRKTEHLTGDPMHDSFCWKLWIPAGLVPEVLKKS
FT                 HDDPLASHGGVHKTLERLRRYYYWPRLVKDVKEYIQACDICKTTKAPNSTL
FT                 RPPMGVAPESARPFQKLYVDFLGPYPRSRSGNVAIFIVLDHYSKFVFLKAV
FT                 KKLTADVVVKYMQDDLFHTFGVPETIVSDNGSQFKSELFQKLLREYKISHT
FT                 FTAVYSPQANASERVNRSVIAAIRSYVRSDQKDWDEQLSSICCALRSAVHS
FT                 SLGTSPYYMIFGQHFISSGATYKVLRALSLLEDRSLAFTKEDSLELARSKA
FT                 SEIMKNQFEKNERRYNLRSKEVSFSKGQEVYRRNFKQSNFAAGYNAKLGPS
FT                 FIKARVRDKIGQVYYDLEDLQGRYVGRFHAKDIKQ"
XX
SQ   Sequence 5824 BP; 1685 A; 1110 C; 1410 G; 1616 T; 3 other;
     tttataaata atatgtttat ctttttataa ttttaataaa attggcgccc aacgttaagg        60
     ccacatacat ataggattat catttatgat tatcagttca taattttaat aaaattggcc       120
     aacgtgaagg ccacatatat gttcaatgtg actcacacag acacacacac aaataattgt       180
     taaacttttc gttcagccat ggggtgggct aagactaggt tgtgtttaca ggtagtcacc       240
     aagccacggt tgctccagct ggtaggaagg catgtcaatt cccactcaca gttgttcgga       300
     agcataggaa cacggaagaa gatgactcag gtttgaagca tctagccggc cgcagacgac       360
     aacagaggaa tagggagtag acaaactcgt gtatactcta caccgtgtag cccgagtcgg       420
     tgcatatcac acgcatagga ctagcaggtg catttgcttt cagaagcgat cacttgacca       480
     cggatgatag gcataggcaa agggacacaa caaatttcat aggggcttat taattttgtt       540
     attatttgca taggacttac tgagcgttta tctttcagaa gagaaactca ggccacggat       600
     attagcagaa ggcatagacc caacattgac ggaagagtag aagcgtgggc cgatcggata       660
     gcagacagcg aagctttcgt ctgaccacgg caacacgctc tgcagtgttg ttgttattgc       720
     caaatagcga taaacaacgc tcgtcataat ttttttctcg attctctttt gtgcttaccg       780
     aaaccttttg tttgtatata agtgcatttt aattacaagc attgctatgc ttgctggcca       840
     gactttttgt attgatttgt tgattgtcga tttttgattt gatttgattt tcgttgcgaa       900
     acaaaatttt tattgcttgt gtttatattt ttctatattt caggtgttat cattgtattt       960
     cctaaatatt attattatta ttaattacat ttaatgaagg gatttgaagt gaggcttcga      1020
     tctatataga ttccatagcg atcttgaggt tcggaacttg gataaattct tcattattta      1080
     tgttcaattc tttttctgta ttaaatttta gactaatttc tagctkgttt ataaktatta      1140
     tatagggata taggatctta ggaatttcta ttaggcatat tttgaatccg gttcgttttg      1200
     acttgtagtc gtccagaatt tattactttg ctttggtttt atttaaaagt tagccatgga      1260
     tccagaggct tcgggatcca cgaaatgcat gctctgcgga aaggctttgt caccagatca      1320
     agtaagccgt gggagttgtg ggcatatatt ccacaaggaa tgcgcagacg cgttggtcaa      1380
     gaagcagggc agttgtcctg gttgcgaggc caagggaaat tccgccaagg cgaagacccc      1440
     agctccgaaa aagcaagcga tgagcagcat tgatgctgaa gcgatcagcg acattgtagc      1500
     gcaacagcta aaggcagtgc agcawaattt gctaaccaag cttacggaac agatgggcca      1560
     aataattcag gcaaatttcg cggcgcagat gcaggagccg ccaaggtcaa acgaatctgt      1620
     ccataacttc ggaactcaat cagtagcagg ggatattgaa atcccagaca ggcccacgtc      1680
     agctttttct agctccgatt taagtagtcg tccggataag gttggacaaa ttattagcag      1740
     ttggaagctg cgattcaacg ggtctccaga cggattgagc gtagataaat ttttgtatcg      1800
     agtggaggcg ctaactcgac aaaccctcaa ctcgcgtttt gatttaattt gcggaaatgc      1860
     cagcgtactg ttcgagggac aagcgcgaga gttttattgg cgatttcata aagaatccga      1920
     tagttccagg tgggatttgc ttaccgaagc tttacgaaag cagttccgag atacgcgtac      1980
     ggatgtggat ctgagagaga caattcgtga cagaaagcag agagagaggg aaagctttga      2040
     ctctttttac gatgctgtgg tacagatcac agactgccta acagttccca tgccagagaa      2100
     agatctggta gaaactcttc gccggaactt gcggccggaa ataaggcacg agctgttgaa      2160
     cgtgagcata gactcagtcc aaaagcttcg agatatctgc cggcgtaggg aaggcttcct      2220
     tgaagatgtg aagcgtactt atgggtatca gaaacctgtt ccttttcgga agcaagtatc      2280
     tgaacttgtg caggagtatc tgtcggatga tgcagctgaa ttctcggacg ttgagcaggt      2340
     agcagaggta gatgctctag cattggtatg ctggaattgt agaaaggaag ggcaccggta      2400
     tcacgattgt gaggaaagac ggaaaatatt ctgttacggt tgcggtaccc ctaattctta      2460
     caagccgtcc tgccacaaat gccaaaaaaa acgggaagtt gaacacacga ccccgacaac      2520
     agccgtgtgt tctccgaaac aagccagcga attccgatgt cagtcagcaa tgaatacaag      2580
     cttagaggag gcagctactg atgcaacagt tttttggcat cagcaaatac agcacagaca      2640
     attaccggac ttatcaataa acccagttag aactcattct cgaaatgcaa aaagaatgag      2700
     agacttttgg cgagcggctg aaacgataaa tgctatcaga tacaaaaaca tggatagacg      2760
     gccgtacgca gaggttcaaa ttctaggcag attggtgctc ggtcttttag atactggtgc      2820
     atctatgagt gccgtcggtg ggaatttggc caatcaaatt attaaacaga gaatggcgtt      2880
     caaaagggtg gcaactacag ttaatacagc cgatggccaa cagcaaaaag tggtaggccg      2940
     attaaagact ccaattcagt atgagggaaa gatacatgag cttgatttat atattattcc      3000
     ttctctgagt caggacctgt atttgggtat tgacttttgg accaatttcg aacttttgcc      3060
     ccctgaaatg agtatagatg aattaagtag cgatgcccat gttttgtctg acatccagca      3120
     gtctaaattg cagtcagtca ttaagcagtt tccatctttt gcggttttag gtttgggaaa      3180
     aacgagcata ctttctcatt ctatcgatgt tggagatgcc aagcctgtga aacagagaca      3240
     ttttccagtt tcgccagctg tggaaaagtt gctttacgag gaagtcaacc gtatgattca      3300
     gctaggcgta attgaggaat cagatagtcc ttggtcttcg cccgtcgttt tggtgcagaa      3360
     gccaggaaag gtacgactct gcctcgatag caggaaggta aacgccgtaa ccaagaaaga      3420
     tgcgtaccct ttgccacaaa ttgatgccat attaagtcgt cttcccaaag caaattttat      3480
     ttcaagtctg gatcttaagg acgcctattg gcaaattcca ttagatccgc agtcgcgcga      3540
     taaaaccgcg ttcacgatcc ctggcaagcc gttataccag tataaggtaa tgcctttcgg      3600
     tttaactaat gcttcgcaga cgatgaccag gttgatggat aaggtgatac ccgcagaact      3660
     cagaaatgaa gtctttgtat atctagatga tctcttgatt gtatcagata gttttgaggg      3720
     tcatctaaag gttttagaaa cggtttccag tcgcataagg gccgctggat taactttgaa      3780
     tgtggagaag agcaaatttt gcatgaaaag tgttaaatat ttgggccata ttgtgggcga      3840
     gggagtagtt cgaacagacc ccgaaaaaat atcggcaatg acggattttc cactgccacg      3900
     atctttgaag gcactgagaa gatttctcgg aatggtcgga tggtatcgga aatttatcag      3960
     taattttgca gctgtatcag ctcctttgac agacctctta aagcctaggc agaagtttgt      4020
     aatgactccg gaaggagaag aagcgtttac taaattaaag gaaatgcttt gctcggctcc      4080
     agtgcttcgt agtcctgatt ttagtaaacc attttacatt cattgcgatg ctagcaactc      4140
     cggagtggga ggagttttgg ttcagaaagc tgagagtggt gaagaatgcc cgatagcctt      4200
     tgtatcgaaa aagttaaaca aggctcaaaa gtcgtacacg gttagcgaaa aggaatgttt      4260
     ggcggcaatt atttgcataa aacggtttcg agcgtatgtg gagggccacg actttacagt      4320
     cattacggat catgcgtccc tcaaatggtt gatgtcccaa acggatttga actccaggct      4380
     tgctcggtgg gcgttgaaac ttcaaggatt cacgttcaaa attgagcatc gaagtggtaa      4440
     gctgaacgta gtccctgacg cgttatcccg agtcaatgag gaagagatag ctgccgtaga      4500
     tgcgagtcat ggattattag ttgacttaga atctgcacat tttcttgatc ctgactatat      4560
     agagctgatc aaaaaggttg aggctaacgc tagcagtctg ccagatttaa aagtagcgga      4620
     cggatttctc tataggaaga cagagcattt aacaggagat cctatgcatg acagtttttg      4680
     ttggaaacta tggattccgg cgggcttggt gcccgaagtt cttaaaaagt ctcatgatga      4740
     tcctttagcg tcacatggag gtgtccataa aactctagag agactaagga ggtattatta      4800
     ttggccaaga ctggtgaagg atgtgaagga atatattcag gcgtgcgaca tctgtaagac      4860
     gaccaaggct cccaatagca ctttaagacc acctatggga gtagcaccag agtccgcgag      4920
     gcctttccaa aaactttacg tggatttttt gggcccgtat cctaggtcaa gaagtggaaa      4980
     tgtggccata tttatcgtgc tagatcacta cagcaagttc gtttttctga aggcggtgaa      5040
     gaaattgaca gcggacgtgg ttgtgaaata tatgcaggat gatttattcc atacttttgg      5100
     ggtcccagag accattgttt cagataatgg atctcaattt aaatcagaat tgttccaaaa      5160
     gctgttgagg gagtacaaaa tttcacacac ttttaccgcc gtttactcgc cacaagctaa      5220
     tgcatccgag agggtaaatc gatcggtgat agctgccata cgatcgtatg tacgcagcga      5280
     ccagaaggat tgggacgagc agctaagcag catctgctgt gctctcagat cagcggttca      5340
     ctctagttta ggcacttcac cctattatat gattttcggg cagcatttca tctcatctgg      5400
     tgcaacgtat aaggtgttga gagctcttag tttgcttgaa gataggtctt tggcattcac      5460
     gaaagaggat tctttagaac ttgctcgcag caaagcatcg gagataatga aaaaccaatt      5520
     cgaaaagaat gaaagaagat ataatctgcg atcgaaggaa gtatctttta gtaaaggcca      5580
     agaagtttat cgaaggaact ttaagcagag caacttcgca gctggttaca acgcgaagtt      5640
     gggtccgtct ttcattaaag ctagagtaag agataagatt ggacaagttt actatgatct      5700
     tgaagatttg caggggcgtt atgtaggccg attccacgcc aaggatataa agcagtagcc      5760
     tcgcaagctg tttatcagtc ttggagtgtt gatccccaag cctgatcttg ctaggggggt      5820
     attt                                                                   5824
//
ID   Gypsy-7_DSer-LTR repbase;    DNA;    INV; 2120 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2120
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1995-1995 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 2120 BP; 621 A; 388 C; 500 G; 610 T; 1 other;
     tgtagcgctt gctcggtata agatactttt tattagcgcc atctgttggt cgatcatatg        60
     tcgaaaggcg gctttgccag tgtagcaagc gtaggtcggc tagggcacga aagatcgggt       120
     gagagagtaa cagaggcatt tgtcaacggt ctccccgttt cccccacttt cacattgggt       180
     taccgccact tttccggcgt catcttccag cattccattt ttggctgctg aagtgtagtg       240
     actcctatat ttggcgactg gcgacaaaat ttcgaaaaag taatcgcgag tgttcaaagt       300
     gctgagaata caattttgct tattggccac tgagccacga atagaaaggt gagcgtacag       360
     atagggaaag cataggcagc ttgaacttat ttatgaattt taaaggctgc aatttgtacc       420
     gctcgaaggc ccgaggagag gcgaggggca ggcaacgaaa cgacgccggc gcagcttctt       480
     ggattctttt aagcgcctgg atctgaattc taggaggagg acttccccgt cgccccgctc       540
     accagagctg gggaaaatat tactttttat ataatttaat ggggttgaag cataattaat       600
     cgccgaatgc ggtagaacga cctttgtccc cttggcgaac agctctagag agcacaacta       660
     agcagagaat tcggtagcag tcgtacgagc ttttatgcca gagtcggtgt aggcgtaggc       720
     ttcggcaaag cattgcgatt agtttaatgt aattctttcg ggcgttttga actcgccgcc       780
     gcaatgcgat cccggccaaa gtgcatttaa ttcgagcccc atgcctcatc gcgacgaact       840
     attgtaaaga aaaagggaat tttcgacccc cattttgttc cagtgtcagt gaagataata       900
     tggaaaatta gtgtaagaaa aaatagaaat tttaagttag gttaaatttc ggaaaaattg       960
     caagaaaaaa aaagaatgat gtgaaatgaa cttaggcata tgtaaagagc aatgtgcggc      1020
     aaagagaaat attaattcgt tgcattccgg tgaaattaat gagaaatcga tttaaatagc      1080
     gcgggccgat gcgtcatttt cttatagttt cccccccatc ttcgtagtct cttttaggga      1140
     tgtgaatttc ttttttgcat gtatcatttc atcccaattt tcagctagcc tccgaggaaa      1200
     gcgctttcat cggtggagtt aagaaaatgg tgagtgtcga agtaataatt taaataattt      1260
     caagtacaag aaagaaagaa aaagaaatga atgggaagaa agaaaatgtc ccaaattatg      1320
     agccgttaac gtaaaagaaa gatcgaaatt caaccgaacc aacggcagaa aacgaagagg      1380
     gaaagggaaa gaaaagagga acgctgatac ataaggcgat tgcgtttaag gctatttatg      1440
     ctgagggctt ttatgcttct ccaattcgaa ttattatttt tgttgttgca acatgtggat      1500
     ttaacctcag tcagcgcgat taataatttt ccttcaactt gccaaaaatt gttttgccat      1560
     catttttatt aaggcccgaa attgagtcga agggcgtata tttatttatc attggtattc      1620
     taagttttaa tgtttaattg tctatatacg tttcctattt taagtaatga atttatattt      1680
     ttctagtttt aaataaaatt attataatgt tttaaaatgt cgagtattgg ccgcagctgg      1740
     catgcgttgt gatgtagggt agcacttgtc gaaggggtcg ctcaagctat atagctttga      1800
     ggatgggagc gaccatagga agggtgggca aactagagcc tccagaacac caggagtgct      1860
     aaaaaagggg aagtaagccg aagagagtta aattttcctc aacttttatt tatgtgttgt      1920
     ctgtwtctct gtcccggttt aagcttgttg tagcacgcag ttatttctgt ttaaaattat      1980
     gcaaaggcaa cccgagatct gagcaagacc atcactcccg tagccgacga gccgaagccg      2040
     gaaaaatatc ttgcgtgcgc tccgatctcg agctaacaac ttgcctgtga catttgtttt      2100
     gagtgtagcg attcgttaca                                                  2120
//
ID   Gypsy-7_DSim-I repbase;    DNA;    INV; 6790 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   15-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DSim-I.
XX
NM   Gypsy-7_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6790
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1514-1514 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~86% identical to Gypsy1-I_DM.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(606..620,624..2006)
FT                 /product="Gypsy-7_DSim-I_1p"
FT                 /translation="MGPTAVSHTQLPMCEPFRRYRTSKKYASDSESESDDS
FT                 TGNSARKNIRASTFSSSEMSLEAEQIKALIRAFXEQALESQRKEAELRTTI
FT                 QELAGQVAALRVAPVQKETPLIKVYKPVDISGLVPCNETLDAVKCLPEFSG
FT                 TQETYVSWRQAANAAYHMFRKYEDSSRHYQAVVIIRSKIKGPADAVLSSFG
FT                 TVLNFDAIINRLDFTYSDKRPIHVIEQELGTLRQGSLTLLQYYDEVEKKLT
FT                 LLTNKANMSYEPPAAAVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMP
FT                 SALALAQEVESNHERYTFATSFARSQEDRDRRQYPKVQERQQALPQSNSQG
FT                 SAGKNPHFTRQHRAQVHSAPRSGRTAREGTPEPMDVDPSSSRVQPSHAPAF
FT                 PKFKPAASGRSAPPKRQRVNHVAPALDNSDTAYATAASSAADKIDDDAILE
FT                 YDSDAVNFLGENPCYPSSDEE"
FT   CDS           join(1964..3877,3802..4377,4277..5047)
FT                 /product="Gypsy-7_DSim-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="FFRGKSLLPVIRRRVAGIDMKLLVDTGASKNFIRPFK
FT                 GLKGIRPVESPFAIHSIHGVTTITKKCFVSIFNLKATFFLLPDLTSFDAIV
FT                 GLDLLKQAGASLCLASGQLKWGSEAEQIDFHTCPDVNFTNVDCSDAPPLIK
FT                 GAFLKMLTNRKKAFANPNEALPYNTSVVATIRTIDEEPIYAKLYPYPMGAA
FT                 DFVNGEIQELLKNGIIQRSKSPYNNPIWVVDKKGTDETGRRKMRLVLDFRK
FT                 LNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLAERDREKTS
FT                 FSVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFS
FT                 EDENAHVKHVDWVLKSLYDANMRISAEKSRFFKKSVSFLGFIVTNNGAATD
FT                 PEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISDILKGEN
FT                 GSVSRHRSRSIQVEFSEAQRRAFEKLRNILASEDVILRYPDYKKAFDLTTD
FT                 ASAYGIGAVLSQEGRPITMISRTLSDREVNYATNERELLAIVWALAKLRHY
FT                 LYAVKEINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARMFYKPGKSN
FT                 LVADALSRQQLNVFDDHSRAQPRFTANFRSPTLSSQRTNPRPQSCAATVHS
FT                 ELSLTHTIESTDKPVNCFQNQIILEEARSPWKRTFILFGNKKRHSINFSCK
FT                 QALLEELSNTIIPNGVNAFHCDLHTLAQIQNEVVRQFPATKFWYCKNRVTD
FT                 IFAVQERKEILTAEHNRAHRSAQENVKQVLSEYYFPKMAKLASEIAANCKT
FT                 CAKAKYDRHPKKQELGETPIPALHYITHQPIAKLAPRRNMIDIRKNRSSVK
FT                 HQSRPYIILHIDIFSTDKKYFLTCVDKFSKFAMVQPIQSRTIEDLKPPLLQ
FT                 LMNVFPKAKAVYCDNEPSLKSHTIMAMLENHFGVSISNAPPLHSVSNGQVE
FT                 RFHSTLIEIARCLKIDKGIDDTVELILLATTRYNKSIHSVIDKKPAEVMRA
FT                 SPDETQKDVQEKIRNAQNATRSRENVSRQNKVFQVGDKVLVKSNRRLGNKL
FT                 TPLCEERTIEADLGTTVLIKGRVVHKDNLR"
FT   CDS           join(5367..5480,5493..6461)
FT                 /product="Gypsy-7_DSim-I_3p"
FT                 /note="envelope protein."
FT                 /translation="MISVPGLIPSSTVKSWLWMRGMPAYTAPSEHSAYTRR
FT                 VLTKPTRRHARYVFPLNQSHMRKLLSIDIAHLRDMLNSLSIHHRVARSLDF
FT                 LGTALKVVAGTPDAEDFEKIKFTEARLVDAHNSQIEINTKTQVRINELTTT
FT                 VNKILEFSKNAQIDSGHLFEMLLTRNRMIVMELQNLMLTVTLAKINVVNPS
FT                 ILDHADLEQVWIEEPTDTPIREILSVASVKILQSPNILHFIIKFPKIKMAC
FT                 NKITILPVAHRDTVLRLEDNVVAECNGEVRTVKNCSISPGAMFCQLSMVSS
FT                 CAQELHAGVMAHCTAQQSDLHPITYVDEGMIVINDRPALVRVDNGTNIHIK
FT                 GTYLITFIESAMVNETVS"
XX
SQ   Sequence 6790 BP; 1925 A; 1708 C; 1533 G; 1616 T; 8 other;
     ggcacccaac tacaggaaac cgaacccaca aaactacaca caaattatgt aagtgagctc        60
     ctgatccaaa ctgcacttag aatttttaat atttaaaaaa aaacatttgt gcgactaacg       120
     aagttagaat aacaaagtct gcacttccat aacattgtaa acgtcgtgca ttaaattaaa       180
     tgttgaattt taaattttga ttgactgtgc gggttatttt attccacact agtcgcaaag       240
     attattgact ttgcaatttt tattctattg tgtgcatttc gttccacttt gtttttcatg       300
     tgaattcgct acactagctc tgcagccctc tcgagctttg ttgttgttac cccactccac       360
     ttcgccaacc gacaccggcg catgcattgc tgtggcaatg tttgtaattt tatatwtctc       420
     tttgtcttcg cggtggcaaa ttttatcttt gtatatttgt ttctcttgat ggaaacccgc       480
     cccccacagg cccttctcct tgttgttact tagctgggca gcggctctgc tcactgagtc       540
     ttcggccagt gccttcaaag cggcgactca gcccccgcgt ccccctcgca gtacggtttg       600
     gccccatggg cccaacggct tgagtttccc atacacagct ccccatgtgc gagccgtttc       660
     ggcggtatag aacttctaaa aaatacgcta gcgactcaga gtccgaaagc gacgattcta       720
     caggaaactc tgcacgaaaa aatatccgag cgagtacatt ttcttcaagt gaaatgtctc       780
     tcgaagcgga acaaattaaa gctctcataa gggcgtttsa ggaacaggcc ttagagagtc       840
     agcgcaagga ggctgagttg cgtacaacaa ttcaggaact tgccggacaa gtcgcagctc       900
     tacgggttgc ccccgtacaa aaagagaccc cactgattaa agtttataag ccagtggata       960
     tctccggact ggtcccttgc aacgaaacat tagatgccgt taaatgtctc ccagaatttt      1020
     cggggacaca ggagacatac gtctcctggc ggcaagcggc aaatgccgct taccacatgt      1080
     tcaggaaata tgaagatagt tcacgccact atcaagcggt ggttattatt aggagcaaga      1140
     tcaaaggccc tgctgacgca gtgctatcat ccttcggaac tgtcttgaac ttcgatgcga      1200
     ttataaaccg gctcgatttc acgtacagtg acaaacggcc gattcatgtg atcgaacaag      1260
     agctgggcac cctcagacag ggtagcctca cgctactcca atactatgat gaggtagaga      1320
     aaaaacttac cttacttact aacaaggcga atatgtcata tgaaccgccg gcagcggcag      1380
     ttctgtgtga aaaattccga gatgacgcct tgcgagtttt cgtctcagga ctcaggcgca      1440
     acctcacaga tgtgctattt gcggcaaagc cgaaggacat gccatcagcg cttgctctgg      1500
     cgcaagaggt ggaatccaat catgagagat acaccttcgc aacttcgttt gcaagaagcc      1560
     aggaagatag ggaccgcagg cagtacccca aagtgcagga gcgccaacaa gcccttccac      1620
     agtccaactc gcagggaagt gccgggaaga acccgcactt taccaggcaa cacagagcac      1680
     aagtgcactc tgctccgcga agcggcagaa cggcccgaga aggcacacca gagcctatgg      1740
     acgtggatcc ctcatcgtcc agggtacaac catcccacgc cccggctttc ccaaagttca      1800
     agccggccgc gtccggccgc tcggcccccc ctaaaaggca aagggtcaac catgttgctc      1860
     cggccttaga taattccgac acggcttacg ccaccgcagc ctccagtgca gcggataaga      1920
     tcgatgacga tgccatctta gagtacgact cggatgccgt taatttttta ggggaaaatc      1980
     cctgctaccc gtcatcagac gaagagtagc agggatcgac atgaaactct tggttgacac      2040
     gggcgcgtca aaaaatttca tccgaccatt taaggggttg aaaggcatcc gcccagtgga      2100
     gtccccattt gcaatccatt cgattcatgg tgtgactaca atcacaaaaa aatgttttgt      2160
     gtccattttt aaccttaaag ctaccttctt tttactaccg gatttgacct ccttcgacgc      2220
     gatcgttggc ctagacctct taaagcaagc cggcgcgtcg ctttgcctag cttccggaca      2280
     gctcaaatgg ggctccgaag cggagcaaat tgattttcac acctgccccg atgtcaattt      2340
     taccaacgta gattgctcgg acgcaccgcc cttaattaag ggtgcttttt taaaaatgct      2400
     cacgaatagg aaaaaagctt ttgctaatcc taatgaggct cttccttaca atacgtcggt      2460
     ggtagccacc atccggacga ttgatgaaga gcccatttat gccaaattgt acccatatcc      2520
     catgggagca gctgatttcg tcaacggcga aatccaggaa ctacttaaaa atggcattat      2580
     ccagaggtcg aagtccccct acaataaccc aatatgggtc gtagacaaga agggcaccga      2640
     cgagacgggc aggagaaaaa tgcgtttggt actggacttt cgcaaactga acgaaagaac      2700
     agtaccagac agatacccca tgccaaatat ctcaatgata ttggggaatc ttggaaaggc      2760
     caagtacttc acgacactcg acctgaagtc tggctaccac caaatcacgc tcgctgaacg      2820
     cgaccgtgaa aagacgtcat tctcagtgaa cggagggaag tatgagttcc gaagattacc      2880
     gttcggactc aggaatgctg caagcatctt ccagagaaca attgacgata ttctgcgaga      2940
     acagatcgga aagttctgct acgtttacgt cgatgacgtc atcatctttt cagaagatga      3000
     aaacgcccat gtcaaacacg tagattgggt tctgaagagc ctgtacgatg ctaacatgag      3060
     aatatcggca gaaaagtcgc gtttttttaa gaaaagcgtg agcttcctgg ggttcatcgt      3120
     caccaacaat ggcgcggcga ctgacccaga aaaagttaag gccataaagg aatttccaga      3180
     acccaaaaac gtatttgagg taaggtcatt cttgggcctg gccagctatt atcgttgctt      3240
     cattaaagac ttcgcatcaa tagcgaggcc catttcagac atactgaagg gtgagaacgg      3300
     gagtgttagc cgacacaggt ccaggagtat ccaggtggaa ttttccgaag cgcagcgacg      3360
     tgccttcgaa aagctacgca atatcctggc atctgaggac gtcatcctta gataccctga      3420
     ttacaagaaa gcatttgatc taacgacaga tgcttckgcc tacggcattg gcgcagtgct      3480
     gtcccaagag ggacgtccaa ttacaatgat ctctaggaca ttgagcgaca gagaggttaa      3540
     ctatgctacc aacgaaaggg agctgttagc catagtctgg gcactagcca aattgcgaca      3600
     ctacctttat gcggtcaaag agataaacat ctttaccgac caccaaccct tgacgtttgc      3660
     ggtatcggaa tccaatccta acgccaagat caagaggtgg aaagcacgca tcgacgaatc      3720
     cggcgctcga atgttttaca agcccggaaa aagtaacctc gttgcagatg cactctccag      3780
     acaacaactc aacgtttttg acgaccacag tcgtgcgcag ccacggttca cagcgaactt      3840
     tcgctcaccc acactatcga gtcaacggac aaacccgtaa attgcttcca gaaccagata      3900
     attttagaag aggcgcgctc cccttggaaa cgcactttta tattatttgg gaataagaag      3960
     cgtcactcga taaatttctc ctgcaaacaa gccttgctag aggaactttc caacaccatt      4020
     atccctaatg gtgtgaacgc cttccactgt gatctccaca cgctggcaca aatccagaat      4080
     gaagtggttc gacaatttcc ggccacaaaa ttctggtact gcaaaaatag ggtcaccgac      4140
     attttcgcgg ttcaagagag aaaagaaatc cttaccgccg agcacaacag agctcacagg      4200
     tcggcacaag aaaacgtgaa gcaggtactc tccgagtact acttcccgaa aatggccaaa      4260
     ttggctagcg aaatagcagc caattgcaaa acttgcgcca aggcgaaata tgatagacat      4320
     ccgaaaaaac aggagctcgg tgaaacacca atcccggccc tacattatat tacacattga      4380
     tattttctca acggataaga aatacttcct cacctgcgtg gacaagtttt cgaaattcgc      4440
     catggttcaa ccgatacaat ctagaacaat wgaggaccta aaaccacccc tgttacaact      4500
     tatgaatgtt ttccctaaag ccaaagccgt atactgcgac aatgaaccct cattgaaatc      4560
     gcacacaata atggccatgt tggaaaacca tttcggcgtc agcatctcga atgcaccgcc      4620
     cctccatagt gtctccaacg gacaggtgga acgcttccac agcacgttga ttgagatcgc      4680
     tagatgccta aaaatcgaca aaggcataga tgacacggtg gagctgatct tgctggcaac      4740
     taccagatac aacaagtcca tccattctgt cattgacaag aaaccggccg aggttatgcg      4800
     ggcaagtccg gacgaaacgc aaaaggatgt ccaagaaaaa attaggaacg cccaaaatgc      4860
     gaccagaagc cgagaaaacg tttctcggca gaacaaagta ttccaggtcg gtgacaaagt      4920
     cctagtaaag tcaaacagac gtctaggcaa caaactcact cccttatgtg aggagaggac      4980
     catcgaggcg gacttgggga ccacagtcct aattaaaggg agggtggttc acaaggacaa      5040
     cctcaggtaa aacgagcaag acctaggagc gagtcactcg aggtgtttcc tttttatccg      5100
     ctttcattcg tagccacttg gcatttcatt ggttcttcat tcgtaccact gttttattgt      5160
     attcgtagcc acttggcaga ttcgtttttt ttcctccatg cctattggcg gtgggttgct      5220
     tataccttct tcgtagccca tgcattaaac gcgctgatct ttcggagttt aattcttccg      5280
     cacatttttc atactggcgc ttcactcggt cgtttctgcc agtacgcttc gaccctattt      5340
     acagacttgc ccatgacaat gcccgtatga tatctgttcc cgggctgatc ccgtcatcga      5400
     cggtcaagtc ttggctctgg atgagaggaa tgcctgcgta taccgctccg tcagagcatt      5460
     ctgcgtatac tcggcgagtg taggcgagtt gattgacgaa gccgacacgg agacatgctc      5520
     gatatgtgtt ccccctgaac cagtctcaca tgagaaagct tctgagcatt gatatcgctc      5580
     atctccgtga tatgcttaat tcgttgagca tccatcacag agttgccagg agcctggact      5640
     tcttgggaac tgcgttaaag gttgtcgctg ggacacctga cgccgaagat tttgaaaaaa      5700
     taaagttcac agaagcacgt ttagttgatg cgcacaatag ccaaattgaa attaacacta      5760
     aaacacaagt tcgcattaat gaactcacga ccaccgtcaa taaaatcttg gaattctcta      5820
     aaaatgcgca aattgattca ggccacctat tcgagatgtt attaactcgt aataggatga      5880
     ttgttatgga attgcagaat ttgatgctaa ctgtcacact cgccaaaatt aacgtagtca      5940
     acccaagcat tttggatcat gcagatctgg aacaagtttg gatcgaggag cccaccgaca      6000
     cccccataag ggaaattttg tccgttgcgt ccgttaaaat tttacaatct cctaacatat      6060
     tacacttcat tattaagttc cccaagatta agatggcctg caacaagatc accatccttc      6120
     cggtggcaca ccgcgatacg gtgttgaggt tagaggataa tgtggtggca gaatgcaatg      6180
     gagaagtccg caccgtgaag aactgctcca tatcacctgg ggcgatgttc tgccagttat      6240
     ccatggtgag ctcgtgtgcc caagaactcc acgctggagt catggcgcat tgcactgcgc      6300
     agcagagcga cctgcatccg atcacttacg tcgacgaagg gatgattgtc atcaacgata      6360
     gaccagcact agtgcgcgtg gacaatggaa ccaacatcca cattaaaggc acgtacttaa      6420
     taacattcat tgagagtgct atggtcaatg agaccgtttc ataaaccacg acacggtcca      6480
     gaaacgggca ccgggagtag ctaactcccc tgtcctgaat atatcaatga aacatgacat      6540
     cctgagcctc ccatatcttc accgcttgag tgaaaggaat ttggagcaaa tcataagatt      6600
     cgaggaaaaa gtcgacggat tccgactaag tcagatagcg ctaattgcag gagcaatttt      6660
     atgcgctctt atctgctttg gtttatactg cctgcgtgcc acaagggcta gaagatccgc      6720
     agcccaactt amggawgtcc tcgmccaaat agggtcggcc gagggcggcc tcaatcttga      6780
     ggggggagtm                                                             6790
//
ID   Gypsy-7_DSim-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   15-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_DSim-LTR.
XX
NM   Gypsy-7_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-435
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1515-1515 (2012).
XX
RN   [3]
RP   1-435
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-DEC-2019).
XX
DR   [3] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 435 BP; 127 A; 119 C; 87 G; 102 T; 0 other;
     agttaactaa gttaaccgga ccgatcgtcc gcaccccagc tccggtcaaa ttgctgacca        60
     agcatttggc cggaagccca tgcatagccg gcaaaagctc tgcacattgg cggaggccgc       120
     tatgaagctc ttctttgtta gcttttaagt ttcagttcgt tttggacatt caatgaataa       180
     agagcactag ctcataaaac taactccggc aatctgtcgt tatcatttta acctaccata       240
     gctatctgag tccctaggcc agtagccaaa aggaagacag tcatcttccc aacataatcg       300
     tcataaatct tcaagtggaa accaccaccc ccgccttcgg acgaaggcat cagaagatca       360
     tcggccaacc ggcaaattac cagtgacggc ggcgagagat tccccccacc ttacagcatt       420
     ggaaaataat taatt                                                        435
//
ID   Gypsy-7_DTa-I repbase;    DNA;    INV; 7569 BP.
XX
AC   AFFI01006442;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DTa_;
KW   Gypsy-7_DTa-LTR; Gypsy-7_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7569
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006442; Positions    1869    9437.
XX
CC   Positions [6627-7118] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2726..3757
FT                 /product="Gypsy-7_DTa-I_1p"
FT                 /translation="MGIDRSPDRGSQEAEKPVCALCKSEVKTANERFETTC
FT                 HHEFHKRCINIHFKKSENCPVCQVACRPVQETSGLLTRSQSKTRTGEGNNE
FT                 RNPSGDTPGTSRGTETANYRNSDTNALASAVTLVAMERRLLSVLSEKMTEL
FT                 VQTAVVKSLSSMNPETIASAAVLGEDRGDTNTPVDTVNRRSNTRGSLFQGA
FT                 NSNNPTSGYDRADRSITPELGIRPEKIVHILNGWKIEYSGSGVSVDDFIYR
FT                 VEALTHQTLEGNFAVLCRNVSVLFEGKANEFYWRYHKSVVDVRWDNLCSAM
FT                 RLQFRQNRDDVDIEELIRNRKQKPNETFDGFYDSVNVWIDQLQSPWSPRKI
FT                 V"
FT   CDS           4406..6430
FT                 /product="Gypsy-7_DTa-I_2p"
FT                 /translation="MGLKHICSVPRGGRDLRPFLPISMLNRTVYGLLDSGA
FT                 SISCVGGNLATEIIEKKMSYKALNTEASTADGNPQQILGKFKVNIEYGNIR
FT                 KSLILYIVPSLKQDLYLGIDFCRLYDLLPEQLQVAAIESSELSEDGNQGND
FT                 DEHDLSEKEKVKLRNVINCFPSFTLEGLGKTNLIKHAIDVGNAKPVKQRHF
FT                 PVSPAVEKNMYVEIDRMLQLGVIEESESAWTSPIVMVTKPGKVRLCLDCRK
FT                 VNSFTVKDAYPLPQISGILSRLPKAEYISSLDLKDAYWQVPLEVESRDKTA
FT                 FTVPGRPLYQFTVMPFGLCNATSTMSRLMDKVVPACLKDRVFVYLDDLLVV
FT                 SSSFESHLEVLMEIALCLKRAGLTINIDKSHFCMRRVRYLGHIIGDGGIRT
FT                 DPDKVKAITDFPIPRTLRGLRSFMGLCGWYRKFVPNFASLSSPLTDLMTTK
FT                 RKFSLTPEAIKAFEELKACLSKTPVLCNPDFTKPFAIHCDASKTGVGAVLV
FT                 QESEEGDKRPVAFISKKLNKAQRNYTVTEQECLAAIVALKHFRAYVEGHPF
FT                 KIVTDHASLQWLMANRDLSSRLGRWAIALQRFEFTIEHRKGSLHVVPDSLS
FT                 RVNEDEVAAVDFREGLLVDLSSEHFKSAEYKEFAAKVSANEPSFPDLRVED
FT                 GFVYRTAEHLSGEQVHDELRMEALDS"
FT   CDS           6318..7247
FT                 /product="Gypsy-7_DTa-I_3p"
FT                 /translation="MNRASPISGWRMVSCTGQRSIYLENRFTTNYAWKLWI
FT                 PRKLVPEILFQAHNSPLASHGGIHKTIERIKRYYFWPRLVPEVKAYINACE
FT                 TCKTTKPPNQVLRPPLGRAPESLRFFQRIYIDFLGPYPRSKSGNVGIFIVL
FT                 DHFSKFVFLKPVKKINADVVIKYLEGELFMTFGVPETVVSDNGSQFRSEVF
FT                 QKLMRQYGISHTLTAVHSPQANASERVNRSVTSGIRSYVCPNQKNWDESLH
FT                 KICCALRSSVHSSIGTTPYYLAFGQHMITDGPTYSLLRKLNLLDDRSLMYN
FT                 RQDSFEIIREEATKGKGS"
XX
SQ   Sequence 7569 BP; 2288 A; 1600 C; 1689 G; 1992 T; 0 other;
     gtcgaaacgt atcctgaagt taatattaca tttattacac aggccgacaa aatgtgacat        60
     gggtcggtgt ccaggcctgc caccatttta tttcgataaa tgaggctttt ctaagcatag       120
     gttgccacta cgtctatagt ctatcagctc tggtatttgc ggtatcttta atttatgaaa       180
     atcacaaatt ttcttcgtct tttggaatat atcttcaaga gtggtcaaca aattttggta       240
     atcttttcgg aattaaatag ttacatgtcc cttttatacg gtcgttttgg aaaattcaat       300
     ctaactcaac cacaagagaa ggtgggcgca tttaaaattt taaagtcaca gcaaagttta       360
     aaaatcttta tttgtgaaca gcgtttaaaa attaaataaa aatattttct tctacaatgc       420
     atttttgatc caaagacacc ttatgtccct aatttttagg acactcatca ggcttttgtg       480
     tattgtttag gaatttttaa aattgttttt cttccttcct tcacagtgac gatcttcctt       540
     ccttcacagt gacgattcac aaacagtgcc caaacctgtc acaattttaa atatcataat       600
     tctaaacgat cttagtagtt ttgctttgag tataagcaca tgagcgtagc ctactaatct       660
     ttgggggctg aaatgcttga agtgtaatcc ccctccagct tttagcttac gcccatgtat       720
     aaatattttt aaggcaaggg tcacttgtgc tcaaaaacag ttatgagtta cgtaaaatag       780
     tgacaggttt gggcactgtt ttgtgaatcg tcactgtgaa ggaagtagga ataacaattt       840
     taaaaattcc taaacaatac acaaaagcct gatgagtgtc ctaaaaatta gggacataag       900
     gtgtctttgg atcaaaaatg cattgtagaa gaaaatattt ttatttaatt tttaaacgct       960
     gttcacaaat aaagattttt aaactttgct gtgactttaa aattttaaat gcgcccacct      1020
     tctcttgtgg ttgagttaga ttgcattttc caaaacgacc gtataaaagg gacatgtaac      1080
     tatttaattc cgaaaagatt accaaaattt gttgaccact cttgaagata tattccaaaa      1140
     gacgaagaaa atttgtgatt ttcataaatt aaagataccg caaataccag agctgataga      1200
     ctataggcgt agtggcaact tatgcttaga aaagcctcat ttatcgaaat aaaatggtgg      1260
     caggcctgga caccgaccca tgtcacattt tgtcggcctg tgttattaat tgtactttct      1320
     taatttttcc taaagaataa gtgtggctat tcatcgccga ataaattggt taagaaattt      1380
     tgtaattaaa acaaagccat tgaaggtcct ttagatacac atgccaagcc aaagtaaaga      1440
     atcaccactg tatttagctt ccgcacatcc gtaatcttag cgttaataac catgtatacg      1500
     aatcttacta gcggatcaaa tataccaaac atgaacgctt aaattttgaa cagctaactc      1560
     cacaaatgat tcctcgggcg tagatggaca aaggggtcac cagagccatg ctctaggagg      1620
     tgatcaaggc agggtgggca ttccacgacc ataacaacat ctgtggcctc gttccaacct      1680
     aatttctttc gcgaactcgg acatcctcta gaattttttt gtttttttcc caaaatttgt      1740
     ttatcgatat accggttggc aatctcgcct tgctttcgtc gtaagcacgc tcaattctgg      1800
     acttttaaat aataatgtgt agctagtgta cgatccgtct acgcaagacc tccaccccca      1860
     aagccgacga gagatagccg gaatctatag cgtgccccgc aagggcggat cggtaacttc      1920
     aacccaacac aactagtcgt tacacgctac agatataatt cattattatt aaaagataaa      1980
     gtggcgccca acgtggggcc tctgctatgc aaactattcg cagagactca ccgataaata      2040
     agttcgaatc tttcctatat actttcactt tcaaaatgtt ctatttaaaa aaattttttt      2100
     tgtttgggtt tttttagttt ttttatttaa cacttaattg tatgggaata cagagactga      2160
     agacgcaagt tttgtcctgg ccacaattag ctgtctacgt taaaattttt tcttgttgca      2220
     ttcagtagag agccagggat ttcagttcga ggacactgca gaagacttca aacttaggtt      2280
     tgactcctga cccgttctga gtccatgctt ctcccattaa agttccccag tagactcatg      2340
     atattggaat ttagctgtac cttcctgtgg agaggggcgt taaccacgag agtccgattt      2400
     aagaacttag aataaaatta ctttatagag gttaaactcc gtttctaaat gaatcaggaa      2460
     aacgtcagta accgtttccg aatgttactg agtccgactt aagttagaat gggggagtga      2520
     ccaccaccct tcataaccca tctgttagag gaaaagaaca agagagagaa attcaggttt      2580
     tgagaaaagt taatctatcc tacggccggg gacatcaaaa atggagtaag ttttttgttt      2640
     ggtttagaaa aatatcacag acgagatcga gataaacaat tataaataat aaagaaataa      2700
     ataagaaagt aactaaagtc gcacaatggg tatagaccga tcaccagacc gaggctctca      2760
     ggaagcggag aagccagtct gcgcgttatg caaatccgaa gtcaaaaccg ccaatgagag      2820
     gtttgaaact acatgtcacc acgagttcca caaaaggtgt ataaatatac attttaagaa      2880
     gagcgaaaat tgtccggtat gtcaagttgc atgtaggccg gtgcaggaaa cctcgggctt      2940
     actaacgcga tcgcaatcca aaactcgtac aggggagggt aataacgaaa ggaatcccag      3000
     cggagatacc cctggcacgt cgagaggcac ggaaactgct aactacagga atagcgacac      3060
     caacgcactg gcgagtgctg ttacactggt cgccatggaa cgtaggctgc tctcggtgtt      3120
     gtccgagaaa atgaccgagt tagtacagac agccgttgtc aagagcctta gtagtatgaa      3180
     ccctgaaact atagctagtg cagctgtcct tggagaggat agaggggata ccaatacgcc      3240
     agtagataca gtcaaccgta ggtctaacac gaggggaagc ctattccaag gagctaattc      3300
     aaacaatcca acgtcgggtt acgatcgcgc agatcgaagt attactccgg agctgggaat      3360
     acgtcccgag aagatagtgc acatcttaaa cggctggaag atcgaatatt cagggtcagg      3420
     tgtgtcagtg gatgatttca tctaccgggt cgaagcactt acgcaccaaa ctctcgaagg      3480
     aaatttcgcg gtgctgtgtc gcaacgtcag tgtgctgttc gagggtaaag ccaacgagtt      3540
     ttactggcgc tatcacaagt cggtagtcga tgttcgttgg gataatttgt gttcggccat      3600
     gcgtctgcaa ttccgtcaaa accgagacga tgtagacata gaagaactaa ttcgaaatag      3660
     gaaacaaaaa ccaaacgaaa ctttcgacgg attctacgat agtgtaaatg tgtggatcga      3720
     ccaattacaa tctccttggt caccgcgcaa aattgtctga gtactcaaga acaatttgag      3780
     accggagata cgacacgaga tcttgaacgt agaggtgtcg tcggtacagg aattaaggga      3840
     gatctgtcgc cgacgagaag cctttttgga tgatgtcaaa cggtctcaca gctacgtcaa      3900
     ggctacaccc taccgaaggg aaatcgccga attattggag gaaccttact cagaaaatgg      3960
     atctgatcta gaagtcggtt tagatgtcga agcacttgct ctggtgtgtt ggaactgcca      4020
     caaggaagga caccgatacc aggattgcgt agctgacaaa cgggtgttct gctacggctg      4080
     tggagccccc aatacgtaca agcctagttg tagcaagtgc acaaaaaacg taaagtccgg      4140
     cattccgaag tcgccattca aaccgaggat tccgaatgcc gcccgtcacc agtccacgat      4200
     gaccgattag gtagggttga aaaacagccc aaaaacaatc ccggacgtac caaaaagcaa      4260
     tgttagtcga ctacttcatt gtaaaataaa agatttacct gccctttcac ctcaaacgtt      4320
     tttaccccaa ccgtcagtgc tagcacaaag ccaccgaaat tcccggagga tcaaaaagtt      4380
     ctgggaaaat gtacgacaat gtaggatggg gctgaagcac atctgttcag ttcctagggg      4440
     tggtagagat cttcgcccat ttttaccaat ttcaatgctg aaccgtactg tatatggact      4500
     gctcgactcc ggggcttcaa taagctgcgt tggagggaat ctggccaccg aaattataga      4560
     gaagaaaatg tcgtacaaag cgctgaacac cgaggcttca acagcagatg gaaaccctca      4620
     acaaatactt ggaaaattta aagtcaacat agaatacggc aacatcagga aatccttgat      4680
     tctgtacata gtaccttcgt taaaacaaga cctttatttg ggaatagatt tctgtagact      4740
     ttacgacctc ctcccagagc aactgcaagt agccgcgata gagtcaagcg agcttagcga      4800
     ggacggtaac cagggtaatg acgatgaaca cgacctgtcg gaaaaagaga aagtgaagct      4860
     gaggaacgta atcaactgtt tcccgtcatt tactctggaa ggtctgggaa aaaccaacct      4920
     tataaagcat gccatcgacg ttgggaatgc taaacccgtt aaacaaagac attttcccgt      4980
     gtcaccagcc gtcgaaaaaa atatgtatgt agaaatcgac cggatgttac aattgggagt      5040
     aattgaggaa tcggaaagcg cctggacatc tccgatagta atggtcacca aacctgggaa      5100
     ggtgagacta tgcttggact gtcgcaaggt aaatagcttc accgtaaagg acgcatatcc      5160
     cctacctcaa atcagcggaa tattgagccg gttgccgaaa gctgaataca tttctagcct      5220
     cgacctgaag gacgcttatt ggcaagtgcc gttagaggtc gagtcgcgtg ataaaacggc      5280
     gtttactgtt ccagggaggc ccctatatca attcacggtt atgccattcg ggctatgtaa      5340
     tgctaccagc acaatgtctc gcctcatgga caaagtcgtt ccagcgtgtc ttaaagatag      5400
     agtattcgtc tacttggatg acctcttagt ggtctcgtcg agttttgaga gtcacttgga      5460
     agtgttgatg gagattgctc tgtgccttaa gcgagcggga ttgactatta acattgacaa      5520
     gagtcacttc tgcatgcgaa gagtgcgtta tttgggacat atcattggcg atggcggtat      5580
     acgaacggat cctgataagg ttaaagcaat cactgacttc cccatcccga gaacactgcg      5640
     tgggttaagg agtttcatgg gtctatgtgg ttggtacagg aagtttgtgc caaattttgc      5700
     ttcactgtcg tctccgctga cagatctaat gacgactaaa cgcaagttca gcttgactcc      5760
     cgaggcaata aaagcattcg aggagttgaa agcatgcctc agcaagacac ccgtattgtg      5820
     caatccggat tttacaaagc cattcgcgat ccattgcgac gcaagcaaaa caggtgtcgg      5880
     agccgtgtta gttcaagagt cggaggaagg tgataagcga ccggttgcat ttatttcaaa      5940
     aaaactgaac aaagcacaac gaaattacac ggtcacagag caagaatgtc tagccgcaat      6000
     agtagcgctc aagcatttca gagcttatgt agaaggccat ccgtttaaga tagttaccga      6060
     tcacgcgtcg ctccaatggc tgatggcgaa ccgtgattta agctcccgat tagggcggtg      6120
     ggcaatagcc ttacagcgat ttgagttcac tattgaacac cgcaaaggct ccctacacgt      6180
     cgtaccggac tccttgtcgc gcgtaaatga agacgaggtc gccgcagtgg atttccgaga      6240
     aggcttgttg gtagatttaa gctcagaaca tttcaaatca gccgagtaca aggagtttgc      6300
     cgctaaggtg tctgctaatg aaccgagctt ccccgatctc agggtggagg atggtttcgt      6360
     gtacaggaca gcggagcatc tatctggaga acaggttcac gacgaattac gcatggaagc      6420
     tttggattcc taggaagtta gttccggaaa tcctttttca agcgcacaac agccccttag      6480
     cttcacacgg gggaatacat aagactatcg agcgaatcaa acggtattat ttttggcccc      6540
     gactagtacc agaagtaaaa gcgtatatca atgcatgcga aacgtgtaaa actaccaaac      6600
     caccgaatca ggtgttaaga ccaccgttgg gcagggcacc ggaatccttg cgattctttc      6660
     agcgtatcta tatcgacttc ttaggtccct acccacgatc caaaagcgga aacgtcggaa      6720
     tatttattgt tctcgatcat ttctctaaat tcgtattttt aaaaccagtc aagaagatca      6780
     acgctgacgt agtaatcaag taccttgaag gcgaactgtt catgaccttt ggcgtacccg      6840
     aaacggtcgt gtcagacaac ggatcgcaat ttcggtcaga agtcttccag aagctgatgc      6900
     gacaatacgg aatttcacac acactgaccg cagttcattc gccgcaagcc aacgcttccg      6960
     agcgagtaaa ccgttctgtt acttccggta tccgatcgta tgtttgccct aaccaaaaga      7020
     actgggatga gagtctgcat aaaatttgtt gtgcgttgcg ttcttcggtg cacagtagta      7080
     ttggaaccac accctattac ttagctttcg gacagcacat gataacagac ggacctacgt      7140
     attccttgct aagaaagttg aacctgctgg acgaccgctc cttaatgtat aacagacaag      7200
     attcgttcga gataattcga gaggaagcga ccaaaggaaa aggttcgtaa aatcaatgaa      7260
     aatcgatata acctacgctc tcgagaagtt tctttcgccg aaggacagga agtgtttcgg      7320
     cgcaacttta aacaaagctg ttttcagacc ggatataatg ccaagatagg tccttcattc      7380
     gtcaaagccc gcgtaagaaa gaagatggga agatcatact atgaacttga agatccacaa      7440
     ggtcgacgaa ttggccttta tcatgcgaag gatattcgtc agtaacgtct ctacaggcgg      7500
     tatcagccta gggtatctgt acggaagtac cctagtctga ttgtaggagg ggggttttgt      7560
     aacggcgcc                                                              7569
//
ID   Gypsy-7_DTa-LTR repbase;    DNA;    INV; 1808 BP.
XX
AC   AFFI01006442;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DTa_;
KW   Gypsy-7_DTa-I; Gypsy-7_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1808
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01006442; Positions      61    1868.
XX
SQ   Sequence 1808 BP; 591 A; 405 C; 391 G; 421 T; 0 other;
     tgtagcgact aacgtaagac acagcctcaa cgtatactac gtttaacatg acgaaccaag        60
     ccttgccacc cagtctaaat ctaggttgcc gtaggtcaaa cagctgactc tgggttgcac       120
     cgaaaagctg tctcagctgt ttggtatttc cggaaaaaaa ccgacgcggc gtggctcgaa       180
     ttttagcacg ttcttctgaa aaaaaccatc gagcgatcaa gacgtatttc atccgatcag       240
     agaatcctcc ggggaaacgt gagtcaaagg agaaggcttt cctacatccg cgcctaacta       300
     gatcgcgctc cgcgcttgag tcgcgttttt ttaagcatac cctaggccgc gtgtcgcgaa       360
     aattgcgaca gtttacccac gttttgctcg gcagcacttg ccgcgaggag cctttcaacc       420
     gattcacgac gccctcccag agaaggattt tttctgcagc ttggaccaac ccgatcgcgc       480
     tcagcgcttg agtcgcgttt tccaatccaa gtcgcagccg cactacagcg aggattgcgg       540
     cgatttcccg tcatttggat ccaccagaca actgtcccag ggagcacccc acggataaaa       600
     atcggaaagt ggctgtcccg aggagcaccc tcgacagaag atcgcattgg tgtgcactcc       660
     tgaccaaaat cataaggcgg ttgcccaagg agtaccacga tcgacgtccg ccacggccat       720
     tggtagccgc ccacaagaat accgaaaatc tgacgcccaa atcagtcgcc gcggcaatat       780
     acatatgtat aacgcacata taggtgtaca tgtaagttat acgaactcca agattggtta       840
     cataaccttt acggtattcc taaccacgtg caggttgaaa attttccatc gcgtctaacg       900
     gacgaagagg gagaagaagg agaacgataa cggctttcgg agcactggaa cgaggtggaa       960
     ctggaacgtg gaacagcaaa gccgctacgc gaagagcaaa cgagaacaag aatacaaaag      1020
     gagacaactc aacacggaga gaataaccta acaaaagagg aataaaaaca agataaacga      1080
     agttaaacaa acccgaatct agtgaaaccc catggttaaa tagaaataat gtgaaaatta      1140
     aggaagtgct gaaaagagag aaatcaaaaa tagttataaa tttgtcaaaa ggtgaaactc      1200
     ctaagaaaat accgaaatct cggctgtgcg cgatttaaaa caaagaaatg aagtaaagcc      1260
     aaaataaaat caattaaatc taaagttttg cgaatgcgaa ataacgaagg aagagaaaca      1320
     tgaagtttga gcccaggccg acaggtcaaa agaaagaaat ttaaagtgaa gagaagagaa      1380
     tttgcactga aagaattata atttttttgt tttgttcttc ctacccttcc agggaagttt      1440
     ctctttataa ttttatatct aatatctaat taacgaaaac gacggagtga atttaatgta      1500
     attttacaag agcgctcaat aatctggttt attatttctg ccgacaaatt tatgggtaat      1560
     tgtcccactc cctccacagc caacctacgc caagtggttg acctcttcgc caaggagaat      1620
     gctgggtaag tcgttataag agataatgtg acagaaattt accatattat ttgagctcaa      1680
     tttctctatg gcctttgaac ccataagaga aatcaaatga aataatatct atgttaaata      1740
     atgcaagggt atcacaaacc caaggccagc cgttaatgct ttcttttctt tcgggtttct      1800
     tgcgccca                                                               1808
//
ID   Gypsy-7_DVir-I repbase;    DNA;    INV; 6469 BP.
XX
AC   scaffold_10188;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DVir_;
KW   Gypsy-7_DVir-LTR; Gypsy-7_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-6469
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_10188; Positions    8353    1885.
XX
CC   Positions [5460-5948] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1487..2686
FT                 /product="Gypsy-7_DVir-I_2p"
FT                 /translation="MEWSELAKKINNFKDKFEKSYKWVNKNAPIRVETLIH
FT                 HINILVLNYNNIVQLYLSKENRLTEQHVNHQCKKIIKSLGTRISNISTRHN
FT                 IVIDIPTDLKLMATFDPDIEADSDIEPLELTEPNMAVNQVALDREYVRQVS
FT                 STIPEFDGKKLSLARFLTALRLVDRTKGTQEDLAVEVIKSKIIGPILYKVQ
FT                 NETSIIGTINKLNTNIKGESTDVIKAKLLNIKQKGKSASQYTTENDSLRKQ
FT                 LEAAYIDDGLDFDNAEKFSTKETISAMTKNCEYEKLRIILETGNFSNFNDA
FT                 MGKYIQCSTEMTGCPSTILYYKGRNDRGNYSRNNQRGRDKSRGNSNFHYNG
FT                 NNNNRGNFRGNYRGGNRGRNNSNRGGYQNQNSNNRGNVRVTQGNSENQQTP
FT                 SDVQSQ"
FT   CDS           2725..3870
FT                 /product="Gypsy-7_DVir-I_1p"
FT                 /translation="MFVKIKNERTGKSITLLVDTGADISILKENTDIFENV
FT                 NETITTQISGIGEGIIPSKGLAFIELTTGKYIIPHNFHLVEQNFPIPSDGI
FT                 LGIDFIKQYNCQLDFTQSGDSLILRPNKLNYPIRLKILHTCDNNATVLPAR
FT                 SEVVREIQIPSIQNQILILNQEIDEGIYIANTISNHKNTYVRNINTTNANK
FT                 IVNLNKIKYETLNNYDIVKETNEGRDNFVMEKLIKNFPPLFKNQLKDLCTR
FT                 YTDIFGLETESITTNNFYKQKLRLKDDEPVYIKNYRSPHSQVQEIQAQVQK
FT                 LIDDKIVEPSASEYNSLLLLVPKKSLPDSDKNKWRLVIDYRQINKKLLSDK
FT                 FPLPRIDDILDQLGRAKYFSCLDLMSAFTKSNSKKVLEI"
FT   CDS           4386..6302
FT                 /product="Gypsy-7_DVir-I_3p"
FT                 /translation="MALINPTLLQYPDFAKEFCIITDASKQACGAVLTQNH
FT                 NGLQLPIAYASRSFTKGESNKSSTEQELAAIHWAITHFRPYIYGNHFTVKT
FT                 DHRPLTYLFSMVNPSSKLTRMRLELEEYNFTVEYLKGKDNFVADALSRIAI
FT                 KQLQEITGTIHKVTTRYQSRQNSCAGKYQVELPRQSTEKASQPNVYEVINN
FT                 DEVRKVVTLHIKDTLCFFKHGKKIIARINIGDLYTNGNIDLGQLFPRLENE
FT                 AGILKISQLKMAPWENIFDTISIDNFKNMGNKILTKLRVALLNPVTTITNN
FT                 KEKEAILSTLHDDPKQGGHTGITKTLAKVKRHYFWKGMTRDSTEYIRKCHK
FT                 CQKAKITKHSKTPLIITDTPVHAFDRVIVDTIGPLPKSDNGNEYAITLICD
FT                 LTKYLVAIPIPNKNASTVAKGIFQSFILKYGPMKTFITDMGTEYKNSIIND
FT                 LCKFMKIDNITSTAHHHQTVGTVERSHRTFNEYIRSYISVDKTDWDVWLQY
FT                 FVYCFNTTPSTAHNYCPYELVFGKTCNLPKYFNSIANIEPIYNIDDYAKES
FT                 KYRLEVAYKRARNMLEFNKMNQKKRYDLNSKELKLSIGDKVLLKNEVGHKL
FT                 DFKYTGPYRVEKIEDRDNIVISGNKNKTQTVHKDRLKIFNS"
XX
SQ   Sequence 6469 BP; 2595 A; 1153 C; 1099 G; 1622 T; 0 other;
     tggcgaccgt gacaggacgt cacaaaaaca tgaaaacgtt aagatacata acttcaactc        60
     taattttaaa ccagtcataa aagtaattaa agaaagtaaa ttaaaaggaa ataacactca       120
     aaaacaactg aaacaacgag gcatctggaa cggcacacac cctggagaat caaaaattaa       180
     ctgagtgagt acagggggca tgagctctaa aaatacttta aagctaaaaa ggcgcagtgg       240
     cattaaagag cggatcaggc aaagaaagtc tgagatggta agactcttat ataagtccca       300
     aacccaatac cttgggaaac tgcagtcaag ctacatgacg aactcaaaca tcttgagtcg       360
     ttaaacaaag taaagaaccc tccctgtccc tcagaggaaa aacttattaa tccagataca       420
     catcgaccac agccacaacc gatcccgaga aggcaacgtg aatgcccagc agactgcgag       480
     ggaccgcttt acagccaaca ttgcctgggc acatgtcagc ggccacccac gagtaaaaac       540
     tagtacgaga ggcaaaccgc cccttgtacc aacgctggaa caagaagaag tacgagaggc       600
     agaccgcccc ttgtaccaac gctggaaaac accaagggtg aactgaccga cagcgccaca       660
     gagggcgcac agcaaaaaaa agtttataat tataattatt attaaaatat ttgtaaaact       720
     attgtaatgc ccgacgacaa ttgagtcgac cggcaagacg tttggcccgt aaagccatcg       780
     aaatactagg caggacaaaa tgtacattca gtaaaaactg aattaatatt aaatttctcc       840
     ccgcccacgg gcgtaaatac aaaaaatttt aaatataaac tcaaactaca aaccttataa       900
     agttaatgaa tagcgttaac aaaactataa gttcatatat aaatcaagta tatattaaga       960
     ataacaaccc caaatatggg tttggtagac gttaagactg ttgactcgac ggctaacgta      1020
     ataaataaag ttgaggtcag caacacagat gtaaaattga taacaatttt tgtcgttatg      1080
     atatttgtca tattagtagg acatctattg tacaaattat acacgtatca taataaatgc      1140
     ataaaaaaga gataccagag tcacgcaaat gacctggata aaatctaaat ttttcttgaa      1200
     caatgataag cgacaaaata aaataaataa ataaaatgaa atttcgagaa atatatatat      1260
     attcttatta ccagaaatgc ctaataataa gtttgcgata gaagtatact tagaagcaat      1320
     atataatagc gacgcagact ttagaattcg tgcattgaat attctacaac aataagataa      1380
     aaggcataat tttaaataca ctgccatatg ttggcattaa agaaatagtg gtccagtgga      1440
     cggcgagtgc ccaattataa tggtaaaact tcataaatag agaactatgg aatggagtga      1500
     attagcgaaa aaaataaata atttcaaaga taaattcgaa aaatcttata agtgggttaa      1560
     taagaacgca cctataaggg ttgaaacgct aattcaccac ataaacatat tagtgctaaa      1620
     ctataataac atagttcaac tttatttaag taaagaaaat aggctcacag agcagcatgt      1680
     aaatcatcaa tgtaagaaaa taatcaaatc acttgggact agaatatcga atatcagcac      1740
     taggcacaac atagtaatag atatcccaac agatttaaaa ttaatggcaa cctttgaccc      1800
     tgatattgaa gctgatagcg acattgagcc acttgaatta acagaaccaa acatggcagt      1860
     aaatcaagtg gccttagacc gcgaatatgt aagacaggta tcgtctacaa ttccggaatt      1920
     tgatggcaaa aagctatcac tggccagatt tctaacggct ttaagactag tcgatcgtac      1980
     taaaggtaca caagaagact tagccgtaga agtcataaag tctaaaataa ttggcccaat      2040
     tttgtacaaa gtacaaaatg aaacatccat tattggtact ataaataaat taaataccaa      2100
     tatcaaaggc gagtcaactg acgttatcaa agctaagttg cttaacataa agcagaaagg      2160
     caagtcagcc tcgcaatata caactgaaaa tgacagtttg cgtaagcaac tggaagcagc      2220
     ctatattgac gatggactag attttgataa cgcagagaaa ttttctacta aagaaacaat      2280
     atctgccatg acaaagaatt gcgaatacga aaagcttcgc ataatattag aaacgggcaa      2340
     tttcagcaat ttcaatgatg ctatgggtaa atatatccaa tgcagcactg aaatgactgg      2400
     atgcccaagt acaatattgt actacaaagg cagaaacgat cgtggaaatt acagccgtaa      2460
     caaccaaaga ggtagagaca aaagccgcgg caatagtaat ttccactata atggtaataa      2520
     caacaatagg ggtaatttca gaggaaatta ccgaggtggc aaccgaggta gaaacaattc      2580
     aaaccgaggt ggctaccaaa accagaacag taacaataga ggtaatgtcc gagtaactca      2640
     aggtaactcg gaaaaccaac agaccccctc agatgttcaa agccaataaa tggctcaata      2700
     aaaaccatca accttaatct tagcatgttt gtaaaaatta agaatgaaag aacaggtaaa      2760
     tcaattacac tgttagtaga tactggtgca gatatatcca tattaaaaga aaatacagat      2820
     atattcgaaa atgtaaacga aacaattact acccaaatat cgggtattgg cgaaggcata      2880
     attccttcaa aaggcttagc ctttatagaa ctcactacag gcaaatatat aattccacat      2940
     aactttcatt tagtcgaaca aaacttccca ataccgagtg atggcatact aggcatagat      3000
     tttataaaac aatataattg ccaactagat ttcactcaaa gtggcgactc acttattctt      3060
     cgcccaaaca agttaaatta tccaattcga ttaaaaatac ttcatacttg tgacaataat      3120
     gccacagtac tcccagctcg ttccgaagtt gtccgtgaaa tacaaattcc ctcaatacaa      3180
     aatcaaattc ttatattaaa tcaagaaatt gatgaaggaa tttacatcgc aaacacgata      3240
     tccaatcaca aaaatacata tgttcgtaat ataaatacaa caaatgccaa taagatagta      3300
     aacttaaata aaataaaata tgaaactttg aacaattatg atatagtaaa agaaaccaac      3360
     gaaggaagag acaacttcgt tatggaaaaa ttaatcaaaa actttccacc tttatttaaa      3420
     aatcaattaa aagatttatg caccagatat accgacatat tcggattaga aaccgaatcg      3480
     ataacaacta ataattttta caagcaaaag cttagattga aggatgatga gcccgtatac      3540
     ataaaaaatt atagaagtcc tcacagccaa gtacaagaaa ttcaagccca agtgcaaaaa      3600
     ctaatagacg acaaaatagt cgaaccatca gcctcagagt ataatagcct acttttatta      3660
     gttccgaaga agtcccttcc ggactctgac aagaacaaat ggcgattagt aattgactat      3720
     cgtcaaatta ataaaaagct attgtccgat aaatttccgc taccgagaat tgatgatatt      3780
     ctagatcagc taggtagagc caaatatttt tcatgcctag acttaatgtc ggctttcacc      3840
     aaatcgaact cgaaaaaagt tctagagata taacgtcatt ttcaacgagc aatggctcgt      3900
     atcgctttac gcgattacca tttggcttga aaatagcccc aaaatccttt caaagaatga      3960
     tgacaatagc attttctggt cccggcctgg ttcaggcctt cctgtatatg gatgatctga      4020
     tagtaatcgg ttgttccgaa aaacatatgg ttaaaaattt aactgaagtt tttgacaaat      4080
     gtaggaaatt caacctgaaa ctacatccag aaaaatgttc atttttcatg catgaagtca      4140
     catttttggg acataaatgc actgataaag gaatcttgcc agacgataaa aaatacgacg      4200
     tcataaagaa ctacccagtc ccacatgatg cggacagcgc taggcgattc gttgcatttt      4260
     gcaattacta taggcgcttt attaaaaatt ttgccgacta ttcacgtcac ataacaagat      4320
     tatgttaaaa agacgttaag ttcgaatgga catctgaatg ccagaatgcc ttcgatcacc      4380
     tcagaatggc tcttataaac ccaaccttgt tacaatatcc agatttcgct aaagaattct      4440
     gcataataac tgatgcaagt aagcaagcgt gtggagcggt tttaactcaa aaccataatg      4500
     gactccaact tccaattgca tacgcatcaa gatcctttac taaaggagaa agtaacaaga      4560
     gttctactga gcaagaatta gcggctattc attgggcaat aacgcatttc cgaccatata      4620
     tttatggtaa ccatttcacg gttaaaactg accatagacc gctaacctac ttattttcaa      4680
     tggtaaatcc aagttcaaag ttaacacgta tgaggcttga attagaggaa tataatttta      4740
     cggtagaata tctgaagggt aaagataatt tcgtagccga tgcgttatca agaatagcca      4800
     taaaacagct acaggaaata acagggacaa tccacaaagt cactacaaga tatcaaagta      4860
     gacaaaattc ctgcgcagga aaatatcagg tagagttgcc aaggcaatct acagaaaaag      4920
     cttcacagcc caacgtatac gaagtcatta acaatgacga ggtacgcaaa gtagtgacct      4980
     tgcatataaa agatacgctt tgtttcttta aacatggcaa gaaaattatt gcaagaatta      5040
     acattggtga tctatataca aatggaaata ttgacttagg tcaactattc ccaaggctcg      5100
     aaaatgaagc cggtatattg aaaataagcc aattgaaaat ggcaccgtgg gaaaatatct      5160
     ttgatacaat ttcaatagat aatttcaaaa atatgggcaa taaaatattg actaaattaa      5220
     gggtagcgct actcaacccg gtgaccacaa taacaaataa taaagaaaaa gaagctatat      5280
     tgtctacact acatgacgac ccaaaacaag gaggtcatac tggcattaca aaaaccttgg      5340
     ccaaggtcaa acgacattac ttttggaaag gtatgactcg agatagtact gagtacatac      5400
     gtaaatgtca caaatgccag aaagctaaaa taactaagca tagtaagacc ccattaatta      5460
     taactgatac acctgtacat gcgttcgata gggttatagt ggacacaatt ggtccgctac      5520
     ccaaatctga taatggtaat gagtacgcaa tcacattaat ttgtgacttg actaaatacc      5580
     tagtcgcgat accaatacca aacaaaaacg ctagtacagt agccaaaggt atattccaat      5640
     cttttattct aaagtacggt ccaatgaaga cgttcattac ggacatggga acagaataca      5700
     agaactcaat tataaatgat ttgtgcaagt ttatgaaaat agacaacata acatcaactg      5760
     cacatcatca ccagacagtt ggaacagtcg aaagaagtca cagaactttt aacgaataca      5820
     tacgatctta tatatcagtt gataaaactg attgggacgt atggctccaa tactttgtct      5880
     attgttttaa tacgacccct tctacggcac ataattattg tccgtatgaa ttagtatttg      5940
     gtaagacatg taatctacca aaatacttca atagcatagc aaacatagaa ccaatatata      6000
     acatagatga ttatgctaag gagagtaagt atagattaga agtagcatac aaaagagcaa      6060
     gaaatatgct agaatttaat aagatgaatc aaaagaagcg atatgactta aatagtaagg      6120
     aattaaaatt atccatagga gataaggttt tattaaaaaa tgaagtagga cataaactag      6180
     attttaaata cacagggccc tatagagtag aaaaaataga agatagggat aatatagtta      6240
     tttctggaaa taagaataaa acgcaaacag tccataagga cagattaaaa atttttaatt      6300
     cataatcaag catgcaaaaa tacaaaaaaa aatatatata tataaaaaaa aaaaaaaaaa      6360
     caacaaaata aatatatata aaaaaaaaaa aattttaaaa taataaaaat aaataattat      6420
     taaggaaaat aactccattg tattacgtta ttttttaaaa ggagggaga                  6469
//
ID   Gypsy-7_DVir-LTR repbase;    DNA;    INV; 390 BP.
XX
AC   scaffold_10188;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DVir_;
KW   Gypsy-7_DVir-I; Gypsy-7_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_10188; Positions    1884    1495.
XX
SQ   Sequence 390 BP; 128 A; 90 C; 76 G; 96 T; 0 other;
     tgtagcatgc gtacatatgt atatacatac atatgaataa ggctgcaaca acttttggtt        60
     atgccaacag aatgcaaaca taagcagcga ctttgtcgca gcgcgcctaa cgataagtgc       120
     cctctgcgca tattcaagtg cagacgaaat atgatcagca cttgataaca acgaccgccc       180
     aaatagctaa gtcagcgttc tcacgcttga ccgtcgttgt gtatacgcat gactctctct       240
     gactctcttg ctgtatataa taagccaaaa aaccatgtat gtaaaacggc tgctcactgc       300
     ttgacggtgg acagctcgaa ctcgaaaaga aaacatataa taaagaacca tcaaggaaga       360
     cggacgtctt ttaatcttgg aaccattaca                                        390
//
ID   Gypsy-7_DWil-I repbase;    DNA;    INV; 5080 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DWil_;
KW   Gypsy-7_DWil-LTR; Gypsy-7_DWil-I.
XX
NM   Gypsy-7_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5080
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-5080
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
CC   'TACGT' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1005..5078
FT                 /product="Gypsy-7_DWil-I_1p"
FT                 /translation="MELDEVMALRVADLRNKLAELNLSTVGRKRDLQNRLL
FT                 THYDIQDQDSEDEEVESVVTARGELPINNCSRSWYTLKDVEGSVSYFSGSG
FT                 SPDIDSWVQEIEECAITVQWDKLQTFIYAKQLLAAAAKSFIRSQHGINNWE
FT                 ILKAALRKEFGSKRSAAEIHRILSQRSQKREETLHEYLYALMEIAKPVNLD
FT                 DESLIEYFVKGIPDSQVNKAILFQARNLQELKFQIETYQKVRASHKSLNKF
FT                 EAQSGGKINQGKIIDTSKNRKCYSCGDTSHIRRDCPKNDQKCFKCGKVGHR
FT                 MAQCKLENPIKYERNTNVVENEDVVIQPSSEFTPSGLELKDIVYSNVIFKG
FT                 LVDTGAGLCLMRRNIYFMIGSKPLLGGARHLTGIGDSKVLTFGSFIIPVKV
FT                 DGLVMNIEFHVVPDQDISFDAILGRTILNTVNINVTANGSRFAMRNDIEVC
FT                 HTHSMSKREQNESDIQWAGDIGNIFITNIEDRDKSPDINLSHLNHLIKGEV
FT                 EKLIRNYQPKRNANAPVSMKIILSDEIPVYQHPRRLALCDQEIVDKQIQEW
FT                 LAEKIIKTSTSEYASPVVLVSKKNGQKRLCCDYRKLNEKILRDNFPMAHMD
FT                 SVLEKLQGANMFSTLDLTNGFFHVPVVESSQKYTSFVTQSGQYEFLYVPFG
FT                 ISNSPAVFTRFIMVVLRDLIKANDCVVYMDDIIIPSTGIDDGLAKLKRVLD
FT                 VSAKNGLRINWSKCQMLQRKVLFLGYDVENGTITPSKEKIRAVSNFPIPNS
FT                 KKGLQRFLGLTSYFRKFIERYAVIAKPLSDLMRKDSKFEFKDIHKLAFEEL
FT                 RAALTKEPVLKLFNPKLQTEIHADASKYGFGAALLQKHPEDNSFHPVEYMS
FT                 RKTKLCEERYHSYELEVLAIIGALTKWRVYVLGSRFTIVTDCNAFAMTMKK
FT                 KDVPLRVARWAMYLQDFDYVIVHRSGTQMRHVDALSRFACFMLVEDTIKHR
FT                 LKEAQLQDEWTKAVRTLVEKESYKDFYIENEILFKDPNCELIVVPSAMEHE
FT                 IIRLAHTQGHFSVKKTQDLIEKSYYIPELRDKVIRVVHSCVECIVINAKAG
FT                 KREGYLTSIEKGDKPLCSYHIDHVGPMELTNKRYNYLLVIIDGFSKYVWLY
FT                 PTRSTGVDEVIRCLEVQATNFGNPVRLISDRGAAFTSHIFKKYCEDHDIVH
FT                 LLITTGVPRGNGQVERIHKIVIPMLAKMSLDNPASWYKYVGKVQQIINDTA
FT                 PRSTKIAPFKILTGIDMRRSEDVNLKELLDDLLIEELAEHRKKIRMEAVEN
FT                 IKQIQEENKKSANLKRKEGKRFKINDLVAIKRTQYGVGLKLKGKYLGPYKV
FT                 TAIKNHGRYEVEKVGQAEGPNRTSTVSEYMKLWGPSFGSNVQSGGP"
XX
SQ   Sequence 5080 BP; 1718 A; 859 C; 1209 G; 1294 T; 0 other;
     tttttggggg ctcgcccgaa atattgttta aagaaattaa catacaaaca tataacactg        60
     cgtgagtgaa agagacaaca aacaaagttc ttcgaagtga caaagcaaaa acttttgtgt       120
     cgtcatcatt gtgtaagagc aagcgagata ggctgtgcta aattgttgca taaaatcttt       180
     ggtgcccaaa tacgttacga cgcagacaat acacgcacga gcatgtttgg taacggacgg       240
     cgatcagtga atttttctag aacagtctag aaatatttgg acagagcgaa tcaagaagca       300
     aaacgtcagc agaggcagag gcaacccgtt ggcagaggcg aaccgttggc agaggcaacc       360
     cgttggcaga ggcaaagctg gacgtagcgt gaggcaaaac gtcagcagag gcagaggcaa       420
     cccgttggca gaggcgaacc gttggcagag gcaacccgtt ggcagaggca aagctggacg       480
     tagcgtgagg caaaacgtca gcagaggcag aggcaacccg ttggcagagg cgaaccgttg       540
     gcagaggcaa cccgttggca gaggcaaagc tggacgtagc gtgaggcaaa acgtcagcag       600
     aggcagaggc aacccgttgg cagaggcgaa ccgttggcag aggcaacccg ttggcagagg       660
     caaagctgga cgtagcgtga ggcaaaacgt cagcagaggc agaggcaacc cgttggcaga       720
     ggcaacccgt tggcagaggc aaagctgggc gtggtgtgtg ataaaacgtc agcagaggca       780
     gaggcaaccc gttggcagag gcagaagctg gacgcggcaa gagacaaaac gttagaagag       840
     gacagacaac ctgctggcag aaattaaacg aagacttcgt gggacaggag cggacttggg       900
     taaatttttt ggggactata tgtatatagt tctaacctta attgaattta ctaaaactaa       960
     ccttagcatt aattattggt attgaacaaa gaaaatattg taatatggag cttgacgagg      1020
     ttatggcatt gcgagtcgca gatttgcgaa ataagttggc cgaattgaac ctaagcacag      1080
     tgggaagaaa acgtgatcta cagaatagac ttcttactca ttacgatatt caagaccaag      1140
     atagcgagga tgaagaagta gaatcagtag ttacagctag aggcgaattg cccataaaca      1200
     attgtagtcg atcttggtac accttaaaag atgttgaggg cagtgtatcc tatttttccg      1260
     gctcaggtag tcccgacatt gattcgtggg tacaagagat agaagagtgt gctattacag      1320
     tacaatggga caagttacag acctttatat acgccaaaca gttgttagct gcggcagcta      1380
     aatcatttat tcggagtcaa catggtataa acaattggga gatattaaaa gcagcactgc      1440
     gcaaagaatt tggttcgaaa cgatcagcag ctgagattca tagaatatta tcgcaacgtt      1500
     ctcagaaaag agaggagact ttgcatgaat atttgtatgc tttaatggaa attgccaaac      1560
     cagtgaattt ggacgatgag agcttgatag aatactttgt aaagggcatt ccagactcac      1620
     aagtaaataa agctattcta tttcaagcca ggaatctaca agaactgaag tttcaaatag      1680
     aaacgtatca gaaagttcgt gcttcacaca agtcgttaaa caagtttgag gctcagtcag      1740
     gaggaaagat taatcagggt aaaataattg atacatctaa gaatcggaaa tgctatagtt      1800
     gcggtgatac atcacatatc agacgagact gtccgaagaa cgaccaaaag tgtttcaaat      1860
     gtggtaaagt aggacatcga atggcacagt gcaaactaga aaatccaatt aaatacgaga      1920
     gaaatacaaa cgtggtagaa aatgaagatg tagtaataca gccgtcaagc gaatttactc      1980
     cgtcagggtt agaacttaaa gacatcgtat attctaacgt tatatttaaa ggactcgtag      2040
     atactggcgc tggattatgt cttatgcgaa gaaatattta ttttatgatt ggatcgaaac      2100
     cgttattagg cggagctaga cacttaacag gaattggcga cagtaaagtg ttgactttcg      2160
     gtagttttat cataccagtg aaagtggatg gtttagttat gaacatagaa ttccatgtag      2220
     tgccagatca ggatataagt tttgatgcta tactgggtcg aacgatattg aacactgtca      2280
     atataaatgt aacagcaaat ggatctaggt ttgctatgcg caacgatata gaagtttgtc      2340
     acacccatag tatgtcaaag agagaacaaa atgagtcaga tattcagtgg gcaggagata      2400
     ttggaaatat cttcatcaca aatattgaag acagggataa gagtccggac ataaatcttt      2460
     cgcatttaaa ccatttgata aaaggggaag tagagaaatt aattcggaac taccagccaa      2520
     aaagaaatgc aaacgcacca gtaagcatga aaattatatt gagcgacgaa atacctgtgt      2580
     atcagcaccc gagacgttta gccctttgtg atcaggaaat tgttgataaa caaattcaag      2640
     aatggctagc agagaaaata attaaaacca gtacttctga gtacgcgtcg ccagttgtct      2700
     tagtctcgaa aaagaatggt caaaagcgtt tatgctgtga ctacaggaaa ttaaacgaga      2760
     agattcttcg tgataacttt cccatggctc atatggacag cgttttagaa aagttgcaag      2820
     gtgccaatat gttttcaact ttagacttaa caaacggatt tttccatgta ccggtagtag      2880
     aaagctctca gaaatacact tcttttgtta ctcagagtgg acaatatgaa ttcctgtatg      2940
     ttccttttgg tatttcaaat tcaccagctg tatttacaag attcataatg gttgtgttac      3000
     gagatttgat taaagcaaac gattgtgtag tgtacatgga cgacatcatc attccaagta      3060
     caggtatcga tgatgggttg gccaagctaa aacgcgtact agacgtgtca gccaaaaacg      3120
     gtttacgaat taattggagt aaatgtcaga tgctacaacg aaaagtccta tttttagggt      3180
     atgatgtgga aaatggtacc ataacgccga gcaaagaaaa gattagagct gtttcgaatt      3240
     ttcctatccc aaatagcaaa aaggggttac aaagattttt gggtctaact tcctatttta      3300
     gaaagtttat tgaaaggtat gcagtaattg cgaaaccatt gtccgattta atgcgtaagg      3360
     attctaagtt tgaattcaaa gatatacaca aactcgcttt cgaggaacta agagctgcgt      3420
     tgaccaaaga acccgtcctt aaattgttta acccgaaatt gcaaactgaa atacatgcgg      3480
     acgcttcaaa atacggattt ggggcagctt tgttacaaaa gcatccagag gataattcat      3540
     ttcatcccgt tgaatatatg agtcgtaaga caaaattgtg cgaagaaagg tatcattctt      3600
     acgaactcga agtgcttgct ataattggag cactaaccaa atggcgtgtt tatgtcctag      3660
     gatctcgatt caccatagtt actgattgta acgcatttgc tatgaccatg aaaaagaaag      3720
     atgttccttt gagagttgct cgttgggcta tgtatcttca agattttgat tatgttatcg      3780
     tacatcgatc aggtactcaa atgaggcacg tcgatgcgtt gagtcgtttt gcatgtttta      3840
     tgcttgttga ggacactatt aaacatcgat taaaagaagc tcagttgcaa gatgagtgga      3900
     ccaaggcagt aaggacgcta gtcgaaaaag aaagttataa agacttctat atagagaacg      3960
     agattctctt taaagaccct aattgtgagt tgattgtagt gccttcggca atggaacatg      4020
     agattattag acttgcacat acccagggtc acttttccgt caagaaaacg caagatttaa      4080
     tcgagaaatc atactatatt cccgaattga gagataaggt tattcgtgtg gtacatagtt      4140
     gtgtggagtg cattgttatt aacgcaaagg ctggcaaaag agagggatat ctaacttcga      4200
     tagaaaaggg tgacaaacca ctttgttctt accatattga tcacgtcgga ccaatggaac      4260
     ttacaaataa acggtataat tacttgttgg ttattataga tggtttttct aagtacgttt      4320
     ggttatatcc cactaggagc acaggcgtag atgaagtgat acggtgttta gaagttcaag      4380
     caacaaattt tgggaaccca gtacgattga tatctgatag aggcgcggct tttacatcgc      4440
     atattttcaa aaagtattgc gaggatcacg acatcgtgca tttattgatt accaccggag      4500
     taccgcgagg aaatgggcag gttgaaagga ttcacaagat tgttattcca atgctagcta      4560
     aaatgagttt agataatcca gcttcatggt ataaatacgt tgggaaagtt cagcaaatca      4620
     tcaacgatac ggcacctaga agtactaaga tagctccttt taagatccta accggtattg      4680
     acatgcgtag atcagaggat gtaaacctta aagaactact cgatgatctt ctaatcgaag      4740
     aactagcaga acacagaaag aaaatacgaa tggaggcagt tgaaaatata aaacaaattc      4800
     aggaggagaa caagaagtca gctaatctaa agagaaaaga gggaaaacga ttcaaaataa      4860
     atgatttggt tgctattaag cgtacccaat atggcgttgg tctgaaactt aaaggaaagt      4920
     atttaggacc ctataaagta acggcaatta aaaatcatgg tagatatgaa gtagagaaag      4980
     ttggacaggc ggaagggcct aataggacat caactgtatc ggaatatatg aaattgtggg      5040
     gaccgtcatt cgggtcgaat gtacagtcag gagggccgaa                            5080
//
ID   Gypsy-7_DWil-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_DWil_;
KW   Gypsy-7_DWil-LTR; Gypsy-7_DWil-I.
XX
NM   Gypsy-7_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-321
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
RN   [2]
RP   1-321
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-NOV-2021).
XX
SQ   Sequence 321 BP; 121 A; 43 C; 72 G; 85 T; 0 other;
     tgtgggaaat ggtattgaga gggagcaatc aaaagtaata gaagagagga gacaaacgcg        60
     tagtggccga acattctagt agtagtagag agagcagggc ataggatcat tatataagtt       120
     gagagagagc ttgttaaaga ggccgtggat cattcgcaaa gagactgtca actgagtcgc       180
     acgtcaaggt ccataattag tttagtgtta tttctataag tatgtttaaa ttctaacaat       240
     atattgaact cgattgtcat caaacaattc aaatattaat aaataaataa atatagtaac       300
     gatcgctaaa tcaacgctac a                                                 321
//
ID   Gypsy-7_HeAr-I repbase;    DNA;    INV; 4850 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4850
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5557-5557 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4699
FT                 /product="Gypsy-7_HeAr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDQSSSEPCGVGDHNGVQGLNSKIKSLQISSDSTNNN
FT                 AEAWKRWWQQLELYLLATGLDKAPEKRKIAILLHLIGEKGLNIFNTFNLTI
FT                 EKTTLAEVKSKFQNFFEPRRNITMCRHMFFTRKQQKSESIEGFLADLENKS
FT                 QDCEFGTLRESLIRDIFIANLHMDLAHVRQRLLQEPDLTYQKMRELATTLI
FT                 VAQQDAEKIVSSSNVEKSENVMHLRRRSRSRGDRRQRASPVGQQGSGAGKS
FT                 PNPERRSRTCSRCGQSHRYKCPAQGVKCRSCKSFGHFAKYCFKNKNISHLE
FT                 SFNSSHSHNNNQDYFVGMLNSHSSSQSHKSNCHLKSYNSHYKHVKSASTQS
FT                 PPPQFTYIHSQSQSGNDSGDDIGVIPERSHRDSYCQSEKLILKSYFNDDNG
FT                 DNVMSERSEKYLGDESSHQSEKLILKSYFKDDKGDNVMSERSEKYLGDESS
FT                 HQSEKSILKSYCHNSNKSCDSQSGYLNDEYRHMSEESPHTITTVTSPYHSQ
FT                 QVTSSFSQVNTVESKHKHNINNSKQSWNINVKVGHSQFNCIIDSGADLNIM
FT                 SKQTFVSLKRQQSQMSLVKCHINVTGFCGKSIPIMGKVNIKCNLILNNNTV
FT                 SENIVFIVANLVCPNVLGLPTCERLGIIKRVFSVSKQNFCQQILTQYNDVF
FT                 QGLGCLPPVCHLKLKPDAVPCVDPPRRVPFAMLGKLREELDRMESMQVIEK
FT                 VTKPTEWVNSIVITVKSSGQLRICLDPRNLNKNIIREIYPIKSIDEIRSQL
FT                 VGAVCFSHLDAFSGFWMLRLDEYSSNLCTFQTPFGRYKYLRLPFGINASSE
FT                 IFQRVMMNLFGDLEGVLIFIDDILVYGPSESIHNERLHKVMQRARQVNLKF
FT                 NKSKCKFLVSEVCFLGYVFSKDGARVDQEKVKAIVNMPTPQNVKELQRILG
FT                 MINYLGPFISNLSEKTQILRNLLKKDAVWSWDENHNKCLKSLIDEITKSPV
FT                 LAHYNPNIPLVLSVDSSKSALGAVILQNNKPIAYSSKTLTTTQSRYAQIEK
FT                 ELLAIQFGCEKFHQYVYGHRVTVHTDHKPLVYLFDKPLHDVPARLQRMMLT
FT                 LQKYDLKVIHVPGKQMFISDTLSRAALKDYYIPENESEITCHVNLMYSNLA
FT                 VTKDYSTKLSQHTNKDESLQLLKKYYYEGWPKSKSKVSQLVKPYWNIQAEI
FT                 HVVKDLLFKGSKLIVPQSMYKEMLDKIHEGHQGINKCLKLARDSLYWPNMS
FT                 VDIKNLVEQCLICAKFKPCNQKEPLQNFEINKYPWQQVGIDLMYIDNLSYL
FT                 IVTDYYSKYIEIALLNKNSTAKNVITHLKSIFARHGIPLSLVSDGGPPFQS
FT                 LEFKNFLHEWDIEHIITSPYHAQSNGQAESSVKNCKNMLKKCKENSSDPYI
FT                 ALLQYRNTPKNNLPSPAQLLMSRNLRDNVPKSYKKLKPKVVKFKDYKECVN
FT                 KNNVNKSKYYNRNSKPLSLLYPNDHVYFKRKPNYNWEHAIVKQRLANNRSY
FT                 VIEDVNGVRYRRNRIHLRHKYSPMLSNSSSSSSSSQGREDGDSQKAGPQEL
FT                 LSQSSSSQIVTRSGRFVKPSRRLIEEID"
XX
SQ   Sequence 4850 BP; 1720 A; 806 C; 897 G; 1427 T; 0 other;
     tggtgtcaga agtcaagaag aactcaagtc aaaaaagtcg aagtctggaa gacagtcggt        60
     cgcgaaaatg gaccagtcga gttccgagcc atgcggcgtg ggcgaccata atggcgtcca       120
     aggccttaac agcaaaataa aatcactgca aatttcgtca gattccacaa ataataatgc       180
     ggaggcgtgg aaacgctggt ggcagcagtt ggagctgtat ctgttggcca cgggtttgga       240
     taaggcaccc gaaaagcgta agatagctat cttgttgcat ctcataggtg aaaagggctt       300
     aaatatattc aatactttca acctcaccat tgagaagacc acgcttgccg aagtcaagtc       360
     caaatttcaa aatttttttg agcccagaag gaacataacc atgtgccgtc acatgttctt       420
     caccagaaag caacagaaat ccgagtcgat cgaaggattc ctagcagatc tggagaacaa       480
     aagccaagat tgtgaatttg gaacactcag ggaatcgctc atcagggata ttttcattgc       540
     aaatctgcat atggatttag cgcatgtacg tcagagacta ctccaggaac ctgatctgac       600
     atatcagaag atgcgagaac tggcaacaac actgatcgtc gcacagcagg atgctgaaaa       660
     aattgtcagt agttccaacg ttgaaaagtc agaaaatgtc atgcatctac gtcggaggag       720
     ccgtagtcga ggggatcgtc gacagcgagc ttcaccagtc ggtcagcagg gttctggcgc       780
     agggaagtct cccaaccctg aaaggcgctc gaggacgtgt agccgctgtg ggcaatctca       840
     ccgctacaag tgcccagcgc aaggagtcaa atgcaggtca tgtaaatcat ttggtcattt       900
     tgctaaatat tgcttcaaaa ataaaaatat cagtcattta gagtcgttta attcaagtca       960
     tagtcataat aataatcaag attattttgt tggaatgttg aatagtcata gctccagtca      1020
     aagtcataag tctaattgtc atttaaagtc atataacagt cactataaac atgtcaagtc      1080
     agcaagcaca cagtctccac caccacaatt tacatacata catagtcagt cacagtcagg      1140
     gaatgattcc ggtgatgaca ttggtgtcat tcctgagaga tctcaccgag actcatattg      1200
     tcagtctgag aaattaattc tcaagtcata tttcaatgat gataatggtg ataatgtcat      1260
     gtctgagagg tctgaaaagt acctcggtga tgaaagcagt caccagtctg agaaattaat      1320
     tctcaagtca tatttcaaag atgataaggg tgataatgtc atgtctgaga ggtctgaaaa      1380
     gtacctcggt gatgaaagca gtcaccagtc agagaaatca attctcaagt catattgtca      1440
     taattcaaat aaaagttgtg atagtcaaag tgggtatctt aatgatgagt acagacacat      1500
     gtctgaggaa tcacctcaca caatcacaac agtcacatca ccatatcaca gtcaacaagt      1560
     cacatcatca tttagtcagg tcaatacagt cgagtcaaaa cataaacata acattaacaa      1620
     tagtaaacag tcttggaaca taaatgttaa agtaggtcat tcacaattta attgtatcat      1680
     tgattcagga gctgatctta acataatgtc aaaacaaact tttgtttctt taaaacgtca      1740
     acaaagtcaa atgtcacttg tcaaatgtca cataaatgtc acaggatttt gtggcaagtc      1800
     aatacccatt atgggaaaag tcaatattaa atgcaattta atattaaata ataacactgt      1860
     cagtgaaaat atagtgttca tagtcgcaaa tttagtatgt cccaatgtcc taggtcttcc      1920
     tacttgtgaa aggttaggaa taattaaaag agttttttca gtatctaaac aaaatttttg      1980
     tcaacaaatt ctaacacaat ataatgatgt ttttcagggt cttggctgtc tacctcctgt      2040
     ctgtcacctg aaactcaaac ctgatgcagt accatgcgtg gatcctccca ggagagtacc      2100
     atttgcgatg cttggaaagc tacgcgagga gttggatcgc atggagagca tgcaagtcat      2160
     tgaaaaagtc actaagccta cagaatgggt gaatagcata gtaattacgg tcaaaagttc      2220
     aggtcagtta cgaatttgtt tagatcctag aaatttgaat aagaatatca taagggaaat      2280
     ttatccaata aagtcaattg atgagataag atctcaatta gtaggagctg tttgtttttc      2340
     tcatttagat gcattttcag gtttttggat gttaagatta gatgaatata gttctaattt      2400
     atgtaccttt caaacaccat ttggcagata taaatattta agattacctt ttggcataaa      2460
     tgcatcatca gaaatatttc aaagagttat gatgaatttg tttggtgatt tagaaggagt      2520
     cttgatattc atcgatgaca ttctagtcta tggtccaagt gagtctatac ataatgagag      2580
     attacataaa gtaatgcaaa gagctcgtca agttaattta aaatttaaca agtccaaatg      2640
     taaatttcta gtttctgaag tctgtttttt aggttatgtc tttagtaaag atggtgcaag      2700
     ggttgaccaa gaaaaagtaa aagcaattgt caatatgcct acaccacaaa atgtcaaaga      2760
     attgcaaaga atattaggta tgatcaatta tttaggtccc tttattagca atttgtcaga      2820
     aaaaactcaa attttaagaa atcttttgaa aaaagatgca gtctggtctt gggatgaaaa      2880
     tcataataaa tgtcttaaga gtttaataga tgaaattaca aagtcaccgg ttttagctca      2940
     ctataacccc aatattccat tagtcttgtc agtagattcg tctaagtcag cattgggagc      3000
     agtcatttta caaaataata aacccattgc ttatagttca aaaacattaa ccacaactca      3060
     gtctaggtat gcacaaattg agaaagaatt gcttgcaatt caatttggtt gtgaaaaatt      3120
     tcatcagtat gtatatggtc atagagtcac agttcataca gatcataaac cattagtcta      3180
     cttatttgat aaaccattac atgatgtacc agctaggtta cagcgaatga tgttaacttt      3240
     acaaaagtat gacttgaaag tcatacatgt cccaggtaaa caaatgttta tatctgatac      3300
     cttgtctaga gctgccttaa aagattatta tataccagaa aatgagtcag aaataacttg      3360
     tcatgtcaat ttaatgtatt caaatttagc agtcactaaa gattacagca caaaattgtc      3420
     acaacatact aataaagatg aaagtttgca attgttaaag aaatattatt atgaaggttg      3480
     gccaaaaagt aaaagtaaag tcagtcaatt agtcaaacca tattggaata tacaagctga      3540
     aattcatgtc gtaaaagatt tgttgttcaa aggttcaaaa ttgatagtac cacagtctat      3600
     gtataaggaa atgttggata aaattcatga aggtcaccaa ggtataaaca aatgtcttaa      3660
     attagctaga gattctttat attggccaaa catgtcagtt gatatcaaaa atttagtaga      3720
     acaatgtctt atatgtgcaa aattcaaacc ttgtaaccaa aaagaaccat tacaaaattt      3780
     tgagattaat aagtatccat ggcaacaagt tggtattgat ttaatgtata ttgataacct      3840
     ttcttattta attgttacag attattactc taaatacata gagatagctt tgttaaataa      3900
     aaatagtaca gccaaaaatg taattacaca tttaaagtct atttttgccc gtcatggtat      3960
     acctttgtca ttagtgtctg acggtggacc tcctttccaa tctttagaat tcaagaattt      4020
     tttacatgaa tgggacatag aacatattat tactagccca tatcatgcac agtcaaatgg      4080
     tcaagcagaa agttcagtca aaaattgtaa aaatatgttg aaaaaatgta aagaaaattc      4140
     gtctgatcct tatatagcct tattacaata tagaaataca cctaaaaata atttaccatc      4200
     cccagcacaa ctgttaatgt ctaggaattt aagagataat gttccaaagt catataaaaa      4260
     attaaaacca aaggttgtaa aatttaaaga ttacaaagaa tgtgtaaaca agaataatgt      4320
     caataagtca aaatattata atagaaattc taagcctttg tcattgttgt atcctaatga      4380
     tcatgtctac tttaaaagaa aaccaaatta taattgggaa catgccattg tcaagcaaag      4440
     gctggcaaat aataggtcat atgtcattga ggatgtcaat ggagttaggt ataggagaaa      4500
     tagaattcac ttaaggcata agtactctcc tatgctatcc aactcgtcgt cgtcgtcgtc      4560
     atcgtcgcag gggagagagg atggtgacag tcagaaggct ggacctcaag aactcttatc      4620
     tcaatcctca agtagtcaaa ttgtcacacg ttcaggtcga tttgtaaagc cttctcgtag      4680
     gctaatagaa gaaatagatt aagtatataa ttgtaatcta aattaagtca taattaagta      4740
     aaaacctttg tctatcataa ctatgtataa taaagtcaat ttttgtcaag tcagtccata      4800
     gtcttaagtc tattgtttgt caagggttaa tttaaactta acagggggga                 4850
//
ID   Gypsy-7_HeAr-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-187
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5545-5545 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 187 BP; 58 A; 33 C; 29 G; 67 T; 0 other;
     tgttgtaaca tcactaatta gtaatactaa ttagtacgtc actaatataa taacttccgc        60
     tatgatctgt catctgtctt tttccatatc cttcgtatgg gtcgactatg taactgtggt       120
     acagtgaatg tgtgttgtga aataaaactc aagtaaccca agatcaagga ctttcattta       180
     tattaca                                                                 187
//
ID   Gypsy-7_HMM-I repbase;    DNA;    INV; 3446 BP.
XX
AC   CAEZ01009750;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_HMM_;
KW   Gypsy-7_HMM-LTR; Gypsy-7_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3446
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009750; Positions   16143   12698.
XX
CC   Positions [2294-2797] - Integrase core
CC   'TAAAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..1272
FT                 /product="Gypsy-7_HMM-I_1p"
FT                 /translation="MSHFGVLSQFDHNLQTWQIYKGHLTQWFIANDVTEAT
FT                 DSSGVKRRAILLSALSEATYQLAINLALPKEIQAVPFEGILQLLDDHFTPK
FT                 RCGFGERFKFYNAAQHEGENYSQWAARLRGITAHCGFLNVEEALRDRFIMG
FT                 MLPGAEREKCFAQDHQELTLAKAVELADSVRSARAASSSGTTEGPHMARVE
FT                 TLFKISDSEKVSCTVCGFKNHTSKQCRFANYRCKKCNVKGHLRRMCKKINF
FT                 VTNETVHENGDDGELYNIRTANGEPMVETVRVQGLPMKFQIDSGSAVTAIS
FT                 ETTYLKYFHIVKLFKSCKRLLTYNGNNIKYIGIAKLCFTYMNKTHTLNVYI
FT                 IRNGGPPILGRDFISTFKLVMLPLNYCSKATNISELLQLQYPSVFSDDLGT
FT                 SKKYKINLKVKKRC"
FT   CDS           1694..3433
FT                 /product="Gypsy-7_HMM-I_2p"
FT                 /translation="MECVLSGMQGVLCMLDDVLVTGADRNEHLDRLNAVLQ
FT                 RLQDAGLTLQKSKCRFFEDQVEYLGYIVDKNGLKKSPQKINAIKNVPMPSN
FT                 VKQLQSFLGLVNYYRNFVPNASSMLAPLYQLLHKNTKWQWTPQHDMSFDSI
FT                 KRALCSDQVLAHFNSNFKIILTVDASPSGLGAILSQVDEHKIERPVSFASR
FT                 TLNSAEKTAVSGSIPIADCSRAIRKVTVYRVHIDFLGPINNQCYLVIVDAY
FT                 TKWPEVYRTVKTTSDVVIDKLYDFMSRFGLIHTIVSDNATCFLSVEFSNFC
FT                 KSNGISHVTSPAYHPASNGQAESYVKIVKKGIKSSLLTSNYNKRNNKDLLK
FT                 YLFEYRNSIHVTTGVSPAQLVYGRQLRTRLDLINPSSSTFSCDTLAERVKC
FT                 KQFLQSKVFKGSNKQTFMPGDDVMYKKYFLNKHYTWLRGTVVKKIGKAVYL
FT                 IKDCVNSEIVKKHKNQLMLYKNADSNNIPRHVTNADFSWDMPDDPSKSPHH
FT                 PNIQNNVQNIEECGNKDMPSTEPLPPPSSLPLNSPSCVIEGDASADEGRNM
FT                 EEEGLSERGQRSRSGRSKMLLRPISRVNYKNKK"
XX
SQ   Sequence 3446 BP; 1084 A; 625 C; 792 G; 945 T; 0 other;
     gtggcgacga tctacccacg cgtaaaaaaa aaaaaattta aattccaaat gtcgcatttt        60
     ggcgtattgt cgcaatttga ccacaatttg caaacttggc aaatatacaa gggtcatcta       120
     actcagtggt ttattgcgaa cgatgtaacc gaagctacag attcgtcggg ggtcaaacga       180
     agggcgatac tactgagcgc actcagcgag gctacgtatc aactcgcaat aaatttggct       240
     ttacccaaag aaatccaggc ggtgcctttt gaaggtatac ttcaactgct ggacgatcac       300
     tttacgccca aaagatgtgg atttggtgaa agattcaaat tttataacgc agcacagcac       360
     gaaggagaga attattctca atgggcagcg aggttacgcg ggataacagc tcattgcggg       420
     tttttaaacg ttgaggaagc attaagagat cgtttcataa tgggaatgct tccgggagcg       480
     gaacgggaga agtgtttcgc tcaagaccat caggaattaa ccctggcaaa ggctgtggag       540
     ctggcagaca gtgtgcgtag cgcgcgcgct gcatcttcgt cgggtacaac ggaggggccc       600
     catatggccc gggtcgaaac gctgttcaaa ataagtgata gtgaaaaagt gtcgtgcacc       660
     gtatgtggtt ttaaaaatca tacgtcgaaa caatgtcgtt ttgcaaatta tagatgtaaa       720
     aagtgcaatg taaaaggcca tttgcgtcga atgtgtaaga aaattaattt tgtcaccaac       780
     gagactgtgc atgagaacgg cgatgatggt gagttgtata atattcgcac ggctaatgga       840
     gagcctatgg tagaaactgt tcgtgttcag gggctgccga tgaaatttca aatagatagc       900
     gggtcggccg tcacagcaat atccgagact acatatttaa aatattttca tatcgttaaa       960
     ttattcaaaa gttgcaagcg cttattaacg tacaacggga ataatattaa gtatattggt      1020
     atcgctaagt tatgttttac atatatgaat aaaacgcaca cattaaacgt ttatataata      1080
     cgtaacggcg ggccgccgat tttgggcagg gattttattt ctacatttaa attagtaatg      1140
     ttgcccctta actactgcag caaggcaacg aatatcagtg agctattgca attacaatat      1200
     ccgtctgttt tttcagacga cctaggcact tccaagaaat ataagataaa tctaaaggta      1260
     aaaaaaagat gctaaagcaa gtttttttaa gcctcgcccc gttgcatttg cgcttcgaga      1320
     aaaaatagat aaggagttag ataggttagt acgcgacggc atactaaaac cggttgagta      1380
     ctcggcgtac gcgtcgcccg ttgtgcctgt gttgaagcgc gacgggacga ttcgattatg      1440
     tgcggactac tcggtgacta ttaacaaaca gctgttagtg gatcaatacc cattgccgac      1500
     tgctcacgag ctattcgcaa agttacacgg cggacagcaa tttagtaaat tagatctttc      1560
     acaagcttat gcacagtgtg ttttggatga agaatcgcaa aactacacct gcattaacac      1620
     tcacaagggg ttatttaagt atacgcggct gagtttcggg ttagctagtg caccggccat      1680
     atttcagcgc gtaatggaat gcgtattgtc cgggatgcag ggagtgttgt gtatgttaga      1740
     tgacgtttta gttacgggcg ctgataggaa tgaacatctt gataggttga atgcagtatt      1800
     gcagcgcttg caggatgcag ggctaacgct tcaaaagagt aagtgtaggt tttttgaaga      1860
     tcaagtcgaa tatttagggt acatagttga caaaaatggt ttaaaaaaat caccacaaaa      1920
     aattaatgct ataaaaaatg tgccaatgcc gagcaatgta aagcaattac aatccttttt      1980
     aggccttgtc aactactaca ggaattttgt gcctaacgct tcttcaatgt tggcgccgtt      2040
     atatcagctg ttacacaaga acactaaatg gcaatggacg ccccaacacg atatgtcatt      2100
     tgatagtata aagcgtgcac tttgttcgga tcaggtgtta gctcatttta attcaaattt      2160
     taaaattatt ttaactgtcg acgcttcgcc tagcgggttg ggtgcgatac tgtctcaagt      2220
     agatgagcat aaaatagaac gacctgtgtc ttttgcctca cgcacgttga attcggcgga      2280
     gaaaacagct gttagtggat caatacccat tgccgactgc tcacgagcta ttcgcaaagt      2340
     taccgtttat agagtgcata tagatttttt agggcctatc aataaccaat gttatttagt      2400
     aattgtcgat gcatatacta aatggccaga agtgtatagg acggttaaaa ctacgtcaga      2460
     tgtcgttata gacaagttgt atgattttat gtcaagattc ggtcttattc acactatagt      2520
     aagcgacaac gctacttgtt ttttgtcagt agaattttcg aatttttgta agtcaaatgg      2580
     aatatctcac gtaacatctc ccgcttatca tccggcaagc aatggtcagg ctgaaagcta      2640
     tgttaaaatt gtaaagaagg ggattaaatc aagtttgttg acgagtaact acaataaacg      2700
     aaataataaa gatttattaa aatatctttt cgagtacagg aactcaattc atgtaacgac      2760
     gggggtttca cctgcgcagt tagtctacgg tcggcagctt cggacacgtt tagatttaat      2820
     taatccttca tcatccacgt tttcatgtga cacgctcgca gagagagtga aatgtaaaca      2880
     gtttttgcag agtaaagtgt ttaaagggag caataagcaa accttcatgc caggggatga      2940
     tgttatgtat aaaaaatatt ttctaaataa acattacact tggttgagag ggactgtagt      3000
     taaaaaaata ggaaaagctg tatatttaat aaaagattgt gtaaattcag aaattgtaaa      3060
     aaagcataaa aatcaattaa tgttatataa aaatgcggat agcaacaaca ttccacgaca      3120
     tgttacaaat gcagattttt catgggacat gcctgatgat ccctcaaagt cgccgcacca      3180
     tcctaatata caaaataatg tacagaacat agaggagtgc ggaaacaagg atatgccgtc      3240
     taccgagcca ttgccaccac cgtcgtcgct gccgttgaac tcaccgtctt gcgtcataga      3300
     aggtgacgct tctgcggacg aggggaggaa catggaagag gaaggcttat cggagagggg      3360
     tcaacgatca cggtcagggc ggtcgaaaat gttgttgcgt cccatttcgc gggtgaatta      3420
     taaaaataaa aaataaaagg gaggaa                                           3446
//
ID   Gypsy-7_HMM-LTR repbase;    DNA;    INV; 113 BP.
XX
AC   CAEZ01009750;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_HMM_;
KW   Gypsy-7_HMM-I; Gypsy-7_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-113
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01009750; Positions   12697   12585.
XX
SQ   Sequence 113 BP; 28 A; 26 C; 25 G; 34 T; 0 other;
     tgttatatat gtatagtggc tgcgtccact ccggtttgtg ccgatcggct tgaataaagg        60
     cagtgcgtat aaaactacca agcgtatcac ttgtcccgtt tgcatatcca aca              113
//
ID   Gypsy-7_LH-I repbase;    DNA;    INV; 4707 BP.
XX
AC   ADOQ01008340;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_LH_;
KW   Gypsy-7_LH-LTR; Gypsy-7_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4707
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008340; Positions    5115     409.
XX
CC   Positions [3699-4172] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           479..2671
FT                 /product="Gypsy-7_LH-I_1p"
FT                 /translation="MDESADSEGDATVQERRPETGPLRSEESDDHVSRELA
FT                 LVQRERELIERERQLLQREREMARSVSASSNAASASGGVRNLKDLLPEFDA
FT                 TENTFWRWKHQLELLRNSYQLDDNSARILISSRLRGRALTWFYSKAEHLML
FT                 SIEDLLGEMTRMFDLRPGKLSLRKEFEARAWKTAEPFCDYYHDKIILANRV
FT                 PIDEDELLDYLIEGITDIRLQNQARIMNFKSKTMLLEAFENVSLENKRYSD
FT                 PKLKKTGPQSSAKTESAKAKPTRCYKCRETGHIATHCKNPLSAEKRTCFVC
FT                 GSTEHLARSCPERKQATVSEVKEKSAQSTSTNIIEMEQNSELPRPYLINVK
FT                 ISSSNKNDSVDTFTIDAIIDSGSPISLVRDSVVSAASCNPVNEDTSRFCGI
FT                 NGSRLKILRIFYGNVEVQSVCTKIKFYTVPDDTIAFRMLLGRDFLACPSLR
FT                 ITLGDTVEIESVCESNSEQVLNIAVSEHVDNVCDELRINPAVDRDVCNRVC
FT                 DIYESCYLRNFQLKKHEPDFEMNIVLKHDQPITSRPRRLSFADKEVLQKIL
FT                 DRLIKENIIRPSNSAYASPIVLVRKKTGEPRLCVDFREINKITVRDNFPTE
FT                 LIDDNIDRLKDKRYFSVLDLRDGFHHVKMSATSIKFTSFVTPLGQYEYLRM
FT                 PFGLTNAPRIFQRFIHNIFDKLIREHKILLYLDDILIATSSIDEHLAILSE
FT                 LFELAGKSQLQFRVDKCYFTANRNKIILDIV"
FT   CDS           3501..4541
FT                 /product="Gypsy-7_LH-I_2p"
FT                 /translation="METNVIRTCHDDIGHVGVDKTVNNILKVYWFPRLREK
FT                 VKEHIANCLRCIEFSPISGKAEGFLHNVPKEKLPFMTIHIDHLGPLEKTAK
FT                 NYRHILIIIDAFTKFTRTYPCKSTTTDESIKCLRDYFRAYSKPKRLISDRG
FT                 TCFTSDAFKEFLRSEDIQHVLIAVSTPRANGQVERFNRTIAPMLAKLSETP
FT                 SKWDRVLNDVEYSLNNTVCRATGKTPSQLLFGVDQKGKANDSLREILNPDV
FT                 NRDLEEIRNHASANIEALQLQNEKRYNLRRKAAREYKVGDYIEIRNIETTP
FT                 GINKKLLPKFKGPYIVKAVLDHDRYVVSDIDGFHLTQRPYTSIVAPDQMRP
FT                 YIHS"
XX
SQ   Sequence 4707 BP; 1444 A; 884 C; 1111 G; 1268 T; 0 other;
     gtattatttt cagaagtggg attcgaatac ggattcggtg cgactgagtc tgatacgata        60
     agtattgtga ttaacctcgc gcgagtgtta atacgagacg atatagacgc gacacgtgat       120
     aaaggacgac gggtacaaaa acactctatg tgagtcgtgt acgggttatt ttctgtgtgt       180
     aagatacccg agtgccggcg gatcgtttta gttctgtgtg aacggtatcg ttgtcgttgc       240
     gctgtatcga gactgtacat cggatcgtta gtatggcgtt attggaagga aaagacttta       300
     cggtagccga gctaaaagat gctcttcgcg agagaaaatt agcttctagt ggttcgaagg       360
     cagagctaat tgtccggttg agtatcgcgg atccgaatat tgggcaattc taagtgaaaa       420
     acggaatcag gcgtcgcgag tgaaagacgc gtcgacttcc gatagtgtgc gagaggacat       480
     ggacgaatcg gcagattcag aaggcgatgc aacggttcag gaaagaagac cggaaacggg       540
     gccgctgcga tcggaagaat ctgacgatca cgtgtcacgt gaattagcat tggttcaaag       600
     agagagagag ttgatcgaga gggagcgaca actgctacaa cgggaacgcg agatggcgcg       660
     tagcgtttcc gcatcgagta acgctgcctc ggcgagcggt ggtgttcgta acctcaaaga       720
     tctcttaccc gaatttgatg ctaccgagaa tacattctgg agatggaaac atcagctaga       780
     gttgttgaga aactcttatc aactagatga taattctgca agaattttaa taagctcaag       840
     attgagagga cgagctctca cctggtttta ttccaaagcg gaacacctga tgctgagtat       900
     cgaagatttg ttgggagaaa tgacgcgcat gtttgacctg cgccctggca aattatctct       960
     ccgcaaggaa tttgaagccc gtgcatggaa aacggccgaa ccattttgtg attattatca      1020
     cgacaaaata attcttgcta atcgagtgcc aatagacgaa gacgaacttc tcgattacct      1080
     cattgagggt attactgata tacgcttaca aaaccaggcg cgtataatga attttaagtc      1140
     aaaaacgatg ttattagagg ccttcgagaa cgtcagctta gagaacaaac ggtatagcga      1200
     cccgaagttg aagaagaccg gcccacaatc gtctgcaaaa acggagtccg cgaaagcgaa      1260
     gccgacgagg tgctacaagt gccgcgagac tggacacatc gctacacact gcaagaatcc      1320
     gttgtcagcg gagaagagaa catgtttcgt gtgcggttca acggaacacc tggcgagaag      1380
     ttgccctgag cgcaagcaag ccactgtgtc tgaagtaaaa gaaaaatctg cacaatcaac      1440
     atcaacaaac attatagaga tggaacaaaa tagtgaactc ccgagacctt acttgatcaa      1500
     tgtaaaaatt agttctagta ataagaacga cagcgtagat acctttacga tagatgcgat      1560
     aatcgattct ggctcgccta ttagtctagt tcgcgatagt gttgttagtg ccgcgagttg      1620
     taatccggtg aatgaagaca ctagtcgatt ttgtggaatc aacggttcac gtcttaagat      1680
     tttacgtata ttttatggca acgtcgaggt acagagcgtg tgcacaaaaa taaaatttta      1740
     tacggtaccc gatgatacga ttgcatttag gatgctgcta ggcagagact ttttagcttg      1800
     cccctctttg cgtattactc ttggggatac ggtcgaaatc gagagcgtgt gcgaatcaaa      1860
     tagcgaacaa gtattgaaca ttgctgtgag tgaacatgta gataatgtat gtgacgagtt      1920
     acggattaat cccgctgtag atcgagacgt ctgtaatcga gtatgcgaca tctacgagtc      1980
     ttgttatctt cgaaattttc agttaaagaa acatgagcct gacttcgaga tgaatatcgt      2040
     tttaaaacac gatcagccga taacttcgcg tccgcgtaga ctctcttttg ctgataaaga      2100
     agtgttacaa aaaatcctag acaggctaat aaaagaaaat attattcgcc cgagtaattc      2160
     ggcatacgcg agtccaatcg tgttggtaag aaagaagacg ggtgaacccc gactttgtgt      2220
     tgattttcgt gaaataaaca aaataacagt acgcgataat tttccaaccg agctcataga      2280
     tgataacatt gatcgtttga aagataaaag atacttttcc gtgttagact tacgagacgg      2340
     attccatcac gtcaagatga gtgcaacatc gataaaattc acgtcgttcg taactccgct      2400
     aggacaatat gagtacttac gaatgccctt tggattaaca aatgcgccgc gtatatttca      2460
     aagatttata cataatatat ttgataagtt aatcagagag cataaaatat tattgtatct      2520
     tgacgatatt ttgatcgcta cgagtagtat agatgaacac ttagcaattt tgtcagaatt      2580
     atttgagtta gctggtaaga gtcaattaca atttcgcgta gacaaatgct attttactgc      2640
     aaacagaaat aaaataatct tggatattgt gtgaatcagc atggaataag accgagcgac      2700
     gaaaacatcg agtcagtatt aaactaccca gtaccgagaa atgccggaga ggtccgtcgg      2760
     tttgtcggtc ttgcgagcta ttttcgtaga ttcgtcccta atttttctct actggcaaaa      2820
     ccattgtacg acttgaacaa aaaggatgct tcatttgctt ttggtgtcgc ggagcatgag      2880
     gcgtttgaga cattgaaacg tcatttagct agtagaccgg tattagcgat ttattcgccc      2940
     cacgcagata ccgagttaca ctgtgatgcg agcgcgagcg gttacggtgg tattctactc      3000
     caaaaacaga gcgagggcgc gtggaagcct atttctttct ggagccagcg aactacaccc      3060
     accgaggcaa aatatcacag ttatgagctt gagtgcctcg cggtggtata tgcgttgaag      3120
     cgatttcata tttatctagc tggacagaaa tttaaaattg ttacggattg cgacagtttt      3180
     cgcctcacgc taaacaaaaa agatattaat ccgcgaatat ctcgttgggc cttgttccta      3240
     caaaactata attatgagat agagcatcga cctgggaaac gaatggctca tgtcgacgcg      3300
     ctgagccgat gccacagtgt attagtactc gagggtagca cgtttgaacg aacgctgtct      3360
     atttgccaag acagagatgc cgagattcta aaaattcgag aaagacttga agagggtgaa      3420
     gtgaaacatt acgaattgcg tgacggttta gtgtatagga aagataatga taagaaatta      3480
     ttattctttg tacctgttta atggaaacta atgtaattag aacatgtcat gacgatattg      3540
     gacatgtagg cgttgacaaa actgttaata atatcttaaa ggtttattgg ttcccgagat      3600
     tgcgagagaa agtaaaagag cacatcgcta attgtcttcg atgtatcgag ttttcgccga      3660
     taagcggtaa agcagaagga tttttacata acgtaccgaa agagaaatta ccatttatga      3720
     cgattcatat agatcacctt ggtccgttag agaaaactgc taaaaactac aggcatatac      3780
     tcattattat cgatgcattt actaagttca ctcggacgta tccctgtaag tctactacga      3840
     cggatgaatc aataaaatgt ttgcgtgact acttccgtgc gtatagcaag ccaaagcgtc      3900
     taatctcaga cagaggtacg tgtttcacat ctgacgcatt taaggagttt ttgagaagtg      3960
     aagatattca acatgtcctt attgcagtga gtacacccag agctaatggt caagtggagc      4020
     gttttaatag gaccattgct ccaatgttgg caaagctaag cgaaactccc tccaaatggg      4080
     atcgggtctt aaatgatgtc gagtattctt taaataatac cgtgtgtcga gccactggta      4140
     aaaccccttc gcaattgttg ttcggagttg atcaaaaggg aaaagctaat gactctttgc      4200
     gtgaaatact taacccagat gtgaatcgcg accttgaaga gattcgaaat catgcgtctg      4260
     cgaatatcga agcgctacaa ctccagaacg agaagcgata caatttgcga agaaaagctg      4320
     cgcgtgaata taaagtgggc gattatatcg agataagaaa tatcgaaact acacccggca      4380
     taaacaaaaa gctgctgcct aaattcaaag ggccctatat tgtaaaagca gttctcgatc      4440
     acgatcgtta tgttgtttct gacatcgatg ggtttcatct aacccagaga ccgtatacaa      4500
     gtatagtcgc gcccgaccaa atgaggcctt atattcactc atgattaatc gcatatgttt      4560
     taggtgtaag ttttgtattc tgtatgttat agtagaagtt ccgatttacg tgtgttgtag      4620
     caatagtttt agttattaag tgcacaaggg taatgttctt tttttatttt gtttgaccga      4680
     gacggtcaaa agtcagaatg gccgaac                                          4707
//
ID   Gypsy-7_LH-LTR repbase;    DNA;    INV; 218 BP.
XX
AC   ADOQ01008340;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_LH_;
KW   Gypsy-7_LH-I; Gypsy-7_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-218
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008340; Positions     408     191.
XX
SQ   Sequence 218 BP; 54 A; 45 C; 53 G; 66 T; 0 other;
     tgtaggcatt ttctttgtat tagttatttt atctttcgtt accgggtctg tgcccgcctt        60
     tttcttccgc gtgagtattg ttatgatcac gtgagatggg gccgcgagtc agtcgtgcga       120
     caaacaagga acagtcgagt cgctcacgga tcctagaaaa aaagcatcaa gaacgccctg       180
     aatattgtag tgtacgaatt gtaaactgag tgcctaca                               218
//
ID   Gypsy-7_LMi-I repbase;    DNA;    INV; 4444 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_LMi-I;
KW   Gypsy-7_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4444
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3371-3371 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3354-3839] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           127..1305
FT                 /product="Gypsy-7_LMi-I_1p"
FT                 /translation="MTTPDPVLLQVLQQQQQLLQQQHEQHKQQIDLLTKLF
FT                 TSSRDVAVPSGPPPFLSYDEATEEWDKYEHRLRQHFQAFGVTDPTLCRALF
FT                 LSWCSPQVYRVLCKLTPLHDPSTLSFDEMCSLLSGYYCQRTNTVISSMEFY
FT                 QCHKQPNQTYRAWAAELQGLSHRNFISDIHKESYADRMVRDVILRLAPDRE
FT                 IRDRALQQDDPTLADVLKIAQAFEVTRAAARTIDTWGDVSAVQPPDSTRPP
FT                 SADATGEVAAVTSNRPLQSQARRQNSSAQQYSRRPSRSGKWAAPFPSCPEC
FT                 FSSHERNDCPRRWATCRHCRKKGHISSVCRSAPAPPARDMAMEINNVAALT
FT                 HTPAKLFIEVSVLNRAVQMQVDTGAAATLLNSQTYVYLGSPPCNRHRGSF"
FT   CDS           1431..4445
FT                 /product="Gypsy-7_LMi-I_2p"
FT                 /translation="MDAFRAFGFSISDEVHLVSDQVPYPSLESLCSEYAPL
FT                 FSPGLGCVSSFQAHITMKPTARPRFFRAREIPIALKAEVKKELDRLTDAGV
FT                 IRPVASSEWATPLVVIVKPSGKLRICGDFKATINAQSIIDTYPLPRQDELL
FT                 SKLSGGQYFSKIDLAEAYLQLPLDEESQSKLVVNTPFGLYQYLRLPFGVAS
FT                 APAIFQHFLEELTHPIPGCINYLDDIVVTGRTNEEHVNNLRTLFSVLQDKG
FT                 LKCNLQKCQFFQPTIEYLGLELSGRGVSPITDHVRAVTALPRPTSVKELQA
FT                 FLGKIAYYHKFIPGASTLSRPLYDLLRKGAKFEWSPACEAAFLSLKNKLLS
FT                 APCLMTFHPGQHLVLATDASQYGVGAVLSHRFPDGSERPIAFTSKTLTPAQ
FT                 SKYSQIEKEALAIVYALKKFYVFLYGTKFHLVTDHKPLVSLFNPSAPLPDK
FT                 AAHRLQHWALFLSRFHYEIHFRPTAKHANADALSRLPIGPDAAFDHDELLC
FT                 FHIDDEAQQTVEGFPLTSDRLAAAVASDPVLRQVVRYVQYGWPESPPRRAS
FT                 DPLRNYYSFQYQLAVRDGVLLLQPANSPPRVVIPSALRREVLRLLHADHWG
FT                 IVRTKALARRHVFWPGMDTDIVRLVNACETCATQQAAPRASLTPWPQPASA
FT                 WERVHVDYAGPFLNSYWLLVVDAYSKFPFVARCTHLSSSVTIAALSKIFAM
FT                 EGLPVTLVTDNGPQFTSHEFKEFCAQRGIRHVLAPPFHPQSNGEVERMVRT
FT                 FKNQMRKYIQSSSPDVALDRFLASYRFTPLGDKSPAELLHGRQPRTTLHLL
FT                 VPPPQVQREHPRHRFRPGVTVWARMYGRRPKWTPATVTRCEGRRLCVLRTP
FT                 DGEITRHLGQLRPRVPAWSPNSGQQRDAPTSPADFNSTPVVEQPDPSDVSA
FT                 NPERGARGESMPPSSESLSSTWLLPSTQPPSAPASQPQQSITSSPIISSWK
FT                 PSRRATRRNHLPQPYTVVQPRRLCNSGSDSGCEQMDIQCCEPRLLEGERX"
XX
SQ   Sequence 4444 BP; 944 A; 1277 C; 1084 G; 1139 T; 0 other;
     cttggcgacg agtcggtcgt attgcacgcg tgttccgcgg cctccgtacc gaccctgttc        60
     tatgggcgcg gtgtctgatc tcttcttgtt tctctgggga tcgtatgtgt gtttccttca       120
     tcctctatga ctactccgga ccccgtgtta cttcaggtgc tgcaacagca acagcaactg       180
     ctgcagcagc agcatgagca gcataaacag cagattgacc tcttaactaa attgtttact       240
     tcgtcgcgcg acgttgcggt gccgtcgggt cctcctcctt ttctttccta tgatgaggcc       300
     acggaagaat gggacaagta cgagcatcgt ttacgtcaac actttcaggc ttttggtgtt       360
     acggacccta cgttgtgtcg cgccttgttt ctttcatggt gttctcctca ggtgtatcgg       420
     gttttgtgta aactgacgcc gttgcacgat ccatctaccc tttcttttga cgagatgtgt       480
     tctttgcttt ctgggtatta ctgccagcgg acgaatacag tgatctctag tatggaattc       540
     taccaatgtc ataaacaacc caatcagacg taccgggcct gggcggccga actgcagggg       600
     cttagccatc gtaattttat ttcggacatt cacaaggaat cctatgcaga tcgcatggtt       660
     cgggacgtta tcctacgctt ggctcctgac agggaaatcc gcgaccgtgc cctccagcag       720
     gatgacccca ccttggccga tgttttgaaa atcgctcagg ctttcgaggt tacgcgggcg       780
     gcggcccgca ctatcgacac atggggcgac gtttccgccg ttcaaccgcc cgattctact       840
     cggccccctt ccgctgatgc gacgggggag gtggcggcgg ttacctcaaa ccgtccactc       900
     cagtcacagg cccgacgaca gaacagctca gctcaacagt acagtcgacg gccttctcgc       960
     tccggtaaat gggcggcgcc gttcccatct tgtcccgaat gtttttctag ccatgaacgt      1020
     aatgattgcc cgcgtcgttg ggccacatgt cggcactgta ggaaaaaggg gcacatttct      1080
     tcagtatgcc gctcggcacc ggcgccaccc gcacgtgata tggctatgga aattaataac      1140
     gttgcggcac tcacacacac tcctgccaag cttttcattg aagtatctgt tctgaaccgc      1200
     gcggtgcaga tgcaggtaga cacgggggcg gcagccacat tactgaactc tcagacatac      1260
     gtatatcttg gatcaccccc ctgcaaccgg catcgcggaa gcttttgagt tacaaccaac      1320
     aatctattcc tgtgttaggt caattcacgg ccccagcgac ctatcgctcg gtggtccgta      1380
     caatcacgtt tttagtagtg gatcaagcct cgacagccaa cctgtttggt atggatgctt      1440
     ttcgagcctt cgggttctct atatccgatg aagttcattt agtatcggac caagtgccgt      1500
     atccgtcttt agagtctctt tgttctgaat atgctcctct tttctcgcca ggactgggtt      1560
     gtgtttcctc cttccaagct cacattacca tgaaaccaac agcccgtcct cgtttcttcc      1620
     gggcacgtga gatacccatt gcccttaaag cagaggtaaa aaaggaattg gaccgcctta      1680
     cagatgccgg cgttattcgc ccggttgcgt ctagtgaatg ggccacacca ttggtagtca      1740
     ttgtcaaacc ctctggcaaa ctccgcattt gcggcgactt taaggccaca attaatgctc      1800
     aatccatcat agacacatac cccctgcctc gacaggatga attgctctcg aaattgtctg      1860
     gtggacaata tttctcgaaa atagacctgg cggaagcata cttacaactg ccgttagacg      1920
     aggagtcgca aagcaaactg gtagtcaaca ccccgtttgg actctatcaa tacttacgtc      1980
     ttccctttgg ggttgcaagc gcaccagcta ttttccaaca ctttttagag gaacttacac      2040
     acccaattcc gggatgtatc aactatttgg atgacattgt ggtcactggg cgcactaatg      2100
     aggaacatgt gaacaatttg cgaaccttat tctctgtgtt acaagacaag ggactcaaat      2160
     gcaatctcca aaagtgccaa ttttttcagc caactattga gtatctcgga ttggagttat      2220
     cgggacgagg tgtttccccc attacggacc acgtgcgtgc cgtgacagcg ttgccgcgcc      2280
     ctacgtctgt taaggaattg caggccttct tgggaaaaat tgcatattat cacaaattta      2340
     ttccgggggc ctccactctt tcgcgtcctc tctatgattt gttacggaaa ggtgccaaat      2400
     tcgagtggtc ccccgcgtgc gaggctgcct ttttgtcact taagaacaaa ttactttctg      2460
     ccccatgttt aatgacgttc caccctggtc agcacttggt tttggcgacg gacgcgtctc      2520
     agtacggggt gggtgctgtt ctttcgcacc gattccctga tggctccgag cgtcccatcg      2580
     cattcacctc caaaacgctt acaccggccc agtcaaagta ctctcaaata gaaaaagaag      2640
     ctctggcaat tgtgtatgct cttaagaaat tctatgtctt cctgtacggt acgaaatttc      2700
     atctagtgac agatcacaag cctttggtgt ccctcttcaa cccctcggcc ccactaccgg      2760
     acaaagctgc acacaggctt cagcattggg cgttgtttct ttctcgtttt cactatgaga      2820
     tccatttccg ccctacagcg aagcatgcaa acgctgacgc attgtcccgt ctgccgattg      2880
     gaccggatgc tgcttttgat cacgatgaac ttctgtgctt ccacattgat gatgaggcgc      2940
     agcagacggt cgagggattc cccctcactt ccgaccgcct tgctgcagca gtggcgtcag      3000
     atccggtgtt gcgtcaagta gtgcgttatg ttcaatatgg gtggccggag tctcctcctc      3060
     gacgggcttc ggaccccctc cgcaactatt actccttcca atatcagctg gccgtgcgcg      3120
     acggagtgct tttgctgcag ccggcaaatt ctccgccgcg agtagtgatt cctagtgctc      3180
     tccggcgtga ggttcttcgc ctcttgcacg cggaccactg gggcatcgtc cgtactaaag      3240
     cattggcgcg gcgtcacgtt ttctggccgg gtatggacac tgacattgta cgactagtaa      3300
     atgcatgtga gacatgtgcc acacagcagg cggccccccg tgcttcgctt acaccatggc      3360
     ctcaaccggc ctcagcctgg gaacgcgtac atgtggacta cgcgggaccc tttttgaact      3420
     cgtactggct ccttgttgtg gacgcgtatt caaagtttcc ttttgttgca cgctgcacac      3480
     acctgtcttc ctctgtgaca attgcagcac tctcgaagat cttcgccatg gaagggcttc      3540
     ctgttaccct ggttacagac aacggaccac aatttacttc tcatgaattc aaagagtttt      3600
     gtgcccaacg gggtatccgc catgtcctgg ccccaccttt ccacccacag tctaatgggg      3660
     aggttgagag aatggtgcgg acttttaaaa atcagatgcg caaatatatc cagtcttcct      3720
     cacccgatgt tgcattagac aggttcttgg cttcatatcg cttcacccca ctaggcgata      3780
     agagcccagc ggaattgcta cacggtcggc aaccccgcac cacgcttcac ttgctagttc      3840
     ctccaccaca ggtgcagcga gagcaccccc gtcataggtt ccgtccgggg gttacggttt      3900
     gggccagaat gtatggtagg cgccccaaat ggacaccagc aactgtcact cgctgcgaag      3960
     gccgccgtct ctgcgtcctt cgtacgccgg atggggaaat tacccgtcat ctcgggcaac      4020
     tccgcccacg agttcctgct tggtcaccga actccgggca gcagcgtgac gcgcctacct      4080
     ctcctgcaga tttcaactcg acaccggtag ttgagcagcc cgatccgtca gatgtcagtg      4140
     caaatcctga gcgaggcgcc cgaggggagt caatgccacc ctcgtcagag agtctgtcat      4200
     ccacctggtt gctgccgtct acacagccac cttcggcccc ggcctcccag ccgcagcaat      4260
     cgatcacatc atcacctatc atctccagct ggaaaccgtc gcggcgagca acacgtcgca      4320
     accacctacc gcagccatat acagtggttc agcctcggcg tctgtgcaac agtggtagtg      4380
     atagtggctg tgagcaaatg gacattcagt gttgtgaacc ccggctcctc gaaggggaga      4440
     ggtg                                                                   4444
//
ID   Gypsy-7_LMi-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   26-FEB-2014 (Rel. 19.12, Created)
DT   26-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_LMi-I;
KW   Gypsy-7_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-195
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3372-3372 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 195 BP; 43 A; 53 C; 57 G; 42 T; 0 other;
     tgatatgtcc gcgcgccgtg taattaaaaa cggcgccgac actagtgcta caggccgccg        60
     cctggtgcgc cacgggcgcc gcacaaagcg cgctctatat gagaaggtgc gcacacacgg       120
     cgcaatgctt cggcagtttg atgtgtgact tcaaccgagc gtgttatgtt ttcgtggtta       180
     gcagtcaaca tagca                                                        195
//
ID   Gypsy-7_MeUr-I repbase;    DNA;    INV; 3570 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-3570
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3042-3042 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..3569
FT                 /product="Gypsy-7_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDKYLRPERFDADPSSSTDNAISWIHWKKTFESFLAA
FT                 VQTDKKACSKVTKYQLLVNHLSPNIFCYIRDVENYDXAIQKLDTLFVKPGN
FT                 EVYSRYKLTRRQQNPGETIDKYVQELKLLAKDCVFKAVSAEQNESEYVRDV
FT                 FVAGFSSATIRQRLLENTSLSLDDAQRQARALEMAQINNELYQKPSASVFV
FT                 NTTATPRQGSVDRECYFCGSKRHPRRTCPAYNATCLTCGKRGHFAKVCKSR
FT                 PQQQNAFAVYNNENSEIIPNIPNTSLTCVVAASSDLSKATISIMINKSITA
FT                 RALIDTGSSASFINSRLVVDYKLNKTTCIQNVTMAATHMISTVDGLCMLNI
FT                 ELQGQSIDAEFLVMRGLCSDVIIGHDILKKHNSLEMYFGGPRAPLKLCSLA
FT                 CANIDPVSLFPNLLPDCKPIAIKSRRYSSDDTAFISAEVKKLLEDKIIEPS
FT                 LSPWRAQVLVVSNENHKKRMCIDYSLTINKFTQLDAYPLPSIEDVVAKVAK
FT                 FRVFSKIDLRSAYHQIPILECERPYTAFEADGNLYQFRTIPFGVTNGVAAF
FT                 QRAINTILAKEKTKGIYTYLDDITVCGKDQEDHNEQLKHFLDVATRYNLTL
FT                 NLDKSEFSKEQINILGYNIHNGIIKPDPDRLRPLLELSVPENTASLKRVLG
FT                 LFAHYSKWVPNFSNKIHSLVAHETFPMTLEATKAFEAIKKEIADSTLHAIE
FT                 DNVPFTVETDASDHSIAGTLTQEGRPIAFFSRMLSSCERNYPAIEKEATAI
FT                 VESIRKWRQFLCGRAFRLITDQKSVAYMFDQTHSSKIKNDKIQRWRLELAN
FT                 FKFDIIYRPGKENQAADALSRANQIASTTTKNDLRALHENLCHPGVTRMMH
FT                 WIRTKNLPFSIEEVKETTSSCQVCAELKPRFYKYNGTLIKATSPFERLSID
FT                 FKGPLPTDGSKNRYMLTIIDEYSRFPFAYPCSDLTSDTVKEKLTDLFSMFG
FT                 MPTYIHSDRGATFLSEDLKQFLHRKSIATSYTTPYNPRGNGQTERYNGIIW
FT                 KTIELALKSQNLPTTKWEHVLTGALHVIRSLLCTATNCTPHERMFYHPRRS
FT                 ASGQSLPTWLNSPGRVLLKNHRRSSKYDPIVEEVELLEANPQHSRVRFDDG
FT                 REAVVANRQLAPGGKRLPELDDEDKEVWEEAQEQPSMNENQTEPTTENLEL
FT                 RRSTRQCHPPAHLDDYICNMTPGR"
XX
SQ   Sequence 3570 BP; 1178 A; 782 C; 707 G; 900 T; 3 other;
     atttatttak caaaaataaa atggacaaat acttacgtcc tgagcgattc gacgcagacc        60
     catcatcaag taccgacaat gcaatttctt ggatacactg gaagaaaaca tttgaaagct       120
     tcctcgcggc ggtgcagaca gacaaaaaag cttgtagcaa agttacgaaa taccaattat       180
     tagtaaacca cttatctccg aatatttttt gctacatacg tgacgtggaa aactacgatn       240
     atgctattca gaaactagac acactctttg tcaagccggg aaatgaagtt tattcacgat       300
     acaaactcac aagaagacaa cagaatccag gtgagactat agacaagtac gtacaagagc       360
     tgaaattatt agcgaaagac tgcgttttca aagccgtttc tgctgaacaa aatgagagcg       420
     aatatgtgag agacgtgttt gtagctggct tttcatcagc taccatccgt cagagacttt       480
     tagaaaacac gtcgttaagc ttagatgatg cacaaaggca agctcgtgca ctcgaaatgg       540
     cgcagattaa caacgaactc tatcaaaaac cttcagctag cgtatttgta aacaccactg       600
     ccacacccag acaaggttca gtggacaggg agtgctactt ctgtggntcc aagagacatc       660
     cgcgacgtac atgtccggct tacaatgcaa cttgcctaac atgtggcaaa aggggccact       720
     ttgcgaaagt gtgtaagagt agacctcagc aacagaacgc ttttgcagtc tataataatg       780
     aaaactcaga aattatccca aatattccaa acacttcttt aacatgtgtc gtagcagcta       840
     gcagtgacct cagtaaagca accatctcta tcatgatcaa taaatctata actgctagag       900
     cgttaattga caccggaagc tctgctagct ttattaacag tcgacttgtt gtagattaca       960
     aattaaacaa aaccacatgt atacaaaacg ttactatggc tgcaacacac atgatatcca      1020
     ctgttgacgg tctgtgtatg ttgaatatcg aactgcaagg acaaagtatt gatgctgaat      1080
     ttctagtaat gcgagggctt tgctctgacg ttataatcgg acacgacatt cttaagaaac      1140
     acaatagtct cgaaatgtac tttggtgggc ctcgtgctcc gctaaaacta tgttccttgg      1200
     catgcgctaa tattgaccca gtgagtttgt ttccgaacct tctaccggat tgcaaaccta      1260
     tcgctattaa atcaaggaga tattcgtcag atgataccgc attcatcagt gcggaagtca      1320
     agaaactctt ggaagacaag attattgagc ccagcctatc accttggcga gctcaggtac      1380
     tggtcgtatc gaacgaaaat cataagaaga ggatgtgtat cgattattca ttaactatta      1440
     ataaattcac acaattagac gcgtatccct taccgagcat cgaagacgtg gtggcaaagg      1500
     tagcaaaatt tcgcgtattc agcaaaattg acttacggag tgcttaccat caaataccga      1560
     ttttagaatg cgaaagacct tacactgcct tcgaagctga cggaaattta tatcaatttc      1620
     gtactattcc gtttggagta acgaacggag tcgcagcttt tcagcgtgcc ataaacacaa      1680
     tactagctaa agagaaaaca aaaggtatat atacgtatct cgacgatatc actgtatgtg      1740
     gaaaagacca agaagaccat aacgaacaat taaagcattt tcttgatgtc gctacacgct      1800
     ataacttgac gctgaatcta gataaaagtg aattctctaa agagcaaatc aacatacttg      1860
     gctacaacat tcacaatggc attataaagc ctgaccctga ccggttacgc cctcttttag      1920
     agctttccgt tccggaaaac actgcttccc ttaaacgtgt tctaggactt tttgcacatt      1980
     actcgaaatg ggttccgaat ttttcaaaca aaattcattc acttgttgca catgaaacat      2040
     ttcccatgac gctagaagct acaaaagcct tcgaagcaat aaaaaaagaa atagccgatt      2100
     cgactctgca cgccattgaa gataatgttc cttttactgt agaaactgac gcttcagacc      2160
     attcaatagc tggaaccctt acgcaagaag gtagaccaat tgcttttttt tctcggatgc      2220
     tttcgagctg cgaacggaac taccccgcca tcgaaaaaga agctacagcc atagtcgaat      2280
     cgattaggaa atggcgacaa tttctttgtg gaagggcatt ccgcctgata acagaccaaa      2340
     aatcggtagc atacatgttt gaccaaacac attcgtcaaa aataaaaaat gataaaatac      2400
     aacgttggag actagaactg gccaatttca aatttgacat tatataccgc ccaggcaaag      2460
     aaaatcaagc tgctgatgca ctatctcgag ctaaccaaat cgcttcgact acaacgaaaa      2520
     acgatctacg ggcacttcat gaaaatcttt gccatccagg ggttacgagg atgatgcact      2580
     ggatacgaac gaaaaatcta ccattttcaa tcgaagaagt taaagaaaca acatcatcat      2640
     gtcaagtttg tgccgaatta aaacctcgat tttacaaata taatggaacg ctaataaagg      2700
     ctacgtcacc ctttgaaaga ctatccattg actttaaggg gcctttacca accgatggct      2760
     ctaagaaccg ctatatgcta actataattg acgaatattc gcgattccca tttgcttacc      2820
     cctgctcaga ccttacttca gatacggtga aagagaagtt aacagatctt tttagtatgt      2880
     ttggaatgcc gacttatatt catagtgacc gtggggcaac atttttatca gaggatctta      2940
     agcaattcct gcatagaaaa tccatagcta caagttatac gacaccatac aaccctcgag      3000
     ggaacggtca aacagaaaga tataatggta ttatctggaa gaccatagaa ttggccttga      3060
     agtcacaaaa tttaccgaca accaaatggg aacatgtgtt gacaggtgcg cttcatgtta      3120
     ttcgctcctt attatgtaca gcgacgaatt gcacccccca cgaaagaatg ttctatcatc      3180
     ccaggcgctc tgctagtggc caatcattac ccacgtggct aaatagtcct ggacgagtgt      3240
     tgttgaagaa ccatcgcaga tcgagcaaat acgatcccat agtagaagag gtagagctac      3300
     ttgaagcgaa tccacagcat tcccgtgtcc gtttcgatga tggacgagaa gcagttgtcg      3360
     caaaccgcca attagcgcct ggtgggaaga gactcccaga gttagacgac gaagacaaag      3420
     aggtatggga ggaggctcag gaacaaccta gcatgaacga gaaccagact gaaccaacca      3480
     cggagaattt agagttacgt cgctctaccc gacaatgtca tcccccagct cacttagatg      3540
     attacatatg taatatgacg ccggggagaa                                       3570
//
ID   Gypsy-7_MeUr-LTR repbase;    DNA;    INV; 123 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-123
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3060-3060 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 123 BP; 38 A; 18 C; 18 G; 49 T; 0 other;
     tgtggtgaat gccatataat attattataa agtattgtgt cacatatatg tcagtcaatg        60
     tatgtcgcta cagttttgct aaataaaacc tattatttcg ggtaactctt ctcatttata       120
     tca                                                                     123
//
ID   Gypsy-7_MoPha-I repbase;    DNA;    INV; 6537 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-6537
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1159-1159 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           900..2204
FT                 /product="Gypsy-7_MoPha-I_1p"
FT                 /note="gag."
FT                 /translation="MANKDPHHWIQKLTEEQARQHLEERGLDVRGILPVLR
FT                 ARLTRYEEAILRGTTPSGTPDPVEAVSDPFEDLGAVGPGPSVPLFTISDFG
FT                 TGNRVVRSPPQEQGTAKGEPGETGTRKREYDYTLPPRADPGPPYTGRRTPR
FT                 NSAADAYHLMRKWNLHFSGKRNSDAEAFLTRIKEARSILPVTDADLFKCLP
FT                 SFMTDYALYWVRLESENWRDWQDFEDAWRARFGDPDYHYALREEILRRTQG
FT                 EHETAADYLTSLRTLLAKVSPPWPLPEQLNFAYRNMLPRLQIAISRRDFTC
FT                 FRSLELQATRIERNFAAEKNYRPPLLPEQSLFPDLAYHPPKGKARTQGTVA
FT                 AVNVAHAGGHKGKKRVSNTPTVAAASPTTVNPPATENDTASAANIKCWNCE
FT                 KVGHRARGCAEPRRTHCYRCGKQGFTVKTCPSCSGNASGSQ"
FT   CDS           2147..5395
FT                 /product="Gypsy-7_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TRIYRKDLPIMLGKRERESVGRVPATPSQENETQTTN
FT                 KDTEALGCSYGTFENAPLPPLRYFNIKIRGHTLAALVDSGSNRTLLGREGI
FT                 QIVRALGLSTEPERSVQIRTANGQIATIRERVKLPIKLEGKDTVITAGLLP
FT                 DLAVPCILGLDFLSKVRVGLDFAKDEWYFSEIPNIRYRFDTEEACRACSGL
FT                 AELTGDQQERLDFFLQTLPEPSENPGVTELIEHKIDVGNTSPIKQRCYLVS
FT                 PKVQEAIRAEVDKMLNAGIIEPSYSEWSSPIVMVKKPNGKYRFCLDFRKVN
FT                 SVSKKDAYPLPNMTGILDKLRSARYISTIDLSQAYFQIPLAKESREVTAFS
FT                 VPGKGLYHFTRMPYGLTGAPATFQRLLDRLIGPEMEPFAFAYLDDIVIVTP
FT                 TFDEHVAWLRRVLEKIKSAGLTVNPDKCEFCRSQVRYLGFIVQQEGLTVDP
FT                 EKTRPILEYPEPRNIKQLRRFLGMSSWYRKFIPQFATLSQPLTSLLKKGRR
FT                 WEWGEIEDRAFEHIREHLVRAPTLACPNFELPFMLQTDASSVGLGAVLTQN
FT                 IEGTERVIAFASRVLSDPEKKYTVTEQECLAVVWAIQKFRPYLEGYKFTVV
FT                 TDHSSLRWLHNLKNPTGRLARWALELLEYDYVVEHRKGALHHVPDALSRMF
FT                 EGENEIVVNAVMDVVDCEDTRDEWYRKRFKEVVTDPKRYGHWKVVDKQLYF
FT                 LRARPVISDIVEDLDRWKLVLPHESRIEALRESHDAPQAGHLGVEKTYQRL
FT                 AVSYFWPNMFRDVTKYIRACDICQRTKVEQASPAGLMGRRIVEGPWVVVAA
FT                 DIVGPLPRSKAGFQYLLVIQDLFTKWVECKALRAATGPKIREALEELVISR
FT                 WGTPKVLLTDNGTEFVNRIIREFAEENRITHTTVPPYHPQANPVERVNRIL
FT                 KTMIIAYIEKDHREWDMHLADLRFAYNTAFHSSLGTSPAFLNLGRELLPKE
FT                 LLRERDKDVTEVVPTDTANWSQRMKKLQTVRQWVTDNLDQANQRQAQRYNL
FT                 RRRSRVFKVGDLVLKRQHVLSSAAQNIAAKLAPKFQGPLRIRRVISPLVYE
FT                 LENLEGSAVGKIHIQDLKAYVIPISD"
XX
SQ   Sequence 6537 BP; 1648 A; 1518 C; 1759 G; 1611 T; 1 other;
     aattttggcg cccaacgtgg ggcccacgcc gcgttaccgt aaaattaatt aagtggagaa        60
     tcggagaaca ggcagtcgta gatgaaatat tatattatcg aaaatttcgt attgctatct       120
     ccttgtgtgt aaccttcctt cctttgactt tcgtgctgtc tattgttttg attccgacgg       180
     acgactctga gttaccgcga ccttggaatt ccggtgccta cagcacgcac gcttgctgtg       240
     tgcgccttac tatagcctgc gtaatattca cttacggttc gcaaggattt ttgtgtactg       300
     cctgtgggaa aattgttacc gcttacgtat aaataacgtt gagtttccga tagattagtg       360
     ataccgtaaa ccactgtatg ttacgagtgg aaaagaatca cgctgcagtg aaagtactgt       420
     acgtggaaaa ttaaagtttt tttttgaata ttactgtgga aatatcgtaa cgaataattg       480
     agtctgaacg ttactattgg ttaatgccct tggaaattgt tttctcgcct gtggggagcg       540
     ttcgcattta tttggtgtgt aagattttag aaaagatttt cgttggtgat tcggcttcga       600
     ttttttattc gcgaccttcg ctgttttcgt tcgtgcgctc tcaaaatagt ccgtcagccc       660
     gtgtctgcgt gctcgtattt acgtttcggg tgactcgaga ttccgttccc tttgtgtctc       720
     gactgcgatt atcgaatcgt gccttgtggc aagttgagac tttataagtt accgaacttt       780
     aggctttatt ttttttttct ctcgcgcgtt tggggttacc gctattcgat cgataccgct       840
     ttagtgagtg agttaccgat ttttcttaat tgaggatacc gtttgagggg ggaagaaaaa       900
     tggcgaataa agatccgcat cactggatcc agaaattgac ggaggagcag gcgcgacagc       960
     atttagagga gcgagggctc gacgtccgcg gaatattacc ggtcctccga gcgcgattga      1020
     cgcgatatga ggaggcgatc ctcaggggga caaccccctc cgggaccccc gaccccgtgg      1080
     aggccgttag cgatccattc gaggatctag gagccgtggg accggggcct agcgttccgt      1140
     tattcactat tagcgatttt ggtaccggaa accgcgtagt gcgatccccg ccacaggagc      1200
     agggtaccgc aaaaggggaa cccggagaga cggggacgag gaagcgagaa tacgattata      1260
     cgcttccccc gcgggcagat cccggtccgc cgtataccgg ccgacgcact ccgcgcaact      1320
     cggccgcaga cgcctatcac ttaatgagga agtggaatct ccacttctcg ggaaagcgga      1380
     atagcgacgc ggaagctttt ttaacgcgca tcaaggaggc tcgctccatt cttccggtta      1440
     ccgatgccga tctctttaag tgcttaccgt catttatgac agattacgcc ttgtattggg      1500
     ttcgtttaga gagcgagaat tggcgagatt ggcaggattt cgaggacgct tggcgcgcac      1560
     gctttggtga tccggactat cactacgctc ttcgggagga aatattgcgg cgaacgcagg      1620
     gcgaacatga aactgccgcg gattatttaa ctagcttacg aacgttactt gcgaaagtaa      1680
     gtcctccttg gccgttaccg gagcagttaa actttgctta ccgtaacatg ttaccgcgct      1740
     tacagatagc gatctcgcga cgcgacttta cgtgtttccg ctccctagag ctacaggcga      1800
     cgcgaatcga acgtaatttc gccgcggaaa agaattaccg accccccctc ctaccggaac      1860
     agtcgctctt tccggactta gcataccatc caccaaaggg caaagcacga acccagggga      1920
     ccgtcgccgc ggtaaacgtg gcccatgcgg gcggccataa gggaaagaag cgagtcagca      1980
     atacgcccac agtcgccgcc gcgagtccta caacggttaa cccccctgct accgaaaatg      2040
     ataccgcatc ggccgccaat ataaaatgtt ggaattgtga gaaggtgggc catcgcgcgc      2100
     gaggatgcgc ggaaccgcga agaacccact gttaccgctg cggtaaacaa ggatttaccg      2160
     taaagacctg cccatcatgc tcgggaaacg cgagcgggag tcagtagggc gggtacctgc      2220
     gactccaagc caggaaaacg agacccaaac tacgaataaa gataccgaag cgttaggctg      2280
     ctcgtacggc acattcgaaa acgcaccgtt accgcctctc cgttatttta atattaaaat      2340
     acgtggtcac actcttgcgg cgctagtcga ttccggatca aataggaccc tcctcggtcg      2400
     tgagggaata caaatcgtaa gggctttagg tctctccacg gaaccggaga ggagcgtaca      2460
     gatacgtaca gccaatggac agatagctac gatccgcgaa agagttaagt taccgataaa      2520
     actggaggga aaagataccg tgattaccgc cggattgtta ccggatttgg cagtgccgtg      2580
     tattctcggg ttagattttc tgtcgaaagt tagggtggga ttggattttg ccaaggacga      2640
     gtggtatttt tctgaaatac cgaacatacg ttaccgcttt gataccgaag aggcttgtcg      2700
     cgcgtgttcc ggattagcgg aattgacggg ggaccagcag gaacggctag attttttttt      2760
     acaaacgtta ccggagccgt cggagaaccc gggagttacc gaattaatag agcataaaat      2820
     agatgtaggg aacacgtcgc cgattaaaca acgatgttac cttgtctcgc cgaaagttca      2880
     ggaagccatt cgggccgaag tagataaaat gcttaatgca ggaataatag aaccatcgta      2940
     cagcgagtgg tcaagcccaa tagtaatggt gaagaaaccg aacgggaaat atcgattctg      3000
     cctagacttt aggaaagtaa atagcgtatc gaaaaaagac gcgtatccgt taccgaatat      3060
     gaccggcatc ctcgataaat tacgatcggc gcgatatata tcaaccattg acttaagtca      3120
     ggcatacttt cagataccgc tagcaaaaga gagtcgtgaa gttaccgcct ttagtgttcc      3180
     cggaaaggga ttgtaccatt ttacccgcat gccgtacgga cttacggggg ccccggcaac      3240
     cttccaaagg ttactcgacc gcctgatcgg cccggagatg gaaccgtttg cgttcgcata      3300
     tttagacgac atagtaatag tcaccccgac attcgacgag cacgtagcgt ggctgcggcg      3360
     ggtattagag aaaatcaagt ccgcagggtt aacggtcaat cccgataaat gcgaattttg      3420
     cagatcgcaa gtgagatacc tcggatttat tgtacagcag gaagggctaa ctgtggatcc      3480
     cgaaaagaca cgccctatcc tagagtatcc ggaaccgcgt aacataaaac aattgcgacg      3540
     atttttgggc atgtcctctt ggtaccgtaa atttattccg cagttcgcga cactcagtca      3600
     gcccctaact agccttttga aaaaaggcag gcgctgggag tggggggaaa ttgaagatcg      3660
     cgcgttcgaa cacattcgcg aacatctagt aagggccccg acactcgcct gtccgaattt      3720
     tgagttaccg tttatgctgc aaacagacgc aagttcagtt ggtttaggag ccgtattgac      3780
     acagaatatc gagggtaccg agcgagttat cgcgtttgct agtcgcgtat tatccgatcc      3840
     cgaaaagaaa tacacagtta ccgaacaaga atgtttagcc gtggtatggg caatacagaa      3900
     atttagacct tacttagagg gatacaaatt taccgttgtt accgatcata gtagtttgcg      3960
     atggttacat aaccttaaga acccgaccgg cagattagcg agatgggctc tcgaattatt      4020
     ggaatatgat tacgtggtag aacaccgaaa gggtgcactt catcacgtgc cggacgcgtt      4080
     gtcgcgcatg ttcgagggcg agaacgaaat cgtcgtaaac gcggtcatgg acgtagtgga      4140
     ctgcgaggac acgcgtgacg agtggtaccg taaaagattc aaagaagttg ttaccgaccc      4200
     caagcgatac gggcattgga aggttgtgga taaacaatta tattttctga gggcacgacc      4260
     ggtgatttcg gatatagtag aagatcttga taggtggaag ttagtgttgc cgcacgaatc      4320
     ccgcatcgag gcattgcggg agtcgcacga tgccccacag gcaggacact taggagtcga      4380
     gaagacttat caacgtcttg ctgtatctta tttttggcct aacatgtttc gcgacgtcac      4440
     caaatatatt cgggcgtgtg acatatgcca gcgcactaaa gtcgagcagg ctagtcccgc      4500
     cggattaatg ggacgtagaa tagtggaagg accgtgggta gtggtagcag cggatatcgt      4560
     gggaccgtta ccgcggagta aggctggttt ccagtatctg ctggttattc aggatctatt      4620
     taccaaatgg gtggaatgta aagcgttgag agcggctacc ggcccgaaaa taagggaagc      4680
     tctcgaagag ctcgtaatat cgcgatgggg aactccgaaa gtcttgctaa cggacaacgg      4740
     taccgaattc gtaaaccgaa ttataagaga atttgcggag gaaaatcgaa tcacgcacac      4800
     gacggtaccg ccataccacc cacaagcgaa tccggtggaa cgagtaaatc gcattttaaa      4860
     gacgatgata attgcgtata tcgaaaagga ccatcgggag tgggatatgc atttagccga      4920
     ccttcgtttt gcgtacaata ccgccttcca ctcgtctttg gggacatccc cagcatttct      4980
     gaatctggga cgcgaactgt taccgaaaga attattgcgc gagcgagata aagatgttac      5040
     cgaagtcgtt ccgactgata ccgctaattg gtcgcaaaga atgaaaaagt tgcagacagt      5100
     taggcaatgg gttaccgata atttggatca ggcaaatcag agacaggcac agagatataa      5160
     tttacgtaga cgatctcgcg tgttcaaggt tggcgatttg gttctgaagc gacaacatgt      5220
     attgtcttcg gccgcgcaaa atatcgcggc gaagctggca ccgaaattcc agggaccttt      5280
     acgaatacga cgagtgatct ctccgttggt ttacgagttg gagaacttgg agggatcggc      5340
     cgtcggaaaa atccatatcc aagaccttaa ggcttacgtt atcccgattt ccgattaaat      5400
     taggttaccg aattaagtta ccgccggcat gataaacgcc gatacaaggc gcctatggcg      5460
     ccaattctac gcccgccacc tgccagtgtg gcaattcgtc cgccagaacg acgaagggtt      5520
     ctggacggac ctggaggaca cggcgcggct agtacgggac gcgcagtgga ccgacaaggg      5580
     ggcggtggta aggggtttcc ccgagatgag ggaccagacc atcgaggttc gtcccgaaac      5640
     cgtccaccga gaggtccagg taccggttac cgagcggcgt tctgtgggga ctcaaacccc      5700
     caatataccc gcgacgatac cgcccgattc aggaagaggc cagcccacca cccccagaag      5760
     cgaagcgggg caaaccagcc ccgggatgct ggaattgtgg ctcggggggc caccgctata      5820
     cggagtgccg cctcgcccga aagcgggagt tctgcttcgg ctgcggggag caggaggtca      5880
     cggtgaggac gtgcccaagg tgcagcgccg tctataaggg cacccgccct tacaccggac      5940
     ctcgaggacc acgggaccga aactgaggga ggatcgggcc gcccgcgagk tttttttttg      6000
     ttttcctttt tttttctttc tttcttccca tttctctttt gttccttttc ttttagttag      6060
     aacatctgtg ttttcctttt tttttgtttt ggggtcgtgc atcgggctgc gaccgttata      6120
     aaaagatgta tttttttttg tgttgccgct cctgttaccg tactccgtta aggtgtaacc      6180
     gttaccgttt ttgtttttgg tctatggttg tattggtgcg gatattaaac gctttatagt      6240
     ttgcacatga atgggggcaa ccccggtttt gtctttcact atttttcctc tccctcgtct      6300
     tccctgaacg attaacgaca cattagcgaa aatttaaggg tgatactgtc ggatctgggg      6360
     aggaatctga gtggtttgac taatagtgag aatttttttt gtgttgttgt tttggatata      6420
     gcgctgtctg acaagatgcg gtttttgtgt cggaaggcac aggggctgcc agagtggtgg      6480
     ccagccctgg tcgctggagt tcaagacctc ttcggtcctc cccagggaag ggggagt         6537
//
ID   Gypsy-7_MoPha-LTR repbase;    DNA;    INV; 1869 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1869
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1171-1171 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1869 BP; 427 A; 487 C; 519 G; 436 T; 0 other;
     tgtgacgtaa cgcgtccggt cgcgttcgtc acaagggcgt aagctcgacc gagggggtcg        60
     atttggggct cctcctcgct gagacgaggg ggacgtgact ttgttttacg tttatttctt       120
     tcttttctag tttccgcgtt accgtatcag attaattagg gtatttagga ctaaggcgcc       180
     gagtgaaggc ttaatcttat tgtaccacga acggaggagg agcagccatc gggggaaaaa       240
     gtagcgcgag cagtcgacag taggagaggt gccccgcgca gagtttcccc gccgagccgt       300
     gcaccgagcc cggctgatta ttaccgccct gagccgcctg gataccgccg ccctgaggat       360
     accgtggcaa aaacgatacc gcatagcagc cggaaggatt catgagagga atcacgccga       420
     gggcacgcca ccgggctgca aaccggggga gcgaccgtca agctgtcatc cgccgccacg       480
     tagatcggtt tggtcacggc atggccagcc gggccgaccg aaaatggcag agcgttaaca       540
     ctcgcctcgg cggaagtcgt cacgcgcgga ccacgaggca gttcgagagg cgaagcggcg       600
     ccgcatgaga tcgaggcgtg cggatcgacc gaaaatcgaa gcacgcgcat gcgcggcggc       660
     tcgagccggc cggcgcggga ccggggctcc tcactgttcg gcaagccgtg actgtgcgta       720
     cttggcagag gacgagcccg agataccgaa atcgctaccg aagacttcag agaccaggac       780
     tccgttcatt attgtaaggc cagcactcgg cagccatcga ttaagtaaga ttcggaaaag       840
     gcggtcaacc ctcgtgcggg accggatacc ggataccgtt tccgctggtg attgcggcga       900
     tccgaatccg atatagttag tgatatttgt tgtgtaacgt aactcgaagt aaagagtaga       960
     gttttgtggc cgcacgaggg ctcggaccga ccggccccga agaattgata ccgcgagtac      1020
     gtccctctcg gactacgccg gagccgacag tcataggatt agaatcattg ttaccgcgac      1080
     ttgtttccgc cattattgat tttgtctttg tgcgagcgga gagcctcgcc ggcctcctgc      1140
     cgcgtattat caattttgtc ttctccacct tgtggtgtct ctaatgagtt tttgtctcta      1200
     tcacagtaaa attcgtgcat taattgtata cagacgcatt gagtaagctc cttgcagcct      1260
     tgttaccgtt ttcagtagag aaatataaaa tattcttttg ttgtttaatc agtgagtacc      1320
     gaatctttat acgacctgcc tcgatccgac atctccacgc cttccgtctc aaaaagaacc      1380
     acgccactct atcgtctcgc gagaaagagc taccggcact tgtaacgctt tccagttggt      1440
     taccgtatta tagctgatta ttgtgtggcg cgagaagtcg cgcctggcgc ccaacaattt      1500
     agcgtattgg gaagttaccg ttcttgcaag ctaccgctat cgtatcaagg gcaacctcga      1560
     tcgatattgg gggataccgt atacaagata ccgctatcgt gtcgagagcc atctcgcccg      1620
     atatttgggg gataccgtct atgagttacc gttctcgctt cgagcgtaag cctcgagcga      1680
     gtgggggata ccgtatgcaa gctgctgata ccgtatcgag agcattctcg agaaatattg      1740
     agactaccgt tctaataact atcgcatcta actggaagag cgttactcgt taccgcatat      1800
     atagaaattc ccgtttaatt gagcgtagcc ccctcggacc tggcgttccc gagggaaagc      1860
     tacgttgca                                                              1869
//
ID   Gypsy-7_MSe-I repbase;    DNA;    INV; 4332 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4332
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 885-885 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..4135
FT                 /product="Gypsy-7_MSe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSKSDEDTASGERQEMASKSPKKLNIMGNIKPMSLEG
FT                 NLSTNWKRWYQSFVIFMKASAIFDEPDDRKVAVLLHFIGNECLDIFNTFNL
FT                 NIENVKFSQLVEKFEQYFVPKRNITYECYKFFTTKQKVDESLEDFLTRLIN
FT                 KSKSCEFGSLQDRMIKDIFITNMHETFHHVREKLLLEEDLSLEKARNLAKS
FT                 IVSAKTHAEEFKESSSNVFYQSQSSTKPQSRASSKSRARSQSQDRTKCTKC
FT                 GQVHKYMCPARYAKCRKCKIRGHYEACCKSKSVKLIHVAKSENVKVNVSNN
FT                 MLIGNLNSSHSKKAEWSIDLTINNINIKCILDTGSDANVMSYNLFKSLNVV
FT                 KEFSPCHAIVTSYCGNTIPILGQQTFNCVFSIGSQKQIKNIKFIIAKVSSP
FT                 TVLGKNTCTELGLVKRVFNIEKLNNCQSQNNMASLTKCHKMSKFTNSNINC
FT                 QLQAHENNSEFKSCYVKKDTHIENLLSKFKCVFDGLGCLPGECHITINNDI
FT                 RPKIDSPRKIPFSLHDRLKKELDNMESMDVICKVTEPTSWVSSLLLVEKKN
FT                 GQLRVCLDPRNLNEAICRSHYPIPTIDNVRSKLHGASYFSTLDASSGFWVI
FT                 RLDLESSMLCTFNTPFGRYRFKRLPFGINCAPEIFHRIMTETFGVLPGVMV
FT                 YADDILVYGKDRQEHNENLQRVLMKAQQVNLKFNKSKCKFGHTQVKYLGHI
FT                 FSQQGVSPDPEKVRAIKDMPSPMCLKDLQRFLGILNYLGAFIKNLSEETEP
FT                 LRHLLKKSSEWLWNESHEAIYTRLKNIICQAPVLSHYNVKKSVLLSVDSSQ
FT                 SAVGAVLLQDNHPICYASKTLTSSQKHMAQIEKELYAIVFGCIRFHQYVYG
FT                 KIVSVETDHRPLVTLFKKPLAEVPTRLQRLMLRIQAYDLRVEYKPGIKMYI
FT                 ADSLSRAALPESSEDELDEDVRVHVNMLVNHLPITAERLQWLTKATEQDES
FT                 LQLLKNYYQNGWPDRKSEVNKLVLPYWNCRHEIHAVKGLLLKGNSLIIPKE
FT                 LRPEILKMIHSGHQGIEKSKNFARGVVYWPLMSHDIQQCVENCEICLSHRN
FT                 ANPPQPLMSHKISSFPWEKVGIDFLQFKGQTIVVVEDYYSNYIEIANVSST
FT                 GAKALINVLKPIFSRHGIPVKIMSDNGPPYSSQEFKQFIDSWGICHTTSSP
FT                 YLSRSNGLVESGVKIIKRILTKCAESGDDPHLALLQYRTTPRGNLPSPAEL
FT                 LMSRRLRTLIPTVVKHLQPKITSHKEYRKIKQHNNVKQKFYFDKKSKELSK
FT                 VKKGDRVMFKKSPDSKWQSGKVIKECDEPRSFIVEAPDGCTFRRNRQHLLC
FT                 PPSSSLNKENIPENLTESQEISQSQKEEVRKEEPIKGILKTRSGRQVNLPV
FT                 RFQD"
XX
SQ   Sequence 4332 BP; 1562 A; 673 C; 805 G; 1292 T; 0 other;
     tggtgtcaga agtcaattca atcaaaaaag aaaaatgtct aaaagcgatg aagacacggc        60
     aagtggcgag cggcaagaaa tggcttccaa atcgccaaag aagctcaaca ttatgggtaa       120
     tatcaagccc atgagtctag aaggaaatct gtccacaaac tggaagagat ggtatcaaag       180
     ttttgtcatt tttatgaaag cgagcgccat ttttgatgag ccggatgacc gcaaagtggc       240
     tgtcttgttg catttcattg gcaacgaatg tcttgatata ttcaacactt tcaacctaaa       300
     catagaaaat gtaaaatttt cgcaactggt cgaaaagttt gaacaatact ttgtacctaa       360
     aagaaacatt acatatgagt gttacaaatt tttcactaca aaacaaaaag tagatgaaag       420
     tctagaagat ttcctaactc gtcttataaa taagagtaag tcatgtgaat ttggtagtct       480
     ccaagataga atgataaaag atattttcat cactaatatg catgaaactt ttcatcatgt       540
     cagagaaaag ttgttacttg aagaagatct gtcattagaa aaggcgcgaa accttgctaa       600
     aagcattgtg tcagcgaaaa cacatgcaga agaatttaag gagtcttctt ccaatgtctt       660
     ttatcaatct cagtcatcaa ccaaaccaca gtcacgagcg agctcaaagt caagagccag       720
     gtcgcagtct caagatagaa caaagtgtac taaatgtggt caagtgcata aatacatgtg       780
     tcctgctaga tatgcaaagt gtagaaagtg caaaattaga ggacattatg aagcgtgctg       840
     taagtctaaa tctgttaaac tcatacatgt agcaaaaagt gaaaatgtca aagttaatgt       900
     gtcaaataat atgctaattg ggaatttaaa ttcaagtcac tctaagaaag cagaatggag       960
     tattgattta acaattaaca acatcaatat aaaatgcata ttggacacgg gcagtgatgc      1020
     caatgtaatg tcatataatt tatttaagtc actaaatgtt gtcaaagaat tttcaccttg      1080
     tcatgctata gtaacttctt attgtggaaa taccatacca atattaggtc aacaaacatt      1140
     taattgtgtt tttagtattg gtagtcagaa acagataaaa aatattaaat ttattattgc      1200
     aaaagtgtcg tcaccaactg tacttggtaa aaatacttgt acagaattgg gtctagttaa      1260
     aagagtgttt aatattgaaa aattaaacaa ctgtcaaagt caaaataata tggctagtct      1320
     aactaaatgt cataaaatgt caaaatttac aaatagcaat ataaattgtc aattacaagc      1380
     acatgaaaat aattctgaat ttaagtcatg ctatgtcaaa aaagatactc atatagagaa      1440
     tcttttgtct aaatttaagt gtgtatttga tggattgggc tgtctaccag gtgaatgtca      1500
     tatcacaatt aataatgata tccgtcctaa aatagattca cctcggaaaa ttccattctc      1560
     acttcatgat agactgaaga aggaactaga caacatggaa agtatggatg tcatctgtaa      1620
     ggtcactgag ccaacatcat gggtaagttc acttttatta gttgagaaaa agaatggtca      1680
     acttagagtc tgtcttgatc caagaaactt aaatgaagct atatgtcgat cacattatcc      1740
     aatacctact attgataatg tacgatctaa gttgcatggt gcatcatatt tttctactct      1800
     ggatgcgagt agtggatttt gggtaatccg tctggactta gaaagttcaa tgttgtgtac      1860
     attcaatact ccttttggtc ggtatagatt taaaagattg ccatttggta ttaattgtgc      1920
     ccctgaaata tttcatcgta ttatgactga aacatttggt gttttgcctg gagttatggt      1980
     ctatgctgat gatatattag tctatggcaa ggatcgtcaa gaacataatg aaaatttaca      2040
     aagagtatta atgaaggcac aacaagtcaa tttaaaattt aataaaagta agtgtaaatt      2100
     tggtcacaca caagtcaaat acttaggtca catattttca caacaaggtg tgtcaccgga      2160
     tccagaaaaa gtcagggcta tcaaggatat gccgtctcct atgtgtctta aggatctaca      2220
     aaggtttcta ggtattttaa attatttagg agcatttatt aaaaacttgt cagaggaaac      2280
     tgaacctctc cgtcacttat taaaaaagtc aagtgaatgg ctatggaatg aaagtcatga      2340
     agctatatat acacgtctta agaatattat ttgtcaggca ccagtattgt cacattataa      2400
     tgtcaaaaag tcagttctct tgtcagtaga ttcaagtcag tcagcagtcg gtgcagtctt      2460
     gcttcaggat aatcatccaa tttgctatgc ttctaaaact ttaacgtcaa gtcagaaaca      2520
     tatggcacag attgaaaaag aattatatgc cattgtcttt ggatgtattc gttttcatca      2580
     atatgtctat ggtaaaatag tctctgtcga aacagatcat cgtccattag ttactttatt      2640
     taaaaagcct ttagcagaag ttccaacgcg tctacagagg ttaatgttga gaatacaagc      2700
     ttatgattta agagtggaat acaaacctgg tattaaaatg tacatagctg attcattgtc      2760
     tcgagcagct ttaccagagt ccagtgaaga tgagctggat gaagatgtca gggttcatgt      2820
     caatatgctt gttaatcact tacctattac agcagaacgt ctccagtggc tcaccaaggc      2880
     tacggaacaa gatgaaagtc tgcaactact gaagaattac tatcaaaatg gatggcctga      2940
     tagaaaatct gaagtcaata aattagtctt accttattgg aactgtcgtc atgaaataca      3000
     tgctgtcaaa ggtctgctat taaaaggtaa cagtcttatt atacctaaag agttgagacc      3060
     agaaattctg aaaatgatac atagtggtca tcaaggtata gaaaagtcaa aaaattttgc      3120
     aagaggtgtt gtatattggc cattaatgtc acatgatata cagcaatgtg tagaaaattg      3180
     tgaaatctgt ttgtcacaca gaaatgcaaa tcctccacaa cctctaatgt ctcataagat      3240
     tagttctttt ccttgggaaa aagtcggtat agatttttta caatttaaag gtcaaactat      3300
     tgttgtcgtc gaagattact attctaatta tatagaaata gctaatgtca gctcaacagg      3360
     agcaaaagca ttaataaatg ttttgaagcc tatattcagt cgtcacggga ttcctgtaaa      3420
     aataatgtca gataatggtc caccctacag ttcacaagaa tttaagcagt ttatagattc      3480
     ttggggtata tgtcatacaa cgtcaagtcc ttacctatca cggtcaaatg gattagtgga      3540
     atctggagtg aaaataataa agcgcatact taccaaatgt gctgagtctg gagatgatcc      3600
     tcatcttgcc ttgctgcaat atagaaccac acctagagga aacttaccgt ctcctgctga      3660
     attattgatg tctcgtcgtc tcagaacact aatacctacc gttgttaagc atctgcaacc      3720
     taaaataaca agtcataagg aatataggaa aataaaacaa cataataatg tcaaacagaa      3780
     attttatttt gataaaaaat ctaaggagtt gtctaaagtc aagaaaggag atagggtgat      3840
     gttcaaaaaa tcacctgatt ctaaatggca atctggaaaa gtcataaagg aatgtgatga      3900
     acctagatca tttattgtcg aagccccaga tgggtgtaca tttagaagaa ataggcaaca      3960
     cttgttatgt cctccgtctt caagtcttaa taaggaaaat attccagaaa atttaacaga      4020
     gagtcaagaa ataagtcaaa gtcaaaagga ggaagtgaga aaggaagaac ctataaaggg      4080
     tatacttaaa actagaagtg gtagacaggt caatctccca gtcaggtttc aagattaagt      4140
     atatgtttga taaatgtcaa gtgtaattgt ctaagtaaat tttaagtctg taagttacac      4200
     aaatgtataa gtaacatgtc atataagtta aggaatgtaa aagttataag tcaaatgtat      4260
     atgttgtcat tctgtgaaac tagtcttaag tctcaattgt ctttgttaaa aacaaaaaat      4320
     gaaaaaggga ga                                                          4332
//
ID   Gypsy-7_MSe-LTR repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-198
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 876-876 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 198 BP; 61 A; 44 C; 29 G; 64 T; 0 other;
     tgttacatag tgatgtagtc tcagcttact aaagtgacat cactatgtgg cgtccttccg        60
     gccactgtca cttccacaca cacgtcccga tagcgtctgg tcatgtctga ttataattat       120
     gtttatagtc ttaattaata aatatatatt gtcataaacg acagtgtcat tattcatcaa       180
     atacacaacc acaataca                                                     198
//
ID   Gypsy-7_OrIn-I repbase;    DNA;    INV; 4258 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4258
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1548-1548 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..4256
FT                 /product="Gypsy-7_OrIn-I_1p"
FT                 /note="SAP at the N-terminus, retropepsin, reverse
FT                 transcriptase, ribonuclease H, and integrase."
FT                 /translation="MATLDYKFYTAAGLREILQQRNLDTTGTKLELLQRLI
FT                 DSDANDEKLRRKQKVNDRRSKPNDETHVSDVKNDDDVNDRDDDDDDXHDRD
FT                 DDDDDDLHDNDDDFYDVHDNDDQKARVSRRYPNLIAFRDMETCVENFSGED
FT                 DAMGVRQWLKNFNDMAKLCELSEVQKLIYGRRLLTNSARRFINYERPFKTW
FT                 KQFQAALITEFAPISSSKIVHEKMQRLKPKTNETLTEFLYRMLEISKEADI
FT                 EISCVFQYVIENIDDRPENKMILFGAKTCKEFREKLKLYENMKSLSKVTMK
FT                 SPKQTIGPVTSSPTVTSSTRITTSRSDMKRCYNCGGRNHESNTCKFIENGP
FT                 RCFNCSDFGHKSKDCPKRKQGTERVNVTRKRVTMHPPARPSPNARSDAFST
FT                 PIVTPLTLQDADLYGLLDSGADINLIRQSCLRRINIKLRNDEITFNGIGSH
FT                 EFKTNGCFTETIKIKDEDYQLDFHVVDDNLIPYDLILGRQFLDYVELLLQN
FT                 SKIISIKKIYDVPKIFSINRTDTDLDVGLPAYNNFVADLHKNYDPIPSKFS
FT                 EVKLKICLTDDVPVRQAPRRLAPIERGIVNDLVKEWLDNGIIQPSQSEYAS
FT                 PIVLVKKKDGGSRLCVDFRRLNRKIVKDSYPLPLIEDQIDRLFGARIFTTL
FT                 DLKNGFFHVPLDTESRKFTSFVVPDGQYEFLRAPFGLCNSPAAFVRFINSI
FT                 FHDLIADGTMMLYVDDAIIPGRDEKDAVEKLEKVITRCKEYGLMINWNKSK
FT                 FFHFEIDYLGHLVSNNTIRPSDAKTYAIRNFPMPKTKKALQSFLGLAGYFR
FT                 KYVRNYALIAKPLTDLTKDGVNFEFQDPQIYAFEKLKELLCTTPVLRIYDP
FT                 EAKTELHTDACSQGYGAILLQYDENGTKLHPVYYMSMKTTEAESKRSSYEL
FT                 ELLAIVKALAKFRVYLLGLKFNIVTDCSALQTTLTKKDLSPKIARWALKMD
FT                 EFDFTIEHRAGKNMAHCDALSRNPTAYLIRTELLERVKNLQNDDSESRAVV
FT                 ELLKYGPYKSFVMSNDLLYHEDDNKYRRLVIPRGMQSEVIMKAHEMGHIGV
FT                 KKTKELLEREYYFPNMTSKIEKIIKNCVPCILTERKRGKIEGTLHPIDKGD
FT                 VPLETLHIDHLGPLTSTAKGYKHIFVVADAFSKFVWLYPTKSTTTNEVVDK
FT                 LELQFATFGFPRRIITDKGSAFTSDVFKKFCNDRQIDLIHITTGVPRGNGQ
FT                 VERVNQVIIPILTKYSLDSPQHWYKHVKRVQTAINGSYHRSIGTTPFKLLI
FT                 GTDMRSPDELRLKEIIEEECARFYSEKREELREKAKRQIAKIQEENIHTYN
FT                 KKKKEATKYKVNDLVAIKRTQFVTQSKTKRKFLGPYKISKILGKDRYEVRK
FT                 VGGDEGPRITTTSAENIKIWHQDDGSSGTDDGDGRE"
XX
SQ   Sequence 4258 BP; 1418 A; 824 C; 918 G; 1097 T; 1 other;
     aaattggggg ccgctttcgt taattgtgga ttttgtttgg cggcgaggga tacatcgaaa        60
     tggcgacgtt ggactataag ttttatacgg ctgcgggact tcgggaaatc ttacaacaac       120
     gaaatctcga taccacaggt acgaaacttg aattacttca acgtttaata gattccgatg       180
     ctaacgatga aaaattacga cgaaaacaaa aggtcaacga ccgcaggtca aaacctaacg       240
     atgaaacgca tgtttccgat gttaaaaacg acgacgatgt aaatgataga gacgatgatg       300
     acgacgackt gcatgataga gacgatgatg atgatgacga tttgcatgat aatgatgatg       360
     atttttatga cgtgcatgat aacgatgatc aaaaagcgcg cgtttcccgt agatacccaa       420
     atttaatcgc atttcgcgat atggaaacgt gtgtagaaaa cttttcgggt gaagatgatg       480
     cgatgggcgt tcgacaatgg ctgaaaaatt ttaacgatat ggcaaaactt tgcgaactct       540
     cggaggttca aaaacttatt tacggacgac gtttgttaac gaattcggca cgccgtttta       600
     tcaattatga acgacctttt aagacgtgga aacaatttca ggccgctttg ataaccgaat       660
     ttgccccaat ttcgtcgtca aaaatagtac acgaaaaaat gcaacgactt aaaccgaaaa       720
     caaatgaaac tttgacggaa tttttgtaca gaatgttaga aatatcaaaa gaagccgata       780
     tcgaaatttc ctgcgttttt caatacgtca tagaaaacat tgacgatcgt cccgaaaaca       840
     aaatgatttt gtttggtgca aaaacttgca aagaatttag ggaaaaatta aaactgtacg       900
     aaaatatgaa aagtttgtcg aaagtaacga tgaaaagccc gaaacaaacg atcggaccgg       960
     tgacctcgag ccctacagta acctcctcga ctcgtatcac cacgtcgcgc agcgatatga      1020
     agagatgtta taattgcggg ggccgaaatc atgaaagtaa tacgtgcaaa ttcatagaaa      1080
     atggtccacg atgttttaat tgttccgact tcgggcataa aagcaaagat tgtccgaaac      1140
     gaaaacaagg cacggaacga gtgaacgtta cgaggaaaag ggtaaccatg catccgcccg      1200
     cccgcccttc gccgaacgca agatcagacg cgttttcaac ccctatcgtt actcctttga      1260
     cgcttcaaga tgccgactta tatggtctac ttgattctgg agccgatatt aatctaatta      1320
     gacaatcatg cttacgtcgt attaacatta aattgagaaa tgatgaaatt acgtttaatg      1380
     gaataggatc tcacgaattt aaaactaatg gatgttttac tgaaacgatt aaaattaaag      1440
     atgaagacta ccagctcgat ttccatgtcg tagacgataa tctcatacct tacgatttaa      1500
     ttttgggacg acaatttctc gattatgtcg aactattact tcaaaattcg aagattattt      1560
     caattaaaaa gatttatgat gttccgaaga tattttcgat taatagaaca gataccgatc      1620
     ttgacgtggg ccttccagct tataataatt ttgttgcaga tttgcataaa aattacgacc      1680
     cgattccatc caaattttcg gaagtaaaat taaaaatatg tcttacggac gacgtaccag      1740
     tacgacaagc gccacgccga cttgccccga tcgaaagagg gatagtcaac gatcttgtta      1800
     aggaatggct ggacaacggc attattcaac cctcacaatc ggaatatgcc agcccgatag      1860
     tgctggtgaa gaagaaagac ggtggatcaa gactatgtgt ggattttcga cgacttaaca      1920
     gaaagattgt taaagacagt tacccgcttc cgctgataga agatcaaatc gatagattat      1980
     ttggagcacg catattcacg actttagact tgaaaaacgg tttttttcac gttccacttg      2040
     atacggaaag tcgaaaattt acatcattcg tagtaccgga tgggcaatac gagtttcttc      2100
     gagctccttt cggcctttgt aattctccag cggcttttgt gagattcata aacagcattt      2160
     ttcatgatct tattgctgat ggtacaatga tgttgtacgt tgatgacgcg attattcccg      2220
     gacgtgatga aaaagatgcg gtggaaaaat tggaaaaagt tataacacga tgcaaagaat      2280
     atggattgat gattaattgg aacaaatcga agttctttca ttttgaaatc gattatcttg      2340
     gtcatttggt ttctaataat acgattcgac cttccgatgc caaaacgtac gccatacgaa      2400
     attttccgat gccgaaaacg aagaaagcct tacaaagttt tctcggtctt gcaggctact      2460
     ttcgtaaata cgtcagaaac tacgctttga ttgctaagcc actaaccgat ttgactaagg      2520
     acggagttaa cttcgagttt caggatcccc agatttacgc ctttgaaaaa ttgaaagagt      2580
     tattgtgcac tacacctgta cttcgaattt acgacccaga agcaaagact gaattgcaca      2640
     cagacgcatg ttctcaagga tacggagcga tattacttca gtacgacgag aatggaacaa      2700
     aactccatcc agtttattac atgtcgatga aaacgacgga agctgaatcg aaacggtcga      2760
     gctacgagtt agaacttcta gcgatagtaa aagcgctcgc gaaattccgt gtatatctgc      2820
     ttggcttaaa atttaatatt gtgactgatt gctctgcatt gcaaactacg ttgacaaaga      2880
     aggacctttc gccgaaaata gcacgatggg cactcaagat ggacgaattc gactttacga      2940
     tcgaacacag agcaggaaaa aatatggctc attgcgatgc gcttagtcgt aatcctacag      3000
     cttacctaat tcgaacggaa ttgctggaac gagttaagaa cttacagaat gatgacagcg      3060
     aatctcgtgc agttgttgaa ttgttgaagt atggaccata taaatcgttt gtgatgtcga      3120
     atgatctgct ttaccatgaa gacgacaaca aataccgacg gcttgttatc cctagaggta      3180
     tgcagtctga agtcatcatg aaagctcatg aaatgggaca tattggagtt aagaagacaa      3240
     aagaattgtt ggagagagaa tattatttcc ctaatatgac atcaaagatt gagaagatca      3300
     taaagaattg tgtaccttgc attcttacgg agaggaagag aggtaaaatc gaaggaacac      3360
     tgcacccgat cgacaaaggc gatgtacctt tagagacgct tcatatagac catctaggac      3420
     ctctaacaag tacggcaaaa gggtacaaac atatatttgt ggttgccgac gccttttcga      3480
     agtttgtatg gttatatcca acgaagagta cgacgacgaa tgaagtagta gacaagctag      3540
     aacttcaatt tgccacattc ggatttccaa gacgaatcat tacagacaag ggatcagctt      3600
     tcaccagcga cgtttttaag aaattttgca atgatcgaca gattgacttg attcacatta      3660
     cgaccggcgt acctcgagga aacggccagg tggaaagagt taaccaagta atcattccca      3720
     ttctgaccaa gtactctttg gactctcctc aacattggta caagcatgtc aaacgtgtcc      3780
     agactgcaat aaacgggtca tatcatcgat cgatcggtac tacaccattt aaactgctga      3840
     taggaactga tatgcgttcg cccgatgaac tgagactgaa agaaatcatt gaagaagaat      3900
     gcgcacgttt ttattccgag aaacgggaag aactccgcga gaaagcaaaa cgtcaaatcg      3960
     cgaaaattca agaagaaaat atccacacgt acaacaagaa gaagaaagag gctactaaat      4020
     acaaggtgaa cgatctagtc gctattaaac gtacccaatt cgtcactcag tcaaaaacga      4080
     aacgaaaatt tttgggtcct tacaaaatct ccaagatttt gggaaaagat cgctacgaag      4140
     tcaggaaagt aggcggcgac gaaggcccga ggatcacgac gactagcgcc gaaaacatta      4200
     aaatctggca ccaggacgac ggttcatccg ggacggatga cggggatggc cgagagga        4258
//
ID   Gypsy-7_OrIn-LTR repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-247
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1577-1577 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 247 BP; 72 A; 34 C; 73 G; 68 T; 0 other;
     tgtagggttg tcgaagtgac gtcatgcgag cgtcagagat aagagtgaag tgccgaaagg        60
     gacgatggga gagtttttgg agaaggtgag aagagagggg ttgccggggg agttttttcg       120
     attacaaggc gtgcagtaaa gagtgtccga tgttaaatta agttgtattt tgaagtttaa       180
     tgacgatttt aataaaaaca gtgtaattaa gccagttctt ttgtgtctac tcaccccaaa       240
     ccccaca                                                                 247
//
ID   Gypsy-7_OsLi-I repbase;    DNA;    INV; 4322 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-4322
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2017-2017 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           215..4291
FT                 /product="Gypsy-7_OsLi-I_1p"
FT                 /note="Putative DNA-binding (bihelical) motif SAP,
FT                 zinc finger, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSDAGNDTIVDVTLQGSSASDRLKAVESMKLVELKEE
FT                 LKKRKLRTSGNKRELQDRLRAALTLEIEHGEDEDEGECNEDEDERGQDCVR
FT                 ECTRRMQVLTFRDVEESINTFSGDNKENIRCWLQEFEDMAELCEWSDVQKV
FT                 IYAKRLLRGSAKMFVNYEKCCRKWSEMKRALRSEFSQVVDVHKIHKELSRR
FT                 IKKSNETYQEYVYHMLEIAKQADMEVSAVIKYIIDGVQDEESNKMILYGAR
FT                 SIRELKEKFESYETMKENSRTKSRRTEEKTKKTIRGTTAQENVRRCFLCGD
FT                 RNHLSVDCPTKSKGAKCFKCKKYGHIAPECGGVKKPVKDVSSTSEESRKKR
FT                 VKDVQIEHCKLVALIDSGSDLNLMRADHYIKIGAPKLNNRILQFRGVGTGK
FT                 NYTMGEFLTNILIDDTTYSINIHVVPDALTPHGLIIGTDFLDSVELTMKGG
FT                 EILIKKLDVPEVFNIHVDNGNEIDLSHISISEHREVIQDLIDSYEPHKTHE
FT                 VGVTMNIVLSDDIPVYQRPRRLSPGEKVEVDKQISVWLKEGIVQPSHSDYA
FT                 SPIVLVKKKNGSIRICVDYRQLNRKVIKDRYPLPLIEDELDSLQGATIFST
FT                 LDLKNGFFHVPVEETSRKYTAFVVPNGHYEFLKAPFGLCNSPAVFQKFMHA
FT                 VFREVIVAGFARIYLDDVIILARDVISAIKNLKTVLEVASQYGLLINWSKC
FT                 SFLQTRVEYLGHIIENGCVRPSEHKTKAVIKFPKLQCVKDVQSFLGLTGYF
FT                 RKFIYGYSMIARPLTNLLKKDNKFKFETLEQEAFEKLKLSLSSSPVLKLYR
FT                 VGAETELHTDASSLGYGAILLQRDNVDGAFHPVYYASGKTTPAEENYPSYE
FT                 LEVLAIIKSLRKFRVYLLGISFKIVTDCQAFAMTMNKKDLCVRVARWALLL
FT                 EEFQYKVEHRSGKNMKHVDALSRHPLPTIMFVNEVGDGLIVKLREAQNEDT
FT                 DLRKIRDNIVEYRADGYIVKNDVLYRVLNDVPLVVVPKPMQVQVVRRAHER
FT                 GHFGVTKTEILLRRDYWFKGIRQKVEKVIRSCVDCILAERKHGKQEGLLNT
FT                 IDKGELPLNTYHVDHLGPLPSTRKSYRHIFAVVDAFSKFVWLYATKTTNSA
FT                 EVIAWLKKQAVIFGNPVRIISDRGTSFTSDAFKDYCSSENILHVLITTGIP
FT                 RANGQVERINRTLIPLLTKLSSPKPEEWYKYLGVAQKYLNATPHRSINTTP
FT                 FHLLFGTHMRIREDPEIRKLIEEEWIAMFQMDRDEVRKRAKEKIVEVQAQN
FT                 RKTFNKNRKEAMKYKQGQLVAIKRTQAAPGLKFHAKYLGPYRIVKVLRNNR
FT                 YVVQKAGEHEGPQTTSTAADHMKPWRINEEDDFSEDCDSACSDDENI"
XX
SQ   Sequence 4322 BP; 1416 A; 631 C; 1090 G; 1185 T; 0 other;
     taatttttgg gggctcagcc gggatttgaa ccagacaaat tgactgtgtc gtctgtgttg        60
     aacaagttgt gttgagttga atacactgtg ttgagttgga tacactgtgt tgagttgaat       120
     acactgtgtt gagttgaata cactgtgttg agttggactg tgttgaaatt gagttgcatt       180
     tgtgaagaga gttgaatttg aagaatctac caagatgtca gatgcgggaa atgatacaat       240
     agttgatgtt acactgcaag gtagctctgc cagtgacagg ctgaaggccg tagaatcgat       300
     gaaactggtt gaattaaaag aagaattaaa gaaacggaaa ctgaggacaa gtggaaacaa       360
     gagagaattg caagatcgac taagagcagc gttgacatta gaaatcgagc atggtgaaga       420
     tgaagatgaa ggtgaatgta atgaagatga agacgagcgt gggcaggact gtgtcaggga       480
     gtgcacgagg cgcatgcagg ttttaacgtt tagggatgtt gaagagtcca taaatacgtt       540
     cagtggcgac aataaagaaa atattcgttg ttggctgcag gagttcgaag atatggcgga       600
     gttatgcgaa tggagtgatg tgcagaaggt aatatatgcg aaacgactgc ttcgtggatc       660
     agccaaaatg ttcgtcaatt atgaaaagtg ttgtcgtaaa tggtctgaga tgaagcgagc       720
     gttaagatca gagttttcgc aagttgtaga cgtgcacaaa attcacaaag aattgtctcg       780
     gagaattaag aagtctaatg aaacatatca ggaatatgta tatcatatgt tggagatagc       840
     gaaacaggca gatatggagg tctcagcggt cattaaatac attatcgacg gagtacaaga       900
     cgaagaatcg aacaaaatga tattgtatgg agcgagaagc attcgtgaat tgaaggagaa       960
     gttcgagtcg tacgagacta tgaaggaaaa ttcaagaacg aagagccgac ggactgaaga      1020
     gaagacgaag aagacaatcc gtggaactac agcgcaggaa aacgtacgaa gatgtttttt      1080
     gtgtggagac cggaatcact taagtgtaga ttgcccgacg aagagtaaag gtgctaaatg      1140
     tttcaagtgt aaaaagtatg gacatattgc gcctgagtgt ggcggtgtga aaaaacctgt      1200
     aaaagatgtg agtagtacgt cagaggaatc acggaaaaag cgtgttaagg atgtgcagat      1260
     cgagcattgt aagttagtag cattaattga ttctggtagc gatttaaatc taatgcgagc      1320
     agaccattat attaaaattg gagcgcctaa attgaataat agaattttgc aatttcgtgg      1380
     cgtaggaaca gggaaaaatt acacaatggg agaatttcta actaatattc taatagacga      1440
     tacaacctat tcaataaata tacatgttgt gcctgatgca ttgacaccgc atggtttgat      1500
     aataggtact gattttttag actcggtaga actcaccatg aagggaggag aaattttgat      1560
     taagaaatta gatgtaccag aagtttttaa tatccatgtt gataatggaa atgagataga      1620
     tttgtcgcat atttcaattt ctgaacatag agaagtaatt caagatttga ttgatagcta      1680
     tgagccgcat aaaactcacg aagtaggggt tacaatgaat atcgtgttga gtgacgacat      1740
     acctgtatat cagagaccgc gtagattgtc ccctggtgag aaagtcgaag ttgataagca      1800
     aatatctgtg tggttaaaag aggggatcgt gcaaccgtct cattcagatt atgctagccc      1860
     aatagtttta gtgaagaaaa agaatggctc aattagaatt tgtgtggact atagacagtt      1920
     gaatagaaag gttataaaag acaggtatcc cttgccgtta atagaggacg agctggattc      1980
     cttgcaaggc gcaacaatat ttagcacttt agatttgaag aatgggtttt tccacgtacc      2040
     tgtcgaggag acgagtcgaa aatataccgc gtttgttgta cctaacggtc attatgaatt      2100
     tttaaaagca ccttttgggc tgtgcaattc acctgccgtt ttccagaaat tcatgcacgc      2160
     agtatttaga gaagttatag tagctggttt tgcccgaata tatttagatg acgtaataat      2220
     tttagctagg gatgttatta gtgcaatcaa aaatcttaaa actgtattag aagttgccag      2280
     tcaatatggg ttgttaataa actggagtaa atgtagcttt ttgcaaacaa gggttgaata      2340
     tttggggcat attattgaaa acggatgtgt tcggccttcc gaacataaaa ctaaagctgt      2400
     aattaaattt ccgaagttgc aatgcgtaaa agatgtacaa agttttcttg gtttgacagg      2460
     atattttagg aaatttattt atggttattc aatgattgct cggccgttaa caaatttgtt      2520
     gaaaaaagat aataaattca aatttgagac attagaacaa gaagcgtttg agaagctcaa      2580
     gttgagtttg agtagttcac cggtattaaa attgtatcgt gtaggcgctg aaactgagtt      2640
     gcataccgat gcttctagtt tgggatatgg agcgatattg ttgcagcggg ataacgtaga      2700
     tggtgcgttt catcctgtgt attatgctag cggtaaaact acacctgctg aagagaacta      2760
     tcctagctac gaactagagg ttttggcgat cataaaatct ttaagaaaat tcagggtgta      2820
     tttattggga atatcgttta agatagtgac cgattgtcaa gcgtttgcaa tgactatgaa      2880
     taagaaagat ttatgtgtgc gagtggcaag atgggcgctt ttgttagaag agtttcaata      2940
     taaagttgag catagatcgg ggaaaaatat gaaacatgtc gatgcactga gtaggcatcc      3000
     gttacctaca attatgtttg ttaatgaagt tggtgatggt ttgatagtta agttgcgtga      3060
     agctcaaaac gaagacactg atttgcgaaa gattcgtgat aatatagtgg aataccgagc      3120
     ggatggttat attgtaaaga atgatgttct ttatcgagtg ctgaatgatg taccgttagt      3180
     ggtcgtacct aagcctatgc aggtacaggt agtccgtcga gcgcatgaac gtggtcactt      3240
     cggggtgaca aagaccgaaa tattattgcg aagggattac tggtttaagg ggatacgtca      3300
     aaaggtagag aaggtcattc gaagctgcgt ggactgcatt ttagctgaac gtaagcacgg      3360
     taaacaggag ggacttttaa atacaataga taaaggagaa ctaccgttga atacgtatca      3420
     tgtcgatcac cttggcccat tgccttctac gagaaaatct tatcgacata tttttgcggt      3480
     tgttgacgca ttttcgaagt ttgtgtggtt gtatgcaaca aagacaacaa attcagctga      3540
     agtgattgcg tggttgaaaa aacaagctgt gatattcgga aatcctgtgc gtatcatttc      3600
     cgaccgtggt acaagtttca catccgacgc ttttaaagac tattgtagta gtgaaaatat      3660
     acttcatgtg cttataacga caggaatacc gcgagctaat ggacaagttg agaggataaa      3720
     taggactctt ataccgttgc ttactaagtt gtcttctcct aagccggagg agtggtataa      3780
     atatttggga gttgcacaga aatatttgaa cgccacccca cacagaagca ttaatacaac      3840
     gcctttccat ctgctgttcg gaactcatat gagaatacgt gaagatcctg aaattcgtaa      3900
     attaatagag gaagagtgga ttgcaatgtt ccagatggat cgtgacgagg tacggaaacg      3960
     ggcaaaagaa aaaatcgttg aagtccaggc acaaaataga aagacattta acaaaaatcg      4020
     taaagaggct atgaagtata agcagggtca attggtggca attaagagaa cgcaggctgc      4080
     gcctggttta aaatttcatg ctaaatactt gggaccctat agaattgtaa aagtgctacg      4140
     aaataaccgt tacgtggtac aaaaggcggg agagcacgaa ggtccccaga caacgtcgac      4200
     agccgccgac catatgaagc cttggcgcat caatgaagaa gatgattttt ccgaggactg      4260
     tgacagtgca tgtagtgacg atgaaaacat ctgaggacag atgtagaatc agaatggccg      4320
     aa                                                                     4322
//
ID   Gypsy-7_OsLi-LTR repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-276
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2027-2027 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 276 BP; 66 A; 40 C; 94 G; 76 T; 0 other;
     tgtggtaacg tagtttaagt cttagcgtag tttgtatttc taaaggtagg aagagagtca        60
     taaaagagaa aggcggtgac gaaaaccagg cccaagggtc ggttagagtt tttccgggcg       120
     agacctaggg ccctagcgag gggtgcgggt gtgtgaaggg cgaggtatgg gtgtgctttt       180
     gcgggatgag ggagacttga gctgactttc gaggagagaa gtgcgtagtg tttgcgagct       240
     atcttggcaa ttttgtattt cattcatttt accaca                                 276
//
ID   Gypsy-7_PBa-I repbase;    DNA;    INV; 7848 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-7848
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 683-683 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..1599
FT                 /product="Gypsy-7_PBa-I_1p"
FT                 /translation="MASAERSETDDRNDLEAEMNAFRKEREIMRDVVEMIA
FT                 TLRNEVAELRNVTDHRNEQLSEVPSGQPFLNPRISYPDVSEAASDLPPAPR
FT                 ISYREATEFVPYYDGYNIPLNKFISACRQARDILPPNYERPLTRLLIAKLR
FT                 GRAHSAVADEPCESVTQLTDLLVSAFGSIKSVAQYRGELTAIHIKAREHIL
FT                 DYIDRVKELRSAVIDGERRARGRLDREITNEIDILTAECFCNGLPTVYRLQ
FT                 LKPEHYLNPFEAFTAAKLIAKREELEKQWLEIRPERNAERYPMSRHAARYC
FT                 MAQSIPPPQQTSPKKYQPISIRDTHYQNNYREPTRVPFQSPQDANRYREPP
FT                 RDKYEIRYRDERSRVDNQKHHKAIIQTNRVRKYPIKLSRRQKEIIMKQH"
FT   CDS           2268..5789
FT                 /product="Gypsy-7_PBa-I_2p"
FT                 /translation="MGYIPRLEIHKDIYAGEALVENRDGKAYLQIINAGEI
FT                 DREVVIPTIRMQEVEFIENKSCHNHSPLPFIPNASSVNLVSRTNAQERITR
FT                 IRDLLRLDHLNKEEQHHVEGLLEKNSDLFHLPDDKLKYTNASAHKIITRDE
FT                 KPVNTKQYRFPPIHKEEITRQVNELIENEVIEPSKSPYNSPLWIVPKKRDS
FT                 KGNKRWRMVIDYRSLNEKTIGDAYPLPNITEILDQLGSAKYFSIFDLASGF
FT                 HQIPMHEPDAHKTAFSTPFGHYQFKRMPFGLKNAPATFQRLMDQVLTGLQG
FT                 NELFVYLDDIVIYASSLKEHNDKFTKLATRLRNANLKLQPDKCEFLRKEVT
FT                 YLGHVIGERGVQPDPEKVKAVQAFPAPKNQKNIKQFLGLAGYYRKFIPDFS
FT                 EIARPLTALLKKESNFIWEEEQQQAFTSLKNTLCTEPLLQYPDFTRPFIIT
FT                 TDASNYAIAGILSQGTIGKDLPIAYTSRTLNTAEQNYSTIEKELLAIVYSV
FT                 NYFRPYIYGRKFTLVTDHKPLTWLNSVKDPTSRLARWRLKLAEYEYEVIYK
FT                 AGKSNVNADALSRNPIIQTLPLRLREKANSTSSDDTDESLYXAQAADKPNK
FT                 ESARDKTAISDDDVDSDDSQSETQNSSDDDSNSSDNESLFESANTMVRPHR
FT                 EFLTEINSYLAQRKDNVAIFVTNQGEPVDQGAQDLARHNLIPEIKNVEIGK
FT                 AKIMENKKRYIIVLILEKGVSETIERDNLKLAIGSLLNAARELNLESISIS
FT                 KGAIGNIQWNTTHKILRDTFWNEVTKIIICTHKVSTPPAEQRREIIIENHA
FT                 STIGGHKGITKTYERIKEKYYWPQMKRDVQNEINNCRECQIKKLVRIKPRQ
FT                 PMVLTDTPEKAFDKISIDIMGPLPVTNSGNQYILTIQDLLTKHSTAIPLKN
FT                 PGAIDVADALTHDFICIYGAPKAILTDQGTHFLNSLMKNIARKFKIKQFKT
FT                 TAYHPQSNGSVERSHHVLWEYLKQFVNTNNEWDKCLKIANFSYNTSVHEGT
FT                 RFTPHELVYGKLARTPIDKDNLDNEQNESYANYLENLYDKISQAQSIARDN
FT                 LIKAKHKSKYYYDRKSRERNLRVGDDVYLLKEPIRNKLADQYTGPFEIIQL
FT                 LENNNVKILIKHGKTRIVHIDKLKRKGSRSPHLAEPPPGIQEDIVEDEPEG
FT                 IRTHSTTTAKTWPYT"
FT   CDS           5777..7762
FT                 /product="Gypsy-7_PBa-I_3p"
FT                 /translation="MALHLIAILILPTLTAALTGYNCGGNGLNITTLSLLD
FT                 IGKCDLEHIEPIKTDIFIQLLQTSEFETINVYQCKLEIDRNVYHCGMHSHV
FT                 SVVTEGKKQYVKEMGAYNCKKLHETGTATLGNAVVDRLIINSTNYRSVTLA
FT                 GIAYSDGRCAGAQYTDGYGTWEDVVVQATVKITLRTFTTPLKRTADKITLN
FT                 SGTQCTASQGGCNDYDGTETYWTVPPYDSCHFNRYDVLYEGTAVKLSPRDN
FT                 QTAPEIYTVTTDDTTFALARTTEVNVCGYKLYNTEHPKLLIFETQRGRTFQ
FT                 SKTRISVDNLDIFTYVNSKFVYVEKHVKTQLTRLYRDIMEQKCAMEQQILQ
FT                 NALSLSSIAPDEMAFRIMKSAGYTAVTAGEIIYIIKCVPVQCRIRRTEECY
FT                 NELPVTYKNSSYFLLPRSRILTKTGTIKDCNELLPNLFKIDEIWYRATTNM
FT                 VESLPPPVIQPLTKPAWKYVSPDTLATSGIYTTEDLDRLRNHIMFPVEKPS
FT                 MLNTIARGAMGQDVPRGSISMINLLDEEALDHIAESAGKRLWDGFITFGSA
FT                 SAGVLALFIIGRLIKLIIDTLIHGYAIHSIYGWSLYLLGALWSSVTSLILF
FT                 LGKSRKNEDSGGKERTFIAEYHPAAPVEDSTNNAQPGTSEQINEQRTDSDE
FT                 LSYVELRKILLQK"
XX
SQ   Sequence 7848 BP; 2781 A; 1775 C; 1594 G; 1695 T; 3 other;
     aactggtgac agcggtggga tascgtaaaa gccaccgtat gaatgaattt ctcttctaaa        60
     ttcgagtttc gacgtaacgc ttatattctt gcatgcccac taactgcatg aaaaataata       120
     aatactcggg ctctccgaaa accgattacg catgtcactc ctacaaattg taagagttta       180
     aatcattaaa actttaatta atccacaagg ctctgmttgg cgggaaaacc gcccggagac       240
     cttacagacg ttgagttccc gctcgttggg aaattgttaa acctgcaaag aaaaactctt       300
     cgcgtaaaat cctcttttaa aatctccaaa tctaaaatcc ctcatgcaga gaacgcccgt       360
     cgcaatgaat acgcgatcga ataagcgagg tctcccctcg aggaagacgt tgaacatgga       420
     tgcatggcat ccgcggaacg ctccgaaacg gacgatagaa acgatttaga agcagaaatg       480
     aacgcttttc gcaaggaacg agaaataatg cgcgacgtcg ttgaaatgat cgcgacattg       540
     cgtaacgaag tagcagaatt gcgaaacgtt accgaccatc gcaacgaaca attatcagaa       600
     gtcccatcag gacaaccttt cctaaatccg cgaatctcat atcccgatgt aagtgaggcc       660
     gcgtcagatt taccaccagc accaagaatc tcatatcgcg aagcgaccga gttcgtccca       720
     tattacgacg gttataacat accactgaat aaattcataa gcgcttgtag acaagcacga       780
     gacatactac cgccaaacta cgaacggcct cttacacgac tgttaattgc aaaattaaga       840
     ggcagagctc actctgcagt agcagatgaa ccatgcgagt cagtaacgca gctaactgac       900
     ttattagtga gcgcattcgg ctccataaaa agcgtcgctc aatatcgagg agaattaacc       960
     gcgatccaca taaaggcgcg agaacatatt ctagattaca tagaccgagt aaaggaactc      1020
     agatccgcag taatagacgg cgaaagaaga gcgcgaggta gattagatag ggagataacg      1080
     aacgaaatag atattctgac ggcggaatgc ttttgcaacg ggctgccgac tgtttatcgc      1140
     ctccagttga aacccgaaca ttatcttaat cccttcgaag cattcaccgc cgcgaaattg      1200
     atagccaaaa gagaggagct agaaaaacaa tggctggaga ttagacccga aaggaatgca      1260
     gagagatacc ctatgtcgcg tcatgccgcg cgatattgta tggcacagtc gataccgccg      1320
     ccgcaacaga cgtcacccaa aaagtatcag ccgatatcta ttcgagacac tcactatcaa      1380
     aataattatc gcgaaccgac tcgggttccc tttcagtcgc cgcaagacgc aaacagatac      1440
     cgcgagccgc cacgagataa atatgagatt agatatcgcg atgaacgcag ccgcgtagat      1500
     aatcaaaaac accacaaagc cataatacaa acgaaccgcg tgagaaaata cccgataaaa      1560
     ctatcgcgca gacaaaagga aataattatg aagcagcatt aaaatggtgc cgctattgta      1620
     aagcgcgcgg gcacgaaata gaagaatgta ggaaaagaga atattacaat aaaccaataa      1680
     tccgttcggg aaacgcgaaa gatccgctcc gaaaaccgga cgcgacacgg gcggatcccc      1740
     agtacgccac gcgtccagta aacacgataa ccaatgcaga agaaacgaat caaccgagca      1800
     cgagcaatac agcatcgcaa ccttaaatcc aagagaattt aatcaggcac ctactgccac      1860
     gttaacgata aaaggcttaa tgccggacgt aaaatttatg attgacacgg gtgccgctcc      1920
     aaacctaata aaggaacgaa atattctttc tcatacttca atatctaagg acgacatttt      1980
     atatctcagt ggaataacac agggaaagat cgcgacccta gggtctatgc aattagactt      2040
     tctcggatat aaaatcaaaa tgcacgctgt gcctaataac ttcccaatcg tgcaggaagg      2100
     gatcttagga tcggacttcc tctgcgacaa tgcaacaata gactttccta ggaagcttct      2160
     attgtggcag ggaatagaaa ttccgttcgc tcaacacgac tcaatcgtcg ttcctgctag      2220
     atcgcgaact accttctata tcaacatcga aaatcccgaa tatcaaaatg ggatatatac      2280
     cgcgactaga aattcataag gatatatatg cgggtgaagc cctcgttgaa aaccgcgacg      2340
     gaaaagcata tttgcaaata atcaacgccg gagaaataga tcgggaagta gtaataccga      2400
     ctatccgaat gcaggaagtc gaattcattg aaaataaatc ttgccacaac cacagtcctc      2460
     ttccatttat ccccaacgct tcgtcagtga acttagtgtc acgaacgaac gcccaggaaa      2520
     gaataactcg aattcgtgac ctgctacgcc tggatcattt aaataaagag gaacaacacc      2580
     atgttgaagg cttattagaa aagaatagcg atctattcca tcttccggac gataaattaa      2640
     aatataccaa tgcgagtgcg cacaaaataa tcacgcggga tgagaaaccc gtcaatacga      2700
     agcaataccg ttttccacca attcataagg aagagatcac gcgacaagtc aatgaactaa      2760
     tagaaaacga agtaatagaa ccttcaaaat ctccatataa ttctccctta tggattgtgc      2820
     ctaaaaagcg agattccaaa ggaaacaagc gatggcgtat ggtaattgac tatcgttctc      2880
     ttaatgaaaa aacgataggc gatgcatatc cattaccgaa tattacggaa atactagacc      2940
     aattaggcag cgcaaaatat tttagcatct tcgacttagc gtcaggattc catcagatac      3000
     cgatgcacga gcctgatgca cataaaactg ctttctccac gccattcggg cactaccaat      3060
     tcaaacgcat gccttttggg ctaaagaacg cgcccgctac attccaacgg ctcatggatc      3120
     aggtattgac tggcctacaa ggcaacgaat tattcgtcta cctagacgat attgtaatct      3180
     atgcgagctc actaaaggag cacaacgata aatttactaa gctagcaaca cgtcttagga      3240
     atgctaatct taaactacag cctgacaagt gcgaattcct gcgtaaggaa gtcacatact      3300
     tgggtcatgt aataggcgaa cgaggtgttc agccagaccc tgaaaaggta aaagctgtgc      3360
     aagccttccc agctccaaag aaccagaaaa atatcaagca atttctcggc ttagccggat      3420
     attaccgaaa atttataccc gatttctctg aaatcgcgag gccgctgacg gcacttctga      3480
     aaaaagagag caattttata tgggaagaag aacaacagca agcttttact tcattaaaaa      3540
     acacattatg tacggaacca ttgctccaat acccagactt tacgcgacca ttcataatta      3600
     ctacagacgc atctaattat gctatagcag gcatattaag tcagggaaca ataggaaaag      3660
     acttgcctat agcgtacaca tctcgaacac ttaacactgc cgaacagaat tactcgacaa      3720
     tcgagaagga gttactagcc atagtataca gcgtgaatta ttttcgcccg tacatatacg      3780
     gtaggaaatt taccttggta actgaccata agcctctaac gtggttaaac tcagtaaaag      3840
     atccaacctc tagattggca cgatggcgac ttaaattagc agagtacgaa tacgaggtaa      3900
     tatacaaagc cggaaaaagc aacgtaaatg cagatgccct ttccagaaac ccaataatcc      3960
     agacactgcc attgagactt cgagaaaagg caaattccac atccagcgac gatactgatg      4020
     agtcactgta tmacgctcaa gcggcagata aaccgaacaa agagagcgct agagacaaaa      4080
     cagcgataag tgatgacgac gttgacagcg atgactcaca atccgagacg caaaactctt      4140
     ctgacgatga tagcaatagc tcagataacg aatccttatt cgagagcgca aatacaatgg      4200
     tacgacccca cagagaattc ctaacagaaa ttaacagtta tttagcccaa cgaaaggata      4260
     atgtagcaat ttttgtaaca aaccagggag aaccggtaga tcaaggggcg caagatttag      4320
     ctagacacaa cttaataccc gagataaaaa acgttgagat aggaaaggcc aaaataatgg      4380
     agaacaagaa acgatacatt attgtattaa tattagagaa gggagtatcc gaaaccattg      4440
     aacgcgataa cttgaaactt gccataggat ccttgctcaa cgccgcgcgc gagctaaact      4500
     tagaatcgat atcaataagc aagggagcga taggaaacat acagtggaac accacgcata      4560
     aaatattaag agatacgttt tggaacgaag taacaaaaat tataatatgc acacacaagg      4620
     ttagcacacc gccagccgaa cagagacgcg aaataatcat cgaaaaccat gcatccacaa      4680
     taggaggcca taaaggcatc acaaaaacgt acgagagaat taaagaaaaa tactactggc      4740
     cacagatgaa aagagacgta cagaatgaaa ttaacaattg tcgtgaatgc cagataaaga      4800
     aattagtacg aataaaaccg cgtcaaccta tggtcctcac ggacacgcct gaaaaggcat      4860
     tcgataaaat ttcgatagat atcatgggtc cgctacctgt gacaaattcc ggaaatcagt      4920
     atatactcac aatacaagac ctgctcacaa aacattccac agctatccct ctaaaaaatc      4980
     caggcgctat cgatgtggca gacgccttaa cacacgactt tatctgcatt tacggagcgc      5040
     ccaaagctat cctgactgat cagggtacgc actttctgaa tagcttaatg aaaaatatag      5100
     ctcgaaaatt taaaatcaag cagttcaaaa ccactgcata tcacccacag tcaaatggat      5160
     cggtggaacg ctctcatcat gtactatggg agtatctaaa acaattcgtc aatacgaaca      5220
     atgaatggga taagtgtctc aaaatagcaa atttctctta taataccagc gtacatgagg      5280
     gaacgcgctt tacaccacac gaattagttt atggaaaact agctcgtaca cctatcgata      5340
     aggataattt agacaacgaa caaaacgaga gttatgcaaa ttatttagaa aacttgtatg      5400
     acaaaatttc gcaagcacag agcatagctc gcgataatct aattaaggcg aaacataaat      5460
     ctaagtatta ctacgatcgg aaatcgagag aacgtaattt aagagtagga gacgatgtat      5520
     atttgttaaa ggaacctata agaaataaac tcgctgacca gtatacgggt ccgttcgaaa      5580
     ttatacaatt gctggaaaat aataatgtaa aaatattgat caaacatggc aaaactagaa      5640
     tagtacacat agacaagtta aagaggaaag ggagtcggag cccccacctc gctgaacccc      5700
     caccaggcat ccaagaagac atcgttgaag acgagcctga agggatcaga acgcattcaa      5760
     ccaccacagc caaaacatgg ccctacacct aatagcaatc ctcatcttac caaccctcac      5820
     ggccgcactg accggctaca attgtggagg gaatggactg aacataacca cattgtcact      5880
     cctcgacata gggaaatgtg acctggaaca tattgaacct atcaaaacgg atatattcat      5940
     tcaattactc caaacctcag agttcgaaac catcaatgtc taccaatgca aactcgaaat      6000
     agatcgaaac gtttaccact gcgggatgca ttcccacgta tcggtcgtaa ctgaaggaaa      6060
     gaaacaatat gtcaaagaaa tgggagcgta taattgtaaa aagctccacg aaacaggaac      6120
     agcgacattg ggcaacgccg ttgttgatcg cctcatcatt aactcaacca actatcgtag      6180
     tgttacgcta gctggaatcg cttacagcga cggacgatgc gccggagcac aatacacaga      6240
     cggatatggc acatgggagg acgtagtagt ccaagctacc gtcaaaatta ccctgagaac      6300
     cttcacaact ccactgaaaa gaacagcgga caaaattacg ctgaactcag gaacacagtg      6360
     cacagcatcc caaggaggat gtaatgatta cgacggtacc gaaacctatt ggaccgttcc      6420
     accatacgac agttgtcatt tcaatagata tgatgtcctg tatgaaggga cagcagtaaa      6480
     gttgtctcca cgagataacc aaacagcacc tgagatatat accgtaacta cggatgacac      6540
     aacgtttgca ttagcccgaa ctacagaagt aaacgtatgc ggatataagc tctacaatac      6600
     agagcacccc aagttattaa tattcgaaac tcaaagggga agaaccttcc aatctaaaac      6660
     ccgcatatct gtggacaatc tcgacatctt cacatatgta aattcgaaat ttgtatacgt      6720
     ggaaaaacac gttaaaaccc aactaacgag gttgtataga gacatcatgg aacagaaatg      6780
     tgctatggag caacaaatat tacaaaacgc tctatcatta tccagcatag cgccagatga      6840
     aatggcattt cggattatga aatccgcggg atacacggca gttacagccg gtgaaataat      6900
     ctacattatt aaatgtgtcc cagtacagtg tcgaatacga cgcacggaag aatgttataa      6960
     cgagctacca gtaacatata aaaacagctc atatttcctc ctacctcgat cccgaatact      7020
     tacaaaaacc gggacgatca aagattgtaa cgagctccta ccaaacctat tcaaaataga      7080
     cgaaatatgg tacagagcaa ctactaatat ggtggaatca ttgccgccac cggtaataca      7140
     accactgacc aagcccgcat ggaaatatgt gagcccagat acattggcca ctagcgggat      7200
     atatacaacg gaagacctcg atagactgcg gaaccatatt atgttccccg tggaaaaacc      7260
     ttccatgtta aacacaatag ctagaggagc gatgggacaa gacgttcccc gaggaagcat      7320
     atccatgatc aaccttctcg atgaagaagc tcttgatcac attgcagaaa gcgcaggcaa      7380
     acgcctctgg gatggattca tcacttttgg atctgccagc gccggagtat tggcactatt      7440
     tattatcgga agattgataa aactgataat agatactctg atccatgggt acgcgatcca      7500
     ttcgatctac ggatggagcc tctacctgct aggtgcatta tggtcatcag tgaccagcct      7560
     gatactattt ttgggaaaat cccgaaagaa cgaggatagt ggtggtaaag aaaggacatt      7620
     tattgcggaa taccatccag cagcaccagt ggaagactct accaacaacg ctcaaccagg      7680
     aacgagcgaa caaataaacg aacaacgaac ggacagcgac gaactatctt acgtagaatt      7740
     aaggaaaata ctgttacaaa aataagaaga ctgcgatgtc agtataagta gttataatgc      7800
     gaaaaatgtg agtccatcga ctcacatttt aaaataagga gggggggg                   7848
//
ID   Gypsy-7_PBa-LTR repbase;    DNA;    INV; 2193 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2193
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 684-684 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2193 BP; 659 A; 526 C; 431 G; 574 T; 3 other;
     tgtcacgtca agcgcgtaga catactttag aaattttcaa aacaacaatt tcaatatata        60
     aaattttaat tattacgttc aattccattt atttcagcgt atacataaga atatattaaa       120
     aataaaagac gtgatgcgtc cctggatgaa gaacatccct accacgggag ccgctggtat       180
     cccccacacg accaccgggg ccctaccatc agcgcctccc acgcaagcgc cgccgctccc       240
     accagagcgc cgccgcactt cgagccgccg aaaacgaagg agctcagtgc agaggctcct       300
     tcgggcagtt cacatcgagt ctccagccgg gaaggttcct ggctcgtgaa cacatcctct       360
     cttaggatag ggtgcgagta ctttaaattc aattcaactc tcggcacgtt agcgtgttac       420
     accgagatct tttctaattt taagaaccat tgttcaattc tatttataag actagtgcgg       480
     ttaagtcatt aatattgtaa tttgtactat tatcaattca ttttaatctc aattatacga       540
     agtgaaaatt gaaccgtgag tgattattag cgaatcccac ctatcctatc ctagcgaaac       600
     gaacgaaacg actgagttcg cgaggataaa gagatctttc aaaccacatt aaataaatta       660
     aagaacctga atgaaaacat attagttcgt tgtatcgatc ctctggattg acgctgttac       720
     gtgtttgaca cgccggcgcc tcgacgagga actacgacga tctatctatt ctaaattcca       780
     aattcaaatt atattttagt tatcaaggtt tcgtgtactc gtgcatgcac caaacgtgcg       840
     gcgctcctga gagtcgcccg cgaggcacaa caccttgtcg gaatcgtgga tagtgcgtaa       900
     aataaacgca aattaatacg gaatattgtg ttctcatgat gcattgagtt gcggcgctca       960
     ctacagagtc gcccgtgaga cataacatac cgcagataac gctatcgctt gcgtcaccga      1020
     gcgcattcct ctgtgcaaga gcacagctta gagtcacgaa ataaaaattc ataatgaatt      1080
     attacagtaa gatctctttg cgatgccact gaaacgccgt caccgttcag gccgaaagca      1140
     atcgttgaaa aaactcttta ataaattgaa cgatcgactt cctcgacatt tgcaaaacct      1200
     gcttggtgtc gagtcaggtt acgacaaaaa ctacgaacaa ttattctccg gaagcttttg      1260
     gtcaccgagg ccgcctccaa cgtggaagct gatccccatc accttccgta ctccgagatt      1320
     gccgccactg cggatgctcg ccactgatcc acggaagaag agatacatgg aaatcaggag      1380
     tgatattctc tacaactact actaaaggta ggacagatat tattgctgca tgcactcgaa      1440
     tttagaaaac cgcaaatgtg cagggaacga ctcgagagac cgcgaaaatc gaaaacttcc      1500
     cctgccgcaa tttacacgca tcgcgtaagt ctttgtcatt gcattactga attcggttac      1560
     gggttgttcg gtattgccag tgattataac aacgcaggac tcttgtgcca tcagtgcaag      1620
     gtagactgtg aacgaattca ccccgaacaa caatttcaat tggtactaag acattttatt      1680
     catatcggaa atagtcccag tgccgcgaaa gtgcgagcac tgcccgactg agttgtccat      1740
     ttgtcgcgaa ataaacaatt gcgacgcgtg cgtagacgcc ttcgttgcct ttctaaacca      1800
     tttacgagaa gaaaatcaaa cgtttgaatc actaccagat ccgacgatta tagacgtcga      1860
     taacagcatc ggaacgcatg aaattatttt ttctagaaga cttagtttct tcctaagtaa      1920
     tttacataga caaaatactm gacgagacaa ctagagtctc ccgattaaac caacaggatc      1980
     tttgccgctc gagatctctg tcatttactc gttaattaaa atcgctgcaa aattttaatc      2040
     cagaaccttt gccgctcgag gttccttacc attcccaaaa ataaaaattt ttatacgaaa      2100
     tttcccccat acagcccggt gtgaatactg ttcgatagaa tcgaatcaaa tttcgcccgg      2160
     acgtaaawac gttgcgtcat tcckgacgta aca                                   2193
//
ID   Gypsy-7_PPo-I repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-732
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2974-2974 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5'-truncated.
XX
SQ   Sequence 732 BP; 280 A; 167 C; 112 G; 173 T; 0 other;
     acaaccaagc cctaatccct ttccatccat atatagcaac agtgaaaaaa atcatgtgta        60
     catagaggca gaatcccgaa gttaagcacc tggtatctgt gcaaaagaac gtgggaaccc       120
     aaatacagcg gaggaagact gcatcataaa gcttatcgct aaccaaatct tacaatattt       180
     ccttggccaa agaagcgagg aaaaactgga cgacaacact tcgtggtgtc cttcccctcc       240
     aacgagagag aattattctc gaagggctga ctacacttcg ttacaaggaa gctacctgat       300
     taccattcct atcagttgct acttaagaac acaagaattt acaatcatta acgataacaa       360
     tgaaataaag gtcagcccct aaaacttatg aaaattccat ataatgtaaa agaacaaatt       420
     tcatcctaac catattcacc ttactctata aatcttaaga cttcacattc aggatcaagt       480
     aatgctcgaa actccaacaa aacttataaa aacatagaca ccatatacat accacaatac       540
     ccttttacat tgtcatatca gtgtagaata ttcatatcat agcctcagct ataaacgtgg       600
     aaatcaccac agaaaatccg acacctgaag aaactaaaac acaaatttac gaagtacaga       660
     agaaaagatc aagccagcag aattcccagc aaattttcgc tcaacgttct caaatagtgt       720
     ggttgggtgg ag                                                           732
//
ID   Gypsy-7_PPo-LTR repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-290
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2975-2975 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 3 or 4bp TSDs. It shows weak
CC   similarity to LYDIA_LTR.
XX
SQ   Sequence 290 BP; 95 A; 51 C; 57 G; 87 T; 0 other;
     tgttacatac atagccacaa ggaataccgc gtacgcagca ttgacgtcga tgcgacctaa        60
     atttgaagac acgaggcgca gtggcacgag gcgctaaccg ctgatgctgc ataacgtgac       120
     ccgaggcaat gttatgtgac ttaaacaata aaacattatt ccaaattcat acttcgaatt       180
     ggatagttag attagttagc aattaagatt taattgtaat ttctagtata ataaataatt       240
     ataagttaat tggttttttt tcgatcctac ggctgtagca atcgtaatta                  290
//
ID   Gypsy-7_RP-I repbase;    DNA;    INV; 4668 BP.
XX
AC   ACPB02048231;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_RP_;
KW   Gypsy-7_RP-LTR; Gypsy-7_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4668
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02048231; Positions    3822    8489.
XX
CC   Positions [3674-4147] - Integrase core
CC   'CTTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2189..2839,2843..4492)
FT                 /product="Gypsy-7_RP-I_1p"
FT                 /translation="MAVDYRELNKITLKDHYPIPRIDDHIDQLKDKVYFTT
FT                 LDLKDAFHHIKIKESSIPYTAFVTFKGQYEYMRMPFGLTNGPPHFMRFINL
FT                 AFRKLLVAEKILVYMDDILIATSSVEENLNTLIEVLEILVQNCLELKFAKC
FT                 SFLQTKINYLGYLVDDKGIRPSPANVAAVANYPVPKNFRELHSFLGLISYF
FT                 RKFIHNFAIVAQPLYKLLKSKINFVWSEESNCFERLKNFLISEPLLAIYSP
FT                 TALTELHCDASAQGYGSILMQKQSDNKFHPVCYFSKRTTEAESRYHSFELE
FT                 ALAIIYSLERFRVYLQGIPFKIITDCNSLKLTLEKKDINPRIMRWSLILQN
FT                 FEYILEHRGNERMRHADAISRHSQLMVISENSLERNLALLQDKDDDITKLK
FT                 LELEKNQSKTFELSNGLVYLKSYDLLLFYVPKSMENAVIQECHHTVGHQGC
FT                 EKTLGFLTRVYWFPNMKKKIQKYIDNCLKCITYSKKSSGKPEGKFYSYDKE
FT                 GEPFHCVHIDHYGPLATTKFKYRYIFEIIDSFTKFVKFYPVRTTNADEVIK
FT                 WLECYFSHYSKPVKLISDRGTAFSSSKFTEFCKDYGIQHVMIATGTPHANG
FT                 QIEIVNRTLTPILAKLTTSPTQWYEVLAKVEFAFNNSINRATGETPSMILF
FT                 GINQKGNHNDDLRQILEFQHPVFRDLEQSRYNAINKLQNSANYYEKYYNSK
FT                 HKAPGKYEVNDYIMIKNTDVTPGINKKLIPAFKGPYVIKNPEGHQTTQLPY
FT                 EGICSPMNMKPWLPNS"
XX
SQ   Sequence 4668 BP; 1645 A; 745 C; 872 G; 1406 T; 0 other;
     gcttcaggtg tggggtacga ggcagatcaa gttggtaaga ggaaaataaa gttatattgc        60
     aaaaaaaaat ggaacgaatt gaacattgaa aaatagtgaa gtgttgtcgt atatactatt       120
     tgattgcaag taagtaatag cagttcagat tgatcatcgg ccgtaagtaa aacccagtta       180
     catattacat tggttcattt tatttgcaaa tatgacgtca ttaggagaaa ttgatagaat       240
     taacaaaaat attagcaatt ctaccattaa cgctattcga gcacttcatt tattaatttt       300
     tgagtgcgaa ggaaatcgtc agaaaagagc tagactcaga aaattggaag gatttagttt       360
     cttgttggat tcagaagaat ataaggccaa acttaaattc atacatgaaa atttaactga       420
     tggtgacctt acactaatct gcaatattct taacattgac catgacggaa atgcggacga       480
     actagccaaa cgtatttgta caagtctaat gaatttagaa gatttaaaaa gattaaatga       540
     agaggttaat gagcaagaag atgaagatac tgaagagcaa gatgtaaaag aagaagaaaa       600
     taaagaagat gaagaaagaa gtgattcaga gttgtgttac catcccaaat ttttattaag       660
     agatatagaa gattctattc gtccttttac tggcaatgac aattacaccg ctaattgatg       720
     gattaaagag tttgaagaga tgaggaaatt attgaaatgg aacgatttgg aaacttttat       780
     atatgccaag aaatctataa aaggatttgc aaaaacacta attaattgtg agccgaatat       840
     caacagttgg gttaatttga agaaggtgtt aagagctgaa tttccaacta cgataaatag       900
     tgctactcta catcacatgt tagttaagag aaaaatgaaa aaagaagaga cacttaaaga       960
     atacttttgc cacatgcgcg aactggccgg aaggggttgt atcgaagatg atgcattaat      1020
     taaatacaca atcgacggca tcaatgatga tgttagaaac aaagttgttc tttttggctg      1080
     ctctacagtt gcagaattta agaaaagaat tgatatttat taagaaatta agttaagcag      1140
     taaagtacat caagagaaat atcaattgtt agaattcaag aaatttccag agtcaatgca      1200
     ggaaagaaga gtgaaaaatg caggaactac gggtaatgcg aatgttgttc gatgttacaa      1260
     ctgcgggaaa atgggtcatg tttcttcagc gtgcacggct ccgaaacgag aacctaattc      1320
     ctgtttcaaa tgcggatctc aaggacatca aaaaaaggac tgtccactaa tacgtcccac      1380
     atcgagacag ctcactggag gtaccacgca aaaagagact tctattggct gaattgcaga      1440
     gagctcatcg ttagcaccaa cctatgaagt aaaaattaag ccagaggtaa acgacgtaga      1500
     aattagcgcc tttttagaca gtggtagccc gatttctcta atttctgaac atattttgcc      1560
     tgttaatgtt gttataagtc cgtacacgcg taaatttcaa tttgaaggag tcaatcaaag      1620
     taaattaaat atattaggag agcttaaaca aaatgtatct gttaattcgt ttaaaattcc      1680
     aattactttc tatgttgttc cggaaaatac tataaatcct gtctgtttat taggtcggga      1740
     ttttctttca tatgatggac tgcaggttaa gtttcagggt aataatgttt gtattgatgt      1800
     taaaagtaga ttagttgaag aaccgatagg tgaatgtatt tctgatattt taaatattga      1860
     tatttccaat aacgtaaaac ttaatgaaca tgattttgat ataaataatg aattatcatg      1920
     ggaaattcaa agtaatgtta aaaatattaa ggaaaaatat aatgacgttg taaaacctaa      1980
     agagcccgta acaaacttag agctagagct cacagttaag cccgattgtc aaccattttg      2040
     tttcagaccg cgaagacttt cctatgcgga aaagttagct gtaaccgaaa ttattaatga      2100
     cttactaagt agagatataa ttcgaccaag caattctcaa tttggaagcc caatcgtatt      2160
     agtgcgtaag aaagacggaa atatccgaat ggcagttgat taccgagagt taaataaaat      2220
     cactctcaaa gatcactacc caattccgcg gatagatgac cacatagatc agttgaaaga      2280
     caaagtctac tttactacac tagacttaaa agatgctttc caccacataa agattaagga      2340
     atcctcaatt ccatacactg catttgtcac cttcaagggg cagtatgagt atatgcgaat      2400
     gccatttggc ttgactaatg gtcctcctca ctttatgaga tttataaatc ttgcatttag      2460
     gaaattgtta gttgcagaga aaatattagt ttatatggat gatatcctta tcgcgacatc      2520
     ttctgtggaa gaaaatttaa atactttaat cgaagtttta gaaatcctgg ttcaaaattg      2580
     cttagaatta aaatttgcta aatgtagttt cttgcaaacc aaaattaatt acttggggta      2640
     tttagtggat gataaaggga ttcgtccgtc cccagcaaat gttgctgcag ttgcaaatta      2700
     tccagtaccc aaaaattttc gcgaattgca tagcttccta ggattaattt cttatttccg      2760
     aaaatttatt cataactttg ctattgtcgc ccagccacta tataagttgt tgaaatctaa      2820
     aatcaatttc gtatggtcct aagaagaatc aaattgtttt gagcgactta agaatttcct      2880
     aatatcagag ccgctgttag ctatttattc acccactgca cttactgagt tgcattgtga      2940
     tgcaagtgca caaggctatg gttcaatcct tatgcagaaa cagtctgaca ataaatttca      3000
     ccctgtttgt tattttagta aaagaacaac cgaagcagaa tcgcgttatc attcctttga      3060
     gctcgaagcg cttgctataa tttactctct cgagcggttt cgcgtttatc tgcaaggtat      3120
     cccgtttaaa attattactg actgtaacag tctaaaatta acgttggaaa agaaggacat      3180
     taacccgcga ataatgcgtt ggtcgcttat tttgcaaaat tttgagtata tccttgaaca      3240
     tagaggcaat gagagaatgc gccacgcgga cgctatcagt aggcacagcc aattaatggt      3300
     gatttcagaa aatagtttgg agcgtaattt agctctgtta caagataaag atgacgacat      3360
     cacaaaatta aagctcgagc ttgaaaaaaa tcagagtaaa acatttgaat tatcaaacgg      3420
     cttagtatac cttaaaagct atgatttgct actattttac gtccctaaaa gcatggaaaa      3480
     tgctgtaata caagagtgtc atcacacggt aggtcatcaa gggtgtgaga aaacattagg      3540
     gttcttaact agggtgtatt ggttcccgaa tatgaaaaag aaaattcaga aatatattga      3600
     caactgtttg aaatgcataa cttactcaaa aaaatcgtca gggaaaccgg aaggtaaatt      3660
     ttattcgtat gataaagaag gagaaccatt ccattgcgta catattgacc attacggtcc      3720
     tttagccact actaaattta aataccgtta tatctttgaa attatcgact catttaccaa      3780
     atttgtcaaa ttttatccag tgcgtactac taacgctgac gaagtaatta aatggctaga      3840
     gtgctatttc tcccactata gcaagcccgt caagttaatt tccgacaggg gtactgcttt      3900
     cagttctagt aaatttactg aattctgtaa agattatggc attcaacatg ttatgattgc      3960
     aactggcact ccccatgcca atggccaaat tgaaattgtt aatagaacgt tgaccccaat      4020
     actagcaaaa ctgactacct cgccgactca gtggtacgaa gttttagcga aagtcgaatt      4080
     tgcctttaac aatagtatta atcgggcgac aggtgagacc ccatccatga tcttatttgg      4140
     gataaatcaa aagggaaatc ataacgatga tttaagacaa attttagaat ttcaacaccc      4200
     agtttttcgc gacctagaac aaagccgata caatgcgatt aataagttac aaaatagtgc      4260
     taattattat gaaaagtatt ataacagtaa acataaggca cccggaaaat atgaagttaa      4320
     tgattacatt atgataaaaa atacggacgt gacacctgga ataaataaaa aattaatacc      4380
     tgcttttaag ggtccctatg ttatcaaaaa tcctgagggg caccagacta cccaactacc      4440
     ttatgaagga atatgttcac ctatgaacat gaaaccgtgg ttacctaata gttagccaaa      4500
     cttatttgtt ttaagtttgc ttaatttttc aaacttaatg ttttatactt ttctaatttc      4560
     tgttttggat tctgaatgtt attgttattt attttcataa tttaaatttt aattttgcta      4620
     agaattactg tttgattgag agaccaatca aggtcaggtt ggacgagc                   4668
//
ID   Gypsy-7_RP-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   ACPB02048231;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_RP_;
KW   Gypsy-7_RP-I; Gypsy-7_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-251
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02048231; Positions    3571    3821.
XX
SQ   Sequence 251 BP; 86 A; 22 C; 43 G; 100 T; 0 other;
     tgtgggcgaa tattttaatt gtttaaaatc atattaatta ttaaataatt ataataatac        60
     ggacagatga taaaacatat gtgtgatata ttgaatgtaa aaaaatattg aagctggagg       120
     tttttgtttt atattcatat agcgttgtgt ttttttgact gccttaaccc atgttgttga       180
     ggaagaaaaa aaataataag gattcatcat tgtagtggtt gttcttattt ctcttagtga       240
     ataatccttc a                                                            251
//
ID   Gypsy-7_SI-I repbase;    DNA;    INV; 4207 BP.
XX
AC   AEAQ01015416;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SI_;
KW   Gypsy-7_SI-LTR; Gypsy-7_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01015416; Positions    8549    4343.
XX
CC   Positions [3182-3634] - Integrase core
CC   'AAAAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..4192
FT                 /product="Gypsy-7_SI-I_1p"
FT                 /translation="MTTVGNLKPFDPAIDDIEVWTRTFKAFLLANNMEYTP
FT                 IVPEEADETKILMSRRCVATLLSTLGLSVVGTLMSLLSPAQPEDKTLDELI
FT                 TILKIHYKPPPKALAERYRFMGRKQNQGESVAQFLAELRRLAANCKFDNDL
FT                 NIRLRDQFVFGLRSEVAQKQLFTKPDEVTLEDVVALATAQELSEQSLSLVR
FT                 GNTNAQQKEEVNKVTKNIPGKQSNISKNNSQYKGGGKPTYNQKYKKECQRC
FT                 GSTDHNGIKNCPHKETKCYACGKFGHLSFKCRSSGQKQYYPQSKKPQASQS
FT                 NMVDIRATEVLSTNQMEKKKIWITLKINGIPHQMEIDTGCERSMVSKEFWK
FT                 TLGKPTLSKSTLQFKTYTNEIFHAIGELNCKVKYNNETIEHVFPVTHGSSL
FT                 FGRDLLRKIKIDWADIAAQCNKIQENLTLEGILKEFSDIFEEPRGRIKKFK
FT                 AKIVLKDDATPKFMKSRPIPYAIQEKVDQELDRMEKSGIIERVDHSEWASP
FT                 LVVVPKPNGRVRITGDFKNTVNAQLHITQYPIARPEQIFNTVGGSSIYSKL
FT                 DGSNAYHQMEVEEECKKCLVVNTHRGLYRYNVLPQGISSSPAIFQEFSDKM
FT                 LQGIQRTGTYIDDTILGDTNEREHLQNLRKIFKRMRECNYYVTKEKCEFGK
FT                 SHVEFLGHILSKRGIHTDPNKVSAMEIIQRPQNVTELKSFLGLVNFYNKFV
FT                 PNFADICEPLYRLTRVNEKWNWTSKCESAFNRVKSTLVSAPMLMNYNPDLP
FT                 IGISCDASSIGIGSVLFHRIQEGGKTIEKPIAFTSRVLSAAEKNYSQIEKE
FT                 GLAIIHALKKFYRYLCGRQFILVTDHKPLVHIFNPKTTLQPYAAARLHRWS
FT                 IYMSQFQYDIEYRSTHEHGNADILSRFPDKNTLGEEEEAKEVNLIAEENME
FT                 KLPITYKEIRIATARDKVLSKVLSFINNKWPGAIEKEEEELQSYFKKREEL
FT                 TTHQGIIIWGLRVIIPKVLREKLLKNLHETHAGIVRMKALARQFIWWPNMD
FT                 KEIEELARSCTNCCSNRPDPPSAPLHPWQFPEKPWQRLHIDLAGPLQNRMF
FT                 LIIMDAHTKWPEVYDMKTDTTSKKVIEKLRDSFVRFGIPEQIVSDNGRQFI
FT                 SAEFQRFCKNNGIRHTTSSVYHPRTNGEAERFVQTFKKAVHNSEGDLTYRI
FT                 QRFLFNYRCTPHSTTGASPTELLIGRRPRSLLDLIKPDVFKTVAAAQARQE
FT                 KSYNTRVKNRKFEKGEEVWVRTFSRNKAKWSLGTIIKALGPVTYLVRVGDQ
FT                 HYKRHVDQMYNAMPLQLNFEKAPENDALSRRLIKKEPDSDSTSPEGNEEER
FT                 PETAEEGAGSSESEQSNSREHPGQNRNENTPSCGRPQRTRKPPDRLEYKAR
FT                 GTQKEYGSK"
XX
SQ   Sequence 4207 BP; 1601 A; 746 C; 866 G; 994 T; 0 other;
     tatttggcga cgaggagaaa actgaacgag acgaataatt ctatcaagaa aagagtgagg        60
     ttagaatcat cacagaatga cgacggtagg caatttgaaa ccttttgatc cggcaataga       120
     tgatatagag gtatggacac gtacttttaa ggcatttcta ttagcgaata atatggaata       180
     cacgccaata gtaccagaag aagcagatga aacaaaaata ctcatgtcga gacgatgtgt       240
     agcaacctta ctgtccacgt taggtttgtc agtagtagga acattaatgt ctttgctctc       300
     tccagctcaa ccggaagaca agacacttga cgaattaatc acaattctca agatacacta       360
     caaaccaccc ccaaaagcac tagcagaaag atatcgcttc atgggtagga aacaaaatca       420
     aggagaatcg gtggctcaat ttctagcaga attaagacgc ttagcggcaa attgtaagtt       480
     tgataacgat ctcaacattc ggttaagaga tcagtttgta ttcggcttac gcagtgaagt       540
     agcacaaaaa cagctcttca cgaaaccaga tgaagttaca ctggaagacg tggtcgcatt       600
     agctacagcg caggagctct cagaacaaag tctgtcacta gtccgaggaa atacaaacgc       660
     tcaacaaaaa gaagaagtaa ataaagtaac aaagaatata ccaggtaaac aatcaaatat       720
     ttcaaaaaat aattcacagt ataaaggagg aggaaaacct acatataatc aaaagtataa       780
     gaaagaatgt caaagatgcg gttctacaga tcacaatggt ataaaaaatt gtcctcataa       840
     agaaacaaaa tgttatgcat gcggaaaatt tggtcactta tcttttaaat gtaggagtag       900
     cggacaaaaa cagtactatc cacagtcgaa gaaaccacag gctagtcaga gtaatatggt       960
     ggatattaga gcaacagaag ttttatcaac aaatcaaatg gagaaaaaga aaatttggat      1020
     aactttgaag atcaacggca ttcctcatca gatggagata gacacaggct gtgaaagaag      1080
     catggtttca aaagaatttt ggaaaaccct agggaaacct actttatcaa agtcaacgct      1140
     acaattcaag acgtacacaa atgaaatttt ccatgcaata ggtgagctaa attgtaaggt      1200
     aaagtacaac aatgaaacaa tcgaacatgt atttcctgtg acacatggtt catcactatt      1260
     tggaagagat ttattgcgta aaattaaaat agattgggca gatatagccg cacaatgtaa      1320
     caaaatccaa gaaaatttaa cgctagaagg cattcttaaa gagttttcag acatatttga      1380
     ggaaccaagg ggacgcataa aaaaatttaa agcaaaaata gttcttaagg atgatgcgac      1440
     acccaaattc atgaaatctc gccctattcc gtacgcaatc caggagaaag tagatcaaga      1500
     actagaccgt atggaaaagt ctggaataat tgaacgagta gatcacagtg agtgggcatc      1560
     acctttggtt gtagtaccaa agcctaatgg acgagtaaga atcacaggag actttaaaaa      1620
     tacagtgaat gcacaactcc atatcactca atatccaatt gccagaccag agcaaatttt      1680
     caatacagta ggtggcagtt ctatatactc aaaattggat ggcagcaacg catatcatca      1740
     aatggaagta gaagaggagt gcaagaaatg tttagtagta aacactcata gaggactgta      1800
     ccgttacaac gtccttccac aagggatatc atcgtcacct gctatctttc aagaattctc      1860
     agacaagatg ctacaaggta ttcagcgtac aggtacttat atcgatgaca cgatcctagg      1920
     tgacacaaat gaaagagaac atcttcaaaa tttgcggaag atttttaaaa ggatgcgtga      1980
     atgtaattat tatgtaacaa aggagaaatg tgaatttgga aaatcacacg tagaatttct      2040
     agggcatatt ctttcaaaaa gaggtatcca cacagatcca aataaagtgt cggcaatgga      2100
     gattatacaa cgtccacaaa atgtcacaga attaaaatca ttcttaggac tggtaaattt      2160
     ttataataag tttgttccta attttgcaga tatatgtgaa cctctctata gacttacacg      2220
     ggtaaacgaa aaatggaact ggacaagcaa atgtgaatca gctttcaatc gtgtaaaaag      2280
     cactctcgtt agcgccccga tgctaatgaa ttacaatcca gatcttccca ttggaatcag      2340
     ttgtgatgca tcatcaattg gaataggcag tgtactgttc catagaattc aagaaggagg      2400
     gaagacaatt gaaaagccaa tagcattcac atcacgagta ctctcagcag cggagaaaaa      2460
     ttactcacaa atagagaaag aaggacttgc cataattcac gctttgaaga aattttaccg      2520
     atatttgtgt ggtcgacaat ttattttggt aactgatcac aaaccactgg tacacatctt      2580
     caatccgaag acaacattac agccatatgc agcagcacga cttcatcgtt ggagtatata      2640
     catgtcacaa tttcaatacg acattgaata tagatcgaca catgaacatg gcaacgctga      2700
     catactatca cgctttccag acaaaaatac attaggagaa gaagaggaag caaaagaagt      2760
     aaatttaatc gcagaagaga acatggaaaa attgccaata acgtataagg aaatacgaat      2820
     tgctacagca agagacaagg tattatccaa ggttctatct ttcataaaca ataaatggcc      2880
     aggagcaata gaaaaagaag aggaggaact acagagttac ttcaagaaac gagaagaatt      2940
     aactactcat caaggaataa taatttgggg acttcgagta atcataccta aagtattaag      3000
     agaaaagtta ctcaagaatc tccacgaaac acatgcagga atagtgagga tgaaggcatt      3060
     agcaagacag ttcatatggt ggccaaatat ggacaaggag atagaagaat tagcaagaag      3120
     ttgtaccaat tgttgttcaa ataggcctga ccctccaagt gctcctttgc atccatggca      3180
     atttccagag aaaccttggc agaggcttca cattgattta gctggaccgt tacaaaacag      3240
     aatgttttta atcatcatgg acgcacatac gaaatggccg gaagtatatg atatgaaaac      3300
     agataccaca agtaaaaagg tgatagaaaa gctaagagac agttttgtga gattcggtat      3360
     tccggaacaa atagtgtcag ataatggcag acagtttata tcagctgagt ttcaaagatt      3420
     ttgcaagaac aacggaatta gacatacaac aagttctgta tatcaccctc gtactaacgg      3480
     agaggcagaa cgctttgtac agacattcaa aaaagcagta cataattcag aaggagattt      3540
     aacgtatcgg attcaacgat ttttatttaa ttatcgttgc acgccacatt cgacgacagg      3600
     agcatcgcca acggagttac ttataggacg aagacctaga agtttactgg acttaattaa      3660
     accagacgta ttcaaaacag tagcggctgc tcaagcaaga caagaaaaaa gttataatac      3720
     tcgcgtcaag aatcgaaaat ttgagaaagg agaagaagta tgggttcgta cattttcaag      3780
     aaataaagct aaatggtcgc taggaactat tattaaagct ttgggtccag tcacgtattt      3840
     ggttcgagtc ggagatcaac actacaagcg tcatgtagat cagatgtata atgccatgcc      3900
     gcttcaactt aattttgaga aagctccaga gaatgatgct ttgtcaagaa gacttataaa      3960
     aaaagagcca gattcagatt ctacatctcc agagggaaac gaagaagaaa gacctgaaac      4020
     agcagaggaa ggagcaggtt cttcagagtc agagcaatcg aattcacgag aacatccagg      4080
     acagaacaga aatgagaata ctccatcatg tggcagacct cagagaacaa ggaagccgcc      4140
     ggatcgtctc gagtacaagg ccaggggcac ccaaaaggaa tacggttcaa aataaggggg      4200
     gaggaaa                                                                4207
//
ID   Gypsy-7_SI-LTR repbase;    DNA;    INV; 202 BP.
XX
AC   AEAQ01015416;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SI_;
KW   Gypsy-7_SI-I; Gypsy-7_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-202
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01015416; Positions    4342    4141.
XX
SQ   Sequence 202 BP; 62 A; 45 C; 38 G; 57 T; 0 other;
     tgtggtatat cgagtcacgc ggtatgaact tacttgcata gacgttcacg cacgcgcagc        60
     agaactagcg aagccgcata cgacgcttag agtcacgtat attcataaag attcttctta       120
     tatattatca gcattaataa agactaatat gtgcttgtaa gactgctagt gtatatgcct       180
     taccttccac tcgaacacaa ca                                                202
//
ID   Gypsy-7_SiCu-I repbase;    DNA;    INV; 7238 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-7238
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4970-4970 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           903..2948
FT                 /product="Gypsy-7_SiCu-I_1p"
FT                 /translation="MASKFPTPSLDEVLEVNKKRNIYVRKLKSVENEILNT
FT                 KDPKTKAELVTLVSGIRYQLATWTSREAELLEHSGIDVIFGYHRTIAKTDQ
FT                 HPSFTSIAAQIVRQDTSPFDLSDPSFSSHRPSTSATSQDLLEFPIDPSSSP
FT                 DTTFVAHDLDTTILPNPSESTRPIRLSEYPTLPLEDPSTSIDLDTLSAQIS
FT                 SSLSIQNPISPDKSSPPVDTAPGTGFDKYVTSRKRPTKSQSFHFSTKPSSP
FT                 FPLYFPLNNPSVTLATTTATTSTTSHTSTTSSSTSSTTTTSSTGTKSFTTA
FT                 SSPKPSIMSTVIAYTPPSFGTIYNGSTSVEKFFQKYEAFADTFTWGDDIKL
FT                 GQLEFHLSGPAAKCFNTLRKTKAKADFTYPNVRDDLKKFFASKSSTQEYEK
FT                 QLRERKLTSHETMEQYFWDVVELVQKVNKTLDFEKLRDNVLKGLPSETARD
FT                 IWNAGPTDLDSLHTKILEQQKFESLMGKSRFSKNEDSINEMVNNLENLGFS
FT                 VEKKNNESEEVNAVNHRKKSRRSGRTRNNSFQSNSQNNQSQLQPHLQQQTN
FT                 FNRSYQAGRYNPPRPQWQVIRRPVIQSNFYPQYQRPQSQNFRPQNVRPPFP
FT                 RSQNNFRSNPRFRSQNRPPSRFPPRNNQFANHVENEEVYEEIPQDQINAEL
FT                 PSVQEEYEEVYDEYPPEFEYETQYVNYSENDYL"
FT   CDS           2906..7039
FT                 /product="Gypsy-7_SiCu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="IRNTVCQLFGKRLPVSLPKVESKFTNXPDRPFNNLLI
FT                 VKAKINNQFCNVLIDTGATCCLLPPSFAITSVRCNPQKITCISGNQKTDTK
FT                 SPSIIQFHPNSKSFKFTPFVMNSSRPIIGNNFLREYKAIINYPRKEIRIGD
FT                 TIIPFYLNSXELACLHFEQXSHKVRLPHDLKLPPQATNLVDVSFTKIGLFS
FT                 PSVKTMERYNIIIPELYVDQVGNIKIPVINLNGHTIRLNYNTCLGCIEDIE
FT                 EVHHTNYEINSFVHVLENTEKIQNPQIKFNINPSLPENEKSVLLRFLDEYL
FT                 DVFAKSENDTGLYNGPELVRLNTGDSPPIASPPYRKSHSERKIIAKHIQGL
FT                 LEKGIIKESTSDWASPVLLVSKPDGGVRLCIDYRKLNQVLKDDKFPMGRLD
FT                 DLFDSLYGTKYFSKLDIQSGFYNFQIHPEDTEKTAFITHDGLYEFNRVPFG
FT                 LRTSPAVFNRLMRKIFGKLIYEKCFIYVDDLLVFGKTFEDHLTALKDVFTK
FT                 LLINNIKLKPSKCSFGYNELKLLGHIVGQNGISVDPEKITAIRNLPTPKTP
FT                 TEVKSILGLASFYRRFIKNFSDISRPLSNLTKKTTKFVWTNSCQKAFDLLK
FT                 QRLSSAPLLTQFDDRLPVILYTDASNYGLGAILCQEQNKEEKVIAYASRLM
FT                 NPSEQNFATSEKECLALIFALDKWREYCYGRKIIAYTDHLALLSLIKTKNS
FT                 KNLRLARWVLAIQEADIEVRYMRGKSLLNADALSRIIPFEERNPKLDPYKL
FT                 TLPKEQSLNNLVAIDYRSHLVTSQKEDAYLTEIRKKLHIDPTDKSVRSFKI
FT                 VNGIVYYENPINHRLLICIPRSMVCEILYANHDHPMAGHLGIDKTYQKIKQ
FT                 KYYIPNLKDYVYKYVRDCLECAKRSSNNFKKIGMLHAGEIYQLFDKIYVDT
FT                 IGPLTETKKKNKHIIVCIDYFSKYVITKALKQVTAAHIAKFLMDNVFLMFG
FT                 CSREIVMDNAKVHHSKLMTELLMRINTRPIYITPYHHQANAVERVNRTLQE
FT                 SLSKYIDKNQTDWDVHLPSCTFALNTAVHGSTQHSPYEIVFGRQPNLPIDI
FT                 LFDSPSIPYLENSQKIRAEVRENLLHAQELYSSRYNKNRLDKEYPPNSKVM
FT                 IADLAPKPGLSRKLSPKFMGPYRIIKQVSPLHYKVKPMTPTIGKKPIMVHV
FT                 NRMKPFGTTRLVYPTTAANGLKTNDQTSMLLVDPDHALSDGFPVLSRQSVD
FT                 PADVYHHHGVGPRQLEGFPVLSKRRLLDHHPDVASLDHVVVPQQQTDQSPS
FT                 RSNQQQPEEAYSSDESEDMSQFTYHPTEKGKQQKKKKLQLQQQRSNVNSHG
FT                 TLNSSAMQRNNKDIHHPKKTKKTLKSKKPKKKAKPHPPSDPVFTTPVPVVT
FT                 TRYGRTIRRPLRFKT"
XX
SQ   Sequence 7238 BP; 2450 A; 1589 C; 1178 G; 2010 T; 11 other;
     ttctggcgaa cctgtgctta cagttttcgg ttttttcggt tacccgggat cggttttgtg        60
     cagtgacaaa atttcatctt gtgtcgttgc gtgccgtgct tagtgaaact tgtgtgtgat       120
     ccgtctcttg cgcgcatttt taccatcttt cggatcccat cacagttttg ttttgtgcgc       180
     acgttactac tgccgtgacc cccctagtgc cgaaattccg ttttctgtgt ctttggtcac       240
     aaggaagaaa gaggagaggc tgattcacgt tcttaacgct gattcccgga ccaacggact       300
     ccatcttttg ttcggttcga tacttttaat cacatttatt catactgagc acctcgttgt       360
     gtctgtctta accgacggcc atacgagtta agtgacagta tcagttcata cggttgtcgc       420
     agcagcctgt tgaacacttc tacgtgcata ttggtcgagt aacttcctgt cgaggagtgt       480
     gttctggtga tactagtttg gatgccctcc agtcgagtga ttactcccct gtctgagctc       540
     cttcgttgtg tctgtcccgg acatagcgat agaagttgct ccaatcatat cgtgtcgtag       600
     ttccccttag ggcgttgctc caagcgtctg tcgtagtacc cctttggagg cagctccaat       660
     cccwtgttgt agttccccgt cagggtgcag ctccaatcaa tccgtgttgt agttccccgc       720
     cagggcgcag ctccaatcaw accgctacca cgttgatacc ggtaactcgc gtgatgtgcg       780
     atgatcatac aaattaaaaa gaaacttaaa gactgtaact gagaattata ttctgaagac       840
     tcaccgctcc atgcacacat tactgcttaa ccctcacacc atgcatcttc ttactaattt       900
     tcatggcttc taaattccca actccatctc tagacgaagt actcgaagta aacaagaaaa       960
     gaaacatcta cgttagaaaa ttaaagtctg ttgaaaacga aatattaaat actaaagatc      1020
     ctaaaacgaa agctgaacta gttactctag ttagtggcat aagataccaa cttgctacat      1080
     ggacatctag agaagcagaa ttattagaac attctggaat tgacgttata tttggttatc      1140
     atagaacaat tgctaaaaca gatcaacatc catcgttcac atctattgca gctcaaattg      1200
     tacgacaaga tacctcacca tttgatcttt cagatccttc attttcatct catagacctt      1260
     ccacctctgc aacatctcaa gatttattag aatttcctat cgatccttct tcatcacctg      1320
     atactacctt cgtagctcac gatctagata caactatctt acctaatcct tccgaatcta      1380
     cccgtcctat tagattatct gaatatccta cccttccttt agaagatcct tctacctcca      1440
     tcgatcttga tactttatcc gctcaaatca gtagttctct atccatccag aatcctatct      1500
     cacctgataa aagttcacct cctgtagata ccgcacccgg tacaggattt gataaatacg      1560
     taacttctcg aaagagacca acaaaatctc aatctttcca tttctcaact aaaccttcta      1620
     gtccttttcc tttatatttt ccactcaata atccttctgt aacactggct accactactg      1680
     ctaccactag tactacatca catacttcta ctacttctag ttcaacctca tctactacta      1740
     ctacttcatc tactggtaca aaaagcttta caactgcatc tagtccaaaa ccttctatca      1800
     tgtcgactgt aatagcatat acacctccat ccttcggtac catttataat ggctcaacta      1860
     gtgtagagaa attctttcaa aaatatgaag catttgctga cacatttact tggggagatg      1920
     atatcaagct aggtcaatta gaattccatc tttcaggccc tgcagctaag tgctttaaca      1980
     cccttagaaa aacaaaagcc aaagctgact tcacataccc aaatgttagg gatgatctta      2040
     agaaattctt tgcttcaaaa agttcaactc aagaatatga gaaacaactg agagaaagaa      2100
     agttaacatc acatgagaca atggaacaat acttctggga tgtagtcgag ttagttcaaa      2160
     aagtcaataa gaccttagac tttgaaaagc taagagataa cgttctaaaa ggtttaccat      2220
     ctgagacagc acgagacatc tggaatgctg gtccaacaga tttagatagt ttgcatacga      2280
     aaatattgga acaacagaaa ttcgagtcac taatgggaaa aagcagattt agtaagaatg      2340
     aagactccat caacgaaatg gttaacaatc tggaaaactt aggtttttcc gtcgaaaaga      2400
     agaataacga atctgaggaa gttaatgcgg tcaatcatcg taagaaatcc agacgcagcg      2460
     gtcgaaccag aaataattca tttcaatcaa attcacaaaa taatcagtca cagttacagc      2520
     cacatcttca acaacaaacg aacttcaatc gatcctacca agctgggaga tacaatcctc      2580
     ctagacctca atggcaagtc attcgtagac ccgttattca gtcaaacttt tatccacaat      2640
     atcagagacc acaatctcaa aattttagac ctcaaaatgt tagacctccg tttccwagat      2700
     cacaaaataa cttcagatct aatccaaggt tccgatcaca aaatagacct ccatctagat      2760
     ttccaccaag aaacaaccaa ttcgctaatc atgttgaaaa tgaagaagtt tatgaagaaa      2820
     tmcctcaaga tcagatwaat gctgagttac catctgttca agaagaatac gaagaagtgt      2880
     atgacgaata tccwcctgaa tttgaatacg aaacacagta tgtcaactat tcggaaaacg      2940
     attacctgtg agtttaccca aggtcgaaag taaattcaca aatwctccag atcgaccatt      3000
     caataatttg ctaatagtca aagccaaaat taacaatcaa ttctgtaatg tcttaattga      3060
     cactggtgct acatgttgtc ttttaccacc atcatttgcc ataacatctg taagatgcaa      3120
     tcctcagaaa atcacttgca tctcaggcaa tcaaaagact gatacaaaat caccaagcat      3180
     aattcaattt catccaaatt cgaaatcctt caaattcact cctttcgtca tgaactcatc      3240
     taggccaatc attggtaata atttccttcg cgaatacaaa gctatcataa attatccaag      3300
     aaaagaaatt cgtattggag acactattat tccwttttac ctgaattcws aagaactggc      3360
     atgtttacac ttcgaacaaw cttctcataa agttaggcta cctcatgatc tcaagttacc      3420
     acctcaagca acaaacttgg ttgacgtttc atttaccaaa ataggtttat tctcaccatc      3480
     tgtgaagacc atggaaagat ataacatcat aattcctgag ttatatgtag atcaagtcgg      3540
     aaacattaag atccctgtca taaatctcaa tggtcatacc ataagactga attataatac      3600
     ttgtcttgga tgtattgaag atattgaaga agtgcatcat actaactacg aaatcaactc      3660
     ctttgtgcat gttttggaaa atacagaaaa aatacaaaat cctcaaatca aattcaacat      3720
     caatccttcg ctacccgaaa atgaaaaatc cgtcttgtta agattcttag acgaatatct      3780
     tgacgttttc gcaaaatctg aaaacgatac aggtttatac aatggacctg aacttgttag      3840
     actaaacact ggcgatagtc caccaatcgc ttcaccacct taccgaaaat ctcattcaga      3900
     aaggaagatc atagcaaagc acatacaagg tttattagaa aaaggcatca tcaaggaaag      3960
     tacttcagac tgggcttcac ccgttttatt agtttcaaag cctgatggcg gcgttagatt      4020
     atgcattgat tatcggaaat taaatcaagt tctaaaagac gataaatttc caatgggaag      4080
     acttgacgat ttattcgatt ccttatacgg aacaaaatat ttctcaaaat tagacattca      4140
     atctggtttc tataatttcc aaattcatcc tgaagatact gagaaaactg cattcatcac      4200
     acatgatggc ttgtatgaat ttaatagagt tcctttcgga ttaagaacaa gtccagccgt      4260
     gttcaatcgt ttaatgagaa aaatatttgg aaaattaatc tacgagaaat gctttatcta      4320
     cgtagacgac cttcttgtgt ttggaaaaac atttgaagat cacttgactg ctttgaaaga      4380
     cgtttttacg aaattactga ttaacaacat caaactgaaa ccatccaaat gtagtttcgg      4440
     ttacaacgaa ttaaaactac tcggacatat agtcggacaa aacggaataa gcgtagaccc      4500
     agagaaaatt actgccatac gaaatttacc tactccaaaa actcctacgg aagtaaaatc      4560
     aatattaggc cttgcatcct tctaccgaag attcattaaa aacttctcag acatttcacg      4620
     acctctatca aatctgacaa agaagactac aaaattcgtt tggacaaact catgtcaaaa      4680
     agcgtttgac ttactaaaac aacggttatc ctccgcaccg cttttgacac aatttgatga      4740
     cagactacca gtcatcttat acacggacgc ttcaaattat ggcttaggag caatcctctg      4800
     ccaagaacag aataaagaag agaaagtaat agcctatgcc tcgcgactaa tgaatccatc      4860
     tgaacagaat ttcgcgactt cagaaaaaga atgtttagcg ttaatcttcg cgttagacaa      4920
     gtggagagaa tattgctacg gaagaaaaat aatcgcgtat acagaccatc tcgcgttact      4980
     aagtctgata aaaacgaaga atagcaaaaa cttaagactg gcacgttggg tattagcaat      5040
     tcaagaagca gatatcgaag ttagatacat gcgcggaaaa tctttactaa acgctgacgc      5100
     tttaagtcga attattccat tcgaagaacg aaatccaaaa ttagatcctt acaaattaac      5160
     tttaccaaaa gaacaatctt tgaacaatct ggttgctatt gattatcggt cacatttggt      5220
     tacttctcaa aaagaagacg cgtatttaac agagataaga aagaaactac acattgatcc      5280
     tacagacaaa agtgtacgaa gcttcaaaat tgttaatggc attgtttatt atgaaaatcc      5340
     tataaatcac agattattga tctgtatccc cagatcaatg gtttgcgaaa tcctttatgc      5400
     caatcacgac catccgatgg caggacattt gggaatagat aagacttatc aaaagataaa      5460
     acaaaagtat tacattccta atcttaagga ttatgtctat aagtatgtaa gagattgttt      5520
     agaatgtgct aagagatcta gtaataattt taagaaaatc ggcatgttac acgccggaga      5580
     aatttatcaa ttatttgaca aaatttatgt tgatactatt ggccctttaa ctgaaactaa      5640
     aaagaaaaac aagcacataa tagtctgtat agattacttt agtaagtacg tcatcaccaa      5700
     agccctgaaa caagtgactg cggcccacat cgccaaattc ctcatggaca acgtgttcct      5760
     gatgttcggt tgcagccggg agatcgtcat ggacaatgct aaagtccatc atagtaagtt      5820
     gatgacagag ttactcatga gaattaacac tagacctatc tacatcacac cttaccacca      5880
     ccaagccaat gctgttgaac gagttaaccg cactctacaa gagtccttgt caaagtacat      5940
     tgacaaaaac caaacagact gggacgtcca tctgcctagt tgtacgtttg cactcaacac      6000
     tgctgtacat ggaagtacac aacacagccc gtacgagatt gtatttggga gacaaccaaa      6060
     tttgcctatc gacatcctat ttgactcacc atccatcccg tatcttgaaa acagtcagaa      6120
     aatacgagcc gaagtacgag aaaatctgtt acacgctcaa gaactatata gttctcgcta      6180
     caacaaaaat cgattggaca aagagtatcc accaaactct aaagtcatga tcgcagactt      6240
     agctccgaaa cctggtctta gtagaaagct ctcaccaaaa tttatgggtc cttaccgtat      6300
     aatcaaacaa gtgtcgccac tacattacaa agtcaaacca atgacaccaa caattggaaa      6360
     aaaaccaata atggttcatg tcaatcgtat gaaaccattc ggcacaacaa gattggtata      6420
     ccctactact gcagcgaatg ggctaaaaac taatgatcaa acatcaatgc tcctagtcga      6480
     tcctgatcat gcacttagtg atgggtttcc tgttctatca cgccagtcgg ttgatcctgc      6540
     tgatgtgtat catcatcatg gtgtaggacc acggcaactc gaagggtttc ctgttctttc      6600
     gaaacgtcgt ctgcttgacc accatcctga tgttgcgtcg ctcgatcacg ttgtagttcc      6660
     acaacaacaa acagatcaat caccatctcg atccaaccaa caacaacctg aagaagctta      6720
     tagctctgac gaatcagaag atatgagtca attcacctac catccaaccg agaaaggcaa      6780
     acaacaaaag aagaagaaac tccaactaca acaacaaagg tcgaacgtaa attctcatgg      6840
     tactttgaat tcttctgcta tgcaacgtaa caataaggac atccaccatc caaagaagac      6900
     caagaagacc ttaaagtcta aaaagccaaa gaagaaagct aaacctcatc caccatccga      6960
     tcctgtcttc acgacacctg ttcccgttgt tactacaaga tatggccgaa cgattcgaag      7020
     accacttaga tttaagactt agatttaagt tcaaaatttc aaatttccaa ttaaagtcat      7080
     tttcaaaaat ttttcaaaac tattagagat aagaatacaa aacataggtt aagatcaaaa      7140
     cacaattacc taggataaga agtcaattta caaatttaat ttaagaacac aaatattata      7200
     ttttaaaata acgtaccgtt ttctaacgaa agggagag                              7238
//
ID   Gypsy-7_SiCu-LTR repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-571
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5085-5085 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 571 BP; 177 A; 112 C; 80 G; 202 T; 0 other;
     tgtactgata cagccttctg ctgatcagtc aagcattgaa taaagaagta atattatttt        60
     cccacggtcc tcgcctggta taaaaactag tcttacgcta gtcatacgtt agtacctact       120
     tacataagaa ttatatagta caatttcatg atgcaatttc tattacgtaa atcatcagcc       180
     ataaaacacc gaatattctt cctggttatt taattagaaa tgaacaaata cttttcctgg       240
     attgaatcag aaaatattgt ataacttgtt ttccttattc tatgttttcc tgctcagtac       300
     tactaccatg ttaaactatt atatttcctt gtctaaaaat acctctaaaa cttaatatgg       360
     ataagtatag gataaattcg tatataaggg cgcttcacgc cattcagaac cgaatcagtt       420
     gtgaattgtg aatcttctcc tcctcttctc ctctacattg tgccaaagta aaagatctca       480
     ataaagtgct tgttattgtt actgtgtact tgtgaagaag atcttctgtt tcccgagtcg       540
     gatttattta ccatcacctt catacagtac a                                      571
//
ID   Gypsy-7_SiOr-I repbase;    DNA;    INV; 3758 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-3758
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 344-344 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..727
FT                 /product="Gypsy-7_SiOr-I_1p"
FT                 /translation="MSTSDTNDFQTDDQVVIARVGIKAPEFWRTEPELWFL
FT                 RLEAQFRQAKITSDDCKFDHTVTSLNSEVLLEVADILRNPTRGRAYEDLKT
FT                 RLLERYGSSADDKIHQLMEMTLGDLKPTQLLHRMQALASNNVSTQVLKKLW
FT                 LDRLPPQARGVIAILDGDLEELAKKADKYIQCSSFPIMAMDGKPALNNKVS
FT                 VDEKTDGHCYYHRRFGSQAKKCRAPCTFSKNDQEGAQ"
FT   CDS           685..3756
FT                 /product="Gypsy-7_SiOr-I_2p"
FT                 /translation="STMYLLKKRSRGGAVIMTTTAPHAPRRLFVTDKALKL
FT                 QFLVDTGADLSVLPRKACSASKPSMIRLYSATGSCIRTFGQKQLTLDLGFG
FT                 QPVTWTFVVADVTTAILGADFLVHHGFTVDMRNKRLVCPTIPSSITCVSRR
FT                 VSALEVGISTAHPYDRPTDAPDDPGRVQHYIDTQGPPVFSKPRRLPPDRLQ
FT                 AARAEFNQLIQMGIVQPSKSPWASPLHMVQKANGQWRACGDFRRLNAITKP
FT                 DRYPVPHIQDFANQLHGKKIFSTIDLVHAFHQIPVRPEDVQKTAVITPFGL
FT                 YEFLRMPFGLRNAAQTLQRYLDHLFRGCSFVYVYIDDILVVSETEAEHEQH
FT                 LAVVLQILEANGLQINKEKSKFRIREANFLGVTVSPTGVRPLPAKVSAIRS
FT                 FPQPTTYKQLRRFLGMVNFYRRWLPNAAKELMPLTELLSHQKKKQQDLNLT
FT                 PAASSAFTRVKELLATAAELVFPAPHAQLSMSVDASDTAIGGVLQQLVGEH
FT                 LQPISFFSRKLSKTERNYSTYDRELLAIFSGIHHFRYLLEGMPFIIYTDHK
FT                 PLTYAFQQRHDRQSPRQIRQLEFIGQFSTDIRHVQGEKNIVADCLSRPEVD
FT                 AITSPITIDFDRLAEAQTTDEGLQEALQDPTSSLNLQHIVIPDSERPLYCS
FT                 IQDGRVRVYVPATFQRDVFLKFHTQSHPGHAATLRMIAERFVWHNMNRQVK
FT                 QWSRECLQCQRAKVGRHTVTPVTPLGMPDERFAHIHIDIVGPLPPSDNFRY
FT                 LLTIIDRFTRWPEAIPIREITTEVVVQKLLEGWISRFGVPATITTDRGRQF
FT                 ESQLFRQLNTALGVQHIKTTAYHPQSNGCIERFHRTLKAALVAADVVSWAE
FT                 ALPLVMLSLRNTFKPDIACTASDLVFGAPVRLPGQLFVPSATPTDEHRFVQ
FT                 RLRETMGALRPVPTSNHSVRTAYVHPDLQTTTHVFIRNDKVKPPLTPPYSG
FT                 PYRVVERDDKFLTVDVQNVPQRVSMDRLKAAYVPASHQLAEEHSYANRLLL
FT                 NVCQQNRSQPVGSSLGGS"
XX
SQ   Sequence 3758 BP; 1027 A; 1033 C; 831 G; 867 T; 0 other;
     ttggtgaccc cgacgaacgt gtgagtgcaa caaattcaga tacgcaatgt ccacctccga        60
     cacgaacgac ttccaaaccg acgatcaagt cgttattgcc cgtgtaggga ttaaagcacc       120
     ggagttttgg cgcacagagc ccgaactatg gttcctacgc ctggaagccc aattcaggca       180
     agccaaaata acatctgatg actgcaagtt cgatcacacc gtaacaagtt taaacagcga       240
     ggtcctatta gaggtagccg acatactacg aaatccaact agaggtaggg cctacgaaga       300
     cctcaaaact agactgttag agagatatgg cagtagcgct gatgacaaaa ttcaccagct       360
     tatggagatg accttgggcg accttaaacc aacacagctt ctccaccgaa tgcaagcttt       420
     ggcctcaaat aacgtttcta cgcaggttct aaagaaactc tggttagacc gcctaccacc       480
     ccaagcccgg ggagtcatag caatcctgga tggagacctg gaggaattgg ccaagaaagc       540
     tgacaaatat atacaatgtt ctagttttcc tatcatggcc atggacggaa agcctgcgtt       600
     aaacaacaaa gtaagtgtgg acgagaaaac tgacgggcac tgctactatc acaggagatt       660
     tgggtcccaa gctaagaagt gtagagcacc atgtaccttc tcaaaaaacg atcaagaggg       720
     ggcgcagtaa tcatgacaac cactgccccc catgcaccac gtcgcctttt cgtcacagat       780
     aaagccctaa aactgcagtt cctcgttgac actggagccg acttaagtgt gctgccacgc       840
     aaagcatgtt ctgcttcaaa acctagtatg atacgcctat actctgctac tggttcctgt       900
     attagaacgt ttgggcagaa acagttgaca cttgaccttg gttttggcca gccagtcaca       960
     tggacctttg ttgttgcaga tgtcactact gccatcctag gtgctgactt cctcgtacac      1020
     catggtttca ccgtagatat gcgaaacaag cgccttgtgt gtccaactat accaagcagc      1080
     attacgtgtg tgtctcgacg agtaagcgcg ttggaggtgg gaatatctac tgcccatcct      1140
     tatgaccgac caacggatgc accagacgac cctggaagag tccagcacta tatcgacacc      1200
     caaggcccac cagtgttctc caagccgcgc aggcttccac cagaccgtct acaagctgca      1260
     cgggccgaat tcaatcaact tatacaaatg ggcattgttc agccatcaaa atcgccatgg      1320
     gctagcccgc ttcacatggt ccaaaaagcc aacggccagt ggcgtgcttg tggggatttc      1380
     cgtcggttaa atgcaattac caagcctgat cgctatccag tgccacatat tcaggacttt      1440
     gcaaatcagc tacatggaaa gaaaattttc tctaccattg atcttgtaca tgcattccac      1500
     cagatcccag tccgcccaga agatgtacaa aaaacggctg ttattacacc ttttggtttg      1560
     tacgaatttc tacgtatgcc ctttggctta cgtaacgccg cccagacact tcagcggtac      1620
     ctcgaccatc tcttccgagg gtgttcattt gtatatgtgt acatcgacga catactggta      1680
     gtctcggaga cggaagcaga acacgagcag cacttagcag tagttcttca gatcctagaa      1740
     gcaaatggac tccaaatcaa caaagaaaag tccaaattcc ggatacgaga ggcaaatttc      1800
     ttgggcgtca cagtctcccc aactggagtc aggcctctgc cagctaaagt cagtgctatt      1860
     cgcagttttc cgcaaccaac aacatacaaa cagctacgtc gcttcttagg gatggttaat      1920
     ttctatcgac gctggttacc gaatgctgca aaagagctta tgccactcac cgagctactt      1980
     tcccaccaaa agaaaaagca acaggacctc aacttgaccc cagcagcatc aagtgccttc      2040
     accagagtta aagaactcct agctactgct gccgagttgg tttttccagc accccatgct      2100
     cagttgagca tgtcagtcga cgcttcggac accgcgatcg gtggtgtatt gcaacagctt      2160
     gttggtgagc acttacagcc tatttctttc ttctcacgga agttgtcgaa gacggagcgt      2220
     aactacagta cctacgaccg cgagctgttg gcaatattta gcggtattca ccatttccgc      2280
     taccttcttg agggcatgcc attcatcata tacactgacc acaagccctt gacgtatgcc      2340
     tttcagcagc gacatgaccg tcaatctcca cgacagatcc gccagctgga atttattggt      2400
     caattttcca cagacatccg acatgtccaa ggagaaaaga acattgtagc cgactgtctc      2460
     tcacgacctg aggtagacgc aataacatca cccatcacca ttgactttga ccggttagct      2520
     gaagctcaga caactgatga aggtctacaa gaagctctgc aggaccccac aagctcttta      2580
     aaccttcaac acattgtcat accagatagc gaacgacccc tatactgttc aatccaagat      2640
     ggacgtgtac gtgtgtacgt gccggcgacc ttccagaggg atgttttctt gaagttccac      2700
     acccagtccc accctggaca cgctgctacg ctgagaatga tcgccgaacg cttcgtgtgg      2760
     cataatatga accgtcaagt caagcagtgg tccagagagt gtcttcaatg tcagcgggcc      2820
     aaagtaggac gtcatactgt tacaccggtg acaccactag gaatgcctga cgaacgattt      2880
     gcccacatac atatcgacat tgtgggacca cttccaccta gtgacaattt tcgataccta      2940
     ctcacgatca ttgatcgatt tacgagatgg cctgaggcta tccctattcg tgagataact      3000
     actgaagtag tggtacaaaa gctcctcgaa ggatggatat cccgctttgg tgtaccagcg      3060
     accattacta cagaccgagg cagacaattc gagagccagt tgttccgcca gcttaacaca      3120
     gcacttggag tacagcacat aaagacgact gcttatcacc cacaatcaaa tggatgtatc      3180
     gaacgctttc accgaaccct caaggctgca ctcgtcgctg ctgatgtcgt atcctgggcc      3240
     gaagctcttc ccctcgtcat gctgagccta cggaacacct tcaaaccgga catcgcctgt      3300
     acagcctccg atttagtgtt tggtgcacca gttcgcctcc ctggacagct atttgttcca      3360
     agtgctaccc caactgacga acaccgattt gttcaacgac tccgtgagac catgggagca      3420
     ttgaggcctg taccaacgag caaccactca gttcgcaccg cctatgtcca tcccgaccta      3480
     cagacgacta cacatgtctt catacgtaac gacaaggtga agcctccatt gacacctcca      3540
     tatagcggcc cgtacagagt tgtggaacga gatgacaagt tcctaacggt ggacgtccag      3600
     aatgttcccc aacgagtctc catggatcga ctgaaggcag catatgttcc agcatctcat      3660
     caactggcgg aggaacattc atacgccaac cgtttgctgc tcaacgtatg ccagcagaac      3720
     cgttcacaac cagtgggttc ctcactgggg gggagccc                              3758
//
ID   Gypsy-7_SiOr-LTR repbase;    DNA;    INV; 279 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-279
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 332-332 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 279 BP; 79 A; 56 C; 63 G; 81 T; 0 other;
     tgtggcagac ttccgaaggt agcaagtgcc cgccacagat tggttggttc cacgggagga        60
     gaataacaac cctgaatggc cgtccagctg atatctgtca atcgaggaag aggaaggatt       120
     attctgtgga tagacattcg accttcaaca ttcacgtttc gcgccaagaa accgaattct       180
     tatgtttttg taatagttat ttagtttgta acaattgatc gagttaatta aatgacttaa       240
     ttatttagtg tgcctaattt gctacccgca acggccaca                              279
//
ID   Gypsy-7_SpEx-I repbase;    DNA;    INV; 5223 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5223
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4066-4066 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           369..4772
FT                 /product="Gypsy-7_SpEx-I_1p"
FT                 /translation="MPNSHRRRGRSVSRESRHHRRDVRSRSRESRSRGRIS
FT                 RSRGRESHNSRLDLQGNRIPRQPDIASNSLLTQQMQQILDRLTSLEEDRRV
FT                 SRAASLRQPSNQQQQLVEETATTARDGAGFRDSAAPSSPGRSVSAAADRDA
FT                 TVTDRLIDAIRSINTTVRSNQAYFISNFDPSVNDIDTWCEEVDRAKVSNNW
FT                 TDNECLSRIGNCLKGDSKTWLNEWVTSDRTWSNFIREFKPLCPRKPDVANI
FT                 LYEVMSTNSDRYPTYADYARRSLLRLRIVKGLSDELISAIVIRGVMDPQIR
FT                 AAATNAKLMPNELVEYLSIYVKSNLNSKKYTNPSNNDRSFKSTLETSQRKR
FT                 KFEDGTCFLCGKYGHKSSNCHKRQAANSSNNSNGNVQRNYPVSSSSKTEPC
FT                 SFCKKPGHRVETCFAKQKSESNNAENVNFCRKNLDSGRNDIVVAVIQGIPV
FT                 DVLIDSGSSISLISSSLLKYFKCARKPAFRILRGIGSQDVESTYYVTLPIE
FT                 FDEITLEVDLHAVSPEFLNTPVIVGTDVLNRDGVTYVRTRDRQHLAYNNRS
FT                 PYNVMCAVTIHDTPIKTPLTGRDLERLLELINEFSKFFISGTAATTVNTGS
FT                 MSIKLNNHTPVNYRPYRLSLPEILKVRGIIQELLDNGIIRDSESEYASPIL
FT                 LVKKKDGSDRMCVDYRRLNGITVKDRFPLPLIDDHIDRLGKHKFFSSLDMA
FT                 TGFHQIPLDEESIPLTGFVTPEGHYEYLKMPYGLANAPVVYQRIISKTLRR
FT                 QLEAGKTLVYIDDVLILSHTIDEGLILLRDVLQTLTAAGFSINLKKCSFLS
FT                 TQIEYLGRTISQGQVRPSELKVQALVDAPTPKTVKQVRQLLGLASYFRRYI
FT                 SGFAARTAPITKLTRKGIPFLWGREQEEARQEIISQLTSEPVLAIYDPNLP
FT                 IEVHTDASSIGFGAVLLQVHENGCKQAVGYFSKRTQGAEPRYHSYELETLA
FT                 VVKALQHYRHYLVGVNFKVVTDCNALKSTQQKKDLLPRVARWWMYLQDFDF
FT                 TLEYRKGTSMSHADYLSRNPVNVCEVRRQQNWARIAQAADEETQQLIQRLT
FT                 DGQLDTTHYVHKNDLLFYKCSPVGEEPRYLCYVPKGHRLSLLRIFHDEHDH
FT                 IGADKTLELIRKHFWFPSLKSFVKKYISHCIICLTHKKIPRDPQQPIHSWE
FT                 KPCTPFEVIHTDTLGPLPQSNGYRYVLIIIDAFSKFCLLYPMFGQDANELK
FT                 RLFTNVISLFGTPKLIVADRGRMFQSSEFTKLVTELGIDLHLITPEMHHSN
FT                 GQVERYCRTLLNMIRIQCNHRQDEWADLMWRSQLVLNITKQKTTQLSPLNL
FT                 LVGIEAATPLIRHLVRDVALDSSHPNREAHREMHRQRASERLARNQRQQDE
FT                 TVNAGRKSPRSFECNSLVFVIKQAQSTGKLDSGMRGPYRVVKALPHGRYEL
FT                 QLLAGSYGKSTQAAAQFMKPWRGEWTPETCAAYFDGKTYDMLTSCLCHTFV
FT                 FFS"
XX
SQ   Sequence 5223 BP; 1465 A; 1139 C; 1155 G; 1464 T; 0 other;
     tcagaagtgg gatacgcctc gcgttccatt tcgttttgtt cgccttgaat caagacagtt        60
     taaaacttcg taacgtattt ttttttcttt ttcttaagtg ggtacatttc aacatttaaa       120
     ttaactgtta agcatttgta acgtccgcgt aattaataag gttcaagtgt aagtgtgtat       180
     tagtggtttt ggtgagtacg ttccagtttt tcttgatatt tagaaagcaa attcttttgt       240
     ttacgtatag ttgtagaatt ttacaatcat atgttttgat ttgttgctat tcatacaatt       300
     gctttgattt atttaaattt tctaccgatt ccttttattt gatttgaaac aagttagaaa       360
     gaaacaagat gcctaatagc catagaagaa gaggccgttc agtgagtcga gaatcgcgtc       420
     atcatcgtcg tgatgtgcgc tctaggagcc gtgaatctcg ctctcggggt cgcatctcac       480
     gttctagggg tcgtgaatcg cacaatagtc gacttgattt gcaagggaat agaattccta       540
     ggcaacctga tattgcttct aacagtctat taactcaaca aatgcaacaa attttagatc       600
     gattgacatc gcttgaggaa gaccggcgtg tgtcacgtgc agcatcgctg cgacaaccgt       660
     ccaaccagca gcagcagctc gtggaagaga ctgcgactac ggcacgagat ggagcaggtt       720
     ttcgtgactc ggcagctccg tcttcacctg gacgttccgt gagtgcagcc gccgatcgcg       780
     atgctaccgt gaccgatcgt ttgattgacg ccatacgatc catcaacact acggtaagat       840
     ccaaccaagc ttattttatt tctaatttcg atcctagtgt caatgatata gacacttggt       900
     gcgaggaggt agaccgcgcg aaggtttcaa ataattggac tgataatgaa tgcttgtccc       960
     gcattgggaa ttgcctcaaa ggagattcga agacgtggct caatgagtgg gtcactagtg      1020
     accgcacatg gagcaacttt ataagggaat tcaagccctt atgtcctagg aagccagatg      1080
     tagcgaatat cctatacgag gttatgagca caaactctga taggtaccca acatatgccg      1140
     attatgcccg tcgctcttta ttgagactcc gtatagtcaa gggcttaagt gatgaactca      1200
     tttctgcaat tgtgattcga ggcgtaatgg atcctcaaat ccgcgccgct gccacaaatg      1260
     caaagctaat gcctaacgaa ttagtagaat acctctccat ctacgttaaa tcgaacttaa      1320
     actcaaaaaa gtataccaac ccttctaata atgatcgttc ttttaaatct accctcgaaa      1380
     caagtcagcg taagcgaaaa ttcgaagatg gcacatgctt tttgtgtggg aaatatggtc      1440
     ataagtcttc gaattgtcac aaacgccagg ctgctaacag ttctaataat agcaatggaa      1500
     atgtacaaag aaattatcca gtctccagct caagtaaaac agagccatgt agtttttgca      1560
     aaaaacctgg tcatagggta gaaacgtgtt tcgctaaaca aaaatcagag tcgaataacg      1620
     cggaaaatgt taacttttgt cgtaagaatc ttgacagcgg gcgtaacgat attgttgtag      1680
     cggtcattca aggcatacct gtcgatgtcc tcatcgacag cgggtcgagc atatcactga      1740
     tttcatcttc gttactgaaa tattttaaat gcgcgcgcaa gcctgccttc agaattttaa      1800
     gaggtatcgg tagtcaagac gttgaatcta cttactatgt cacgttgccg atagaattcg      1860
     atgaaataac cttggaggta gacttgcatg cagtatcgcc agagtttcta aacacgcctg      1920
     ttattgttgg gactgatgtg ttaaatcgtg acggagtgac ctacgttcgt acacgtgatc      1980
     gacaacatct tgcttataat aataggtcgc catataacgt tatgtgcgct gtgacaatac      2040
     atgatacccc cattaagaca cctttgaccg gtcgcgacct agaaaggctg cttgagttga      2100
     tcaacgaatt ttcaaaattc tttatttccg ggactgctgc caccacagtc aatactggca      2160
     gcatgtctat caaattaaat aatcatacgc ctgttaatta tagaccatac agactttcgt      2220
     tgccggaaat tttgaaagtt cgtggaatta ttcaagaact cctagacaac ggtattatcc      2280
     gagattccga atctgaatat gcgagcccaa tcctcctagt aaagaaaaag gatggatcag      2340
     accgcatgtg cgtagattat cgcaggctta acgggattac tgtcaaagac cgttttcctt      2400
     tgccgttgat tgacgaccac attgaccggt tagggaaaca caaatttttt agcagccttg      2460
     atatggcaac agggttccat caaatcccat tggacgaaga gtcgattccg ctcacgggat      2520
     tcgtcacacc agaagggcat tatgagtatt taaaaatgcc ctatggtttg gcgaacgccc      2580
     ccgtcgttta tcagcgtatt atatcgaaaa cacttcgccg tcagcttgag gctggtaaga      2640
     cccttgtgta cattgacgat gtgctgattc ttagccatac gatagatgag ggccttattc      2700
     ttctccgcga cgtacttcag acactgactg cggcaggttt ttctatcaat ttaaagaaat      2760
     gctcattctt atcgactcaa attgaatatt taggccgcac tataagtcag ggtcaggtac      2820
     ggccgagtga gctaaaggtc caggcactcg ttgacgcccc cactccaaaa acggtcaagc      2880
     aagttcgtca gttgctaggt ttggcaagtt attttcgccg atatatatcg ggtttcgctg      2940
     ctagaacggc cccgattact aaactcacga gaaagggtat accgtttctt tggggaagag      3000
     aacaagaaga agcacgccaa gaaattatct cacaattaac cagtgagcct gtgttggcaa      3060
     tctacgaccc taacttgcct attgaagtcc atacggacgc aagttctatt ggttttggcg      3120
     ctgtgcttct tcaggttcat gagaacggat gcaagcaagc ggtaggttat tttagcaagc      3180
     gaacgcaggg tgccgagccc agatatcatt cgtacgagct cgagacgcta gccgttgtca      3240
     aggccctgca acactacaga cactacctgg tcggcgttaa ctttaaagta gtgaccgatt      3300
     gtaatgcact gaaatcaacg cagcaaaaga aagatctctt gccccgtgtt gccaggtggt      3360
     ggatgtacct acaggacttc gactttaccc tagagtatcg taagggtacg tctatgtcgc      3420
     acgcagacta cttgagccga aatcctgtta atgtttgcga agtacgcaga caacagaatt      3480
     gggctcgaat tgcgcaggcg gctgacgaag agacacaaca gcttatccaa agactgacag      3540
     acggacagct agacactact cattacgttc acaaaaatga cctgcttttt tataagtgtt      3600
     ctccagtggg agaagagccc aggtacttat gctatgtacc taaaggtcat aggcttagtc      3660
     tgcttaggat atttcatgat gaacatgatc atattggcgc tgataagact ttagagctta      3720
     ttagaaaaca tttttggttt ccttcactaa agtcatttgt caaaaaatac ataagccatt      3780
     gtatcatttg tttaacccat aaaaagattc ctagagaccc acagcagcca atacattctt      3840
     gggaaaaacc ctgcacccct tttgaagtaa ttcatacaga cacattaggt cctctacctc      3900
     aatcaaatgg ttatcgctat gtactcatta taatcgatgc tttttcaaaa ttttgtcttt      3960
     tgtatcctat gtttggtcaa gacgctaacg aactgaaacg actttttaca aatgtcattt      4020
     ctctatttgg tacaccaaaa ttaatagtag cagaccgagg cagaatgttc cagagctcag      4080
     agtttacaaa actcgtaact gagttgggca ttgatttgca tctgatcact ccggagatgc      4140
     atcattcaaa cgggcaggtg gagcgttact gtcgaacatt gttaaacatg attcgcatac      4200
     aatgcaatca tcgtcaagat gaatgggcag acttgatgtg gcgatctcag ctagttctta      4260
     acataacaaa gcagaaaacc actcagcttt caccattgaa cttgttggtt ggtattgaag      4320
     ctgctacgcc cctcatacgt cacctggtgc gcgacgtggc cttggatagt tcgcatccaa      4380
     atcgtgaagc gcatagagaa atgcacagac aacgagcttc ggagcgttta gctcggaacc      4440
     aacgtcaaca agacgagact gtgaacgctg gtcgaaaatc cccccgatca tttgaatgta      4500
     actcacttgt ttttgttatt aagcaggcgc aatcgactgg caagcttgac tccggcatgc      4560
     gcggacccta tcgcgtggtc aaagcgcttc cccatggtcg atacgagctg caactactgg      4620
     caggttccta tggcaaatcg acgcaagctg cggcccagtt tatgaagccg tggcgcgggg      4680
     agtggactcc agagacatgc gctgcatact ttgatggtaa gacgtatgat atgctaacgt      4740
     cgtgcctatg tcatacgttt gtattctttt catgatacgc taacgtcgtg cctatgtcat      4800
     gttattttag tgtgaaccat gataagctaa cgtcgtgcct atgtcatgtg ttcattttca      4860
     aatttgagaa acaagctaac gtcgtgccta tgtttctcgt taacaaagat agctaacgtc      4920
     gtgcttcctc tttgttggtt ttgtgaacta agctaacgta gtgcctatgg ttcactgtaa      4980
     attgtgtatg tgaattttat gatgaaaatc agtttcataa ctaatgtttt tttttccttg      5040
     tatgtttagg cgcagatagc aatgatgata atgcggagtc tacgcctgag caagctgcca      5100
     atgtcgatac gcaacccacc atcgatactt cgcctgaacc gatgcctagc acatccagag      5160
     ctgcagaagc cctgcagccc cagccgcagg agaacgggga cgtcctccag tcaggagagg      5220
     ccg                                                                    5223
//
ID   Gypsy-7_SpEx-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-330
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4136-4136 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4 or 5-bp TSDs.
XX
SQ   Sequence 330 BP; 80 A; 43 C; 77 G; 130 T; 0 other;
     tattggcgga agagtgacgt cttggctgtc atcggagggg atgttggtgg gagaagctac        60
     ggttgcctat aaaagggcct gcgcgctcag tggagtcctc tttctgcgtt gagtacacat       120
     ggtacaaggg aacctctgct cgtttgaagg gttaaactgt cttgtctgct attaattttg       180
     cgtgtcttta gtttagattg atctatgttt gtaatttcaa aattcgttat ttaattaaaa       240
     tttaaattgt tgtttattgt aattgtgtta ttaataaata agattgtgat ttgtattttt       300
     tttaatattt tcttcctgaa gttgccaaaa                                        330
//
ID   Gypsy-7_SpFr-I repbase;    DNA;    INV; 4112 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-4112
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1879-1879 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~83% identical to
CC   that of Gypsy-28_SpEx-I.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..932
FT                 /product="Gypsy-7_SpFr-I_1p"
FT                 /translation="MCESENMTKSDLTGSKDIFRVGVRVPPFWPEKPAIWF
FT                 AQIEGQFAISNITADTTKFFYVVSHLDPRYASEVEDIIVSPPADDKYGRLK
FT                 TELIKRLSESREKKVHQLLTHEELGDRKPSQFLRHLQHLAGPKVPDEFLRT
FT                 IWSSRLPSNIQSIIASQSSSPLEVLADLADKIHDVVPKGQVAAASSQVSDV
FT                 LTLTKQMTELVKQVEILTRKVNDLTRPGRSRSRSSSRHRSQSRSDVHPTCW
FT                 YHYKFGKKATKCNQPCNFESESENPKSSQ"
FT   CDS           896..4087
FT                 /product="Gypsy-7_SpFr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LRIGIGKPQKQSVMAADDCSTCKGRLFISDKRTGVQF
FT                 LIDTGSDVCAYPRTYLKNQLSYGKLSTYELVAANGTPIRTYGTYQLSLNLG
FT                 LRREFVWNFIIADVSRPIIGVDFLSYYNLLVDCRRQKLIDSITNLTVGAPA
FT                 THEITHEVLSLKTITGHSTLLDLLRQYPEITRPAGSYHQPIHNTKHYIRTT
FT                 PGPPVTSRPRRLAPDRLKIAKQEFEEMLRNGTARRSESPWSSPLHLVPKKD
FT                 DGWRPCGDYRRLNARTVPDRYPVRHIHDFAYQLSGSTIFSKIDLVKAFNQI
FT                 PVNEDDIKKTAITTPFGLFEFTAMTFGLRNAAQTFQRFLDEVLQGLDFTFG
FT                 YLDDILVFSKGEKEHIEHLTKIFEQLKKYGVVINTNKCVLGVSEVTFLGYH
FT                 VSAAGIRPLPEKVQAIHDYPLPKTAKELRRFLGMINFYRKFLPAAAQIQAP
FT                 LNQALSGPNIKGSTPITVTADIQKAFDACKRNLLEATLIAHPDPEAELALF
FT                 TDASDVAIGAVLQQRRQDSWQPLGFFSRKLSPAQTKYSTYDRELLAIHEGI
FT                 KYFRYMLEARTFKVFTDHKPITFAFTTSRDNCSPRQHRYFDFISQFTTDIN
FT                 HITGSDNVVADAFSRLESVDTTINYKQLQREQEHDQELQSLLKNNTALKLE
FT                 RVKTMDAYIYCDQSTSRPRPFITPTFRRQIFNNLHNLSHPGPNATAKLISE
FT                 RFVWPKIRRDCRTWAQQCTDCQRNKVTRHTHSPLSSFPVPSSRFSHVHLDI
FT                 IGPMPLSSGFRYCLTAVDRFTRWPEAYPLADVTAETCASTFIAGWVARFGC
FT                 PETITTDRGKQFDSQLFQSISSIIGAYHRPTTSYHPQCNGLVERMHRQLKA
FT                 AIMCHNNAQWSETLPLVLLGMRSAWKEDLQTSAAELVYGEPLRLPGEFLKP
FT                 ITHHSIDEADFAARLRQHISKLSPASTSCHGEKVFYVPKDLNTATHVFLRK
FT                 GPLKKSLESPYSGPHLVIERGPKTFKIDVQGKHITVTIDRLKPAYMTNNDD
FT                 GLSHKTSPSPQPPAASTPSPPPSSAPSPVPPQPQSQPETTTRSGRTVRFPR
FT                 HLSHYRP"
XX
SQ   Sequence 4112 BP; 1193 A; 1106 C; 855 G; 956 T; 2 other;
     ttggtgaccc cgaagactaa acacgtgctt gtgcttgtgc tacctacttt gtgcgcggtg        60
     aacttagact caaacgcagt aaacttagtg actatatcca agtgcaatac gtatcgtaaa       120
     agatgtgcga atcagagaac atgacaaaat ccgatttaac gggttcgaaa gacattttcc       180
     gtgtaggcgt gcgcgttccg ccattttggc ctgaaaaacc cgcgatttgg ttcgcgcaaa       240
     tagaaggcca attcgcaata tcgaacatta cggcggacac aacaaagttt ttctacgtcg       300
     tcagccacct cgatccaaga tatgcgtccg aggtggagga tatcatagtg agcccaccag       360
     cggacgataa atacggccga ctsaagacgg agttgattaa gcggctctcs gaatccaggg       420
     agaagaaggt gcaccaactc ctcacccatg aggaattagg cgatcggaag ccatcgcagt       480
     tcctcaggca cctacaacac ctcgccggtc ctaaggtacc cgacgagttt ctgcggacaa       540
     tttggtccag ccggctaccg agcaacatcc aatcaatcat agcatcccaa tcatcatcgc       600
     ctctggaagt tctcgctgat ctcgcggata agatccacga cgtcgtgccg aagggtcagg       660
     tcgcggccgc atcgtcccaa gtaagtgatg tcctcacctt aactaaacag atgacagaac       720
     tggtgaaaca agtagagatt ctaacacgaa aggtcaatga ccttacccgt ccaggacgat       780
     cgcgatcgcg ttcatcttcc cgccatcgat ctcaatcgag atccgacgtg caccctacgt       840
     gttggtacca ctacaaattc ggtaaaaagg ctactaagtg caaccagccg tgtaacttcg       900
     aatcggaatc ggaaaacccc aaaagcagtc agtaatggcg gctgacgact gctctacatg       960
     taaaggccgc ctatttattt cggataaacg taccggcgta caatttttaa tagatacggg      1020
     ttccgacgta tgtgcctacc caaggacgta tttaaaaaat cagctgtcgt acggtaaact      1080
     cagtacctac gagcttgtcg cggcaaatgg tactcccata cgtacctatg gtacctacca      1140
     actgtcactg aacctgggac tacgtcggga atttgtctgg aactttatta ttgctgatgt      1200
     gtcgaggcct ataatcggag tcgatttttt aagttattat aacttattag tcgactgccg      1260
     acggcaaaaa ttaatagact cgattacgaa tttaactgtt ggcgcgcctg caacccacga      1320
     gataacacat gaagtgctat cattaaaaac catcacaggg cattcaacct tactggacct      1380
     actacgtcaa tatccagaaa tcacacgtcc agctgggtct taccaccaac ccatacataa      1440
     tacaaagcac tacatccgta ctactcctgg cccaccggta acatcacgac cgcgtcgttt      1500
     agcacctgac cgtttgaaga tcgcaaaaca agaattcgag gaaatgttac gtaacggaac      1560
     ggctcgccgc tcggagagtc catggtcttc tccactacat cttgttccga aaaaagatga      1620
     tggttggagg ccgtgtggag actacaggcg gttaaacgcg cgaacggtgc cagatcgcta      1680
     cccggtaaga cacattcacg attttgctta ccaactatcc ggttccacta tattttcaaa      1740
     gattgatctc gttaaagcct ttaatcaaat cccagttaat gaagacgaca ttaagaagac      1800
     agcgataact acaccgttcg gtctttttga gtttacagcg atgaccttcg gcctaaggaa      1860
     cgcagctcag accttccagc gatttctaga tgaagttcta caaggtttag attttacgtt      1920
     tggatatctc gacgatattc tcgtattttc aaaaggggag aaagaacaca ttgaacactt      1980
     gacgaaaata ttcgaacaat taaagaaata tggagtagtc attaatacta acaaatgtgt      2040
     cctaggtgtt agtgaagtta ctttcttggg ttatcacgta tccgcagctg gcattcgacc      2100
     cctcccagaa aaagttcagg ctattcatga ctaccccctc cctaaaacag ctaaggagtt      2160
     aagaaggttc ctgggaatga taaatttcta tcgtaaattt ctacctgctg ctgcacaaat      2220
     tcaagccccc ctcaaccaag ctttaagtgg tcctaacatt aaagggtcaa cgcccattac      2280
     agtaacagct gatatacaaa aagcattcga cgcctgcaag aggaacctgc tggaagctac      2340
     gctcatcgca catccagacc cggaggccga gttagcactg tttactgacg catcagatgt      2400
     tgccatcgga gccgtcttac aacaacgaag acaggacagc tggcagccac ttggattctt      2460
     ctctcgcaag ttatctcctg ctcaaaccaa gtatagcact tacgatcgtg agttgctcgc      2520
     gatacacgaa ggaataaagt acttcaggta tatgctcgaa gcgagaacgt tcaaagtttt      2580
     caccgaccat aaacccatca cattcgcctt cacaacaagc cgagataact gctcaccccg      2640
     tcaacatcgc tacttcgact tcatatcaca gttcaccaca gatatcaacc atataactgg      2700
     aagtgacaac gtagttgccg acgcattttc acgtctagaa agcgtcgaca ctaccatcaa      2760
     ctacaaacag ctacaaagag aacaggaaca tgatcaagaa ttacagagct tactaaagaa      2820
     caacacagca ttaaagttag agagagtcaa aacgatggat gcctacatat actgcgacca      2880
     gtctacttct cgccctaggc cattcatcac accaactttt cgtaggcaaa tcttcaacaa      2940
     cctgcataat ctcagtcatc ctggtcccaa cgctacagca aaattgatct cagaaagatt      3000
     tgtgtggcct aagattcgtc gtgactgcag aacatgggct caacaatgca cagattgcca      3060
     acgtaacaaa gtcacccgtc atacccattc tcctctttcc tcatttcctg ttccttccag      3120
     ccgcttctcc cacgtccacc ttgacataat aggccctatg ccactatctt ctggtttcag      3180
     gtactgcctt acagccgtcg accgattcac ccgatggcct gaggcgtacc ctctcgctga      3240
     tgtcacagcg gagacctgcg ccagcacctt cattgctggc tgggtcgctc gttttgggtg      3300
     cccagaaacc atcaccacgg atcgaggcaa gcaatttgac tctcagctgt tccagagcat      3360
     ctcgtccatc ataggcgcct accatcgccc caccacatct taccacccac agtgcaacgg      3420
     gttagtcgag aggatgcaca gacagctgaa ggccgccatc atgtgccaca acaacgcaca      3480
     atggtcagag acgcttcctc tggttctcct tggcatgagg agtgcctgga aagaagacct      3540
     gcaaacctct gcagccgaac tggtatatgg cgagccactc cggttacctg gtgagttctt      3600
     aaaaccaata actcaccaca gcattgatga agcagacttc gcagcacggc tgagacagca      3660
     tatttctaag ctatcacctg catcaacttc atgtcatggc gagaaggtat tttatgttcc      3720
     caaagatctc aatacagcta ctcatgtctt cctgcggaaa ggacctttga agaagtcatt      3780
     ggaatcaccg tactctggtc cacacctagt cattgaaaga ggaccaaaaa ccttcaaaat      3840
     agacgtccaa gggaaacata taacagtaac cattgacagg cttaaaccag cttacatgac      3900
     aaacaatgat gatggcttgt cacacaaaac atcgccgtca ccacaaccac cagctgcttc      3960
     aacgccgtca ccaccaccgt catctgctcc atcgccagtt ccacctcaac cacagtcgca      4020
     gccagagacc accacaagga gcggaagaac tgtgagattt ccacgacacc tgtctcacta      4080
     tcgaccgtga accggtctca gcgggggagt ga                                    4112
//
ID   Gypsy-7_SpFr-LTR repbase;    DNA;    INV; 602 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-602
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1840-1840 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 602 BP; 187 A; 161 C; 85 G; 169 T; 0 other;
     tgtagggtat agctaaggta cattataata acaaacattt atacgcataa ataaacaaac        60
     ataaacatat catttacact catacataca taaatacata cataaataaa tataaacatt       120
     tacatacata caaatacaca aatacatata catacaaatc tacatactac atacattaca       180
     ttcacattct taccatacat actactttat aactttattt catctataca cggccttatg       240
     cctgcgcacg tatgtacacg cccttagcta tacctacaca ccgtccggcc gctagcggag       300
     ccctggcgcc cgcgttgaca acatgctcgg gacacttcgg gagttcgcgg agccgttcgg       360
     cacgcggcgc ggccgccgcc tccaccccgc gcttcactcg cgcccctcgc tcgcccacgt       420
     cagtgacgtc agtccgcctc ggctagcgat cgcgcgcgca tcgaaaactt actctcgcgt       480
     taactttata taatttcgtt gatctcacta ctaatactgt atattttatt atttattcaa       540
     tatagacaat ttaaagttag tgtctagtat tttatttatt ccaaatacta ataaacacta       600
     ca                                                                      602
//
ID   Gypsy-7_TCa-I repbase;    DNA;    INV; 4991 BP.
XX
AC   chrUn_33;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_TCa_;
KW   Gypsy-7_TCa-LTR; Gypsy-7_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4991
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_33; Positions   55619   60609.
XX
CC   Positions [1889-2395] - Reverse transcriptase
CC   Positions [3455-3931] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1499..4327
FT                 /product="Gypsy-7_TCa-I_1p"
FT                 /translation="MKFDCLLGRDFLTNDKLSISLGKVVTVKNKRSEVDIR
FT                 VQDESLELLHIDIGCNNKSEINLNINEQLSCDVHQQVKDIVNEFYVQPDRP
FT                 DEPYTQLELKLHVKPNHAPFYSKARRLSYAEKEAVKQITNVLLSKKVIKPS
FT                 SSQYSSPIVLVRKKDGNYRMAVDYRELNKLTTRDIYPIPHIEEQIDNLKGK
FT                 AYFTRLDLKDAFHNIKLDPESTKYTSFVTFMDQYEYTKMPFGLANGSSFFM
FT                 RFINTAFRDLLRQQKVQIYLDDILIPTKTMYENIAILKEVLKVLVKNKLEL
FT                 RFDKCEFLLDKVKYLWYNIDKNGISPSDDNVKAIKEFPTPKNFRELHSFIG
FT                 LLSYFRKFIRDFATVSKPLSELLKAKEFIWTDRENDCFESLKQKLISSPVL
FT                 AIYSHKLETELHCDASSHGFGAVLMQKQLEDGKFHPVFFFSKRTTPTEASY
FT                 HSFELEALAIIYSLERFRIYLQGIKFKIVTDCNSLKQTLERKEVNPRILRW
FT                 SLILRNYDYTLEHRTSDQMRHADALSREFSISLISENTFERNLELLQNLDS
FT                 KIVEIRKGLEKQQNKLYEMNNGLVYRKMGEKNLFYVLTSMEENIIRTCHEK
FT                 VGHQGINKTIDYITRIYWFPEMRNKVQNHILNCFKCITYSTVANRVEGKLH
FT                 CIDKGNVPFYTLHIDHYGPLEKSGNRHKYIFEIVDGFTKFVKFYATVSTNT
FT                 DEVIKHLKNYFAYYSKPKRIISDNDTAYTSNKFRVFMQENGIQHILTATRT
FT                 PQANGQIERVNRPLTAILSKFVSNHTSTWDKKLVDVEYAINNSVNRVTGET
FT                 PARLLFGIEQVRNDDDLRELIKEIQEQDRNLEEMRTKAVVGINAVNKYNQQ
FT                 YYDNKHKEPFKYKEGDYVMLKNVDTTAGVNKKLLPKFRGPYVISKVLDRDR
FT                 YVVKDPEGFQLTQLPYEGIASPANMKLWRLNNVDDNRLC"
XX
SQ   Sequence 4991 BP; 1777 A; 749 C; 1013 G; 1452 T; 0 other;
     cagacatcag aagtgggata agaacaagtg aacaagtgga gaagcttagt gatgtacccg        60
     gattgtacga aaaaatcaag aagtcgtccg ttgccgcaat tcgcgctttt cacaaacttt       120
     tgtacgatgg agtagatagt ggccgacgga ataggcagca cgtgcgtgat tttgcgggtt       180
     ttgtattcgc cgatgacgcc gcgttagatc aaaaggtaga atgggcaacc acaaatttaa       240
     cgttgggaga tttgacgtcc gtgtgcgcta ttttgaatat cgactacgag ggctcagcta       300
     gagaggtggc ggaccgcata tgcacgaaac tgagagatct aaactcgttg acatcgattg       360
     aagacacgga agaagaggaa gaagaagaag ctgacggaga ggacacgaat gatgacacac       420
     cgcgaaggac accatcacta gagaatgaaa gatgggccat acaacaaaca ccaaaattcg       480
     taatgaattt taaggatatc gaagattcga ttcgtccttt cagtggggaa gaatcatatc       540
     aagtggaaaa ctgggtacag gactacgaag agatggcaga agttatgcaa ttttcagaat       600
     tgcaaaaatt ggtatatgcg aaaaagtgcc taattgggtt ggcaaaacag tgtattcagt       660
     gtgaacgagg actgaacagc tggtccaagc taaaagaaat ccttcaagac gaatttggca       720
     agaagattag cagtgcagac attcatagac ttttatctga aaagaaaaaa caaagtaacg       780
     agtcggtatt agagtactat tttaacatga aggagattgc agccagaagc caaattgaag       840
     aagatgccgt aattcaatat attgtcgacg gaattccaga caaaatgtgt aataaaacgt       900
     ttttatatga agcaaggaac tttaggcagc tgaagactaa attagaaacg tacgagaaaa       960
     taaagagtcg accatcttca tcatcgatgg acaagcagcg tatcaataag aatgcagtaa      1020
     taaacgcgag tgtaacaaac aaatcaaaga gtgcgacaaa tgtgaccgct aataacattg      1080
     tgaggtgtta caattgtggt gaaaaggtca tattgcagca aagtgtagca aaccgaagag      1140
     agaagttggt tcgtgttttg gctgcggatc gaaaagtcat caaaaaaagg actgctcagt      1200
     taaacaagat acgacgagtc acctggtgga acaacaaatt ataccggctt ttatagtaaa      1260
     ggtgcgttca aacaattttg ttggtgagtt aacggcaata attgattcag gtagtccaat      1320
     ttcactgttg acttcccatt cgctaaaaac aaatgttaaa attttacctg ataattctaa      1380
     tataacatat tgtggtctga acggtactaa attgaatata ttagggcaaa ttaacgaaag      1440
     agttttagtt aatgattgtg agactgaaat tgaattcaaa gtagtacctg ccgacactat      1500
     gaaatttgat tgcttactag gtcgagattt cttaacgaat gataaattaa gtataagttt      1560
     aggtaaggtt gtaactgtga aaaacaaacg aagtgaagtg gacatcagag ttcaagatga      1620
     atctcttgaa ttattgcaca ttgatattgg ttgtaacaat aaatcagaaa taaatttaaa      1680
     tattaacgaa caattgagct gtgatgtcca tcagcaggta aaagatattg taaatgaatt      1740
     ttatgtacaa ccagatagac ccgatgaacc ttatacgcaa ttagagttga agttacatgt      1800
     aaagcccaat catgcgccat tttattcgaa agccagacga ttatcttacg cggaaaaaga      1860
     agcggtaaaa caaattacaa acgtattatt gtccaaaaag gttatcaaac caagtagttc      1920
     acaatatagt agtcccattg ttttagtgcg aaaaaaagac ggaaattatc gtatggccgt      1980
     tgattaccgc gagttaaata agttgacaac gcgagatatt tatcccattc cgcacataga      2040
     ggagcaaatt gataatttaa agggtaaggc ttattttacg cgtttggact taaaagatgc      2100
     ctttcataat attaaattag atcccgaatc aacgaaatat acgtcatttg ttactttcat      2160
     ggatcaatat gaatatacca aaatgccgtt tggtctagcg aatggtagtt cattttttat      2220
     gcgttttata aataccgcgt tcagagattt attacgtcaa cagaaagttc aaatttactt      2280
     agacgatata ttaattccca ccaaaaccat gtacgaaaat attgctattt taaaagaagt      2340
     tttaaaagta ctcgtaaaaa acaaattaga gctaagattt gacaaatgcg aatttttatt      2400
     ggataaagta aaatatcttt ggtacaatat agacaagaac ggtataagtc caagtgacga      2460
     caatgtaaaa gcaataaagg aatttccgac ccccaaaaat tttagagagc tccatagctt      2520
     tattggttta ttgtcctatt ttagaaagtt tattagggat tttgcgaccg tgtcaaagcc      2580
     gttgtcggaa ctattaaagg caaaagaatt tatatggacg gaccgtgaga acgattgctt      2640
     tgaatcatta aagcaaaaat taatatcgtc acccgtgtta gccatatact cgcataaatt      2700
     agaaacggaa ctacattgcg atgctagttc acatggtttt ggtgcagttt tgatgcaaaa      2760
     acaattggaa gacggaaaat ttcatccggt cttttttttt agcaaaagaa caacacctac      2820
     ggaagcgtct taccatagtt tcgaattaga agcgttagcg attatttatt cattagaaag      2880
     attccggatt tacctgcaag gtataaaatt taaaattgtc acggattgta acagcttaaa      2940
     acagacatta gaaagaaaag aagtgaatcc aagaattttg cgatggtcat tgattttacg      3000
     aaattacgat tatacacttg agcaccgtac ttctgatcaa atgagacatg ctgacgcgtt      3060
     aagtcgtgaa tttagtattt ctttaatttc agaaaataca ttcgagcgca atttagagtt      3120
     actacaaaat ttagactcaa aaatcgtgga aatcaggaaa ggtttagaaa aacaacaaaa      3180
     caaattgtat gaaatgaata acgggttagt gtatcggaaa atgggcgaaa aaaatttatt      3240
     ttatgtactg acatcaatgg aagaaaatat aattagaacc tgccacgaaa aagtcggaca      3300
     tcagggcata aacaaaacga ttgactatat cacacgtatt tattggtttc cggaaatgag      3360
     aaacaaagtc caaaatcaca tcttgaactg ttttaaatgc atcacatatt ccactgtcgc      3420
     aaatcgagtc gaaggtaaat tacattgtat tgataaaggt aacgtaccat tttatacact      3480
     tcacattgac cattacgggc cattagaaaa atcgggcaat cgtcataaat acatttttga      3540
     gatcgtagat ggttttacca aatttgtcaa attttacgcg actgtctcaa caaataccga      3600
     tgaagttatc aaacatttaa aaaattattt tgcttattat agtaaaccca agcgaattat      3660
     ttcagataat gacacagcgt acacgtcaaa taaatttcgc gtatttatgc aagaaaatgg      3720
     tatacaacac atcttaactg caacgagaac gccgcaggca aacggtcaaa ttgagcgggt      3780
     taatagacca ttaactgcta ttttatcaaa atttgtctca aatcatacgt ccacgtggga      3840
     caaaaaatta gttgacgtcg agtatgctat aaacaattca gtaaatcggg taaccggcga      3900
     aacacctgcg agattattgt tcggtattga acaagtacga aatgatgatg atttgcgtga      3960
     gctaataaaa gaaattcaag aacaagatcg aaatttggaa gaaatgcgta caaaagcggt      4020
     ggtaggaatc aatgcggtca ataaatataa tcaacaatat tatgacaata aacataaaga      4080
     accgtttaaa tataaagaag gcgattatgt tatgttaaaa aatgtagata cgacagcggg      4140
     tgtaaacaaa aagttgctac caaaatttag aggcccctat gtaatttcaa aagttttaga      4200
     tcgagaccga tacgtcgtga aagatcccga agggtttcaa ctaacgcagt tgccatatga      4260
     aggcattgca tcaccagcga acatgaaatt atggcgccta aataatgttg atgataacag      4320
     attatgttaa tttatttttg cagttcacta aagtaaattt tatttaagtt gagtgcatta      4380
     attaggtaga atttattgta taaattgtgt atgaatgttt aaaataatag gtgaatccta      4440
     agttagtgaa atatgtatga gatttgtttc cataagttat ttgcaatatt aggtgaaaat      4500
     tagtgttgtg attagatgag atttgttctc atattatttg attgtttgag atttgttctc      4560
     atgtgggtag ggatttgttc ctaatgaata gtttgagatt tgtcctcagt ggtagaaatt      4620
     tgttctcata ttgaagttgt ttatttgaaa ttttatttca cagttagtaa atgatttgtt      4680
     ctcatgttta aaaaatttcg agatttgttc tcacgtgtga ctaattattg tattttgaga      4740
     tttgttctca gtttgttaga gatttgttct aggatttaat tagatgtcta tgttaggtta      4800
     cttttaggat ttgttccaaa aatttcgaga tttgttctag gatttaatta gtttagtaat      4860
     tatttagagc ttgagggcaa gctggaaatg tcaggatgga cgagctgtag tgtatttaaa      4920
     aaactacctg ctctgtttgg gtccttgaga gaccagacct ttccctcagg ttctccaacc      4980
     ctcgacagaa g                                                           4991
//
ID   Gypsy-7_TCa-LTR repbase;    DNA;    INV; 137 BP.
XX
AC   chrUn_33;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_TCa_;
KW   Gypsy-7_TCa-I; Gypsy-7_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-137
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_33; Positions   55482   55618.
XX
SQ   Sequence 137 BP; 38 A; 32 C; 23 G; 44 T; 0 other;
     tggtacgaac gtcgtcgcat atagacgtac ctactccggg cagagcgata agtttctcct        60
     caaattgttc actttttatt tattcattaa actattaaaa gtacctatgt gtcttattgg       120
     ataagcaccc gccacca                                                      137
//
ID   Gypsy-7_TrNi-I repbase;    DNA;    INV; 5575 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5575
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 212-212 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           123..4778
FT                 /product="Gypsy-7_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDEMSGNRKRNKRKRRRNQSRNSRSSSTHEQRPRSDE
FT                 DSLKSHERPTNRRHRNRSRSRDQYRSRSSSYEHRRRRRSRDRYRKRSRRGR
FT                 SKRSKSSIERETPPPSGHVSYPNVLNSDTQAIFATLVEALTNSRPQGNKFP
FT                 MLGNVIPDFDPMVKSQTILMWINKVDECAKLYGWGDDQIIHYALPKLTGVA
FT                 KTWYQALPSMSYSWSEWKVKLEESFPSSEDYAELLTEMLSKRVKFNDSLEH
FT                 YYYEKINLLNRCEVHGKRAVDCILYGIEDRSLRLGAKAAKCQEPEQVLKYF
FT                 QSIKQQPREPDRSKVNYDKRNNTTSSLPVNSFRQTVNNGETKTTRSQNKMS
FT                 IVCFNCNEPGHFSSQCTKKILKCTVCNRLGHLSINCPRLPSDSTNKNDIPK
FT                 DKDVMRIETHILNDSKYLMYLKLNGELVQGYVDLGSQCTLIRHSEATRRGI
FT                 TWTDSNLPTMRGIGNNIVIPLGVSNVNIEIQDIVEEVDAYIVDDSVIKYSV
FT                 LIGHSFTEKPGIVITKTTDSLIFARDHPLKLQLSLTTDITIPPKELFPLPC
FT                 FSGNKYSGAVRVNGSLRGMPQKEYYLMPGEYEIENGEGRILVQNFSDSIVS
FT                 LKRDTLVTRALCVGDYLSVNSIDLENSDTSLTFNYGKQLNEDEVNRLKELL
FT                 KRYEMCFSDNLKDLGFTSLVQMEIDLHDLRPVVYRPYRLSLPERRQVQSMV
FT                 NEMIDADIVCESNSPYASPVLLVKKKTGESRLCVDYRALNNKTKKEHYPLP
FT                 IIDDQLDRLSGNSLFVTLDLASGYYQIPVEAKSQDKTAFVTPDGQYQFKRM
FT                 PFGLANAPSVFQRTMNKILSKVSYTIIYMDDVLIPSESFDQGMSRLEEVLQ
FT                 LLKDAGLTLKFKKCNFFYTELEFLGFHVSGEGIRPGTRKTLAIKHFPTPRN
FT                 VHDVRRFVGLASFFRRFVKDFALIARPLTDLLKSKFQWKWTTEEAESFRIL
FT                 KAKLIERPILTLYDPSLETELHTDASKLGVAGILLQRGTDGLLRAVAYYSR
FT                 KTTADEQKFHSFELETLAVVASLNRFRIYLLGLKFKIVTDCNALRTTLTKR
FT                 DLIPRISRWWIQFQEYDCEIEYRPGSRMAHVDALSRGPVSEPTDMDTENVF
FT                 DVLHVDLRDWIATVQGDDSEIKRIRDILEDDKTKFVADVRKNYQLKGNYVY
FT                 KVLDEGLRWVVPRGCRWQVLRMNHDDVGHFGFEKTLNRLRSTFWFPKMRRF
FT                 TKKYVSACLECAHHKAPGGPKEGMLHPIPKLEKPFHTLHADHLGPFIRSKR
FT                 GNMYLLVIIDAFTKFINIRAVRDTKATTAIKAFKEHFSYFGVPSRVITDRG
FT                 SCFTSAKFKNFINKLNIKHILNAVATPRANGQVERFNRTIIDALSAKCHGR
FT                 NDNLWDDCIGDIQLGINTTINKTTGKSPSELLFGCKLMNASENVLTDVIAE
FT                 ATERVDGDALIELRSNAKEKIEKQQEYAKNQFDRRRKRPTKYSVGDLVRIE
FT                 RTVIDKDHVGKSHKLLPKFQGPYRIIKILPNDRFLVEDTPLTRKGKKRYEN
FT                 VVALDKIYPWMNFNGYSSESTYNDQSEDTEIDTDRE"
XX
SQ   Sequence 5575 BP; 1808 A; 999 C; 1221 G; 1547 T; 0 other;
     tctcagaagt gggataagcc aagtacgccc acgattttaa agaaatttca ataaaaacaa        60
     taaccttata accacgtgtt gttgttgtgc acggaagttg gagcatatca atcgaatagt       120
     aaatggatga aatgagcggc aatcgtaagc gcaataagcg taaacgtcga cgcaaccaaa       180
     gcagaaattc aagatcaagc agtactcatg agcagaggcc gcgatcggat gaagattcct       240
     tgaaatcgca cgagcggcct acgaatcgcc gtcaccgaaa tcggagtcgc agtcgggacc       300
     agtatcgcag tcggagcagc agctatgagc acaggcgacg tcgtcgcagc cgagaccggt       360
     ataggaaacg cagcaggcga ggtcgcagca aacgctcgaa atccagcatc gaacgagaaa       420
     caccgccacc gtctggacac gtgagttacc ccaatgttct taatagtgac acacaagcga       480
     tatttgccac gttggtggaa gctttaacta atagtcgacc tcagggtaat aaatttccca       540
     tgttaggtaa tgtgattcca gactttgacc ctatggttaa gagtcagact atacttatgt       600
     ggatcaataa agtggatgag tgtgcaaagc tttacggttg gggtgatgac cagataatac       660
     actacgcctt gccaaaattg acaggggttg caaaaacctg gtatcaggct ctcccatcta       720
     tgtcttactc atggtctgag tggaaggtca aactggagga atcattcccg agcagtgaag       780
     actatgctga attactcacc gagatgttgt caaaacgtgt taaatttaat gattctttag       840
     aacattatta ctatgaaaaa attaatttac taaatcgatg cgaagttcac ggtaaacgtg       900
     cggttgattg tatattatac gggattgagg atcgatcgtt aagattaggt gcgaaagcag       960
     caaagtgtca ggaaccggag caagtcctta aatattttca atcaattaag cagcagcctc      1020
     gcgaacctga caggtcaaag gttaattatg acaaacgcaa taacactacc tcgtctttac      1080
     ccgtcaatag ttttaggcag acggtaaata atggcgaaac taagaccaca agatcacaga      1140
     ataaaatgtc gattgtatgc tttaactgca atgaacccgg gcacttcagt tcgcaatgta      1200
     ctaaaaagat attaaagtgt actgtttgta acagattagg tcatctgtct attaactgtc      1260
     ccagactccc atccgactca accaataaga acgatatacc taaggataaa gatgtcatgc      1320
     gtatcgaaac acatattttg aatgatagta aatacctaat gtatttgaaa cttaatgggg      1380
     aacttgttca aggttacgta gatttgggta gccaatgtac gctgattcgt catagtgagg      1440
     ccactaggag aggaattacg tggactgata gcaacttgcc aactatgagg ggaataggca      1500
     ataatatagt gataccattg ggcgtctcga acgtcaatat tgaaattcaa gatattgtag      1560
     aagaagtcga cgcgtacatt gttgatgata gcgtaatcaa atattctgtt ttaattggac      1620
     acagtttcac tgagaaaccg ggtatagtta taacaaaaac tacagattca ttgatatttg      1680
     ctcgtgatca tcccttaaaa ttacaattaa gtttgacaac cgatattacg atacccccta      1740
     aagaattatt tccgttacca tgcttctctg gaaacaaata ttcgggcgcg gtccgtgtta      1800
     atggttccct acgtggtatg ccgcaaaagg aatattattt gatgccaggt gaatatgaaa      1860
     tagaaaacgg agaaggtaga atactggtac agaactttag tgatagtata gttagtctaa      1920
     agagagatac gcttgttacg cgagctctct gtgtcggcga ctatttaagc gtaaattcaa      1980
     tagacttaga aaattctgac actagtttga cttttaatta tggtaaacaa cttaacgaag      2040
     acgaagttaa cagacttaaa gagttgctca aaagatatga gatgtgcttt tcggataact      2100
     taaaagactt aggatttact agtttagttc aaatggaaat tgatttacat gatttgcgac      2160
     cagtagttta tcgcccgtat agactgtccc ttccggagcg tagacaagtc cagtccatgg      2220
     tcaacgaaat gattgatgcg gacatagtat gcgagtcaaa ctcaccttat gctagcccag      2280
     tcttactagt taagaaaaag actggtgaaa gcagactatg tgtcgattat cgcgccttaa      2340
     ataataaaac caaaaaggaa cactacccat tacccataat tgacgaccaa ctcgacagat      2400
     tatctggaaa ttccttgttc gtgaccctgg acctcgcatc aggctactac cagattcctg      2460
     tagaggctaa gtctcaagac aagactgcgt ttgtgactcc agatgggcag tatcaattta      2520
     aacgcatgcc atttggatta gcaaacgccc cttctgtctt tcaacgaacc atgaataaaa      2580
     tactgtcaaa ggtcagctac acgattattt acatggatga cgtactcatt ccttcagaat      2640
     cgtttgatca gggtatgagc cgtttagagg aggtacttca acttttaaaa gacgctggac      2700
     ttaccctaaa gttcaaaaaa tgtaacttct tttacactga gctagaattt ctaggctttc      2760
     atgtaagtgg cgaggggata cgcccaggga cacgtaaaac gttagctata aaacattttc      2820
     ccactccgcg aaacgttcat gatgtcagac ggtttgtcgg ccttgctagc ttctttcgga      2880
     ggttcgtaaa agactttgcc cttatcgctc gcccgttgac ggacctctta aagtctaaat      2940
     tccaatggaa atggaccact gaggaggcag agtcgttcag gattttgaag gcaaaattaa      3000
     ttgaacgtcc tatattgact ttatatgacc ctagtttaga aaccgaactg catacggacg      3060
     cctcaaagct aggcgttgca gggattctct tgcagcgggg tacagacggg ttacttagag      3120
     cagtggcgta ttacagtcgt aagacaacag cagatgagca aaagttccat tccttcgaat      3180
     tggaaacctt ggcagttgtc gcatctctaa atcgttttcg aatctattta ctggggctaa      3240
     aatttaaaat agtcaccgac tgtaatgctc ttcgtaccac tttaacaaag agggacctta      3300
     taccgcgaat ttctcgctgg tggattcagt ttcaagaata cgattgcgaa attgagtaca      3360
     gacccggttc gcgtatggct cacgtagatg ccctcagccg tggacctgtt agtgagccta      3420
     ctgatatgga cactgaaaac gtttttgatg ttttacacgt agatttacga gactggatcg      3480
     ctactgtaca aggtgatgat agtgagataa aacgtataag agatatttta gaagatgaca      3540
     aaaccaaatt tgtagctgac gtgcgtaaga attatcagtt gaaaggtaac tacgtgtaca      3600
     aagttttaga cgaaggattg agatgggtag ttccgagggg ttgtaggtgg caggtgctgc      3660
     gcatgaatca cgacgatgtg gggcattttg gtttcgaaaa aactttaaat cgtttaagaa      3720
     gcacattttg gtttccaaaa atgcgtagat tcactaagaa atacgtttcc gcttgcctgg      3780
     agtgtgcgca tcacaaagca cctggtggtc ccaaggaagg aatgcttcac cccataccga      3840
     agttggagaa gccattccat acactacacg cagatcatct gggcccgttt attcgctcaa      3900
     agagaggcaa catgtatttg cttgttatta tagatgcatt tactaaattt attaatatac      3960
     gtgcggtaag ggatactaaa gcaacaacgg caatcaaggc atttaaggaa cattttagtt      4020
     atttcggcgt tccttcgcgc gtcataacgg accgcggttc ttgtttcacg agtgcaaaat      4080
     ttaaaaattt tattaataaa ttaaatataa agcacatctt gaatgcagtg gctactccaa      4140
     gggcgaatgg acaggtcgag aggtttaatc ggaccatcat cgatgccttg agtgcaaaat      4200
     gtcatggtag aaacgacaat ttatgggacg attgcatagg agacattcaa ttaggcatta      4260
     atactactat taataagacg acgggaaaaa gtccgtcgga gctattgttc ggttgtaaac      4320
     tgatgaatgc atctgaaaat gtattgacgg atgtaatcgc cgaagccacg gaacgagtag      4380
     acggtgatgc attaatagaa ttaagatcga atgcaaagga aaagatagaa aaacagcagg      4440
     aatacgccaa aaatcagttt gatagacgtc ggaaacgtcc aacaaagtat agtgtaggtg      4500
     atttggttag gatagaaaga accgtgatag acaaagatca tgtaggaaaa tcacataaac      4560
     tcctccccaa attccaaggc ccctatcgaa ttattaaaat attacctaat gacagatttc      4620
     ttgtcgaaga cactcccttg acaagaaaag gtaaaaagag atacgagaat gtcgttgcat      4680
     tagataaaat ttatccatgg atgaacttta acgggtatag cagtgaaagc acttacaatg      4740
     atcagagtga agatacagaa atagacacag atagagaatg atgcaacttg aatagactat      4800
     aaaatgtgaa attgataata ttatttaata cggtcgaata tgatatacat tatatatcgt      4860
     atttaatgca ttggtcgacg aaaattggtc gagtgtgtgt cattattagg gatgtcggtg      4920
     gcattcctta aaaatcgtat atgagcaatt agtgcagata atgaatggca tgagaaatga      4980
     tgtcgcacag ttgattgcaa gatagtgagt aagatccttt gactcgagca caatttgtca      5040
     tgaacggtca gtgcagatat tgaatggtac caagataacg gtgccgcaca gatgactgta      5100
     gatcttgaca gattgtgcaa gaatgagatt gtagagctgt tcatgtgaat tgaatttgtg      5160
     attacagatt tacatagaat tacaggtaat gagaaatttg agttgcgatg agaaattgtg      5220
     atagacatag acgctgatta gataaataaa aatcctactg atgaattatt gaagaattaa      5280
     ctagttttaa gtataaagta attattagca agcacagact gtgttaatac caaatatctc      5340
     aaataattaa agaatttata aaaggagtta gcccataata ttttgctacc attgtgaatc      5400
     tatttttgtt ttatatttca tttattgttg tttatttaat gatcaatttt atttattgtt      5460
     agtagatata cacctgttcc ttttttttta cttttttatt atgaattgtt tattaatgat      5520
     tttatttatt tacaccggag aagtgagagg actcacttaa gcaggatggc cgagt           5575
//
ID   Gypsy-7_TrNi-LTR repbase;    DNA;    INV; 309 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-309
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 252-252 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 309 BP; 106 A; 44 C; 53 G; 106 T; 0 other;
     tgtaaggtta agtaattaag taaggtgtag atattgttat caaatattag ccagtatgcg        60
     cctacaaatt aatattgaga actatgcttc agtttatata aataaaccta aacgattatt       120
     tgattgtacc gaatgccggt taatgtatcg atttgtctat gacaacactg tgaacgaatg       180
     acatttagtt ttgacgtgaa aatgatgcat tctactttgt gaaattgcac cggtcagttg       240
     tcagaaaata aatctattta aattacaacc atcatcgttt aatttgcgat ataaagctga       300
     gatccttca                                                               309
//
ID   Gypsy-7_TrVa-I repbase;    DNA;    INV; 4360 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4360
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 253-253 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4290
FT                 /product="Gypsy-7_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MANDENRDPCGGGASFRLQPLKFDKTLTSKWPKWKNI
FT                 FDLNMKATGKSKSTDEEQKIAILLTHMGEDAIEVFSTFTEDKSTLDKVIKL
FT                 FDNFCVPNLNLAVESFKFSQITQSTDQSFDQFLTELKNQAENCQFVCSCKL
FT                 SYADRIIVDHIIKTIPDKSVQQSLLSQTKTLSLNEVSQICRAAEAGKNYSE
FT                 QLSNNCEAEVNYTRSSNKSSKFNSFSKNHFSNKSEHPYNRSYNEPKAYYCK
FT                 KCGTKHLPASCPAYGKQCPLCGKPNHFEVGCFKRRSSNRNNNFRTVNEIEN
FT                 NKSDSDDSEILGCDSVEIVNCNNISSMDHYWKETILVKNCPIDFKLDTASD
FT                 VNILPLKIFRTISDDADIENTRTKIKAYGGFIFKPLGEVKNFRCQYQQNIL
FT                 NLNFIIVDSDSTPILSGNACRQLNLVQRVNNINVLNNISNSNCSESSRPNT
FT                 CDADLTKSPCFQKEVYPITPNQEKSSSTEKPISAEKENFIETNKDLFSGIG
FT                 KLPYKVKITLSDDAVPVVKPVRRLPEILKEKLRKELNRLEKLDIIEKVEKP
FT                 TDWVHDTVIIEKKDGSVRLCLNPIPLNKYIKREHFLIPTQEELTANLSGRK
FT                 LFTVLDMKEGFHQFQLDDKSSELCTMNTPFGRFKYKRMPYGMSSFPEIFQR
FT                 ENTKIFGDLNGVQVLFDDIIVSGKDEAEHDQNLAAVLKRARENNVKFNKLK
FT                 LQYKSKQVRYGGVVYSIDGVKPDPNKIKAIKNMVAPKDVKTLRRFLGAVNY
FT                 INKFLPAYSKVTAPLRELLKKKVQWKWTSEQEKAFLNIKELVVNAPTLKIF
FT                 NPSQNAEIQCDASKDGLGCCLLQNQQPVAFASRSLNDAEKRYSQIEKEMLS
FT                 VVFAVNRYHQYIYGHDNIKILNDHKPLVTIVKRDLHKNPARLQRMQLKLLK
FT                 YKFTLEYLPGSKMYIADMLSRAFLKDKFPEDIDMTQVVHAITLEEVLPIPS
FT                 SDILKLQAATAADQDLSALTNFIRSGWVSVNPKTLNKELKIFYGLRDELSE
FT                 NEGLIFLNDRLVIPKELRNYMVNLVHSKAHLGITKTVARIKGIMYWPSMFE
FT                 NIADLINSCATCQRFQNNNVKEPLIPSETPQFPFQIIGIDIGEHQKKTFLV
FT                 VEDYYSKWLDIIPLASKTPTEIIKKLKILFCNHGTPTDLRCDNNPFKSEEM
FT                 SKFAEEWNFRIVTSSPRYPRSNGLSEKGVGIAKKLIKKASHSENDLYEALQ
FT                 EYRNTPIIGLNLSPSQLLMGRLLRNKVPTTVNLLKPRIPDNDAIRQRMENI
FT                 KRKAKAHHDKTAKQREPFHLGQSVYMRWDDYWKEATITKILSEPRSYLVQS
FT                 IDGTVYRRNSSFLRPRRTQTLSSPPRAKPNSQNNKQSLKFNHFLFQLPKSI
FT                 ISDAPARATTTPDALIPAIVNPPVPGRAVEQHPSIPVSHCTNRPKRAIVKP
FT                 RKLLDYL"
XX
SQ   Sequence 4360 BP; 1542 A; 905 C; 771 G; 1142 T; 0 other;
     tggtgtcaag tgtaaattcg tataaaaatg gcaaacgacg aaaaccgaga cccgtgcggc        60
     ggtggtgctt cattcaggct ccaaccttta aaattcgaca aaacactaac gtcaaaatgg       120
     cccaaatgga agaacatctt cgatctgaat atgaaagcga ctggtaaatc aaaatcaacg       180
     gacgaagaac aaaaaattgc aatcctcctc acacacatgg gtgaagatgc cattgaagtc       240
     ttcagcacat ttacggaaga caaaagcact cttgataagg tgataaaact ttttgacaat       300
     ttctgtgttc ctaatctcaa tcttgctgtt gaatctttta aattcagtca aattacgcag       360
     tcaacagatc aaagttttga ccaattccta accgagttga aaaaccaagc ggaaaactgc       420
     caatttgttt gctcctgtaa gctatcctat gctgacagaa ttattgtcga ccacattatt       480
     aaaacaatcc cagataaaag tgttcaacaa tcacttctta gtcaaaccaa aactctgtct       540
     cttaatgaag tgtctcaaat atgcagagct gcggaagcag gaaaaaacta tagtgaacaa       600
     ctatcaaaca attgtgaagc tgaagtaaat tatacacgat ctagcaataa gagtagtaaa       660
     ttcaattcat tttctaagaa tcatttcagc aataaatcgg agcatccata caatcgttct       720
     tataatgagc cgaaagcgta ctattgcaaa aagtgcggaa cgaagcattt gcctgcctct       780
     tgtcctgcct atgggaaaca gtgcccactg tgtggtaagc caaaccattt tgaagtagga       840
     tgtttcaaaa ggagatcctc gaacagaaat aataatttta gaactgttaa tgaaattgag       900
     aataataagt ccgattctga cgactctgaa attcttggct gtgatagcgt tgaaatagtc       960
     aattgtaata atatttcttc tatggaccac tattggaaag aaacaattct agtgaaaaat      1020
     tgtccaattg attttaaatt agatactgcc agtgatgtta acattctgcc tttaaaaatt      1080
     tttagaacaa tttctgacga tgctgatatt gaaaacaccc gaactaaaat caaagcttat      1140
     ggaggcttca tttttaaacc tctaggggaa gtgaaaaact ttcggtgcca atatcaacag      1200
     aatattctta acctaaattt catcattgta gactcagatt ctacccccat tcttagtggc      1260
     aacgcttgtc ggcagcttaa cttagttcaa agagtaaaca acattaacgt attaaataat      1320
     atctctaatt caaattgcag tgaatcatcc cgaccaaata cctgtgatgc agatcttaca      1380
     aaatcacctt gtttccagaa ggaagtctat cctattacac ctaatcaaga aaaaagttcc      1440
     tccacggaaa aaccaatctc tgcggaaaaa gaaaatttca tcgaaacaaa taaggatctg      1500
     ttctccggta taggtaagct cccttacaaa gttaaaatca ctttaagcga tgatgctgta      1560
     cctgttgtca aaccagttag aagattacca gaaattttaa aagaaaaatt aagaaaagaa      1620
     ctaaatcgtc ttgaaaaact agacataatt gaaaaagtcg aaaaacccac tgattgggtc      1680
     cacgacactg ttattattga aaaaaaagat gggtctgtaa gattgtgttt gaaccctatc      1740
     ccacttaata aatacattaa aagagaacat tttttaatac ctactcaaga agaacttact      1800
     gccaatttaa gtggtcgtaa gcttttcacc gtcttagata tgaaagaagg attccaccaa      1860
     tttcaactcg acgacaaatc aagtgaactt tgcacaatga atactccatt cggcagattt      1920
     aagtacaaaa ggatgcctta tggaatgtct agctttcctg aaatctttca aagagagaat      1980
     acaaaaatat ttggagacct caacggtgta caagtcttgt ttgacgacat catagtctca      2040
     gggaaagacg aagctgaaca cgaccaaaac cttgcagcag tactaaagag agcaagagaa      2100
     aacaacgtta agttcaataa actcaagctt cagtataaat caaagcaagt taggtatggc      2160
     ggagtagttt attcgattga tggcgttaag ccagacccta acaaaataaa agcaattaaa      2220
     aacatggttg ccccgaaaga tgttaaaaca ctgaggcgat ttcttggtgc tgttaattat      2280
     ataaacaaat tccttccggc ttactcaaaa gttacagccc cgctaagaga gcttttaaaa      2340
     aaaaaagtgc aatggaagtg gacttcagaa caagaaaaag catttcttaa cattaaagaa      2400
     ctggtagtca atgcccccac actaaaaatc ttcaacccta gtcaaaatgc agaaattcaa      2460
     tgtgatgcta gcaaggacgg tcttggttgc tgccttctgc aaaaccaaca acctgtagcc      2520
     tttgcttcaa gaagtctaaa cgatgcggaa aagcgctaca gtcagataga gaaagaaatg      2580
     cttagcgtag tatttgcggt taatcgttac caccaataca tttatggtca tgataacatc      2640
     aaaatcctta atgatcataa accacttgta actatcgtta agagagacct tcataaaaat      2700
     cccgcccgac tgcaacgtat gcaactcaaa ttgttgaagt acaaatttac tttggaatat      2760
     ttgccaggct cgaaaatgta tatcgccgat atgttatcta gagcattctt aaaagacaag      2820
     tttcctgaag acatagacat gacgcaagta gtacatgcta ttaccctaga ggaagtcctg      2880
     cctattccgt ccagcgatat cttgaaatta caagcagcaa ctgcggctga tcaagatttg      2940
     agtgctttaa caaacttcat cagaagcgga tgggtaagtg tcaaccctaa aacacttaat      3000
     aaagaattga aaattttcta cggacttcga gatgaactta gtgagaatga aggtttaatt      3060
     ttcctcaatg atcgtctagt cattccaaaa gaacttagaa actatatggt taacttagtt      3120
     cattctaaag ctcacctcgg aattaccaaa accgttgctc gtattaaagg tatcatgtac      3180
     tggcccagta tgtttgagaa tattgccgac ttaatcaatt catgtgcaac ttgtcaaaga      3240
     ttccagaaca acaacgtcaa agagcctcta ataccatcag aaactcccca gtttccattt      3300
     caaataattg gaatagacat tggagagcat cagaagaaaa cattcctggt cgtcgaggac      3360
     tattactcca aatggttaga cattattcct ttagctagta aaacgcctac ggaaattatc      3420
     aagaaactta aaattctatt ctgtaaccac gggactccga ctgatctaag gtgtgacaat      3480
     aacccgttca aaagtgaaga aatgtcaaaa tttgccgaag aatggaattt caggatagtc      3540
     acctccagtc ccagatatcc aagatccaac ggtctctcgg aaaaaggagt ggggatcgca      3600
     aagaagctca tcaaaaaggc aagccactcg gaaaatgacc tctacgaagc cctccaggaa      3660
     taccgaaaca cccccatcat cggtctgaat ctatcaccaa gccaactact aatgggaaga      3720
     cttttacgga ataaggtccc aacaactgta aacctgctga agccaaggat tcccgacaac      3780
     gacgcaatcc gacaaaggat ggaaaacatc aaacggaaag caaaagcaca tcacgacaaa      3840
     acagcaaagc aacgtgaacc tttccacctg ggacaatcag tatacatgcg atgggacgac      3900
     tactggaagg aagctaccat cacaaaaatc cttagcgagc cgaggtccta tttggttcaa      3960
     agtatcgatg gaaccgtcta tcgaaggaat tcttcatttc ttcgccctcg aagaactcaa      4020
     actctgtcat ctccccctcg tgccaagcct aactctcaaa acaataagca atctctaaaa      4080
     ttcaaccatt ttctgtttca gcttcccaaa agtattattt cagatgctcc agcgcgagcg      4140
     acaacaactc ccgacgcact gattccagca attgtcaacc cgccagtccc tggtcgtgct      4200
     gtggaacagc atccatccat acctgttagt cattgtacca atcgtcccaa acgtgccatt      4260
     gtgaaacctc gtaaacttct ggattatcta taggaaaaaa aagaaagagc ctctcttttt      4320
     tttagctttt ttatttataa ttaaaatctt gtaggaaggg                            4360
//
ID   Gypsy-7_TrVa-LTR repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-7_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-248
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 236-236 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 248 BP; 84 A; 44 C; 41 G; 79 T; 0 other;
     tgttgcatac atgcatattg catagcgcgc cctattgaca aactagagag actgcctctg        60
     taatctctgg agctgagaag atctttgctg taatcactaa cctaagtaaa atgtaagaca       120
     aagcctgacg tgttttagat cgcaaacgaa tcatgaataa tttgaataat taataaagag       180
     tataagtttt atcgttaatc atctaagtta tttacgtcta taatttcacc cggtttccta       240
     ataataca                                                                248
//
ID   Gypsy-80_AA-I repbase;    DNA;    INV; 5002 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_AA_;
KW   Gypsy-80_AA-LTR; Gypsy-80_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5002
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions 1373986 1368985.
XX
CC   Positions [2316-2816] - Reverse transcriptase
CC   Positions [3898-4368] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..3317
FT                 /product="Gypsy-80_AA-I_2p"
FT                 /translation="MSSYVVAPNIEPYRKGQSFATWIRRLAFHFRVNKVDD
FT                 GQRKDQMFLLGGDYLFSVAEKIYPTEALLEEVTYEVLTQKLKEVLDKTDSV
FT                 LLQRYNFSTKVQQAGESASDFIFSLKLLAEHCEFGDQKNRLILDRILVGLA
FT                 DGSLKHRLFTEDSTKLTLDQAEKIIATWEMAAAHTKALTNNEDVGLVASLN
FT                 TRNPLTGGRGAVIQRMREVSQGFRGPVKSRLGVRPAEDRPHSSRVHFKSQH
FT                 SRYRDSSAGPSYNRFRKDEGQWPLDQRYCDFCQRYGHVRRKCYKLKNDRNE
FT                 GVNHINAQAVANETDSLTERLTMLRTGNWDSDDDDSGELQCMHVGSINKIS
FT                 DPCLLNVLIEKIPIQMEIDSGSSVSVMGKHMFASKFNLALSNSSKQLIVIN
FT                 GSKLKVSGKVEVNVECNGRKIKLNMLVLDCDYQFIPLLGRPWLDEFFPNWR
FT                 HFFGNSVQVNNILENQSDALIDEVKRKFSDAFVKNFSTPIKHYEADLVLKS
FT                 DVPIFKKAYDVPYRLREKVLRYLDKLEAEKVITPIQTSEWASPIIVVTKKN
FT                 NGIRLVIDCKVSINKFIIPNTYPLPVPQDLFAKLAGCTVFCALDLEGAYTQ
FT                 LSLSKRSRKFMVINTIKGLFTYNRLPQGASSSASIFQQIMDQVLHGIENVC
FT                 VYLDDVLIAGKDVENCKEKLFIVLDRLSKVNIKINWDKCKFFVTELEYLGH
FT                 IISGKGLTPCSSKIATIREAKIPTNVTELKSYLGLINYYNKFIPNLSSKLY
FT                 YLYNLLKNNVKWEWDSNCDEAFKNSKNLLLETEFLEFYDPEKPIIVVTDAS
FT                 GYGLGGVIAHVVDEIEKPISFTSFSLNAAQKKYLILHLEALALVCTIKKFH
FT                 KYFW"
FT   CDS           3418..4938
FT                 /product="Gypsy-80_AA-I_1p"
FT                 /translation="MGNADFCSRFPLEEAVPIEYDQEFVKSINFGDTLPID
FT                 FLLIAKETKQDSFLQEIMNFMCQGWPKRVPKRFAIIFASQHDLEIINECLL
FT                 FQDRVVIPQVLQNRILKLLHSNHAGVVKMKRLARRSVYWFGINAHIEEFAA
FT                 ACDVCSSMASVPKQNITTKWTPTSRPFSRIHIDFFYFEHRTFLLLVDSFSK
FT                 WVEVEVMNKGTKCSEVLTKLIEYFARFGLPDVVVSDNGPPFNSFSFKSFLQ
FT                 KQGINVLNSPPYNPASNGQAERLVRTVKDVLKKFLLEPEMLKLSLEDQIIF
FT                 FSFNYRNNNLTMEGSFPSEKVFAYTPKMLIDLVNPKKHYRQMLVPITPDVE
FT                 SVTVSNHTNIQLDPLDALIPGDVLWYKHNVPHMHEKWIKASFLKRLSKNLL
FT                 QIMVGSGATTTAHPTQIRVVKNGRGASDQNRTSMRVVQTGRQLPTDAPESE
FT                 MPIENDEITVRQLPDLSDDATEVSTTRRARKRKLIEPAELTGLPRRSSRIK
FT                 RSRLDSEFEYY"
XX
SQ   Sequence 5002 BP; 1537 A; 864 C; 1095 G; 1506 T; 0 other;
     ttttagtggc gacgagagaa tttggaagcg gcggaatctg gcacgaccat ttcgaagaac        60
     ggattttccc tttccgtaga acgagctgga gtaggcagcg aaaattagct ggtgacaatc       120
     cggtttaagg tagaaggtaa tagtggaaaa agtggtgaaa ccgcagctat tgtttgaagg       180
     tgaacagctg gcgtggtttt tcggtggtaa caaaaggaaa taaagcgcct ttgttaattg       240
     gaacgccatt tgcgttcgtt ggtggcgtgg cgtcgtttca ttgtgaacaa aagaatagtt       300
     tattagaact gagattttgg agtaggacta cgtttctgct tactatgaat tcttttaaac       360
     atattgaaga gttaaatatc agttattaag agtgtctttt tcctttattt ttgagaggtt       420
     atacatcgta acatcttgcg gcggaccttg cccttgccgt taaggatcta ctacgtttca       480
     tccggtggat ttctggtacc ttcttagcat cttggtttgg ggataatctg ttcaggtgag       540
     ttttgaaaca tttgacattt taaccttgtg gttgaaacgg agttgcataa attgtgcctc       600
     ttccattttg agtttttttt tttgctcgaa aaaagggata aaaagatatt agattaaaat       660
     tgcactattc aacgaacaat tgccaattat tgttgtgcat ccattcataa atttattatc       720
     tgtgtttcgt gtagatattc gctaatatgt catcttatgt ggtggctccc aacattgagc       780
     cctaccgtaa gggacagtct ttcgctacgt ggatacggcg acttgctttt cacttccgag       840
     ttaataaggt cgacgatggt caaaggaagg accagatgtt cctcttggga ggcgactatt       900
     tattcagcgt tgccgagaaa atttatccta cggaagcgct gttagaggaa gtgacctatg       960
     aggtacttac ccagaagctc aaagaagtcc tggacaagac ggattctgtc ttgcttcaga      1020
     gatacaattt tagtaccaaa gttcagcaag ctggcgagtc agcgagcgac tttatttttt      1080
     ctttaaagct tcttgcggaa cactgtgaat tcggtgacca aaagaaccgc cttatacttg      1140
     accgtattct cgttggtttg gctgatgggt cactcaaaca tcgccttttc acggaagata      1200
     gcacaaaatt gaccctggat caagccgaaa agattatcgc gacttgggaa atggcggcgg      1260
     ctcatacaaa ggctttgaca aacaatgagg atgttggctt ggtggcttcg ttgaatacta      1320
     ggaacccact gactggtggt agaggagcag ttatccaaag gatgagggaa gtatcccagg      1380
     gtttccgtgg ccctgtaaaa agccggctag gtgttcgacc ggcagaagat cgtccgcata      1440
     gttcacgtgt acacttcaag tcgcagcatt ccagatatcg tgattcatcc gctggtccat      1500
     cttataaccg atttcggaag gacgaaggac aatggccatt agatcaacgt tattgcgatt      1560
     tctgtcagcg ctatggacac gtgcgaagga agtgttacaa attgaaaaat gatcggaacg      1620
     aaggtgtcaa ccacatcaac gctcaggcag ttgccaacga aacagatagt ttgacggagc      1680
     gactgaccat gctgagaacc gggaattggg attcggacga cgatgattca ggtgaattac      1740
     aatgtatgca tgttggttct atcaataaga ttagtgatcc ctgtttgtta aatgttctca      1800
     ttgagaaaat tcccatacag atggagatag acagtggttc ttctgtatct gtaatgggaa      1860
     aacatatgtt tgcttcaaaa ttcaaccttg ctctatctaa cagctccaaa cagctaattg      1920
     tgataaatgg gtctaaattg aaagtgtcag gtaaagtcga agttaatgtt gagtgcaatg      1980
     gtagaaagat aaaattaaat atgttggtgc tggattgcga ttaccagttc atcccattgc      2040
     ttggtagacc gtggttggat gaattctttc ccaactggag acattttttt ggaaattctg      2100
     ttcaagttaa caatatttta gaaaatcaat cagacgcact cattgacgaa gttaaaagaa      2160
     aattttctga cgcttttgtt aagaattttt ctacacccat aaaacattat gaggcagatt      2220
     tggttttgaa aagtgacgtt ccaattttta aaaaagcgta tgacgttccc taccgtttaa      2280
     gggagaaagt tttaagatat ttggacaagt tggaagcgga aaaagttata acccctattc      2340
     aaaccagtga gtgggcttcg cctataattg tagtcacgaa gaaaaataat ggtataaggc      2400
     ttgtaattga ctgcaaggtt tctattaata agttcattat tccaaacact tacccattac      2460
     ctgttcctca agatcttttc gctaaattgg ctggatgtac tgttttttgt gcattggatt      2520
     tagagggcgc ttatacccag ctctcattat cgaaacgatc aagaaagttt atggtaatta      2580
     acacaattaa aggactgttt acctataata gattgccaca gggggcttcc tctagtgcat      2640
     ctattttcca gcaaattatg gatcaggtgt tacatggtat tgaaaacgtt tgcgtctatt      2700
     tggacgatgt tttgattgca ggaaaagatg ttgagaactg taaggaaaaa ctttttatcg      2760
     ttttggatag gttgtctaaa gtaaatatca aaataaattg ggacaaatgc aaattctttg      2820
     tgactgaatt ggaatatctt ggtcatataa tcagtggaaa gggcctaaca ccatgttcta      2880
     gcaaaattgc aacaataagg gaagctaaga ttcctacaaa tgtcactgaa ctcaaatcat      2940
     atttgggcct tatcaattac tataacaaat ttatccccaa tttatcttct aaattatatt      3000
     atctgtataa tttgttgaag aacaacgtta aatgggagtg ggatagtaat tgtgatgaag      3060
     cttttaaaaa ttctaaaaac ttattgctag aaactgaatt tttggagttt tatgatccag      3120
     aaaaaccaat cattgtagtc acagatgctt ctggctatgg tttaggcggg gtgattgctc      3180
     atgttgttga tgaaattgag aaaccgatat cgttcacatc cttttcgttg aatgcagcac      3240
     agaaaaaata ccttatttta catttagagg cccttgcgct cgtatgcact ataaaaaaat      3300
     ttcataaata tttttggtaa agagggcaaa cactcaatat ttgtaacaag aattcaacga      3360
     tatatattag aattatccat atatgatttt gaaatacagt acagaccgtc tacaaaaatg      3420
     gggaatgcgg atttttgttc gcggtttcca ttagaagagg cggtgccaat tgaatatgac      3480
     caagagtttg taaaaagtat taattttgga gataccttgc ccattgattt tctgcttatt      3540
     gcgaaagaga caaaacaaga ttcgtttcta caagaaatta tgaatttcat gtgccagggt      3600
     tggccaaaaa gggtacctaa acgttttgca attatttttg caagtcagca tgatttagag      3660
     attatcaatg agtgcttgtt gtttcaagat agggttgtca taccacaggt gctacaaaac      3720
     aggattttga aacttttaca cagtaaccat gcaggcgtcg tcaaaatgaa aagattggct      3780
     aggagatcgg tatactggtt tggaataaac gcacatattg aagaatttgc tgctgcttgt      3840
     gatgtctgtt caagtatggc aagcgtcccg aaacaaaata ttactacaaa atggacaccc      3900
     acttcaagac cttttagtag gattcatata gatttttttt attttgagca tcgtaccttc      3960
     ttattattgg tagatagttt ctccaaatgg gtggaggtag aagtgatgaa caaaggtact      4020
     aaatgttcag aagttttaac gaaacttatt gaatattttg ctcgttttgg attgccagac      4080
     gttgtagtgt cggacaatgg tcctcctttt aactcgtttt cgtttaaaag tttccttcaa      4140
     aagcaaggta taaatgtatt gaacagtcct ccttacaatc ctgctagtaa tggccaggcg      4200
     gaaagactcg taagaacggt gaaggacgtg cttaagaaat tcctactaga accagaaatg      4260
     ctaaaattga gtttggaaga ccagataatt tttttttcat ttaactatag aaataacaat      4320
     ttgacgatgg aaggcagttt cccttctgaa aaggtttttg cttatacacc aaagatgttg      4380
     atcgatttgg ttaacccaaa gaaacactat aggcagatgc tggtaccaat aacccccgat      4440
     gttgagtctg taactgtttc aaatcatact aatatacaat tagatccgtt ggacgcacta      4500
     atacctgggg acgtgctgtg gtacaagcac aacgttccac acatgcatga aaaatggata      4560
     aaagcatcat tcctaaaaag actttcgaaa aatcttttac agatcatggt tggaagcggg      4620
     gcaacaacaa ccgcccatcc aacgcagatt cgagtcgtta agaatggacg tggagcatct      4680
     gaccagaaca ggacgtcgat gcgtgtggta cagactggtc ggcaacttcc gactgatgcc      4740
     ccagaatccg agatgcccat cgagaacgac gagattactg tcaggcagtt acctgatctg      4800
     agtgacgatg caacagaagt tagtacaaca agaagagcca ggaaaagaaa acttatcgaa      4860
     ccggcagagc ttactggcct accgagacgt tcaagtagaa ttaagagatc gagattagac      4920
     agtgaattcg aatattatta aatccaagat tatatcacta gaattgtatt tccttcaaac      4980
     tttccaaagg ggaaaggact at                                               5002
//
ID   Gypsy-80_AA-LTR repbase;    DNA;    INV; 251 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_AA_;
KW   Gypsy-80_AA-I; Gypsy-80_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-251
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions 1368984 1368734.
XX
SQ   Sequence 251 BP; 82 A; 52 C; 47 G; 70 T; 0 other;
     tgtatattga aataacattt gactgaaaac atttatacgt gcgtatgcat attcagcaat        60
     catgttaaga aaagaaagca ttacgcgcaa cactgccagc tacttgctag ctgttctgat       120
     gtcaataaag agatcgaaag atcagttctg atcgtgaagt taatctgaac acaagttgtt       180
     ctttttcaag tcaccctccg gaagaatacc cccgtaatca gtcacccttc ttgaacagta       240
     gtgagcggac a                                                            251
//
ID   Gypsy-80_CQ-I repbase;    DNA;    INV; 4355 BP.
XX
AC   AAWU01003625;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_CQ_;
KW   Gypsy-80_CQ-LTR; Gypsy-80_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4355
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 539-539 (2011).
XX
DR   Genome; AAWU01003625; Positions   46784   42430.
XX
CC   Positions [3228-3689] - Integrase core
CC   'GGCCC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..4343
FT                 /product="Gypsy-80_CQ-I_1p"
FT                 /translation="MFKEDASKLKEEAKVRLLLRKLDTTAHSRYCNYILPK
FT                 LPSAVKFDDTVATLRKIFGSHTSIFHKRYQCLQLAKSEAEDIITYGGKVNR
FT                 ACEDFEFQKVKIVQLQCLIFICGLKSPRYADVRARLLSRIEAETAENPVTL
FT                 QTQIDEFQRLVNLKADTTLVERPSSSKPAVHAVQEKRSGPQQQRPAKTEGK
FT                 LPRTPCWQCGQMHFVRDCPFSGHLCKACNRVGHKEGYCSCVSKPSSSSSKP
FT                 DHSVEEKKKQAMKQQKAKSRGIFVNHVAANRSRRKYLPITINGVATQLQLD
FT                 TASDITVVAKATWRKLGQPCLQPSSIQAINASGQPLGLVGEFVCDVTLNGR
FT                 TERSRCFVTSSPGLNLLGIEWIELFELWSVPIDSICNVVEVKSVEEQLQEL
FT                 RANHAAVFDDSLGHCTKTKVKLYLKPNAKPVFCPKRPVPFNTISLVDDELN
FT                 RLQSLGIITPVEFSEWAAPIVAVRKPNGRVRICADFSTGLNEALEANHYPL
FT                 PTPEEIFAQLSGSSIFSIIDLSDAYLQLEVDDDSKKLLTINTHRGLFQYNR
FT                 LTPGVKSAPGAYQSLLDGMIAGIPGVRTFMDDVIVFGPDRKSHASSLKQLL
FT                 QRLKEYGFHVKAEKCSFFQLQIRYLGHIVDSRGIRPDPEKLRTIAAIPAPT
FT                 NVSELRSFLGAVNFYGRFVRNLHELRRPMDQLLKKDTKWRWTSECQQAFEK
FT                 FKEVLQSSLLLTHYDPKLPIIVAADASSTGIGAVILHQFPDGSLKAVQHAS
FT                 RSLTPAERNYGQPEKEALALVYAVTKFHKYLLGRPFTLQTDHKPLLSIFGS
FT                 KKGIPLHTANRLQRWALTMLNYDFEIQHVSTSDFGCADMLSRLIDRTIQPE
FT                 EEYVVAALTLEEDLVSVIADTIDKVPVSFAALQKATATNATLQAVVKYIRD
FT                 GWPSSAGSVTNSEVLPYFRRRESLSLVDGCVMFHDRVVVPNQFRSQILRQF
FT                 HRGHPGMVRMKAIARSFVYWPGLDNEIEDFVKRCNPCSIAGKAPTKTCLES
FT                 WPTPSKPWSRIHIDYAGPVDGVYFLVVVDPFTKWPEVYATRTMTAKTTIKL
FT                 LTQSFATFGIPEVIVSDNGTQFTGHEFKEFCIKLGIRHLRTAPFHPQSNGS
FT                 AERFVDTLKRSLRKIRSGGETLEEALQTLLQVYRSTPTSDLDGKSPAEVMF
FT                 GRPVRTISALLQPTKDNSPSTSARAEKQNDAFNKKHGAIQRIFKHGDAVFA
FT                 QVHRANSWQWEAGTVIEKIGRVNYNIFLDDRRRLIRSHANQLKTRVSETTA
FT                 SPEPTPLSIFFDGFGLADAVAAPVPATPVPVPVPVDDSDPEFSDDDSEESD
FT                 DQEQSGSSEAEFEDAAVEPPAPAALPAERASGGQGHPVPEAPQGAPAGGGR
FT                 GQRAIKLPGRFSNFWMK"
XX
SQ   Sequence 4355 BP; 1053 A; 1300 C; 1159 G; 843 T; 0 other;
     atttggcgac gaggaaaaac cggaagcatg gcggaactac aacaggcgat cctcaagatt        60
     acggaattgc tgcagaagat ggcggcaccg gcggcagcac cagataacag atcctggagt       120
     cgctggccac caacatcagc gagttttctt tcgacgaaga gaacggtgtc actttcgaca       180
     agtggttccg gcgttacgag gacatgttca aggaggacgc gtccaagctg aaggaggagg       240
     cgaaagtgcg acttttgctc cggaagttgg acaccaccgc acacagccgc tattgtaact       300
     acatcctgcc caagcttcca agtgccgtca agttcgacga caccgtggcc acgctacgga       360
     aaattttcgg ctcccacacc tccatcttcc acaaacgcta ccagtgtctc cagctggcca       420
     agtcggaggc ggaggatatc atcacctacg gaggtaaggt gaaccgggcg tgtgaggact       480
     ttgagttcca aaaggtgaag attgtacaat tgcaatgcct catcttcatc tgcggtctta       540
     agtcacctcg atacgccgat gttcgggcaa gactcctttc ccgcatcgaa gcggagaccg       600
     ccgaaaaccc tgtgacgctc caaacccaga tcgacgagtt tcagcgcctc gtcaatctca       660
     aggcggacac gacgctggtc gagcggccat caagctcaaa accagcagtc cacgcggtcc       720
     aggagaagcg aagcggtccc cagcagcagc gtccggcgaa aaccgaaggc aagttacccc       780
     gaaccccctg ctggcaatgc ggccaaatgc actttgtccg ggactgtccg ttttcggggc       840
     atttgtgcaa ggcatgcaac cgagttggcc acaaggaagg ctattgcagc tgcgtttcca       900
     agccttccag cagctcttcc aagccggatc attccgtgga ggagaagaaa aagcaggcga       960
     tgaagcagca gaaagccaag tcgcgaggaa ttttcgtcaa ccacgtggct gccaatcgca      1020
     gcaggcgtaa gtacttgccg atcaccatca acggcgttgc tacgcaactg cagctcgaca      1080
     cagccagcga cataacggtg gttgccaagg caacgtggcg caagctagga cagccatgtt      1140
     tgcagccatc ctccattcaa gcaatcaacg cgtccggcca gccgctcggg cttgtcggcg      1200
     agttcgtgtg tgacgtcact ctcaacggca gaacagagcg cagcagatgc ttcgtgacgt      1260
     catcgcctgg actcaacctt ctgggaatcg agtggatcga gctctttgag ttgtggtccg      1320
     tgccgatcga ttccatttgc aacgtcgtcg aggtcaagtc ggtggaggag cagcttcaag      1380
     agcttcgagc caaccacgcg gccgttttcg acgattccct gggacactgc accaagacga      1440
     aggtaaagct ttatctcaaa cctaacgcca agcccgtctt ttgtcccaaa agaccagttc      1500
     cgttcaacac catttccctg gtcgacgacg agctcaaccg cctccaatct ctgggaatca      1560
     tcacacctgt tgaattctcg gagtgggccg ctccgatcgt cgctgtgcgc aagccgaacg      1620
     gacgagttcg catctgtgcg gatttctcaa ctggtctgaa cgaagcattg gaagccaacc      1680
     actacccgct gccaacaccg gaggaaattt ttgcgcagct gtctggcagt tccatcttca      1740
     gcatcatcga cctctccgat gcgtaccttc agctcgaagt tgatgacgac tccaagaagc      1800
     tcctcaccat aaatacgcat cgaggtctgt tccagtacaa tcgcctcact ccgggggtga      1860
     agtcagcgcc gggagcttac caaagcctcc tggacggaat gattgcgggc atacctggcg      1920
     tccgcacctt catggacgac gtcatcgtgt tcggaccaga ccggaaatcg cacgcatctt      1980
     cactcaagca gttgctccaa cgtctcaagg agtacgggtt ccacgtcaag gccgagaaat      2040
     gcagtttctt ccagctgcaa attcggtatc tgggacacat cgtggacagt cgaggcatcc      2100
     gccccgatcc cgagaagctg aggacgattg ccgccattcc agcaccaacc aacgtgtccg      2160
     aactgcgatc gttcctgggc gcggtgaact tctacggaag attcgtgcgc aaccttcacg      2220
     agctacgccg cccaatggac cagctgctca agaaggacac caagtggcgt tggacatccg      2280
     agtgccagca ggcgttcgag aagttcaagg aggtgctcca gtcaagcctg ctactaactc      2340
     actacgatcc gaagctgccg atcatcgtag ccgcggacgc gtcgagcacc ggcatcgggg      2400
     ccgtcatact ccaccagttc cctgatggct cactcaaggc agttcaacac gcgtcaaggt      2460
     cgctcacacc cgctgagcgc aactacggac aacctgaaaa ggaagcgctc gcgttagtat      2520
     atgcggtaac gaagttccac aagtacctgc tgggacgacc cttcacactg caaactgacc      2580
     acaagccgct cctgtccatc ttcggctcga agaagggaat tccactgcac accgcgaatc      2640
     gcctccaacg ctgggcactc acaatgctga actacgattt cgagatccag catgtgtcca      2700
     cgagcgactt cgggtgtgcc gacatgttgt ctcggctcat cgaccgtacc atccaaccgg      2760
     aagaggagta cgtcgtggca gcactcacgc tcgaagagga cctggtaagc gtcatcgcag      2820
     acacgatcga caaagtgccg gtctctttcg cagctctcca aaaagccact gcgacgaacg      2880
     ccacactcca ggccgtggtc aagtacatcc gcgacggatg gccaagcagc gcgggatcgg      2940
     tcaccaactc tgaggttctt ccctacttcc gccgacggga atcgctcagt cttgtcgacg      3000
     gctgcgtgat gttccacgac cgagtggtgg ttccgaacca gttccgttcc cagattttgc      3060
     gacagttcca ccgtggacat cctggaatgg tccgcatgaa ggcgattgcg cgcagtttcg      3120
     tctactggcc cggactagac aacgaaatag aagatttcgt taaacgatgc aacccttgct      3180
     ccatcgctgg aaaagcaccc accaaaacgt gcttagaatc gtggccaact ccaagcaagc      3240
     cgtggtcccg gatccacatc gactacgccg gtcccgtgga tggcgtgtac ttcctggtgg      3300
     tggtcgaccc attcaccaaa tggcccgaag tgtacgcaac tcgaacgatg acagcgaaga      3360
     cgaccatcaa gctgctgacc cagtcattcg ctacgttcgg tattccggag gttattgttt      3420
     ccgacaacgg aacccagttc actggccacg agttcaagga gttctgcatc aagctgggaa      3480
     ttcgccacct tcgaaccgct ccgttccacc cacaatcaaa cggatcggcg gaacgatttg      3540
     tggacacgct gaagaggagc cttcgcaaaa ttcgctcggg gggagaaacc ctggaggaag      3600
     cactgcagac gcttttgcaa gtgtaccgct cgaccccaac cagcgatctc gatggcaagt      3660
     ctccggcgga agtgatgttc ggccggccag tccggaccat ttctgctctc cttcaaccga      3720
     ccaaggataa ttcgccaagc accagcgcta gggcggagaa gcagaacgac gcttttaaca      3780
     aaaagcacgg cgcgatccaa cggattttca agcacggcga tgccgtcttc gcgcaggtcc      3840
     atcgtgccaa ctcctggcag tgggaggctg gtaccgtgat cgagaagatc ggcagagtca      3900
     actacaacat attcctcgac gaccgccgac gcttgatccg ttcgcacgca aaccagttga      3960
     agacacgagt ttccgagacc acagcctcgc cagagccgac gccgctctcg atctttttcg      4020
     acggttttgg attggccgat gcggtagcag caccagtgcc tgcaactcca gtgccagttc      4080
     ctgttccagt tgacgacagc gatccggaat tctcggacga cgactctgaa gaatctgacg      4140
     atcaggagca atccggttca tccgaagcag agttcgagga cgcagctgta gaaccaccgg      4200
     cacctgccgc tctcccggcg gaacgagctt ctggaggaca aggacatccg gtacctgaag      4260
     cacctcaagg cgcgccagct ggtggaggac gaggacaacg cgcaatcaag cttccaggaa      4320
     gattttccaa cttctggatg aaataagggg agaga                                 4355
//
ID   Gypsy-80_CQ-LTR repbase;    DNA;    INV; 157 BP.
XX
AC   AAWU01003625;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_CQ_;
KW   Gypsy-80_CQ-I; Gypsy-80_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-157
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 540-540 (2011).
XX
DR   Genome; AAWU01003625; Positions   42429   42273.
XX
SQ   Sequence 157 BP; 38 A; 43 C; 33 G; 43 T; 0 other;
     tgttccatcc ccaccatcga gcgcccatcg cagtaggctg cgcctgtggg tggtggagaa        60
     aattaagttc ggtttcaaca accacgcaaa ccagtacgaa atatattcgc tcttacgttt       120
     tgtactacac gtgtttcatt cgtttccgga cacatca                                157
//
ID   Gypsy-80_DEl-I repbase;    DNA;    INV; 5945 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_DEl-I;
KW   Gypsy-80_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5945
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (24-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed, sampled, old, partial sequence. 5'-end is
CC   missing. Not a consensus.
XX
SQ   Sequence 5945 BP; 1773 A; 1539 C; 1364 G; 1269 T; 0 other;
     agtacggcaa ttattattat tacttaaaga aaaaaatata tgtgataata atatatatgc        60
     tttaataatt ataaagtaca acactaaaaa aaaataataa aataaattaa ataaaataaa       120
     taaatactgc taataataca tacaaattat aataatttat acactggaat taaaacctat       180
     aacgctggga aaacaaaaat aataagaact aaaataaaat aaataaataa aataaaataa       240
     aacccaatac aaacaatgca aaataaaatt taaaaggaaa aaaaaaatgt tgtcaaacaa       300
     gaccatagaa gacgagatgg acgaagtaaa taccacggcg cagagcaaag atgtagcaaa       360
     caatcctgtt gagtatgttc caattagact taggaatcct gggataggga gaacttggat       420
     atattcccgt cgtaaggagg aattataagc cttcgcagta gagtttgagt tcgcgtcagg       480
     gggccgcgtc gaggatcttc acaaaaattt tgcccccttc gttaagcact cggagctgac       540
     tgacgcagtc tgggcaaatc taaaggccct cgaaattatt attatttttc ttcacgtgcc       600
     ccaagcccaa gcccgggaga agaaaaggac aacactgccg acgacaaggc ctccgtgtca       660
     aatgcaatta tgaataggaa tatgcacaca ctgctcctcc ccggtagcct acttcccggt       720
     aatcttcccc ctggtagtcc cggcattacc atacacgcac cacagactca aggagttccg       780
     gggatcgaag tccctcgtac ttttacatgc accctgggaa gaattcgcaa gtggggatta       840
     caattttatg gccgatccga cccccttacc tttatcgagc aggtatagag tcgcgcaatt       900
     ttctacggca tcgatttgca gacacttgct tgagcaatgg ctgagctttt gatcgaccgg       960
     gcggataaat ggtttcagac cagccgactt ccaggggcgg actggatgac cttccgaaag      1020
     gaatttttag aatcttttta cctccacggt atctccaacg gttagacgat aggataaggg      1080
     ggcgagacca gcaggacgga gagaccttta aggacttcgt gctggatctt cgtgtactaa      1140
     tgaggcacgc gggctacacc gtacaacagg agatcaaccg actctacgag aacgctgcac      1200
     cggagtacca aatgtacata cgtcgcaacg agtttaaaac cgttaaacaa ctgacgaagc      1260
     ttgccacaga atttgaaacc gttaaacaac gttagtcaac gttagacttc ctatgtagta      1320
     tcggaaacac cctgcgctga gaaacgctgg ccctgatccc acgctatcac caggacacga      1380
     caatgagcca gaaaagcctg tcacacacta gaaacatgta gaattaacac ccacgctcga      1440
     atcagaacca ttcgaatcac caggacccac agaaacccct gagacccagt tacacatggc      1500
     aaaagaagca cacgaagaag cgaccttgaa tccccgaaat caaccagcac ggaccataga      1560
     tacggaacca ccacagcaac aagacgcgca gcaggcagcg gaaccaagca ccaagttaaa      1620
     accacgacag aagacacgga gacagcatta cggggaccac agccgttaaa cgaagggcag      1680
     gaacggcaga tacaaaactt tcttagcttc cagcttaaga aattcgagga aatggcaggc      1740
     gtagcgacta tggagcaaca tagaatcact atgcgagatg acaagccgtg taaacaaaaa      1800
     tactttccca agaatcctgc cattcaggag atcattcatt aacaggtaga cgcgctactt      1860
     aagcaagggt gcatagaacc ttttcgcatc ctgcacagcg ctcctttggt actggtgcgg      1920
     aaaaagaccg ggcagtggcg catgtgcgtt gactaccggc agcttaatac tcgatcgatt      1980
     tccgacgcgt accctttaac catattctag agagactcag aaacgcaaag tatataacaa      2040
     cgttggattt ccgcaatggg tattgggaaa taccaatggc gccggatagc cgggaaagca      2100
     ccgctttcac agtaccaagg cggggatttt atcagtggcg agtcatgcgc tttggcttgc      2160
     acatcgcccc cgctacattt cagcggacct tggacagcgt gattggcccg aatatgaagc      2220
     cccatgcctt cgcctattta gacgacataa tcgtcatcgg ggctagcttg gagaagcaca      2280
     tggctaatct ctgtcaggtt tatgaacggc tccgagaagc caatttgcgt attaaccaag      2340
     aaaaatgctc tttcttccag caaaaactaa cgtacctagg gcatgtcatt agtaagcatg      2400
     gtattaatac agagaaggta gccgcaatgc gaaatctaag cccaccagaa aacatccgga      2460
     aactatgaca ttgcttaggg atggcctcct ggtaccggag atatgtttcc agctttgcat      2520
     cagtggtcga accaatgact aaccttctaa gaaagaacca gaagtggacc tggggagaaa      2580
     agcagaacac cgcattcgag cggctcaagg aacttttaac agatgccccg tcctagcatg      2640
     cccagatttt actgagaaga tgactcttca aaccgatgct agtaattacg gactaggcgt      2700
     tgttttgacc cagacagtca acggacagga acgagtgata gcctacgtga gtcgcaaact      2760
     agacgctgcc gagcttaact actcaccaat ggaaaaggaa tgcttgacga tcgtctgggg      2820
     aaatcgcaag ctcatatgct acttcgaaaa ttaccgtttc aacgtaatca ccgatcactt      2880
     agcgcttaaa tggctggatc atatagagaa ccccacgaga agaatagcga gatgggcgtt      2940
     agaactccag caataccaat actacgtcca gtatcgccga gggaaatgca acgtagtcgc      3000
     cgacgctctg cctcgacagc cgctagaaag actacggcgg atcacgacag aaaaccatca      3060
     gtgtaagtgg attcagtgca aactacagga catcaaggat aacccacaga agttacctga      3120
     ttacgttatc gaaaacggtt agctgtatcg ccactaagga catcgccccg acgaccagga      3180
     ctgtatacca tggaaactat gtgtgaccag cgagcatcgc caacgagttt tacacgaatg      3240
     acaggcaggc tatttggggg tacggaaaac cattctccgt atccctcaga aatattactg      3300
     acctggcatg ttccgcgatg tcggagccta tgtacgaaaa tgtgtcttat gccaaaagtt      3360
     taaagcagac caacgaagac cagccggcat gatgctcgcg agacagatcg aggaacaatt      3420
     tgcagtacta tgtgctgact tcgtaggctc gctgtcccgt tccaagcaag ggaaaaactt      3480
     gttacttgtc atcttcgatg cgttcactaa atggattgaa ttgatccctc tgcgcaaagc      3540
     aacctcggcg tctctgattc gaggttttcg gaagcaaata ctagatcact tcggagcacg      3600
     gaagaaaatg gtgtgtgata gcggcaacca tttcacaagc aaagcgtttt gagcttttct      3660
     ctcaggtata ggcgtagaac tcgagtatac agcaccctac tgacctcgcg taaaccctac      3720
     ctgacttact taggcgacca gaagaacaca tgggacactc tcctgataga aatttcactt      3780
     gcattgaact ccagtgattc cgactcgacg agatatagct cagcattcct gctacatggc      3840
     agagaaccgc ggcttcccat agcgttgtac gatcaagtca ccttgggaat gggaaccgta      3900
     ccacagacgg ccacacagaa ggtcgaccac ttacgagaaa tctacagcat cgtccagggt      3960
     aacatacaaa gagccagcaa atatctgtgt attcagtaca atctccggcg cagggagtgg      4020
     cgttcagctc taggatcttt tgttttgcga caacaccaac tttccgaggg attcgctgct      4080
     aaattagcgc ccaagtttga tggaccatat aaattcgtgg ccttctcctc tcccgacatc      4140
     gttcggttac gtctccccgg tgaaatatag gggcggttag ccaatattgc agatttaaaa      4200
     gctttccact ctccatcctc tacaggaaac agcgaatccg aagacgatgc cttcccgttc      4260
     cagccgaagg agacgacacg acgacgccaa tcatcaacga gctgattata tgaataaatc      4320
     attaaacaac cattgttagc ttttaagact ttattcaccg gtacgagatt tgttagctgc      4380
     tgcccgactt taatattaat ttccatatat atatatatat atatatatat atatatatat      4440
     atatatatat gtatatataa tatataatat atataatatt atcctaagct atatactccc      4500
     taattataaa tattctccag gaagcttcca cggattttcg acctttgcag cgacagcgac      4560
     agtgacacca ctccgccacg agttccgtca ccaaagcctc gagacccgcg cctgcgccgc      4620
     gggacgggat acccacaggg tacgcaggtg aaggtcccac gtgccaggtc atctagggag      4680
     tcggacgcag ctcacgaacg cgcgaacgcc agcccccttc aacatggtga ggggatttct      4740
     cacccacgtc gtcgtgccac acccggagac atatgttgcg gatgacagcg acgacgagcg      4800
     gaccagcggt agacgggacg cgtcgagcaa tgacggctac ggaggtgttt cgccttgtta      4860
     ctgcgacgac ccacgctatg ccccattccc agaagcattc gttctggaag acagcgacga      4920
     cagcgacgac agcgacggtc ctcaggctga cgattaggga gccagtggcg gacgcgacac      4980
     gccgagcgac gagggaaccg gctacggagg tgttccccat cgctacttcg agaatattga      5040
     aagatacgtc atccgacaca gtcactggac gcagcttcta cagttccatt gcacctcgtg      5100
     ttggatacgg atgccctttc gaccgacgga atatcccacc gtggaactcc caatctctcc      5160
     ggaacccaac ctcgctctca tcgacgccga cccgagtgaa gacgaagcgg ctattgacct      5220
     gtcgactcca ccatgcgcca ctgtccacgc acactccgct cctgacgccg ccctggacct      5280
     gagaccctca ccgaaggcag cctacatctc cgcgttccac cctgaagcac cggcgatcca      5340
     cgacaccctt tccccgaaag acacccacgc cgctttcaac cagctacccg ctaccattag      5400
     aatgctgcgg gcggaaagca cctatgccgt ccgtcatctg gatcacgcgg gattgtccga      5460
     cacggccagt gggaagtgca tggtctggtc gtccaaatcc agcgactcag acgaagataa      5520
     cgtcatactt cgacgcagcc gcaggaggat acgcagctag caatctgaac agcagcagac      5580
     agtgggggcc atcaagagtg tccgaactcc ttcggacacc agcgccaacg cactaaagct      5640
     ggcgatctcc gccgaggcaa tggacgcctt gatggccgaa ctcccaccag aggtcgaagg      5700
     catggcgctg gactgcttac cggatggaga cggaccatct gcaccaccag tgcacagctc      5760
     tgttcgaccg ctggacgaca ttcttataga ccttccggag aagtggtcct gcgacacgcc      5820
     tgatggaaga atccccaccg gcgtcgcaga aatcgttcaa gcccgttcaa gtgaagctac      5880
     agggtcacct ctcgcacaaa cggcaccatt aggatccttt tcgacccccc gaagtaggaa      5940
     ggggg                                                                  5945
//
ID   Gypsy-80_DEl-LTR repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_DEl-I;
KW   Gypsy-80_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1291
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7072-7072 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 1291 BP; 321 A; 337 C; 295 G; 334 T; 4 other;
     tgtgacgcat cgttccacga agcacacaag attcatttag ttatttagtt acgttactta        60
     gttataagat attatgataa ggttattaat ataagagaaa cattcctgga gtatttttgt       120
     tattatacta gttctaaggg cgcctgtgaa atcaatatac tttaataaga tttaaatcta       180
     agcttaagag ttgccattta cttcgcgcca tgaccaacgt cgccagctcg caagaccttg       240
     ccagatcgcg acgctgtcaa accgccacgt tgacagacca ctatcgatag tcgtagtggg       300
     tactcgatac gtgaaggggt ggcaacctta aaagaatcga tgacgacgaa cgatcgcttt       360
     cgttcgctct cttggttccc ggtcagcggc agggagcaga cgtgtgctcc ggaattcgaa       420
     aagtaaaaat cacgtggctc ggacacaaac gcgggataca gcctgtgtgg cttaaacatt       480
     taagaactcg gtgcagcagc agggaaacaa gccaggtcaa gtgggaataa agtgaatcct       540
     tgtkttttaa cctccgaaac cccagtgtat ttcttaattg cgtagttatc tagaaaaata       600
     accttaacct ttcctgaacc aatagttagt tgcatccctc aggcgtggct acgactaatt       660
     cctggttaat ccagagaacg ttggcgtgcc cctgctggac acatccccga tctccgtagt       720
     tactgatccc cgatctttgc cagtagttag tatccctcag gcgtggctac gaccattcct       780
     gggtaaccag agaacgtcgg cgtgcccctg ttggacatat ccccgatcat taaccgtagt       840
     tattgatccc cgatccttgc cagtatttag aacccctcag acgtggctac gactgttcct       900
     gggtmatcca gagaacgttg gcgtgcccct gtgggattta cctccagttc cctcgcccgt       960
     wgttattgat ccactgcagg cgtggctacg gcaatacctg gtccacccag agaagctggc      1020
     gtgcccctgc gggmtcatat tcctactctt cgcgtccccg caagcatagt tttcgagtag      1080
     ccccgtttcg cacaggcacg tgggagcacc cgctctcggt cccctcttcg cgggctaacg      1140
     gcacggcgtg tccaaaaacc ggagtacaat ttgatccaaa actcgcgctc gcgtattcct      1200
     tttgcaagca agtccccctg taaattacaa atttcttgta aggatctctg gcacgactga      1260
     ggctcatacc ggccagagaa acatcgttac a                                     1291
//
ID   Gypsy-80_LMi-I repbase;    DNA;    INV; 4702 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-80_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4702
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4298
FT                 /product="Gypsy-80_LMi-I_1p"
FT                 /translation="MEPILAQLMEQLKTQNTALQQLLVSFQSTRQSALHVP
FT                 MFPPYDETAEDWCEYEKRLRQHFHAFGVDDQHLCKSLFLSWISPKLYRLLT
FT                 QLVPLKEPSALSFDEMCASLSSFYQKQAHVVASRVAFYQCKKKPDQSYRAW
FT                 AAELQGLSRKCHFVTDKHRESYAHHMVRDAILRSAPDRDVRQRALQLDNPS
FT                 LDEVLHIAQSFEITKAAGAQIESWGDVCDVHLDKTHVDVVSRGGDEEVAAI
FT                 RTQPSRKWAKQGRTHGKQGNIQSSLPSCPRCFSQHARDDCPQRWATCHSCK
FT                 KLGHISSVCKSKLVQVVQENEQDDSSILYVNTTLAASNKLYIEVTILGKQI
FT                 RMQLDTGSAATLITSDTYVLLGSPPLNPVTRKLRTYNKQPISLLGQMELDV
FT                 SYKSVTRTLTVFVVDNTGSENLFGYDAFRLFGFSVDDTVNVVSEEIPYSNL
FT                 ESLFTEFKHLFSPGVGRANNFEAHITLKNTARPKFFRARPLPVALRDDVKK
FT                 ELDRLTVSGVLLPITASEWAAPLVVVRKPNGSLRLCADFKTSVNSQCLIDT
FT                 YPMPRPEEMFAKLAGGQYFSKIDLSEAYHQLPLDEPSRQILVINTPFGLFQ
FT                 YQRLPFGLASSPAIFQRFLEQILVNIPGCVNYQDDIVVTGKTTKEHLANLR
FT                 QLFSVLQTAGVKCNLQKSQFFQPSVVYLGFKLSREGILPLREDVAAIEALP
FT                 RPQNVKELQAFLGAIAYYHKFIPSVAEVAHPLHRLLRKNVSYHWTGECETA
FT                 FHRLKTLLLQAPCLATYTPGQLLVLATDASQHGIGAVLAHRYQDGSERPIA
FT                 YASKTLNPSQQNYSQIEKEALAIVYALRKFSVFLYGTKFHLITDHKPLVSL
FT                 FSPSASLPDKAAHRLQRWALYLSRFNYEIHFRPTTQHANADVLSRLPKGPD
FT                 PAFDKDELLCFHIDEAEQLAVDGFPITGERLAAATAADPVMRQVLQHIREG
FT                 WPDHPSKKASDPLRNYFSLRLRLTSRNGVVLLSTEEATPRVVIPLSLQNEV
FT                 LKLLHQGHWGISRTKLLARRHVYWPGIDADIAHMVASCEVCAAQAPAPKTS
FT                 TVPWPSPTHPWERVHIDFAGRFLGNYWLLVVDSYSNFPFVSRLSSPTTAAT
FT                 LSALSKVFALEGYPKTLVSDNGPQFVSSEFSDFCAHRGIKHVTSPPFHPQS
FT                 NGEVERLVRTFKNQMKKLLTSATTEEALTDFLASYRFTPMGTHSPAELLHG
FT                 RQPRTLLHLIRPPLNAQAPATSGKFSPGATVWVRGYGQGQKWMKGRILEQT
FT                 GRRLYKVRTAAGEVARHYDQLRKRVLPFPSTSPGTEPDTLDMDVDPAPLPQ
FT                 QTPANEEPVQLSHAPTGATDEESGIPMSPIFPPFRHTQQGILQEGESPILG
FT                 SRHPPHRKGHFRPYFKVPSRDFTTNTEEMDTSAVQCIKKRSSHTRHK"
XX
SQ   Sequence 4702 BP; 1217 A; 1275 C; 1024 G; 1186 T; 0 other;
     ctaaatggcg acgagttaag ggatattcta cgatacccgc gtcagtgaaa agtgctatca        60
     gggccactat ggaaccgata ctagctcagt tgatggaaca gctcaagacg caaaacacag       120
     cacttcaaca gctgctcgtc tcattccagt ctactcgaca gtcggcgctg cacgtgccaa       180
     tgtttcctcc atatgacgag actgcagaag attggtgcga gtatgaaaag cgtcttcgcc       240
     aacacttcca tgcattcggc gttgacgatc aacatttatg taagtctctt tttttgtctt       300
     ggatttcccc aaagttgtat cgtcttctga cccagctagt gccgttgaaa gaaccttcag       360
     ccctatcttt tgacgaaatg tgcgcttccc tctcgtcttt ttatcaaaag caggcccatg       420
     tagttgcgtc gcgagtggcg ttctatcaat gcaaaaagaa accggaccag tcctacaggg       480
     catgggcggc cgaattgcag ggccttagca gaaaatgcca ctttgtaacg gacaaacaca       540
     gagaatcata tgcacaccat atggttaggg atgccattct tcgttccgcg ccggatagag       600
     acgtccggca aagggctctt caattggata acccttcttt agacgaggtg ttgcacatcg       660
     ctcaatcatt tgaaattact aaagcagcgg gtgcacaaat cgagtcttgg ggcgatgttt       720
     gtgacgttca tcttgataag acacatgttg acgtcgtttc gcgcggtgga gatgaggaag       780
     ttgcagcaat acgcacgcag ccttcccgta aatgggccaa acagggccgc actcacggta       840
     aacaaggcaa tatacagtct tcgttaccct cttgcccgcg ttgtttttca caacacgcta       900
     gagatgactg cccacaacgc tgggcaactt gtcacagttg caaaaagcta ggacatatat       960
     cttctgtgtg caaatcaaag ctagtacaag tagttcagga gaatgagcaa gacgactctt      1020
     ctattcttta tgtcaacact actttagctg cttctaacaa actttacatt gaagtcacaa      1080
     ttttgggaaa gcaaattcgc atgcagttag acactggatc ggcggctact cttatcacgt      1140
     cagacacgta cgtcttgcta ggttcacccc ctttgaaccc tgtcacgcgc aaattacgca      1200
     cctacaacaa gcagccaatt tcgctgctgg ggcagatgga attagatgtg tcttacaaat      1260
     cggtaaccag aacgcttacc gtttttgtgg ttgacaatac tgggtcggaa aacttatttg      1320
     gatacgatgc ctttcgactg tttggcttct ctgttgatga cactgttaat gtcgtctcag      1380
     aagaaatacc ttactccaat ttagaatctt tgttcacgga attcaaacac cttttctcgc      1440
     caggcgtagg acgcgccaac aactttgaag cccacataac tctcaaaaac acggcaaggc      1500
     cgaaattctt ccgcgcacgc ccacttccag tagccttgcg cgatgacgta aaaaaggaat      1560
     tggacaggct cacagtctcg ggcgtcctat tgcccattac agcaagtgag tgggcggcac      1620
     cacttgttgt tgtacgcaag ccaaatggtt ctctccgcct ctgcgccgat ttcaagacct      1680
     ccgtcaattc acaatgttta attgacacct accctatgcc tcgaccggag gaaatgtttg      1740
     cgaaactagc aggaggccaa tatttttcga aaatagactt atctgaggct tatcaccagc      1800
     tgcctttgga cgaaccttct cgtcagattc ttgttataaa cacaccattc ggtctttttc      1860
     aatatcaacg tctccccttc ggtctggcaa gctcgccggc cattttccaa cgtttcctag      1920
     agcaaatatt ggtcaacata ccggggtgtg taaattacca ggacgacatt gtggtcaccg      1980
     gtaaaacaac caaggaacat cttgcaaatt tacgacaact cttttcggtt ttacagactg      2040
     ctggtgttaa gtgcaaccta caaaaatcac agttttttca accctcggtg gtttatctag      2100
     ggttcaagct ttcccgcgag gggatactcc cgctccgcga ggacgtggcg gccatagagg      2160
     cgctcccaag acctcaaaat gttaaagagt tgcaagcctt cctgggtgca attgcctact      2220
     atcataaatt cataccgtct gtggccgagg tggcccatcc actccatagg ctcctccgca      2280
     aaaatgtctc gtatcattgg acaggggaat gtgaaacggc gtttcaccgc ctgaaaactc      2340
     ttctgcttca ggctccatgc ctagctacat acacgcccgg acagttgctt gttcttgcta      2400
     cagatgcctc acaacacggc atcggagcag tactagccca ccgataccag gacggttcag      2460
     aacgtcccat agcctatgcg tccaaaacac tcaatccttc tcaacagaat tattcacaaa      2520
     ttgaaaagga ggcactggct atagtgtatg ccctacgcaa atttagtgtt ttcctatatg      2580
     gcacaaagtt tcacctaatc acggaccata aacccctggt ttcgctcttc agcccttctg      2640
     cttctttacc tgacaaggcc gcacatcgac tgcaaagatg ggccttgtac ctctctcgct      2700
     ttaattacga gatccacttt cgcccaacca cacaacatgc caatgcggat gtattatctc      2760
     gcctccccaa aggccccgac cccgcctttg ataaggatga acttctctgt ttccacattg      2820
     acgaagcaga acaactcgcg gtggacggat ttccaatcac gggggaacgg ctagctgcag      2880
     ccacggctgc ggatccagtg atgcgacaag ttctccagca catcagggag gggtggcccg      2940
     accatccatc caagaaggcg tcggatccgc ttaggaacta cttctcgctg cgactccgac      3000
     tcacctctcg caacggtgtg gttctccttt ctacagaaga ggctacaccg agagtagtca      3060
     tccctctcag cctacagaat gaagtactga aactattaca ccaaggacat tggggaatct      3120
     cacgaacaaa actgcttgcc aggcgtcatg tgtactggcc gggcatcgac gccgacatcg      3180
     cgcacatggt ggcgagctgt gaggtatgcg ccgcccaggc tcctgcccct aaaacgtcaa      3240
     cagttccttg gccgtcgccc acgcacccgt gggaacgtgt tcacattgac tttgccgggc      3300
     gctttctcgg caactattgg ttactggtag tcgactctta ttccaacttc ccatttgtct      3360
     ccagattatc ctctcccaca acagcagcca ccttatccgc gttatcaaag gttttcgccc      3420
     ttgaaggata cccaaaaaca ttggtatccg acaatggccc tcagtttgta tcctctgaat      3480
     tctcagactt ctgtgcccac aggggcatta aacatgtcac atccccaccc tttcatcctc      3540
     aatctaatgg cgaggttgag cgcctcgtca ggactttcaa aaatcaaatg aagaaacttc      3600
     tgacctctgc taccactgaa gaggcactta ccgacttctt agcctcttac cgtttcacac      3660
     ctatgggcac gcacagcccc gcagagctat tgcacggcag acagccgcgc acacttttac      3720
     acctcattcg tcccccactc aatgcgcaag cccctgctac ttccggaaaa ttttcccctg      3780
     gcgcaacagt atgggtgcgg ggttatggcc aaggccagaa gtggatgaaa ggaagaatat      3840
     tggaacaaac aggacggcga ttatacaagg ttcgcacggc cgcaggagaa gtagctcggc      3900
     actacgacca actccgaaag cgggtcctgc ccttcccaag tacgtcccct ggtactgaac      3960
     ccgacacatt agacatggac gttgacccag caccccttcc tcaacagaca ccggcaaacg      4020
     aagagcctgt ccagctgtcc cacgcaccga cgggcgcaac cgacgaggaa tccggtatac      4080
     caatgtcacc gatattccct ccgttccggc atacgcaaca gggtatactc caggagggcg      4140
     agtccccaat actgggatcc agacatcctc cacatcgcaa gggccacttc aggccatact      4200
     tcaaagtccc gtcaagagac ttcacgacaa ataccgaaga aatggacact agtgccgtgc      4260
     agtgtatcaa aaaacgaagc agccacacac gtcacaagtg attttccagt gtttgagtgt      4320
     ttataaagaa aaaatttttt ttgcaacaac cctgtgctat gtagaagtgc cttttcagtt      4380
     tttctgtttt cttttataca aatgagtaac agtgcacatg aggcaacagt cgtgtgcaaa      4440
     gcttgaacgc cgaagtaggc gtctatgcct cgtgtttctc tccagcagac agctaacaat      4500
     gaatgcatat atttgtcagt gacttacctt cggggcattt tcttgtaaat agcattttct      4560
     ttactttata ttcactgtac actgtgcgtg tctactgata tttctatgta ccagtttttg      4620
     taatcttatc gccacggtat gttatataag agtaataaca attgttccat tcttatcttg      4680
     cctttttaag aggggggaga tg                                               4702
//
ID   Gypsy-80_LMi-LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-80_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-205
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 205 BP; 45 A; 62 C; 56 G; 42 T; 0 other;
     tgttgtggcc gcgccccgct cgaatcgcct gccgcccgcc ggctcgccac atacggcgct        60
     gccctcagcc gcaactagcg ccacctaggc gagcggcctg gcggacgagc gggacgcagg       120
     gcagtttcag ttgagttttc cgatagtcaa caagtgtacg atatatatca catgtgattc       180
     aataaagtac ttttgagata caaca                                             205
//
ID   Gypsy-81_AA-I repbase;    DNA;    INV; 4510 BP.
XX
AC   supercont1.19;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-81_AA_;
KW   Gypsy-81_AA-LTR; Gypsy-81_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4510
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.19; Positions 3747596 3752105.
XX
CC   Positions [3454-3993] - Integrase core
CC   'ATTTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           226..4482
FT                 /product="Gypsy-81_AA-I_1p"
FT                 /translation="MDADQFSRFMDMQRQAMQALIGSMRDVQLKQPAPPVM
FT                 GGSAASSVPLPPPLELEGDMEQNFNFFEENWKTYASAVGMDAWPVEQNKQK
FT                 TSILLSVVGKDALKKYFNFELNNAQQNDPDLALAAIKLKVVRDRNKFVDWF
FT                 DFFSLEQSPAESIDNYLCRVKSLAKLCKFGDLEEDMIKYKLATSIKWMKLR
FT                 SKLITTQNLTEAHAVDLCRAEEITERHPVTVGHASAEVNMVKKSKMRCKFC
FT                 GSKHDFSKGACPALGKKCNRCGGKNHFEKVCKAERKKKLKKKLRVKKVRED
FT                 ASSDSESSESSDSENSESSASESLSIGKIVDKSGGGGHVTADLELKLAGQW
FT                 QSVKCELDTGANTSLVGRNWLETMIGRDKFELKPSAYRLQGFGGSNIPVIG
FT                 QVKLPCRRKGRKYNLVLQVVDVKHGPLLSANVCRILGFVKFCNSVSFIAPK
FT                 TEQELLNVYRVKAQEIIKQHEDVFHGIGKFAGAVTLEIRPDVPPSIQPPRR
FT                 VPIALREKLKVELRNLERDGLIVKENQHTDWVSNIVLVKRKEQKSESIRIC
FT                 LDPIPLNVALKRPHMQFTTIDEILPELGKAKVFSTADVRKGFWHVLLDEKS
FT                 SRLTTFWTPFGRYRWTRLPFGIAPAPDIFQMKLQEVIQGLQGVECVADDLL
FT                 IYGSGDTLEEALENHTFCLEKLLVRLNECNVKLNISKLKLCETSVKFYGHM
FT                 LTDKGIQPDEGKIATIKNFPRPTDRKQLQRFVGMVNYLSRFIPNLSADFTI
FT                 LRRLISEKEDWVWSEKEDEEFDRVKRLVADTKTLQYYNMNEPIVIECDASS
FT                 YGLGAAIFQSHGVIGYASRTLTATEKNYAQIEKELLAILFACVRFDQLIVG
FT                 NPKTTVKTDHKPLVSVFRKPLLSAPRRLQHMLLNLQRYRLTIEFVTGKENV
FT                 VADAISRAPFDENLADDKFNKRDIFRVFREIEEVNISSFLKVKDAQLNEII
FT                 VETESDPSLQQIMQFIQNGWPSSVNQVPDCAKMFFKYRHELSTQEGIIYRY
FT                 DRIVVPYSLRRKLTEKVHVSHNGIEATLKLARANLFWPGMSAQIKEVVTKC
FT                 SICAKFQPSQAPAPMQSHPIPVYPFQLVSMDVFFADYQGKSCKFLVTVDHY
FT                 SDFFEVDLLKDLTPKSTIAACKSNFSRYGKPQQVISDNGTNFINREWRQFA
FT                 RDWDFCHSTSAPHHQQANGKAEAAVKIAKRLLKKAEEAESDFWYALLHWRN
FT                 VPNKVGSSPAVRLFSRNTRCSIPMSTDGLKRKLVTGVPEAIEERRRKAKFQ
FT                 YDRKTRNLPQLETGSAVYVQLNPEVTKKWTPARVSNKLNERSYVVDVHGAQ
FT                 YRRDLVHLKPRNEPETPEVSTNPAIASNVEATVPERSSSDLQLPIPNDEVD
FT                 TSVPTTITPELISTPKPSKTTRISRSSCDPIIEEGKNVRSKRNVKLPVRFK
FT                 DYCLE"
XX
SQ   Sequence 4510 BP; 1348 A; 920 C; 1136 G; 1106 T; 0 other;
     tggtgtcaga agttgtggac taaaagtgta ttccggcgtc atttgtaaat cgcggagggt        60
     gttagtggaa aagttcagtt cgagcggtgg aaaaatcatt tgcagcaagg attgttagaa       120
     gttgtgcggt gaaaagcaaa cttgttgggt cttgtcgtgc gccatatttt ttctgtcgtg       180
     tcggatttga gtgatttccc ggaagtgtta acaaactcaa agaaaatgga tgcagatcag       240
     ttttctcgtt ttatggacat gcaacggcag gcgatgcagg ccctgattgg ttcaatgcgg       300
     gacgtgcagt taaagcagcc agcgccacct gtgatgggag gttcagccgc atcatccgtt       360
     cctctcccgc ccccgttgga gttagagggg gatatggaac aaaactttaa ttttttcgaa       420
     gagaattgga aaacctatgc tagtgcggtt ggcatggatg cgtggccggt agagcaaaac       480
     aagcagaaaa cgagtatttt gctatcggtt gttggaaaag acgcgttgaa gaaatatttc       540
     aacttcgagt tgaataatgc tcagcagaac gacccggacc tcgctctggc agcgattaag       600
     ctcaaagtag tgcgggatcg gaacaagttc gtcgattggt ttgatttttt ttcgctggag       660
     caaagccccg cggagagtat tgacaattat ttgtgccgtg tgaaatcgct tgctaaactg       720
     tgtaaattcg gtgatttgga agaggatatg atcaaataca agcttgctac ctcgatcaag       780
     tggatgaagc ttcgatctaa gttaatcaca acccaaaact tgacggaagc acacgccgtg       840
     gatttgtgtc gtgccgaaga aatcaccgag aggcatccgg taacagtggg ccatgcaagc       900
     gcagaagtga acatggtgaa gaaaagcaaa atgagatgta aattctgtgg cagcaagcat       960
     gacttttcca aaggtgcttg tccggcactt ggaaaaaaat gcaatcgttg tggtgggaag      1020
     aatcactttg aaaaagtgtg caaggcagag cgaaagaaga aattgaagaa gaagctccga      1080
     gtgaagaaag tgcgtgagga tgccagctct gatagtgaat cttcggagag cagcgacagt      1140
     gaaaattccg agtcgtccgc tagtgagagt ttgtccatcg gaaaaatcgt tgataagtct      1200
     ggtgggggtg gccatgtaac cgccgatttg gagctgaagc tggctggtca gtggcagtca      1260
     gtaaaatgcg aattggatac aggtgcaaac acaagcctcg ttggacgaaa ctggctggag      1320
     accatgattg gacgtgacaa gtttgaactc aaaccatcag cataccgtct tcaaggtttc      1380
     ggcggcagca acattccagt aattgggcaa gtaaaacttc catgtcggag aaaaggccgt      1440
     aagtacaacc ttgttttaca agtagtggat gtcaaacatg gaccacttct ctcagcaaac      1500
     gtttgccgaa ttcttggttt cgtaaaattc tgtaactcgg tcagtttcat tgcaccgaaa      1560
     acggaacaag aactgctgaa cgtgtaccgt gtgaaagcgc aggagatcat taagcagcac      1620
     gaggacgttt tccacggtat cggtaaattt gctggtgctg taactttgga aatccgacca      1680
     gatgttccac cttcaattca gccacctcgg agagtgccga ttgcgctgag ggagaaactt      1740
     aaagtagagt tgcgcaatct ggagcgtgat gggctgattg tgaaggagaa tcagcatacc      1800
     gactgggtca gtaatatcgt gttggtgaaa cgtaaggaac aaaagtcgga atcgatccgt      1860
     atctgtctcg atccaatccc gttgaatgta gcgctcaaac gtccgcatat gcagttcacc      1920
     accatcgatg aaatcttgcc ggaattggga aaggcgaagg tgttttcaac agcggatgtt      1980
     cgtaaaggtt tctggcatgt gctgttggac gagaaaagta gccgattgac aacgttttgg      2040
     actccgtttg gccggtatcg gtggactcgt ctaccatttg ggatcgctcc agctccggac      2100
     attttccaaa tgaaactgca agaagttatt caaggactgc agggtgtaga atgcgttgca      2160
     gatgatttgc tgatttacgg ctcaggcgac acgttagagg aagctctgga gaaccacact      2220
     ttctgcttgg agaagctgtt ggttcgcctg aacgaatgca acgtaaagtt gaatatcagc      2280
     aagctcaagt tgtgtgaaac gtcggtaaag ttctacggac acatgctgac agacaaagga      2340
     attcaaccag acgagggtaa gattgcaacc atcaagaatt ttccgcggcc gacagatcga      2400
     aagcaacttc agaggtttgt cggcatggta aattacctca gtcgtttcat acccaatctc      2460
     agcgctgact tcaccattct ccggcggcta atttcggaaa aagaagattg ggtatggtcg      2520
     gaaaaggaag atgaagaatt tgatcgtgta aaaaggctag tagcagacac taagacgttg      2580
     caatactaca atatgaacga accgatagtc atcgagtgtg acgctagttc ttatggtttg      2640
     ggtgcagcta tcttccagag tcatggagta attggatatg cttcacgtac actgacagct      2700
     accgagaaga actacgcaca aatcgaaaag gagttgctcg ctatcctttt cgcctgtgta      2760
     cgttttgacc agttaattgt tggaaaccct aaaactactg ttaaaacgga tcacaaaccg      2820
     ttggtcagcg tatttcgaaa gccattacta tcagcaccac ggcgtctgca gcatatgttg      2880
     ctgaatctac agcgttaccg attgacgata gagttcgtga ccggaaaaga gaacgtagtg      2940
     gctgacgcaa tatccagagc tccgttcgat gaaaatcttg ccgacgacaa gttcaacaaa      3000
     cgggatattt tccgagtctt tcgggaaatc gaagaagtta acatctccag tttcctgaaa      3060
     gtgaaggacg cgcaactaaa cgagatcatc gtagagacag agtcggaccc ttcgttgcag      3120
     cagatcatgc aatttattca aaatggctgg ccgtcatcgg taaaccaagt cccagactgc      3180
     gccaaaatgt tttttaagta cagacacgaa ctaagcacgc aagaaggaat catctatcgt      3240
     tacgacagaa ttgtggtacc ttattcgcta cgtcggaaat taacagaaaa agttcatgtt      3300
     agccacaatg gaatagaagc gaccttaaag ttggcacgcg ccaatctttt ctggcctggc      3360
     atgagtgccc agattaagga agtcgtcaca aaatgcagca tctgtgctaa atttcagcca      3420
     tctcaagctc cagccccgat gcaaagccac cctattccgg tgtatccatt tcagttggtg      3480
     tcaatggacg tgttcttcgc agactaccaa ggaaagagct gcaaatttct tgttaccgtt      3540
     gaccactatt cggatttttt cgaagttgac ctcctgaaag atttaacgcc gaagtcgacg      3600
     attgctgcat gcaaatccaa cttttcgcga tacggaaaac ctcaacaagt tatttcggac      3660
     aacggaacaa attttatcaa cagagaatgg agacaatttg caagagactg ggatttctgc      3720
     cattcaacat cggctcccca tcatcagcaa gctaacggaa aagctgaagc agccgtgaaa      3780
     atagcgaaaa gattattgaa gaaggcagag gaagctgaaa gcgatttttg gtacgcatta      3840
     ttgcattgga gaaacgtgcc gaataaagtt ggttccagcc cggcagtacg gctgttttca      3900
     agaaacactc gctgtagcat accgatgtct acagatggtc taaagcgaaa acttgtaact      3960
     ggagtaccag aagcaattga agaaagaaga agaaaagcaa agttccagta cgatcgaaaa      4020
     accagaaatc ttccgcagtt ggaaacagga tccgcagtct atgtacaact aaacccagaa      4080
     gtcaccaaga agtggacacc tgcgagagtc agtaacaagt tgaatgagcg atcgtatgtt      4140
     gtagacgtac atggtgcaca atatcgacgt gatctagtgc acttgaaacc acgtaatgaa      4200
     cctgaaacgc ctgaagtgag taccaatcca gctattgctt caaacgtcga agcaactgtt      4260
     ccagaaaggt cgagtagtga tttgcagttg ccgataccta atgacgaggt ggatacgagc      4320
     gtacctacta ccattactcc ggaactgatc tcaacaccga agccgtcaaa gactacgaga      4380
     atttccagat catcttgtga tccaataatc gaggagggta aaaatgttag atctaagaga      4440
     aatgtcaaat taccagttcg tttcaaagat tactgtcttg aataatttct tttttataaa      4500
     acagggagga                                                             4510
//
ID   Gypsy-81_AA-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   supercont1.19;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-81_AA_;
KW   Gypsy-81_AA-I; Gypsy-81_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-204
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.19; Positions 3747392 3747595.
XX
SQ   Sequence 204 BP; 58 A; 41 C; 34 G; 71 T; 0 other;
     tgttgcatta tgtagttatt gaacgccaca tgagaatgta atttgtcaac gacccttttg        60
     tacgtcattc attacgcgcg cattcctctc cattgactag ttttccattc attctgtatc       120
     cgagtgcgta tcagtaagaa cgttgaataa agctagtttg taaaccgttt cccgaaatat       180
     tttatttgat gaccaaataa aaca                                              204
//
ID   Gypsy-81_CQ-I repbase;    DNA;    INV; 7372 BP.
XX
AC   AAWU01003442;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-81_CQ_;
KW   Gypsy-81_CQ-LTR; Gypsy-81_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7372
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 541-541 (2011).
XX
DR   Genome; AAWU01003442; Positions    4489   11860.
XX
CC   Positions [3366-3887] - Reverse transcriptase
CC   Positions [4851-5327] - Integrase core
CC   'CCAG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           571..2559
FT                 /product="Gypsy-81_CQ-I_1p"
FT                 /translation="MEVKHMLSQYYGMNASHLTIDEFSHELHIRKLPLDGA
FT                 RSQLEKVLYNHLKQERKQLNVSYEFVSDSVDEELGVCEDKLDFIKNHLETS
FT                 RAAKAPGQVYKTRLIHMLFRMERLKKHITENADLDRLAVVAVEIVRLLSVY
FT                 YSIVSPIPEVRAAEWELINQSITVAKKQLEENTPGDENGSGGDGTEKSDQT
FT                 GALVERRESDKRTAGDDGEEKQKLVDQNQELRLAVSALLQRIETLELKQPE
FT                 KDPATAANSTQIASNENGKQSGETGKAEPDFFIWLKEKVGSLDNSRDSEQN
FT                 NKEKPKSKPEQSSGNEKSKDNRNRLPVHKWTVRYDGMDNGRRLNEFLKEVE
FT                 FNARSEGFSEAELFQCAHHLFTHKARSWFMEVNGNNELGTWRRMVKELKNE
FT                 FLPIDIDYVYERQVYNRKQGAREKFHDFYLDMARIFRNMSQQWDEKRKFDS
FT                 LFRNTREDCQIAMLAANIQDIAAMKEFGKKFDSINWQLYKRKESRFTPRTA
FT                 HVEEVGELRRPYGGNGNGNRFQNNNQDGRGYYQQQKPQVKGFQKGNWNQRP
FT                 PKQEQQQYQQRNQQYHQQPKNREQSQREEKAKPKQDNQQRSKSPVQGPSGT
FT                 DPLQRIVRAYIPIKRGVCYNCHEEGHGFSECPKNRNVFCERCGFPGFDTRT
FT                 CPFCESKNLQRTAQ"
FT   CDS           2874..5699
FT                 /product="Gypsy-81_CQ-I_2p"
FT                 /translation="MNVVGCADVPITFNEETKILPVLIAPDLKRRCILGYD
FT                 FWQKFGIRPSVHQSIETLDEGDDQILEEERLDEHQIQQLEEVKKLFLTASP
FT                 GNLGKTGLIEHKIELKEEFQGADPVRKNPYPWSPEIQRRIHRAVDLLLRDD
FT                 IIEPSSSEWALPVVPVKKRDSDEVRLCLDARKLNERTKRDAYPLPHQNRIL
FT                 SHLGPFKYLSTIDLTQAFLQVPLDQESRKYTAFSVPGMGLFQFKRLPFGLI
FT                 NSPATLSKLMDKVLGQGALEPSIFVYLDDIVVVSQDYDDHIAKLRDLARRL
FT                 KDANLSINVEKSSFCCHELPYLGYILSRNGLRPNPDRVRAILGYEVPNSVR
FT                 SLRRFLGMINYYRRFIENFSELTAPLTDLLKNKPKRVQWNTAANEAFQAIK
FT                 ERLISAPVMANPDFNLPFTVQTDASDTALAGVLTQVQGGEERVIAYHSEKL
FT                 KGAEQNYHAAEKEGLAALRCIEKFRCYIEGTHFKLVTDSSALTFIMRAKWK
FT                 SSSRLSRWSIILQQYDMEVIHRKGKDNVVPDALSRSIEVLDTEVEDSWYKR
FT                 LYASVERDPEKYMDFKIENKKLYKLVSARSDVLDYRFEWKECVPESLRPQV
FT                 MRQEHDGKMHIGYEKCVDTLKRRYYWPRMSADLKSYIAKCEACKMNKHSTT
FT                 ASVPEMGKQRVATRPFQIVCMDYIQSLPRSKHGNAHLLVIMDIFSKYCLLI
FT                 PVKKIAAGNLCTNLEKEWFRRFAVPEYVITDNATTFMSKEFKELLDKYGVQ
FT                 HWANARHHSQANPTERLNRTINSMIRTYVRQDQKLWDTRISEIEYVLNNTV
FT                 HSSTKFTPHRIIFGHEIVSKGDEHRLEQDEEFSEEERMNKLRGVTKKVWET
FT                 VRENLKKAHESTKKQYDLRHKRYSPTFDIGQRVFKRSFKQSSAGDNFNAKL
FT                 GPPYTPCIITAKKGTSSYAVSDMNGKPLGVFSAADLKA"
XX
SQ   Sequence 7372 BP; 2226 A; 1460 C; 1836 G; 1850 T; 0 other;
     ccagttgtta tacttggcgc ccaacaagaa tagcttagct tattcaggct cgggaaaacg        60
     atgcattaat gagaggtcga cagattcttt ggtaaaactt ccgcaactat actagctcaa       120
     cttgcaaaaa actttacgct actttgagtg gctaaattta actaagatca tttagtattt       180
     gaggggtctt gaagatgttt taagggagga agactaccaa cactggaaag acacaaattg       240
     aacagaaaaa gtcggagaat tgttcatact tactcaactt gttacttttg gaaaaatccg       300
     gagttcttta ctcatgaagt gcagtccttg gcaggacaaa taaaacacca gacggaaaca       360
     gtcgtttatt ttcgttaaaa ttttgtaccc tgtacaattt gcttgatttt cgaggatttt       420
     ctaattgatt acttctgtga tacttaggca ctatttttca attttcactg ttgcttgatt       480
     gcttctagga agcgtgaata aattttaggt tttccaattt ttagtatttc tttttaaatt       540
     ttaattgttg tgtttctaaa cgataccata atggaggtga aacatatgct gtcgcagtac       600
     tatgggatga atgcatcgca cctgacgatt gatgagttca gccatgagtt gcacatccgc       660
     aagttgcctc tggatggagc acgcagtcag ctggagaagg tgttgtacaa tcatctgaaa       720
     caggaaagaa agcagcttaa tgtgtcgtat gagtttgtga gtgattcggt agacgaagaa       780
     ctaggtgtgt gtgaggacaa actagatttt atcaaaaacc acttggaaac cagccgtgcg       840
     gcgaaagcac ctggtcaagt gtacaaaacg agattgattc acatgttatt taggatggaa       900
     cgattgaaga aacatatcac cgaaaacgca gacttggaca ggttggctgt ggtggctgtg       960
     gagatagtta gactgttgag cgtgtactac tccattgttt ctccaatacc ggaagtaaga      1020
     gcagctgagt gggagttgat taatcagagc attacggtgg cgaagaaaca attggaggaa      1080
     aatacaccag gagacgagaa tgggtcagga ggcgatggta ctgagaagag tgaccaaaca      1140
     ggagcacttg ttgagaggcg tgaaagcgat aagagaactg ctggcgacga tggtgaggaa      1200
     aagcaaaaat tggtcgatca gaaccaggag ttacgactag ctgtgagtgc tttactccag      1260
     cgaatcgaaa ctcttgagtt gaaacaaccc gaaaaagatc ccgccacggc cgccaacagc      1320
     actcaaatcg cgagtaacga aaacggcaag caatcaggag aaactggaaa agcagaaccc      1380
     gatttcttca tatggttgaa ggaaaaggtt ggctcgttgg ataactctcg agactcggaa      1440
     caaaataaca aggaaaaacc gaagtccaaa ccagaacagt cgtctgggaa tgaaaagtcg      1500
     aaagataacc gaaaccgttt accggttcat aaatggacag tacgatacga cggaatggac      1560
     aacggtcgca gactgaatga gttcctgaaa gaggttgaat tcaacgctcg ttcagaagga      1620
     ttttccgagg cggagctttt ccaatgtgcg caccacctgt tcactcacaa agccagatcg      1680
     tggttcatgg aggtgaacgg gaacaatgaa cttggaacgt ggagacgcat ggttaaggag      1740
     ttaaagaatg agttcttacc cattgatatc gactacgtgt acgagcggca ggtgtacaat      1800
     cggaagcagg gtgctcggga gaaatttcac gatttctacc tggacatggc cagaattttc      1860
     cgcaacatgt ctcagcagtg ggacgaaaaa cggaaattcg actcgctttt ccgcaacacg      1920
     cgcgaagatt gccagatcgc tatgctcgcc gcaaatatcc aggacatagc tgcaatgaaa      1980
     gagtttggaa agaagttcga ctcgattaat tggcagttgt acaaacggaa ggagagtagg      2040
     ttcacacctc gtaccgcaca cgttgaagaa gtaggagaac tacgtagacc gtacggagga      2100
     aatggaaacg gaaataggtt ccagaacaac aaccaagatg gtagaggtta ctatcagcag      2160
     cagaaaccgc aggtgaaagg gtttcagaag gggaattgga atcaacgtcc acccaagcag      2220
     gaacaacaac agtatcagca gcgtaaccaa cagtatcatc agcagccgaa gaatcgtgag      2280
     cagagtcaaa gagaggagaa agctaaaccg aaacaggaca accagcaacg gtcgaagagt      2340
     ccagttcaag gtccaagcgg aactgaccca cttcaacgga tcgtgagagc gtacattccg      2400
     atcaagagag gagtgtgcta caattgccat gaagaaggtc acgggttcag cgaatgtccg      2460
     aagaatcgga acgtcttctg tgaacgttgt gggttccctg ggtttgatac gcgaacgtgc      2520
     ccgttctgcg agtcaaaaaa cttgcagcgg actgctcagt gaggcgagac agtcgcggtg      2580
     ctaactacac aagacctcac gatggatgcg aagcggtact cagtgaactt ggctattcga      2640
     gagtgagtgg agaagttacg aaggatgatg agattgcttc tttactcgtc acccttagta      2700
     acgaccccag gccattcgcg agagttgagt tcctgggtat taccgtcgta ggattgttag      2760
     atagcggagc agcaagaact gttcttggca aaggaggaga aaaattgatc cattcattag      2820
     gactgaaggt gagagagtca gcagtgtcat tgaagacagc tgcgggacag cagatgaacg      2880
     tcgtaggttg tgcagatgta ccaattacat tcaatgaaga gacgaagatc ttacctgttt      2940
     tgattgctcc agatctaaaa cgtcgttgta tcctaggata cgatttttgg cagaagtttg      3000
     gaatccgtcc gtcggttcac cagagtatcg agacgctcga cgagggtgac gaccagattc      3060
     tagaagagga gagattagat gagcatcaaa tacagcagtt ggaggaggtc aaaaagttgt      3120
     ttcttacagc gagtcctgga aatctcggca aaacggggct cattgagcac aaaatcgagc      3180
     tgaaggagga gtttcaagga gcggatccag tcaggaaaaa tccgtacccc tggagtccgg      3240
     agatccagcg tagaatacac cgtgccgtgg acttgttgct gagagatgac atcattgaac      3300
     cttcttcttc tgaatgggct ttacctgttg tacctgtgaa gaagcgagac agtgatgaag      3360
     tgcgactttg cctcgacgcg aggaagttga acgaacgtac gaagagagac gcatacccac      3420
     tcccacacca aaaccgaatt ttaagtcatt taggaccttt taaatatctg tccacaatag      3480
     atttgaccca agcttttcta caagtgccct tggaccagga gtcacggaaa tacaccgcgt      3540
     tttctgtgcc aggtatgggt ttatttcagt ttaaacgttt accgtttggc ctgattaaca      3600
     gcccggcgac tttgagtaag cttatggaca aagtattggg acaaggtgca ctagaaccgt      3660
     caatctttgt gtacctggac gatattgtgg tcgttagtca ggactatgac gatcatatag      3720
     caaaactacg agaccttgcg agacgcttaa aagatgcaaa tttatcaatc aacgttgaga      3780
     agtctagttt ttgctgccat gaattacctt acttgggtta tattctgtcc cgtaacggac      3840
     tgagacctaa tccggatcga gttagagcga ttcttggata tgaggtcccg aactcagtga      3900
     gatctctgag acgattcctc ggtatgatta attactaccg caggttcatc gagaacttca      3960
     gtgaactcac tgcaccactc acggatttac ttaaaaataa accgaagaga gtgcagtgga      4020
     atacggcagc gaacgaagct tttcaggcca tcaaggagag gcttatatct gcgcctgtga      4080
     tggccaaccc cgattttaat cttccattta ccgtccaaac ggacgcaagc gatacagctc      4140
     tcgcaggggt actcacgcaa gtgcaaggtg gagaggaacg ggtaattgcg taccattcgg      4200
     agaagttgaa gggggcagag cagaactatc acgcagctga gaaggaagga cttgccgctc      4260
     tgcggtgtat cgagaagttt cggtgctaca tcgaaggcac tcacttcaag ctcgtgacag      4320
     attcttcggc tctcaccttc atcatgagag cgaaatggaa gtcttcatcg cgactcagca      4380
     ggtggagcat catcctacaa cagtatgaca tggaggtcat tcataggaaa ggaaaggaca      4440
     acgtggtacc tgacgctctg tctcggtcca ttgaagtgtt ggacacggag gtcgaggaca      4500
     gttggtacaa acggttgtac gcatctgtgg aaagagaccc ggaaaagtac atggatttta      4560
     agatagaaaa caagaagctg tacaagctgg tgtcagctcg ctccgacgtc ctcgactaca      4620
     ggttcgagtg gaaggagtgc gttccggagt cgttacgtcc acaggtcatg agacaagagc      4680
     acgatggcaa gatgcacatc ggctatgaga agtgtgtcga caccctgaaa cgtcgatact      4740
     actggccgcg aatgagtgcc gatctcaaat cttacattgc taagtgtgag gcgtgtaaga      4800
     tgaacaagca ctcgacgacc gcttccgtac cagaaatggg aaagcaacgc gtagcgacca      4860
     gacctttcca gattgtgtgt atggattaca ttcagtcact tccccggagt aagcatggca      4920
     atgcacactt gttagtcata atggacatat tttctaagta ctgcctgctc attccggtta      4980
     agaagattgc tgctggtaat ttgtgcacca atctggaaaa ggaatggttc cgtcggtttg      5040
     cggttcctga gtacgtcatc acggacaacg cgacaacgtt tatgtccaag gagtttaagg      5100
     agttgttgga caagtatgga gttcagcact gggcgaacgc tcgacaccac agccaggcta      5160
     acccgacgga gaggttgaat cgtacgatca attcaatgat tcgtacctac gtccgtcaag      5220
     accagaagct gtgggatacc aggatatcag aaatcgagta cgtcttgaac aacaccgtcc      5280
     actcatcgac aaagttcacg cctcatcgga tcatattcgg tcacgagatc gtgtccaagg      5340
     gcgatgaaca tcgcttagag caggacgagg agttcagtga ggaggaacgg atgaacaaac      5400
     tccgcggagt gaccaagaag gtgtgggaaa cagtgcgtga gaacctcaaa aaggctcacg      5460
     agagtaccaa gaagcagtac gatttacgac acaaacggta ctcacctaca ttcgacatcg      5520
     gtcagcgggt cttcaaacgt tcattcaagc agtcatcggc gggggacaac ttcaacgcga      5580
     agttgggtcc accgtacacg ccgtgcatca ttacagcgaa gaaagggacc agctcgtatg      5640
     cagtctctga tatgaatggg aagccgctag gtgtcttctc agctgccgat ttgaaggcat      5700
     gaatggaagt agtcagatga gcagccagca tgacgattct gcgatgaacg aggagctttt      5760
     ccggcaacag catttggaaa tccgccgttc ggcgattaca gcgtcacagg gcagcataat      5820
     ttggtgcttc attcatggaa ttgcgcagca tagtttgatt cattcatggt aaacctaatt      5880
     ggttgtttta gaaaatttta atttgtttgt attgttgatt ttgggaaagc cccaaccaca      5940
     tgtggaaaat ttgttttgga aaataggagt tggagttaat tgtgtaggag tatcttcgat      6000
     acacatgcaa cagacgcagt ccttaacctt gaatgtgttg ttattacttc attgaacgat      6060
     acacaatggg aggggatgtt ggcttatgca tggtgtgtgt gcaaggtagt tgtcgatcga      6120
     tcttgatcaa cccatagtgc cataatttaa actttatttt catagaacgt tttcacatca      6180
     cagctgcaat agtatttcaa tttacttacc tttattttcg catttttcct cataaaattt      6240
     cagcatcaac aaaattttga cccaagataa ctttggaatt agtgatctac cgaggtaaat      6300
     cttattactg aagtgatcaa agggccctta atcatcgatc gattgatttt aaaacgataa      6360
     ttttacgccc ggtaagatca aaattcactt aattttctgg aatcacaaat tttgttgctg      6420
     cgaaccacgt ttgaccactg cacatttgat tagatcttga cagatcgatc ttgacagcac      6480
     gcacatgagt aaagaacgat aacgttatca gtaaagagaa gataaaaaga gaagatgaac      6540
     tccgacacgc gaaacgtttc aactgatcgt tacgggtata ttgattaccg taactgcgcg      6600
     cgcgtttgaa aatatttttt tatccggatt tttaatttat tttattcacg tattgtgatg      6660
     tatttttgaa tttgttttga attaattgca tgcctaaacg aaaaattata aaatcaactt      6720
     tgctgtacga atgggatcgc tggagaccgg agttgaatta aacgttgatg gtcagtagaa      6780
     ggttccgacc ttgaaacaga gaggagttga cttcggtcga cgatgaaaac ttatgacccc      6840
     gacccattca agcttagtta ccaaaaacaa tttagtagat tttgcatgcg agtagaaaga      6900
     aaatttcccg ggaaacaaaa aataaataaa tgtaatgtaa atattgtaaa taattttaac      6960
     ttgtaaatat tttgatttgt gtctcaccag cattggaagt agtacagtgt gattgtatcg      7020
     ctggaggcta gagttgttaa aacgttgaag gccagtacaa gcaattgctt cgaaacagca      7080
     cggagttggt ttagtccgac gatgaagtct tatgaccccg atcaagcccg cactgtatga      7140
     aatgtttcaa acccttggct catcaacatg acttagtaga atccaaaatg atttttataa      7200
     ataaagcaac ctaaagcaag taaaaaatga aaaggtgttt gctatttggt ctagttccag      7260
     ttttgggttc agagagacgt ggcagtttat tatatgcagg gtgtaaaaaa aacttgtaaa      7320
     ctcttcggag tttacaattt ttttaacccg agccggggga gagtgtaacc ag              7372
//
ID   Gypsy-81_CQ-LTR repbase;    DNA;    INV; 1289 BP.
XX
AC   AAWU01003442;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-81_CQ_;
KW   Gypsy-81_CQ-I; Gypsy-81_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1289
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 542-542 (2011).
XX
DR   Genome; AAWU01003442; Positions    3200    4488.
XX
SQ   Sequence 1289 BP; 313 A; 308 C; 390 G; 278 T; 0 other;
     tgtgagtgtt gtgtacaata attgatgtga ctcgtcgcga attttgtgtt aaattattta        60
     aatgtaaatt attgtgccaa gaagacgttg tgtttgtcga cgggaagtta ccaggacgcc       120
     gtccagcaag caagaaaccc gaagctggaa gtcccacacc gtgcgtcgtt accgctagtc       180
     accaccagga gcgctgctgc ataacatcgc atgggcggcc attgggggtg gtgaatgtgc       240
     gtaatccttg aggatgacag gatgaggagg agatgggttg gcgcgtaaga ggtcaggggt       300
     tcgggatttt ggtctgaccg ttgctcagtc attaagtccg gatatcgaga agtggaaggt       360
     tgtcggcaag tgcaaccgtt acccgcgaag accagtgttg gaaaagttaa tccttggagg       420
     atcgtgaagt gctcggaaga gctacatccg tggccgtgac aagagagcag gagtttcccg       480
     taggagattt ggacatccag gtatgaccgg aaaaccccag gaaaatcccc gaacaaaccc       540
     ctagcctgac aataccctaa ccgccatttt gaatccctca tccaggaccc ctttgtgttc       600
     ctttgtgttc ctttgttcac ttcgtgaaca ccgcttggtt tcaccccggc cgtacgacat       660
     ccggcccggt gaaccatctg tacgagccgt cagcgtttcg ctggacagtg ctcaaccgcc       720
     aggccgttac cgttataccc gcgaacccta accccggact gttccgacgg agtccccgga       780
     caccgtcgaa gcctgttgca cgtcaccaag cacaggaagg gcgcgaacgg ctggcgaggg       840
     tccgtgaagg ctgcagccga aacgtcggag ggtccatccg actgacgaag aagccacccc       900
     cttggcagag cgccggagga gcgtcgacga cagcaggaag gagcagcgac gacggcagag       960
     cggcgagaac ggggccccga acgcgtgcac cggaagtgcg aagagaggaa gaggacgtgt      1020
     gaggtaggag tatttataag gaagtgggac gggacgtgtg agctagtgga agtttggaag      1080
     ggattcccgg aataaatcgt cgactgtgca cgaaataaaa gtagtttccc ttaggtaaat      1140
     gcagtgtttt cttggttctt gagtaatttc gagcgtcacg ccgaccctgg gtattataag      1200
     ggagagtctc atcggttttg tacgccctga caccggaagc acatctctta gagtgtgtgt      1260
     tcacttcgag tatggactgg gagtgaaca                                        1289
//
ID   Gypsy-81_DEl-LTR repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   24-JUN-2021 (Rel. 26.12, Created)
DT   24-JUN-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-81_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-518
RA   Bao W.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(12), 7045-7045 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 518 BP; 174 A; 114 C; 97 G; 129 T; 4 other;
     tgtagtatgc acatatatcg agcacccact gtaccaagag tactaaaagg gaacacactg        60
     taacactttg ttgcagtgtt tacataattc aaagtcccgg tcataaaccc aaggccgaaa       120
     tacgaaccga tcgctatgcc ttggccgcac acagaaagtg caagtgtcag cataactgta       180
     tcacgagcgg acttcatgtg cgtatgtkca tatacctccg cgctccwgcc taagtgagca       240
     tagctattta tttaagaata tataaccgtc tctccgctgc ctctgttggc agcgcagcta       300
     cgagactcag agctctttag cttctaagta aatttgtaaa acaagaagga actcctgaga       360
     gctggaagcg gcaactacag ccgctccagt taaataagcc gaaaatcaat taaacttaaa       420
     wgtggtmttt ttcttaaatt aaatgggatt acaaaaatta atcaatacat ggcgaccgtg       480
     aaattactac ttggaaaaaa cttaaataaa acaataca                               518
//
ID   Gypsy-81_LMi-I repbase;    DNA;    INV; 4491 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-81_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4491
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(468..1130,980..2068,1825..4455)
FT                 /product="Gypsy-81_LMi-I_1p"
FT                 /translation="MCQLLSSYYCKRTHVVAARVEFYRCRKQPHQSYRAWA
FT                 AELHGLSRRCNFVSEVHKESYADQMVRDVIIRLAPDREVRERTLQHENPSL
FT                 SEVLKIAQAFEVSRTAGNQIEAWCDVSAVQPSPSRHPQEDEPPEEDIAAVT
FT                 QRSVRSSGRRPMQQQKPRARGPQQQTTQGRSSAPLPSCPSCFVSHDRSACP
FT                 RRWATCHRCSKKGHISSVCKSNPPCGIRIWMCPLALLPFLLCQSRSVRLPS
FT                 ALGHVPSVQQKRSYFVRVQVKSPVRDQDMDVDTEVNCVAALSAGPSKLFLD
FT                 LKVCNKVLRMQVDTGAAVTLLNSQTYVELGSPPLQPVTRKLLSYNKQRIPV
FT                 LGQFTAQAAYRTVIRPLTFLVVDNATTENLFGMDAFQLFGFSISDDVNLVS
FT                 NEVPYPQLDELCSEFSSLFTPGLGCATSFQAHISMKPSARPRFFRARQIPV
FT                 ALRDSVKAELDRLTSLGVIRPISSSEWSSPLVIVIKPTGKLRLCGDFKTTI
FT                 NAQSVIDTYPLPRQEELLTKLSGGHFFRRWIWQRPIFSFPWTRSHSVCWWL
FT                 IHHLAYTSIYAYRLGLPAPQPYSNGSWNSSQRRFRAVHLSIASPGGIAHQV
FT                 VRRTFFSKVDLAEAYLQLPLDEESQRLLVVNTPFGLYQYLRLPFGVASAPA
FT                 IFQRFLEQLTAPIPGCINYLDDIVVSGTSAEDHLRNLRSLFSALQAAGLKC
FT                 NLDKCSFFQPAIVYLGFEVSREGVTPLRQHVTAISALPRPTSVQELQVFLG
FT                 KIAYYHKFLPDAASIAQPLHALLHKGVRFQWSQACENAFSLLKQKLQSAPC
FT                 LVPFQPGQQLVLATDASQHGVGAVLAHRYEDGTERPIAYASKTLNSAQLKY
FT                 SQIEKEALAIIYALHKFYVFLYGTKFHLITDHKPLISLFNPSASLPDKAAH
FT                 RLQRWALFLSRFNYEIHFRPTAQHANADALSRLPVGPDPVFDSDELLCFHL
FT                 DAVEQQVVDGFPLTASRIAAAVTADPVLRQVVSFVQHGWPERPPGRVSDPL
FT                 RNYFSFRYQFSVRDGVLLLSTAGAPPRVVIPSSLRREVLRLLHADHWGMSR
FT                 TKALARRHVFWPGLDGDIVRLVSACSKCATHQAAPRASLSPWPDPEQAWER
FT                 VHVDFAGPFLNSFWLLVVDAFSKFPYVVRCTSMSTAVTVSALSKIFALEGL
FT                 PITLVTDNGPQFSSQEFAEFCARRGIRHVLAPPFHPQSNGEVEHLVRTFKT
FT                 QMKKYIVQSSPDMALERFLASYRFTPIGDKSPAELLHGRQPRTLLHLLRPL
FT                 PGHLRAAAPARFHPGTAVWARGFGRRPKWIPAVVTRCSGRRLCEVCTEDGL
FT                 TSRHVDQLHPRVAGREWEDVPTHPGFARHLTRPSTKPSLLPADTPRHPGSG
FT                 VQQHLRLGRRQPLPWYRLHIHRRRHRLCRHRCSQLRRLWHRARVTTASWTT
FT                 THLLRSYLTGHQRAGLAVLHGALSLHARTPWFRLGALAMRTKWMCHV"
XX
SQ   Sequence 4491 BP; 896 A; 1319 C; 1139 G; 1137 T; 0 other;
     ctcattggcg acgagtgtgt tcgattccac gcgttctgtt ttcacctagg ttcaatagag        60
     gccttttgaa atgacggaag ctacactcga cgaagtccta cgccgcctcg ttgatcaaca       120
     gacggccttg agcgttgcaa aaccagactc aggtcttcgc aacagctttg gagaatctta       180
     cccaggtatt tcagtcttcg gcttcggcgc tgtccgcgca cgcgcgtccc gcagtgccgg       240
     ccgcgtctac ccctgtctca tacccgccgc cttttcctgc atttgacgag gccgcggaag       300
     agtgggagtc ttacgaaaag catctgcggc aacattttca ggcttttgac gtccgggatg       360
     cccggctgtg ccgcgccctt tttctttcat ggatttctcc taagatttat catttgttgt       420
     gtcaactggc ccccctgcag gaccccacgt ctcttacttt cgatcagatg tgtcaattac       480
     tgtcttctta ctactgcaag cgtactcatg tcgtagctgc tcgagtggag ttttatagat       540
     gccgtaaaca accgcaccag tcatatcggg cgtgggcggc cgaattacac ggtcttagtc       600
     gccgttgcaa ttttgtttcg gaggtgcaca aggagtctta tgcagatcag atggtcaggg       660
     atgtgattat tcgcctggcg cccgacaggg aagtgaggga gcgcacctta caacacgaaa       720
     acccttcgtt gtcagaggtc ttaaaaattg cccaagcttt cgaagtgtcg aggacggcag       780
     gaaatcaaat cgaggcttgg tgtgacgtat cggctgttca gccttccccc tctcgccacc       840
     cgcaggaaga cgagccccct gaggaggaca ttgccgcggt tacccaacgc tctgtacggt       900
     cgagcggtag gcgtcctatg caacagcaga agccgcgggc gcgcggcccg caacaacaga       960
     cgacacaggg ccgctctagt gcccccttgc cctcctgccc ttcttgcttt gtcagtcacg      1020
     atcggtccgc ttgccctcgg cgctgggcca cgtgccatcg gtgcagcaaa aaaggtcata      1080
     tttcgtccgt gtgcaagtca aatcccccgt gcgggatcag gatatggatg tagatacgga      1140
     ggtcaactgt gtggcggcac tgtccgcggg tccttctaaa cttttcctgg acctaaaagt      1200
     ttgcaacaag gtcctccgta tgcaggttga tacgggcgca gccgttactc tgttaaactc      1260
     acaaacgtat gtcgagttgg gctcccctcc cctgcagcca gtcactcgca agttgctcag      1320
     ttataacaaa caacggattc cagtgcttgg ccaatttacc gctcaggcgg cataccgcac      1380
     tgtcattcgc cccttaacct ttcttgtagt ggacaatgca accacagaga atctttttgg      1440
     tatggacgca tttcagttgt tcgggttttc tatttcggac gatgtcaacc tagtctcgaa      1500
     cgaggtaccc tacccacaac tggacgagct ctgctcggaa ttttcttctc tgtttacacc      1560
     gggtttgggt tgcgccacgt cttttcaggc acacatatct atgaaacctt ccgcgcgccc      1620
     gcgttttttt cgggcgcgcc agataccggt ggccctccgc gattctgtca aagcggaatt      1680
     agatcgcctc acatccctgg gggtcattcg tcctatttcc tcgagtgagt ggtcttctcc      1740
     tttggtcatc gtaataaagc caactggcaa gttgcggctc tgtggcgatt ttaagaccac      1800
     aatcaatgca cagtcagtca ttgacactta tccattgcct cgccaggagg aattgctcac      1860
     caagttgtca ggaggacatt tttttcgaag gtggatttgg cagaggccta tcttcagctt      1920
     cccttggacg aggagtcaca gcgtttgttg gtggttaata caccatttgg cctataccag      1980
     tatttacgcc taccgtttgg ggttgccagc gccccagcca tattccaacg gttcctggaa      2040
     cagctcacag cgccgattcc gggctgtata aattatctgg acgacatcgt ggtgtcgggc      2100
     acgtctgccg aagaccactt gcggaaccta cggtcccttt tttcggcact ccaggccgct      2160
     ggactcaaat gcaatctaga caagtgcagc ttcttccaac ccgctattgt ctatctaggt      2220
     tttgaagttt cacgcgaggg tgtcacccct ttacgccagc atgtcacggc catttcggcc      2280
     ttacctcgcc ctacgtcagt gcaggagtta caggtttttc tcggcaagat tgcatattac      2340
     cacaaatttc ttcccgatgc ggcatccata gcacaaccat tacatgccct tttgcacaaa      2400
     ggcgtgcgtt tccagtggtc gcaggcgtgt gaaaatgcgt tttctctttt gaaacaaaag      2460
     ttacagtctg ccccctgttt ggtccccttc cagcccgggc aacaattagt tttggccaca      2520
     gatgcgtccc aacatggggt gggagcagtc ttggcccata ggtacgaaga cggtactgag      2580
     aggcccattg cttatgcgtc gaaaacattg aactcggcac aactcaaata ttcgcagata      2640
     gaaaaagagg cccttgccat catctatgca ttgcacaaat tctacgtttt tctgtatggc      2700
     acaaaattcc atttgatcac agatcataaa cccttgattt ccctgttcaa cccttccgca      2760
     tccctgccgg ataaagcagc acaccgcctt cagcgatggg ccctgttttt gtcgcggttc      2820
     aactatgaaa tccattttcg ccccacggcc caacatgcta atgccgacgc gctgtctcgt      2880
     cttccagtgg gtcccgaccc tgtttttgac agtgacgaat tgctctgttt tcatctggat      2940
     gcggtggaac aacaggtagt ggatggtttt cctcttaccg catcacgtat tgcagccgcg      3000
     gtcacagccg atcccgtgtt aagacaggtg gtctcttttg tacaacacgg ctggccggag      3060
     aggcctccgg gccgtgtttc agacccactt cgcaattact tttcctttcg gtatcagttt      3120
     tcggtcaggg atggagtcct cttactgtcc acggcaggcg caccacctcg ggtggtcatt      3180
     ccctcctctc tacgtcgcga ggtcctccgt cttctgcatg cggaccactg gggtatgtcc      3240
     cgtacaaaag cattagcccg ccgccatgtg ttctggccag gcctggacgg ggatattgtc      3300
     agacttgtgt ctgcctgctc gaaatgtgcg actcaccagg ctgctccgcg cgcgtccctt      3360
     tcaccgtggc cagatccgga acaggcttgg gaacgagttc atgtagactt tgcgggtcct      3420
     ttcttgaatt ccttctggct attggtggtt gacgcatttt caaagtttcc atacgtggta      3480
     cgttgcactt ctatgtcaac agcagtaacg gtttcagcgt tatctaagat ctttgctctc      3540
     gaaggcctgc ctatcacttt agttactgat aatggcccac agttttcttc tcaagaattt      3600
     gccgaattct gtgcccggcg aggtatccgt cacgtgttgg cgcccccttt tcacccccaa      3660
     tctaacgggg aggtcgaaca tcttgtcaga acgtttaaga cccaaatgaa gaagtacata      3720
     gttcaatctt cacccgacat ggcattagag agattcctgg cttcctaccg ttttacgcca      3780
     atcggtgata agagcccagc agaactctta cacggccgac agcctcggac gctgcttcac      3840
     ctgctgcggc ccctgccggg ccacctccgc gcggcggcgc cggcccgttt ccatccgggc      3900
     actgcggtgt gggcccgcgg gttcggccgc cgccccaaat ggatcccagc ggttgtcacg      3960
     cgctgttctg gccgccgtct ctgtgaggtc tgcacggagg acggcctcac atctcgacat      4020
     gtggatcaac tgcatcctag ggtggcaggt cgggagtggg aggacgtccc gacacacccc      4080
     gggttcgccc gtcacctgac gaggccgagc accaaaccca gcctcctccc ggccgacact      4140
     ccacggcatc cggggagcgg ggtccagcaa cacctacgac ttggccggcg tcagcccctc      4200
     ccgtggtacc ggctccacat ccatcgccgc cgtcaccgcc tctgccgcca tcgctgctcg      4260
     cagttacgcc gcctatggca ccgggcgaga gtgacgacag cgtcatggac tacgacccac      4320
     cttctccggt catatctcac tggccaccaa cgggcagggc tcgctgtgtt gcacggcgct      4380
     ctcagtctgc acgcccgtac tccttggttc cggctcggcg ctttggccat gaggacgaaa      4440
     tggatgtgtc atgtgtaaga gtttagtttt tctccgcaga agagggagat g               4491
//
ID   Gypsy-81_LMi-LTR repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-81_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-255
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 255 BP; 62 A; 59 C; 73 G; 61 T; 0 other;
     tgctgtagcg tagtgcgcac acgtaattct aatcgagcgc gccgactatg tacttgcagt        60
     gcccgccacc agaggcgcgc gagactagag acaagcagcg cgccctctat gaacgaagcg       120
     gatgtagcgc ggagtcgcgc aggcagttgt gtagtgaatg ccaaacgtta tgttgttatg       180
     ttcagttctg tacttaacgg ccgacgcggg ccatttatgt tagactttat atgataaagt       240
     tcggaggtta caaca                                                        255
//
ID   Gypsy-82_AA-I repbase;    DNA;    INV; 4458 BP.
XX
AC   supercont1.148;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-82_AA_;
KW   Gypsy-82_AA-LTR; Gypsy-82_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4458
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.148; Positions 1978855 1983312.
XX
CC   Positions [3374-3892] - Integrase core
CC   'GTTGC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..4426
FT                 /product="Gypsy-82_AA-I_1p"
FT                 /translation="MAEEIAQLLKQQNQIFAYWAERMGNFQITIPNPASPA
FT                 HMTSQSVPLPPPLCLEGDMEENFTFFESNWKNYAVAVGMNDWPETENKKKV
FT                 SFLLSVVGTDALKRYFNFELSEQQKSSPEAVLEAIRNKVVPVRNIIVDRLE
FT                 FFSAIQIPTETIDEYVSRLKVLGKPCRFGPLEQDMMVFKIVTSNKWSSLKA
FT                 KMLTMPDVNLTKAIDLCRMEEITARHSKQLSLEPPVEVNKVTDQVCKFCGG
FT                 RHPFQRGSCPAFGKRCDKCGGRNHFQKDCKSSGSFGRPKQGRRVNAVTTSE
FT                 ARSIRAADDDEEREIWIQEEEETVIGKIMDNSATGGAVLAELSLKFGNVWK
FT                 NVCCELDTGARASIIGIDWLKKLSGEVDPELKASKCRLRAFNGTSIEVLGK
FT                 IEVQCQHKGRRYTMVFQVVNINHPPLLSVAVCTTLGLVNFCNTVRRDSAAY
FT                 QVLDKYQEEARNIVRNYQDVFEGYGKMEGTVRLEIDKTVKPVIQTPRRIPI
FT                 GFREDLRRKLDQLVQDGIIQKESQHTDWVSNLVIVKKNTPGSDSLRLCLDP
FT                 IPLNKALKRPNLQFTTLDEILPELGKAMIFSTVDTRKGFWQVVLDEASSKL
FT                 TTFWTPFGRYRWLRMPFGISSAPEIFQAKLQEALQGLEGIECLADDILIIG
FT                 TGDNFEEALACHNQRLENLLIRLRSNGVKLNITKLNLCQTSVNFFGHVLTS
FT                 EGLKPDMRKIEAIQNYPAPTSPKEVHRFVGMANYLARYIPNLSSKLVSLRK
FT                 LIPENATWRWTSEEKTEFDNVRQSISEHTALQYYNRTEPLLIECDASCQGL
FT                 GVAVYQQKGVVGYASRTLTKTEKGYAQIEKELLAIVFACTRFDQLIVGNPK
FT                 VIIKTDHKPLLNIFEKPLLTAPKRLQHMLLALQRYNLVLQFVKGKDNVVAD
FT                 AISRAPSDSDSNGIMAKQHVYKILAGVEEVQLQNCLNISSERISEIIRHTA
FT                 NDEGLQCVTEYIRRGWPKSIDGVPCHAKMYFKYRDELATQDGLVFRNEKIV
FT                 IPPILWRSMIGRVHIAHSGVEGTLKLARANIFWPGMSNHIKHTISLCATCA
FT                 KFSASQCKPPMQTHPVPVHPFQFISMDVLTVPYKGKARYFLVTVDHFSDFF
FT                 ELDLLPDLTMHTMVDVCKKNFSRHGKPQRILTDNGSNFVNSEMARFTKEWD
FT                 IEHVTSSPYHQQANGKAESSVKIAKKLIKKAEDSKQDLWLMLLNWRNTPNK
FT                 LGSSPVCRLFSRSTRCEVPMSATNLMPRIVQNVPEAIQDNKRKVKYQYDKS
FT                 TRRLPSLEVGDPVFVQLNPDVSKTWVPAEIKNKLSERSYLVERNGTTYRRD
FT                 VVHVKPRNVGGSSFPIAESNPHEEPTPNVSLQLSSSLPSAETPGDAWRNTA
FT                 LLETQSVDQSSKQAPAIAVHSPNRKHLGTPVTKMTPQPERMNKPKREVKMP
FT                 TKFKDYVMS"
XX
SQ   Sequence 4458 BP; 1340 A; 930 C; 1076 G; 1112 T; 0 other;
     tggtgtcaga agtggagaaa tctgcctaat aaaagttaat tgagcagatt tgcgatcaat        60
     ataatcgata aatcgtcggt tgttcgagtt tttcgtagtt gcggcgcgaa atacgtatat       120
     aaatatcgcg gtcgaaagca ttgcaagcct catcaaaatg gcggaagaaa ttgcgcagct       180
     gctaaagcag caaaatcaga ttttcgccta ttgggcggaa cgaatgggaa atttccagat       240
     aaccatcccg aatccagcgt caccagcaca tatgacttcc caatcagtgc cgttaccacc       300
     accactttgc ttggaaggag atatggagga gaactttact ttcttcgaat ccaattggaa       360
     aaattatgca gtcgctgtcg gcatgaacga ctggcctgaa accgaaaata agaagaaagt       420
     cagttttttg ttgtcagtcg ttggaacgga tgcactgaag cgttacttca atttcgagtt       480
     aagtgagcag cagaaatcgt ctccggaagc tgtattagaa gcaatcagga acaaggtagt       540
     gccagttcga aatattattg ttgaccggct ggagtttttc tctgcgatcc agattccgac       600
     agaaacaatc gacgaatacg tgagtcgttt gaaggtgctg ggaaaaccgt gtcgatttgg       660
     tccattggag caggatatga tggtgtttaa aatagtgacg tcgaacaagt ggtctagttt       720
     gaaagcgaaa atgttgacca tgccagatgt gaacctgacg aaagccatcg acctttgcag       780
     gatggaagaa attacagcac gacattcaaa gcagctgtct ttggaaccgc cggtggaagt       840
     caacaaggtt accgatcaag tttgcaagtt ttgtggtggc agacatcctt tccaacgagg       900
     atcgtgcccg gcctttggaa aacgttgtga taagtgtggt ggcaggaatc atttccaaaa       960
     ggactgtaaa tcgagtggat catttggaag gccgaagcaa ggtagaagag tgaatgcggt      1020
     aacaacatcg gaagcgaggt ctatccgggc tgctgatgac gatgaagaac gagagatctg      1080
     gatccaagaa gaagaagaaa ctgtgattgg gaaaattatg gataattctg ccacaggagg      1140
     tgcggttttg gctgaactct cactgaagtt tggaaacgtg tggaaaaatg tttgctgtga      1200
     gctggatact ggtgcccgcg ctagtataat cggaattgac tggctgaaaa aattgtcagg      1260
     agaagttgat ccagagttga aagcttccaa gtgccgtttg cgagccttca acggcacctc      1320
     gatcgaagtc ctgggaaaaa ttgaagtgca gtgtcagcat aagggccggc gatacacgat      1380
     ggtattccag gtggtgaaca taaatcatcc accgctgcta tcagtggcag tttgtaccac      1440
     ccttggcctg gtcaattttt gcaacaccgt tcgtcgtgat tcagctgcgt atcaagtgct      1500
     agacaagtac caagaagaag ccagaaacat cgtgcgaaac tatcaggatg tatttgaagg      1560
     atatgggaaa atggaaggca ccgtcaggtt agaaattgac aaaaccgtga agccagtgat      1620
     tcagacaccc cgtcgcattc caattggctt cagagaggat ctccgacgaa agttagatca      1680
     gctggttcag gacggaatca ttcagaagga gtcccaacac accgactggg tgagtaactt      1740
     agttatagtg aagaaaaata cccctgggtc ggactctctt cgcttgtgtc tggatcccat      1800
     tcctctaaat aaagccctaa agcgtccaaa ccttcagttt acaacattgg atgaaatatt      1860
     accagaactc ggaaaagcaa tgatattttc aacggttgac accagaaagg gcttctggca      1920
     ggtagtatta gatgaagcca gtagtaagct tactactttt tggaccccat tcgggcgcta      1980
     ccggtggctc agaatgcctt ttggtatctc ctcagcgccg gaaatattcc aggcaaaatt      2040
     gcaagaagcg ctacagggac ttgaaggtat tgaatgtttg gcggacgata ttttaataat      2100
     cggaacaggg gataactttg aagaagcctt ggcatgtcat aaccaaagat tggaaaatct      2160
     gttgatacgt cttcgaagta atggtgtgaa actcaacatt acaaaactta atttgtgcca      2220
     aacgtccgtc aacttctttg gtcatgtcct tacctccgaa ggactgaaac ctgatatgcg      2280
     gaaaattgaa gccatacaaa actaccctgc gccaacgtca cctaaagaag ttcacagatt      2340
     tgtgggcatg gctaattacc ttgcgaggta tattcctaat ttgagcagta aacttgtttc      2400
     tctgaggaag ctcattcctg aaaatgcaac ttggcgctgg acttctgagg agaagaccga      2460
     gttcgataac gtaagacagt ctatttccga gcacactgca ttgcaatatt ataaccgtac      2520
     cgaaccgttg ttaatagaat gcgatgccag ctgccaaggg ttgggtgtag ccgtatacca      2580
     gcaaaagggc gtcgtcggat atgcttctcg aacgctcacc aaaactgaaa agggttacgc      2640
     tcaaatagag aaagaattgc tggcgatagt atttgcctgt acacgctttg atcagttgat      2700
     cgttggtaac cccaaggtca ttatcaaaac tgatcacaaa ccgctattga acatttttga      2760
     aaaacctctg ctcaccgcac caaagcgctt gcaacacatg ctgctggcct tgcagcggta      2820
     taatttggtt ctgcaatttg tcaaaggcaa ggacaatgta gtggccgatg ccatatcaag      2880
     agcacctagc gactctgaca gcaatggtat catggcaaag cagcatgtgt acaaaattct      2940
     tgctggggtt gaagaagtac aactgcaaaa ttgccttaac atctccagcg aacgaatttc      3000
     tgaaattatc cgccatactg ctaacgatga aggacttcag tgtgtgaccg agtatattcg      3060
     cagaggatgg ccgaaatcca ttgatggggt gccttgtcat gctaaaatgt atttcaagta      3120
     tagagatgag ttggcgaccc aagacgggtt ggtattccga aatgaaaaga tagttattcc      3180
     tccaatattg tggcgttcca tgattggccg agttcacatc gctcattctg gtgtagaagg      3240
     aacgctcaag ttggcacgag caaacatatt ttggcctgga atgtcgaatc acatcaagca      3300
     caccatctcg ctttgtgcca cttgtgccaa attttctgca tcccaatgca agccacctat      3360
     gcaaacgcac cctgtccctg tgcatccatt ccagtttata tcaatggatg tattgacggt      3420
     tccatacaag ggcaaggcaa gatattttct tgtaacggta gatcactttt ccgatttttt      3480
     tgaactggat ttgctaccag atcttacgat gcacacaatg gtggatgttt gcaagaagaa      3540
     tttttcgcgg catggaaaac cacaacggat tttgaccgat aatgggagca atttcgtcaa      3600
     cagtgagatg gcacgattta ccaaagaatg ggacattgag catgtgacat cctcgccgta      3660
     ccaccaacaa gcgaacggga aggccgaatc ttctgtaaag atagcaaaaa agcttattaa      3720
     gaaggctgaa gattcgaagc aggacttatg gctgatgctg ctgaactgga gaaacacacc      3780
     gaacaagctt ggatccagcc cggtatgcag gttattctct cggagcacga ggtgtgaggt      3840
     tcccatgtct gccacgaacc ttatgccaag aatcgttcag aatgtaccag aagctatcca      3900
     ggataataaa aggaaggtga agtaccagta cgacaagtca actcgccgac tcccttctct      3960
     tgaggttggt gatcctgtat tcgttcaact aaatccggat gtctctaaaa cttgggtgcc      4020
     agctgaaatt aagaataagc tcagtgaacg ctcgtatttg gtagaaagaa acgggacgac      4080
     gtataggagg gatgtggtac acgtaaaacc gaggaatgtt gggggttcta gttttcctat      4140
     cgctgaatcg aatccgcatg aagaaccaac accaaatgtt tctctgcaat tatcatcttc      4200
     attaccctcc gcagaaacac ctggcgatgc ttggaggaac acagccttgc tagagacaca      4260
     atcagtcgac caaagttcca agcaagcacc agcaattgcc gttcattcac cgaaccgaaa      4320
     acatttaggg acacctgtca cgaaaatgac accacaaccc gagaggatga acaaaccaaa      4380
     gagagaagtt aaaatgccta ctaagttcaa agattacgtt atgagttaat tacttttctt      4440
     tgtttgaaaa agggaaga                                                    4458
//
ID   Gypsy-82_AA-LTR repbase;    DNA;    INV; 151 BP.
XX
AC   supercont1.148;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-82_AA_;
KW   Gypsy-82_AA-I; Gypsy-82_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-151
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.148; Positions 1978704 1978854.
XX
SQ   Sequence 151 BP; 43 A; 26 C; 29 G; 53 T; 0 other;
     tgttgtaatc ttgtaatcga tgtaatttta cttcggtaag ccccttaact acatgtaagc        60
     aaagcgttat tattggaccc cttgaataaa gttagttgaa gatttctagc gtaacagagc       120
     acgcgtgttt tatttctggt ataccgaatc a                                      151
//
ID   Gypsy-82_CQ-I repbase;    DNA;    INV; 7750 BP.
XX
AC   AAWU01003460;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-82_CQ_;
KW   Gypsy-82_CQ-LTR; Gypsy-82_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7750
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 543-543 (2011).
XX
DR   Genome; AAWU01003460; Positions    8138     389.
XX
CC   Positions [4701-5180] - Integrase core
CC   'CATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2223..5540
FT                 /product="Gypsy-82_CQ-I_2p"
FT                 /translation="MLKAKNYVLIPARMEKFQKIFVPANEDILCHSGQIVE
FT                 NVFIGNCIVTPINNFVTIPILNSSEEDILVDLNQLEFEPLSHFQILNLTNK
FT                 NERCKTIIDNINMEHLNSEESDSITNIINEYNDVFYVEGDKLSATNATTHR
FT                 ITTNNGDKPIFTRQYRIPTIHKDVIEKEVQTMLKDGLIKESNSPWNSPLLV
FT                 VPKKQDKDGNKRWRMVVDFRKINDATISDAYPLPLISDILDQLGRARYFSN
FT                 LDLASGFHQILMDPKDSAKTAFSTTYGHYEFLRMPFGLKNAPATLQRFMNT
FT                 ILCGLQGVKCFIYMDDIVVYGDTLKSHNTKLIDVLKRLRQHNLKLQPNKCN
FT                 FLQKEILFLGHKITPDGIKPDEGKIEAVQKFPPPQNQKEIKTFLGMISYYR
FT                 KFIPNLSNLAEPINRLLKKGIQFIWSDKCQQSFNELKSLLTSAPILQYPDF
FT                 TKPFVITTDASNVAIGAVLSNEDKNLPIAYASRILNPAERRYSTIERELLA
FT                 IVWAIKHFKPYVYGREFFVHSDHKPLVYLFNVTHASDRLMRWRLLLEEYDF
FT                 KVIYKPGKNNAVADALSRIQLLTLDDRHEIVKEIGQQITNQKIEKLNVVTR
FT                 HQANKNNAMIANDFKTFELLTNPSLNQNVLQRTESGSKHLKVFVLPSILDA
FT                 KIDYSFNKNEFETAKIEDVGYVDSIESYFVISKNNHLDKICKHKLYKKLTF
FT                 LKNQMKNINKKTISFCFILSSCDEINWNLFQNIVQHIFSDVNCKIHFSNNL
FT                 VQKVSSKNEIEQILKLYHDSPLGGHEGVERTFKRISEKYKWPKMRQDIKNY
FT                 IEKCDLCQRNKILKVNKIPLKITTTAEKPFEKIFLDIVGPLPKTKNGNNYI
FT                 LTIQDDLTKTFIAKAIPEASAETTCKAFMEIGICVYGVPKTLVTDRGTNFT
FT                 SKLFEHLCKLLRVEQVQTSAYHPQSNGALERCHRTLKEYLRSYVCENLNDW
FT                 DDYLSQFCFTYNTSAHSSTGYSPYELMFGHKAELPVAIRTAQKENTNYFCY
FT                 LKDLRFKLESIHKLAKDSLIKTKESRKETYDTKSNEWVPMWGDKVLLMNIT
FT                 IGSGQKLQGIWNGPHEVVAIKSPETTQIRLKPSNKITTVHNNRLKLYKE"
FT   CDS           5575..7464
FT                 /product="Gypsy-82_CQ-I_1p"
FT                 /translation="MIIPLFLINLIQLALTTSPVEVSPLYNHGIIYEKLPD
FT                 VKLELGKYNLQSFHDLSSIAEEINQLEKLTPVLNNSCTKLATSFGIDCIRI
FT                 VNDVSFVMTDIINAREIFSDSCNNKRSKRQINFVGHIFKEITGVMDHDDSA
FT                 RIDTDLKNLHENEMILKNQLNKKTIAIDSIFEENNKTIYSMQNKLTEFSKI
FT                 IDHYNNKNSDERTKNLVRNEFSFILTELNFGLSHLRRKINLFQTLMETGKV
FT                 PLTPSIYSPSRFYDDLLKINEKLPYGFSMPFELKLQNIMKYYAISEVTSVL
FT                 HDCKIYVNIQFSISNHVLYEAYKGTSVPIMKNGKMFITTFEKEVILKSPNS
FT                 KIGMLATYAEYKTCKIVQNLRICPSFHILEDLSKLTDCNVQAFFNTSSNSC
FT                 FSQPINLKHQIWVQMVDENSWVFAVPNITQLDVLFNNKHMSYEISGIGKLK
FT                 ILQPALIKSQEVLLHYYPKDFTKIQYNNFKMSFSHTPLEVKLIDKKVPDTL
FT                 ETKIITNANSKQLFHEIVNLKNMNQDKMQLLNVELERHTFSFWTFFMYVIL
FT                 AVLFLFTLFRIYTYCKSKFSRGRGSRCRTQEEEINSQEIQELNPRINTNML
FT                 LPSSAYIVELDNNKMNSKKNVRKKPVYMNINV"
XX
SQ   Sequence 7750 BP; 2961 A; 1257 C; 1217 G; 2315 T; 0 other;
     ttggtggcag caaaaagaac acacgccgta aagtcaaagc gtgaagtgaa gtaaattcgt        60
     gaaaaaagtg aagttatttg cgcatctaaa gtagatgtac atatgtcggc cctattacaa       120
     agtgaagcga tttacaaatc tctatgcaaa gctcgacagt cattgaaagt ttgctgtaat       180
     caaaacgtct gtgcaaagtg aattacagtg caaaatagaa ataataataa taacagcaaa       240
     gtggatccag gaacaaaatc ctgaatttat gcctgacgcc aaaaggattt tttttccgtg       300
     ttgttaacgt aaaaataaaa tcgtcgtttt ccgaaacaat ttgacaccgc gcaattttgc       360
     caaaaacgtg atcgataata ataagttagt gcaaattcca agtggaaaac acgaaacact       420
     atgacagttt ttcaaatctt ctgttaagga aaattaagtg tcatcagtgt cgtttacaat       480
     cataaaaaaa gtgctgaatg caaattagct gaaaatccgt acagaaggaa agtcatcaaa       540
     catcgaagtc atcgattcca gcatcatcga cagcagcagc agcagcagca ggagctctgc       600
     cttcctgtga cagcagatca cgtcaaaatc atcgattcca gcaacattaa cagcagcagc       660
     agcaggagct ctgtcttcct gtgattcaac agcagaattc gtcaaggtta gcaagcaaca       720
     ggttagtgtt acatgttaac cagaagtaag gcagtagcgc ttaacgcttc cttactgact       780
     gaagacaata gtccggcacc gagtgtttcg gatcattctt ctcaagattc aacttacaga       840
     ttaccagatt caatttctga ttttgattca gattcagaat caagttttgc atctgacctg       900
     tcgtctacct tttcaaacat gccattcgat agagcttatg ccttcaacat tattccggaa       960
     ctcaatggac gttccaatat taatttattc ttggatcagt gcgattcgat ttacgatgaa      1020
     ttttgagata attgtgggcc tagtttaatt tcaattatga agtctaaaat ccctgacaca      1080
     ctttgggtgt cagttagggg ttgtacgact tatgaagact tgaaggagaa gctcatccgt      1140
     aaatttgcgg atgacactcc tattagcatg atgctaacta ctttggtaac attaaaccaa      1200
     agcaaatttg aagatctaaa atgttttaca gacagagcac aaatgatttt cgacaaattg      1260
     gtgctattaa cagaatcttt tttaaattta aaaaccgaag actccgagtc aacagcactc      1320
     gtaaaaacgc tattcaaaaa ttttttacta gatttctttg ttaaaggaat caatgatgac      1380
     aaattaagac aactcgtctt gtccaataat tttaatgatt ttaataaagc agcagattat      1440
     gctaaatgta tggaagttgt tttcaaatcg tatgattctc atacgccagc tccatacaaa      1500
     actgattcaa atttcacaaa tcaaataaga aaccaaaagc aatgcaattt ttgcaaaatg      1560
     ataggacatt ttgaaaaaga ctgcagaaaa aaacaacaaa tcaaaaattt taaaactagt      1620
     gatgaaccga gacagggctc atccaatcaa aaacaaaaac tttgtaattt ttgtggaata      1680
     aaaggacatt gggaaaacaa ctgtaggaaa aaacagtccc aagtccacac gttgaactca      1740
     aaaaaccaac aggtttcatc aaaccttcct ccagacattt tactggcaga attggtcaga      1800
     catttcaatc tgaaataata aaatttgacg agcagaacgt aacaaacaga cctttaatat      1860
     ccgtttcatc ttcagataat aattttgata aaattatctt tttattagat cctggtgctg      1920
     aagtttctgt attaaaaatc agcaaacttc attcttcaat taaaattttt tctgatgata      1980
     aaatcccctt gcaaggaata acaaattccg ttgaattttc aaaaggatca attaattttc      2040
     ctttattttt aaagcataca gttttagaac acaaattgta tgttgttgac gatcaatttc      2100
     ctatacctgg agatggtcta ctaggatcag attttttcac aaaattttcc tgtgatattt      2160
     cttttaaaaa taaaaattta aaaatttatt tgaatccttc tttagaaaat acacaattag      2220
     ctatgttgaa agctaaaaac tatgtattaa ttccagcgcg aatggaaaaa tttcagaaaa      2280
     tttttgtacc tgccaatgaa gatatattat gtcattcagg gcagattgtc gagaatgttt      2340
     ttattggtaa ttgtattgtt acaccaataa acaattttgt aacgattccc atactaaata      2400
     gtagcgagga agatattttg gttgatttga atcaacttga attcgaacct ttatctcatt      2460
     ttcaaatttt gaatttaaca aataaaaatg aacgttgtaa aaccatcatc gacaatatta      2520
     atatggaaca cttaaactcc gaggagagtg attccattac taatattatt aatgaatata      2580
     atgatgtatt ctatgtcgaa ggtgacaaat tgtcggctac taatgccact acccacagaa      2640
     taacgactaa caacggcgac aagccaattt ttacacgtca atacaggata cccactatcc      2700
     acaaagacgt gattgaaaaa gaagtacaga ccatgttaaa agatggtcta attaaagaga      2760
     gtaattctcc atggaactca cctcttttgg tggttccaaa gaagcaagat aaagacggaa      2820
     ataaaagatg gcgaatggtg gttgactttc gtaaaattaa cgatgcaacc ataagtgatg      2880
     catacccatt gccacttatt tccgatatcc ttgatcaact aggtagagca agatattttt      2940
     ctaacctaga tcttgctagt ggattccatc aaatattaat ggatccaaaa gatagtgcca      3000
     aaacggcatt ttcaacaaca tatgggcatt acgagttcct tcgaatgcca ttcggcctaa      3060
     aaaatgcacc agctacactc caacgtttca tgaataccat actgtgtggt ttacaaggag      3120
     taaaatgctt catctatatg gatgatattg tggtatatgg agatacactt aaatcacata      3180
     atacaaaatt aatagatgtt ctgaaacgat taagacaaca taaccttaaa ctccagccaa      3240
     ataaatgtaa tttcttacaa aaagaaattt tattcttagg gcacaaaatt accccagatg      3300
     gtattaagcc cgatgaggga aaaatagaag cggttcaaaa gtttccgccc cctcaaaatc      3360
     agaaggagat taaaacgttt ttgggaatga tcagttatta taggaaattt attcctaatt      3420
     tatcaaattt agctgaaccc ataaacagac tcctcaaaaa agggatacaa tttatatggt      3480
     cagataaatg tcagcaatcc ttcaatgagt tgaagtcatt gttgacatca gcaccaatat      3540
     tacaatatcc cgatttcaca aaaccttttg tgattactac cgacgcaagt aacgttgcaa      3600
     ttggagcagt attatcgaac gaggataaga acttgccaat tgcatacgca agtcgtattc      3660
     taaaccctgc cgagaggagg tactcaacaa tcgaaagaga attgttagca atagtatggg      3720
     caataaagca ttttaagcca tacgtttatg gccgagaatt ttttgtacat tccgaccaca      3780
     agcctctagt atatttattc aatgttaccc acgcatccga taggttaatg cgatggagat      3840
     tattgctaga agaatatgac ttcaaagtca tttataaacc cggaaaaaat aacgccgtag      3900
     cggacgcgct aagtcgtatt caattattaa cattagacga tcgtcatgaa atcgtaaaag      3960
     aaattggaca acaaataacc aatcaaaaaa tcgaaaaatt aaatgtcgtg acgcggcatc      4020
     aagcaaataa aaataatgct atgatagcaa atgatttcaa aacatttgaa ttgttaacca      4080
     atccatcttt gaatcaaaac gttttacaaa gaactgaaag tggttcgaaa cacttgaaag      4140
     tttttgtatt accttccatt cttgatgcaa aaatcgatta tagttttaac aaaaatgaat      4200
     ttgaaacagc aaagattgaa gatgtaggat acgttgactc cattgaatct tattttgtta      4260
     ttagtaaaaa taaccattta gacaaaattt gtaaacacaa attatataaa aaattaactt      4320
     ttcttaaaaa ccaaatgaaa aacattaata aaaagacaat aagcttttgt tttatattgt      4380
     cttcatgtga tgaaataaat tggaatttat ttcaaaacat tgtacaacat attttttctg      4440
     acgtcaattg caaaatacat ttttcaaata atctagttca aaaagtttca tctaagaatg      4500
     aaattgaaca aattttaaaa ttatatcatg atagcccttt aggtggtcat gaaggagttg      4560
     aacgtacttt taaaagaata tctgaaaaat acaagtggcc aaaaatgcgc caagatatta      4620
     aaaattacat cgaaaaatgt gatttatgtc aaaggaataa aatattgaaa gtaaataaaa      4680
     ttcctttgaa aatcacaaca acagcagaaa aaccattcga aaaaattttc ttggatatag      4740
     ttggtccatt acctaaaacc aagaatggaa ataactatat tctgacaatt caggatgatc      4800
     ttacgaaaac gttcatagcg aaagcaattc cagaagcttc agctgaaaca acttgcaaag      4860
     cattcatgga aattggtatc tgtgtgtatg gtgtccctaa aacactagtc acagatcgcg      4920
     gaacgaattt taccagtaag ctatttgaac atttgtgtaa attactacgt gtcgaacaag      4980
     tacaaacatc agcctatcat ccacaaagta atggtgcatt agaaagatgc catcgaacgt      5040
     taaaagaata tttacgttca tatgtctgtg aaaatttaaa tgattgggat gactatctca      5100
     gtcaattttg cttcacatat aatacaagtg cacattcatc tactggatac tctccatatg      5160
     aattaatgtt tggtcataaa gcagagttgc ctgtggccat acgaacagct caaaaagaaa      5220
     acactaatta tttttgttat ttgaaagacc ttagattcaa actagaatct atacataaat      5280
     tagcaaaaga tagtctaata aaaacaaagg aatcaagaaa ggaaacatat gacacgaagt      5340
     ctaatgaatg ggttccaatg tggggtgata aagttctttt aatgaacatc accattggat      5400
     ccggccaaaa actccaaggt atttggaatg gaccacatga agtagtggca ataaaatcgc      5460
     cagaaactac tcaaattaga cttaaaccgt caaacaaaat cacaacggtt cataataacc      5520
     gattgaaatt atacaaagag taatattttc ctttcaccac tttctttcac agaaatgatt      5580
     attcccttgt tcctgattaa tttaatccag ctggcattaa caacgagtcc cgtggaagta      5640
     tccccgctct acaatcatgg tattatatat gaaaaattac cagatgttaa attggaacta      5700
     ggcaaatata atttgcagtc ttttcatgat ttaagttcca ttgcagaaga aataaatcaa      5760
     cttgaaaaat taactcccgt tttaaataat agttgcacaa aattagcaac atcttttgga      5820
     attgattgca tcagaattgt taatgatgtt tcgtttgtta tgactgacat tattaatgca      5880
     agagaaatat tttcagactc ttgcaataat aaaaggtcca aacgacaaat caattttgta      5940
     ggccatatat ttaaagaaat tacaggggta atggatcatg atgattccgc taggatagat      6000
     acagatttaa aaaatttaca tgaaaatgaa atgatactta aaaaccaact aaacaagaaa      6060
     acaatcgcca ttgactctat ttttgaggaa aataataaaa caatttattc tatgcaaaat      6120
     aaactaacag aattttcaaa aatcattgat cactataata acaaaaacag cgatgagaga      6180
     accaaaaatt tagtaagaaa tgaattctcg tttattttaa ctgaattaaa ttttggatta      6240
     tcacatctaa ggagaaagat aaatttattc caaactttaa tggaaactgg aaaagttcct      6300
     cttactcctt caatatacag tccatccaga ttttatgatg atttgttaaa aataaatgaa      6360
     aaattaccgt acgggttttc aatgccattt gaattaaaat tgcaaaatat tatgaaatat      6420
     tatgcaataa gtgaagtaac ttcagtgtta catgattgta aaatttatgt gaacatccaa      6480
     ttttctataa gcaatcatgt tttgtatgaa gcttataagg gaacaagtgt acctattatg      6540
     aaaaacggta aaatgtttat cactacattt gaaaaggagg taattcttaa atctcctaat      6600
     tcaaaaattg gtatgcttgc aacatatgca gaatacaaaa cctgcaaaat agtgcaaaac      6660
     cttagaattt gtccatcgtt tcacatattg gaagacttat ctaaattgac agattgcaat      6720
     gtacaagctt tcttcaatac ttcgagtaat tcctgttttt ctcaacctat taatttaaaa      6780
     catcaaattt gggtacaaat ggtagatgaa aactcatggg ttttcgctgt tccaaacata      6840
     acccaactag atgtattatt taataacaaa cacatgtcat acgaaatatc aggaatagga      6900
     aaacttaaaa tcttacaacc agctttgata aagtcccaag aagtgctttt gcattattat      6960
     ccaaaagatt tcacaaaaat tcaatataat aattttaaga tgagtttttc acacacacct      7020
     cttgaagtga aattaattga taaaaaggtt cctgatactt tggaaacaaa aataatcaca      7080
     aatgcaaata gtaaacaatt atttcatgaa atcgtaaatt tgaaaaacat gaatcaagat      7140
     aagatgcaac ttttaaatgt cgaattagaa agacacacct ttagtttttg gacgtttttt      7200
     atgtatgtaa ttttggcagt tctatttttg tttactctgt ttcggattta cacgtattgc      7260
     aaatccaaat tttcgagggg gaggggatct cggtgccgga ctcaagaaga agaaataaat      7320
     tctcaggaaa tacaggagct taacccaaga atcaatacaa atatgttact acctagttca      7380
     gcgtatatag tagaactcga taataataaa atgaattcta aaaaaaatgt aaggaaaaaa      7440
     ccagtataca tgaatattaa tgtataaact acaagattat cacattattg aaatatattt      7500
     atataaataa ataaataact aataataaat ataataaatg aatcaataaa tataattaat      7560
     atattataat aaataaatgt gaaataaaaa tcaaatgatc aaaagcttga tttctacacc      7620
     agagaacatt ttcgcaaaat gatcttgaaa ataaaatgta tagatgttca tggattgaag      7680
     attatattta taataaaaaa aaaaaaacaa aagtttcata aacgaaactt tttcagataa      7740
     gggtgagtga                                                             7750
//
ID   Gypsy-82_CQ-LTR repbase;    DNA;    INV; 349 BP.
XX
AC   AAWU01003460;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-82_CQ_;
KW   Gypsy-82_CQ-I; Gypsy-82_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-349
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 544-544 (2011).
XX
DR   Genome; AAWU01003460; Positions     388      40.
XX
SQ   Sequence 349 BP; 105 A; 72 C; 78 G; 94 T; 0 other;
     tgtggcgata agaccactca gaggttcttg aaccatacag gttctggaac cttcatctaa        60
     ttgtttgatc ggaacattcc acaaggtgtg gaatgcataa tgtaaagttt gtcccgtgac       120
     cttatctgaa gaaggttcgt tgcacctcca aataagagag agtgcattag tcttatctct       180
     atgcttaggc taatagaccg gtcaaacaac cagagggcta tgaccggtcg cgttcctgac       240
     actgttagga acgcatataa ataggtaaga aatttgaaat aaagtcagtc gaggttgaaa       300
     ctgcaaaccg tctttagtac atggaattat cacaggcccc tgtctcaca                   349
//
ID   Gypsy-82_LMi-I repbase;    DNA;    INV; 4165 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-82_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4165
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
CC   ~90% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(39..3182,3056..3607,3462..4163)
FT                 /product="Gypsy-82_LMi-I_1p"
FT                 /translation="MPPLEEFLHSLTETLLQIQAALTGLAHHPHSPALQDV
FT                 THRVDSIAGKLNNLHMSPPTFPAFDRALEPWPNYVERLEQHFLAHGVLEEN
FT                 RRRAFFLATVGPQVYRLIQQLNPEQSPQDLSYAHIKHCLSEYFDAQIHVTS
FT                 ARQVFFSCRKSPDQTYXEWITTLQGLSRDCKFRCTNVACKQSYAPSLIRDM
FT                 VVFHAPDEGLRTEILKLQDPSLDTCLPIIRAFEQAHRPPSPRFDPAVFAAR
FT                 QSSGAGRPSRPTMDTGRDRRSSARLPSCPDCFRKHQRAECPHRQSRCTACR
FT                 RTGHIAVVCQASQKHRVDATIPEDGQAADESFTQDSGDPHYDDGQVFSVIP
FT                 QSGARLLLTLELDNTSVVFQIDTASSVSIVDGATYEQLGSPALSPYTQNLR
FT                 SFSNHHIQVDGVFSTRVAYNNRAFTAQFLVVRSAGASNLLGLDIFGRLGLS
FT                 VQDEVQAVSTPSSEALLAPLIKKYETLFSSSTPGVTGFKAHIELLPTAVPR
FT                 FFKARPVPFALRDRLQEELTRLQAEGVLSPVAHSRWATPIVLVEKPNGALR
FT                 ICGDFKVTVNSQSVIDAYPVPSIDDILARLAGSTVFAKIDLRDAYLQLPLD
FT                 EESQQILVINTPCGLFRYNRLPFGIASAPAIFQRYLEHLTNQVPGAANYLD
FT                 DVIVGGSSAVDLAKKLDQLFQVFSEANLRCRKEKCEFFAREVSYLGFKIDA
FT                 QGLHTTQDYVEVIQNLPPPTNVQQLQSVLGYINYYRRFIPNAADLSAPLTR
FT                 LLRKGARWTWDATCDQAFARLKSALLQPPCLAAYDPSLPLVVAADASDYGL
FT                 GAVLSQVVDGVERPVAFASKKMTDAQLKYSQIEKEALALVFAMTKFYDYVY
FT                 GRHFTLQTDHKPLVSLFHPGAAVPTRTARRLQRWALFLATFNFDIVYRASD
FT                 RHANADFFSRLPVGTDREFDTSPLVCFHVEPDVDAALAALPLDANTVRRAS
FT                 AKDPTLQALRRQISAGWPDSRRSIRDPAIQHFWEHRHSLFVRSGVILMHSD
FT                 SDIPRVVIHRRCNVVSSTSSTPVIGESSSPNSWRAVTFIGVGLGHSPGGHP
FT                 QALQRRVLDLLHAGHWGIVLTKQLARRHLYWRGLDKDIAHLVSACTTCQSR
FT                 QVAPPRQYFSWPEAAAPWERLHVDFAGPFHGSQWLILIDSGSGFPYVSCMA
FT                 ATTSAETIKVLRRIFAIEGLPKTIVSDNGPQFTSAEFKQFCSTNGISLVHT
FT                 APFHPASNGRGTFRANVQDPTRFPITAPSLLRPSSSNFVPPMGFLSSIPPP
FT                 SIRRLTAGERFVRTFKTQLDKLLCHYPMEEAVLMFLASYRAAPHAGKSPAE
FT                 LLHGRPFRSPLSVLVPETSRPSARPATHTFRVGQAVWARVFSHQRARWAPA
FT                 VITKLCGRAMASLLWDDGSTARRHLNQLRPRLVNDAVQGEPPVPTADHPVA
FT                 GPPPPPTPPAAPVAPAAVPPPPHEDHEPMDVDQDVPIAMDICGAVHTFVRG
FT                 R"
XX
SQ   Sequence 4165 BP; 831 A; 1291 C; 1051 G; 991 T; 1 other;
     gaattggcga cgaggatgaa aactttgtct tagtagtaat gcctccctta gaggaatttc        60
     ttcactcctt gacggaaact ctactccaga tacaggcggc gctcacaggg ttggcgcacc       120
     acccgcactc cccagcgttg caagacgtaa ctcacagagt agattccatt gccggaaaat       180
     tgaacaatct gcatatgtca ccgccgacgt ttcccgcttt cgatagagct ttggaaccat       240
     ggccgaatta tgtagagcgg ctggaacaac atttcctggc ccacggagtc ctggaggaaa       300
     accggcgtcg ggctttcttc ttagcaacag tcggtcccca ggtgtatcgc ttgattcaac       360
     aattgaaccc ggagcagtcg cctcaagatc tctcgtatgc ccacataaaa cactgcttgt       420
     ctgagtactt tgacgcgcaa atacacgtca cctccgctcg ccaggttttc ttttcctgtc       480
     gaaagtcccc agatcagaca tatsgggaat ggattacgac gctgcagggt ctatctcgtg       540
     attgcaaatt caggtgcacc aacgtcgcct gcaagcagtc ctatgctcct tcattgattc       600
     gcgatatggt ggtgtttcac gctcctgacg agggtcttcg aactgagatc ttgaagttac       660
     aggacccgtc gctcgacacc tgtctgccga tcatccgtgc ctttgaacag gctcaccggc       720
     caccgtcacc gcgctttgat cccgccgttt ttgcggctcg ccagtcctct ggcgccgggc       780
     ggccgtctcg tccgaccatg gacacaggcc gtgaccgacg gtcttccgca cgccttccct       840
     cttgtccgga ctgcttccgt aaacaccaac gagcggaatg cccccaccgg cagtctaggt       900
     gcacggcttg ccgccgaacg ggacacatcg ccgttgtttg ccaggcttca cagaaacacc       960
     gcgttgacgc cacaattccg gaggatggac aggcggctga tgaatcattc acacaggact      1020
     cgggagaccc gcattacgat gacgggcaag tattttcggt cattcctcag tctggagctc      1080
     ggctcctcct cacactggag ctcgacaata cttctgtggt tttccaaatc gacactgcgt      1140
     cctccgtgtc tatcgtggat ggtgccacat acgaacaatt gggctctcca gcgttgtcac      1200
     cctacactca aaacttgcgc agtttcagca atcaccatat acaagtcgac ggcgtttttt      1260
     cgacgcgagt cgcttacaac aaccgcgctt tcaccgctca gtttctggtg gtgcgctcgg      1320
     ctggcgcctc aaatctcttg ggtttagaca tttttggtcg tctgggtttg tcagtacagg      1380
     acgaagtgca ggcagtctcg acaccctcct ccgaggccct actcgcgccg ttgatcaaaa      1440
     aatacgaaac gctgttctca tcttccacac ccggagtgac gggattcaaa gcccatattg      1500
     agctgcttcc cactgctgtt cctcgttttt ttaaggcccg cccggtcccg tttgctttac      1560
     gtgaccgtct ccaggaggag ctgacacgcc tacaggcaga aggcgtcctt tcgcccgtcg      1620
     cacacagtcg ctgggcgacg cctatagtct tagttgagaa gccgaatggc gccttacgca      1680
     tctgtggtga ttttaaggtc acggtcaact cgcagtcagt cattgatgcg tatcctgtac      1740
     cgtcgattga tgatatcctg gcgcgtcttg caggctcaac tgtctttgct aaaattgatt      1800
     tgcgcgatgc ttatttgcaa ctaccgttgg acgaggaatc acagcagatc ctggtcatca      1860
     ataccccgtg tggccttttc cggtacaacc gccttccgtt cggaattgcc agcgcccccg      1920
     ccatttttca acgttacttg gagcatctca ccaaccaggt cccaggcgct gcaaactatc      1980
     tggacgatgt cattgtcggc ggctcgtctg cagtggacct cgctaaaaaa ctagatcaac      2040
     ttttccaggt gttctccgag gctaacctgc gttgccggaa ggaaaagtgc gaattttttg      2100
     cgcgggaggt cagctatctc gggttcaaga ttgatgccca agggctccac accacccagg      2160
     attatgtcga ggtgatccag aacctacctc cccccactaa cgtgcaacaa ttgcaatctg      2220
     tccttgggta cataaattat tatcgtcgtt ttataccaaa tgctgccgac ctatcggcac      2280
     cccttaccag gttattgcga aaaggtgcac gttggacctg ggacgcaact tgtgatcagg      2340
     cttttgcaag gctcaagtca gctctccttc aacccccatg tctggctgct tacgaccctt      2400
     ctcttcccct cgtcgtcgct gccgatgcct cggactatgg gttgggtgca gtcctttcac      2460
     aagtggtgga cggcgtcgag aggccggtag ccttcgcctc caagaaaatg acggacgctc      2520
     aactgaaata tagtcaaatt gaaaaggaag ctttggcact ggtcttcgcc atgacgaaat      2580
     tttacgatta cgtttacggt cgtcacttca cgctgcagac cgaccacaag cccctggtat      2640
     ctctgtttca ccctggagct gccgtgccca cccgtacggc acgccgcctc caacgttggg      2700
     ctctcttcct agcaacattc aacttcgaca ttgtgtatcg cgcctctgac aggcacgcga      2760
     acgccgattt cttttcccgg ctgccagttg gaacagaccg agagtttgac acctcgccgt      2820
     tggtctgctt ccatgtggag ccggacgtgg acgcggctct tgccgccctc ccgttggacg      2880
     ccaacacagt ccgaagggct tctgcaaaag atccaacact gcaagccctc cgccgccaaa      2940
     tcagtgcggg ttggccggac agtcgtcgta gcatccgcga tccggcgatc cagcatttct      3000
     gggagcacag gcacagtctt ttcgttcgca gtggagtcat cctcatgcat agtgactcgg      3060
     acattccccg ggtggtcatc cacaggcgtt gcaacgtcgt gtcctcgacc tcctccacgc      3120
     cggtcattgg ggaatcgtcc tcaccaaaca gctggcgcgc cgtcaccttt attggcgtgg      3180
     gttagataaa gacattgccc acctcgtatc cgcctgcacc acgtgtcaat cccgccaggt      3240
     agcacctccg cgccagtact tttcttggcc tgaggcagct gctccttggg aacgtcttca      3300
     tgtggacttc gcggggcctt ttcacggatc tcaatggctc atcctgatag actctggatc      3360
     ggggttcccg tatgtatcat gcatggcggc caccacatcg gccgagacaa tcaaagttct      3420
     tcgtcgcatc tttgccattg aagggcttcc aaaaacgata gtttccgata acggccccca      3480
     gtttacttcg gccgagttca agcaattttg ttccaccaat gggatttctc tcgtccatac      3540
     cgcccccttc catccggcgt ctaacggccg gggaacgttt cgtgcgaacg ttcaagaccc      3600
     aactcgataa attgctgtgc cattacccga tggaagaagc cgtgctaatg tttctggcgt      3660
     cgtaccgagc cgccccgcat gccggcaaaa gtccagcgga gttacttcat gggcgaccgt      3720
     tccgctctcc cttatctgtt cttgttccag agacttcccg gccttccgcc cgtcctgcga      3780
     cgcacacttt tcgcgtcggc caggcggtct gggcgcgggt gttctcccat cagcgggctc      3840
     gctgggcacc tgcggtcatc accaaactct gcggccgggc gatggcatca ctgctgtggg      3900
     acgacgggtc caccgcccgc cggcacctca accagctccg cccccgactg gtgaacgacg      3960
     cagtccaggg ggagccgcca gtgcctaccg ccgaccaccc tgtggcggga cctccgccgc      4020
     cgcccactcc gccggccgct ccggtggccc ctgctgcggt gccgcccccg cctcatgaag      4080
     accacgagcc catggatgtc gaccaggatg ttcccatcgc catggacatt tgtggggctg      4140
     tgcacacttt tgtaaggggg aggaa                                            4165
//
ID   Gypsy-82_LMi-LTR repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-82_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-536
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 536 BP; 111 A; 142 C; 138 G; 145 T; 0 other;
     tgctgtggca gcccctgacc gtgtagagtg cccgcataac aggcagccaa ggcgggctgc        60
     tgagctccct tttcgtaggc gctcacacgt aataacataa acaacggcca acggcagaag       120
     aaacggcgct gtacggcggc actacattac ggtcagccag tgacagtgcc cagccaatca       180
     cagcagagta ccggttgtag ccctccgccg atgccggctt cataagcgca ccgacggagt       240
     gtggagggca gtgcatactc agccaccggc cgctcctacg ccggatccag ctgccgccgc       300
     actcagcgta gttttcgcag tagtgtagtt gttttgcctt ggcctagcgc cacttgtaat       360
     agtttattgt ctgtgtgtat gttttcacta ttatacttgt tgtttgttgt ccctacgtga       420
     ctgaccatct gttttcttga cgttgtgtta ttgtacgccc agaaggttct tttgtttaat       480
     aaaccgttag caattttagg agttgttgtc tttcctgcag atcgcaggac ttaaca           536
//
ID   Gypsy-83_AA-I repbase;    DNA;    INV; 4450 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-83_AA_;
KW   Gypsy-83_AA-LTR; Gypsy-83_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4450
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions  115097  119546.
XX
CC   Positions [3621-4121] - Integrase core
CC   'GGCAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           496..1896
FT                 /product="Gypsy-83_AA-I_1p"
FT                 /translation="MEKWDIPQFKFKSLPRNVVRHEWIKYKRNLDYIIAAT
FT                 EETDRTRIKNIVLAKAGPDLQEVFASIPGADVQEDPEKTVDPFAVAINKLD
FT                 EYFSPKQHETFERNLFWTLKPNAEETLGKFMLRCQDQAAKCNFGSNAEESR
FT                 AISVVDKVILYAPNDLKEQLLQRDVLKLDDVTKIVSSYESVKHQAQSINLP
FT                 GTSYASGTSYASESDYTSPSTINKIRQQSSKRECTRCGRFGHSANDAGCPA
FT                 RSKECIKCKRIGHFVAQCRSLAILKRKQFTTQEPMWPNKRFKPHQVNEIET
FT                 ADDKGNANFLFSISDGGELIRIQLGGIVLQVLVDSGCQKNIVNEQSWKYIK
FT                 ANGAKIWNITKNCDEIFLPYGENAKPLTLLGKFDTTVSIDDAGTILETVAT
FT                 FYVVKGGQQCLLGRVTATKLGVLFIGLPSTHGINAITTTKAQPFPKIKGVQ
FT                 EKKEASSINEISNHELIGICFR"
FT   CDS           1965..4121
FT                 /product="Gypsy-83_AA-I_2p"
FT                 /translation="MTKIEEKLNSLLASDIIEPVQGGCQWVSPLVTVVKDN
FT                 GDLRLCVDMRRANAAILRERHIMPTIEDFLPRFTSARWFSRLDVKEAFHQV
FT                 ELDPQSRYITTFITHMGLFRYKRLMYGIACAPELFQRIFEQILSPYSKNVV
FT                 SFIDDVLVFASTEQEHDEVLKIVLSTLAEYGILLNQSKCLFKVSELEFLGH
FT                 AISPDGICTSNSKVESLQKFRAPTTSEEVRSFLGLVTYVGRFLPNLATITA
FT                 PLRELTHSGVKFTWGREQEESFVEIKRMIGNVQHLKFFDNTLRTRVVADAS
FT                 PVALGAVLMQFKGPTDDDPRPIAYASKSLTTTEKRYCQTEKEALALVWAVE
FT                 RFSVYLLGCKFELETDHKPLEAIFKPTSRPCSRIERWVLRLQSFSFVVKYR
FT                 RGSSNVADPLSRLVEEQAPEEFDAESKFMVLAVLESAAVDIQQLEEMSSTD
FT                 DTMEAVKQCLRTGNWDTQQVKSFAPFKNELGFVGDLVVRGNKLVVPGSLRS
FT                 RMLDLAHEGHPGESVMKRRLRDRVWWPGMDRDAEQRVKSCEGCRLVSLPNR
FT                 PEPMSRREMPFKPWIEVAIDFLGPMPCGTYLLVVIDYYSRYKEVEMMAKIT
FT                 AKETVERLDRIFSRLGYPQTITLDNAKQFVGTDLEEYSKIKGITLRHSTPY
FT                 WPQENGSVERQNRSLLKRLQISHALGRDWRRDLREYLLMYWQNSNRTVVWE
FT                 NNQIKNTCFGRPRNDTHRG"
XX
SQ   Sequence 4450 BP; 1303 A; 966 C; 1145 G; 1036 T; 0 other;
     ttggcgacga ggagcaaaat caggtaatga aacaatcgta gtattttgct ttcatgaaag        60
     ttttccagca tttgtgatta taaaaaagtg aggttaagta acagtttatt ttctcgtttc       120
     gctacggaaa ctcatagcga tagtcgcaaa ccgcaacggc agactgcggg aaactgcaaa       180
     ggcagaccgg ggggaaagac cgcagaggcg gacaacgcaa actcgcgaag gcggacgacc       240
     gaaaaaccgc agaggcggac gactgcaaaa ggccgcagag gcgggcacgt tactgattac       300
     aggacgtgga atatagccgc aaaggcggta ggctgctata tcgcagtgaa tttcgaatcg       360
     aattggacta aaggcattcc ttgcaacgga atagcagcca gagggcaacc cgtgaatagg       420
     tatgtaaaaa aaaagctaaa tactaatagt gatagaactc actcaatgta acattgattt       480
     tagaatatct cgacgatgga aaagtgggat attccccaat tcaagttcaa atcattgcct       540
     cgcaatgtcg ttcggcatga atggatcaag tataaaagaa atcttgatta tattattgcg       600
     gcaaccgagg aaaccgatcg tacaaggatt aagaacatcg ttctggcaaa agcgggacca       660
     gacctacaag aggtcttcgc ttccatccct ggtgcagatg tacaggagga cccagagaaa       720
     acagtcgacc cattcgcggt ggcgataaac aagctagatg agtatttttc gccgaaacaa       780
     catgagacgt ttgagcggaa ccttttctgg acattgaagc cgaatgcaga ggaaacatta       840
     gggaagttta tgttgcgatg ccaagaccaa gcggcaaagt gtaactttgg aagcaatgca       900
     gaggaaagtc gagcaatcag cgtggttgac aaagtcattc tgtacgcacc gaacgatcta       960
     aaagagcagc tgcttcaaag ggatgttttg aaactggacg atgtcactaa aattgtcagt      1020
     tcatatgagt cggttaagca ccaggcacaa tcgattaacc tgccgggaac gagctatgcc      1080
     agcggaacga gctatgctag cgagtcggat tatacatccc cgtcgactat caacaagatt      1140
     cgacaacaat catcgaaaag ggaatgtaca cgatgtggcc ggtttgggca ctctgcgaac      1200
     gatgctggtt gtccggcgag atccaaagag tgtatcaaat gcaaacgcat cggacatttc      1260
     gttgcacaat gccgatctct cgctatttta aaacggaagc agtttacgac gcaagaaccg      1320
     atgtggccga ataagcgttt taaaccacac caagtgaacg agattgaaac tgccgatgac      1380
     aagggaaatg caaattttct gttcagcatt agcgatggag gtgagctcat ccggatccag      1440
     ctaggtggaa tagttctgca agtacttgtg gactctggat gccagaaaaa cattgtcaat      1500
     gaacaatctt ggaagtacat caaggcgaat ggagcaaaga tttggaacat aacaaagaac      1560
     tgcgatgaga tatttctgcc gtacggcgaa aatgcaaagc cgttgacact tttggggaag      1620
     tttgacacaa ctgtgtcaat agatgacgcc ggcacgattc tagaaacggt cgctacgttt      1680
     tatgtggtca aaggtggtca acagtgcttg ctcggtcggg tcacggctac gaagttgggc      1740
     gttctgttta tcggattgcc cagcacgcac ggaatcaatg cgatcactac tacaaaagct      1800
     caaccgtttc ccaagattaa gggtgttcag gaaaaaaaag aggctagctc aattaatgag      1860
     atttccaacc atgagttgat tggtatctgt tttaggtgaa aatacccatt gatgaatctg      1920
     tgccacctgt ctgccaacaa ccgcggcgac ctcccattgc gctcatgact aagattgaag      1980
     aaaaactgaa ttcacttcta gctagtgata tcatcgagcc agttcaaggc ggttgtcagt      2040
     gggtatctcc gttggtgact gtggttaagg acaacgggga tcttcgctta tgcgtggata      2100
     tgcgccgagc aaacgcggcc attttgcgag aaaggcatat tatgccaaca atcgaggatt      2160
     tcttgcccag attcacatct gcacggtggt ttagtcgact tgatgttaaa gaagcgtttc      2220
     atcaagtcga gctggatccc caaagtcgtt acataaccac attcattact cacatgggcc      2280
     tcttccggta caagcgattg atgtacggta ttgcatgtgc cccagagctg tttcaaagga      2340
     tctttgagca gattttgagt ccctacagca agaatgtggt cagcttcata gatgacgttc      2400
     tggttttcgc cagcacggag caagaacatg acgaggtcct caaaatagta ttgtccacgt      2460
     tggccgaata tggaatccta ttgaatcaga gtaaatgtct attcaaggtt tctgaattgg      2520
     agttcttagg gcatgccata tcccctgatg gcatctgtac ttcgaacagt aaggttgaat      2580
     cccttcaaaa atttcgtgcg cctacaacat ccgaggaggt ccggagcttc ttgggtctgg      2640
     tgacgtatgt cggccgtttc ctaccaaacc tagcaacaat aactgctccg ctccgtgagt      2700
     taactcattc gggggttaag tttacctggg gcagggaaca agaggagtcc tttgttgaga      2760
     ttaaacggat gataggtaac gtccaacact tgaagttctt tgacaacacg ctgcgcacaa      2820
     gggtggtcgc tgacgcttcg cctgtggcac tcggtgctgt tcttatgcag ttcaaaggac      2880
     ctactgatga cgacccccgc ccgatagctt atgctagcaa aagtctgaca acgacagaga      2940
     agcgctactg ccagacagag aaagaagctc tcgcgcttgt ctgggcagtg gagcgttttt      3000
     ctgtctatct cttagggtgc aaatttgagc tagagacaga ccataagccc ttagaagcga      3060
     ttttcaaacc tacttctaga ccatgctcac gcattgaacg gtgggtgctt aggctccagt      3120
     cattttcgtt cgtagtaaaa taccgtagag gcagtagcaa cgttgctgac ccattatcca      3180
     gattggttga ggagcaggca ccggaagagt ttgacgcgga gagcaagttt atggtgctag      3240
     cggttctaga atcagcggct gttgatatac aacagctcga agagatgtcc agcacagacg      3300
     atactatgga agccgtaaag cagtgtttgc gtaccggtaa ctgggataca caacaagtca      3360
     aatcattcgc tccgttcaag aacgaattag ggtttgttgg agacttagta gtcaggggaa      3420
     ataaactggt ggtgccgggt agcctaagat cacggatgct ggatctggct catgagggcc      3480
     atccgggaga atcggtaatg aagaggcgtt tacgtgaccg agtttggtgg cccggaatgg      3540
     accgggacgc agaacaaaga gtgaaatcat gtgaagggtg cagattagtg agccttccca      3600
     acagaccgga accgatgagt cgtcgagaga tgccttttaa gccatggatt gaggtggcca      3660
     tagactttct cggacccatg ccttgtggaa cctatttact ggttgtaatc gactactata      3720
     gccgttacaa ggaggtcgag atgatggcaa aaatcacggc gaaagaaacc gtagaaagac      3780
     tcgacagaat atttagccgc ctcggctacc cacaaacaat taccttagat aatgcgaaac      3840
     agtttgtagg aaccgatttg gaagaataca gcaaaataaa aggaatcacc ctcagacact      3900
     ccacaccata ctggccgcaa gagaatgggt cggtagagcg tcagaaccgc tctctcttga      3960
     agcgccttca gatcagtcat gcgctcggta gggactggcg gcgggatctt cgtgagtatc      4020
     tgctgatgta ctggcaaaac tccaaccgaa ctgttgtatg ggagaacaat cagatcaaaa      4080
     atacctgctt tggacgacct cgaaacgaca cccaccgggg atgagacgcg tgacagagat      4140
     cgactgttga aggacaaggg aaaacaatca gaagatctga gacgtcatgc tagagagtct      4200
     tctctatcca ctggtgacac agtgctgatg cagaaccttt tgcctggcaa caagctgtca      4260
     acgacgttca acccgaagaa gtagctaccc gagagttcca gctcagaaga ggagtttcac      4320
     ggattcgact tggaggcggg caacgatgat cctaaaccgg ttccttccac tcgacagcga      4380
     cgcataacaa agaaaccctc tagatttgca gattacgttc cttaacattc tactattgaa      4440
     aaaggggaga                                                             4450
//
ID   Gypsy-83_AA-LTR repbase;    DNA;    INV; 195 BP.
XX
AC   supercont1.247;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-83_AA_;
KW   Gypsy-83_AA-I; Gypsy-83_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-195
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.247; Positions  114902  115096.
XX
SQ   Sequence 195 BP; 51 A; 29 C; 45 G; 70 T; 0 other;
     tgtggtgact gagtgcgggc ctgacattca tgctccttta ttgtttgtgt ctacggacgg        60
     acctgtagcg aactgtcatt attattgatg tggaattgga gattgttggt cggtacttta       120
     taaattaaat aaactgagtc attgaagttg taataaacgt gtatttaata ttcgttataa       180
     tcctgagcta ccaca                                                        195
//
ID   Gypsy-83_CQ-I repbase;    DNA;    INV; 4778 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-83_CQ_;
KW   Gypsy-83_CQ-LTR; Gypsy-83_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4778
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 545-545 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3731-4045] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           472..3798
FT                 /product="Gypsy-83_CQ-I_1p"
FT                 /translation="MPNSMTLVNQIEQFIPGTIPFAQYLEQLEWVFAHHQV
FT                 EQDEDKKKAFLAASSREVYTELKKLFPGKDLKKETFVSITTALQKRYDKTD
FT                 SDMIQRFKFYQRKQRENESAEDFILNVKQQAELCDFGQFKDQAIRDRLVCG
FT                 LNDEVLRQRLFDEEDLTLTKVEKLIVNRELATVRAKLVSDNDVYRGNVLNR
FT                 VGDRNRNNRANGAPSFRGRSRSRGRPGGRRERSRSFSAGRRHRSPAATNRK
FT                 FFCTHCRRPGHTRSYCFDLPENKKAVKFLDEPASTSKNVNRRLVNYREDES
FT                 DYDEDMNCLMISSIKKLSEPCLRQVYVDGKQLEMEVDCGAAVSVINSVVYE
FT                 KKFKHIPLMKCDRKLAVINGSRLNVEGQISVEVVFNGIRSNVKLIVLRCSS
FT                 VFAPLLGRDWLDVFTPRWRDAFGISAGIKQLDVFQDHMVEKFKRKFPNIFD
FT                 KSLASPIQGFEAELVLKCDTPIFKRAYDVPLRLKDKVIEHLKSLERDGVIT
FT                 PVDASEWASPVIVVIKKDGGIRMVIDCKVSINKVIIPNTYPLPLVQDIFAS
FT                 LAGAKVFCSLDLAGAYTQLLLSKKSREIMVINTIIGLFVYNRLPQGASSSA
FT                 AIFQRIMEKVLFNIDGVYCYLDDVLIAGKDKEDCVCKLELVLERLSNANIK
FT                 VNLQKCKWFVNSLPFLGHVLTDNGLMPSPDRVETIRRAKIPNNVSELKAFL
FT                 GLINYYGKFIPNLSTRLSCLYRLLKKEVRFVWSSECNRAFEHCKQSLLNSK
FT                 LLEFFDPSKPVIVVTDACSYGLGGVIAHQINGEERPVCFTSFSLNNAQKSY
FT                 PILHLEALAVVSTIKKFHKYLFGKKFTVFTDHKPLIGIFGREGRNSLFVTR
FT                 LQRYVLELSIYEFDIVYRPSAKMGNADFCSRFPLPEEVPAALQREYIKCLN
FT                 ITNEFPLDFALIARETKKDKFLQQVVYFMKNGWPDKLDRNFRDVYAQHQDL
FT                 EEVEGCLLYQDRVCIPVCLQKRILSLLHKNHSGITKIKQLARRTVYWFGMN
FT                 HDIECFVKSCNICCEMNAVSKPVPHSPWIPTKKPFARIHADFFYFDKKVFL
FT                 VIVDSFSKWLEVYYMKFGTDARNVKSKFMSFFCQFWSAGCCCYRWRPTVSF
FT                 S"
XX
SQ   Sequence 4778 BP; 1321 A; 804 C; 1163 G; 1487 T; 3 other;
     ttaaagtggc gacgacggag aagtactagt aaaggaagga ttcttttctc ttgcggcggt        60
     ggttttacgc tgattttctg caccggctgc tgtggtcttc ggtcattctt gacaaggtca       120
     tctggtttgt agcagattaa caagtaagtt tcacgttagc agtaagaagt tcgtttgttt       180
     ggacgctgaa aatawttatt cgagacacgt ttggtagtct ccaaattagc aacttgggca       240
     ccattttgtt ttgccattgt gtgttagaga ataaaagagt tttttgttgt tttgacgcca       300
     ttgtttagca cacgcggtag tcatcagctt tttgacgcga cacttgagtg tctgacggtg       360
     tttaataatt caaagttgtg tggcatcgca tcgggcttaa caatttgaca gtttggttgc       420
     tcctgttgca tagtttgcca agttttaatc ggctgtgttt tattctccaa aatgcccaac       480
     agcatgacgc tggtcaacca aatcgaacaa ttcattcccg ggaccatccc gtttgcgcaa       540
     tacctcgagc agttggagtg ggttttcgct caccaccagg tggagcagga tgaggataag       600
     aagaaggcgt ttttagctgc gagtagcagg gaggtataca ccgagctgaa aaagctattc       660
     cccgggaaag acctcaaaaa ggaaactttc gtgtcgatta ctactgcttt gcaaaaaaga       720
     tacgataaaa ccgatagtga catgattcag cgatttaaat tttatcagcg caaacagcgg       780
     gaaaacgaga gtgctgaaga tttcattcta aacgtaaaac agcaggcgga gctttgtgac       840
     ttcgggcagt tcaaggatca agccattcgg gatcgtcttg tttgtggttt gaacgatgaa       900
     gttcttaggc agcggctctt tgacgaggaa gatcttacgt taacgaaagt tgaaaaattg       960
     atcgtaaacc gggagcttgc tacagtgcgg gccaagctag tgtcggacaa tgatgtttat      1020
     agaggcaatg tgcttaatcg tgttggtgac cgtaacagga acaacagagc gaacggtgcg      1080
     cccagttttc gtggtcgatc gcgcagcagg ggacgtccgg gaggtaggag agagagaagt      1140
     cgttcgttct ctgcgggtcg caggcatcgt tcaccggcgg cgactaatcg taaatttttc      1200
     tgtactcact gtcgtcggcc tggtcacacg cgtagttatt gttttgactt accggaaaat      1260
     aaaaaagctg tgaaattttt ggacgaacca gcttctactt ccaaaaatgt gaatcgtcgg      1320
     ctggttaact atcgtgaaga cgagagtgat tatgacgaag acatgaactg tcttatgatc      1380
     tcgtctatca agaagttgag cgagccttgc ttgcgccaag tttacgtcga cggaaaacag      1440
     ctggaaatgg aggtggattg cggagcagca gtttctgtga ttaattcggt tgtttacgag      1500
     aagaagttta agcatatccc tttgatgaag tgcgaccgga agctagccgt aatcaacgga      1560
     agtcggctga acgttgaggg gcagatttcc gtcgaggttg ttttcaacgg catcaggagt      1620
     aacgtcaagc tgatcgtgct tcgttgtagc agtgtttttg cacctcttct cgggcgagac      1680
     tggctggatg tgtttactcc gcgctggaga gatgcttttg gaatcagcgc tgggatcaag      1740
     cagctggacg tttttcaaga tcatatggtc gagaagttta agcgtaagtt tcctaatatt      1800
     tttgataaat ctctggcatc accaattcaa gggtttgaag cagaacttgt tttaaaatgt      1860
     gacactccaa tttttaagcg tgcttatgat gtgccgttaa ggttgaaaga caaggtgatt      1920
     gaacatttga aaagtttaga gcgtgatggt gtgattacac cagtagatgc aagcgagtgg      1980
     gcatcaccag tcattgttgt gattaaaaaa gacggcggta ttagaatggt cattgactgt      2040
     aaagtttcta tcaataaagt gattatacca aatacttatc ctttgccttt agtgcaggat      2100
     atttttgcgt ctttggctgg tgctaaagtt ttttgctcac ttgaccttgc tggtgcttac      2160
     acgcaattat tgttgtcaaa gaaatcacgt gaaataatgg taattaacac aattattggt      2220
     ttgtttgttt ataatagact accacagggt gcgtcttcca gtgctgctat ttttcagcgc      2280
     attatggaga aagttttgtt taacatagat ggggtctatt gttatttgga cgatgttttg      2340
     attgcaggca aggacaaaga ggactgtgtg tgtaagcttg aattagtgtt ggagcgtctc      2400
     tctaatgcta atatcaaggt caatctgcag aaatgcaaat ggtttgtgaa tagtttgcca      2460
     tttttgggcc atgttttgac cgacaatggt ttaatgccta gcccagatag agttgaaact      2520
     attcggaggg ctaaaattcc gaataatgtt tctgaactta aggcattttt gggtttgatt      2580
     aattactatg gtaaattcat tcccaatttg tccacacgcc tcagttgttt gtatcgttta      2640
     cttaaaaagg aagtgcgttt tgtttggagc tctgagtgta atcgagcttt tgagcactgc      2700
     aagcaatctt tgttaaactc aaaattgttg gaattttttg acccgagtaa gcctgtgata      2760
     gttgtgactg atgcttgtag ttatggtctg ggtggagtta ttgcacatca gataaatggt      2820
     gaagagagac cagtttgttt tacatctttc agtttaaata atgcacaaaa atcttaccca      2880
     attctgcacc ttgaagcatt agctgttgtt agtaccatta agaagtttca caagtatttg      2940
     tttggcaaga agtttacagt ttttactgat cataagccgt taattggaat ttttggcagg      3000
     gaggggagaa actcgttgtt tgtgacacgg ttacaaagat atgttttgga gttgagtatt      3060
     tatgagtttg atattgttta cagaccctct gccaagatgg ggaacgcaga cttttgctcg      3120
     cgttttcctc tacctgaaga agttccagct gcgcttcagc gagagtatat taaatgttta      3180
     aatattacca acgagtttcc tttggatttt gcccttattg caagggaaac caaaaaggat      3240
     aaatttttac aacaggttgt ttattttatg aaaaatggtt ggccagataa attggaccgg      3300
     aactttcggg atgtttacgc tcaacatcaa gacttggaag aagttgaagg ttgtttactt      3360
     tatcaagatc gtgtttgtat tccagtttgt ttacaaaagc ggattttaag tttgttgcat      3420
     aaaaatcatt caggtattac aaaaattaag caactggcaa gaagaactgt ttactggttt      3480
     ggcatgaatc atgacattga atgttttgtt aaatcatgta atatttgttg cgaaatgaac      3540
     gctgtttcaa aaccagtccc tcactcacct tggattccga ctaaaaagcc ttttgctcgt      3600
     attcatgcag atttctttta ttttgataag aaagttttcc tggttattgt cgatagtttt      3660
     tcaaaatggt tggaagttta ttacatgaag tttggaacag atgccaggaa tgtaaaatca      3720
     aaatttatga gttttttttg ccagttttgg tctgccggat gttgttgtta ccgatggagg      3780
     cccaccgttt cattctcgtg agtttgttga ttttttggag agaaacaaca ttagggtgat      3840
     gaagagccca ccgtataatc catccagcaa tgggcaagct gagcgaatgg ttagagtcgt      3900
     caaggaaggg ttgaaaaagt ttatgttgga tcccgagatg aagggaatga acatagagga      3960
     cgtagtttcg tttttcttgt ttaattatag aaatacctgt ttggataatg gttcgtttcc      4020
     gtccgagcgt ttgtttaatt ttaaacccaa aacattatta gatttgttga atccacggag      4080
     cagttttaag aaaaatttga cgactaacga gaaagctgaa agtgtacctg ttgctccagt      4140
     gaaaagagat gagattgaca atcttcggcc gggagatcta gtttatttta aaaatttcaa      4200
     atcaacakaa attcgtcgtt ggttggaagc aaaatttctt agacggattt cttctwatac      4260
     atttcaggtg tccgttgggg gccgcgttta cctggcccac agaaatcaga ttaaggtagc      4320
     gcgtggtggc tacacccggg gcggtctgct ggtggcgtcg aggtacgaga gaatgcagaa      4380
     tcgaaagaga agccgcgaag aagaagaaga cgatgccgac gatgaatttt acgggttcgt      4440
     ctccgattct ttcgtcttcc acgagccgat ggacgtcgac caagaaggtt ctcgcgagtt      4500
     cgatccccag gagggttcat caagaagtat aaggtgccct gagaatttgc gttcagaagg      4560
     tcaacaagat cattcggaat tcaatccgcg tagatcgagc cgattgaaaa aggctaggaa      4620
     agatagtcgt tttgtttatt tctaaaaaaa aagcaatgtt gaatttcttg tacaaataat      4680
     tgattgcatt tttaattggt gtctttcatt cagaattaaa tatcagtgaa attttgaaat      4740
     attaattgta ataaactata actcaaaaag ggaagaac                              4778
//
ID   Gypsy-83_CQ-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-83_CQ_;
KW   Gypsy-83_CQ-I; Gypsy-83_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-169
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 546-546 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 169 BP; 48 A; 47 C; 24 G; 50 T; 0 other;
     tgtaataaca accctgcaat gtcgacatac aagtcgacat accttttgta agcaaagtcg        60
     ataagctagt gtgagcaata aaactctgtc tcttctactg cgaaccaccg acctactcgg       120
     tcctgttttc cttatctcat catccgagtc tcaatcactt tcacttaca                   169
//
ID   Gypsy-83_LMi-I repbase;    DNA;    INV; 6526 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-83_LMi-I.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6526
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (26-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   ~80% identical to the consensus. Termini are unknown.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2334..3194,3314..4519,4381..4818,4859..6295)
FT                 /product="Gypsy-83_LMi-I_1p"
FT                 /translation="MSKWATEHEQVLCLRREREDIIRRLADAESQLSSAKQ
FT                 HLASLRAASKDTNFKVSTCSLSANSDVAPAHKVNSDSDSSVPPPHSYVEVC
FT                 KQNSVAMTTPCAVNASRTSCPLAPAPRTSHPAANLRTGTLTSPASSQPSRR
FT                 ITVVNYAKIIASHGKRAPARALNPSSSVXIESHSVSSVQSPVVTPAARPPS
FT                 SASATVAPPLMSAATCRTTSSPILPAAAQPPSCHPHRWCCQLQRQLTATLS
FT                 AGSPAAPAAADTTSHFASCRQPQQLTGSPTALWREHPSCQXGIRLTQTMPS
FT                 MRXEVCGGRGTDFELLNSGIIEPSSSNWSSPIHLAKKGDGSWCMCGDYRKL
FT                 NAKTIMDRYPIPNVADFTHALVGVKVFSVVDCKRAYHQIPMALEDIEKTAI
FT                 TTPIGLCHYRFMPFGLKNATQTWQRFITEVLFPLKFCFVYLDDILIFSASV
FT                 KENKQHLQILCDTLAGAGIELNHNKDQLHQTSVHFLGYTVSADGISPPVEK
FT                 VNSVKDLPHPSNFKELRRFLGTINYYQRHLPGAADIQAPLTNALAGKHTSG
FT                 TRPVPWTPEMTDAFSALKELLARAVTIAHPHPDADIFITTDASDTAIGTVL
FT                 SQSLTGVTSPLQFFSKKLNNAQRKYSAFDHELLAIYEAIKHFHSDVEGCPF
FT                 YVLTDHKPLAAAIQNPPADPLLAAFATLTSSHNLQPTSGTCRGLSFLCTHG
FT                 PQASCGSNSEPPGRPPPRRFRYLDFISQFTTNVRYMKGADNIVADFLSQVD
FT                 AVSSLINLSNLAALQATDDDLMQLVSDPASSLHPIHTSFPGVMGKIWCDDS
FT                 TGRLRPLIPRLLQCEIFQKLMTWHILAFVPPPDLPSLGVHLPTCQCNKIST
FT                 HTSPPLGPFPVPAGRFQHVHIDLVGPLPPADRFRYILSATDRTTQWVEATP
FT                 LTNITAETVARAFIQSWIARFGCPLVLTTDQGRQFESALFSDLCHLCGIKR
FT                 IHTTAYHPQSNGLVERWHRTLKTALQCHDSIWTEALPLVLLGLRATYKEDL
FT                 RGSVTKFVYRQPLVLPGELINPSPPPIPSDLPTLINRVHLHCANINPPPPA
FT                 SHSPPSICIPRELDDCDFIMLRDDTVRPPLSPPYSGPHRVLKKSPNTFIIL
FT                 INGKPSTVSINHIKPAHVEPASPPQDEVTPPPSAHFARGLPFSPFSCHFSC
FT                 SHLEQFALSLFPSIQGLPILPLSRLPAPSPPLHPGSRVRVLPVPPPPPLAT
FT                 DISIFLLEGSLYIVCMATSGSPPPQQTKCELLKCFDPPPLQRMWTPRRISP
FT                 PIMCSAHRHPTPVFCTPTHTPTGSSSPPPVTLGGLLSLRPHRSPPTHSVEP
FT                 TR"
XX
SQ   Sequence 6526 BP; 1421 A; 2169 C; 1335 G; 1591 T; 10 other;
     gaactaacgg ctttctgcca caatgacttc accagtggac ccatgccagc tacattctgg        60
     ccccgcaaac attcacagcc tcgcctcaac tacagatgcg tcaaattctt tctcttcaac       120
     gcctctcaaa cggtctggca tttttctcaa gacctttttg cttcagatct gcgcaacatg       180
     gacatcatca caatggacta gggctttgtt actccgaaca ttgcacacag tgcacaggat       240
     ttgaacagtt tccgtcctca acagaactat ttcacatgtg ctcaacatct gcstctgtca       300
     aacgctaatg gtgaaatttc agtgctgagt ttgaattctc gcccgccact gtgccaccat       360
     gtgcttcagt gtatcatcca tggtccactg cctgaccaac agttgcacaa actttgttcc       420
     agcaagatct tgtttgatct gcccaccttg tgctactgct agtgaacact ttttaactct       480
     tcgtcgagtt cggtttatgg attgagctcc tgctcacacg tttccgctgc actttttctt       540
     cgtgtgcagt gtctgtgacg agcggcgcca taccatctat cctttgtgca accgccagtg       600
     cagtttctca mtcgtgacag tgctctgaac actcaaaatc tcgcaagtgc ttttccgcgc       660
     atgaactttt tgaacagtga caattttcag aatgtgcagt catactcgcg tccgggtgca       720
     cctgccgcgc cgcgactaca agtgcaccct ctctgctcat atgactggca cttctcaaaa       780
     ctctttcgtg ttcgcacaca acccatttct ccacacattt tggtgccgct gccgcgtcgg       840
     cctaccgtgt caccccacaa cactgtctgc cacgcatccg ctcgcattcc cggtcccacc       900
     ggggacctct gccatgccac tgacccatgc attgccacaa ccaacagcag tcagacgcag       960
     ccgccacagg gacgccaagc ccaactcctg gtgccgttca ccttggtgga acaaatcttc      1020
     gaccactact cgctcgatga cgcggctcgt tatctctgtt taataatgca tctacatgag      1080
     cacgtcgacc tcatctgcga cttagtcact tcgccaccca cctctcaccg ctaccactcg      1140
     gccaagcaga caattctcga gcgggtaacc cacatacctg atgaaaccat ccgccacatc      1200
     ctgcacgagg aacacctcgg tgacaagaaa cccttgcaac tgtggcggcg cctccaccta      1260
     ctggtcagcg aacacgctat gcccgactca acactcatgg cagtctggac cagcaagctg      1320
     ccgctcctgg tccagacagc actcacctac aacatacttg agtcgcctgg tgagcgcatt      1380
     cgcattgcgg accgagtgca tgakgcatac cttcgggagg cacgccacaa gctgsagtca      1440
     caggctcagc aatcacactc agcctcgcac cttcactgag gacgttcctg ggtacctgac      1500
     gaactgatcg agccgcccgg cattccttgc cactacacca ctgagatgcc gcagcctcac      1560
     cctccggcaa cgcaacacac ctaccccatc tgctgatcca acaagggccc gcctccactc      1620
     atccgctatc cgcaggaaca ggcccacatt atccgctctg ttactttcac acccattttg      1680
     gggatgctgc tcggaagtgc caccagccat gccttcaccc aaacgcagag cgcaggatga      1740
     cttaggcacc cgtcctgctc agcggaaacc aggcacctat atatctgcat tccatatgag      1800
     ggtctccgcc cccggtggtc gcttcatgac tgcatttccg gcactcgctt cctgatcgac      1860
     acgggtgccg atgtctcgct gcttccatcg tccatggtga ctggcactct acaacctctc      1920
     cgagcagttc ttcgagctgt caacgcctct cagcttccgt gtgccggttc tacctcatac      1980
     tctgttcacc tgtctcccga gtgcatatta aaatggaact tttttgtcat ggctgacatt      2040
     ccggaaccta tactaggcat ggatttcctg gctcaccaca aactttctcc cgatgttgtt      2100
     cgtcgagccg tctttcacca tacctcaaac agacacttcc cgtgtgattc gtcgagctct      2160
     acccctcccg tcacgtgtgt aaagacagtt gcgagtgttt gacaaacatt aacgagttcg      2220
     acaaactttt gtcaaagtgg tctagtgaac atgacgaagt gattaaactg tgccgtgaaa      2280
     gggaaaacat tgtccgcgag tgctctgaca ctattaaaca gtcggatttg cttatgtcaa      2340
     agtgggctac cgaacatgaa caagtgttgt gccttcggcg cgagagagag gacatcattc      2400
     gccgcctcgc tgatgctgaa tcccaactgt catctgccaa gcagcacctt gcgtctctcc      2460
     gagcggcttc aaaggacact aatttcaagg ttagtacttg ttctctcagt gcaaacagtg      2520
     atgtcgcgcc cgcgcacaag gttaacagtg attctgacag ttcggtaccc cctccccact      2580
     cctacgtgga ggtatgtaaa caaaactcgg ttgccatgac gaccccgtgt gctgtcaacg      2640
     cgtcgcgcac atcctgccct cttgcgcctg ctccgcgcac ctcgcacccc gcagccaact      2700
     tgagaactgg aactttaact tccccagcct caagccagcc ttcccgtcgc atcaccgtgg      2760
     tgaactatgc taaaattatt gcatctcatg gtaaacgtgc tcctgctcga gctctcaacc      2820
     cttcctctag tgttttsatc gaatctcata gtgtttcgag tgtgcaatct ccagttgtta      2880
     cacctgccgc tcgaccgcca tcttctgctt ctgcgacagt ggcgccccca ctcatgtcgg      2940
     cggccacttg cagaactacg tcctctccca tcctgcctgc tgctgcccag ccgccatctt      3000
     gccacccgca caggtggtgc tgccaactgc agcgacagct gaccgccacc ctatcagctg      3060
     gcagtccagc agctccwgcg gcagccgaca caacctccca cttcgcctcc tgccggcagc      3120
     cacaacaact gacggggtca ccgaccgcac tgtggcgtga gcaccccagc tgccaacakg      3180
     gcataagact cacgtgaacc cgctttggac tctgccgctc cctccctgct acagtttcac      3240
     agcagtgcgt ttcagttgtc accaatggta ctgtacacaa actacgacta acagatgaca      3300
     ctcccgtcgt tagcaaacca tgccgtctat gcgcwgagaa gtttgcggcg gtagaggcac      3360
     agatttcgag ctgctcaatt ccggcattat cgaaccttca tcgagcaatt ggtcttctcc      3420
     catccactta gctaaaaaag gtgatggttc ttggtgtatg tgtggggact atcggaagct      3480
     caatgccaag accatcatgg acaggtatcc aattccaaat gtcgcagact ttacccatgc      3540
     acttgtgggt gtgaaggttt tttctgtcgt ggactgtaaa cgagcatacc atcagattcc      3600
     gatggctctg gaggacattg aaaaaactgc catcacgact ccgatcggtt tatgtcatta      3660
     ccgcttcatg ccctttggac ttaagaacgc cacacaaact tggcaacgct ttataaccga      3720
     ggttctcttt ccacttaaat tctgttttgt ttacctggat gacatactga tttttagtgc      3780
     ttctgtcaaa gaaaacaaac aacacctgca gatcctatgc gacactctag ctggggcggg      3840
     cattgagtta aaccacaaca aggaccaact ccaccaaacc tctgtccact ttctaggcta      3900
     cactgtctct gcagatggca tctcccctcc agttgagaaa gtgaactctg ttaaggacct      3960
     ccctcaccct tcaaacttca aggaacttag acgtttcctg ggcacaataa actattacca      4020
     acgtcatttg ccgggtgctg ctgacattca agctccactt acaaatgcgt tagcaggcaa      4080
     acacacctct ggcactcgcc ccgtgccctg gaccccggaa atgactgacg cattctcagc      4140
     acttaaagaa cttttggccc gcgctgttac cattgctcac ccccacccgg atgcggacat      4200
     ttttatcaca actgacgcca gtgacaccgc aattggcaca gttctcagcc agtccctcac      4260
     cggtgttact tcacccctac aatttttctc taaaaaactt aacaacgctc agagaaagta      4320
     ttcggccttt gaccatgaac tgttggccat ttatgaggca atcaaacact ttcattctga      4380
     tgtcgagggc tgtccttttt atgtactcac ggaccacaag cctcttgcgg cagcaattca      4440
     gaaccccccg gccgaccccc tcctcgccgc tttcgctacc ttgacttcat ctcacaattt      4500
     acaaccaacg tcaggtacat gaagggtgcg gacaacattg tggctgactt tctgtctcag      4560
     gttgatgctg tttcctcact gatcaacctt tccaacctcg ccgccttaca agccactgat      4620
     gatgacctca tgcaactcgt ttctgacccc gcttcctctc tccaccccat ccacacctct      4680
     ttcccgggtg tcatgggcaa aatttggtgt gatgattcga caggcagact tcgtccccta      4740
     atmcctcggc tgctgcaatg cgagatcttc caaaaactca tgacctggca catcctggca      4800
     ttcgtgcctc caccagacta gtgactgaac gttttgtctg gcggaatatg aaacgtgact      4860
     gccaagcttg ggcgtgcacc tgcctacctg tcaatgcaac aaaatctcaa cacacacttc      4920
     ccctcctttg ggtccctttc ctgttcctgc aggcagattt caacatgttc acatcgacct      4980
     agtcggccca cttcctcctg ctgacaggtt ccgttacatt ctctctgcca ctgaccgcac      5040
     cactcaatgg gtggaggcca ccccccttac caacatcaca gcggaaacag tcgcgagggc      5100
     tttcatacag tcatggattg cccgcttcgg ctgccccttg gtcttaacca cagaccaagg      5160
     caggcagttt gaatcggccc tcttctcaga cctctgccac ctctgtggca tcaaacgcat      5220
     ccacaccacc gcctaccatc cccaaagcaa cggattggta gagcggtggc acaggacact      5280
     taaaaccgcc ctccaatgcc atgactctat ctggacggag gctctccccc tggtcctact      5340
     cggccttcgt gccacctaca aggaggacct ccgtggctct gttaccaagt ttgtctatag      5400
     acaacctctt gtcttaccgg gggagctcat taacccctca ccccctccga ttccgagcga      5460
     cctgcccacc ctcatcaaca gggtccatct ccactgtgca aatataaatc cccctccccc      5520
     agccagtcac tctccccctt ccatctgcat cccacgggag ctggacgact gtgacttcat      5580
     catgctacgt gatgacacag tgcgcccccc tctcagcccc ccatattctg gcccacatcg      5640
     ggtcctcaag aaatcgccaa ataccttcat catcctaatc aatggcaaac cttccacagt      5700
     ttcaattaat cacatcaaac cagctcacgt cgagcctgcc tcacctcctc aggacgaggt      5760
     cacccccccc ccctctgctc acttcgcacg aggcctcccc ttctccccct tctcctgcca      5820
     cttctcctgc tcacatctcg agcaattcgc cctctccctc ttcccctcca ttcaagggct      5880
     ccccatcctc cccctttcgc ggcttccagc accttcccct cccctccacc ccggtagtcg      5940
     agttcgagtt cttcccgttc cccccccccc tccccttgcc accgacatat caattttctt      6000
     gctggaaggc tcgctgtaca tagtttgcat ggccacaagc ggttccccac ctcctcaaca      6060
     aacgaagtgc gaactactca agtgtttcga cccccccccc cttcagcgga tgtggacgcc      6120
     tcgccgcatt tctcctccca tcatgtgtag tgcgcatcgt catcccactc cggtcttctg      6180
     cacgcccacc cacacgccta ctggatcgtc gagtccgccc cctgtgacac ttggcggact      6240
     tctcagtctt cggccccacc gctcgccgcc tacacactct gtcgagccta cccgatgacg      6300
     cggtggagct caccatagtc tgggcgccga ggtctgcaac gtcgactgct gccgtcgcct      6360
     cgcccctccc cgtctcagag gagtactcca tatgcagggg ggggggggct gtgtggtggc      6420
     gatagccaac gaactgtcaa mcatcttttg agtgtaattc tatcactaag atctttgggc      6480
     atgctgtatc ttggcgctat gaaatttgta accagtctgt gtatgt                     6526
//
ID   Gypsy-84_AA-I repbase;    DNA;    INV; 5455 BP.
XX
AC   supercont1.15;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-84_AA_;
KW   Gypsy-84_AA-LTR; Gypsy-84_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5455
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.15; Positions 1934765 1929311.
XX
CC   Positions [4474-4941] - Integrase core
CC   'GTGTA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1392..3095
FT                 /product="Gypsy-84_AA-I_2p"
FT                 /translation="MEEARPIPPFRCESMEKQKLSREWESWKGSLECYFDA
FT                 YSITDQRMMKAKLLHLGGVELQRVFRSLPNHDKFPVVALDPKFYDLAIDIL
FT                 DAYFQPGKQDVIERRKLRQLKQDVGEKFSHFLIRLRQQAANCGFEKYHADV
FT                 GDVLMEIYLIDIIVENCRSEELRRSILKKDRKLTEIEEIAACIEGTEQQLK
FT                 DLKESTSNTREASVYQVRDPRPSFRERNRTLGPRGAPLNSRSTISQPSWKN
FT                 TNVSCFACGESGHISKSPNCPARGRTCRRCKRLGHYEATCRKRKAEASLVP
FT                 KSKKVFSVDENRGSESAVEKPECATGESEKVYYAFYGGNESNVLPGVIGGV
FT                 STELLVDSGADVNLIKLETWETMKEKQVKIIKSVKGCSKILKGYGSDKPLD
FT                 IVGSFIAEIIVGTRAATAEFFVVKGGQKDLLGDSTAKRLGVLKIGLNINHL
FT                 ESPLKPFNKIMDVQAHIRMNPHFKPVFQPLRRVPIPMEEAVNKKLDQLLTR
FT                 DIIEVKTGPSTWVSPLVIVGKASGEPRICLDLRSGACRRFEGRYYVHHQPR
FT                 PFFVLSVCLSDWSQLLKFSNV"
FT   CDS           3493..5430
FT                 /product="Gypsy-84_AA-I_1p"
FT                 /translation="MNKYIPDLATLAEPLRKLTQKNVKFEWGEAQNNSFQA
FT                 VKKALATATKLGFFDPKDHTAVMADASPTGLGAVLIQKNALGDSRIICNAS
FT                 KSLTDTERRYCQTEKEALALVWSVERFRMYLYGREFDLITDCKALEFLFTP
FT                 RSKACARIERWVLRLQTFDYRMVHIPGSQNIADALSRLDSSKPVAFDSEEE
FT                 LFIRHIAGTAAASFALKWETIEEESKRDPEILELIEMIRNEDEESLPLSYK
FT                 VIYNELCIVGEVVLRVDRIIIPKSLRDRVLNLAHEGHPGMRMMKSHLRTNV
FT                 WWPQMDQHVEKFVKQCKGCALVAAPNPPEPLIRKQLPDQPWIDVAADFLGP
FT                 LPDGQHLLVVIDYYSRFMEVSEMHSITASDTISELAIIFSRYGLPMTLRVD
FT                 NGPQLNENCEEFREFCESSGIKLINTIPFWPAMNGEVERQNRSLLKRLRIA
FT                 QQLGKDWRAEMRQYLLTYHATNHTVTGKSPAELMFGRRIRTKLPQVPPNRL
FT                 EDEEVRDRDTIIKEKGRVYADTKRKAKESKILVGDRVLAKRMKKDNKLDTV
FT                 FSPEEFEVIRKAGADTIIRSHVTGKEYRRNVAHLRKLESAGTPETADVSAG
FT                 PCPSTSEFPETTGRTTLEKPSSDKEDPLTRRAARSRNEPKYFKDFIPH"
XX
SQ   Sequence 5455 BP; 1746 A; 930 C; 1325 G; 1454 T; 0 other;
     acctggcgac gagaataaat cgaggtaagc gtgattcgat tcggtggata attagaatcg        60
     gtcgcgaatg aaacgcatgt gaaaaaaaaa tggccgagtt tgtgcatttc aatttaccgg       120
     tgaagagcat ggagagaaga atgaaagttt gggctttata aattcagaac atgggagcgt       180
     tgtggttcta tatgcttatt gtgaaatgtg actttttact ttgaagctta atcgaaatga       240
     tacgatgaaa aaaaaggaat gttatttctt aaatgtgctc taaaacaaag cggcacactt       300
     tgcagtggtg tgagtgcggt atataagaac attggaagca gatgtgtcat cgaaatcagc       360
     attactgatt ctttgatcat gagttctcca tacaacgtaa ggtggtatgc tcgtagcttt       420
     ctctcttacc aatacatgca tatctttgtc attatgatac ataaaaataa cggtagtgta       480
     aaaggtagtg gagataaatg aggaaaacaa aacagatgag ggagatgtga acgtattgaa       540
     gaattcagat gatgtaggca taaaaaaaaa tggtttggaa tcagtgccat ccgaaatatg       600
     catgtttcaa agttgggaat ggatcgaagt gataaatgaa tgaaccagta gcgttcgaat       660
     tggttaatgg tgactgatat gtgtggaagt cgattatttc tatggaagta agagtatcct       720
     ttggaccagt agcgtcaaag ggggtgaaga taaagggtga ataaaagttc gtttctgcaa       780
     gtttatcctt ctgaccagca gcgtcggagg aggtgaggat tttgtttttt agatggaaga       840
     aaggaaaaaa ctcttgtgtg tatctttggt ataagcgaag atgtggatat ggaagtatat       900
     gtttttcaag ttttgtgaag atgtatcctt tagaccagta gcgtcaaagg aggtgaggat       960
     gaagttagtg aagtccaata ttgcaaaatt atttgacacc agtagcgtgc aaaataaaga      1020
     gaagtgcaag aaatatatga atacaagaaa tcaaccggca cggtttcagg aaaatcgtca      1080
     aaaaaaatac aaacggaggg ttactaaact acaagagttt ctctcaggta agtgaatttt      1140
     gaaactatat gaaacacata attcagaatg aggggtattg ataaaaaaaa aaaaaatttc      1200
     aaaattatta ttgaatacat tcagataaat tctgctaatt ttatgaggta taaattgaat      1260
     gagtgggcta caatgagtac tgtgtataat aacatgctta cagtaaaata catgctcttc      1320
     ctgacaattg aaatgcacaa tcaacaaaaa tatgtaggca cgggtaaaaa aaaaaaaaaa      1380
     atattttaca gatggaggaa gctagaccga tacccccatt cagatgtgaa tctatggaga      1440
     agcagaaatt gtctcgtgaa tgggagtcgt ggaaaggatc tttggaatgc tacttcgatg      1500
     cctattccat tacagaccaa cgaatgatga aggcaaagct tcttcatctg ggtggggtag      1560
     aactacagag agtgttccga agtttaccaa accacgataa atttcctgtc gtggctctgg      1620
     acccaaaatt ttatgatttg gctattgaca tcctggatgc atactttcaa cctgggaagc      1680
     aagatgtgat tgaaagaaga aagcttcgtc aattaaaaca ggatgtgggt gaaaagtttt      1740
     cacatttttt gattcggctt cgtcaacaag ctgcgaattg cgggtttgag aaatatcatg      1800
     cagacgtcgg tgatgttttg atggaaatct accttatcga tatcattgtg gaaaattgtc      1860
     gttctgaaga actgaggcga agtattttga agaaggaccg taagctcaca gaaatcgaag      1920
     aaatcgctgc gtgtattgaa ggaaccgaac aacaattgaa ggacctgaaa gaatcaactt      1980
     caaataccag agaagcgtca gtatatcaag tccgtgatcc gaggccgtct ttccgggaac      2040
     gaaacaggac gcttggtcca cgaggtgcac ctctgaattc tcgatctact atcagtcagc      2100
     caagctggaa gaacacgaat gtatcctgtt ttgcttgtgg agaatcagga cacatttcga      2160
     agtcaccgaa ttgtccagcc agaggtcgta cttgtcgtcg ctgcaagaga ttgggccatt      2220
     acgaagcgac ctgtcgaaaa cggaaagcag aagcatcatt ggtacctaag tcgaaaaagg      2280
     tattcagtgt tgatgaaaac aggggcagcg aatcagcagt agagaagcct gaatgtgcca      2340
     ccggagaatc agagaaagtt tattacgcgt tctatggggg aaatgaatcc aatgtactac      2400
     ctggtgtgat tggaggagtt tctactgagc ttttggtcga ttccggagcg gatgttaatc      2460
     tgattaagct agagacatgg gaaacaatga aagagaagca agttaagata atcaaatcag      2520
     tcaaaggatg cagtaagatc ttgaaagggt atggtagtga caaaccgttg gatattgttg      2580
     gatcctttat cgcagaaata atagttggta ctagagctgc aactgccgaa ttttttgtgg      2640
     tgaaaggggg tcagaaggac cttttgggag attcaactgc aaagcgttta ggtgttctca      2700
     aaattggtct gaacatcaac catttggaat cgccgctaaa acctttcaac aaaattatgg      2760
     atgttcaggc ccatattcga atgaatccgc atttcaaacc ggtattccaa ccactccgta      2820
     gagtcccaat cccaatggaa gaagcggtta acaagaagct agaccaactc ttgactcgtg      2880
     acatcataga agtgaagaca ggtccgtcaa cgtgggtttc gcccttggtg attgtaggaa      2940
     aagcttccgg tgaacctcgt atttgcttgg atctgcggag tggagcttgc cgaagattcg      3000
     agggacgtta ctacgttcat caccagccga ggcctttttt cgttttaagc gtctgccttt      3060
     cggattggtc acagctcctg aaattttcca acgtgtgatg gaagaaatgt tgtcgggatg      3120
     cgaaggctgt tactggtatt tagatgacgt tattatcgaa ggagagacgc aggaagctca      3180
     tgatgccaac ttggagaagg tactgtaaat tgattgtctt tcgtttaaaa gaaatatgta      3240
     ttcaaataaa ggtatggttg ctattgtttt aatattttaa tttcaaaaca ggtgctaaat      3300
     agactgaagg aaaaaggagt agaattgaac tgggacaaat gtaaaatcag cgtcaaagag      3360
     ttggattttc tgggccatca catatcagaa aaaggtatca gtccgtctca aaccaagatt      3420
     gattcgattc tgttatttcg acaaccagca acggagtctg aagtaaggag ttttctggga      3480
     ttggccaatt atatgaacaa atacattcca gatttggcta ctttggcaga gcccttgcga      3540
     aagcttacac aaaagaacgt aaaatttgaa tggggtgaag cgcagaacaa ttcatttcaa      3600
     gcagttaaga aagctttagc cactgctaca aaactggggt tctttgatcc aaaagatcat      3660
     acagctgtga tggctgatgc tagtccgact ggattgggcg ccgttcttat tcaaaagaac      3720
     gcattgggtg attcaaggat aatttgcaac gcgtccaagt cgctgacgga tacagaacga      3780
     cggtattgcc agacggaaaa agaggctctt gcccttgtat ggagtgttga gcgcttccgt      3840
     atgtatttat atggcagaga gttcgatctt atcacggatt gcaaagcatt ggagtttctg      3900
     tttaccccac gatcgaaggc ttgtgcacga atcgagcgat gggtgctaag actgcaaact      3960
     ttcgattata ggatggtcca cattcctggt tcccagaata tagcagatgc tctttctcga      4020
     ttggattcat ctaagcctgt tgcgttcgat tccgaagagg aattattcat tcgtcatata      4080
     gctggtacgg cagccgcatc ttttgctttg aaatgggaaa caatagagga agaaagcaag      4140
     agggatccag aaatccttga actgattgaa atgattcgta acgaagatga ggaaagcttg      4200
     cctttatcat ataaggtgat ttacaatgaa ctttgtattg tgggagaagt tgttttgcgt      4260
     gtcgatagga ttatcattcc gaaatccctc agagatcgtg ttttaaatct ggcgcatgag      4320
     ggacatcctg gcatgcgtat gatgaagagt cacttgagga ctaacgtttg gtggccacag      4380
     atggatcaac atgtcgaaaa atttgtcaaa caatgcaagg gttgcgcctt ggttgctgct      4440
     ccaaaccctc cagaaccgtt gattcgtaaa caacttcctg atcaaccgtg gatcgatgtt      4500
     gcagctgatt tccttggtcc tttgccagat ggacaacact tattggttgt gatagattat      4560
     tacagccgct tcatggaggt tagcgaaatg cattcaatta ctgctagtga tacaataagt      4620
     gaactagcga taattttcag ccgttatggt ctgccaatga cattgagagt tgacaatggc      4680
     ccacaactga atgagaattg tgaggagttt cgcgaattct gcgaatctag tggcatcaag      4740
     ttgatcaaca ctattccttt ttggccagct atgaacggcg aggttgaacg ccaaaacagg      4800
     tctcttttga aaaggctcag aatcgcacaa caattgggaa aggattggag agctgaaatg      4860
     cgtcaatatc ttttgactta ccatgccacg aatcacactg taacaggaaa gtcaccagct      4920
     gagctcatgt ttggcagaag gataagaacc aagctaccac aagttccacc aaatcgtcta      4980
     gaagatgaag aggttaggga tcgtgacacc atcataaaag agaaaggcag ggtttatgca      5040
     gatacaaaga ggaaagctaa ggaaagcaaa atcttggtgg gtgatagagt tcttgccaag      5100
     cgaatgaaaa aagataataa gttggatacc gtcttttcac cagaagaatt tgaagttata      5160
     cggaaggctg gtgctgatac catcatccga tctcatgtaa ccggaaagga gtatagaaga      5220
     aatgtagcgc accttagaaa acttgaatca gcaggcactc cagagaccgc agatgtttct      5280
     gcaggtcctt gtccatctac gtcggaattt ccagagacaa ctggcagaac aacgttagaa      5340
     aaaccatcat cagacaaaga agatccactt acgagaaggg cagcgagatc aagaaatgaa      5400
     ccaaagtatt tcaaggactt tatcccacat tagcagtcta aaaggtgggg agggt           5455
//
ID   Gypsy-84_AA-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   supercont1.15;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-84_AA_;
KW   Gypsy-84_AA-I; Gypsy-84_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.15; Positions 1929310 1929053.
XX
SQ   Sequence 258 BP; 80 A; 44 C; 72 G; 62 T; 0 other;
     tgtagggtcc tatcctctgg attacatcga gctgccaatc tataacaggg aatgatgtct        60
     gttagcgctg gcaacacagt aacgaggaga gagcttgagc cggggaggga cagggagtag       120
     agtgtgtgac gatgaacggt gcgaacgtga ctaccgccgc agtgttgctt taatgcaagt       180
     gaaataaacg attaagtcaa acggaaatta acagtgttta atttaatatt gtgaaaggct       240
     taaactgcga attcaaca                                                     258
//
ID   Gypsy-84_CQ-I repbase;    DNA;    INV; 5365 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-84_CQ_;
KW   Gypsy-84_CQ-LTR; Gypsy-84_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5365
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 547-547 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4490-4963] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..1680
FT                 /product="Gypsy-84_CQ-I_1p"
FT                 /translation="MHSRNHELAELSEWDLENVDLYYRRILNSTMMEQHRF
FT                 TFCTSNGQQYGQNSGQQYGQPPRPNLAPPYGTPFNGQPPFGQPYSTNPALS
FT                 VGRLVPRVPIPNPWNFPAPAAYPVPAGFGYISPYVPNIPPRMPGHVRFDTT
FT                 TANNSQNTAATGASTTNPGGGQGTTAGNNTPWPMDPLLGNGDHTNQNGGEN
FT                 GNEEETGNGNREESETNNSAVRSQLNRMTTTIGTLVNHVLAMERTQAAQQS
FT                 QLLSMMQGAVPYPPGTYQGPILPDGFNQGVDPNLFQYPNQWQANSTPLGGE
FT                 SAPNNPNIPEGYDGNYEVTRGFKTCEPPKPYFTGDLEVSHPMEFLLDIDRY
FT                 TFACRLDPACRLQLVTSCLEGEAKTWARGFGYLLHRLQPVLCTFPATVLGT
FT                 ARAASGSG"
FT   CDS           2543..5320
FT                 /product="Gypsy-84_CQ-I_2p"
FT                 /translation="MSKTANMNIISLNRIEAAVNRAATVETSGGTSPLFGS
FT                 SILTDAEQTQLEDLLREFEDIFSDKPGLAHQYEHEIRVTDDSGFNQKQYPI
FT                 PYKYMDKVRCQIQKMEEWGIISRAPTSYINPLVVTLKKSGEARVCLDARRL
FT                 NKVLERDNEKPPEVQRLLQKLEGTRYFSLIDLTSSYWQIPVKKEHRKFTGF
FT                 LFDQRSYVFNVLPFGLNTAVASFSRAMDFHLGPEVLQFTEKYLDDLLVHST
FT                 TFDEHLGHLRVLFTKLREAGLTVSPSKSEFAKHSVKFLGHVVGPAGVSVDP
FT                 EKLKAIEDFPCPTNEKALKSFLGLVSYVSRFTPNYAATAKPLYALLKSTVG
FT                 WKWERNEQDAFEATKQLFLTFTTLRYPITGKQFRVQTDSSYSGLGAILFQV
FT                 DERGNRMVISYASRLLQTAESNYSATELEALAVVWALNKWRQYLLGGSFVV
FT                 FTDHKALIFLKRCQLLNGRLTRWILFLQQFDFDIVHCRGAENEAADALSRY
FT                 PVGAIGLRSAGDGRKLLIARMAAEVKEFRKLMSKLPAQLASDSDWRAMWES
FT                 AGDVELRRGKRRYMKAKGVLFVKEERDEQWRIIIPRSLIETTLKYFHDDSG
FT                 HFGLQKTYQALRSSVFWKGMRKSAKEHVRACLTCQYSKPCLRPLCGSTRSI
FT                 LTKGPNELISVDLFGPLPAGPAGVRYVFVMIDVFSKYVTFDSVKKPTATVL
FT                 WRKLERRIQHLGKPSAVLCDQGTQFTAKFWRKTLKDNDIKLIFTSVRHPQA
FT                 NPVERSMRELSRLCRAYCQLNHRSWAQQLNRFADWINCAYHESTERTPHEL
FT                 QFGERPRDALQELFEYPGTGSSPVDIDKVYVMLRNKAKKRNRNAKPQTTFF
FT                 KVGDEVLLRSNPVSSEADAIVKKFINVYEGPYVIKEVVQTDVFILAYPNHN
FT                 KQRGMFHINLLKPFVTPNITGG"
XX
SQ   Sequence 5365 BP; 1440 A; 1365 C; 1418 G; 1133 T; 9 other;
     ttacaacgtg ggggctcaac cgggatcttg gccgatccca aacgctaatt tgttgctttt        60
     aatcggaaaa ctattgaact taaacagttc aaatacgaaa tatataaata aaaaaaaaat       120
     aatagtgcaa aaatcgcgaa atatctgcat tggtgcaatt cggacattgt ccgtagaaaa       180
     caaaggcggg tcgccattgc agtcgaggaa agcacatggt tggcgaggca gctgaaatat       240
     agatacaagg ctttgcgaaa gcctaaaata gctacctcga gtcggatcga cattaattgc       300
     cctgcgagtc agccgcacga atttagaatt gacattggaa acgaacctaa caccggccgg       360
     cacgattgaa gttgtttaaa ggcttgcgaa agcctcaagg aggtgagtag cgttccttca       420
     atgtttacct ttcttggttg agctgctggg tcttacgcat tccaggatcc ccgtatgcat       480
     agccgtaacc acgagttggc cgagctgtcc gagtgggatc tcgagaacgt agacctgtac       540
     taccgccgca tactgaactc aacaatgatg gaacagcacc ggttcacgtt ctgcacttca       600
     aacggtcaac agtatggcca aaattcgggc cagcagtacg ggcaaccgcc acggccaaac       660
     cttgcaccac cgtacggtac accattcaat ggtcagccac cgtttggtca accgtactcg       720
     acgaatccag cgctttcggt gggtcggttg gtaccacggg ttccaattcc taatccctgg       780
     aacttccctg cacctgccgc ttaccccgtg ccagcgggct ttgggtatat cagcccgtat       840
     gttcccaaca taccgccgag aatgccgggt cacgttagat tcgacactac gaccgccaac       900
     aactcacaga atacggcggc taccggagca tcgactacta atcccggcgg aggtcaagga       960
     actactgctg gaaataatac accttggccg atggacccct tgctgggaaa tggtgatcac      1020
     accaaccaga atggtggaga gaacgggaac gaagaagaga ctgggaacgg taacagagag      1080
     gagagcgaaa caaacaactc ggcagtgcgc tcgcagctta accgaatgac caccacgatc      1140
     ggaacgctcg ttaaccatgt actagcaatg gaacgtacac aagcagcaca acagtctcag      1200
     ctactgtcca tgatgcaggg agcagtcccg tacccgcccg gaacctacca aggacccatc      1260
     ctcccagatg gtttcaatca aggggtcgac ccgaatctct tccagtaccc taatcagtgg      1320
     caggcaaatt ctacaccttt aggaggagag tcggcaccga acaaccctaa cataccagag      1380
     ggttacgacg gaaattacga agtgaccaga ggcttcaaga catgtgaacc gccaaaaccg      1440
     tattttactg gtgatctaga agttagtcac cctatggagt tccttctaga catcgaccgg      1500
     tacacttttg cttgtcgatt agacccagcg tgtcggcttc aacttgttac ttcctgccta      1560
     gaaggggagg ccaaaacgtg ggcaagagga ttcggctacc tcctacacag actacaacca      1620
     gttctgtgta catttcctgc aacagtactg gggacagcgc gcgcagcgtc tggttcggga      1680
     tgaaatgatg tacggaacgt actcgagcaa gtccacttcg agaatggccg agtacttcct      1740
     gggtttggta gcgaaggscc ggtacctggt aggcgcacct tcggaagtag agcttgtctt      1800
     gaacttgagc caccattttc cccgaaatgt ctgctctcga ctcagctcct gcccggacat      1860
     caagtcggct tactcgatgt tgcagatcga agatcaccac aacaacaaca cgcaaaggac      1920
     taactggaaa cggacmccag aaggwgcmaa caacacggcg gcggtggcta gcggtggcag      1980
     cggaacaggt ggcaacagtc gcaattggag agacgccggt agcaacaatc gggctgtacg      2040
     agctaccacc gctgaagcgg acgacgacgc agaaccggag actcatccca tcgctaatat      2100
     ttttgttgga cccgaagagc tgctggcgga ggacaacgtc gacaactcat gcgtgaaagt      2160
     ggaaaaatcg ccagtcatcg aggtgttgat tggcgagcga ccgatgctgg ttttgctgga      2220
     tagcggcagt gaactcagct gcatcgatgg taacctctac cgagaagtta aggcgattgg      2280
     agttgagatg tgtgagctgc cggtgcaaaa gacgaccata caaggggctt ttggagggaa      2340
     gaaaaagacc atctccaatc agattttcct acctctttac atcagcgggg aagccgtcga      2400
     tgtaccacta atcgtcgttg aagacttgtg cagtcccatg atatttggca tggacaccct      2460
     tcaccacctc caagcttscc tcttgttcaa cacaaagagg tatgcttggt gttgaacgam      2520
     aaagaagtaa agctcccstt caatgtccaa gacggccaac atgaacatta tttccctgaa      2580
     ccggatcgaa gctgccgtca acagggccgc aacggtcgag acatcgggag ggacttcacc      2640
     actcttcggc agttcgattt tgactgatgc tgaacaaaca caactggaag acctgctgcg      2700
     agagttcgaa gacatattct ctgacaagcc ggggctagct caccaatacg aacacgaaat      2760
     ccgagtgacc gacgattctg gctttaacca gaaacagtac cctataccct acaaatacat      2820
     ggacaaggta cgatgccaaa tccagaagat ggaagagtgg ggcataatct ccagggcgcc      2880
     aacgtcgtac atcaacccac tcgtagtcac gctaaagaaa tccggagaag cacgggtatg      2940
     tttagatgcc cggagattga acaaggtgct agagcgggac aacgagaagc ctccggaggt      3000
     tcaacggctg ctgcagaaac tcgagggaac acgatacttc tcgctgattg acttgaccag      3060
     ctcctactgg caaatccccg ttaaaaaaga gcatcgcaag ttcaccggkt tcctgtttga      3120
     ccagagaagc tacgtgttta acgttctacc gttcggcttg aacacggccg tggctagctt      3180
     ctcacgagcc atggacttcc atttgggccc ggaagtcctc cagttcacgg aaaagtattt      3240
     ggacgacctg ctggttcact caacaacatt tgacgaacac ctgggccact taagagttct      3300
     tttcacgaaa ctgcgcgaag cgggactcac agtcagccct tcgaaaagtg agttcgccaa      3360
     acatagcgtc aaattcttgg gtcatgtggt aggtcctgct ggcgtttcgg tagacccaga      3420
     aaagctcaag gccatcgaag actttccctg tcccaccaac gagaaagcac tgaaaagctt      3480
     tttgggcttg gtgagttacg tgtccaggtt cactccmaac tatgctgcca ccgcgaaacc      3540
     actttacgct ttgctgaaat ctacggtcgg ttggaagtgg gagaggaatg aacaggacgc      3600
     gttcgaagct accaagcagc tgtttctcac cttcactacc ctgcggtacc cgataaccgg      3660
     gaaacagttt cgtgtgcaaa ccgacagctc gtacagtggt ctgggtgcga tcctcttcca      3720
     ggtggacgag agaggcaacc ggatggtgat ctcgtacgcg agccggttac tgcaaacggc      3780
     tgagagtaac tactctgcga ctgagctaga agcgcttgcg gtggtatggg cactaaacaa      3840
     gtggagacaa taccttctcg gaggcagctt tgtagtcttc accgaccaca aggccctcat      3900
     ttttctgaaa aggtgccagt tgctgaacgg ccggctgacg cggtggatac tgttcctgca      3960
     gcagttcgat ttcgatattg tgcattgtcg cggcgcggaa aacgaagccg cggacgccct      4020
     ttcacgttac ccagtgggag ctatcgggct acgaagcgct ggtgacggca gaaagctatt      4080
     gatcgcgcgg atggctgctg aagtgaagga gtttaggaag ctgatgtcaa agctcccagc      4140
     tcaacttgcc agtgacagtg attggagggc gatgtgggaa tctgctggtg acgttgagct      4200
     gcgacggggc aaaaggcggt acatgaaggc caagggagta ctgttcgtga aggaagaacg      4260
     tgatgaacaa tggcggatca tcatcccccg aagcttgatc gaaaccaccc tgaagtactt      4320
     ccatgatgac tcgggtcatt ttggtttgca aaaaacgtac caggccctgc gtagttcggt      4380
     gttctggaag gggatgagga agtcggcgaa agagcacgtt cgcgcatgcc tcacttgtca      4440
     gtactccaaa ccttgcttga ggccgctgtg tggttccact agaagcatcc tgacaaaagg      4500
     accgaatgag ctgatctccg tcgacttgtt cggacctctg ccagctggac ctgctggagt      4560
     ccgttacgtg ttcgtgatga tcgatgtctt ctccaaatac gtaacgtttg acagtgtgaa      4620
     gaagccaacg gctaccgtac tgtggcgcaa gttggaacgg cgcatccaac acctcggaaa      4680
     accgtcagca gtactgtgcg atcaaggaac tcaattcacg gcgaagtttt ggagaaaaac      4740
     gctcaaggac aacgatatca agttaatctt tacctcggtg cgacatccac aagccaaccc      4800
     agtggaacga agcatgcgag agctgtccag attgtgccga gcatattgcc agctaaatca      4860
     ccgatcctgg gctcagcagc tgaatcgttt tgccgactgg atcaactgtg cgtaccacga      4920
     gtcgacggag cgaacgccac acgagctaca atttggagaa cggcccaggg acgcgctgca      4980
     ggagttgttc gagtaccctg gcactggtag cagccccgtg gatatcgaca aagtgtacgt      5040
     gatgctgcga aacaaggcaa agaagcggaa ccggaacgca aaaccacaaa cgacgttctt      5100
     caaagtagga gacgaggtgc tgctgaggtc gaatccggtc tcgtcagaag cggatgccat      5160
     tgtgaagaag ttcatcaacg tttacgaggg accgtacgtc attaaggagg tagtacagac      5220
     ggacgtgttc atcctggcat acccaaacca caacaagcaa cgaggtatgt tccatattaa      5280
     cctgttgaag ccattcgtta ctcccaacat caccggaggg tagccgcaaa cttttttacg      5340
     tagagcgttt gctgaggggg ggagt                                            5365
//
ID   Gypsy-84_CQ-LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-84_CQ_;
KW   Gypsy-84_CQ-I; Gypsy-84_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-230
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 548-548 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 230 BP; 81 A; 32 C; 56 G; 61 T; 0 other;
     tgtaatgagc gctaacaacc ctggagtgga tatgggagaa ggtgaggaag aggatgggaa        60
     gattgaatta gttggtaagt gaagccaatc gctatcagaa gctcgaagaa ttaaatcggc       120
     taataaattt gtttgaaatc gcgcaataaa gagtttttcc taaaatgtgt gattcgctaa       180
     tgatttgctc cgaatactcg ctaaaacagt gctaaaacaa gtaatttaca                  230
//
ID   Gypsy-85_AA-I repbase;    DNA;    INV; 6852 BP.
XX
AC   supercont1.248;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-85_AA_;
KW   Gypsy-85_AA-LTR; Gypsy-85_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6852
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.248; Positions 1437207 1430356.
XX
CC   Positions [5211-5687] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1731..2879
FT                 /product="Gypsy-85_AA-I_3p"
FT                 /translation="MRSLSTKSNKKRHRKVSFSSISTSSSTTSSSQTTSSS
FT                 EVSSEDTSESSSSTSRSAERRRERHKKERKARQSLRRIPVSEWKLKYDGRD
FT                 QGRKLAEFLKEVKMRCKSEDVSDKELFRSAIHLFTGRAKDWFMEAYENHDF
FT                 HSWSGLKRELKREFLPPDLDFQIEIQATGRRQARGERFVDYMHDMQKLFQS
FT                 MTKPISERRKFEIIWRNMRFDYKNALTGAGVKSLSKLKKYGRIIDENNWNM
FT                 FQKPSESSNRPKTHQLNEISASNNSKSKPTFSQPENTRTFFKSKPKSKTDN
FT                 EHSKQEEQKNEKGERNERKENPIEGSSKGTLKALAEKYVRPPIGTCYNCRK
FT                 HGHHYGDCSEKRQKFCRLCGFLDVITPECPFCQKNEQNSA"
FT   CDS           2813..4765
FT                 /product="Gypsy-85_AA-I_2p"
FT                 /translation="MWFLGRHYAGMPFLPKKRAEFSLRRQAEASTLNPSKD
FT                 DRLYKDLLQNGYKPFSDDDYVPEVEVNELFVKVDGDNRPFAKVHVMGREMI
FT                 GLLDSGAQRSILGIGCKKLVKSLNFKIFPTDVSLKTVSGTPVEVEGYVHLP
FT                 VTFNDETKIIKALITPNLPRRLILGYDFWRVFNLHPTVQFEHCELREEMER
FT                 EGFGNEETREEEGGNEQELLTEEQKLKLEQVKQLFKFAIEGEVLGVTPLIS
FT                 HKIELKEEFEKAPLVRINPYPTSPAMQQKINHELDNMLRQKVIEPSKSDWA
FT                 LSTVPVLKPSGDVRLCLDARRLNDRTRRDAYPLPHQDRILSRLGSSRYLTT
FT                 IDLTKAFLQIPLDPSSRKYTAFSVLGRGLFQFTRLPFGLVNSPATLARLMD
FT                 EVLGYGELEPSVFVYLDDIVVVSSTFEAHIQSLTEVARRLRLANLSINLDK
FT                 SKFCLRELPYLGYIISSDGLRPNPDRVSAIINYERPTSLRALRRFLGMSNY
FT                 YRRFIPRFSEISAPLTNLLRKNPKTIVWNTTAEKAFLELKENLIAAPVLAN
FT                 PNFQLPFQVQTDASDSAIAAILTQQHESGEKVVAYFSQKLSPAQQAYAASE
FT                 KEGLAVLSAINKFRPYIESTRFVVITDASALTHEWEVAHVVTPQPMEHRAA
FT                 GF"
FT   CDS           4704..6080
FT                 /product="Gypsy-85_AA-I_4p"
FT                 /translation="MNGKWRTSSRLSRWSIELQGFDFEIRHRRGKDNVIPD
FT                 ALSRSIEIATLSEGDAWYSSLYDKVRSAPDENVDFKIEEGKLYKFVPSKTE
FT                 VLDFRFEWKLCVPEKSRDEILRKEHDEAFHIGYEKLMDKIRTRYFWPKMAT
FT                 TIRRYVERRRTCKECKPTTISQHPVMGNPRLARKPFQMLAIDFIQSLPRSK
FT                 AGHTHLLVLLDVFSKWTVLVPVRKIATDLIIKIIEEQWFRRFSVPEILISD
FT                 NATSFLSNAFKDFLSRYQVKHWANSRHHSQANPVERLNRSINACIRTYVKT
FT                 DQRLWDTRISEVEHTLNNTSHSSTGLTPYMIVFGHEIVSEGTEHLRDPDTS
FT                 DVSESERAERKLKVDDQIQRIVRQNLAKDHDKSTRAYNLRFRKPAPVYQVG
FT                 QNVYKRNFSQSVAGEAYNAKLGPAYTPCTVVSRRGTSSYELIDNQGKNLGI
FT                 FSSADLKPGVPDEE"
XX
SQ   Sequence 6852 BP; 2198 A; 1311 C; 1582 G; 1761 T; 0 other;
     attggcgacc aactaaaatc gaagctaatc aagagttcaa aaaggtgcta cattgttcta        60
     tcaagtgtgc atgataggtt agctaggtta cggcaagtga taaggtttga gtgtttcaat       120
     ggtaatgctt tagcttttgg ggatcgtttc ggagttcatt aagccatctt actagtgcgc       180
     gtacactcac aaaagttgat attctttgtt ttttttttta ccaaccagcg ggagtgattt       240
     tgcgtttaat tgaatgatag ttatggttat tgggtcttga ttcttctaaa tgatctgagc       300
     aacgaatgtt tcggatcaaa acgactgaaa ttgtttggtt tgatgaatga ttttgtcgac       360
     gctctcaatt ttgagtgatt aattagcaat tttcaaataa cttcttcgtg atagatcatt       420
     taggtatttt ttcaattgct tcttcgtgat agcacaatta gttttattca atagcttctt       480
     cgcgatagct caactaggtt ttttttttca attgcttctt cgtgatagct gtattaggta       540
     gtttttcaaa tagtatcttc gtgattactc aattaggtat tttattgtaa ttaatcggta       600
     tttgatatgg atttacaaaa gctttataag aggatggacg tgtctcatct ttccatggat       660
     gaggttgaac gtgaattaca tgtgagaaac atggtattcg gaccggatga acatgaaagc       720
     attaaacgga gaaagttgaa agatagaatg aagtacgaac gcgaaaagaa tatttttgtt       780
     gccgctccta tttggagaac ggtacctgaa gagattgaga tagtgagggc taagcttttg       840
     gtcatcggag gattgttgga caatccaaaa accgatgctc gccagagaga aaagctgtgt       900
     actcgactgg tgcattatag agtgcgaata tacatgatat ataaatcgcc tggatcggat       960
     aaactcacga aagagataac cgatcttggt aaactagcta gtcagatttt tcgaaaacat      1020
     tttcccgaga tggaatctag ctctgaagcc caacccgaac ccaaacgttt agaatcagaa      1080
     attgatcaag ttctagagga agtcagaagc gaaatagaag ttttaaatgt aacagctaca      1140
     ggtaatgact tggaagagcc ggtcgtggaa gagggagcaa gtgggggtgt aaagaagaag      1200
     acaattgagt ctaaaaagca ggagctagag gcatcaatga ttcgatgtga tgaaattttg      1260
     ggggtgttaa caggatatga ggaaggaaag caggaaagct taaaagatgt aatccaacat      1320
     ttcaaaaatt ttgttttaca caccacgaag caacagaagg aaatgagaga aagagaaatc      1380
     gctttagaag agaaacgtat gaaagaagct gaggagaata tagagcggaa aaaaagatta      1440
     gaaaagcttc ttatcaaact aaatgatcag ataaagttta atcaggagag aattgataga      1500
     gagtcagaaa taaaccctga gaaggtagat acgggaaagg ggtcatttga accggatggc      1560
     aaaaatgacc aagtattaaa atcaagtaaa gaagaagata taacgatcgc tgaacagcaa      1620
     tcgtttgaag agagtagttc tgaaagtccg cttgaggtgt ttcggaaaca taaagcagta      1680
     gaaagcaagg aaaggagaaa aagaaggagg ggaaaaagga gaaaagtaac atgagatcat      1740
     tatccacgaa gtctaacaaa aagcgccatc gaaaggtgag cttttcctca atttcgacaa      1800
     gcagtagtac aactagtagc tcacaaacta ctagtagctc agaagtttca agcgaggata      1860
     cttcagaaag ctcgtcgagt actagtagat cagcagaacg tagaagggaa aggcataaga      1920
     aggaacgaaa agctaggcag agtttgaggc gaattccagt ttccgaatgg aaactaaaat      1980
     atgacggaag ggatcaggga cgaaagttgg cagaatttct gaaagaagtt aagatgcggt      2040
     gtaaatcgga agacgtatcc gacaaagaac tttttcgtag cgcaatccac ttatttacag      2100
     gacgagctaa ggactggttc atggaagcat acgaaaatca tgacttccat agctggtcag      2160
     ggttgaaaag ggagctcaaa cgagaattcc taccgcccga tttagatttt caaatcgaaa      2220
     tccaagccac tggtcgtcga caggctcgcg gtgaaagatt cgtcgattat atgcatgaca      2280
     tgcagaagct ttttcagtcg atgacaaagc cgatttcaga gcgccgcaaa tttgaaatca      2340
     tctggcgaaa tatgagattc gactataaaa atgctttaac tggagcgggg gtgaaatccc      2400
     tatccaaatt aaagaaatat gggcgaatca tagatgagaa caattggaat atgttccaga      2460
     aaccgagcga aagctcaaat cgtcccaaaa ctcaccagtt aaatgagatc tcagcctcaa      2520
     acaactcgaa atctaagcca acttttagtc aacccgagaa tacgcgaact ttttttaaga      2580
     gtaagccaaa aagtaagacc gataatgagc atagcaagca agaggagcaa aagaatgaga      2640
     aaggggagag gaatgagagg aaggaaaatc cgattgaggg gtcgtctaag ggaacgttga      2700
     aagctttagc tgaaaaatat gtgcgcccac cgataggcac ttgttacaac tgcaggaaac      2760
     atgggcacca ttacggcgat tgctcagaaa agagacaaaa attttgtagg ctatgtggtt      2820
     tcttggacgt cattacgccg gaatgccctt tctgccaaaa aaacgagcag aattcagctt      2880
     gagaaggcaa gctgaagctt cgactctaaa tccttcaaaa gacgatcggc tatacaaaga      2940
     cctattgcaa aacggttata aaccattttc ggatgacgat tatgtccccg aagtggaagt      3000
     taacgagctt tttgttaaag tagatggaga caaccgtccg tttgcaaaag ttcatgtgat      3060
     gggaagagaa atgatcgggt tactggatag tggtgctcag cgctctatac taggaatagg      3120
     gtgcaagaaa ctggtgaaat cgctgaactt caaaatcttt cctacggatg tatctttgaa      3180
     aactgtttct ggaactccag tagaagtaga aggctacgta cacctaccag tgactttcaa      3240
     tgatgagaca aaaatcatta aggctctgat cactccaaat ctcccacgta gattaatact      3300
     cgggtatgat ttttggagag tattcaatct tcaccccact gtgcagttcg aacactgcga      3360
     gttgagggaa gaaatggaaa gagaaggatt tgggaatgag gaaactagag aagaggaagg      3420
     aggaaatgag caggaacttc taacagaaga acaaaaatta aaacttgagc aagtaaaaca      3480
     actcttcaaa tttgcaattg aaggagaagt tctcggagta actccactca tctctcacaa      3540
     aatagaactc aaagaagagt tcgaaaaagc gccactggtg agaatcaacc cctatcccac      3600
     gtcccccgct atgcaacaga agattaacca cgaattagat aatatgctca ggcaaaaagt      3660
     tatagaacca agcaagagcg attgggctct tagtacggtt cctgtgctta aaccttcggg      3720
     cgatgttcgc ctgtgtctgg acgcacgacg gttaaatgat cggactagga gggacgctta      3780
     tcctctacca caccaagatc gaatattgag taggctaggg tcaagtcgat atttaacaac      3840
     aatcgattta accaaagctt ttttgcagat cccgcttgac cctagctcac gaaaatatac      3900
     ggcgttctcg gtgttgggca ggggattgtt ccagttcacc cgattaccct ttggcctagt      3960
     caacagtccc gccacgctgg caagactaat ggacgaagtt ttagggtacg gtgaactgga      4020
     accgagtgtg ttcgtttacc tcgacgacat cgtcgtggta agcagcacat tcgaagcaca      4080
     catccaatct ctgaccgagg tggcccgtcg attacgattg gccaacctct ccatcaacct      4140
     cgacaaatca aaattttgtc tgagagagtt accctacctc gggtacatta tctcatccga      4200
     cggtttgcga ccaaaccccg atcgcgtatc ggcaataatt aattatgagc gcccaacatc      4260
     acttcgtgct ttacgtcgat ttttgggaat gtcgaattat tatcgacgct ttattccccg      4320
     attcagcgag atttcggcac ctcttaccaa tctcctgaga aaaaatccta aaacgatcgt      4380
     atggaatacg accgcagaga aagctttcct tgaactaaag gagaatttaa tcgcagcacc      4440
     agtgctcgca aatccaaact tccagctgcc cttccaagtt cagaccgatg cgagtgacag      4500
     tgctattgct gcgatcctca cacaacagca cgagagtggc gagaaagtgg tggcatactt      4560
     ctcgcaaaaa ctctctccgg cacagcaagc atatgcagcc tccgagaagg aaggtctagc      4620
     ggtgctatct gcaatcaaca aattccgacc gtatattgaa agcactcgat ttgtcgttat      4680
     taccgacgct tccgcactca cccatgaatg ggaagtggcg cacgtcgtca cgcctcagcc      4740
     gatggagcat cgagctgcag ggttttgatt ttgaaattcg gcatcgaaga gggaaggaca      4800
     atgttatccc ggacgctctc tcgcgttcga tagagatcgc cacgctgagc gaaggggacg      4860
     catggtactc ctctctatat gacaaggttc gctctgcgcc ggatgagaac gttgatttta      4920
     agattgaaga ggggaagttg tacaaatttg taccgagcaa gaccgaagtc ctcgattttc      4980
     gtttcgaatg gaagctttgt gttccggaga aatcacgaga tgagattctc cgaaaagagc      5040
     acgatgaagc gttccatatt ggttacgaaa aactgatgga caaaattcgc actagatatt      5100
     tctggccgaa gatggccacc acgattcgca gatacgttga gcgacgccga acttgtaaag      5160
     agtgcaaacc cactacaatc tctcagcatc cagtcatggg aaacccacga ctagctagaa      5220
     aaccttttca aatgttggcg attgatttta ttcaatcatt gccgcgatct aaagctggcc      5280
     atacccacct tctggtgttg ctagatgtct tttcgaagtg gactgttttg gtccctgtga      5340
     gaaaaattgc gacagatctt attattaaga ttatcgagga acagtggttc cgccgcttct      5400
     ctgttcctga aatcctgata agcgataacg caacaagctt tctcagtaac gcttttaagg      5460
     acttcctgtc tcgctatcag gtgaagcact gggccaactc ccggcatcac agccaggcca      5520
     acccggtcga acgtttgaac cggagtataa acgcttgtat ccgaacatac gttaaaaccg      5580
     accagcgttt gtgggatacg agaatctccg aggtagaaca cacacttaac aatacgtcgc      5640
     attcgtctac gggtctcacc ccgtatatga ttgtgttcgg acatgagatc gtttccgagg      5700
     gtacggaaca tcttcgtgat cccgatactt ccgatgtgtc tgaatctgaa agagcagaga      5760
     ggaaattaaa agttgatgat caaatccaga gaatagtacg ccaaaactta gccaaagatc      5820
     atgataagag taccagagct tataatcttc ggttccggaa acctgctcca gtatatcagg      5880
     tgggacagaa tgtttataag cgaaactttt cgcagtcggt ggctggagaa gcctataatg      5940
     caaaattagg tccagcttat actccatgca ctgttgtgtc tcgccgaggc acaagctcat      6000
     atgagcttat tgacaatcaa ggtaagaatc ttgggatatt ttcgtcggcg gatttgaaac      6060
     ccggtgtccc cgatgaagag taatgtttgt ccaattccac tgtcaattta gagtctatac      6120
     gtccaaaaat tccaatgttg tgtccagaat tgtgtagagc cttcgtaagt caaagtacgt      6180
     aaataagatg atcgtcggtt attgtgagtt gtacagcaaa tattgtgtaa gtgaaatagc      6240
     gaatctgttg gtttagaatg tctggccgtt cagaaaacaa tttatgtatt gctgtcccgt      6300
     ttcgtctaaa atagaataat agtccatcat tattggttga agcagaagcg acagggaaat      6360
     ttaaccgatc aaggattaaa acaataacaa atgaaaaatt tctagatcgc gatgtgcagt      6420
     agctatggat ccgatggggc agatcaagtt atgataaaac actcctagtc aattacctca      6480
     atttatcaca ccacacctaa attatggttc tcagttcggc aagaatatca ttcgtaaatc      6540
     aaaccatcag gagatttcgt tttggtagaa agaaaaaaaa ttacctcttc ctcgaaacaa      6600
     gcaaatgttt cggccattgg gagatgaata gattgactaa ccgttccgcg aatatgaaat      6660
     tgcattaaca aagtcccttt ttttaaataa ggcaactgtt tgttgaaaag atgcgattta      6720
     tatcattttt tgggaatttt cgagagcatt aaagttgcga ctcaaccctg agatgactat      6780
     aaatgaaccc aacaagtgaa aaattaatcc aaaactttgt tttgattaat tttgaggggg      6840
     gagatgaggt ag                                                          6852
//
ID   Gypsy-85_AA-LTR repbase;    DNA;    INV; 1172 BP.
XX
AC   supercont1.248;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-85_AA_;
KW   Gypsy-85_AA-I; Gypsy-85_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1172
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.248; Positions 1430355 1429184.
XX
SQ   Sequence 1172 BP; 407 A; 261 C; 222 G; 282 T; 0 other;
     tgttaccgtt ggggcataaa atccaaatca ctatgccgaa taaaaataga aacctgagat        60
     atatttaatt tgtcagtgtg ttaaaattgt tagtcactta aagctatata aaacaagaac       120
     tatgtatata ctaaatgtaa ttaaaactta taagaaacct ttaaaatgag catgcacatt       180
     taatatgtta gtaaaattaa ataaaattat taaaaaggaa attataattg ttaaacataa       240
     caaaatttgt aaaacacatt tagtacatta cacacaacac actaaaatct gctgcagggg       300
     aaacttttga ggagttgtcg cgagttgagg aaaggactgg caaaaagaga tggaaaaggg       360
     aatttgatat ggaaagggta ggctactggg gaaattaaaa agctggctcg gtctctttcc       420
     taaagtgaac gccaaagcta tcagacgcta gattttagct gaagctataa aaaaagctaa       480
     actttaactt tttaaaggaa aaccaccagt ggcactaaat acaccgtatt aacacggtaa       540
     aataagtgaa tcaggtatgt tattttacca attaagaata attaccaagc aaaataccca       600
     gtagcccatg aacctaaccc taaaccaacc ataacccttt cacaccatta ggacccaata       660
     gtgctttgca caaaagcttt ccagacgcca agcaagaatt tggatctggt atagcctgag       720
     gaaccggata tcaccccgtt tggtccacga tctcatcgta ttgagccaac aggacatcga       780
     gcacgctaca ctgtacgatt tccaccccat cgtcggtcga aggccattcc cgacaggaat       840
     tcaaccctcg aggacccgac attccgtcca gagtggagca accacgtacc gcctaggtcg       900
     agacaggcca cgtgaacctc tcgcatcctc ccaaaagtga ctcactcacc ccagcaacag       960
     cagtaagcgc cggccggcca tcacatcacc taacacccaa acagatcttg tgagtagtac      1020
     cgaaataaaa ttgtgaaacg tatttagagt gttgcctttt gattgagccc ttggttagcc      1080
     tctcgaatag ccgatcctga gagcaaaaag ctcacgctct agctcgccgg tactcaggtc      1140
     ttgctgaggg gtcatccgac tcccaagtaa ca                                    1172
//
ID   Gypsy-85_CQ-I repbase;    DNA;    INV; 5081 BP.
XX
AC   AAWU01006083;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-85_CQ_;
KW   Gypsy-85_CQ-LTR; Gypsy-85_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5081
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 549-549 (2011).
XX
DR   GenBank; AAWU01006083; Positions   31634   26554.
XX
CC   Positions [4103-4570] - Integrase core
CC   'CCAAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           796..2829
FT                 /product="Gypsy-85_CQ-I_1p"
FT                 /translation="MFVRRHLECRIFIELAKAVVIQVNLKRSLIGVIVFFQ
FT                 MEDARPVPQFRCEEIEKNRLYNEWKIWKRALECYFDAYDIKDQKKMRAKLL
FT                 HLGGPQLQRVFENLPDRENFPVVSTKKKKWYTVAINALDGFFQPCRQDCLE
FT                 RHKLRQLRQKEGERFADFLLRLRQQVADCGFEKYAPETKNVLVEIFLIDVI
FT                 VEGCTSPELRRRILQQDRTLSEIETLGVALEGAELQVKDFNAKPVEPVTEQ
FT                 KAFKVTVRPKPFQPAYHNSGNFARNKASPYPQRVIRCFSCGRPDHLSTDRN
FT                 CPARNIRCRKCKQMGHYEPYCRQREKKFIRRQDTHQDTASSRKVHLVEETK
FT                 VKAEAEQHNGSTKTYYTFFSGNETNVVLCTVGGVELDLLVDSGSDVNLIPD
FT                 TVWESLKQKSVEVRQCVKGCTKVLKAYASNSPLAILGSFVAEVKVGQRAVQ
FT                 AEFHVVAGGQRSLLGDRTSKELRILRIGVDVCSVASAMEPFTKIKDVQVQI
FT                 LMNPEVKPVCQPIRRVPIPLEDAVNKKLDQLLAKDIIEVKHGPAPWVSPLV
FT                 VVGKSNGEPRICLDLRRVNEAVLRERHPMPVVDDYLARLGKGKYWTKLDIK
FT                 DAFLQVELAPESRDITVFITNKGLFRFKRLTFGLVNAPECFQKVMDQILVG
FT                 CEGAFWYLDDVIIEGSRREELEERVAKVM"
FT   CDS           3170..5050
FT                 /product="Gypsy-85_CQ-I_2p"
FT                 /translation="MLTRKDSKFVWSVVHQTAFDRIKDAIADVMKLGFFNK
FT                 DQRTTVMADASPIGLGALLIQTDDAGNSRVVTCASKSLTDTERRYCQTEKE
FT                 ALSLVWAVERFQMYLYGRRFDILTDCKALVYLFTERSRPCARIERWVLRLQ
FT                 AFEYLVSHIAGNRNLADVLSRLSTIVPVPFDIREELFVRQISLSAATAVAL
FT                 RWEEITKASLEDPEIQDVLECIDNGNIYQMPIAYRVVANELCRFGDVLLRT
FT                 DRIVVPTALRERVVCIAHEGHLGIRTMKAHLRSAAWWPKMDMAVESYVKRC
FT                 RDCLLVSSPDPPEPMVRKELPSGPWEDIAIDFLGPLPNKETLLVVVDYYSR
FT                 YVEVCEMKSTTAKETIAQLSKIFCRFGVPNTMRADNGPQLNASCEEFTNFC
FT                 GEVGVRLVNTIPYWPQHNGEIERQNRSFLKRMKIAHEAGRDWRMELNKYIL
FT                 SYHATPHPTTGRSPAELMFGRKIRSKLPQLPREASFDEEVRDHDKLQKEKG
FT                 RVYADTKRKARTSEIEVGDRVLAKRMRKDNKLSSDFGPEEFEVIRKSGADV
FT                 TVSSAQDGVQYRRNVRHLKRILKGSEDQTFHPASGDEGQDESGSTEYPINH
FT                 EEQNTSFEQAASSKRARREPTKFRDYVAH"
XX
SQ   Sequence 5081 BP; 1334 A; 1054 C; 1412 G; 1281 T; 0 other;
     attctggcga cgagggtgaa ctaaaggtga gctaatttgt tcgattttaa gaatgttaga        60
     acggtttttc tggtcgcttg aggtttgcca agatggctgc ctcgggctga agatgccgat       120
     ttcttcacat aaaggtgtgt tggtgtgttt tcaaaaagaa ggggggagag agagacgtaa       180
     atgtattcgt tttctctccc tggtgtagac agcagactct gagtgacgga atgtcattcc       240
     ttggagtgcg tttagtgatg caatcaattc aaagctctgt ttttatttta ttgttgacgt       300
     atgactacaa cgttttgacg taggataaga atttggtgtt tattttaaat agtttgattc       360
     ctgatgcttt tcagggagtg gacaaaacga ttgttcacgg gtagaatgtc cctgtaacag       420
     tcgttacagg tggtggacat acgttgttca cgggtagaat gtccctgtaa cagtcgttac       480
     aggtggtgga catacgttgt tcacgggtag aatgtccctg taacagtcgt tataggtggt       540
     ggacatacgt tgttcacggg tagaatgtcc ctgtaacatt agttacaggt ggtggactta       600
     gttgttcacg ggtataatgt ccctgtaaca atcgttacgg gtggtgaatt gaagttcttc       660
     acgggtagaa tgtccctgta gctgtcatta caggtggtga acatattgtt gttcacgggt       720
     agatgtcctt gtaatatttt acaagtggtg acaacaattt gttgttcacg ggtgtttctg       780
     tgacgggtgt tacagatgtt cgttcgtaga catttagaat gtcgaatttt tattgaatta       840
     gcaaaagctg ttgtaataca agtgaattta aaacgatcat taatcggagt tattgtgttt       900
     ttccagatgg aggacgctcg gccggtacca cagtttcgct gtgaggagat cgagaagaac       960
     cgtttgtaca acgagtggaa aatttggaaa agagctctcg agtgttattt tgatgcgtac      1020
     gacattaagg atcaaaagaa gatgcgggct aagcttcttc atcttggagg accacaacta      1080
     cagcgcgtat tcgaaaacct acccgatcgt gagaattttc cggtggtatc caccaaaaag      1140
     aagaaatggt acaccgtcgc aataaacgct ctcgacggtt tctttcaacc gtgtcgtcaa      1200
     gactgtttgg agcggcacaa gctaagacaa ctgagacaaa aagagggcga aaggtttgca      1260
     gattttctgc tgcggttgcg ccagcaggtg gctgactgcg ggttcgagaa gtacgctccg      1320
     gaaacaaaga atgttctcgt ggagatcttc ttgattgatg tcatcgtcga gggttgcaca      1380
     tcgcctgagt tgcgtcgacg gattctccag caagatcgta cgctgtccga aattgaaacg      1440
     ctcggagttg cgttggaagg tgctgagctg caggttaagg actttaatgc taagcctgtg      1500
     gaacccgtca cggagcagaa ggcgttcaaa gtcacagtta ggccaaagcc ctttcaaccg      1560
     gcctaccaca acagcgggaa ctttgcacgc aacaaagcat ctccataccc tcaacgggtt      1620
     atccggtgtt tcagttgcgg aagacccgac cacctgtcca ctgaccgaaa ctgcccggcg      1680
     aggaacattc ggtgccgcaa atgtaaacag atgggacatt acgaacccta ctgtcgtcag      1740
     cgagagaaga agttcatcag gcgacaggat acccaccagg atactgcatc atctcggaag      1800
     gtgcacctgg tcgaagaaac gaaggtcaaa gcggaagcgg aacaacacaa cggctcaacg      1860
     aagacttatt acacgttctt ctccgggaac gaaacgaacg ttgtgctttg caccgttggc      1920
     ggtgttgaac tcgacctgct cgttgactcc gggtcggatg ttaacctgat tccagatacc      1980
     gtatgggagt ccttgaagca aaagtcggtg gaagttcgtc agtgtgtgaa aggatgcacg      2040
     aaggtgttga aagcttacgc gagcaactcc ccgttggcaa ttctcggttc atttgttgct      2100
     gaggtgaagg ttggacaacg agcagtacaa gcggagttcc atgttgttgc tggaggtcag      2160
     cgatctcttc tgggtgatcg cacatcgaag gagctgagga ttttgagaat cggagtcgat      2220
     gtttgcagcg tggccagcgc catggaaccg ttcaccaaga tcaaggacgt gcaagttcag      2280
     atcttgatga acccggaggt gaaaccagtt tgtcaaccca tccgtcgagt cccaatccca      2340
     cttgaagacg cagttaacaa aaagttggac cagcttctag cgaaagatat aatcgaagtc      2400
     aaacacggtc ctgcgccttg ggtttctccg ttggtagtgg tgggaaaaag taacggagaa      2460
     ccgagaattt gcctcgattt gcgtcgcgtc aatgaagcgg tgctccgcga gagacatccg      2520
     atgccggtcg tagatgacta cttggcacgg ttgggaaaag ggaagtactg gacgaaactg      2580
     gacattaagg atgcgttcct gcaggtcgag ctggccccgg agtcacgcga catcaccgtg      2640
     ttcattacga acaaggggtt atttcgtttc aaacgtctca catttggcct agtgaatgcc      2700
     ccggagtgtt ttcaaaaggt catggatcaa attcttgtcg gctgcgaagg ggcgttctgg      2760
     tacctggacg atgtcataat cgaaggcagt cgtcgtgaag aactcgaaga acgtgttgca      2820
     aaggtaatgt gactttgtgt gctagtcgcg tttcttgaaa tgactgtatc aacctaacag      2880
     gacaaataaa cgatgaattt ctattatttt gtttcattag gtccttaggc gattcaagga      2940
     acgaaacgtt gagttgaact gggacaaatg cgagtttggg ttgacagaaa tcgagttctt      3000
     gggacatcgt ataactgctg acggtatcgt gcctaccaac gacaaggtga aggccataaa      3060
     atcattccgg cggccggaaa acgaagccga agttcggagt tttttgggcc tggccaacta      3120
     ccttaacaag tttatacccg atctggccac attggacgaa ccgctgcgca tgctaacacg      3180
     gaaggacagc aaatttgtgt ggtcggtggt gcaccaaacg gcattcgacc gcatcaagga      3240
     tgcaattgcg gacgtaatga aactgggatt cttcaacaaa gaccaaagaa cgacggtgat      3300
     ggctgacgca agtccaatag ggctgggcgc tctgttgatt caaactgacg atgctggcaa      3360
     cagcagagta gttacctgtg cttcgaagtc cttgaccgat acggaacgga gatactgcca      3420
     gaccgagaag gaggcgttgt ctcttgtttg ggctgtcgaa aggttccaga tgtacttgta      3480
     tggaagacgt ttcgatattc tgacggattg caaggcgtta gtgtatctgt ttacggaacg      3540
     atcgcgaccg tgtgctagaa tagagcgctg ggtactccgt cttcaagcct ttgaatatct      3600
     ggtcagccat attgccggaa acaggaactt agcagacgtg ttgtcacggt tgagtacaat      3660
     agtgccggtt ccgtttgaca tcagggagga gttgttcgtt cggcagattt cgttgtcagc      3720
     cgccactgct gttgctttac gctgggaaga aatcacgaaa gcatcgctgg aggacccgga      3780
     gattcaggat gttctggagt gcattgacaa tggcaacatc taccagatgc caatagcata      3840
     ccgtgttgtc gcaaatgagt tatgccgatt tggagacgta ctgctgcgta cggacaggat      3900
     tgttgttccg actgcgcttc gggaaagagt tgtctgcatc gctcatgaag gacatttggg      3960
     cattcgaact atgaaagctc atctccggag tgcggcgtgg tggcccaaga tggatatggc      4020
     tgttgagtca tacgtgaaga gatgtcgaga ttgtcttctc gtttcctctc ctgatccacc      4080
     cgaacctatg gtcaggaagg agttgccaag cggaccttgg gaggacatcg ctatcgactt      4140
     cctcggaccc ctgcccaaca aggagacatt gttggtggtc gttgactatt acagtcgata      4200
     cgttgaagtc tgtgaaatga agtctaccac cgcgaaggaa accatcgcac agttgagtaa      4260
     gattttctgt cggtttggtg tgcccaatac catgcgagcc gataatggtc ctcaattgaa      4320
     cgcatcttgt gaggagttca ccaatttttg tggtgaggtc ggggtaaggt tggtcaacac      4380
     tataccatac tggccacagc ataatggtga gatagagcga cagaaccggt cattcctaaa      4440
     acgaatgaaa atcgctcatg aggcgggtcg cgattggaga atggagctta acaaatatat      4500
     tctctcgtac cacgccacac ctcatccaac cactgggcgt tctccagccg agctcatgtt      4560
     tggtcgtaag atccgttcta agttgccaca gctgccacgt gaagcgagct ttgatgagga      4620
     ggtacgcgat catgataagc tgcagaagga gaaaggtaga gtttatgcag atacgaagcg      4680
     taaggcgcgc acgagtgaaa ttgaggttgg ggaccgagtt ttggcaaaac ggatgcgtaa      4740
     ggacaacaaa ctatcttcag attttgggcc ggaagaattt gaagttatcc ggaagagtgg      4800
     cgcagatgtg acggtgagtt cagcgcagga tggtgtgcaa taccgcagga atgtccgaca      4860
     tctcaagaga atccttaaag gaagcgagga tcaaacattc catccagcga gcggtgacga      4920
     aggtcaagat gaatccggat cgacagagta cccaatcaac catgaggagc agaacacgtc      4980
     gttcgagcag gctgccagtt cgaaacgggc aagaagagaa ccgacgaagt tccgggacta      5040
     tgtggctcat tgagcttttc aaattttaaa caaggggaga t                          5081
//
ID   Gypsy-85_CQ-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   AAWU01006083;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-85_CQ_;
KW   Gypsy-85_CQ-I; Gypsy-85_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-226
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 550-550 (2011).
XX
DR   GenBank; AAWU01006083; Positions   26553   26328.
XX
SQ   Sequence 226 BP; 68 A; 36 C; 84 G; 38 T; 0 other;
     tgtagggttc agcgcgggga gtgtactgct ttctggcagc actgccatga ggagaggaag        60
     aatagggaga ggaagaagag gagcgactgg ggggaacggc gaggggagtc aggagagagc       120
     agttagcagc gacggacgcg aagttaacaa gcgggaaata aacgttgtga tcaaaggctg       180
     attaaaggta ttaattctga agagtagtcc gaacgggtcc ctcaca                      226
//
ID   Gypsy-86_AA-I repbase;    DNA;    INV; 5502 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   09-SEP-2011 (Rel. 16.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-86_AA_;
KW   Gypsy-86_AA-LTR; Gypsy-86_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5502
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [2732-3160] - Reverse transcriptase
CC   Positions [4538-5014] - Integrase core
CC   'TAAA' target site duplication
CC   LTRs are 99% similar to each other.
CC   The ORF is interrupted by an insertion of a DNA transposon
CC   Sola1-N9_AAe (masked).
XX
FH   Key           Location/Qualifiers
FT   CDS           1610..3229
FT                 /product="Gypsy-86_AA-I_1p"
FT                 /translation="MSLNTTNNVSNWRTLKDFLLKEFEFSENCAVVHERLR
FT                 NRKRNLGENVLEYFLQMREIGAKANVDILSIITYTINGINDNGPDKTILYG
FT                 SKSIDEFREKLRIYQSIKDSKYGRDGNFHPLNSEKRNFSGRPNGFNRNLTN
FT                 QFKSPPRPINCYNCGRDGHISRECPKKFGNKNANICNSNTAVSKGTFMMIL
FT                 VGTIPFEAFFDSGSDVSLLKEEWKNKLNLNMNQNDRKRLITLKGAIWTLGS
FT                 VVLDIEIENTPLRVTFDILRDEDLPHDILLGRNILTFGDESVTADGAKFSP
FT                 KEELFALRIRTDEVSDDFFDHIDDVYIRDKVKQMVEDYCPSKVENNRVKLK
FT                 IVLKNESPIQQLPRRLAPLEKQIVREQIDKWKEDGIIRPSTSEYSSPIVLA
FT                 HKKDGTRRLCVDYRRLNKVIVRDHFPIPLIEDIMDDLHSARVFSTLDLENG
FT                 FFHVPVEENSIKYTSFVTPAGQYEFLKTPFGLCTSPTVFQRFINDIFRELI
FT                 EKKIVIVYIDDILIPARNEIEALERLKMVLKVAQSHGLIIKWKK"
FT   CDS           4400..5500
FT                 /product="Gypsy-86_AA-I_2p"
FT                 /translation="MHELLTREYWIENLSTKLDRFVKSCVPCILACRKAGK
FT                 REGYLYPIPKDGTPLSTYQIDHLGPLTASNKLYRYIFTVIDAFSKFVWIYP
FT                 VKSTTADEVLKKLEVQRCVFGNPKRIISDRGAAFTSTVFQNYCENEGIEHL
FT                 QITTGVPRGNGQVERIHGVIVPALAKLAVDNPENWYRHVGKLQEFLNNTLQ
FT                 RSIARTPFELLFGTKMRTTQDLRLAEIIEQEWIRIFEESREEIREMARANI
FT                 ENCQRKMKQQFDRNRKEAEDYEVGDLVAISRTQFGTHLKIARKFLGPYRVI
FT                 KKKRNDRYDVEKVGNEEGPKRTSTCAEFMKRFIPGEDEEEETYDNMEQPDI
FT                 GRSNQEDTNDQITPSGPDGGQDDR"
XX
SQ   Sequence 5502 BP; 1737 A; 850 C; 1182 G; 1503 T; 230 other;
     aatttggggg ctcgtccggg aacgcgagaa gaaactgtcg ggtactcgtt agtgcgcgcc        60
     ggtgggcgag tgtgaaaaaa aaaattgttg aaaattgaaa taattttgta aagaaatttt       120
     tcactaaagc gaattgtaaa atatattgtt ttttttttgt ttttttgaat tgaacaaatt       180
     agtaataaga ctgaattgaa ttaagtgata attaatgata agtaataaag tgaattggat       240
     ttttatttga attaagttat agagtacttt cttaagtggc agtgtaaaac taacaaccag       300
     ccacattacc gtgctgtaaa tttcgcacat tctgtgcacc gtgaaaaaga agaaaaattg       360
     tgagttcttt tgcgagcatc gaattgcata gaactacatg tgtgacctga ggttaagtgt       420
     cattgtccag tgctacaaat aaataagccc tagctcgaac gactgtgact gtgtgtacgg       480
     tgccggcata acaggcgaag aaagcgaaag taacaaacgt tttgttctct tgtggctaat       540
     ttatattgca acagtttgag gaaatgcagg acggaaacat cccgccgttc aggcctagtg       600
     gtggtaacat acctcccgtt tctaatcctc aattttcccc ttcctctaat aggcttccaa       660
     tgaacattat agagaacact ttcacacgtt taatagacca aatcaatttt tcaaatacct       720
     ctatgtccaa cttaacgcaa gagcttcgcg cgatgcgcag tgaaatgaac tgtatgagag       780
     aagaaacatc tcggttgaac gtagtagtag aagaaatgcg atctagttcc atggtgcctc       840
     agcaggcaag tactcctaat ggaggtagcc ctactggatg tgatgaagat agactagcga       900
     gaagcaatgg cagaagtgcg atagacaaga acactcgtgt aaccgttcaa aacaaagtaa       960
     gtgacggcga cggtcgtgat catggtggtg tgtcgagaac aaattatggt cgagatgttt      1020
     tgaatggtga tgctaacgat ctgttgggca acggcccgaa tgttgattta tttagtggct      1080
     caaatgggca ccacttactt ggtggtcgga atcgtacggt ggaaaagttg agtgtcaatg      1140
     aataccaaca tgctattagt gagattggaa gctgttgtgg ctctgaggcg tacggtggct      1200
     tgcgtggtaa ctaccacatg gaggcccatg cgcagaacgc agacagagaa ctagaaccgc      1260
     ggctatcggt aagtgcagag tctatataca cagagctgcg cgaagagact tcttcaaatg      1320
     cttgttcttc ttcgtcttcg aaaatagccc ctatctgttt tgctgggctg ctcgataggt      1380
     agacggtttg acagttcgat aggtagattt ggtttcactc ttcgcgcaac tcttcattca      1440
     tagactctgg gtaagtgaag ctgagacagc tttctctgaa ttctctggga ctgattttta      1500
     tcctgtgcgt aaatggattg ctgattttga tgaattgtca gattccattg ggttatcaga      1560
     gctacgtaag ttcgtcgtta ggaaacgtaa attaactggg ttagcaagaa tgtcattgaa      1620
     cacaaccaat aatgtctcta actggagaac attgaaagat tttttgttaa aagaattcga      1680
     attttcagaa aattgcgctg ttgttcatga aaggttgcga aatcgcaaaa gaaatttagg      1740
     agaaaatgtt cttgagtatt ttttgcaaat gcgagaaata ggggcaaagg ccaatgtgga      1800
     tattttgtcc attattacgt acactattaa tggaatcaat gacaatggtc cagataaaac      1860
     tattttatat ggttcaaagt caatcgatga atttagagaa aagcttcgta tatatcagag      1920
     cattaaagat agtaaatatg gaagggatgg aaattttcat cctttaaatt cggaaaaaag      1980
     gaattttagt ggaaggccaa atggcttcaa tagaaacctt acgaaccaat tcaaaagtcc      2040
     tccaagacca ataaattgtt ataattgtgg aagagatggc catatctcca gagaatgtcc      2100
     gaagaagttc gggaacaaaa atgccaatat ttgtaactct aacaccgctg tttcaaaagg      2160
     aacatttatg atgatattag ttgggacaat tccctttgaa gctttttttg attcgggatc      2220
     tgatgtctct ttattgaaag aagaatggaa gaataaactg aatttaaata tgaatcagaa      2280
     tgatcgaaag cgtttaatta cgctaaaggg agccatatgg acgttgggta gcgttgtgct      2340
     agatattgaa atagaaaata ctcctttgag agttacgttt gatattctgc gggatgagga      2400
     tttgccgcac gatattttgt taggaagaaa tatattgacg tttggtgacg aaagtgttac      2460
     agctgacgga gcaaaattca gcccaaaaga agagcttttt gctctgagaa ttagaacaga      2520
     tgaagtttcc gatgattttt ttgatcatat tgatgacgtt tatatacgcg acaaggttaa      2580
     acaaatggtt gaggactatt gtccaagcaa ggttgaaaat aacagagtga agctgaaaat      2640
     agtattgaag aatgaatcac ccattcaaca acttcctcga cgcttagctc ctttggagaa      2700
     gcagatagtt cgagagcaaa ttgacaaatg gaaagaggat ggaataattc gtccaagtac      2760
     atccgaatat agcagtccta ttgttttggc ccataaaaaa gatggaacca ggcggctttg      2820
     tgtagattac cgtagattga acaaagttat tgtacgggat catttcccga ttcctttaat      2880
     tgaagacata atggatgatt tacattcagc acgagtattt tcaacccttg atttagaaaa      2940
     tggattcttc cacgtaccag tagaagaaaa tagcatcaaa tatacgtcgt ttgtgacacc      3000
     tgcagggcaa tatgagtttt taaaaactcc atttggatta tgcacttcac cgacagtttt      3060
     tcaaagattt atcaatgata tttttcgtga attaattgaa aagaaaattg ttatagttta      3120
     tattgatgat atattgattc ccgctcgaaa tgaaattgaa gcattagaaa ggctaaagat      3180
     ggtattaaaa gtagcacaaa gccacggact tataattaag tggaaaaaat gacagttttt      3240
     aaagcgcaag attcaacatt taggatatga aatagaaaac ggaaatattc gtccaatgtc      3300
     ggaaaaaaac aattgctgtt tctaaattcc ctgaaccaag aagctataaa gaaatacaac      3360
     aattcttggg attaactgga tattttagaa agttcattga tgggtattcc ataattgcca      3420
     agccgttgac tgatttgttg cgtaaggacg ctgtatttat ttttggacca gaacaacgta      3480
     ccgcaatgga aaaattgaaa gaagcattgt gtaatagacc aacactaaaa ttgtactctc      3540
     ctaatgctat aactgagctt cacactgatg caagtagggt tggatatggt tctattttgc      3600
     tgcagaaatc tgccggagag aatgttttcc atcctgttta ttattatagt agaaaaacaa      3660
     catctgctga agcaaattac ccaagttacg agctagaggt tttagcggtg atttctgcct      3720
     tgaaaaaatt ccgggtatat ttactgggta ttccttttac catcgtaact gattgtgctg      3780
     cttttaagat gacaatggta aagaaagata tatccccaag aattgctggg tgggcattat      3840
     tgctggaaga ataccaatac accttagaac accgccctgg tactcgcctg aaacatgtag      3900
     acgcgcttag cagaaatcct gtagttatgc ttttacagag taacataata gatcagatta      3960
     aagtgtgtca acagagagtt cagtatcxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4020
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4080
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4140
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4200
     xxxxxxxxxx xxxxxxxgat gaaagattgg cggcaataat gaaagtttta aatactgagc      4260
     catttggtga ttattttgtt gatcatggaa tattatataa gaacttcgga ggtggaaagc      4320
     ttctagtcat ccctaattcg atgcataatt tcataataag aaatgttcat gagcaaggac      4380
     attttggggt gaaaaaaaaa tgcatgaact tcttactaga gagtactgga ttgagaactt      4440
     gtcgacaaaa ctagacagat ttgtcaaaag ttgcgtgcct tgcatactgg cttgtcgcaa      4500
     ggctgggaag agggaaggat acctttatcc tattcctaaa gatggaacgc cattgtctac      4560
     ttatcaaatt gatcatttag gaccgttaac agcatcaaat aagctgtatc gatatatttt      4620
     taccgtgatt gacgcgttta gcaaatttgt gtggatatat cctgtgaaat ctacaacagc      4680
     cgatgaagtt ttgaaaaaat tagaagttca gagatgtgta tttggaaatc ccaaacgaat      4740
     tatttccgat aggggagctg cttttacttc gactgtgttt caaaattatt gtgaaaatga      4800
     gggcatagaa catttgcaaa ttaccactgg agtaccacgc ggcaatggcc aagtcgaaag      4860
     aattcatgga gtcattgtac ctgctttagc taaactagca gttgataatc cggaaaactg      4920
     gtaccgtcat gttggaaaac ttcaagagtt tttaaacaat actcttcaac gaagcatagc      4980
     tagaactcct tttgaattgt tgttcggaac taaaatgaga actacacaag atttaagatt      5040
     agcagaaata attgaacagg agtggataag aatatttgaa gaatctagag aagaaattag      5100
     ggaaatggca agggccaaca tagagaattg tcagagaaag atgaaacaac aatttgaccg      5160
     taacaggaaa gaggccgaag attatgaagt aggtgacttg gtggcgataa gtcgtacgca      5220
     gtttggtact catttgaaga tcgctcgaaa atttctcggg ccatatcgcg tcatcaagaa      5280
     gaagaggaat gatagatatg acgtcgaaaa agtcggaaat gaagaaggac caaagaggac      5340
     atcaacttgt gcggaattca tgaagcggtt catacctggt gaagatgaag aggaggagac      5400
     ctacgacaac atggagcagc ccgacatcgg tagaagcaac caggaagaca ctaatgatca      5460
     gatcacacca tccgggccgg atggtggtca ggatgaccga tt                         5502
//
ID   Gypsy-86_AA-LTR repbase;    DNA;    INV; 273 BP.
XX
AC   supercont1.246;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-86_AA_;
KW   Gypsy-86_AA-I; Gypsy-86_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-273
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.246; Positions 1418589 1418317.
XX
SQ   Sequence 273 BP; 77 A; 51 C; 55 G; 90 T; 0 other;
     tgtaggaata ttatcttgaa cacccctgca aactctccca gttgcacatc atctctgagt        60
     catcagcata tcgattggaa cgaacagctt gggaagacag tgtttaatag tgagcgcaat       120
     cgatcggtcg tattacggtt ttagtggaga atatacgtat tgaatttatt cgccggggtt       180
     taagttacgt ttttcgatat ccaaagtttt catctagacg cgtatccctt aattttcagt       240
     taaaagtgca aatagttagt catatttgct aca                                    273
//
ID   Gypsy-86_CQ-I repbase;    DNA;    INV; 8062 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-86_CQ_;
KW   Gypsy-86_CQ-LTR; Gypsy-86_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8062
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 551-551 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5336-5818] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           469..2091
FT                 /product="Gypsy-86_CQ-I_1p"
FT                 /translation="MEQWYHANANDLYEEEITYELAIRQLPVEGSLSTRMR
FT                 NLRQALREPETAKVQMVIGYSFADDYPTITYSLKELVHRLENNQQRGCWSR
FT                 LVHYHKRVRRYVCADRTQLQKQEELLNLINDLSLKYYHQDMNQMIPHTPLF
FT                 LVVKSPTGKLLIRTQTETPAVTSPSASVTTSANPEQEIRSTSTVAGQVISS
FT                 LEDGAYGGASVVSSAGLVTSAGELSSQMSSLRVSNVSTTAYPMVTATVTSV
FT                 QTGAIPKRPVLADAYEQLRVFLQKPLSTSPVLDSGDLSAMLRTPEFHRAFR
FT                 RAIQSEMSAAESCFRFPAPTTMITAMNTSTPTVSSTTTRPTPILQVTPPTS
FT                 AENPVGNKGPRRELDMSQYVHIKDIEGYIKACVNSIVHQGPRCPDPHEQTI
FT                 HNLVDQITNVGVHDSEVTNISRGVGSIPHPVAGQFDSNPTLQHTVPTTVVP
FT                 QGLMGSVESLFGGLTTAVSQAPLFGIPDTPEFNPGVSGIDRGGQQPQPQPD
FT                 QFWRRSKFVKPTVRSKPVRSINRFAAAVFCWSTSVCPPASAASDL"
FT   CDS           2911..3969
FT                 /product="Gypsy-86_CQ-I_2p"
FT                 /translation="MEIEGNRSSAEPISNVPTINFRYFNQNYNINTTFRRC
FT                 PHLTVNILGETVEGLADTGAGVSIISSLELIGKIGLKIQKCNIKIKTADST
FT                 EYTCAGYVNIPYTYESKTCVIPTIVVPEVTKDLILGVDFLEAFNFRLMVAP
FT                 ELLEPRNETEVEEDSAAVRSVDLVFAEDFFAEEDCTVCFQIIPMEGDSLID
FT                 PPEEDESLEMPTIEIPESHLQQPSDIETEHSLSFPQRQQLFEAVRQLPATA
FT                 EGKLGRTSVLQHAIDLLPGTLPRRLPSYRWSPVVERVIDEEVDRMLRLGVI
FT                 EESAGPVEFLNPLLPIKKPNGKWRICLDSRRLNSCTKRDDFPFPNMLGILR
FT                 ESRDRVTFRL"
FT   CDS           4811..6193
FT                 /product="Gypsy-86_CQ-I_4p"
FT                 /translation="MSLTFLRTMSIESKSPRIARWALKLSKYDITLQYKKG
FT                 TENVPADALSRSLTAVDVCLPDPYVDGLKTQIEKCPDKYKDFKVVDGQVFK
FT                 FISGSSLAEDSAFRWKQVVPMCERQPLIRQIHEEAHLGYWKTLCKVRERFY
FT                 WPRLATDVKRFCFACQICKESKIPNINVRPTCGKPKLCSRPWEMISLDFLG
FT                 PYPRSKKGNVWILVVSDFHSKFVMCQCMRNATAPAVCQFLETLIFTLFGAP
FT                 SVCISDNAKVFQSDLFRKLLEKYGVQHWNLAVYHPSPNPSERVNRVIVTAI
FT                 RCALNDKKNHRDWDESVHTIAMAIRTSVHDSIGFSPYFVNFGRNMISNGRE
FT                 YDHLRHLGSEEEEDPLKRSAEMEKLFEVVRQNLAKAYQRYSQPYNLRANKR
FT                 HQFEVGQDVYKKNVHLSDKSKDFVGKFANKFTKARVKEKLGSNTYVLEDMN
FT                 GRRIPGTFHGSFLKNA"
XX
SQ   Sequence 8062 BP; 2130 A; 1704 C; 2002 G; 2225 T; 1 other;
     agaatcgtta catttggcgc ccaacgtggg gccgtgaaaa cggattttcg tgagaatttt        60
     tcactttcag tgatagtttt catcgtttgg tttaaagtta ttttgcaaat tagtttcagt       120
     agtgttaatc actaaactgg ttgagatttt ggattgttgg gttagcatat ttagttggta       180
     tttttagtta agttttggga ctttggtttt tggacttttt gggttagttt gggtaagatt       240
     cggagattgc gagtctaaac tggtttagtg aacttccatc cacaacatca matttatttt       300
     tttttctttt tatactcatt tgccaactgt ttgggttagt taaattggtc gaattagttg       360
     ttttctttac tacattccaa tctttttgtt tattattaca cttaaacttt cattgcttga       420
     agttaccgat tattttcttt tgattactga cttattacgc aattcaaaat ggaacaatgg       480
     taccatgcca acgcgaacga tctgtacgaa gaggaaatca cgtacgagct cgcgattcgt       540
     caactgccgg tggaaggttc tttgagcact cgtatgagga atctacgcca agctttgcgc       600
     gaaccggaaa cggcgaaagt gcaaatggtg atcggttatt ccttcgcaga tgattatcca       660
     acaattacgt acagcctcaa ggaactcgtg catcgcctgg agaacaatca gcaaagagga       720
     tgctggtcca gattggtgca ctaccacaaa cgtgtccgac ggtatgtctg tgccgatcga       780
     acccaattgc agaagcagga ggagctgctg aatctcatca acgacctttc gctcaagtac       840
     taccatcagg acatgaacca gatgattccc catactccgc tgttcctcgt cgtgaaatcg       900
     ccgaccggaa agttactgat tcgaacgcaa acagaaactc ctgccgttac gtcaccgagc       960
     gctagcgtta ctacgtcagc caatccggaa caggaaattc gaagcacgtc taccgtcgcc      1020
     ggtcaggtga ttagtagctt ggaagatggt gcttatggag gcgcatcagt tgtttcgtca      1080
     gctggattgg ttacgtccgc cggagagttg tcttcgcaga tgtcgtccct acgcgtttcc      1140
     aatgtcagta caaccgccta cccgatggtc acggcaactg ttacttccgt tcagactggt      1200
     gccatcccga agcgtcccgt tttggccgat gcctacgaac agctgagagt ctttttgcaa      1260
     aagcctttgt cgacatcgcc agtgttggat tccggtgatc tgtcggcgat gctgcgcacg      1320
     cccgagttcc atcgtgcatt ccgcagagcg attcagtcgg agatgtccgc cgcggagagt      1380
     tgcttccgat tcccggcgcc gacaacgatg attaccgcca tgaacacgtc aaccccaacc      1440
     gtttcgtcta cgaccacgcg tccgactccg atcttgcagg taactccgcc cacatccgct      1500
     gagaatccag ttggaaataa aggacctagg agagaattgg acatgagtca gtacgttcat      1560
     atcaaggata tcgaaggata cattaaagca tgtgttaatt cgatcgtgca tcaaggacca      1620
     cgatgcccag accctcatga acaaacgatt cacaacttgg tggaccagat taccaatgtg      1680
     ggtgtccacg actcagaggt aacgaacata tctcgtggag ttggaagtat accgcatccc      1740
     gtggccggtc agttcgattc gaatccgacg ttgcagcata cggttccgac tactgttgtc      1800
     cctcaaggcc ttatggggag cgtagagagc ttgtttggag gtttaaccac tgcagtttca      1860
     caagcgccgt tgtttgggat tcctgatacc cctgagttca accctggtgt cagtggtatt      1920
     gatcgtggag gtcagcaacc acaaccgcaa cccgatcagt tctggcgacg ttccaagttc      1980
     gtcaaaccca cagttaggtc aaaaccagtt cgctcgatca accggtttgc cgccgcagtc      2040
     ttctgctggt caacatccgt atgtccgccc gcgtctgccg catcagacct gtaacatcat      2100
     cgagaaatgg ccgaagtttt ccggcgacac gagtccgatg cctgttgatg actttttgcg      2160
     acaaatcgca caacatagtc gatcgtatca gatctccgcc gctgaactac gagttcacgc      2220
     tcatctcttg ttcaaagatg atgcttacgt ttggttctgt gcgtacgatg agcagttgga      2280
     cacgtgggag aagttggtga tctacctcag gatgcgttac gacaacccga accgtgatcg      2340
     tttcatcaaa gaccagatga aagcccggaa gcagcgacct aacgagaagt tcagcgcgta      2400
     cttaaccgac atcgaagcgc tgtcgcaacg tttggtgaat aagatgaccg ttcaggagaa      2460
     gttcagtcta attgttgaga acatgaagat gtcctaccag cgtcgtttgg ctttacacat      2520
     gggatcaatc acctcaattg gccatctcgc tcttctttgc tacaagtttg actcgctgga      2580
     aaccaatttg tacaatgcga aggcagctgg agtaaaccag attgagctgg aggatgagtt      2640
     tggtgaagaa gctgaggaat cggacgaatc ccaagttttt gctgtccagg ttaggaaaac      2700
     aacagccgcc gcacgtccgc cgaatgaagc tgttgcagta tcgagacctc gagcggagga      2760
     actgtgttgg aactgccgtc agctcggaca catgtggaga gattgtgtgc agcggaagag      2820
     actgttctgt cacatctgcg gtcacgagaa cacgatcgcg tccgtgtgcc cgaaccaaca      2880
     caaccttcgc gcgccaaaaa acgattagag atggagatcg aagggaacag atcttctgct      2940
     gaacccatct ctaacgttcc cactatcaac ttccgctatt tcaatcagaa ctacaacatc      3000
     aacaccactt tccgacgatg ccctcatttg acagttaaca ttcttggcga aacagttgaa      3060
     ggattagcag ataccggtgc aggcgtatct atcattagtt cgttggaact gattggaaag      3120
     attggcctaa agatccagaa gtgtaacatc aaaatcaaga ctgcggacag taccgaatac      3180
     acatgtgccg gttacgtaaa cattccgtat acgtacgaat cgaaaacatg tgtaattccg      3240
     accatagtcg tcccggaagt tacgaaagat ctaatccttg gagtagactt tctggaagct      3300
     ttcaatttcc ggctaatggt cgcgccagag ctgttggagc ccaggaatga gactgaagtt      3360
     gaggaagatt ctgctgctgt acgatctgtc gatttggtgt tcgccgagga cttcttcgcg      3420
     gaagaagact gcacggtttg tttccagatc atcccgatgg aaggagattc gctgatcgat      3480
     ccgccggaag aagatgagag cctcgagatg ccgacgattg agattccgga aagccatcta      3540
     caacaaccgt ccgatatcga aaccgaacat tcgctctcgt ttccgcaacg tcaacagtta      3600
     ttcgaagcag tccgccaact tccggctacg gccgaaggaa aattaggtcg aacgagtgtt      3660
     ctgcagcatg ctatcgatct gctacctgga acgctgcctc gccggttgcc cagttaccgt      3720
     tggtctcccg tagtcgagag agtgatcgat gaagaagtag accggatgtt gcgtttagga      3780
     gtgatcgagg aaagtgctgg tcctgtcgag tttttgaacc cgttgttgcc catcaagaag      3840
     ccgaatggga aatggagaat ctgcttggat tcgcgtcgtt tgaactcgtg cacgaaacga      3900
     gatgacttcc cgttcccaaa catgctcgga atactcagag aatccagaga tcgcgttact      3960
     tttcggttat agatctgtcg gagtcctatt atcaggtcag cttggaggag tctgcgaagg      4020
     ataagaccgc tttccggact aataaagggt tgtttcggtt tgtggtgatg cctttcggac      4080
     ttacgaacgc gccagcgaca atggcccggc tcatgagtaa ggttttggga cacgatctcg      4140
     agccgtttgt ttacgtgtac ctggatgaca tcatcatcac gtccgaatcg tttgagcatc      4200
     attgtgagct gatcagcacc gttgcgtctc gtctcagcac cgctggactc acgatcaacg      4260
     tccagaagtc gaagttttgt cagcgtcaga ttcgttattt ggggtacgtt ctttcggaaa      4320
     aaggtttgtc catggatgtg acgaaaatcc agccaattct tgactacgct ccgcctcagt      4380
     ccgtcaagga cattcgccgt ttattgggat tggcagggtt ctaccaaaaa ttcatacaaa      4440
     actattccga aataacaaca ccgataacaa atctcctcaa gaaagaccgg aaaagttcag      4500
     ttggaccccg gaagctgacg aggcgtttag gaagttgaag aatgcgttgg tgtccgcacc      4560
     tgttctagcg aatcccaact tcgcgttgcc tttcgtgatc gagacagaca gctcggattt      4620
     agcgattggt gctgtgttgg tccagattca ggatggagta cgtcggacga ttgcctactt      4680
     ttcgaagaag ctttccagca cccagcggaa gtacagcgcc acggagagag aatgtttggc      4740
     cgtcctgctg gcaatcgaga acttcaagca ctttgtcgaa ggtagtcagt tcgtcgtcca      4800
     gacagatgcg atgagtctga ccttcttgcg aacaatgagc atcgagtcca agtccccgcg      4860
     gatcgctcgt tgggccttga agctatccaa gtacgacatc acgctccagt acaagaaggg      4920
     aaccgaaaat gtacctgctg atgccctgtc gcgaagtctc accgccgttg atgtctgttt      4980
     gccggatccg tacgtagatg ggttgaagac gcagatcgag aagtgtccgg ataagtacaa      5040
     ggacttcaaa gtcgttgatg gtcaagtctt caagttcatc tctggttcgt cgcttgccga      5100
     agatagtgcg tttcggtgga aacaggtcgt tccgatgtgt gaacgtcagc cgttgattcg      5160
     tcagatccac gaagaagctc atctcgggta ctggaagacg ttgtgtaagg ttcgagagcg      5220
     cttctattgg ccgcgactcg ccaccgatgt caagagattc tgcttcgcgt gtcagatctg      5280
     caaggagtca aaaataccga atattaacgt cagaccgacc tgcggaaagc ctaaattatg      5340
     ttcgcgccct tgggagatga tttcgttgga ctttctcgga ccatatccgc ggtcaaagaa      5400
     gggaaacgtg tggattttgg tggtgagcga cttccattct aagttcgtca tgtgccagtg      5460
     catgaggaat gccactgctc ccgcagtttg ccagttcttg gaaacactga tttttacgct      5520
     ttttggtgcg ccgtccgttt gtatttcaga taatgcgaag gtgttccagt cggatttgtt      5580
     ccggaagctg ttggagaagt acggtgtgca acactggaac ttggccgtgt atcacccaag      5640
     tccgaatccc tcggaacgcg tcaatcgagt catcgtgacg gccatccggt gtgccctgaa      5700
     cgacaagaag aaccatcgtg actgggacga gtccgttcac acgattgcca tggcgatacg      5760
     aacgagcgtt cacgacagca taggattttc accgtatttt gtcaatttcg gacgaaatat      5820
     gatcagcaac ggaagggagt atgatcacct gcgtcacctg ggcagcgagg aggaagaaga      5880
     cccgctgaag cgaagcgcag agatggagaa gctgttcgaa gtggttaggc agaacttggc      5940
     gaaagcgtat caacgctact cgcagccgta caacttgcgc gcgaacaagc gtcatcagtt      6000
     cgaggtggga caggatgtgt acaagaagaa tgtccacctg tcggacaagt caaaggactt      6060
     tgttggcaag ttcgcgaata agttcacgaa ggctcgagtg aaggagaaat taggttcgaa      6120
     cacatacgtg ttggaagaca tgaatggtcg gaggattccg ggaacattcc acggttcctt      6180
     ccttaagaat gcgtaagtca gttggggaaa aatcggatta gatgacaaaa agctatgact      6240
     gcacttttta ccggaagtgc acacacaaag attaagccta ataaaacaca tcattggtga      6300
     tacggttcag cacgatttga gatgtccacg agtttcctca gtcgtttagg ctaagttacg      6360
     caacacgagt tagttgctag gattaagcaa gctatgacta tgctgacgtg ggtcgcataa      6420
     acacaattga agatattatg aaatcttcag ccagaaaaat actcttttga ggtgttccca      6480
     cacacaaatc aggcacaatt tcgttgcctt tagaaagtaa agctatgaat gagtctcgat      6540
     gagctcaaac tagaacgtaa acaaatcaaa acactctttt ctgaggaact ttcttgtgtg      6600
     aaatgggccg tggtcgagat gcaatcaaat ttcactttag cttaccattt cctacgccca      6660
     aagtaaccaa tttgttttaa tttgtagtaa agttagttgt cgttgtacct agaatgatag      6720
     aaaatgttat gaatgagatg aaagtttggt tgggtttagt tagcagggaa tgtttcgctt      6780
     tgtaaacaaa cattcacctt caaattttgg cctttttgca acgtttttca ctttagtttg      6840
     atacttactc agtaaatctg cactttagtt tcagttttta gttaaattta gagtcaatag      6900
     cccggtttaa attgtaaaat ttcagtaaac ttttggaatt cgcttcagaa agtaaatttt      6960
     gggaagcaca ttttgttttg gtttgacagt ttgacatttc tctgctgctt tgagtgtttg      7020
     cgttgaatgt cagttggatt ggcgttatga ttttatgttt tggtaacgct atgttgcaca      7080
     gtgggagtgc agataagttt agtggtcaaa atgttggaat ggtaaagaaa agttggaaag      7140
     ttagataagc ttagttggat atcaggtctg tctgagtagt ttgggttgga ttggaatgtt      7200
     ttgtatttcc taaatctttt gcattagtgt aagttggagt acttgtccag acatttctgg      7260
     aagttttcgg aattagttta agttgaaaat attttccaaa catttttgga gtaatttggt      7320
     aaaattggtt tagttataag aaatattggt tttccaaata tttttggagt aaaattggca      7380
     actttggttg aaatttagtg taaggttagt tagttggcaa atgatttagg aaaataataa      7440
     acataagttg agatggttcg gaatgtgaga aggggaagta gaagatgttg gatggaatga      7500
     gttcaagtaa gaggatggca acatagtttg tctatttggg aaaaataagt ttgttggact      7560
     attaatcaat tggaattttt agttaagaag tatgttttaa gttaatgttg gatttttgag      7620
     tttgaacttt agtttgaact taaaaatttt gtaagttttc aacttacaaa atttttaata      7680
     ttagtgtggg cgaatgtaac cacatcattg ggagtccctg tatgtatgtt tgctaagata      7740
     tgttgggtca gctaggacac gcaccaaatt agggaaactt tgctttttga tcgtcgccac      7800
     ctatgggagg atagcagaaa cccaattttg caccgttttg ttagatgaaa atgattttta      7860
     ggcaaattgt gttcggttta aaattaaagc catttgggaa gcatctcctg tgtaaatttt      7920
     ttgaagctca atttgtcctt gaaaattaac aagaaagaga gcaaaatgaa aaagtctttt      7980
     gtagtaaaat ttgggagaaa actaagattg tcggttcgta caagcgatga agactgactc      8040
     tcgttcactt tggcagaact cg                                               8062
//
ID   Gypsy-86_CQ-LTR repbase;    DNA;    INV; 1625 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-86_CQ_;
KW   Gypsy-86_CQ-I; Gypsy-86_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1625
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 552-552 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1625 BP; 417 A; 356 C; 395 G; 451 T; 6 other;
     tgacacagtc cggatcgttt aaaaagttta attacgaccg tgatatttcg cgtcctctga        60
     tcgtcgtcaa ttgcgatcag gtgaaatcgt ggcagtgatt ttttttaaaa agttaaccgc       120
     attgagtgcg tcttgaaaag gtagttttgg tgatattttt ttttttgtaa tttgtacttg       180
     atttggtgaa attaaatttt gcagtcgagg tgtgaagaat tttggaggca gatctgtgat       240
     cgagcctagt tagcaggagt aattttgcag gtgtgaggcc gccgcaatca gaacgagcga       300
     gaaaggtaag aattagtttg gacgctttaa atttggagtt cgctmatgtt tgtgcacgtt       360
     gatttaggaa cccatcaacg tgggtggctt atctggagct ggaaagctca aacgtggtcg       420
     tctgggagcg caatcctgga tcggaagcmg ttttttggaa ccggaagtga agtgtttgct       480
     aatcttgaac tttgagaatc ttttggtgtg tcggaatttg gggacagccc gttgcttttc       540
     gctgttggca cagctctatt gccaccccca gcggcaaccg gawaaacgtc acaccggtaa       600
     cgccttagtc ggtctaggac gccatctcgt agcactttag cgagagcacg ttgggatcga       660
     acgctagagg tcagtgtggg atcggataac gctacacgtc cgtaacccct ctgccacgtg       720
     tttgctttcg gggtgggtta gcttcggctc aatactccca cgacttccgg aaacgcacgc       780
     ctgagttggt agcagtctgt gatcaatgac gcccctcagc atacactgac ccaccaacac       840
     atgtgcattt gaccgattta agccccgaca actagcacca tctatcggca ggacgccaaa       900
     gccgcaacaa caacacgcgc cgtacgcctg agccggtaac gcctcgcctc gcctcacacg       960
     cttcaagaat cggcccgcct tcgccgatcg gtccagccga catcggaccg gaattgtcga      1020
     cacatcgtgg gagcaccgca caaatcgcaa gtaacgaacc ccgcagggac gtttaggaac      1080
     cggataggga aatagggacg tttagcggtc agaaggwgta gggaaaaagg gttaggatca      1140
     cacctggact gagttgaact gtccacgcaa aagatggagg ttttttagct tkgcttttcc      1200
     tcccaataaa aaagtataat caaaactaca aaagtttctg gcctcagttt ttttctttta      1260
     atctgagaga taaaatataa tctttattct tttcttttaa tacaaataat acaaatttag      1320
     tcggtcctta gtgaacttgg gtcgaagtca gttsgtaaac gaagtcacat atcgcaatag      1380
     tttcagctaa atcaataaat acacacaaat atcggctcaa atcttggttt tctttcacaa      1440
     ttttcaatag tacaaaatct tagttttcgg tctttagttt tgggttagtt taatgaacat      1500
     tttggttggt gccactccgt tttagcctgc ccgaagagag agtttctagc cggacctcca      1560
     actgcgacaa cagccttccg tttggaagtg gcgcttaagc tgttgaacgt ttcgtgtgca      1620
     acgca                                                                  1625
//
ID   Gypsy-87_AA-I repbase;    DNA;    INV; 5147 BP.
XX
AC   supercont1.127;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-87_AA_;
KW   Gypsy-87_AA-LTR; Gypsy-87_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5147
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.127; Positions 1727926 1722780.
XX
CC   'GGTAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           750..2198
FT                 /product="Gypsy-87_AA-I_1p"
FT                 /translation="MLIVCLFSRRGRSTLMLDNLIVADVIRTLGLQLQTFE
FT                 YSSHTDDVGIEWRKWLRSFETMIRASRISDDEWKRDLLLHYAGPSVQQLFD
FT                 TLPELPDSDMRGPLVNIEQYTPNMTSYEEAVSKLGAFFLPKANTTYERHLL
FT                 RQMKQKVGESIDGFTVRLRIQAERCGFGDKVEENVKDQIIQNCQSTTLRRE
FT                 LLKRGDATLEEVLRIAKIFETVAQQEKSFSGVEQKPPISDVNKIEVKTFNR
FT                 RNRFGQPVSVECHRCGYFGHMAKDVKCPARGKSCNKCGGRDHFAKKCRKRK
FT                 HTVEASAKRDFVRQENIDCDARESESTNSNTVKHIVESETEYVFNVTTPDS
FT                 DGELKCVIGGVSTSAVIDSGSKYNLLSDSIWKTLKACKVVVRNQTREVSKV
FT                 FKSYSGNNLPVLGAFTATVQLGERNGPAEFYVVQGNGKLLIGRDTATEMGV
FT                 LKIDTSVNKVDAELPETTEKPSSSTIEGSSTTNELSKM"
FT   CDS           2844..5093
FT                 /product="Gypsy-87_AA-I_2p"
FT                 /translation="MFGINCAPELFQKIMEQILSGCEGCVNFIDDVIVFGA
FT                 DQHEHDVRLQMVLRRMNEMNVLLNNSKCIYGVTELKFLGHLLSDNGIKPDT
FT                 DKLESIKNFREPKTPEETRSFLGLVNYVGKFIPNLATLTEPLRQLTKHQHK
FT                 FVWSREHQIAFDELKRHMINPCTLGYFDGDDRTQLIADASPVGLGAVLIQT
FT                 NNRGPRIISYASRSLTDVEKRYAQIEKEALALVWAVERFHYYLFGRSFDLI
FT                 TDHKPLEAIFGPKSKPCARIERWVVRLLTYKGKVIYRPGKTNIADPLSRLA
FT                 ITSDQVGKPFEAYTEHYVNWVASNAAPIALKLREIERESEMDPTIQAVGIG
FT                 LQQGEWSDDAAPFKLFASELCFAGKILLRGTRMVLPEKLRARTLDLAHEGH
FT                 PGMTIIKQRLRVKVWWPKLDSQVEKYVKSCRGCTLVAAPSAPEPMQRKELP
FT                 SHPWQHVAIDFLGPLPSGHYLFDYYSRYIEVEIMKKIDSTETIKHLTTIFA
FT                 RFGLPISITADNGPQFVSEEFRDYCASCNIKLINTTPYWPQQNGEVERQNR
FT                 SILKRLSISQATNTDWVSELNKYLLMYRSSPHSTTGKTPSEMMFGYNIRDK
FT                 VPSINLPKEIDEETADRDKEKKEKGKLYADERRNARPNPISEGDKVLVKRM
FT                 TKPNKLATNFEPVVYDVIKRRGGDIEVASEETGTSYRRHVSHLKRIDGKPE
FT                 STRICDNPPDTNSLDAQGSGFTKRRSADSSQSESKSKRTTRLPGYLRDYV"
XX
SQ   Sequence 5147 BP; 1600 A; 966 C; 1242 G; 1339 T; 0 other;
     ttggcttcga ggaataaaat ggagcattcg cttggtaagt aaaattgaag aaaagtatgt        60
     tttcttttgg aaacattgtt tatgaataaa tagtgtaatg aatctaagcc attagtaatg       120
     ggtcagtcgc ttaaatgcgg gaaatttgta tgtctgacac cattctgcgg tagagcaggt       180
     ggaattttaa aatagatcag acgcttaaat gcggaacatg gaagaggctg attctattct       240
     gcggtagagc aggtactttt cattgcaaat agaacagacg cttgaatgcg gtatgaaatt       300
     gctgattcta tactgtggta gcgagagagg caaggaatga acgagacgcg aagagaaaaa       360
     gtagagatga agtgaaaaaa aatttgccat tattagatgg acgcaattgt tttgccaggc       420
     gttacgagct atttcgatgg agtgaaaatt tgtgattgtg accactatta ccagaacgca       480
     aatgttttga tagttcgagc ttcatgtcca agttgaaatc aatgcactat tagatgaacg       540
     caattgtttg acaggtgaca acttgaaggt tctcagaaca cgatttgcta attgagctga       600
     attgcgagtg tgaagaatat tgaatgtttg tgttttggaa aacctcgtcg tcctgtagat       660
     agtgtaaatg gtgattgatt tgatgaaaaa cattatagtg taagatgaat tcagatataa       720
     taatgctgtg actgagatga gccaaccata tgttgattgt ttgtttgttt tcacgtcgtg       780
     gccgaagcac tctaatgttg gataatctta ttgttgcaga tgtgatccga acgctgggtt       840
     tgcagttgca aacatttgag tactcgtcgc atactgacga cgtcggtatc gagtggcgca       900
     aatggttgcg atctttcgaa acaatgatcc gggcaagtag aattagtgat gacgagtgga       960
     agcgggattt attgctacac tatgctggcc ccagtgtaca gcagctattt gatacgttgc      1020
     ccgagttgcc ggatagtgac atgcgtggac cgctagtaaa tattgagcaa tacacaccaa      1080
     acatgacaag ttatgaagaa gccgtgtcga aattaggtgc gtttttcctc ccgaaagcaa      1140
     atacaacgta cgaaaggcac ctgctacgcc aaatgaagca aaaagtcggt gagtccatcg      1200
     atggtttcac ggtaaggctg cgcattcagg ctgaaagatg tggctttggc gataaggtcg      1260
     aggaaaacgt gaaggatcaa ataattcaaa actgccaatc gacaacatta cgcagagaat      1320
     tgcttaagcg aggtgatgcc actctagaag aagtgctacg gattgcgaag atctttgaga      1380
     cagtggcgca acaggagaaa tcattcagcg gtgtcgaaca gaaaccaccc atcagcgacg      1440
     tgaacaaaat cgaagtgaaa acgttcaaca gaagaaaccg ttttggtcag ccggtaagtg      1500
     tggagtgcca ccggtgtgga tactttggac acatggccaa agacgtgaaa tgcccagcaa      1560
     ggggaaagtc gtgcaataaa tgtggtggcc gcgatcattt cgcgaagaaa tgtcgtaaac      1620
     gtaagcacac tgtggaagcg agtgcaaaac gagattttgt tcgacaggaa aatattgatt      1680
     gcgatgctcg tgagtccgag agcacaaatt cgaacacggt aaagcacatt gttgaatcag      1740
     aaacggaata tgtgttcaac gtcacgacac ccgacagtga tggtgaattg aaatgcgtaa      1800
     tcggcggcgt atcaacatcg gctgtaattg actcgggctc gaagtacaat ttattgagcg      1860
     actcgatatg gaaaacgttg aaggcgtgta aagtagtggt ccgcaatcaa accagagaag      1920
     tgtcgaaagt attcaaatcc tacagcggca acaatttacc agttcttggt gcatttactg      1980
     cgaccgttca acttggtgaa cgtaatggac cagctgaatt ttacgttgtg caaggtaatg      2040
     gaaagcttct gattggacgt gacactgcta cagagatggg agtcttgaag atcgacacat      2100
     cagtcaacaa agttgatgcg gaacttccgg agactacaga gaaaccatcg tcatctacca      2160
     tcgaaggatc gtcgaccact aacgaactat caaagatgtg atagtggaca taccgatcaa      2220
     cgcagaagta acgccggtga ttcaaccgta tcgtcgcatt ccaatggcac tggagaactt      2280
     agttgatgaa aagatcgatg aacttttaac tcaaggtgtc atcgaaaaag ttaatgaacc      2340
     atccaaatgg gtatctccga tggtggtggt gcccaaaggt gacgacgtac gcatatgtat      2400
     cgatatgcgg cgggcaaacg aggcggttgc aagggagaac catccgttgc ctaccatcga      2460
     agatttcctg ccacagcttg ccaaagcgaa agtgttttcg agactggata taaagaacgc      2520
     gtttcatcag gtgagctaag tttgttttct attttctcga ttgacattat tttgaattga      2580
     cagggttctt aaccgatcta gttgaggatt ccgaattact tttttttatc tatttttttt      2640
     tttgttctta aattctgatt gattttacaa attgattttg cttagaaaac cattgtcaat      2700
     tgcttcaacg ttttgtctaa cataaatgaa gtttgaactg aaaacttata cgatgagttt      2760
     tattttaggt ggagatatcg cagaaatccc gagagataac aacctttatt actcgtaaag      2820
     gtttgtacag gtacactagg ttgatgtttg ggatcaactg cgccccggag ttgttccaga      2880
     agattatgga acaaatcctg agtggatgcg aaggttgtgt aaactttatt gatgatgtca      2940
     tcgtattcgg tgctgatcaa cacgaacacg atgtgcgact gcaaatggtt ctccgtagga      3000
     tgaatgagat gaacgtcttg ctgaacaaca gcaagtgtat atatggtgtt accgagctga      3060
     aatttttggg gcaccttttg tcagataacg gcattaaacc tgatactgac aagttggagt      3120
     cgattaaaaa ttttcgtgaa ccaaaaactc ctgaggaaac caggagcttc ttagggttag      3180
     taaattatgt gggaaaattc atcccaaacc tagccactct aacggaacct cttcggcagt      3240
     tgactaagca tcagcataag ttcgtgtgga gtcgagaaca ccaaatagct tttgatgagc      3300
     tcaagcgaca tatgataaat ccttgtactt tgggctattt tgatggcgac gatcgtactc      3360
     agctgatcgc cgatgctagt cccgtgggtt taggggctgt tttaatacaa accaataata      3420
     gaggtccacg aataatttca tatgcgagta gaagtttgac ggacgtcgaa aagcgatacg      3480
     cacaaataga aaaagaagcg ttagcgcttg tgtgggccgt tgaacggttc cattactatt      3540
     tgtttggacg ttcatttgat ttgattactg accacaaacc tttggaggca atttttggac      3600
     caaaatcaaa accctgtgcc cgaatcgaaa ggtgggtggt tcgtttgtta acgtacaaag      3660
     ggaaagtcat ctaccgccca gggaaaacga acatagcaga tcctttatcg cgactggcta      3720
     ttacatccga tcaagttggg aaaccgtttg aagcatatac ggaacactat gtaaattggg      3780
     tggcgagtaa tgctgcacca atcgcattga aattgaggga aattgaacgg gaatctgaaa      3840
     tggatccaac aattcaagca gtcggtatcg gattacaaca aggagaatgg tccgatgatg      3900
     cagccccatt taagctgttt gcatctgagt tatgctttgc cgggaaaatt ttactacgtg      3960
     ggactagaat ggttctacct gaaaagctga gagcgcgtac cctcgatttg gctcacgagg      4020
     gtcatccggg gatgacgata ataaaacagc gattacgtgt taaggtttgg tggcctaagc      4080
     tggacagtca agtcgagaag tatgtcaaga gctgccgtgg atgtacatta gtagcggctc      4140
     catcagcccc cgagcccatg cagcgaaaag agctaccatc acacccttgg caacatgttg      4200
     ctatcgattt cttggggcca ctgccatccg ggcattatct tttcgactat tatagtcgat      4260
     atatcgaagt ggaaataatg aaaaaaatag attctaccga aacaatcaag catttaacta      4320
     caattttcgc ccgatttgga ctgccgatat caattaccgc ggataatggc cctcaattcg      4380
     ttagcgagga gttccgggac tattgtgctt cctgcaacat caagttgatc aataccactc      4440
     cctattggcc gcaacaaaac ggcgaggtgg agcggcaaaa taggtccata ttaaagaggc      4500
     tctccattag ccaggccaca aatacagatt gggtaagtga gcttaacaaa tatttgttaa      4560
     tgtacagatc atccccacac tcaacgacgg gaaagacccc atctgagatg atgttcggct      4620
     acaatatccg tgataaggta ccatccatca atctaccaaa agaaattgac gaagaaacgg      4680
     ccgataggga caaagaaaaa aaggagaaag gaaaactata tgctgacgaa cgacgtaacg      4740
     ctagaccaaa tcctatctca gaaggcgaca aggtacttgt taaacggatg acaaaaccta      4800
     acaaattggc tacaaacttc gagcctgtgg tctatgacgt catcaaaaga agaggcgggg      4860
     atatagaagt tgcatctgaa gaaacgggta catcatatcg taggcatgtt tctcacttga      4920
     aacgtattga tggtaaacct gagtccacaa gaatttgtga caatcctcca gacaccaatt      4980
     cattggatgc tcaaggaagc ggttttacaa aacgaagatc ggctgattca tcgcaatctg      5040
     aatctaaatc aaagcgaaca acacgactac caggatactt gcgagattat gtgtaagctc      5100
     taaacccgtc atgagtaatc taaaataaat taaaaagaga aaagtga                    5147
//
ID   Gypsy-87_AA-LTR repbase;    DNA;    INV; 210 BP.
XX
AC   supercont1.127;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-87_AA_;
KW   Gypsy-87_AA-I; Gypsy-87_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-210
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.127; Positions 1722779 1722570.
XX
SQ   Sequence 210 BP; 63 A; 48 C; 42 G; 57 T; 0 other;
     tgtagtatcg taaccttaat tgtaacgctc agagaaataa ttatataacg gttgccggct        60
     ttggcgtcta gcgcattgag ctactactga tagcggtcgt cagttaacga ataaagatca       120
     ttagtgtttg agagaccaaa cgatatcgac gtgttattca ttactcctga tattcccgaa       180
     cgaacccccg aacgaactcc cgacactaca                                        210
//
ID   Gypsy-87_CQ-I repbase;    DNA;    INV; 5956 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-87_CQ_;
KW   Gypsy-87_CQ-LTR; Gypsy-87_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5956
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 553-553 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4792-5301] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           976..1965
FT                 /product="Gypsy-87_CQ-I_1p"
FT                 /translation="MELHFEKLSKILNNLSKAPTRRYRNSTLIAKLHEAKQ
FT                 VYNAAIIEIELYKESEQLQLLKNLRYLYGEAYTKLTARLDNNIEPLSFKNL
FT                 VNVILTINKLYRKVKMANTLDLSLAIRVVGKYDGDAAELENWLNDVTVLRA
FT                 GQPTVDEAVFVQFMNNRLTGAARGELTGIATIIEARNTLRSRFGIKLTPVA
FT                 VTAELRGLKQKGKSLVDFGNEIEKVAARLAAAWVSKQPQLFPTEAATRPIV
FT                 EPIAVEAFINGLKDQSKVLQMRSRNPETLTKALSDALEIHAQPMPEEVMWT
FT                 YASYSNPGFRGRGRGKRGKNRGNRGYQNNRNRNCETKR"
FT   CDS           2513..3439
FT                 /product="Gypsy-87_CQ-I_3p"
FT                 /translation="MILREPLFHENFVIPARTEVVTFIETSFKEDLVILNQ
FT                 EIEPLVFIANALVSPVDGKIPVRLMNLKNKAVKVNDLKLLAEPFKNYDLIK
FT                 IGSAYPHNVDRANKLLSELNFDGINEKDKVEITKLCLKFSDIFCLTDDKIT
FT                 VTKIYQPSLKVKPDTQPVYTRPYKLPQSQRDEVQRQVDKMLNDNIIEETVS
FT                 EWNSPLLLVPKKSTDDSKKWRLVIDYRKLNNVLQDDKFPLPNIEEVIESLA
FT                 GAKYFSHLDLTQGYYQCEIRPEDRSCTSFCTNRGQYQMTRLPMGLKNSPSI
FT                 FSRLMTVAWLVSMWKGV"
FT   CDS           3412..5646
FT                 /product="Gypsy-87_CQ-I_2p"
FT                 /translation="MAGLNVERCLVYLDDIIVFGKTLGDHNRNLFDVFERL
FT                 RQTNLKLNPLKCNFLKKELIYLGHTVSEEGIKPDPSKIEIIKKWSSPKTAD
FT                 EVKRFVAFSNYYRKHIKNFAKLCSPLNRLTRKGVDFEWSEECENSFQHLKN
FT                 CFITPPILDYPDFSDKNTFTLHTDASGKAIGAVLSNQNGRPIAFASKALNK
FT                 AEINYSTIEKELLGVVWAIRHFRPYLYGRRFDVYSDHRPLVYLFTLTDPSS
FT                 RLTKFRLALEEYKFDVIYKKGSENVIADALSRISIEDLQALTPQINFVCTR
FT                 AQNKNKIKSAEKNEDKSEVATDYIQIQIGSNENEFKIEDGTLIINPKTSIS
FT                 HLRGVLKRLVVFTEKNPIKGLVVQNTQTYKKIKEQIEALKINGMPPIIVIG
FT                 NEIKHVENKDEQQLIINNYHILPTAGHAGIKRTQNTIKQRYYWKSMDQDIS
FT                 NFIKKCVKCQQNKSFRTKVPMTMTSTAKTAFEKIFLDIVGPLLPDAYGNQY
FT                 ILTTQCDLSKFITATPIIDKSTNAVAKAFVEAVILNYGVPDQILTDRGTEF
FT                 MSSVFTKICDMLKIEKLNSTAYHHETIGALENSHKVLGNFLRIQTNNSYGY
FT                 WSAWVPYYKFAYNTTVHSATSKTPYELVYGKLCNFPSELQGETEISPVYNI
FT                 DDYSAILKFKLQTSQKQARDSLLKSKQKRIAKNTGHDDKNLYKINDLVLVK
FT                 NETGSKLEQKFEGPYEVLEDLGTNLKMQIKNKIDIIHKNRVRKFI"
XX
SQ   Sequence 5956 BP; 2216 A; 1019 C; 1159 G; 1558 T; 4 other;
     tggcgatcct gccagctcta acaaaagttt ttctttttcg ggaattcaaa gcttaaagtg        60
     aagactaaaa gtgaatgaaa tattcacaac agtgatttat gccagtgtag tgaattgtaa       120
     agtagcaaaa gcattaaaat gagttggttt agcagtgaag tgaatactgt taaaattaca       180
     gatcatgtaa gcgccatcgc gcttgtggta ctagctgcag cagcaataat ttacatgctg       240
     ggtaaatttt ttgccaaaca cgtgcaaaga acggcaacgg ccgccgcgag tcgtgagact       300
     aggttgaata atatcgctac gcagcgataa gtgaacattg atttaaacaa agagaagaaa       360
     gtttgtgaat aaacatttaa aatcaaattg aagaaaaaaa aaatcwgtga gaaaaaaaaa       420
     aaaaagcatg atgaacatga agagtgaaag tgaaaaattg aaaattaata tctaaaaaaa       480
     aggaagcagg atgaacacaa aaagtgaaag tgaaaaattg aaaattaata tctaaaaaaa       540
     atttttgtga tgatattgat gacaaaaaaa tatcacaaca gcaagaggag cgtcggttgt       600
     gagtacggtc cgtactacca caatccggat gtagactcta tcctgaaaac aagagaaata       660
     aaacaaatca gggaagcgcc ggttgtggga acggtcggtt ccgtcacaac ccgggttgca       720
     ggcccttggc aattcaacaa gcatcaaaca tcaaatgagc aggagagcaa tggttgtgag       780
     aacggacggt tctgacacaa gccatatgca gatcctcaag gcgaacacca tcaataacca       840
     accaacatct catcgcagaa gggaagcgtc ggttgtggga acggtcggtt ccgtcacaac       900
     ccgataagca ggccctggga aaatgattgg atcaactgga gatgtccgaa tcatcaaagc       960
     gtgagaatac tttaaatgga actacatttt gaaaaattat caaaaatatt aaataattta      1020
     tcaaaagccc caactaggag gtatagaaat agtacattaa ttgccaaatt acacgaggct      1080
     aaacaagtat ataatgcagc aataatcgag atagaactct ataaggagtc ggaacaatta      1140
     caattattga agaatttaag atatctctac ggagaagcat atacaaaact tacggcacgg      1200
     ctcgataata atattgagcc gctttctttt aaaaatttag tgaacgtaat actaacaatt      1260
     aataagctat acagaaaggt aaaaatggcg aatacwttag atttgtcatt agctattcgc      1320
     gtcgtgggta aatacgacgg cgacgcagcc gagttggaaa actggctcaa cgacgtgacg      1380
     gttctccgag cggggcaacc aactgtcgac gaagcggtgt ttgttcaatt tatgaacaac      1440
     cgtttaactg gtgccgcccg cggtgagtta acgggaatag ctaccatwat agaagcacga      1500
     aataccttaa gatcgcgatt tgggattaaa ttaaccccag ttgccgtgac agccgagtta      1560
     cgggggttga aacaaaaagg caaatcttta gtcgatttcg ggaatgaaat cgagaaagtg      1620
     gcagctaggt tagccgcagc gtgggtatcg aaacaaccac aacttttccc aactgaggca      1680
     gccacgcggc ccatagtcga accaattgct gtagaagctt ttataaatgg tcttaaggat      1740
     caatcgaaag tattgcaaat gcggtcaagg aatccggaaa ccttaaccaa agcattgtcg      1800
     gatgctctgg agatacatgc gcagcccatg cccgaggaag tcatgtggac ctatgccagt      1860
     tatagtaacc caggcttccg aggccgaggc cgaggaaaac gcggtaaaaa cagagggaac      1920
     cgtggctacc aaaataaccg aaatagaaac tgtgaaacaa aacggtaatc agcaaggtta      1980
     caataaccag cgcagcaagg ctacaactcg aatcgaggcc accgtggaaa tcgaggttac      2040
     caacataacc gaggaggtgg taatcgagga gttgctaacg tggttcagga agatccgcga      2100
     ccccaacagc agcaacaact acaacctcag caaccacgtg aagaggttaa tgtaggcgag      2160
     ttttttcgtg catagttcaa atgccgaaag agccctacgc ctaaaattta aaattaataa      2220
     ctcggaaatt tcgttaatag tagacagtgg agcatcttgc tgtctactag acgtaaatta      2280
     tttaccccaa aaatttcgtg aaaaaatcaa tgctacgcag tccatagagg ttcgtggttt      2340
     aaacggagtc acgcacactc ttggcactgt atcattgttt atagaatata atggttatga      2400
     ataccccata acgtttcata ttgttgaaaa cctatcgcct tctatagcag gattggttgg      2460
     aacgaatttt ttaagaaagt tcggagcagt aatagatttt gaaaattcta ctatgatttt      2520
     acgggaacca ttgttccatg aaaacttcgt tatacccgca agaacggaag tagtaacatt      2580
     tattgaaaca agttttaagg aggatttagt tattttaaat caagaaatag aacctttagt      2640
     ttttatagct aatgcgttag tttctccagt cgacggaaag attccggtta gactgatgaa      2700
     tttgaaaaat aaagccgtaa aggtaaacga cttgaaactt ttggccgaac cttttaaaaa      2760
     ttatgatttg ataaaaatag gtagtgctta tcctcataat gtggacagag caaacaaact      2820
     tttatcagaa ttaaatttcg atggaattaa tgaaaaagat aaagttgaaa ttactaaact      2880
     ttgtttgaaa tttagtgata tattttgttt aacagatgac aaaataactg ttacaaaaat      2940
     ttatcagcca tctttgaaag ttaaaccgga tacacaacca gtgtataccc gtccatataa      3000
     gttaccwcaa tctcagcgtg atgaggtaca gagacaagtt gataaaatgc taaacgacaa      3060
     tataatcgaa gagactgtat cagaatggaa tagtcctttg ttattagttc ctaagaaatc      3120
     aactgacgat agtaaaaaat ggcggttagt catagattat cgtaagttaa acaacgtttt      3180
     acaggatgat aaatttccac ttccaaatat tgaggaagtt atagaatctt tagcaggagc      3240
     aaaatatttt tcgcatttgg atctaactca aggttattat caatgtgaga taagaccgga      3300
     ggacagatcc tgtacttcat tttgtactaa taggggacag taccaaatga ctcgtctgcc      3360
     tatgggttta aaaaacagtc cttcaatttt ctcaagattg atgaccgttg catggctggt      3420
     ctcaatgtgg aaaggtgttt agtttatctt gatgacataa tcgtctttgg caaaacactt      3480
     ggagatcaca atcgaaatct ttttgatgtt ttcgaacgat tacgacaaac taatttgaaa      3540
     ttaaacccgt tgaaatgtaa ctttttgaag aaggagttga tctatttggg tcatactgtt      3600
     tctgaagaag gtatcaaacc agatccttcg aaaattgaaa taattaaaaa atggagcagc      3660
     cctaaaacgg ctgatgaagt aaagagattt gtagcttttt ctaattacta tagaaagcac      3720
     atcaaaaatt ttgccaaact ttgcagtcct ttaaatagac taacaagaaa gggtgtagat      3780
     tttgagtggt cggaagaatg tgaaaacagt ttccagcatt tgaaaaattg ttttattact      3840
     ccaccaatat tagattatcc agatttttcg gataaaaaca cgtttacttt acacacagat      3900
     gcatcaggaa aagctattgg tgctgtttta agcaaccaaa atggtagacc tattgcattt      3960
     gcgagtaaag cattgaataa agctgagata aactacagca caattgaaaa agaactactt      4020
     ggagtggttt gggcaatcag acatttcaga ccatatttgt atgggagaag atttgatgtt      4080
     tattcagacc accgtccttt agtttattta ttcacattaa ctgacccttc gagtagatta      4140
     accaaatttc ggttagcact cgaagaatat aaatttgatg tcatatacaa aaagggatca      4200
     gaaaacgtga tagcggacgc gttgtcacgt atttctattg aagatctcca ggcacttacg      4260
     cctcaaataa attttgtgtg tacaagagca caaaataaaa ataaaattaa atcagctgag      4320
     aaaaatgaag ataaaagcga ggttgcaaca gattacatac aaatccaaat tggaagtaat      4380
     gaaaatgaat ttaagattga ggatggaact ctgattatta accctaaaac gtcaatatct      4440
     cacctacggg gagtattgaa acgactagtg gtgtttacag aaaagaatcc gataaaaggc      4500
     ctagtcgtgc aaaatacgca gacatataaa aaaataaaag agcaaataga agctctaaaa      4560
     ataaatggca tgccacctat cattgtaata ggaaatgaaa taaaacatgt tgaaaataaa      4620
     gatgagcaac aactcatcat taataattac cacatattgc caactgcagg gcatgctggt      4680
     ataaaacgaa cacaaaatac catcaaacaa agatattact ggaaatccat ggaccaggat      4740
     atctcaaatt ttattaaaaa gtgtgtgaaa tgccaacaaa ataagtcttt ccgcacaaaa      4800
     gtacctatga caatgacaag cacagcaaaa actgcttttg agaaaatatt tttggatatt      4860
     gttggtccat tattaccaga cgcctacggg aatcagtaca tactgactac ccagtgcgat      4920
     ctgtcaaaat tcataactgc aacgccaatt attgacaagt caacaaatgc agtggccaaa      4980
     gcatttgttg aagcagtaat tttaaattat ggcgttcccg accaaatatt gacggacaga      5040
     ggtacagaat tcatgtcctc tgttttcaca aaaatttgtg atatgctgaa aattgagaaa      5100
     ctcaattcaa cagcatatca ccatgaaaca attggagcgt tagaaaattc gcataaagtg      5160
     cttgggaatt ttctacgaat ccaaacaaat aattcttatg gatattggtc tgcttgggtg      5220
     ccgtattata agttcgctta taatacaact gtgcacagcg caaccagtaa aactccatac      5280
     gagttagtat acggaaaatt atgcaatttt ccatctgagt tacaaggaga aacggaaata      5340
     agtccggtct ataacataga cgactattcc gctattctga aatttaaatt acaaacatcg      5400
     caaaagcaag cgcgcgacag tttgttaaaa tccaaacaaa agcgaattgc taaaaacacc      5460
     ggacacgacg acaaaaatct ttataaaatt aacgatctag ttctcgtcaa aaatgaaacc      5520
     ggttccaaat tggaacaaaa atttgaggga ccatatgaag tcctagaaga tttaggtacc      5580
     aatctaaaaa tgcaaattaa gaataaaata gatattattc ataagaatag agtaagaaaa      5640
     ttcatctaaa aaaaaagagt gaaggaagaa gcagaacaaa agaaaataac aataaaaaaa      5700
     aaaaaaatat aaaaacacaa aattacattt ccattataac ataatacact acacttacat      5760
     atattataac attgcaacac atacttacat atagtactta gattatattt tcacactaat      5820
     aatagtacat taaaaattat cactatagaa taatttttaa tttttcccag aagaggcgtg      5880
     tagtgggtca acacatgttt cgtgccagtt cttactgact catattacaa cacttgaggc      5940
     agtaacaaat tattta                                                      5956
//
ID   Gypsy-87_CQ-LTR repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-87_CQ_;
KW   Gypsy-87_CQ-I; Gypsy-87_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-353
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 554-554 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 353 BP; 98 A; 80 C; 65 G; 110 T; 0 other;
     tgttctactt cttgggcgac cttcttgtgg cccacattct gtgacacttt gaagtcagca        60
     gttgctttcc gtgttgtgtt taacactgac cctctttgat gggtaccaga tgttgacaaa       120
     catgcaccaa gcactttgtt atattcaagc gaccaccgaa agagtactcg atggtaaata       180
     accaaaaagt aggtgtggct tattagccat cttgttctag gaattcacca cagccaacaa       240
     ggcttaagtt taagttagca ataagtttga agttaaaata aagatcattc ctagttccac       300
     cgtcaaccgt gttagatgtc tcatttgtat caccttaccc tccttacata aca              353
//
ID   Gypsy-88_AA-I repbase;    DNA;    INV; 5989 BP.
XX
AC   supercont1.20;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-88_AA_;
KW   Gypsy-88_AA-LTR; Gypsy-88_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5989
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.20; Positions 2604081 2610069.
XX
CC   'CCACT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1744..3579
FT                 /product="Gypsy-88_AA-I_1p"
FT                 /translation="MDSFRSIRPFDTKTDQSQLATEWRKWKRSLEYYLAAS
FT                 GITGQREKRNQLLHLGGPDLQDIFDNLPGVHDIPHVAPDPPFYDVAITKLE
FT                 AHFQPCRRRTYERHVFRQIAQQPGERFGDFVMKLRVQANRCDFDLEGTSVA
FT                 ESMIIDQIAEKCVSSALRKKILERDRSLEEVVVIGKTMEDVELQCKEMSQK
FT                 EKPATVMETVHKVNAQNYFARKISHQPPGYRTPGFSGDLRRQYAYPLSRFR
FT                 SDDKANWNVQSNSRPSDQLPSDRRFAIDNRICFGCGRRGHLRGSPACIAKG
FT                 AQCLKCRSFGHFAKWCTKRLNDASNETVPPTKRIKAVYEESTQDRSIDSKT
FT                 ANKVDEDICYVMGANVFRFKVGGVGIEMTIDSGAAANLIDFNTWEKLCAKG
FT                 ATLSFSTHADRSFKAYGSSVPLNIVGMFSALIEADESKVDAVFYVAKNGGQ
FT                 SLLGDETAKKLKVLKIGYNVGSVQHSEMFPKIKGVLVEIPVDPNVRPVQQP
FT                 YRRAPFALESKIAEKLQSLLDRDIIEKVDQPSAWVSPIVPVLKDNGEIRLC
FT                 VDMRRVNRAVLRETHPLPIIEELFGGINGAIRFSKLDVKEAYHQVEIAERS
FT                 REVTTFISKQGLFR"
FT   CDS           3701..5968
FT                 /product="Gypsy-88_AA-I_2p"
FT                 /translation="MFGISCAPELFQKVMESIIAGLDGVVVYLDDLMVSGR
FT                 TQKEHDSRLALLMERIQEYGILLNEEKCVFNASRIEFVGHELSSEGIRPME
FT                 SKVAAIASFRTPANVSELRSFLGLITYVGRFIPFLADKTEVLRNLLRIGEK
FT                 FNWRDEHSKAFEEIKTAICNSKCLGYYDPKDQCIVIADASPVGLGAVLLQQ
FT                 NKAGQKRIISFASKALSDTERKYFQTEREALALVWAVEKFQLYLLGKAFKL
FT                 VTDCKPLHFLFKERTKPCARIERWVLRLQTYDYEVIYEPGSSNLADVLSRL
FT                 SVSEPTEFSVTDDSCIYQLALADIPNAITVQEVSQETLKDEVLQKVIESLA
FT                 TGIWSESVKEFKVFASELCVVQDLLLRGDRLVIPRSLRNQTLEIAHESHPG
FT                 MVAMKRRLRQKVWWPQLDKQVEDFVKKCKACTLVSTPNHPEPLIRTKMPED
FT                 AWTDLAIDFVGPLPSGHNLLVIIDYFSRFTEIIIMKQITASLTVKALHETF
FT                 CRFGMPASIKTDNGPQFISNELRDFCNQYGIDHRRTTPYWPQANGEVERIN
FT                 RSIGKRLKISQETADSDWQWDLRNFVLMHNSTPHSTTGVAPSSLMFGRRLK
FT                 DKLPGLMLKGNSVLEEIRDRDHIKKTKEAEYADKRRMAKPDELTVGDTVVL
FT                 KRVQKDNKLSTTFDPEEYMVIDRRGSDCTLQSKESTRIIHRNVSHVKKLFS
FT                 ATNNSMEQQEEPNISDTRDNELVLNSKPGSDVDKLRPRRESKKPLYLKDFE
FT                 ISNVE"
XX
SQ   Sequence 5989 BP; 1898 A; 1011 C; 1419 G; 1661 T; 0 other;
     ttggctgacg aggtggaaac gagatttttc tcgttcaatt tcagtgaaat actgcccgcg        60
     caaggttttt tttatccgat ataatttttc ggagatttgt aagtgaatct gtggtcgatt       120
     gctgaagtaa gtgttggaaa ttgaaaaatc ttctgaggtg catttttgtg tggaaaaggt       180
     ttcaaaatgg cgaaagagag gcaataagag tggtgagggc atagcaccgg taacggcgtc       240
     acaatgtttt tggttatgtt gtggatgatt ttgaattaag gtgaacgcaa acctggtgaa       300
     caagaacgga gaaaatgaaa aggtgcattg aataatttgt acgaatgctg gggagtgatt       360
     gtatttggat caattttagt gatggaggta tatggacgat agaaagaaaa aaaagtgaag       420
     cttttcgtcg atgtgcagat gtcaaacaaa atggcgttgt tgagaagaac ttggtgttat       480
     tttgaacgca gatattaatt ctatcgaaga acgaggtcac atagaaaaaa gaaaatggtg       540
     gcggataaat ggagctgtgt ttaaaaaaat gcatttggcc caacgggtat aattagtgcg       600
     tagatcgttt tgtgctgagt agtcatttcg tttggtgagt tttagtgaag gagatgaacg       660
     gatgaaaaag aaaagcaatt atgaaagaat gagaaaggtt aacatcatat tcaaatggga       720
     aatcgcagat ggtcaataag aaaacgttcg aaaggaattt atgttttacc gatgaaattt       780
     attttattga gaacgtggtt aaagaacggt gacaagtaaa agaaactgtg gttatgtttt       840
     tccgaaaagt gttaaatggc catgatacat gatcggtaga tctcagggca gattttatgt       900
     ggcattaatg tgattgctgg ctgagaggaa caaatttatg aactgtggca tagagcatgt       960
     ttacgtgtat gtttacgtgc atacattgta atgaactaca gagtttccct ggtaagtctt      1020
     tatttttttt tcctctttcc atgtctaagg atgcagaagt attgacatga ttgtctacga      1080
     ttattgacat aaagtgagta aaataataaa aacaatagac gacagttact gcaattttaa      1140
     ggttaactga atgatttgtg agatttgagg tgaaatgagt cgcgaactgg attcacttct      1200
     cagtttaatt gagtgttggt ttgatatgat ctaaagtgaa atgagtcgag aactggattc      1260
     acttaggata ttttcaggtt ttaatctgat gtggaatgag tcgagaactg gatccacatc      1320
     cttcaaaatg aaatatcgtt gtaagtatta tacagaatgt tgaaataagt ggaatggagt      1380
     acatcgaaca agaagtgaaa tgagtcgaga actggattca cttcatatat agcaaatgca      1440
     ttagaagagg ttgaatcaag aaatgtgttc attgaaaaga gatggatgat ttggaataaa      1500
     tgtgttttaa cagtgaaata caataaaaca gaacagagat tgttttttag tctcttctga      1560
     aatatctgct gagtagggtg ccctcttttg ctgtgttttt atgtattcat gttattcttt      1620
     tgcaattgcc ttttcgcttt aacatttatt ttattggata taaaatgcac ccagaagata      1680
     ttttaaaaat atttaaataa tatttaaaaa atatatatac tcaaataaaa cattttgaag      1740
     cagatggatt cattcagatc gatcagaccg ttcgatacaa aaactgacca gtcgcaactc      1800
     gcgactgaat ggagaaaatg gaaacgcagt ttggagtatt acttggctgc aagtggcatc      1860
     actggtcaac gtgaaaaacg gaatcaactt cttcatcttg gaggtcccga tcttcaagat      1920
     attttcgata atctacctgg agttcatgac attccacatg ttgccccgga tccaccattc      1980
     tacgacgttg caattacgaa actcgaagcg cattttcaac catgtcgtag gcgtacatac      2040
     gaaagacatg tcttcaggca gatcgcacag cagcccgggg aacgatttgg ggatttcgta      2100
     atgaaattac gggttcaagc aaatcgttgt gattttgacc ttgaggggac ttcagtcgcg      2160
     gaaagcatga tcatcgacca aattgcagag aaatgcgttt catctgcact ccggaagaaa      2220
     attttggaaa gggaccggtc tttggaagag gttgtggtta ttgggaagac aatggaggac      2280
     gtggagctac aatgcaaaga gatgagtcaa aaggaaaaac cggcaactgt tatggaaacc      2340
     gtacataaag tcaacgctca aaattatttt gctcggaaga tatcacatca accacctggt      2400
     tatcgtactc ctgggttcag tggagattta cgtcggcagt acgcatatcc actatctcga      2460
     ttccgttcag atgacaaagc taattggaat gtgcaatcaa attcacgtcc ttccgatcaa      2520
     cttccgagtg atcgacgatt cgctattgat aatagaatct gttttggatg cggacgtcga      2580
     ggacacctgc gaggaagccc tgcttgcatt gcaaaaggcg cacagtgcct aaaatgtcga      2640
     agttttggac attttgctaa atggtgtaca aagagattga acgatgcctc gaatgaaaca      2700
     gttccaccta ctaagcggat caaagcagtg tacgaggaaa gcactcaaga cagatccatc      2760
     gacagtaaaa ctgcaaataa agtcgatgaa gatatctgct atgttatggg tgccaacgtg      2820
     ttcagattca aggtgggtgg agttggaatt gaaatgacta ttgactcagg agctgcagct      2880
     aatctcatag acttcaatac ttgggaaaaa ctatgtgcta agggtgcgac attgtcattc      2940
     agtacccatg cagatcgctc gtttaaggca tatggttcct ctgtacccct caacattgtc      3000
     ggtatgtttt cggcgttaat tgaggcggat gaaagcaaag tggatgctgt attctatgtg      3060
     gcgaaaaacg gtggccagag tcttctagga gatgaaacag ccaaaaagct aaaagttctg      3120
     aaaataggat acaatgtggg ttccgtgcaa cattcggaaa tgtttccgaa aatcaaaggg      3180
     gtattggtgg aaattccggt tgatcccaat gtgaggccag ttcaacaacc atacagacgt      3240
     gcaccgtttg ctctggaatc aaaaattgct gagaaactgc aaagcttgtt ggatcgagat      3300
     atcatcgaga aagttgatca accttccgca tgggtgtctc ccattgttcc agttctcaaa      3360
     gacaatggag agattcggct gtgcgtagac atgcgccgag tgaacagagc tgtgctacga      3420
     gaaacgcatc cattgccgat tatcgaggaa ctgtttggtg gaataaatgg agctattcga      3480
     ttttcaaagc ttgatgtcaa ggaagcgtat caccaagtag aaatcgccga acgttcgcgg      3540
     gaagtcacta ctttcatttc gaaacagggt ctgttcaggt aaatggccca tttctgtata      3600
     cgataaatga attgatattt gaagttgttt tgtttcctgt tttttttttt ataaaaataa      3660
     aattcaataa aatgcttttt gatacagatt taaacgacta atgttcggaa taagctgtgc      3720
     tccagagtta ttccagaaag tgatggagtc tataattgct ggattggatg gagttgtcgt      3780
     ctacctagat gatttgatgg tttcaggtcg aacgcaaaaa gagcacgata gcaggctggc      3840
     tcttctaatg gagcgtattc aggagtatgg tattctttta aatgaggaaa aatgtgtttt      3900
     caatgcgtct cgaatagagt tcgtaggaca cgaattgtct agtgaaggta ttcgtcccat      3960
     ggaaagtaaa gtagccgcta ttgcttcttt tagaactccg gcaaatgtat cagagctgcg      4020
     aagtttttta ggcttgatta catatgtcgg acggtttatt ccatttctgg cggataaaac      4080
     tgaagtctta cgaaatttgt tgcgtatcgg ggaaaagttc aattggcgag atgagcattc      4140
     aaaagccttt gaagagatca aaacagccat ctgcaactca aaatgtcttg gttactatga      4200
     cccgaaagat caatgcattg ttatagcaga tgcaagtcca gtcggattgg gagccgtact      4260
     tctacagcaa aataaagcag gtcaaaaacg tatcatttcg tttgcgagca aagctttgtc      4320
     agacactgaa cgaaaatact tccaaacgga aagagaagcc ttggctctag tttgggctgt      4380
     cgaaaaattc cagctgtatt tactcggtaa agcgttcaag ttggtaaccg attgcaaacc      4440
     actacatttc ctgtttaagg aaagaaccaa accgtgtgca cgaattgaga gatgggtgtt      4500
     gaggctccag acatacgatt atgaagtaat atacgaacca ggatcaagta acttggcaga      4560
     tgttttgtca cgattgtccg tgtcggaacc aacagagttt agcgttactg acgatagttg      4620
     tatctatcaa ctggccctag ctgatatccc caatgccatt acggttcaag aagtatcgca      4680
     ggaaacatta aaagatgagg tgttacagaa ggttatcgag agtctagcaa caggaatatg      4740
     gagcgaatca gttaaggagt tcaaagtatt tgcatccgag ctatgtgtcg tacaggattt      4800
     attactccgg ggcgatagac ttgtaattcc aagatctttg aggaaccaga ctcttgaaat      4860
     tgcccatgag tcgcatccag gaatggttgc aatgaaaagg agactgagac aaaaagtctg      4920
     gtggcctcag ctagataaac aggttgaaga cttcgttaaa aaatgcaaag catgtacatt      4980
     agtatcaact cctaatcatc ctgagccgct aattcgaacc aagatgcctg aggatgcttg      5040
     gactgatctg gcaatcgatt ttgttggacc tctcccatcc ggacataatc ttctagtgat      5100
     cattgactat ttcagtcggt ttacagagat tatcattatg aaacagatca ccgcaagttt      5160
     gacggtaaag gcgttgcatg aaactttctg ccgtttcgga atgccggcgt ccatcaaaac      5220
     tgacaacggc cctcagttca taagcaacga acttcgagat ttttgcaacc aatatggtat      5280
     tgatcataga agaacaaccc cgtactggcc acaagcaaac ggagaagtcg agagaataaa      5340
     tcgatcaatt ggcaagcgtt taaagatcag ccaagagacg gctgattctg attggcagtg      5400
     ggacctgaga aattttgtct tgatgcataa ttcgacaccc cattcaacaa ctggcgttgc      5460
     accatcgtcg ttaatgtttg gaagacgact aaaggacaag ttacccggtc tcatgctcaa      5520
     agggaattcg gtactcgagg agattaggga ccgcgatcac attaagaaaa cgaaggaggc      5580
     ggagtatgca gataagcggc gtatggcaaa gcctgatgaa ctaaccgtgg gagatacagt      5640
     tgttttgaaa cgagtccaga aagacaacaa actctcaaca acgtttgatc cagaggaata      5700
     tatggtcatt gatcgtaggg gctcagactg tacactacag tctaaagaat ctacaagaat      5760
     catccaccga aacgtgtcac atgtaaagaa gctattctca gcaacgaata atagtatgga      5820
     gcaacaggaa gaacccaaca ttagtgatac tagggacaac gagctagttt tgaattctaa      5880
     gcctggatca gatgttgaca aactgcggcc acgaagagaa tcgaagaaac cgttatattt      5940
     gaaagatttc gaaataagca atgtggaata aataaaagta agggaggaa                  5989
//
ID   Gypsy-88_AA-LTR repbase;    DNA;    INV; 209 BP.
XX
AC   supercont1.20;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-88_AA_;
KW   Gypsy-88_AA-I; Gypsy-88_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-209
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.20; Positions 2603872 2604080.
XX
SQ   Sequence 209 BP; 68 A; 35 C; 36 G; 70 T; 0 other;
     tgtagtatcg gtttacaaat gttttataaa ccttgattat taacaatctt gaaatcagac        60
     atacctttat aaatgcaacc ttgttatacc atacctgatg ttgtagagta tcatacctga       120
     acggaaataa atgcagttga attctgacta tcgttgagag tacacgagcg tattatttac       180
     tgtagatccg agattgacgc gactttaca                                         209
//
ID   Gypsy-88_CQ-I repbase;    DNA;    INV; 5783 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-88_CQ_;
KW   Gypsy-88_CQ-LTR; Gypsy-88_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5783
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 555-555 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4714-5193] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           989..1969
FT                 /product="Gypsy-88_CQ-I_2p"
FT                 /translation="MTSPLEMIKLVSSLVAPYDGESSKLECTLDALKTIKP
FT                 LVTEANKAATLQSIVSRFSGRARQFVPEIDNATTIDTIMAALGGCKIKTSP
FT                 EAALVTLNATKQTGDIKTFTREIEKHTFALEQAYRDDDMPGDTANKYASKA
FT                 GIKALANGLKNKEAKTIIKASAGAGKILKLSDAINIALEESIDTPAEILLF
FT                 QQSKSNKNYRNNNGNNNNTNGNNYRNRNGNNRYHGNYNNNYNNNYNNNNRN
FT                 HNNNNRNRNDNRNNNRNNNNNYNNNNNYNNRNNNNQSNRGNGHGTNRNPHQ
FT                 IFQLNTDPNNQQNVQTQNVNNNQTGSNRENQHFLD"
FT   CDS           2035..5535
FT                 /product="Gypsy-88_CQ-I_1p"
FT                 /translation="MANSKCSFIIDTGADISIFKAGKLKPEQKVNTAKQYN
FT                 LTGVTDGSIRTLAETETQLKFDNGLIVSHMFQVVPSDFPIITDGLLGRDFF
FT                 IKYKCSINYENWLLTFNFQENTVEVPIEDNLNNSIVVPPRCEIIRRIPQLS
FT                 VDEDSVVFSEEIQRGLFCGNTIISPNTSCVKLINTTNSPILLKKFKPKIEP
FT                 LRNFELLILNNQNRVEDIIEKINFDEIPNYTHDPLKQLITKFSDIFCLPDE
FT                 KLTTNNFYEQKINLTDPSPVYIPNYKTIHSQKPVIEEQVKKMINDKIIEPS
FT                 VSNYNSPILLVPKKSSDGSKKWRLVVDFRQLNKKILADKFPLPRIDTILDQ
FT                 LGRAKYFSTLDLTSGFHQIPLEEECRKFTAFSTDTGHFQFLRLPFGLNISP
FT                 NSFQRMMTIAMAGLTPEVAFIYIDDIIVIGCSMRHHIKNLTTVFERLRHYN
FT                 LKLNPSKCKFFKSEVTYLGHKVTDKGILPDDSKYESLVKYPVPQNADEVRR
FT                 FVAFCNYYRKFVENFSTIAHPLNQLCKKNCKFDWSVQCQLAFDTLKHKLLS
FT                 PKILQYPDFAKTFILTTDASNVGCGAILSQITSEGDRPIAYASRTFTPGEK
FT                 NKSVILKELTAIHWAINYFKPYLYGNRFVIRTDHRPLVHLYGMKDPTSKLT
FT                 QMRLDLGEFNFDVIYIAGKENVGADALSRIVITSEQLQNMQMLVVNTRSMQ
FT                 KTKSMQSTQVDTSITYQAAYTVENINETRKLCALRVVNNTLQIYKNKKIMM
FT                 KIPFQPENERPTLEMTLSRLEKELKKMRIDRISLSTEDEIFKKVTTSTFKI
FT                 VANKTLQSLQILIYKPPMYVDNKNKIQEILRNFHNTPTGGHVGQTRMYLQI
FT                 RDLYRWKAMKRSITLFVQACELCKRNKIVQHTKEPQIITTTPSKPFEIITI
FT                 DTVGPLPKTNNGNRYAITIQCELTKYIVLAPIQNKEANTIARAIVDNFILI
FT                 YGKFLEIRTDQGTEYNNEVLSQICKQLKIKQTFATAYHPQTIGALERNHRC
FT                 LNEYLRCFVNEHQSDWDDWLKYYQFNYNTTPHTIHGYTPYELVFGVKANLP
FT                 HSNNQRNLDPVYNLEAYHNELKFRLQKSQNLTKSILEQQKQEKTQICNKII
FT                 NPIHIQIGDLVYLKNENRRKLDSFYQGPFRITQIRDPNCELEEPITKKKTI
FT                 VHKNRIIK"
XX
SQ   Sequence 5783 BP; 2274 A; 1100 C; 938 G; 1467 T; 4 other;
     ggtttccccg cggtagtgcc gaacgttttt gagatattat atggcgaccg tgacagggct        60
     tcgcgtcaaa gttttgacag cacgccgtag tgacccgaaa tgccaccaca ctggaagcca       120
     acgcctataa aaaaaaaata aaaattgtgg atttcctgaa aagtagcaga attctcccaa       180
     ccattaccgg gcatgtactc atgtcaacaa cgagaggact gatgacccac catcaggcca       240
     tccaggacca aaccggtgga atcatcttgg cgatcatcta ctaagacgcg atcgcaacga       300
     gcaacgagtt ggaatcgaat gaggtcacca acaacagcag cagtagcagc acccagatgc       360
     agccagatca aaaaaaaaaa aaaaaaaaca aacaaccgta aaggggagcg cgcttttagc       420
     ggacgcatat ccttacgcgg tgtttctaca cggactcaac atcggtaatc atctagaagg       480
     ggagcgtcgg ttgtgggaac ggacggttcc ascacaaccc ggaccgcaga cccgcagcaa       540
     catcagtatc gagacaacaa gtaacaagaa gtaacaattg atgaaaattt ttgaagcaaa       600
     tagttagtaa tatttttttt ttaatgaaaa atggccgacg aatgccatgg aagaactaga       660
     tttaaacata aaaaccttgc ataagatctt agaaaccctt gaaaaaaatc cttataggaa       720
     ttttctagca cacacactac tactcaaaag ggaagtagca caaaaaagtt actcgaacat       780
     agaaaaatat cttcttatta acgaagagaa gatcgaatca agtaaactta atttttatat       840
     aaaagcttct agaaacactt ttcaaaaaat cgaagacttt attacacttc gattaaatca       900
     aaagcaaaca aagcgattgt ccttkaagac agtcgcaaaa atcacaataa ttttccawcg       960
     gtcaatcttt gatataagaa gcaaagaaat gacttcaccg ttggaaatga taaaattggt      1020
     ctcctccctt gtcgctcctt acgacgggga gtcgagcaaa cttgagtgca cattagatgc      1080
     actcaagacc attaaacctc tggtaacgga ggcaaataaa gcagctaccc tgcaatctat      1140
     tgtgtccaga ttttctggta gagcgcgtca gttcgtgcca gaaattgaca atgcaacaac      1200
     tatagataca attatggcag cactgggtgg gtgcaaaata aaaaccagcc cagaagctgc      1260
     cctagtaaca ttaaacgcca ctaaacaaac tggcgatata aaaaccttca ctcgggaaat      1320
     cgagaaacac acgtttgctc tcgagcaagc gtatcgtgat gacgatatgc ccggtgatac      1380
     kgcaaataaa tatgccagta aagctggcat aaaggcactg gcgaatggtt taaaaaataa      1440
     agaagcgaaa accattataa aagccagtgc cggagctgga aaaatattga agctttctga      1500
     tgcaattaac atcgcattgg aagaatcaat tgatactcct gccgaaatac tattattcca      1560
     acaatctaaa tcaaataaaa attaccgcaa caataatggt aacaataata acacaaacgg      1620
     taataattac cgtaatcgta atggtaacaa ccgttatcac ggcaattata acaataatta      1680
     taataataat tataacaata ataatcgtaa ccataacaat aataatcgca atcgtaacga      1740
     taacagaaac aacaatcgaa ataataacaa taattataac aataacaata attataataa      1800
     tagaaataac aataatcagt caaatagagg taatggtcat gggactaaca gaaaccctca      1860
     ccaaattttt caactaaata ctgatcccaa caatcaacaa aacgttcaaa ctcagaacgt      1920
     taataacaac caaaccgggt caaacagaga aaaccaacat tttttagact agacgcaaag      1980
     tccatttttt ccgtaaacaa tgcctcagcg aattttgtat ttatcactgc aggcatggcc      2040
     aactcaaaat gcagttttat aattgacaca ggtgctgata tttcaatatt taaagccggt      2100
     aaattgaaac ccgagcaaaa agtaaatacc gcaaagcagt acaatttaac aggagttaca      2160
     gatggatcaa tacgtacatt ggccgaaact gaaactcaat tgaaatttga taatggattg      2220
     atcgtcagtc atatgttcca agtcgtccct agcgattttc ccataataac agatggactc      2280
     ctaggacgcg atttctttat taaatacaaa tgttcaatta actatgaaaa ttggttattg      2340
     acatttaatt ttcaagagaa caccgttgag gtaccaattg aggataattt aaataactca      2400
     atagtagtac cgcccaggtg cgaaataatt agaagaattc cacaacttag tgtcgatgag      2460
     gattctgttg tgttttctga ggaaatccaa cgaggattat tctgcggaaa cacaataata      2520
     tcccctaaca caagttgtgt gaaattaata aatacaacga attcaccaat tttactgaag      2580
     aaatttaaac cgaaaattga accattaagg aattttgaat tattgatcct aaacaaccaa      2640
     aacagagttg aagacataat tgaaaaaata aattttgatg aaattccaaa ctatacacac      2700
     gaccctttaa aacaattaat cacaaaattt tcggatattt tctgcttacc cgacgaaaaa      2760
     ctaaccacaa ataatttcta tgaacaaaaa attaacctca ctgaccctag tccagtatat      2820
     atccctaatt ataaaactat acattcacaa aaacccgtaa ttgaggaaca agttaaaaaa      2880
     atgataaatg acaaaattat tgaaccatct gtatcgaatt ataattcacc aattttattg      2940
     gtgcccaaaa aatcaagtga tggttctaag aaatggagat tagtcgttga tttccgtcag      3000
     ttaaataaaa aaatattggc agataaattt ccattgccga gaatagatac gattttagac      3060
     cagctaggaa gagctaaata ttttagcacc ctagacttga catctggatt tcaccagatt      3120
     cctttagagg aggaatgtag aaaatttact gcattctcca cggatactgg gcacttccaa      3180
     tttttaagat taccgtttgg tttgaacatt agcccaaata gttttcaaag gatgatgacc      3240
     attgcaatgg caggtctcac tcctgaagta gcttttattt atattgacga tattattgtc      3300
     ataggatgct caatgagaca tcacattaaa aatttaacta ctgtttttga aagattgcga      3360
     cattacaatt tgaagcttaa tccttcaaaa tgtaaatttt ttaaatctga agtaacttat      3420
     ctggggcaca aagtcacaga taaaggaata ctcccagatg attctaaata tgaatcactg      3480
     gttaaatatc cagtgccgca gaatgctgac gaagttcgaa gattcgtcgc attttgtaac      3540
     tactatagaa aattcgttga aaatttttca acaattgctc accctttaaa ccagttatgt      3600
     aaaaagaatt gcaaatttga ctggtctgtt cagtgtcaac tcgccttcga cacactgaaa      3660
     cacaaactgc tttcaccaaa aattttacaa taccctgatt ttgccaaaac ttttattctc      3720
     acaacggatg cttctaacgt cggttgtgga gcaattttat cccaaatcac tagtgaaggc      3780
     gatcgaccga tagcctacgc tagcagaact tttacacctg gtgagaaaaa taagtctgtt      3840
     attctcaaag aactaacagc aatccactgg gcaattaact acttcaaacc atatctttac      3900
     ggaaataggt ttgtaatcag aactgatcac agaccacttg tacatttata cggaatgaaa      3960
     gacccaacat ccaaattgac acaaatgcgt ttggatttag gagaattcaa tttcgatgta      4020
     atatatatag ctggtaagga aaacgtgggt gcggacgcgc tctcacgaat agttataaca      4080
     agtgaacaac tacaaaatat gcaaatgctc gtagtaaaca cgagatcaat gcagaaaacg      4140
     aaaagcatgc aaagcacgca ggttgatact agtatcacct atcaagcggc ttatacagtt      4200
     gaaaacatta atgaaacgag aaaattatgc gctttacgtg ttgtcaataa cactttacag      4260
     atctataaaa acaaaaaaat aatgatgaaa atcccatttc agccagaaaa tgaaagacca      4320
     actttagaga tgactctttc aaggcttgaa aaagaattaa agaaaatgag aatcgatcga      4380
     atatctcttt caacggaaga tgaaattttc aaaaaagtaa caacttctac atttaaaatt      4440
     gtagctaata aaactttgca aagtctacaa attttaatat acaaaccacc aatgtatgta      4500
     gataacaaaa ataaaattca agaaatctta cgaaatttcc acaatacacc gacaggagga      4560
     cacgtaggac aaactagaat gtacctacag atccgagacc tgtaccggtg gaaagcaatg      4620
     aaacgttcta ttacactttt cgttcaggcc tgcgaactgt gtaaaagaaa taaaattgta      4680
     caacatacta aagaaccaca aataataaca acaactccga gtaaaccttt tgaaatcatt      4740
     acaatagata cagtaggacc cctaccaaaa accaacaacg gcaacagata tgcaataaca      4800
     attcagtgcg aactaactaa atatatagtt cttgcaccaa tacaaaacaa agaagctaat      4860
     actatagcaa gagccatagt agataacttc atcttaattt atggaaaatt tttggaaatc      4920
     agaaccgacc aaggtaccga atataataac gaagttctta gtcagatttg caaacaattg      4980
     aaaataaaac aaacttttgc aactgcctat cacccacaaa ccattggtgc tcttgaaaga      5040
     aatcataggt gtttaaacga atacctacga tgtttcgtta acgagcatca atcggattgg      5100
     gatgattggt tgaaatatta tcaatttaat tacaacacaa ctccacatac tattcatggg      5160
     tacacacctt atgaattagt gttcggtgtt aaagcaaact taccacatag caataatcaa      5220
     agaaatctag atccagtcta caatttagaa gcataccaca atgagttgaa atttagatta      5280
     caaaagagcc aaaatttaac aaagtcaata ttagaacagc aaaaacaaga aaaaactcaa      5340
     atttgtaaca aaataattaa tcctatccac atacaaatag gcgatctggt ttatctaaaa      5400
     aatgaaaata ggagaaaact agattcattt tatcaaggtc catttagaat cacacaaatc      5460
     agagatccga attgcgaatt agaagaacct ataacaaaaa agaaaacaat agtgcacaaa      5520
     aatagaataa tcaaataaac caccgagcct agcatcaaca atgcaggtaa atttttccca      5580
     gcaatagact gcggaagtga aaaattcgga tacaaaacaa catacacata cacatacaca      5640
     acacaatgta acaaaacaca atgtaacaaa gcaaacacac aacaacaaaa attcataaat      5700
     atatcaaata aattgtaaat ggctactgga gaatggcaaa gaataatttt acttcataaa      5760
     actattcttt taaaggggga agg                                              5783
//
ID   Gypsy-88_CQ-LTR repbase;    DNA;    INV; 500 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-88_CQ_;
KW   Gypsy-88_CQ-I; Gypsy-88_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-500
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 556-556 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 500 BP; 142 A; 139 C; 92 G; 125 T; 2 other;
     tgtaatagtc tgaacaccac tgcattccca acgtacccat tcgcacttaa tttccattac        60
     catgcccgga cctcgcacaa caagaccagg ttttgtcttt caaaacacaa accctgcctg       120
     gctgtagagc ccacacacag ttagaaccac ttggcgcaag cataattgct gatgcttgcg       180
     tatagccttt ttcgaaccat attttggttc atcgacaatt ggccgggacg ctgactcctg       240
     ctgagccagc gcaagggttc aacccagtac aagccaacwc cagaagccta tactgtagca       300
     cgtaagtgtc accactcaaa ttacatgtga tgcaacaaat ttgactagca taaatacccg       360
     agttcaaata aacaaaaats agtcttttcg gctggaacat caaggcgact tgtctacttt       420
     atttcgagct ccgagctggt tactgctcct cgcagtctac cacaccttgg atagctctta       480
     atgcaaagaa agtccctgca                                                   500
//
ID   Gypsy-89_AA-I repbase;    DNA;    INV; 7106 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-89_AA_;
KW   Gypsy-89_AA-LTR; Gypsy-89_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7106
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions 1508204 1501099.
XX
CC   Positions [3542-4051] - Reverse transcriptase
CC   Positions [5156-5632] - Integrase core
CC   'AATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..2849
FT                 /product="Gypsy-89_AA-I_2p"
FT                 /translation="MAVSIQELVAEKLKQHFFDIRVDHLNEDELDFELEIR
FT                 EIVFDDNESMTRKRRALREMLKNEKSAENPVYMLKRSPSEDFQACIAKFAE
FT                 IEGTIKISAKGLPPRCQSRLLHLGNRLLLLEASISEEDREKLMKMQEAVLS
FT                 YLNRYFYGKRSVVSEEQEDTGIDRLFIESENPVGRQDEAIGQITQPSSTGQ
FT                 MKTGSLLEDEKDIVESLQRLGLLNTNNLARVEVTDVKDALMSLEYEINLLR
FT                 RFRDLHSILPDNQTPTIIDAHLPQANRTTYTGTIPKNTRSSLAASSHSITS
FT                 GGIDSFASIDPTVHNSMSSFVSSGTTPSYSIARAVDTRLVPELSTSYPMIN
FT                 FQTLTSTTSTGPRVTSTMYAANPYLTMGCLSTSQVQFNVPATIGFNTTAAS
FT                 QFERESMNWTRPSVDPWRATISPVTNSIPTLTSTKGLQGQQMSTNNNFNSL
FT                 TSNSQLGHHTAQSVQHPASTMEACRGQFGHKSLPVSKWKLNKYAGTDQGLK
FT                 LNEFLVLVSQLALSERISEPELFDSALHLFTGPALNWYMTMRSSGRLASWQ
FT                 HLVSELRKAFAHPELDSLVRTRIYQRRQQRNETFQEYYYDMESMFRSMIVP
FT                 MSDAEQLDVLKRNMRSDYKKTLLWKPIFSLPDLLEAGHIIDASNFSLYAKV
FT                 FGHEKTSNAVSEIKIGKGDPKNFSNRPPFKPTTQQGSNPSKFKDDNSKKKG
FT                 VTEEKKTNQPIQAGRSKEMDPKEGPSKPTRTLDMLIEAHRPPRSYECLYCR
FT                 HTNHALEQCRSFRGSICMVCGFKGFETQNCPYCQKNGLQTARNRGPSNPNA
FT                 "
FT   CDS           3239..6010
FT                 /product="Gypsy-89_AA-I_1p"
FT                 /translation="MDFWQKFQIWPTIRDCAATLVDEATEKGPQQTLSKSL
FT                 ESNQLSEIKNLFLGARPDGLTVTPLIEHRIEIADEWKDKPPVRQYPYTLSP
FT                 KVQQKVAEELDRMLAIGIIERAHSDWCSNVVPVIKPTGKVRLCLDARKINE
FT                 RTVRDAYPLPHPGRILGQLPQARYLSTIDLSEAFLQISLEEKSRKFTAFSV
FT                 QGKGMFQFTRLPFGLVNSPATLSRLMDRVLGHGELEPNVFVYLDDIVIVSE
FT                 TFEHHVQLLREVARRLAEANLSINIDKSKFGVNELPFLGYLLSTEGLRPNP
FT                 DKIQAIVEYERPNTVTKLRRFLGMANYYRRFIEDFSGITSPLSDLLKTKSK
FT                 VLGWNEKAEQAFTLIKEKLISAPVLACPDFSKEFTLQTDASDVAVAGILTQ
FT                 IQEGFERVIAFFSHKLTTPQRNYHACEKEALAVLLSIEAFRGYIEGSHFTV
FT                 ITDSSALTHVMTAKWKTASRCSRWCLELQHYDMTIRHRRGKENVVADALSR
FT                 SVATVVTSNISNPTVKITPDSLDSAQAIYDSLLEKVYEEPDDHVDFRVRDG
FT                 VLYKYVANTSEPHDDRFDWKIIPSPVERNGIIQECHDNSMHPGTDRTLSRI
FT                 RLRYFWPRMVLDVREYVSKCTICKESKAPNIALAPPLGEKRVTSHPWQIIA
FT                 LDFIGPLPRSRNQNQYILSVVDLFSKWIMLVPFRKIDSKNLCKVLRDQWFY
FT                 RNSVPEVLITDNATCFLSHEFRALCTRFDIRHWLNSKYHSQANPVERVNRT
FT                 VNTAIRTYVKSDQKLWDSRISEIEAILNSSAHSATNLTPFFTTHGHEMFLK
FT                 GCDHGIGEDDPQISVADREKRQTELFNAINKLVQDKLEKAHQESHKRYDLR
FT                 HRTYGKPFKVDQMVYRRNMKQSSAVEDYNAKYGPQYLPSKIIRRIGSSSYE
FT                 IADLEGKSLGIWPAMHLKPG"
XX
SQ   Sequence 7106 BP; 2232 A; 1473 C; 1495 G; 1906 T; 0 other;
     attggcgatc caaccaaatc caaaaatatt cttcttataa gaaatttttt tcacttactc        60
     ggggtgaatc acgattctta ctctcattca tcgtgatcgt atcgtggtgt tgtagggaag       120
     tattcgtccg aaaagacagc taaaaatctg tttgatccat ctcaaccatt ataatttgat       180
     tatagttact attcagaagc ttttctggtc tatttcttat agttgtaatt gattttctat       240
     atgtcgttaa ggaatgaatt ggaatctaga ataagttaaa aatcgaatga attggaattg       300
     aaaattaata ttaaggaact gaattaaaat tgtaaataac tgaattacaa agaattatta       360
     ggatttaatt acttttatag aattatagaa ttgaattatt tgattgaaca attgaactct       420
     ctttattcta attttataca aaaatggctg ttagtataca agaattagtg gctgaaaagc       480
     tcaagcaaca tttctttgac attcgtgtag atcatttgaa tgaggacgag ttagattttg       540
     aactcgaaat cagagaaata gttttcgatg ataatgaatc catgactagg aagaggcgag       600
     ctctcagaga aatgcttaag aatgaaaagt cagcagaaaa tccggtttac atgctcaaac       660
     gaagtccatc agaggatttc caagcctgca tagctaaatt tgcagagatt gaaggaacga       720
     taaaaatttc agcgaaaggg ttgccaccca gatgtcaatc tagattactt catctaggaa       780
     accgattgct tctgttagag gcttcaatat cagaagaaga cagggaaaaa ttgatgaaaa       840
     tgcaggaagc agtgctctcg tatttgaata ggtattttta tggaaagcgt tcggttgtat       900
     ctgaggaaca ggaggatacg ggaatcgata ggttgttcat tgagagtgaa aatccagtag       960
     gacgtcagga tgaggcgatt ggccaaatca ctcaaccgtc ttcaacgggg cagatgaaaa      1020
     cggggtcatt gttggaagac gaaaaggaca tcgtcgagtc cttacagaga ttaggcttac      1080
     taaacacaaa taatttggcg cgagtcgagg taaccgatgt gaaagatgcg ttaatgtctc      1140
     tagagtatga aattaattta ctcaggagat ttcgagattt gcattcgatt ttaccggaca      1200
     accagactcc gaccataata gatgcacact tgccacaagc gaatcgtacc acctatacgg      1260
     gaacgattcc taagaataca aggtcgagtc tagctgcttc tagtcattca atcacttcgg      1320
     gtggtataga tagttttgct tcgattgacc ccactgttca taattcgatg agttcttttg      1380
     tgtcttcggg cacaacccca agctattcta tagcgagggc cgttgacact aggctcgttc      1440
     ccgagttatc gacctcgtac cctatgataa actttcagac tctgacatcg acaaccagca      1500
     caggtcctcg tgtcacaagt accatgtatg ccgccaaccc atatttaaca atgggttgcc      1560
     tgtcaacatc tcaggttcaa tttaacgtac cagcaactat cggtttcaat accaccgctg      1620
     catcacagtt cgagcgcgaa tcaatgaatt ggactcgacc gtctgttgat ccatggaggg      1680
     caacgatttc accggttacg aattcaattc ccaccctgac gtctacaaag gggttacagg      1740
     gacaacagat gagcactaac aataatttca atagtctgac ttctaatagt caattagggc      1800
     accatactgc tcaatccgtt cagcatccag ccagtaccat ggaagcatgt cgtggccagt      1860
     ttgggcacaa atcgcttccg gtttcgaaat ggaaactgaa caaatatgcc gggaccgatc      1920
     agggacttaa gctgaacgag tttcttgttc tggtgtcaca gctagcttta tcggaaagaa      1980
     tttctgagcc cgagcttttc gattctgctt tgcatttatt taccggacca gcccttaact      2040
     ggtatatgac aatgcgatct tcggggaggc tggcaagctg gcaacatctt gtcagcgaac      2100
     ttcgtaaagc ttttgcgcat cccgaacttg attcgttggt acgcaccaga atataccaaa      2160
     gacgtcagca aaggaatgag acatttcagg agtactatta tgacatggaa agtatgtttc      2220
     gatcgatgat agtacccatg agtgatgcag agcaactgga tgttctcaaa agaaatatga      2280
     ggtcagatta taaaaaaacg cttctttgga agccgatctt tagcttgccg gatttgttgg      2340
     aagcagggca cataattgat gcatctaact tttcgttgta tgctaaagta tttggccatg      2400
     aaaaaacctc caatgccgtt tcagaaatca agatcggcaa aggtgatccg aagaatttca      2460
     gcaatcggcc accgtttaaa ccaactactc agcagggttc taacccttct aagttcaagg      2520
     atgataattc caagaaaaag ggagtaactg aagaaaaaaa aactaatcaa ccgattcaag      2580
     caggtcgatc caaagaaatg gaccctaagg aaggtccctc gaaacctacg agaactttag      2640
     atatgctcat tgaggcacat cgaccccctc ggagttacga gtgtctttat tgtcgacata      2700
     caaatcatgc tcttgagcaa tgtagaagct ttaggggttc tatatgtatg gtttgtgggt      2760
     tcaagggatt tgaaacccag aactgtcctt actgccaaaa aaacggccta cagacggccc      2820
     gaaatcgcgg accgtcgaac ccaaatgcgt aaatccagta ccaactggaa tcactcttgc      2880
     cgaattctgg gaaccagttc gggaagacct atattctagt gatgaatctc aggttctcaa      2940
     tattgccatt ggagatactc acgatagtcg accttacgcc aatataaaaa tttacgggcg      3000
     gccatccaag ggcctgctgg actcaggaag tcaattgacc ttaataagcg aagaagtgtt      3060
     tcgcaaattg aaccgctcga aactaagacc cttgagtagg ccgattattg tacgttctgc      3120
     aaatggatca gagctagaag ttcttggtca aatttctatt ccgttcaact ttgctggtca      3180
     cataaaaata atccaaaccc tcgtagtaaa gaccttatct gtagactgcc tactgggtat      3240
     ggacttttgg caaaaattcc aaatatggcc cactattcga gactgtgccg ctacattagt      3300
     tgacgaagca acagaaaagg ggcctcaaca aactttgtca aaatctttag aatcaaacca      3360
     gctctcagaa attaaaaatc tctttttggg tgctcgccca gatgggctga ccgtcacacc      3420
     tctgatcgaa catcggatag aaatagccga tgagtggaaa gacaaacctc cggtacgtca      3480
     atatccgtac acgctatctc caaaggtcca gcaaaaagtg gctgaagaat tggatagaat      3540
     gttggccatt ggcataattg aaagggcaca ttctgattgg tgctcaaacg ttgtaccggt      3600
     tatcaaacca acaggaaagg ttcgtctctg cctagacgct cgcaaaataa acgaacggac      3660
     ggtacgtgat gcctatccct tgccccaccc tggacgaatt ttgggtcaat taccccaagc      3720
     aaggtacctg agtaccatag atttatctga agctttccta caaatctcct tagaggaaaa      3780
     atcgcgaaaa ttcacagcgt tcagtgtaca gggcaaggga atgttccaat tcaccaggtt      3840
     gcctttcgga ctagtcaata gtcccgcaac cttgtcacgg ttaatggacc gagttctggg      3900
     acatggtgaa ttggaaccga acgtcttcgt ataccttgac gacattgtca ttgtatcgga      3960
     gacgttcgag catcacgtac agctccttcg ggaagtagcg aggcgtttgg cagaagcgaa      4020
     tctctccata aacatagata agtctaagtt cggtgtcaat gaattgccat tcctaggata      4080
     ccttttgtcc accgaaggct taagacccaa cccagataag atacaagcta ttgtggaata      4140
     cgaacgacct aataccgtca ccaagctgcg ccggttccta ggaatggcaa attattatcg      4200
     tcgtttcata gaagatttta gtggcatcac gtccccgcta tcagacttgc tgaagactaa      4260
     gtccaaggta ttgggctgga acgaaaaggc tgaacaagca ttcacactaa ttaaggaaaa      4320
     gctgatatca gcccccgtac tagcgtgtcc agatttttca aaagagttca ccctccagac      4380
     ggatgcgagt gatgttgccg tcgcgggcat tttaactcag attcaggagg ggtttgaaag      4440
     agtcattgct ttcttttcac acaaactcac aaccccgcaa agaaattatc acgcgtgtga      4500
     aaaggaagca ttggctgtcc tcttatccat agaagcattc cggggataca tcgaaggctc      4560
     tcatttcacg gttattaccg actcgtctgc cctaacgcac gtcatgaccg ccaaatggaa      4620
     aacggcatcc cgatgtagta gatggtgtct ggagttgcag cattacgaca tgaccatacg      4680
     tcatcgtcga ggaaaggaaa acgttgttgc cgacgctctg tcgcgcagcg tggctacagt      4740
     cgtcacaagc aatatttcca atccaaccgt caaaatcacg cccgattccc ttgactctgc      4800
     tcaggcaatc tatgacagtt tacttgaaaa agtatacgaa gaaccagacg atcatgtgga      4860
     ctttcgtgta cgggatgggg tgctttataa gtatgtcgcg aacactagcg aaccacacga      4920
     tgatcggttt gactggaaaa ttatcccttc tccagttgaa aggaatggta tcatccagga      4980
     atgtcatgat aactccatgc atccgggaac cgatagaaca cttagccgta tccgtctacg      5040
     atacttctgg cctcgaatgg tcttagacgt gagagaatat gtatcaaaat gcaccatctg      5100
     taaggagtct aaggccccga acatagccct agctcctccg ttgggagaga agcgtgttac      5160
     gtcacaccct tggcaaatta ttgcactaga tttcataggg ccactacccc gaagccgcaa      5220
     tcaaaaccaa tacatattat ccgttgttga tctttttagc aaatggataa tgcttgtacc      5280
     atttcgtaag attgacagta aaaacctttg caaggtatta cgagaccaat ggttctaccg      5340
     gaattcagtc ccggaggtac ttatcacaga caacgctacg tgttttctgt cccacgaatt      5400
     ccgggcgtta tgcacgaggt ttgatattcg gcattggctc aattctaaat accactccca      5460
     ggcaaatcct gtggagcggg tgaatagaac cgtcaatacc gccatacgta cctacgtaaa      5520
     atccgatcag aaactatggg actccaggat atctgaaata gaggccatac tgaattcttc      5580
     agcacactcg gctacgaacc tgactccatt cttcacgact catggtcatg aaatgtttct      5640
     aaaaggatgt gaccacggta ttggtgaaga tgatccacaa atttcagtag ctgatcgtga      5700
     aaagcgccaa actgaattat tcaatgcaat caataaactt gtccaagaca aacttgagaa      5760
     ggcccaccaa gaaagtcata aacgatacga tcttcgccat cggacttatg gaaaaccatt      5820
     caaggtagat caaatggttt acaggcgtaa tatgaaacag tctagtgctg tagaagacta      5880
     taacgccaag tatgggccac aatatctacc gtcgaaaata atccgtagaa taggtagctc      5940
     ttcttacgaa attgccgatt tggaagggaa atctttggga atctggccag ctatgcatct      6000
     taagcctgga taatataaat ttactatctg ctattgtatc tttgataaga atcacagacc      6060
     tatccaaaca gacgaactcc tgcctgctaa atccgacgaa aattctagag tcaacgacct      6120
     tcgctttccg ctcaagtagg gtaaatagga aaggtaaaca atctaaacaa ttgtcctctt      6180
     tatagctcat agctcgcgag atatcttaaa gaaaaattaa ggtttgtatt acgaaagtag      6240
     ttgcttgtac aagtaggaaa catcatagga tatcattttt ttttgtttgc ttaaagcatg      6300
     aatgctttag aataaaatag ttccataaac tcttatcacc gtagtttagt gagtttcact      6360
     tcacgtcgcg atgttgatgc agccgttctg ttttgctctc tctattcgtc ggcgcgagaa      6420
     actcgtaaaa taatcatagc tagattaatg atcgccaacg ttttaggctc aaaataacga      6480
     tgctataatt atagctaccg aggggaccag tcgttttgac gaaaacggct tgaccacaga      6540
     tttaacacag actgtaatct tcatttttct tacagaatgt ttattggaaa aaatctaata      6600
     tcgaataggt agatcttggc ctatttgaat aatcaaaaga tagtaatggt cttttgatat      6660
     agttgtgcta tgaagacgca aactgtcttc tagagaaccc aggaagagaa gagtaaaatt      6720
     tagctaatta gaataagaat aattaattaa aaaataaaga tttcttaaga ggtgtatcta      6780
     cacgaagacc caattgaaca cagcctatct ttaaaaatcg aatatgaata atataaatgg      6840
     aataagaata tgaattatat aaatggacaa tatagacaaa ttgcataact ttcggatacg      6900
     tcctttagaa aacaattgca acgccaaaga aataacagat tctcgcagct agtgactata      6960
     acaaatccga ataaaagcaa ataaggatcc ggatatgggc ttaatagaac gacggaattt      7020
     tctggcaata ctggattcag gaacggagaa aaaaaaaaaa tactttgcat agctcagtat      7080
     tttttttatt ttgagaggga gatgat                                           7106
//
ID   Gypsy-89_AA-LTR repbase;    DNA;    INV; 1309 BP.
XX
AC   supercont1.279;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-89_AA_;
KW   Gypsy-89_AA-I; Gypsy-89_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1309
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.279; Positions 1501098 1499790.
XX
SQ   Sequence 1309 BP; 347 A; 317 C; 354 G; 291 T; 0 other;
     tgttaccaac ttagtggaaa caatagtagt aaccatccct gggaagtaga ataatctgcc        60
     agggctatga gttgtttttt tattgatagg agtttgagtt aattagacgc aatggaaaat       120
     aactttaaat ttgttctaaa aactataccc ttagtcttca atacccctcg tctagaggat       180
     tgtcggagta gcgcatctgc tattctaagc aggtggtatg actgattccg gatgaggttg       240
     aggagagaag agagagagag agaggaaact gtagcgaaga gagtagagaa gggagtggaa       300
     gaaaggcgat acccggtgaa ggattaattt tggctagggc ggcagaaagt accgaactac       360
     cacgaaggtc ggatgggaaa agttaattgg tgcgtgtcga agtgagtccg atagaagaag       420
     tgaccgactg gtgaagaaat agaccatccg agtgtagcca gctggtcctc cgaaagcgtt       480
     gacgggaaga caatccacgt agtgaggccg gcgacgtggt caagtacgct gagacgacct       540
     agggtgatat cccatcccag gaggctgttg gagccaacct tatccaatcc ccgaaggaag       600
     ataaccccaa taggcagcgc aacccgcgct tcggtgtagg aaccacctga ttcgacccgt       660
     ggaattcgtc cagtggagct actaacttcg gagaggctgg cgagccccgt gctggtgtcc       720
     gacgagtccc atcagctatc gtcgaggcac acgccacgtg cgagtagtac cgaccgctat       780
     ggaggtgaag gccgagggag gactgatggg ttagtccccg ctctcttgtg cccaacatcc       840
     gatgtggtac taccccgtcc gcgagcacga gggacgtcat cccactacca cgtggtctac       900
     caaccttacc cccacaagga tccacagaag ctagatcaga acccgaagac ccagaggagc       960
     agcgtggtaa caagctacag atcctgcatt cgacgaggcc gcatatctgc cagccggtgt      1020
     gtagcagtcg gcaagtaaca accataaatg ttccctcacc tctcgctctc tctcgctaag      1080
     catgcacatc tatgggcccc aacgaacccc ccccccaaac aatgtaattc cttcttaata      1140
     aataatgttt aagcttactt cttgtgtttg ttgccacttt acgaaagatt gcctactttc      1200
     cctagtgctg ggctactctt ggttcacggg tgtggttgtg tgagttctcc ctgagtaagc      1260
     tgacgccgac cctgagaggg tatagccgtg gggctagccg taattaaca                  1309
//
ID   Gypsy-89_CQ-I repbase;    DNA;    INV; 3962 BP.
XX
AC   AAWU01006656;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-89_CQ_;
KW   Gypsy-89_CQ-LTR; Gypsy-89_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3962
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 557-557 (2011).
XX
DR   GenBank; AAWU01006656; Positions    9913   13874.
XX
CC   Positions [3069-3428] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           915..3554
FT                 /product="Gypsy-89_CQ-I_1p"
FT                 /translation="MGTKSSSSRLIIFDRTANTRFLIDTGSDLSIVPATTK
FT                 EKQGSSTQWQLHAANGTVIRTFGQRFVTTDLGLRRRFSWNFVIADVSAPII
FT                 GADFLAHFGIVVDLKRRRLVDSTTKLHSIAGLATPTVYNVTTVLADHPFKD
FT                 LLDEFRDVTLPSTIRSEVQHDVTHHIQTKGPPLSCKSRRLPPDKLQAAKQE
FT                 FETMLELGICRHSSSSWASPLHCVLKKNGAWRFVGDYRRLNAVTVPDRYPV
FT                 PHIHDLLNALHGKSIFTTLDLERAYHQIPVEPCDIPKTAVITPFGLFEFTR
FT                 MQFGLCNASQTFQRFMHKIFGDLDFVTVFVDDICIASANEDQHRDHIRCVL
FT                 ERLHKNGLVINPAKCRFAQREVEFLGYLVNKDGLRPLPERVQALQDYKLPG
FT                 TVKELRRFLALINGYKRFLPHATDEQAALRKLIPGNRKNDTRKLEWCDEAR
FT                 AAFDNCKQSIASAALLHYPDPTKRLSLMVDASNTSAGAVLQQFEHGRWAPL
FT                 GFFSQKFSEAQTRYSTFGRELTAMKLAVQYFRYLVEGRSFTIFTDHRPLTQ
FT                 ALGSTSNNHLPHEERYLRYISQFTSDVQHVSGSKNEVADALSRVATIGFPS
FT                 SVNFEEVAAEQINDEELKRLLNDGRSSLKLEPKPLPGTQAQIYCDVSPEGR
FT                 VRPYIPEKLRCMILDTLHKVSHPGVRGSRKLLGDRFVWPSMHKDVRKYVQS
FT                 CDGCQRAKVHRHTSSPLQSFAIPKSRFQHVHIDLVGPLPTSNGNRYVLTMI
FT                 DRFTRWPEAVPLVDMTAETVAQALLTGWISRFGIPETITTDQGRQFESELF
FT                 RELSQLLGIKRIRTTAYHPQANGMVERFHRTMKAAIMCVTRNTGATTPLIL
FT                 LGLRSSFREDMKCTSAECVRSNAEAAW"
XX
SQ   Sequence 3962 BP; 959 A; 1156 C; 1019 G; 828 T; 0 other;
     ctggtgacca ccgtcgcgaa tgtaacggaa atcaatttct tcgttgcgca aaataccgaa        60
     aaaaacgcct ttttcttcgt ggaaactctg ctgccgtccg ccatcttgga tgcaaaaatg       120
     acgcttcccg gttcgaacgt ctcgcttcca gcgtctccga cttctgtcgc cgctgtcgcc       180
     gtgaaattgc cggagttttg gaagacggac ccgctgatgt ggttcgccca agcggaggcc       240
     cagttcgcgc tcgctggtgt aacttccgac caaacgatgt actaccacat tatctccaag       300
     gtggaccaaa cagttctgcg acacatttcc gacatcgtcg cgaacccccc agaagagaac       360
     aaatacccgg cggtcaaggc gcgcctgatc gcccacttcg agttgtcggc cgaggaaaag       420
     ttcgagaagc tgctcaattc ctgcgatctc ggagacgccc gtccgtcgca tcttcttgcc       480
     aaaatgcaag atctatccac gggcctgaac gtgagcgctg gattgatgag gatgctcttc       540
     ctgcagcgga tgccagtcaa cattcgaacg gtcctcgcgg tgtccaacgc caagctcgac       600
     gagctcgctg ccatggccga caagatgatc gacgtcgccg gtccgcaggt ggctgcgacg       660
     caacaagctg ctccaacaag cgtacaggac ctggaagctc aaattgccgc cctaagcagc       720
     caactgcgac gattggaagc aaatccgaac cgaggaagat ctcgctctcc gtcgcggcgc       780
     cgcagcgctt cgcagtcgtc ctcgcaagaa atttgctggt accatcgcaa gttccgagac       840
     gcggcccaac agtgccgttc cccctgccaa tacagctcaa aaaactagat tccttctcac       900
     tcgagacggc ggagatggga acgaaatcga gtagcagccg tcttatcatc ttcgatcgga       960
     ccgcaaacac gcgcttcctg atcgataccg ggtccgacct ttctattgta ccggccacaa      1020
     ccaaggaaaa acaaggcagt tcaacccagt ggcagttgca cgctgctaac ggaacggtca      1080
     ttcggacttt tggacaacgc ttcgtcacaa ccgacttggg tctgcgccgt agattcagtt      1140
     ggaattttgt gatcgctgat gtgagtgcac ccataatcgg agctgacttt ctggcgcatt      1200
     ttgggatcgt cgtcgacctg aaaaggcgtc gactagtcga ctcgaccacc aagctccact      1260
     caatcgctgg gttggcaacg ccgacggtgt acaacgtgac gacggtgctc gctgatcatc      1320
     cgttcaagga tctgctggat gaattccgtg atgtgacact tccgtccacg attcgctcgg      1380
     aagttcaaca cgatgtcacg caccacatcc agactaaagg ccccccgctg tcctgcaaga      1440
     gccgtcgact tcctccagat aaactgcagg ccgccaaaca agaattcgag acgatgcttg      1500
     aactgggaat atgccgtcac tcgagcagct cctgggccag cccactgcac tgcgtgttga      1560
     agaagaacgg agcttggaga ttcgtcggcg actaccgacg tctgaatgcc gtgacggtgc      1620
     cggaccgata cccagttccg cacatccatg accttctcaa cgcgttacac ggtaagtcca      1680
     tattcaccac tttggatttg gagcgggcct accaccaaat tcccgtagaa ccgtgcgaca      1740
     tcccgaagac tgcggtgatc acgcccttcg ggctgttcga atttacaaga atgcagttcg      1800
     gattatgtaa cgcgtcgcag acgttccaac gcttcatgca caagattttt ggggatcttg      1860
     attttgtgac cgtttttgtt gacgatattt gcatcgcctc agccaacgaa gatcaacatc      1920
     gcgatcacat tcggtgcgtc ctggaacgtc tgcacaaaaa tggtctggtc atcaaccctg      1980
     ctaaatgccg gttcgcgcag cgtgaagttg agtttctcgg gtatctcgtg aacaaggatg      2040
     ggctgcgacc tctacccgaa cgagttcaag cgcttcaaga ctacaagctg ccaggtaccg      2100
     tcaaagaact ccgtcggttt ctcgctctga tcaacggcta caaacggttc cttcctcacg      2160
     ccacagatga acaagctgcc ctgcgaaagc tcatacctgg aaaccgcaag aacgacacaa      2220
     gaaaactcga gtggtgtgac gaagcacggg ctgccttcga caactgcaag cagagcatcg      2280
     ccagcgcagc cctcctgcac tacccggacc caacaaaacg gctgagtttg atggtcgatg      2340
     cgtcgaacac gtcggccggc gccgtgctgc agcagtttga acacggccga tgggctcctc      2400
     ttggcttctt ctcgcagaag ttctctgaag cgcaaaccag atattcaacc ttcggaagag      2460
     aactaaccgc aatgaagctg gctgtgcagt acttcaggta cttggtcgaa gggcgatcgt      2520
     tcaccatctt caccgatcat cggccgctga ctcaagcact gggatctaca agcaacaacc      2580
     acctaccaca cgaggaacgg taccttcggt acatttctca gttcacttcg gatgtccagc      2640
     acgtcagcgg tagcaagaac gaagtcgcag acgccctgtc tcgtgtggca accatcgggt      2700
     ttcccagttc ggtgaacttt gaggaggttg cagcggaaca gatcaacgat gaagagctga      2760
     agcggctgct taacgatggt cgttcatccc tcaagttgga gccgaagccg ctaccgggta      2820
     cacaagcgca aatctactgt gatgtatccc ctgaaggtcg agtccgccct tacatccccg      2880
     agaaacttcg ctgtatgatt ctcgacacgc tgcacaaggt gtcccatcca ggagtccggg      2940
     gaagccgcaa actgctgggt gatcgattcg tctggccgtc gatgcacaag gacgtgcgga      3000
     agtacgtgca gtcttgcgat ggctgtcagc gtgcaaaggt ccatcgacac acatcttcgc      3060
     cgctgcagag cttcgccatt cccaagagca gattccaaca cgtgcacatc gatcttgtcg      3120
     gaccactccc gacatccaac ggaaaccgct acgtcctgac aatgatcgat agattcacaa      3180
     gatggccaga agcagtcccg ttggtcgaca tgacagcaga aaccgttgct caagcactgc      3240
     tcactggatg gatatctcgc tttggcattc cggaaaccat aacaaccgat caaggacgac      3300
     agttcgaatc cgaactgttc cgggaactga gccagctctt gggaattaaa cgcattcgga      3360
     caacagcgta tcaccctcag gcgaacggca tggtcgagcg cttccacagg acgatgaaag      3420
     ctgctatcat gtgtgtgact cgaaacactg gagcgacaac tccgttgatc ctcttggggc      3480
     ttcgatcgtc cttccgggag gacatgaaat gcacatctgc cgaatgtgta cggtcaaacg      3540
     ctgaagctgc ctggtgagtt ttcgaagcgc cggcgcgagg ggaagtggac cgctcggagt      3600
     tcgtccgttc gcttaagcaa actctccaac aactcgcacc tgttggcggt agcaaccacg      3660
     caaagcccaa ggtatttgtg ccgaaggacc tgaccacttg cgactttgtg ttcgttcgag      3720
     ttgaccacgt caagcggccg ttgcagcaac cgtacgaggg accttacgag gtcgtcaacc      3780
     gaagcagcaa gttcttcgat gtccgcatcg gtggcaagga gaagcgcata gccatcgaca      3840
     ggatcaaacc agcattcaac tccaccgagt accacgacca aagcccagac gaagacgcca      3900
     aaactaaagt tacaccttcg ggacatcgtg tccgattcct cgtgtaactg gggggagccc      3960
     tg                                                                     3962
//
ID   Gypsy-89_CQ-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   AAWU01006656;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-89_CQ_;
KW   Gypsy-89_CQ-I; Gypsy-89_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-178
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 558-558 (2011).
XX
DR   GenBank; AAWU01006656; Positions    9735    9912.
XX
SQ   Sequence 178 BP; 40 A; 51 C; 35 G; 52 T; 0 other;
     tggtggttcc cacgcgtcgt gtagtgccca ccctcattgt tgctacactt ggtagcaaaa        60
     ccaacaaacg tcactctagc acttcctatc gcgctattcg gatcgttgca aaataaacca       120
     agtttagtta agttaattcc ggtcgtttta ttcgtccgcc gttccgaggt tccccaca         178
//
ID   Gypsy-8B_PPo-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Gypsy-8B_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-127
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2976-2976 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 6bp TSD.
XX
SQ   Sequence 127 BP; 31 A; 28 C; 27 G; 41 T; 0 other;
     tgttgtgtat gtgtatgtat tgtacgtgtt tccgaactgg cggctgtgcc cgccgtctat        60
     gtgacagcta cttaaataaa cagtctgtgc taagcaagct atctttcaat actcccaata       120
     cgtaaca                                                                 127
//
ID   Gypsy-8_AA-I repbase;    DNA;    INV; 7352 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_AA_;
KW   Gypsy-8_AA-LTR; Gypsy-8_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7352
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 985-985 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5238-5720] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           478..2814
FT                 /product="Gypsy-8_AA-I_1p"
FT                 /translation="MNYYHINEQCLEEDEINYELRIRGYSTDGSLETRRRT
FT                 LRRLLRESEGMEVKQTWYSIEDEYVGIPMKLQQIELAIKNRVGAGCLSRLV
FT                 HLHKRVRRYRVISFDQREKQRMLLNAVSQMALNYFGVNLDNLGQAVPLMTL
FT                 VTGPEETNVVSSVPESRDDLAEGKRLGVFPKQQSLNEDLILFSPMPMDGSR
FT                 VDPRRHTFPVAGPQAFRGQAIQPILVPQPQAFDPQVEDDVGGDCESPHFKS
FT                 SIQVQLNRRDPAKSATPIPKDENAFEVNPFERPNVVTDMGQASLRQNPPLS
FT                 NISPVLQDCFSVDGSRDSSSLSPQEQTGKKISLNEYVHVSEIETYIKSCIS
FT                 QILTSDVVDNLAGRLKTVGLKEQNGLEIPYAWSGRPREAESPITHSFAQPK
FT                 PSIPIKNVHGFPSYTGQKVGNPSTEWRPPIPNVSSSSMVPPLYPTTTPEPF
FT                 PNPYRRNDLLNQQVHLPPNSSTFLGPLGTGNPLSNNFVPNHYLRQRLPHQT
FT                 CNIIEKWPKFSGDSNAVPVVDFLRQIEILSRSYQVTQEELRMHAHMLFKGD
FT                 AYVWFTAYDDKLDSWPTLTAMLKMRYDNPNRDRAIREDMRNRKQKPNELFS
FT                 AYLTDIEAMSQRLVRKMSAEEKFDLVVENMKMSYRRRLALQPIQSLDHLAQ
FT                 LCYQFDSLENNMFLTKPAMKPAVLNQILAEEELEDYEEVSEEEDATVMAVR
FT                 PKMSRKDANKSSGSGITSESQEAGQPLCWNCKNFGHMWRECSQRKTLFCHI
FT                 CGHNNTTAYQCPQKHNLKPREPADSKNE"
FT   CDS           2871..6095
FT                 /product="Gypsy-8_AA-I_2p"
FT                 /translation="MSNFKYFSQNYNINTCFRRCPHLSVKILDEEIQGLAD
FT                 TGAGVSIISSVDLIKKLGLPINKCNVKIKTADSTEYSCLGYVNVPFTYNSK
FT                 TRVIPTIIVPEVSKILILGVDFLEAFNFRLMIPQEHSQNDSEGVESVEECS
FT                 LFEIMWVENYFGDDDRTICFQIEPETEVVPIPTEMDESLDMPTIEVLKNPY
FT                 ENPADIDTEHQLSDVEKQELFEAVHKLPATTDGKLGRTHLLEHTIELLPGS
FT                 TPRKMATYRWSPVVEKVIDDEVDRMLRLGVIEECTGPVDFLNPILPVKKSN
FT                 GKWRICLDSRRLNSCTKRDDFPFPNMLGILQRIQRSTYFSVIDLSESYYQV
FT                 GLEKASTEKTAFRTNKGLYKFVVMPFGLTNAPATMARLMRKVLGSDLEPFV
FT                 YVYLDDIIITSRSFEHHCQLIRIVAQRLKQAGLTINIQKSKFCQRQIRYLG
FT                 YVLSEDGLSMDASKIQPIVDYAQPKTVKDIRRLLGLAGFYQKFIRNYSEIT
FT                 TPITNLLKKGRKQFIWTEEAEVAFRKLKEALISAPILANPDFDVPFIIETD
FT                 SSDIAIGAVLVQIQRGERRTIAYFSKKLSSTQRRYSATERECLAVLLSIEN
FT                 FKHFVEGSKFIIQTDAMSLTFLRTMSIESKSPRIARWALKLAKYDLTLQYK
FT                 KGTENIPADCLSRGVQALDVLGLDPYVDGLKSQIERFPDKFKDFKIVEGKV
FT                 YKFVTNSTTPEDPVFRWKYVVPLCERQKVVRDIHGEAHLGYFKTLCKVKER
FT                 FYWPRMSSFIKRFCHTCEVCRESKTPNLNVRPPCGKPKECSRPWEVISLDF
FT                 LGPYPRSKHGNVWVLVVSDFFSKFVLTQCMRNATAPAVCLFLETMVFTLFG
FT                 APSVLISDNAQVFKSSSFLKLLEKYQVTHWLLPVYHPAPNPTERVNRVIVT
FT                 AIRCALNKQLSHKNWDESIPNIAMAIRTSVHESTGFSPYFINFGRHMVSNG
FT                 SEYDHLRKLGPDKEPDPTKMSEEMKKLYEVVRLNLHRAYERYSRPYNLRSN
FT                 ARHQFNKGDMVYRKNMHLSDKSKDYVGKFGNKFSKARVKERIGTNTYVLED
FT                 LLGQRIPGTYHGSFLQKA"
XX
SQ   Sequence 7352 BP; 2196 A; 1453 C; 1616 G; 2087 T; 0 other;
     atttggcgcc caacgtgggg cccgaaaaac agttagtaga attttcaatt ggattttgtc        60
     cgaaaaactt ttaatagaat ttcaaattgg agttggttga agcacgattc atacttgatt       120
     gtgaatacta attgggtcta gtttaggttt aattttattg gtcttataag tttagtttgc       180
     attgagtttt ctttagttct tagtttaggt attggtgtcg gaatctaggt ttggtattgt       240
     gcttacagct ttccatttga tagttttatt ttcataagcc ttctagtata tctcgttaca       300
     ggaattctta agtttaattg gttattacat ctccttgaat ttcatttact ataatttcat       360
     ttgaattttc tctcgtacga atcggtagtg aattagaagc tagtgtgtat ttggtgtaga       420
     gtacgtgttt atttctgtca tacgtgagcg aactttgaat ttgaatttga acttaaaatg       480
     aattactatc atattaacga acagtgtcta gaagaagatg agattaacta cgagttacgt       540
     attcggggct attcgactga tggttcgttg gaaacccgac gtcgaacatt gcgtcgtttg       600
     ttgcgagaaa gcgaaggcat ggaggtgaag caaacttggt actccattga ggacgagtat       660
     gtgggcattc cgatgaagtt acagcaaatt gagctggcga ttaagaatcg agttggtgca       720
     ggctgtttgt cgcgattggt acatctgcac aaacgagttc gtcgatatag ggtcatcagt       780
     ttcgaccaac gagagaagca gaggatgcta ttgaacgcgg tgtctcagat ggccttgaac       840
     tacttcggtg tcaacctgga caatcttggg caggcagtac ctctgatgac tctcgttacc       900
     ggccctgagg agacgaacgt ggtttcttcg gtgcctgaaa gtcgggatga cttggctgag       960
     ggaaagagac ttggtgtctt tccaaagcag cagtcgttga atgaggatct gatcctattc      1020
     tcacccatgc cgatggacgg ttcgagagtg gatccgagac ggcacacgtt tccggtggcg      1080
     ggtccgcagg ctttcagggg tcaagcgatt caacctattt tagttccaca gccacaggcg      1140
     ttcgatccac aggttgaaga tgacgtggga ggtgattgtg aatcaccgca tttcaaaagt      1200
     tcgattcagg tgcagttgaa tcgtcgagat ccagctaagt cggccactcc gattccgaag      1260
     gatgagaatg cgtttgaagt caatcccttc gagcgaccaa acgttgtaac tgatatgggt      1320
     caagccagtc ttcgtcagaa tccgccgctt tccaacattt ctcccgtgtt gcaagactgc      1380
     ttttcggtgg atgggtcacg agatagttca tctttgagtc ctcaagaaca aactggaaag      1440
     aaaatatcgt taaatgagta tgtccatgtc tcggagatag aaacgtatat caaaagttgt      1500
     attagccaaa ttctgacgag tgatgtagtt gacaatttgg caggtcgatt gaaaaccgtt      1560
     ggtttgaagg aacaaaatgg gttagagatt ccgtacgctt ggtctggaag gccgagggaa      1620
     gcagaatctc ctataacaca ttccttcgct caacccaaac catcaatccc aatcaagaac      1680
     gtgcatggat ttccatcata tactggtcaa aaggttggga atccgtctac ggaatggaga      1740
     cctccaattc caaatgtctc ttcaagttct atggtacctc cgttgtatcc gacaactact      1800
     cctgagccgt ttccgaaccc ttatcgtcga aatgaccttc taaatcaaca agtacatcta      1860
     ccgccgaatt cctcgacttt tttaggaccg ctaggaacag gaaatccttt gagtaacaac      1920
     ttcgttccaa atcattattt acgtcagcgt ttaccgcatc agacgtgcaa tataattgaa      1980
     aaatggccga aattctccgg ggatagcaat gccgtgcccg tagtagattt tctgcggcag      2040
     atagagatcc ttagccggtc ttatcaagtg actcaagagg aattacgtat gcatgctcac      2100
     atgttgttca aaggggatgc atatgtatgg tttacggcgt acgatgacaa gttagattcg      2160
     tggcccacac tgaccgcgat gttgaaaatg cggtatgata atcccaacag ggatagagcg      2220
     attcgagaag atatgagaaa caggaagcag aaacccaacg aactttttag cgcctattta      2280
     accgacatcg aggccatgtc gcaaaggttg gttcgtaaaa tgtctgccga agaaaaattt      2340
     gatttggtag tggaaaatat gaagatgtcg tatagacgga gattagcttt acagccaata      2400
     cagtctcttg accatctagc tcaactgtgt tatcagtttg attcgttgga aaataacatg      2460
     tttcttacca aacccgcaat gaaacctgcg gtacttaatc aaatcttggc tgaagaggaa      2520
     cttgaagatt atgaggaagt atcagaggaa gaagatgcaa cagtgatggc tgttcgacct      2580
     aaaatgtctc gtaaggatgc aaataaaagc tcgggatccg gcataacctc agaaagtcaa      2640
     gaagctggcc aacctttatg ttggaattgc aaaaactttg gtcatatgtg gagagagtgt      2700
     agccaacgga aaactctttt ctgtcacatt tgtggtcaca ataatacaac ggcctatcaa      2760
     tgccctcaga aacataatct caaaccacgt gaaccggcag attcaaaaaa cgagtaaaaa      2820
     cggtagtttc ggggaaccaa attaccgaaa aagatcagga tagtgttccc atgtccaatt      2880
     ttaagtactt ttcgcaaaac tataacatta atacttgttt tcgtagatgt cctcatttat      2940
     cagtgaagat tcttgatgaa gaaattcaag gtttagccga tactggcgcc ggagtttcga      3000
     taatcagctc tgtagacctg attaagaaac tggggttacc cataaacaaa tgcaacgtta      3060
     aaatcaagac ggcagatagt accgaatatt cttgcctagg ttatgtgaac gtaccattca      3120
     catacaattc aaaaacccga gtaatcccta caatcattgt accagaagtt tcaaaaatac      3180
     ttattctcgg ggtcgacttt ttggaagcgt tcaattttcg tttaatgatc cctcaagaac      3240
     atagtcaaaa tgacagtgaa ggtgttgaat ctgttgaaga gtgttcttta tttgagatta      3300
     tgtgggtcga aaattatttt ggagacgacg accgtacaat ttgttttcaa attgaaccag      3360
     aaactgaagt tgtacctata cctacggaaa tggacgaaag tttggacatg ccgactattg      3420
     aagtcttgaa aaacccgtat gaaaatcccg cagatataga tactgaacat cagctttcag      3480
     acgtcgaaaa acaggaactg tttgaggcag ttcataagct tccagcaacc actgatggca      3540
     aattaggacg cactcatctt ttagaacata cgatagaact tcttcctgga agtacgccta      3600
     ggaaaatggc aacctacaga tggtcgccag tcgttgaaaa agtgattgac gacgaggttg      3660
     atcgtatgct acggcttggt gtaattgagg aatgcacagg acccgtagac ttcctgaatc      3720
     ctatactgcc cgtaaaaaaa tccaatggca aatggagaat atgccttgat tcacgtaggt      3780
     taaattcatg caccaaacgt gatgattttc ctttcccgaa tatgctcgga atactccaaa      3840
     ggattcagcg ttccacttat ttctctgtaa tagacctttc ggagtcttat taccaagttg      3900
     ggttagagaa agcctcgact gaaaaaacgg cctttcgcac aaacaaagga ttgtataaat      3960
     tcgtggtgat gccgttcggg ttaacaaacg ctccagcgac gatggcacgg ctcatgagga      4020
     aagttttggg aagtgatctt gaaccgttcg tgtatgtata tctggacgat atcattatta      4080
     cgtccagatc atttgagcat cactgtcaac tgattcggat agtcgctcag cgccttaaac      4140
     aagcaggact cactattaat atccagaaat cgaagttttg tcaacgacaa attcgatatc      4200
     taggatatgt tttgtctgag gatggacttt cgatggatgc gtccaaaatc caacccatcg      4260
     tagattatgc gcaaccaaaa acggtcaagg atataagacg cctcttaggg cttgctggtt      4320
     tctaccagaa attcattcga aattactccg aaataacaac accgatcact aacttgctga      4380
     aaaaaggacg caaacagttt atatggacgg aggaagccga agtggctttt cgaaagttaa      4440
     aagaagcctt aatatccgcg ccaattctgg ctaatcccga ttttgacgta ccctttatca      4500
     tcgagacgga tagttcagac atagcaattg gggccgtctt ggtacaaatt cagcgaggag      4560
     aacgacgaac gatagcctat ttttcaaaaa agctatcaag cactcagcgc cgttacagcg      4620
     caacggaacg agagtgcctg gctgtattac tgagcataga aaacttcaaa cattttgttg      4680
     aaggctcaaa gttcataata cagaccgacg cgatgagctt aacgttctta cgcacaatgt      4740
     ccattgaatc gaagtcccct cgtattgccc gatgggcatt aaaactcgct aagtatgacc      4800
     taacgttaca gtacaaaaaa ggtaccgaaa acatacccgc agattgtctt tcgcgaggtg      4860
     ttcaagcact agatgttctt ggattggatc cttatgtcga tggcctcaaa tctcaaattg      4920
     agcgatttcc agataaattc aaagacttca agatcgttga agggaaggta tacaagtttg      4980
     ttaccaatag tacgactcct gaagatccag tgtttcggtg gaaatatgtt gtgccattgt      5040
     gtgaacgtca aaaggtcgtt cgagatattc atggagaagc acatttggga tacttcaaaa      5100
     cactttgtaa agtcaaagaa cggttctact ggcctagaat gtccagcttt atcaagagat      5160
     tttgtcatac ctgtgaagtt tgtcgagagt caaaaacgcc aaacctgaat gtacgaccac      5220
     cgtgtggaaa gcctaaggaa tgttctcgac catgggaagt aatttcgcta gactttcttg      5280
     gtccttatcc aaggtcaaag catggaaatg tatgggtttt ggttgtgagc gatttcttct      5340
     caaagtttgt tcttactcag tgcatgagaa atgcaaccgc tcccgcagtt tgcttatttc      5400
     tcgaaactat ggtgtttacg ttgttcgggg caccctctgt actaatatcc gacaatgccc      5460
     aggtgttcaa gtctagctcc tttctcaagc ttcttgaaaa ataccaagtc actcattggc      5520
     ttctcccggt ataccaccca gctccgaacc caacagaacg cgtaaatcgc gtaattgtca      5580
     ccgcaattag atgtgctttg aataagcaac tctctcataa aaactgggat gagtctattc      5640
     cgaacatcgc aatggcaatt agaacgagtg tgcacgagag tactggattt agtccatact      5700
     tcattaattt tggtcggcac atggtgagca atggtagcga atatgatcac cttaggaaac      5760
     taggtccgga taaggagccc gaccctacca aaatgagcga ggaaatgaag aaactctacg      5820
     aggttgtccg acttaatctt catcgtgcat acgaacgata ctcacgtcca tacaacctcc      5880
     gttctaatgc gcgacatcag ttcaataaag gagatatggt ttatcgtaaa aatatgcacc      5940
     tgtccgataa gtctaaggac tacgtaggaa aattcggaaa caaattttcc aaagctcggg      6000
     taaaagaaag aatcgggacc aacacttacg ttttagaaga tttattaggg caacggatac      6060
     caggaacgta tcatggctct ttccttcaga aagcataagc cttacattat taaaatccag      6120
     ctatgactgc tctagtaccg gctagtgcat acaccaaaaa cgttcatcaa aatacgcttc      6180
     atagcggtgt tacggctcat cgtcacgtac tgagatgtcc ttttggtttc ctcgtacgtt      6240
     ggccactctt agctgacatg atcagcatga aagaatcagc tatgactatg ggacgtgggt      6300
     cccatataca caaagtgcct acagcagtag aaaatactct tcggaggtgt ttccagcagt      6360
     ataagcaggt aaaaatagat ctgctcgaag acacagctat gtacggtgct cgattcatgc      6420
     ccagaccaca ctcggaaaac actcattgag taatccttcg cagcgaaatg aaagttagtc      6480
     gagtgtctaa tcacagcctc gaaacgccta cgacctccta actttcagag tagcattgct      6540
     atccgtagaa gatatgttga atgtttgtgt cctcctaaaa tagtatatca acaattagtt      6600
     agttgttcgt ccactacgcg agagaatttg tcgtaccatt catatcatca aatcattcga      6660
     actagcttca ttctcaatcc ggttattttt ctcaattaaa gctttcaact acagcaccac      6720
     agtttattcc acttcaatcg cacagttaca atagtttccc aatagttttt tcgccttaat      6780
     ttccgtttta acttaaatat attgcaactc acttttaata atcgctacac ctctgacagt      6840
     tctctttgca ttagctgttt atgtatgtgt agggtcaaat cagtcggtta gagtgtaatg      6900
     gtttgaaacg ctatgttgac aggaatgagt aaaaatcggg cgcgtatggt tttgagtgat      6960
     taggttgagc agaatgagtg aaattggtag gataggtttt aaggtttagt tgtataaggc      7020
     aatttatatt ttcagacaat ttctgaagta acttaggatt atcggttatt aagtttccaa      7080
     acatttttgg agtaaattgg gacttctaag gaagttaatt tggtttagat gtaagcacaa      7140
     tttccaaaca tttttggagt aaaaatatcg gttattgtaa ataattttat ctaggaaaat      7200
     cggaatgagt cagttagaat gagtgagttg attagaaggg agtaggagat aagaatacaa      7260
     gaaagcaagt cttcatagtt gttgagagcc cgctgttcga atttgttgac ccatcaagtt      7320
     tcaataaata taacaaatgt gtttgtgcaa at                                    7352
//
ID   Gypsy-8_AA-LTR repbase;    DNA;    INV; 1583 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_AA_;
KW   Gypsy-8_AA-I; Gypsy-8_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1583
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 986-986 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1583 BP; 465 A; 305 C; 339 G; 474 T; 0 other;
     tgtaacctta aatatttatc cgtttccgtg atttatgttt tgtgtgtacc caaagctttt        60
     catagtgaca ataagccacc tatatctgaa gtcatcaacc tctctgaaat atttcgatat       120
     gagaagcttt agcaatatcg ggtttcgagc aatgtgctat tgatgcatac atttaggcga       180
     attcaccaaa ccattttgaa aaatgaaagg tgtgacgttt ttcaatacag gtgaatcccc       240
     attgcaatta aatgactaat ggaaaattac tgcctctctc tctacaaaac tgagtttaaa       300
     aagaacacaa aagcacaata gaagatagtt attgcgcctt ggattttgag ctcaagccaa       360
     ttcgactcgc gattaaacgc ccatttctgg tggagtgttc aagtcgttaa gacgtgtatt       420
     tttggaaaag cttagtgaac tacaagttga ttgtgaacaa tagttagact aaattcgaag       480
     taagtgcgcg atacagtgaa tttagtgagt tattaggaac gtttgaggaa gtttgaaatt       540
     tgagaaagtt tagtgaatac aaatcaggta agctggtgag ccaattgacc gaagccatgt       600
     gctaataatt atgaccgcgt tgaacaggcc tagcccatcc aacgtgggcg gtttatctgg       660
     gattcttcct agtttcccct agtgaagccg agaccggaac cagcgttcaa atagtcgagc       720
     atccgttttc ccgaatcaac cacgtgctcg acgacagtgg tgagtacggt gagccaagga       780
     actcgaactc gtagcgccaa gacgtgtggt agcgagctcc gcaaacccag ctcgaatctc       840
     caccaagcgt gaggacgcat tcacctcact attacccacg cacgagtagg cccatgtgac       900
     accgttagca aacgcctggt tcatcggatt ggatcctggc ttcgaactgc tcgacatcgt       960
     tcgacgtggg agcagcgccg cagcgaatat taaggtcaga cctttttaat taaatacgat      1020
     tgcgcaacgt atgaagaagt ttttgaaagc gaatatcgat agctcgaaat gtgacgtcac      1080
     acggtccgta gccagtttta tttgattcaa aatcccaata atttgaaaat tgaaatgaat      1140
     cgaaatacaa attgtaaagc tcattaaatt tactatttag aaacaatatt ttttcggtcc      1200
     gtagaatttt taataaagtt taataattac ttcgagtttg gtaatccact ctatcagacc      1260
     gtgttcgatt acaatttctt acgaatttgt tcgagctcta attcatcgta agactgtcgc      1320
     tgagtattgt agagagttta atagttcaac ataattttaa aaattccctc ctattattat      1380
     tattatttgt tttttagaat tttggtttgg ttaatttgcg tcgcgtcgtt tgggtcaaag      1440
     ttgttgataa gaagttccta ctgaactgtt tggcctgccc tgagcaggag ttctcatacc      1500
     gggttatgaa cagaggtaac ggtccttcaa tctgaaggtg gcgctaaagc cgttagcttg      1560
     gtggaacgga acggattgtt aca                                              1583
//
ID   Gypsy-8_ACe-LTR repbase;    DNA;    INV; 2027 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 19.03, Created)
DT   01-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-8_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-2027
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 740-740 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~81% identical to the consensus.
XX
SQ   Sequence 2027 BP; 592 A; 571 C; 341 G; 523 T; 0 other;
     tgttacgtcc tatagacgtc acgattcttt tctttcgaaa gaatcggctc cacgtcgcga        60
     ctatggttgg cgtctatgag actcgagtgg agtcctctga taacggtctg acagaactga       120
     aaagagggac cggacaagct ccgcgaaaac tcgtaaacgc caatcaaccc ggaaggaata       180
     acaatcttaa tgcagacccg aaaagtgaca agattgcaaa agacactata aatgcaccga       240
     agtcacgcaa tagtaaaaat ccaagctttg tcgtcccaga ctgaccaaca atttcttaag       300
     aaaacaggcg ccacgtcgcg cttaaaaaat cataaaacgc atgggataac ttcccacggt       360
     agcgttatct aagatcggac tcgcgactga caatggttgc cctgcacgca aaactagttg       420
     tgcacggtaa ccgtctgttt acctagccat attttccgcg aggataacag aattcgtcat       480
     ccatctggag caatcttgcc tctttaaaga aaaacgtaaa tcatttcttt tcttctcgaa       540
     acccctctaa cgatgcactt tagattaaca acgataggac gctataaaaa tcgtaaatct       600
     cgcgtgacat tgcaactaac tattgcatct aaacaaaggg cactacgtcc ttttttcggg       660
     atataaatag aggtctcgcg gaagcgcaga gcgtcagtct acctcagttc acgtcgaaaa       720
     tcagactacc tcagtcagtg aaaaccgcac tccgcgactc cagagttcac gccagttcgc       780
     gtatttttac agtgcatcaa aattgtgggc aacaatcatt attgggatca cccaataagt       840
     cactggccac tgcgactgcc ctcctggcgc tcttccgtgg gcctcctcgt tcttcaatat       900
     acatctaccc gagatctcgt ggaccaagca gctaaacagt aagtcggcct gccattcctt       960
     ccagtttatc cacacatctc ccccgtaaaa acaaacatac acacacacac gcatatatac      1020
     atatacatat atatatttta cccttcgatt atagtgcgcg ctcgtacatc tattaaaaaa      1080
     cggggacgaa tcccttatgt cagaaggagt aggcggagcc gtccacatag tcacaagcgt      1140
     gccgccacaa ccgaccgacg acagctactc gagatctcgt actcgccagt ctccgatcaa      1200
     tcaccactag acctcaatta tccctctctc atcgaccccg ctatccagga gatcctaact      1260
     attcccctcc tcctctcgaa gagcgattcc ctctccctct cctctcgaag gattccctct      1320
     ccttcttcgg ctttttagat tgtattcttc cccctccaat gaaggggata gaatagttac      1380
     gtctacattc tggaaacccc acttcttaca ccgtcctata taaacacctc atcccgatgt      1440
     gctcctgcac caccttcctc gcctccaata cccaataacc ttatttcctc ttctcacaca      1500
     cacacacaca cacacacaca cacacacacg cacacacaca cacaccacac ctccataact      1560
     aaactcatta actcagccat attaaaaaaa tagattgtaa ttacacgaat aatgaaaatt      1620
     ttttttatat ttatataaat atatgtataa taatttatat aaacttaaat ttttttttta      1680
     ataaatgtaa atcgtttata ttataaatga agattccccg tttatttaaa tcaccactcg      1740
     cattcctttc cctctaatac ctgagatcgc acgaggtcca gtcccgggtc aaaaggatta      1800
     agttccttga tccaaaaagt aggaccgacg ttcgcactgt ccatcggaac aggtgtcata      1860
     gcgtcccttc gggacgttga cccatattcc gggaccgaaa aggtgcgact cacaggtgtt      1920
     cgcctctgcg cgtatacctg tgagattgag tctagccgtc cttccatacc ctctccattc      1980
     tccctcattg tctcctcgac caaacttcca agagtttgga cgtaaca                    2027
//
ID   Gypsy-8_AnFu-I repbase;    DNA;    INV; 5199 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-5199
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2894-2894 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1184..2074
FT                 /product="Gypsy-8_AnFu-I_1p"
FT                 /translation="MSKNESDDKNVGPSAIPVQXTAPSPVARTIEPENSHL
FT                 VIEKISTKLPSFWEDAPTAWFVAAEAEFDVSNVTRERSKYSHVLSVLPKNV
FT                 LPKIMDIITTPLPTNPYSYLKSQLLERLNVSEEQRITQLLYHVQMGDRSPS
FT                 DFYRHMVQLAGDSANLTSELIRKLWLSRLPKTIEVALIAVGSREINELIKI
FT                 ADRLWEATQAGAVSSIVGVSSSESSGRNPSNETTMLRQEISELRNTLRRLS
FT                 LRTGNNRGRQRDRSQSRNRGRTPSQVRKHPMCYFHFRFGEEARKCQKPCNF
FT                 MQQKN"
FT   CDS           2026..5121
FT                 /product="Gypsy-8_AnFu-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RSTKVPKTVQLYAAKKLICSTVPGNPRATLGSYRLFI
FT                 DDEETKFTFLVDTGADVSVLPFNLFGIVNKQTENLLVAANGSPIATYGTKM
FT                 LQVSLGLRRVFMHCFILAEVNRPIIGADFLAKHDLWVDLKRKRLIDHFTGQ
FT                 ETIATIALVDTPTPKNWMIESSEFGDIFKQYPTLRDPPDYKKPVRHSIVHH
FT                 IETKGSLPFAKPRRLDPKKLKIAKAEFQHMLDLGICRVSSSPTSSPLHMVP
FT                 KPDSDWRPCGDYRRLNAITIPDRYPIPHVQDFTMNLDGCKFFSKLDIIRAY
FT                 HIIPVAEEDIHKTAITTPFGLFEFLRMPFGLRNASQCFQRLMNNIFHDLDF
FT                 VFVYIDDILIASSSRESHLEHLHIVLKRLTDHDIKLKPSKCVLGVNEIEFL
FT                 SHTISAKGIRPSSEKILAIQNFPSPCTVKQLQRVLGMVNYYHRFIPNISDK
FT                 LRVLHQSVKDHSKNKKAKFEWSDASEQALNLIKKELSNATMLVHPKSDATY
FT                 TLTTDASNVAVGAVLQQISEGILEPLAFFSKTMTPTEQRYSTFDRELLAIT
FT                 LGIKHFRHFLEGRSFTVYTDHKPLIHALTSKTEKSPRQCRQLDFISQFTTD
FT                 IKYITGESNVVADALSRIGETNGITDLTYESIAKQQQEDEQLQKLLQGSEA
FT                 NSKFKLNKLILDKNTLIFESSTGQNRLYVPQSLRRCTFDSLHNLSHPGIRA
FT                 SRKLVSERFFWPSMNKDVGNWTRACIGCQKAKICRHTRSPLEELPIPKGRF
FT                 EHVHMDIVGPLPPSEEKSYLLTIVDRFTRWPECYPMSDISAKTLAETFVRN
FT                 YIPRFGCPSTITTDRGRQFQSRLFEELTRLLGTHHIKTTAYHPQANGMVER
FT                 FHRHLKGALKACEDTAHWISRLPLILLGIRVAYRDSLRGSPAEMVYGESLR
FT                 LPAEVFIPSAAKSVEDVPEFVQDVKKALRYIEPNPPKPKHTTTVYLPKTLQ
FT                 TCKHVFVRVDKVKTGLQAPYEGPYEVVRRCRKFFTVKIKDKNESISIDRLK
FT                 PAFEMEGVSKTGKTTNNRKCVHFAHN"
XX
SQ   Sequence 5199 BP; 1661 A; 1145 C; 1066 G; 1321 T; 6 other;
     aattggtgac cccgacgtga tctgaagcgc gcggtgaaaa gtgtcgcgat tggtgcaatc        60
     aagtgctaag tgcttcgctg gtgaatagaa gattcgacaa cagccgttgc caacgcacat       120
     cactatccaa cctttctggc ggatcgcatc ccatcatatt atcgcgctac agccatagga       180
     ctggaacaaa cacacacgca tttgtgtaac gagacattaa ggagagcgca gcgcgttaca       240
     gattagacgg tgcacaatca ttattgagaa tcccgtaaac gccacgcatc gtgtaaatgt       300
     catcgtgaaa cccgcattcc caaccatgcg gtagtccata tttgagtgtc gcaaagcaaa       360
     tttcgcacgg gtwatttttc gttgaggaag tcstacgaag cgggaagaag ccagccctcc       420
     gaaaaccaac gaatgacaca cgttacaacg ccggagctac atcgtaatag ttttttcggt       480
     gtgaaggaca agacggagga agcatcgtga tctgccaaat taagcacaac gtggagcagc       540
     catcgcgatc tcctatatga cgaacaacgt ggagcagcca tcgcgatctc ctatatgacg       600
     aacaacgtgg agcagccatc gcgatctcct atatgacgaa caacgtggag cagccatagc       660
     gatcacctat atgacaaacc acgtgggcca gccatcgtgg acgacgtgta aaatccttca       720
     tcggagcagc catcgtggat gacgtcttga gtttctttkt gttggtgcag catcatctgc       780
     attgcatggt ctacgacgcc gcagccgcca tcgataacaa cgggctgaga acctcgtggw       840
     aaccaccgga tgctcccgca atacgccaca acatcggtga gctcgttcct ttattttctt       900
     actatcacgt atttttctcg attwttataa ttttataaca ttcccgaaat cataagatgt       960
     tttctcaccc gcgttaaatt ttatctgcct atctttatac atttacatat acatgcataa      1020
     ttgttacggt atactttgtg cacattacaa tcaatttcat tatacgattt tttttttaat      1080
     tttttttgta tattaaaata acaattcagt agtgcaaaca aaatagagaa aattaggtac      1140
     aaacattttt tttattagat agggaatatt tgtaaaccca aaaatgtcaa agaacgaaag      1200
     tgatgataaa aatgttggtc ctagtgcaat tccagtgcaa sccacggcgc cgtcaccggt      1260
     ggcgagaacg atagaaccgg aaaattctca tttggttatt gaaaaaattt ctacaaagct      1320
     gccaagtttt tgggaagacg ctccaaccgc atggtttgtg gcagcggaag ctgagttcga      1380
     cgtttcaaac gttacaaggg aacgctcgaa atattcacat gttctaagcg tgctcccgaa      1440
     aaacgtcttg ccaaaaataa tggacataat aactacgcca ttaccaacca acccgtactc      1500
     atatttaaaa agccaactgc tagaaaggct caatgtgagc gaagaacagc ggatcactca      1560
     gctgttgtat catgtacaaa tgggtgatcg tagtccgtct gatttctata gacacatggt      1620
     tcagttggcc ggcgattctg caaacctcac ttccgagctt attcgcaagc tttggttatc      1680
     aaggttgcca aaaactatcg aagtagcact cattgccgtc ggaagccgag aaatcaatga      1740
     gctgattaaa atcgcagaca ggctatggga agcaacccaa gccggagcgg tatcatcaat      1800
     cgtaggcgtt tcttctagtg aaagctcggg aagaaatccc tcgaatgaaa ctacgatgtt      1860
     aagacaggaa atttctgaac tacgtaacac actaaggaga ctttccctaa gaacaggaaa      1920
     taatagagga cgacagcgag acagatctca gagtcgaaac cgtggtagga ctccatcaca      1980
     ggttcgaaag caccctatgt gctattttca ttttcgtttt ggtgaagaag cacgaaagtg      2040
     ccaaaaaccg tgcaacttta tgcagcaaaa aaactaattt gctcaacggt gccgggcaac      2100
     ccgagagcaa cattaggctc ctatcgtctt ttcattgacg atgaggaaac caaattcact      2160
     ttccttgtgg atacaggagc cgacgtgtcc gtcttaccgt tcaatctgtt tggcatagta      2220
     aataaacaaa cggaaaattt actagtagca gctaatggta gccctattgc tacctatgga      2280
     accaagatgc tacaagtaag tcttggcctc agaagagtgt ttatgcactg ttttatactg      2340
     gctgaagtaa accgaccaat tataggggct gattttttgg cgaaacacga tttgtgggtc      2400
     gatttaaaaa gaaaaaggtt gatcgatcat tttacaggtc aagaaacgat cgcaaccatc      2460
     gctttggtgg atacaccaac acctaaaaac tggatgatcg aatcaagcga atttggagat      2520
     atttttaaac aatatccaac cttaagagat ccaccagatt acaaaaaacc agttaggcac      2580
     tcgatagtac atcatatcga aaccaaagga agcttgccat ttgcaaaacc ccgccgtctg      2640
     gatccgaaga agctcaagat tgccaaagca gaatttcaac atatgttaga tctaggaatc      2700
     tgcagagtat cctcatcgcc aacttcgtca ccgctacaca tggtacccaa acctgattca      2760
     gattggagac cttgtggcga ttataggcgt ttaaatgcca tcacaatacc tgatcgttat      2820
     ccgatccctc acgtgcagga ttttacgatg aacttggatg gttgcaaatt cttttctaag      2880
     ttggatatta tacgggcgta tcacatcata cccgttgccg aggaagacat ccataaaacg      2940
     gcgataacca cgccattcgg attatttgag tttctgagga tgcctttcgg acttagaaat      3000
     gcaagccaat gttttcaacg tctcatgaat aatatttttc atgatttaga tttcgtattt      3060
     gtatacatag atgacatcct aatagctagt tcatcgcgtg aatcccattt agaacacttg      3120
     catattgttc taaaacgttt aacggatcat gatataaaac taaagccatc aaaatgcgtt      3180
     cttggtgtga atgaaataga attccttagc cacactattt ccgcgaaagg gataagacca      3240
     tcgtcggaaa aaatactggc aattcaaaat tttccatcac catgcacggt gaaacagctt      3300
     caaagggttt tgggaatggt gaattattat caccgtttca ttcccaacat ctccgataag      3360
     ctaagagtcc tgcaccaatc agtaaaagac catagcaaaa ataaaaaagc caaatttgaa      3420
     tggtccgatg cgagtgagca agcactaaac ctaataaaga aggaactttc aaacgccacc      3480
     atgctcgtgc atccgaaaag tgatgccacg tacacactaa caacagacgc ttcaaatgtc      3540
     gctgtagggg cagtgttaca acaaattagt gaaggcattt tggaacctct tgcgtttttt      3600
     tctaaaacaa tgacgcccac ggaacagagg tattccacat tcgatagaga attacttgct      3660
     atcactcttg gaataaagca tttccggcac ttcttagaag gtagatcgtt cacggtttat      3720
     acagatcaca aaccattgat ccatgcccta acttcaaaaa cggaaaaatc tccaagacaa      3780
     tgccgacaac tagactttat ttcacaattt acaacagata taaaatacat cactggcgag      3840
     agcaacgtag tggcggatgc cttatcccga ataggagaaa caaatggaat tacagacctc      3900
     acttatgaat caatagcaaa acaacaacag gaagacgaac agctacaaaa gctattacaa      3960
     ggctccgagg caaactccaa attcaaatta aataaattaa tattagataa aaacacactg      4020
     atattcgagt catcaaccgg acagaatagg ttgtatgttc cccaatctct aaggagatgt      4080
     acttttgaca gcctgcacaa cctatcgcat ccgggcattc gtgcctcacg caaattggta      4140
     tccgaaagat tcttctggcc gtccatgaac aaggacgtgg gaaattggac tcgtgcatgc      4200
     attggatgcc aaaaagccaa aatttgtcga catactcgct cgcctttaga agaattacca      4260
     attccaaaag gaaggtttga acacgtgcac atggacatcg ttggtccatt gccaccatcc      4320
     gaagagaaga gctacttact gacaattgtg gaccgtttta ctcgttggcc ggaatgctac      4380
     ccgatgtctg atatttcagc taaaacacta gctgaaacat tcgtcaggaa ctatattccg      4440
     cggtttggtt gtccatctac gataacaacg gatagaggta gacaatttca gtccagactt      4500
     tttgaagagc taacaaggtt gcttggaaca catcacataa agacgactgc ttatcaccct      4560
     caagccaatg gaatggttga aaggttccat cgacatctaa aaggagcgtt aaaagcctgt      4620
     gaagacactg cgcattggat ttctcgattg ccgttgatac tgttgggcat tcgagtggct      4680
     tacagagatt cattaagagg ctcgccagca gagatggtat acggagaaag tttgcgactt      4740
     cctgccgaag tattcatacc atctgctgca aaatccgttg aggacgtacc tgaatttgtt      4800
     caggatgtaa aaaaagcatt aaggtacatc gaaccgaatc caccaaaacc caaacacaca      4860
     actacggttt atttaccaaa aaccctgcaa acctgtaaac atgttttcgt acgggtagat      4920
     aaagtaaaaa cgggtttaca agcaccgtat gaaggacctt acgaggtagt gcggcggtgc      4980
     agaaaatttt tcacggtcaa aattaaagac aagaatgaat caatttcgat tgatcgactc      5040
     aaacctgctt tcgagatgga aggtgtttcc aaaacaggca aaaccacaaa taaccgaaaa      5100
     tgtgttcact ttgcacataa ctaaaagaaa tttcaaatta agagataaac aatctcacag      5160
     ttccttttct atcgtaactc cgtcactggg ggggagtcc                             5199
//
ID   Gypsy-8_AnFu-LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-347
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2960-2960 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 347 BP; 114 A; 63 C; 87 G; 83 T; 0 other;
     tgtggtgttc gcctgtacaa agtaattaca atctttgccc atcacttgag gtccgcgata        60
     ttaagggtta actagaatac agtgagacag taaacgatta acgggagagt cgggtaggac       120
     acgattagcg cgagaaatgc gtaggtgcat tagaaaggat aggtgcgtga gcggaagctt       180
     accaaagagc gagaatacga tagggagatc gtgatagata taaattaggt gtccgatcgt       240
     acaagccctc tctcggtttc agtccctacg tgtgcgaaca accaatctac tgtgacttaa       300
     ttaaaagttc aaataagaaa cgtgcaaata aattgtagaa ccctaca                     347
//
ID   Gypsy-8_AnMe-I repbase;    DNA;    INV; 5971 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5971
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6820-6820 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1417..2289
FT                 /product="Gypsy-8_AnMe-I_1p"
FT                 /translation="MDNFDIKTATALVHTYDGNPDGLDNFVDSANLLNELF
FT                 PKNTLMLVKFLKTRLTGKARLGLSPNIDNFESLINDVRSRCQEKLNPDRII
FT                 YQLKAIRHGDTKTLCDEVELLSTKLKNVYLQQEIPEQVAKEMALKQGVNTL
FT                 IEKVKNQETRILLKAGKFSCISDAFEKVLENEKNNNDMQILSFGRNYYYTP
FT                 HINSNRRFFRSKFPHNTNSRYMQNTHNRGFGNRLTYNNNQPDNNRFQNKKY
FT                 FHNSQRRMPASNTNFNRLYTAQAEEQEHFLGDPDTLEETLQSTENYQHSQ"
FT   CDS           2211..5591
FT                 /product="Gypsy-8_AnMe-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RTGAFFRGSRYTGRNSPEYGKLSTFAINFHASNFIKV
FT                 QIDMATNKTSILILDTGADVSLFKVDKIKLKQQVYKQNKINLTGITNNSIN
FT                 TLAATFTNISFGNVSVNHKFHIIPKDIDIKADGILGRDFLTKHKCVIDYDH
FT                 WLLNFNYEGITICHPIEDSIDDGFILPLRSEVVRRVKLNKLTEDSIVLANE
FT                 IKPGIFCGNSLVSIDKQYVKFINTTDNNVFIANNSFKPLVDPVKNYTTKNK
FT                 ISKNSLKRQSKINEILKQIEYKNIPNYIISDLEKILIEYSDVFCTDDEQIT
FT                 TNNFYEQSIELKDNVPCYIPNYKQIYSQSNEIKNQVDKLLKNDIIEHSVSP
FT                 YNSPILLVPKKSEDTSKKWRLVVDFRQLNKKIMPDKFPLPRIDTILDQLGR
FT                 AKYFSTLDLMSGFHQIPLHKESRKYTAFSTSSGHYQFKRLPFGLNISPNSF
FT                 QRMITIAMAGLTPESAFVYIDDIIITGCTIKHHLENLRKVFDRLRCYNLKL
FT                 NPSKCKFFQSSVTYLGHKITDKGIYPDESKFDTIKNYPLPKNADDVRRFVA
FT                 FCNYYRKFIRSFAEIAKPLNNLLKKGSMFCWSKECQYAFDTLRRNLASPNI
FT                 LQYPDFEKEFIITTDASDVACGAILSQIKDNYDLPIAFASKSFTKGEKSKP
FT                 TIEKELTAIHWAVNHFKPYIFGRKFKIRTDHRPLVYLFNMKNPTSKLTRMR
FT                 LDLEEFDFEVEFVQGKSNTGADALSRIVIDSQQLKDMQGKNMEVLKNKSLL
FT                 MVNTRAMTKQNTLKIPQKAIEEEEENRSVTEPTFWQTENPSEVNKLLKIQS
FT                 VKQFNTIKFVVFNNNLNKELGSTSIKCNVNGSQALESALLQVCKIVKEYKR
FT                 NRVAISVQDSLFKQYSIQTVKEIADKAISGFEIIAYTPPKWVTEQEEIHNI
FT                 LKNYHMLPSGGHVGQYRLYLKIREKFKWRNMKEEIKDFVQGCEKCKQNKIM
FT                 RHTKEESVITTTPMKPFEVVCIDTVGPLPKTQKNYRYIVTMQCELTKYIVL
FT                 APTQNKEANSIARAMVDNFILKYGKFLEMKSDQGLEYNNEILKKIAEILEV
FT                 KQTFATAYHPQTIGSLERNHRTLNEYLRAFTNEHGDDWDDWVKFYEFSYNT
FT                 TPHTDTNYTPYELVFGKKS"
XX
SQ   Sequence 5971 BP; 2339 A; 950 C; 1099 G; 1583 T; 0 other;
     tggcgaccgt gacagtgtgc agaaagtgat aatttagtaa tgcacgattt taataacgag        60
     aaacgatttt aataacgcga ggttactgaa cctacgtaag tgcgtaagaa tgtgtcgcgt       120
     aagtgcgtaa gtgtgcaata tcgggaactg catagaatct acgacatata tagtgacgtt       180
     acgctagact atatatattg gaaactgtct taaaatgaat ggcatgtgaa gtacagtttc       240
     cataaaatcc gataagctat accgtaaatt aataatagtt aacggtatcg tgcgtagccg       300
     gattagtgca gtgacctatc gaaaaactat cgacgtgtga acacgaaaaa aaaaaaaaga       360
     gagaaagaag tacgagtgag agaattggga gtaaaagtgg atcgagagag agagacatat       420
     catcaaatag tctcagttca acgtgtgaga agcggaagag acggtaaggt gagcgaaaga       480
     gcgaatcgac cgataacggc tgtacaagcg agaaggaaag gctgaaccgt gctgtgtgat       540
     gtgatgaaat tgtagctccg tgagattatt cagttcgtcc aaattagtgc gagtgaaaga       600
     gaacgctaat taagaaggag agcgagagtg agaaaaccaa cacagtcgtg acgacgggag       660
     atcatccaga tcgttttaac gtgacaaaga taaactatac accgttgtaa ttcggtagaa       720
     cgagtacgaa gctcagcaag agaatcggag cttacagtga atgtgtttat acggcgaaga       780
     ggtgacgtga cgaagcgtcg aagcgacgta gcgacgaagc gacgaagcaa cgaagtggtg       840
     aagcgatgga tggcgagcgg aaagcagacg tattaatata tcgggcagcg gcgtaaggac       900
     taagcgtaag ttaggaaata gaacaaggta ggcaatagaa tagagaaatt tataaatgat       960
     attattgtaa ttgctcaatt aaatatacgt ttatttaatt tcgtgcactg gttgctcaca      1020
     atattacaaa aaaaaaaaaa aaaaaaaaac atccttcctt tacattaccc aacttcccac      1080
     ttttcaatgc tatcaaaaat aaacgagaat gttctaagat taaaaaaaaa ttgaaaaaca      1140
     ttatctggtg atagaaagtt tcgcggatgt ctgcttgaac actatagtgc ctctgcaaac      1200
     cgcctatttg aaaaaactaa ggcctatctg aatagttatc aagaaataga accattaaca      1260
     aacaacattg aactcaaaca aattttaaaa gagatcattg aaatttttgg taacattcaa      1320
     acccacataa actatcatca atcaaaccgt attcggatta aatttaaaac cttagccaaa      1380
     ctcgttgtcg tgttcggtcg ttggagtgaa agcaaaatgg acaattttga catcaaaaca      1440
     gctactgcac tggtacacac atatgatggc aacccagatg ggttagacaa ttttgtagat      1500
     tccgccaact tattaaatga gctttttcca aaaaatacac taatgttggt taaattttta      1560
     aagaccagat taacaggaaa ggcacgatta ggtttatcgc ctaacattga taattttgag      1620
     tcattaataa atgatgttag gtccaggtgt caagaaaaac taaaccccga cagaattata      1680
     tatcaattaa aagcgattcg tcatggagac actaaaactc tttgtgatga agttgaacta      1740
     ctcagcacta aacttaaaaa cgtttattta caacaggaaa tacccgagca ggtagcaaaa      1800
     gaaatggcgt taaaacaagg tgttaacact cttattgaaa aagtaaaaaa tcaggaaaca      1860
     agaatccttt taaaagcggg taaattttct tgtatttctg atgcttttga aaaggtgtta      1920
     gaaaatgaaa aaaataataa tgatatgcaa atattatcct tcggaagaaa ttactattac      1980
     acaccacaca taaatagtaa ccgaagattt ttccgcagca aatttcccca taacacaaac      2040
     agtagatata tgcaaaatac acataataga gggtttggca atcgtttaac gtacaataac      2100
     aatcaacccg ataacaatcg atttcaaaat aaaaaatatt ttcataacag tcaaaggcga      2160
     atgccagcgt caaacacaaa ttttaatagg ctatacacag cgcaagctga agaacaggag      2220
     cattttttag gggatccaga tacactggaa gaaactctcc agagtacgga aaactatcaa      2280
     cattcgcaat aaatttccat gctagtaatt tcataaaagt tcaaatagac atggctacta      2340
     ataaaacaag tatactgatt ttagatactg gagcagatgt gtcattattc aaagtggata      2400
     aaataaagtt aaaacaacaa gtttataaac aaaataaaat aaatctaaca ggtattacta      2460
     ataattctat aaatacatta gcagccacgt ttactaatat atcatttggc aacgtgtctg      2520
     ttaatcataa atttcatatc atacctaaag atatagatat aaaggcagac ggtattttgg      2580
     gaagagattt tctcacaaaa cataaatgcg taatcgatta tgatcactgg cttttaaact      2640
     tcaactatga gggcataaca atatgtcatc caatcgaaga tagtatcgat gatggtttta      2700
     tactgccgtt acgtagtgaa gtagtacgaa gagtaaaatt aaataagtta accgaagatt      2760
     caatcgttct tgcaaatgaa attaaaccag gaattttttg cggcaactcc ttggtatcaa      2820
     tcgataaaca gtatgtaaag ttcataaata ctactgataa taatgtgttc atcgccaata      2880
     attcattcaa acctctggtt gatccagtta agaactatac aactaaaaat aaaatatcca      2940
     aaaatagttt aaaacgccag tctaaaataa acgaaattct caaacaaata gagtataaaa      3000
     atattccaaa ttatataatt tcagatttag aaaaaattct cattgaatat agtgatgtat      3060
     tttgcactga tgatgagcaa ataactacta acaattttta cgagcaatca atagagttga      3120
     aagataatgt accatgttat attccaaatt ataaacaaat ttattctcaa agtaatgaaa      3180
     taaaaaatca ggtagataag ctgctcaaaa atgatataat agaacattcg gtctcaccat      3240
     ataattcgcc tatcctcttg gttccaaaaa aatccgaaga taccagcaaa aaatggaggt      3300
     tagttgttga tttcagacaa ctaaataaaa aaattatgcc tgataaattc cctttgccta      3360
     gaatcgatac tattttggac caattaggta gagcaaaata tttcagcacc ttagacctga      3420
     tgtccgggtt tcatcaaatc cctttgcaca aagaatcaag aaaatataca gctttttcaa      3480
     catcatcagg gcactatcaa tttaaaagat taccttttgg gttgaatata agccctaata      3540
     gctttcagcg tatgataacc atagcaatgg caggattgac cccagagagt gctttcgtct      3600
     atattgatga tatcataata acaggttgta caataaaaca tcaccttgaa aatttaagaa      3660
     aagtttttga tagactacgt tgttacaatt tgaagctgaa tccatcaaaa tgcaaattct      3720
     tccagagtag tgtaacttac ttagggcaca agatcacgga taaaggtata tatcctgatg      3780
     aatctaagtt tgataccatt aaaaattatc ctttacccaa aaatgccgat gatgttagaa      3840
     gatttgttgc cttttgcaac tactatcgta agtttattcg tagttttgca gaaatagcaa      3900
     aaccactaaa taatttatta aagaaagggt caatgttctg ctggtcgaaa gaatgtcagt      3960
     acgcgttcga tactcttaga aggaatttag catcaccaaa tatattacag tatccagatt      4020
     ttgagaaaga gtttattatc acaacagatg catcggatgt tgcatgtggc gcaattctat      4080
     cccagataaa agataattat gatttaccaa ttgcatttgc aagtaaaagt tttacaaaag      4140
     gggaaaaatc caaaccaacg atagaaaaag aactgacagc tattcattgg gcagtaaacc      4200
     attttaaacc atacattttt gggagaaagt ttaaaatccg aacagatcac agacctttgg      4260
     tttacctatt taatatgaaa aatcccacgt caaaattaac acgtatgagg ctggatcttg      4320
     aggaatttga cttcgaagta gaatttgttc aaggtaaatc aaacacaggg gcggacgcac      4380
     tatcaagaat cgtcattgat tcacaacaac ttaaagacat gcaaggaaaa aacatggagg      4440
     tgctaaaaaa taaatctctg ttgatggtaa acactagagc aatgactaaa caaaacacat      4500
     taaagatccc acagaaagct attgaagaag aagaagaaaa taggtccgta acagaaccta      4560
     ctttttggca aactgaaaat ccttcagaag taaataaact cttaaagatt cagtcggtaa      4620
     agcaatttaa cacaattaaa tttgtagtat tcaataataa tcttaataag gaattgggaa      4680
     gcacatctat aaaatgcaac gtaaatggaa gtcaggcact cgagtctgct cttctacagg      4740
     tatgcaaaat tgtgaaagaa tataaacgaa acagggtagc gatttctgta caagattcat      4800
     tatttaagca atactcgata caaaccgtaa aggaaatcgc ggataaagcc atttccggtt      4860
     tcgaaatcat tgcatacact ccgccgaaat gggttacaga gcaggaagaa atacataata      4920
     ttttgaaaaa ttatcacatg ttaccttcgg gaggacatgt tggtcaatac cgattgtatt      4980
     taaaaatacg agaaaaattt aaatggagaa atatgaaaga agaaattaag gattttgtac      5040
     agggatgcga aaaatgtaaa caaaataaaa taatgagaca cacaaaagaa gagagcgtaa      5100
     ttacgactac gcccatgaaa ccatttgaag tggtatgcat agacacagtg ggccctttac      5160
     caaaaacaca aaaaaactat aggtacattg taacgatgca gtgcgagtta acaaagtaca      5220
     ttgttctcgc tccaacacag aataaagaag cgaactcaat tgcaagggct atggtagaca      5280
     attttattct gaaatacgga aaatttcttg agatgaagtc cgaccaaggc cttgaatata      5340
     ataacgaaat tttaaagaaa atagcagaga tactcgaggt caagcagact tttgcaaccg      5400
     catatcatcc acaaacaata ggctctttgg aaagaaatca tagaacatta aatgaatatc      5460
     taagagcatt tacgaatgag catggtgatg actgggatga ttgggtaaag ttttatgaat      5520
     tcagttacaa cacaacacct cacacagata caaattatac tccgtatgaa ttggtatttg      5580
     gaaaaaaaag ctaaccttcc acaggattta cggagtagta atattgaacc agtgtacaat      5640
     tatgatgcat attataacga aatgaaatac aaattgaaaa agtcaaatga aatagcacgt      5700
     aaaaatttaa ttgagcaaaa attaaaaagg caggatagtg caaatgtcaa tgtgaaaccg      5760
     ttagatgtaa agcaaggaga cgcggtttat ttaaaaaacg agaataggaa aaagttagac      5820
     ccagtataca taggcccata tacagtagta agctttgata catctaattg tacaattatg      5880
     aacaaggcta caaataaatt gagcacggta cataaaaata gattgattaa gggatgaaaa      5940
     gcatacgctt ttcatttttg aaggggtgag g                                     5971
//
ID   Gypsy-8_AnMe-LTR repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 26.12, Created)
DT   11-JUN-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-435
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6811-6811 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 435 BP; 177 A; 47 C; 98 G; 113 T; 0 other;
     tgtagcgccc gatagttagg caattagtat aatactagga ataatcaatt atagtaagca        60
     attatggtag cgatcgttta tggtatggaa ggataggata ggaaggatag gaataattat       120
     agcaagtaaa ttacataaaa atgcattagc tagataagga cagaatatag ggcatatgat       180
     agaacaggat agggagataa gctaatagcc acataagata tgtttaagat aaatactttt       240
     agccaataga aaaacgtagg gtaaattttg gcgcgaaaag gagtagtata aataagagtt       300
     aggaatagga attaggtcat taaggaaact gtatactaag aggaaacgct gcccaaaaat       360
     acaaagacta aaaagtattt ctaaatcggt gtagttattt cgagttggat gtaaagaaac       420
     cttttgtcca ccaca                                                        435
//
ID   Gypsy-8_AnSt-I repbase;    DNA;    INV; 4072 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4072
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 793-793 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..942
FT                 /product="Gypsy-8_AnSt-I_1p"
FT                 /translation="MLEDKVITNPPTANPASQPAAIEAIHTPRLNPPSMED
FT                 TNIETYFMSLEFWFAASGIGALHDTRKYNIVMAQVPPNKLTELRSIIDGTP
FT                 TMDKYTYIKTKLIGYFADSQQRRLQRVLSDMPLGDKKPSQLLNEMKRVAGN
FT                 ALNETVLIDLWASRLPPHAQAAVIASRGDAADKTTIADAIVESLELRSINA
FT                 VERKKSAMAPDHVPETAVNDPISDLRKEIAELSRRIENVFPNRRHRGRSVS
FT                 RASSPGRRSFSRRDFSTGPCWFHRKFGSEARKCRKPCTAQSSSPSQ"
FT   CDS           946..4041
FT                 /product="Gypsy-8_AnSt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RRSADAAVEIGELTTTAAIFRLRIADTTTSMQFLIDT
FT                 GADVSVVPKDLLSAGVKPSSIKLFAANGSPINVYGEVLLKVNLGLRREFLW
FT                 SFLIADVTSGIIGADFLGNFDLLVDIKRKRLIDNTTHLESVGFLAKSEQCS
FT                 VKTFQAVSPYAELLAEFPNITRLAPPGTICDAPVYHRIETTGQPVYARPRR
FT                 LSPDKLEAARSEFEHLMKLGICRPSSSSWASPLHMVKKADGSWRPCGDYRA
FT                 LNAQTIPDRYPLPYLQDFSTILEGKTIFSKVDLQKAFHQVRIHPEDIAKTA
FT                 ITTPFGLFEFSFMTFGLRNAAQTFQRLIHEVVRGLDFIFPYIDDLFIASSS
FT                 PEEHREHLRRLFERLKQYNLAINIAKCEFGRDTLDFLGHSVSADGIRPLPD
FT                 RVRAIAEYKRPATVKELKRFLAMLNFYRRFMPNAIEHQIPLLSMITGNKRN
FT                 DRSPLTWNDTTTASFERCKQQLADATLLSHPVKSAELSLWVDASDIAAGAV
FT                 LHQIVDGNPQPLGFYSKKFDKAQLRYSTYDRELTAIYLAVRHFKYMLEGRS
FT                 CHIYTDHKPITFAFRQKLDKASDRQARQLDVIGQITTDIRHIVGKDNIVAD
FT                 LLSRINAVKSVPSLDYEALAESQKDDHDLQNIVEGKLNSSLKLKYFTIPGS
FT                 TKQLLCDCTGDRIRPFITERFRQAALQATHNLSHPGTRATAKLMTERFVWP
FT                 SIRKDSIAFARSCLQCQRSKVTRHIQSPVSRYSAPDSRFSHINIDIVGPFP
FT                 PSKGNRYCLTVIDRFTRWPEALPIPDMTAITIAEALVSGWISRFGVPSFIT
FT                 SDQGRQFESSLFAELTRLLGSSHLRTTAYHPQSNGIIERWHRTLKSSILCH
FT                 DTEHWSEHLPMILLGLRSAYKEDIKASAAEMVYGTTLRIPSEFFVSNPTNP
FT                 NEAEFVAKLRRTMRDLRPQPTAWHGNRNVFVHQNLRTCRNVFVRNDSVRPS
FT                 LSPPYEGPFEVVSRAEKFFTLKIRGRXVNVSVDRLKPAFALEDQQNNPVPA
FT                 DTTPVIKSPTRVTRSGRRVIIPERFH"
XX
SQ   Sequence 4072 BP; 1059 A; 1086 C; 946 G; 980 T; 1 other;
     gtggtgaccc cgacgtgagt tttttattaa cgttacaagt gcgtgatttt tgttcgagcg        60
     agttttcgtg tacgccaaaa aatgctagag gataaagtga ttacgaatcc gcctaccgcg       120
     aaccccgcgt ctcaaccggc cgctattgaa gcaatccata cgcctcgatt gaatccaccc       180
     agcatggaag acaccaacat agagacatat ttcatgtcgc ttgaattttg gttcgctgct       240
     tcgggaatag gcgcattgca cgatacgcga aagtacaaca tcgttatggc acaggtgcct       300
     cctaataaac tgactgagct aaggtcaatc atcgatggca caccgacgat ggacaagtac       360
     acatacataa agaccaaact gatcggttat ttcgcagaca gtcagcagcg gcgtttgcag       420
     cgcgtattgt ccgatatgcc gctaggtgat aaaaaaccaa gccagctctt gaacgagatg       480
     aagcgcgttg ctggcaacgc tcttaacgaa acggtgctta ttgatctttg ggcatccagg       540
     ctaccgccac atgcacaagc ggcagtgatc gcttctcgtg gtgacgccgc cgacaaaacc       600
     accatcgctg acgccattgt cgaatctttg gaacttagga gcattaacgc cgtcgaacga       660
     aaaaaatcag cgatggcgcc agaccacgtg cctgaaaccg cggtcaacga ccccatttct       720
     gatcttcgaa aagagatagc tgaattatcc aggcgcattg aaaacgtgtt tcccaaccga       780
     aggcatcgcg gacgatcggt ttcccgcgcc agttcaccag gtagacgctc atttagtcgc       840
     agggattttt cgactggccc gtgttggttt catcgcaaat ttggtagtga agctcgaaaa       900
     tgccgaaaac cctgcaccgc tcaaagctct tcaccttcac aatagcgacg ctctgctgat       960
     gctgcggtgg agattggcga actcaccact acagccgcaa tctttcgcct aagaattgcc      1020
     gatacaacca cgtcaatgca atttttaatc gacaccggcg ccgatgtgtc tgtggttccg      1080
     aaagatttgc tttcagccgg agttaaacca tcttcgataa aactgttcgc cgcgaacgga      1140
     tcgcccatta atgtatatgg tgaagtttta ttaaaagtaa acctcggtct tcgtcgtgag      1200
     ttcttgtggt cgttcctgat agccgatgta acttccggaa taattggtgc ggatttttta      1260
     ggcaattttg acctactggt agatattaaa cgaaagcgtc tcatcgataa caccacccac      1320
     ctcgagtcgg ttggattcct tgcgaaaagt gagcagtgtt cggttaaaac ttttcaggcg      1380
     gtttcaccct acgccgagtt gttagccgaa tttcccaaca tcactcgtct cgcgccaccg      1440
     ggtacaatct gcgatgcacc ggtctaccat cgaattgaaa cgactgggca gcctgtttat      1500
     gcacgcccac gacggctctc cccggacaag cttgaagctg cgagatccga attcgaacat      1560
     ctgatgaagc ttgggatatg cagaccttct agcagcagtt gggcgagccc gcttcacatg      1620
     gtgaaaaagg cggacgggtc ctggcgacca tgcggtgact accgcgcact caacgctcaa      1680
     accatcccgg atcgctatcc cttaccgtac ctgcaggact tctctaccat tctagaaggt      1740
     aaaactattt tttcaaaagt tgacttgcag aaggcgttcc atcaggtgcg aatccatccc      1800
     gaggatattg ctaagactgc catcacgaca cccttcggat tgttcgagtt ctcgttcatg      1860
     acctttggac tgcgcaacgc tgcgcaaaca tttcaacgtt taatccacga ggttgtgcga      1920
     gggttggatt tcatattccc ctacattgac gatctattca tcgcttcatc atcacccgaa      1980
     gaacatcgtg aacacttgcg tcgattgttt gaaaggctca aacaatataa tctggcgata      2040
     aatattgcca agtgcgaatt cggccgtgat actcttgatt ttcttggcca ctctgtatct      2100
     gctgatggta tccgtccctt gccagaccgc gtgcgagcta ttgcagaata caagcgtcct      2160
     gcgacagtga aggaattaaa aaggtttttg gctatgctaa atttttaccg taggttcatg      2220
     ccaaacgcga tcgagcacca gattccactc ctttccatga ttactggcaa caaacgcaac      2280
     gatcgatccc cgttgacctg gaatgacacc acaaccgcaa gtttcgagcg ctgtaagcaa      2340
     caactcgccg atgctacgct gttatcgcat cccgtcaaat ctgcagagct atccctttgg      2400
     gtcgatgcat ctgatatcgc cgcaggggcg gttctgcatc aaatcgtcga tggaaaccct      2460
     caaccactcg gattttattc gaagaaattc gataaggcgc aactgcggta tagtacctac      2520
     gatcgcgagc tgacagcaat ataccttgcg gtgcggcatt tcaaatacat gctcgaagga      2580
     cgaagctgtc acatctatac cgaccacaaa cccatcacat ttgccttccg ccagaagctt      2640
     gacaaagcct cggaccgtca agctcgccag ttggatgtga ttggtcagat cacaacggac      2700
     atccgtcaca ttgtgggaaa ggacaacatc gtggctgact tgctctcccg catcaatgca      2760
     gtaaagtcag tgccatccct ggattatgaa gccctagcag agagccaaaa agacgaccac      2820
     gaccttcaaa atatcgtaga aggtaaactg aatagttcgc ttaaactaaa gtattttacc      2880
     attccaggca gtaccaaaca actattatgt gactgcactg gtgatcgcat tcggcccttt      2940
     ataacggaac ggttccggca agctgcgctc caggcaacgc ataatttgtc tcatcctggc      3000
     acgcgtgcaa cggccaaatt aatgacggag cgatttgttt ggccaagcat ccgcaaggac      3060
     agtatcgctt tcgctaggag ctgcctgcaa tgccaacgct cgaaggtgac acgccacatc      3120
     caatcgcctg tatcccgata ctcggctccg gatagtcgat tctcacatat caacatcgac      3180
     atcgttgggc ccttcccccc gagtaaaggt aaccgttact gtctaacggt catcgacaga      3240
     ttcacgcgtt ggccagaagc gttacccata ccggatatga ccgcgatcac aattgccgaa      3300
     gctctggtat ctggatggat atctcgattt ggtgttcctt ccttcataac ttccgaccaa      3360
     ggacgccaat tcgagtcatc gctgttcgct gaactgactc gtttgctcgg atccagccac      3420
     ctgcgcacga ctgcgtacca tccacaatcg aatggaatca tcgaacgatg gcatagaacc      3480
     cttaagtcgt cgatcctttg ccatgatact gaacactgga gcgagcacct gccgatgatc      3540
     ctactgggac tgcggtcggc ctacaaggag gacataaaag cgtcggcggc cgagatggta      3600
     tatggtacaa cgcttcgaat accgtctgag tttttcgtta gcaacccgac caacccgaac      3660
     gaagctgaat ttgtcgccaa acttcgaagg actatgcgtg atcttcgccc ccagccgact      3720
     gcttggcatg gaaatcggaa cgttttcgtt caccagaacc tgcggacgtg cagaaatgtt      3780
     ttcgtgcgga atgattcggt acgaccatct ttatcacctc catacgaagg accattcgag      3840
     gtggttagcc gagccgaaaa atttttcacg ctgaaaatcc gaggccgamc agtcaacgtt      3900
     tcggtggacc gtttgaaacc tgcattcgcg ctagaggacc agcaaaacaa cccggtacca      3960
     gctgacacaa ctcctgtcat aaaatccccg actagagtca ctcgttctgg acgacgagtg      4020
     ataattcccg agaggtttca ctaaaaggta atctagtcta ggaggggagt ac              4072
//
ID   Gypsy-8_AnSt-LTR repbase;    DNA;    INV; 275 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-275
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 782-782 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 275 BP; 100 A; 68 C; 44 G; 63 T; 0 other;
     tgtggcagcc gtatccattt gtgcaccgta ctgtaccaca cgatacacga tacacgacac        60
     gatacacgac acgatgcatg atacacgaca ggatacacga tacacgatac acgctacaca       120
     ctacgcgcta aatctaacac taatacaaat tcataattgt aaggtaacgg taattgtaat       180
     aaaatagttt tagtcttatc tcgtatctcg aaccgatcgg tcttaaaacg ctcaacttaa       240
     aacgctcaac ttaaaacgaa agaaatcgcg ccaaa                                  275
//
ID   Gypsy-8_BrCo-I repbase;    DNA;    INV; 4428 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-4428
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1408-1408 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..4399
FT                 /product="Gypsy-8_BrCo-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MTENEKLLQLLADQTVVLQELAKQIAVNKLDNDALQT
FT                 NAAQRSMDLLANSLTSYIHDPLSKFTFSTWYARHEDVFTVDAKNLDDAAKV
FT                 RLLLRKLDEDSHSKYVNFILPKKSNENSLEETVKILKRMFGEPESLFSIRY
FT                 NCMKLVKKSSDDFIAFASIVNKECERFDFAKLTSDQFKCLIFICGLPTCDK
FT                 EFRTRLLMKLESDAALTLATLTVECKRLMDLKLDAELIAKTPSGTSTPYVK
FT                 QINDKSKKSPKTVDKASYSKSPAQDSSKKVPYRPCWLCGAKHFVKECTYVK
FT                 HLCRDCNKIGHKEGFCVISQQKNQSPNKGTSSSKQCKPIFTVSKVDHTAKR
FT                 KYIVVLINGCPIRLQVDTASDVTIISRENYKKLGHPSAIHCTELAQTASGG
FT                 PLSLEIEFECKILFNDVDTTGICYVSDAPDLNVIGNDWLDLFGLFDIPLNS
FT                 VCNQIMKTSDSSNQHEFMENFRQTFSSVFDSTLGTCTKTQVTLRVKPDAKP
FT                 IFRPKRPVAYAAVPVVEAELDRLQHLGVISPVSYSEWAAPIVTTKKPNGSI
FT                 RMCADFATGLNDALDTYHYPLPTPDSIFATLNGGKYFSKIDFADAYFQLVV
FT                 DESSRKYITINTHRGLFQFNRLPFGVKIASAVFQQIVDAMIAGLDRTCGYQ
FT                 DDITVNGRTIEEHNRNLIALFERIKEFGFSIRHHKCEFLMTEIEFLGFIID
FT                 EHGRRPNPAKIQAIVDMPEPHDVTTVKSFLGMINHYSKFVKEMKNLRAPLD
FT                 RLLCKDVKFEWNDECREAFNKAKQILLSDLLLAHYDPNVPIRVAADASSQG
FT                 LGAVILHRYADGSEKAIEHASRSLTPAERNYGQIEREALSLVFAVQKFHRM
FT                 IWGRKFVLETDHKPLLAIFGSKKGIPVHSSSRLQRWAISLMSYDFDVEYVK
FT                 TEKFGYADVLSRLIANHQSPLEPIIVSSVRIMEDSINRILVDAIRTLPVTA
FT                 EMIAHETLNDELLISVSNFLKSNWPTHLEDETLKVFYNRRESLCEMDGCLL
FT                 FNERVVIPLSLQKEILQRLHVAHPGIVRMKALARSYVYWPNIDKDITEYVQ
FT                 SCSRCASTAKAPIKATLSSWPKASNVWSRVHIDFAGEFQGHYYFVVVDSYS
FT                 KWPEIFVITNTTSAVAISKLREINARFGNMSILVSDNGPAFISEEFADYCK
FT                 SEGIYHIRTPVYHAQSNGQAERFVDTFKRALKKAKGEESIPNVLQTFLQRY
FT                 RMTPNAQLPANCSPAEVMLGRKIHSTLDLVKPRAKFDIVRDSKMEHQFNVK
FT                 HGAKNRIFYPNQKVYIRDFRDKKIIWTPAVIIERSGTVVYNVECDGNIWRR
FT                 HANQIRVRYEYENEESSPTLSLLYDTFDTAPQIGSSLPHHIAPQTNENLHE
FT                 TPASSIPLIPTRPQRNRHPPIRTDFSRSVKGRYLDL"
XX
SQ   Sequence 4428 BP; 1331 A; 935 C; 907 G; 1255 T; 0 other;
     ttttggcgac gaggataaaa gacattttaa tgaattttct aaatttcaat cgacaaattt        60
     tgtgaaaagt tcattgtgtt gtccgaacaa taagtgtaca tttcaatgac accttgaaga       120
     cccgtgtagg tcaagttaaa tgtgttcaac gaataacatt ttgtgcgttt ttggaacatt       180
     ttaatttcat aaacatttga caatgacgga aaacgaaaag ttattacaat tgttggctga       240
     tcaaacggtt gttttgcaag aattagcgaa acaaattgcg gttaacaaac tggataacga       300
     cgctctacaa acgaatgctg cacaacgatc catggattta ttggcaaatt cgcttaccag       360
     ttacatccat gatccactca gcaaatttac attcagtacg tggtatgctc gtcatgagga       420
     cgtatttacg gttgatgcaa aaaaccttga cgatgcggct aaggtacgat tattgttgcg       480
     taaattggac gaggattcac attctaagta cgtgaatttc attctgccga aaaaatcaaa       540
     cgaaaattca ttggaagaga cagtaaagat attaaagcgc atgttcggtg aaccggaatc       600
     attgtttagc atccgctaca attgcatgaa attggtaaag aaatcatccg acgactttat       660
     tgctttcgcc agtatcgtta acaaggaatg tgaacgcttc gattttgcca aattgacatc       720
     tgatcagttc aaatgtctga tttttatttg tggactgccg acatgtgaca aagagtttcg       780
     tactcgttta ctgatgaaat tggaatcaga tgcagccttg accttggcta cgttaactgt       840
     cgaatgcaaa cgtttgatgg atctcaaatt ggatgccgag ctgattgcaa aaactccatc       900
     gggcacatcc acgccatatg tcaagcagat caacgataaa agtaagaaat cacctaaaac       960
     cgttgacaaa gcatcgtaca gcaaatcacc tgctcaagat tcatcgaaaa aagtaccgta      1020
     tcgtccgtgc tggctgtgtg gagcaaaaca tttcgtcaag gaatgtacat atgttaaaca      1080
     cctttgtcgt gattgcaaca agattggaca caaggaaggt ttttgtgtta tctcgcaaca      1140
     aaaaaatcag agtccgaaca aaggaacgtc atcgtccaaa caatgcaaac caattttcac      1200
     tgtttctaaa gtggatcata cggcaaaaag gaaatacatc gttgtactca tcaacggatg      1260
     tcccatacga cttcaagtgg atacggcatc cgacgttact atcatctcac gtgagaacta      1320
     caagaaattg ggtcatcctt cagcgattca ttgcaccgaa ctagctcaaa ctgcatctgg      1380
     tggtccgctt tcgctggaaa ttgaatttga atgcaaaatc ttattcaatg acgttgacac      1440
     tactggcatt tgctacgtct ccgatgcgcc cgatttaaac gtaattggca atgattggct      1500
     ggatttgttt ggattatttg acattccatt gaattccgtt tgtaaccaaa taatgaaaac      1560
     gtcagactcc agcaatcaac acgagttcat ggaaaatttc cggcagacat tttcatcagt      1620
     ttttgattcg actttgggaa cgtgcactaa aactcaagtc accttacgtg tcaaacctga      1680
     tgctaagcca attttccgtc cgaaacgtcc agttgcttac gctgctgttc ctgttgttga      1740
     agcagagctg gatcgtttac aacacttggg tgtcatcagt cccgtttcat attccgaatg      1800
     ggctgctcca attgtcacaa caaagaaacc aaatgggtcg atacgaatgt gcgccgattt      1860
     tgctactggt ctcaacgacg cgctggacac ataccattat ccgcttccga cacccgattc      1920
     gattttcgct acgcttaacg gtggaaaata tttttcgaaa atcgattttg ctgacgcata      1980
     ctttcaactc gttgtggacg aatcatcgag aaagtacatc accatcaaca ctcatcgggg      2040
     cctatttcaa tttaatcgcc taccgtttgg agtgaaaatc gcttcagccg tttttcaaca      2100
     aattgttgac gcaatgattg ctggcttgga ccgaacttgt ggctatcagg atgacattac      2160
     ggtgaatggt cgtacgatag aagagcacaa ccgtaatctg atcgcactct tcgaacgaat      2220
     caaagaattt ggcttcagta ttcggcatca caagtgtgag ttcttaatga cagaaatcga      2280
     atttcttggt tttattatag atgagcatgg tcgtcgtccg aatccggcta agattcaagc      2340
     aattgttgac atgcctgagc cacacgatgt taccaccgtc aagtcgtttt tgggtatgat      2400
     aaatcattat tccaagtttg tcaaggaaat gaaaaattta cgtgctccat tggatcggtt      2460
     gctttgcaaa gacgttaaat tcgaatggaa tgatgaatgt cgtgaagcat tcaacaaagc      2520
     aaaacaaatt ctactttccg acctgctatt ggctcactat gatccaaacg tacccatccg      2580
     agttgcagct gatgcgtcgt ctcaaggtct tggtgctgta attcttcatc ggtatgcaga      2640
     cggttccgag aaagcaattg agcatgcatc acgaagtctc actccagcag aacgcaacta      2700
     tggacaaatc gaaagagagg ctttatcctt ggtcttcgca gttcaaaagt tccatcgaat      2760
     gatttgggga cgaaaatttg tattggaaac cgatcacaag ccattgctcg caatatttgg      2820
     ttcaaagaag ggcattccgg tacattcatc cagtcgactg cagcgttggg cgatatcatt      2880
     aatgtcatac gatttcgacg tcgaatacgt caaaacggaa aaatttggtt atgctgacgt      2940
     tttgtctcgt cttattgcca atcaccaatc gcctttggaa ccgatcatcg tttcttcagt      3000
     tcgcattatg gaggactcga tcaatcgaat tttggtggat gcgatacgta ccttacctgt      3060
     cactgccgaa atgattgccc atgaaacgtt gaacgatgaa ttgctcattt ccgtgagtaa      3120
     tttcctgaaa tcgaattggc cgacacatct tgaagatgaa acgttaaagg ttttttataa      3180
     tcgtcgtgaa tcgttgtgtg aaatggatgg ttgcctatta ttcaatgaac gagtcgtcat      3240
     tcctttatcg ttacagaagg aaattcttca acgactgcac gttgctcatc caggcattgt      3300
     tcgtatgaag gctttggctc gaagctacgt gtattggcca aacattgata aagacattac      3360
     tgaatacgtg caaagttgtt cccgatgcgc cagtacagcg aaagcaccca ttaaagcaac      3420
     attatcgtct tggccaaagg catcgaatgt atggtctcgt gtacacatcg atttcgctgg      3480
     tgaatttcag ggtcactact attttgtcgt ggtcgattcc tactcaaaat ggcctgaaat      3540
     attcgtcatc actaacacaa cttcagcagt cgcgatttcc aaattacgtg aaatcaatgc      3600
     tcgcttcggc aacatgtcga ttttggtatc tgataatgga ccagcgttta tttcggaaga      3660
     atttgctgat tattgcaaat cggaaggcat ttatcacatc cgaacaccag tttaccatgc      3720
     acaatcgaat gggcaagccg aacgatttgt cgatactttc aaacgagcac tcaagaaagc      3780
     taagggagag gaaagtatac ccaacgtcct tcaaacattt cttcagcgtt atcgcatgac      3840
     gccaaacgct caattaccag caaactgtag cccagccgaa gtcatgcttg gacgaaaaat      3900
     acattcaact ttagatttgg ttaaaccgag agcaaaattc gacatcgtcc gtgacagtaa      3960
     aatggaacat caattcaacg tcaaacatgg agcgaaaaat cgtattttct atccgaatca      4020
     gaaagtttac attcgtgatt ttcgagacaa gaaaatcatt tggacaccag ccgttatcat      4080
     cgaacgatct ggcacagtgg tctacaatgt cgaatgtgat ggaaatatct ggcgtcgtca      4140
     tgctaatcaa atccgagtca ggtacgaata cgaaaatgag gaatcaagtc caacgttaag      4200
     tttgttgtat gatacgtttg atactgcacc gcaaattgga tcatcgctac cacatcacat      4260
     tgcaccacag accaacgaaa atttacatga aactccagca tcatcaattc cacttattcc      4320
     aacccgacca caacgtaacc gtcacccacc aatccgtaca gatttttcac gatcagttaa      4380
     ggggcgatat ttggatcttt aatgcgtttg ttattttaag gggggaga                   4428
//
ID   Gypsy-8_BrCo-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-206
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1396-1396 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 206 BP; 74 A; 29 C; 37 G; 66 T; 0 other;
     tgttggatat gcacacacat acacatttgc atatgtgtca atgaagaaat cataatttgc        60
     tcgtcgtatc agttagtcgt tatcgagcgg tcaaatgaat taaatcgtaa aagcgaaatc       120
     atagttttgt tatcagagat aaattcgata caataaatga aatatgtaaa tcgaatccgt       180
     ttatgtttta ttgtgggaac acaaca                                            206
//
ID   Gypsy-8_BTa-I repbase;    DNA;    INV; 6443 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion, a
DE   sample sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6443
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 587-587 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~99% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2654..5089,5064..5837)
FT                 /product="Gypsy-8_BTa-I_1p"
FT                 /translation="DTLCNTHNFNNNVENSSTYINNLSSSKSSDSKWYISI
FT                 KINRHSLQVLVDTGAQTNVLPLYVFKQLNLNEDIIIPSKVNMRTLTGQPIP
FT                 SCGICHLSASFNNNRYNLKFHIVNLTCETLIGFDTAKQFDLLKFINPIEVR
FT                 DTSKSPNNSYIRGYENVFQGIGCLKDFEVKLNVNPNVQPICDPPRKLPFKL
FT                 MNELKTHLQELTEKEIIRKVDHYTPWVSSLVIVRKKDDSLRICLDPRALNT
FT                 AIDRPIHFIPDQNYIRTCLSNSKYYTKLDITAGFWNLKPSKDSADLCTFNS
FT                 PFGRYQFLRLAFGINATSEIFQGVMVDKFKDIDNLLIFIDDFCAHGKTTEE
FT                 HDKALHKTLKRAQELDIKFNLKKSKFFQTKIEYCGEVYSEGQIEIDPDRIK
FT                 AIKKLLPPTDKKGLQRFLGTVNYLASFIPTLALKTENLRKLLKKDSFWQWA
FT                 PNHETQFDNLKDLICNAPVLANYNAKKPVTMSVDASKDALGAVISQIRRPI
FT                 SFGSTILTPSQIVWGQIEKELLAIYFGCKKFDQFCYGQRIYVESDHKPLIT
FT                 LFRKPYKNIPLRLQRIMLKLERYDLSVKYVPGKKLLVADTLSRAPLKENLP
FT                 DSLEIEKDLEYQLAILDFSIDLAMSEEKKEVLINATEGDEVLNLLKQYYLE
FT                 GWPSKHKCHDLVKPYFQYKEQIHVHNNLIFNLNCIIIPKSKRPEILANIHE
FT                 GHLGFKACFKRAKSLVFWLFMKTDIQNICFSCETCMKFSNNNQKQPLQPHE
FT                 IPDFPFEKVGIDLFEISGKKISASCGLLFQISRGGLFKTGFNKLFRNKCLK
FT                 INLLFPWHTSIFSFHGILVKIMSDNGPPFNSKEFAHFTSEWQIHHDTSSSL
FT                 YPRSNGQVENTIRSVKKLIKKCVDTDQHFHSPLLNFRNTPKEDALTPSRLL
FT                 MSRSLRTKLPTVKENLAPSVIDSSKYLQPLQSRQHKMKEICDKGSKKLQPL
FT                 HVKDKIYFKKDFSSVQQPVTVMRKCHEPNSYIVQTPNGITYRRNRVFLKPP
FT                 YSQSHLQTHMESLNRPKVNKKVTFSEDLNLTKAKSTSFEIVSNKSKQNTEN
FT                 HPQASSDLPSPSV"
XX
SQ   Sequence 6443 BP; 2119 A; 1409 C; 1038 G; 1877 T; 0 other;
     tggtgtcagg tgtgtgtctt tatcattttc agttcgttcg gtttctttct cttcgtatga        60
     tggtctgaag ctctatttct gtgatctgtt agtcgccaaa ttatgtctag ttcaagtcga       120
     gtgtcgcgag gtcgcaaaag cctaaccgca atcggtcacc acatgcctta tctagtccag       180
     tcatgtccta attcaatgta agtcctgtca atgtgccctg tcctcgtccg aaaagtctgt       240
     ttgtccacgt atccgtccga cctatgtcct agtatgattc atacaattct aatgtcactc       300
     taagtcctgt gcctaatgct cagcctaacc tctgtcctta tccttaccat caaaacccta       360
     aaatcctctg tctcgtcgtc gtccgtcgtt tctcccattt cccatctgaa aaggcttcaa       420
     aatttcaaac ttaaatacag attgccctcc aatgtcattc gagggaaacc tctccacaaa       480
     ttggaaacag tggtatgcgc agttcgagat atgacttgtc gccactgacc ccatcacagc       540
     ttctgatcac agaaaaaacg ctcttctgct caagttcatg tctggtaatg ccttcaccat       600
     ttaccaatcg ttccaaatcg acatatccaa aaccaaattt gttgacctgg ttgcactctt       660
     tcacaaacat ttcgcaccca agcccaacgc aactgttgac cgaatcaagt tatttagcag       720
     aaagcaaaaa gcggatgaaa ctcatgaatc ctatgtcact gaccttcgca atctttctcg       780
     cacatgccag cttggtgaca ttcaagacag cattgtcaaa gatctgttca tctgtggtct       840
     tcatgattca agcatcaagg aacgcttact tctcgaagac aagtcaacgc tcgctgagac       900
     atttgaattt gcccaaaaaa ttcaactctc caaacatcgt atggagcaac ttcaatcaac       960
     acctgaggtc aatgtcttaa acgagcaatc atcatcatca aatcgccatt ttccatcaag      1020
     gtacgaacgg taccgatcac catcaaaacc caggcggtcc tattctccag caagcgtaaa      1080
     tcactacaat tctcgctctg cctaccccta ttaacgttca aggaacagcc gacatcgtcg      1140
     aaattctcct catccaagat actaccggtc tcgatcatcg tctcggagtt ctagccgttc      1200
     tcgcagcccg agtcccagac gtcatttcaa ctatcgtccc aaaggagaaa actgttccaa      1260
     ctgtgaccaa cattatcatg cgtacaagtg tcctgctcat ggtagaactt gcgacaattg      1320
     tggtaaacta aatcattttg cccgttattg ccctgaaagg aaacttcaca atctaaatgt      1380
     tgaatggtca gacgatgata tcttgttcat caacaacatt tcctgtagct gtgctaaatt      1440
     tttaccaact aacgcaccat ctgctgtcga tgtctctttc agtcccacca agaaagtatc      1500
     taatgacttc tctaccaatc atgtcaaatt atcatcacat gacaatgttt atcacagctc      1560
     tgtttcaaat cttgctcacg aagcaacatc atcatccaat gtgaactttt aactatcctc      1620
     tagtgaactg atgaacttct ctacttcaac taccagttca cttttatctc caaattctaa      1680
     tacatacaat tttcacaatt ctacatagag tgtccaaaaa gtaccgagac tggttctgta      1740
     acttcgagac taggatagat acagacatga tcttggtttt attttaaaga tcaactcaat      1800
     acatatcgat taagaccaag atcagctcaa tcggataaaa attgaccgag ttatggcaat      1860
     ttgaaatcaa ttaggaaagt ttatccctac gatttttagg gaagattctt catcgccgta      1920
     aatcgaaaaa tcggccatta catcggtcca tcggtcattt atcaacattt tgtaccacca      1980
     aacacaataa ttgacagtgc gtattattgc aaagtgctaa aggagttgag aatgcacatc      2040
     tcccggaaac ggccagactt gaaagcttcg tggatactcc atcaagacaa tgcgcggcct      2100
     cgcacatcga acaacacgtt aacaactgaa tttatgagta aaaatggagt tgaaacaatc      2160
     cctcatcccc ctgttagccc tgacttggct ccatgtgatt tttggatgtt tcctacgctt      2220
     aaaaaggagc ttcgcggacg aagattcgaa tcgaagaccg aaatccagaa tgcagttcaa      2280
     aactttttcg atgccattcc agaggaagaa ttctggaaaa cgatgttgga taagtctcaa      2340
     gagcgcatga aaaagtgcat ccggtttgat ggacggtact ttgaaaagca aaaggaagtt      2400
     atggaagatt cggaggaaaa cggatacgaa tattaacatt ttgaatcctg ctgagcgaaa      2460
     aatactccta aaaaaccgta ggggtaaact ttcctcactg atttcaaatt gccataactc      2520
     ggtcaatttt tatccgattg agctgatctt ggtcttaatc gataggcatt gagttgatct      2580
     ttaaaatgag accaaaatca tgcctgtatc tatcttaatt ttgaagttac agaaccagtc      2640
     ccggagctat taggacaccc tatgtaatac acacaatttt aacaacaatg ttgaaaactc      2700
     ttctacatac atcaacaact tgtcatcttc aaaatcatct gacagcaaat ggtatattag      2760
     tatcaaaata aatcgccatt ctttacaggt cttagtcgat acaggtgccc aaacaaatgt      2820
     cctacctctg tatgtgttca aacaacttaa cctcaacgaa gacatcatca taccctctaa      2880
     agtaaatatg agaaccctaa cgggtcaacc tattccatct tgtggtatat gtcatttatc      2940
     cgcatctttt aataacaatc gttacaacct aaaattccac atcgtaaacc tgacctgcga      3000
     aacactaatc ggtttcgaca ccgccaaaca gtttgatctg ttgaaattca tcaatcccat      3060
     cgaggtccgc gacacatcaa aatctccaaa caattcatat attagaggtt atgaaaatgt      3120
     tttccaaggc ataggttgtc tcaaagactt tgaagttaag cttaatgtaa accctaatgt      3180
     tcaaccaata tgtgatccac ctagaaaatt accatttaag ttaatgaatg aactcaaaac      3240
     gcatcttcag gaattgacag agaaagaaat cattcgcaaa gtggatcact acactccttg      3300
     ggtaagctca cttgttattg tccgcaaaaa ggacgattca ctcagaatct gccttgatcc      3360
     cagagcatta aacacagcca ttgatcgtcc aattcatttt attcctgacc agaattacat      3420
     tcgaacttgt ctatccaatt ccaaatacta caccaaacta gatatcactg ctggtttttg      3480
     gaatctgaaa ccaagcaaag acagtgctga cttatgcact tttaattcac ctttcggtcg      3540
     ttatcaattc ttaaggcttg cttttggtat caacgcaact tcagaaattt ttcaaggagt      3600
     catggtggat aaattcaagg atattgataa tcttttaata ttcatcgatg atttctgtgc      3660
     ccacggtaaa actacagagg agcatgacaa agctctacac aaaaccttaa aacgtgctca      3720
     ggagttggac attaagttca atctcaagaa aagtaaattc ttccaaacaa aaattgaata      3780
     ctgcggggaa gtttattccg aaggtcaaat agaaatagat ccagatcgca tcaaagcaat      3840
     caagaaatta cttcctccta cagacaagaa aggcttgcag aggtttcttg gcactgtaaa      3900
     ttatcttgca tctttcattc ctacattagc tctcaaaact gaaaacctgc gtaaattatt      3960
     gaagaaagat agcttttggc aatgggcgcc caatcatgaa acacaatttg acaatctgaa      4020
     ggatttgata tgcaatgcgc cggtccttgc aaattacaat gccaagaagc ctgtaaccat      4080
     gtctgtcgat gcgtcaaagg atgctctcgg tgctgttatc agtcaaatta ggcgaccaat      4140
     ttcttttggc tccactatcc taacaccctc acaaatagtg tggggacaga tagaaaaaga      4200
     attgctagct atatattttg gttgtaaaaa atttgatcaa ttctgttacg gtcaaagaat      4260
     atatgttgaa tctgaccaca aaccattaat aactctcttc cgaaaacctt acaaaaatat      4320
     ccctttacga cttcaacgca ttatgcttaa acttgaacgt tatgatcttt ccgtcaagta      4380
     cgttccaggc aaaaagctgt tggttgctga tactcttagc agggcacccc ttaaggaaaa      4440
     tttaccggat tcccttgaga ttgaaaagga tttggaatac caacttgcta ttcttgattt      4500
     ttccattgac ttggctatgt cagaggagaa aaaggaagta ttaataaatg ctactgaagg      4560
     tgacgaggtt ttgaatcttc taaaacaata ttatcttgaa ggttggcctt caaaacacaa      4620
     atgtcatgat ctagtgaaac cttactttca atataaagaa caaattcatg tacacaataa      4680
     tctaattttc aatttaaatt gtataattat acctaaatca aaacgtccag aaatcttagc      4740
     taatattcac gaaggtcact tggggtttaa ggcatgtttt aaacgagcta agtcattagt      4800
     tttctggcta ttcatgaaaa cggatattca aaatatttgc ttcagctgtg aaacatgcat      4860
     gaaattttcc aacaacaatc aaaaacaacc tcttcaacca catgaaatac ctgattttcc      4920
     tttcgaaaaa gtaggcattg atctttttga aatcagtggc aaaaaaatat ctgcttcttg      4980
     tggactatta ttccaaatat ccagaggtgg tctctttaaa acaggcttca acaagctatt      5040
     tcgtaataaa tgccttaaaa taaatcttct ctttccatgg catactagtt aaaatcatgt      5100
     cagacaatgg tcctcctttt aattctaaag aatttgcaca ttttacgtca gaatggcaaa      5160
     ttcatcatga tacttcatct tcgctgtacc ctaggtctaa cggccaggtt gaaaatacaa      5220
     ttaggtctgt taaaaaacta attaagaaat gtgttgacac tgatcagcat tttcactctc      5280
     ctcttttaaa cttcaggaat actcccaaag aggatgctct aaccccaagt cgattgctta      5340
     tgtctaggtc attaagaact aagctaccta cggttaagga aaacttagca ccctcagtta      5400
     tagactcctc taaatattta caaccgttac aaagtagaca acacaaaatg aaagaaattt      5460
     gtgacaaagg ctctaaaaaa ctgcagcctc tccatgtaaa agacaaaatt tatttcaaaa      5520
     aagatttttc tagtgtacag caaccagtca cagtcatgag aaaatgtcac gagcccaact      5580
     cttatattgt gcaaacccct aatggaataa cttacagaag aaatcgtgtt ttcttgaaac      5640
     caccttactc acaatctcac ctacaaacac atatggaaag tcttaatcgc cccaaagtta      5700
     acaaaaaagt cacattcagt gaagatctaa acttaacaaa agcaaaaagt acctcattcg      5760
     aaattgtttc taacaaatca aaacaaaaca cagaaaatca tcctcaggct agttctgatc      5820
     ttccctcacc ctctgtctga ctgccaaata cagcacatac aaacaaatca acctctgttt      5880
     cactgacaaa tacaacgcat acaaaagaat acaagcaaat actacatgat gatattaatg      5940
     aaattggaga aagtgaaccc gatcttattg aagaaagtga cgtcagaatt agaaaacctc      6000
     cagcaaggtt ttctccaagt gactatccgt aagtcttaaa aaattgaaaa tgacaaagac      6060
     aaaacgtacc acttgcttgt ctgatccata aatctataat gtctgatctt gtcttgatac      6120
     tttataaatg cttgtttgat cttattatat cttatgtatt cataattata atgtaccact      6180
     tgcttgtctg atccataaat ctatagtgtc tggttaattc ttaggactaa gttgtgatca      6240
     agcaaaaatc caaacaacaa agacaaaacg taccacttgt ttgtctgatc cataaatcta      6300
     taatgttcga tcttgtcttg atactttata aatgcaagtt tgattttatt atatgttatg      6360
     tatgcataat tatagtggac taggcagttg ccaaacattg tacgttcatt aaaaaaaaaa      6420
     aaaaaagaaa gaaaaaaggg agt                                              6443
//
ID   Gypsy-8_BTa-LTR repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-136
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 613-613 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~99% identical to each other.
XX
SQ   Sequence 136 BP; 30 A; 40 C; 33 G; 33 T; 0 other;
     tgtcagggtg agacctggca acgccgcttg tgagcccagc cgccggggca gttgtcggtt        60
     cggcaggaca ttcaatatac agacatcatg gcgtcctcaa cgtaattcac ttgttcctta       120
     tttcccacac ctaaca                                                       136
//
ID   Gypsy-8_CFl-I repbase;    DNA;    INV; 6155 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-6155
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1022-1022 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1553
FT                 /product="Gypsy-8_CFl-I_1p"
FT                 /translation="MSQVDPEDDWIFVLSREQLLEELQRRKLSTEGSYSIQ
FT                 TARLLRRVRKDRKFNTDKMSDEELLEVPTDAMARPDSPMDQARFSVPSGSR
FT                 DTPRSRGRDFSREYTGNSAMTAYNVMRKWNLKFSGTRGEDAETFLLRIEEG
FT                 RELVPVSDEDILRCLPFFLTGIALYWFRSKRNRLSDWNAFKDAWRTRFGDP
FT                 DFQFALREEIMRRTQGEHESVADFFSCLRAMFDRLSPPWTESEQVSSAFRN
FT                 LLPRLQQSIRRNEVGNLDALEDLATRVEASYLLSQRYRAPPTPEKSLFPDL
FT                 AYHAPRNTKQPSRGRETLAALSTSEAESESKSNSRKERRNKNRAARAATGT
FT                 EAAQEASSSSGATAADSTASRNSTRKCWNCEGVGHISRNCKAAPRCTVIVA
FT                 VERK"
FT   CDS           1607..4882
FT                 /product="Gypsy-8_CFl-I_2p"
FT                 /translation="MGGDPTPIQPQPPFRVVNCSREFSFSAFGCRDIPSML
FT                 FIRVNLLGNEISALVDCGSTRTFLGSNVVELVNRLNLKFRKSDGRRVVTAT
FT                 GQTTRVRGEVDLPFSLCGRTNSLKAYALPSLAIPCILGLDFLSLFGMIVNF
FT                 SRQEWYFEDEPAKVYRFENQPINSVCHVNLVENSVSRESGDSSASGSANVA
FT                 EPKPDNSPRENSLSIAKTTRVRKTKRVRLSKSDPFICCGLNELSSRESQKL
FT                 AKFLKDHIVGDPDKPGATNLTEHKIDVGGHTPIKQRYYPVSPKIQEAIYAE
FT                 VDKMLAAGIIEPSKSEWSSPVVMIKKPNGSYRFCLDFRKLNSVSKKDAYPL
FT                 PYMNAILDKLRSASYISTIDLSQAYFQIPLERNSRELTAFTVPGKGLFHFT
FT                 RMPYGLTGAPATFQRLLDRLIGPEMEPHAFAYLDDIVVVTRTFEEHLTWLK
FT                 RVLDRIREAGLTINPEKSKFCRSQVKYLGFLIQQEGLKVDPDKTAPIVEYP
FT                 PPKNIKQLRRFIGMASWYRRFIPQCATRLEPLTRLLRKNFSWEWGDEQKSA
FT                 FESVKSCITSPPTLSCPNFELPFTLQTDASSVGLGAVLTQESEGVEHVIAF
FT                 ASRALSEAEKKYSTTEQECLAVVWSIKKFRPYLEGYNFKVITDHSSLRWLH
FT                 NLKNPTGRLARWALELLEYDYTIEHRKGALHHVPDALSRMYETTDELCAVA
FT                 ITGDTWYDARVRDVENEPRKNSGWKIKNDQLYFRKPNAVVSQVVDDLEQWK
FT                 LVLPKEARANVIREAHDVPQSGHLGVEKTYQRVATRYFWPRMFKEIANYVR
FT                 HCDVCQRTKVEQNVPMGLMGRRAVETPWTVVAADIMGPFPPSKSGNAYILV
FT                 IQDLFTKWIECSPLRKATGKKIRELLNELIVNRWGAPRVLLTDNGTEFINR
FT                 ELQAFAEEHGIVHSTVPPYHPQANPVERVNRVLKTMITAFLENDHREWDVH
FT                 LAEFRFAYNTAYHTSLQATPAFLNFGREPPPVNTVRGRHQPAVEVAETNPA
FT                 NWKERMERIQALRNWVVENLEAAHSKQAHYYNLRRRDHRFAIGEQVLKRQH
FT                 VLSSAAQNISAKLATKYHGPFTIAKMLSPVRVRVA"
FT   CDS           4939..5697
FT                 /product="Gypsy-8_CFl-I_3p"
FT                 /translation="MFHLTPQATKILTVAGGCRENSARDIXTSSKLSTSCA
FT                 RDSGRRWPTRCRRELERRVTTRGAVVREFPAQSEAGVQAVVATRDAGTQRA
FT                 VEVRNEVAVQVTPKDPEPDSTSPEDWETPKRESPWDSPRERGSPSPXGVAE
FT                 TSCRTPVAESSSPPEGCWNCGSSSHLARECPREERRIYCFRCGQPGVTVKS
FT                 CPYCRAGWLAQGPYKEGVATKVRIPLEAAERGVTSARDPTKAVARSAYPES
FT                 FFLSLLSLSLEI"
XX
SQ   Sequence 6155 BP; 1521 A; 1401 C; 1655 G; 1570 T; 8 other;
     aaaatttggc gcccaacgtg gggccacgtc gcaaacaaaa gaaaaatcta gcgcctgaaa        60
     aaggggcacg cgttgagaag gagaaagttc ggggagctta tgcgagctaa attatttgtc       120
     gagtcatttc aaagtcactc ttcttttgtc gtgtgttcgt ttcttttgta gttaatgctt       180
     tcgttcgaac atttcttttg ccgaccttta cgtatttgtt gtcgaccttc gattatttaa       240
     acattaacgg ccttatcttg tgttattgag ctgtcgacgt gtattatcgc ggtgatcagg       300
     ccacgtcttg ctgagttcga gcttatttat tttgtttcgg gtttttctct ctgtatcgta       360
     tgagtcaagt cgacccagag gacgactgga ttttcgtgtt aagtcgcgaa caattattgg       420
     aagaattaca gcggcgtaaa ctttcaacgg aaggaagtta ttcaattcag accgcgcgtt       480
     tgctgcgtcg cgtacgcaaa gatcgaaaat ttaatacgga caaaatgtcg gacgaggaac       540
     ttttagaagt ccctacggat gcgatggctc gacctgatag cccgatggat caggcgagat       600
     tcagcgtacc ctctggctct cgcgatactc cgcgctcgag aggacgagat ttttcgcgcg       660
     aatacactgg aaattccgcg atgacggcgt ataatgtcat gcgtaaatgg aatctgaaat       720
     tctcgggtac gcgaggggag gatgcggaaa ccttcttact ccgaattgag gaaggtcgcg       780
     agttagttcc cgtatccgac gaagacattt tacgttgctt gccgttcttt ctaaccggta       840
     tagcacttta ttggttccgt agtaaacgca atcggctgtc ggattggaac gcttttaaag       900
     atgcgtggag aacgcgattc ggggacccag attttcaatt tgctcttcgc gaagaaatta       960
     tgcgaagaac tcagggggaa catgagtctg tcgctgattt tttttcgtgt cttcgagcta      1020
     tgttcgatcg gttgtcgcca ccatggactg aatctgagca agtaagcagc gcgtttcgga      1080
     atttattacc gcgcttacaa cagtccatcc gtcgaaatga ggtgggaaac ttagacgctt      1140
     tagaagattt ggcgactcgc gtagaagcta gttatttgct gtcgcaacgt tatcgggcac      1200
     ccccgactcc ggagaagtca ttgtttccgg atctcgcgta ccatgcaccg cgtaatacga      1260
     aacagccctc gcgaggccgg gaaactcttg ccgcgttgag tacatctgag gcggaatcag      1320
     agtcaaaatc gaattcgcga aaggagagga gaaataaaaa tcgcgcagct cgagccgcga      1380
     ccgggacgga ggccgcacaa gaggcttcgt cgtcctcagg ggcgacagcc gcagattcga      1440
     cagcttcgcg aaattccacg cgaaagtgct ggaattgtga gggcgtaggt cacatttcgc      1500
     gaaattgtaa agccgctccg cgatgcactg ttatcgttgc ggtcgagcgg aagtaacgtt      1560
     acgaacgtgt cccgactgtt cgggaaaaga gtagaggagt cgaataatgg ggggggaccc      1620
     gactcctatt caaccccaac ccccttttcg tgtcgttaat tgttctcgtg aattttcgtt      1680
     cagtgctttt ggttgtcgtg acattccgtc aatgttattt attcgtgtta atttattagg      1740
     aaatgagatt agcgctctag tggattgtgg ttcgactcgc acttttttgg gatctaatgt      1800
     tgtcgaattg gtgaacaggt tgaatttaaa atttcgaaag tcggatggcc gacgagtagt      1860
     tacggcaacc ggccaaacga cacgtgtkag gggggaggtg gatcttcctt tttcgttatg      1920
     tggtaggact aattcgttaa aagcgtatgc tttgccgtct ttagcaatcc catgcattct      1980
     gggacttgat tttttgagct tgtttggtat gatagtaaat ttttcacgcc aagaatggta      2040
     ctttgaagat gaaccagcca aggtgtatcg tttcgagaat cagccaataa attccgtttg      2100
     tcatgtaaat ttagtcgaga attctgttag tcgcgaatca ggtgattctt ccgcgtccgg      2160
     aagcgcaaat gtagcggaac cgaagccgga taacagcccg cgagaaaata gtctgtcgat      2220
     cgcgaaaaca acccgtgttc gcaaaaccaa acgagttcgg ctgtcgaaat ctgatccgtt      2280
     tatttgctgc ggtttaaatg agctgtcgtc gcgcgaaagt caaaaattag ctaaattctt      2340
     gaaggatcat atagtaggcg atccggataa accgggagcg accaatttaa ccgaacacaa      2400
     aattgatgtc ggcgggcata ctccgattaa acaacggtat tatcccgttt cgccaaaaat      2460
     tcaggaagcg atctacgcgg aagtcgataa aatgttagcg gcaggaatta tcgagccatc      2520
     taaaagcgaa tggtctagcc cggtcgtaat gataaagaaa cctaacggca gctatcgatt      2580
     ttgtctmgat tttaggaaat taaacagcgt ttcgaagaag gatgcgtacc cattaccata      2640
     catgaacgca atcctcgata aactacgatc agccagttat atttcgacta tcgatctaag      2700
     ccaagcatat ttccagattc cgcttgagag aaacagtcgc gaattaacgg catttacggt      2760
     accgggwaaa gggttatttc atttcacccg aatgccgtat ggcctcaccg gtgcccccgc      2820
     gacatttcag cgattacttg atcggcttat aggccccgaa atggaacctc atgctttcgc      2880
     ttacttagat gatatcgttg tcgtgacgcg tacttttgaa gaacatctga cttggctaaa      2940
     acgcgtatta gatcgaatta gagaggcagg ccttacgata aatcctgaaa agagtaaatt      3000
     ctgtcggtct caggtaaaat atctcggatt tctaatccag caggaagggc ttaaagtaga      3060
     ccctgacaag accgcgccga ttgtcgaata tccgccaccg aagaatatca agcaattacg      3120
     acgttttata gggatggcgt cttggtatcg ccgatttata ccgcagtgtg ctacgcgttt      3180
     agaaccgcta actcgtctcc tccggaagaa tttctcttgg gagtgggggg atgaacaaaa      3240
     atctgcattt gaatcggtta aatcgtgcat tacgtcgccg cctacgctgt cgtgtccgaa      3300
     tttcgagctg ccgtttactc tgcaaacgga tgckagttcg gttggtttag gagcggtatt      3360
     aacgcaagaa tcggaaggcg tggaacatgt gatcgcgttc gcgagtaggg cgctgtcgga      3420
     agccgaaaag aaatactcta cgaccgaaca ggaatgtctg gctgtcgtct ggtcgattaa      3480
     aaagtttaga ccgtatctcg agggatacaa ttttaaagtc atcacggatc atagcagcct      3540
     acgatggtta cataatttaa agaatcctac tggtcgatta gcgcgatggg ctctagaatt      3600
     attagagtac gattacacga tcgagcatcg gaaaggagca ttacatcatg ttcctgacgc      3660
     gttgtcgcgt atgtacgaga ctaccgatga attatgtgct gtcgcaatta ccggagacac      3720
     ttggtatgat gcacgcgttc gagacgtgga gaacgagccg cgtaaaaatt ccggttggaa      3780
     aattaaaaac gaccaactct atttccgaaa gccgaatgct gtcgtatcgc aagttgtcga      3840
     cgatctcgag cagtggaagc tagtacttcc taaagaagcg cgcgcgaacg ttattagaga      3900
     ggctcacgat gttccgcaat caggtcattt aggagtcgag aagacttatc agcgagtagc      3960
     gacgcgttat ttctggccgc gtatgtttaa ggagatcgcc aattatgttc gacattgtga      4020
     cgtctgtcag aggacgaagg tagagcaaaa tgtgccgatg ggtttaatgg gacgccgagc      4080
     tgtcgaaact ccgtggacgg tagtagcagc ggatattatg ggtccttttc cgccgagtaa      4140
     aagcggtaac gcgtacattt tggtaataca agatctgttt accaaatgga ttgaatgtag      4200
     cccgcttcgg aaagcaacgg gcaaaaagat ccgcgagctc ttgaacgagt taatcgtgaa      4260
     tcgttggggc gcgccgcgag tactcttgac ggacaacggc acggaattta tcaatcgcga      4320
     attgcaggcg tttgcggaag aacacggcat agttcactct acggtacctc cgtaccatcc      4380
     gcaggcgaat ccggtagagc gagttaatag ggtacttaag actatgatta cggcttttct      4440
     cgagaacgat caccgcgaat gggatgtaca cttggctgag ttcagattcg cttataatac      4500
     ggcgtaccat acttctttgc aagctactcc ggcgttcttg aattttggca gagaaccgcc      4560
     gccggttaac accgtgcgtg ggaggcacca gccagctgtc gaggtcgcgg agacgaatcc      4620
     cgcgaattgg aaagagcgca tggaaagaat tcaggctttg cggaattggg tagtagaaaa      4680
     tttagaggct gcgcatagta aacaggcgca ttattacaat ttgcgaagac gagatcaccg      4740
     ttttgcgatt ggcgagcaag ttctgaagcg gcagcatgtg ctgtcgtcag ccgctcagaa      4800
     tatttcggcg aaattagcga ctaagtatca cggtccgttt actatcgcga aaatgttgtc      4860
     gccggtacgt gtacgagttg catgatagcg ctcatagatc gataggcaaa gtacatatta      4920
     aggacttgaa accatataat gttccacctg accccccagg caactaaaat actaaccgta      4980
     gcaggaggat gtcgcgagaa ttccgcgaga gatatcgmga cgtcatcgaa gctgtcgacg      5040
     agctgcgccc gggattctgg acggcgctgg ccgacgaggt gcagacgcga gttggagagg      5100
     cgcgtcacca cccgcggcgc cgtagtgcgc gagttcccgg cgcagagtga ggccggggtg      5160
     caggctgtcg tcgcaactcg ggacgcgggc acccagcgag ctgtcgaggt ccgcaatgag      5220
     gtcgcggtcc aggtgacccc aaaggacccc gagccggact ccacgtcccc ggaggactgg      5280
     gagaccccga agcgggagtc cccgtgggac agcccccggg agagaggatc tccctctccg      5340
     sacggagtgg ccgagacctc ctgccggacc cccgtcgccg agtcctcgag tccgccggag      5400
     ggctgctgga actgtggctc cagcagccat ttggccaggg agtgcccccg agaagaaagg      5460
     aggatctact gcttccgctg cggccaaccg ggggtgacgg tgaagtcctg cccgtactgt      5520
     cgcgccggat ggttggcgca gggcccctat aaggaaggag tggccaccaa ggtccggatc      5580
     cccctmgagg ccgccgagcg aggagtaacc tccgcccggg accctactaa agctgtcgcc      5640
     cgctccgcgt atccagagtc tttttttctt tctcttcttt ctctctctct cgagatataa      5700
     tatttttcgt tttcttttcc cttcttcgta gctgtcgttt tcgtgaacca actattttgt      5760
     aagatcgcta gagagaataa atggatcttt gctatctcct gtctttaatt ttatggtttt      5820
     ccttttcttt ttcgtaccgc aatccatttt agttgtcgtt agcgtgtagc gtcgcgaacg      5880
     tcgttcgcga ggactcgtaa tcatcgggac cgcgaacccc gcgagagacg gcctcgcgaa      5940
     ccagaatcgt ggacagcgat agctggtcgc ttggcgctgt ttttcgttag tgagaagttt      6000
     cggtaatttt tttttgtgtt accatttgtg ttcgtgtctt cctcggctcc ggggactttg      6060
     gtcgcccgaa cgtgtgcgag cggacgaagg tagcgtccga ttagtggcca tgatgggtga      6120
     ccgaagccga tatgttctct cctggcatgg ggsgg                                 6155
//
ID   Gypsy-8_CFl-LTR repbase;    DNA;    INV; 2329 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2329
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1023-1023 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2329 BP; 489 A; 568 C; 622 G; 643 T; 7 other;
     tgtgacgttg ccgtcctgtc gcgcgtccat ccgccccgat aattttaacg gggcgcgggc        60
     cgagcggccg cgccagaagc cacgttagag agaacattat cgaactcccc ggagagacga       120
     gcgagattat tatatttgtt gcgtttatta attttatttg tmattctttt tgtatcgagc       180
     gaatttcggg caacccgccg gagaagatcc ggagggcgag gggcgcatcg agggatttta       240
     cgtcgcggcc ggcgacacgg cgcttcgaca gccgacggcg gaggaaatag cgcccgagaa       300
     atcgagccac cggacgccga gggggcaaca tcgcccctct tcsgmtagtc agggcggagg       360
     cccgacctgm gctaccctcc cmgaggagga gagagcgaca gcagagcctc caccgggcca       420
     ttaaaaatgg gcccgcgaca gcgcaatttc aatttgaggc cgtttcgcgc caggcgccaa       480
     aatacctcgc gtctcgcgag gcgccaggat ctctcgcgtg ccgcgatctg attggccgcg       540
     gggctgcgca cccctctacg cggtcattga cgcagctatc gaccctggat agagagatcc       600
     agggatcact ctggtgcggg cgctcgcctg agatagtcac tatagtgagt ttcgttgtcg       660
     ttcttttgtg agagtcgccg ttgtcgagat atccgcagag gacgaggccg aggaccatcc       720
     ccagcgagga ggaagagtat cggtgaggtt gcccatcttt tctttgtgag ccacatacgc       780
     gattcggtcc gccggccggc cgttctgccg ccgtcgccat tttcgtgttt cgcgaccgct       840
     caggcccggt gccgagccgt cgatattttg tgaattttcg ggcgatcgga ggcaagcgac       900
     cgaggaaaag cggacaatcg tattgtaggc attaattgat aaggcaacgt tcgtctctct       960
     ccgggtttcg gggtgttcat tacgcgtagc tatcgaccgc cgaatatcga ccgcgtgcgc      1020
     gaaggatcgc gaaaagcgta caccgcccgt gttgtgtcgc tgtcgttgcc gcgtggaata      1080
     ttcccgcaaa ttatctcggg gcgatttttg tgtctgattg cgtggatgtc gtcgtcgatt      1140
     gttaagtgtg cgtgtgagcg tctattgtat tatatcgtat tgtgtgcgtt agagtatttg      1200
     cgtcttcgtc gcgcttatta cgccgkcgaa tagagcgtag taagtgataa tttgcgtctg      1260
     tcgaatgtgt cgcggtgcga gataatcgcc aaagtacgac cgagagtgaa atctgagctg      1320
     cttgcgcgga agaaagaggc gaaacgccgg cagagaaaaa tctccggccg ccgtcggcta      1380
     tcgaatatcg aacatatcgc tcgcctgtcg catacgagat ccgtcttcgc aaaattatta      1440
     attattttcg atctatggtt aattatgctg tcgaattatt aagctgtcgt ttagaattgc      1500
     gaactgggaa attgtgagga aaagtccgta gcgataagtc gtcgatttgg ctgccgaaat      1560
     tacgatacgt tttgggtgaa tattatccgc gaatatttcc gtgtcgaaaa tcctttgtat      1620
     tctgagaagt atcgttcagt ccagcgaact ccggccataa aaacgggctc ggataaacaa      1680
     caggaatgcc ttagcgctct cttttcggtt gtcgatttcg agcgaacatt tgmtttgaat      1740
     aacgtcttat tattcgtgcc aggattgatt tgattgtgta tttcgctttc tcatcttttt      1800
     tttgaattta ttgtgaaccg tcgttttcaa tctgatttgt tattcaagtt tatttttaca      1860
     ttttactttt atattatttc tctattaata aatttgttat atttctttgt taaactcgcg      1920
     taatttattt gagtgttagt ctctcgtggt tgtcgatatc cgtctttgcg tctgtcgcat      1980
     tttggattat tgaagtctcg cataatcaat tggctttctc taaaacccct cccctctgcc      2040
     gttaggcgag ctagtcggcc cgtggcgaag caggctatca tttttcgcgt tctttgacgt      2100
     ttcgtggaaa actgatgcgt gaaagaccgc atctggcgcc caacttatcg agatatcgaa      2160
     acggcctccg ctccgccgcg gctcgcgcga gaacgccctc catccctgtt cctcagagcg      2220
     cgagtacatt aatttcgcta ttttttttga cggcgttttc gctcccccgc gcacgctccc      2280
     ctccaacacc tcgaggagtg ttgcgaatag ttgatataga aacgtcgca                  2329
//
ID   Gypsy-8_CoFl-I repbase;    DNA;    INV; 7620 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-7620
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2276-2276 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           796..3033
FT                 /product="Gypsy-8_CoFl-I_1p"
FT                 /translation="MASLPQDQEDKLSDFCRSLIKEDLGIDFLENLELLTT
FT                 GSKAARSHRLYQWLTGRYVPENFEPAEDVNAAIERRVKARHLMVTQACEEF
FT                 AKANDDEIDVEAVHPLQIVRDSEEVNNLLKITTTAAMIDAQAETLDVPPAV
FT                 TNEDELLINTSSPIKNWDESGATQSEQALERENRWLQDRLLKANEKIANLT
FT                 RISSAITSNQSQPQRRNVTSPSDNVPAKRRETIFGEQAFANLAGPQATPFG
FT                 SGRYNVDLASASAHILAPPPPTTMGHVWPPNTVSWIQAICPSCAATSAYTS
FT                 SVSYPQRSGYSTAPPARTTQTQAFTTWPHTYTVSSSTRPTYPYLPPHTAAP
FT                 VDPTRSAWSGGSLPPSAERQSGLGRSYADPGCRDLGQIVRRWNVKFTGESH
FT                 DNFDSFLTRITECRTTSGLTEAELFQALPELMTGIAATWFRNECDQWISWA
FT                 DFVAAGQEWYGSGEEVQRRLISDAQMRTQYAGEPIRNFLTQIKNIVRRIQP
FT                 PWPVERQLDLFHRNMRPELQDRVRRDEVHSMAELLRRATEAERLLELRSAF
FT                 REPPPPEHFYLPEPAYKPKAKATEAKKQPRVAGISEAQPLSASAQEIAAIR
FT                 NEQAALRKAIEELPKKLANPPKIAGFDMMDEYSAEIVDELTKKKVRKPAID
FT                 ENMVKLLLDLLYVEKRRTAHAKYDEEPKQSSRSSNGPRKQERRSPSPPQPR
FT                 VRVVEVRARAHRGGTRTRGRAREIPAPGETSPLHRRHSHVATGVIT"
FT   CDS           3065..6580
FT                 /product="Gypsy-8_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="EAGKREEAVVSEGITPPPSPEPSQAAVTSEDARRWWL
FT                 QLEVAGYKLRALYDPGATHTVMRAVGLQIANSCRRQLRPTPGSAAMADGRP
FT                 SRTLGFVTLPFELGGVKRDVDVIVLPELDADCYVGANFINAFGTVHDPVDR
FT                 VLVLKGPGTKVPLEVAGVTTTGEVRLAAVGLDEISSTQQEELQTLLDRYVE
FT                 CEAPLGCTTWVEHEIEVTSSRPIKQKCYPVSDKIQEVIHAHVSEMLESGVI
FT                 EPSNSGWASPVVMIRKKDGKYRFCVDYRKVNAVTAPDAYPLPHMDTILRKL
FT                 RKARFISTLDLSSAYHQIPLAEKAKPVTAFTVPGKGLFQFRRLPFGLSNAP
FT                 ATFQRLIDSVIGPELEPYAYAYLDDIIIVTETFEEHLKWLEHVLKRVREAG
FT                 LTLNRGKSEFCQPEVRYLGVLVNRDGLRPDPAKLEPITAFPAPKNLKQLRR
FT                 FLGMVSWYRKFLPNYSTVVEPINRLLRKDQPFDWKDEQQRSFEQTKALLTS
FT                 SVVLQRPDPKSPYVVQTDASDSGLGAVLSQIVNGQERVLEFASRSMTPAER
FT                 NYSVTERECLAVLWATRKFRPYIEGTRFKVVTDHSSLRWLVSINNPTGRLS
FT                 RWAMELQSHGFEVEHRKGTQNCVPDALSRLYEDDESGAVAALMWEPPAGDP
FT                 WYQEMVQKVRDDPRGQPRWKIVGGYLYAYRPDSTVDETLGDLEAWKLVVPK
FT                 SQHDQVLQECHDTPSASHLGREKTFARVSRLYYWPGYYQDVARYVRSCLVC
FT                 QQTKVDQRLPPGLMGRRIVTAPWQVVAADMMGPLPKTTHGHEYILVIEDLF
FT                 TRWAEVVPLRRANGKAVVSALRERVICRHGTPEALLTDNGTEFRNKDVDGF
FT                 LESLGIRHMLTPXYHPQANPVERLNRTIKTMIRAFVEANHRSWDEKLPEHV
FT                 FAYNTERHASTGFSPAMLNSGREPYAPGTMRRQVDSTAQQRLEDEAIESWK
FT                 QRMERLPMLHVEANQRNDKAQANATRHYNAKHRDVVYAPGDQVWRENHVLS
FT                 SATQGVAAKLAPRYAGPFTVRKALGSNTYELESEEGTQSGPIHVRQLKPYV
FT                 SRPSATAGEDPPEDSGSEEEVASVPQPPLESGEQAKRDPPSANPPDVSEAA
FT                 GSARPKRGRPRKTTVASKPSAAAKTPAIEGRPRDDVRTCDPTTGQSPSDMR
FT                 WLRPRRMEKNLIL"
FT   CDS           6603..7397
FT                 /product="Gypsy-8_CoFl-I_3p"
FT                 /note="integrase."
FT                 /translation="LCFLLFPHFLFLLFSGGRIVTEMEATHLSLGGLIRRL
FT                 RHANXEXEXXELVEAFQRGLXLQAGATPRLAIEPXGEDXADPSPXXQPTSE
FT                 AXEAPQLLAXEAXAGSEDAWEGILERLDEARERVVASRGKALAAFTEVEAX
FT                 VRERGSTAATAEAERTALIGRKCFAAFNNTWVETRQLLAEEERRRAEEARR
FT                 LEERRKAEAEARQLRQEAERLLTRAHTVEAQATGNSLRPVRCYMCGLKGVK
FT                 RSKECPRRLEHYRFKRVNGGWVQE"
XX
SQ   Sequence 7620 BP; 1912 A; 2072 C; 2149 G; 1457 T; 30 other;
     ttggcgcccg acacacaaac ccacggatag gtatcgcgcg acgtcgtcta caaggtagac        60
     gaccttcact attattatct ctataataat agtaaagtag gagctgtagc agtagctaca       120
     gcaaaaacaa aacagatcgc gggtataacg cggagaacgc gtataacaca cacgagagac       180
     accggcagac tcgtataggt cgcgcgtgta aacaaagcag cggctttgtt tacgtgacaa       240
     ttttgagtcg ttgctgactt ccagcactca aaatttttgt tcacaagtgc gagcgagaaa       300
     gaaaataata tttcgagacg aaatattatt ttcaatagct aacgagcctt gcctgtgaaa       360
     tcggattttc acaggcggcg tacgctgaca cacagcgcat atacggcata gtatacaccg       420
     gtatacatat atacacggct gttggcttct cgcggcttgt agtgcgcgaa gcagtagtgt       480
     acgtgtgcag gtacactata cataactgta tttacaactg taccacacac atatacacac       540
     gcaaaagaga gagttgaggg agttgatctc cctgcagctg atagctttaa atataagcta       600
     taataaatta taaatttaat ttaaagcctc aaggcacaaa tttaggcagg aaagttgcgt       660
     ccagctaacg ccttggcgca aattccccct acccgtcagc tctctcctcc caagctaatc       720
     tctgcgctgc ggcacagtgc actcactgcc agtagttttt tttttgtgta gcgcgcactt       780
     agtattaaaa gaaccatggc atcgctacca caggatcaag aggataaact aagcgatttc       840
     tgcaggtcgt taataaaaga agacctagga atcgattttc tagaaaacct cgagctgcta       900
     acgactggca gtaaagcagc cagatcacac cgcctttacc agtggctgac ggggagatac       960
     gtccccgaga attttgaacc ggcggaagac gtcaacgcag ccattgagcg acgtgtaaag      1020
     gcgcgtcacc tcatggtcac acaggcctgc gaggagtttg caaaagcaaa cgatgacgaa      1080
     attgacgtcg aagccgtgca cccgctacaa atagtgcggg acagtgagga ggtgaataac      1140
     ctcctaaaaa tcacaacgac ggcggcaatg atagacgcgc aggctgaaac cctggatgtc      1200
     ccgccagcgg tgacgaatga agacgagctc ctcatcaata cgtcctcgcc tatcaagaac      1260
     tgggacgaaa gtggagcaac tcagtcagag caagctctcg aaagggagaa tagatggctg      1320
     caagataggc tattaaaagc caatgaaaag atcgcgaact taacgcgaat aagttcggct      1380
     atcacatcga accagagtca gccacaaagg agaaatgtaa catctccaag cgacaacgtg      1440
     ccggcgaaaa ggcgcgaaac tatwtttggc gaacaagcgt ttgcgaatct cgcaggtcca      1500
     caggccacac cattcggaag cggccgatac aacgttgact tagcgtcggc gtcggcacac      1560
     atcctagcgc caccgccacc cacgacaatg ggacacgtat ggccaccaaa tacagtcagc      1620
     tggatacaag cgatatgccc atcatgcgca gcaactagcg catacacgtc ttcggtaagc      1680
     tacccgcaaa ggagtgggta ctcgacwgcg ccacctgctc gcacaacgca gacgcaagcg      1740
     tttacgacgt ggccccacac atatacggtg agctcgtcaa cacgcccgac gtacccatac      1800
     ctacccccac atacggctgc accggttgac cccacacgtt cagcctggtc gggggggagt      1860
     ctcccgccct cggcggaaag acagtcgggg ttaggtaggt catacgccga ccccggatgc      1920
     cgtgacttag gacaaattgt ccgtcgatgg aacgtaaagt tcacggggga aagtcacgac      1980
     aactttgact ccttcctcac gcgcattacg gagtgccgca caacttcggg gcttacggaa      2040
     gcagagcttt tccaagctct gccagagctt atgactggca tcgcagcgac gtggtttcgc      2100
     aacgaatgcg accagtggat cagctgggct gattttgtag ccgcaggaca ggagtggtat      2160
     ggctcaggcg aagaagtgca acgccgcctg atctcggatg cgcaaatgcg tacccagtac      2220
     gctggtgagc ccatacgaaa tttcttaacg cagattaaga atatcgtgcg gcgaattcaa      2280
     cctccatggc cggtcgaacg tcagttggac ctattccaca ggaatatgcg tcctgagtta      2340
     caggatcgag tccgacgaga cgaggttcac agcatggcag agctgctgcg aagggccact      2400
     gaggctgaac gcctcttgga actcaggagt gcgttccgtg agccaccccc accggaacac      2460
     ttctacctgc cagaaccggc atacaagccc aaggctaagg ctactgaggc caagaaacag      2520
     cccagggttg cgggtataag cgaagcccaa cctttgagcg ctagcgcaca ggaaatagcg      2580
     gctattcgaa acgagcaagc tgcccttcga aaggcaattg aggagctgcc aaagaaactg      2640
     gctaatcctc caaaaattgc ggggttcgac atgatggatg agtactcggc agaaatagtc      2700
     gacgagttga ccaagaagaa ggtcagaaaa cctgcgatcg acgagaatat ggtgaagcta      2760
     ttgcttgatc ttctctacgt tgagaagcgt cggacagccc atgcgaagta cgacgaggag      2820
     ccgaaacaga gctcccgctc ttccaacggc ccccgaaaac aggagcgacg ctcaccctct      2880
     cctcctcaac ccagggtaag ggtcgtcgag gtgcgggctc gcgctcaccg aggcggaacc      2940
     cgaacgaggg gtcgggcacg agagatcccg gcacccggag agaccagtcc cctccacagg      3000
     aggcacagcc acgttgctac aggtgtaatc acctaggcca ctatgcgcgg gactgcccta      3060
     ataagaggca gggaaacgag aggaggcagt cgtaagcgag ggtattacgc cgcctccctc      3120
     tcccgaaccc tcacaggccg cggttacatc ggaggacgcg cgccggtggt ggctacagct      3180
     ggaagtagcc gggtacaagc tgcgagcgct atacgaccct ggcgctacgc acacggtcat      3240
     gcgagcggtc gggctccaga tagccaattc ctgtcgtcgg caactacgcc ccacgccagg      3300
     aagcgcggct atggccgacg ggcgaccgtc acgcacctta ggcttcgtca ccctaccctt      3360
     cgagctggga ggggtgaaac gggacgtaga cgtcatagtg ttgcccgagc tagacgctga      3420
     ctgctacgtc ggggctaact ttatcaacgc ttttgggacc gtccatgatc ctgttgatag      3480
     agtcctggtg ctgaaaggac caggtaccaa ggttcctcta gaggtagcgg gcgtgacgac      3540
     gaccggtgag gtccgactcg ctgccgtcgg gctggacgaa atctcgtcca cccaacaaga      3600
     ggaattgcag accctcctgg accgctacgt ggagtgtgaa gctcctttag gttgcactac      3660
     gtgggtcgag cacgagattg aggtcacgag ctcgcgaccc atcaagcaga agtgctaccc      3720
     ggtatcggat aagatccagg aggtaatcca tgcccacgtg agcgagatgc tcgaaagtgg      3780
     cgtgattgag ccatccaata gtggatgggc aagccctgtg gtcatgatac gcaagaagga      3840
     tggcaagtat cggttttgcg tcgattaccg gaaggtaaac gcggtaacag cacccgacgc      3900
     gtatccactg ccacatatgg ataccatcct gcgcaagctg aggaaagcac gttttatttc      3960
     gacccttgat ctcagcagcg cgtaccacca gataccgcta gccgagaagg ctaagccggt      4020
     gacagcattc accgtaccag gcaaggggct ctttcagttc cgacggctac cgtttggcct      4080
     gagtaatgcg ccggcgacgt tccagcggct aatcgacagc gtcattgggc cggagctcga      4140
     gccctatgcc tatgcctacc tcgatgacat aataattgtc acagagacat tcgaggagca      4200
     tctcaagtgg ctagagcatg tgctgaaacg cgtgcgcgaa gccggactca ccctcaaccg      4260
     aggaaagagt gagttctgtc aacccgaggt gagatacctt ggcgtcctcg taaaccgaga      4320
     tggtttacga ccggatccgg ctaaattgga accaattacg gcgtttccgg ctccgaagaa      4380
     tctgaaacaa cttaggcggt tcctaggcat ggtttcatgg taccggaagt tcctgccaaa      4440
     ctattcgacg gtagtagaac cgatcaacag gctgctgcgt aaggatcagc cgttcgactg      4500
     gaaagatgaa cagcaacgat ccttcgaaca gacaaaggct ttgctgacgt cctcggtagt      4560
     gttacaacga cccgacccca agagtccgta cgtggtgcaa acggacgcca gcgactccgg      4620
     actaggtgcc gtattatccc agatagtcaa cgggcaggaa agagtactgg agtttgcaag      4680
     ccgttcgatg actccggctg agcgcaatta tagtgtgaca gagcgagaat gcctcgcggt      4740
     cttatgggcg acgcgaaagt tccgccctta tatcgaaggg acacgcttta aggttgtgac      4800
     cgatcacagc agtctccggt ggttggttag tattaacaac ccgactggac gactgtcaag      4860
     atgggccatg gaacttcaaa gccatggctt cgaggttgaa caccggaaag ggacgcaaaa      4920
     ttgcgtaccc gatgccctgt cacgattgta tgaggatgat gagagtggcg ctgtggcagc      4980
     gctcatgtgg gaacccccgg ctggagatcc ttggtaccag gagatggtac agaaggtacg      5040
     ggacgaccca cggggtcaac cgcgatggaa aatcgtcggg ggatacctgt atgcatatcg      5100
     ccccgattcc acggttgatg aaactctcgg tgacctggaa gcctggaagc tggtggtacc      5160
     taaaagccag cacgaccaag tgcttcagga gtgtcatgat acaccatctg ccagccatct      5220
     tggccgcgag aagacgttcg cgcgtgtctc ccggttgtac tactggccgg gatactacca      5280
     ggatgttgcc cgttacgtgc ggagctgctt ggtttgccaa caaaccaagg tagatcagag      5340
     gctaccccca ggacttatgg ggcgtaggat cgtcaccgct ccatggcaag tagtggccgc      5400
     tgacatgatg ggccccctac caaagaccac gcacggccac gaatacatcc tcgtgatcga      5460
     ggatctattt acgaggtggg ccgaagtcgt accgttacgg cgagccaatg ggaaggctgt      5520
     tgtgagcgca ctgagagagc gcgtcatctg tcgacatggt accccggaag cgttgttgac      5580
     ggataatggc accgagttcc ggaacaaaga cgtcgatggg tttttggaga gtctgggcat      5640
     acggcacatg cttacgccgs cgtatcaccc gcaggcgaac ccggttgaac gtttgaaccg      5700
     taccatcaag accatgattc gagcttttgt cgaagccaat cataggtcat gggacgagaa      5760
     gctgcccgaa catgtgttcg cttacaacac agagaggcac gcttccacgg gcttctcccc      5820
     cgcgatgctt aacagcggta gagaaccgta cgccccaggt acgatgcgcc gacaggtcga      5880
     ttcgacggcc cagcaacgcc tagaggatga ggcaatagag agctggaagc agcgtatgga      5940
     gcgtctgccg atgctgcacg tagaagcaaa tcagcgaaac gataaggcac aggccaatgc      6000
     cactcggcat tacaatgcca agcatcgcga cgtggtctac gctcctggtg accaggtatg      6060
     gcgggagaac cacgtcttgt cctcggcaac gcaaggcgtg gcagcgaaat tggctccaag      6120
     gtacgccggc ccctttaccg tccggaaggc attgggttcc aacacgtacg agttggaatc      6180
     cgaggaaggc acgcaatcag gccccattca cgtgaggcag ctgaagcctt acgtgagcag      6240
     accctctgcg acggcgggag aagatcctcc tgaagattcg gggtccgaag aagaagtggc      6300
     tagcgttcct caaccaccgt tggaaagcgg cgaacaggcg aagcgcgacc cgccttcagc      6360
     gaatccaccc gatgtaagcg aggctgccgg atcagccagg ccaaagcgag gccgcccgcg      6420
     aaaaacgacc gtggcgtcga agccatccgc cgcggctaag acgcctgcga ttgaaggcag      6480
     accacgcgac gacgtccgaa catgcgaccc aacgacgggt caatcgccga gcgatatgcg      6540
     atggctgcgg ccccgtagaa tggaaaaaaa tttaattttg taagcgcctc catcccaact      6600
     aattgtgttt tcttcttttt ccccactttt tgtttctttt gttttctggg ggcagaattg      6660
     ttacagagat ggaggcaaca cacctcagcc tgggcggwct catmaggcgc ctmaggcacg      6720
     ccaacamcga gcakgaggss amcgagctgg tcgaggcstt tcaamggggc ctcaamctmc      6780
     aggcgggggc aactccgcgg ctggccatcg agcccckagg mgaggacsag gcsgacccat      6840
     cgccggmggw gcaaccaaca tcagaggccm cggaggckcc gcagctcctg gccmwcgagg      6900
     ccmcggcagg ctccgaggac gcctgggaag gtatcctgga gcggctcgac gaggcccggg      6960
     aacgtgtcgt ggcgagccgg gggaaggcgc tcgccgcgtt cacggaggts gaggcctwcg      7020
     tkagggagcg cggctccacg gccgcgaccg ccgaagccga gaggacggcc ctgatcggcc      7080
     gcaagtgctt tgcggccttc aataacacat gggtcgagac gcgccaactc ctcgcagagg      7140
     aagagcgccg tcgcgccgag gaggcccgac gccttgaaga gaggaggaag gcggaagccg      7200
     aggctcggca actccgccag gaggctgaac gccttctgac cagggcccac acagtggagg      7260
     cgcaagcgac gggtaattcc ctcmgacccg tccgctgcta tatgtgcggg ctaaaaggcg      7320
     tcaagcgctc caaggagtgc ccaaggcgct tggagcacta ccgcttcaag cgcgtaaacg      7380
     gaggctgggt ccaggagtga ctttagtcca ggaccagccg atccatggca catcaacatt      7440
     tttttttttt tttttttttc tttttctttt cttttctttt ctttaataaa ttgtacccca      7500
     ctttcttcta ccctccgtgt tttctttctc ctcgcccaca gacatcgtcc ttgtagcctt      7560
     cctgaatggc gcctaggtag tagagttgga gaccccggta tccaacgtct agcggggggg      7620
//
ID   Gypsy-8_CoFl-LTR repbase;    DNA;    INV; 889 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-889
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2302-2302 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 889 BP; 203 A; 241 C; 256 G; 183 T; 6 other;
     tgtaacggtg ccccaccgtt aggccacgtt agtaggctag ggcaggtaga gaaaggggga        60
     aaaagagttc aagggaccta agtgggaaag taggggtaag ggaaaagaga ggaaagccag       120
     gaaaggaagc aaggagagac agattagctt gggccagcga acgcgcgcga agcgagtttt       180
     tccgtgttgc cgtctcctgt tgctcttttc gttttttgtt cctgtgwgaa gtggtggtgc       240
     gaagtcaacg ccacggaaag tgttggtgcc gtgatccggc tctggaaccc gacgacaagg       300
     gcagaccaag tccaggtctg acgaccttga cctccasaca ctgccagtag ggacgcctac       360
     tggccccagc gtggkcacac cagctgccct agttcggcct acccaaggca gctgcgagag       420
     gcgacmctcc cgccscgcgt gagtacckgc caacaggcgg tctattgtaa agggcagcgg       480
     ccctagatta gcccgcgtag gtctgcccgg tctgcgtttt cgcgccgcga gctcgtcgag       540
     caatcgcgct cgacgtgcga gaatcacaca cacacacaca cacacacacc cgcgaatatt       600
     ttttgtaatt attttatatt ccctgaatat atattttaat ttaaaaatac ccgcgagtgc       660
     tacttccttt ctgtgtgtgc ccgatccccc cttgtgccgt gttatagtcg tcgcgagagg       720
     cgacgacgtt caaggtcgcc gcgataccgt gatcccgcag cggtgtctcg gcgaacgaga       780
     cccgcaaaat attttacagg gagtgtcacc gttgggtatc cgggcaacac aggcccggtc       840
     gaagtggaga gactccgcct cgtcaatccg cgttgtgcac cccgtaaca                   889
//
ID   Gypsy-8_CQ-I repbase;    DNA;    INV; 4444 BP.
XX
AC   AAWU01000706;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_CQ_;
KW   Gypsy-8_CQ-LTR; Gypsy-8_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4444
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 395-395 (2011).
XX
DR   GenBank; AAWU01000706; Positions   28397   23954.
XX
CC   Positions [3285-3743] - Integrase core
CC   'TTTTG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..4433
FT                 /product="Gypsy-8_CQ-I_1p"
FT                 /translation="MSPEFEANLLKILENQSKLLQELAAARITEAQPADNG
FT                 GGDGSLPANQQRPVHPTRPNQTEFVIESLSSGIREFCYDPEAGVTFEAWFA
FT                 KYEDLFAEDAQNLDDPAKVRLLLRNLNTVAHKKYLSYILPNKPKDVDFKET
FT                 VKTLKSIFGRHTSLFNSRYQCLQLQKNPSDDYFTYAGIVNEKCEEFQLDKI
FT                 DADQFKCLLFVCGLSSSRDADVRTSLLSKIESANPAAPMTLRSLAEECQRL
FT                 LNLKRDTAMLERTKPTVSAVKQPPRTKNAPPAQQPAETPNSPCWRCGEMHY
FT                 SKNCPFIQHECKSCKKVGHREGYCACFNSKSGRKKKKQTTAKAQGIYSVNQ
FT                 VSIADRRKFVTVELNGMPARLQLDSAADISVISADVYKQLGCPAGDPPSIN
FT                 VVNASGDDMGLELEIICTITLNDVVKQGRCFVSRTNDMNLFGAEWIELFGL
FT                 WDVPFNAVCNQVSMKTYPKSAELVNRFKEKYSTIFSESLGLCTKKKVSFTL
FT                 KPGAKPIFRPKRPVPYASVEKIEAELDRLQSLGIITPVSYSEWAAPIVAVR
FT                 KPNGKVRICADYSTGLNDALEPNHHPLPLPQDIFAKLADKKIFTQIDLSDA
FT                 YLQVDVDEESRKMLTINTHKGLFQFNRLSPGVKPAPGEFQHIVDSMIADLD
FT                 DTSCYLDDIIVASNSLDEHIEQLHRLFARIQEYGFHLKIEKSNFFMQQIKY
FT                 LGFIVDSDGIRPDPEKVKPIVNMPAPHDVPTLRSFLGAINYYGKFVKSMHE
FT                 LRHPLDALLKKDAKWNWSPACQRSFEEFKRILQSELLLTHYDPNQEMIVAA
FT                 DASQKGIGAVLLHRFSDGTIKAVCHASRTLTDAEKNYAQGEKEGLALVFAC
FT                 TKFHRMIFGRRFTLQTDHKPLLGIFGTKKGIPVHTANRLQRWALTLLLYDF
FT                 QIEFKATDIFGYADVLSRLIGEHTKPDEDYVIASLQLEKDVRSIQAESVAA
FT                 LPVTHQLILQETKRDKTLQAVLKQLRDGWSTKASSGEFLQFYKRRESLYEV
FT                 DGCVMFLDRIAIPEKLRAPVLKQLHAGHPGMQRMKSIARSYVYWPNIDAEI
FT                 EDYVRKCSRCAAAAKAPVKTTLSSWPIPVQPWTRLHLDYAGPIQGKFFLVI
FT                 VDAHSKWPEIFAVNNSTASTTVSKLRECFARFGCPVSVVTDNGTQFDSELF
FT                 AKFCRELGIEHIKTPPFHPQSNGQAERFVDTLKRALLKIGGEDIDAALQTF
FT                 LQTYRYTPNAVLPDNKSPAEALLGRKVRTVFDLMTKPTPDMPLINQRQNEQ
FT                 FNRKHGAKKRTFAAGEEVYAEIHIRNEKYWAKGVVIERKGQVVYNVLLDDP
FT                 RRRGLIRSHANQLRSRAAADEPVVQAETDLPLNVLLEEFGVNRTGVETHAD
FT                 PVGGELEEMPLEQTTVAEDLLSVPEEVMAVPGPSRPPNPVPVEAKAVTGPS
FT                 RPRYVCVPRPNVDVPAPRPIVRKRGIEPVSPGRGPSGRKRRLPSHFHHYDL
FT                 F"
XX
SQ   Sequence 4444 BP; 1148 A; 1215 C; 1175 G; 906 T; 0 other;
     attggcgacg agaaaataca agcctacgca agaagatgtc tccggagttt gaagcgaacc        60
     ttttgaaaat tttggagaac cagtcaaagc ttcttcaaga acttgcggct gctcgaatta       120
     cggaagctca accggcggac aacggcggtg gggacggtag tttgccagca aaccagcaga       180
     gaccggtcca tcctacccgt ccgaaccaga ccgagttcgt aatcgagtcc ctgtcaagcg       240
     ggatccggga attttgctac gacccggaag caggagtcac gtttgaagcc tggttcgcca       300
     aatacgaaga tcttttcgcg gaggacgctc aaaatctgga cgacccggca aaagtcagac       360
     tcttgctacg caacctcaac accgtggctc acaagaagta tctgagctac attttaccaa       420
     acaaaccgaa agatgtcgat ttcaaagaaa ccgtcaagac cctgaagtcc atcttcggcc       480
     gtcacacgtc gctcttcaat tcacggtacc agtgcctgca gctacagaag aatccgtccg       540
     acgattactt cacgtacgct ggcatcgtga acgagaagtg cgaggagttc cagctggaca       600
     agatcgacgc ggaccagttc aagtgcctgt tgttcgtgtg cggcctgagt tcatcaagag       660
     atgcggacgt tcgtacgtca ctgctgtcca agatcgagag tgccaatcct gctgcgccga       720
     tgaccctgcg ttcgttggcc gaggaatgtc agcgactctt aaatctgaag cgggacaccg       780
     ccatgctcga gaggaccaag cccaccgtat cagctgtcaa acagccacct aggaccaaga       840
     acgccccgcc tgctcagcag ccagccgaaa ctccgaactc accgtgttgg agatgtgggg       900
     aaatgcacta ttcgaagaat tgcccattca tccaacacga gtgcaagtcc tgcaagaagg       960
     tcggacatcg tgaaggatac tgcgcctgct tcaattcaaa atccggacgg aagaaaaaga      1020
     agcagactac agccaaggcg caggggatct actccgtcaa ccaggtcagc attgcagaca      1080
     gaaggaagtt cgtcacggtg gagctgaacg gaatgccagc acgactgcag ttggatagtg      1140
     ccgcggacat cagcgtgatc tcagcggacg tctacaagca actcggttgt ccagccggcg      1200
     atccgccgtc catcaacgtg gtcaacgctt ctggagatga catgggactg gagttggaga      1260
     tcatctgtac cataaccctc aacgacgttg tcaagcaagg gaggtgcttc gtatctcgga      1320
     ctaacgatat gaacctgttt ggagctgaat ggatcgagct tttcggactg tgggacgtac      1380
     cgttcaacgc ggtgtgcaac caggtctcca tgaaaacgta tcccaagtcg gcagaactgg      1440
     tcaaccgttt caaggagaag tacagcacca tcttcagcga gagtctggga ctctgcacca      1500
     agaagaaagt gtcgttcacc ctcaagcctg gtgccaagcc gatttttcgc ccgaagcgac      1560
     ccgttccgta cgcatcggtt gagaaaattg aagctgaact ggaccgtctt caaagtcttg      1620
     ggatcatcac accagtctcg tactcggagt gggccgctcc gatcgtggct gtacgcaagc      1680
     ccaacggcaa ggtgaggatc tgtgcagact attccactgg actcaacgac gcgctggagc      1740
     cgaatcacca tccgctaccc ctgcctcaag atatcttcgc caagctggcc gacaagaaga      1800
     ttttcaccca aatcgatctg tcggacgcct acctgcaagt cgatgtcgat gaggagtcgc      1860
     ggaagatgct gacaattaac acgcacaagg gtctgttcca gttcaatcgc ctgtcgccgg      1920
     gagtcaagcc tgcacctggc gagttccaac acatcgtgga cagcatgatt gcggatctgg      1980
     acgatacgag ctgttatctg gacgacatca tcgtggcgag caactctctg gacgagcaca      2040
     tcgagcagct tcatcgcctg ttcgcccgca tccaggagta tgggttccat ttgaagatcg      2100
     agaagagcaa tttcttcatg cagcagatca agtacctggg cttcatcgtc gattccgatg      2160
     gaattcgacc tgatccagag aaagtcaagc cgatcgtcaa catgcctgcc ccacacgacg      2220
     tcccgacact gcgctcattc cttggtgcga tcaattatta cggcaagttc gtcaagtcca      2280
     tgcacgagct tcgccatccg ttggacgctc tgctcaagaa agatgccaag tggaactgga      2340
     gtcctgcctg tcagcggtcg ttcgaggagt tcaagcggat tctacaatca gagttgctgt      2400
     tgacccacta cgacccaaac caggagatga tagttgccgc tgacgcctcg cagaaaggaa      2460
     ttggtgcggt tcttctacac cgtttctctg acggtacgat caaagcagtg tgccatgctt      2520
     cccggacact cacggacgct gagaagaact atgcccaagg cgagaaagag ggccttgccc      2580
     tggtcttcgc ctgcaccaag tttcatcgga tgattttcgg cagaagattc acgctacaaa      2640
     cggatcacaa gccgctgctg ggaatttttg gaacgaaaaa gggcattcca gttcacacgg      2700
     cgaatcgact ccagcgatgg gcactcacac tgctgctgta cgacttccag atcgagttca      2760
     aggcaacgga catctttggg tacgctgatg ttctgtcacg tttgatcggc gagcacacca      2820
     agccggacga ggactacgtc atcgccagcc tgcagctcga gaaagacgtc cgaagcatcc      2880
     aggcggaatc cgtggcagct ctaccagtta ctcatcagct gatcctgcaa gagacgaagc      2940
     gcgacaagac actccaggcc gtactcaagc aacttcgtga cggatggtca accaaagcat      3000
     catctggaga gttcctgcag ttctacaaac gacgggaatc gctatacgaa gtggacggct      3060
     gcgtgatgtt cttggaccga atcgccattc ctgagaagtt acgagctcct gtcctgaagc      3120
     agttgcacgc tggtcacccg ggaatgcagc ggatgaagtc gatcgcgaga agctacgtct      3180
     actggccaaa catcgacgct gagattgaag actacgtgcg gaaatgttcg cgctgtgctg      3240
     ctgcggcaaa agctccagtc aagacaactc tttcctcgtg gccgattcca gttcaaccat      3300
     ggacgcgctt gcacctggac tatgctggac ccatccaagg aaagttcttt ctggtgatcg      3360
     tcgacgcaca ctcgaaatgg ccagagatct tcgcagtcaa caactcgacg gcttcaacca      3420
     ctgtcagcaa gctacgagag tgtttcgcaa gattcggatg tccagtctcc gtggtcacgg      3480
     acaacggaac gcagttcgac tccgagcttt tcgccaagtt ctgccgcgag cttggtatcg      3540
     agcacatcaa gacaccacca ttccacccgc agtctaacgg acaagcagag aggtttgtcg      3600
     acacactgaa gcgagctctt ttgaagattg gcggtgagga cattgatgct gctctacaga      3660
     ctttcctgca aacctatcgc tacacaccaa atgcggtttt acccgacaac aagtcacctg      3720
     ctgaagcttt gttggggagg aaagtgcgca ccgtcttcga cctgatgacg aaaccaacac      3780
     ctgacatgcc gctcatcaac caacgccaga acgaacagtt caatcgcaaa catggagcca      3840
     agaaacgcac gtttgcggca ggtgaggaag tttatgctga aatccacatc cgcaacgaaa      3900
     agtattgggc caaaggtgtg gtgatcgagc gcaaaggaca ggtggtgtac aacgtgctac      3960
     tggacgatcc acgacgtcga ggattgattc ggtcgcatgc aaaccaactg cgatcgcgag      4020
     cagcagctga cgaaccagta gttcaagccg agaccgacct accactaaac gtgctgttgg      4080
     aagagtttgg cgtgaaccgg actggagttg aaacacatgc tgatcctgtt ggaggggagc      4140
     ttgaagagat gccgctcgag cagacaacag tcgctgagga tctactttcg gttcctgagg      4200
     aggtgatggc cgttccagga ccgtcacgtc caccaaaccc ggtacctgtg gaagcgaaag      4260
     ctgttacagg gccatccaga ccgcgatacg tttgcgttcc aagaccaaac gtagacgtgc      4320
     ctgctccaag gccgatcgtg cggaagagag gaattgaacc tgtaagccca ggacgaggac      4380
     catccggcag aaaacgacgc cttccatcgc acttccatca ctacgatctc ttctaggggg      4440
     gaga                                                                   4444
//
ID   Gypsy-8_CQ-LTR repbase;    DNA;    INV; 117 BP.
XX
AC   AAWU01000706;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_CQ_;
KW   Gypsy-8_CQ-I; Gypsy-8_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-117
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 396-396 (2011).
XX
DR   GenBank; AAWU01000706; Positions   23953   23837.
XX
SQ   Sequence 117 BP; 37 A; 23 C; 23 G; 34 T; 0 other;
     tgctgagtat gccatgaatt gctaaaattt gggtataaaa ggcggctgtc ggcgattaat        60
     aaatcattct agtttggacc accaacctga acagttgtac ttattccaaa cctaaca          117
//
ID   Gypsy-8_DAn-I repbase;    DNA;    INV; 5575 BP.
XX
AC   AAPP01018781;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DAn_;
KW   Gypsy-8_DAn-LTR; Gypsy-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5575
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018781; Positions   54427   48853.
XX
CC   Positions [4674-5150] - Integrase core
CC   'AATT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           736..2253
FT                 /product="Gypsy-8_DAn-I_1p"
FT                 /translation="MSVRRSPENSSRLAIESVQCSICNDTNAEIDFVETPC
FT                 QHRFHRTCVTSWLLQNETCPNCRQPCLSSQLNDSTRRAQDTTLEVPRVQNG
FT                 SNPNSRTGAVPRSRPNTRPTTRSTATISNNRPSTSSQPQRSPRAGGSQRTT
FT                 SISEGRIQELITNALEAYQTQLSSTLSEQISLAMQNLNIPTSQRQSLEWDV
FT                 ELPPADPLQSQPFDSHLSGNHNISANRSLENRRENHPIRPDQISSLIVHWK
FT                 LQFSGSPKDIFVEDFIYRVNTLTRRSLNGNFDLLYEYANLLFVGPALTFFW
FT                 RCHRSSEEMNWRLLCSRLRERYKDQRSDQDIRAVMRRRKQGNNECFDDFLD
FT                 SILAIADALSEPISDSELVQTIRNNLRSDLGHDLLHIETPTIAALRRHCHL
FT                 HEEFFNNLRAKTSSRYPPIRRNINEISLDEEIEESLQGNQPQISAIRNENR
FT                 TKCWNCDTLGHRFKDCPKPHRVFCYGCGAINVYKPTCPNCSQKSGNFQADN
FT                 RANPRTDARL"
FT   CDS           2748..5516
FT                 /product="Gypsy-8_DAn-I_2p"
FT                 /translation="MEFLIVPSITLDVICGIDFWERFGISVSLESHVSELN
FT                 FEEDSSKLKLSPVDQSRLKGVIDFFPSSDRDGLGITNLIEHSIDTGNAKPI
FT                 KQRHYPLSPAREKLLCAEIDRMIKLGVIEEASASSWSSPIVLIVKPDKVRF
FT                 CLDSRKVNEVTIKDSYPIPNLEGLLSRLPPVHCISKIDLKDAFWQINLDPQ
FT                 SRPKTAFTVPNRPLYQFRRMPFGLCNAPQTMCRLIDQVIPYQMKSHVFVYL
FT                 DDLLIMSPSFDEHLKHLSEVATRLRHAGLTINIKKSQFCLRKVEYLGYVVG
FT                 EGTLQVNPEKVSAVSQFPIPKTQQQLRRFLGMGGWYRRFISQYSTITAPLT
FT                 DLLRGKIFSWNEDAQKAFDAQKPFLIHPDYDKPFIIQCDASMCGVGGVLAQ
FT                 CDELGNERPIAYMSQKLNGAQRNYTVTELECLAVVFAIKKFRMYVEGHKFT
FT                 VVTDHSALRWLMTNTDLSGRLARWAIQLQGFVFKIEHRKGSQNVVPDALSR
FT                 SFEEPTELLAIEVDVFPEIDLQSDAFQSEEYIQLRDRVQKFSVPGFRVMDI
FT                 YIYYRAGFASGNQEVDDANYKLLVPRELRASVIQSAHDQPTSSHGGVAKCL
FT                 ERLRRNFYWPNMVIDVRNYIAHCDICKTCKHPTQRLRPPMGCQATSERPFQ
FT                 RLYIDFIGPLPRTRNGNIGILILLDHFSKFTWLRPVKKFTSKVVMDYLEEE
FT                 IFVCFGTPEVLVSDNGTQFKSQDFAAFISKHGIQHIFTGAYSPQSNAAERV
FT                 NRSINAALRSYIRSDQRLWDLYIGKINSALRNNIHQSIGESPYYVIFGQHM
FT                 LTHGKDYKLLRNIHMLSEGSAKVPRADEFPKIRADIAKRLIKAYEKNRNNY
FT                 DLRARPRTFEVGQEVIKRNFVLSNQAMHVNAKLAPVGIKARIKEKRGQSLY
FT                 LLEDYNGKELGVFHAKDIW"
XX
SQ   Sequence 5575 BP; 1759 A; 1218 C; 1151 G; 1447 T; 0 other;
     gaataaaatg gcgcccaacg tggggctagc aaaacatcta gctaagcaac aaacaaaaca        60
     ccaaatcgca gcccctgctc tcacgagcta acctccaacc tatcctaaca gtcagccttc       120
     caaccaagtt tctttagttt cagaaaaccc ttcttttaat tccactagga ctgctgtgtt       180
     ttgggaaatc ctcagaacca gaccagggaa caaattaagg attaggaaga tgtttctctt       240
     gaaatatccc tttgtttata catgtattta aggaacaaga agtcgagact gtattggctg       300
     gaatgtttca gcaataactc cttcttagcc cttgatcaac tcatcaaacc ataaatattc       360
     ataaattcga ggattgtaat tgttggaaaa ttcagcaata cctcattttt gaatattttg       420
     gcttcaattt tggcctctat tattgtcaaa agttgcctaa aagaaattga gatttatatt       480
     ggttggaata ttcagcagta tactctttca tttagcgcaa tgaacacatc agtttgtttt       540
     agattcaata cagatatgaa aatacagaca gaaacccttg taatgtacta aatgaaatcg       600
     atacagcaaa ggataagacc caagatatcc cataaaaatt caggtttccg aaattaaatt       660
     gtggaaataa tagacttaat atctatcaaa tttcgttata ttttgttgtt gttgttgtat       720
     gtcgaaaacg aaacaatgtc agttcggcgt agtcccgaaa atagttcaag attggccatt       780
     gagtcggtgc aatgctccat atgcaatgat accaacgccg agatagactt tgtcgaaacc       840
     ccctgtcaac accgctttca tcgaacgtgc gtaacttcct ggttactgca aaatgaaacg       900
     tgtccaaatt gtcgacaacc atgcttatcg tcgcagctca atgatagcac gcgaagagcg       960
     caagacacta ccctagaagt tccgagagtt caaaacggat ccaatccaaa ctcacgaaca      1020
     ggcgccgttc ctagaagtcg tccgaatacc agaccgacaa caaggtcaac cgcaaccata      1080
     tccaataacc gtccgagcac cagctcgcaa cctcagcgtt caccacgtgc tggaggttcg      1140
     caaagaacga ctagcatttc agaagggaga attcaggaac tcataacgaa tgcattagaa      1200
     gcataccaaa cccaactctc ttcaacattg tcagaacaaa tcagtctggc aatgcaaaac      1260
     cttaacattc ctacttctca aagacaatca cttgagtggg atgtggaatt accgccagcc      1320
     gacccattac aaagccagcc ttttgatagt catttgtcag gtaaccataa catctctgct      1380
     aatcgttcac tagagaatcg aagagagaat caccctatcc gacctgacca aatttcaagc      1440
     ttaattgttc actggaagct acagttttcc ggctcaccaa aagatatttt cgtagaggat      1500
     tttatataca gagtgaatac tttaacacgt cgctcgttaa acggaaactt tgatcttttg      1560
     tatgagtacg cgaatttgtt gtttgtaggc ccagctttaa ccttcttttg gcgatgccac      1620
     cgaagttcag aagagatgaa ttggcgatta ctttgttctc ggttgaggga acgatataaa      1680
     gaccaacgat cagatcagga cattcgagcc gtgatgcgta gaaggaaaca gggaaataat      1740
     gaatgtttcg acgattttct tgactccatc ctagccatcg cagatgcgct atctgagccc      1800
     atttcagact ctgagttggt tcaaacaatt agaaacaatc ttagatccga cctaggacat      1860
     gaccttctac atatcgaaac cccaactata gctgctttac gcaggcactg tcaccttcat      1920
     gaagagttct ttaacaatct aagagctaaa actagttcac gttacccacc gataaggcgg      1980
     aacataaatg agatttcttt agacgaagaa attgaagaat ccttgcaagg aaaccaacca      2040
     cagatttcgg cgattcgaaa tgagaatcga acgaaatgct ggaattgtga cacgttaggt      2100
     catcgattca aagattgccc taagcctcat cgagtatttt gctacgggtg tggcgcgata      2160
     aatgtttata agcccacttg cccaaactgc tcccaaaaat cgggaaactt ccaggcggac      2220
     aaccgtgcca atccgaggac ggatgcccga ttgtagactc ggacgaggag aagaataaat      2280
     caaatgaaag cgtagtaatc cctgaccacc caaaccagac accggacaaa tcccaggacc      2340
     gacatagcaa gccatatcac gttcggttaa gagaatataa agaaatcagg agtagaatat      2400
     ttacaaacga tagttgtagg aaaaataaaa gtcgctcagc agtacgacaa cgagattttt      2460
     ggaaatcaaa acatggttac catagttgcg taatatcagc aataagtaaa gtaaacaatg      2520
     acatccgtcc gttcgcaaat ttagtcgtgt tcgatcaatc gtatttagcg ttgctagata      2580
     gtggtgcgaa taagagcgta gtcggcggat cgttagctaa aagtattgtt tcaggaaaat      2640
     acaaatacgt taaggctcac ggccacgtac gaaccgcaga tggaacaaaa caatccaccc      2700
     tcggcacgat cacaattaag attagctata accacattga ggcagaaatg gagttcttaa      2760
     tagtaccatc gatcacactc gatgttattt gcggaataga cttttgggaa agattcggaa      2820
     tttctgtttc cttggaaagc cacgtaagcg aattaaactt tgaggaggat tcttccaaac      2880
     ttaagttatc acctgtggat caatccagac tcaaaggtgt aatagatttc tttccgtcat      2940
     ctgacagaga tggtcttggc attacgaact taatcgaaca ttcgattgat accggcaatg      3000
     ccaaaccaat caaacaaaga cattacccat tatcaccagc acgtgaaaag cttctgtgcg      3060
     ctgagatcga caggatgatt aaattaggag taattgaaga agcctccgca tcatcatggt      3120
     catctccgat tgtactaata gtcaagcccg ataaagtcag gttttgtctc gattctagga      3180
     aggtaaacga ggtcacgata aaagactcat acccgattcc gaatctagaa ggattgttaa      3240
     gccgtcttcc tccagttcac tgcatttcaa aaattgattt gaaagatgcc ttttggcaaa      3300
     tcaatttaga ccctcagtcc cgacctaaaa cggcattcac cgtcccgaat aggccattat      3360
     atcaatttag acgtatgcct ttcggactgt gcaacgctcc tcagacaatg tgtcgtttga      3420
     tagaccaagt aataccatat caaatgaaat ctcacgtgtt cgtctatttg gacgacctcc      3480
     ttatcatgtc accaagcttc gacgagcatt taaagcatct atcagaagtg gcaacgcgat      3540
     tacgccacgc cggccttaca atcaacatta agaagagcca attttgcctt cgaaaagtag      3600
     aatacctagg ttatgtagtg ggtgaaggaa cactgcaagt gaacccagaa aaggtcagtg      3660
     cggtatctca gtttcctatc cccaaaaccc aacagcaact gagacgtttt cttggtatgg      3720
     gcggttggta ccgtcgattc atatcccagt attcaacaat aacagcccca cttactgatt      3780
     tacttcgcgg aaagatcttt agctggaacg aggacgctca gaaagctttt gacgctcaga      3840
     agccttttct aattcatcct gattacgaca agccatttat aatccaatgt gatgcgtcaa      3900
     tgtgcggagt tggaggagtg ctagcacaat gtgatgaatt aggcaacgaa cgtcccatcg      3960
     catacatgtc ccaaaaatta aatggagctc aacgtaacta tacagttacc gagttagagt      4020
     gtctagccgt tgtgtttgcc atcaagaagt ttcgcatgta tgtagaaggg cataagttta      4080
     cagttgtcac cgatcattca gccctgcgat ggctgatgac caatactgat ctcagcggga      4140
     gacttgcccg gtgggcgatt cagctacaag gctttgtgtt taaaatcgaa catcgcaagg      4200
     gaagtcaaaa cgtcgtaccg gacgccctat cacgatcttt cgaggagcca accgagctac      4260
     tggctataga agtagacgta tttccagaga ttgacttgca gtcagatgca ttccaatcgg      4320
     aggagtatat tcagctaaga gaccgtgtcc aaaaattcag tgtacctgga tttcgagtca      4380
     tggatatcta tatttactat agagcaggct tcgctagcgg aaatcaagaa gttgacgatg      4440
     caaattacaa acttctagtt ccacgcgaat tgagagcaag cgtaattcag tctgcacatg      4500
     accaaccaac atcgtcgcat ggcggggtgg caaaatgtct cgagcgactt cgaagaaact      4560
     tctattggcc aaatatggtg atagatgtgc gcaattatat agcacattgc gatatttgca      4620
     aaacttgtaa acatccgacg caacgtcttc gaccgccgat gggttgtcaa gccacaagtg      4680
     aaagaccatt tcagcggtta tatatcgatt ttatcggtcc attgccaaga acccggaacg      4740
     gaaatatagg catattaatt ctcttagatc atttctccaa atttacttgg ctaaggccgg      4800
     tcaaaaagtt cacttctaag gtagtgatgg attacttaga agaggagatt tttgtatgtt      4860
     ttggaacgcc ggaggttttg gttagcgata atggcactca gtttaaaagc caggacttcg      4920
     cagcctttat atccaagcat ggaatccaac atatcttcac tggtgcttac tccccacagt      4980
     ccaacgcggc ggagcgggtc aatcggtcga tcaatgcagc cttacgatca tatattcggt      5040
     cagaccaacg gttgtgggac ttgtatatag gaaaaattaa ttctgccttg agaaataata      5100
     ttcaccaatc aattggagaa tctccttact atgtaatctt tggccagcac atgctaacgc      5160
     atggaaaaga ttataagttg ctaagaaaca tccatatgtt gtcagaagga tccgcaaagg      5220
     ttcctagagc agacgaattc ccgaaaatcc gagcggatat cgctaagaga ttgattaaag      5280
     catatgagaa gaaccgaaat aactacgact tgcgcgctcg acctcgaact ttcgaagtgg      5340
     gtcaggaagt cataaagagg aatttcgttc tcagcaacca ggctatgcat gttaacgcaa      5400
     aactagcacc tgtaggaatc aaggccagaa taaaagagaa gcgaggccag tcgttatatt      5460
     tgctcgaaga ctacaatgga aaggaattag gagtttttca tgccaaagac atttggtgag      5520
     gtaccctttt ccagctttca tctcctttct atgagcaggt cgataaaacc tgtgg           5575
//
ID   Gypsy-8_DAn-LTR repbase;    DNA;    INV; 1768 BP.
XX
AC   AAPP01018781;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DAn_;
KW   Gypsy-8_DAn-LTR; Gypsy-8_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1768
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018781; Positions   48852   47085.
XX
SQ   Sequence 1768 BP; 531 A; 372 C; 373 G; 492 T; 0 other;
     tgtgagggta cgaataaaat ttaaaacaag acaaaataaa ttctataaaa aaaacgtaaa        60
     caaacttatt cgatacgata gtcgattagc cttattcgat ataataagtc gataacagat       120
     cgcggtaaca gcgcctgtta agctgttaag gcgaactatc tggcaactct gcaaactgac       180
     aagctaccct tcactaaccc aggaaaagtt cttttgcgat ccagaatcaa aagtgaacgg       240
     ttggagttat agcaattaaa aacccaagcc aaatccacat ccaaatccca cgtgggaaaa       300
     gttagtaccc aaagtggcac tcaagtcttc caccaagtgc agctgaatat tgaccgtgca       360
     cgtgcgcagc cgttggcatc agcacgcgtg tctgtgtatg tgtgtgtgtg tgtctgaaac       420
     attcaggtga gcaggcggat aagttgccta ttaggttatt aatagaagtg ttttaggtca       480
     tcctcaaaac cccgtaatag tgggcgtaga gctacaccgg agcctacgac aaacaacgct       540
     tcccgtcgcg acccagaagt ccacggcgga gccaccgcgt gccttgctgg gtagacgttc       600
     agaaaccgct ttcctcgatc agctcctaaa cgtgcgcgaa tccggaccag acccaagcca       660
     cgataggcga ggagttccct ggtagccgga gacgtgtgcg tgattggggc agcataggat       720
     caggagcggt gctgaaactt ttcgaggaac gtgtgtgagg acataacctc actttgtgaa       780
     gcagcacctc atgttcggca acatgacctc ggccatgtaa agggcagttc ggcgatcgtt       840
     gcagcaatca tttagaggcg actaaataac aacagcaaca acaaggagac atgcgcaata       900
     aattgtgcca gtagcagcgg gtgttttaag tagcatttaa ttaaatttcc tttttgtaaa       960
     ttctattgga tcgaaccaat actcatactc ttttcctgta gagcaaaata gttggcaaca      1020
     tatacatcga atcttcgtaa tttaatttaa atttcatcaa agcaccctgc gctccagtct      1080
     acaggcctgc ggacttcgag ggatttggtt tcgtgagtac aatatagact cgatcatgta      1140
     ttattgccgc tcaaagaaag cgtatgaata tttaggtatc gtaatgcata aaatctactt      1200
     taactattat ttgacccagc tacatatata tatatattcc tttatctttt gaatatttaa      1260
     ctttttgtat tacatccaaa aaaattccat tattattatt attaaatcca ttattatttg      1320
     ttaagtaacc ggtattacaa ccgtttatag gaattaggct aagcacaatc tagaaagaag      1380
     agcaatcatg ttttataatg aagttgatta attgatattg aaatgaagta aaattatagt      1440
     ttaatgggca cctgagctga aagatttcat tttaaatggg taagggcaac aatacttcgt      1500
     tgtgaagttg ttaagtcttt acaggtaggg cgggccaagc ggaagaacct caccacctta      1560
     gttcttcgat agcacggttt cctgtcttga attcatatcc ttccaactga ctggatctcc      1620
     tcccaaactc tgtctacaat atttttattg tgtggcggtg gtactgatta ggaagtaacc      1680
     gacccctatg tctcttccct gagctaggcc gttcctgtag gcagagtatg caaccaatcg      1740
     gtatccaagt tcctccgtgt tcgtcaca                                         1768
//
ID   Gypsy-8_DAzt-I repbase;    DNA;    INV; 6986 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_DAzt-I;
KW   Gypsy-8_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-6986
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 762-762 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           999..2354
FT                 /product="Gypsy-8_DAzt-I_1p"
FT                 /translation="MSIDNNINELEELFEELSLDFQIGPEEVIEIMNAEQI
FT                 EAAISAAVTAALAAQRTNFEERLQAVTDQLQAIRVQAPEAQAYEPITLDRN
FT                 IRCDEALDAVKTLPEFHGAQEQYVSWRQAAKAAYKLYDGFVGSSKHYQAVL
FT                 IIRNKIRGSADSLLSSFNTVLNFEAIINRLDFTYADKRPLHLLEQELATLR
FT                 QGGMPITQFYEEVEKKLTLLTNKTIMSQDAAQAQYINEKYRADALRVFISG
FT                 LRRGVTDTLFAAQPKDLPSALAMAQEIEANHDRHDFAANYARVLENKGQNR
FT                 NRYKQGGQNEPDHFKRQSKNPFYTNNQGTHQLNGHRGQDKVEMMDVDPSSS
FT                 KLRQPTNFQKQLGTNLGSPAGTNRNIGHQQGAFKRPAGSQRLSDQRRQRVN
FT                 HIAQEDLDQYEQKYDQLASEAVEEIDEENNAGYESDTVNFLGENPCSRSSS
FT                 EQLRGEQ"
FT   CDS           2297..5386
FT                 /product="Gypsy-8_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="FFRGESLLPFVKRTVAGRTVNILIDTGAAKNYIKPLK
FT                 ELQGIVPVEAPFIVKSLHGFNKVNQKCFLTMFGIRSPFFILPELSTFDGII
FT                 GLDTLTKAGVNINLETKKLHFGHESEKILFHKCPSVNFTKVDDIEVPPAVR
FT                 EEFLKMMSNRIKAFADPTEMLPFNTAIVATIRTEDEEPIYSKMYPFPVGAT
FT                 DFVNDEVKDLLRNKIIRPSRSPYNNPIWVVGKKGTDSSGSSKRRLVIDFRK
FT                 LNSKTIPDKYPMPCISMILSNLGKARYFTTLDLKSGYHQITLAERDREKTS
FT                 FSVNGGKYEFCRLPFGLKNASSIFQRAIDDVLREHIGKICYVYVDDVIVFS
FT                 RSESDHVKDIDTVLSSLHDANMRVSKEKSQFFKGQVEFLGFVVSTEGTRTS
FT                 PDKVKAIQEFKQPSTLFAVRSFLGLASYYRCFIKDFAQIARPISSILKGEN
FT                 GKISKQRSKSVPIQFDEVQKQAFDKLRNILSSEDVILHYPDFNQPFDLTTD
FT                 ASASGIGAVLSQGNRPITMISRTLKDRELNYATNERELLAIVWALDSLRHY
FT                 LYGKSDINIYTDHQPLIFAVSDRNPNSKIKRWKARIDECGARVLYKPGRDN
FT                 HVADALSRQDINALESQSRSDAATIHSEASLTYVIEATDKPVNCFRNQIIL
FT                 EEADTPSKQLHILFAEKTRHKIDFVSRDTLLASIKEVVKPGVVNAIYCTLP
FT                 ILAFVQNELVKAFPDTKFRYCKTLVTDITNDGERREIVTTEHNRAHRAAQE
FT                 NVKQVLRDYYFPKMERIASEVVSNCRICQKAKYDRHPRRQELGVTPIPARV
FT                 GELIHIDIFSTAGKHFLTAIDKFSKFAITQQVASRTITDLKIPILQLVNIF
FT                 PAIKTIYCDNEPAFNSETIRSLLKNQFNVDVANAPPLHSTSNGQVERFHST
FT                 LLEIARCLKLQRQVDDTVELVILATIEYNRTIHSVTNKTPIDVVHANCDLG
FT                 EEIMLKLVKAQQEQLGRNNPNRQNRTFDVGEQVLVKTNRRLGNKLTPLCTE
FT                 QRVEADLGTTVLIKGRVVHKDNLR"
FT   CDS           5728..6984
FT                 /product="Gypsy-8_DAzt-I_3p"
FT                 /note="env."
FT                 /translation="MDIFPQTHMRKILETDTKHLLTLTAALGVHHRHARSL
FT                 NILGSALKVIAGTPDFDDLQQTRQVEYDLIKANNRQITINSRTQTQINALT
FT                 EAVNKLLKVNRNEEINNSYLYENLLTRNRILTLELQNIMIATTLAKINIVN
FT                 PAIIDSDDLEAILRKGSTDISVTQLLGAANVRALANKELIIFVIEVPRPKF
FT                 ICKKITIFPVAHKGIAIRLPEPIIAECGNKVIAVSSCMGPPSLAFCKEAPA
FT                 NSCAQQLHFGAVAHCGTQPNNQPPILEVDEGIVIINDAIATVAADDGPERS
FT                 IAGTYLVTFDRVALINGTEYTNFNNAPKRIPGVANSARINVTSHETLLSLP
FT                 YLHKLNEENLQQLAEVHANLTIGPILSTVVGVAVCAVLIGVFWWLRRRQQK
FT                 GNTIAIQQMLKNLSLTEDGQVLREG"
XX
SQ   Sequence 6986 BP; 2307 A; 1647 C; 1549 G; 1482 T; 1 other;
     ggcgcccaac gcgatcggac caagcccgag aagtaataaa atcagttagc gcggagacaa        60
     cgcccgctaa gtgataagtg aacagtgata agtgaaaata acgatataca aaatatcaac       120
     aaaagagcgc ggagacaacg cccgctccaa gattagacaa cattaaagaa aacattaaac       180
     cattctaaca aaagagcgcg gagacaacgc ccgctccaaa attagacaac tttaaagaaa       240
     acattaaacc attctaacaa aagagcgcgg agacaacgcc cgctccaaaa ttagaaaatt       300
     ttaaagaaaa cattaaacca ttctaacaaa agagcgcgga gacaacgccc gctccaagat       360
     tagaaaatcg caaactacgc ccgtggcaga tctacaagag atcgctgcac taagaagctc       420
     atagcctgag tataaacaaa ggcaattaat caacccaaaa aactgttaca ccaaagcgga       480
     cggctttggg cagcggcgaa gatagacaag gaagaattaa ctccaacccg actggaaaga       540
     gctacagaac aacaacaaca aataaaagca tagccaaaaa aaaggaacat gtaagtgaaa       600
     ccctttttca acaatcgcca aatttaaaat aaagtaaaaa cgtatagaaa attacttaga       660
     gtgaaacatc attctaaaga acgaaatcaa aaaataataa aaagaaaaga aacaaacaaa       720
     taaaacgttc atatatgtac caaaacgttc aaacgtcaaa atttctcaga attttttttc       780
     ttcccctgcc ccttttgtcg cgataagtgt aagtgggaaa cataacaccg caccacaaat       840
     acatcgttgg gggcggacaa taaaaaaatc tgtgtttgag ggagctcgaa tttgactctt       900
     aaaataaaca aacaataaca gcggcccggg gcagctgaaa taaacctaag acaaagacgg       960
     aaagaagcgg tagggggaaa actgaaagga atttttatat gtccattgac aataacatca      1020
     acgagctaga agagttgttc gaagaactca gtttagactt tcaaattgga ccagaagaag      1080
     taatagaaat aatgaatgcg gaacaaatcg aagccgccat atctgcggcg gtcaccgctg      1140
     cgttggctgc gcagagaacc aactttgagg aacgcttgca agcggtaact gaccaattgc      1200
     aggctattag agttcaggct cccgaagccc aggcctacga gccgattacc ctagatcgaa      1260
     acatacgttg cgatgaggct ctggatgcgg ttaaaacgct gccagagttc catggggccc      1320
     aggaacagta cgtctcctgg cgccaggcag caaaggctgc ctataaacta tatgacggat      1380
     ttgtaggtag ctcaaaacat taccaagcgg tcctgataat caggaataag attagaggct      1440
     ccgctgactc actcttatca tcattcaaca cagtgttgaa ctttgaggca atcatcaatc      1500
     gcctcgattt cacgtatgcg gacaagcgtc cactgcacct actagaacaa gagcttgcca      1560
     cgctccgaca gggtggcatg cccatcactc aattctatga agaggttgag aagaaactca      1620
     cactcctcac aaacaaaaca atcatgtcac aagacgccgc tcaggcgcaa tacattaatg      1680
     aaaagtatag ggccgacgct ctccgtgtct tcatttcagg cctaagaaga ggcgttacgg      1740
     acacactgtt tgcggcgcag cctaaagatt tgccatcagc tctagccatg gcgcaagaaa      1800
     ttgaagccaa tcacgatagg cacgactttg cggcaaatta cgcaagagtg ctagaaaaca      1860
     agggccaaaa cagaaataga tacaaacagg gtgggcaaaa tgagcccgat cactttaaaa      1920
     ggcaatcaaa aaaccctttc tacacgaata atcagggcac tcaccaacta aatggtcacc      1980
     gtggccaaga taaggtggaa atgatggatg tcgacccatc ttcctctaaa ctccgtcaac      2040
     cgactaactt tcaaaagcaa ctgggtacca atttaggctc accggcgggg acaaaccgta      2100
     atatcgggca ccaacagggt gcgttcaaga ggccggctgg atcccagaga ctctctgacc      2160
     aacgcagaca gcgggttaat cacatcgctc aggaggacct agatcagtac gaacaaaagt      2220
     acgatcagtt ggcgtctgag gcggtggagg agatcgatga ggagaacaat gcgggatacg      2280
     aaagcgatac cgttaatttt ttaggggaga atccctgctc ccgttcgtca agcgaacagt      2340
     tgcggggaga acagtaaaca tcttaataga tactggggcc gcgaaaaatt acataaagcc      2400
     actaaaagaa cttcagggaa ttgtccctgt agaagcccca ttcattgtaa agtccctaca      2460
     cggcttcaac aaagtaaatc aaaaatgttt cctaaccatg ttcggcatta gaagcccgtt      2520
     tttcatcttg ccagagctat ctacttttga tggcatcata gggcttgaca cgctgactaa      2580
     ggctggcgtc aatataaact tggaaacaaa gaaactccac ttcgggcatg aatctgaaaa      2640
     aatcttattc cacaagtgcc ccagcgtcaa cttcacgaaa gtagacgata tcgaagttcc      2700
     accagcagta agggaggaat ttctcaaaat gatgtccaac cgtattaagg catttgcaga      2760
     tccaactgaa atgctgccct ttaatacggc aatagtagcc acaattagga ccgaggatga      2820
     ggaaccgatc tactcaaaga tgtacccttt tcctgtaggg gccactgact tcgtcaatga      2880
     cgaagtgaaa gaccttttga ggaacaagat cattcggcca tctaggtctc cgtacaacaa      2940
     ccccatatgg gttgtcggaa aaaaaggcac tgacagttcg ggttcaagca agagacggct      3000
     agtcatagac ttccgcaagc ttaactcaaa gaccatacca gacaagtacc cgatgccttg      3060
     tatctccatg atactttcta atctggggaa ggcaagatac ttcactaccc ttgacctaaa      3120
     gtcagggtac caccaaatca cactagctga gcgcgatcgc gaaaaaacat cattttcggt      3180
     aaacggaggt aaatatgaat tttgccggtt accattcggc ctcaagaatg catccagcat      3240
     ttttcaacgg gccattgacg acgtactgcg ggagcatatc ggcaagatat gctatgtgta      3300
     cgttgatgat gtcatcgtgt tctcgaggag tgagtcggat catgtcaaag acattgacac      3360
     cgtgctcagc agcctccacg acgcaaacat gagggtgtca aaggagaagt cccagttctt      3420
     caagggacaa gtggaattcc ttggtttcgt ggtgtcaacc gagggcacaa gaacaagccc      3480
     cgataaagtg aaggctattc aggagtttaa acaaccctcc accctgttcg cggtaagatc      3540
     attcttgggt ctagccagct actacaggtg cttcataaaa gacttcgctc agatagcaag      3600
     gccaatttcc agcattttaa agggagagaa cggcaaaatc agcaagcaac gctcgaagtc      3660
     tgttcctata cagtttgacg aggtacaaaa acaagccttc gataaactta ggaatatttt      3720
     gtcatcggaa gacgttattc tccactaccc agactttaac cagccattcg acctaaccac      3780
     tgatgcctct gccagtggca ttggggcggt gctgtcgcaa ggcaatagac ccataaccat      3840
     gatttctagg actctgaagg atagagagct aaactacgcg accaatgaaa gagaactgtt      3900
     ggccatagtt tgggctctag actcgcttcg tcactaccta tatggaaaga gtgacattaa      3960
     catctacaca gaccatcagc cattgatatt cgcagtctcg gatagaaatc caaattccaa      4020
     aataaaacgt tggaaagcga gaatcgatga gtgtggcgcg agagtcttat acaaaccagg      4080
     cagggacaac catgtagcgg atgcgctatc gaggcaggat attaatgcct tagagagcca      4140
     gagtcgatcc gacgcagcta caattcacag tgaagcctcg cttacctatg taattgaggc      4200
     cacagacaaa ccagtgaact gcttcaggaa ccaaataatc ctggaagagg cagacacccc      4260
     ctcgaagcag cttcacattc tcttcgctga aaaaacccgt cacaaaattg atttcgtcag      4320
     tcgggacaca cttcttgcat ccatmaaaga ggtggtaaag cctggggtcg ttaacgccat      4380
     ctattgcact ctaccgattt tggcgttcgt gcagaatgaa cttgtgaagg cctttccgga      4440
     cacaaaattt cggtattgta agaccctagt gacagacatt acgaacgatg gggaacgaag      4500
     ggagatagtg accaccgagc acaatcgggc gcacagggca gcccaggaga atgtaaagca      4560
     ggtcctgcgc gactactact tcccaaaaat ggaaagaatc gcatcagaag tggtatctaa      4620
     ctgcaggata tgccaaaaag ccaagtatga cagacaccct agaaggcaag aattaggggt      4680
     gacgccgata ccggcaagag taggcgagtt gattcatatc gacatttttt ccactgcagg      4740
     aaaacacttc ttaaccgcga ttgacaaatt ttcaaaattt gcaataacgc aacaagtcgc      4800
     ttcgcgcaca ataacagacc ttaaaatacc aattttgcaa ctggtgaaca tcttcccagc      4860
     cataaagacc atctattgtg acaatgagcc agccttcaat tctgagacca ttcggtcctt      4920
     attgaagaac caattcaacg tcgatgtagc aaatgccccg ccgttgcaca gcacatcaaa      4980
     cggacaagta gagcgcttcc acagcacctt gttagaaatt gccaggtgtt tgaagttgca      5040
     gcgccaggtt gacgatacgg tcgaactagt cattctagcg accatcgaat acaaccgtac      5100
     catccactcc gtcacgaaca agacgcccat agatgtggtc cacgcaaatt gcgaccttgg      5160
     ggaagagata atgttgaaac tggtaaaggc ccagcaggag caacttggta gaaacaaccc      5220
     aaacagacaa aataggacct tcgatgtggg agaacaagtc ctagtaaaaa ctaacaggag      5280
     gttaggaaac aagctaactc ccctctgcac ggagcaaagg gtagaagcag atctaggaac      5340
     caccgttctt attaaaggga gggtggtcca caaagacaat ttgaggtaga taagcacgat      5400
     tcctttacct accccaagaa aaaagggttt tgtagcgtta agttcaggtc ctcaaggaca      5460
     attagtagta aaagtaagaa aaaccgtacg acataattaa taagtgctgt gcctctcgtt      5520
     tcttataggt ctcccgttcg atatctctac atcctagcaa tcttaccgct aacaaccttg      5580
     accgtctcaa aactgacaga ctattcacac gctgattata tccctattat tgacggacgc      5640
     acagcaatat ggaacgaaac cttttatata aaacatgtca cgaacttaac ggaatatgaa      5700
     cagtacattc aggagacaat agaattaatg gacattttcc cacagacaca tatgagaaag      5760
     attttagaga cagatacaaa acacctactg acactgactg cggcactggg agttcaccac      5820
     aggcatgcga ggagcttgaa catcctgggg tcagcgctga aagtcatcgc agggactccg      5880
     gactttgatg acttacagca aacgagacag gttgagtacg atctaattaa agccaacaat      5940
     agacagataa ctatcaactc gagaactcaa acacagatca atgccctcac cgaggccgta      6000
     aacaaattgc taaaagtaaa cagaaatgaa gaaattaaca attcctacct atatgagaac      6060
     cttctaacca gaaatagaat tttgacgctt gaactacaga acataatgat cgccaccacc      6120
     ttggcaaaaa taaatattgt aaatccagcc atcatcgaca gtgatgacct agaggcgatt      6180
     ttgagaaaag gttccacaga tatcagcgta acccaactat tgggcgctgc aaatgtgagg      6240
     gcactagcta ataaggaatt aataattttt gtaatagaag tacctagacc taagttcatt      6300
     tgcaagaaaa taaccatctt cccagtcgcg cacaaaggca tagcgatccg gttacccgag      6360
     cccatcatag cagaatgcgg caacaaagtc atcgccgtct catcgtgtat ggggccccca      6420
     tcactagcct tctgcaagga ggcaccagcg aatagttgcg cacaacagct gcactttggt      6480
     gctgtggccc actgcggtac gcagcctaac aatcagcccc cgatcttgga ggtggacgag      6540
     ggtattgtaa taatcaacga cgccatcgcc accgtggccg ccgatgatgg tcccgagcgt      6600
     agcattgcgg gaacatacct agtgactttt gaccgggtcg ccctcatcaa cggtacagag      6660
     tacaccaact tcaacaatgc gccgaagagg atcccaggcg tagcaaattc tgcgaggatc      6720
     aacgtcacca gccacgaaac tctactgagc ctgccttacc tccacaagtt gaatgaggaa      6780
     aatctgcagc aactggccga ggttcatgca aaccttacga tcggtcccat actgtctact      6840
     gtcgtaggtg tggccgtgtg cgccgttcta ataggcgttt tctggtggtt gcgacgcagg      6900
     cagcagaagg gaaacaccat cgcaattcaa cagatgttga agaacctgag cttgaccgag      6960
     gacggtcaag tcttgaggga gggagt                                           6986
//
ID   Gypsy-8_DAzt-LTR repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-393
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 812-812 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, often TATA.
XX
SQ   Sequence 393 BP; 105 A; 88 C; 93 G; 107 T; 0 other;
     agttaacgag agttaactga atctgccact ggatggagcg gactctgcat tattgtcgaa        60
     taagcagttt tcgtcatctg tgggatcgcg aacagcgcga ccgatcgacc ggatgccggc       120
     cgtcaataaa caccactcaa gaggcgctgg gtcagcactt tggctggata gcaaccggag       180
     tcgtgggcgg cagcgaaggg cttgccttta ggagtttagg atacttaagt ttagtcttta       240
     gcggtccgcc gagtggcagc aacatattcg ttctcgcctt gcgggcctta actactcata       300
     atcacttcat tgtacttgct tcaacctaaa acagtttaat atcattaaag attgtaaaac       360
     aaatctatac ttgtgtccaa ttaaataatt act                                    393
//
ID   Gypsy-8_DBi-I repbase;    DNA;    INV; 4420 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DBi_;
KW   Gypsy-8_DBi-LTR; Gypsy-8_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4420
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 835-835 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3131-3604] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           247..3180
FT                 /product="Gypsy-8_DBi-I_1p"
FT                 /translation="MALSKSLEGTASHWLSQTCFPGITWTQFRELFLQHFS
FT                 GTETLAATVMNLLNGRPNEGECLSLYGSRMVTSLMARWKSLSVEQIAVSVT
FT                 LAHAAGVDKRLRRLVFTTDIQTRNELHQELKAFSFDAGQSQQRDNVPVLQG
FT                 KRISAMPHITCYNCGKPGHKKAECRFNEETTQRQQPRNQQSGYTGGRDRSS
FT                 VICYKCGKAGHVSTVCPDRPPVKSNTVKDVNICTVLEPLGTLLQSGESFQF
FT                 YFDSGAECSLIKETASLRLSGTRINNVVTLRGIGGNSVCSTLQIMANVLIC
FT                 ERSLEILFHVVLDNHIKYEALIGREILSQGIGVTITSSALTLFSEKSILPV
FT                 AVSECTPDLADVDTDLRGPDKDRLLSILQKFSNSFVNGIPQSRVITGQLEI
FT                 RLIDQNKTVQRRPYRLSVEEKEKVRHSIQELLDANIIRPSSSPFASPMLLV
FT                 RKKNGTDRLCVDYRELNANTVSDKYPLPLISDQIARLSGARFFTCIDMASG
FT                 FHQIPIHANSIERTAFVTPEGQYEYLAMPFGLKNAPSVFQRAINRALGDLA
FT                 YKYAVVYMDDVMIVARTNEEAFERLQITLQTLAEAGFSFNIKKCSFLKTCV
FT                 EYLGFEVRAGEIRPNPGKIRALVDLPPPQSVTQLRQFIGLVSYFRQFVPKF
FT                 SQLLKPLYVLTSKSITFLWKLEHEQIRQEVIRILTSEPVLTIFDPLFPIEL
FT                 HTDASADGYGAILLHKIEHKPRVIEYFSKRTSPAESRYHSYELETLAVYNA
FT                 IKHFRHYLQGRHFVVFTDCNSLKASRTKAELTPRVHRWWSYMQSFEFDIQY
FT                 RPGERMAHVDFLSRNPISKDRVKSKGTMEKHIDLTEITDNWLLAEQQRDEE
FT                 TSSIVSKLRSDDLAEDLAKTYELRAGTLYRKIQRNGKTRCLPIIPKPFRWS
FT                 AVNNVHESIMHLGWEKTLEKMYEYYWFERMSKYVRKFVDNCITCRLSKSPS
FT                 GRVQAELHPIPVAYSPHGPYREA"
FT   CDS           2909..4123
FT                 /product="Gypsy-8_DBi-I_2p"
FT                 /translation="MGKLVASLLSQSRLGGLPLIMCTSPLCTLGGRKPLRK
FT                 CMSIIGSKGCPSTFANLSTTVLHADCQNLHLAGYKLNCILYPWHTVHMDLT
FT                 GKLSGKNDQKEYIIVSIDAFTKFVSLSHTVRLDTESCIKALKSLISLFGVP
FT                 SRLIADQGRSFSSTAFRDFCSVQKIDLHLIATGASRANGQVERVMSTLKSM
FT                 LTAVETGQGSWQDALCEIQLALNCTPNRVTKVSPLEMLIGKEARPFGLVPI
FT                 VENENVVDIDQVREMAKQNMEKNACYDKARFDKSKATIIRHKVGDYVLLKN
FT                 EERHQTKLDPKFRGPFLVTEILEGDRYRLKALNNNRTYKYSHEFLRRMPEK
FT                 GIATELDDECDDEEAMELNDEGGDGDTQIKPVRAVILKKNEIFKMIGELLF
FT                 GRLMNQTASYL"
XX
SQ   Sequence 4420 BP; 1323 A; 882 C; 1001 G; 1214 T; 0 other;
     tcagaagtgg gattacctcc gcctccatcc aatgacgcaa atctcctagc aatcctggaa        60
     ttgcaaaatc gtaatttcgc cgaactgata aaacaagtgc agtgctctca aaatgagcca       120
     aaagatatca aaaccattgc actgccaaag ttcaaccccg atcgtgcagg atcagacgcg       180
     ctgtcctggt gttcaacagt cgactacatt ttgtctgaaa atcagctcgt gggtagcgct       240
     cttgtaatgg cgctcagcaa atcactggaa ggcaccgcat cacactggct ctcgcagaca       300
     tgttttcccg gcattacatg gacgcagttc cgagaattat ttttgcaaca tttttctgga       360
     acggagactt tggccgccac cgttatgaat ttgctaaatg gacgcccaaa tgaaggagag       420
     tgcttgtcgt tgtatgggag cagaatggtc acttccctta tggcccgctg gaagtcgctc       480
     agcgtcgagc aaattgcagt atccgttacg ttggcacacg cggctggggt agataaaaga       540
     ttgcgccgtt tggtctttac cacggatatc caaaccagaa acgagctgca tcaggaactc       600
     aaagcctttt cgtttgacgc cggacagagc caacagagag acaacgtacc agtactacaa       660
     ggaaaaagaa tcagcgctat gcctcacatc acgtgttaca actgtggcaa acccggccac       720
     aagaaggcgg aatgtcgctt taacgaagag acaacccagc gtcagcagcc ccgtaatcaa       780
     caatctggat atactggagg aagagatcga tcatccgtca tctgttacaa atgtggaaaa       840
     gctggacatg tatctactgt ctgcccggat cgtccgccag tcaaaagcaa caccgtcaaa       900
     gatgtgaaca tatgcaccgt acttgagccc ttaggaactt tactgcagtc tggtgagtcg       960
     ttccaatttt acttcgactc cggagccgaa tgctcactca tcaaagagac tgcatcgctg      1020
     agattatcag gcactagaat aaacaacgta gtgacattaa ggggtatagg tggtaactcc      1080
     gtttgtagca ctttacagat tatggcaaat gttttgattt gtgagcgttc acttgaaatc      1140
     ttatttcacg tagttttaga taatcatatt aaatacgaag ctttgattgg tcgtgaaatt      1200
     ttgagccagg gcatcggcgt gacaattaca tcaagcgcgc ttactttatt tagtgaaaag      1260
     tctatattac ctgtcgcggt ctccgaatgt actcctgacc tggccgatgt tgacaccgat      1320
     ttgcgtggac cagataaaga tagactgcta tcaatattac aaaaattctc aaattcgttc      1380
     gtaaacggta ttccacagag ccgcgtgatt acgggacagc tagaaattcg cttgattgat      1440
     caaaacaaga cggttcagag gcgcccttac cgtttgagtg tagaggaaaa agaaaaggtt      1500
     agacattcta ttcaagagct gttggatgcg aacattataa gaccaagttc ctctcccttt      1560
     gcgagtccga tgttacttgt ccgaaagaaa aatggaacag atcgtctctg tgttgactat      1620
     cgggagctta atgccaatac tgtttccgac aagtatccgt tgccacttat atcggaccag      1680
     atagctaggt tgagtggggc taggtttttc acgtgcattg atatggccag cggttttcat      1740
     cagatcccaa tacatgcaaa ctctatcgaa cggacggctt ttgtaactcc agaaggacag      1800
     tacgagtact tggctatgcc ttttgggctt aaaaatgcgc cttcggtatt ccaaagggct      1860
     attaatcgtg ccttaggtga tctggcttat aaatatgccg ttgtttatat ggacgatgta      1920
     atgatagtcg cacgtacaaa tgaagaagct tttgagagat tacaaatcac cctgcaaaca      1980
     ctagccgaag caggattttc tttcaacata aagaaatgtt cctttctaaa aacttgtgtc      2040
     gaatacttag gttttgaagt tagagcaggt gagattcgac cgaatcctgg gaaaatacga      2100
     gctctagtag acttaccgcc cccgcaatcc gtcactcaac tgagacaatt tattggactg      2160
     gtctcgtatt ttcgtcagtt tgtacctaag ttttcacagt tgctaaaacc cctctatgtt      2220
     cttacttcaa aaagtataac atttttatgg aaattagagc atgagcagat acgacaggaa      2280
     gtgattcgta tcctgactag tgaacccgtt ctgactattt tcgatcccct attccctatt      2340
     gaacttcata cagatgcgag tgctgacggc tatggcgcaa ttttgttgca taaaatcgaa      2400
     cacaagccta gagttatcga atactttagt aaacggacct cgccagcgga atcgcgttat      2460
     cattcatacg aactggaaac acttgcagtt tacaatgcta ttaagcattt tcgccattac      2520
     ctacagggtc gacatttcgt cgtgtttact gactgcaatt cgctcaaagc ctctcgcaca      2580
     aaagcagaac taaccccgag agttcatagg tggtggtcat acatgcaatc ttttgagttt      2640
     gatattcagt ataggccagg tgaaagaatg gctcacgtag attttctgtc ccgaaatcct      2700
     atatcaaaag atcgcgtcaa gtcaaaaggt acaatggaaa aacatataga tttgacagag      2760
     atcactgaca attggttgtt agctgagcag caacgcgacg aggaaacgtc gtctattgtt      2820
     tctaaattgc gtagcgatga tcttgctgag gatttggcca aaacgtatga attaagggca      2880
     ggaacactat atagaaaaat tcaaaggaat gggaaaactc gttgcctccc tattatccca      2940
     aagccgttta ggtggtctgc cgttaataat gtgcacgagt ccattatgca ccttgggtgg      3000
     gagaaaaccc ttgagaaaat gtatgagtat tattggttcg aaaggatgtc caagtacgtt      3060
     cgcaaatttg tcgacaactg tattacatgc agactgtcaa aatctccatc tggcagggta      3120
     caagctgaat tgcatcctat acccgtggca tacagtccac atggacctta cagggaagct      3180
     tagtggtaaa aatgatcaga aggagtatat aatcgtatca atagacgcgt tcacgaagtt      3240
     tgtctctttg tcccatacag tgaggctgga tacagaaagt tgtattaagg ctttaaagtc      3300
     cctaatatca ttgtttggtg tcccttctcg tctgattgca gatcagggac ggagtttttc      3360
     tagtacagca ttccgtgatt tctgctctgt tcaaaaaata gatttacatt tgatcgccac      3420
     aggcgctagt cgggccaatg gccaagtaga gcgagttatg agtactctaa aatctatgct      3480
     aacggcggtt gagacaggtc aggggtcatg gcaggatgct ctttgcgaga ttcaactggc      3540
     tcttaattgt actcccaata gagtgactaa ggttagccct ttagaaatgc ttattggcaa      3600
     ggaagcaagg ccatttggtc tcgtacctat tgtcgaaaat gaaaatgttg ttgatattga      3660
     ccaagttaga gaaatggcaa agcaaaacat ggaaaagaat gcctgttatg ataaagctag      3720
     atttgataaa tctaaggcta ctattataag acacaaggtc ggtgactacg tattgcttaa      3780
     aaacgaagag cgtcatcaga caaaactaga ccctaagttt agaggaccat tcttagtgac      3840
     cgaaatatta gaaggagatc ggtatagact taaggcgtta aataataata ggacatataa      3900
     atattctcac gaatttttga gacgtatgcc agagaagggg attgccacag aattggatga      3960
     tgagtgtgat gatgaagaag ccatggagct taatgatgaa ggtggtgatg gagataccca      4020
     gatcaagccg gtgagggctg tgattttgaa aaagaatgaa atttttaaaa tgatcggtga      4080
     attgttattt ggccggctta tgaatcaaac tgcgagctat ttatgatggc cggtttgccc      4140
     agatataagc tgtgggctaa atgaacacac ctattgactg gccagtttat cttatggatg      4200
     actgtgtgct agttgatgac atggtttttg taaactaatg aagaacatga tcgctatatg      4260
     gaagaaaaaa attgaaataa ttttgtttga ttttgattta ataagaaaaa aaaatgtgaa      4320
     accatcttga actttatttt tgtgtagaac ataagagaat atattttgta aacctttata      4380
     ttgtacactc acgaggacgt gagataggtc aggaaggccg                            4420
//
ID   Gypsy-8_DBi-LTR repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   11-DEC-2011 (Rel. 17.06, Created)
DT   11-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DBi_;
KW   Gypsy-8_DBi-I; Gypsy-8_DBi-LTR.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-322
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 836-836 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 322 BP; 84 A; 63 C; 84 G; 91 T; 0 other;
     tgtcgcatat tgttttggaa attcaaatta taacgattat ttgttggtac actcttgttt        60
     tacttcttat tgcttctcgg ttctttcgtg cgagacggat acgcaattcc gtcagcgtag       120
     tctgggcgtg ggcgtgagtg agacaaatag tgttcgtcat aactcaccac actatgcgtg       180
     tgtattcgag ggtaaaggaa atgagaagga acgaacgtga gttcgagcgg cagactaaaa       240
     agtgaagctg gagatcatgc cacgcgccag aaaacgcttc gccgaaagtc cagtcgagga       300
     ctttgatact ggatcttcgt ca                                                322
//
ID   Gypsy-8_DBp-I repbase;    DNA;    INV; 6187 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 17.05, Created)
DT   23-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DBp_;
KW   Gypsy-8_DBp-LTR; Gypsy-8_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6187
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 667-667 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3072-3575] - Reverse transcriptase
CC   Positions [4652-5128] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2169..4682
FT                 /product="Gypsy-8_DBp-I_3p"
FT                 /translation="MSKMFTKIGKLPSGQPCRSENGCPNVDSDEDKNKTTE
FT                 HVSIRKGSVQSPDHSNTRSFKPYHVRLKEYNETRRRIFTNDTDRKTRSRSA
FT                 TRQRDFWKSKHQYNSCLISAISKVSNDIRPFANLVLLDEPYLALLDSGANK
FT                 SVIGGTLAKSIVSGKYKFSRAHGNVRTADGTKQSTFGTITIPINYNNTKKE
FT                 MEFLVVPSITQEVICGMDFWEKFGISVSLGGRVNELNFEEESTKLNLSEVQ
FT                 KSRLKSVIDFFPSSDRDGLGMTNLIEHSIDTGNAKPIKQRHYPLSPAREKL
FT                 LCTEIDRMIKLGVIEEALTSSWSSPVVLIVKPDKVRFCLDSRKVNDVTIKD
FT                 SYPIPNLEGLLSRLPPVHCISKIDLKDAFWQINLDPQSRPKTAFTVPNRPL
FT                 YQFRRMPFGLCNAPQTMCRLMDQVIPYQLKSHVFVYLDDLLVMSSSFDDHL
FT                 KHLSEVATRLRHAGLTINIKKSQFGLRKVEYLGYVVGEGTLQVNPKKISAV
FT                 SEFPVPKSQTQLRRFLGMCGWYRRFISHYSTITVPLTDLLRERLSWNIKHK
FT                 LCSAPLLVHPDYDKPFLIQCDASKCGVGGVLAQCDELGNERPIAYMSQKLN
FT                 GAQRNYTVTELECLAVVFAIQKFRMYVEGHSFTVITDHSALRWLMKQTDLS
FT                 GRLARWAIKLQGFVFKIEHRKGVQNVVPDALSRSFEDSTEIAEIDVDILPE
FT                 IDLQSDTFQSDEYRQLRDRVQNAKVPGFRVVDIYIYYRAGFASGNPQVDEG
FT                 DYKLWVPSELRAGVIQSAHDQPSSAHGGVAKCLERIRRNFYWPNMVTDVRN
FT                 YVARCDICKTCKHPTQRLRPPWVVKPLVKDRFNGSM"
XX
SQ   Sequence 6187 BP; 1994 A; 1338 C; 1317 G; 1537 T; 1 other;
     cagaataaat ggcgcccaac gtggggcgag caagcaagcg aaagcaaagc aaaagcataa        60
     ccagaatacc accatgcttt tccgagcttt ccccaacata ccctaacagt catccctcta       120
     gaaaagttgt tttagtttcc gtaatccttt gcttattctt ctaggattgc tgcgttttgg       180
     gaaacacctc aaaagcagac cagggaataa actaaaggtg tagaacgtta gatcttatat       240
     atttattcaa gtcaaaagaa atcgagattg tattcattgg aaaattcagt ggtaactctt       300
     tcttaaacac ttgaaaccct aatacaaccc attaatatct ccaggagtta gagaattgta       360
     gttgttggaa aattcaacag tacctcattc cagaatatta cggcctcaac tattgtcaca       420
     atwcatttaa tcagttaagt tgcctaaacg aaatcgagat tgattctggc tggaacaatt       480
     cagcaggata ctctttcatt tagcgcaatg aacacatcag gttcttttag attcagttaa       540
     atgtgaagat gcagacaaaa gctattgtaa tatcaaaaag gaaatcgtta tagcaatgga       600
     taagacccag attatcagtt gaaaattcag gcttccgaat tttgttagta gtgccaattt       660
     gtagcaagta ggagcgttag taactgcata taaatatcct ttgttgtggt aaaatattga       720
     aaacgaaata atgtcagtca ggcgcagtcc tgagaatact tcgagattgc ccgttgagtc       780
     ggtgcaatgc tccgtatgca atgaatccaa cgcggataca gaatttgttg aaacaccctg       840
     taaacaccgt tttcatcgca cgtgtgtaac tacgtggtta cagcaaaatg aaacatgtcc       900
     caattgtcgt cagctatgtc taccctcgca gctaactaat agcacaaggg aaacacagga       960
     cgctaattta gaaattccaa gggtccaaaa cggatctact tcaaactcgc gaacaggtgc      1020
     catcccaaga aatcgcccca atactagacc taccacaaga tcaacaacta ctggatccaa      1080
     tagtcgtcca agcacaagtt cgcaagctca gcgctcacca cgtgtaggag gttcgcaaag      1140
     aacaaatagc gtttcagaag ggagaattca ggaactcata gcaaatgcgt tagaatctta      1200
     ccaagcccaa ctctcttcaa cgttatcaga acaaattagt ctggcgatgc aaaaccttaa      1260
     cataccgtcc tcccaaagac aatcccttga atgggatacg gagctgcctc cagcagaccc      1320
     cctaataaat cagccttttg atcatcacgt gtccgttaac cataatatct caggtaatcg      1380
     ttcactagat aatcgtagag aggaccacat catccgacca gaccaaattt caagcttatt      1440
     ggttcactgg aaactacagt tttctggttc accaaaagac atttttgtcg atgactttat      1500
     ataccgggta aacacattaa cgcgacgatc gttgaatgga aacttcgatc tcttgtatga      1560
     gtacgcgaat ttattgtttg gtaggcccag cattaacatt ctcttggaga tgccatagtt      1620
     cggagcagat gaattggcat gtactttgct ctcgtgtgag ggagagatga aagaccaaag      1680
     atcagatcag gacaatacga ggtgcaatgc gtagaaggaa gcaaggaaat aatgaatgtt      1740
     ttgatgactt tcttgaccca atcttggcca ttgcggatgc cttatccgag cctatgacag      1800
     actctgattt agttcaggca gttaggaaca acttgagatc ggacataggg ccgacatctt      1860
     gcatacagaa accccaacta tagccgcgtt acgcagacac tgtcaccgtc acgaagagtt      1920
     cttcaattct ctaagagcta agaacaactt ccgtaaccca gttgtaaggc gaaacataaa      1980
     gaaatatcga tagacgaaga acccgaagta ccctttcaag aaaacgaacc acagatttcg      2040
     gcgattcgaa atgagaatcg aacgaaatgt cggaactgtg agactatagg tcatagattt      2100
     aaagattgtc cccagccgca ccgagtattt tgctatggtt gtggcgcagt aaatatgtat      2160
     aagccatcat gtccaaaatg ttcacaaaaa tcgggaaact tccaagcgga caaccgtgcc      2220
     ggtccgagaa cggatgcccg aatgtagact cggacgaaga caagaataaa acgaccgaac      2280
     atgtatcaat ccgcaaagga tcggtacagt cacctgacca ttctaacacc cggtctttta      2340
     agccttatca tgttcgacta aaagaatata acgaaacgag gcgaagaatc tttacaaacg      2400
     ataccgatag aaaaactaga agtcgttcag caacgagaca gcgggacttc tggaaatcaa      2460
     agcaccaata caacagttgt ttaatatcag cgataagcaa agtaagcaat gacattcgtc      2520
     ctttcgcaaa tctagtttta ctcgatgagc cgtatttagc tttactagat agtggagcta      2580
     ataaaagcgt aatcggagga actttagcta aaagtattgt ttcgggaaaa tacaagttct      2640
     ctagggcgca cggcaacgta cgaacggcag acggaacgaa acaatccact tttggcacta      2700
     taaccattcc gattaattat aataacacaa aaaaagaaat ggaattttta gtagtaccat      2760
     ctattacaca agaagttatt tgtgggatgg acttttggga aaaattcgga atctccgtct      2820
     ccttaggagg cagggtgaat gaattgaact ttgaagaaga atccacaaag ctcaatttat      2880
     cggaagtcca gaaatccaga ctaaaaagtg taatagattt cttcccgtca tccgacagag      2940
     atggtcttgg catgacaaac ttaatcgaac attcgattga taccggcaat gccaagccga      3000
     taaaacagag gcattaccct ttgtcacccg cgcgtgaaaa acttctatgt acggagattg      3060
     ataggatgat aaaactagga gttattgaag aagccctaac atcatcgtgg tcatctcctg      3120
     tcgttttaat agtcaagcca gataaagtta ggttttgctt agattcgaga aaggtgaacg      3180
     atgttacaat aaaagactca tacccaatcc caaacctaga gggacttttg agccgccttc      3240
     ctccagttca ctgcatttca aaaattgact tgaaagatgc cttttggcaa atcaatttag      3300
     acccgcagtc tcgcccaaaa accgcattca cagttccgaa taggccatta taccaattta      3360
     ggcgtatgcc atttggactg tgcaacgccc ctcagacgat gtgtcgtctt atggatcagg      3420
     tcatacccta ccaactgaaa tctcacgtat ttgtctattt ggacgacctt ctggttatgt      3480
     catcaagctt tgacgatcat ttaaagcacc tctcagaagt tgcgactcgt ttacggcatg      3540
     ccggcctaac gatcaatatc aaaaagagcc aatttggtct tcggaaggtc gaatatttag      3600
     gttacgttgt aggcgaagga acactacaag taaacccgaa aaagatcagt gcggtatctg      3660
     agtttcctgt ccccaaaagt caaacgcaac taagacgctt ccttggcatg tgcggatggt      3720
     accgtcgatt tatatctcac tattcaacaa taacagtccc acttacagac ctacttcggg      3780
     aaagactttc ttggaacatc aagcataagc tttgttccgc tccgcttcta gttcatccag      3840
     actatgacaa gccgtttcta atacaatgcg atgcatctaa atgcggagtc gggggagtat      3900
     tagcgcagtg cgacgaatta ggcaacgagc gtcctatcgc atatatgtcc caaaaattga      3960
     atggagctca acgtaactac acagttacag agttagaatg tcttgccgtc gtgttcgcaa      4020
     tccagaagtt tcgtatgtat gtagaaggtc acagttttac ggtcataacc gatcactcag      4080
     ccttgcgatg gttaatgaaa caaacagacc tcagcgggag actagcccgt tgggctatta      4140
     agttacaagg ctttgttttt aaaatcgagc atcgcaaggg ggttcaaaat gttgtaccag      4200
     acgccttgtc acggtcgttc gaggactcga cagaaatcgc agagatagat gtagacatcc      4260
     tgccagagat cgatttgcaa tcagacacat tccaatcgga cgaataccgt cagttaagag      4320
     accgtgtaca aaatgcaaaa gtaccgggat ttcgggtcgt ggatatctat atatattata      4380
     gagcaggctt tgccagcgga aatccacaag ttgacgaggg cgactacaaa ctctgggtcc      4440
     caagtgaatt gagagcaggc gtaattcagt ctgcacatga ccaaccatca tcggcacatg      4500
     gtggagtagc caaatgtctt gagcgaattc gaagaaactt ttattggccg aatatggtaa      4560
     ccgatgttcg aaattatgta gctcgttgtg atatatgcaa aacctgcaaa catccgacgc      4620
     aacgtcttcg cccgccatgg gttgtcaagc cactagtgaa agaccgtttc aacggatcta      4680
     tgtagacttt atcggtccat ttcccagaac ccggaacggg aatataggga tattaattct      4740
     cctagaccat ttttctaaat tcacttggct taagcctgtt aagaaattca cttcaaaggt      4800
     agtgatcgac tatttaaagg acgatatttt ggtgtgtttt ggaactccgg aagttttggt      4860
     gagcgataat ggcactcagt ttaaaagcca ggacttcgca gcctttactg ctaagcacgg      4920
     aatccaacat attttcacag gcgcgtactc cccgcagtca aacgcggcgg agcgtgtaaa      4980
     tcgttcaata aatgctgctc tcagaagcta tattcaatca gatcaaagat tgtgggatag      5040
     ttatatagga agtataaact ctgcattgag gaatggtata caccaatcca ttggagaatc      5100
     accatactat gtagtctttg gccagcacat gctcacgcat ggcaaagact ataagttgct      5160
     acgaaatatc catatgttgt ccgaaggatc agcaaagatc gctagatcag acgaattccc      5220
     gagaatccga gcggatatcg ccaagcgaat ggcaaaagca taccagaaaa acagagatga      5280
     atatgattta cgttcccgac atcgaacctt tgaggtaggg caggaagtga taaaaagaaa      5340
     ttttgtctta agcaaccagg cttcgcatat taatgccaaa ttagcacctg taggaataaa      5400
     agctaaaata aaagagaagc gaggacagtc gttatattta ctcgaagaca aaaacggaaa      5460
     agagctagga accttccatg ccaaggatct ctggtgatgt accctttttc agctctcatc      5520
     tccggtaata tcacgtcgat gatacctgtg gtgtgagggt acgacttaaa attggacaaa      5580
     acaaaattat gaaaataaat ttaagttatt ttaactaata ttaagttgat aaaataagtc      5640
     gataacagct gcactgttat ccaaataaga gctgttaagc gcgaactttc tggcacctcg      5700
     atcgcctctc aaatgaggta cggcaacctc tttcactgcc attttaagat gcgccggata      5760
     caaatgttct tttgcattta aagttccgaa gagaaaagac gcaaattaaa agagtgcacc      5820
     tcaagttaaa accggggaaa ataataaacc ccaaagtaag gtgacaacgc agtcgaatca      5880
     gtggcgcaac agcaacacgg aattggccgt gttgcgcgca gatttcggca actgcacgtg      5940
     ggtgggaaaa cctacaggtg agcagggaaa atatccaagc gctaggtgac taacaaaagc      6000
     cttttaagta gaactcggac gggtagtgcc agggaaagcc accggcgagc gaaaagtacc      6060
     ctcggcgatc cagaagtcac aagcgaagca caaccacgcc aagtggtcaa gtgcgaacac      6120
     acctcgatca gcccctaaac gtgcacggaa ccggaccagg ctaaagccgc gatcggcgag      6180
     aagttcc                                                                6187
//
ID   Gypsy-8_DBp-LTR repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 17.05, Created)
DT   23-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DBp_;
KW   Gypsy-8_DBp-I; Gypsy-8_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-263
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 668-668 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 263 BP; 79 A; 64 C; 64 G; 56 T; 0 other;
     tgcagcttcc gggacgtgtg cgtgattggg gcagcatagg atcaggagaa gagtcgaaac        60
     cttgcggaat gagaacctaa aggggaacct cgtgtataca taacctcact accttgggcc       120
     aaaccgcatg tcgacctaag ctcgtattgg ccatgtgcaa accatactct cactctcgcc       180
     catagtgaca atatttaata atcaatatca cccacaacga tggaagaagc gtatcgaagc       240
     agcgtggagc cttaagttga aca                                               263
//
ID   Gypsy-8_DEl-I repbase;    DNA;    INV; 5209 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DEl_;
KW   Gypsy-8_DEl-LTR; Gypsy-8_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5209
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 524-524 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2790-3332] - Reverse transcriptase
CC   Positions [4347-4823] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1053..5207
FT                 /product="Gypsy-8_DEl-I_1p"
FT                 /translation="MNRQEILALLVAELRAKLSELGLSTTGRKCELQNKLL
FT                 AHYGLQSDENDEDAIEVDDDEDGSFASVNSDNYQAGAGAGNGAPRENRIVS
FT                 EQNSQIGNANTGRSWFTLKDVEGSVSQFSGTGSPDINQWIEELEECALTVE
FT                 WSQLQVFIYAKQLLSGAAKLYVRSQRNIGDWSLLKAALLEEFGVKVTSAEV
FT                 HRRLGKRQQKKTETLQEYLYALMELAKPIDLDDESLIEYFVDGIPDSKGNK
FT                 ALLYQAKKLKELKVQIEAYQKMRGSVKHVKYDSHFYKGEKETVKAVEKVRK
FT                 CFNCGDESHIKKDCPKRDNKCFRCNQPGHRAAQCKVELVAKQEKATNLVQV
FT                 EGRVKPTSTFTSSGLELKHVSFGKVTFKGLVDTGADLCLLRRNVFIRLGVE
FT                 NLTGGEKCLTGIGESQIVTFGSLTIPVQIDGINLNVEFHIISDEDMAFDAI
FT                 LGRTLLDSVDMKVTKDGTELVRRSDSRVGKGQKFEVREKEKNGSSCSELLN
FT                 EFQSLCMMTMEQAGSKLEVDVSHLPHSQRGVVKRMIDEYKPIRNVHCPVEM
FT                 KILLSDDLPVFQHPRRIAFSEQKVVDEQVQEWLEQRIIKPSTSEYASPIVL
FT                 VAKKNGQKRLCCDYRKLNEKIVRDNFPMIQMDNVIEKLQGATIFTTLDLTN
FT                 GYFHVPVEVDSQKYTSFVTQNGQYEFLYVPFGISNSPAVFTRFIMAVLREL
FT                 IKNGDAVVYMDDIIIPSSDVVEGIQKLQRVLEVAEQNGLKINWTKCQILQS
FT                 RVDFLGYIIENGSITPSDEKTQAVANFPVPSNQKAIQRFLGLTSYFRKFVD
FT                 GYAVIAKPLSDLLRKDVKFEFKELQQVAFEQLKAALTSKPVLKLYNPRLAT
FT                 EIHTDASKFGFGAVLLQKDPEDGQLHPVMYMSRKTKPCEEKYHSYELEVLA
FT                 VIGALTKWRIYVLGTKFKIITDCNAFAMTMKKKEVPLRVARWAMYLQDYDY
FT                 EIEHRSGTKMRHVDALSRVACFVLTDSVMHKLKEAQVADEWTNVIRNLVET
FT                 KGHEDYYIANQILFKNPDRELIVVPSQMETEIIQIAHKQGHFSAKKTQELV
FT                 EKSYFIPKLRDKVAKVVGSCVECILVNAKSGKQEGYLNPIDKGDKPLVTYH
FT                 IDHVGPMEITKKRYNHILVVVDAFSKYVWLYPTRSTGVEEVLNCLDRQAII
FT                 FGNPFRIVSDRGAAFTSHLFKEYCDKEKIQHLLIATGVPRGNGQVERMHKI
FT                 VVPMLSKMSLENPGNWYKHVGRVQQLINNIEPRSTKVAPFKLLTGVDMRVV
FT                 DIAELKEQVQQSLIEELDEEREQIRKQARDNIQALQEENRKAFDSKRKEEK
FT                 QYKVNDLVAIKRTQYGVGLKLKGKYLGPYKVVKVHKHGRYDVEKVGDSEGP
FT                 LKTSTVSEFMKEFGTNTTSGGP"
XX
SQ   Sequence 5209 BP; 1697 A; 861 C; 1382 G; 1269 T; 0 other;
     caaatttggg ggctcagccg gaatatttgg aactattaca aacctaagtc actaaactta        60
     gttgagtgtt aaaaaaccta agtcactaaa cttagtcgtg tgttaaaaaa gtggaaaaaa       120
     ctctgtgaat tgtcgttgca gacagttatg aactaaagca agtgtgctgc gcaaaaaaga       180
     aagacaacaa atttgcaaag cagggcagcg tgagtggaaa cgagacagca agttttcgca       240
     acattcgagc agttgtgaaa ttcgtttttg gcgcaacgaa ggaaagaggc aagaaaccga       300
     catagaaggc gattgaacag cgagtaccat tctggaggca gcgtaaagac tttgtggtga       360
     acgtcaacaa gcaagaggca ggatcgttgg cggtggtcat ctggacaaag tggaaggcgt       420
     ggagcagata cggtagcaag cggatcgcag aagttgtgcg tcaggagaag gcgaggacac       480
     gggcgtcagg aggctggtca aagcgaaaga aggaagacat atctggtgag gcagcgagaa       540
     gaatccaaag ctgtattggt gacacggcga gaagacattt ccggtgaggc agcggtacaa       600
     atccaaagct gtattgctgg gctggtgaaa gaaaacggtt gaagaaatat tggtgagtga       660
     cagagaaaac atcgagaggc gagacaagtt ttttgcaact tggctggcag aaggcgctgt       720
     gccagaaaag agaagtggag agcagcactg accaatttcg ttttggagac ctcttgttgg       780
     tcttattgga gagtaggaaa taatttgaaa tttaacagat tgcgtgcctg cagtcggact       840
     gttgtgtcaa cagctaaagt taacatagtg ttaaggtttg acattcattt cacattaacg       900
     tagagtaaag taaagtaaag ttcacagttt gaaagtccag tatatatata aaaaacttaa       960
     ttttgccgtg caggcggatt tgataaacat ttttgtattt tataagcact atattttata      1020
     tccttatatt ctataattat atttaagtaa aaatgaacag gcaagagatt ttggcactgc      1080
     tcgtggcaga attgcgcgct aagttgtcag agctaggtct tagtacaacc ggaagaaaat      1140
     gcgaattgca aaacaaacta cttgctcact atggtttgca atctgatgaa aacgatgaag      1200
     atgcgattga agtggatgat gatgaggatg gatcttttgc atcagtgaat tcagacaatt      1260
     accaggcagg tgcaggtgca ggaaatggtg cgcccaggga aaatcgaatt gtaagcgaac      1320
     agaacagtca aattggaaat gcgaacacag gtagatcgtg gtttacatta aaggatgtag      1380
     aggggagtgt gtcacagttt tcgggaactg gttcacctga cattaatcag tggatcgagg      1440
     aacttgaaga gtgtgcactt acggttgaat ggagtcagtt gcaggtgttt atatatgcaa      1500
     aacaattgct cagcggagcg gctaagcttt acgttcgtag tcagcgtaat attggcgatt      1560
     ggagcttact gaaagctgca ttgctagaag aatttggggt taaagttaca tcggcagagg      1620
     ttcatcgtag acttggcaag cgacaacaaa agaaaaccga aacgttacaa gagtacctgt      1680
     acgcgttaat ggaattggcg aagccaattg atttagacga tgaaagcttg atcgaatact      1740
     ttgtcgacgg tattccagac tcgaagggaa acaaggcttt actttatcaa gccaagaagc      1800
     taaaggagct gaaagttcaa atcgaggcat atcagaaaat gcgaggatcg gtgaagcacg      1860
     tcaagtatga ctctcacttt tataaaggtg aaaaggagac agtgaaagca gttgagaaag      1920
     ttaggaaatg ttttaactgt ggtgatgagt ctcacatcaa gaaggattgt ccaaagagag      1980
     acaacaagtg ctttaggtgc aaccagccag gacatagagc agcccagtgc aaggtcgagc      2040
     tagtagctaa acaggaaaag gcaactaatc tagtgcaggt ggaaggcagg gtgaagccaa      2100
     caagcacgtt tacgtcttcg ggattggagt tgaagcatgt ttcgtttggg aaagtaacct      2160
     tcaaaggatt ggtagatacg ggagcagact tgtgtttatt gcgacgcaac gtttttataa      2220
     ggctcggagt agaaaaccta acaggaggtg aaaaatgttt gacaggaatt ggggaaagcc      2280
     aaattgtgac ttttggaagc ctgacaatac cagtgcagat tgatggcatc aatctcaacg      2340
     tagaattcca cattatatcg gacgaagaca tggcatttga tgcaatttta ggtagaactc      2400
     ttctagatag tgtcgatatg aaagtgacaa aggacggaac cgagttggtt cgaagatcag      2460
     acagtcgggt cggtaaagga caaaagtttg aagttcgtga gaaagagaaa aacggaagtt      2520
     catgctcaga gctgctgaat gaattccaga gtttgtgtat gatgaccatg gagcaggcag      2580
     gaagcaagct agaggtagac gtttcacatt tgccacattc gcagagaggt gttgtgaaac      2640
     gcatgataga cgaatacaaa ccaattagga atgttcattg tccggtcgag atgaagattt      2700
     tgttaagcga tgatttgcca gtttttcagc atcctcgacg tatcgctttt agtgaacaaa      2760
     aggtagttga cgagcaggtt caggagtggc ttgaacaaag gattatcaag cccagtactt      2820
     cagagtacgc ttctccgatc gtactcgtgg caaaaaagaa tggccagaag cgattgtgtt      2880
     gcgactatcg caaattgaat gagaaaatag tgagggacaa ttttcctatg atacagatgg      2940
     acaacgtgat tgagaagtta cagggagcga caatttttac gacactggat ttgaccaacg      3000
     gttattttca tgttccggta gaagtagact cccaaaagta tacctcattt gttacacaga      3060
     acggacagta cgagttcttg tatgtgccgt ttggcatttc gaactcgccg gcagttttta      3120
     cgcgttttat aatggcagtt ctcagggagc tcatcaaaaa cggtgacgca gtggtttaca      3180
     tggatgacat tatcatccca agcagtgatg tcgtagaggg aatacaaaag ctgcaaagag      3240
     ttcttgaggt cgcagaacag aacgggttga aaatcaattg gaccaagtgt caaattttgc      3300
     agagcagggt agattttcta ggatatatta tcgaaaatgg ttcgatcaca cccagcgatg      3360
     agaaaacaca ggccgtagca aactttccag tgccgtctaa tcaaaaagcc atacagcgat      3420
     ttcttggttt gacatcatat tttaggaagt ttgtggatgg atacgcagta atagctaagc      3480
     cattgtcaga tttgctgaga aaggatgtaa agtttgagtt caaggagtta cagcaggtag      3540
     cattcgagca attaaaggca gcgttgacta gcaaaccagt tttgaaactg tacaatccta      3600
     gattggctac ggaaatacac acggatgcgt cgaagtttgg ttttggggca gttcttctac      3660
     aaaaggatcc agaggatgga cagttacacc ctgtcatgta catgagtaga aaaaccaagc      3720
     cttgtgaaga aaaatatcac tcatacgagt tggaggtcct agcagtcata ggagcgttga      3780
     caaaatggcg aatttatgtt ttgggaacga agttcaaaat catcacggat tgtaacgcgt      3840
     tcgccatgac gatgaaaaag aaagaagttc cgttgcgagt ggctaggtgg gcaatgtatc      3900
     tacaagacta cgattacgag atagaacatc gatcaggtac aaagatgagg catgtagacg      3960
     cactgagtcg agtagcttgt tttgtgttga ctgacagtgt aatgcacaag ttgaaggaag      4020
     ctcaggtggc agacgagtgg acaaatgtaa ttaggaatct agttgaaaca aaggggcatg      4080
     aggattatta catcgccaat caaatattgt ttaaaaaccc agacagagag ttgattgtag      4140
     ttccatctca aatggagact gagattatac agattgctca taagcaaggt catttttcgg      4200
     caaagaaaac acaggagctg gtggagaaat cctatttcat tccaaagttg agggataaag      4260
     tagctaaagt tgtaggcagc tgtgtggagt gcatcttggt taacgcaaaa tccggaaaac      4320
     aggaaggata tctaaatcct atcgataagg gggacaaacc tttagtcact tatcacatag      4380
     atcacgtagg gccgatggag atcaccaaga aaagatataa tcatatctta gtagttgtcg      4440
     atgcattttc gaaatacgtt tggttgtatc cgacgcgtag tactggagtc gaggaggtgc      4500
     taaactgttt agacaggcag gccataatat ttggaaatcc cttcaggatc gtgtcagatc      4560
     ggggtgcagc tttcacatcg cacttattca aggaatactg cgacaaagag aagatccagc      4620
     atttattgat cgctacaggt gtacctcgag gtaacgggca ggttgagaga atgcataaga      4680
     tcgtggtgcc aatgttgtca aagatgagcc tagaaaatcc aggaaattgg tacaaacacg      4740
     tgggtagagt gcagcagcta ataaacaata tcgagcctag gagcacaaag gtagcgccgt      4800
     tcaagttgct aacaggtgtg gacatgcgtg tagttgacat tgcagaactc aaagaacagg      4860
     tgcagcagtc tttgatagaa gagttggacg aagagcgtga acagatacgc aaacaagcca      4920
     gggacaacat tcaagcttta caggaggaga acagaaaagc tttcgattca aaaaggaaag      4980
     aggaaaagca atacaaagtc aatgacttag ttgcgattaa gcgtactcag tatggggtgg      5040
     gtttaaagtt gaaaggaaag tatcttggtc cctataaggt cgtcaaagtt cacaagcatg      5100
     gcaggtatga tgtggagaaa gtgggagata gcgaaggacc tttgaaaaca tccacagtat      5160
     ctgagtttat gaaggagttc gggacgaaca ccacgtcagg agggccgaa                  5209
//
ID   Gypsy-8_DEl-LTR repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DEl_;
KW   Gypsy-8_DEl-I; Gypsy-8_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-328
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 525-525 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 328 BP; 133 A; 69 C; 61 G; 65 T; 0 other;
     tgtaggaatc agaaacaaac cagaagagca agaacagaga aacacacgga gtggacgtca        60
     gttctgacaa cacagagaga gatcgctaat gtatgcgtgc gtttaacaga tcaggagaga       120
     aaaactctaa taaagtcagt cgatgccgaa atctcacgct aagcagtcca cagagacaca       180
     ctccactttg taaactcatt aaagtttaaa acaccacaca acactcagtt tgtaattaag       240
     tcaaatataa taataataaa taaagcatca aaataataaa actacgtcgt cctggaagta       300
     attcgcacta acggaactcc cggggcca                                          328
//
ID   Gypsy-8_DEu-I repbase;    DNA;    INV; 4888 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DEu_;
KW   Gypsy-8_DEu-LTR; Gypsy-8_DEu-I.
XX
NM   Gypsy-8_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4888
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 863-863 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4005-4517] - Integrase core
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4888 BP; 1477 A; 1111 C; 1564 G; 735 T; 1 other;
     tggcgcccga acaggttgaa gtggttgcag gaagaaggac accaagagag taatgtcgag        60
     ctgggtatac caggctacga aagcagagct ggtagaatac gcgagtgagt tcggcgtaga       120
     cccaagcgga ggatcaaggg aactaagaca gagattggcg acatacacaa agagcacgga       180
     tcacacagag gaagtcagga caagattgat ggaggtatca aataagtaca agaaaatgga       240
     aataccgggt ggaggagtcc aggtcgagcc ggacagcaaa aggacggcca cgaaagagga       300
     agcacggagc actggagaca ggaggaaagt ggaaactcta gacagagtga gaagttgggg       360
     aatacggtac cagggcacat ccaacccact ggagttccta ggcaagatgg aggaatgggc       420
     cataggatat ggcatagaca aggatgcatt ggtacagacg atgccattta tcttggaagg       480
     cgccgcagag gactggtgga atacgacgcc aagtcgggtg aggacatggg aagagctgag       540
     aagggaactc ctagagtact tcctaccgcc aaggtatcag gagcaactgg atgtgaaaat       600
     cggacaactc cgacagaagg agggagaacc aacacgaaca tacgcgatgg agctgagaaa       660
     gctgatgaga ttcaccgact actcggagga ggaaaaactg gataggatct acaagaactg       720
     tcggagcaag ataaaactgt atgcacgaag atcaggtttt gcgtcgctaa cagagttcct       780
     aacactggca gaagaggtgg aggaaattga ggcggcggaa agacagggac aaccggcaga       840
     ggcaaggggc cacggactca ggccagaaat ctgtatgaga tgtggaggaa cgggacatgc       900
     cacgagagca tgcggcaacc cgcctaggct attctgctgg gtatgcggaa agaacgagaa       960
     gaggacaacg gagtgttgta gagcccggtc ggaaaacgac aggaggcttg agcatgtgac      1020
     gctggcagct caagaccgaa cacaaggacc ggcgggagga gagtggataa gctacgatgg      1080
     attccaggcg acggcagagg taagaatcgg aacaaggagg gcgaagggaa tagtagacac      1140
     cggggcgtca agaagcgtaa tcgacaggag gagataccaa aacttgagga agcagggtag      1200
     gtggaacgag gcgggggagg aaataaccct ggcaaacggg acaagacaaa aggtcatagg      1260
     gaacttcacc acgctcgtcc ggttcgggag cgagcgattc gagctaagtt tcttgatcct      1320
     ggaccaggtg acaggaggaa tgctgcttgg gatggacttc ttggcaaaag taggaaccat      1380
     aatacgatgc ggccaccagg aaatagccat cagagagcct caggaggaac cgaaacggaa      1440
     acagcgggaa gaagcgggga taaaaacgga gccatccgac gaggagatcc agacgttcct      1500
     ggaggaccaa atgatggtgt ttgagaggat gaagggatgc agtacgatcg caacgcacac      1560
     aatatacatg aaggacgaaa gaccggtgaa gcaacgctat tacccgcgca acccaaaaca      1620
     gcaagccatt ataaacggac aggtggatga acttttggac caggggctga tagaaccctc      1680
     gcgaagctcg tacagcgcac cggtagtctt ggtacggaag aaaaacaacg aatggagaat      1740
     gtgcgtggac tacaggttgc taaacgagaa aacggaaaaa gacgcatacc cggtaccaag      1800
     gatggatttc atattgaacc aactccggga ggccaagttc attagcacaa tcgatctgaa      1860
     ggcagggtat tggcaaatac ctatggacga ggatagtaag caatacacgg cgttcacggt      1920
     accgggacga ggtctgttcc aatggaaggt aatgccattt ggtctcacca cggcaccggc      1980
     aacgttccag cgagccctgg ataccatcat agggccagaa atggagccgt tcgcgttcgc      2040
     atatctggat gacatcgtgg taattggaag gaataagcgg gagcacctgg agaagctgca      2100
     ggaggtgttt aggaggctcc aagaagcgaa cttaaagatc aacgcaggaa aatgccattt      2160
     cttccagaaa gagctgaggt atctgggaca tatcgtgacc gatcaaggaa tacggacgga      2220
     cccggataag gtggcagcca taagggaatt accaacgcca ggcacaacaa ggaggtccac      2280
     agctttttgg gaatggcgtc atggtacagg aaatttattc cggggttctc ggaacaggcg      2340
     gacccgctcc aggagctaat acggaagggg agaaaattcg actggcaacc tcggcaccag      2400
     gcagcatttg atcaaataaa gaccagctta acgcgggcac cagtgctggc ttgcccggat      2460
     ttcactaggc agttcgtatt gcaaacggac gccagtgact tcggggtagg ggcagtgctg      2520
     acgcaggaga gcccagaggg ggaacgagtg atagcatatg cgagcaggag gttgaaccaa      2580
     gcggagcgga actacagcgc cacggagaag gaatgtctcg ccatatactg gagcatccac      2640
     aagtacagga tgtacttgga gggctacaag ttcgtagtgg taaccgatca tcaggccctc      2700
     agatggctga attcgatcga aagtccctca ggtagagtgg caagatgggc attaggctta      2760
     caaccgtttc aatttgaggt aagataccgc aaggggaaac taaacgccgt ggcagacgca      2820
     ttatcacgcg cgccgccagt cgagataaaa atggcaagaa caggacagga atggctggag      2880
     agaaatacga ggaatgccag aagaacccag gaaacgagga atataggatc gagggcggca      2940
     gattgtacaa gcagggcacc aaggagagag accctaaccc ctggaagctg tgcgtcaccg      3000
     gagaagaagt acaakcggtg ctacgagaga accactgcca ggagacggca ggccacctag      3060
     gaatattcaa aacactcagg agggtcacaa agcagtattt ctggcctggt atgaagaagg      3120
     acatcgtgaa cttcgtgaag gcgtgcgaga cctgtcagcg gtacaaggca tcgcaacaac      3180
     agcggcggga cagatgctga caaggatcgc cgaggccccg tgggaaaccc tgtgtgtgga      3240
     ttttgtgggc ccactaccaa ggacacggca cgggaatact attttagtag tgatcgtgga      3300
     taaattctcg aagtgggtgg aattaacggc ggtacgacag gcaacggcag acacgttcct      3360
     gaaggtattc cgggaaaagg tcatagcaag ggttggagcc ccgaagatcc tgatatcaga      3420
     caatggggtg caattcaccg gaaggaagac caaggcagcc atggagcact ggggaataag      3480
     gcagcagttc accgcgccgt acacaccgca gcagaacccg accgagcgca cgaaccgcac      3540
     agtaaagacc atgatagcgg agttgacagg aggggaacaa accagatggg acgagaacct      3600
     gccggagtta atgctagcta taacagcagc acctcggagt caacggggca tagcccggca      3660
     caattgctct atggaaaaga gctgcgtctg cccggagcgc tgttcgacaa agtcacggaa      3720
     ggctccggtc ttgtaataga atcggttccc gacagatggg agagactgaa gaataccagg      3780
     tcggaagctt acaggaacat ggaagacgca gcggaaaacc agaaacggca ctatgactta      3840
     cggaaaaggg tatggaagcc cagaataggg caattagtgt ggtgcagaac acacttccta      3900
     tctagcgcgg cagacaagtt taacgcgaag ctggcgccaa aatacgacgg gccatgggag      3960
     gtacggggat ttccatcgcc ggtaatcgcg gaattaagga agcaaggggg cacgaataaa      4020
     aaacgggcat acgtggggga tttaaaagaa tatcaaaata acactaaccc gatcgaagca      4080
     aatcccaata accctagtaa ccaaacttcc gctctcatcg ttacagacaa aatggacaga      4140
     ttcgagaggt caaaaaagcg gttcagggag cacagcgccc agctgcagcg ggccgcaaag      4200
     aggcaaaagt aataccggcc cgggccgccg gtccggagat aaggatccgg acggcgccca      4260
     cccgcttggg gatccggcgc aaggcgcccg aagaacgaag cccggcgggc gaagagcgac      4320
     cacgcaagca acgaggcacg gagactcccc ggaccgagac gtactacagt gttgcgtctc      4380
     ggaaggttcg gggggagaga ccgccggccc accccagggg aggagacgat ggcgaatgac      4440
     ttggggtgga cggtcccaac aggggtcgtc ctcctgccag ccacggtgga acacatactg      4500
     gagcgatgga ggaagaagcc gcggggcaaa cagcagagcc tgttggtgcc ggaaggggca      4560
     gtaacgtgga atgtgctctt cggcagaggc cgaagggtca ccatccgccg ggcgacccgg      4620
     aggcggcaag aggaggcccg acagcccagc accacaggag gtcagctgcg agggccgaca      4680
     tgagggacgt cgtgtgggag atacacgcgg gagtcaacct gctgccggcc acccaggcgc      4740
     acatccggga gcgctgggcc gggctacggt tcgggcagca ccgtagcatc ctggtgccca      4800
     acggagggac accctgcagg tcatcttcgg gcgagggcgc cggatcatga tcaggccgca      4860
     cacgccagcc gctaacaaaa aggggggg                                         4888
//
ID   Gypsy-8_DEu-LTR repbase;    DNA;    INV; 1447 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   17-DEC-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DEu_;
KW   Gypsy-8_DEu-LTR; Gypsy-8_DEu-I.
XX
NM   Gypsy-8_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1447
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 864-864 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1447 BP; 331 A; 453 C; 339 G; 324 T; 0 other;
     tatgacgccc ggggcgcata aagttgaaat aatgaataat attaggaaag taagaatagc        60
     cgtaaggaca atcatggagt ctataggata gttcgtttta tagttataag tagaaaaaac       120
     actgaagtac tcgttttgtt aagttgatta gttaaggata aataaataag atttgaattt       180
     gaatgcgcgg gcgcgcctta gtaaaccacg atcggtcaca ctgccgggcc gaacgggcac       240
     accacataaa gggatttccg ggaacgggca cactgactgc agccacgggg tatataagga       300
     ggaccggttt ctgggaagag tcacttttgc ggtggatctc acccaggtaa gatcagccct       360
     ctcccgcagt tgggcaccct caccagcact agtcactttt tggtcggatt tagcctaggg       420
     ctaaatctaa tacattcgac ctcggtcata ccgagggagc actgccatcg gccactcgcc       480
     gatgcttgcc cgcagcagat ccactggatc actgccggca ctctcgcaac agcctcacca       540
     ggctttgcat ttctcacgcg tcggacccca agggcctcgc gtcatctctc gcaagagtcc       600
     cacggggcct tgcatctctt acgcgtcgga ccccacgggc ccgcgtcatc tctgtgggtc       660
     ggatttagct ggggctaaat ctaatacatt cggcctcggt cataccgagg gagcactgcc       720
     atcggccccg ctcccgcagc aggtccacgg atcacgctct ctcgcaagag cccacagggg       780
     ctttgcatct cttacgcgtc ggaccccaag ggcctcgcgt catctctcgc aagagcccac       840
     aggggctttg catctctcac gcgtcggacc ccaagggcct cgcgtcatct ctcgcaagag       900
     acccacaggg gctttgcatc tcttacgcgt cggaccccaa gggcctcgcg tcatcatctc       960
     acccgagacc cactgggttt ccattcactc tttctcatac cgaaccccag ggttcttttc      1020
     tttctttctt tacattcaca ctcgctcgcg tgactggccc tcgggccgac acacgctcca      1080
     tcatttctat tcttctttcc ctttcttagc tagcggatca ccaagacggc ctggccctgt      1140
     ccccacgcgg catccccacg gcccacgacg gagcatcgga cgcccggcta ccccccttcg      1200
     gaagctctcc ctcccaggcc cgcagaccgc ccacggcgac gaccagccga tccctgtgaa      1260
     ttaactctgt aaccatagat atgaaataaa caactaagat ctgttctatc cttaaccaaa      1320
     acaagctgcg tcttactctg ggtggaatct tctttgcagc aaccacgcct gacatcaaac      1380
     taaatgttgg aacgaactgc tggtatccgg tgaactgtcc cagccacccc aaagcaggac      1440
     cgttaca                                                                1447
//
ID   Gypsy-8_DFi-I repbase;    DNA;    INV; 5217 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DFi_;
KW   Gypsy-8_DFi-LTR; Gypsy-8_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5217
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 903-903 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [2611-3117] - Reverse transcriptase
CC   Positions [4177-4518] - Integrase core
CC   LTRs are 91% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2341..4518
FT                 /product="Gypsy-8_DFi-I_1p"
FT                 /translation="MSLTIKEMLSINYMDGEQTDYICGAIDNQGLNRQLRE
FT                 IIEHNYIRVEKPKEPFIRSEIKLTLENTKPFSCAPRRLAYAEKEKLQKLLD
FT                 DYVKDGIIQPSESEFASPIVLVKKKTGDIRLCIDFRKLNKVLVKDNYPIPL
FT                 IDDLLDKLVNKRVFSKLDLKNGYFHVYVNKESIKYTSFVTPLGQFEFLRMP
FT                 MGLKTASAVFQRFINKIFDDLIRSNKVIVYMDDIMIASKDTNEHLQILKEV
FT                 FFRLAKNKLELRMDKCEFLQTSVKYLGFIINGEGIRADDKGIEAIKNFPIP
FT                 DKTQSVQSFLGLCSYFRRFIKDFSTIAKPLYDLLRKDEKFQFGEKQMICFE
FT                 TLKEKLVEAPVLAIYNYKDEVELHCDASSQGFGAVLFQKKEDGKLHPIFYF
FT                 SKRTTVAESKYHSFELETMAIIHALRRFRIYLFGRRFKIITDCNSLTLTLN
FT                 KIELNPRIARWALELQSYDYELIHREGKRMQHVDALSRCTNILVVETNTFE
FT                 DNLVICQAKDPKIQRIKKQLEENEHKLFEMRNGIIYRKNNDGRLLFYVPTD
FT                 MEEHVLYKYHNEIGHIGRDKMLEAISKSYWFPNAKDKCLSHIENCLKCVAF
FT                 SPKTGKEGLLHCIPKGDKPFQLIHIDHYGPVDSGRSKKHIFVIVDGFTKFV
FT                 RLYTTKTTNSKEAITALKDYFRAYSKPKCIISDRGSCFTSREFDEFLSEFE
FT                 VKHIKIATGSPQANGRSKESTEVLDQ"
XX
SQ   Sequence 5217 BP; 1864 A; 927 C; 1132 G; 1290 T; 4 other;
     gagatgtata gtcatctctc tcgttctcat aacatagaat agaataagtt taagtttaag        60
     atcatgtatt gcgagctcgc tcacgcggct gaacgaggag aagaaggaag agagtaaaaa       120
     ggcattcagt gcctggcgat tgaaaggagc ggttggwtat ataataaagt tattcaaatg       180
     aagcacgacc tcgacattat ttaactgcta caatatcaga agtggttctt actcacaatg       240
     cctgacacag atctaagtca attcactgtg gttcaattaa aagatggtta agagtgcttg       300
     ggctgcgaac ctcgggctca aaagccgagt taatggcgcg tctgcaggca tattctctgg       360
     aagcgcgtgg cgaccctcca agcgagacag cagagcatca agagcaggca ctagctctag       420
     aactgagatg gatgaagccg agtcacaccg ctmcaaccag aagaccaaga cgtagaggaa       480
     attttgatca acccgtactc gacgacggca caggcagtgg acggcatcgg catggagcag       540
     ctttccgtta tcgaggtcga aaaaagctac gttgcagaag attcgagacg aaatcgaagc       600
     aaacaaggca gtgttaataa aaatccaggc cgagatcgct ggcgccaaca aagacaagct       660
     agttcatgtc cagcagaacg acgacgacgg cggcagaaat accgagaacg acggcgacgg       720
     cggcagaaac tccccgaacg acggcgacgg cggcagaaac tccgagaaca acggcgacgt       780
     cggcagaggc ttcgagaaca tcgacacccc tttcagtgcc agtgttggaa agaaaacggc       840
     agacagtgag gatcaacgcc aaatcgcaaa tgtaaacaaa cgttcagaat cttttacagc       900
     ctcgcttgca ttagcaaaag aagtcacaat ggattacgac ggtaactggt gcgcccgaaa       960
     atgggtcaca caattgcgaa acattgctaa agtgtatgat ttggatacct cgggtgtgcg      1020
     aatgcttctc attgccaaac ttaaaggaaa ggcccaaatc tggctgcacg caaattgcac      1080
     acgtattttg gagccaagcg atcgtctgtg tgagcagcta atcatggcgt ttggaacgaa      1140
     gatgtctaaa ggggaattta gaaataaatt ccaaaatcgt cgttggagtt caggtgagcg      1200
     gttctccgac tacttcgagg aaaaaatcat gctggcgaac gacatcgaca tcgacatgga      1260
     ggaacttctc gagagcatca tcgaaggaat tcctgttcag ggactgcgcg accaggctcg      1320
     catccaatgc ttctccgagc ctatgcagat ctgcaagcct tctcagggat tcgcttgccg      1380
     gagcagaagc agatcggcag ttcttcgcaa cgtccttcgg ataaaaaagc tgatctgcgt      1440
     tgcgctaatt gcaactcgaa ggggcacttc gcaaaggaat gccgtaaacc aaaaagggag      1500
     tcaggatcct gctatgcgtg tggaaagttc ggacacttcg tgggacaatg cccggatcga      1560
     aagagcgcaa atacaagtaa caattacgta agatacttta gaattttttt taacaacagt      1620
     tttgaagccc cattaacgca gcatgcctca tagacacagg gagtcctatc tcatttgcca      1680
     agaaaagcgt tatatccact aaagttaaga aggagatagt ttctgaaaac tacttcgggc      1740
     tgaacggaag ccaactgaaa atatttggga aaattttatg ttatacatta aaagaaagag      1800
     taaaatgttt ttttcacctt tacattgtcc ccaacgagtc tatgagtcat gatgtggttc      1860
     ttggaagaaa ttttctggat gcttgcaatt tgaaattgga tctgaatact ttgaagatgg      1920
     ttacggttga gcctgaatat accgaacgta tcttaacgac gaataattat gtgaattctg      1980
     atcttagtga attagtacaa aaagttattg aaacagttag tgatacagtt agcgaataca      2040
     gattagtgaa acagttagtg aaacagttag tgaaacagtt agtgatacag ttagtgaaac      2100
     agttagtgta cagttagcga aacagttagt gatacagtta gtgaaacagt tagcgataca      2160
     gttagcgaga cagttagtga cacagttagt gatacagtaa gcgaaacagc cagggataca      2220
     gttagagaaa tagttagtga tacagttagt aaagcaatta gcaaaacagt aaataatwca      2280
     gatagagata aaggtttaat accggttagt aaaatagaag caaaccaaga agaaaatttt      2340
     atgtccctaa ckattaaaga aatgttaagc ataaattata tggatggcga acaaaccgat      2400
     tacatatgcg gcgcaattga taatcaaggt cttaaccgtc aactgagaga aataattgag      2460
     cacaactata ttagagtaga aaagccaaaa gaaccgttta ttagaagcga aataaagctc      2520
     acgttagaaa atacgaagcc ttttagctgt gctccgcgac gacttgctta cgcagagaaa      2580
     gaaaaactgc aaaagttatt ggacgactac gtaaaagatg gaatcataca accgagcgag      2640
     tccgaatttg cttcccctat agtattagta aaaaagaaaa ccggggacat aagactctgt      2700
     atagacttta gaaaactgaa caaggttttg gttaaggata attacccaat accccttatc      2760
     gacgacctac tcgacaaatt agtaaacaaa agagtgtttt caaaacttga tctgaaaaac      2820
     ggctattttc acgtttatgt caataaagaa tctatcaaat atacgtcctt tgtaacacct      2880
     ttaggacaat ttgaatttct taggatgcca atgggtctga aaactgcatc ggcggtgttt      2940
     cagaggttca taaacaagat tttcgatgat cttattagaa gcaataaagt gatagtatat      3000
     atggacgaca ttatgattgc tagcaaggac accaacgaac atttgcaaat cttaaaggaa      3060
     gtgtttttca ggttagccaa aaacaagtta gaattgcgaa tggataagtg cgagttccta      3120
     caaactagcg ttaaatattt aggatttatt ataaatggcg aaggtattag agctgacgac      3180
     aagggtatag aagcgattaa aaattttcct atcccggaca aaacacagtc cgttcaaagt      3240
     tttctcggtt tatgttcata ttttcgcaga ttcattaagg atttttcaac aatagcaaag      3300
     ccattatatg accttttaag aaaggatgaa aagtttcagt ttggagaaaa gcaaatgata      3360
     tgttttgaaa cacttaagga aaagctggtg gaggcaccgg tgttagccat ttacaattac      3420
     aaagacgagg tagagttgca ctgtgatgct agttcccaag gctttggagc cgttcttttt      3480
     caaaaaaagg aagacggaaa actgcacccc atattttatt tttccaaacg cacaaccgtc      3540
     gctgaatcga aataccacag tttcgagctc gaaacaatgg ctatcattca cgcacttcgc      3600
     aggtttagaa tatatttatt tggtcgacgt ttcaaaatta ttaccgactg taattctctc      3660
     acactaacac ttaataagat tgaacttaat ccacgcattg ctagatgggc tttagagctt      3720
     cagagttacg actacgagtt gatacatagg gaagggaaaa gaatgcaaca cgttgacgct      3780
     ttaagcagat gtacaaatat tctagtcgtg gaaaccaaca catttgaaga taatctagtt      3840
     atttgccaag ccaaggatcc aaaaattcaa agaataaaaa aacaattaga ggaaaatgag      3900
     cataaactct ttgaaatgag aaacggaata atttatagaa aaaataacga cggtagattg      3960
     ttattttacg tacctacaga tatggaagag catgtactct ataaatacca caatgagatt      4020
     ggtcatatag gcagagacaa gatgttagaa gctatttcga aaagttattg gtttcccaac      4080
     gccaaagata aatgtttaag tcatattgaa aactgtctca aatgtgtagc attttccccc      4140
     aagaccggca aagaagggct tctacattgt attccaaaag gtgacaaacc ctttcaacta      4200
     atacatatcg atcattatgg cccagttgat tcaggcagat caaagaaaca catatttgtt      4260
     atcgtcgacg gtttcacgaa atttgttcgg ttgtatacaa ccaagaccac aaactcaaag      4320
     gaagctatca cagcattaaa agattatttt agggcataca gcaaaccgaa gtgtataatt      4380
     tcagatagag gaagttgttt tacttctaga gaatttgatg agtttttatc agaattcgaa      4440
     gttaagcaca taaaaatagc aacgggatcg ccacaggcaa atggcaggtc gaaagaatca      4500
     accgaagtct tggaccaatg atagcaaagc taatcgaacc agaaaaaggc atatactggg      4560
     acttggtaat agacaaagta gaacatgtgt taaacaacac acagcaccgc agtattaaac      4620
     aaactccaag cgaaatgtta ttcggtttag aacaaagagg acaattggta gacgaactaa      4680
     aagaaaaatt agaagagtta gacaatgcag aagaaaatag gaatttggaa aaggttagag      4740
     aagaagcaga aaaatgttta gaaaaagcac aaacgtacaa caaaaagcaa tatgataaaa      4800
     cagccagaaa accgtccaag tacaaaatag gagattatgt aatggtaaaa aatttcgata      4860
     gcacgacagg cgtttcaaga aaactgattc caaagaataa aggtccttat gtaattgcaa      4920
     aagttttaag aaatgacagg tttctgttaa aagacgttga gggatttcag gtatcacgca      4980
     atccgtacca aggggtctgg agcgtttcaa atatcaagca ttggatagga aacaaaaata      5040
     gataaattgt acaagaaatt aattattgtc aaattgttaa atgaaaaaaa aaatgttagc      5100
     ataaggaaat actaccctaa tataatataa tataagataa attaattgtg atataaatta      5160
     taaatgtatt tctacgctca cagtgatcag gggatcatac agtcaggatg gccgagt         5217
//
ID   Gypsy-8_DFi-LTR repbase;    DNA;    INV; 107 BP.
XX
AC   .
XX
DT   21-JUL-2011 (Rel. 17.06, Created)
DT   21-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DFi_;
KW   Gypsy-8_DFi-I; Gypsy-8_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-107
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 904-904 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 107 BP; 36 A; 22 C; 22 G; 27 T; 0 other;
     tgtagtagga tgtttaccta caatacccac tgtaccacat gtagtaggat gtttacctac        60
     aaggcccact gtaccgtgca tagaataaga attagagata gagacca                     107
//
ID   Gypsy-8_DHyd-I repbase;    DNA;    INV; 7103 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-7103
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2413-2413 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           964..2418
FT                 /product="Gypsy-8_DHyd-I_1p"
FT                 /translation="MANEHNLIRPPVLGEQPQVGGQNVDRQQQRRIDRQNE
FT                 HLQNRGMANNAEQQIATTVAQILAAQLPTLVKQLVNPSREFNDVADQNIVG
FT                 DQNLNDLNRVPDIVKSLREFSGDKAEFSSWKKSVDRILSIYASQVGSPTYY
FT                 GILHTVRNKIVGNADTALESYNVPLNWNAISKCLTLHYADKRDIGTLEYQM
FT                 TMLIQGHNQTVEQFYQIVYNHLTLILNKVGCMELNREAETLMTKMYREKAL
FT                 DTFIRGLRGDLSRILCIKEPADLPSALHYCLKLENQSYRTNIAFNKIHQTG
FT                 HKNAARSAPPPMLPPRMAQYPQNPPQTMRTVPIGFRTQVPMQSAWPNNNNN
FT                 VHQYNKPHFHQMQPQRTYIPPRPLAPKPQPRPEPMDVDQSIQTRMVNYMNR
FT                 PKFETGKRPPPLANPTDKRQRNFNIQTIEEWPDYDNSDASWNMEEYGQTIE
FT                 TYEQQQTEYEQSLQEYTDEIEQIENEQGNATEQADINFLG"
FT   CDS           5579..7063
FT                 /product="Gypsy-8_DHyd-I_3p"
FT                 /note="env."
FT                 /translation="MVTVQPIEPNMDITNHTEAQTITIHDGLGKIQTTTTR
FT                 IIHIFNLNKIKEALEQIEFHTEKDLKFSSLYHTLCHEINQTQLTLRTIDYD
FT                 VNKRTSRAINILGTAWKYVAGSPDHDDFVQIEEHINKVIDNNNRQVIINSQ
FT                 LEQRLNKLTTITNSLTNNIRKDDRFTYEIAESLQNQVRLIKEEVINIKYAI
FT                 QWAKVNVINSYLLKEAEVNEIERIFKAGRMPSLSVEEMLEYSDVAIFHNTT
FT                 TLFYVIKIPNVEETEFENLIVKPVIRNNVIINIEYKEILSHKNVMYGIIKS
FT                 CKKYNKIKICSKNNIVNISNSTCLPRLLNGEKSLCEFSNAEHVEPIDELAN
FT                 GLLMLNNFNGMVTSDKKSTWLNGTYVIRFTNESISIGNRTFSNLETNTLRV
FT                 GSSIIQMTPEESRRLQILSLKALQALHLNNSQILEKLKLTTHAVSSVILIC
FT                 IVAITIVIAYLYTKRARKITLLLDNNQVNKVTEAPRRTIENIQFNDIPFF"
FT   CDS           2259..5549
FT                 /product="Gypsy-8_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="RFLEYGRIRTDHRNLRTATDRVRTITARIHRRNRANR
FT                 KRTGKRHRTSRYQFFRITNSSLPYIECKTTSGEVLKILIDTGSNRNYIQPK
FT                 LVSNPIPNKKPFEAVTVGGNIKITHHKIANLFNRQDIQVKFFLLPTLKAFD
FT                 AILGNDSLKELDAVIHSSKNQLIIKKNMSITLRQKKIEAVNTVIPRTDHMT
FT                 IEQKQRLNQLVTKYPNLFATPNEKLTYTTNVKAEIRTKTDSPIYSKFYQFP
FT                 MSLKDEVHRQIQELLEDGIIRPSRSPYNSPVWIVPKKLDASQQKKYRMVID
FT                 YRKLNKETIADKYPIPEINEVLAQLGNNKIFSVLDLKSGFHQIPLKEADIE
FT                 KTAFSVNNGKYEFTRLPFGLKNAPSIFQRALDDILHEHIGKICFIYIDDII
FT                 IFSKDNESHSRNLDKIFKTLQEANMRCQLDKCEFFKNKVEFLGFVISDKGV
FT                 ETNPQKVEAIIKYPLPKTLKDLRSFLGLSSYYRRFIKDFAKLAKPLSSLLR
FT                 GEDGRVSKNLSAKKLIYLNDEAVEAFNKIKNALVSNEVILHYPDFGKEFHL
FT                 TTDASNFAIGAVLSQNRHPITFLSRTLSKAEENYATNEKEMLAIIWALKAL
FT                 KNYLYGKTKVKIYTDHQPLTHSLSSWNGNARIKRWKAYLEEFDYELLYKPG
FT                 RDNIVADALSRIPTINNIRSVASTQHSADSSSHNLIPSIEAPINVFKNQIF
FT                 LEKANKTDYRFYIPFPTFHRHIITQPSYTTNNLIQILKARLNPSVINGIIT
FT                 SEDVMHQIQTIYPIHFKNYKIRFSQSQVKDLTNETERDEKILATHNRAHRN
FT                 ALENRNQMIELYYFPKMKQTIADLVKQCQVCKEEKYDRHPNNPKLKETPIP
FT                 EYPGQIVHIDIYTTQKNLVLTAIDKFSKLAQGRVIKSRAIEDVKKPLHDIL
FT                 FYYGVPKAIVIDNEKSLNSDSLTFMMKDQLGIEIYKTPPHKSTVNGQVEKF
FT                 HSTLSEIMRCNRRKNEYKTFDELLNKSIYDYNYTIHSTTNKRPLDIFFGRN
FT                 VTTDPEQYEKARKDNIDRLKQKQTTDIHNHNKTRNDIRTYTPGQEIYIKIN
FT                 TRLGTKLSPRYKKAIVKEDRNTTVLTSTNLIVHKSNIKNV"
XX
SQ   Sequence 7103 BP; 2859 A; 1476 C; 1175 G; 1593 T; 0 other;
     tggcgcccga gcagggaccg acttcgcgcg caatacagca aaacgattag tacgtgcgtg        60
     atactgcaat ataaaagcag agtcggttaa agagtgaaaa ttcgatcgcg tctcaacaca       120
     gcaaaacgcc tgtacgaacg cgacggtgtg atctcaaaat ataaaaatcg gttaaaaagt       180
     gaaaattcga tcgcgtttca acacagcaaa acgcctgtac gaacgcgaca gataaaattc       240
     aaagccgatc aaagcagact gtgtgacgcg agagagtgac gatactctaa gtgcacgcaa       300
     ctgtaaaaga actgcagagt ctgtgcgaaa gtaaccgaag caactcacgt tgattaactt       360
     cgacgttcgg ttcgactcgc taaaggtagt ctggaactta attgttcgat tgcccatcgg       420
     tggacggtaa tcctgtacgg tcagtccaca ggatacttca acggtgtctg gtcgcaggat       480
     ccccagtagg aacaacccaa aaaggatgaa atccggacca gcagtgaaga ccgccacatc       540
     atcattattg taagttagaa atataagaat atcaaaaact aacaaaacta aaacaaccat       600
     taagaaaaga aaaacaattt aagaaaagaa aaaagtaaac ttaaagatta agagaataaa       660
     gaaaaaataa ataaagcaaa gaattaaaaa gcgtaaagcg ataaaattta cattgactac       720
     aaacgtagta taacataacc caactttgcg attcccaggg gaccctccaa agtagaaggg       780
     aaaaaccagc tactggtctt agaagaaaaa aattaaataa gtaaataaat tttatgcaca       840
     ttttgtaata aattaagctg taataatatt aatcctaaac taaccataca cttaatatct       900
     ataaaccaaa aataaattcc aaaatctgta gacataagta ccatagaagt cagtttgtga       960
     cgtatggcta atgagcataa cttgattaga cccccggttt taggagaaca acctcaggta      1020
     ggcggacaaa acgttgatag acagcaacaa cgacgcattg accgacaaaa cgaacactta      1080
     caaaacagag gcatggcaaa caacgcagaa cagcagattg caactactgt tgcccaaatt      1140
     ttagcagcac aacttccaac actagtgaaa caactagtta acccctccag ggaatttaat      1200
     gacgtagcag atcaaaacat agttggcgat caaaatctga atgatctgaa cagagtacca      1260
     gacatcgtca aaagcctcag ggaattctct ggtgacaaag ctgaattcag ctcatggaaa      1320
     aagagtgtag accgtatact ctcgatatat gcaagccaag ttggttcacc aacatattat      1380
     ggcatattgc ataccgtgag aaacaagata gtcggaaatg ctgatacggc cctcgagtcg      1440
     tacaacgtgc ctctaaattg gaatgccatc tccaagtgtc tcacactgca ttatgcagat      1500
     aaaagagata tagggacact cgaatatcaa atgaccatgt taatacaagg tcacaaccag      1560
     acggtagaac aattttacca gattgtttat aatcacctaa cactaatact gaacaaagta      1620
     ggatgcatgg aactcaacag agaggccgag accctcatga caaaaatgta cagggaaaag      1680
     gcattagata ccttcatcag aggtttgaga ggagatttgt cacgtattct ttgcataaag      1740
     gaaccagcag accttccctc agccctccat tactgcttaa agttagaaaa tcaaagctat      1800
     agaacaaaca ttgctttcaa taaaatccat caaacaggtc ataaaaacgc agctcgaagc      1860
     gcaccaccac ctatgttgcc acctcgcatg gcccaatatc cacaaaatcc gccccaaact      1920
     atgagaacag taccaatagg cttcaggacc caagtgccaa tgcagtctgc atggccaaat      1980
     aataataata acgtacatca atacaataaa ccacactttc atcaaatgca accacaacgt      2040
     acatacatac ctccccgacc attagcaccc aaaccacagc cacgtcccga accaatggac      2100
     gttgaccaga gcatccagac acggatggta aattacatga acagaccaaa gttcgagaca      2160
     ggcaaaagac ctccaccgtt agcaaaccca actgacaaaa gacaaagaaa tttcaatatt      2220
     caaacaatag aggaatggcc cgactatgac aacagtgacg cttcctggaa tatggaagaa      2280
     tacggacaga ccatcgaaac ttacgaacag caacagacag agtacgaaca atcactgcaa      2340
     gaatacacag acgaaataga gcaaatcgaa aacgaacagg gaaacgccac cgaacaagcc      2400
     gatatcaatt ttttaggata accaactctt cgcttcctta catagaatgt aagacaacaa      2460
     gcggagaggt actcaaaata ctaatagata caggttcaaa cagaaattac atacagccca      2520
     aactagtttc taaccccatt cctaacaaaa agcctttcga agccgtaaca gtcggtggaa      2580
     atataaaaat aactcaccat aaaatcgcta atctttttaa tagacaagat attcaagtca      2640
     aatttttcct attaccaacg ttgaaagcat tcgacgcaat tctgggcaat gacagtctta      2700
     aagaactaga cgctgtaatc cacagcagca agaatcaact aataattaaa aaaaacatga      2760
     gtataaccct tagacagaaa aaaattgagg cagttaacac tgttatacca cgaacagacc      2820
     acatgactat tgaacagaaa caaagactaa accagttagt cacaaaatat cccaatttat      2880
     ttgccacccc gaacgaaaag ttaacttaca caacaaacgt aaaagcagaa attcgaacta      2940
     agacagattc accgatatat tcaaaatttt atcaattccc aatgtcttta aaagacgaag      3000
     tccatagaca aatacaagaa ctcttagagg acggaattat tcgcccatcc cgatcaccct      3060
     acaattcacc cgtgtggatt gttccaaaaa aattggacgc ttcccaacag aaaaaatata      3120
     gaatggttat cgattatagg aaacttaata aagaaactat agcagacaaa taccctattc      3180
     cagaaattaa cgaagtacta gctcaacttg gaaataataa aattttctca gtgcttgact      3240
     taaaaagtgg cttccatcaa attcctctga aagaggctga cattgagaaa acagcattct      3300
     cagttaataa tggcaaatac gaatttaccc gactaccttt cggtctaaaa aacgcacctt      3360
     caatttttca aagggcatta gacgatattc ttcatgaaca tattggcaaa atatgtttca      3420
     tatacataga tgacattatc atttttagca aagataatga atcacattcc agaaatctag      3480
     acaaaatctt caaaactctg caagaagcca atatgagatg tcaattggac aaatgcgagt      3540
     tctttaaaaa caaagttgag tttctcggct ttgttatatc cgacaaagga gtcgaaacaa      3600
     atccacaaaa agtggaagcg ataatcaaat acccgctacc aaaaaccctt aaagacttga      3660
     gatcatttct gggtctctca agttattacc gaagattcat taaggatttc gctaagttgg      3720
     caaaacccct tagctcctta ttaagagggg aagatggacg tgtgtccaaa aacctatccg      3780
     caaaaaaatt gatttatctc aacgatgaag cggtagaagc tttcaataag ataaaaaacg      3840
     ctttagtttc aaacgaagtt attcttcact acccagactt cggaaaagaa tttcacttaa      3900
     cgacagacgc ttccaacttt gccattggag ccgtcttatc tcaaaatcgc catccaatta      3960
     cattcctttc tagaactctc tcaaaagcgg aagaaaatta cgctacaaac gagaaagaaa      4020
     tgctagcaat catttgggca ctcaaagctc tcaaaaatta cctgtacggt aaaacaaaag      4080
     taaaaatata cacagaccac cagccattaa cacattcgtt aagtagctgg aacggaaacg      4140
     ctagaataaa aagatggaag gcatacttag aagaattcga ctacgaatta ctttataaac      4200
     caggaaggga caatattgta gccgatgcgc tatctcgaat ccccaccata aacaatatca      4260
     gatcggtagc ctccacacaa cacagtgcag acagttcaag ccataactta ataccaagca      4320
     ttgaagcacc cataaacgta tttaaaaacc agatatttct ggaaaaggcc aataaaacag      4380
     actacagatt ctatatacca ttcccaactt tccataggca cataataact caaccaagct      4440
     acacaacaaa taatctcata caaatattaa aagctcgtct caacccttct gttatcaatg      4500
     gcataataac ctcagaagat gttatgcacc aaatccaaac catatatccg atacacttca      4560
     aaaactataa aattaggttc tcacagtcac aggttaaaga tctaacaaac gaaaccgaaa      4620
     gagacgaaaa aatcttggcc acccataata gagcacatag gaacgcactt gagaatagaa      4680
     atcaaatgat agaactttat tattttccta aaatgaaaca aacaatagca gaccttgtca      4740
     aacagtgtca agtttgcaag gaagagaaat atgacagaca tccgaataat ccaaaattaa      4800
     aagaaacccc aatacctgaa tacccaggac aaatagtaca catcgatata tacacaacac      4860
     aaaagaactt agtattgaca gcaatagaca aattttcaaa actcgctcaa ggaagagtaa      4920
     tcaaatccag agcaatagag gacgtaaaaa aaccacttca cgacatactc ttttactatg      4980
     gcgtaccaaa agcaatagtc atcgataatg agaagtccct aaactcagat tcactaacct      5040
     ttatgatgaa agaccaactc ggaattgaaa tttataaaac cccaccacat aagagtacag      5100
     tcaatgggca agtggaaaaa ttccactcga cactatcaga gattatgaga tgtaatagac      5160
     gaaaaaacga atacaaaact ttcgacgaac ttctgaacaa atcaatatac gattataact      5220
     acactataca ctcaacaacc aacaaacgac cactcgacat attttttggc agaaacgtga      5280
     cgacagaccc agaacagtat gaaaaagcta ggaaagataa tatagacaga cttaaacaaa      5340
     aacagacgac agacattcac aaccataaca agacgcgaaa cgatatacga acttacacac      5400
     ctggacaaga aatctacatt aaaataaata cacgattagg tactaaactt tcacctagat      5460
     ataaaaaggc aatagtaaaa gaagacagaa acacgactgt actaacatca acaaatctca      5520
     tcgtacacaa aagtaacata aaaaacgttt gacaaattat agattacttg taatactgat      5580
     ggtgacggta caaccaatag aaccaaatat ggacataaca aatcacacag aagcacaaac      5640
     tattacgatc cacgatggac taggcaaaat acaaacaaca acaacaagaa taattcatat      5700
     tttcaatcta aacaaaatca aagaagcatt agagcaaata gagttccata cagaaaaaga      5760
     tttaaaattt agcagcttat accatacctt gtgccacgaa attaaccaaa ctcaattgac      5820
     tttacgtacc atagactatg acgttaacaa aaggacctca agggctatta atatcctagg      5880
     cacagcttgg aagtatgtag caggcagccc agatcacgat gacttcgttc aaatagagga      5940
     acatattaat aaagtaatag acaacaataa taggcaggta ataataaatt cacaactaga      6000
     acagagacta aataaattaa ctacaatcac caatagcctt acaaacaaca taaggaaaga      6060
     cgatagattc acatatgaaa tagcagaaag tttacaaaac caagttagat tgatcaaaga      6120
     ggaagtcatt aatataaaat atgctataca atgggcaaaa gttaacgtaa taaactcata      6180
     tctattaaaa gaagcagaag ttaatgaaat agagaggata ttcaaagctg gcagaatgcc      6240
     ttcattatcc gtagaagaaa tgctagaata ttcagacgtg gccatatttc acaatacgac      6300
     tactttgttt tatgtaataa aaatacctaa cgtagaagaa acagaattcg aaaacctaat      6360
     agtaaaacca gtaataagaa ataatgtcat tataaatata gaatacaaag aaatattgtc      6420
     gcacaaaaat gtaatgtatg gaattattaa aagctgtaag aaatataata aaattaagat      6480
     ttgttctaaa aataacattg tcaacattag caatagtaca tgtttgccta ggctcctcaa      6540
     tggagaaaag tcgctgtgtg agttcagtaa tgctgagcat gtggaaccca tcgacgaatt      6600
     ggccaatggt cttctgatgc ttaacaactt taatgggatg gtgacatcgg acaaaaaaag      6660
     tacatggtta aatggcactt acgtaattcg cttcaccaac gagtccattt cgattggcaa      6720
     ccggactttc agcaatctag agacaaacac gctgagagtc ggatcatcaa taatccagat      6780
     gacaccggaa gaatcgagac gactccaaat tctatcgcta aaggctttgc aggcactaca      6840
     cctcaacaat agccaaatac tggaaaaact aaaacttacg acacacgcag tatcatctgt      6900
     aatattgatc tgcattgtag cgataaccat cgtcattgcc tacctctaca caaagagagc      6960
     tagaaaaata acgttactat tggacaataa ccaagtaaat aaagtaacag aggcaccaag      7020
     acgaacaata gagaacatac agttcaatga cattcccttc ttttaagaat cgcttgagga      7080
     caagctcgaa ttaaaggggg aag                                              7103
//
ID   Gypsy-8_DHyd-LTR repbase;    DNA;    INV; 378 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-378
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2422-2422 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 378 BP; 135 A; 91 C; 67 G; 85 T; 0 other;
     agttaataac gaaaataatt ccacattgca acaaaatcca atgggaatta ttgcaacaca        60
     aataagacat aacaaactcc ataagccaaa tctgctgaca ccacgtctag tggacttcct       120
     gcacgcgcca accagagctg cagtggactt cctgcacacg ccaaccagag ctgcagcaat       180
     tctaagaaga attgcacaac gggccaacaa caccacgagc gacgccgctg ccagcgccgt       240
     tgactgaacc acagcttagc tagggataga attgatttaa gttgtcagtt gccaaattca       300
     atttgaataa aacggacttg tttcgtccaa atcaaataaa atcttttttt tatcattcga       360
     agaaaagaag aatttaac                                                     378
//
ID   Gypsy-8_DMel-I repbase;    DNA;    INV; 6722 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6722
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1043-1043 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           681..1895
FT                 /product="Gypsy-8_DMel-I_1p"
FT                 /translation="MATGGSVPTLSAGGISSASNLTMELINRLINVQLSEV
FT                 TRKIEGIEGQLTANRNEVEDYKIQTIDRTIKCETTLEVIKSLPKFTGEITQ
FT                 YVGWREAAETAMSLYKIESEQYFIALTILRNKIMGAAHDALTNHGTVLNFQ
FT                 AILSRLDFIYSDKRPIHILESELSILRQGRMTITEFYNEVNKKMTLLINKT
FT                 IMTYGKDNVITKETNKTIRSNALRIFISGLNGSISETLFSLNPPDLPNALA
FT                 KCQELESNNFRAQFANRYNGFRNENKNQGNNLRFASRQNNITPNRINNNWP
FT                 QNENLGTNNNWNFNNNSKVQPPPEPMEVDNSIRVQNRPYKNYNRPRNNNSQ
FT                 WNYNNNRHNFNNNFQGNNYNQYPAIKRESTGTVNQPAQKTMRVNNINEGHF
FT                 LDQHPTEECLI"
FT   CDS           1886..5248
FT                 /product="Gypsy-8_DMel-I_2p"
FT                 /translation="MPHITRVDRKTKRPLKILIDTGATACYIKKGIYENKK
FT                 ELSIHKRVSTVHGYSIIKYYHLINIFGEQHLFYEIEGLESDLLVGFNLLRK
FT                 IGAKLDIEKGIMEYKGNKEKLEYFDEEKNDLCLIEGKNILPLKEYIIKKYF
FT                 DEQKVFKTETVIAEGSLYSSGSENPEHASVDLSANKQYISLGSKNPEQADD
FT                 VNSVIFKSNSLGSTNPEHAVVELSDKEKIHNLNITSNQIKDLENKVMNKIE
FT                 KEHSKINMQIPFRTDIRGEINTDNDRAIYSKQYPYAMSVSDFVNNEIDRML
FT                 KEQIIRPSRSPYNSPVLVVSKKGQNEDGSPKHRLVIDYKKLNESTIPDRYP
FT                 MQDPSVILSNLGKSKYFSTIDLESGFHQILMKNSDIEKTAFSINNGKFEFL
FT                 RMPFGLTNAPRIFQRAMDDILREQVGKTCHVYMDDIIIFSNTIEQHYTDLI
FT                 QIINILQKAHMKISLEKSKFFKLETAFLGYIVSHNVIKTDPEKISTIMKYP
FT                 IPQNIRELRSFLGLTGYYRKFVRNYAKIAKPLTKYLGGNNGKISRRMSTKI
FT                 KIQLDDPAVKAFNELKDNLIAQVELVQPDYNKKFTLTTDASDIAIGAVLSQ
FT                 DNKPITFISKTLNKTEQLYATNKKELLAIVWALKNLRNYLYGVVGIEIQTD
FT                 HQSLSFTISDKNPNVEMKRWYSFIESFTPKIIYKPGTTNVVADALSRIKIN
FT                 NITNSDIEQSSSDQNTQHSAESSFENVIQETRKPLNQFQQQLLLTKGRYTI
FT                 HESLNVFDKTRHIIEYDTPENLIEILREYLKPNITVGIHCTLEDLYHIQLP
FT                 LTNNFTNKFLYTKIFLQDVENNEDKAIIIEETHSRAHRGLDENYKQINRLY
FT                 YWPNLFIKLKEYIKNCTICNENKYNRHPIKIPIGEAPIPTKEGENLHIDIY
FT                 YAQSLIFLTCIDAYSKFLVVKEIQNKLNIENKVMELLQQFPHAKVIMTDNE
FT                 PSFTSVQFKSFAQRCGLTLHFADPRHSTSNGQVERAHSTLTELARCIKEEF
FT                 NLTDYSEIIIRAAKEFNQSIHSTTNQKPFDILYNKINHENISRILKNTQEK
FT                 MLVTHNEGRKEKEYHVGQVVYEKKHGERNKLKTRYKKQVVKENLPNKVIIN
FT                 NRNRTIHKDNIKF"
FT   CDS           5291..6721
FT                 /product="Gypsy-8_DMel-I_3p"
FT                 /translation="MHFLLLLIPFVMITTSEIIDYSNHEFFLFKDKKDVLT
FT                 YESYADLFHVTNLSFYKEIINLESGYVRKDTNIRTKWEITYEIQILKLILS
FT                 QLIPTRSKRGINELGTVWKWLAGTPDHDDFIKIQNKINDLIENNNQQFIIN
FT                 SKLFKEIKSLSDHFKNIFIDQELPLRKHRLRLLTFDLQNLIDTITLAKIDL
FT                 FNTQILNNEDIKEILDHEQQPVIIADLMDISIFKIVLHKELLIIYIKYPVI
FT                 TNRCEIYYARSISHNDGKLLISNQVAKCENTFYEISNFKNELFNNYCIISK
FT                 DKTCFTRLLNGEKSICTKILEKNKNIDIIQEGAILINGNNIVNDSHLNGSY
FT                 LITFNSTTTINNISYTNSENKILEYITTNHFKNLEISEYIKSNNSELSLDN
FT                 INILNPFIEIYNWKISISFILLILIILYFITMLILKFRNYIFVTKQKRPEL
FT                 EKPNNEVEFLTELNERLNEINNEAGRVILEGG"
XX
SQ   Sequence 6722 BP; 2821 A; 1110 C; 978 G; 1813 T; 0 other;
     gcccaacgtg gggcggcgta cttaaaagtt ctaaataaat attaacgaaa ataagttaat        60
     tacaaaacgg aactcgcgcc gccaacaact catattttta gtggaaaaat taaaacatcc       120
     acaacaatcc aacgacacct aactactgtg acagtgatcg tgaataaact taattggaaa       180
     tcaataaatg caataatcca attaagaatt taatataaaa ggtggactga atacttaaca       240
     ctaattacga gaacacaata ataaaaaatc agaactcaac tacaaacaca attaaaaaaa       300
     aaacaaacgt aaaaatcaac accaagaagg aaggaagagc tgaaggcaac cccccgccac       360
     agctagatac aaaattgaag gaagacccca ataaataata attaagacga cccaattgaa       420
     ggaagactcc aaaataatta agacaaacct attgaaggaa gaccccaaca gaagataatc       480
     aggacaacta cattgaagga agaactccca cggaaagtat cgtgagcaga taaaaaataa       540
     cactaagcct ttaaatagaa tctaaaaaat taagatcaag ataccgagag tactacaagc       600
     tttaaaatta aacattacaa tatttatttt aaaacaatct ggaaggttta ataaatagtt       660
     ttgaaaattt aaaattaata atggcaaccg gaggttcagt accaaccctt tctgcgggcg       720
     ggatatccag cgccagtaac ctgacaatgg aattaataaa tagattaata aatgtacagt       780
     tgagtgaagt gaccagaaaa attgaaggga tagaagggca gttaaccgct aacagaaatg       840
     aagtggaaga ctataagatc caaacaattg accgaaccat aaaatgcgaa actacattag       900
     aggtaattaa atccttacct aagttcacag gtgaaataac acaatatgta ggctggagag       960
     aagcggcaga aaccgcaatg agtctatata aaattgaaag tgaacaatat tttatcgcct      1020
     taacaatact acgtaataaa atcatgggag cagcacacga tgctctaacc aaccatggta      1080
     ccgttttaaa ctttcaagca attctttcaa gattggattt tatttatagc gataaaagac      1140
     caatccatat actcgaatca gaattaagca tccttagaca gggacgtatg accattacag      1200
     aattttacaa cgaagtaaac aagaaaatga ctttactcat aaataaaact ataatgactt      1260
     atggaaagga caacgttata accaaggaaa caaataaaac aattagaagc aatgctctta      1320
     gaatttttat ttctggatta aacggttcaa tctcagaaac actcttctct cttaacccac      1380
     cagacttgcc aaatgctttg gcaaagtgtc aggaactaga gtctaacaac tttagagctc      1440
     aatttgcaaa taggtataat ggatttagga atgaaaataa aaatcaagga aacaacctta      1500
     gatttgcctc tagacagaat aatattacgc caaatagaat aaataataat tggccacaaa      1560
     acgagaactt gggaacgaat aacaattgga actttaacaa taattccaaa gttcaaccac      1620
     caccagaacc tatggaagta gacaactcca taagagttca aaatcgtccg tataaaaatt      1680
     ataaccgtcc taggaataat aacagccagt ggaattataa taacaaccga cacaatttta      1740
     ataataattt ccaaggaaat aattataacc aatacccagc gattaaacgg gaatcaacgg      1800
     gaacagtcaa ccagccagct caaaaaacaa tgagagtaaa taatatcaac gaaggccatt      1860
     ttttagatca gcaccctaca gaggaatgcc tcatataaca agggtagaca gaaaaactaa      1920
     aagaccactt aaaatattaa tagatacagg agccaccgcg tgctatataa aaaagggtat      1980
     ttacgagaat aaaaaagaat tatcaataca caaaagagta tctactgttc atggatattc      2040
     aatcataaaa tattatcatt tgataaacat atttggggaa caacatttat tttatgaaat      2100
     tgagggtcta gaatctgatc tattagttgg attcaatctg ttaagaaaga ttggagctaa      2160
     attagatatc gagaaaggaa tcatggagta taagggaaat aaagagaaac tcgaatattt      2220
     tgacgaggaa aaaaatgatt tatgtttaat tgaaggaaaa aatattcttc cattgaagga      2280
     atatattatc aaaaaatact ttgatgagca aaaggtattt aaaaccgaaa cggttattgc      2340
     tgaaggcagt ttatatagtt cgggatctga aaatcctgag cacgccagcg tagatttatc      2400
     cgctaataaa caatatatca gtttgggatc gaaaaatcct gaacaagccg acgatgttaa      2460
     ttccgtcatt tttaaatcaa atagtttagg atccacaaat cctgagcacg ccgtcgttga      2520
     gttgtccgac aaagaaaaaa ttcataacct aaatataact tcaaatcaaa taaaagatct      2580
     tgaaaataaa gttatgaata aaattgaaaa ggagcattct aaaataaata tgcaaattcc      2640
     ttttcgtacc gatattcgag gagaaataaa tactgacaat gacagggcaa tttatagcaa      2700
     acaatatcct tatgctatgt cggtctcaga tttcgttaat aatgaaatcg atagaatgct      2760
     aaaagaacaa attataagac caagtagaag cccttacaat tcaccagtct tagtagtgtc      2820
     caaaaaaggt caaaacgaag atgggtcccc aaaacatcga ctagttattg actataaaaa      2880
     attaaacgaa agcacaatac ctgacagata cccgatgcaa gatccgtctg taatattatc      2940
     taacttaggg aagtcaaaat atttctcaac aattgatctg gaatcaggat tccaccaaat      3000
     tttaatgaaa aattcagata ttgaaaaaac cgctttctct ataaataacg gaaaattcga      3060
     attcttacga atgccatttg ggttaacaaa cgcccctaga atatttcaaa gagcaatgga      3120
     tgacatattg agagaacaag tcggaaaaac ttgtcatgtt tatatggatg atataataat      3180
     cttttctaat acaattgaac aacattacac tgatttaatt caaataatta atattttaca      3240
     aaaagcacat atgaaaattt ctctagaaaa atctaaattc tttaaattag aaacagcatt      3300
     tcttggttat attgtttctc acaatgtaat taaaacagat cctgagaaaa tttccacaat      3360
     tatgaagtat ccgattccac aaaacattag agagcttcga agttttctag gcctcaccgg      3420
     ctactaccgt aaatttgtcc gaaattatgc aaaaattgcc aaacctctaa ccaaatactt      3480
     aggaggaaat aatggaaaaa tttctaggag aatgtctaca aaaattaaaa tacagttaga      3540
     tgacccagct gttaaagctt ttaacgaact taaagataat ttaatagcac aagtggaatt      3600
     agttcaacct gattataaca aaaaattcac tttaacgaca gacgcatcag atatagctat      3660
     cggagcagtt ttatcacagg ataataaacc aattactttc atatccaaaa cattaaataa      3720
     aaccgaacaa ctttatgcca caaataaaaa ggaattgttg gcaatagttt gggctcttaa      3780
     aaatctcagg aattacttat atggtgttgt tggtatagaa atacaaacag accaccaatc      3840
     tttatcattc acaatctcag ataaaaaccc gaacgtggaa atgaaaagat ggtactcttt      3900
     catagaaagt ttcaccccga aaataatata taaacccgga acaactaatg tcgtagccga      3960
     cgcattatct cgaataaaaa taaataatat cactaacagc gatatagaac aatcaagctc      4020
     agatcaaaat acacagcatt ctgccgaaag tagttttgaa aatgtaatac aagagacccg      4080
     aaaaccgtta aatcagtttc aacaacaact gttattaaca aaggggaggt atacaataca      4140
     tgagtcattg aacgtttttg ataagacacg acatataatt gaatatgaca cgccagaaaa      4200
     cttaatagaa atactaaggg agtatctaaa accaaacata acggtaggaa ttcattgcac      4260
     tttagaagat ctttatcata ttcaattacc attaacaaat aattttacca acaaatttct      4320
     ttatactaaa atatttctac aagacgtgga aaataatgaa gataaagcta ttataataga      4380
     agagacacat agtcgagctc atagaggttt agatgaaaat tacaaacaaa tcaatagatt      4440
     atattattgg ccaaatttat ttatcaaatt aaaagaatac ataaaaaatt gtacaatttg      4500
     caacgaaaat aaatacaaca ggcatcctat taaaattcct attggggaag cccctattcc      4560
     aactaaagaa ggagaaaatt tacacatcga catttattac gcgcaaagtc ttattttctt      4620
     aacttgtatt gacgcgtatt caaaattcct ggttgtaaaa gaaatacaaa acaaactaaa      4680
     catcgagaat aaagtaatgg aactactcca acaatttccc cacgccaaag taattatgac      4740
     tgataatgaa ccaagcttta cctctgtcca atttaaatcc tttgcacaaa gatgtggttt      4800
     aactctacat ttcgcagacc ccagacacag tacctcgaac ggacaagtag aaagggcaca      4860
     ttcaacatta acagaattgg ctcgttgtat aaaggaagaa tttaatctta ctgactattc      4920
     tgaaataatt attagagccg caaaagaatt caatcagagc atccattcaa caacaaacca      4980
     aaaacctttt gatattcttt ataataaaat taatcacgaa aatatttcaa gaattctaaa      5040
     gaacacacaa gaaaaaatgt tagtaacaca taatgaaggt cgcaaagaaa aagaatacca      5100
     tgtaggtcaa gttgtttatg aaaagaaaca cggagaaaga aataagctaa aaactagata      5160
     caaaaaacag gttgttaagg aaaacttacc taacaaagtt ataatcaata atagaaacag      5220
     aactattcac aaagacaaca ttaagtttta acaaatacca tatttttttt attttattaa      5280
     attacagaaa atgcatttct tattacttct aataccattc gtaatgataa ccacttcaga      5340
     aataattgat tactccaatc acgaattctt cctgttcaag gacaaaaagg atgtccttac      5400
     ctatgaatca tatgccgact tattccacgt aactaactta agtttttata aagaaataat      5460
     caatctagaa tcaggatatg ttagaaaaga tacaaatatt cggacaaaat gggaaattac      5520
     ttacgaaata cagatactga aattaattct gtcacaattg ataccaacta gatcaaaaag      5580
     gggaataaat gagttaggca ctgtttggaa atggttagct ggaactccgg atcacgatga      5640
     tttcattaaa atacagaata aaataaatga tttaattgaa aacaataacc aacaatttat      5700
     tattaattcc aaattgttta aggagataaa atcactttcc gatcacttta aaaacatttt      5760
     tattgatcaa gaattgccgt tacgaaaaca tcgtttacgt ttattaacat ttgacttaca      5820
     aaaccttatt gatactatca cactagccaa aattgattta ttcaacacac aaattttaaa      5880
     taatgaagac attaaagaaa tattagatca cgaacaacaa cctgtaatta ttgcagacct      5940
     aatggacatc tccatattca aaattgtatt gcataaagaa ctcttaatta tttatataaa      6000
     ataccccgtt ataacaaaca gatgcgaaat ttactatgcc agatccattt cacataatga      6060
     tggaaaatta ctaataagta atcaggtcgc aaaatgcgaa aatacctttt atgaaatatc      6120
     taattttaag aacgaacttt ttaacaacta ttgtattata agtaaagata agacctgttt      6180
     tacccgttta ctaaatggag aaaaatcaat ttgcactaaa attctagaaa aaaataagaa      6240
     tatagatatc attcaagaag gtgccattct aataaatgga aataatattg tgaacgattc      6300
     tcatttaaac gggtcatatt taataacatt taacagcaca actacaataa ataatatttc      6360
     atacaccaac tcagaaaaca aaatacttga gtacattact accaaccatt ttaaaaacct      6420
     ggaaatatca gaatatataa aatccaacaa ttcagaactt tctcttgaca acattaatat      6480
     tttaaaccca tttattgaaa tttacaattg gaaaatttca atttcattta tattactaat      6540
     tttaatcatt ttgtacttca ttactatgtt aatattaaaa ttcagaaatt atatatttgt      6600
     aaccaaacaa aaacggccag aactagaaaa accaaataat gaagtagaat ttttaacaga      6660
     attgaatgag cgtttaaacg aaattaataa tgaagcggga cgcgtcattt tagaaggggg      6720
     ag                                                                     6722
//
ID   Gypsy-8_DMel-LTR repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-507
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1032-1032 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 507 BP; 187 A; 90 C; 77 G; 153 T; 0 other;
     agttatccaa cccataaaca tagcaccctt ccacagttta taaacaaatt tcaattctca        60
     atctcgtcgg catttccttt gtctttgttt ttgtcattgc ctttgccagc gcttagctac       120
     ccgctaaagt aaataaccca aacttaacgt aaacacagct tccgcttgga gaccaaacca       180
     cggccaactt attgcgcttc aatcaaaaac tgcatcgatc agcataattg aatttcacaa       240
     tgcagtggaa taatttcagc ataaagcttt tatcaaaagt tcagaaagtg tcaaagaaaa       300
     gcttctggcc gaggttgatt ggattaggat tcagaatttg aagatcagtc tgattcggga       360
     ggattaaaag aacggtttat aaatgtataa atagataaca ataagtgtct tgtaataaag       420
     tgataagttg aaaagtttaa caccaataaa aatattaaaa aataaaaaat tattttttta       480
     aataatttat accgcaaaaa gttaatt                                           507
//
ID   Gypsy-8_DMoj-I repbase;    DNA;    INV; 5887 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DMoj_;
KW   Gypsy-8_DMoj-LTR; Gypsy-8_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5887
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1277-1277 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [3831-4250] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..2177
FT                 /product="Gypsy-8_DMoj-I_2p"
FT                 /translation="MTLCQGNELLIQFGTSIVANEKVSGAAADYIRQLGME
FT                 PTWEQMKTKLMEQMRPKTTYEDVFDRCRFIKVSSLRELFLEFEKAKCEINK
FT                 IYMFDELKPTIYENDKVDRDLLNILINKIDTPFRIHVDQGISMHALQTKYS
FT                 NIKALDDPRAISQRYRKTTNNTHQKQNNANTNINTRTNTNTNTNTNTNTTY
FT                 NRPSQNSQPPNNNKNTGQTNQQPDNRPQPNQNQNPRPNYNNKNNGSRQTRM
FT                 SHMSVDTQGNDSTPMEIGTLEENQAEEVNFFDTLPRANLPIITWTIGKEEI
FT                 RCLVDTGATTSILKSKVLEQQYPKIELTRPCSYKTLNGVNIVKYAVTTPFP
FT                 KEIPYLGTLQWKLIDFPNENFSAIIGQNFLKAFKAQINNTERYVQLLDKKF
FT                 YFLDYEYPESMHNACALQPINIDHIRDRLNLEHLNDEERQAVEALLAESDD
FT                 LFFREGDVLSATNQISHEIITTVDRPLYSKIYRYPQIHEKEINRQIKEMLK
FT                 QNIIRESNSPYNSPLWIVEKKLDNSGSKKFRIVIDYRKLNEFTVDDRFPIP
FT                 NLNSLLDKLGR"
FT   CDS           4435..5886
FT                 /product="Gypsy-8_DMoj-I_1p"
FT                 /translation="MLKDLPNFQVIITIVIMILLPTLSAAMINITPILAEN
FT                 GFVSLGESTVELVNNSKMVLHIINTQEILELTNIIQNNTKILVKQNRHRLD
FT                 AEIETIRIKIRSITPNPLTRQKRGLVNVIGKTQKWLTGLMDDDDREIIMNH
FT                 LLNNQENEHNIIKNINEQVKINNDLQKSINTLKEVILDDREKITNTLNSIE
FT                 TFNNIIKTDIMYHDQLLKLKFLHDKVDTILDIIASAKYNLFHPSILTNEEF
FT                 TLYNIDFYKIKLIRMGVMTHENNIIIAIKIPTNIITTTIFLITPLTNQKNK
FT                 RIDMSPERVVKIENKTYTYEEHKTINELKLSSNCIIKNNCRMIEDVEFKMQ
FT                 LINEGTLLISNAENKIIQYNCNESTNNEILKGNFLVEFTNCTIFIDQTYYK
FT                 NNQEIYIQSFSDDGEEENSFNFTEKQTFKEIILEEIKNTKAIKEIRAQTII
FT                 SNSFGITSIALVLLFIGIYIYTKCKRGIQENPSSKGGGV"
XX
SQ   Sequence 5887 BP; 2431 A; 1194 C; 931 G; 1323 T; 8 other;
     aaaactataa ctggcgcagc cgaatccgaa caagtgcgtt ctgtttaacc gaagttaatc        60
     cgcataaaca aaaataaaac tgcaagactg caacgtatgc ataaaagagc gcaagcaaga       120
     atttgcttag ttaacgttgc cgacaaattt gtgcagaaat aaataaaacc gcaacagtaa       180
     actgattcgt gagttaacaa ttaactcaac aaagtgacaa ttttatgtac ccaaggtact       240
     caacgaacaa aagcatatcc acaaattcga cgaaaaccgc agaatcgaaa atacaattat       300
     ggaagaggag cttcaaaatc taagaggagt catactccag caagaagcag cgctaaaccc       360
     actcacgaca acaacatgaa caacaacaac aacaaccaag ccagtggttg tcgaacaaag       420
     atatcatcca gcaatttcgc caactacgac aactggatga tcaacatgat gtgttggcct       480
     tcattagatc cgttgaattc ctcatgacgc tatgccaggg aaacgagctg ttaattcaat       540
     tcggcaccag catcgtcgcc aacgaaaagg tctcgggagc agcagcagac tacatcagac       600
     agttggggat ggaaccaact tgggagcaga tgaagacgaa actaatggag caaatgcggc       660
     cgaagacgac ttacgaggat gtgttcgaca gatgcagatt cattaaagta agtagtttaa       720
     gagagctgtt cttagaattc gaaaaagcaa aatgtgaaat aaataaaata tacatgtttg       780
     atgaactaaa acctacaata tacgaaaacg ataaagtaga tagagatttg ttgaatatat       840
     taataaacaa aatagacacc ccattcagaa ttcatgtcga tcaaggmatt tctatgcatg       900
     ctctacaaac aaaatattca aacattaaag cactagatga tcccagggct atatcacaga       960
     gatatagaaa aacaactaac aacactcacc agaagcaaaa taacgctaac accaatatta      1020
     acacaagaac taacactaac actaacacta acactaatac caacaccaca tacaacagac      1080
     caagtcaaaa cagccagccc cctaataaca acaagaacac tggtcaaaca aatcaacagc      1140
     cagataacag accacaaccc aaccaaaacc aaaatcctag accaaattat aacaacaaaa      1200
     acaatggctc aagacaaaca agaatgtctc atatgagcgt tgatacccaa gggaacgatt      1260
     ccactcctat ggaaatcgga actttggaag aaaatcaggc agaggaagta aatttttttg      1320
     ataccttgcc tagggcaaac ctacccataa taacgtggac aataggaaag gaggaaatca      1380
     gatgcttagt cgacactggt gcaacgacaa gcatcttaaa atcaaaagtt cttgaacaac      1440
     agtacccaaa aattgaactc accagacctt gttcttacaa aactcttaac ggtgttaata      1500
     ttgtaaaata cgccgtaacc acacctttcc ccaaagaaat tccctactta ggaacacttc      1560
     agtggaaact tatagatttc ccaaacgaaa atttctcagc aataataggg caaaactttc      1620
     taaaagcatt caaagctcaa ataaataata ctgaacgata cgtacaatta ctagacaaga      1680
     aattctattt tttagactac gaatatccag aatcaatgca caacgcttgt gctctgcaac      1740
     ctataaacat agatcatata cgagaccgtc tcaacctcga acatttaaat gacgaggaac      1800
     gccaagckgt cgaagctcta cttgcagaat ccgatgatct attttttcgg gagggggacg      1860
     ttttgtcagc aacaaaccaa atctcccacg aaattattac tacagtggat aggcccttat      1920
     attctaaaat atatagatat ccccaaatcc acgaaaaaga aataaataga cagataaaag      1980
     aaatgcttaa gcagaatatt ataagagaaa gtaactcccc ctataacagc cccttatgga      2040
     ttgttgagaa aaaactcgat aattcagggt caaaaaagtt cagaattgtc atcgattacc      2100
     gcaaactgaa tgaatttacg gtcgacgaca gattcccaat tcctaatctt aattctttgc      2160
     tagataaact gggtagatga caatatttta caaccctcga cttagcgaaa ggctttcatc      2220
     aaattctcgt taaagaggag gacagaccaa agacagcatt ttcaacaccg tcaggtcact      2280
     acgagttcat cagaatgccg tttgggctca aaaatgctcc atcgacattc cagagactta      2340
     tgaacgaagt cttgaaagac tatattggcg aaaattgtgt cgtmtacmtg gacgacgtac      2400
     taatcttcag cacatccctt caagaacata tgaccacgtt aagaaaaata ttcaaaactt      2460
     taaaagatgc caatttaaaa atccaagtag ataaatgtga ctttctaaag aaggaaacgc      2520
     aattccttgg tcatatcttg accacacacg gcatcaaacc gaacccagat aaagtaaaca      2580
     ttattcagaa tttacaatta cccmgaactg caaagcagat taagtcgttc ctaggaatga      2640
     cagggttcta tagaaaattt gttaaagatt acgcaaaaat agcaaaccta tgacaagata      2700
     tctgaagaaa aacatgacaa tcgacaccga cgacccaagc tacatagcag catttgaaaa      2760
     gttaaaaaca ttagttacaa atagtccagt cctacgatac ccaaattttt ctaaaaagtt      2820
     cactatcact acagacgcca gcaatttcgc ggtgggagca gtcctttctc aagaaggtca      2880
     cccaatcksa tacgcatccc gaacgttaaa ccagcacgaa cgtaactatt caaccataga      2940
     gaaagagctc ttagccatag tgtgggccgt aaaatacttt cgaccatatg tttatggtag      3000
     agaattcaac ctcgwgagcg atcaccaacc attaaaatgg ctgatggcta aatatacagg      3060
     caaagacata agcccgagac tgcagagatg gctcatcagt ctgggagagt acaacttcca      3120
     catagaatat ataaaaggga aatgtaataa cgtcgctgac tttttgagta gaattagaga      3180
     ggacgaaata aacctaatgg aagttgaatc cacgaacgat gaagacaaca gatccctagc      3240
     agctcaaacg attcattcta aagaagagga tcagggtttc gacatgtcca tactagaaac      3300
     agcagttaac agattcaatg tacagctaat tttcacagaa aggaaactcg aaaccaccgt      3360
     acaggtgttc gacaaaaaga gaatttacat tagcaagaaa gacatagaag acaaccaagc      3420
     aataaacatc ctccgacgag aaataacaac aggaaaaata ggagtttatt cacacctaag      3480
     tgaccatgag ttctaccaat tacaaaaaat aatagcgaag gaatacactt ccaacccaaa      3540
     agtaaaattc gtaaagtgca cactaggttc attagggata ttgagtcgga agatgaactg      3600
     catacccaaa tagccttatt tcataaaaac gagagtggcc attgcgggat agttgccacc      3660
     tatcagaagc ttaaactcga aatataccac cctaacctat aagacccata tccatagaat      3720
     aatcaataac tgtgacgttt gtaatggtgg gaaatatgat agaaaaccta taaagaacaa      3780
     cttttatctt acagaaacac caagaacttg caatgagata gtacacgtag atacatacgt      3840
     taactcaaaa cacatccttt atactattca tcgacaaatt ctcaaaacac gccacttgct      3900
     tcccacttaa cgacagaaat agcgtcacaa tcgtagaaca cattcaacaa ttcttgtcaa      3960
     taaaagggaa ggtccataaa tttgtcttcg acaacgaatt taatagtctt aacgtcagag      4020
     aatttctaga aaaagaaggc atagaatacc atacaactaa accaaacagt cacactggca      4080
     atagcgacgt cgaaagactt aataacacac taacagaaaa aattcgcaca ctaaacatag      4140
     aagagaaaag accaataatc gaacaaatgg ctagagctgt atacttttac aataacacat      4200
     accacaccac cacgaaatcc acaccattcg aagtacagaa tcacaaagta gatcacttga      4260
     aattgttcga aaaaatgtca gcagaaaaat ctagaaaaat agcaaaacta aatgataaaa      4320
     gagaaaccta tatagagaat agaacagagg gatttattaa gaattataaa aacctaagac      4380
     ataaagaaga acccaaattc agaaaagcta atttacaaaa tattcataca acaaatgtta      4440
     aaagacctac caaatttcca ggtaataata acaatcgtca tcatgatcct gttgccaaca      4500
     ctgtcggcag caatgatcaa tataacccca atcctggctg agaacggttt cgtatcacta      4560
     ggggagagca cagtggaact ggtaaacaat tctaaaatgg ttctacatat aataaatacg      4620
     caagaaatat tagaattaac aaacataata cagaacaaca caaaaatctt agttaagcaa      4680
     aacagacata gattggacgc agaaatagaa accataagaa ttaaaataag atcaataacc      4740
     ccaaatccac taacaagaca aaaacgcggt ctcgttaacg ttatagggaa aactcagaag      4800
     tggctcaccg gcctcatgga cgatgacgat agggaaatta ttatgaatca tctcctaaac      4860
     aatcaagaaa acgaacacaa tataataaaa aacattaacg aacaagtaaa aataaacaat      4920
     gaccttcaga aatccattaa cactttaaaa gaagtaatac tagacgatag ggaaaaaata      4980
     accaacactc ttaacagcat agaaacattc aataatataa ttaaaactga cattatgtat      5040
     cacgaccaat tactaaaact taaatttttg cacgataaag tcgacaccat cttagacata      5100
     atagcgtcag ctaagtacaa cctctttcat ccctctatac taacaaacga agaattcaca      5160
     ctctacaaca tagacttcta caaaattaaa ttaatccgca tgggtgtcat gactcacgaa      5220
     aataacataa tcattgcaat taaaatacca actaacatca taacaaccac aatatttctg      5280
     ataaccccac taacaaacca gaaaaataaa agaatcgaca tgagtcccga aagagtggta      5340
     aaaatagaaa acaaaactta cacatacgaa gaacacaaaa caataaatga actaaaatta      5400
     agttctaact gtatcattaa gaataattgt agaatgatag aagacgtaga gtttaagatg      5460
     caattaataa atgaaggcac attactaata agcaacgcag aaaataagat aattcaatat      5520
     aattgtaatg aatccaccaa taatgaaata ttaaaaggta acttcctcgt agaatttaca      5580
     aattgtacaa tcttcattga ccaaacttac tataaaaaca atcaagaaat atacatacaa      5640
     tcgttttctg acgatggaga agaagaaaat tcatttaact ttacagaaaa acaaacattc      5700
     aaagaaatca tattagaaga aataaaaaac actaaagcca taaaagaaat cagagcgcaa      5760
     acaataattt ccaatagctt tggcataaca tcaatcgctc ttgtactcct cttcatagga      5820
     atatatatct atacaaaatg taaaagagga atccaggaga atccctcatc aaaaggggga      5880
     ggagtta                                                                5887
//
ID   Gypsy-8_DMoj-LTR repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 17.07, Created)
DT   02-JUL-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DMoj_;
KW   Gypsy-8_DMoj-I; Gypsy-8_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-511
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1278-1278 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 511 BP; 207 A; 88 C; 75 G; 141 T; 0 other;
     tgcaaccaat gcaaccaatg caaccaaata cgctcatgca aattgcacaa ccaattgcac        60
     ttgtgcatgg gaatgacaat aatgaccaac tcagcataat catgcagaaa tatttaaaaa       120
     gagatcagat tacaaaagca taaacaacgt aagcgtcttc gccgcttccg ttgtaaatgc       180
     ccagctagca acaacaaatg taagcaacgt atatataaaa taaagcaaca acaaatgtaa       240
     gcaacgtata ataaaataaa gcaacatata tatatatata aacaggcatt tgcatatgcc       300
     aagaaatact ttacagttag tcttaagatt cattccgaac agaacagaag tctttttatc       360
     aataaagcaa gaattataat atccaaagat attaagtgtg tttttattga actatcactc       420
     aacgtatatg aacatctaaa gacagttttg tttcagtgat taacagtttt tattgtgctt       480
     gtgtatctaa agatatatga agtatagtgc a                                      511
//
ID   Gypsy-8_DPer-I repbase;    DNA;    INV; 5638 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DPer_;
KW   Gypsy-8_DPer-LTR; Gypsy-8_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5638
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1516-1516 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           844..2358
FT                 /product="Gypsy-8_DPer-I_1p"
FT                 /translation="MPLSRSPENFAQIENQGIICSTCAKEVDYLAQLITTS
FT                 CGHQFHRVCFNRKAGAKKICPVCHVSLHASALNLAEEIAAAQTASQDPSST
FT                 MHQTRSKGRATDPNADAPSGSTVSETNSEVQMEANAASTNAGLHQVIADAL
FT                 AAAMQAQTHILAQTIETGLQKLSIQQTASRESIESVRSQPINTQTIDEVEQ
FT                 QTFQQLFGGSSERQTAREPPARYSLGGTPPVSELRADRISQIISNWKIRFS
FT                 GHSSIGVDDFIYRVNAMTNQSLNGNFELLARYASNLFEGSASEWFWRYHKS
FT                 VPLIRWSDLCVALKTQFKDGRTDLDIRSAITQRKQKPNEPFDLFYEAIVAL
FT                 ADKLVQPMTEPYLLEALKANLVPEIQHEILYVPIKSIAELRHIVRTRERFL
FT                 QNLSKSTTTLQRAASKRHINEMHQTFSETDDDADGVDDASIDAMTLNCWNC
FT                 GKLGHRYQECTGERRVFCYGCGKADTYKPSCRKCNPKNLAARAPLISARRQ
FT                 MVSKATNTE"
FT   CDS           2277..5570
FT                 /product="Gypsy-8_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MQSKKLGSSCTVDQCTQTDGIESHQYGVTSSKTNSLP
FT                 LQPAMSQIPDLPTRTEIENGSQRSLRMKLRRCAYNVARKQERKVLLSAVVG
FT                 NAQDIRPYAEVQLLGRTVTGLLDTGATISCIGGELALKVSHATVKTVNASV
FT                 RTADGAAQKIVGKISTPVLFRDETKPITLYLVPSLAQELYLGXDFWAAFKL
FT                 LPPGVVTQNAKPEVAALAKDDHMHISLTDSQQAMLSEAIQKFPSFAKEGLG
FT                 RTSWISHDIDIGDAKPIKQRHYSVSPAVEKVMFEEVDRMIALGVIEESDSP
FT                 WSSPVVLVRKPGKVRICLDSRKVNEVTVKSAYPMPLIDGILSRLPKAEYIS
FT                 SIDLKDAYWQIPLTPDAREKTAFTVPGRPLYQYTVMPFGLTNAPQTMCKLM
FT                 DKVIPSQLRHEVFVYLDDLLVVSSTFEIHVRVLSELASRLKQAGLTINVEK
FT                 SKFCLKEVRYLGHVIGDGTIKTDPEKVSAIREFPTPRSVKQVRRFLGVTGW
FT                 YHKFIRNYAGLAAPLSDTLKQKRKFEWTNEAQLAFEDLKGKLCSAPVLHSP
FT                 NFRSPFAIHCDASHTGVGGVLMQKDVEGNEVPIAYMSRKLNQCQRNYSVTE
FT                 KECLAAVLCVKKFRAYIEGHEFVIITDHASLKWLMSQSDLSSRLARWALKL
FT                 QGFDFQIHHRKGVNNKVPDALSRAYTEDLSELQVDSLLDLSSPQFHSVEYE
FT                 DLKTKITANQTKMPDVKVIDGFIYRRAEHAVGEKVSDDLCWKLWVPSALTS
FT                 VVLRQAHEHPLSSHGGIHKTLERIRRYYYWPNLVTDVKAYVNQCEVCKCSK
FT                 HPSYCLRPPMGKTQGTNRFFQKLYVDFLGPYPRSKSGNIGIFIVLDHFAKF
FT                 PFLKPVKKFTADSIIRFIEEELFHCFGVPETVVSDNGVQFKSQVFQSLLQN
FT                 YGVKHMFTAVHAPQANASERVNRSVIAAIKAYIKPDQSNWDEKLSHIACAL
FT                 RSSTHTAINSTPYRIAFGQHMVTNGSSYQLLRQLEMLEDRTVQFSRDDSFN
FT                 IIRQKAMHSAQQQHSRNEKVYNLRSRDVSFVVGQEVYKRNFQQSNFSRGFN
FT                 AKLAPTFVKARVRKRLGNSYYELEDLHGRLLGKFHAKDIKQ"
XX
SQ   Sequence 5638 BP; 1670 A; 1230 C; 1285 G; 1446 T; 7 other;
     gtattakcaa tatatantta tatanataat aaatttaaaa gaaamgtaaa aataattggc        60
     gcccaacgtg gggcccgakc tgtcacagcc ccagtaaatg tccgaaagac agtcaactac       120
     acccgactgg aaattcctta tccttctggg ttcagacaac cttgttaact tcctcaatat       180
     cggttgtgaa ggtatagtgt agcgagagag actgttgaaa tcctgatgtt ttccattaag       240
     ctcttggtcc agtccactta agctgcatct gacttaacca ctgccggtat atcgatcgag       300
     tgcaggtaga tattccctcc gtcgatcgaa attgggttaa tttatggcga caagctataa       360
     cctatctcgc ggagttgaga gtatacgcaa ggaagtttat ttgcagtttt tttctatttt       420
     ctatcatcct cccaactata aagagcgtcg tcgactgtcg aaatcctgaa gctgttagag       480
     taagctcttg gtccagttga tgcaaagtaa gacctacttg gtccagtttt ttttggatag       540
     gattcagccg ttgatagaaa tcaggtgtat gtatggcaaa acgctatcgc ctgtctcgcg       600
     gtagaaagaa cctgtccgac acagtatctt tgttttctac acgaattcgt ctcttagaca       660
     gtgagattag atagcgaacg agattcagtc tatctcttat gtgcatcgaa gcagaatcat       720
     gatcctttta tttaaaaaca ttttgtcgtt tgtattcctt tgccttgata tataaattag       780
     tccgtattta gtgtcgtaat tatctataaa agatcgtcgg gtaagagatt atgtacgata       840
     atcatgcccc taagtcgtag tcccgagaat ttcgctcaaa tagagaatca gggaataatt       900
     tgtagcacgt gcgccaagga agttgactac ctagctcagt taattaccac cagctgtgga       960
     caccaattcc accgagtctg ttttaaccgt aaagctggag ccaaaaagat ttgtcctgtc      1020
     tgccacgtta gcttgcatgc atcggctttg aatttagctg aggagattgc cgcagcccag      1080
     actgcaagcc aagaccccag ctcaaccatg caccagacta ggtctaaggg tagggcaacc      1140
     gatcccaacg cagacgcccc aagcgggtca actgttagtg agactaactc ggaagtacaa      1200
     atggaagcaa atgcagcttc gaccaatgca ggtctacacc aggttattgc cgatgctttg      1260
     gcagctgcaa tgcaggctca aacccacata ttagcgcaga ccatagaaac tggcctgcag      1320
     aaattatcga ttcagcaaac ggcgtcccgt gaaagtattg aaagtgttcg ttcacaacca      1380
     atcaatacac aaaccatcga cgaggtagaa caacaaacgt ttcagcaact gttcgggggt      1440
     agttcggaaa gacagacggc cagagagccg ccagctagat atagtctagg agggaccccg      1500
     ccagtctcag agctacgagc tgatagaata agccaaatca tttcaaattg gaaaatacgg      1560
     ttttcaggtc attcctccat tggcgtggac gacttcattt atagggtaaa tgccatgacc      1620
     aaccaatcct taaatggaaa ttttgaactg ttagccagat atgcgagcaa cctgtttgag      1680
     ggcagtgcca gtgaatggtt ctggcgatac cacaagagtg tccccctcat ccgatggtcc      1740
     gacctgtgcg tagcactcaa gactcaattc aaagacggac gtaccgactt ggatatccgc      1800
     tcagcgatca cgcagcggaa acagaagcca aatgaaccgt ttgatttatt ttatgaagca      1860
     atagtcgcat tggcagacaa actagtacag ccaatgactg agccctatct gttagaagct      1920
     cttaaagcca atttagttcc agaaattcaa cacgaaatct tgtatgtacc catcaagagt      1980
     atcgcagagc tacgtcatat agttcgtact cgcgagcgat tcttgcagaa cttgtccaaa      2040
     tctacgacga cgttgcagcg tgctgcgtct aaacgacata ttaatgagat gcatcaaacg      2100
     ttcagtgaga cggatgacga tgctgatggt gtagatgatg caagtattga tgccatgacc      2160
     cttaactgtt ggaattgtgg gaagttaggt caccgttacc aagaatgtac tggagagcgg      2220
     agggtttttt gttatgggtg tgggaaagct gacacttaca agccctcttg tagaaaatgc      2280
     aatccaaaaa acttggcagc tcgtgcaccg ttgatcagtg cacgcagaca gatggtatcg      2340
     aaagccacca atacggagta acgagttcaa aaacaaactc gctaccactt caaccggcca      2400
     tgtcacaaat accagactta ccaaccagga cagagataga gaatggtagc caacgctccc      2460
     tacgaatgaa gttgcgtaga tgtgcgtata atgtagcacg aaagcaagaa cgaaaagttt      2520
     tgttatccgc cgtagttggg aatgcgcagg acataagacc gtatgcagag gtccaactat      2580
     tggggagaac agtcactggt cttttggata caggagcaac aatcagttgt ataggagggg      2640
     agttagcgtt gaaagttagt catgcgaccg tcaaaaccgt taatgcatct gtgcgaactg      2700
     ctgatggagc tgcgcagaaa attgtaggca aaatctccac tcccgtgctg tttcgagatg      2760
     aaactaaacc cataacattg tatttagtac catcactcgc tcaagaatta taccttggca      2820
     tkgacttttg ggctgcattt aaattgttac ctccaggtgt agtaacccag aatgccaagc      2880
     ccgaagttgc tgccttagcc aaggatgacc atatgcatat aagcctaacg gattcgcaac      2940
     aggccatgtt gtcagaggct atccaaaagt tcccgtcatt cgccaaagaa ggtctaggtc      3000
     gaaccagctg gataagtcac gatatcgata taggggatgc aaagccwatt aaacagcggc      3060
     actattcggt atctcctgcc gtcgaaaagg tcatgtttga ggaagtagat agaatgatag      3120
     cgcttggcgt tattgaggag tccgatagtc cctggtcgtc accagtcgtt ctcgttagga      3180
     aacctggaaa ggtgagaata tgtctcgata gccgtaaggt caacgaagtc acagtgaaga      3240
     gcgcatatcc catgcctttg atcgatggaa tattaagccg actaccaaaa gctgaatata      3300
     tttccagcat cgacctgaag gatgcctatt ggcagatccc attgactcca gacgctcgcg      3360
     aaaagaccgc gttcaccgtc ccggggagac ccctgtatca atacacagtg atgccatttg      3420
     gactaaccaa cgctccacaa accatgtgta aattaatgga taaagttata ccctctcagt      3480
     tacgacatga agtgttcgtc tatctagatg atttgctcgt tgtatcttct actttcgaaa      3540
     tccatgtgcg tgtgttatcc gagctagcat ctcggttaaa acaagctggg ttaacaatta      3600
     atgtcgaaaa aagtaaattt tgtttgaagg aagtaagata ccttggccat gtcattgggg      3660
     atggaactat taaaaccgat ccagaaaagg tttcagccat tcgggaattc ccaacacctc      3720
     gttcagtcaa acaggtacga aggtttttag gagtaactgg ctggtatcat aaattcattc      3780
     gaaattatgc cggtctggcc gctccattgt cggacacgtt gaaacagaaa cgtaagtttg      3840
     aatggacgaa tgaggcccaa cttgcatttg aagacctgaa aggtaaactt tgcagtgctc      3900
     ccgttttgca tagtccaaat tttcggagtc cattcgctat tcactgcgat gcgagtcata      3960
     ctggcgtggg cggagtactt atgcaaaaag atgtagaagg taacgaggtt ccgatcgcat      4020
     atatgtctag aaagctaaat caatgccaac gaaattactc ggttacagaa aaagagtgtt      4080
     tagcagctgt actgtgtgtt aaaaagtttc gcgcctacat cgaagggcat gaatttgtca      4140
     ttattaccga tcatgcttcg ttaaaatggc ttatgagtca atcggatttg agctctagac      4200
     tcgccagatg ggcgttaaaa ttacaaggtt ttgacttcca aatccatcac cgaaaaggag      4260
     tcaacaacaa agtgccagac gccctgtccc gagcctatac tgaagacctg tccgagctcc      4320
     aagtggacag tctgctagat ctcagttcac cacagtttca ctcagttgag tatgaggatc      4380
     taaaaaccaa aataaccgcc aaccagacga aaatgcctga tgtcaaagta attgatggtt      4440
     tcatttatcg tcgtgctgaa catgcagtag gagaaaaagt atccgatgac ctctgctgga      4500
     agttatgggt accatccgcc ctaacgtccg ttgtgctgag gcaagcacac gaacatcctc      4560
     tctcctcaca cggtggtatc cacaaaacgc tggagcgaat acggcgatac tactattggc      4620
     cgaatttggt caccgatgtg aaggcatatg ttaatcagtg cgaggtatgc aaatgttcaa      4680
     aacatccaag ttattgctta cgacctccca tgggaaaaac tcagggaact aacagattct      4740
     ttcagaaact gtatgtagat ttcttgggac cgtatccgcg tagtaagtca gggaacatag      4800
     gaatctttat agtcctggat catttcgcca aattcccatt tctcaaaccc gtaaagaagt      4860
     ttacagcgga ttcgatcatc cgatttatcg aggaagagtt gtttcactgc ttcggcgtac      4920
     ccgagacggt agtatcggat aatggagttc agtttaaatc acaggtattc cagagcttgc      4980
     tgcaaaacta cggtgtcaaa catatgttta cagccgtgca tgcaccccaa gcaaatgcgt      5040
     cagaacgtgt gaatcgttcg gtcattgccg cgataaaggc ctatataaaa ccagaccagt      5100
     ccaattggga tgaaaagttg agccatattg cctgtgcact acgttcgagc acacataccg      5160
     ccattaattc aaccccgtac agaatagcgt ttggtcaaca tatggttacc aatggctcta      5220
     gctatcagct attaagacag ttagaaatgc tggaggatcg aacagtacag ttttcgcgag      5280
     acgattcgtt caatatcatt cggcaaaaag ctatgcattc agctcaacag cagcatagtc      5340
     gcaacgaaaa agtatataat ttgcgtagtc gagacgtctc gtttgtcgtt ggtcaggaag      5400
     tgtataaaag aaacttccag caaagtaact ttagcagagg ctttaatgcc aagctggcac      5460
     ctactttcgt gaaagcccgg gtgagaaaaa gacttggtaa tagttactac gaactcgagg      5520
     acctacatgg acgactccta gggaaattcc atgctaaaga tataaaacaa tgaggtttca      5580
     ggcgtggatc actcttttca gtgtatcact gccaagtgtg atcttggtag gggggtgt        5638
//
ID   Gypsy-8_DPer-LTR repbase;    DNA;    INV; 2165 BP.
XX
AC   .
XX
DT   02-OCT-2011 (Rel. 17.08, Created)
DT   23-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DPer_;
KW   Gypsy-8_DPer-LTR; Gypsy-8_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2165
RA   Jurka J. and Kojima K.K.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1517-1517 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 2165 BP; 588 A; 519 C; 424 G; 633 T; 1 other;
     tgtagtggcg cctgtccaac caaaaatatc ggataaccgt cccacggttt ccccttccct        60
     tagacatgca ccttgcacct tttgggcagt tatgcgcaag aaaaaaaatg acataagtta       120
     acagcggcta ctgtcaaggt gtggtgaaaa aaaaggggaa tgagagaacc aagggctcaa       180
     gcggaaggag agtggcttgg gcatgttctt ttcaatttta ctcgcgatcc cagacggacg       240
     tctgaggaaa atactccagt agtgcagtga aagaaaaaaa aattctaacc tcgaccgaaa       300
     ttaccgcgtg tccatcgtgg ctaagatcta gtcaaaagat cagccgacca ttcctacgtt       360
     tattaagcga aggccgaacc catcgggtga gtggaaattg taccccaact gccggccaac       420
     agaaaattaa agttcgtttt ttttcttaaa aacctaacca taggtttggc cgtacgtaat       480
     accgtacgaa acgccggtcg tagtgccgta agccgtaccc actacagtct cgtcaccttg       540
     ccacacatat aagtatccat cgtaccgatc gactactgta tgtgttagcc gtcttcgacc       600
     ccaaatcttc tttcggcgtg gcgtctgcat acatgtgagc atcactgtat ttaccgcagc       660
     gtgtaccggc gtgggtccac acacatacaa gccttgctcg gcctacccca gtgaaaaacg       720
     gtcgatgggc ttttatctac gagtgcagtg acatacatat gtacatatgt gtgagattga       780
     ctattccctc ttcagtgact ttcgtcattg ctacgtcgct tacgccgccc gcatacgaac       840
     agtaacgcta aaggagaaga caattaccgg tgccgttata ctgtttgcgt tgctgatgaa       900
     gtcattcggt gtctcgatca tgatggctat gcccatgcat ttcttcatat tagaataata       960
     ctttggaacc ccactattgt actgacccta ggattaacmt taaaagttaa tttcgtgtga      1020
     ttcggtttgt ttggattatc ataaagaaat gtgcagttag aaggaaagga actaaaacta      1080
     atactcgcgc atatcgccta tctactctga cacactgata tttacaagtt ttcagccacc      1140
     ctcatcgacc acatggaagc gctttcatcg ttggatttga tcgtactgtg agtgataacc      1200
     tgtgaacgtc tgctatatgt gaattcaaaa ttttacgcaa gtcgaagcaa cattaaagat      1260
     tccatgcctc gaccgtaaac ttcccagccg tactgtaacg ctgaccaatc caatggttca      1320
     cgtgtttgtt ttgttctgct ctttcgcaag caatgtaact ttctgcaatt ccgaatctat      1380
     cgacaaccga acttatgatt gggattaccc cacaagcaat tgctgtgcac tttaaagatg      1440
     catccatccg tcccttgttt ttgcatttaa actgaaaacc attcgactat atttctattt      1500
     gtgtaacgta attaccatta ttactgaata tactctttat aattagttga ccctagtcta      1560
     ataagatctt tcatcatgat atttttatat atataattaa tcttaattgc agcttatttg      1620
     aacatattat ccttattact ttaatagcct ttatacatat agatctaccc tgttagcagc      1680
     catgagagct tgtaggaaag ttaatgaata aactgtttgt aatgaattcc cgttaattgt      1740
     tgccgttatt aaaggatcat gtggcgccga gatgacgtaa cctagcagaa gtagagcgtt      1800
     taatttaggg atcgttaccc attactcagc atatttggac tggtgcgatc aaggaagggt      1860
     gggcataccg agttgcaatg acaccgcaag caactcccgc tcgaattcgt tccgctgact      1920
     catctcccta gactgtcatt tctctgtaaa tttcttccgt ctgaaccttg aaccgcacgc      1980
     gaaacttatt tttattgtct ttgctcctaa tgctcgagct cgtgacgcga tctctcccta      2040
     ccccaccccc actctacccg actaaccatg agaccggcag caacgcgtgc atggatctcg      2100
     atcataccct ccatctgctc gtctaccgtt tcagatccta gcctcctgct tcgttatctg      2160
     ttaca                                                                  2165
//
ID   Gypsy-8_DRh-I repbase;    DNA;    INV; 5881 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DRh_;
KW   Gypsy-8_DRh-LTR; Gypsy-8_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5881
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1565-1565 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [4108-4584] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1945..5019
FT                 /product="Gypsy-8_DRh-I_1p"
FT                 /translation="MSGCDEIVANPGHVGGHHSLLPMLVMPTMLDRVILGM
FT                 DFLKAAGTRVRCGQATLELRSEPQARGDPLLQPVLIPPRDDREGAVHSDKF
FT                 RVQLGTARQGGTEVLSPTPTRDAATTKDTGKTARTEAEDHDEERQIVPLSP
FT                 RQQGFLERELALFESLQGVSQIAEHRIVMRDDKPLKQRYYPRNPAMQHVID
FT                 TQVDELLRAGAIEPSRSPHSAPIVLVKKKGGDWRMCVDYRQLNAHSVPDAY
FT                 PVPRINHILEKLRHARYISTLDLKNGYWQIPMARDSRQYTAFTVPGRGLYQ
FT                 WKVMPFGLHSASATFQRALDSVIGAEMEPVAFAYLDDIIVVSATEEQHFAH
FT                 LAEVFRRLRAANLRINPRKCTFFKQKLVYLGHVISGEGIQTDPEKVSAING
FT                 LKTPTNLKELRQWIGMASWYRRFVPGFATIVQPVTALLKKGRKWTWGPEQQ
FT                 TALEEIRRCLTTAPVLGCPDFDRKFVLQTDASDVGLGAVLSQDVEGQEKVI
FT                 AYASRRLTPAEHNYTTTEKECLAIIWAIRKMRCYLEGYRFEVVTDHLALKW
FT                 LNSIESPSGRIARWALELQQFQFDVRYRRGKLNVVADTLSRQPCEVLQGAI
FT                 ELEDHCEWIRKMKDKVRDEPEKFSDYMLENGQLYRNMGYRADDEDYFPWKL
FT                 CVPTPCRARVLYECHDSPTAGHLGVRKTITRLSQRYFWPGMYRDAKQHVRR
FT                 CESCQKFKTVQTKAAGKMLTRVVSEPFDILCADFVGPLPRSKQGNSMLLVF
FT                 HDVFSKWVELIPLRKATAAAVQKAFRERILGRVGTPRKFVCDNGTQFTSRA
FT                 LKDYFAKLGVEVQYTAPYCPQENPTERTNRTVKTLISQLSEGDQSSWDNML
FT                 PEISLAINSSVSDSTGYTPAFLTQGRELRLPAMLYDELTPGSAVAHTGPED
FT                 KASHLQGIFDIVRSNLQRASLEQARHYNLRRREWRPTLGSQVWLRQHPLSK
FT                 ATEGFAAKLAPKYDGPYTVAKFTSPNLVRLQRPGDRRRRIANISQLKPYYA
FT                 EDALDASDDDITGPSNPAR"
XX
SQ   Sequence 5881 BP; 1504 A; 1552 C; 1652 G; 1170 T; 3 other;
     ggacttcaac gcccgcaaag tatcctcccg gctcggcctc gcccgaaggt ccagcccggt        60
     ggatttttcg cccttgacgc gaaacacaag acaaggattc cacgcgtcca cgtttccgtc       120
     gacacggata agaaccttcg gtgcagactc cccatcaaaa tcatccgttc acctgtagaa       180
     cggaactctc tagtccggtg tttcggtgat ttacaaattt cttgtaaagg actcttggat       240
     ccgactgaga tctgtacccc ggccgagaaa gcatccttac aagtggcgcc cgagcaggga       300
     caccgagact agctagagat ttatccaagt ggcctaaaga cccactgtga aaagggaaga       360
     gtcgaccgga gagtcgagac gaaacgaccg aaggaataga aggatataag aaaaccgccc       420
     aggaaaataa gacgatgagt actcctaagg aatccgacgg tgagtacgaa gaaggtagtt       480
     atatcaaaaa ccctggtgta ggagttcgct ggatatatgc ccgccgaaga gacgaactca       540
     actcccttgc cgttgagttc ggctttaaag cggatggtac cgtcgaagag gccaggaagg       600
     cgtttgccaa cctggtcagc gcaggatcct tcccacaacg cgtgtggaac cggctagctc       660
     agctgcagga acagtacagc agtcgggccc cgagccctaw tcccacagga aagaacgacg       720
     agatggggca attcgcggag tccctccgga tccccgtcgt ctccgacgct gcgccggtcg       780
     aggttccmgc tcgtcatcga ggggtacatc caggaacgac acacggcgtc tgggtgccgc       840
     cagtagacgc tcgcttggcc actggcctac aggggcagga ggtacggagt aatwcgactc       900
     ccactcagca cttgctcccc gagaagatgc acaagtggaa cctgcggttc gatggtagct       960
     cggatccgtt aactctcatc gccgcactcg aggagaagat gacgacgtat aggataaatc      1020
     cggaagagat cccccgggct atgtccgaaa tcttcgaggg cccggcggca cggtggttcc      1080
     gtactagcca tctgcagtcc gcctcttggg gaactttccg gagggaattc ctggagttct      1140
     tcttacctcc tcgatacttc gaacgattag aggacgagat tcggactcac gtgcagagaa      1200
     gaggagagcc tttcaaaaca tacctgatcg agctcaggac gaagatgcag caggccgggt      1260
     accgagaaga ggaagagttg taccgcgcat acgaaaacat ggctccagag taccggctgt      1320
     acatcaagcg cagtgaattc gggacgttga agcagctgac ccacatggct actgagtacg      1380
     agtgtgtcaa acaactcgag tcgactcgag acgggaccac aggaggaacg gacaggaacc      1440
     acgagggatc gcaacttcgg cgatcgccga acccctttcg gaacttggag agtactacac      1500
     aggcaggaca cgtgactcac cggatgatcg ggcaagaaac ctcgcgagtg gacgtgcagc      1560
     gggcctgcgg ccgttgcggt gagaacggac atttccgtcg cggctgtccc aacccacgtc      1620
     gcgacttctg ttgggattgt ggccgggtgg gagtgctaac tatagagtgc tgccgtcgaa      1680
     atgcctcggg aaacggagga cgtctccgcc ggaatccggg tacggcagag acgagcgaag      1740
     caacggcccg accccaacaa aacccccgtt aaggatacac ggtgggctca tcacagcagc      1800
     gatagaagtc ggaggaaggt gggtagacgc caccgttgat acaggggcat cgaggagttt      1860
     cgccagtgaa agttttacaa agctggttgc ccgcgcagac gaggttcgtg aagttgtcac      1920
     tagaatagcg ttggccgatc ggtcatgtct ggatgtgacg aaattgtggc gaaccccggt      1980
     cacgttggcg ggcaccacag tctcttaccc atgttggtga tgcccaccat gttggaccga      2040
     gtgatacttg ggatggattt cctcaaagca gccgggacgc gcgtgcgatg tgggcaggcc      2100
     accctcgaat tgcgatccga accccaagca agaggggatc ctttgttaca accagtgctc      2160
     atacctccga gggacgatcg agaaggagcg gtacactctg acaagtttag ggtccaattg      2220
     gggactgcca gacaaggagg aacagaggtt cttagcccta cgcctacgcg ggacgcggcc      2280
     acgacaaaag acactgggaa aactgctagg acggaggcgg aggaccatga cgaagagcga      2340
     cagattgtac cattgagccc gaggcaacaa ggcttcctcg aacgagagtt agctttgttc      2400
     gagagtctcc agggagtatc tcagatcgct gagcatcgca tcgtcatgcg cgacgataag      2460
     cccttaaagc aaaggtatta tcccaggaac cccgcgatgc aacatgtcat cgatacccaa      2520
     gtagatgaac tgctccgcgc aggagccatc gagccttcca ggagcccaca cagcgcaccg      2580
     atcgtattgg tgaagaaaaa gggtggcgat tggcgcatgt gtgtcgacta tcgacagttg      2640
     aacgcacact cagtgcccga cgcctacccg gtcccgagga tcaatcacat cctggagaag      2700
     ttgcgtcacg cccggtatat ctccacgttg gatttgaaaa acggctattg gcaaataccc      2760
     atggccaggg atagtcgtca atacacggcc ttcacggttc caggtcgggg actatatcaa      2820
     tggaaggtca tgccctttgg cctgcactcc gccagtgcaa cgttccaacg tgctctggac      2880
     agtgtgattg gggcggagat ggagccggtc gccttcgcct acttagatga catcattgtc      2940
     gttagcgcta cggaggagca acacttcgct cacctcgccg aagtgtttcg cagattacgg      3000
     gcggcgaatt tgaggataaa tccaaggaag tgtacattct tcaagcagaa actggtttac      3060
     ctcggtcatg tgatcagcgg cgaagggatt cagactgatc ccgagaaggt gtctgcgatc      3120
     aatgggctga agacccccac caacctgaag gaactacgcc aatggatcgg gatggcatcc      3180
     tggtaccgga gattcgtccc gggcttcgcg accatcgtgc aaccagtgac cgcgttgctg      3240
     aagaaaggcc ggaagtggac ctggggaccg gaacagcaaa ccgccttgga agagattaga      3300
     agatgcctga ccaccgcccc cgtgttgggt tgtccggatt tcgaccggaa gtttgtctta      3360
     cagactgatg cgagtgacgt aggcttggga gcggtgttat ctcaggacgt cgagggccaa      3420
     gagaaggtca tcgcatacgc tagccgtcga ctaactcccg cggagcacaa ttacacgacg      3480
     acagaaaagg agtgtctggc catcatctgg gccatcagga agatgcgatg ttacctggag      3540
     ggctaccgat ttgaagtcgt taccgatcac ttggctctca aatggttaaa ttccatcgag      3600
     agtccttccg gccgaatagc gcgctgggct ttggaattac aacagttcca attcgacgtg      3660
     cgttaccgac gagggaagtt gaacgtcgtg gctgatacgc tttcccgaca gccctgtgag      3720
     gtacttcaag gcgctatcga gctcgaggac cactgcgaat ggatcaggaa gatgaaagac      3780
     aaggtacgcg acgagcctga gaagttctct gactacatgt tggagaacgg ccagctctat      3840
     aggaacatgg gttaccgagc agacgacgag gactacttcc cgtggaaact ctgtgtaccc      3900
     actccctgta gagcccgcgt cttatacgag tgtcatgatt ccccgaccgc aggacacttg      3960
     ggtgtccgaa agacgatcac ccgcctgtcg caaagatatt tctggcccgg catgtaccgc      4020
     gacgcaaaac aacacgttcg gcgctgcgag tcttgccaga aatttaagac cgttcagacc      4080
     aaagcagcag ggaaaatgct tacccgtgtc gtaagcgaac ccttcgacat tctctgcgct      4140
     gactttgtag gtccgctgcc ccgatcgaaa caagggaact cgatgcttct cgttttccat      4200
     gacgtgttct ccaaatgggt agagttgatc ccactccgga aagccaccgc tgcggcagta      4260
     cagaaagcgt ttcgggaacg catactcggg cgagtgggca ccccccggaa gttcgtgtgt      4320
     gacaacggaa cccaattcac aagtcgggcc ctaaaagact actttgctaa gctcggcgtg      4380
     gaagtccagt acacggctcc gtattgtccg caggagaatc ccaccgagag gaccaatcgc      4440
     acggtgaaga cgctgatatc tcagctgtcg gaaggagacc agagttcttg ggataatatg      4500
     ttgccggaga tttccctcgc tatcaatagt agtgtatcgg actcgactgg gtatactccc      4560
     gcatttctca ctcagggacg ggagctacgc ttgcctgcga tgctgtatga cgaactcacc      4620
     cctggatcag cggtcgcgca tacaggtcct gaagacaagg cgtcacacct ccaagggatc      4680
     ttcgacatcg tgcggtcgaa ccttcaacga gcatctctgg agcaggcgag gcactataac      4740
     cttcggaggc gcgaatggag accaacgctc gggagccaag tatggctgcg acaacatccc      4800
     ttatcaaaag cgaccgaggg attcgccgcc aaactcgctc ctaagtatga cggtccctat      4860
     accgtcgcga agttcacatc tccgaacttg gtacgtctgc agcgcccagg agaccgtcgg      4920
     cggcggatcg ccaacatatc tcaacttaaa ccctactacg cagaggacgc cctcgacgcg      4980
     agcgacgacg acatcaccgg gccaagtaac ccggcacggt aagcggtctg gaaccacgaa      5040
     ataactttaa gatccatgct tgtaataggt taagattaac gagtcctttg ttagctacac      5100
     cgttaggtag ggagttcgaa aggtagggtt ataccaataa gtctagattg ctgtttcaga      5160
     tggacgacgt aatcatgctg tccgatgact cccaagacac cgaggccttc tacccacagg      5220
     cgcttacagg tttaccgtca caatcaagaa cgacgggcgc ctctacattg cgccgcggga      5280
     aggaaggggg ggtgtgacga acccgcctag gaggcgtgta cgccacaatg gtttttctta      5340
     tcattatact agttttaaga gaaatatcat gaagtttaat aaatattaag acatagttat      5400
     atctaagttc aaatcccggg gtggcaacgc catccgatat ttagccaaga cacatttaat      5460
     actagaaaag caaggagcta agatatcagt agtgggaaaa tactagaaat cccgaatgtg      5520
     ggaaaaagga ggaaaagggt aggcgatcac acaacaaccg gacagcgtga cttctctcgg      5580
     gatcgcggaa ccaggcagac gtgtgatcgg cacacggctc agcgaaactt cgagacccca      5640
     cgtgtgctcc gcaagcttat tcgcaagaca ggccaaacgt gacgcctaac gcgacctttc      5700
     acagctttct catcgcgagt gttccgccgg tttaatttgg ccaagtgcta cgctgtcgat      5760
     cgcgggtgaa attaaagagg ttagtacaaa taggttctca tacgctcaga acggtgtagc      5820
     ggactcgggt gaggacaatc tcaataaagt gttacgattg tttaatcaca tctcccgatc      5880
     g                                                                      5881
//
ID   Gypsy-8_DRh-LTR repbase;    DNA;    INV; 687 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DRh_;
KW   Gypsy-8_DRh-I; Gypsy-8_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-687
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1566-1566 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 687 BP; 104 A; 236 C; 163 G; 183 T; 1 other;
     tgtgtatttc attttgtagt tagaaaagaa acctaacctc attctcacag ctactttggg        60
     cccgaacgtg gacatacttc ccgttcgcca cagtagccgt agttttgctc ctagtagtac       120
     catcggacct gaatgcggac cccttcccgt tcggtccagt agttccccca accctccctt       180
     cgtagtttgg gatttgagcg cgacacccgt cccgccggat ccgttctccg gtagttcccc       240
     actcccttcg agtttgggat ttgcgcgtgg acaccctccc gccggatccg ttctcggtag       300
     tttccccact cccttacgta gtttgggatt tgcgcgtgga cacccgtccc gccggatccg       360
     ttctccggta gtttccccac tcccttacgt agtttgggat ttgcgcgtgg acacccgtcc       420
     cgccggatcc gttctccggt agtttccccc actcccttac gtagttttgg gatttgcgcg       480
     tggacacccg tcccgcccga tctatcaacc tagtgtctgg tctmcgtagt agtttggaga       540
     ctggcacgtg gacacccgtc ccggccggtc agtcgagtcg aatccctctg tccccttact       600
     atccggcccc ctcccaaagt atcttcccgg ctcggcctcg cccgaaggtc cagcccggtg       660
     gattttccgc ccttgacgcg agatcca                                           687
//
ID   Gypsy-8_DSe-I repbase;    DNA;    INV; 6481 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DSe_;
KW   Gypsy-8_DSe-LTR; Gypsy-8_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6481
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1467-1467 (2012).
XX
DR   [2] (Consensus)
XX
CC   Positions [5363-5836] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1545..2708
FT                 /product="Gypsy-8_DSe-I_2p"
FT                 /translation="MSAKQGRTIPLTRNLVRAAERERAIRNLQLTEQEEEE
FT                 NNLSLINQTTMTQRTNRDVMDELQIPDAIKLLPTYDGDKELLNKFITSVER
FT                 VLKLITNIDKTAYGELLLGVIRDKVIGHADKILIRERVPLNWDDIKQALTD
FT                 NFGESRSEENLMDDLREIPYKKLAIKNLYQEIAGIRVAMLEVLERDETNIE
FT                 IRKIKESSYEKTYIQKFIAGLKNPLRWTVKAQNPKTLRQANEIAKELRDDY
FT                 IRDRNRDEYHNPGGRGRGRGQYNNSNRYNSEQQQYNNTTNNDEQRNNNYKR
FT                 GRDRSNDDSNSNRGQHQKRGRFSGSSDRGRNYQGSTRSGNGTNSDRSQQSG
FT                 SSGHNNMFHTEASNTNQTENFSVNASEPQTIPNNQDSERNSFMSR"
FT   CDS           2960..6169
FT                 /product="Gypsy-8_DSe-I_1p"
FT                 /translation="MDFLTKVGAKIDIEEEKLETINATIKLFKKEKKSQTS
FT                 TLIQGQTKTLIEIPVINKEGDIYINEIYIQDGLSITEGIYRAENYKAKVEI
FT                 INASEQDLTITINKPIVAQRYDSENFCEFLFINEITEKEVNTEKATKLKLR
FT                 IEHLNKEEKFAVIKLCKQYRNLFYQKGDKLTVTKGANHTIKLTDENPIYVR
FT                 PFRYSLKENQEIKRQITDLLDQDIIKNSYSPWSAPVWLVPKKEDASGERKC
FT                 RLVVDFRKINEKTIKDKYPLPLISEVLDSLGNAKYFSSLDLKSGYLQIKMN
FT                 PGDIPKTAFTAVGGHYEFIRMPFGLTNAPATFQRFMNKLLGEIIGKSCLVY
FT                 MDDIIVYSASLQQHMQDLRVVFNKLKSANLKIQQDKSEFLKKELEFLGHIV
FT                 TPEGTKPNPKKIEAIQNFVLPTTRRQIKSFIGLLSYYRKFIKDLAKIIKPL
FT                 TVQLKKKKAVEITQEFREAFQYAKTLLCNDPILQYPDYDKPFLLTTDASNY
FT                 ALGAVLSQGKVGNDKPVAYASRTLNRAEVNYSASEKEMLAIVWAVKQFRQY
FT                 LYGTKFTIYTDHQPLIYLNNIKNNAKLIRWRLQLTEYEYDIVYKKGKFNTN
FT                 ADALSRMQVETFVNESESVEAVNGDDPGDSGEIAKITEKPINDFKMQLILK
FT                 IGEIVDKITETPFKNKIRITFVQPQYTDDNILKILKDTLKSGRLCAIMTSN
FT                 DIFNRIFMIYKDNFEKKGCKIIRATLFLKEVLNPEEQNSILIKDHENSNHR
FT                 GIDETILHVRRLYYFPRLKEVVTKINNNCDICQTMKYDRNPQKLKFQVPQI
FT                 PALPLQIVHIDLYFINSAIMLTIIDKFSKFAAAYTIQNRNTITIITELKKF
FT                 VLNYGLPQLIICDQGAEFNSKLFKDFCKQYNMQLHFTSFQQSSSNSTVERL
FT                 HSTLTETYRIIYKVKKDHKINCDHEEILTETLITYNNAIHSATKLTPFELF
FT                 TGKTHVFNRTVEYSDEHDYLQKLNEFKTKLYTQVQTEMTAKAIERNQKQNE
FT                 TRTDPLPLTAEDIVFRKENRRNKITPRFSKHIVRTDHGITFETKKGQKVHK
FT                 EKIKRKFKDRQTV"
XX
SQ   Sequence 6481 BP; 2718 A; 1115 C; 1094 G; 1549 T; 5 other;
     cgaccggtaa ctggcgcagt cggactcgtc attggactag aagaagagmc gaggacgaag        60
     accccacgca atgcagattg gaataatatt attagcaaag taagcattgg aagtgataaa       120
     tggcaaagtg aaagtataat agatatcgaa aatacagatg tatamaagtt aagtgcatcg       180
     cataagwgca tcgcaactag gwtcccgagt gaaacaggcg cctatgccca ctcgcaacga       240
     tcaacaaagg gccacctagg ctcacggatg aaacaggcgc ctatgcccat ccgcaacgaa       300
     atgttcaatc agcaagtgta ttcgttagcc gtgttctatt tgttcacacg ctatcctcta       360
     tatggcagtg tgaggtgccg aattcatatc ggtcgaatag ttcgcttaca ttacagtagc       420
     tgatgtgagc atacatacga aacgtacaaa aaaaaataca tatatacaaa cacacatata       480
     atacatacat acacatacat ataagcatgt atatcaattc ggcagttctg cgcgacgact       540
     ccggcgccta cctagcgtcg acgacgtcgc ctggctggcg ttgcgagtcg ccaccgccga       600
     ctcacgacta acagctaaat acagctaagc cgagaaacgg taaatgtcgt ccgatcacgg       660
     gtattaccca actactacca cagggcttgc aacggaaaaa attaaaaaaa aatatatata       720
     ataaaaattt tcgtcgcgac atctatggcg cctaagccag cgtcgtcgac gtcgctgcca       780
     cagaccacag ctatggtaag gcaatattaa aattctttag atcattcaag agttgtcctc       840
     cagtgaagca agatcgttgt gaaaatatca attttgtatg caaaaacgca aatcaaatat       900
     aaaaatatat agtaacatta attgtgwcac aaacatctat acgcaaaaga cgtgaaagtg       960
     acatttgtaa atgcatttaa gtgtttacgc taacagtgaa acaaagtgca caaagaaatt      1020
     aaatcgtaaa atcgatacaa aattcttcgc catttatcac aaccaaacaa caaaccatat      1080
     tacaataagt taaaatcaaa atataccata ttcgtgaaaa gatatacatt tacttgtcac      1140
     acacaaaaat atatatatat tataaaagta agcacacgca taaatctata tatatatata      1200
     tataacccca tatatataaa tccctaaata tactcatata tatatatcca catgtataca      1260
     catacataca tataaattta acgcacatat atagatacaa atattatata aagcatagta      1320
     cactaaacac atacactatt caacccaaac aacatactat aatacacaca aatgaaataa      1380
     atacacattt atatatatac aaatatagta atacccacat acacatttat ttgaaaaaaa      1440
     aaacatatac atacacacat atatatccac acacatacac atatataata tttcactaca      1500
     tacgcattac gatatctact tttatcaatc tcatatagta atacatgtca gctaaacaag      1560
     gaagaaccat acctttaacg agaaacctag ttagggcagc agaaagagaa agagcaatta      1620
     gaaacttgca acttacagaa caagaggaag aagaaaacaa tttatcccta ataaaccaaa      1680
     ccactatgac acaaagaacc aatagagacg tgatggacga actacaaata cccgacgcaa      1740
     taaaactatt acccacttat gacggagaca aagaattact aaacaaattc attacaagtg      1800
     tagaacgagt attgaagctg atcacgaata tagacaagac agcatatggg gaattactat      1860
     taggagtaat tagagacaaa gttattggac atgcagacaa aatattaatt cgagagagag      1920
     tgccgttaaa ctgggatgac attaaacaag ccttaacgga taattttggg gaatcgagaa      1980
     gcgaggaaaa tttaatggat gatctccgcg agattcctta taaaaaacta gctattaaga      2040
     atctatatca ggagattgca ggaataagag tcgcaatgtt agaagtttta gagagagatg      2100
     aaactaatat tgaaataaga aaaataaaag aaagttcgta tgaaaaaact tacatacaaa      2160
     aattcatcgc aggcttaaag aatcctttga gatggacagt aaaggcacaa aaccctaaga      2220
     ctctcagaca ggctaacgaa atagcaaagg agttgagaga tgactacata agagacagaa      2280
     atagagatga gtaccacaac cctggaggac ggggacgtgg acgaggacaa tataataata      2340
     gtaatagata taattcagaa caacaacaat acaataacac aactaataac gatgaacaac      2400
     gaaacaataa ttacaagaga ggacgggaca ggtcaaatga cgatagtaat agtaacagag      2460
     gacaacacca aaagagagga aggttttcag gttcttcgga cagaggacgg aattatcaag      2520
     gatcaactag atctggaaat ggtactaatt ctgacaggag ccaacaatct ggcagtagtg      2580
     gacacaacaa tatgtttcac acagaagcta gcaacactaa tcaaactgaa aatttttcag      2640
     taaatgcctc ggaaccacag actataccga acaatcaaga ttcggaaagg aactccttta      2700
     tgtccagata aattcaccat ttggtagaca ggtgagattc ttgattgata cgggatccac      2760
     tatatctata attagccccg aattcgttca gaaaggtact caacaatcac ttagaaaccc      2820
     agtacaaatt cgaacagtac tgaatacaca cgatattcat aataaaatta cgtataagat      2880
     ttttaatgaa tttaaacaag agggagactt tacatttctt atatttaaat ttcatccatt      2940
     ttttgacgga atattaggaa tggatttcct aacgaaagta ggagctaaaa tcgatattga      3000
     ggaagaaaag ttagaaacga taaacgcaac gattaagtta tttaaaaagg agaagaaatc      3060
     acaaacgtcg acgttaatac agggtcaaac aaaaaccttg atagaaatac cagtaataaa      3120
     taaagaagga gatatataca taaacgaaat atatatacaa gacggattgt ccattacgga      3180
     aggaatttat agagcagaaa actacaaggc aaaagtcgaa ataattaacg catccgaaca      3240
     agatttgaca atcacaatta ataaaccaat agttgcacag cggtatgaca gtgaaaactt      3300
     ctgtgagttt ttatttataa atgagataac tgaaaaggaa gtaaatacag aaaaagcaac      3360
     caagttaaaa ttaagaatag aacacctaaa taaagaagaa aaattcgcgg tgataaaact      3420
     atgcaaacaa tataggaatt tattttacca aaaaggggac aaattaacag taacaaaggg      3480
     cgccaaccat acaataaaac taacggacga aaacccaatt tatgtaagac cctttagata      3540
     ttcgctgaaa gaaaatcaag aaatcaaaag acagattaca gacctattag accaggatat      3600
     tataaaaaat agttattcac catggagtgc acctgtatgg ctagtgccta aaaaggaaga      3660
     cgcttccgga gaaagaaaat gtagattagt tgtagacttc agaaaaatca atgagaaaac      3720
     tattaaggat aagtatccct taccacttat cagtgaggta ttagattctt taggcaatgc      3780
     taaatacttt tcttcattag acttaaagag cgggtatctc cagataaaaa tgaacccggg      3840
     agatattcca aaaacagcgt tcacagcggt aggggggcac tatgagttta taagaatgcc      3900
     tttcggacta accaatgccc cagccacctt ccaaagattc atgaacaagt tattaggcga      3960
     aatcatagga aaaagttgct tagtatatat ggacgatatc atcgtttatt cagcatcgtt      4020
     gcagcaacat atgcaggatt taagagttgt gttcaataaa ttaaaatcag ctaatcttaa      4080
     aatacaacaa gataaatcag agtttttaaa gaaagagtta gaattcttgg gacacatagt      4140
     gacacccgag ggtacaaaac ctaatccaaa aaaaatagag gcaatacaaa attttgtctt      4200
     accgacaact aggagacaaa taaaatcatt tatagggctg ttgagttatt ataggaaatt      4260
     tataaaagac ttagcaaaaa taataaaacc tttgacagta caactaaaaa aaaaaaaagc      4320
     ggtggagata acccaagaat ttagagaagc ttttcagtac gcaaaaacat tactatgcaa      4380
     cgacccgatt ttacaatatc cagattatga caaaccgttc ttactaacga cagacgctag      4440
     taactacgca ctaggagcag tgttgtcaca aggaaaagta ggaaatgaca aaccagtagc      4500
     atatgcaagt cggacgctaa atagggctga agttaattat tccgcttcag aaaaagaaat      4560
     gctagccata gtctgggcgg ttaaacaatt tcgacaatac ttatacggga caaagtttac      4620
     gatttataca gatcaccagc ccttaattta tttaaataat ataaaaaata acgctaaact      4680
     aataaggtgg agactacagt taacggagta cgaatatgat atcgtttata agaaaggcaa      4740
     atttaatact aacgcagatg cattaagtag aatgcaagtc gaaacatttg taaatgaaag      4800
     tgagtcagta gaagcagtca acggggatga ccctggggat tcaggagaaa tcgcgaaaat      4860
     aacggaaaaa ccaataaacg attttaagat gcaattaatt ttgaaaatag gagaaattgt      4920
     agacaagata actgaaacac cttttaaaaa caaaataagg ataacattcg tacagccaca      4980
     atatacggac gacaatatat taaaaatact taaggacacc ttaaaatcag gaaggctttg      5040
     tgcgattatg acaagcaacg atatattcaa cagaatattt atgatatata aggataactt      5100
     cgaaaaaaag ggttgtaaaa ttattcgtgc gacactgttc ctcaaagagg tgttaaaccc      5160
     tgaagaacaa aattccatat taataaaaga tcacgaaaat agtaatcaca ggggaataga      5220
     tgagaccata ttgcatgtaa gaagattgta ttatttccca agattaaaag aagttgtaac      5280
     aaaaataaat aataattgtg acatttgtca gactatgaaa tacgacagaa accctcagaa      5340
     acttaaattt caagtacctc aaataccagc attaccgcta cagatagttc acatagattt      5400
     gtattttatt aacagcgcaa ttatgttaac aatcatagac aagttttcta agtttgcagc      5460
     agcatacaca atccagaata gaaataccat tactattatt acggaattga aaaaattcgt      5520
     tttaaattat gggttacctc aactaattat ttgtgatcag ggggcagaat ttaactctaa      5580
     actattcaaa gatttttgta aacaatataa catgcaactt cattttactt cattccagca      5640
     gtctagtagt aattccacag tagaaagact acattccact ctgacggaaa cgtacagaat      5700
     aatttataaa gtaaaaaaag accataaaat aaactgtgac cacgaagaaa tactaaccga      5760
     aaccttaata acctacaaca atgcaataca ttcggcaaca aaattgacac cattcgaatt      5820
     atttacagga aagacccatg tattcaatag aacagtagag tattcagatg aacacgatta      5880
     tttacagaaa cttaacgaat ttaagacaaa attatacacc caagttcaaa cagaaatgac      5940
     agcaaaggcc atagagagaa atcagaaaca gaatgaaaca aggacagacc cactaccact      6000
     aacagcagaa gatatagtat ttagaaaaga aaatagaaga aataagataa cgccaagatt      6060
     ttctaagcat atagttagaa cagaccacgg aataactttt gaaacgaaaa aaggacagaa      6120
     agttcataaa gaaaaaataa aaagaaaatt taaagataga caaacagttt agaacagaaa      6180
     taaaataaat aaaataaaga tataaaatac aaacaaaata ataatagaaa aaaaaaaaaa      6240
     aaaaaaaaaa acacatcacc ctgttgcaag aagcaaatag aacacacaac acgataagca      6300
     ttattaatgt aaataataat aatatttatt acaaaaaaca cacacgaaca tatatacata      6360
     taagcactac aatattaatg ttaattataa gtacactagc tacaccgcaa gtcgttccgt      6420
     caagcattcc atctcgctgg ccgtcacgac attctagggg gggaggagtt accactttca      6480
     g                                                                      6481
//
ID   Gypsy-8_DSe-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.08, Created)
DT   19-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DSe_;
KW   Gypsy-8_DSe-I; Gypsy-8_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-288
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1468-1468 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 288 BP; 99 A; 78 C; 47 G; 64 T; 0 other;
     tgttcccctg cagacttccc gtactacgcc tatgccatca accgggactc tgagcagcac        60
     caacacacac aacttacaga agtacggaga cagggacaga gcgatctact tgcggaacta       120
     tgtagcaaaa cacacacata tatatataag agctgcctgt gagcagcaca attaccacta       180
     tcaaaaaaca ttcgctttgt tcacttcaac caacgaagac gtgtttaatt ggaacagttt       240
     aaacattcca taaccaatac tactatgaaa catagttgcc ctaaccca                    288
//
ID   Gypsy-8_DSer-I repbase;    DNA;    INV; 6017 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6017
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1984-1984 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..1147
FT                 /product="Gypsy-8_DSer-I_1p"
FT                 /translation="MKMPKNSARHRRQASPEGGKQGELREGVAAMDAVDRA
FT                 VDRSFRRMEQKVDALDQSLHLKLEQKFEQMWATFERTMLGDRSGSNGSQXA
FT                 LRRGSMPPAGDDRHSASTPRVGEASNVDSGQARQVFHRGMGTGPGAAPISA
FT                 PPTACDLTSHWGILEVSDAELPPTFDGTRPWPEFQRLLDDMAEEYHWSERK
FT                 RCRKLYTSLRGRAQRFHATLPEATLRSYDAVTAAMREYFTVGKHAGYHAFH
FT                 NRMQGPRESFEDFAMELERLGRCVLGELPPATYNSIIVQRFIDGIRETGYQ
FT                 VPIISSNPRSLTEALDMACRIEAQCRRRPAAAVMTVAAVPTADHFGASRGG
FT                 NRGPHRNEMAGPSSSRSPVSSSGN"
FT   CDS           772..6003
FT                 /product="Gypsy-8_DSer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="SDARTTRVLRGLRNGAGAFRQMRPGRVTARDLQQHHS
FT                 ATLHRWDPGDRIPGPYHQQQSALADRGSGHGLPHRSTMSTTPSGRRDDCRR
FT                 RAYSRSLRRIPRRKPRPAQKRNGRPKLLPESRVVLGKLTAVNFSGRRLTSH
FT                 PESPSEYPLPTSPTPLCARNPGPDPYLCDPSPHLIAPPPPPNEQPGARHSL
FT                 PPKGIEAGLAPLLSPPPPKSAAPSQSIEPSAIRNTAXLRRPRVSSSTPQIT
FT                 DVPTGPPSKKAPGHGISLHSRNTGPSPYLCDPSPHLIAPPPPPNEQPGARH
FT                 SLPPKGVEAGLAPLLSLPPPKSAAPSQSIELAAIQNTATLRRPRVSSSTAR
FT                 RTVPTGPPSEEAQAARSQLPQEPAPGKIACRPPFCXSKEAPGHGTSLRTRN
FT                 PGPDSYLRDPSPHLIAPPPPPNEQPGARHSLPPKGIEAGLAPLLSPPPPKS
FT                 AAPSPSVESAAIQNTATLRRPRESSSTPRRTVPTGPPSEEAQAARSQLSQE
FT                 PAPGETAFRPPFCPRTSIRTTTAAEYYGTVSPPPAEEEDSDLTHVDSILSR
FT                 LFAERPPEEPPPIPLTAGNRRKPGNPELRGIQPPPSQATYTCSAASGPHLH
FT                 CLMFLQKHPVRLIVDTGAAVSLLNGSVLPERLPSTPCRVTLQGPSAEQFVA
FT                 TARVNARLEIAGRPVTHEFLLVEGSTPSLLGMDFLLRHEATVDLKDLQLRL
FT                 PWGSLPLYAPDTQHRNLLYSTAPTSIPPHSDTHVAVRCRSEKLLPLALLER
FT                 GRSSQLPPHVLLGSTLVDTSNDTNTLHLVNLSAQEYLLPAQMIVGQVEPVE
FT                 PMPTSIPEVDGAGASSHAEVPPDLPAHLHPKWTALIGRFXRVFARNDDDSG
FT                 HTDLTRHVIDTGQSRPIKQPVRRIAMARKDEVEQLVADMKTRGIIRPSTSP
FT                 WASPVVLVKKKDGSTRFCVDYRRLNDITVKDSYPLPRMDDILATMHGACWF
FT                 STMDLQSGYWQVEMDEDSRPKTAFTCDAGLFEFNVMPFGLTNAPATFERLM
FT                 DGLFSGSTRKFTLVYLDDIIVHSRTAEQHLDHLQQVFDRLQNVGLKLSPNK
FT                 CHFFRTEVNYLGHIVSRKGLRACPEKVRKVVDWPPPRNKKEVRSFVGLCSY
FT                 YRKFIPDFATIARPLHDLTEAKRSFTWSTAAHGAFEALKIKLTTPPVLTFP
FT                 APDGIFIVDADASNHGAGAVLGQRQDGQERVLEYYSKSFSAAERNYCVTRR
FT                 ELLAVVLATKHFHHYLYGRRFLLRTDHSCLRWLFNFREPEGQLARWIERLQ
FT                 QYDMDIQHRSGKQHGNADALSRRPCGDCRVCTRAEQNDGHEILFLQTQPLD
FT                 IARSQEKDPTLGLILQWVEKGERPAKPATWSESPEVKAYWHLFEQLFMDKG
FT                 LLMITTKTADPALVVPRSLQEGAIRSAHNSTTGGHFGIKKTVAKLKKRYFW
FT                 IGQTADVAIWCARCTECNARRGPTRRTVGQLQPKVLGAPFERLAIDILGPL
FT                 PTTALGNRYIAVVMCYFTKWPECIALPNQTAETVARALVQEVFCRFGVPFI
FT                 LHSDQGRNFESEVFQACLRLLDVEKTRTTPLHPQSDGMVERFNRTLLDYLA
FT                 KFVAADQRDWDQLLPLALWAYRSAPHEATGFSPSLLTLGRELRLPGELLYG
FT                 RPSPNPESYPAFVDQLQNRLRQTQQLGRRHLIAAANVNKLRYDLRSHPVEF
FT                 VVGEEVWLYAPTRRVGRCPKLQSDWIGPATVIRRHSDLVYEIRLPRKRTTR
FT                 TVHVNRLSPYRDPNPELLGQEARV"
XX
SQ   Sequence 6017 BP; 1361 A; 1904 C; 1596 G; 1152 T; 4 other;
     ttggtgccag gtgtggggtc actagggttt gcgaaaaccc tgacctatga aaatgcctaa        60
     gaattccgct cgccaccgcc gtcaggcctc acccgaaggt ggtaaacagg gagagctgcg       120
     agaaggagtc gcagcgatgg acgccgtgga ccgagccgtc gaccgctcgt tccggcgaat       180
     ggagcagaaa gtggacgcgt tggatcagtc gctccacctt aaactggagc agaagtttga       240
     gcaaatgtgg gcgacttttg agaggactat gctgggtgac cgttctggaa gcaacggcag       300
     ccagcmggcc ctccgtcgtg gtagcatgcc gccagccggg gacgatcgac attctgcgag       360
     caccccgcgc gtaggcgagg catcgaacgt ggactccgga caggcgcggc aggtgtttca       420
     tcgagggatg ggtaccgggc caggtgcagc accaatctct gcgccgccta cagcgtgcga       480
     cctaacctca cattggggaa ttttggaagt gtcggacgca gaactaccgc ccaccttcga       540
     cggcacccgt ccctggccgg aatttcagcg ccttttagat gacatggccg aggaatacca       600
     ctggtcagag aggaagaggt gccggaagct gtatacaagc cttcgagggc gtgcccagcg       660
     ttttcacgcc accctcccag aggccacact ccgctcgtat gacgccgtaa ccgccgccat       720
     gcgcgaatat ttcacagtcg gcaagcatgc cggctatcac gcctttcata atcggatgca       780
     aggaccacga gagtccttcg aggacttcgc aatggagctg gagcgtttag gcagatgcgt       840
     cctgggcgag ttaccgcccg cgacttacaa cagcatcata gtgcaacgct tcatcgatgg       900
     gatccgggag accggatacc aggtccctat catcagcagc aatccgcgct cgctgaccga       960
     ggctctggac atggcctgcc gcatcgaagc acaatgtcga cgacgcccag cggccgccgt      1020
     gatgactgtc gccgccgtgc ctacagccga tcacttcggc gcatcccgag gaggaaaccg      1080
     aggcccgcac agaaacgaaa tggccggccc aagctcctcc cggagtcccg tgtcgtcctc      1140
     gggaaactaa ctgccgtcaa cttctcgggg cggaggttga catcccaccc cgaaagcccc      1200
     agcgaatacc cgctccccac gtctcctacc cctctttgtg cacggaatcc tggaccggat      1260
     ccctacctct gcgacccttc gccgcacctc attgcgccgc cgccgccgcc caatgagcaa      1320
     cctggcgccc gccacagtct tcctcctaag ggaatcgaag ccggcctggc ccccttgctc      1380
     tcgccgccgc cgcccaagag tgccgctccg tcccagagca tagagccttc cgccatccgg      1440
     aacaccgccw cgctgcgccg accaagagtg tcgtcgagca ccccccaaat aaccgatgtc      1500
     ccaacgggcc ccccttcaaa gaaagcgccc ggacacggta tttctcttca ttcacggaat      1560
     actggaccga gtccctacct ctgcgaccct tcgccgcacc tcattgcgcc gccgccgcca      1620
     cccaatgagc aacctggcgc ccgccacagt cttcctccta agggagtcga agccggcctg      1680
     gcccccttgc tttcgctgcc gccgcccaag agtgccgctc cgtcccagag catagagctt      1740
     gccgcaatcc agaataccgc cacgctgcgc cgaccaagag tgtcgtcgag caccgcgaga      1800
     agaactgtcc caacgggccc cccctcagag gaggcgcagg ccgcccgttc acagttgccg      1860
     caggagccgg cgccaggcaa gatcgcctgc cgcccgccgt tctgccwttc aaaagaagcg      1920
     cccggacacg gcacttccct tcgtacacgg aaccctggac cggattccta cctccgcgac      1980
     ccttcgccgc acctcattgc gccgccgccg ccacccaatg agcaacctgg cgcccgccac      2040
     agtcttcctc ctaagggaat cgaagccggc ctggccccct tgctctcgcc gccgccgccc      2100
     aagagtgccg ccccgtcccc gagcgtagag tctgccgcaa tccagaatac cgccacgctg      2160
     cgccgaccaa gagagtcgtc gagcaccccg agaagaactg tcccaacggg ccccccctca      2220
     gaggaggcgc aggccgcccg ttcacagttg tcgcaggagc cggcgccagg cgagaccgcc      2280
     ttccgcccgc cgttctgccc aaggacttcg atccgaacta cgaccgccgc cgagtactat      2340
     ggaacagtat ctccgccgcc agccgaggaa gaggattcgg acctgaccca tgtggactcc      2400
     atcttgagcc gtttgtttgc cgaacgccca cctgaagaac caccacccat ccccttaact      2460
     gcggggaacc ggaggaaacc tggaaatcct gagcttcgcg ggatccagcc tccacccagt      2520
     caagctacgt atacgtgtag tgccgctagt ggcccacatt tacattgttt gatgttttta      2580
     cagaagcatc cggttcgcct catcgtcgac accggagccg ctgtctcctt actaaatggt      2640
     agcgttctgc cagaacgact gccgagcaca ccgtgccgag tgactctaca aggaccctcg      2700
     gcagaacaat tcgtggccac cgctcgagtc aacgccagac tggaaattgc cggaaggccg      2760
     gtcacccacg aattcctact ggtggagggc agcactccta gcctcttggg tatggacttt      2820
     ctgctgcgcc atgaggccac cgtggatcta aaggatcttc agttacgact cccgtgggga      2880
     tctctgccgc tatatgcccc ggatacccag catcgaaatt tgctttattc gactgcaccc      2940
     accagtatcc cgccacatag cgacacccac gtagcagtgc gatgcaggtc ggaaaaactg      3000
     cttcctctgg ctttgctgga acgtgggaga agttctcaac tgccacccca tgttctacta      3060
     ggcagcactt tggtggacac ctccaacgac accaacaccc tgcacctagt gaaccttagc      3120
     gcacaggaat acctgctacc cgcgcagatg atagtgggac aggtggagcc cgtggaaccc      3180
     atgcccacct cgatcccaga agtagacggg gccggagcat cctcccacgc agaggtgccc      3240
     ccggatttgc cggcccacct tcacccaaaa tggacggcac tgatcggccg cttccmccgg      3300
     gtgtttgcca gaaacgacga tgactcggga cataccgatt taacacggca tgtcatagac      3360
     acgggtcaat ctcgacccat taaacaacca gtgcgtcgca tagcgatggc aagaaaggac      3420
     gaggtagagc agctcgtcgc cgacatgaag actagaggca taattcggcc gtccaccagc      3480
     ccatgggcct cgccggttgt cctagtaaag aaaaaggacg gttccacacg gttctgtgtg      3540
     gattatcgac gtctgaacga catcaccgtc aaagattcat accccctacc gagaatggac      3600
     gacatcctcg ccactatgca cggagcctgc tggttctcta ccatggacct ccagagcggc      3660
     tactggcaag tggagatgga cgaggactct agacctaaga ccgcgtttac gtgtgacgct      3720
     ggtctgttcg aattcaacgt aatgccgttt ggcttgacca acgcgccagc cacctttgag      3780
     agattgatgg acggattgtt ctccggttct acaaggaaat tcaccctggt gtacctcgac      3840
     gacatcattg tacattctcg taccgccgag caacacctgg accacttgca gcaagtcttc      3900
     gatagattgc agaacgtagg gctgaagctg agccccaaca agtgtcattt ctttcggacc      3960
     gaggttaact atctgggtca cattgtcagc cgcaagggct taagagcgtg cccagagaag      4020
     gttcgaaaag tcgtcgattg gccaccacct cgaaacaaaa aggaagtgcg ttcctttgtg      4080
     gggctatgtt cttattatcg gaagtttatt ccggacttcg ccaccattgc gcgcccttta      4140
     catgacctaa cggaagctaa gcgctccttc acatggtcaa cagctgctca cggcgccttc      4200
     gaggcgctca aaatcaaact aaccacgccc ccggtgctaa cgtttcccgc tcccgatggg      4260
     atattcatcg tggatgccga cgcgtcaaac cacggtgccg gggcggtgct cggacaacgg      4320
     caagacggcc aggagcgtgt attggagtat tacagcaagt cgtttagcgc tgcggagcgc      4380
     aactactgtg taactagacg agaactgcta gccgttgttt tggctacgaa gcatttccac      4440
     cactacctat atggccggag attcctactg cgcacggatc actcatgtct ccgatggctg      4500
     tttaacttcc gggagcctga aggacaacta gctcgatgga ttgaaagact ccaacagtat      4560
     gacatggaca tccagcaccg cagcggaaag caacatggaa atgccgacgc cttgtctcgt      4620
     cgaccctgcg gtgactgccg cgtatgtacc agggccgagc aaaacgatgg tcacgagatc      4680
     ctctttctgc agactcaacc cctcgacatc gctcgcagcc aggaaaagga ccccactctc      4740
     ggattgattt tacaatgggt agagaaggga gagcgaccag caaaacctgc aacatggagt      4800
     gaaagccccg aagtaaaagc ttattggcat ttgttcgaac agctcttcat ggataaaggc      4860
     ctgttgatga ttactaccaa aacagccgac ccagctctgg tagtgcctcg ctctcttcag      4920
     gaaggagcca ttcgtagcgc ccataactcc acgaccggtg gacattttgg catcaagaag      4980
     acagttgcca agctgaagaa acgctacttt tggattggac aaacagccga cgtagccatt      5040
     tggtgcgccc gctgtacgga atgcaatgcc agaagaggac ctactcgtcg aacggtaggc      5100
     caactgcaac ccaaagttct aggcgctcca ttcgagcgac ttgcaatcga catactgggt      5160
     ccgctgccca ctacagcact aggaaaccgc tacatcgccg tagtgatgtg ctacttcacc      5220
     aaatggccgg aatgcatagc gctgcctaat caaacggctg aaacggtagc ccgagcgcta      5280
     gtgcaagaag tcttttgccg atttggtgtc ccctttatcc ttcactcgga tcaaggccga      5340
     aactttgagt cagaagtatt ccaagcttgc ctgcgcctgc ttgatgtgga aaagactcgt      5400
     acgacgccgt tgcaccctca atcggacgga atggttgaga ggtttaaccg aactctcctg      5460
     gactatctgg cgaaattcgt tgccgcagat caacgcgatt gggaccaatt gttgccgcta      5520
     gctctgtggg cctatcgatc ggccccacat gaggcgactg ggttctcgcc gtcactactg      5580
     accctgggac gtgaactcag gctaccaggc gaattgttgt atgggcgacc gtccccgaat      5640
     ccggaaagtt acccagcatt cgtggaccaa ctgcagaacc gtctccgaca aacgcagcag      5700
     ctcggacgac gacatttaat tgcggccgcc aacgtcaaca agttacgcta tgaccttcga      5760
     tcgcacccag tggagttcgt cgttggagaa gaagtatggc tatacgctcc tactcgaagg      5820
     gtaggacgat gccctaagtt gcagtcggat tggattggac ccgccaccgt catccgacgt      5880
     cactctgacc tagtgtacga gatccgctta ccgaggaagc gtaccactag gaccgttcat      5940
     gtcaaccgcc tgtcacccta tcgggatccg aatcccgaat tactcggcca ggaggctcga      6000
     gtctgagagg ggggtaa                                                     6017
//
ID   Gypsy-8_DSer-LTR repbase;    DNA;    INV; 374 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-374
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1996-1996 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 374 BP; 107 A; 96 C; 82 G; 89 T; 0 other;
     tgtaacgaaa accgctagat tagaataatc cgcgatattt gtaaccgttg gcaacgcgag        60
     aaaccgcgaa atcccttata ggcgcaattt atgagagctt ttgacagcca ggatggcctg       120
     gtctctctaa gcgctctcga tttccttctc ttcttcttac ggacgtgtcc ggagaagcac       180
     gcgtccctga tcaccaataa agaaaagcta agtaataacc accttttcca catggggcca       240
     agtgtagatt tggacgagtg agtgggtcag accgggttct cggcagccac acctaataaa       300
     aagttccgct cggctttccg taatgaactc tgcctgtggc ccaacaacaa ccacgacaaa       360
     aaaaattcgt taca                                                         374
//
ID   Gypsy-8_DSim-I repbase;    DNA;    INV; 6611 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DSim-I.
XX
NM   Gypsy-8_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6611
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1518-1518 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
CC   [3]: Sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1628..2578
FT                 /product="Gypsy-8_DSim-I_1p"
FT                 /translation="MDWLNIIAKIKKLREDFDRSFKCLNKSAPISNDTKIK
FT                 HLETLLGKYNEVRVIILDHNTKFSSLQQTQVKDIISRLKENILYVSQRHKL
FT                 QVLVPNTLNFPAELLLDVIAEERNKPTESKIVDKMAQSVVDFLKTASSLLF
FT                 EYDGKAENLQSFKDALNLLDSIKGEHETLAVNVIKTKLKGHARNLISTENT
FT                 IQEIKDKLSRTVKGESVEVLSAKLLNLQQKNKTANLYTQEVEQLTKALEGA
FT                 YISDGLKPELANKYSTTQAVKAMTRNCSIDKVKVIMQAGTFNSMNDAISKF
FT                 IDSCTEATGHSNAVLFYQNQTQRGT"
FT   CDS           3153..6398
FT                 /product="Gypsy-8_DSim-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MRPTNLNFPIYVPITYSSGNNSIILPARSQVVRKIQL
FT                 SSNEDSVLIKNQEIQKGIYVANTVATTKNAFVRLLNTNNKDQIVNIKDLQY
FT                 ESLSNYDIVQTNPEAREKTVMSQLTKNFPPQFKSTLTDLCTKYSDVFGLET
FT                 ESITTNNFYKQKLRLTDDEPVYIKNYRNPHSQLDEIQVQVEKLINNKIVEP
FT                 SVSPYNSPLLLVPKKSLPGSDKKKWRLVIDYRQINKKLLSDKFPLPRIDDI
FT                 LDQLGRAKYFSCLDLMSGFHQIELEESSRDVTSFSTSNGSYRFTRLPFGLK
FT                 IAPNSFQRMMTIAFSGLEPSQAFLYMDDLIVIGCSEKHMVKNLTDVFEKCR
FT                 KYNLRLHPEKCSFFMHEVTFLGHKCTDKGILPXDKKYDVIKNYPVPHDADS
FT                 ARRFIAFCNYYRRFIQNFAEYSRHITRLCKKDVKFEWTAECQHAFEHLKSA
FT                 LVNPNLLQYXNFSKEFCIITDASKQACGAVLTQRKKGLQLPVAYASRAFTK
FT                 GESNKSTTEQELAAIHWAITHFRPYIYGRHFTVKTDHRPLTYLFSMINPSS
FT                 KLTRMRLELEEYNFTVEYLKGKDNYVADALSRITIKELQEMNRNIKKVTTR
FT                 YQSRQKSCAGDKEIELPKQSIEKASKPNVYEVIKNDELRKVVTLHIKNMLC
FT                 FFKHGKKIIARYDVSDLYTNGILDLGHFFQRLEMQAGINKISQLKVAPWEN
FT                 IFEYVSIDTFKIMGNKILKSLRVALLNPVTLIEKLKEKEAILSTFHDDPIQ
FT                 GGHAGITKTLAKVKRYYYWKGMSKDITEYIKKCQKCQKSKVARNTITPLTI
FT                 TETPIKAFDRVIVDTIGPLPKSGNGNEYAITLICDLTKYLVAIPVANKSAN
FT                 TVAKAIYESFILKYGPMKTFITDMGTEYKNSVINDLCKYLKIKNITSTAHH
FT                 HQTVGTVERSHRTFNEYIRSYISVDKTDWDVWLKYFVYCFNTTPSIAHNYC
FT                 PYELVFGKTNNLPNQFNSITNIEPIYNVDDYAKESKYRLEVAYKRARIMID
FT                 EHKEKNKKLYDQKAKNLDIVVGDNVLLKNETGHKLDSKYTGPYKVTEIGEN
FT                 NNIIITNNKNKKQTVHKDRLKIATS"
XX
SQ   Sequence 6611 BP; 2636 A; 1166 C; 1095 G; 1706 T; 8 other;
     tggcgaccgt gacaggacwc gtataagctg tagcagaagg aaaaggaaaa aaggaagccg        60
     cttgtgataa attccaactt acatcagcaa gcactggatg tgagaagatc agcatgcccg       120
     gcattcgacg ctccgcagaa gaaaaaaaaa acttttgacc acgcaacaac ttcaacgaac       180
     aactggagcg gagaaacaat gatctgagtg agtagagtgt gagtgtgatg ggtaaaaaca       240
     ggggcggagt tcgaaataaa gcaaagaaga gaatagcgca cctaaagtgg ctattatata       300
     cgaacactcc accgccagta tggtcgaaag ctcaaaaact acaagccgag ctagaccact       360
     acgtcaaatt tcttaatgaa acaagcccaa ccacacccgc tcactcagta aatgaaataa       420
     aatgcatacc aaaaattaat aatattcaac ctacccagcc gaaaagcctt ccggaattta       480
     agaagatctg cccgaaggac tgcgagggac ccctgttcac accacattgt gaacgcactt       540
     gcaggcattg caacaccggc acccaacact aacaagagga cgttatcatc aacgtggtga       600
     gcagcccgct cactacgtca tcgagggcgt gtcagcgtgc caacaccggc gacgcccagc       660
     tgacacagga taacgtggtg tgcagcccgc ccactacgtc aacgcgggaa tagtattcac       720
     actgtggtgc gctatccgca cactacagca acggtggatc tccaacaaca aatgacaaga       780
     gggaaccgac agcgcttcaa agagckcaaa attttttttt aatagcactg tgtgcaaaat       840
     ttttttctga ttgcactgcg atgcatattt ttttttaata attataaaaa ccaattgtaa       900
     cattgagcgg aaccttttct gcccgatgag aagttcggcc tgtaaagcca aacgaaaatt       960
     taggtaggaa acctgtaaat tcatacggat gaattaattt taaatttctc accgccgcaa      1020
     ggcgtcttaa caaaaaaaaa atgatatttt aaaattaaaa aaaaaaaaac aaaatcaata      1080
     aatacaaaat aagtaaatgt catttgacaa ttctataagt aaattttacc aagacccaat      1140
     atattcagaa aatactgtat taggagaaaa actcttttca aaaatgggtc tagtagatgt      1200
     taagtcagtg gactccactg ccaatgtaat caacaaggtc gaagttgttc ctttaaacct      1260
     ggattacata ataatttgtt taattattat aacaataatt atgttgataa atacatgtta      1320
     taaaatatac aawatgcata gtaaatgcct taagaaaaga tatgtaagca gagctaatga      1380
     cttggacagg gtttgatagc tgaaaggcaa taaataaagc aaaaaataaa aaasaaattt      1440
     aacccaagta agcaaacata taactgccct gtcaaaagct tcaaaaagaa aagagaaaaa      1500
     aaaagcctag ttatgaacat ataaataaat atgaaaatat aaaatgaaat ataaaatata      1560
     attaaataaa tctttttatt aaatttatta aataaatctt tttattaaca ccccagttcc      1620
     taacttgatg gattggctaa atataatagc taaaatcaag aaactgcggg aagactttga      1680
     tagatcgttt aagtgcctca ataagagtgc accaataagt aacgatacaa agataaaaca      1740
     tttagagaca ctattaggaa aatataacga ggttcgtgtc ataatacttg accacaatac      1800
     gaaattttct tcgttacaac agacacaagt aaaagatata atatctcgat taaaagagaa      1860
     catattatat gtgtcacaaa ggcacaagtt acaagtactt gttccaaata cactaaattt      1920
     cccagctgaa ctattactag acgtaattgc tgaggaaaga aataagccaa cagaaagtaa      1980
     aatagtagac aagatggcac aatcagtagt agatttccta aaaacagcct cgtctctatt      2040
     atttgagtac gacggcaaag cagaaaacct acagagtttc aaagacgctc tgaacttgtt      2100
     agattcgata aaaggagaac atgagacttt agcagtcaat gtcattaaga ccaaactaaa      2160
     aggccatgct aggaatctca ttagcacgga aaatactata caggaaatta aagataaact      2220
     ctcgcgaaca gtaaagggtg aatctgttga ggtactctct gcaaaattac taaatctgca      2280
     gcaaaagaac aaaacagcca acctttacac gcaagaggtg gagcaattaa caaaagctct      2340
     agaaggtgct tatattagtg atggtttgaa accagaactt gcaaacaaat atagcacgac      2400
     acaagccgtc aaagcaatga cgaggaattg ctcgattgat aaagttaaag ttatcatgca      2460
     agcaggcacg ttcaacagta tgaacgatgc catatctaaa tttatagaca gttgcacaga      2520
     agcaactgga cactccaacg ctgttctgtt ctaccaaaat cagactcagc gcggtacata      2580
     acgcggtcgt tataacacaa ggggccgccc ttattacaga ggcggtcatc gttataacaa      2640
     taccaataac aataataata gaggaaactt tagaggccgt ggcaactcga accgaggcca      2700
     aaacaacaat aatcagggat atgtaagagt agcccaaaat aactcgggaa actccgaaca      2760
     ccctttagct gctcatcaat aaatagacac aaggttcaca aaattaatct tagccaaaac      2820
     atatttgtta attttgtcaa tgtagaaaca aataaaaaac ttgtcttttt aatagacaca      2880
     ggtgcagata tttcccttct aaaagaaaat tctgatatct ttaatgatat ccaaggcaac      2940
     aataaaatta atattcaagg aataggacaa gaattaattc aatccaaagg attaacttca      3000
     attgagtaca gacaggcaat tacataattc cacacgattt tcatatagta gattcacatt      3060
     tcttaatccc atgtgatgga atattaggaa ttgatttcat aaagaaattc aattgtcaat      3120
     tagattttaa tcaaacagaa gattggctca agatgagacc aactaatttg aatttcccaa      3180
     tatacgttcc aataacatac agctctggta ataactcaat aattctacca gcaagatccc      3240
     aggttgtccg aaaaatacaa ctatcctcaa atgaagatag tgttttaata aaaaaccagg      3300
     aaattcaaaa aggcatttat gttgcaaaca cagttgcaac aaccaaaaat gcatttgtcc      3360
     gattgctgaa tacaaataat aaagatcaaa tagtaaatat aaaagatcta caatatgaat      3420
     cactttcgaa ctatgacata gttcaaacca atcctgaagc aagagaaaaa actgtcatgt      3480
     ctcaattaac aaaaaatttt ccaccacaat tcaaatctac actaacagat ttatgcacca      3540
     agtatagcga tgtattcgga cttgaaaccg aatcaatcac aacaaataat ttctacaaac      3600
     aaaagctaag attgacagat gatgaaccag tatatattaa aaattataga aatcctcata      3660
     gtcaacttga cgaaattcaa gtacaggtag aaaaattaat taacaacaaa atagtcgaac      3720
     cgtctgtgtc cccatataac agcccacttt tgttagttcc aaagaaatct cttcctggtt      3780
     ctgacaagaa aaaatggcga ttagtaattg actatcgtca aattaataaa aaattgttgt      3840
     ccgataaatt cccactccct agaattgatg atattttaga tcaactaggt agagcaaaat      3900
     atttttcgtg cctagactta atgtcaggtt ttcatcaaat tgaactcgaa gaaagttcaa      3960
     gagatgtaac gtctttttca acgagcaatg gctcatatcg cttcacgcga ttaccattcg      4020
     gtctaaaaat agcaccaaat tcttttcaga gaatgatgac tatagctttc tctggacttg      4080
     aaccttctca agcattcctg tatatggatg atttaatagt tattggttgt tccgaaaaac      4140
     atatggttaa aaacttgact gatgtttttg agaaatgcag gaaatacaac ctaaggctac      4200
     atccagaaaa atgttcattt ttcatgcatg aagtcacatt tttgggacac aaatgcacag      4260
     ataaaggaat cttgccasat gacaaaaagt atgacgtcat caaaaattat ccagtcccac      4320
     acgatgcgga cagtgctaga cgatttattg cattttgcaa ttactataga cgttttatcc      4380
     aaaattttgc cgaatattct cgtcacataa caagattatg taaaaaagat gtaaaattcg      4440
     aatggacagc tgaatgccag catgccttcg aacatctcaa atcggcacta gttaatccca      4500
     atttattaca atacmcaaat ttcagcaaag aattttgcat aataacggat gcaagtaagc      4560
     aagcttgtgg agcagtgtta actcaacgca aaaaaggtct ccaacttcca gtggcatatg      4620
     catcaagagc gtttacaaag ggtgaaagta ataaaagcac aacagaacaa gaattggcag      4680
     caattcattg ggcaataact catttcagac catatattta tggtagacat ttcactgtca      4740
     aaacagacca cagaccactt acatacctgt tctctatgat aaatccgagc tctaaactaa      4800
     ctcgtatgag acttgaatta gaggagtata attttacagt tgagtatcta aagggaaaag      4860
     acaactatgt agctgatgcg ttatcaagaa taaccatcaa agaactacaa gaaatgaaca      4920
     gaaatataaa gaaagtcact acaagatatc aaagtagaca aaaatcctgc gcaggagata      4980
     aagaaataga attgccwaag caatctatag aaaaagcttc aaagcccaac gtatatgaag      5040
     tcatcaaaaa tgacgaatta cgtaaagtag tgaccttgca tataaaaaat atgctatgtt      5100
     tctttaaaca tggtaagaaa attattgcaa gatatgatgt tagcgattta tatactaatg      5160
     gaatacttga tttaggtcat tttttccaaa ggcttgaaat gcaagccggt ataaataaaa      5220
     tcagccaact caaagtggca ccgtgggaaa atatctttga atatgtttca attgatactt      5280
     tcaaaataat gggcaataaa atattaaaat cattaagagt agcgctactc aacccggtga      5340
     ccctaataga aaaattaaaa gaaaaagaag ctatattgtc tacatttcat gacgatccaa      5400
     tacaaggagg tcacgcaggc atcacaaaaa ccttggcsaa ggtcaaaaga tactattact      5460
     ggaaaggtat gtctaaagat ataactgagt acattaaaaa atgtcagaaa tgccaaaaat      5520
     caaaagtggc aagaaataca ataactcctt taacaataac agagacccca ataaaagctt      5580
     tcgacagggt gatagtggac actataggtc cgctaccaaa atcaggaaat ggcaatgaat      5640
     atgcaatcac actaatatgt gatttaacta aatatctagt tgccatacca gttgcaaaca      5700
     aaagtgcaaa tactgtcgct aaagcaattt atgaatcttt tattctaaag tacggtccaa      5760
     tgaagacgtt cattacggac atgggaacag aatataagaa ttcagttata aatgacttgt      5820
     gcaaatatct taaaataaaa aatataacat caactgcaca tcatcaccag acagttggaa      5880
     cagtcgaaag aagtcaccga actttcaatg aatatatacg ttcatacata tcggttgata      5940
     aaactgattg ggacgtatgg cttaaatatt tcgtatactg ttttaacacg accccatcaa      6000
     tagcacataa ctattgtcca tacgaacttg tctttggtaa aacaaataac ttgccaaatc      6060
     aatttaatag cataactaat atagaaccca tatataatgt agatgattat gctaaggaaa      6120
     gtaaatatag attagaagta gcctataaaa gagctagaat tatgatagac gaacataaag      6180
     agaaaaataa gaaactttat gatcagaaag caaagaactt agatatagta gtaggagata      6240
     atgttctatt aaaaaacgaa acaggtcata agttggattc caaatataca ggtccgtata      6300
     aagtaacgga aataggagaa aataataaca ttataataac taataataaa aataaaaagc      6360
     aaactgttca taaagacaga ttaaaaattg cgacgtcgta aatatttata gtatgatcat      6420
     acataggcat aaaaataaaa ataataatat taataataat aaaaaaaaaa tatttttctt      6480
     tttgaggttt tacttaaaaa ttctcactac ataaatgtac ttaaaaacaa tcataacaca      6540
     atttttaata atgtataaac tacctttaaa ataacttcat aatattacgt tatttttcaa      6600
     aaggagggag a                                                           6611
//
ID   Gypsy-8_DTa-I repbase;    DNA;    INV; 4222 BP.
XX
AC   AFFI01005368;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DTa_;
KW   Gypsy-8_DTa-LTR; Gypsy-8_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4222
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01005368; Positions    6744   10965.
XX
CC   Positions [1666-2202] - Reverse transcriptase
CC   Positions [3313-3768] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           214..4215
FT                 /product="Gypsy-8_DTa-I_1p"
FT                 /translation="MDESGDQEARSSATDQPLLSEDKKEARFQEPINTLHY
FT                 AMASVGSLEPFDVEQPQKWTTYMERFKLYVLANGVTDEAREKAAFLTLAGP
FT                 SLFDLLTSLASPKQISELKLKEIYDILTGHLSPRPSVIAAFYQFHKRDQQP
FT                 GETVSSYIAALRALAVDCQFGAALDRMLRDRFVCGMKDEGLQRAFLAETEL
FT                 SVQRAVDRASTSEAAAASALAIRHSNEAVQAIKSSPSSNFRRPNTHPGPGN
FT                 GPKCGGCGAQHSRAQCPYRDAVCHGCGRKGHIVRVCRRSAGSETPVANSSF
FT                 APEKYNRPRTSINQVVPLIEQKKAVSIIMNGRECSFEVDSGSPVTIMSESS
FT                 FNRIWPNEKPALSKCNLEFNDYQRNPIPIRGIIDVSIVYNGRRIDSLPIII
FT                 AEVNSSNLVGRNWFNAMGIRIEGVYAINHRNNIDEILDKYAHLFSSKLGRY
FT                 TGPPVSLHINPDVPPIKLGPRRIPFAIKHMVEEEIDRLCEQGILEPVEYSD
FT                 WATPLVPVIKKDGSIRICGDYKSTLNQAIKPHCHRIPAVSTLLASIEGGSI
FT                 FAKIDLAQAYQQLAVDNKSAMLQTLSTHKGAFKVNRLQFGISAAPGIFQSF
FT                 IESTLQHIPGVLPYFDDIVVMGKSEEQLAQRLEDVLDRLDKAGLRLRKDKC
FT                 KFGVSSVQFLGFQIDDMGKRPSIEKVKAISEAPAPKDKKQLQAFLGLLNFY
FT                 HVFLPQKATVAEPLHRLLDKNAHWNWRKEHDVAFRELKRLVTSDDLLVHYD
FT                 PKSQLVLACDASPYGIGAVLSHKNADGSENPIAFYSRTLSKAERGYAQIDR
FT                 EAVALIAGVKKFHDYVYGRQFTLITDHRPLLGIFARGKPVPTVISDTMLRR
FT                 SIFLNAYNFELLHREGKKMGNADFLSRCPVEPPLSKKGPQEILMLEISAKS
FT                 LVSAQQIASQTAKDPILSKVLNWVLRGWSGQQLDKEKQLHQFYIRRNELSA
FT                 IRGVLVSGNRAVIPPKLRESILQALHAPHPGIVKMKSIARSYVWWPNMDDD
FT                 IEVVVKKCGVCQQNRNEEPKTETHHWEPARGPWSRLHIDHAGPFQGRTYFL
FT                 VVDSFSKWLEVAVVPSTAAGPAVKFLTQLSATHGLPDEIVSDNGTAFTSAE
FT                 FKEFTDNNLIRHIRSAPFHPATNGQAERMVQSTKNYLRKADQKTNIDLILA
FT                 RYLFNQHTTPHSTTNRTPAELLMNRQLKTYFDKLQPQEIRFGKDTSSTNSK
FT                 HFIPGDSVWVRNYATGPKWITGQIGVQTGPISYTVRLEDDRVIRRHQDQLR
FT                 SRLPQSNQPTEDEDNPGATDPGEPVVTDSQTQKDSGEKDPYDDCEDLQSES
FT                 PPVRRSHRHRKPTEFYSSSTGC"
XX
SQ   Sequence 4222 BP; 1236 A; 1058 C; 1006 G; 922 T; 0 other;
     aaatattaaa ttggcgacga ggatgggatg cacagtcgtg tgttgttaga aaaatatagt        60
     tacagcagtt gtgcaagtct aagaaaattg cgtagcattc gctggcacaa cgtggtcgca       120
     aaccaacggt aaaattcggc agatacggta cttggaccgc agcacgtgcc ataccgtcca       180
     ttctgctacc ggcggcttgt gcgctgcgag taaatggatg aatctggtga tcaagaagct       240
     agaagctccg ccaccgacca accccttctt agtgaagaca agaaggaagc ccgttttcaa       300
     gagccaatca acacgctaca ttacgcaatg gcaagtgttg gaagcttgga accattcgac       360
     gtggagcaac cacaaaaatg gacaacgtac atggaacgtt tcaagctcta cgttttggcc       420
     aacggagtca cagatgaggc tagggaaaag gcggctttcc tcacattggc tggacccagc       480
     cttttcgatc tgttgacttc cttggcctca ccgaaacaga taagtgaact taagctgaaa       540
     gaaatctatg atatattaac cggtcatttg tcacccagac cctccgtgat cgccgcattc       600
     tatcaatttc acaagagaga tcagcaacca ggtgaaacag tcagcagtta cattgccgcg       660
     ctacgggcgt tggccgtaga ctgtcaattc ggtgcggcgt tggaccgcat gctaagggac       720
     cgtttcgtgt gcggcatgaa ggacgaggga ctgcagcgag ctttccttgc ggagacggag       780
     ctctccgttc agcgtgctgt ggaccgcgca tcgaccagtg aagccgcagc agcaagcgcg       840
     ttggccatcc gacattccaa cgaggcagta caagccatta agtcatcacc gtcgtccaac       900
     ttcagaaggc cgaacacgca cccaggcccg gggaacggac ccaaatgtgg cggctgcggg       960
     gctcagcaca gccgcgcaca gtgtccatac cgggatgcgg tttgtcacgg ttgcggccgc      1020
     aagggacaca tagtgcgagt gtgtcgccga tcagctggat cggaaactcc agttgcgaac      1080
     tcaagttttg ccccggaaaa gtacaaccgt ccgcggacat cgatcaacca ggtggtacct      1140
     ttgatcgaac agaaaaaagc tgtatccata atcatgaacg gacgcgaatg ttctttcgaa      1200
     gtcgactccg ggtccccggt gaccatcatg tcggagtcat cgtttaaccg tatctggcct      1260
     aatgagaagc cggccctgtc caagtgtaac ttggaattca acgattatca acggaaccct      1320
     attccgatca gaggaattat agatgtgtca atagtctaca acggccgtag gattgatagt      1380
     ctaccgatca ttattgctga ggtaaacagc tcgaatctcg ttggacgcaa ttggttcaac      1440
     gcaatgggta tacgaatcga gggagtatac gccatcaacc accgcaacaa catcgacgaa      1500
     attttggata agtacgctca cttattctca tcgaaactcg gccgttatac gggtccgccg      1560
     gtttcactcc acataaatcc agatgtccca cccatcaaat tgggaccacg gcgaatacct      1620
     tttgccataa agcacatggt agaagaagaa attgatcgtt tatgtgagca aggcatattg      1680
     gaaccagtag aatacagtga ttgggcaaca cctttagtgc ccgtaataaa aaaggatggc      1740
     tcaatccgca tctgcggcga ttacaagtcg acacttaatc aagccatcaa accccattgt      1800
     catcggatac cagcagtcag cacgctgttg gcatctatag agggcggatc tatcttcgcc      1860
     aagatcgatt tggcacaggc ctatcagcag cttgcggtag acaacaaatc cgcgatgcta      1920
     cagacgctgt cgacacacaa aggcgcgttt aaagtaaaca gattacaatt tggaatctca      1980
     gcagctccgg gcatcttcca gagttttatc gagagcaccc tacaacatat tcctggggta      2040
     ctaccctatt ttgacgacat agtggttatg gggaaatcag aggaacaact cgctcagaga      2100
     ctggaagatg tactagaccg acttgacaaa gccggtcttc gactccgaaa agacaagtgc      2160
     aaatttggtg tatcatccgt gcagttcctg ggattccaaa tagatgatat gggcaaacgc      2220
     ccatcaattg aaaaagtaaa ggcgatctca gaagccccag caccgaagga caagaagcaa      2280
     ctacaggcgt tcctgggctt actaaatttt taccacgttt tcttgccgca aaaggcaaca      2340
     gtagcggaac cattacaccg tttactagac aaaaatgcac attggaattg gcggaaagaa      2400
     cacgacgtgg ctttccgaga attaaaacgg ctcgtgacat cagacgacct gctagtccac      2460
     tacgatccaa agtcacaatt agtactagca tgcgacgcat cgccctacgg aataggggca      2520
     gtcctcagcc acaagaacgc agatgggtcg gaaaacccca ttgcgtttta ctctagaaca      2580
     ctctctaaag ccgagcgtgg atacgcgcaa attgacagag aagctgttgc gctcatcgcg      2640
     ggagttaaaa aatttcacga ctacgtatac ggtcgtcagt tcactctaat aaccgaccat      2700
     cgcccactgt tgggaatctt cgcgagaggc aagccagtcc caacagtaat ttccgacacc      2760
     atgttgcgcc gctccatttt cttaaacgct tataattttg aactgttaca ccgagaagga      2820
     aagaaaatgg gcaatgcaga tttcttaagc cgttgtccgg tagaaccacc attatcgaaa      2880
     aaaggacccc aagagatttt gatgttggaa atctcggcaa aatcattggt tagcgcacaa      2940
     caaatcgcgt cacaaacggc caaagacccc atactctcca aagttttgaa ctgggtgtta      3000
     aggggatggt caggccaaca attggataaa gaaaaacaat tgcatcagtt ctacatccga      3060
     cggaacgagc tctctgccat aagaggagtt ctggtatcgg ggaatagagc ggtgattcca      3120
     ccaaaacttc gcgaatcaat tctacaagcc cttcatgccc cacatcccgg cattgtaaag      3180
     atgaagtcaa tagcgcgcag ctacgtatgg tggcccaaca tggatgacga catcgaagtc      3240
     gtggttaaaa aatgtggggt ttgtcagcaa aaccgtaacg aagaacctaa aaccgaaact      3300
     caccactggg aaccagcaag aggaccttgg tcgcgcctac acatagatca tgccggtcca      3360
     ttccaaggga gaacatattt tttagtcgtc gactcattct ctaaatggct agaggtcgca      3420
     gtagttcctt caacagcggc gggaccggct gtcaagttcc tcacgcaact atcagccacc      3480
     catgggttac ccgacgagat tgtatcagac aacggtacag cgttcacatc cgccgaattt      3540
     aaagaattta cggacaataa tcttatcaga cacattcgct cggccccatt ccatccggct      3600
     accaacggtc aagcggaacg aatggtgcag tccacaaaga actacttacg gaaggctgac      3660
     cagaaaacaa acattgactt gattctggcc agatatttat ttaatcagca taccacacca      3720
     cattctacta ctaatcgcac tccggcagaa ttgcttatga accggcaact taagacgtac      3780
     ttcgacaaac tgcaacctca agagatacgt tttggaaagg ataccagttc tacgaattcc      3840
     aaacatttca ttccaggcga ttcggtttgg gtacgaaact acgctacggg accgaagtgg      3900
     ataaccggtc aaatcggagt ccaaacagga ccaatctcgt ataccgtgcg attggaagac      3960
     gatcgcgtaa tcagaaggca tcaggatcaa cttcgtagtc gtttaccaca atctaaccag      4020
     cctaccgaag atgaggataa ccccggggcg accgatccag gggagccagt tgtaacggac      4080
     tcccagacgc agaaagacag tggtgaaaag gacccctacg acgattgtga agatcttcaa      4140
     tcggaatctc caccagttcg taggtcacat cgacacagga agcctacgga attttatagt      4200
     tcctcaactg ggtgttaagg gg                                               4222
//
ID   Gypsy-8_DTa-LTR repbase;    DNA;    INV; 215 BP.
XX
AC   AFFI01005368;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DTa_;
KW   Gypsy-8_DTa-I; Gypsy-8_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-215
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01005368; Positions    6529    6743.
XX
SQ   Sequence 215 BP; 62 A; 59 C; 34 G; 60 T; 0 other;
     tgttatgtat ttgccacggc cagagttggc agccctgatc ttggcattag gccgtactcg        60
     taactgcgta cacactccag ctggcgttaa gcgataagct ttccagcagt tcccgatact       120
     cacttccata gaacacatct attatgtaat actcgcagtt aaataaacta tacttacaat       180
     ctattaacac acaatctatt aacacacgct cccca                                  215
//
ID   Gypsy-8_DVir-I repbase;    DNA;    INV; 4420 BP.
XX
AC   scaffold_12963;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DVir_;
KW   Gypsy-8_DVir-LTR; Gypsy-8_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4420
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_12963; Positions 2607611 2603192.
XX
CC   'TATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..4068
FT                 /product="Gypsy-8_DVir-I_1p"
FT                 /translation="MQMSNSASSTKKSISLPKFNPDIADADADAWCKTVDI
FT                 ILDDNPIEGSTLVMTLSGSLEGSASPWLSQICYTGMNWQNFKELFLQRFVG
FT                 METSAATLMNIFNGRPNDGECLSVYANRLVTSLLSKWKTANMEEIAVSVVL
FT                 AHTSKIDKSLQRMLYTTNIKSQDEMQQHLKAYAYGRSNGGLQPNIPMEPDR
FT                 KRSKTYGIKCHHCGNLGHKMVECRKRKYEEGNVSKNSALPKVRSAVTCFKC
FT                 GDAGHIASSCTKGVSTSGVGSHDKRINICCVSEPKGILRQSGELVPFCFDS
FT                 GAECTLIRESCAEKFSGKRINNLIVLRGIGENPVYSTMQILATVKIDQYSL
FT                 EILFHVIMDKFLKYDVLIGRDILGLGFGVSIEADKFEMYKTKTVDVLIKVP
FT                 DISYVEHLNNDRALSNTDKNRLLELLQNYADKFIEGIPQTRVTTGELEIRL
FT                 LDPNKTVQRRPYRLSIEEKEVVRNKVKELLDANVIRPSCSPFASPMLMVRK
FT                 KNGTDRLCVDYRELNANTVADKYPLPLISDQINRLSEGEYFSSLDMASGFY
FT                 QVPIHPDSIERTAFVTPEGQYEFLAMPFGLKNASSIFQRAIVRALGDLAQT
FT                 YAIVYIDDVLILAKTKEEALERLQTVLENLSRAGFSFNITKCSFLKTSIEY
FT                 LGYLVEAGQIRPNPRKIQALAELPSPQSVTQVRQFIGLASYFRQFVPKFSE
FT                 QMKALYNLTSKNNKFVWKPEYEEIRQKIVSILTNDSVLTIFDPLKPIELHT
FT                 DASSIGYGAILMHKIENRPRVIEYYSKCTTMAEAKYHSYELETLAVYNAVR
FT                 HFRHYLHGQKFIVHTDCNSLKASIKKINLTPRVHRWWAYLQSFDFSIEYRK
FT                 GERMLHADFFSRNPLPTDYKSSAKTVEMHINLAEITDDWLLAEQQRDSDIA
FT                 SITLKLRNHKMGEAISASYELRAGVSYRRIQRNGSTKCLPVIPRAFRWSVI
FT                 NNVHEAIMHLGWKKTLDKMYANYWFEKMSKYVKKFVENCITCRVSKPPSGK
FT                 PQIEMHPIPKDDIPWHTVHIDITGKLSGKNDLKEYIIVQVDAFTKFVHLQH
FT                 TLNINTENCIKAVKETVALFGVPARIIADQGRCFASTRFREFCSSQKIGLH
FT                 LIATGASRANGQVERVMSTLKSMLTAVESSQRSWQDALKDIQLAINCTTNR
FT                 VTKYSPLELLIGKEARPLGMITISDEKTIDKDLIRAQAKDNMVNNAKYDKA
FT                 RFDKNKAKIVKYKLGDHVLLKREERNQTKLDPKFKGPFEIIEILDGDRYLL
FT                 KSLTSKRTFKYAHEYLRAFPSNNVSEELIDLRDDECDNVEDIAQDTVALRE
FT                 SAVGLIHDG"
XX
SQ   Sequence 4420 BP; 1484 A; 828 C; 972 G; 1136 T; 0 other;
     tcagaagtgg gattaggcga tgcccctcca cgaggcaatt ctgacgattc gtggcgtcag        60
     cttttggaat ctcaaaatcg aaatattctt gagattatta aagcaatgca gatgtcaaat       120
     tcagcatcct caacaaagaa gagcatctcg ttgccaaagt tcaacccgga cattgcagac       180
     gcagatgcag atgcctggtg caaaactgtg gacataatac ttgacgataa tcctattgag       240
     ggcagtacac tggtgatgac cctcagcggc tccctagaag gaagcgcctc gccctggctt       300
     tctcaaatat gctatactgg aatgaactgg caaaatttta aggaattgtt tttgcaacgt       360
     ttcgtgggaa tggaaacatc ggcggcaact ttaatgaaca tttttaatgg ccgaccgaat       420
     gatggcgaat gcctctccgt atatgcgaac cgtcttgtga cctcactttt atccaaatgg       480
     aagacagcga acatggagga aattgcagtc tcagttgttt tggcacatac atcgaaaatc       540
     gacaaaagtc tgcaacgtat gttatatacg actaatatta aaagtcaaga cgagatgcaa       600
     cagcatctga aggcctatgc ttatggaagg tcaaatggag gtctacagcc aaatatccca       660
     atggaaccag atcgcaagag atcgaaaaca tatggcatta aatgtcatca ttgtggaaac       720
     ctcggacaca aaatggtcga atgtcgcaag aggaagtatg aagaaggcaa cgtgtcaaaa       780
     aactcagcat tacctaaagt tcgatctgcc gttacctgct tcaaatgtgg cgatgctggc       840
     cacattgcgt cttcatgtac gaaaggagtt tctacgagcg gtgttggatc acatgacaag       900
     cgtataaaca tctgttgtgt gtccgagcca aaaggaatcc tgcgtcaatc tggtgagctc       960
     gttccatttt gttttgactc tggagcggaa tgtacgctca tcagagagag ttgtgccgag      1020
     aaattttccg gaaaaagaat taataatttg atagttttga ggggtattgg agaaaatcct      1080
     gtgtatagca ctatgcaaat cttggctact gttaaaattg atcagtactc cttagaaata      1140
     ttatttcatg taataatgga taagtttttg aaatacgatg tattgatagg ccgtgatata      1200
     ctcggattag gctttggagt ctccatcgag gccgacaaat ttgaaatgta caaaaccaaa      1260
     actgttgatg tactaataaa agtgccagat ataagttacg tagagcatct gaataacgat      1320
     agagcattaa gcaacactga taagaatcgt ctgctagaat tattgcaaaa ctatgctgat      1380
     aaatttattg agggtattcc tcaaacgcga gtgactacgg gtgaacttga aatccgcctg      1440
     cttgacccaa ataaaactgt acaaaggcgt ccgtataggt taagcataga agaaaaagaa      1500
     gtcgtgcgaa ataaagtaaa agaattgtta gacgcaaacg ttatacgtcc tagttgctct      1560
     ccatttgcaa gcccaatgct gatggtaaga aagaaaaatg gaaccgatcg actatgtgtc      1620
     gattatcggg aactgaatgc taatacggtc gctgacaaat atccgctgcc tttgatttct      1680
     gatcaaatta atagactgag tgaaggcgaa tatttctcca gtttagacat ggcaagtggt      1740
     ttttaccaag ttccaataca cccagactct atcgagcgca ctgcttttgt caccccagaa      1800
     ggacagtatg aatttttggc catgcctttt ggattaaaaa atgcttcctc gattttccag      1860
     cgcgcaatcg tgagagcatt gggtgatttg gctcaaacgt atgccatcgt ctatatagat      1920
     gacgtgttaa ttctagcgaa gacaaaggaa gaggcacttg aaaggctaca aacggtcttg      1980
     gaaaacttgt ctagagctgg attctcattt aacattacaa aatgctcgtt cttgaaaaca      2040
     agcatagaat atttaggata cttggttgaa gcgggtcaaa ttcgaccaaa tccacgcaag      2100
     atacaagcgt tggccgaatt gccgtcaccg cagtcagtaa cgcaggtgcg acaattcata      2160
     ggcctagcct cgtattttag gcaattcgta ccaaaatttt ctgagcagat gaaagcttta      2220
     tataatctca cctccaagaa taataaattt gtctggaagc cggaatatga ggaaattcgt      2280
     caaaaaatcg tatcaatttt gactaatgac tccgttttga caattttcga tccactaaag      2340
     ccaattgaat tacatacaga cgcaagttct attggatatg gtgctatttt aatgcacaag      2400
     atagaaaata gacccagagt cattgaatat tacagcaaat gtacgacaat ggctgaagca      2460
     aaatatcatt catacgagct tgagaccctc gcagtttaca acgcagtaag acacttccgc      2520
     cattatttac atggtcaaaa atttattgtg catacagatt gcaactccct gaaagcaagt      2580
     atcaaaaaaa ttaaccttac cccaagggta catagatggt gggcatatct gcaatcattt      2640
     gatttcagca ttgaatacag gaagggagaa cgcatgttac atgctgattt tttctcgcgc      2700
     aatccgttgc ctactgatta taaatcctca gcgaaaacgg ttgaaatgca cataaaccta      2760
     gctgagataa ccgacgattg gcttctagcc gaacagcaac gagattctga cattgcttcc      2820
     ataaccttaa aattgcgaaa ccataagatg ggagaagcta tctcagcgtc gtacgaattg      2880
     agagcaggag tatcatatcg aaggattcaa agaaatggca gcacaaaatg tttgcctgta      2940
     atacctagag cctttagatg gtcagtcatt aacaatgttc acgaagccat aatgcattta      3000
     gggtggaaga aaactctaga caaaatgtat gccaactact ggttcgagaa gatgtctaag      3060
     tatgtgaaaa agtttgtaga aaattgcatt acctgtagag tgtcaaaacc accatctggt      3120
     aagccacaaa tagaaatgca cccgattcct aaagatgaca taccctggca cactgtgcat      3180
     attgatataa ccggaaaatt aagtggcaaa aacgacttaa aagagtacat catagttcaa      3240
     gttgatgcat tcacaaaatt tgttcacctt caacatacgc tgaacattaa tacggaaaac      3300
     tgcattaagg cagtcaaaga aactgttgca ctattcggag tgccggcacg catcatagct      3360
     gatcagggta gatgttttgc tagcacaagg tttagggaat tttgttcttc gcagaagata      3420
     ggtttacacc tgattgcgac gggcgccagt cgagcaaacg gccaagtaga gcgtgtcatg      3480
     agcaccttga agagcatgct cacagcggtt gagagtagtc agcgatcctg gcaagacgct      3540
     ttaaaagaca tacagctggc aataaattgc acgacaaatc gtgtaacgaa atatagtccg      3600
     ttagaattgc taatcggtaa agaggcaagg ccgttaggaa tgataacaat atcagatgaa      3660
     aaaacaattg ataaagattt aataagagca caagcgaaag ataacatggt gaataacgct      3720
     aaatatgata aggctaggtt tgataaaaat aaagcaaaaa ttgtaaaata taagcttggt      3780
     gatcatgtcc tactcaagag ggaagaacga aatcaaacga agttagatcc caagtttaag      3840
     ggaccttttg agataatcga aatacttgat ggagacagat atttattaaa gtcattgacg      3900
     agtaagcgca cgtttaagta tgcacatgag tatttgcgag cttttccaag caacaatgta      3960
     tcggaggagt tgatagattt gagagatgat gagtgtgaca atgttgagga cattgctcaa      4020
     gacactgtgg cactaagaga gagtgcggtt gggctcatac acgatggcta agaccgcacc      4080
     ataatactca cgccgtgcac aagtgctcga tcatggcgtg ctgaagcggg tgatattatg      4140
     gcgggggtca gaggttgaaa gacctgtatg gatccgctcc atgttatcgt tgctgggcag      4200
     caagagccta tagacgtgtg atgacagaac aacaacaaaa aaaaaaaaaa aaaaaaaaaa      4260
     aaaataaaaa aataaaacct acaatgaccg atgatactgc tgtttgtaaa gctattctta      4320
     aagtaaagta atgactaata aattttaccc aacaattttg actatggcat gatctaagcg      4380
     aaatgtacac acgaggacgt gtgaaatgtc aggaaggccg                            4420
//
ID   Gypsy-8_DVir-LTR repbase;    DNA;    INV; 443 BP.
XX
AC   scaffold_12963;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DVir_;
KW   Gypsy-8_DVir-I; Gypsy-8_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-443
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_12963; Positions 2603191 2602749.
XX
SQ   Sequence 443 BP; 146 A; 68 C; 98 G; 131 T; 0 other;
     tgtcgtgtat ccaataaatt attgtgagta ttattttgaa tgctaacgat taagtgttag        60
     taagaatcag agaatttgac agaaggtact gctatttaac ataactgtcc tacttgtatt       120
     agggttgcta ctgaaagcat ggtgtgagac aaaaaaagat agtctctgcc gagcatggcc       180
     cgagtgtgtt gtataacgtc cagtttgcta tagtgttgaa tgttcactaa cagtactaaa       240
     agtcagagaa gaatatagaa tgacaagagc atgagtagta tgctcgagga cgatgaaaat       300
     tattcattct aaaagtggaa gtcatagaga acagacgtgc tcgctcctaa aaatataatt       360
     attttgtgac tataacgaca ctcgggactt gctgtgctgc cagtatgcct aattgcaaag       420
     aaagtgattt ctcagttccg aca                                               443
//
ID   Gypsy-8_DWil-I repbase;    DNA;    INV; 5293 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   19-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DWil_;
KW   Gypsy-8_DWil-LTR; Gypsy-8_DWil-I.
XX
NM   Gypsy-8_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-5293
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1239..5291
FT                 /product="Gypsy-8_DWil-I_2p"
FT                 /translation="MLHDEILQLTVSELKEKLKENNLSIKGNKAELQVRLI
FT                 SFFESGVEEASFYEDSLERSLQVVNDQQEVQSIMAFTLRDIQDSLTVFDGS
FT                 QQQDVDNWLADFENCAETVKWNDLQKFIYSRQLLKGAAKLFVSSEDGLTDW
FT                 ISLKSALEREFSEKLSAKQVHKLLENRKKKQSESLIEYFYEMKSLAKKSTL
FT                 DEESVIEYIIEGIPDSKQNKTVLYQARNFRELRENMKMYEKISTEKESKWS
FT                 RSSKFEKKQQDIALNEPRCYKCGGRNHIAKNCKESEFKCFKCNKPGHKANQ
FT                 CSMQGXMFEKDSHKVQQLTQKLYNRVFKDVRFGNEVISAFFDSGSDISTIS
FT                 ESAYKRVYPVPLSSDVKELLGIGSKKIYTKGSFELDTALDGVPIKMCFHVV
FT                 RDRDTLYDGVIGNDVFEVVNATMGKQGLVFYGNTRSFGGNQVITRYSNPQD
FT                 PPPVRDVSPIEELQNTFGQILTTRVENFSSEIELSHLSIELKSKVLEIISD
FT                 YSPVKPANCPVKMKIILTDEIPVYQKPRRLSYEDQKRVDQQVKEWLEEGII
FT                 RHSVSEYSSPIVLVPKKDGEKRLCCDYRRVNQKIIRDNFPTAVIDDVLHKL
FT                 QEGRVFTTLDLCNGYFHVPVEENSKKLTSFVTQNGQFEFNFVPFGINNSAA
FT                 VFTRYIFAMLRPLINEGILMLYMDDIIIPAKNEFEGIERLKRVISLAEESG
FT                 LKIKWKKCQFLQRKVNFLGYIIENGTIKPSKEKTSAVENFPVPRDVKGVQR
FT                 YLGLTSYFRRFMKDFATIARPLTNLLRADVPFKMGIEELASFEQLKAGLSN
FT                 PPVLRLFNPRSVTEVHCDASMYGYGAILLQKDSEDQQYHPVEYMSRRTTPA
FT                 EEKYHSYELEVLAIIQALKKWRIYVMGIKIKIVTDCNAFAMTIKKRDVPLR
FT                 VARWAIFLQDFNFEIEHRSGVKMKHVDALSRVYCLLSGDSLKSKIQFAQRK
FT                 DEWISTILKVLEKGAHADYYVQYGILYKDPVKELIVIPTSMEQEIILVAHR
FT                 QGHFGVKKTVDLVEREYYIPSLWSKVEVVVRSCMECIVSESKQGRKEGFLN
FT                 VIDKGDEPLVTFHVDHVGPMELTKKRYNHILVVVDAFSKYVWLYPTKSTGS
FT                 EEVVERLQKQSELFGNPKRIVSDRGSAFTSHIFKEYCESQKIQHLVIATGV
FT                 PRGNGQVERVNRIVIALLTKLCASDPGAWYKHVGRVQQFINSSPPRSTKIS
FT                 PFKILTGTEMRTSYDLELKSMLEEELLVELQNNKSEIRDTAKRNISKMQEE
FT                 NRKTFNKCRKSASEYEVDELVAVKRTQFGSGLKLKGKYLGPYRVVRKMRHG
FT                 RYAVEKVGDGEGPKGTTTVAEYMKKWCPSFGANVEVGWP"
FT   CDS           join(140..478,482..691,695..883,887..1102)
FT                 /product="Gypsy-8_DWil-I_1p"
FT                 /translation="NSVNSWNKSYTRESETAAEILGKRKKKKAHRASTENF
FT                 WRHAVRKKKKKGNPQERQRRQHGNEPERQRHDRSKLNEVATRATTLSGQTT
FT                 RHKECANETREQHSHRRRHHPQKCARDEKSRKTKRQQEKNLREEATRHREC
FT                 EQRGTDCANDEAQRVQNRDERATLTPTAASTPRVCVTRRSRAEQRGSKTQR
FT                 VFKRAALTQTTASTIARVSGETYRVFRERRSSRRYTKRAAFTQTTASTIAS
FT                 GSSKTSALLRPTRHKEYPESSIHTNDDKEFPESNAHTDGGINPKSVCDATI
FT                 EYRGVRSDFGLREGRQQSRDTRASIN"
XX
SQ   Sequence 5293 BP; 1843 A; 843 C; 1316 G; 1290 T; 1 other;
     acttgggggc tcgtccagga atcgtttggc ggtaggacta ttcatcaatc atcaaattgt        60
     tgcagtctga gatccgttat tgtacatcag tcattaaatt gttgtacaaa aaacgttaaa       120
     tccatgggaa aaattgtgaa attcagtcaa ttcttggaat aagtcgtaca caagagagag       180
     tgagacagca gcagagattc ttggcaaacg aaaaaaaaaa aaagcacatc gagcgtccac       240
     tgaaaatttt tggcgccatg ccgtaagaaa aaaaaaaaaa aaaggaaatc cacaagagcg       300
     acagagacgg caacacggca acgaaccaga gagacaacga catgatcgtt cgaagctgaa       360
     cgaggtagca acaagagcaa caacactgag tgggcaaaca acgaggcaca aagagtgtgc       420
     gaacgagacg agagagcaac attcacaccg acggcggcat catccccaga agtgtgcgtg       480
     acgtgatgag aagagcagga aaacgaagag gcaacaagag aaaaacctaa gagaggaggc       540
     aacgaggcac agagagtgtg aacaacgagg tacagactgt gcgaacgacg aggcacagag       600
     agtgcaaaac cgagacgaga gagcgacgct cacaccgacg gcggcatcaa ccccaagagt       660
     gtgtgtgacg cgacgatcga gagcagagca gtgacgaggc agcaagacac aaagagtgtt       720
     caagagagca gcactcacac agacgacggc atcaaccatc gcaagggtga gtggcgaaac       780
     ttacagagta ttcagagagc ggcgatcaag cagacgttac accaagagag cagcattcac       840
     acagacgacg gcatcaacca tcgcaagtgg aagcagtaaa acgtagagtg cgttattgag       900
     gccgacaaga cacaaagagt atccagagag cagtattcat acaaacgacg acaaagagtt       960
     tccagagagc aacgctcaca ccgacggcgg catcaacccc aaaagtgtgt gtgacgcgac      1020
     gatcgagtac agaggcgtac gcagcgattt tggcttacga gagggacggc aacagagtcg      1080
     agatacaaga gcaagtatta actgagcaag aaagggccat aaccaaagag taaaacattt      1140
     gtataacatt gtagattgat atcaattaac ttaactcact aacgttagct taagatacat      1200
     gttcaaaatt tgttatataa tttgtttgaa tttaaattat gctacacgac gaaatcttgc      1260
     aactcacggt atctgagctt aaagaaaagt tgaaagaaaa taacttgagt attaagggaa      1320
     acaaggcaga gttacaagta agactaatat cttttttcga gtcaggagtt gaggaagcat      1380
     ccttctacga ggactcacta gagcgtagct tacaagtagt aaacgatcaa caagaggtac      1440
     agagtataat ggcgtttaca ctaagagata tacaagattc gttaactgta ttcgatggca      1500
     gccagcagca agatgtcgac aattggcttg cagattttga gaactgtgca gagacagtca      1560
     aatggaacga tttacagaaa ttcatttata gtagacaatt gttaaaaggg gctgcgaaat      1620
     tgtttgtcag tagcgaagac ggtcttaccg attggattag tctaaagtca gctttagaga      1680
     gagaattttc ggagaagttg tccgcaaaac aagtacataa gctactcgag aatagaaaga      1740
     aaaaacagag tgaaagttta atcgaatatt tttatgaaat gaaaagtttg gcgaaaaaga      1800
     gcacattaga tgaagaaagt gttatagaat atataataga gggtatacca gattcgaagc      1860
     aaaacaagac tgtgttgtat caagccagga attttagaga attacgagaa aacatgaaaa      1920
     tgtacgagaa aatatctact gagaaagagt caaaatggtc tagatcatca aaattcgaga      1980
     agaagcaaca ggatattgct ttaaatgagc caagatgcta caagtgcgga ggaagaaatc      2040
     acatagcgaa aaactgtaaa gagagcgagt ttaagtgttt taaatgtaac aagccaggtc      2100
     ataaggcgaa tcagtgtagc atgcagggaa awatgttcga aaaagatagt cataaagtgc      2160
     agcaacttac tcagaaatta tataatcgtg tctttaaaga tgttcgtttt ggcaatgagg      2220
     ttatatcagc gttttttgat tcaggtagtg atatctcgac tataagtgag agcgcgtaca      2280
     aacgagttta cccagttccc ttgagttcgg atgtgaaaga gttattggga ataggaagta      2340
     agaaaatcta taccaaagga tcttttgagt tagatacggc tttagatggt gttcctatta      2400
     agatgtgttt ccatgtagtg agagatagag atacattata tgatggggta atcggaaatg      2460
     acgtatttga ggtcgtaaat gctacaatgg gaaaacaagg attagtgttt tacgggaata      2520
     ctcgatcatt tggaggaaat caagttatta ctcgttacag taatccacaa gatccacccc      2580
     cagtacgcga tgtaagtccc atagaagagt tgcaaaacac gttcgggcag atattgacta      2640
     cgagagtcga aaacttttcg tcagagatag agctttccca tttgagcatt gagttgaagt      2700
     ctaaagtcct agaaatcatt tcggattata gtccggtcaa accagctaac tgtccagtga      2760
     aaatgaagat tatacttact gatgaaatac cggtatatca gaaaccaaga cgcttatcgt      2820
     atgaagatca gaaaagagtc gatcaacagg tcaaagagtg gttagaagaa ggaataatcc      2880
     gccatagtgt atctgagtat tcttctccaa ttgtattagt accgaagaaa gatggagaaa      2940
     agagattatg ttgcgattat agaagagtaa atcagaaaat tataagagat aattttccga      3000
     cggcagtgat tgatgatgta ttacataagc tacaagaagg tagagtgttt acaactcttg      3060
     atttgtgtaa tggctatttc catgtgccag ttgaagaaaa ctcaaagaaa cttacttcgt      3120
     tcgttactca aaatgggcaa ttcgaattca attttgtacc gttcggcatt aataattcag      3180
     cagctgtgtt tactagatat atttttgcaa tgttgagacc gttgattaat gaaggcatat      3240
     tgatgttgta catggatgat attattattc cagcaaaaaa tgagtttgag ggtattgaga      3300
     gattgaaaag agttataagt ttagcagaag agtcgggatt aaagataaaa tggaaaaaat      3360
     gtcaatttct tcagcgtaag gtaaattttt tgggatacat catagaaaat ggcaccatca      3420
     aaccgtcaaa agagaagaca agtgccgttg agaattttcc agttcctcgg gatgtgaaag      3480
     gagtccaacg ttatttgggt cttacttcat attttcgcag gtttatgaag gatttcgcta      3540
     cgatagctag gccgttgaca aatttgttga gagctgacgt accttttaaa atgggcatag      3600
     aagagctagc ttcttttgaa cagttaaaag cgggattgag taatccaccg gttttgcgtc      3660
     tttttaatcc tagaagtgtg acagaagttc attgtgacgc gagtatgtat gggtacggcg      3720
     cgattttact tcaaaaagat tcggaggatc aacaatacca tccggtagag tacatgagca      3780
     gacgaactac cccagctgag gaaaaatatc actcgtacga gttagaggta ctggctataa      3840
     ttcaagcatt aaagaagtgg agaatatatg tgatgggcat caagataaag atagtaaccg      3900
     attgtaatgc ttttgcgatg acgataaaga aacgtgacgt tccgctaagg gtggcccgat      3960
     gggctatatt cttgcaagac tttaatttcg aaattgagca tagatcaggg gtaaagatga      4020
     aacatgtcga cgcattgagt agggtatatt gtttactgtc gggagattct ttgaagagta      4080
     aaatacaatt tgcacagaga aaagatgaat ggatcagcac gattctgaaa gtgttagaaa      4140
     agggagcgca cgccgactat tacgtgcagt acggaatatt gtataaagat cccgttaagg      4200
     agcttattgt aatacctact agcatggagc aagagataat attggttgct catcgacaag      4260
     ggcacttcgg agttaaaaaa acggttgatc tagtggaaag agagtattat atacctagtc      4320
     tgtggagcaa agtagaggta gtagtgaggt cgtgtatgga atgtatcgtg agcgaatcga      4380
     aacagggtcg aaaggaaggt ttcttgaatg ttattgataa aggagatgag cccttagtga      4440
     cttttcatgt agaccatgtc gggccgatgg agttaaccaa gaaacgatat aaccacatat      4500
     tggtagtagt cgatgctttt tcgaaatacg tatggttata tccgacgaaa agtacaggtt      4560
     cggaagaagt tgttgagaga ttgcagaaac agtctgagtt gttcgggaat ccaaagagga      4620
     tcgttagtga tcgaggtagc gcttttacgt ctcacatttt taaagagtat tgcgagtcgc      4680
     aaaagataca acatttagtg attgcgacag gagttccgag aggaaacggg caagtagagc      4740
     gagttaatcg gattgttata gcattgttga cgaaactgtg tgccagtgat cccggagcat      4800
     ggtataagca cgtaggtagg gtgcaacagt ttataaactc gtcaccacct agaagcacga      4860
     aaatatcacc ctttaagata ttaactggta ctgagatgag gactagctac gatttagaac      4920
     taaagagtat gttggaagaa gagttattag ttgagttaca aaacaataag tccgaaatac      4980
     gtgacacagc gaaaaggaac ataagtaaaa tgcaagaaga gaaccgtaaa acgtttaata      5040
     aatgtcgaaa atctgcaagt gaatatgagg ttgacgagtt ggtggctgtc aagcggacgc      5100
     agtttggttc tggccttaag ctcaagggca aatatttggg accttatcgg gttgttcgga      5160
     aaatgaggca tggtcgctat gcggttgaga aagtaggaga tggagaaggt ccgaagggta      5220
     ctaccaccgt ggcagagtat atgaaaaaat ggtgtccatc attcggggcg aatgtggagg      5280
     tcggatggcc gaa                                                         5293
//
ID   Gypsy-8_DWil-LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   30-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_DWil_;
KW   Gypsy-8_DWil-LTR; Gypsy-8_DWil-I.
XX
NM   Gypsy-8_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-364
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 364 BP; 133 A; 52 C; 90 G; 88 T; 1 other;
     tgtaggatcg cggtatggta gaggtgattt cgagtgagaa cgggtatcga tgtaatatcg        60
     attaaaaacg atatacgatg gtgaggagtt gtcagtcagt ccgaagagag tcagtcgaat       120
     agagtgagcc ggtaaagttg cgtctcgaag tgtgagcagt gaaatcaaaa ataaagagaa       180
     gcattgtgaa gtaawtgata attttactac taagctaata aactaataat gaactaataa       240
     tacaaaagta caataaagct gatgaaaata aaacccagtg tgtgcaaatt aaatctcttc       300
     gacttggtga aggttgaaaa tccacagctt gcgaggctcg tccgggaaaa agctgaatcc       360
     caca                                                                    364
//
ID   Gypsy-8_HeAr-I repbase;    DNA;    INV; 4115 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-4115
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5558-5558 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..962
FT                 /product="Gypsy-8_HeAr-I_1p"
FT                 /translation="MASSGDQAQAPATVSGLSTAQRIPLIWRDRIRLWFAQ
FT                 FEAIMSPQKKGDQGMYEVLVGQLERQDLDEISDIILRPPEKNRYETLKSRL
FT                 LQVYDESEQRQVQRLLSEMELGDLKPSQLLRRMKNLAADNISDSTLRVMWT
FT                 NHLPQSIRAVLAVSDNIAKHSDLHELAVMADKILEQTQPPGAVAAISAPPP
FT                 PHASTSKSSSIEAKIEMLIEEIAELKASQSSRRDRRSFDKYQSRSRSPSRS
FT                 RHKRAPRMRSNTPRRLQGQANVCYYHRRFGADAQRCTRPCEFENGVKPTSM
FT                 AGN"
FT   CDS           929..4114
FT                 /product="Gypsy-8_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="KRRQTYFDGGKLTRALDEAGTGARNTSYRLFITDRNS
FT                 RLSFLIDTGANVSVIPRKKGGKQKPSDFCLYAANNTLISTYGEKTLQLDFN
FT                 LRRPYSWKFIIAEVSKPIIGADFLKHHQLLVDIAGQCLVDKVTKLTVKAPI
FT                 SYTSEPTVRSIDVDQPYHQLLSKFPDILRPSCMKEIPKHRVEHHIETTGPP
FT                 IHSKTRPLPPHRYLAVKKEFETMMQQGICRPSKSPWSSPLHVVPKKNGDIR
FT                 VCGDYRRLNDVTKPDRYPVPRLKDFTYLLHGKKIFSTLDLNRAYQQLPVYE
FT                 PDIEKTAITTPYGLFEFPRMCPGLKNAGQTFQRFIHQVLNGLDFAFPFIDD
FT                 VIIGSENEARHMQDLQEVLHRLNEYGITINPSKCVFGQESVKFLGYEVTSE
FT                 GIKPPLDKVNAITAYPRPETVHDLRRFIGMVNFYRDSIPNAARIQAPLNAY
FT                 LRNSKKRDKTKIDWNNEALQAFELCKASIQNAALLAHPSPSPADAISLMCD
FT                 ASNTCAGAVLQQRVNNKWIPLGYFSKKFTDTQQRYSTFDRELLSIYMSIKH
FT                 FRKMFEGRELVVYTDHKPLTYAIRKPPSDNDTQRRTRQLLFISEFTTDIRH
FT                 VSGVNNVVADALSRIETVDLPSPINYDDLSQAQERDSDIPDLLKQTNIQLK
FT                 KIVMPGTNKPIFCETSTSHVRPYLPTDFRRIAFNAVHNTSHPGVRATRKLM
FT                 QQRFFWPAMNTDIGEWAKTCTSCQRSKVLRHSRAELAAFPPSERFQHVHID
FT                 IVGPLPTSSAGHRYLLTMIDRCTRWPEAVPLREITADVIANKLYATWITRY
FT                 GCPARITTDQGRQFESQLFRDLAHLLGAERTRTTAYHPQSNGIVERWHRTL
FT                 KTALMARLESANNWIAELPTVLMGLRAAVRTDTGTSAAQLTFGQALRLPGD
FT                 FISPSPAAKAMDYSFVDHLHDVITRLTPTFRPHSSNRGMFVHNDLTTCSHV
FT                 LLRDDAVRKPLQQPYKGPYKVIERNEKYFTVQLPGRSSTISIDRLKPAYTL
FT                 NIDEDNPPAPAPAPPASDVATSRSPSPSTSNDATATRRTRSGRAVKLPVRF
FT                 ARGGV"
XX
SQ   Sequence 4115 BP; 1147 A; 1239 C; 928 G; 801 T; 0 other;
     gtggtgaccc cgacgtgatt ccgcctgcct aaccagtgtt gtctaactac tccataccga        60
     agaagacatc cttcagcatg gcgagcagcg gtgaccaagc tcaagctccg gccacagtct       120
     ccgggctatc aacggctcag cgcatcccac taatttggcg cgatcggatt cgtctgtggt       180
     tcgctcagtt cgaagccatc atgtcgccac agaagaaagg cgatcaaggc atgtacgagg       240
     tcctcgtcgg gcaactcgag agacaagacc ttgacgagat cagcgacatc atcctgcgtc       300
     cacccgagaa gaaccggtat gaaacgctga agagccggct gctgcaggta tatgatgagt       360
     ccgagcagag gcaagttcag cggcttctgt ctgaaatgga gctcggcgac ctgaagccat       420
     cacagttact acgtcgcatg aagaatctcg ccgccgacaa catctccgac tccacgctgc       480
     gtgttatgtg gacgaaccac ctgccacagt ccatacgcgc agtcctcgcc gtcagtgaca       540
     atatcgcgaa gcattcagac ctccacgagc tcgcggtgat ggcggataaa atcctggaac       600
     aaactcaacc acctggagca gttgccgcaa tttcggcccc accacctccc cacgcatcca       660
     catcaaagtc atcatccatc gaagccaaga tcgagatgct catcgaagaa atcgccgaac       720
     tcaaagcatc gcaatcgagt cgccgcgatc gcagatcgtt cgacaagtat caatcaaggt       780
     cacgctcgcc tagccgctcg cgccacaagc gcgcgccgcg catgcgtagc aacactccgc       840
     gccgacttca aggacaagca aacgtctgct attaccatcg tcgcttcggc gcagacgcgc       900
     agcgctgcac gcgtccctgc gagtttgaaa acggcgtcaa acctacttcg atggcgggaa       960
     actaacccgt gcgttggacg aggcgggaac cggcgcaaga aatacctcat accgcctatt      1020
     tataacagac agaaactccc gtctgtcatt tctcatcgat actggcgcaa atgtctccgt      1080
     gattccacga aaaaaaggcg gcaaacaaaa accgagcgac ttctgtttgt acgcagcgaa      1140
     caacacactc atctctacct acggtgaaaa aacgctgcaa ctcgacttca acctacgaag      1200
     accgtacagc tggaagttta tcatcgcaga agtcagcaaa cccatcatcg gtgcagattt      1260
     cctgaagcat caccagttgc ttgtcgacat agccggacaa tgtctagtcg acaaagtaac      1320
     gaaactcacc gtgaaggcgc caatctcgta cacatctgag ccgaccgtga gaagtatcga      1380
     cgttgaccaa ccatatcacc agttactcag caagtttccc gacatactcc gaccatcgtg      1440
     catgaaggaa ataccaaaac atcgtgtaga acatcacatc gaaactactg gtccgcctat      1500
     tcacagcaag accaggccat tacctccaca tcgatacctc gccgtgaaga aggaattcga      1560
     gacgatgatg cagcaaggaa tttgccgtcc aagcaaaagt ccatggtcca gtccgctgca      1620
     cgtcgtacct aaaaagaacg gcgatatccg cgtgtgtggc gactacagaa ggctgaatga      1680
     cgtcacgaaa ccagaccgct accccgtgcc acgactcaaa gacttcacat acctactgca      1740
     cggcaagaag atcttcagca cgttagacct aaatcgtgct tatcaacaat taccagtcta      1800
     tgaacccgac atcgagaaaa cagccatcac tacaccatac ggcttgttcg agttcccgag      1860
     aatgtgtccc ggtttaaaaa acgccggaca gacattccaa cggttcatac atcaagtact      1920
     caacggatta gacttcgcgt tcccatttat cgatgacgtc atcataggct ccgagaacga      1980
     agctcgccac atgcaagatc tacaggaagt tctacacaga ctgaacgagt acggtatcac      2040
     catcaacccg tctaaatgtg tcttcggtca agaaagcgtc aagttcctcg ggtacgaagt      2100
     gacaagcgag gggatcaagc cacctttaga caaggtcaac gccatcactg cttacccccg      2160
     acccgagaca gtgcacgact tacgtcgatt tatcggcatg gtgaacttct atcgggacag      2220
     catacctaac gctgcccgca tacaagcacc actcaacgcg tacctacgaa attccaagaa      2280
     acgcgataag acgaaaatcg actggaataa tgaagcattg caagcgttcg agttatgtaa      2340
     agccagtata caaaacgcag ctttactcgc gcatccgtct ccttctcccg ccgacgctat      2400
     ctctctcatg tgcgacgcat cgaacacctg tgccggcgcc gtgctacaac aacgtgtaaa      2460
     caacaagtgg atacctctcg gctatttctc gaagaaattc acagatacgc aacagagata      2520
     tagcacattc gaccgagaat tgctatccat ctacatgtcc ataaaacact tcagaaaaat      2580
     gttcgaagga agagaactgg ttgtttacac ggaccataaa ccgctcacct acgccattcg      2640
     caagccaccg tccgacaatg atacgcagcg acgcacgcgt cagctgttat ttatcagcga      2700
     gttcacgacg gacattcgac atgtgagcgg agtaaacaat gttgtcgccg acgcactttc      2760
     acgcatcgaa accgtcgacc taccatcgcc aatcaactac gacgacttat ctcaagcgca      2820
     agaaagagac agcgatatac ccgatttatt gaagcaaaca aatattcaac tcaagaaaat      2880
     cgtcatgccc ggtacaaaca agccaatatt ctgcgaaaca tctacgtcac acgttcgacc      2940
     gtacctacca accgactttc gtcgcatcgc attcaacgcc gtgcacaata caagtcatcc      3000
     cggggtacga gctacacgta aactcatgca gcaacgcttc ttctggcccg caatgaatac      3060
     cgacatcggc gagtgggcga aaacgtgtac atcgtgtcaa cgctcgaaag tactacgtca      3120
     cagccgagcc gaactcgcag cgttcccgcc aagcgaacgt tttcaacacg tacacatcga      3180
     catcgttggt ccgctaccta cttcatcggc tggacatcgc tacctactga cgatgatcga      3240
     tcgctgcaca cgatggcccg aagcagtacc attgcgagaa atcaccgctg acgtcatcgc      3300
     caacaagttg tatgcgacgt ggataacacg ctacgggtgc ccagctagaa taacgactga      3360
     ccaaggacga cagtttgaaa gtcagctgtt ccgtgacctc gcacatctct tgggcgccga      3420
     acgtacccgt accactgcct accacccgca aagtaacggc atcgtcgaac gctggcaccg      3480
     aaccctgaag actgcactta tggctcgctt agaaagtgct aacaactgga ttgccgagct      3540
     acctactgtg ctaatgggtt tacgagccgc cgtgcgcact gataccggca ccagcgccgc      3600
     gcagctcact ttcggccaag cattgcgctt acccggcgat ttcatatcac catcaccggc      3660
     agcgaaggca atggattata gcttcgtcga tcaccttcat gacgtgatca cgaggttaac      3720
     gcctacattt aggccacatt caagcaatcg tggcatgttc gtgcacaatg acttgacaac      3780
     atgtagtcac gtgctgctac gcgacgacgc cgtccgcaaa ccgctgcagc agccgtacaa      3840
     gggcccgtac aaggtcattg aacgcaatga gaagtacttc accgtccagc taccgggaag      3900
     atccagcacc atctcgatcg accggctaaa accggcgtac acgctcaaca tcgatgaaga      3960
     taacccgcct gcacccgctc cagctccacc ggcatcagac gtcgccacca gccgatctcc      4020
     gagtccttct acgagcaacg acgccactgc tacacgtcgc acgagatcgg gccgagccgt      4080
     gaagttgccg gtacgcttcg ctaggggggg agtac                                 4115
//
ID   Gypsy-8_HeAr-LTR repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-249
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5546-5546 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 249 BP; 64 A; 67 C; 50 G; 68 T; 0 other;
     tgtagctgca atacatacat gcgcgcgccg caacagcggg cgccccactg aagtctcgcg        60
     cgccaagcta cccatattta taacgtttcg ttcgagcgct ctcattggcc agcgcggatc       120
     gcgatagatt cgcgccctat actacgaaat cattgtaata gcatttaaat aggcaggcat       180
     tttagtaaaa tatattcatt cttacctcga ctgtggagtt taatttatct acaccttacc       240
     tgcgctaca                                                               249
//
ID   Gypsy-8_HMM-I repbase;    DNA;    INV; 4013 BP.
XX
AC   CAEZ01007955;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_HMM_;
KW   Gypsy-8_HMM-LTR; Gypsy-8_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4013
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007955; Positions    4851     839.
XX
CC   Positions [3118-3582] - Integrase core
CC   'GACCTA' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1260..3167
FT                 /product="Gypsy-8_HMM-I_1p"
FT                 /translation="MYCVACKALPSPNIYSVKIVTGVTKFHKLISEFPEVI
FT                 RPDGTTRITNTPHNTIFVPPPGPPVSCAPRRLAPDKLKIAKLEFEAMLANG
FT                 TARPSDSPWSSPLHLAPKKDNGWRPCGDYRQLNARTIPDKYPIRHIHDFSH
FT                 TIAGCTIFSTIDLVKAYSQIPIVKEDIPKTAITTPFGLYEFPYMTFGLRNA
FT                 GQTFQRFVDELTRGLDFCYPYIDDFLIFSKNEVEHEHHLRQLFTKFRDYGI
FT                 LVNTAKCIFGASEVTFLGYHISQQGTKPLESKVLAIKNFPVPTNVRQLRRF
FT                 LGMVNFYRRFLPQSAKIQASLNSLLSGSVKASHPITLKDDSLKAFQDCKDS
FT                 LCNAALLAHPDSTAKLGLVADASDLAIGSVLQQYKDGSWQPLAFFSRKLSP
FT                 SQIKYSPYDRELLAIYESVKYFRHMLEATHFTIYTDHKPLCFAFHCRKNNC
FT                 TPRQYRHLDFISQFTSDIQHISGRDNVVADTLSCIGEVQCPVDWEVIAKLQ
FT                 AADPEIQNHLKGESSLRLEKRNIPGSRTFLFCDVSTSIPRPFIPHSLRRQV
FT                 FDSIHSLSHPGANASAKLVAQRFVWPSVRKDCREWSKSCLSCQRSKVNRHV
FT                 SSPIGTFDLPTARFKHVHLDLIGPLPPSSGYKYCLYSG"
XX
SQ   Sequence 4013 BP; 1185 A; 880 C; 797 G; 1151 T; 0 other;
     taaattggtg accccgacgg tgaatagtgt aagggtgaaa ggacaaaatg agtagtgaaa        60
     gtgattcgca aaaatctgca acgtcacggc aacgtgtacg gcggtgcacg cctaaggtgg       120
     accacgtgtc gacggacata tttagagtcg gcgttcgtat cccaccgttt tggccagaga       180
     agccagcaat ctggttcgcc caaatagaag gtcaattctc aatttcaaga attactgatg       240
     atacgaccaa attttactac gtcatcggcc agctcgacaa ccaatacgcc gctgaagtcg       300
     aggatattat caccgcacca cctgaaacgg ataaatataa taagctgaaa agcgagttaa       360
     ttaagagact gtccgtgtca aaggagaaca aagtgaagca acttttaatg catgaggagc       420
     ttgggaacag gaagccctca caatttttga gacatttacg cagtctagca ggacatagta       480
     taccagaaga gttcctgaaa accatctggt cgagtcgtct tccaagctcg atgcagccaa       540
     ttatagcatc acagtctgcg ttgtccctag atgctctggc ggacttggca gaccgcatcg       600
     atgacatcgc ctcctcagta cctaatgtag cttccacgag taggacatca gacacagtgt       660
     tggatagtat gacaaagcaa atcgcggagc tcactcgcaa agtgtctgaa ctctccgcaa       720
     ctgtaaacca gcggtcgaga tcacggactc ggcagccatc tcgcagaata ggaaactcgt       780
     cctcatccag atctcggtcc agttatagga agtatcccac ctgctggtat cacatgaagt       840
     tcggcagtaa ggctaaacgc tgtgttcgtc cctgcgacta caggtcggaa aacacgcaag       900
     gcagtcagta atggcgactg atgactgcca ctctccccat ggtcgccttt ttgtaaccga       960
     tcgtaaatcg aaagtgcaat ttttagtgga cacgggaagt gatctctgtg ttttccctcg      1020
     atccgcggta cacgaatatc gtacaaaaac taattatgag ttgtgtgcag caaatggttc      1080
     tagtataagt acatatggtt atatacagct taatttaaat ttaggcctaa agcgtgtact      1140
     ttttatggaa atttattatt gctgatgtta ctaaagctat aataggcgta gattttctat      1200
     ctttctataa tttaattgta gatgtacgca atcatcgctt attggataat acaacaaata      1260
     tgtattgtgt agcttgtaaa gctttgccat cgccaaatat ttatagtgta aaaatcgtca      1320
     ctggtgttac taaatttcat aaattaattt cagaatttcc tgaggtaata cgtccagacg      1380
     gcaccacacg cataaccaac acaccacaca acaccatatt cgtaccaccc cctggccctc      1440
     cagtatcttg cgcgcctcgt aggcttgcac ccgacaagct taaaattgct aagcttgaat      1500
     ttgaagccat gcttgcaaat ggaacagcgc gtccatctga tagcccttgg tcgtcaccac      1560
     tccacttagc gcccaaaaaa gacaatggct ggcgcccatg tggcgactac agacaactta      1620
     acgcacgaac aatacccgat aagtatccca ttcgtcacat tcatgatttt tcgcatacta      1680
     tcgctggctg tacaatcttt tctactatcg acttagttaa agcctacagt cagattccaa      1740
     tagtcaaaga agatattccg aagacggcta tcactacacc gttcggtcta tatgagtttc      1800
     cctatatgac tttcggatta cggaatgcgg gtcaaacatt tcaaaggttt gtagatgagc      1860
     ttactcgtgg cttagatttt tgttatcctt atatagatga ctttttaata ttttcaaaga      1920
     atgaagtcga gcacgaacat catcttcgtc agctgtttac caagtttcga gactatggta      1980
     ttttagtcaa cacagctaaa tgcatatttg gtgcctcaga ggtaacattt ttgggatatc      2040
     atatttcaca acaaggcact aagcctttag aaagtaaagt gctagctatt aaaaattttc      2100
     ccgttcctac aaatgttaga cagcttcgta gatttctagg catggtcaat ttttacagac      2160
     gttttctccc acaatctgct aaaatacaag catcattaaa ttcactttta tcaggttctg      2220
     tgaaagcttc acatcctata actttaaaag atgattcttt aaaagcattt caggattgta      2280
     aagacagcct ctgcaacgct gctttacttg ctcaccctga ttctacagct aagcttggtt      2340
     tagtggcgga tgcatctgat ttagccatag gttcggtttt gcagcaatat aaagatggtt      2400
     cctggcagcc actcgcattt ttctcacgta agttgagtcc ttcacagata aaatattctc      2460
     cttacgatcg agagctgtta gcaatctacg agagtgtaaa gtatttccga cacatgctcg      2520
     aagctaccca ttttaccatc tacactgacc ataagccact gtgttttgct ttccattgtc      2580
     gtaaaaacaa ttgcacacca aggcaatata ggcatttaga cttcatttcc caatttacat      2640
     cggatataca gcatatctcc ggtcgggata atgtcgtcgc agacactctc tcctgcatcg      2700
     gagaggtgca gtgtcctgta gattgggaag tgatagctaa actacaagca gcagatcctg      2760
     agatccaaaa tcatcttaaa ggtgagtcat cattacgctt agagaagagg aatatacctg      2820
     gaagtcgaac tttcttgttc tgcgacgtca gcacatcgat tcccaggcca ttcatccctc      2880
     attccttacg acgccaagtt tttgacagta ttcactcttt atcgcatcca ggtgcaaatg      2940
     ctagtgcgaa gctagtagca caaagatttg tttggccgtc agtcagaaaa gactgtcgcg      3000
     aatggtcgaa gtcatgctta tcctgtcagc gctctaaagt aaatcgtcat gtttcttctc      3060
     ctataggcac atttgactta ccaacagcac gattcaaaca tgtacattta gatctgattg      3120
     gacctttacc accttcatca gggtataaat attgtttgta cagcggttga ccgctttaca      3180
     cgatggcctg aggttgttcc catagctgat attacggcgg agacagttgc taaagcattt      3240
     ttgaatgtgt ggattgctcg ttttggttgt ccttctgtta taactaccga tcgaggtaga      3300
     caatttgaat cttctttatt ccaaattcta gctaagtaca taggttttaa acaccgaaag      3360
     actacagctt accatccgca atgtaatggg ttagtggaga gattccatcg tcaattgaaa      3420
     acctcaataa tgtgtcacgg tgacaagagt tggactgaaa cattaccttt cattttatta      3480
     ggtattagga gtgcgcttaa agaagatata gaaacttctt cagctcaatt attatacgga      3540
     gaacctttgc gtctcccagg agaatttttt aattacagct ctaaaaacaa cttaacggat      3600
     tttacagatt tttcttcacg cttggaatat tttgcccaac gcttaaaacc tactgcaaca      3660
     tcaaaccatt ctaagaaaaa tatatttgtc tttaaaaacc tcaaaacgtg ttctcacgtg      3720
     tttcttaggg aagacgctct tagaggttca ttgcaaccag cttatacagg gccgcacgaa      3780
     gtaattttaa gaaaagataa gtattttata attaacgtaa aaggaaaaga cgtcactgta      3840
     tcagtggacc gccttaaacc atcatatata ctgaaagagg aatcctcgaa tgtatgtaat      3900
     tcaaagattc ctattacagc ttcttctcca aatttgaaaa cgaccagatc tggacgacag      3960
     gttaaattta ccgattttta tcgcccttag acacggtctc tggaggggag tga             4013
//
ID   Gypsy-8_HMM-LTR repbase;    DNA;    INV; 429 BP.
XX
AC   CAEZ01007955;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_HMM_;
KW   Gypsy-8_HMM-I; Gypsy-8_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-429
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01007955; Positions     838     410.
XX
SQ   Sequence 429 BP; 163 A; 103 C; 45 G; 118 T; 0 other;
     tgtgggtgac tcaataataa atcttatctt attacacaca tttatttata catatcatat        60
     atatatttat catacaataa aataacaaaa acaacacatt cacatataca ttcacactta       120
     actaacctac aacatacata catacataca tacatacata catacataca tacatacata       180
     actacataca taacaatata ataaataaat aaaataatac tcaccaatcg ctgcaactgt       240
     gccataggga caacttttaa ttacctgcag aaaaaccggt cccgcggccg agcgtcggcc       300
     gccgcacgcg caagcttgga ttcgatataa caccagtcgc gatttactgt ccgacgcgga       360
     agccctgtta ctttgtttat cctccttaca tataatatta cgacaatata attatactta       420
     acacgccca                                                               429
//
ID   Gypsy-8_LH-I repbase;    DNA;    INV; 4440 BP.
XX
AC   ADOQ01008701;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_LH_;
KW   Gypsy-8_LH-LTR; Gypsy-8_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4440
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008701; Positions    6536    2097.
XX
CC   'ATAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..1099
FT                 /product="Gypsy-8_LH-I_2p"
FT                 /translation="MKGMTTVHSPRRIRSQTPAMTAESETLRAILQELGQL
FT                 REERETEREQMQTELRLRDETLHRLEQEINQLSHSDNKERERGDYRVANFE
FT                 ECRARESINKELGYKLKPDTFDGTGSLREFLTQFDLIVRANAWNNSLKTVV
FT                 LASCLRGKARSVLNGILEIENLQFEELKSKLELRFGESHLAQTYYTQFTNR
FT                 KQKFLEDLAILGADIERLSRLAYPECTHEVRDKIACAQFIAALSDGFIKHT
FT                 LQLESVTSFKLAMERAMAVKVIQENSFPKNKFNSNKFQENTNKFDKFQYNK
FT                 QNESKKNNVNNNNKKKFLNYNKFNKYQKNKFVPRNKECWQCGAQGHFRSEC
FT                 PSFVAENKG"
FT   CDS           1810..3315
FT                 /product="Gypsy-8_LH-I_1p"
FT                 /translation="MKSQGVIEESQSPWTSPVVLVRKKDGTLRFCVDYRKL
FT                 NAVTIKDSYPLPRIQDILDRLSGNSWFSTLDLKSGYWQVKVRSEDREKTAF
FT                 SVGNGLWQFTVIPFGLCNAPVTFERLMETVLRDILSKICLVYLDDVIVFSN
FT                 SFEGMLANLRKVFLCLRLANLKINLKKCSLFGKKIKYLGHIVSEQGITTDP
FT                 EKITAVENWPIPRTKKQVRSFLGFCSYYRKFVKSFSLIAKPLFMLTEEQVK
FT                 FEWSQSCQEAFEELKRNLISSPILSFSMEQGEFILDTDASNHGIGAVLSQV
FT                 QGGTEKVIAYFSRVLSKTERNYCVTRRELLAIVESLKSFHHYLYGRKFLIW
FT                 TDHISLRWLMSFKDLEGQLARWLERLQQYKFEIVYRKRRLHQNADGLSRRP
FT                 CEELGCVYCAKVQSKENAVARIVLGEDNLEEWGQKQLEDPVISVFLQGKES
FT                 GNCPLRQKIFMLDVSAKIYLSYWDALVVKDGVLFKKWESPNFKFVVFQIIV
FT                 PRKCIF"
XX
SQ   Sequence 4440 BP; 1466 A; 647 C; 978 G; 1349 T; 0 other;
     ttttggaggc tcgtccggga tagttcggca aagaacgaaa tagatgaaag gaatgacaac        60
     tgttcattct ccgaggagaa ttcgttcaca aactccagcg atgacagccg agtcggagac       120
     gttgcgtgcg atcctgcaag agcttggaca gctccgcgaa gaacgggaaa cggaacgaga       180
     gcagatgcag acggagctcc gactgagaga tgagacgctg catcgcttgg aacaggagat       240
     taaccagcta agtcattctg ataataaaga aagagagaga ggcgattata gagtagctaa       300
     ttttgaggag tgccgtgcgc gcgaatcaat taataaagaa ttaggttata aattaaaacc       360
     agacacgttt gatggaacgg gttcgttaag agaatttttg acgcaattcg atttgatagt       420
     gcgagcaaac gcatggaata attcgttaaa aacggtagtt ttagcatcgt gcttgagggg       480
     aaaagcgcgt tcagtattaa acggaatttt ggaaatcgag aatcttcaat ttgaagaatt       540
     aaagtcaaaa ttagaattgc gatttgggga gagtcatttg gcacaaactt attacacaca       600
     gttcacgaat cgtaaacaaa aatttttgga agatttagct attctgggag cggacattga       660
     acgattgtct cgcctggctt atccggaatg cactcatgaa gtgagagaca aaatagcttg       720
     cgcacaattt atcgctgcat tatcagacgg atttataaag cacacattac aattggaaag       780
     tgtaacttcc tttaaattag cgatggaaag agctatggcc gtaaaagtta tacaggaaaa       840
     tagttttcca aaaaataaat ttaattcaaa taaatttcaa gaaaacacaa ataaattcga       900
     taaatttcaa tataataaac aaaatgaatc taaaaaaaat aatgtgaata acaataataa       960
     aaaaaaattt ttaaattata ataaatttaa taaatatcag aaaaataaat ttgtgccgcg      1020
     gaataaagaa tgttggcaat gtggtgctca ggggcacttc cggtcagaat gtccttcatt      1080
     tgttgcggaa aacaagggtt agtcgagctt tgcggggcag gttcgactaa taaaatgact      1140
     gccccggaaa aaatgtataa ttattgttat aggataaata gcgttaaaaa aaattttttt      1200
     attataatgg taaacttgat agtaaaaatt gtgaatttaa aatagatacg ggttccgatg      1260
     tttcaatttt aaatgaaaaa ttaatcaaag ggccaaagcg gcaatttgaa ataaataatt      1320
     gttttcttaa atatccaacg ggagaaactg tttcaatttg ttacaaagtt attgtcagag      1380
     tagatttggg aaagtattct ttagatattc caatactggt tgctagtatt tcagatgact      1440
     gtatattagg cactgatttt cttcaagaaa ttaatttgga aaaaattttt gagcctgtct      1500
     ttgggaattt tgaatattct aaagatgtgg ttgaatttcc atgttcgcgc atgatttcta      1560
     aagacaaagt tccctgtttc ttggaaacat tttttgagga aaattctaag aatcttgatt      1620
     tttcttaaaa ggacattttt actgaatttt ttgaatgaat ttcaagatgt attttcggag      1680
     aatttaattt caggaaattg tgaggttctt gaacatgcta ttaatataaa tgatcctaag      1740
     gcctataaaa cagctcttcg tagagttcct atacatctta ggaaagatgt aaatcaaatt      1800
     attcaggaaa tgaagtcgca aggagtaatt gaagaatctc aaagtccatg gacttctcct      1860
     gtggttttgg tgagaaagaa ggatggaaca ttaagattct gtgtggacta tagaaagttg      1920
     aatgctgtca caatcaaaga ttcttatcca ttgccacgca ttcaagatat tttagatcgg      1980
     ttatcaggaa attcctggtt ttccactcta gatttaaaga gtggatattg gcaggtaaaa      2040
     gttcgttctg aagatagaga aaagacggcg ttttccgtag ggaacggatt atggcaattt      2100
     acggttatac cgttcggttt gtgtaatgct ccagttactt ttgagcgatt aatggagaca      2160
     gttttacgag atattttatc taaaatctgt ttagtgtatc ttgacgatgt cattgttttc      2220
     agcaattcat ttgagggaat gttggccaat ttaagaaagg tttttctttg cttacgtttg      2280
     gcaaatctga agattaatct caaaaagtgt tctctctttg gaaagaaaat taagtatttg      2340
     ggacatattg tatctgaaca aggcattacc acggatcccg agaaaattac tgccgtggaa      2400
     aactggccta tccctcgaac taagaaacag gttcgaagtt ttctgggatt ttgttcctac      2460
     tataggaagt ttgtaaaaag cttttctttg atagcaaaac ctctttttat gctcaccgag      2520
     gaacaagtca aatttgaatg gtctcaatct tgtcaagagg cttttgaaga gttaaagcgg      2580
     aatttaattt cttcaccgat cctttctttt tctatggaac aaggagagtt tattcttgat      2640
     actgatgctt cgaatcacgg aattggagca gttttatcac aagttcaggg tggtactgag      2700
     aaagtgattg cctatttcag ccgagtctta agtaagacag aaaggaatta ttgtgtaaca      2760
     cgacgggaat tgttggctat tgttgaatca ctgaagtcgt ttcatcatta tttatatgga      2820
     agaaaattct taatttggac ggatcacatt tctcttcggt ggttaatgtc ttttaaggat      2880
     ttggaaggcc aactagcccg atggttggaa aggttacaac aatataaatt cgaaatagtt      2940
     tatcggaaaa gacgactaca tcaaaatgct gatgggctat caagacgtcc ttgtgaggaa      3000
     ttaggatgtg tttattgtgc caaagtacaa tccaaagaaa atgcagttgc tcgaatagtt      3060
     ttaggggaag ataatttgga agaatggggg caaaaacaat tagaagatcc cgttatttcg      3120
     gttttcctac aaggaaaaga atcgggaaat tgtcctcttc gacaaaaaat ttttatgctg      3180
     gatgtttcag caaaaattta tttatcttat tgggatgcgt tagttgtgaa agatggtgtt      3240
     ctttttaaga aatgggaatc cccaaatttt aaatttgttg ttttccagat tattgttcct      3300
     agaaagtgta ttttttaaat attggaagta gctcataact ccgcgtctgg tgaacatttt      3360
     ggagttaaca ggacattaga aaaaattcga aaacgttttt attgggctac atgtaaacat      3420
     gatgtggaag attggtgccg tttgtgcaaa atctgtgtag caaagaaggg tccttcggga      3480
     aaaggaaaat ccccactaca aatttataat gtagaagttc catttgaaag agttcagatg      3540
     gatatacttg gttttcttcc tactacttcg gttggaaatc gatatttatt ggtaataatt      3600
     gattgtttta ccaaatgggt tgaaactctt ccattaaaga atattaaagc taatacggta      3660
     gcggaagcta cagagtaatt gggaaggtcc ctataaaata attagaaaac ttagtgatgt      3720
     tgtttttgga attcagaaat cgtataggca taaaagtaaa atagtccacg ccgatagatt      3780
     ggctccattt tatatgagac aaaaattgaa ttaggagagt tttagaagag tttaggagag      3840
     tttaggaaag ttatttaaaa aaaatatctt gcatactcat ttgttttaca ggaaaagttt      3900
     gaagaatgac aacgagaaaa cgaagagagg agagaaagac tcacgagaaa ttgaaatctt      3960
     taaatgaaga ctgcctcatc cacggttttt ttttatctgt ggtttttccg gggatctttg      4020
     ggcaaatgct gaggcaggag cttgaggagt cctctttgga ggacggaggg tccacagaaa      4080
     gtttttcccc ctcttgcctg aagatcgcac attgggacaa caaaaattta tctggaacca      4140
     gtaaagtcga ttgggcctaa gatgtgccgt ccagttagga caagaagaca catcagatgc      4200
     tctggattcg acgagattgc tgaaagaatt tcggccttgc ttgggctcga cggcagtatc      4260
     ctgcatattc ctaaagagtg tttgattggg gccaaaaaat aacggcgctc ggtaatctgc      4320
     agcagcagct cagggtagag caggaagtcg ttatggctcc ttgaagtcaa cgccttggaa      4380
     cgagaggaca acgattaacc cagcgattgt cgggacgaca atttaataag gaggggacaa      4440
//
ID   Gypsy-8_LH-LTR repbase;    DNA;    INV; 313 BP.
XX
AC   ADOQ01008701;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_LH_;
KW   Gypsy-8_LH-I; Gypsy-8_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-313
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01008701; Positions    2096    1784.
XX
SQ   Sequence 313 BP; 79 A; 52 C; 69 G; 113 T; 0 other;
     tgttacgtcc ctgcggtgtt cccgatcgtt catcgagtca gcatggaaat ttattaaaag        60
     aacatcgaac gtctcgttgt catgttgttg ttgttgataa caacgacaag agagtctcgc       120
     gacagctgtc gtttcgtaca gacgtgtttg tacgacggct attactattg taattattct       180
     tgttctgttc ttattcgttg agttttatta aagttatagt tattctttaa aagtgtctct       240
     tatttcggag tgaaagtgtg agtgaacagt tgtgttacgc gcttcgatat aaatcgaacc       300
     gatgaatgta aca                                                          313
//
ID   Gypsy-8_LMi-I repbase;    DNA;    INV; 4407 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.12, Created)
DT   27-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_LMi-I;
KW   Gypsy-8_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4407
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3373-3373 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3287-3763] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1584..3197
FT                 /product="Gypsy-8_LMi-I_2p"
FT                 /translation="MAVKLELDRLHAAGVIEPVKTSVWATPLVVVLKPNGA
FT                 LRLCGDFKSTINAQAQVETYPIPRQEDLLTKLVGGEYFSKIDLADAYLQIP
FT                 LDEESQRIVVINTPFGLYKYKRLPFGISSAPAIFQRYLEQLTMPIPGCANY
FT                 LDDVIVTGATRQEHLHNLRTLFTTLRDAGLRCRLHKCQFFQEQVEYLGYLL
FT                 SKDGIQPTDRNVSAVDALPRPQNLQELQAFLGKVNYYAKFLPQAAHIMHPL
FT                 NRLRKKGVQFRWSDACEHSFTQLKHLLRSAPCLTPFSPSRPLVLAADASPY
FT                 GIGAVLAHRNDDGTEQPIAYASKTLTPAQKNYSQIEKEALAIVYAVKKFHV
FT                 YLFGAKFTLITDHKPLVALFGPHSRLPERTAQRLQRWALFLSSYNYTIKYK
FT                 PTTQHANADALSRLPSGPDPAFDRHEVSCFHIDLERQNTLDGFPITATRIA
FT                 ADTRQDPLLQRVIIMCFMGGPHTSRNRRIHSYGPGPISLIDCLSLMVFSCS
FT                 MQRAIPTGWLSHLPYAHRFLIFSIGGMSRMKSLARRHVYWPG"
FT   CDS           3347..4264
FT                 /product="Gypsy-8_LMi-I_1p"
FT                 /translation="MWLIVIDAYSHYPYVVSMASTTTTATLNALTQILAIE
FT                 GLPRTIVSDNGPQFTATAFEQFCDANGIKHLFSPPFHPASNGAAERLVRTF
FT                 KQQMLKSVGTSTTTAALTLFLSTYRTTPIQDRSPAELLHGRQPRTLLHLLA
FT                 PQPSEPRTRYTGRYAPGSTVWARSYGTKPSWVPATVVAAHGRRLFSVNTQR
FT                 GLERRHTNQLRPRXPASPQPVAHPDLEPPPLPIPQPHGYNLRSRALSRLQS
FT                 MQVRRWHTLIRNCAHRADHPRHTSTTGAPYALRGSVGDPRGHGHGGGDLAS
FT                 TFTLSAIASHTDAS"
XX
SQ   Sequence 4407 BP; 958 A; 1390 C; 1023 G; 1032 T; 4 other;
     ataattggcg acgaggtaaa aggttacatc acgtctcatg gacgaacgac ttgtgcaact        60
     cgtggagcag caacaacaac agctgctcct acagcagcaa caaactgatt tgttacgaca       120
     ggaaattcaa cttttggcgg aacgcttaca ggttcagggt tcacaaaccg tccaagcggt       180
     tgtcacgtcg tcgacggatt tccgcccccc agcgtttccg ccatttaacg acaccaaaga       240
     ggattgggat acttacttac agcggctgaa acagcacttt gccgcatttc aggtctctga       300
     tgacgcccta caacggtcgc tttttctttc ttgggcttcc cccgagacgt ttttcttact       360
     gaagaagttg gcccccctct ccaatccggt ggcactgacg ttcgaggaaa tgtgcgcatt       420
     gctttcaaat tattattcgc aacgatttca cgttgtcaca tcgcgcctcg aattccatca       480
     gtaccacaaa cagccaggtc aatcatatcg gtcatgggtg acggatttgc aaggactgag       540
     tcggcgttgc gatttcactg ctccaacccg tcttgtaaaa cctcctatgc agactctctc       600
     atccgtgatg ttgtcgttca gctggctcca gatccagaag tgcggacggc agccctcaag       660
     ctggacgacc cctctctgga ggacatcctg aagattgcac attctttcga gatagcacag       720
     gcggcgaatg agcgcctcat ggctcgtcct caggtagcaa ctgtacaacc gccacaaagg       780
     ggacgtaacg ttcggaaggt cttgccccgc cggcagcgtc gtgatccatc cctctctgac       840
     gtgtccatgg cctctgaaca gccggtcact cctcgtcggc gtaagcaacg tggtttaccg       900
     tcctgtcctg actgttttac ggcgcaccaa cgggcagact gtccagaccg ctgggcccac       960
     tgtagtcgtt gtggaaaaga tgggcatctc cgttctgttt gtcggcaaac ggcaggacag      1020
     tcaccccgac tcctcactgg cgtcagggga cagttcatga actgcaggcc atcgttcccc      1080
     agggtgattc tcccgctacc aaattgttta ttgatctcag aatagctaac caagacgtcc      1140
     gcttccaagt ggacacaggg gcgacagtct ccctggtgaa cctcccgacg tatgcccgtc      1200
     tcggctaccc agcattggac ccgccctccc gcaggttggt agcatatggt gacagctcta      1260
     tccctctgaa aggtcaattt accactttgg cagcttacaa aacggtcaca cgtcctgtaa      1320
     ccctctttgt tgtcaatagc cactcagctg gaaacatttt cggcctcgat gcattctcac      1380
     tgtttgggtt ctccatcaca gatgaggtgc aggtcatctc agacacagtt cctttccagg      1440
     aactcgacga cctttgtgcc tcttttgcgt ctctgtttga acctggtccg gggtgtgcca      1500
     ccaattttga ggcacatatt actttacgcc cagatgcggt gccccgtttc tgccgtgcac      1560
     gccctcttcc ggtctcccta cggatggctg tgaagctgga actagaccgt ctgcacgcag      1620
     ctggagtcat cgaacctgtc aaaacgagtg tctgggccac accactggta gtggtactca      1680
     agcccaacgg cgccctccgc ctctgtggcg attttaaatc caccatcaat gcccaggcac      1740
     aagtcgaaac ctaccccatt ccacgtcaag aggacctcct cacaaagctt gttggaggcg      1800
     aatacttttc taagatagac ctggctgacg catatttgca aatcccgctc gatgaggaat      1860
     ctcaacgaat cgtggtcatc aatacmcctt ttggccttta caaatacaaa cgtttgccct      1920
     ttgggatttc ttcggckcca gccatcttcc agaggtatct ggaacagtta accatgccta      1980
     tacccggttg tgccaactac cttgacgatg tcatcgttac tggggctaca cgccaggagc      2040
     acttgcataa cctccgcact ctctttacta cgttgcggga tgccgggctc aggtgccgcc      2100
     tccataaatg ccagtttttc caggaacagg tcgaatacct tggctacttg ctctccaaag      2160
     acggaatcca gcccacagat cgcaatgttt cggcggtcga tgctctacca cgcccccaaa      2220
     acctacagga gttgcaggcg tttttgggaa aggtgaatta ttatgcaaag ttcctcccac      2280
     aagcagccca cattatgcac ccactcaacc gtctgcggaa gaaaggtgtg cagttccggt      2340
     ggtcagatgc ctgtgagcat tcctttacac agctaaagca cctgttgcgt tcggcaccct      2400
     gccttacgcc cttttctcca tcacgtcccc ttgttttggc agcggacgca tctccctatg      2460
     gcattggagc agtgttggca caccgcaatg atgatggtac tgaacaaccg atagcctatg      2520
     cgtccaagac actgacacct gctcaaaaga actactctca gatagaaaag gaggcgttgg      2580
     cgatcgtcta tgctgttaag aaattccatg tgtatctttt tggggccaag tttaccctca      2640
     ttacagacca caaaccgttg gtagctctat ttgggccgca ctctcggctc ccagagcgta      2700
     cagcccaaag actccagcgt tgggctcttt tccttagttc atacaactac accattaagt      2760
     acaagcctac tacacaacat gccaatgcag acgctctttc tcgtctgccc tcaggacctg      2820
     acccagcatt cgaccgacac gaagtctcct gtttccacat tgacctggaa cggcaaaata      2880
     ccttagatgg gttccccatc acggccacgc gcattgctgc ggacacacgc caggaccctc      2940
     tcttacaacg ggtcatcatc atgtgcttca tgggtggccc acatacttcc cgaaatcgac      3000
     ggattcacag ctacgggcct ggtcccatct ctctcatcga ttgtctgtca ttgatggtgt      3060
     tctcctgctc gatgcagagg gcgataccca ccgggtggtt atcccacctg ccttacgccc      3120
     acaggttctt gatcttctcc atcgggggta tgtcacgtat gaaatccctg gccaggaggc      3180
     acgtttactg gccaggctga acaaagatgt ggaggccatc gtccgccatt gctccacttg      3240
     tgctaagcac caggctgctc cggcccaatc tttctctccc tggcctgctc cacgtcgccc      3300
     ttgggaccgc atccatcttg actttgcggg cccctttctg ggatctatgt ggcttattgt      3360
     catcgatgca tattcccact acccctatgt ggtcagcatg gcgtccacca ccacgactgc      3420
     cacactcaat gccctcacac aaattcttgc tatcgagggt ctaccccgta ccatcgtatc      3480
     tgacaatggg ccccagttta cagcgacggc ctttgagcag ttttgtgatg ccaatggcat      3540
     caaacacctg tttagtcccc cattccaccc agcctccaat ggcgctgctg agcggctggt      3600
     gcgaacattc aaacaacaaa tgttgaaatc cgtgggcacg tccaccacca cagcagccct      3660
     cacattgttc ctgagtacct acagaactac ccctatccag gatcgtagcc cggcagaact      3720
     cctccatgga cgacagccac gcacccttct ccatctcttg gccccacagc cctcggaacc      3780
     maggacccgg tacactgggc gatatgcccc aggttccact gtgtgggccc gttcctatgg      3840
     aacaaagccc tcatgggtgc cggctacagt agtggccgct cacgggcgac gcctcttctc      3900
     tgtcaacact cagaggggtt tggagcgccg acatactaac caactccgtc cccgtttmcc      3960
     tgcgtcaccc caaccagtag cccacccaga cttggagccc ccaccattgc caatccccca      4020
     accccacggg tacaatctgc gctctagggc attgtcgcgg ctccagtcga tgcaggtacg      4080
     gaggtggcac actctcatcc gcaactgcgc tcacagggca gatcaccctc gacacacctc      4140
     aaccacaggg gctccatatg cgcttcgggg cagcgtcggc gaccccaggg gacacgggca      4200
     tggaggtgga gacctcgcct ccacattcac cctctcggca atcgcctccc acaccgacgc      4260
     atcctagcac ctatccggag gccccacatc cgttccctga cttggcgggc tctgcaaccg      4320
     ggacaccact cgtgccatca gtccaccttc cgaagcaccg tcctgggcgc ttccgtccct      4380
     acgcgcccat ttcagggggg agggatc                                          4407
//
ID   Gypsy-8_LMi-LTR repbase;    DNA;    INV; 417 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.12, Created)
DT   27-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_LMi-I;
KW   Gypsy-8_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-417
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3374-3374 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 417 BP; 59 A; 129 C; 123 G; 106 T; 0 other;
     tggtatcccg gcacgatgag tttgagagcc cgccagacca catggactgc gacagcggcc        60
     gttaggcggc gcgcacaacc tacgagcgct gccatcgcca ctagagcgct gcacgcagtg       120
     gcgcgcctac cgcgccggtc atctgcgcag agagccgcac tatttagggc ccggagccgc       180
     agctcgctcc tcagtcgtgt gttgactgcg ctcgtatacg ttcgtgcact cgttgttgtc       240
     tggcatcgta cttggctacg tcacggtctc gattggctta cgctttggtc tgtctttcca       300
     tttagttgtt gtcattgttt gtcgcctctg tggtctcgtg tagtgttatc gttagcggcg       360
     acgctcggtc ggtcggtcgt cgcagtcgct cccgacccag tccgaccttc ggtcaca          417
//
ID   Gypsy-8_MeUr-I repbase;    DNA;    INV; 4346 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-4346
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3043-3043 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..1146
FT                 /product="Gypsy-8_MeUr-I_1p"
FT                 /translation="MDKFLFEFKILPGSDGKSNVYCITSITTSDNKVYAIP
FT                 EELQSAGFHKDIIKTAAYTKVKNSLKKRYQTRKIWITMTEELKEAYIDEDG
FT                 NLQFKEQYLEEVSQGQTNQETGTLERLFEKLVQNTQETRQQSLKNIAEKFV
FT                 IEKFTSRNSNARQWMDFFEQECLRFDVTEDEKKIEILRLFMDKSCTDWYSS
FT                 MVIKFTMNSEWTIWKKKFCDTFTNKGWNQVNYALLFKYKDGLLVDYAVKKE
FT                 KLLLDMRRSIDTGTLIDLIAGGLPDFILCKIDREKLKDTVDMFNELSNYEY
FT                 LVKRKKYSSYKVYSNTKSNNRDENRISCEICKKLNKGIRYHPESVCWFRTR
FT                 DDDRVRVENFKHVNNSVIEAELNENHQKN"
FT   CDS           1131..4304
FT                 /product="Gypsy-8_MeUr-I_2p"
FT                 /note="reverse transcriptase, ribonuclease H, and
FT                 integrase."
FT                 /translation="KSPKKLIVTPLINVKLLLNNTLEIYGVYDSGSNVSLI
FT                 NSKLLNLKGKNNNLNEANLVTINGVRKTNGLTTLKIKIFQIEENVEVYIIN
FT                 EPNFKYDFLIGLDMIKKFKLIQTEDLKINQKQCLSKESKDCVKQENSIKLN
FT                 RYTEDESIENKKTKEYKINFNEHVKEEDFEIKISHLNKYQKSEINKLVNNY
FT                 NSVFAKNKYDVGTVNKYEARIDLLIDKYCSKRPYRCTTEDKKEIEEQIAKL
FT                 LDSKLIEESYSPFAAPVTLAFKKEENKKSRLCIDFRDLNKIVVPQAQPFPL
FT                 IDDLITKARDCNFFSTLDINSAFWSIPLRVEDRKKTGFVTQEGHFQWTCLP
FT                 FGLKTAPAIFQRILSNILRKYKLADFAVNYIDDILIFSKSFDQHIHHLTQL
FT                 LEAIKIEGFRLKFTKCTFASNSVKYLGHVIKNNSVKPVKDNLISIKDFPVP
FT                 KTQKNVRQFLGKINFYHKYIPSSAIILDPLHNLLRKNQKFIWSDECQRTFE
FT                 KIKSLLCSQPVLEIFDEDLPINIYTDASIEGVGAILKQVQPDGSEKPVAYF
FT                 SKKLNEAQKKKKAIYLECLAIKEAVKFWQYWLIGKTFTVYSDHKPLQNMNL
FT                 KSRTDEELGDLTYYLSQYDFNIKYTPGKQNLEADCLSRNPVLESSENLDEQ
FT                 LKIVNLINVEDILIDQNKNENIQKNKDNMIQKQNVYYKKVRGKEKIILSED
FT                 FSVNFFKNIHDKLCHIGIKQMEKTINPFYISKNLTKNIKNVCKNCEVCIRN
FT                 KSRGQEKFGFMSHLGPATKPFEIMSIDTIGGFGGSRSTKKYLHLLVDHFTR
FT                 YAFILTSKTQNANDFIKLVMNIAETEDIGMLLTDQYPGINSREFKIFLKNK
FT                 KIPMIFTAVNAPFSNGLNERLNQTLVNKIRCKINEKGVKKAWTTIAHECVS
FT                 RYNQTIHTVTGFSPSYLLYGTDVTIIPEELKQEKTHNDWIRDRTTALQNTI
FT                 KSHNYNKMLFDKNRKHIEFNVGDKVYVENGNKLNRKKLDELKIGPFDIIEK
FT                 ISKTIYRIDTNHKKTDTNIFHITKLIPIPVKEDKEKGEKDAVDEKKGCKNV
FT                 Y"
XX
SQ   Sequence 4346 BP; 1857 A; 548 C; 729 G; 1212 T; 0 other;
     aaacgacatt tttgtttata aaaacagaag atggataaat ttctatttga attcaaaata        60
     ttaccaggca gcgatggaaa atcaaatgtc tattgtatta cctcgataac tacgagtgat       120
     aataaagtat atgctatacc agaggagctt caatctgccg gttttcataa agatataata       180
     aaaacagccg cttataccaa ggtaaaaaat agtcttaaga aaagatatca aactcgtaaa       240
     atttggataa caatgacaga agaacttaaa gaagcgtata ttgatgaaga tggtaatcta       300
     caatttaagg aacaatatct agaggaagtg agtcaaggac aaactaatca agaaacaggt       360
     actttagaaa gattatttga aaaattggtt caaaatactc aagagactag acagcaaagc       420
     ttaaagaata ttgcagagaa atttgtgatt gaaaaattta caagcagaaa ttcgaatgca       480
     agacaatgga tggatttttt tgaacaagaa tgtttacgct ttgatgtgac agaagatgag       540
     aaaaaaattg aaatactgag gttatttatg gataagagtt gtactgattg gtacagttct       600
     atggttataa aatttaccat gaattcagaa tggacaatat ggaaaaagaa attttgtgac       660
     acatttacta acaaaggatg gaaccaagtt aactacgcac tattatttaa atataaagat       720
     ggattattag tagattatgc tgtaaagaaa gaaaaacttt tacttgatat gagaagatca       780
     atcgatacag gtactctgat agatcttata gcgggaggtt tgcctgattt tatattatgt       840
     aaaattgata gagaaaaatt aaaagataca gtggatatgt tcaatgagtt gagtaattat       900
     gagtatttag taaaaagaaa aaaatattct agctacaaag tatatagcaa tactaaaagt       960
     aataataggg atgaaaatcg aatctcatgt gaaatttgta aaaaactcaa caaaggtatc      1020
     cgctaccatc ctgaatctgt gtgctggttc cggacgagag acgatgatag agtaagagta      1080
     gaaaatttta aacatgtaaa taactctgta atagaagcag agttaaatga aaatcaccaa      1140
     aaaaactaat agtgacacca ttaataaatg tcaaactgct attgaataat acattagaaa      1200
     tatatggagt gtatgattca ggttcaaatg tttcccttat taattctaag ttgttgaatt      1260
     taaaaggaaa aaataataat ttaaatgaag ccaatttagt aacaattaat ggtgtcagga      1320
     agacaaatgg tttgacaact ttaaaaatta aaatttttca aatagaagaa aatgtcgaag      1380
     tgtacataat taatgaacca aatttcaaat acgatttttt gattggatta gatatgataa      1440
     aaaaattcaa actaatccaa actgaagatc taaaaataaa tcaaaaacaa tgcttaagca      1500
     aggaaagcaa agactgtgtg aagcaagaaa attctataaa attaaacaga tatactgaag      1560
     atgaaagtat agaaaacaaa aaaacaaaag aatacaaaat taattttaat gaacatgtga      1620
     aagaagaaga ttttgaaata aaaataagtc atttaaataa atatcaaaaa tctgaaataa      1680
     acaaactggt taataactat aattcagttt ttgcaaaaaa taaatatgat gtcggaacag      1740
     ttaataaata tgaagctaga atagatttat taatagataa atattgtagt aaaaggccat      1800
     atagatgcac tacggaagat aaaaaagaga tagaagaaca aatagcaaaa ttactggaca      1860
     gtaagcttat agaggaatcg tatagcccat ttgcagcacc tgttactttg gcatttaaaa      1920
     aggaagaaaa taaaaagtct agactatgca tagacttcag agatttaaat aaaatagtgg      1980
     tacctcaagc tcaaccattt ccattaatag atgatttaat aactaaggcc agagattgta      2040
     attttttttc aactctggat ataaattctg cattttggtc tatcccttta cgagtagaag      2100
     atcggaaaaa gacagggttt gtaacacagg aaggacattt ccaatggact tgtctaccat      2160
     ttggactaaa aacagcacct gcaatttttc agagaatatt aagtaatatt ctaaggaagt      2220
     acaaacttgc agattttgcg gttaattata tagatgatat cctaatattc tctaagtctt      2280
     ttgatcaaca tattcatcat ctaacgcagt tgttggaagc aataaaaata gagggtttca      2340
     gattaaaatt tacaaagtgc acatttgcat caaactcagt aaaatacctg ggtcatgtga      2400
     ttaaaaataa ttctgtcaaa ccagtgaaag ataacctaat ttcaataaag gatttcccag      2460
     ttccaaaaac acagaagaac gtaagacaat ttttaggtaa aatcaatttt tatcataaat      2520
     atataccaag cagtgctata atattagatc cattacataa tttactgaga aaaaatcaaa      2580
     aatttatttg gtctgatgaa tgccaaagaa cttttgaaaa aataaaaagt ctcctatgct      2640
     ctcaaccagt tctagaaatt tttgacgaag atttaccaat taatatttac acggatgctt      2700
     ctatagaagg tgttggagca attttgaaac aggtacaacc cgatggtagt gaaaaaccag      2760
     tggcatattt ttcgaaaaag ctaaatgaag cccaaaaaaa gaaaaaagct atatatttgg      2820
     agtgcttagc tatcaaagaa gcagtgaaat tctggcaata ttggttaata ggaaaaacat      2880
     ttacagttta ttcagatcat aagccattac agaacatgaa cttaaaatcg agaaccgacg      2940
     aggaattggg tgacttaaca tattatttat cacaatatga ttttaacata aaatatactc      3000
     cgggaaaaca aaatttggaa gcggactgtc ttagcaggaa ccccgtattg gagtcaagtg      3060
     aaaatttaga tgaacaacta aagattgtaa acttgattaa tgtagaagat atcttaatcg      3120
     atcaaaataa aaatgaaaac atacaaaaga acaaagacaa tatgatacag aaacaaaatg      3180
     tatattataa aaaagtgaga ggcaaagaaa aaattattct atcagaggat ttcagtgtaa      3240
     atttttttaa aaatatacat gacaagcttt gtcatatagg cataaaacag atggaaaaga      3300
     ctataaatcc tttttatata tccaaaaatt taacaaaaaa tataaaaaat gtctgtaaaa      3360
     actgtgaagt gtgtataaga aataaatcaa gaggacagga aaaatttgga tttatgtctc      3420
     acttaggtcc ggccacaaag ccatttgaaa taatgtctat agatacaatt ggaggttttg      3480
     gaggttcaag atccacaaag aaatacctac acttgttagt agatcacttc actagatacg      3540
     catttatttt aacgtcaaag actcagaatg caaatgattt tattaagtta gtcatgaaca      3600
     tagctgaaac agaagatatt ggtatgctcc ttactgacca atatccaggg ataaattcaa      3660
     gagaattcaa aatatttttg aaaaacaaaa agatacctat gatatttact gcagtaaatg      3720
     caccattctc gaatggccta aatgaaagat taaatcaaac gttggtaaac aagattagat      3780
     gcaaaataaa tgaaaaagga gttaaaaaag cgtggacaac aatagcacat gagtgtgtta      3840
     gtagatataa ccaaactatt catacagtaa ccggtttctc gccaagttat cttttgtatg      3900
     gaacagatgt aacgatcata ccagaagaat tgaagcaaga aaaaacacat aatgactgga      3960
     tcagagatag aacaacagct cttcagaata caataaaatc acataactac aataaaatgt      4020
     tatttgacaa gaataggaaa catattgaat ttaatgtagg agataaggtg tacgtggaaa      4080
     atggcaataa gttaaacagg aaaaaattag atgaactgaa aattggaccg tttgatatta      4140
     ttgaaaaaat ttctaaaaca atttacagaa ttgatacaaa tcacaagaaa acagacacaa      4200
     acattttcca tatcacaaaa cttattccta tacctgtgaa agaagataaa gaaaaaggag      4260
     aaaaagatgc agtcgatgaa aaaaaaggat gtaaaaatgt atattaagaa aatttaccca      4320
     taattttctt ccccaagggg gggaga                                           4346
//
ID   Gypsy-8_MeUr-LTR repbase;    DNA;    INV; 344 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-344
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3061-3061 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs in TA repeats.
XX
SQ   Sequence 344 BP; 117 A; 28 C; 45 G; 154 T; 0 other;
     tgtaaagaaa atatatttct ttaatgttta tttttctaac taaaaactct ttagtacgtt        60
     gtatataggt ttcagtaaat tagatgacat tttttttaaa tttattattt tgtttgaatt       120
     gtcaatttta gattttagat ttgtaaaata tttagtacag aaaaatgtgg aataataaac       180
     tttaaatgtc gtttctttgt taacaggtaa gggattatat aattgtttag ttttttgtgt       240
     tttagttaag gttttgtata aatttaagtt aatataataa atctttgtta acagagcaac       300
     acatgtttat tccacctcaa taattcggca cattaaatct tata                        344
//
ID   Gypsy-8_MoPha-I repbase;    DNA;    INV; 4181 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-4181
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1160-1160 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..1061
FT                 /product="Gypsy-8_MoPha-I_1p"
FT                 /translation="MPVERSPVSSPGTSTEQPQEHLLLETKDQHDVNRTLF
FT                 SDQHSSAIRGDTQEIHSNEFRLLKLPSFWHKQPKLWFAQLESEFLIYRIRS
FT                 DDVKYNSVIRHLDEQALVAVAEIVENPPERDKYLYLKNVLINRFSDSEEKR
FT                 LRQLLAGIELNDKKPTELLRELKQLAGNAISENILHSIWLQRLPLRVQATL
FT                 AVVDEAPLIKLAELADKILERDSGLQIAAVTSTPESGSSSLADLERRISAL
FT                 EVKRYRSRSRSRFNYNKRFRSNSRNKYFKNDKSDKSDKSDKSDKVPTCFYH
FT                 KKFGDKAQKCTIPCAMSKAFTANPEN"
FT   CDS           1037..4156
FT                 /product="Gypsy-8_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SFYCKSGKLILPLSHEADCDGLPCSRLIVTDKTSLLN
FT                 FLVDTGADISLIPKRLAQFSQSSSSFKLFAANGSRINTYGVKTLVLNLGLR
FT                 RNFKWKFCVADIQRPILGADFLSHYGILIDIKNKKLLDSVTGLSFKGKLSN
FT                 VNHLSICTTSPDSPYHKILARFPELTHFAPLTSNKLHQVEHHIVTRGPPIS
FT                 VTPRRLSPEKLKFAREEFNLMIEQGICRPSSSCWSSPLHMVPKNDNSWRLC
FT                 GDYRALNAITVPDRYPLPHIQDLTMGLHGKNIFSKIDLVKAYYQVPVAAED
FT                 IPKTAVTTPFGLFEFLVMPFGLCNAAQTFQRLMNIILAGLDFCFCYLDDIL
FT                 IASNNVEEHFEHLEILFSRLKQFGMTINLSKSLFGQSEISFLGFLISNQGI
FT                 KPTTEKIKAIIDFKKPKTFLDLRRFLGVINFYRRCLKDAAKHQAILTDYLK
FT                 DSKKRDRRLIIWTPEAEEAFRFCKEELTKITTLTHPVPAVPLILSCDASDF
FT                 AIGAALEQIIDGISKPIAFFSKKLNDTQCNYSTYDRELLSIYSAIKHFRYL
FT                 LEGREFIIQTDHKPLIFAFHQKMDKASPRQIRQLDFIAQFSTDIRHISGRD
FT                 NIVADLFSRINAISLPVIVSLEDLANCQKEDEELKSLFNNSSLKLQKLILT
FT                 GSISPIFCDCSTENIRPYVPLRLRRRIFDIVHGLAHPSGRATLKQIQQKFV
FT                 WPSIKKDIKEWSRSCLSCQRSKISRHNKNLPVKISVPDQRFQHIHLDLIGP
FT                 LPVCQGFRYCLTMIDRFSRWPEAVPLSEVTADIVSTAFYSHWVARYGAPFT
FT                 VTTDQGPQFEAALFKALTNLIGCERVRTSAYHPASNGILERWHRTLKSAIM
FT                 CHAKNNWIEVLPSVLLGLRTCFKEDLQASPAEMLYGSTLRLPGEFFIDEDL
FT                 PADPEIFIEKHREHMRLIKSRPTAHHCKTTPFHHPALSDCSHVWLREDCLK
FT                 KSLQPPYSGPFRVVKRVNEYLFTIDIAGKIVNVSTERLKPAFLPKEIPLDH
FT                 LAVSFPATSSIPSVLPSRPLRTYCGPKKKVRFAT"
XX
SQ   Sequence 4181 BP; 1196 A; 776 C; 725 G; 1484 T; 0 other;
     actggtgacc ccgacgtgat agaaaagaca agcctgtcaa agaatcgtgt ttacgttttg        60
     gctctcctga cgattgtcgt gcacgaaatt tgaaatcttt cttcgagatg cctgttgaac       120
     gttctcctgt gtcttctcct gggacatcga ctgaacaacc tcaagaacat ctgcttctgg       180
     aaacgaagga tcaacatgat gttaaccgga ctctcttttc tgatcaacat tcatcagcta       240
     tacgaggtga cacccaagaa attcactcga atgaattccg tcttttgaaa ttgccatctt       300
     tttggcataa acaaccgaaa ctttggtttg ctcaattgga aagtgaattt ttaatatata       360
     gaattcgttc tgatgatgtt aaatataatt cggttatacg tcaccttgat gaacaagctt       420
     tagtagctgt tgctgagatc gttgaaaatc ctccagagcg agataaatat ctttatttaa       480
     aaaatgtact tataaatcga ttttctgatt ctgaggagaa aaggttacgt caattattag       540
     ctggaattga attaaatgat aaaaagccga cggaattgct tcgagaactt aaacaattag       600
     ctggaaatgc tatttctgag aatattctcc attcgatctg gcttcaaaga ttacctctta       660
     gagttcaagc tactttagct gttgttgatg aagctccttt aatcaagctt gctgaattag       720
     ctgataaaat tttggagaga gattcgggct tacaaattgc cgctgtaact tctacacctg       780
     aatctggttc ctctagttta gctgatttgg agcgtagaat ttccgcttta gaagttaaac       840
     gctatagaag cagatcgaga tctagattta attataacaa gagatttaga tcaaattctc       900
     ggaataagta tttcaagaat gataaatctg ataaatctga taaatctgat aaatctgata       960
     aagtgcctac ttgtttttat cataagaaat ttggtgataa agctcaaaaa tgtacaatac      1020
     cttgtgctat gtctaaagct tttactgcaa atccggaaaa ctgattttgc cgttgagtca      1080
     tgaggcagat tgtgacggtt taccttgtag tcgcctcatt gttactgata aaacttcatt      1140
     actcaatttt cttgtcgata ccggagctga catttcattg attcctaaaa gattagctca      1200
     gttttctcaa tcttcttcat cttttaaact gtttgctgct aatggatcca ggattaatac      1260
     ctatggagtt aaaaccttag ttttaaatct tggactgcgc agaaatttta aatggaaatt      1320
     ttgtgtcgcg gatattcaac gtcctatttt aggagctgac tttttgagtc attacgggat      1380
     tttaatcgac atcaagaata aaaaactttt agacagtgtt actggattgt catttaaagg      1440
     gaaactgtct aatgttaatc acttgtcgat ttgcactact tctcctgact caccttacca      1500
     taaaatcctt gcaagatttc ctgaattaac gcattttgca cctttgactt ccaacaagtt      1560
     acatcaagtt gaacatcata ttgttacaag aggacctcct atttctgtta ctccacgaag      1620
     actttctcct gagaagctta aatttgctcg tgaagaattt aaccttatga ttgagcaagg      1680
     tatttgtagg ccttctagta gctgttggtc ttctccactg cacatggtcc ctaaaaatga      1740
     taattcctgg agactttgtg gagattatcg tgctcttaat gctattactg ttcctgaccg      1800
     ttaccctctc ccacatattc aagatttaac aatgggatta catggtaaga atatattttc      1860
     taaaattgac ttggtcaagg cttattatca agttcctgtt gctgctgaag atatacctaa      1920
     gacggctgta accactcctt tcggtctttt tgaatttctt gtcatgcctt tcggactatg      1980
     taatgctgct cagacttttc aacgtcttat gaatattatt cttgctggct tagacttctg      2040
     tttttgctat ttagatgaca ttttaatagc ctctaataat gttgaagaac actttgaaca      2100
     tcttgaaatt cttttctctc gtcttaaaca gtttggtatg actattaatt tatcaaaaag      2160
     tctttttggc cagtctgaaa tttcctttct tggcttttta atttctaatc aaggaatcaa      2220
     gcctacaaca gagaaaatta aagctattat tgattttaaa aagcctaaaa catttctaga      2280
     cttacgaaga tttttaggag tcattaattt ctatcgccgg tgtttaaaag atgctgctaa      2340
     acatcaagct attttgacag attatttaaa ggacagtaag aagcgtgata gaagactaat      2400
     tatttggaca cctgaagcgg aggaagcttt tcgtttttgt aaagaagaac ttaccaagat      2460
     tactactttg actcatcctg ttcctgcagt tcctcttatt ctttcttgtg atgcttctga      2520
     ttttgctatt ggagcggcct tggaacaaat tattgatggg atttccaaac cgattgcctt      2580
     tttctctaaa aaattaaatg atactcaatg taattatagc acttatgata gagagcttct      2640
     tagtatttat tctgctatta aacatttcag atatcttctt gaaggacgtg aatttattat      2700
     tcaaacagat cataaacctt taatatttgc ctttcatcag aagatggata aagcttctcc      2760
     tcggcaaatt cgtcaactgg attttattgc acaattttcc actgacatca gacatatttc      2820
     tggaagagat aatattgttg ctgatttatt ttcaagaatt aatgctattt ctttgcctgt      2880
     cattgtttct cttgaagatc ttgctaactg tcaaaaggaa gatgaagaac ttaaatctct      2940
     ttttaacaat tcttctctta agctacaaaa attaattctt actggttcaa tttcacctat      3000
     attttgtgat tgttccactg agaatattcg tccttatgtt cctttacgtt tacgaagaag      3060
     aatttttgat attgttcatg gtttggctca tcctagtggt agagcgactt taaaacaaat      3120
     tcaacaaaaa tttgtttggc cttcaattaa aaaagacatt aaagaatggt caagatcttg      3180
     tctttcttgt cagcgttcca agatttcaag acataacaaa aatttacctg tcaagatttc      3240
     tgttccagat caacgttttc aacatataca tcttgattta attggacctc ttcctgtctg      3300
     tcaaggtttt cggtattgtc ttactatgat tgatcggttc tccagatggc ctgaagctgt      3360
     tcctttatct gaagtcactg ctgatattgt ttctacggcc ttttattcac actgggttgc      3420
     aagatacggt gctccattta cagtcactac ggaccaaggt cctcaatttg aagctgcttt      3480
     atttaaagct cttactaatc ttattggctg tgagcgtgtc agaacttctg cttatcatcc      3540
     tgcttctaat ggaattctgg aaagatggca tcgtaccttg aagagtgcta tcatgtgtca      3600
     tgctaagaat aattggattg aagttttacc ctccgtttta cttggacttc ggacttgttt      3660
     taaagaagat ttacaagctt ctcctgctga aatgctttat ggatctactc ttcgtttacc      3720
     tggagaattt ttcattgatg aagatttgcc tgcggatcct gaaattttta ttgaaaaaca      3780
     tagagaacat atgagattga ttaaatccag acctactgct catcattgta aaactactcc      3840
     ttttcatcat cctgctttgt ctgattgttc tcatgtttgg ctcagagaag attgtttaaa      3900
     gaaatcactt caaccacctt attctggccc ttttcgtgtt gttaaacgtg ttaatgaata      3960
     cctttttact attgatattg caggtaaaat tgttaacgtc tccacggaac gtctcaaacc      4020
     agccttttta cccaaggaaa ttcctctgga tcatcttgct gtttcttttc ctgccacttc      4080
     atccattcct tcagttttgc cttctcgacc tttaagaaca tactgtggtc ccaagaagaa      4140
     agttcgtttc gcaacgtaga acgtcgctgg ggagggagta c                          4181
//
ID   Gypsy-8_MoPha-LTR repbase;    DNA;    INV; 237 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-237
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1172-1172 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 237 BP; 80 A; 29 C; 28 G; 100 T; 0 other;
     tgtggcagcc cttgcgattt attccccatt tttagttatt ttctagtttc tttatttatt        60
     tgttatcaaa ctaatttcaa gcaatttatg tttcttagat actaaaaaaa ggaatgttgt       120
     ttattaaaaa aagaaattat ttattctttt gtaagcttga tattagtaaa cacgtataac       180
     tttacaaagt ctatttattt cataagtata agataaatta gggaaatcat tcccata          237
//
ID   Gypsy-8_MSe-I repbase;    DNA;    INV; 4434 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4434
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 886-886 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 4434 BP; 1192 A; 865 C; 999 G; 1378 T; 0 other;
     tcagaagtgg gattgtgcca cattctgacg ccattttcta agacgtgtat aaaattaaaa        60
     ttctttgttt ttaatcccta ctttcttgtt tgttcgccat gccgaagatt aaaattaaaa       120
     atggagctag gagtcgtgaa cgttcttccg tttcgagaat tgagcaacag cttgaatctg       180
     taatttctag attaaatgcg tttgaacaaa atgattccag gattcacaat gcagataaaa       240
     ctagtgtgtg tgtgctgagg tgacttcgcg tgcactacag ctacccgcgg gacaagccgc       300
     acgcccggtt acgccaccga tgccgtgcga gcctgacgga cctgaggctg gaggttcact       360
     accagcaccg tctagcaatg tatcccgcgc atgtagcgtg gatgcgtgcg tcgccttcca       420
     tcaccgaagg tgttatgaat gaggtgacaa ataagctagt aacagttaag gcgcttaacc       480
     cggtaagatc caaccaaata tttatgtcga attttgacct atccttacat gattttaatg       540
     tgtggtgtaa tgaggtagaa catctgcaaa atattaaccg atgggacgac cgtgaatgtt       600
     tagcacgtat aggctattgt ctaaagggtg atgctcgtgt ctggtttaat gagtggacaa       660
     ctaatgatcg ctcttggtcg aatttcaagc gagagttgca atcattatgc ccgtgtcgag       720
     tagatattgc aaatattctt ttcgatgttc tataaaccga ttcagatcag tatttcacat       780
     atgctgaata tgctagacgt tcgttactgt atttaagaat tgttcggggg ttaagtgagg       840
     aactaatttc tgcgattata gtgcgtggca taactgagcc tcaaatccgg tcagctgtta       900
     tgaataggaa tttgttacct agtgatatag ttaacttttt atcagtttta tatgaaacct       960
     tattcgaagg cacagatcaa agcacgttat aataataatc ctaacaataa aaactattcg      1020
     cacaaaagag attattcagg tgctaagtca aaatgtttta tttgtgggga gtttgaacat      1080
     aaacagacca cttgctctaa acgttttaaa caaaatgacg aatctgataa aaatcagttg      1140
     tcaactttga agcggtttta tacagatagc tcagtatcaa ggtctgaacc gtgtggtttt      1200
     tgcaaaaaga taggtcataa ggtaagcata ttgaatcacg cggaaaatct aatgtaaatt      1260
     tttatcgcga agctgtaaat gaatacaagt ttaatgatat tgcaactgca atgattcaag      1320
     gggttcctgt agatattctt atagacaatg gttctcaaat ctctttaata gcggaatcgg      1380
     taaccaaaca ttttcagtgt acccaaactc cttctttttg tacattgcgt ggtattggaa      1440
     gtgaacatat tgagtctagc ttttctacta cattaactgt tgaatttcct gagattacac      1500
     ttgaagtaga tttccacgtg gtgcccgatc aatatttcag tattcctgta atactgggta      1560
     ccgatgtact taatagagag ggtgtggtct atacccgaat gcgaggtgct caaagtttaa      1620
     cgcgatccaa gacagttttt gatgtacaat tgagtgtgca tcaattcaac attaatactc      1680
     ctgttattgg tattgagaga gagcatttac tttctgtaat taatgaattt tctaattttc      1740
     tcattactgg tacaaccatt actaccgtta ccactggatc aatgcatatt cgattgcaca      1800
     ataaaacacc catagtgtat agaccataca aaatgtccta tcatgagaaa atacgagtcc      1860
     aagagatagt taaagatttg ctcgacaaaa ggataattag agaatcgaaa tctgagttct      1920
     ctagtcccat tcttcttgtg aagaagaaag acggtagtga atgaatatgt gtggacttcc      1980
     gtgcattaaa tgcaaatact gttaaatatc gctatccgtt accacttatt gatgaccgta      2040
     tagatcgttt ggataaggcc gtctatttta cgagccttat taacacgact acaggctttc      2100
     atcaaattaa aatggatagc gattcaattc aatatacggg cttcgtaacg ccgggagggc      2160
     attacaagta tcttaaaatg ccgtatggac ttgccaacgc ccctgtcgta taccaacgta      2220
     tcataagtaa tactctacga gctaatgatt tcttatgttt acgcgaaagt tggacattgg      2280
     aattaaatta cttttcggat ttcatcgcgg tttttatatt ttagtgttct cccgtcgttt      2340
     caaagacttt tcagtcttca tggtcacggg aggcactgag gtgttgttca tctgcaaagt      2400
     caaagttaca attgcctaca ttttgcaatt atacaacttt ttaaatttta tctgttggtg      2460
     gtcccatcta ctcagaatga gttcacagtg tcttgaagtc tggcaactgg tcttttgggt      2520
     tccgatttaa ttgagtgtgg aactggatcc caggcttgtg caggcttcca accatcttcc      2580
     ctattgaact ctacgacctt ttattgaatc tggcaaggtg cttgtatata tcgatgatta      2640
     tagtcgaggt acactcgcgc gccatggtct acgtgactat cgcgcgcagg cacacctcat      2700
     tggtcgggaa gatgtcacgt gcgacgcctg gatacaccgt gtttcggata ctcgccgtta      2760
     cgaggtgtat cgtgcaggca atgtgctgcg acctatacgg acggggagtc tgccactagt      2820
     cactgctcta tgatgtattc gtaccaagca tgacggtcga ggaaggtttg catactctca      2880
     gagaagtatt aaggactttg actactgcag gtttttcaat aaatcttaag gagtgtactt      2940
     ttattacgaa ggagattgaa tatttgagtc gtacaatatg ttttggtcag gtaaagccga      3000
     gcgcgtataa aatcgaagct ctagttaaat cttgtatacc taagaacgtt aagaaggtga      3060
     gacaattttt aggtctcgct ggatacttca ggagatacat acctggatat tcattgcgaa      3120
     cgggatgtat tgctaatcta ttccgcaaag gtgtgcagta ccaatggatg tggaaactgc      3180
     ccatttaaca aatatttata tgttctaggt atcatcgaca gccccctttg cagggaatgt      3240
     ctgtcggatg acgaaacagc ctcccatgtt atcctggaat gcggaggtgt agctgcacag      3300
     cgggctgaaa tcctcgctac accggggtca cctccgagaa gcctgtggag gagtcatgaa      3360
     gatcctgcgc ttctggaagg agtggggctg gctagaccca gagccggcat tccgcgtaca      3420
     acggcccgac ctactatggg ctcagtgtag ttcgagtatc ccgagggctc tactcatagt      3480
     gtaatgcatc ctgagggctc tgcatttgtg gtacgctccg cacccaaggg gcggcggatg      3540
     tagtactgat aacgcaccct gagggctctg cgttcgttgg gtgtacatcc cgagggctct      3600
     gtacatccat atttactagt aacctgaggg ctctgctagt ttagttttga gataacctga      3660
     gggctctgtc tcttactttg cgtttcttga attgtatatc ctgagggctc tgtacattca      3720
     tactatctag taacctgagg gctctgctag tgtagttttg agataacctg agggctctgt      3780
     ctcttacttt gcgtttcttg aattgtatat cctgagggct ctgtacattc atactatcta      3840
     gtaacctgag ggctctgcta gtgtagtttt gagataacct gagggctctg tctcttactt      3900
     tgcgtttctt gaattgtata tcctgagggc tctgtacatt catactatct agtaacctga      3960
     gggctctgct agtgtagttt tgagataacc tgagggctct gtctcttact ttgcgtttct      4020
     tgaattgtat atcctgaggg ctctgtacat tcatactatc tagtaacctg agggctctgc      4080
     tagtgtagtt ttgagataac ctgagggctc tgtctcttac tttgcgtttc ttgaattgta      4140
     tatcctgagg gctctgtaca ttcatactat ctagtaacct gagggctctg ctagtttagt      4200
     tctgagatat cctgagggct ctgtctctta cttttttaac catttattga ctgacttttc      4260
     taatatataa aaatgtgttg taaaggtgat gaggatgaga tcgaagatca cagaacgagt      4320
     ggaagcaacg ttgaaagttc gttgcaagaa gttgggttca tgttgacaag ttgcagcggt      4380
     catccagccc aagccacaat acgggcgagg acgcaccttc ttcaggagag gccg            4434
//
ID   Gypsy-8_MSe-LTR repbase;    DNA;    INV; 321 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-321
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 877-877 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 321 BP; 88 A; 45 C; 54 G; 134 T; 0 other;
     agttagcaaa ttcttctaga aggccgggag ccgtagttta gctgcaacta taacgtagga        60
     ttatatcctc tttggtttaa aatggccagc tcgcgctgac cattgcgtcg tcgatatatt       120
     tgttttagct gtcattaatt ttattgttgg atcggacgga cgttcacaat cttttcgcta       180
     gctatttttg tgttcttgat tatttgttaa tttgattcaa attattatct tttgtaaatt       240
     agtacagttt ttgttataag taataattac tattttagtt tatgttaatt tttctaataa       300
     ataaatgtaa aaaccctaaa t                                                 321
//
ID   Gypsy-8_OrIn-I repbase;    DNA;    INV; 4709 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4709
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1549-1549 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..1486
FT                 /product="Gypsy-8_OrIn-I_1p"
FT                 /note="gag."
FT                 /translation="MDVSRLLKDEVEYELGVRGIKVDGPLDRLRDGLRRVL
FT                 KMERDGQMSPPPKGPADVAADMAACEGKVELLKSDFDKRRKGEKIDLRKIL
FT                 TKAGHLMGRLGRLDPDRAVDESDKKALASKKADLLEVVMGIMSQCSANTED
FT                 PVEQLATPIGRLALSEEEEEPEQFTTPKTRLVVERRRIPIRSWNLTFSGDG
FT                 QGLGVQGFLEAAEELRVARGYDVKELFDGALDLFSGRALVWCRAIKREVAT
FT                 WKELVQELRAEFEPSDYEERLWEEIRSRTQGEDEPVGIYVSVLKNYFHRLP
FT                 NQPAEGAILRTALRGLHPFYLERLALHEISSLRELVEKGRRLEECRYRAGL
FT                 HRAPPRAGALLEPDLAYLPTTRRAATTATVAEVRPSTNTNTSATAKETSSQ
FT                 KSRLVCWNCDQQGHPHRFCKEAKKKFCYRCGRKDVEPTNCGCRRGSGNGRR
FT                 AQGRSDRS"
FT   CDS           1417..4653
FT                 /product="Gypsy-8_OrIn-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TDKLRMPTRFGKRPEGSGSLGSVLKEKPLTSDRESAD
FT                 WKEWLRVVKAFCAMKSRRNGGDGRPFAKISIFGQEVIGLMDTGASRSVISK
FT                 NAWKIFESLGARMRGSGANLAQADGGSLRVLGEALLPVALEDKLKTISFLI
FT                 VPRLSSDVILGIDFWTAMDLIPACYEANCDTISSIENRDPVVIGRSKLTAG
FT                 QLELLEALIRRWKRPKTKELGKACGVEHVIETGNEKPIKQRYYPVSPSIQA
FT                 ILNKELDEMLAKGVVVPSRSPWSSPVVLVKKRDGSTRFCVDYRKLNGVTKR
FT                 DAYPLPFVSHILDRLRDGRFLSSIDLKSAYWQVPLEKSSQEKTAFTVPGRG
FT                 LFHFLRLPFGLHNAPATWQRLIDTILGDDLEPHVFVYLDDIVIVTSTFEEH
FT                 LKVLEEVLKRLTDANLTINWEKSCFCREELHYLGYIVNENGLQVDPEKVQS
FT                 ILDFPTPKSVKQLRRFLGLASWYRRFVPRFSIEVAPLTELLKKNKRFDWGV
FT                 EQETALQSIKSKLVSAPILSCPDFSKPFILQTDASNSGLGAILSQQSEEGE
FT                 RAIAYASRSLTAAERKFTTTEQECLAVLWAIEKFRPYLEGMDFEVVTDHMA
FT                 LKWLHNLKDPQGRLARWAVKLQQYRFTVSHRPGKQHQAADALSRQHEEEEI
FT                 AVIDCSPDSLEPWYTQMISKIRKKPEDYPTWRVEGSRLFKRVVDHRKILGE
FT                 ERPWKMVVPKAQRKDLLMQYHDSPLSGHLGAFKTLQRVKEAYYWPAMAADI
FT                 ARYVQRCQTCLATKPSQEGPQGLMGRQKLVKRPFQLLTIDLMGPLPPSSKQ
FT                 NRFLLVVCDYFTKHTSLFAMRTATAKKVTELVEEGVFLKYGVPQTVLSDNG
FT                 VQFRSREFGKMLEAYGVKLWTTAVYHPQANPTERTNRVVKTMLSSYVDGNH
FT                 RAWDKELAKIQFALSTAVHESTGYSPGYLLFGRELPRSGTDHPETPETSDS
FT                 SHLDAERTTRVQQLKEMPVLFQEVQDRLDRAYEKGSRSYNLRRREVKYAPG
FT                 DIVWCRNHTLSSATAHFASKLAPKFVKRRVRSRVGDLSYELERIEDGSCTG
FT                 VWHVQDLKKDAPEPDDEEDASL"
XX
SQ   Sequence 4709 BP; 1250 A; 1111 C; 1309 G; 1039 T; 0 other;
     ttttggcgcc caacgtgggg cattttcgtc gagagtgaca ttttttattt attttattgc        60
     gaagaggaaa acaaaaagag gaaaaaccct tctcatcttt tgttgtgagt ttctgtttta       120
     gttaacaatg gatgtctcga ggcttttaaa ggatgaagtg gaatatgagc tcggagtgag       180
     aggaattaag gtcgatgggc cgctcgatcg cctccgagat ggcctccggc gagttttgaa       240
     gatggagagg gacggccaga tgtccccacc gcccaaagga cctgcagacg tggctgctga       300
     catggctgca tgcgaaggaa aggtggaact tctcaagtca gactttgata aacgcagaaa       360
     gggtgagaaa atcgatttac gtaagatttt aacgaaggct ggccatctga tggggcgact       420
     tggtcgtctg gaccctgata gggctgtgga tgaatcggac aagaaggctt tagccagcaa       480
     aaaggcggac ttgttggagg ttgtaatggg gattatgtcg caatgctcgg ctaataccga       540
     ggaccctgtc gaacaacttg ccacgccaat agggagactt gccttatctg aagaggaaga       600
     agagccggag caattcacaa caccgaagac tcgtctggtt gtggagagga ggcggattcc       660
     aatccgaagc tggaacctga ccttctcggg agatggccag ggccttgggg tccaaggttt       720
     cctggaggcc gccgaagaac tgagagtcgc ccgaggttat gatgttaaag aactttttga       780
     cggggccttg gatctgtttt caggaagagc actggtttgg tgccgcgcca tcaagagaga       840
     ggtcgccact tggaaggagt tggtgcagga gctgcgtgcg gagttcgagc cgagcgatta       900
     tgaagagagg ctttgggagg agatccgaag taggacgcaa ggtgaagatg aacccgtcgg       960
     gatatatgta agtgtcctta aaaactattt ccaccggttg cctaaccagc cagccgaagg      1020
     cgccatccta aggacagctt taaggggact gcatcctttt tatctggaga gactggcatt      1080
     gcatgaaatt agctcattga gagaattagt ggagaaaggc cgtcgcctag aagagtgccg      1140
     ctaccgagca ggtctccaca gagcgccacc gcgggctgga gccctgctgg aacccgacct      1200
     tgcttacctg ccaactaccc gtagggcagc aacgacagcc actgttgcgg aagttaggcc      1260
     ttcaaccaac accaacacca gcgcaaccgc aaaagaaacc tccagccaga agtctaggct      1320
     agtctgctgg aactgcgacc aacagggcca cccccaccga ttctgtaagg aagcaaagaa      1380
     gaagttctgc taccgctgtg ggcgaaagga cgttgaaccg acaaattgcg gatgccgacg      1440
     aggttcggga aacggccgga gggctcaggg tcgctcggat cggtcctgaa agagaagccc      1500
     ttaacatccg atcgagaaag cgctgactgg aaggaatggc tccgagtcgt aaaagcattt      1560
     tgcgccatga agagtcgaag gaacggagga gatggccggc cttttgctaa gatatcgatt      1620
     tttggacaag aagtgattgg cctgatggac accggggcgt cgagatcggt cataagtaag      1680
     aatgcttgga agatctttga aagcctaggg gcccggatga gagggtctgg agcgaatctg      1740
     gctcaagcgg acggaggcag cctgcgtgtg ctaggggagg cgcttcttcc ggttgcttta      1800
     gaagataaat tgaagacgat tagctttcta attgtgccga gactatcttc agatgttatt      1860
     ctgggcatcg atttttggac agcgatggac ttaatcccag cctgttatga agccaactgc      1920
     gatacaattt cctcgattga aaatagagat ccagtcgtca taggtcgctc taagctgacg      1980
     gcaggccagc tagaacttct agaggccctc attcgccgat ggaaacgtcc gaagaccaaa      2040
     gagctaggaa aggcctgcgg agtagagcat gttatcgaga cagggaacga gaaaccaatc      2100
     aagcaacgtt actatccggt ctcaccaagt atacaagcca tcctgaacaa ggaactcgac      2160
     gaaatgcttg cgaaaggggt tgttgtacct tcaagaagtc catggtcgtc accggttgta      2220
     cttgttaaga agcgagatgg cagcacaagg ttctgcgtag actatcgtaa gctgaatgga      2280
     gtgaccaagc gagatgctta cccccttccc ttcgtatctc acattttaga tcgactgaga      2340
     gacggacgtt ttctaagctc gattgacctg aaatctgctt actggcaagt tccgctagag      2400
     aagtctagtc aagagaagac agctttcaca gtccctggac gtggactgtt ccattttctt      2460
     cgcttaccct tcgggctgca taatgcgccg gcgacttggc agcgactgat agacaccata      2520
     ctcggcgatg atttagagcc acatgtcttc gtttatcttg atgatattgt tattgtgacg      2580
     tcaacatttg aagaacacct taaggtgctt gaggaggtac ttaagcgact cacggatgcc      2640
     aacttaacca tcaactggga aaagtcttgt ttttgccgag aggaacttca ttacttgggc      2700
     tacatcgtaa acgagaatgg actacaggtg gaccccgaga aggttcaaag catccttgat      2760
     tttccgacgc ctaaatcagt taagcaactt cgaagattcc tgggcctagc ttcctggtac      2820
     cgccgctttg ttcctcgctt cagcatcgaa gtagctccat taaccgaact gctaaagaaa      2880
     aataagagat ttgactgggg agtcgaacag gagactgcac tgcagtcgat taagtcgaaa      2940
     ttggtatccg cccctatcct gagttgccct gacttttcta aaccttttat tttgcagact      3000
     gatgcctcta actccggttt aggagccatc ctgagccagc aatccgagga aggagaaaga      3060
     gccatagcct acgccagcag aagcctcact gcagccgaaa ggaagtttac aacgacagag      3120
     caggaatgtc tggcagtgct ttgggcgatc gaaaagtttc gaccctacct ggaaggtatg      3180
     gattttgaag tggtgaccga ccatatggcc ttgaagtggc tacataacct aaaagacccc      3240
     cagggacgtc tagcccgctg ggctgtgaaa ctgcagcagt accggttcac cgtatcccat      3300
     cgacccggga agcagcatca ggcggcagac gccctatcca gacagcatga agaagaagaa      3360
     atcgctgtga ttgactgctc gccggattcg ctggaacctt ggtacacaca gatgatttcg      3420
     aagatccgga agaagccaga agactaccct acctggagag tggagggctc acgccttttc      3480
     aaacgtgttg tggaccaccg caagatcctc ggagaagagc gaccctggaa gatggttgtg      3540
     ccgaaagcgc agcggaagga cctgttgatg caataccacg atagcccgct gtcaggacac      3600
     cttggagcct tcaagactct gcagagggtc aaagaggcct attactggcc tgccatggct      3660
     gctgacatcg cccggtacgt gcagagatgc cagacttgcc tcgccacgaa accatcgcag      3720
     gaaggacctc aagggctcat gggaaggcaa aagttagtca agcgaccctt ccaacttctg      3780
     accatcgact taatggggcc attaccaccg tcatcgaagc aaaaccgctt cctacttgtc      3840
     gtctgcgact actttacgaa acacacatcc ttgtttgcga tgcgcactgc gactgcgaag      3900
     aaagtaaccg aattggtcga agaaggcgtt ttcttgaaat atggagtacc tcagacggta      3960
     ctgagtgaca acggcgtaca gttccggtct agggaatttg gaaagatgct tgaagcctac      4020
     ggagtgaagt tgtggaccac cgccgtttac catcctcagg ctaacccaac tgaacggaca      4080
     aaccgagtcg tcaagacgat gctgtcgtct tatgtagatg gaaatcatcg cgcgtgggat      4140
     aaggagctgg ccaagataca gtttgcgcta tctacggctg tccatgagtc cacagggtac      4200
     tctccaggat acctattgtt cggcagagag ctaccccgtt caggaaccga tcatccagag      4260
     accccagaga catccgattc ctcgcaccta gacgccgaga ggacaaccag agtgcagcag      4320
     ttaaaggaga tgccggtgct gtttcaagaa gtgcaagacc gattagatcg agcatatgag      4380
     aaggggagcc gaagctacaa cctgcgtcgt cgagaagtga agtatgcgcc tggagacatc      4440
     gtctggtgcc gaaatcacac cctatcgagt gcaacagccc actttgctag caagttggcc      4500
     ccgaaattcg tcaagaggag agtccggtcc agagttggcg acctctccta cgagctggag      4560
     cgaattgaag acgggagctg cactggggtt tggcacgtgc aagacctgaa gaaggacgcg      4620
     cctgagccag acgacgaaga agacgcatcc ctgtagcaaa gaaccttttt ttttttaact      4680
     tttgtttttt ttttgggtaa gggtagagt                                        4709
//
ID   Gypsy-8_OrIn-LTR repbase;    DNA;    INV; 599 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-599
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1578-1578 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 599 BP; 168 A; 131 C; 142 G; 158 T; 0 other;
     tgttacgagg taacaatatg tttcaaatat aagcgggaaa atcgaaagaa gatcgatctt        60
     ttcaatcaat cagtcaatca agaaggccgg ggaaagaaaa aggttaagcg gagagacgcg       120
     acacgtgaga agagttcgac cggcgtctcc gttcttcttc gaccccgtcg atcacccggg       180
     actctgatat atttcctacg tattatacgg atccactgca gccaacgcgc ggaccgtcag       240
     tcggtccatc atccgagaag gagattgaat tacggcgacg gcagcggaga gtctccggcg       300
     aggaaagcgg gtgaagcccc aagtcttttg aagtaacacg cttagttttc tgaagtaaca       360
     cgccttattt tcattgtgct gaataaacgg ctaaagcaag taattctttt tttttaatat       420
     atctttattt ttcattcaac atccaaaaat cgtccggagg acgtgggttt tccccctcct       480
     ccctaaggaa aggagtgggt ggcgctcaac agaagagaat ttttattatt ttacttttta       540
     ttattgatat tacgagtcaa gaggaccccg ccgtctccga cttgaggctg ggcgtaaca        599
//
ID   Gypsy-8_OsLi-I repbase;    DNA;    INV; 6862 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_OsLi-I.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-6862
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2018-2018 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..2093
FT                 /product="Gypsy-8_OsLi-I_1p"
FT                 /translation="MPPFSTKLVRARRRKGRKNSLRGDSVIFVEESSIESP
FT                 SRGSSSSIGRFEPRLQESSLVPAQSTMQSWGEPGGVSVPSSSTANNTLMIP
FT                 PRPLPSNVLNSSSDANEHQTNTLNLESLQPSKDSTTRDAVTSSPKLSKTFT
FT                 GTQYDLVKSFIPHFDGKPSQVNHFIAQCRLADTLAKTEDKTLLLAIIRNRM
FT                 QHRVYRGIVGDDEPETVEELIALIKSTFAQSFNLNDTQNELKTVRRRESES
FT                 IEEYGFRVNDILDRGVQGAKEDLSSEEFGGIKKLLMTSAVAGFLGGLGNDV
FT                 VASILSNDDVKDLRAAIKLASKIETQVNSSRNSQNTSVPDTNSRVLIAETR
FT                 DRRCFTCGKVGHISVDCRIRRDRRFANTNRDTLRCQKCGKAGHASSVCYSK
FT                 NTHRAWVKGSQPAVSSTPVNRRNPLNSKGPPETGATRREPLISRAGSTASA
FT                 AKRN"
FT   CDS           1895..6553
FT                 /product="Gypsy-8_OsLi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SRSCEFGMLQQKYSPCLGKGFATSSFFDPRKSTKSFK
FT                 LKRASGNGRDTERTPDITRRLHRVCREKELISKKQSPAVFLAHEYFLNKPI
FT                 SFLVDTGSQLNLIKRKELKPDLPVNVDKIYYLTGIGSGTVQSWGEVVIPIH
FT                 GIPICFQMVEDNFPIKEAGLLGTSFLEKQRATIRFKENFPCLIEFGEENLQ
FT                 APTFTSFDLPPRKKVLISVPTKGKNMSGYVRRIDAGPGIFLGEVLASQQDG
FT                 LVKLFVINTTSDFVTLTIPRIELEEFELIPPASRSSRTGNPGLNKSADQAR
FT                 RFSELLKYLDLSHLQEGEKASILEIVNEFSYQFHLPTDKLKAANVPHHTIS
FT                 TTDEIPIHTKQYRYPPVHKNEIETQVDSLLKDKIIQPSVSPYNSPVWVVPK
FT                 KPGSSGKPRWRMVIDYRRLNEKTVADAYPLPNITEILDQLGGAKYFSTLDL
FT                 ASGFHQIPVDPASKIKTAFSTPHGHYEFNRMPFGLKNAPATFQRVMDLILS
FT                 GLQGVELLVYMDDIVIYAASIEEHGRKLKTLLARLQNAGLTLQPEKCRFLQ
FT                 KEIAYLGHVITDEGVKPDPGKIRAVKQFPVPKTRKNIKQFLGLVGYYRRFV
FT                 PNMAKIAKPLTRLLKKDVPFRWTADVQTSFETLRDIICAEPLLQFPNFSQS
FT                 FLVTTDASNYAIGAILSQGPVGKDLPVAYASRSLNDAEINYSTIEKELLAV
FT                 LFGVEHFRPYLYGRQFTLLTDHRPLVWLHNVKDPTSKIMRWRIRLNEYDYT
FT                 VVYKPGKVNANADALSRNPVDTCINSDPQPLIVWSSMDSNPGSRCLERVLA
FT                 CAGGTPVAGSEPAGMDEMQFVYNESLVASAFLARGKAAAKQNEVTNKEQRT
FT                 LNTEAVSSKSLFKSRKGSFHEGACVVPVQLVPAQGCDPRDCVILSSPRTVV
FT                 SGESENEVAAGGNAGPAVKSTPDVTCGCGSVKCFQPNRPFICPACHDSCYV
FT                 GQTNVHLRALPVQCPARMGTCLHGSRVDVVECLGRETRQRGQVGTGIPKEI
FT                 VTSLTVSIKKKIRIIDLNNVKSGENSKRTILINNLDNEMNRPTVDPSSLPV
FT                 IYHVEDNLFMRHDNLAHFIPLSCNDTSQTTVGLLSRIGFTTELMQQYQIEV
FT                 GDAMIFRHEKHSVFLLFYKNEPRDELDFRHVESSLKSLKSLLDTVGSKTFS
FT                 LLIDSDRFNAPDRNNIIDILKQIFGNSEYVITLCAGGVEVPLESTRSQIIQ
FT                 EHHDSVVGGHRGTYKLYQLIRERFYWPGMAKEIAKFVRSCPVCQKNKNYSA
FT                 KTKQPMLITDTPRQAFEKLQMDIVGPLPVTNKGNQYLLTLQDNLTKYSDAI
FT                 PLKTIDTVTVAHALAEQFISRFGCPRVIHTDQGRNFISQLMKNFCKIFKIQ
FT                 QITSTAFHPQSLGSLERAHRSFINYLKHYCTKTDWDDWIRFCIFSYNTSVH
FT                 EGTGFTPHELVFGVKANIPSEFSKGQAPRTFAQHFDELFTKITTTQTMAAR
FT                 NLEKAKQKSKDYYDQRLNPCKFNVGDMVYLLKEPRSSKFDCDWLGPYKISR
FT                 MFGDLTAELELKENKYKIVHTNKLKLACIRLDDSTED"
XX
SQ   Sequence 6862 BP; 2062 A; 1350 C; 1535 G; 1914 T; 1 other;
     tatttggtga cagcggtggg ataatttaaa agggaatagt tcaaagtggg gacaaacatt        60
     taaaaggtga cagtttaaaa ggtgataatt ctgtgaaaaa cagtttaaaa cagtgaaata       120
     actgaatagt taaataaagt gattgtgaca aacttatgta cacttaaatt actttatcaa       180
     ctcgcgggtg tgtattaaac ggtcaattaa acattctaca aactatttta ttgaactgtt       240
     atatatttaa taagtggaca aagtttagtg caacttctcc ctcttgggtt ttggcacggt       300
     ttccccaaga gcgaagggta aataccggag acaggtgatt tcggctgccg tgcaagccat       360
     ccaccgaaat cacgcgcacc tcgtccacgt catcgttgca tcattcctgg agcataagag       420
     aggataaaat aaaatcccgg gacctgatcg gactgttcac ggagctgagg cctacctgat       480
     gcagctgatt gcggacaaat tttactggag tacctgctgc tgaattkggg accattgagc       540
     tggagtacct gctgtcgaat ttggggacca tcgagcagga gacgggacag agccatacac       600
     ctgtgaaaga agcaacaagt taaacgagaa acgttaagtg acttcttgcg gattataaat       660
     ttgtcgtgca acaaaactgt aagtctagaa tattagcaaa tagactatag aatattagtt       720
     gtaaccgtta gtcctaattc gataagatgc cgccgttttc aacgaaacta gtaagggcca       780
     gaaggaggaa gggtcgcaaa aatagtctgc gtggtgatag cgtcatattt gtggaggaaa       840
     gttcaataga atctcctagt agaggatctt cttcctcaat tggaaggttt gaaccccgat       900
     tacaagagtc atctcttgta cctgcccagt ccacgatgca gagttggggt gagccgggcg       960
     gtgtatctgt tccttctagt agcacggcaa ataacacgct aatgattcca cctaggccat      1020
     taccttctaa tgttttgaat tcctcttcag atgcgaatga acatcagaca aataccttaa      1080
     atttagagtc attacaacct tccaaggaca gtacgactag ggacgcggtc acgtcatcgc      1140
     ctaaactttc aaaaaccttt acgggcaccc aatacgatct agtaaaaagt tttattcctc      1200
     attttgatgg aaagccgtcc caggtaaacc attttattgc ccaatgtagg cttgccgata      1260
     ccttagcaaa aaccgaggac aaaacacttt tgctcgctat aattcggaat cgaatgcaac      1320
     accgggttta caggggtata gtgggtgatg acgaaccgga aactgtggag gaattgatag      1380
     ccctgattaa atctacgttc gcccaaagtt ttaatctaaa tgatactcaa aatgagttga      1440
     agaccgtacg ccgtcgtgaa agcgaatcga tcgaggaata cgggttccga gtaaacgata      1500
     ttttagatcg tggggtacag ggggcgaaag aagatttgag ttcagaggaa tttgggggca      1560
     ttaaaaaatt acttatgacg agcgcggtgg caggattttt agggggactg ggaaatgatg      1620
     ttgtcgcgag tatactttct aacgatgacg ttaaagattt aagagcggca attaaattag      1680
     cgtcaaaaat tgaaactcag gtgaattcat cgcggaattc acagaacacc agcgttcctg      1740
     atacaaattc cagagtgctg atcgcggaaa cgcgcgaccg cagatgtttt acttgtggga      1800
     aggtcggaca tatttctgtc gattgtcgga tacgacggga ccgccgtttc gcaaatacaa      1860
     atcgcgacac gctcaggtgc cagaaatgcg gtaaagcagg tcatgcgagt tcggtatgtt      1920
     acagcaaaaa tactcaccgt gcctgggtaa agggttcgca accagcagtt tcttcgaccc      1980
     ccgtaaatcg acgaaatcct ttaaactcaa aagggcctcc ggaaacgggc gcgacacgga      2040
     gagaacccct gatatcacgc gccggctcca ccgcgtctgc cgcgaaaagg aactaattag      2100
     taaaaagcag tcaccggctg ttttcctagc acacgaatat tttctgaata aaccaattag      2160
     ttttcttgtg gatactggtt cacaattaaa ccttattaaa cggaaggaat taaaaccaga      2220
     tctaccggtc aacgtagata aaatttatta ccttaccggg attggctcgg gaacggtcca      2280
     gtcgtggggt gaagtcgtca tacctattca tggtatccct atttgttttc aaatggtcga      2340
     ggacaatttt cctattaaag aagccggact tttggggacg tcgtttctag aaaaacaacg      2400
     agctacaatt aggtttaaag aaaatttccc atgtctcata gaattcgggg aggagaacct      2460
     ccaagctcct acctttacat cttttgatct acctcctcga aaaaaggtgt tgatttccgt      2520
     cccgacaaag ggcaaaaata tgtcaggcta tgttagaagg attgacgctg gccctggtat      2580
     tttcttgggt gaagtattgg caagtcaaca ggatggcttg gttaaattgt ttgttattaa      2640
     cactacatct gattttgtta cccttacgat accacggatt gaattagagg aattcgaatt      2700
     gatacctcct gcatctcgtt cgtctcgaac agggaatccg ggtttaaata aatcggcaga      2760
     tcaggctcgg agatttagtg aattactaaa atatttggat ttaagtcatc ttcaggaggg      2820
     ggaaaaggcc agcattctgg aaatcgttaa cgaattttca tatcaatttc atcttcctac      2880
     ggacaaatta aaagcagcca atgttcctca tcacactatt agtacaacag atgaaatacc      2940
     tattcatact aaacagtata gatacccacc agtccataaa aacgaaatag aaacacaggt      3000
     agattccttg cttaaagaca aaattattca accttcggtg tccccttata attcacctgt      3060
     ttgggtagtt ccgaaaaagc ctgggtcttc tggtaaacca cgctggagga tggttatcga      3120
     ttatcgaaga ttaaatgaga aaactgtggc tgatgcatat cctcttccaa atatcactga      3180
     aattttggat caattaggag gagctaaata cttcagtaca ctagatttag cttctggttt      3240
     ccatcagata cctgtagacc ctgcatcgaa aattaaaacg gctttctcga cccctcatgg      3300
     tcactatgaa ttcaatagga tgccctttgg cctcaagaat gctcctgcca cttttcaaag      3360
     ggttatggac ttgatattat ccggattgca gggtgttgaa cttcttgtat atatggatga      3420
     tattgtaatt tatgcagcct ccatagaaga acatgggcgc aagttaaaga ctcttttagc      3480
     tcgtttacaa aacgctgggt tgacacttca gcctgaaaaa tgccggtttt tgcaaaagga      3540
     aatagcatac ttggggcatg tgattaccga tgagggtgta aaacctgacc ctggaaagat      3600
     tcgagccgta aaacaatttc ccgtacccaa aaccaggaag aatatcaaac aattcctagg      3660
     tctagtggga tattatagac gcttcgttcc aaatatggca aaaatcgcaa aaccgttgac      3720
     tagactttta aagaaggacg taccttttcg ttggactgcc gatgtgcaaa cctcctttga      3780
     aacattgaga gatattattt gcgctgaacc tttattgcag tttccgaatt tttctcagtc      3840
     ttttcttgtt accactgacg cttctaatta cgccataggc gccatactta gtcaggggcc      3900
     agtgggaaaa gatctcccag tcgcatatgc ttcaagatct ctcaatgatg cagagattaa      3960
     ctattcgaca attgagaaag aattgttagc agtcttgttt ggagtggaac attttcgacc      4020
     ttacctttat ggccgacagt ttacattgct cactgaccat agacccttgg tatggttaca      4080
     caatgtcaag gatccaacat ctaaaatcat gaggtggcgg attaggttga acgaatacga      4140
     ttatactgtg gtatataaac ctggaaaggt caacgccaat gccgacgcac tttcgcggaa      4200
     ccccgtagac acctgtataa attcagatcc tcaaccactt atcgtatggt ctagcatgga      4260
     ttccaatccc ggttcgcggt gtctggaaag ggtgcttgcc tgcgcaggtg ggacaccagt      4320
     tgcaggctcc gaaccggccg ggatggacga aatgcagttc gtctataatg aatcgctagt      4380
     ggcctctgca ttcctggcgc gcgggaaggc agcggctaaa caaaacgagg tcaccaacaa      4440
     ggagcaaaga actttgaata cggaagctgt gtcatcaaaa agtttattta aatctcggaa      4500
     gggatcattc catgagggtg cctgtgtggt cccggtgcag cttgtgccag cgcaggggtg      4560
     tgatccccgt gattgtgtga ttttgtcctc gcctcgaaca gtggtttcgg gtgagagtga      4620
     aaatgaggtc gcagctggtg gaaatgctgg acccgccgtg aaatccaccc cagacgttac      4680
     atgcgggtgc ggctcggtga aatgtttcca accaaacagg ccatttattt gcccagcgtg      4740
     ccatgattcg tgctatgtcg ggcagaccaa cgtgcatttg cgcgctctac ctgtacaatg      4800
     cccagcgcgc atgggtacat gcttgcatgg ttctagggtt gatgttgtgg aatgccttgg      4860
     cagagagacc aggcagcgtg gacaagttgg cactgggatt cccaaagaga ttgtgacctc      4920
     gttaacggtt tctataaaga aaaagataag gattatagat cttaataatg tcaagagcgg      4980
     tgaaaacagt aaaagaacaa tattgattaa taatttggat aatgaaatga atagacctac      5040
     ggtagatcct tcctctttac ctgttatata tcatgtggaa gataatcttt ttatgcgaca      5100
     cgacaatctt gcacatttta tacctttgag ttgcaatgat acttcccaga ctactgtggg      5160
     cttgctaagt cggattggat ttaccactga gctaatgcaa cagtatcaga tcgaagttgg      5220
     tgacgccatg atttttcgtc atgaaaaaca ttctgttttc ctcttatttt ataaaaatga      5280
     gcctcgagac gaattggatt ttagacacgt tgaatcatca ttaaagtcat taaagtctct      5340
     cctcgatact gtgggttcca aaacattcag tcttttaata gactcggata gattcaatgc      5400
     tccagatcgg aataatataa tagacatact taagcaaatt tttggaaatt cggaatacgt      5460
     aattaccttg tgtgctggcg gggttgaagt tccgttagag tcaacacgat ctcagattat      5520
     ccaagaacat catgattcgg tggtaggagg tcataggggt acttataaat tataccaact      5580
     cattcgtgaa cggttttatt ggccgggcat ggcaaaggag attgcgaagt tcgttcgttc      5640
     ttgtccagtc tgtcaaaaga ataaaaatta ttccgctaag actaaacaac cgatgttaat      5700
     cacagatact cctcgacaag cctttgagaa attacaaatg gatatagttg gaccgttacc      5760
     cgtaaccaat aaagggaatc agtatttact tactctgcaa gataatttga ccaagtattc      5820
     tgatgcaatt ccattaaaaa ccatagacac ggtaaccgtt gcacatgctc ttgccgaaca      5880
     gtttattagc cgttttgggt gtccacgggt tatccatacg gatcaaggaa ggaacttcat      5940
     tagtcagtta atgaagaatt tctgtaagat tttcaaaatt cagcaaatta catccacggc      6000
     tttccatcct cagtcgttgg gttctcttga gagggcacac cgtagcttca taaattatct      6060
     taagcactat tgcacaaaaa cagattggga cgattggata cgtttttgca ttttctctta      6120
     taatacctct gtacatgagg gcactgggtt cacccctcat gaattggttt ttggtgtaaa      6180
     ggccaacata ccctctgaat tttccaaagg gcaagcgcct cgaacttttg cacagcattt      6240
     tgatgagctt tttactaaaa ttaccaccac acagactatg gctgcacgaa atctggaaaa      6300
     agcaaaacag aaaagcaagg attactatga tcagagatta aatccatgta aatttaatgt      6360
     aggcgacatg gtgtatttac ttaaagagcc tagaagttct aaatttgatt gcgactggct      6420
     gggtccgtat aaaataagtc gaatgtttgg agacttaaca gcggaattag aattaaagga      6480
     aaataaatat aagatagtac ataccaacaa attaaaattg gcgtgtattc ggctggacga      6540
     ttctaccgaa gactgaatta aatatatgcg tatcgttgaa tgccttgtaa gcttgtgctt      6600
     atgttctatt aatattacgg tttatgaata atccagagac tattgacaat atatggagga      6660
     attattattt gttgtacgtt tacgtataca gattatgatg tgtgcgaagc tacgagttat      6720
     tgaatggact attgaagatt gtacgatgag tgacattgaa tgaactacta aatacagact      6780
     tactttcacg ttattaggaa gttatgttat gaatgaaaaa gctgtttttt tttgtaaaca      6840
     cctttttgta taagggggaa gg                                               6862
//
ID   Gypsy-8_OsLi-LTR repbase;    DNA;    INV; 943 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-943
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2028-2028 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 943 BP; 264 A; 213 C; 212 G; 253 T; 1 other;
     tgtaacgtga aacgttatca cgtgaatatg tttagagtgg tgtggcgaca ctgccatgag        60
     aatatttatc gatagtctat tgtatcgata tgtcttgaat gttcttcgag gacctttgta       120
     tcgctggtca taaattaaga gcgaaattcg aacatcgtct aagcataccc ttatataaat       180
     agacaaagag taaattgtaa acccctcgac gtgggtgata gagctgagag aaggccggaa       240
     gtccagagaa tggaatagtt tcacttggaa aattcctaaa aaactaattt atgatagacc       300
     atagctaatt cgttgttttc gaccaagtca cgaacggtcc ttaagggtta cgaagtcttt       360
     ttcgatatcc tgtcttttca tgcactctaa gagggtcgta aatttcctca agagttgctt       420
     tggcaagtac aaggtcttgt cgtttcctaa tttctctggg tcccacgctt tctcttagca       480
     catgtgcgct gcaacgttct agcgtcttgg cggagcgcct ccacttccac gcgcttgagg       540
     gtggaccaca gccaggagaa ggggcccaca cgagacaggg tggactcctc caccattgga       600
     cgagggatga tcctgaggga ggatctagga tccaccaagg aaggggcatc gaccgacaac       660
     gcgcgaagat ctcctccgcc aagcgcagaa ttgtcagaat gatttttgtt actcgttacg       720
     aacaagtcgt tctcactcag aagggtctaa gccttaacaa cgcaacttta aagttctgat       780
     tttaatttga aatacmaagt attaaagtac taaaaacaaa aattacagtt tcttattttt       840
     gtaaatccgc gccttgagag cggagcgcct ctgcgctcca cggactgtca cacctgcacc       900
     taaatccccg aaaatcccta ttttccgcga cggacacgca aca                         943
//
ID   Gypsy-8_PBa-I repbase;    DNA;    INV; 4919 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4919
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 685-685 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1010
FT                 /product="Gypsy-8_PBa-I_1p"
FT                 /translation="MPTTDWVHRLRKEELEIELTRRHAETEGTVEILRQRL
FT                 RELVKAENAASAAKSSDIPAAASVVKMTENDSGQAIAKTINQIRKWGCHFD
FT                 GKDPWAFLERVEELSLAYGYNGQHLILGLPELLRGEALSWYRNRRHKWSTW
FT                 EQFCDAFRTQYCPRRYRNQLLKDIAGRAQKPDEKFHKYASEVETMMRRAGG
FT                 FTTAAQAEQIYENMHPEYKMYIRRQDATDLETLQDLAADFEDILRQRKTTT
FT                 TTAKHDAPALTKPIAAAVYNRAEHCWRCKQRGHTRFNCQRPPRKFCSQCGR
FT                 DGVFTRECHPPAGKAAGAGTNANEPRPRK"
FT   CDS           914..4792
FT                 /product="Gypsy-8_PBa-I_2p"
FT                 /translation="MRTGRSFHSGMSPSGGKSRRGRDKRERTPAPQVTFTP
FT                 RPHLQIKICNQSVIALVDTGSEISFINRDTARRMQELRFVPDDTASQAKLA
FT                 DGSPVEIPGTVKLPVRIEGQIIEHRFHILPELESEMLIGVDLWGKSNIRLM
FT                 PPRFGKGKDLTPARVSAARQCGETESIKLHHFLENEMRKFTEVRGPTELLR
FT                 HHIRLKKGTLPIKQRYRPRNPAMQRVIDDEVDSMLREGVIEPSESAWSSPV
FT                 VIVRKRDGRPRFCIDFRRLNEVTERDAYPLPQITATLDKLRGAQFLSTLDL
FT                 RNGYWQVPLTLASRPLTAFTVPGRGLMQFKVMPFGLHAAPASFQRLLDHVI
FT                 GPELEPFAFAYLDDIIVASRTFSEHLEHLAEVFQRLRAARLRINPEKCRFC
FT                 VDELKYLGHVVGRQGIRTDPDKTKAILDWPSPTTVKQVRQFVGIASWYRRF
FT                 IQDFATVAAPLTALTKKNARWTWGELQRRAFETLKNRLTTAPVLACPDFSR
FT                 QFFLQTDASTTGVGAVLTQFFTEGERVIAYASRTLNAAEQNYSATELECLA
FT                 VVWGIKKMRGYLEGYQFTVITDHQSLKWLQGLESPTGRLGRWMFELQQYQF
FT                 NIRYRKGTLNRVADALSRQTTVAAIQPTRCSWYDRIWGKIRAKPHELPDYC
FT                 IQQKRLFHHVLHDLNFHETPPQEQWKQCVPSQERTEVMRRVHEEPTAGHLG
FT                 IAKTIARAAREFYWPGMFRDIARFVRNCKNCQAYKVEQNKPPGMMHATAIN
FT                 QPWQQITVDLVGPLPRSNRGYTWLLNMQDRFSKWVEMCPLRKATGEAIAQS
FT                 LAENIFYRHGCPDEILSDNGTQFHSAPVTRLLQALGVRQRFTPPYAPHCNP
FT                 TERTNRTIKTMISQYVGREHKRWDEHLNELRFAYNSAVHEATGYTPAFLIY
FT                 GREIQPPRTITTRRSTAPDKPSAVYRRLQDAYELVRINLARAFQKQAKYFN
FT                 LRRRAWRPKVGEWVWKRNHPLSNKSTAFNAKLAPKFIGPLEVRRTISPVIF
FT                 DLRDPRGKWHRHTHLQDLKPSHAERESPIEPNVDEPTPEDNEGTPDHDDAP
FT                 ARRGNQPRRGRIQAARPPTETSGPVSREIDNHHGRYPRRHRSSLRMRRSAR
FT                 IRSYQTGTRRAVESTSDAEKQQPENTDRTGRKRGRPRKSSRSYKACTQPSR
FT                 ASGTSGNKXDEPPPNQSTPTDSAPSRNTYPTIRRPAAQEDASVDDTATTAS
FT                 GAPAARKRGRPAKTNRQGPQASDRSGLQQQYPGANNRRHHRTCNSRRPGSR
FT                 SPLRTSRTTARGGRVSARPPIHGTVLRGTYRA"
XX
SQ   Sequence 4919 BP; 1375 A; 1424 C; 1259 G; 860 T; 1 other;
     tggcgcccga acagggaccg tgacagagaa ataaaatatc gaggaaaatg ccgacgactg        60
     actgggtgca ccgtcttaga aaagaagagc tagaaatcga acttacgcgc cgtcacgccg       120
     aaaccgaagg gacagtagaa attttgcgtc agcgattacg agagctagta aaagcggaaa       180
     acgcggccag cgcggcgaaa tcttccgaca taccagccgc cgcgtccgta gtcaaaatga       240
     ccgagaacga ctcagggcaa gccatcgcga aaaccattaa tcaaattaga aaatggggct       300
     gccacttcga tggcaaggac ccgtgggctt ttttagagcg ggtcgaggaa ttaagtctcg       360
     cgtacggata caacggtcag catcttatac tcggtttacc agaactactg agaggggaag       420
     cactctcgtg gtaccgaaat cggcgacaca agtggagtac gtgggaacaa ttttgcgatg       480
     cctttcgaac acaatattgt ccacgccgtt accgcaatca attattgaaa gatatcgccg       540
     gtcgcgcaca aaaacccgac gaaaaatttc ataagtacgc cagtgaagta gaaaccatga       600
     tgcgtcgcgc cggggggttt acaacggccg cacaggcgga gcaaatttac gaaaatatgc       660
     atcccgagta caaaatgtat atccgccggc aagacgctac cgatctcgag acactccaag       720
     acttagcggc ggattttgaa gatatcttac ggcaacgaaa aacaacgacg acaaccgcaa       780
     aacacgacgc ccctgcactc acgaaaccaa tcgccgccgc cgtatataac cgagccgaac       840
     actgctggcg gtgcaagcaa cgcggacata cgcgctttaa ttgtcagcgc ccgccgcgca       900
     aattctgctc acaatgcgga cgggacggag ttttcactcg ggaatgtcac cctccggcgg       960
     gaaaagccgc cggggccggg acaaacgcga acgaaccccg gccccgcaag taacgttcac      1020
     gccacgaccg cacctccaaa tcaagatctg caatcaatca gtaatcgcgt tggtagatac      1080
     cggatccgaa atttcgttca tcaatcggga tactgcacgc cgtatgcagg aactccgttt      1140
     cgtacccgac gacaccgcga gtcaggccaa actcgcggac ggctcacccg tagaaatacc      1200
     aggcaccgtc aagcttccag tacgaatcga aggacaaatc attgagcatc gcttccacat      1260
     cctaccagaa ttagaaagcg aaatgctcat cggggtagat ctgtggggaa aatcaaatat      1320
     aaggcttatg ccaccgcgat tcggtaaggg gaaagacctc acgccggccc gcgtctccgc      1380
     cgctagacaa tgcggcgaaa ccgaaagcat caagctccat cactttttgg aaaatgaaat      1440
     gcggaaattc acggaggttc ggggtccgac cgaacttctg cggcaccata tccgcctgaa      1500
     aaaaggcacg cttccaatca aacaaagata ccggccgcgt aacccggcga tgcagcgcgt      1560
     gatcgacgac gaagtagaca gcatgctgcg cgaaggagta attgaaccat ctgaaagcgc      1620
     atggagttcg ccggtagtaa tcgtccgaaa acgtgacggc agaccgcggt tctgcataga      1680
     tttccgacgc ttaaatgaag tcaccgagcg agacgcgtat ccgcttccac agatcacggc      1740
     cactctggat aaattacgcg gggcacaatt tttatcaacc ttagatttac ggaatggcta      1800
     ctggcaggta ccactgactc tcgcaagccg accgctgacg gcatttaccg taccgggccg      1860
     gggattaatg caatttaaag taatgccatt cggattgcat gcagcaccag cctcgttcca      1920
     gcgactactg gatcacgtga tcggcccaga actagaacct ttcgcattcg cttacctaga      1980
     tgatattatc gtggcgagtc gtacgttttc cgaacatctc gaacatctcg ccgaggtttt      2040
     ccaacgacta cgcgccgctc gtctgcgaat taatccggaa aaatgccgat tctgcgtaga      2100
     cgagttgaaa tatctcggcc acgtcgtggg ccgacagggc atccgaacgg accccgataa      2160
     gacaaaggcc atactagact ggccatcccc gacgaccgtc aagcaggtcc ggcagttcgt      2220
     gggaattgcc tcatggtatc gtcgatttat acaggatttc gcgacggttg ccgccccgct      2280
     cactgcgctg acaaagaaga acgctcgctg gacctgggga gaactccaga gacgagcctt      2340
     cgaaacgttg aaaaaccgtt taactaccgc accagtatta gcctgcccag atttttcccg      2400
     acaatttttc ctgcaaaccg atgccagcac gaccggagtg ggcgcagtac tcacgcaatt      2460
     ttttacggaa ggagagcgtg taattgccta cgccagtcgc acgttaaatg ccgcggagca      2520
     aaattatagc gccacggaat tggagtgtct cgcggtcgtg tgggggatta agaaaatgag      2580
     gggatatctc gaaggatatc aattcacggt gataacggac catcaatcgc taaagtggct      2640
     acaaggccta gaatcaccga caggaagact aggacgttgg atgttcgaat tgcagcaata      2700
     ccaattcaat atccgctacc gaaagggaac cctcaaccgc gtggcggacg ccctttcgcg      2760
     acaaacaacc gtcgccgcga tacaaccgac gcggtgctca tggtacgacc ggatatgggg      2820
     aaaaattaga gccaaacccc acgaactacc agactattgc attcagcaaa aacgactgtt      2880
     ccatcacgta ctccacgatt taaatttcca cgaaaccccg cctcaggaac aatggaaaca      2940
     atgcgtcccc tcccaggaac gcaccgaggt aatgaggcgc gtgcacgaag aacctaccgc      3000
     cggacatctc ggaatcgcga aaaccatcgc acgggccgcc cgagaattct actggcccgg      3060
     aatgtttcgc gacatcgcgc gcttcgtccg aaattgcaag aactgtcaag cctacaaagt      3120
     agaacagaat aaaccgccgg gaatgatgca cgccaccgcg ataaatcaac catggcagca      3180
     gattacagta gacttggtgg gaccactgcc acgttcgaat cgcggatata cgtggctatt      3240
     aaacatgcag gatcggtttt caaaatgggt ggaaatgtgc cccctgcgaa aagccaccgg      3300
     cgaagcgatc gcgcaaagcc tagccgaaaa tatcttttac cgacacgggt gtcccgacga      3360
     aatcctctcc gacaacggga cacagttcca ttccgcgccc gtcacacgtc ttttacaagc      3420
     tctcggcgtt agacagcggt tcacaccccc ctacgcacca cactgtaacc cgacggaacg      3480
     gacgaaccgt acgatcaaaa cgatgatctc gcaatatgtg ggacgcgagc ataaacgctg      3540
     ggacgaacat ttaaacgagc tgcgattcgc atataattcg gcagtccatg aagcgacggg      3600
     ttacacgccc gcatttctga tatacggccg cgaaatccag cctccccgca ccatcactac      3660
     ccgccgctcc accgcacccg acaagcccag cgccgtatac cgccgcttgc aagacgcata      3720
     cgagcttgta cgaataaatc tagcgcgagc gtttcaaaag caagcaaaat attttaattt      3780
     gcgccgccgt gcctggcgac cgaaagtagg agagtgggta tggaagcgga accatcccct      3840
     ctccaacaaa agtactgcat ttaatgcaaa attagcgccg aaatttatcg gtcccctgga      3900
     ggtgcgcaga actatttccc cggtaatttt cgatctccga gatcctcggg gaaagtggca      3960
     ccgccatacg cacctgcagg acttaaagcc atctcacgcg gaacgcgagt ccccgatcga      4020
     gccgaacgtt gacgaaccaa ccccggagga caacgaaggc acccccgatc acgatgacgc      4080
     gccggcacga cgggggaatc agcccaggag agggaggatc caggcggcga gaccaccgac      4140
     tgagacgtcg ggaccagtca gtcgagaaat cgataatcat catggacgat atcctagaag      4200
     acatcgatca tctcttagaa tgcgcagatc cgcccggata cgatcctacc agaccgggac      4260
     tcgacgagct gtggaatcga cttctgatgc cgaaaagcag cagcccgaga acaccgaccg      4320
     gacaggccga aagcggggaa ggccccgaaa aagcagtcgc tcctacaaag cgtgcaccca      4380
     acccagcagg gccagcggaa ccagcggcaa caaacmcgac gagcctccgc cgaaccagtc      4440
     aacccccacg gacagtgccc cgagtaggaa cacttatcca acgatccgac gtccagcagc      4500
     gcaagaagat gctagcgttg atgacaccgc caccaccgcc tccggtgcgc cggcggccag      4560
     gaaacgcggc cgccccgcaa aaactaaccg ccagggcccg caagccagcg accgttccgg      4620
     attgcaacaa caataccccg gtgccaacaa tcgacgccac catcggacgt gcaacagccg      4680
     acgaccaggg tctaggagtc cccttcggac cagccggacc accgcccgtg gaggtcgagt      4740
     tagcgccagg cctccgattc acggtaccgt acttcgcggc acatatcggg cgtaaatatc      4800
     gggcccgccg cggtgacgaa aaatatgtat tgcgattcga ccacgaaggt cgcctgcgca      4860
     cgtggcgcag agtatactag aatatgcccc aaaattcggg cacgtaaagg agggggtga       4919
//
ID   Gypsy-8_PBa-LTR repbase;    DNA;    INV; 1016 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1016
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 686-686 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1016 BP; 276 A; 330 C; 231 G; 179 T; 0 other;
     tataacgaca cccgactcac ccccctcaat tactaacaat tattaacaat gttaaaagtc        60
     cccgaccgat caaccgtcgg ggcgccgaca cggcgatcct tccgcgatcc caccgtcgcg       120
     aaaagcccgt cgaacagcgg acgcggcaaa ccggtgatca cgcggcttca cgtgcgcgcc       180
     gcgtgaaaca atagacacac ggtaaggcca ccaccgccgg ccccgctacc gaccgcgcca       240
     ccgaacatcc tcgcggaatt cccgagcgcg ttcggcgaat tatcgcgggg attccgacaa       300
     agacatcccc cggaactacc ccgacccgag tccggccgac ccgttcccga cgactcccga       360
     ccgatggccg gctcgggtat attaagcgag tccgggagat aaacgagacc tatctccggc       420
     gagacagtaa ccagtccgac actgctctcg atattccgaa tcctctccag aaaaagcgat       480
     ctagggtgct acctatcgtg ccaggagctt ctggccgatc gctcctctaa atccaccagc       540
     gcacaagtat tcacaggttg aggagcttct caacctgggc tccacaaaga aagcccttgt       600
     gcacatattc ctctgacgat cgagaagcag ggagcttcct gcattcgagc cgtcatagcc       660
     ttacacacag ctgatccgtc atagcactac acacagctga tccgtcaaaa caagacggcc       720
     gaaatccccg cgcaccgtcg cgcccgcgcc gcgcctatcg aggaacgcga cgaaattcgg       780
     agaaccgacc gcgagcaaac gattgtatat aatacgtaga aaccgcgcgt cttttcgccg       840
     taccaacggc gaaatacctg taaatactgt acatataaaa acagccagtc ggcattgtaa       900
     atataaacct agacatacca agagacacga tattttattt ctcgtaccga atcctgacca       960
     aaaaccgatc gacgctatcc tgcagaaccg atcgacgcgg agatagagac gtttta          1016
//
ID   Gypsy-8_PPo-LTR repbase;    DNA;    INV; 111 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-111
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2977-2977 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 111 BP; 26 A; 28 C; 25 G; 32 T; 0 other;
     tgttgtgtat tgtttccgaa ctggcggctg cgcccgccgt caatgtgaca gctggttgaa        60
     taaacagtct gtgctaagca agctatcgtt tcactactcc caatactaac a                111
//
ID   Gypsy-8_RP-I repbase;    DNA;    INV; 2149 BP.
XX
AC   ACPB02034718;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_RP_;
KW   Gypsy-8_RP-LTR; Gypsy-8_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2149
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02034718; Positions   14475   16623.
XX
CC   Positions [608-1087] - Integrase core
CC   'AAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           86..1927
FT                 /product="Gypsy-8_RP-I_1p"
FT                 /translation="MLNLRDPSARLTKWALKLMEYNYQVIHRPGAQHKNAD
FT                 ALSRSVGGVDSSPGEFPTESVLAQEQEKDEWCRNFALSRPNQVQKGPNGLL
FT                 YFTDGESDSEKWRVAVPKALRAHILFMLHDTPWSGHPGMERTFSRVRRWFY
FT                 WPNLRRDVENYCRNCVLCTERKTPSGLTAPLGEPFEATCPFEQVSLDIVGP
FT                 LPLTKQGNRFLLTFIDNFSRYAEAVPLREQSAEATARAFVREIVLRHGTPR
FT                 RLLTDQGTNFTSGVFKAMCRMLQIKKLQTTAYHPQCNGLVERFHRTLIDEI
FT                 SFFVRRDGKDWDQWLPFALMAYRSTPHTSTGYSPHFLLYGKELEIPFECPL
FT                 DLTVYSGGVEEYVRDWQKRMDMALQSAWATMKDAREKRAEYFNAGKSLREF
FT                 NVGQRVYLFEPATPVGHARKFRRPWTGPHTVVHRKSPWDYQISLRKGGFVV
FT                 VHANRLKAAAPDEDNPEGNGCNLEEPHNIGDPVGENDIEINRENMAVGGGS
FT                 GDEDEFRQITIAREQPSGADTDDIEARAALDEDTVCPDVSDWEVRDFRDQT
FT                 WAPDLNESDTLLIPRSPYGLRNAATIPPEVRINARPRRRGERSSGAESLHG
FT                 GELASLADEGDTNYSS"
XX
SQ   Sequence 2149 BP; 597 A; 471 C; 611 G; 470 T; 0 other;
     ttggtgtcag gtgtggggtc aattcagatg ctatttactg gggcgacagt tcaagttaat        60
     tactgatcat tctgcgattc agtggatgct aaatctgagg gatccgtcgg cacgtctcac       120
     gaagtgggca ctgaaattaa tggagtataa ttatcaggta atccaccggc ctggggcaca       180
     acataaaaac gccgatgctc tcagtcgctc cgtaggaggg gtggactcaa gtccgggaga       240
     gtttcccacg gaaagtgtat tggcccagga acaagagaaa gacgaatggt gtcgcaattt       300
     tgccctctcc agacctaacc aagtgcagaa ggggccgaat gggttgttgt atttcacaga       360
     tggggaaagc gacagcgaga aatggcgagt ggcagttccc aaagcattaa gagcccacat       420
     cctgtttatg ctccacgata caccatggtc cgggcacccg gggatggaaa gaaccttttc       480
     tagagtccgt agatggttct attggccaaa cttgcgtagg gatgtagaga attactgcag       540
     aaattgtgtg ctatgtacgg agcgaaagac ccccagcgga ttaacggcac ctttaggaga       600
     gcccttcgaa gcaacatgtc catttgagca agtgtcctta gacattgtgg gccctctccc       660
     tctaaccaaa cagggcaatc gctttctctt gacattcatc gataacttta gcagatacgc       720
     ggaggcagtg cccttaagag agcagagcgc tgaggcgacg gcacgagcct ttgtgcggga       780
     aattgtactc agacatggaa cacccagaag gcttctaacc gatcaaggaa cgaattttac       840
     gtcgggggta ttcaaagcca tgtgccgcat gctccaaata aagaagctgc aaactaccgc       900
     ttatcacccc caatgtaacg gattagtaga acggtttcat agaacactaa tcgacgaaat       960
     ctccttcttt gtgcgaaggg atggaaagga ttgggatcag tggttgcctt ttgctctgat      1020
     ggcctatagg tcgacgccgc atacatctac cgggtatagc ccacattttc tgttatatgg      1080
     gaaggaacta gaaattccgt ttgaatgccc cttggatttg accgtatact caggcggggt      1140
     agaagaatac gttcgggact ggcaaaagag aatggacatg gcattgcaga gtgcctgggc      1200
     aactatgaaa gacgcaaggg aaaagcgtgc cgagtatttt aatgcgggaa aatcgttaag      1260
     ggaattcaac gtgggacaac gtgtttattt gttcgagccg gccaccccag tcggacatgc      1320
     taggaagttt aggagaccat ggacgggccc acacacggta gtacatagaa aatctccgtg      1380
     ggactaccaa atttccttaa ggaagggggg attcgtcgtt gtccacgcta atcgcctcaa      1440
     agcggcagca cccgacgagg ataacccgga agggaatggg tgtaatttgg aggaacctca      1500
     taatattggt gatccggtgg gcgaaaatga tatcgaaata aacagggaga atatggcggt      1560
     cggcggggga tcaggggacg aggatgagtt ccgccaaata accatcgcga gggaacaacc      1620
     cagcggggcg gacactgatg acattgaagc tagggctgca ctggacgagg ataccgtgtg      1680
     tccggacgtc tcagattggg aggtccgcga ttttcgggat caaacgtggg caccagacct      1740
     gaatgaatct gatactcttt taattccgcg gtcaccatat gggttaagaa atgccgcaac      1800
     gataccgccg gaggtacgga tcaatgcaag gccgcgacgt cgcggagagc gatcatcggg      1860
     ggcggaaagc ttgcacggag gggaactggc cagccttgcc gatgagggtg ataccaacta      1920
     ttcctcttag tagagagcaa cccttccttt ttattccgtc tggctgaaat gtaaatttga      1980
     aataggtagg caagaaagaa atttagagga agacttgtac caacagtggg aggaatcaac      2040
     acgccccgta ggagacctga aacagaagag tatccccggc gtcatccgga gaagcaccgc      2100
     taagaagatt cgaggggaac atgtttcact tttctaaaag gggaagtga                  2149
//
ID   Gypsy-8_RP-LTR repbase;    DNA;    INV; 715 BP.
XX
AC   ACPB02034718;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_RP_;
KW   Gypsy-8_RP-I; Gypsy-8_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-715
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02034718; Positions   13760   14474.
XX
SQ   Sequence 715 BP; 187 A; 119 C; 180 G; 229 T; 0 other;
     tgtagtgaaa tacactacag tagcagcgag tggtgggggc ctctgtggag ggggaaggcc        60
     ccaacaagca gtggagctag ctagagagta ggagtgagtg agtcagcgct gtgtgagaga       120
     caggtgcgag tgtagaccgt ctcgcttagc taaattgatt tctaaagggc cctttactgg       180
     actatcgcca tccctattca ggtgaaagga agtaccgcag gtgagctagc tttgtgtggc       240
     ggtgttggtg ttcccttccc ctcccctaca cggggcatcg acggcctact tggtggaaga       300
     cggggcggct cagctacaac taacaataca agagtgtgac cggctaaaac tcatatttat       360
     gttaatagta attagtataa agaagattgt atataattgt attgagtgta agtgtgtgta       420
     tatgtaccgt gtgtatgtgg gagtacgcat gtgagtgagt gtgctcgtgc gtatgtgtgt       480
     atatagtata cttagcgtag aggaagttgt ttgatgttta ttttaaacag ttacttattt       540
     tggtgatatt ttcctttgag aatcataaga caaagatagt tactttctgt tattatttgt       600
     attatttcta ttacttgtat tatttctgtt atttgtaacg ataggaaata tatcttttat       660
     tttgtgaacc taactctgtg attaaccacc ccctttccca taacctaaca taaca            715
//
ID   Gypsy-8_SI-I repbase;    DNA;    INV; 4512 BP.
XX
AC   AEAQ01018735;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SI_;
KW   Gypsy-8_SI-LTR; Gypsy-8_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4512
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018735; Positions    6198    1687.
XX
CC   Positions [3395-3862] - Integrase core
CC   'TTGTC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1787..2926,2930..4357)
FT                 /product="Gypsy-8_SI-I_1p"
FT                 /translation="MLEKEGIITKIDCVDWGSPLVIIPKPDGSVRLCVDFK
FT                 IAVNPQLKGAHYPIPRVNDVLNNFRNANFFCKLDIFKAYLHVGVDDESKAI
FT                 QTISTHCGTYKMNRLSFGIKTAPSEFHRILDQILSGLEGTIAYFDDIVVFS
FT                 QTYEECKQRLITCLERLRAYNLHLNIKKCRFFEKEISYLGYVISGNQISKC
FT                 PEKTKAILKSPRPENVDDVRKFLGLFTYYSRFIPDVSSITFPIRELLQTKK
FT                 RFVWSSKCEAAFIKLKNEIASDRVLVPFDPSLPVTVSCDASPVGIAGALSH
FT                 IINGIERPVEYMARALTAAKRNYSQLDREAVTIVFSIQKFYRYLYGRSFTL
FT                 ITDNRPLTRIFQQDAKLPAITSTRLLRYATFLSNFDYVKHRKAEEHGNVDY
FT                 LSRAPWESSPVIQDEDEEINEQVINQISTSAITSETIAEETSKDKELSKLR
FT                 EELASGKIYDPIYSLHNNIVFRGRRVFIPASLRSEILKELHCIHPGISKMK
FT                 NLARRYCYWRNIDKEIKELVRSCPECAKIQNEPKKVSLHHWKDPKINFQRV
FT                 HIDYAGPFQGHQFFIVVDAKSKWPEVRIIERNPTSTSTIHFLENIFSSHGL
FT                 PEVMVSDNAAIFKSEEFRQYCKNNGIFQKFIAPGHPATNGLAERYVQILKR
FT                 KLKAMENKPGTMTTKIEKILYRFRATPLQEGKSPSELYLNRQIRTKLDLWH
FT                 PSHTSQNLVKNSNTRQLSVGDRVLSRAYGRTERWKTGSITQRLGRLNYIIL
FT                 LDDGYIIKRHINQLRPSGIPKANVEEKSVCFNPKIRYWYPVQDDEPEVQPP
FT                 HQQAQDPEEMPIPQTQNTQAANEQNMSRGNLKPILRRSERIRKSPIHLKDF
FT                 VQK"
XX
SQ   Sequence 4512 BP; 1664 A; 894 C; 813 G; 1141 T; 0 other;
     attggcgacg aggtaaacat cagaatagag aatcagatct tgtagaatca gatccttttc        60
     acgccaacgc cacataacct catcagcaac cgacggtcca gaaagaagca taccaccaag       120
     tcagtcggaa tcaaaaaaat aatggacacg caacaattcc aggagttcat gaaagtattg       180
     acatcatgct tcgaaagtta agcacgaacc caacaggcaa gtcaacaccc aataaatccg       240
     aacaataatc tagtatcaaa tttcgggagt ttcgattcag acaaggaaga cttctcacat       300
     tataaacaac ggctggaaaa ctatctagag ctaagaaacg tattcaatga caaagacatc       360
     tgtgccaaag tcttactgaa ctgcatctga tgaaaatact acgaactact aatgtcttta       420
     accgctccaa acttacctac agaaaagacg tacgagcaat taatagaact cttggaaacc       480
     tatttgtgcc caaaaccgaa tgtggtggta caacaacatc gttttctttc gtgcattcaa       540
     aagccggaag agaatatcgc atcatacatt gcggaactaa gaaaattcat tgtgtcctgc       600
     gaattcaaat gcaattgcgg acgcacagtg gcagacatct tcctacaagc acaatttatt       660
     cggggacttc gagatgcaac gattcgagag aaactattgc agacaacgga gctaaccttc       720
     aaaaaagcgg tggatacagc tctcgcactg gaagcatcaa aattagataa cgtcgaaata       780
     tcaggtactt cgaagaaagc aaccgaaact gtaaatcgca tttctaaaac taaattcaaa       840
     actaacaaac gttcaagccg tctagaaaag cgtgtttatc cacagaaaaa tcgttcaaat       900
     agtcaatcgc attcaaaaag taaaatcgat tactgtgcat aagggttaga aaatgtatgc       960
     atacgttgcg ggcgagataa tcataaagtt caagactgtc gtgtaaacta caatagcgta      1020
     aaatgtcact cctgtagtaa accgggacac gtcgaaaagg tttgcaattc gaaattattg      1080
     aaaacaaaga acagtaatgt acgtaaagtc gaagcagaaa tccaggaaag taataaaagc      1140
     ttatacgata ctaatagtat tagaaatttt cacggaatta atactgtaat tgatatttat      1200
     gaaaaatcag ctcataaagc aaacgagaca aaaaaaattc tatacaaata tattaattaa      1260
     tggtaagagt caaaagttcg acgtagactc gggagcggga tttaccctct tgccaaaaga      1320
     ttaccttgag gagctcaaaa tatcaactcc gatacagcca acagatatcc ggtttcgctc      1380
     atacaccgga aaaatttttc aaccaatagg tgttatggaa gtttcaagaa tataaaaagt      1440
     caaagaatat aaaaagtcaa aaacaaaaga actcatgttt attgtaacaa aaggaacccc      1500
     actacttggt agaacgtgga tacgacatct caaaattaat ttactcgaac ttgacacaaa      1560
     tagtcattct gaaagttcaa actcggattt tattcatttt cttagcacgc agagcgatga      1620
     cacaaataat attttaaatc aattcaaaga tatttttgaa caaaaaatag gatgcattcc      1680
     aaattttaca tgttccttga aattatgaga taatgccaaa ccagtattct taaaagcccg      1740
     cgatatccca tttgcacttc gaaataaagt cgaaaacgaa cttaatatgt tagaaaagga      1800
     aggaattatc acaaaaatag actgtgtcga ctgggggtct ccattagtaa ttatacctaa      1860
     accagatggt tccgtccgac tatgtgtcga ctttaaaatt gcagtaaatc cacagttaaa      1920
     aggagcccat tatccaattc ctagggttaa tgacgttttg aataattttc gtaatgcaaa      1980
     ttttttctgt aaattggata tatttaaggc atacctgcac gtaggcgtcg atgacgaaag      2040
     caaagccatt caaaccattt caactcattg cggcacgtac aaaatgaacc gattatcctt      2100
     cggaatcaaa acagcgccaa gcgaattcca taggatctta gaccaaatat taagtgggct      2160
     tgaaggaacc atcgcatatt tcgacgacat tgttgtattc agccaaacgt acgaagaatg      2220
     taaacagcgt cttattactt gtctagaaag actcagagca tataacttac atttaaacat      2280
     aaaaaagtgt cgattttttg aaaaagaaat ttcctattta gggtatgtca tatcaggaaa      2340
     tcaaatttca aaatgcccag aaaaaactaa agctattcta aagtcaccta ggccggaaaa      2400
     tgtcgacgac gtaagaaaat ttcttggatt attcacgtat tattctaggt ttattccaga      2460
     tgtttcgtca attacatttc ctatccggga attattgcaa accaagaaga gatttgtctg      2520
     gtcctcgaaa tgtgaagcag catttattaa gcttaaaaac gaaattgcca gcgatcgcgt      2580
     cttagtgcct tttgatccgt ccctgccagt cacggtatca tgcgatgcaa gtccagtagg      2640
     aatcgcagga gcactgtccc atatcatcaa cggcattgaa aggcctgtag aatacatggc      2700
     tcgtgctctc acggcggcca aacggaatta tagccagctc gacagggaag ctgttactat      2760
     cgtattttca attcagaaat tttatagata cttatatggc cgatcgttta cgctaataac      2820
     agacaaccgt ccgctaacaa gaatttttca acaagacgca aagctacctg ctatcacatc      2880
     gacacgatta ctacgttatg caacgtttct aagcaatttt gactactagg taaaacatcg      2940
     gaaagcagag gaacacggta acgtcgacta cctgtcacga gctccgtggg aatccagtcc      3000
     ggtgatccag gatgaagatg aagaaataaa cgaacaagta atcaaccaaa tttcaactag      3060
     tgcaatcaca agtgaaacta tagcagaaga aacgagcaaa gataaagaac tttcaaagct      3120
     aagagaagaa cttgcctccg ggaaaatcta tgatccaatc tacagcctac ataataacat      3180
     tgtcttcaga ggtcgacgtg tttttatacc cgcatccttg cgctcagaaa tcttgaaaga      3240
     actacactgc attcatcctg gtatatcaaa aatgaaaaac ttggccagac gatactgtta      3300
     ttggcgcaat atcgacaaag aaattaaaga gctagtgcgc tcatgtccag aatgcgcaaa      3360
     aatacaaaac gagccaaaga aagttagcct tcatcattgg aaagatccta aaataaattt      3420
     tcaacgcgtt cacatagact acgctggacc atttcaagga catcaatttt tcattgttgt      3480
     agacgcaaaa tcgaagtggc cagaggtcag aatcatagaa aggaatccaa catctacttc      3540
     aactatccat tttctggaaa acatctttag ttcacatgga ttgcctgagg tgatggtatc      3600
     tgacaatgct gcaattttta aaagcgaaga atttaggcag tactgtaaaa ataatggcat      3660
     ttttcaaaaa tttattgctc ctggacatcc tgctacaaat ggattagcag aaagatacgt      3720
     acaaattctt aaaagaaaat taaaagccat ggaaaacaaa ccaggaacaa tgactacgaa      3780
     aatagaaaaa attctatatc gttttcgggc cacaccatta caagaaggga aaagcccatc      3840
     agaactctat ttaaacaggc aaattagaac aaagttagac ttatggcacc cctcacatac      3900
     aagccagaac ttggtcaaaa attcaaatac aagacaatta agcgtgggag acagagtgct      3960
     atcacgagca tacggaagaa ccgaacgttg gaaaactggc tcaataacac agaggctagg      4020
     acgactgaac tatataatac ttttagatga tggctacatt ataaagcgac acatcaacca      4080
     gttacggccg tccgggattc ctaaagccaa cgtagaagag aaatcagtct gttttaatcc      4140
     gaaaatcagg tactggtatc cagtacaaga tgacgaaccg gaagtacaac cgccgcatca      4200
     acaagcacag gatcctgaag agatgccgat tccacaaaca cagaacaccc aagcggcaaa      4260
     tgaacagaat atgtctcgag gaaacctgaa accaattctt cgtagatctg aaagaatcag      4320
     aaaatctccg atacatttaa aagattttgt tcagaaataa gattgttcca tactccatat      4380
     tttagttata aatacgcgat aagacttttt tcttattttt actataccaa attagattac      4440
     tgtattactg tattatcagt ctatcacatt ataattatct tcataattca cagcataata      4500
     agcgtgggag at                                                          4512
//
ID   Gypsy-8_SI-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   AEAQ01018735;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SI_;
KW   Gypsy-8_SI-I; Gypsy-8_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-224
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01018735; Positions    1686    1463.
XX
SQ   Sequence 224 BP; 54 A; 41 C; 55 G; 74 T; 0 other;
     tgttatatcc ttgcgtgcga ttggtcgcgt gtctagtttc cggtacgcgg cgtaagctgt        60
     aaaagggtgg tagccctgct tttcgagaga gcgctcgctc tcttgggttt tgtgtgcgat       120
     tgggacatgg cgtgttttct gtaccacgat tacaaaaata tacaatttaa taagaacgag       180
     aataaggtac ctctcatttt tactttcata gtaagattat aaca                        224
//
ID   Gypsy-8_SiCu-I repbase;    DNA;    INV; 5007 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5007
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4971-4971 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..4939
FT                 /product="Gypsy-8_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MFRNILPASVLELQIWLIALLPVLTLIVTHYLYIMGR
FT                 RLLRQLHRNLWEPTTTTTFSTPLIPQDSASSAFNKSNSRATSKDIEKIKTD
FT                 LETLTSTFNARLAEVEKEARKFTQYASSRQDVRYSDLSSILDVAKDDIHEL
FT                 QQTFSQYRSQVNNDVLKIHEDLKTIEEFSNGVEDIFAGQYIPRPFTDKLTQ
FT                 AIIPRLPNRCQHQPIAHMSTVPKASPTNSGMSFTYNQQPQQQLSPVSSPAF
FT                 YSPPSNMPPPRFDSSLNTAESFLEELEHYLNQRRVPVEERICHLQMVFGNN
FT                 KDLNLWWQRAKLQVKSWNDFQDHFRRMYATDSDHNSAKEKLLLRRQQKNEK
FT                 FANFAMEMELHYLKLHRDHDINNTKIVLDFISERALPNLRPHLLACQAKDI
FT                 YQLIQFAQKIETTTPSTTQPTSRYMSQGFNKKSSFFSSGSVPKVSTGPISD
FT                 KTQKDLKLGQPNCSICGSTNHVXAQCRRGGSGHKINNATTAVSTINPTIQE
FT                 PPSSESEEDQPKDEKLNQCTGSIFINTQYVHNHDLPIIPVNFNIRDKKQNT
FT                 VVKVQGDCLVDCGATISVLGDSTLWQRKTLKTWKKGPIKLVDGSTVVPLGQ
FT                 VNFKFRIGSKTFTHKFICMNNCQFVMLLGTDFLRNSGMQLDFASFQFWFKD
FT                 TGPHTQYKFHVTAANNHNIRALQLLSEWENIKMDEVLKMYSSSVLNAPRIG
FT                 QTDLIEHEIHVTEDKPKLIKPYPVSEAKHKVIDKIVADMLEKGLISEGKSP
FT                 YSSPVVLRPKPNGDWRLVNDYRYVNQLTVPDRFPMKRIADLLRLLSGSKYL
FT                 STMDCEKGFWQVPLRECDKXFTAFQTRRGSYIYNVMPQGLKNSPATYQRMM
FT                 NKVLEGMDDYTFVFQDDILIFSKSFEEHLLHVQAVLDRLKTAKLTVSKSKC
FT                 QFGRDKVKXLGHIISSKGIERNPEKVEAIKKIPIPKSRRDLRGFLGAVGWF
FT                 RHFIDQMAEIAQPLYDLLNMKRKFAWSTAANDAFEKLKTVLAEDVILHHPD
FT                 FSKPFILRTDAASRGLGAMLVQLDEAGHERPICFASKSFNKAQLNYSTVEK
FT                 EAFAIIYAINRFADYLDGASFSIQTDNQALTYLNSMKNTNSKLMRWAMTLQ
FT                 EWSPSITHIKGRDNVVCDFLSRSVESDCDESELSYKINTAITLSCDIDKQT
FT                 LLKEQLKDSNCKLVLFQNPDQYAEINKIIYRKLRNGKLVPLIPLSLRERVL
FT                 RLLHDAPSSGHLGTDKTLHKLRNRAYFPGMRKFVPEYVKTCDVCQRNKYNN
FT                 TKPKGLMGSKPITRPWHTVYLDLLGPYTASSPHRYCYVLVAVDAFSKFVEI
FT                 HPLREATASAIGNILENELFCRYSTPQIIVTDNATSFRNNLIDSLCKKWGI
FT                 THAYSSPYHPQTNLSERVNRVIKTMIRSYLDGKPHTRWPDNLRAFQLAINS
FT                 SHHDSTGFAPTQILFNISPXLPIDNHLADPSDNHAEGDEISNTNDFYSCRF
FT                 AEFQDILRTVKLNLQQAHQQQKTSYDKNHSDDKLLVGDQVSIKNTILSNKD
FT                 RKITAGLXPLYKDVGTISKVINDLTYEVTLSDGSTKGPLHIQMLRRYHPRP
FT                 HPSPSPSIESSPSSQPSSPPSQNPIPSPLQSRYSLRPRAAVDYRA"
XX
SQ   Sequence 5007 BP; 1558 A; 1200 C; 918 G; 1326 T; 5 other;
     aatggtgccg aaactcgtta aataagtcaa aaatactcct tttttccacg acaataatca        60
     acaccgtgca agttcgaact caagataagt caaagctctc atcatgtttc gaaatatcct       120
     gccggcctcc gtcttggaac tacaaatatg gttaattgcg ctccttcctg ttttgactct       180
     aatagtgacg cattatttat atattatggg aagacgtctc ctccgtcaac tgcacaggaa       240
     cctatgggag cccacaacaa ccactacctt ttctactcca cttatccctc aagatagtgc       300
     atcttccgct tttaataaaa gtaacagtcg agcaacttcc aaagatatcg agaagattaa       360
     aacagatttg gaaaccttga cctctacctt caatgcacgt ctagcggaag ttgaaaaaga       420
     agctcgcaaa ttcacccagt atgctagttc acgtcaagat gtacgctaca gtgacctctc       480
     atcgattttg gatgtcgcaa aagacgatat tcacgagctt caacaaactt tttcacaata       540
     ccgttcacaa gtcaacaacg acgttttaaa aatccacgag gatttgaaaa ccattgaaga       600
     gttttcaaat ggtgttgaag acatttttgc ggggcaatat atcccccgtc cgttcacgga       660
     taaactgaca caagcaatta tcccacgcct accaaatcgc tgtcaacatc aaccaatagc       720
     ccatatgtca accgtgccaa aggcgtcacc cactaatagt ggcatgtcat tcacttacaa       780
     ccaacaacct caacaacaat tatcgcccgt atctagccca gcattttact caccaccgtc       840
     caacatgcct ccaccaagat tcgactcctc tctcaacacg gcagaatcct ttttggagga       900
     attggagcat tacttgaatc aacgacgcgt tccagttgaa gaacgaatct gccatttaca       960
     gatggtgttc gggaacaaca aagacctcaa tttgtggtgg cagcgtgcaa aattacaagt      1020
     aaaatcatgg aatgactttc aagatcactt tcgccgcatg tacgccactg actcagacca      1080
     caattctgcc aaagaaaagc tcctccttag acgacagcag aagaacgaga aatttgccaa      1140
     cttcgccatg gaaatggaac tacattatct caaactccat cgagatcatg acatcaacaa      1200
     taccaaaatt gtgctggact tcatctctga gcgagcctta cctaatttac gaccacattt      1260
     gctagcttgc caagccaagg acatttatca gttaatacaa tttgcccaga aaattgaaac      1320
     gactacacca tccactacac agccaacttc tcgatacatg tcccaaggct tcaataagaa      1380
     atccagcttt ttctcatccg gtagtgttcc caaagtctca acaggaccaa tttctgataa      1440
     aacacaaaaa gacttaaagc tgggacaacc aaattgctcc atctgcggta gcactaatca      1500
     tgtggmcgct cagtgtcgcc gtggaggttc aggacataaa attaacaacg ccaccacagc      1560
     agtctcaaca atcaacccca ctattcaaga gccaccatcg tcggaaagtg aggaggacca      1620
     gccaaaggat gagaaactaa atcaatgtac gggttcgata ttcattaata ctcaatatgt      1680
     acacaatcat gatcttccca ttatccctgt aaattttaat atccgtgata agaagcaaaa      1740
     tacagtggtg aaagttcaag gtgattgttt agttgattgt ggagcgacta tttccgtact      1800
     gggcgactcc acactttggc aacggaaaac tcttaaaaca tggaagaagg gacctatcaa      1860
     actagttgac ggttccaccg tcgtgccatt aggacaagtg aattttaaat tccgtattgg      1920
     ctcaaaaaca ttcacccaca aattcatttg tatgaataat tgtcaatttg tgatgttact      1980
     aggtactgac tttctccgga acagtggtat gcagttagat tttgcatcat ttcaattttg      2040
     gttcaaagat actggaccgc acactcagta caaatttcac gttaccgctg ctaataatca      2100
     caacattagg gcgctacagc tactttccga atgggaaaat attaaaatgg acgaagtcct      2160
     caagatgtat tcgtcgtctg tgctcaatgc cccaagaatt ggacaaactg atctcattga      2220
     acatgaaatt catgtcactg aagacaaacc aaaactcatc aagccttacc cagtctcgga      2280
     ggcaaagcat aaagtcatcg ataagattgt agcagatatg ctggaaaagg gactcatctc      2340
     tgaaggaaaa agcccatatt catctcctgt ggtccttcgg ccgaaaccga acggcgattg      2400
     gcgattggta aatgattacc ggtacgtcaa tcaactaaca gtccctgata ggttcccaat      2460
     gaagcgaatt gctgatctcc tcaggctttt atccggctca aaatatctga gcaccatgga      2520
     ttgcgaaaag gggttttggc aagttccact tcgtgagtgt gacaaacmgt tcaccgcttt      2580
     ccagacacga cgggggtctt atatctataa cgttatgcca caaggtctta aaaatagtcc      2640
     tgctacttac cagcgtatga tgaacaaagt attagaggga atggacgatt acacatttgt      2700
     cttccaagat gatatcttaa ttttttcaaa atcctttgag gagcatcttt tacatgtgca      2760
     agctgttctc gacagactta aaactgccaa acttactgtc tcaaaatcca agtgccagtt      2820
     tggtcgtgat aaagtgaaat wtttaggaca tatcatttct tcgaaaggaa tagaaagaaa      2880
     tcctgaaaaa gttgaggcaa taaagaaaat cccgattcct aaatcacgac gcgacttgcg      2940
     aggattcctt ggcgcagttg gatggtttcg ccattttatt gaccaaatgg cagaaattgc      3000
     acagcccttg tacgacttgt taaacatgaa acgcaaattc gcgtggtcta cagcagcaaa      3060
     tgacgcattt gaaaagctaa aaacggtgct agcagaagat gttattcttc atcaccccga      3120
     ttttagtaag ccatttatat taaggacgga tgccgcgtct cggggtctcg gtgccatgct      3180
     agtccagttg gatgaagcag gacacgaacg acctatttgt ttcgccagta aatcttttaa      3240
     caaagcccag ctcaactact ccactgtcga gaaggaagct tttgcgataa tttacgccat      3300
     caatcgtttt gctgactact tagacggggc ctctttctcc attcagacag acaatcaggc      3360
     gttaacctat ttgaatagca tgaagaacac taattccaag ctaatgagat gggcgatgac      3420
     tctgcaagaa tggagcccct ccatcactca cattaaggga cgtgacaatg ttgtctgcga      3480
     cttccttagt cgatctgtgg aaagtgattg tgatgaaagt gagttatcct ataaaatcaa      3540
     cactgctatc accttgtcgt gtgacattga caagcagacc ttgttaaagg aacaacttaa      3600
     agattcaaat tgcaagctag ttttatttca gaaccctgac caatatgctg aaataaacaa      3660
     aatcatatac cgcaagttac gtaacggaaa gcttgttcct ctgatccctt tatctctgag      3720
     agagcgagtg cttcgacttt tacatgacgc tcccagctca ggtcacctag ggacagataa      3780
     gacgcttcac aaactcagaa accgtgcata tttccctggc atgcggaagt tcgtacctga      3840
     atatgtcaaa acgtgcgacg tgtgtcaacg caacaaatac aacaatacta aaccaaaggg      3900
     actaatggga agcaagccaa ttacccgtcc atggcacact gtctatttag acctacttgg      3960
     cccatataca gcatcatcac cccatcgcta ctgttacgtt ctagttgctg ttgatgcttt      4020
     cagcaagttt gttgaaatcc atccattgcg tgaagccaca gcctcagcga ttggaaacat      4080
     attagaaaac gagctattct gtcgctattc tactccacaa atcattgtca ctgataatgc      4140
     tacgtctttc cggaataact taattgacag tttatgcaag aaatggggta taacgcatgc      4200
     ttattcgtcc ccataccatc cacaaaccaa tttatcagaa cgtgtcaatc gtgtcatcaa      4260
     gacaatgatt cgaagttatt tggatggcaa acctcacacc cggtggccag acaatctccg      4320
     tgctttccaa cttgctataa actcttctca ccacgatagc acgggatttg caccaactca      4380
     aattttgttc aatatctcac camatttacc gattgacaat catttagcag atccgagtga      4440
     taatcatgca gagggagatg aaatatctaa tacaaatgac ttttattctt gtcgttttgc      4500
     agaattccag gatattcttc gtaccgtcaa gcttaatctt caacaagcac atcaacaaca      4560
     gaagacttca tacgataaaa atcactcgga tgacaagtta ttagtaggcg atcaagtcag      4620
     tatcaaaaac actatattat ccaataagga tcgcaaaatc acagccggcc tatstccgct      4680
     ttacaaagac gtggggacga tttcaaaagt cataaacgat cttacatatg aagtcacctt      4740
     atccgatggt tctaccaagg gacccttaca catccaaatg ttacggcgtt atcatccacg      4800
     tcctcatcct tcaccatctc cttccattga atcatcacct tcatctcaac catcgtctcc      4860
     accttcacag aatccaattc catcaccttt acaatcgcgg tactctctac gtccacgcgc      4920
     tgccgttgac tatcgtgcct aactgtggga actagccaac attttcaaac tatacaattc      4980
     gaaattgtcg tcttggcagg gggactt                                          5007
//
ID   Gypsy-8_SiCu-LTR repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-340
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5086-5086 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 340 BP; 120 A; 56 C; 60 G; 104 T; 0 other;
     tatgggacca ctcatagagt tgcggcacgt cagtctacat ctcaccaaat ataaaatgtt        60
     tatggccatg tggatatctc atggataggg gaaagtgaac tgaaagatct cagttcatgc       120
     aagattggat ttagacagcg aagcaagtac aactgacttc accagttgta gtgctatata       180
     aattagaaat aaattcatat ctcaaatttc gttaacgata gttgtttaat aaataaatat       240
     tcaaaccaaa ctatcataat gtcggccttt tcataaatta ttatatcatg gatcaggtca       300
     aacaggggtt aaagtaaaat ttgctacacc ttctgttata                             340
//
ID   Gypsy-8_SiOr-I repbase;    DNA;    INV; 6167 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-6167
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 345-345 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 6167 BP; 2325 A; 949 C; 993 G; 1895 T; 5 other;
     tggcgatcct gcctaagggc cttaatttaa ataagtttag ttaaacagta tggtcaaaag        60
     tgaatgtgaa aaagtgaaaa tagtgaaaca aaataaacta atttaccatg ggaaagacaa       120
     attctaaaca ttcggaacta accgataatg gtgtggtcaa ctccaacttc atcgtagaac       180
     aggagagcat acaagtgcca acagatgttc gagtactact gtacattgta gtagcagttg       240
     tggtaatttt acttctacta aaattacata aagcgtaccg aagggggctc cgaaaagact       300
     tatccagaag catggtcctt cgaacccaag cagtagatgt ttagtgcgag cagtagttat       360
     tgatggacag tgttgatggt atgtgaatat acaatttttt gcgttgtttt tatagccttt       420
     atttaacatt tatactcggt gtgaacgttt tatttttatt ttttgcatga aattacatga       480
     atttattaca atatgaaaat tcttacgtat atttaattat tacctacaca aaaaaaaact       540
     tcgctatttt aaccaaaaat gtacaacatt ttttattttt ttaattaaaa agaaagaaat       600
     tctattagtt atgaattagt taattacttt ttgttatgtt tataaggata agaagttttt       660
     ttttgttttt ggtattaaat aagggatatt gtgttttttt tgttttttat aattttttta       720
     tttcttactt ttgtataatt tatgtctgat cattgggaag ggatccttgc caagctacta       780
     agtttaagta atctcgttag aaacgaatca aaacgcgttc ttaaaaaaca aatacctaag       840
     agtgatacaa ttaaaaatga agtccaagca aatttattgg agtactttaa taattttgtt       900
     aaattagtac gatttgttta tccatcactt aataaagaac aggaaattta cattaaaaaa       960
     cttttacttc gttgagagat agagtcataa gatcatatca ggttttaaaa gtaccctaca      1020
     aagttccaac ttcgtatttg gaatatataa atctagaaat atttgacgaa gaattcgagg      1080
     aaagtgaaga taaagaagag tcttctgaat cagaggcaat cccagaacaa aatattccta      1140
     aaataaaact tgaaaacatg gctatgtcaa aaacagaatt tttcaatttt gcgagtaaaa      1200
     tttttcccaa cgaattcgac ggttctccaa gtaaattaca gtccgttata gactccttaa      1260
     atttactgcg cgtaaattgc gaaaaccacg aaaataatgc ggtggcctat gtgaaaacga      1320
     gactggttgg aaaagcacgt gatttaattg atgataacga taatctggat accataatta      1380
     ataagctacg aacacgcatt aaaacagaaa gttctcatat ggtaacagca aaaatacttt      1440
     ctttaaaaca gcaacataaa gattccacaa gatatgccac agagattgaa gttctaacag      1500
     aaaccctgaa aagagcctat ataaatgaag gagtgcccat agcagtagct gaatcctata      1560
     cgacaaatac gatagtcaaa gctctaagaa caaacagtaa ttccgagaaa gtaaaactaa      1620
     taatggaggc tggcaatttc accaactgcg aggaagcaat ttctaaattt ataactatta      1680
     gtggagatac tacgccagat agtagcacaa tcttttatac aagaaattct cagcgttaca      1740
     gagctggaaa caggcatcat agagggcatc aaagtcgcgg aagaggacac tattcagaga      1800
     actatactaa taatagtgac tatagaccca cccagagata tttaaatgca aatcaacagt      1860
     accataatca tcatggtcaa tataatagag gtcgaggaaa ctctaggcct aatcatagag      1920
     gacagtttcc tagatatgtc aggcattaca ctcaggaaga gtcgggaaac gtacaggacc      1980
     cccagccagg tccactgggg tcgctataaa aatattccac atggacctat cactttcgaa      2040
     ctttgttgta gtccaaacta gcatgacaga taatcgcaaa attactttat tagttgatac      2100
     aggtgcggat atatctttat ttaaaaattt taaaatttct cctaaacaat ttattaatga      2160
     atataacata agcaatatta aaggtattac agatggctcg acgagttctt taggcacaac      2220
     taacacccaa atttttatta ataattatgc aataaatcac tcgtttcata tagttgagca      2280
     aaactttcca ataccagctg acggaatttt agggcgagac tttatttcga aatatcaatg      2340
     tcaattagat tacgctaact ggacattaac actacaaatt tttaacgaaa aaacaacatt      2400
     gccaatattt tcawgtccag aagaggaatc tttggtmatc ccacctaggt gtgaggtcat      2460
     waggtatatt aaaaaattca cgcaactaaa gactgattct gttattttga atactgaaat      2520
     cgccgacgga gtttttattg ctggttcaat tgtttcaaaa tcaaatccaa tagttagamt      2580
     tttaaataca acatttgaaa gtgtcacaat aaaaaaacgc tgacatacag ttttccaatc      2640
     taaataattt ttatgtttac tcaattaacc ccgaactaaa taatagagaa tcaaatttat      2700
     tacaacagtt aaacaaaaac atccctgact ttgcaaaaaa cgatactttt aatttatgta      2760
     aagaattttc agatattttt tgtttaccat ctgataaatt aacaaaaaac aacttttatg      2820
     aacaaaaact taaattgctt gattctgccc cggtttatat aaaaaattac sgcacgccgt      2880
     actcacaaac aaatgaaata aattgtcaag tcaacaaatt gctggaaaat gaaataatcg      2940
     aaccatcaac agcggaatat aatagtccga ttttattagt acctaaaaag tcaactgatg      3000
     accaaaataa atggcgatta gtcattgact atagacaggt aaacaagaaa ctaattgcag      3060
     ataagtttcc tttacctaga atagatgaca tccttgatca actaggtaga gcaaaatatt      3120
     tctcaacgtt ggacttaaaa gctggattcc atcagatttc tttggaaaag aactccaggg      3180
     acatcacgac attcagtaca aataatggct cgtatagatt tactagatta ccatttggac      3240
     taaaggttag cccaaacagc ttccaaagga tgatgtcgat agcatttgct ggaattacac      3300
     cggaaaaagc attcttatac atggatgatc taattgttat aggctgttca aaaaatcatc      3360
     atttgcaaaa tttgaggaag gttttctata cttgtagaaa atacaattta aaacttaacc      3420
     cagaaaagtg taattttttc caaaaggagg tcacattttt aggccataaa ataacaagtc      3480
     atggcatttt gcctgacgat tcaaagtttg aaatcataaa caaatttcct acaccgacaa      3540
     atgctgacgc ggtaaaacgg tttgtcgcgt tttgcaatta ttaccgtcgt ttcattccaa      3600
     actttgctaa catttgtaaa ccgcttaata agctaactag gaaaaatata atttttgttt      3660
     ggtcacaaga ttgtcaaaat tcttttgaaa agttaaaaac tgctctggtc caacctcaaa      3720
     tattgcaata cccagatttt aacaaacagt ttatagtaac aacagatgca tcaaaagatg      3780
     cgtgtggagc tgtgttatca caagacttta atggtaaaga cttacccata gcatttgcat      3840
     caaaatcatt cacaaaaggc gaatccaata aagcaaccat tgaacaagaa ttgctggcaa      3900
     tccactgggc aataaattat tttagaccct atttgtatgg tgtaaaattt ttggttaaat      3960
     ctgatcataa gccgctagta tatttatttt cgatgaaaaa tccttcatca aaattaacgc      4020
     gcatgagact cgatttagag gaatatgatt ttgaagtcga gtatattaaa gggaaaaaca      4080
     atgtaggtgc ggacgcactg tcaagaataa caacatctga tttaaaagaa atttctaatc      4140
     aatcggctaa aatactagct gtaacaagat caatgactaa aaaacaggaa aataaaaact      4200
     ctgacacata tgactcttcg caaaataaaa tacttattct acctaaaatt tacgaaacct      4260
     tagacaatag cagtatactt aatttacctt tagtaagttt tgaaattaag tcattatatc      4320
     ttaggataat aatgagatta aaaggaagat tcagcgctga atcaaacatt ccgatcatta      4380
     atggtaattt ttctctagag gaagtattgc ctaagcttga atcaatggct aatgatcata      4440
     atattaaaag tttaaagtta aaattaaatg accaaatttt tcaaatgtgc acaataaatg      4500
     aattaaaaga aattggtcaa gaaaaattaa aaaaggtaaa cattttgtta tttaaggaac      4560
     cacaagttat taaaaataga gatgagaaac tcgctttaat acaaaaatat cacgatgatc      4620
     cattaattgg tggacactgt ggacagaaaa aactacttaa aaagttaaga gtcaattata      4680
     gatggaaagg tatgtcaaaa gaagttgctg tatacattaa aaactgctat aagtgtcaat      4740
     taaataaaag cagagtgaaa aaccaagagc caatggtaat aacccctact cctcaaaaag      4800
     catttgacat cacatcaatc gacacagtag gtccatttat gaaaacatca aaaaataatg      4860
     tatatgcagt cacaattcaa tgtgaattaa ccaagtacat agtcatcatt cctataccta      4920
     ataaagaggc cgcaacggta gcaagagcta taatggatca tttcatactt atttatggtt      4980
     caatgaagga aataagaaca gatttaggca ccgaatataa aaatgaaatt tttgcaaatc      5040
     taactaaaat gctcaacata agtcaaaaat tttcaactcc ttaccatagt caaacgatag      5100
     ggggatgtga aagaaatcat agagttctga atgagtacct cagaatgtat ataaatgatg      5160
     caaaatctga ctgggatgac tgggtacaat attacagttt ctgttataac acaacgccca      5220
     gcatctatca tgatttttca ccgtttgaac tggtattcgg acggaaggca atgatttctg      5280
     aaatactttc aggtgatact gtagatccta tatatgactt agacgcttac tatcatgaag      5340
     taaaatatag aatgcaatta gccaataaac gtgcgaacga attcattttc aaagctaaac      5400
     aaaaccgtaa agtaatttat gacaaacttt caaataaaac taattttaaa ccaggcgatt      5460
     tggtcatgtt atctaacgaa aatagaacca aatttgatcc ttggtataaa ggtccctact      5520
     caattattag tattgaaggt gtaaattgtg tgatcaaaga ttgcgcggaa actaacggaa      5580
     agcaaatgaa cgtgcataaa aacagagtgc gttcgttaca ataacaatta gcaaaacgtt      5640
     attcgtattt ctaagaattt catagcatag acaaaaagct cgcgagtgta taaaaatagt      5700
     taagttaggt cagtatagaa atgctgaggt agataagtta tttttaagtc atcatattat      5760
     attatgtgta aatctctctt ttagaaatat tttttttaat tttattgtga aacacgtact      5820
     tataataatt tatagtctta tgaaatggta cactaataat tatactttta tttttacatt      5880
     tttttaacca agaccaggta tattattgta aataggatag gtaatatttt attattatat      5940
     atatgggttc tatagatata gattttgtgt cgtatttttt atgtttatta tttttaataa      6000
     tatctagtta ataggttagt atattggtaa acttaattaa agcaacagtt tatttataaa      6060
     attgcgacac ccaatggata tgatataatt attattgtca atttttgctt acgccgaatg      6120
     tcctttattt gtggccagaa taaagttcat tctactgaaa ggggaga                    6167
//
ID   Gypsy-8_SiOr-LTR repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-171
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 333-333 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 171 BP; 55 A; 28 C; 30 G; 58 T; 0 other;
     tgtagtgcga cctggttacc caacaattgt ttgtttaata tttcattaat tattgcaaca        60
     acaaaagcat agcataccat cttttgtaac taggttagct aattcgaata aatgtattca       120
     aagggtgaac atgtgtttga ttttcccgta ttggaatgag acgacatcac a                171
//
ID   Gypsy-8_SpEx-I repbase;    DNA;    INV; 5532 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5532
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4067-4067 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           583..1764
FT                 /product="Gypsy-8_SpEx-I_1p"
FT                 /translation="MSISELQSIYNKLKDIKDYLVKVGPARRQKSDTVQNK
FT                 IIEAQVVYSRLEFTSSDIRKKIENSEISADSLLTVNKLINDIHTLYNKILN
FT                 LVICKDDSDSKESNKLSKMASDNFDLKSAIALLPVMTGQEHVTLQIIDSIQ
FT                 LYSSMLNENGKKQLIEFVLKTRLTSSAKLRLKSSYSSVDVLIADMRKYLVP
FT                 KKSSVAIQSQMFNTKQGHRSIEKYGAELERLFVDLTIAQADGNDEMYQVLL
FT                 PLNEKIAIKRFADGLSNSRLSTIIASRSCNSLSETIRTAIDEQLLRPDDEQ
FT                 SVMRMKQNNYKKYNNNFSRNNFRPNNRNFQPQHVQSSYKSRVYYNNGASRG
FT                 PQHRGCRTRGPSSNRGTYNRDSYKSVAHASQQQHDDIEDKLNSEFFRPENE
FT                 "
FT   CDS           1724..5440
FT                 /product="Gypsy-8_SpEx-I_2p"
FT                 /translation="KINLTVSFFVPKMNSSFILNYNSSNVVSLNIGSKSID
FT                 LLVDSGANLCALKYESLQNYTEYMSQLHEDKITIKGISGKLISEGFVYIHL
FT                 EYNSVIFRQKFYVFKNLSCSADGILGEDFFRQYNAVIDYRENILQLSKNNE
FT                 TIYVHINKNICYIHSIPPRCETIKYVPCQSCHDVVILADEIEKGVFIAGMI
FT                 TKPNKGRIPIKILNTLNTKINLDLSKVKTFSVNEFEICCFQKKNTSVARVK
FT                 TLFDLLDINYLNKDERIHIEKICAKYADVFHLPGDKLSVTNLMEHNIVLKN
FT                 DATPVYVKPYRIPHSLKQEVEKQVQEMLDNDIIEETVSEWSSPVLLVPKKA
FT                 DKSNEKKWRLVVDYRQLNNKIQDDKFPLPNITDILDSLSGSIYFSKLDLSQ
FT                 SYYQLSLNQNSRKYTAFNLDKMYQLSLDKDSRKCTAFSAGKQYQMKRCPMG
FT                 LKTSPSVFSRLMTIAMSGLNYKKCFQYLDDCVVIGKSMEQHNSNLISVLNR
FT                 LREVNLKLNPMKCEFLRKEIVYLGHKITSEGIFPDPNKINIMTNFPRPTCA
FT                 DEVKRLVAFANYYRRFIPKFADIVFPLNQLCKKGIVFRWTNDCETAFQNLK
FT                 LTLTRPPILDYPDFSESNIFQLQTDASKIGLGAVLSNSNGRVIAYASRSLK
FT                 PAESRYPIIELELLAIVWAVRHFRPYLYGRKFKIFTDHRPLVYLFSLNDPS
FT                 SRLTKFRLYLEEYDFDVEYVPGRNNAAADALSRITVTSSDFKNMRDKTISV
FT                 LTRAQKKKLEQERLNDRQVVENSSSVDRPDQPVAVEVLKKPDEIVELVFCD
FT                 ECRESNLSFSDIVTCTYVPTQSAIQLNTRSLSTPEVLARDLENLCRNLGIK
FT                 ELLIIKNKRNALHIKVLLRVMKEFQILIPRFLIVRDVVRVVDKDHIKVILN
FT                 DFHLLPTSGHAGINRMINNIKKSYYWPGLNSDVTDYVRKCKSCQIQKHCNK
FT                 RIKEPMVVTSTPDTAFDSISLDLMGPLEIDNHNNKYILTLQCNLTKFVEAY
FT                 PLSRKDAESVARTFVNNFILRYGIPKQILTDKGTEFTSSVLVEICKLLKIE
FT                 KLTSTPYHHETLGSLENSHKHLGAFLRIQCENNKTNWSDWVPFWCFSYNTS
FT                 VHTETKYTPYELVYGKMCNIPSNVFLEIEPLYNYEDYPKELKYRLSKALAE
FT                 AKQNLIKSKILRKNVYDKNMNSIKYEKGDLILLKNQTGTKLDPVYNGPFEV
FT                 LEDLSPNVKILKNNKVVVVHKNNTIKFVS"
XX
SQ   Sequence 5532 BP; 1990 A; 893 C; 1002 G; 1647 T; 0 other;
     tggcgaccct gccatcttcg accaatatca agaaataaga gttaatagca agaataaaga        60
     ttcagaaacg aaaatcaaga atctagaaga aattactatg ggtaaaacct actccaaaga       120
     agaagttgta atcgcacaaa acggaaacgg cgaagcttcg gcatccacaa ctcagcatat       180
     gcccaaaagt acgagtaccg aattaatttt gttaatcacc atcgtcgtct gcgcctccgt       240
     tgccgtcgta tactttgttt tgaagaagtg ccgcacctac gcagttaaca cgttacggcg       300
     agaactaaac gcagcaaacc tcaacgacgt cgccagaatc catttgaacc cttaaagatg       360
     tgttgccgca gaggatcggt gtccagggta tagcccggcc cactaacccg agtctacgtg       420
     cacttcggca tcgcccagcc gcccagccgc ccagcagcag cccatcggca tcgtgcagca       480
     aacagataaa tggcgtgaaa atatcgtatc taattttgct acaagtaaga caaataacta       540
     tacattaatc taagtactta aatttagctt agtattgttg taatgagtat atcagagttg       600
     caatctatat acaataagtt aaaagatatt aaggattatt tagtgaaagt cggaccagca       660
     cgccgacaga agtctgacac agttcagaat aaaattatag aagcgcaagt tgtgtatagt       720
     cgtttggagt ttacttcttc agatattcgt aaaaagatag aaaattctga gataagcgcc       780
     gatagtttac taacggtaaa taagttaatt aatgatatac atacattata taataaaatt       840
     ttgaatttag ttatatgtaa agacgattca gattccaagg aatcaaataa gttatcgaaa       900
     atggcttctg acaattttga tttaaaatct gcaattgccc tattgcctgt gatgacaggt       960
     caagagcatg ttactctaca gattatagac agcattcagt tatatagtag tatgcttaat      1020
     gaaaatggta agaagcaact aattgagttt gtgctcaaaa caagattaac gtctagtgct      1080
     aaactacgct tgaagtcaag ttacagtagt gttgacgttt taattgcaga catgcgaaag      1140
     tatttagtac caaagaaatc gtctgttgct atacagtcgc aaatgtttaa tactaaacaa      1200
     ggtcacagat ccatagaaaa atatggtgca gaattagagc gtttattcgt cgatttaact      1260
     atcgcacagg ctgatggtaa cgacgaaatg taccaagtat tgcttccgtt aaatgaaaaa      1320
     attgccatca agcgatttgc agatggattg tccaattctc gacttagtac gataattgcg      1380
     tctcgctcat gtaattcgct ttctgaaact attaggacag ctatagatga gcagttatta      1440
     cgtcctgatg atgaacaatc cgttatgaga atgaagcaga ataattataa aaagtataat      1500
     aataattttt ctcgaaataa tttccgaccc aataatagga atttccaacc gcaacacgta      1560
     caaagtagct ataagtcgcg agtttattac aataacggag cgtcacgtgg cccccaacat      1620
     cgcggatgtc gcactagggg accgagcagt aatcgcggta catacaatcg cgattcttat      1680
     aaaagtgtag cgcatgcatc gcaacaacaa catgatgata tagaagataa acttaacagt      1740
     gagttttttc gtcccgaaaa tgaatagttc gtttatatta aactataaca gtagcaacgt      1800
     agtgtcatta aatattggta gtaaatcaat agatttattg gtagacagtg gtgcaaattt      1860
     atgtgctttg aaatacgaat ccttacaaaa ttataccgaa tatatgagtc agcttcatga      1920
     agataaaata acaattaaag gtataagcgg aaagttaatt tctgaaggat ttgtttacat      1980
     acatttagag tataatagtg ttatttttag acaaaagttt tatgtattta aaaatttgtc      2040
     atgctcagca gatggtatat taggtgaaga tttttttaga caatacaatg ctgttattga      2100
     ttatagggaa aatattttac agttatcaaa aaataacgaa actatttacg tgcacataaa      2160
     caagaacatt tgttacatcc attcaatacc acctcgttgc gaaacaatta aatacgtacc      2220
     ttgtcaatcg tgtcatgatg ttgtaatttt agctgatgag atcgagaaag gagtatttat      2280
     tgccggaatg ataacaaaac cgaataaagg tcgaattccg attaaaatat taaatacttt      2340
     gaatacaaag ataaatttag acttatctaa agtaaaaact ttttcagtca atgagtttga      2400
     gatatgctgt tttcaaaaga aaaacacgtc agtagcacgc gttaaaactt tgtttgattt      2460
     actagatata aattatttga ataaagacga gagaattcat attgagaaaa tttgtgctaa      2520
     atacgcagat gtcttccatt tacccggtga taagttatct gtaactaact taatggaaca      2580
     taatatcgta ttaaaaaatg atgcgacacc tgtttacgta aaaccgtata gaatacccca      2640
     ttcattaaaa caggaggtag aaaaacaggt ccaggagatg ttagacaacg acatcataga      2700
     ggaaaccgtt tccgagtggt ctagtcctgt cctattagtt ccgaaaaaag ccgataaatc      2760
     taatgagaaa aagtggagac ttgttgtaga ttacaggcaa ttaaacaata aaattcagga      2820
     tgacaagttt cctttgccaa atattacaga tattttggat tctctttctg gcagtattta      2880
     tttttccaaa ttagacctat cgcaatcata ttaccaatta tcattaaatc aaaattcacg      2940
     taaatataca gcatttaatt tggataaaat gtaccaactt tctttagaca aggactcacg      3000
     taaatgtact gctttctcag cgggaaagca atatcaaatg aagcgttgcc caatgggatt      3060
     aaaaacaagt cctagtgttt tttctagact gatgactatt gcaatgtcag gcctaaatta      3120
     taagaaatgt ttccaatatt tagatgattg cgtagtaata ggaaaatcaa tggaacaaca      3180
     taactcaaat cttatcagtg ttttgaatcg gttaagagaa gttaatttaa agttaaatcc      3240
     catgaaatgt gagtttttga gaaaggaaat tgtttactta ggccataaaa ttacatcgga      3300
     aggtatattc ccagacccaa acaaaataaa cataatgact aattttccga gacccacttg      3360
     tgctgacgaa gtaaaacgat tggttgcatt tgccaattat taccggcgat tcatacctaa      3420
     atttgccgac attgtatttc cattgaatca attgtgcaaa aagggtattg tatttagatg      3480
     gacaaacgat tgtgaaaccg cttttcaaaa cttaaagtta actttaacga gaccacccat      3540
     attagactac ccagattttt ccgagtcaaa tatttttcaa ttacaaactg atgcttcaaa      3600
     aataggtcta ggtgcagtat taagtaatag caatggaaga gttatcgctt atgcaagtag      3660
     aagtttaaag ccagccgagt ctagataccc gataatagag ctagaactat tagctatcgt      3720
     ttgggctgtt cgccacttta gaccctattt atatggaagg aaatttaaga ttttcacaga      3780
     ccataggcca cttgtatacc tatttagttt aaatgaccca tcaagtagat taacaaagtt      3840
     tcgattatat ctagaagaat atgactttga cgtggaatat gtccctggtc gtaataatgc      3900
     agctgcagat gcattaagcc gaatcacggt gacatcttct gattttaaga atatgcgtga      3960
     caaaacaatt tcagtattaa ctagagctca aaagaagaaa ttagaacaag aacgtttaaa      4020
     tgatagacaa gtagtagaga attcttcttc agtggatagg cctgatcaac ctgtcgctgt      4080
     cgaggttctc aaaaaacctg acgaaatagt ggagctagta ttttgtgatg aatgtaggga      4140
     atcgaatttg tcgttttccg atattgtgac ttgcacttat gttcccacac agtctgcaat      4200
     acagctaaat acccgatcgt tatctactcc ggaagtgtta gcgagggatt tagaaaactt      4260
     atgcagaaat ttagggatta aagaattatt aataattaaa aacaaacgta atgcattaca      4320
     cataaaagtt ttattaaggg taatgaaaga atttcaaatt cttatcccac gatttttaat      4380
     tgtgagagac gttgttcgcg tcgtagacaa agaccatata aaggtcatat taaatgattt      4440
     tcacctcttg cccacgagtg gacatgcagg cattaatcga atgattaata atataaagaa      4500
     aagttattac tggccaggat taaacagtga cgttacggat tatgtccgaa agtgcaaaag      4560
     ctgtcaaata cagaagcact gtaataaaag aataaaagaa ccgatggttg ttacatcaac      4620
     accagatacg gcatttgata gtataagttt agatttaatg ggcccactag agatagataa      4680
     tcataataat aaatatatct taacgttaca atgtaattta actaaattcg tagaagcata      4740
     ccctttgtct cgaaaagatg cagaatctgt cgctagaact tttgttaata attttatatt      4800
     acgttatggc ataccaaaac aaattttaac agataaagga accgagttta cgtcaagtgt      4860
     actagttgaa atatgtaaat tgttaaaaat tgaaaaatta acttctactc catatcacca      4920
     cgaaacatta ggatcgctgg aaaacagtca taaacactta ggagcatttc tcagaataca      4980
     atgtgaaaac aataagacaa attggagcga ttgggtacct ttctggtgct tttcatataa      5040
     tacatcagtg catactgaaa cgaagtacac tccatacgaa ttggtttatg gaaaaatgtg      5100
     taacattcct agcaatgtat ttttagaaat agaaccttta tataactatg aggattaccc      5160
     taaggaacta aaatatagat taagcaaagc cctagctgag gctaaacaaa atttaattaa      5220
     gagtaagatt ttaagaaaaa atgtatatga taaaaatatg aatagtatta aatatgaaaa      5280
     aggggattta attttattga aaaaccaaac aggtactaaa cttgatcctg tgtataatgg      5340
     tccatttgag gtcttagaag atctttcccc aaatgttaag attttaaaaa ataataaggt      5400
     tgttgtggta cataaaaata atactataaa atttgtatct taatttaaga ttcttttata      5460
     ctttgtgttt ttgtatatga tttttttttc cctaagggga aggggtagta gccctttact      5520
     tttcagggga gc                                                          5532
//
ID   Gypsy-8_SpEx-LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-199
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4137-4137 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 199 BP; 71 A; 31 C; 27 G; 70 T; 0 other;
     tgtaaggtat tgagaaataa tattcgcaga aaatcaattg ttaaatgtat tgatcacgtt        60
     ttgcttagta tgtaagtttg ttataatgta agattttaga gtataattat tcattcaata       120
     aaccgacatg taactgtcaa cttgtgtcct tattgaatca cctctaccct accagcacca       180
     aactaaatac aacattata                                                    199
//
ID   Gypsy-8_SpFr-I repbase;    DNA;    INV; 3197 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-3197
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1847-1847 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It appears an internally deleted
CC   derivative.
XX
SQ   Sequence 3197 BP; 880 A; 689 C; 769 G; 859 T; 0 other;
     tcagaagtgg gataaaggac ttataagccc acactaacat taatttgctt ttgaatttgt        60
     aaatcagttg aaaacaagaa aaccgttaac ttttaaactt tgctttgttt acaactactg       120
     cttacttcag ttttctttct ttttactatt tttgtgttta attgctgtat ttacgagacg       180
     tacaaggatg cctagtccac ggaggcgccc ctccagaggc gattcgcgta atcgagatcg       240
     gcatacttct cgtaggtctc gcgaccgtag tgaggttaga tcaaaccgca attcgagcga       300
     cagacaacga acttcgcggg atggcttgcg tgtccgagat cgacatgatt ctcgcaatac       360
     tgaagtgcat cggtcgcgta ctcgtgttag gtgcgaattg cgtagtaggg atcgctctcg       420
     tagtgctcct cgcgaccggt cgagatcaca ctcgcgttca atgcgttctt ctaacgatga       480
     ggcgcgctct gctcataata ccgatacctt gcctacaatc gttactgcta taccagaaaa       540
     ggttgcgccg cgacagcagt ccatggagtc tagtaccccc tgttctgaag cgtctaccct       600
     tgctaatgct ttgatgcagg caattaaaac gatgcaaccc tcaaggtcgc aacattatta       660
     tgtgttaatt tcgacatctc gattgaagta gatttaaatc atcataattg gaactgacgt       720
     attaaatcgc gacggcgacg tatgacgtat tacattcgaa ctaaagatag acaatatctt       780
     acgcgcacag acatgattaa taaagaggtt aacgctatcg ataaaagtgt tgagttaaaa       840
     ctgaatacac ttttaagggg tgtagaattg gaaagctctg tcataaatga ttttttggag       900
     ttcttaataa aagggaccgc tgtaactaca gtccgaacag gagaaatgga aataaggctt       960
     accagttcta ctcctgtcgt ttataaaccg tataggctct cgtattccga aaaacttaaa      1020
     gtacgggaaa tatttagaga aaggaatcat tagacgttct aaatctgaat acgcgagtcc      1080
     aatcatccta gtgaggaaac gcgatgggtc ggacagactt tggtagattt tagggcacta      1140
     aatcgtataa ctggaaagac cgttacccgc tcccactaat agacgatcac attgataggt      1200
     taggcagtta taaattcttt tcctgtctcg atatggctac tggtttccac cagatccctt      1260
     tgaaagagga atgtatacac ctgacagggt gttacaccag aagaacactt cgaatatgtc      1320
     aaaatgcctt ttggtctagc caattctcca gtagtttacc agcgcatcat caataacacc      1380
     cttcgcgcac atattaatga gggtaacgtg ttagtttatg tcgatgacgt cctccttctg      1440
     agtaatacgg tacacgaggg aattgaactg ttgcgtaagg tacttagaat tctcacaata      1500
     gctggttttt caataaatct ggccaaatgt tcgtttctgg ttactgaagt cgaatattta      1560
     ggtagactca taacgtaagg tcaggttagg ccgagtccac ggaaagtgga agccttagtc      1620
     agctctttgc ctcccgagaa cgtaaagcag gtgcgacaac ttttaggctt ggcaggatcc      1680
     tctaccctat ttaccgacaa gattctacgg aacttaaacg cgtcattact caggctatct      1740
     ccttgtttgg ggtgccaaaa cttatggtca cggacaaagg acgtatgttc gagtctaaag      1800
     aattcgtggc atggattaac gaactcggct gcaacctgca ctacatcacg ccagagatgc      1860
     accaggcaaa tggtcaagcg gaaaggtaca tgcggacaat actcaacatg ttacgcatcc      1920
     aagccaacca caaaaatctg cagtggtcgg aaactctgtg gaaactacaa ctggtgctga      1980
     acatcacaag acagaagact acgcaggtat ctcccttgaa tcttctaata ggcacagaat      2040
     ctacaactcc tgtggttcga gcgctagtac gtgatgtggc aatcgagggt ttggcaccta      2100
     acagagaggc actacgtgaa atcacaagaa gcagagcccg agaactcctc agtaacaacc      2160
     aaatcaagca agacgagcaa gttaaccagc gacggagtac accacgccaa ttcaatgttg      2220
     atgacttggt ctttgtaatc aaatactctc agttggcagg gaaactcgac tccggcatgc      2280
     gcggcccata caaggtggtg gaagttctac ctagtggccg ttacacgcta cgtttgctcg      2340
     gcggcagtta tggtaaaaca acgcaggctg ctgctcagtt catggtgccg tggcggggtg      2400
     agtggagccc tgaaacatgt gccgcatttt ttgaaagtaa gttgacctca taatgttgac      2460
     agttatgcaa ggctcattag tacgaatatt atctaaatgg tgaacctcac ttgtatgatg      2520
     cactctgctt gttgaatgcc tcagcacgga tgattgcggt caccgtgttg ggaagcctcg      2580
     acacgttcga atacggtctg cgtgttggga agcctcgaca cgttcgaata cggtctgcgt      2640
     gtcgggaagc ctcgacacgt tcgaatacgg tctgcgtgtc gggaagcttc acacgttcga      2700
     atacggtctg cgtgtggaat gcgctcgtac gtttgaatac ggtcttcgta cgagtgggtc      2760
     tgttttgcag attatgttat tggattctcc ggtgatttaa tgatgaagtc aaccggggag      2820
     attaagcata caggccttgg aaactcacag tttatgcctt ggcttggttg tagtttgttt      2880
     gctttttctt tgagaacgat gaatgtgcgt cttgtgagat agttctgata gaatgaggaa      2940
     tgaattgact gagtggagac tgaatgattg gttagcaaga ttgggtgttc ctatgttgta      3000
     ttcctgaaca cttttagatg aaactaacga tgacgaggag acggaagcgc aaatagagtt      3060
     tgctcctaca gctgcactgt ccatgccctt gctggatgag ggtgttgtaa ccgatccacc      3120
     gacctctcca gtggccggtc ccagcgggat cacaagaaga aactgtgtcg aggacgactc      3180
     accgtcagga gaggccg                                                     3197
//
ID   Gypsy-8_SpFr-LTR repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-346
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1841-1841 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 346 BP; 97 A; 44 C; 67 G; 138 T; 0 other;
     tgtaaggagt ttctatctat catgtaagga gttgtaagga gtttctatct atcatgtaat        60
     gagtttctat ctaccctgaa gtagtctatg aaaggaggtt gttaataaga aatgctccta       120
     tttgctcgcc agctctcgga ttgtacggaa gggttgtgat aatctgtgtt ggtcgttatt       180
     aaggtcacgt aagccatttt tccaatcgtt ttgtttaatt attgaagttt gcagtatttg       240
     attaattgtt atgttgtatt gattaaaatc tgtaagattt aaaaataaac ggcttcttgt       300
     cgattgtatt tattttttta ataaaattcc acttctgaac ctaaaa                      346
//
ID   Gypsy-8_TCa-I repbase;    DNA;    INV; 4664 BP.
XX
AC   chrUn_2;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_TCa_;
KW   Gypsy-8_TCa-LTR; Gypsy-8_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4664
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_2; Positions   25842   30505.
XX
CC   'AACG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1364..2173,2177..4618)
FT                 /product="Gypsy-8_TCa-I_1p"
FT                 /translation="MGTVKITLKIDAVQSEIIVDVVSEGVQNVPVLVGRNF
FT                 TELTNVGILKDDVSLRFFTLPPMETRSVQAAKVKLFVAKETIIPPMHYGHM
FT                 PVRSDIQNGEIFVDYSLRLEPEHEYEIPSVVLQLRENACVKLPVINFSKNE
FT                 IRFKKNTTIARGRICREEKYVPTILRISKTPQPELPLDQLDVGNVRPQTKQ
FT                 HLIDMLSEYRDCFALTVNELGCAKNVEMEIRLEEEKPFTFRPYRLAPSEVE
FT                 KVNEMITELIQAEIIQESESNYASPIVLVKKNGEKRLCIDYRKLNSMTVKD
FT                 SHPLPRISEQIDRLQGAKYFSSLDLKSGYYQIPISENSRHYTSFVTPSGQY
FT                 EYLRMPFGLTNAPRVFQRFMNNLLRPVSKIAAVYLDDVLLHSNTEGQALCD
FT                 LREVLDVLRAEGLTLNFQKCAFLKETVHFLGFEVSDGIIRPGLDKIQAVKN
FT                 FSPPKNVKQIRQFIGLTGYFRHFVKNYALIARPLTNLTRKGVNWKWDTEEE
FT                 LAFERLKEILTSRPVLSIYDPTAVTELHTDASSLGVAGILLQYQTDGRLHP
FT                 IAYYSRQTNEHERHYHSFELETLAVVESVKKFRIYLLDLEFTIVTDCNELK
FT                 ATSNKSQLIPRIARWWLQLLEFRFKVKYRAGTQMSHVDALSRNPNDSKTSK
FT                 DVLALDKADWVLAGQLTDPKIKELHNILSKPPSTEYKQNVHKNYALREERV
FT                 YRNTTKGLQWVVPKGMRQQVVRAAHDERGHFAAEKTLSRLSDCYWFPRMRD
FT                 YVSDYIACCIPCIMKKKPSGKQEGFLHPIPKPTKPFDTIHLDHLGPFPRSK
FT                 RGNVHIIACIDACTKFLFMRPVKSTKTVFVVNFLNELYVTYGKPRVVITDQ
FT                 GSCFTAAKFREHCDQNQVTHVKVAVATPRANGQVERLNRSILSVLMTGTLE
FT                 DNLWDQNVPMAQFSINNAANASTGRTPSELMMGYKPRHGTDSYLRDEVQKI
FT                 PTIVDDLIKLRLEASEKVAQVQKRQKELFDRKRKPPREYKVGDVVVVRKGE
FT                 AATGESRKLMAPFSQPMTVKAVLPNDRYLVTDMPNSHRTRRKAIYQRVIAV
FT                 DRMKPSTKPGGVSDESDGPNEDDQGEP"
XX
SQ   Sequence 4664 BP; 1453 A; 967 C; 1078 G; 1166 T; 0 other;
     atttttcaga agtgggatag acctacacag ctcaatttaa attgcgtata aatttttcat        60
     tcaataataa atgaacgata aaatatataa atttaattaa ttaaattttg ttcaaatgtg       120
     aggggttgtg tgtttgtagc aacgcatgac ttatctaact agcggcttta cccatttgcg       180
     aaatgattaa aacaatttat tggcgtatgt gttctttcgg ctaacagcga ttttataatg       240
     gcacccacca gaggacggaa aagacaggct gaatctcgtg cagagagccc agtcccagtt       300
     cgtgctggac aacccgatga gaatttggtg gcactcgtga cccctgttca aagcccagac       360
     accaccggta gtgtgggtgt ggaagtactc cgacggttaa ctgacgttat gtaacagtaa       420
     ctgggggtga tgcaatccct tattttgacc ccagcaatac cgaatttaac agcgaaagat       480
     ggtgtaacaa agtcgatgag tgtagagctg tattccactg gaccgaagaa actacagttt       540
     atttcgctat caccaagctt aagggcatgg ctgaagtttg gtatcgaagc ctaccgacaa       600
     tgatgaggac ctgggatgag tggaaaattc aattgcaaac agcttttcct gcacagacag       660
     attattattc gatgttgaag cgaatgatgg ccaggaaaaa gaagattgat gaagactaca       720
     cgacttatta ctacagcaaa ctggcacttt taaacgagct agagataacg gggaagaaca       780
     gcgtttcatg cattattggc ggtataactg acgcaatcgt aaaaactggt gcaaaagcag       840
     gccaatatca aacgcccgaa tctctgctgc aatacctatg cagtgtaacg gagaatcaaa       900
     cgtctacaac ccaagctggt aagggccgac atttctcaaa tccaaggttc agaccaaaag       960
     catcatttgg caaaaataat gctaagtctt caagagagct gatttgtttc aaatgccaga      1020
     aacccggcca tacagctaac gtctgttcgg cacggaaccg agaaatgcgc tgtacacttt      1080
     gtcgttctca tgggcatgta gcaaaggatt gtcggaataa gactacgaat aaaccgagtg      1140
     atcagaaaac cgtagcattg atcggtaatc cggtattggg cgacccaggc aaccgaaagt      1200
     tccataagga tgttttaatg gacaacttac tcgtgcgtac atcgacttgg gaagctcgtg      1260
     taccaccatt accaataagg aaatccaacg attaaaaatt accaaagtgg atactacgca      1320
     gatttccact ttgcgggggt atggcaacgg gaccgtcact acaatgggta ccgtgaaaat      1380
     tactttaaaa atagatgccg tgcaatccga aataatcgtt gatgttgtct cagaaggtgt      1440
     tcagaacgtt cctgttctgg ttgggcgcaa ctttactgag ctgactaatg tgggcatatt      1500
     gaaagacgat gtgagtctgc gtttctttac tctccctccg atggaaacgc gttcagtaca      1560
     agctgcgaag gtgaaattat ttgtggctaa ggaaactata attcctccca tgcattacgg      1620
     gcacatgcca gttcgtagcg acattcaaaa cggagagatt tttgttgact atagcctccg      1680
     actggaacct gaacacgagt atgaaatacc aagcgtagtt ttacaactac gagaaaacgc      1740
     ttgtgtaaag ctccctgtta taaatttctc caaaaacgaa attcgtttta agaagaatac      1800
     gacgatagcc agaggacgaa tttgtcgtga ggaaaaatat gtgccaacca ttttgagaat      1860
     ttccaaaact cctcagccag agttgccgtt ggaccagtta gatgtgggca atgtcagacc      1920
     gcaaaccaaa caacatttga tagatatgct gtccgaatac cgggattgtt tcgcacttac      1980
     tgtaaatgag ttgggatgcg ccaaaaacgt tgagatggaa attcgtctag aagaagaaaa      2040
     accttttaca tttagaccct accggctagc acctagcgag gttgaaaaag ttaatgaaat      2100
     gattactgaa ctaatacaag ctgagattat tcaggaatcg gaatcgaatt acgcttcacc      2160
     cattgtgctt gtctaaaaga aaaatggaga gaaacgactt tgtatcgact accgtaagtt      2220
     gaattcgatg acggtcaaag atagtcatcc tcttcctaga atcagtgaac aaatcgatcg      2280
     gttgcaaggt gctaagtact tttctagtct ggatttgaaa tctgggtatt atcaaatacc      2340
     tatcagcgag aattcccgcc attatacctc ttttgtgaca ccaagcggac agtacgagta      2400
     cttgcgtatg ccatttggat tgacaaatgc acctcgagtt ttccaacgtt ttatgaacaa      2460
     tctgcttcgc cctgtttcca aaattgctgc tgtgtatcta gatgacgtgt tattgcattc      2520
     aaataccgaa ggacaagcct tatgtgattt gagagaagtg ttggatgttt taagagctga      2580
     aggcttgact ttaaacttcc aaaagtgtgc ctttctcaaa gaaaccgttc actttctcgg      2640
     atttgaagta agcgacggaa taatacgccc cgggcttgat aagattcagg cagtaaaaaa      2700
     tttctcccca ccgaaaaatg tcaagcagat tagacagttt attggactaa ctgggtactt      2760
     tcgacatttc gtcaagaatt atgcactcat tgctagacca ttaacaaact taacacggaa      2820
     aggtgtgaat tggaaatggg acacggaaga ggaacttgcg tttgagaggc ttaaagaaat      2880
     tttgacgtcg agaccagtgt tatctattta tgaccccaca gctgtcacag agttacacac      2940
     agacgcaagt tcgttgggtg tcgctggtat tttgctacaa tatcagactg acggcagact      3000
     acacccaata gcctattaca gcaggcaaac aaacgagcat gagcgacact accattcgtt      3060
     cgagcttgaa actttggcag tcgttgaaag tgtcaaaaag tttaggattt acttgctcga      3120
     ccttgagttt acgatcgtta ctgactgtaa tgagctgaaa gcaacgtcga acaagtccca      3180
     acttattcca agaatcgcca ggtggtggct gcaactccta gagtttagat ttaaagtaaa      3240
     atacagagca ggcactcaaa tgagtcatgt tgacgcctta agtcgcaatc ccaatgattc      3300
     caaaacatct aaagacgtct tggctttaga taaagcggat tgggtgcttg caggacagtt      3360
     gaccgatcct aaaatcaagg aactacacaa tattttgtct aaaccgccat ctaccgaata      3420
     caagcaaaat gttcataaga actatgcact ccgtgaagaa agggtatatc gaaacacgac      3480
     gaaaggatta cagtgggtgg taccaaaagg tatgagacag caagtggtta gggccgctca      3540
     tgacgaacgg ggacactttg ccgcagaaaa aacgttaagc cgactctccg attgttactg      3600
     gtttcccaga atgcgggact acgtctccga ttatattgca tgctgcatcc cgtgcataat      3660
     gaaaaagaag ccgtcaggga aacaagaggg ttttcttcac cctatcccaa aaccaaccaa      3720
     gcctttcgat acgatacatt tggaccatct ggggccattt ccaagaagca aaagaggaaa      3780
     cgtgcacatc attgcgtgca ttgatgcatg cacaaaattt ctttttatgc gtcccgtgaa      3840
     gtcaacgaag acagtttttg tcgtcaactt cctgaacgag ctgtatgtga cctacgggaa      3900
     gccaagggtg gtaattaccg accagggaag ctgtttcact gcagccaagt ttagggaaca      3960
     ctgtgatcaa aatcaagtca cacatgtaaa ggtcgcggta gcaactccca gagctaatgg      4020
     ccaagtagaa cgacttaacc gaagcatcct gtcggtgctg atgacgggga ccttggaaga      4080
     caacctatgg gatcaaaatg ttccaatggc tcaattttct atcaataacg cggcaaatgc      4140
     ttcgaccgga agaaccccaa gcgaattgat gatggggtat aaaccacgac acggtactga      4200
     ctcgtatttg agagatgagg tgcagaagat tccaacgatt gtggacgatc ttattaaact      4260
     gcggttagaa gcctctgaaa aggtggctca ggtacagaaa cgtcagaagg aactctttga      4320
     cagaaaaagg aaaccaccca gagagtataa agtgggagat gtggtagtcg tccggaaagg      4380
     ggaagctgca acgggtgaga gccggaaact gatggctcca tttagccagc ctatgactgt      4440
     aaaagcggta ttgccaaacg atcggtacct agtcacggac atgcccaatt cacataggac      4500
     ccgtaggaag gcaatctatc agcgtgtcat cgccgtggac aggatgaaac cgtcgactaa      4560
     acctggagga gtttcagacg agtccgatgg tcctaacgaa gacgatcaag gtgaacctta      4620
     aaccgaagtc gtctcgggtc gagccgatta tcaggttggc cgaa                       4664
//
ID   Gypsy-8_TCa-LTR repbase;    DNA;    INV; 824 BP.
XX
AC   chrUn_2;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_TCa_;
KW   Gypsy-8_TCa-I; Gypsy-8_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-824
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_2; Positions   25018   25841.
XX
SQ   Sequence 824 BP; 221 A; 154 C; 179 G; 270 T; 0 other;
     tgtagcataa ttgcctattt taacaattaa atattttcta taagtaattt gcgttattta        60
     tttcgaactt attctttcga taaaatgaac tttcgggcgt accgacgggg gtgcgcaact       120
     ctcacttgtg ttctgtcaat tgtcgatact ggagaacaaa ggaatcgagt ttggtagcgt       180
     gaggacgcag aaaaaattag gtgagttgat ctcacagagt atttatcgtt aataattaat       240
     cttaagtaca attgatcaat ctagacttcc taattacgtg ataatatagg ttataacgct       300
     tttcaatgtc ttggtcttgc cacgtggttg tgatgagagt gaggttaggc tgggctggct       360
     ctccgccctt cctattgcac aaacctcgac tctgtaaata gaattgatgt gactggttgg       420
     ctctccacca ggtcttagtg atatttggcc ttccagccga tttctccgtg gtactccggg       480
     agtaatcata tggcttggcg cagcacctct tggctctcca gagtgctggg gattgagcat       540
     tgaaagcgct tcagattagc acttttggcc ctccaaagtg cggagtttca atattcaagt       600
     aaactgagta gtactcgaaa ttagagattg taaaatcgtt tggggccaaa cgtactgttt       660
     gtttatctgt tgtcgcatcc ttgacgttaa cataaatact cagaccccat ttttctaatt       720
     tgttacaggt aaagcggagc aatgatggtc tatcaaccgc tgattggtta attaattaag       780
     taaatcaatg tagtaaagtc aatttttgca aagcccgtct taca                        824
//
ID   Gypsy-8_TrNi-I repbase;    DNA;    INV; 5211 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5211
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 213-213 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..4758
FT                 /product="Gypsy-8_TrNi-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MIHNLTMDKRNRSRSSHRRSRVSCERYSRTHRRTRNG
FT                 RSRSDSRIRSRHSRDRSRTRTPRLRRSRNRRTQGCHSRSNSRRRSPHIRRS
FT                 SGRDRGHGYVPRGELASRSVRTPPLSPVVPPPPSNCGSCNAVLARLEALEQ
FT                 SSRVPASEGPTTVGQGTDQIVEAIQSLKSVSTHSYYVSNFDPSIHDVDSWF
FT                 QEVDRAKLVNKWDDRECLSRIGNCLKGDARSWLNEWVSNDRTWSNFKLDFK
FT                 PLCVKKIDSAGILYEVMSSNSDKYQTYAEYARKSLLRLRIVKGLSDDLTTE
FT                 IILRGIVDPHVKATATNANLKPSDLVNYLSTFVKPSKFTAASFRSNAQVNN
FT                 SGKSQGFRKRPIGPAKCFVCGDTGHKQATCPKQAKPSTSKTTNSDPKPNEK
FT                 APNSSLVCSYCKKCGHDIKSCFAKQRIDQQRNKSNVNFCAASSQRNDIVVG
FT                 VIQGIPIDLLIDSGAIGVSLISSSVVKYFTCTKKPINREIKGVGESITQID
FT                 SYVTLTIELEGISLEVDLLIVPSECMNAPIIIGTDVLNRDGVTYVRTKNTQ
FT                 RIVRNSSLVLVSSVESNAQPMINTPLTGDNLVKLKSILDTYSEHMISGTAT
FT                 STVTTGCMHIQLNSSIPVNYRPYKMSYDEKSKVRDIIRDLMSKGIIRESES
FT                 PYSSPILLVKKKDGSDRMCVDFRALNKITVKDRYPLPLIDDHIDRLGKCRY
FT                 FTALDMATGFHQIRIDDESVPYTGFVTPEGHYEYLKMPYGLTNAPIVYQRI
FT                 IASTLRSFIEPGKVLVYIDDCLILSDTIDDGLQTLREVLATLTAAGFSINL
FT                 KKCSFLCTEIEYLGRVISNGEVRPSPSKVKALVNSGPPQNVKQVRQFLGLA
FT                 GYFRKYIPNYSNRMACIARLTRKNVSFSWGPEQERVRQEIIVRLTSAPVLA
FT                 IFDPSLATEVHTDASSLGYGAVLLQVRKDGTKSVVGYYSQATKGAEPKYHS
FT                 YELETLAVVKALKHFRHYLIGSHFTVITDCNALKATQNKKDLVPRVARWWI
FT                 YLQDFNFTISYRKGAMLPHADYLSRNPVNNIDRPRNWAQIAQAGDEETRNM
FT                 IQALERGELDASRYLVRNEVLYYQYSRVGEETRLLCYIPKGQRLSLLRVFH
FT                 DEHSHIGADKTLELILRHFWFPGLRAFVKKYIRHCVTCLAHKRVPRAPLQP
FT                 ISSWPKPDVPFDTLHIDALGPLPVSKGFKHVMLVIDAFSKYCLLTPICSQD
FT                 LEALKHVCQNVISLFGTPRLIISDRGRMFESASFKSWTQSLGISLHHITPE
FT                 MHRSNGQVERYVRTVLNMLRIEVAYKKTEWAEELWRLQLILNLTQQKTTKT
FT                 SALNLLIGHENATPAIRVLVRDVALSPASENRESRREIVRQRTAERLARNQ
FT                 AAMDSQVNRDRRPPRVFQEGDLVFVIKYAQSTGKLDHGMRGPYRVVRVLPH
FT                 GRYELRLVAGSYGKTTFAAAQYMVPWEGEWTPESCAGFFEGKLVPLTNLCD
FT                 TLEEMSWGNVAFWTLWRCLLFMGLVVLFGLLSVWCIHWVYPRPLEAGRLCK
FT                 PISRCEMCAHSVLY"
XX
SQ   Sequence 5211 BP; 1378 A; 1171 C; 1221 G; 1441 T; 0 other;
     tcagaagtgg gataaaagat tcattcccac taatatcctg acttgatttt aacagtttta        60
     tttcaactgc gaatcactta gttgttttat tttgtcgttt ttttttcata ccctcttttg       120
     tttttttttt ctaccgttaa gtttggtgtg tgtgttctct tatttttcat gattcataat       180
     ttgacaatgg ataaacggaa tcgttcccgt tcttcgcacc gccgttcgcg cgtgtcttgt       240
     gaaagatact cgcgtaccca tcgccgtacg cggaatggtc gttcacgaag tgattcgcgt       300
     attcggtcac ggcattctcg tgatcgctcg cgcacacgca ctccgcgtct ccgacgttcg       360
     cggaatcggc gcacgcaagg atgtcactct cgcagcaatt cgcggagacg ctcgccgcac       420
     attaggcgtt ccagtggacg ggaccgcggt cacggttacg taccacgtgg cgagctggcg       480
     tcgcgcagtg tgcgcacgcc gccgctgtcg cctgtggtcc cgccgccacc gagcaattgt       540
     ggatcctgta acgctgtact ggcgcgactg gaggcgctgg aacagagttc tcgtgtgcca       600
     gcttcggaag gaccaaccac agttggacaa ggtaccgatc aaattgtgga ggcaattcaa       660
     tcactgaaat cggtgagtac ccatagttac tatgtctcga actttgaccc cagcattcat       720
     gacgtagatt cttggttcca agaggtcgat agggccaagt tagttaacaa atgggacgat       780
     cgtgaatgcc tttctaggat aggtaattgt ctgaagggag acgccaggtc gtggctcaat       840
     gagtgggtgt ctaatgatcg tacgtggagt aattttaaat tagattttaa acctctatgt       900
     gtaaagaaaa tcgattcggc gggaattttg tatgaagtca tgtcttctaa ctctgataag       960
     tatcaaacgt acgccgagta tgcgcgtaaa tccctgctaa gattacgcat tgttaagggc      1020
     cttagtgacg atttaaccac ggaaattatt ttgagaggca ttgttgaccc gcacgtaaaa      1080
     gcgactgcga ccaatgcaaa cttgaaaccc tctgatctag ttaattattt atccactttt      1140
     gtaaagccat caaaattcac agccgcaagt tttcggtcaa acgcccaggt taataacagc      1200
     ggtaaatcac agggtttcag gaaacgccca ataggtccag ccaaatgttt tgtgtgtggt      1260
     gataccggtc ataagcaggc tacatgccct aagcaggcga agccctctac ttccaaaact      1320
     actaattcgg atccaaagcc aaacgaaaaa gcgcctaatt cttcacttgt ttgctcttac      1380
     tgtaaaaagt gtggtcacga tattaagtca tgttttgcga aacaacgtat tgatcagcag      1440
     cgtaataaaa gtaacgttaa tttctgtgcc gctagctcgc aacgaaatga tattgtcgta      1500
     ggagttatcc agggtattcc aatcgatctt ttaattgaca gtggcgctat aggcgtatct      1560
     ttgatatctt cttcggtggt taaatatttt acatgcacta agaaacccat aaatcgcgag      1620
     ataaagggtg taggcgagtc aattactcaa atagattcat atgtaacatt aacgattgag      1680
     ttggaaggca tctcgttgga ggtagattta ttaattgtgc cgagtgagtg catgaatgca      1740
     cctatcataa taggcacaga tgtgcttaat agggacggtg ttacttacgt ccggaccaaa      1800
     aatacacaac gtattgttcg aaattcaagt cttgtactag tgtctagtgt ggagtcaaac      1860
     gcacaaccaa tgattaatac cccattaact ggggacaatt tagtcaaact aaaaagtatc      1920
     ttagacacat actcggagca catgatttcg ggcactgcga cgtccactgt tacaactggg      1980
     tgcatgcaca ttcaactcaa cagcagtatt ccagtgaact atcgacctta caaaatgtca      2040
     tacgatgaga agtcgaaagt ccgtgacatc atccgggatc ttatgtccaa gggcattatt      2100
     cgcgagtcgg agtctcccta ttccagtcct attctgttgg tcaaaaagaa ggacggctcc      2160
     gaccgcatgt gcgttgactt tcgagctctc aataagataa cggtcaaaga ccgttaccca      2220
     ttacctttaa tcgatgacca cattgatcgc ttgggtaagt gtcgctattt cactgcgctt      2280
     gatatggcta cagggtttca tcaaatccga attgatgatg aatccgtccc ctacaccggt      2340
     ttcgtgacgc ccgaggggca ttacgagtac ttaaaaatgc cctacggcct cactaacgca      2400
     ccaatagtgt accagcgtat aatcgcttcc accttgcgca gttttataga acctggaaag      2460
     gttttggtat acatagacga ctgcttaatc ctttcagaca ctattgatga cggacttcaa      2520
     accttgagag aggttctagc cactttaacc gcggctggtt tctcaatcaa ccttaaaaag      2580
     tgttcgtttt tgtgtaccga aatcgagtac ttgggacgtg ttatatctaa cggggaagtg      2640
     cgtccctcac ctagtaaagt caaggccctt gtaaactctg gtcctccaca aaacgtaaaa      2700
     caagtccgtc aatttttggg attggcgggc tactttcgca aatatatccc caattactcg      2760
     aacaggatgg cttgcatagc acgtttgact cgtaagaatg tttcgttttc ttggggacca      2820
     gagcaagagc gcgtcagaca agagatcatt gttcgtttga ctagcgcacc cgtgttggcc      2880
     atattcgatc caagtttggc cactgaggtg cacactgatg cgagtagctt gggctatggt      2940
     gccgttctgt tgcaagtgcg taaggacggt actaaaagcg tggtcggtta ctacagccag      3000
     gcgaccaagg gtgcagagcc aaagtaccat tcatacgagc tcgagaccct ggctgtggta      3060
     aaggctctaa aacattttag acattattta ataggatctc attttaccgt aattactgat      3120
     tgtaatgctt taaaagctac tcagaataaa aaagacctgg ttccacgtgt ggcaagatgg      3180
     tggatttatc ttcaagattt taattttaca atttcgtata gaaaaggtgc catgttgccg      3240
     catgcggatt acctaagccg taaccctgta aataacattg ataggccgcg taactgggct      3300
     caaatcgctc aagccgggga cgaggaaaca cgcaacatga ttcaggcgtt ggagcgagga      3360
     gaattagacg cttcacgata tctagtacga aatgaggtgc tttattatca gtacagtcgt      3420
     gttggagagg agacgcgact tctttgctat ataccgaagg gacaacgcct gagtctcttg      3480
     cgtgtattcc acgatgaaca tagccatata ggtgccgata aaaccttaga attaatactg      3540
     agacatttct ggtttcccgg acttagggca tttgttaaaa agtacattcg tcactgtgta      3600
     acttgtttag cgcataaacg agtccctcgc gcgccacttc aacctatttc ctcttggcct      3660
     aaacctgatg tcccatttga cactctccat attgatgcac ttggccctct gcctgtatct      3720
     aagggcttca aacatgtaat gctggtcatt gatgcgttca gtaaatattg cttacttacg      3780
     cctatttgct cccaagattt agaagcactg aaacatgtct gtcagaatgt catatcattg      3840
     ttcggtactc ctcgtctgat aatatccgac agaggccgaa tgtttgagtc cgcaagcttt      3900
     aagtcgtgga cgcaatctct aggcatttca cttcaccata taacacccga gatgcaccgc      3960
     tccaatggac aagtggagcg atatgttcgc accgtcttga atatgctgag gatcgaagta      4020
     gcttacaaaa aaactgaatg ggctgaggag ttgtggcgtc ttcaactaat ccttaatctg      4080
     acacaacaaa agaccacaaa aacttcggct ctgaacctct taatcggcca tgagaacgct      4140
     acaccagcaa ttcgagtcct tgtgcgagat gtcgcactta gtcctgcctc agaaaatcgt      4200
     gaatcgagaa gagagatcgt cagacaaagg acggccgaac ggctagctag aaaccaagcg      4260
     gccatggact ctcaagttaa ccgggatagg cgtccccctc gtgtgtttca ggaaggagac      4320
     ctggtctttg taatcaagta tgcccagtcc acggggaagc ttgatcatgg catgcgcggg      4380
     ccctatagag tggttcgtgt tttgcctcat gggcgctacg agttgcgcct ggtggccggt      4440
     tcctatggca aaacaacctt tgccgctgcg cagtacatgg tgccttggga aggcgagtgg      4500
     acacctgagt cgtgtgctgg tttcttcgag ggtaagctgg tgccgttgac caacttgtgt      4560
     gatacccttg aagagatgtc ctggggcaat gttgcctttt ggactctatg gagatgccta      4620
     ctattcatgg gattagtagt gttgtttggc cttttgtcgg tgtggtgcat ccattgggtg      4680
     tacccacgac ctctggaagc tggtcggctt tgcaaaccga tcagtcgctg tgagatgtgc      4740
     gctcatagcg ttctttatta agcatgctag tcatagttat tttcagttat tttagtacct      4800
     aagttgtctg aacgttggtg tttactagag ctggagttat ttatttacaa actacaagta      4860
     aagatgatta actgggctac taaataacga cgttcaaacc ctctaattct attggttatt      4920
     ctaacactaa cacgaattaa cccgcatgag aacaacatgg gctggtgccc ttgatggtta      4980
     gtaatagatt tacttcatcc acagacaatg acaatgatga tggtgatagt ttagttgaag      5040
     accagctact ccagttagag tcgcctacac cagaaccagt accagggccc tcatcaagac      5100
     cagatcacct ggaaccagag gcttctcgag gacttgacat gcccgatctg aattaaagcc      5160
     tggcaccttc tggtttacct gacgaggacg tcaggatgtc aggaaaggcc g               5211
//
ID   Gypsy-8_TrNi-LTR repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-314
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 253-253 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 314 BP; 80 A; 48 C; 63 G; 123 T; 0 other;
     tgttggacat ttcttgggtt aagagtgggg taggatgaca gtttctatat aagcggctga        60
     ataccggcgg ctcgccccta ttcagctgcc atccgtcgtg cgagatagac gtaaggttat       120
     agtttaggtt ctgtcatttc ttttataaag caaaggtaca tcattatttc agttcgttat       180
     tattttgtgt taatcgtgtg caaataagta tttgtctcat ttatttttga tgattgttta       240
     cataattgta attttagttt taaggtaata aatcgtgctt tttaaaaaac tctacccgct       300
     tctgatttct aaca                                                         314
//
ID   Gypsy-8_TrVa-I repbase;    DNA;    INV; 5372 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5372
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 254-254 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..5175
FT                 /product="Gypsy-8_TrVa-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MSNTENTSGAVTSVQSNVTLNFQPNVQPLHIEGVSNV
FT                 SQKWNSWFRQFKLNINALKLTSDDDQQKVSLLLALIGPEGLNVFDSFNKDP
FT                 ENISFKDLELLFQSHFNPKRNVTFERHKFLSRKQNPNETIEEYVTCLKNLS
FT                 LSCELNELRESLVKDVLICGLDSRFVTIKEKLLQESDLNLEKAIELCKSLQ
FT                 LSQQQVQSIQNGVGNSSSNVNAVSNSSSYNSQSQSHRPSRSRQMSHSRNRS
FT                 HSSHYSHSRNHSKSKQSHSKNFHRPKNNSSWRNRSNSPSRSYKSQTHSNSQ
FT                 NLCRNCGQVHRFKCPAANRECFNCHKYGHFSQYCQSQTVRSVQFESPRQDR
FT                 EDDNYFVCNLRSENSLRNSWMVNVFINKRPVSMQIDTAADVNCLSSLIFDE
FT                 LGLSREIIKPSISSVFSYCGNRIDVLGTAMLRCQINNSDNLLRFYIVNHPS
FT                 RAVLSLQDCVKLNLVKRVFANNESNGSGNDESTSNFNKKSTKIANPECKML
FT                 VTKYQSVFEGLGCVSTKCTLHLKQDCEPVIDPPRRLPYKLHKRVKTELQRM
FT                 INDKVIAEVTEPTEWVSSLVVTTKKKNKLRICIDPRNLNKALKRSHFQLPT
FT                 IEDLRSDLEGSKVFSTLDANSGFWMIPLKEECTKLLTFQTPFGRFKFLRLP
FT                 FGIKVAPELFHSIMVKSFGDLPGVKIYLDDLLIHAENEEIHNQRLEAVLKR
FT                 AQELNIKFNVDKCVFSSSQIDYMGHIFSANGIQPDKNRIKAIANMKPPTDK
FT                 KGLQRFLGLVNYLASFIPNLSAESNCLRQLIKKDVEWTWNESHQQTFENLK
FT                 TLVTKSPVLTHFNVNEPILVSVDASKSAVGAVLLQKNKPVCFASKTLTSSQ
FT                 QNYAQIEKELYAIVFACTKFRQYIYGQENVTIETDHSPLVTLHKKPLASVP
FT                 ARLQRMFLQIQPYDLNIVYKPGKYMYVADTLSRSPLPETDNLLDDEIAVHV
FT                 NLINSALAVSPDTLSKIQEEAQNDEEIRLLKQYCSNGWPQNKSQVADVVKS
FT                 YWSCQEDITVNDGFVFKGNAIIIPIKLRKYVLSLVHSSHMGLERTKNHVRG
FT                 VLFWPCMSADITNLINQCSTCSKFRRNNSKMPLQSHDIPSLPFQKIGADFL
FT                 SFEGKSYIVVVDYFSKYIELISLNSTKTPSVVMSLKSIFCRHGIPCEMVTD
FT                 NGPPFNGEDFGNFCKQWQIHHNLSSPFYPQSNGQAESAVKIVKNMLQKCKD
FT                 SGTDPYLALIHLNNTPKEKSASPAQLLMSRRLRCTIPINKSLLRPKSVHFR
FT                 SHTKTLKDIQSKSKYYHDRNAKPLPDLYVSEDVYFKLKPNEPWINGKIVRL
FT                 AGFRSYIIEKDGKFYRRNRIHILKRSPIIRNTSQAMPTTANQVIPTTSSQA
FT                 KSTSSSPIVNRKSFPLLSLNSTLSVTSRTNSSYVHPSDNASQPMSSPPHLS
FT                 SSDSIQSSSTSTPINQSIVNSSPTSTSSFYATPTNQNSSSDDSCQILSDDP
FT                 EVQELVTFYKDSSPSVGSHPGTSSSRNKLPTQGRGRASILKNMQVSSKGRV
FT                 IKPPLKFAEEFT"
XX
SQ   Sequence 5372 BP; 1736 A; 1082 C; 931 G; 1621 T; 2 other;
     tggtgtcagg tcggggtaat ttgttttaaa caaattttcg gttctcacgg acaatttttt        60
     ttgttctcgt ttcgtcgtat cgtcaaattg cgtcgtatta aaagagattc gcgtcggata       120
     ccgcgtaacg ctttcgtcag tcatgtcttc caaaaccgcg tgccgtataa ttttaacccg       180
     tataatttta acattttaac aaatcctgta caattgtttt aaattatcaa tcgtaaatta       240
     gttcgtttta aatgatttta aagtctcgtc gtgtctttta tgaatctcaa ctatgtattg       300
     ctgcctacga ttctagtcta acctgttgct gcccatgatc gtctttgtct ttgtctgtgg       360
     tccatgccgt cctatcaatt gagtatgtct agtcaccgaa tcttcaaatg tctaatctag       420
     tcaaatgtct tcatcctgtc atcttkccgt cgtcttcgtc atccacaacc gtcgtaatta       480
     agtacaacat tttatcttcc tatgtcaatc ctttgtatgt atgtcgtatg tatctcgtac       540
     tcaggtcagt ctcaagtcat cctcaagtga ttcgtcttac tgtcttcaaa tatgtcgaat       600
     acagaaaata cctcaggagc agttacttca gtacaatcca atgttacttt gaattttcag       660
     ccgaatgtac aacccttgca catagaaggc gtgtccaacg ttagtcaaaa atggaattca       720
     tggttccgac aatttaagtt gaacatcaat gcgctaaaac ttactagcga tgatgaccaa       780
     caaaaagttt ctctgcttct agcactcatt ggtccggagg gtttgaacgt ttttgattct       840
     tttaacaagg atcctgaaaa tatctcattt aaagatctag aattgttgtt tcaaagtcac       900
     tttaacccga agcgaaatgt aacttttgag cgccacaagt tcctatctag aaaacaaaac       960
     ccgaacgaga caatagaaga atatgtaact tgtctgaaaa acctgagcct gtcatgcgaa      1020
     ttgaatgagt tacgagaaag tttagtgaag gatgtcctca tttgtggtct cgacagtcgt      1080
     ttcgtcacca taaaagaaaa attgttgcag gagtctgatt taaatctgga aaaagctatt      1140
     gaactttgta aatccttgca actatctcaa cagcaagtcc aatctattca aaatggagtc      1200
     ggtaacagta gtagcaatgt aaatgcagtc agtaattctt cttcttacaa tagtcagtca      1260
     caaagtcata gacctagtag atcaagacaa atgtctcaca gtagaaatag gtctcactct      1320
     tctcattatt cacattctag gaatcattcc aagtcaaaac agtctcattc taaaaacttt      1380
     catcgtccta aaaacaactc atcgtggaga aatcgatcga attcaccatc gcgcagttac      1440
     aaaagtcaaa cacattccaa ttctcaaaac ttatgtcgaa actgtggtca agtccatcga      1500
     ttcaaatgtc cagccgcgaa tagagaatgt tttaattgtc ataaatatgg tcatttttcc      1560
     caatactgtc aatcacaaac ggtcagaagc gtccaatttg agtcaccaag gcaagatagg      1620
     gaggatgaca actactttgt ctgtaattta agatcagaaa attccttaag gaactcttgg      1680
     atggtaaatg tttttattaa taaacgtcct gtcagtatgc aaatagatac agctgcagat      1740
     gtaaattgtc tgagcagtct aatatttgat gaactgggtc tcagtcggga gatcatcaaa      1800
     ccatcaatca gttctgtttt ttcatactgc ggaaatagaa ttgatgttct cggaactgcc      1860
     atgctacggt gtcaaatcaa taattctgat aatttactcc gtttctacat agtaaatcat      1920
     ccgtcgagag ctgtcttaag tcttcaagat tgtgtcaaac taaatctagt caaacgtgta      1980
     ttcgcaaata acgaatcaaa cggtagtggc aatgatgagt caacttcaaa ctttaataaa      2040
     aaatccacga agattgccaa tcctgaatgt aaaatgcttg ttaccaaata ccagtctgta      2100
     tttgaaggtc tagggtgtgt ttcaacgaag tgtacactac atttaaagca agattgtgag      2160
     ccagtcattg atcctcctcg ccggttgccg tacaagttgc ataaacgagt caaaactgag      2220
     ttacagcgaa tgataaatga taaagtcatt gcagaagtca cagagccgac tgaatgggta      2280
     agttcattgg tagtcaccac caaaaagaaa aacaagttac gaatttgcat tgatcctcgt      2340
     aacctaaata aagccctgaa acggtcacat tttcagttac ctacgattga agatctacga      2400
     tcagatttgg aaggttcaaa agtgttttca actctagatg ctaattctgg gttttggatg      2460
     attccactaa aagaagaatg tacgaagctt ctaacttttc aaactccttt tggtcgtttc      2520
     aaatttctaa gattaccatt tggtattaaa gtcgctcctg aactttttca ctctattatg      2580
     gtaaaaagtt ttggtgatct gccgggtgtc aaaatatacc tkgacgatct cttaatccat      2640
     gctgaaaatg aagagattca caatcaacgc cttgaagctg tcctaaagag ggcccaggaa      2700
     ttaaatataa aatttaacgt cgataaatgt gttttcagta gtagtcaaat cgactacatg      2760
     ggacacattt tttcagcaaa tgggatacaa cccgacaaaa atcgcattaa agcaatagca      2820
     aacatgaagc cacctactga caaaaaagga ttgcaacgat ttttaggttt ggtcaactac      2880
     ctcgcaagct tcatcccaaa tctgtctgca gagtcgaact gtcttcgtca actaattaaa      2940
     aaagatgtcg aatggacgtg gaatgaatca catcagcaaa catttgaaaa tctcaaaact      3000
     cttgtcacaa aatcaccagt gcttacacat ttcaatgtca acgaaccaat tcttgtctca      3060
     gtcgatgctt caaaatcagc tgtgggagct gtgctcttgc agaaaaacaa gcctgtctgt      3120
     tttgcttcca aaactcttac gtcatcacaa caaaattatg ctcaaataga gaaagagcta      3180
     tatgccatcg tcttcgcatg tactaagttt agacagtata tatacggtca ggaaaatgtc      3240
     actattgaaa ctgaccattc acctttagtt acgcttcaca agaaaccgct tgcgtctgtt      3300
     ccagctcgtc tacaaaggat gtttttgcaa attcaaccat acgatttaaa cattgtctac      3360
     aagcctggta aatacatgta tgtcgcagac acactgtccc gttcaccttt accggagaca      3420
     gacaatctct tagatgatga aattgctgtt catgtcaatt taattaatag tgcccttgca      3480
     gtatctcccg atactttgtc gaaaattcaa gaagaagctc agaatgacga agaaatacgc      3540
     cttctcaaac aatattgctc taatggttgg ccgcagaaca agtcacaagt tgcagatgtc      3600
     gtcaagtctt attggagttg ccaagaagat atcacagtca atgatggttt tgtctttaaa      3660
     ggtaatgcaa tcattattcc tattaaactt agaaaatatg tgttatcatt agtgcattct      3720
     agtcatatgg gtctggaaag aacaaaaaat catgttagag gtgtcctgtt ttggccatgc      3780
     atgtctgccg atattaccaa tctaattaac caatgctcaa cttgctctaa gtttcgaaga      3840
     aataattcca aaatgccctt gcagtcgcat gatattccta gtttgccgtt tcaaaaaatt      3900
     ggtgctgatt tcctaagttt tgaaggtaaa agttacatag tcgtcgtcga ttacttctca      3960
     aaatatatag agttaatctc tctaaattct accaaaacgc catcagttgt catgagtctg      4020
     aaaagcattt tttgtcgaca tggaatcccg tgcgaaatgg ttacggataa tggtccaccc      4080
     ttcaacggag aagactttgg gaatttctgt aaacagtggc aaatacatca taatctgtca      4140
     agtccttttt atcctcaatc taatggtcaa gccgaaagtg ctgttaaaat tgtaaaaaat      4200
     atgcttcaga aatgtaaaga ctcgggtaca gatccgtatc ttgctcttat tcacctaaat      4260
     aacacgccaa aggaaaagtc tgcatcgccc gcacaattgt taatgtcacg aagattaagg      4320
     tgtacgatac caataaacaa aagcctatta agaccaaaat ctgtgcattt cagaagtcat      4380
     acgaaaactc taaaggatat acagtcaaag tcaaagtatt atcatgatcg aaatgctaaa      4440
     ccgcttccag atttgtatgt ctcggaagat gtttacttca agttgaagcc aaatgaacca      4500
     tggattaatg gtaaaattgt tcgccttgct gggtttcgat cttatatcat cgaaaaagat      4560
     ggaaagttct acagacgaaa cagaattcac atactcaaaa gaagtccaat catcaggaat      4620
     acaagtcaag ccatgccaac aactgcaaac caagtcattc caacaacttc tagtcaagcc      4680
     aagtctacga gttcgtcgcc aattgtcaac aggaaatcgt ttccattatt atcattgaac      4740
     tctacattaa gtgtcactag ccgaaccaac tcttcttatg tccatccgtc agacaatgcg      4800
     tctcagccaa tgtcaagtcc accacatttg tcatcatcgg actcaatcca aagttcgtcc      4860
     acctcaacac cgatcaacca gtccatcgtg aactcatctc caacaagtac tagttcattc      4920
     tacgctactc ccacaaatca aaattcttcg tcagatgatt cgtgtcaaat tctttcagac      4980
     gatccggaag tccaagagct tgtcacgttt tataaagatt caagtccttc cgttgggtct      5040
     catcctggta cttcttcaag cagaaataaa ttaccaacac aaggtcgagg cagagcctca      5100
     attttaaaga atatgcaagt gtcgtccaaa ggacgagtga tcaaaccacc gctaaagttt      5160
     gcggaggaat tcacttaaaa cttgtcattt taattgtaat gtaatgcaat catttttttt      5220
     ttaaaaaacg aaattgtttt atcataattg ttttatcata attgttttat cgtaattgtt      5280
     aatatcaaaa gattaatttt gatctcaaga aattttaatg ttgttgttag ttaattttta      5340
     agaaaaaaaa aaaaaaaaaa aaaaagaaag cg                                    5372
//
ID   Gypsy-8_TrVa-LTR repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-8_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-169
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 237-237 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 169 BP; 41 A; 46 C; 22 G; 60 T; 0 other;
     tgttacagat gctaacatca tctttgatca ttacggtcat tatgtaatct ttggcctcct        60
     aggcacactg tcacttgtat gattattcaa tatacgcgcg cccgttcgtc cctacaacaa       120
     tgtcgtctga ttctctttta accatctctt ttatccaatc cccataaca                   169
//
ID   Gypsy-90_AA-I repbase;    DNA;    INV; 7220 BP.
XX
AC   supercont1.249;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-90_AA_;
KW   Gypsy-90_AA-LTR; Gypsy-90_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7220
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.249; Positions  152520  159739.
XX
CC   Positions [3537-4082] - Reverse transcriptase
CC   Positions [5169-5645] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3234..6023
FT                 /product="Gypsy-90_AA-I_3p"
FT                 /translation="MDFWQKFQIWPTVKDCAMIEANIPPIPESQQDSFTES
FT                 ELQQLVEVRKLFVGAQPDKLTITPLIEHRIEISEEWRGKPPVRQYPYTLSP
FT                 KVQQKVAEELERMLSIGIIERANSDWCSNVVPVIKPTGKVRLYLDARKINE
FT                 RTVRDAYPLPHPGRILGQLPRAKYLSTIDLSEAFLQIPLEKASRKYTAFSI
FT                 QGKGMFQFTRLPFGLVNSPATLSRLMDRVLGHGELEPNVFVYLDDIVIVSE
FT                 TFEHHVQLLREVAKRLTEANLSINIDKSKFGVSELPFLGYLLSTEGLRANP
FT                 EKVRAIVNYERPTTVTKLRRFLGMANYYRRFIEDFSGITSPLTDLLKTKSK
FT                 VLGWSEAAENSFNLIKEKLISAPVLACPDFTEEFTLQTDASDVAVAGILTQ
FT                 IQDGFERVIAFFSHKLTTPQRNYHACEKEALAVLLSIEAFRGYIEGSHFTV
FT                 ITDSAALTHIMSAKWKTASRCSRWCLELQHHDMTIRHRRGKENVVADALSR
FT                 SVATLDAKTNSDTPLVSPAISNTNPNPTDSALTTYEDLLEKVSEHPDEHVD
FT                 FQLRDGVLYKYVANTSEPHDDRFEWKIVPHPNERTDIIFECHDNSMHPGVD
FT                 RTLSRIRLRYFWPRMVLDVREYVGKCTTCKETKAPNIALAPPMGERRITSH
FT                 PWQIIALDFIGPLPRSRTQNQYILSVVDLFSKWIMLIPFRKIDSKNLCKAL
FT                 RDQWFYRNSVPEVLITDNASCFLSHEFRSLCSRFDIRHWLNSKYHSQANPV
FT                 ERVNRTVNAAIRTYVKSDQKLWDTRLSEVEAVLNTSEHSATNFTPFFATHG
FT                 HEMFLKGSDHCFGADDPQISHAERGKNQAELFGDIKNLIQEKLEKAHQESL
FT                 KRYDLRHRAYGKLLQAGQMVYRRNMKQSSALDDYNAKYGPQYLPSKVIRRI
FT                 GSSSYEIADLDGKSVGVWPAIHLKPA"
FT   CDS           join(412..1557,1561..2844)
FT                 /product="Gypsy-90_AA-I_1p"
FT                 /translation="MAVSNQKLVVMKLKQMFYDIRVDHLAEDELDFELEVR
FT                 KIVFNDNEAIARKRRALREALKAEKTVENPFLVLKRDPAGEFKVCVDKFTE
FT                 IDGSIRVSAKAVPPRYESRLLHLGTRLILLENHLSTEEKIEVTRMQEAVLA
FT                 RLNEYFYDKRAVAQVEQEDAGIDRLFDEIENPVGQASEIGPTGLPPITPVV
FT                 QSEGSSLPGDDADILESLRRLGLMKGDLQQVESIDVKEALLSLEHEIYLLR
FT                 KFKELHSTLPASSVASVTQAATFTQPIHTTYTGTIPKQSVPVVVTTVWNPP
FT                 IGSIPPVCSHATIPGLSNPYFQSLTNSQYSWSNYVPPNTQPNYSTAMTGAP
FT                 GYRPDVSVAYPMINFLTQTTTASSIPRITTSVYPNYCVPSHISYASPSNSC
FT                 SNTAPTTLYERGQTNQVITSGVDPWRLPIPSGGSSNPLLGSVSNPLIIPSS
FT                 GNTYVPQTVPGWPLSGPAIPSHQQAGVADPPRSHYGHKSLPVSKWKLEKYA
FT                 GTDQGLKLNEFLVLVSQLALSERTSEAELFDSAFHLFTGPALNWYMTMRSS
FT                 GRLVSWSHLVTELRKTFAHPELDSLVRTRVYQRRQQRNETFQEYYYDMESM
FT                 FRSMIVPMSDHEQLDILKRNMRADYKKTLLWKPIHSLPDLLEAGHMIDASN
FT                 FSLYAKVFGNEKSANAISETRTDRGESKGQNHRPPYKQGQYQNTKFNPKST
FT                 ESNLKKKSDQDNKKPTLTTQAGQSKEPDPKEGPSKPTRTLEMLIESHRPPR
FT                 SYECLYCRQTNHSLEQCRNYRGSLCMVCGFKGFETQNCPYCQKNGLQTVQK
FT                 RRPSSPSA"
XX
SQ   Sequence 7220 BP; 2168 A; 1573 C; 1596 G; 1883 T; 0 other;
     attggcgatc caactaaaaa aaatatcctt gttccagaac atttttctgc ttgctccggg        60
     agactcacga ttgttccttc gttcatcgtg attgtttcgt tgtgtttcgt cgaaatagat       120
     gctaaaaggt aagatttact atctgtttga tccattttca taaatcaaac caattatata       180
     tgctacattt tagattatcg ggtttatttt ccatagttgt actatttttc tattgaattg       240
     aattgattag gttaaacaag tgaattgaat tagaatttaa gaatcgaatt gaattgaaat       300
     ttaggattaa ttgaattgaa tttgaattta ggattaagta aattgaattg agaagtgaat       360
     ttatgctatt gctaaggatt tgagattaaa aatttggaaa agaaactgaa gatggcggtc       420
     agtaatcaga agttagtagt gatgaagctg aagcagatgt tttacgacat tagggtggat       480
     cacttagccg aagacgagtt agattttgaa ctggaagtga ggaaaattgt tttcaacgat       540
     aatgaggcta ttgctaggaa aagaagggct cttagagaag ctttgaaagc ggaaaagaca       600
     gttgagaatc cttttttggt tttgaaacgc gaccctgccg gagaatttaa agtttgtgtg       660
     gacaaattca cggaaataga cggttctatt agagtttcgg ccaaagcagt gccacccagg       720
     tatgaatcga ggttgttgca tctaggaact cgattgatcc ttctagaaaa tcatttatcg       780
     acggaagaga agattgaggt taccagaatg caggaagcag tcctggctcg actgaatgaa       840
     tatttttatg ataagcgagc agtagcacag gttgaacaag aggatgcagg gattgataga       900
     ttgtttgatg agattgaaaa tccagttggt caagcgtcag agataggccc cactggacta       960
     ccaccgatca caccagtagt acagagcgag ggaagctcac tgcctggtga cgatgcggat      1020
     attttggagt ccttacgaag attgggatta atgaaagggg atttgcaaca agtggagtcg      1080
     atagatgtca aagaagctct gttgtcacta gaacacgaaa tttacttgtt gagaaagttt      1140
     aaggaactac attccacgct tccagccagt tccgttgcta gtgtgaccca agcagctact      1200
     ttcacacagc cgattcacac gacttatacg ggtacaatcc ctaagcaatc ggtgccagta      1260
     gtagtaacca ctgtctggaa tccaccgata gggtcaattc ctcccgtgtg tagtcatgca      1320
     accattcctg gtctttcgaa tccctatttt cagtctctaa ccaacagcca atactcatgg      1380
     tcaaattatg tcccacctaa tacgcaaccg aattattcga cagctatgac aggtgctcct      1440
     ggataccgcc cagatgtttc agttgcgtat ccgatgatca attttctcac acagactacg      1500
     acggccagtt cgattccacg tatcacaacc tccgtgtatc ctaattattg cgtgccgtag      1560
     tcacacatat cttatgcttc accgagcaat tcttgttcga ataccgctcc tactacactg      1620
     tatgagagag gacaaacgaa tcaagtcata acctcgggcg tcgacccgtg gagattaccg      1680
     ataccgtcag gagggagttc caatcctctg ttaggatcag tctcaaaccc tttgattata      1740
     ccgagctctg ggaacactta cgttcctcag actgtcccgg gttggccatt atcaggccca      1800
     gcaataccgt cgcatcagca ggcaggtgtt gcagatcctc ctcgcagtca ttacggccac      1860
     aaatcgttgc ccgtatcaaa atggaagcta gaaaagtacg ccggaactga tcaaggactc      1920
     aaactgaatg agttccttgt tctggtgtcc cagttggcac tttcggaaag aacttcggag      1980
     gccgagcttt ttgattctgc ttttcatctg ttcacagggc cagctctgaa ctggtacatg      2040
     acgatgcgct cttcgggacg tcttgtcagc tggtcacacc tggtcactga gctccgtaaa      2100
     acgtttgccc accctgagct tgattcgctg gttcgcacta gggtttacca aaggcgtcag      2160
     caaaggaatg aaacatttca agaatactac tacgacatgg agagcatgtt tcgatcaatg      2220
     attgttccca tgagcgacca cgaacagctc gatatcctga aaaggaatat gcgagcagac      2280
     tataagaaaa cgcttctttg gaagccgata catagtctac cagatctgct cgaagccggt      2340
     cacatgattg acgcttcgaa tttctcgtta tacgcgaaag ttttcggtaa tgagaaatca      2400
     gcgaatgcta tttcggaaac gaggactgac cgaggcgaat cgaagggtca aaatcataga      2460
     cctccttata aacaaggtca gtatcagaac acaaagttca atccaaaatc aactgaatca      2520
     aacctaaaga agaaaagcga tcaggataac aagaaaccaa ctctgactac acaagccggt      2580
     cagtcaaaag aaccagatcc aaaagagggt ccctccaaac ccacgaggac gttagaaatg      2640
     ctcatcgaaa gccatagacc tcctcggagc tacgagtgtt tgtactgccg acaaaccaat      2700
     cattccttag agcagtgtag gaattacagg ggttccctgt gcatggtctg cggttttaaa      2760
     gggtttgaaa cccagaactg tccttactgc caaaaaaacg gcttgcagac ggtccaaaag      2820
     cgccgaccgt caagcccaag cgcgtaaatc ctgtccctac agggattacc cttgccgaat      2880
     tttgggaacc agttcgggaa gagttttatt cgagtgatga gtcccaggtt ctcaacattt      2940
     gtattggaga cacgcacgac aaccgacctt acgcgaaaat taaaatctat ggccgaccct      3000
     ccaaaggtct cttagattct gggagtcagc tcactttaat tagcgagcat gtgttccaca      3060
     agctaaatgg acaaaaactg cgtccagtca gacaacctgt agtggtgcga tccgcgaatg      3120
     ggtctgagct agaggttctg ggccaactct cgatcccttt caattttgga gggtgtataa      3180
     agataattcc caccctcgtg gtgaaaactc tttccgcaga atgcatacta ggtatggatt      3240
     tctggcagaa gtttcagatc tggcccactg ttaaggactg tgcaatgatt gaagccaata      3300
     tcccaccaat acctgagtct cagcaagatt cttttacaga atctgagcta cagcagcttg      3360
     ttgaggttag gaaactattc gtaggtgccc aaccagataa gctaacaatt acacctctaa      3420
     ttgagcaccg aatagagatt tccgaggaat ggagaggcaa acctccggtc cgccaatatc      3480
     catatactct atctccaaag gtgcaacaaa aagtggcaga agaattggag agaatgctat      3540
     cgattggtat tattgagaga gctaactccg actggtgctc caatgtagtg ccggttataa      3600
     aaccaaccgg aaaggttcgt ctctacctag acgctcgcaa aataaacgaa aggactgtac      3660
     gtgacgcata tcccttgccc catcctggcc ggatactcgg tcagttgccc agggccaagt      3720
     acctgagtac catagattta tcggaagcgt ttctccaaat cccattggag aaagcttcca      3780
     gaaaatatac agcgtttagt attcagggca agggaatgtt ccaattcacc aggttgccgt      3840
     tcggattagt gaatagtcca gcaaccctgt ccagactcat ggatagagtc ctcggacatg      3900
     gtgaattgga accgaacgtc ttcgtatacc ttgacgatat tgtcattgta tcggagacgt      3960
     tcgaacatca cgtgcagctc cttcgtgaag tggcgaaacg tctgacagaa gcgaatcttt      4020
     ccattaatat cgacaaatct aagttcggcg ttagtgaatt gccgttccta ggataccttt      4080
     tgtcaacaga gggtctaaga gctaaccccg aaaaggttag agccattgta aactacgaac      4140
     gacctacaac ggtcacgaaa ttacgaaggt tcctaggaat ggcgaattac tatcgccgtt      4200
     tcatagagga cttcagcggt atcacgtcac ctttgacaga cctgctaaaa acaaaatcga      4260
     aggtgttagg atggagtgag gcagctgaga attcgttcaa cctaattaag gagaaactga      4320
     tctcggcccc agtccttgcc tgtcctgatt tcaccgagga attcacactg caaaccgacg      4380
     caagcgacgt tgcagtcgcg gggatcctaa cccagatcca agatggattt gaaagggtga      4440
     ttgccttctt ttcgcacaag ctgacaactc cacaacggaa ttatcatgct tgcgaaaagg      4500
     aagcgcttgc cgtgctattg tccattgaag cctttcgagg atacatagag ggatcccatt      4560
     ttacggttat taccgactcc gccgcactaa cgcatatcat gagcgcgaaa tggaaaacag      4620
     catctcggtg tagccgctgg tgcctcgagt tacagcatca cgatatgacg atacgccatc      4680
     gtcgagggaa agaaaacgta gttgccgatg ccctctcgcg aagcgtagcc actctggatg      4740
     ctaagactaa ttcagacaca ccactggttt cccccgctat cagcaacacg aacccaaacc      4800
     ctactgactc ggctttgacc acttatgagg atcttttgga gaaagtctcc gaacatccag      4860
     acgaacatgt tgattttcaa cttcgcgatg gtgttttata caaatacgtg gctaacacca      4920
     gtgaaccaca tgacgaccga tttgagtgga aaattgtgcc tcatcccaac gaacgcactg      4980
     acataatttt cgaatgccat gataattcaa tgcatccagg ggttgatcga accctgagcc      5040
     ggatccgttt gcgatatttc tggccaagga tggtcctaga cgttcgtgag tatgtaggta      5100
     aatgtacgac ctgcaaagaa actaaggccc ctaatatagc ccttgcacca ccaatggggg      5160
     agagacgtat cacgtctcac ccttggcaga tcatcgcctt ggacttcata gggccattgc      5220
     ccagaagtcg gacccaaaat cagtacatat tgtccgttgt cgacctgttc agcaaatgga      5280
     taatgctgat tccttttcgc aaaatagata gcaagaatct atgcaaagcc ttacgagatc      5340
     agtggtttta ccgtaattca gtacccgaag tactaattac ggataatgcc tcctgttttt      5400
     tgtcccatga gtttcgttca ctttgtagta gattcgatat tcggcattgg ctgaattcta      5460
     aatatcactc acaggcaaac cctgtagagc gagtaaatag aacagtcaat gccgctattc      5520
     gaacctatgt aaaaagtgat caaaaacttt gggatacccg attgtccgag gtggaagctg      5580
     tcttgaacac ttcagaacac tcagccacaa atttcacccc gttcttcgca actcatggac      5640
     acgaaatgtt tttgaaagga tcggaccact gtttcggtgc tgatgatccg caaatatcgc      5700
     acgctgagcg tgggaagaat caagccgaat tgttcggcga catcaaaaat ttgatccagg      5760
     aaaagcttga aaaagcccac caagaaagcc tcaagcgcta cgatctgcgt catcgcgcct      5820
     atggaaaact attacaggcc ggacaaatgg tttatagacg aaacatgaag cagtctagtg      5880
     ccttagacga ctataatgcc aaatacgggc cacaatatct accgtcaaag gtaatacgaa      5940
     gaataggatc ttcatcttac gaaatcgctg atttggatgg aaaatcagta ggcgtatggc      6000
     cggctatcca tctcaaacca gcatgaaaac tcacgaccaa ctatatgtta tgatggtcat      6060
     tgacctgcta agaactacac gcgaaccaaa tatttacaca gacgttcatt gacctcagct      6120
     tctgtctggg aaggttgatg atcgctagct atgaactcca atcgaatgtt tacaagtcgg      6180
     ccgctgaact ccatctcgtc ccgggaaatt cagcatcagc aacaaacacc tcagtgaccc      6240
     gattttttgc cttcggttct gataattctg gttgagcggg aataatcagc tctccagttc      6300
     atcggtcctg caagcagcaa ttctccatcc tctaagctaa gctcttgtcg aagaaattaa      6360
     ttagcaaaat catttccata ctacgtaaag tttagtcttc tcgtctcaag ctacgatgat      6420
     gctttgaatg aagtttgttt ttatgtcgtt ttgtgttgct ccggttttac aaccgtgcgt      6480
     tcacaaggca aactgtcaac cagtggaatg gttcacatcc ttcccaaaaa aaaaaggaag      6540
     tacgagggac ccgtcgtttt gaataaatcg acgaggtcac agatcaaatt agagggaaaa      6600
     cttcctcttt ctgtgtgaaa gaggagagat ttttgcctac tgctgaaaag ttagaaacaa      6660
     gagttataaa ttaaatagcc tcttcgttgt attagaagag atacgtgttc ttctaatcga      6720
     taatatctat ggagataccg cttgtctcct aggtgattta gatttacatt tattataaga      6780
     catcgtggaa tgaatggtct attggatgat tggtgaatga atgtgttttg agggtaccca      6840
     tatgaatgag agtgtaaatg gaaacaatat aaaaatgaga atgaatgaaa gcaaaataaa      6900
     attgaaaatg aaaatgaaaa gaaaattact agaattaagg aacagaaatt aggaattggt      6960
     aatgttgata attttttttc acagcaacct gaacaatcag tttaatttaa acatacgtac      7020
     aacacggtaa aagtaaattc cactaatcta caaatagata gtatccataa ttgatagtaa      7080
     taaaattaag gatccggaga attgcttact tggggcatac taattcacga ggacttcgtt      7140
     tcgagaaaag atgaatccca gaaaaattac caagctgcaa tttccagcct ggcaattttt      7200
     ctctggggag aagggatgat                                                  7220
//
ID   Gypsy-90_AA-LTR repbase;    DNA;    INV; 1352 BP.
XX
AC   supercont1.249;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-90_AA_;
KW   Gypsy-90_AA-I; Gypsy-90_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.249; Positions  151168  152519.
XX
SQ   Sequence 1352 BP; 383 A; 326 C; 347 G; 296 T; 0 other;
     tgttaccgac caatcgttac caattaaatt acccgcgtta tggagaccaa gaggctgttg        60
     taaacggtag attaggagat aggagttttg tttgattgtg gcattataag aaaaagtaag       120
     ggatattaga taatctagta taaacttctc tttaattata acaacccccc cccccctaac       180
     tactaccctg acatttgaga acgtttcaca tctcgtctga atgattacct gctctacgaa       240
     agtggtaccc ctgagggccc agtcgatact tccggatgag agtaaaagag ggaagagaga       300
     gaggaggaca agagagatgg gaagagaaat tgactggggt agaaggaaag agagaaagta       360
     tccagatgtc aagaaagata gacgtcgaaa tcgaactgga aaagaaaaga ttttcaaaaa       420
     gttttgttcg ggccaaggag ataactcacc cgtcgaaaac gttttggggt ttccctgctg       480
     gatccccgcg gtcgaatcgg caagaagaac tccgaagcag aagtgtcgtc ggacgtagag       540
     gaggattaga tagttcggtg cacggaaagc actaagcgat cgtgggaagc ttgcgcacct       600
     caaggacacg tggatccctg taaccaccct aagaaccatc ggtcggcgag ccgggtgctg       660
     gtgaccaacg agcaacgcca tcgttgagcc acacgccacg ggacgaggta accaaagttt       720
     tggaggtgag ggcggtagtg aggtccggct ggtttacccc gctcactatc gctcaatatc       780
     cgatgtgttg ccgaacccgt cagcgagcac tcaggacgtc gatcaactta ccatctacga       840
     gccagccacc aagaactcag ttgaacgctt tacgtccaga aagaacccac caacgaagaa       900
     ggtaccacgt ggacaacata accaaccttg gaaagccttc aggagaacct ctgggcatgc       960
     aggactacgg agcagcctcg tgtgccaccc aggaccggat ttagctgaca cccaaaggag      1020
     tggcaagtaa aagatgtatg tgtctctctt accctcgcat gaaggccact gggccctaag      1080
     tacctctagt tccggatcgg ccgcaacgaa cccccccccc cccccttttt ctcaatgtaa      1140
     aatccttaag aaataaatat gttaagctta ttctatctgt gtattgtgcc actttattga      1200
     atggaagaca gtcttggttt ccctatcagt ggggttgcct ctatcctgtt tcccgtctac      1260
     cttggtgcca ttgggaaggt aagtgggtcc acccgaagca agcgaacgcc gaccctgagt      1320
     gggtgtagcc gcggggctag ccgtaattaa ca                                    1352
//
ID   Gypsy-90_CQ-I repbase;    DNA;    INV; 8388 BP.
XX
AC   AAWU01007292;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-90_CQ_;
KW   Gypsy-90_CQ-LTR; Gypsy-90_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-8388
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 559-559 (2011).
XX
DR   GenBank; AAWU01007292; Positions   99839   91452.
XX
CC   Positions [5333-5812] - Integrase core
CC   'ACGT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           558..2942
FT                 /product="Gypsy-90_CQ-I_2p"
FT                 /translation="MSFKFPYAKHLLNDEVDYELRVRSLDDALNLDTETKV
FT                 EILQKHYQEDSQEKREYLSIYTIEQDYDFILSRVSSIELALREKKDPKLIS
FT                 RLQYYYLRTKNSQITPQTKEMRDVLVQDICDLMKHVGVQLQPISEEVHQDE
FT                 GAAALPVEQNQSGNLSVNQTAGRNTSVRSNLVVDTVTDLLGDLNGSNQNQH
FT                 NLTFGDFGIDLSPVRVNPSYTGAIPKVPASKRLGIVPSREQLQAEMEQMRK
FT                 DNKELRQTCRDLTDRLQNINLAELRKKAINPQNNSEVPSRQTEPPLNKSSS
FT                 RTNQFPPSAQNQEPPPLPDNRQNPQFSQGLPLPPNPSNQTSQSYQWPRPMK
FT                 WPNPQQNRGVPPPPNETHQLYQWPRSNPQQERGAPPQSSQTPQLYQWPQQE
FT                 QGYRFGLSGQNNRFQPTGQVNSVKGNQTPSQRNQFQQQNAQNNLSQGLTLR
FT                 LHRPPFGNEVSGRHGGYENYDHGDEDDDSEDDGDYCQGNFIPFERTRRRRT
FT                 EQYDRRIEKWNISFSGEPRSTTLEDFIFKVKRLAMMNSISEGSMLSHIHLL
FT                 LRGEASDWFFTYYEEDWDWLTFETKIRFRFGNPNENQSIRQRIADRKQQRG
FT                 EKFSAFLSDIERLNKLLTKPLSERRMFRIIYENMQQRYRSKLLYFNIDSKD
FT                 LLAALCQRIDANDPSLNPINTRHGVNNLEADQPETDSEEELNAIDRRNQRQ
FT                 PENRSWRRDRPAEGYRGNPSQETTRLPLCWNCRQHGHFWRQCQAEKTTFCY
FT                 VCGNAGTVAATCNVHPRRSAPAQAAQTTQGQGNPHPQSGQNPGN"
FT   CDS           2780..6205
FT                 /product="Gypsy-90_CQ-I_1p"
FT                 /translation="MSSRKDYVLLRLWKCRNSCCDLQRPPKKERARTGCSD
FT                 NTRSRKPTPSVWTKSGKLNSECRNGNSSIPTKNKVPSSTPFFDPFQNLLEI
FT                 KIHTNLCPHVKIRVFETEFEALLDSGASVSVTNSRDVADRYGLKIFPSPIR
FT                 ICTADHTQYSCVGYVNMPVTFRNVTKVVAVVIVPEITRSFILGINFWTTFG
FT                 IKPMMQGETGLEEIAEITAGSQDVPEELFHFFIHPVEALPVIEQPPPDDSL
FT                 DIPGIDLPEPSATTPETIKTEHDLTEAERGSLADVIRTFPCTTEGRLGRTA
FT                 LLQHEIVLREDAKPRRMPLYRCSPSIQAEMDKEIERYRQMDAIEECTSEWA
FT                 NPLVPVRKSNGKLRVCLDSRRINAMTKKDSYPMRDMKGIFHRLQSACYFSV
FT                 IDLKDAYFQIPLKEDCRDFTAFRTSKGLFRFKVCPFGLTNAPFTMCRLMDK
FT                 VIGFDLEPHVFVYLDDIVVATKDLSEHLRLLGIVAERLEKANLTISLDKSQ
FT                 FCKKQVNYLGYLLTGQGVAIDSKRIDPILNYSRPKSVKDIRRLLGLAGFYQ
FT                 RFISNYSKIVAPISDLLRKEKNKFQWTEAAEEGFQELKAALVSAPILANPD
FT                 FAEPFVIESDASDNAVGAALIQKLDGEPRIIAYFSKKLSSTQKRYASVEKE
FT                 CLGVLLAIEHFRHYVEGSRFKVVTDARSLLWLFTIGVESGNSKLLRWALKI
FT                 QSYDIELEYRKGKQNITADCLSRSLDAISVAQVDPEYQDLVKQITMDPQAY
FT                 TDFRVVDGSVYKFVKNKGKVEDSRFCWKVYPPKSEREEILRKTHGTAHLGF
FT                 EKTLATLRERYFWPLMNTETKRFCQDCLVCQTSKATNVNTTAPLKVQRKIA
FT                 EYPWQFVTMDYVGPLPASGKGRSTCLLVLTDVFSKFVLVQPFRQATADSLV
FT                 PFVENMLFLLFGVPEVILTDNGTQFTSKLFQDLLSRYHVTHWRTPSYHPQI
FT                 NDSERANRVITTAIRATIKKDHKDWANNIQTIANAIRNSVHDATKYTPYFV
FT                 LFGRNMVSDGREYRCMRDTSIDSGSLNNAEREKLYADVKENLKKAFERHSK
FT                 YYNLRSNANCPQYTVNEKVLKKNTELSDKGKGYCAKLAPKYVPALVKRVVG
FT                 EHCYELEDEKGKRLGVFNCKYLKKFHQPPSRSVD"
XX
SQ   Sequence 8388 BP; 2421 A; 1874 C; 2024 G; 2069 T; 0 other;
     ttttggcgcc caacgtaaaa ttcgttgaat ttcgtactga tttggagtaa aacttgatta        60
     ttcgtggagt aattaatgtt cttttggagt tactgtgtta atttaattgc tgggcaagcg       120
     tgagagtttt ttggagtact aatgatagaa agttacacat gctgtggtct aacgaaaaat       180
     gagattaata aacgataaaa aatgatttac tgatgattta ttcaaggaaa actattacga       240
     tttgtttcgg gaaatattaa ttttggagtt ctgatcgaaa agattcgaaa aagagattat       300
     tttggaaaag attcgaaaaa gaatttattt tgggaaatta tttcggatac tgaggacatt       360
     caggcatatt tatttgtgga agtcactatc ggtgttattt atttatttat ttatttattt       420
     atgattattt attacagttt atgtggtatt tattaactgt cttgattaca gagtgcttgt       480
     gtcatagtag tatttgattg cgagtttgtc cagtttcgtt ttagggagat ttatcacaat       540
     aataaaattg attcaaaatg agtttcaaat ttccttacgc gaaacatctg cttaatgatg       600
     aggtggacta tgagttaagg gtgagaagtc ttgatgatgc gcttaactta gacacagaga       660
     ctaaagttga aattttgcaa aaacattacc aagaggacag tcaagagaaa cgcgaatatc       720
     tgtcaattta cacgatcgaa caggactacg acttcattct ttcgcgagtg tcttcgattg       780
     aactagccct acgagagaaa aaggatccaa aattgatctc acgtcttcag tattactatc       840
     tgcgtactaa aaacagtcag attacgcctc aaacgaagga aatgagggat gttttggtac       900
     aggatatttg tgatcttatg aagcacgttg gggttcagtt gcagccgatt agcgaagaag       960
     tacaccagga tgagggagca gctgctcttc cggtggaaca gaaccagtcg gggaacctgt      1020
     ctgtcaacca aactgctggc cggaatacca gcgtacgatc gaaccttgtc gtcgatacgg      1080
     tgactgactt gcttggagac ttaaatggga gtaaccagaa tcagcacaac ttgacctttg      1140
     gcgattttgg gatcgacctt agtccagttc gagtcaaccc aagttacact ggtgcgattc      1200
     ccaaagttcc cgcgagtaaa cgtcttggta tcgttccatc cagggaacag ttacaagccg      1260
     aaatggaaca aatgcgcaag gataacaagg aacttaggca gacgtgtagg gacttaaccg      1320
     atcgcttgca gaatatcaac ttagctgagt tacggaagaa ggcaattaat cctcaaaaca      1380
     actcggaagt accttcgcga caaaccgaac ctccgctgaa caaatcttca tcgagaacga      1440
     accagtttcc accgtcggcg cagaaccagg aaccgccgcc attgccggac aatcgacaga      1500
     acccgcagtt cagccaaggt ttaccactcc ctccaaatcc atcaaaccaa acctctcagt      1560
     cgtaccagtg gccgagaccg atgaaatggc cgaaccctca acagaatcgc ggagttccac      1620
     cacctccaaa tgaaactcac cagttgtacc agtggccgag gtcaaaccct cagcaagagc      1680
     ggggagctcc accacaatcg agccaaaccc cccagttgta ccagtggcca caacaggagc      1740
     agggttaccg gtttggtcta tcaggacaga ataaccgttt tcaaccaaca ggacaagtca      1800
     actcggtaaa agggaaccaa acgccgtcgc agagaaatca atttcaacag cagaacgcgc      1860
     agaacaacct gtcgcaggga ctgactttgc gcttgcatcg accgccgttt ggaaatgaag      1920
     tttccggaag gcacggtggc tacgagaact atgaccacgg agatgaggat gatgactccg      1980
     aagatgatgg cgattactgt caaggaaatt tcataccgtt tgaaaggacc agacgccgcc      2040
     gaacggagca gtacgacaga cggattgaga aatggaacat ttctttttct ggggaaccgc      2100
     gctcgaccac gctggaagac ttcatcttca aggtgaaaag actggccatg atgaactcga      2160
     tctctgaggg tagtatgctt agtcacatcc atctactact aagaggcgag gcatcagatt      2220
     ggttcttcac ctactacgag gaggattggg attggcttac cttcgaaacg aagattcgtt      2280
     tccggttcgg taatccaaac gagaaccaga gtattcgtca acggatcgcg gaccgcaaac      2340
     aacagagagg agaaaagttc tcagctttcc tgtcggacat cgagcgtttg aacaaacttc      2400
     tgacaaaacc gttgtcggaa agaaggatgt tccgcataat ttatgagaat atgcaacaac      2460
     gttaccgttc caagttatta tactttaaca tagacagcaa ggacctgctc gcagccttgt      2520
     gtcaacgcat cgacgctaac gatccttctc tcaacccgat aaatacgcgt cacggtgtca      2580
     acaatctcga ggcagatcaa ccggaaacgg atagcgaaga agagttgaac gccatcgata      2640
     gacggaacca gcgacaaccg gagaaccggt catggagacg ggaccgtccc gctgaggggt      2700
     acagaggcaa tccttcacag gaaacgacga gacttccgtt gtgttggaac tgcagacagc      2760
     acggacattt ctggagacaa tgtcaagcag aaaagactac gttctgttac gtctgtggaa      2820
     atgcaggaac agttgctgcg acctgcaacg tccacccaag aaggagcgcg cccgcacagg      2880
     ctgctcagac aacacaaggt caaggaaacc cacaccctca gtctggacaa aatccgggaa      2940
     actaaactcg gagtgccgca acgggaactc gagcattcca accaagaaca aagttcccag      3000
     ttctacacct tttttcgacc cttttcagaa cctgctggag atcaaaatcc acaccaacct      3060
     gtgtccacac gtgaagatcc gcgtgttcga aactgaattc gaggccctgt tagactcggg      3120
     tgccagcgta agcgttacca attcgagaga cgtagctgat cgttacggtt tgaagatttt      3180
     tccgtcaccg attcgaatct gtaccgctga ccacacacag tactcatgcg tggggtacgt      3240
     caacatgccg gttacgtttc gaaacgtgac gaaagtcgta gcagtagtaa ttgtaccgga      3300
     aatcacacga agcttcatcc taggcatcaa cttctggaca accttcggga ttaaaccgat      3360
     gatgcagggt gaaacgggac tagaagagat cgctgagatc accgcaggaa gtcaggacgt      3420
     tccggaagag ttgttccact tcttcataca tccggtcgaa gcacttccgg tcatcgagca      3480
     accaccaccg gacgattccc ttgacattcc gggcatcgat ctgccagaac cgtcggcgac      3540
     cacgccggaa acgatcaaga ccgagcatga cctgacggaa gcagagagag gaagtctggc      3600
     cgacgtcatc aggacattcc cgtgtacaac ggaaggtcgt ttaggaagaa cagcgcttct      3660
     gcagcacgag atcgtacttc gagaggacgc gaaaccccgc cgaatgccac tctaccgctg      3720
     ctcaccttcc atccaagcgg aaatggacaa ggagatcgaa cgctacaggc agatggatgc      3780
     catcgaggag tgcacgagtg agtgggcgaa cccattggtt cccgtccgca agtcgaatgg      3840
     taagctaaga gtttgtttgg actcgaggag gatcaatgcc atgacgaaga aggattccta      3900
     cccgatgcgc gacatgaaag ggatattcca tcggttgcag agtgcgtgct acttctccgt      3960
     aatcgacctg aaagacgcgt acttccagat accgctcaaa gaagattgtc gcgacttcac      4020
     ggcgttccgg acgtcaaagg gactgttccg ctttaaggtg tgtccattcg gactcacaaa      4080
     cgctcctttc acgatgtgca gactgatgga taaggtcatt gggtttgatc tggagcccca      4140
     tgtatttgtc tacttggacg acattgtggt ggcgaccaag gacctgtccg agcaccttcg      4200
     actactggga atcgtggcgg aacgtttgga aaaggcgaac cttacgattt cgctcgacaa      4260
     gtcgcagttt tgtaagaagc aggtgaacta tttggggtat ttgttaaccg gacagggcgt      4320
     cgcgatcgac agcaagcgga ttgatccgat cctgaactac agccgcccta agagcgttaa      4380
     ggacattcgc cgtctgctcg gcctggcggg cttttaccaa cggttcattt ccaattacag      4440
     caagatcgtc gcgccaattt cggacctgct acggaaggag aagaacaagt tccagtggac      4500
     ggaggccgcg gaagaaggat tccaagagtt gaaagccgca ctggtgtcgg caccgattct      4560
     ggccaacccg gattttgccg agccgtttgt gatcgagtca gacgcatctg ataatgctgt      4620
     cggagccgcg ctgatccaga agctggatgg cgagccacga atcatcgctt acttcagtaa      4680
     gaagttaagc agcacccaga agcgatacgc cagcgtggag aaggaatgcc taggcgttct      4740
     gctcgcgatc gagcacttcc ggcactacgt ggaaggaagc cgtttcaaag tcgtcacgga      4800
     cgcgcgtagt ctcctctggc tgttcacgat aggtgtcgag tctggtaact ctaagctgct      4860
     caggtgggct cttaagatcc aatcatacga tatcgagttg gagtatcgaa aggggaagca      4920
     aaacatcacc gcagattgtt tgtctcgctc gttagatgcc atcagcgtag cgcaagtcga      4980
     tccggagtac caggacctgg tcaagcagat cacgatggac ccgcaggcct acacggactt      5040
     ccgagtagtc gacggcagcg tttacaagtt cgtcaagaac aaaggaaagg tcgaggatag      5100
     tcgtttctgc tggaaagtct acccgccgaa gtcggaacga gaagagattc tccggaaaac      5160
     tcacggaacc gctcacctcg ggttcgagaa gactctggcc acgcttcggg aaagatattt      5220
     ctggccgttg atgaacaccg aaacgaaacg tttctgccag gattgtctcg tctgtcaaac      5280
     cagcaaagcg accaacgtca ataccacagc tccactgaaa gtgcagcgga agattgcgga      5340
     atacccgtgg caatttgtga cgatggacta tgttggaccg cttccggcat cggggaaagg      5400
     gagaagcacc tgtctgctgg tactaacaga cgttttcagc aagttcgtac tagtacaacc      5460
     atttcggcaa gccacggcgg attcgctcgt tccgttcgtt gagaatatgc tgtttttgct      5520
     gttcggggtt ccggaagtaa tcctcacaga taacgggaca caattcacgt ccaaactgtt      5580
     ccaagatctg ctgagtcgat atcacgtaac ccactggaga acgccgagtt accatccgca      5640
     gatcaacgat tcggagagag ccaaccgggt gataacaacc gccatccggg ccacgatcaa      5700
     aaaggaccac aaggattggg cgaacaacat ccagacgatc gccaacgcca tccgaaactc      5760
     ggtgcatgac gcgacgaagt acacgcccta ctttgtcctg ttcgggcgta acatggtctc      5820
     ggacggaaga gagtaccgtt gcatgaggga cacgtcgatt gatagtggga gtctgaacaa      5880
     cgctgagagg gagaaactgt acgccgacgt caaggagaat ctcaagaagg ccttcgagag      5940
     gcactcgaag tactacaacc tcaggtcaaa cgcgaattgt ccacagtaca cggtcaacga      6000
     gaaggttctg aagaagaaca ccgaactttc cgacaagggt aagggttact gtgccaaact      6060
     tgcgcctaaa tacgttcctg cgctggtcaa aagggtagtg ggcgaacact gctacgaact      6120
     agaagacgaa aaaggtaaac gtctgggcgt tttcaactgc aagtacctta aaaagtttca      6180
     ccaacctccc tcgcgttcgg tcgactaaca ccgcggtaga atcgatcagt ttcagttagg      6240
     attttgcaat tcaggatttt caaatttaaa tttctcgagc tatgtaccct ctaaccgtta      6300
     gagaggcaac caagcataaa ttatgctcca aaacactttt taggcatcaa caactacaac      6360
     tacatgccac acctgtccag cttcagaaga gagtacagat gattcatgag cttttgcgga      6420
     cgagatcgaa agaccaactc ccctagccaa catgaaaatc tatgcttgaa cctgctgact      6480
     gtcgacaaaa tatgctaggc aaactatgac ccaaccagct atgtcccttt cacccaatcg      6540
     aaagcaacaa gatctcataa aacctctaac cttccagtct cctcgatcaa agagttgagc      6600
     gtcccacaat aacataaact actggcgaca aaaacgaaga actagagcat aaataccacg      6660
     aacaccctcg aactagtcaa tcgcgatctc ggacatcgta aacagaccgt ccaacgagac      6720
     aaaattagat ttaggatagg aataggatca aggatgggag caaataccct acctgatgta      6780
     aataaaactt gttaattgtt agtcgcgcct aatcttataa aaactacatg tgagtactta      6840
     tcgtagtgtt agtttcttct tggatctctg tagattatgt ttatgttgag tcccacgaag      6900
     taatgttgcg tagcatgatc gatgatgtaa agttgtcttc aatttcgtcg tctggagcat      6960
     attttcggga acttgagatg agtagagatg tagtcagcat aattcagcat cgcgcagcat      7020
     aattttcgtc gtgacgtata ggttaggtta tccaattaga gttcgtcgca gcttccaatc      7080
     agatgagaag ttgatgacgt cacaccaaat tcagccttca gcaacatatt tctgtcgtaa      7140
     ttttcagcat tccagcaata aattttggcc ttccgcactt ggtttttagt tcagcagcat      7200
     aattgattca gccttccgca taactattag taaatttccg tcagccttca gcacccagag      7260
     ttgtttttgt cccacgatgc agctcctaca aaagaaaaca caaagcacat caatttttgg      7320
     atttttttta gggaaagtta atactccccc cgtaattaat catccggtaa agttgttttg      7380
     gaacaatcag gcacttttca ctactttttg gacacatttc agagcacatt ttgagacaaa      7440
     accacacgcg agttaaaatt acggacagcc acgtttgttt acgttttcgt ttgacgtcct      7500
     cggcgaagct ttttgacgaa gcttttggtt tgacaggtcc agttagttag gtagagtgaa      7560
     attttttcag tgtttatttg ggaaaaccct tgtggcgaat ttcagttgtc ttgttgaatt      7620
     tcgggtgacc agagtcgatt ctggggtgga aattcaatat agatatttta attaggctgc      7680
     gttctgtcag agttaaggac aaatttgcct gaagtaaagc tttggggtgg gcctaaactc      7740
     tgcagaacag atgatttcgg tgaattagga cgaagtttca tttgctcaac gtaatgattg      7800
     aggtagattc tgagtcttaa tgagccagta gtatttcggg aacacaaagt ttggagattt      7860
     taggttgtat tttcattaaa tatggaatat tatttattgg aaagtatatt ttagtttggg      7920
     gtattgattg ggatttgagt gttaggatga atgaatgagg aatgtcaacc attagtcata      7980
     gtcgaactgc tagtcctgga ctgttcaaac aagtagtttt ttctgggaga aatttagaga      8040
     ttatagccgg taaagtaaat gaccgaaaaa taaagtatct gtgattaggt tatacaattc      8100
     tgcactagca ttttgttgag gatttctgaa cgttcgctgg agaccggagt gaagacgttg      8160
     atggtcagta acaagcattt tctgtgatgg atcatgactt ggaaatagag atggaggtta      8220
     cttgtaaccg atgatcatat atgaccccga actgttgaag aatctttcgc aatttgtttt      8280
     tagtgaaatg taaataaatg tgtagttgtt agttttcggt ttttcgtaag atttcccctt      8340
     acgaaaattc agtttacact gaattttcgt aatttaagca tggagtga                   8388
//
ID   Gypsy-90_CQ-LTR repbase;    DNA;    INV; 2045 BP.
XX
AC   AAWU01007292;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-90_CQ_;
KW   Gypsy-90_CQ-I; Gypsy-90_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2045
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 560-560 (2011).
XX
DR   GenBank; AAWU01007292; Positions   91451   89407.
XX
SQ   Sequence 2045 BP; 537 A; 493 C; 513 G; 502 T; 0 other;
     tgtaacagtt ggcctgtttg gcaaaataat ttatttattt gtttcaatgt ttaatgttat        60
     ttatttacat tttgcaataa aattcacgag tcaaactccg cttgcacttt tctgtaaaac       120
     ctccgttgta ttcaccacgg taactcaacc tgttttggac cgattgcgtt aagacccgga       180
     gagagactct tgagagagat gagccgatct tgaactacct cagtgagaga acaccacagc       240
     tagacccgag aacacagttg ctaaaaaggg atggggagtt cgctacttct gtcgcacgca       300
     gttacccaga gagcatctca aggaatgacg taattccggt caaaccgctt gagcgtccgt       360
     tgcgaccttc cctattctga ggactccagg gctcgttcac tttgtaccca gctatcaacg       420
     agagtggaag tgcgcgtttt gtaccgcgag tttttggctt tttgtacaaa atgtaattta       480
     gtatagtgac gtgtttctta tttggtcttc taattaaatt tccgtttttc gtagtttccc       540
     gttagttagt cgtgtgtgcg ctagttgcga agaatttgtt aaatttgtgt gcgatcagga       600
     gctaaggtaa agtgctcata taaaacccgt gcatgtgctc atggaatttc tccgaacagt       660
     tcgcccgtta gcaacagcgc taaccatccc gcagcagcac cagcccagca gcagcgcgaa       720
     cacacgagca gcagaagcag cagaggaaaa agggagacga agttccccgc gcaccgtact       780
     tctcgttgtc gccgcacgtc accaggcgaa gcacgaggac gaagagcgtg agcgcacgct       840
     aggcggcgat ccgtcaccac atcgccccgg tgaagaaggg agggtccctg aaccaccaca       900
     cgaggacagc ggagaacgtt agtcccggcc ggagtcaacc ctaaggccgg agcttcctgt       960
     ccggttgcga acacctgaca gccgcggaac cgggaaaagt ccaaaaccgg cccgagccac      1020
     cccgtaaggc cgagtcccgc attccggtca gctgttcatc agctgacggc cacgtgtcgt      1080
     ccctgagctg aacaaccagc ccaagtagca gagaacaaca gcagcaacaa gatcatcatt      1140
     cggtgagtcc gttctatttg cacttgtggg aagaagcacg tccctagctg acgtagcgaa      1200
     gtttttgccg gcctagtgcc gaggcggcag acgcgaatcc gcccttgtcg gacgcgtcca      1260
     aagtttgagg agcgaacttt aatcccacgc gtttctacgc cacacgtgga tgacccccaa      1320
     aatttaaacg cgcgcgcgcg caattttgaa gaagcagtag ccgatttgat cagctgattg      1380
     ctggaagatg ggaagagcac atgagcacgg ttagggaaac agacagaagt aaagataaaa      1440
     cgcacacacg caaagtaggt agaaggtaga aaaacacgaa gatggccact aacactattg      1500
     tacaaatata agcatgctaa accaaaacga acaaacgaga actcaccttt ctttctggag      1560
     ttatgaataa aaaccaccct agtttttttt cggataaata aaacgttcgt ttaactgtta      1620
     tttaaaacct acttgtggag tttctttagt tgattgaatc tggagttatg tcacttttcg      1680
     tcgtcttttt tcgttctgtt ttctgaatga cagagcttgg cgtcgaatgc actgccacga      1740
     tcgaagcgct gcctggtggc aggtggcggc actgccaatg atgagctttt aggcatggga      1800
     agcaacacac tggagtaagt tgtctgggtg atttcttgtg gttggcgtga cggattctcg      1860
     gtttcgttta gtggcagttc tcggtgatct agctggttcg atcctgaatc ctccgatgag      1920
     gatcagtaca aaatgggctc gtcttttaaa agagtctcga ccgggcaaac aaacatggcg      1980
     tgcgatctcc ctttgggagt ggcgcataaa tctcacgctc accagatcga ctagcaacgg      2040
     ttaca                                                                  2045
//
ID   Gypsy-91_AA-I repbase;    DNA;    INV; 6204 BP.
XX
AC   supercont1.249;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-91_AA_;
KW   Gypsy-91_AA-LTR; Gypsy-91_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6204
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.249; Positions  129693  135896.
XX
CC   'AGTT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..2035
FT                 /product="Gypsy-91_AA-I_2p"
FT                 /translation="MAHSIGNEDIADNLVDFDSETSPVMNINKMSQRQVRR
FT                 LTISPTFRDRLNEVYENKAKQTADSVVENQRDKREREKNPDNERQIVPPPP
FT                 PPAMQREKVTRGENLDSIREPIVGEKYTGTKKKISSVVQEQNGAPDLDLNF
FT                 NPEVILVEDQKDSVEFLPPGFNITSQFSNPALTNNPLFFNLPNRSSQNRKS
FT                 LPVSQWPIKYAGNDNGIGLNLFLRRVEFFAQSEKMSKEELFESAHFLLVGP
FT                 AQDWFVAKWPILRNKNWDYFIQALRHQFLPSNIDHYIKVRSFSMFQAKAEL
FT                 FSNFLVRMEQFFLCRTTPMSEEDKFDIMWHTMRPIYRDRLALVDVKDIHTL
FT                 EQLCTRIDNNNESIMNKFVLSFENQKINEINFNSNPRTNLHSIVGPQSNNS
FT                 NQTNQQRVQQHNQNNSRNNQSNSNQNFNPQGNRPRNNSNYNNNQIIQQEYQ
FT                 PDCGWRELSLDNILRHYKVPDRRICFNCRKFGHHFTKCFSRRNVFCCICGL
FT                 PEFHYEECPFCEAKNQRRGD"
FT   CDS           2404..5235
FT                 /product="Gypsy-91_AA-I_1p"
FT                 /translation="MQIKGFVHVPFTIKQTTRILPCLVVPELGARCILGMD
FT                 FFKLFNIKLTFEDVEVFDTLANYNVELNNEIQPASHLLDAEETELLESVKS
FT                 TFKISEPGTLEACNVMKHSIELTDKNAIHLNPHPWSPTIQKKVNEEINRLL
FT                 DLDIIEPSNSNWALQVVPVTKENGDMRLCLDARKLNAKTVRDAYPLASSMR
FT                 ILNNLGKNRYFSVLDLKESFLQVKLAEDSKKYTSFKIIGRGLFQYKRLPFG
FT                 LINSSATMSRILDRVLKEGLYEPFIFSYLDDIIIATRTFKDHIKYLKIVAD
FT                 CLREANLSVNLAKCKFCLKRIKYLGFILSENGYQPNPERVTAISKFARPQT
FT                 PKEIRRFLGMAGYYRNFIPNFSGISAPISDLLKGKPKKIMWNDKAEQAFIK
FT                 LKECLISEPVLVNPDWAKEFTIQTDASDVAIAGILTQELDGKEHIIAYFSR
FT                 KLSSCEKKYGPTDKEGLAALEAIEHFRSYVEGAHFTLVTDCSAVTFICNSK
FT                 WRPSSRLSRWSVKLQEFDMTIKHRKGRDNVVCDALSRAVCAIFDDSTSKWY
FT                 NELKSKVSTTPEKYQNFKIEKGDLYKFVTSRSSLDMGRLEWKVVVPPDKMT
FT                 QLVDEEHAKLMHLGADKTLERIKLKYYWPKMKSDVKRILSKCGICKQSKHS
FT                 TIATVPPMGEQKDATRPFQMIAMDYISGFVRSKSGNSDLLVCLDVFTKYVR
FT                 LFPVKKISVESLTRLIKCDWFLKFGAPQVLISDNAVTFLANKFQDLLSKFH
FT                 VHHFKNSRRHCQNNPVERVNRVILACIRTYCQNDHRIWDSRIPEIEFAINN
FT                 TKHSSTGFTPFFLVHGYESIVDGRDHLQDRYTSDPSSDQFIQRRTEVMGTV
FT                 YEEVVKNNKKQFEKYKKNYDSKHKGLPPTFTIGQKVYKKNFKISSAVDHYS
FT                 AKLGPVYVPCKIIARRGATSYELEEGRNLGVFAAQDLIPE"
XX
SQ   Sequence 6204 BP; 2020 A; 1053 C; 1268 G; 1863 T; 0 other;
     aatggcgccc aacgtaaatg taactgtaca gtggattacc ctcttgacga agtttttcaa        60
     ttatggagtc attcgcttat aacaaagcag gttttgaatt ttcatgtgca atggtggatg       120
     gcttttgtaa atacctttag aataattttc tttgaattaa accttttgaa cttgtgttga       180
     gtttcttaaa aggaattaat aaataaattt gaattttgcc ttgcattttt ggagttttgg       240
     caaggagttg taaatatgta aatagataat tagtattaat gaatagaatt agtatattga       300
     attgaattta gtggagaatt tataagtact ttttcccatt tttatttacg tttcattgaa       360
     tttccataca tttttccata ttttaacaca gtttcagttt ttaggataat gaagagattg       420
     gccgatctca aaagtaatcg ttttgtcgtt aattgaatta aagtgaaatt aaagtgaaag       480
     gacactaatg gcgcatagca taggaaatga agatatcgcg gataatttag tcgattttga       540
     tagtgaaact agtccggtga tgaatataaa taaaatgagt cagcggcaag ttcgtagact       600
     cacaatctct cccacatttc gggacaggtt aaacgaggtt tatgagaata aagcgaagca       660
     aactgcggat tcggttgtgg aaaatcaacg ggataaacgc gagcgcgaga aaaatccgga       720
     taatgaaagg caaatcgttc ctcccccgcc gccaccggca atgcagcgtg aaaaagttac       780
     gcgcggtgaa aatttagata gcattcgcga accaattgta ggtgaaaagt acacgggtac       840
     taagaagaag atttcgtcgg tagttcagga acaaaatggt gctcctgatt tagatttgaa       900
     tttcaatcct gaagtgattt tagttgaaga ccagaaggat tcggttgaat ttcttccacc       960
     gggtttcaac attacttctc agttttcaaa tccagcattg acgaacaatc ccctattttt      1020
     caaccttcca aatagaagct cacaaaacag aaaatcgctt ccggtttctc aatggccgat      1080
     caagtacgca ggtaatgaca atggaatcgg tttgaatctt ttccttcgaa gagttgaatt      1140
     ctttgcacaa tctgaaaaga tgtcaaaaga agaattgttt gaatcagccc attttctttt      1200
     agtagggcct gctcaagact ggtttgttgc gaaatggccg attttacgca acaagaactg      1260
     ggattatttt atccaagcct tgagacacca gtttttgcca agcaacattg accactacat      1320
     caaagtgcgt tcattttcaa tgtttcaggc gaaagcagaa ttattttcga actttttggt      1380
     tcgcatggaa cagttctttt tgtgcagaac cactccaatg tctgaagaag acaaattcga      1440
     cataatgtgg cacacgatga ggcccatcta ccgagaccga ttggccttag tggacgtgaa      1500
     agatatacac actcttgaac aactttgcac tagaattgat aacaataatg aatcaatcat      1560
     gaataagttt gttctctcat tcgaaaatca aaaaattaat gaaatcaatt ttaatagcaa      1620
     tcctagaact aatcttcatt ccattgtcgg accacaatcg aacaatagta atcaaaccaa      1680
     tcaacaacga gttcaacaac ataatcaaaa taatagtaga aataaccaaa gcaactcaaa      1740
     tcaaaatttc aacccgcaag gcaatagacc aaggaacaat tctaattata acaataatca      1800
     aattattcag caagaatacc aaccagattg tggatggagg gagttgtcgt tggataatat      1860
     tctgaggcac tataaagttc cagatcgcag aatttgtttt aattgtagaa aatttggtca      1920
     tcatttcact aaatgtttct caaggcgcaa tgtattttgc tgcatatgtg gactcccgga      1980
     atttcattac gaggaatgtc cattctgtga ggcaaaaaac cagagaaggg gagattaaag      2040
     gaggtggttt ccccaacctc agaaattcct ccagatttga gtcgtaaccc tcaaatcata      2100
     aatgcatttc aacaaatcgt ttcagaaatc caggatacag attgtaccat tgagaaacac      2160
     gaaactgatg atataacaaa ttatgttggt tattttcatc aaattgaaac agtttttgtt      2220
     aatttaaata acgatgcaag atattttttg aaatttagtg ttttaggatt gcagctgcat      2280
     ggattattgg atagtgggag taatgtgtca ttagttggag aacactttgg aaatttaacc      2340
     aactttttac aaattcaaga tctgaacaaa aacgttaaaa tctcaactgc cagtggtgaa      2400
     ccaatgcaga tcaaaggatt tgttcacgtt ccatttacaa tcaagcaaac cactagaatt      2460
     ttaccttgtt tagttgtgcc tgaacttggt gctcgatgca ttctagggat ggactttttc      2520
     aaattattta atattaagct taccttcgaa gatgttgaag tgtttgatac gttggctaac      2580
     tataatgtgg aattaaacaa tgaaattcag ccagcctctc atctccttga tgcagaagag      2640
     actgaattac tagaatccgt taaaagtact ttcaaaatat cagagcctgg cactctagaa      2700
     gcttgcaatg ttatgaagca tagcattgaa cttacagata aaaatgccat tcatttgaat      2760
     cctcatccat ggtcgcccac gattcaaaag aaagtcaatg aagaaataaa tcgattattg      2820
     gacttagaca taattgaacc ctcaaactca aattgggcct tgcaagttgt accagttacc      2880
     aaagaaaatg gtgatatgag gctttgttta gatgctcgca agttaaatgc taaaactgtt      2940
     agagacgcat atcctttggc aagttccatg agaatcttga acaacttagg caaaaatcgc      3000
     tacttttcgg tgctggactt gaaagaatcg tttcttcagg taaagcttgc cgaagactcc      3060
     aagaaatata caagctttaa aataattggc aggggtcttt ttcaatacaa aagacttccc      3120
     tttggtttaa tcaacagcag tgctaccatg tctcgtatcc ttgacagagt tttgaaagaa      3180
     gggctctacg aacctttcat attttcctat cttgatgata ttataattgc aaccagaaca      3240
     ttcaaggatc acataaaata tctaaaaatt gtcgctgatt gcttacgaga agctaacctc      3300
     tctgtgaatt tggctaagtg taaattctgc ctgaaaagaa taaaatattt aggttttatt      3360
     ctttcagaga atggctacca gccgaaccct gaaagagtta ctgcgatctc caagtttgct      3420
     cgaccgcaaa ctccaaagga gattcgcaga ttcttaggga tggcgggata ctaccgcaac      3480
     ttcatcccga attttagcgg tatatcagcc cctatctctg acttgttaaa aggcaagccc      3540
     aagaagatta tgtggaatga taaagcagaa caggcattta tcaaactaaa agaatgtttg      3600
     atatcggaac cggtcttagt caacccagac tgggcaaaag aatttactat tcaaaccgat      3660
     gccagtgatg tggcaatagc tggcatactg acgcaggagt tggatggtaa agagcacatt      3720
     attgcctatt tttcacggaa gctgagctct tgtgaaaaga agtatgggcc caccgacaag      3780
     gaaggtttag ctgcactcga agcaatcgag catttcagaa gttatgtgga gggtgcacac      3840
     tttacgctgg taacggactg ctctgcagtg acgttcatct gcaattcgaa gtggcgtcct      3900
     agttcacgat tgtcacgatg gtcagttaaa ttacaagaat tcgacatgac catcaagcat      3960
     agaaagggac gggacaatgt agtttgcgat gcccttagtc gtgctgtttg tgccatcttt      4020
     gatgactcga cttcaaaatg gtacaatgag ttgaaaagta aagtgagcac tacaccagaa      4080
     aaataccaga attttaaaat tgaaaagggc gacttgtaca agtttgtcac ttccagatct      4140
     tctcttgaca tgggcagact ggaatggaaa gtggttgtgc cacctgacaa aatgacacaa      4200
     ctagtggatg aggaacatgc caaactaatg catcttggag cagataaaac ccttgagcga      4260
     ataaaattaa aatattattg gcctaagatg aaatctgatg tcaaaaggat tttatctaag      4320
     tgtggcattt gtaagcaatc taagcattcg acgattgcta ctgttcctcc aatgggggag      4380
     caaaaggatg ctacgcgtcc atttcaaatg attgctatgg attatattag tggttttgtg      4440
     cgtagtaagt ctggaaatag tgatttgtta gtttgtctgg atgtgttcac taaatatgtt      4500
     cgtctgttcc ctgttaaaaa gattagtgtt gaaagtttga ctcggttgat taagtgtgat      4560
     tggtttttga aatttggggc tccacaagtg ttaatttcag ataacgctgt aacgttttta      4620
     gctaataagt ttcaagattt gttgtctaag tttcatgttc atcattttaa aaatagcagg      4680
     agacattgtc aaaacaatcc tgttgagcga gtaaacagag tcattctggc gtgtattcga      4740
     acatattgcc aaaatgatca ccgtatttgg gactctcgga tccctgaaat agaattcgcg      4800
     atcaataata ccaaacattc atcgacggga ttcacacctt ttttcctggt gcatggctat      4860
     gagtcgatag ttgatggaag ggaccatctc caggataggt acacttctga tccatcatca      4920
     gatcaattca tccaacgcag gactgaagtt atgggcaccg tgtatgaaga ggtagttaaa      4980
     aacaataaaa aacagtttga aaagtataaa aagaactatg acagcaagca caaaggtctg      5040
     ccacccactt ttaccattgg tcaaaaagtt tacaagaaga atttcaaaat ttcaagtgct      5100
     gtagatcact attcagccaa acttggcccc gtttatgtcc cttgtaaaat tatagccaga      5160
     agaggagcaa catcatatga gctagaagaa ggaaggaatt taggtgtgtt tgcggcacaa      5220
     gatttgattc ctgaatagat tgtatgagag tatgtcttac tgaaattagt atgttagatc      5280
     gtgtaatgtc agagaaatcg ttgaatagtt tgtacaaatg aaatcgcgtg cgtttgaatg      5340
     attgagaaat attggtaaag gatgctcgag gaattggtga tcaccgagag tttgcgtagt      5400
     ttaagcataa aaagttcgtg tatgtgtaga agtttgaatt gaaagaatat ttgcgtagaa      5460
     taaaccgaga gttcgcgtag cctaagcata gaaagttcgt atttgagagt ttgagtcaat      5520
     aagatatttg cgtaagcgta aacgagattt cgcgtagatt taagatagtg tttgaggaat      5580
     gttaatttga gttgatctgt tatttgcgta aatgttactg agagtatatg tttgagtgaa      5640
     actcaattag attgtatgac cgtgtttgaa tttgttgtgt tataatgtat tgatagggaa      5700
     aatgtgtgga tagttataat caatgaatgt tagagttgct tgcacgattt gtattcttaa      5760
     taattttctt tgcccaatgt ttgaagctcc tcagctaagc cagaaccacc ttcagttatc      5820
     tgtgcaaaac aaaattaatt ggaatgtaat caaactctat gtacacacag cagttcatcg      5880
     cgaatgatcg ttgatctgtt cttggaccaa gtaagtccct gttcttaaag gacaagttga      5940
     gctgaaatcg agccagtaaa aataagcata tctatataca gcatatatat ctagtaaaca      6000
     agcatccttt cacatatgag agttgaaaat tttgcccaga caagaatgat cttcgtgttg      6060
     gaaaacagat aaaacttgac gacaccttac actactttac tatgtcgata tttgtcgatc      6120
     gtatgagtgg atttgctcat ggtaagaaaa gaccactgct atacaatgat tcaatccttg      6180
     tattgcagtc tggtgtgggg gtat                                             6204
//
ID   Gypsy-91_AA-LTR repbase;    DNA;    INV; 1142 BP.
XX
AC   supercont1.249;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-91_AA_;
KW   Gypsy-91_AA-I; Gypsy-91_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1142
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.249; Positions  128551  129692.
XX
SQ   Sequence 1142 BP; 295 A; 276 C; 251 G; 320 T; 0 other;
     tgtaacctta cacatgaccg tcactgttgt gtcgcgtgag tacctatgga actcaaggtc        60
     taccacaatg aatgagagca aaaattatct taccatgtac aaaacctcat cacactcaca       120
     acagaacaac acaacacatc ttccgatcag cgataatcga ccatagttga tcatgatctc       180
     cgtctcctct ggacttcaac accactgact gatctgtgta gaggtaaggg agagcacagc       240
     atccgagccc gattcttgtt tggctatcac cacacagcca acagataacc gaactgttgt       300
     ctagctacgc tcatatatgg tcttgaaccg cagtgtctcg atcagtagcc agttaatccc       360
     aaagcaggca agtcctaggc ataattacta ttgcgcctga ctggcatttt tgtgatttgt       420
     agtgagtatt aagtgcatct gtggtgtggt gagaaaattt agaagtgcgg gctggaaagg       480
     taaaattcgt cgatgaagtt ctgcaggtga tatacaagaa gtgcttgttt tctacagccg       540
     cctaaatgcc cagaacaccc aagttaactg catgtcgatg catgccatga tggagtagtt       600
     cgtatacgtt gttttgagat cggtaagcgt ggaagaaatt agttctacgg catatcccaa       660
     attgtgcttc taagccgaaa cttatgtgct cccttcctca actacctcta ttcaggcctt       720
     tcttttcaac ccctaaatcg atggcggtgg agaccatcag catggctcag tgcttgggca       780
     tcccagacgg ccatagtggg ctttgtcgcg gagtggttgc tgtcctaccg gcaatacggt       840
     ttgtccggac aagctcctga ttctgcggtc gccgagggat acacagaaca ctgacgccca       900
     tttcacctag gtttaagtac acaccctaac cgtaagtaat aaaaccatca ctaattttac       960
     tatgttaaat ttatgctttg attttgccat ggaatgactc gtaatgattt cagcgggttt      1020
     ccctgtattc gaacccggta gtaaggttga ttggttcatg ggtttaggaa ccaatgtctc      1080
     cgcttctcct ttctaccatc tttgtctccg tctcatgcga cctttcccct ggggaggcga      1140
     ca                                                                     1142
//
ID   Gypsy-91_CQ-I repbase;    DNA;    INV; 6656 BP.
XX
AC   AAWU01007361;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-91_CQ_;
KW   Gypsy-91_CQ-LTR; Gypsy-91_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6656
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 561-561 (2011).
XX
DR   GenBank; AAWU01007361; Positions   19552   26207.
XX
CC   Positions [4901-5377] - Integrase core
CC   'TTAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           465..2588
FT                 /product="Gypsy-91_CQ-I_2p"
FT                 /translation="MDFDNLYKTMDVSHLSVEEVEHELLIRNILYDFKTHE
FT                 SVKRRKLKDRMKEEKEMGVQPAALARTWRSTPDEIKITSTAIKLIHKMLNA
FT                 KHDKEVRRRLRTRMIHYRVRLEHLATSADAHKYVTKINEIQFEIAEIFENF
FT                 FVKASAKESQSEAEKKAIRDKISEVLKTVQNELDVLNETASALEIDKEIEQ
FT                 DESKEIQAKEGGNDKLQDVIAKLSDYEQGKVADVDSLLKLFKDFVVDTAVD
FT                 EKQRQKAEIEREKARKQEIAVNIEQKEKLEEILLQVTNELQKMEALQSKDP
FT                 ASEKNLKTDKKKTPNSSDSDSESFDEEEEERGTRRLKNKNSKRKKKISFSG
FT                 LSSTEISSSSSSSSSSDTSSSSSSSESSSDSEEERKKKKKRKRKNKKNNRN
FT                 QHMKRMPVAEWKLKYDGKDGGKILTEFLKEIKMRCRSEKVSDKEIFRSAIH
FT                 LFTGRAKDWFIDGTECRDFRNWKELKKELKREFRPHDLDFQMEVQATNRKQ
FT                 ARGEKFADYYYEMKKIFQNMNEQISDKKKFRLIWRNMRHDYKNALTGAKIG
FT                 SLKRLRKLGKIVDENNCNLYQKPTEFVNRPRSAQINEVVSSGKAKSKQNPY
FT                 SSGNQSKSFTTGKNNNSKPKVENQGKEGNEKEQKGEEKQDCMEGTAKSTFN
FT                 QLVAQYKRPPLGVCYNCRESGHHYAECPKPKDKFCRLCGFADVSTTNCPAC
FT                 QKNADSSA"
FT   CDS           2768..5767
FT                 /product="Gypsy-91_CQ-I_1p"
FT                 /translation="MGREMLGLLDSGAQCSVLGNGSENFVKSMKLTLYPSL
FT                 VKVKTAGGNCVPVKGYVHLPITFNNTTKIINTLVAPELKRKLILGYGDFWK
FT                 AFEVRPSVPMEVSIEEMECMLGEEEGNRNELTVEQRKQLEEVKKLFKVAIE
FT                 GECLETTSLMSHNIELKDEFKRAPPVRINPYPTSPEMQRKINVEIDNLLAQ
FT                 QVIERSKSDWSLSTVPVVKPTGEVRLCLDARRLNDRTVRDAYPLPHQDRIL
FT                 SRLGASKYLSTIDLTKAFLQIPLDPSSRKYTAFSVLGRGLFQFTRLPFGLV
FT                 NSPASLARLMDEVLGFGELEPNVFVYLDDIVVVNDTFEAHLDSLREVAKRL
FT                 QKANLSINIDKSKFCLSELPYLGYILSPEGLRPNPDRISAIVNYERPQSIR
FT                 ALRRFLGMANYYRRFISNFSEKTAPLTNLLRKKPKSIVWNDQAEESFNKIK
FT                 ESLISAPVLSNPDFYLQFTIQSDASDTAIAAILTQQHEEGEKIIAYFSRKL
FT                 TPAEQSYAATEKEGLAVLSAIEKFRPYIEGSYFVVITDASALTYIKNGKWK
FT                 TSSRLSRWSIELQGLHCEIRHRRGRDNIIPDALSRAVEMIEVEELVDDWYS
FT                 GLFRKVQNSPDEHLDYKIESGKLYKFVPTKSDVFDYRYEWKLCVPEALRSD
FT                 ILRREHDNSFHIGYEKLLEKVRQKFFWPNMASIIKKYAQNCKSCKEFKPTN
FT                 VSQHPEMGKQRLTTKPFQILALDFIQSLPRSKSGNQHLLVLMDLFSKFTIL
FT                 VPVRRIGTDLITKILQEQWFLRYSVPEIIISDNASCFLSKDFKAFLDRFNV
FT                 QHWTNARHHSQANPVERLNRSINQCIRTYVKNNQRLWDTRIAEVEFTINNT
FT                 KHSSTGFSPYRIIYGHEIVASGEDHKLDVETKELTEQERIEKKLKIDRTIY
FT                 DTVYSNLQKAHEKSKKNYNLRFQKPAPVYEIGQKVYKRNFTLSSAGDAYNA
FT                 KLGPAYVSCTVRARRGTNSYELEDEDGKNLGVFSSADLKPGPPDS"
XX
SQ   Sequence 6656 BP; 2254 A; 1132 C; 1486 G; 1784 T; 0 other;
     attggcgccc aactataatc aactaagctg atcacgggtt cagggaaaca agctagagtg        60
     gagagtgtta gggccaaggt gtagatctgt tgtgtgctct acagagtaaa gggtggaatg       120
     ttcaattgtg acactattct catcgtcact acgaattgat aagatttgtg ttttattgcc       180
     ggtgcgcgta cggtcattag agagaatatt gaagggttaa aagtaccaaa tagttgctcg       240
     cgactgattt acgaccgaaa gggtcaattt tgctttcgat tctcatcctt ttttgggtcc       300
     tgattcataa gaatcttgat tgtaaattgg tagattttaa gccatgtttt attacaatag       360
     ttttaatatg tttagttttt ttttggcatg actgaagatt tcatgtaaat attagaaatt       420
     tggcatattt ttgaataaaa gtgtatattt tgtagatttt tgaaatggat tttgataatt       480
     tgtataaaac tatggatgtt tcacatctat cagttgaaga agttgaacat gaattgctta       540
     ttagaaacat tttgtatgat ttcaaaacgc acgaaagtgt caaaagaaga aagctcaaag       600
     atcggatgaa agaagaaaaa gaaatgggag ttcaaccagc agctttggct cgtacttgga       660
     gatcgacacc agatgagatc aaaataacca gtacagctat caaacttatt cataaaatgt       720
     taaatgctaa gcatgacaaa gaagttagac gcagattaag aacacgaatg attcactatc       780
     gtgtccgact tgagcactta gcgacttcag ctgatgctca caaatatgta acaaagatta       840
     atgaaataca atttgaaatt gctgaaattt ttgagaattt tttcgttaaa gcttctgcaa       900
     aagagagcca aagtgaagct gaaaagaaag cgataagaga taaaatttca gaggttttga       960
     aaacagttca aaacgaattg gacgttttga atgaaactgc ttctgctcta gaaattgaca      1020
     aggaaataga acaagatgaa agcaaagaaa ttcaagctaa agagggagga aatgataaac      1080
     ttcaggatgt gattgcaaaa ctatccgatt atgaacaagg taaagtagca gatgttgatt      1140
     cgctattaaa acttttcaaa gatttcgttg ttgacacagc tgttgacgaa aagcaaagac      1200
     agaaagcgga aattgaacgt gagaaagcta ggaaacaaga aattgctgta aatattgaac      1260
     aaaaagaaaa gctcgaggaa attctcctgc aggtaacaaa tgagctgcaa aagatggagg      1320
     cgctgcagtc gaaagaccca gcgtcggaga aaaatcttaa aactgataaa aagaaaactc      1380
     caaattcttc tgattctgac tctgaatctt ttgatgagga agaagaagaa agggggactc      1440
     gcagactcaa gaataagaac agtaagagga agaagaaaat ttcttttagt ggtttatctt      1500
     cgaccgaaat atcatcaagt tcgtcgagtt ctagttcgtc agatactagc tcgtcgtctt      1560
     cgagttctga gagctcgtcc gactcagaag aggagagaaa gaagaagaaa aaaaggaaac      1620
     gaaagaacaa gaagaataat aggaatcagc acatgaagcg tatgcctgtc gctgagtgga      1680
     aactgaaata tgacggaaaa gatggtggaa aaattttaac agagtttttg aaagaaatca      1740
     aaatgaggtg tagatcagag aaagtgtcag ataaagagat ttttcgttcc gcgatccacc      1800
     ttttcacggg tcgtgccaaa gattggttca ttgatggtac cgaatgtagg gattttcgta      1860
     actggaaaga gttgaaaaaa gaattgaagc gtgaatttcg tccgcacgat ttagattttc      1920
     agatggaagt tcaagcaaca aaccgtaagc aagctcgcgg tgaaaaattt gcagattatt      1980
     attatgaaat gaagaaaatt ttccaaaaca tgaatgagca gatctccgac aaaaagaaat      2040
     ttcgtctaat ctggagaaac atgcgtcatg attacaaaaa tgctttaacc ggtgcaaaaa      2100
     tcggttcgct taagcgactg aggaagctcg ggaaaattgt tgatgaaaat aattgtaatt      2160
     tgtatcagaa accgaccgag tttgtgaata gaccgcgctc agcccagatt aatgaagttg      2220
     tatcttcagg gaaagctaag tcgaagcaaa atccttatag ctcgggaaat caatcgaagt      2280
     ctttcacgac tgggaaaaac aacaacagca aaccgaaagt agaaaatcaa ggaaaagaag      2340
     gaaacgaaaa ggaacaaaag ggagaggaaa agcaggattg tatggaaggc actgcaaagt      2400
     cgacgtttaa ccagcttgtt gcacagtaca aaagaccacc acttggggtg tgttataact      2460
     gtcgcgagtc tggtcatcac tacgcagaat gtcctaaacc gaaagataaa ttttgtcgtt      2520
     tgtgcggatt tgcagatgta agcacaacaa attgtccagc ttgtcaaaaa aacgcggaca      2580
     gttcagcttg aggggggttg ctgaatccgt gaaaaacaca cctcccactc gtacaaggat      2640
     agaagttgaa ctgaacagca gcggatttga acctgttaga agtaccgaat atgtcgaaga      2700
     tcgagtgatc gatgaactct ttgttcaagt gcagggagat gagcgacctt ttgcgagagt      2760
     aagtgtgatg gggagagaaa tgcttgggct tctggatagt ggagctcagt gctcagtgtt      2820
     gggaaatgga tcggaaaact ttgtaaagtc gatgaaacta acactctatc cctcattggt      2880
     gaaggttaag accgccggtg gaaattgcgt accagtcaag ggttatgttc atttgccgat      2940
     cacgtttaac aacactacga aaattatcaa cacacttgtc gcacctgagt tgaaaagaaa      3000
     gttaattttg ggttacggcg atttttggaa ggcgtttgaa gtccgtccgt cagtgcctat      3060
     ggaggtatca attgaggaaa tggaatgtat gctcggagaa gaggagggga atagaaacga      3120
     acttacggtg gaacagagaa aacaattaga agaagtaaaa aaactgttta aggtggctat      3180
     cgagggggag tgtttagaaa cgacctcttt gatgtcccac aacatagaac tgaaagatga      3240
     gtttaaacgt gcaccgcctg ttcgcattaa tccctatcct acttcaccgg agatgcaaag      3300
     gaaaattaat gttgaaattg ataatcttct agcacaacag gtcattgaga ggagtaaaag      3360
     cgattggtca ctgagcactg tgccagtggt gaagccaacc ggagaagttc gattgtgcct      3420
     ggacgctcgt cgtttgaacg atcgtactgt aagggacgcc tatcccttgc cacaccaaga      3480
     ccgtatacta agccgactgg gggcaagcaa gtacttatcg acaattgatt taactaaagc      3540
     gttcttgcaa attccccttg accccagttc gcgcaagtac acggcctttt cggtgttggg      3600
     aagaggattg ttccagttca ccaggttacc cttcggctta gtcaacagtc cggctagttt      3660
     ggctcggctg atggacgaag ttttaggatt tggtgaactg gaaccgaatg tattcgtata      3720
     tctcgatgac attgtggtcg taaacgatac attcgaggca caccttgaca gtctgcgtga      3780
     agtagcgaaa agacttcaaa aggccaattt gtcgatcaac atcgataaat ccaaattttg      3840
     cttatctgag ttaccttacc tcgggtacat tttgtcaccc gaagggttga gacccaatcc      3900
     agaccgaatt tctgcaattg tgaattatga gagaccgcaa tcgattcgtg cgttgcgtcg      3960
     ttttttaggc atggcaaatt actacagaag atttatttct aactttagtg aaaaaacggc      4020
     tccgcttaca aatcttttac ggaaaaagcc caaatctatt gtctggaatg atcaagccga      4080
     agaatcgttc aataaaatca aagaaagttt aatttcagca cctgtactga gcaatcctga      4140
     tttctatttg caatttacaa tacagtcaga cgccagcgat acggcgatcg ccgccatttt      4200
     gacgcagcaa catgaagagg gggagaaaat catagcatac ttttcgagaa aattgactcc      4260
     tgccgagcaa tcttatgcgg cgacggagaa ggagggctta gcggtccttt cagcgatcga      4320
     gaagttccgt ccttacatag aaggttcata ctttgtagtc attacggatg cttcggcatt      4380
     gacttacatc aagaatggaa agtggaaaac ttcgtcccgt ttaagcaggt ggagcataga      4440
     acttcaaggt ttgcattgcg agattagaca caggcggggg agggacaaca taatccccga      4500
     cgcactgtcc agagcggttg aaatgatcga ggtcgaggag ttggttgatg attggtactc      4560
     agggttgttt aggaaagttc aaaatagtcc agatgagcat ttagattata aaattgagag      4620
     tgggaaactt tacaagttcg tgccgacgaa gagcgacgtt ttcgattatc ggtatgagtg      4680
     gaagctttgt gtccccgaag ctctgcgctc ggacattttg aggagagaac acgacaattc      4740
     ttttcatatc ggttatgaga aattgttaga aaaagtaaga caaaagtttt tctggccaaa      4800
     catggcgtcc attatcaaga agtacgcaca aaattgcaaa tcatgtaaag aatttaaacc      4860
     aactaatgtt tcacagcacc ctgaaatggg aaagcaaaga ttaacgacaa aaccttttca      4920
     aattttggct ttagatttta ttcaatcctt gccaagaagt aagtctggta atcagcatct      4980
     attagtgttg atggacctgt tctcaaagtt cacgattttg gtccccgtgc gaagaattgg      5040
     aacggattta ataaccaaaa ttttacagga acagtggttt ttaaggtatt ccgtaccaga      5100
     aatcataatt agcgataatg ctagctgttt tctgagtaaa gattttaaag cctttcttga      5160
     ccgattcaac gtgcagcatt ggactaatgc acgccatcac agtcaagcaa atccggtcga      5220
     aagactaaat aggagcataa atcaatgtat tagaacttat gtaaagaaca accaacgact      5280
     gtgggataca agaatcgctg aagtggaatt tactatcaat aacaccaaac actcgtccac      5340
     tgggtttagt ccgtaccgaa tcatttacgg tcacgagatc gtggcgagtg gggaagatca      5400
     caaactagat gttgaaacaa aagaattaac tgaacaagag cgaattgaaa agaaattgaa      5460
     gatagatcgt accatttacg ataccgtcta tagtaacctt caaaaagcac acgaaaagag      5520
     taagaagaac tacaatttac gattccaaaa accagcgccc gtttacgaaa ttggtcaaaa      5580
     agtttataaa cgaaatttta cactgtcctc ggcaggtgat gcatacaatg caaaacttgg      5640
     cccagcatac gtgtcctgta cagttagagc gagacgaggt acgaactcgt acgagctcga      5700
     agatgaagat ggcaaaaatt tgggagtttt ctcatccgcc gatctgaagc ccggtccgcc      5760
     ggattcttga gcatgaattt agaatatttc aataaatttt agcatgtttg tagcgtaact      5820
     tttaaggtgt ttgtagaggt tataattttg tccaagcatt atttattgcc attagtgttg      5880
     tgaaaagtaa aaaaatcatt gtttgtgagt ttaaaaatgg ctgagtctcc atgttgaatt      5940
     gagctctgca agaatataaa tttggaaagc cacagaaaaa caaagaaaac agactagata      6000
     acagaatcga tgcgaattca tgaaatagcc caattttttt aaatttaaat ttacgcattt      6060
     gtaggcgaat gcaagcataa ttaactcatg cggaataaaa ccggcaaagg ccatcaaaaa      6120
     ttgattaatg caaaatttcc gatgaagcgt agaaaatttt agaactagtt cattttcgtt      6180
     atgcaaacac tagccgaatc aaatgttatc gaatttcact aatcactttc aaaattacca      6240
     tagttttttc caataaatca ctacgttttt aaaacacaat tttgccaatc acacaatccc      6300
     aaccttccaa cccaatagat ggatcccatc tgattctaga gagttatctg cttaagtttg      6360
     tagcaaagtt ttgaaaaaga gaggaactta tctcttccac tcaaacaact ttgagattca      6420
     tggatgagag atgttcaaaa attgatgaga agattaatgg cgttattaaa catagacttg      6480
     tttaatttga acaagattat ctatttggtt attttaacgt tttagtatta attcttttga      6540
     aatgtcaaat ttgcgaaagg catagccaaa acccggatac aacagacttt aagtcaagat      6600
     ggaatataaa ttgtcaacta aagttgtcaa tttattttag agggggtgta gggtag          6656
//
ID   Gypsy-91_CQ-LTR repbase;    DNA;    INV; 1369 BP.
XX
AC   AAWU01007361;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-91_CQ_;
KW   Gypsy-91_CQ-I; Gypsy-91_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1369
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 562-562 (2011).
XX
DR   GenBank; AAWU01007361; Positions   18183   19551.
XX
SQ   Sequence 1369 BP; 373 A; 363 C; 322 G; 311 T; 0 other;
     tgttaccgtt gtggcatttt accctattac tcaccaagag caacaagaga tagagagtga        60
     gagcaaacgg tcatagtact cttcggagtg aactcactat gatgacccgt gccataatat       120
     tcgtttacat agtttcgatg tttttcaata gtattttcta tatgttttgc gtaatatatg       180
     ataggttagt cattgtatgt tattcgttcg tcctttaatc aatggttaat agaaggaaat       240
     tgtttaggag cactagtttg aataaactcc acagtaggat tagcaacggt cattttgaat       300
     acacataaca caatttgtta aacactcctc accaattatg tgtactgccg tgcgactaac       360
     gatggaatga ataaaaaaag ggtcacgatg aacctggatg atcgtggggg ggaggttagc       420
     tactgggtca tgtccactgc agcgatcttt tccacttgaa cctcggaacc aacaacaccc       480
     atcaaagttc cagaatataa gtaactcggt ctaagaagtt cgtccggtta ccaaagccaa       540
     ataaaagtcg accacggata gtttatcctc gcgagtggaa aagtgatttg gagcaacgtg       600
     cagaattgcg tagaatcagg taggcgaagc tcgctaacct caaacccgaa ccccagtagc       660
     aaacccaacc taaccctccc ccattgtgcg aaacccacgt gtaggaccca acagttttaa       720
     gctgtagaac cgctatcgtc ggggaacgga gttctccccg gccagtccgg gctgtagaca       780
     cgccaaacgt ctcagccaga agtcgagccc gcccaaaaag ctcgccaagc aggtcccgtt       840
     gaccacgtgt cctgacgtgg cacccgcaga ccgccgtcct cggtccgcga ggtaaagtac       900
     cccctttggt taccaccaag cccgttgtgg tcgttcatcc gccgacgttc ggtagcctgg       960
     ctaggctccg tcggtccatc cgcacccgtc cagaagcaca cctgtgcgcg actcggtaag      1020
     ccggacgagg cttcgccgag atcatcgtca gcagctcgca gcaaactgga gtgcagaaca      1080
     ccagcagcag cacgcagtac cgccggccgg ccccgaacac acacttacac acacgaacac      1140
     ttcgtaagta attaaaagca agtgaaaaat gcaaagaccg tgtttctttt gagtccctga      1200
     tcagcttccc cctgttgcat ctcgacccag agctgaggag tcctctccga aagctcgccg      1260
     cgtttggtaa aagaggccag tggagagccc accaccgatc cccgtggcta ttagaccagg      1320
     gagaggtgga tttgtctgga ggcgttgacc tccaagttaa aaactaaca                  1369
//
ID   Gypsy-92_AA-I repbase;    DNA;    INV; 4284 BP.
XX
AC   supercont1.321;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-92_AA_;
KW   Gypsy-92_AA-LTR; Gypsy-92_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4284
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.321; Positions  724345  720062.
XX
CC   Positions [3232-3690] - Integrase core
CC   'CAGTC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           19..4254
FT                 /product="Gypsy-92_AA-I_1p"
FT                 /translation="MAENGNENGRRNQEQVRENPPPIGAAAVAGAAAGVAA
FT                 GAPLAMQSNFTIEPYDRHRMKWSRWVERLEGALLLFRVPDDLKRPMLLHYM
FT                 GGENYDIVSDKMAPDKPQEKTYDEIVQLLETHFNPRPLEILENFRFKCRRQ
FT                 GDEKVDESIDDYLIALRKLAITCNFGNYLNTALRNQFVFGLKDRGIQARLL
FT                 EVHDLTLDRARDLAVSMEMSAKGGQEIQSRAKADVNLVEHPVNKSGKPKGK
FT                 KPGNAAASQSHHSDSKQGSKKGACYRCGSTNHFANKCVHVKTVCNFCRMTG
FT                 HIEKVCMKKKSACSTKSKSDFHQVEESVAECKQKKKEDVYMDEICGLYDAE
FT                 SRVDKFWVAISVNDSKVRFEVDSGAPVAIMSVTDYEKLLPAVKLDPPDLSL
FT                 VSYCGNSIKLRGMCTVSVQYAGKVHRLLLYVADNRKHPLLGRSWMKVLRLD
FT                 VNKFYEEVHSVAYNGVKCTADESVKKLIARYGSVCADSMGKIKGLTAKLRL
FT                 KPNAHPAYIKARPVPFSLRSAVEQEIEKLVKEGVLEKVNHSDWATPMVPVM
FT                 KLNNKVRLCGDYKITVNPNLVVDEHPLPTIEELFANVAGGEKFSKIDLSQA
FT                 YLQLEVDPDQREILTLSTHLGLYRPTRLMYGVSSAPAIWQRLMEEVLNGIP
FT                 GVTVFLDDIRVTGPNDEVHLQRLEEVLNRLSNYGMRINLDKCVFFADKIEY
FT                 CGYVVDRHGIHKVRKKIEAVQNMPTPENKEQVRSFVGLVNYYGRFLPNLST
FT                 MIYPLNRLLRNDVPFEWSKSCEEAFRKVKQEMQSDSFLVHYNPELPLVLAT
FT                 DASPYGVGAVLSHILPDGSERPIQYASQTLNETQRKYKQVDREAYAIVFGI
FT                 RRFHQYLYGRKFLLYTDNEPVKQIFSETKGLPTMSALRMQHYATFLQSFDY
FT                 TIKFRPTKQHYNADAFSRLPIATKRPDNVVEEVDMLETSIIETMPVTVDDL
FT                 AKRTAADGSVKVLLQGLRNGKTVEAKDRFGIDQNEFSLQQGCIMRGIRVYI
FT                 PPDLRMKVLNELHSTHFGSTRLKTLARGYVWWERIDRDIEDLVKNCASCQV
FT                 TRPNPAKAPLHCWEPATQPFERVHVDFAGPFMGKYFIVFVDAYTKWPEVKI
FT                 LRDITTATTINACREFFATYGIPCVLVSDRGVQFTSGEFQRFLQLNGIFHK
FT                 MGAPYHPATNGQVERFIQTFKNKMKAMKCDKSRMHVELCNILLTYRKTIHP
FT                 TTGKSPSMMLFNRQIRSRLDLMLPGPTFSEKVDPKVRTIPEGGRVAARDFL
FT                 DQEKWKYGRVIEKLGKLHYMVQLDDNRVWKRHIDQLREVGPHLPASRNLRE
FT                 MPVLPNLPQQPAATSNATRGNAVPIYQEASTSTEPVAIPASSRVEPASVSV
FT                 SGPRPTLSVPSTVPSASKPTTEREPSEGSYQQTPRRSTRMVKAPKRLDL"
XX
SQ   Sequence 4284 BP; 1166 A; 934 C; 1172 G; 1012 T; 0 other;
     attaatctgt cgacgaggat ggcagaaaac gggaacgaaa acggccggag gaatcaggaa        60
     caagttcgag aaaatcctcc tccgatcggt gctgctgctg tcgccggtgc tgctgctggg       120
     gttgctgctg gcgctccgct agcaatgcaa tcgaacttca ccatcgagcc atacgatcgt       180
     catcggatga agtggtctcg gtgggtcgag cgtttggagg gagcattgtt gctgtttcga       240
     gttccagacg atttgaagcg tccgatgctg ctccattaca tgggtggaga gaactacgac       300
     atcgtttcgg acaagatggc tcctgacaaa ccgcaggaga aaacgtacga tgagatcgta       360
     cagctgctgg aaactcattt caaccctcgc ccgctcgaaa ttctggagaa ttttcgcttc       420
     aagtgtagga ggcaaggcga cgaaaaagtc gatgagtcaa tcgacgacta cttgattgca       480
     ctgcggaaat tggcgataac gtgtaatttc ggcaattacc tcaacaccgc tctgagaaac       540
     cagttcgtct tcggcctgaa ggatcgcgga attcaggcaa ggctcttgga agtgcacgac       600
     ctcacgttag atagggctcg cgatcttgcg gtatcgatgg agatgtccgc aaaagggggc       660
     caagagattc aatctcgtgc gaaagctgat gtgaatttgg tcgagcatcc ggtaaacaag       720
     agtggtaaac cgaagggtaa gaagccgggg aacgctgctg ctagtcagtc gcaccacagt       780
     gattcgaagc aaggttcgaa aaagggtgca tgctaccgct gtggcagtac gaatcatttt       840
     gcgaacaagt gcgttcatgt gaaaactgtt tgcaatttct gccgcatgac gggccacatt       900
     gagaaagtgt gtatgaagaa aaagagtgct tgcagcacga agagcaaaag tgatttccat       960
     caagtggaag aaagtgttgc agaatgtaaa cagaagaaga aagaagacgt ttacatggat      1020
     gaaatttgtg gcttgtacga cgcggagagc cgagtggaca aattttgggt cgctatctcg      1080
     gtgaatgatt ccaaagtgcg attcgaggtg gacagtggtg ctcccgtcgc gattatgagc      1140
     gtgacggact acgaaaagct gctgccggct gtgaaattgg atccaccgga tttatcactt      1200
     gtgagctact gtggaaattc gatcaaattg cgcggtatgt gtacggtctc ggtgcagtat      1260
     gcaggcaaag ttcatcgatt gttgttgtac gtggcggaca accgaaagca tccgttacta      1320
     ggaagaagct ggatgaaagt tttgcgactt gacgtgaaca agttttacga agaagtacat      1380
     tcggttgcgt acaatggtgt aaagtgcacc gccgatgaat cggtgaaaaa gttgattgcg      1440
     cggtacggta gtgtttgtgc tgattcgatg gggaagataa aagggcttac ggcaaagttg      1500
     cggttgaagc cgaacgccca tccggcgtac attaaagcta ggccagtgcc gttttctttg      1560
     agaagtgctg tcgagcaaga aattgagaag ctcgtgaaag aaggagtgct cgaaaaagtg      1620
     aaccatagtg attgggcgac tcctatggtc cccgtgatga aactgaacaa caaagtgcga      1680
     ttgtgtgggg attacaaaat aacggttaac cctaatctag tagtggatga gcatcctctc      1740
     cccacaatcg aggagctgtt cgcgaatgtc gccggtggag agaaattctc gaagatagat      1800
     ctgtcccagg cgtatttgca acttgaggtg gatccggatc agcgtgaaat tctgacgctg      1860
     agcacacacc ttgggctgta ccggccgacg cggcttatgt acggcgtgag ctccgcacct      1920
     gcaatatggc aacgattaat ggaagaagtg ctaaacggaa taccgggagt gacagtgttt      1980
     ttggacgata tacgtgtgac gggtccgaat gacgaagtac atttgcaacg acttgaagaa      2040
     gtgcttaatc gtttgagcaa ctacggaatg cgtataaact tggacaagtg cgtgttcttt      2100
     gcggacaaaa tagagtattg tggttacgtt gtcgaccgtc acggtataca caaagtgcga      2160
     aagaagatcg aagcggtgca gaatatgccc actcccgaaa acaaagaaca ggttcgttcg      2220
     ttcgtcggtt tagtgaacta ctatggacgt tttcttccta atctgagcac gatgatctat      2280
     ccgctgaatc ggctgttgcg gaacgacgtg ccgttcgaat ggtcgaagtc gtgcgaagaa      2340
     gcttttagga aggtgaaaca ggagatgcag tcagacagtt ttctggtgca ctacaacccc      2400
     gagttgccac tggtgttggc gactgatgcg tcaccgtacg gagtcggtgc ggtgttaagt      2460
     cacatcttgc cggacggatc ggagcgtccg atacagtatg cgtcgcaaac cttgaacgag      2520
     acacaacgta agtacaaaca agttgatcgt gaagcctatg cgattgtttt cggcattcga      2580
     cggttccatc agtatttgta tggacgcaaa ttccttctct acacggacaa cgagccggtt      2640
     aagcaaattt tctccgagac gaagggatta ccgactatgt cagccttgag aatgcagcac      2700
     tacgctactt tcctccaatc tttcgactat accatcaaat ttcgccccac taagcaacat      2760
     tacaatgcgg acgcgttctc acggttgccg attgctacga agcggccgga taacgtcgta      2820
     gaagaagtcg atatgttgga aacgagtatt atcgagacga tgcctgtcac cgttgatgac      2880
     ttggccaaga gaaccgcggc agatggttcg gtcaaagtgc tgcttcaggg tctgcgaaac      2940
     ggaaagacag tggaggcgaa ggatcgattc ggtatcgatc agaacgaatt ctcattgcag      3000
     caagggtgca ttatgcgcgg tattcgggtt tacattcctc cagatttacg gatgaaggta      3060
     ctcaacgaat tgcattccac tcactttggc agtacccgcc taaagacact tgccagaggg      3120
     tacgtttggt gggaacggat tgacagggat attgaagatc tggtgaagaa ttgtgcttcc      3180
     tgtcaggtta cacgtccgaa tcctgcaaaa gcgccattgc actgctggga acctgctact      3240
     caaccgtttg aacgagtaca tgttgatttc gctgggccgt tcatgggcaa atattttatc      3300
     gtttttgtcg acgcctacac aaaatggcca gaggtgaaga ttctacggga cataactact      3360
     gctacgacta tcaatgcatg tagagagttc tttgcgactt acggaatacc ttgcgttctg      3420
     gtcagcgatc gtggggtgca gttcacctcc ggtgagtttc agcgatttct gcagttgaat      3480
     ggaattttcc acaaaatggg tgcgccgtac catccggcga ccaacgggca ggtcgaaagg      3540
     ttcattcaga ccttcaaaaa caaaatgaag gccatgaaat gtgacaaatc aagaatgcac      3600
     gtggaacttt gcaacattct cttgacttac cggaagacaa tccacccgac aaccggaaag      3660
     tctccttcca tgatgctctt taatcgacaa atccgatccc gacttgattt gatgctgcct      3720
     ggtccgacat tctcggagaa ggttgatcca aaagtccgaa ctattcccga gggaggaaga      3780
     gtcgctgcgc gagatttctt ggatcaggaa aaatggaaat atggtcgtgt gatagagaag      3840
     cttggaaagt tgcactacat ggtccagttg gacgacaatc gtgtatggaa gcgtcatatc      3900
     gaccaactac gagaagtggg accgcactta ccagctagtc gaaacctacg agagatgcca      3960
     gtattaccga accttccaca acaacccgca gctacttcga acgctacaag aggcaatgct      4020
     gtgccgattt atcaagaagc ctctacatct acggaaccag ttgctattcc agcaagttca      4080
     agagttgaac cagcctcggt gtcggtttct ggaccacgtc cgacattgag cgttccgtcc      4140
     acggttccat ctgcgagtaa gcctacaacg gagcgtgaac caagcgaagg gtcgtatcag      4200
     caaacgccaa gaagatcaac ccgtatggtg aaagctccta agagattgga tttgtaacgt      4260
     tgtaaaccat aaggggggaa gagc                                             4284
//
ID   Gypsy-92_AA-LTR repbase;    DNA;    INV; 235 BP.
XX
AC   supercont1.321;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-92_AA_;
KW   Gypsy-92_AA-I; Gypsy-92_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-235
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.321; Positions  720061  719827.
XX
SQ   Sequence 235 BP; 70 A; 57 C; 32 G; 76 T; 0 other;
     tgttatatat tttccgtgtc catatcaaac cattacctta attactactc tattacaata        60
     accttgaagt taacttgcct tgctcccccc aactataaca accttgttca ttcgccattg       120
     taattagaag aaaagtacac gtgaatacat tataaaacta tcggaaagta ttccggagtg       180
     ttttactgtt tcccggttcc gtaaaatacc ctcgcgagtg ctctcggtca caaca            235
//
ID   Gypsy-92_CQ-I repbase;    DNA;    INV; 1951 BP.
XX
AC   AAWU01007055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-92_CQ_;
KW   Gypsy-92_CQ-LTR; Gypsy-92_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1951
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 563-563 (2011).
XX
DR   GenBank; AAWU01007055; Positions   58543   60493.
XX
CC   'CAAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           216..1733
FT                 /product="Gypsy-92_CQ-I_1p"
FT                 /translation="MDSKQFAEFMGKFQEMIGSLKKAPAAPVERPAAVASV
FT                 PLPPPLELDGDMERNFDFFEESWKYYASAVGMDKWPEAQNEQKTSILLSVV
FT                 GTEALKKYFNFELTAVEKKDPKLALAAIKRKVVRERNKFIDWFDFFSLSQG
FT                 MEERIDDYLCRLKSQAKVCKFGVLEEDLLKYKLVTSIKWSKLRTKLLTMQN
FT                 LTEAQAVDFCRAEEIAEQHPISEQRNASVNKVKKHAKKCKFCGEMHDFTKG
FT                 SCPAFGKRCYRCDGKNHFEAVCKAERRKKLKRKSRVQKVLVDSSTDGDLTE
FT                 TESTSSESATIGKVSDGSGGHVEANLDMCIAGKWQSVQCELDTGANASLVG
FT                 HSWLQRMTGKAHSDLQPSKYRLHGFGGGEIPVIGQTTIRCRQYGRKYNLVL
FT                 QVVDVEQGPLLSAHVCRTLGFLEFGKMTRVNMPVSTKRSICRIEAQCAGCV
FT                 AGQDRQPTRTRHVRYRCDCTTGGPRQTQTDDPVRARRSTNGASCSLGRYTK
FT                 FSRLGESGST"
XX
SQ   Sequence 1951 BP; 517 A; 420 C; 564 G; 450 T; 0 other;
     tggtgtcaga agcactcgtg gactaaaggt gatttccggc gtcatttgaa atcgtggaaa        60
     gtgttcggcg aggaaaagtt cgatcgagcg acgaagaaaa tcatcagcgg aagtgatcgc       120
     gaagcagttg cgcagtgaag agcgaacttg tttgatcctg tccagcgcca tatttttctt       180
     taacgtcgtg tcgaggcgaa gtgttttccc acaaaatgga ttcaaagcag tttgccgagt       240
     ttatgggaaa gttccaggag atgattggat cgttgaagaa ggcgccggct gcgcctgtag       300
     aaagaccggc ggcagtggca tcggttcctc ttccgcctcc gctggaactg gatggagaca       360
     tggagagaaa cttcgatttt ttcgaagaaa gttggaagta ttacgccagt gcagttggga       420
     tggacaagtg gccagaggct caaaacgagc agaaaaccag catcctgctg tcggtggttg       480
     gaacggaggc tttaaagaag tatttcaact tcgaactgac tgccgtggag aagaaggacc       540
     cgaagctggc attggcggcg atcaagcgga aagttgtacg tgagcggaac aagttcatcg       600
     attggtttga tttcttctcg ctgtctcagg ggatggagga aagaatcgat gactacttgt       660
     gtcgattgaa gtcgcaagcg aaggtgtgta agtttggagt cctggaagaa gatttgctga       720
     agtacaagct cgttacgtcg atcaaatggt cgaagctgcg cacgaagctg ttgacgatgc       780
     agaatctgac ggaggcacaa gcagttgatt tttgccgcgc ggaggaaatt gccgagcagc       840
     acccgatttc cgagcaacga aatgcaagtg tgaacaaagt gaagaagcat gcaaaaaagt       900
     gcaagttttg tggcgaaatg catgacttca cgaaaggcag ttgtccagcg ttcggcaagc       960
     ggtgctatcg ttgtgacgga aagaaccatt tcgaagcagt gtgcaaggca gagcgtcgga      1020
     agaagctaaa gcggaagtct cgtgtgcaga aagtgcttgt ggatagcagt accgatggtg      1080
     acttgacgga gacggagtcg acgagcagcg aaagtgcaac aatcggaaaa gtttccgatg      1140
     gaagtggtgg gcatgttgaa gctaatctag acatgtgcat cgctggaaag tggcagtcag      1200
     ttcagtgcga attggataca ggggcaaacg ccagcctcgt gggacacagt tggttacagc      1260
     ggatgaccgg gaaagcccac agtgatcttc aaccgtcgaa gtaccgcctg catggctttg      1320
     gtggcggcga aattcctgtg atcggtcaga cgactatccg ttgtcgacaa tacggccgta      1380
     agtacaacct agtcctacaa gtggtcgatg ttgagcaagg tccgttgcta tctgcgcacg      1440
     tgtgtcgcac tttgggcttc ttagagttcg gcaaaatgac tcgcgtcaac atgccggttt      1500
     ctaccaagcg cagcatctgc cgcattgagg ctcagtgtgc aggttgcgtt gccgggcaag      1560
     atcgtcaacc aacaagaacg cgccacgtga gataccgctg tgattgtacg acaggcggcc      1620
     cgcggcagac gcagacggat gatccagtcc gcgcacgacg aagcacgaat ggtgctagct      1680
     gtagtcttgg ccgctacacg aagttttcga gacttggtga gtccggatcc acgtaatgaa      1740
     cccaacacgc ccaaggtaac ccaccaaatc tcgataccag tcatcaagct ttatgcctct      1800
     agcagtcaca catcatccga acaagctcca gtggtcttca gaaacatcca gcattttgtg      1860
     gtttagtttt aggtctttat ttttagttac acattaacct cattctcaag cacagttcta      1920
     tttagttttc tttttgataa aacagggaag a                                     1951
//
ID   Gypsy-92_CQ-LTR repbase;    DNA;    INV; 204 BP.
XX
AC   AAWU01007055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-92_CQ_;
KW   Gypsy-92_CQ-I; Gypsy-92_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-204
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 564-564 (2011).
XX
DR   GenBank; AAWU01007055; Positions   58339   58542.
XX
SQ   Sequence 204 BP; 53 A; 43 C; 30 G; 78 T; 0 other;
     tgttgtatta cgttatttat taccatgcca tagtttcgta gtttatggac agtccctaca        60
     aacgtcattc attcacgcgc gctttctctt tctttctcac ttttcattca ttctgtatcc       120
     gagtgccgag cagtacagtc gtgtcaataa acgttagttt gttaagttaa tcaaacttgt       180
     tttaattgac taccaaataa aaca                                              204
//
ID   Gypsy-93_AA-I repbase;    DNA;    INV; 6103 BP.
XX
AC   supercont1.368;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-93_AA_;
KW   Gypsy-93_AA-LTR; Gypsy-93_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6103
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.368; Positions  476350  470248.
XX
CC   Positions [3267-3764] - Reverse transcriptase
CC   Positions [5035-5478] - Integrase core
CC   'GGCGC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1688..2893
FT                 /product="Gypsy-93_AA-I_2p"
FT                 /translation="MANDQNRIDEEIVQVVQQNVSLFSPSSYNLPHFKYKH
FT                 LPPSEIRNSWVGWIRWFESIMAAWVGGLELQSAFYGIPGFDDIVPNHDPYQ
FT                 SAKEKLDQLFSPKHHDSFERFMFWTMTPEEDEAIDKFALKVQHKAAKCSFG
FT                 KSESESRNIAVVDKIIQFTPNDLRQKLLEKDILTLDDTLKVVNAYQSVRYQ
FT                 ASKMNPKNAISNSTSVNRLYDKPKPNNTVITNLRCIRCGYKRHYDKDRCPA
FT                 LNKTCLKCKKVGHFQSASRSKPPMNNASQDRKRKSAYPNNRDFGNSIKRPR
FT                 NIFNIDEANQRDPIFEDLPVYNVGDNDEELITCRVGGVDIVMLIDSGSKHN
FT                 LIDDTTWELMKLKDVQITNQRVDQEKRFLAYGRIPLKLITTFDATLEIDDG
FT                 DRYLFLIF"
FT   CDS           2931..4517
FT                 /product="Gypsy-93_AA-I_3p"
FT                 /translation="MMRSIIQVVKLYKISHLYRVLSTTTSFYVIEKGQQPL
FT                 MGKITAQSLGVLKIGLPSQNNVVDRVETKKEFPKIKGVSLSIPIDRSIPPV
FT                 IQPLRRCPIPLLQKVKSKLDELLEMGIIEKVTQPTSWVSPLVPIIKDNGEL
FT                 RLCIDMRRANQAVQRLNHPLPIFDDLSPKFRNARYFTTLDIKQAFHQVELN
FT                 ENCRDITTFVTNWGLYRYKRLLFGVNCAPELFQNLMESILASCRNTVVFID
FT                 DIMIFGSSEEEHDSCVKEVLKVLNQQGILLNDHKCNFKQRETVFLGHKLSA
FT                 DGIAPADEKVKSILQFRAPQTKEELRSFLGLVTYVAKFIPDLATVNSPLRN
FT                 LLRQETPFDWKAEHQQSFDKLKNQIGSVMNLGYFDPQDRTLVVTDASGVGL
FT                 GAVLIQFKGNQPRIICYASKSLSDVEKKYPIIEKEALGIVWSIERFKMYLM
FT                 GITFELETDHRPLETLFAITSKPTARIKRWILRVQAFKFKVVIVLIRSVSI
FT                 FFSLLTKKSVIVGCVQKRFSKPSRRTVTIKFSC"
FT   CDS           4549..5478
FT                 /product="Gypsy-93_AA-I_1p"
FT                 /translation="MYIRHIMVKAISTLSESENREIFDSNTECMIRTVQES
FT                 AALDIVEVITAAENDSEMQALKDCILSGKWSNEALKHYSAFQLEYSFVNGL
FT                 IMRGTKLVTPMTLRQRMCQLAHEGHPGQSMMKRRLRERCWWPGIDRDAVKF
FT                 CETCEGCRLVQIPDPPEPMARRQLPNKPWIDIAIDFLGPLPTGEYVLVVID
FT                 YYSRYMELEIMRKITAQETIKRLKRIFRTWGLPRTITLDNAKQFVSAEFED
FT                 FCKFSRIHLNHTSPYWPQANGEVERQNRSLLKRMRFLMRFTMTGRRNSISI
FT                 CSFIIIHRIRLQELHPVN"
XX
SQ   Sequence 6103 BP; 1976 A; 1086 C; 1364 G; 1677 T; 0 other;
     aattggcgac gaggtttcag aacccgaatt gaaaattgtg aatttattgt gagttggtga        60
     gaatcaaggt aataaaaatt acgacaaaaa gaaaaaatta aattttcaac taaccggttg       120
     tctaattcgt gcgtggcaaa gaagagcagc agaatggacg ggattgtggt tgaatggtgt       180
     gatcgattaa atacattaaa aaaaagaaaa aacaagttta tacctaatgt gaagaaaaat       240
     tgctgaagag tgattgggaa aaataaaaca aacggaaaaa gggaatgtgc gcagaaaaaa       300
     aaatacccaa gaaagcagcg tggcgtgatt ttttttttca tgctgctgaa aaaaccaagg       360
     tcataagtga cgtgaatgtg tgtgaaaggg tatccgcttg gcctcatagc ctccctgcca       420
     gtgttgttgc tctaagcatg tgtgaaagcg gtgggagtgt gaaagctgat gtgatgcgtt       480
     ggtttggtgt tggtggtttt cattcggttg cttgctgagc atccacagcc aaatcagaat       540
     aagtgagcgt tgtatttctt atccaattga acggtaatta tattttacac aaaggtgatt       600
     actgtcatga gtatgctgaa attaaaggta agtgatttta atgcaatttt aacaatgatg       660
     gccagctcca tacgacaatg gtttttaatt gttattttaa atcctgctat agctatttta       720
     aaaaggtttt caaatgccgt attgtattga aaagattatc tttgagttaa aaataataac       780
     tgtgtttcgc tcaaaagaga aagagattag ccggagagtt ttcgtcaata taatacgtat       840
     tcatttgaag aagtcaatga tgatggaatg aatcattgag aattggctgc gcatgcactc       900
     ttcgatgatg tgcctgtgca tgtgtaagta tagtgaaagc aagaaagtgc gctcttgaat       960
     ggtgcgcttg ttcagtgaaa acaaataaaa aaaaaacttg ctcttgaatg ttgcgagata      1020
     gagacccata cctatttgtt cgctcttcga tgatgcgtgt gactgtatga tagctggaaa      1080
     gctcttcaat gtgctaggaa aaagcttgcc tttggataat gtgtaggtgc gctcttggat      1140
     gatgcgtgtg tgttgattga aatgtagttc gacatgcttg aaagctcgct cttaagcgtt      1200
     gcgtaggtgc gctcttggat gatgcgtgtg tttcgattga aatgttgttt gacatgggta      1260
     cgaactgtat aaatagctct taaatgacgc ttgaaggtcg ctcttaaatg atgtgtaggt      1320
     acgctcttgg atgatgcgta tgtattgatt aaaatgttgt tcgtcatggt tacggactgt      1380
     atgaattgtt cttaaatgat gcttgaaagc tcgctattaa ataatgcgta ggtacgctct      1440
     tggatgatgc gtgtgtgttc gttggaaagt agggctgaat ggtttagaat gattatcact      1500
     tttgaatgat gtaaaataat accacaaatg catataatga aatgcaatgt tatgaaaact      1560
     aaattgatac aaacagagca aagctgcaaa gaatgtaatg tatgtgtgtg taacatgccc      1620
     ttataataaa ctgtgacgta caaggttgaa agttgatttt tttattaaca gcggcagtgt      1680
     tgtcagaatg gcgaatgacc agaatcgaat cgatgaggaa atcgttcaag tggttcaaca      1740
     aaatgtatcg ttgttcagtc cgtcatccta taatctacca cattttaaat acaaacattt      1800
     gccaccctct gagattcgta attcatgggt tggatggata cggtggttcg agagcattat      1860
     ggcagcatgg gtgggtggtc ttgaactaca gagcgcattc tacggcatac ctggattcga      1920
     tgatatagtc ccaaaccatg atccgtatca atccgcaaaa gagaaactag atcaactctt      1980
     ctctccaaaa caccatgata gttttgagag gttcatgttc tggactatga cccctgagga      2040
     agatgaggcg atcgataaat ttgctttaaa agttcagcac aaggctgcga aatgttcatt      2100
     cgggaagtcc gagagtgaga gtagaaacat tgccgttgtt gacaaaatta ttcagtttac      2160
     gccaaacgat ttaaggcaaa aattgctaga aaaggacatt ttgactcttg acgatacctt      2220
     gaaggtagta aatgcatacc aatcagtgcg ttaccaagca tcaaagatga accccaagaa      2280
     tgccatatcg aattccacaa gtgtaaatcg attgtacgat aaaccaaaac cgaacaatac      2340
     agtaatcacg aatctacgtt gcatacgatg cggctataaa cgccattatg acaaagatcg      2400
     ttgtcctgct ctcaacaaga cttgcttgaa atgcaaaaag gttggccatt tccagtctgc      2460
     cagtagatcg aagccaccaa tgaataatgc ttctcaagat cgtaaacgaa aatcagccta      2520
     tcccaacaac cgcgatttcg gcaactcaat caaacgtcct cgaaatatct tcaatattga      2580
     cgaggctaat caacgtgatc cgatttttga agatttacct gtctacaatg taggagacaa      2640
     cgacgaagag ttaataacat gccgtgttgg aggtgtagac attgtcatgc taatcgattc      2700
     tgggtcaaaa cacaatttga ttgatgacac tacttgggaa ctgatgaaat tgaaagatgt      2760
     ccaaattacc aaccaaagag tcgaccaaga aaagaggttt ctggcgtatg gaagaatccc      2820
     cttgaagctc atcacgacct tcgacgcgac attggaaatt gacgatggtg acaggtactt      2880
     atttttgata ttttagctca attaattggc tttgttgccc aacatcagac atgatgagaa      2940
     gtattattca ggtagttaaa ttgtacaaaa tttcacattt atacagggtg ttaagcacta      3000
     caacatcgtt ctatgtaata gaaaaaggac aacagcctct aatgggaaaa ataacagcac      3060
     aaagtctagg agtactcaaa attggcctgc cgagccaaaa caatgttgtg gacagagttg      3120
     aaactaagaa agagtttcct aaaattaagg gtgtcagtct aagcattcct attgatcgga      3180
     gtattcctcc ggtcattcag ccactgcgtc gttgtccaat accgttactt caaaaagtca      3240
     agtccaaact tgatgagctg ttggagatgg ggataataga gaaggtcaca caacccacat      3300
     cttgggtttc gcctctagtt ccaatcatta aagataatgg ggaactcaga ctgtgcattg      3360
     atatgcgaag agctaaccaa gcagttcaaa ggctcaatca tccactgccg atttttgacg      3420
     atctgagtcc gaaattccga aatgctagat acttcacaac gctcgacatt aaacaagcgt      3480
     ttcatcaggt ggagttgaat gaaaactgtc gagatataac cacatttgtt acaaactggg      3540
     gcttgtatcg ctacaaaagg cttctttttg gagtaaattg tgcgcctgaa ctgtttcaga      3600
     atctcatgga gagcatactg gcaagttgta ggaataccgt ggtgtttatt gacgatatca      3660
     tgatattcgg atcgtctgaa gaagaacacg acagctgtgt aaaggaagta ctaaaggttc      3720
     ttaatcaaca aggaatattg ctcaatgatc ataaatgcaa ctttaaacag cgagaaacag      3780
     tgtttctagg ccacaagctg tctgctgacg gaatcgctcc cgcagatgaa aaggtaaaat      3840
     caatccttca gttccgggca ccgcaaacaa aagaagaatt gagaagcttc ctgggtttgg      3900
     tgacatatgt agcaaaattc atacctgatc ttgcaacagt taactctcca ttgcgaaacc      3960
     tactgaggca agaaacaccc tttgattgga aagcagaaca ccagcaatcg tttgataagc      4020
     tcaagaacca gataggatca gtcatgaacc taggatattt cgaccctcaa gatcgcactc      4080
     ttgtagtcac agacgcttcc ggtgtagggt taggagcggt gcttattcag tttaaaggga      4140
     atcagcctcg tatcatttgc tacgcgtcaa aaagtctctc agatgtcgaa aagaaatatc      4200
     ctattattga aaaggaagcg ctaggaatag tttggtccat cgagcgattt aagatgtatc      4260
     tgatgggaat aacgtttgaa ttggaaaccg accaccgccc attggaaact ttgtttgcga      4320
     taacttccaa gccaacagca aggattaaac gttggatatt gcgcgtccaa gctttcaagt      4380
     ttaaggtagt tattgttctg ataaggtctg tttctatttt tttttctctt ctaactaaaa      4440
     aaagtgtaat tgtaggttgt gtacagaaaa ggttcagcaa acctagccga cgtactgtca      4500
     cgattaagtt ctcatgttga agatagtcat tgggttgatg attcagaaat gtacatacgg      4560
     catattatgg tcaaggcaat ctctacttta agtgagagtg aaaaccgcga aatcttcgat      4620
     tccaacactg aatgtatgat aagaacagtc caagagagtg cagctttaga tatcgtagag      4680
     gtcattactg cagcagaaaa tgattctgaa atgcaagccc tgaaagactg tattttgagt      4740
     ggcaaatgga gcaacgaagc tttaaagcac tactcggcat ttcagctgga gtattcattt      4800
     gtaaatggac ttattatgcg aggaacaaaa cttgtcactc ccatgacatt aaggcagcgt      4860
     atgtgtcagt tggcacatga gggacatcct ggtcaatcca tgatgaagcg taggttacgc      4920
     gaacgatgct ggtggcctgg catagaccga gatgctgtaa aattctgtga aacctgcgaa      4980
     ggttgtagat tggttcaaat tccagatcct cctgaaccaa tggcacggcg gcagttacca      5040
     aataagccgt ggatagatat cgcgatcgat tttctgggac cattaccaac cggagaatac      5100
     gtcttagtgg taatagacta ctatagccga tacatggagt tggagatcat gagaaaaata      5160
     actgcacaag aaaccatcaa aaggctcaaa agaatatttc gaacatgggg tttaccaaga      5220
     actattacct tggacaacgc aaagcagttc gtttcggcgg aattcgagga tttttgcaag      5280
     ttcagtagaa ttcatttgaa tcatacttcg ccgtactggc cgcaagccaa cggcgaagta      5340
     gaacgtcaaa ataggtcttt gttgaaacgg atgagatttc tcatgcgctt cacgatgact      5400
     ggaaggagga actcgatcag tatctgcagc tttataataa tacaccgcat acggttacag      5460
     gagttgcacc cagtgaattg attcagaacc ggaaagttcg aactaagttg ccacacatcg      5520
     atgatctaga aacgacacca tccagcactg agttcagaga tagagatatg gaacacaaga      5580
     tgcttggaaa agaacgggaa gatgctgtac gtaaagcaag gaccagtgaa ataaaagttg      5640
     gagatgtagt tctcatgaga aatcttctac caaccaacaa gctttcaacg aatttcatga      5700
     aagagaaatt cactgttgtt gacaagcaag gctctaacgt gacggttcag tctgatgata      5760
     ctggaaagac atatgatcgt aacatctcgc atctgaagct gattccttct tcatcgccgg      5820
     aagaagcaga aagtaaagca gaatccaaaa gaacagagtt gcaagatacg cgtcacacga      5880
     gaacttcaaa cttcgaacca ttgttaacat cgccaagctc gaaggttcgg cgttcgacaa      5940
     gagtagcaaa acctgtgcag aagttcaaca tatcaagata agtataagtt tcagaattga      6000
     tttgttttca tatactttga atcattttaa actataagta tagttaactt ttgttgaaac      6060
     aatataaatt tacaatacat aactttctac agggaaaagg gga                        6103
//
ID   Gypsy-93_AA-LTR repbase;    DNA;    INV; 191 BP.
XX
AC   supercont1.368;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-93_AA_;
KW   Gypsy-93_AA-I; Gypsy-93_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-191
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.368; Positions  470247  470057.
XX
SQ   Sequence 191 BP; 41 A; 49 C; 40 G; 61 T; 0 other;
     tgtggtagaa tgctcaatga atattagttc cttcttgcgc acttcgtatt cacccagctg        60
     ctgctggtat gaatgctatg cctaaatcac cgcctcagtt tatccccaac cttctactgg       120
     tgtgtttcgc tagtcccttg cagtgcttcg cgcgtggtgt gaaatctata agaatcaagg       180
     tcgttaccac a                                                            191
//
ID   Gypsy-93_CQ-I repbase;    DNA;    INV; 3988 BP.
XX
AC   AAWU01007335;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-93_CQ_;
KW   Gypsy-93_CQ-LTR; Gypsy-93_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3988
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 565-565 (2011).
XX
DR   GenBank; AAWU01007335; Positions    1042    5029.
XX
CC   Positions [3106-3618] - Integrase core
CC   'AGTC' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1411..3972
FT                 /product="Gypsy-93_CQ-I_1p"
FT                 /translation="MQRAVKERDVKHHILTKGPPVASKARRLAPDKLDAAK
FT                 KEFQLMSELGMCRPSSSPWASPLHCVPKKNGQLRFVGDYRALNKVTVPDRY
FT                 PVPHIHDLLNAFQGKSIFTTIDLERAYHQIPIDDEDVPKTAVITPFGLFEF
FT                 TTMQNGLCNAGQTFQRYMHRIFGDLGFVITFIDDICIASSSPQEHREHVKI
FT                 VFQRLRENGLVVNLSKCKFAQQQVEFLGYLIDKDGILPLPDRVQAVRQYEL
FT                 PTTVKQLRRFLALLNVYKHFIPQATDQQAELRALIPGNKKNDTRKVTWTDK
FT                 AEQAFEQCKKSLSDAALLYYVDPNKPLGLMIDASNSAAGAVLQQFVGGGWK
FT                 PLGFYSEKFSPAQQKYSTFGRELTAMKMAVRYFRHLLEGRTFTIFTDHNPL
FT                 THALTSNSPARLPHEDRHLQYISQFTQDIRHISGKDNVVADALSRVETIST
FT                 PTVINYADVAADQVGDSELQGLLQSPSLKFEQRPFTANGDRLYCDISVEGK
FT                 VRPYIPLPHRRRVLETMHGLSHSGVRATRRLVTDRFVWTSMNKDVADFVKC
FT                 CIHCQQSKIQRHTTAPVCRFDLPKSRFQHVHVDLVGPLPPSNGYRYLLTMV
FT                 DRYTRWPEAVPITDMTAETVARAFNSTWIARFGVPEKVTTDQGRQFESELF
FT                 RELNHLLGSEHLRTTAYHPQANGLVERFHRTLKAALMCTDPKRWADRLPLV
FT                 LLGLRTALKEDLNCSVAELVYGQQLRVPGEFFDAPKTELDRSDYAKEMHRV
FT                 FDELKPKDPQHHAKPKVFVQRDLKDCRFVFVRIDMVKKPLQRPYEGPFKVL
FT                 HRGDKCFDLLIKGKSQRVTIDRIKPAFIVEEDVEELKKTVVTPSGHRIRFL
FT                 V"
XX
SQ   Sequence 3988 BP; 977 A; 1113 C; 1055 G; 843 T; 0 other;
     ttggtgaccc gcgacgctga aaagaagtgg aaaatcgacc ccgacgaccg gtctccgcga        60
     aacttccagc gaaatcggat ttttttttct cgccgctcgc aaccgacgcc atcttggggc       120
     cctgactacg ccaccgctga atcagcagac caagatggaa gcgcaaacac agacaaacga       180
     gacaaacaat cctgccacct cggctgtcac cgcggcagtt gcagttaagc ttccagaatt       240
     ttggaagaac gacccaagga tgtggtttgc tcaagcagaa gcacagtttg ctctcgcggg       300
     tgtggtacag gacgaaacaa aatactacca catcatcagc aagctcgacc agactgtcat       360
     tatccaagtg gccgacatcg tgacagaacc cccaaaggaa aacaaatacc cagcagtgaa       420
     gggacggctg atttcgcgct acgaagtttc ggcccaagga aagttggagc agctgctgaa       480
     ctcttgcgac cttggggaca tgcggccatc tcatctcttg gcccgtatgc tggaactcgc       540
     agctggtttg aacgtgaacg aaagtgtgct gcgggtgctg tttatccagc gaatgccaga       600
     acgcgtcaag acaatcctgt cgatttgcga tggaaacacg ctgcagcaac tggcaaacat       660
     ggcagataaa atcaccgatt tttcaccgtc tgtcgtagcc gccacatctt ccgcagctgt       720
     acccgggctt agcgatctcc aggaccaaat cgctcagctt actgctgagg tacgtcggat       780
     gaagacttct gacggacgca gccgatcttc ttcccgaagc cgtcagtctg gtgccccggc       840
     ggacagcgtt tgctggtacc acaggaagta cggacgtaac gcacagcagt gccgtgaacc       900
     gtgcgtcttc aaggactcaa aaaactaggt tgcagttcac ctgaaacggc gaaggtgaac       960
     ggagcaacag aaagtcgccg cttactgctc aacgaccgct cgtccagttg ccgctatctc      1020
     atcgacacgg gatcggatgt ttcgatagta cctgcgacaa agaaggaccg cctcaaggga      1080
     ccgtcgtcgt tccgtttgca cgctgcgaat gggacggtga taaaaaccta cgactcccgt      1140
     ttcatcacga cagacttggg gctccgacgg cagtttcgtt ggaacttcat cgtagcggat      1200
     gtcagtgtcg ccatcatcgg agccgatttc ctcgcttttt tcggattgtt ggtggatctc      1260
     aagaacagcc ggctcatcga cgggaaaacg aacctacagt gtgtgggcgg cctctccgca      1320
     gctgaaattc acacggtgac aacagttgat tccagccatc cgttcaagga cttgctgctg      1380
     gagtaccgtg aaatcacgct gccgtctacc atgcaacgcg ccgtgaagga aagggacgtg      1440
     aagcaccata tcctgaccaa aggcccaccc gtcgcttcga aggctcggcg gctggctcca      1500
     gataaactcg acgcagccaa aaaggagttc cagctgatgt cggagttggg tatgtgtcga      1560
     ccatcctcga gtccctgggc cagcccgtta cactgcgtac ccaagaagaa cgggcagttg      1620
     cgcttcgtag gtgattaccg tgccctcaac aaggtaacag tccccgaccg gtacccggtc      1680
     ccccatatcc atgatctgct aaacgctttc cagggcaaaa gcattttcac cacgattgac      1740
     cttgagcgag cttaccacca gatcccgatc gacgacgagg acgtcccgaa gacggcggtg      1800
     atcactccgt tcggcctgtt tgaattcacc acgatgcaga acggcctgtg caacgcgggt      1860
     caaacgtttc aacggtacat gcacaggatc ttcggagacc ttgggttcgt gatcacattc      1920
     atcgacgaca tctgcatcgc gtcgtcgagt cctcaagaac accgagagca cgtcaaaatc      1980
     gtgttccagc gcttacggga gaatggactg gtggttaatc tctccaaatg caagttcgct      2040
     caacagcagg tcgaattctt ggggtacctc atcgataagg atggaatctt gccgcttccg      2100
     gaccgggtgc aggctgtgcg ccagtacgag ctgcccacga ccgttaaaca actccggcgg      2160
     tttttggcat tgctcaatgt ctacaagcat ttcatccctc aagcaaccga ccagcaagct      2220
     gaactccgag cgttgatccc agggaacaaa aagaacgaca ctagaaaagt gacctggacg      2280
     gacaaggcag agcaggcatt cgagcagtgc aaaaagtcgc tttctgatgc agcgttgctg      2340
     tactacgtag atcccaacaa gcctctcgga ctgatgatcg acgcttcgaa ctccgctgct      2400
     ggggcggtgc tacagcagtt cgtcggcggt gggtggaaac ctctcggctt ctattcggag      2460
     aaattttcgc ctgcacagca gaaatattcc acctttggcc gagaactcac ggcgatgaag      2520
     atggctgttc gatactttcg acatttattg gagggtagga cgttcacgat ctttaccgat      2580
     cacaaccctc tgacgcacgc gctgacgtca aactctcccg ctcgattgcc gcacgaagac      2640
     cgacacttgc agtatatttc gcagttcacg caggatattc gtcacatcag cggcaaagac      2700
     aacgtggtgg ctgacgcact ttcgcgagtg gaaacaattt caactcctac ggtcatcaac      2760
     tacgcagatg tcgcagctga tcaagttggt gacagcgaat tgcaaggcct gctgcaatct      2820
     ccgtccttga agttcgaaca acgtccgttc actgcgaatg gtgatcgatt gtactgtgac      2880
     atctcggtgg aaggtaaggt ccgtccgtac attccgctgc cgcaccgtcg acgtgttctg      2940
     gaaaccatgc acggcttgtc acactccggc gtccgagcca ctcggcgctt ggtaacggac      3000
     cgtttcgttt ggacttcgat gaacaaagac gtcgccgatt ttgtgaagtg ctgcatccac      3060
     tgccaacagt cgaagatcca acgtcacacc acggcgccgg tctgcaggtt tgacctaccc      3120
     aagagccgat tccaacacgt ccacgtggat ctagttggac ctctgccgcc gtctaacggg      3180
     tatcggtatc tgctgacgat ggtagaccgc tacacacgct ggcccgaagc tgtaccaatt      3240
     accgacatga cagctgagac agtagcgcga gccttcaact cgacgtggat cgctaggttt      3300
     ggagtgccgg agaaggtaac gacggatcaa ggacgacagt tcgaatctga actgtttcgc      3360
     gagctgaacc atctccttgg ttcggagcat cttcgtacca ctgcttacca ccctcaagct      3420
     aacgggttgg tagaacgctt ccacagaacg ctcaaggccg cgttaatgtg tacagacccc      3480
     aagcgctggg ctgaccgact accgttggtc ttgcttggtc tgcgaacggc cctcaaggag      3540
     gatctcaact gttctgttgc ggagctagtc tacggccaac agctacgagt tccaggagag      3600
     ttcttcgatg ctcccaagac ggagctggac cgcagtgact acgcgaagga gatgcatcgc      3660
     gtgttcgacg agctcaagcc gaaggaccca cagcaccacg ccaaaccgaa agttttcgtt      3720
     cagcgcgatc tgaaggactg tcggttcgtg tttgtacgaa ttgacatggt caagaaaccg      3780
     cttcaaaggc catacgaggg accgttcaaa gtactccatc gaggtgacaa gtgcttcgac      3840
     ttgctgatca aaggaaagag tcagcgggta actatcgatc ggatcaagcc agcattcatc      3900
     gttgaggagg acgtcgagga gctcaagaag acagtagtta ccccatctgg ccaccgcatt      3960
     agattcctgg tgtaactgga gggggcac                                         3988
//
ID   Gypsy-93_CQ-LTR repbase;    DNA;    INV; 211 BP.
XX
AC   AAWU01007335;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-93_CQ_;
KW   Gypsy-93_CQ-I; Gypsy-93_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-211
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 566-566 (2011).
XX
DR   GenBank; AAWU01007335; Positions     831    1041.
XX
SQ   Sequence 211 BP; 52 A; 64 C; 42 G; 53 T; 0 other;
     tgtggtggtg tcctgcccct gcgaacattt acacataaca cacacactta cacctacacg        60
     ttgccggctc agcacacccc tgttgcagac acacgcacac agatcatttg ctcattcttc       120
     tctgtgccgc gcaagagaca agtcgaataa aaagtagagt tttagtcggt gaactacgcg       180
     ttttattccc tgcggcgatt ccgttcccac a                                      211
//
ID   Gypsy-94_AA-I repbase;    DNA;    INV; 4805 BP.
XX
AC   supercont1.342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-94_AA_;
KW   Gypsy-94_AA-LTR; Gypsy-94_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4805
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.342; Positions  962015  957211.
XX
CC   Positions [2198-2698] - Reverse transcriptase
CC   Positions [3819-4289] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           617..3571
FT                 /product="Gypsy-94_AA-I_1p"
FT                 /translation="MALNGLTTMIEPYRKGSSFCDWVDRLAYCFQANAVSD
FT                 EMKKAHLITLGGTVLYSELKLLYPNGALDTAVYADIATKLKARLDKIEPDV
FT                 IQRVQFNSRIRQAGETLEDFVLALKLQAEFCGFGDFKNMAIRDRIVAGVND
FT                 KALQQRLLNEEKLTLETAEKIITTWQIAETNAKALGSRENSWDQIASLKMA
FT                 GANAVGTSMRKLARTYELARQDENSRGSVKNRLGYRQWPVRQGVYQRQPTD
FT                 WGKLRSLNTGEWRNPEHKRLSRFANFTCDYCGIKGHIKKRCFKLKNWKRMN
FT                 MVEDQQAPAVDEDLHDMINRMTTKDSDTEDDDMDVGESENEEIECMNITSI
FT                 NKINNPCLLELTIEGKLLSMEIDCGSAVTVINKRQYFSLFDKPLQKCNKNL
FT                 AVVNGSKLDVLGEAKVFVSFQGKEAILKLLVLDCCNNFIPLLGRPWLDVLF
FT                 PNWRIFFSNQVVINNMVIDNNEVLISDLKQQFSKVFVKDFSTPIVGFQADL
FT                 VLKTEQPIFKKAYDVPYRLKDKVDDYLDRLEREKVITPIQTSQWASPVIVV
FT                 IKKNNQIRLVIDCKVSINKMIIPNTYPLPTAQDLFAKLAGCKLFCALDLEG
FT                 AYTQLELTDRSKKCMVINTTRGLYTYNRLPQGASSSAAIFQQIMDQILHGI
FT                 DGVYVYLDDVLIAGKNFEDCLSKLRIVLAKLSKANIKVNLDKCRFFVELDY
FT                 LGHVISEEGLKPCPDKISTIKNANVPKNVSELKSFLGLINYYQKFIPHLST
FT                 KLFHLYNLLKKDVKFVWNSNCSKAFEDSKNALLATDLLEFYDSNKPLVIVS
FT                 DASGYGLGGVIAHVIDGTEKPISFTSFSLDKCQKSYPILHLEALALVCTIK
FT                 KFHKYLYGKKFFVFTDHKPLVGIFGKEGRNSIFVTRIQRYVLEQSIYDFEI
FT                 RYRPSSKMGNADFCSRFPLPQSIPNELHTDFVKSLNFSKNVPLDHEKIANA
FT                 SKNDEFMCKVISFMKHGWPDRLNKRFCEST"
FT   CDS           3687..4805
FT                 /product="Gypsy-94_AA-I_2p"
FT                 /translation="MKRLARQSVYWFGINSQIEEFVKKCDVCNSMASILKQ
FT                 KIDSEWIPTTRPFSRVHVDFFHFSSHTFLLIVDSYSKWVEVEWMKTGTECG
FT                 KVLKKLVTFFARFGLPDVLVSDGDPPFNSFAFTLFLENQGIKVLKCPPYHP
FT                 ANNGQAERFVRTVKDVLKKFLLEPEHCELELEDQINLFLINYRNNSLTADG
FT                 HFPSERVFAYPPKTLIDLLNPKKHYRKFLLKPAKTSNEDNLLEVVSRTKRK
FT                 NPLDDLMEGDVIWYQNHKPNHPAKWLEATYLKQISQNLFQVLIGNVVATVH
FT                 REQIRTSGGSDREMCPNVVLTKQRAIDVTDGPGNCVSESLSDDVNKNRSDK
FT                 YYQEEKFSGKRKKPADWVDEPPRRSKRTLF"
XX
SQ   Sequence 4805 BP; 1538 A; 815 C; 1052 G; 1400 T; 0 other;
     caagttgacg acgaggcaac cggacatcaa tacaccgtag ccgtaagtaa atgctgtcag        60
     ttgtgaggca gctcagttga attgtagacg gcttggtgaa cggtgcgaaa cgcgtgcaat       120
     cggcaaaacc tccttttaac cggcgattgg tgagcgtcca gacggaaagt ttacggaagt       180
     tattttttat tctcaaaaga aaattcgacc gtggttcttt tcgggtgttt caaattgagc       240
     tggtttggaa ataaaagcat cagtgagcat ccatcaagct acggagggca cacagcccca       300
     cgcaaattca gtagtgaaaa tacgacatca ggatcggtct ttgtgattgt agcgccaagg       360
     agggttcaac gtagttgagt ttaccagctt tggttgaccc agcatctttt cgaacgagat       420
     aaccagaagg atcgttcaac cagtatcaac atcaaggcca ttgaccttag ttggttcatc       480
     gaccggttgg aacgcaagtg agtgagcagt aaattgtgtt ttaccaattg tgtaatttac       540
     tccattttgg ggtctttatt ggtgcctttt gttagtatcc ttttatttga attttagatt       600
     gttattcttt ctaacaatgg cgttaaatgg attgactact atgattgagc catacagaaa       660
     aggctcttcc ttttgtgatt gggtagaccg gcttgcctat tgctttcaag ccaacgcagt       720
     ttccgacgaa atgaaaaaag ctcatttgat aacattaggg ggaacagttt tgtattccga       780
     acttaaatta ttatatccta atggggcttt agataccgct gtgtatgcgg acattgcaac       840
     caaattgaaa gccaggcttg acaaaattga acctgatgtg attcagcgtg tccaatttaa       900
     ttcccgaatt agacaagctg gtgagacttt ggaagatttt gttttagccc tgaagcttca       960
     ggctgagttt tgcggcttcg gcgatttcaa aaatatggca ataagagatc gcatcgtagc      1020
     tggcgttaat gacaaagccc tccaacaaag gcttctaaac gaagaaaagc tgacgttgga      1080
     gacggctgag aaaattataa cgacatggca aattgccgaa actaacgcta aagctttggg      1140
     aagtcgggaa aacagttggg atcaaatagc ctctttgaaa atggcaggtg ctaatgcagt      1200
     tggaacttct atgaggaaac ttgctagaac atatgagctg gcaaggcaag acgaaaattc      1260
     cagaggttct gtaaagaatc gattaggata tagacaatgg ccagtacgtc aaggggttta      1320
     ccaaagacaa ccaactgatt ggggtaaatt gaggtcattg aacacaggcg aatggcggaa      1380
     tccagaacat aaaagactat cgcgctttgc caacttcaca tgtgactact gtggaattaa      1440
     gggtcatatt aaaaaacgat gctttaaatt gaagaactgg aagagaatga acatggtgga      1500
     ggatcagcaa gctccagcag tggatgagga tttgcatgac atgatcaata gaatgaccac      1560
     caaggactcg gataccgaag acgacgacat ggacgtaggt gagagcgaga atgaagaaat      1620
     tgaatgcatg aatattactt ctattaacaa aattaataac ccttgtttgt tggagctgac      1680
     tattgaaggc aaattactta gtatggaaat cgattgtggg tcggcggtga ctgtaataaa      1740
     taaacgacaa tacttttcgt tgtttgacaa acctttgcag aagtgcaata aaaatttggc      1800
     tgttgttaat gggtccaaac tagacgtgct tggtgaagcg aaagtttttg tcagttttca      1860
     aggaaaggaa gcaattttga aacttttagt gctagattgt tgcaataatt ttattccatt      1920
     attgggtcga ccttggctgg acgttttgtt ccctaactgg cggatttttt tttctaatca      1980
     agttgtgatc aacaatatgg tcattgacaa taatgaggtg ttgattagtg acttgaaaca      2040
     acagttttct aaagtttttg ttaaggattt ttcgacacct attgtaggct ttcaagctga      2100
     tctagtgttg aaaacggaac aaccaatttt taaaaaagcc tacgatgtac catacagatt      2160
     aaaagacaag gttgatgatt acttggatag actagaaagg gagaaggtta taacaccaat      2220
     acaaactagt caatgggctt ctccggttat cgtggtaatt aaaaagaaca accaaataag      2280
     acttgtaata gattgcaaag tttcaataaa taagatgata ataccgaata cttacccttt      2340
     accaactgca caagatttgt ttgcaaaatt agcaggatgt aaattgtttt gcgctcttga      2400
     ccttgaaggt gcatacactc aattagaatt gacagatcgt tccaagaaat gtatggtcat      2460
     taatacaaca agaggtttat atacttacaa tcgactacct caaggagctt catcaagcgc      2520
     tgccatattt cagcaaataa tggaccaaat attacatggt attgacgggg tttatgttta      2580
     tctagatgac gtactgattg cgggaaaaaa ctttgaagac tgtctttcta aattgcggat      2640
     agttttagcg aagttgtcaa aggcaaatat taaagtaaat ttagacaaat gcagattttt      2700
     tgttgagttg gactatcttg gtcatgttat tagcgaagaa ggtttaaaac catgtcccga      2760
     caagatttct acaataaaaa acgcaaacgt gccaaaaaat gtaagtgaat tgaaatcttt      2820
     tttgggtttg attaattatt accaaaagtt cattcctcac ctctctacaa agctgtttca      2880
     tttgtataat ctattgaaga aggatgtaaa atttgtttgg aatagcaatt gcagtaaagc      2940
     gtttgaggat tctaaaaatg cacttttggc aacagatctg cttgaatttt atgactcaaa      3000
     taaaccactt gttatagtct ctgatgcatc agggtatgga ctagggggtg tcattgccca      3060
     tgtaatagat ggaacagaaa agccaataag ttttacctcg ttttctcttg ataaatgtca      3120
     aaaatcctac cccattttgc atctggaagc tcttgcattg gtctgtacta ttaaaaaatt      3180
     tcacaaatat ctctatggga aaaagttttt cgtttttaca gatcataaac cattggtagg      3240
     aatatttggt aaagagggac gaaattcaat atttgtcaca agaatacaaa gatatgtttt      3300
     ggagcagtcc atatacgact ttgagatccg ctatagacct tcgtctaaaa tgggaaacgc      3360
     agatttttgc tcccgttttc ctttgcctca gtcaatacca aatgaattac atacggattt      3420
     tgtaaagagt ttaaacttca gtaaaaacgt accgctggac catgaaaaaa ttgcaaatgc      3480
     ttccaaaaat gatgaattta tgtgtaaagt tatttctttc atgaaacatg gttggcctga      3540
     tagattgaac aaacgttttt gcgaatcaac atgaattgga gatagtagat gaatgtttat      3600
     tgtatcagga tcgcgtggtc atcccagcgg tattacaacc gcatgttctg aatctcttac      3660
     atggtaacca cgcaggaatt gtaaaaatga aaaggttagc aaggcagtcc gtttattggt      3720
     ttggcataaa ctcgcagata gaggaatttg tgaagaaatg tgatgtgtgt aacagtatgg      3780
     catccatttt gaaacagaaa attgattcgg aatggattcc cacaacaagg ccttttagca      3840
     gagttcatgt ggactttttc catttttcaa gccacacgtt tctattgatt gttgacagtt      3900
     actcaaagtg ggtggaagta gaatggatga aaactggcac tgagtgtgga aaagtcctca      3960
     aaaaattagt tacatttttt gccaggtttg gtcttccgga tgtgttagtt tcagacggag      4020
     atcctccatt caattctttt gctttcacac ttttcttgga aaaccaaggg attaaggtgc      4080
     taaaatgccc tccataccat ccagcaaaca acggtcaggc ggagcggttt gtgagaacgg      4140
     tgaaggacgt tttaaaaaag ttcttattag aacctgagca ttgcgaactt gaattggagg      4200
     accagattaa cttattttta atcaattata ggaataattc attaacggct gatgggcatt      4260
     tcccatccga aagagtgttt gcttatccac ctaaaacatt gatcgacttg ctgaatccaa      4320
     aaaaacatta taggaagttt ttactaaaac cagctaaaac ctctaatgag gataatctac      4380
     tggaggtcgt ttccaggacg aaacgaaaaa atcctctaga tgatctgatg gagggtgacg      4440
     tgatctggta tcagaatcat aaacccaatc atccagcaaa atggttggaa gcaacttacc      4500
     taaagcaaat ctctcaaaac ttattccagg ttctaattgg aaacgttgtg gccacggtac      4560
     acagagaaca gattaggacg tcaggaggtt cagacagaga gatgtgtcca aacgtggtgt      4620
     taacaaagca gagggcgatc gatgtaaccg atgggccagg caattgtgtt tccgagagtt      4680
     taagtgatga tgtgaataaa aaccgtagtg ataaatatta ccaagaagaa aagttttctg      4740
     gtaaaaggaa aaaacctgcc gactgggtgg atgaaccacc tcggcgttct aaaagaactc      4800
     tcttt                                                                  4805
//
ID   Gypsy-94_AA-LTR repbase;    DNA;    INV; 132 BP.
XX
AC   supercont1.342;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-94_AA_;
KW   Gypsy-94_AA-I; Gypsy-94_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-132
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.342; Positions  957210  957079.
XX
SQ   Sequence 132 BP; 32 A; 31 C; 21 G; 48 T; 0 other;
     tggttatcaa ctatcaactt attagctcgt gtttaaatta ttactctgaa ggaaagtcat        60
     ctctaaagga ttcatctcca tttcacttcg ctgattcatt tcgtccctgg attgtccccc       120
     ggctggatat ca                                                           132
//
ID   Gypsy-94_CQ-I repbase;    DNA;    INV; 7121 BP.
XX
AC   AAWU01007055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-94_CQ_;
KW   Gypsy-94_CQ-LTR; Gypsy-94_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7121
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 567-567 (2011).
XX
DR   GenBank; AAWU01007055; Positions   63224   70344.
XX
CC   Positions [5124-5600] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           431..2440
FT                 /product="Gypsy-94_CQ-I_2p"
FT                 /translation="MEHYIRQYFSMNLAHLLQDELDNELIVRNIDASSDSR
FT                 TVQERKCRAELKKERDLNLADIEYETGWDDILTELDVCNIKVHEISKILLD
FT                 RKEKSAPDQKYKTRLLHLLFRLLRAKAHATDESVINTIGDIAGHAARLLGN
FT                 YFSLLSPHEEIRKAELEFASNSMREQLENLNKTPQEEDATPETSIRGGNLT
FT                 PEDSNNIKEKATNTTDLPNPQNSQQIAETEKLKNENTDLKNLLNDLFTHLQ
FT                 KIDKKIENLEAEKNNPPVNKNSTQFHNSGDLNLSDSQKPKFSYQGFLDWLV
FT                 KDQNLIEPNLKNSDQQDKPDPPKPTKNNNPEQEKNSFGKRFPIHKWKIRYD
FT                 GSDQGRQLNEFLKEVEFNARSEGFTKQELYNSAYHLFQGKARSWYMEINSN
FT                 DELETWENLVEELKQEFLPPDLDFYYERQAHMRKQRLNERFQDYFLDMTRL
FT                 FRNLTCPIDETKKFNMIFRNLRTEYKSAMLAAKIKTIPAMKSFGKYFDSIN
FT                 WQWYAKTDKDNNRGQRSGERQVNEIQSERRGPMNTNGNNYNNNRQWNKGEN
FT                 VKREFKIPNRPNSNFRNDRNETNTYKPQQQSSEKSTEKKPLQNSSKPDDVK
FT                 PGPSKNLNTLEKILKAYVPIRRGTCFNCHNFGHNFNQCKQPAQVFCEVCGF
FT                 PGFSTPDCPYCPTKNVMEAAQ"
FT   CDS           2440..3549
FT                 /product="Gypsy-94_CQ-I_1p"
FT                 /translation="MRQSSLVKLPESPPSNLDELETTHNILQHLGYAHVST
FT                 ESRGAAEVNTIFLHPRGDNRPFIRINLLGVELVALLDSGANRNILGKGSHK
FT                 LVASLNLSCSPSDMTLITAEGHPVEVMGEIEIPVTFNGCTRIVSFVVAPTL
FT                 KRKCYLGMSFWDQFGIFPSLRESFIETIDDSEEPTDDEVLLTPEEQTELDE
FT                 IKKLFLVPRTGDIGCTSLLTHTIEISDEYKDKPPIRQNPYPWSPMVQSKIG
FT                 IALDNMIRDDIVEPSRSEWSQPVVPVSKRDSDAVRLCLDARKLNERTKRDA
FT                 YPLPHQNRILSRLGSCKYLSTIDLSQAFLQIPLSEESRKFTAFSIPGRGLF
FT                 QFKRLPFGLLIRGAPWYKVKLELLWIT"
FT   CDS           3513..5972
FT                 /product="Gypsy-94_CQ-I_3p"
FT                 /translation="MVQSKIGIALDNMIRDDIVEPSRSEWSQPVVPVSKRD
FT                 SDAVRLCLDARKLNERTKRDAYPLPHQNRILSRLGSCKYLSTIDLSQAFLQ
FT                 IPLSEESRKFTAFSIPGRGLFQFKRLPFGLANSPASLSKLMDKVLGFGELE
FT                 PNIFVYLDDLVVASKSFEEHKQHLTELARRLGEADLRINIEKSKVCVPELP
FT                 YLGYILSKDGLRPNPDRVHAIVAYEVPKSVRALRRFLGMANYYRRFISHFS
FT                 ELTAPLTDLLKNKPKKVEWSAEANRAFRAIKERLISAPVMANPDFGLPFTV
FT                 QTDASDHAIAGVLTQIQNGEEKVIAYHSEKLKGAELNYHATEKEGLAALRC
FT                 IEKFRCYIEGTEFTLVTDSSALTFIMRSKWKTSSRLSRWSIDLQQYHMLIK
FT                 HRKGKENIVPDALSRSLEVAEIADGSDWYSKLFASVKNDPENYLDFKIEEN
FT                 KLYKLVSSQSDVLDYSFDWKQCVPDSMREEILTKEHDDAFHVGYEKTVEKI
FT                 KKRFYWPRMAADIKRHVLNCDTCKRIKHSTTSVVPEMGNQRVTTRPFQILT
FT                 LDYIQSLPRSTKGNAHLLVLMDVFSKYCLLVPVRKISSGSVCEILEQLWFR
FT                 RLSVPQYLISDNATTFLSKEFQNLLKKYGIQHWASARHRSQANPTERLNRT
FT                 INAMIRSYVRDNQKLWDTRISEVEFVLNNTVHATTKFTPYRVIFGHEIVTK
FT                 GSEHRLQTMGELTDEERIEKMGNISTSIYDKVVHHLRKAHEVTKQRYDLRH
FT                 KRYAPTFDVGQRVYKRTFRQSSAGDHFNAKLGDVYEPCVVLAKKGTCAYEV
FT                 GDLNGKSLGVFSAGDLKA"
XX
SQ   Sequence 7121 BP; 2226 A; 1347 C; 1521 G; 2027 T; 0 other;
     tattggcgac caataaaaag ttaataacct cgttattatc ctttttggag gtaagcgagg        60
     gggggaaatt tgatggtact tattatcgga atcggttctc ggatcggtgt cggtgtttct       120
     gagaaatcca atctcttttt gctgctcaat taaaagtgta caactattag accggagtga       180
     atttgtctag cggtgctatt atagatcact ttaatggtga aacaattgat gattacacgt       240
     ggattgaagc tattgttctg aatactaaac ataaccttta cttagtcgat ttttcgctag       300
     atttaactat taaaaaacgt ctgtaaatta ttggccttta aatggattga atttcgtgca       360
     aattttcata atactttagt aaaattttct tttcattata tattttatat ttgtttgtgt       420
     aaattccaaa atggagcatt atattcgtca atactttagt atgaacttgg cacatttgct       480
     acaagatgaa cttgacaatg agttaattgt tcgtaatatc gatgctagtt cggattcgcg       540
     aacggtacag gaacgaaaat gcagggcaga gcttaagaag gagagagatt tgaacctcgc       600
     agatattgag tacgagacag gttgggatga tattttaaca gaactagatg tttgcaacat       660
     caaagttcac gaaatttcaa aaattttgct agacagaaaa gaaaaatctg cacctgatca       720
     aaaatataaa actcgattgt tacatctttt gtttcgttta ttacgagcga aagctcatgc       780
     gacagatgag tcagtaatta acaccattgg tgacattgct ggtcatgctg caagattgtt       840
     gggaaattat ttttcattgt tgtcaccgca cgaggaaata cggaaagctg aacttgaatt       900
     cgctagcaat agtatgcggg aacaactaga gaatttaaat aaaactcctc aggaggaaga       960
     tgccactcct gaaacaagta ttcgcggagg taacctaact ccagaagata gtaacaacat      1020
     aaaggaaaaa gccacaaata cgacagactt accaaaccca cagaactcac aacaaatagc      1080
     tgaaactgaa aagttgaaaa atgagaatac tgacttaaag aatttattga atgatttgtt      1140
     cacacatctt cagaagatag acaagaaaat tgagaattta gaggcagaga aaaacaaccc      1200
     accagtaaac aaaaatagta cccaatttca caattcaggg gacttaaact tgtctgattc      1260
     acaaaaaccc aaattctctt accaaggatt tttggattgg ttagtgaaag accaaaattt      1320
     gattgagcca aatttaaaga attctgatca acaagataaa ccagacccac ccaaacccac      1380
     caaaaacaac aatccagaac aggaaaaaaa ttcgtttgga aaacgtttcc ccattcacaa      1440
     atggaagatt cggtatgatg gatctgatca aggtcgtcag ctgaatgaat ttcttaaaga      1500
     agtggaattt aatgctagat ctgagggatt caccaaacaa gaactttata attcagccta      1560
     tcatttgttc caaggcaaag caagatcatg gtacatggaa ataaactcca acgatgaact      1620
     tgaaacgtgg gaaaacttag tcgaggaact gaagcaggaa tttcttcctc cagatcttga      1680
     tttttactac gaacgtcaag ctcacatgcg caagcagagg ctaaacgaac gttttcaaga      1740
     ttattttttg gacatgaccc gacttttcag aaacctcact tgtcctattg atgagactaa      1800
     aaagttcaac atgatttttc gcaatcttcg tacagaatac aaaagtgcaa tgttggctgc      1860
     aaaaattaaa actatcccag caatgaaatc gttcggcaaa tattttgatt ccatcaactg      1920
     gcagtggtat gcgaagactg ataaggataa caatagaggt caaagatctg gggaaagaca      1980
     agtaaatgag atccaaagtg agagaagagg cccgatgaac actaacggca acaattacaa      2040
     caacaatcgt cagtggaaca agggagagaa cgttaagaga gaatttaaaa tcccaaaccg      2100
     accaaattcg aattttcgaa atgaccgaaa tgaaaccaac acttacaaac ctcaacagca      2160
     atcgtctgaa aaatctactg aaaagaaacc attgcaaaat tcttcgaaac ctgatgatgt      2220
     gaagccaggt ccaagcaaaa atttgaatac tttagagaag attttgaagg cgtatgtccc      2280
     gataaggagg ggaacatgtt ttaattgcca caattttggg cataatttca atcaatgtaa      2340
     acagccagcg caagttttct gcgaagtttg tggatttccg ggattttcta cacccgattg      2400
     cccatactgt cccacaaaaa acgtgatgga ggctgctcaa tgaggcagag tagtcttgtg      2460
     aagttacctg aaagtcctcc gagtaattta gatgaactcg aaaccaccca caacatcctt      2520
     cagcatttgg gatacgccca cgtgtcaaca gaatctcgtg gggctgcgga agtcaacact      2580
     atttttctgc atccacgcgg tgataaccga ccgttcatac gtatcaatct gctaggagtt      2640
     gaattagtcg cacttttaga tagtggcgcg aaccgaaaca ttttgggtaa gggatcacac      2700
     aaactagtcg cgagtttaaa cttgagctgt tcaccatcgg acatgacgtt gataactgca      2760
     gaaggacatc cagtcgaggt gatgggagag atagaaattc cggttacttt taacggatgc      2820
     acgagaatcg tttcttttgt tgtcgcgccg accttgaagc gtaagtgcta tctcggaatg      2880
     tctttttggg atcaatttgg aatctttccg tcgctccgag agtcgtttat cgaaaccatc      2940
     gacgattcgg aggagccgac agatgatgaa gtactgttga ctcccgaaga gcagaccgag      3000
     ttagacgaaa ttaaaaagtt atttttagtg cccagaactg gagacattgg atgtacttct      3060
     ctgctgacgc acacaattga aattagtgac gaatacaaag ataaaccacc aatacgacaa      3120
     aatccttatc cgtggagccc catggtacaa agtaaaattg gaattgcttt ggataacatg      3180
     attagagacg atattgttga gccttctcgt tcagaatggt cgcaacctgt tgtaccagtt      3240
     tctaaaagag acagcgatgc tgtacgcctc tgtctcgacg cgagaaagtt gaatgagcgc      3300
     actaagcgtg atgcttatcc acttccgcat caaaatcgca ttctgagcag attaggttca      3360
     tgcaaatatt tgtccacaat tgatcttagc caagcatttc tacagattcc acttagtgaa      3420
     gaatctcgta aattcactgc tttttctatc cctggacgtg gtctgtttca atttaaacga      3480
     ctaccgttcg ggctccttat ccgtggagcc ccatggtaca aagtaaaatt ggaattgctt      3540
     tggataacat gattagagac gatattgttg agccttctcg ttcagaatgg tcgcaacctg      3600
     ttgtaccagt ttctaaaaga gacagcgatg ctgtacgcct ctgtctcgac gcgagaaagt      3660
     tgaatgagcg cactaagcgt gatgcttatc cacttccgca tcaaaatcgc attctgagca      3720
     gattaggttc atgcaaatat ttgtccacaa ttgatcttag ccaagcattt ctacagattc      3780
     cacttagtga agaatctcgt aaattcactg ctttttctat ccctggacgt ggtctgtttc      3840
     aatttaaacg actaccgttc gggcttgcaa acagtccagc tagtctcagt aaactcatgg      3900
     acaaagtgct aggatttgga gaattagagc ccaatatatt cgtatacctg gacgacctgg      3960
     ttgttgcaag caagtctttt gaagaacata aacagcattt aacggaatta gcgcgcagat      4020
     tgggcgaggc tgatttgcgt attaacattg aaaaatctaa agtttgtgtc ccggagttgc      4080
     cttatttagg ttacattttg tcaaaagacg gtcttaggcc caatcccgat cgggttcatg      4140
     cgatcgtggc ttatgaggtg ccaaagtctg ttcgagcgct gcgtagattt ctcggtatgg      4200
     ctaactatta tcgcagattt atcagtcatt tcagcgagct aacagcgcca ctcacagatc      4260
     tgctcaaaaa caaacctaag aaggttgagt ggtctgctga ggcgaatcgg gcattccggg      4320
     caatcaaaga aaggttaata agtgcaccgg tgatggcaaa cccggatttt ggtcttccgt      4380
     ttacggtgca aaccgacgca agcgaccatg caatcgcggg ggtgctcacc cagattcaga      4440
     acggggaaga aaaagttatt gcgtatcatt cagagaaact caaaggcgcg gaactgaatt      4500
     atcacgcaac ggaaaaggag ggtttggcgg ctttgagatg tattgaaaaa tttcgctgtt      4560
     atatcgaggg aacagaattc accttagtga ccgactcatc ggcactcacc tttattatga      4620
     ggtcaaaatg gaaaacatca tcaagattat cacgctggag cattgattta cagcagtatc      4680
     atatgcttat caaacaccgt aagggtaaag aaaatattgt gccagacgct ctctcacgat      4740
     cgttggaggt cgcggagatc gcggacggat ctgactggta ctcaaaacta tttgcttcag      4800
     tgaaaaatga tcctgaaaac taccttgatt tcaaaattga agaaaataaa ctttataaac      4860
     ttgtgtcttc tcagtccgac gtgttggatt actctttcga ctggaagcaa tgcgtcccag      4920
     attcaatgcg ggaagaaatt ttgaccaagg aacatgacga tgcgtttcat gtagggtatg      4980
     agaaaacggt ggagaaaatt aaaaaacgat tttattggcc ccgaatggca gcagatatca      5040
     agcgacacgt gttgaactgt gatacttgta aacgtatcaa gcattcaact acgtccgtgg      5100
     tcccggaaat gggtaaccaa cgggtcacga ccaggccatt ccaaatactc actctagact      5160
     atatccaatc cctaccgagg agtaccaagg gcaatgctca tcttttggtc ctaatggacg      5220
     ttttttcgaa atattgtctt ttggtccctg ttcggaagat cagttcgggt agtgtgtgtg      5280
     agattttgga acagctttgg tttaggcgtc tctcagtgcc acaatactta atttctgata      5340
     acgctacgac ttttttgtct aaagaatttc aaaatttgtt gaagaaatat ggaatacaac      5400
     attgggcaag tgcgagacat cgtagtcaag caaaccctac ggaacgacta aaccgtacga      5460
     ttaacgccat gattagaagc tacgtacggg acaaccaaaa attatgggat actagaattt      5520
     ccgaggtcga gttcgtattg aataatacag ttcatgcgac gaccaagttc acgccgtata      5580
     gggtaatctt cggccacgaa atagttacaa aagggtcaga acacagattg caaacaatgg      5640
     gtgaattaac ggatgaggaa agaattgaaa agatgggaaa tatcagtact tcgatctacg      5700
     acaaagtagt tcatcacctt cggaaagcgc acgaagtgac gaagcagcgt tacgacttga      5760
     gacacaaacg ttacgctccg acttttgatg ttggccagcg agtgtacaag cgaacgtttc      5820
     gtcagtcttc cgccggtgat cacttcaacg cgaagctagg tgatgtctac gaaccgtgcg      5880
     tagtcctagc gaagaaaggt acctgtgcgt acgaagttgg tgatttgaac gggaaaagtt      5940
     tgggagtgtt ctccgctggt gatttaaaag cttgaaccca gcacggatat gctgtgaaat      6000
     atgttggttg atgatttcag acgtggagag atgggagcga ccgccgtcaa ttatgtttgg      6060
     aggttgtaat cctgatcctg tcagctctgt ccatgccatg ttccacgaag aaagtcccgg      6120
     gcaaaccaaa atgggaattt aaaaggtacc ttaaacaaat gaaatttggt tttaaaatgt      6180
     tatttattta ttgttttgag attttgagtg aaatttaaat tgtttgtttg tgcattgttc      6240
     tgtgctacat tttatcgctt cttatggatc gtaaatcttc tttttgatct tatgagcgag      6300
     ttgttttcgg caaaggtcag tgtacccaac aaatgagatg gtgagccgtg agaagtcgga      6360
     tgaactttcc tataacacaa tagaatttat ctcacttttg agacaatgca atatgaccga      6420
     agtcttgagg acgctaattg cgttggaaat tgcctaggtt taacaaattt agttcttttt      6480
     ggcagttatg aacaccacac actaggattt tcaattaatt tgcacaaaat ttgattccct      6540
     tttctttaag aaagtttcta cgaagatttg aactgtgtaa atgatcttgg ccaatcattt      6600
     agcaccaaaa ttatagtttg tcttcgtgtt tcgcgaaagt aacttttctt aaagtggact      6660
     gaatcgaccc acatgaaagc gaacacaact tgtaaacttc acacaaaaac caaaatcgtt      6720
     atttggaatt ttcacgattt gctcagttta tcacgagaac agcgcgcgat tttgcaattt      6780
     tcccttggtt tttccaagat ggatccaatt tttatcatat gctccggagc gattaaaata      6840
     tatttgtagt ttgtattcat ttatttaatt gtagtttatg tcgtatttaa tttgttatgt      6900
     ttagttttga acgcattctt tcatgatgtt gttcatggtt gttaactgtt tttgatgtat      6960
     ttataatagt aacgctatcg ttcatttttg ttctctggtt gtacacagtt tgatcagtat      7020
     tttgttgaat ggtacaggtg cgacattctg ctaatagtca gaaggtttcc ttcaaaaaaa      7080
     atattgtgat ccaatatttt tttccccgag cggtgcggta g                          7121
//
ID   Gypsy-94_CQ-LTR repbase;    DNA;    INV; 1112 BP.
XX
AC   AAWU01007055;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-94_CQ_;
KW   Gypsy-94_CQ-I; Gypsy-94_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1112
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 568-568 (2011).
XX
DR   GenBank; AAWU01007055; Positions   62112   63223.
XX
SQ   Sequence 1112 BP; 307 A; 299 C; 290 G; 216 T; 0 other;
     tgtgaccaaa cggtttgttt cgtccacgct ttcaccaggt tcaaccagta tgtcccgggg        60
     ttttctcatt aaaaacggga aggtagacca caatgctaat aagctagata gggaaactaa       120
     ggtagatcaa cccgaaaacg tccaaataaa gcccaaaaat caaccaataa cccaaaacaa       180
     ttaaatatct gagctaaatc ttgcagaaag tcggcacaac ggtcatatca aacacacaac       240
     acacaattta ggtattgtac gcagccaaaa caacattaca cgcctcacta tgcccaccct       300
     gccactgaac tgcaaattgt gcgttctttg cgaagaacgc aaggcacggc taagtgctga       360
     gaggaggtcg aggcttcctg gaggaccttc tcagctagac tcgtccactt gtacgagagc       420
     cacaaaccga acaacacctg gaagttcgat cagcgaaaag tttacttata acccgcgacc       480
     gcgtggccga ttaagccaag tcttgcctag ttggcaatcg attcgccgta cgagttttgt       540
     aagtgatcta ccgtcacctg atcaccgagg ctgggcagcc tgtgcagccg tcaccatctg       600
     cacgaaccgg accgaaggtg tctaccggtg ttgcgctacg cgtgcggtcc gtcaacacac       660
     cgcccccatt gtgcccggta cacccggtcg aagcgaagca ggtccacgag cgacccaggc       720
     cagattccgg acgggaactg tgcgcagacg agcgagttgg agcagagcgg ttgagaagac       780
     cgcgaggaga ttcggagaac tatactccgg cgcgagaaac cacgtgtccc cgagggacac       840
     ggacactgcg ccggatcgag gaagcagcgc aggcgatcga gaccgctgcc agcaagcagg       900
     gtgcagcagt tcaaccaccg ggcccgtaca caccacacac acaaggttag ttggttaggt       960
     tgttaggagt agggaattag ggtcttgagg gctgaataaa cgtgccgcat taaggagagc      1020
     aaacatggtc ttttccttcc cctattgagc cgatcttggg atatttctgg gagtccttgc      1080
     gactgagcgg gcgtaactga ccgacagtta ca                                    1112
//
ID   Gypsy-95_AA-I repbase;    DNA;    INV; 5145 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-95_AA_;
KW   Gypsy-95_AA-LTR; Gypsy-95_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5145
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions 3664484 3659340.
XX
CC   Positions [2339-2716] - Reverse transcriptase
CC   Positions [3974-4444] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           740..5083
FT                 /product="Gypsy-95_AA-I_1p"
FT                 /translation="MAYVVAPNIEPYRKGQSFAGWMRRLTFHFRVNKIQDN
FT                 DKKDQMFMLGGDYLFSMAEKLYPTEALLDEVTYAELVQKLKERLDRTDSVL
FT                 LQRYHFGSKLQQPGETASDFVFTLKLQAEHCEFGDQKNRLILDRLLVGLTD
FT                 NNLKHRLLTEDSAKLTLDQAEKIITTWEMAATHTRALANNDGVGLVGFVNN
FT                 RYPVTGGRGAVLQRVRDLAQSYRGPVESRLGARPEIRPAEDCRQDSRVRFQ
FT                 RGSQSQQHRHRDPSAGSSNRRLQRGDEQWPIDQRYCSYCKRGGHVRRKCYK
FT                 MKNEMNSRVNHVETQEAESSTGSLSQLAERLDRLRSGNWDSDDNDSGELQC
FT                 MHVTSINKISDPCLLNISIENHTVQMEVDSGSSVTVMGKILYTSTFDLPLV
FT                 KSSKQLIVINGSRLKVSGEVGVRVKYNGKSANLTLLVLDCDYQFIPLLGRP
FT                 WLDEFFPNWRNFFANLMPLNNISVNQSEALIAEIKLNFSDVFVKDFSKPIK
FT                 HFEADLVLKTDIPIFKKAYDVPYRLREKVLKYLDKLEAEKVITPIQTSEWA
FT                 SPVVVVMKKNNDIRLVIDCKVSINKLIIPNTYPLPVSQDIFASLAGCKVFC
FT                 SLDLEGAYTQLSLSKRSRKFMVINTIKGLYTYNRLPQGASSSASIFQQVMD
FT                 QVLQGIENVCVYLDDVLIAGKDLKDCKAKLYKVLDRLSKVNIKINWDKCKF
FT                 FVTELEYLGHIISDKGLIPCSSKIATIREAKVPTNVTELKSFLGLINYYNK
FT                 FIPNLSSKLYHLYNLLKNDVKFLWDSKCNEAFENSKKLLLETDFLEFYDPE
FT                 KPIVVVTDASGYGLGGVIAHVVDEVEKPICFTSFSLNAAQKKYPILHLEVL
FT                 ALVCTIKKFHKYLYGQKFTVFTDHKPLVGIFGKEGKHSIFVTRLQRYILEL
FT                 SVYDFEIQYRPSAKMGNADFCSRFPLEVAVPSAYDQEFVKSINFGDNLPID
FT                 FSAIAEETKKDASLQKVMSFMLNGWPKRIDKQFVDIFTNRNDLEVVEECLL
FT                 FQERVVIPQVLQGDILKLLHGNHAGIVKMKRLARQTVYWFGINTNIERFVA
FT                 ACDICASMAIVPKQNITSKWIPTLRPFSRVHIDFFHFEHRTFLLIVDSFSK
FT                 WLEVEWMRKGTNTSEVLTKLIEFFARFGLPDVIVSDNGPPFNSHTFKSFLQ
FT                 KQGIKVLNSPPYNPASNGQAERLVRTVKDVLKKFLLEPGMLELKLEDQINL
FT                 FLFNYRNNNLTLEGSFPSEKVFAYSPKMLIDLVNPKKHYKQMLVPHNPNDE
FT                 AKGSQNENNDQTDQLDALIPGDLVWYKHNIPHLREKWIKASFLKRFSKNLL
FT                 QIMVGNEAITTAHPTQIRLVKEGSGSRQPRRSMRVVETGRSIPATAEPEGT
FT                 VVRDDDIRQLPERNTESEGAAFGETDVRQLPDLSDRERRRNNSAEIIERKS
FT                 RKRKFPSEPVELNGLLRRSKRTRKIISDNEFEYY"
XX
SQ   Sequence 5145 BP; 1554 A; 905 C; 1169 G; 1517 T; 0 other;
     gaaaagtggc gacgaggtta actggtgcgg cggagcattt ttcggcgtac tcggacggct        60
     actcggagca gcaacaccct ttcatctgcg attagtgcag cggcggtggt gctgatagga       120
     agtaattacg gtgagaacaa cacggtgcat agcataaatc ccaaggtaat aagggaaaaa       180
     gtgaggtgat aacgggggca aaaaggtgat ttcggtgaca atttgttcat tccggtgatg       240
     ttgacacgcc atttgctttt ggtggcgtag gctgtgtgaa agcataaaag acaattacca       300
     ttgttggttt tctttttatt tacttttttt ttgtgaaacg caaccatttt gttttgatta       360
     aatattaaca gtgctttcct ttttctattt tggaagataa atccacagcg ggcggcaatc       420
     cggttgtttt cgggtgctga aaggatcttc gctctagtgt acgagtggct gcagtttcct       480
     tcccgctggg tggcggacgg tttgatttct ctccccgctg ggtgccggac gattcatttt       540
     cttctcccgt cgggtggcga tcattaccca gcctgtaaat tgcggtgagc gtgacgtcga       600
     tcggtgagta atcattttgt ttttctatct gattttgaac attagactgg ttcaatttgt       660
     tttgcatatt ttttttgtga aaagtttaaa aagtttttaa aattagtgtt ttttattgtt       720
     ttgcttagat ttttgcaaaa tggcgtatgt agtggctcca aatattgaac cctaccgaaa       780
     aggccaatct tttgcgggat ggatgcgtcg gttaacgttc catttccggg taaataagat       840
     acaggacaat gataagaaag atcagatgtt catgctgggc ggggattacc tgtttagcat       900
     ggccgaaaaa ctttatccaa ccgaagcact tttggatgaa gtgacctacg ctgagctagt       960
     tcaaaagctc aaggaacgtc ttgatagaac tgattctgtt ctactacagc gttatcattt      1020
     tggctcaaag ctgcaacaac ctggtgaaac agcgagcgat tttgttttta ctttgaagct      1080
     ccaagctgag cattgcgagt tcggcgacca gaagaaccga ctcattttgg accgtcttct      1140
     ggttggcttg acggataaca accttaagca tcgccttctt actgaggaca gtgccaaatt      1200
     gacccttgat caagctgaaa agattatcac aacctgggaa atggcggcga ctcatacaag      1260
     agctttggcg aacaacgatg gtgtcggctt ggtaggtttt gtgaacaata ggtatcctgt      1320
     gactggagga agaggagcag ttcttcagcg agtgagggac ttagcccaga gctaccgtgg      1380
     cccggtggaa agccgacttg gtgcgcggcc agaaatccgg ccggccgagg attgtcgaca      1440
     agattcccga gttcggttcc agcgaggttc ccaatcccag cagcataggc accgagatcc      1500
     atctgctggc tcatctaatc gcagattaca gcgaggtgac gagcaatggc cgatagatca      1560
     gcgctattgt agctactgca aacgcggggg ccatgtacgg aggaaatgct acaagatgaa      1620
     gaacgagatg aacagcaggg tcaaccatgt cgaaacccag gaggcagaga gcagcaccgg      1680
     aagcttgagc cagctggccg agcgactaga ccggttgaga tctggtaact gggactccga      1740
     tgataatgat tcaggtgaat tacagtgtat gcatgttact tctattaata agataagcga      1800
     tccttgttta ttgaatattt ctattgaaaa tcacactgta cagatggagg ttgacagtgg      1860
     ctcttctgtt acagtgatgg gcaaaatttt atacacatcc acatttgatt tgcctctagt      1920
     aaaaagttct aaacaactaa ttgtgataaa tggttccagg ttaaaagttt ctggtgaagt      1980
     tggagttaga gttaaatata atggtaaatc agctaatttg acacttttag tgcttgactg      2040
     tgactaccag ttcattcctt tgctgggtcg accgtggttg gatgaattct ttcccaactg      2100
     gagaaatttt tttgccaatt tgatgccatt gaacaacatt tcagtaaatc aaagtgaagc      2160
     attaatagct gaaattaaac taaatttttc tgacgttttt gtcaaggatt tttccaagcc      2220
     aattaaacat tttgaagctg atttggtttt aaaaactgac attcctattt ttaaaaaggc      2280
     ttacgacgtt ccttatcgat taagggagaa agttttaaaa tatctggaca aacttgaagc      2340
     agaaaaagtg attactccta ttcaaaccag tgagtgggca tcacctgtag ttgttgtcat      2400
     gaagaaaaat aatgacatac gactagtaat tgactgcaag gtttcaatta ataagctcat      2460
     cattccaaat acttatcctt tacctgtatc tcaggatatt ttcgctagtt tggctggatg      2520
     caaggttttt tgttctcttg atttggaggg tgcatacaca caactatcat tatcaaagcg      2580
     atcaaggaaa tttatggtaa ttaacacaat caaaggactt tatacctaca atagattgcc      2640
     acagggggct tcctctagtg catctatttt ccagcaagtt atggatcaag tattgcaagg      2700
     tattgaaaac gtttgcgtct atttggatga tgtgcttatt gcaggaaaag acttaaagga      2760
     ttgcaaagct aaactttata aagttttaga cagattgtct aaagtaaata tcaagattaa      2820
     ctgggacaaa tgcaagtttt tcgtaactga attggagtat ttgggtcata ttataagtga      2880
     taaaggtttg ataccatgct caagcaaaat tgcaacaata cgggaagcaa aagttccaac      2940
     aaatgtgacc gaattgaagt cctttttagg acttatcaat tattataaca aatttatacc      3000
     caatttgtct tcaaaattgt atcacttgta caacttattg aagaacgatg ttaagttttt      3060
     atgggacagc aaatgcaatg aagcttttga aaattctaag aaattgttgc ttgaaactga      3120
     ttttcttgaa ttctatgacc ctgaaaaacc aattgttgta gtcacagatg catctggcta      3180
     tggtttgggc ggagtaattg ctcatgttgt tgacgaggta gagaaaccaa tttgtttcac      3240
     gtctttttcg ttaaatgcag cacaaaagaa ataccccata ttacatttag aagtacttgc      3300
     acttgtatgc acaattaaga aattccataa atatttgtat ggtcaaaaat ttacagtttt      3360
     tactgaccac aaaccattag tggggatttt tggtaaagaa ggcaagcatt caatatttgt      3420
     gacaagatta caacgctata ttttagaatt atcggtgtat gattttgaaa tccagtaccg      3480
     accttcagca aaaatgggca atgcggattt ttgttcgcga ttcccattgg aggtggcagt      3540
     tcccagtgca tatgatcaag agtttgtgaa aagcatcaat tttggggaca acttgcctat      3600
     agatttctca gctattgctg aagaaacaaa aaaggatgct agtttgcaga aagttatgag      3660
     ttttatgcta aatggttggc ctaaaaggat agacaagcaa tttgttgata tttttacgaa      3720
     tcgaaatgat ttggaagtcg ttgaggaatg cttgttattc caagaaaggg ttgtaatacc      3780
     acaagtattg caaggcgaca ttctaaagct tttgcatggc aaccatgctg gtatcgtcaa      3840
     aatgaaaaga ttggcaaggc aaacggttta ctggtttgga atcaacacaa atattgaaag      3900
     atttgttgct gcttgtgaca tctgtgcaag tatggcaatc gttccaaagc aaaacataac      3960
     ttcaaaatgg atacctacct taagaccatt tagcagggtg cacatcgact ttttccattt      4020
     tgagcatcgc actttcttgt tgattgtaga tagtttctct aaatggttgg aggtagaatg      4080
     gatgaggaaa ggtaccaaca cttcagaggt tttgacgaaa cttattgaat tttttgctcg      4140
     atttggtttg ccggacgtta tagtgtcgga caatggtccc cctttcaact ctcatacatt      4200
     caaaagtttt cttcaaaaac aaggcataaa ggttttaaac agtcctccat acaatcctgc      4260
     tagtaatggc caggcggagc gacttgttag gacggtgaaa gatgtgctca agaaatttct      4320
     attagagcca ggaatgttag agttgaagtt ggaagatcag ataaacttat ttttatttaa      4380
     ttatagaaac aataacttga cgttggaagg tagtttccct tctgaaaagg tgtttgctta      4440
     ttcgccaaaa atgttgatcg atttggttaa cccaaagaaa cactataagc aaatgctggt      4500
     accacataac cccaatgatg aagcaaaagg tagtcaaaat gaaaataacg atcaaactga      4560
     tcagttagat gcactgatac cgggggattt agtgtggtac aagcacaaca ttccacattt      4620
     acgcgaaaaa tggataaaag catccttttt aaaacggttc tctaaaaact tattacagat      4680
     catggttgga aacgaggcga taactaccgc gcatccaact caaatacggc tcgttaagga      4740
     agggagtggt tcgcgccagc cgagacgatc gatgcgagtg gtcgaaactg gtcggtcgat      4800
     accggctacc gctgaacccg aaggaacggt cgtgcgagat gacgatatcc ggcaattacc      4860
     ggaacgaaat acggagtctg aaggagcagc ctttggagaa accgatgtcc ggcaattacc      4920
     ggatctgagt gaccgtgaaa gaagaagaaa taatagtgct gaaataatag agcgtaagag      4980
     taggaaaaga aagtttccgt cggaaccggt agagcttaat ggcctactac ggcgttcgaa      5040
     aagaactaga aaaattatat cagacaatga attcgaatat tactaaatgc tatatttttt      5100
     aattattgaa ttattgttca atcttttgca agagggaaga actaa                      5145
//
ID   Gypsy-95_AA-LTR repbase;    DNA;    INV; 308 BP.
XX
AC   supercont1.1;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-95_AA_;
KW   Gypsy-95_AA-I; Gypsy-95_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-308
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.1; Positions 3659339 3659032.
XX
SQ   Sequence 308 BP; 91 A; 67 C; 61 G; 89 T; 0 other;
     tgtatactaa gcaacatctt gactgaatac actttagagt gtattcagtc atcaacaatc        60
     attagcgcga gcatacggct gcgcaagcgt aagcgtaagc gtatgcgcag cattgcaggc       120
     aacactgctg tcaaatgtat aaaagtaaat aaatcgagct gtctggctct cttctacttg       180
     aaacttcaaa caatcaacaa gtgttattaa gtctccagaa attcccttcc cgaaagtgat       240
     ttgttctacg ttggttcctc ccggttggtc gtagttaagt gaaattctct agttccggat       300
     actagaca                                                                308
//
ID   Gypsy-95_CQ-I repbase;    DNA;    INV; 4199 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-95_CQ_;
KW   Gypsy-95_CQ-LTR; Gypsy-95_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 569-569 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [3204-3662] - Integrase core
CC   'AACAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           465..2186
FT                 /product="Gypsy-95_CQ-I_1p"
FT                 /translation="MDKWDIPPFKFKALPWNEVRSEWIKYKRHFMYVVSAT
FT                 GERDRTRIKNIFLAKAGPDLQEVFSTIPGADVEGSRTVDPFEVAIEKLDNY
FT                 FAPKQHETFERNVFWTLRTSVGESLEKFMIRCTDQASKCNFGSTVEESRAI
FT                 SVKVILFAPSDLKEKLLQVKDLNIDEAAKIISSHESIKQQALAIGQGLSDD
FT                 SDATSNVNKIQNRPQRRPQPNCTRCGYSGHTSLDENCPARDRQCAKCKRQG
FT                 HFAVMCLTAPKRKFKIEAGPSKRWKPERIREVRENDDKPPENFIFNIGDQD
FT                 ELIWLRVGGVLLHVLVDSGCKKNIVDERSWKYLKENGVRASNQQTNCEEIF
FT                 LPYGSQAKPLTTVGKFDATVTIDDEGDTIEEPATFYVIKEGQQCLLGRTTA
FT                 TRLGVLRIGLPSTHGINAVGPKEKHPFPKISGVQVQIPIDESVTPICQHPR
FT                 RPPIALQSRIEDKIKALLAGDIIEPVEGGCQWVSPLVTVLKDNGDLRLCVD
FT                 MRRANTAILRERHIMPTIEDFLPRFTTAKYFSRLDIKEAFHQVRNNKKIYK
FT                 QRRTVYAQRVTPTHINIRWSLKRRAGT"
XX
SQ   Sequence 4199 BP; 1195 A; 1029 C; 1126 G; 843 T; 6 other;
     tatggcgacg aggtaaagta tacgctacta gtctttgaga ggggagagaa attcatgaga        60
     ttttcagcaa tttttatttt tggggaggga ttaacgaagc ttaccaaaag tgaggttaag       120
     aaaacaaggg agaaagtttg gctaacgttg cgggtttttt tcttttcaat tacagtcgag       180
     gccgccggag tggcccgagc ttgagctaaa agctcagtcg aaaagcaatc acaaaggtgg       240
     ttggcagtag tcccagctgc aaaggcagcc gagtttcgaa gccaccaagt tggcaagccc       300
     agtggcgtag ttcgcaaagg cgaccagcgg agaggtacaa ccccgaaagc aagcacattc       360
     cgcccgacgg aagtggagag tcgtcaaaca gaaaacggta cttattaggc aaattgattg       420
     atttacgaaa attctgataa gaattaattt cttcgcttta gaggatggac aagtgggaca       480
     taccaccgtt caaattcaag gccctgccgt ggaatgaggt ccggtccgag tggatcaaat       540
     acaaacgcca cttcatgtat gtagtttctg ctacggggga gagagacaga acgcggatca       600
     agaacatctt cctggcaaaa gccgggcccg acttacaaga ggtcttcagc acgatcccgg       660
     gagcagatgt cgagggttca aggacggtcg acccgttcga ggttgcaatt gagaaactgg       720
     acaactactt cgcaccaaaa cagcatgaaa cattcgagag gaacgttttc tggacgttac       780
     gaacatccgt gggcgagtcg ctcgaaaaat tcatgatacg atgcacagac caagccagca       840
     aatgcaattt cggaagcacg gtggaggaaa gtcgcgccat cagtgtcaaa gtgatactgt       900
     ttgcccccag cgacctcaag gagaaactcc tccaggtgaa agatctgaac attgatgaag       960
     cagccaagat catcagctct cacgaatcca tcaaacaaca agcgcttgca ataggccagg      1020
     gcctatcgga cgattcagac gcgacgtcga acgtcaacaa gatccagaat cggccgcaaa      1080
     gacggccgca accgaattgc acccgctgtg gctactcggg tcacacaagc ttggatgaga      1140
     actgtccggc tcgggacagg cagtgtgcga agtgcaaacg gcaagggcac tttgctgtaa      1200
     tgtgtctcac cgctccaaag cgaaagttca agattgaggc cggcccgagc aagcgttgga      1260
     aaccagaacg aatccgggaa gtcagggaaa acgacgacaa acctccagag aacttcatct      1320
     tcaacatcgg agatcaagat gagttgatct ggctgagagt gggtggagta ctgctccacg      1380
     tgttggtgga ctcgggatgc aaaaagaaca tcgtcgacga gagatcttgg aagtacttaa      1440
     aggagaacgg tgtccgcgcc tcgaaccagc agacgaactg cgaggaaatt ttcctgccat      1500
     acggctctca agccaagccg ctaactactg tgggcaaatt tgatgcgacc gttacgattg      1560
     atgacgaagg tgacacaatc gaagaacccg cgacgttcta cgtcatcaaa gaaggtcaac      1620
     agtgcctact tggtcgcacc actgccacga ggttgggagt actacgcata ggcctgccga      1680
     gcacgcatgg aataaatgca gttggaccga aagagaagca cccatttccg aaaatcagcg      1740
     gggtgcaggt ccaaattccg attgacgaat ccgtaacacc catctgccag cacccgcgtc      1800
     ggccgcccat tgcgttgcaa tctcggattg aagacaagat caaggcactc ctggcaggtg      1860
     acatcatcga accagttgaa ggggggtgtc agtgggtctc gccactagta actgtcctca      1920
     aggacaatgg agatctccgg ttgtgcgtcg acatgcgcag ggcgaacacg gcaatccttc      1980
     gggaacgaca catcatgccg actattgaag atttcctccc aagatttacg actgcgaagt      2040
     atttcagccg tctcgacatt aaggaagcgt tccaccaggt aagaaataac aaaaaaatat      2100
     ataagcagag acggacagtt tatgcacaaa gagtaacacc aacacacatt aatattaggt      2160
     ggagcttaaa gaggagagca ggtacataac cacgttcatc acccacgtgg gtcttttccg      2220
     gtacaagcgs ctcatgtacg gaatcgtgat cgcttctgag gtcttccagc gcatcatgga      2280
     gcaaatcctg agcccctaca gcaaaaacgt agtgaactat atcgacgaca tcctcatctt      2340
     tggtkcgacg gaaaaggaac acgacgacgt cctgcgggcg gtgctgaaca cgctgcacga      2400
     tcgaggaatc ctactsaacc aaggmaagtg tttgttcaaa acttccaagc ttcagtttct      2460
     gggccacgcg atctcttcgg aaggcattga accgtgcgga agcaaagtgg aagccctgca      2520
     gaatttccgg gccccgtcga cgccggagga agtacggagc tttttgggat tggtgacata      2580
     catcggccgc ttcctcccgg atcttgcaac ggttacggct ccacttcgtc agctgaccca      2640
     ttccggtgtt aaattcgwct ggggcaagga gcaacaggaa gccttcctgc tgctgaaggc      2700
     tatgatctca aacgtgaaat tgctatactt tttcgacaac tctttgagga caagagtgat      2760
     cgcggacgcg tcgccggtcg ctctgggcgc ggttttgatc cagttcggcg acgaaacaga      2820
     cgacttccct cgaccaatcg cgtatgcaag caagagcctg acagaaaccg agcgcactgt      2880
     caaaccgaaa aagaagcgct cgcgctggtt tggagtgtgg agaggttcac cgtttatctg      2940
     atcggacgaa gtttcgaatt agaaaccgat cacaaacctc tggaggcgat tttccagcct      3000
     acctccagac catgtgccag aatcgagcgc tggctgcttc gactccaatc tttcmggttc      3060
     cacgtcaagt atcggaaggg agcgggaaat attgccgatc cgctgtcgcg tctagttcag      3120
     cactcgtcat ctgaggattt tgacacggtc aaccagttca tgatacttgc agtatgccag      3180
     tcagtcgcaa ttgacatcca tgaactcgat caggctacca agtcggactc gatactagag      3240
     gcagtcaaac agtgtattcg caccggaaac tggtcgtcat cgactattac agtcgataca      3300
     aggaagtaga gctgatggcg aagataactg caaaggaaac ggtgcttaga ctcgacaaga      3360
     tcttcacacg gctggggtac ccacaaacga taacgctaga caacgccaag cagttcgtcg      3420
     gtgtagaaat ccaagagtac tgcaagacgc acggcatcta cctgaatcat tcggctccgt      3480
     attggccaca ggagaacggt ctagtggaga agcagaatcg atcgttgctg aagaggttga      3540
     agatcagcca cgccctgaat agagattgga agcaggatct acgggagtat ctggtcatgt      3600
     attacactac tccgcactcg accaccggaa agacaccaac cgaaatgatg tatggccgga      3660
     cgatccgctc gaagattccg gcgatcagtg atatcgatgg tgtcccgttg aacacagaag      3720
     aggccgatcg agatcgcatc ctaaaacaaa aagggaaaga gaacgaggac gcccgccgta      3780
     atgcacggag atcatctatc agcaccgggg acaccgtcct aatgcagaat cttctacctg      3840
     ggaacaagct gactacgaca ttcagtccga cggagtacac agtggtgtcg cgcgatggac      3900
     ctagggcgac gatccacgac tcgagcagcg gcaaatcttt tgaacgaaac gtcgcacacc      3960
     taaaacggat cggaaagcct gttgctgaag atgagttcac atgcgaggcc ggggctgtgg      4020
     agaactccgt tgacgtgcga gcgggggata tcggccacag caatccgatc gttggcgacg      4080
     aactccaagt atttgtggac agcgaggaac cggaaccgga acaaccgagg aagtcaatac      4140
     gaccgcttaa aaagccagcc agatgggctg actatgtttc ttcgtgaaaa aaggggaga       4199
//
ID   Gypsy-95_CQ-LTR repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-95_CQ_;
KW   Gypsy-95_CQ-I; Gypsy-95_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-188
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 570-570 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 188 BP; 54 A; 25 C; 66 G; 43 T; 0 other;
     tgtgggaact gagtacgtcc ctgacgtgct cgaggtaaga gagagagagg gagagcgtta        60
     gggggaactg tcagacacag gggggaagag gattgatcgg ataggagaac acgcggagaa       120
     taaacggcga tttggtatca gaaggtaatt gcttgtttca tttatttatt tgacggtcgg       180
     atagtaca                                                                188
//
ID   Gypsy-96_AA-I repbase;    DNA;    INV; 4381 BP.
XX
AC   supercont1.312;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-96_AA_;
KW   Gypsy-96_AA-LTR; Gypsy-96_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4381
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.312; Positions 1194816 1190436.
XX
CC   'CCATC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..2094
FT                 /product="Gypsy-96_AA-I_1p"
FT                 /translation="MATEHTDDGMEGAAGGHNSKSRGQDDSSTSPIVAAAM
FT                 SAAAAKIFNNNIPFPEPLVMTGNVRQNVDDFIEGFEIYLVASGLENREERV
FT                 KIATFKAALGVESRKIFNNWPLQAAEKDTVVACLASLRNYMMPKRNVKLAR
FT                 YEFLQCKQQPADGVNEEESAVQFINRARALVKDCNWGDLEEEMLRDVIVAG
FT                 LRDTRMKKAFIDKVELTAVDVINQCMSEEATKMELEKNKWLEEERHSVNKV
FT                 YSKRNKIKQCAYCGKGYHRNLQECPARGSTCFYCHQRNHFEAMCRKKQEDR
FT                 ELHRKNKTRSSKMVHKISDSESEESCAETELKEEIVDTVEYLYSIDQEHGG
FT                 LLKADLSFGTENKSKKVKCILDTGASCNVIGLPSLLEILDGKSVELDKQQP
FT                 VLKGFGGSSTRALGRATLDLRHNDKQYKSVFTVVDFRQIPILSMYSCLKLN
FT                 LLKLCLSVSAEHEVTAKNIVARYPGVFQGIGKLAGDVHLEVDHSVKPVVQP
FT                 ARRIPVTLREELKIQLDEMEKLQIISKVNEPTEWVSNLVLVKRNNKIRVCI
FT                 DPVVLNTALKRPHYPIPTVNELLPELSKAKIFTTVDAKSGFWQVQLDEESS
FT                 RLTTFWTPYGRYRWLRMPFGISPAPEIFQRKLHETTHGLKGVRVLADDG"
FT   CDS           2480..3424
FT                 /product="Gypsy-96_AA-I_2p"
FT                 /translation="MVLRAPVLKYFDVDKEVTIQCDSSSVGLGAVLLQEGQ
FT                 PVCYASKTLTPTERRYAQIEKETLAILYACRKFEMYIIGKDVTVQTDHQPL
FT                 LRIFKKPLIEAPMRLQRILLGLQRYKVKLLFKPAKEVVIADMLSRAALTES
FT                 DLTDRSIYDVYTMDMDFTLADYEAINSAEYIPISDFRLDQLRRASSEDPDI
FT                 QTIIRFIVDGWPLTIGELPERMRIYWKYKNEFYTQNGLVYRNNRILVPVSL
FT                 RSNILERLHTSHSGLEATMKLARDTVFWPGINDQIRQRIQSCYSCLKFAPN
FT                 QQREPMQTHQIPCYPYQKISLDL"
XX
SQ   Sequence 4381 BP; 1379 A; 882 C; 1050 G; 1070 T; 0 other;
     tggtgtcaga agtggctgag tatacgggaa aatggttgta gcaagtattt gtgattaccg        60
     tttgttgaaa caaccatagc gatcgaagga agataattgc tccgtgatag ttttgtgaaa       120
     ttcggaatca gtgcgaatta tcgggaaaaa aagatggcga ctgagcatac ggacgatgga       180
     atggaaggag ccgccggcgg gcacaacagc aaaagcagag gtcaagacga cagctctaca       240
     tcgcctatcg ttgcagccgc catgtcagca gccgccgcaa aaatattcaa caataacatc       300
     ccgtttcccg agccgctagt tatgacaggc aatgtgcgtc aaaatgttga tgatttcatt       360
     gagggttttg aaatctatct cgtcgcttcg ggtttagaaa accgcgagga gcgagtgaaa       420
     atagcaacgt ttaaagcagc tttaggagtt gaatctcgga aaattttcaa taattggccg       480
     ttacaagcag cggaaaaaga taccgtggtg gcctgcttgg cttcattgcg gaactacatg       540
     atgccgaagc gaaacgttaa gctagcgcgt tacgagtttc tacagtgtaa acaacaaccg       600
     gcagatggag tgaatgaaga agaatccgcg gtacagttta taaacagagc cagagcgctt       660
     gtgaaggatt gcaactgggg cgatcttgaa gaagaaatgt tgcgagacgt gattgtagcc       720
     ggccttcgtg atacccgtat gaagaaagcg ttcatcgata aagtggaact tacagcggtg       780
     gatgtcatca atcaatgtat gtcagaagaa gccacgaaga tggaattgga aaagaacaag       840
     tggctagaag aagaacgaca ttctgtgaat aaagtgtact caaaacgaaa caaaataaag       900
     cagtgtgcct actgtggtaa aggataccat cgcaatctgc aagagtgtcc agcaagggga       960
     agcacttgct tctattgtca tcagcgcaac cacttcgaag ctatgtgcag gaagaagcaa      1020
     gaagataggg aattgcacag gaagaacaaa acacgttcca gtaaaatggt gcataagatc      1080
     agcgactcgg aatctgaaga aagttgtgcg gaaacagagc ttaaggagga aattgtggat      1140
     actgtcgagt acctgtatag tatcgatcaa gaacatggcg gtttgttgaa ggcagacttg      1200
     agcttcggaa cagagaacaa atccaaaaaa gtgaaatgca tactggatac cggtgcatcg      1260
     tgcaacgtga tcggcctccc ttcgttgtta gagattttgg atggaaaatc ggtagaactt      1320
     gataaacagc aaccagtctt gaagggattt ggtggctcat caactagagc gttgggcaga      1380
     gctacattgg atttgcgaca caacgataag cagtataaat ccgttttcac cgttgttgat      1440
     tttcgacaga taccgatatt gtcgatgtac tcgtgtctaa agttaaatct attgaaactg      1500
     tgcttgtcgg tgtcggctga acatgaagtt actgcgaaga atatcgttgc cagatatcca      1560
     ggcgtgttcc aaggaattgg taaattagct ggagatgttc acttggaagt tgatcattca      1620
     gtaaagccgg tggtacaacc agcacgcagg atcccagtta ccttgcgcga ggaactgaaa      1680
     attcagttag atgaaatgga gaagctgcaa ataatttcga aagtgaacga accaacggaa      1740
     tgggtgagta atcttgtcct tgtaaaacga aataacaaaa ttagagtctg catcgatcct      1800
     gttgttttaa atactgctct taaacgtcct cattatccaa ttccaactgt caatgaactt      1860
     ctacctgaac tatcaaaagc taaaattttc actacggttg acgcaaaatc tggattttgg      1920
     caggtgcagc tggatgagga aagttcgcgg cttacgactt tctggactcc ctacggtcgg      1980
     tatcgttggt tgaggatgcc gtttgggatt tcacccgctc cagaaatctt tcaacggaag      2040
     ctacatgaaa caacacacgg attgaaagga gttcgagtcc tagcagatga cggataattt      2100
     tcggatgtgg gagcagttca gaagaggcca tgatagatca caataataac ctcgatgcgt      2160
     ttctcaagag aatgagtgaa aaaaacgtca aactcaacaa ggacaagata cgtcttttcc      2220
     aaccgcaagt gaaatttttt ggacacattc tcacctcggc gggagtaaaa ccagaccctg      2280
     aaaaagttcg ttccatcatc gatatgcaac caccgcagga tgctgcaggg cttctccgat      2340
     ttttgggaat gatcacctac ctctccaatt atctgcctaa attgtcgacg atagctgaac      2400
     ctctaagaag actaactggg agcaagaagc atggagatgg gaagaagaac acgatgccgc      2460
     gttcgttaaa ttgaagacga tggttttacg agctcctgtg ctgaaatatt tcgatgtcga      2520
     taaggaggtc actattcagt gtgacagtag cagtgtagga ttgggagcag tactcctgca      2580
     agaaggtcag cctgtgtgtt acgcttcgaa aacgttgaca ccaacggaaa gaaggtatgc      2640
     acaaattgaa aaggaaacat tagccatact gtatgcctgc cggaaattcg agatgtatat      2700
     tatcgggaag gacgttacgg ttcagactga tcatcaacct ttgttgcgga tcttcaagaa      2760
     gccattgatt gaagcaccga tgagacttca acgaatacta ttaggattgc aaaggtacaa      2820
     ggttaagcta ctatttaagc ctgcaaagga agtcgttatc gccgacatgt tatcaagggc      2880
     agcacttact gaaagtgacc ttactgacag aagtatttat gacgtctaca caatggacat      2940
     ggacttcacg ctggcggact atgaagcgat caactcagcg gagtatatac ctatttccga      3000
     ctttcgtctg gatcaacttc gccgagcatc gtctgaagat ccggatatcc aaacaatcat      3060
     tcgattcatt gtggacgggt ggcctttaac gattggagag ttgccagaga gaatgaggat      3120
     ttactggaag tacaaaaacg aattctacac ccagaacgga ttggtctaca ggaataatcg      3180
     tatattggta ccggttagtc ttcgatcaaa cattttggaa cgtttgcaca cttctcactc      3240
     tggtctcgaa gcaacaatga aactcgctcg tgacactgtt ttttggccag gaatcaatga      3300
     ccaaatacgc caacgcattc agagttgtta ttcttgtctg aaatttgccc caaatcaaca      3360
     aagagaacct atgcaaacac atcaaattcc atgttacccg taccaaaaga tctctctcga      3420
     tttgtgagag ctccaactga aaggcagcaa acacgtgtat ttgataacgg ttgatcattt      3480
     ttctgacttc atcgaagtcg atgagctcca aagaaatgca accgcttcga atgtggtcaa      3540
     taagtgccgc caaaactttg cccggtacgg cactccgatg tatgtaacaa ctgatggtgg      3600
     tccgcagttc aacagcgctg aattcaggaa gttggctacg gagtgggaat tccttcatac      3660
     gatgtctgct cctcaccacc aacaagccaa cggcaaagca gaagcagcgg tgaaaataat      3720
     taaacagttg ctaaagaaaa caggagaaac taattcggat ttttggaaag cattacaaca      3780
     gtggcgtaac gttccgaata actgtggaag ttctccggca caaaggatgt tctgtcgtcg      3840
     tataagattc aacgttccta tggctgaagc aaaatacaca tcacatattc aagcgggagt      3900
     aaaggagcgt attaagaaga atcgtcaaac tgcaaagtac tactatgatc gcacagcgaa      3960
     gagtcttcca ccgttggaaa taggacagcc agtatttgtt aagaaaaaac ctactgacaa      4020
     tacgtggtta cctggagaag taaaggctac tgcaactgat cgatccacaa tcgttgacgt      4080
     tcgtggtcag caattacggc gtgataacgt gatgatcaaa cgtgtaccgc aagcagctta      4140
     tcatcattca ctactatctg gaaacgaggt cacagcaagg tctgataata gccggaaacc      4200
     tgtaccacag ctggatgcaa atcccacgat tgattccagt aatcaaggaa caccatctag      4260
     accatcctca gcaccggaag tgacatcgga gcgacccaaa agacgtattc ttgttcccta      4320
     acgttttaaa gattttgaaa tgtattgata agctcaattc ttcaattgat gaaaagggag      4380
     a                                                                      4381
//
ID   Gypsy-96_AA-LTR repbase;    DNA;    INV; 146 BP.
XX
AC   supercont1.312;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-96_AA_;
KW   Gypsy-96_AA-I; Gypsy-96_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-146
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.312; Positions 1190435 1190290.
XX
SQ   Sequence 146 BP; 54 A; 23 C; 26 G; 43 T; 0 other;
     tgttacatgt ttaacataaa aatgtaatga ctttgttttg aaaaatggtt tggcaacact        60
     gatcaaataa aaagcagttt tgaattcctg acgctgtgaa caagtcgtct atcaatccga       120
     gctccgaagt aaaatagcat gaaaca                                            146
//
ID   Gypsy-96_CQ-I repbase;    DNA;    INV; 1906 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-96_CQ_;
KW   Gypsy-96_CQ-LTR; Gypsy-96_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1906
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 571-571 (2011).
XX
DR   [2] (Consensus)
XX
CC   'AAACAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..1906
FT                 /product="Gypsy-96_CQ-I_1p"
FT                 /translation="MDGASSMDQQPAGQQQQMPGGVAPVEQQPVPDGQVAA
FT                 GQQQQAFIRSPLHPPPELQRLLEQQRGYVDEMFRQQHEVVRLQLARIQQQQ
FT                 LEFMQRQGHILRNIVAAVNEQVSPHPEAQECAKMSLTMGNSRRAEEVRFEQ
FT                 QESNIASSIVEGVNTGSDGDRRKFVPIVNNKSARVNLDTGSATTKASTGTW
FT                 RKVGCHPTSTSVAEAVAAQMLEVDGKFYYEMTVGGWTFVGLARATRKQLFG
FT                 CDTTDGFGPSQVPNVNISQQGGNSSPIGGIFKAVMKVDSGCLSSFVDRKLA
FT                 ADVVPGFRSAERRTTAKYRPLEDVLDQLKQDLFFSPEAIPERFLVVREEGE
FT                 RLQGKYTCRRQYKHQQPGTTAVLEASQQLTEPKLAGPWRISGLLDDLEEPL
FT                 AVHKNEAGRSITTIQMQVLVVCPKAYGSIPNRQGVGCASPSEAILERIRTK
FT                 LEFEPPPSTTSSALASERTKRTRMFARHDSVYSKYTDSKRQWSTGVDYDRS
FT                 NMVMDDRRQIEPHAAQPRSSADWDPGPETVRKAVAAAGETGTFLALGLWLS
FT                 QQPLTNITITPAVRVVKERTCAIGTGAMLFFKVEETCSGSTRTSSIKAGGC
FT                 WSQLKQ"
XX
SQ   Sequence 1906 BP; 456 A; 492 C; 592 G; 366 T; 0 other;
     aaagtggcga ctcggtgatt gttttgaccg agttttctcg gtcgaaattt cgcccacgcg        60
     gaaaagtttt ctccggggaa gatccggacg cgagatggac ggtgcgtcct ccatggacca       120
     gcagccggcg ggtcagcagc agcagatgcc gggcggcgtt gcgccagtgg agcagcagcc       180
     ggtgccggac gggcaagtcg cggcggggca acagcagcag gcgttcatcc gttctccact       240
     ccatcctccg ccagaacttc aacgcttgct ggaacaacag cgaggttatg tggacgagat       300
     gtttcggcag caacacgagg tggtcagact tcagctggca cggattcagc agcagcagct       360
     ggaatttatg cagcgccaag gccacattct gcgaaacatc gtcgcggcgg tgaacgagca       420
     ggtttcgccg cacccggagg ctcaggagtg cgcaaaaatg agcctcacga tgggcaactc       480
     caggagggct gaggaggtta ggttcgagca gcaggaaagc aacatcgcca gttcgatcgt       540
     tgagggtgtc aacacgggca gtgatggaga tcgccgtaag tttgtgccga ttgtaaacaa       600
     caagtcggct cgtgtaaatc ttgacacggg atctgccacc actaaagcat cgaccggaac       660
     gtggcgcaaa gttggctgtc atccgacgtc aacatccgta gcggaagcgg ttgcggccca       720
     gatgctggag gttgacggga agttttacta cgagatgacc gtcggcgggt ggacattcgt       780
     tggtctggcc cgggcgacgc gaaagcagtt gtttggttgc gacacgactg acggtttcgg       840
     accgtcgcag gtgccgaacg taaacatctc gcaacagggt ggcaactcat ctccaatcgg       900
     tggtattttc aaggcggtga tgaaggtgga ctccggctgt ttgagcagtt tcgtcgacag       960
     aaagctggca gcggacgtgg tacctgggtt ccggagtgcg gaacgccgaa caaccgcaaa      1020
     gtatcgaccc ctggaagacg tgctggacca gctcaagcaa gatctgttct tctcacccga      1080
     ggccattccg gagcgatttc tggttgtgcg ggaggaaggt gagcggctcc aaggcaagta      1140
     cacatgtcgt cgccagtaca aacatcaaca accaggcacg acggcagtgt tggaagcgtc      1200
     gcagcagctg actgaaccga agctggctgg accgtggaga atttctggtc tccttgatga      1260
     cctcgaggaa ccgctagcag tgcacaagaa cgaggcgggg aggagcatca ccacaatcca      1320
     aatgcaagtg ctggtagtct gtccgaaggc gtacggtagc ataccgaacc gacagggtgt      1380
     cggctgtgct tcgccttctg aagcgatttt ggagcgcatt cgaacaaaat tggaatttga      1440
     accgccacca tcaacaacgt catcagctct tgcaagcgag cgaacgaagc gaactcgaat      1500
     gtttgcgcga catgattcgg tgtattcgaa gtacactgac agcaagaggc agtggtcaac      1560
     aggtgtggac tacgatcgaa gcaacatggt gatggacgac cgacgacaga ttgaaccaca      1620
     tgctgcccag ccacgcagtt ctgccgattg ggatccagga ccagaaactg tgaggaaagc      1680
     ggtcgcagcg gccggggaga ctggaacgtt tcttgcgctc gggctctggc tgtctcaaca      1740
     acctcttacc aacatcacga tcaccccagc agtccgtgtc gtcaaggaac ggacctgcgc      1800
     catcggtacc ggtgccatgc tgttcttcaa ggttgaagaa acctgcagtg gttcgacccg      1860
     taccagttca attaaagcgg ggggatgttg gagccaactg aaacag                     1906
//
ID   Gypsy-96_CQ-LTR repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-96_CQ_;
KW   Gypsy-96_CQ-I; Gypsy-96_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-254
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 572-572 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 254 BP; 65 A; 62 C; 58 G; 69 T; 0 other;
     tggatggtcg caccttttcc acacgccact ggactcgcgg ttgacagcca agcctgtcaa        60
     gcctcgactg tcgtgacagt gcgttgagca agattgacag ttgtcaccaa gaggaaataa       120
     atcattacag tttagataga gaacaaacaa cacgcgtttt tattacttgg acaagtctcg       180
     tccttataat tgttaattta attatcttgt gcccgcgtac cacctcggcc accgtgggta       240
     cgtttggggc taca                                                         254
//
ID   Gypsy-97_AA-I repbase;    DNA;    INV; 4614 BP.
XX
AC   AAGE02017326;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-97_AA_;
KW   Gypsy-97_AA-LTR; Gypsy-97_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4614
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017326; Positions    9162   13775.
XX
CC   Positions [1918-2490] - Reverse transcriptase
CC   Positions [3616-4077] - Integrase core
CC   'TGACC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           478..2148
FT                 /product="Gypsy-97_AA-I_1p"
FT                 /translation="MENWNINPFKFNHLPDTQIRKEWLRWKRNFEVIIAAS
FT                 EEKNATKLKNILLAKSGLELQDLFYSIDGADVEEDAEKEIDPFKTAIGKLD
FT                 EHFTPKQHDSYERSEFCKMVPAITSDGTREPLTKFLMRCNEQAKKCDFGKT
FT                 EAESRELRVIDKIIYHALVELREKLLHEETLTLAQVSRMVNSFESIKQQVQ
FT                 AIAGNGIGEAPVSQPSDQDKVNRIFGSGKPTSGACYRCGQKTHYGNDQQCP
FT                 ARNKQCEKCRKFGHFARVCRSMPKRKYDDHIPYSARKKAKTDNVRAIKCSE
FT                 NENSPSFICNIGDGDEFLWVDVGGVLIKMLIDSGTNQNIIDDCTWRNMLIQ
FT                 GVRCWKPIHVPNVVLRTYGRNATPLDVAHVLETTFTIGNGNNQRQETAIFY
FT                 VIDGGSQPLLGKDTAKRLGVLKIGFQEPNMSVNAIVPAGKRPFPKMRNVQL
FT                 SIAINKNVTPIAQRVRRPPIALLSRIEEKLNQLLMADIIEPVSGAAPWVSP
FT                 LVTIVKDNGDLRLCVDMRRANQAILREHHMMPTFESFLPRLKSAKYFSRLD
FT                 IKDAFHQVRQ"
FT   CDS           2290..4581
FT                 /product="Gypsy-97_AA-I_2p"
FT                 /translation="MFGLSCAPEMFQKTMEQILAGCENVIDYIDDIFIFGE
FT                 TEEEHNTALAKVLSVLKENNIMLNQDKCIFKAQQLDFLGHVISANGVRPTE
FT                 QKIQALQKFREPRTSDEVRSFLRLVTYVGKFIPDMATITAPLRELICGANP
FT                 FKWTDEHQRSFEKLKQLISNANTLAFFNNSLRTRVVPDASPVALGAVLLQF
FT                 ADNTDNCPRIISYASKSLTTTEKRYCQTEKEALALVWAVEKFSEYLIGREF
FT                 ELETDHKPLEVIFSPSSTPCARIERWVLRLQSFRFTVKYRKGSGNIADSLS
FT                 RLVCSDNANDFEKDSHFMVLAIQESVAVDICEIEEASRDDPEIAAVKECLR
FT                 GGQWKNPLTKPYEPFQNELGFIGDTMIRGNKLVVPKKLREQMLQLAHKGHP
FT                 GESVMKRILRDRAWWPSMDRETKEHCTSCEGCQLVSFPSRPEPMNRRELPT
FT                 KPWIDVAIDFMGPLPSGEYLLVVIDYFSRYKEVEIMNRITASETVERLGKI
FT                 FTRLGYPRTITLDNAKQFIGKEFENYCKIHGITLNHTAPYWPQENGLVERQ
FT                 NRSLLKRLQISHGLGRDWKRDLKDYLIMYYTTPHSTTGKTPTELCYGRTIR
FT                 SKLPAIQDIESIPPASDFRDQDFLSKQKGKEREDIRRHAKHSDIDEGDTVL
FT                 MKNLMPKNKLSTVFNKTKYTVVDRSGPRATVEDTDTGAMYERNVAHLKKIN
FT                 DDTRVATEQRCDETMVDDRSINEEDNFAGFPIEDEEVPNHGFIGDGERQRR
FT                 GRKVPEKYKDFVM"
XX
SQ   Sequence 4614 BP; 1524 A; 898 C; 1044 G; 1148 T; 0 other;
     tctggcgacg agcttgtgaa acgtaccctc tgcatttagt aggtaagaaa aaataaataa        60
     aaataaaata cttacaacaa acatccacgt gtgtcttttg caaggtgagc gcacgtgggg       120
     caggcaaaag ccgttgcaaa acgcaaaaaa aagtgaccat ttccgctgcc gtagagcagg       180
     gacaggcaac aaccgctgta ttgagcagaa accgatcatt tccgctgcca tagagcaggg       240
     tcaggcaccg agccgcttcg agaaaacaag gcgtgtagcc gctgcgtttg ggcagaaaaa       300
     aggcgagaag ccgctaccgg gagtagaaat aggcattagc cgctacaaat ttgcagaaat       360
     tataaaaaaa aaaaaaacga accctagggc ttgttgtaca gtcgctatgg taacgaggtc       420
     aaattgaaaa tttcaaatat ttttagctaa cgttccagcg cctactgttc gcgtaagatg       480
     gaaaattgga acatcaatcc atttaaattc aatcaccttc cagacacgca aattcgaaag       540
     gaatggttgc gttggaagag aaatttcgaa gtaatcattg cagcaagtga agagaaaaat       600
     gcaaccaaat tgaagaatat actactagcg aagagtgggc tggaactaca ggacttgttt       660
     tactcgattg atggcgcgga cgtggaagaa gatgctgaaa aggagattga cccattcaaa       720
     acggctattg gtaaactgga tgaacatttt acaccaaaac aacacgattc gtatgaaagg       780
     agcgaatttt gtaaaatggt tccagcaata acatctgatg gaacacgtga gcctttgacg       840
     aagtttttaa tgaggtgcaa cgaacaagcg aagaaatgtg acttcggtaa aacagaagcg       900
     gaaagtcggg agttgcgcgt aatcgataaa atcatctacc acgctctggt tgaattgagg       960
     gaaaaactac tgcatgagga aacactcaca ctcgcacaag tatcccgaat ggtgaattct      1020
     ttcgaatcaa tcaaacagca agttcaagca attgctggca acggtattgg cgaggcaccg      1080
     gtatctcaac catcagatca ggacaaagtt aaccgcatat ttggaagtgg taaaccaaca      1140
     agtggtgctt gttaccgatg tggacaaaaa acccattacg gaaacgacca gcaatgccca      1200
     gctcggaata agcaatgcga aaaatgtcgt aagtttggtc attttgctcg agtatgccgc      1260
     tcgatgccga aacgtaagta tgatgatcat attccatact ccgctcgtaa gaaggcaaaa      1320
     accgataatg tgcgagcgat aaagtgttca gaaaacgaaa acagcccaag cttcatttgc      1380
     aacattggag acggcgacga atttctatgg gttgacgtcg ggggtgttct gatcaaaatg      1440
     ttgattgatt ctggcaccaa tcagaatatt atcgatgatt gtacctggcg aaacatgctt      1500
     atccaagggg tcagatgttg gaagccaatc catgtgccga acgtggttct acgaacatac      1560
     ggccgaaatg cgacgccttt ggatgtagca catgttcttg agacgacatt tacgattggg      1620
     aatggaaata accagcgaca ggaaacagct attttctatg tcatcgatgg aggttcccag      1680
     ccattactgg gaaaagatac agcaaagcgt cttggggtat taaaaattgg tttccaggag      1740
     ccgaacatgt cagtgaacgc cattgtcccg gctggaaaaa gaccttttcc aaagatgagg      1800
     aacgtacagc tgagtattgc gatcaataaa aatgttactc caatagccca acgagtcaga      1860
     cgtccgccaa ttgcgcttct cagccggatt gaagagaagc tgaatcaatt actgatggcg      1920
     gatatcatcg aacctgtatc gggagcagca ccatgggttt cgccattggt aaccattgtc      1980
     aaggacaacg gagatcttcg tctgtgtgtg gatatgcgac gtgcgaatca ggctatctta      2040
     agagaacatc atatgatgcc gacatttgaa agcttcctcc cacgtttgaa gtccgccaaa      2100
     tacttcagtc gtctggacat caaagatgca tttcatcagg taagacagta gcctgaaaat      2160
     ataatttttt attaaattgt ctattttttc taaacatgca ttatcgaaat atagattgaa      2220
     ttagatgaat caagtcggta tattacgacc tttatttgcc ataaaggtct gtatagatac      2280
     aaaaggctga tgtttggcct ttcttgtgct ccagaaatgt ttcaaaaaac aatggaacaa      2340
     atcttagccg gatgtgaaaa cgttattgat tatatcgacg acattttcat cttcggagaa      2400
     accgaggaag aacataatac tgctttggct aaagttctct ctgtgctgaa agaaaacaat      2460
     atcatgttga atcaggataa atgcatcttc aaggcacaac aacttgattt ccttggacat      2520
     gttatctcag ctaatggagt acgaccaact gaacagaaaa ttcaagcgtt acaaaaattc      2580
     cgtgaacctc gcacttcgga cgaagtaaga agttttctta gattagtaac ttacgttggg      2640
     aaatttattc ctgatatggc aacaattacc gcgccgttac gagaattaat ctgtggtgct      2700
     aacccattca aatggacaga tgaacatcaa agaagttttg aaaaattgaa acaattgatt      2760
     tcgaatgcaa acactcttgc ctttttcaat aattctctcc gcaccagggt tgtacccgat      2820
     gcctccccag tcgcattggg tgcggttctg ctacaatttg cagataatac tgacaattgc      2880
     ccccgtataa tcagttatgc cagcaagagt ttaactacta ctgaaaaacg ttattgccaa      2940
     actgagaaag aggcactagc attggtatgg gcagtcgaaa aattctctga atatttgatt      3000
     ggcagagagt ttgaattgga aactgaccat aaaccacttg aagtgatttt cagcccatca      3060
     tcaacaccct gtgccagaat cgaacgctgg gtcttgcgat tacaatcgtt tagatttaca      3120
     gtaaaatatc gtaaaggaag cggaaacata gcagattctt tgtccagatt agtttgttcg      3180
     gacaacgcaa atgatttcga gaaggatagt catttcatgg ttttggcgat acaagaatct      3240
     gtggcagtag acatttgtga aatcgaggaa gcatcgcgtg atgatccaga aattgctgcc      3300
     gtgaaagagt gccttcgagg agggcaatgg aaaaatcctc tgacaaaacc gtatgaacct      3360
     tttcaaaatg aattaggatt tatcggtgac accatgatcc ggggcaacaa attagtggtt      3420
     ccaaagaaac tacgcgaaca aatgctgcaa cttgcacaca aaggtcatcc aggagaatcc      3480
     gtgatgaagc gaatactgcg agatagggcg tggtggcctt ctatggatcg agaaacgaag      3540
     gagcattgta catcatgcga aggttgtcaa ttggtaagtt ttccaagtcg accagagcca      3600
     atgaatagaa gagagctgcc taccaagccg tggattgatg ttgccattga ttttatgggt      3660
     cctcttcctt ctggtgagta tctactagta gttatagatt actttagtag atacaaggaa      3720
     gttgaaataa tgaatcgcat aactgcctct gaaactgttg agcgacttgg caagattttt      3780
     acacgtctcg gttatcctag aaccattaca cttgacaatg ccaagcagtt tattggcaaa      3840
     gaattcgaga attattgtaa gatccatgga attactctta accatactgc cccgtactgg      3900
     ccgcaggaaa atggtttagt tgaacgacaa aaccggtcgc tattgaaacg attgcaaatc      3960
     agtcacggcc ttggcagaga ttggaaaagg gatctgaaag attatctaat aatgtactac      4020
     acaacaccac actccacaac ggggaaaaca ccaacagaat tgtgttacgg aagaacaatc      4080
     agatccaaat taccagcaat ccaggacata gaatcaattc cacctgcatc cgacttccgt      4140
     gaccaagatt ttttgagcaa acagaaagga aaagaacgtg aagatattcg acgtcatgcg      4200
     aaacattccg atattgacga aggggatacg gtactgatga agaaccttat gcccaaaaat      4260
     aaactttcaa cagttttcaa caaaacaaag tatacagtag tggatcgttc aggtcccaga      4320
     gcaaccgttg aagatacaga taccggagcg atgtatgaaa gaaacgtcgc gcatcttaaa      4380
     aagatcaatg atgatactag agttgcgaca gaacagcgtt gcgatgaaac tatggtcgat      4440
     gatagatcta tcaatgaaga ggacaacttt gctggatttc ctattgagga tgaagaagtg      4500
     ccaaaccatg gtttcattgg tgatggcgaa cgtcaacgca gaggacggaa agttcctgag      4560
     aaatacaaag attttgtaat gtaaatagtt taataattcg tataaaaagg gaga            4614
//
ID   Gypsy-97_AA-LTR repbase;    DNA;    INV; 187 BP.
XX
AC   AAGE02017326;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-97_AA_;
KW   Gypsy-97_AA-I; Gypsy-97_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-187
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; AAGE02017326; Positions    8975    9161.
XX
SQ   Sequence 187 BP; 63 A; 21 C; 39 G; 64 T; 0 other;
     tgtgctatgc tgagtttgaa ttataaatag taggctttga ttctcaatga aacgaaaggg        60
     cagaataaat tgtgactctg gaagtgtaag acgtgtttgg tgaaattgta tgttaatgtg       120
     aataatccga aacataagtt agtacagaat cattactttt cattaattct gtatttggaa       180
     taccaca                                                                 187
//
ID   Gypsy-97_CQ-I repbase;    DNA;    INV; 7137 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-97_CQ_;
KW   Gypsy-97_CQ-LTR; Gypsy-97_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-7137
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 573-573 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [4675-5148] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1438
FT                 /product="Gypsy-97_CQ-I_2p"
FT                 /translation="MDNLKKLDDYFAKEMNFLSNNFPNEQEDIVLKMKEAK
FT                 VTVNSYKDKLIELREISIPKEYDKIVNNFNETVKSFQLTLECFASKLNQEE
FT                 RLIDLKLNVMEDTEFPMDSALKCIPDFYGKSEDLNSFLDQINYFYNKIPKG
FT                 VSLTPLINVIQLKLKGKAKPFTKTILKLTWEEIEKNLLHEFGDKKSSLNIF
FT                 KRIDTLSQYEHETFKAYKNRALEILFDLEIDKNVDSFAMENLRIHFIAGLK
FT                 NTYLQQTARNLTIQNFRDFLSILEEKRISNEEFENLYKDKQRLNSQNIKNE
FT                 FSNQKQDVNDNRNFSTHQNRLNNYQNQYNYSNKRYHQNRFRNNFKQFYTQR
FT                 KN"
FT   CDS           1885..5502
FT                 /product="Gypsy-97_CQ-I_1p"
FT                 /translation="MKNLSVPGIIGAEFLKKHTLFIDKNFKFIVLQKPKIY
FT                 FKSNNVESNQIYKKNSFENNESSVTNYQNDTSGFQKDQEVKYEGEILNNVA
FT                 FCENIVRSDETSDGFENKLDDQSCMPTELNLDIDKDGDVTEFKNLKSIKGR
FT                 ERIQKIIDLVNLEHLNKHNFEEIVSMIEKFNKLFFIEGDELTFTDAAIHEI
FT                 ETTTNIPINKRQYRMPEATKVHIDEQIDEMLKLGIIKPSKSPWNAPVLCIP
FT                 KKVGADGKQKYRIVVDFRSLNMITKPFVFPIPLINEILDNIGDAQYFSSID
FT                 LKSGFYQIPINPKDAAKTAFSTSKGHYEFLRMPMGLRNSPATFQKLMNIIL
FT                 YSIQPIKAFVYLDDIIVFGKTIEEHNENLFKILEALYQNNLKVETSKCTIL
FT                 KTQINYLGHTIDKHGIMPTDDNIKTIKELKRPQNVKDVRSFLGTINFYGKF
FT                 IPNMADKRKHLNNLLKKDVKFKWTEECEKAFHDLKHCLISEPILVRPNYKD
FT                 TFVITTDASDYAVGAVLSNAKTNDNPIAYASRALSVSEKKYHVIEKELLAI
FT                 VWAVEYFKHYIFNQQFIVYTDHRPLIAIWRLKETSPTLSKLRLKIQGIGCD
FT                 IRYKQGKENVVADFLSRIKHEENSNANIENVSESSNNNLIAVVTRQQTRQN
FT                 SNLIDNSKPVRNNQSLLQQNSNYTTDNLSDNDDDLDITIDSLQAIDIMDKK
FT                 DDDSWKKFTLDDFFDAQNKEEINFSLLKFTKTMINVNNTDANFVIINSKTA
FT                 FKELSELVDLPHGMKDNINGRIFSFPDNKLWGFILNGSKRSITNREELFEG
FT                 LLESFVKCPDFAKSAKNIQIISFRNLQQLPDVNILRFMAGKFDKMFTLYAS
FT                 NEDRMFVKVEDRETVLKEFHDAPLGGHVGGKRMLQRISPLFTWENMRRDIE
FT                 NYVRQCELCQKNKIWPKNKIPMKITTTSTEPFQKVFMDIVILTPSDDNNRY
FT                 GLVIQDDLTRFLTVAVLPDQESSTVAKAFVEHFICRYGAPLEVVTDQGTNF
FT                 MSNLLKNVCKILKIKKINTSAYHPQANLVERSNRELKIYLRNFIVGNPQTW
FT                 DQLIPFFTFQYNTTINSSTGFTPFELLYGRLARIPNTVYNITDRELNYDDY
FT                 IKEMKANFKNVHDKAVENVIASKHKRKEIYDKDAKEWQPWWGDLVIVETIP
FT                 TGVGKKLQSLWRGPYEVVDLPSEQTTVIKNGNKLEKIHNNRLRKFND"
XX
SQ   Sequence 7137 BP; 2803 A; 993 C; 1211 G; 2130 T; 0 other;
     aagtggtgac agcagaaaag tttaaagaaa attaaacagg aacgcttttg ctgactagtg        60
     aaaaaaccag tgtcgaaccg ctagccaatg ccaaaggaaa catttagtga agagtgaaga       120
     tggcagttca aacgccagcc attatgattg aaaaaatgtg acaatccgcc agccaaaccc       180
     atggaaagca acttcagttt tgtgacgatt gaagctttaa aatcacgatt atcgaaatat       240
     ttttcatcga accgccagcc atggagaaca ttcagaaaac cagcaaagaa aaatgggtaa       300
     gttgtaatat tttactattt ttgtaattaa attgaagtgg ataattttgt tcatgggcaa       360
     ttaaatgtta ttttgaaaag ggaaattgtt aaattctttc aacatggata atttaaagaa       420
     actagatgat tattttgcta aggaaatgaa ttttctttcc aataattttc ctaatgaaca       480
     ggaagacatt gttttaaaaa tgaaagaagc aaaagtgaca gtcaattctt acaaagataa       540
     attgattgag ttacgagaga tttcaattcc caaagaatat gacaagattg tgaacaattt       600
     taatgaaact gtcaaatcat ttcagttaac tcttgaatgt tttgcaagta aactaaatca       660
     agaagagcgt ttgatagatt taaaattgaa tgtgatggag gataccgagt ttccaatgga       720
     ttctgcgctt aagtgtattc cagattttta tggtaaatca gaagatttaa attctttcct       780
     tgatcaaatt aattattttt acaataaaat tccaaaaggc gtttctctta caccattgat       840
     taatgtaata caactgaaat taaaaggtaa agctaaacca tttactaaaa ctattttaaa       900
     acttacttgg gaagaaattg aaaagaattt gttacatgaa tttggtgata aaaagtcttc       960
     tttaaatatt ttcaaacgga tcgatactct ttcgcagtac gaacatgaaa cttttaaagc      1020
     atacaagaac agggcactag aaattttatt cgatttagaa atcgataaaa atgttgatag      1080
     ctttgcaatg gaaaatctaa gaattcattt tattgcggga ctgaagaata cttatttgca      1140
     acaaactgca agaaatttaa caatacaaaa ctttagagat tttttgagta ttctagaaga      1200
     aaaaagaatt agtaatgagg aatttgaaaa tttgtacaag gacaaacaaa gattaaattc      1260
     acaaaacatt aaaaatgaat tttcaaatca aaagcaagac gtgaatgata atcgtaactt      1320
     ttcaacccat caaaatcgat tgaataacta tcaaaatcaa tataactact caaacaaaag      1380
     atatcatcaa aaccgattca ggaataattt taaacaattt tatacacagc gaaaaaactg      1440
     aatgatgggg ttttcgatca ttttggcgtc cgaaacaccc gacaaaatgc gaatcaatat      1500
     aacagacgct acaattatcg tgctcctagg tattatagaa atcgtaacaa tatttttcgt      1560
     aataatttta gtttgacttc tcagagagaa ttctacaatc ctcctcatga agtactaaga      1620
     ataattttaa ctccttatct tcaatttaga ttaagaattt catctaaaca aaatccattt      1680
     cattctattt actatttact tgatacaggt gctagtgtca atgtaataag tagtaatatt      1740
     ttgaatcaaa taggttacac tcatgttaat tttaaggaca aaattacttt aactggcatt      1800
     ggtaatacat taactgaaac gataggatcg gtggttattg atttattaat cggtaaaaca      1860
     atttataaca caaaattcta tgttatgaag aatttgtctg tgcctggtat aattggagca      1920
     gaatttttaa agaagcacac tctcttcatc gataaaaact ttaagttcat tgtattacaa      1980
     aagccaaaaa tatattttaa atcgaataat gttgaatcaa atcaaatcta taagaaaaat      2040
     agttttgaaa ataatgaatc aagcgttact aactatcaaa atgataccag tggttttcaa      2100
     aaagaccaag aagtcaagta tgaaggagaa atactaaata atgttgcgtt ttgcgaaaat      2160
     attgtacgct ctgatgaaac aagtgatgga tttgaaaata aattagatga tcaatcttgt      2220
     atgccaacag aattaaattt agacattgat aaagatggtg atgtaacgga attcaaaaat      2280
     ttaaaaagca ttaaaggtag ggaaagaatt cagaaaataa ttgatttagt aaatctagaa      2340
     catttgaata aacataattt tgaggaaatt gtttctatga ttgaaaaatt taacaaatta      2400
     ttttttattg aaggagatga attgactttt acggatgcag caattcatga aatagaaacc      2460
     acaacaaata ttcccattaa taagaggcaa tataggatgc ctgaggcaac aaaagtgcac      2520
     attgatgagc aaattgatga aatgctcaaa ctgggtatta ttaaacctag taaaagcccg      2580
     tggaatgctc ctgttttatg tataccaaaa aaggttggag ctgacggcaa acagaaatat      2640
     agaattgttg tagatttcag atcactaaac atgataacaa aaccttttgt tttcccgatt      2700
     ccattgatta atgaaatttt ggataacatt ggcgatgcac aatacttttc gtcaattgat      2760
     ttaaagtcag gtttttatca gatacctata aaccccaaag atgcagctaa aactgcattt      2820
     tcaacttcaa aaggacatta tgaattttta agaatgccta tgggtcttag aaatagccca      2880
     gcaacatttc aaaaattaat gaatattatt ttgtactcga ttcaaccaat taaagcattt      2940
     gtttatctcg atgatattat tgtatttgga aaaactattg aagaacataa tgaaaactta      3000
     ttcaagattt tagaagcatt ataccaaaat aatttgaagg tagaaacatc aaaatgtacc      3060
     attctgaaga cacagattaa ttacctgggt catacgattg ataagcatgg aattatgcct      3120
     acagatgata acatcaaaac aatcaaagaa ttaaaacgtc ctcaaaatgt taaggatgtt      3180
     cgttcatttc tgggaacaat caatttttac ggcaagttta ttccgaatat ggcagataaa      3240
     cgcaaacatt tgaataattt attgaaaaag gatgtaaaat ttaaatggac tgaagagtgt      3300
     gaaaaagcgt tccatgattt gaaacactgc ttaatttcag aaccaatttt agtacgtccg      3360
     aattataagg atacctttgt cattacaaca gatgctagtg attatgctgt tggagccgtg      3420
     ttatcaaatg ctaaaacaaa tgataaccca atcgcttatg ctagtagagc attaagtgtt      3480
     tctgaaaaga agtatcacgt tattgaaaaa gaattactcg ctatagtttg ggcagttgaa      3540
     tattttaaac attatatttt taaccaacag tttattgttt atactgatca taggccgttg      3600
     attgcaattt ggagactaaa agagacctca ccgactcttt ccaaattaag attaaaaatt      3660
     caaggtattg gatgtgatat ccgatataaa cagggaaaag agaatgttgt tgctgatttt      3720
     ctttctcgta tcaagcacga agaaaattca aatgcaaaca ttgaaaatgt ttcggaaagt      3780
     tcaaataata atttaattgc tgttgttact agacaacaaa cacgtcaaaa ttcaaattta      3840
     attgataact caaaacctgt tcgaaataat caatctttat tacaacagaa ttcaaattat      3900
     actactgata atctttcaga caatgatgat gatttagaca taactattga ttccttacag      3960
     gctatcgata ttatggacaa aaaggatgat gattcatgga aaaagtttac attggatgac      4020
     tttttcgatg ctcaaaacaa agaagaaatt aattttagtt tacttaaatt tacaaaaaca      4080
     atgatcaatg tgaataatac agatgctaat tttgtcatca ttaatagtaa gacagcgttc      4140
     aaagagctaa gtgaattggt ggatctacca catggtatga aggacaatat aaatggaaga      4200
     attttttcat ttccagataa caaattgtgg ggttttattt tgaatggatc aaaacgttca      4260
     attactaata gagaagagtt atttgagggt ttgttagaaa gttttgttaa atgtcctgat      4320
     tttgccaaat cagctaaaaa tattcaaatt atttcattta gaaatttaca gcaacttccc      4380
     gatgtcaata ttctaagatt tatggcagga aaatttgata aaatgtttac actatatgca      4440
     tctaatgaag acagaatgtt tgtaaaagta gaagacagag aaacggtttt gaaagaattt      4500
     catgatgctc cccttggagg tcatgtggga ggtaaaagaa tgcttcaacg tataagtcca      4560
     cttttcacat gggaaaacat gcgtagagat attgaaaact atgtaagaca atgtgaactg      4620
     tgccaaaaga acaagatttg gcccaagaat aagattccta tgaagataac aacgacttca      4680
     acggaaccct tccaaaaagt attcatggat attgtaatat taaccccatc tgacgacaat      4740
     aatcgttatg gtttagtgat tcaagatgat ctaacaagat ttttaacagt tgctgtattg      4800
     cctgatcagg aaagctcaac tgtcgctaaa gcattcgtgg aacattttat ttgtcgctat      4860
     ggtgctccac tagaggtagt taccgatcaa ggaacaaatt ttatgagtaa tttactgaaa      4920
     aatgtatgca aaattttgaa aataaagaaa ataaatacaa gtgcatatca tccacaagca      4980
     aatttagtag aacgatcaaa tagagaactg aaaatctatt tgcgaaactt tattgttgga      5040
     aatccgcaaa catgggatca attaattcca tttttcactt tccagtataa tacaacaatt      5100
     aattcgtcta ctggatttac accatttgaa ttattgtacg gaagattagc gagaattcca      5160
     aatacagttt ataacattac tgacagagag ttaaattacg atgattacat aaaggaaatg      5220
     aaagcaaatt ttaaaaatgt ccacgacaaa gctgtagaaa acgtaattgc ttcaaaacat      5280
     aaaagaaagg aaatttacga caaagatgca aaagaatggc aaccttggtg gggggatttg      5340
     gttattgtag aaaccattcc cacaggtgta ggaaagaagt tacaaagttt atggcgaggt      5400
     ccatatgaag ttgttgattt accaagtgaa caaactacag taattaagaa tggaaacaag      5460
     ttggaaaaga ttcacaacaa tagattgcga aaattcaatg attaacgagg attttattta      5520
     tgaacaagca ttttattata aacaaatgac taagatattg ggaaggtaaa aagatgaata      5580
     tagattataa attacaacgt gcagaaaaag aaagattatc aaggtcatga actgaaatta      5640
     aatccacgtg gtacataatt ataacatatg tttaaagacg tcaataatta tatttaatgg      5700
     gattatttag taaaagagtg cactctactg atcagtacaa taaatgatat cacagtataa      5760
     ttgagatgga taaatgatgt tttgatgcgt gattggacaa gggactgcag cccagaatac      5820
     atgtgtttgt gtgtgaaaaa taaaatgcag tgtgggtcga gaaaacacaa atagattatc      5880
     ccacatcaca tgataaagta tgtatttagt ttcattttag gaaaaaattt aggtccttat      5940
     tcaaacaagc ctaattaaac ctggaaaaag agaggggaag aggattttgc aaacaaaatc      6000
     tttacaacgc accttaaaca caaatattat cgatgaactg aagtaaaaaa cgtgagagta      6060
     agcggagtaa gtataaaaaa ctaatatttt gaaaaacttt ttagccaatg ccagtgtaga      6120
     tcaatgagca gtagatgcag gataggctta ggaaattata attataatat actttgctac      6180
     aatgattaat atcaacttta aacaaagaat tgttaaattg atagtcactt aggaaattat      6240
     tctctgtaac acgacactac acaaatatgt aaaatctcac ctacacgaac acaaatatca      6300
     tcaaacgtta acattcggat acagcggata gcagcaatac aactacaaca tttcggacaa      6360
     cacatttggc atcaacgaat tattggaagt attgcattca taaattgcag aaaattgaga      6420
     caggagatga gttgtataaa aaatggtgga acataacaat gatggagtga agtatatgat      6480
     acaaggcaaa gaatggttat gatgctaaat tatattacat ggaatagttt ctgtttgttc      6540
     agtcagaagc aaaaacttct caaccggaaa aatatatatc aaaactgaca attaaggcaa      6600
     gacatccaaa tacaattctc ggatctaatg gaaaggaaca agtatggcaa aatgatgaaa      6660
     catgatctgt acactacaat cagatcttat ggaatggaat gaaaagtttc gattgaggtc      6720
     cacgaaaatt ttatcgactg cagaacacaa agaaggactg acgcagatct ctatgcaata      6780
     agaaaaaagc atcaaggaaa ggacaagaag gaaaatgtat caaataatgt ttggcagaat      6840
     tgatccacta tagtcaaatc aacaaagtca aatgtctcaa tctatgtggt ttattgaatg      6900
     ttttcaagtt tcaaacaaaa agtcaagtga agaacaacat cgacgaatta tcaagccagc      6960
     tattttatca attatatcaa cgcagaggag acaacagaac gtgaacaaca attatattta      7020
     gtactcagat atacaaaaac atatttttca aaatcaacgt ttatcaagaa ccagcgttag      7080
     gcttacagta gatgattatc ttagcagaca aacatctagc tgggtagtgt aagggta         7137
//
ID   Gypsy-97_CQ-LTR repbase;    DNA;    INV; 675 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-97_CQ_;
KW   Gypsy-97_CQ-I; Gypsy-97_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-675
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 574-574 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 675 BP; 245 A; 101 C; 160 G; 169 T; 0 other;
     tgtagcgacc ctcagttaat cagaatataa atttagattt ttagttcgac caacagggaa        60
     gaatttgtca gaagtacatt ggtctttaca atcagacgaa gtgcaacatc ttcagatgca       120
     ctcattaaca catgttgaca cgagtcaagt gttatatttc taggagcacg taggttaaga       180
     tataaataaa cacagtagga ggatggaagg aaaagcacaa agcgaaaaca gaagggtcat       240
     gaactctgcc aggatccctg ctgagaattt tcgagcagaa agatttcaag atcaacgcgg       300
     tgtagtcaaa acgcacgtgg ctgagctact cccgtagaga tgaatattgc gcatgcgtct       360
     tgactaaaaa cgcttcagag tataaaagcc taagttagat ttagaatcag gggagttgaa       420
     attaggaaag agttaagagt gggagttgag agttgcagtt gggagttgga gttgattatt       480
     cggtgtaagt gctacgatgc acagattcaa ccaaaatgcc acggggcata gtgaaaaatg       540
     ttaaaataag attaagaaaa atctaagaat acatattttg gagttaaagt gaaaatggtg       600
     tcgttctgtg ctaaaggaat aaaaatgaaa gaaatcccaa tgatattaga gactaggctt       660
     acacaagctt acaca                                                        675
//
ID   Gypsy-98_AA-I repbase;    DNA;    INV; 6983 BP.
XX
AC   supercont1.272;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-98_AA_;
KW   Gypsy-98_AA-LTR; Gypsy-98_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6983
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.272; Positions   39110   32128.
XX
CC   Positions [3840-4265] - Reverse transcriptase
CC   Positions [5323-5799] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           499..3024
FT                 /product="Gypsy-98_AA-I_1p"
FT                 /translation="MTLDREYLVGLCVTYLTEEELIFELEIRNLLKDRDRS
FT                 LSVNRRKLKNALREELDGKVRIFTYTKDSAVEMKVCKERFVRVMQNLGDDS
FT                 LDKLMSKTGLLHLYHRLKLFRKTYGVGSLANEANWLFSNVIQTYIDYFDEN
FT                 ALIVPATMPSQAPSVPVDLQGAASLEAQAEASAHDLIILGQSVASLTISTG
FT                 AIPKNTVSHSTPSFPNTTSMSTVELDPIVSNQIAPASVSVDRTPVSISAPV
FT                 VTCSFSGGVQLTWATPSYQVASRVQRARQVRFDTGRDFPIKAYGHLSEVIS
FT                 SAGEQCSVQSSISIVSGSVQSSVSTWQGENNVIPGQARATSGPPVSETMRR
FT                 LPVYSEAYEIPVSSQWSDPYDFPRSTPSISRYNPYQVPQFVQDCPFTMSTT
FT                 QTFAPPQGQSFNPFSGSNFPTQTQSMYRPTDVRPPRSEPPLADLLGLDLRR
FT                 TPVQTSNPNPTNNRTSDFRSSIPNNASFQSGRPYTPAPTPPLNPYQDFDFN
FT                 PVANRAKTIPVVKWPMKYAGDDRGTGLNSFLWEVNDWTKSEQISEPELLRS
FT                 FGNLLTGKAKMWFTSNKHRFTTYSELIDSLKATFRHPDLDHYLLMEIHQRR
FT                 QQKNELFLEFFLDVEKKFKSLSTPVSEVEVVQAVRRNMRAEYKRALIGREF
FT                 HDLFSLQMAGQDVDATNTYLFSKPQVQTNAIEATGELPYNQNRKGGQSSQP
FT                 FQKGSNQGKNQPWNQTNKSNPGSSANNPPGKPPVRKDQRFQQDGKSQSNPR
FT                 SEKNGSSDSESPDSPPSKDVSKGVETQIRTHIPLNDKFICFNCRSQQHLTD
FT                 QCSQPYKVHCQVCGFQGFPTHRCPFCSKNGQRRKDNGPSK"
FT   CDS           3444..4766
FT                 /product="Gypsy-98_AA-I_3p"
FT                 /translation="MDFFSAFNLHISQGTDILFLVDYEENSDSNPPDFVEL
FT                 SSEQEAALEIVKQKFKPAMSDQLEVTSLVQHFIQLTDEYKDSPPIRVSPFP
FT                 YSPAIHKALNEEIDRLLRLGIIEESSSEWALNAVPIKKPNGTVRLCLDARK
FT                 LNARTKRDSYPLAHVSRILGRLGKTRYLSTIDLKDAFLQIALSEESKPLTA
FT                 FCIQGRGMFQYTRLPFGLTNSPATLSRLMDKILGAGELEPWVFVYLDDIIV
FT                 ASDNFEDHIRLLEEVTRRLSDANLSINLEKSKFCRSEVPFLGYLLSCDGLR
FT                 PDPSKVQGILDFEAPRTIRQVRRFLGMVNYYRRFIPDFSTLSAPISDLLAG
FT                 KPKNVRWSKEAEEAFRTIKERLITAPILSNPDFEKEFIVQTDASDRAVAGV
FT                 LTQIQDGSEKVISFVSQKLNAAQQNYYRKRGTRCTHFGRKIQGLHRR"
FT   CDS           4684..5814
FT                 /product="Gypsy-98_AA-I_2p"
FT                 /translation="MRLSKITTEKEALAVLISVEKFRGYIEGSHFTLITDA
FT                 SALQYIRNNKWRPSSRLSRWSLELQHLDMTIVHRRGVDNIVPDALSRSICA
FT                 IRASKPGISSYEDLIVKVEEEPDKYSDFRYEDGQLWKYVPVDEEPYDVRFE
FT                 WKMIPPPGNRQRIIEQEHEGCFHLGVEKTLNRLQLRYYWPHMSSEIRKCIQ
FT                 KCAICKESKPATVPTVPVMGKQKLADHPWQIIALDYIGPLPKSKSGNIHLL
FT                 VIQDLFSKWCQLHPVRRIEAGNLCKILREGWFLRNSIPEIVLTDNASTFLS
FT                 KDFKALLEQHGIKHWTTFRHHSQGNPVERLNRSINAAVRTYCRKDQRGWDS
FT                 KIADIEHVFNNTMHSATGFTPFFVTRKHEIARRI"
XX
SQ   Sequence 6983 BP; 1973 A; 1588 C; 1579 G; 1843 T; 0 other;
     tgaacctcta atttgttata tttggcgccc taacgaaaaa gtaactgttg gatccattcg        60
     agagctaatt tttcgttgga gaagggggga gatttcacgc atgttggatc gaaaaactgc       120
     attaaaaaat tacctctctc aaaattataa ttgcactgtt tcgttctata tagcatcgtt       180
     cgatcatttc tattccatgc gaacgatagg gtgatcgctc agataggtta gatacagcac       240
     gtgctaggta ggattttgtg tggtaagata gcacggtgcc gattgaacaa acaacacaca       300
     cgatcggttt cgctttgtta aaaaattggc aaagcctaaa aatcagaaat tttcgcttct       360
     atctgcatgc ctatattttt tgtgttacta ttgtttttgg ttgaacatat gcggtatagc       420
     gctgctgagc cgtaaatcga tccgtatttg agtattgtct attcgttttt ttgcaccctg       480
     tttcagtttt atttcgcaat gacactggac agagaatacc tcgttgggtt gtgcgtcaca       540
     tacctaaccg aggaagaatt gatttttgag ctcgagattc gaaacctgtt gaaagatagg       600
     gatcgaagcc tgagcgtcaa ccgcagaaaa ttgaaaaatg ctctgcgaga ggaattggat       660
     ggcaaagtgc gtatttttac gtacaccaaa gattctgctg tggagatgaa agtatgtaag       720
     gagaggtttg ttagggtgat gcaaaattta ggagatgact cgttagacaa attgatgtca       780
     aagacgggac tgttacatct ctaccatcgc ttgaagcttt ttcgaaaaac ttatggcgtt       840
     ggcagtctag caaatgaagc caattggtta ttttcgaatg ttattcaaac ctacattgac       900
     tatttcgatg aaaatgcgtt aattgtacca gctacaatgc cgtcgcaggc accatcagta       960
     cctgttgatt tgcaaggggc tgcgagcctc gaggcccaag ctgaagcttc agctcatgat      1020
     ttgataattt tgggtcaatc ggtggcttca ttgacgatct caacgggagc aattccgaag      1080
     aatactgttt cacattctac tccgtccttt cctaacacaa cctcaatgtc tacagtggaa      1140
     ctagatccga ttgtttcgaa tcaaattgca ccagcgtctg tatcagtaga tagaacccca      1200
     gtgtcaatta gcgcaccggt cgtcacgtgt tcattttcgg gtggagttca gctcacttgg      1260
     gcaacaccaa gctatcaagt ggcatcgcga gtgcaaagag caagacaggt tcgttttgat      1320
     acagggcgcg attttccgat aaaggcatat ggtcatttga gtgaagtgat ttctagcgcg      1380
     ggtgaacagt gtagtgtgca aagttcaata agtattgtga gtggctcagt gcaatcaagc      1440
     gtcagtacct ggcaggggga gaataatgta atacctggtc aggcgagggc tacatcggga      1500
     cctccggtat ctgaaaccat gcgacgacta ccagtgtact ccgaagcgta tgaaattccc      1560
     gtgtcatctc aatggtcaga tccttatgac tttcctcgtt cgacaccttc catttctcga      1620
     tacaatcctt atcaagttcc acaatttgta caggattgtc cttttaccat gagcacaact      1680
     cagacttttg ctccaccaca gggtcaatca ttcaatcctt tttcaggatc gaatttccca      1740
     acacaaaccc aatctatgta tcgtccaaca gatgtccgtc ctccaagatc tgaaccacct      1800
     ttagccgatc tgcttggttt agatttgcgt aggacacctg ttcaaacttc gaacccgaac      1860
     cctaccaaca accgaactag cgacttccgc agttcaatcc caaataacgc ttcttttcag      1920
     agcggtagac catatactcc cgctccaaca cctcctctga atccttatca agacttcgac      1980
     ttcaacccgg tagccaatcg tgccaaaact ataccggtag taaaatggcc gatgaagtac      2040
     gctggtgatg accgaggtac cggactaaat agcttccttt gggaggtaaa tgattggacc      2100
     aaatcagagc agatttcaga gccagagtta ctgagatcct tcggtaacct tttaactggc      2160
     aaggcgaaga tgtggttcac gagcaacaaa catcgattca caacatattc ggagttgatc      2220
     gatagtttga aagcaacatt ccggcatcca gatctggatc attacctgct gatggaaatt      2280
     caccaaaggc gacagcagaa aaacgaattg tttttggagt ttttcttaga tgtggagaaa      2340
     aagtttaaga gcttatcgac tccagtttcg gaagttgaag ttgtacaagc ggtgcgccga      2400
     aacatgcgcg ctgaatacaa acgagctcta atcgggagag aattccatga tttgttttct      2460
     ttacaaatgg ccggacagga cgtcgatgcg acaaatacgt accttttctc gaaacctcag      2520
     gtacaaacca atgctattga agcaaccgga gagcttccat ataatcaaaa ccgtaaggga      2580
     ggacagtctt ctcaaccatt ccaaaaaggt tccaaccaag gaaaaaacca accttggaac      2640
     caaactaata aatccaatcc aggatccagc gcgaacaatc caccaggtaa acctccggtc      2700
     cggaaagacc agcgtttcca acaggatgga aaatcgcagt ccaatccaag atcggagaag      2760
     aacggatcca gcgattcgga gtcaccggac agcccaccct ctaaagacgt cagtaaggga      2820
     gtggaaaccc agattcgcac ccacattcca ttgaacgaca agttcatctg tttcaattgc      2880
     cggagtcagc aacacctgac cgaccagtgc tcacaaccgt acaaagttca ttgtcaagtg      2940
     tgcgggtttc aagggtttcc tacccaccgc tgcccatttt gttcaaaaaa cggacaacgt      3000
     cggaaggaca acggtccttc caaatagtca attccacgaa ttcagatcaa ttggcaaacc      3060
     tctccattga tgagtcgctt ggcgaactcg gatatgaaga gttagcaatt gatcggggcg      3120
     taccggcgtc ggacgtccca ccgtcgacgg ttctttcagt ccttcacgac aatagaccgt      3180
     atattaaacc caaaattttt ggaatttctg ttcgcactct tctggattgc ggtagtcaga      3240
     aaactttggt ttctgctaaa gttgcttctc tttggacagg tcctaaaacc aagattttcc      3300
     caagcaatct tacactaacc agtgcctctg gtgatgcact gaatgtggta ggatgcattt      3360
     accttccttt cgatttcagg gatcaaatta aagttttaga gactaccatt gttgaagacc      3420
     ttcccgttga ttgcattgcc gggatggatt tcttctctgc tttcaacctc cacatctcac      3480
     aaggcacaga tattctgttc ctcgtagatt atgaggaaaa ctcagacagt aacccacctg      3540
     acttcgttga gctcagctcc gagcaggaag cggcactgga aattgttaag cagaaattca      3600
     agccggctat gtcagaccag ctcgaggtta cctcactagt ccaacatttt atacaactga      3660
     cggatgaata taaagattct ccacctatac gggtatctcc attcccgtat tcacccgcta      3720
     tacacaaggc tttgaacgag gagatagacc gtctacttcg cctcggaatt attgaagagt      3780
     cgtcttcgga atgggctctc aatgcagttc cgattaaaaa acctaatggt actgtacgtt      3840
     tatgtctgga cgcgcgaaag cttaatgctc ggaccaaacg agacagttat ccgttagcgc      3900
     acgtcagtcg tattttagga cgattgggca aaactcgata tctgagtaca atcgacttga      3960
     aggatgcatt tcttcaaatt gctttgagcg aagaatcgaa gccgttaaca gcgttctgta      4020
     tacaaggtcg cggaatgttt caatacacgc gcctcccgtt cggcctcacc aatagccctg      4080
     caactttgtc cagactgatg gataagatcc tcggagctgg agagctggag ccgtgggtgt      4140
     ttgtctatct agacgacatc attgtggcca gcgacaactt cgaggaccat atccgtcttt      4200
     tagaagaagt aacacgaagg ttaagcgatg ctaatctatc gattaacctc gaaaagtcca      4260
     agttttgccg atccgaagtt ccgtttctgg gatatctttt gtcctgtgat ggtctccgtc      4320
     ctgacccgtc aaaagttcag ggcatcctgg attttgaagc tccccgaacc atccgtcaag      4380
     tccgacgctt tctcggaatg gttaattatt accggcgttt tatacccgac ttcagcaccc      4440
     tctcggcgcc gatctcggat ctgttggccg gaaagcccaa gaacgtgcgt tggtctaaag      4500
     aagcggagga agccttccga acgatcaaag agcggttgat caccgctccc attctatcaa      4560
     atcccgattt tgagaaggag ttcatagtgc aaacggatgc gagtgatcgc gccgtagcgg      4620
     gtgtactcac tcaaattcag gacgggtcgg agaaagtcat cagctttgtt tcccagaaac      4680
     ttaatgcggc tcagcaaaat tactaccgaa aaagaggcac tcgctgtact catttcggta      4740
     gaaaaattca ggggctacat cgaaggtagt cactttaccc taataacaga tgcttcggcg      4800
     ctccaataca tccgcaacaa caagtggcgt ccgtcgtcac gacttagtcg ctggagcttg      4860
     gagttgcagc atctggatat gaccattgtc caccgccgag gtgtcgacaa tatagtgccg      4920
     gacgcattgt cccgcagcat ttgcgctatt cgagcttcca agccaggaat atcatcgtac      4980
     gaggacctga tcgttaaggt ggaggaagag ccggataaat actcagattt ccgttacgag      5040
     gacggacagt tgtggaagta tgtaccggtc gatgaggaac cttacgatgt acggtttgag      5100
     tggaagatga tcccgccgcc tggaaaccga cagcgtataa ttgagcaaga acatgaggga      5160
     tgctttcacc taggagtaga gaagacgctg aaccgtctac aacttcgtta ctattggcca      5220
     catatgtcgt ccgagatccg gaaatgcatt caaaaatgcg ccatttgtaa ggaaagcaaa      5280
     ccagcgactg tcccaacggt gccagtaatg ggcaagcaga agctagcgga ccatccctgg      5340
     cagataattg ccttggatta cataggcccg ctgcccaaga gcaaatcagg aaacatccat      5400
     ctactggtga tccaggatct attcagcaag tggtgtcagc ttcacccagt gcgaaggatc      5460
     gaagccggaa acctctgtaa gattctccgg gaaggatggt ttctgagaaa ctccataccc      5520
     gaaatcgtgt tgactgataa tgcgtcaaca ttcctttcga aggactttaa ggcattattg      5580
     gaacaacacg gaataaagca ttggaccaca tttcgccacc atagccaagg aaatccggta      5640
     gaaagactca accggtccat caacgccgca gtgcgaacat actgccggaa agaccagaga      5700
     ggctgggact caaaaatcgc tgacatagaa catgttttta ataacacaat gcactcagca      5760
     actggattca ctccgttctt cgtaacgagg aagcacgaga tcgcacggag aatctgaaag      5820
     aatctgaaga aagcgtacgc aaccggcgct cagcgctaca acttgcgcaa acgcgtgagg      5880
     ccggacgact ttcaagtggg tcagcaagtg taccgacgca atttcaaaca atcaaatgct      5940
     ggggaatatt acaatgccaa actggctccc atgtatttac cgtgcaaagt gattgtgaaa      6000
     cacggatcta gttcttacga attggaggat cttgaaggga agaatctggg tacatggcca      6060
     gcagagcata tcaaaccgta aattatccct tccgttacgc ttgcaaccaa tagctatttc      6120
     ctttctaaac tgtttcctgt aattttcaaa ttttgatgct ttagccagag agtaagtgag      6180
     ctcactctcc gagtcactca gcaactgctg ctgctctctc aagtgtactg agaggttttg      6240
     catgctgtga gtggttcaag ccttctatgt gacgtctatt gtacctctca gtgggagtag      6300
     ggtgaattag agacaagcat aggagatctt tttcccgtct taccagacgg atattaaaat      6360
     tttaccggcc ggccgataca aaaataaatt ttattccaat tctaacacta actgatcgtg      6420
     aggaaaacct aatgtgtctt ttgaatgaaa agatggccaa aatagggaat ttctgaacga      6480
     tcaaaaccga ggggagtatg gcttatgaat ggtttaaggt ttctattgtg aacgggacag      6540
     taataaaaga aaagagcagt tcgatccact tgcggaaagt tttccaccat tgccagtaac      6600
     tggaggttgc tgtaacttat ctatttaggt gggacgaaga taaatagtca accagcacca      6660
     ctcttgccta aggcagagag atacgaatgt tcgaggagtt cgataaaccc aacattggac      6720
     tcaccgtgat ggcgttgcta gatcacgggg gtcccccaca ttgcgcgtac ccgaatcgag      6780
     cattctctaa atccagacat tagaccgaat ttgatcaact taaatttgat tccgtttgta      6840
     gtttgcacat aagtttattt catatttctt tattttgtta tctggttgtt cattttggtg      6900
     ctttaatata ttattttgtt gtttgatttt tgtgttggtc cagaaaaaaa aaaatctttt      6960
     tttttattgt gccttggggg aaa                                              6983
//
ID   Gypsy-98_AA-LTR repbase;    DNA;    INV; 700 BP.
XX
AC   supercont1.272;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-98_AA_;
KW   Gypsy-98_AA-I; Gypsy-98_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-700
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.272; Positions   32127   31428.
XX
SQ   Sequence 700 BP; 187 A; 158 C; 186 G; 169 T; 0 other;
     tgtaacattt gtcaatgtcc cattaatata aattaaaata atttaataaa attgtaatag        60
     tattgcgtgt ttaggagtta ggtttttgta ttatataaac ttattaaaaa taaaaccgcc       120
     cattgacacg ccgtccgcta ccaacgtcgc tggttaccag ctgccacaac cacgatatgg       180
     ttggtatacg tggttagcag gaaatgcgag agagtgggag agaaaaggcc catagcaggg       240
     ggtttgttag agctcgagct cgattgctgg gccaattaag attctaccag caaggtgtgc       300
     ggatcgtaga aaatcggtcg aagtgtgata attcatgtcc ttcccaaagt ttcgagtgtg       360
     tggtcgataa ccgggagcag actgtgtccc ccgagggcaa taatccttca gaggagtcgt       420
     taaaactacc tccgaaaccg agatacgaag tggtatgtta aacagcccaa actccgcccc       480
     tttaactgtg acgcgagtga cccacgtttc gcgccaagaa tttccgcgag tgccctaaat       540
     gtgtggtggt cgctgagacc gcgtcccggt gcccgtattc gacgcccaat catccaccgg       600
     cggcggtgac atcgctgcga gcggagcggc ggcgcgggcg caacttaaag tttctcacga       660
     gtggcagagt aggcagcccc tgaggttaag gtaagttgca                             700
//
ID   Gypsy-98_CQ-I repbase;    DNA;    INV; 9027 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-98_CQ_;
KW   Gypsy-98_CQ-LTR; Gypsy-98_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-9027
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 575-575 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [5336-5815] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3023..4009,4013..5911)
FT                 /product="Gypsy-98_CQ-I_1p"
FT                 /translation="MFKDPFLSFSRIKITESCPHITVQIFDRNYEALLDSG
FT                 ASVSVTNVANIAEKHGLTLKESPVRIVTADKTSHDCLGYVNLPISFRGVTK
FT                 VVPTVVVPQVAKELILGFNFWEQFGIQPMVQGENGFEQIEIKQSEQRIESI
FT                 ELSVLPIESFPVITTNEPDESLDIPALELPEPSRITPEAVETEHELSPDER
FT                 EDLVEAIRVFPCTTEGNLGRTTLIEHEIVLKEGAIPKRQPLYKCSPAVQAE
FT                 MEAEIARYKMMDAIEECTSEWASGLVPVRKANGKLRVCLDSRRVNTWTKKD
FT                 SYPMRNMVEIFNRLGKARYYSVVDLKDAYFQIPLKENRDYTAFRTSQGLYR
FT                 FKVLPFGLTNAPFTMSRLMDRVIGFDLEPNVFCYLDDIVVASETFEDHTRL
FT                 LRTVGERLRKAGLTISLDKSRFCRKRVTYLGYLLTDEGVSIDNSRISPILD
FT                 YARPRNVKDIRRLLGLAGFYQRFIREYSRIVAPISDLLKKSKKKFEWTESA
FT                 EAAFNELKAALVSAPILGNPDFSRTFTIESDASDNAVGAALVQEFEDGPRV
FT                 IGYFSKKLSSTQRKYASVEKECLGVLLAINHFRHFIEGSRFKVVTDARSLL
FT                 WLFTIGVESGNAKLLRWALKIQSHDIELEYRKGKNNVLADCLSRSVETLLA
FT                 MSTDQDYQEMIAKIQQDSENHSEYRVVDGQIYKFVKKCGKVEDPRFQWKRY
FT                 PPQAERDDIIRGIHEKAHLGPDKTLEKCRERFFWPGMSSEVKRYCQSCVRC
FT                 QTSKANNQNTTPPMKEQKKVAEYPWQFLTMDFVGPLPASGRNRNTCLLVVT
FT                 DLFSKFVLVQPFRQATAESLVQFVENAIFLLFGVPEVILSDNGTQFVSSLF
FT                 QNLLKKYEVTHWRTPNYHPQVNDSERVNRVITTAIRASIRKDHREWANNVQ
FT                 QIADAIRNSVHEATRYTPYFILFGRNKVSEGFEYRHVRDTSAEGEMNIQNE
FT                 ERERLYK"
XX
SQ   Sequence 9027 BP; 2602 A; 1829 C; 2341 G; 2242 T; 13 other;
     aattggcgcc caactacagg ttcagcggga aattgctgtt ttggttttgt ttgcaatttc        60
     agatattagt tgagatcttg ttggaagaat attcattgtt ttgttgaaaa tatcaattaa       120
     gttggggtta aaattcacgt ttttgtacat tatcgagggt attagtggaa gacttactac       180
     gttcgctgga gaccggagct gcaaagcgtt gatggccagt agcaattcct ttctgtaaag       240
     attggtcttg gaaacagaca cgtaggttct gccgatgacc gtttatgacc ccgaactgtg       300
     ggtaagtcaa tccttaatac agttcctcgg tgtaccgtcg atttgattaa ctagtagaat       360
     tctcgaactc gctggatact aagccagagg ccgtagatac tgatagtacg tgttggaagc       420
     ggtggagaca acgatagttg ttgatgatac tacccgagtt tttgtattct gcctattgtt       480
     caaatcgatt gatccaaatt tgttgattta attggtagtt attagtttgt tggcaaatat       540
     aatttgtaga tttaattggt agttcttagt ttgttggcaa atataatttg tagatttaat       600
     tggtagttct tagtttgttg gaaagtatat taatttggtc aaatacattt gttaaaatga       660
     cggggaaatt tcccaaccct gatcacctca cggaggagga aattgattac gaattgagac       720
     tccgaggaag actcgaggac cttgatttgg ttagagaggc gaaatgtcga gtacttagaa       780
     atttgttcta caatgatgca agaaatgatt atgagtatga tccaccttat acaatggatc       840
     aagattttga tcgcatcacg gttaaggtta gggacttgag ggagaaattg gatgagggtt       900
     ttgatgagaa atgtttgtct cgcctaaggg cgtattttca tcgcgtaatg cgactcgtta       960
     caaccaacga tgacgaaaaa gttagaaaac gkgaactcgc agaagaaatg ttgcaaattt      1020
     ttgtcacttt caacgtaaac ccagataaac aacctgatga gatttcagac ggaactccag      1080
     agaaagagga aacggagaag gaaaacggta acgaaaagct ggagaaggga cagaagacgg      1140
     ttcccaagaa ggacgtaccg aaaacaccgg ggaggacaga caactcagca gcgttacata      1200
     agaggatcga ggatttggaa caacaactat tgagggcatg tttggcatgg tcwggggtgg      1260
     atgctagtca gcctgggcct ttccaaatca atcagagacc cagacatcgt gctgatgagg      1320
     agagccaacc tgaatcgata ccgtgggagg aggaggagga attacgcaga aaaagaaggc      1380
     agaatcgtta ttcactgtgg gatagccgga gacagagagt tgacggagat cgaggccata      1440
     ggcaaggcag aggccaaggg ttccaagaag agagagatcg acaatcaccg ttsgacaata      1500
     accgaccggg ggaattagat cacaggtcta gcaattttga taataatcgt tacagagaag      1560
     ggacccgcag gtcaaaggag atcccggatc agcagcactc aagtcaccga tcgcgagttg      1620
     atgaccgcaa cctgagggag gatttgagac aggggtccca ggagtctagg cgtcctccag      1680
     aacgaagaga tgacctggga cgaaacaatc gctcttctcg ggaagacaat cgtagktcaa      1740
     gggagaaccc ggaacaacgc cacggaagtc gccagtcgtt tctagatgat cgctatcgta      1800
     gtgatgatcc agggcaaggt ccccaggaag ataggtatga gtcaaacggt tacgagtcat      1860
     gggacgaatc gacgcgaaga ggcagtcaac tgttcggaaa tcgtggagac cacaatgagg      1920
     atagcaggtc taggtttagc caccatagtc agttggttga cagagaccac ggacgacatc      1980
     cacgtggggg tgcaccagag agacgaagac atgtcgttcg gaggagaagg catgccggga      2040
     tmggggacgc agagatccaa aacgccgata gacgcatgga gaaatggcac ctcacgttta      2100
     atggggacac cagtcagcgg tctttggaag attttcttca taaagttcat cgattggccg      2160
     aaatggacag aatcgcagaa gacgtgctac tgcaacggat tcatacgata ctgagaggtg      2220
     aggcttacga ttggtatctt tgctatgcgg aggatttcca gcactgggac gacttcgaaa      2280
     tgagtttccg ttacatgtat ggtaatccac atagagatca gagcaaccgt aaaaagattt      2340
     acgggatgaa acagagatct gatgagcctt tcctaaccta caaaatggag attgagaggt      2400
     taaacaaact cttaagggtg ccattggacc aggagagact tttcgaagtg atgtgggaca      2460
     actgtaagga tgcatacaaa gacaggttgg tgtgcagaga gatagagaac ttggttcagt      2520
     tggaatacta cgcggtccgg attgatgcga acgacccaga actggaagcg caaagagagg      2580
     gaacgtccag accaaaatac ggatctaact tcacttcgaa acaccagcga agagggcagt      2640
     ttaaaaacac ccacgagaat gaacgtaact atagggaagg acacgccagg gtagttcast      2700
     acgtcgaggt ggagggtgaa actaaggtat tagactcgtc cgaatcggaa ccggaagaag      2760
     tgaacatgtt ggagcggaaa atggatcagc agccacaagc agaaaagtcg cagacaagtc      2820
     catcctgctg gaattgccat aaaaagggtc atctttggag gcgttgccag gagcggaaaa      2880
     ccatgttttg ttacgtgtgc ggtacaccgg agaaaacggc gattacttgc ccaaaccata      2940
     agaatggttc gggaaactag agcaggagtg tgaggatggg aacatctcca ttccagaggc      3000
     tcaaggagtt cccaattcaa ccatgtttaa agatccgttc ctaagcttca gtcgcatcaa      3060
     gatcaccgaa tcgtgtccgc acattacagt acagatattc gatagaaact acgaagcgct      3120
     tctggactca ggcgccagcg ttagtgtaac gaacgtcgca aacattgctg aaaagcacgg      3180
     tttgackcta aaggaaagcc ctgtgcgaat tgtgacggcg gataagactt cgcatgactg      3240
     cttgggctac gtgaatctac cgatttcttt tcggggcgtt acgaaagtgg ttccaactgt      3300
     ggtagttcct caagttgcca aggaattaat tctaggtttc aatttttggg aacagttcgg      3360
     catccagcca atggtacaag gtgaaaacgg gttcgaacag attgaaataa aacaatcaga      3420
     acaaagaatt gaaagtattg aactttcagt tctaccaatc gaatcattcc cagtcattac      3480
     aacaaatgaa cccgacgaaa gtttggacat tccggctcta gaactacccg aaccttcgcg      3540
     catcacaccg gaagcggtgg agacggaaca cgagctttct cccgacgagc gcgaggatct      3600
     ggttgaggca atccgagttt tcccatgtac taccgaagga aacttaggac ggactacgct      3660
     gatcgagcac gaaatcgtgc taaaagaggg agcaatacca aaacgccaac cgttgtacaa      3720
     atgttctccg gcagtccaag cagagatgga ggcggagata gcacgataca aaatgatgga      3780
     cgccatcgaa gagtgtacga gcgaatgggc gagtgggttg gttccggtca gaaaggcgaa      3840
     cgggaaatta agagtttgct tagactcacg tagggttaac acgtggacta aaaaggattc      3900
     ttatccgatg cggaacatgg tggagatttt taacaggttg ggaaaggcca ggtactactc      3960
     ggtggttgac cttaaagacg cctatttcca aattccgtta aaagagaact scagagacta      4020
     cacggcgttc agaacctctc aaggtctgta caggtttaaa gttctaccgt ttggkctaac      4080
     caacgccccc ttcacgatga gtcggttgat ggaccgtgtt attgggttcg atctggaacc      4140
     aaacgtgttc tgctacttgg acgacatagt cgtagcttca gaaacgttcg aggaccacac      4200
     cagattgcta cgcacggtag gagaacgcct aaggaaggcc ggactgacca tttcgctgga      4260
     caaaagccgg ttctgtagaa aacgggttac ctatttagga tacttactga ccgacgaggg      4320
     agtttccatc gacaattcga ggatttcgcc gattttagac tacgcgcggc cgcgaaacgt      4380
     aaaagacatt cgccgattgc tgggactcgc gggtttttat caaagattca tccgcgagta      4440
     cagtaggata gtagcaccta tctcggatct gctgaagaaa tcgaagaaga agtttgaatg      4500
     gaccgaatca gcagaagcag cgttcaacga gcttaaggca gctttagttt ccgcgcccat      4560
     cctaggaaat cccgatttct cacgcacctt cacgatcgag tcggacgcgt ccgacaacgc      4620
     agtgggagcc gcgcttgtcc aagagtttga ggacggtccg agggtgatag ggtattttag      4680
     taagaaactg agcagtaccc aacgaaagta tgctagcgtc gaaaaggagt gccttggagt      4740
     gctactggca atcaatcatt tccggcattt cattgagggt tccaggttca aggtcgtaac      4800
     agatgcccgt agcctgttat ggttgtttac gataggtgtg gagtccggaa atgcgaaatt      4860
     gcttcggtgg gcactcaaga ttcagtccca cgacatagaa ttggaataca gaaagggtaa      4920
     aaacaacgtt ttggcggact gtttgtcgag gtcagttgaa actttgctgg cgatgtctac      4980
     agatcaagac tatcaagaaa tgattgcaaa aattcagcaa gactcggaga accactcgga      5040
     gtatcgcgtc gtggatggac aaatttataa atttgtaaaa aaatgcggga aggtggaaga      5100
     ccctcgtttc caatggaaac gttacccacc gcaagcagaa agagacgaca taattcgagg      5160
     aattcacgag aaagctcatc taggtccgga taagacgctg gagaagtgca gagaacggtt      5220
     cttctggcca gggatgagta gcgaggttaa aaggtattgc cagagctgtg tcagatgcca      5280
     gacgagcaag gctaataacc agaataccac tccgcctatg aaagagcaga agaaggtcgc      5340
     cgaatacccg tggcagtttc taaccatgga cttcgtgggt cccttgccgg cgtcgggacg      5400
     aaaccgaaat acctgtctat tagtggtcac ggatcttttt agcaaattcg ttctggtgca      5460
     gcctttccgc caagccacgg cggagtcact cgtacaattc gtggaaaatg ctatcttcct      5520
     actgtttggc gtgccggaag tgatattgag cgataacgga actcaattcg tctcatctct      5580
     gttccagaac cttcttaaaa aatacgaggt cactcattgg cgaacaccga actaccaccc      5640
     acaagtgaat gattcggagc gagtgaatcg cgtgatcacg acggcgattc gggcgtcgat      5700
     tcggaaagac caccgtgaat gggcgaataa cgttcaacag atcgcggatg caatacggaa      5760
     ctcggttcat gaagcgaccc gttacactcc ttacttcatt ctgtttggaa ggaacaaggt      5820
     ctcagagggg tttgaatatc gtcacgtaag ggatacgtca gcggaagggg agatgaatat      5880
     ccagaacgag gaaagggaga gactctacaa ggawgttcgg gaaaacttga aactggccta      5940
     cgaaaagcac gccaactact acaacttacg atcgaatgca aactgtgcca cctataaggt      6000
     tggagaaaaa gtcttgaaga agaacacaga gcagtctgat aaaggggcgg gattttgtgc      6060
     taaactggcc ccaaaatatg tgccagcagt ggttaagaga ttagtgggta cccattgtta      6120
     tgacttggag gacttgaatg gcaaacgctt aggcattttc aattgcaaat tcctcaaaaa      6180
     atttagtcaa tagcgtgact caaacaaact tttggctgtt ctttgaatgg tgaatttata      6240
     aagctatgta tcatgaactt tttcttgaaa ctaagactat gaagttgtac tctggtcaat      6300
     gaaatacttt ccagcctcgc gtacagtgcc gcccccacaa taacaaatca tttctactgg      6360
     gtggatgaat gggccttacg tttgagtgtt gctgaagtca gtctagttaa ctcttcaatg      6420
     aaagagagga aactctgaat gaagttgatg tgggagatca gggactgcgt tttgtaaata      6480
     aatctactaa agttcacaaa ggtagtcctc ttaatgtata tacctatcac tagcgcgttt      6540
     aatttcatct agctagttag tagtttaaaa tttatgttga aatattagca gttcgtttgt      6600
     ttatacaatt ttcgtgcaaa atttgttatt tatttttttg tagttagagt cgtggttgtt      6660
     gtttatagtt tgggatagat tttaggaaat gttacaaagt gggttgatcg ttgagtacat      6720
     ttgccaattg aagtcatcct tccttcaggg ggttgagcag ctcccagtcc ggtcgcctaa      6780
     aatagaataa attaaaacct tttcataaac aaaccatcaa ttggaatcca acttcccttc      6840
     aagttcacca ccatccatcc agttagtaaa ttcaattaca attwtcggcc attttctctc      6900
     caacaatagt acattaacac cacatttagt ctcagttaac ttcatttttg cgaaatacac      6960
     caacttttga cgaactaagt aatttttccc acgtttagtt gttttgccgt aaacatgacg      7020
     gtaggtttga cgtttgctgt tgcttgatgc tcgagagagt gaatgaattc tgagagagtt      7080
     catggggtta aggggcgagt tcattccacc ttatttcatt tagccatttc aaatttggcg      7140
     ttagaaattt ggtggacatg gcatggggat atttgatgtt attctcgagt agacagactt      7200
     aatctggcgt tggagaatac atcagggttt taagggtttt gcgtcttgtt cattcagaat      7260
     tagcatacca aggtatacca tggtggattc tgattgaaac agattggggt gaattatgtg      7320
     ggtggacgat tttccaactt ctgtttggag tagtccgaaa cataaggaac ttaaggtttg      7380
     ttgttgtagt gattgagtaa tcgatcggaa attttgggct tgtgttgaaa tgtaaatatt      7440
     tcagtcacaa tgccagaggg aattttcttg gcgatattat tgaggtttca gaggagcaag      7500
     taaacagcaa gcgatcaaaa tttgagagga aagtatgagc ctgtagaaaa gtgggcagct      7560
     gtaaataatg ttgttgaatt aaattgtttg atgttaacat aattttgttt tggcatgttt      7620
     ttgggccgtt gtaaatagtt ggttaaaatt tttgtatata cattgcatta tgttgtccaa      7680
     gttcgtttag tgtataaaag ttttttgttg ggtatacccc tacgaaaatt tggttgtttt      7740
     gcaaccaaat tttcgtaaaa ttagtccaga gttatgtagc gttctacaat tattatttat      7800
     aaatacacta gtacaaatga aacgaacatg gctgattttg aattcgagcg aaatgaatcc      7860
     aaacttgcgt gcgagcttgc atgcaaagca gcaagctcaa gatggattcc gtcggattct      7920
     ctctgctcgt gaccgtctgg agagaaatcg sggacttcgt gacctagcct ctcccatgga      7980
     aactgcaact catgcagctt cccttgttcg atgcaaggtc aagatcaggg gtagggcctt      8040
     aagtggttat gccatgagct gagcgagaag gcagatataa ttgggcggta gagcaagtag      8100
     tcacatcact agccggtccc ggggtcaagg gtaggaagac acgagcgaca gacttgcact      8160
     cggcttgccg attacaagtc cccgtaaccg aacgtacaaa cgctcacctt aggtctgagg      8220
     gcacacggaa ggactcggtc atttcaaccg tgacagtgaa agtgaccgga taggagttct      8280
     tggtttttgc ttcgcgtctt tcagtgttca agtacggtgt gggtttgctt ttgcgactgg      8340
     gtgattaaat tctttttccc gagtaggtcc aagataggaa caagtagtgc cagtgtgcga      8400
     acgtgtgccg tgtgcgttaa gaaggagaac cccaggtaaa ttggaaccct ttgaatcccc      8460
     tcaatccccg gatttccaac tcacggccat ggaacagtcg ttcggcggcc ctcttactcc      8520
     ccgatagaac tggtgcgtcg gcacccgcac tgctggtgtt ccagcatccc cgtccgtgcc      8580
     cgcaggatcc actttccatc gkcccggttg aaaaaccccc ccggtaggac gccgtccgga      8640
     agagggctgc gcacgttacc atcgcgccct gaacacgccc atccaccacg cgcgtgacca      8700
     acgtacaccc atttgcgcgt cggccagcta accccgccga gagcgccgtg agcaggacgc      8760
     ccacctggcg tcgaccttca tcggagagcg cgtgaactaa gttcatcgcg ccacgcggat      8820
     agatatcgag ttgccgccgg aagccggcag gcacgacgct gaggcgtctc gagagaagca      8880
     gcacaccgag tcgagagaag agcagcattg agcgtcagga gcatcgccga gcgtcgcaga      8940
     gcatcccggg agttcaccga tcgtcgcacc acgtgcggtc cccgttcctg tgagagaggt      9000
     taggttgcaa accgcctaac caagcag                                          9027
//
ID   Gypsy-98_CQ-LTR repbase;    DNA;    INV; 740 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-98_CQ_;
KW   Gypsy-98_CQ-I; Gypsy-98_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-740
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 576-576 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 740 BP; 163 A; 175 C; 184 G; 217 T; 1 other;
     tgagtacaac tccccccttt gagactatct ccatgcgcat gtgaatttgg ggttttagcg        60
     aagacacgca ccactaagag ctcggccgag ccaagaaacg aacgaaaaac gcacacgtag       120
     ggaaaatcca gctagctatg tttcgggaac attcakatta gaggcctcaa ctataactat       180
     gctaatccta ggttaatttg tagtttacga tcgtaccgct gtaataaaat catgctttgc       240
     agtaccgtgt ttcctctaaa catgaagtag ttcgttcttt aagcgatttc ccgagaattg       300
     agttgtcctg gcgtaggggt tttctcacat ccgtaccgtg gtagttttag cttcttgtag       360
     tactccgagt tggactgctc gggaatccta gtccctccct tccgatttct agcacgttac       420
     ggggtcttgg ttgggaacct tctaccggtg atgatgatcg tgagtgtgag ttaggttgct       480
     ggtaagttcg tgaggaccta tcagatgatt tttggtatcg gttatcgggt gtgtcgaacc       540
     ctctaccgcc tctttatctc tccggattgc tctgtctgat ggtaggacga tttttgatta       600
     cccgccctga ggtctgggtt tcatgctggg caagttaacc tgcacgagtg gtcctttttc       660
     caaaggtggc gcttaagcca ctcgttacag tcctgcgaca atccgaagac ggtcacgtgg       720
     ccgctaccca gcgggctaca                                                   740
//
ID   Gypsy-99_AA-I repbase;    DNA;    INV; 4529 BP.
XX
AC   supercont1.75;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-99_AA_;
KW   Gypsy-99_AA-LTR; Gypsy-99_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4529
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.75; Positions  898779  894251.
XX
CC   'GTCCC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..4505
FT                 /product="Gypsy-99_AA-I_1p"
FT                 /translation="MNAEQFELFMQQQNSVLREIVSSFQNVQVQQRQLPEG
FT                 RQQPQLQMAANSAASSILLPPPLELSGDMEENFDFFSTNWKNYASAMGMDE
FT                 WPQEQDRQKTSILFSIIGSAALKKFFNFELTEEQRRSPDAALEAIKAKVVR
FT                 ERNKIVDWFEFFSLMQQSMELIDDYVTRLKCLAKLCKFGALEEDLIVYKIV
FT                 TSNKWPKLRSKMLTMQNLTEVKVVDLCRAEEIAEKHASAMGACSVEVNMIR
FT                 KKNLKCKYCGDRHQFAKGICPALGKKCNVCGGKNHFAKVCKSDRMQKGKSR
FT                 RKVKKVQEDCSDLDDTDSVSSDNEESECSGDEAVIGKVYDFWRNVMADVEL
FT                 FVDGKWKVVQCELDTGANTSLVGHNWLKEVGGGNQLELLPSKYRLQSFGGG
FT                 AIPVLGEVRLPCKAKNRKYTLALLVVDVPHKPLLSAKVCKKLGFIKFCNSV
FT                 SITSPLPEEQLLNVYRIRAQQIIDQHSSIFEGYGKFPGVVSLEVDPDVAPS
FT                 IQQPRRVPIAMRDKLKKELKKLEQDGLIIKETQHTDWVSNIILVRRNGKDS
FT                 DSIRICLDPIPLNRALKRPNLQFTTIDEILPELGKAKVFSTVDAKKGFWHV
FT                 VLDRSSSLLTTFWTPFGRYRWIRLPFGIATAPEIFQMKLQEVIQDLEGVEC
FT                 IADDILIFGTGDNLQQALVNHNVCLEKLLIRLEENNVKLNKAKLRLCMTSV
FT                 KFYGHVLTTRGLQPDESKVETIKSYPRPQDRKELQRFIGMVNYLSRFIPNL
FT                 SSNFAVLRRLISDKEPWVWTDKEEEEFVRVKSLVADTRSLQYYDVNQPLII
FT                 ECDASSFGLGTAVFQSQGVIGYASRTLTSTERNYAQIEKELLAILFSCVRF
FT                 DQLIVGNPKTIVRTDHKPLVNVFKKPLLSAPKRLQHMLLSLQRYNLEIQYV
FT                 KGKENIVADAISRAPLDGELPEDQFKKRNIYQVFRQLEEVNPSKFLRITDE
FT                 RLTEVIQETARDSSMQQIIRYILEGWPTSVDKVPDGVKIFYKHRNELSHQD
FT                 GIVFRNDRVVIPYRMRRTMTEKVHVSHNGVEGTLKLACANLFWPGMTTQIK
FT                 DAVSQCAVCAKYAASQPAPPMQSVAIPVHPFQLVSMDVFFADYQGEKRKFL
FT                 VTVDHFSDFFEVDLLKSLTPLSRHGKPQLVITDNGTNFVNKEWRQFAIEWE
FT                 FQHSTSAPYHQQANGKSEAAVKIAKRLMKKSEESGVDFWYALLHWRNIPNK
FT                 IGSSPAARLFSRSTRCGLPTSLENLMPKPVQNVPSSIEEARRKTKYQHDKA
FT                 ARNLPILETGSPVYVQLHPESTKHWTPGSVTSKMNDCSYLVNVDGALYRRN
FT                 LVNLKPRKEPDTPVQSTMPSANESSVPLEAPSRDTVEVATFTPEETVSNQS
FT                 SSELNELLVRSDTLAIPMHQPTKLPSIQECESSGRLVRNERPKREKRLPCK
FT                 LKDYDLN"
XX
SQ   Sequence 4529 BP; 1328 A; 902 C; 1143 G; 1156 T; 0 other;
     tggtgtcaga agcaaaaggc ttcaaaaagt gtttccggcg tcattaaatc gcggaagtga        60
     agaaagcgag gaaaaacaca agctcgggga gtgaaaaaat catttgcctt gattttgttt       120
     ccgtcgtgcg ctcgtccgaa tgtgagccgg tcggtaccag tgcggcagcc atattttttt       180
     cgcgtcttgc gaagtgttgt gtgttttccc ggaattaaat ccaaaacgat ctcggtttcg       240
     aaatgaatgc cgagcagttc gagcttttca tgcagcagca aaatagtgtg ctgcgagaaa       300
     ttgtgagttc gttccaaaat gttcaagtgc aacaacgaca gctgccagaa gggcggcagc       360
     agcctcaatt gcaaatggct gccaactcgg cggcttcgtc catcctgctt cctccacctc       420
     tcgagcttag tggagacatg gaggagaatt ttgatttttt ttctacgaac tggaaaaatt       480
     acgcgagtgc tatgggtatg gatgagtggc cccaggagca agacaggcaa aaaaccagta       540
     ttttgttttc gataatcggt agtgcggcgc ttaaaaagtt ctttaatttc gagttgacgg       600
     aagaacaacg gcgttcgcca gacgcggctt tggaagcaat aaaagcaaaa gtagtgcgcg       660
     aaagaaacaa aatcgtagac tggttcgaat ttttttcgct catgcaacaa tctatggaat       720
     tgatcgatga ctatgtcaca cgtttgaagt gtttggctaa gttgtgtaaa ttcggtgcac       780
     ttgaagaaga tttgattgtc tacaagattg ttacctctaa caaatggcca aaattacgtt       840
     ctaagatgtt aacgatgcaa aacttgacgg aagtgaaagt tgtggatcta tgtcgagcag       900
     aagaaatcgc cgaaaaacat gccagtgcta tgggtgcttg tagtgttgaa gtgaacatga       960
     tcagaaaaaa gaatttaaaa tgcaagtatt gtggcgatcg gcatcaattc gccaagggga      1020
     tttgccctgc actggggaag aagtgcaatg tgtgtggtgg caaaaaccat ttcgcgaaag      1080
     tgtgtaaatc agaccgaatg caaaaaggca aaagccggcg aaaggtgaag aaagtgcaag      1140
     aagactgtag tgaccttgac gacacggaca gtgttagcag cgataacgag gaatccgaat      1200
     gcagcggtga tgaagcagta attggaaaag tgtacgattt ctggcggaat gtgatggcgg      1260
     atgtggagct gtttgttgat ggcaaatgga aagtagtgca gtgtgagctg gatacaggag      1320
     ccaacactag tctggttggc cataactggc taaaagaagt aggtggcggt aatcagctgg      1380
     aactattgcc ttcaaaatac cggctgcaga gcttcggtgg cggggccata ccggtccttg      1440
     gtgaagtaag gttgccttgt aaggcaaaga accgtaagta cacactcgca ttgctagtcg      1500
     ttgatgttcc ccataagccg ctcttgtccg caaaagtttg caaaaagctg ggtttcatta      1560
     aattttgcaa ctcggtttcg atcacttcac cactcccgga ggaacaactg ttgaatgtct      1620
     accggattag agctcagcag atcattgacc agcacagcag catattcgag ggctatggta      1680
     aatttccggg cgttgtatcg ctggaagtgg atccggatgt tgcaccgtct atacagcagc      1740
     cacggcgtgt accaatagct atgcgtgaca aattgaagaa ggagttaaaa aagcttgagc      1800
     aggatggtct tattatcaag gaaacgcagc atacggactg ggtcagcaat attattcttg      1860
     ttaggcggaa tggtaaagat tcggattcga ttcggatctg tttggatccg attccattaa      1920
     acagagcatt aaagcgacca aacttgcagt ttacgacgat cgatgagata ttgccggaac      1980
     ttgggaaggc aaaggtgttc tctacagtag atgccaagaa gggtttctgg cacgtggttc      2040
     tggatcgttc cagcagtctt ctaaccacat tttggacacc tttcggaagg taccgttgga      2100
     tccgcttacc tttcggcatt gcaactgctc cagaaatttt tcaaatgaaa cttcaggagg      2160
     tgatccagga tcttgaaggc gtggaatgca ttgcggatga cattttaatt ttcggtactg      2220
     gcgataatct gcagcaagct ctggtgaacc acaacgtgtg cctagagaag cttcttatcc      2280
     gtttggaaga gaacaatgtg aagctaaaca aggctaagtt gaggctgtgt atgacatcag      2340
     tcaagtttta tggacacgtg ctgactactc ggggactaca gccggatgag agcaaggtgg      2400
     aaactataaa aagctatccc agacctcaag atcgcaagga acttcagcgt ttcataggga      2460
     tggttaatta tctcagccgt ttcattccaa acttgagctc caattttgcg gtactgagac      2520
     gacttatttc ggacaaggaa ccttgggttt ggacggataa ggaagaagag gagtttgtcc      2580
     gtgttaagtc tttggtagcg gatactaggt ctttgcagta ttatgatgtc aatcagccct      2640
     taataatcga gtgtgatgcg agttcctttg ggttgggaac agctgtcttt cagtctcagg      2700
     gagtaatcgg ctatgcgtcc cgcactctaa cgtcgactga aaggaattac gcccagatag      2760
     aaaaggaact tcttgccatt ctattttcgt gtgttcgatt tgaccagctt attgtgggta      2820
     acccgaagac gatcgtaaga acggaccata aaccgttggt aaacgtgttt aagaaaccac      2880
     ttttgtctgc tccaaaacgg ttgcagcaca tgctgctgag cctacagcgc tacaacttgg      2940
     agatacaata tgtaaaagga aaagaaaaca ttgtagctga tgctatttct cgggctccac      3000
     tggatggaga acttcctgaa gatcagttca agaagcggaa tatttatcaa gtttttcggc      3060
     agctggaaga agtaaaccca agcaagttcc tcagaatcac cgatgaacgt ttaaccgagg      3120
     tcatacagga aacagcaaga gattcgtcaa tgcaacagat cattcgatac atcctggagg      3180
     gttggcctac gtcggtagac aaggttccag atggcgtgaa gattttctac aagcatcgga      3240
     atgagctcag ccaccaggat gggatagttt tccggaacga tcgtgttgtt attccttatc      3300
     gaatgcgacg tacaatgact gagaaggtac atgtaagtca caacggagtc gaaggaacgt      3360
     taaagctagc ttgtgccaat ttgttttggc caggtatgac cacacagatc aaggacgctg      3420
     tttctcaatg tgcagtatgt gcaaaatatg cagcctccca accagctcct cctatgcaaa      3480
     gtgttgccat accagtacat ccatttcaac tcgtatctat ggacgtgttt tttgcggatt      3540
     accagggtga gaaaaggaaa tttctagtaa ccgtagatca tttttcggat ttttttgaag      3600
     ttgatctgtt gaagagtttg actcccctct cgcgtcacgg aaagccacaa ctggtgatta      3660
     cagacaatgg gactaatttt gtaaacaagg aatggaggca gtttgcgatt gaatgggagt      3720
     ttcagcattc gacatcagct ccctatcatc aacaagctaa tgggaaatcc gaggcggctg      3780
     ttaaaattgc gaagagattg atgaagaaat ccgaagaatc aggcgttgat ttttggtatg      3840
     ccctgttaca ttggcgcaac atacccaata aaataggatc gagtccagca gcgcgcctat      3900
     tctcacgcag tacacgctgt ggattaccaa cgtcgttgga aaacctaatg ccgaaacccg      3960
     ttcaaaatgt tcccagcagt attgaagaag ctcggcgaaa gacaaaatat caacatgaca      4020
     aagcagcaag gaacctaccg atactggaaa caggttcacc ggtttacgta cagttgcatc      4080
     ctgaatcaac gaagcattgg actcctggat cggtcaccag taagatgaat gactgctcat      4140
     atttagtgaa tgtagatggt gctctctatc gtcgaaattt ggtcaacctg aagccacgta      4200
     aagaacctga tacgcctgta caatctacta tgccttctgc aaatgaatca agcgttccat      4260
     tggaagcacc ttcaagagac accgtggaag tagcgacatt tacacccgaa gaaaccgtat      4320
     cgaatcagtc ttcatctgag ttgaacgagt tgttggtaag atcggatact ttggcgattc      4380
     cgatgcatca accgacaaaa ttgccatcca tacaagaatg tgaatcgtca ggacgactgg      4440
     taaggaatga aaggccaaaa agagaaaaac gtttgccgtg taaattgaaa gactatgatc      4500
     tcaattagct tttcacagaa aggggaaga                                        4529
//
ID   Gypsy-99_AA-LTR repbase;    DNA;    INV; 189 BP.
XX
AC   supercont1.75;
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   18-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-99_AA_;
KW   Gypsy-99_AA-I; Gypsy-99_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-189
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Direct Submission to RU (23-DEC-2010).
XX
DR   Genome; supercont1.75; Positions  894250  894062.
XX
SQ   Sequence 189 BP; 52 A; 32 C; 37 G; 68 T; 0 other;
     tgttatggta ttgttacgta gcttttgaat atccctcagt ttgtagtttg tcaacgctcc        60
     cctattcaac aagactttag cttacagtta aaggtagtca gtttgagtag agactttgta       120
     tcgtacgaac gcagtgaata aaagctcatg tgaatttgtt aaacctgtgt tttcgttcgt       180
     actaaaaca                                                               189
//
ID   Gypsy-99_CQ-I repbase;    DNA;    INV; 4177 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-99_CQ_;
KW   Gypsy-99_CQ-LTR; Gypsy-99_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4177
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 577-577 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1556-2059] - Reverse transcriptase
CC   Positions [3194-3661] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2816..4153
FT                 /product="Gypsy-99_CQ-I_3p"
FT                 /translation="MIDLEVIGRETQRDALLSTLFQLVQSGWDESNVPADL
FT                 KFYFANQSCLSLFNDCVLYSEKVIVPKSCQKRVLELMHGCHLGVIRMKQEA
FT                 RRYVYWPGLDKDIEEFVQRCEVCSKTGRMPKKVYSKWPEASRPFERVHLDF
FT                 FHFAGKTFLIVVDAYSKWIDVRLMSRTDSDSLINALNSVFRIFGKSDLIVS
FT                 DNGPPFNSQAFVDYARRMKIELKKSPAYSPESNGLAERGVQTAKSGLKKLM
FT                 ADPKYGSCKIPELVEVFLFSYRNSYCQALGCSPASKIFSFVPKTDLDSNLK
FT                 PKQEKVKKRVRFDLRVKEKVIDKRESVNEKPRVRKNDDYAVGDLVWYRCEY
FT                 KTMRSWLEAVIVGVNSKNTYYIEVSGNTKLASRNQLKRRVVEKNDYIYPKV
FT                 EPNVIVTPKKRYKRRREKSSPLKTPERPAKLRRSKRVRRRPERYEVFRFHK
FT                 M"
FT   CDS           join(140..1018,1022..2362)
FT                 /product="Gypsy-99_CQ-I_1p"
FT                 /translation="MTKPEEEEKNAGAAEHAMKLIGTLENFVPSADFDDYL
FT                 ERAENFFELNCITDDEFKRKLIVHFIGLPALKKLQQLLYPKTHKQSTYKEV
FT                 TDKLKSYFSPQKNRIAQSVEFFKRSQHEYEKVADFAVELQALSKHCVFEQF
FT                 LDAALRDKFIAGLRNAKIQAELMNSPDNTKFDEAVTKAKNLEQIEEDQQKM
FT                 KAKQQYANRVNGGNFNRRNRSQSRKPEQSERGQRSSSRGRPSSRGGPRGRK
FT                 DFRCYACGKKGHMARSCWSNKANVVNRSDDDSVVDSDDEVNHVVNVPLFKR
FT                 LLDGKWLEFEIDSGASYTIISVNDYRENFARLKLQKCEVRLRVISGTMLNI
FT                 AGSIRVRVKCDGRSYTMTLIVIDGKSTFHPLLGRDWLDVLYPEWRQFFENE
FT                 VAEVDQSEVKLDSTRTTLLSNLNARYHDLFTKNLEEPIETFEASVVLKEDA
FT                 RPIFYRPYEVPFALKEKVSSELDRLVREKILVPVKHSEWASPIVVVPKADG
FT                 SVRICMDCKVTVNKAICTEHYPLPNISDVFANLSGYRYFAKIDLQGAYMQV
FT                 RVSEDSQKYLVINTHKGLFAYQRLPFGISNAASAFQFIMTEGILKGVEGVQ
FT                 CYLDDILLGSETVEGLVDKIHEVLGRLKEFKVKVNLEKSEFLVKKIAYLGH
FT                 QVSEKGLSPSEEKVKAIVDAPRPKDVSQLKSFLGMINYYSKFVPNLSVKLC
FT                 PLYALLKKNVQFKWSAECESAFDKCKKLLLSNRLLELYNP"
XX
SQ   Sequence 4177 BP; 1104 A; 888 C; 1241 G; 942 T; 2 other;
     ttggcgacga aggaaaatag caacgaggtt gctggtaacg cgtggagtag tcgagtaagt        60
     agagtgatcg gaagggagaa gtttgccgtg gacgccaaaa accacgtgct gtgtgatcgt       120
     agtgctcgag gtcagtgcca tgacgaagcc ggaagaagaa gagaagaacg ccggcgcggc       180
     ggaacacgcg atgaagctga tcggaacgct ggagaatttc gttcccagtg cggatttcga       240
     cgactaccts gagagagccg aaaacttctt cgagctgaac tgcatcacgg atgacgagtt       300
     caagcggaag ctgatcgtcc attttattgg cttgcccgcg ctgaagaagc tgcagcagtt       360
     gctgtacccg aaaacccaca agcagtcgac gtacaaggag gttaccgaca agctgaagtc       420
     gtacttcagt ccccagaaga accggatcgc ccagtccgtg gagttcttca agcgaagcca       480
     gcacgagtac gagaaggtcg cggatttcgc ggtcgagctg caagccctgt cgaaacactg       540
     tgtcttcgaa cagttcctcg acgcagccct gcgcgacaaa ttcatcgccg gcctacggaa       600
     cgccaaaatc caggccgagc tgatgaacag cccggacaac acgaagttcg acgaagccgt       660
     cacgaaagcc aagaatctgg agcagatcga ggaggaccag cagaagatga aggccaagca       720
     gcagtacgcc aaccgagtca atggcggaaa cttcaaccga cgaaaccgtt cgcagtcccg       780
     gaagccggag cagtccgaga gaggccagcg cagcagttcg cgaggcagac ccagctcgcg       840
     aggaggacca cgtggccgca aggatttccg ttgctacgct tgcggaaaga agggccacat       900
     ggcgcggtcg tgctggagca acaaggcgaa cgtggtgaac cgcagcgacg acgacagcgt       960
     ggtcgactct gacgacgagg tcaaccacgt ggtgaacgtt ccgctgttca agaggttgtg      1020
     actagacggt aagtggctgg aattcgagat cgactctggg gcatcctata ctattatcag      1080
     tgtgaacgac taccgagaaa attttgcgcg cttgaagctg cagaagtgtg aagtgaggtt      1140
     aagggttatt tcgggcacga tgttgaacat tgcggggtca atacgggtga gagtgaagtg      1200
     cgatggccga tcgtacacga tgaccttgat cgtgatcgac gggaaaagca cgttccatcc      1260
     gttgctcggg cgagactggt tagatgtgct gtacccggag tggaggcaat tttttgagaa      1320
     cgaggtcgca gaggtcgatc aaagtgaggt taagttggac agtactcgca ccacgttgct      1380
     ttctaacctc aacgcacgct atcacgactt gttcaccaag aacttggaag aaccaatcga      1440
     gacttttgaa gctagtgtgg ttctgaagga ggacgccagg ccgatcttct accggccgta      1500
     cgaagttccg tttgccctga aggagaaagt gtccagtgag ctggataggt tagtgcgtga      1560
     gaagattttg gttccggtca agcacagtga gtgggcatcg ccgatcgtgg ttgtgccgaa      1620
     agcagacggt agtgtacgga tctgtatgga ctgcaaagtg accgtgaaca aggcgatctg      1680
     taccgaacat tatcctttgc ctaacataag tgatgttttt gcgaacctaa gtggttaccg      1740
     gtactttgcg aagatcgatc tgcaaggggc gtacatgcag gttagagtgt cggaggattc      1800
     ccagaagtat ctggtgatca acacgcacaa gggacttttt gcctaccaga gactaccctt      1860
     cgggatctca aacgcggcct ccgcgttcca gtttatcatg actgagggca ttttgaaggg      1920
     ggtagaagga gtccagtgtt atctagacga cattttgttg ggaagtgaga ccgttgaggg      1980
     gttagtggac aaaattcacg aggttctggg acgactgaaa gagttcaagg tcaaggtgaa      2040
     ccttgagaag agcgagttct tggtcaagaa aatcgcttat cttgggcatc aggtttctga      2100
     gaagggtctc agtccgtcgg aggagaaggt caaagcgatc gtagatgcac caaggccgaa      2160
     agatgtgtcc cagctgaaat cgttcctcgg aatgatcaac tactactcca agtttgtccc      2220
     caatctgtcc gtgaagttgt gtcccctgta cgcgctgttg aagaaaaacg ttcagtttaa      2280
     gtggtctgct gagtgtgaaa gtgcgttcga caagtgcaag aagctcctgt tgagtaaccg      2340
     actcctagag ctgtacaacc ctgakctacc gatcgtggtc gtgtgcgacg cgagcttgaa      2400
     tggcgtggga gccgttctgt gccacagggt tggtgacgtg gaaaagcccg ttttctacgc      2460
     gtcgagcact ttgtccgctg ctgaacgaaa ctacccgaat ctgcatcgag aagctcttgc      2520
     cgtggtcttt gccctgacga agttcttcaa gtacatctac ggtaagcagt ttacggttgt      2580
     caccgacaac aagccgttag cagccatttt ggaccagaag agaggtctgc cgccgttggc      2640
     cgcggcgcgg ttgcagaaat acgtgtattt gctttcgatt tttgaatttg ggatcgtgta      2700
     tcgcaagggg tcgaagattc caaatgcgga cgctttgagt agactaccgg tttctggtac      2760
     caccggggtc gactcggaga ttgctgagct gttgagcgtg accgaggagt cagccatgat      2820
     cgatctggag gtcataggcc gggaaactca gagagatgct ctgctgagta cgcttttcca      2880
     gctggtgcaa agtgggtggg acgagagtaa cgtacccgcc gacctgaagt tttacttcgc      2940
     aaaccagagt tgtctgtcgt tgtttaacga ttgcgtactt tattcggaaa aagttattgt      3000
     tccgaagtct tgccaaaaac gtgttctaga gctgatgcat ggttgtcatc ttggagtgat      3060
     ccggatgaaa caagaagctc gacggtacgt ttactggccg gggttggaca aggacatcga      3120
     agaatttgta cagcggtgtg aggtttgcag taagaccgga agaatgccga agaaggttta      3180
     ctcgaagtgg ccggaggcaa gtagaccgtt cgagagagtc catctggatt tctttcactt      3240
     cgctggaaaa acgtttttga ttgtcgttga cgcctactcg aagtggatcg acgtgaggtt      3300
     gatgagtaga accgattcag attcgctgat taacgctttg aactctgtgt tccgtatttt      3360
     tgggaaaagc gatctgatcg tcagcgataa cggaccgccg tttaacagtc aagcatttgt      3420
     ggactacgcg agacggatga agattgagct gaagaagagt ccggcgtatt cgcccgaaag      3480
     taatggtctt gcggaaaggg gggtccagac agccaaaagc ggtttgaaga aactgatggc      3540
     tgatccgaag tacggtagct gtaagattcc ggaactggtt gaggttttcc tgtttagtta      3600
     ccggaacagt tactgccagg cgctagggtg ttcgcctgcg agcaaaatct tttcttttgt      3660
     gccaaaaacc gatttggaca gcaatttgaa gccgaagcaa gaaaaggtta agaaaagggt      3720
     tagatttgat ctgcgggtca aagagaaggt cattgataag cgggaaagtg tcaatgaaaa      3780
     gccaagggtc aggaaaaacg acgattacgc tgtaggagat cttgtgtggt accgttgtga      3840
     gtacaagacg atgagatctt ggttggaagc cgtgatcgtg ggtgttaaca gcaagaatac      3900
     gtactacatt gaggtgtcag gtaataccaa gttggctagc aggaaccaac tgaagagaag      3960
     agttgtggag aaaaacgatt atatttaccc aaaagttgag cccaatgtaa ttgtaacacc      4020
     taagaagaga tacaagcgaa ggagagagaa gagttcacct ctcaagacac ctgaacgacc      4080
     tgcgaagttg cgtaggagta agcgtgtcag gagaagacca gagagatacg aagtttttag      4140
     attccacaaa atgtaatttt gaatttaagc ggggaag                               4177
//
ID   Gypsy-99_CQ-LTR repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-99_CQ_;
KW   Gypsy-99_CQ-I; Gypsy-99_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-226
RA   Jurka J.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 578-578 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 226 BP; 67 A; 43 C; 34 G; 78 T; 4 other;
     tgttaagtat ccctcgttta gstggtctag atcakwgtaa ttgtatcttg aatctcttta        60
     attatattgc aagtgtgttg catttctagt acctaagcta tttcctgtas gcaccctata       120
     taaaccattg ttacactatt gtattcctct ttcccgatcc agcagttgaa gaataaagtt       180
     caaaggtaaa agtgaaacta gtcttttaat ccgcaccaaa aagaca                      226
//
ID   Gypsy-9_AA-I repbase;    DNA;    INV; 4376 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_AA_;
KW   Gypsy-9_AA-LTR; Gypsy-9_AA-I.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4376
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 987-987 (2011).
XX
DR   [2] (Consensus)
XX
CC   Positions [1624-2064] - Reverse transcriptase
CC   Positions [3401-3865] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           733..2895
FT                 /product="Gypsy-9_AA-I_1p"
FT                 /translation="MNRNVSVILGTSFSTGRTQQSFQGKFRSIPVCYACGK
FT                 RGHVRGSDFCPARSAACLKCKGTGHFAKQCLKRVNDSNRNPIPTKRIRVVQ
FT                 DDNPDKKDSEYIFYAMGENIFMFNVGGIEIPMVIDSGVAANIISQKTWEEM
FT                 KCMKVSVWDMSTDVDRNFTCYASNEPMHISGSFMTMIQAGERKCDAKFYVA
FT                 RSGQQNLLGDETAKALHVLKVGFDIGSVSKSPQAEFPKFKGVTVEIPIDET
FT                 IQPVQQAFRRAPYALEDKVNEKLKTLQEQGIIERVTGPSSWVSPMVPVLIT
FT                 SGDIRLCIDMRRANQAVIRETHLLPLVDEILGSVTGAKRFSKIDVKDAYHQ
FT                 LEISERSRPITTFITKNGLFRHFVQNISFRYKRLMFGISCAPEIFQKTMKS
FT                 ILAGLEGVIIYLDDVVVFGSTEEEHYNRLQALLKRLQEYNVLLNKDKCIFG
FT                 TNEIEFLGHVLSEKGVSPTESRIEAIRKFRELKTVAELRSFLGLITYVGRF
FT                 IPNLAAKTEPLRMLLRKSAAFSWKAEQSKAFNMIKEAVCDIRCLGFFDRRD
FT                 RTKLIVDASPEGLGAILLQENKDGQNRIISFASKALTDLERKYFQTEREAL
FT                 AIVWGVERFSLYLLGTKFVLITDCKALKYLFSPRSRPCPRIERWVLRIQSY
FT                 NYEVKYEPGVTNLADALSRLSIDNKKPFDTTAECYIKRKITIIVLQNFKTS
FT                 FSAQNRSNVHENLSLHCPDCL"
FT   CDS           3134..4117
FT                 /product="Gypsy-9_AA-I_2p"
FT                 /translation="MFKCFKSEIHSAKGVLLRGDRLIIPEALRLQVLKCAH
FT                 DGHPGMTVMKRRLRQKVWWPKLDDSVDKFVKQCGSCTLVSAIGPPEPMLRT
FT                 RMPDKPWGEVAVDFLGPLPSGHSLLVLIDYFSRFTEVIVMKQTTTDLTIQA
FT                 LFETFSRFGVPEALKSDNGPQFVSDSFKAFCREFGIEHQKTTPYWPQTNGE
FT                 VERMNNTILKRLKISQAENPAKWKWDLRSFLLMYNSTPHSTTGEAPSALMF
FT                 GRILRDKIPSILNSNRPWVEDIRDRDWERKVSTAESADHDRNALPNQLEEG
FT                 DIVVAKRITKENKLSTNYNKERFKKVNRHGSEAEIR"
XX
SQ   Sequence 4376 BP; 1444 A; 810 C; 964 G; 1158 T; 0 other;
     ttggcgacga gtataaatgt ttagtttatt attccttctt tctttttggt tttataacca        60
     aacttgatat attatatcag gagcatcatg gatactcgca tcaaaccatt ccaaactacg       120
     ttggaatctt cgcaattgcc attggcatgg gccaaatgga aacgtgacat tgaatgctat       180
     tttgaatcag aaaagatcga agggcagtat gaaaagcgtt caaaactgct ctacctggga       240
     ggttcagatt tgagagatat tttcgataat cttccggaag tcgaaacagt gtcaatggtt       300
     ttgatcgatc ctccttatta cgatgcagca atcgcaaaat tagatgcgca tttcgagcca       360
     tatcgtagaa ggacctacga acgtcatcta tttcgtcaga ttactcagaa atcgtccgaa       420
     cgttttgcgg atttcgtgct gaggttgaga acacaagtaa agagatgtga atacgacaaa       480
     ccagaggaga tgattcttga tcagatagta gagaagtgct attctgacaa gctccgacag       540
     aaattgttga aacgcgacat gttgttgact gaagttgaag gcctaggtac aagtttggag       600
     gaaagtgagc ggaagatgaa ggaattcgga aaacattgtg agcctagcga cccgatcagt       660
     aaagtaacta aatggaaacc tgaacataca aaacgtgact cagcgggtaa attattgtaa       720
     ttttgtttta aaatgaatcg taatgtttca gtcattttag gtacaagctt cagcacaggc       780
     agaacacaac aatcatttca aggaaaattt cgatccattc cagtatgtta cgcatgtgga       840
     aaacgtggtc atgtaagagg atctgacttt tgtcccgcta gatcagcagc gtgtcttaaa       900
     tgtaagggca ccggtcattt tgccaaacag tgtctaaagc gagtaaatga tagcaaccga       960
     aatccgattc cgacaaaacg tataagagta gttcaagacg ataatcctga taagaaagac      1020
     agcgagtaca tattctacgc catgggagag aatattttca tgtttaacgt aggcgggatc      1080
     gaaataccga tggttatcga ttctggcgtg gctgcaaaca tcatcagtca gaaaacgtgg      1140
     gaggagatga aatgcatgaa ggtatctgtg tgggacatgt ctactgatgt tgatagaaac      1200
     tttacatgtt acgcttcgaa cgaaccgatg cacatctccg gtagcttcat gacaatgatc      1260
     caagctggag agagaaaatg tgatgcaaag ttctatgttg caagaagtgg acaacaaaac      1320
     ttgttgggcg acgaaactgc aaaggcattg catgttttaa aagttggttt cgacattggt      1380
     agtgtttcca aatccccgca agccgagttt ccgaaattca aaggcgttac ggtagaaata      1440
     ccaattgatg aaacgattca acccgtgcaa caagctttcc gtcgtgctcc atatgctctt      1500
     gaagacaagg tgaacgagaa gctaaagacg ttgcaagaac aaggaataat cgaacgagta      1560
     actggtccat cgtcctgggt ttcaccaatg gttccagtgt tgataacatc aggagacatc      1620
     cggctatgta tcgacatgcg tcgagcaaat caggcggtca taagagaaac acaccttcta      1680
     cctttagtag atgagatcct tggatcagta accggggcga aacgtttctc caaaattgac      1740
     gttaaagacg cgtaccatca gttagaaata tccgaaaggt ctcgccctat tacaactttt      1800
     atcacgaaaa acggtctttt caggcatttt gttcaaaata tttcctttag atataaaaga      1860
     ttgatgtttg gtatcagttg tgctccagaa atcttccaaa agacgatgaa atcgatttta      1920
     gcaggtttgg aaggcgttat catatatctt gatgacgtag tagtgtttgg atcgacagaa      1980
     gaagaacatt ataatcgtct tcaagcactt ttgaaacgtt tacaagagta taacgtcctt      2040
     ttgaataagg ataaatgcat attcggaacg aacgaaatcg aattcctagg tcatgtgctg      2100
     agtgaaaagg gtgttagtcc gacggagagc cgcattgaag caattaggaa attcagagaa      2160
     cttaagaccg tagcagagct gagaagtttt ctaggtttaa tcacgtatgt tggacgtttc      2220
     attccaaacc tagcagctaa aacagagcct ttgagaatgc tcctgcgaaa aagtgcagca      2280
     ttttcctgga aagccgaaca gagcaaggcg tttaacatga ttaaagaggc agtctgtgat      2340
     attagatgtc tgggattctt tgaccgaaga gatcgaacga aactgatagt tgacgcaagt      2400
     ccggaggggt taggagcaat actactccaa gaaaataagg atggccaaaa tcggattatt      2460
     tcttttgcca gcaaagccct tactgattta gaacggaaat acttccaaac tgaaagggaa      2520
     gcactagcaa ttgtttgggg agttgaaagg ttcagtctat atctgcttgg caccaaattt      2580
     gttcttatca cggattgtaa agctctaaag tatttgttta gtcctcgatc ccgaccatgc      2640
     ccaagaattg agcgctgggt actacggatc caatcgtaca attatgaggt taagtacgaa      2700
     cctggagtaa ctaatttggc cgatgcttta tctagattgt caatcgataa caaaaaacca      2760
     ttcgatacaa cagccgagtg ttacattaag aggaaaataa ccatcatcgt tttacaaaat      2820
     ttcaaaacca gtttttctgc tcaaaatcga agcaatgttc atgaaaatct atcattgcat      2880
     tgccctgact gtctgtaatg caatgataga tttttataac gtttccttaa aatttgaacg      2940
     aaaaaactgg tttttagttt tcgatgattg ctgatgattg aatgatggat tcttgagcct      3000
     taattatctt ttggacaact cggttccgga agcagtcact cttacacagg tggctgatgc      3060
     gacaagaaat gataaaactc ttcaagagct attgaaagca ctacgatcag gatcttggtc      3120
     ggatgaaata caaatgttca agtgtttcaa atctgaaata cattcggcaa aaggagtact      3180
     attgagaggg gatagactga taattccaga agcacttcgt cttcaggtac tgaaatgtgc      3240
     acatgacggt catcctggaa tgaccgtaat gaagcgtcgt ttgaggcaaa aagtatggtg      3300
     gccaaaatta gacgattctg tcgataaatt tgtaaaacaa tgcggatcat gcacacttgt      3360
     ttcagcgatc ggacctccag aaccaatgct tcgtactaga atgcctgaca aaccttgggg      3420
     tgaagtggcc gttgattttc taggtccttt gccgtcagga cattcgttac ttgtactaat      3480
     cgactatttc agcagattca cagaagttat cgtgatgaag caaacaacga cagaccttac      3540
     aattcaagct ttattcgaaa cattcagccg ttttggagtt ccagaagcat taaaatcaga      3600
     caatgggcca cagtttgtca gcgattcatt caaagctttt tgtcgtgaat tcggtataga      3660
     acatcaaaaa actacgccat actggcccca aacaaatggg gaagtagaaa gaatgaataa      3720
     cacgattctt aagcgattga aaataagtca ggcggagaat ccagcaaagt ggaaatggga      3780
     tttacgaagt tttcttctta tgtataattc caccccacac tctacgacag gcgaagctcc      3840
     atcagcttta atgtttggta gaatacttcg ggataaaata ccaagcattc ttaattcaaa      3900
     taggccatgg gttgaagaca ttagggatcg agattgggaa cgaaaagtaa gtactgcaga      3960
     atcagctgac cacgacagaa acgcattacc aaatcaactt gaggaaggtg acatagttgt      4020
     ggcgaaaaga ataacaaagg agaacaaatt atctacaaac tacaacaagg agagattcaa      4080
     aaaagttaat agacatggat cggaagctga gatccgataa ctggacactg gtaaaatata      4140
     ccgccgaaat gtaacacatc ttaaaaagat acatgagcca acatctgaat caaatacgac      4200
     accaattgga agcccaacat ctacgatgac aatagaaaag gaacagtcaa tttcggaaga      4260
     tcctgctgaa gcacccatga acactcgtcg tagtactcga ccatcgaagc gcccagaaca      4320
     tctaagaaat tatgtacaag cattagtaaa ctaaaattat ttgtaaggga ggagtg          4376
//
ID   Gypsy-9_AA-LTR repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   18-JAN-2011 (Rel. 16.03, Created)
DT   18-JAN-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from the yellow fever mosquito genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_AA_;
KW   Gypsy-9_AA-I; Gypsy-9_AA-LTR.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-178
RA   Jurka J.;
RT   "LTR retrotransposons from the yellow fever mosquito genome.";
RL   Repbase Reports 11(3), 988-988 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 178 BP; 52 A; 31 C; 39 G; 56 T; 0 other;
     tggtatccta ctagtatcca agttagccat gatttatgtt aagaactaga ggaggcagtt        60
     agagtttggt gtgtgaaact aacaggtgaa tatatttatc gtgcgtgcta attgtgtgta       120
     caatctactg agcatccgaa tccgttttcc tgaatctccg gaaacaccag atattaca         178
//
ID   Gypsy-9_ACe-LTR repbase;    DNA;    INV; 2074 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 19.03, Created)
DT   04-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-9_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-2074
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 741-741 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to the consensus.
XX
SQ   Sequence 2074 BP; 556 A; 545 C; 355 G; 613 T; 5 other;
     tgttacgtcc agaggactcc acgattcttt tctttcgtgg gaaaattaca acgatccctt        60
     tttggcgtaa ttaggaaata agtaaatttt tattaaatac atagcaaacc aaatactgat       120
     aaaacaatta aaatttaatt tttctagcga caaatttaac cgatagggct cagagttagc       180
     caagtcacgg aggggcagaa ggtcaatcgt tgcccaataa atcttttaca ttaaagcttt       240
     gtttaccagt atttgacgtt gctcgcgcgc ttccggagtt agataagact aattataacc       300
     attcaccaat ccgattcctc caagtgtcca attcctagaa gacgctaggt caatgaccta       360
     ctgccaaaaa ctaggaaggg catatcgtcc ccgcgaatat aaatacgagg gctctttgag       420
     gcatgaggca ttcttccagt cattcattcm gtcagtcaca tgtcagttac aaagttagtt       480
     aaatagtcag tgtacaccac cggttccgct gaggtgcgtg aattgctcca catcataaca       540
     ctttatcaas ccggcttccc tcaatcgact gcgtcgaggg ctaccactac cgccgtcttt       600
     cagtcctttt acctgaggga ttcgccgcag catcctccgc tcaaccgcag agatagtaag       660
     taatcgatat cccaacacgt cggaaacaaa atttttttta atacggaaca tctcagaaat       720
     ttctgctttt ctcccccatc cacttcccga cccctcccat aacaccattg catatttgct       780
     cgaaccgatt aattatatta ttggaacgtt tcgagcaggt gatttcgttt cttctaatca       840
     cgcggcgcgc ttctctaatt cttgaagcgg taaagcgctt cgagtaatta catttcctct       900
     ctttccctat ttctcgaagc ggtaaagcgc ttcgagtgat tacacatctt ctcttcctct       960
     ctctctctct ctctctctct ctctctctct ctctttctct ctcttscttc ggattattta      1020
     gagcggtaaa acgctttgag taattccctc acatttctcg gtctctatta tcactagaac      1080
     agataaggcg cctctttcaa atcacctcaa ttatttattg gtgtttttcc tccctttccc      1140
     ctcttcttca cttatcccaa aatgcacata ttcttatcaa atttaaaagg ggaaatttct      1200
     aacgtagaat ggtgaaacgg aatcgccatc gtgcgggtcg caagaagcga gcgaagatcg      1260
     aagcgctcaa gaaaaggggg atcccgataa tagtaaagat ccaatcggga attttcctct      1320
     cggaagaggc ccgcgcccaa ttgaacggga ccataagact ccaatcgttg agcaggaggt      1380
     tccaccctca gcgatacccg tcgtggacct taccgaggac gatcctccct cccttccatc      1440
     cctagacctg gaatttcctt ctcccttctt actctcctac tttgatagac tctccacacc      1500
     ccgtaattcc ttctctctct tccgtccctt ccgaggacga tagatctctc gaagagattt      1560
     ttcaatctct tcaatcgctc gagtctgcga ggtcctccct cctttgacca catcatcacm      1620
     tgmatcccac ataaacagaa aacctaatta ttagtttaat cttagatttt tctattgtag      1680
     cgtatacaca cacatacaca tataaatata taaaaataaa caaatgtaac caattatttt      1740
     tgtaaaacca ataagacagt aattttcatt tatttcggcg ccccttccga ttcgttccac      1800
     tttcccaaag atcgtactgg ccttgtccct ggtcaaaaga attaagtttc ttgacttaaa      1860
     aagaagagcc gatggacgca ctgtcacagg ttggataata gcgtcacata tcggcgttga      1920
     cccacatcta tgacccatta aagtgcttcc gacttgtggc acgcaccgga gcgataacca      1980
     caagagtgga atctgttgcg ttcttcccta gccctcttca ttcctaattc cttctcccat      2040
     tcaagacaaa gaatcctggg gcttggacgt aaca                                  2074
//
ID   Gypsy-9_AnFu-I repbase;    DNA;    INV; 4498 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_AnFu-I.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-4498
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2895-2895 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4484
FT                 /product="Gypsy-9_AnFu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MLNPDDLNGEQQPSRSSHESHRQSSVPEPNTAWIQEM
FT                 FKQQQCILHQQQEAFLKQQESFLTQMMSSMNVRETNGPEFLIESLAKQVTE
FT                 FRYDPEENLTFGAWYRRFEGLFEKDAAKLPDDAKMRLLLRKLGVAEHERYN
FT                 SYILPQKACDFDFAETIVKLRALFGIKESDVRKRYKCFQLQKLPTEDHVTF
FT                 SCRINKATVDAELGGISEEAVKCLIFVCGLKDEEDADVRMKLLSRMEEKKD
FT                 ITLAQLTDLCENLVNLKKDTTFLAGESKVQMVGEEKCRSPKTKWQNSRKLY
FT                 PRVEKSRVACFLCGEGHWARKCTYKSHKCSKCFKFGHKEGFCNAASRWTSR
FT                 TKQTRNVRIVSVNAVKSGRGCVNVTINGTQVEMMLDTGADITIISRRLWHH
FT                 IGKPALTPSTIKARTASGDLLHIVGEFACSMIVGEQCKNCTIRVTTADLAL
FT                 FGKDSMDAFNLWNVPLTAVCNRVGLVEPCSAILQKEFPKLFSGKLGCCTKA
FT                 KIQLKLKEGATPVFRPKRPVAYAMFQAVDDELERLEKDGIISKVDYSEWAT
FT                 PIVVVRKANGKIRVCGDYSTGLNDMLQPHQYPLPLPQDIFASLATCTVFSQ
FT                 IDLSDAFLQVEVEESCRMLLSVTTHRGLYVYNRLPPGVKTAPGAFQQLMEI
FT                 MLAGLGGVAVYLDDIVVGGPNEEAHMRNLRAVLRRIEDYGFTIRLDKCSFQ
FT                 KKQIKHLGHLLDSKGLRPDPARIDAILNLQVPTDVTGVRSFLGAVNYYGKF
FT                 VRNISMLRHPLDSLLKEGATFTWTKQCQDAFEQFKAILSSDLLLTHYDPRQ
FT                 EIIVAADASSFALGATISHRFKGGAIKVVQHASRTLTKTEQKYSQPDREGL
FT                 AIIFAVTKFHKLIFGRHFRLQTDHKPLLRIFGSKTGIPVYTANRLQRYALT
FT                 LLLYDFELEYVPTDKFGNADVLSRLIAKHEKPEDDYVIASIEMEEDIRSVV
FT                 NSVSNALPLKFSDVEREMKKDAQLRKVYDFTRNGWPHAAVKDRSLSKFHSR
FT                 RDALSTFGECLLFGERLIIPSSQRCKCLQQLHLGHPGIERMKALARSYVFW
FT                 PGLDSDIESLVKSCKQCAMAAKSPAASVPISWPKTNAPWQRVHVDYAGPID
FT                 GDYFLLVIDSYSKWPEIISTRTISSTATIRILRNLFARFGMPTVIVSDNGT
FT                 QFTSADFAEFCNTNGIEHICTAPFHPQSNGQAERFVDTFKRALKKIKEGGS
FT                 TVTEAIDTFLLTYRSTPSKLLEYQSPAEVMFNRKIRTCLELLRPQPSLDPV
FT                 IEDVGTDPRRFKINDLVYAKQYRRNSWKWVPGVISGCIGRVMYEVMIEHGR
FT                 KLRSHVNQLRTRVDGNSASKVAAKLGSTSKRSLPLNLLLDAWNMVEEVHNP
FT                 VASPNTSQQPEVVDIAKDSMSSSFLSSSSAPSSSSSPSSSSSSSSSSSSLS
FT                 SPSSSSSPSTQLSPEACLSPTSPGFETADSGTPSPVQPLRRSSRVRRSPQW
FT                 MEAYKRF"
XX
SQ   Sequence 4498 BP; 1325 A; 893 C; 1140 G; 1140 T; 0 other;
     gtggcgacga ggagtagaac cagaaatcgg cattctgtta aaaaaaggac acctcattac        60
     gataaaagat gctgaaccca gatgacctta acggtgaaca gcagccatcg cgaagcagcc       120
     atgaaagcca ccggcaaagc agcgtcccag agccaaatac cgcatggata caggaaatgt       180
     ttaagcagca acagtgtatc ctacaccaac agcaggaagc ttttttgaag caacaagaga       240
     gtttcttaac gcaaatgatg tcatcgatga atgtgcgtga aacgaacgga ccggaatttt       300
     tgatcgagtc gttggcaaaa caggtgacgg aatttcggta cgatcctgag gaaaatctta       360
     cttttggtgc ttggtatagg cggttcgagg gactttttga aaaggatgct gcaaagctac       420
     cggatgatgc caagatgcga ttgttgttgc gtaaacttgg agtggcggag catgagcgat       480
     acaacagcta tatattgccg caaaaagcat gtgatttcga ctttgcggaa acaatagtga       540
     aactgcgggc actgtttggt ataaaggagt cggacgttag aaaaagatac aagtgctttc       600
     agctgcagaa actacctact gaagaccatg taacgttctc atgccggata aataaggcta       660
     ccgtagatgc ggaattgggc gggatcagcg aagaagcagt gaagtgtcta atttttgtgt       720
     gcggcctaaa agatgaagag gatgctgatg tacgcatgaa attgctgagc cgtatggaag       780
     aaaagaagga tatcactctg gcccaactaa cagatttgtg tgaaaatctg gtaaatctta       840
     aaaaagatac aaccttcctc gcaggagaga gcaaagtcca aatggttggc gaagaaaagt       900
     gtagaagccc gaaaacgaag tggcaaaata gtaggaagct atatccacgt gtggaaaaaa       960
     gcagagtggc atgttttttg tgtggagaag gccactgggc taggaagtgc acttataaga      1020
     gccataaatg cagcaagtgt tttaagtttg gacacaaaga agggttttgt aacgcggcgt      1080
     ctcggtggac aagcagaacg aaacaaactc gcaacgtaag aatcgtgtcg gtcaatgcag      1140
     ttaagagcgg acgtggatgc gtaaatgtta ccattaacgg aacacaggtg gaaatgatgc      1200
     ttgatacagg tgctgatata acgatcattt cacgtagact gtggcatcat attggtaaac      1260
     cagctctaac cccttcaacg ataaaagcga gaactgcatc aggtgatctt ttgcacatcg      1320
     taggcgagtt tgcctgttcc atgattgtag gagaacaatg caagaattgc acgatccgag      1380
     taacaacggc ggatttggcg ctttttggga aagattccat ggacgcgttt aatttgtgga      1440
     atgtgccgct gacagctgta tgtaatcgcg ttggtttggt tgaaccgtgc agtgcaatat      1500
     tgcagaagga gttcccgaag cttttttccg gcaagctagg ttgctgcact aaggcgaaaa      1560
     ttcagttgaa gctgaaagaa ggtgcaacgc ctgtttttcg tccaaagcgg cccgtggcct      1620
     acgcaatgtt tcaagccgtg gatgatgagc ttgaaaggct ggaaaaagat ggaataattt      1680
     ccaaggtgga ctattctgaa tgggcgacgc caattgttgt tgtgcgtaag gcaaatggga      1740
     agatacgagt ttgcggagat tactctacgg gtttaaatga tatgctgcaa cctcatcaat      1800
     acccgctccc tcttccgcag gatatattcg caagtctggc aacttgtacg gtgttcagtc      1860
     agattgattt gtctgatgcg tttcttcaag tagaagtcga agaatcttgc agaatgttac      1920
     tgagtgtgac tacgcatcga gggttgtacg tttacaacag attacctcca ggggtgaaaa      1980
     ctgcaccggg agcttttcag cagctgatgg agataatgct agcaggtctg ggtggcgttg      2040
     ctgtttattt ggacgacatt gtggttggag gaccaaatga agaagcccat atgagaaatc      2100
     ttcgagctgt gcttaggaga atagaagatt acggcttcac catacgattg gacaaatgct      2160
     cgttccagaa gaagcaaata aagcatttgg gccatttgtt agattcgaag ggacttcgac      2220
     cagaccctgc taggattgat gctatcctca acttgcaagt tccaactgat gttacaggag      2280
     tgagatcgtt ccttggagct gtgaattatt atggcaagtt tgtaagaaac attagcatgt      2340
     tacgccatcc gctggatagt cttcttaagg aaggagctac gtttacgtgg acaaagcagt      2400
     gccaggatgc ctttgaacag tttaaagcaa ttctttcttc agatttgcta ttgacgcact      2460
     atgacccgcg tcaggagatc atagttgcgg cggatgcctc atcctttgca ctaggggcga      2520
     ctattagcca cagattcaaa ggcggggcaa tcaaagttgt acagcatgca tcgcgtacgt      2580
     taaccaagac ggagcagaag tatagtcaac cggatcgaga gggtttagcc attatatttg      2640
     cagttaccaa attccacaaa ctgatattcg gaaggcactt tcggctacaa acggatcata      2700
     aaccgctttt acgaatattt ggttcgaaaa ctggtatacc ggtgtataca gccaatcggt      2760
     tgcagcgtta tgccttaacg ttgctgttat acgattttga attggaatac gtgcctacag      2820
     acaaatttgg taatgctgat gtactttcaa gactaatagc taaacacgaa aaacctgaag      2880
     atgactacgt gattgccagc attgaaatgg aagaagacat acgatctgtt gtgaacagtg      2940
     tgagcaatgc cctaccgctg aagttcagtg atgttgaacg tgaaatgaaa aaggatgcac      3000
     aattgcgaaa ggtgtatgat ttcaccagaa atggatggcc acatgcagcg gtaaaagaca      3060
     gaagtttgag taaatttcac agtaggcgtg atgccttatc tacatttggt gaatgcctcc      3120
     tttttgggga aaggttaata ataccatcgt cgcagcgatg taaatgctta cagcagctac      3180
     acctaggtca cccaggaata gaaagaatga aggcgctagc tcgtagctat gtattctggc      3240
     ctgggttgga ttcagatatt gagagcctag taaaatcgtg taagcaatgt gcaatggcag      3300
     ccaagtcacc tgcggccagt gtaccaatat cttggccgaa aacgaatgca ccgtggcagc      3360
     gagtgcatgt agactatgca ggtcctattg atggcgacta ttttctacta gtgattgatt      3420
     cttattctaa gtggccggaa atcatctcta ctagaacaat atcttcaaca gccaccattc      3480
     gcattcttcg caatttattt gcacgttttg gcatgccaac tgttattgtg agcgataatg      3540
     gaacacaatt taccagcgca gattttgcag agttctgcaa cacaaatggt atcgagcaca      3600
     tatgcacagc accgttccat ccgcagtcga acggacaagc ggaacggttc gttgacactt      3660
     ttaaaagagc gctaaagaag attaaggaag gaggaagcac cgtaacagag gcgatagaca      3720
     cgtttctatt aacatacagg agtacgccga gcaaactatt ggaataccaa tcacctgcag      3780
     aagtcatgtt caatcgtaag attcgaacat gtttggagct acttcgacca caaccaagtt      3840
     tagatcctgt tatagaagac gttgggaccg atccgagaag gtttaagatc aacgatttag      3900
     tctatgccaa acaatatcgt cggaatagtt ggaaatgggt cccaggtgtg ataagcggat      3960
     gcatcggtag agtgatgtat gaagtaatga tagagcatgg caggaagtta cgttcacacg      4020
     ttaaccagtt gcggacacga gttgatggaa acagcgccag taaagttgca gctaaactgg      4080
     gttctacttc gaagaggtcg ctgcctttaa atctattgtt agatgcatgg aacatggttg      4140
     aggaagtcca taatccagtc gctagtccaa atactagtca acaacccgaa gtggtagata      4200
     ttgccaaaga tagtatgtct tcatcgtttt tgtcttcatc gtctgcaccg agttcttcgt      4260
     catcgccttc ttcgtcatcg tcttcatcgt catcgtcatc gtccttatcg tcaccgtcct      4320
     catcgtcttc gccgtccaca cagctgtctc cagaagcatg tttgtcaccg acctcgccag      4380
     ggtttgaaac agctgacagt ggaacgcctt cgcctgtaca acctctacgt cgatcttcgc      4440
     gggttcgaag atcgcctcag tggatggaag cgtacaagcg attttaaaga aggaggga        4498
//
ID   Gypsy-9_AnFu-LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   12-APR-2021 (Rel. 26.06, Created)
DT   12-APR-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles funestus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_AnFu-LTR.
XX
OS   Anopheles funestus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles; funestus group;
OC   funestus subgroup.
XX
RN   [1]
RP   1-224
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles funestus genome.";
RL   Repbase Reports 21(6), 2961-2961 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 224 BP; 54 A; 47 C; 52 G; 71 T; 0 other;
     tgttgggtgc ctgtgtctac cgcgcttgat gtgccactca caagtgacat tcgatggtca        60
     cttggtgacg tgagtaccca gacacagcat ccagccgatg agtgtgccct cttctcctgc       120
     gaccgttgcc gaggacggta tcgtttttag caaaatcaga ttttatgtat atttatattg       180
     tacacttttg tttttagaat aaagtgtgtt agaagaacac aata                        224
//
ID   Gypsy-9_AnMe-I repbase;    DNA;    INV; 4894 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_AnMe-I.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4894
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6821-6821 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           852..4877
FT                 /product="Gypsy-9_AnMe-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAEERVLILIQDYTRTGLMRLCELKGIPATGTKEEMA
FT                 MQLVEHEQQTSSSGSADMEQFHDVDAESIQDAGQASGVNEMDSSVRTLMHP
FT                 YSFRDVEESIPTYGSDKTIDFCVWMDEFEAVARMAKWSDDQKFIMCRKKMT
FT                 GSARNFLLTICNITSFSALKKALLVEFGKRARPSDVHRQLATCRRAKDETA
FT                 LDFIYRMQRIAKQIDLDEESICEYIIDGITDDETQRAALYEVRTISALKVK
FT                 IELRERAIQKGATRKTFNASQNTVAKQKTMSTKVRCYNCGETGHRSSECVR
FT                 KNSGPKCFKCGEFGHVSSKCTTKDDRATNQQNVLLVKKLPSIPVRIASEKY
FT                 DAAVDTGSEVTLLRSDVHKLIPKNLQKWSPTTQRLCGLGGKVTNTSGEAIV
FT                 FATVGEAECEVRFDIVPDAALEVPMLLGMNFLRSVDFVINNTGVTIQRKKV
FT                 DKSETSGTGNGENVEENTSWIFQISCERDELDVPCEWRQEVTNIVNNYVPV
FT                 EKVNSNCELNIVVQDNSVVRMNPRRLAPLERKVVREQIEQWLRDDIIRPSE
FT                 SAYASAVVVVPKKDGSHRVCIDYREINKRIVRDPYPMPNIEDQIDQLADAR
FT                 VYTTLDLKNSYFHVPVKEECRKYTAFVTPEGQYEFMRAPFGLCTSGSAFGR
FT                 FISSVFRNLINEGVMLAFVDDVIIPSRDEEQGLAAIRRVLDVAQSAGLKFN
FT                 WKKCVFLQRRVEYLGYQIYEGRIEPSSQKVEKVRSFPVPTNVKQLQRFYGL
FT                 ANYFRKFIPDFANMMRPLSMLLKKEVEFIFERSAMESFERVKRILTEYPVL
FT                 HIFKLGRKTEVHTDASKDALAGILMQYDEEGKCHPCYFYSRLTNAAEKNYH
FT                 SFELEGLAVVESLKKFRCYLLGQKFSVITDCVAFKQALNKNVVNARVSRWL
FT                 VVLAEFDFDIEHRPAERMQHVDALSRVSVLKISVLICKKMIKAQKEDEKCC
FT                 EIVHTIEHGGNCGNFVFANGLLYKETGGHKRIYVPRSMEVEIVRRAHVQGH
FT                 FGVKKTMERLKEEYYIPNVEEKINDCINNCVECILSEKKRGKAEGHLQPIP
FT                 KGDVPLDTFHMDHLGPMPSTRKSYNYILTIIDAFTKFVWMFPTKTTSAQEV
FT                 LKKLEVVATMFGDPRRIISDRGAAFTSGAFQKYCEDRGIETHTIATGIPRG
FT                 NGQVERIHRVIIPVLTKLSIKNPEEWHKYVTNVQKVLNNSWQRAIQTTPFE
FT                 LLLGVKMRTKESVGLTTLLAEELRNNFQETRNEWRKCARDGIQKIQEENRK
FT                 YYNLRRRPARIYQVGDIVALPVTQFVTGKKVKQRFYGPYEITKKMPYGRYE
FT                 MRKLDDSDEGPRVTTSAADALKPWEHSGRM"
XX
SQ   Sequence 4894 BP; 1531 A; 790 C; 1322 G; 1251 T; 0 other;
     tgggggctcg tccgggaagg attcaataat tcgagaaaag actgcgaaac cgcgattgtg        60
     aaaaagacga aaacgattgt gcgtaaagac gacgcgcatc gtggaataag tgtatgtgcg       120
     tatgacgacg tgcttacacg gtagaggaaa acgcgcatga cggcgtgttt gtatgtgtgc       180
     ataagaacat aagacgacgt tctttgtacc ggtagttggg agtgcgtatg acgacgcgca       240
     ttctaaagac gataacgcgt aagacgaagt gtttgtgtat gtgctcaaaa cgtgcatgac       300
     gatgtgtttg tatgtgtgct aaagtgcgta ggacgacgtg cttggtactg tgttgcgtat       360
     gacgacgcgc attctaaaga cgatagcgcg taagaggaag cgtttgtgaa tatgttcaaa       420
     acgcgcatga cggcgtgttt gtatgtgtgc taaagtgcgt aggacgacgt gcttggtacc       480
     ggttgtgtat gacgacgtgc gtcttaagaa acgagaacgc gtatgacgac gtgtttgtgt       540
     gtatgcatgt gcaaaacgcg catgatggtg tttgcgtgcg ggcataagaa aggcgcttaa       600
     ctaagacgct ttgtgtcaat tatctgatga cgtgtttgtg cgatacgtgt atgaacgtca       660
     ttgtgtgaga tcagaggcgc tctcgtgtat gtgtttgtgc gtatgagagg agtgcatttg       720
     acggcgcgct cgtagtagca caaaagaacg caggtggcgt gattgtgaat aaaaaaaagc       780
     gttccgaaaa gacggcgcgc gtgttgagca aataagttcg gtgtgcgtga agtaaaggtg       840
     aagtaagcga aatggcggaa gaaagagtgt tgattctcat acaagactat acgcgcacgg       900
     gacttatgcg gttatgtgag ttgaaaggta tacctgcaac gggaaccaag gaagagatgg       960
     cgatgcaatt ggtggaacat gaacagcaaa catcaagcag tggatcggct gacatggagc      1020
     aatttcatga tgttgatgca gaatcaattc aagatgcggg acaggcatca ggtgtaaatg      1080
     aaatggattc gtcggtaaga acgttaatgc atccttattc atttagagat gtagaggaaa      1140
     gtattcctac gtacggttcc gataagacga tcgatttctg tgtgtggatg gatgaatttg      1200
     aagcggttgc gcgaatggca aaatggtccg atgaccaaaa attcatcatg tgtcgcaaga      1260
     aaatgaccgg cagtgcgcgg aatttcttac ttacgatttg caacataacg tcattttcgg      1320
     cattgaaaaa agcacttttg gtcgagtttg ggaaaagagc gcgtccctcc gatgttcatc      1380
     gccagctagc aacatgtcga cgtgcaaagg acgagacggc gcttgatttt atctatagaa      1440
     tgcaacgcat tgctaaacag atagatttgg acgaggagag catatgtgag tacatcatag      1500
     atggaatcac ggatgacgaa acgcagagag ctgctttata tgaagtgcgt acgatcagtg      1560
     cattaaaagt aaaaattgaa cttcgagagc gtgctattca gaaaggagcg acccgaaaaa      1620
     cattcaatgc ttcgcagaat accgtcgcca aacaaaagac gatgagcaca aaagttcgtt      1680
     gttacaattg tggtgaaacc ggtcatcgta gttctgagtg tgtgcgtaag aacagcggac      1740
     cgaaatgttt caagtgtggt gagtttggac atgtgtcgtc gaaatgcaca acaaaagatg      1800
     atcgagcgac caaccaacaa aacgtgttac tggtgaaaaa gcttccaagt attccagtaa      1860
     gaatagcgag cgaaaaatac gatgcggctg tcgacacagg tagtgaagtg acattgttac      1920
     gatcagacgt gcataagctg attccaaaaa atctgcagaa gtggagccca acgacacaaa      1980
     ggctttgcgg tctgggtggc aaagtaacaa acacttcagg agaagctatt gtctttgcaa      2040
     ctgtcggcga agcagaatgt gaggtaagat ttgacattgt tcctgatgcg gcacttgagg      2100
     taccgatgtt attaggaatg aatttcctta gaagtgttga ttttgtgatt aacaatacgg      2160
     gcgtaacgat acagcgtaaa aaagtggata aaagcgagac cagtggtaca ggcaatggtg      2220
     aaaacgtgga agagaataca tcgtggattt ttcaaatttc atgtgaacgt gatgagttgg      2280
     atgttccatg tgagtggcga caagaggtaa cgaatatagt gaacaattat gtacccgttg      2340
     aaaaagtgaa ttccaattgt gagctaaata ttgtggtgca ggacaatagt gttgttcgga      2400
     tgaatccgcg taggttggct ccgttggaaa gaaaggttgt tcgggagcag atcgaacaat      2460
     ggttgcgtga cgatattatt cggccttcag aaagtgcata cgcgagtgca gtggtagtgg      2520
     ttccgaaaaa agacggttct catcgggtgt gcatcgacta tcgtgagata aacaagagaa      2580
     tcgttcgtga tccctatcct atgccgaata tagaggatca aattgatcag cttgctgatg      2640
     ctagagtgta caccacttta gatttgaaga actcatactt ccacgtaccg gtaaaggaag      2700
     aatgtagaaa gtacacagcc tttgtaacac cagaagggca gtacgagttt atgcgtgcac      2760
     cgtttgggct ttgtacgagt ggtagtgcgt tcgggagatt tatcagttca gtgttccgta      2820
     acttgataaa tgaaggagta atgttggcgt tcgtcgatga tgtcatcatc ccatcgcgag      2880
     acgaggagca ggggctagca gcgatcaggc gtgtgctgga tgtagcgcaa agcgcgggcc      2940
     tgaaattcaa ttggaagaaa tgcgtattcc tgcaacgacg tgtcgagtat ctgggatacc      3000
     aaatctacga agggcgaatc gaaccatcgt cgcagaaagt ggaaaaggta agaagttttc      3060
     ccgtaccgac gaatgtgaaa cagcttcagc gtttttacgg tttagccaat tacttccgga      3120
     aatttattcc tgattttgcg aatatgatga ggccattatc gatgttgtta aaaaaggaag      3180
     ttgaatttat tttcgaacgt agtgcaatgg aatcatttga gagagtgaag cgaatactaa      3240
     cggaatatcc agttttgcac atttttaaat taggtcgtaa aacagaagtg catacggatg      3300
     caagcaaaga cgccttggca gggattttga tgcagtatga tgaagaaggg aagtgtcatc      3360
     catgttattt ttatagccgg ttgacaaacg cagcggaaaa gaattatcat tcttttgaat      3420
     tagaaggatt agcagtggtt gaatctctca aaaagtttag atgctacttg ttaggtcaaa      3480
     agtttagtgt cattacggat tgcgtggcat tcaagcaagc actaaacaag aatgtagtca      3540
     atgcaagagt tagtagatgg cttgtcgtat tagccgagtt tgattttgat attgaacatc      3600
     gacccgctga gagaatgcaa catgtagatg cattatcacg agtaagtgtg ttaaagatat      3660
     cggtattgat ttgtaagaag atgattaagg ctcaaaaaga agacgaaaaa tgttgtgaaa      3720
     tagtacacac tatagagcat ggaggaaact gtggtaattt cgtatttgct aatggattac      3780
     tttataaaga aacaggcgga cacaaaagaa tttacgtacc acgttccatg gaagtagaaa      3840
     tagttaggcg agcgcatgta caaggacatt ttggagtgaa gaaaactatg gagaggttaa      3900
     aggaagaata ttacattccg aatgttgaag aaaagattaa tgactgtatt aacaattgtg      3960
     ttgagtgcat tttgagtgag aagaagcgag gaaaggcgga aggtcatttg cagccaattc      4020
     ctaagggcga tgtaccgtta gatacttttc atatggatca tttgggaccc atgccttcga      4080
     ctcgaaaatc ttataattat attttgacta ttattgatgc attcaccaag tttgtctgga      4140
     tgtttccgac aaagacgaca tcagcgcagg aagttttgaa gaaattggaa gtagtggcta      4200
     ctatgttcgg agatcctagg cgcataattt ctgaccgtgg agcagcgttc acgtcaggag      4260
     cttttcaaaa atattgtgaa gatcgtggaa tagagacaca tacgatagcg acagggattc      4320
     ctagaggtaa tggtcaagtc gaacgaattc atcgtgtgat cataccggta ctgacgaaac      4380
     tttctattaa gaatccagaa gaatggcaca aatatgtcac taacgttcag aaagtattga      4440
     ataatagttg gcaaagagcg atacaaacaa caccgtttga attactatta ggagtgaaaa      4500
     tgaggactaa agaaagtgta ggattaacta ctctattggc agaggagctg cgaaataatt      4560
     ttcaagagac tcgtaatgaa tggcgaaaat gtgcaaggga tggaattcag aagatacagg      4620
     aagagaacag gaagtattac aatcttcgca gaagaccagc acgaatctat caagtgggtg      4680
     atattgtagc tctgccggta acacaatttg tcacaggaaa gaaggttaag caaaggtttt      4740
     atggtcctta tgaaataact aagaaaatgc catatgggcg atatgagatg agaaaattag      4800
     atgatagtga tgaaggtcct agagtgacca ctagtgctgc ggatgcgttg aagccatggg      4860
     aacattcggg acgaatgtag gtcaggaaag gccg                                  4894
//
ID   Gypsy-9_AnMe-LTR repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   05-OCT-2021 (Rel. 26.12, Created)
DT   05-OCT-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles merus genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_AnMe-LTR.
XX
OS   Anopheles merus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-155
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles merus genome.";
RL   Repbase Reports 21(12), 6812-6812 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 155 BP; 50 A; 26 C; 40 G; 39 T; 0 other;
     tgtgggaatg ggttcgacaa ccctggtata atttgtcgat tgggaacgaa atgaaattta        60
     cttcgagtgt aaaagtgtga ggggtagcag tagcaatcgg gaagtcgaag cgaacagtca       120
     ataaacgaac ttcatgaacc tatacccttt ctaca                                  155
//
ID   Gypsy-9_AnSt-I repbase;    DNA;    INV; 4464 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_AnSt-I.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4464
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 783-783 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4451
FT                 /product="Gypsy-9_AnSt-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MENGRPSRDGHVEQQQESLNANWIQEIFRQQQDSLHQ
FT                 QQQAFLQQQEQLMTKVFATLKSPQPTGSESVIEALAKDVQEFRYNPDDRVF
FT                 FAGWFTRFGSLFVDDARELDDAMRVRLLLRKLGMVEHERYVSHILPSKPGD
FT                 FDFNTTVTKLKKLFGSPCSEMERRFKCINMAKTKQEDFVAYSCRVNKAVVE
FT                 SELSVLSEEELKCLIFVCGLKDESYADVRTRLLSRLGDKRVATLDEMTEEC
FT                 KRLATLRHDDAMINADKTVSAIRGQQSYRPYSKTPNNTKHESKAESSIKCW
FT                 LCGEGHHARRCPYKSHQCRKCRRYGHMDGFCNSALRWSNGGRQKSIRTVWI
FT                 NRISNFKRGLVNVILNEMPTRMMIDSGADITLISKKHWLEMGKPAMTQPDI
FT                 KAKTASGEPLHILGEFQCMMSIGQQCKPCMVRVVNADLLLLGADAMEIFGL
FT                 WDVPLSSICRRVHVGDVSCGTLSTSYPELFADRLGRCTKTQVKLQLKDDAS
FT                 PVFRPKRPVAYAMLQPVTDELQRLEEEGVITHVEYSEWAAPIVVVRKANGS
FT                 IRICGDYSTGLNNALMTHQYPLPLPEDIFASLSNCAVFSQLDLSDAFLQVE
FT                 VDEKCRDFLTVNTHRGLFRYNRLPPGVKAAPGAFQQLMDTMVASLAGVAVY
FT                 LDDIVVGGKDMAEHDRNLHAVLEKLQEYGFTLRAEKCSFRKPQIKYLGHLL
FT                 DAKGLRPDPDKITAIIKLQPPTDVPGMRAFLGAINYYGKFVHNMRMLRQPL
FT                 DELLKEEGLFKWTPQCQHAFEQFKKILASDLLLTHYNPLLEIVVSADASSV
FT                 GIGATISHRWPDGRMKVVQHASRALTATEQRYSQPDREGLAIIFAVTKFHR
FT                 MLFGRHFLLQTDHQPLLRIFGSKKGIPTYTANRLQRFALTLLLYDFHIEYV
FT                 QTDKFGNADVLSRLMDRHEKPEEDLVIASIELENDIGALVKNAARILPLAF
FT                 EDIVRESRKDPVLRVLLKYIQNGWPKRLEGRELKIFHARRDSLSAIEDCII
FT                 FGDRLIIPLSQRQHVLELMHRGHPGIERMKGIARSYVYWPNIDADIEDMVK
FT                 CCKSCASAAKSPNLSSPVPWQTTDAPWQRVHIDYAGPIEDMYFLLVIDSHS
FT                 KWPEIVPTSQISATSTVAILRRLCARLGMPNTIVSDNGRQFTSIAFADFCN
FT                 TNGIEHIRTAPYHPQSNGQAERFVDSFKRALKKIKVGEVSLQEALDMFLLT
FT                 YRSTPNKQLEGMKTPAEVMFGRKIRTCLELLRPPVKVSPYQDDGQFSTRSF
FT                 NIGESVYAKKYHYNTWSWVPAIIDKRIGKVMYQVVNSAGKCWRSHINQLRP
FT                 RLNNKTDFKAQDLQPYAKQTSIALDILLDECQSDADTQSPASLSSSSSSSS
FT                 SSPASSSSSPASSSSSSSSPASSSSSSSSSLLPSSGSLLCTSPLSEMGTET
FT                 IASPGFETADSGSPSPVQPLRRSSRARRQPQWMESYQRD"
XX
SQ   Sequence 4464 BP; 1251 A; 921 C; 1135 G; 1157 T; 0 other;
     gtggcgacga ggacaaagga aacacgggaa caacgtattg tgctggaaag ccgtgttaat        60
     tcatatctac gtgcggtgct gcattgtgct aaatggagaa cggccggcca tcgcgcgacg       120
     gccatgttga gcagcagcaa gaaagcctta atgccaactg gatacaggaa atatttcggc       180
     aacagcaaga ttctctacac cagcaacagc aggcgttttt acaacagcaa gagcagctca       240
     tgacaaaagt tttcgcaact ttaaagtctc cgcaaccgac aggatcagag agtgtaatcg       300
     aagcgttagc gaaggacgtg caagagttcc gttacaatcc ggatgatcgc gtattttttg       360
     ccggatggtt tacacgcttc ggaagtttgt ttgtggatga tgcgagagag ctggatgatg       420
     ccatgcgtgt aagattgttg ctgcgaaagc ttgggatggt agagcacgag cgatacgttt       480
     cacacatact accgtccaag ccgggtgatt ttgatttcaa cacaactgta acaaagctaa       540
     agaagctgtt tggctcaccg tgctccgaga tggaaaggcg ttttaagtgc ataaatatgg       600
     cgaaaacgaa acaagaagat tttgtggcat actcgtgtcg tgtgaataag gcagtggttg       660
     aatctgagct aagcgtttta tctgaagagg agcttaaatg tttaatattt gtgtgtggtc       720
     tcaaggatga aagttatgcc gatgtacgta cacgtttgtt gagtcgttta ggagacaaac       780
     gtgtggctac ccttgatgaa atgacagaag aatgcaaacg tttagccact ttgagacatg       840
     atgatgctat gataaacgcc gataaaacag tcagtgcaat acgaggtcag caaagctata       900
     gaccatattc caaaacacca aataacacta agcatgagag caaggccgag tcctcgatta       960
     agtgttggtt gtgcggtgaa gggcatcatg ccaggagatg tccatataaa agtcaccaat      1020
     gtcgtaaatg ccgtcggtac gggcacatgg acggattttg taactccgct ttaagatggt      1080
     ccaacggtgg gaggcagaag agcataagaa ctgtttggat aaacagaatt tcgaatttta      1140
     aacgtggact ggtgaatgtt attttaaatg agatgccaac tcggatgatg atcgattctg      1200
     gtgccgacat aaccctaata tctaaaaagc attggttgga aatgggtaaa ccggcgatga      1260
     cacaacctga cattaaagcc aaaacagcat ccggagagcc tttgcacatt ttgggcgagt      1320
     tccagtgtat gatgagcata gggcagcagt gtaagccgtg tatggtacgt gttgtgaacg      1380
     ctgatttact gctgttaggt gcggatgcta tggagatttt tggtttgtgg gatgttccgt      1440
     tatcatcaat ttgccggcga gtccatgtcg gcgatgtgag ctgtgggact cttagtacgt      1500
     catatccgga gttatttgct gataggctcg ggcgttgtac aaagacacag gttaaacttc      1560
     aattgaagga tgatgcttcc cctgtgttcc gccccaagcg acctgttgcg tacgctatgt      1620
     tacagccagt gactgatgag cttcagcggt tagaggaaga aggggtaatc acacatgtgg      1680
     agtattcgga gtgggccgct ccaatagtgg tggtgcgcaa ggcaaacggt agtataagga      1740
     tctgtggtga ctattccaca ggccttaata atgcgctaat gacacaccag tacccgttac      1800
     ctctgccaga agatattttc gcaagcttga gcaactgtgc agtattcagc caattagacc      1860
     tctctgacgc atttctgcaa gtggaggtag atgaaaaatg tcgagatttc ttaacagtaa      1920
     acacgcatcg tgggttattc agatacaacc gattgccacc aggtgttaaa gctgcgccgg      1980
     gagcgttcca gcaattaatg gatacaatgg tggccagttt ggctggagta gctgtgtatc      2040
     tggatgatat tgttgtagga ggaaaagata tggcagagca cgatcgtaat cttcatgccg      2100
     tgttagagaa actacaagag tacggtttta ctttacgtgc agagaaatgc agttttcgga      2160
     agccccaaat taaatatttg ggccatttgt tggatgcaaa agggttgcgg ccagaccctg      2220
     ataagattac tgccatcatt aagctccagc ctccgactga cgtcccggga atgcgagcgt      2280
     ttctcggggc gatcaactat tatggaaaat ttgtccacaa catgcgtatg ttacggcagc      2340
     ctctggacga gctgctgaag gaagagggat tatttaaatg gacaccgcaa tgtcagcatg      2400
     cttttgagca gtttaagaag attttggctt cggacctttt gctgactcat tataacccac      2460
     tgctcgaaat cgtagtctca gcggatgctt cttcggtagg cattggggct acaatatcac      2520
     acaggtggcc tgacggaaga atgaaagtgg tccagcatgc atcgagagcg ctcacagcaa      2580
     cggaacaacg gtacagtcag cctgatcgtg aaggcttggc catcattttc gccgtcacga      2640
     agtttcatcg aatgctgttt gggcgacatt tcctgttaca aactgaccat cagccattac      2700
     taagaatatt tggatctaaa aaggggatac caacatacac cgcaaatcgg ttgcagcgtt      2760
     tcgctctgac gctgttactt tacgattttc atatcgagta tgttcaaact gataaatttg      2820
     gaaatgctga tgtgctctct cgtctaatgg atcgacacga aaaacctgaa gaggaccttg      2880
     taattgccag catcgagctt gagaacgaca taggagcttt agtaaagaat gcagcgagga      2940
     tattgccgct agcttttgaa gacattgtgc gcgagtcgcg caaagaccct gtgcttcggg      3000
     tgttgttaaa gtacatccag aatggatggc caaagaggct agaaggccgt gagctaaaaa      3060
     tttttcacgc gcgacgtgac tctttgtcgg caattgagga ttgcattatt tttggagacc      3120
     ggttaatcat acctttgtcg cagcgccagc atgtacttga gttgatgcac cgaggacatc      3180
     cggggattga gcgcatgaaa ggaatagcac gaagttatgt atattggcca aacatagatg      3240
     cagatattga ggatatggtg aaatgctgta aatcgtgcgc ttctgcggct aagtctccta      3300
     atctaagctc accggtacct tggcaaacaa cggatgcacc ttggcagagg gtacatatag      3360
     attacgctgg gccaattgaa gacatgtatt tcctgttagt gattgattca cattccaaat      3420
     ggccagagat tgtacccacc tcacaaatat ctgctacttc aactgttgct attttgagac      3480
     gattgtgtgc aagactggga atgccaaata caatcgtaag cgataacgga aggcagttca      3540
     cgagcatagc atttgctgat ttttgtaaca ccaatggcat tgaacacatc agaactgccc      3600
     cgtaccaccc gcagtccaac ggccaagctg aacggttcgt ggactcgttc aaaagagcgt      3660
     taaaaaagat taaggtggga gaggtgtcgt tgcaggaagc attggacatg tttcttttaa      3720
     catatagaag tacacctaat aagcagttgg aaggcatgaa aacaccggca gaagttatgt      3780
     ttggtcgcaa gattcgtact tgcctagagc tgctgcgccc acctgtaaaa gtttcacctt      3840
     atcaagatga cggacagttt tcaaccagaa gttttaacat tggtgaatct gtgtatgcga      3900
     agaaatatca ttacaacacc tggagttggg tgccagctat tattgataag cgaattggaa      3960
     aagtgatgta ccaagtggtg aattctgctg gtaaatgttg gcggtcacac atcaaccagt      4020
     tacggccgcg attgaacaac aagactgatt ttaaggcaca ggatttacag ccgtatgcta      4080
     agcagacttc gattgcctta gacattttac tggatgaatg tcaatctgat gcagatacac      4140
     aatcgccagc ttcattatca tcatcatcat catcatcatc gtcatctcca gcttcatcat      4200
     cgtcatcgcc agcttcatca tcgtcatcat cgtcatcgcc agcttcatca tcgtcatcat      4260
     cgtcatcgtc attgttaccg tcgtccggct cattgttatg cacttctcca ttgtcagaga      4320
     tgggtacgga aacgattgca tcccctggtt ttgaaacagc agatagcgga tcaccttcgc      4380
     cggtacagcc tctacgccga tcttcgcgag ctcgaagaca accgcagtgg atggagtcgt      4440
     accagcgtga ttaaagaggg ggga                                             4464
//
ID   Gypsy-9_AnSt-LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   21-DEC-2020 (Rel. 26.02, Created)
DT   21-DEC-2020 (Rel. 26.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Anopheles stephensi genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_AnSt-LTR.
XX
OS   Anopheles stephensi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-229
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the Anopheles stephensi genome.";
RL   Repbase Reports 21(2), 805-805 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 229 BP; 60 A; 49 C; 49 G; 71 T; 0 other;
     tgttgggaac accctgtgtc gcgattgccg atcggttgac ggataaaccg atcactcctg        60
     atgatacgcg ctatcagcga gagagtgacg agtttcggtc tcttcgctcc cgaccggccc       120
     gtacgacgga cgtatttcaa tcccgtttgt tattggtttt taagtgtact aatttatgta       180
     ttatattaca ttgtagataa taaatccata ccattttaaa agtacaaaa                   229
//
ID   Gypsy-9_BrCo-I repbase;    DNA;    INV; 5090 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_BrCo-I.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-5090
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1409-1409 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..5026
FT                 /product="Gypsy-9_BrCo-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MAIQMTQEQFAHMIQAIAQARTEGSLADCSLKYDGTR
FT                 DWTIVENFINSVTTYINSKHIQEQNAIRDFGLLLSGNALNWWNGIKTSIRS
FT                 FDNITTTLRDAFQPPQPNWFLINDIGNDRQADKETTDTYVTRQMARINRLT
FT                 NFPLNDNQKIDLLYGHLRLKIKKTVDRNSVSTITALLEKARVTEQHEQETE
FT                 ASKPAKKTCSFCHNYNHTESECRKKLRAQTKPAGEKPQNNGNSQLKPATPQ
FT                 GNSFSCYGCGAPNTVRSKCTTCKKVAKPLPENKEFCSLYQEVGTDLPNVTC
FT                 NISNRLTTTYLDTCARASIASRELYLHLLNTDHPFEEVMINMKLADGSQTY
FT                 KLVMRTSTTIVIGLRKFPIQFIAIPDATANKTLIGADFIKSTGLIINLSQD
FT                 AWCFSDDLTKWHLFDYTQSLPNELTHTLDEEIDPIHSMPPPAETTVKLSRR
FT                 QRKRARKTKNYNIAPLVDYSQDMSSAPLDSAIKPLPATPYIPCSPVSLSTR
FT                 PPQEILEETEIPTISDPIMEEINLMGQQLSINEILKKFTSPSYLPAMISPI
FT                 NSTPEAARKMEETQHEIQYYEPPTRNTSVQDIPLLMIDLNLRAEEAPNLKN
FT                 QQKHSLNDLINQHKDIFNEAGPATTKIEHRIDTLNHLPVASAPYRLPAAKR
FT                 EALKVEIQKMLDDDIIEESDSPWASNVVMKLKPNGKWRICIDYKRLNEVTI
FT                 SDKYPLPVIDDLLQDARGTLFMSTIDLHSGFWQIAIREEDREKTAFVTPFG
FT                 MYQFKRMAFGLKNASATFQRLANSFRNSLPNMKILTYLDDIILISTTFNNH
FT                 LQELDKLFKQLRQFGLRANREKCHFACSEVKYLGHIITQQGIKANPGKIEA
FT                 IRCRKPPQDLKQLLSFIQTCSWYRRFIKNFAEIIRPLTKLTKKNVKWEWTQ
FT                 MEQNAFDQLKLALCSAPVLQQIDPDKPFIIKTDASAYAIGAVLVQGETEDE
FT                 HPIEYASRLLTNAERNYSTIEREALAVVWAMEKFRGYIEGGVTLISDHQPL
FT                 KWLMSIKSPSGRLARWALRLQAYDFKILYQPGRTNVVADCLSRPPCPDESE
FT                 RHNEAQDCTICMLQIDIPSRGANDIREQQLKDEELAKIINIFENDSKHEEF
FT                 TRYTTRGYFMNQGVLYRYNQSADEDSEDALLVVPLHEVQRILTEYHDAPTA
FT                 GHYGVQRTLARISARYTWTGMRKQIATYVDKCKECQKYKAQNLKPAGLIQS
FT                 TASHQRFETLAMDLFGPLPTSTDGFKHILVVEDLATRWVELFKLKEATAEA
FT                 CAEIVLNEIFMRFGLPRRIVSDNASQFVSSVMQKLTFCLDIEHILLPVYHP
FT                 QANPVERKNRDLKHQLAIQVGTNQSNWSTQLAAIRFAMNTARNASTGYTPA
FT                 YLTFGRNLRTKEDLRNDIRQIVISENFVPEITPRLLQLTETFRQVKENVEK
FT                 MQNQNQTQSDIHRRPDPGYQPGDRVLIKTHLQSNKDKNFSAKLAPKRDGPY
FT                 VILQKIGAATYEIASTQDPDKPIGTYHTSDITLFKEEEGKQSATEEPSYPL
FT                 RKRGRPRKQQ"
XX
SQ   Sequence 5090 BP; 1822 A; 1147 C; 955 G; 1166 T; 0 other;
     ttggcgccca actagtggat taaccatcga ccaagtgacg tcaacaatac gtgacgtcat        60
     caaacattta catcatatcc gactacggac tacccgcaaa atcaaatttc ggctacggta       120
     tacccacacg acaagaattt gaattttggc ttctgtatat acgtacaatg aaataacgtt       180
     tcggctactg ggtcaactac agactacccg cacgattcaa tttcaaattt cggctacggt       240
     atacccacac gacaagaatt tggattctgg ctatacgaaa atcacctttc ggctactggt       300
     tcgaactacg gattacccgc acgacatcaa tctggattcg gaatacctac acgatctaag       360
     tttggtgaca gaatatccag actcggcaga agattaccaa atcgacacaa ccacatctca       420
     aggtttaccg gatcatcagc aacaagtgat ggccatacaa atgacacaag agcaatttgc       480
     tcacatgata caagcaatcg cacaggctcg tactgaaggc agtttggcag attgttctct       540
     gaagtatgat ggaactcgag attggaccat cgtagaaaac ttcattaaca gtgtgactac       600
     gtacatcaat tcaaaacata tccaagagca aaatgccata cgagactttg gactactgct       660
     atctggcaac gccttgaact ggtggaacgg aataaaaact tcaattcgat ctttcgataa       720
     tatcacgaca acgcttcgtg atgcatttca gccacctcaa ccaaattggt ttctgatcaa       780
     tgacattggt aatgatagac aagctgacaa ggaaacgacc gacacttatg tgactaggca       840
     aatggcccgg ataaatcgtt taaccaattt tcctctgaat gacaatcaga aaattgatct       900
     actctacgga catttacgct tgaaaatcaa gaaaactgtc gatcgaaact cagtctcaac       960
     cattacagct ttactagaga aagcgcgcgt tacggaacaa catgaacaag aaacggaagc      1020
     gtcaaaacca gcaaagaaaa cttgttcatt ctgtcacaat tataatcata cggaatccga      1080
     atgcagaaag aagttacgtg ctcaaaccaa accggcgggt gaaaaaccac aaaacaacgg      1140
     aaattcacaa ttgaaaccag caactcctca aggaaattca ttttcctgtt atggctgtgg      1200
     agcaccaaat acggtaagga gcaaatgtac tacttgcaag aaggtcgcga aaccacttcc      1260
     tgaaaataag gaattttgtt cgctatacca agaagtcggc accgatctgc ctaacgtgac      1320
     ttgcaatatc agcaataggt tgacaacaac atatctggac acttgtgcta gagctagcat      1380
     agcaagtcgt gaactatact tgcatttact gaatactgac catccgttcg aagaagtaat      1440
     gataaatatg aaattggcgg acggatcaca gacttacaaa ttagtcatgc ggacatcaac      1500
     taccatcgta attggtttga gaaaattccc gatacaattc attgccattc cggatgcaac      1560
     tgcaaataaa acattaattg gagctgattt catcaaatcc acaggactta taatcaacct      1620
     aagtcaagac gcctggtgtt tttcagacga tttaacaaaa tggcatctgt tcgactatac      1680
     tcagtcactc ccgaatgagc taactcacac gttagacgaa gaaatcgacc cgattcattc      1740
     tatgccacct ccagctgaaa caacagtcaa attatcacga cgtcaacgaa aacgtgccag      1800
     gaaaacgaag aattacaaca ttgccccatt ggttgattat tcacaagaca tgtcgagtgc      1860
     accactggat tcagcaataa aaccattgcc agcaactcct tacattccat gctctccagt      1920
     ctcattatca acccgtccac cgcaagaaat acttgaagaa acggaaatac caacgatttc      1980
     agatccaatt atggaagaaa tcaatttaat gggacaacaa ttatcaatca acgagatttt      2040
     gaagaaattc accagcccaa gctacttgcc agcgatgatt tctccaataa attcaactcc      2100
     ggaagctgct agaaaaatgg aggaaactca acacgaaatt cagtattacg agccaccgac      2160
     tagaaatact tcagtacaag atatacctct gttaatgata gatttaaatt tacgagctga      2220
     agaagcccca aatttaaaaa atcagcaaaa acacagcctg aatgacctca tcaaccaaca      2280
     caaggacatt tttaatgaag ctggaccagc cacaacgaaa atcgaacacc gaatcgatac      2340
     actaaatcac ttacctgtag catcagcccc atatcgatta cctgcagcaa aaagagaagc      2400
     actcaaagtg gaaattcaga aaatgctcga cgatgacatc atcgaggaaa gtgattctcc      2460
     atgggcatca aatgtcgtaa tgaaacttaa gccaaatggt aaatggcgaa tatgcataga      2520
     ctataaacgc ctgaatgaag ttacaatctc agataaatat cctctaccag tcatcgacga      2580
     tttattacaa gatgctcggg gtacactatt tatgtcaaca attgaccttc attcaggatt      2640
     ttggcaaatc gcaataaggg aagaagatcg ggagaaaaca gcctttgtta cccctttcgg      2700
     aatgtaccag tttaaaagga tggcgtttgg actgaaaaat gcttcagcca cgttccagcg      2760
     tctagcaaac agtttcagaa acagcttacc aaatatgaaa atccttacct atttggacga      2820
     tataattctg atctcaacga ctttcaacaa tcatttacaa gagcttgata aactcttcaa      2880
     acagcttcga caatttggtc taagagcaaa cagagaaaaa tgccactttg cttgttccga      2940
     agttaagtat cttggtcaca tcataacaca gcaaggaata aaagcaaacc ctgggaaaat      3000
     tgaagccatc cgatgcagga aaccacctca agatctaaag caattacttt catttatcca      3060
     aacgtgttct tggtatcgcc gttttatcaa aaacttcgcc gaaatcatca gacctttaac      3120
     caagctaaca aaaaagaatg ttaaatggga atggacacaa atggaacaaa atgcattcga      3180
     ccaactgaaa ctagcactat gttctgcacc agtacttcaa cagatcgatc cagataaacc      3240
     ttttatcatt aaaacggatg ctagtgccta cgcaatcggt gcagtactcg tacaaggcga      3300
     aaccgaagat gaacatccta ttgagtatgc aagccggtta cttacaaatg ccgaacgaaa      3360
     ctattctacg attgaacggg aagctctagc agttgtctgg gccatggaaa agttcagagg      3420
     gtacattgaa ggaggagtga ccttaatctc agatcatcaa ccgctgaaat ggcttatgtc      3480
     tataaaatca ccatcaggcc gattagccag atgggccttg agactgcaag catatgactt      3540
     caaaatactg taccaacctg gaagaacgaa tgtagttgcc gattgtttat cgcgacctcc      3600
     gtgcccggat gaatcagaaa gacacaacga agcacaagac tgtactatct gtatgctgca      3660
     aatcgacata ccatcgagag gcgcaaacga tatcagagaa caacagctta aagatgagga      3720
     attagccaag atcatcaaca tcttcgaaaa tgattcgaaa catgaagaat tcacaagata      3780
     tacaacaaga ggatacttca tgaatcaagg agttctatat cgctacaatc aatcagccga      3840
     cgaagactcg gaagacgcac ttctagtggt accattacat gaggtccaac gcatcttgac      3900
     agagtatcac gatgcaccga cagctggaca ttatggagtg caaagaacct tagctagaat      3960
     ttcagccaga tatacgtgga ctggcatgag aaaacaaata gcaacgtacg tcgacaaatg      4020
     taaggaatgt cagaaataca aggcacaaaa cctcaaacca gcaggattaa ttcagagcac      4080
     agcttcacat caacgatttg aaaccttggc aatggattta tttggaccac ttcccacatc      4140
     aaccgacgga ttcaaacaca tcctggtagt cgaagacttg gcaacaagat gggtcgaact      4200
     attcaaactc aaagaagcga cagcagaggc atgtgctgaa atcgtactaa acgaaatctt      4260
     catgcgattt gggctgccca gacgaatcgt aagtgacaat gcaagtcaat tcgtatcatc      4320
     ggtaatgcag aaattaactt tctgtctcga cattgaacat atcttgctgc ctgtctacca      4380
     cccacaagca aacccagttg aaagaaaaaa cagagacctg aaacatcaat tggccataca      4440
     agttggaacg aatcaatcaa attggtcaac acaattagcc gcgattagat ttgcaatgaa      4500
     tacagctcga aacgccagca caggctatac accggcctac ttgacatttg gtcgaaatct      4560
     tcgaacgaaa gaagatttac gcaacgacat acgacagata gtaatcagcg aaaattttgt      4620
     acctgaaata acaccacgat tgcttcaact tacagagacg tttcggcaag taaaagaaaa      4680
     tgtggagaaa atgcaaaatc aaaatcaaac acagagcgac atacatcgac gaccggatcc      4740
     aggttatcaa ccaggagata gagtactaat taaaacgcat ttacaaagca acaaggacaa      4800
     gaatttttct gcaaaattag cacctaagcg agatggccca tatgtgatat tacaaaaaat      4860
     tggagcagca acatacgaaa ttgcatccac tcaagatcca gacaaaccaa ttggaacata      4920
     tcatacatcg gacatcacac tgttcaagga agaagaaggc aagcaatcag caactgaaga      4980
     gcctagctat ccattgagaa agagaggaag accaagaaaa caacaataag ctgcaccata      5040
     cactaagttc agcagcctcg gaaccctcac cttctaaact tgggggggta                 5090
//
ID   Gypsy-9_BrCo-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.03, Created)
DT   10-FEB-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the dark-winged fungus gnat genome -
DE   long terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_BrCo-LTR.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-404
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the dark-winged fungus gnat genome.";
RL   Repbase Reports 21(3), 1397-1397 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 404 BP; 144 A; 82 C; 75 G; 103 T; 0 other;
     tgtagcgtca cacacattca aatatttgtg cgctaccaac aatcaaacat caatcagaca        60
     acatcaccaa caggtggcat caacacacaa gtcaatgtca aagtcgaact tggaggagaa       120
     cagaaagaag gggaaatgca gcggccatat tgaaatcaag cgtatataat caggacaacg       180
     ttgcatggaa actcattcaa tgttcagcct ttgcgtgctc gccttaatat tagacagtac       240
     ctaagtatat gaataaaaga atattgtatt tttggaggaa agttgtttat gtatgacgtc       300
     gatgctattc tttgaaaagg aacacgcctt attttagact gttctaatca aattgattag       360
     cacctggcca actaaaaagt accccatagc agcaaacctc taca                        404
//
ID   Gypsy-9_BTa-I repbase;    DNA;    INV; 4968 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, internal portion,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_BTa-I.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4968
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 588-588 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking LTRs are ~95% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..4742
FT                 /product="Gypsy-9_BTa-I_1p"
FT                 /translation="MSDGETDPPQPQGLEAKLAQLTDLVLQLAASQSSPTV
FT                 QSASRFSFDAFSTTSQEQIEDYFDRFELKLNLCHVPKTQWANQARVHMGPE
FT                 LNASLNALCFPVLPSSLDFASLKNKLISHYAKSRNKFSEAITFRKIHQHAD
FT                 ESISDFVSRLKTGARYCEFGDFLDYSLSIQFIHGLFSDDIRDEIVTKQPAN
FT                 FDAAVAVATNLESSFQASAILKPTSAQHSTTISKFSHETRPKLKKNSGNYR
FT                 SRSHPHSKNSHRSPSHSKNSHRNPSHSKNTNSCLSCGGSHNRSTCKFNNAV
FT                 CNYCKIRGHIVNACKKKKYSNGKEVHDNTRNNSDNSKVHDFRPDSDTYYLQ
FT                 HQFKSISGGSPPILLDVLINGKSLRMELDTGGPCSLISHSTLQKLFPRARM
FT                 TKINESFTSYTQTKFNCIGYIWAKVTFRNRTEYLKLFITDIPGDNIFGRQW
FT                 IKPFADLLSLHELLHNQTDINNVCAHNSLNKMDSINLNKFLDKHKDIFGDK
FT                 AGTLTGPPLDFHFKPGAKPKFCRARPLPYSMLDQYAAQIDEKIKSGFYKMV
FT                 DHSEWASPTHVVVKNNKLRITGDYKTTLNPNLIIDDYPIPRPEELFAKIRG
FT                 CKYFCKLDVKDAFMHLRCSQAACEAMTLNTPTHGLIQPTRAQYGVSNIPAA
FT                 WQRRLEQILKGIKGAVNFFDDILVFGSSIEEIFAILDKLFQKLREAGIILS
FT                 REKCQFFLTFIEFLGHMLDGEGIHKLDKHVQAIVQAKKPESAEELRTFLGK
FT                 VTYYHSFIDNLSTRTYPLRQMLQTSHFEWTKAGLAAYEDLKSELISDKVLT
FT                 PYDPSLPITLAVDASPVGLGAVLSHIMPNGTERPIAYASKSLSETQQRYVQ
FT                 LDREALAIVWGIKRFFQYIYGRLFTLITDNEPLSHIFAPDSLLPKFTLSRC
FT                 SNYASYLTNFTYNVKFRPSKQNANADYLSRSVNGNYDPTDDLPDHFHSFVS
FT                 AQIDQLPLSTEAIALETQQDPELSTLFQALEQGKDLKTLGFKGNQLEYSIV
FT                 QGCLMLGHRVVIPQKFRQKLLDELHLAHLGITKMKGIARSIIYWPNIDKDI
FT                 ESIAKSCIPCLENSRMPPKCNNHVWEYPKKPWERVHADYAGPIFGKFLLIV
FT                 VDAFSKWTKIFITSSTTSEKTSELLFDSFAEFGIPDILVTDNGPQFTSAEF
FT                 RSFLTDQGVRFHRRIAPYHPSTNGQAERYVQSVKQALRAMNATPKTLRLCL
FT                 NKFLMHYHRAPHQTTKVPPSSLFLNRIIRTKLDIISPLSESHLSPTEENLE
FT                 ECSSSIDLKNPSVSSQASPKGSLRSFQAGDTVLFRTYNSKIKWLKGTIAVK
FT                 LGKLHYYVDHQGTQHKRHIDQLLPFHSNSTSSVQPRRIRFLDEIQVVTQES
FT                 PTKQRSNFSGSSPRKQPPLQIIQTPVPTKQSSLPTNSQTSQNSSQQQGTQA
FT                 CQDSSQSQHTPESQTSRSSPQVQSQPSNDRSPPKQQSPISLQQSNKALVTP
FT                 TSQARPLNVKSPETFFTPDETAVVITLDESPPKSTNRTPLSSVSRPPSVGR
FT                 GRAIIRKSIRPSKPPDRYTPP"
XX
SQ   Sequence 4968 BP; 1486 A; 1231 C; 820 G; 1431 T; 0 other;
     aatggcgacg agtttaattt cttccgatct tcaaaattcg gaactctctc tcttcaacgt        60
     gtttttgcgt taacggtcgc gtttttctcg cgctatcgct cgaccccgtg ccgtgaagtg       120
     tgcatcgcat catgtcggat ggtgaaacag atcctcctca acctcaaggc ctcgaagcta       180
     aactcgccca attaactgac ttggtcctgc agcttgccgc ttcccaatct tcaccgacgg       240
     tccaatccgc ctcccggttc tcttttgatg ctttctccac aacgtctcaa gaacagatag       300
     aggattactt cgacaggttc gaactcaaat tgaacttatg ccatgtgcct aaaactcaat       360
     gggcaaacca ggctcgagtg cacatgggcc ccgagttaaa tgcatcatta aatgctcttt       420
     gttttcctgt ccttcctagc tcgcttgact ttgcatcact caaaaacaag ctcatttctc       480
     actatgccaa atcgcgtaac aaatttagtg aagccatcac cttccggaag attcatcagc       540
     acgctgatga gtctatatca gattttgtgt ctcgcctcaa gaccggtgcg cgatattgtg       600
     agtttggcga cttcctagat tactcgctta gtattcagtt catccacggc ctgtttagcg       660
     atgacatccg cgatgaaatt gtaacgaagc aacctgccaa cttcgatgct gctgtcgctg       720
     tggcgactaa cctcgaatct tcctttcaag cctctgccat cctcaagccc acttctgccc       780
     aacactcaac cactatcagc aagttttcac atgaaactag acccaaactc aagaaaaact       840
     caggaaacta tcggagccgc agtcatcctc acagtaagaa ctcacaccgc agcccttctc       900
     acagtaagaa ttctcatcgc aatccttctc acagtaagaa cacaaactct tgtttatctt       960
     gtggaggttc tcataaccgc agtacatgta aatttaataa tgctgtctgt aattactgta      1020
     aaatccgagg tcacattgtc aatgcatgta agaagaaaaa gtactctaat ggtaaagaag      1080
     ttcatgataa taccagaaac aattctgata attctaaagt tcatgatttt cgtcccgatt      1140
     ctgatactta ttatctgcaa catcaattta aatcgatctc tggcggcagt ccaccaattt      1200
     tgctcgatgt cctcatcaat ggtaaatcac tccgtatgga gctcgacaca ggtggtccct      1260
     gtagccttat cagtcatagc acgctccaaa aattatttcc tcgtgccaga atgactaaaa      1320
     ttaatgaaag tttcacctct tacactcaaa ctaagttcaa ctgtataggt tacatttggg      1380
     ctaaagtgac tttcaggaat cgtactgagt acctcaaatt attcatcact gatatccctg      1440
     gcgataacat ttttggtcgt caatggatta aaccttttgc agatctcctc tctcttcatg      1500
     aactcctcca caatcaaact gatattaaca atgtatgtgc acacaattct ctaaataaaa      1560
     tggactctat taaccttaac aagtttctcg acaaacacaa agatattttt ggggataaag      1620
     caggtaccct cactggacct ccccttgatt ttcacttcaa gccaggtgca aaacctaaat      1680
     tctgtagagc tcgaccgctt ccctattcca tgctagatca gtacgctgcc caaattgatg      1740
     aaaaaatcaa atcaggattc tataaaatgg ttgatcattc tgagtgggct agtcccacac      1800
     atgttgttgt caaaaacaac aagctgagaa ttacgggcga ttataaaacc actctcaatc      1860
     ctaacctaat aattgacgac tatcctattc ccaggccgga ggaactcttt gcaaaaattc      1920
     gtggctgtaa atacttttgc aagctggatg ttaaggacgc attcatgcat cttcggtgct      1980
     ctcaggctgc atgcgaagcg atgactttga acactccaac gcatgggtta atccagccta      2040
     caagagcgca gtacggtgtc tctaatatcc ctgctgcctg gcaacgtcgt ctggagcaaa      2100
     ttttaaaagg tatcaaagga gccgtcaatt tttttgatga tatattagta tttggttcct      2160
     caattgaaga aatctttgca attcttgaca aactttttca gaagctgaga gaggcgggta      2220
     ttatactctc tcgcgaaaaa tgtcaattct tcctcacatt tattgaattt cttggtcaca      2280
     tgttggatgg agaaggaatt cataagctag ataaacatgt tcaagctata gttcaagcaa      2340
     agaaacctga gtctgctgaa gaacttcgaa catttttagg caaggttacg tactatcatt      2400
     cttttattga taacctctcg acacgcactt atcctctaag gcaaatgctt caaacctctc      2460
     attttgaatg gaccaaagct ggtttggctg cctatgaaga tctcaaaagt gagctcattt      2520
     ctgacaaggt attaacacct tatgatccca gtttaccgat aacgcttgca gttgatgcaa      2580
     gtccagtggg actcggtgct gtgttgtcac acatcatgcc aaatggcact gaaaggccaa      2640
     ttgcctatgc aagcaaaagt cttagtgaaa cgcaacaacg ttatgttcag cttgatagag      2700
     aagccttagc tatcgtctgg ggtatcaaac gtttttttca gtatatttat ggtcgtttgt      2760
     tcaccctcat cacagataat gaaccattat cacacatctt tgctcctgat tcattattgc      2820
     caaaatttac tttgtctcga tgctcaaatt atgccagtta tctcactaac tttacttata      2880
     atgtcaaatt tagaccctca aaacagaatg ccaacgctga ttacctctct agaagtgtca      2940
     atggtaacta tgatcctact gatgatcttc cagaccactt ccactctttt gtatcggcgc      3000
     aaattgatca attgcccctc agcacagaag ctatcgcttt ggaaactcaa caagacccag      3060
     agttgtctac actcttccaa gctcttgaac aaggtaaaga cctcaaaact cttgggttca      3120
     aagggaatca gctggaatac tctattgttc aaggatgctt aatgctcgga catagggtcg      3180
     tcatccctca aaaatttcgt cagaaattat tggatgaact gcatctcgcc cacttgggaa      3240
     tcaccaaaat gaaaggcatt gctcgctcca tcatctactg gcctaacatc gacaaagaca      3300
     tcgaaagtat tgcaaaatct tgtattccat gcctcgagaa ttcaagaatg ccacccaaat      3360
     gcaataatca tgtttgggaa tatccaaaaa aaccctggga acgtgttcat gctgattatg      3420
     ctggaccaat ttttggcaaa tttcttctga ttgttgttga cgcattttca aaatggacaa      3480
     aaatcttcat cacaagctct acaactagtg aaaaaacttc tgaactgttg tttgattcct      3540
     tcgcagaatt tggaattcca gacatacttg taacggataa tggtcctcaa ttcacttccg      3600
     ctgagttccg atccttcctc accgatcaag gggttagatt ccacagaaga atcgctccgt      3660
     accacccaag tacaaacgga caagcagaac gatatgtgca atcagtgaaa caagctctca      3720
     gagctatgaa tgctactcca aagacacttc ggctctgctt aaacaaattt ttaatgcact      3780
     atcatcgtgc tcctcatcaa accactaaag ttcctccatc atctcttttc ttaaacagaa      3840
     tcataagaac aaaacttgac atcatctcac cactctctga atctcactta agtcctacag      3900
     aggaaaatct cgaagaatgc tcctcctcaa tagacctcaa gaatccgtct gtttccagtc      3960
     aagcctctcc aaaaggttct cttcgttctt tccaagctgg agatacggtt ctttttcgaa      4020
     catataattc aaaaatcaag tggttaaagg gtacaatcgc agttaaacta ggcaaacttc      4080
     attattatgt tgatcatcaa ggcactcaac ataaacgtca catcgaccaa cttctacctt      4140
     ttcactccaa ctctacctcc tcagtacaac ctcgtcgaat aagatttctt gatgaaattc      4200
     aagttgtaac acaagaatct cctaccaaac agcgttcaaa cttcagtggt agctctcctc      4260
     gcaaacagcc tcctctacaa atcatccaaa ctccagtacc aacaaaacaa tcttctctac      4320
     caacaaactc acaaacgtct cagaactctt ctcaacaaca aggcactcaa gcatgtcaag      4380
     actcctcaca atctcaacat actccagaat ctcaaacaag ccgaagctct ccgcaagttc      4440
     aaagtcaacc aagtaatgat cggtctccgc ccaagcaaca atctccaatc tctctacaac      4500
     aatctaacaa agctctagtc actccaacca gtcaagcaag acctcttaat gtcaaatctc      4560
     ccgaaacatt ttttactcca gatgaaacag cagttgttat tactttagat gaatcaccgc      4620
     ctaaaagtac aaatcgtacc ccactatcta gtgtatctcg acccccctca gtaggtagag      4680
     ggagggcaat aattagaaaa tctatcagac cttccaaacc tccagatcgg tatactcctc      4740
     cttaatctat caatacatac caatctgtct gtaataattc actctattga aattttattg      4800
     tttaaaaggt ataaatactc taactcatct cctgccctta cagctcttga aaattgtaaa      4860
     tccattctct ctgtatgttt ttttcttgta cattttaaat cagagcttaa atctttcttg      4920
     tatgttttcc ttttaaaatc cctcagattt taaaatgggc agggagac                   4968
//
ID   Gypsy-9_BTa-LTR repbase;    DNA;    INV; 161 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   17-MAY-2018 (Rel. 23.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_BTa-LTR.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-161
RA   Bao W.;
RT   "LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 614-614 (2018).
XX
DR   [1] (Consensus)
XX
CC   Flanking sequences are ~95% identical to each other.
XX
SQ   Sequence 161 BP; 35 A; 33 C; 33 G; 60 T; 0 other;
     tgttatgtag cagttggtag tatgtacgag tagtgatatt gtcgctactt aggtgtcagg        60
     cctgcagggc aagcttgtat ctttatcaat atactctgtc gttatgtcac gcaactcgtg       120
     cacttctctt ttccatcatc cttagttttt ccgatataac a                           161
//
ID   Gypsy-9_CFl-I repbase;    DNA;    INV; 5001 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon from the Camponotus floridanus
DE   genome, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_CFl-I.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-5001
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1024-1024 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 5001 BP; 1413 A; 926 C; 1345 G; 1297 T; 20 other;
     ttttgggggc tcgtccggga tcgaccggac tagacggata atwgtgtgwa agtgacsgac        60
     aaccgtgaaa gagtgatggc gacaatagcc gtgaaaagga ggaggcgcga gcagtccgag       120
     ccgccgtcgg aagcgcgggc gacggaaccg cgggcgccgg aggcagcggc gacggaggca       180
     gcgggacgga gacagcggcg acggagtctt ccgctctgca tactgtcctg ctggagatgc       240
     ggcggatgcg cgaggagcag gcgcgacgcg aggaggagat cgccgcgatg ctgcgccgac       300
     acgacgagga aatccagctt cttcgsggga gccggctaca gccttccaca cagctaagtc       360
     cttccgagtt tagatcgggg tctcgggaaa gtcgcgactc ggagatwcgw aacgagaccg       420
     gwtataagct aaagccggat acattcgacg ggacggtttc gttgcgggaa tttttctcgc       480
     aattctccct gattgcgcgc gcgaatcgtt gggacgacgc gacgaagacc gttgtgttag       540
     cgtcgtgttt gaggggaaag gcgcgctctg ttttggagtc aatggaggat ttggagactt       600
     gttcttttga ggaattaaaa tccaagcttg aattgcgttt tggcgagggg caattgtctc       660
     agaattgcta tacgcaattc acgaacagga aacagaaatt cggggaggat ttcgcgactt       720
     tcggttcgga gttagaaagg cttgctcgtt tggtctaccc gaatgttcat tcgcagtgcg       780
     ggataaaatt gcttgcgcgc aatttgtttc gtcgcttctc gacggatttg tgaggaggac       840
     ccttcagtta gaaggaataa cttccctaaa attagccgta gaaagggcga aggccgtaaa       900
     aataattcag ggggagaatt ttgagaggaa aagggattac gaaaggcggt ttgaaaaagg       960
     aaagggggac gcgcggactc atgaaaaaaa gagtaaggaa gaagaaaacg gaaagaaaaa      1020
     ggggtacgag aggggaaact ggaaaaagcc taacacgaaa gagtgttggc tttgcgggaa      1080
     aactggacat ttccgtgcag awtgtcctga gaatgaggga aacacggctt agttgctctc      1140
     ggcgggggga gaacaactgg gaggaacgaa accccgctgt atataaatcg tataggatta      1200
     aattcggact gtttcaatta taaagggaaa ttagacgata gtgagtgtaa ttttaagata      1260
     gatacgggct ccgatatttc tattctcaac aggaagttag ttagggaaga taagcagaga      1320
     attccagtaa aaaagggcac aattagttat ccctctgggg aggaggtccc catcaawttt      1380
     aaagtaagag cgacggttgc tctgggaaag ttcaccaaag aaatttctat gtatgtgctg      1440
     gagatgaatg aggactgttt attaggcgtw gattttctga aggaggcwgg tttagaaaat      1500
     gtttttgggg aagctttcgg tttttcggag ttcawggaaa agcgaaatct taattgctca      1560
     cggatccaaa atttttctga aaaagtccct tcaattttga aagaacttta cgcaaatgat      1620
     tctgtggact tagataagtc tcaaaaagac gtttttgcgg gccttttgtt cgaatatgaa      1680
     gatatatttt ccgaaaagat cgttgctgga aattgcgata ttttgactca tgttattaac      1740
     ataaaagatt cttctcccat taagcaggtt cctcgtcgta ttcctataca gatgcggagt      1800
     gaagtcaata aaataattga ggaaatgaaa gatcagggag tcatagagga gtctcaaagc      1860
     ccctggactt ctcccgttgt tttggtaaag aaaaaagatg gaacgataag attttgtgtg      1920
     gattttcgga aactcaacga agtaactaaa agagactcct atcccttgcc taaaatagak      1980
     gaagtgctcg accaactttc aggtaattct tggttttccw ctttagatct taagagcggc      2040
     tattggcaaw taaaaattcw ccccgcgggc agggaaaaga ctgcsttttc tatcgggcgg      2100
     attgtggcag tttaccgtaa tgcctttcgg gctgtgcaac gcccccgcta ctttcgaacg      2160
     tttaatggaa aaagttttgc aaggattatt gtttaaaatt tgtctggtct atttggatga      2220
     tgtaattatt ttcggaaagg attttcttga gatgacggaa aatcttaaac aagttttcgc      2280
     tcggttacgt tccgtcaatt tgaaagtaaa tccgaagaaa tgtattcttt acgcgaaaaa      2340
     agtaaaatac ttagggcaca tagtttcttc gggaggcgtt accacagatc ccgaaaagat      2400
     ttccgccgtg agggactggc caattccaca tactaagaaa caacttcgaa gctttttggg      2460
     gttctgttct tattatcgaa aatttgtcaa aggattttct tccttggcta aacctttata      2520
     taccctgacg gagaatcagg ctaagttttc ttgggatgag caatgtcaaa atgcttttat      2580
     ggaattgaaa caaaacttat cttcttctcc tacattagct tttccaaggg agagggagaa      2640
     tttattttgg atactgatgc ttcaaatatt ggaattggtg cagtcttatc acagaatcag      2700
     gaaggaaaag aaagaataat cgcttatttt agccgcgtat taagtaggac cgaaagaaac      2760
     ctattgcgtc acacgtcggg aacttttagc gatagtagat tctataaaat ttttccgaca      2820
     ttaccttcta ggacgaaaat ttttgatccg aacggatcac gtttctttga agtggcttct      2880
     gtctttcaag gatttagaag gacaattagc acgttggctg gagagactcc agcaatacga      2940
     atttgaaatt atttatcgga aaggccggat ccataaaaac gccgatggac tttccagacg      3000
     gcattgtgaa tcttctggtt gtgtgtattg ttccaaggtt gaaaggaaga atacgaagga      3060
     gcttcaaaaa tccgttgctc ggatctttct tacgggaaac actcttcagg attggaaaag      3120
     agagcaatca gaagatccta gcctctcttt gatttaccgt ggaaaggaga caggcatacg      3180
     tccactccgt tcggagatac ccggtggaga tgtttccgcc cgaatttatt ggttctattg      3240
     ggacgcaata agtttggaaa atggagttct atataagaaa tgggaagcgc caaatctcag      3300
     atcgagcatc tttcagctta ttgttcctcg gagcaagttg atcgaatttt agaagcggcg      3360
     cacgattctt cttcaggagg acactttggg gtcaataaga ccttggataa gattcgtaag      3420
     cggttttatt gggccacttg taagcaggat gtgcaggagt ggtgtagaac ctgcaaagta      3480
     tgtgtatcaa agaagggctc tttaggaaaa gggaagtccc cgttacaaat atataacgtg      3540
     ggagcccctt ttgagagact acagatggat gtcctaggtc ctcttcctac taccacccga      3600
     ggaaacagat atcttcttgt catcgtagac tgtttcacca aatgggtgga ggctttccct      3660
     ctgaagaata tcaaggcgag gacggtggca gaagtctttg tcaaccagat agtttccaga      3720
     catgggatcc ctcgggaaat ccatacggat caaggaaaga acttcgaatc taagttgttc      3780
     gcggagttga tgaatcttct tggaattaaa aagacgagga cgactgcttt acatcctcaa      3840
     tcagatggac aggtcgagcg tcagcattta accatcatta attatttgtc caaatttatt      3900
     tcagaaaacc aaagagactg ggatagttgg attcccatgt ttttattagc gtacagatct      3960
     tctaaacatg aaaccactgg ttttactcct gccgagctgt atttgggtca tgatcttaga      4020
     ttgcccttgg atctactcct gggaagtcca ccaagggagg aatctcaatc cgaagctgac      4080
     ttcgcttcga gtctaagaga aaaattggat agaatccatt ccgaagttag agggcggatg      4140
     gacataaaat cttcccgaat gaagagctgg tatgaccgca atgccagaca aattcttttc      4200
     caagaggggg agaaggtgtg gttctwtaat cctcgaagaa ttaagggaag agctcccaaa      4260
     cttcaatcta attgggaagg cccttttgwa gtagtgaaga agttaagcga tgtggtgttt      4320
     tgcatacaaa aatccgttag gcataagagg aagatcgtcc atgcggatag actagctcct      4380
     ttttctgaga gacgataggg tagattagat agggaatagc ttggagcccg taatagaaat      4440
     taagatagga attaagtttm tttttctcag ttattgcgtt ttcttgttat tttattcaac      4500
     aggagagagt gttttctgaa tggaaaagga gaaggaaagc tgacatgagt cgtgagatgg      4560
     agatttaaca acgggaactt ccaaagagaa gactgcctcg cccacggttt ttgagccgtg      4620
     gttttcccgt gggccggagg gcgaatgccg aggcagggac ttggggagtc cttttgggac      4680
     gacgggtcca cggtagatac ccccctcttg tccgaagaaa gtcacgggag gagaaggacc      4740
     gaaaaggact cgcgccggga acaggaagat ggctggaatg ggaggctgcc ctggagtcgg      4800
     ttcttgagag cctggccagc tctctggaag gaatcggttg ggagcctgcc cggtggattg      4860
     gggcctgatc ggaacgatgc tcggtaaccg ggagcagcag ctcagggaga gcaggatatc      4920
     gttcggggtt cctggaagtc cacgatggtc attgagcccc ttgctgattg tcgggacgac      4980
     aatcttgaag aggaggggca g                                                5001
//
ID   Gypsy-9_CFl-LTR repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   11-JUN-2012 (Rel. 19.04, Created)
DT   11-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon from the Camponotus floridanus genome:
DE   long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_CFl-LTR.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-323
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 1025-1025 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 323 BP; 53 A; 79 C; 84 G; 107 T; 0 other;
     tgttacgcgc gcgcccgagt cgttacggcc ctgccgttgt ccggatcccg tcggcaggaa        60
     gattgtttac aaacaacgac tgtcagctga gtttggagcc agctgtctag ctgtgcggac       120
     gcgtttttct ctcgagccga tccgttgtgc tatttgtgtt ataattccgt gttatttatg       180
     ttaacgtttg tgttgccctg tgttgtgcat taaagttcct agtttctttt aaaagtgctt       240
     atttatttcg cgcgtctcgc gagcggccga tttcttcgtg cgcgacttcg atatctatcg       300
     aagtcctcgc cgcgggcgta aca                                               323
//
ID   Gypsy-9_CoFl-I repbase;    DNA;    INV; 4975 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome,
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_CoFl-I.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-4975
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2277-2277 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..1647
FT                 /product="Gypsy-9_CoFl-I_1p"
FT                 /translation="RSPARHVGKTSSPKGYVPPSRGRRSPVPTSRVAGPVX
FT                 RGRPRPGAELRPRAEPNVVTRAATLRARVCPPVPASPPLQELGGIQPRTPL
FT                 TTEYTWQDTEATVEQTSPVDPPLLGFHLQPVPANESTALQGFNLLPVPRSW
FT                 QALADTTPTRPADAREPRDVLRSRLFADLYPDAYAAAALAAAAADRSSDSP
FT                 ESSPDVHRDEKRHAAAVAVDHVPANDNITHSDPPAPSPVLSDSRANSSAGL
FT                 MTTMELLPFWPKHPATWFTQAELIFANNNTTSEDVKYAQVVKALGPIIVDG
FT                 LSDILAAPPAENRYEDLKKHVLARFSDSKDQQLHKLFSGLSLGNKKPSQLY
FT                 REMKSLAGNSLTDDSLRVKWLDLLPAEAQPFLRIFKSTSLDELLQAADELV
FT                 CNSSFLRTNHTFAGVSPVSSGYASPVPPHQLHNEILLQEIAALKAMITQLS
FT                 TTNKQLLELLKNNKGNGGARGRDRSRSGGRNQSPGAHAWCYFHRKFGVNAY
FT                 SCKKPCTFVVQATQPTGNA"
FT   CDS           1278..4973
FT                 /product="Gypsy-9_CoFl-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TRLQLFVLANKSHLRRCLACLLRIRLACPATPTAQRD
FT                 TAPGNRRAQGDDHAALYNQQTTARTAQKQQGQRRCQRPGQVAQRRTEPVPR
FT                 RSRLVLLPQEVRRQRLLLQEALHLRGTSHPTNGKRLGLPPTQTAEVTLPTG
FT                 ETRLLIRDHHLKVDFLLDSGSVVSILPRPPNFSQAQREALTLYAANHSPIH
FT                 TYGSWKINLNLGLRRDFQWEFIIADVAQAIIGADFLAEHGLLPDLKHKRLI
FT                 DPLTGLAVQGILCDTNLHSIATIEQLGPDDPDVASLYSSLLHEFADVFACN
FT                 SAPAVINCLPVQHRIITCGQPVFERPRRLIGERLAAAKAAIAELQDQGVVR
FT                 PSSSQWASPLHLVPKANNSWRVTGDYRRLNSITVPDRYPLPIIEDMLQESQ
FT                 GQVFTVIDLHKAFYQVPIASGDVKKTAVTTPFGLFEFLGTSLGLRNAAQTM
FT                 QRTMDQLLRKLPFVKAYIDDILVASQTHEEHLQHLRQLFTVLKQAGFKVNL
FT                 AKCTFGKPQVIYLGFQVSSEGCRPPTAKVEAIKVFPKPTTASELRRFLGVI
FT                 NYYRRCVPHAAELQAPLNELLKGLPKKAKLKWTTPASQAFDKCKASVIDAA
FT                 CTTFLAPDAPLALRTDASSTAIGAALEQLQPDESWRPLGFFSHKLDPTQAR
FT                 YSTYDRELLAIYASVKHFERILEGRPFTIFTDHRPITFAAFQPATKASPRQ
FT                 ARYLEYILRFNSRLVYAKGEDNVVADALSRPQDDPETPPPEASTPAAKPIE
FT                 VATTDVAPTTQLQTPVATVAMPSILSPAVIAQEQAHDAELLDLXGNPXNNL
FT                 VLQQLNIEGHYVYGDITQGVVRPYLPASLRRTAFDVVHALSHPSGKATART
FT                 LSQKFVWPGVRKNALAWAKTCEACQRSKISRHNRSALGRFTEPDNRLEHVH
FT                 IDIIKMPLVAGMQYCLTIIDRFTRWPQAIPLSNIQAPTIAKAFFDHWISFF
FT                 GTPLLITSDRGAQFESSLFKELAQIIGTKLCHTTSYHPQSNGMVERFHRTL
FT                 KAALRCCPQSWLDCLPTVLLGLRTAYKEDLQASPAEMLLGFSPRIPGEFFT
FT                 TESVQANQSTFARSLRQLLRAIRPVPASNHSAQHPFCFKDLSTCSHVFKRV
FT                 DRIRKPLEPPYTGPHRVVRRLDERNYVLDTNGKEEVVSTDTLKPAYMEQAD
FT                 SFLEQPTAPSTAAQPPPQPLPPAPNTAAQPEAPSAADQPSPQPTSTPTAQA
FT                 AQSSATRHVSFPALTPVTGEGV"
XX
SQ   Sequence 4975 BP; 1142 A; 1752 C; 1217 G; 857 T; 7 other;
     agtggtgacc cctcgaactg ttttatttat cgtgagtgca agttcgcgat gaaaagttga        60
     gccgaggcga ggataaactc ttcgcgcacc gmcatctttt aacgctctcc cgctcgccac       120
     gtgggcaaga cgtcgtcgcc aaaaggctac gtcccgccgt cgagaggccg gcgctcgcca       180
     gtgccaacgt ctcgggtagc agggccagtg maaaggggac ggccccgccc tggagccgag       240
     ctacgaccac gcgcagagcc caacgtcgtt acacgggctg caacgttacg tgcccgcgtg       300
     tgtccccctg tgcccgcctc gccgccatta caagagttgg gtggcatcca acctcgcact       360
     ccattaacaa cggaatatac gtggcaggac acggaagcga cagtcgagca gacgtctcct       420
     gtcgatccac cgctgctggg gttccacctg cagcccgttc ctgccaacga gagcaccgcc       480
     ttgcaaggtt ttaacctgct gccagtcccc cgctcctggc aagcgctagc agacaccact       540
     ccaacgcgcc cggctgacgc gcgtgagcca cgagacgtgc tgcgaagcag gcttttcgcc       600
     gacctctacc cggacgcgta cgctgccgct gccctcgctg ccgcggcggc cgacaggtca       660
     agcgactctc ccgagtcatc cccggacgta cacagagacg aaaagcgcca cgcagcagcc       720
     gttgccgtcg accacgttcc ggctaacgac aacattacac acagcgaccc gcccgcgccc       780
     agcccggtcc tttcagactc ccgcgccaac tccagcgctg gactcatgac caccatggaa       840
     ctacttccgt tttggcctaa acaccctgcc acatggttca cgcaggccga gctcatcttc       900
     gcgaacaaca acaccacctc cgaagatgtg aagtacgctc aggtcgtcaa agcgttgggg       960
     ccaatcatcg tcgacgggct gtcggacatc ctcgcagcac caccagcaga aaacaggtac      1020
     gaagacctta agaaacacgt ccttgcgagg ttctctgact ccaaggacca acagctgcac      1080
     aagctgttct ccggactgtc actgggcaac aagaagccct cacagctgta ccgcgagatg      1140
     aaaagcctcg ctggcaacag cctcacagac gacagcttga gggtcaagtg gctggacctg      1200
     ctacctgcag aggcgcaacc tttcttgcgc atctttaaat ccacgtcact tgacgagcta      1260
     ctacaggccg cagatgaact cgtctgcaac tcttcgttct tgcgaacaaa tcacaccttc      1320
     gcaggtgtct cgcctgtctc ctcaggatac gcctcgcctg tcccgccaca ccaactgcac      1380
     aacgagatac tgctccagga aatcgccgcg ctcaaggcga tgatcacgca gctctctaca      1440
     accaacaaac aactgctcga actgctcaaa aacaacaagg gcaacggagg tgccagaggc      1500
     cgggacaggt cgcgcagcgg aggacggaac cagtccccag gcgctcacgc ctggtgctac      1560
     ttccacagga agttcggcgt caacgcctac tcctgcaaga agccctgcac cttcgtggta      1620
     caagccaccc aaccaacggg aaacgcctag ggctgcctcc gacgcagacg gcggaggtca      1680
     cccttccaac aggggaaacc cgtctgctca tcagggacca ccacctcaag gtcgacttcc      1740
     tactcgactc cggatccgta gtgtcgatcc tgccccggcc gccaaatttc agccaggccc      1800
     aacgggaggc attgaccctg tatgcggcca accactcgcc catacacacc tacggcagct      1860
     ggaagatcaa cctcaacctg ggcctacgtc gagacttcca atgggagttt atcatcgccg      1920
     acgtcgccca ggctatcatc ggagccgact tcctggcaga acacggtctg ctcccggacc      1980
     tcaaacacaa gcggctcatc gacccgctca caggtttggc tgtccagggc atcctgtgcg      2040
     acaccaacct gcactcgatt gcgacaatcg agcaactggg accagacgac cctgacgtcg      2100
     ccagcctcta ctcgtccttg ctgcacgaat tcgccgacgt cttcgcgtgc aacagcgcac      2160
     cagcggttat caactgcctc ccagtccaac atcggatcat cacctgcggc caaccagtct      2220
     tcgagcgccc ccgacgcctc atcggtgagc gactagcagc ggccaaagct gctatcgccg      2280
     agctccaaga ccaaggggtc gtcaggccgt ccagcagcca gtgggctagt ccactgcacc      2340
     tcgtgcccaa ggccaacaac tcctggcgcg tcaccggcga ctatcgccgc ctcaacagca      2400
     taacagtacc agacaggtac cccctcccga tcatcgagga catgctacaa gagagccaag      2460
     gtcaggtttt tacggtcatc gacctacaca aagcttttta ccaggtgccc atcgccagcg      2520
     gagacgtaaa gaagacggcc gtcacgacac ccttcggcct cttcgagttc ctcggcacat      2580
     cacttggcct cagaaacgcc gcgcaaacca tgcagcgcac gatggaccag ctgctgcgca      2640
     agcttccctt cgttaaggcc tacatcgacg acatcctcgt cgcgtcacag acgcacgagg      2700
     agcaccttca gcacctccgc cagctgttca ccgtcttgaa gcaggcaggc ttcaaggtaa      2760
     acctggcgaa atgcacattc ggcaaacctc aggtcatcta cctgggcttc caggtttcgt      2820
     cagaaggttg ccggccacca acagcgaagg tagaagccat caaagttttt cccaagccaa      2880
     ccacagcgtc cgaacttcga cggttcctgg gagtaataaa ttactaccgc aggtgtgtcc      2940
     cccacgccgc ggaactgcag gcgcctctca acgagctgct caagggcctg cccaaaaaag      3000
     ctaagctcaa gtggaccaca ccagcatccc aggcgttcga caaatgcaag gccagcgtca      3060
     ttgacgccgc ttgcacaacg ttcctggccc cagacgcccc cttggcgctc cgcacggacg      3120
     cctcgagcac agccatcggc gcggctttgg agcagcttca accggatgag tcgtggcgcc      3180
     ctctgggatt cttctcacac aagctagacc ccacgcaggc caggtacagc acgtacgaca      3240
     gagagctcct agcaatctac gcctctgtta agcatttcga gaggatacta gaaggccgcc      3300
     cattcaccat cttcacggat caccggccca tcaccttcgc tgcctttcaa ccagcaacca      3360
     aggcttcacc tagacaagcg cgctaccttg aatatattct caggtttaac tcacgcctgg      3420
     tctacgctaa aggtgaagac aatgtcgtgg ctgatgctct ctcccggccg caagacgacc      3480
     ccgagacacc gccccccgaa gcttcaacac cagctgcgaa accaatcgaa gtagcgacca      3540
     ccgacgtcgc cccaacgact cagctgcaga caccagtcgc caccgtcgca atgccctcga      3600
     tcctcagccc agccgtcatc gcccaagagc aggcgcacga tgcagagctc ctcgacctgm      3660
     taggcaaccc awcgaacaac ctggtactcc agcagctcaa cattgagggc cactacgtct      3720
     atggagacat cacgcaaggc gtggtgcggc cgtacctacc ggcgtctctc cggcgcacag      3780
     ccttcgacgt tgtgcatgct ctctcacacc ccagcggcaa agccacggcc cgcaccctga      3840
     gtcagaagtt tgtctggcca ggagtgcgca aaaacgcctt agcctgggct aaaacttgcg      3900
     aagcctgcca gcgctccaaa attagtcgcc acaaccgatc agcgctaggc agattcaccg      3960
     agcccgacaa ccgcctggaa catgtccaca tagacatcat caagatgcct ctagtcgcag      4020
     gcatgcagta ctgccttacg atcattgatc ggtttactcg ctggccacaa gcgatcccgc      4080
     tgtccaacat ccaggcaccc accatcgcca aagccttttt cgatcactgg atcagcttct      4140
     tcggaacccc gctcctcatc acctcagacc gtggtgccca atttgagtcg agcctcttca      4200
     aggaactggc ccagataatc ggcacaaagc tgtgccacac aacctcgtac cacccacagt      4260
     ccaatggcat ggtggagagg ttccacagga ccctcaaagc agccctgcgc tgctgcccgc      4320
     agtcttggct agactgcctc ccgactgtgc tcctgggact ccgcacagca tacaaagagg      4380
     acctgcaagc ctctccagcg gaaatgctcc tcggattctc acccagaatc ccaggggagt      4440
     tcttcaccac cgagtcagtc caggccaacc agtctacgtt cgcgcggagc ttgcgacaac      4500
     tcctcagagc catcagacca gtgcctgcct cgaatcactc ggcccagcac ccgttctgct      4560
     tcaaagatct gtcaacctgc tcgcatgtct tcaagcgtgt cgacagaatc cgaaagccgc      4620
     tggaaccacc ctacaccggc ccacatcgcg ttgttcgccg tctcgatgag cgcaactacg      4680
     tcctcgacac caacggcaaa gaagaggtgg tgtccacgga cacgctcaag ccggcataca      4740
     tggagcaagc tgactccttc ctcgagcagc ccacagcgcc aagcacagct gctcagccgc      4800
     caccgcaacc cctgccgcct gcacccaaca ccgcwgctca gccggaagcg cccagcgccg      4860
     ctgatcagcc stcgccgcaa ccgacgtcca ccccaactgc ccaagccgcm cagtcttcag      4920
     caactcgcca tgtctcgttc ccggctctta cgccggtcac tggggaggga gtgga           4975
//
ID   Gypsy-9_CoFl-LTR repbase;    DNA;    INV; 330 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Copidosoma floridanum genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_CoFl-LTR.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-330
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2303-2303 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs, often microsatellites.
XX
SQ   Sequence 330 BP; 83 A; 92 C; 72 G; 83 T; 0 other;
     tgtggcgtct cagccacagc gaccagcttc gtgctcaaga cgaaagcaga ccatcgtccc        60
     aaggaacatc ttttcctgcg cacgcgcgag ccaactcacg cacacactgc cggtgcgcta       120
     cagctgaggg agaagagtcg cgcggcgcta tacacttatt cttctactta tagctctcga       180
     cgtgagcaga gcgaaaaagt cctactgtac ataatgaata aaagccattt tgtattctta       240
     taataaaatc tgtcgcgtgt gcttattttc cctcgtgctc cttttcttgt ggaagcacag       300
     cttcggctgt gcagaacaat acttcccaca                                        330
//
ID   Gypsy-9_CQ-I repbase;    DNA;    INV; 1656 BP.
XX
AC   AAWU01032098;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_CQ_;
KW   Gypsy-9_CQ-LTR; Gypsy-9_CQ-I.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1656
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 397-397 (2011).
XX
DR   Genome; AAWU01032098; Positions   69627   71282.
XX
CC   'CGATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..1567
FT                 /product="Gypsy-9_CQ-I_1p"
FT                 /translation="MPEGDNIQPDGNLLYERLLQQNERLEAQNARMMEMLE
FT                 RFNLQDGSSRTSNGPEFIIETLASNIREFIYDPDNGLVFDRWYRKYEDLFL
FT                 KDGAKLDDAAKVRLLLRSLNVAVHDKYVNFVLPKHPRDIEFKETVKKLTEL
FT                 FSVQASLFSKRYQCFQLSKSESDDFVTYAGIVNKHCEDFELKKLTADQFKS
FT                 LLFICGLRSSKDADIRTRLLSMLEVNAEGACTLEALITECHRLQNLKHDTA
FT                 MVEHKPVSSVCAVKQDRDKPSPATGSSSSDSQSMKTQSALPPSPCWCCGDM
FT                 HFVRDCAYKQHVCQDCMQTGHKEGYCSCVPKKSKNKQQTNVNSLYAANRVN
FT                 STSKRKFLTVSINGSQASLQFDTGSDITVISRKQWCDNLDSPPLSPTKQIA
FT                 RTASGKSLSLLGELRCQVTLGGVTRTGTFYVTEKQINLFGLDWIELFELWD
FT                 TPMSAVCSGVTGKVNRVKQQRSLAVKSQGEANMKTGLGATDAASSQSESTA
FT                 WYEEHLR"
XX
SQ   Sequence 1656 BP; 425 A; 481 C; 439 G; 311 T; 0 other;
     ttggcgacga ggaaaaagca agatttttac ctttgaagaa gtgttgcgga tcacaagaat        60
     gccggaagga gacaacattc agcccgacgg taacctgctg tacgagcgac ttctgcagca       120
     gaacgagcgg ctggaggccc agaacgcgag gatgatggag atgctggagc gcttcaacct       180
     gcaagacggt tccagtcgga cttcaaacgg tccggaattc atcattgaaa cgctggcgtc       240
     caacatccgg gagttcatct acgatcccga caacggtctc gtatttgacc gatggtaccg       300
     caagtacgaa gatctcttcc tcaaggacgg cgcgaagctc gacgacgcag ctaaagtccg       360
     gttgctgctg agaagcctca acgtggccgt gcacgacaag tacgtcaact tcgtgctccc       420
     gaaacatccc cgtgacatcg agttcaagga gacggtgaag aagctgaccg agctcttcag       480
     tgtccaagcc tcgctgttca gcaaacgata ccagtgcttt caactgtcca agagcgagtc       540
     ggacgacttc gtgacgtacg ctggcatcgt caacaagcac tgcgaggact tcgaactcaa       600
     gaagctcacg gcggaccagt tcaagagcct gctgttcatc tgcggtttgc gctcttcaaa       660
     agatgccgac atccgcacga gactcctgtc catgctcgag gtcaacgcgg agggcgcatg       720
     cactttggaa gcactgatca ccgaatgcca tcgcctccaa aacctcaagc acgacaccgc       780
     catggtggaa cacaagccgg taagctcagt ctgcgcggtc aagcaagatc gggacaagcc       840
     ttcaccggcg acgggttcca gctccagcga cagccagtca atgaaaacac agtccgccct       900
     accaccatca ccttgctggt gctgtggcga catgcatttc gttcgagact gcgcctacaa       960
     acagcacgtc tgccaggact gcatgcagac cggccacaag gaaggttact gcagctgcgt      1020
     gcccaagaag tccaagaaca agcagcagac gaacgtcaac agcctgtatg ccgccaaccg      1080
     ggtcaactct acctcgaagc gtaagttcct gacggtgagc atcaacggtt cccaagcatc      1140
     tctgcagttc gacaccggct cggacatcac agtgatctcg cggaagcagt ggtgcgacaa      1200
     cttggattca ccgccgctgt ctcccaccaa gcagattgcc agaacagcct ctggtaagtc      1260
     actgtcccta ctcggtgagc tccgatgcca agtcacactc ggaggcgtca ccagaaccgg      1320
     aactttctac gtgactgaaa agcagatcaa cctgttcggt ctcgactgga tcgagctatt      1380
     tgagctgtgg gacaccccga tgtcagcagt atgcagcggc gtcactggaa aggtcaaccg      1440
     cgtcaagcag cagcgttctc ttgcagtcaa atcgcaaggg gaggcaaaca tgaaaacagg      1500
     tctaggtgca accgacgcag cttccagcca gtccgaatcc acggcatggt acgaagaaca      1560
     tctccgctga tactgttccc aatatctcac cgcttgaaga tggcgagcga tctggatcac      1620
     atcaagtcgc accctgtgct ggtcttaagg gggaga                                1656
//
ID   Gypsy-9_CQ-LTR repbase;    DNA;    INV; 133 BP.
XX
AC   AAWU01032098;
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   LTR retrotransposon from the southern house mosquito: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_CQ_;
KW   Gypsy-9_CQ-I; Gypsy-9_CQ-LTR.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-133
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 398-398 (2011).
XX
DR   Genome; AAWU01032098; Positions   69494   69626.
XX
SQ   Sequence 133 BP; 54 A; 39 C; 17 G; 23 T; 0 other;
     tgttgcacac cctggactaa cgaagcaacc cattcaagca atcgaagcaa ccatcaatca        60
     atcaagcgat cattccactt ctgacactcg aacaaacaag aagcaataaa atcagctctc       120
     acgaaataca aca                                                          133
//
ID   Gypsy-9_DAn-I repbase;    DNA;    INV; 5739 BP.
XX
AC   AAPP01018802;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DAn_;
KW   Gypsy-9_DAn-LTR; Gypsy-9_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5739
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018802; Positions  397804  392066.
XX
CC   Positions [3201-3704] - Reverse transcriptase
CC   Positions [4782-5291] - Integrase core
CC   'AAGG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           961..2442
FT                 /product="Gypsy-9_DAn-I_1p"
FT                 /translation="MGLDRSPQKEGHPPSSECKLCNSEIRAADSYKTKCQH
FT                 VFHKACFRTHLAVKRTCPICESICIDQRISQPPTSAIQTRQRTRLETISRS
FT                 GSELDLTASTSQERSRQDQITVCNTPVEEMSQITTEISAAVKAMQNELLTQ
FT                 LTERMANLIQTNVEVQMSNIDQQRATVNPNTSRNSSLEQVLGINMPPTEQY
FT                 SVPQRPSSSRSLNSDLAQRPDKVGHILSNWKLRFSGSSDTIGVDSFIYRVE
FT                 ALTHQTLEGNFSLLCGNANMLFEGKASDFFWRHHKAVGVVRWQELCAALRK
FT                 QFRDSRTDVDIRQMIRDRKQRDKESFESFYDSILKLTDRLSQPISEETLVE
FT                 IVRRNLRPEIQHEILNLSFESMENLRDTVRKRELFIEEMRKHHGYQKPLPL
FT                 RKPISELCEEVEADDAEEFGEEELQEEISAFALVCWNCRKEGHRYQDCASK
FT                 RKIFCYGCGLPNAYKPSCERCTKNSRRNTATPRSKASVPNRQTGLEDQQ"
FT   CDS           2355..5663
FT                 /product="Gypsy-9_DAn-I_2p"
FT                 /translation="MHKKLPQEHCNTAFQSKCSQPTDRLGGPAVVSGGGAL
FT                 RVENSPSGDAGLQVWHTKLEKFRRLHLPMLKNEGRSVSRNSRRQKNYWRTI
FT                 KEIASIRKNVGDNRPYAEVTLLEKKRRGLLDTGAAISCIGGQLAEEYICSR
FT                 KPFKKVLAGACTADGNKQQIIGKFKTEIEYKGIKRELEFHIIPSLRQDIYL
FT                 GIDFWTAYELLPPTLAISEISGDAEQHSISRWQQLKLEKVIKSFPSFAISG
FT                 LGRTSVLSHAIDTGSAKPIKQRHFPVSPAIEKLLYAEVDRMLKLGVIEESD
FT                 SPWSSPVVLVQKPGKVRVCLDSRKVNAVTEKDAYPLPQIDGILSRLPKANF
FT                 ISSLDLKDAFWQIPLDPLSKAKTAFTIPGRPLYHYKVMPFGLCNAPQTMTR
FT                 LMDKVIPASLRNEVFVYLDDLLVISDTFDKHLEVLETVAKRIREANLTLNV
FT                 EKSKFCRRTVKYLGHIIGEGGIRTDPDKVSAITNFPLPTSLKALRSFLGLA
FT                 GWYRKFINNFASVSAPLTDLLQNKRKFVMTQEGKEAFEKLKAMLGSAPVLQ
FT                 TPDFERPFFIHCDASKTGVGGVLVQKSISGDELPIAFVSKKLNKAQRNYTV
FT                 TEQECLAALVSIKKFRAYVEGLEFTVITDHASLKWLMSQNDLNTRLARWAL
FT                 KLQGFRFAIQHRKGTLNVVPDALSRVEHEQIAAIDFKNGLLVDIDSEHFKS
FT                 AEYIQLMEGIKSNLDNFPDLRIVDALVYRRTEHSKGELLNDAYAWKLWIPK
FT                 SMIQEVLKKSHDDPLASHGGVHKTLERIRRYYFWPGMVNDVKDYIAACESC
FT                 RMTKAPNRALRPPMGKAVESQRFFQRLYIDFLGPYPRSRSGNIGIFIVLDH
FT                 YSKFVFLRAVKKLTAEVVLKYLEEDLFHTFGFPESIVSDNGSQFRSEKFQG
FT                 MLRSHRITHTLTAVHAPQANASERVNRSVIAGIRAYIRSDQKDWDENLSKI
FT                 SCALRSATHSGLGSTPYYMVFGQQMITSGATYSLLRKLAMLEDKAANFSRE
FT                 DSLEVIRKKAAETLGKQHERNERHYNLRAREVSYKVGQEVYRRNFKQSCFQ
FT                 AGYNAKLAPLFVKARVRRKIGDSIYELEDLNGKLVGRYHGKDIRQA"
XX
SQ   Sequence 5739 BP; 1769 A; 1037 C; 1355 G; 1578 T; 0 other;
     gtaatgaatc ataattatga aggaataatt attattttgg cgcccaatcg tgaagctaga        60
     ttttttttgg aaaagtttta aagaatatta agtctaggaa actcactaaa atttagaccg       120
     taactgtttc ttgctataat caaaatttaa ctaactttaa tttctcctca acgactaaat       180
     tgggtcagtt gtcaaaagtt aggtggggga gacatcacct tacttagcgg catctatcta       240
     gtttcttgca cgtccttttg tcatttttgg ttcctggatc gtcatttgga aaacaggatg       300
     atcagcctaa ggcagatatc ctgtccagtg acatgtgggt tcaaaagtga cgactggagg       360
     agaaaaagta gagggctaac tgagacatag gattgggatt cagttgctaa gctgctagca       420
     gctggctact gaccacttag tctcagtaat agctccccat ttctttgttt atttttcttt       480
     tcctcttttc ataactaatc tttggttatt cttgaagagc tatataagac gcttggaatg       540
     cacgttgact ttacttcaaa gtagaccacg gataaaagct ctgttgaaaa ccaattcttt       600
     aggtataaac gagcgattga tttgcatgga gaacatgagg agtcatatta cacatatgtt       660
     ttcatgtcca caaatcattg tttgttttca gtctactttc ttattttatt tacatttttg       720
     tgaagacggt cgatagctgg cagcgtttca gagtgcgtag gttgaaggaa atcaaaatta       780
     cgtttaaatt acaagtatca aaaattttaa tcatattcaa ctcatattat tttatatatt       840
     tatttaatta attattattt attatattta tttacctcat attattattt acccttttag       900
     tattacctta ttcatttttg gtagaagttg gaatttaaaa ataagtaaac gtagacatta       960
     atgggtctag atcgatcgcc tcaaaaagag ggacatcctc ctagttctga gtgtaaattg      1020
     tgtaactctg agatcagggc agctgatagc tataaaacca agtgtcagca tgtatttcat      1080
     aaagcgtgct ttaggacaca tttagcagtc aaaagaactt gtccgatttg tgagtcaatt      1140
     tgtatcgatc aacgtatttc acagcctccg acttcagcaa ttcaaactag gcagcgtaca      1200
     aggctagaaa caatttcgcg tagtggaagc gagttggact tgacagcttc taccagtcag      1260
     gagcggtcta ggcaggatca gattacagtc tgtaatacac cagtagaaga aatgagtcaa      1320
     atcacaacag aaatttctgc agccgtaaag gcaatgcaaa acgagctact aactcagctc      1380
     actgagagga tggccaacct aatacagaca aatgttgaag tgcaaatgag caatatagac      1440
     cagcaaagag ccacggtaaa tcctaataca agtaggaatt cctccctaga gcaggttttg      1500
     ggaattaata tgccacccac agagcagtat tcagttccac agagaccctc tagctccaga      1560
     tccctaaact cggatttagc acagagaccc gacaaagtgg ggcatatatt atcaaactgg      1620
     aaattaaggt tttcgggatc gtcagatact ataggagtag atagttttat ctacagagtc      1680
     gaggctctga cacaccagac attagaggga aatttctcac tcttatgcgg aaatgcgaac      1740
     atgctattcg aaggaaaggc ctcagatttc ttttggcgtc atcataaggc tgttggagtg      1800
     gtgcgatggc aagagctttg tgcagcctta aggaagcaat tcagggattc aagaacagat      1860
     gtagatatcc gtcaaatgat aagggacaga aagcagagag ataaggaatc atttgaaagc      1920
     ttttatgatt ccattttaaa gcttactgac cgacttagcc agcccatatc tgaagaaaca      1980
     ctagtggaaa tagtacggcg aaatttacgt ccagaaatac agcacgagat tctgaattta      2040
     agcttcgagt ccatggagaa tttaagggat acggttagaa aaagggaatt atttatagaa      2100
     gagatgcgca aacatcacgg gtaccaaaaa ccacttccct taagaaaacc gatcagtgaa      2160
     ctttgcgagg aggtggaagc cgacgatgcc gaagaatttg gggaagaaga acttcaagaa      2220
     gaaataagtg cctttgcttt ggtctgttgg aactgtagaa aggaagggca tagataccaa      2280
     gattgcgcct caaaaaggaa aatcttttgt tatggttgtg ggcttccaaa tgcttataaa      2340
     ccctcttgtg aaagatgcac aaaaaactcc cgcaggaaca ctgcaacacc gcgttccaaa      2400
     gcaagtgttc ccaaccgaca gacaggcttg gaggaccagc agtagttagt gggggtggag      2460
     cgcttagggt agaaaattcc ccttccggag atgcgggatt gcaagtctgg catactaagc      2520
     tggaaaagtt ccgaagatta cacctgccaa tgctgaagaa cgagggcaga tctgtctcgc      2580
     gaaatagtcg gcgtcaaaaa aattactgga ggacaataaa agaaattgct agtattagga      2640
     aaaatgttgg cgacaatagg ccttatgcag aggttacgtt gctagaaaag aaaagaagag      2700
     ggttgttaga tacaggcgct gctatatcgt gtataggtgg gcagctggct gaggagtata      2760
     tatgcagtag aaagcctttt aaaaaggttt tagctggtgc atgtactgcc gatggaaaca      2820
     agcaacaaat aataggtaaa tttaagacag agatagaata taaaggaatt aaaagggaat      2880
     tagaatttca tataatcccc tctctaaggc aagatattta tttaggaata gatttttgga      2940
     cagcttatga gctgttgccg ccaaccctag ctatctccga gatctcagga gatgcggaac      3000
     agcactcgat atcaagatgg cagcaactta aattagaaaa agttattaaa agctttccat      3060
     cttttgcgat atcgggactg ggtaggacct ccgttttaag ccatgcaata gacacggggt      3120
     cagcgaagcc cattaagcaa cggcatttcc cagtatcgcc ggccattgaa aaattgctat      3180
     atgccgaggt agataggatg ctaaaacttg gggttattga ggagtccgac agtccgtggt      3240
     cttcgccagt agtactggtc caaaagccag gcaaagtaag agtatgtctc gatagcagaa      3300
     aggttaacgc agtgacggaa aaggatgcat atccgcttcc tcagatcgat ggcatactta      3360
     gccggttacc taaggcaaat tttataagta gccttgactt aaaagacgcg ttttggcaaa      3420
     tccctttgga tcctctatcg aaagcgaaaa ctgcattcac tataccaggg aggcctttgt      3480
     atcattataa agttatgcct tttggcctct gcaacgctcc acaaaccatg acgaggttaa      3540
     tggacaaggt aataccggca tcactcagaa acgaagtttt tgtatacctg gacgatttat      3600
     tggttatctc cgatacgttt gataagcatt tggaagtttt ggagactgta gcgaaacgga      3660
     tccgagaagc taacttaacc ttgaatgtgg agaagagcaa gttctgtagg agaaccgtaa      3720
     aatatttggg ccacataata ggtgagggtg gtattcgaac ggaccctgac aaagtctcgg      3780
     ccattacaaa ttttccgtta ccaacatcac tcaaggcgtt aagaagcttt ttgggattag      3840
     ccggttggta caggaaattt ataaacaatt ttgcgtcagt atcggctcct ttgaccgatc      3900
     ttttacaaaa caaacgtaaa tttgtgatga cccaagaagg taaagaggca tttgagaagt      3960
     tgaaggctat gttaggaagt gcgccggtat tacagacccc agactttgag agaccctttt      4020
     tcatacattg tgatgctagt aagactggag taggaggggt cctagtgcag aagtctatta      4080
     gtggggacga attacctata gcctttgtat ctaagaaatt gaataaagcg caaaggaatt      4140
     acacagttac agaacaggag tgccttgcgg ctttagtaag cattaaaaaa ttccgagctt      4200
     atgtcgaagg acttgaattt accgtcatca cggatcacgc gtccttgaag tggctgatgt      4260
     cgcagaatga tctaaatact agattggcac ggtgggcttt aaagttacaa gggtttcgat      4320
     ttgcaatcca gcatcgtaag ggcacgctaa atgttgttcc tgatgctttg tctagagttg      4380
     agcatgaaca gatagcggca atagatttta agaacgggtt gctggtggat atcgactcag      4440
     aacattttaa gtccgctgag tatatacagt taatggaggg aattaaaagt aatttggata      4500
     actttccgga tctgagaatc gtggatgcct tggtatatcg acgcaccgaa cattcgaaag      4560
     gcgaactgct caatgatgcg tatgcgtgga aattgtggat accgaagtct atgattcagg      4620
     aggtgctaaa gaaatcgcat gacgatccat tagcgtctca cgggggtgtt cataaaacgt      4680
     tggagagaat tcgacgatat tatttctggc caggaatggt gaatgacgtg aaggactaca      4740
     ttgcagcctg tgaaagttgt aggatgacta aagcaccgaa tagggcgttg aggccaccga      4800
     tgggaaaggc agtcgagtcg cagaggtttt tccagcgtct ctacattgat tttttaggcc      4860
     cttatcctag gtctcgtagt gggaatatag gcatttttat tgtgcttgac cattattcca      4920
     aattcgtttt tcttagagcc gtgaagaaac ttacagcgga ggttgtacta aagtatttag      4980
     aagaggatct ttttcacacc tttggttttc ctgagagcat tgtttccgat aatgggtcgc      5040
     agtttagatc cgagaaattt caaggtatgc ttaggagtca tcgtatcacg cacactttaa      5100
     ctgcggtgca cgctcctcag gctaatgctt cggagcgggt aaatcgctct gtgattgctg      5160
     gcattcgtgc ttatattcgt agcgaccaaa aggactggga tgaaaatctt agtaaaatca      5220
     gctgtgcgct gaggtctgca actcattccg gtctgggatc cacaccttac tatatggttt      5280
     ttggacagca gatgattaca tctggggcaa catactcctt attgaggaag ttggctatgc      5340
     tagaggacaa agcagctaat tttagccgtg aggactctct agaagtaatc aggaagaaag      5400
     cagctgaaac attgggaaaa cagcatgaga ggaatgaacg acattacaac cttagggcgc      5460
     gagaagtatc ttacaaggtt ggccaggaag tatatcggag gaattttaaa cagagctgtt      5520
     tccaagcagg ttacaatgct aagctggctc ccttatttgt aaaggctaga gtgagaagga      5580
     aaatagggga ctcaatttac gaactagagg atttgaatgg aaagcttgtc ggtcggtacc      5640
     atggcaaaga tattcgtcag gcttagctac aagcgatcag ccttgtgggt tgagaagttt      5700
     aaatgcaacc ccaagtctga ttttggtcgg gggggattt                             5739
//
ID   Gypsy-9_DAn-LTR repbase;    DNA;    INV; 2092 BP.
XX
AC   AAPP01018802;
XX
DT   25-OCT-2011 (Rel. 17.03, Created)
DT   25-OCT-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit flies: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DAn_;
KW   Gypsy-9_DAn-LTR; Gypsy-9_DAn-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2092
RA   Jurka J.;
RT   "LTR retrotransposons from fruit flies.";
RL   Direct Submission to RU (25-OCT-2011).
XX
DR   Genome; AAPP01018802; Positions  392065  389974.
XX
SQ   Sequence 2092 BP; 633 A; 372 C; 483 G; 604 T; 0 other;
     tgtaataggc ttgtagcaac tagttttgcc taggaggttt gggagcgact gattgtcaaa        60
     ctttctagcg aaacgggcag gtttttagtg gcagcgctgc tccccagcga gagaaatggg       120
     tggagaaatt taggaccggg taaactaggt aaaatcttcc gaatagcggg cacggggttc       180
     ctcgtagctc gcggctggaa gccctttctt ttccatccgg acctcatcca gaaaggtagc       240
     ttaaaacccc agaagaaaag tgaaataaaa ggtctttgtg taaaggcatt tgtgtaaaga       300
     aaagttaaaa gcgtttgcct aagaaaagtg tgaactatta aactagtgcg aatcaataat       360
     aatttctgtg gttggcgcag agtcgagagg taagcgtgcg ggggaggaat tagctattat       420
     aagagaggag gttttaacgc cgcgtacttt gcttaggttg gagctcccta agtcaggaac       480
     cctagacgaa gaagcaaagc ttcgggactg gagcagttcg cgttctcaag cccacggagt       540
     cggcgtgatt ccggaattat cgtggtccct ggtgcggggg ctcgtcgcga aatcttctaa       600
     ttggcgaacc gtcccagtcg gcgactttta caccttccgc tgattacgcg aggggaaagg       660
     aaaagagaaa aaaaaaccta aattcggcgt gatttgtagt gcttaagtgt agtttaagta       720
     gttaatattg tgaattcata attattatta attattaata ttgtgcctaa gtcatgcagt       780
     tttaaatagg ctcaaaaaaa gtaaccgctg ccaaaaagcc cctctcccta tgctcgtcaa       840
     agccccaaac gcaacgaaaa agaaactaaa gaaaagctcc aatcgtctca tatgacactc       900
     cgagactaga tgtaggagta agggagacag acgaaggtgc aagggagccg ttgcggtttc       960
     gccaaaaagc gagaaggcga gaacacgcgg tgcatcccag tggagagtga gggatagagc      1020
     atagctcccc aatggtccac tggggtcatt gaactttggt agagcggaga gtgagagagt      1080
     aatatcaggg tgttgaacag ctgagttgag cttaggataa gtgattttgt tattgtaaac      1140
     tagtaaagta atattttgaa tttagggatt aattttaatt atggtaaagt aaggaaaaag      1200
     tgaaaaagcg gcaaaagtcc ctaattcggg aaaaaaccca tattatgtgc tgatcgaatt      1260
     ctagaattat tattattatt tttggtgtgc gatgatcatt tttattcaca gcgcagcagc      1320
     cttagaaagc tttcgacggt ggatggcgta ataaaaagag tgagtgagat ttttcatcta      1380
     taattataaa agtgtcagat aatgataata atgataatga gagccatatt aaattgaagt      1440
     aacttttttt tattactctt aattaatttt tgctaagcga ccacgcttta ccatggttag      1500
     caattgaacc ctaggattaa tatatttttt ttgagataat ttttttcgaa ttcctttctt      1560
     ttaatttaaa tatttttatt attttattaa tctgtagttt aattatgcac atgaaattta      1620
     taacctccaa tactatatca agtccatttt agcggtaata aataatttta taatgtttgt      1680
     ttaaaaacaa aattttttga tttcgtaaac ccgcctcagt agcgcttgcc gaagaaggga      1740
     tcatgggaaa accggtattt aggagaagca tgatcacggt agggagggcg acactagctc      1800
     ctattacatc aaggagcgat ccgaccaact ttgcaaattt gtgtcttcct gtttttttct      1860
     gttctttgtt ggtagtttgt cacagttcac agtctagctc gtccggtagc ttatctcgtc      1920
     attattagta cgcacgtttc ttaaattaaa taattttcat tcctgacaag gcaccccttt      1980
     attttggcca aaaccccaaa caccacgcca ccgacgagcc agagccggaa cagttaacgt      2040
     gcgggtcaaa tcggggaaat atcatccagc cgggtattcg ttacacgtta ca              2092
//
ID   Gypsy-9_DAzt-I repbase;    DNA;    INV; 4830 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DAzt-I.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4830
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 763-763 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           54..1019
FT                 /product="Gypsy-9_DAzt-I_1p"
FT                 /translation="MPRRGGRQRARSVIPEPATVTTASLTQMLTDTQNQMD
FT                 LKIEKMFDSFQRTMLRVLETSPRNQTGGDTHHPETLARPPAPWANAANARE
FT                 TGATVYLESPQAASTLRPSSGRGSAFQPGTLPSYDGSTSWSDFERILEMVA
FT                 ENQQWSDAERCLGIALNVQGQAQKFFSTLPTSTTRSYHLLMSSMRTQFDLD
FT                 CQASYQQLRNRAQKPKESLMDFSIELERLGRVVFAGTPEDTYNSIMVQQFV
FT                 DGMRETALQYPVLASKPSTLSEAREMAIKLQNLGARNSGRPIFYVADAPSG
FT                 QGSTATPRHRGRGAAARPAHQPREEAASGN"
FT   CDS           1022..4792
FT                 /product="Gypsy-9_DAzt-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="MPVSSAGRELTAAHKAPNQNKDDQTPLRRPAVTANAE
FT                 GNEPKREVILPISALVAPIGPPSPESAPSTNKNSAEARTDGEPASIFRKPA
FT                 LTPEDKTEDGRRVRRAHRGNPSDEPPATYSIDTLRDKSLHCVLLFQERPVR
FT                 MVVDTGASVSLLNKRDVREALQTTPCQVVLRGPTSETFAATQRVSATVRIG
FT                 NRSVLQDFLLVDGAPPSLLGVDFLLRHGATVDLRALQLKFAWGTVPLHLAG
FT                 SMRENALYLAETACIPPRNNAQFSSRCTPETAQQQEIEDLRSGMATGSPIE
FT                 DCTNSSLTVQIVNCNDQEWSLPPLTVLGELEAADEVCRPADAREGPIDWNS
FT                 LLNYVEPEARAPLEKMLHRYRKAFAKNDDETGRTNLTHHFIDTGQSRPLKQ
FT                 PPRRLALSKKEEVERLLAEMRANGVVRPSNSPWASPVVLVQKKDGSTRFCV
FT                 DYRRLNDVTVKDSYPLPRPEDVLATLHGSNWFSTMDLQSGYWQVEMDELSR
FT                 PKTAFACGAGLFEFNVMPFGLTNASATFERLMDGLFAGPTWRSTLVYLDDI
FT                 IVHSRTAEEHLEHLERVLERLISAGLRLSPKKCHFFKSEVNFLGHVVGSQG
FT                 LRTCPSKIAKVTDWPRPQSQKDVRSFVGLCSYYRKFIPDFSTIAKPLHELT
FT                 EARRTFAWTAETERSFDMLKIKLTTAPILAFPKPSDLFVLDTDASDHGVGA
FT                 VLSQIQNGQEVVIEYYSKTFSPAERNYCVTRRELLAVVRSTKHFHHYLYGQ
FT                 KFVVRTDHASLKWLLTFREPEGQVARWIERLQQYNMDIQHRPGKRHGNADG
FT                 LSRRPCGNCRVCEKAEEKAGRVLYLGVVPEPLDEHQKKDPDLAVVHKWVAQ
FT                 GERPPKSSILGESPDVKAYWHLFSRLQLKNRVLTVTTRDAGQLPVIPRAVQ
FT                 PEILQSVHQSPTGGHFGVKKTLAKAKQRFYWIGLSADIAIFCARCLKCQAR
FT                 NGPTRRTVGKLQPSAIGAPFERIAIDILGPLPTTARGNRYIAVVMCYFTKW
FT                 PECLALPDQTAETVARALTEEVFCRYGVPFVLHSDQGRNFESEVFRACLRL
FT                 MDVEKTRTTPLHPQSDGMVERFNRTLLGYLAKFVADDQRNWDERLPWALWA
FT                 YRAAPHEATGLSPAKLTFGREIRLPCELLYGQPTPVVETYPAFVDKLKSHL
FT                 QDTHRTAREHLKAAAEQQKIRYDLRSHVVQFEPGDLVWLYTPVRKVGRCPK
FT                 LQSDWIGPATVIRNHSDLVYEIRLPGKRTTRTIHVNRLAAYKGPVSE"
XX
SQ   Sequence 4830 BP; 1162 A; 1404 C; 1337 G; 927 T; 0 other;
     ttggtgtcag gtgtggggtc tgcgatcaga ttctggaaag atctcaagcc ataatgccaa        60
     gacgaggagg aagacaacgc gcccgttccg tgatcccgga gcccgctaca gtgaccacgg       120
     cttcattgac gcaaatgttg accgacaccc agaaccagat ggatctgaag atcgagaaga       180
     tgttcgactc gttccagcga acgatgctac gcgtactgga aacttccccc cgcaatcaaa       240
     cgggagggga cacccatcac ccagaaacat tggccagacc tcccgcacca tgggcgaatg       300
     cagcaaatgc aagggaaacc ggcgcgactg tgtacctcga gagtccgcaa gccgcttcca       360
     ccctgcgacc atcaagcggc cgagggtctg cctttcagcc tgggacgctg ccttcgtacg       420
     acggctcaac atcttggtcc gatttcgagc gcattttgga aatggtggcg gaaaaccagc       480
     agtggagcga cgctgagcgg tgcctgggga tagcactcaa cgtacagggt caagcccaga       540
     agttcttcag caccctgcca acgagcacaa ctcgcagcta tcacctgctg atgtcatcaa       600
     tgcgaacaca gtttgaccta gactgccagg caagctacca acagttgcgc aaccgcgcgc       660
     agaaacccaa ggagtccctc atggattttt ccatagagtt ggaacgcctg ggccgtgtgg       720
     tttttgctgg tactccggag gacacctata actccataat ggtgcagcag ttcgtggacg       780
     gcatgcgtga aaccgcgctg cagtatcccg tgctggccag caagccctcg acgctctccg       840
     aagcccggga aatggccatt aagctccaga acctgggggc gcgtaactcc ggccgaccca       900
     tcttttatgt ggccgacgcc cctagtggcc aaggatcaac cgccacacct cgccatcggg       960
     gtcggggggc tgcagcccgc ccggcgcacc agccgcggga agaagccgcc tcgggaaact      1020
     aatgccagtc agctccgcgg ggcgagagtt gactgccgca cataaagccc ccaaccaaaa      1080
     caaggacgac cagactccgc tgcggcggcc tgcagtgacc gccaacgccg aaggaaacga      1140
     gccaaaacgg gaagtaatac tgcccatttc ggcgctcgtc gcccctattg gacctccctc      1200
     gccggagtct gcaccgtcga caaacaagaa cagcgccgag gccaggacgg atggagaacc      1260
     agcgtcgatc ttcagaaagc cggctctcac acctgaggac aaaacggaag acggccgccg      1320
     agtcaggcgt gcccaccgcg ggaaccccag cgatgaaccg ccagctacgt actccatcga      1380
     cacactgcgt gacaaaagct tacattgtgt acttctcttt caggaacgcc cggtgcggat      1440
     ggtagtagat acgggtgcct ccgtgtccct gctcaacaag cgggacgtaa gggaagcact      1500
     gcaaaccacc ccttgtcagg tggtgttgcg cggaccgaca tccgagacct ttgccgcaac      1560
     tcaacgcgtc tctgcaaccg ttcggatcgg caaccgctcg gtgctgcaag acttcctgct      1620
     cgtggacggt gcccctccca gtctcctagg agtcgacttt ctcctccggc atggagccac      1680
     ggtggacctt cgggctctgc agctcaagtt cgcctggggt acggtgccat tacaccttgc      1740
     aggttccatg cgagagaacg cgctctattt ggcggagaca gcatgtatac cgcctcggaa      1800
     caacgcacag tttagctcaa ggtgtacacc ggagacggcg cagcagcaag agatagagga      1860
     cctacgctcg ggcatggcca cgggtagccc catcgaagac tgtaccaaca gcagcctgac      1920
     ggtacaaatt gttaattgca acgaccaaga atggagcttg ccaccactta ctgtgttggg      1980
     cgagctggaa gcggcagatg aagtgtgcag gccagcggat gcgagggagg gccccataga      2040
     ttggaactcc ctgctaaatt acgtcgagcc cgaagcacgg gcgccgctcg agaagatgct      2100
     ccatcgttat cgcaaggcct ttgccaaaaa cgacgacgaa acgggcagaa ccaacctaac      2160
     gcaccatttc atagacacgg gtcagtcccg accccttaag cagccacccc gacggttggc      2220
     gctatcgaaa aaggaagaag tggagcgcct gctagcggag atgcgcgcaa acggagtggt      2280
     acgcccctcc aacagcccct gggcctcgcc ggttgtgtta gtccaaaaga aggacggatc      2340
     gaccaggttc tgtgtggact atcggcggct caatgacgtc actgttaagg actcataccc      2400
     cttgccgaga ccagaggatg tcctggctac ccttcacggc tccaattggt tctctacaat      2460
     ggatttgcag agcggctact ggcaggtgga gatggacgag ctctctaggc ccaagactgc      2520
     cttcgcttgt ggggctggat tgttcgagtt taacgtaatg ccattcgggt tgactaacgc      2580
     ctcggcaacg ttcgagaggc ttatggacgg attgtttgcg ggcccaacct ggaggtcgac      2640
     gctggtatat ttagatgaca ttatcgttca ttcccgtacg gcggaagagc acctagagca      2700
     tttggaaagg gttctcgaac ggctaatatc agcgggatta aggctgagtc cgaagaagtg      2760
     ccactttttc aaaagcgagg tgaattttct gggacacgtc gtgggtagtc aaggcttgcg      2820
     gacttgcccg tcgaagatag ctaaggtcac tgattggccc cgacctcaga gccaaaagga      2880
     cgtacgctca ttcgtcggtc tctgctctta ctaccgtaaa ttcatccccg acttctcgac      2940
     gatcgccaaa ccgctccacg agttgacaga ggctcgtcgt accttcgctt ggactgctga      3000
     aacggaacgg tctttcgaca tgctgaagat taagttgacg acggccccga ttctagcctt      3060
     tcccaagcca agcgaccttt tcgtgttgga caccgacgct tcggaccatg gagtgggcgc      3120
     cgtgctaagt cagatccaga acggtcaaga agtagtcatc gaatattata gcaagacttt      3180
     cagcccggca gaacgcaatt attgcgtaac ccgaagagaa ctactggcag tagtccggtc      3240
     caccaaacac ttccaccatt atttgtacgg ccagaaattt gttgtgcgta cggatcacgc      3300
     ctcgcttaag tggcttctta ctttccggga gccggaagga caagtcgcaa gatggatcga      3360
     gaggctgcag cagtacaata tggatattca gcaccgccct gggaaacgcc acggtaatgc      3420
     ggacgggcta tctcgccgac cctgcggcaa ttgtcgcgta tgcgagaaag cggaagagaa      3480
     ggctggccgt gttctttact taggagtagt gccagagccc ttagacgagc accagaagaa      3540
     agatcctgac ctagcagtag tccacaaatg ggttgcacaa ggagagagac cgccgaagag      3600
     ttcaattttg ggtgagagcc ccgacgtgaa agcttactgg catctatttt ctcgtttgca      3660
     gttgaaaaat cgagtgctca cggtcaccac ccgagatgcc ggtcagctgc ctgtcattcc      3720
     gcgtgcagtg cagccggaaa ttctacagag cgtccaccag tcacccacgg gaggccactt      3780
     cggcgtgaag aaaactttgg ctaaggccaa gcaacgtttc tattggatcg gccttagcgc      3840
     cgatatagcc atattctgcg cccgctgttt gaagtgtcag gcacgaaacg gaccgaccag      3900
     acgaacggtc ggcaagctcc aacctagcgc aatcggtgcc ccgttcgaaa ggatcgccat      3960
     cgacatactg ggccccttgc ccaccaccgc ccggggcaac cgctacatag ctgtcgtcat      4020
     gtgctacttt acaaagtggc cagaatgctt ggcactgccg gaccaaacgg ctgaaactgt      4080
     ggcacgcgcc ttaacggagg aggtgttttg ccgatatggc gtgccattcg tcctgcactc      4140
     ggaccaagga cggaactttg agtcggaagt tttccgagcc tgcctacgac taatggacgt      4200
     cgagaagaca cggaccaccc cgcttcaccc tcaatctgac ggaatggtcg aacgtttcaa      4260
     ccgcacgctg ctcggctacc tggccaagtt cgtagccgac gatcagcgga attgggacga      4320
     gcgattgccg tgggcattgt gggcttatcg agccgcccct catgaggcca ccgggctctc      4380
     tccggcgaaa ttaaccttcg ggagggagat ccgcttgcct tgcgagctgc tgtatggcca      4440
     gccaacaccc gtcgtggaaa cctacccggc cttcgtggat aagctaaaat ctcacttgca      4500
     agatacgcat cgtaccgcaa gggaacacct gaaggccgca gcagaacagc aaaagatccg      4560
     atatgatctt cgctcccatg tcgtacaatt cgaaccaggc gatctcgtat ggctatacac      4620
     tcccgtcaga aaagtaggac gatgcccaaa actccaatcg gactggatag gaccggccac      4680
     ggtgattcgc aatcattccg acctagtcta cgaaatacgt cttcccggaa agcgcaccac      4740
     caggacgata cacgtcaacc gcctcgctgc ctacaaagga ccagtctccg aataagtcgg      4800
     ccaggagact cgactctaag aggggggcaa                                       4830
//
ID   Gypsy-9_DAzt-LTR repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila azteca genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DAzt-LTR.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-360
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 813-813 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 4-bp TSDs, often ATAT.
XX
SQ   Sequence 360 BP; 119 A; 77 C; 91 G; 73 T; 0 other;
     tgtaacgaaa attcgaattt ggcgccctta gagccctgga ccaggcttat cgatagttgg        60
     agtccacctc gatcggctgg actttggacg ggagggagaa agaaaagggg gagacggaga       120
     agcaaaaaaa aaaaagagaa gagcattgat tttagagcaa aaaaaattgt aacaacgtgc       180
     ctagagaggt taagttttgc aataaatcga aaaagtggta ataaaaacgt ggtagagtgc       240
     attaatcacg acggcatcac agctgctgcc tccccttagc ggccgcctta ccaattggtc       300
     cccttcccca acctgaaaag gaaatccgct cggcccgccg gtagcaaaaa tcttgttaca       360
//
ID   Gypsy-9_DBi-I repbase;    DNA;    INV; 5628 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DBi_;
KW   Gypsy-9_DBi-LTR; Gypsy-9_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5628
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 837-837 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3570-4046] - Integrase core
CC   LTRs are 95% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           70..1371
FT                 /product="Gypsy-9_DBi-I_1p"
FT                 /translation="MGKKWIYRLKKEDFAQVAQRLNVALDGRLEDMRRTLS
FT                 EYYSETENDPQLADIWAELEAMYYDRTGPSITLTNAEGDNLVASLSVDNLQ
FT                 REAHRRESSQDRKTTVLTSRHSQADYARVAKQVREWSFRFDGAEKPFEFLE
FT                 QVEWSANTYGLDLDMIPRAMPELLKGRALKWFIANNKQWKTWAEFIESFHL
FT                 YFLPRDFFTRLSDQVRQRKQGFSESFKDYMIDMQTMSRPLNYSARDTLKII
FT                 KENCTPSLRIFLRAYKVPDLDTLMLLADEYEELEKEREAFAQENKFSKAKS
FT                 SPPTQVTCRRCEETDSQETRRNDQFSPPQRVPRQQATGAPRGGQWTPPQQQ
FT                 QIQPANTVWRPPNTTQRPRGTTHIADPHEACRRCGGHGHWARGCRLQRLLF
FT                 CWVCGRVGVRSVECCQQAGNAQRPQPQRGERGSQDATSPN"
FT   CDS           1227..4475
FT                 /product="Gypsy-9_DBi-I_2p"
FT                 /translation="MSTPTPVVLLGVRESRCQERRVLPAGGKCPATSAAER
FT                 RAGVARCYLSKLTGKLIEEEQQLSAAVTIGGGTYKATIDTGATASFISKEL
FT                 ADNLAALGRITRTRRQVRLADGRCGGIDEQLEVEIAFGNKRLTMSLLILPG
FT                 VVDSLVLGWNFLTQVGTEIRCAGHEVRIPARNRHNGWLEERLSVAVVQQET
FT                 EYDDTAKFLEAELASFKTMTGTSNMAEHQITMKDDKPIKQRYYPKNPKVQG
FT                 EINAKVDELLQMGCIEHSTSPYSSPIVMVRKKTGKWRLCVDFRQINAKSIK
FT                 DAYPMPRINYILDQLREARYISSLDLKDGYWQIPLKESSRQYTAFTVPGKG
FT                 LFQWRVMPFGLHSASATFQRVLDRVIGPEMSPHAFAYQDDIIVIGRTLEEH
FT                 KANLKEVFRRLKDANLRLNPEKCQFFKKELLYLGHRVTSDGIGTDPEKVAA
FT                 IAELEPPSTVRELRQYLGVASWYRRFVPDFAKIVKPLNDLLRKGNKWVWTQ
FT                 EHQSAFEEVKARLVADPVLACPDFEKPFVLQTDASDYGIGAILTQETERGE
FT                 KVISYSSRTLNGAEKNYSTTEKECLAIVWAIRKLKPYLEGYHFKVVTDHMA
FT                 LKWLNSIESPSGRIARWALELQQYDFEIAYRKGQLNVVADALSRQPLPVTL
FT                 RGIKETSAAEASAACSWIQDMRGKIRTQPQKYPDYVMEGDTLYRNIPHRAG
FT                 SEDVATWKMCVPKALREAVLKENHDSPAAGHVGSRRTIARLAARYYWPGMH
FT                 RDARAHVRGCETCIRFKPNQMQAAGKMLTQVPEEPWATVCADFVGPLPRSK
FT                 HGNQMLLVLIDRFSKWTELVPLRSATAESLKKAFRERIIARFGVPKVVITD
FT                 NGVQFNSKIFKSFLAEMGAKQQFTAPYTPQENPTERANRTVKTMIAQFTGQ
FT                 DQRNWDEKWPEIMLAVNTSVSESTGYTPAFITQGREPRLPSALYDRETLGT
FT                 GRPTETPGEKANKLGEIFEIVRRNLERASQDQARHYNLRRRQWTPAVGDVV
FT                 WAKEHHLSKAAEGFAAKLAPRYDGPYQVTDFASPVICKIRHVNTKKERTIH
FT                 VSELKQQQTQNTSEQPQADTVDKRQQ"
XX
SQ   Sequence 5628 BP; 1715 A; 1314 C; 1685 G; 912 T; 2 other;
     aagaaatcag ttcgttacat ctggcgccca aaacgtgatt gtcccagcgg tgaaagcaaa        60
     ataaacagaa tgggaaagaa gtggatttac cgccttaaga aggaggactt cgcccaggtc       120
     gcacaaaggc ttaatgtcgc cctggacggc agattagagg acatgaggag gacattgtcg       180
     gagtattact ccgagacaga gaacgaccca caacttgccg acatctgggc tgagctggaa       240
     gccatgtatt acgacagaac cggcccgagt atcacgctaa ctaacgctga aggggataac       300
     ctagtagcaa gcttgagcgt cgacaacttg caaagggagg ctcacaggag agagtcaagc       360
     caggacagga agacaacggt gctgacctct agacacagcc aggcggatta tgcaagggtc       420
     gctaaacaag tccgcgagtg gtcattcagg ttcgacgggg cggagaaacc gttcgagttc       480
     ctggaacaag ttgaatggtc cgccaacacc tacggcttag acctagacat gatcccccga       540
     gcgatgccgg agttgctgaa aggaagggcg ttgaagtggt ttatcgccaa caataaacaa       600
     tggaaaacct gggcggagtt cattgagagc ttccatcttt actttctgcc gagagatttc       660
     tttacaaggc tgtcggatca ggtcaggcaa cgaaagcagg gtttcagtga gtcatttaaa       720
     gactacatga tcgacatgca gacgatgtcg aggccactaa actattctgc gagagacacc       780
     ttaaagatca taaaggaaaa ctgcacccca agcctaagga tcttcctaag ggcgtacaaa       840
     gtgccggacc tggacacgtt gatgctatta gccgatgaat acgaagaact ggaaaaggag       900
     cgggaagcgt tcgcccaaga aaacaagttc tcaaaggcaa agtcgtcacc accaacgcag       960
     gtcacgtgca gaagatgcga ggagacagat agccaggaga cacggagaaa tgaccaattt      1020
     tcaccgccgc aacgagtccc acgacagcag gcaacaggag caccacgagg aggccaatgg      1080
     acgccaccac agcagcaaca gatacaacca gcgaacacgg tgtggagacc gccaaacaca      1140
     acacagaggc cgcggggaac gacacacatc gcagatcccc atgaggcctg ccgaaggtgc      1200
     ggcggccacg gacactgggc acgaggatgt cgactccaac gcctgttgtt ctgctgggtg      1260
     tgcgggagag taggtgtcag gagcgtcgag tgctgccagc aggcgggaaa tgcccagcga      1320
     cctcagccgc agagaggcga gcgggggtcg caagatgcta cctctccaaa ctaacgggca      1380
     agctaatcga ggaggagcag cagttgtccg cagcggtgac gattggggga ggcacgtaca      1440
     aggccacgat cgacaccggg gcaacagcga gctttataag caaggaactg gcggacaacc      1500
     tggctgccct cgggaggatt acgaggacac ggcggcaagt taggttggca gacggaaggt      1560
     gcggcgggat cgatgaacag ctggaggtgg agatcgcatt cgggaacaag cgactaacca      1620
     tgagcctgct gatactacca ggggtagtgg attcattggt gttaggatgg aactttctaa      1680
     ctcaagtcgg aaccgagata aggtgcgctg gacacgaggt gagaataccg gccaggaacc      1740
     gacacaatgg gtggctcgag gagaggctat cggtagcagt cgtacaacag gaaacagagt      1800
     atgacgacac agcgaagttc ctggaggcag agctagccag tttcaaaacc atgacaggaa      1860
     cgtcgaacat ggcagagcat caaataacga tgaaggacga caaaccaata aaacagcgat      1920
     actacccsaa gaacccgaaa gttcaagggg agatcaatgc gaaggtggac gagctactcc      1980
     aaatgggatg catagagcac tcaaccagcc catacagctc tcccatcgtg atggttagga      2040
     agaagacggg caagtggaga ctgtgcgtcg acttcaggca gatcaacgcc aaatcgataa      2100
     aggatgccta cccgatgcct cgaataaatt atatcctcga ccagctgaga gaggcacggt      2160
     acataagcag cttggacctg aaggatggct actggcaaat cccgctgaaa gaaagcagca      2220
     ggcagtacac tgcatttaca gtgccgggaa agggcttatt ccagtggaga gtaatgccgt      2280
     ttggactcca ttcggcatct gcgaccttcc agcgggtgtt ggaccgggtg attggtcccg      2340
     agatgtcgcc gcacgcattt gcgtaccagg acgatatcat agtgatcgga cgcacactag      2400
     aagagcacaa ggcaaacttg aaagaggtat tccggcgact gaaagacgct aatctgagat      2460
     taaacccgga aaaatgccag tttttcaaga aggagctgct gtatttgggt catagagtga      2520
     ctagcgacgg gataggcacg gatccggaaa aggtagcagc catcgccgaa ttagagccgc      2580
     cgtcaacagt tagagagctc cgacagtacc tgggagtagc atcatggtat cggcgatttg      2640
     tacctgactt cgcaaaaata gtcaaaccgc tcaacgatct gctgcgcaag ggcaacaagt      2700
     gggtgtggac acaggaacat cagtcggcat tcgaagaggt aaaggcaagg ctggtggcag      2760
     accccgtact ggcgtgcccg gattttgaaa aaccatttgt cctgcaaacg gacgcaagtg      2820
     attacggtat tggggccatt ttgacccagg aaaccgaacg tggcgaaaag gtgatctctt      2880
     actcaagccg aacgcttaac ggggctgaga aaaactactc cacgaccgag aaggagtgtt      2940
     tggcaatagt ctgggcgatc cggaaactga agccatattt ggaagggtac cacttcaagg      3000
     tggtaaccga ccacatggcg ctgaagtggc tcaacagcat cgagagccct tcaggaagga      3060
     tcgccagatg ggccctggag ttgcagcagt atgacttcga aatagcgtac aggaagggac      3120
     aactcaatgt ggtggcagac gcattatcaa ggcagccact accagtaaca ctgcgaggga      3180
     tcaaggagac atcggcggcg gaagcctccg cagcatgcag ctggattcag gacatgcgcg      3240
     gaaagattag gacccagcca caaaagtacc cggactacgt aatggaggga gacaccttgt      3300
     acaggaacat tccacacaga gcaggcagtg aggatgtcgc gacgtggaag atgtgcgtcc      3360
     cgaaagctct gcgagaagcg gtgctgaaag agaaccacga ctcaccggca gctggccatg      3420
     taggaagcag aaggacaata gcacgtctgg cagcccggta ctactggcca ggcatgcacc      3480
     gagacgctcg agcccacgta agagggtgcg agacatgtat cagattcaag ccgaatcaga      3540
     tgcaggcagc tgggaaaatg ctaacgcagg tgccagagga accgtgggct acagtatgcg      3600
     cagacttcgt cggacccctg ccgcgttcaa aacacggcaa ccaaatgctg ctggtgctga      3660
     tagacaggtt ctccaagtgg actgaattgg tgccgctgcg gagcgcgacg gccgagtccc      3720
     taaagaaagc gttcagggag cgcatcatcg caaggtttgg ggtcccgaag gtagtcataa      3780
     cggacaacgg agtacagttc aacagcaaaa tcttcaagag tttcctggcc gagatgggag      3840
     ccaagcaaca gttcacggct ccatataccc cgcaagagaa cccgacagaa agagcaaaca      3900
     ggaccgtgaa gacgatgata gcgcagttca cagggcagga tcagagaaac tgggacgaga      3960
     aatggcctga gatcatgctg gcagtaaata cgagtgtttc ggaatccaca ggatacacgc      4020
     cggcgtttat tactcaaggc agagaaccga gactaccgag cgccctatac gacagagaga      4080
     ccttgggaac agggcgaccc actgagaccc caggggagaa ggcaaacaaa ctcggggaaa      4140
     tcttcgagat tgtaaggcgg aatctggaga gagcctccca ggatcaggct aggcattaca      4200
     acctaaggag gagacaatgg acaccagcgg tgggggacgt cgtgtgggcc aaggaacatc      4260
     atttgtcaaa ggcggccgag gggttcgcag caaagttggc cccaagatac gacggacctt      4320
     accaggtcac ggattttgcg tcaccagtaa tctgcaaaat acggcacgtg aacacaaaaa      4380
     aagagaggac catccacgtg agcgagctga aacaacaaca aacacagaac acaagcgagc      4440
     agccacaagc agatacggta gacaaaaggc aacagtaaag tttcaaagag tctcaaagga      4500
     cacgaggaaa agggtccaag gatagctcca aggatacccg aaggacacga ggaaaagggt      4560
     ccaaggatag ctccaaggat acccaaagga cacgaggaaa agggtccaag gatagctcca      4620
     aggatgccca aaggacacga ggaaaagagc ccgaggataa ttccaaggat gctcaggaat      4680
     gaggaaagag tccgaggata actccaagga ttctcaaagg atacgmagat aaaactcgaa      4740
     ggattctcta caaggcacta cgatacaatc atatacagta caaggaacac gtcaaggata      4800
     acgaatgcgg aaaggaacga accaaggtct acaaggattt gattgggact ggcagcagca      4860
     gtctgccgaa ggaaggggga agtcggcaca gctaagagag ctgtaccgaa agaggccaag      4920
     catcacggag aagggcatca tgcccagacg aggagacggg atcgcgggcc ggatcggggt      4980
     ccaaaccagg aagcacagct gctggagtct gaaagggcac tcgtggtcaa caaaggcaac      5040
     ctgccaagag aaaataagct gatgagcaca tacaaggagt cgggtgtgtg atcagaatac      5100
     ttacgtagtg gcaaggacaa gtggaaacgc cgggctgagg ggtagaaaaa aactaaactt      5160
     ctgccgaccg gtgcacgggc ataaacaatt tgcaaaatca ccattcaaca gggaaggggg      5220
     cgcctcgata ggcggtcgat tggcactgga cgatagtgcg atcgatgggc acaagaaaat      5280
     ggaaatatcg gtgatgatga acatcgcggc tcgcaagtgg caacgccgca cctgcgatat      5340
     cgatatcgtg agcaggccct ctgggtatcg atagctgatt aatatcggtg cccagtggga      5400
     acagatggag gatcggcgcg ggagatttga aattgctata cggaggacga ccggcgctgt      5460
     ggaaaggaaa caagatggaa agcgtcgagg gaacgtcgag ggagcaacga gggagcaccg      5520
     agggaaccgg aacgagatgc gccctgactc aatggctagg atatacaagg gaacgccgga      5580
     gagtgggagc gctgagtttt cttaatcttt cccgaagtaa ggggggaa                   5628
//
ID   Gypsy-9_DBi-LTR repbase;    DNA;    INV; 1920 BP.
XX
AC   .
XX
DT   10-DEC-2011 (Rel. 17.06, Created)
DT   06-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Drosophila biarmipes genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DBi_;
KW   Gypsy-9_DBi-LTR; Gypsy-9_DBi-I.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1920
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 838-838 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1920 BP; 538 A; 454 C; 644 G; 282 T; 2 other;
     tgtgaggagt tgaataactc cccacaaatc ccagcagcag atggccggcc gctcaccagg        60
     tacgcggcga attcgcgtag tggcggcgcg gcgaagagcg aggacggaga acgagagagt       120
     ttggagatcg aggacggaga acgagagagt ttggagatcg aggacggaga acgagagagt       180
     ttggagatcg aggacggaga acgtgagagt ttggagagga agagagtttg gagacaagag       240
     tttggagagc gagagagttt ggagaggaag agagtttgga gacaagagtt tggagagcga       300
     gagagtttgg agagcaagag ggttcggaga ccaagagagt ttggagacca acaatggaga       360
     aggagagagc ggagacttgg cgggcggagc gagagtgccg tgtgcaaaaa ggagtaacgg       420
     gacgccgccg gactttggac tttggaaaga aggtgccaca tctcagcagc ggtgcggcac       480
     acaaacatgc cgcatgcgtc tccgggatca gcgggacggc agcatcaggc tggacggcgg       540
     cgggaggcag tgcgtcaagg acaagagggt caaacaggaa ccatggactt tggacccgat       600
     gtggagagtt ttggcgggcc gtgtgcaaaa gggaaataac ggttcccaga ggccctatat       660
     aaacccgcag ggcgctggca gcgggatcag tcagtcgaga cgcagtcatt gagaagagtc       720
     agtcgagatc agtcattcag catcagtcat ccagtcgaga gcatcagtcg agagcgagca       780
     gtcagtcgag agcaaggagt cgtcggaagc agcgccgtgg gagcctacga ggagcaagat       840
     cgtcacgtcg agacgttcgg gattgggatt actaggaatc tccgaactga gacacaggtg       900
     gctgaggtct aaggaggcgc cacacggcta agttctgttc tgtcctgccg acgaagtcct       960
     ggcggtacgc ctggagggtc tactagactk agatttgaaa tcgagagtag caagccagaa      1020
     gggagagaag tcccggagcg gcgtaacaga acccctagag tagcgagcca gaagggagag      1080
     aagtcccgga gcggcgcaac ggaaccccta gagtagcgag ccagaaggga gagaagtccc      1140
     ggagcggcgc aacagaaccc ctagagtmgc gagccagaag ggagagaagt cccggatcgg      1200
     cgtataccct cgaacccagc acagaagtca agacctacag ccacctgtca ggagcagttc      1260
     gcaggacatc gccaccagca agcaggacac cacaccgcaa cggccacgca aggaggatcg      1320
     agcccgcagg aacggcacgg acagtacgcg gaagggtgag gctagggtgg aacgttcgtt      1380
     tacacgaggc acagaagcga agtgaaaagc gaggcagctt cctggcgttc cgccttgact      1440
     gtccgcacga tctgagcgga agcccgtggg accatccggg acagagcaag ggacaggcgg      1500
     tcgggtatcg agaggagtga tcctggagag ctcgtcagtc tgttcaccct agtctgagaa      1560
     cggtgacgct tccctaagcc cgcacggctg accccatagc gagtctgaat cgtggccgag      1620
     cagtcaccga gccaatcgcg tcaggagcaa gcagcggtca aggatcttca aggagcgaca      1680
     aaacggaaca ccgtgtcaac gaggcgagcg aacatcgaga caacccacac cgtcggagac      1740
     agcgagacaa gcaaattata aagccgactg cagttatacc cgcaataaac ccactccgaa      1800
     cccgtgaatt ctgtgctttt tcactgaact actgggcggt cacgtttata taaatttggt      1860
     gggacgaaca cacacaatct actgagctag ccgcacaaat accgtagcga gcagaaacca      1920
//
ID   Gypsy-9_DBp-I repbase;    DNA;    INV; 6023 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.05, Created)
DT   26-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DBp_;
KW   Gypsy-9_DBp-LTR; Gypsy-9_DBp-I.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6023
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 669-669 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3799-4272] - Integrase core
CC   LTRs are 90% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           310..1398
FT                 /product="Gypsy-9_DBp-I_1p"
FT                 /translation="MDQQPPAQGQPQIGVAPNPLTEQNLNQLLSQIRNIPT
FT                 FEGDPSTLGTFVRRVNYLLLLYPTTNDRQTSVIFGAIELQITGDAQRILQV
FT                 LQVNNWPDLRAALIDEYKTQTPVEELLRRLYNTNFQGNLRKFCNEIELKQL
FT                 VISNKLELEGNPNELILYTEAMFKTTKNLIQRKLPDRIFMTLARSDISTVL
FT                 KLKQAAQQEGLYEENENLKHYNINVNKIQKHQQTNYTRNPYPDTNLYNTQQ
FT                 FNPGPALSIQPHPNQPQRMVPQNYRFQSNNRNNTFDQNRGSYQEFRRNLIQ
FT                 GQQNNTMNQSQQPGGRSGSVPNQPQKRVRESNSGQSRMQVDENYQQNKEYK
FT                 EDVYNENENFPMQASDQLHT"
FT   CDS           2365..4293
FT                 /product="Gypsy-9_DBp-I_2p"
FT                 /translation="MPFGLKNAPATFQRCMNNVLRELINKHCLVYLDDIIV
FT                 FSTSLDEHLTSLKIVFEKLKNANLKIRLDKCEFLKKETEFLGHIVGPNGVM
FT                 PNPEKVKAINKFPIPKTQKEIKSFLGLCGYYRKFIPNFADISKPLTKCLKA
FT                 GSKVTFKDDTFIAAFNKLKQLIINDPILICPDFGKRFQLTTDASNFALGAV
FT                 LSQDNKPISYISRTLNEHEENYSTIEKELLAIVWATKTLRPYLFGRRFEIL
FT                 SDHKPLVWLNNIKEPNMKLQRWKIRLGEYDFEIKYLEGKQNHVADALSRIK
FT                 INEVYYGSNKATAHSAEEDNENLITITEKPFNHFARQVEMIRSNKEGEESE
FT                 NYFKKVKIKIMFNELNIEKAKQILIKHFCTKSSALYIEHDSDFEIIQEAFK
FT                 QVMNTTTKIVRAVIKLQDIKTYAEFKEIIVSNHEKLLHPGIEKMVRLFKET
FT                 YYYPDYQNLIQNLINECNVCNQAKTEHRKTSLLLKTTPETEFCREIYVADI
FT                 YAIENQNYLTCIDLYSKFGSAIELNGKDWMEVKRGLFRIFNSMGKPRTLKT
FT                 DRDSSFMSIALKNRLDTENVNIQITTSKNGVSDVERLHKTINEKIRVIETS
FT                 DNPENKLMKMEVILYTYNHKIKHNATGRTPADIFIYATMHIIPVL"
XX
SQ   Sequence 6023 BP; 2507 A; 1008 C; 923 G; 1584 T; 1 other;
     tgtaaacggc gcagtcggta ggatctcttt aaaaaatatc cttgcgataa aacaaagtcg        60
     ggagcttact gatcaattaa aaggatattt ctaaactact aggatatcca gatcagcgcg       120
     tggaattgcc tacaagtaag caatttattc gactagctcg gaagtgcaac taagagatcc       180
     gcaaaagaac ctaagtgcaa attaaaggca ctgaacaaat attataataa attaaagttc       240
     aatcgactac tgaataaatc caattcggtc agtaataaag ttgagtggaa tttaattaaa       300
     cacaacaaaa tggaccaaca accaccagct caagggcaac cacaaattgg tgtggcaccc       360
     aacccattga cggagcaaaa cttaaatcaa cttttgtccc agatccggaa tattccaacg       420
     tttgaaggag atccatctac cctaggaacc tttgtcagaa gagttaatta ccttttgctt       480
     ctgtatccta caaccaatga tcgacagaca agcgttatat ttggagcaat tgaacttcaa       540
     atcaccggtg atgcccagag gattctgcaa gttctacaag tcaacaactg gccagatctt       600
     agagcagccc taatcgacga gtacaaaacg caaacacctg tggaggaact attaaggcga       660
     ttatacaata ctaattttca aggtaatcta agaaaatttt gtaacgagat cgagcttaag       720
     cagttagtta taagcaacaa attagaactt gagggaaatc caaatgaatt aatattgtac       780
     acagaagcaa tgtttaagac tacaaaaaac ctaatacaac gaaaattacc tgacagaatt       840
     tttatgacat tagcaagaag cgatatttca acagtactta aactgaaaca agcggctcag       900
     caagaagggc tatacgaaga aaatgaaaat ttaaaacatt ataacatcaa tgttaataaa       960
     attcaaaagc atcaacaaac aaattataca cgtaacccct accctgacac taatttgtac      1020
     aacacccaac aatttaatcc tggcccagct ctttcaattc aaccacaccc caaccaaccc      1080
     caaagaatgg ttccacaaaa ttataggttc caatcgaata acagaaataa tacttttgac      1140
     caaaataggg gaagttacca agagtttcga agaaatttaa ttcagggaca gcaaaataat      1200
     acaatgaatc aaagccaaca gccaggtgga cgatcgggct cagtacccaa ccaaccacaa      1260
     aagagagtca gagaaagtaa tagtggacaa tcaagaatgc aagtagacga aaattatcaa      1320
     caaaataagg agtacaaaga agatgtttat aatgaaaatg aaaattttcc aatgcaagcc      1380
     tcggaccaat tacatacata gaaataacta taaataatca taattatcgt tgcctcgtcg      1440
     ataccggttc atcaattaac ttaatgaaaa agaattttct caacgggagc atacataaag      1500
     atccgacaat tatacgcact atgacaggtc attatgaact aaatgaattt gtaaaagttg      1560
     cacctaatag tttatttact caagaacaaa tattttatat tcacgacttt tcttccaatt      1620
     atgacattct attaggacga aagttactag aggcaaacca ggcaaatatt gattatttaa      1680
     ataatcgcac tactattagt gggcgcattt ttttacacaa aagcattagt ttgaaaaatc      1740
     caacacaaat aaatgatttt gaggcattgc taaaatctaa aaattatact gatgaaataa      1800
     attatgctgt tcaaaatgaa ttagcagagg gaaaaagtta tcgcttagaa cacttaaatg      1860
     aagaagaaaa agttaaatta ttaaaattaa ttaaccaata taaatgcatt caatatcgtg      1920
     atggtgaaaa tttgaccttt acgaatgttg ttaagcatga aataaaaact catcatgaaa      1980
     atccaattta taaaaaccgt atgggtatcc ttcttttcat ttgaaaaaga agttgagtct      2040
     caaatacagg atatgttaaa gcaaggaata attaggcaca gccaatcacc ttattgcagt      2100
     ccattgtgga tagtaccaaa aaagaaagat gcttcaggca aacaaaaatt tagacttgta      2160
     gtagactata ggggcttaaa tgagatcact attagtgata aatttcccat tcccaatatg      2220
     gacgaaatac taggcaagct aggacggtgt caatatttta ccaccattga tttggttaaa      2280
     ggtttccact aaaccgaaat agaccaaaat tccataaaca aaacagcgtt ttccacaaag      2340
     tacggacact acgagtacac acgaatgcca tttggattaa aaaatgcacc tgcaactttt      2400
     cagcgatgca tgaacaatgt ccttcgtgaa ttaataaaca agcattgcct tgtatacttg      2460
     gacgatataa ttgttttctc tacgtccctt gacgaacacc ttacttcatt gaaaattgtt      2520
     tttgaaaaac ttaaaaacgc taatctaaaa atacgactag acaaatgtga atttttgaaa      2580
     aaagaaacag aatttttggg acacatagtt ggaccaaacg gtgtaatgcc aaatcctgaa      2640
     aaggttaagg caatcaataa atttccaatt cccaaaactc aaaaagaaat aaaatcattt      2700
     cttggtcttt gcggttatta cagaaaattc attccaaatt tcgcagacat ttcaaaacct      2760
     ttaactaaat gtttaaaagc tggttctaaa gtgacattca aagatgatac atttattgca      2820
     gcattcaata aattaaaaca acttatcata aacgatccca tactgatttg tccagatttt      2880
     ggaaaaaggt ttcaattaac tactgatgct agcaactttg cattaggagc agttctttct      2940
     caggataaca aaccaatcag ttacattagt aggactctaa atgaacatga agaaaactat      3000
     agtacaattg aaaaagaatt attagctata gtatgggcaa caaaaacctt aagaccctat      3060
     ttattcggaa gaagatttga gatattaagt gaccataagc cgttagtctg gctaaacaat      3120
     atcaaagaac ctaatatgaa attgcaaaga tggaagataa ggttaggaga atatgacttc      3180
     gaaataaaat atttagaagg aaagcaaaat cacgtagccg atgcattgtc aagaatcaaa      3240
     attaacgaag tatactatgg cagtaacaaa gcaacagcac acagcgctga agaagataat      3300
     gaaaatttaa taacaattac tgaaaaacca ttcaatcatt tcgcaagaca ggtagaaatg      3360
     attcgaagca ataaagaagg tgaagaaagt gaaaattatt ttaagaaagt caagattaaa      3420
     ataatgttta atgaattaaa catcgaaaaa gctaagcaaa tattaataaa acacttttgt      3480
     accaagtcaa gtgcacttta catcgaacac gactctgatt ttgaaattat tcaagaagct      3540
     tttaaacagg ttatgaacac tactacaaaa attgtaagag cagtaattaa attacaggac      3600
     ataaaaactt acgctgaatt taaagaaatt attgttagca accacgaaaa actattgcac      3660
     ccaggaattg aaaaaatggt aaggcttttc aaagaaacct attattatcc cgactaccag      3720
     aatttaattc agaatttaat taatgagtgt aatgtttgta accaagcaaa aaccgaacat      3780
     agaaaaacat cgcttttatt aaaaacaact ccagaaacag aattttgtag ggaaatttac      3840
     gtcgcagata tttacgcgat cgaaaatcaa aattacctaa cttgtattga tttatactca      3900
     aaatttggaa gcgcgattga attaaacgga aaggactgga tggaagttaa aagaggactt      3960
     tttcgaatat tcaattcaat gggaaaaccc agaaccttga aaacagatag ggatagttct      4020
     tttatgagta tagcgcttaa aaatcggctg gacacagaaa acgtaaatat tcagataaca      4080
     acaagtaaaa atggagtatc agatgtagaa agattacaca aaacgattaa cgaaaaaata      4140
     cgtgtgatcg agaccagcga caatccggaa aataaactta tgaaaatgga agtaatactg      4200
     tatacttaca atcataaaat aaaacacaat gcaacaggta gaaccccagc tgatattttc      4260
     atttatgcta ccatgcatat aatacccgta ttataaaaga agctaaaata gaacaactta      4320
     ataaaaaacg acaacatttc gaggtaaata ccaaatttag aaaggctccc ataattcacg      4380
     ggaaattaca caatccttat aaaaagacag gaaagtacaa atagataatg atcattttga      4440
     ggaaactaac agaggtcgaa aaataaaaca ttacaaaaca aacttccaga ggcaaaagaa      4500
     agttaataaa agtaaatatt tgcaggagga cccagatcaa gacccagtgc tttgactttc      4560
     atctttctga tatcaacgtt aataataatg acgccaatgg gtaacagcca atttatagaa      4620
     attagcccta taaaatcata caatggctat ttgttattta tgaccgacac aatcaacatc      4680
     ccagatagtt ttgaatacca ttgtctcaca attaatatta cgaaaacgga agaaacttac      4740
     aaaaattttc tatcacaagc gtttggcttt aaggaaataa tacagattaa atatttaatt      4800
     gaaaaactac aaagagaaat gaatgggtta aaaattgtta ggagaaacaa aagaggatta      4860
     gctaattttg taggaacagc ttacaaatat ctttttggaa cattagataa taatgataaa      4920
     gaagaattag aagaaaaaat caatgtaatc gctcaaaaca gtgtacaggt aaacgaacta      4980
     aataatataa tcgatacagt taacaaaggc atcgatataa taaacaagca actcgaatac      5040
     aacgaaaacg aaaaaattct tgaattattg atttttaatt tagaacattt cgcagaatac      5100
     attgaagacc tggaaatggg aatgcagtta gsaagattag gaatattcaa tccaaagtta      5160
     ttaaaacacg actacttgac aaacattaat tctgagatac ttctgaacat aaaaacctca      5220
     acttggctta ggtcagattc aaacgaaatt ttaatcatat cccacatacc cagagaaata      5280
     aagaaccttc ccgtatacga aatattacct tatccagatg aaaataataa aatattacaa      5340
     gataacaccc aaaacaaata ttacgtatac agaaatagtt tgtataacaa agaaacaaaa      5400
     aaaaccctgt taccaacaca tgtcttttag gcctcattaa tcaaacagat accagttgca      5460
     ggtacacaaa aacgctctta actacccaaa ttaattatgt cgaaccattc ttaatacaat      5520
     tttgatttag tatagttttt gacaagttac atgtaactat gagaatttgt caaaaactat      5580
     actgaatcaa aattgtatta agaatgaaat tgtaattgaa ggaaacaata tgatcaaaat      5640
     acacaattgc tcaattgcaa ttaacgattt atccattagt aattataatt ctgactacac      5700
     acaaagcata tacacaagaa ataatgtcac caaattagac ccaatatcat acatacaagc      5760
     aaaagaaata ttttttgaac aaaataaaaa agaaaaccag atttacaaaa taattgtaat      5820
     tgtaacactg ggtctcttaa tattaagtat atcactgtac ctactttata aatttaagga      5880
     aatacctaaa agaatactta taaaatacaa taacacaaaa ggtgacgacc caacaataga      5940
     ctcacaagag ttacaagaaa taccaaaact ataccccaaa atcacataaa taaccatacg      6000
     attttgtcta agtgatgggg gag                                              6023
//
ID   Gypsy-9_DBp-LTR repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.05, Created)
DT   26-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila bipectinata genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DBp_;
KW   Gypsy-9_DBp-I; Gypsy-9_DBp-LTR.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-438
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 670-670 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 438 BP; 170 A; 97 C; 65 G; 105 T; 1 other;
     tgacgtgtct gcactgcgat ttctcaacgg ccaccagttc aaagaacgaa accgttcaca        60
     aataaacaga atcgccaatt tcggctttga ttaaaaacga tacagaagct cgagatcccg       120
     caatgcaaac aaacgaagaa aattgattaa gtccgaacgt caacaatgac ataattccat       180
     aaacgtaaaa atccaataag atcgcaaaat ctaataagac cgaattatgt aaacataaac       240
     aaagaagtgg cgatcgcatc atccacttgc tattgcgtca cctaatgcac taacagtaaa       300
     ttctaagacg caaaccgagg tttcattcta accaattctg taacataccs aattagtctt       360
     tttccaacgc tctaataaag aataaccaac ggatataaaa taaatcctga tttttttatt       420
     cgggcaaaga acgactca                                                     438
//
ID   Gypsy-9_DEl-I repbase;    DNA;    INV; 4489 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DEl_;
KW   Gypsy-9_DEl-LTR; Gypsy-9_DEl-I.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4489
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 526-526 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3130-3603] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1810..3990
FT                 /product="Gypsy-9_DEl-I_1p"
FT                 /translation="MNAPSVFQRAIINALGPLAHTYVIVYIDDVLIVAETK
FT                 DQAMERLDEVLKILMEAGFSFNINKCTFLTQKINYLGYEVSAGEIRPNGRK
FT                 IKALVELPPPQTVPQLRQFIGLASYFRQFVPKFSELLKPLFLLTSQKCKEL
FT                 TWKDEHEQLRQKIIEILTSSPVLTIFDPKHPVELHTDASMVGYGAILMHRI
FT                 DKKPYVIEYFSKCTTPVESKYHSYELETLAVVNAVKHFRHYLQGLEFVIFT
FT                 DCDSLRASRSKTTLTPRVHRWWGYLQAFQFRIEYRKGERMAHADFLSRNPL
FT                 PVQKDSQLEKVVEKRINLTEVSDNWLLAEQQRDPEVSEIIEKLRNDELEED
FT                 LLKTYELRKGMLHRKIQRNGRTRCLPVIPRAYRWAVINHVHEAVMHLGWEK
FT                 TLDKVYAHYWFAHMSKYVRRFVENCITCKISKGSKGKVQAELHPIPKIDIP
FT                 WHTLHIDITGKLSGKNDQKEYVIVIIDAFTKFVYLYHTLSLDTENCVRAMK
FT                 SVVSLFGLPTRVIADQGRSFASSGFREFCSSQKINLHLIATGASRANGQVE
FT                 RVMSTLKSMLTAVETSQRSWQDALLEVQLAINSTINRVTKVSPLELMIGRE
FT                 GRPFGLLPITEEEEVIDRDKIRAQAKENIDRNAHYDKKRFDKNKAKIVKHQ
FT                 VGDYVLIKNEERNQTKLDPKFKGPFEIIEVLEGDRYKLKSLTSKRQYKYAH
FT                 EHLRSLPDTQILAEIDEEFDRTIDENN"
XX
SQ   Sequence 4489 BP; 1420 A; 833 C; 1044 G; 1189 T; 3 other;
     tgaaaacgct ccttctccgt tatcagaagt gggatcggcc ttgccacagg acaatgaaag        60
     tgttatagct gcattagaag ctcaaaatcg cgccttgttg gaamttgtga aatcaatgaa       120
     cacaccgcga gtgccattaa cggaagttaa agcgaattcc atatcattgc cgaaatttga       180
     ccctgatagt gcgggcgcgg atgcaagtgc gtggtgcaat acagttgcat taatatttgc       240
     tgaaaacatt ctacaaggca gcgmtcttgt catggcactc agcaaagcta tgcaaggaag       300
     tgcttcccag tggttggcgc aaatttgttt cggcggcatg acctggccgc aattccagga       360
     attgtttgtg caacgatttg ttggtatcga gaccccggca gcgacttgat gaacgtcttt       420
     aatgggcgtc caaatccagg agagaattta cccgaatacg gaagccgcct ggtgacgtcg       480
     ctcatgtcca aattcaaatc aattgaattg gaagagctca tcgtatccat cgttttgacg       540
     cacctttcaa acttggatgc tcgcctttta aagtcaatgt ttacgggcgc tgttaaaacc       600
     cgcaacgatc tgcagcaaca attaaaggcg tatgcgtatt taaaacgcaa cgaatccttt       660
     ggaaacgaag tcgaaaggaa gaaaatgaag ctgccatctc tagtgaagtg tcatcactgt       720
     gggcgtcttg gccataagat tgcggattgt caaaaaaggc gaacggacga gagacaacgg       780
     accacctcaa ctccaggaca acaacaacgc gcagtcaaca acaggacctg cttcaaatgt       840
     ggggagtttg ggcactatgc ttcggaatgc ccacgtaatc gacataatct caaggaagtc       900
     gaggttaaca aaagagtgaa cttggtggcc atagaaccaa agggaattwt gaaacaattt       960
     ggtgagtcta ttccattttg ttttgattca ggcgctgaat gttctcttgt aaaggaaagt      1020
     gtagcagcga agttacaagg aaagcgtcag tctagcgcag tggttttaag gggcatcgga      1080
     aacgaaccgg tgtggagcac agtacagata atttgtaatg ttaatataaa cgaacatttt      1140
     cttgaaatat tgtttcacgt tattatggat acttttatga attttgatat tcttattgga      1200
     agagatattt taagtcaagg cttcggagtc gtaattgaag caaataaatt tgttatttat      1260
     aagcctaaaa tggtacaagc actgtcgtat gaatcaaatc tggaaaaccg ttttaatttt      1320
     aataaagatt taagtgagtt tgataaagaa aaattaagtg aaatattaga aaatattcca      1380
     aatcatttat agtgggcatt ccacacacac gagtaacaac agggctgctc agcatacggc      1440
     ccattgatcc acataagact gttcagcgtc gcccatatag acttagtgaa gaagaaaagg      1500
     ctaatgttag ggaaatgatt aacgaattat tgtctgcaaa agttatacgt cctagtagtt      1560
     ccccttttgc tagtccgatg atgctggtca agaagaagaa cggttcagat cgtttatgcg      1620
     tagactacag ggaactaaac gcaaatacgg tggcagataa atacccgtta ccacttatag      1680
     ctgaccaaat tgcccgtatg aggggagcta gtttcttttc ttgcttagat atggctagtg      1740
     gcttttatca aattccagtt cacccggact cggtcgaacg tacggcattt gtaacgcccg      1800
     aggggcagta tgaacgctcc atcggtgttt caacgtgcaa taattaatgc tttgggacca      1860
     ttagcccata cctatgttat tgtttacatt gacgacgttt tgatagttgc agaaacgaaa      1920
     gatcaggcaa tggaaagatt agatgaagtc cttaaaatct taatggaagc cggtttctca      1980
     tttaacataa acaagtgtac attcctcaca cagaaaataa attacctagg gtatgaagtt      2040
     agtgcgggag aaatacgacc aaatggtcgc aaaataaaag cacttgtgga actaccacct      2100
     cctcagacgg tacctcagtt aagacaattc ataggattgg cttcctactt ccggcagttt      2160
     gtgccaaaat tttcagagtt attaaaacca ttatttctac taacttctca aaaatgcaag      2220
     gaacttacat ggaaagacga acatgaacaa ctaagacaga aaataataga aattttgact      2280
     agttctccag tattgaccat cttcgatccc aaacaccctg tcgagttgca tacagatgca      2340
     agtatggttg gttatggtgc cattttgatg caccgaatag ataaaaagcc gtatgtaatc      2400
     gagtatttta gtaaatgcac aactccagtc gagtccaaat accattcata cgagttagaa      2460
     actcttgcag tggtgaacgc tgttaaacat ttcaggcatt atttgcaggg actcgaattt      2520
     gtgattttta cggactgcga ttcattaagg gcgagtcgtt ccaagaccac attgacgccg      2580
     agggtacacc ggtggtgggg gtacttgcag gcttttcagt ttcgcattga gtataggaaa      2640
     ggggagagaa tggctcatgc tgattttctg tctcggaatc ctctacccgt ccaaaaagat      2700
     tcccaattag aaaaggtagt cgagaagcgc ataaatttaa ccgaggtctc cgacaactgg      2760
     ctactcgccg aacaacagcg agatccagaa gtttctgaaa taatcgaaaa gctacgtaac      2820
     gacgaattag aggaagattt actaaaaact tatgagttga gaaaaggtat gcttcatcga      2880
     aaaatccaac gcaacggaag aacacgctgt ctgcccgtaa tacccagagc ttacagatgg      2940
     gctgtaataa accacgtaca cgaagctgtg atgcacttgg gttgggagaa gacattagat      3000
     aaagtttatg cgcactattg gtttgcccac atgtcaaaat atgttaggcg tttcgtagaa      3060
     aattgcatta catgcaaaat atcaaaaggc tctaaaggta aagtgcaggc agaactccat      3120
     ccgattccga aaatagatat accctggcat actctgcata tcgatattac agggaaattg      3180
     agtggcaaga atgaccaaaa agagtatgtc attgttatta tagacgcctt tactaagttc      3240
     gtatatttgt atcacacttt gagtttagat acggaaaact gtgtgagagc aatgaaatct      3300
     gttgtctcgt tgtttggttt gccaacgcgc gtgattgccg atcagggtag atcttttgcc      3360
     agttccggat tccgcgagtt ttgctcttcc cagaaaatta accttcattt gattgccacc      3420
     ggcgccagcc gagctaacgg gcaagtcgaa cgcgtaatga gtacgcttaa aagtatgctt      3480
     acagcggtcg aaacaagcca gcgctcctgg caagatgcgc tattagaagt ccagttagct      3540
     attaatagta cgattaaccg tgtcaccaaa gtaagtcctt tggaattaat gatcggcagg      3600
     gaaggaaggc cattcggttt gttgcctatt acagaagaag aggaggtaat agatagggac      3660
     aaaattagag cgcaagccaa agaaaacatt gatcggaacg cccattacga taaaaagaga      3720
     tttgataaaa acaaagcaaa gattgtaaag caccaggttg gtgactatgt tttgattaaa      3780
     aatgaagaga gaaatcaaac gaagctagat ccaaaattta aggggccatt tgaaattatt      3840
     gaagttttgg agggagacag atataaacta aagtcgttaa ctagtaaacg gcagtataaa      3900
     tatgcacacg aacatttacg gtctctaccc gatacgcaaa tacttgcaga aatagatgaa      3960
     gaatttgatc gtacgattga tgaaaataat tagctccgaa tgtcaatgtg tatacggctg      4020
     caccacgatt ctgtgtgaat gcgtggcggg agcatatgta tgtgtatacg gctgcaccat      4080
     gatcctatgg ggatgcttgg cgggagcgta tgtgtaaatc ctacgaggat gcttggcaag      4140
     aacaattgtg tgagactgca ccacgattct gtgtgaatgc gtggcgggag tatatgtgta      4200
     tacgactgca ccatgatcct gtgtggatac gtggcgggag tcaggaggac gagttggtgt      4260
     ccaattggaa ataaagagaa attgtgaaaa tgaatattgt tgagatataa caagaaacgc      4320
     tgttattggt tgtatgttta tgaaataatt gaatgattta gattagaagc taatgtcaat      4380
     aaataattga aaggaatact gcttgttgta aagcttaatg ggtcatgacc acgcatacac      4440
     gaggacgtgt gcaggtcagg aaggccgtgt cgcagttctc agaaatatt                  4489
//
ID   Gypsy-9_DEl-LTR repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   18-JUL-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila elegans genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DEl_;
KW   Gypsy-9_DEl-I; Gypsy-9_DEl-LTR.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-304
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 527-527 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 304 BP; 75 A; 63 C; 93 G; 73 T; 0 other;
     tgaattcgat gaacgctaaa gttatttggc gctcagattt ggttgtcgct tagcataagc        60
     cgctggttcc tggtaaaaca tggattctag gaattcctgc tctactcgta gcgcgacggc       120
     attgccagat ctcttttaga gtggcgtagt cgtcgagtga ggcccggtcg cccaagagag       180
     agagagagag aaccggagag caagaagttg caagaagatg agctctggta tttgaagcgg       240
     tggtcagttt gaatcgggcc cttggcgcga tcgggactta ctgcgcaatc gaaatggcag       300
     acca                                                                    304
//
ID   Gypsy-9_DEu-I repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DEu_;
KW   Gypsy-9_DEu-LTR; Gypsy-9_DEu-I.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4560
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 865-865 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [3618-4079] - Integrase core
CC   'GGTAG' target site duplication
CC   LTRs are 100% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           635..3172
FT                 /product="Gypsy-9_DEu-I_1p"
FT                 /translation="MTDNILKPFLCDTIEKSVLRNEWEKWLRAFTIAMEVD
FT                 QIESPKTKRTKLLHLGGVQLQTVAYSLPGAIIEYDEKLDNNVFVILIEKLN
FT                 AYFSPKQNSTFERHLFRNLAPQEGENFSKFILRLRQQMYKCFFGESKKEIE
FT                 EICLKDKILDSWAPPELKKKLLSKEHSLDEIIEACQVEEQINKQSEAMQKP
FT                 TVEAINEIEARKAKLEVGCSRCGRMGHANSDPVCPARLAKCNKCSKIGHFA
FT                 RRCRSKQYPQHKNGNLKRRPNDDCAGEGRSDFKRKKESSNCFKICSDEEEE
FT                 LISCKIGGQEVSLIIDSGSRFNLISHIDWETLKRKTPAVFNVRSHSQKQFR
FT                 GYASDQLLEVICVFEAPISAVPDVEVIATFFVIKNGRQSLLGRETAIKLNV
FT                 LRLGLSVNRVETTAPFPKWKGVEIKLCIDPQIKPVQQPVRRIPVALEDKVA
FT                 AKLDEALKRDIIESVTSPSRWISPIVLAFKENGDIRLCVDMRLANKAIRRE
FT                 NYPLPTFESFMTKLRGARFFSRLDLKDAYHQLELDEDSREITTFITPMGLF
FT                 RYKRLMFGVNSAPEIFQRHLEQLLVDFPNVMNYIDDVIIFGESQEEHDKTV
FT                 RDVRKVFEENNVLLNDQKCVWKSKKLKFLGHILSDRGIEVDPDKVDAIKAF
FT                 REPINKEEIRSFLGLVTYVGKFIPDLADCTEPLRQLLKKDTKFSWGETEKN
FT                 AFLNLKNRLAYVPNLQYFNPGNRTRLVADASPVALGAVLLQFSANNDPLII
FT                 SFASRALSDVEKRYSQTEKESLALVWAVERFYYYLAGLRFELVTDHKPLEA
FT                 IFKPTSKPPARIERWLLRLQSYDFKVVYKAGKENISDALSRLCR"
FT   CDS           3603..4559
FT                 /product="Gypsy-9_DEu-I_2p"
FT                 /translation="MDRNPFPTGPWIWVASDLLGPLPNNEFILVFIDYYSR
FT                 YMEFKFLRSISSASLIEVMKEIFCRLGYPKYLRTDNGRQYISSEFAEYCKI
FT                 CGIEQVKTPPYWPQANGEVENMNRSLVKRLKIAYSNSNNYKEEIQKFVLMH
FT                 NVTPHGTTGVAPTQLMFNRVVRDKVPCIDDIDEQFTDSAERDRDCILKQKG
FT                 KEQADKKRGAKEIEIKVGDKVLLKNVIFTNKLTPTFGDTEYEVVERNNNII
FT                 KITAEGKTLIRNVSHVKKIPITTSEATASVISPLGNARDNRTSVQDYQEDG
FT                 EDQEHRTERLAESLHQPLKLKLVNKGG"
XX
SQ   Sequence 4560 BP; 1535 A; 866 C; 1017 G; 1142 T; 0 other;
     ttggcgacga ggtaaattta ctattttgtg caaaatatat atatatatat atatttctaa        60
     gtgaaactca attctagtga attgaaatat aattccaatg taagtacaca aaaacgaaaa       120
     agagtgcgaa agtagagcac aaaacgaaag ataacggttc ttgtgtctac gttggcgtga       180
     gaggcttcgc tctcagaggc gatgttctcc acgcaagacg aaatctctaa gcaaagagta       240
     aaagaaaaga gaagtagaaa atgatgaagt gttaaattta acaagtccat cgcggcaacg       300
     tacacacgtt tgtatgtgag ccaaagagag tgaaattatt ctaacaaaga gaggctgagt       360
     gtcatacaag ccaaaatatt aagagagaca ttgtatatgg ggaaggctgg gtgtaggaga       420
     taaatctatg caagccacat atacagatgc aaataagtac gaatatacat atgtacgtac       480
     aaagagaagg ctgtgcgaaa gagtttcgtc ttgcgtaagc caaatattaa atcgatcgtg       540
     tataaaatac aagtcgacaa aaagaaaaca tgtaaaaggc tgagtaataa caagccaata       600
     tttacctata ataaaatctc gtttttcaga taagatgact gataatattc ttaaaccatt       660
     tctatgtgac acgattgaaa aatcggtgct cagaaatgaa tgggaaaaat ggttaagagc       720
     gttcaccata gctatggagg ttgaccaaat tgagtcacca aaaaccaaga gaacaaaact       780
     acttcatttg ggtggagtac agttgcagac tgttgcatac tcattaccag gcgcaataat       840
     tgagtacgat gaaaagctgg acaataatgt tttcgttatt ttaattgaga agttaaatgc       900
     ctatttttca cctaagcaaa attccacgtt cgaacgacat ctttttcgca atttggctcc       960
     acaggagggg gaaaatttct cgaaatttat tcttcggcta cgacaacaaa tgtataaatg      1020
     cttctttggc gaatcgaaaa aggaaatcga ggaaatctgt cttaaggaca aaatactgga      1080
     ctcgtgggca cctcctgaat taaagaagaa acttctgagt aaagagcact ccctagacga      1140
     gattattgag gcgtgtcaag tcgaggagca aattaacaaa caatccgaag caatgcagaa      1200
     gccaaccgtt gaggcaataa acgaaattga ggctcgtaaa gccaaactgg aagtgggatg      1260
     ttctaggtgt ggtcggatgg gtcatgccaa tagtgatccc gtttgtccgg cgcgactcgc      1320
     caaatgcaat aaatgctcga aaatagggca ttttgcacgc agatgcaggt cgaaacagta      1380
     tcctcagcat aaaaatggaa acctaaagcg acgaccaaat gacgattgcg ctggagaggg      1440
     tcgatctgat ttcaaaagga agaaggaaag ctcgaattgc ttcaaaatat gcagtgacga      1500
     ggaagaagag cttatcagct gcaaaattgg aggccaagaa gtttctctta ttattgattc      1560
     tggttcgcga ttcaacctca tcagccatat agactgggaa acactgaaaa gaaaaacccc      1620
     ggcggtgttt aatgtgagat cacattcaca aaaacaattc cgaggatatg cttctgatca      1680
     attactagaa gtaatttgtg tttttgaagc accgatatca gctgtaccag atgtcgaggt      1740
     gattgctaca ttttttgtta ttaaaaatgg acgacagtca ttactggggc gtgagacagc      1800
     cataaagcta aatgttcttc gtcttggcct aagtgtcaat cgagttgaaa cgaccgcacc      1860
     atttcccaaa tggaaaggtg ttgaaataaa gctgtgcatt gatccccaaa tcaagcctgt      1920
     tcagcagccg gtgcggagga tcccagtggc acttgaagat aaagttgcag ctaagcttga      1980
     tgaagctttg aagcgagaca ttattgaatc tgttacgagc ccgagtcgat ggatctcccc      2040
     aattgtcctg gcgtttaagg agaatggcga tattcgactc tgcgttgata tgcgtctggc      2100
     gaacaaggca attcgtcgag aaaactatcc actaccaact tttgaatctt ttatgaccaa      2160
     acttagaggt gcacgattct tttcgcgctt agacttgaaa gacgcttatc atcagctgga      2220
     actggatgaa gacagcaggg aaatcacaac ctttataaca ccaatgggac tttttcgata      2280
     taaaagattg atgttcggag tcaattctgc tccagagatt tttcaacgtc atctcgagca      2340
     gctgttagta gattttccga atgttatgaa ctacatcgac gacgttatta tcttcggaga      2400
     aagtcaagag gaacatgaca aaaccgtaag agatgtccgc aaggtattcg aggaaaacaa      2460
     cgtactgcta aatgaccaaa aatgcgtttg gaaaagcaaa aaacttaaat ttcttggcca      2520
     cattctttcc gatagaggca ttgaagtcga tcccgataaa gttgatgcta ttaaagcatt      2580
     tcgagagcca atcaataaag aggagatacg aagttttctc ggcctggtga cgtacgtagg      2640
     gaaatttatt cctgatctag cagactgtac ggaacctcta cgtcaacttt taaagaagga      2700
     cacgaaattc agctggggcg aaacagagaa aaacgctttt ctcaacctaa agaatcgact      2760
     ggcatatgtg ccaaatcttc aatatttcaa tccaggaaat cgaacccgtc tcgtagcaga      2820
     tgccagtcct gtagcactcg gagcagtttt attgcagttc tcggctaaca atgatccctt      2880
     aattatttca tttgcaagcc gagcgttatc ggatgttgaa aaacgttatt cgcaaacgga      2940
     gaaagaaagt ctggctctag tctgggcggt agagcgattt tactactacc tggctggact      3000
     tcgattcgaa ctggtgaccg accacaaacc tttggaagca attttcaaac caacatcgaa      3060
     accaccagcc cgtatagaga ggtggctcct acgtctgcag tcatacgatt ttaaagtagt      3120
     gtacaaagca ggaaaagaga acatttctga tgcgttatca cgactttgcc gctaacacca      3180
     cccgacactt gtgaaagaga aaccgaatac agtatcctgc atatcatcga aaacattatt      3240
     ccaaaatcga tgaccatctc ggaaattgct aaggactcgg tgaaagacga agaaattatt      3300
     gatgcgatgg cctgtgtaga gaacgacgaa tggaaatcgg agtccccaaa gcaactttat      3360
     ccatttcggt atgagttgtc aacaatagga cctctcctcc tgcgtggtaa tcgtatcgtt      3420
     attccaacat cacttcgaaa tcggattctc gagctggctc atgaagggca cccaggagaa      3480
     tcggccatga aaaggcggtt aagatcaaaa gtttggtggc ctcggatcga ccgcgacgcg      3540
     aaaaattcgt aaaacgctgc aaagattgcc tcctggtgtc tcaaccatcc agaccagcgc      3600
     ccatggatag aaatccattt ccaactggcc catggatttg ggtagcgtcc gatttgctgg      3660
     gtcctttacc caataacgag ttcatcctgg tttttataga ttactactct cgctatatgg      3720
     aattcaaatt tttacgctct atttcgtcag ctagcctcat tgaagtaatg aaagagatat      3780
     tttgtagatt aggttatcca aaatacttaa gaactgacaa tggtcgacaa tatatcagct      3840
     cagaattcgc ggaatattgc aaaatttgcg gaatagagca ggtgaagaca ccaccctatt      3900
     ggccccaggc taatggtgag gtggaaaaca tgaatagatc tttagtgaaa cgattaaaaa      3960
     tcgcgtattc aaattcaaat aattacaaag aggagattca gaagttcgta ctcatgcaca      4020
     acgtgacgcc acacgggact acaggagtag ctccaactca gcttatgttc aatagggtcg      4080
     ttcgagacaa agttccatgt atagatgaca ttgatgaaca atttacagac tcggctgaaa      4140
     gggatagaga ttgtatacta aaacaaaaag ggaaagaaca ggcagacaaa aagagagggg      4200
     ctaaagaaat cgaaataaag gtaggggata aggtgctttt gaagaatgta attttcacaa      4260
     acaaattaac tccaaccttt ggcgacaccg aatatgaagt agtagaaaga aacaataata      4320
     ttattaaaat tacggcagag ggtaagacac ttattaggaa cgtatcccat gtcaagaaga      4380
     ttccaataac gacaagcgag gcaacggcat ctgtaatttc tcctttaggt aacgctcgag      4440
     ataataggac atcggtacag gactaccagg aagatgggga agaccaggaa catcgaacgg      4500
     agcggttggc ggaaagttta catcaacctt tgaagctgaa acttgttaat aaaggaggga      4560
//
ID   Gypsy-9_DEu-LTR repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   15-DEC-2011 (Rel. 17.06, Created)
DT   15-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila eugracilis genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DEu_;
KW   Gypsy-9_DEu-I; Gypsy-9_DEu-LTR.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-206
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 866-866 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 206 BP; 71 A; 32 C; 59 G; 44 T; 0 other;
     tgtgggaatc tgcacagagc agcgagatcg ccaaggagag cgacgatgct agcagcggac        60
     acgagtgatg agtgtcaaga gagacgagag tttagtttta aataagtgag cgagcaagac       120
     agacgtgtgt taataaagaa atgaaataaa ccgaatttaa gtacactaaa gtgcgggtct       180
     attacttgat atcacgggtc gttaca                                            206
//
ID   Gypsy-9_DFi-I repbase;    DNA;    INV; 4647 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.06, Created)
DT   23-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DFi_;
KW   Gypsy-9_DFi-LTR; Gypsy-9_DFi-I.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4647
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 905-905 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1567-1992] - Reverse transcriptase
CC   LTRs are 97% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..2577
FT                 /product="Gypsy-9_DFi-I_1p"
FT                 /translation="MALSRSLEGTASHWLSQTCFPGITWTQFRELFLQYFS
FT                 GTETLAATVMNLLNARPNEGECLSLYGSRMVTSLMARWKSLSVEQIAVSVT
FT                 LAHAAGIDKRLRRLVFTTDIKTRNELHQELKAFSFDARQSQHLSDNFSAPQ
FT                 GKRARAMSHITCHNCGKPGHKKAECRFNKETIQRQQLRNQQSGYIGAKDRS
FT                 SVICYKCGKAGHVSTVCPDRQERPPIKSNTIKDVNICTVLEPLGTLLQFGE
FT                 SFQFYFDSGAECSLIKETAALRLSGTRINNVVRLRGIGGNSVSSTLQILAN
FT                 VLICERSFEILFHAVLDNCIKYDALIGREILSQGIGVTITSSALTMFNTRS
FT                 VLPVVVSEFTPDLADIDTDLHGQDKDKLLSILQGYSNSFINGIPQSRVTTG
FT                 QLEIRLIDQNKTVQRRPYRLSVEEKEKVRHSIQELLDANIIRPSSSPFASP
FT                 MLLVRKKNGTDRLCVDYRELNANTISDKYPLPLISDQIARLSGAKFFTCID
FT                 MASGFHQIPIHESSIERTAFVTPEGQYEYLAMPFGLKNAPSVFQRAINRAL
FT                 GDLTYTYAIVYMDDVMVVARTKEEAFNRLQITLQALAEAGFSFNLKKCSFL
FT                 KSCVEYLGFEVRAGEIRPNPRKIQALIDLPPPQSVTQLRQFIGLVSYFRQF
FT                 VPKFSQLLKPLYALTSKSMSFLWESEHEQIRQKVISILTSEPVLTIFDPQF
FT                 PIELHTDASADGYGAILLHKIEHKPRVIEYFSKRTSSAESRYHSYELETLA
FT                 VYNSIKHFSPLLAWS"
XX
SQ   Sequence 4647 BP; 1367 A; 916 C; 1080 G; 1234 T; 50 other;
     gctgaagatt ctgatggaaa tgaatcttcg tcatcagaag tgggattacc tccgcctcca        60
     gctaatgatg cacatctttt gtcaattttg gagttgcaaa atcgtaattt cgctgaacta       120
     ataaaacaag tgcagtgctc tcaaaatgag ccaaaagatg ccaaaaacct tgtactgcca       180
     aagtttaacc ccgatcgtgt gggatcagac gctctgtcct ggtgttcaac agtcgactac       240
     atcttgtctg aaaaccaact agtgggcagc gctcttgtaa tggccctcag cagatcactg       300
     gaaggcaccg catctcactg gctctcgcag acatgttttc ccggtattac atggacgcag       360
     ttccgagaat tatttttgca atatttttct ggaacggaga ctttggccgc aaccgttatg       420
     aatttgctaa atgcacgccc aaacgaagga gagtgtttgt cgctgtatgg gagcagaatg       480
     gtcacttcgc ttatggcccg ctggaagtca ctcagcgtcg agcagattgc agtatccgtt       540
     acgttggcac atgcagctgg gatagacaaa cgattgcgcc gtttggtttt tacgacggac       600
     atcaaaaccc gaaacgagtt gcatcaggag ctcaaagcct tttcgtttga cgccagacag       660
     agccagcatt tgagtgacaa cttctcagca ccacaaggaa aaagagccag ggctatgtct       720
     cacatcacgt gtcataactg tggtaaaccc ggccacaaga aggcggaatg tcgctttaac       780
     aaagagacaa ttcagcgtca gcagctccgt aatcaacaat ctggatatat tggagcaaaa       840
     gatcgatcgt ccgtgatctg ttacaaatgt ggaaaagctg gacatgtatc tactgtgtgc       900
     ccggatcgtc aggagcgtcc gccaatcaag agtaatacca tcaaagacgt gaacatctgc       960
     accgtacttg agcccttagg aacgttgctg cagtttggtg agtcgttcca attttacttc      1020
     gactctggag ccgagtgctc acttatcaaa gagactgcag cactgagatt atccggcact      1080
     agaataaaca acgtagtgag attgaggggt ataggtggca actctgttag cagcacttta      1140
     cagatattgg caaatgtttt aatttgtgag cgttcttttg aaatcttatt tcacgcagtt      1200
     ttagataatt gtatcaaata cgacgctctg attggtcggg aaattttgag tcagggcatc      1260
     ggcgtaacaa ttacatcaag cgcgcttact atgtttaaca caaggtctgt attacctgtc      1320
     gtagtttccg aattcactcc tgacctggct gatattgata ccgatttgca tggacaagac      1380
     aaagataaac tgctatcaat attacagggg tattcaaatt cgttcataaa cggtatccca      1440
     cagagccgcg tgactacggg acagctagag attcgcttga ttgatcaaaa taagacggtt      1500
     cagaggcgcc cttaccgatt gagtgtggaa gaaaaagaaa aggttagaca ttccattcaa      1560
     gagctgttgg atgcaaacat aataaggccc agttcctctc ctttcgcgag tccgatgtta      1620
     cttgtccgta agaaaaatgg tacagaccgt ctttgtgtcg attatcggga gcttaatgcc      1680
     aatactattt ccgacaagta ccccttgcca ctcatatctg atcagatagc taggttgagt      1740
     ggtgctaagt ttttcacgtg tattgatatg gcgagcggct tccatcagat cccaatacat      1800
     gaaagctcta ttgaacggac ggcgtttgta actccagaag ggcagtacga atacttggca      1860
     atgcccttcg ggcttaaaaa tgcgccttct gtattccaaa gggctattaa tcgtgcccta      1920
     ggtgatctga cttatacata tgccattgtt tacatggacg atgtaatggt agttgcacga      1980
     acaaaggagg aagctttcaa tagactacaa attactttac aagcactcgc tgaagcagga      2040
     ttttctttca acttaaaaaa atgttccttt cttaaatctt gtgtcgaata tttgggcttc      2100
     gaagttagag caggtgaaat tcgtccgaat cctaggaaaa tacaagctct tatagatttg      2160
     ccgcctccgc aatctgtaac tcaactgaga caatttatag gactggtctc gtattttcgt      2220
     caattcgtac ccaaattttc acagttacta aaacccctct atgctcttac ttcaaaaagt      2280
     atgtcatttt tatgggaatc ggagcacgag caaatacgac agaaagtaat ttctatcctg      2340
     accagtgaac ctgttcttac tatcttcgat ccacaatttc ctattgagct tcatacagat      2400
     gcgagtgctg acgggtatgg cgcaatttta ttgcacaaaa tcgaacacaa gccaagagtt      2460
     atcgaatact tcagtaaacg gacttcatca gcggaatctc gttaccattc ttatgagctg      2520
     gaaacacttg cagtttataa ttctattaag catttttcgc cactacttgc atggtcgama      2580
     tttcgccgtt tttaccgatt gcaattcgct caaggcatct cgaacgaaag ccgaactgac      2640
     tccgagagtc cataggtggt ggtcgtacat gcaatctttt gagtttgaca ttcagtatag      2700
     gccaggcgaa cgaatggctc acgtggattt tctgtctcga aatcccgtat cggaaaagat      2760
     cgcatcaagw caaaaggtac agtggaaaaa cgtgttgact tgacagagat caccgacaat      2820
     tggctggtat ctgagcagca acgcgacgaa gagacggaga caattgtttc taaactgaat      2880
     aatgatgaac tgccggaaga cttggccaaa acgtatgaac tgaggaaagg agtgttgtat      2940
     aggaaaatcc aaagaaatgg caaaactcga tgtttgcctg tmatcccagg scgttcagat      3000
     ggtcagtgat taatcacgtc cacgagtcca ttatgcacct aggttgggaa aaaacgttgg      3060
     ataaagttta cgagtactat tggtttgaaa acatgtccaa gtacgttcgc aaatttgtcg      3120
     aaaattgcgt cacatgtaaa ttgtcaaagc ccaccatctg gcaaaataca agccgaatta      3180
     catcccattc ccaaggtcga gatcccgtgg cacacagtcc atatcgacat cacagggaag      3240
     ctgagtggca aaaatgacca aaaggagtac attatcgtgt cgatagatgc cttcaccaaa      3300
     tttgtttatt tgtatcatac cttgaaacta gacaccgaaa attgtatcaa ggcgttagaa      3360
     tcgctcatgt cgttgttcgg cgtccccwst agkmtkgtmg cggaccaggg aagwwgcttt      3420
     wctagctcag cattccgcga kttctgttct acaaataaaa ttgaattaca ccaatagcga      3480
     cgggtgctag cagggcgaat ggccaggtag agcgcgtgat gagtgtgttg aaggcatgtt      3540
     aacggcagta gagacggcca gcgttcgtgg caggaggcat tgggagaaat acaattggct      3600
     attaactgca ctactaatcg ggtgactcaa catagtccat tagagttgtt gataggtaaa      3660
     gaggcgaggc ctatgggaat gttgactgtc gwcgaagata gaacgcawgt cgacktkgas      3720
     aaagctagag aaawggctaa ggagaacatk gamaagagtg cmgwktacga kaaggcwagg      3780
     kttgataagg akmakgcwmw aatwgtgaag cacaaagttg gkgaccacgt mttgctkaag      3840
     agcgaggagc gwcaccagac aaaactggat cccaaattta agggtccatt tgttattaac      3900
     tgaactgcta gatggagatc gatatttatt gaaatcatta actacaaagc gagcgtacaa      3960
     gtacccacat gatagtgtgc gtagtatacc tgatgagcga gaggttagca cagagttgaa      4020
     taatgagtgt gatgatgaag aggcatacga acaagaagca aatcggtgaa ggcagtgatg      4080
     aagatgccat tgataaagsc ggtgagggct gtgaccttga gatagaataa agasattgta      4140
     aackcccgga tcagttccgt atttcatggc tttctgtaga ggtgggcacc cgagttatgt      4200
     ggttcgccat ctgctgcagt aaggctgaaa ttttggtaat gatcggawat ctgttatttg      4260
     gccggctcat aaactaaact gcgagctatw tgtgatggcc ggtttktttg gatgtaagct      4320
     gtgggctaaa tgaacttgtk tatcgactgg ccagtttatt ttgtgaatga ctgtgcgcta      4380
     gttgttggca ttgattttgw aaatgaaatg aataatatga tcaccttatt gscatggatc      4440
     tcatggcaaa cgttgtawga gagtaaaaaa aaataagaag aataagagaa aactttgaaa      4500
     tgattttgtt tgattttgat ttacgaaaaa aaatgtattt tcgcgaaaat cgcttgaact      4560
     tgaatttgta tagaaaataa gagaattgat tttgtaaaac ctttattttg taaactcacg      4620
     aggacgtgag ataggtcagg waggccg                                          4647
//
ID   Gypsy-9_DFi-LTR repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   23-JUL-2011 (Rel. 17.06, Created)
DT   23-JUL-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila ficusphila genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DFi_;
KW   Gypsy-9_DFi-I; Gypsy-9_DFi-LTR.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-291
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 906-906 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 291 BP; 86 A; 45 C; 64 G; 96 T; 0 other;
     tgtcgcagat tattttgaat attaaaatta taattattat ttgttggtac atcattgttt        60
     tgtttcttac tgtttctcca ttctttcgtg cgaggcagat atatagttct gtcaacgtag       120
     tttggccgtg ggcatgagtg atacagatag tgtatgtcat aattcaccac actgtgcgtg       180
     tgtattagaa aatgaagagg aattgaaaag acgccgacag gagttgtgaa atcagtctgg       240
     ataaagaatt tgaacatgcc acgtgccaaa aaacgtttcg ccgaaagtcc a                291
//
ID   Gypsy-9_DHyd-I repbase;    DNA;    INV; 5994 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DHyd-I.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-5994
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2414-2414 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           227..1555
FT                 /product="Gypsy-9_DHyd-I_1p"
FT                 /translation="MSRFDSNRQIKTEIPSDEEWDTDPEVNQTQNLSNLIM
FT                 NTEQVQALINSALQCQEARHRLELNQLQQQLNSLRIEVPQVETYQRISVDP
FT                 NVRCDLPLDIIKSVPDFNGIPDEYVAWRQSATDAYELFRPYEGSANYYQAV
FT                 TIIRNKIRGPARALLVSHNTVLNFEAIIARLDCTYADKTSLRLLRQGLELV
FT                 RQGDLSLMSYYDEVERKLSLVTNKIVMSHEPQQAILLNDEVRSDALHAFIS
FT                 GLRKNLRAAVFPAQPKDLPSALALAREAEASIERSAFSASYARALEERAQA
FT                 SEGNKYRSHNKQGKNNRDNKDQERNPHFVKKQQNHQESKKGSEEDPPVPME
FT                 VDNSSKFRQRTEFGNNQNLRSHPQKRANTSERFTGARRQRVNNIAQNNSAD
FT                 EDQKYKEAAENAVACIDDETESIDLNDSLNFLGNAPGCRSLNDSWLGEP"
FT   CDS           1489..4590
FT                 /product="Gypsy-9_DHyd-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="FVEFFRERSRLPFIKRQLAGRTLNILIDTGAAKNYIR
FT                 PVKELKVVTPADKPFTVSSIHGSSKVKNKCLVKIFEQTSPFFLLDTLTLFD
FT                 AIIGFDLLTQAGVTLDLQDNTLKYLDKQEKLGFYECSNVNFTNVNDIVVPR
FT                 SVKKEFRDMIIKRKKAFSTSNEALPFNTSVVATVRTRDSEPIYSKWYPLPM
FT                 GVSDFVNKEIECLLKDGIIRPSRSPYNSPVWVVDKKGTDSNGDKNKRLVID
FT                 FRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQILLAEQDRE
FT                 KTSFSINGGKYEFCRLPFGLKNASSIFQRAIDDVLREQIGKTCYVYVDDVI
FT                 VFSENEIDHVKHVDTVLKNLCDANMRVSQEKTQFFKESIEFLGFLVTKHGI
FT                 KTDPEKVKTIQEYIEPKSLYSLRSFLGLASYYRVFIKDFASLAAPLTNILK
FT                 GENGKVSKHMSRKVGVNFDETQRNAFQKLRNILASEDVCLVYPDFGQSFDL
FT                 TTDASMSGIGAVLSQGGRPITMISRTLKTSETHYATNERELLAIVWALGKL
FT                 RNYLYGAQDIKIFTDHQPLTFTVSEKNTNAKIKRWKAFIDEHNATVLYKPG
FT                 KENFVADALSRQNINALQNELQSDAATIHSELSLTYTIETTDKPINCFKNQ
FT                 IILEEACFPLQRKKILFGQKIRHLVSFTDKNSLIETIKPLIVTDAVNAFHC
FT                 DFPTLASFQHILVSSFPATKFWHCKNYVLDISDRNEQIEIILTEHNRAHRA
FT                 AQENIKQVLRDYYFPKMSNLAKEVVANCKVCTKSKYDRHPQKQELGATPIP
FT                 SYAGEILHIDIFATDKKLFLTCIDKFSKFAVVQPLPSRAAIDVKTPIIQLI
FT                 NIFPEIKTLYCDNEAAFNSEMITSFLKNSYNIDIINAPPLHSSSNGQVERF
FT                 HSTLADIARSLRLDGKASETTELILRATVEYNKSIHSVTNQKPIDIIHATS
FT                 TEVRLSVKKKIQKAQQAVLNRCNPDRQNRVFEVGETVFLKNNKRLGNKLTP
FT                 LCSEEKVEADLGTTVLIKGRVVHKDNLK"
XX
SQ   Sequence 5994 BP; 2055 A; 1377 C; 1200 G; 1362 T; 0 other;
     ggcgcccaac aaaacagtct acgaacccac attatgtctc agttaatgta agttcataaa        60
     gttttaattt caagtcaaac cacacattaa gtgaaacgaa tagacaaaaa aaaaacaagc       120
     aaacacaagt ttatcatgtt ctttgccaag ttagccatta aataaaaaat aaagcttgta       180
     aaaacacagc agtgattgat ttgtttcagt gcagttccgt aaatcaatga gccgctttga       240
     ttcaaatagg caaataaaaa cagaaatccc tagtgacgaa gagtgggata cagaccccga       300
     agttaatcag acacaaaact taagcaacct aataatgaat acggaacagg ttcaagccct       360
     aataaatagc gccttacagt gtcaagaggc tagacatcga ctggaattaa atcagttaca       420
     acaacaatta aatagcttgc gaatagaagt gcctcaggta gaaacatacc aaaggatatc       480
     ggtagaccca aacgttaggt gtgacctacc acttgacata ataaaatcgg tacccgattt       540
     taacggcata ccagatgaat acgtagcatg gaggcaatcg gccaccgatg cctacgaatt       600
     attcagaccc tacgagggca gtgctaacta ttaccaagcg gtaacaatta tccggaataa       660
     aatccgagga ccagcaagag cactgttagt ttcgcacaac actgtgctaa attttgaggc       720
     tataatagct aggctagatt gcacctatgc agacaaaact tcgctacgcc tcttacgaca       780
     aggattagaa ttggtcagac aaggtgacct aagcctcatg agctactatg acgaagttga       840
     acgaaagtta tctttggtca cgaacaaaat cgtcatgtct catgagcccc aacaagccat       900
     actgcttaat gatgaggtta gatcggatgc tctacatgca ttcatctcgg gtctaagaaa       960
     gaacctaaga gcagccgtgt ttccagcaca gccaaaagac ttaccgtctg cattagcatt      1020
     agccagggag gccgaagcta gtatcgaacg tagtgccttt tctgcttcat acgctagagc      1080
     gctagaagaa agagctcagg cgagcgaggg caacaaatac cgctcacaca ataagcaagg      1140
     caaaaataat agggacaaca aggatcaaga aagaaaccct cactttgtaa aaaaacagca      1200
     gaaccatcag gagagcaaga aaggtagcga ggaagatcca cccgtgccaa tggaagtcga      1260
     taactcttcc aagtttagac aacgcacgga gttcggaaat aatcagaact tacgttcaca      1320
     cccccagaaa agggcaaaca cgtcagagcg ttttacaggc gccagacgac aacgtgttaa      1380
     caatatagct caaaacaact ctgccgacga agatcagaaa tacaaggagg cagcagaaaa      1440
     tgctgtagct tgtattgacg acgaaaccga gtccattgat ctcaatgatt cgttgaattt      1500
     tttagggaac gctcccggct gccgttcatt aaacgacagt tggctgggag aaccttaaac      1560
     attttgatag ataccggggc ggctaagaac tatatcaggc ccgtaaagga gctaaaagta      1620
     gttacaccag ccgataagcc cttcactgtg agctcgatcc acggctccag taaagttaaa      1680
     aataaatgtc tggtcaagat ttttgagcag acatccccct ttttcctgtt agacacactc      1740
     accttgttcg acgccattat aggcttcgac ctgctaacgc aggcgggagt cacgttggac      1800
     cttcaggata acaccttgaa atacctagac aaacaagaaa agttaggatt ctacgagtgt      1860
     tctaatgtca atttcaccaa tgtgaacgac atagttgtac caagatcggt aaaaaaggaa      1920
     ttcagagaca tgatcataaa gaggaaaaaa gcgttctcga cctctaacga ggcgttacct      1980
     ttcaatacct ctgttgttgc cacagttaga actagagaca gcgaaccaat atactccaag      2040
     tggtaccccc tgccaatggg cgtatctgac tttgtaaaca aagaaattga atgtttactc      2100
     aaagatggta taatcagacc atcaaggtca ccgtacaaca gcccagtctg ggttgtcgac      2160
     aaaaaaggga ccgacagcaa cggcgacaaa aacaaacgcc ttgtgataga ctttagaaag      2220
     ctaaacgagc gaactattgc cgaccggtac ccaatgccta gcatccctat gattctagcg      2280
     aacctgggaa aggcaaaatt ttttacaacc ctggacttaa agtcgggtta ccatcaaatt      2340
     ctcctcgcgg aacaagaccg tgaaaaaaca tcattttcaa ttaatggcgg caaatatgag      2400
     ttttgtcggt tgccctttgg cctcaagaat gcgtcaagca tttttcaaag ggctatagac      2460
     gacgttctaa gggaacaaat agggaaaact tgctacgtat acgtagacga tgtgatagtt      2520
     ttctcagaaa acgaaatcga ccatgtaaag catgttgaca cagtgctaaa gaacctgtgt      2580
     gatgccaaca tgagagtgtc acaagagaaa actcagtttt ttaaagagag cattgagttc      2640
     ttaggctttt tagtgaccaa acacggcata aaaactgacc ccgaaaaagt caaaaccatc      2700
     caagagtata ttgaaccaaa gagcctctac agccttaggt ctttcctcgg cctggccagc      2760
     tactataggg tcttcataaa agattttgca tccttagcag ctcccctaac aaatatactc      2820
     aagggagaaa atggcaaagt tagtaaacac atgtccagga aagttggggt aaacttcgat      2880
     gaaacccaac gtaacgcctt tcaaaaatta cgcaacattc tggcatcaga agatgtctgc      2940
     ctcgtgtatc cagatttcgg tcaatcattc gacctaacca cggatgcatc aatgagtggc      3000
     attggagctg tcctttcgca agggggcaga ccaataacca tgatttcaag aactctcaaa      3060
     actagcgaaa cgcactacgc gaccaacgag agagaactgt tagccatcgt atgggcgcta      3120
     ggtaaactgc gtaactacct atatggtgcc caagatataa aaattttcac ggaccatcag      3180
     cctttgacat tcacagtttc cgagaaaaat actaacgcca agatcaaaag gtggaaagcc      3240
     tttatagacg aacacaacgc gacggtactt tacaaaccag ggaaagagaa ctttgtggct      3300
     gacgcccttt ctaggcaaaa cataaacgcc ttacaaaatg aacttcaatc ggacgctgca      3360
     acgattcaca gcgaactctc tctgacctac acgatcgaaa cgaccgacaa accaataaat      3420
     tgttttaaaa accagattat cttagaagaa gcgtgtttcc cattacaacg caaaaagata      3480
     ctttttggcc aaaagattcg ccacctggtc agcttcactg acaaaaattc attaattgaa      3540
     acaataaaac ctctcattgt tacagacgca gtaaatgcct ttcactgcga ctttccgaca      3600
     ctagccagct tccagcatat tctagtttca agcttccctg caaccaagtt ttggcactgc      3660
     aagaactatg tgctcgacat ttctgataga aatgaacaga tagaaataat attgacagaa      3720
     cataaccgag cgcatagagc agcacaggaa aacattaaac aagtccttcg tgactattat      3780
     tttcccaaaa tgtccaacct agccaaggaa gtcgttgcaa attgcaaagt ttgcacaaaa      3840
     tccaaatacg atagacaccc gcaaaaacag gaattgggtg ccactccaat cccttcatac      3900
     gcaggcgaaa tattgcacat cgacattttt gccaccgaca aaaaactatt tctaacttgc      3960
     attgacaagt tttcaaagtt tgccgtcgta caaccactac cgtctcgagc agcaatagat      4020
     gtaaaaacac ccattattca gctaataaac attttccctg aaatcaaaac actctactgt      4080
     gacaatgaag cggcattcaa ctcagaaatg atcacatcat tcctgaagaa cagctacaat      4140
     atagacatta taaatgcacc accgcttcac agcagttcaa acggacaagt agagcggttc      4200
     cacagtaccc tggcggacat agccagaagc ctgaggttag atggaaaagc cagcgaaact      4260
     actgagctga tattgagagc aacggtagaa tataataagt caatccattc ggttacaaac      4320
     caaaagccga ttgacatcat acatgccact tcaacagaag ttagactatc tgtcaagaaa      4380
     aaaattcaaa aggcacaaca agccgtactc aacagatgca atccagacag acagaacaga      4440
     gtgtttgagg taggcgaaac ggtgtttcta aaaaacaaca agagacttgg aaacaaacta      4500
     acgccattat gctcagaaga aaaggtagag gcagacttgg gaaccacggt tctcattaaa      4560
     gggagggtgg tccataaaga caacctcaaa tagtaactaa ggataggcac taagacacaa      4620
     taggttattt ttcgcactgc ttactcttta caggcgtacg cttatgcttt tatccttgct      4680
     agtagtagcg aactcccgga tcaccgatta ctcgcgctca aattacattc ccatactaga      4740
     cgggaacgta cttatttggg aacaacaaag ttttattaga ccttctggca acctgacaga      4800
     agtgaccaag agagtagatg aaaccgtaaa attgtccgat ttatttccgc agtcgcatat      4860
     gcgaaagctt ctaagtgttg atatagataa tactagaagc ttgttgtccg tggtaaagat      4920
     acatcataga atggctagga gtttagactt cctaggcaca gcattaaaag tagttgcagg      4980
     aacgccagac gcataggatt tcagcagggt cagactatcc gaatcaaagc tgattgactc      5040
     gaataacagg caaatagtta taaattccga aacacaaaaa caaatcaatc aattaacttt      5100
     accgtgaacg aaattataaa ggctagaaaa gccgacttcg tagactcgcc acatttgtat      5160
     gaggcactct tggcaaggaa tagaatgatt accacagaaa tacaaaattt aaatctcacg      5220
     atcactctcg ctaaatcagg cattgtaaat cccacaattt ttaatcacaa tgacttgaaa      5280
     tcattactta atgaacaccc cccagaagtc cccatagtta gcctgatgga agcttcttcc      5340
     ataaaagtcc gtctgcaata agataactgt ctatcccgta ccgcatcact acatcatact      5400
     acagctccaa gataacatcg tagttgactg tgacggtgac atcctggcga cctcggattg      5460
     tactacaacc aattttggcg cggtctgtaa gagagcaaaa ggcgaagcgt gcgctcgagc      5520
     cctacatgcc ggaagaacgg cgaactgccg gtctcaaccc agcaacctga gacccatcac      5580
     cgaagtagac gacggcgtaa tcaacatcaa tggcacgtat ctcatcacct ttgagcgctc      5640
     cgctataatc aacgggacga gaatcattga ccaacatgag acgttaaaaa agagtccagc      5700
     cgtagcaggg tctccgcttc tcaacatcat aagccatgac ccagtgctaa gcttaccgca      5760
     actccatcgg atgaacgacc acaacttaca agtcatcagt gagtttaaag aggaactgga      5820
     gtcatccgga tcccaagcta actggctcat cagcggtata atcttgggcg tcgccctcag      5880
     ctgcatcctc gtgagctatc acctctacca acgcagacaa gcatcaaaaa tacttcagga      5940
     aaccatcaat aagtacaatg taaccgaggc cggtcacgaa cttagtgggg gggt            5994
//
ID   Gypsy-9_DHyd-LTR repbase;    DNA;    INV; 458 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila hydei genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DHyd-LTR.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-458
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2423-2423 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 458 BP; 116 A; 107 C; 90 G; 145 T; 0 other;
     agttaacaag taaccctcgt tactgccctc gcatgcgcat tccgctgacg cgccagagtc        60
     agcgcaatgc ccttacaaag tcagcaccgg taacatgatg cttgacgttg cgcagttaga       120
     tttgtttaac agttatgctg agtcggcgcg tcgatcgaat tcttgtagct taagaataac       180
     tgtagtttgt agcttttgtc tcttttagct ttgatttcgt tttagtttta ctttaagtac       240
     agtcttgttc aagagtttaa cgaataaaca cacattgctc cggcacactg ccgttactga       300
     aatcattttg ctgatttata tattgctgag ccacaaggcc tgtaatttgg atatctcaat       360
     tatatcccat cataatctgc ctatcaattt gatctacatt gtgccccgaa cgacggcttc       420
     ccctaacgcg gaccctggac ggacggaaca taataatt                               458
//
ID   Gypsy-9_DMel-I repbase;    DNA;    INV; 7748 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion, a sample
DE   sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DMel-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7748
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1036-1036 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 98% similar to each other. This is a sampled sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           1567..2679
FT                 /product="Gypsy-9_DMel-I_1p"
FT                 /translation="MSKKLVYNLRKTTRSVVGASSSTSKFPHSTRRSDPLL
FT                 PISEEPRPIPYQKPTMDSGNDSGRPTPPPLTPTVSGLSSVISTTFKPKDIM
FT                 AFVEHLPTFDGTPRQLDRFITSVEEILMLIRGADQTPYGLLTLRTIRNKII
FT                 DRADEALELANTPLVWDKIKNNLIRLYSSKKSEANLLSELSTFSDNQTLGQ
FT                 LFFGISKVRSQLFSVLKNSEHNNTVIDAKKVVYNEVCLNAFITGLREPLKT
FT                 FVRLKSPSTLEQAYEQCQIEQTLYRAQNNRSNRTEQGSNGSDGRNQRNNND
FT                 TNNRNGRNDRNDRRRPYSNSYQNRSSNSYNRTPQSSNNDNQASTSNPFRTT
FT                 PHSLNNIEENPQPNPNFQQPASGSQQGT"
FT   CDS           6322..7746
FT                 /product="Gypsy-9_DMel-I_3p"
FT                 /translation="MEQFYQTINGFHPDTTLGDSVTILKAKLNQAQVKLKA
FT                 LTPLNRNKRGLVNGLGSLVKVVTGNMDANDDKEIHEELSNIKKNSKIANDN
FT                 FLNQELFNNEILTRFENITNHINNEQILISKFLENSQNKIYKQLDMHDSLL
FT                 EEMQYLNRINYNVELFTNHLNDITESMLLAKLNIIPKFILNEQEMDKIKNI
FT                 LEKQNVTIKNEQNIYNYLRINTLSYEQKIIFNIKVPIFKQPGYALARLVPL
FT                 PINNTYFIITPNYLAYNTNNKKYHMTRKCPKLDGTFLCDEDFVIDTPQNNT
FT                 CLTNLLNGENSSCNVRETGPIIDVFEAERGYIFAFHVNNMKISLTNGSELC
FT                 ITGSAIIRYINETIQINGIDYDGTDDTFPEQLDFALPPVREITKNTTIMVL
FT                 SLEKLHLETAQTMGKILPVHNITTRHTWTLYTLLGLVASLAIILWLHRRTK
FT                 HIVHVHEDHRLPIYAPSIPSLWPSLRTGEG"
FT   CDS           join(2918..3343,3347..3763,3736..4230,4337..4678,
FT                 4682..5770,5718..6116)
FT                 /product="Gypsy-9_DMel-I_2p"
FT                 /translation="MTLLPFKFHSYFDGLIGMDLLSYLKIEIDLPNLKLKT
FT                 PSTTIPLWIHSNLTSNIFNISGHTKTVLSLPVETRQGDFYIDPILINDDLI
FT                 ISDGIYTSQNNTANFVITNYSDVDQLLYLESPIKGTPYSTVDSVELFNITS
FT                 TSPPQDFATSLQTLCTENLSPEEKQGLLSLCNKFIDIFYNEDEPLSFTNKI
FT                 THAIKTMDNIPIHTKSYRYPYIHKEEVKKQIESMLNQDIIKSSYSPWSAPV
FT                 WVVPKKITPTGEQKWRLVIDYRKLNEKTISDTPYPTLQTSYPIPNIADILD
FT                 RLGKARYFSTLDLASGFHQIEMNPDDIPKTAFTVEGGHYEFIRMPFGLKNA
FT                 PATFQRVMDNIFGALIGTICLVYLDDIIIFSTSLQDHLIHLKTIFERLRSA
FT                 NFKVQLTKSNFFRKETEFLGHIVSQETLIKSKLLRIFHVLIAKKQLSLYSV
FT                 CRTLLSNDPILQYLDFTKPFTLTTDASNFAIGAVLTQGPVNSDKPVCFASR
FT                 TLSTAETNYSTVEKEMLAIIWAVQYFRPYLFGKRFTIVTDHKPLTWLMNFK
FT                 QPNFKIIRWRLQLEYDFEVVYKKGSQNVIADALSRPEISINHSEILTTPQT
FT                 VCPISEKPLNDFNIQLLFKIAPNTNYITVTPFKHKIRREFCRPDFQYDDIV
FT                 NILKQSLKPNKTCAAFAPDHVFLMVEKAYQTYFSTNNTLKLIRCLSFLREI
FT                 TDSSEIEKIITDYHVNSNHRGVDETYLHLKRQQFFPHMKEKITRLIRECET
FT                 CLKLKYDRQPQKTSYLIPEIPSKPLDILHIDIYTINKNYNLTIIDKFSKFA
FT                 AAYPIANRNCINVVKALKHFISQFGIPKKLVYDQGAEFASDMFNKFCTQFN
FT                 IDLHVTSFQQSSSNCPVERLHSTLTEIYRIVLDARKQQKLNTEHDELMSEV
FT                 LITYNNAIHSATKHTLRTILHTITQSILRLNILFELFNGRTHIFNQAIKFN
FT                 SEHDYLTKLNEFREKLNPTVAEKLSNNVIKRTLKLNETRTDPITLQPDTLI
FT                 LRKQNRRNKITPRFSIHKVKHDKGRTLITTKNQKTTQIKNSKDSSKKRKK"
XX
SQ   Sequence 7748 BP; 2738 A; 1820 C; 1198 G; 1992 T; 0 other;
     ggcgcagacg gtaggatgaa tttcctaacc gtaatcactt acttgtaagt aggaaaaaat        60
     gtaagaaaag aaacaaagta tatttaaatg tcgacaacaa acatacacac aaatctaaac       120
     cccaacccac cataatgaca cggaatcacc ttgtcaccga tttggtctta tgccatccaa       180
     cacatcttag ttttcatttg ataagtgcaa gtgtgagtgc tgccatagtg acgtagtgac       240
     gtggaatcaa acgatgataa ccatgtcgct ggtatacata catatataca ctcgaataca       300
     tgacatcaaa taccatacaa cacactcatg caccatattg cctcgctgtc gtggaatcta       360
     ccgctgatca tcacgtcatc ggtacttaca tacgctgcca aacatcaaat tttcattaaa       420
     aggtgcaagt gtaccgtgct gccgcgctga cgtggaatct atcgctgatc atcacgtcat       480
     cggtacgtac atacgctggc aaatgtatcg ccaaaagcct ctttatatac ttatacattc       540
     gaacatacaa tatcaaatta aatacattca attacacata cacccaaaat actctaccgc       600
     acttggttac atacaacact gtacaatgta accacagcag cgcgaaatca aacgctgatc       660
     gttgcgctgc tgtgctatat acaaacgtat cgccaaaaac tcttctcact catgtgccgt       720
     attgccgcgt tagtgtgaaa tcaaacgctg atcatcacac tgacgacgac tatacatgca       780
     cgcaaaatac tttatcgcat tcgcttacat acagcgccat aaaatgtagc cactttggta       840
     tggaatcaaa cgttgatcat cataccactg tgacataaac aaattaagca ctcaagcttc       900
     tttaacacat ttgcatactc acgaacacac tgccatacaa cggcgaagaa ccaaaacgca       960
     gatactccca ctgtcaaaac ataaacacat atcatatttc ggaccaaaca agtcgcattg      1020
     agcgtatctt agcaacaaca atgctacatg ggtggttgcg gacccatgcc aggggagtcg      1080
     aagtaagggg tgaacgcttg agtatcgtca agttacttcg cttttcgatc ccctgcgaag      1140
     tgtcgcgtca ctcatgaagg ccactttaaa taacagaaca tacatgaaaa aaaaagggaa      1200
     agaagtcgac atatatttat actttgttcc ctttcgtaat gcaatttctg tacataaata      1260
     tatattaata ccaataacat tgcagagcct gataaagagt atagaggacg cacaaacaaa      1320
     cacacatata gtacaaataa gtaattacat acgaaactca aaaatcatac tctgtacact      1380
     taaaatatcc taaaataagc acaccatcca aatctaaaac acactatata cacatacata      1440
     catactaaat aagtacataa cccacaattg aactacatta taagcctacc cactcatttc      1500
     cctgaggtag aaaacttgtt cattgttttt cggtcataca cgataaaccg agtaacttaa      1560
     aatttaatgt caaaaaagct agtttataac cttaggaaga ctacgcgttc tgttgtcggg      1620
     gcttcatcat ccactagtaa gtttccccac tctaccagac gttctgaccc gcttctcccg      1680
     atttcagaag aacccaggcc aattccctac caaaaaccta caatggactc aggcaatgat      1740
     tctggccgtc ccactccacc tcccttaaca cccactgtca gtggattgag ctcggtaatt      1800
     tcaacgacat tcaagcctaa agacattatg gcttttgttg aacacttgcc aacttttgac      1860
     ggtactcccc gtcaattaga cagattcatt actagcgtag aagagattct aatgctaatc      1920
     aggggggcgg atcagacgcc atacggctta cttaccttga ggaccattag aaacaaaata      1980
     attgatagag ccgacgaagc cctagagctc gcaaatactc ccttggtgtg ggacaagata      2040
     aagaacaatc tcatccgcct ttattcgagc aagaaaagcg aagctaactt gctaagtgag      2100
     cttagtacat tctctgacaa ccagactttg ggccaactgt tctttggaat atcaaaggtg      2160
     agaagccaac tcttctccgt acttaagaac agcgagcaca ataacaccgt tatagacgcc      2220
     aagaaagttg tctataacga agtctgcctc aacgctttta tcacaggttt gagagaacct      2280
     ctcaaaacgt tcgtcaggtt aaagtcccct tctactctcg aacaggcata cgagcaatgt      2340
     caaatagagc agaccttgta tagggcacaa aataaccgtt ccaatagaac agagcaggga      2400
     tcaaatggat cagatggtag gaatcaacga aataataacg acactaacaa ccgcaatgga      2460
     cgtaatgacc gaaacgaccg tagaagacca tattccaact cttatcagaa tagatcatct      2520
     aattcgtaca accgtacacc ccaatccagt aataacgata accaagctag tacatcaaac      2580
     cccttccgaa caacgccgca tagtctgaac aatatagagg agaaccctca acccaatccg      2640
     aattttcagc aacccgcctc gggaagccaa cagggtacat aagcccggcc acgcacagtt      2700
     cctctcttcc tttcattaaa atcaaacttc cccatacaaa ccctctgaaa ttcctgatcg      2760
     acacagggtc tacacactcc tttattgacc caaaatatgt tgaccctcga aactgtgcga      2820
     ccttacaaac gcctataata cttaagacag ccctaaacaa ttttactatc caccaacatg      2880
     gtggaatttt ccacccgaat ttcaaatcac aggcgaaatg actctccttc ccttcaaatt      2940
     ccactcttat tttgacggat tgataggaat ggacttatta tcttacttaa aaatagaaat      3000
     agatttgcct aacttaaaac taaaaacccc aagtaccact atacccttat ggatccatag      3060
     taacttaact tcgaacatat ttaatatctc tgggcatacg aaaactgttt tgtcactacc      3120
     tgtggaaacc agacagggcg atttctatat cgaccccatt ttaatcaatg atgatttaat      3180
     aatatcagac ggtatttata cctcccaaaa taatactgct aatttcgtta tcacaaacta      3240
     tagcgatgtg gaccagctgt tgtatctgga aagcccgata aaaggtacgc catactccac      3300
     agttgatagc gttgaacttt tcaatatcac ctcaacttcc ccataacccc aagactttgc      3360
     aacatctctg caaacccttt gtaccgaaaa cctatctcct gaagagaaac aaggtttact      3420
     ttcactttgc aataaattta tagatatctt ctataacgaa gacgaaccac ttagcttcac      3480
     taacaagatt acacacgcca tcaaaaccat ggacaatatc cctattcata caaaatccta      3540
     taggtacccc tacatccata aagaggaggt caaaaagcaa atagaatcga tgctaaatca      3600
     agatattatc aaatctagct attccccgtg gagcgcccct gtctgggtcg ttcccaaaaa      3660
     aattactcct acgggagaac aaaaatggcg tctcgttatc gattatagaa aactcaatga      3720
     gaaaactata tctgataccc catacccaac attgcagaca tcttagacag attgggcaaa      3780
     gctaggtact tttctacgct tgatcttgca agtggatttc accagataga aatgaaccct      3840
     gatgacatcc ccaaaactgc atttacggta gagggaggtc attacgagtt cattaggatg      3900
     ccgtttggcc tcaaaaatgc tccagccacc ttccaaaggg tgatggacaa tattttcggg      3960
     gcccttatcg gaaccatctg cttagtctat ctggacgata taataatctt ctcaacctcc      4020
     ttacaggacc atcttataca cttgaaaact atttttgaaa gacttagatc tgctaacttt      4080
     aaagtacaac ttaccaagtc caacttcttc agaaaggaaa cggaattcct tggccatatc      4140
     gtttctcaag aaaccctaat aaaatcgaag ctattaagaa ttttccatgt cctcatagca      4200
     aaaaaacaat taagtcttta ttcggtttgt taggctacta caggaaattt attagagatt      4260
     ttgcaagact tacccaacct atgacgaaaa aattaaaagg caacaataaa tctattataa      4320
     tagatgatga gtttaaagaa ccctactttc taatgaccca atcctccaat acctggactt      4380
     tactaaacct ttcacattaa ccacggacgc aagtaatttc gcaataggag ctgtcctaac      4440
     tcagggtccc gtcaacagcg ataagcccgt atgttttgct agcagaacct tgtcaactgc      4500
     agaaacaaac tactccacag ttgagaaaga aatgctagcc attatttggg cggttcaata      4560
     cttcagacct tacctctttg gcaaaaggtt tactatagtc accgatcata agccattgac      4620
     ttggttaatg aacttcaaac aacccaattt taaaataatt cggtggagac tccagcttta      4680
     agagtacgat tttgaggtag tatataaaaa ggggtctcaa aatgtaatcg ctgatgccct      4740
     cagccgacca gagatctcca tcaaccattc tgaaatatta acgactccac aaaccgtttg      4800
     ccctatttcg gaaaagcctc ttaacgattt taatattcaa ctccttttta aaatagcccc      4860
     aaatacaaac tatatcacag tgaccccgtt taaacataaa attaggagag aattctgtag      4920
     acctgatttc caatatgacg acatagttaa cattcttaaa caatcactta aaccaaacaa      4980
     aacatgtgca gcattcgccc ccgaccacgt ttttctaatg gtggaaaaag cctaccagac      5040
     ctatttctcc accaacaata cgctcaaact tattagatgt ttgagtttcc tccgcgaaat      5100
     aactgatagt tcagaaatcg agaaaattat aactgactat catgttaata gtaatcatcg      5160
     tggagtcgac gaaacatact tacacctaaa acgacaacaa tttttccctc atatgaagga      5220
     gaaaattact cggctgatca gagaatgtga gacatgtttg aaattgaaat acgacagaca      5280
     accccaaaag acttcgtatc taatacccga aattccctca aaaccattgg acattttaca      5340
     tatagacatc tatacgatta ataaaaacta caaccttacc attattgaca aattctccaa      5400
     atttgcagct gcgtacccta tagccaatag aaactgtatc aacgtagtta aagcgttaaa      5460
     acattttatc tcccaatttg gtattcctaa aaagctagtt tatgatcagg gagcagaatt      5520
     cgccagcgac atgttcaaca aattctgtac tcaatttaat attgatctac atgttacgtc      5580
     tttccaacaa tcttctagta actgtcccgt tgaacggcta cactcaactt taactgaaat      5640
     ttacagaata gtacttgacg ctaggaaaca acagaaactc aacaccgaac atgacgagtt      5700
     aatgtcagaa gttctaatta catacaataa cgcaatccat tctgcgacta aacatactct      5760
     tcgaactatt taacggacgc acccatatat tcaatcaagc gatcaagttc aacagtgaac      5820
     acgactactt aacaaaatta aacgaattcc gcgaaaaact taaccccact gttgcagaaa      5880
     aactttcaaa caacgtaatt aagagaaccc taaaattaaa tgaaactaga acagacccta      5940
     taacccttca acccgacact ctaattctta ggaaacaaaa cagacggaac aaaattacac      6000
     ctaggttttc cattcacaaa gtcaaacacg acaagggtcg cactttaatc accactaaaa      6060
     accaaaaaac tacacaaatc aaaaattcga aagatagttc taaaaaaagg aaaaaataat      6120
     ttacttaaca ctgatgacaa ttgaccccat gccttcttaa tttaccattt cagattcacc      6180
     ttcgggtcga ctaaagccat ttctatccta tacccaaacg ataatacccc tatagccaga      6240
     ttagaactag gtaaagctct actaactgac agatacaaaa taattagtca tgttattaac      6300
     ttacaagact ataacaaatg tatggaacaa ttttaccaga ctattaatgg atttcacccc      6360
     gataccactt taggagattc tgtcactatc ttaaaagcca aactaaacca agcccaggtc      6420
     aaactcaaag ccttaacccc acttaataga aacaaacgtg gcttggtcaa cggactgggt      6480
     agtcttgtaa aggttgttac tggtaacatg gatgccaatg acgataaaga gatccatgaa      6540
     gaattaagca atataaagaa aaattctaaa atcgctaatg ataacttcct aaaccaagaa      6600
     ttgtttaaca atgaaatact tacccggttc gagaacatta caaaccatat aaacaatgag      6660
     caaattttga taagtaaatt ccttgaaaac tcacaaaata aaatttacaa acaattagac      6720
     atgcatgatt cccttctgga agaaatgcag tacttgaaca ggattaatta taacgtagaa      6780
     ctatttacca atcacttgaa tgacataacg gaaagtatgt tattagcaaa attaaatata      6840
     attcccaagt tcatcctaaa tgaacaagaa atggacaaaa taaaaaacat tttggaaaaa      6900
     caaaatgtta caataaagaa tgaacaaaat atatacaact atctaagaat taacacgcta      6960
     agctacgaac aaaaaataat ttttaacatc aaagtaccaa tatttaagca gcctggctat      7020
     gcccttgcaa gactagttcc actacccata aataacactt attttataat taccccaaac      7080
     tacttagcct ataatactaa taataagaaa tatcatatga cacgaaaatg ccctaagctg      7140
     gatggcacat tcttgtgcga cgaagacttt gttatcgaca caccccaaaa taatacgtgc      7200
     ctgacaaatc ttttaaacgg agaaaacagt tcctgtaatg tgcgggaaac cggccctatc      7260
     atcgatgtct tcgaagcaga gagaggctac atcttcgcgt tccatgtaaa caatatgaaa      7320
     atatccctaa ctaacggctc tgagctctgc ataacggggt cagccatcat cagatatatt      7380
     aatgaaacga tacaaattaa cggtatcgat tacgatggca cagatgacac ctttcccgaa      7440
     caactggatt ttgcccttcc acctgtgcgc gaaataacta agaataccac cattatggta      7500
     ctaagcttag agaaacttca tctcgaaacc gctcaaacaa tgggtaaaat cctgcctgtc      7560
     cataacatta caacacgaca tacctggaca ctctatactc tgcttggact ggtagcatcc      7620
     ctggcaataa tcttatggct acaccgacga acgaaacaca tcgtccacgt ccatgaagac      7680
     caccgcctac cgatctacgc gccgtccata ccttccctat ggccgtcgct tcgaactggg      7740
     gagggagg                                                               7748
//
ID   Gypsy-9_DMel-LTR repbase;    DNA;    INV; 466 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 24.06, Created)
DT   08-AUG-2018 (Rel. 24.06, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DMel-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-466
RA   Bao W.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 19(6), 1033-1033 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
SQ   Sequence 466 BP; 144 A; 136 C; 78 G; 108 T; 0 other;
     agttaccacc ccacccccta aacctccacg cctctaacgt tgtcggacac cgaaccggga        60
     aggcgaacaa ctagagcacc gcatccggcc aagtgctgac ttcgcgtaca aagttgcaca       120
     gcaacattgt ctgcaaggga ctcggtcagc cgaatgctga agcggcacaa aaattatgtt       180
     tatgtttaca tttaagaacc tatgtactct taagaacaaa acacttatgt acaaaacaga       240
     gagctagagg agacttctcc aaaagaataa acttcactct ggttttgagc tccaacagac       300
     tcagtcgtgt tcatcttttc cccgtttgcc aataacttcc atttgtgcct acatatatac       360
     atatatgcac aactaaaacc ctacatactt accaaccata cacactcatc aaccaaagga       420
     cgtaggacgc cccactggct tccccctcgt gtccacactg ataact                      466
//
ID   Gypsy-9_DMo-I repbase;    DNA;    INV; 6861 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   27-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DMo-I.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6861
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6861 BP; 2646 A; 1445 C; 1136 G; 1634 T; 0 other;
     ggcgcccgag cagggacccg cgttcgttac cacagaaaag tttacgcgtc gaaaaacata        60
     gtaccaacta ttgttcgcga gagcacctat aacgaaatat agctgctagt gaacgcgacg       120
     aaaatcttta gtgcctaatc cgcagctact gaaaccggag cattcgaacg ttaatattag       180
     tgcctaatcc gcagccacat cgtgaacgag tgactctaac tacgtaaacg tggtacgttc       240
     gtcggtcaaa aaaaccattg ttgccaccct ataagtgtcc gtccgtaggg taccgcgtaa       300
     tcggagtgcg tcgcaggatc ttcagtaacg gataaaccac tagcactgga atctgaggga       360
     agagagaaat ccggaccacc atcgcgggag tcaacaatgc tgaaaattat cttgtaagca       420
     tagtaaataa gatttgaaaa caaaaataaa gaaactagaa aagaaaagaa ttaaaacaaa       480
     tcaagaaata ttagtaatta agaaaagaaa aacaagaatt aaacaacaaa tattaacacc       540
     tagtaagaag aaataacaag aaatattaaa cattaacact taataattaa gaaaaactct       600
     gaaattgtac tactgagcga taattgcgtt gctcggtata gcgtatagcc cgtcaagcta       660
     tacaataata gccaggaaga tcactgcgtt gatcgcttag gaatttacca tttactaaca       720
     caaaatcaaa atcctgagaa cattttctga aaacaaacca ccatcatttt ccgcttcgat       780
     aaaaattctt taaatctgtc cgtgaccatt gacgaactaa cgaccgcatt ctctaagata       840
     aacatgccac caccagaaaa tacactcccg tccaccagca caggtgccac aaggcaaacc       900
     tttctgactg aaccaattga gaatacgata gagagatacc ttaggaagat attgtccgag       960
     aaaggcgatg agttacttaa aacaggtaca accgtttcag ttgagcaaga tcagacgatt      1020
     ctaccagaac atatgggacg aatcaacgag ttagacaagt tgccagacgt tgtaagggtt      1080
     ttaaaagact tttccgggaa tagagcagaa ttcacttcat ggcgcaaaag cgtagacagg      1140
     atattcgagg catactctac cgtacaggga acaccaaagc actatggtat cttaatggta      1200
     gtaagaagca aagtagttgg cgaagccgat gctgtattag aagcatataa cacaccacta      1260
     aattggaagg ccatatctca atgtctcact gatcattttg cagaccgtag agatcttaag      1320
     acattagagt accaactcta tactcttaag caaaatggac gatcaataga cgaattttat      1380
     caagccgttt attatcatct gtctttaatc ttgaatcaga taaacaacca tgattcatct      1440
     gcagaaacag taagggccat taccgagata tatagagaca aagctttaga tacatttatc      1500
     agaggtctca acggagactt atcaagattg ttagccatca aagagccaac cgaccttaaa      1560
     catgcccttc acttgtgccg actgattgag aaccagtcga ttagagattc tgttagtccc      1620
     attagagccc cttcgcttcc tccgaagaac aattatcaaa acaaaactac tcaatccccg      1680
     tttcgataca acaatccaca cgtcttaaat caaaccaact tcaatccgaa cctgtactat      1740
     ccaccaaagc ctaagtttaa cccccagaat tcagtttttc caccaagacc catataccaa      1800
     caacaacaac aacaattctt taacgcaccg ccaagaccaa tagccccaaa gccacaaccg      1860
     gctccacaac caatggaagt cgactcttct atcagaacta ggaacgtgaa ttatatgaat      1920
     aggccaaata atagtcaatt tgctgggaaa agacccttat cttctagggc agaaaaccca      1980
     ttcaagcatc agagacaatt tcatatcaat actggggaaa cccaagtaga tgatgaggct      2040
     aacgcttacg cagatgcata tgcgaatgca tacgccgccg aagcttatgc cgaggcatac      2100
     gagcaatgta tgagtgaaca ggcttactat gctgctacag aggagcaagg tatcgtcgaa      2160
     gcaccatacg agaacgaagc aactacagac aaccagactc aggtagaaat tgctgatatg      2220
     tctgatgtca attttttagc ttaaatcgtt cctcgttacc ttacttccaa tgcaaaacga      2280
     gggacggaca ggtattaaac ttcctcattg atactggttc caaccagaat tacatacagt      2340
     cttccctagt aaacaacgca aaagaaaaca aagaagcttt tttcgctaat tctataggtg      2400
     gaaaaatagc cataacccat catatctttt tgaatctatt taacctcaaa actccaatca      2460
     gatttttcgt attgcccact ctaaaaactt ttcatggcat tctaggcaac gatacaatga      2520
     aacaactcaa tgttgttatt gatgtcagga atgatatcct tatagtaaat ggcagtaata      2580
     aattccgtat taagcaatta cccgcacaag cagttaacaa tataaaggtc cgaacaagtc      2640
     atatgtccga taaccagaaa aagataatag atcgacttat ttatgaaact aaaccgttat      2700
     ttgcagaccc agagcaaaaa ttaacttaca cgactaaagt agtaggagag atccgaacca      2760
     ataccgacac cccagtttac agcaggcatt acccatatcc tattgctcta aagcaagaag      2820
     tcgaaaagca gatatcagaa atgcttgacg acggagtcat tagaccgcct ctagatcacc      2880
     gtataacgct ccagtatgga tcgtaccaaa gaaatctgat gcctcaggaa aaaagaaata      2940
     ccgactagta atcgattatc gcaagctaaa tttggtcaca atctccgacc gataccctat      3000
     gccagaaata ggggacatca tagcccactt aggggacaat aaattcttca cggtcctcga      3060
     cctcaaaagt ggtttccacc aaattccttt gaaggagaca gacatagaaa agacagcatt      3120
     ttctgtcaac ggagggaagt acgaatttac aagactacct tttggtctca agaattcccc      3180
     ttcaatattc caaagagcct tagatgatat tctaagggat catgttggaa aaatatgcta      3240
     tgtctacatt gatgacatca ttgttttcag caaaactgaa aacgaacatg ctcatcacct      3300
     aaaacaagtc ttcacgactt tacttaacgc taatatgaaa gtccaaatgg acaaatgtga      3360
     atttttcaaa aaggaagtga atttcctagg attcaccatt tcagacagtg gcgttaagac      3420
     aaatccagaa aaggttgaag cgatttctag attccccata cccaaaactc ttaaagaact      3480
     acgatcgttc ttaggcctct ccggctatta ccgcagattc ataaaagatt atgcaaaatt      3540
     agctaagcct cttaccactc atctcagagg tgaagatggt cgtatatcag caaaagcatc      3600
     agataaagta cagataaagt tagataacaa ggcaatagaa gcatttaaca aaataaaaca      3660
     aactctttgt tctaatgacg taatcctaaa ttatccaaac ttctctaaag aattccatct      3720
     aacaaccgat gcttcaaact acgcaatcgg tgcagtcctt gaacaggaag gtagacccat      3780
     tacttttata tcacgaacat tgtcaaaaac agaggagaac tatgcaacta atgaaaagga      3840
     aatgctagcc atagtttggg cattgcaaaa ccttcgaatt tacttgtatg gaactgccaa      3900
     agttattata ttcacagacc accaaccaat aacctttgct ctgagtaata aaaatcacaa      3960
     cggaaaattg aaacgttgga agagttactt agaagagttc aattacgagt taaagtacaa      4020
     gccaggaacc actaacatag tagcagacgc tttatcaaga aacccaataa acgaaatcaa      4080
     tagtacagaa accacagtta tgagtgatga aagttcgtca cacaatctca tccctacaat      4140
     agaaacacct attaacgttt tcaagaatca gttattcata ataatcggcg aaaagcatga      4200
     ttataaattc gaaattccct ttcctacata ccataggcat acagtaacac aaccccactt      4260
     taccgaagac gaattaatcg atattttcaa gaaacgactt gacccaagac ttattaacgg      4320
     cttatttact ccagaacata ttatgggcaa aatacaggaa ttctatccac ttcacttttc      4380
     aaattataaa atacgatata cccaaagaaa ggtagaagac attacaagcg tcgatgaaca      4440
     gaataaaatt ataacgcaag aacatagacg agcacacaga aatgcatcag aaaataaagc      4500
     ccaaattcta gaaaaatttt tcttcccaca actacacaaa aaagttaagg aaattacaaa      4560
     agcatgctta acatgcagag agtcaaaata tgatagacac cctccacatc ccgcaattca      4620
     agcaacacca attcccaaat ttccaggtga aatcattcat atagatattt atataacaga      4680
     aaataaaact attttaacta gcattgataa attctcaaaa tacgttcaag tcaagattct      4740
     aaactcaaga gcagcagaag atataaaaat cccgttaaga gaaatactaa ttgcattcgg      4800
     tatgcccaaa actgtagtaa tcgataacga acgagcttta aattcagcct ccataaagtt      4860
     tttgctgcaa gaccagctag gtatcgaagt ttatacaacc cctccatata actcaacaag      4920
     taacggacaa atagagagat tccactccac tctttcagaa ataatgactt gcctaagaaa      4980
     agacaataaa gatatgagtt tcacagatac actctttaaa gcagtacaag aatataacgc      5040
     ctcctaccat tcagttacta aaaaaaaacc aatagagata tttttcggca caacagttca      5100
     ggataaccca gaaaaaacag aagagaatag gaagataata tccaacaagc tactagataa      5160
     acaaaaatat gatttaaatt accacaataa agagagacag gaaattaaaa cttacgaacc      5220
     aggggagata gtctatgtaa aaataaacaa gcgcctaggt tcaaaactca cacccaaata      5280
     caagaaagaa actgtagcag aaaacaggaa ttcaaccatt agaacagctt cagggaaaat      5340
     tatccacaaa aataacattc gaacgtaatt tacaggatat tcgcaccgct atgtctgggt      5400
     ataaccacaa tcctcgacta ctcacactct cagttaattc cgataaagac aggaacttcg      5460
     gcaatgcaga acggaacttt caaaattatt cacgtatttg acatttcaga atatgaaaaa      5520
     atcttcggaa ctttcgaaga aacccttaac aatataagca cctcacacca gatgtaccca      5580
     ctgctaaatt acgaactaaa tagcgtcaga aatgacttgc gcagactcaa accctccata      5640
     agagtggcaa gagcaattaa tgcattggga acagcatgga aatggctggc cggtacaccg      5700
     gaccacagtg accacgaggt tctaattaca aaaattaatg agcaattaga aaataataat      5760
     aaacaagtag ttatcaatag agtattgcaa gatagaatca atgaaataac acaaacctca      5820
     aataacataa tgaaaattgt aaaagatcat tctaatattc aagaggaaaa aatcacgttt      5880
     cttaaataca agctccaaat ctttaaagac gatttaacta atttaattca tgccatagac      5940
     tgggcaaaaa caaatacaat aaactcaata atattgtcag aatccgaagt caaaataata      6000
     gagcagatac tagaaagaga aaaaatcatg ttcttaaatg cagaagaatt gttagaattt      6060
     agccaaataa aaatcgcaag taatggaaaa aatatactct atataatcaa cataccttta      6120
     atctcaaatg aagtttgtac aaccatgtta attaagccaa ttaaaagaaa aaattatatc      6180
     aatgaaataa aattcgaaaa tattgtaaaa tgcgaaaatt caatctatgc tataagagac      6240
     tcatgtgagt cgcataatga aaaaacaatt tgtaataaaa ataagttagt cgacttaaga      6300
     aatgatactt gtactctgcc actattaaaa agccaacctc caaactgccg tgctatcaac      6360
     aatcaacacg tacccaatca cgaacagctg tttgtcggaa caatattgct caacgatttc      6420
     aatggatcaa tcaagatcga cgaagaggaa gtagaactcc atggtacctt cctggtacaa      6480
     ttcgaaaact ccacgatacg catcgaagat gacatatacg aatcaaaagt aatgtccttc      6540
     gcagaagcca ccccaccgct atttcaaatc atggcgaaaa caaacaagat cgacgaagtc      6600
     ctttcactgc aaatgctcaa ggaaataaat ctaaacaaca caagaaaatt agaaacccta      6660
     aagagcagca acgatataag agcaacaatc aatataactc tctctggaac tctactgata      6720
     attatggccg tagttggata tttgctaaaa cgaaagaccc cagccaccac aggccaagcc      6780
     acaacacccg aagcagaaaa gagagaaaat gctcaagttt tctatattgc gaccgaggac      6840
     gtccgcatct aaggggggaa g                                                6861
//
ID   Gypsy-9_DMo-LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   27-FEB-2020 (Rel. 25.09, Created)
DT   17-SEP-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   LTR retrotransposon from Drosophila mojavensis.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DMo-LTR.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-430
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update (17-SEP-2020).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 430 BP; 132 A; 114 C; 85 G; 97 T; 2 other;
     agttaacgac agaccctaca aaagggcatt gcaccggccc aattatatca cggctccagt        60
     gcatgcactt ttgacacgtg cgctttgtca gcagaataca acagcaacgc aaccgcaacc       120
     gtgggagcct atcgtcagca atattaataa gatcaatgca cttggccaaa acacattctg       180
     gtcaacgtgc gcatttccgc cacgagcgcc gagtcagcgc accgatcagc aaccaccgtg       240
     agagccatcg tgtcacaaga cacctattca gcagcaacag cagtgaccac ggcggcagcg       300
     acgccaatag cagcagcggc agctttcata taaataktac ttgtataatt attcttaagt       360
     tagttctaat ccagctccga aagtgaataa atgttttttt aatmcaaaaa ccgctttcga       420
     atatttaatt                                                              430
//
ID   Gypsy-9_DMoj-I repbase;    DNA;    INV; 7903 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DMoj_;
KW   Gypsy-9_DMoj-LTR; Gypsy-9_DMoj-I.
XX
NM   Gypsy-9_DMoj-I.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7903
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1279-1279 (2012).
XX
RN   [3]
RP   1-7903
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: updated with consensus, 98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..1287
FT                 /product="Gypsy-9_DMoj-I_1p"
FT                 /translation="MVRAWVYNLKKDEVLRYGDEFGVSLSGTLDVMRRQFG
FT                 EWVARNEGSIPYSLRIAELERLHGRRASLRDEATTAVTEDDLESELAHVAR
FT                 LCVPSTSAAARLQGTRQGEMRATSTPQPEIRPRGHDSTAQEYPKVAKQVRE
FT                 WSFRFDGTTKPLEFLEQVEWSADTYGLDLDMIPRAMPELLKGMALKWYVAN
FT                 NRHWTAWATFVRSFQEFFLPRGYLEKLEDDVKRRRQMVDECFKVYMVEMQT
FT                 LMRPLRYGADREMKLIYNNSLPDLRAYARPYQFHNLVELMHLADEFEELEK
FT                 DRERLRQQPRHGRSRLMAMDDAGGDVEYRRMEDEAKPSPAPRTGATGARTH
FT                 IPNPARACRVCGQEGHRAFTCRNKALDFCWQCGRIGVRTFACCQSGNEKRH
FT                 PPSRGEREQQSGAPRH"
FT   CDS           1107..4409
FT                 /product="Gypsy-9_DMoj-I_2p"
FT                 /translation="MPSVWPGGAPRVYVSQQGAGFLLAVRAHWSKNVCLLP
FT                 VGKREATPAIQGRAGAAVRSPQALVGRLQDEGSQMSAIVAIGATQQRATID
FT                 TGATSSFISEKLADELRGVGVVRATRRRIRLADGSCSQVDSQLEATISLGN
FT                 RQIQIPLLILPGVIEDLVLGWDFLASMGTTLECGGLTLKVEPRIPQSSGQP
FT                 EEKLSVVVASVEANPATPMEAKMEQPTPMHDDPEVDAFLRHELEKFQHVKG
FT                 TTRITEHRIRMQDNRPIKQRYFPKNPKMQAEINLQVDELLAKGCIEPSKSP
FT                 HSAPIVMVRKKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYI
FT                 SSLDLKDGYWQIPMEKASRPLTAFTVPGKGLFQWKVMPFGLHSAPATFQRA
FT                 LDQVIGPXMMPHAFAYLDDIIVIGRTRQEHMNNLREVFRRLRAANLRINID
FT                 KCDFFKKELKYLGHKVTEDGICTDPEKVAAIAELKPPTNVKELRQYVGVAS
FT                 WYRRFVPDFAATVHPLNALLKKGTKWEWTEERQRAFETVKAKLTESPVLAC
FT                 PDFSKPFCLQTDASNYGLGAILTQTSEDGERVISYASRTLNSAEKNYSATE
FT                 KECLAIIWGIRKLRPYLEGYKFVVVTDHMALKWLNSIESPTGRIARWALEL
FT                 QQYDFEIRYRKGKQNVVADALSRQPLGEEACRLVKSKETPAGTGCRWLTRL
FT                 QQDIKKAPHKFPDYMEESGNLYRHIPHQAGHEDVAAWKLCVPADRRKQVLE
FT                 ENHDAATAGHLGSRKTIARVAARYYWPGMYRDVRRYIQRCEVCQRYKPSQL
FT                 QAAGQMLTQVPEEPWATVCADFVGPLPRSKHGNTMLLVFIDRFSKWTEMVP
FT                 LRSANSTALQKAFRERILARFGTPKVLITDNGTQFTSRAFKVFLEELGVRH
FT                 QLTAPYTPQENPTERANRTVKTMIAQFAGEDQRCWDDALPELTLAVNSSVS
FT                 ASTGYSAAFITQGREPRLPKSLFDAQTIGTGQEAQTPVERASKMREVFEIV
FT                 RRNLERAGQDQARHYNLRRRQWKPAVGDKVWAKERHLSNAAEGFAAKLAPR
FT                 YGGPYIVASFVSPVICRIRSEAEKRTRTAHVADLKPWRGDTGEQ"
FT   CDS           5677..6597
FT                 /product="Gypsy-9_DMoj-I_3p"
FT                 /translation="MARGSPGSWTSGKEDRAWSPVSSPSGAAWEERQEEER
FT                 WDESLVSDYVRNGRYSPTRPLWRPPRPPTPHRALQSSEEEEEEEQPIIIID
FT                 SDEDEVGEQDEIIVISDSEEGETPEPPRVSASYAGKVVGGRLEHRAEVVIT
FT                 WSEPLTTKPAGFILEEVSPPETPPQETPPQATPQQATPPPPIPQETPPQTT
FT                 PQQATAPPPTPPETSMDADEEWRPIRLPARPALQRQVSEPAPPPPQRPTLQ
FT                 RQVSWPDAGAAQWVELRREEWPVEVEQHAARIEAQGSGRTARIVWARGTKY
FT                 RVRRTRIGCRAFKYV"
XX
SQ   Sequence 7903 BP; 2095 A; 2014 C; 2459 G; 1327 T; 8 other;
     actggcgccc aacgtggggc cctgcgataa gagtgtgatt agtgaatact tgtgaatatg        60
     gtgcgagcgt gggtatacaa tcttaaaaaa gatgaagtgc tgcgttatgg tgacgaattc       120
     ggagtgagct tgtcaggcac actagacgtt atgcggaggc agtttggcga gtgggttgcg       180
     aggaatgaag gaagcattcc ttactcactg aggatcgccg agctggagcg actgcatgga       240
     cgccgtgcct cactcaggga tgaggcaacg accgccgtca cggaggacga cctggaatca       300
     gagcttgcgc atgtggcgcg gctctgtgtg ccctccacaa gcgcagcagc acgactgcag       360
     ggcacgcgac agggtgagat gagagccaca tccaccccgc aaccggaaat taggccacga       420
     ggacacgaca gcacagctca ggaatatcca aaggtggcca aacaagtgcg ggagtggagc       480
     ttccgctttg atggcaccac aaagcctttg gagttcttgg agcaggtgga gtggtcggcg       540
     gacacctatg gcctggatct ggacatgatc ccgcgggcga tgccagagct gctgaagggc       600
     atggcattaa aatggtacgt ggccaacaac cggcactgga cggcgtgggc gacattcgtg       660
     cgcagcttcc aggagttttt cctgcccaga ggctatctgg agaagctgga ggatgacgtc       720
     aaacgccgga ggcagatggt agatgagtgc ttcaaagtct acatggtgga aatgcagact       780
     ctcatgcggc ctctgcgcta tggagcagac cgcgaaatga agctgatata caataacagc       840
     ctgcccgatc tgcgcgctta cgccaggccg tatcaattcc acaatctagt ggaattgatg       900
     cacctggcag atgagttcga ggagctggag aaggaccgcg agaggttgcg acaacagcca       960
     cggcatggcc ggtcacgact gatggccatg gacgacgctg gaggcgatgt ggagtatcgc      1020
     cgcatggagg atgaggcgaa gccttctcct gcgccaagga caggcgcaac cggagcaagg      1080
     acacacatcc cgaatccagc cagggcatgc cgagtgtgtg gccaggaggg gcaccgcgcg      1140
     tttacgtgtc gcaacaaggc gctggatttc tgctggcagt gcgggcgcat tggagtaaga      1200
     acgtttgcct gttgccagtc gggaaacgag aagcgacacc cgccatccag gggcgagcgg      1260
     gagcagcagt caggagcccc caggcactag tgggccgtct ccaggatgaa ggcagccaga      1320
     tgtcggcgat cgtggccatt ggagccactc aacaaagagc tacgatcgac acgggagcca      1380
     caagcagctt tatcagcgaa aagcttgctg acgagctcag aggagtgggc gtggtgcgtg      1440
     ctacacggcg gcgcatacgc ttagcggacg gcagttgcag tcaggtggac tcgcaactgg      1500
     aggcgacgat cagcctgggg aatcggcaaa tacagattcc gttgctgatt ctgccaggag      1560
     tgatcgaaga tctagtgctg ggctgggatt tcttggccag catgggcacc acactggagt      1620
     gcggtggctt gacattgaag gtcgagccaa gaattccaca gtcgagcgga cagccggagg      1680
     agaagctatc cgtggttgtg gccagcgtgg aggcgaaccc agcgacgccg atggaggcga      1740
     aaatggaaca gccaacgcct atgcacgatg acccagaggt ggatgctttc ctgaggcatg      1800
     agctggagaa gttccagcat gtgaagggca ccaccaggat cacggagcac cggatcagga      1860
     tgcaggataa caggcccata aagcagcgct acttccccaa aaatccaaaa atgcaggcgg      1920
     agatcaacct gcaggtggat gagctgctgg ccaaaggctg catcgagccc tcgaagagcc      1980
     cacatagcgc gccgattgtc atggttcgta agaagaatgg gaagtggcgg ctatgtgtgg      2040
     attttcgaca gctaaacagc agatccatca aagatgcata ccctttgccg cgtgtgcatc      2100
     acattctgga ccagctgcga gaggcgcgct acatcagcag cctggatttg aaggatgggt      2160
     attggcagat accgatggag aaggccagca gaccactgac ggcattcacg gtgccaggaa      2220
     aggggctctt tcagtggaaa gtgatgccat ttggactcca ttctgcgcca gcaacgtttc      2280
     agcgagctct ggaccaagtg atcggcccag amatgatgcc ccatgccttt gcctacctgg      2340
     acgacatcat cgtcatcggc cggacgcgac aggagcatat gaacaaccta cgagaggtgt      2400
     tccggcgact gcgggcagcc aacttgagga tcaacatcga caagtgcgat ttcttcaaga      2460
     aagagctaaa gtatctgggt cacaaggtca cggaggatgg catttgcacg gatccagaga      2520
     aagtggccgc tatcgccgag ctgaagccac ccacaaacgt aaaagagtta cggcaatacg      2580
     tgggcgtggc ttcatggtac cgccgctttg tgccagattt tgcagccaca gtgcatccgc      2640
     taaatgcact gctcaaaaag ggcacgaagt gggagtggac ggaggagcgg caaagagcgt      2700
     tcgagacggt aaaggccaaa ttgacggagt caccggtgct ggcgtgccct gatttctcga      2760
     agccattttg cttgcaaacg gacgcaagca attatgggct tggggcaatc ctgacgcaga      2820
     cctcggagga tggwgagcgc gtcatttcgt atgccagccg gacactgaac agtgctgaaa      2880
     agaactattc agctactgag aaagagtgtc tggctataat ctggggcata cgaaagctca      2940
     ggccatacct ggaaggctac aaatttgtag tggtcactga ccatatggct ctgaagtggc      3000
     tcaattcaat cgagagcccc acgggaagga ttgccagatg ggcactggag ctgcagcagt      3060
     atgacttcga gatccgctac aggaagggca agcagaatgt ggtagcagat gcgctctcac      3120
     ggcagcctct gggagaggag gcgtgtcgat tggtcaagag caaggagacg ccagctggga      3180
     caggatgtcg ctggctcacc aggcttcagc aagacataaa gaaggcgcca cataagtttc      3240
     cagactatat ggaagagtct ggaaacttat atcggcacat ccctcatcaa gccggccacg      3300
     aggatgtggc tgcatggaag ttgtgcgtgc cggcggaccg gcgcaaacaa gtgctggagg      3360
     agaaccacga cgcagccacc gctggccacc ttgggagccg aaaaactatc gctcgggtgg      3420
     cagcgcggta ttactggcca ggtatgtacc gggatgtgag aagatacata cagcgctgcg      3480
     aggtgtgcca gcgatacaag cccagtcagc tgcaagctgc tgggcaaatg ctgacacagg      3540
     tgcccgagga gccatgggca acagtttgtg ccgattttgt tggcccactg ccgagatcaa      3600
     agcatggtaa cactatgctt ttggtcttca tagaccgctt ctcgaaatgg acggagatgg      3660
     tgccgctgcg gagtgcgaat agcacagctc tccagaaggc atttcgagag cggatcttgg      3720
     cgcggttcgg cacgccaaag gtgctcatta cggataatgg tacccaattc accagtcggg      3780
     cattcaaggt gtttctagag gagcttgggg tgcgccacca gctgacagca ccatacacac      3840
     ctcaagagaa tcccactgag agggccaaca ggacagtkaa aacgatgatt gcgcagttcg      3900
     ctggagagga ccagagatgc tgggacgacg cattgccgga gttgacgttg gcggtcaaca      3960
     gcagcgtgtc agcatccaca ggatattcgg ccgccttcat cacgcaaggg cgagagccta      4020
     ggttgcccaa atcactgttc gacgcgcaaa cgattggcac aggccaggag gcacagaccc      4080
     cagtcgagag agccagcaag atgcgcgaag tgtttgagat cgtgcgtcgg aacctggaga      4140
     gagctggaca ggatcaggcg cggcactaca atctacggag gcggcagtgg aagccggccg      4200
     taggtgacaa ggtgtgggca aaggaacgcc acttgtctaa tgccgcagag ggattcgcag      4260
     caaaactggc gccacgctat ggaggcccat atatagtggc cagttttgtg tctccagtca      4320
     tctgccggat aaggtcggag gcagagaagc ggaccaggac ggcgcatgtg gcggatctca      4380
     agccgtggag aggagacacg ggtgagcaat agagccgttt tgtttttttt ttcaaaaaaa      4440
     aaaaaaaaaa aaaaagggag tgaatacaca gcgaagtgta ttgcttctca tcaagaaaaa      4500
     gaagaagaag aaaaaaaaga cgacaaaatt ttgctcaaaa atgcataatt tcggttgcga      4560
     aacgcatctg tgactggaaa accacagttg ccaccaggaa aattacggta tgtgggtgcg      4620
     caacaacaat ttgtttgaac tgcgcgcgca cgacagcaag cagtgtacag tactgcgccg      4680
     aaaaacttag ctgtcggtgc atgcgcaatg catagataca acaacaaagc agtgcatgcg      4740
     caagcagcac tcatatacgg tacatgcgca acaacaacgc gcgcagctga aattatgtat      4800
     twatckmgcg aaagcgaaaa gcggaaaaac aamaacaagc cgcacgcatt ccaggcgaaa      4860
     gcatttctgc acacacacac acagcgaagc gagagcaagc gagcgtaggc aagggtcaag      4920
     ggcctacgtc ggctgcccag cgatcactag cgcacgaaga tgtcaaagcg agcgacatct      4980
     aaaaccgcca acaacaaaat gtacagcgac atctaaaacc gccaacaaca aaacgtgcag      5040
     agacaactaa aacagccaac aacaaaacac acagcgacat ataaaacaat cactaccgaa      5100
     gagatgcata aaacggccaa caacaatgca acgcagcaga agagcttgca tttggwtgtt      5160
     cggccaccga agggctatgt atgcatgtgt aggtgagagt ggggaaaacg gtatcaaggc      5220
     gataccgtag cctgcctgga attcagccat aaggcaggga aagctagagt gggctgaaca      5280
     gaggacacag gacccgttat atgctgccgc ctacgcagcc ggcggcgcgg cagcataagg      5340
     gtataaaatg ggcaggcgag ctttggctcg gcctatttgg tgaaaaatta ctatggaaag      5400
     tggacgcatc gcgaaagata acctcgatct gggcatcggc cgagtacacc ctgccgatcc      5460
     tcggttgctg gccagcgact acgctggagc ggcacgtgga gcgagcaggg tggacacacc      5520
     ggtgtccaga ccacgagcgc gcaggagtag aacgcggctg ccgccggtga gactgccgtt      5580
     tcacccacac cggcagccga agagacggct acgacgccat cggccgtatt tggagctgga      5640
     gccgtcaacc agcgaaggag gagagcgtgg ccacggatgg ctcgtggttc gccaggtagc      5700
     tggaccagcg gaaaagagga cagggcatgg tcaccggtga gctcgcccag tggcgcagcc      5760
     tgggaggagc ggcaggagga ggagcggtgg gacgagtcgc tggtcagcga ctacgtccgc      5820
     aacggccgat attcgccaac gcgtccgtta tggcgcccac cgcgtccgcc cacgcctcac      5880
     cgagcgctgc agagcagcga agaggaagaa gaagaagagc agcccatcat tattatcgac      5940
     agcgacgagg acgaggtggg cgagcaggat gagataattg tgatctccga ttcggaggag      6000
     ggagaaacac cagaacctcc gcgggtaagt gccagctacg ctggaaaggt ggtggggggt      6060
     cgcttggagc atcgcgccga ggttgtcata acttggagcg aacccctcac cacgaagccc      6120
     gcggggttca tattggaaga agtttcgcct ccagagacgc caccacagga gacgccacca      6180
     caggcgacgc cgcaacaggc gacaccgccg ccgcccatac cgcaggagac gccaccacag      6240
     acgacgccgc aacaggcgac cgcgccgccg cccacgccac cggagacgtc gatggacgcc      6300
     gacgaggagt ggcggccgat ccgactgccc gcccggccag cgttacaacg ccaggtgtcg      6360
     gagccggcgc cgccaccacc ccagaggcct acgctacagc ggcaggtatc ttggcccgac      6420
     gcgggagcag cacaatgggt ggagttgcgg cgtgaggagt ggccagtgga agtggagcaa      6480
     cacgctgccc ggatagaggc ccagggcagc gggcgcaccg cccgcatcgt ctgggcaagg      6540
     ggcacgaagt acagggtgcg gcggacacgt atcggatgcc gggcattcaa atatgtctaa      6600
     aaaaaagaag agaagtgtac actatatctc agaataaaaa aaaaaaaaat aaaaataaaa      6660
     atatatctat acatacataa aacacatagt tacagctttg ggttgcccat tgagagattg      6720
     gttcaccatc gatgcctgcc acgcgacgaa tccatccggt tgtccgtgct gagacgtagg      6780
     cgcgttttgt tggccgatcc tcgcgcactg gccagcgact ttgctggagc tgtgcgcgaa      6840
     tgaggagtga gccgcaaaat agcagccggc gtcaaagctc gacaccggtg gcagttgcga      6900
     acgacatcga tgtggccagc tcccaacagc aatccaatta tgtgtctgca gcagcgccgc      6960
     acggagccag ccgcaaacgg agatcagcga cgagccttcg ccagcagcag agaggtcgac      7020
     gagggatatg gtgaggcagg tggccgccgc acgagtgcca aagccaccgg agactgcaga      7080
     accaacaggt gagttgtgca ggagcgtccg gcgtgggcgg aggcagcggc ggcccatatt      7140
     gcacgcgggc atgcagtcag agatgtggct gtttgctgtg agagtgtgac tacagacgcc      7200
     tgccacgcga atggctccac cggtcatgga tcgccaggtg tcggtaaagc ttggcaaccg      7260
     aatcctcgcg cactggccag cgactccgct ggagctgtgc gcgaaagagg agtggccaac      7320
     aagcgcaccg acaccaaaga tcgaacaccg gtgcccattt gcgaacgacg tctgtggccc      7380
     gatctcatag cagcagtgca tgtattgact gcgatgcccc accggagcac ccccaagggg      7440
     ccaagaagca gcagaaacca gaagagagat gtctccaacg gcgagggaca gcatgcgcca      7500
     aatgggcgaa atggccattg ccgtgcgcgc gtgcgccaat gccaccgggg gctgtaaaac      7560
     cgagaggcga gttttgcagc agcgcccggc gtgggcattg gcagcggcag gccatcaggt      7620
     caagaggcat agaggaaaag atgcccaacc tgaaaaacaa tatttttatt aaagttttgt      7680
     cgagacttat aaaaatatta gccccattca cttaccggca gagtgcagca ttgccagcgg      7740
     taaggggaaa atacagctgt taacattaac agagtgttaa cagcagcgat cagcgcaaaa      7800
     tggagcatcg agggatggag cgacgcaaaa cggagcagcg cagcggaggc gggcgccaaa      7860
     ttcaaacacg atggtctcgt gttttcccga aggaagaggg gag                        7903
//
ID   Gypsy-9_DMoj-LTR repbase;    DNA;    INV; 1191 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.07, Created)
DT   13-OCT-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DMoj_;
KW   Gypsy-9_DMoj-LTR; Gypsy-9_DMoj-I.
XX
NM   Gypsy-9_DMoj-LTR.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1191
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(7), 1280-1280 (2012).
XX
RN   [3]
RP   1-1191
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: sequence updated.
XX
SQ   Sequence 1191 BP; 343 A; 277 C; 324 G; 247 T; 0 other;
     tgtgaggagc aatataggta tgcacgtatt aatgtatata aacgtatgta tttgctgtgc        60
     gtttatatgc atatacgtgc atatacatgt tgctccacac agcgacgcga atactgtagg       120
     agcgaccctc gcactggaaa gggggtcaaa gtcctgttag aggcgggctc tttcgctcct       180
     acagattcag caatgggttc gcgtcgcacg cacgacgatc atcggtgacc gttagccgag       240
     gtgccgttcg ggccgggtga tagcagtgga cgttttcact cgcatggcaa caacggtact       300
     tcggccaatg ggaggctgcc acgcaatttg gcgggaaagt ggcgtcaccc agatcacgcc       360
     actttaccgt ttttatgggc acgagcagca ggaaggcccc gctccagagc cgaacaggcc       420
     ccgttaccac acgaagcagg gcctgtggct ggggtataaa aggccaccag cagctccata       480
     cgaggaggtc aagaagtcaa aaagtcaaaa agtcaaaaag gagtcgaaac gatacgagag       540
     agtgttgccg tcgaaattta taaaagtgaa agtgaagaag tgtcgaaatc aagtcaacgc       600
     gagtggtaaa acaggactcc caggacatcg tgagaacagc aaggacatcg tgggaacagc       660
     aaggacatcc agtgggaatc cttgcagatc atcagcaggc gccgatcagg acatcggtgc       720
     acatcagcaa cgtaagcgag gcctgcacac ctgggtgagt tcgcgtagcc gtgcgtaaga       780
     gaagtgcttg tgagtgaacg aagctagcgt tgtgctgtga gtgagcgaga tagtaggaga       840
     gatcggcata gctggcgaac cgccagagtt tacagatcca gatcctggcg tttctcaaat       900
     cctcacagtg agctagcgtg tttagcacaa cactctccca gccggagtgc gttgaaccag       960
     cgctcagtag gtgtgcgtcg ctaagcaaac cagcgagcca gcatccattt aaataagtga      1020
     cttgtacatt gcatatttat ttaagaaaat ataccactgc gctataaaac ctaaaccaca      1080
     agactaatta attatcgcag gggcttcaac aaataaattt gttggcaacg aatccacagt      1140
     cagctgaaac tagcccagct tagactcggg ataaaccgaa ggttcgttac a               1191
//
ID   Gypsy-9_DPer-I repbase;    DNA;    INV; 4896 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DPer-I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4896
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1519-1519 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..841
FT                 /product="Gypsy-9_DPer-I_1p"
FT                 /translation="MDKPSNETGVTKLLRGIRIGETGRTRDPKETTTTIFG
FT                 ENRPPNTYSREARTTSKYPNTREKPENQEPKATITKRSTTKTNNGREPRGD
FT                 QDRQEEIAISKTDKERITRSSSDNRKNTQVGPDLYRKRRAARIPEQDGGIS
FT                 RNLRGRTGPPRIRNAGNPGRKRARLVAHKASASHIMGGSKGRTKRELHIPQ
FT                 IPRGACKTSGRAKQAETEPVRDYIQEIRKLMRFGTYTEQEKLEIIYQNCRL
FT                 PLETIREEERIPNAVGIH"
FT   CDS           909..4895
FT                 /product="Gypsy-9_DPer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, zinc-finger and integrase."
FT                 /translation="MELPTKRPTSXAKDAIPTKEMSKMWKLWARGPNMQQG
FT                 TRTVLLDLQQTRSTHNRLLQKTTGKHTGRRTNPRISCGPKPAERDNTQLIF
FT                 NKNQLLGRARIGSQLMEVIIDTGATRCMINERAAEKLKGEGIEGVENRLIR
FT                 LADGSTRRTTRRIQLTVELGGKETTQSFLIMTGVPDTPILGMEFLKDAGTS
FT                 ITCGEATVNFNGEPNPKRKEESARNSVTEPTDEEIEKWIKTEVQKSNTLEG
FT                 VSNVTKHRIFLKDDRPVKQRYYPRNPAQMEIINKEISELIKQDLIEPSHSP
FT                 YSSPIVLIKKKTGDWRVCVDYRLLNEKTEKDAYPLPRMDFILNQLKEAKYI
FT                 STLDLKSGYWQIPMEKQSRHYTAFTAPGRGLYQWKVMPFGLTTAPATFQRA
FT                 LDSVIGPDMEPFAFAYLDDIIVIGRTKVEHMQKLKTVFERLRTANLRINAA
FT                 KCHFFQKKLKYLGHMVSEEGIHTDPDKVAAIKELTAPTTLKQLHSFLGLAS
FT                 WYRRFVPAYTERAKALQDLLKKGQKFEWGEAQENSFQDLKLCLTEAPILAC
FT                 PDFRKTFILQTDASDCGLGAVLTQEDADGEHVISYASRKLKSEETKYSATE
FT                 KECLAIYWGIHKMRMYLEGYQFIVITDHLALKWLNSIESPSGRVARWALGL
FT                 QPFSFEIRYRKGKLNAVADGLSRLPREETRIAEIVECAWYQNKWNQVEMTP
FT                 KEATDYTIKHGRLYRHIPSQDDEDDQPWKLCVPKQERQRVLTENHTNPTAG
FT                 HLGIRRTKIRIRQRYFWPGLSRDVTRFVRTCESCQKFKVSQQAAAGKMLTK
FT                 IANAPWETICVDFVGPLPRSPHGNTALIVFIDKFSKWVEVTPARSATADAF
FT                 LKAFREKILARGGAPKRVISDNGVQFTSRKTKQVMKTWGITQQFTAPYTPQ
FT                 ENPTERANRTLKTMIAQFAGGKHNKWDEQLPELTLAINSSKSEATGFSPAY
FT                 LIFGRELRLPGNLFDEVTLGSGFNNQTNQESTDKRKQTETMARQNMEEAAA
FT                 KQARHYNLRKRAWKPKKGDLVWVRTHPLSKKIDKTTAKLEPKYTGPCKVLE
FT                 LTSPVIITVQDTTTNKRLRAHVSQLKPAKIEEANTITMPSLYLFRQMENKE
FT                 EKFNMSARKFKERMARASHKNRAAKLLPDAPPPSSRMKVSGTKVSAPRKAE
FT                 TNKTMETTAGQRETQGEQAATHKEVIPTKKRISWANQANLQEQTARKTSEQ
FT                 QGPELSWAKQVEDEESDRDVLDLNPERPTPEPETRRPIHRGTIPGEWNVPE
FT                 KFELATTAIELVKAKLHDRPKHTQRRFKLWNEKQEACWVKIGRAGDVRISA
FT                 WFQTKSGGNAPLGKEGG"
XX
SQ   Sequence 4896 BP; 1832 A; 1168 C; 1174 G; 718 T; 4 other;
     gtggcgcccg agcaggttgt ggtagcataa gaagcataat ctcaaaggtc aagatggcaa        60
     aacaatggat aaaccaagca acgaaactgg agttacaaaa ctattgcgag gaattcggat       120
     tggagaaact ggacggacta gagacccaaa agaaacaact actacaattt tcggagagaa       180
     cagacctccc aatacatatt cgagagaggc tagaacaact agcaaatacc caaacacgag       240
     ggaaaagccc gagaaccaag agcccaaggc aacaatcacc aaaaggagta ccacaaaaac       300
     caacaatgga agagagccaa ggggagacca ggacaggcag gaagaaatcg ctatttccaa       360
     aacagataaa gaaaggatca ccagaagcag tagcgataat agaaaaaata cgcaagtggg       420
     acctgatctt tacaggaaaa ggagggctgc tagaattcct gagcaggatg gaggaattag       480
     cagaaaccta cggggtagaa ccggaccacc tcgtattcgc aatgccggta atcctggaag       540
     aaagcgcgct agactggtgg cacacaaagc cagcgccagt cacatcatgg gaggaagcaa       600
     aggtcggact aaaagagaac ttcatatccc ccagatacca agaggagctt gcaaaacaag       660
     tggcagagcg aaacaagcgg aaacagaacc agttcgagac tatatccaag aaataaggaa       720
     gttaatgagg ttcggaacct acacagagca ggaaaaactg gaaataatat accagaactg       780
     ccggctgccg cttgaaacta tacgtgaaga ggagagaatt ccaaacgctg tcggaattca       840
     ttgatcatcg cagaggaatt cgaaaaaata gagacagatg caggactctc caaggttaca       900
     ggtcgccaat ggaattaccc acaaaacgac caaccagcwt ggcaaaggac gcaataccga       960
     caaaggaaat gtcaaagatg tggaaactat gggcacgagg cccgaacatg cagcagggaa      1020
     cccgtactgt actgctggac ctgcaacaaa caaggagtac gcacaataga ctgctgcaga      1080
     aaacaaccgg aaaacacaca gggcgcagga ccaacccgcg aatctcctgt ggcccaaaac      1140
     cagctgagcg ggacaacaca caactaatat ttaacaagaa ccaactttta ggacgggcca      1200
     ggattggatc acaactgatg gaagtaatca tcgatacagg ggcaacaaga tgcatgataa      1260
     acgaaagggc ggccgaaaaa ctaaaaggag aaggtatcga aggagtggaa aacagattaa      1320
     tccgtctcgc ggatggaagc actcggagaa caacacgaag aatccaacta acagtagaac      1380
     tagggggaaa agaaaccacc caatcattcc taatcatgac aggggtacca gacaccccca      1440
     tactaggaat ggaattctta aaggatgcag gcacatcaat aacgtgcgga gaagccacag      1500
     taaacttcaa cggggaacca aacccaaaga gaaaggagga aagcgcaaga aactcagtaa      1560
     cagagccgac ggacgaagaa atcgaaaaat ggattaaaac ggaggtacag aaatccaaca      1620
     ctcttgaagg ggtgagcaat gttacgaaac atcggatatt tctgaaagat gacagaccag      1680
     tcaaacagag gtattaccca agaaacccag cgcaaatgga aatcatcaac aaagagatca      1740
     gcgaactcat aaagcaagat ctaatagaac catcacacag cccatacagc tcgccgattg      1800
     tcctcataaa aaagaaaact ggagattgga gggtctgcgt ggactaccga ctgttaaacg      1860
     aaaaaacaga gaaggatgca tacccattac cacggatgga ctttattcta aatcagctta      1920
     aagaggctaa atacattagc acgctcgact taaagtcagg gtattggcaa atcccaatgg      1980
     aaaaacagag ccgacactac acagccttta cagctcccgg gcgaggattg taccaatgga      2040
     aggtcatgcc attcggactc acaacagcac ctgctacgtt ccaaagagcc ctagactcgg      2100
     taatcggacc ggacatggaa ccattcgctt tcgcatacct agacgacata atcgtaattg      2160
     ggcggacgaa agttgaacac atgcagaaac taaaaacggt attcgaacgg ctacggacag      2220
     caaacctacg cattaacgca gcaaaatgtc acttttttca aaagaaactg aaatacctag      2280
     gacacatggt gagcgaggaa ggaattcaca cagacccaga taaagtggcg gccattaaag      2340
     aactcaccgc accaactaca ctgaaacagc tgcatagttt tttgggcctg gcgtcttggt      2400
     accgcagatt cgtaccagcg tacaccgaac gggcaaaagc tctacaagac ctactaaaaa      2460
     aggggcaaaa atttgagtgg ggcgaagcac aggagaacag cttccaagac ctaaagctgt      2520
     gtctaacgga agcaccaata ttagcatgcc cggacttcag gaaaacattc atactgcaaa      2580
     cagacgcaag cgactgcggc ctaggagcgg tgttgaccca ggaagatgcg gacggagaac      2640
     atgtaatttc ctacgcaagc cgcaagctca aaagcgagga aacsaaatac tccgcaacgg      2700
     aaaaagaatg cctagccatc tactggggta tacacaagat gaggatgtac ctagaaggct      2760
     accaatttat cgtaattacg gatcacctag ccctcaaatg gttaaattcc atcgaaagcc      2820
     catccggacg agtagcaaga tgggcattgg gactgcaacc attctcattc gaaatacgat      2880
     atcggaaagg caagctgaac gcagtggcgg acggactctc ccgcttacca cgcgaagaaa      2940
     cccgaatagc agaaatcgta gaatgcgctt ggtatcaaaa caaatggaac caagtagaga      3000
     tgacaccaaa agaagctacg gattatacca taaaacacgg aagattatac cgacacatac      3060
     caagccaaga cgacgaagac gaccaaccct ggaaactgtg cgttccaaaa caagagagac      3120
     agagggtact aaccgaaaat cacacaaacc caacagccgg acatctcggg atcagacgca      3180
     cgaaaatcag aataaggcag cgatactttt ggccagggct aagcagagac gtaacacgat      3240
     tcgtacgaac atgcgaaagc tgccaaaaat ttaaggtatc gcaacaagca gcggcwggca      3300
     aaatgctgac caaaatcgca aacgcaccat gggaaacaat atgcgtcgat ttcgtgggac      3360
     cactcccaag atcgccgcac ggcaacaccg cactaatcgt gtttatcgat aaattttcga      3420
     aatgggtgga ggtcacaccg gcaagaagcg caacggctga cgcattccta aaggcgttca      3480
     gagaaaaaat actggcgagg ggaggtgcac caaagcgagt gatctcagac aacggcgtac      3540
     aatttacaag cagaaagacg aaacaggtaa tgaaaacgtg gggcatcacc caacaattca      3600
     cggcaccata cacaccacaa gaaaacccaa ccgaacgagc gaaccgaaca ctaaagacga      3660
     tgatcgcaca attcgcggga gggaaacaca acaaatggga cgaacaacta cccgaactaa      3720
     ccctagcgat aaatagcagc aagtcagaag caacagggtt tagtccagca tacctgatat      3780
     tcgggagaga acttagattg ccgggcaacc tatttgacga ggtaacacta gggtcagggt      3840
     tcaacaatca aacaaaccaa gaaagcaccg acaaacggaa acaaacagaa acaatggcca      3900
     ggcaaaacat ggaagaagca gcagcaaaac aagcaagaca ttacaatttg cgaaagcgag      3960
     catggaaacc aaaaaaaggg gacttagtat gggtacgaac gcacccacta tcgaaaaaga      4020
     tcgacaagac aacagcgaaa ctagaaccga aatacaccgg cccgtgtaag gtactcgaac      4080
     taacctcccc agtgatcata acmgtacaag atacgacaac gaacaaaaga ctaagggcac      4140
     acgtctcaca actaaaacct gcaaaaatag aggaagcaaa cacaataacg atgccctctc      4200
     tctacctttt cagacagatg gaaaataaag aagagaaatt caacatgtcg gcccgaaaat      4260
     tcaaagagag gatggcacgg gccagccaca agaaccgagc ggcaaaacta ctaccggacg      4320
     cccccccgcc cagctcacgg atgaaagtat cggggacaaa ggtgtcagcg cccaggaaag      4380
     cagaaacgaa caaaacaatg gaaaccacgg caggacaacg cgagacccaa ggagaacaag      4440
     cagcgacgca caaggaagta atcccaacaa aaaagaggat cagctgggca aaccaagcca      4500
     acctacagga acaaacggca cgaaaaacca gcgaacaaca aggcccggaa ctttcctggg      4560
     ccaaacaagt ggaagacgaa gagtccgacc gggacgtgct ggacctaaac cccgagcggc      4620
     caacaccaga accggaaacc cggaggccca tccatagagg caccatcccg ggcgaatgga      4680
     atgtcccgga aaaattcgaa ctagcgacaa cggcgatcga actagtcaaa gcaaaactcc      4740
     acgaccgccc aaaacacact caacgacgat tcaaactgtg gaacgagaaa caggaggcgt      4800
     gttgggtgaa gatcggccga gctggagatg tccgcataag cgcatggttc caaacaaagt      4860
     caggcggcaa cgctccactg ggaaaggagg ggggag                                4896
//
ID   Gypsy-9_DPer-LTR repbase;    DNA;    INV; 1126 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DPer-LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1126
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1520-1520 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1126 BP; 326 A; 376 C; 209 G; 206 T; 9 other;
     tgtgacgccc agcgccagga agaccaagcg ccggcgccac aaacaccaca acaatwacac        60
     tagaaacacc aagacaagcc atgaagacta aamwataagt attagtagga taagtagaac       120
     ataagcgaca aatacatgaa gacctgccac ataagaaata aaaagaaata aacaaacaat       180
     agaacaaaca atggmammac caatgggmmc gtagmacagc cacccacggt cacaaccaca       240
     gctgaccgcc ccaagtgtga ccataaccca agcaccaacg ggcacactat cagccgatcc       300
     gcacaaacgc gttagggaca catcagcaca acgcgctagg gacatccgta cggatcagct       360
     gcttttcgga aataaaaagg ggctccgcca gagcgatcag catcagttcg gctccggcca       420
     gtggagaggt aagcatcagc attctcctcg gagcgcatta ccctccgcag cattttctcc       480
     tcggagcgca ttaccctccg caacattttt ctcctcggag cgcatttacc ctccgcaaca       540
     tttattctcc tcggagcgca ttcaccctcc gcaacattat ttctcctcgg agcgcattta       600
     ccctccgcaa cattatttct cctcggagcg cattaccctc cgcaacatta attctcctcg       660
     gagcgcattc accctccgca acattatttc tcctcggagc gcattaaccc tccgcaacat       720
     tattctcctc ggagcgcatt accctccgca acattatttc tcctcggagc gcatttaccc       780
     tccgcaacat tcttctcctc ggagcgcatt agacctccgc gccctcaacc gacaccgacc       840
     agacgactac caggacccgc acgcaaccat ccgccacgtg cggcccaccc gaaggacgac       900
     cccggagccg accccgaagg aagagccaga agaaaaaaac ccgcgcacct accaaacttt       960
     gtacctttta agaacaataa aaataactct atctctttta ttaccgctcc aagccccgcc      1020
     ttattcttga accacgagac tctctttcag ctaccacacc cagagatcaa acaaatttct      1080
     gtggaacccg gcgcgacgag cataccccgg ccgaagcgcc gtcaca                     1126
//
ID   Gypsy-9_DRh-I repbase;    DNA;    INV; 6359 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DRh_;
KW   Gypsy-9_DRh-LTR; Gypsy-9_DRh-I.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6359
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1567-1567 (2012).
XX
DR   [1] (Consensus)
XX
CC   Positions [1946-2374] - Reverse transcriptase
CC   Positions [3536-4012] - Integrase core
CC   LTRs are 96% similar to each other.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1589..4429
FT                 /product="Gypsy-9_DRh-I_2p"
FT                 /translation="MNLLILPGVVDELVLGWNFLTGVGAEIKCAGHELRIP
FT                 ARKRHNGCLEERLSVAVDSHLSDEEDIEKFLDKQLADFSTMSGTSTVAEHQ
FT                 ITMKDDKPIKQRYYPKNPRVQGEINAKVDELLQMGFIEHSRSPYSSPIVMV
FT                 KKKTGKWRLCVDFRQINAKSIKDAYPMPRINYILDQLREAKYISSLDLKDG
FT                 YWQVPLEVNSRQYTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPE
FT                 MSPYAFAYQDDIIVIGRTLKEHVENLKEVFRRLKEANLRINADKCKFFKQE
FT                 LLYLGHRVTSEGIGTDPEKVAAIAELEPPSTVRELRQYLGVASWYRRFVPD
FT                 FARIVKPLNDLLRKGTKWIWTPEHQQAFEEVKARLVADPVLACPDFEKKFI
FT                 LQTDASDYGLGAILTQETEDGERVISYSSRTLNGAEKNYSTTEKECLAIVW
FT                 AIRKLKPYLEGYHFKVVTDHMALKWLNSIESPSGRIARWALELQQYDFEIA
FT                 YRKGQLNVVADALSRQPLPETLRAMKDASEKPTNSCSWIRSMCEKIKAQPQ
FT                 KYPDYVMEGESLYRHIPHRAGNEDVVAWKLCVPQGLRQAVLEENHDSPSAG
FT                 HVGSRRTIARLAARYYWPGMHRDARTHVRKCEVCLKYKPNQLQAAGKMLTQ
FT                 VPEEPWATVCADFVGPLPRSKHGNQMILVLIDRFSKWTEIVPLRTATAETL
FT                 QRAFRERIISRFGAPKIVITDNGVQFTSRSFKRFLSEMGIKQQFTAPYTPQ
FT                 ENPTERANRTVKTMIAQFAGKDQRTWDENWPEIMLAVNSSISESTGYSPAF
FT                 LTQGREPRLPNALYDRETLGSGRSTETPDEKAAKLKEIFEIVRRNMEKASQ
FT                 DQARHYNLRRRQWTPEVGSIVWAKEHHLSKAAEGFAAKLAPRYDGPYQVVD
FT                 FVSPVICKIRHTHSKKERTVHIGELKQQQTETAKEQTADTSED"
XX
SQ   Sequence 6359 BP; 2115 A; 1391 C; 1772 G; 1079 T; 2 other;
     gaccataaaa atcagttcgt tacatctggc gcccaaaacg tgattgtccg gtcggtgaga        60
     atcagcaaat aaacagaaaa tggggaaagg atggatatat ctcctcaaga aagaggattt       120
     cgcaaaaata ggagccaagt taggcatcac tttggaggga agaacggatg acatgaggaa       180
     agccctctca gagtacctaa caaggaaaca ggatgaccca ggagtagcag agatctgggc       240
     tgagctggaa gagaaatacg acgataagcc aggcccaaca gtcaaattgc tgaaccctga       300
     cgccgaggag ctcatagcaa gtcttggagt ggacagcatg aaggaagctg gcaggagtcg       360
     aaacgcaagc caagaaagaa aatcagggca gcaaagacct agcacaccag attacgccaa       420
     agtcgcaaag caagtgagag aatggtcgtt caaattcgat ggcacagaga agccactgga       480
     attcctagaa caggtggagt ggtccgcgaa cacgtacggt ctgaacctga acatgatccc       540
     acgtgcaatg ccagagctat tgcaaggcaa agcctgaaat ggtttatttc aaacaataaa       600
     cattggagaa catggggaga tttcagcgaa agtttccaga cgtactttct gccgagaggg       660
     ttcttctcga agttggcaga caaggtgaaa cagcggaaac agggtttcag ggaaccgttc       720
     aaagattaca tggtggacat gcagactttg atgaggccac tcgggtactc gccaaaggag       780
     accctagaaa taatcaagga caactgcaca ccagacctga gaatttcact aagaacgtac       840
     aaagtggatg atctggacac attaatgatc ctggctgacg agtacgaaga actggacaaa       900
     gagcgagaag agttcgttca cgaacacaag ttctctcgaa acaaaatcgc agcaccacca       960
     caaactacat gcaggagatg tgaagacagc acggtaaacc aaacaccgtc ctatggccag      1020
     tggacaccgg ccaatgtaac acaacaaagg cagccaacga acacattatg gaggccacca      1080
     aacaccactc aggtggcacg caacccaatg ccaagagcca ccaatgcaca gacccacata      1140
     atgaacccac aggaggcatg tcgccgttgt ggaggacacg aacactgggc acgaggatgc      1200
     agaaaccaaa gattactgtt ctgctgggtg tgcggcaaag ttggcgtcag gagcgtagag      1260
     tgctgccaaa aggcgggaaa tgggcagcga tcccagtcgc agagaggcgc acaggggtcg      1320
     caaagtgcct cctctccaaa ctaactggca atttgatcga ggaagagcag cagttatccg      1380
     cgtacgttga aattggaggc gtcgcataca aggccacaat tgacacggga gcacgtcaag      1440
     tttcatcaac gaggagctag cggatagact ggctgacaaa ggaaggatca caaggacaag      1500
     acggcaagtt aggttggcag acggcagatg cagcagaata agctcacagc tcgagatcac      1560
     ggtggaattt ggaaacaaac aattggagat gaatctgcta atacttccag gagtagtgga      1620
     tgaactagtg ctgggatgga atttcctcac gggagtcggg gcggaaataa aatgtgccgg      1680
     gcatgaattg cgaataccgg caagaaaacg gcacaatgga tgtctggaag aaaggctgtc      1740
     ggtggctgta gattcacact taagtgatga agaggacatt gagaaattcc tcgacaaaca      1800
     gttagcagat ttcagcacca tgtcaggaac atctacagtg gccgagcacc aaatcaccat      1860
     gaaagacgac aagccaatca aacagaggta ttatcctaag aacccaagag tccaaggaga      1920
     gatcaacgca aaagtggacg agctgttaca aatgggcttc atagaacatt caagaagtcc      1980
     atacagctcg cccatcgtaa tggtgaaaaa gaagacgggc aagtggaggc tatgcgttga      2040
     tttcagacaa ataaacgcga agtccataaa agatgcctac ccgatgccgc ggatcaatta      2100
     tatcctggac caactcagag aggcaaaata cataagcagt ctagacttga aagacggata      2160
     ttggcaagtc cctttggagg taaatagtmg gcaatatacg gcgtttacag tacccggcaa      2220
     aggcttgttc caatggaaag taatgccttt cggactacat tcagcatcgg ccacgttcca      2280
     aagggctctg gatcaggtaa tcggcccgga gatgtcacca tacgcgtttg cataccaaga      2340
     tgacatcatt gtgatcggac gcacgctgaa agaacacgtg gagaacctaa aggaagtgtt      2400
     taggcgcctc aaggaagcaa acttaagaat aaacgccgat aaatgcaaat tcttcaagca      2460
     agagttgctt tacctaggac accgcgttac tagcgaaggg ataggcacag atcccgagaa      2520
     ggtagcggcc atagccgaac tagagccacc gtcgacagta cgcgaactac ggcaatacct      2580
     aggcgtagct tcatggtatc gacgatttgt gccagatttt gcgcgtatag taaaaccact      2640
     gaatgatctt ctacgcaaag gcacaaagtg gatatggacg ccggaacacc aacaggcctt      2700
     cgaagaggta aaggcacgac tagtagccga tccagtgctg gcgtgcccag atttcgagaa      2760
     aaagttcatc cttcagacgg acgccagcga ctatggatta ggtgcaatcc tgactcaaga      2820
     gacagaggac ggcgaaaggg tcatttcata ctcaagccgg acactaaacg gcgcggagaa      2880
     aaattactcc acaacagaaa aagagtgctt ggcaatcgtg tgggcaatca ggaagctgaa      2940
     gccgtacttg gagggctacc attttaaagt ggttacagac cacatggctt taaagtggtt      3000
     aaacagcata gaaagccctt ctggaaggat agcaagatgg gccctggagt tacagcagta      3060
     cgacttcgag atagcgtaca ggaaaggaca gctgaacgtg gtggcagacg ccctatcccg      3120
     acaaccgttg ccggagactc ttagggccat gaaagacgca tcggaaaaac cgaccaatag      3180
     ctgcagctgg atcaggagta tgtgcgagaa aataaaagcc caaccacaaa aatatccaga      3240
     ttatgtaatg gaaggcgagt ctctctatag gcacattcct cacagagcgg gcaatgaaga      3300
     tgtcgtggct tggaaactgt gcgttccgca gggtctaaga caagccgtac tagaagaaaa      3360
     ccatgactcc ccatccgctg gtcatgttgg gagtagaaga acaatagcac gcctggcagc      3420
     ccggtactac tggccaggaa tgcacagaga cgccaggacc cacgtacgca agtgtgaagt      3480
     ttgcctgaaa tacaagccca atcagctgca ggctgcaggg aaaatgctca ctcaggtacc      3540
     agaggaacca tgggcaacag tatgtgcgga tttcgtcggg ccattgccga gatcaaagca      3600
     cggaaaccag atgatactgg tgttaatcga tcggttttcc aaatggacgg aaattgtgcc      3660
     gctacgaaca gcaacagcgg agaccctaca gagggcgttc agagaacgca taatatcaag      3720
     gttcggggct ccaaagatag tgataaccga caacggagta cagttcacca gtcgatcctt      3780
     caaaagattt cttagcgaaa tgggaataaa gcagcaattc acggcgccct acacaccgca      3840
     ggaaaaccca acagaacggg ctaaccgtac ggtaaagacg atgatagctc aattcgcagg      3900
     aaaggatcaa agaacttggg acgagaactg gccagaaatt atgctagcag tgaactcaag      3960
     catatctgaa tcaactggat actccccagc gtttctcaca caaggccggg aaccccgttt      4020
     gccaaacgca ttatacgaca gggaaacgtt aggctcgggg agaagcacag agactccaga      4080
     cgagaaggcc gctaagttaa aagagatctt cgaaatcgta cgccgaaata tggaaaaggc      4140
     atcccaggac caagccagac actacaatct gaggaggagg cagtggacac cagaggtggg      4200
     cagcatagtg tgggccaaag aacaccacct atccaaagca gccgaggggt ttgctgcgaa      4260
     actagccccg aggtacgatg gtccttacca ggttgtagat ttcgtctcgc cggtaatctg      4320
     caaaatacgc cacacacatt cgaagaaaga gcggacggtt cacattggcg agcttaagca      4380
     gcaacaaaca gaaacggcaa aagagcagac ggcggacaca tcggaggact aggacaagga      4440
     tttcacattg atacagactg cgaggcaaca ggattaggcg tcaggccgaa gcaagagtca      4500
     tccatacgcc acgcagaaag gacaatcacg aggataagac acaggatatg aatggaaaag      4560
     gatgctaggg accccgacta cgaggcagac ggattcagcg tcgggcatac gcccgagtca      4620
     tccatcgata cgccgcgtag ataaggtgta aaaaaaaaag ggggacccat acaacgaggc      4680
     agtcggattc agcgtcgggc atacgcccga gtcatccgcc tatacgccgc gtaaataggg      4740
     tacccgagga aaagaaaggt tgcataaaaa ccccaacgag gcagtcggat tcagcgtcgg      4800
     gcatacgccc ggcccgcccg ccgcataata aataataata aaacaataat aaataagaaa      4860
     atatataaac atagaaaacc ctggcacagg gaacacagaa aacacgggca cagcaaacat      4920
     aacaaacgcg cacaatacaa gcaaataaat aacacaaaat aaaacaagcg gcatcggtct      4980
     tcccgtatac gacatcgagg ccctacggcc aagggcgact ggagggcgaa aggctaaaag      5040
     agagagtaaa aagtgagaag ggtgaaagtg gagaaagaaa gaaaaaaact taccattgaa      5100
     actttcttgt catgtcgctc atctaaaggg atgggggcgc ttcgattaat aagcggtcga      5160
     ttggcactgg acgatagtgt cgatcgatgg gcacagaaca ctggagatgt cggcacagga      5220
     agggtcacac taaaaaaata tcgccaccac cggatggcaa cgctgcacta attcgaatca      5280
     tcgagatcgg ctggaaaacc gatcgggaaa gcggtagtgt gaccagacaa cgaaggaaag      5340
     gagatgctta gaacgcgaag catatggggg aaacatcttg ggcgggacat tcaaaggaga      5400
     tacgaaggag aacacgagac gtctatgggg gaaacatctt gggcgggaaa aggaatggag      5460
     catcggcgct gtggaactca ggtacgagct gtgagcgtcg agggaaccat ttggaggagc      5520
     aagaagactc gaaggctaca aggatttaca aggaagacag ccggagagaa gaaagtcaag      5580
     tctatggggg aaacatctcg ggcgggaaga ggaatggaac atcggcgctg tggaactcag      5640
     gtacgagctg tgagcgtcga gggaaccatt tgaaggagca agaggactcg aaggctacaa      5700
     ggatttacaa ggaagacagc cggagagaag aaaatcaagt ctgggggaaa catcttgggg      5760
     cgggcggggg cgcgcgggga aggaggacca acatcagcga tccggaacag cggatctaga      5820
     gagaactcca agataacagc cggagaagag gtgcaagtct catttcgttc ccgaagaaag      5880
     gggagaatgt gaggagttaa ataactcctc acaaataaat gagagtttgg agaatacagc      5940
     tgggagagtt tggaggaata cagctggtga gagtttggag aaacagagag tttggagaat      6000
     acggctggag agagtttgga gagaacggct ggagagagtt tggagaaagg agagagtttg      6060
     gagagaacgt gtaacggtag aaggcggcgg actttggacc gagtatggtg ccgtgcgcaa      6120
     aaccgaaaaa ggagaagccg agaattaacg ggatacgccg gcctatataa gcgggccgag      6180
     cgcaggaagc gggatcagtc gatcacaagg agtcaatcca gcaagatcag tagacaagca      6240
     gaaaaccagt gaacaamaca agtcaagtca acatcaggag gaagcagagc cgcgccgagt      6300
     caacaggagc aagatcgcta catcaagacg ttcgggactt agagttgaag tctccgagc       6359
//
ID   Gypsy-9_DRh-LTR repbase;    DNA;    INV; 1053 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.08, Created)
DT   12-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila rhopaloa genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DRh_;
KW   Gypsy-9_DRh-I; Gypsy-9_DRh-LTR.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1053
RA   Jurka J.;
RT   "LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1568-1568 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1053 BP; 270 A; 287 C; 316 G; 179 T; 1 other;
     tgagaaacag gtagctgagg tccttaaggc atcacgcggc taagtccagg cgctttgttc        60
     taattctkgt cgcgatttga gcttggcgta ttgctcggcg agtccgacag aagtgaataa       120
     aaagagtcct tcgacaaaga accgtgggct cggaagggaa gttgtccaga accagctgcc       180
     gtgcgaaaac aattgccttg tcgaattccg gcgtacgcct gaaccggcag gcgagaattg       240
     tgcaggccct ggtgcgacta gccaagaagg acgcgcgtcc gaaccacggg tgtctcgaga       300
     ggcgtatgcg tcgagagcac agtagttcac cgccagagtc ctagacaggc agctgaccga       360
     atcccgagag ccaaagaccc gctgcaccta gtctcacaag agcacgcgga caacggagcc       420
     aggattcgcg ccgtgagcag agcgaggaca tcgaggacac gagaaacgac gagcagtcat       480
     cgcaggccca gcagcaacca agccacactc cgacgtatcc agtccacggc taagaggcga       540
     gggcggaagc gttcgtcttg aacctagcgt cctgccacag ggactgcatt ggcggccttc       600
     cggcgtatgc ctgaaccgtc aggtagaaac tgtgtaggcg tctggtgtga ccggccggga       660
     cagatccagg gacaggaggc tgtggctgcg aaaggcgtac gctttgagag cccagtgcct       720
     gttcacccta gtctgggaac ggtgacgcat ccctagaccc tcatagcccc gaggccaaag       780
     acaacggagg cgttccggac cagcgagcag cgagcaacga ggcagcggag agcgacggtg       840
     gagcagccac aattctcaag gaaggcgttg agacaaccat ctgtcaccat tagtcccagg       900
     ccgagggaca agtcggcgaa taaagatcct agtataaaca tcctaacatt ctgtgcgttc       960
     tcactagaca atcgggcggt cacgtttata taaatttggt gggacgaaca acacacatct      1020
     tctgagctag ccgcacgata ctcgtagcga gca                                   1053
//
ID   Gypsy-9_DSer-I repbase;    DNA;    INV; 6146 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DSer-I.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6146
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1985-1985 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1554
FT                 /product="Gypsy-9_DSer-I_1p"
FT                 /translation="MAHDNGQMPQADLLEQLAIRERQLEQLQQAYVQLQGN
FT                 GNNPAQQERLFKNINSLATFTGTGEISINSFFSSVEYLLQTIEDPQLKREA
FT                 TRTIFYRTIQGQAKDAVINIPEPDNWNLIKATLKLRYRPDTEPHQIYKRIC
FT                 DLRVNSVSELAVEIQNIKYKNDELIVYHMNDNFIDLSNVESLLVNTAKEMT
FT                 QGTLLDKIYEVRDLSTILKIMVQRRYENSCIRYQYRKGRTNQNNYRNNNQN
FT                 TNQQYNQQNNTMQNAYQNKNTNQQYNLQNNTMQNVHQNDQSNNSRQVRQNN
FT                 TPQNFRGNNSGQSRRYQNNQWNQQAGSHQSRQNRPVNVVPMEVDNIEANQH
FT                 QNNTDQSRYENDNYNSDHNLNNKHDNNQMENYPQAGVNNTVFFTKPPRMGY
FT                 H"
FT   CDS           1515..4787
FT                 /product="Gypsy-9_DSer-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H and integrase."
FT                 /translation="YGFFYEAASDGLPLIELNIDKQKYVALIDTGATLSLV
FT                 SDQINGYRKMRLNTPIPYTTINSKDVITYEIHTTAPKEFNLPNNARVRWKL
FT                 APLKGRKYNFIIGIDLLNFLNAFINIERKVLTLNQKENVIINNPYQYEEVS
FT                 VLESSSKNLENLKLDHLNEEEVREIKVIVQKFSKLFFKEGDQLTSTTEIEH
FT                 EIRTSTEEQLNSKLYRYPPQHEEEVRKQIKEMEEQGIIRKSNSRYSSPLIV
FT                 IPKKIDNSGKKKFRIVIDYRKLNEVTIDDKFPIPNINSILDKLGRAQYFTT
FT                 IDLAKGYHQILVRESDREKTAFVTPHGLYEFIRMPFGLKNAPATFQRLMNE
FT                 ILRDHINKKCVVYLDDILIFSTSLKEHIQAINEIFQILEKKKLKIQIDKCN
FT                 FMKKETEFLGHILTKEGIKPNPNKISIIEKLGLPRTEKQIKSFLGITGYYR
FT                 KFIKDYAKVAQPITKYLKKNVKINLKDPTYVEAFEKLKHLISSHPILRYPN
FT                 FEKKFTLTTDASNYAIGSVLSQDGHPICFASRTLNNHEKNYSATDKEFLAI
FT                 LWSVNYFRPYLYGNKFKILTDHQPIKFLHSKHKGKDISPRHQRWLLKLGEY
FT                 QFEIDYLKGKENRVADFLSRLEDSDLTNKTENERDNNEYKDNISDINMIAN
FT                 IEDNLSTSTVHSAEENLHNHFYIKEEIVNKYKTQIIITDSKTDGYKTIHGK
FT                 AIIFIAKHDFPTMGDIFRKYIHKGKVGIYSELSYQEYNIVQEKLIEMFSDN
FT                 KQLEFIKCTLRAQDIEHETEAVRQISFYHVRESMHSGIQETYNQLKNKIYF
FT                 PKLLELVQMVINQCDFCKEIKYDRNPIKNKFSKTETPSDKNQIIHVDTYVI
FT                 KNTHFLTTIDKFSKFAAVYPLNDRNHITIVEQLEEHFTKIGKPGKIIADNE
FT                 FDSFRIKELLRQEGIELHLTKPNSHTGNSDVERLHNSLAEKFRITYKTEAS
FT                 NMSVKQIMQRAVRNYNERYHSTIKCTPSEAHNNKIELTKIKENIDSKKQKM
FT                 LERHNGNREHYEEKREEGFIKNYKAVRHKEAPKFKKANLGNIDPINIKRPY
FT                 KFTENTNDDYVADDNTNDNGNNNNSGNTNDSRNT"
FT   CDS           4669..6144
FT                 /product="Gypsy-9_DSer-I_3p"
FT                 /note="Baculovirus F protein."
FT                 /translation="ILNALINLQKILTTTMLLTTILMTMAITTTAGTLTIQ
FT                 EIPDQDGYAQIEMKNQDIIITTDIVVHIINLKDIDNILNEIGKNIEMTNND
FT                 NKHILQSELTETKNKLYTLYGNHNRERRGLINVVGSSAKWLFGTMDDEDRK
FT                 EVENHISTFKENMQETEEALNKQIYINTYFNDTIKYIEQIVKSDREAIERQ
FT                 LNAISKFENNRYQENLYYDQQIKIQLIKNKIEHLQDNVASARYNILHPSIL
FT                 TDHEIKKYNIDFNKLNHIKLATAMFRNNLLVFAIEIPKNFTTVKIHQIIPM
FT                 PNEENFEIDQESELIFNYKNSTYTYKTNKKLKEMRKSKHCVFKKNCKLIQR
FT                 KEMQILELDEETVVIKNAKNETLYQNCNSNEIKMKKNILIHFTNCTIGIEN
FT                 NYFTNSYELDKKRIVYEKSNQTQNFTKQITFEKILENNKINWSNIRKLKTH
FT                 KDINYFFNATILLSIIVLIAYIVLKHKKIKIQLNNNRIQENSYLKGG"
XX
SQ   Sequence 6146 BP; 2738 A; 1006 C; 998 G; 1404 T; 0 other;
     ggcgcagccg gtaggatcct ttttaattaa agagggtcca gtgattattc aaatcgaact        60
     taacgtgaag aaaaaaatat atatataaca aaaaattttt tgtgaaaaaa aaaaaaatac       120
     aaaaagtcag cgaacagaag cgaactaaaa atcagtccgc taagtgaacg tggtgcagtg       180
     catagaaaag tgcattgatc aaagcaaaac cggaccaagc ggcgcaacag cattaaatcc       240
     aactaaaaat cagtggatta acgcctgtag agatcgaact aaaatcgact tagacagcgc       300
     caagaaggaa atcaactcaa cctggatata agaaggcagc gaaggatcgc ttcatacgac       360
     aataacagga tggctcacga taacggccaa atgcctcaag cggatctttt ggaacaattg       420
     gccataaggg aaagacagct ggagcaactg caacaagcgt atgtacagct ccaaggaaat       480
     ggaaacaacc cagcccaaca agagcggttg ttcaaaaaca tcaatagttt ggcaaccttt       540
     acgggaaccg gggaaatctc catcaactcc ttcttcagta gcgtggagta cctgttacag       600
     acgatagagg acccacaact caagagagaa gccacaagga caatattcta caggacaatt       660
     cagggtcaag caaaggatgc agtaataaat atcccggagc cggacaactg gaacctgata       720
     aaagccacct tgaagttaag gtacagacca gacacggagc cgcaccaaat ctacaagagg       780
     atatgtgacc tgagagtgaa ttcggtgagc gagcttgcag tagaaattca aaatataaaa       840
     tataaaaatg atgaattaat tgtgtatcat atgaatgata attttataga tttaagtaat       900
     gtcgaaagtt tattagttaa cacagccaaa gaaatgacac aaggcacttt actagacaag       960
     atctacgaag tcagagattt aagtactata ttaaagataa tggtgcaacg cagatatgag      1020
     aatagttgca ttaggtatca gtataggaaa ggtagaacta atcaaaacaa ttacaggaac      1080
     aacaaccaaa ataccaatca acaatataat cagcaaaaca atacaatgca aaatgcatat      1140
     caaaataaga ataccaatca acaatataat ctgcaaaaca atacaatgca aaatgtacat      1200
     caaaatgatc agagcaacaa ttcaagacaa gttagacaga acaatacccc tcagaatttt      1260
     agaggcaata actccggaca aagtagacga tatcaaaata atcagtggaa tcaacaagca      1320
     ggatcacatc agtctaggca aaataggcca gtaaatgtgg tacctatgga ggtagataac      1380
     atagaagcca accaacacca aaacaatacc gaccaaagca gatacgaaaa tgacaactac      1440
     aacagtgacc ataacttgaa caataaacat gataataatc aaatggaaaa ctacccacag      1500
     gcaggagtca ataatacggt tttttttacg aagccgcctc ggatgggtta ccattaatag      1560
     aacttaacat agacaaacag aaatacgtgg ccttaataga cacaggagcc accttgagtt      1620
     tagttagcga ccagattaac ggttacagaa aaatgagact aaatacgccc ataccataca      1680
     ctacaattaa cagcaaagac gtaataacgt acgaaattca taccacagcc ccaaaagaat      1740
     ttaacttacc aaataacgca agagtacgat ggaaattagc cccgcttaag ggaagaaaat      1800
     acaattttat catagggata gacctcctaa attttttgaa tgcatttata aacattgaga      1860
     ggaaggtttt aactttaaat caaaaagaaa acgtaattat aaacaatcca tatcaatacg      1920
     aagaagtttc ggtattagaa agtagcagta aaaacttaga gaatttgaaa ctcgaccact      1980
     taaatgaaga agaagtcaga gaaattaaag tcattgtaca aaaatttagc aaactttttt      2040
     ttaaggaggg agaccaacta actagtacga cagaaattga acacgaaata cggaccagta      2100
     cagaggaaca gttaaactca aaactttata gatacccacc acaacacgag gaagaagtta      2160
     ggaaacaaat aaaagaaatg gaagaacagg gtataatcag aaaaagtaat tcaagatact      2220
     ctagcccact tatagtaatc ccgaaaaaga tcgacaactc aggaaagaaa aagtttagga      2280
     tagtaataga ctacaggaag ttaaatgaag taaccataga cgacaaattt cctattccga      2340
     acattaattc tattttggat aaactaggaa gagctcaata cttcactaca atagatttag      2400
     ccaaaggcta ccatcagatc ttagtccgag aatcagacag agaaaaaacg gcattcgtaa      2460
     cgccacatgg actatacgag tttataagaa tgccatttgg gttgaaaaat gcccctgcca      2520
     cattccaaag acttatgaat gaaatactta gggatcacat taataaaaaa tgcgtcgtgt      2580
     atctagacga tatacttatt ttcagcacct cattaaaaga acatattcaa gctattaacg      2640
     aaatattcca aatattagaa aagaaaaaat taaaaataca gattgacaag tgtaacttca      2700
     tgaaaaagga aactgaattt ctaggacata tccttacaaa agagggcatt aagccaaatc      2760
     caaataaaat ctcaatcata gaaaaattag ggttaccacg aacagagaag caaataaaaa      2820
     gcttcttagg tataacaggt tattacagaa aatttataaa agattatgct aaagtagcac      2880
     agccaataac caagtatttg aaaaaaaatg ttaaaataaa tctaaaagac cccacctatg      2940
     tcgaagcatt tgaaaaatta aaacatttaa tcagttctca cccaatttta agatatccca      3000
     actttgaaaa aaaatttaca ttaactacag atgcatcaaa ttatgcaatt ggatctgtcc      3060
     tatctcaaga cggtcatcca atctgctttg catcaagaac gctaaacaat catgaaaaaa      3120
     attactcagc aacagacaaa gaattcctag caatactatg gagcgtcaat tatttcagac      3180
     cataccttta cgggaataaa ttcaaaatat taactgacca ccagccaata aaattcttac      3240
     actcaaaaca taaaggtaaa gatatttcac ctagacacca gagatggtta ttaaaactag      3300
     gagaatatca atttgagata gattacttga aaggaaaaga gaacagagtg gcagattttc      3360
     ttagcagact ggaagacagc gaccttacga acaaaaccga aaatgaaaga gacaataatg      3420
     aatacaaaga taatatttca gacataaaca tgatagcaaa cattgaagat aacctctcaa      3480
     catcaacggt acactcagct gaagaaaatt tacacaatca tttttatata aaagaggaaa      3540
     tagttaacaa atataaaaca caaataatta ttacagacag taaaacagac gggtataaaa      3600
     caatacatgg aaaagcaata atatttatag caaaacatga ctttccaaca atgggagata      3660
     ttttcaggaa atatatacac aaaggaaaag tcggaatcta ttcagaatta tcgtatcaag      3720
     agtataacat agtacaagaa aaactaatag aaatgttttc agacaacaaa caattagaat      3780
     tcataaaatg cacactcaga gctcaagata ttgaacatga aacagaagca gtaagacaaa      3840
     tttcgtttta tcatgtaaga gaaagtatgc actcaggaat tcaggaaaca tataaccaat      3900
     tgaaaaacaa gatttacttt ccaaaattgt tagagttggt gcaaatggtt ataaatcaat      3960
     gcgatttttg caaagaaata aaatatgata gaaatcctat taaaaataaa ttcagtaaaa      4020
     cggaaacccc atcagataaa aatcagataa tacacgtgga tacatatgta ataaaaaata      4080
     cacatttttt aacgaccata gataagtttt caaagttcgc agcagtatac ccattaaatg      4140
     atagaaatca tatcacgata gtagaacaat tggaggaaca ttttacgaaa ataggcaaac      4200
     caggtaaaat aatagctgat aacgaatttg attcattcag gattaaagaa ctactaagac      4260
     aagaagggat agaactacac ttaacaaaac cgaatagtca cactggcaat tcagatgtag      4320
     aaagactaca caattcatta gcagaaaagt ttagaataac atataaaacg gaagcgtcga      4380
     atatgtcagt aaaacaaatt atgcagagag cagtgagaaa ttacaatgaa agatatcact      4440
     ccacaatcaa atgtaccccc agcgaagcac acaacaataa gatagaattg acaaaaataa      4500
     aagaaaatat agatagcaaa aaacaaaaaa tgttagaaag gcacaacggc aacagggagc      4560
     attatgaaga aaaacgagaa gagggtttta taaagaacta caaggcagtc agacacaaag      4620
     aagctccgaa attcaaaaaa gcaaatctcg gtaatattga cccaataaat attaaacgcc      4680
     cttataaatt tacagaaaat actaacgacg actatgttgc tgacgacaat actaatgaca      4740
     atggcaataa caacaacagc gggaacacta acgattcaag aaatacctga tcaggacggg      4800
     tatgcgcaaa tagagatgaa aaatcaagat ataattatca caacagatat agtagtacat      4860
     ataataaact taaaagatat tgacaatatt ttgaacgaaa taggaaaaaa catagaaatg      4920
     acaaacaacg acaacaaaca catattacaa tcggaactaa ctgaaacaaa aaacaaattg      4980
     tataccctat atggaaacca caatcgcgaa agaagaggat taattaatgt agtaggtagt      5040
     tcagcaaaat ggttgtttgg aacaatggac gatgaagaca ggaaagaagt tgagaatcat      5100
     atctctacat ttaaagaaaa catgcaggaa acagaggaag cattaaacaa gcaaatttac      5160
     ataaatacgt atttcaacga tacaataaaa tacattgaac aaatagttaa atcagataga      5220
     gaggcaatag agagacaatt gaatgcaatt agcaaattcg aaaataacag ataccaggag      5280
     aacttatatt acgaccaaca gataaaaatt cagttaataa aaaataagat tgaacatttg      5340
     caggataacg ttgcttctgc tagatacaat atattacatc ccagcatatt aacagatcac      5400
     gaaataaaaa aatacaatat cgatttcaac aaactaaacc atataaagtt agctacggct      5460
     atgttcagaa ataatctttt agtattcgca atagaaatac caaaaaactt tacaacagta      5520
     aaaatacatc agataatacc gatgcctaat gaagaaaact ttgaaataga tcaggaatca      5580
     gaattgatat ttaattataa aaattcaaca tacacctata aaacaaataa aaaattaaaa      5640
     gaaatgcgaa aaagtaaaca ttgtgtattt aagaaaaatt gcaaactgat acaaagaaag      5700
     gaaatgcaaa tattagaact agacgaagaa accgtagtaa ttaagaatgc aaaaaacgaa      5760
     acattatatc aaaattgcaa cagcaatgaa attaaaatga aaaaaaatat tctaatacac      5820
     tttacaaatt gtacaatagg tatagaaaat aattatttta caaattcata cgaattagat      5880
     aagaaaagaa ttgtatatga gaaatcaaac caaactcaaa attttactaa acaaatcact      5940
     tttgagaaaa tattggaaaa taataagatt aactggtcga acataagaaa gttaaaaaca      6000
     cataaagaca taaattattt ttttaatgca accatacttt tgtcaataat tgtattaatt      6060
     gcgtacattg ttttaaaaca caagaaaatt aaaattcagc tcaataacaa tagaattcag      6120
     gagaattctt atctaaaagg gggaga                                           6146
//
ID   Gypsy-9_DSer-LTR repbase;    DNA;    INV; 448 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Drosophila serrata genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DSer-LTR.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-448
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1997-1997 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 448 BP; 170 A; 89 C; 53 G; 136 T; 0 other;
     agttacgtat aaccccactt cacttcccgc atatgtccaa agcccaattt cttctttacc        60
     acctcttaat aataaagttc aagaattgct taactcaata aatgctaaat aaacaatata       120
     ttaaacagga aatgcacagg ttaacgatct ggcacatgcc aaccaaaatg agttctaaga       180
     aaatccaaat aagcaacata acacagtaaa caggaaatgc atagttcatc gatcgttatt       240
     aaattcaggc taactaaagg ccaacgatct gacacatgta aatcagaata attaataagc       300
     acttctgtaa acctaaatta agttttcttt aaaacattat gaataaagaa taatcagttg       360
     atttttgccc accaaaaccg ctggatgtgt tttttattca cgaataattt attttttttt       420
     aacttcgcga ctccctttta acaaaatt                                          448
//
ID   Gypsy-9_DSim-I repbase;    DNA;    INV; 3241 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3241
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1521-1521 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. Likely internally deleted.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..987
FT                 /product="Gypsy-9_DSim-I_1p"
FT                 /note="Gag."
FT                 /translation="MQTPKASATDEKGKHITLPKFHPEGAGADASAWCTTV
FT                 DLIFADKMPEGSSLMITLSKALEGSASQWLSQICFAGITWPQFKELFVQRF
FT                 VGIETSTATLMKILNGRPKSGESYTEYGSRIVTLLMSKFKSIDLEEIAVSL
FT                 TLAHMAQIDDKLSRWVFTNNIKTRNDMQQQLQAHTFKKRNLDDDASTTDPE
FT                 RKKSKYLSQVECNYCGKTGHKYAECRARQRSQNQGKSHNGSSTQGSKDRLT
FT                 VKCFKCDELGHFASACPKGRSRGNDQVTEKRVDICTVAPPSGIVRSSTGES
FT                 VPYFF"
XX
SQ   Sequence 3241 BP; 1131 A; 522 C; 774 G; 813 T; 1 other;
     tcagaagtgg gatctgcttt gcctacaaat atcaccgatg catacctggc agctttacaa        60
     gtgcaaaaca acaacctatt ggagatcatc aaaaatatgc agacaccaaa ggcatcggca       120
     actgatgaaa agggaaaaca tataactctc ccaaagtttc atcctgaggg agctggtgca       180
     gatgcctcag cttggtgtac aacagtggat ctcatttttg ctgataaaat gcccgaaggt       240
     agcagcctga tgataacttt aagtaaggcg ctagagggaa gtgcatcaca atggctgtcc       300
     caaatatgct ttgctggcat cacatggcca caatttaaag aactcttcgt tcaacgcttc       360
     gttggcatcg aaacgtctac tgccacactg atgaaaattt tgaacgggcg accaaagtct       420
     ggagaaagtt acaccgaata tggaagccga atcgtcacct tacttatgtc caaatttaaa       480
     tctattgatc tggaggaaat tgcggtttca cttactctgg ctcacatggc acaaattgat       540
     gacaaattgt cgcgctgggt ttttacaaac aatattaaaa ctcgaaatga catgcaacaa       600
     caactacaag cgcacacttt taaaaaacgg aaccttgatg acgacgcatc tacaacagac       660
     ccggagcgta aaaagtctaa gtatctctct caagtggaat gcaattattg tggaaagact       720
     ggacataaat atgctgaatg tcgtgctcgg cagaggtcac aaaatcaagg aaaaagtcac       780
     aacggaagtt caacgcaagg atcaaaagac cgattaacag tcaaatgttt caaatgcgac       840
     gagcttgggc acttcgcatc cgcctgtcca aaaggacgat cacgaggaaa cgaccaagta       900
     accgagaaac gtgttgacat ctgtactgta gctccaccat caggaatagt aagaagttca       960
     accggtgagt ccgttccata ctttttttga ttccatattg aaagagggat tagcggatgt      1020
     gttcatggaa ggatgaatta gtggtgctgt gcttatgagt ggcaaattct agctacgtaa      1080
     agatttgtaa ttttaatttt ataaataaaa aaagattcga tataagaaat aagattcaat      1140
     gtaggcgacc atgtcttgct caagagtgaa gagcggcatc aaacaaagct aaacccaagg      1200
     tttggggcca tatgtaatgg cggaaaagct tgatggtgac cgatatgtgt tgagatcttt      1260
     gacaagcaag agaacgtata gtaggcccac gaatagttat ggtcgatgcc tgttgaggta      1320
     gacgcagacc aatgcgagag atcgccgact gaggcactcg tagagaccaa tgtgagagat      1380
     cgccgactga ggcactcgta gagaccactg cgagagatcg ccgactgagg cactcgtaga      1440
     gaccatagac tctgagttaa ttattcacaa ggctacagat atgagggtcc ggagagacca      1500
     tgacgcatga ggatgcgtga gatcgttgca aggagtgcag caagagcctg acagtgtgac      1560
     ataatagaga caaaagagag agaatggtaa ggtaaagaat gaaaaaagaa agaagtgcgg      1620
     caagagatac gattactgtt tgatcaaaag aaatgaagtc ataaaatgta aattgcaaaa      1680
     aagaaaagct tgagcaaggc aagggatgcc gatatgttat ttgataaaaa tgtttcggat      1740
     attgatgaaa taatgaagtg aagttgagga atataaggaa agcaacgaga gggcgacgtg      1800
     aattagtctg gtttgaacga tcggagggac aacacgcagg gacgttgtac tgcggtatgg      1860
     agcgatcctg ttacataaaa ttgacataac ctcatgtgta gagtattacg gacgtaaatt      1920
     ttagtatata ctgactgtaa tttaaggcca gccgcacaaa actagattta acaccgaggg      1980
     tgcatagatg gtgggcgttt ttacaggcat ttgatttcga atagagtata gaaaaggcga      2040
     gcgaatggcg catgtggatt ttctctctcg aaatccagtg cttgaacaac agaaaggtat      2100
     gaataagatt tcagagttac gaatcaattt gaccgaggta tctgataact ggttggtttc      2160
     agaacaacag cgagatactg agatacaaga tataattgta aagttaaaga ataatgagtt      2220
     acgttattat gcatcttgga tgggaaaaga cgctggacaa agtctattgt tattatcggt      2280
     tcgaaaatat gtctaaatgt gtgcgtggat tcgtagaaga ttgcattaca tgtaaagttt      2340
     ctaagccact agcgggaaaa gtgcaggctg agctgcatcc tattcctaaa atagaagccg      2400
     agtctagtca gagatcatgg caggatgcgt tggctgaagt gcagctagca atgaatggca      2460
     cgattaatcg tgtgactaag tttagccctt tggaattatt gattggtaaa gaagctcgac      2520
     cttttggctt gttgccgcta aacgaaaata acgatgatga ggtagacaaa gaaaatttga      2580
     gaaaggaggc taaaaagaac atgaaagctc aagcagaata cgataaagat gagttatgta      2640
     aagacagggg cagcacaata ggagttgtgt ctgttgccca atagagaaac tgaagaccgc      2700
     accatagcag aagagacttg ttatggcggg ggtcgtttgt gtaaaaggaa ctacacaaaa      2760
     tataagttca gtttgtgtaa aaggaactac acaaaatata agttcagttt gtgtaaaagg      2820
     aactacacaa aatataagtt cagtwtgtgt aaaaggaact acacaaaata taagttaatt      2880
     atgtgtaaaa ggaactacac taaagatagg tttattatgt gtaaaaggaa ctacacaaaa      2940
     gataagttaa ttatttgtaa aaggaactac aaaatatgtt tgatttgaaa gattaagaga      3000
     aaaatgtgtt aagggaatta cacgagtggt atgatttgtt aaatttgagt tgtgttacga      3060
     aaatttaagt aatttagtca tgttatgata agactaaagt tgaaactaat ttgaatcaga      3120
     aatagattaa atggaaataa ttctttgaaa tatccagaga gtctttgaat cctgaagtgt      3180
     tatcacttat gtggtagatt taagacaaca cacgaggacg tgtattatgt caggaaggcc      3240
     g                                                                      3241
//
ID   Gypsy-9_DSim-LTR repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-362
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1522-1522 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 362 BP; 97 A; 75 C; 97 G; 93 T; 0 other;
     tgtcgcatta cggatgtatt ctgaccactg tacgtgtctg tcatattatt agcatggttt        60
     gaccactgtg cttgcaagac gcagctgcgc aatgagtttg gtatatcgtg aggacattct       120
     tagaatttga ctacaacgta gaatatgact ggcgccaaag taccgttacg agtgaggcga       180
     cggcgttgtc gcgctgtcgc caagtgtagt ccagctaggg tgtgtaaagg atagatcgat       240
     gcgtagaaaa tacgatcagt tgcatacaga cgatcgcgca cgccggttgg aattcgcttc       300
     actcgaaaag tttatttgcc aatatggaag atcaggcgca agaaaatgcc aacgctgcga       360
     ca                                                                      362
//
ID   Gypsy-9_DTa-I repbase;    DNA;    INV; 5608 BP.
XX
AC   AFFI01009598;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DTa_;
KW   Gypsy-9_DTa-LTR; Gypsy-9_DTa-I.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5608
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009598; Positions   19476   13869.
XX
CC   Positions [3005-3511] - Reverse transcriptase
CC   Positions [4663-5049] - Integrase core
CC   'CATA' target site duplication
CC   LTRs are 94% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..4726
FT                 /product="Gypsy-9_DTa-I_1p"
FT                 /translation="MPDTDLNQFTVVQLKTWLSALGLQTSGSKAELMARLQ
FT                 TLSAEARGDPPIKTTTRLEQPPETDVDGAASLPLEQQLENAGALIDSDPMT
FT                 SQPVNDIRMEQLSLVDVERAMLQKIRDEIEANKTVLQRIQSEIDDVTRNKT
FT                 NLVQQLFHDVIDNSFEESGNPNDCAYSTTVNVNSNEANINRGIEIDKSSTG
FT                 EDIENSVGQRQVSNVNKLLESPTTSLALAEVTMDYDGNLCARSWVTQLQNI
FT                 AQVYKLDTFGIRMLLIAKLKGKAQIWLHANATRILEPTDRLCEQLVLTFGA
FT                 KMSKGELRNAFQSRQWRSGEKFATYFDEKIMLANDINIDKEELLENIIDGI
FT                 PSTGLRDQARIQCFSEPMQMLKAFSGIHLPQRKQEANSSQRSSEKTTATKD
FT                 FRCVNCNSKGHYAKDCRKPKREPGSCYACGKFGHFVGQCPERKSANTNKYV
FT                 RYIKIFFYNSSETPLISACLIDTGSPISFAKRNIISSKIKIESVSENYFVL
FT                 NKSQLKIYGRILCYIIKEKLKCYFYLYIVPAESMSHEVVLGRNFMDACKLE
FT                 LDLNVLKMVTIEPANTEHIVNVNNTPNPDTCNLTQKLSLHHEPKSAIEIPR
FT                 NNIAVSNTVSNTVNQTVSPTVSEMINETVSPTVSPTVRTTVSTTVSPTVST
FT                 TVSPTVNTTVSPTVSTTVSPTVIPTVNKTVSETVKPTVSTMVKPTVSTIVG
FT                 NTISHTVSEIVNKTVRETVSPTVSTTVSPTVKTTVGETCSPTVSTTASPTV
FT                 STTVSPTVSKTVSPTVTTRVSPTVSTTVSPTVSKTVSPTVSTTVSPTLSTT
FT                 VSPTISTTASKAVSPTVSRTFSQTVRDTVSDTVKTADETVTDTVSQVVSDT
FT                 ASYKDSGTIGKVVSKIVNKKDNSEISKSIDPTVFNLVSNGALASNKSENDM
FT                 STAIRDILNINYMDDEKTDYLCGTNDNQDLIRQLKEIIENHYVKVDKPKEP
FT                 FIKSEIKLILENSKPFSCAPRRLAYAEKEKLQKLLDDYLENGIIQPSQSEY
FT                 ASPIVLVKKKTGDIRLCIDFRKLNKVLIKDNYPIPLIDDLLDKLVNKKVFS
FT                 KLDLKNGYFHVFVNKESVKYTSFVTPLGQFEFLRMPMGLKTASAVFQRFIN
FT                 RIFDDLIRNNQVIVYMDDIMIASKDIDEHFQILKEVFFRLAKNKLELRMDK
FT                 CEFLQSSIKYLGFIINGEGIRADDKGIEAIQNFPIPDKTQSVQSFLGLCSY
FT                 FRRFIKDFSTLAKPLYDLLKKDEKFHFGEKEMSCFVMLKQKLVEAPVLAIY
FT                 NYKDEVELHCDASSLGFGAVLLQKKEDGKLHPIFYFSKRTTVAESKYHSFE
FT                 LETMAIIHALRRFRIYLFGRHFKIITDCNSLTLTLNKIELNPRIARWALEL
FT                 QNYDYDLIHREGNKMQHVDALSRCSNILVVETNSFEDNLVICQAKDPKIQV
FT                 IKNQLEENEHKLFEMRNGIIYRKSNDGRLLFYVPIDMEEHILFKYHNEIGH
FT                 IGRDKMLDIIGKSYWFPNAKDKCLSHINNCLKCVAFSPKIGKEGFLHSIPK
FT                 GSKPFELIHIDHYGPVDSGRSKKHIFVVVDGFTKVLYVYIQQRQRIPEKLS
FT                 "
XX
SQ   Sequence 5608 BP; 2022 A; 1071 C; 1097 G; 1418 T; 0 other;
     atatcagaag tggttcttac tcactatgcc tgacacagac ttaaatcagt tcacggtcgt        60
     tcaactcaag acctggttaa gtgcgctcgg gctacaaacc tcgggctcta aagcagaatt       120
     aatggcgcgt ctgcagaccc tctcagcgga ggcacgtggt gacccaccaa ttaaaacaac       180
     aactcgtcta gagcagccgc cagaaaccga tgtggacgga gccgcatctt tgccgctgga       240
     acagcaattg gaaaacgcag gggctctgat cgactctgat ccaatgacgt cacaaccagt       300
     taacgacatc cgcatggagc agctttcgct tgtggacgtc gaaagggcca tgttgcagaa       360
     aatacgagac gaaatcgaag caaataaaac cgtcttgcaa cgcattcagt cggagatcga       420
     tgacgtcacc aggaacaaaa ccaatcttgt ccaacagtta ttccatgacg tcatcgacaa       480
     cagcttcgag gagtctggca accctaacga ttgcgcttac agcaccactg ttaacgttaa       540
     cagcaacgag gctaacatca acagaggtat cgaaatcgat aaatccagta ctggagagga       600
     catcgaaaac agtgttggac aacgccaagt ctcaaacgta aacaaactgc tggaatctcc       660
     aacaacttcg ctcgcactgg cagaagtcac aatggattac gacggcaact tgtgcgcccg       720
     cagctgggta acacaactgc aaaacatagc gcaggtgtac aagttggaca cctttggtat       780
     acgaatgctt cttattgcca aactcaaggg aaaagcccaa atctggctac acgcaaacgc       840
     cacccgcatt ttggagccaa cagatcgcct ttgtgaacaa ctggtcttaa cctttggagc       900
     caaaatgtca aagggagagc taaggaacgc attccagagt cgtcaatggc gttctggaga       960
     gaagtttgcc acatacttcg acgaaaaaat catgttggcg aacgacataa acatcgacaa      1020
     ggaggagctc ttggagaata tcatcgacgg aattccttct acaggactgc gcgaccaagc      1080
     gcgcatacaa tgtttctccg agccaatgca aatgctaaaa gccttctcag gaattcatct      1140
     gcctcaacgc aagcaggaag ccaattcttc gcaacgctca tcggaaaaaa ctacagccac      1200
     caaggatttc cgctgcgtca attgcaactc aaaggggcac tacgccaaag actgccgcaa      1260
     accgaaaagg gagcccggtt cctgctacgc atgtgggaaa ttcggacatt ttgttggaca      1320
     gtgtccggag cgcaagagcg ccaatacaaa taaatatgta agatatataa aaatattttt      1380
     ttacaacagt tctgagaccc cattaatttc agcatgcctc atagacactg gtagccctat      1440
     atcattcgct aaaagaaata ttatatcctc taaaattaaa atcgagagcg tctctgaaaa      1500
     ctactttgtg ctgaacaaaa gccaactgaa aatttatgga agaattttat gttacataat      1560
     aaaagaaaaa ttgaaatgct atttctacct ttacatcgtt cctgccgagt ctatgagcca      1620
     tgaggttgtt cttgggagga attttatgga tgcttgcaaa ttagaattag atttaaatgt      1680
     tctaaaaatg gtcacaatag agcctgcgaa tactgaacat attgtaaatg tgaataatac      1740
     cccgaatcct gatacgtgca atttaacaca aaaactaagt ctccatcatg aaccgaaaag      1800
     tgctatcgaa attccgagaa ataatattgc agttagtaac acggttagta atacagttaa      1860
     tcagacagtt agcccaacag ttagtgaaat gattaatgaa acagttagcc ctacggttag      1920
     tcctacagtt agaacaacag ttagcacaac agttagtcct acagttagca caacagttag      1980
     tcctacagtt aacacaacag ttagtcctac agttagcaca acagttagtc ctacagttat      2040
     cccaacagtt aataaaacag taagtgaaac agttaagcct acggttagca caatggttaa      2100
     gcctacggtt agcacaatag ttggtaatac aattagtcat acagtcagtg aaatagttaa      2160
     caaaacagtt agagaaacag ttagtcctac agttagcaca acagttagtc ctacagttaa      2220
     aacaacagtt ggtgaaacat gtagtcctac tgttagcaca acagctagtc ctacagttag      2280
     cacaacagtt agtcctacag ttagcaaaac agttagtcct actgttacca caagagttag      2340
     tcctactgtt agcacaacag ttagtccaac agttagcaaa acagttagtc ctacagttag      2400
     cacaacagtt agtccaactc ttagtacaac agttagtcct acaattagta caacagctag      2460
     taaagcagtt agtcccacag ttagtcgcac atttagtcaa acagttaggg acacggttag      2520
     tgatacagtt aaaacagccg atgaaacagt tacagataca gtgagccaag tagttagcga      2580
     tacggctagt tataaagata gtggaacaat cggcaaggta gttagcaaga tagttaataa      2640
     aaaagacaac tctgaaatta gtaaatcaat tgatccaacg gttttcaact tagttagtaa      2700
     tggcgcttta gcaagcaata aaagcgaaaa tgatatgtca actgcaattc gagatatttt      2760
     gaacataaac tatatggatg acgagaaaac agattactta tgtggtacaa atgataatca      2820
     agacttaata cgacagttga aagagataat tgaaaaccat tacgtaaagg tagataaacc      2880
     gaaagaaccg tttattaaaa gcgagataaa acttatttta gaaaattcga aaccctttag      2940
     ctgtgcccca cggagactcg cctatgctga aaaagaaaaa ttgcaaaaat tattggacga      3000
     ttatttagaa aacggaatca tacaaccaag ccaatcggaa tacgcttcgc ctatagtatt      3060
     agtaaagaaa aagactggag acatacgact gtgcatagac tttaggaagc ttaacaaggt      3120
     tttaattaaa gacaattacc caattcccct aatcgacgac ctattagaca aattagtaaa      3180
     taaaaaagta ttttctaaac ttgatttgaa aaacggttat ttccacgttt tcgttaacaa      3240
     ggaatcagtt aagtacactt cgtttgtgac accgttaggt caatttgagt ttcttagaat      3300
     gccaatgggt cttaaaactg catcggcagt gtttcaaagg tttataaaca gaattttcga      3360
     tgatctaatt agaaacaacc aagtgatcgt atacatggac gacataatga tagctagcaa      3420
     ggatattgat gaacatttcc agattttaaa agaagtattt tttagattag ctaaaaataa      3480
     gttagagttg cgaatggata aatgcgagtt cctccaatct agtattaagt atttgggttt      3540
     tattataaac ggcgaaggca ttagagcaga cgacaagggt atagaggcaa ttcaaaattt      3600
     tccgatccca gacaaaacgc aatcggttca aagttttctt ggtctatgtt cgtatttccg      3660
     cagattcatt aaagactttt cgactttagc caaacctcta tatgatctat taaaaaaaga      3720
     cgagaaattc cattttggag aaaaagagat gagctgtttt gtaatgctta aacaaaagtt      3780
     agtagaagct ccagtattag ccatatacaa ctacaaggac gaagtagaac tacactgcga      3840
     cgccagctct ctcggatttg gcgccgtact actccaaaag aaagaagacg gtaaactgca      3900
     cccaattttt tatttttcca aacgcacaac tgttgccgaa tcaaaatatc atagctttga      3960
     gcttgaaaca atggccatta ttcacgcatt gcgtagattt agaatatatc tatttggtag      4020
     acatttcaag attattactg attgtaactc tctcacattg acactcaata agatcgagct      4080
     caacccgcgt atagccaggt gggcattaga actacaaaat tacgactacg atttaataca      4140
     tagggaagga aacaaaatgc aacacgtaga cgcccttagc aggtgttcaa acatattagt      4200
     ggtagaaaca aattcgtttg aagacaatct ggttatttgc caagccaaag atccaaaaat      4260
     acaagtgata aaaaatcagt tagaggaaaa tgagcacaaa ttatttgaga tgagaaacgg      4320
     aataatttat aggaaaagca acgatggcag gttattattc tacgtaccta tagatatgga      4380
     agagcatatc ctttttaaat accacaatga gatcggtcac ataggtagag acaaaatgtt      4440
     agacataatt ggtaaaagtt attggtttcc aaatgccaaa gacaaatgtt taagccatat      4500
     taataactgt ctaaaatgcg tagcgttctc ccccaagata ggcaaagaag gatttttaca      4560
     ttcgattccg aagggcagta aaccctttga acttatccac attgatcatt acggtccagt      4620
     cgattcaggc aggtcgaaga aacacatatt tgtcgtcgtt gacggtttca caaaagtttt      4680
     gtacgtttat atacaacaaa gacaacgaat acccgagaag ttatcttagc cttaaaggat      4740
     tattttagag catacagcaa accaaaatgc ataatttcag ataggggaag ctgttttacg      4800
     tccaaagaat ttgacgattt tatgttagaa gtcggtgtta agcatatgaa aatagcgacg      4860
     ggatcgcccc aagcaaacgg ccaagtcgaa ggaataaaca gaagtctagg accaatgata      4920
     gcaaaactga tagaaccgga aaaaggtata tactgggact tagtaataga taaagtagaa      4980
     catgtattaa ataacacaca gcaccgcagt attaaacagt gtccaagcaa aattttattt      5040
     ggtttagagc agagaggaaa aatagtagac gagttaaaag agaaattgga agaattaaac      5100
     aatgaaccaa tagatagaga tttgacaacc attagaaacg atgctgaaat atgtcaagaa      5160
     aaagcacaag cgtacaacaa actgcaatac gataagacag ctagaaaacc ctcagattac      5220
     agaataggag attatgtaat ggttaagaat ttcgatagca cggcaggagt gtctagaaag      5280
     ttaataccaa agaacaaggg gccctatgaa atttcaaaag tattaaaaaa tgacagattt      5340
     ttgttaaagg atgttgaagg attccaggta tcacgcaacc cttaccaagg tgtttggagc      5400
     attaaaaaca ttaagcattg gataggaaaa agtcaaacat aataacagtt cgtgttctca      5460
     taattaaaaa ataaaccaat tgtaaaatat atttaagtag atatttctaa tatttctaaa      5520
     gtttcttaat tgtaacctat tatataagca taaaactatt gtaaatttcc actgtgatca      5580
     ggagatcatt cagtcaggat ggccgagt                                         5608
//
ID   Gypsy-9_DTa-LTR repbase;    DNA;    INV; 319 BP.
XX
AC   AFFI01009598;
XX
DT   29-JUL-2011 (Rel. 16.08, Created)
DT   29-JUL-2011 (Rel. 16.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DTa_;
KW   Gypsy-9_DTa-I; Gypsy-9_DTa-LTR.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-319
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Drosophila takahashii genome.";
RL   Direct Submission to RU (29-JUL-2011).
XX
DR   Genome; AFFI01009598; Positions   13868   13550.
XX
SQ   Sequence 319 BP; 107 A; 62 C; 54 G; 96 T; 0 other;
     tgtggtagga caaccacata tacacacaca tatagacata tacacacaca tacattattg        60
     cataactcac tgttccttaa tttaagcgct aaaacctaaa gctagttaac tgtaaatatt       120
     atatggtcat ccctttcttt catgtacttt tacataagag atcaattgta catatagttg       180
     tctcgctcac acgaatgagc gagcacaagg gagagcgtgg tctgaggcat cattctgcgt       240
     tttaccttcg aatgaagcgg ttgtgaaata aaagaagttc tattaaaata caaattcgga       300
     gtgcgtttaa cctattaca                                                    319
//
ID   Gypsy-9_DVir-I repbase;    DNA;    INV; 4183 BP.
XX
AC   scaffold_13045;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DVir_;
KW   Gypsy-9_DVir-LTR; Gypsy-9_DVir-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4183
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_13045; Positions 1191762 1195944.
XX
CC   Positions [1477-1902] - Reverse transcriptase
CC   Positions [3213-3470] - Integrase core
CC   'CATA' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1114..2685
FT                 /product="Gypsy-9_DVir-I_1p"
FT                 /translation="MDKYLKHEVLIGREVLSQGFGVSIDADKFCFYKTKRV
FT                 NVLSLVKYEEIINSDTNSNYSDKTILNNMLRCHSDRFIDGIPMTRVTAGQL
FT                 EIRLIDPQKTVQRRPYRLSEDERKHVRCKIDELLTSKIIRLSCSPFASPMM
FT                 LVKKKNGTDRLCVDYRVLNGNTIADKYPLPLISDQIPRLRGARYLSCIDMA
FT                 SGFYQIPVHPDSIERTAFVTPDGQYEFLTMPFGMKNAPSVFQRAIIKALGP
FT                 LAHTFAIVYIDDVMVVAKTKDEALERLEIVLDTLSKAGFSFNITKCSFLKT
FT                 KIEYLGFEITNVEIRPNARKIQALIGLPPPETVTQLRQFIGLASYSRQFIP
FT                 KFSEILKPLYMLTSKNNTNFGWLSEHEQIRLKIIGVLTQAPVLTIFDPQYL
FT                 IELNTDASSIGYGAILSHKIENKSYVVEYYSKCTSSAEAKYHSYELVTLAV
FT                 VNAMKHFRHYFQGRKFVVYTDCNSLKASRTKMEITPRVHRWWGFLQSFDFD
FT                 LEYRKGERMAHVEVTDNWLVSEQHEQHQ"
XX
SQ   Sequence 4183 BP; 1383 A; 730 C; 942 G; 1128 T; 0 other;
     tcagaagtgg gattagctcc gccaaaagag gacagctctt acttattaag ggcagcctta        60
     gaagagcaaa atcgtaatct aatggaaata ataaaatcca tgcaggcacc aagagcaccg       120
     acaatagacg ggagagcact ccacgtcact ctacccaagt tttgccctga caccgctata       180
     gcagatgcat cagcttggtg tactacagtg gacctaatct tcgcggataa tgctctcgaa       240
     ggcagtgcgc ttgtgattgc gttaagcaaa gcattagaag gcagtgcatc gcaatggctg       300
     tcccaaatat gcttcgctgg catcacatgg ccgcagcttt aggaactctt catccaacgt       360
     ttcgtgggca ttgagacaac ttctgccata ctgatgaaca ttttgaacgg acgtcccaaa       420
     actggagaga gttttgctga gtacggcagt cgcatagtca ccctattgct ctttaagtgg       480
     aaggcaaaga atttggagga gatcgctgta tcagtagcgt tagcccacat ggctcaaatt       540
     gataataatt tgttgcgttg gctgttaaca acgaatgtga cgactcgtaa tgagctgcag       600
     cagcagctac aggctttcaa gaagcgtaac aacgaggagg acggatattc gactggtccg       660
     gaaaggctgg ccacaaatat gcagaatgcc gctctcgaat gggtaaagca tcagccccaa       720
     cagaaaggag ttatagcgtg agcagcacgt ccggagtgaa ggatcgatca aaaattaaat       780
     gttttaagtg cgatgaaatc ggacatgtgg cttctgtatg ccccaaaaat cgtactggtg       840
     gaaacagcaa gagctacgag aagcgacctg acgtttgtac agtagctcca ccaagtggac       900
     caatacctta tccggtgggt ctattccata ttgtttcgat tctggagccg aatgttcact       960
     ggtcaaggag actgttgtcg aaaaattcac cgaaaaacga tttcacaata ttgtaacttt      1020
     aaatggcata acgattcaat ttgtagcaca ttgcaagttc tgagtaatat taatattgaa      1080
     caatattgtt tacaagtatt ataacatgtg tgtatggaca aatatttgaa gcatgaagtg      1140
     ttgattggcc gtgaggtttt aagccagggc tttggtgtat caattgatgc agataaattt      1200
     tgcttttata agacaaaaag agtaaatgtt ctgagtctag tgaagtatga agaaatcata      1260
     aattctgata ccaattcaaa ttattctgat aagacgatat tgaacaatat gttgagatgt      1320
     cactctgata ggtttatcga cggaattcca atgactcgtg tgacggcagg ccaattagaa      1380
     attaggctaa tagatccaca aaagactgtg caacgccgac cttataggct tagcgaagat      1440
     gagaggaagc acgttcggtg caaaattgat gaattgctta catcaaaaat aattcgtctc      1500
     agctgttcac cattcgctag tcccatgatg ctggttaaga agaaaaatgg cacagatcgt      1560
     ctttgtgtag attaccgcgt tttaaatggc aatacaattg ccgataaata tcctttgcct      1620
     cttatttcgg atcaaatacc gcgtcttcgt ggtgcaaggt acttgtcgtg tatagatatg      1680
     gcaagtggat tttaccaaat cccagtacac ccagattcaa ttgagcgaac ggctttcgtt      1740
     acacctgatg gacagtacga attcttaacc atgccctttg gtatgaagaa cgcaccttct      1800
     gtgtttcagc gtgcaataat aaaagccctg ggtccgttgg cacacacatt cgcaattgtt      1860
     tacattgacg atgttatggt agtagctaaa acgaaagatg aagcgttaga acgactagag      1920
     atagtgttgg acaccttaag taaagccgga ttttcattta atataacgaa atgttcgttt      1980
     cttaaaacta aaatcgagta ccttgggttt gaaataacga atgtagaaat tcgtccaaat      2040
     gcacgaaaga tccaggcatt gatagggttg ccacctccgg aaactgtaac tcaattacga      2100
     cagttcattg gtttagcttc ttactctcgg caattcattc caaaattttc cgaaatattg      2160
     aaaccattgt acatgcttac ttcaaagaat aatactaatt ttggttggtt gtcagagcat      2220
     gaacaaatac gtttgaaaat aataggtgta ttgacacagg ccccagtatt aactatattt      2280
     gatccacaat acctaataga attgaacaca gatgccagct ccattggtta cggggcgata      2340
     ttgtcacata aaatcgaaaa taaatcctat gtagtggagt attatagcaa atgtacttct      2400
     tcggctgaag caaaatacca ctcgtacgaa ctcgtgactt tagcagttgt caatgctatg      2460
     aagcatttta ggcattattt tcaaggtcgt aaatttgtcg tttacacaga ttgtaactct      2520
     ttaaaggcca gtcgcaccaa aatggaaata acaccgagag tgcatagatg gtgggggttt      2580
     ctacagtcat ttgatttcga tctcgaatat agaaaagggg agcgaatggc gcatgtcgaa      2640
     gtgaccgaca attggttggt gtccgaacag cacgaacagc accagtaacg agttaccgga      2700
     aaatttaagt aaaacatttg aattaaggaa gggcatattg catagaaaaa tacagagaaa      2760
     tggtaaaaca aggtgcttgc cggtaattcc aagggcgttt aggtgggcag tgatcaacca      2820
     cgtacatgaa tctgttatgc atttggaatg ggaaaaaaac attggatgag gtatatggat      2880
     attactggtt cgagaatatg tccaagtatg tacgtagatt tgtggaaaat tgtatcacgt      2940
     gcaaactagc gaaaccccca aatggaaagg tccaggcaga attgcataca attcctaaga      3000
     tagagatacc atggcacaca gtacacatcg acataacgag taaaatgagt ggcaaaaacg      3060
     acttgaagga atacgtcatt gttttaatag atgccttcac ctagtttgtt tatttttacc      3120
     acacactgaa tatagacact gaaagttgta ttaaaactgt gaaatcggtt gtggcgctat      3180
     ttggggtgtc aactagaata atagcggact aaggtcgttg ttttgctagc tcaggctttc      3240
     gcaatttctg ttccgctcaa aaggttcaac tgcatttgat cgctaccgga gctagtaggg      3300
     caaatgggca gcttgaacgt gtgatgagca cacttaagac aatgctgacg gcagttgaaa      3360
     cgagtcagag atcatggcag gacgcattgg ctgaagtaca actggccatg aattgtactg      3420
     caaatcgagt caccaagttt agcgctttag agctattaat aggaaaagaa gctaggccgt      3480
     ttggtttatt gtcaataaac gaagaagaca atgatgtaga tagagaacaa attaaaattc      3540
     aagccaagga aaacatggaa aataatgcaa gatatgacaa acaaagattt gacaaaaata      3600
     aggcaaagat tatgaagcat aacgtaggtg atcatgttac tgaaaaacga agaacggcat      3660
     caaacaaagc tcgaccctaa atttaaaggt ccatttgagg tgatcaaagt cttagacggc      3720
     gatcgatata aactaaaatc attggttaat aagcgaacgt ataaatattc acatgagtgg      3780
     ctaagagcgc taccaagcag acaaataatt aactaattaa acgatgaatt cgatggccta      3840
     agtgattggg tgtgattggg tgtaagtgtg cacaccaaat taaattgaga aactgagaga      3900
     caattctaag ttatgtaaaa tctgaattat tggaattaaa tgatatgaat aagatcatga      3960
     agttgaaaaa gtattatgtt tttaaacaaa aggaaattgt gtttcttaga taagaaaaat      4020
     tgtcagttaa tgtttgtgta agcgactttg taagtttgta aattgtaaga gaaaataatg      4080
     ttattaaaaa caagagatat cataattaaa agagtctggt atgtgacttg gacatgggtg      4140
     gttgatgtag catacgagga cgtgtgatag gtcaggaaga ccg                        4183
//
ID   Gypsy-9_DVir-LTR repbase;    DNA;    INV; 416 BP.
XX
AC   scaffold_13045;
XX
DT   10-MAR-2011 (Rel. 16.03, Created)
DT   10-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DVir_;
KW   Gypsy-9_DVir-I; Gypsy-9_DVir-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-416
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (09-MAR-2011).
XX
DR   Genome; scaffold_13045; Positions 1191346 1191761.
XX
SQ   Sequence 416 BP; 108 A; 88 C; 116 G; 104 T; 0 other;
     tgtcgcagtg tgataggtca gaaaggccgt ttcgcagtgt gattcctagt aattgtacgc        60
     gggtacattc ctcagtagca ttctgggaat tcgaggattc ggggaattcc ctgcttttgc       120
     tttactggct gatattgaac gaaagcacgg cagcaaaggc agagacgcta tgctgctgag       180
     tgaggttcgg tggtaagata ccaagagtct tgagtaagac agagatggct acatacactc       240
     gacatgagtg agtttacgac atgagtgagt ttagacatga gtgcgtaacc tgacatgggc       300
     agttgagctt gggtatttga accgatcgga actcgctgtg cagccgcgtc aatcatcaga       360
     agtatcaaca tggatgacat acctttgctc cgacagacat acccctgccg ccgaca           416
//
ID   Gypsy-9_DWil-I repbase;    DNA;    INV; 4258 BP.
XX
AC   scaffold_180702;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DWil_;
KW   Gypsy-9_DWil-LTR; Gypsy-9_DWil-I.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-4258
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180702; Positions 1663566 1667823.
XX
CC   Positions [3240-3710] - Integrase core
CC   'AATAA' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..4226
FT                 /product="Gypsy-9_DWil-I_1p"
FT                 /translation="MPIESAEFQELLSQQQQFTTNILEQQRQWMREILGNN
FT                 SSSSASNSSHAGELAMCPPFHKFDKDNQNWESYLEQLSQHFNAYSVSADEK
FT                 QKAYFLSWCGVSLYELLKNLFGSSNLNTHTYKELTDKLTVHFTTKRHIVAA
FT                 RYEFFKKEMAHGQTHKEWVADLRGIARECQFVCSAQGCLSNYVDEMIRDQI
FT                 IVHTPYDAVRTAALQKHQPTLEDVLMVAETYETTTKTVATLKDKRESQVPL
FT                 NAIHTFKKYQNKPNKEKQCKNSWKSCSGCGTSHTRERCKYRDAVCYKCGRK
FT                 GHISVVCMSKQDKSNSQTQKREEANLMEEVNTITGQVKNENRKKLIDVKIL
FT                 NQVITFQMDSGSTASVINFETYLLLNKPKLQECSRQFFAYTHIPIPILGEL
FT                 HTVAKCGEKVENIVIIVTSKRDEANLFGTDLFKKFGFDIVQICKIYEQENI
FT                 RINELCCKYKSVFEPAMGTIKDFKASVFLKSTATPKFCKSRQIPFAQLEHF
FT                 KAEANRLTEANIWKPIKFSNWASPIVLAPKPGGAIRICGDFKQAVNAQIDI
FT                 EQYPLPTKESLFHIIRHGKQFSKIDLKDAYLQMELDEATKQFMVVNTPLGL
FT                 FQYQRLPYGIASAPAIFQRYLEQLLKGIEGCGNYLDDIIISAPTSEEHLER
FT                 IEQVLNILQENGIKCKKEKCFFFKDEIEYLGRRISAAGILPDTSGLEAVRL
FT                 LKPPSNLKQLEAFMGKVNYYCNFIPNFSQLAAPLNQLRRKNVKFYFGPNQL
FT                 QAFSALKSHIINATQLAHFDENLPIVLAADASSFGLGVALSHIQHDGQERP
FT                 IVFASKTLDKHQEKYSQIEKEGLSIIFGVKRFHQYLYGRKFILLTDHKPLV
FT                 SIFNPGKHLPLMTSNRLQRWGIILMAYNFDIQYRATSAHGNADALSRLPIG
FT                 TDIEFDKEEEACNVIREINPPVNAETILKHFNNDKILKQVLHYVSVGWPEK
FT                 LESGNEDLLPYFNRKFALTVNDHLLCLQSDANRMVIPTSLRPKVLKLLHEG
FT                 HWGIVRMKQIARKHVWWPAIDEDIKKLAQSCNICKSNNPALPRQYQSWPTA
FT                 TTAWERIHIDFAGPIFDAMWLICVDAYSQFPFTVQMTSVTTANTISALSSI
FT                 FAIEGYPKTMVSDNGPQLTSEAFKEFCILHGIKHITTAPFHPASNGLAERF
FT                 VQSFKISVKKNIQEGLPVRTAVTKYLASYRFTPNAQGKSPAELIHGRSVRT
FT                 VLSQLFEKPVETKQELTKYSTNQKVFSRNFSRGEKWIEGTIDRPIGRMLYV
FT                 VRTSNGFIKRHFNQIKPRMSDNTSEHNPTKYWFVPEIPQPAPCSTPELQED
FT                 QPETHHDLPNTIQETVPDSGENAATSNETPNRIQSSRRRSGIPVRQSTRAR
FT                 QEVNRFKPHDFRKSKN"
XX
SQ   Sequence 4258 BP; 1452 A; 896 C; 826 G; 1084 T; 0 other;
     ttaatggcga cgaggcaaaa aacaaattaa aacgtttagc tacaataatt gtgtaaaatc        60
     tagttggtca gtcattgatt ctcatcaaga tgccaataga aagcgcggaa tttcaagaat       120
     tgctttccca gcaacagcaa ttcacaacga acattctaga acaacaacga caatggatga       180
     gagaaattct tggaaataat tcttcatcta gtgctagtaa ttcaagccac gcgggtgaat       240
     tagctatgtg tcctccattt cacaaatttg acaaagacaa ccaaaattgg gagtcttatc       300
     tagaacagtt atcgcaacat tttaatgcat attcggtcag tgcagacgaa aaacaaaaag       360
     catattttct ttcttggtgt ggcgtcagtt tgtacgagct tcttaaaaat ctcttcggga       420
     gtagcaactt aaacacacat acatataaag agctcacaga caaacttact gtacatttca       480
     caactaagcg tcatattgta gcagcgcgct acgaattttt taagaaagag atggcacatg       540
     gtcaaacaca caaagagtgg gtagccgatt tgcgcgggat cgctcgtgaa tgtcaatttg       600
     tgtgttctgc acaaggttgt ttgtccaact acgtagatga aatgatccgg gatcagatca       660
     tcgtacatac cccgtatgat gcagtacgga cagctgctct tcaaaagcac cagccgactc       720
     ttgaagatgt gctcatggtt gcggagacct atgagacaac gacaaaaacc gttgcaaccc       780
     ttaaagacaa gagagagagt caagttccac tcaacgcgat ccatacattc aaaaagtatc       840
     agaataaacc gaacaaagag aaacagtgca aaaactcgtg gaaatcgtgt tctgggtgtg       900
     gaacgtctca cactagagag agatgcaagt atcgtgacgc cgtatgttac aaatgtggta       960
     gaaaaggcca tatatcagtc gtgtgtatgt caaagcaaga caaaagtaat tcgcagacac      1020
     aaaaaagaga agaagcaaat ttaatggaag aagtaaacac tataacgggt caagtcaaaa      1080
     acgaaaatcg taaaaagcta attgatgtca aaatattgaa tcaagttatt acttttcaaa      1140
     tggactcagg gtcaacagct tcagtgataa attttgaaac atatttatta ctgaataaac      1200
     caaaattgca agaatgttcc agacaatttt tcgcatatac acacattcca ataccaatac      1260
     taggcgaatt gcacactgtc gcaaagtgtg gagaaaaagt cgaaaatatt gtaatcattg      1320
     ttactagtaa aagagacgaa gccaatcttt tcggaacaga tttatttaaa aaatttggat      1380
     tcgacattgt ccaaatatgt aagatttatg agcaagaaaa tattcgaatt aacgagcttt      1440
     gctgcaaata taagtcagtg ttcgagcctg ccatgggtac cataaaagat ttcaaagcca      1500
     gcgtattttt aaaatctaca gcaacaccca aattttgcaa aagccgtcaa attccatttg      1560
     ctcaattgga acatttcaaa gccgaagcaa atcgtctcac ggaagccaat atctggaaac      1620
     cgatcaaatt tagcaactgg gcatccccca ttgtgttagc acctaagcca ggtggagcca      1680
     ttcggatttg tggtgacttt aagcaagcag ttaacgcaca aatcgacata gagcagtatc      1740
     cattaccaac aaaagagtcc ctattccaca taattcgtca tggtaagcaa ttcagcaaaa      1800
     tagacctaaa agacgcctat cttcagatgg aactagatga ggcaacaaag caattcatgg      1860
     tcgtcaacac gccattgggc ctatttcaat atcagcgcct tccgtatgga attgccagcg      1920
     caccggcaat cttccagaga tatcttgagc aacttctaaa gggaatagaa ggttgtggca      1980
     actacctaga tgacatcatc atctcagctc caacaagcga ggagcatctg gagcgaatcg      2040
     agcaagtttt aaacatactt caagaaaacg gaatcaaatg caaaaaggaa aagtgcttct      2100
     ttttcaaaga cgaaatcgaa tacttgggaa gacggattag tgctgctgga attttgccag      2160
     acacatccgg attagaagct gtacgtctat taaaaccgcc ctcaaattta aagcaattgg      2220
     aagcatttat gggtaaagta aattactatt gcaactttat accaaacttt tcacagttgg      2280
     cagcaccttt aaaccaactt cgtagaaaaa atgtaaaatt ttattttggt ccgaatcaac      2340
     tacaagcctt ttcagctctg aagtctcaca ttattaacgc aacgcaactg gcgcattttg      2400
     atgaaaattt accgatcgtg ctcgcagcag acgcatcatc atttggtctc ggagtagccc      2460
     tttctcatat tcaacacgat ggtcaagaga gacccattgt ttttgcttcg aagacactcg      2520
     acaaacatca agagaaatac agtcaaatag aaaaagaggg attgtcaatc attttcggag      2580
     ttaaacgatt tcaccaatat ctgtatggga ggaagttcat actgttaacc gatcacaagc      2640
     cgcttgtatc gatcttcaat ccagggaaac atcttccatt gatgacttca aacagactac      2700
     aacgttgggg tatcattcta atggcgtata attttgatat ccagtatcgg gcgacatctg      2760
     cacatggcaa tgccgatgct ctttcccgac taccaattgg aactgatata gaattcgata      2820
     aagaggagga agcttgcaac gtaataaggg aaatcaatcc accggttaat gcagaaacca      2880
     ttctcaagca tttcaataac gataaaatcc tcaaacaagt cctgcactat gtttctgtag      2940
     gatggccaga aaagttagaa agtggcaacg aagatttatt gccatacttt aatcgtaagt      3000
     ttgctttaac agttaatgat cacttactat gtttacagtc agatgcaaat cgtatggtga      3060
     ttccaaccag tctacgtcca aaagtcctta aactattaca tgagggacat tggggcattg      3120
     ttcgcatgaa gcaaattgca aggaaacatg tttggtggcc tgccattgat gaagacataa      3180
     aaaagctagc tcagtcatgc aacatctgca agagcaacaa tccagcgcta ccacgacaat      3240
     accaaagttg gcctacagca accacagctt gggagcgaat ccacatcgac ttcgctggcc      3300
     caatattcga tgccatgtgg ttaatttgtg tagacgcata ctcgcagttc ccgtttactg      3360
     ttcaaatgac atcggtaaca accgccaaca caatctcagc tttgtcttca atttttgcaa      3420
     tcgaaggata tcctaagact atggtcagcg ataatggacc gcagcttacg tctgaagcat      3480
     tcaaagagtt ttgcatactc catggaatca agcatataac aacagcacca tttcacccag      3540
     cctctaatgg attggctgag cgatttgtac aatcttttaa aatttctgtg aagaaaaata      3600
     ttcaggaagg tttgcctgta cgaacagcag taacgaaata tcttgcttct tacagattca      3660
     ccccaaatgc acaaggtaaa tctcctgctg agttaattca cggtcgttca gttcgcaccg      3720
     tattaagtca acttttcgaa aagcctgtcg aaactaagca agagctgaca aaatacagca      3780
     caaatcaaaa ggtattttcc agaaatttct cgaggggaga aaagtggatc gaaggcacta      3840
     tcgatcgacc aattggacga atgctgtacg tcgtacgtac atcaaatggc tttatcaagc      3900
     gccatttcaa ccaaatcaaa ccacgcatgt cagacaacac gtccgagcac aacccgacta      3960
     agtattggtt cgttcctgaa ataccacaac cagctccttg ttcaacacca gaattacaag      4020
     aagaccagcc agaaacgcac cacgatcttc cgaataccat tcaagaaact gttcctgatt      4080
     ctggtgaaaa tgcagcaacg tcgaatgaaa ctccaaatcg aatccaatct tcgcgacgac      4140
     gttctggtat acctgttcga caaagtacaa gagctcgtca ggaagtcaat cggttcaagc      4200
     cacacgattt ccgaaaatct aagaattaat tgccgtttat aatttaaagg gggagatg        4258
//
ID   Gypsy-9_DWil-LTR repbase;    DNA;    INV; 158 BP.
XX
AC   scaffold_180702;
XX
DT   05-MAR-2011 (Rel. 16.03, Created)
DT   05-MAR-2011 (Rel. 16.03, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_DWil_;
KW   Gypsy-9_DWil-I; Gypsy-9_DWil-LTR.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-158
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Direct Submission to RU (05-MAR-2011).
XX
DR   Genome; scaffold_180702; Positions 1663408 1663565.
XX
SQ   Sequence 158 BP; 58 A; 33 C; 21 G; 46 T; 0 other;
     tgttatgtat catttaaaat ctaaaataag catttcccaa cattgtaaaa cctagtattc        60
     cttagatatg gtaacattgt cataaaacat caataaacgg tcagtctagc ataagctctc       120
     aagaagaaca cgcgtacctc tcttctgtgg acacaaca                               158
//
ID   Gypsy-9_HeAr-I repbase;    DNA;    INV; 5855 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_HeAr-I.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-5855
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5559-5559 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           924..2312
FT                 /product="Gypsy-9_HeAr-I_1p"
FT                 /note="gag."
FT                 /translation="MAYPVKFMSLQKAELEYEVSIRGESPATTVQELRKQI
FT                 AKCGPLFPSEDILTSPFDSAVDLKGVLDVLERVNNNLESTSIDKNTLLRSQ
FT                 NLLNHVYHRLNRIAFDDKLEETYDQCVGLFKSTSAKLNSLNDSAVDPLATT
FT                 STDCSSVLTATPVNVSVTCEGNINKFSKIRYDGKSCVRAFIQRCEELCQAK
FT                 NISYNKILSNATEIFIGEALHWYRSVRDTISSWNDLTLALRRDFDESDYDY
FT                 RLLTEIRTRTQGETENIVIYLSIMSGLFSRLSKKVSEEDKLEIILHNIRPI
FT                 YANILASVSEINSIDELRTLCRNYENIQSRFSQFKEPPKPSSNTLAPELAY
FT                 SGQSSSKHYSKFNNNNTYGKNFHNNNRQNNNQNIYNNNKGNNNSTAKYVHA
FT                 VGTPNPNSNPNPKHNTSSKMRYCPRCRNNTHNLRQCTSKDVVVCFSCGREG
FT                 VKAPDCPNCSKDVNKEKN"
FT   CDS           2303..5494
FT                 /product="Gypsy-9_HeAr-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="GKKLITENRANNKFDNQEWQDWLQTIRLFFKSYNIYT
FT                 VLEDKGDCDDRPYVSVLINDLTVSGLLDSGSAVTIIGNSAHNILKDYGLPL
FT                 IENDCITVTAAGGQNLNSLGYINLPIKFENQFHILKAHVIPDIKRNLILGI
FT                 DFWRKFKICPKYTGSVTMFNDINCSLDTPQHSFIQGYTNLDEPQKKLADSV
FT                 IKQFEDISFHRKGLGVTSLIQHRIETGNAAPIRQRYYRLSPEKQRILIEQV
FT                 DEMLSLDVIEPCESAWSSPVLIVNKKNGQPRFCLDSRKLNSVTKRDAYNLP
FT                 YISEILDNLRDARYLSSLDLSKAFWQIPIAAEDREKTAFYVPGRGTFCFKR
FT                 TAFGLTNAPATQQRLVDLLFSEFGLKVFAYLDDVIIISEDFNSHMTLLLRV
FT                 LDKLKQANLTVNLEKCNFFRSQLKYLGYVVDSTGLRTDPAKVEAILNYPTP
FT                 KSRKDLKRFLGTATWYRRFVPNFSTIAGPLNKLTSSKKGTPPFKWTPEADS
FT                 AFQKLKECLVSAPVLSCPDYSKPFEVHTDASSYGVGAMLTQSIDGKEHPIA
FT                 YMSKSLTAAEKNYSITERETLAVITALEHWRCYIENGQQFTVYTDHSALKW
FT                 FLSLSNPTGRLARWGVRLSAFNFVIKHRRGVDNVIPDALSRSVPVSAIGSS
FT                 TYVDTKDPWYKSIYHGCLNDPSKFANFIIKNNKLFRLSKNKHEMTSEFSWK
FT                 EVVPTEFREPIIHENHSEPKAGHMGIFKTYRRLALRYYWPGMYKDVVKFVS
FT                 TCDKCLAYKAQNHQHLGEMGRPKQCSRPFQMISIDLMGPLPTTRKQNNYIL
FT                 VITCCFSKFCLIFPIKKATAVIITKILEESVFLVHGIPQTVLMDNGTQFTG
FT                 KVTDALFQKYRIPNIYFTPKYTPQVNLVERYNRTIITCLSTYVNDDHRSWD
FT                 LFIPEVQFAINNSVNEATGFTPSFLVFGRELVSCGSHYIDNDLGNEILFLP
FT                 RDIYAENLGCLASTFDTVQSRLWQAHVKNTSHYNLRRKFAEFNVGDVVMKR
FT                 AYFLSDKANRFSKKLAPKFIKAKIIEKKSPLVYVLQDMSGKNLGSWHIKDL
FT                 KLFVCNR"
XX
SQ   Sequence 5855 BP; 1729 A; 1082 C; 1079 G; 1964 T; 1 other;
     ttggcgccct tttcgtggtt tatatatggt cagtaatttt ttttgttcta tggaggtagt        60
     agtgcttttt ggtgttttgt gtgcgttctt tatgtttttt agttttgtga aacgtttttt       120
     ttcttttggt tgcatagtaa ctaaggtgta cgtcacattt gttttgtaat atttaacatt       180
     ttaaatatta atcaatgatt gatattatca aagtgcagtc acagtcctaa acttgacaca       240
     cactagtaca atttgccgtt aattttgttt tttcaaattt tttttttagc cgtcattata       300
     gttattgtaa attacccact gtttcttaaa taaaattttg cttcgtagaa tgtcttgcat       360
     aaagtactat caacggcata atttggtgga cacttaattt tttttttaat tttttttttt       420
     tggtactaca gttaatttta ttacatctgc agtacagtcg acagtgtaaa ttaatatttc       480
     gttattgttt tatttttttt atatagtttt ttttacacat tatttttttt tatataaacg       540
     gtacaatcat taatgtatgt attgcaaatt acaattacgg tcggcaacat tatttgtcgc       600
     ttatattaaa aaaaaatttg tttgtgtatt taatgtgcgt acacattagt tacgaaattt       660
     gctttgtttt tttatttttt tgttgcaatt tttttttttt ttggttgcaa tttttttttt       720
     ttgtttttgt ctcacgctta ttttcattaa cattcttctc cgtggaaaaa caaccaagac       780
     gttacttagt taaatttaaa aattgtaaca gacggagtat tttttttttt aatttctaat       840
     tgttttttca cgttattgag ttgttcaaca ttcacccaat cacttttcgc atattttttt       900
     ttttttctta ttcaatcttc gctatggctt atccagttaa gtttatgtcg cttcaaaagg       960
     ctgagcttga gtacgaagtc tctattaggg gtgaatctcc agctactaca gtgcaggagt      1020
     tgcgcaaaca aattgctaag tgtggaccat tgtttccttc ggaagacatc ctcactagtc      1080
     cgttcgattc agcagttgac cttaaaggag ttttggatgt tcttgaaagg gttaacaata      1140
     atttagaatc tacttcaata gataaaaaca cattgttacg gagtcaaaat ttacttaacc      1200
     atgtttatca ccgtcttaat cgtattgcat ttgatgacaa attagaggag acttacgacc      1260
     aatgtgttgg ccttttcaag agcacttctg caaagcttaa ttcgcttaat gattctgctg      1320
     tggaccctct agctaccact agtacggact gctcatccgt tcttactgcg acacctgtta      1380
     atgtttccgt cacttgtgaa ggcaacatta acaaattttc gaagataaga tatgatggca      1440
     agtcttgcgt gcgtgcattt attcaacgtt gtgaagaatt gtgtcaggct aaaaatattt      1500
     cttataataa aatattatct aacgctacag agatatttat cggcgaagca ttgcattggt      1560
     acagaagtgt cagggatacg atttcgagtt ggaacgatct tacactggcg ttgagacgtg      1620
     atttcgatga gtctgattat gactacagac tgcttacaga gatacggact cgtacacagg      1680
     gtgagactga aaatatcgtc atttacttat ctattatgtc tggactcttt tcgcgacttt      1740
     caaagaaggt gtcagaggaa gataaattgg agataatcct tcacaatatt cgtccaatct      1800
     acgcgaatat ccttgcttct gtttcggaaa taaattctat tgacgaattg cgaaccttgt      1860
     gtcgaaatta tgaaaatatc cagtcacgat tttctcaatt taaggaaccc cctaaaccgt      1920
     cctcgaatac cttagctcct gagttagcat attcaggaca atctagtagt aaacattatt      1980
     ctaaatttaa taataataac acatatggta aaaattttca caataacaat aggcaaaata      2040
     ataatcaaaa tatttataat aataacaaag gtaataataa ttctacagct aaatatgttc      2100
     atgcagtcgg tactcctaat cctaattcta accctaatcc taaacataat actagttcta      2160
     aaatgcgcta ctgcccacgt tgtcgtaata acacacataa tctaaggcag tgtacaagca      2220
     aggatgtggt agtatgtttt tcttgtggtc gtgagggcgt gaaagctcct gattgtccaa      2280
     actgcagcaa ggatgttaat aaggaaaaaa actaattaca gagaaccgtg caaataataa      2340
     atttgataac caagagtggc aggattggtt acaaacaatt aggttatttt ttaaatcgta      2400
     taacatctac acggttctcg aggataaagg agactgtgat gataggcctt atgtatctgt      2460
     tctgattaac gatcttaccg tctcgggtct tctagattcc ggttccgcgg taaccattat      2520
     aggcaacagt gctcataaca tacttaaaga ttatggcttg ccacttattg aaaacgattg      2580
     cattacagta acggcagcag gaggtcaaaa tttaaatagt ttaggttata ttaatttacc      2640
     aataaaattc gagaatcaat ttcacatttt gaaggcacat gtcattcccg atattaaaag      2700
     gaacctgatt ttaggcatag atttttggcg taaatttaag atatgtccaa aatatactgg      2760
     tagcgttaca atgtttaatg acattaattg ctcattagat actcctcaac attctttcat      2820
     acaaggttat actaatcttg atgagccaca aaagaaactg gcggatagtg ttatcaaaca      2880
     gttcgaagac atttcttttc atcgcaaagg tttgggcgta acgagtctta tccagcaccg      2940
     cattgagacg ggtaacgcag caccgattcg tcaacggtac taccgactgt caccggagaa      3000
     gcagcgtatt ttgattgaac aggtggatga aatgctttca ctcgacgtaa tcgagccttg      3060
     cgagagcgca tggtcatctc ctgttctgat cgttaataaa aagaacggcc agcctcggtt      3120
     ttgccttgat agtcgcaaac ttaattcggt gactaagcgc gatgcctata atctccctta      3180
     catatcggag attttagaca atttacgaga cgcgcgctat ttatcaagtt tagacctatc      3240
     caaggctttc tggcaaatac ctatcgctgc tgaagaccgt gagaagacag cgttttacgt      3300
     tcctggcagg ggcacctttt gtttcaagcg tactgctttt ggcttgacaa atgcaccggc      3360
     tactcagcag agactcgttg accttttgtt ttccgagttt ggcctaaaag tcttcgctta      3420
     tttggatgac gtcatcatca tttctgagga cttcaatagt cacatgacac tacttttgcg      3480
     cgttttagac aagttaaaac aggctaactt aactgttaac ctcgaaaagt gcaatttctt      3540
     caggtcacag ctcaaatacc tcggttacgt ggtcgatagc actgggctac gtacagatcc      3600
     agccaaggtt gaggctatac tcaattatcc gacgcctaaa agtcggaagg acctcaaacg      3660
     ttttctcggt actgccactt ggtacagacg tttcgttccg aacttcagca ctatagcggg      3720
     gcccttaaat aagttgactt cctccaaaaa gggcactccc cccttcaaat ggactccaga      3780
     agctgactct gcattccaaa aacttaagga gtgtttagtt tctgcccccg tactttcatg      3840
     tccagattac tctaagccgt ttgaagtaca tacggatgct agtagttacg gtgtcggcgc      3900
     aatgcttact cagtcaatag atggcaagga acatccaatt gcctacatga gtaagtcatt      3960
     gactgctgcc gagaagaact acagcataac cgagcgcgaa acgttagctg tcattaccgc      4020
     tcttgagcat tggcgttgct atattgaaaa cggacaacag tttactgtct ataccgacca      4080
     cagcgcgctc aaatggttct tgtcgttaag taaccctact ggtcgactgg cacgatgggg      4140
     cgtacgttta tcagccttca acttcgttat taagcaccga cgtggcgtag acaacgtcat      4200
     tcccgacgct ttgtctagga gcgtaccagt tagtgccatt ggttcttcca cttatgtgga      4260
     cactaaagac ccttggtaca aaagtattta ccacggttgc ctaaatgacc cttcaaaatt      4320
     tgcaaacttt attattaaaa ataataaact gttccggctt tctaaaaata agcatgaaat      4380
     gacttctgaa ttctcgtgga aggaggtcgt tcctactgaa tttcgcgagc ccataattca      4440
     cgaaaatcat tccgagccta aagcaggaca tatgggcatt tttaaaactt accgccgtct      4500
     tgcgttacgt tattactggc cagggatgta taaagacgtt gttaaatttg ttagtacttg      4560
     tgataagtgc ttagcctaca aagcccagaa tcatcagcat ttaggagaaa tgggtcgtcc      4620
     taaacaatgt tcacgaccat ttcaaatgat ctctatagat ctaatgggac ctcttcctac      4680
     tacaagaaag cagaataact acatattagt tataacttgt tgtttttcaa aattttgttt      4740
     gattttccca attaaaaaag caactgccgt aataataaca aaaattttag aagagtcagt      4800
     atttttagtg cacggcatac ctcaaaccgt attaatggat aatggtacac agtttactgg      4860
     gaaggtgacc gatgcattat ttcaaaaata tagaataccg aacatttact tcacacctaa      4920
     atacacccct caggtaaatt tagtagaaag gtataataga actattataa cttgtttatc      4980
     cacatacgta aatgatgacc acagatcatg ggacttattt attcccgaag tacagtttgc      5040
     catcaacaac tcggtaaacg aagccacagg ttttacgcca tcatttttag ttttcggtcg      5100
     tgaacttgtt tcttgcgggt ctcactatat tgataatgac ctcggcaatg aaatactctt      5160
     tttgccacgt gatatatacg cagaaaacct tggttgtttg gcaagtacct ttgatactgt      5220
     gcagtccaga ttatggcaag cccatgtaaa gaatacttca cattataatt tgagacgcaa      5280
     gtttgccgaa tttaacgttg gagacgtagt tatgaagcgc gcttactttt taagtgataa      5340
     ggcaaatcgg ttttcgaaaa agttagcacc gaaatttatt aaagctaaaa taattgaaaa      5400
     gaagtctccc ttagtttatg tgctgcagga catgtcaggt aaaaacttag gatcttggca      5460
     cataaaagac ttaaaattat ttgtctgcaa tagataatat cttttttttg ttcatcaatt      5520
     ttaactattc agtatttttt ctcttcaagt tatcttttat cttaatttwt ttactatttt      5580
     agttccctct cgcttacttt tccaccttca cttggaactt ctatttgtaa agtgtcaagt      5640
     aaataagaat actggcactt ataacagtat gcaattgtgc gtcagttatt ttaatagata      5700
     ctaagagtaa ctgctgctgg agtgtgtttg agagatgtat gaatgagtgt attttggaag      5760
     aataaacaaa tagtttagca acatagttcg agaacatgcg gattttgtca tttttttaga      5820
     gaaataacaa aatccttgac tgtgcgcggg ggtat                                 5855
//
ID   Gypsy-9_HeAr-LTR repbase;    DNA;    INV; 1344 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 26.10, Created)
DT   14-JUN-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   LTR retrotransposon from the cotton bollworm genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_HeAr-LTR.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-1344
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cotton bollworm genome.";
RL   Repbase Reports 21(10), 5547-5547 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1344 BP; 361 A; 287 C; 246 G; 448 T; 2 other;
     tgtaacgttg tacgttaatg tcaacgtttt aaaatacttg ccttttgttt ttaatcaaaa        60
     atattaatac aaggtgggta gaaaaataaa taawgtgtaa tgtctaccta cggttgcgtt       120
     tagaaacgcg tacaattatt tgtttcgtta attaagtatt atttatttct tttactaaac       180
     tgattaacgt attttcaaat tcatatttat tataacaact tgggtctaga aataaaaatt       240
     gtaacttagt taaaacttaa aaaaacaaac agtacgtagt cattatctgt atcggtgcaa       300
     cggcacgttg agccaaattc gacttcacgt cattgtgata tggtttcgat tcttttacct       360
     ggactgctgt accaatgcaa atcggattcg ttcgctactc attcacgggc gcgtaccgtg       420
     agtttggtta gctgctttag cgactcgacc atttttaaaa tatcatcacg gaagacacac       480
     gttcacgcgc tccttataag tactcacttt tgccagtcct tagtgcgtga cgttaatcgt       540
     ggtcttaacg gttttatttt ataattttga aaacatattt tttcaaactt cgtttaactt       600
     attctctgta ttgtagaatc agtgcatctc cccgtattgg gtaagtgttg aacaattcgt       660
     gtaattgcta ccacccacct attgggtgac cgttggcaaa tgacttgcag atttcatctt       720
     ttcttgcttt gcacattgtc gcatcatttg tagccttttt tcatcatcat aagcagtcag       780
     ggttattctt ttcatttgct tatccctgca tcttattttt twtatgtttt atacatttta       840
     tataaaaatt acatttcagc tgttctctgt aaactccgat tctgactgtg aatttgcaca       900
     cattcgcctt aagcgcactg agcttctgct tcctgcttcc gcggcaaaca cagtcagagg       960
     aggacaatca gaaatggaca tttatttgaa tggacgtaaa ttccagggtc caaagttcgg      1020
     gttcaaagtt cggcttaaac tccgggccac ggctgatccg ttggccgaac gtcgacaggc      1080
     accgagaggc accgtgcacc gattaccctc taccatactg catcaccatc tgcgggtcgt      1140
     ccaccctgaa gcgcctcctc ggctgagcgt catcaacgga cttctctcca cgtgaagcca      1200
     ggacagtgct agcgcgcttt acctccatat aacaaaatta attttgctga cgggcattcg      1260
     aatcgcgacc ttggaaataa atttttatgt tcacaatgtg gggtttaatt taaaatctaa      1320
     accgtccaca cgctaaacgt gaca                                             1344
//
ID   Gypsy-9_HMM-I repbase;    DNA;    INV; 4075 BP.
XX
AC   CAEZ01008408;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_HMM_;
KW   Gypsy-9_HMM-LTR; Gypsy-9_HMM-I.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4075
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01008408; Positions   19106   15032.
XX
CC   Positions [1404-1940] - Reverse transcriptase
CC   Positions [2982-3488] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(864..2330,2334..3533)
FT                 /product="Gypsy-9_HMM-I_1p"
FT                 /translation="MQSATRVPPYEVDIFIADVPVRMQVDTGASFSLINER
FT                 TWSVLCSHLPRNTLEQIQLSLRTWNETPVKLLGQATLPVRYKNVLRDLTMI
FT                 VAKGNGPNLLGRNWLAPLDITMNINFIASDDLAQLQKVITRHTEVFRDGLG
FT                 TYNGNPVAIHVKSGANPRFLKARPVPYALRERVENEIDRLEHEGVLCPVSF
FT                 SEWATPVVPIVKKSGEIRLCGDYRSTVNEATESDTYPMPTANEVFATVAGG
FT                 NFFTTLDLDRAYTQVVVDDNTSKLLTLNTCKGLYTVHRLAFGVKACPGIFQ
FT                 RLMTSLLAGIPSVAVLIDDIIISGRSMLEMLESLDMVLGKIEKAGLRLNKM
FT                 KCKFAQKKVEFLGFVIDSEGIHPAPSKVESIVKTPAPKNKKELQAFLGLYN
FT                 FYERFVPHKATVLEPLHRLLDAKSSWKWSKVEQSAFETAKSLLTFDVTLVH
FT                 YDVNKPLILTCDSSEYGVGAVLSHEMEDMEERPIAMASRTLHSHTIMFGIT
FT                 KFNNYLMARRFRIVTDHKPLLGIFDPKKPMPTMLSSRLTRIAIALTAHNYE
FT                 IVYKPGSQIGYADSLSRWPQPEAFLAKAPADFPFDAERVALATKQDKTLCQ
FT                 VMHYIKHGWPTKINDKCLRPFWLHKVELSLQNDCILLGCRVFIPSALRQHV
FT                 LQVLHKAHSGIVQTKSVARSYVWWPGLNEDIELMIGSCSKCLENRHMPPKV
FT                 VHEWITPTRPWSRIHIDWAGPYKNKYFLIMVDAYSRWPEVFVVNNTTSATA
FT                 ISLLRSVFATHGLCEVLVSDNGTSFTSNDMQNFLKANNIRHVTTAPYHPAT
FT                 NGLAERMVQTIKGKLNKMDNLSWAVKIPNLLLALRSTPCVTTNKSPSELLM
FT                 KRRLRTLLDTLHPDNLRNTKNEQEIYNNNQKKPPSN"
XX
SQ   Sequence 4075 BP; 1333 A; 723 C; 901 G; 1118 T; 0 other;
     tatataatat tggcgacgag aagttaaaaa ttatacaaaa tggataaaaa agctataaga        60
     tttgaagaat acaatccaga ctcggctaac tgggacagtt acatagaccg attgaagttt       120
     tgtttcgagg caaatggcgt catcgtggac aatgttaagc gtgctaattt tttcacagtg       180
     tgtggttcgc gagtgtatga cactttggtt gcgttgatta cgcctcgaaa agcaaccgat       240
     gtgactttta ccgaaacaga agcaattcta agtaggcatt acagtcctac tccaaatgaa       300
     attacaatgt catataagtt ttataaacgg gaacaaaaac gcggtgaatt agcttcagac       360
     tttattgcag atgtgagaaa acttagtgcc aagtgtaatt ttacagactt agaaagaatg       420
     ttacgcgaca aactcgtgtg tggtatgagt gacagtagat tacaatacga actattaaaa       480
     cgcgacaatt tacactatca ggacgtagtg agtgcaatgt tagcatcgga aagtgcagat       540
     cgtgatgtgc gcatgataca cggtaccgcg ggcatcaaca gcggcgccgt cgcggacgtg       600
     agggcgcgcg ccgggacatc gcaagacgac gccggcgagc cgatggacgt taacgccgac       660
     aaacaacagt gtctaatcgg ttgtgttacc gatgtgggag ccgacacgcg ggagaatgtc       720
     gttttgtcaa cgcaatttgc cgattttgta agaagcgagg gcacgttgaa aaaatttgta       780
     ttaaaaagaa aaagtctaac cagaaggacg ttaatttcac acagattgaa gataatggag       840
     atctattaaa tggcatttac aatatgcaga gtgctacgcg ggtgccacct tacgaagttg       900
     atatttttat tgctgacgtg cccgtgcgga tgcaagtcga tacgggggct agtttctctc       960
     tcatcaacga gcgcacatgg agtgtgctct gcagtcactt gccgcggaac acattagagc      1020
     agatccagtt atcattgcgt acatggaatg aaacacctgt aaaattgctt gggcaggcaa      1080
     cattgccagt gcgatataag aatgtcttaa gagatttgac tatgatagta gctaaaggga      1140
     acggtccaaa tctacttggt cgcaattggc tcgcgcctct agatatcaca atgaacatta      1200
     atttcattgc tagcgatgat ctggcgcaat tgcagaaggt aataacaagg catacggagg      1260
     tatttagaga tggccttggt acgtacaatg gtaatcccgt tgctatacat gtgaaatctg      1320
     gtgcaaatcc tcggttttta aaagctcgcc ctgtaccata tgcccttagg gaacgggttg      1380
     aaaacgagat agacagatta gaacacgaag gagttttgtg ccccgtgtca ttttcagaat      1440
     gggctacacc tgtggtacct atagtaaaaa agtctggtga aataagacta tgcggagatt      1500
     accggagtac agtgaatgag gcgacggaat cagatacata cccgatgcca acggctaatg      1560
     aagtttttgc cacagttgct ggtggaaatt tttttacaac attagaccta gacagagcat      1620
     atacccaagt ggttgtggac gataacactt caaaactact tactttaaat acttgtaaag      1680
     gcctatacac tgtacatagg ttagcatttg gcgttaaagc ttgtccagga atattccagc      1740
     gcttaatgac ctcgttatta gcgggcattc caagtgttgc agtattgatc gacgacataa      1800
     taattagtgg ccggtcgatg ttggaaatgc tggaaagctt agacatggta ctcggaaaaa      1860
     tagaaaaagc aggactgcgc ttaaacaaaa tgaaatgtaa atttgctcag aagaaggttg      1920
     aatttcttgg ttttgtcata gattcagaag gtatacaccc agcacctagt aaggtggagt      1980
     ctattgtgaa gactcctgca ccgaaaaaca agaaagagtt gcaagcattt cttggcctat      2040
     acaattttta tgagcgattt gttccacaca aagctacggt attagagcct ttacatcgtt      2100
     tattggacgc gaaaagtagt tggaaatggt caaaagtaga gcagagtgca ttcgaaacag      2160
     ctaaaagttt acttaccttc gatgtaacct tggtacatta tgatgttaat aaaccattaa      2220
     tactcacctg tgacagttca gagtatggag ttggggcagt attatctcat gaaatggagg      2280
     atatggaaga acgtccaata gcaatggcat ctagaactct tcattcacac taaactatta      2340
     tgttcggtat aacaaaattt aataattacc tgatggcaag gcgtttccgt atagttacgg      2400
     accataaacc tctacttggc attttcgatc ctaaaaaacc tatgccaact atgctctcgt      2460
     ctcgactaac tagaattgct attgcattga ctgcacataa ttatgaaata gtatacaaac      2520
     ctggatctca aattggatat gccgacagtc ttagtagatg gcctcagcct gaagcctttc      2580
     tggctaaagc accagctgat tttccttttg atgccgaacg cgttgcttta gcaacaaaac      2640
     aagacaaaac tttatgtcaa gtgatgcact atataaagca tgggtggcca acaaaaatta      2700
     atgacaaatg tctccgtcca ttttggttac ataaagttga actatcacta caaaatgatt      2760
     gcatacttct cggttgtcgt gtatttatac cgagtgcact tagacaacat gtattacaag      2820
     ttctacataa agcacattca ggaatagttc aaacaaagtc agttgctcgg agttacgtgt      2880
     ggtggccagg tctcaatgaa gatattgaat taatgattgg aagttgttcg aaatgcttag      2940
     aaaatcgaca tatgcctcct aaggtagtgc atgagtggat tacgcccaca agaccctggt      3000
     caaggatcca cattgattgg gccggaccat ataagaataa atatttcttg atcatggtgg      3060
     atgcatactc cagatggcct gaagtgtttg tggtaaataa taccacgtct gcaacagcca      3120
     ttagcttatt aagatcagta tttgcaaccc atggtttgtg tgaagtgtta gtatcagaca      3180
     atggcacttc ttttacatca aatgatatgc agaatttttt gaaggccaat aatattaggc      3240
     atgtaacgac agcaccttac cacccagcta ctaatggttt ggctgagcgc atggttcaaa      3300
     cgataaaagg aaaactcaat aaaatggata acttatcgtg ggctgttaaa attcctaatt      3360
     tgttactagc tcttaggagt acaccatgcg taacaactaa taaaagtcca tcagaattac      3420
     taatgaagag gcgtctgcgt actctattag atactttgca tccagataat ttgagaaata      3480
     caaaaaatga acaggaaatt tataataata atcaaaagaa acccccgtca aactaatgta      3540
     aatcagaaag taatgtaata ggaaattaca accaaaactg gtccaaggtg gcttcctggg      3600
     gtaattaatg aaaagtcagg tccatctaat tataaagtga agacgagtga ggggacgatt      3660
     attaatagac atattgacca gttaattaaa attgctccag cagcaactca aactgagaga      3720
     gaggtaaatg ataatcgtga acatttatca ccaaatataa ctactgagaa tatagatgta      3780
     gatatggata aagatatgga tgatatcaat ggtaacaaag aggacgagaa tagtcaggta      3840
     gaggaagaaa tcattgctat accagatgcc acagaatggg ctgaaatgtt aggaattcct      3900
     agtacttctg atagcacagg aaaaataaaa tataagttta gtgtacgtgc aaagtcacct      3960
     tatcagaggc cgcaagtagt tgagaatgct cattgtttaa attgattgtt attattgtat      4020
     atgttatttt gtgttgattt ttaaattatt gtaaagctat cttattgggg aggta           4075
//
ID   Gypsy-9_HMM-LTR repbase;    DNA;    INV; 181 BP.
XX
AC   CAEZ01008408;
XX
DT   31-MAR-2012 (Rel. 17.08, Created)
DT   31-MAR-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_HMM_;
KW   Gypsy-9_HMM-I; Gypsy-9_HMM-LTR.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-181
RA   Jurka J.;
RT   "LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Direct Submission to RU (30-MAR-2012).
XX
DR   Genome; CAEZ01008408; Positions   15031   14851.
XX
SQ   Sequence 181 BP; 63 A; 19 C; 30 G; 69 T; 0 other;
     tgtcatatat aaagtcaaag tttgttatat agatttaaat gtaggtactt atttgctttg        60
     ttaaataata aagggaattt aagtgggtaa gttgaaatta tatatgacaa gttagttcgt       120
     gtcaggctac ctagccaata caatacttat tcaatgaact cagtatttta tttacgttac       180
     a                                                                       181
//
ID   Gypsy-9_LH-I repbase;    DNA;    INV; 4951 BP.
XX
AC   ADOQ01003471;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_LH_;
KW   Gypsy-9_LH-LTR; Gypsy-9_LH-I.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4951
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003471; Positions   17211   22161.
XX
CC   Positions [3675-4148] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           237..4550
FT                 /product="Gypsy-9_LH-I_1p"
FT                 /translation="MDRASLENMSPEELRQQVTRYRLTPNAETREAYTEAL
FT                 VQHFERFCAALEEGPDPGSQPIETLPSANPRPARIGSTSASASEAQGSTQP
FT                 PWDALARCLTSLTSQMQRQESLLERVVRQLNHSPAGPANLESSTAPPSSES
FT                 GALSPRPSSVGTANLGHAVSILATQIPEFGGAVTENPQVWLTRVDQVARVH
FT                 NVPDDVKLLAASSKLTKVARKWYDLSTGSILESWTAFSQALTSRFKRTAPY
FT                 HVTLQRIEARKWNTTKEAFQEYAMDHIALMHGMQLPMQEKIQLLLSGINSP
FT                 AVRATAAAMDVHSMDEFLDRMERVVDANPDQERKSASTKNFKTETSSGGEK
FT                 AANSAKQKPYCVYCKKPGHFRKDCLKIKKRETQTSATPTSAVAAVQQDTEN
FT                 TVAMVQHHCKQITFGHDPIIISRINNVKSDVTALIDTGSPVSFARADLLSG
FT                 GYGLRIQEVNQAPALTAINNSLIKITGAINTEIVFAQHPERTFNISLFVLN
FT                 SRSLATQIIIGRDFLNNHSLFAIYRPSWSNAQSSDADISSTFPEELLKVHA
FT                 CYEPHRADEYLKELAKEMDPVEGIKLINLFEEIAELKVSRVEDDYCVRVNI
FT                 KDTSTYAYAPRKFAYSERIQLRKITDDLIARGIIKTSVSPYCARIVPVKKK
FT                 NGELRLCVDLRPLNARIAKQKYPFPVIEDCISRLGDKSIFTLLDMKDGFYQ
FT                 ISVHPSDTKYFSFATPDGQFEYTKLPFGFADSPAEFQTRIVQILQLLIRTN
FT                 KLIVYIDDILIATDTVDSNLQVLKQTLIEFKKYGFELNIKKCQFLKRKIEY
FT                 LGYIIARNSITISDRHTELISKFPQPKTVLQLQRFLGLTNYFRRFIKSYSL
FT                 IAKPLYNLLKKDSKFVFSPECRKAYDALKRFLTSYPILAIYNPAKETQLHT
FT                 DASAHGLGAILLQKQEEGQWSPIAYYSQTTNQAESRYHSFELEMLAIVRAV
FT                 ERFHIYLYGITFTIVTDCNALVYAVSKANLNPRIARWTLALQNYSFKITHR
FT                 PGSRMAHVDALSRQTMYVSTLPLERILEFQQLQDPTLKQIALDLEYRDNKK
FT                 FKLIEGLVYRKGDDRDRFAVLESMVNAILKTYHDELAHCGYEKTVQGIQQT
FT                 YWFPALRKRVRDYIYNCIVCLSADASTHRLEGELQIEEAPNEPFTIVHVDH
FT                 FGPLQATADGYKHVLITIDAFTRFTSLFPVKSTSSKEVCIHLSTLFNFFGI
FT                 PEEVVTDRGSAFTSAEFSNFLAERKIKLRKVAVASPWVNGKVERVNRFIKS
FT                 SLAKLVKSPDEWKEKLQTLQYVINNTFHTALRCSPSKILFGFDQRGHIDKQ
FT                 LRNELEKQANDSLSFDQQRDNTREVAVRTNERLKEYNKLYYDRQHKKPTVY
FT                 TEGQYVLIRDLHQKVGINNKLKSNYKGPYVVKKILNKNRYVVMDIPGFNIT
FT                 QRPYNSILSPDKMKPWVKPLNDAS"
XX
SQ   Sequence 4951 BP; 1569 A; 1129 C; 1060 G; 1193 T; 0 other;
     gtttcaaatt tcagaagtgg gattcactca tttccttcgg tcgcttcgcg attaaaacgc        60
     aacgtggtcg cgtgccggac atttttaaga aaagcacgcg agcgttcggt caattttaca       120
     agtgttatta aatcgttcga gacacaaaac cgatttcgga gcgtgagtca aataagtgta       180
     tagtgtacat cattgtcgct accccgtatt agacatttgt tttcgccctc atcgagatgg       240
     atcgggcatc cttagaaaac atgtctccgg aggagctccg acaacaagta actagatacc       300
     ggctcactcc gaacgctgaa acacgagaag cctacaccga ggcactcgtc cagcattttg       360
     agcggttttg cgcggctctc gaggaagggc cagatccagg ctcacagccg atcgaaacgc       420
     tgccgtcagc aaatccccga ccggctcgca ttggatcgac ctcggcgtca gcctcagagg       480
     cacaaggaag cacccagccg ccctgggacg ctctcgcccg gtgcctcacc tcattaacct       540
     cacagatgca acgacaggag tcgttgctcg agagggtggt tcgtcaattg aaccactctc       600
     cggcaggacc ggctaatttg gaatcaagca cggcaccgcc gagctcagaa tcgggcgcgc       660
     tctcaccacg accttcctcc gtcggcacag caaatttggg acacgcggtg agcatactcg       720
     ccactcagat tccagaattt ggaggcgccg tcacggaaaa tccacaggtg tggctcacac       780
     gggtcgatca ggtggcaagg gtgcacaacg tccctgacga tgtcaaatta ctggccgcgt       840
     ccagtaaatt aacaaaagtg gcacgaaaat ggtacgatct gagcacaggc tcaatattag       900
     agtcctggac tgctttcagt caagctctta caagccgatt taaaagaacg gctccgtacc       960
     atgtgacact acagcgcata gaagcgcgga aatggaacac aactaaagaa gcgttccaag      1020
     aatacgcgat ggaccacatc gcattaatgc acggcatgca actgccgatg caagaaaaaa      1080
     tacaattact cctgtccgga attaacagtc cggccgtacg agcaacagca gcagctatgg      1140
     acgtccactc aatggacgag ttccttgacc ggatggagcg agtggtagac gccaacccgg      1200
     atcaagaacg caaaagcgct tcgacgaaga atttcaagac agagacgtcg agcggtggcg      1260
     agaaagcagc aaattcagct aagcagaaac cctactgcgt gtactgcaag aaacccggac      1320
     atttccgcaa ggactgcctc aaaataaaga aacgggaaac gcagacatca gcaacgccga      1380
     cttcagccgt cgccgccgta cagcaggaca cggagaacac cgtggccatg gtgcaacacc      1440
     actgtaagca aataactttt gggcatgacc ctattattat tagtagaatt aataatgtaa      1500
     agtccgatgt aaccgcgtta atagatacag ggagtccggt ctccttcgcg cgcgctgacc      1560
     tattgagcgg cggttacgga ttaagaatac aggaggtcaa tcaagctccg gctttgaccg      1620
     caataaataa ttcacttatt aaaatcaccg gcgcgattaa tactgaaata gtgttcgcgc      1680
     aacacccaga aagaactttt aacattagtc tatttgtact caattcgcgc agtctggcga      1740
     ctcagataat aatcggcaga gattttctca ataaccattc actttttgcg atttatcgcc      1800
     cgtcgtggag caatgctcag agcagcgacg cggacatttc aagcacgttt ccggaagaac      1860
     tcttaaaagt gcacgcgtgt tatgagccgc atcgcgcgga cgaatatctc aaagaattag      1920
     caaaagaaat ggatcccgtg gagggaataa aattgataaa tctgttcgaa gaaatagccg      1980
     aattaaaggt cagccgcgtc gaagatgact actgcgtgcg agtcaatata aaggacacgt      2040
     cgacttacgc atacgcgccg cgaaagttcg cgtattccga acgcatacaa ttaagaaaaa      2100
     ttacggacga cttgattgcg cgcggaataa taaagacaag cgtttcgccg tattgcgcgc      2160
     gtatagttcc ggttaaaaag aaaaacggtg aactgcgtct gtgtgtagac ttgcgtccac      2220
     tgaatgcacg gatcgcgaaa cagaaatacc cctttccggt catcgaagac tgcatctcgc      2280
     gactcggtga taaatcaatt ttcacgttat tagacatgaa agacggcttt tatcaaatat      2340
     cagtgcatcc gtcggacaca aagtattttt cgtttgccac gcccgacggg caattcgaat      2400
     acacgaagct accttttggc tttgcggact caccggcaga attccaaaca agaatagttc      2460
     aaattttgca actgttgatt aggacaaaca aattaatcgt gtatatcgat gatatactca      2520
     tcgctaccga tacagtagac tcgaatttgc aagttcttaa acaaacattg atagaattta      2580
     aaaagtacgg ttttgaatta aatattaaaa aatgtcagtt cctcaaacgg aaaatcgaat      2640
     atctcggata tataattgct cgcaattcaa taactatttc ggatagacac accgaattaa      2700
     tctctaaatt tccgcaaccg aaaaccgtct tacaattgca acgatttctc ggattaacga      2760
     attatttccg gcggtttata aaaagttatt cattaattgc caagcctctc tataatctac      2820
     ttaaaaagga ttctaaattc gttttcagtc cggaatgccg gaaagcgtac gatgcgctta      2880
     aacgattttt aacttcttat ccgatcctcg caatttacaa tcctgcaaaa gaaacgcagt      2940
     tgcatacaga cgcaagtgca cacggcttag gagcgatcct cttgcaaaaa caagaagagg      3000
     gccaatggtc accgatagcg tattatagcc aaacgacaaa tcaggccgaa tcacgctatc      3060
     atagtttcga actcgagatg ttagcaatag ttcgagcggt ggagcgcttc cacatatatc      3120
     tttatggaat aacgttcacc atagttactg actgtaacgc gctcgtatat gcagttagta      3180
     aggcaaattt gaatccgcga atcgctcgct ggacgctcgc tttgcaaaat tactcgttca      3240
     aaataactca tcgcccgggc agccgtatgg cacacgtcga tgcattaagt agacagacaa      3300
     tgtacgtctc gacgctaccg ttagaaagga tattagaatt ccagcaattg caagatccta      3360
     cgctaaaaca gattgcgtta gatctcgaat atagagataa taaaaaattc aaattaatcg      3420
     aaggattagt ttatcgaaaa ggggacgatc gcgaccgttt cgccgtcctg gaatctatgg      3480
     tgaacgccat tctaaaaact tatcacgatg aattagcgca ctgcggttac gaaaaaaccg      3540
     ttcaaggaat ccaacaaacg tattggtttc ctgcactgcg aaagcgcgtg cgcgattaca      3600
     tttacaactg cattgtttgc ctgagtgcgg atgcgtcaac gcaccgactc gaaggcgagc      3660
     tccaaatcga ggaagcacct aacgagcctt ttacaattgt acacgtagat catttcggac      3720
     cgttacaagc gacggccgat ggctataaac atgttctgat cactatcgac gcgtttacgc      3780
     gatttacgtc tcttttcccg gtaaaatcta ccagttcaaa agaagtttgc atacatctat      3840
     caacgttatt taactttttc ggaataccgg aagaggtggt aactgaccgc ggatcggcat      3900
     ttacttcggc cgaattttct aatttcctcg cggaaagaaa aatcaaatta cgcaaagttg      3960
     ctgtcgcctc tccttgggta aacggaaaag tcgaacgcgt aaacagattc attaaaagct      4020
     ctcttgcaaa attagtaaaa tcgccagatg agtggaagga aaaactgcaa acgctgcagt      4080
     acgtgataaa taacacgttt catacggctc tcaggtgctc gccctcgaag atcctttttg      4140
     gattcgacca gcgaggtcac atagacaaac agctcaggaa cgagttggaa aaacaagcta      4200
     acgattctct ttcttttgat caacagcgag acaatactcg tgaagtagcg gtcaggacga      4260
     acgaacgact caaagaatat aataaactat attacgatcg tcaacataaa aagccaacgg      4320
     tttacacaga aggccaatat gttttgatta gagaccttca ccagaaagtc ggaataaata      4380
     ataaactaaa gtcaaattac aaaggcccgt atgtggtcaa gaaaatatta aacaaaaacc      4440
     ggtacgttgt catggacata ccggggttca acatcacaca acggccatac aattcaattc      4500
     tctcgcctga taaaatgaaa ccgtgggtca aaccactaaa cgatgcttca tagaatcgat      4560
     caaaagaaaa agaactcaat ttactgcgtt aaagattatt aatttaagtt actgtattaa      4620
     ataaaagaac tcaacttacc gcgttaaata ttattaattt aagttattga gtgaaagaaa      4680
     aaaactcaat ttactgcgtt aaatactgtt actttaagtt acttattatt actttaaaaa      4740
     ttgcttgcgt tgcatattaa agtattaaga aaattctctt gcggcgaata acgttacgtt      4800
     taatcaaata caagcgttta gattaagacc tacatttata aaacataatt gtaataaaac      4860
     caaagactgg cctaagatct acagatttaa gtaatcaatt gtattgaaat attaaacgtt      4920
     cgagacgaac gtttgtgcag gatggtcgaa c                                     4951
//
ID   Gypsy-9_LH-LTR repbase;    DNA;    INV; 288 BP.
XX
AC   ADOQ01003471;
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   30-SEP-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Linepithema humile genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_LH_;
KW   Gypsy-9_LH-I; Gypsy-9_LH-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-288
RA   Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Direct Submission to RU (29-SEP-2011).
XX
DR   Genome; ADOQ01003471; Positions   16923   17210.
XX
SQ   Sequence 288 BP; 96 A; 60 C; 52 G; 80 T; 0 other;
     tgtaagaagt ttcattaaaa tataagacct gctcctgcca cctattggat agacactaaa        60
     tataagtgcc cgagatgtgg caacactgta atacgagctg agctcgtacg taaagaattg       120
     ctccgaaaga gatctccgcg aactctcgaa caagtaacat tttaaattat aatcgtgatc       180
     tcgaataaaa ggctgagtag acttacaaac ttttaaatag tttgttatcc ggtaccttac       240
     cgtttcctat cctgacaccg tgcggttaag aacaatcaga atcttaca                    288
//
ID   Gypsy-9_LMi-I repbase;    DNA;    INV; 4430 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.12, Created)
DT   27-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_LMi-I;
KW   Gypsy-9_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4430
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3375-3375 (2014).
XX
DR   [1] (Consensus)
XX
CC   Positions [3394-3732] - Integrase core
CC   'AATAG' target site duplication
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..1001
FT                 /product="Gypsy-9_LMi-I_2p"
FT                 /translation="MATLEQVLRNLIEQQQLLTTAIREFVSVHTNARLSSL
FT                 TIPTFPPYDETAEDWIDYEKRLRQHFMAFNVADQQTCKSLFLSWISPKLYQ
FT                 LLSQLAPLKEPSSLSFDEMCTLLSTYFQKQTHVVASRVAFYRCKKQPHQTY
FT                 RAWATELQGLSRKCQFVTEIHKESYADSMVRDAILRSAPDKEVRQRALQLD
FT                 NPTLDEVLSIAQSFEITRAAGAQLEAWGDVGEIQSGRADGDAPGVSANEDV
FT                 AAVNTRPQRRPGGQNNMKQQIRGSRSLPSCPRCFTKHAREDCPQRGRLATD
FT                 AKRRDMFRLFASRKKCMMCTTG"
FT   CDS           1076..3397
FT                 /product="Gypsy-9_LMi-I_1p"
FT                 /translation="MLGKDVRMQVDTGSAATIINSQTYSKLGSPPLSAVTR
FT                 HLRTYNQQKISLLGQFDVDISYKSVVRTVSVFVVDSSGTENLFGYDAFRIF
FT                 GFSVDDTVHIVSDDIPYAQLDSLSGEFSTLFSPGLGCATNFEAHITLKPAA
FT                 RPRFFRARPIPVALRDAVKRELDRLTVSGVLRPISSSEWSSPLVIVKKPNG
FT                 SLRLCGDFKASVNAQCLIDTYPMPRPEELFSKLAGGQYFSKIDLSEAYHQL
FT                 PLDAESRQFLVLNTPFGLYQYQRLPFGAASSPAIFQRFLEQLLATVPGCIN
FT                 YQDDIVVTGATTVEHLSNLRTLFTVLQSAGLKCNLQKSRFFSTVDCLLGFS
FT                 VIGEGIRPLRQHVAAIEALPRPTSVKELQAFLGQIAYYHKFLPSAATVAHP
FT                 LHRLLRKNVPFRWSAECDTAFLRLKEQLQRAPCLATYCPGQHLVLATDASH
FT                 YGIGAVLAHRYADGSERPIAYASKTLTDAQRNYSQIEKEALAIVYALKKFG
FT                 VFLYGAKFHLITDHKPLVSLFHPSASLPDKAAHRLQRWALFLSRFNYEIHF
FT                 RPTAQHANADALSRLPMGPDPVFDRDELLCFHVDDAEQSVVDGFPINGDRL
FT                 ATATASDSVLCRVLHFIQRGWPDRPSGKASDPLRNYFALRFRLTARNGVVL
FT                 LSTDGASPRVVVPASLRASVLRLLHQGHWGVSRTKGLARRHVYWPGIDADI
FT                 THMVAACEPCAHQAPAPRTSLSPWPTPSRPWERIHVDYAGPFLGTYWLLVV
FT                 DAYSNFPFVVRCASPSTQRPPWH"
XX
SQ   Sequence 4430 BP; 963 A; 1256 C; 1024 G; 1187 T; 0 other;
     ctttattggc gacgagtttg ggattttccg tctcttttag taaagtgaac gttagtgtta        60
     tggcaactct agagcaggtt ctacgcaact taatcgaaca gcaacagctt ctcaccactg       120
     ctatacgcga gttcgtttct gtccacacca acgcccgcct gtcatcgttg acaattccca       180
     cttttccccc gtatgatgag acggcggagg actggataga ttacgagaaa cgccttcggc       240
     agcatttcat ggccttcaac gtcgctgacc aacaaacctg taagtcttta ttcctttcat       300
     ggatatcgcc aaagttgtat caactgttgt ctcaactcgc accgttgaaa gaaccttcct       360
     cgttgtcgtt tgatgaaatg tgtactcttc tttccacata ttttcaaaaa cagacgcatg       420
     tcgtcgcatc tcgtgttgca ttctataggt gcaaaaaaca gcctcatcag acctatcgcg       480
     cttgggctac tgaattacaa ggactcagtc gcaaatgtca attcgtaacg gaaattcaca       540
     aggaatcata tgctgactct atggttaggg atgcgatttt gcgttctgca ccggataaag       600
     aagttcgcca acgagctctt cagttggata atcccacgtt ggacgaagta ctttccatag       660
     ctcagtcctt tgaaatcact cgtgccgcgg gcgctcaatt agaagcatgg ggtgacgtcg       720
     gcgagataca gtcaggtcgg gcagacggtg acgcgccagg cgttagcgca aacgaggatg       780
     ttgccgcagt aaacacgcgc ccgcagcgtc ggccaggtgg tcaaaacaac atgaagcagc       840
     agatcagagg ttcgcgttct cttccttcct gccctcgctg tttcactaaa catgcgcgtg       900
     aagattgtcc acagcgtggg cgacttgcca ccgatgcaaa aagaagggac atgtttcgtc       960
     tgtttgcaag tcggaaaaag tgcatgatgt gcacgacggg gtagccgatg atgattctgt      1020
     actgtatgta aattgcgtgt cccctcattc cggcaaactt tacctcacgg tgcaaatgct      1080
     aggaaaggac gtgaggatgc aagtcgatac cggctcagcg gccactatta ttaactcgca      1140
     gacgtattcc aagctgggat ctccgccgtt gtcggccgtt acgcgtcacc tacgcactta      1200
     taatcagcag aagatctcac ttctaggtca attcgacgta gatatttcct acaaatctgt      1260
     tgtgcgcacc gtcagtgtgt ttgttgttga cagcagtggc actgagaatt tatttgggta      1320
     cgatgcgttt cgcatttttg gattctcagt agatgacaca gtgcacattg tttccgatga      1380
     cattccttat gctcagcttg attccttatc aggggaattt tcaacactct tttctcctgg      1440
     tctaggttgt gccaccaatt ttgaggcaca tattactctc aaacctgctg cccggccgcg      1500
     gttttttcgg gcccgaccaa ttcctgttgc cttgcgtgac gcggtcaaac gggagcttga      1560
     tcggctgact gtttcaggtg tattgcgtcc catctcttcc agcgagtggt cctctcccct      1620
     cgttatcgtt aaaaaaccca acggcagtct tcgcctctgt ggtgacttca aagcgtccgt      1680
     caatgctcag tgccttattg acacatatcc aatgcctcgc cctgaagaat tattttcaaa      1740
     gttggctggg ggccagtact tttcaaagat cgacctatct gaagcttatc accagcttcc      1800
     gttggatgct gaatctcgcc agtttcttgt tctcaacact ccgtttggtc tttatcagta      1860
     tcaaaggttg ccatttgggg ctgctagttc ccccgccatc tttcaacgat ttttggaaca      1920
     attgctcgcc actgttcctg gctgtataaa ttatcaagat gacattgttg tgaccggggc      1980
     caccactgtc gaacatctca gcaaccttcg gacactcttc acggttttac aatctgcggg      2040
     gttaaaatgc aacctccaga aatctcgttt tttttcaaca gtcgattgtc tacttgggtt      2100
     ttcagttatc ggtgaaggta ttcgtcctct tcgacagcat gttgctgcta ttgaggctct      2160
     ccctcgtccg acttcggtca aggagctcca ggcctttctg ggacaaatag cctattatca      2220
     caagtttttg ccgtctgcgg caacggtggc tcatccacta caccggttgc ttcgtaagaa      2280
     tgtgcctttt cgctggtccg ctgagtgtga cactgctttt cttcgtctca aagaacaact      2340
     gcagcgggcc ccttgtcttg ccacatattg ccctggacaa catttggttc tagccaccga      2400
     cgcctcccac tatgggattg gtgctgtttt ggcccaccgt tacgctgatg gctcagaacg      2460
     tccgattgct tatgcgtcaa agacactcac cgacgcgcaa cggaactatt cccagataga      2520
     aaaggaggcc ctcgccatcg tgtatgcctt gaaaaagttt ggtgtctttc tttatggggc      2580
     aaagtttcat ctgatcaccg atcacaagcc cttagtttct cttttccatc cttcagcctc      2640
     gctccctgac aaggcagccc accgcctaca acgttgggct ctgttcctct ctcgcttcaa      2700
     ctacgagatt catttccgac ccactgctca gcatgccaac gctgatgcgt tgtcccgttt      2760
     gccaatgggg ccagaccctg ttttcgaccg tgatgagctg ttgtgctttc atgtggacga      2820
     cgccgagcaa agtgttgttg acgggttccc catcaatggc gacaggttag ccacggctac      2880
     tgcttctgat tctgttctgt gtcgtgtgct gcatttcatt caaaggggct ggcctgatcg      2940
     accatctgga aaggcctctg atccattgcg caactacttt gcccttcgtt tccgcctcac      3000
     tgctcgtaat ggtgttgttc tcctctccac cgatggggcc tcaccgcgtg tggtcgttcc      3060
     tgcatccctt cgggcttctg ttcttcgtct gcttcatcag ggacactggg gtgtctcacg      3120
     cacgaaaggg ttggcgcgtc ggcatgtcta ctggcccgga atcgacgcgg acatcacaca      3180
     catggttgct gcctgtgaac catgtgccca ccaggctcct gctcctagga catctctatc      3240
     tccgtggcct acaccctcac gcccgtggga gcgcatacat gttgactatg cgggtccctt      3300
     ccttggcacc tactggcttc ttgtggtgga cgcctattcc aattttccct ttgttgtacg      3360
     ttgtgcgtca ccttccacgc agcgaccacc ctggcactag ccagaatatt ttccttggaa      3420
     ggcctccctt ccacgctggt ctcggacaat ggcccgcagt ttacttcctc tgaattctcc      3480
     gacttttgta ctcaacgtgg tgttacgcac atcactgctc cacccttcca tcctcaatcc      3540
     aatggcgagg ttgaacgcct cgtccgaacc ttcaaatcac aaatgaaaaa attgctcact      3600
     actcttcttc tgatgaagcc ttgttccagt tcctggagtc ctaccgtttt actcccattg      3660
     gtgaccacag tccggccgag ctccttcatg gccgccagcc tcgtaccttg ctccaccttc      3720
     ttcgtcctcc aacccatcgg ccagggcaga ctccattcac aaagttctcg gagggtgctc      3780
     ctgtgtgggt acgggggtat ggaaggcgcc caaaatggat tcagggtcag atcctgagcc      3840
     ctcgcggcaa acgcctttac agagtccgca cgactgctgg agaagtggtg cgccacgtgg      3900
     accaacttcg gccccgagtg acttcggcag tgggttctac agcagcaccg cctacaccat      3960
     ctccaccaag agctgctccc aacggggtgg aggtgccacg attcgtccca tggtctgcgg      4020
     cacaacaagc caaccacgag cacagcaaca gccaccgaca gttcctgtac cagttaccaa      4080
     cccagaatca caagaagacg tcatcatgca cgaggtcgaa caaacacctc aggaagagtc      4140
     atcctctccg aatactcaac ctgatcaatc acaaggttca ccggtcattc caacacacta      4200
     tcgtgcatca ggtgtcccac accaggagca gacatctagc agctctccaa tgtctccaat      4260
     catcgcttca aggcatcttc ccacaagact tgggtctagt cggggacact ttcgtccata      4320
     tgtgaaggtg cctcccaggg agttcgcaga tacgcacgca gaacacatgg acatcggcgc      4380
     tcttcacacc acctacagca agtgagttct caaatcaaaa gggggagaag                 4430
//
ID   Gypsy-9_LMi-LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.12, Created)
DT   27-FEB-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_LMi-I;
KW   Gypsy-9_LMi-LTR.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-242
RA   Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3376-3376 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 242 BP; 58 A; 50 C; 64 G; 70 T; 0 other;
     tgttgtggtt tcgcgcgcga tgtttgacat gccgccgtta gattccacgt gaccgactgt        60
     aggggcgctg ctctctaaat aatgctacgg cagcgccaac agaacgctgc acggggaagc       120
     gcggagctat gaagacagtt ctggttcaac tacttctgtg tacacatgta actgcctttc       180
     aagtgtgttt tgttttgtat gaattccgga agtggaatta aagtgtatat aaagttacta       240
     ca                                                                      242
//
ID   Gypsy-9_MeUr-I repbase;    DNA;    INV; 3942 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_MeUr-I.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-3942
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3044-3044 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..3850
FT                 /product="Gypsy-9_MeUr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MASNTVNIVFPGQFNPKTDRWCDYKEQLLCALEVAGI
FT                 CENNLNKARSIFLSQCGKDMYALIASLVVPQRPTNVDFEVIIGVLDKFYEP
FT                 DANEILEAGKFHKRMQMPNESIQEFVAALGQLGAKCNFLDLKRQLRDRLVL
FT                 GVRDNRLRRDLLKTKGLGYEQAVQICLNYQASVLDLYPDTNESKQNSSTDL
FT                 VPMDIGKISSSECQRCARTHSTGERCPFVKAKCYFCKKFGHIAPVCRKKLS
FT                 KINQVNDSQDRNFNFKPEENMMGIYSCLERLIKPIMVEIIIEGVKLKMEVD
FT                 SGASQSIISEEVYKKLWPLPPPLHSTNVKLVTWTRETLQVLGEAHVRVRLG
FT                 DKEGQCELLVVSGKGPSLLGRNWFDTLDIHIAGLCWSEEQLVQYKEEFPAL
FT                 FMDGLGTYKGPEVSLHVQENACPKFLKSRPVPFPLKEQVNKELNNMISSGI
FT                 LTPVKYSKWATPLTIVKKEDGSLRLCGDYRSTVNAAIKVETYPLPTSVEAF
FT                 VKLSGGRIFSKLDLRQAYTQLKVDDETAKLLTLNTPLGLMKMNRLAFGVNA
FT                 APAIFQRLMSTTLADMEGVACLLDDIAIMGRNKEEHDKRLRMVLQKVQDMG
FT                 FRLNLKKCIFGTNSITFLGHMIDENGLHPSPVKVKEIQEKPAPINKETLRA
FT                 FLGLYNFYEKFLPNKATILEPLYRLLEKKTQWSWSKKENDAFKNAKNLLTS
FT                 DLTLVGYELDRELLLICDASEYGLGAIISHVMDDKSERPVMMASRTLQAHE
FT                 RRYGQIDKEALAVMYGLSKFHEFLAGRSFTIITDHKPLVGLFNPKKPIPGQ
FT                 ISPRMLRWSLKLSCYNYNIVYRPGKAIGXADALSRWNEPCVANLGTDRLRD
FT                 VLLLEEQPEGWNLDAKTIAIETKKDPLLQKIIFFVLHGWSCSNTDANIQPF
FT                 WIRRDALSLDKDCLLWCNRVVIPTSLQQDVLKLLHAPHAGIVQTKAYARGY
FT                 VWWVGMDKQIETIVAECEQCQMARNNPPRESQAWIIPDKPWSRIHVDFAGP
FT                 FQGKTFLVLIDSYSKWIEAEIMSSMSTTNIIQSLRRMFVSQGLPDTLVSDN
FT                 GRSFTSDEFNTFLKKNGIKHLYSPPYHPATNGQIERAIQTFKNKVRKMSQV
FT                 NVPWAEKLPKILYALRTVPNSCTNKTPAEMLNGRKYRTAISILHPDNIQSP
FT                 SEHLLEAAAQRASIRSFVVDQPVLVRNYGPGEKWRRAMIEMAEGPSTYLVR
FT                 TETGELLRRHVDQILSRRARQVNVSQESPMIDRPSSRSTSPDPQIVIPPPE
FT                 QWPDIIGIPQ"
XX
SQ   Sequence 3942 BP; 1322 A; 669 C; 871 G; 1079 T; 1 other;
     ttggcgactg aggaaaatta atattattaa tgcaaatatg gcttcaaata ctgtgaatat        60
     tgtgtttcct ggacaattca accccaaaac agacagatgg tgcgattata aggaacaact       120
     actgtgtgcc cttgaggtag cagggatatg tgaaaataac cttaacaaag cgcgttcgat       180
     atttttgtcg caatgtggaa aggatatgta tgcattgata gcatcattgg tagtacctca       240
     aagaccaaca aatgtggatt ttgaagtcat aattggagtt ttagacaagt tctatgaacc       300
     tgatgccaat gaaatattgg aagcagggaa gttccacaag cgcatgcaaa tgccaaatga       360
     aagcattcaa gaatttgtgg ctgctttagg tcaacttggg gcaaaatgta acttcctgga       420
     tttgaagcga cagttgagag accgtttggt gcttggtgtg cgagataatc ggttgcgaag       480
     ggacctgttg aagacaaagg gtcttggata tgagcaagca gttcaaatat gtctgaacta       540
     tcaagcttca gtattggact tgtatccgga caccaatgag tctaagcaaa actcatctac       600
     tgacttagtg ccgatggata ttggaaagat atcatctagt gaatgccaac gatgtgctag       660
     aacacattct acaggggaac gatgcccatt tgtgaaggcc aaatgttact tttgcaagaa       720
     atttggacat attgcgcctg tttgtaggaa aaagcttagt aagataaatc aagtgaatga       780
     ttcacaggat agaaatttta acttcaagcc agaagaaaac atgatgggta tctatagctg       840
     tttggaaaga ttgataaaac ctataatggt agaaatcata attgagggag tgaaattgaa       900
     aatggaagtt gattctggag catcacaatc tataatttct gaggaagtgt ataagaaatt       960
     atggccattg cctcctccct tgcattcaac aaatgtaaaa ttagtaacgt ggacacgaga      1020
     aactttacaa gtattaggag aagcccatgt tcgagtaaga ttgggtgaca aagaaggaca      1080
     atgtgaattg ctagtagtat caggtaaagg cccaagtttg ctgggaagga attggttcga      1140
     cacattagac atccacattg cagggctatg ctggtctgaa gaacaattag tacaatataa      1200
     ggaagaattc ccagcattgt ttatggatgg tttgggaact tataaagggc cagaggtttc      1260
     tcttcatgtc caagagaatg cttgcccgaa atttttaaag tctcgtccgg ttcccttccc      1320
     attaaaggaa caagttaaca aagagttgaa taacatgata agttctggta ttttaacccc      1380
     tgtaaaatat tctaaatggg ctactccact gactattgta aaaaaggaag atggatcatt      1440
     acgtttatgt ggtgattaca ggtccactgt caatgccgca ataaaggtag aaacatatcc      1500
     gttgcccaca tccgtggaag cttttgtgaa gctaagtgga ggtcgcattt tcagcaaatt      1560
     agacctaagg caagcttata ctcaattaaa agtggatgat gaaacagcaa aactgttaac      1620
     tctaaataca ccactaggtc ttatgaagat gaacaggttg gcatttggtg tcaatgctgc      1680
     tccagcaatt tttcaaaggt taatgtctac tacacttgca gatatggaag gagtagcttg      1740
     cctcttggat gatattgcca taatgggtag gaataaggaa gaacatgata aaaggctaag      1800
     gatggtatta caaaaagtac aagatatggg attccgcctt aatttaaaaa aatgtatttt      1860
     tggaactaat agtattacat tcttaggcca catgatagat gaaaatggac tccatccatc      1920
     ccctgtaaag gtaaaggaga tacaagagaa acccgctcct ataaataaag aaactttaag      1980
     agcgttctta ggcttatata atttctatga gaaatttttg ccaaataaag ctactatttt      2040
     agaaccatta taccgcttac ttgagaagaa aacacaatgg tcatggtcta aaaaagagaa      2100
     tgatgcattt aaaaatgcca aaaatctttt gacgtcagat ttgactttgg tgggatatga      2160
     gctggataga gagttgttgc tcatatgtga tgcatcagag tatggtctgg gagccataat      2220
     ttctcatgta atggatgaca aatcggagag accagttatg atggcttccc gtaccttaca      2280
     agctcatgaa agacgatacg ggcaaataga taaagaggct ctggctgtga tgtacggtct      2340
     ttccaaattt cacgaatttt tagctggtcg atccttcacc attatcactg atcacaagcc      2400
     gttggttggg ttatttaacc ctaaaaaacc aataccaggt caaatttcac cacgaatgct      2460
     gagatggtca ttgaaactta gttgttataa ctataatata gtttacagac ctggtaaagc      2520
     gattggcwat gcagatgcac ttagtagatg gaatgaacct tgtgtggcaa acttaggaac      2580
     agaccgatta agagatgttc tgctattgga agaacaaccg gagggatgga atttggatgc      2640
     taaaacaatt gcaatcgaaa caaaaaagga cccgctgttg cagaagatta tattttttgt      2700
     gctacatggg tggtcttgtt caaacactga tgccaacata cagccgttct ggatacgcag      2760
     agacgctctt tcccttgata aagattgttt attatggtgt aatagagtcg tcatacctac      2820
     gtctctccaa caagacgttt tgaaattgtt acatgcacct catgccggaa ttgtgcagac      2880
     aaaagcatat gccagaggat atgtatggtg ggttggcatg gataaacaaa ttgaaaccat      2940
     tgtagctgaa tgtgaacaat gccaaatggc aaggaataat ccacctagag aatcacaagc      3000
     atggattata cctgacaagc catggagtcg cattcatgta gattttgctg gtccatttca      3060
     aggcaagaca tttctagttc taatagatag ttacagtaag tggatagagg ctgagataat      3120
     gtcgtccatg agtactacaa atattataca gagcctgagg cgaatgtttg tatcacaagg      3180
     tctccctgat acattagtgt cagacaatgg cagaagtttt acatcagatg aattcaatac      3240
     atttttgaaa aagaatggaa ttaagcattt gtattcaccc ccttaccatc ctgctacgaa      3300
     tggacaaatt gaacgagcaa ttcagacatt caaaaataaa gttagaaaga tgtcccaagt      3360
     gaatgttccc tgggcagaga agctacccaa gatcctatat gcactacgca ctgttcctaa      3420
     cagttgcact aataagacac ctgctgagat gttaaacgga cgcaaataca gaacagcaat      3480
     ttctatacta cacccagata atatacagag tccaagcgaa catttactag aagcagcagc      3540
     tcaaagagct tcaataagaa gctttgtggt agatcaacca gtgttagtac gtaattatgg      3600
     gcctggggaa aagtggcgaa gggccatgat tgaaatggca gaaggcccaa gtacatattt      3660
     ggtgagaaca gagacgggtg aattacttcg acggcatgtg gatcagatat tgtccagaag      3720
     agctagacaa gttaatgtca gccaggagag tccaatgatt gatagaccta gttcgaggtc      3780
     aacatcacct gacccacaaa ttgtgatacc acctccagaa cagtggccag atatcattgg      3840
     aatacctcaa taattgtata atctaataac atagggagca gttgattgta attataggaa      3900
     ataattttgt aatattaata cttattatat gaggggaagg ta                         3942
//
ID   Gypsy-9_MeUr-LTR repbase;    DNA;    INV; 116 BP.
XX
AC   .
XX
DT   21-MAY-2021 (Rel. 26.06, Created)
DT   21-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from the bear giant-skipper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_MeUr-LTR.
XX
OS   Megathymus ursus violae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Hesperioidea; Hesperiidae; Megathyminae; Megathymus;
OC   Megathymus ursus.
XX
RN   [1]
RP   1-116
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the bear giant-skipper genome.";
RL   Repbase Reports 21(6), 3062-3062 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 116 BP; 39 A; 7 C; 24 G; 46 T; 0 other;
     tattgtgtat tgatattaat tgaaatgtca ggggatagtt aaaatgtaaa agattatgtg        60
     ggtagaaaat aataaagtca gtttttgctg tcatgtcaac ttgttgtatc atttta           116
//
ID   Gypsy-9_MoPha-I repbase;    DNA;    INV; 5090 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_MoPha-I.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-5090
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1161-1161 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           29..967
FT                 /product="Gypsy-9_MoPha-I_1p"
FT                 /note="gag."
FT                 /translation="MNRQNTAIMPTTSDKLRTGGPAKQEIMDGGTTADDSS
FT                 ADEIETVRGTPRTRRRGTFSDTAALLDTVRKWGCQFDGKDGVAFLERLEDL
FT                 RLSYGLTQAQLQRCLPLLFKDQALLWYRNNRDDWRSWADFEKDFRRYFVPT
FT                 KTRFELEAEIARRTQGPNETAREYVTALQTLMRRHGGITAEDRLERIYHNL
FT                 RPEYHLYARRNDFLDLPGLLRLTDDYERARRYEREYQPPKGKEKPKTAAAA
FT                 IIPAYDSRECCWGCGQRGHTRRFCKRPPKLFCSQCGKEGVLTRNCHGTPGN
FT                 AKQAEENEGASRSTASPDTGT"
FT   CDS           673..4074
FT                 /product="Gypsy-9_MoPha-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="LRARQALRTGIPTTEGQGEAEDRRRRHHPRVRLPRVL
FT                 LGVRTTGAHPPLLQETPKAVLLTVRKRGGTHPELPRHAGKRQAGRGERGGL
FT                 PVYRQPGHRHVKAQLPSISPRDKQTDPRPWGTIEIAGQQHDALLDCGAILS
FT                 YVAEDTAERIRPYAQVRRITAAVQLADGRTGQINEEMRVHIRLGHYHGLQT
FT                 FHVLPGLTSTVIAGVHLLRKAGFRWSLPTIAALRPTGTPTAEPTAGLTACS
FT                 DEQNAELQALLDEFLPKFTQLRGTTPLTEHRIRLKSDQEPIRQRYRTFNPA
FT                 LQGIIDKEIDEMLHEGHIEPTSSPWNSGVVLAKKKDGRYRFCIDFRKVNEV
FT                 TVRDAYPLPPVQHILDQLREARFLSTIDLKNGYWQVALHPDSRPMTAFAIP
FT                 GRGQFRFTVMPFGLHAAPATFQRLLDRVIGPDMEPRAFAYLDDIVVLGRTF
FT                 NEHLRNLREVLQRLLDANLKINTDKCHFARPSLKYLGHVVDQEGLRTDPDK
FT                 VKAIMEIPPPASLPALRRFLGMTSWYRRFIPGIATLAAPLNDLLRKNRRWE
FT                 WTASQQRAFEDIRNSLASAPVLHCPDFSATFVLQTDASDAGLGAVLTQTIE
FT                 GQERVVAYASRALRQPEKHYSATEKECLAVVWGIEKMRPYLEGYRFRVITD
FT                 HFSLRWLRSLENPTGRLARWAVALQQHDFEVEYRKGALNYVPDALSRQPLE
FT                 EGEDEEENDNTGQALAAVTPTCKWHQRTMQTVREKPEKLPDYSIQNGNLYR
FT                 HFHERHSTDDNDEPTAWKLCIPQQQRQEVLKECHDAPTAGHLGIAKTLARL
FT                 AQKYYWPGMFRQATQYVRRCANCREHKPSQQQTAGRMHHASVDAPNVVIAI
FT                 DLIGPLPRSSEGHTWILVCQDIFTKWLTTKPLRQATAAAVTRAVEKEVILQ
FT                 HGCPRRIITDNGRQFISREFTDLLAQAGIEHRKTPPYSPQCNPVERANRTL
FT                 KTMVAQFVDQNHRHWDRHLPQLTFAANTAVHESTGYTPAMLTYGHELTAPG
FT                 TLRARTEQTLEEDLPAGRPTARAQQIQKLRDRFEIATRRQEEATARQARYY
FT                 NLRRRDWRPEIGQQVYRREHPLSNAQENFAGKLAPRYTGPYTVDRHMSPVI
FT                 VRLRDNNNRIIGAVHVKDLKESPDTE"
XX
SQ   Sequence 5090 BP; 1285 A; 1746 C; 1361 G; 698 T; 0 other;
     aaatggcgcc cgaacaggga ctggttgaat gaataggcaa aataccgcga taatgccgac        60
     cacaagcgat aaactccgca ccggcggacc agccaagcag gagataatgg acggagggac       120
     cacggccgac gacagcagcg cagacgaaat cgaaactgtc cgagggaccc cccgaacacg       180
     acgccggggt accttctcgg acaccgccgc actactcgat accgtccgca agtgggggtg       240
     ccagtttgac ggaaaggacg gcgtcgcctt cctagagcgt cttgaggatc tacgccttag       300
     ttacgggctg actcaggcac aattgcaacg gtgccttccg ctgcttttca aagaccaggc       360
     gctactctgg taccgcaaca accgggacga ctggaggagc tgggcggatt ttgaaaaaga       420
     tttccggcga tacttcgtgc ctaccaagac ccgcttcgaa ctagaggccg agatcgcccg       480
     ccgaacccag gggccgaacg agaccgcacg ggagtacgtg acggcgctcc agactctgat       540
     gcgccgccac ggagggataa ccgcggagga ccgcctggag cgcatctatc ataacttgcg       600
     gccggaatac cacctatatg cgcgccgcaa tgacttcctc gacctcccgg gactactaag       660
     gctcaccgat gactacgagc gcgccaggcg ctacgaacgg gaataccaac caccgaaggg       720
     caaggagaag ccgaagaccg ccgccgccgc catcatcccc gcgtacgact cccgcgagtg       780
     ctgctggggg tgcggacaac gggggcacac ccgccgcttc tgcaagagac ccccaaagct       840
     gttctgctca cagtgcggaa aagagggggt actcacccgg aactgccacg gcacgccggg       900
     aaacgccaag caggccgagg agaacgaggg ggcctcccgg tctaccgcca gcccggacac       960
     cggcacgtaa aagcccagct accgagcatt agcccccgag acaaacagac cgatccgcga      1020
     ccctggggga ccatcgagat cgccgggcaa caacacgacg ctctactaga ctgcggcgca      1080
     attctgtcgt acgtggccga ggataccgcc gaacgcatac gaccgtacgc ccaagtccgc      1140
     cgcatcaccg ccgccgtaca actggccgat ggacgaaccg gccagatcaa cgaggaaatg      1200
     cgcgtccaca tacgcctggg gcactatcac ggactgcaga ctttccatgt gttgccaggg      1260
     ctgacctcca ccgtaatcgc cggcgtccac ctactgcgca aagccggttt tcgctggagc      1320
     cttccgacaa tcgccgccct gcggcccacc ggaacaccta ccgctgaacc aaccgccgga      1380
     ctcaccgcct gctccgatga acaaaacgcg gaactgcaag cgctattgga cgaattcctg      1440
     ccgaaattca cacaactaag aggcaccacg ccgctcaccg aacaccgcat ccgcctgaaa      1500
     agtgaccagg aaccgatacg gcagcgatac cgaacgttta accccgctct gcaaggaatc      1560
     attgataaag agatcgacga gatgctgcac gaaggacata tcgagcctac cagcagtccc      1620
     tggaattccg gcgtggtttt ggcaaagaag aaagacggac ggtaccgctt ctgcattgac      1680
     tttcgtaagg tcaacgaagt cacggtacga gatgcctacc cgctaccacc agtgcaacac      1740
     atcctcgacc agctacggga agcccgtttc ttgtcaacca tcgatctcaa gaacggctac      1800
     tggcaagtcg ccctgcaccc ggacagccga ccgatgaccg ccttcgccat accagggagg      1860
     gggcaattcc gttttacagt gatgcccttc ggactccacg ccgcaccagc tacattccaa      1920
     cgactactgg accgcgttat cggcccggac atggaaccgc gagccttcgc ctacctcgac      1980
     gacatcgtgg tgctcggaag gacattcaac gaacacctcc gcaatctccg cgaagtacta      2040
     caacggttac tagacgcaaa cctgaagatc aacacggaca agtgccactt cgcgcggccc      2100
     agcctaaagt atctcggaca cgtcgtcgac caggagggac taagaaccga tcctgacaag      2160
     gtaaaggcca tcatggagat cccgccgccc gcctccctgc cggccctccg acgatttcta      2220
     ggaatgactt cctggtaccg ccgcttcatt cccggcatag caacactggc cgcaccgtta      2280
     aacgacctcc tccggaaaaa caggcgatgg gagtggaccg ccagccagca acgggccttc      2340
     gaagacatac ggaacagcct cgcctccgca ccagtactcc attgcccgga cttctcggcc      2400
     actttcgttc tgcagacgga cgccagcgac gcaggactag gggcagtcct aacacagacg      2460
     atcgagggac aggagcgcgt ggtcgcatat gcaagcagag cactgagaca gcctgagaag      2520
     cactattccg caaccgagaa agagtgcctc gcggtcgtat ggggcataga gaaaatgcgg      2580
     ccgtacctgg aaggataccg gttccgtgtc atcaccgacc acttctctct ccgctggctc      2640
     cgctcgctag aaaacccgac cggccgcctg gcacgatggg cggtggccct acaacaacac      2700
     gacttcgagg tagagtaccg gaaaggcgcc ctaaattacg tgcccgacgc cttgtcgcgt      2760
     cagcccctag aggaggggga ggatgaagag gaaaacgaca acaccggaca agcactggca      2820
     gccgtgacac cgacatgcaa gtggcaccag cgtacgatgc agaccgttcg ggaaaaacca      2880
     gagaagctgc cagactactc aatacagaat ggcaacctgt accgccactt ccacgagcgc      2940
     cattccaccg atgacaatga cgaaccgacc gcatggaagc tctgcatacc gcaacaacaa      3000
     agacaagaag tcctgaagga gtgtcacgac gcccctaccg ccggccacct gggaatcgcg      3060
     aagacgctgg cccgactggc acaaaaatac tactggccag gaatgtttcg acaggcaaca      3120
     caatacgtcc gccgctgcgc gaactgccgg gagcataaac catcgcaaca acaaacggcc      3180
     ggacgcatgc accacgccag tgtggatgca cctaacgtgg tcatagccat cgacctcata      3240
     ggaccgctac caagatcctc cgaaggccac acctggatcc tagtgtgcca ggacattttt      3300
     acaaaatggc taacaacgaa gccactacgg caagccaccg ccgccgccgt gacaagggcc      3360
     gtcgaaaagg aagtcatact acaacacgga tgcccccgcc ggatcatcac ggacaacggc      3420
     cgccagttca tcagccgcga attcacggac ctactcgcgc aagccggcat cgaacatcga      3480
     aaaacgccgc catactcgcc gcaatgcaat ccggtcgagc gagccaatag aacgctcaaa      3540
     acgatggtcg cgcaattcgt cgaccaaaac caccgccact gggaccgcca tctaccacaa      3600
     ctaacgttcg ccgccaacac cgccgttcat gaaagcaccg ggtatacacc agcgatgctc      3660
     acatatggcc acgaacttac cgcacccggc acgctacgag cccggaccga acaaaccctg      3720
     gaggaggacc tgccagccgg ccgacctacc gcgcgggcgc aacaaattca aaaattgcgc      3780
     gaccgattcg aaatcgccac acgccgccag gaagaagcaa ccgcaaggca agcccgatac      3840
     tacaacctgc gaagacgcga ctggagaccc gagatcggcc agcaagtcta tcgccgcgaa      3900
     catccgctct ccaacgcgca ggaaaacttc gcgggaaaac tggcgcctcg atacaccggg      3960
     ccatacacgg tcgaccgcca catgtcacct gtcatcgtgc gacttcgcga caacaacaac      4020
     agaattatag gagccgtaca cgtaaaggat ctgaaggaga gtccggacac cgaataacaa      4080
     caaaaacgga gggtataaaa aggagcgatg agcccgccag atcagagagt gatcaatagc      4140
     agcagcagga tgccgaaagc aaggagctct cttcgcgacc gtctcgcccg cgccatcgcc      4200
     ggacccccac ggatcccgac gagcagccgg cccttcgagg cctccgcccg gacaccagcg      4260
     cgcagccaac ggcgcgagaa cgagccgctc agcaccgccg caccagctcc gatcccggct      4320
     ccgacaccgc cgtccggacc acgccgacca gcagtggcgc gccagcggac gacacgctct      4380
     cgccaggaac ggctgtacgc cgaggcaccg ccagcagccg acaacgggcg aagcgtgttg      4440
     ctcgccacgt tcgggtccac attgtcggac ctggacgacg acgacgacag tggaggtgag      4500
     tcaaccgccg taccggagga gcgcacgaca cccgcgccga tgcccgacat agcagcgttg      4560
     cgcctcgagg agtccggtcc taccgcgcca ccagcaccgg ccgcaccgcc accgacggca      4620
     gtaccagagc ccgcaccgcc atcctccacc gtcgagacgc acgacaggtc gccgcaccgc      4680
     ctccaccggc ccggccacca tccgccgctg ccaaaaccgc cacagctgaa ctgactcagc      4740
     cgccgctgcc aacgccgccg ccgacaccgc ccgcatcgcc cgggtatttc acccggccgc      4800
     agccgacacc gacgccgacc gggtactcca cccagccacc gccgacacca ccatcaccag      4860
     caaccgtgac gtcaacccgc caacttcgcc actcgccggc caatccgtca tccccagcga      4920
     agttctacgg accatcccct gggaacggat accgccaggt cgccgctacc gccaccaggc      4980
     cctcggacac cgcatcgtgg tgaagcacca gcccgacggg tcgtggtata tccgctaata      5040
     aaaaatccgt cattctttgt acatagagac ggggtctgcc gagggggagg                 5090
//
ID   Gypsy-9_MoPha-LTR repbase;    DNA;    INV; 1028 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 27.02, Created)
DT   28-JUN-2021 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from the pharaoh ant genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_MoPha-LTR.
XX
OS   Monomorium pharaonis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Monomorium.
XX
RN   [1]
RP   1-1028
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the pharaoh ant genome.";
RL   Repbase Reports 22(2), 1173-1173 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1028 BP; 238 A; 366 C; 249 G; 175 T; 0 other;
     tgtaacgagc cgttcctccg ccacgttaag gcatacggat acgaggccgt taccctccta        60
     cctcgtgtag tcccctccgc ttatctcgtt ctccccgcac acctccgctc ctcttgtcac       120
     caaacggggg ctataaaagc cctccgctgg tgataagaga tcagatctcc ccggtctagc       180
     gtattgagcc gaccgatcca ctcagcgaat tgagctgagc acccagagca cgcactgagt       240
     gccgaactta acctaaaacc cggcttcccg cactagcgcg tactgagcgc ttcctcgcgc       300
     cacgtagtga gtggcagaac accgccccgc tcgtcacccg gatcccggta cgcgtagtga       360
     gctaccgatc ccgaccgcac acggggaccc cgtactgagg ggaaaccgcc gacgcggagg       420
     atcatccacg cgggatgatc ctcgacgata ataacagctg atcgtcgaac agctgatcac       480
     cgtggctgtc gagccgagct ccgcgccgta ccgcgcagtc gcgcaccgcc gcggccaatc       540
     gtgacgccgc accgaccgac tcggcgaatg cgaacgccgc accgtaccgc gcagccgcga       600
     ccgtaacgcc gcagccaatc cggctaccac cgcgaccgac acgagcgccg ccacgcatta       660
     caccgccgcg attacaccgc cacgagtact gtaatccgta agaccggccg ctaacgccga       720
     tcgacgcacc gaccgacaca cgggccgtac gcccgccgca gccaatccgg caccgaatac       780
     tcgacgcgca catgcgcccc gcgacacacg tcgccacaac cgatcgcccg cgactcgcat       840
     agcgagacat tagttgtaag tactagagta gggactttgt atatattagc taggatttag       900
     tagaataaat attaattgtc taaacttaca ccgcttgcct ctatcattca ttcaaccagc       960
     ccgccgcccg aaccctgaat taaccgcggc tatccgtagc acattacgat agaaaattca      1020
     cggttaca                                                               1028
//
ID   Gypsy-9_MSe-I repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_MSe-I.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-4117
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 887-887 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
SQ   Sequence 4117 BP; 1508 A; 740 C; 808 G; 1061 T; 0 other;
     ttggcgacga ggatatggaa ctacaaaaac ttcgaagaat acgagcctct ataagggggc        60
     agcttaaaaa attacaaaac tatttaatac aaaatgaaca agaaattcca gactacgaat       120
     taaaagcaag actagaacat ttgacaactt atcaaaagaa gttcgaccaa attcaaacgg       180
     aaattgaatc gataatagaa tgtgatgatc aggtggaggt ggaaatagaa gaaagatata       240
     taactgaaga attgatagta cagctacaag taaggttaca ggatttacgc cctacaacat       300
     ctatttctac accatactac gcaacaccta catctacata cgctcgaagc agtgaaacgg       360
     tagtaccgaa gataatgttt caaccattac aagaaaaaga aagttttata aattttacaa       420
     aagattagaa atgtttttgc ttttaaataa ttgccatgac aaccaaacca aaatgtacat       480
     gcttttaagt tctattcctc cagaactaca tcaaagagca tacgatctat gtgcaccaaa       540
     agaaccatct gatgtcggtt acgccgaact tattaaaatt ttagatgatt acttggaccc       600
     aaaaccaagc atgtgggcaa ctcaacacaa attcattaca aggacacaag aggagaatga       660
     atcgattata gaatatacag cacaattaaa acgtttagca caagattgtg attttaaatg       720
     caaacactgc aataaatcga ttgctgataa ttttatcaca cttcaatttg tccgaggtct       780
     taaagacaat gacgcacgtg ctaaaattct tcagagtacc gatgtaactg acttaccaaa       840
     tctcatacgt acagcaacag ctatagaaac agcaaagtgt gacagttctt acatatcaaa       900
     agctactcat ataagtcatc aaatgcaaca attaaataag aaaaccccat tcaaaagaca       960
     agttataaca gtaaaagaca taaaagggaa atgttttcgt tgcggaagtg aaggccacag      1020
     agctaataat tgtagatgta ttaacgatac atgttataaa tgtaaaagaa agggccattt      1080
     agctcgtgta tgtttacacc cgttcagggg caaccatttg gtccaatctg agcacgtgga      1140
     ggtgcatgct gaggatgtag cccaggatat gaacgaggag tcgattgtcg atgttggtat      1200
     accatggaac atgaacgtca ttagatcaat catcaacgac aaatatatga ttaagatcca      1260
     cattaacgac aaaattgttg agatggaggt agacacggga gcagctctat catcaatatc      1320
     ttataaagat tttaaggcat taaacctcga tacaaaaata ttcaaaactg acattatcat      1380
     gaaaacttat acaggagaat taatcaaacc ggtcggagta gtatacgtga catgcaaata      1440
     taaacagcaa tttttcagcg gaaagctata tattatcaaa caaaacgttg aacctatatt      1500
     tggtcgatca tggattagac ttacaaatct caatttagcc aatatcaaca atatacgatc      1560
     taatattgat acgaaacttg actcattatt ggctgaatat tcaaaggttt tcgatggaac      1620
     tcttggctgt atacctaact acaaggcaaa tttttcttta aaagagggag ctacaccaat      1680
     ttttattaaa ccaagacgta taccgtacgc tctaaaggaa aaggttgaca cggaaataga      1740
     tcgcttgtgt caacaaggag ttattacgaa aatagacaac tctgaatggg gaactcctgt      1800
     agttccgata gttaaaccaa atggaagtat acgtctatgc gccgactaca aagttacatt      1860
     aaataaggtc atcaaagacg accaataccc aataccgata attgaagaca tactcgtaga      1920
     aatgaatggt ggtgagatat tttgcacatt ggacgtcagc caggcgtacc tacacatgat      1980
     gatggatgag gagagcgcca tgatgcagac aataagtaca cataagggtt cattcaaagt      2040
     taaccgtttg atgtttggtg ttaaggtagc acctaacttg tggcaaaaat ttatggatcg      2100
     attgctgcaa ggattggcag gagtaaaatg tttttttgat gatatcataa ttcaaggatc      2160
     ttcagaaaat caactcttag caagactacg tcaagttctt caaaaattac aagaatataa      2220
     tttaaaatta aataaggaga aatgtcattt ttttaagaag agcattaact atttgggaca      2280
     tacgattgat aaaaatgggt tacataaaaa cagagacaaa gttaaagcaa ttctggacgc      2340
     cgaacgccct aaaaacattg acgaactcag aacattttta ggcatggcaa attattataa      2400
     taaattcata ccaaacttag cttcaatatc gaattccttg aattctttgc taaagaaagg      2460
     tacagaattc gattggacca tgagatgtca agagagtttc gacaagataa aaaagaaatt      2520
     atcagtgaaa gggtactaat gcacttcgat cccaataaac cagtagtact cgctacagat      2580
     gcatccccga caggacttgg cgccattctg tcacatagaa tgcctgacgg ctccgataga      2640
     ccaatcgcat tcgcatctcg ttcactcaca tcaagtgaaa agaaatacag ccaaattgac      2700
     aaggaagcga cgtctatctt ctggggactt aaaaagtttt tcaatttctg ttacggaagg      2760
     aagttcatat taattacaga tcataaaccg ctcactataa tatttcatcc ccataaaaca      2820
     ttaccggcaa tgagtactat gaggcttttt cactacgccc attttctatc tggttttgac      2880
     tatacgattg aatacagaac atcgagtggc aatagtaacg cagactactt atctcgattt      2940
     ccggtagata aaatagcctt gaatattatt gacgcttgta gcgtttttca gagaaaccaa      3000
     atgaacacca ttacaatcga ccgaaaaaag atagctgaag aaaccacgaa agacatggat      3060
     tatgatacac tgatgaaagc actgatgacg ggcacaagtg ttaaaagata tggttataat      3120
     gacaacgagc ttactgtgca agatgggtgt atactaaaag gtaccagggt tatgataccg      3180
     gctagtctga aaaacacagt actaaacgaa ctgcataaag gtcatttggg aattgttaaa      3240
     atgaaattac ttgcccgtag ttatgtttat tggaaaaata tagataaaga catagaaagt      3300
     ctagtaagtc aatgtcgtga atgccgatta aaccaaaacc aaccaacacc ggtacaagta      3360
     catcactggg aaaaaccatc tggtccgtgg cagaggatac atatcgattt tgcgggccct      3420
     gttaaaggat attccttatt tataatagtt gatgcataca gtaagtgggt ggagattata      3480
     ccgacgaagg ttaccattag ctcatggtgt ataaataaac tgaaggattt attcacaaca      3540
     tttggagtac cattcacctt agtatcggat aatggtcgac agtttgtatc aaatgaattt      3600
     gagtcattcc tgaagaatac gggagtcata cataaaacgt cagcacctta ccatccagct      3660
     actaacggac aggcagagag attcgtacag acgattaaaa aggcactgca tgctgcccgt      3720
     tttgggcctg gtacaataca tgagcagcta cgagacatta aggaacattt gctaaggacc      3780
     cctagcgtca gcagtggcaa gagcccatac gagctaatgt tcggtagaga agtacgcacc      3840
     gctctacatg tcaaattcag agggaaggta gcgagagaga cggcgagatc atattccgtt      3900
     gtaaccagga aattcgagat tggacgtaag gtgcagttta gggactacac aggccgtgac      3960
     aagtgggaat ttggcagaat cgagaaagtc ctaggtcacc tacactattt aatcagaaca      4020
     gagagtggcg aagtacacaa acgtcacgtg gaccagatcc tggacttacg ttctaaagaa      4080
     taagtaaaaa actatgttca tttgaggggg aggaaac                               4117
//
ID   Gypsy-9_MSe-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   28-DEC-2020 (Rel. 26.02, Created)
DT   28-DEC-2020 (Rel. 26.02, Last updated, Version 1)
XX
DE   LTR retrotransposon from the tobacco hornworm genome: long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_MSe-LTR.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-127
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the tobacco hornworm genome.";
RL   Repbase Reports 21(2), 878-878 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 127 BP; 48 A; 13 C; 17 G; 49 T; 0 other;
     tgttgtgttc gtggccactc tatggtcact aaaaagtaaa ttgtatgatt gacatttgtc        60
     attgtaataa aagaatatta tatgaaaatg tacatattat aatttcattt acaattaata       120
     cataata                                                                 127
//
ID   Gypsy-9_OrIn-I repbase;    DNA;    INV; 4145 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome -
DE   internal portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_OrIn-I.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-4145
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1550-1550 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..4126
FT                 /product="Gypsy-9_OrIn-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPRRKQSPPEENETVRETVRPRFAFSDLQDSMMSFSG
FT                 DDDYPVDRWIEQVDEMATLVSWTDLETLIFAKRLLKGTAALFLRGESGLKS
FT                 WQLLKKAISDEFKVKVSVAEVHKRLSRTKKLPDETCKKYFLRMREIANLSE
FT                 IDDESLIEHVINGLPGEESVKVILYGTDSIEKFKEKLDVFEKIGAKQKCKQ
FT                 REVPNPPNPKKADPNPPNPKKADAETYQNLRCFNCGDKGHRSKDCFNKVKG
FT                 PRCFNCREYGHLSANCPKKSAEDELKKCMIAKGGEGPIERKGGSEKTFTRP
FT                 NDVTSPLKTADVNYSGKPFLKIAIFDFSFSALVDTGSDINLIKFSAYDKIG
FT                 RPNLSMAANLIGLGNHSVVTIGVFSVDVSLNEREGQYLTKFYVVQDADLPV
FT                 DVILGQEFLKNVSILIQGNEIKFVDPIMTKPPHIFSIKVDEDAAILDVGLS
FT                 CHRNKIEKMVADYAPNKIKETNVKLKIILTDDTPVFQHPRRLPLNDLKEVE
FT                 AQIDEWLKNGIIEHSDSDFSSPVVPIKKKDGGLRLCVDYRALNRKIVKDRY
FT                 PVPLIQDQIDKLADARVFSVLDLKNGFFHVPIDEESRKFTAFVTPTGHYQF
FT                 LKTPFGLCNAPAVFVRFVNAIFKDLIFQDVVVTYFDDLLIPGIDEAQSLER
FT                 LRIVLKRCSEYGLEINWKKCRFLVKSVEYLGHLIEEGSVRPSPSKTRAVQN
FT                 FPSPKSIKDVQSFLGLTGYFRKFIANYAELARPLTDLVKGAPNKWKKFTFD
FT                 EKQKDAFNLLKDRLSSHPVLKLYDPRAETELHTDASKDGLAAVLMQKSHQD
FT                 GKMHPVFYMSHKTNDTEKRYSSYELEAMAVVTAVKKFQVYLAGLKFKIVTD
FT                 CAALQMTLQKKDLTPKVARWAMFLDEFDYTVEHRRGNQMKHCDALSRNLFV
FT                 TLPIGDNLIAKITELQHKDEGLRAIMEVLKTKNYKDYIVDGGVLYKDDRDK
FT                 DSRLLVVPRSMANDIIRRSHEVGHFGTKKTVELIERDYFIPNLKTKVENLI
FT                 KSCVPCILSERKRGKQEGFLNPIDKGDTPLAVYHIDHLGPLVSTPKGFKHV
FT                 FAVVDGFSKFVWLYPVKTTNASEVIEKLRVQKKNFGNPRKIISDRGAAFTS
FT                 NAFSDFCKIENIEHILTTTGVPRGNGQVERINSAIIPIITKFSLDKPESWF
FT                 KCVDRVQTALNATFQRSIKMSPFKLMFGTEMRRPDDIKLKELIEEAFLEDF
FT                 MEDRDELRDQAKRQIQIAQEEQRKTYNRRRKAATQYKAGDLVAIRRTQFKP
FT                 TAKISAKYLGPYKIVKKIGKDRYEVEKTTGGEGPSRTTTSADFVKPWSVGA
FT                 EEDDGDDSGDEEEEQTSSEADD"
XX
SQ   Sequence 4145 BP; 1340 A; 781 C; 956 G; 1068 T; 0 other;
     gtattttttg ggggtccgtc cgggatattt tgagcaggaa gtttttgtcg gttaaaaaaa        60
     tataaaaaac gcacttattt tttattcgtg attggaactg tgacgaaaaa gacttgtttt       120
     taaaatgccg cgtcgaaaac agagccctcc cgaggaaaat gagactgttc gtgagaccgt       180
     tcgtccaaga tttgcgttca gcgatcttca ggactccatg atgtcttttt ccggcgacga       240
     cgactatcca gttgaccgtt ggatagaaca ggtagacgaa atggcgacgt tggtgagttg       300
     gactgattta gaaactttaa tttttgcgaa acgtctctta aaaggaacgg ctgctttgtt       360
     tttacgaggc gaatctggct taaaatcatg gcagttactg aaaaaagcca tttccgatga       420
     atttaaagta aaagtatccg ttgccgaagt tcataagaga ttaagccgta ctaaaaaatt       480
     acccgacgag acttgtaaaa aatatttttt gaggatgcgc gaaattgcga atttaagcga       540
     aattgacgac gaatctttga tcgaacatgt tatcaatgga cttccgggcg aggaatccgt       600
     taaagtaatt ttatatggga ctgattccat tgagaaattt aaggaaaaat tagacgtttt       660
     tgagaaaatt ggcgccaaac aaaaatgtaa acagagggaa gttcccaacc cccctaaccc       720
     gaagaaagcc gaccccaacc cccctaaccc gaagaaagcc gacgcggaaa catatcaaaa       780
     cttgagatgt ttcaattgcg gggataaagg acataggtcg aaagactgtt ttaataaagt       840
     aaaaggcccg agatgcttta attgtagaga atatgggcat ctctcagcaa attgtcccaa       900
     aaaatcggcc gaagacgaat taaaaaaatg catgattgcg aagggcggcg agggtcccat       960
     tgagagaaag ggcggttccg agaagacatt cacccgcccg aacgacgtca cgtccccttt      1020
     gaagactgcc gacgtgaatt attccggtaa accattttta aagatcgcta tttttgattt      1080
     ttctttctct gcgcttgtgg atacgggttc agatattaac cttattaaat tttcggcgta      1140
     tgacaagatc ggacgaccta acctgtccat ggctgccaac ttaataggac tcggcaacca      1200
     ttctgttgtc acaattgggg tcttttcagt agacgtgagc ctcaatgagc gcgaaggtca      1260
     atatttgaca aaattttacg ttgtccaaga cgccgatttg ccagttgacg taattttggg      1320
     acaagaattt cttaagaacg tgtccatttt aatacaagga aatgaaataa aatttgtcga      1380
     tcccataatg acgaagcctc cacatatttt ctcgataaaa gttgatgaag acgcagcgat      1440
     tcttgacgtt ggactttctt gtcatagaaa taaaatagaa aaaatggtcg ccgattatgc      1500
     gccaaacaaa ataaaagaga caaatgtgaa gttgaaaata atattaaccg acgatacccc      1560
     agtatttcaa caccccagac gtttacctct caacgattta aaagaagtcg aagcgcaaat      1620
     tgacgagtgg ttaaaaaatg gcatcataga acatagcgat tcggattttt cgagtcccgt      1680
     ggtcccaatt aagaagaaag atggaggatt gagactttgc gtagactatc gagccttaaa      1740
     tagaaaaatc gtcaaagatc gttaccctgt acccttgatt caagaccaaa tcgataaatt      1800
     agcggacgcg cgagttttta gcgtacttga tttgaaaaat ggattctttc atgtaccaat      1860
     cgatgaagaa agtcgaaaat ttaccgcatt tgtgacgcct acaggacatt atcagtttct      1920
     taaaacacct tttggactct gtaatgcacc cgccgtattt gtgagatttg tgaatgcgat      1980
     ttttaaggat ctgattttcc aagatgtcgt tgttacctat tttgatgatc ttctgatacc      2040
     cggaattgac gaagcccaat ctttagaacg acttcgaatt gtgcttaagc gatgctctga      2100
     atatggcttg gaaatcaatt ggaaaaaatg tcgatttctc gttaaatcag tggagtatct      2160
     cggccatttg atagaagaag gttcagtacg accttccccg agtaaaacgc gcgccgtaca      2220
     gaattttccg tcccctaaat ctattaaaga cgtccaaagt tttttaggtc tgacgggata      2280
     tttccgaaaa tttatagcta actacgcaga attggcgagg ccattgaccg atttagtcaa      2340
     aggagcccct aataagtgga agaaatttac atttgacgaa aagcaaaaag acgcattcaa      2400
     tcttctgaag gaccgattat ctagccatcc ggttctgaaa ctttacgatc ctcgagcaga      2460
     gacggaattg catacagacg cgagtaaaga tggtctggct gctgtcttaa tgcagaagag      2520
     ccatcaagac ggaaaaatgc atccagtttt ctacatgagc cataagacga acgatacaga      2580
     gaagagatat tcgagttacg agctagaggc tatggctgtt gtaactgcag taaagaagtt      2640
     tcaagtttat ttagcgggct tgaaatttaa gatcgtgacg gattgtgctg cgctgcagat      2700
     gacgcttcaa aagaaagatc tgacgccaaa agttgcacgt tgggcgatgt ttcttgacga      2760
     gttcgactac acagtagagc atcgacgagg aaatcaaatg aagcattgcg atgccttaag      2820
     tagaaaccta tttgtgactt tgccgattgg agataacctc attgcgaaaa taaccgagct      2880
     tcaacataaa gacgaaggac ttcgagctat aatggaagta ttgaagacga aaaactataa      2940
     agactacatc gtcgacggag gagttcttta caaagacgat agagacaaag attcacgact      3000
     tctagttgtt ccgcggagta tggcgaatga catcattaga cgctcacacg aagttgggca      3060
     ttttggaacc aagaaaacgg tagaattgat cgaaagagac tatttcattc ctaaccttaa      3120
     gacgaaagtg gaaaatttga ttaagagttg tgtgccgtgt attttgtcgg aaagaaaaag      3180
     aggcaagcaa gaaggatttt tgaatccgat tgataagggt gatacgccct tagcggttta      3240
     tcacattgac catttgggac cgctagtctc cacgcccaaa ggtttcaaac acgttttcgc      3300
     cgtggtcgac ggtttctcaa aatttgtttg gctataccca gtaaaaacga cgaatgcttc      3360
     ggaggtaata gaaaaactac gtgtacagaa aaagaacttt ggaaatccac gaaaaatcat      3420
     atctgatcga ggtgctgcat tcacttccaa tgctttcagc gatttttgta agatcgagaa      3480
     tatcgagcat attttgacga caaccggagt gccacgagga aacggtcagg tggaaaggat      3540
     taactcagcg attatcccga ttattacgaa gttcagcttg gataaaccag aatcatggtt      3600
     taaatgcgtc gaccgagtgc agacagcgct aaatgctacg tttcaacgaa gtatcaagat      3660
     gtctccattt aagctaatgt tcggaactga aatgagacgg ccagacgata tcaagttgaa      3720
     ggaacttatc gaagaagcgt tcttagagga tttcatggaa gatcgagacg agttacgaga      3780
     tcaagcgaag agacaaattc agattgcaca ggaagaacaa agaaagacgt ataatcgacg      3840
     gcgtaaagca gctacacagt acaaagcggg agatctagtt gctattcgac gaactcagtt      3900
     caaaccgact gcaaaaatct cggcgaaata ccttggtccc tataaaatag tcaagaaaat      3960
     tggtaaggac agatacgaag tggagaagac gactggagga gaaggtcctt cgcgtacgac      4020
     aacgagcgct gattttgtga agccttggag cgttggtgct gaagaagacg atggcgatga      4080
     cagcggagac gaagaagaag agcagacatc atctgaggca gatgattagg tagcgcggcc      4140
     gaatc                                                                  4145
//
ID   Gypsy-9_OrIn-LTR repbase;    DNA;    INV; 278 BP.
XX
AC   .
XX
DT   14-JAN-2021 (Rel. 26.03, Created)
DT   14-JAN-2021 (Rel. 26.03, Last updated, Version 2)
XX
DE   LTR retrotransposon from the insidious flower bug genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_OrIn-LTR.
XX
OS   Orius insidiosus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Anthocoridae; Anthocorinae; Orius.
XX
RN   [1]
RP   1-278
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the insidious flower bug genome.";
RL   Repbase Reports 21(3), 1579-1579 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 278 BP; 68 A; 50 C; 66 G; 94 T; 0 other;
     tgtgggaaat ttgtggtcga gtagtgaagt tgtcacaact ggccgaaccc gcgcgcgcta        60
     gtgtcgagtg tcgagtgaga actaaaagca cgtggactta cgacgtgaaa gtgaatgtgc       120
     gacgaatatt tgacggttct gtttcttttc attttctttg tagttttctc ttgtgaattg       180
     tgacgatgat ttcttgtttt aataataaaa aaagagctgt gagtcctttt gatttgtttt       240
     gcccggcaat tgctcttcca acctcaaata atcccaca                               278
//
ID   Gypsy-9_OsLi-I repbase;    DNA;    INV; 4878 BP.
XX
AC   .
XX
DT   26-MAR-2021 (Rel. 26.04, Created)
DT   26-MAR-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_OsLi-I.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-4878
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2031-2031 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..4018
FT                 /product="Gypsy-9_OsLi-I_1p"
FT                 /note="gag, retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MPSEPGTSVPPSFDELFRRFMETVASGAVSTVTSATS
FT                 NKATADAIPEFSGTDLGEDANQWCDIVEKITDKLPISQRLSLATHALHGAA
FT                 KKWYKGWEGNPRTWTTFREDLCSVFVSEDRLCERLSCAVNYNSDSAISYSE
FT                 YVRNKLKYYGQTQISFKPHELISLVIGHVTDPSVRQSLMNARYTTTADLLS
FT                 GISNFVKVPRKEKNSDSKGAVYKRRDQILRRRCYQCNETGHLQHDCPRKRK
FT                 AESLPKDPVKRTNVPTCTFCSKRGHEESECWLKRRTPREDKGAKKTNSRHG
FT                 ELEANACFRLDHQLTPIILQDMVVRSCLVDNGATCSLVKEQVAKRAHCKID
FT                 PYITIVRGLCDSAVTTVGQTTAVIQTEEVTAELDLLVVSEDTMTYDVIIGK
FT                 NIVTQGIQILTNSEGETKLQRCSLVPQGIQEDSTPQCFTCDVGDVGVRGEV
FT                 EKLLDRYNHMITSGNKVRCVSTSELKIKLKEDKVINYHPYRLSISEREKVR
FT                 EIIDDLLANNIIRESASPFASPIILVKKKNGKDRMCVDFRALNRITVKDRY
FT                 PLPLIEDQLDRLGRGKYYTILDMTSGFYQISIAEDSIEKTAFVTPDGHYEF
FT                 LRMPFGLANAPAVFQRAINTALGTLRNKIALVYIDDVLIPSRTIEEGLKYL
FT                 EIVLQALDTAGFSINIEKCKFFQKTIEYLGREVSAEGIRPGKDKVRALLES
FT                 PVPCNIKQVRQFVGLASYFRKFVPEFAVRTACITKLTKKNEQWHWAEEQEK
FT                 ARHYILEKLSSNPLLVIFNPERETELHTDASAIGYGAILFQKVDGDSRVVA
FT                 YFSRRTTPEESRYHSYELETLAIVNALRHFRVYLLGIKFKIITDCNAIKAT
FT                 STKKDLLPRVARWWIFLQDFNFEIEYRKGKYVEHVDYLSRNPPKDYRVNTI
FT                 CEGSWLEVAQRKDEETKSIIERIETNDTVSSDFEVRQGILCRKIQRESGQT
FT                 VYRSFVPKGSRIGLLRLYHDENCHVGPEKTYDRIMQKYWFPKMRKFVNKYI
FT                 EHCITCIVSKRHTGPKQGLLHSINKKAIPFYMIHCDCVGPFERSKDGYQHI
FT                 LVIVDAFTKYVQLVPLKSLSGPEMLQVFKERLTLFGTPRVVVMDRATNFTF
FT                 KPLVQFIKKHGIDLHFIATGAPRANGQAERYVSTVINLLTAEINKISEWPN
FT                 KLAKLMISLNTTVQKTTGFSPYRLLFGVERSTATADPAETELPDTNDPIDV
FT                 IKDRELASERLTENAQKQNNSRFDKKRRVNVVYKEGDTVFVKPADLRRAKL
FT                 ELKYVGPFVVSKILANDRYEIVGKTGRPQTVPKDRLRLWKGEWSGDTDTNE
FT                 GLNDESDSGDEPC"
XX
SQ   Sequence 4878 BP; 1529 A; 907 C; 1170 G; 1272 T; 0 other;
     tcagaagtgg gatacgttca gttttactaa actcacgttg acaatgccga gtgaaccagg        60
     cacgtctgtt ccgccgtcct ttgatgaact tttccgccgc tttatggaaa cggtcgcgtc       120
     cggtgcggta tcgactgtta cgtccgcgac gagtaataaa gcaaccgcgg atgccatacc       180
     agagttcagc ggtaccgatc ttggtgaaga cgcgaaccag tggtgtgaca tcgtcgaaaa       240
     aatcactgat aaacttccta tttcgcaaag actaagtttg gccacccatg cgttgcatgg       300
     tgctgccaaa aagtggtata agggatggga aggaaatcca agaacgtgga caacgttccg       360
     cgaggattta tgttcagtgt ttgtgtcgga ggaccgattg tgcgaaagac tatcatgtgc       420
     tgtgaattac aatagcgatt ccgcaatttc atactctgag tacgttcgaa ataagctaaa       480
     atactatgga caaacgcaaa tatcttttaa accgcacgag ttgattagtc ttgtgatagg       540
     ccacgtgact gaccctagtg tgcgccaatc gcttatgaat gcacggtata caacaactgc       600
     ggatttgctc agtggcatat caaactttgt aaaagtgccg cgaaaagaaa agaacagtga       660
     tagtaaaggt gcagtgtata agcgtcgtga tcagatccta cgaagacgct gttatcagtg       720
     caatgagaca ggacacttac agcacgactg cccgaggaaa cggaaagcag aaagcttgcc       780
     aaaggacccc gttaaaagga ccaatgtacc tacatgcact ttctgctcca agagagggca       840
     tgaggagtcc gaatgttggt tgaagcggag aacgcctcgt gaggacaagg gtgccaaaaa       900
     gacaaacagt cgtcacgggg aacttgaagc caacgcctgc tttagattag atcaccaatt       960
     gacccctatc atcttacaag atatggtcgt acgaagttgt ctcgtagata atggcgcgac      1020
     ctgttcactt gtcaaggaac aggtggctaa acgtgctcat tgtaagattg acccctacat      1080
     aacgatcgta agagggttat gtgattccgc tgtgaccacc gtcggccaaa caaccgctgt      1140
     gatccagacc gaagaagtga ccgctgaact cgatctcctc gtggtttctg aagacactat      1200
     gacctatgat gtcataattg ggaaaaacat tgtgacgcag ggcatccaaa ttttaacaaa      1260
     ttccgaaggg gagacgaaat tacaacggtg ttcgctggtc ccgcaaggaa ttcaagaaga      1320
     ctcaacaccg cagtgtttca cctgtgatgt cggcgacgtt ggggtacgcg gagaagtgga      1380
     aaagctgcta gaccgataca accatatgat tacgtcaggc aacaaagtac gatgcgtgag      1440
     tacaagcgaa ttaaaaatca aactcaagga agacaaggta attaattatc acccttaccg      1500
     tttgtctatt tctgagcgcg aaaaggtacg agagataatt gacgatttat tagcgaataa      1560
     tataatacgc gaaagtgctt cgccgtttgc aagccctata atccttgtaa agaaaaagaa      1620
     tggtaaagac cgcatgtgtg tcgatttccg tgcccttaat agaattaccg tcaaggatcg      1680
     gtacccatta cctttgatag aagaccagct tgatcgtttg ggccggggaa aatattacac      1740
     aatattagat atgacatctg gcttttacca gatttctatt gccgaagatt ccatagaaaa      1800
     gacggccttt gtgactccag atggtcacta cgaatttcta cgaatgccat ttgggctggc      1860
     caacgcaccc gccgtctttc agagagccat aaacacagct ttaggaactt tacgaaataa      1920
     gatagcttta gtgtacattg acgacgttct tattccgtcg cgaacaatag aggaaggatt      1980
     aaaataccta gaaatagtat tgcaagcact tgataccgcg gggttctcta taaacatcga      2040
     gaaatgtaaa tttttccaaa agacgattga atatctgggt agggaagtct ctgctgaggg      2100
     tattaggcca gggaaagaca aggttcgagc tttgttagag tcgcccgtac catgcaacat      2160
     aaaacaagtt aggcaatttg tgggtttagc tagctatttc cgaaagtttg ttcctgaatt      2220
     cgctgtacga acggcatgta ttactaagct gacaaagaaa aacgaacaat ggcattgggc      2280
     tgaagaacaa gagaaggcac ggcattacat tctcgagaaa ttaagttcga atcctctgct      2340
     cgtaatcttt aaccccgaaa gagaaacgga attgcacacg gatgcaagtg caatcggtta      2400
     tggggccata ctttttcaaa aggtagacgg tgattcaagg gtagtagcat attttagccg      2460
     acgtacaaca ccggaggagt ctcgttatca ctcctatgag ttggagacgc ttgcaattgt      2520
     aaacgcgctg aggcacttcc gcgtatatct gttgggcatt aaattcaaaa tcataacgga      2580
     ttgtaatgct ataaaagcta cgagtacaaa aaaggatttg ttaccgcgtg ttgcaagatg      2640
     gtggatcttt ttgcaagatt ttaattttga aatagaatac cgtaaaggga aatatgtaga      2700
     acacgtggac tatttaagcc gaaatccgcc taaagactac cgtgttaaca ctatttgtga      2760
     aggctcatgg ttagaagtcg ctcagcgaaa agatgaggaa acaaaatcta ttatagaacg      2820
     tatagaaacg aacgatactg tgagtagcga tttcgaagtt cgacaaggta ttttgtgtag      2880
     aaaaatacaa agagaatccg ggcaaacagt atatcgtagt tttgtcccaa aaggcagtag      2940
     aatcggttta ttgcgtttat accatgacga aaattgtcat gtaggtcctg aaaaaacgta      3000
     cgatcgtata atgcagaaat attggtttcc aaagatgcgc aagtttgtaa ataagtacat      3060
     tgaacactgt attacttgta ttgtatcgaa acggcacaca ggtccgaagc aaggactgtt      3120
     gcattcaatt aacaaaaaag caataccctt ttatatgata cactgtgatt gtgtaggacc      3180
     atttgaacgg tcgaaagacg gataccaaca tattctagtc atcgtagatg cttttacaaa      3240
     atatgtgcaa ctcgttccat taaaatcatt atccggtcca gaaatgctac aagtatttaa      3300
     agaacgctta acgttatttg gtacacctag agtcgttgta atggatcgag caactaactt      3360
     tacattcaaa ccattggttc aatttattaa gaaacatgga attgacttgc actttattgc      3420
     tacaggagca cctcgtgcta acgggcaggc cgaacggtat gtttcgacgg taataaactt      3480
     gcttaccgcg gaaataaata aaatttcaga atggccgaac aaattagcta aattaatgat      3540
     ttctttgaat acaaccgttc agaaaacaac agggttctct ccgtatcgtt tattgtttgg      3600
     cgtagagcga agcacggcta ccgccgatcc tgccgaaact gaattgccgg atacgaatga      3660
     tccaattgac gttattaaag atagagaatt agcatcagaa aggttgaccg aaaatgctca      3720
     aaaacagaat aatagtagat tcgataagaa gcgcagagta aacgtagttt ataaagaggg      3780
     tgatacggtt tttgtaaaac cagccgattt aagacgtgcg aaattggaac ttaagtatgt      3840
     agggccattt gtagtatcca aaattttagc taatgaccga tacgagatag ttggaaaaac      3900
     cggaagaccg caaacggtgc ccaaggaccg tctgagatta tggaaaggcg agtggtcagg      3960
     tgataccgat acgaatgaag gtttaaatga cgagagcgac agtggagatg agccgtgtta      4020
     gcggattata taatgtgcgg cgttctattg gtcgtattat ttttgtatta ctgttttaca      4080
     ggcaattaaa agtaacgtac atataatttg tctctgattt attgctgcta tgcagttgaa      4140
     cggttatcaa cctgtccgtc atgttacagt atgaatatgt ttgagaataa cgtatgaaag      4200
     acgacaatat cgtgtacaga atagagcaac gttgtggatt cgaaggagac ctctatcatg      4260
     ggtgacaata aaaccacaga cttgatatgt tatccttcga aagacaacgt ttgaacggta      4320
     caagaattgc gcggaataga gaacgttata atctcgatga aacagtggat tgtgtgcgga      4380
     atagagtaac gctaggggtt cgaagtaaaa ctacactttg ggtgacatac ggtcacggac      4440
     ttggtgaagt atttgaagga cggcgtttga aaggtacaca attcaggcta aagaggagac      4500
     gttacggtct cgaaaaaaaa aaaaaaaaaa atgttgcagt tcgaatttgt taagcaagat      4560
     gcttgtaagt atcgttgctg tggaacgcta tgacgtttgg tgctgtgtgc acgtctgata      4620
     tggctgtgtg cctgtgaata tgcggtgaca ctgataagtg ttgtccgttg gtgtggcgta      4680
     cttgcgagta tcgttacaat atgacatgtt tgggagaatt atctaaattg ggaattgttc      4740
     ttcctttcgt gctgtgaaaa cgaagggcct tgctactgga attgaaggtt gttggatgaa      4800
     atacgactcc agggatatct tgagttaagt gatgggtaag gatgcttctc gagagcgcga      4860
     agcaggtcag tttggccg                                                    4878
//
ID   Gypsy-9_OsLi-LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the orchard mason bee genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_OsLi-LTR.
XX
OS   Osmia lignaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia.
XX
RN   [1]
RP   1-430
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the orchard mason bee genome.";
RL   Repbase Reports 21(4), 2019-2019 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 430 BP; 104 A; 90 C; 126 G; 110 T; 0 other;
     tgttagcgtc agcacgtgtt caagggttga cacgtgtcag ggtcaatgca ttttgggctt        60
     tgacctgagt ttcaaggatt tcttaggatt ctttagacta tcgatacccc gagccatatg       120
     tctgtcatcg gacttaggcc ggcggtagtt gatacttgag gtgcgacgaa ttctaagagt       180
     cgcggatgtt ttgtttatgg aacggcgata gagagttcga tcgccgatcc tcgaaggaac       240
     gcgcggctgt ggccgatgac ccgaagtcat ggtgctgcat ggcacgtgta aaaagataag       300
     ggtgttctag aaggatctgg ccacagagtg gggaagatct tgcatcttct ggtaggagga       360
     ccatgaggaa cggcatggca cttatcccag aaccgtgatc gaacacgcct cgcgaacatt       420
     atatctaaca                                                              430
//
ID   Gypsy-9_PBa-I repbase;    DNA;    INV; 9980 BP.
XX
AC   .
XX
DT   10-MAY-2012 (Rel. 19.03, Created)
DT   10-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PBa-I.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-9980
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 687-687 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..1396
FT                 /product="Gypsy-9_PBa-I_1p"
FT                 /translation="MKGSGQTTSRNTMENSGETDMNELRRLIGEQQRTIQQ
FT                 LQQQQRSQAINLSSEGTISNFLQFSIRDALEAVPNFDGENIPFVYFVEGCE
FT                 EALSMVAPTQEVILVRAIRNKLKGDAHRSILGKIFENMQELIEFLRAKYGP
FT                 RETVYEAQGRLAYLYQKRDEKVAAYANRVRELGKRILDAQKRETGILSSEF
FT                 RNSIEKHLKTSFLRGLNREIIISKEGTFEEVEARAIDAEKELETVNMIRRV
FT                 VLAENAPAERRASTRRIEAEIITCQFCRKVGHTADRCWLINKNQNQNRLGF
FT                 SQNTRKNNNYLNNNNYNKNNNRVQPPLPRFQSSWNNQNSITCRYCKKLGHT
FT                 IEECRKRIFNNNNNNNNNGTRNNSYNNNLNNNRNNNNGNNFRQNLQAQGNG
FT                 QIPERNGAAPGKTNVRPARKINAQIESNAEQ"
FT   CDS           1276..5772
FT                 /product="Gypsy-9_PBa-I_2p"
FT                 /translation="TKFTSSGKRADSREERGSPGKNQCPPRTENQRSNRIK
FT                 CRTINLAYIEEVPTVKLESLNFKETLNFLVDSGSGPNIIKRSIITPDTFVD
FT                 RNEILKLSGITTHHVTTLGLALIDILGCPVSFHLVEDDFPIPQHGILGSDF
FT                 FKQFQVNVNYQENQLEWNGIIIPFALKEEQEEEFTIPARSISQMHIRVANS
FT                 ELKEGYVPRLIVTDGIYLGDALVTVRDGKAYLQVINTNEEEERVLIPTIEI
FT                 YEFETNDKEISNSTNSNSNSKSSSNENLNTSSNSRSCFPINQNERKNKIID
FT                 ALRLEHLNNEEREHVERLIKKSADCFHLPGENLNHTNVLKHRIPTVNEIPI
FT                 NTKQYRFPVIHKDEINRQVNELLEQNIIKPSKSPYNTPVWIVPKKSDSKGN
FT                 KRWRMVLDFRDLNDKTIGDAYPLPNITEILDQLGGAKYFSVFDLASGFHQI
FT                 KMHPDDSHKTAFSTPHGHYEFDRMPFGLKNAPATFQRLMDLVLTGMQGSEI
FT                 FVYLDDIVLYASSLTEHAIKFEKLISRLREANLKLQPDKCEFLRREVTYLG
FT                 HIIGENGVRPDPKKIEAVQNFPIPKNAKNIKQFLGLAGYYRRFIKGFSKIA
FT                 KPLTNLLKKEIEFKWGDKEQECFNTLRNALCEEPILQYPDFTKPFLLTTDA
FT                 SGTAIGAILSQGQIGKDQPISYASRVLNDAEKNYSTIEKELLAIVYAVQHF
FT                 RPYIYGKKFFLITDHKPLTWLHKLKDPTSRLARWRIKLAEYDYEIIYKPGK
FT                 INANADALSRNPTANIYPIQPQYDEIEECSEDEEARYRNANPRSLPSSPRR
FT                 GTMMEEPEPLVLGMXTRNTEKSEGESVPFTKKELNEPLFYEHTFQAEIHNN
FT                 PLEETDETDYTENLFNNSTENNIQQNSTLESEISNYEDAENYDESNSQNHN
FT                 NSNSQIEIPPKLLQILDNLTGNNSEINQGEVQENLMPESENEEKNCPKNQI
FT                 FIDDYIEEKDIEEDNEEKFDEDEDNDSEQDIDETYNEMTFDEISDTTERQI
FT                 MTRGQKQSIINSRDKIFMQKENYLYLLTADGKPCDDGSKALQSRNLIPKIK
FT                 EGKIGNIEIVKKGNKFHLIFICKNNINEKITKETLHCLTIKLRKAIKENSI
FT                 KILNIAKTQEIDNIKWEEILNRIRESIIGIPVKLIICHGLVRIPEVENRKN
FT                 IIEEAHSSKIGGHKGVTKTYNRIRQNFYWDNLKTEIRNYINQCLQCQIKKL
FT                 VRVKTKQPMLITDTPFSSFEKISMDIVGPLPETSKGNSYILTIQDHLTKFS
FT                 LAIPLKSITAVKVADALLKYFICIFGAPKAILTDQGTNFMSNLMKRFTKQF
FT                 RIKQFKTTSFYPQANGALERSHLVLIEYLKQYVNKFTEWDELLEYATFSYN
FT                 TSTHESTGYTPYELVFGKIARQPSSEIINDTEKGKTYDDYLCKLMTNIHNL
FT                 QELARECLIASKIKSKHYYDRKINPQEFQVNDQVFLLCEPRKGKLGDQYSG
FT                 SHIITDILSNGNIKILFKGKPKIVHPNKIRKTKK"
FT   CDS           5854..7434
FT                 /product="Gypsy-9_PBa-I_3p"
FT                 /translation="MKAKIFLLILIQNILVEENYGIIGFDCGTSNLNVTTL
FT                 SLLETEECNIPLIEPQIQETKIQLLQLSKFESINIIQCKISILRTIYYCGM
FT                 YSHISTVQNAQAEYIIDTTFDQCKNMHKTGTLTVNINNIINGLKVNYTTSR
FT                 PIIFAGSVTTDGKCFGTQYSDPYGTWQDVVVQGIMTISLFSYQAIINIETN
FT                 QIHLKTGTICQYSDGNCIDIEGRYTFWETIPTNFCKFNYYDVLYEGKANKM
FT                 ISNINEKLQIIYSLSTQDITFALTQTGEEFLCGYTLIKTEHPKLLILEIKN
FT                 EGTFIQKRKLSVENLDIFAYVNSKFVYVERHIRTQMNHLYTDVLKQRCNLE
FT                 QQIMKNALSIATHSPDDFAYQIMKGPGYMAAISGEVVHIIKCTPVEVKIYH
FT                 TKECYQQLPVLKGNETYFLAPRTHILFKTGTQITCSRIIPTMYYLNDGWYK
FT                 ITPILEYSKSPLKLTPMTKPTWQYNDPGSLAASGIYTNSELENLRDHIMFP
FT                 AEKNGILNTMASWCNRRTDLISRNITXSSSR"
XX
SQ   Sequence 9980 BP; 4297 A; 1494 C; 1542 G; 2645 T; 2 other;
     tgtaaaaaat ttttggtgac agcggtggga tactaaaacg gtttgtggaa agaaacaata        60
     gtggacagtg aaaaagtgaa cataaaaaaa taaataaata aaaaataata aattaaagaa       120
     catgaaggga tctggtcaaa caacatcaag aaacaccatg gaaaactcag gggagacaga       180
     catgaatgaa ttacggaggc taattgggga gcaacaacga acgatacaac agcttcagca       240
     acagcaacga agtcaagcca ttaatttatc atcggaagga acgataagta actttttaca       300
     attttcgatc agagacgcgt tagaagcggt gcctaatttc gatggagaaa atattccgtt       360
     tgtttacttc gtcgagggtt gcgaagaagc attaagtatg gtcgcaccca cgcaagaagt       420
     aattctagtt cgggcaatac gtaataaatt aaaaggggat gctcacagat caatattggg       480
     aaaaatcttt gaaaacatgc aagaactaat tgaattttta agagcaaaat acgggccgcg       540
     agaaacagtt tatgaagcgc aaggacgatt agcttatcta tatcaaaaga gggacgagaa       600
     ggtcgcagca tatgcaaatc gagttaggga attaggaaag cgaattcttg atgcacaaaa       660
     aagagaaacc ggaatattaa gttcggaatt tcgaaattca attgagaaac atttaaaaac       720
     aagcttctta cgcggattaa atagagaaat aataatatca aaagaaggaa catttgaaga       780
     agtagaggca cgggcaattg acgcggagaa agaattagaa actgtaaaca tgataagacg       840
     tgtagtactc gcagagaacg cgccggctga aagacgagct tcgacccgtc gcattgaagc       900
     tgaaataata acatgccaat tttgtcgaaa agtaggtcat acagctgatc gttgttggtt       960
     gattaataaa aatcaaaatc aaaatagatt gggattttcc caaaatacac gaaagaataa      1020
     taattattta aataacaata attataataa aaacaacaat cgagtacaac ccccacttcc      1080
     acgatttcaa tcaagttgga ataatcaaaa ttcgataact tgcagatatt gtaaaaaatt      1140
     agggcacact attgaggaat gtcggaaaag aatttttaat aataataata ataacaataa      1200
     caacggcact cgtaataata gctataataa taatttgaac aacaatcgaa ataacaacaa      1260
     tggaaataat tttagacaaa atttacaagc tcagggaaac gggcagattc ccgagaggaa      1320
     cggggcagcc ccgggaaaaa ccaatgtccg ccccgcacgg aaaatcaacg ctcaaatcga      1380
     atcaaatgca gaacaataaa tttagcctat attgaggagg taccaacagt gaaattagaa      1440
     agcttaaatt ttaaagaaac tctaaatttc cttgtagaca gtggatcagg gccgaatata      1500
     attaaaagaa gtattataac accagatact ttcgtggaca ggaatgaaat tttgaaacta      1560
     agtggaatta caacgcatca cgtgaccacc ttagggctgg cactgataga tatcttagga      1620
     tgtccagttt cttttcattt ggtggaagat gattttccaa taccacaaca tgggattctg      1680
     ggttcagact tcttcaaaca atttcaagta aatgttaatt accaagaaaa tcaattagaa      1740
     tggaacggta ttattatacc ttttgcatta aaagaagaac aagaagaaga atttacaatt      1800
     cctgctagat ctatttcaca aatgcatatt agagtcgcga attcagaatt aaaagaagga      1860
     tatgtcccgc gattaattgt aacagacggt atctacttag gtgatgcttt agttacagtt      1920
     agagacggca aagcttatct acaagtaata aatacaaatg aagaagaaga aagggtatta      1980
     attcccacaa ttgaaatata tgaatttgaa acaaatgata aagaaatctc aaactcgacg      2040
     aactcgaatt caaactcaaa gtcaagttca aatgaaaatc ttaatacaag ctcgaattca      2100
     agatcatgtt tccctataaa tcaaaatgaa agaaagaata aaataattga tgcattaaga      2160
     cttgagcatt taaataatga agagcgtgaa catgttgaaa gattaataaa gaaaagtgcc      2220
     gattgttttc atttgcccgg tgaaaatctt aatcatacaa atgttttaaa acatcgaatt      2280
     ccaacagtaa atgagattcc aataaacact aagcaataca gatttccagt aattcataaa      2340
     gatgaaatta acagacaagt aaatgaatta ttagaacaaa atataattaa accatcaaaa      2400
     tcaccttata atacgcctgt gtggatagtc cctaagaagt cggactcgaa aggaaacaag      2460
     agatggagaa tggtgttaga tttccgtgac ctaaatgata agacaatagg tgacgcgtat      2520
     ccacttccaa acataacaga aatacttgat cagctgggtg gtgcaaaata tttttctgta      2580
     ttcgaccttg cttcaggttt tcatcaaatc aaaatgcatc cggatgatag tcataaaaca      2640
     gcattttcta ccccccatgg tcattatgaa tttgatagaa tgccttttgg acttaaaaat      2700
     gcgcctgcca catttcaaag attaatggat ttagttttga cgggaatgca aggaagcgaa      2760
     atttttgtat acctagatga catagtatta tatgctagtt cattaacaga acacgcaatt      2820
     aaatttgaga aattaatttc acgattaaga gaagcaaatt taaaattaca accagacaaa      2880
     tgtgaatttt taagaagaga agtaacttat ttaggacata taattggaga aaacggagtc      2940
     cgacctgatc ctaaaaagat tgaagcagtt caaaattttc caattcccaa aaatgcaaaa      3000
     aatattaaac aatttcttgg attagctggg tattatcgaa gatttattaa aggattttca      3060
     aaaatagcta aaccgctaac taatttacta aaaaaggaaa tagagtttaa atggggagat      3120
     aaagaacaag aatgttttaa tacattaaga aatgcattat gtgaagaacc gatattacaa      3180
     tatcctgatt ttacaaaacc ttttctctta actactgacg cttctggaac agcaataggt      3240
     gcaattttaa gtcagggtca gattggaaaa gatcaaccaa ttagttatgc ttcgcgtgta      3300
     ttaaatgatg cagagaaaaa ttattcgact atagaaaaag aattattagc aattgtatat      3360
     gctgttcaac attttcgacc ttatatttat ggtaaaaaat ttttcttaat aaccgatcat      3420
     aaaccattaa cttggcttca taaattgaaa gatccaactt ctcgcttagc aagatggaga      3480
     ataaaattgg ccgaatatga ttatgaaata atatataaac caggaaaaat taacgctaat      3540
     gccgatgctt tatctagaaa tcctacagca aatatatatc caatacaacc tcagtacgat      3600
     gagatagaag aatgttcaga agatgaggaa gctagataca gaaatgcaaa tccaagatct      3660
     ttaccatctt caccaagaag aggaacaatg atggaagaac cagagccatt agttttaggg      3720
     atgmagacgc gtaatacaga aaagtcagaa ggagaaagtg taccatttac taaaaaagaa      3780
     ttaaatgaac ctttatttta tgaacataca tttcaggcag aaatacataa taatccacta      3840
     gaagaaacag acgaaactga ttacacagaa aatttattta ataacagcac agaaaataat      3900
     atacaacaaa actcaacact agagtcagaa atttcaaatt acgaagatgc agaaaattat      3960
     gatgaatcaa attcacaaaa tcataataat tcaaattcac aaatagaaat accaccaaaa      4020
     cttttacaaa ttcttgataa cttaacagga aacaatagtg aaattaatca aggagaagtt      4080
     caagaaaatt tgatgccaga aagcgaaaat gaagaaaaaa attgtccaaa gaaccaaatt      4140
     ttcattgacg actacattga agaaaaagat attgaagaag acaatgaaga aaaatttgac      4200
     gaagacgaag acaatgacag cgaacaagac atagacgaaa cttacaatga aatgactttt      4260
     gacgaaataa gtgacacaac tgaaagacag ataatgacac gcggacaaaa gcaaagtata      4320
     ataaacagtc gtgacaaaat ttttatgcaa aaagaaaatt atttgtacct tttaactgca      4380
     gacggtaaac cttgtgatga cggatcaaaa gcattacaaa gtagaaattt aattcctaaa      4440
     attaaagaag gaaaaatagg aaatattgaa atagtaaaga aaggaaataa atttcatcta      4500
     atttttattt gcaaaaataa tattaatgaa aagataacta aggaaacatt gcattgttta      4560
     actattaaat tacgaaaagc aattaaggaa aattcaatta aaattttaaa tattgcaaaa      4620
     acacaagaaa ttgataatat aaaatgggaa gaaatcttaa atcgaattcg agaatccatt      4680
     ataggaattc cagttaaatt aataatttgt cacggtctag tcagaattcc agaagttgaa      4740
     aatcgaaaaa atataataga agaagctcat tcatcaaaaa ttggaggcca taaaggagta      4800
     actaaaacat ataatcgaat taggcaaaat ttttattggg ataatttaaa gactgaaatt      4860
     cgaaattata taaatcaatg tttacaatgt caaataaaaa agttagttcg agtcaaaacc      4920
     aaacaaccta tgttaataac tgacacaccc ttttcttcat ttgaaaaaat atcaatggac      4980
     atagtcggac ctttaccaga aacatcgaaa ggaaattcct acatcctaac aatccaagat      5040
     cacttaacca aattttccct agcaatacct ttaaaatcaa taactgccgt aaaagtcgct      5100
     gacgcattat taaaatattt tatttgtatt tttggagccc ctaaggctat attaacagat      5160
     caaggaacga attttatgag taacttaatg aaaagattta caaaacaatt tcgaattaaa      5220
     caatttaaaa caacatcctt ttatccacaa gccaatggag ctttggaaag atctcattta      5280
     gtattaattg aatatttgaa acaatatgtt aataaattta ctgaatggga tgaattatta      5340
     gaatatgcaa ctttttctta taatacgagt acacatgaat caactggata tactccatat      5400
     gagttggtgt ttggcaaaat agccagacaa ccgtccagtg aaataattaa tgatacagaa      5460
     aaaggaaaaa catatgacga ttatttatgt aaattaatga caaatattca caacttacaa      5520
     gaattggctc gagaatgttt aatagcttca aaaattaaat ccaaacatta ttatgatcga      5580
     aaaattaatc cacaagaatt tcaagttaac gatcaagttt tccttttatg tgaaccaaga      5640
     aaaggaaaac taggtgatca atattctgga tcacatataa taacagatat attatcaaat      5700
     ggaaatatca aaattctttt caaaggaaaa ccaaagattg ttcatcctaa taaaattcga      5760
     aaaaccaaaa aatgacaatt acctaagaaa ttgaacttgt accgcgcaac aatttcaatt      5820
     tcattcataa taataatatt tctttcaaaa cagatgaaag cgaaaatctt cctcttaatt      5880
     ctcatccaga acatcttggt agaagaaaac tatggaatta tcggctttga ctgcggaaca      5940
     tccaacctga atgtcacaac attgtcatta ttggaaacag aagaatgtaa tataccgcta      6000
     atcgaaccac aaatacaaga aactaaaatt caattattac aattgtcgaa attcgaatct      6060
     atcaatatta tacaatgtaa aatctcaatt ttgcgaacaa tttattattg cggcatgtat      6120
     tcacatatat caactgtaca aaatgcgcaa gcagaatata taatcgacac aacattcgac      6180
     caatgtaaaa atatgcacaa aaccggaaca ctaactgtaa acataaataa cataattaac      6240
     ggattaaaag taaattatac aacttcacga ccaattattt ttgccggatc tgtaacaacc      6300
     gatggaaaat gctttggaac acaatattca gatccatatg gaacttggca agatgtagtt      6360
     gtacaaggaa taatgactat aagtttattt tcatatcaag caataataaa tattgaaaca      6420
     aatcaaattc atttaaaaac aggaacaatt tgtcaatatt cagatggaaa ttgcatagat      6480
     atcgaaggta gatatacttt ttgggaaacc ataccaacaa atttttgtaa atttaattat      6540
     tatgacgtat tatatgaagg aaaagcgaac aaaatgatta gtaacataaa tgaaaaatta      6600
     caaataattt attccttgtc aactcaagat ataacttttg cgcttactca aactggagaa      6660
     gagtttcttt gcggatatac tttaataaaa acagaacatc caaaattatt aattcttgaa      6720
     attaaaaatg aaggaacttt tattcaaaaa cgaaaattat cagttgaaaa tttagatatt      6780
     tttgcttatg taaattcaaa atttgtttac gtagaaagac atatacgaac acaaatgaat      6840
     catttataca cagatgtact taaacaacgg tgcaatttgg agcaacaaat tatgaaaaat      6900
     gcacttagca tagccacaca ttctccagac gatttcgcat atcaaattat gaaaggacct      6960
     ggatatatgg cagcaatatc aggagaagtc gtccatataa tcaaatgtac tccagtcgaa      7020
     gttaaaattt atcatacgaa ggaatgttat caacaattac cagtattaaa aggaaatgaa      7080
     acatactttt tagcaccacg aactcatatt cttttcaaaa ccggaacgca aatcacttgc      7140
     agcagaataa ttccaacaat gtattattta aacgacggat ggtataaaat tacaccaatt      7200
     ctggaataca gcaaatctcc attaaaacta acaccaatga cgaaaccgac ttggcaatac      7260
     aacgatcctg gatcattggc agcaagcggc atatatacaa acagcgaact cgaaaattta      7320
     cgagaccata ttatgtttcc agcagagaag aacggaattt taaacacgat ggcctcgtgg      7380
     tgtaatagga gaaccgacct tatctcaagg aatatcactm tctcatcttc tcgatgaaaa      7440
     ctctctatat aaaattaccg aatctgcatg gaagaaaatt tggggaacat tcctatctat      7500
     cggaaacgca agtgcaggac taattggatt atatttctgc ataagaacaa tcaaattaat      7560
     aatagacaca ctaattcatg gctatgcact tcacacaatt tatggttggt caatatatct      7620
     catcggagcg ctttgggact cagtcacaaa tctattatta catctagcca aacgaaaacc      7680
     ccaagaagaa agaaaatcag aagaaaaaag actagaggaa ggaaatcaac aatcaaatga      7740
     acaacaagaa ataacacaaa tacctacaca acaacaaaca caagtcgaaa tagaaaatga      7800
     aattggaaat tcaagtcaaa cttttatccg caacgaaact caaaccctat atccgcgatt      7860
     ataaagagat aacgaaaaga tagcatgaaa gacgagccct atatcgatcg aacaaaacat      7920
     gtatcaagcg acaagcaaat aaagataaca ggtgcaaatt cttacggtag agttaattaa      7980
     cagttgaagt tcagccgtgt aagaagaaag aacaaaatta taatagtaaa ttaataataa      8040
     acaaccttac aaaacaaatc aggtaaattt taaatcacat tttgactcat caaaattaaa      8100
     ttttactaat tctttttata tacaaaagag aaaatgagac cgccgacaca acaagaagaa      8160
     aaaccacaat tagacggcgt actaccccaa aatcatccag acgtctatga agctttactg      8220
     aaagaaacaa caatgtgcat taacggcaat aaacgaagaa gagacaatct acagggaaaa      8280
     agacataccc tatagacgag tctgcgacga atgtttctgg gacattgctc tcgacattca      8340
     caattttatc gaggaagtaa gaaattggca cacgctttgt aaggttgaag aacaaattca      8400
     gggaattaaa cgtacatgct attgttgcgg aaaaattgta ttaaatttaa gaccagctaa      8460
     agaatgtata aaatgcgtag aagaatttat taataatgag gaagaatttt actggaaaga      8520
     cgaaatagat gtacgaaatt atgaaaatat tgaaaattaa ttatatatta catacataga      8580
     aataatataa atatagtaat atagtataat atagaaataa tactgtaata tagtatagaa      8640
     ataataatat aaataaatta ataataatta tataccttcg taattaataa taaatgataa      8700
     aaatataaaa tcaaatatat ataatataat atataatata tatatatata taataatatg      8760
     taacaaattc ctaaataaaa agtataatac taaaaataaa gagaatatac ataaagcaaa      8820
     ttcatgcata cattactaag gcatatatac caacacatta catacatgaa aaatgaaaca      8880
     ggaagcaata gataagtcca cattaaacaa aggcaatgaa atccaatacc tttctcacct      8940
     aaacaaaaga gcgttataag ataagagtga catagagcat aagctaaggg ccaagagcct      9000
     tgccgaaaaa aaaatcattc agaatcattc tgttcctcgt acgagacgga ctcattctac      9060
     gcatcaaacc aatagataaa atgcaaaagg aagaaaaaga aatagaaaac tttaaaaaac      9120
     aaataaaaga tccagaattt gattgtgctg taagtaactg agaaaattaa ttaataaata      9180
     aatataataa atataataat aaatttattt tcttttaaga tacagaaaca acaaaaccaa      9240
     aaaataaact acacaaaaat gctaggagat ctggacctaa aatgtatcac agggccggac      9300
     aaattcaaca aactacaaag aaaatactat aattatatat tttatgaact atacctccta      9360
     gaaggaaaat atgtggaaat tgctttaacc caaccaaaaa ggcgcagaaa attttaaaaa      9420
     actacctctt ccaaattggc atagtcacgc aattgttaac gaaaataata tagataaaaa      9480
     aataaaatgt tgtaaaatgt tataaaaaac ttttaaaaat taagaaaaga aactattaga      9540
     ctgtgaaaaa tgtattagaa attatatatt agaaattata tattaaaaaa aaaccaatct      9600
     tcttatcaca gaagaaatat acttatttaa tatgtaacat atgaaataaa taaatactca      9660
     ataatacagt aattacctaa taaaataaac aaataaataa tataaaaaca aataaacaaa      9720
     caaacaaaca aaaaaaaggg aaaggtggaa catattttgt atttaaacca tattactttt      9780
     aaataaataa atgacaacaa ataataaata aataatcata aacaaattaa aaaaaaacaa      9840
     aataataaca aacatataaa tacaatgata ataagaataa tagtaatctc tgtatagaaa      9900
     taagctaatt ttgtatcaga ttaattagta ttattcatac gtagtaacat aaggtactat      9960
     gtatgactta aggggggagg                                                  9980
//
ID   Gypsy-9_PBa-LTR repbase;    DNA;    INV; 933 BP.
XX
AC   .
XX
DT   10-MAY-2012 (Rel. 19.03, Created)
DT   10-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-933
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 688-688 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 933 BP; 342 A; 150 C; 155 G; 286 T; 0 other;
     tgtcacggct atctacatct tataatttta aatgaaggaa tgcgcgtaat atgataaaat        60
     attgatttat tgatttattg attgaattct tgtcggtacc aggcttcgat tgttaccaac       120
     gaagattcag atgacacctc tgagaaagaa ccttccccct cttaattatg ggtttgaaag       180
     aaggaagtgg tgagaagctc gcgcggggat tctgaccatt tccacctata aatatgcgtg       240
     cggaaaaagc ggccgcggcc tttcttcggt actaactagg cggtgacatt agtcagtggc       300
     gcgtgatcaa ccttagggtt aaattcttaa atttataatc aatttctgta atatttctct       360
     taggagaatt taaaagcctc ctcgattaaa taaaggtaat tttaaattaa aataattggg       420
     aaaactgaaa tcttaaattc ttcttaatta aaatcaagat cataattcta aatccaaaac       480
     cggtcgctaa caatagcgta gcgtaccatt tagtcgcagc caatggtgtt gcgactgaat       540
     aatttgaatt tagaatctta ataataaata attattttca aacgtattca tgcccaaaag       600
     aggagggcgc aaagttcaaa ttaaaagatt aagatttcag ttaaatcaaa cgataatttt       660
     aaataaggat cccctctcat tgttcctaaa acttaaaaat ttggaaagac aaactaaaat       720
     taaaataatt aagcaaattc ctaaatataa attaagaaaa attgatttcg atgtaaatta       780
     tccaaattat aatcaaatta ataagaagga tcctcgatac aaaatttata aaattcgttt       840
     cctatttggg gttgattaat tcacaaaccg gtccaatccc agggtaaagt acttaaatgt       900
     attgacctaa aaacggacaa tcaggacgta aca                                    933
//
ID   Gypsy-9_PPo-LTR repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-129
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2978-2978 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5bp TSDs.
XX
SQ   Sequence 129 BP; 40 A; 21 C; 21 G; 47 T; 0 other;
     tgtaatgtag gtaactggta attattataa cacgacttat attattatac cctgtgaata        60
     ttggagaatt gtatttagtc ggattataca tcttggacaa cacgcacgtc ttttatttcg       120
     tacaccaca                                                               129
//
ID   Gypsy-9_RP-I repbase;    DNA;    INV; 5651 BP.
XX
AC   ACPB02035853;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_RP_;
KW   Gypsy-9_RP-LTR; Gypsy-9_RP-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5651
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02035853; Positions  107255  112905.
XX
CC   Positions [3728-4204] - Integrase core
CC   'TGAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1378..3255
FT                 /product="Gypsy-9_RP-I_1p"
FT                 /translation="MGWDLMRKLGLVVDAGRGQVTIKPRNPSVALVENGCK
FT                 EKAVSYGTDNQENRERHPNRSREGSASEIGVKVARCQKIPGHSECLVEGKI
FT                 ARDLEGDILLEPLMPIEGGLRIARSLNRAEGRRVWVKVINLTESEVNVGKG
FT                 QWVATAERVDLGGESSHSKVVGAVGQEVVPEGEVEVECIGKLSHLAEGDRG
FT                 KLMKVLRMYLQVFVEPGPEGCKLPVYHRIKTTEEGPVIKRPYRVPYNQRPI
FT                 VEEHLREMLDKGVIAPSSSPWSAPIVLVPKKSRDGTCKYRFCTDFRGLNKI
FT                 TKVDPYPLPLITETLENLGRSRYFSTIDLASGYHQIPIHPEDCEKTAFSTI
FT                 GGHFEYKRMAFGLVNAPATFQRLMDQLLSEIKGEECLVYMDDIIIYSPTLE
FT                 EHCRRLSNVLHRLERAGLKANLGKCAFAQREVQYLGHIVSSEGVKPDPNKL
FT                 VAINSYPAPNSAKEVKSFLGLAGYYRRFIKGFADLAQPLTSLLKKDVAFTW
FT                 GKEEQSAFESLKGALCSSSVLVYPDFRDSFILATDASGIALGAVLSQMCAG
FT                 QERPVAYASRQLTPAEQKYSTTERELLAVVWATTQFRCYLLGRKFKLVTDH
FT                 AALKWMLSVKDPSAKIDTLVPKIVRIRV"
FT   CDS           3512..5008
FT                 /product="Gypsy-9_RP-I_2p"
FT                 /translation="MVPAKQRIRLIKAHHDTPWSGHPGIERTLTRIKENFF
FT                 WPEMARNVELYVKSCQSCNERKTPSGLAVPLGRVNEATYPFELVSLDVVEC
FT                 PLSSRGNRYLLTMVDHFTRYAEVIPMRTQTAEETPRAFVHNIILRHGAPRQ
FT                 VLTDRGTNFLSNLFKAVCHLLHIKKLQTTAYHPQSNGIVERMHRTLIDSLS
FT                 HFVRKDGRNWDRWVPFVVMAYRSTVHSSTGFTPHYLLYGRDFEMPFDFPYT
FT                 WQQRAASVEDYVMQLKERLSAAYAQAKGSEAKARESWTRFYDAGKKDRVFR
FT                 VGDKVYLLEPAVPQGQAKKFYKPWTGPHEISAQLPPCDYELALNTGGRYVV
FT                 HANRLKPAYQAREDHGSGQANVEAHPSRVAEEPTTSGSNSPADNEQGWWED
FT                 LSETPPRVSLAPSTPGEAVEEGEEDGPESSESTLAEGDSSWHPTPGSGIQQ
FT                 KTQGLLICYVGRRASRNLTPFLGRLGSICGRGIVESAWRMNNGELPDSVLI
FT                 PTD"
XX
SQ   Sequence 5651 BP; 1544 A; 1205 C; 1646 G; 1256 T; 0 other;
     ttggtgtcag gtgtggggta tagtcggaaa cccgtaacgt ttccccgtcc ttagtattag        60
     tgctctggaa ttatggaaga ggtgaaggca ctaaaggagg aggtagacag gttgaaagag       120
     gaggtgcgct ggatgaactc ccaaagggaa gcagcaggcg tatcctctaa tgaagggggg       180
     gttaagcgag atctttccct tcaatcttta atcatgcctt ggagtgggga catatcagat       240
     aggcctattg accaatttct gcaaaatttt tccttagtgg ccgaaagagg cgggtggtca       300
     gaggcggata aaattatgat atgtcgtctt aaactaaaag gtgctgcagc agattgtgtg       360
     gcttgtcgac cggagctatt gctacccacg gcgacctttg cggatatggt tgatgtgatt       420
     agaactcgct ttgtggggga ggctacgcct gagcaaaagc tgttggagct taactctctt       480
     gaacaactgt cgggggaaga tgcgcgtcag tttgcagatc ggtgtcggca agtcggggag       540
     gaaacattgc ctatctcggc atcagtagct gaagcggggt gggctagggc tcagcttgaa       600
     agaattctta tggctgccta tataaaaggg ctcaaaggag aaccaagccg acaactacaa       660
     tacgatcccc gaaacgtttc acgaagcgtg gcacgggctt cgcgtattga gcaagtgagg       720
     tgaagtcaac ctctcacggg aaatatgggc tgtgcaagga agttccggtc tagaagggaa       780
     gacaacagtg gagccccaac gatcagggag catgtgcttt cgttgtggga gaccgggaca       840
     ttttgcaaag tcatgtgatc tgagaaggag gaagagcctt gggtggggta accaacgcag       900
     tgaggctgct ccctcaaaaa gggagacagc ctgttttgtt tgtggccaaa taggacacta       960
     tgcgcgagag tgcgctcgac gagctacctt agcaaaagtc aggacttgtt atgagggaac      1020
     aggcccgcac ccaaaagcgg agggctcgac cgatggcccg acgtcgaatg cccgttaaaa      1080
     ccgagggccc ctgccctggt gccaagtgta gcaacgggga agtctaaggg tttaacaata      1140
     cctgtgttta caggaaagag tcggttggaa ttacttgttg acagcgggtc agaaatttcc      1200
     attttaaaac aagcaattcc tggagtggta gtcaagcagt cccgtattaa agcaacagga      1260
     gttacgggga gttcggtacc cattagaggt gaacaggaac tggagttctt tgtagagggg      1320
     agccgggcga accacacctt tgtgatcgct gcggtagcca ctcgcgggga tggtctcatg      1380
     ggttgggacc taatgaggaa actagggttg gttgtagacg ctggccgagg tcaggtcaca      1440
     attaaaccca gaaacccgtc agtagcactg gtggagaatg gctgcaagga gaaagcagtg      1500
     tcctatggga cggacaatca ggagaacagg gaaaggcacc ctaacaggtc tcgggaaggc      1560
     agtgcaagcg agatcggcgt gaaggtagca cgctgtcaga agataccagg tcacagcgaa      1620
     tgcttagtgg aggggaagat agcccgtgac ctggaagggg acattctttt agaacccctg      1680
     atgccgattg aagggggctt gaggatagcg aggagtttaa accgggctga aggccgccgg      1740
     gtttgggtga aagtgataaa cctaacggag tcagaagtga atgttgggaa gggtcagtgg      1800
     gtagcaacag cggagagggt ggacttagga ggcgaatcgt ctcactcgaa ggtggtaggt      1860
     gccgtgggtc aggaagtggt cccagaggga gaagtggaag tcgaatgtat tgggaagtta      1920
     agccacttgg ccgagggtga tcgcggtaaa ttgatgaaag tgctacgaat gtatctacaa      1980
     gtctttgtgg agccagggcc agaagggtgc aagttacctg tgtatcatag aattaagaca      2040
     acagaggaag gccccgttat caagcgtccc taccgggtac cctataatca gagaccaatt      2100
     gtagaagaac atctccgcga aatgctagat aagggggtaa ttgcaccatc aagcagccca      2160
     tggtccgccc cgatcgtatt agttccaaag aagagcaggg atggcacgtg taagtaccgt      2220
     ttctgtactg attttagagg gcttaataaa atcacgaaag tagaccccta tcctttacca      2280
     ctgataacgg aaacgttgga gaacttgggt agaagtcggt acttttccac tatcgatttg      2340
     gccagtggtt accaccaaat ccccatccac ccagaggatt gcgaaaaaac cgctttttca      2400
     actatagggg gccattttga gtacaaacgg atggcttttg gtctggttaa tgcgccggct      2460
     acgtttcaac gattaatgga ccaattattg tcggaaatca aaggggagga gtgcctggtt      2520
     tacatggatg atataattat ctacagtcct actctcgaag aacattgccg acgattaagt      2580
     aatgtactac atcgcttgga gcgtgcgggg ttgaaagcaa atcttgggaa gtgtgctttt      2640
     gcacagcgag aggtgcagta cttggggcat attgtatctt cggaaggcgt aaagccagat      2700
     ccgaacaaat tggtcgccat caactcgtat cccgccccaa actctgcgaa agaagtaaag      2760
     agtttcttgg gtcttgcggg gtattaccgc cgcttcataa aggggtttgc tgaccttgcg      2820
     caaccactta cctcgttact aaagaaagat gtggcattca cttggggcaa ggaggaacag      2880
     tctgcgttcg agtctttgaa gggtgcactg tgttcatcat cagtgttagt atacccagat      2940
     tttcgggaca gttttatatt agcgaccgac gcttcgggga tagcgctagg agcagtactc      3000
     tcccaaatgt gtgcggggca agaaagacca gtggcttatg ctagccgtca actaacaccg      3060
     gctgagcaaa agtattccac cactgaaaga gaattgctag cagtggtctg ggccacaacc      3120
     cagttccgtt gctatctttt aggtcggaaa tttaaactcg tcacagacca tgctgctttg      3180
     aaatggatgc taagcgtgaa agacccctcc gcgaaaattg acacgttggt ccctaagatt      3240
     gtccgaattc gtgtatgatg tggaacatag accagggatt aaacacctta acgctgacgg      3300
     gttaagtcga agggtcgctt cagcttccaa gccagagttg ttcggtgaag tgcagtgggc      3360
     cacggggaaa agcgaccagt tcgggcaaga gcagtctaaa gatcgctggt gtagccaaac      3420
     caggaagtcc tggccggaga aaacctatgt tcacgaatcc gggctcttgt actggacgga      3480
     tggtaaagcc caggaagacc agtggcgaat aatggtacca gctaaacaga gaattcgttt      3540
     aatcaaagcc catcatgaca ccccctggtc cggccatccc ggtatagaga ggacgttaac      3600
     tcgtattaaa gaaaactttt tttggcccga gatggccaga aatgtggaac tgtacgtcaa      3660
     gagctgccag tcgtgtaacg aacgtaaaac accgagtgga ttagcagtac cattgggccg      3720
     ggtaaatgaa gccacttatc ctttcgagct ggtctccctc gacgtggtgg agtgcccgct      3780
     aagtagtagg ggaaaccgct acctccttac tatggtcgac catttcacaa gatatgcaga      3840
     ggttatcccc atgagaacgc aaacggctga agagactcct cgggcatttg ttcataatat      3900
     tattttaagg catggggccc ctcgtcaggt tctgaccgat agaggtacga atttcctgtc      3960
     caatttgttt aaagctgtct gccacttgct gcacataaag aaactgcaga ccaccgccta      4020
     ccatccccag agcaatggga tagtggagcg tatgcatcgg acactaattg actctctttc      4080
     ccactttgtt cgaaaggacg gccggaattg ggatcgatgg gtgccatttg ttgtgatggc      4140
     gtaccgctct actgtgcatt cgtcaacagg gtttactcct cattatttgt tatatgggcg      4200
     agactttgaa atgccatttg attttccgta tacttggcag caacgggcgg cgtcagtgga      4260
     ggactatgtg atgcagttaa aagagaggct ctctgcggcg tatgcccagg ccaaagggag      4320
     tgaggctaaa gcccgagagt cgtggacccg tttctatgac gcggggaaga aggaccgggt      4380
     atttcgcgta ggcgacaaag tgtatttatt ggaaccggcc gtaccacaag gtcaggcgaa      4440
     aaaattttat aaaccgtgga ccgggccaca tgagataagt gcacaacttc ctccctgtga      4500
     ctatgaattg gctctgaata cagggggtcg atatgtggta catgccaacc gcctcaaacc      4560
     tgcctatcag gccagagagg accatggtag tgggcaagca aatgtagagg ctcacccctc      4620
     aagggttgca gaggaaccaa ccacctcagg tagtaattcc ccggcggata atgaacaagg      4680
     gtggtgggaa gacttgagtg aaacccctcc cagagtctcc ctagcaccat ccacaccggg      4740
     tgaggcggtg gaagaggggg aagaagacgg ccccgaaagt tccgaatcta cgttggcaga      4800
     gggagattca tcgtggcatc ccactccggg gagtgggatc caacagaaaa cccaaggtct      4860
     ccttatttgt tacgtgggca ggagagcgag caggaatcta actccattcc tagggaggtt      4920
     aggatcaatc tgcggccgag gcatcgtcga gagtgcatgg aggatgaata acggcgaact      4980
     accagattcg gttctcatac ctactgattg acggcaaaac tattggaata taagcttatg      5040
     aaacaaaacc aaagtattag tattgataac tcgggctcag atgagcagta tatggatggg      5100
     catgtgcggc ggtggggatg tggacggaga aatggccgtg ggaaaatgag aggatctaca      5160
     gagtaagctc aaaatggatg ttccacaagc tgaataccag caaagagaga ttttggtagg      5220
     ccaactcaga aatccagtca gccatctaag agcggagtat ctttgagcag gggagatcat      5280
     agggctgaag attgccttac gtaagccaca aacataggca atgagatcgt cgaggcacct      5340
     aggaagaaag aaactcaccc tgaaaacctg acccgaaggg aggagtagcg ttggaagctg      5400
     tgcgggaaaa atggtagggc aagaggagcc ctcggagcga tagctttcca gatgttagag      5460
     ttcgagaagt ggcaatatcc tcgccaatgg gatacaccta catcgcatca actgcgaaga      5520
     gagctaccag gaagattcca ggttcagcgg cccatgtgga ggggcactag gagtgaacca      5580
     gaagctgcgg agtcaactac ctcccctgag cttgaaaagt ggagtccact tttcttcaaa      5640
     gggggggata a                                                           5651
//
ID   Gypsy-9_RP-LTR repbase;    DNA;    INV; 404 BP.
XX
AC   ACPB02035853;
XX
DT   28-JAN-2011 (Rel. 16.02, Created)
DT   28-JAN-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the Rhodnius prolixus genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_RP_;
KW   Gypsy-9_RP-I; Gypsy-9_RP-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-404
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the Rhodnius prolixus genome.";
RL   Direct Submission to RU (28-JAN-2011).
XX
DR   Genome; ACPB02035853; Positions  106851  107254.
XX
SQ   Sequence 404 BP; 96 A; 61 C; 102 G; 145 T; 0 other;
     tgtaactggg cactagaatt agttgctagg tttatgaaca cagctgggtt tttattggaa        60
     gaaaaagtat attattgact ttcgggcatt ctgagttggg acttgctgga atacagacga       120
     ggattgagag tttgtagaaa agccaagttt ccctcttgct gacctgcgac ttttcttgtc       180
     tgcggcccat gcggcgtatg tatgtttatt catgtaccaa atattttgtt aagtaaatcc       240
     gttaagtaaa ttcatcagac ttattgttat catagctttg ttcaagtagt ttagttgtcc       300
     tatctatctg tgagtgtatg tacgtgtgtg tgagtgtgtg cttgagtgtg tgtaagttgc       360
     tctctataga agtgtagttc gtacgaggta gcggctggcc taca                        404
//
ID   Gypsy-9_SI-I repbase;    DNA;    INV; 4918 BP.
XX
AC   AEAQ01022575;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SI_;
KW   Gypsy-9_SI-LTR; Gypsy-9_SI-I.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-4918
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022575; Positions    5343   10260.
XX
CC   'ATGT' target site duplication
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1804..3408
FT                 /product="Gypsy-9_SI-I_1p"
FT                 /translation="MKLQGVIEESHSPWVSPAVLVKKKDGSLWFCVDYRKL
FT                 NAMTKKDSYPMPRIDDLFDYLFGSSWFSTLDLKSGYWQVKLRYQDKEKTVF
FT                 SIGNGLWQFTVIPFGLCNAATFEHLMEKVLRQIINKICLVYIDDVIIFSKS
FT                 FEGQLDNLRKVFFCFRESNLKLNPKKCSFFGRRVYYLGHIILEDGISIDPE
FT                 KIKPIRDWPIPRNTKQLPGFFGCCSYYRKFIKVFSLFAKPLYVLTKNQSKF
FT                 IWNEQCQSAFEKLKQFLLSSLILCFPSEIGEFVLDTDASNHGIGAVLSQKQ
FT                 EEKEKVIAFYSQVLSKSERNYCVTRRELLAIVAFLKNFHHYLYGRKFTIRT
FT                 DHISLRWLLSFKELDGQLARWLEHLQQYDFEIVHRAGKLHGNVDALSRHPC
FT                 AEFSCRFCDKIKSREEELKNNSLGRIVFEESEFENWKKAQLEDQSIVNIYH
FT                 EKEIGVRPSRQELAPNDSSLKVYWILWDSLVIKDGVLFKKWISLDFHTEVL
FT                 QTIVLKKLIRQVLEEAHDSASGGHFGVNKTLAKIRKRFY"
XX
SQ   Sequence 4918 BP; 1511 A; 721 C; 1027 G; 1659 T; 0 other;
     ttttggggct tcgtccggga tcgagacgga ctatcttttc gtttacgtgt aaacaaactt        60
     tgagccatgg cttttgccac atattccacc gagcccacgg aagggtatgt gcacgcgttt       120
     ctcaacaatt tctggacgtc ctttgggaga cgaagaacat tcatgcacgc ggccttcgga       180
     tgatactgtc gagcgaacaa cggaagatgt cgtcgaaccg acgatgggtg ataaaacgac       240
     gggcactgcg gagttactgc gtgctgcttt agaggagctc cgtaagatga aggaggaccg       300
     tctcagtttt tagtagcgtg aggaggagct ttgtaaacgg ttacaacaag cagaacaagg       360
     ccagtcattc accaatttta actccgattt aattgttgaa aataatatag aatttaaatt       420
     aaagccagac gtatatcata gtagtgctcc ggtgcgcgaa tttctcacgc aattccattt       480
     acacgctcgt gtgaataatt ggtctgattc ggttaaagta gcgattttgg cttcatgtct       540
     aagagggaag gcacgttcgg ttttggatgg aatttcagat gtagaaaatt tacaattttc       600
     cgaattaaaa tcgcgtttag aattacgttt tggagaaagt catttaactc aatcatttta       660
     cacacaattc gttaatagaa ggcagcgttt tggtgaagat attcccactc taggagctga       720
     ttttaaacga ttatctcgtc ttgtttatcc agattgctcc gcgatagttt aagataaaat       780
     tgcgtgttct caatttgttg ctgcgctttc agatagtttt gttaagcgga cccttcaact       840
     ggagggaata atctctttac gtgcagccgt agaaaaagca atggctatta aaaaaacagt       900
     ttttccagat tttcagaaaa atcaaaattt atacagaaaa gtaaagaaag gaaagattct       960
     gttaataagt ttttaaaaat tgaaaatttt aaggaaaaag aaaaaatttt tcgaaaaaat      1020
     attgaatgct ggcaatgtgg ttccaaagga catttttatt cagaatgtcc attacttacg      1080
     ttagcaggga aacagggaaa cttggagtaa ccgagcttta caggctaatt tcgcatggct      1140
     cggcgggaga aaaaaaaatt aagaaaaaaa tttctttgaa gtctaatttt atgctaagtg      1200
     ataatttttg ttttcctggc tctctggatg gtcaatcttg tacttttgaa atagatacag      1260
     gttccgatgt ttccgttctc aacagaaagt ttgttaagga aaataaacag cggattttca      1320
     ttaaacattg tacgttgagg tatcctactg gagaagaggt ctccattgat tttaaactca      1380
     atgcaaaaat tgtcttaaga aagtactctt tggagttccc catgtttgtt tcagagattg      1440
     gggatgattg tattttgggt gcagatttct taattaaaac cggtcatggg gaaatttttg      1500
     ctttagcttt tggaaaagat cgtgcagaat taaaaaattt ttcttgtact taataatctt      1560
     gaagttccat cttttctgtt aaattgtttc gggaaaaatt cttctgagct caatattgct      1620
     gaaaagagac agtttgcaaa ttttttgaag aaatttcaag atatattttc tgaggaagtc      1680
     attgcaggaa attgcacagt cgtggaacat tctattaatt tagagaaaaa agatcctatt      1740
     aaacagacac caagacgaat accatttcaa ttgcgtcaca aagtggaaaa aattttagaa      1800
     gaaatgaaac ttcaaggggt tatcgaggag tctcatagtc cttgggtttc tcctgctgtt      1860
     ctagttaaaa aaaaggacgg ttctctttgg ttttgcgtag attacagaaa gttaaatgct      1920
     atgactaaaa aagattctta tcctatgcct agaattgacg atctttttga ttatttattc      1980
     ggaagctctt ggttttctac attggattta aagagcggtt attggcaagt taaattacgt      2040
     taccaagaca aggaaaagac tgtattttcg ataggaaatg ggttgtggca atttactgtc      2100
     ataccttttg gtttatgcaa tgcagcaact tttgagcatt tgatggaaaa agttcttcgt      2160
     caaattatta ataaaatttg ccttgtttat attgatgatg tgattatttt tagtaagagt      2220
     tttgaaggtc agttagataa tcttagaaaa gttttttttt gttttcgaga atcaaattta      2280
     aaattaaatc ctaaaaagtg ttctttcttc ggaagaaggg tttattattt gggtcatatt      2340
     attttagaag atggaatctc tattgatcct gaaaaaatta aacctattcg agattggcct      2400
     attcctcgta acacaaagca attgcccggt ttttttggtt gttgttctta ttacagaaag      2460
     tttatcaagg ttttttctct gtttgctaaa cctttgtatg ttttaaccaa aaatcaaagt      2520
     aaatttattt ggaatgagca atgtcaatca gcttttgaaa aacttaaaca atttttgttg      2580
     tcttcattaa ttttatgttt tccttctgaa ataggagaat ttgttcttga tactgatgct      2640
     tctaatcatg gcattggtgc agttttgtct caaaaacagg aggaaaaaga aaaggttatc      2700
     gctttttata gtcaagtatt aagtaaatcg gaaaggaatt actgtgttac tcgtcgtgaa      2760
     cttttagcaa ttgttgcttt cttgaaaaat ttccatcatt atctttatgg acggaaattc      2820
     acgattagaa cggatcatat ttctttacgt tggttgttgt cttttaaaga gcttgatggt      2880
     caattggcac gatggttgga acatctccaa caatatgatt ttgaaattgt tcatcgagca      2940
     gggaagttac atggcaatgt tgatgcattg tctaggcatc cttgtgctga gttttcttgc      3000
     agattttgcg ataagataaa atctagggag gaggagttaa aaaataattc tttggggaga      3060
     attgtttttg aagaaagtga atttgaaaat tggaaaaagg ctcagttgga ggatcagtct      3120
     attgtaaaca tttatcatga aaaagagatt ggtgtgcgtc cttctcgtca ggagttagct      3180
     cctaatgact cttccttgaa ggtttattgg attttgtggg attctctggt catcaaagat      3240
     ggagtattat ttaaaaaatg gatttctcta gattttcata cggaagttct tcagacaata      3300
     gtactaaaga agttaattcg acaggtgttg gaagaagctc atgattctgc ttctggtggg      3360
     cattttggag tgaacaaaac tttagcgaaa attcgaaaac gattttatta ggcttcttgt      3420
     aagcaagatg tcaaacatta gtgtaaaact tgtaaggttt gtttttctaa aaaaggtctt      3480
     tctaaaaagg ggaaatctcc ttttcagatc tataatgttg gagttccttt tgaaagagtc      3540
     caaatagata ttcttggtcc tcttcctacc tcttcgtctg ggaaaaaata tttattagtt      3600
     attactgatt gtttttttaa gtgggttgaa gcttttcctg ttggaaatat taaagcgaat      3660
     actgtagcaa aaatttttgt taaccaggta gtttctagat ttggcgttcc tttagaaatt      3720
     catactgatc aaggcagaaa ttttgaatct cggttatttc aggaactttc tcgtttgttg      3780
     ggaatcaaaa aaaattcgta ctactccgct tcatcctcaa tctaatggac aaatggagcg      3840
     tcagcatcat gcacttttga atttcttagc aaaatttgtt tcagagaatc aaaaagattg      3900
     ggatcgttgg atttttctgg atttgttagc ttataggtct tcaaagcatg aaagtactgg      3960
     ttttactcct tttgaattat gccaagatag agagttaagg ttacctttag atctttttcg      4020
     tggacgtcct ccagaaaaaa ttcagaatca gagagaggat acgtctctaa acttagagaa      4080
     aaattagttt taattcatga tgttgtcaga cagcgtttgg gaatcaaatc tcaaaaattg      4140
     aagttgtggt atgatcaaaa agataggcgt ttttcttttg aactaggtca gaaagtttgg      4200
     ttgtataacc ctcgaagaat acttggtagg gctcctaaat tacaaagtaa ttgggaaggg      4260
     ccttacgaag tcattaagaa aattaatgag gtagtttatt gcgtacggaa atctaaaagg      4320
     cataagaaca aggttgttta tttagatcaa cttgctgtat ttcaagacag aaaatctttg      4380
     taggggaaga gagatttgtt taaaatattg atagagccta gaatatattt ttttttattg      4440
     tttttaagtt ctttaataac ttgaaaaaca cttttcgctg ttaattgtat ttttctttgc      4500
     agaagtttgt tttcttcaaa tctttggatt gaagcaagaa gcatcacgac gaaaaggagt      4560
     tgattatttt aagttaataa ctcttgatag aagtccgtct ttccctcggt tttttttgaa      4620
     ccgtggtttt tccgaaggga cttagggtaa atgccgatac gggaacgcga ggagtctcgc      4680
     aagagacgct gtgtccatgg gaaaatttat tttctttctc ccccttgtcc gaagaattaa      4740
     gaaagaagtg ctcaagactc aaaatgaaga gtgagaacga gccactcaaa gacaaagata      4800
     cgcagctcag aaatcccttt gcagcagctt gggaagagca agaagtcttt cgggagctcc      4860
     ctgtcggttg tcgggacaac aacttgaaaa aggggggcag tgttacgacc gtgaatgt        4918
//
ID   Gypsy-9_SI-LTR repbase;    DNA;    INV; 201 BP.
XX
AC   AEAQ01022575;
XX
DT   15-FEB-2011 (Rel. 16.02, Created)
DT   15-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the fire ant genome: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SI_;
KW   Gypsy-9_SI-I; Gypsy-9_SI-LTR.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RP   1-201
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the fire ant genome.";
RL   Direct Submission to RU (14-FEB-2011).
XX
DR   Genome; AEAQ01022575; Positions    5142    5342.
XX
SQ   Sequence 201 BP; 46 A; 31 C; 52 G; 72 T; 0 other;
     tgtaaagtgt agatcgatta aatgaagaga ctgtcgcttg ttagcaacgt gttgttgtta        60
     tgatcggact tttggttttg acatttcgtc ttgccaataa cgtcgttttt tctaataaaa       120
     gcctgttttt ttattagtgt gcgcgtgtgt tactgaggtg tgcgagtgcg aaagtacgag       180
     gcgattcacc cggtcgtaac a                                                 201
//
ID   Gypsy-9_SiCu-I repbase;    DNA;    INV; 5024 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SiCu-I.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-5024
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 4972-4972 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           95..5023
FT                 /product="Gypsy-9_SiCu-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MGVYNKTTPFQYFFPSSIMEFQIWFIISMPIITLVVT
FT                 HYCYLMFNRFWSWLWSDFGQESSKEQQQSPLSPVPPTSTITMQPPPTYSKD
FT                 IGKLKKEMEQLCDKFRAQIADAEKDARSFTEFVNQRHDLRYKEITKSLHSE
FT                 TQKLTDVQVAMDNLRKDLDEKFHKIREDFETIEEFSNGVEDFMSGEKVSRP
FT                 FLDKLNKHLERRLPLTPTPPSHPQLQTSDLKPTSTSMDFSKGGWILPPPSP
FT                 VTPPTAPPNHAGNQSFLHPQQVIFSQPSTAPPPRFDPHINTADHFLEELDL
FT                 YFHQRRIPPYERIHHLQQVFGKDKELNLWWNRAKLQVKNWQEFTTHFMRMY
FT                 GTPTDFNAAWQKLLQRRQQRNENFATFAMELELQYLKLHRDHNISNTKIIL
FT                 DFISERALPHLAPHLMAYHPTDIYDLIQFAQKLETPLSQPGSNANSFDKRR
FT                 QFTSQDTATYKKPFSAVNSHPSGKTESTRSSCVHCGRDNHSSSTCPRKSTA
FT                 PKVNSAVVITTTEDGHSTPTSESDADDATPEPPPASKCTGSFYINTSYDKL
FT                 NNHQLPIIPVNLLLRNKRSFTTERVQGDCLVDCGANVSVISDPRIYKRRKL
FT                 KKWTRGAIKLVDGNIVHPSGQISFKFRIGHKTFKHVFVVLPDCQFVMLLGM
FT                 DFLRNSGIQLDLESMQFWFKDRGPDVRYAFQIQDNSSNNIRALQILSEWEK
FT                 DIIDKLLHKFPSVLNAPTLGRTDVLQHEVNVTEDKPKRIKPYPYSEEKHKI
FT                 IDKLVDDMLRKGLISESNSPYGSPIVLRPKPNGDWRLVNDFRYVNQLTIPD
FT                 RFPMKRIADMLRVLSETKYLSTMDCEKGFWQVPMRESDKKFTAFQTRKGSY
FT                 IYNVMPQGMKNSPATYQRLMNKILEGTEEFTFVFQDDILIFSKSFEEHLLH
FT                 LQAVLDRLKKAKLTVSSTKCHFGRDRVKFLGHIISSQGIEPNPEKVEAIIK
FT                 LPKPRTKRQLRGFLGAVGWFRHFIPQMAELAQPLYDLLKGKCKFQWNDNAD
FT                 ISFTKLKTALATEVILQHPDFSKPFILRTDAADRGLGAMLVQVDTSGAERP
FT                 ICFASKSFSKAQTNYSALEKEAYAIIFALDRFAEYLDGVNFSIETDNQALT
FT                 YLESMKNTNTKLMRWAMKLQEWSPSITHIKGRDNVVCDYLSRATPIEDDTE
FT                 ELRLNAAFTLSCDLDKRLIKSEQSKDPDCKLLSLKEPDKFSVIGGIVYRKL
FT                 STGKFVPLIPTSLRDQVLKNLHDQPTAGHLGFEKTLKKVRSRAYFPGLRTY
FT                 VKEYVQTCDLCQRNKYPNTSPPGKMGLKQITRPWHTLYLDLLGPYTTSHPH
FT                 RYSYVLVIVDAFSKFVELLPLKDATAAHIGDTIERELFCRFTTPKYIVTDN
FT                 ATSFKSGVLETLCKRWGVVHSFSSPYHPQTNQSERVNRVVKTMIRSFLDGK
FT                 PHSKWPEYLPAFQLAINTSTHDSTGYSPVQILLNLEPNLPFDNVTSPNDDE
FT                 FLDDSNKTNDNCFSSRFSEFEDVFHKAKANLESAQTKQKHNYDQHHRDERF
FT                 QLGDHVSIKNTQLSSKEKKITSGLCPLYRDKGKISKVISDVTYEVTLDDGT
FT                 KRGPLHVQMLRPYRLREQSSNQLPPAQVPADVTTPTHQYALRPRQQIDYRV
FT                 LHHGLQKETTIPSPKFENRRLRRGS"
XX
SQ   Sequence 5024 BP; 1551 A; 1267 C; 986 G; 1220 T; 0 other;
     aatggtgccg aatagggtca acttgcaact aacaaattgt gattagtgcc attattagac        60
     aatatagaca ttaggttaga ggaaagtagg aaaaatggga gtgtacaata aaaccacccc       120
     ttttcagtac ttctttccca gctctataat ggagttccaa atatggttca taatctctat       180
     gcccattata acacttgtgg tcactcatta ctgctacctg atgtttaacc gattctggag       240
     ctggctatgg agcgactttg ggcaggaatc atcaaaggaa caacaacaat caccactttc       300
     tccagttcct cctacctcaa ctataacaat gcagccgccg ccaacctatt ccaaggatat       360
     tggaaaattg aaaaaggaaa tggagcagct gtgcgataag ttccgagctc agatagcgga       420
     cgcggagaaa gatgcacgta gtttcactga atttgtgaat caacgacatg acctaagata       480
     taaagagatc accaaatccc ttcattccga aactcaaaaa ctgacagatg ttcaagtagc       540
     tatggacaac ctacgtaagg atctagacga aaaattccac aaaatacgtg aagattttga       600
     aacgatcgag gagttttcca atggtgtgga agatttcatg tctggggaga aagtatctag       660
     gcccttcctc gataaattaa acaaacattt agaaagacgt ctgcctttaa ccccaacacc       720
     accttcccat ccacaactac aaacatcaga cctgaaacct acatcaacat ctatggattt       780
     tagcaaagga gggtggatac tcccaccacc atcaccagtc acaccaccta cagctcctcc       840
     aaaccacgct ggaaatcaat cattcttgca ccctcaacaa gtcatctttt ctcagccgtc       900
     cacagctccc ccaccacggt tcgaccctca catcaacact gcggatcact tcctcgagga       960
     acttgatctg tacttccatc aacggcgaat tccaccgtat gaacgcatcc accacctcca      1020
     acaagtgttt ggaaaagaca aagagctcaa cttatggtgg aaccgtgcta aactgcaagt      1080
     caaaaattgg caggaattta ctactcactt catgcgcatg tatggaaccc caacggattt      1140
     caacgccgca tggcagaaac tactgcagcg tcgccaacag agaaacgaga attttgcaac      1200
     tttcgccatg gagctggagc tccagtattt gaaactacac cgcgaccata acatatccaa      1260
     tactaaaatt atattggatt ttatctccga acgagcttta ccgcacttgg ctcctcatct      1320
     gatggcatat catcccacgg acatttatga ccttatacaa tttgcacaaa agctcgagac      1380
     accactatca cagccaggct ccaatgcaaa ttcattcgat aagaggcgtc aatttaccag      1440
     ccaagatacg gcgacctaca aaaagccgtt ctcagctgta aatagtcatc ccagtgggaa      1500
     aactgaatcc acacggagct catgtgtaca ttgtggccgt gacaatcatt cctcttcgac      1560
     ctgcccaagg aaatcaacag cacccaaagt caactcagct gtcgtcataa caacaacaga      1620
     ggatgggcat tcaaccccaa cgtcggagtc ggatgcagac gacgcgacac ctgaaccacc      1680
     accagcttca aaatgtacgg gttcgtttta cattaacacc tcatatgata aattaaacaa      1740
     tcatcaattg ccgattatcc ctgtaaattt gctcttaaga aataaacgct cattcacaac      1800
     cgagcgagta caaggcgatt gcttagtaga ctgcggcgct aacgtatccg ttatcagtga      1860
     tccgcgcatt tacaaacgcc gcaaactaaa gaagtggaca agaggagcaa tcaaattagt      1920
     tgatggaaat atcgtacatc cttccggcca aatcagcttt aaattccgga ttggtcacaa      1980
     aaccttcaag catgtattcg tcgttctacc ggactgccaa tttgtgatgc tgctgggaat      2040
     ggatttcctt cgcaatagtg gtattcaact tgacctggaa tccatgcaat tttggtttaa      2100
     agacagaggc cctgacgtac ggtatgcctt tcaaattcaa gataacagca gcaacaacat      2160
     cagggctttg caaattttat ccgaatggga aaaggacatc attgacaagc tcctacacaa      2220
     attcccatca gtcttaaatg cacccacact tggacggact gatgtgctac agcatgaagt      2280
     aaatgtgact gaagataagc caaagcgaat taaaccgtat ccgtactctg aagaaaagca      2340
     caaaattatt gacaaattag ttgacgacat gctcagaaaa ggactcatct cagaatcaaa      2400
     ttcaccgtac ggctcaccga ttgtgttaag accaaaacca aatggagatt ggcgattagt      2460
     taacgatttt cgctacgtta accaactaac tattcctgac cgcttcccca tgaaacggat      2520
     tgcagacatg ctgcgcgttc tctcagaaac aaaataccta agcacgatgg actgtgagaa      2580
     aggcttttgg caagttccta tgcgggagag cgacaagaaa tttacagcct tccaaaccag      2640
     gaaaggctct tatatataca acgttatgcc acagggcatg aagaacagcc ctgcaacgta      2700
     tcagcgcctc atgaataaga tacttgaagg taccgaggag ttcacatttg tcttccagga      2760
     tgacatatta atattctcaa agtcctttga agaacatttg ttacatttac aagcagtatt      2820
     ggatcggctg aagaaggcga aattaacagt atccagtacg aaatgtcact ttggacgaga      2880
     ccgtgtgaaa tttctgggtc acattatttc atcacaagga attgaaccaa atccggaaaa      2940
     agtggaggca atcatcaagc ttccaaaacc gcgaacaaaa cgacaactca ggggatttct      3000
     tggcgctgtt ggttggttcc ggcacttcat tccacagatg gctgaacttg ctcagccgct      3060
     ttacgacctc ctcaaaggca aatgcaaatt tcaatggaac gacaacgctg acatttcatt      3120
     caccaaacta aaaacagctc ttgccaccga ggtcatctta caacacccag acttctccaa      3180
     accttttatt cttagaacgg atgctgcaga caggggcctc ggggccatgc ttgttcaagt      3240
     tgacacctcg ggcgctgaac gaccgatatg ctttgccagt aagtcattta gcaaggctca      3300
     aaccaactac tctgctttgg agaaagaagc atatgccata atctttgccc tcgaccgttt      3360
     cgctgaatac ctggacggag ttaatttctc catcgagaca gacaaccagg ctctcactta      3420
     cttggagagc atgaagaata caaacaccaa attaatgcgc tgggcgatga agctgcagga      3480
     atggagtcca tcgattaccc acatcaaagg tcgggacaat gtcgtttgtg actatctcag      3540
     ccgagccacg ccaattgagg acgacacaga agaactacgt cttaatgccg cattcacctt      3600
     atcctgtgac ttggacaagc gcctcatcaa atcagaacaa tcaaaagatc cagattgtaa      3660
     gctactttcg ctgaaggagc cggacaagtt ttccgttatc ggtggcattg tttatcgtaa      3720
     gctgtcaaca ggaaaattcg ttcctctaat accaacctct ttgcgcgatc aagtgcttaa      3780
     aaacctccat gaccagccaa ctgcgggtca ccttggtttc gaaaagacgc tgaagaaggt      3840
     acgctcgcgt gcatattttc cggggctcag aacatatgtt aaggaatacg ttcagacttg      3900
     tgatctgtgc cagcgtaata agtacccaaa caccagtcca ccggggaaga tgggcttaaa      3960
     gcaaattact aggccgtggc acacacttta ccttgaccta ttgggaccat acaccacatc      4020
     tcacccccat cgctactcat atgtgctggt tattgttgac gctttcagca aattcgttga      4080
     gcttctacca ctgaaagatg ccactgctgc acatattgga gacaccattg aacgagaact      4140
     gttctgccgt ttcaccactc ccaagtacat cgtaacagat aatgccacat ctttcaaatc      4200
     tggagtactt gaaacacttt gcaaacgctg gggcgtggtg cattcctttt cctctcctta      4260
     tcatcctcag accaaccaat cagaacgagt gaacagagtg gttaaaacaa tgataagaag      4320
     ctttttggac ggaaagcccc actcgaaatg gcctgaatac ctaccagctt ttcaattggc      4380
     tataaatacg tcgactcacg atagcaccgg atattctcct gttcaaatac ttctcaatct      4440
     cgagccaaat ttgccattcg acaacgtcac gtctccgaat gatgatgagt tcctggacga      4500
     tagtaacaag actaatgata actgtttttc ttctcgtttt tcagaatttg aagatgtctt      4560
     ccacaaagcc aaagctaact tggaatcagc tcaaactaaa caaaaacata attatgatca      4620
     acatcatcgc gacgagaggt tccagcttgg cgatcatgtg agcatcaaaa atacacaact      4680
     ttcgagcaag gagaagaaaa ttacttccgg tctctgtccc ctctacaggg acaaaggcaa      4740
     aatcagcaag gtcattagtg atgttacata cgaagtcacc ctcgacgacg gcacaaaacg      4800
     gggacccctt catgtacaaa tgcttcgtcc ctaccgtctc cgtgagcaat cttccaatca      4860
     gcttcctcca gcccaagttc ctgccgatgt tactactcct acgcaccagt atgcgctacg      4920
     acctcgtcaa caaatcgact accgtgtgct ccatcatggg cttcagaagg agacgacgat      4980
     tccatctccc aagttcgaga atcgtcgcct tcgccggggg agtt                       5024
//
ID   Gypsy-9_SiCu-LTR repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   09-DEC-2019 (Rel. 26.09, Created)
DT   09-DEC-2019 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from the Sinella curviseta genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_SiCu-LTR.
XX
OS   Sinella curviseta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Entomobryoidea; Entomobryidae;
OC   Entomobryinae; Sinella.
XX
RN   [1]
RP   1-379
RA   Kojima K.K.;
RT   "LTR retrotransposons from the Sinella curviseta genome.";
RL   Repbase Reports 21(9), 5087-5087 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 379 BP; 134 A; 82 C; 58 G; 105 T; 0 other;
     tatagcaccc atagagtaag ctcacggtta gtcacctacc taccaaaacc aaatgacatg        60
     taccacgagg aaacaacatt gacaggattg ggctctgaaa taatctcaga gctcacggac       120
     aaatatctga accactcttc tcataatagt caatacgact agtacagggc tttttcagtc       180
     ttccctgtag agtcataatt cggcaaacaa ataattataa ttgtaaactt tataaaattt       240
     cgtgcgatag tttatttcaa aataaataat cctctactca atcaatattt catgacactt       300
     gatttcgcat agttcaaatt aagtgcataa atgccaggga tggcaggtca atcataaaga       360
     attacgccca cctgtcaca                                                    379
//
ID   Gypsy-9_SiOr-I repbase;    DNA;    INV; 5084 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SiOr-I.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-5084
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 346-346 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           553..1923
FT                 /product="Gypsy-9_SiOr-I_1p"
FT                 /translation="MSRKVEINRLDRDELTYELVYRGISTGTVEEMRARLA
FT                 LARQMEKSGESLHYPPYPFTFQEDVDALTKKLDDMAQRVAGFADNSKSGSY
FT                 MKLQTKLNHVLDRLDRMICTTPEEFSIRALLVGQAFNLIIELKDKSTKADC
FT                 QAAPVPLSLCVLQDNQQPPPIQYNAPGPSTSFTASIPPAAPISSSTPTVQN
FT                 IFSNAKLILPHKWNLKFSGDGKGMSVTAFFERCEELSRARNVTPEMLLESG
FT                 IDLFEGRAYEFYQDCRTEVQTWSELVARFKDEYQPVRYKEKLMEEIKRRTQ
FT                 GPDETIGTYMAIMNRYFHRLQCPITEDAKLTILLRNIAPVYRNQLGAFEIS
FT                 SLAQLKTLCRRIEHRIQTXDYAPPLRKNQSLEPDLAYVDISQDIDELHVSP
FT                 PQTSQSSNIHCSNQREVICNRCKKPGHRAIGCAEPAKLICYGCKREGHMKR
FT                 DCRFSGNGNRRS"
FT   CDS           1866..4856
FT                 /product="Gypsy-9_SiOr-I_2p"
FT                 /translation="ERGPHEKRLQVLGKRKQALLGLRTRSSREKPSEDFVH
FT                 ILDFVLSHARNDERPYLEVDILGXKILGLLDSGASRTFVGQPGWKIFQKFG
FT                 IQLDPSLKTSCTVANGQRVNSIGAIQVPMRVRDRVKMIDVVVVPELPHVLI
FT                 LGSDFWIKMGIVPDLRQNEWHFTDNPDEINCIEERDTVLTPTEEVQLNNLL
FT                 TEYKDLMGDGLGCTNAVEHKIVSTAPPIRQRYYRVSPVIQQYIDKEIDEML
FT                 RQDIIEPSQSPWASPVVLVKKKNTEKYRFCVDYRKLNSVTERDSYPLPLVS
FT                 ETLDKLSNAKYLSSLDIKSAYWQVPIEEASRPLTAFICRRGLFQFKRMPFG
FT                 LHNAPATWQRLIDNVLGADLEPHVFVYLDDVVIVSETFEEHMVIVREVFRR
FT                 LNEANITVSWEKCQFCRPDMKYLGYVVDQRGLRVDPDKVKAMLELPRPKSA
FT                 TEVRRVVGSFSWYRRFVPEFSSIVAPITALTKKNQKFVWTDECEKSFMKIK
FT                 ELLVAAPILSCPDYTKEFVLQTDASGYGIAAVLTQPSPEGEKVICYLSRSL
FT                 TKQERVYSTTERECLALVYAIEKLRPYLEAVPFTVITDHFSLKWLHTLKEP
FT                 SGRLARWAVKLQQYDFKVIHRSGKDLVVPDMLSRAVPVIDAIEPSRDDSTR
FT                 PNVKDKWYNKMVANVCQEPLKFVKWRYTDGKLFKYVKQDYPTLSGDTWKEV
FT                 VPKENRLQIIRDAHDPPISGHMGVYKTYNRLCEKYYWPKMRQDVGSYVKSC
FT                 LKCGAHKDDPRGPSDQMVSHSKPSRPWEMISTDLVGPLPRSYKGNTFILVV
FT                 TDYLSKFSLIFPLRRASTQLIINRIEEQVFLVFGVPRVLLCDNGPQYRSKE
FT                 FRKFTDQYQCRIKFNANYHPRANPTERQNKTLKTMLSIYTHENHRRWDQNI
FT                 PQIACAIRTACQETTKLSPYFINFGRNMCVSGKTTIMMLLLRMKMVHKHWN
FT                 VVETSCSASCIATLKTDLKPPLRRISADIILGRDMKNMYQDS"
XX
SQ   Sequence 5084 BP; 1569 A; 937 C; 1165 G; 1408 T; 5 other;
     attttggcgc ccaacgtggg gcaattcttg acgccgcaac gtgggtaatt cttggcaccc        60
     aacgcttaag gcaattctta gcacccaacg cttagggctg atttgttgta taatttttgg       120
     tacccaaccg atctgggact tagctgtttt attttaggac cacwtaaact aaccgtagtt       180
     tatagttggg acctgttgag tttttttttt gaatcgtttt gattgagctt agtgacttga       240
     gtgtaactta gattgttttt ttgagtttat gagacaaggc tgtaaatatt tttttttatt       300
     taatattgaa taatattgaa tacatttatt ttatttgaaa cttctccgat atactttata       360
     cttgctcttg gaacattaag acattacccg atttagacat tttcttgatt ttgatattga       420
     ccggatttga ctattgcatt taattgtata tattttttta tgtacattgt tgattgattg       480
     gtactttact tactttgaat attttgatat atatttttat tgattttatt ggttwattgt       540
     aatatagtaa acatgagtcg taaagtcgaa attaatcgtc tcgatagaga tgagcttact       600
     tatgagttag tatatagagg tattagtact gggactgttg aggaaatgag agctcgatta       660
     gctctggcaa gacaaatgga aaagtcaggk gaaagcttac actatccacc ttatccattt       720
     acatttcaag aagatgtcga tgcattgact aagaagttgg atgacatggc acagagagta       780
     gcaggctttg ctgataatag caaaagcgga tcctatatga agctacagac aaagttgaat       840
     catgtcttgg atagactgga ccgaatgatt tgtactacac cggaagagtt tagtatacga       900
     gcactactag ttggacaagc attcaacttg attatcgaac ttaaggataa atctactaaa       960
     gctgattgtc aagccgcacc tgtaccttta agcctttgcg ttttacagga taatcaacaa      1020
     ccgccgccta ttcagtacaa tgcaccagga cccagcactt cttttacagc ttctataccg      1080
     ccagctgcac ccatatctag tagtacaccg actgtacaga atattttctc aaatgccaag      1140
     cttatactac ctcataaatg gaatctaaaa tttagtggag atggtaaagg gatgtccgta      1200
     actgcattct tcgagagatg tgaagaattg agcagagccc gaaatgtgac cccagaaatg      1260
     ttacttgagt ctggaattga tctgtttgaa gggagagctt atgagtttta tcaagattgt      1320
     aggacagaag tacagacttg gagtgaactt gtagccagat ttaaggacga gtatcaacca      1380
     gttcgataca aggagaagct tatggaggag atcaaacgca gaacacaggg cccagacgaa      1440
     actattggaa catatatggc cattatgaat agatattttc atagactgca atgcccgatc      1500
     actgaagatg ccaagctcac catacttctc cgaaacattg ctcctgtcta tcgaaatcaa      1560
     cttggtgctt tcgagatatc cagtctagct cagttgaaga cactctgtag gaggatagag      1620
     caccgaatcc agaccgamga ctatgctcct ccactcagga aaaatcaatc attagaacca      1680
     gatttggctt atgttgatat aagtcaagac atcgatgaat tacacgtatc tccgccgcaa      1740
     accagtcagt caagtaacat tcactgtagt aaccagagag aagttatatg taaccgctgc      1800
     aagaagccag gacacagagc aattggttgt gcagaaccag caaaactgat ttgctatggt      1860
     tgtaagagag agggccacat gaaaagagac tgcaggttct cgggaaacgg aaacaggcgc      1920
     tcctaggtct tcggactaga agtagccgtg aaaaaccatc cgaagatttt gtacatattt      1980
     tagatttcgt tttaagccat gctcgtaatg atgagagacc gtatttagaa gtagatattt      2040
     taggacktaa gattttagga ttattagact ccggagcttc acgtacattt gttggacaac      2100
     caggatggaa gattttccag aagtttggaa tacagttgga tccatccctt aagacttcct      2160
     gtacagtagc gaatggtcag agagtgaata gtataggagc tattcaagta cctatgcgag      2220
     tgagagacag ggttaagatg atagatgtcg tagttgtgcc tgagttgcct catgtcttga      2280
     tattgggttc tgatttttgg atcaagatgg gaatagtacc ggacctacga cagaatgaat      2340
     ggcattttac ggataaccct gatgagatta actgcataga ggaacgagat acagttttaa      2400
     caccgaccga agaagtccag ctgaataact tactgaccga gtacaaggat ttaatgggag      2460
     atggtcttgg ttgcaccaac gctgtggagc acaaaatagt ttcgaccgca ccaccgatac      2520
     gacagagata ctaccgagtt tcaccagtca ttcaacagta catagacaag gaaattgacg      2580
     agatgttgag acaagacatt attgaaccta gtcaaagtcc ttgggcgtca cctgtagtct      2640
     tggtgaagaa gaagaataca gaaaagtaca gattctgtgt agactacaga aaattgaact      2700
     ccgtgacaga aagagacagc tatccattac cgctggtctc agagactttg gacaaattga      2760
     gcaacgccaa gtacttgtct agccttgaca tcaagagtgc ttattggcag gttccgattg      2820
     aagaagcatc tcgtccgtta actgctttta tttgccgccg aggattattc cagttcaaga      2880
     ggatgccatt tggacttcac aatgcaccag cgacatggca gagattgatt gacaacgttt      2940
     tgggagccga tcttgaacca cacgtgttcg tatatctgga cgatgttgtc attgtgagtg      3000
     agacatttga ggaacacatg gttatagtga gagaagtgtt cagacgcctg aatgaggcta      3060
     atataaccgt gagttgggag aaatgtcagt tttgccgtcc agatatgaag tatttgggat      3120
     atgtagtgga tcagcgtggt ttaagagtcg atccggataa ggtcaaagcc atgttggagt      3180
     tgccacgacc gaagagtgca accgaagtac gccgagtggt aggatcattt tcatggtatc      3240
     gaagatttgt gcctgagttt tcatctattg tagcacctat cacagcacta acgaagaaga      3300
     atcagaagtt tgtgtggaca gatgagtgcg agaagtcttt tatgaagata aaagaactgt      3360
     tagtagctgc accgattttg agctgtcctg attataccaa ggaatttgtt ctgcaaacag      3420
     atgcatctgg gtatggtatt gccgccgtac tcacacagcc gtcacctgaa ggagagaaag      3480
     taatctgtta cctgagccga tcactgacaa agcaagagag agtatactcc acgactgaga      3540
     gggaatgttt ggcattggta tacgctatag agaagctacg accatacttg gaagctgtac      3600
     cattcactgt gataaccgat cattttagct tgaaatggct acacactctc aaagaaccga      3660
     gtggtaggtt agcacggtgg gcagtcaagc tacagcagta tgacttcaag gtcatacatc      3720
     gtagtggaaa agacctggtc gtgccagaca tgctttctag agcagtaccg gtgattgacg      3780
     ccatagaacc atccagagac gattcaaccc gtccaaacgt caaagataaa tggtacaata      3840
     agatggtagc aaatgtgtgt caagaacctt tgaagtttgt caagtggaga tatactgatg      3900
     ggaagttatt taagtatgtc aagcaagact atccgacttt gtcaggagat acttggaaag      3960
     aagtcgtgcc gaaggaaaac agattacaga taatccgaga tgctcacgat ccaccgattt      4020
     caggacatat gggtgtatac aagacgtaca acagactttg cgagaagtat tactggccga      4080
     agatgcgtca agatgttgga tcttacgtaa agtcgtgctt gaagtgtgga gcacataaag      4140
     atgatcctcg aggcccaagt gatcagatgg tatcacactc gaaacctagc cgtccgtggg      4200
     agatgatttc aactgatctg gtaggaccat taccgagatc atacaagggt aataccttca      4260
     ttcttgttgt aacagattac ctcagcaagt tttcacttat ttttccactt cgtcgagcgt      4320
     caacgcagct tattattaac aggattgagg aacaagtttt cttagtgttt ggtgttccac      4380
     gagtactatt gtgtgacaat ggtcctcagt atcgtagtaa ggaattcaga aagtttacag      4440
     accagtacca gtgccgaatt aagttcaacg caaactacca ccctagagcg aatccgaccg      4500
     aacgacagaa caaaacattg aagactatgc tttccatcta cacgcatgaa aatcatcgtc      4560
     gttgggatca gaacattccg caaattgctt gcgctattcg gactgcctgt caagaaacca      4620
     caaagttatc accatacttc attaactttg gtagaaatat gtgtgtttct ggaaagacta      4680
     cgataatgat gctattgtta aggatgaaga tggtacacaa acactggaat gtagtagaaa      4740
     cgagctgttc cgcaagctgt atagcgacgt taaaaaccga cttgaagccg ccgctgagaa      4800
     gaatatctgc agatataatc ttaggaagag acatgaagaa tatgtaccag gacagttagt      4860
     gtggagaaga aactttgaat tgtcgaatgc tgctaattat tttagtaaga aattagcgcc      4920
     gaaatatata ggaccgttta ccatacaccg aagaatttca ccgtggacct atgaattgaa      4980
     ggacaagaat ggttatatac aaccaggatc ttggcactct aaagacttga aaccggcttg      5040
     gagtatgatt aactagttaa tcatcttgaa ggaagggggg gaat                       5084
//
ID   Gypsy-9_SiOr-LTR repbase;    DNA;    INV; 1892 BP.
XX
AC   .
XX
DT   25-NOV-2020 (Rel. 26.01, Created)
DT   25-NOV-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the rice weevil genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_SiOr-LTR.
XX
OS   Sitophilus oryzae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus.
XX
RN   [1]
RP   1-1892
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the rice weevil genome.";
RL   Repbase Reports 21(1), 334-334 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 1892 BP; 495 A; 353 C; 360 G; 679 T; 5 other;
     tgtaacagtc aaatttcctc gcaacgacct ctgtgtgcta gctcataaaa tatcgcaaat        60
     agctattatt tttgcatcat gtttactata attttattgt taaatattat tttatttaaa       120
     ttttacaatt atgcaacccg atatacaccg cgctatagag ccacagaata ttatcactgg       180
     atgccgccca gcattagaat ctttgtccat ctctgaatct ttggtatcac ttgtcccttg       240
     tcactgtcag atcaaatcag atgtttttgg atttatttat cctttgtttt ggttattgaa       300
     attttataat tatcagataa aatttcgtag ttaaattggt tatttttgat gtggatcgca       360
     gtgtgcaatt cgttcattta atggtgggaa tttgtgaata agttcgttca ttgaccggat       420
     atgaaatatg acaatgaaaa atattctaga acgtcgtttt ttatttatgc ctttttgtga       480
     gttggactag tcgagatata tagttctcta tctatatcct ggagggagat ttccggttga       540
     aatctgattt tgtgaaggaa atcgaatcct tgcatcactt cttgtgtact ccccggctga       600
     agagtgtcgt cgtgaagaac tggctgccgt ttcgtgaagc attccctgtt ggtgaatagc       660
     aggtcttcct agagaaggat taaggcttcc gaaacacctt tggtcagagg cgtggttgga       720
     ttttgatgat ctttatggac cgccgaccaa tttccgtaag ggattaaata gccaaatttt       780
     tccgaccgat attccgattc cacgtgccca agaagtcccc gacagttcca aggtatgcta       840
     taattcttct gcctatctaa gtcaatgctc aactgatttt tgttcatatt gtttctggtt       900
     ttcgactttt ccacgcccac gtggtgtaga aagttagttg agtgttatct ttcttagttg       960
     ttcgtaattg tagagcaaga agaccgatcc agaccgtata gcacagaaca gtccagaatt      1020
     ccatccgttc ctgttgcccg tgtgtagagt tacccgttgg acatcataaa ccctcgttga      1080
     ggtaaagttc agatttaatt agtccttctt tattaccttc attaactcct acacgttgtg      1140
     ctagtccttg ttctataatt gaggctcttt tctaagacaa ccaatattat ttagggtttt      1200
     ttatgttcac ctcttgaagt cctacacctg gccggcatcc gtacgtctgc tgacatccgt      1260
     gggctccagt gacagtacac cgagctgctg tgcaccgccg tagccaccct gtagctatac      1320
     accgtagctc agccggagga acttccgagt tgtttcaaga ttgtacatcg attagagtaa      1380
     gactgtttag atttagattt gctwtttgta aaccaccctg actgtatcta gtattaagtt      1440
     agmtaagggg gtttgacgtc ttagatttag tatagcttag atcattttcg tatttttagt      1500
     aattcttatc gattttaaat ttcttaacac atttcattca tttctttata aacttttaat      1560
     attttaataa attgcttgaa tatttttagt agtattattt gcagtctagt ctcatagtta      1620
     agttagagtc acttaagtwc aamkagttat agtaatattt gaagttcatg gtagttgcac      1680
     tcaacagttc gaggttagtg ttgaagtcta cttaatagta acatctttta tgccgagttc      1740
     atagagtata atctcgtggc gcccttttat taatatcttt gaaccccgac cacccggctg      1800
     ttaaaattaa aaagctagtg gcctctatgt aactcattca gattaagtaa actttgtgtt      1860
     ttattgaact tcgaataaga aagggcgtgg ca                                    1892
//
ID   Gypsy-9_SpEx-I repbase;    DNA;    INV; 5673 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SpEx-I.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-5673
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4068-4068 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           612..1802
FT                 /product="Gypsy-9_SpEx-I_1p"
FT                 /translation="MSDLIDIHTLIKNIKVNLLKLSKVKRTKKVLEQKYLE
FT                 ANGLYDKYITCRSELDIKVSKGYVKQEELKYILIICEEIESYYQRIQNFCL
FT                 ENEQSLSTVNTMTEFDMKTASSLLPVMTGEEECTKKLIDALEFYSQNIKKE
FT                 HESLLISFVLKTRISRHAKLRLASNYDTSADLIKDMKNNLLTKQSATALQL
FT                 ELLQSRQGSQSIEEFGKKLEDLFVELTISQADGKEDAYKMFRPVNEKLAIQ
FT                 RFTEGLRNGRLSTILTARDYSELKDVIRAAKDEERAHQGHSTSAETVFAAQ
FT                 HRGKYNQFYRGQSRGRVYIPNRNYYRSTPQPPPRNQVPVRTYYRGRARSFV
FT                 NNPRGRGRNYSQATNSGNYNRNNRHNTYLLDQSRNDIQGASTSNQNLDLEF
FT                 FRS"
FT   CDS           1789..5424
FT                 /product="Gypsy-9_SpEx-I_2p"
FT                 /translation="SFFDPNFILTCNYNNFVELSIFDSKYRMLVDTGASLS
FT                 VVKYETIRDWNIPLQPECITINGIGGKSTTDGYVYIPFSICGKEFKHKFYV
FT                 LKNLPCIQDGIIGQEFLKKYNCVLNYEHNTLTINECDSSVTTSLELGKLGK
FT                 NLFITVPPRCEKFFQVHCFESEACVVFPRELCDGVFIAGSICQPKEGKILI
FT                 QILNTRETEVQLSYFKPDIDRLSYYNMCAFEKENLSGERVRKLLSLIKLQH
FT                 LNKEESISIQNICAKFADVFYLPGDKLGTCNLYEQEIQLKPNSDPVYTKQY
FT                 RLPFSQRNEIENQIQKMLSNGIIEPASSEWSSPVLLVPKKLEDNKKSWRLV
FT                 VDFRKLNDRIMDDKFPLPNITDILDSLSGAIYFSQLDLTQAYYQAKLNSDS
FT                 RKYTAFTTPSGQYQMTRMPMGLKTSPSSFSRLMTVAMSGLNYDKCFIYLDN
FT                 LICFGRNLDIHNKNLLDILARLRKVNLKLNPDKCDFLRKEILYLGHVVSAD
FT                 GIRPDPEKIKVLNNYPVPKNADELKRFVAFSNYYRKFIPNFAEICIPLNNL
FT                 CRKNVTYNWDENCQKSFSMLKNCLVKPPVLQYPLFDDSNTFILQTDASGYA
FT                 IGSVLCNADRRPIAYASRSLNKAECRYPTIEKELLAIVWSVKYFRPYLYGR
FT                 QFIIETDHRPLVYLYNLTDPSSRLLKFRLLLEEYDYKVVYVKGRDNVAADA
FT                 LSRIEVTGEELRAMNEHIVSVLTRAKRRELEKNSDNHTSVANIPKNDWTDH
FT                 PRVVEMLKLPKDYTELVFVNEKEWMKVKKYVSLKNGDYAYSASDRTIYVKL
FT                 FTQSQRTRAVSVREMELFCADLKIDTLYIIKDENNVRIIKELAQYINKLPK
FT                 WSGPRLCVVKGVKKIVDDDTKRVILNDYHILPTSGHAGIRRMLNNIRKKYF
FT                 WSGLERDVTNFVMKCNKCQRYKYLNTVKEPMVITDCGNSAFDKVYMDLVGP
FT                 LPRDNNYNYILTLQCDLTKYVEAYPIAGKDARTVATTLVNNFILRYGIPRE
FT                 IVSDRGTEFVNSIMKEVCTILHINHLQSTAFHHQTLGSLENSHKHLTFYLR
FT                 MQVNSQTQEWSSWVSYWCFSYNTSVHSSTKFTPYELVFGKQCNIPSNLTTT
FT                 IDPIYNFDNYAVELKYRIQKSQMDAKTNLINSKIIRKSKYDSSINPITYKT
FT                 GDLILVKNENSNKLDPLYLGPFSVVKDISPNVVILVKGKEKTVHKNRTRLY
FT                 YE"
XX
SQ   Sequence 5673 BP; 1958 A; 862 C; 1123 G; 1730 T; 0 other;
     tggcgaccct gccatttaag gttcggtgtc ggattccggg ctcagtaaat cgcgcgtagt        60
     gacatgaggg aaaaaactat tgtattgcgt tattgttcgg acaaagttat aagtttggtg       120
     cgtaattttg attctgacaa tgggaaaacc acaaagtaaa gaagttgtga ttgcgcaaaa       180
     cgccgcaggt ggcgtaaatg ctgctgatgt tgcccaacta catcaaaatc agtcagtgac       240
     caattttata ctgggtgcga tgttggtcat cctgactatt ggagtttggt ttggagtata       300
     caagctgtat aaacgctgtc acgtagactg gatgcgagcg gagatagcca ggagtgcttt       360
     taggcgttct ggcccaaggc gtgacccaag gagcaaagag tccaatatcg agagcgttta       420
     gccttgagta aaactcggct agacaaaggc agacatcgga taagagagtc ttcatatgtt       480
     acggtaaaag tgaaaatgtg tgtgtgaagt gtttcaagtg tacggcatgg acagaggtat       540
     tttagttaag atttagaata ggtttcttta tgttgcccca cttcatttat ttttcatgag       600
     ttaagggtta aatgtctgat ttaatagata ttcatacatt aattaaaaat attaaagtca       660
     atttactaaa attaagtaaa gttaaaagaa caaagaaagt gttagagcaa aaatatttag       720
     aagcgaatgg tttatatgat aaatatatta catgtcgtag tgaattagat ataaaggtgt       780
     ctaaaggtta tgttaagcag gaggaattaa aatatatttt gattatttgt gaggaaatag       840
     agtcatatta tcaaagaatt cagaattttt gtttagagaa cgaacaaagc ctaagtaccg       900
     tgaacaccat gactgagttt gacatgaaaa ctgcatcttc tcttctacct gtgatgacag       960
     gagaggagga atgtactaaa aaattaatag atgctcttga attttatagc caaaacatta      1020
     agaaagagca tgaatcttta ttaatatcct ttgttcttaa aactcgcata tcccgacatg      1080
     ccaaattacg tttggcatct aactatgata cttccgcaga tcttataaag gacatgaaaa      1140
     ataatttgct gacgaagcag tctgccacgg cgcttcagtt ggagctattg cagtctcgac      1200
     aagggtccca aagcattgaa gaatttggta agaaacttga ggacttattt gttgaattga      1260
     ctatatctca agcggacggt aaagaagacg cgtataaaat gtttagacct gtaaatgaaa      1320
     aactagctat tcagcggttt acagaaggct tgagaaatgg tcgattgagt accattttaa      1380
     cggctagaga ttactcagaa ctgaaagatg ttatacgtgc ggctaaagat gaggaacggg      1440
     cgcaccaagg tcacagcaca tcggcggaga cagtctttgc ggctcagcat cgaggtaagt      1500
     ataatcaatt ttatagagga caaagccgag gacgtgttta tattccgaat cgtaattatt      1560
     ataggtcgac accgcaaccg cctccgagga atcaggtacc tgttaggact tattaccgag      1620
     ggcgcgcaag aagttttgtt aacaatccgc gaggacgtgg acgtaattac agtcaggcta      1680
     cgaattcggg aaactataat cgcaataaca ggcataatac ttatttgcta gatcagtcga      1740
     gaaatgatat tcaaggcgcg tcgacaagca atcaaaattt agatttagag ttttttcgat      1800
     cctaacttta ttttaacatg taactataat aactttgtag aattgtcaat attcgattct      1860
     aaatatagaa tgttagttga cacgggagcc tctttgtcag tggtgaaata tgaaacgatt      1920
     agagactgga atattcctct gcaaccagaa tgcattacca ttaatggtat tggtggcaaa      1980
     tcgaccaccg acggttatgt ttacatacca ttctccatat gtggaaaaga attcaaacat      2040
     aagttttatg ttctaaagaa tctaccttgt attcaagacg gtataattgg gcaagaattt      2100
     ttaaagaagt acaattgtgt tttaaattat gaacataaca cgttgacaat aaatgaatgc      2160
     gatagttcag ttacaaccag tttagaatta gggaaattag gtaaaaactt atttattaca      2220
     gtaccaccaa ggtgtgaaaa atttttccaa gttcattgtt ttgagagtga ggcttgcgtt      2280
     gtatttccga gagaattatg cgacggtgta tttattgctg gaagtatctg tcaacccaag      2340
     gagggaaaga tattaataca aattttaaat acacgtgaaa cagaagttca acttagttat      2400
     tttaaacctg acattgatcg tttatcttat tataatatgt gtgcattcga aaaggaaaat      2460
     ttaagcggcg aaagagttag gaaattatta tcgttgataa aattacaaca cttgaacaaa      2520
     gaagaatcca taagtataca aaacatatgt gcaaaatttg ctgacgtatt ttacttaccg      2580
     ggagataaat taggcacttg taacctttac gaacaagaaa ttcagttgaa acccaattcg      2640
     gatccggttt atactaaaca atatcggttg ccattttcac agcgtaatga aattgaaaat      2700
     cagattcaaa aaatgctttc caatggtatt atagaacccg caagtagtga gtggtctagt      2760
     ccagtgctac tggtacctaa gaaactagag gataacaaga aaagttggcg tttagttgtt      2820
     gattttcgga aattaaatga ccgcattatg gatgataaat ttcccctccc caacataacc      2880
     gatatattag attcactctc tggcgcaata tatttttcac agttagattt aactcaagcg      2940
     tactatcagg caaaattaaa ttcagacagt agaaagtaca cggcgttcac aacaccctcc      3000
     ggccagtatc agatgacccg tatgccgatg gggttaaaga caagtcccag ttctttctca      3060
     cgtttaatga cagtcgcgat gtcaggacta aattatgaca agtgttttat ttatttagat      3120
     aatttaattt gttttggaag aaatttagat atacataata agaatttatt agacattttg      3180
     gctaggctaa ggaaagtaaa tttgaagtta aatccggaca agtgcgattt tcttagaaaa      3240
     gaaatattat atttaggcca cgttgtatca gctgatggta taagacctga tccagaaaag      3300
     attaaagttt taaataacta tccagttcct aaaaacgctg atgaactaaa acgtttcgta      3360
     gcattttcta attactacag gaagtttatt ccgaattttg ccgaaatttg cataccatta      3420
     aacaatttat gtcgtaaaaa cgtaacttat aattgggatg aaaactgcca gaaatcattt      3480
     tctatgttaa aaaactgttt agtaaaacct ccggtattac aatatccttt gtttgatgac      3540
     agtaatactt ttattcttca aaccgatgcg tcagggtacg ctataggttc agttttgtgt      3600
     aatgctgatc gtaggccaat tgcttacgcc agccgaagtt taaacaaggc cgagtgcaga      3660
     tatcctacaa ttgaaaaaga attgttagcg atagtatggt ccgtcaaata ttttaggcct      3720
     tatctctatg gaagacaatt tattattgaa acggatcata ggcctttagt atacttgtat      3780
     aacttgacag atccttccag tagattatta aaatttcggt tattactaga ggagtacgat      3840
     tacaaagtgg tttatgtgaa agggcgtgat aatgtagctg cagatgcatt gtcgcgcata      3900
     gaagtgactg gtgaagaatt acgggcgatg aacgaacaca ttgtgtctgt acttactaga      3960
     gcgaagagac gggagcttga gaaaaattct gataatcata cttcggtggc taatattcct      4020
     aaaaacgatt ggactgatca cccaagagtt gtagaaatgt taaaactacc gaaggattac      4080
     acggaattgg tatttgtgaa tgagaaagaa tggatgaaag ttaaaaaata tgtgtcttta      4140
     aagaatggtg attatgcgta ttcggcgtca gatcgcacca tatatgtaaa actatttact      4200
     caatcacagc gtacacgagc ggtctctgtg agagaaatgg aattattttg tgctgattta      4260
     aaaatagata ctttatatat aattaaagat gaaaataacg taagaataat aaaagagcta      4320
     gctcaatata taaataaatt gcctaagtgg tccggacccc gcttatgcgt agtaaaaggc      4380
     gttaaaaaga ttgtcgacga cgatacaaag agagtaattt tgaacgatta tcatattctt      4440
     cctactagtg gacatgcagg gataagacgt atgttaaaca atattcgtaa aaaatatttt      4500
     tggagtggat tagagcgtga tgttactaat tttgtaatga aatgtaataa atgtcaacgc      4560
     tataaatatt taaatacagt aaaagagcct atggttataa cggattgtgg aaattcagct      4620
     ttcgataaag tatatatgga tctagtaggt cctttaccac gagataacaa ctataactac      4680
     attttaacac tacagtgtga cctcaccaaa tatgtcgagg cgtatccgat agcgggtaag      4740
     gatgcgcgta cggtggccac aacactggta aataatttta ttcttagata tggcattccc      4800
     cgtgagatag taagcgacag aggaaccgaa tttgtcaaca gcataatgaa agaggtatgt      4860
     acaattttac atataaatca tttacaatct acagctttcc atcatcaaac tttaggttca      4920
     ttagaaaata gccataaaca cttaactttt tatttgagaa tgcaagttaa tagtcaaaca      4980
     caggaatgga gttcatgggt atcctactgg tgtttctcat ataacacttc agtacattcg      5040
     agtacaaaat ttacgccata tgaattagta ttcgggaaac aatgtaacat accttccaac      5100
     ctcactacta caatagatcc gatttataat tttgataact atgctgttga attaaaatat      5160
     cgtatacaaa agtctcaaat ggatgctaaa accaatctta ttaattctaa aattattaga      5220
     aaaagtaaat atgatagcag tataaatcca ataacgtata aaactggtga tttaatattg      5280
     gttaaaaatg agaacagtaa caaacttgat ccattatatt taggtccatt ttcagtagtt      5340
     aaggacatat ctccaaatgt tgttatctta gttaagggaa aggaaaaaac tgttcataaa      5400
     aatagaacta gactgtatta tgaataagat tatattcctg taacactttt gtttgtaatt      5460
     gtacgatatc aaatgaagac ttgtaccgat gtcattgttt attgtttaga ttgtaaagtg      5520
     tactgaaata gatattggat actaacttac aattaactaa ttattataca atgaaaaatg      5580
     tataaaagct gaatctacac aattgaatga attatgttta aatttaaaat gtttttatag      5640
     tttacatttt ttttttcctt ttttgagagg gcg                                   5673
//
ID   Gypsy-9_SpEx-LTR repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   30-OCT-2020 (Rel. 25.12, Created)
DT   30-OCT-2020 (Rel. 25.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from the beet armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_SpEx-LTR.
XX
OS   Spodoptera exigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-127
RA   Kojima K.K.;
RT   "LTR retrotransposons from the beet armyworm genome.";
RL   Repbase Reports 20(12), 4138-4138 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 127 BP; 42 A; 22 C; 21 G; 42 T; 0 other;
     tgtgacgtag taagtaatca ttagtctata agaatataac attgtatctt ttaggtagag        60
     aggcattaat aaacgtaacg tgtaaccaac aacatcttgt ttgattctcc taagtcccgt       120
     ccttaca                                                                 127
//
ID   Gypsy-9_SpFr-I repbase;    DNA;    INV; 6271 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_SpFr-I.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-6271
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1848-1848 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..5270
FT                 /product="Gypsy-9_SpFr-I_1p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="MDMNRDVPRQRSLRTPSPGHQRYEGGSGGCPNYSQRP
FT                 SRSQRXSRSQRPSRSQRPSRSQRRSRSQQRRRSQQRSRSRSQQRSRSKRRN
FT                 HSQRRSRSQRRSRSQRRSCGQRHSRSQRCSHGPPRSHGPQCSSSSRRSRNP
FT                 RRSRSQHCSHGLRRSYSSQHNHSPHCKCGPQHSRSPSRKRSRQHDSSATRD
FT                 VTKVRDHSVSYSSKDIIDILKCIKNQPSTADALNHSNVVKNHKNILPDFDP
FT                 SSKNQRVDIWLKKVNECASVYGWDDKTTIHFAMQKLQGLAKTWYESLDTIL
FT                 FTWTEWQEKLAHAFPFEQNYGQSLEDMLKRKSKYNEPIEVYYYEKLALLNL
FT                 CDIVGKRAVDCIIHGLSDRTMKSSALALRCSHPEQLLQFLMSNKDSSNPLD
FT                 RFNVLAKNRFGSTPVGNNSGVKYNNKNNNSGDITDPFCFNCKERGHVFRKC
FT                 PKPLVRCNQCHRVGHKVEKCPAKAEDKNNKVANTQNTMCISLANSNSKFYK
FT                 DVLVNGIPTKAFIDFGSDVCLLARSTSVNLMLECGGVPNPIRGFGNNIVYS
FT                 LGTVNVELIIDGVSAHTNCQVMEDKFLDVPLLVGQTYTEQSHVFVLKTAET
FT                 LQFIDINSELPFNRTEIDNDRFVKIISIADLEIYGPAVVKAYTEPKLDGPV
FT                 IIENKVIGRPMFQYFVFGGVYTSKSGFINIYIMPISGYCSLYRGTIISRAS
FT                 SVQAVNRIMNELNDPVTDPIEISKVRIGDDVNDADKAKLLKLLNKYRDCFA
FT                 TNLKELGSTNVTQMDIELNNKRPIVYRPYRLSHKERDQVRDMVGEMMEAGI
FT                 IRESNSEYASPVILVRKKDGRMRMCIDYRMLNSVTVKEHYPMPVIEDEIAR
FT                 LSGQACFITLDLFSGYYQVPISEKSKPLTSFVTPDGQYEFNRMPFGLANAP
FT                 AVFQRMMNKVLGSARYSQATAYIDDVLIYGNCVQQCLERLENVLQLLQRAN
FT                 LTLNLAKCDFLKDKIDYLGYEISALGVRPGDKKVQSVIDFPRPSNVHTVRQ
FT                 FLGLVGYFRKFVMNFAQLAHPLNKLLKRDAVWTWTDEQENSFKTLKEKLID
FT                 RPVLAIYDPNGETELHTDASKYGVGGILLQRVKGSSDSFRPVAFYSRQTSP
FT                 EERNFHAYELETLAVVCSLRKFRVYLLGQNFKIITDCSALRSTFTKRDIIP
FT                 RIARWYLLLQEFQCTIEYRPGNKMGHVDALSRNPILDDGDNFNTDIDVTDQ
FT                 CPKVLAISGDDWLHTLQLGDSELNRIRDILTSDLDVEGLKQIRDNYIIKDN
FT                 KLYRVIDGDKEKLRWVVPKGARWQLCRLNHDDIGHFGVEKTLERIKSAYWF
FT                 PKMSKFVKKYVEACIECAYSKKTSSNEGYLHTISKVEVPFHTVHIDHLGPF
FT                 VRSKRGNCYILVLVDAFTKFTFIKPVRNTKSLVAIRVLDEIFCTFRVPDRI
FT                 ISDRGTCFTSHAFRRFCLDIGTKHVLNAVASPRSNGQVERYNRTILASLTA
FT                 QNLNHNEKDWDDKLGKIQWGINNTVNKTTGKRASEIMFGNCMNSEVDPRLN
FT                 VVRQEKGEDSLVKIREDVKDKIDEEQVKQKERYDKSRRPARVYSEGELVKI
FT                 SNTNFKNDGKSKKLLPQYTGPYRVISVLGNDRYRIVAIPGLSSSKHKRKTT
FT                 VAADRMQPWVHVAALDLNDSDNDSEIEEHDE"
XX
SQ   Sequence 6271 BP; 1905 A; 1127 C; 1404 G; 1834 T; 1 other;
     tatcagaagt ggtaagtaca tgctcacata cttttattct aaacaataac ggtagataat        60
     gttttaaatc gctatgaaaa tacctaaata attcgaagat tttgcattag aattagacgg       120
     tatttttatt ttttgtttgc gatctttgta gctcattttg ttaataatta aataacactg       180
     atgctaatct tatgctttta ttgtgctttg tgtgatattt gttcttaatt tattttaatt       240
     tttatttata taccataaca gctaagctac aagattacat tattagacat ttacattgtt       300
     gcttttctgt tcgagttgct gatatggaca tgaaccggga cgttccaagg caacggagtt       360
     tgaggacgcc ctcgcctgga catcagcgct atgagggtgg gtcaggcggc tgtcccaact       420
     atagccagcg gcctagccgt agccagcggc ntagccgtag ccagcggcct agccgtagcc       480
     agcggcctag tcgtagccag cggcgtagcc gtagccaaca gcgtagacgt agccagcagc       540
     gtagccgtag ccgcagccag cagcgcagcc gcagcaagcg gcgcaaccac agccagcggc       600
     gcagccgcag ccagcggcgc agccgcagcc agcggcgtag ctgtggccag cggcacagcc       660
     gaagccagcg atgcagccac ggtccaccgc gcagtcatgg accgcagtgc agcagcagtt       720
     cgagacgcag tcgaaacccg cgacgcagcc gtagccagca ctgcagccat ggcctgcgtc       780
     gcagctatag ctctcagcac aaccacagtc cgcattgcaa atgtgggccg caacatagcc       840
     gcagcccatc ccgcaaacga agcagacagc acgattcttc agcaacgcgg gacgtgacaa       900
     aggtcagaga tcatagtgta tcttattcgt caaaagatat tattgatatt ttaaaatgta       960
     tcaagaacca accgtcaacg gctgacgcac tcaatcattc taacgtcgtt aaaaaccata      1020
     aaaacatatt gcctgatttt gacccatcgt cgaaaaatca acgtgtggat atatggctaa      1080
     agaaagtaaa cgagtgtgcg tccgtttacg gttgggatga taagactacc atccattttg      1140
     cgatgcagaa gcttcaggga ctggccaaaa catggtacga aagccttgat acgattttat      1200
     ttacatggac cgaatggcaa gaaaaattag ctcatgcttt tccatttgaa caaaattatg      1260
     gccagtcctt ggaggatatg ctcaaacgca aaagtaaata taatgaaccg atagaagtct      1320
     actattatga aaagttggct ttattaaatc tttgtgatat agttggcaag cgggcggtcg      1380
     actgtatcat tcatggtctg agtgacagaa caatgaaatc gagtgctctt gcattaagat      1440
     gctctcatcc tgagcaattg ctacaattct tgatgagtaa caaggattct tcgaatcctc      1500
     ttgatcgatt caatgtactt gctaaaaata ggttcgggtc cacgcctgtc ggcaataatt      1560
     cgggtgtaaa atacaataac aaaaataata attcgggtga tattactgat cctttctgtt      1620
     tcaattgcaa ggaacgaggt cacgtgtttc ggaaatgtcc taagccttta gttcgctgca      1680
     atcaatgtca tagagtaggg cacaaggtcg aaaaatgtcc agcaaaggct gaggacaaaa      1740
     ataataaggt tgcgaatacc caaaacacaa tgtgcatctc tttggctaat tcaaattcaa      1800
     aattttacaa ggatgtttta gtgaacggca ttccaacaaa agctttcata gatttcggta      1860
     gtgacgtctg tcttttagct aggtcaacgt ccgtaaattt gatgcttgaa tgtggcggcg      1920
     tacctaatcc aataagggga ttcggtaaca atatagttta ttccttagga acagtaaatg      1980
     ttgaactaat tattgatggg gttagtgcgc atactaattg ccaagtaatg gaggacaaat      2040
     ttttggacgt accattatta gttggccaaa cttataccga acagtcgcac gttttcgtac      2100
     ttaagactgc agaaacttta caatttattg acattaatag tgaattgccc tttaatagaa      2160
     ctgaaataga taatgatcgt tttgtgaaaa ttatatccat cgcggatttg gagatttatg      2220
     gtcctgctgt ggtcaaagct tatactgaac caaagttgga cgggcccgtt ataatagaga      2280
     ataaagttat aggaagaccg atgtttcagt actttgtatt cggtggtgtc tatacatcta      2340
     aaagcggttt tattaatatc tatattatgc ccatatcggg atactgtagt ttgtatagag      2400
     gtacaatcat aagtcgtgct agtagcgttc aggcagttaa tcgcataatg aatgaactta      2460
     atgatccagt taccgacccc atagaaataa gtaaagtacg cattggagat gacgtaaacg      2520
     acgcggacaa agctaagtta ttgaaattgc ttaacaagta tagagattgt ttcgcgacaa      2580
     atttaaagga actcgggagt actaatgtca ctcaaatgga tatagaatta aacaacaaac      2640
     gtccaatagt atatagacca tacaggcttt cgcacaaaga gcgcgatcag gtgcgagata      2700
     tggtaggcga aatgatggaa gccggtatta taagagaatc caattccgag tacgctagcc      2760
     ccgtaatcct agtgcgtaaa aaggatggtc gaatgagaat gtgtattgat tatagaatgt      2820
     taaactcagt aactgttaaa gaacattacc caatgccagt catagaagac gaaattgcta      2880
     gactgtccgg acaggcatgt tttataacat tagacctatt ttctggctac tatcaagtgc      2940
     cgatatcaga aaagtcaaaa ccgttgacgt cgttcgtcac cccagacgga caatacgagt      3000
     tcaaccgtat gccgtttggg ttggcgaatg ctcctgccgt gtttcaacgt atgatgaaca      3060
     aagtgttagg atcagctagg tatagtcagg ccacggctta tatcgatgac gtgttaatat      3120
     atggcaactg tgtacaacaa tgtttggaaa ggctggagaa tgttttacag ctactacaaa      3180
     gagctaattt gactctcaat ctcgccaaat gcgatttttt gaaggataaa atcgattatt      3240
     taggttatga aataagcgca ttaggcgtta ggccaggtga taagaaggtt caaagcgtta      3300
     ttgattttcc tcgacccagt aatgtccata cagtacgtca gtttctcggt ttggtaggtt      3360
     attttagaaa atttgtaatg aactttgcac aattagcaca tcccttgaat aagctattaa      3420
     aaagggacgc tgtctggaca tggactgatg aacaggaaaa ctcattcaaa acccttaagg      3480
     agaaattaat tgatcgtccg gttttagcaa tttatgaccc caatggggaa actgaacttc      3540
     acacggatgc cagcaaatac ggcgtaggtg ggattttgtt acaacgcgta aagggaagta      3600
     gtgatagttt tagaccggtg gcattttata gtcgacaaac atctccagaa gaaagaaatt      3660
     tccatgcata tgagctagag actttagctg tagtatgttc actaaggaag tttagggtct      3720
     acctgttagg gcagaatttt aaaataataa cagactgtag cgccttgcgt tccacgttta      3780
     ctaagcgcga cataatacca cggattgcgc gttggtacct attactgcag gaatttcagt      3840
     gcacgataga atatcgacca gggaacaaga tgggtcatgt tgacgccttg tcacgtaatc      3900
     cgatcttaga tgacggggat aatttcaaca cagatatcga cgttactgat caatgtccaa      3960
     aagttctagc catcagcggc gatgattggc ttcacacgtt gcagttaggt gatagtgaat      4020
     taaatcgtat tagagatatt ctaacttcag atttggatgt agaaggactc aagcaaatta      4080
     gagataatta tattataaag gacaataagt tgtatcgggt cattgatggt gataaggaaa      4140
     agttacgttg ggtggtgcca aagggtgcaa gatggcagtt gtgtcggtta aatcacgacg      4200
     atattggtca ttttggtgtg gagaagaccc tcgaacgtat aaaaagcgcg tactggtttc      4260
     ccaaaatgtc gaaatttgtt aaaaagtatg ttgaagcctg cattgagtgt gcctattcta      4320
     agaagacctc ctctaatgag ggctatttgc acactatctc taaggtcgag gtgccttttc      4380
     acaccgtaca cattgaccat cttgggcctt ttgtgcgttc caaaagaggc aattgctata      4440
     ttttggtgtt ggtcgacgcg tttacgaaat ttacgtttat taaaccagta aggaacacaa      4500
     aatctttagt tgccataaga gttttagatg aaatcttctg tacctttaga gttcccgata      4560
     gaatcataag cgatcgcggt acgtgcttta cttcccacgc atttaggaga ttttgtttgg      4620
     atataggaac aaaacatgta ttaaatgccg ttgccagccc acgttcaaac ggacaggtag      4680
     agcgatataa tcgcacaata cttgcttcac ttactgctca aaatctaaat cataatgaga      4740
     aggattggga tgacaaatta ggaaagatac agtgggggat caataacaca gtgaacaaga      4800
     ccactggtaa aagagcttct gaaatcatgt ttggtaattg tatgaatagc gaagtagatc      4860
     caagattaaa tgtagttagg caagagaaag gagaggatag cttagtaaaa attagggagg      4920
     atgttaaaga caaaattgat gaagagcaag ttaagcaaaa agaacggtac gataaatcta      4980
     gacgtcctgc ccgtgtctat tcggaagggg agttggtcaa aattagtaat acgaacttta      5040
     aaaatgacgg taaaagtaaa aagcttcttc cccaatatac aggaccatat cgtgtcatat      5100
     cggtactcgg taatgataga tatagaattg tagcaatacc aggactgagt agcagcaaac      5160
     ataaacgtaa gacgacggtc gcagcagacc gaatgcaacc ctgggtgcac gtggctgctt      5220
     tggatttaaa tgattctgat aacgactcag aaatagaaga acatgatgag taatacaaac      5280
     taaatatatt aatcaaagat tttgttcagt agattaaaat gcagtattta ctatggaact      5340
     aatttaataa ttatgtgatt gtttttccag tttatctgcc atgtgattgg cattatagtt      5400
     tagcaaccat gtgattggtt tgccaggtta tttgccatgt gattggcatt atagtttagc      5460
     aaccatgtga ttggtttgcc agtttagttg ccatgtgatt ggcattatag tttagcaacc      5520
     atgtgattgg tttgccagtt tatctgccat gtgattggca ttatagttta gcaaccatgt      5580
     gattggtttg ccagtttagt tgccatgtga ttggcattat agtttagcaa ccatgtgatt      5640
     ggtttgccag tttagttgcc atgtgattgg cattatagtt tagcaaccat gtgattggtt      5700
     tgccagttta tctgccatgt gattggcatt atagtttagc aaccatgtga ttggtttgcc      5760
     agtttagttg ccatgtgatt ggcattatag tttagcaacc atgtgattgg tttgccagtt      5820
     tagttgccat gtgattggca ttatagttta gcaaccatgt gattggtttg ccagtttatc      5880
     tgccatgtga ttggtagaca gtttagcaac catgtgattg gtttgccagt ttactgtaat      5940
     gtgtttctat ttgtgccata agtttgtaat cagtttcttt cagatgatat tattttatta      6000
     ataagattgt gttcactact tgcccttaag tctaatttat taaatatatt ttaattatat      6060
     acaaaatata aaacctgtta tattgtatac tttcggacca ttgaacattg ttcgtagaga      6120
     gttgattaca aaattatatt cattatcatt tttgaaggta atttcgtttt ccaatttttg      6180
     tacttgttct gtaaaacttg tcgattggcc gagtgttagg ttcgctctga cttatgtgta      6240
     tgaggacata cacaaggtca ggatggacga g                                     6271
//
ID   Gypsy-9_SpFr-LTR repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   10-FEB-2021 (Rel. 26.04, Created)
DT   10-FEB-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   LTR retrotransposon from the fall armyworm genome - long terminal
DE   repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_SpFr-LTR.
XX
OS   Spodoptera frugiperda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Spodoptera.
XX
RN   [1]
RP   1-337
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the fall armyworm genome.";
RL   Repbase Reports 21(4), 1842-1842 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 337 BP; 90 A; 50 C; 79 G; 118 T; 0 other;
     tgttaggttc aataatattt atttctaaaa tcaactaatc acattattat tcgaatattt        60
     aaaaactggc aacactgccc caccacctgg tggtgggatt ttggaattaa tcggctcggt       120
     cgatcgacga ggcagtcggt gttaagggtt gctacggttc ggttgtccga acaggtagtc       180
     gttatactta cgtccttctg gtggattttg tgtgtgtaat tataattatc tattgtgtga       240
     gagttaagag tctgttgtac tggtaattgt tatagtgtag ggtaggagac ttgtaacaaa       300
     taaagtgata cttacctgca tacggagttt tattaca                                337
//
ID   Gypsy-9_TCa-I repbase;    DNA;    INV; 4066 BP.
XX
AC   chrUn_2;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_TCa_;
KW   Gypsy-9_TCa-LTR; Gypsy-9_TCa-I.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4066
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_2; Positions  136026  140091.
XX
CC   Positions [1455-1880] - Reverse transcriptase
CC   Positions [3064-3558] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           21..2351
FT                 /product="Gypsy-9_TCa-I_2p"
FT                 /translation="MPTDRYVTIQRDRLAQMTRHLDEEWQIDVVYGLLRHK
FT                 IRDKIPRSDIGSFNELLNRARAIEENEKESAAGPVKSQKTNGTTTVKANGG
FT                 KNRARCSFCRAFGHDVGECRKLKTNTTSGPPSAPNAIVPRVSTDIRCYGCQ
FT                 RPGVFRRNCPDCNPPTAPVSAPTTDPTGFCAINTSSQPRRRPTVNIEILGI
FT                 TGTALLDTAAGNSVASISLYQHLLRQGCTPRKEKVEATLADGGTRLMEVPT
FT                 VTTNVKLAGKITKTTFIVLSTSEDTKTLLGADFIEDSGVIIDLKRQQFYFE
FT                 QNPNEKVAFANDCATPTDEDIRTVFQATKVEFLSPLDPEYIANGYGPPPPD
FT                 NSSMIPSVITPGGTWNIYQAPGGADYMLQDANEMLMHYDQYHDEYQTDLFA
FT                 TIPYKTEICSLELRPTEGQFLTTTEKHKINRLVKEYRDLFAEFGPPTPYAT
FT                 HRINTGDSLPVAVPPYRLTCEKRKVLQMEIERLLQQGIIEECDSAWASPVV
FT                 MVPKANGTIRLCVDYRKLNAVTKPDVYPLPRLDDLLHATGKIGCITTLDLQ
FT                 AGYWQIQVEPGDRDKTSFICPFGLYRFTRMPFGLRNAPASFQRLMDKFKTG
FT                 IPDVPILAYLDDLIIISPDGHTHIRHLRSTFDQLRRFQLRINRNKCLIGCS
FT                 KVRYLGHRISPSGIAPDEKKVEAIKQIPPPRNLKQLQSFLQTCSWFRRFID
FT                 QFASVARPLSELTKKNASWKWGNAQDEAFTTLKEKLTTAPILRAADPTQPF
FT                 ILRTDSSAYALGAALLQGEGPDEETR"
FT   CDS           2299..4029
FT                 /product="Gypsy-9_TCa-I_1p"
FT                 /translation="MHSVRLFSRGRAPTRRPVEYASRLLTSSERNYSTTER
FT                 EALAIVWAISKFRGYVGENSTTVITDHQPLRWFMSLKTPTGRLARWALQLQ
FT                 PYNLVIEYTPGKANTIADFLSRPATEESSMICTVQIDLPARSDADIRNEQL
FT                 KDPEVKKILDELMSSNPEIAQPWSSRGYVTNRGVLYRYSQADDYEEAQLVV
FT                 PHHERLHIMKQHHDSPTGGHYGVDKTYSKIACRYYWPGMRRDVSDYLRTCI
FT                 ACQRYKASNLKPPGLLQTPVLQQRLEVISIDLFGPLPPSNCGEKWIFIVED
FT                 TCTRWVELFPLVDATAEMCAWTLLNDVCFRYGLPRRIISDNGSQFVSAIMQ
FT                 KLTFCLGISQSFTPVYHPEANPVERKNRDLKTQLAIQIGDNPHSTWPEKLP
FT                 TIRFAMNTTPCSSTSVTPAFLMFGRELRTIDDVTNDLRHIVESETFVAEAT
FT                 PKLLLLSDTWKKARETHEDKQDHRKEAADRTRRTAPEFQPGDLVLVQLHTL
FT                 SSSAKEFSSKLAPKRDGPYVILRRHGPTSYEIAAQDQPSQALGTYHSSQLT
FT                 PYRGLEKEVPPPVVPIRRRGRPRKHNVQNQ"
XX
SQ   Sequence 4066 BP; 1184 A; 1069 C; 902 G; 911 T; 0 other;
     ccgccttcca accagaagga atgcccacgg acagatatgt gacgatccaa cgggaccgcc        60
     tcgcacagat gacacgccat cttgacgaag aatggcaaat tgacgttgtg tacggcctac       120
     taagacataa aattcgcgac aaaattccgc gcagtgatat tggatcattt aacgaacttt       180
     tgaatcgcgc gcgagcaatc gaagaaaacg aaaaagaatc ggccgcgggc ccggtaaaat       240
     cccaaaaaac gaatgggacc acgaccgtta aagccaacgg cgggaaaaat cgcgcacggt       300
     gtagtttctg tagagcattt ggacatgatg ttggtgaatg tagaaaacta aagaccaaca       360
     ccacttccgg accaccttct gcaccaaatg caatagtgcc gcgagtgagt acggacattc       420
     ggtgttacgg atgccaaagg ccgggggtgt tccgacgcaa ttgtccggat tgcaatccac       480
     ctactgctcc agtaagtgct ccaaccacgg atccaactgg attctgtgca ataaacacaa       540
     gcagtcaacc tcggcgtcgg ccaacggtta atatagaaat cttgggcatc acgggaaccg       600
     cattgttgga caccgccgcc ggcaatagtg tggcaagcat aagcctgtat caacacctcc       660
     tccgacaagg ttgtactcca cgtaaagaaa aagtggaagc aactcttgcg gatggtggaa       720
     cccgcctgat ggaagtcccc actgtaacaa ctaatgtaaa gctggcaggc aaaatcacaa       780
     aaaccacttt tatcgtgctc tcaacctcag aggatacaaa aactttgttg ggagccgact       840
     ttattgaaga cagtggagtg atcatcgacc taaagcgtca gcagttttac ttcgaacaaa       900
     atccaaatga aaaggttgcc ttcgctaacg attgcgccac tcccaccgat gaagacattc       960
     gtaccgtgtt ccaagcaaca aaggtagaat ttctgtcacc cttggacccc gaatatattg      1020
     ctaatggata cggccctcca ccacccgata attcaagtat gataccgtcc gtaattactc      1080
     ccggaggtac gtggaacatt tatcaagctc ccggtggcgc cgactacatg ctacaagatg      1140
     caaacgagat gctgatgcat tacgaccagt atcacgatga ataccagacc gatctatttg      1200
     cgacgatccc ttacaaaacg gaaatttgtt cattggagct tcgccctaca gaaggtcagt      1260
     ttttaaccac cacggagaag cataaaatca accggttagt gaaggaatac agagacttat      1320
     ttgcggaatt tggtccacca accccatacg ccacccatcg aattaatacc ggtgacagcc      1380
     tccctgtagc agtacctcca tatcgcctga catgtgagaa acgaaaggtc ctccaaatgg      1440
     aaatagagcg actccttcaa cagggtatca tcgaagaatg tgatagtgcg tgggcgtctc      1500
     ccgtggtaat ggtacccaaa gccaatggga ccattaggct atgtgtggat taccgtaaac      1560
     taaatgctgt aacaaaacca gatgtctatc cacttcctag actggacgat ctgttacacg      1620
     caactggaaa gattggttgt attacaacgt tggacctaca ggccggctat tggcagatcc      1680
     aggtggaacc gggagatagg gataaaacat cttttatctg cccttttgga ctatatcgct      1740
     tcacacggat gccattcggt ctacgcaatg caccggcttc gttccaacgt ttaatggaca      1800
     aatttaaaac cggcattccc gacgttccca tactggcata cctggatgat ctcattataa      1860
     tctcccccga tggtcataca catattcgcc acttgagaag tacttttgac cagttacgac      1920
     gctttcaact acgcataaac aggaacaagt gcttgatcgg atgttcgaag gtacgatatc      1980
     ttggacatcg tatctctccc tctggcatcg ccccagatga aaagaaggtg gaagctatta      2040
     aacaaatacc acctccacga aacctgaagc agctgcagtc cttcttacaa acctgctctt      2100
     ggtttcgccg atttattgat cagttcgcat ccgtggcacg tccactaagt gaactaacca      2160
     aaaagaacgc ttcttggaaa tggggaaacg cacaagacga ggcattcacc actttaaagg      2220
     aaaagttgac aacagctcct atattacgag cagccgatcc aacccaaccg tttatcttac      2280
     gaaccgatag cagtgcttat gcactcggtg cggctcttct ccagggggag ggccccgacg      2340
     aggagacccg ttgaatacgc tagccgcttg ttaacttcat cggaacgcaa ctattcaacc      2400
     acggaacggg aagccctcgc catcgtatgg gccattagca aattcagagg atatgtgggg      2460
     gaaaactcaa ctaccgtaat caccgatcat caacctctgc gatggttcat gtcgctaaaa      2520
     actcctacgg gacggcttgc tcgatgggct cttcagctcc agccatacaa tctggtaatc      2580
     gaatatacac cgggaaaagc aaatactatt gccgactttt tgtcacgacc agcaactgaa      2640
     gaatctagta tgatctgcac agtccaaatt gatttaccgg ctcgctcgga cgccgacatt      2700
     cgcaacgaac aattaaagga cccagaagta aagaagattc tcgacgaatt aatgtcctca      2760
     aatcctgaaa tcgctcagcc ctggtcttct cgtggatacg tcacgaatcg aggtgtgttg      2820
     taccgctact cccaagccga tgattatgaa gaggcccaac tcgtagtacc acatcatgaa      2880
     cgtctccata ttatgaaaca acaccatgac tcccctaccg gcggccatta cggcgttgac      2940
     aaaacctaca gtaagattgc ctgccgctat tactggcctg gtatgagaag agatgtttcc      3000
     gactacctgc gcacttgtat tgcttgccag cgatacaagg cctctaacct gaaaccccca      3060
     ggactcttgc aaaccccggt acttcagcaa cgcctggaag ttatttcgat agacttgttt      3120
     ggacctctac ccccttccaa ttgcggagaa aaatggattt tcatagtgga agatacatgc      3180
     actaggtggg tggaactatt ccctcttgtt gatgcaactg ccgagatgtg cgcttggact      3240
     cttcttaatg acgtgtgctt tcgatatggc ctacctcgac gcataatcag tgacaacgga      3300
     tcacaatttg tgagcgccat aatgcagaaa ctcaccttct gcttaggaat aagccaatcc      3360
     ttcactccag tttatcatcc ggaggctaac ccagtagaac ggaaaaatcg ggaccttaaa      3420
     acgcaactcg ctatccaaat aggcgacaat ccacactcca cttggccaga aaagcttccg      3480
     accatacgct ttgctatgaa tacaacgccc tgttccagca ctagtgtcac tcctgcattc      3540
     ctgatgtttg gacgagaatt acgaaccatc gacgacgtca ctaatgattt acgacacata      3600
     gttgaaagtg agacctttgt ggccgaagcc acaccgaaac ttttactgtt gagcgatacg      3660
     tggaaaaagg ctagagaaac acatgaagac aaacaagatc atcggaagga agccgctgat      3720
     cgcacccgaa gaacagcccc cgagtttcaa cccggagatt tggttttggt ccaactccat      3780
     actctcagca gtagcgccaa agaatttagt tcgaaactgg ccccaaaacg ggatggtccc      3840
     tacgtaatcc tacgacggca tggccccact agttatgaaa ttgcagccca ggatcaacca      3900
     agtcaagcac tagggacata ccacagctct caactcacac cataccgcgg cctggaaaag      3960
     gaagtgccac cccctgttgt gcctattcgc cggcggggac gaccccgaaa acataacgtc      4020
     cagaaccagt gatcgggacg cttcacatgg ttctgagggg gagaac                     4066
//
ID   Gypsy-9_TCa-LTR repbase;    DNA;    INV; 114 BP.
XX
AC   chrUn_2;
XX
DT   22-FEB-2011 (Rel. 16.02, Created)
DT   22-FEB-2011 (Rel. 16.02, Last updated, Version -1)
XX
DE   LTR retrotransposon from the red flour beetle genome: long
DE   terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_TCa_;
KW   Gypsy-9_TCa-I; Gypsy-9_TCa-LTR.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-114
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from the red flour beetle genome.";
RL   Direct Submission to RU (21-FEB-2011).
XX
DR   Genome; chrUn_2; Positions  135912  136025.
XX
SQ   Sequence 114 BP; 28 A; 39 C; 24 G; 23 T; 0 other;
     tgtagcaata attagtacgg gtagttcata agcgctccac caatacccat ttggtagcgc        60
     cacttgcacc agcggccgca gccccactac cccaactagc cctttgcgca ggca             114
//
ID   Gypsy-9_TrNi-I repbase;    DNA;    INV; 5722 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_TrNi-I.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-5722
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 214-214 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..1660
FT                 /product="Gypsy-9_TrNi-I_1p"
FT                 /note="gag."
FT                 /translation="MSYPIKFLSLQKAELDYEVSVRGGTGGDSVSELRKQI
FT                 VKLSLTLPSEDILESHLDPISDLKAVNESLLKSHNNLVSLKSKFDKNLFFR
FT                 TETLLHHIYHRLNRINHSTSDVAETYKVCCTNFNSQYKEITSLKPKSQTTH
FT                 IASPTQAVPELSNVIVTCERKIHSELSKLKYSGKTCVRAFIQKVDEFIVSR
FT                 GIPQENIVSYLFEIFTDDALHWYRCIKNDTKTWDEIVVLLKQDFSQNDYDY
FT                 RLLAEIRARTQGELENITIYISIMRGMFSRLSKSLSEEDQLEILLHNIRPC
FT                 YASTLASSSDITDIRSLQKLCRNYENIQSRLKQFCEPPKVTSDTLAPEFAY
FT                 TKYASSKNSSNNNFNNKFNKPNYSNNYNYNKPKTTFEPNKSFNNHIQVNEI
FT                 GQESENMNKHRYCPRCRSNSHSLGSCKQPHFVICFKCGKKGVKFPDCPNCQ
FT                 TDQKN"
FT   CDS           1651..4881
FT                 /product="Gypsy-9_TrNi-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="SKKLSIKGCSKGNNSTNFDKTDWDNWLSTISKFFSCY
FT                 TVSTIHNNNIDFTRPYVSVSVKGKTITGLLDTGSAVTIMGNDAHKSFLAST
FT                 TTWNISQPLTFAAAGGQKLASIGFITLPFTFEKQTHNLDVHIIPEVKNSLI
FT                 LGMDFWRKFGLFPSYLNSILFLNPSEAQLAELASERSEYLQSYVHLSEDQK
FT                 VTADNIISQFREISYEERGLGRTALITHSIDTGDAAPIRQRYYRMSPEKQR
FT                 ILVEQLDEMLKDDVVEPAESPWSSPVLLTPKKNGELRFCLDSRKLNAVTKK
FT                 DAYNLPYISEILDNLRDAKYLSSLDLSKSFWQILIKQEDRCKTAFYIPSRG
FT                 TYQFKSMPFGLTNAPATQQRLVDALFYGPEFEHRVFVFIDDIIIVSSSFEQ
FT                 HISLLLLVLNKLKTANLTINLKKSQFFRDKLKYLGYIVDANGLHADPEKVE
FT                 AIKNYPTPTNRKEVRRFLGAASWYRRFIPNFSSLASPLNKLTSQSKKAPPF
FT                 LWSTEAHIAFTKLKDCLVSASVLSCPDYSQPFQIHTDASDYGIGAVLTQDI
FT                 KGEERVIAYMSKSLSKQERNYSATEREALAVLLAVEHWRCYVENGQKLTVF
FT                 TDHSALKWFLKLNNPTGRLARWGVRLSAYNLEIKHRRGSENVVPDFLSRST
FT                 PVSAIDSDHSTNNAIPKTSDSWYLSVYNGCLNSPTSFLDYQVSENKLFRFK
FT                 KSLNPLTKEFEWKEVVPLEDRTNIIIKNHAEPICGHLGIFKTFKRLSLKYY
FT                 WPGMYADVVKAVTSCDTCIAHKHQNHATLGHMGKPKSCYRPFQMLSIDLVG
FT                 PLPVTKKQNSYIFVVTCCFSKYCLLFPIKRANADIISRILEDNVFLVHGIP
FT                 FTIILDNGKQFVSATLKNLIAKYNIPNLHFTPKYSPHINTVERYNKTIMTA
FT                 LSTFINNDQRTWDLIIPKIQFAINSSVNEVTGFTPSFLVYGRELVSCGTHY
FT                 RDCKFDSDIIFEPRDSYAENLGYLATIFNKVQGALLQAHTRNCQSFNLRRK
FT                 PAEYNLGDIVWKRTFYQSDKDKYFNKKLAPKFIKCKVVNKKSPLVYELADM
FT                 SGKSIGEWHIKDLKQINYKE"
XX
SQ   Sequence 5722 BP; 1835 A; 1128 C; 994 G; 1765 T; 0 other;
     gtggcgccca ggaaggtaga atatcgagcc gtgttgagtt tttgtgagct tatcattttg        60
     tagtatttct tggtgtcggc tttcttacag ttgtgctaaa attaatcaca ggctaccaat       120
     tgtgaatttt ttgagtacct accctcatta tatttttatt gtatatttta atttttcaca       180
     tattggtaga ctgcctaact actgattttg catttatttt tgtgttgtcc tattttttta       240
     attttgttgt aactgtgtat cgtgttttat acgttttgca acacacattc cgcggcgttt       300
     tttttataag atgtcttatc ctattaagtt tctgtcgcta caaaaagctg aactggacta       360
     cgaggtatct gttcgtggtg gtactggtgg tgactccgtt agcgaactta ggaaacaaat       420
     agttaaatta tccttaacat taccctctga ggacatctta gagtcacatt tagatccaat       480
     ttcagatttg aaagcggtta atgagtcctt gttaaaatct cacaataatt tggtatcgtt       540
     aaaatccaaa ttcgataaaa acttattttt tcgcacggaa accttacttc accatatcta       600
     ccatcgcttg aatcggatta atcactcgac ttccgatgta gcagagacat acaaagtatg       660
     ttgtactaat tttaactcac aatataagga gataacttca ctaaaaccaa aatctcaaac       720
     tacccacatt gctagtccga cacaggcggt acctgaactg agtaacgtga ttgtcacttg       780
     tgagcgcaag attcattccg agttaagtaa attaaaatac tccggaaaaa cctgcgttag       840
     agcattcatt caaaaagtgg atgaatttat agtaagtagg ggtatccctc aagaaaatat       900
     tgtgtcgtac ttatttgaaa tttttaccga tgacgctctg cattggtata ggtgtattaa       960
     aaatgacact aaaacttggg atgagatcgt agttttacta aagcaggatt ttagtcaaaa      1020
     cgactacgac tataggttgc ttgccgaaat acgtgctcgt acgcagggtg aactagaaaa      1080
     cataactata tatatttcta ttatgcgtgg tatgttttcg agactgagca aatctttatc      1140
     tgaagaggat cagttagaga tcttactgca caatattagg ccctgttatg caagtactct      1200
     agcgtcttca tctgatatca ctgatattag aagcttgcag aaactatgta ggaattatga      1260
     aaacatacag tctaggctta aacagttttg cgaacctccc aaggttacat ctgacacttt      1320
     agcacctgag tttgcctata caaagtacgc tagttctaaa aattctagta ataataattt      1380
     taataataaa tttaataaac ctaactactc taataactat aattataata aacctaaaac      1440
     tacttttgaa ccaaataaat catttaacaa tcatatacaa gttaacgaaa taggacaaga      1500
     gtctgagaac atgaataagc atagatattg tccaaggtgt agatctaatt cacactcttt      1560
     aggttcatgt aaacagccac actttgttat atgtttcaaa tgtgggaaga aaggcgttaa      1620
     gtttccagat tgtcctaatt gccagactga tcaaaaaaac taagtatcaa gggttgtagt      1680
     aaaggtaata atagcacgaa ttttgataag actgattggg ataattggct tagtactatt      1740
     tctaaattct tttcttgcta taccgtttct acaatccata acaataatat agactttaca      1800
     cgcccttacg tttcagttag cgttaaaggt aaaactatta ctggactact tgacacaggt      1860
     tctgccgtca ctataatggg aaacgacgcc cataagagtt ttctagcttc tactaccaca      1920
     tggaacatta gccaaccttt aacattcgcg gcagcaggtg gacaaaaact tgcgtctata      1980
     ggttttatta cattaccttt cacttttgaa aaacagactc ataatttgga cgtacacatt      2040
     ataccagaag ttaaaaattc cttaattcta ggcatggact tttggcgtaa gtttggttta      2100
     tttcctagtt acttaaactc aattttattc ctaaacccat cagaggctca attagctgaa      2160
     ttggcatcag agagatcgga atacctacag tcttatgttc acctgtcgga agaccagaaa      2220
     gtaacagcag ataatatcat ctctcaattc cgggaaattt catacgagga acgaggtcta      2280
     ggtcgtactg ccttaataac acattccatt gacactgggg atgctgctcc cattcgtcaa      2340
     aggtactata gaatgtcccc ggaaaagcaa cgcatattag tggagcaact tgatgagatg      2400
     ctaaaagatg atgtagttga gcctgctgaa agcccatggt catcccctgt actactaaca      2460
     cctaagaaga atggtgagct taggttttgc cttgacagta ggaaattaaa tgccgtcact      2520
     aaaaaagatg cctacaattt gccctatata tccgagatac tcgacaacct acgcgacgcc      2580
     aaatacctat caagtctaga cctgtcaaaa agtttttggc aaattctaat taagcaggaa      2640
     gacaggtgta agaccgcgtt ctacattccg tcgcgaggca cttatcaatt taagtctatg      2700
     ccgttcggtc tcactaacgc accggctacc caacagcgct tggtagatgc tttgttctat      2760
     ggaccggaat ttgagcatag ggtcttcgtc ttcatagatg atataattat tgtctcgtct      2820
     tcctttgagc aacatatttc tctattacta cttgtgttaa ataaactaaa aactgcgaat      2880
     ctaactataa atctaaagaa aagtcagttt ttcagagata aactgaaata tctaggttat      2940
     atagtggatg ctaacggctt acacgctgac cctgaaaaag tagaagctat taaaaattat      3000
     cctaccccga ctaataggaa agaagttcgt cgcttcttag gcgcagcttc ttggtaccgc      3060
     aggttcattc ccaacttcag ttccttggcc tcaccattga acaaattaac ctcacaaagc      3120
     aagaaagctc ccccattttt atggtctacg gaagctcaca ttgcctttac taaactaaag      3180
     gactgcttag tgtccgcgtc tgttctttca tgcccagatt attcccaacc ctttcaaatt      3240
     cacaccgacg cgagtgacta cggtatcggt gcagttctga ctcaggacat aaaaggcgag      3300
     gaaagagtca tagcatacat gagcaagtca ttgtccaaac aagaacgcaa ctatagtgca      3360
     acagagcgcg aagcccttgc agttctttta gcagttgaac attggcgttg ctatgtagaa      3420
     aatggccaaa agctaacggt attcacggat cattctgccc ttaaatggtt tttaaaatta      3480
     aataatccta caggtcgttt ggctcgctgg ggtgttcgac tgtcggcata taatttagaa      3540
     ataaaacacc gtcgtggttc agaaaatgtc gtacctgatt ttctatcgcg ttcaactccc      3600
     gtatcagcca ttgatagtga ccattctacc aataatgcta tacccaaaac ttcagattcg      3660
     tggtatctaa gtgtttataa tggttgctta aattctccaa cttcctttct tgattatcag      3720
     gtatcagaaa ataaactttt tcgttttaaa aagagtctta atccactaac caaagaattt      3780
     gaatggaaag aagtggtacc tcttgaggat agaactaaca ttataattaa aaatcacgct      3840
     gagccaatct gtggccatct tggtattttt aaaactttta aacgactatc actaaaatat      3900
     tactggcccg gtatgtatgc ggatgtggtc aaagcagtaa cttcttgcga cacttgcata      3960
     gcccacaaac accaaaatca cgcaacgctt ggacacatgg gtaaacccaa atcttgttac      4020
     agaccttttc agatgcttag tattgatctt gttggacctc taccggttac caagaaacaa      4080
     aattcttaca tatttgtcgt aacctgttgt ttttcaaaat actgtttgct tttccctatt      4140
     aaacgagcta atgctgacat aatctccaga attcttgaag ataacgtatt tttggtacac      4200
     ggtatcccat ttactatcat actcgataac ggcaaacaat tcgttagcgc tactctaaag      4260
     aacttaatag ctaagtacaa cataccaaac ttacatttta caccgaaata ctcgcctcac      4320
     ataaataccg ttgaaaggta taacaaaact ataatgactg ctctgtcaac tttcataaat      4380
     aacgatcaac gtacttggga tttaattata cctaaaatcc aatttgctat taacagctcc      4440
     gtgaatgaag taactggttt cacgccttcc tttttagtat atggtcgtga actggttagt      4500
     tgtggtactc attacaggga ctgtaaattc gacagcgata tcatatttga accacgtgat      4560
     tcgtatgctg aaaatctagg ttatttagct actatcttca acaaagtaca aggagctctt      4620
     ttgcaagccc atactagaaa ctgtcagtca ttcaatttac gaagaaaacc tgccgaatac      4680
     aatttaggtg atattgtctg gaagcgaact ttctaccaaa gcgacaaaga caaatatttt      4740
     aataaaaaat tagcccctaa attcattaaa tgtaaggtag tcaataaaaa atcaccacta      4800
     gtttatgaat tagctgatat gtctggaaaa tctatcggag aatggcatat taaagatctg      4860
     aaacaaatta actacaaaga atgacaaaac ttagctatat atggtacatt gcttggaaca      4920
     actgaaaact aaaatatttt aaataattta atttaaacta aaactacttt ttacataact      4980
     tatccctaaa ataaataaaa atctaaatct aatgtcgcct atctagtgcc taaaattggg      5040
     ctaaaatgga ttactacctt aactatatac aatacagata cagttaccta tacactgcca      5100
     ctacatatga accattcctt ctatttacta tttccttatt tacactgttg gtctacccca      5160
     attgtcttac aagacgatgg tctaccccat tcatgcttct atattattac tatcggccct      5220
     acagccatag taagaaagca atcttggttc taccccaatg atttctttta ttggtatcat      5280
     ggccctacac cattgataac ttatacacat cttcctacac attacactct acacagcggt      5340
     ttgcaactgt ttaaataagc ctatgcagga gcggctggtg actccaaaag taagccaaaa      5400
     ccacacactt cctatctata ttaatatctg ccattttatt tatctatcat ccattggtta      5460
     tatgtagact gcactgcata ataaactctc ataagatcta cgttcggttc gcgtgggtgt      5520
     tttgcgttat atgcagaata ctctgaatga tagcgtgcgg aaggcacagg atctaaagtg      5580
     tcagctgctg attaaaagat gaatgaataa aagaggatgg gtgaaaggga taggaatgat      5640
     agtgtagcgt gaaccaaatg ctttcagtag cagtagcagc ggattttccc taggaaaaat      5700
     cctaccctaa agaggggggt ac                                               5722
//
ID   Gypsy-9_TrNi-LTR repbase;    DNA;    INV; 1368 BP.
XX
AC   .
XX
DT   10-DEC-2020 (Rel. 26.01, Created)
DT   10-DEC-2020 (Rel. 26.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the cabbage looper genome - long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_TrNi-LTR.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-1368
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the cabbage looper genome.";
RL   Repbase Reports 21(1), 254-254 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1368 BP; 363 A; 327 C; 241 G; 437 T; 0 other;
     tgtaacgttg tacgttttta tgctctaatt tcttcgaatc tatagatact tacgagtgta        60
     tcgagttgaa attctataaa acactcgtct ttatattgga acgcgccgca cgcccgaact       120
     cacgtctcgg aaaccggttc cgttggccga accccttcca ccgttcaaac tgcgagcgac       180
     gcgtcacgcg agtcaccgat gccagtgcga ccggggaaag gattattacc gacctaccgc       240
     gaacagctga gcgcgtactc tcgagttcta ttttttcaca gtgaggccct aataccggcc       300
     acttaaaata taaaacttta aatatatcta ctaattaaat tcagtgaacc ccatatcggg       360
     tgagtgttgc aaaacgttta caaataatcg ctagatttaa gtaatgcatg acttgctaaa       420
     attatcattg tgctacgatt aattgctttt aatactttca ccatcatagt gttgcaaacc       480
     tttagtagat atttaaactg ttatctgtcg tgttctaaaa tgtaattgac ctatagtttt       540
     aaatattgtg tttaccgact ttacaatttg cattgacctt tggaacggtt aaccttggcc       600
     gtgtcatgac ggtcaaccat tttaaactta caacgacatt tttattatag cacatcgttc       660
     tcttaaattc gaaatctaat aacactgcta ttaatttatt gcataagatg tattaattat       720
     gaaactactt tcataatagc tgttattcat cttacaatta acaacgtcat gtagttttgc       780
     tagctaatgt accacgctgc ctagactgcc ccatctcgat agctacttag tgctgaatca       840
     ccgctttcca ttttagtatg ttgtgttgct aacgggatgc cgcagtaaca gactggattc       900
     ggtcaatttc taaaattacc aattaccgaa ttccagggtt caagttcaag tccaagttca       960
     agtcaagttg agtctccagc ttcaagcctc cagttccagc tcaagtactt gtaagccacc      1020
     gaggctgcgt tttctactct tcttcttcct cttcgttcct gcctaatgtc cttgacgccg      1080
     tcatctatcg accgtcagga ttagaaacgt tcctgccgaa gaccttgcct gcccttgagt      1140
     ctccgtcggt cagctgctac ccgggaagga gaccgcggac ccctacacat ccggatactg      1200
     aggcaggata gtggtgtttc tcttgcgacc ttcaattcct cgcgcgctcg atattttaaa      1260
     accaccccca gctcaaccga ctatttgttt tttttaagaa taaattgtta atctaattgt      1320
     aaccattttt ttttctcaca agcctatctg cctagaacct acgttaca                   1368
//
ID   Gypsy-9_TrVa-I repbase;    DNA;    INV; 4196 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, internal
DE   portion consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_TrVa-I.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4196
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 255-255 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..1035
FT                 /product="Gypsy-9_TrVa-I_1p"
FT                 /translation="MPSDDQELQKKLETLEAQLELLSSRLPGKQSKDHAAQ
FT                 EGENSQNGNDSVNRVAIKLPPFWPDEPELWFIQVEAQFTLAKINQEATKYT
FT                 HVVAQLEGRFANEVKDILRDPPQENPYTHLKNELIRRLSLSEAQRVRQLIS
FT                 QEELNGQSPSQFLRRLQSLAGSTRVDDGFMRTLWLQRLPAHTQAILQAQPA
FT                 DQSLDQLAQIADRIIEVSQPAFLPPASHVTSAAVTDCNAIKNTDNLAEAIQ
FT                 NLTREFQSLKSALTSRSRERSQSRGRNFSRRRNFSPSDNQKDDGLCFYHRT
FT                 YGSRARNCREPCKASTNLNGSR"
FT   CDS           999..4169
FT                 /product="Gypsy-9_TrVa-I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="TLQGFNKPQRQPLMAATDCHSSSSRLYITDKNSQQRF
FT                 LVDTGSDLCCYPRRLLRGRFSATNYELSAANNSSIKTYGCTPLRLDFGLRR
FT                 DFTWRFVIADVALPILGSDFLAHFQLLPDCFHKRIIDGRTGLTTQCSRANV
FT                 SQPSIKTLAIASKTPFHEILAEFPELVRPSGTPREIRHSTRHYIRTTPGPP
FT                 VSCRPRRLAPDRLQIAKSEFDLMLSEGIARRSESSWSSPLHMVPKKTDGWR
FT                 PCGDYRALNARTIPDMYPVRHIHDFAHQLRGCKIFSVIDLVKAYTQIPVNT
FT                 GDIPKTAITTPFGLFEFLFMTFGLRNAGQTFQRFIDEVLTGLDFCYAYIDD
FT                 ILVFSRNEAEHQEHLRILFRRLSDYGILVNAAKSVLGVPVVTFLGYEVSEK
FT                 GTRPLPDRVAALRNFPRPSNARGLRRFLGMINFYRRFLPHAAEYQAPLISA
FT                 VASLRGSQPVPWTPELDQAFNRCKEKLADATLLAHPDPNAPLGLFTDASLT
FT                 SVGASLQQFVHNSWQPLAFFSHKLTPKQTEWPPYYRELFAVYTAIQHFRHI
FT                 LEAQHFTIYTDHKPLTYAFQQRRDKLPPVQLNQLSFIAQFSTDIKYVEGPS
FT                 NVVADAFSRVEAISQPFSINLEALAASQEQDDELQHLLTSDTALHLRRMTI
FT                 PDSHTELYCDTSTGQPRPFVPSAHRRQIFDALHSLSHPGTRATARLVASRF
FT                 VWPRVQQDCRAWARACQACQRAKVSRHVQAPLGTFVPPSARFQHVHIDLIG
FT                 PLPPDGPYRYCLTAIDRFTRWPEVCPLQSITAEEVAQALLTCWISRFGSPS
FT                 RITTDQGRQFESDLYRALGRTLGIERLRTTSYHPCANGMIERFHRHLKSAL
FT                 MCHPNMTWLQALPLVLLGIRASIKDDLQASPAELVYGEPLRIPGELVAPAS
FT                 NEQSTNATDFVIQLRQQMSRLRPVPASRHAKPDVFVFKDLKTCTHVFLRDD
FT                 TVRKSLQPPYSGPHQIIARDDKTVTISFRGKELRVSIDRVKPAYILASDPV
FT                 PTLDNKNLRKPATQPTNPGMTSPQTEQPTIPMTTGYTTRFGRQVRFRLPPG
FT                 "
XX
SQ   Sequence 4196 BP; 1054 A; 1342 C; 844 G; 956 T; 0 other;
     ttggtgacct acgacgcgaa tacgctacgt atttttgcgc aagttctcgc acgttattac        60
     ggacattttt cacgcatccc gtaaacatcg aagatgcctt ccgacgatca ggaacttcag       120
     aagaaactcg aaacactcga agctcaactg gaactactat catcacgact tccaggcaaa       180
     caatccaagg atcacgcagc acaggaaggg gaaaactctc aaaacggcaa cgactcagta       240
     aatcgggtgg ccattaaatt accaccattt tggcctgacg aacctgaatt atggttcatt       300
     caagtcgaag ctcaatttac cctggctaaa atcaatcaag aggccacaaa atacactcac       360
     gttgtcgccc agctcgaagg aagattcgca aacgaagtga aggatatttt gcgcgaccca       420
     ccgcaggaaa atccatacac tcacctgaaa aacgagctca ttcgacggct ctctttgtca       480
     gaggcccaac gcgtccgcca acttattagt caagaagagc tcaatggcca atctccatcc       540
     cagtttttgc gacgtctaca atctttagct ggaagcacac gcgtagacga tggatttatg       600
     cgcacgctct ggttacaacg actacctgcc cacactcagg ctattttaca ggcacagccc       660
     gcggaccagt ctctcgatca gctggctcaa attgccgacc gtatcattga agtctcgcaa       720
     ccagcgtttc ttccccccgc ttcccacgtc acttcagcgg ctgtcaccga ctgcaatgca       780
     ataaaaaaca ccgacaatct agccgaagct atccaaaatt tgacacgcga atttcaatct       840
     ttgaaaagcg ccctgacctc tcgcagccgc gaacgctcgc aatctcgcgg tcggaatttt       900
     tcccgtcgac gcaatttttc tccttctgac aatcaaaaag atgacgggct ctgtttctac       960
     cacagaacct atggcagccg ggcccgaaat tgtcgtgaac cctgcaaggc ttcaacaaac      1020
     ctcaacggca gccgttaatg gcggcaaccg actgccattc tagctctagc cgcctctaca      1080
     tcaccgataa aaattcgcag cagcggttcc tcgtcgacac aggttccgat ctatgctgct      1140
     acccgcggcg cctcctccgc ggccgtttca gcgcaaccaa ttatgaactc agcgctgcca      1200
     acaactcatc aataaaaaca tacggctgca ctcctttacg actcgacttc ggtctccgcc      1260
     gcgattttac atggcgcttc gtaatcgccg acgtggcctt acctattctg ggctcggact      1320
     ttttagccca tttccagctt ttacccgact gctttcataa gcgcatcatc gacggccgaa      1380
     ctggattaac gacgcaatgc tctcgagcaa acgtctcgca gcctagtatt aaaaccctcg      1440
     ccatcgcaag caaaactccg ttccacgaaa ttctagccga atttcctgaa ctcgtgcgcc      1500
     cctccggcac cccacgcgag atccgccact caaccaggca ctacattcgg accactccgg      1560
     gcccgccagt gtcctgtcgc cctcgacgtc tcgctcccga tcgccttcaa attgcgaaga      1620
     gtgagttcga cctaatgcta tccgaaggca tagcccgacg ctccgaaagc tcctggtcct      1680
     caccgcttca tatggtgccc aagaaaacgg acggatggcg accttgcggc gattaccgcg      1740
     ctttaaatgc gcgaacgatc cccgatatgt accccgttcg gcacattcac gatttcgccc      1800
     atcaactccg gggttgcaaa atattttctg tgattgacct agtaaaagct tatacgcaaa      1860
     tacccgtaaa cacaggagac atcccaaaaa cggccatcac gacacctttt ggacttttcg      1920
     aattcctttt catgacattt ggcctccgca atgccggtca aacctttcaa cggttcatcg      1980
     atgaggtgct caccggttta gatttttgct acgcatacat cgatgatatt ttagtattct      2040
     cacgcaacga agccgaacac caagagcact tacgcattct cttccggcgc ctttctgact      2100
     acggcatttt agtcaacgcc gcgaagagcg tccttggtgt ccccgtagta acattcctcg      2160
     ggtatgaagt atcagaaaaa ggcacccggc ccctccctga ccgagtggcc gctctccgta      2220
     attttccacg cccttccaat gcgcgcggcc tgcgtcgatt cctgggtatg ataaacttct      2280
     atcgtcgttt cttaccccac gccgccgaat atcaggcccc tctcatatca gctgtcgctt      2340
     ctttacgcgg ttcacaaccc gttccatgga ctccggagct cgaccaagca tttaacagat      2400
     gcaaagaaaa attagcggac gccacgctac tggcacaccc cgacccaaac gctccgctcg      2460
     gacttttcac cgacgcttct ctgacatcag ttggcgctag tctccaacag ttcgtacaca      2520
     actcgtggca acctttggct ttcttctctc acaaactcac gccaaaacaa acagaatggc      2580
     cgccgtatta tcgtgagctg tttgcagttt acacggccat tcaacatttt cgacacatat      2640
     tagaagccca acattttaca atctatacag accataagcc acttacatac gccttccaac      2700
     aacgccgcga caaactacca ccagtacagc tcaaccagtt atcatttatc gcgcagttct      2760
     ctaccgacat caaatatgtc gaaggtccat ccaacgtagt ggctgatgca ttttcacgag      2820
     ttgaagcgat ttctcaacca ttttccatca atttggaagc tctggcagcc tctcaggagc      2880
     aagacgacga actgcaacac ctcctaactt cagacacggc tcttcacctt cgacgcatga      2940
     ctatcccaga ctcacatacc gaactatact gcgatacctc gacaggccag ccgcgtcctt      3000
     tcgtcccttc agctcatcgt cggcaaatct ttgacgcact gcacagcctt tctcacccag      3060
     gtaccagagc aaccgctcgc ctggtcgctt cacgctttgt ctggccccgc gtgcagcaag      3120
     attgccgcgc ctgggctcga gcctgccagg cttgccaacg cgcaaaggtt tcacgccacg      3180
     ttcaagcacc gcttgggacg ttcgtgcccc cgtccgcacg tttccaacac gtgcatatcg      3240
     acttaatcgg accactacca cccgacggtc cttacagata ctgtctaaca gccatcgacc      3300
     gattcacacg ctggcccgag gtctgcccgc tccagagcat cacagcagaa gaagtcgcgc      3360
     aagccctctt aacctgctgg atctcccgtt tcggctcgcc ctctcgaata actaccgacc      3420
     aaggtagaca gtttgaatcc gacctctacc gagctttagg ccgaactctt gggatagaac      3480
     gactgcgcac aacgagctat catccctgcg ctaacggcat gatagaacgc ttccaccgtc      3540
     acttgaagtc agcacttatg tgccatccga acatgacctg gctccaagct ctccctctcg      3600
     tcctcctcgg catccgcgca tccattaagg acgatttgca agcttcacca gcagaactcg      3660
     tctatggcga gcctttacgg attcccggtg agcttgtcgc tccagcttcc aacgaacaat      3720
     ccaccaacgc aactgacttc gtaatccagc tccgtcaaca aatgtcacgg ctacgtcctg      3780
     tccccgcatc acgccacgct aaacccgatg ttttcgtttt caaggacctt aaaacatgca      3840
     cacacgtatt cctgcgtgac gacacagtgc ggaagtccct acaaccgcct tattccggtc      3900
     ctcatcaaat tatagcacgc gacgacaaaa cagtcactat ttcgttcaga ggaaaggaac      3960
     tccgtgttag cattgatcgc gtgaagccgg cttacatttt agcttccgac cctgtaccca      4020
     ctttggacaa taaaaaccta cggaagcctg caactcaacc aacaaaccca ggcatgacct      4080
     ccccccagac cgaacaacct accattccaa tgacaaccgg ttatactacc cggttcggaa      4140
     gacaggtacg atttcgactt ccaccagggt aacctccttt ctccgtgggg ggctgg          4196
//
ID   Gypsy-9_TrVa-LTR repbase;    DNA;    INV; 368 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 27.01, Created)
DT   04-AUG-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from the glasshouse whitefly genome, long
DE   terminal repeat consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-9_TrVa-LTR.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-368
RA   Kojima N.F. and Kojima K.K.;
RT   "LTR retrotransposons from the glasshouse whitefly genome.";
RL   Repbase Reports 22(1), 238-238 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 368 BP; 81 A; 117 C; 79 G; 91 T; 0 other;
     tgtggccgca ccaaatctgc cacactcgaa tctctcgggc gtctcctcaa gcgatgcgcg        60
     atagcgctct ctgtaggcgc ctcgctaaac tacagtgctc agcggcaact cgccgcttcg       120
     cgaaggatct agaaattctg gactagacta gtagctccac ctctcggatt tctccggaac       180
     cttctcgagc ctctcgaatg ttctagggct ccgcgctgcg actatataag cgccgtggcc       240
     ggcgcaccta ggcaatcagt tactcacaag cattcgtacg cttcacacgc tcaacgtatc       300
     attcgctact tctctctctc attcgatcta tcgaactcga cataggaata acgacgtgtt       360
     atcctata                                                                368
//
ID   Gypsy-N1B_RPr-LTR repbase;    DNA;    INV; 786 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-N1B_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-786
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3433-3433 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 786 BP; 212 A; 116 C; 238 G; 220 T; 0 other;
     tgtaacgaag ttgacctgag cagagaagaa aggcctagat tgttctggga gttgggtgac        60
     cgaagtctat aacggtccac cactgtgtaa acaaaaggcc agactttacc tgagccggag       120
     aagaaagggg ctagattgtt ctgggagttt agtgaccgaa gcctataacg gtccaccact       180
     gtgtaaaagc aagctaaggg agcggcccca gttggggtgg gggcagtgtg tgttttccca       240
     gtcagtgagt cgcaggtggg agtgagacag tcggagttgg agtggggcag tcgcagttgg       300
     aggcagtcac agttggagag agtcattgag tcggagttcg gcagagttag ccagttgggc       360
     tgttagccgg ttagtcgatg agccggttag ttagtgacag tttgagagag tcagtgttgc       420
     ggagtgcttc agagttagcc agttgggcgg ttagtcagtt agtgagtaga gctttgttag       480
     tgcagctgag actagtgcaa ttcagtgcag tgcggaccag tagtcagtcg tggaacagtt       540
     ttgtggtgta tttacgtagt gagtaagtaa cagtaaactg ttgtgactgt tgtaaatggt       600
     aactgtaatg aatagcgtta gttgctagta aatgttaatg ttagtaatgt taatgtgtta       660
     ataaatcagg ttactactta taagtttagc gagttttatt atttatcgaa cccacacata       720
     ttaaattaac tagtggcagt cactagttgt agttaaagtt tttagtaaaa ggacaaaaac       780
     tttaca                                                                  786
//
ID   Gypsy-N1_RPr-I repbase;    DNA;    INV; 1745 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, internal region: consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-N1_RPr-I.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1745
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3434-3434 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 1745 BP; 517 A; 369 C; 569 G; 290 T; 0 other;
     ttggtgtcag aagtgggatc tagtaaaacc gctaagacga gtaagtgttg attttattag        60
     ttcgggtgaa ttgccggaaa gttctggaaa accgacgagt gttgtatgcc cgtgagtact       120
     aagaagccca gcatggagga gttaatagca ctggcgaagg agatgagaga agatgtgaga       180
     gaaatgaaaa agggccaaga tgaaatgata gaagatatga gaaactggcg ggacgagacg       240
     aaaacaggcc atgacggaat aaaaggagaa ataaaaaggg aataaacgag ataccagaag       300
     gaatgaaggc cgaaacagaa aggccagaag cagacaacat ccaagaagaa gacgaaggca       360
     gcaaggatga cgcaggtagc aggtcggact ttagaggtga acgtgaccag gttaaaggaa       420
     gacgtagccg tgtagaagtt caagaagctg cgtgggcaga agaaagcata ggagcgctgg       480
     aaaactgcag cggacaggaa gagcaagacc gaggtaagag taccattatt gttcaaccag       540
     gagtggaatg gagccctgaa gcgaccaggg aggaacaact cctgggtgag gacacggggt       600
     ctgtgctcaa gtgtcaggag gaagcggtcc ggaagaggtc gacccagcag tcgggacgta       660
     ccgagctact gtgcccagcg gaattcgctc gccattgaaa tgggcatttt gtcgcgagac       720
     cggaaaagtg tggacaggaa ggaagaggag ctatcggaaa ttcacggagg tatcaccggg       780
     agtcaccttg gagtgaagag ggcatgggcc aagcggaggc agcggttctc tttggtaggc       840
     taccacgagg acggtgtaga ctgggctagt cggtgcaccg agtgggtagc aaggaaggga       900
     accagccgga aaccaatggc gccctgaggc aggacaaggt tggggttccg cgcaagagga       960
     tagccagcga tatggcagga ccttctcctg attacagaag aagaatgcgc tgcaatctgg      1020
     ttgcgatgga ccacttcagt aagtgggcag aggcccacga cttagcaggt caggacgcgt      1080
     caacggcagc tgcagcatcg acggtctacc agatcctcgg cgtcaggagg acaaggacga      1140
     cgccgctaca ccctcactct gacggcatgg tggagcgaat caacaggacc ctaggaggcc      1200
     atcagaggac tttggggaaa gatcatcagg aggactggga tgtacataca cctcccataa      1260
     tgatggcgta ccgatcggca gttcaggaga ccgagaccga gggccgaaca cctgccagcg      1320
     ttgtgttcgg tagggagctt cgactaccca gtgacctttt atttggcagc ccagagacgg      1380
     acgaatcgga cgtggacagc tatgctgcgg aacttcgccg taagtggaga gctgcacgtg      1440
     gaaaggtacg cgacaggatg aaactggaca gcgaccggac gaggacatcg tatgacaggc      1500
     aggtcatcgg aagaacgttc cagagaggtg agaaagtttg gtcgtacaag cgtgtccgca      1560
     aaaagggaaa acctcctaag ttgctgggta ggatcttaca ccactgtctc acggctcaac      1620
     gacctggtgt accggatcca acgcacgccc agatccaaga tgaaggtggt acacttggac      1680
     cgattgctgc cctacatcac gaaggagact tctgttcggg acgaacagtt ctaagagggg      1740
     agcag                                                                  1745
//
ID   Gypsy-N1_RPr-LTR repbase;    DNA;    INV; 991 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Gypsy LTR retrotransposon, long terminal repeat region:
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Gypsy-N1_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-991
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3435-3435 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 991 BP; 285 A; 142 C; 297 G; 267 T; 0 other;
     tgtaacgaag ttgacctggg cggagaagaa aggcctagat tgttctagag gttgaacgac        60
     caaagtcagt aacaggccgc cactgcataa acaaaagggg cggtatctac ttgtggcaga       120
     aaagaaaggc ctagattgtt ctaggggtta agcgactaaa gccggtaaca ggccaccact       180
     gtgtagacaa aagggccggt ctttacttga actagaaagg aaagggctag attgttcaag       240
     gagttagtga cctgtgtaaa agccagctaa gagaaaggcc tcagttgggg tggtggcata       300
     tgtgtttccc agccagtgat tgacaggtga gagtgagaca gacggagttg gagagagacg       360
     gagaatggga ggaggcggct cacagctgag gtggtggcag tatgttttct ccagccaatg       420
     aacgtcagga gggcgtggaa acttatgctc agagagttgg aggagggcag tcccagttgg       480
     agggaggcac gcagttaaaa ggaggccgac acagctggag aagtcagttt tcaatcaagt       540
     gttaatcgag tttcaagcaa gttttaagga gttattagag tttatagtta ttagtcaagt       600
     ttatgagtta gtcttggaga gtcagtgttg cggagtgctt cagtggtagc tagttgggca       660
     attagtcagt tgatgagtag agctgtgtta gtgtagctga gactagtgca attcggtgca       720
     gtgcggacca gtggtcagtc ggggaacagt tttgtggcgt tacgaagtga gtaagtaaca       780
     gtaaactgtt gtgactgttg taaatggtga ctgtaatgaa tagcgttagt tgcttgtaaa       840
     tgttaatgtg agtaatgtta acgtgttaat aaatcaggtt attacttaca actttagcga       900
     gttttattat ttaatcaaac ccacattatt taataactag tggcaggcat tagttgtgta       960
     agtaaagttt tttttttggg aaaaacttta c                                      991
//
ID   GYPSY1-I_AG repbase;    DNA;    INV; 3885 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY1-I_AG is an internal portion of the GYPSY1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   AP protease; GYPSY1-I_AG; GYPSY1-LTR_AG; GYPSY1_AG; Gypsy clade;
KW   gag; integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3885
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "GYPSY1_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 73-73 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY1_AG is a family of Gypsy-like LTR retrotransposons.
CC   GYPSY1-I_AG, an internal portion of GYPSY1_AG, is flanked by
CC   GYPSY1-LTR_AG LTRs. The GYPSY1-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 12 copies; they are
CC   less than 1% divergent from the consensus sequence.
CC   Some copies of GYPSY1_AG are 100% identical to each other.
CC   They can be active retroelements.
CC   The consensus sequence encodes the Gypsy1_AG1p 239-bp gag-like
CC   protein (pos. 67-782) and the 1029-aa Gypsy1_AG2p, composed
CC   of the AP protease (pos. 40-130), reverse transcriptase (pos.
CC   227-394),
CC   and integrase (pos. 744-900) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..819
FT                 /product="GYPSY1_AG1p"
FT                 /translation="MSTENVSNEETSPATAAVSVKLPEFWKNDPSLWFSQA
FT                 EIQFLLAGVHKDETKFYHIVAKLEQSVLCHIADYVKQPPATGKYEAVKQRL
FT                 ISRFELTEQAKMDQLLGSYDFGDLRPTHLLTKMQELAAGLNVNDSLLKRLF
FT                 LQKLPANIRAILSIHDGSLSKLAEMADKMIEMAPQTSVIHASVQKETTENL
FT                 AEEVAAMKVELRQMKARQPERGRLRSTSQNRSNENICWYHRKYGNRATRCR
FT                 SPCQYHQSKN"
FT   CDS           783..3869
FT                 /product="GYPSY1_AG2p"
FT                 /translation="MSKPLPVSSVKKLDFRPSEIGEVGGLRISRRLQIFDK
FT                 SSGIRFLIDTGSDVSIIPASKIEKTREPSPFLLHAANGTKIRTYGSKFVSV
FT                 DLGLRRKFSWNFLQADVTSAIIGADFLAHFGLLVDLGNRKLIDGGTKLHTV
FT                 CGLSKSSVYGVTTIAKDHPFRDLLVEFREITAPPTMRTEVRHNVTHHIQTT
FT                 GPPVASKPRRMPPDKLQAAKKEFETMMELGICRPSKSSWASPLHCVPKKNG
FT                 QWRFVGDYRSLNRITVPDRYPVPHIHDLLNNFLGKNCFTTLDLVRAYHFVP
FT                 VEESDVPKTAVITPFGLFEFTKMQFGLCNASQTFQRFMHHVFGDLDFVVVF
FT                 VDDICIASSNEEEHLSHVRTVFERLKSNGLVLNLDKCKFVQKEVNFLGYHI
FT                 NASGIKPQANRVQAVVDYSRPITVKDLRRFLALLNGYKRFIRNAVSLQQPL
FT                 QALIIGNRKNDTRKLQWTIAADEAFVKCKESLANAALLSYPDSSKRMGLMI
FT                 DASDTAAGATLQQNVAGAWQPLGFFSQKFSPSQKKYSVFGRELTAMKLAVQ
FT                 YFRHLVEGREFTIYTDHRPLTYALNSNSNHLPHEERYLQYISSFTKDIRHI
FT                 SGKDNSAADALSRVNTISAPSTVDFELLSKAQHDDPELQKLLADRTTSMNL
FT                 QLRSSVSTNQLLYCDVSDNVHVRPYVPEKLRLEVLRNIHCLSHPGVRATRK
FT                 MVARRFVWPSMNRDVARFVRSCIDCQRSKIHRHTSAALNEFELPKSRFRHV
FT                 HIDLVGPLPTSNGKRYLLTMIDRFSRWPEAVPLPDILAETVAKAFCECWIS
FT                 RFGVPETITTDQGRQFESELFTELTRLLGALRIRTTAYHPEANGLIERFHR
FT                 TLKTSLTCVDSKRWCDKLPLVLLGLRTAIREDIDCSVAEMTYGQPLRIPGD
FT                 FLEPSKTEICRSEFAKLLCRTMQQIGPIRNSHHDKRSVFVPKDLQSCKSVF
FT                 VRIDSVKRPLTHPYEGPFQIIERHEKYMDLNMNGEKRRISIDRIKPAYICE
FT                 KDSNEDNERTKVTPSGHRVRFLA"
XX
SQ   Sequence 3885 BP; 1101 A; 850 C; 865 G; 1069 T; 0 other;
     ttggtgaccc cgacgtgatc tccggattgt tattagttct cctaatttga aaatttgtga        60
     acgaacatgt ctaccgaaaa cgtttctaac gaagaaactt cccctgctac tgcagccgtt       120
     tcggttaaac ttccggaatt ctggaagaac gatccatcgt tgtggttttc gcaagctgaa       180
     attcagtttt tgttggccgg cgttcataag gatgaaacaa aattttatca tattgtcgcc       240
     aaactcgaac aatccgtgct ttgtcatatc gccgattatg taaaacagcc tcctgcgaca       300
     ggaaaatatg aagccgttaa gcagcgcctc atatctcgat tcgagctcac ggaacaagcc       360
     aaaatggatc agctacttgg atcgtacgat tttggagacc ttcgtcctac gcatctttta       420
     acgaagatgc aggaacttgc tgccggattg aatgtgaatg attcgttgtt aaaaagacta       480
     ttcctgcaaa aacttccagc taatatacgt gcaatactta gcatccacga tggaagtctt       540
     tcgaagctag cggagatggc agataaaatg atagaaatgg ctcctcaaac atcagttatc       600
     catgcttctg tgcaaaaaga aacgacggaa aatttagcag aagaagttgc tgccatgaaa       660
     gtagagctac gccaaatgaa agcacggcaa cctgagcgcg gtcgattgcg ttccacttct       720
     caaaatcgtt ccaatgaaaa catctgttgg tatcatcgga agtatggaaa tcgagctacg       780
     cgatgtcgaa gcccttgcca gtatcatcag tcaaaaaact agatttccgc ccatccgaaa       840
     tcggcgaggt gggcggatta agaatcagtc gccgtctgca aatcttcgac aaatcttctg       900
     gtattcggtt cttaatcgac acgggatcgg atgtatcgat aatacctgca tccaagatag       960
     agaagactcg agaaccatcg ccgtttttac tccatgcagc aaacggaacg aaaatacgaa      1020
     cgtatgggag caagtttgtt tcagtggatc tcggactacg ccggaagttt tcgtggaatt      1080
     ttttgcaagc cgacgttact tctgcaatta ttggtgccga tttcctcgcg cattttggtc      1140
     ttcttgtaga tcttggaaac agaaaactta ttgatggtgg tacgaaatta cacactgttt      1200
     gcggattatc gaaatcttcg gtttacggtg taacaactat agcaaaagat catccttttc      1260
     gagacttgct ggtcgaattt cgagaaatca ccgccccgcc gacaatgcgc actgaggtac      1320
     gacataatgt aacccatcat attcaaacca ctggacctcc agttgcttcc aaacctcgta      1380
     gaatgccgcc agacaaactt caagccgcta aaaaagaatt tgagaccatg atggagctcg      1440
     ggatttgtcg cccttccaaa agcagttggg caagtccact tcattgcgta ccgaaaaaga      1500
     atggtcaatg gcgctttgtc ggagattaca ggagtttaaa ccggataact gtgccagatc      1560
     gttatcctgt gccacatatt cacgatttgc taaacaattt cttaggtaag aattgtttta      1620
     ccactctaga tttggtacga gcatatcatt ttgttccggt cgaggaaagc gacgttccaa      1680
     agactgctgt aatcactccg ttcgggctct ttgaatttac caagatgcaa tttggattat      1740
     gcaacgcgag ccagacattt cagcgcttta tgcatcatgt cttcggtgat ttggattttg      1800
     tggtggtgtt tgtcgatgat atatgcattg catcgtctaa tgaggaggaa cacctatcgc      1860
     acgtgcgaac tgtctttgag cgtctcaaat caaacggctt ggtactgaac ttggacaaat      1920
     gcaagtttgt ccaaaaagaa gtcaactttt tggggtatca catcaatgca tctggtatca      1980
     aacctcaagc taatcgcgtt caagccgttg ttgattacag tcgtccgatt acggtgaagg      2040
     atcttcgacg atttttggca ttgctgaatg gttacaaacg cttcatccgg aatgctgtct      2100
     cattgcaaca accattgcaa gcactcatta ttgggaatcg aaaaaacgat acaagaaaac      2160
     ttcagtggac gatcgcagca gacgaagctt tcgtgaaatg caaggaaagt ttagcaaacg      2220
     cagctttatt gtcctatcct gactcgtcaa aacgaatggg actgatgatt gatgcttcgg      2280
     atacagcggc aggagctact ctacaacaaa atgtcgctgg cgcatggcaa ccgctggggt      2340
     tcttctcgca gaaattttcc ccttcacaga aaaagtattc tgtcttcggt cgcgagttaa      2400
     cagccatgaa attagcggtg cagtattttc gacatctagt ggaagggaga gaattcacta      2460
     tttatactga tcatcgtccg ctcacgtatg ctctgaattc taattcaaat catcttcctc      2520
     atgaagaacg atatttgcag tacatttcga gttttacaaa agatattcgg cacattagtg      2580
     gcaaagacaa ttctgctgca gacgcattat ccagagtcaa caccatctca gctccttcaa      2640
     cagtggattt tgaattatta tcgaaagcgc agcatgatga tccagaacta cagaagctac      2700
     ttgctgatcg aactacatca atgaacttgc agttaagatc atctgtttca actaatcaat      2760
     tgttgtattg tgatgtgtcg gataatgtac atgtcagacc gtatgtacca gagaagttac      2820
     ggttagaagt tcttcgcaac atccattgcc tttctcatcc cggtgttcga gcaacgagaa      2880
     aaatggttgc gcgaaggttt gtttggccct caatgaatcg agacgtcgcc cgcttcgtca      2940
     gatcttgtat tgattgtcaa cgatcgaaaa tccatcggca tacatctgcg gcgctcaacg      3000
     aattcgagct tccaaaaagt cgtttccgcc atgttcatat cgatttggtt ggaccacttc      3060
     cgacgtcgaa cggaaagcgg tatttattaa cgatgatcga ccggtttagt cgttggccgg      3120
     aagcagttcc tttgccagat atactagctg aaacagtcgc taaagcattt tgcgaatgtt      3180
     ggatttctcg gtttggtgtt ccagaaacaa tcacgaccga tcaaggacga caatttgaat      3240
     ccgaattgtt cacggaattg acgcggcttc ttggggctct ccgtattcgt actacagcgt      3300
     atcatcccga agctaacggt cttatcgagc gttttcatcg aacgttaaaa acttcgctca      3360
     cttgtgtcga ttcgaaacgt tggtgcgata aactgccgtt ggtcctgctc ggtttgcgaa      3420
     ctgctatcag ggaagatatc gattgttctg ttgccgagat gacatacgga cagccactgc      3480
     gaattcctgg cgattttttg gaaccctcga agacggaaat atgtcgctca gagtttgcca      3540
     aactgctttg ccggaccatg caacaaattg gaccaatcag aaactcgcat catgacaaac      3600
     gatcggtatt tgttccgaag gacttgcaaa gttgcaaaag cgtttttgtt cgaatcgatt      3660
     cagtcaagcg gcctcttaca cacccatacg agggaccttt tcaaataatc gaaaggcatg      3720
     aaaagtatat ggacttaaat atgaacggtg agaaacgaag gatttcgatt gatcgtatta      3780
     aaccagcata tatttgtgaa aaggattcga atgaagataa cgaaagaaca aaagttacgc      3840
     catccggtca ccgtgttcgg ttcttggcgt aactgagggg gactc                      3885
//
ID   Gypsy1-I_AP repbase;    DNA;    INV; 4072 BP.
XX
AC   Contig19874;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1AP;
KW   Gypsy1-I_AP; Gypsy1-LTR_AP.
XX
NM   Gypsy1-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4072
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 437-437 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3170-3694] - Integrase core
CC   LTRs are 100% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1271..4069
FT                 /product="Gypsy1-I_AP_1p"
FT                 /translation="MADVARPIIGADFLHYFGLLIDVKNHRLIDPSDQNVI
FT                 QTISVDYVSAPTLVVSHTHKWTELLQTFPDVTRESPVPVKFKHNVVHELRT
FT                 TGPPLFARPRRLPPERSQVARREFDYMLSKGICRPSSSAWASPLLLVAKKD
FT                 GACRPCGDYRRLNAVTRADRYPLPHLHDFTAHLAGRTLFTKLDLVKAYHQV
FT                 PIAEHDIPKTAVTTPFGLFEFPVMCFGLRNAAQTFQRVVNEMLRGLDYAFA
FT                 YIDDVLIASRNELEHEQHVRAVLKRLQEFGMSINPAKCVFAVTSLTFLGHV
FT                 INKDGCQPNPDRVDTIHRWPLPATKKGLQRFLGSVNFYRRFIPNAAEMQTT
FT                 LYNLAAQVKKKDGPLQWNDSTRSAFDTCRTALADTANLAHPKPNAELRLST
FT                 DASSTSIGAVIEQRNGNDWQPLGFFSRKLTDAETRYSTYDRELLAAYSSTR
FT                 YFIHLIEGRLITLFTDHKPLTFMFTHKSEKYVDRQVRQISFLSQYIHTVKH
FT                 IQGTNNVVPDALSRLETAALHSGPPDPAQWSKAQADDPELQRILANPDKCA
FT                 LRLQARDTPYGPIYADFSTGTTRTYVPAAYRRSVFDALHGLAHGGQKATSR
FT                 LINSRYCWPDMNRQVGRWVKCCVQCQRVKTGKHTVSPIIPFSTAERRFSHI
FT                 HIDLVGPLPPSNGNKYLLTCIDRYTRWPEAWPLENMSAHAVAVTLVNQWFS
FT                 RFGLPDVVTTDQGRQFEADLFRALSETFGIQHVRTSPYHPQANGMVERLHR
FT                 TLKDALTTQESAHWSTKLPLVLLALRSTVKSDIGLAPAELVYGTSLRLPGE
FT                 LFNPAPPTPSPPELIATLRDSMAQLRPTPGTNHNTRRSIFVPKDLSNVSHV
FT                 FLRIDAVKPPLQPRYEGPHAVLERNEKNYKLQCNNRRVWVSVDRLKPAFVL
FT                 RENPSLTDHSYAASTITKKQVRFSLPGGE"
XX
SQ   Sequence 4072 BP; 1028 A; 1257 C; 961 G; 826 T; 0 other;
     aattggtgac cccgaccatt cgaacacaca gcacgttcgg aagaccaccg cgaacgacat        60
     cgaactatcg aaggttccgc cgtgttgatc tcggtctcgt tgcaccaaca cgcgtgttac       120
     atttttcttt ttcaattcac gcaatgaacc agtttgacat tttcgctacc gacggcgagg       180
     ttccgaacga aaatcgcgtc gacccgaacg ctgcgtccgc tcaacaacaa ccgttacacg       240
     ttcccggcct gataccgcct ccacaaaata tttccgcgat cgaacacgtg cgtcttcccg       300
     gattttggcg acactcacca cagcaatggt ttacgcacgc cgaagctgtc ttccatagca       360
     accggataaa agcagatctg accaagctga accacgtgct cacggcatta gacgaggacg       420
     gaatccgaac ggtgtcggac ctgctaggcc cgaacgcgca gtattcggca gtacgggatc       480
     gtctcatttc ggcctacgcc gttccacaag cgactcgctt ccgcaccatt gttcaacacg       540
     ggggcatggg tgaccgccgc ccgtcgcaaa tgctccgaga catgcgaagt gtcctacccg       600
     aaggaatcgg cgacgccgcg cttaaagagt tctggatgca aaaactacct cccaccattc       660
     tcaccgttat ctccggactt gacggacctt tggacacctt agccgagcgt gccgatcgcg       720
     tgatggacgc gagcgccgga cgcgaaatct ccgtcgtttc ctcgcccaat acactcgaaa       780
     atcgattcca aacgatggaa agtgcaatta ccgcgttaac ctcacaaata gccgccctcg       840
     tcacgtcgca gtcgaggcaa gaacagcaat cacggcaaag aatttctacg cgttcacggt       900
     ctcgaaatcg ctcacaatcg cgccatcgaa acaaggactt ttgttactac cacaaccgtt       960
     tcgggaaaga ggcaaaaaat tgccacgacc cgtgcagctt ccgttcggaa aactagtgga      1020
     agcggcggag gccccgctga cttccgccgc ccgcgcaaca cgccgcgtgt tcgtcagcga      1080
     tacgcgtacc ggccagcagt ttctcgtcga ttccggtgcc gaaatatccg tgctaccacc      1140
     caccgcaggc gtacgcctgt cttccgacat agttctgacg gccgccaacg gtacacggat      1200
     aaaaacgtat ggtcctaaaa cgctacgtct gtgtttgggt gtcaaacgaa cgtacgcctg      1260
     gacgttcgag atggcagatg tcgcccgccc gatcatcggt gccgattttt tgcattattt      1320
     tggattgctc attgacgtca aaaatcatcg cctcatcgac ccgtcagacc agaacgtaat      1380
     tcaaactatc tccgtagatt acgtcagcgc accgacactc gtcgtgtcac acacacacaa      1440
     gtggaccgag ctattgcaga cttttcccga cgtcactcgc gaatcaccgg tacccgtcaa      1500
     attcaaacat aacgtggttc acgagctacg aaccaccgga ccgccattat tcgcacgccc      1560
     gcgacgccta ccacccgagc gcagtcaggt cgcacgccgt gagtttgact atatgctcag      1620
     caaaggtatt tgtcgcccat catctagtgc ctgggccagt ccacttctgc tggtagcaaa      1680
     aaaggacggc gcatgccgac cttgtggcga ctaccgacgt ttgaatgccg taacccgcgc      1740
     cgaccggtac ccgttgccac atcttcatga ctttacggca cacttggcag gtcgaacgtt      1800
     gtttactaag ctagacctgg tgaaagcata ccaccaagta cccatagccg agcatgacat      1860
     acccaagacc gcagttacca cgccctttgg attattcgag tttccggtga tgtgcttcgg      1920
     cctgcgaaac gcggcacaga cttttcaacg cgttgtcaat gaaatgctgc gcggtcttga      1980
     ctacgccttc gcatatatcg acgatgtcct catcgcgtca cgtaacgaac tcgaacacga      2040
     gcaacacgtc cgcgcagtgt tgaagcggct ccaagagttc ggcatgtcga ttaaccccgc      2100
     taagtgcgtt tttgccgtca cctcgctaac gttcctgggt catgtaatta acaaggacgg      2160
     ttgtcagccc aacccagacc gtgtcgacac tattcaccga tggccacttc cggcgaccaa      2220
     aaaaggccta caacggttcc taggttcggt aaatttttat cgtagattta tcccaaacgc      2280
     cgcggaaatg cagaccacgc tgtacaactt agcagcacaa gtcaagaaaa aagacggacc      2340
     gttacagtgg aacgacagca cccgctctgc attcgatacc tgccgcacag cccttgccga      2400
     cacagcaaac ctagctcacc ctaaaccaaa cgcagaacta cgcctcagca cagatgcgtc      2460
     cagcacatcg atcggcgccg tgatcgaaca aagaaacggt aacgactggc aaccactagg      2520
     tttcttctca aggaagctca ccgacgcaga aacgcggtac agtacgtacg atcgcgagtt      2580
     actcgcggca tatagcagca cccgctactt catccacctc atcgaaggcc gcctaatcac      2640
     tttattcacg gatcacaaac ccctcacgtt catgttcacc cacaaaagcg agaagtacgt      2700
     agaccggcag gtgcgccaaa tatcatttct gtcgcagtac attcacaccg ttaaacacat      2760
     tcaaggcacc aacaacgtcg tacccgacgc attgtcgcga cttgaaacag ccgcattgca      2820
     cagcggaccg cccgatccag cacaatggtc aaaagctcaa gcggacgatc cggagctaca      2880
     acgaattttg gcaaatcctg acaaatgtgc gttacggttg caggcgcgag acacaccgta      2940
     tggaccgatt tacgccgatt tttcgaccgg cactacgcgc acgtacgtac cggccgccta      3000
     ccgccgcagt gtttttgacg ctttacacgg cctcgcgcat ggtggtcaaa aagcaacgtc      3060
     gcggctgatc aactcacgtt attgttggcc ggacatgaat cgtcaagttg gccgatgggt      3120
     aaagtgttgt gtacagtgtc aacgagtcaa gacgggcaaa cacacagtat cgccgattat      3180
     accgttttcg acggcggaac gccgattcag tcatatacac attgacctcg taggaccact      3240
     tcccccatca aacggaaaca agtacctgct cacatgcatc gatcggtaca cacgttggcc      3300
     ggaagcttgg ccgcttgaaa atatgtccgc ccacgccgtc gccgtcacct tagtgaacca      3360
     gtggttttcg cgtttcggtt tacccgacgt tgtcacgacg gatcaaggac gacaattcga      3420
     ggccgatcta ttccgggcgc tgtcagaaac gttcgggata cagcacgtgc gtacctcccc      3480
     gtaccacccc caggcaaatg gtatggtcga gcgactgcac agaacgctca aagacgcgct      3540
     caccacacaa gagtccgctc actggagcac caagctgccg ttagttttgc tcgccttgcg      3600
     cagtacggtc aagtcggaca tcggactagc cccagcggaa ttggtttacg gcacttcact      3660
     acggttgccc ggcgagttgt tcaaccccgc accaccaacg ccgagcccgc cggaacttat      3720
     cgcaacgttg cgcgacagca tggcacaatt acgacctaca cctggtacga atcacaatac      3780
     gagacggtca atattcgtgc caaaggacct gtccaacgtc agccatgtgt tccttcgaat      3840
     agacgcggtc aaaccacctc tgcaaccgcg ctatgaggga ccacacgcag ttctagagcg      3900
     aaacgaaaaa aactacaagc tgcagtgcaa caaccgccga gtatgggtgt ccgtcgacag      3960
     gctcaagcca gcattcgtgc tccgcgagaa cccgtcgctg accgaccact cttacgccgc      4020
     cagcacaatc acaaaaaaac aagtccgttt ttcactcccc gggggggagt ag              4072
//
ID   Gypsy1-I_DM repbase;    DNA;    INV; 6732 BP.
XX
AC   .
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy97_DM;
KW   Gypsy1-LTR_DM; Gypsy1-I_DM.
XX
NM   Gypsy1-I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6732
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 471-471 (2009).
XX
RN   [2]
RP   1-6732
RA   Bao W.;
RT   "Sequence updated with consensus.";
RL   Direct Submission to Repbase Update (07-DEC-2019).
XX
DR   [2] (Consensus)
XX
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           648..2015
FT                 /product="Gypsy1-I_DM_1p"
FT                 /translation="LPMSESFRQYRNSKKCASDSESESDDSTENSVRKNTP
FT                 TNAFTAYKMSLETEQIKALIRALQEQALESQRREADLRKTIQDLAGQVAAI
FT                 QIAPARAEAPPIKVYRPVEITGLVPCGETLDAVKCLPDFMGTQETYVSWRQ
FT                 AANAAYHMFRKYEDSSRHYQAVVIIRSKVKGPADAVLSSFGTILNFDAIIS
FT                 RLDFTYSDKRPIHVIEQELGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSY
FT                 EASAATVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVE
FT                 SNHERYTFATSFARSQEDRDHKQYPKVQERQRAPPQAGSQGSAGKNPHFTK
FT                 QHRAQVHSAPRSDRMARENTPEPMDVDPSLSRMQPSHAPAYPKSKPAASGR
FT                 SVPPKRQRVNHVAQASDDSDKVYNTAASSAAVKVDDDSILEYDSDTINFLG
FT                 ESPCYPSSDEE"
FT   CDS           1973..5068
FT                 /product="Gypsy1-I_DM_2p"
FT                 /translation="FFRGKSLLPVIRRRVAGIDMKLLIDTGAAKNFIRPFK
FT                 GLKGVRPVQSPFTIHSIHGVTTITKKCFVSIFNLKATFFLLPDLTSFDAIV
FT                 GLDLLKQAGASLCLASGKLKWGSGAEQIDFHTCPDVNFTKVDCSDAPPLIK
FT                 GAFLKMLGNRKKAFADPNEALPYNTSVVATIRTVDEEPIYAKLYPYPMGAA
FT                 DFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRK
FT                 LNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLAERDREKTA
FT                 FAVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFS
FT                 EDENAHVKHVDWVLKSLYDANMRISAEKSRFFKKSVSFLGFIVTNNGAATD
FT                 PEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISDILKGEN
FT                 GSVSRHRSRSIQVEFSEAQQRAFEKLRNILASEDVILRYPDYKKAFDLTTD
FT                 ASAYGIGAVLSQEGRPITMISRTLSDREVNYATNERELLAIVWALAKLRHY
FT                 LYAVKEINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARIFYKPGKNN
FT                 LVADALSRQQLNVVEEQEPESCAATIHSELSLTHTIESTDKPVNCFQNQII
FT                 LEEARSHWKRTFILFGNKRRHSINFSCKQALLEELANIIIPNGVNAFHCDL
FT                 HTLALIQDDVVRQFPATKFWHCKNRVTDIFAMQERKEILTVEHNRAHRSAQ
FT                 ENVKQVLSEYYFPKMTKLASEIAANCKTCAKAKYDRHPKKQELGETPVPTH
FT                 VGEILHIDIFSTDKKYFLTCVDKFSKFAMVQPILSRTIEDLKAPLLQLMNV
FT                 FPKAKTIYCDNEPSLKSQTIVAMLENHFGVSISNAPPLHSVSNGQVERFHS
FT                 TLIELARCLKIDKGISDTVELVLLATARYNKSIHSVINKKPAEVMRADPDD
FT                 PHTDVQEKIKNAQILTRKRENASRQNRVFQVGDKVLVKSNRRLGNKLTPLC
FT                 EEKTIEADLGTTVLIKGRVVHKDNLK"
FT   CDS           5132..6730
FT                 /product="Gypsy1-I_DM_3p"
FT                 /translation="PLGISFFIVFIAAWHKFFIFSHLAYFLYIFAIIGGGQ
FT                 LHSEQVIIYHTRYRSLPTLLLCFLATTSAHITDYSRANYIPVIDGKVLVWE
FT                 EFAYVRHSANLSEYRRVIDETDSMLDMFPQSHMKKLLSVDIAHLRDMLDSL
FT                 SIHHRVARSLDFLGTALKVVAGTPDAEDFEKVKFTEARLVDAHNSQIEINT
FT                 KTQIRINELTDTINKLLKISKSAQIDTGHLYETLSTRNRIIVMELQNLMLT
FT                 ITLAKINVVSPNFLDHADLESVWGEEPTNTPIREILSVASVKVLQSLNILH
FT                 FIIKFPKIIMACNKVTILPVVHHDTVLRLKDNVVAECNREIRTVKNCSITP
FT                 GATFCQLSSVSSCAQELHAGVVAHCDAQQSDLHPITYVDEGIIVINDRPAL
FT                 VRVDNGTAIHIRGTHLITFIESAMVNETVFFNHDMVQNRAPGVANSPVLNI
FT                 SMKHEVLSLPYLHRLSEKNLEQIRNFEKDVDGYRLSQIALVAGAIFCALIC
FT                 IGLTWQRTTRAKKSTAQLKEVLAQIGSAEGGLNLEEG"
XX
SQ   Sequence 6732 BP; 1927 A; 1681 C; 1527 G; 1597 T; 0 other;
     ggcacccaac tccaggaacc cacaccacta ccctgaatca tgtaagtggg attctcaact        60
     taaacactac tccaaactgc gtctagaatt ttaaaatatt taaaatattt gtgcgagtta       120
     cataaataaa ttaagaaaat cggcatttcc actacaataa acgtttatat gtgttgcgaa       180
     ttaaaattat gttactgtta tgaagtttaa atatcgaatt ttgatttgtg gttgactttg       240
     caatccatat tgtgtgcatt tcgttccgcc ttcgcacatc cgcgggacac tgtcgtttca       300
     ttcgaaattt aattcgctac attggcttca cagccctttc aagctttgtt gtttttgacc       360
     cactccactt cgctacccga tactggcgca tgcattgctg tgacaatttt gtgcctttta       420
     tttatctctt tgtctttgct gtggcaattt ttgtctttgt atatttgttt gccttattgg       480
     agacccgctc cccgcaggcc cttcacctta tcgttactta gctaggcagt ggctctgctc       540
     gttgagtctt cgtccaatgc cttcaaagcg gcgactcagc ccccgcgacc cccttgccgt       600
     actgtttggc cccacgggca caacggcctg agtattcaca tacatagcta cccatgagcg       660
     agtcattccg acaatatagg aattctaaaa agtgcgctag cgactcagag tccgaaagcg       720
     acgattcgac agaaaactct gtacgtaaaa acaccccaac taacgcattc actgcatata       780
     aaatgtctct cgaaacggaa caaattaaag ctctcataag ggcattacaa gagcaagcct       840
     tagagagtca acgcagggag gctgacttgc gtaaaacaat tcaagatctg gccggccagg       900
     tcgcggccat acagattgcc cctgcccggg cagaagctcc cccaatcaag gtttacagac       960
     cagtagaaat caccggactg gtcccttgtg gggaaacatt ggatgccgtt aaatgtcttc      1020
     cagactttat ggggacacag gagacatacg tctcctggcg gcaagcggca aatgccgctt      1080
     accatatgtt caggaaatat gaggatagtt cgcggcacta tcaagctgtg gtcatcatca      1140
     ggagcaaagt taaaggccct gctgatgcag ttctgtcgtc ctttgggact atactgaatt      1200
     tcgatgcgat cataagtcgc ctcgatttca cgtatagtga caaacgcccg atacacgtta      1260
     tcgagcagga gctaggcacc ctcagacagg gaagcctgac gctcctccag tattatgatg      1320
     aggtcgagaa aaaactcacc ttactcacca ataaggcgac tatgtcttat gaagcgtcgg      1380
     cagcaacggt gctgtgtgag aagttccgag atgatgcttt gagagttttt gtctcggggc      1440
     tcaggcgcaa cctcacagac gtgctattcg cggcaaagcc taaggacatg ccgtcagcgc      1500
     tcgccctggc gcaagaagta gagtccaatc atgagcggta cacttttgca acttcatttg      1560
     cacgaagcca agaggatagg gaccacaagc aatatcccaa agtgcaggag cgccaacggg      1620
     cccccccaca agccggctcg cagggaagtg ctgggaagaa cccgcacttt actaagcagc      1680
     atagagcaca ggtgcactcc gctccacgta gcgaccgaat ggcccgagag aacacgccag      1740
     aacccatgga cgttgacccg tcgttgtcca ggatgcagcc atctcacgcc ccggcttacc      1800
     cgaaatcgaa gccggccgcg tctggccgtt cggtcccacc aaaaaggcaa agggtcaacc      1860
     atgttgccca ggcctctgat gattcggaca aggtttataa caccgcagcc tccagtgcag      1920
     cagttaaagt cgacgacgat tccatcctag agtatgactc ggataccatt aattttttag      1980
     gggaaagtcc ctgctacccg tcatcagacg aagagtagcg gggatcgaca tgaaactact      2040
     gattgatacg ggcgcggcaa aaaattttat ccgaccattt aaggggttga aaggcgtccg      2100
     cccggtgcag tccccattta caatccattc gattcatggt gtgactacaa taactaagaa      2160
     atgttttgtg tccattttta atcttaaagc tacctttttt ttattaccag acttgacctc      2220
     ctttgacgcg atcgttggcc tagacctgtt aaaacaggcc ggcgcgtcgc tttgcctagc      2280
     ttccggcaag ctcaaatggg gctccggagc agagcaaatt gactttcata cttgccccga      2340
     tgtcaatttc accaaagtag attgctcgga cgcaccgccc ttaattaagg gtgctttttt      2400
     aaaaatgctc gggaatagga aaaaagcttt tgctgatcct aatgaggctc ttccttacaa      2460
     tacgtcggtg gtagccacca tccggacggt tgatgaggag cccatttatg ccaagttata      2520
     cccatatccc atgggagcag ctgacttcgt caacggcgaa attcaggaac tgcttaaaaa      2580
     tggcataatc caaaagtcaa agtcccccta caataaccca atatgggtcg tagacaaaaa      2640
     gggcactgac gatgcgggca ataaaaaaat gcgcttggtg ctggactttc gaaaacttaa      2700
     cgaaaggacg gtaccagaca gataccccat gccaaatatc tctatgatat tggggaatct      2760
     cggcaaggcc aaatacttca cgaccctcga tctgaagtct ggctaccacc aaatcacgct      2820
     cgcagaacgc gaccgtgaaa agacagcgtt cgcagtaaac ggagggaagt atgagttccg      2880
     aaggctgcca ttcggactca ggaatgctgc aagcatcttc caaagaacaa ttgacgatat      2940
     tctgcgagag cagatcggaa agttctgcta cgtttacgtc gatgacgtca tcatcttttc      3000
     ggaagatgaa aacgcccatg tcaagcatgt agattgggtt ctgaagagcc tgtacgatgc      3060
     taacatgaga atatcggcag aaaagtcacg tttttttaag aaaagcgtga gcttcctggg      3120
     gttcatcgtc accaacaatg gggcggcgac tgacccagaa aaggttaagg ccataaagga      3180
     atttccggaa cccaaaaacg tatttgaggt aaggtcattc ttgggcttag ccagctatta      3240
     tcgttgcttt atcaaagact tcgcatcaat agctaggccc atttcagaca tattgaaggg      3300
     cgagaacggt agtgttagcc gacacaggtc caggagtatc caggtagaat tttccgaagc      3360
     gcaacaacgt gccttcgaaa agctacgcaa tatcctggcg tctgaggacg tcatcctgag      3420
     ataccctgat tacaaaaaag cgtttgatct aacgacagac gcttcggcct acggcattgg      3480
     cgcagtgctg tcccaggagg gacgtcccat tacaatgatc tcaaggacat tgtctgacag      3540
     agaggttaac tatgctacca acgaaaggga gctgttagcc atagtctggg cactggctaa      3600
     gttgcggcac tacctgtatg cggttaaaga gataaacatc tttaccgatc accaacctct      3660
     gacgttcgcg gtatcggagt ccaatccgaa cgccaaaatt aagagatgga aagcacgcat      3720
     cgacgagtcc ggcgcacgaa ttttttacaa gcctgggaaa aacaacctcg ttgcagatgc      3780
     cctctcgaga caacaactca acgttgttga agagcaagaa ccggagtcgt gcgcggccac      3840
     gattcacagc gaactttcgc ttacgcacac gatcgagtcc acggacaaac ccgtgaattg      3900
     cttccagaac cagataattt tggaagaggc gcgctcccat tggaaacgca cttttatatt      3960
     atttgggaat aagaggcggc actcgatcaa tttctcgtgc aaacaagctt tgctggagga      4020
     actcgccaac atcattatcc ctaatggtgt aaacgccttc cactgtgatc ttcacacgct      4080
     ggcgctaatc caggacgacg tagttcgaca gtttccagcc acgaaattct ggcattgtaa      4140
     gaatagggtc accgacatct tcgcgatgca ggagagaaaa gaaatcctca ccgtcgagca      4200
     caacagagct cacaggtcgg cccaagaaaa cgtgaaacaa gtactctccg agtactactt      4260
     cccgaaaatg accaaattgg cgagcgaaat agcagccaat tgcaaaactt gcgcaaaggc      4320
     gaagtatgac agacatccga agaagcagga gctcggtgag acaccagtcc cgacccacgt      4380
     aggagaaata ttgcacatcg atattttctc aacggataaa aaatactttc tcacctgtgt      4440
     tgacaagttt tctaaattcg ccatggtaca gccgattctg tctagaacca tagaggattt      4500
     gaaagcaccc cttttacaac ttatgaatgt tttccccaaa gccaaaacca tctactgcga      4560
     caatgaacca tcattgaaat cgcagacaat agtggctatg ctggaaaacc attttggcgt      4620
     cagcatttcg aatgcaccgc ccctacatag cgtctcaaac ggacaggtgg aacgattcca      4680
     cagcacgtta attgagctcg ccagatgcct aaaaatcgac aaaggcataa gtgacacagt      4740
     ggaattggtc ttgctggcca cagccagata taacaagtcc atccactctg tcatcaataa      4800
     aaaaccggcc gaagtcatgc gggcagatcc ggacgatcca cataccgatg tccaagaaaa      4860
     aatcaaaaac gcccagattt tgacaagaaa acgagagaac gcttctcggc agaacagagt      4920
     gttccaggtc ggcgacaaag tcctagtaaa gtcaaacaga cgattaggca acaaacttac      4980
     tcctttatgt gaggagaaga ccatcgaggc agacttgggg accacagtcc ttattaaagg      5040
     gagggtggtc cataaagaca acctcaagtg acccaagcag agcctagccg cggctccctc      5100
     ggaggcacac ttttattctt ccaatttgta gccactcggc ataagttttt tcattgtttt      5160
     tatagccgct tggcataagt tttttatttt tagccacttg gcatattttt tatatatttt      5220
     cgctattatt ggtggtgggc aactccattc cgaacaagta ataatttatc acacacgtta      5280
     caggtcgctc ccaacccttc ttctttgttt cctggccacg acatcggccc acattactga      5340
     ctattcccga gcgaattaca ttcccgtcat tgacggtaaa gtcttagtct gggaggaatt      5400
     cgcctatgtc agacactcgg ctaacctctc cgagtatagg cgggtaattg acgaaaccga      5460
     cagcatgctc gatatgttcc cccagtccca tatgaagaag ctcctgagcg ttgatatcgc      5520
     tcacctccgt gacatgcttg attctttgag catccatcac agagtggcaa ggagcctaga      5580
     cttcttggga actgcgttaa aggttgtcgc agggacacct gacgcggaag acttcgagaa      5640
     agtcaagttc actgaagcgc ggcttgttga tgcacacaat agccaaatcg aaataaacac      5700
     caaaacacaa attcgaatta acgaactcac tgataccata aataaacttt taaaaatttc      5760
     caaaagcgct cagattgata caggtcacct gtatgaaacg ctttctactc gcaacagaat      5820
     cattgtaatg gaattgcaaa acttaatgct cactataacc ctcgctaaaa ttaacgtagt      5880
     gagtccaaac ttcttggacc acgcagatct ggagagtgtt tggggcgagg agcccaccaa      5940
     cacccccata agggagattt tgtccgttgc gtctgtaaaa gtcctacaat cccttaacat      6000
     cttacacttt attattaaat tccccaagat tatcatggcg tgcaacaaag tcactatcct      6060
     tccagtggta caccacgata cggtgttaag gctgaaagat aatgtggtag cagagtgcaa      6120
     cagagaaata cgcacagtaa agaattgctc cataacacca ggggcaacat tttgccagtt      6180
     atcttcagtg agctcgtgtg cgcaggagct ccacgctggg gtcgtagcac attgcgacgc      6240
     acagcagagt gatctacatc cgatcaccta cgtcgacgaa ggaataatcg tcatcaatga      6300
     cagaccagca ctcgtgcgtg tggacaatgg aacggccatc cacattagag gcacgcacct      6360
     cataacattc attgagagtg ccatggtcaa cgagaccgtc ttctttaatc atgacatggt      6420
     ccagaatagg gcgccgggag tggctaattc cccagtcctt aatatctcga tgaaacacga      6480
     ggtcctgagc ctcccatacc ttcaccgttt aagtgaaaag aacttggagc aaatcaggaa      6540
     cttcgagaag gacgtcgacg gataccgact aagtcagata gcgctagttg cgggagcaat      6600
     tttctgcgct cttatctgca tcggtttaac ctggcagcga accactaggg ccaagaaatc      6660
     tacagcccaa ctgaaggaag ttctcgccca aatagggtca gccgagggcg gccttaatct      6720
     tgaggaggga at                                                          6732
//
ID   Gypsy1-I_Dmoj repbase;    DNA;    INV; 7444 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   01-OCT-2011 (Rel. 17.07, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dmoj;
KW   Gypsy1-LTR_Dmoj; Gypsy1-I_Dmoj.
XX
NM   Gypsy1-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7444
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1026-1026 (2009).
XX
RN   [3]
RP   1-7444
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (30-SEP-2011).
XX
DR   [3] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2441..3760
FT                 /product="Gypsy1-I_Dmoj_1p"
FT                 /translation="MEGGTPHTSGLSVGWVYQRCKEELIAVARDLGLEDEG
FT                 RVEDLRKRLSSFIQGGNYSVEIKGRLAEWETRFSSGGAASSMGGRAYQKSE
FT                 PDLRKIQESGSISTAPLRLSVPTASSMAGSRRDEKSKGSGNGGEMRIERRA
FT                 PALSPPPERHPPWNIAEQVRKWGMKYDGRSDPLGFIEILEERAITYGIELD
FT                 RMPRALSEVLVDKAAKWFLTSGLRDVPWLEFKKEFLDFFLPPQYLERLEDQ
FT                 IRARRQQEGEPFKDYLIELRLLMRQARYSPAQELNRAYENASPEYRLYVRR
FT                 HDFSSLTQLTQMAAEFENVRSQQREQGRKATVETIWPKPVEVRQSNPFRAK
FT                 TSDPRSGGQAEGRTETPAATQSAEATSRMMAQDAGPRPSRVCYRCAQPGHF
FT                 ARECHNAQVLFCRHCGQRGRTARECCERDSSGNGQGRPPRERSGAN"
FT   CDS           3844..7389
FT                 /product="Gypsy1-I_Dmoj_2p"
FT                 /translation="MTATIDTGATRSFVSEDCARQRTIRGERCQVESRIRL
FT                 ADGSALDVTRMMKTDVSLAGKTAEANLLIMPTMLDHVILGMDFLCAIGATV
FT                 RCGNAELEMRMVDDVGEGASPPSERRGEKGSSGFREQGQLAKGHVKESGPE
FT                 VSREAATSKEDPRSAITVSTVGVQESSSQGAPPDKKRGERKQRKKSRDKRK
FT                 RMEKGTPEERLRGSLPATRRDKKDRSEIMEDKRGAGPPARAVKQSEDLRSG
FT                 PEERSPEFKSVELEREGEPGGGPPTREESESEDEGNERSGHSSKEWPEELE
FT                 EELQEFLEAELALFEDLRGVTHIAEHSIRMKDDKPLKQRYYPKNPAMQKVI
FT                 DEQVDELLQAGAIEPSKSPHSAPIVLVKKKTGDWRMCVDYRQLNAHSVPDA
FT                 YPVPRILHILEKLRHARFISTLDLKSGYWQIPMAADSREYTAFTVPGRGLF
FT                 QWRVMPFGLHSAGATFQRALDTVIGPDMEPHAFAYLDDIVVIGATKEQHVA
FT                 NLKEVFRRLRAANLRLNRKKCSFFREKLAYLGHVISGEGICTDPAKVEAIR
FT                 SLPSPSCLKELRQCLGMASWYRRFVPDFASLVQPMTKLLKKGQKWIWSEEQ
FT                 EEALQKLKESLTTAPILACPDFSAKFVLQTDASDYGLGAVLTQEVEGQERV
FT                 IAYASRKLLKAELNYSATEKECLAIVWAIRKMRCYLEGYRFDVVTDHLALK
FT                 WLNSIESPTGRIARWALELQQFQFDVRYRRGKLNVVADALSRQPIDSCKQA
FT                 VEENPPCGWIKRMRERIVKEPEKFQDYVEENGQLYRNLGHRIDEEDFIPWK
FT                 LCVPSSLRGRVMRECHDAPTAGHQGVRKTAARLAQRYYWPGMFRDAAKYVR
FT                 CCETCQRFKCVQQKPAGHMLTRQVAEPMAVLCADFVGPLPRSKRGNTMLLV
FT                 FHDAFAKWVELVPLRRATTALLQLAFRERILSRFGVPRTFVCDNGVQFASR
FT                 SFKAFMESLGVTLQYTAPYSPQENPTERTNRTVKTMIAQYIEGHQSSWDEL
FT                 LPEITLAVNSSVADSTGFTPAFLMLGREPRLPAALYDEVTPGSATRETQPE
FT                 AKGVKMKEIFDIVRSNLQRASKDQGRHYNLRRRDWRPALGSAVLLRQHQLS
FT                 NAAEGFAAKLAPKFDGPYKVVKFLSPNVVRLTKEGERKRRVANIAQLKPFH
FT                 QEDEESDTIPETETGETGNRPIR"
XX
SQ   Sequence 7444 BP; 2434 A; 1442 C; 2276 G; 1292 T; 0 other;
     agtggcgccc gagcagggac gcggggctag agagagtgtg gtatacgggc ggcgtaaaaa        60
     cccgccggca tacccaaata gaggtgacgg gcagtagagg cgattgtgta gttatttggt       120
     ggttaatttg aatataggca gtgtgcgtat aaaagcagca aaaggcaaga acattcatgg       180
     taaagtgcga aaattaaaaa gtgaagacac cctacgacgg ccgcggggtc ggggggtcag       240
     aaatttcggg aagcgtcgag cgaaaaacgg gactagaaaa ccgttgcggc gccgaaaagt       300
     acagtgcgtg cgaaaatatt acgcagaagc gtaaaaccga aaacgcatgt gcataagcat       360
     gtgcacgcgc gggggcagcg tagcgaacgt cgccgaaatg cagcaacgag aagtggtaag       420
     agcagagtgt gtatatatgt atgcacacac caaaagtaag taacagagga caaaaaaaaa       480
     aaagagaaag cggtcagagt gaacgaaatt aaagatcagc aagattattg atgccgctgc       540
     aattgcacca aggagttaat agttgagtat aaaagtggtt ataagtgaag taagagaaaa       600
     gtgaaagcat ttagtgccga cggcaagcga atatacccgc cataagaaag tgtagttgtg       660
     aaaaagaaac agtcaagaaa acgcgcatag tcaagggtgc aagtgtgcat atatatacat       720
     gagtgaatgt aaggattagc ggggagagaa caaaaagtga aacagtgaag cgtatatatg       780
     tatgtgcgca tagacgagtg cgcatatgga tatatacata taaatgtgca tgtgagacaa       840
     ttagttaaga gagggtgagc ggcggagtgt ttatatgtat gcgcgtgggt gcatgcgtgc       900
     gtacatatgt atatacatgc gaagcgctca gttaagagag agtgaacagt gaagagtact       960
     atgcgcgcat aggcaagggt acatatgtat gtgtatatgt atgtgagaaa acaaattgag      1020
     agagagagag cgatcggtca agcgtatgtg tgtgattatg cgcatatgac actgggcgat      1080
     ttttgttgta tgcttgcgca tgcgggtgcg tgtatgtgtg taattatgcg catgtgacac      1140
     taggcgattt ttctgatgcg catggacaca ggcgtgcgca tatgacacga ggcgattttg      1200
     atcgtgggag tggacagtgg gccgagacca gtgaaaataa aataaaataa aataaaataa      1260
     aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa      1320
     aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa      1380
     aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa aataaaataa      1440
     aataaaaacg cactggaacg gagcgaagcg gaacatagca aggttaagta ggataaagcg      1500
     aagcgaagta aaagcaaaga agataaagcg aagtcaagtc aagtgaagat gaagtgaggc      1560
     gatatgagat aaagtgaaga gaaaatgcag caaggagaac tgaagcggag tgaagcagaa      1620
     taaaagcgga gtaataaaga taagagtaaa gagataaaat aaggtggaat aagtagagac      1680
     gggaaagtca agtaaaggaa ccagagtaaa gagaagagga gtaagtcaag taaaacggta      1740
     gtgaaagcaa agcaagttaa agcgaacaaa ctaggataaa gggataaagt tgagttggat      1800
     gagcgaacgg aaagtggaaa aaaggaaggg taataagatc aattaagaag taaaactgga      1860
     aaaaaagaaa tgaaacaagg taaaataaac aaaatagatt aagaaaaata aagaaaaaga      1920
     aataaaacaa aatagattaa gaaaaataaa gaaaagaaat aaaacaaaat agattaagaa      1980
     gaataaagaa agcgaaataa aaataaagta aaccaagaag ggcagagaaa gaggagtaaa      2040
     gtaaattgag gaaaataaag aaaaagaaat aaaagaaagt acattaagaa gaaaagaaaa      2100
     agagaataaa actaaagaga acgaaatagg ttaaggcgaa taaagaaaag taaaccaaaa      2160
     ctagaataag tgtaatataa gatagattaa gacagtaaaa gcaaacagaa ttgtataaga      2220
     taagaaaatt tggaaaaaaa aaaataaaat aaataaataa taaaaataaa ataaaaaaaa      2280
     aaaaaaaaaa aaaaaaaata gaaaaaaaag aaaaagaaga aaagagagaa taaaaaaaaa      2340
     aaaaaaaaga gaaaaaaaaa aaaaaaagaa aagaaagaaa acaaggaaaa gatattagta      2400
     taagcgaaca aggaagcagc aagacaacaa ggcatcaaca atggaaggag gaacacccca      2460
     tacttcgggg ctaagcgtcg gctgggtcta ccagcgctgt aaagaggagt tgatagcggt      2520
     ggcacgggat ctcggccttg aagatgaagg ccgcgtggag gatctcagaa agaggttgtc      2580
     gtcattcatc cagggcggca actattcggt ggaaatcaaa ggaagactgg ccgaatggga      2640
     gacacgtttc tcttcgggag gcgcggcgtc gagtatgggc ggccgcgcat accagaagtc      2700
     agagcccgat ctgcgaaaga tccaggagag tggttctatt tcgacggcgc cgctgaggct      2760
     tagcgtaccg acggcgagca gcatggctgg gagccggagg gacgagaagt cgaagggatc      2820
     cggcaatgga ggcgagatga ggattgagcg acgggctcca gcgctctcgc cgccgccgga      2880
     gaggcacccg ccttggaata tcgccgagca agtgaggaag tggggaatga agtacgacgg      2940
     tcggtcggat cctctcggtt tcatcgaaat cttggaggag cgagccataa cttatgggat      3000
     cgagctggac aggatgccga gggcgctgag cgaggtgttg gtagacaagg cggccaagtg      3060
     gttcctgacc agcgggctaa gagatgtgcc ctggttggaa tttaagaagg agttcttgga      3120
     tttcttctta cctccccaat acctcgagcg tctggaggac cagatccggg cgcgccggca      3180
     acaggagggc gaacccttca aggactactt gatcgagttg cgtttattga tgcgtcaggc      3240
     tagatacagc ccggcccaag agttgaatag ggcctacgag aacgcatccc cggaatacag      3300
     attgtacgta cggaggcacg atttctcatc tctaacacag ctgacccaga tggccgcgga      3360
     gttcgagaac gtgaggagtc aacaaagaga acaaggaagg aaggctacgg tggagaccat      3420
     ctggcccaag ccagtggagg tgcggcagag taatcccttc cgcgcaaaga cgtctgatcc      3480
     ccgatctgga ggacaagccg aggggcggac agagacgccg gcggcgacac agtcggcgga      3540
     ggcaactagc cggatgatgg cccaggacgc tggacctagg ccaagccgag tttgttatcg      3600
     atgtgcacaa cccggacatt tcgcgcgaga gtgtcataac gcacaggtgt tgttttgtcg      3660
     acactgtggt cagcgaggcc ggactgcgag ggagtgctgc gaacgagaca gctcgggaaa      3720
     cggccagggg cgccctccaa gagagcggag cggcgccaat tagatacgga agacgaggag      3780
     aggtacccgc tccgagtgaa ggagtggaag atcgtcgcga cggtgacggt cgggggtcaa      3840
     aggatgaccg ccacgatcga caccggggcc acgcgcagtt ttgtcagcga agattgcgcg      3900
     cgccaacgga cgatacgagg cgagcgttgc caggtggagt cgcgaatcag gctggccgat      3960
     ggatcagcgc tggacgtgac gaggatgatg aaaacggatg tgagtctggc tggaaagacg      4020
     gcggaagcga acctgctaat aatgccgacc atgctggacc acgtcatcct cggcatggat      4080
     tttctatgcg ccatcggcgc tacggtgcgt tgtggcaacg cggagctgga aatgaggatg      4140
     gtggacgacg tgggagaagg agcgtcgcca ccgagtgaac gaagaggaga gaaaggcagc      4200
     agcggtttta gagagcaagg ccagctcgct aaaggacatg tgaaggagtc gggcccagag      4260
     gtgtcgcgcg aggccgcgac gtcgaaggag gatccgaggt cggcaatcac ggtgtcgaca      4320
     gtcggcgttc aggagtcgtc gagccaaggc gcgccgcccg acaagaaaag aggtgagagg      4380
     aaacagagga agaaaagcag agacaagagg aaaagaatgg aaaagggaac gccggaggag      4440
     agacttagag ggagtctccc agcgacaagg agagataaaa aggacagaag cgagataatg      4500
     gaggacaaaa ggggagctgg gcctcccgcg agagctgtga agcagagcga ggacttgagg      4560
     agcggacccg aggagcggtc gccggagttt aaatcagtcg agttggagag ggaaggtgag      4620
     cccggaggcg gcccaccgac aagagaggaa tcagaaagcg aggatgaagg aaatgaacga      4680
     tccgggcaca gtagcaagga gtggccggag gagttggagg aggaactgca ggagtttcta      4740
     gaagcagagc tagcattgtt cgaggacctc agaggcgtga cgcacatcgc tgagcatagc      4800
     atccggatga aggacgacaa gcctttgaag caaaggtact accctaaaaa tccggctatg      4860
     caaaaggtga tcgacgaaca ggtggacgag ctgctccaag ctggagcgat tgaaccgtcg      4920
     aagagcccac acagcgcacc catagtcttg gtcaagaaaa agactgggga ttggcgcatg      4980
     tgcgtagatt atcgacagct caacgctcac tcggtcccgg atgcgtaccc tgttccgcgg      5040
     attcttcaca ttttggagaa gttacgacac gcacgattca tatccacgct ggatctaaag      5100
     agcggttact ggcagatccc aatggcggcg gatagcaggg aatacacggc gttcaccgtg      5160
     ccaggcagag gattgttcca atggcgagtg atgccattcg gtttgcattc ggcgggggcg      5220
     acattccaga gggcgctgga tacagtcatc gggcccgaca tggagcctca cgcgtttgcg      5280
     tatctagatg acatagtggt catcggagcg acgaaggagc agcatgtggc caacctgaag      5340
     gaagttttcc ggcggttgcg ggcggccaat ctgagactca acagaaagaa atgcagtttc      5400
     tttcgggaaa agttggcgta ccttggccac gtgataagcg gagaggggat ttgcacggat      5460
     cccgcgaagg ttgaggcgat tcggagcctc ccatcacctt cgtgtctaaa ggagttgcgg      5520
     caatgcctag gaatggcatc gtggtataga cggttcgtgc cggacttcgc atcgctagta      5580
     caaccgatga cgaagctcct gaagaagggt cagaagtgga tctggagcga ggaacaggag      5640
     gaggcgttgc agaaactcaa ggagagtttg acgaccgcgc ctattctggc ctgtcccgac      5700
     ttctcggcca aattcgtgct gcagaccgac gccagcgact acggcctcgg tgcagtgctg      5760
     acgcaagaag ttgaggggca ggagcgagta atagcatatg ccagtcggaa gttactgaag      5820
     gcggagctaa actactcggc cacggaaaag gagtgtctcg cgatcgtctg ggcgatccga      5880
     aagatgcgat gttacctgga gggctacagg ttcgacgtcg tcacggatca cctagcgctg      5940
     aaatggctca actctataga aagtcccacg ggccggatcg ctcgttgggc gctagagttg      6000
     cagcaattcc agttcgacgt acgctatcgc cgtgggaaat tgaatgtggt ggccgacgca      6060
     ctgtcccgac agcccataga cagttgcaag caggccgtgg aagaaaatcc cccttgcggg      6120
     tggataaaga ggatgcgtga aaggatcgta aaggagcccg agaagttcca ggattacgtg      6180
     gaggagaacg ggcagttata ccggaattta ggccatagga tagacgagga ggactttatc      6240
     ccatggaagc tctgcgtccc aagcagtttg aggggcagag tgatgaggga gtgtcacgac      6300
     gctcccacgg ccggacatca aggagtgagg aagacggcag cacgacttgc gcaaaggtac      6360
     tattggccgg gcatgttccg agatgccgcc aagtacgtga ggtgttgcga aacgtgccaa      6420
     agattcaaat gcgtgcaaca gaagccggcc gggcatatgc tcaccaggca ggtggcggag      6480
     ccaatggcgg tcttgtgcgc agacttcgtg ggaccgttgc ctcgttccaa gcgtgggaac      6540
     acgatgttgt tggtgttcca cgacgctttc gctaaatggg tggagctggt gccgttgagg      6600
     agagctacta ccgctctgtt gcaactggcg ttccgggaac gtatactcag cagatttgga      6660
     gtacccagga cattcgtttg cgacaacggc gtacaatttg caagcaggag tttcaaggcg      6720
     ttcatggaat ccttgggggt gacactccag tacacagcgc cttattcgcc gcaggagaac      6780
     ccgacggaga gaacgaatcg cacggtgaag acaatgatag cccagtacat cgaaggccac      6840
     cagagctcgt gggacgagct gctgccggag ataacgctgg ccgtcaattc gagcgtggcc      6900
     gactccacgg gcttcactcc agcatttctg atgttagggc gggagccacg cctacccgcc      6960
     gctttgtacg atgaagtcac tcccggttcg gcgactagag agacccagcc cgaggccaaa      7020
     ggagtcaaaa tgaaggaaat ttttgacata gtgcgtagta acttgcagcg agcatcaaag      7080
     gatcaaggca ggcactacaa cttgagacgg cgtgactgga gaccagcgtt gggttcggcg      7140
     gtgctgttac gacaacatca actgtcgaac gcggcggaag gattcgcggc gaaactggcg      7200
     cccaaattcg acggccccta caaggtcgtt aagttcctgt cccccaacgt ggtgcgcctg      7260
     acgaaggagg gcgaacgcaa gaggagggtg gccaacattg cgcagttgaa gccattccat      7320
     caagaagatg aagaaagcga cacgatcccg gaaaccgaga ccggggaaac ggggaacagg      7380
     cctatacgat gaccgtcgac tcatcggggg gcgtaataat ttccctgtcg aagtaagggg      7440
     gggg                                                                   7444
//
ID   Gypsy1-I_Dpse repbase;    DNA;    INV; 4010 BP.
XX
AC   Unknown_group_134;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dpse;
KW   Gypsy1-LTR_Dpse; Gypsy1-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4010
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1027-1027 (2009).
XX
DR   Genome; Unknown_group_134; Positions     218    4227.
XX
CC   'ACGC' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..2161
FT                 /product="Gypsy1-I_Dpse_2p"
FT                 /translation="MVQQRRCRMVTFSDESPATASAAPTRSADPTATPRTK
FT                 TTHRNPDHARPSNVPVTTHQNPNHARPINVPVTTHQNPNHARPINVPVTTH
FT                 QNPNHARPSNVPVTTHQNPNHARPINVTMTTHQNLDHARPSNVPVTTHQNS
FT                 NHARPINVTMTTHQNLDHARPSNVPVTTHQNPNHARPINVTMTTHQNLDHA
FT                 RPSNVPVTTHQNPNHARPINVPVTTHQNPNHARPINVPVTTHQNPNHARPI
FT                 NVPVTTHQNPTHARPINVPVTTHQNPNHARPSNVPVTTHQNPNHARPINVT
FT                 MTTHQNLDHARPSNVPVTTHQNPNHARPINVTMTTPQNLEHARPSNATRTQ
FT                 PTIRYDHARTINEDSTETTTTPLDTPRASPSASKNTQSNEDSTETTATPLD
FT                 TPRASPSASKNTQSHEDSMETTATLLDAPRASPSASKTTQSIPTKTTELSH
FT                 DHARTSSNIRTTFLSFDHARLSSNIRKTLLSPDHARPSRNTRTTHRSFDHA
FT                 RPSSNTRTTHLSPDRDGPGGAKNTTRSTRAKSEVRSSAAQSERTTPRETSI
FT                 VLHRDPLRQEDHGPEGQERVKVDQLASIPPTDYQLAPLADAAAGRQRNPFR
FT                 RSDSTDPITVNLAIITCALLEEISPPTAPITEPPIPPWVAEFLKQKLAKFE
FT                 GVSHIAEHTITLKDDKPIKQRYFPKNPAMQKIINAQVDELLH"
XX
SQ   Sequence 4010 BP; 1185 A; 1326 C; 945 G; 554 T; 0 other;
     acgcggtcgt tcgtcagtca acgcatcgct catgaagtaa gtaccggagg gaacgcacgg        60
     aatataagga ctaccgtccg cctggcggat ggtacagcaa aggaggtgcc gcatggttac       120
     ttttagtgac gaaagtcccg cgactgcatc cgctgctcct acccgctcgg ccgatccaac       180
     agcgaccccc cggacgaaga caacgcaccg gaatcccgac cacgccagac ccagcaatgt       240
     accagtgaca acgcaccaga atcccaacca cgccagaccc atcaacgtac cagtgacaac       300
     gcaccagaat cccaaccacg ccagacccat caacgtacca gtgacaacgc accagaatcc       360
     caaccacgcc agacccagca acgtaccagt gacaacgcac cagaatccca accacgccag       420
     acccatcaac gtaaccatga caacgcacca gaatctcgac cacgccagac ccagcaatgt       480
     accagtgaca acgcaccaga attccaacca cgccagaccc atcaacgtaa ccatgacaac       540
     gcaccagaat ctcgaccacg ccagacccag caatgtacca gtgacaacgc accagaatcc       600
     caaccacgcc agacccatca acgtaaccat gacaacgcac cagaatctcg accacgccag       660
     acccagcaat gtaccagtga caacgcacca gaatcccaac cacgccagac ccatcaacgt       720
     accagtgaca acgcaccaga atcccaacca cgccagaccc atcaacgtac cagtgacaac       780
     gcaccagaat cccaaccacg ccagacccat caacgtacca gtgacaacgc accagaatcc       840
     cacccacgcc agacccatca acgtaccagt gacaacgcac cagaatccca accacgccag       900
     acccagcaac gtaccagtga caacgcacca gaatcccaac cacgccagac ccatcaacgt       960
     aactatgaca acgcaccaga atctcgacca cgccagaccc agcaatgtac cagtgacaac      1020
     gcaccagaat cccaaccacg ccagacccat caacgtaacc atgacaacgc cccagaatct      1080
     cgaacacgcc agacccagca acgccacccg aacccaaccc acaattcgat acgaccacgc      1140
     cagaaccatc aacgaagatt cgacggagac gactacgaca ccgctggaca cacccagggc      1200
     cagtccgtcc gcctcgaaga acacccagag caacgaagat tcgacggaga cgactgcgac      1260
     accgctggac acacccaggg ccagtccgtc cgcctcgaag aacacccaaa gccacgagga      1320
     ttcgatggag acgactgcga cactgctgga cgcacccaga gccagtccgt ctgcctcgaa      1380
     aaccacccag agtatcccta ccaagacaac tgagctaagc cacgaccacg ccagaaccag      1440
     cagtaacatc aggacaacgt ttctaagttt cgaccacgcc aggctcagca gcaatatcag      1500
     gaaaacgctt ctaagccccg accacgccag acccagccgc aatacaagga caacgcatcg      1560
     aagcttcgac cacgccagac ccagcagtaa tacaaggaca acgcatctaa gccccgaccg      1620
     agacggaccc ggcggcgcta agaatacaac acgatcgacg cgagccaaat cggaagtgcg      1680
     gagcagtgcg gctcaatcag agcgaacgac cccacgggaa accagcatcg ttctacaccg      1740
     cgacccgcta cgccaggaag accacggccc cgaaggacag gagcgggtca aggtagacca      1800
     actcgcatct atccccccaa cggattatca actcgcccct ttagccgatg ccgcggccgg      1860
     tcgacaacgc aacccttttc gaagatcaga ctcgactgac cctatcaccg tgaaccttgc      1920
     catcataaca tgtgcccttc tcgaagaaat ctcgccaccg acagccccca tcaccgaacc      1980
     acccatcccg ccgtgggtag ccgagttttt gaagcaaaaa ttggccaagt tcgagggcgt      2040
     gtctcacata gctgagcata ccatcactct gaaggacgac aagccgataa agcagaggta      2100
     cttccccaaa aatccggcca tgcagaaaat catcaatgct caggtcgacg agttgctgca      2160
     ctgaagaagg agaaaaggtg gatctggagt gacgaacagc aggccgcttt cgaggagttg      2220
     aaggagaagt taacccgagc acccgtctta gcctgcccgg atttcgcgga gaggttcgct      2280
     ctacaaactg acgcaagcga ctacggtcta ggggccgtcc tgacgcaaca gatcagtaga      2340
     gaggccagtc gccagtcgaa ggcttttgaa agcagaagag aactactcag ccacggaaaa      2400
     ggagtgctta gccatcgtct gggccatcag gaaattacga tgctaccagg agggctacca      2460
     cttcgacgtc atcaccgacc atctcgcctt gaagtggtta aactcgatca ataatccaac      2520
     cggtcgcatc gcccgttggg cgctggaact ccaacagtat cgctttgacg tgctttaccg      2580
     acgcggaagc caaaacatcg tagcagacgc tctttcccgg caacctatcg acaccataca      2640
     gcaagcccta gaagacctgt ccacctgccc ctggatacaa aggttgctca aacgtatcca      2700
     gtcacgacct gaggaatgca gagaatttat catcgagaac ggacagatct accggaatgg      2760
     acaggaatgg aactcgtgca caccgcgccg tatacccctc agcaaaaccc gacggagagg      2820
     gcaaaccgaa ccatcaagac aatgattgca caatacgtcg acggggacca acggacctgg      2880
     gacgatctcc tccccgagtt aagcttggcc ataaacagca gcacgtatta caccacggcc      2940
     ttcagcccgg cctttttggt actcggacga gaaccaaggc taccaggagc cttgtacggc      3000
     gaagtgaccc caggattagg aaatgaacca gagcctgccc acgagaaggc gacacgactg      3060
     caggaagtgt tcaaggtcgt gcaggagaac acccaacggc atcccaagag cagaagagaa      3120
     catacgacct ccgacggcgc gagtggcgac ccgaactagg caccctagtc ctccttcggc      3180
     agcatcactt atccaaagcc gccgacggtt tcgcgtcaaa attggcccct aagtacgacg      3240
     ggccgtacaa agtaacctga ttcttatctc ccaacgtagt tcgactacag attcaacgag      3300
     gcaaacaaag gaaaacagcg agtttagctg acttaaaggc gttccacgga gtggaccacc      3360
     ctgaggagaa cccgacgacg atggagagat aagtactaca cccaatgtaa acatcttctc      3420
     actcgcaccg ctccagcagg atagggggag ggtattaata cttctagtta agacaggcag      3480
     gttctaactg ataggcattt tctccctaga atcgactgaa gacatgaagc gtctaagaga      3540
     cggaaggcaa gctcggcccc taggggaaaa tggtgatacg acgggacacc ctagcggaga      3600
     ccagctgcct gaagtcccgg catctgccga tgaaccaacg acaaaccggg ctcgcggctg      3660
     gatcgtcgac cccaatgggc catctgcctc ccgtcaagcc cagctgaggc gggtcggaga      3720
     ggcgacactt cgacaaccgg acaggatgcc atggggccag cgcgcggcag ccatccaagg      3780
     gtggatcgac cgacaaaccc aggacccggg gaccgacgcc gaagaggaag tagagcccga      3840
     tggccgcttc gcaagcgcag gtgtccgctc ggcgcccaat cacgacgtcg ccgccctgaa      3900
     tcgccgttgg ttcgggagtt atggggctgc tatcgacgac gacaacgcga caacggacac      3960
     cgacgagcac gagacaataa tacgcgacgc tcaaagcctg gcgtccacgc                 4010
//
ID   Gypsy1-I_DV repbase;    DNA;    INV; 4946 BP.
XX
AC   scaffold_12963;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_DV;
KW   Gypsy1-LTR_DV; Gypsy1-I_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4946
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3094-3094 (2009).
XX
DR   Genome; scaffold_12963; Positions 18184979 18180034.
XX
CC   Positions [2429-2935] - Reverse transcriptase
CC   Positions [4001-4477] - Integrase core
CC   'ATAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..4864
FT                 /product="Gypsy1-I_DV_1p"
FT                 /translation="MENININDVSIATLKSWLALLNLPTEGTKTELMARLN
FT                 KVPVDIRDDAAKELEVQRNKEQTIEAQNELQNIMQQQRDEIANGAEMLKLM
FT                 RLEIEASRKFLEEFQVTVNRNSHIGGSDGGEQESEVGDLLQLEDGHTEERP
FT                 RSTDGNAGAADYTGTDGNAGAADHAGAAGNAGAAGRIDESGNAVGGNLNNC
FT                 IQTGAMMLAKEILLEFTGESEVRKWVMQFFNVAKIYRLNDMQQHLLCISKL
FT                 KGGALKWLHADPMRIIAPIDEMLNQLVLAFGGGFSKSELRQKFEDRVWKPD
FT                 EVFATYFSEKSILAQDINIDVEELMEGIIRGIPCENLRTQASMHCFTNPAQ
FT                 ILRAFAAIKLPIKRVRNHVVKQTAQEAQADKQQRCYNCNVKGHWAKDCLKP
FT                 KREAGSCYACGSKDHLIAGCPNKKYDMENKYVRYLRIHFSNSFNKSIIAEC
FT                 LIDSGSPISFLKEKFVPLKVKRMPDANSYVGLNESKLKNFGKILCFMKKKL
FT                 INVYFNVIIVANESMRYDAVLGRDFMDSFGLNIDLRTLKIVNGHKVDHQNN
FT                 GKNDIIATSYKEKQKKVDDEDIKHEQNETILLNDKIVNKEIVSNETVSDEL
FT                 VSEKIVSPETLGDKVGSDEIVRNKIISGEIVRNEVIGIETVSDEIVSYGEL
FT                 KLEPDSEEVVSDEIIYNQTGIEKVIIEDIGNSAVKINNHVNEAPVNSEIMG
FT                 VLEENFEKDILTISWEDSNKRENIYILSEDIDYSTKCEFENLFENTYVKAK
FT                 RPNQPKLRHELSIRLENDKVFNCTPRRLSYMEKEKLQELLDDYLKDGIIRP
FT                 SCSEYASPIVLVKKKTGDMRLCIDFRRLNKIICRDNYPLPLIDDLLDRLCG
FT                 KTVFSKLDLKNGYFHVFVNEQSIKYTSFVTPLGQYEFLRMPMGLKTAPHVF
FT                 QRFVNNIFCDMIKDNKVIVYMDDIMIASTNIKEHMETLKEVFIRLVQNKLE
FT                 LKLDKCEFFKSSVKYLGFVVDSKGVRADEKGLEAVKSFPIPNKIQGVQSFL
FT                 GLCSYFRRFILNFSILAKPLYDLLKKDKKFKFGEEEFKCFNMLKDKLLEAP
FT                 VLSIYNYKEEIELHCDASAVGFGAVLFQKKEDRKLHPIFYFSKRTTEVESK
FT                 YHSFELETLAIIYALRRFRIYLQGKRFKIMTDCNSLTLTLNKIDLNPRIAR
FT                 WALELQNYDFELVHRSGKQMQHVDALSRCYEDILVIESNSFEDNLVICQSK
FT                 DDKLVDIRKMLEKEEHKLFEMRNGVIYRKTNDGRLVFYVPKDMEEHVLYKY
FT                 HDELGHAGRDKMIDAIGKSYWFPYIKEKAIKHIGNCLKCIAFAPKTGKSEG
FT                 LLHSIPKGNKPWEMIHIDHYGPINAGRANKYILAVVDGFSKFVRLYTAKTT
FT                 STKEAIKALKDYFRAYSRPKFIVSDRGSCFTAKEFDEFLKNEGVTHIKIAT
FT                 GCPQANGQVERLNRDLGPMMAKMAEPENGLHWDVIIENVEYAINNTQHKSI
FT                 KKFPSEMLFGLQQKGKVVDELKEKLEEFTQVNTCDKRNLENIRKSGEIYQK
FT                 EAQIRNEERINKKKKVSVEYKIGDYVMVKNFDSTPGVSKKLIPRYKGPYSI
FT                 EKILKNDRYLLKDVEGFQLSRNPYVGIWNSQNFKHWMRK"
XX
SQ   Sequence 4946 BP; 1869 A; 648 C; 1107 G; 1322 T; 0 other;
     atatcagaag tgggattgac tcagaaaaaa aaaaaaacac aacaaaatgg aaaatataaa        60
     tataaatgac gtgtcaatag cgacattgaa aagttggttg gcattactaa atttgccaac       120
     agagggtacc aaaactgagc tgatggcgag attaaataag gtaccagtgg atatccgaga       180
     cgatgctgca aaggaacttg aagttcaacg taacaaggaa cagacaattg aggctcaaaa       240
     tgagttgcaa aacataatgc aacaacagcg tgacgaaata gcaaatggcg ccgagatgct       300
     gaaattgatg cgtctcgaaa ttgaagcgtc tcgaaaattc ctagaagaat ttcaagtaac       360
     ggtgaaccgc aactcgcaca tcggcgggag cgacggggga gagcaagaaa gtgaagtcgg       420
     cgatttattg cagctagagg atggtcacac tgaagaaaga ccacggtcga cggatggcaa       480
     cgctggtgca gctgattaca ctggaacgga tggcaacgct ggtgcagctg atcacgctgg       540
     tgcagcgggc aacgctgggg cagctggaag gatcgacgaa agtggcaacg ctgtcggagg       600
     caacttaaat aattgcatcc aaactggagc gatgatgtta gccaaggaaa ttttattaga       660
     atttactgga gaaagtgagg tgcgtaaatg ggtaatgcaa ttcttcaatg tggccaagat       720
     ctacagacta aatgatatgc aacagcactt gctttgtata agcaaattga aaggcggtgc       780
     tttgaagtgg ttgcatgcag accctatgcg catcattgct ccgattgacg agatgctaaa       840
     tcaattggtt ttggccttcg ggggaggatt ttcgaagtcg gaactacgac agaagttcga       900
     ggatcgggtt tggaaaccag atgaggtgtt cgccacatat tttagcgaaa aaagcatatt       960
     ggcacaggac atcaacattg atgtagagga gttaatggag ggtattattc gaggcatacc      1020
     ttgcgaaaac ttgcgcactc aagctagtat gcattgcttt accaatccgg ctcaaatttt      1080
     acgtgcgttt gcagctataa agttgccaat taaacgggta cgaaaccatg tagtgaaaca      1140
     aactgcacag gaagcacagg cggacaaaca acaacgttgc tacaattgca atgttaaggg      1200
     ccattgggcc aaagattgtt taaagcccaa acgggaggca ggatcttgct atgcgtgcgg      1260
     ctcaaaggat catttaatag caggatgtcc aaataaaaag tatgatatgg aaaacaaata      1320
     tgtaagatac ttaagaattc attttagtaa ctcatttaac aaatcaataa ttgcagaatg      1380
     ccttatagac tctggcagcc ctatttcatt tttaaaggaa aagtttgtgc cattaaaagt      1440
     aaagcgtatg ccagatgcaa attcgtatgt aggtttaaat gaaagtaaat tgaaaaattt      1500
     tggaaaaatt ttatgtttta tgaagaaaaa gttaataaat gtttatttta atgttataat      1560
     tgtggcaaat gagtctatga ggtatgacgc tgtgcttggt agagatttta tggattcttt      1620
     tggtttaaat attgatttaa gaacattaaa aattgtgaac gggcataaag ttgatcacca      1680
     gaataatggt aaaaatgata tcatagctac aagctacaaa gaaaaacaaa aaaaagtgga      1740
     cgatgaagat atcaaacacg agcaaaatga aactatattg ttaaatgata aaatcgttaa      1800
     taaggaaata gtcagtaatg aaactgttag tgatgaatta gttagtgaga aaattgttag      1860
     tccggaaacg cttggtgata aagttggtag tgatgagata gttagaaata aaataattag      1920
     tggtgaaata gttagaaatg aagtgattgg gatcgaaact gttagtgatg agatagttag      1980
     ttatggagag cttaagctcg aacctgatag tgaagaagtt gttagtgatg aaattatcta      2040
     taatcaaacc gggattgaaa aagtgattat agaagatata ggaaacagtg cagttaaaat      2100
     taataatcat gttaatgaag cgccagtgaa tagcgaaatc atgggagtgt tagaagagaa      2160
     ttttgagaag gatatcttaa caataagttg ggaagattct aacaaaagag aaaatatata      2220
     tattttaagt gaagatattg attacagcac aaagtgtgaa tttgaaaatt tatttgaaaa      2280
     tacttatgta aaagcgaaaa ggccaaatca gccaaaatta agacatgagt taagcataag      2340
     attagaaaac gacaaagtat ttaattgtac acctaggcgg ttatcttata tggaaaaaga      2400
     aaagttgcaa gaattattag acgactattt aaaagatgga atcattaggc caagttgttc      2460
     agagtatgca tcacctatag tactagtgaa gaaaaaaact ggagacatga ggttatgtat      2520
     tgattttaga agactgaaca aaattatatg tagagacaac tacccgctac cattgatcga      2580
     cgatttatta gacagactat gcggaaaaac agtattttca aagttggatc taaaaaacgg      2640
     gtattttcat gtttttgtta atgagcaatc tattaaatac acttcatttg ttaccccttt      2700
     aggacaatat gaatttctta ggatgcccat gggtttaaaa actgcgccac atgtatttca      2760
     aagatttgtt aataacatat tttgtgatat gataaaagat aataaggtaa ttgtttacat      2820
     ggatgatatt atgatagcaa gtacaaacat aaaggaacac atggagacct taaaggaagt      2880
     gtttataaga ctggtgcaaa acaaattaga gttgaaatta gataagtgtg aattttttaa      2940
     aagcagcgtt aaatatttag gatttgtggt ggatagtaaa ggcgttaggg ctgatgaaaa      3000
     agggttagaa gcggttaaat cctttccaat accaaacaaa attcagggag tacaaagttt      3060
     cctagggtta tgctcctact tcaggaggtt cattttaaac ttttctatat tagctaaacc      3120
     cttatatgat ttattgaaaa aagataagaa attcaagttt ggagaagagg agtttaagtg      3180
     ttttaatatg ttaaaagata aattgttaga ggcgccagta ctatcaatat ataattacaa      3240
     agaagaaata gaactacatt gtgatgccag cgcagtggga tttggggctg ttttatttca      3300
     aaaaaaagaa gataggaaat tacacccgat tttttatttt tctaaaagaa caaccgaagt      3360
     agagtctaaa tatcatagtt ttgagttaga aacgctagcc atcatttacg cattacgcag      3420
     atttcgtata tatctgcagg gaaaacgatt taaaataatg acagattgca actctttaac      3480
     tttaacgctt aacaaaatag atttaaatcc gagaattgct agatgggcgt tagaactaca      3540
     aaattacgat tttgagttag tgcatagatc gggcaagcaa atgcaacatg tggatgcgtt      3600
     aagcagatgt tatgaggaca ttttagttat tgaatccaat agttttgagg acaatttagt      3660
     tatttgccaa agcaaagatg acaaactggt agatattaga aagatgttag aaaaagaaga      3720
     gcacaagcta ttcgaaatga gaaatggggt catttacaga aaaacaaatg atggcagatt      3780
     agttttttat gtaccaaagg atatggaaga acatgtactt tacaaatatc atgatgagtt      3840
     gggacatgct gggagagata agatgatcga tgccattgga aagagttact ggttcccata      3900
     tattaaggaa aaagcaataa agcatatagg gaattgttta aaatgcattg ccttcgcccc      3960
     caagacgggt aagagtgaag gactattaca tagcataccg aaaggaaaca aaccgtggga      4020
     gatgatccat atagaccatt atggaccaat taatgcagga agggctaata aatatatatt      4080
     ggcggtggtt gacggatttt caaaatttgt tagactatat acagcaaaga caacaagtac      4140
     gaaagaagcg attaaggcat taaaagatta tttcagagcg tatagtagac ctaagttcat      4200
     tgtatcggac agagggagtt gttttactgc aaaagagttt gatgaatttt taaaaaatga      4260
     gggagtaacg catattaaaa tagcaacggg ttgtccgcaa gcaaatggtc aggtggaaag      4320
     gttgaataga gacttgggtc cgatgatggc aaaaatggcg gagccagaaa atggtttaca      4380
     ttgggatgtt attatagaaa atgttgaata tgcaataaac aacacacaac acaaaagcat      4440
     aaagaaattt ccaagcgaaa tgttattcgg attacaacag aaaggaaaag ttgttgatga      4500
     attaaaagaa aaattagaag agtttacaca ggtgaacacg tgtgataaaa gaaatttaga      4560
     aaatataaga aagagtggag aaatatatca aaaagaagct caaatcagaa atgaagagcg      4620
     gattaataaa aagaagaaag tatcagtaga atataaaata ggtgactatg tcatggtaaa      4680
     aaattttgat agcacaccag gagtttcaaa aaagttaata ccaagatata aagggcctta      4740
     tagtatagaa aagattttaa aaaatgatag atacttgtta aaggatgtag aaggctttca      4800
     attatctcgc aacccgtacg ttggtatctg gaatagccaa aactttaagc attggatgcg      4860
     aaaataggca ataagcatta gttataaaga tagatacaca tataaaagac agagatcggg      4920
     agctctcttt gtcaggatgg ccgagt                                           4946
//
ID   Gypsy1-I_Dya repbase;    DNA;    INV; 4257 BP.
XX
AC   chr2L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dya;
KW   Gypsy1-LTR_Dya; Gypsy1-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4257
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1028-1028 (2009).
XX
DR   Genome; chr2L; Positions 21285984 21281728.
XX
CC   'TATA' target site duplication
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..2457
FT                 /product="Gypsy1-I_Dya_1p"
FT                 /translation="MRVSEKEIKQEPSRIPISKGKQPYYTRSVAAADKQIK
FT                 MSTPLESDCEISGNENTKEMKIVQELFATSGEQCGNARSNMQNLVATSGEQ
FT                 GGNARNNMQNHVGTSGEQRGAAGLIESSSIDENTRTLKDLVQLLAIKIGAE
FT                 ERNNGCSITAESFAKIIPEFDGESMPVKNWFENFEMNAAAYDLNIKQMYVQ
FT                 PRAKMTNTAKLFLDSTYVHQYSEMRMLMETEFSRQYVCSADVHEQLRDRKK
FT                 RKQESFHEYLLQMKKIASLGNIDVRSVIRYVVDGLNMRSDFRYSLYSCKSY
FT                 KELQEQYEVFDRVVEKPFNPNEGKWTSSQKKQHEGQHDRKSHCFNCGSLDH
FT                 HRKDCKSAVKCFSCNKEGHMSRDCPGSAAGVQVVRSSSRMKNATINNVAVE
FT                 CLVDTGADVSILRKYIFNKIPNVTLERCASKLRGLGRKITCTVGYFLAEVA
FT                 VDKEMTRHNFVVVEDEDIEYDALLGFDFVSKFDFSLSADGYKFSSPLGEKA
FT                 CEEPNQMSIYNIINSDDELDVPPQFAKEVSLLINNYKAVDSVAEVPVRLRI
FT                 VPDGEIIPFRQSPSRFAIAEENDVEKQINEWLDTGIIRPSTSNFASRLVLV
FT                 NKKDGTRRICVDFRKLNSMVLRDCFPVPIIDDVLQKLQKARFFTVMDLEND
FT                 FKNDSKKFTAFITKFGLYEFNRTPFGFRNSPAVFIRYVNHVFQELMSRDVL
FT                 DLYMDDIIIHAETAEQCLEKIKLVFNRAGAFGLKIKWRKCHFLHTTTLRTE
FT                 TYGLDRKRQLRSANFRCQKTSEQSKLF"
FT   CDS           2340..3515
FT                 /product="Gypsy1-I_Dya_2p"
FT                 /translation="MSLLAHNNIEDGNIWPGQEKTAAVSKFPVPKNVRAVQ
FT                 AFLGLTGFFRKFVLNYSQIARPLTDLVRKDVCFQMAHPQMNAFHSLKDALT
FT                 KEPFLKLYIRAAKTELHTDASKDGFAAVLMQWFDGRLHPIQYWSKKTSEAE
FT                 SRQHSYILEAKAVYLAVKKFRHYLLGSPFKLVTDCSAFKQTLQKADVPRAV
FT                 TQWIVYLQDFEFAVEHRPGERLKHVDCLCRYPDRVMLVSSEITARIKVAQR
FT                 KDEMLKAIMEILESRPYEGYKMKAGLVFKEVNGNDLLVIPKSMEKEVIVEA
FT                 HSAGHFALQKTVQQLYWIPHLEQKAQQVVNNCVRCIIFNKKLGKKEGFLSC
FT                 IDKGDQPLHTLHVDHLGPMDATKTVQVHICDGGFIYKVYMAVPNENYKL"
XX
SQ   Sequence 4257 BP; 1306 A; 822 C; 1104 G; 1025 T; 0 other;
     tttgggggct cgtcctaacc tgaaaattgc aagtgacgcc gtcccgaaaa gtctcaacgt        60
     tgccccgaga agtcttaaaa gacgaagaag aagagtttga cagacgccgg ttagcaacgg       120
     ggaatgcgtg tgagtgagaa ggaaattaag caagagccgt cgcggattcc aatttcaaaa       180
     ggaaaacagc catattacac aaggtcagtg gctgcagcag acaaacagat taaaatgagt       240
     acgccgttgg aaagcgattg cgaaataagt ggaaatgaaa atacgaaaga aatgaaaatc       300
     gtgcaagaac ttttcgcaac aagcggagag caatgtggga atgcaagaag caacatgcag       360
     aaccttgtcg caacaagcgg agagcaaggt gggaatgcaa gaaacaacat gcagaatcat       420
     gtcgggacaa gtggagagca acgtggcgca gctggtttaa tcgaaagcag ctcgatcgac       480
     gaaaatacaa gaacgctgaa agatttagtg cagcttcttg ctattaagat tggagcggag       540
     gagcgaaaca acggttgctc gattacggca gaaagctttg cgaagatcat tccagagttt       600
     gacggagagt ccatgccggt taaaaattgg tttgaaaatt ttgagatgaa tgcggcagcc       660
     tacgatctga acattaagca gatgtatgtt cagcctcgcg ccaaaatgac gaacacagcg       720
     aagttgtttt tggactctac gtatgtacac caatactcag agatgcgtat gctgatggag       780
     acagagttca gtcgacaata tgtgtgcagc gcggatgtac acgagcagct ccgcgaccgc       840
     aagaaacgca agcaggaatc ttttcacgaa tacctactac agatgaaaaa gatcgcttca       900
     cttggcaaca ttgatgtacg ttcagttatc cgctatgttg ttgacggctt gaacatgaga       960
     agtgatttca gatactctct ctacagttgc aagtcttaca aagaactaca ggagcagtat      1020
     gaggtgttcg accgtgtggt cgagaagcca tttaatccta acgagggaaa gtggacgtcg      1080
     agccagaaaa agcagcacga gggacagcac gacaggaaga gtcactgctt taactgcgga      1140
     tcattagatc atcatcgtaa ggactgcaag tctgctgtaa aatgcttcag ttgcaacaaa      1200
     gagggtcaca tgtcaagaga ttgccctggg tcagctgctg gtgtccaagt cgtacgcagc      1260
     tcaagtcgca tgaaaaatgc cactatcaac aatgtggcag tggagtgtct ggtagatacg      1320
     ggagccgatg tatctatact gcgcaagtat atctttaaca agataccaaa tgttaccctg      1380
     gagagatgtg cgtcgaagct tcgtgggctg ggaaggaaga ttacgtgcac agttggctac      1440
     tttttggcgg aggttgcggt ggacaaggag atgactagac acaatttcgt cgtagtggag      1500
     gatgaagaca tcgagtatga tgcgctgctc ggttttgatt ttgtatcgaa gtttgacttt      1560
     tcgctgtcgg ccgacggata caagttttct tccccgctgg gggagaaagc ttgtgaggaa      1620
     ccaaatcaga tgagtattta caacataata aattcagatg atgaattaga tgttcctccg      1680
     cagttcgcta aagaggtgtc gctgctgatc aataactaca aggcggtgga ttcggtagcc      1740
     gaagtcccag tgaggctaag aatcgttccg gatggtgaaa tcatcccatt tcgtcaatcc      1800
     ccaagtagat ttgcgattgc cgaagagaat gacgtggaaa agcagatcaa cgaatggtta      1860
     gatactggaa tcattcgccc atctacatct aactttgcta gccgtcttgt actggtgaac      1920
     aaaaaagatg gcacacggcg tatttgcgtc gattttcgaa agctgaactc gatggttttg      1980
     agagactgtt ttcccgttcc tataatcgac gacgttctgc aaaagctgca aaaagcacgc      2040
     ttttttactg taatggactt ggagaatgat ttcaaaaatg atagcaaaaa attcacagcc      2100
     ttcatcacca aattcggatt gtacgaattc aatagaaccc cgtttggatt tcggaactcg      2160
     ccagctgttt ttattcgtta cgttaatcac gtgttccaag agctgatgag cagagatgta      2220
     ctcgacttgt acatggatga tataattatc cacgccgaga ctgcagagca atgtttggaa      2280
     aagattaaac tcgtgtttaa cagagctgga gcgtttggcc tgaagataaa gtggcgaaaa      2340
     tgtcacttct tgcacacaac aacattgagg acggaaacat atggcctgga caggaaaaga      2400
     cagctgcggt cagcaaattt ccggtgccaa aaaacgtcag agcagtccaa gcttttttag      2460
     ggctgactgg atttttcaga aaatttgtat tgaattattc gcagattgca cgcccattaa      2520
     ctgacctggt gcgaaaagat gtttgctttc aaatggccca tccgcagatg aatgcattcc      2580
     atagtttgaa ggatgcgttg acaaaggaac cctttttaaa gttgtatatc agagcggcca      2640
     aaactgaatt acacacggat gcatcaaaag atggatttgc agcggtttta atgcagtggt      2700
     tcgatggcag actccatcca atacaatact ggagtaagaa gacgtcagaa gctgagtccc      2760
     gccagcacag ttatatccta gaagcaaagg ccgtttatct agcggtgaag aaatttagac      2820
     attatctgct gggatcgccg tttaagctgg ttacggattg ctctgctttt aaacaaaccc      2880
     tacagaaagc ggatgtgccg agggcagtca cgcagtggat tgtttacctg caggatttcg      2940
     agtttgcagt ggaacatcgc cctggggaac ggttgaagca tgtggactgc ctttgtcgct      3000
     atcccgatcg tgtgatgctc gtgtcctctg agatcacagc tcgaatcaaa gtcgcacaaa      3060
     gaaaagatga gatgctaaag gcaattatgg aaattctgga gagtcggcca tatgagggct      3120
     acaagatgaa agctggactt gtcttcaagg aggtgaacgg caatgacctc cttgtgatcc      3180
     cgaaatcgat ggagaaagaa gtaattgttg aagcccatag tgcaggtcat tttgcactac      3240
     agaaaactgt tcaacaattg tattggattc ctcacttaga acagaaggct cagcaggtag      3300
     tgaacaactg tgtgagatgc atcattttca acaagaaact tggcaagaag gaaggattcc      3360
     taagctgtat tgataaaggt gatcaacccc ttcacacgct gcacgttgat catttgggcc      3420
     ccatggatgc tacgaaaaca gtacaagtac atatttgcga tggtggattc atttacaaag      3480
     tttatatggc tgttcccaac gaaaactaca agctgtgagg agacactgaa gaagttgaag      3540
     atttggtcag aagtttttgg caaccccgtg aggatggttt cggacagagg ctccgctttc      3600
     acagccaact tgtttgcgga acatatgaag gaaaacggaa tcgagcacgt ttggagtaca      3660
     acaggggttc cacgtggaaa tggacaagtt gaaagggtga atcgtacaat tttgtcgatt      3720
     atttcaaaga tgtcggcgga tgaaccagcc aagtggttta aggcagtgcc agacgtgcag      3780
     agagcggtca attcacacgt acatgcatca accaagaagt caccatttga gctgctattc      3840
     ggagtgcaaa tgaacaataa gcttcagctt ttggaggagg agatgtattt gaattttgac      3900
     gaccaacgac agcaactgag aaaggatgca aagatcgaga ttcaacgcgc acaggaatct      3960
     tataaaagga attttgacct taagcggaaa ccagaagtcg catataaagt aggagaccta      4020
     gtcgctatac gccggacaca atttgttgcg ggaaagaagt tggctggaga atatatggga      4080
     ccgtacgaag ttttaactgt caagaggaac ggcagatacg aagttcgaaa ggcagcaggt      4140
     tttgaaggcc catgtaagac ttccacaagt tgtgattaca tgaagttgtg gaggtatgtc      4200
     caggacaatg aggatgattg gtcatctggg acagatgaat agtcaggaat ggccgaa         4257
//
ID   GYPSY1-LTR_AG repbase;    DNA;    INV; 146 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY1-LTR_AG is an LTR of the GYPSY1_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY1-I_AG; GYPSY1-LTR_AG; GYPSY1_AG; Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-146
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "GYPSY1_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 74-74 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY1-LTR is a long terminal repeat of GYPSY1_AG (it internal
CC   portion is deposited as GYPSY1-I_AG).
XX
SQ   Sequence 146 BP; 39 A; 27 C; 29 G; 51 T; 0 other;
     tgtggtggat tgcttatagc aatgtcttag ttgtaatcaa gtagccattg gttacagcaa        60
     ccgtggttac actgaatatc gaataaatgt agttagtctt agttcactct tagaacggtt       120
     tacatcgtct tttaatcgct cccaca                                            146
//
ID   Gypsy1-LTR_AP repbase;    DNA;    INV; 321 BP.
XX
AC   Contig19874;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1AP;
KW   Gypsy1-I_AP; Gypsy1-LTR_AP.
XX
NM   Gypsy1-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-321
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 438-438 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 321 BP; 70 A; 84 C; 54 G; 113 T; 0 other;
     tgtggtgacc cacagcgaca atattgttac cgcggtatca gcgcgtcagc cgccgcaagc        60
     tgcgcgcccc tcctttaatt ttatataaaa cactacctcc atgacgcgac cgttgccgac       120
     cgaccctaac ttgtttttcg ttcgaacgta tccgtcgcaa cgctcgtact gcgtcgtttc       180
     taattgtttc gcgtctaatt gtttcgtccc gctacctaaa accacgtgta ttgtttcgcc       240
     ttttaatatc aaattttact gtttattttg actacaatta tactctactt gaattattta       300
     tttggttgta atttatttcc a                                                 321
//
ID   Gypsy1-LTR_DM repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy97_DM;
KW   Gypsy1-LTR_DM; Gypsy1-I_DM.
XX
NM   Gypsy1-LTR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-493
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 472-472 (2009).
XX
RN   [2]
RP   1-493
RA   Jurka J.;
RT   "Tentative consensus sequence and correction of the internal
RT   portion in response to comments by Silke Jensen.";
RL   Direct Submission to Repbase Update (10-FEB-2011).
XX
RN   [3]
RP   1-493
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (07-DEC-2019).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 493 BP; 139 A; 138 C; 98 G; 118 T; 0 other;
     agttaactaa gttaaccgga ctgatcgtcc gcacaccagc accggtcaaa ttgctgacca        60
     agcatttggc cggaagctca tgcatagccg gcagaagctc tgcgcattgg cagaggccgc       120
     tatgatgttt ttccctttgt tagcttatag tcagttcgtt ttggatattc aaagaataaa       180
     gagcaatcgc tcataaagct tactccggca actgtcgtta tcattataaa ttaccatagc       240
     tatctgagtc cctaggccag aagccaaaag gaagacagtc atcttcccaa cataatcagc       300
     gtaactcttc aagtgaactt actacctcct actcccgtac gaggagcacc tgaagataat       360
     cagccaaccg acaacatacc agtgacagcg gcgagagatc ccctctacgg ctcttcacac       420
     ttaccttgac taccagtgac ccagtgactg cggcgaggga tcccctctgc agcaccccac       480
     acttatatta att                                                          493
//
ID   Gypsy1-LTR_Dmoj repbase;    DNA;    INV; 1128 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   01-OCT-2011 (Rel. 17.07, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dmoj;
KW   Gypsy1-LTR_Dmoj; Gypsy1-I_Dmoj.
XX
NM   Gypsy1-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1128
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1029-1029 (2009).
XX
RN   [3]
RP   1-1128
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (30-SEP-2011).
XX
DR   [3] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 1128 BP; 307 A; 217 C; 289 G; 315 T; 0 other;
     tgtaaggcgg cctttttgcc caccttacat gtttgtaggt aataagtaaa gatatcgaat        60
     gaaatagagt tttgttatgg tgaatgggat ttgaataagg atttgaggca tagtttgatt       120
     ttgtagtgat taagggaaat gaaatggatt ttgttgcaga ttttgatttg gtagatagta       180
     aggttatatt ctgaagtgta ttattagaat aagagttagt ttgtaagagt ggatttcgat       240
     atagattttg gtttacattt tgaagtcatt tataagttga taggagttag ttgttattag       300
     aataagcgtt agttcgtaag gtagcactaa gtagttgata attagatgta agtgccgtag       360
     cgattagcct tagaaagtaa gcgaaattca aatgagtggg cgggcacgcg atcagcaatg       420
     caaccgtgca gctcgaaagc tcgcggtggt gaattgcatt gctggtcgcg tggtaaaatc       480
     tgcacagcgg cagaagagga ttgaaagctg cgtgcagtat ttagtcagtc tggagctctc       540
     gatgtgagca gacgcgctca aaaggggaaa atagaactaa ctagcaggta taaaggttat       600
     aaggcgacaa gtttaataaa gtaaggaaat gcacgtagag atggttgcgt atttattcgt       660
     agctagttta ataatcaatt tgttagttta ctaatcataa ctaacactaa ctggtagttt       720
     gaacgagggc aaatcccgtt cgccagaagg ttaaaactct ggcagtaaaa tcgcgtggtc       780
     ttgagtgagc gccggcggca acgctgggcg ttcctcgatc cgcggtctac cgatcgtagt       840
     aaccccacta acattccacg acacgctttc gcagccccga cccccgcaat ctggagtgcg       900
     cttgatcgcg ccactcgatt gcggccgccc tcccgcgtgc aaacgcgtgg gcgtgggcgt       960
     ggtcggcgag ctcaggccac gtggtcgcct aacctataca acttcccccc ccccctctcc      1020
     catttctcta actcaatacg tcccgtatct acttacaaat ttcttgtgag ttatggccct      1080
     gggcagactg agactctgac cccggctgga aaataatgta accttaca                   1128
//
ID   Gypsy1-LTR_Dpse repbase;    DNA;    INV; 201 BP.
XX
AC   Unknown_group_134;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dpse;
KW   Gypsy1-I_Dpse; Gypsy1-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-201
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1030-1030 (2009).
XX
DR   Genome; Unknown_group_134; Positions      17     217.
XX
SQ   Sequence 201 BP; 49 A; 65 C; 64 G; 23 T; 0 other;
     tgcaggacga agggaacaga cacccactga ctcgcgggaa cgaatgggac tcgccccttt        60
     gggccgagtg gaacctggcc ggtcaaggtc gggcagccac ccctccagca gtacaccacg       120
     aggacgaatc cggggacggt gctgaccaca ctactccgac gtgtcccacg caagcgatac       180
     aggcggggaa gtaggacccc a                                                 201
//
ID   Gypsy1-LTR_DV repbase;    DNA;    INV; 227 BP.
XX
AC   scaffold_12963;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_DV;
KW   Gypsy1-I_DV; Gypsy1-LTR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-227
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3095-3095 (2009).
XX
DR   Genome; scaffold_12963; Positions 18180033 18179807.
XX
SQ   Sequence 227 BP; 93 A; 34 C; 47 G; 53 T; 0 other;
     tgtaatagga taagagcatc attggtaacc ctagccaggg tattatagtg tcactatcga        60
     tgttaattat aacagtacga taagtaaata tcgataaaga aaagcggctg cagagaagaa       120
     gtggaaggca gtctctctac agtactagca gtaagaagac gtgttgttaa aaataaaaag       180
     gcaacccgaa cataagttaa atcaacgaag aaaatcatac tattaca                     227
//
ID   Gypsy1-LTR_Dya repbase;    DNA;    INV; 425 BP.
XX
AC   chr2L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1_Dya;
KW   Gypsy1-I_Dya; Gypsy1-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-425
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1031-1031 (2009).
XX
DR   Genome; chr2L; Positions 21281727 21281303.
XX
SQ   Sequence 425 BP; 185 A; 68 C; 110 G; 62 T; 0 other;
     tgtaagacgg ggtattggga cttctcaaca aaagcagtac tcgagtagat ttaagaagag        60
     atgcagaaaa agtattaaga cagcagagca acagcagagc gacagaagag agcagtagaa       120
     acagcagagc gacagaagag agcagtagaa acagcagagc gacagaagag aatagcgaca       180
     gcggagaagc aggagaagcg acagcagagc agcagcagag cgacagcaga acagcagcag       240
     agcgagagaa gaggattcgg agagtagaag tcagcagata cggacgtcag agaacgagtt       300
     aagaaagcag aaaaatcaaa agcagaaaac ttaaactaaa cttgtaacat tcatcgttaa       360
     taataatact gatatttaga tacctataat aataaaaacc aaagttgagt aaatctcatc       420
     ttaca                                                                   425
//
ID   Gypsy1-NVi_I repbase;    DNA;    INV; 5219 BP.
XX
AC   DS265623;
XX
DT   04-NOV-2007 (Rel. 12.11, Created)
DT   04-DEC-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy1-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5219
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1168-1168 (2007).
XX
DR   Genome; DS265623; Positions  469892  475110.
XX
CC   Positions [2641-3090] - Reverse transcriptase
CC   Positions [4129-4641] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2611..5061
FT                 /product="Gypsy1-NVi_I_1p"
FT                 /translation="MALKKDGSYRPCGVYCALNAQTVPDKYPTAHLYDCTS
FT                 ELHGKKIFSSLDLLKAFNQIPIAPEDIEKTAIITPFGLFEFMYMTFGLRNA
FT                 SQTFQRYINRVLGDLKFVFIYIDDILIASESVEEHFEHLRIVFERLNKFSL
FT                 RINVDKCTFVVEELVFLGYSINSQGIRPTQEKVKAVLNFPKPNTVVELRRF
FT                 LGMVNFYHRNLPHAAEAQVPLNAYFRESRKNDKRPIEWTAETSKAFEQIKS
FT                 DFANASLLVHPRCGAELRLVTDASDVAMGAVLEQKSLSNEWEPLAFFSQKF
FT                 TPAQQLYSTYDRELTAMFEAVKYFSYIVEGCDFAILTDHKPLIYALVQNNE
FT                 KAPPRRLRQLGYISQFTTRIEHVKGSDNVVADALSRVETIRFPLEFDLADL
FT                 AAKQEADQQLKEICESPNYPLTLKRLQLGPEHTVIYCELTGESLRPYVPQS
FT                 LRRSVFEFFHNTAHPGPKVSDRLIRQRYVWPNMHRDIAAWCKNCLACQQSK
FT                 ISRHVKTFPEHFVAPDGRFDHVHIDIVGPLPVRDGYQYLLTMIDRFSRWVE
FT                 AVPLQETSAQTVARAFFDTWVSRFGAPKVITSDQGAQFESRLFTALLSLIG
FT                 CERIRTTAYHPAANGMIERWHRTLKAALMCHKDDDWLRTLSTVLLGLRCHV
FT                 RADTEASPAEFLYGTTLRLPGEFFIPEDITPDPQIFVEEFREHMRLVRPIP
FT                 VAHHYKKRIFYFKELHNCTHVHMRNMAKKSLERPYSGPYKILSRESDRVFK
FT                 IEVNGAPRTVSVELLKPAFFIAENLVDSGGVSNDSSKGNQPPVPSPVLKTY
FT                 PAKKIRFSSDTKAQA"
XX
SQ   Sequence 5219 BP; 1255 A; 1405 C; 1181 G; 1378 T; 0 other;
     ttggtgaccc cgacttcaag aagacgagcg agtggactct cgccccgccg tctccaggag        60
     caccgctttt tccggaattg catcatccac gccggcggct ttcttgccgc ggtcagcctg       120
     gctaggcgat cgccgtgcac cgctgccgtg ttcatcattt tcttcagcgg ccttgttgcc       180
     gcggtcagcc tctcaggcga ccgccttatc cagtcttcga gctcttcctc gtcaacggcg       240
     ttcacgccgc ggtcagcctt tcaaggcgac cgcccctgca gcaacgtagt gcagcgtctc       300
     gtcggcgtcc ttgccgcggt cagcctagag gcgaccgcct gtgcagcatc atcgtccagc       360
     tcttcagcgg catcataagc cgcggtcagc ctctcctggc gaccgcattc tccggcttcg       420
     ccgatcatcg ttagcggctt tttagccgcg gtcagcctct caaggcgact gcctcgcagc       480
     catctcctgc agcatcacta ccagctactt ctcgtcggtc ggcggcgcac atctcgcagc       540
     agttcgacct ggacatcatc cacgagtctt caagcatcgt tagcggcttt cagcgcattc       600
     tcgcaaggta tctcagtgtt agctttaagt tcgattccaa gaattcattc aaattgaatt       660
     tggttcgctt ccgagaattg ggcggccatc ttggatttta gcgcgcggtt ttctcgtggc       720
     gctcgcgtct cacgggttgc ggtgttcagg cgcggcgctc gtgcatcacg ggttgcagct       780
     gttaggcgcg tgctcgcgcg ggttgcgctc agcgctcact cttcgcggaa tttaattaga       840
     gtagcggttc cccaaccatc gcaaatttca cgcagcggcg ttttaatttt aagaatttgt       900
     aaccgggcgt gcgttcttgt tcacgatctc gtctgcgcac gttgatcgta aatttaaggt       960
     tagttctagt tttaagttag cttttctcac atttgtgata cgcctgcgtg cgtgcagtag      1020
     gtcaatttgt actacgtact gcgacgtata taggtagcaa tccataaaat gccggaatca      1080
     tcagaggaaa gagcagatcg cctgcagggc agagcttgat gcggccaggg ctgctgcgaa      1140
     ccaggcaccc ggtcgtgttg aggcgtaccg tactccaaaa ctcccggtgt ttattaaggc      1200
     ggatccagcc atgtggttta cacaggtgga agcctcgttt cgtcacgcgc acataacggt      1260
     tgagggaacc aaagcagatc acattatcgc agcgttagat catgaggcaa tgactgccat      1320
     tagagacatt gctctcacag atccccaacc tcctgacgtt tacacgcaga ttaaacagag      1380
     attagtttct tcctttgcgg cctcggcaga gagcaagctc cgtaggcttc tcaaaggcca      1440
     agtccttaat gatggcaaac catcactcat tttaaacagg ctcagaagct tagacgacgg      1500
     cgccaaatgc gatgacgcaa ttatcagatc tgtctttctt gaacagcttc agcccaacca      1560
     cagagcaatc gttctcgcgt ccgacatcag cgatctcaac aaattagcga ccttggcaga      1620
     caaaattgtt gagaactcac cgtccgattc tcgcttgtcg gcggtcaatg tcaactcaga      1680
     catcgcgtcg ttagcttcag aagtcaagcg ccttgctgac tccttcgaca aagtttccac      1740
     tagattagga aagctagaaa actcgtttaa agcttccaaa ggtgaggatc gatcaggttc      1800
     caattcaggc gaattcaaac gtccttcacg ttcgcgttcc agttctcgac attcatcagg      1860
     actgtgtttt gcacacagaa agtatccaga cagtcccact tcatgcaaga agtggtgtac      1920
     agagtactct aagtgggctt caaaaaacta aatgaacctt tccttgctga gacgtcaggg      1980
     gatggttcct ccggttcgaa acgtctcacc cttaaggacc taaaatcagg tcgcaggttt      2040
     cttatagatt cgggtgcaga aatctctgtt ctgccagcca gttacaaagt caattcaaaa      2100
     ccctcatccc gcaagcttta tgcggccaat gacacgacta ttgacacatt tggggaaacg      2160
     ttcctattgc tagatttagg tctaaaccgt cccatctcgt ggaattttgt tatcgcgtcc      2220
     gtgcctcatg cgatcatcgg ggctgacatt ttataccact acggtttaac tgtagatatt      2280
     cgcaaccgtc gtctcgttga ctcggttacg tcactatcat ccgtaggttt aatcaaaata      2340
     gttccagttc tcggaatcca ttcggtagct tccagctcca aatgcgctca gctgttagcc      2400
     cagtttccga aaataactgg ctcaggtccg catgatcccc agttcaaacc ggacattgtt      2460
     caccacatct ataccacagg ccctcctgtc tctgagcgtc cacgtcgact ttccgcggaa      2520
     aagctcagag cagcgaaagc tcaattcaaa gcctggcagg atgccggcat ctgtaggcct      2580
     ggcagcggtc cgtacgctag ccagttacac atggccttaa aaaaagatgg atcttatcgt      2640
     ccttgtggcg tgtactgtgc tctaaacgca cagaccgtcc ctgacaaata ccctacagcg      2700
     cacttatacg attgtaccag tgagttgcat ggaaagaaaa ttttttcttc gctagatctc      2760
     ttaaaagctt tcaatcagat tcctatcgcc cccgaagaca ttgaaaagac tgcgattatc      2820
     acgcccttcg gtttatttga attcatgtac atgacctttg gtctgcgcaa tgccagccaa      2880
     actttccaaa ggtacatcaa cagagtgtta ggagatctga aatttgtatt catctatatt      2940
     gacgatatcc tgatcgcctc agaatccgta gaagaacact tcgaacactt gcgtatagtg      3000
     ttcgaacgtt taaacaaatt tagtttgcgc attaatgtcg ataagtgtac atttgttgtt      3060
     gaggaacttg tatttttagg atattcaatc aactcgcaag gcattcgtcc tactcaggag      3120
     aaggtcaaag cggtgttgaa ctttcccaaa cccaacactg tagttgagct gcgtcgcttt      3180
     ctcggcatgg tgaactttta tcaccgcaac ctccctcatg cggctgaggc ccaagtccct      3240
     cttaatgcct actttcgcga gtcacgcaaa aatgacaagc gtccaatcga atggactgca      3300
     gaaaccagca aagccttcga gcaaatcaaa tctgattttg ccaatgcttc cttgcttgta      3360
     catcctcgct gtggtgcaga gcttcgcctc gtgacagatg cttctgacgt agcgatgggc      3420
     gccgtgctag aacagaaatc actctcgaac gagtgggaac ctttagcttt cttttctcaa      3480
     aaatttaccc cagctcagca gttgtacagc acctacgaca gggaactcac tgcaatgttt      3540
     gaagcagtga aatatttttc ttacattgtt gagggctgtg acttcgcaat tcttaccgat      3600
     cacaagccac tcatctacgc ccttgtacaa aacaacgaga aagctcctcc gcgtcgcttg      3660
     cgccagttag gatacatttc tcagttcact acccgcattg aacacgttaa aggttcagac      3720
     aacgtagtgg cggatgctct ctctagggta gaaaccattc gtttccccct agaattcgac      3780
     ctggccgatt tagcagccaa acaggaagcg gatcaacagc taaaagagat ttgtgagtct      3840
     ccgaactacc ctcttactct taagcgtctc cagcttggtc cagaacacac agtcatttac      3900
     tgtgaattga ctggcgagag cctgcgtccg tatgtacctc aatctttgcg tagatcagtg      3960
     ttcgaatttt tccacaatac cgctcaccct ggtcccaagg tgtctgatcg tctcatccga      4020
     caacgatatg tatggccaaa catgcatcgc gacattgctg catggtgcaa aaattgtctt      4080
     gcctgtcagc aatccaaaat ctccaggcat gttaaaacgt ttcctgagca ttttgttgct      4140
     ccggacggcc gctttgacca cgttcatatc gatatcgttg ggccgttacc ggtgcgcgac      4200
     ggttaccaat atttgctaac catgatcgat cgtttctcta ggtgggttga agctgttccc      4260
     cttcaggaaa cctcagccca gaccgtagct cgcgcattct ttgacacatg ggtgtcgcgt      4320
     ttcggcgcac ccaaggtcat cacttcggat caaggagcac aatttgagtc gagactcttt      4380
     actgcattat tatccttgat cggttgtgag cgcattcgca ccaccgcgta ccacccagcc      4440
     gctaacggca tgatcgaacg gtggcatcgc acgttgaaag ctgcattgat gtgtcacaaa      4500
     gatgacgact ggctcagaac tctctccact gttctattag gcttacgttg ccatgtgaga      4560
     gccgacaccg aggcttctcc ggccgaattc ctgtacggta ccacgctacg gttacctggc      4620
     gaattcttca ttccggaaga cattacgccc gatccgcaaa tctttgtaga ggagttccgt      4680
     gagcacatgc gcctagttcg tcccatacca gtcgcacatc actacaaaaa acgcatcttc      4740
     tattttaaag agcttcacaa ttgcacccat gttcacatgc ggaacatggc caagaagtct      4800
     ctcgaacgac cttactcagg tccatataag attctgtctc gcgaatccga tcgtgtattc      4860
     aaaatcgagg tcaacggtgc ccctcgtacc gtttcagtag agcttttaaa gcccgcattc      4920
     tttatagcgg aaaatttagt cgattcagga ggagtatcca acgacagttc gaagggcaat      4980
     cagccacctg tccctagtcc ggtactcaaa acttatcctg ccaaaaaaat aagattctcg      5040
     tccgatacca aagcgcaagc ttagctttgc gattcagttc ataagcagcg tttgtatttt      5100
     tatactcttg tattaacagt tgtaagcaac caatgtatat atgttcatgc gattcttggg      5160
     tctcaaccct tctggtgcag agcttgcaag ttgatcagca agaatctcgg gggggagtg       5219
//
ID   Gypsy1-NVi_LTR repbase;    DNA;    INV; 259 BP.
XX
AC   DS265623;
XX
DT   03-NOV-2007 (Rel. 12.11, Created)
DT   04-DEC-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from parasitic wasp: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-259
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1169-1169 (2007).
XX
DR   Genome; DS265623; Positions  469633  469891.
XX
SQ   Sequence 259 BP; 65 A; 62 C; 78 G; 54 T; 0 other;
     tgtggggagc tcccttggca gccctgcgta agccaggagt ggggatgtcg gccatgttgg        60
     ctagagagag ggagagagaa cgaacgagcg catgtcgcgg cctgcgagcc gcataacgtt       120
     cgagacagtt gatctaacgg gatattctaa taaaagaaag tgttattcca gaggaagctg       180
     gtggccttta ttcatcctgg accccatcct cgagagagta ggactctcgg catcgtcatc       240
     ccagacgcat aatcctaca                                                    259
//
ID   GYPSY10-I_AG repbase;    DNA;    INV; 6242 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY10-I_AG is an internal portion of retrotransposon GYPSY10_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY10-I_AG; GYPSY10-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY10_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6242
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY10_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 162-162 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY10_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY10-I_AG consensus was reconstructed after multiple
CC   alignment of 7 copies.
CC   The consensus encodes the 438-aa GYPSY10_AG1p gag-like protein
CC   (pos. 1258-2571) and the 1250-aa GYPSY10_AG2p (pos. 2445-6194).
CC   The sequence of the LTRs flanking GYPSY10-I_AG is deposited as
CC   GYPSY10-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1258..2571
FT                 /product="GYPSY10_AG1p"
FT                 /translation="IIYNSFYMTKLKGIVRRLELINKTLQQNQGRVRQCAL
FT                 TTYRLQVDEIYSVFRKEVGTNYDKYDETEIKFYNNIIQNLITNIIERINKE
FT                 TTNNSDDLNETLKTSKKLTLKTTTHIIISLLAAYKRQKQFVPIAHEAIKTN
FT                 TSVDANNLPNMDLLKIINTATNAIPTFSGRDDEARAMLAALEMLKESVDEQ
FT                 HHRIIVQAVESKLKGKGRKIIGTTVNRVDEIINKIKTHLKKTESPEDIASA
FT                 IHATKQKTTPKDFGEEIQALTEELERAYLNEKMDPELASEKTKKIAMTAFG
FT                 KGLKKELHQGLVLSGTIPSLEAAIKAIDIMDKLSQNSQERKTNKWQNGQDN
FT                 RYNSSNQRQPNNPRNNEQRSNNNWRAQQPQTGRQGNAQNRQSTQGTGYNTQ
FT                 NRQSASPNFLGQREPQRAVHCTQVETQNPQVDQPSTSQYGQHTQ"
FT   CDS           2445..6194
FT                 /product="GYPSY10_AG2p"
FT                 /translation="AIRQPKFFRATRATKSSALHSGGDPEPTGGPALHKPI
FT                 RATYTINVQKSNFIKTRLGLADSICNLFVDSGSDISIIKGNKVRPTQTYKP
FT                 KDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNFKIPADGILG
FT                 RDFFMDHRCIINYDTWIFSVKHDGEFLETPIEDTINDKTLIPPRCEVIRKL
FT                 DKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNISH
FT                 IKTIPLNEFEIVKTNNHKNENRLAIIKELIRKENISEDTDTSFEQLLLSYN
FT                 DIFHLPNDHLTTNNFYKQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIEKML
FT                 QDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPR
FT                 IDSILDQLGRAKFFSTLDLMSGFHQIPLEESSKKYTAFSSTDGHYQFKRLP
FT                 FGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVVVGASENHHLKNLEKVF
FT                 DRLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQ
FT                 NADDVRRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEY
FT                 LKNTLISPQVLQYPDFSKPFILTTDASTMACGAVLAQEHGGKDMPICFASR
FT                 TFTKGEANKAIIEKELAAIHWAIMHFKHYLYGKKFTVKTDHRPIVYLFGMK
FT                 NPSSKLTRMRLDLEEFDFTVEFVKGKQNVVADALSRIKITSDEIKSINVIT
FT                 KSMSKPVTSDNVLGNTSESDQLKMFHALAYDEVKDLPKLESSVKKNEDTIE
FT                 LIGKILNKRKSKELLSVRDIHLKTDIGLQEPLLVKDFQRRKEKSAIVQFIK
FT                 NIEKKLVMKSITQLAISETDEIFKEVHPNELKQIANNHLKNIQILIYTKPQ
FT                 KITNEKTINDILDKVHNTPTGGHIGQYKMYKKIRREYSWNKMKKTIKEFLD
FT                 KCLTCKLNKHQTKTAEPFVKTDTPNTPFEAVSIDTVGPFQKTNNNNRYAVT
FT                 IQCNLTKHVTVIAIPNKEANTVARAVIEKIMLIYGTNIKKFRTDMGTEYKN
FT                 EIFKNISEILKIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWD
FT                 DWINYYSFAYNTTPNLDHGYTPFELVFGRNERITPNVKDTYSPLYNYDDYS
FT                 KEFKYRLKIAHNRTRKHIEQVKFKLLKEQQNINQVNFEIGDQIALTNENRT
FT                 KLDPVYKGPYKVKEINGPNMIIENTEGVVQKIHKNRAIKL"
XX
SQ   Sequence 6242 BP; 2560 A; 1140 C; 1104 G; 1438 T; 0 other;
     tggcgaccgt gacagcgtag caagaacaaa gctacaagaa cattaaagtg gagtaaaagc        60
     taaagtgcag tgctgtgtaa aaagcaagtt acgcgcaaag tgcggtgcgg aaaaatcgag       120
     tgaaaaagtt aaagtacaat actgtaaaaa gcaagttatg cgcaaagtgc tgtgcaggaa       180
     aattgacagt gcccgaaaaa aaaaataaac cctttaagca tatacattac aagtgaataa       240
     taagcaagac tgaacaagtg gataaaaaga actaaaagtg cagtgagaat aagtgtatat       300
     aaagatcgat taacgatcat taggccatca gaagtcacct gcccaatgta catccaacac       360
     tcggacgctg cgataacagt aaagcacccg agcgacggtt ggatcagcga cgaagacaac       420
     acggattttg acggaccgtc agagccagag gacccagcga tcgtagaggc acggcgtctt       480
     acgtggaaag ccatcgactc cgtggagcaa accacaaacc taaccccaga ggaggagttc       540
     gaggcgaagc agccctaccg gccaacacac gaagacatct gcagttgcat ccgggacaca       600
     aacgcgacgc tgaggatcct ggtcaaccta ggcgtggagg taccgtacga tcttttagaa       660
     gaacttacag cggcggtcag ttgctatatt gagggagtag tcgacacgca attgggtcta       720
     gaactcattt cagacgtcga ctacgatctc aacctagtag cttgcggtaa gtcttaccag       780
     cacgcctgga gaacaacggt gttcgacaga ctagaagcgc agctaaggcg ctaagaagaa       840
     tgtgcttacc tcgggaaccg aaacctaaag ctgtagtcct cacggaggag gaatgatttc       900
     ctgtaatcca agagataagg caactcaatg atttcctgga tcattatgag gattaggaaa       960
     ataaaataac attatgcatt gaaaaaaaaa taatattctt cttctgaaag caaatttgaa      1020
     agaaaatatt tttttccact ttgaagattt ttcaccttga aaaaaaaaaa aaaaaaaaaa      1080
     aaaatatata tatatatata tatatatata tatatatata cgtatatata tttaataata      1140
     atatttttcg tctaaaagta atttggaaag aaagaaaaga tttttacttc aacggttttt      1200
     tcaccttgga aaaaaaatat atatatatga tagtaatata tatttttttt taactgaata      1260
     atatataatt cattttacat gactaaactg aagggtattg taagaagatt agaattaatc      1320
     aacaaaacat tgcagcaaaa tcagggaaga gtaaggcagt gtgctctaac cacatacaga      1380
     ctacaggtgg acgaaatata ctccgtattt aggaaagaag tagggacaaa ctacgacaaa      1440
     tacgacgaga cagaaattaa attttacaat aatatcattc aaaatttaat cactaacata      1500
     atcgaaagaa ttaacaaaga gacaactaac aactcagacg atttaaacga aactttgaaa      1560
     acaagtaaga aactaacatt aaagaccaca actcacataa tcatatcact tttagctgca      1620
     tacaaaagac aaaaacaatt cgttcccatt gctcacgaag caataaaaac aaatacaagc      1680
     gtagacgcaa ataacctacc caacatggat ctattaaaaa tcatcaatac ggcaaccaat      1740
     gccataccaa cattcagcgg tagagatgac gaagccaggg caatgctagc tgcattagaa      1800
     atgctaaaag aatcagttga tgaacaacat catcgcataa tagtgcaagc tgttgaatca      1860
     aaactaaagg ggaagggaag aaaaatcata ggtacaacgg ttaatagagt cgacgaaata      1920
     ataaacaaaa tcaagactca tttgaaaaaa accgaatcac cagaagatat agcctcagca      1980
     atacatgcca caaagcaaaa aaccacaccg aaggattttg gtgaggaaat tcaagcactg      2040
     acagaagaac tagaacgggc atatctcaat gaaaaaatgg atccagaatt agcttctgaa      2100
     aaaaccaaaa aaatcgctat gacagctttt ggaaaaggac taaaaaagga actacatcaa      2160
     gggctagttt tgtcaggtac aatccccagc ctagaagctg ctatcaaagc aattgatatc      2220
     atggacaaac taagtcaaaa ctcacaggag agaaagacga ataaatggca gaatggtcag      2280
     gacaacagat ataatagttc caaccaacga cagcccaata atccaagaaa caatgaacaa      2340
     cgctcaaata acaactggag ggcacaacag ccacaaaccg ggagacaagg gaatgcccaa      2400
     aatagacagt ctacacaggg aacagggtat aatactcaaa ataggcaatc cgccagccca      2460
     aattttttag ggcaacgcga gccacaaaga gcagtgcatt gcactcaggt ggagacccag      2520
     aacccacagg tggaccagcc ctccacaagc caatacgggc aacatacaca ataaatgtgc      2580
     aaaaatcaaa ttttataaag acaagattag ggctagcaga ttcaatatgc aacctatttg      2640
     tagattcagg ttccgacatt tctatcatca aaggcaacaa agtaagacct acacaaactt      2700
     acaaaccaaa agatatagtg gatatcataa gcgtaggaga aggaacaata accactcatg      2760
     ggtccacaat tacggatgta atagtggagg gaaagaaaat ccaacaatta tttcacatcg      2820
     taccagacaa cttcaagata ccggcagatg gtatacttgg tagagatttt tttatggatc      2880
     accgatgtat aataaattat gatacttgga ttttctctgt aaaacacgat ggagagtttt      2940
     tggaaacacc cattgaagat actatcaatg acaaaacact catacctccc agatgtgaag      3000
     taattagaaa actagataag ttaaaagaat tagatacgga tgcggtagta tgcgcagagc      3060
     aactgcaaga agacgttctt gtaggaaact gcattgtaaa taaaaactac ccatttatta      3120
     aaataatcaa tacttctaat aaagctaaat tagtaaacat tagccatatc aaaacaatac      3180
     ctttaaatga atttgaaatc gtaaaaacta ataatcataa gaatgaaaat aggttagcaa      3240
     tcataaagga attaatccga aaggaaaaca tttccgaaga tacagataca tcttttgaac      3300
     aattactgtt aagctacaat gatatttttc acctacctaa tgatcattta actacaaata      3360
     atttttataa acaagatata aaattagaag ataaaagacc cgtgtacata ccgaattata      3420
     aacaaaatca ttcccaagga ccagaaatca aaaagcaaat tgaaaaaatg cttcaagatg      3480
     atgtaataga acactcggtg tcacattaca attcacccat cttactagta ccgaaaaagt      3540
     cctcagatga gaaaaaatgg agattagtag tcgattttag acagcttaac aaaaagctgc      3600
     tccctgataa atttccacta cctagaatag actccatatt agatcagcta gggcgagcaa      3660
     aattttttag cacattagat ctcatgtcag gatttcatca aataccactg gaagaatcat      3720
     ctaaaaagta tacagctttt tcaagcacgg atggtcacta tcaatttaaa cgattacctt      3780
     ttggattgaa catttctcca aatagttttc aacgaatgat gaccatagcc atgacaggcc      3840
     tcacgccaga atgcgctttc gtatacgttg atgatattgt agttgtagga gcttcggaaa      3900
     atcaccatct aaaaaattta gaaaaagttt tcgacagact aagacactac aacctcaaac      3960
     taaacccaga gaaaagttgc tttttcaaaa aggaagttac ttatcttgga cataagataa      4020
     ccgacaaggg tattcttcca gatgactcga aatacgatag cataaagaat tacccgatac      4080
     cacaaaacgc agacgacgtg agaagatacg tagcattctg caattattac agaaagttca      4140
     tcccaaattt tgctttgaaa gcaaaaccgc taaacagtct tttaaagaaa aatacaaaat      4200
     ttgaatggac acaggagtgt caagaagcat tcgaatattt aaaaaacaca ctgattagtc      4260
     cacaggtttt acaatatcct gatttcagta aaccatttat actaaccaca gatgcttcaa      4320
     ctatggcatg tggagctgtt ttagcacagg aacacggcgg caaagatatg ccaatatgct      4380
     tcgcgagtag aacctttacg aaaggggaag cgaataaagc aataatcgaa aaagaactag      4440
     ccgcaataca ttgggctata atgcatttca agcattacct atacggtaaa aagtttaccg      4500
     tcaaaacgga ccatagacca atagtctatc tgttcggtat gaaaaatccg tcatcaaagc      4560
     tgacgagaat gagattagat ttggaagagt tcgattttac agtcgaattt gtaaaaggga      4620
     aacagaacgt tgtagcagac gctctatcgc gaattaaaat cacctcagat gaaataaaat      4680
     ctatcaatgt gattacgaaa agcatgagca agcctgttac ttccgataat gttttaggaa      4740
     acacgtcaga gtctgatcaa ctcaaaatgt tccatgcctt agcatacgac gaagtaaaag      4800
     acttaccaaa actagaatca tcagtaaaaa agaatgaaga cactatcgag ttgataggaa      4860
     aaatcctaaa caaaagaaag tccaaggagc tcttatcagt aagagacatc catctgaaaa      4920
     cagatatagg actgcaggag cctttattag taaaggattt ccaacgaaga aaggaaaaat      4980
     ctgccatagt gcaatttatc aaaaacatag aaaagaagct cgtaatgaaa agcattaccc      5040
     agctagcaat ctctgaaaca gacgagatat tcaaagaggt gcacccaaac gaattaaagc      5100
     aaatcgctaa caatcatttg aaaaatattc agatactaat atatactaaa ccacaaaaga      5160
     ttactaacga aaagacgata aacgacatac tcgacaaagt gcacaacacg ccgacaggag      5220
     gacacattgg acaatataaa atgtacaaga agattagaag agaatattca tggaacaaaa      5280
     tgaaaaagac aatcaaagaa tttttagaca aatgcttaac atgtaagctt aacaaacatc      5340
     aaacaaaaac tgcagaacct tttgtcaaaa cagacacacc taacactccg tttgaagcag      5400
     tatcaattga tacagtaggc ccatttcaaa aaacaaacaa caataaccga tatgcagtaa      5460
     caattcaatg taatttaacc aaacatgtaa cagtcatagc aattcccaac aaagaagcga      5520
     atacggtagc tagagcggta atagaaaaaa ttatgttaat atacggcaca aatataaaga      5580
     aattcagaac cgatatgggt acagaataca agaatgaaat atttaaaaac atatcagaaa      5640
     tcctcaaaat agaacacaaa ttttcaactc catatcaccc acaaactata ggagcattag      5700
     aacgaaatca tagatgcctc aacgaatacc ttagaatatt tacaaacgaa cacaaggacg      5760
     attgggatga ttggatcaat tactattcat tcgcatataa cacaacacca aatttagacc      5820
     atggttatac accatttgag ttagttttcg gaagaaatga aagaataaca ccgaatgtga      5880
     aagatacata ttcaccttta tataattatg atgattattc taaagaattc aaatacagat      5940
     taaaaatagc tcataatagg actagaaaac atatagaaca agtaaaattc aaactattaa      6000
     aagaacaaca aaacattaat caagttaatt tcgaaatagg agatcaaata gccctgacaa      6060
     atgaaaatag aaccaagtta gatccggtat acaaaggacc atataaagta aaagagataa      6120
     atggacctaa catgataatt gaaaacacgg aaggtgtagt acagaaaata cataaaaata      6180
     gagcgattaa attatgacag aataacttca cttcattacg ttattcttcc gaagggtgga      6240
     gg                                                                     6242
//
ID   Gypsy10-I_AP repbase;    DNA;    INV; 4772 BP.
XX
AC   Contig4460;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10AP;
KW   Gypsy10-I_AP; Gypsy10-LTR_AP.
XX
NM   Gypsy10-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4772
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 455-455 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [2095-2523] - Reverse transcriptase
CC   Positions [3702-4181] - Integrase core
CC   'AGAT' target site duplication
CC   LTRs are 98% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..3468
FT                 /product="Gypsy10-I_AP_1p"
FT                 /translation="MTEGNKYSDSDTTTQHRRYLADIEMVVPEFDPVHGTI
FT                 TIEKWIDKVEEYAILYEWDDVAIQHFALTKLTGVARLWRDSLPREDRTWLQ
FT                 WVPLLKANFPSTNEDVLRIKLDAQNFTRKTGQNMIEYFYQKLSKCNRAEMS
FT                 DNEIIQWIVRGIGNDRYRDYLGPLSNYKKPADLLPHLMSANDYIERDKEKN
FT                 TQKLNENSAVKQTRTTGTSDTKKTSLICFRCRVTGHTSKECTKKPTVTCFR
FT                 CSKPGHKSYECRSKPNVNDKTSSSVPQVPSSTNESGKQRSVFQLSNGTTSQ
FT                 NKYFKTAIINGERVRAYIDMGAACVAMRKSEADRLKINYDDTTREEFVGYG
FT                 FGRVSSLGRFQTTLIIDKVSAYVTINVVPDDVQEISLLVGHPFTEQPHVMI
FT                 VSAPNELRVEEVASVEAADQVDKTSVWAKETLVIPKNHVGHITVVTALPDQ
FT                 DLCVEGGMRATRQMVPRCLISTDGEGHAVVPMINLSNGDVTVKKGDTVTRG
FT                 VLFNEVVSKSEKQNREVNQEPVSTEEVVSDLAADQVDEVLTLLNEYKDLVA
FT                 RNLRQVGCTHLTEMKLVLKDNRPVVYRPYRISYKEREQVRGIIDELKEADI
FT                 VEDSESPYASPILLVKKKTGDVRMCVDYRELNKKTVPDKYPLPRIDDQLDR
FT                 LHGNTYFTSLDLFSGYYQVPINDVNTRAQTSFVTPDGHFQFKRMPFGPTNC
FT                 PAIFSRMIAVALGKLLYTVALAYLDDIIIPSKSVEDGLEKLRLVLQSLRDA
FT                 GLTIKLEKCRFFMQKLEYLGFEISKNGIEPGRRKIMAVENFPVPNNVRAVR
FT                 GFIGLASYFRRFVKGFAVIARPLTDLLCKNTRFEWTDERDKAFKMLKKALT
FT                 SRPILSMYEPNAYTEVHTDASQHGVAAVLLQRQAEDGKMHPISYFSRKTTK
FT                 DEAKYHSYELEALAIVSALERFRVYLIGICFVIKTDCNSLKLLADKRDLNP
FT                 RIGRWFMKLSEYQYKIEHLKGDRNLIADALSRSPVEPEQSVEVASLNVFGI
FT                 RITTDWVAALQKDDEEVAGMIAKVEANDPTTKDKYVIENTIDYTE"
FT   CDS           3606..4550
FT                 /product="Gypsy10-I_AP_2p"
FT                 /translation="MREFVTKYINRCVNCMFYKIPKKGELYWHPLDKGSEP
FT                 FQTIHLDHVGPFVMTERDNKYILTIVDGFSKYVVLRAVKDVTAIETVYYMR
FT                 EFICTYGRPERIITDRGTAFTAAIFEKFCHELNINHVKISSKSPRSNGQAE
FT                 IINGIAVKCLAMITENPDNTDWDLKSMEVQWGINNSKHRVTGYTPSDVIYR
FT                 FKIASRIENPLVSEVSKINKDKCITEKEIDPTEVLRKNREKELRKITQRKT
FT                 RPEKFHKGDLVLIKWEAPASGQSRKLEPKYKGPYQIARELRYDRYVVTDVE
FT                 GEQLGQRPFSGVIGFDRLKRVSK"
XX
SQ   Sequence 4772 BP; 1621 A; 791 C; 1137 G; 1223 T; 0 other;
     gttcaggtgt ggggttaata cggaaattgt gcggtaaatc ggtcgtgtgt gtgcgctaga        60
     ctcaattttt tttttgcata catatgcata aaaagcgtta aggttacgcg aacgtgaata       120
     ttattcgagt aatatttatt ttgtaacagt cgtaatagtt tgtactgcgt gtacgaaggc       180
     caggctaaat taggctgggg ctgtccgacg acgtgttgga tatctgttcg ttatcggtga       240
     gtggctcagc ggagcgagtt gttcgggcta tatatacttg attacctgtg gagttgaact       300
     tatcgcgtgc gcgtgatgac tgagggtaat aaatatagtg atagcgacac gacaacacaa       360
     caccggcgat atttggcaga tatagaaatg gtagtgccgg aatttgatcc tgtacacggc       420
     acaattacaa tcgaaaaatg gatcgataaa gtggaagaat atgctatctt atacgagtgg       480
     gacgatgttg cgatacaaca tttcgcatta acaaaactca cgggagtagc ccgactgtgg       540
     agagacagtt taccgagaga agatcgaacg tggttacaat gggtaccact gttaaaagca       600
     aattttccgt cgacaaatga agacgtctta agaataaaat tagatgctca aaattttact       660
     agaaaaacag gtcaaaatat gatagaatat ttttaccaaa aattgtcaaa gtgtaatcga       720
     gcggaaatga gtgataatga aataatacaa tggatagttc gcggaatcgg aaacgatcga       780
     taccgagatt atctaggtcc actatctaat tacaagaaac cggcagattt attgccacat       840
     ttaatgtcag caaatgatta cattgaacgc gataaagaaa aaaatacgca aaaattgaac       900
     gaaaattcgg ctgtaaaaca aacgcgtacg acaggtacga gtgacacaaa aaaaacgtcg       960
     ttaatttgtt ttcggtgtcg tgttaccggt cacacgtcga aggagtgtac aaaaaagccg      1020
     acggtgactt gttttcgatg ttccaaacca gggcataaat cgtatgaatg tcgcagtaaa      1080
     ccgaacgtaa atgacaagac gtcaagttct gtaccacaag ttccttcgtc gactaatgaa      1140
     agcgggaaac agcggtcagt gttccaattg agtaacggaa caacgagtca aaataaatat      1200
     tttaaaactg ccataataaa tggcgaacga gtacgagcat atattgacat gggcgcggca      1260
     tgtgtcgcga tgcggaaatc ggaagctgat agattaaaaa ttaattacga cgacactacg      1320
     cgagaagaat ttgtcggtta tggttttggc cgggtaagct cgttaggccg ttttcagact      1380
     acattaataa tcgacaaagt gagtgcatat gtcacaataa atgtagtgcc ggatgatgtg      1440
     caggaaatct cactcttagt tggtcatcct tttacggagc aaccgcacgt catgatagta      1500
     agtgcgccga acgaactacg cgtggaagaa gtcgcatccg tagaggcggc ggaccaagtt      1560
     gataagacgt cagtatgggc taaagagaca ctagtgattc ccaaaaatca tgtcggacat      1620
     atcactgttg tcacggcgct tccagatcaa gatttatgtg tcgaaggagg gatgcgcgct      1680
     accagacaga tggtgccgcg ttgtttgatt tcaactgacg gagaggggca cgcagtggtg      1740
     ccaatgatca acttatctaa cggagatgtt acggttaaaa aaggcgatac agtaacgaga      1800
     ggggtgctat tcaatgaagt ggtttcgaaa agtgaaaaac aaaatcgtga agtaaaccaa      1860
     gagcctgtat cgaccgaaga agtcgtaagt gatctcgcgg ccgatcaagt cgacgaagta      1920
     ctgacattat taaatgagta taaagacttg gtagcccgaa atctgcgaca agtagggtgt      1980
     actcatctaa ccgaaatgaa gttagtactt aaagacaacc gaccagtagt gtataggccg      2040
     tatcggattt cctataaaga acgagaacaa gtgcgcggta tcatcgacga actgaaagaa      2100
     gcagacatag ttgaggacag tgaatcgccg tacgccagtc ccatattact ggtgaagaag      2160
     aagactggtg acgtccgcat gtgcgtggat tatcgtgaat tgaataagaa gacggtgccg      2220
     gacaaatatc cgttaccaag gattgacgac caactggata ggctgcacgg taacacatat      2280
     tttactagtt tagatctttt tagtggttat tatcaagtac caattaatga tgtaaatacg      2340
     cgtgcacaga cttcttttgt aacgcccgac ggtcatttcc agtttaaacg tatgcctttt      2400
     ggtccaacaa attgtcctgc aattttttcg cgaatgatag ctgtcgcctt aggcaaatta      2460
     ttgtatacgg tcgccctagc ttatttagac gatattatca ttccgagtaa aagtgtggag      2520
     gacggtcttg aaaaattgag gttggtatta cagtctttga gagatgctgg tttaacgata      2580
     aaattagaaa aatgtagatt ttttatgcaa aaactcgaat atttgggttt cgaaataagt      2640
     aaaaatggta tagaaccggg gcgacgaaaa ataatggcag tagaaaattt tcccgttcct      2700
     aataacgtac gagcggtacg cgggtttata gggctagcga gttattttcg tagatttgtg      2760
     aaaggatttg ccgtgattgc tcgaccgctg acagacctgt tgtgtaaaaa tacgcgtttc      2820
     gagtggacgg acgagcgaga taaagcgttt aaaatgttaa agaaagcact tacgagtcga      2880
     cctattctat cgatgtatga accgaatgca tatacggaag tgcacaccga cgcgagtcaa      2940
     catggcgttg cagccgtatt attgcaacga caagcggaag acggtaaaat gcatcctata      3000
     agttatttta gtcgaaaaac aacgaaggac gaagcgaagt accattcgta cgaattagaa      3060
     gcgctggcga tagtgagtgc gttagaacga tttcgcgtgt acttaatagg tatctgtttc      3120
     gtaattaaga ctgattgtaa cagtttaaaa cttttagcag ataaacgaga tctaaatcct      3180
     aggataggta ggtggtttat gaagttatcc gagtatcagt ataagataga acatttgaaa      3240
     ggtgaccgaa atttaattgc tgacgctcta agtaggagcc ctgtagagcc agaacaatcg      3300
     gtggaggtgg cgagtttaaa cgttttcgga ataagaataa caaccgactg ggtggccgcg      3360
     ttgcagaaag atgacgaaga ggtggcagga atgattgcga aggtggaagc gaatgaccct      3420
     accacgaagg ataaatacgt gatagaaaat actatagatt atacagaata acagaaggga      3480
     ggtggaggtt atatttaccg gtcgacctca ggtatgatgt tgttagtact actcatcggg      3540
     aattagtaca cctcggcata gacaagacac tatctaagtt aaaagaacat ttttattttc      3600
     ccaaaatgcg agaattcgta acgaagtaca taaatagatg cgtgaactgt atgttttaca      3660
     aaataccaaa aaaaggagaa ttgtactggc atccattaga taaaggcagt gaaccgtttc      3720
     aaacaataca tctcgaccat gtaggacctt tcgttatgac tgagagagat aataaatata      3780
     tccttacgat agtagacggg tttagtaagt atgtcgtact acgcgccgta aaagacgtaa      3840
     cggctatcga aactgtatat tatatgcgcg agtttatatg cacatatggc aggcccgaac      3900
     gaataattac agataggggt accgcgttta cggcggcgat attcgaaaag ttctgtcatg      3960
     agttaaatat aaatcacgtt aagatatcgt ctaagagtcc gcgtagtaat ggccaagccg      4020
     aaataattaa cgggatagct gtaaagtgtt tagcaatgat aaccgaaaat cccgataaca      4080
     ccgattggga cctaaagtcg atggaagtgc agtggggaat taacaatagt aaacacagag      4140
     tgacaggtta tacgccgtcc gacgtgatat atcggtttaa aattgccagt cgtatcgaaa      4200
     acccgttagt gagtgaagtg tccaaaataa ataaagataa atgtataaca gaaaaagaaa      4260
     ttgacccgac cgaggttcta cggaaaaatc gagaaaagga attacgtaaa ataacacaac      4320
     gaaagacaag acccgaaaag tttcataagg gagatttggt attaattaag tgggaggcac      4380
     cggcctcagg acagagtaga aagttagagc ctaaatataa aggaccgtat caaatagctc      4440
     gggaactgag atacgaccga tacgtcgtaa ctgatgtaga aggggaacag ttaggacaaa      4500
     gaccatttag tggggtaata ggatttgacc gcctaaagcg agtaagtaaa taaaaaaaaa      4560
     aaatgtgtaa tttaatgttt agtcgtattt ttttaaaaca aaaatgtttt tatgaaatat      4620
     taattaaaaa aaaaaaaaaa aatgtaattt aatgtttagt cgtattttca aaacaaaaat      4680
     gttattatta attattattt aaaaaaaaaa aaaaaactgt attattattc atatatttga      4740
     cgggacgcca aaaatttgtc aggaaggccg ac                                    4772
//
ID   Gypsy10-I_Dpse repbase;    DNA;    INV; 6808 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10_Dpse;
KW   Gypsy10-LTR_Dpse; Gypsy10-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6808
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1076-1076 (2009).
XX
RN   [2]
RP   1-6808
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           628..1833
FT                 /product="Gypsy10-I_Dpse_1p"
FT                 /translation="MINSQARTDLTADLVKQLIALQISQVQEQIVNLKQQI
FT                 ETKSDQVSDYQAETIDETIRDDTTLKVIESLPIFNGGLNQYVGWREAAETA
FT                 VKLYKKGSKQYYIALTILRNKITGPAHDALTNHGTVLNFDAILSRLDFVYS
FT                 DKRPIYIIEQELSVLRQGNLSIIDFYNEVNKKMTLLINKTIMTHGKDSEIT
FT                 KESNKKIRDNALRIFVTGLNGGIAEILFSLNPPDLPNALAKVQELQSNNIR
FT                 AQFAYQFSGPRNSGNNNFNTLRFNQRQSRTNSSPFDQRRDLQRNNMSWGQP
FT                 YFLGNKQQNQAPEPMEVDESIQIRNRQNSNQFRGNNNNRNYRENTNGYYRR
FT                 NNNNYSQAQHFRANVVPNNQSNDNQAQKRKPNEMSEQPANKAMRINNIEED
FT                 HFLDQPPK"
FT   CDS           1803..5357
FT                 /product="Gypsy10-I_Dpse_2p"
FT                 /translation="GGSFFRSAPEVGLPYLKRVDKKINRELKVLIDTGATS
FT                 CYIKKGIYDNKKELPIYKKVATVNGFSIIKYFHNITIFNTKQVFYEIDGME
FT                 ADLLIGFNLLKKIGAVIDTGKGTLSYKDNEEKLIYDEVLSLNKLTFIEGKT
FT                 ILPLKEYIIKKYFEEEKEMKSESVNVEGSLYSLGSKNPEHADEELSVNSLG
FT                 FKYPEPAVVELSDIQSFNSLGLKYPEHAVVELSDIKSSNSLGLKNPEHAVV
FT                 ELSDNEQFKSLGCKNPERAVVEISDIQNYANSELKKMKLYNTITYKEDNLE
FT                 NLREKMVSIIEEDHANINLQLPFRTDIKGEINTEHDRPVYGKQYPYAYSVN
FT                 DFVNNEISKMLDEGIIRPSKSPYNSPVIVVPKKGVNEDGTPKHRLVIDFKK
FT                 LNENTIPDRYPMQDPSVILANLGKAKYFSAIDLESGFYQILMRESDIEKTS
FT                 FSINNGKYEFLRMPMGLTNAPRIFQRAMDDILREQVGKTCHVYMDDIIIFS
FT                 KTIEQHYKDLIHIIQILQNANMKISLEKSKFFQLETKFLGYIVSQNIIKTD
FT                 PDKISTIQNYPIPKNIRELRSFLGLTGYYRKFVRNYATIAKPLTKYLSGVN
FT                 GKVSRRASKKTLIQLDEPAIGAFNNLKDSLIAHIELVQPDYNKKFTLTTDA
FT                 SDIAIGAVLSQDGNPITFISKTLSKTEQLYATNKKELLAIVWALKNLRNYL
FT                 YGVSGIEIHTDHQPLSFAMSQKNPNVEMKRWYYFIESFTPKIIYKPGSTNV
FT                 VADALSRIKINHMTDSDVDQTESESDINTQHSAESSFENVIQETSKPLNQF
FT                 KQQLLLAQGRFTVHELVRVYENTRHIIEFDTVDNLLIILKEFIQPHLTTGI
FT                 HCTLEDLYLIQNKLKENFINKFLFTRKFLQDVVNSEDKAIIIEETHCRAHR
FT                 GLDENYKQITKLYYWPNLHKKLKEYIKNCEICNKNKYQRHPVKIPIGEAPI
FT                 PAKEGDQLHLDIYYAQNLTFITCIDSYSKYLVVKEIQSKLNIENKVMEILQ
FT                 HFPLATSLMTDNEPSFTSAQFRSFIQRSNLTIYYADPRHSTSNGQVERVHS
FT                 TLTEIARCIKDELNLTDYSEIIIRAALKYNLTIHSTTNQMPYDILYNKIEH
FT                 KHNPILLKEAQTKMLKIHNKDRREKDYKIGEVVYEKKFGERNKLQSRYKKQ
FT                 VVKENRPNKIIINNRNRIIHKDNIKY"
FT   CDS           5377..6795
FT                 /product="Gypsy10-I_Dpse_3p"
FT                 /translation="MYANILILTFVILTTAEVIDYTHSDYLLLKDDRDVYT
FT                 YETYAELFHITNLSFYREIIDKESKYVNKSINSDDEWEISMDLSLLKLMIS
FT                 ELVPKRKERGINELGTIWKWIAGSPDHDDFLKIQNKVNELTENNNKQFVIN
FT                 SKFFKEIELLSNSLKNVIFNEETILRKHRLKLITFDLLNLVDTITLLKVNI
FT                 FNTKILNKNEIEDIYKHEKHNVELSDLLDIATVKIIRNADLIIIYIKYPQI
FT                 KDICKFYHARAISQNDGMLVISEKVCECKEKYYLMNNFKSETFNNYAQINL
FT                 KSTCFTNLLNGFKANCTKKREKNKEIDIIQDGAILVSGKNIVDNTTLLGSY
FT                 LLIFNNTIVINNITHINDKGKILKYISHHRYSDFELVDYIQSNDKQFSFDN
FT                 VNILNPLITLGNTALPLTTLFLIILILLMLFYFGYKLTKFVLIKSIRIPSE
FT                 EIVESNIQILSEEIRALSELQNVSGRNI"
XX
SQ   Sequence 6808 BP; 2828 A; 1111 C; 1121 G; 1748 T; 0 other;
     ggcgcccaac gtggggcgac gttgtataaa aaacaccgaa tgataaaagt gttgcgtcgt        60
     gccgaaaccc gaaggacaat taattaatgg aataaatcct tcaaaattaa aaacgcggag       120
     tgactgtgtg atatagataa aaaaaagtga gataaaaagg aaacaaaccg gagcttaggg       180
     tgtgcaaaaa caaatacaaa tacaaataca aatacaaata caaatacaaa tacaaataca       240
     aatacaaaaa caaatacaaa tacatataca aatacaaata ccaggcaatt cgtaaataca       300
     aaaacaacca aagaaaccca aagtttaaaa agaaaaaaaa caaaaccaac aaaaccgaca       360
     aaaccaaaat acaaagaaag tgaaacgatc agcgaagcca aagaaggaag acccccagaa       420
     gacccagctg agcaaagaaa tttaagaagg aagacccgtt cgaagatctg ccaaactaag       480
     aaggacgacc cctaccggat atttcgtgag caagagttgt attaataaat atataagttc       540
     aattaggata tataagatta taaaaaaact aacatataag aaaaattaaa agtggatcag       600
     ctaactttag attttgaaaa actaaaaatg attaactctc aagcaaggac cgatctcaca       660
     gcagatctgg tcaaacaatt gatagcactt caaatttcac aagttcaaga gcaaattgta       720
     aatttaaaac aacaaataga aactaaatcc gatcaggtat cggattatca ggcagaaaca       780
     atagacgaga caataagaga cgacaccaca ttaaaggtaa tagaatccct accaattttc       840
     aatggtggat taaaccaata tgtaggatgg agggaagctg cagaaactgc agtgaagtta       900
     tataagaaag gaagtaagca atattatatt gcattaacaa ttttgagaaa caaaataaca       960
     ggaccagcac atgacgcact gaccaaccac gggacagttc taaattttga tgccatactt      1020
     tcacggcttg actttgttta cagtgacaag agacctattt acataataga acaggagtta      1080
     agcgttctcc gacaagggaa cctttcaatt atagatttct ataacgaggt taacaagaaa      1140
     atgaccttgt taataaataa gacaataatg actcacggaa aggacagtga aatcaccaaa      1200
     gaatcaaata aaaaaattag agacaatgcc ttacgcattt ttgtcactgg cctaaacggc      1260
     ggcattgctg aaatcctatt ttcattgaat cccccagatt taccgaatgc cttagcaaag      1320
     gtacaggaat tgcaatctaa taacattcgg gcccaatttg cctaccaatt cagcggtccc      1380
     agaaattcag ggaataataa ttttaatacc ttaagattca accagcgaca atctaggact      1440
     aacagttcac cattcgacca aagaagggat ttgcagagga ataacatgtc ttggggacaa      1500
     ccctatttct tgggtaataa acaacaaaat caggccccag aaccaatgga ggtagacgaa      1560
     tcgatacaaa tccggaaccg acagaacagc aatcaattca ggggaaataa taacaataga      1620
     aattatcggg agaatactaa cggttattat aggagaaata ataacaatta tagccaagcc      1680
     cagcatttta gggcaaacgt agtaccgaat aatcagtcta acgacaatca agcgcagaaa      1740
     cgaaagccaa acgaaatgtc ggaacaaccg gctaataaag caatgaggat aaataacatt      1800
     gaggaggatc attttttaga tcagcccccg aagtaggtct gccctaccta aaaagagtag      1860
     acaaaaaaat aaacagagaa ctaaaagttt tgatagatac gggagcaact tcctgttata      1920
     taaaaaaagg aatttacgac aataaaaaag aattaccaat ttataagaaa gtcgctacag      1980
     tgaatgggtt ttcaataatt aaatatttcc ataatataac aattttcaac acaaagcaag      2040
     tgttttatga aatagatgga atggaggcag atttactaat aggatttaac ctattaaaga      2100
     aaatcggagc ggttattgat acaggaaagg ggactttaag ttataaagac aatgaggaga      2160
     aactaatata tgacgaggtc ctttctttaa acaaattaac ctttatagaa ggaaaaacca      2220
     tccttccgtt gaaggaatat ataataaaaa aatattttga agaagaaaaa gaaatgaaaa      2280
     gtgaatcagt aaacgtagaa ggaagtttat atagcttggg atcaaaaaat cctgagcacg      2340
     ccgacgaaga attatccgtc aatagtttgg gattcaaata tcctgaaccc gccgtcgttg      2400
     aattatccga catccaaagt tttaatagtt tgggattaaa atatcctgag cacgccgtcg      2460
     ttgaattatc cgacattaaa agttcgaata gtttgggatt aaagaatcct gaacacgccg      2520
     tcgttgaatt atccgacaat gaacaattta aaagtttggg atgcaaaaat cctgaacgcg      2580
     ccgtcgtaga aatatccgac attcaaaatt atgcaaattc tgaattgaaa aaaatgaaat      2640
     tgtataacac aataacctac aaagaggaca atttagaaaa tctcagagag aaaatggtat      2700
     ctatcatcga agaagaccat gccaatataa atttacagtt accgttcaga acggatataa      2760
     aaggagagat taacactgaa cacgatagac cggtatatgg caagcagtat ccatacgctt      2820
     attcggttaa cgatttcgtt aataacgaaa taagtaaaat gttagatgaa ggtataatca      2880
     gacctagtaa aagcccatat aattcaccgg taatagtagt accaaagaag ggagtaaatg      2940
     aggacggaac tcctaagcat agattagtaa tagactttaa gaaacttaat gaaaacacca      3000
     taccggatag ataccctatg caagatcctt cagtaatcct tgccaattta ggtaaagcga      3060
     aatatttctc ggccattgat ttagagtcag gtttctatca gattttaatg agggaatcag      3120
     atattgaaaa aacatctttt tccataaata acggcaaata tgaatttcta agaatgccta      3180
     tgggattgac gaacgctccc agaattttcc aaagggcaat ggacgatata cttagagaac      3240
     aagttgggaa aacttgtcac gtttatatgg acgatataat aatattttca aaaactatag      3300
     aacaacatta taaagatcta attcatataa ttcagatatt gcaaaacgct aacatgaaaa      3360
     tttcactaga aaagtctaaa ttctttcaat tggaaaccaa atttctggga tacattgttt      3420
     cccaaaatat cattaaaaca gatccagaca aaatctccac aatacaaaac tatccaattc      3480
     ctaaaaatat cagagagcta cgtagcttct taggactaac agggtattac agaaaatttg      3540
     tccgaaatta tgccacaatt gccaaacctt taacaaaata tctgagcgga gtaaatggga      3600
     aagtttcacg aagggcatcc aagaaaacat taatacagct ggatgaacca gcaattggag      3660
     catttaataa tttaaaggac agtttaatag cacatattga attagtacaa ccagattaca      3720
     ataaaaaatt cacattaacc acagatgcat cggacatagc aataggtgca gttttgtcgc      3780
     aagatgggaa tcccataaca tttatttcta aaactttaag taaaaccgag caattatatg      3840
     ctactaataa aaaagaatta ttagctattg tatgggcatt aaaaaatttg cgaaattatt      3900
     tatacggagt gagtggaatt gaaatacata cagatcacca acctttgtcc tttgcaatgt      3960
     cgcaaaaaaa tccaaatgtt gaaatgaaac gttggtatta cttcatagaa agtttcacac      4020
     caaaaatcat ttataagcca ggctcaacta acgtagtagc ggacgcgtta tctcggatta      4080
     aaataaatca tatgacagat agtgatgtcg accaaacaga atcagaatca gacataaata      4140
     ctcagcattc agcagagagt agtttcgaaa acgtcattca agagactagc aagcctctaa      4200
     accaatttaa acagcagcta ctattagcgc aagggagatt cacagttcat gagttagtaa      4260
     gagtttatga aaatacccga catattattg aatttgatac ggttgacaat ctgctaatca      4320
     ttttaaaaga atttattcag cctcacttaa ccacaggaat acactgcact ttagaagatt      4380
     tataccttat ccaaaataag ctaaaggaaa acttcataaa taaatttctc ttcacgagaa      4440
     agttccttca agatgtagta aattcagaag ataaagctat aattatagaa gaaacacatt      4500
     gcagagccca tagaggacta gacgaaaatt acaaacaaat aactaagctg tattattggc      4560
     caaacctgca caaaaaatta aaagaatata taaaaaattg tgagatctgt aacaaaaaca      4620
     aatatcagag acaccctgta aaaattccaa ttggggaagc tcccattcca gcaaaagaag      4680
     gagatcaatt acacttagac atatactatg cccaaaacct aacattcata acttgtatag      4740
     attcttattc caaatacttg gtggtcaagg aaattcaaag taaactaaac attgaaaata      4800
     aggtaatgga aattttacaa cactttccgc tagcaacatc attaatgact gacaacgaac      4860
     caagctttac ttcagcacaa tttagatcat tcatacaaag aagtaactta actatttatt      4920
     atgctgatcc cagacacagc acctcaaatg gtcaggtaga aagggtacat tccacactaa      4980
     cagaaatagc gcggtgcatc aaggatgaac taaatctaac agattattca gaaataataa      5040
     taagggcggc actgaaatat aacctgacga tacattcaac gaccaatcaa atgccatatg      5100
     acatattgta taacaaaata gaacacaaac ataatccaat attacttaag gaagctcaga      5160
     ccaaaatgct taagatacat aacaaagata gaagagaaaa agattataaa ataggagaag      5220
     tagtctatga aaagaaattc ggggaaagaa ataaacttca atcccgatac aaaaagcagg      5280
     tagttaagga aaatcgaccg aataaaatta taatcaacaa tagaaacaga attatacata      5340
     aagataacat caaatattaa atattttttc cagaaaatgt atgcgaatat actaatactg      5400
     acttttgtta tattgacgac tgcggaagta attgactata cgcatagtga ctatctattg      5460
     ctcaaagacg acagagacgt ttacacttat gaaacatacg ctgaactttt ccatattact      5520
     aatttgagtt tttatagaga gataattgat aaagaatcca aatatgtcaa caaatcaatt      5580
     aattcagacg atgagtggga aatatcaatg gacttaagtc tattaaaatt aatgatttca      5640
     gaattagttc caaaacggaa agaaagggga ataaatgaat taggtaccat ttggaaatgg      5700
     atagcaggca gccctgatca tgacgacttt ttgaaaatac aaaataaagt aaatgaatta      5760
     actgaaaata ataataaaca atttgtaata aattccaaat ttttcaaaga aattgaattg      5820
     ctatcaaatt cattaaagaa tgtcatcttc aatgaagaaa cgatactgag aaagcatcgt      5880
     ttaaaattaa taacttttga cctactaaat ttagttgata ccataaccct cttaaaagta      5940
     aacattttca atacaaaaat tttaaataaa aacgaaatag aggacattta taagcatgaa      6000
     aaacataatg ttgaactgtc tgatctgttg gacattgcaa cggttaaaat aattcgaaat      6060
     gcagatttaa taatcattta cataaaatat cctcaaatta aagatatttg caagttttac      6120
     catgcaagag ccatctcaca aaatgatgga atgttagtta taagtgaaaa agtttgtgaa      6180
     tgtaaggaga aatactattt aatgaataat tttaaaagtg aaacttttaa caattacgca      6240
     caaataaatt taaagagtac ctgtttcacc aatttactta atggctttaa agccaactgc      6300
     actaaaaaaa gggaaaaaaa caaagaaata gacatcattc aggatggtgc catattagtt      6360
     tcaggcaaaa atatcgtaga caatactact ttgttaggat cgtatctcct tatattcaac      6420
     aacacaattg taataaataa tataacccac ataaatgata agggtaaaat tctaaaatat      6480
     atatcgcatc atagatatag cgattttgaa ttagtcgatt atatacaatc gaatgataag      6540
     caattttctt ttgataatgt taatatttta aatcccctta taacattagg taatacggcc      6600
     ttaccattaa caacattatt tttaatcatt ttgatattgt taatgttatt ttacttcggc      6660
     tataaattaa ccaaatttgt acttattaaa tcaataagaa taccgtcaga ggaaatagtg      6720
     gaaagcaaca ttcaaatact gtcagaagaa attagagctc tatcagaact tcaaaatgta      6780
     tcgggacgaa acatttaaga atgggggg                                         6808
//
ID   Gypsy10-I_Dya repbase;    DNA;    INV; 5824 BP.
XX
AC   .
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10_Dya;
KW   Gypsy10-LTR_Dya; Gypsy10-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5824
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1077-1077 (2009).
XX
RN   [2]
RP   1-5824
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-OCT-2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           983..2479
FT                 /product="Gypsy10-I_Dya_1p"
FT                 /translation="MMGLDRSPERGADSSPKVVCPLCTADINPAEVFITSC
FT                 QHEFHKRCIEAYWKKSAQCPVCKVASRPEIPKPKEVTERQTRSGSRKRQPV
FT                 DTVGQQVSGNIASTSGQSTQANNIGASNSNSLTDNAMILLAMEQRLLATLS
FT                 EKMTDLIQNSITXTITRALASTSGGNDNSQREHSSRRSLSNGDRVETRNET
FT                 GSNSRQVLSAPGSPASQRSTTSDLVNRPDKVVHILNGWKIKFSGKGVYVDN
FT                 FIYRVNTLTRETLDNNVDLLCKHASVLFEGKANEFYWRYHKAHGDIQWNSF
FT                 CTALRLQFRDSRDDCDIEELIRNSKQKQNESFDSFYDTISGLVDQLEHPWT
FT                 TSKLIRVLRNNLRPEIRHEILNIDIKTVSDLRQICRRRETFLADVKRVSGY
FT                 VRSTPFKREVAEFSQEYDTQLESEPENEADVEAFSLLCWNCRKEGHRYQDC
FT                 VSERRIFCYGCGAANTYKPSCNKCSKNSKAGMSKSQFKQKTSIASRSQSTM
FT                 TEE"
FT   CDS           2386..5745
FT                 /product="Gypsy10-I_Dya_2p"
FT                 /translation="VFKKLQSRHVEVAIQTEDFDCLPEPIHNDRRVRDAAN
FT                 VAQPPIPDEQQLPASSLLHSKIQTLKKIKHEENYLQNVGKRKARNSSRIKA
FT                 FWQNVKNCRIGVNYIKSLPEGPKDPRPFLPIRLFNRTVYGLLDSGASASCV
FT                 GGNLAREVEAAGNYKAINSSATTADGRSQQIRGHIQTEVEYGDQKKVLKIY
FT                 IVPSLKQDLYLGIDFWKLYDLLPRRLIISELDSTEVDFKVKVDQHKLSEMD
FT                 KARLTNVINCFPSFSQDGLGKTNLISHSIDVGMAKPIKQRHFPVSPAVEKA
FT                 MYSEIDRMLQLGVIEESDSSWSSPIVMVTKPGKVRICLDSRKVNSFTEKDA
FT                 YPLPQISGILSRLPKAEYITSLDLKDAYWQVPLEKTSRDKTAFTVPGRPLY
FT                 QFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLVVSSSFERHLE
FT                 VLREVALQIRRAGLTINIGKSHFCMLRVRYLGHIIGDGGIRTDPEKVAAIR
FT                 NFPLPKTLRSLRSFMGLCGWYRKFVPNFASLAAPLTDLMTTKRRFSLTEAA
FT                 VESFEKLKQCLSEAPVLCSPDFSKPFAIHCDASKTGVGAVLVQVSEEGDER
FT                 PIAFISKKLNKAQQNYTVTEQECLAAIVALKSFRAYVEGHRFKIITDHASL
FT                 KWLMSNHDLNSRXARWALALQRYDFAIEHRKGSMNVVPDSLSRVNEDAVAA
FT                 IDLREGLLVDLNSDHFKSAEYTELVQKVSANQKNFPDLRTDSGYIYXKAEH
FT                 LTGEQVHDEYAWKLWVPKELVSEILSRAHDNSLSAHGGIHKTIERVRRYYF
FT                 WPGLVADVKAYINACEVCKTTKAPNYVLRPPLGKAPESQRFFQRLFIDFLG
FT                 PYPRSRSGNIGVFIVLDHFSKYVFLKPVKKIDSGVVIKYLEGELFMSYGTP
FT                 ETIVSDNGSQFRSHAFQKLMQXYGITHTFTAVHSPQANASERVNRSVIAAI
FT                 RAYVRPDQKDWDEYLNKISCALRSSVHSSLGTSPYYMVFGQHMVTSASTYS
FT                 LLRKLNLLDDRSLKFNRSDSFDIVREKACKKMIEKHSENEKKYNLRSRVVS
FT                 YTEGQEVFRRNFKQSCFQTGYNAKFGPSFVKARVRRRLGSAYYVLEDLQGR
FT                 LIGTYHAKDIRQ"
XX
SQ   Sequence 5824 BP; 1767 A; 1099 C; 1289 G; 1651 T; 18 other;
     gttataattc attattatta ataagaaaag tggcgcccaa acgtgtggag ccttagtaga        60
     aaaataattt tttttattaa gactcgcgaa taaataaatt tattttcttt aacttcagtt       120
     atcaagaatt ctcggattac agttaagtga atattagtat tcctagctgt ccagacttaa       180
     atcgggtgkt gcctagaaaa gattttttmt taggamtccc agataaacga agtctttctt       240
     tcttttatct tttatctgaa taattcttgg aaaacawttg aggtgaatat cagtattccc       300
     aactgtccag tsttacaaag aagctaaaga ttcttcctaa gatgtaggtg agattacaag       360
     gtgactattt aaaatgagga aaacwgaggt ggtcatcgaa ggctcatctt ctgtcccaga       420
     ttatgkcact aagtcattga actaagtcta ckcwaaaact caackctacg gaaaatactg       480
     gcaatttctt ccgagtcgtg ccatagccag agagagttaa tgaaaacwtt cctttattct       540
     ttattttcta gaagttttat attttttttg atggtattct ggaatacatg cgtttctgtt       600
     tttgaaccaa tcgctgtccg aattcgaaat cckgaaatat atcttccctc cttgaatagg       660
     tcaaacctta gcaaaagcct attactttcc aatctttcaa tttctgagaa tattaattat       720
     cattaagaaa acgatacctt gcgatacgtg cgacatctag tattgagttc ggtaaataca       780
     tatacatatt tttgattact ttatcacatt ttacttttcg aatttttkgg ttgaattatc       840
     gaaacatttt ctgtctttaa ttacaaaaca aagcatcaat ttctaaaaga acaatttcga       900
     ttgtagttgg ttaaccgttg tcggaacgtg aatattttta cttttttttc gcactcaaac       960
     cagattttta tatcttgtgg gaatgatggg gttagaccga tctcctgaaa gaggggctga      1020
     ctcaagccca aaggttgttt gtccgttatg tacagcagat ataaatcctg ctgaggtttt      1080
     tataaccagt tgtcaacacg agtttcataa gcggtgtata gaagcttatt ggaagaagag      1140
     cgcacaatgt cctgtgtgta aagtagctag tagaccagag atcccgaagc ctaaagaagt      1200
     aactgagaga caaactcgaa gtgggtcgag aaaacgacag cccgtggata cagttggtca      1260
     gcaagtctca ggtaatatag cttcgacctc gggacaaagt acgcaagcta ataacattgg      1320
     ggccagcaat tcgaatagtt taacagataa tgctatgata ttactagcta tggaacaaag      1380
     gttattagct acgctttcgg agaagatgac tgatttaatt cagaattcca taaccgawac      1440
     tataaccagg gcgttagcaa gcaccagtgg tggtaatgac aattctcaga gggaacattc      1500
     ttcacgtcga tcgcttagca atggagatag ggtcgaaaca agaaatgaaa ccggtagcaa      1560
     ttcaaggcaa gtcctctcgg ctccgggctc tcccgcttca cagagaagca ctacgtccga      1620
     tttggtaaac cgaccagata aggttgtaca tatcctcaac ggttggaaga taaaattttc      1680
     tggaaaagga gtgtatgttg ataattttat ttatagagta aatactctaa cacgagagac      1740
     gttagacaat aatgtcgatc tgctttgcaa acacgccagc gtactttttg aaggaaaagc      1800
     caatgagttt tattggcgtt atcataaagc gcacggcgat attcagtgga attctttctg      1860
     tacagctttg cgtctccagt tccgcgatag cagagacgat tgcgatatcg aagaattaat      1920
     caggaattct aaacaaaagc aaaacgaatc ttttgatagt ttttatgata caatatcagg      1980
     tttagtcgat cagctggagc atccttggac tacgagtaaa ttaattcgag ttctcagaaa      2040
     caatttgcgt ccagaaataa gacatgagat cttaaacatt gatattaaga cggtttcaga      2100
     tcttagacag atttgtcgca ggcgcgaaac cttcttggcc gatgttaagc gggttagcgg      2160
     ctacgtgcga agcactccgt ttaaacgtga agtggctgaa tttagtcagg agtatgatac      2220
     gcagttagaa tcagaacctg aaaatgaggc tgatgtcgaa gcgttctcct tattatgctg      2280
     gaattgccgc aaggaaggac accgatatca ggattgcgta tcggagagaa gaatattctg      2340
     ttacggttgc ggagctgcaa acacttacaa gccaagttgt aataagtgtt caaaaaactc      2400
     caaagccggc atgtcgaagt cgcaattcaa acagaagact tcgattgcct cccggagcca      2460
     atccacaatg accgaagagt aagagatgca gcaaatgttg cacaacctcc aatccctgac      2520
     gaacaacaac tacctgctag ttctttgcta catagcaaaa tccaaacact aaagaaaatt      2580
     aaacatgaag agaattattt acaaaatgtt gggaaacgaa aggctcgaaa ttctagtcga      2640
     attaaagcat tctggcaaaa tgtcaagaac tgtagaattg gagtcaatta tataaagtcg      2700
     ctacctgaag gaccaaaaga tcctcgtccg tttttgccaa ttcggttgtt taatcgtacg      2760
     gtttacggtc tgttagactc tggcgcatcg gcaagttgtg taggaggtaa cttagcccgt      2820
     gaagtagaag ctgcaggaaa ctataaggcc attaatagta gtgctacaac ggcagacggc      2880
     cgatcacagc agatacgagg acatattcaa acagaggtag aatacggcga ccagaagaag      2940
     gttttaaaaa tttacatcgt accgtcgctt aaacaagatc tatatttagg gatagatttt      3000
     tggaagcttt acgatttact tcccagaaga cttatcatat ctgagctaga ttcaactgaa      3060
     gttgatttca aagttaaagt tgaccaacat aagctatccg agatggataa ggcgaggcta      3120
     acgaatgtga tcaattgttt tccgtcattt agtcaagatg gtcttggtaa gaccaacctt      3180
     atatcgcact ctattgatgt aggtatggca aagccaataa aacaacgcca tttccctgtt      3240
     tcaccagccg tagaaaaggc aatgtattcc gagattgaca ggatgctaca actaggagtg      3300
     atagaagagt ctgacagttc ttggtcatct ccaatcgtta tggtaacgaa acctggaaag      3360
     gttagaattt gtctagacag tcgtaaggtg aatagcttca ccgaaaagga tgcatatcct      3420
     ctgcctcaaa ttagtggcat tttgagtagg ttgccgaagg ccgagtacat aactagcctt      3480
     gatctaaagg acgcttattg gcaagtgcct ttggaaaaaa cttcgcgtga caagacggcg      3540
     ttcaccgttc ctggtagacc cctctatcag tttaaagtta tgccgttcgg gctatgcaat      3600
     gccacaagta cgatgtctcg tttgatggac aaagtggtgc cagctcatct taggaacgag      3660
     gtttttattt acctagatga tctgctggtg gtttcatcaa gttttgagag gcacctcgaa      3720
     gtgctaagag aggttgcgct acagataaga cgtgcaggtt tgacgatcaa tattggcaaa      3780
     agtcacttct gcatgttgag agtgcgttac ctaggtcata taatcggaga tggaggaatc      3840
     cgtaccgatc cagaaaaagt agccgcaatt aggaattttc ctttgcctaa aacgttgcgc      3900
     agtctgcgaa gtttcatggg tttatgtggc tggtatcgca agttcgttcc taattttgcg      3960
     tctcttgctg ctcctttaac tgatctgatg accacgaaaa gaagattcag tttgactgaa      4020
     gcagcagtag aatcttttga gaagctaaag caatgtctta gcgaggctcc tgttttatgc      4080
     agtcctgatt tttcgaaacc attcgcaata cattgcgatg cgagcaagac cggagttgga      4140
     gccgtgttag tccaagtttc ggaagaagga gatgagcgtc ctattgcctt catttcaaaa      4200
     aagttaaata aggcgcaaca aaattataca gtcacagagc aagaatgtct cgccgcgatc      4260
     gtggctctta aaagttttag ggcgtacgtg gaaggacata ggttcaagat cataactgat      4320
     catgcgtcac taaaatggtt gatgtctaac catgacctta attcgcgcmt agctcgatgg      4380
     gctttggcct tgcaaagata tgatttcgcg attgagcatc gcaaaggttc gatgaacgta      4440
     gttcccgact ccttgtctcg ggtgaacgaa gacgcggtag ctgcaattga cctgcgggag      4500
     ggacttctcg tggatctaaa ttctgaccac tttaaatcag cggaatacac cgagttagtg      4560
     cagaaagtga gcgcaaatca gaagaatttt cctgatctta ggaccgatag cggttacatt      4620
     tatckgaagg ctgagcattt gacaggagag caggtgcacg acgaatatgc ctggaagcta      4680
     tgggtaccta aggaattggt ctcwgaaata ctgtctcgtg ctcatgataa ttcgttgtct      4740
     gctcatggtg ggatacacaa gaccattgag agagttagac gttattattt ctggcctgga      4800
     cttgtagcag acgttaaggc ctatataaat gcgtgtgagg tgtgcaaaac cacaaaagca      4860
     cctaattacg ttttgcgacc accgttagga aaagcgcctg agagtcaaag gtttttccaa      4920
     cgcttattta tagactttct tggaccttat ccaaggtcta gaagtgggaa cattggagtt      4980
     tttatcgtcc ttgaccattt ctccaaatat gtctttctta aaccagtaaa gaagatagat      5040
     tcaggtgttg tcataaaata tcttgaagga gaattattta tgtcgtatgg cactcccgaa      5100
     acgatagtgt cagataatgg atctcaattc cgttcacacg cttttcaaaa gttaatgcag      5160
     cwgtatggta ttactcatac atttactgct gtacattcgc cacaggcgaa tgcctccgag      5220
     cgcgtgaacc gatcagttat tgctgcaatt agagcatatg tgagacccga tcaaaaagac      5280
     tgggacgaat acttaaacaa gattagttgt gcgttgagat cgtccgtaca ttcaagccta      5340
     ggaacttctc cttattatat ggttttcggg caacacatgg ttacctctgc ttctacgtac      5400
     tctttgttga ggaagctcaa cctattggat gatcgatctt tgaagttcaa tcggtcagac      5460
     tcgtttgata tagtacggga gaaagcatgt aagaagatga ttgaaaaaca ctccgagaat      5520
     gaaaagaagt acaatcttcg gtctcgagtt gtttcttata cggaagggca agaagtattc      5580
     cgaagaaatt ttaagcaaag ctgtttccaa acaggataca acgctaaatt tggtccttct      5640
     tttgtgaaag caagggttcg cagaaggcta gggagcgcct actacgtgct agaggattta      5700
     cagggaagac taataggtac ataccatgcg aaagatattc ggcaatgacg tgtcttcagt      5760
     cgtgtcatcc gtctagggta ccaatcgaac atatacccta gccagatgtt accggggggc      5820
     tttt                                                                   5824
//
ID   GYPSY10-LTR_AG repbase;    DNA;    INV; 982 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY10-LTR_AG is an LTR of retrotransposon GYPSY10_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY10_AG; GYPSY10-I_AG; GYPSY10-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-982
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY10_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 163-163 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY10-LTR is a long terminal repeat of GYPSY10_AG
CC   (its internal portion is deposited as GYPSY10-I_AG).
XX
SQ   Sequence 982 BP; 333 A; 255 C; 172 G; 222 T; 0 other;
     tgtagcagat ttactgctaa cagttcaacc aacctataga gccacctaag cagttataca        60
     atcgttacta accaaaaacc ggatgacata acattaagag ttgaaccaac tcaaaaagcc       120
     acctcaacat aatcgttgct aaccaaaacc atccaactaa aaacacattc aaattaacca       180
     gcaatcaaat caggtgagac agaaaaccta ccatgcaata aatgcttagc acacacaaac       240
     cgtaggacag gaagcgcgaa ccgacaactt ataaaaacat aacgcgacgg taacatgaaa       300
     cgcgcctcgc aactcagaac ggctgcaaaa cgattgcgca acaataacac caagtgacaa       360
     acaaacaacc ggacattgac tttatatttt gatgaacaaa cctcaaaaca ggaaggttag       420
     caaccacata atgaaagtag gtcaatatta gtcgtaaaca taaaataagt gtaaaaagac       480
     attgtgtcat cactgtttaa gaatgcgtta taaataaagc ttattcgaaa cagtgagaca       540
     gttcactagt ttcagacacg tagatcactc gtgtttagtg tttctcccca ttagcagaag       600
     ccgccgaagg ctctgcccaa ttggtaacca cgtttggtta tcagctgttc agtcggttga       660
     ccgatcagca ataccccttc tacggaagaa gtgcaagttt gcaccttaat cggttaatac       720
     tcccgcagcg ttttaacgcc gcctggaatc cgatccatcg cgcaagtaaa gttccgtagt       780
     tccacccgtc cgttgcataa gtgtaacttg accatctctt cctaacgaag tgaacgaatg       840
     atacaattca ttcgcaatta aaccaactac ggtacgttct cgcctcgata ccccgcctcg       900
     ttctgcactc ttcctccaca ttccgcgcat cggcttaccg cacacggttc tggtaagcaa       960
     agtgcgcgcc gaacctacca ca                                                982
//
ID   Gypsy10-LTR_AP repbase;    DNA;    INV; 329 BP.
XX
AC   Contig4460;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10AP;
KW   Gypsy10-I_AP; Gypsy10-LTR_AP.
XX
NM   Gypsy10-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-329
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 456-456 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 329 BP; 94 A; 53 C; 66 G; 116 T; 0 other;
     tgtagtaatt aaattatata ttgtcatttt atcgatagcg ataagcgcgg gccggacgat        60
     cgatacgaac gtcgatcgta ctggtggcga attagtgtag tcgcgaccat cgaccgtacc       120
     gtgtgacgat cggaaattat tacggaatat aatattgttt tagtttcatg tgtgtttgtt       180
     ataacttata ataaattggt gatcaatccg tgacccatta ataaaagggg ttgagattat       240
     atacttacgt aattctttta ttcatttctc accttttatt aatttgtacg ctcaggtaca       300
     atagtgcgca ttataacgtt tgtaccaca                                         329
//
ID   Gypsy10-LTR_Dpse repbase;    DNA;    INV; 538 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   03-JUN-2019 (Rel. 24.06, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10_Dpse;
KW   Gypsy10-LTR_Dpse; Gypsy10-I_Dpse.
XX
NM   Gypsy10-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-538
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1078-1078 (2009).
XX
RN   [2]
RP   1-538
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-JUN-2019).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated.
XX
SQ   Sequence 538 BP; 166 A; 134 C; 88 G; 150 T; 0 other;
     agttaacgta cccaattcca ttgagctctt atacgagttg taaacaatct ttggctttcc        60
     aaaacgaaaa caatttcaat cttgggcctc cgcctaattg atttctaaga tgtacaatct       120
     caagcgcccc cgccgcaatc ccaatctttg acactcgcct aaatggaaaa ccaatgtttg       180
     cccacacccg gcttctcata aacaatctca ctcccggctt tctgcagatc ctgcacttta       240
     ggccttttac agttctctct ttggatgacg aaatccaata ctcgggatgg cgaaatcaat       300
     tgaaatgttt atagaaaaac gattcccgaa agggatcaac gatgcaaaga tcagaaagtt       360
     caaatcagtc ttgatcgagc agcgacaccg caaagtctag ctaaatatta atatcgcgca       420
     atcccttggc ccggaattcc tttgtgaccc tctacttata tctatatcag tgaagttaag       480
     ttcgaagtaa aataaaaacc tttttaaaaa cacaatccgc tgccgcagtt gtttaatt         538
//
ID   Gypsy10-LTR_Dya repbase;    DNA;    INV; 2334 BP.
XX
AC   .
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   22-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat,
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10_Dya;
KW   Gypsy10-LTR_Dya; Gypsy10-I_Dya.
XX
NM   Gypsy10-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2334
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1079-1079 (2009).
XX
RN   [2]
RP   1-2334
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (22-OCT-2019).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 2334 BP; 718 A; 457 C; 457 G; 700 T; 2 other;
     tgtagtgtcg actgaagagc cgctaaataa attttagata aaccataaaa gatataaaca        60
     ttttctgcct agaagtatgc actaaattat gtgacactct gagcctggct ttacgcgacg       120
     ggaataacgt cgatgcattt cagtaaaagc tttacgtagt ttaagctgag ctttaatgca       180
     catgcatttt taattagcta gctgcatttc tgccagaaca gagttttgga cacaaatacc       240
     agatagctca tggatgcgcc agggaagatc tggaaagctt tagtctgatt aggaaatttt       300
     tatgctgtgg cagagaaaaa agtgctaagc gactccatcc gtttccgtgc taaattctat       360
     tccttttgag atccggtaga gtgcaaatcg ttgcagtggc cgataagata tataataatc       420
     acatagtgcc agtgtccacg cggattgtga aaatctggtg gcggaaaaat ttattcggcg       480
     aaagcttaac caaactcaag taggtaaaga cgttttcatt tgcatacaga tgcataacct       540
     tttgttgccc aggtcacgga aagagtgtcc acggaggcaa ccaggcggcg gactgacagc       600
     cagtgccata gggcggtctg gaaaaccctt atatttcatc ggggctcaac cagcggatct       660
     agcccagcaa gccgagtttg cgtcctgtcc cgaggagcac cctgggaggg gcaggatgga       720
     ctactaggag agcagcagca gaagcagtag gagaatgatc ggcawataac ctcaagtgca       780
     gtttaattgg ccaacagcgc gcatgcgcaa tagcctacag tggccagctt tggcgtttta       840
     tggaacagtt aatggaaatt ggcagtgccg aaagtgaccc aataattttg accccagttg       900
     accccagcac ccatgtgggt ttaacctaaa aagattcaga aagtggatct aaccccaagt       960
     ggtagtgtag atccgagcat ccgatgtccg actataaatt ttcttgtgca ttaaatcaaa      1020
     accattaaat gggttttaac ccagttctgc cgaattaaaa tttcttgcaa ttttcgccac      1080
     aaattggtca taacctgtat cgagttacct aacttttacg acactcatat gaaatgtttt      1140
     tgtgaatttg attctggtaa tggaagccat gaatagttga tgaaaaccct ctgtaaaatt      1200
     agaatacatt tatttttata atttaagtaa agttagttaa aatctaagaa aatttctctt      1260
     gttgcgaagt gaaacgaatt gtgtagaaga atgccttttt aactcttttg tttaaactaa      1320
     tgccttaaaa ccccaaagtg gcctgccaaa gccatacaat tttcagcaca ccttcgaggg      1380
     agatcgatct ttcgccgatg gataagatgc gtgagtttat ataactttgt ttttaagtgc      1440
     taacccaaac ttaagagaaa tttattaaat ggcaatgata taaaagaagt taagaaacga      1500
     attaaatgcc gcaacaaccg aaatttggct atcgctgtaa taaattaaat atttttttaa      1560
     aatttgtcgt gaattaaaat gaagtttaat tgaatttaat taaaagaaat ttcacaatgg      1620
     agttaaacga gaagttgtct accaatgaat taaattagat aatcgaaact attccttatt      1680
     aatttaattc ttatcacmat taacatttat atctaaatcc ccacattttt actacatatt      1740
     attaaatcat gcgatacata aatattctta taactatcta agcttataat caaactacct      1800
     atatacgatg ttagtcttaa ttactttatg tttattaaat ttaatgttta acgaaatcat      1860
     gagcaactaa acatttcctt taccgactct actgatgact ccacggtcgt aaggttgcaa      1920
     gggatcatcg gagccatgct cctgcggaag atgatcatag gttgggtggg cctcaagcga      1980
     gcacaacaac atccgtgtcc tcgcaaatga tagttttctc tctgtctttt cctctatctt      2040
     tcgtcctttc ttctaacttt cattttctag aatttattta tttatttttc ttccggttta      2100
     gttctagctc ctattttttt gtcgcaagca cgctcaattc ttgtctttat taatagtgat      2160
     gtgtagtccg tgtccgagat ctgggtgagc aagaccacca cccccaaagc cgaagagcta      2220
     gagccggaat ctaaagcgtg ccccgcagct cagatcctcg aaagcctgcc taacgcaagg      2280
     agttataatt ccttctcgta ttgagaacag tggcgcacta cgttacacgc taca            2334
//
ID   Gypsy10-NVi_I repbase;    DNA;    INV; 4775 BP.
XX
AC   AAZX01006256;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10-NV;
KW   Gypsy10-NVi_LTR; internal portion; Gypsy10-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4775
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1147-1147 (2007).
XX
DR   Genome; AAZX01006256; Positions    7410    2636.
XX
CC   Positions [3509-4021] - Integrase core
CC   'ATTAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(122..2986,2990..4726)
FT                 /product="Gypsy10-NV_I_1p"
FT                 /translation="MPKFGMNDDETNKGEDHFPEICAATTLVNLGNTTGQY
FT                 SWPTATGTTTTTSQSSRIQSPAQHQIVPTSYGTYLIDGQEYSKTSTGFVPV
FT                 STYNGGITDGQSNIPSNTPPPTIMQVPVVNFAGNIGRLEEFKINSDWNIYH
FT                 ERLEQYFNANFVDDARKVSVLITAIGPEVYKILRNLCDPQLPHDKPYTELC
FT                 EILSKQFSPRISIFQQRKRFYDLQQNSGESISQWYARIKKGAVHCDFGTEL
FT                 EGRIKDKFVTGMKEGKILDRICERSHKDALKDIYETALAKEASLAVSANSN
FT                 QCDVNKLTQHNRGSSSKKNAGEAGRGERGKQQCATSQSQPRDGAARQQGSS
FT                 KQQKASCNHCGGVNHVFSKCKYKTYKCNNCSKKGHISKVCKEPKNGEVKYL
FT                 EDGPDTETNYISLHNIVDREDAIPPIQTDVFIEGKRVVMEIDSGAGVTIIP
FT                 FEIYKKKQLTAKIEKCQKVIKTYDNRPIKPIGQIVVDIIANDVTVRDAKII
FT                 IIKENRQVSLMGRDLMNKLNISLVGPQRPIDVKKIDLNSPDDLKKLLNKYA
FT                 DLFDGQLGKLKGDKVHLKLSSDAKPVFLKPNSIPFAFKSQVESDLKRLQDQ
FT                 GVIEKIDTNDWGTPLVPVLKEDNTVRTCANYKKTINPWLVDHRYPIPRIEE
FT                 IFSALKGGEEFTKLDLEWAYNQIEVDEETSRILAWSTHMGVFKVKRLSFGP
FT                 KTACSIFQEKIEGVVRDLQGCKNYFDDLIVTGKDRKKHLENLENVLKALKD
FT                 HGLKLRKNKCEFMKPRVFYLGHIIDKNGLSKNPENVKAIVEIKRPTNVQEI
FT                 QAFAGMVNYYMKFIPNLSTMLSPIYKLLKKDTPFVWSKECEQSFNEIKREL
FT                 AADRNLVHYDPDLEVKLTCDASNVGIGSVLSHVLPNREEKPICFASRTLTK
FT                 SERNYSVIQKEALAIYWSVKKFYQYLIGRPFILESDHKPLLAIFGEKNGLP
FT                 MAAGRLQRWALFLSGFNYKMKYVKGKNNGGADGLSRLPLRVDDKVNEPNDE
FT                 YINFLIEEKLPVDYKQIVKEIRTDVVLSKVYVYSKNGWPDQVADELKPFMY
FT                 RANEISIENNVLMWGYRVLIPKKLRDRILDELHCTHMGANKMKSIARQYFW
FT                 WPKLDSDIEQYSKNCDVCNTLMSNPKKAELIKYDQCKEVLERVHADFLGPI
FT                 QGKMYFILTDAYSKWPEVYVMSSTNSTNTVNKLRDFCSRFGLPRKIITDNG
FT                 PQLVSEEFESFCRSNGIKHPLIAPYHPSSNGAAENAVRSFKNGFKKALLDP
FT                 KNSKLNEETIISRYLFAYRNSPHAYTGESPAKLMFGRQLRNCFDLLRENNT
FT                 IQQNKERQMRNYKGNRSEYFDIDDIVWVLDYRCPTKKVWTKAKIIDCLGER
FT                 NYICKTLNEELYWKRHLDQMRRASNFVENDIINMNDRPNNSTESVTNDIVT
FT                 SSVSFPLNGKHKDSGMNNDIIIPNNIEDKQVIEKRHEMSSSEFRREESVIP
FT                 SKIENNVIDRDNVRVKETNGENSIVKTTNEKTNIETVGNAGNKSQKPPITL
FT                 NVNERPKRTIKPPKRLNL"
XX
SQ   Sequence 4775 BP; 1758 A; 769 C; 1022 G; 1226 T; 0 other;
     ttggcgacga ggataaaaac tttgataaaa acacatggtg ttatagtggc aaggaataca        60
     gtgcaatcgt taaatagtaa agtgttacaa taacggaagg cacaaaaggt agaggtacaa       120
     gatgccgaag tttggcatga acgacgacga gacgaacaaa ggagaagatc atttcccgga       180
     aatatgtgcg gctactacgc ttgtgaattt gggaaatacg acaggtcaat actcgtggcc       240
     aactgcaaca ggtacaacaa caactacttc gcagagttct cgaattcagt cgccagcaca       300
     acatcaaata gtcccaacgt cgtatggtac gtatctaata gacggccaag agtacagtaa       360
     aacatctacg ggatttgttc ctgtttcaac gtataacggc ggtataactg atggacaatc       420
     caatataccc tcgaacacac caccgcctac gatcatgcaa gtgcctgttg taaattttgc       480
     cggtaatatc ggaaggttgg aagaatttaa gattaattca gattggaata tttatcatga       540
     acggttagaa cagtacttta acgcgaattt cgtggatgac gcaagaaaag tgtcagtact       600
     aattacggct ataggcccag aggtttataa aattttaagg aacttatgtg atccgcagtt       660
     gcctcatgat aaaccgtaca cagaattatg tgaaatactg agcaaacaat tttccccacg       720
     aatctccatc ttccagcaaa gaaaacgatt ctacgatctt caacaaaaca gcggtgaatc       780
     gataagccaa tggtacgcac gtataaaaaa aggcgcagtg cattgtgact tcggcacgga       840
     gctcgaagga agaatcaaag acaagttcgt caccggcatg aaagaaggga aaatcctcga       900
     cagaatctgc gaaaggtcac ataaagacgc cctgaaggac atctatgaaa cggccttagc       960
     aaaggaagca tcgttagcgg tttcggcgaa cagcaaccag tgcgatgtaa acaagttaac      1020
     gcaacacaac agggggagca gttccaagaa gaacgcggga gaagccggac gaggggaacg      1080
     agggaaacag cagtgcgcaa cttcacagtc ccagccgaga gatggcgcag cgaggcagca      1140
     aggctcatca aagcagcaga aggcttcatg taaccattgc ggcggtgtta accacgtttt      1200
     ttccaaatgt aaatataaga cttataaatg taataattgt tcaaaaaaag gacacataag      1260
     taaagtatgt aaagaaccaa agaatggtga ggttaagtat cttgaggacg gtccggatac      1320
     cgagactaat tatatatcgt tgcataatat agtagaccgc gaggacgcga ttcctcctat      1380
     tcagacagac gtttttattg aagggaaacg ggtcgttatg gaaatagact caggcgcggg      1440
     agtaacgatt ataccatttg agatttataa gaaaaaacaa ttaaccgcta aaattgagaa      1500
     atgccaaaaa gtaattaaaa cgtacgataa tagaccaatt aagccaatag gccaaatagt      1560
     ggtagatata atagctaatg acgttacggt aagagatgct aaaattatta ttataaaaga      1620
     aaatagacaa gttagcttga tgggtagaga cttaatgaat aagcttaata tttcgttagt      1680
     aggacctcaa aggccaatag acgttaaaaa aatagatctc aattcaccag atgacttgaa      1740
     aaaattattg aacaagtacg cagatttatt cgatggtcaa ttaggaaaat taaaaggtga      1800
     taaagttcat ctaaaattga gtagtgatgc gaaaccagtt ttccttaagc ctaattcaat      1860
     cccatttgct tttaaatctc aagtagagtc agatttgaaa agattgcaag atcagggagt      1920
     tattgagaaa atcgatacaa atgattgggg tactccatta gtcccggtac taaaagagga      1980
     taatacagtt agaacatgcg caaattataa aaaaactatt aatccttggc ttgtagatca      2040
     tagatatccc attccgagaa ttgaggaaat attttcagct cttaaaggtg gggaagagtt      2100
     tacaaaattg gacctagaat gggcttataa tcaaattgaa gttgacgaag aaacgtctag      2160
     aatattggct tggtctactc atatgggagt atttaaggtg aagcggttat cttttggacc      2220
     aaaaacagct tgctctatat tccaagagaa aattgaagga gtagttagag atttacaggg      2280
     ctgtaaaaat tactttgacg atttaatagt aacgggtaaa gataggaaaa agcaccttga      2340
     gaatctagaa aatgtattga aagcgctgaa agaccatggt ctaaaattaa gaaagaacaa      2400
     atgtgagttt atgaaaccaa gagtttttta tttggggcac atcattgata agaatgggtt      2460
     gagtaagaat cctgaaaacg taaaagcaat cgttgagata aaacggccga cgaacgttca      2520
     ggagatacaa gcttttgcag gaatggtaaa ttattacatg aaattcatac ccaacttatc      2580
     aacgatgctt agcccgatat acaagttgtt aaaaaaagat acgcccttcg tatggtcaaa      2640
     agagtgtgaa cagtcgttta acgagataaa aagagaacta gcggctgata ggaatctagt      2700
     tcactatgat ccagatctag aggtcaaact gacctgtgat gcttctaatg tgggaatcgg      2760
     atcagtacta tcacacgtct tgccaaacag ggaagagaaa cccatttgtt ttgcctcgcg      2820
     aactttaacg aaatctgaga gaaattattc cgtaatacaa aaagaggcgt tggccatata      2880
     ttggagcgtt aagaaatttt atcaatattt aattggcagg ccatttattc tggaatcgga      2940
     tcataaaccc ttactggcaa tttttggtga gaaaaatggg cttccataaa tggctgcagg      3000
     acgtctgcag cgttgggctc tctttttaag cgggtttaat tataaaatga aatatgtcaa      3060
     gggtaaaaat aatgggggag ccgatgggct atctagatta ccccttcggg ttgacgataa      3120
     ggtcaatgaa cccaacgatg aatatattaa ttttttgata gaagaaaaat tgccggttga      3180
     ttacaaacaa attgtaaaag aaattagaac agatgtagtt ctgagtaagg tttacgtgta      3240
     ttctaagaat ggatggcccg accaagttgc ggatgagtta aaacccttta tgtatagagc      3300
     aaatgaaata agtatagaaa acaatgtatt gatgtggggt tacagggtat taattccaaa      3360
     gaaattaaga gataggattt tagacgaatt acactgtaca cacatgggtg ctaataaaat      3420
     gaaatcgatt gctagacaat acttctggtg gccaaagctg gactccgata tagaacaata      3480
     ttcaaaaaat tgtgatgtat gtaatactct aatgagcaac ccaaaaaaag ccgaattaat      3540
     taagtacgat caatgtaaag aagttcttga gcgagtacac gctgattttt tgggaccaat      3600
     acaagggaaa atgtacttta ttttgacgga cgcttactca aaatggcccg aagtatacgt      3660
     catgagttca actaattcaa caaacactgt aaataagcta agagatttct gttcgagatt      3720
     tggattaccc agaaaaatca taaccgataa tggtcctcaa cttgtttcgg aggaatttga      3780
     aagtttttgc agatcgaatg gtataaagca tcctttgatt gctccatacc acccttcttc      3840
     gaacggcgct gccgaaaacg cggtaagatc ttttaaaaac ggttttaaaa aagcacttct      3900
     tgatccaaaa aattcaaagc ttaatgaaga aacgataatc tctcgatatc tcttcgctta      3960
     tcgcaattca cctcacgcat atactggaga aagtcctgcg aaattgatgt ttggtagaca      4020
     gttgcgaaat tgttttgatc tcttaagaga aaataatacg attcaacaaa ataaagaaag      4080
     acagatgaga aattataagg gtaaccgtag tgagtatttt gacattgatg atattgtatg      4140
     ggttcttgat tatagatgtc ctaccaaaaa agtttggaca aaagcaaaaa tcattgattg      4200
     tttaggcgaa agaaactata tatgtaaaac tcttaatgag gaattatatt ggaaaagaca      4260
     tctagatcaa atgcgtagag cgtcaaattt tgttgaaaat gatattatca atatgaatga      4320
     tcggcctaat aattcaacag aaagtgtaac aaatgatatt gtaacatcga gtgtctcctt      4380
     tccattaaat ggaaagcata aagatagtgg aatgaacaat gatataatta taccaaataa      4440
     tatcgaggat aaacaagtaa tcgagaagag acacgagatg agtagttccg aatttaggag      4500
     ggaggaaagt gtgataccta gtaaaataga aaataatgta atagaccgag ataatgttag      4560
     agtgaaggag acaaatggtg aaaacagtat agtcaaaact accaatgaaa aaactaatat      4620
     cgaaactgtc ggtaacgctg gaaataaatc ccagaaacca ccgattacct taaatgtaaa      4680
     cgagcggcct aaacgtacta taaaaccacc taaacgttta aatttataat aaataagagg      4740
     tactaaaact taagtgttaa ctaagggcgg aggta                                 4775
//
ID   Gypsy10-NVi_LTR repbase;    DNA;    INV; 178 BP.
XX
AC   AAZX01006256;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10-NV;
KW   Gypsy10-NVi_I; Gypsy10-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-178
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1148-1148 (2007).
XX
DR   Genome; AAZX01006256; Positions    2635    2458.
XX
SQ   Sequence 178 BP; 48 A; 45 C; 50 G; 35 T; 0 other;
     tgtagcgaag tggcgccctc tgcgaggagc tgaatatact aggagaacgt ggggggcaga        60
     acgaaagggt ccggcctagg acgcggacgt tgaccagagc ttgtaccata acctatataa       120
     taaagacgag tattcctcag acgcgtggct attcttatta cccgaccacc ccgctaca         178
//
ID   GYPSY10_I   repbase;    DNA;    INV; 5278 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   22-NOV-2021 (Rel. 26.11, Last updated, Version 3)
XX
DE   GYPSY10_I is an internal portion of the GYPSY10 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY10_LTR; GYPSY10_I.
XX
NM   GYPSY10_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5278
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY10, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 4-4 (2002).
XX
CC   GYPSY10_I is an internal portion of the GYPSY10 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY10_LTR.
CC   GYPSY10_I is flanked by 7% divergent LTRs. Therefore, the
CC   age of GYPSY10 can be estimated as ~4 million years old.
CC   The internal sequence is incomplete because of multiple
CC   deletions.
CC   Open reading frames, which originally encoded gag, pol and env,
CC   are
CC   corrupted by mutations that cannot be reversed because of a small
CC   number of available copies of GYPSY10.
XX
SQ   Sequence 5278 BP; 1905 A; 1105 C; 1013 G; 1255 T; 0 other;
     gacgcccaac gcgcttaagt gtcgtaataa cgtaaactcc gtaataaaaa tatctaaaaa        60
     tcaaggtctc gtaaccgggt tttctttgaa aacgcttcgg actcgcacgc tgcacaacaa       120
     cagtgaacat caacacacaa acaaaaatat ctaatgcaaa agtaaaacaa cgccgcacaa       180
     gcaacagtga aaaccgctgc atatcaacag taaacagcta aaacgacagc cagaggataa       240
     acggtcaacc agcaaccgtc ttcgctgcat tttaatatac caatataaca tgtaagtgag       300
     atctttattt tcaatttacc tcttttaacg tcaaccagat atgtgtgcca tttttgaaaa       360
     aaatacaaaa ctcataataa ataacgaata aaacaaataa aaagagtgaa tacaattaaa       420
     actttaagta tagtgatttt aatttacaaa ttgattagaa aaaaaaaaat gaagaatgaa       480
     aatttaagtc tttcctaaga agtaattctt tctcatacaa agatatcatt gtccgatgta       540
     tagaaatagt atcgaaaaca acgacagtga cgaggactta atacagagct ataaagacat       600
     aagaaacaat aaccaacatg ggggttacat tgacggtact gagaccgacg aagatataga       660
     attaaaaaac ttaatagacg gctttacaga cagagtaaaa atggttaacg atcaagaatt       720
     tcaaaatcaa cctcaggacc ttcaacaaga ggcaacacca acacaggaac aggcgaaaac       780
     ctcaggtacc attagtaata aagatgtaat tagactcatg gaagcggccg taaatggtgc       840
     actagtgcac cagcatcaac aaaaaatatt ctcagacaag cttaaagagg ttgaaaatag       900
     gcagagaata aacgatggtg gacccttagt ggtatacgag caaataccac ataatgctgc       960
     tattccttgt aatgaaccac tagacttggt aaagtccata cccagttttg acggaaaaca      1020
     agatgaatat gtggtatgaa gaaccgcagc agttaacgcc tacgaaatct accataataa      1080
     tataataata tataatagct agaatgggct gcgcatgtgc agaacaaact ccaatcgagg      1140
     tgacgcagca gcaaatggtt actatgcgtc agggagatct tcctctaatg acttttataa      1200
     tgagattgag agaaagctaa ctcttattat tagtaggact tttttgtctt atgagacaaa      1260
     tactgccgct atcttaaaaa atagatcacg gcaggacgct ttgaacgctt ttgtgaccgg      1320
     gctaaaaaaa tcagtccgaa atgtagttct ctcagctgcg cccaaagatt tgccatcagc      1380
     attggccgtg gctcaacgga cagagtcctg caatgaacga gcctggttcg ttgcaagctt      1440
     taataaaaat gtagaagaaa aatcttacaa ttcagaaaac cgtcgccaag gtaaccgttt      1500
     tcataacacc ccacaaagta ataaccacaa caactcccag ggtgctttcc agagaaacta      1560
     aaacaataat ccaccgtgca ctagtaatca agctaatggc tctcaatttt ctaaaaacca      1620
     aagataaaaa ggccaagcgc atcagaacaa tgaatcaaaa aatcttcgat aaggttatac      1680
     gcaaaaccta ggtcctgaac ccatggacgt cgatcccaca tcacgttcta aattcaggag      1740
     cgaacggaga gctcgcagta gtcaacggtt gaaccagaac aagagcagtc aaatgaccag      1800
     gagtataggg taaagtcatc ctacgaagca gcggaaatcg aggctgataa cacgtccgat      1860
     tccgaatcat gtaatttttt aggggacgtc cctgctcccc caaataattc gttcgatagc      1920
     ggggcgagaa attaggttac tgttggatac agaagcctcc aaaaattaca taaaacctct      1980
     aacagaatta aaacacttca aaccggtgga aacaccattt gaagtcacat caatccatgg      2040
     tcatacaaaa atagaacaaa agtgtctgat ccatctattc aatgttaagt catacttctt      2100
     cttgttaaac aacctgaacg aatatgaagg aattgttaga ctggatttgc caaaaaaggt      2160
     caatgcaaaa attgatctaa caaaaaacat catcgagcat gatcatggta cggagcaaat      2220
     tttttactca aaatgcagga atggtaactt tattaacatc gatgacgtgg acgtgccgaa      2280
     agccataaac gaaaatttca aaaagatgat caaaaacaga tcaaaagcct ttgcggaccc      2340
     aaacgattcc ctccccttca aaatgaatac ggtcgccacg atccgcactg acggggaacc      2400
     cgtatattca aaactttacc catatccgat gggtgtagcc gatttcgtca atacggaggt      2460
     taagcaacat ctagcagacg gaataataag gccatcccgg tcgccttaca ataacccaat      2520
     ttgggttgtt gataagaagg gttttggcgg agaaggtcat aggaagaaac gtctcgttat      2580
     taacttcagg aaactgaatc aaaaaacaat tgatgacaag tatcctatac cattcatatc      2640
     gaccatactg tcgaactttg gaaaagctca gtacttcacg actcttgatc tgaagtcggg      2700
     cttccatcaa attgagccct cggagcgctt tcgagaaaag acagcttttt agtagtatga      2760
     attctgcaga cttccctttg ctttaaaaaa tgcgcctagt attttccaat agacgatgtt      2820
     ctgagagaac acatcggcaa aactcgctat gtctacgtcg atgacgtaat atttttctcc      2880
     caaacaatgg agagtcatgc caacgatata aacacggttc tgaaaacttt gtgcgatgca      2940
     ggtatgagag tgtctgtaga aaaatctatg ttctttaaag agaacgtaga atatttggga      3000
     ttcatagtgt cccgaggggg aattaaaact tcacccgaaa gggttaaggc tataaaacaa      3060
     tttaaacctc catcgacatt gttaagtctc aggtcatttc tgggattggc cagttattat      3120
     ataatagatg tttcataaag gggcttttta gcatcgcaag acctctgacg aatattctaa      3180
     aaggtgacaa cggaaaaatt ggtgctacca ctcaaagaaa gtcaaactgg aacgagcagc      3240
     gaaaatcatt cgaaaaacta agaaacaccc tggagtctga ggatgtcatt ttggcatacc      3300
     cagattccac tcagccattt gacttgaaaa ctgacgcctc tggaagcggc ctaggggctg      3360
     ttcttttaca gatttaatcg gcagcggcag aaatcaccgc aaattgcaga acgtgttccg      3420
     aagcaaaaca ccaatcgtca cccagtgcaa caaaccatag cggaaacatc aattcctggt      3480
     tacactgggg aaagtatcca catagatata ttttggactg atcaaaagca ttttctaacc      3540
     tgtatcgaca agttttcaaa atccgctata gtccaaccaa tcgattcaag agcaatcgta      3600
     gatatcaaaa ctccgatact acaactaata aatctgttca ccaaaataaa aacagtttac      3660
     tgcgacaatg aaagatctat caattcacaa accatacgaa ccatcctaga aaataggtat      3720
     ggtatacggg tctcaaatgc gcacccgttg cacagcacat ctaatggcca agttgagaga      3780
     tttcatagca ccctagggga aatcgcacgg tgcatcaaga tagatcaaaa cataaccgag      3840
     acgagcgacc ttattctatt cggaacaata gaataggaca gaactgtcca ctcggttaca      3900
     attaaaaagg gtcatgaaat agttcacgct attccaccag attttacgag caccataaga      3960
     gacaaaatca aagaggccca agagaaaaca cttaggtact caaatgcaca caaatgcaat      4020
     aaacagtacc aaataggcga aaaaatctgg ttaaaaaacc aacagacgcc tgggtaccaa      4080
     attaacgcca ctctgctcag aagaggtcat cgaggctgat ctcggcacga cagtgcttat      4140
     tatggagcaa cgaacattac atcgtacgag acttacgcgg acgagacgaa acacgcgatg      4200
     gatttcttcg agaaggagca catgagacgg gtacttgaaa cggactagga acgaatagag      4260
     actcttctgg acacactaaa ggtacgtcac agacatgccc gtagtcttaa tttctcttaa      4320
     ttttctctta atttctctta atttgctttg aaagcaatag agtggacacc tgactctgac      4380
     ggctgagacc aggtgaggtt ttgacaggaa cagctaacgg actcggtaaa cggacagata      4440
     gatttaaaca acaaaataca attgcaatta aacacaatga cctcgtccat gaattctatt      4500
     ttaaaatcgg acgacttaga cacagaacat ttgtacgaga cgattttggc aaaaaaccgt      4560
     attgtaattc aagaacttga aaatttaata cttgcaatca ccctttccaa attaaacgta      4620
     ataagtccaa taatcttgaa tgacgttgac gtaagggaga ttgaaaaaac ttttcaaaat      4680
     cgagacctat tgtacttttt aataaaattt ccgaagcctt tgttaacttg tagaaaaata      4740
     agaatattcc cggtacagca tgaaaataga atcttagatt tcgaggacgg tagcacggtc      4800
     gcggattgcg ggacggaaac cttcgccgtc aaggactgca atgtatcacc accttctgca      4860
     ggagatcgaa agcgccaacc tgcgcacaac aactcatctc tggcatggtc gcccactgca      4920
     acacccagcc tggacacttg gacccactca ccatgatcga ctagggaatg ctcatcacga      4980
     acgatgtaac gataaatatc accgacgaaa agggaataag ccggataata tcaggaactt      5040
     acccggtatg atataccgaa aaaattaaaa taaacggcac ccttttacgt taacaatatc      5100
     ggaacatcaa agaagaaagc cgcagtttca gctatggccc aagtaaacgt tctgagacat      5160
     atagagcgcc ttactctgtc ctggaaagaa agatgatgat ctttcttatc taccgtttga      5220
     aagccaaacc aactaagacc attgaatccg aggacgaatt catcttaaga caaggagg        5278
//
ID   GYPSY10_LTR repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   22-NOV-2021 (Rel. 26.11, Last updated, Version 3)
XX
DE   GYPSY10_LTR is a long terminal repeat of the GYPSY10 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; GYPSY10_LTR; GYPSY10_I.
XX
NM   GYPSY10_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-364
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY10, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 5-5 (2002).
XX
DR   [1] (Consensus)
XX
CC   GYPSY10_LTR is a long terminal repeat of the GYPSY10 endogenous
CC   retrovirus. There are several copies of GYPSY10_LTR in the
CC   genome; they are ~96% identical to the consensus sequence.
XX
SQ   Sequence 364 BP; 104 A; 89 C; 95 G; 75 T; 1 other;
     agttaacacg agcaagtcag aggggtgcaa cgacccgccg aaatgccatc caagaccgga        60
     tgtgccaaca acaacatcga cgacgctgaa tcagcccagt aacgcatttc gctttagcga       120
     aagcgatgtg cargggtcag cgtgatgcga ggcgggcatg tgcgcgctgg gtgaccgtcg       180
     aaggcatgta actccagacg gcacgaggcg ccgactaagc gctctgctaa gtccgctgcc       240
     tccaaccgaa gacttggcgg ccttaataaa ttcgatttgt agttagttcg taacagacca       300
     gaattcagag cagttggctc taataaaaga accatttaat aatacaaacg tatttggttt       360
     aatt                                                                    364
//
ID   GYPSY11-I_AG repbase;    DNA;    INV; 5781 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY11-I_AG is an internal portion of retrotransposon GYPSY11_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY11-I_AG; GYPSY11-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY11_AG; mdg1 lineage; reverse transcriptase.
XX
NM   GYPSY11-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5781
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY11_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 164-164 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY11_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY9_AG, GYPSY10_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG, GYPSY17_AG, and GYPSY8_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY11-I_AG consensus was reconstructed after multiple
CC   alignment of 7 copies.
CC   The consensus encodes the 445-aa GYPSY11_AG1p gag-like protein
CC   (pos. 772-2106) and the 2122-aa GYPSY11_AG2p (pos. 2067-5732).
CC   The sequence of the LTRs flanking GYPSY11-I_AG is deposited as
CC   GYPSY11-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           772..2106
FT                 /product="GYPSY11_AG1p"
FT                 /note="gag-like protein"
FT                 /translation="AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDR
FT                 TYDQVRQLNKCYRLCALTTLRNNTKELYDEIQELLRKHESSIKDEILTTLV
FT                 KKSRHLYYEINKCIKIHFERHPDSLNTTLSENQFDITIETKSDKMADIIEL
FT                 IKITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENRETIIELVLGRLTGK
FT                 ARIVVGEAPKSIEDIVNKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGSI
FT                 IEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLKDGETKIIMRSSK
FT                 FETLHEAIEQAVKLELEDRTKKGKNEQTKILYSNATRNNRGYGNNYQGRNN
FT                 YNRFTNNNNNRYQTQNPPRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANR
FT                 QNNSNRNQYVQSNQRNNSNLQNNRAPIHNTVTAEEQNNFLGQPQASENTQY
FT                 "
FT   CDS           2067..5732
FT                 /product="GYPSY11_AG2p"
FT                 /translation="FFRATSSIGKYPILTINPDADNFVKVKIEITKEIYST
FT                 LIIDTGATVSVLKASKLKPGCKINTSKKLTLISSSDHESETLGTAMTTIHF
FT                 GDYSIMHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLI
FT                 SHPIEDNVNGNYILPKRSEVVRKISIPNLTEDSIILSQEIQPGVFCGNTIV
FT                 SKRNQYIKFINTTDKDVSFNIKSYTPEVEPLREYEQLQKKLDTSKERIQKI
FT                 HNKIHIENIPQIAREELENLITKFSDIFCLEDEPVSTNNFYTQEISLKDNI
FT                 PSYIPNYKQIHSQTEEMQSQVEKMLKNNIIEHSVSSYNSPILLVPKKSGEG
FT                 KKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQ
FT                 IKLDKNSRKYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLTPEL
FT                 AFVYIDDIIVTGCSARHHISNLGKVFDRLRKYNLKLNAEKCCFFKTEVTYL
FT                 GHKITDKGIYPDDAKFDTIKNFPIPTNADEARRFVAFCNYYRKFVQNFAKI
FT                 AKPINNLIKKDVKFAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTD
FT                 ASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAINY
FT                 FKPYVYGQKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLAG
FT                 KANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMVKKNNEKTDINKDE
FT                 PIATTGTDHPAMWKTDRPLEVRKVLKIGTQRIKNNVEFIIYNHSYSKALGK
FT                 FLLRNDVNGSQALEFALLEMCKIAKQYGRNKLAWSEEDHLFEEYSQQTIKE
FT                 IANRAITKFEIILFTPTRWITTEKDRLRIISDYHMTPSGGHIGQYRLYQKI
FT                 REKYKWKNMKDDIKKYVRNCKACIVNKTTRHTKEKTVVTTTPTKPFNIISI
FT                 DTVGPLTKTNKNNRYAITIQCDLTKYIVVIPIHNKEANTIAKALVENFILT
FT                 FGTFIELKSDQGLEYNNEILHKISEILKIKQTFSTAYHPQTIGSLERNHRC
FT                 LNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHSDTNYTPYELVFGRKANLP
FT                 QDIFKTKIEPVYNIDQYYFEMKYKLQKSNEIARENLIKAKIKRQQTLNKDT
FT                 VPLIINLGDQVYLENENRKKLDPVYIGPFTVVSDQGPNCVIQNNTTKKIST
FT                 VHKNRLIKYTGE"
XX
SQ   Sequence 5781 BP; 2420 A; 980 C; 980 G; 1401 T; 0 other;
     tggcgaccgt gacttttaaa ctgtaatctt cggatgtgca aaaaaaaagt gacgaatgaa        60
     acctcaaaca cggacaaaaa gtgcaaagtg gaaacgtttt ataaaaatcg caagtgcttc       120
     tgaaatgact tggaaagtga ttaattacca acaatagtga actacgagtg aaaaccaatc       180
     attttcaaaa tgggaggcaa ggctgcaaaa cctgaaacaa atataaaagg agaccatgat       240
     ctcacaatag ttcaaactca gaatattcat acagaatatc atctgactca ggatttaaaa       300
     ctaaacatta ttttagggct gctaatcacc ctgtgcattg ttaaaatagc gaaaacttgt       360
     tacaaacacc ttcgtaacca agcgcaaaaa cacgctttaa aagtgcttac gctaccaaag       420
     tagcaacgta aacattgaat cgagaacagt gaatgaatga tatacgaaaa aggtgatatg       480
     ctatttgacc cacaaaaata ggtaaaggct gtgggaaagt accgtaagtt caccaatgca       540
     gctatggacc gcgattatga aaaacaatta tgcgcgtatg agaacctacc tcaacgtgta       600
     aaaacactgt gaccagcggt atggtttgga acagccgttc ccaacgcgga agacgagaag       660
     aataaggcaa gaatggacgg ttgctcactg tcggacagac aggtgaaaga agagatccct       720
     gggccaaggg acagcagttc accgagcacc gggaacaacg tagcaccgtg agcagcaaca       780
     acaacaaatg tatttaaaaa ggtaccgtac acatgcaatt tttacggacg aagctgcata       840
     aatatgcaaa agctgttaga aaaaatagaa atactagata gaacgtatga tcaggttaga       900
     cagctaaaca aatgctatag gctctgcgcg ttaaccacac taagaaataa cactaaggaa       960
     ttatatgacg aaatacaaga gcttctacga aagcacgaat catccattaa agacgaaata      1020
     ttaacaacct tagttaaaaa aagtagacac ctatattacg aaataaataa gtgcattaaa      1080
     atacatttcg aaagacatcc agattcgtta aatacaacat tatcagaaaa ccagttcgac      1140
     ataacgatag aaactaaatc tgacaaaatg gctgacatta tagaactaat taaaatcacc      1200
     acttctctca tatcaaagta tgatggtaat gagaaagatt taaaaggtgt ggtgtcaaat      1260
     ttaaatgtat taaagaaaat agtgaagccg gagaataggg aaacaataat agagctagta      1320
     ttaggacgtc tgacaggtaa agcgcgaatt gttgtaggag aagccccaaa atcaatagaa      1380
     gatatagtta acaaactaca agacagatgc agcataaagg taacaccaga aatagtagta      1440
     tccaaaatgg ataatacgaa acagacagga acaatagaag atttcggaag cattatagaa      1500
     aaactaacgc agcaacttga agaagcatac atagcggaag aaataacacc agaagtagcc      1560
     aggaaaaaag caactaagtc tggaattagc gcattgagtt atggacttaa ggatggcgaa      1620
     accaaaataa taatgagatc aagcaaattt gaaaccctgc atgaagcaat agaacaagca      1680
     gtaaaattgg aactagaaga cagaacgaaa aagggaaaga atgaacagac aaaaatttta      1740
     tattcaaacg ctactaggaa caatagaggg tatggtaaca actaccaggg aaggaacaat      1800
     tacaatagat tcacaaataa taataataat aggtatcaga cacaaaaccc acccaggttc      1860
     ccacccgcaa gatatggaca taacaataac cgaaacaata ataactacag aaataacaac      1920
     tttaacaaca ctagaaatca gcacgcaaat cgacaaaata attccaacag aaatcagtac      1980
     gtacaatcca atcagagaaa taatagcaat ttgcaaaata atcgagcgcc tattcataac      2040
     acagtaacag ccgaagaaca gaataatttt ttagggcaac ctcaagcatc ggaaaatacc      2100
     caatactaac cataaatcct gatgcagata attttgttaa agtaaaaata gaaattacaa      2160
     aggaaatcta tagcacactc atcatagata ccggagcaac cgtatccgta cttaaagcta      2220
     gtaaattaaa accaggttgt aaaatcaata catcaaaaaa attaaccttg ataagctcta      2280
     gtgatcatga atcagagact ttaggaactg ctatgacaac aattcacttt ggcgattatt      2340
     ccattatgca cgaatttcat ataatagaag atgtagaatc cattttttcc gacggactat      2400
     taggaaaaga ctttataaag cacagatgta ttgttgatta tgttaattgg atgatatact      2460
     tctcatctga taacggattg atttcacacc caatagaaga caatgtaaac ggaaattata      2520
     ttttaccaaa acgaagtgaa gtagtacgaa aaataagtat accaaacttg acagaagatt      2580
     caatcatctt atcacaagaa atccaaccag gggtattttg cggaaacaca atagtctcaa      2640
     aacgtaatca gtatatcaaa ttcattaata ccacagataa agatgtttct tttaacataa      2700
     aatcttatac accagaagtt gaaccattaa gagagtatga gcaattacag aagaaacttg      2760
     acacatctaa ggaacgaatt cagaaaattc ataacaaaat ccatatagaa aatattccac      2820
     aaatagcaag agaagagtta gaaaatctta tcacaaaatt ctcggatata ttttgtttag      2880
     aagatgaacc ggtctctact aacaattttt atacccagga aatttcatta aaagataata      2940
     ttccttctta tataccaaat tataaacaaa tacattcaca aacagaggaa atgcaatcac      3000
     aggtagaaaa gatgttgaaa aataacatta tagaacattc tgtttcatca tataattcac      3060
     cgatactatt agtaccgaag aagtcaggtg aaggaaaaaa gaaatggcgt ttagtagtgg      3120
     attttcggca attgaacaag aaaattttac cagacaaatt ccctttacct cgcatagaca      3180
     cgatactaga tcagctagga agagccaaat atttcagcac attggatttg atgtcagggt      3240
     ttcatcaaat caaacttgat aaaaattcga gaaaatacac agctttttcg acacctacag      3300
     gccactatca gtttacaaga atgccatttg gactcaacat tagcccaaac agctttcaaa      3360
     gaatgatggc tatcgctatg gctggtttaa caccagagct agcatttgta tatatagatg      3420
     atattatagt tactggatgc agtgcacggc atcatatcag taatttaggt aaagtttttg      3480
     ataggctaag aaaatataac cttaaactaa atgcagaaaa atgttgtttc ttcaaaacag      3540
     aagtaacgta cttaggtcat aaaataacag ataaaggaat ttatccggac gacgcgaagt      3600
     ttgacacaat taaaaacttc ccgattccta ctaatgctga tgaagcaaga cgttttgtcg      3660
     cattttgtaa ttattaccgt aaatttgtac agaattttgc taagatagct aaacctatta      3720
     ataatttgat taagaaagac gttaagtttg catggacttc agaatgtcaa gcagcttttg      3780
     atacattgaa acaaagctta ctctcaccca caattttaca atatccagat tttaaaaaac      3840
     aattcattat tacgacagat gcatcggata tggcatgtgg tgcagtgtta tcacaaataa      3900
     cagatggaaa cgatttgcca gtcgcatttg cgagtaaaag ttttacacca ggggaaaaga      3960
     ataagccaat tatcgagaaa gagcttacag ctatacattg ggcaattaat tattttaaac      4020
     cttatgtata tggacaaaaa tttatagtta gaacagatca tagaccatta gcatacttat      4080
     ttggtatgaa aaatcctact tctaagctta ctagaatgag actagattta gaagaatttg      4140
     actttgaaat agaatattta gcaggtaaag ctaatgttgc ggcagacgca ctatcaagaa      4200
     taatccttaa ctcagatgac ctaaaagcat caataccaaa atccaaaacg attttaatgg      4260
     ttaatacaag agccatggtt aagaaaaata acgagaaaac tgatataaac aaagacgaac      4320
     caatcgcaac aacagggact gatcaccccg cgatgtggaa aacagataga cctttagaag      4380
     tgagaaaggt actaaaaata ggtacgcaga gaattaagaa caacgttgaa ttcataatat      4440
     acaaccattc atacagtaaa gcactaggaa aatttctttt gagaaatgat gtaaatggaa      4500
     gtcaagcatt agagtttgct cttctagaaa tgtgcaaaat cgcgaaacaa tatggaagaa      4560
     ataagctagc atggtcagaa gaagatcatt tattcgaaga atattcccaa caaactatta      4620
     aggaaatagc caacagagcc attaccaagt ttgaaataat cctgtttact ccaactagat      4680
     ggataacaac agaaaaagat aggctgagaa taatttcaga ttatcatatg accccttcgg      4740
     gaggacatat aggccagtac agactgtacc agaaaataag ggaaaaatat aaatggaaaa      4800
     atatgaaaga tgatatcaag aaatacgtac gaaattgtaa agcatgcata gttaataaga      4860
     cgactagaca tactaaagaa aaaacagttg taactacaac accgacaaaa ccatttaaca      4920
     taatttcaat cgacacagta ggacctctaa caaaaactaa caaaaacaac aggtatgcaa      4980
     taaccataca atgtgactta acgaaatata tcgtagtaat acctatccat aacaaagaag      5040
     caaacactat agccaaggca ttggtagaaa acttcatcct tacattcgga acatttatag      5100
     aattaaaatc agatcaagga ctagaatata acaatgaaat attacacaaa atctcagaaa      5160
     ttttaaaaat caaacaaact tttagcacag cttaccaccc acagacaata ggatcattag      5220
     agagaaatca tagatgtcta aacgaatacc taagaagcta tacaaacgaa catcatgatg      5280
     actgggacga ttggacaaaa ttttacgaat ttgtttacaa tacaacagaa cactcagaca      5340
     caaactacac accatacgaa ctagtatttg gtagaaaagc gaatttacca caagatatat      5400
     ttaaaacaaa aattgaacca gtttataata ttgaccaata ttatttcgaa atgaaatata      5460
     aactccaaaa atcaaacgaa attgccagag aaaatttgat aaaagcaaaa attaaaagac      5520
     agcaaacctt aaataaagat acagtaccac ttattataaa cttaggagat caggtatatt      5580
     tggaaaatga aaataggaaa aaattagatc cagtctacat tggacctttc acagtagtaa      5640
     gtgaccaagg gcctaattgc gtaatacaaa ataatacaac aaagaaaatc tctacagtac      5700
     acaaaaatag attaattaag tacacaggag aataacttca atcattgtaa ttcattacgt      5760
     tattctatta aaggggggag g                                                5781
//
ID   Gypsy11-I_Dpse repbase;    DNA;    INV; 8359 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11_Dpse;
KW   Gypsy11-LTR_Dpse; Gypsy11-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-8359
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1080-1080 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   21706   30064.
XX
CC   Positions [5409-5885] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1432..2778
FT                 /product="Gypsy11-I_Dpse_1p"
FT                 /translation="MGVKWISVRRKNELEMITAELGLDSAGTVEELRRRLA
FT                 TFANSADLPSTARSRLEELEAQYGVAVTPEVKPLSPRPSTLAPLSLQPHPP
FT                 AAYDVVPASSRGIVASGSAVPAESLLHGIDVGAAQRNLHGSKDPPTKGSTW
FT                 NEEHFNAAITEKMVRWGIVFDGSGDPLSFLEHVQERAATYKIDLRHLSQGI
FT                 LVLLTGRAESWFRTSRLSGEPWETFRKEFSEFFLPPRYFQRLEDEIRTHFQ
FT                 RPKEAFKTYLVDIRLMMQRAGYTEAQELERIYDNMLPEYQLFTRRKDFDSL
FT                 SELTQLVVNFEVTRNKGPSELTGYANQARDTHPRETLGPTAGQRGPRNHAA
FT                 ARTQDLRHDRTQVRDWSTDSQQPDVRNGTIFQDADTIIDVQHACRNCGGSG
FT                 HFSRECKQPQVLYCWDCGRRGLRTIECCRRNSSGNGQALHSAGDRAKTDNP
FT                 TPRQ"
FT   CDS           2991..6347
FT                 /product="Gypsy11-I_Dpse_3p"
FT                 /translation="MADIRLGDQQVKMPVLVMKDVLDDVLLGMDFLCGIDA
FT                 TLQCGGVPLRLQFKHSHDTRTQDIGSTARLDQPTNLSRDRAAQHQEPTRND
FT                 VPNEERVADPLGSMMVRWEKLARDDVPNETCVAVPSRNSRNSGEVSTPAGY
FT                 QPGWTSALPGLDHRAMLKNPFRVHEVQQRSKKRVRFEPGIGDNGPRRRRTR
FT                 ERTQGATVATVSISQLPDVLAPGFEPEDDEPLEPRITEWLQQELKQFDGLS
FT                 GVSPIAEHTIVMRDNKPIKQRYYPKNPAMQAVINKQVDELLKEGQIEPSKS
FT                 PHSAPIVLVGKKTGDIRMCIDFRQLNARSIPDAYPLPRIQHILEQLRDARY
FT                 ISTLDLKSGYWQIPLAPTSRECTAFTVPGRGWFHWKVMPFGLHSAGATFQR
FT                 ALDSVIGPDMEPHAFAYLDDIIVIGHTVEDHMRHLGTVLQRLRKANLRLNK
FT                 DKCSFFKRRLKYLGHVISGNGIHTDPDKIAAVRNLKPQAGVKELRRCIGMA
FT                 SWYRRFVPNFSEIVEPMTALLRKDRQWKWSEEQEKAFEELKIRLTEAPVLA
FT                 CPDFSEKFSLQTDASEQGLGAVLTQKIRDEERVIAYASRRLSKAEENYSVT
FT                 EKECLAIVWSIRKLRCYLEGYRFDVITDHLALKWINSIDNPTGRIARWALE
FT                 LQQYQFDIRYRRGKQNVVADALSRQPLELLHQALEEESQCKWIRKMLARIR
FT                 QQPGRYEDYRSESGQLYRRLHTVPEEEDSTPWKLCVAAEHRRRVLKECHDH
FT                 PTAGHLGIRKTSTRVAQKYYWPGLFREVARYVRQCVVCQKYKVSQFKPAGK
FT                 MFTRQVDEPFSVLCADFVGPLPRSKHGNTVLLVFFDAFSKWVELVPLRKAT
FT                 TPHLERSFRERILSRFGTPRTFVCDNGAQFTSRSFKGFCKRLGMELQHTAP
FT                 YTPQQNPTERASRTIKTRVAQYIDGKQNTWDELLPEITLAINSSVSDSTRF
FT                 SPAFLIQGREPRLPGALYDEVTPGTGTSIADPETRARQMREVFEIAKTNCD
FT                 KASEEQKRHYNLRRREWKPAIGSQVMLRRHTLSKAAEGFASKLATKFEGPY
FT                 RVTKFLSPNLVRLQVLNGRKQRSASLNDLKAFYPTIDEDDEKTDQIRTDSE
FT                 DDPDRTNIQQS"
XX
SQ   Sequence 8359 BP; 2187 A; 2465 C; 2254 G; 1453 T; 0 other;
     acgccgcttt cccccccccc cccccctccc taatttctcc cgaaggcccc atcgttgacg        60
     gcggctcggc gatccctgcg ccaacgactc gcctcccccc ccagtctcaa cgtctcagca       120
     acttacaaat aaactgtagg gtgaccctgg gcagactgag actgacccca gcctaggatc       180
     actactttac agatggcgcc cgagcaggga ctgttgagac aattcaaacg atagttttct       240
     gggggggatt tcacccttcg tggcctaaag acccacaagt agatcgcgta ggtagcgccg       300
     catcaaaccg aggagaaatt tatagggtat caataagaaa atacgatacg aaggtacagg       360
     ccagcagcga gcaaagcgtg gctgaaaagc tgtacaatcc ccgttagccg tcggaaaatg       420
     aagaggagag aacgggaaag aggaaatgag agaggaaaac gacagaatga aagtacagcc       480
     cgcagccaag caaagcatag tgatgccctt cccatgtcca gcagaaagag agaaaaaaaa       540
     aaacatccaa gcgaagcacc agcgacgaag cagcacgcaa agcagaacga aaattccgtg       600
     gtccccgtta tactcaggca aaaccatgcg ggatcatggc gcccggtacc gtggggaaag       660
     agccaagggc agccagacct ctgttacatt tcagtgggga gagagggggt gaagaccgga       720
     gaacagttct gggcgtcggc ggcgggcatg tgccgaacga cccacgagta taatacatga       780
     aattatccct tcctcatact acccgcaccc cccgatcttc gactatttac ctaaccattc       840
     gcccgcggct ctctcgcgtg gtgttctcgg ccgattccga gacgtcgacg tcggcagaga       900
     ctcggccgtt cagccagacc caatataagc cgggttgtat acaacgcaag ggagagtcat       960
     cctcagcatt cggtcaaaca tacaacgtgt gaaacagagt gatcccctgc cttcgatcag      1020
     tacacaacgc gcaaaataca gtggtcctta tcccgcagca tacagtggtc ccaatcccgc      1080
     agcatacaac gtgcgaaaga cagcgatccc cgcgtcttct gtccacctcg cgctcccccc      1140
     gaaaccgaac acgaaccaac gcattctaac cggaacaatc ctgcagaaac caacgactaa      1200
     agtacccctg aacaagcgcg tgttaattgc cagcccccgc gtccgggccc acgaccaaga      1260
     cggcccaccg gtaattcacc accgaatagc ctcgcacgcg tcctcgccgt ttaaggattc      1320
     agagccccgt ctttcgccgc gtccttagct acgtttttcg actcctcggg cgacgcccca      1380
     gacatttgat cgtagaccac gtgcagcaac agtgacccgg accaactcaa catgggagtc      1440
     aagtggattt cggtcaggcg caagaacgag ttggagatga ttaccgcgga gcttgggtta      1500
     gacagcgctg gaactgtcga agagttgaga cgtcgactcg cgaccttcgc aaactcggcc      1560
     gatttaccaa gtacggcgcg ttctcggttg gaggaattgg aggcccagta cggagtcgcc      1620
     gtgactccag aggttaaacc actttctccc cgcccttcta cactcgcgcc tcttagccta      1680
     caaccccatc ccccggctgc gtatgatgtc gtacccgcca gtagccgtgg tatcgtggcg      1740
     tcgggatccg ctgtgccggc agagagcctg ctccatggca tcgacgtcgg tgccgctcag      1800
     agaaacctgc acggtagcaa ggacccacca acgaaggggt ccacctggaa cgaagagcat      1860
     tttaacgctg cgatcaccga gaaaatggtc cgctggggaa tcgtgtttga tgggtccggc      1920
     gatccgttaa gtttccttga gcacgtgcaa gagagggcag ccacttataa gatagatcta      1980
     cgacacttat cacaaggaat cctcgtgttg ttgaccggtc gggccgagag ttggtttcga      2040
     acgagccgcc ttagtggaga accatgggag acctttcgca aagagttttc agagtttttt      2100
     ttgcctcccc ggtactttca acggctagag gacgagatcc gaacccattt tcaacgacca      2160
     aaagaagcgt ttaaaacgta cctcgtggac attcgactaa tgatgcagcg cgcgggatac      2220
     accgaggctc aggaattgga aaggatatac gataacatgc tcccggaata ccagttgttt      2280
     acgaggcgaa aagattttga ttctctctcc gaattaacgc aactggttgt gaacttcgag      2340
     gtgacgcgta acaagggacc gtcggagctc acgggctacg cgaaccaagc acgagacacc      2400
     catccgcggg aaactttagg gccaacggct ggtcaacgag gaccaaggaa tcacgcggct      2460
     gcgaggacac aggatctccg gcacgataga acccaggtga gggattggtc gacggactcg      2520
     cagcagccgg atgtcaggaa tggaaccatc ttccaagacg ccgacaccat aatcgacgtg      2580
     cagcatgctt gtaggaactg cggcggatcc ggacactttt ccagggagtg taaacagccc      2640
     caagtcttgt actgctggga ctgcggccgt cgcgggctac gtaccatcga atgctgtcgc      2700
     aggaattcgt cgggaaacgg acaggcgctt cactcggcag gggaccgggc gaagaccgac      2760
     aatcccaccc cgaggcagta aagggaaccc tgcggctgga gagaggacga attcgcgcgc      2820
     aagtaaccat ggaaggagag gacctactcg ctactctgga cacaggcgcc acacggagct      2880
     tcgttagcga acgcaaagcc ctggagctgg acaacggaca gagtatagcg atggtacgaa      2940
     cgacgatcag attggcggat gggtccctcc gggaattgac ttaggcgctg atggcagaca      3000
     tacgactagg agatcaacaa gtaaagatgc cggtgctagt aatgaaagac gtgctggatg      3060
     acgtcctcct cgggatggat ttcctatgcg gaatagacgc gaccctgcag tgtggaggag      3120
     tccccttgcg cctgcaattt aaacacagcc atgataccag gactcaagac ataggatcca      3180
     cagcccgcct ggatcaacct acgaatctca gccgagaccg ggccgcccag catcaagaac      3240
     cgacgaggaa cgacgtgccg aacgaggagc gcgtggccga tcccctggga tccatgatgg      3300
     tgaggtggga aaaacttgcg agggacgacg taccaaacga gacgtgcgtg gccgttcctt      3360
     caaggaattc taggaattcg ggcgaggtct cgaccccggc aggataccaa cccggatgga      3420
     catcggcgct ccccggcctc gaccacagag ccatgctgaa aaaccccttc cgggtacacg      3480
     aggtacagca gcgatccaag aaacgagtgc gattcgagcc cggcatcggc gacaacgggc      3540
     cccgccgtag gcgcaccagg gaacggacac agggagcaac agtggccacc gtgagtatat      3600
     cccaattgcc cgacgttttg gccccgggat tcgagcccga agacgacgaa cccctggaac      3660
     cccggatcac cgaatggttg caacaggaac tgaaacaatt cgacggcctc agcggagtgt      3720
     cccccattgc agaacacacc atcgtgatgc gcgacaacaa gcctataaaa caacgttatt      3780
     atccaaaaaa ccccgctatg caagccgtca ttaataaaca ggtcgacgaa ctgcttaagg      3840
     aagggcagat tgaaccttcg aagagtccac atagcgcccc aattgtcctc gtgggcaaga      3900
     aaacaggtga catcaggatg tgcatagact tccgacagtt gaacgcgcga tcgatccccg      3960
     acgcgtatcc cctccccagg attcaacaca tattggaaca gctgagagat gccaggtaca      4020
     tatcgaccct ggacctgaag agcggctact ggcaaattcc gcttgcccca accagccgcg      4080
     agtgcacggc gttcaccgtg ccgggccgcg gatggtttca ctggaaagtg atgccttttg      4140
     gccttcactc cgccggcgcg accttccagc gagcactgga tagcgtgatt ggccccgaca      4200
     tggaaccaca cgcattcgcc tatcttgatg acattatcgt catcgggcac accgtggagg      4260
     accacatgcg gcatcttggg acagttctac agcggctgcg caaggctaat cttcgactca      4320
     acaaggacaa atgcagcttc ttcaaacgca gactgaagta tttaggacac gtcatcagcg      4380
     ggaacggcat acacacggat cctgacaaga tcgccgcagt gcgcaacctg aaaccccagg      4440
     caggtgtcaa ggaacttcgc cgatgcatcg gtatggcctc ctggtaccgg cggtttgtac      4500
     ccaacttttc cgaaatagta gaacccatga cggcgttgtt aaggaaagat cggcaatgga      4560
     aatggtcgga agaacaggag aaagccttcg aggagttgaa gatcaggtta actgaagcgc      4620
     cggtcctcgc ctgccctgat ttttctgaaa aattctcatt gcaaaccgac gctagcgaac      4680
     aaggattagg agccgtcctt acacaaaaga taagggacga ggaacgagta atagcctacg      4740
     cgagtcgacg cttgtccaaa gccgaggaga actactccgt tactgagaag gaatgcttgg      4800
     caatagtgtg gtcaatccgc aagctgcgct gttacttgga aggataccga tttgacgtga      4860
     tcacggacca tctcgccctc aaatggatca actcgatcga caaccccact ggacggatag      4920
     cacgttgggc tttggagctg cagcaatatc aattcgatat tcgctatcgc cgagggaagc      4980
     agaacgtggt agcagatgca ctttcccgcc aaccattgga gttactacat caagctctgg      5040
     aggaggagtc acagtgcaag tggatcagga aaatgttggc gagaatcagg cagcagccgg      5100
     gcagatatga agactaccga agcgagagtg gacaactgta tcggcgcctg cacaccgtgc      5160
     ccgaagaaga agactccacc ccatggaaac tctgcgtcgc tgcagaacat agacgacgcg      5220
     tactaaaaga atgccatgac cacccgacgg ccggacatct aggaatccga aaaacaagca      5280
     cacgagtcgc ccaaaagtac tactggccag gcctgttccg agaagtcgcc agatacgttc      5340
     gccaatgcgt agtgtgccaa aaatacaagg tgagccagtt caaaccggcg gggaaaatgt      5400
     tcaccagaca agttgacgaa cccttcagcg tgttatgcgc cgactttgtt gggccgttgc      5460
     cccgctccaa acatggaaac accgtcctcc tggttttctt cgacgcattt agtaagtggg      5520
     tcgaactggt gcctctacgc aaggcaacta cgccacacct ggaaagatca ttccgagaaa      5580
     gaatcctaag ccgctttggt acccctcgta ccttcgtttg cgacaatggg gcacagttta      5640
     ccagccgatc gttcaaagga ttctgcaaaa ggctagggat ggaacttcag catactgccc      5700
     cgtacactcc ccaacaaaat ccaacagaac gcgcgagcag aacaattaaa acgagggtgg      5760
     cgcaatacat cgacggaaaa cagaacactt gggacgagct cttgccagaa atcacgctcg      5820
     cgatcaactc aagcgtgtcc gattcgacgc gattcagccc cgcgtttttg atccaaggtc      5880
     gcgagccaag actgccaggc gccttgtacg acgaggttac gccaggaacg ggaactagca      5940
     tcgccgaccc ggagaccagg gcacgacaga tgagagaggt gttcgaaatc gcaaaaacaa      6000
     actgcgacaa agcatcagaa gagcaaaaac gacattacaa cctccgccgt agggaatgga      6060
     aaccggctat tggatcccaa gtgatgttac gtcgccacac tctgtccaaa gcagccgaag      6120
     gcttcgcctc caagttggcc acgaaattcg agggaccata ccgggtgacc aagtttctct      6180
     ctccgaatct cgtccgatta caggttctaa acggacgtaa gcagcgatca gccagtttga      6240
     acgacctgaa ggcgttctac ccgaccatcg acgaagatga cgaaaagacc gaccagatca      6300
     ggacggacag tgaagacgac cctgaccgaa ccaatataca acaatcttga ttacaacgca      6360
     gatctactca aaccgccacg acgatgctga caccccggat acacagagac gaaaccaatc      6420
     aggaacccgg atatcttgcg aggaacgacg caccgaacga ggcgtgcgtg gctgctcctc      6480
     ctggacacat ccgcttcggg aacccggata tcttgcgagg aacgacgcac cgaacgaggc      6540
     gtgcgtggct gctcctcctg gacacatccg cttcaggaac ccggatatct tgcgaggaac      6600
     gacgcaccga acgaggcgtg cgtggctgcc cctcctggac acagccgctt caggaacccg      6660
     gatatcctgc gaggaacgac gcaccgaacg aggcgtgcgt ggctgcttct cctggaccca      6720
     tccgcttcag gaacccggat atcttgcgag gaacgacgca ccgaacgagg cgtgcgtggc      6780
     tgcccctcct ggacacagcc gcttcaggaa cccggatatc ctgcgaggaa cgacgcaccg      6840
     aacgaggcgt gcgtggctgc ttctcctgga cccatccgct tcaggaaccc ggatatcctg      6900
     cgaggaacga cgcaccgaac gaggcgtgcg tggccgcttc tcctggacac atccgcttcc      6960
     gggacccgga catccttcga agaacgacgc accaaacgaa gcgggcgtgg ctgttccttc      7020
     aagggcaaac cgcaaccgtg attgtaccga agggaccaac caaggccgac attttggaga      7080
     ttctcattaa gtctataacc gctccgccgc actcatagag tatcaaagta tttcttgcct      7140
     gtagtcaacc agtccattcc tattcacagc tcatcgaatg cgagagaccc ccgccgacgg      7200
     agaactacga caaaagccag gccggagccc ccagtcgact gggagatcat cgaggaactg      7260
     attcttcgcc ccactccgcg agaatgccaa gtccacccag aggtcctcag ctgggaaaat      7320
     ttatgcggcg acgtcgtaag ctggccccgc atcgaccaga tcatcgaggg gcacgattca      7380
     gaccccgatc acgtcaatat tacaggagac gtggcccaga cgtacaggga cccaagccct      7440
     ggcaacgccg ccagagccac gttcacccac gctcagggcc ccagccaggt caaccccgac      7500
     caggtcgccg aagagcacgc gcagggccct ggacacgcca ccgtaggaga agcagccgac      7560
     ttcaccgctc cgggtccgaa ccccgacgag ggggcagagg ccatcactat ccctgacggg      7620
     ctgccaggtg ccaccgcacg cggataccgc cagcaattcg agccgacgga gttcgaaaaa      7680
     gaggtgctcc gctgggaaga gccaccgctt ccggcactct tcggggccct tgatacgctc      7740
     aaccttctcg aacggataga cgggttggac atcgccccgg aagatgcagg actaccggcc      7800
     gtcagcaact ttgacgccat cctgcgtccc gaagacatcg acctcgaaga tgcaggacta      7860
     ccggccgtca gcaactttga cgccatcctg cgtcccgaag acatcgcccc cgaagatgca      7920
     ggactaccgg ccgtcagcaa ctttgacgcc atcctgcgtc ccgaagacat cgcccccgaa      7980
     gatgcaggac taccggccgt cagcaacttt gacgccatcc tgcgtcccga agacatcgcc      8040
     accgaagacg cagagctacc ggccgtccgc gatctggacg ccatcctacg tatcgacggc      8100
     ggccgtccgg agataccaga aacgtcgacc cccaacccag ccgttcgttg ggtgactggg      8160
     gaggcggatt ggagagtacg tacgcccgac ggccggctgc cagacaccct gaaagcccgg      8220
     ctcctggcac aactcgtcaa cccgcggcgt aaagatgtcc gattcttggc agaggcggac      8280
     aacaccttct tccaggtcca catcagcaag acgagcaaag tgactattcg ctcacgggcc      8340
     ccccgaagta aggagaggg                                                   8359
//
ID   Gypsy11-I_Dya repbase;    DNA;    INV; 6126 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11_Dya;
KW   Gypsy11-LTR_Dya; Gypsy11-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6126
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1081-1081 (2009).
XX
DR   Genome; chr3R; Positions  740758  734633.
XX
CC   Positions [4043-4318] - Integrase core
CC   LTRs are 91% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2195..3787
FT                 /product="Gypsy11-I_Dya_1p"
FT                 /translation="MILKRKQVFSHSNEALPFNTSIIATIRTETNEPVYSK
FT                 LYPYLMGAADFVNTEIKQLLKDGIIRPSRSPFNSPTWVVDKKGTDADGNKK
FT                 KRLVIDFRKLNERTIADRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYL
FT                 AEKDREKTAFSINGGKYEFCRLPFGLKNAGSIFQRAIDDVLREKIGKICYV
FT                 YVDDVIIFSEIEADHVIHIDTVLKCLCQANMVAIEFDDTQRRAFERLRDIL
FT                 SSEDVILTYPDFKIPFDLTTDASANGIGAVLSQKGRPITMISRTLKDCEVN
FT                 YATNERELLAIVWAIGKLQNYLYGTREIRIFTAHQPLTFAVSERNTNAKIK
FT                 RWKAFIEEHIAKVFYKPGKESFVADALSRQKVNALESEPHSDAATVHSELS
FT                 LTYTIETTDKPLNCYRNQIILEEAAQPSRRHFIVFGNKNRHIINFDKKDSL
FT                 LLSIKEVVNVSVVNAIYCNLPTLACIQHALVTEFPATKFWHCKNFVNDITD
FT                 ANEQKEIIKCEHNRAHRAAQENVKQVLQDYCFPNM"
FT   CDS           5024..6127
FT                 /product="Gypsy11-I_Dya_2p"
FT                 /translation="MLKMSESRLIESNNRQVVINTQTQEKINEQTEAVNKI
FT                 ILAKKNNMVDTPHLYEVLLARNRILITEIQNVMLTVTLAKANIINPAILNH
FT                 NDLKSVLIDHPTEIPVISLIEASNIKVLQSDSVIHVIITYPIIKATCKKVT
FT                 IFPVSHQHTILQLTDNIVAECNNDVLAVTECVPTTYASYCKLATHDTCARG
FT                 LHAGSTALCKTQPSNLSLITLVDDGVIITNECIAKVSTDDGPEIDTNGSHL
FT                 IMFERVAFINGTKYANRREAIRKVPGMAASPLLNIIGHDPRLSIPLLQRIN
FT                 NENLEVIQGLKEEVESAGTTDIWFAVGVGISVFICCSILLTLVLRRRRDTI
FT                 EIQQVIAKFQMTEDGHIPEGGVVNT"
XX
SQ   Sequence 6126 BP; 2011 A; 1381 C; 1263 G; 1461 T; 10 other;
     taattggcac ccaactgaat aagaattcac gacccccaaa aatttaagtg ggctgatcat        60
     atttaataca gcttcaagta cacagggaaa aaataaacaa aaatccctac aaattattta       120
     ccaaaaattt taatattaaa aatttttttg ataaagtgtg actgtaaatg tgactcacaa       180
     ataaaggcaa atttatatca gccgtctcta aatgcacatt ttcagacacc aagcacccgg       240
     ttattaatat aaatatacca tatccaaatt aatttctgtc gaattagaat attcggcctc       300
     tatacaactt gtgtttagtg ttaaccagtt aagggcttga tgagttttcc aggcccatat       360
     agggaaaata aacgcgaatt agaaagtgat agtgaagaag agcttgtccg agagacccgc       420
     agattgcaac tagcacaggc agagaaaaac acatacacca tgaacgcgtc ccaagttgaa       480
     gcgttagttc aggccgcgtt gtataatcaa gaacagaggc ttaaagccga atttacagag       540
     caattaaatg ccgttaatca acagctaaaa aattagcgtg tagaagcgcc ggaggtaaaa       600
     acctaccaga gggtagctgt aaaaccggga gcaacaccgt gtgatacacc tttacacatt       660
     gtgaagtcaa ttccagattt atgggtatac aggatgaata cctggatgga ggctatcggc       720
     ccccgatgct tttnnnnnnn nnncgggagc acaccgtgtg atacaccttt acacattgtg       780
     aagtcaattc cagattttac tggtatacag gatgaatacg tggcatggag gcaatcggcc       840
     accgatgctt ttgaattgtt caaagattat ccagacagta gtggacactt ccaagctgtt       900
     actataatta gaaacaaaat taaagggcca gcgcgcgcgc tgctagtttc atataacaca       960
     gtgcttaatt ttaacgccat tttggctaga ctggactgct cctatgcaga caagacatcc      1020
     ttgcgacttt tacgacaggg tcttgagtcg gtccgtcagg gtgaccaaac cctaatgcag      1080
     tactacgatg aggtcgaagg aaaattgacc ctcgtcacta acaaaattgt catgacatat      1140
     gacgatgaaa gagccacctt gcttaataca gaggtaaggg ctgatgccct actcgtattt      1200
     atatcgggtc taaaaaaatc ccttagggct gttgtatttc cagcacagcc caaagacctg      1260
     ccagcagcac tggcattagc aagagaagca gaggccagta tcgaacgaag tatgttcgcg      1320
     gccacatacg ccaaggcgtt ggagcagaga actcaaaata ctgacttcca caagagccaa      1380
     caccgcgcgc ctgaaaaata aggcaaaaat tttggtgccg accgcggccc agaaaaaaac      1440
     cctcattttt ttaaaaagcc aagcaagaat caaaataccg attcatggcg caagcaagag      1500
     aactgggtat ccgatctacc caaacagatt caatccccag agccaatgga catagatcta      1560
     tcgtcttcaa agattaggca ttccactaac tttagaaagg gaagcgataa acatgcccct      1620
     aaaggacaaa actcttctga gagaatgtct ggtcaagggc gccagagggt tttcaagatt      1680
     gaacaagacg ctaacgcggg ggaagatgag gattatgaaa acgcggctgc agccgctttt      1740
     aatgcaagag cgaaagtgga ctcattggag tccaatgacc tcattaattt tttagaggaa      1800
     ggtcccgctt gcctttcatt gaaagaaggc tgtcggggag agttttaaga atactcatag      1860
     atattggagc ggcaaaaagt tatgtaaggc ccctaaagga gctgaaaaac acaacacttg      1920
     tcgactcccc attcactgag agttccattc atggctccag taaagtgaaa aaaaactgcc      1980
     taatgcacat atttgcccta acggccccat tctttttggt tgaataggtt tcgacttgct      2040
     aacgcaggcc ggagcggcat tagacctacg caacggcgca ataaggtacg gaaacgtatc      2100
     tgaaaagcta cagttccaca actgtgaaac tgtgaacttc acaaacatcg atgacattga      2160
     agtcccaaat tcagtgaaaa ctgaatttaa aaaaatgatc cttaagagga aacaagtgtt      2220
     ttcgcactct aacgaggcgc ttccatttaa cacctcgatc attgctacaa ttcgtacgga      2280
     gactaacgaa cccgtatact ccaagctata tccttatctc atgggagcag cggattttgt      2340
     taacaccgaa atcaaacagc tgttaaagga tggcattatt cggccttcta ggtcgccatt      2400
     caacagccca acatgggttg ttgacaaaaa agggaccgat gccgacggca acaaaaaaaa      2460
     acggctggtg atcgatttca ggaaactgaa tgaacgaacc attgccgacc ggtaccctat      2520
     gccaagtatt cctatgattc tagcgaactt aggaaaggcc aaatttttta ctaccctaga      2580
     cttaaaatcg gggtaccacc agatttatct ggctgaaaag gaccgcgaaa aaactgcctt      2640
     ctccataaat ggaggaaagt atgaattttg ccgtctaccc tttggactaa agaatgcagg      2700
     aagcatcttc caaagggcga ttgacgacgt gctccgcgaa aaaatcggga aaatctgtta      2760
     cgtctatgta gacgatgtga taatcttctc cgaaattgag gcagaccacg tcatacacat      2820
     tgacacagtt cttaaatgcc tgtgtcaagc caacatggtc gctattgaat ttgatgatac      2880
     ccaacgcaga gcgtttgagc gccttcgaga cattctgtca tctgaagatg ttatacttac      2940
     atacccagac tttaaaatcc ctttcgattt gactaccgat gcctcagcaa acggtatcgg      3000
     tgcggtacta tcccaaaagg gcagaccaat aacaatgata tctcgcacat taaaagactg      3060
     cgaggttaat tacgcaacaa acgaaaggga gctactagca attgtatggg ctattgggaa      3120
     attgcaaaat tacctatatg gtactagaga gatccgaatt tttacggccc atcagcctct      3180
     cacattcgcc gtgtccgagc ggaatacaaa cgctaaaata aaacgatgga aagcattcat      3240
     cgaagaacac atcgccaaag tgttctataa acctggaaag gaaagttttg tggccgacgc      3300
     tttgtcccgt cagaaagtta atgctttgga aagtgaaccc cactctgacg cagccacagt      3360
     acacagtgaa ctgtcactga cctacacgat cgaaactacc gataaaccct tgaactgcta      3420
     caggaatcaa ataatcctgg aagaagcagc ccagccctca cggcgacatt ttattgtttt      3480
     cggtaacaaa aaccgacaca ttatcaactt tgataaaaaa gactcactgc ttctatcgat      3540
     taaagaggtt gtaaacgtaa gtgttgttaa cgctatttac tgcaacctcc ccacactagc      3600
     atgcatccag catgccttgg ttacggaatt cccagcaacc aagttttggc attgcaaaaa      3660
     cttcgtaaat gatattactg atgctaacga gcagaaggaa attattaaat gcgagcacaa      3720
     ccgcgcccac agggctgccc aggaaaatgt taagcaagtc cttcaggact actgttttcc      3780
     aaatatgtaa aaacttgcca atgaggtggt tataaattgt agaacatgca ccaaggctaa      3840
     gtacaacagg caccccaagg agcaagaatt gggtgtcacc ccaattccct catatgcggg      3900
     tgaaagctac atatggacat ctattccacg gttaaaaaaa tttttttaac ctgtgtggat      3960
     aagttctcaa agttcgccat agtacagcca ttagcctcta gggccattat cgacgtacgc      4020
     agccccatac tacaattggt aaattttttc ccaaatacca aaacaatata ctgcgataac      4080
     gaggcttctg aaaaaccaat atgacattga catcgttaat gcaccccctt tacatagcag      4140
     ctccaacggg caagtggagc gattccacag caccctaacg gaaatagcta ggtgcattaa      4200
     aattgacaaa aaagttgacg agacggtcga gctcatcatg agagccacgg tagagtataa      4260
     caaaacgtta cactcagtca caaagttgca gcctaaagac gccttgcatt ctgccaacga      4320
     cgctcagaga ctggcaataa aaaccagtat cataagagcg caacaggcta acctagatag      4380
     gtataaccct actaggcaaa accgaatttt tgaggtaggt gaaaaggttt acctcaaaaa      4440
     caacaaaagg ctagggaata agctaaccgc actctacaca gaagagcgtg tagaagcaga      4500
     catgggaacg tctgtcctca ttagagggag ggtggtccat aaggacaacc ttagataaaa      4560
     atccctctcg aatttacatc ttccacaatt tttatacctt tattcatgca ccttgtattt      4620
     aagcgtactt atccttttat tagatgcaca ttcgattcaa tcttccgctt tcttacagga      4680
     tcgccggaat catattaatt acgttaacta tagttaacgc taggattacc aattactctc      4740
     atgctaatta catccccata acagatggtg ttgcactggt gtgggagaag agaaactggc      4800
     ttaggcattc tactaacctg tccgaattcg aaatgatgat agaagagact agtaggttgt      4860
     ccgagctatt accagagtcg catatgcaaa attactagat accgaccatc tcagaagttt      4920
     actggccgta ttgaaagtac atcataggat tgccagaagc ctaaactttc taggcatagc      4980
     actgaaagta atagcgggca ccccagatgc cgccgatttt gaaatgttaa aaatgtccga      5040
     atctcgatta atagaatcaa acaatagaca ggtggtcatt aatacacaga cccaggaaaa      5100
     aattaacgaa caaacagaag cagttaataa aatcattcta gcgaaaaaaa ataatatggt      5160
     tgacactcct cacttgtacg aggtactctt ggcaagaaac agaatattaa ttaccgaaat      5220
     ccaaaatgta atgcttaccg tcacactggc taaagccaat atcataaacc cggccattct      5280
     taaccataac gatttgaagt ctgtattaat tgatcaccct acagaaatcc ccgtaataag      5340
     cctaatagag gcatctaaca ttaaagtcct tcagtccgac agtgttatcc atgtgataat      5400
     tacatacccc atcattaaag ccacttgtaa aaaggtcacc attttcccgg tatcccacca      5460
     acacaccatt ttgcaactaa cggacaacat agtagcggaa tgcaacaacg acgtcctggc      5520
     agtcaccgaa tgcgtaccaa caacttacgc atcgtactgc aagctggcta cccatgatac      5580
     ctgcgctcga ggtctgcatg cggggagcac tgcattatgc aaaacgcagc ccagcaatct      5640
     tagtctaatc acattggtag atgacggcgt aataataacc aacgagtgca tagctaaagt      5700
     cagcaccgac gatggccccg aaatagatac caacggctca catctaatta tgttcgagcg      5760
     agtggctttc atcaacggca ccaaatatgc caaccgacgt gaagccataa ggaaagtacc      5820
     gggcatggct gcatccccat tgctaaacat catcggccac gatcccaggc taagcatacc      5880
     gcttctccaa aggatcaaca acgaaaactt ggaggttatc caaggcctta aggaggaggt      5940
     ggaatcggct ggaactacag acatttggtt tgcggtcggc gtgggaatca gcgtcttcat      6000
     ttgctgctct atcctgctca ctctggtgct gaggaggaga cgagatacga ttgaaataca      6060
     acaagtcatt gccaagtttc agatgaccga ggacgggcat attcctgagg ggggagtagt      6120
     taacac                                                                 6126
//
ID   GYPSY11-LTR_AG repbase;    DNA;    INV; 811 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY11-LTR_AG is an LTR of retrotransposon GYPSY11_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY11_AG; GYPSY11-I_AG; GYPSY11-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-811
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY11_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 165-165 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY11-LTR_AG is a long terminal repeat of GYPSY11_AG (its
CC   internal
CC   portion is deposited as GYPSY11-I_AG).
XX
SQ   Sequence 811 BP; 319 A; 192 C; 123 G; 177 T; 0 other;
     tgtagcatgc acatgcacat gctatactgt tttcaatcag ttcacacaca tttcttatta        60
     cacttaataa acacaaaatt gtcaacacaa cacaacacac aaaaagacca aattccaacc       120
     actcaagata ccaacacaac ccaaaccaca taaataacct tacgtcagga attgtaagtc       180
     agcagaaaaa cccttatcca aaaacactta aaacacacaa gcgacacaca accccggagg       240
     tgcgaaaaaa tcttacccag cacaaaacgc ttcaagtggg taaagcgtaa aaacacagca       300
     ttgcataata gcaaccaaca gttaataaat aatgaaatag gagacaccgt acctcgtgtg       360
     tacaaacaga accgtaagcg taggaaacaa aacaccgcgt aagcgtcaga accaagaact       420
     gaccttacat aataagcaca accatatgta aactcaaaac ttgacattca gcataattga       480
     cacaaaatag aaagtaaagt aaaaccaaat ctaactaaaa ggaaatgaat cgtataaata       540
     aagatgtaag atgagaccga gtgctgctca gttacacaca gtacgcacag tgacacggtt       600
     cagtggagcc gttcaagtct tatcgtaatt cgcacaaaca acacaaatat gttaaattaa       660
     ttcattgtgt ccactcgtta cctggagccc tgatggctcc cagtgatcat ccgaaactaa       720
     tgctttgttt ttgacgaatt gacctcgcga gtgatgttta atccttctgc accgctgctc       780
     taacaattgc aacctgatac agaatattac a                                      811
//
ID   Gypsy11-LTR_Dpse repbase;    DNA;    INV; 817 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11_Dpse;
KW   Gypsy11-I_Dpse; Gypsy11-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-817
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1082-1082 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   20889   21705.
XX
SQ   Sequence 817 BP; 209 A; 217 C; 235 G; 156 T; 0 other;
     tgtgaggacc catactggga ccctcacata gtaacaagaa taataataat aatattaata        60
     attggattac tcacaaccat atgctatagt agtaaataag ctagttatgt tttgcatagc       120
     cgaaatcccg ccaaacggcc agctcacacg gaacaaccgc aaagaagacg gcgaggagag       180
     agagccatgc tcagccggca gcagagcgga tctctttcgg aaaagtcccg ttggcccgaa       240
     aacgagcgcg aggcgtggcg agaacgtcga gcgaccgtag cgagagaggg agtcgattct       300
     gggaagtgag cgaagacgga acgtcgcgga catcgaagtg aagagaaaaa aaaagtgttg       360
     aacggccgcg cgccagagag gagagaaaag catggaggag ctgcgggaac acaggcgcgg       420
     gatccgcggg tgagctggcc gctggccaag gtagtagtag gagtaggagg gagtgcgagg       480
     ggaaccaatc caataaaact tcgatcatag aattaagaac gcgttggctt ccatttattt       540
     tctctggtcg gaccaccgac tgcggtcatc tctccacccc ctccccaccc gttttcctga       600
     ctgttctcgg tcactacgct cccgctctga ctctggcaac agggttttac cctgctggag       660
     tgagaagtgg tacgcgtttc gacagaggcg cccccccctc atccttttcc ttcacctccc       720
     cggacccgcg gcccacttcg accttggcaa caggggtttt accctgctga agtcggggag       780
     tgcagcgtct cgggtgagtt tcgcgccgcc cggccca                                817
//
ID   Gypsy11-LTR_Dya repbase;    DNA;    INV; 514 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11_Dya;
KW   Gypsy11-I_Dya; Gypsy11-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-514
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1083-1083 (2009).
XX
DR   Genome; chr3R; Positions  734632  734119.
XX
SQ   Sequence 514 BP; 146 A; 122 C; 119 G; 127 T; 0 other;
     tgttaatgag tagatttaag tcgatataag ttcggggctg ttaccctata ttttatatgc        60
     aaattcagca taaactctgg ggagatatgc tgtttttgct agtgtcagca ctttgctgga       120
     cgagcggtcg gcttgccgac cgcgaatagc ttctgtaaaa tagaataagt tttcagtttg       180
     atttgtataa caataaagag cagttgctca taaatcctac tccagctaaa gctgcattta       240
     ttgaattggt tatctagcct taagggcagg taataacgga gatagttctc ccatcgtaaa       300
     ctgatcacaa tcaggaacgg cgctgagcaa aggccagcga accaccccca cctagctgag       360
     gagacgacta cgttgacgat tacgtcatcc ccggaggaga agatctccag cacatacagc       420
     cctagcagag cagccgatcg catcggcgct gaagtactca acccctttcc ccttggaccg       480
     cggcgcggga taacctaggg ctacaccaaa aaca                                   514
//
ID   Gypsy11-NVi_I repbase;    DNA;    INV; 5478 BP.
XX
AC   AAZX01023279;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11-NV;
KW   Gypsy11-NVi_LTR; internal portion; Gypsy11-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5478
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1144-1144 (2007).
XX
DR   Genome; AAZX01023279; Positions   25260   19783.
XX
CC   Positions [2876-3331] - Reverse transcriptase
CC   Positions [4256-4768] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           865..2196
FT                 /product="Gypsy11-NV_I_1p"
FT                 /translation="MSASGHSASNSQSPSKTRSGTIFGSNMPLVHSDSEDE
FT                 PLGTGSGKDNPSLGQPISDAQAFLEATLSSLQLELPNLIKGAVAPLQTQID
FT                 QLSDRLRLQTSLASGVENDRASALSTSNQAFSLNPTAPSFSASARVPVSSA
FT                 SLSLDNFKSNPIHTDTQTTMNQPATNAPGSLVPADLIPTHTDASRPHSDAF
FT                 LAQKINPGPFWTHNPEGWFVGLEINFEVLNITDDKLKFATLWRSLSRDVAL
FT                 RIDSTIRNLPLESRYEVVKQALLKEFSDTVEQRLDKLFERSALGSKKPSDL
FT                 LKEMYIHAGPNIDKDGVRSYWRKLLPKDVQFAIASLTDLPDDKLFELADRI
FT                 HHIHNSVPDQRLNAVETDRSISSVDLQDLNKRLASLEKSLRESRNSSRSNN
FT                 NSNRSRSKSRNTKSRKSASGLCFAHSKYPDNPTSCRDWCSKNAEWKAKNQ"
FT   CDS           2852..5203
FT                 /product="Gypsy11-NV_I_2p"
FT                 /translation="MAQKKDGSPRPCGDYTGLNAITIPDKYPTSHLYDCNN
FT                 NLHGKKIFSALDLHKAFNQIPIAPEDIEKTAIITPFGLFEFLFMPFGLRNA
FT                 SQTFQSYINRALGDLDFVYIYIDDILIASDSREQHQKHLRTVFERLKKFHL
FT                 RLNVDKSVFMVEELEFLGYLINSQGIRPTRAKIDAVLNFPKPRTIVELRRF
FT                 LRMVNFYHRNLPHAATSQAPLNAFFRDSRKNDKRLIQWTPEADEAFEKVRS
FT                 EFAEAALLVHPRSSPSQQRYSAYDRELTAVYEAIKYFAHIVEGCDFSVLTD
FT                 HKPLIYAFLQKTDKAPPRRVRQLNYISQFTTRIEHVRGIDNTVADSLSRIE
FT                 SVRFPLEFDLEELAAAQEADKQLQEIRESPEHSLSLKRIQFGPNHTTICCD
FT                 LTGETLRPFVPVSMRESVFAFFHKPAHPGPKVTDRLIRQRYVWPAMHRDIA
FT                 NWCKLCLDCQQSKISRHVKLTPSQFVAPDGRFDHVHIDIVGPLPIKDGLQY
FT                 VLTMIDRFSRWIEAVPLPETSAQTVARAFFDTWVARYGAPKVITSDQGSQF
FT                 ESQLFSALLSLIGCERIRTTAYHPAANGMIERWHRCMKAAIMCHNDTDWPR
FT                 TLSTVLLGLRCHLRADTNASPAEFMFGTTLRLPGEFFIPEDQTPDPNFFLE
FT                 EYREYMRQIRPIPVAHNYKKRAFYFKDLYKCTHVFMRNMAKKSLERPYSGP
FT                 FKIVKRVSDRVFDIDVNGTTKSVTVELLKPAYYIPDDLGELVPSDSTNGNQ
FT                 PLSNPSDKPSCNPSNTSRPALKTYARKKVSFAS"
XX
SQ   Sequence 5478 BP; 1349 A; 1457 C; 1196 G; 1476 T; 0 other;
     gcctgtccag gcgaccgcct ttcggcgcag cagcagtatc atcagcagct ctcaacgcag        60
     cagcgtcatc ggcagcgggg cggcccggca acctggacat cgtctccgcg gcagttcttc       120
     accacctgga cgtcgtcacc ggagcctcta ggtctgcccc gctctcctca tcgcatcatc       180
     gagcgcccca ggtatttcgc gggaatttct cgagtgcgcg tcaagcataa aaaaagcgcg       240
     cgtcaattag taaaaagcgt gcggcggttc gtaggaaagc gcaccaacgg aattcgtttc       300
     cgagaattcg gcggccatct tgccatgacg caattgtttc gttctctcag cgcgcgcgtt       360
     tttctggctc agtagtgcca accttagctt cgcgcatcga tttacaacta gctagcgcgt       420
     ttcggtgatt cattgatgcc aaccttgatt cggtataacc agccagcacg ttttcgtggt       480
     tcagtgatgc caaccttcgc ttcgcgcagt agttcgcgag caactagtgt tcttatggct       540
     cattgatgcc aacttcagct tcgcacgata gttcgcgact agctagcgcg cttattcaaa       600
     ttttcttttc ttttctttca tacacgtact ctgcacgagg tatgcgtaat tttttattgt       660
     ttgtatacag tgcctgcgtg cacacttgcg ctagtcacac tgtaaacctc gtagcagaaa       720
     tctagttagt agcgtttagt tttatgtccc tgcgtatgcg tgcggctcaa gatccgtata       780
     caattagtag cgtttatatt gtgaggtgcc tgcgtgcacc caataggcaa ttttgtcaat       840
     cttgagcagc ttttcccagc gttcatgagc gccagcgggc actctgcgag caacagccag       900
     tctcctagta agacccgatc gggcacaatt ttcggctcca acatgccttt agtacacagt       960
     gattctgagg atgaacccct gggcacgggg tctggcaagg acaatccttc cttgggccaa      1020
     ccaatctctg atgctcaggc ttttttagaa gctacgctaa gcagtcttca gctcgagctt      1080
     cccaatttga ttaagggagc agttgctcca ttgcagactc agatcgacca gctgtcggat      1140
     aggcttcgtt tacaaacttc tctcgcttcc ggtgtagaaa atgacagagc ctctgctctc      1200
     agcacttcaa accaagcgtt ttctctcaat ccgactgctc cttctttttc ggcatcagct      1260
     agagttcctg tttccagtgc atcattgtct ctcgataatt ttaagagtaa tccgattcac      1320
     acggatactc aaaccactat gaaccaacct gcaaccaatg ctcctggcag cttggtccct      1380
     gcagatttga ttccaacaca cacggacgct tctcgtcctc actcagacgc ctttctggct      1440
     cagaaaatca atccaggtcc tttctggact cacaatccag aaggctggtt cgttggtctc      1500
     gaaatcaact tcgaggttct caacatcact gatgacaagc ttaaattcgc cactctctgg      1560
     cgcagcttga gcagagatgt tgcccttaga atagacagca ccattcgtaa ccttcccctt      1620
     gaaagcaggt acgaggtagt caaacaagct ctgctaaagg agttttccga tactgttgaa      1680
     cagcgtcttg acaaactttt cgagagaagc gctctaggta gcaagaagcc ctctgatctt      1740
     cttaaagaga tgtacattca cgccggtcct aacatcgata aggacggtgt gcgtagctat      1800
     tggaggaaac ttctccccaa ggacgtgcag tttgcgattg cgtcgttaac ggatcttcct      1860
     gacgacaagt tattcgagct tgcggacagg attcatcaca ttcataactc cgtcccagat      1920
     caacgtctca atgcggtaga gacggataga tctatttctt cagtcgacct tcaggatctc      1980
     aacaagcgtc tagctagctt agagaaatct ctacgcgaat ctcgcaactc ttctcgctct      2040
     aataataact ccaacagatc taggagcaag agccgtaaca ctaagtcccg caagagtgct      2100
     tcagggttgt gttttgcgca ctctaaatat ccagacaatc ctacctcctg cagggattgg      2160
     tgtagtaaga acgcagaatg gaaagcaaaa aaccagtaag acctgcggac ttggaggccg      2220
     tctgtcaagg tcattcctct aagcgtctcc acatccaaga ccttatttca ggtcaattct      2280
     ttctaatcga tacaggagca gacatctctc tgcttcctgc tgtaaataat attagttgta      2340
     agcccgatag tcttaagtta tctgcggcca atggcaccaa aattaatacg tatggcgaat      2400
     cttatcgcac gctagatctc ggtcttcgcc gtccatttgc gtggaatttc tgtatcgccg      2460
     aggttccgtc cgctataatt ggtgctgact ttctgtcaca ccatagtctc acagtcgacc      2520
     tggctagccg gcgactggtt gacacccaga cgaacatttc ttcggctgcg actctcagag      2580
     cagcacccct cgttgctatc tctactatct cgcctaatag cgaacatgct cagctgctag      2640
     cggagtttca gagatcactg gtcccgctag agctggtctc agtggcaaag ctgatgtgta      2700
     tcatcacatc tacacctcgg gtcctcccgt ctctcaacgc ccgcgtcggc ttcatcccga      2760
     caagctcaga gccgctaagg ccgagttccg tgcgtggcaa gaagcaggta tctgcagacc      2820
     cggtagcggt ccctgggcca gccctttgca catggcgcaa aaaaaggatg gttcacccag      2880
     accctgcggt gattacacgg gtcttaatgc cattactatt ccggacaaat atccgacttc      2940
     gcatctttat gattgcaaca acaatcttca cggcaaaaag attttttccg cgctcgatct      3000
     tcacaaggca ttcaatcaaa ttccaattgc gcctgaggac attgaaaaga cggccattat      3060
     aacgcccttc ggcttatttg aatttttatt catgccgttt ggtcttcgca atgcgagcca      3120
     aacgtttcag agctatatca atcgtgcttt gggggattta gacttcgtct acatatatat      3180
     tgacgatatc ctcatcgctt ctgactctcg tgagcaacat cagaagcatc tgcgcaccgt      3240
     tttcgagcgc ctgaagaaat tccatcttcg gctcaacgtt gacaaaagcg tctttatggt      3300
     agaggaactc gagtttcttg gttacctcat caactctcag ggaatcaggc ctactcgagc      3360
     caaaatcgat gccgtcttga attttcccaa acctcgcacg attgtagaac ttcgtcgctt      3420
     cttaaggatg gtgaattttt atcaccgaaa tcttccgcac gcagccacct ctcaggctcc      3480
     tctcaacgct ttctttcgcg actctcgcaa aaatgacaag cgtttgattc aatggacccc      3540
     tgaagctgac gaagccttcg agaaagtcag atctgaattt gcagaagctg cactcctggt      3600
     gcatcctcgc tcatcccctt cgcaacagcg ctacagcgcg tatgatcgcg agctcaccgc      3660
     tgtttacgaa gccatcaaat attttgcaca catcgtggaa ggttgtgact tctctgtgct      3720
     tacagatcac aaaccactta tttacgcatt cctgcaaaaa actgacaagg ctccacctcg      3780
     tcgtgtgcga caattaaact acatatcgca attcactacg cgtatagaac acgttagagg      3840
     tatcgataac accgtagctg attctctttc gagaatcgaa tcagtgcgtt tccctctgga      3900
     attcgatctt gaggaacttg cagcggcgca agaggctgat aaacagcttc aggagatacg      3960
     cgagtcacct gagcactcac tatccttgaa gcgcattcaa ttcggtccga atcacacaac      4020
     gatatgttgt gatttaacag gtgaaactct tcgacctttt gtaccagttt ccatgcgaga      4080
     atccgtcttt gcgttctttc acaaaccagc tcatcctggg cccaaggtca ctgatcgtct      4140
     gatcaggcag aggtacgtct ggccagcgat gcatcgcgac attgctaact ggtgcaagct      4200
     ttgcctcgac tgtcaacaat caaaaatctc acgacatgtc aagctcactc ccagtcaatt      4260
     tgtagcacca gatggtcgat ttgaccacgt gcatattgac attgttggtc cgttaccaat      4320
     caaggatggc ttgcagtacg ttttgaccat gattgacagg ttttccaggt ggatcgaggc      4380
     tgttcctctc cccgaaacct cggctcaaac ggtcgcacga gctttcttcg atacttgggt      4440
     tgcgaggtat ggcgcgccca aggtcatcac ttccgatcag ggttcacaat ttgagtctca      4500
     gcttttttct gctcttctct cgctcatagg atgcgaacgg attcgcacca ccgcctatca      4560
     tcccgccgct aacggcatga tagagcgttg gcaccgctgt atgaaggctg caatcatgtg      4620
     ccacaacgac acagattggc ctcgtactct ttccacagtc cttctcggac tacgttgtca      4680
     tcttcgggct gataccaacg cttcccctgc ggaattcatg tttggcacta ccctacgcct      4740
     tccgggcgaa tttttcatac ccgaagatca gacaccggat cccaatttct tcttagaaga      4800
     atatcgggaa tacatgcgtc aaatccgacc tatacctgtc gctcataatt ataagaagcg      4860
     cgcgttttat tttaaggacc tttacaaatg tacccatgtg ttcatgcgta acatggctaa      4920
     aaaatcatta gaaaggcctt attcaggacc attcaagatt gttaagcgag tttccgatcg      4980
     cgtcttcgac atagatgtaa acggtaccac gaaaagcgtt acggttgagt tgttaaaacc      5040
     agcttattat attccagatg atctcggcga actagtcccg tcagatagta ctaatggcaa      5100
     tcagccacta tctaatccta gtgataagcc tagttgcaat ccgtctaaca ctagtcgtcc      5160
     agctttaaaa acttatgcgc gcaaaaaagt atcttttgct tcttagtttg cgtcagttct      5220
     ctttagtttt caagaaatac attttgttgt tgttctccgt ttaaggctgc ctcccagcca      5280
     ataaaaaaaa aaaaaaaaaa aaaaatgtta aaacttatta tttaaataaa gaatcatttg      5340
     cgttaacact cgggggggag tgtgtaggga ttctcccctc ttccgccgag tgggggtaag      5400
     ccgccatgtt ggcgaggaga attcgccgcc tgcgcgcggc cagaaagtcg ttggctctcg      5460
     agtcgaacgg ataggaag                                                    5478
//
ID   Gypsy11-NVi_LTR repbase;    DNA;    INV; 306 BP.
XX
AC   AAZX01023279;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11-NV;
KW   Gypsy11-NVi_I; Gypsy11-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-306
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1145-1145 (2007).
XX
DR   Genome; AAZX01023279; Positions   19782   19477.
XX
SQ   Sequence 306 BP; 48 A; 107 C; 87 G; 64 T; 0 other;
     tgggcctcta cccaggtcca gccggaccag gcataaccca cattggtgac cccgacttgg        60
     agagggctgc gcgggacctc gccggatttt cgccggcctg atggtttgca cccgctagct       120
     gctctctgga ctcggcgtct ctgcctcgcg gtttgcctgt tcaggcgacc gccccgcagc       180
     attcatcggc atcatcgccg cggtcagcct attcaggcaa ccgctctgct gcggaaaagc       240
     gacgtcatcg acgcggtcag cctatatagg cgaccgcctt tcaacttgcc atcgttgccg       300
     cggtca                                                                  306
//
ID   GYPSY11_I   repbase;    DNA;    INV; 3524 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY11_I is an internal portion of the GYPSY11 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY11_I; GYPSY11_LTR; TABOR group;
KW   endogenous retrovirus; env; gag; pol; internal portion.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3524
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY11, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 6-6 (2002).
XX
DR   [1] (Consensus)
XX
CC   GYPSY11_I is an internal portion of the GYPSY11 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY11_LTR.
CC   GYPSY11_I is flanked by 7% divergent LTRs. Therefore, the
CC   age of GYPSY11 can be estimated as ~4 million years old.
CC   The internal sequence is incomplete because of multiple
CC   deletions.
CC   Open reading frames, which originally encoded gag, pol and env,
CC   are
CC   corrupted by mutations that cannot be reversed because of a small
CC   number of available copies of GYPSY11.
CC   GYPSY11 belongs to the TABOR group of GYPSY-like endogenous
CC   retroviruses.
XX
SQ   Sequence 3524 BP; 1465 A; 602 C; 589 G; 868 T; 0 other;
     tggcgaccgt gacaggacag ggacctaagg cctaaggaca tagggcctaa ggactacaat        60
     cacaatcaac acaaaatttg tattggactg gactggaaag gcagatggaa gacaaaattc       120
     tcagtgagta gagtaaggca atgagaaaaa agcccggcgg tgggcggcaa aagttaaaac       180
     cgagaatagc tcacctaagg tggctattat attctcaagc agagcttgac ttcctacaac       240
     aagaattaac aaaagcgcca ataaaaacca aaagccaaac tctttcattc atcaaaacca       300
     caaataatac aaaaattaaa actgtaacac caccacccaa agccagcata ccagtttaca       360
     aggaacaatg cccgttggac ttcgagggac aatggagagc ctattgcaaa tacacttgca       420
     aacattgtaa ggacatcaac cagcagaagg agacctgtgc gacaaacagc accggcaccg       480
     cttaacgcgt caagttaagc cagtaagggc acctctaacc accaacagca gcagcagtat       540
     cagcagcaac aacagcagct tgggcagcca gcaccagcac cgtatggaaa ggaaaaggaa       600
     accgacagcg cttccgagag cgcaattttt tttttctcaa tagcactgcg ttgcaaaaat       660
     tttttttaat gcactacgat gcatatttta tttatatagc ctataaagct atacacatcc       720
     aacaggcagg aacatatgta aaaattataa gcaaacattt tttacatata cattttagca       780
     aagaaataat aaacctaaaa ttcaaaaata aagatacaaa tattagaaaa atgtttaacg       840
     taaatgtcaa tagtgacaaa caaaatatat aaagaataaa tttatgaaaa tactgaagag       900
     atcttaaaac ccaatatggg cttagttgat acaaaaacag aacccacatt tttttcaaat       960
     gcaaaatgcc acaaacaaag tggagataga gtcaaacaat ttaagctata taacaataat      1020
     cttgttagca atttttacta atgatcatac atgcactcat aaaagtgtat aaactccaca      1080
     ataaatgcct gaagaaacga tataatagca tggccgatag cctagaaaca atttaatttt      1140
     taaataatga gctcattaat gaaagaaaaa taataataaa atctaaaaaa aatttttttt      1200
     aaatactatt atgtattatg tataatccga attatggatt ggcaaaactt aacagccatc      1260
     ttaaataaaa taaaagaaaa atttgatagg tcacataaaa gtttgtctca gaatagaaca      1320
     atccaaaaac aaactgctaa tgaccataca acctttctgg tagaatcctt caatcaggta      1380
     agatccctta tacatgacca aagagggaaa ctagacaaaa aacagtggac aacagtgtcc      1440
     aaatttttaa ttagacaaga aatactatcc ctattgtaat aaatagcaaa gaaagggttc      1500
     gatctaaaca tatcgatacc aacaattcta aattcccctt taactctaag tgaagaagaa      1560
     acagaataac tcaatgattc tgactctgaa ctagaaatca aagaagaaga cttgaacgat      1620
     ctaacaatac cagcaatgtt gcaattgcca gaagattaaa agaatataga agatcagaaa      1680
     ataaaattaa gcaaaatgac agacaattca gccgccatta gggtctacat aagggaagtg      1740
     tggagcgcag taccggagtt tgatggacaa aagatccatc ttcagaggtt tattgtggtc      1800
     atcaaattag cagaccttgc aaaaggataa tttaaggaca ttgcagtcca agtaataaaa      1860
     tcaaaattga ttggcactac tctaaacctg gtactgagcg aatctacaat tgaagcaata      1920
     attaacaaac tgcacacttc aattgttggg gagacatccc aaaacatcaa ggcaaaatta      1980
     tccactgtac aacaaacaaa aaggcaaaac agctacacag ttcacaaccg aagttgataa      2040
     tttacgtgag ctcttagaag cctcgtatat cgatgaaggt ttacaaagtg agcaagccat      2100
     cgatgttatg atcaaaaaga ccaaacacga aagtgtgaaa actgtgctag aagcaggtac      2160
     gtgcacaact atggatgatg ccataggtgc ataaaaacta gcaccagagt aaccggaaat      2220
     gtgaatcatt taatgtaaga gaggttactc taactctaga ggccaaggta atggtcgcgg      2280
     cagaggcaat ggccattaca atagtcgata caataacaat aataacaatt acggcgataa      2340
     cggtatccaa aagaatggta acaattatag atgccgtggc aactcaaaga gaggaagccg      2400
     aaacaatcag aattgaaata ataacaataa caatgataat gctagtgtga gagtaaccca      2460
     aaataattcg ggaaactcga aaaaagcctc agatgcacgg caataaagct catgtacatt      2520
     taatcaatct aagtattaat atattgcatt tgatcatgtg catttgcatt tgacccaatt      2580
     cgacagagtg atagtggaca ctataggtcc tctaccaaag tcggaaaatg gcaacgaata      2640
     tgcagtcact ctcatttgtg acttaactaa atatttagtt gcgattccca taccaaacaa      2700
     atgcgcaaca gcagtcgcta aagcaatttt cgaatctttt attcttactt atggtccaat      2760
     gaagacgttc attacggaca tggggtacat aatataagaa ttcaatcatt acagatcttt      2820
     tcaaatatct aaaaattaaa aatataacgt ctaccgctca ccatcaaaca gtaggtgtag      2880
     tcgaaggaag tcatagaact ctaaatgaat acatacgatc ttacatatcg gttgataaaa      2940
     ctgattggga tgtatggatt cattatttcg tctattgttt taatagaacc ccttctatgg      3000
     tacaaaatta ttgtccatat gaacttgttt ttggtagaac aaataattta cccaaaaatt      3060
     ttactaatat aactagcata gaaccaatat acaatataga tgattatgct aagggaaagt      3120
     aaatatagat tagaagtagc atataaaaga gctagaacta tgcttgaaaa gcattgaaaa      3180
     aataaggaaa attatgattt acaaacacaa aatatagaaa aaacagtagg atataaagtt      3240
     ctattaagaa atgaagtagg tcgtaaatta gattttaaat atacgggacc ctatacggta      3300
     gaaaatatag aagaaagaga caacataaca atatcaaaca ataaaaatta aaaacaaata      3360
     ttacataaag atcgattaaa agttttttat tcataaatga cgtcatgatt taatacaaaa      3420
     agcattataa taatggaaaa atacaattta aaatgtcaaa aacaaaaaat atatatatat      3480
     aaaaaaaaaa acaacaaaat aattattttt taaaaggagg gaga                       3524
//
ID   GYPSY11_LTR repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY11_LTR is a long terminal repeat of the GYPSY11 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY11_I; GYPSY11_LTR; TABOR group;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-452
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY11, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 7-6 (2002).
XX
DR   [1] (Consensus)
XX
CC   GYPSY11_LTR is a long terminal repeat of the GYPSY11 endogenous
CC   retrovirus. There are several copies of GYPSY11_LTR in the
CC   genome;
CC   they are ~96% identical to the consensus sequence.
XX
SQ   Sequence 452 BP; 159 A; 92 C; 74 G; 126 T; 1 other;
     tgtggtatgc gtacatatat atttagagta catatataca tagagtacaa tgtactcaga        60
     atacttacat aaatcactaa cataattaca tacgcattgg cagtgctagc ataaacaata       120
     atgttcaagt ggaagtgtta tatgatcgcc cacttatgaa gcacactgca taagtgcatg       180
     gtcagcattc ccacgctaac caaatgccgc tatgtacata atgtgcgcac atagcatttt       240
     ctctcaactc tcttaacata artatataat ataatatata acagccgctt ctctgccgac       300
     ttcaccaggc agcgaaggcg cacttcatag cctaagagga atattgtatt agctttaaga       360
     gtcagtcgag ttttacaact gatacgagct tcacgataaa aataaacgga gctatgctcc       420
     agaaaaacat ctaaaggatt ttcaatataa ca                                     452
//
ID   GYPSY12-I_AG repbase;    DNA;    INV; 5759 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY12-I_AG is an internal portion of retrotransposon GYPSY12_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY12-I_AG; GYPSY12-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY12_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5759
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY12_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 166-166 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY12_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY13_AG,
CC   GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY12-I_AG consensus was reconstructed after multiple
CC   alignment of 12 copies.
CC   The consensus encodes the 414-aa GYPSY12_AG1p gag-like protein
CC   (pos. 807-2048) and the 1233-aa GYPSY12_AG2p (pos. 2000-5698).
CC   The sequence of the LTRs flanking GYPSY12-I_AG is deposited as
CC   GYPSY12-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           807..2048
FT                 /product="GYPSY12_AG1p"
FT                 /translation="RMKQKIELLVERLKQLHDNLKHIDRCYRQCAISTYEE
FT                 SAKETFKKLQEKLVKYENEISEEELTYTSKIARTLYSDITKFIAIHKQKFT
FT                 VSINNVSLGTQTMATFNLKEASAVVPTYNGSADQLQSFLRAIHFAKRMFPD
FT                 DQEGLLVDFIYTRLSGKAETGIKPNLTTVQQVAEDIKSRCEEKVEPSKVIA
FT                 NMKSLKTKDTKTLCKEIEELTEKLKVLYLQKQIPTEVANEFAIREGINSLI
FT                 DKVSNREAKTALIIGKFTTINEATKVVDECESRQDKAQVLAYQGSYNNSRF
FT                 NNYRQQNRNYQYNNRPNSNQSYRRNDNYRNNNNFNNRNYNSDGYNSNQRNN
FT                 NRSGNNRDNQNQRYNNNGYQNRPNRSPRAITNRETGQQSRNVYHTTAQVQE
FT                 DENNFLDQKESTQTLDQYTR"
FT   CDS           2000..5464
FT                 /product="GYPSY12_AG2p"
FT                 /translation="FFRPKGINSDSRPIYSLDLNGVDYIKIKLSFANTETS
FT                 ILLVDTGASVSLFKSSKLKKNHSPIRSNSISLTGISNTPIYSKGITTCTIF
FT                 FNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYELLLLTFTCQGE
FT                 EIQHNIEEDDGKGFILPIRSEVVRRIYLPNITEDTIVFAQEIQPGVFCGST
FT                 IISKDNQVVKFINTKQRNIYITHAEFKPITEPLSNYEAKQVNNKAGEVNND
FT                 RLQKLLQKIKIDKIPTSEIYNLRKIVTEYNDIFCVEDDPITTNNFYPQKIE
FT                 LKDNIPTYIPNYKQIYSQTDEIQNQVDKMLKNDIIEHSVSPYNSPILLVPK
FT                 KSTDGNKKWRLVVDFRQLNKKVIPDKFPLPRIDSILDQLGRAKYFSTLDLM
FT                 SGFHQIPLENDSRKFTAFSTGSGHYQFKRMPFGLNISPNSFQRMMAIAMAG
FT                 LTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLRHYNLKLNPEKCSFFKT
FT                 EVTYLGHKITDKGIYPDDSKFETIRNFPIPKNADEVRRFVAFCNYYRKFVH
FT                 NFANTAKPLNNLIKKKVKFIWTDECQNAFNSLKQSLLSPTVLKYPDFKKEF
FT                 ILTTDASDVACGAVLSQITDGEDHPIAYASKSFTPGEKNKPIIEKELTAIH
FT                 WAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKI
FT                 EFLAGKTNVVADALSRIVTDSDELKASIPKNKTDLANPILLVNTRAMTRKN
FT                 ITADKKEKEKDKEETKVKYDQTNMYETDRPSETTKMLKMKSNIIENEEFIE
FT                 LVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLIARKYHKNLAIASN
FT                 DKLFEFYSMSTIKEIINKMITDVHVIVYTQPKWIEEKEEQFQIMSNFHTTP
FT                 VGGHLGQFKLYSKIKDKYKWKNMKADIIKYVKSCKACATNKILKHTKEETV
FT                 VTTTPSKPFNIITIDTVGPLPKTANNNRYAVTIQCELSKYIVIIPIQNKEA
FT                 NTIAKALVENFILTFGNFLEMRSDQGLEYNNEILTQISKILEIKQTFAAAY
FT                 HPQTIGALERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSITNL
FT                 TPFELVFGRQANLPQELYKTKVDPVYNIEQYYNEMKFKLQKAHAIAK"
XX
SQ   Sequence 5759 BP; 2423 A; 999 C; 912 G; 1425 T; 0 other;
     tggcgaccgt gaattttaag ctgcaatctt cggatgtgca aaaaaaaaag taatgaatga        60
     aaccccaaac acggacaaaa agtgcaaagt ggaaacgttt tataaaaatc gcaagtgctt       120
     ctgaaatgac ttggaaagtg attaattacc aacaatagta aactgcgagt gaaaaccaat       180
     cattttcaaa atgggaggca aggctgcaaa acctgaaaca aatatcaaag gagaccatga       240
     tcttacaata gtccaaactc agaatattca tacagaatat catctgactc aggatttaaa       300
     actaaacatt attttagggc tgctaatcac cctgtgcatt gttaaaatag cgaaaacttg       360
     ttacaaacac cttcgtaacc aagcgcaaaa acacgcttta aaagtgctta cgctaccaaa       420
     gtagcaacgt aaacattgaa tcgagaacag tgaatgaatg atatacgaaa aaggtgatat       480
     gctatttgac ccacaaaaat aggtaaaggc tgtggaaaag taccgtaagt tcaccaatgc       540
     agctattgac cgcgattatg aaaaaaaaac aattatgcgc gtatgagaac ctaccgcaac       600
     gtgtaaaaac actgtgacca gcggtatggt ttggaacagc cgtgcccaac gcggaagacg       660
     agaagaataa ggcaagaatg gacatacccc gtcccaaccc ggacgagaca tagagactga       720
     tgatgagatc gagacatcgg gcatgactcc agctacgaga actccaaggt actgcataac       780
     ccttaattta taaattaata tgatgaagaa tgaaacaaaa aatagaacta ctagtagaaa       840
     gattaaaaca actgcatgat aatctaaaac acatagacag atgctacaga cagtgtgcaa       900
     taagcacata tgaggaaagc gctaaggaaa cttttaaaaa gctacaagaa aagttagtta       960
     aatatgagaa tgaaataagt gaagaagaac taacgtacac atctaaaatt gctagaacac      1020
     tatatagcga cataactaaa ttcatagcaa ttcacaaaca aaagtttaca gtttcaatta      1080
     ataacgttag tttaggaacc caaacaatgg cgacgtttaa cctaaaagaa gcttcggctg      1140
     tagtaccgac atataatgga tccgcagacc aattacaatc cttccttagg gcaatacatt      1200
     ttgcaaagag aatgttcccg gatgatcaag agggactatt ggtagacttc atttacacta      1260
     gattatctgg taaggcagaa accggaataa aacccaacct taccacagta cagcaagtag      1320
     cagaggatat aaaatcacgc tgtgaagaaa aggtagaacc aagcaaagta atagctaaca      1380
     tgaaatcatt aaaaactaag gatacaaaga cactttgcaa agaaatagaa gagcttacag      1440
     aaaaattgaa ggttctctac cttcaaaaac aaattccaac cgaagtagca aatgaattcg      1500
     caattcggga aggaataaat tcattaatag ataaagtgtc aaatcgagaa gctaaaacag      1560
     ctctcatcat tggaaaattc acaactataa acgaagctac taaagtagta gatgaatgcg      1620
     aatctcgaca agacaaagca caagtacttg cttaccaggg ttcatacaac aatagtagat      1680
     tcaataatta tagacaacag aacaggaatt atcagtataa taaccgtcct aactcaaacc      1740
     aatcatacag acgcaatgac aattacagaa acaacaacaa tttcaataac cgcaattata      1800
     acagtgatgg ctacaacagc aatcaaagaa ataataaccg cagtggcaat aatagagaca      1860
     accaaaatca aagatacaat aataatggct atcaaaacag gccaaataga agtcctaggg      1920
     ctataacgaa tcgagaaaca gggcaacaat ccagaaacgt atatcatact acagctcagg      1980
     tacaggagga tgagaataat tttttagacc aaaaggaatc aactcagact ctagaccaat      2040
     atactcgcta gatttgaatg gagttgatta cataaaaata aaattgagtt ttgctaatac      2100
     cgaaacatct atattattag tcgacacagg agcatcagta tcattattca aatcaagcaa      2160
     attaaagaaa aatcacagtc caataagatc aaattcgatt tcattgacag gcatttctaa      2220
     cacaccaata tattctaagg gtattacaac ttgtactatt ttttttaaca atttagaatt      2280
     ggaacatgac tttgtattag ttccagatga atttaacata ggagcagacg gtatattagg      2340
     tagagatttt tacaaacttt acagatgttc tattaactat gaattactat tgcttacatt      2400
     cacatgccaa ggagaggaaa ttcaacataa tattgaggaa gacgacggaa aaggatttat      2460
     tttacctatc agaagtgaag tagtacgaag aatatacctt ccaaatataa ctgaggacac      2520
     catagtattc gctcaagaaa tccaaccagg agtattttgt ggtagtacaa tcatttctaa      2580
     agataatcaa gtagttaaat tcatcaacac aaagcaacga aatatctaca taactcatgc      2640
     agaattcaaa cctattacag aaccattatc gaattatgaa gctaaacaag taaataacaa      2700
     agcaggagaa gtaaacaatg atagactgca aaaactttta caaaaaatta aaatagataa      2760
     aattcccacc tcggaaattt acaatctaag aaaaattgtt acagaataca acgatatttt      2820
     ttgcgtagaa gatgatccaa ttactacaaa caatttttac cctcagaaaa tcgaattaaa      2880
     agacaatatc ccaacttaca taccaaacta taaacaaatt tattcacaaa cagacgaaat      2940
     acaaaatcaa gtagacaaaa tgcttaagaa tgatataatt gaacattcag tttcaccata      3000
     taattcacca atcttacttg ttccaaagaa atcaacagat ggtaataaaa aatggagact      3060
     tgttgtagat ttcagacagt taaacaaaaa ggttatacca gataaatttc cattgccaag      3120
     aattgactca atactagatc aactcggcag ggcaaaatat tttagcaccc ttgacctcat      3180
     gtcaggattt caccaaatac ctctagaaaa tgattcaaga aaatttacag ctttttcaac      3240
     cggatcaggg cattaccaat ttaaacgtat gccgttcggt ttaaacatta gccccaacag      3300
     ttttcaacgt atgatggcta tcgctatggc aggattaact cctgagctag catttgtata      3360
     tatagacgat ataatcgtta ctggctgcag tgcacggcag cacatcagta acatagttaa      3420
     ggtttttgat agattaagac attacaattt aaaattaaat ccagaaaaat gttcattttt      3480
     taaaacagaa gttacctatt taggtcataa aataacagat aagggaatat atccagacga      3540
     ttctaagttc gaaacaatta gaaattttcc aatacctaaa aatgcagacg aagtacgaag      3600
     atttgtcgca ttttgtaatt attatcgtaa gtttgtacat aatttcgcta atactgctaa      3660
     acctttaaat aatctaatta agaaaaaagt aaaatttatt tggacagacg aatgtcaaaa      3720
     cgcatttaat agcttaaaac aaagtctttt atcacctaca gttttaaaat atccagattt      3780
     taagaaagag tttatattaa caacagacgc ttctgatgta gcatgtggag cagttctttc      3840
     acaaataaca gatggagaag accacccaat agcatatgca agcaaaagct tcacaccagg      3900
     agaaaaaaat aagcctatta ttgaaaaaga attgacagca attcattggg caattaatta      3960
     tttcaaacca tatctatacg gtagaaaatt tactgtaaaa acagatcata gaccattagt      4020
     atatttgttt ggtatgaaga atccaacatc aaaactaact agaatgagat tagatttaga      4080
     agagtttgat tttaaaatag aatttttagc aggaaaaact aatgtagtag cagatgcgct      4140
     atccagaatc gtaacggatt ctgacgaact taaagcatct atccctaaaa ataagacgga      4200
     tttagctaat cctattttat tagtgaatac tagagcaatg acaaggaaaa atataactgc      4260
     agataaaaaa gaaaaagaga aagacaagga agaaacgaaa gtgaaatatg atcaaactaa      4320
     tatgtatgaa acagataggc catctgaaac aactaaaatg ttgaaaatga aatcaaatat      4380
     tattgaaaat gaagaattta ttgagctcgt gatatacaat cacaattatt acaaagcgct      4440
     gggaaaattt aaaataccca taacttctgc gaagcaaagt caaacactag agtttgtact      4500
     gcatgaatca tgcctaatcg ctagaaagta tcacaagaat ttagcaattg catcgaatga      4560
     caagttattc gaattttatt caatgtcgac cataaaagaa attattaaca aaatgataac      4620
     agacgttcat gtcatcgtgt atacacaacc taaatggata gaagagaaag aagaacaatt      4680
     tcaaataatg tccaatttcc acacaacacc agtaggaggt catctaggac aattcaaact      4740
     atatagtaaa ataaaagata aatacaaatg gaaaaatatg aaagcggata tcatcaagta      4800
     tgtcaaaagt tgtaaagcat gcgcaactaa caagatccta aaacatacta aagaggaaac      4860
     tgttgtgacg acaacaccct ctaaaccttt taacatcata acaattgata ccgtaggacc      4920
     gctaccaaaa acagcaaaca ataatcgata cgcagttacc atacaatgcg aattatcgaa      4980
     atatatcgta ataatcccga ttcaaaacaa agaagcaaac actatagcaa aagctttagt      5040
     agaaaatttc attcttacat ttggaaactt tttagaaatg agatcagatc aaggacttga      5100
     atacaataat gaaattttaa cccaaatatc aaaaatatta gaaatcaaac aaacattcgc      5160
     agcagcatat catccccaaa caataggagc tttagaacga aaccacagaa gcttaaacga      5220
     atacttacga agttatacca atgaacacca tgacgattgg gatcaatgga ctaaattcta      5280
     tgaatttgtt tacaacactt cagtacacag cataactaac ctcacaccct tcgaattagt      5340
     atttggaaga caagcaaatt taccacaaga actatacaaa acaaaagtag acccagtgta      5400
     caatatagaa caatactaca atgaaatgaa atttaaatta caaaaagcac atgcaatagc      5460
     caaaaacaaa ctaatcgcat caaaaataca acgtcaagcc aaacttaatg aaaatctaaa      5520
     caaattaaac atacgcatag gagattacgt ttacctaaca aacgaaaata gaaaaaaatt      5580
     agatccagtc tacataggac catttacaat cgtagaaatc acggatacaa attgcgttat      5640
     aaaacataat cagacaggaa aaatcacaac ggtacataaa aaccgattaa aacagtttta      5700
     gtgaataatg cactcattcg taaaaaactc aatcgtacat tattcaaaaa gggtggagg       5759
//
ID   Gypsy12-I_Dpse repbase;    DNA;    INV; 10352 BP.
XX
AC   Unknown_group_699;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12_Dpse;
KW   Gypsy12-LTR_Dpse; Gypsy12-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-10352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1084-1084 (2009).
XX
DR   Genome; Unknown_group_699; Positions    3871   14222.
XX
CC   Positions [7959-8501] - Reverse transcriptase
CC   Positions [3937-4416] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2314..4653
FT                 /product="Gypsy12-I_Dpse_1p"
FT                 /translation="MPSISMILTNLGTARYFTTLDLKSGYHQITLAERDRE
FT                 KTSFSVNGGKYEFCRLPFGLRNAGSIFQRAIDDVLREQIGKTCYVYVDDVI
FT                 IFSKSQDDHVKHVDWVLKSLYDANMRVAREKSNFFKTSVEYLGFIVTNEGT
FT                 RTDPEKVKAIQEYVEPTTLFGLRSFLGLASYYRCFVKDFASIARPLSDILK
FT                 GENGSISKYKSKKTTINLSEVQRHAFQKLRNILASENVILMYPDYKKPFDL
FT                 TTDASAYGIGAVLSQGGRPITMISRTLKKGERHYATNERELLAIVWALGKL
FT                 RHYIYGVRDINVFTDHQPLTFAVSEGNPNSKIKRWKARIDELGAKLFYKPG
FT                 KENHVADALSRQNINALEDSAPPSDAATIHSEASLTYTIETTDKPVNCFRN
FT                 QIVLEAARFPLKQMFILFGEKTRHIINFTDKNALTGVVKTSVNPTVVNAIH
FT                 CDFPTLACIQHELVRAFPSTKFWHCKNLVTDIFNENERKEIVTIEHNRAHR
FT                 AAQENVKQVLADYYFPKMTKLASEVVMNCRICSRAKYDRHPKKQELGPTPV
FT                 PSFTGEMLHVDIFSTDRKYFLTCVDKFSKFAIVQPIASRTIADIKAPLLQL
FT                 MNIFPNTRQIYCDNEPSLNSETIRSLLRDNFGAHIVNAPPLHSTSNGQVER
FT                 FHSTLLEIARCLKIAKGIVDTVDLFLQATVEYNRSVHSVTNKKPIDILNAA
FT                 AADFHSEVQNRVRKAQIVQNNRVNRSRQNRVFRVGDKVLLKPNRRLGNKLT
FT                 PLYVEETVEADLGTTVLIRGKVVHKDNLR"
FT   CDS           6560..7666
FT                 /product="Gypsy12-I_Dpse_2p"
FT                 /translation="MEDLENAEKNTEDKIDQMIKLLSLKVLCDEQREMKIA
FT                 PDNFTKVVSDCDGKSVPIEKWFEIFEKNADAYELTVKQKYVQARGKITGAA
FT                 KVFLEAQCVCTYEELKNVLLDEFTCSYNSADIHKLLQERKRKSSESMHEYL
FT                 LQMRKIAAVGHVEDAAVISHIMNGLDIRKEYKYAMYRCKTFRAMKEEFDIY
FT                 DRLNILEKKGNNEQHKTSFKQQSGQSGKKEYCFNCGSGEHKRKDCKAETKC
FT                 FNCNQNGHISRNCPYEADKVDKVRVILDRSRMKEIQINGIVVDCLVDTGSD
FT                 VTIIKESMLKTMKNVKLLKCTTMLRGLGQISTKPVGYFNAEVTVDNLQTTQ
FT                 KFLVVPSSQIDFDALLGHDFIKKFRR"
FT   CDS           7641..10103
FT                 /product="Gypsy12-I_Dpse_4p"
FT                 /translation="MISLKSFVADMQGYTFLKHDADPVPTDEHALIYNVTE
FT                 ESSFVAPPQYRKDVEQMIRNSYQMPTEVTKQSPIQLKIVPDGVIKPFHHSP
FT                 SRLSTDEASAVKKQVEEWNEQGIVRKSSLNVASRVVVVKKKDGTLRVCVDY
FT                 RKLNSMVLLDCFPVPIMEEVLEKLQSAKWFTIMDLENGFFHVPMEEQSKSY
FT                 TAFVTKEGLFEFNKAPFGFKNSPAAFIRFVSYIFQELINSDIMQLYMDDII
FT                 VYAASPEVCMRKTKLVLETAAQFGLKIKWKKCSFMQPRISFLGHIIEDGRI
FT                 WPGKEKTAAVSRFDTPKDIKAVQAFLGLTGFFRKFIPGYAQVARPLTNLLR
FT                 KEAVFNIGEAEQQSLQTLKNLLVIAPVLHLYSREAPTELHTDASKEGFGAV
FT                 LLQQFDGNFHPIYYCSKKTTQAESKRHSYYLEVKAAYLALKKFRHYLLGIK
FT                 FDLATDCAAFKQTTTKADIPREVSQWILYMEDFTFKVVHRPGDRMRHVDCL
FT                 SRFPQTCMFVTTELTARIKKAQQDDDFIKATVEILKQHPYQDYKLKGGLLF
FT                 KSVNGNDVLVVPKLMEREIIQGSHEVGHFSTAKTMHSVQQQYWIPHLERKV
FT                 NKLITNCISCIIFSKKLGKQDGYLHCIDKGDTPLYTLHVDHLGPMDATAKQ
FT                 YKYIFAVVDAFSKFVWLFPTKSTGHEEVVKRLRDWSFVFGFPKRIVSDRGA
FT                 AFTSNAFSEFLNENKVEHVCTTTGVARGNGQIERVNRSILGIIAKLSAQES
FT                 TSRHSRSCLGQRCTDKLKVDYWRFSTRSWLRSLTTSAKNCVTKRNKTLRRR
FT                 KRCTSAIMIKNDDLSTATD"
XX
SQ   Sequence 10352 BP; 3269 A; 2331 C; 2391 G; 2361 T; 0 other;
     gtaccactaa ccatacagta tactgtatat gtaagttatc cgatccagcc ggatacccct        60
     ccctctgcat ttggttctcg accctacagc gggtcaatga gcttaaacac cttcatatga       120
     accaaataca gcacatgcct cgtcgcgtaa tagaacacga gagttgcagc gttgacggaa       180
     acacttgccc agacggccca acaacaacca tggggccgtg gaacgtgata aactgccgct       240
     gctcaacata acaccggcgc gtgtgccatg tcagcagatt aatgcaccgg cgactgcgca       300
     gccagcgttc ggggacttaa tattaagact ttcattttta tgtaaattta gattctctta       360
     gacctccaac gaggaacaat aaatctcgct tcgacgagtt aataataaag aataaatact       420
     acaataatcg tcgattctac ttaacttaaa tggcgcccaa cggaatttta tccaacgcga       480
     gtaattattt agtaaaaatt cgtaagctaa cgcttcgggc ttaacgaaaa taaaagaaac       540
     ataaaaagtg cttacccaac tcgaggttct actactaaat tagcgagcta acgccgcaag       600
     tgtaataaac aacaagtgag gtgaaataaa taaaaaaaac cacacccgga agaagctgaa       660
     gggcaatccc tcgctcccgg catcaacgtc tacgaaagaa aaagcaggct gaagggcaat       720
     ccctcgcctc aaaaattaaa accaacaagc tgaagggtga tccctcgctt ccctcatcgc       780
     cacccacaaa ggaattaata attaatcaaa ggaaactaat aattaagtca aataaaacac       840
     ggtataaacc gcagaaaacc atgtaagtga gctcttttta taaaatttta ttcaagcatt       900
     ttggtaatcg cgacccaata aaaataaaat aatactgagt ggtgcagctg agatatttaa       960
     aatcaaaatc aaattcatta aaaaaaaaag aaaatacaat aaaataagaa gaacattgaa      1020
     aacagcagta tttccggcaa gaccgaaaga tctgcagacc gctctggccc ttgccgatcg      1080
     cagcgttttg gctgcaaatt acgctagggc catggaggaa aaggcccaaa aaacgggcca      1140
     gcgccaaact caagcgcaac tccagggcaa ttttaggcaa actagagctg tggactccta      1200
     taaaagtcct cattacgaca aaaggcaaga cgcgtcgatc gcccagcaga tccaaccaac      1260
     gatccaatag cggcaggact cgggcccagg gcccggagcc catggatgta gatccttctt      1320
     cttccaaact cagactgccc actgcttacc aaaaaccttt cgggtcgggt ggacgcaatc      1380
     aaaattttac gaggaaaaca aacgcgtcag agcgcacctc gagaaattgg cagcagagga      1440
     tagagcacac tacaaccggg gacaaccaga ccgacacggc ctacaatggg gctgcggccg      1500
     aagctgtcgc tgagatagaa gcggagggcg aattagagta cgagagcgac tcagtgaatt      1560
     ttttagggga agatccctgc tgccattcgt gtggcggaaa atagcaggga ttaatatgaa      1620
     gcttctcata gacacgggtg cgtcaaagaa ttacatcaag ccgtgtaaat ggcttcgcgg      1680
     cgtcatccct gtcgaggcac cctttcccgt ctactcaatc aacgggacaa atgaaatttc      1740
     gaagaaatgc cttctgtcaa tattcggcaa gacctcccca ttttttttgt tagaatcatt      1800
     atcatcattt gacggcatca ttggccttga cctgctatcg caggtagggg cgacattgtg      1860
     cttaaagagc ggtacactca gattcggtaa cacgactgag gtaatcaaat tccacaagtg      1920
     catagacgtc aaccacacaa acgttattga cgtcgatgct cccccagcca taagggcgga      1980
     ctttataaaa atgttaaata agaggagtaa ggcatttgcc gaccctaacg gggctctgcc      2040
     ttataatact tcggtcgtgg ccactatccg cactgtggac gacgaaccaa tttactccaa      2100
     gctgtacccg taccctatgg gtgtagctga ttttgtcgaa tcagaggtca agagcctttt      2160
     gaaagacaaa atcattcgca aatccagatc gccatataat aatcctatat gggtggtcga      2220
     caaaaaaggc actgatgaag cgggcaataa gaagaaacgt ctcgtaatgg actttcggaa      2280
     gctctttcac aaacagtggc cgacaaatac ccgatgccaa gcatctcaat gatcttaaca      2340
     aacttgggta ctgccagata cttcacaaca ctggacttga agtcaggata ccaccaaata      2400
     accttggcgg agcgcgaccg agaaaagact tccttttccg taaatggagg gaagtacgag      2460
     ttttgccgac tgccctttgg tctacgaaat gcaggtagca ttttccagag agcaatcgat      2520
     gatgttttgc gcgaacaaat cggcaaaaca tgctacgtct atgtcgatga cgtaattatt      2580
     ttctccaagt ctcaagacga ccatgttaaa cacgtcgact gggtgctgaa aagcctctat      2640
     gacgccaaca tgagagtcgc tcgagagaag tccaattttt ttaagacgag cgtggaatac      2700
     ctcggcttta ttgtgactaa cgaaggcacg aggacggacc ctgagaaggt gaaggccatc      2760
     caggagtacg tcgagccaac aacgttgttc ggcctaaggt cgttcttggg cctggcaagt      2820
     tactacagat gcttcgtgaa agatttcgcg tcaattgccc gaccgctttc tgatatttta      2880
     aaaggggaaa atgggtccat cagcaaatac aaatcaaaaa aaaccactat aaatttgagc      2940
     gaggtccaac gacacgcctt tcagaaatta aggaacattc tggcatcaga aaacgtaata      3000
     ttgatgtacc cagattacaa aaaaccgttc gacctaacga ccgacgcctc tgcctatggc      3060
     atcggggcgg tcctttcaca aggcggccgc ccaataacta tgatttcaag gacactaaag      3120
     aaaggtgagc gtcactacgc taccaatgaa cgcgagcttt tagcaattgt gtgggccttg      3180
     gggaagcttc gtcactacat ttacggagtc agggacatta atgtgttcac tgaccaccag      3240
     ccactcacgt ttgcggtttc cgaaggaaac cctaactcta aaataaaacg ctggaaggca      3300
     cgcattgacg agctcggtgc caagcttttc tataagccag gcaaagaaaa ccatgtcgca      3360
     gacgcattgt ctcgacaaaa catcaatgca ttggaagaca gcgcgccacc atctgacgca      3420
     gcgacaatac acagcgaagc gtctttgact tacacgatag aaacgacaga caaacctgtc      3480
     aattgtttta ggaatcaaat cgtcctagaa gcggcgcgtt ttcctctaaa gcagatgttc      3540
     attcttttcg gggaaaaaac gcgacacata ataaatttta cggacaaaaa tgcgttgact      3600
     ggggtcgtga agacctcagt aaaccctacg gttgtaaacg caatccactg tgattttccg      3660
     actctagcct gcattcagca tgagctagta cgcgcctttc cgtcgaccaa gttctggcat      3720
     tgcaagaatc tggtcacaga cattttcaat gaaaatgaaa gaaaggagat tgtcacaatc      3780
     gaacacaatc gagcacatag agctgctcag gaaaacgtaa aacaggtctt ggccgattac      3840
     tatttcccaa aaatgactaa actcgcaagc gaggtagtca tgaattgcag gatttgttct      3900
     agagcaaagt acgataggca tccaaaaaaa caggagctgg gaccaacgcc agtcccttcg      3960
     ttcactggag aaatgcttca cgtcgacatt ttttcaacag ataggaagta cttcctaaca      4020
     tgcgtggaca aattctcgaa atttgccatc gtacaaccga tagcttcccg cacgattgcg      4080
     gatataaagg ctccactctt gcaacttatg aacattttcc ccaacactag acaaatatat      4140
     tgcgacaatg aaccatcgct gaattcagaa accatcaggt cacttctgcg agacaatttc      4200
     ggagcccaca ttgtgaatgc tcctcccctc cacagcactt caaacggcca agttgaaaga      4260
     ttccatagta ctctgttgga aatcgcgaga tgcctcaaga tagcgaaggg aatcgtcgac      4320
     acagtcgacc ttttccttca ggcaacagtg gagtacaaca ggtcggtaca ctcggtaacc      4380
     aacaagaagc cgatcgatat tttaaacgcc gctgcagcag actttcacag cgaggtacag      4440
     aacagggtac ggaaagctca gattgtgcag aacaatcgag tcaaccgatc gcgtcagaac      4500
     agagttttta gagtaggtga taaggtatta ctgaaaccca acagacgcct cggaaataaa      4560
     ctaaccccgt tgtacgtgga agaaacggta gaagcggact tggggacaac ggtcctaatt      4620
     agggggaagg ttgtgcacaa agacaatctt aggtaatgcc cctatgccca tacgtgagcg      4680
     ttccactcag ccgactattt tttacgctcc atttacattc atacttagag actcgatcac      4740
     agattaccaa gcaacctttt ctttcattcc ttaggttgtt tcacatgata atccttctgg      4800
     tggccttggt aaacgctcgc ataacagact actcacattc tgactacgta ccgatattgg      4860
     acggcgacat actcgtatgg gacgaaataa attaccttag gcattcgaca aacttaacgg      4920
     attacgaacg aatggcggac gagaccgcaa atttgaccga gatgtttcca cagtcgcaca      4980
     tgcgaaaact actagtggtg gataccgacc atatccgaaa tatgttagcc acgattagcg      5040
     tgcaccacag agttgctagg agcctaaaca tcctgggctc ggtcttaaag gtggtagccg      5100
     gaactccgga cgcggacgac ttagaaaaga tacgaataaa cgaggcccaa catattgaat      5160
     cgaataacag gcagataagc ataaattcta agtctcagga gcaaatcaac cgcttaacag      5220
     actcagtcaa taaattgcta gaggcagcaa agggaaagca aattgactcg gctcacctgt      5280
     acgagacctt gctggctagg aacagaatgt tggcatccga ccacgacaac attctgcgaa      5340
     acgtcgacaa aggactcctg tgcccaagga ttatattctg gtggcgtggc ccactgccag      5400
     tcgcaaccca gccacctcag cgccatcaca ctggtcgacg acggcatcat tatcatcaac      5460
     gatcacccag cagcagtaag tttcgacggc agcgcggcgc tcaacatttc agggacgcat      5520
     ctaatcacat tcaacgatta tgccgtcata aatggttcac ggtatcagaa tcgcaaaaac      5580
     gttcagagcc gatacccagg agttgcatct tcacccttgc taaatgttac cgagcataaa      5640
     agggtgctaa gcctgccatt cctccaccag ttgagcgagg agaacctcaa cttcatcaag      5700
     gagataaagg aagaggtgtc ctcacgttcc agaccaatct ttgcattctg cctaggacta      5760
     ggtatttgtg gcctagtatg tggcatggcc atgctcagac tatatttgac gaagaagcgc      5820
     gacgcccggc aaatcaatgg attaatggca agactaagtg cgccggggac ggcgactgct      5880
     caaggggggg agtagttatc cgatccagcc ggatacccct ccctctgcat ttggttctcg      5940
     accctacagc gggtcaatga gcttaaacac cttcatatga accaaataca gcacatgcct      6000
     cgtcgcataa tagaacacga gagttgcagc gttgacggag acacttgccc agacagccca      6060
     acaacaacca tggggccgtg gaacgtggga aactgccgct gctcaacata acaccggcgc      6120
     gtgtgccatg tcagcagatt aatgcaccgg cgactgcgca gccggcgttc ggggacttaa      6180
     tattaagact ttcattttta tgtaaattta gattctctta gacctccaac gaggaacaat      6240
     aaatctcgct tcgacgagta aataataaag aataaatact acaataaacg tcgattctac      6300
     ttaacttaac ttgtatgtag tatacttact gtataccttg tatatatgta gtatactgta      6360
     tggttagtgg cagtacatac ataagcagaa aaaacacgca cagacacgtt gtgtgtgata      6420
     cacaaaaaga caagcactcg tcgggtacac agacacaagt cgaaaagagc cgcaaaatga      6480
     tgcaaacacc gccgccgttg cattggaaag agagagagaa ggtgctgtac caggaacgtc      6540
     gcgcccgagt gcaaacgaga tggaagattt agaaaatgcg gaaaagaata ctgaggacaa      6600
     gattgatcaa atgataaagt tgctaagttt gaaagtgctt tgcgatgagc aacgagaaat      6660
     gaagatcgct ccagataatt ttacaaaagt tgtgagcgat tgtgatggaa aatcggttcc      6720
     catagaaaaa tggtttgaga ttttcgaaaa aaatgccgac gcatatgagc ttactgtaaa      6780
     gcaaaagtat gtgcaggcca gaggaaaaat taccggtgca gctaaggttt tccttgaagc      6840
     acaatgcgtg tgcacctatg aggaactcaa gaacgtatta ttggatgaat tcacatgtag      6900
     ctataacagt gcagacattc ataagctgct gcaagaaaga aagaggaaga gtagtgagtc      6960
     gatgcacgag tacttgctgc agatgagaaa aatagcagca gtcggacatg ttgaagacgc      7020
     ggctgttata agccatatta tgaacggtct ggacataaga aaagagtata agtatgccat      7080
     gtatcgctgt aagaccttca gggccatgaa agaagagttc gatatctatg atcgtttgaa      7140
     catattggag aagaagggca ataacgaaca gcataagacg agtttcaagc agcaaagtgg      7200
     gcaaagcggt aaaaaagaat attgctttaa ctgtggatca ggagaacaca aacgcaaaga      7260
     ctgcaaagcc gaaacgaagt gttttaactg caatcagaat ggtcacattt cgcgtaactg      7320
     tccttatgaa gctgataaag ttgataaagt tcgcgtcatt ttggatcgca gtcgcatgaa      7380
     agaaattcaa ataaacggca ttgtagttga ctgtcttgtg gacacagggt cagatgtaac      7440
     cataatcaaa gagagtatgt tgaagaccat gaaaaacgtt aaacttttga agtgcacaac      7500
     tatgttgcgc ggtctgggtc agatatcaac aaagcctgtt ggatacttta atgcagaagt      7560
     taccgtggat aacttgcaga ccacacagaa gtttttagta gtccccagta gccagattga      7620
     tttcgacgca cttttggggc atgatttcat taaaaagttt cgtcgctgat atgcaaggat      7680
     acacgttctt gaagcatgac gcagatcctg tgccaacaga tgagcatgct cttatatata      7740
     atgtaactga agagtcatcc tttgtagctc caccgcaata tcgaaaagac gttgaacaga      7800
     tgataagaaa cagttaccaa atgcccacag aagttacaaa gcagtctcca attcaactga      7860
     agatagttcc cgacggagta atcaagccgt ttcatcactc accgagtcgt ttatcgacag      7920
     acgaagccag tgccgtaaag aagcaagtcg aagaatggaa cgagcaagga atcgtacgca      7980
     agtcgtcttt aaatgtagcg agcagagttg tcgtcgtgaa gaaaaaagat ggtacactta      8040
     gagtttgcgt agactacagg aagttaaaca gcatggtatt gctggactgc ttcccagtac      8100
     cgatcatgga ggaagtcttg gaaaagctgc agtcggctaa gtggtttacc ataatggacc      8160
     ttgaaaacgg atttttccat gttcctatgg aagagcaaag caagtcgtat acggccttcg      8220
     tcacaaagga gggattattc gagtttaata aagcgccttt cggattcaag aactcgccag      8280
     ctgcgttcat tcggttcgta agctatattt ttcaagaatt aatcaactct gacattatgc      8340
     agctttatat ggacgacata attgtttacg ccgcgtcgcc cgaggtatgc atgaggaaga      8400
     cgaagttggt tctggagaca gctgcgcagt ttggcctaaa gatcaagtgg aagaaatgta      8460
     gcttcatgca gccacgcatt agctttctgg gccatatcat tgaggacggg agaatctggc      8520
     ccggcaaaga gaagacagca gctgtcagtc ggtttgatac gcccaaagac attaaagcag      8580
     ttcaagcatt tctgggactc acaggctttt tcagaaagtt catccctggc tatgcacaag      8640
     ttgcccggcc gctcacgaat ctactcagga aggaagcagt tttcaacatt ggcgaagcag      8700
     agcaacagtc gctacaaacc ttaaagaatc tgcttgtaat cgcacctgta ttacatttat      8760
     actcacgaga agcgccaacg gaactccaca cggatgcatc caaagaaggt ttcggagcag      8820
     ttttgttgca gcagtttgat ggcaatttcc acccgattta ctattgtagt aaaaagacta      8880
     cacaagctga gtccaaacgt cacagttact atttggaggt caaagctgca tacctcgcac      8940
     tcaagaagtt tcgtcactac ctgttgggga tcaaatttga tcttgccact gactgtgcgg      9000
     cgtttaagca gacaacaacg aaagcagata tacccagaga agtttcccag tggattctgt      9060
     atatggagga ctttacattc aaagtagtac accgcccagg ggacagaatg agacacgtgg      9120
     actgtctcag tcgttttccg cagacatgca tgttcgtgac gacggagcta acagctcgga      9180
     taaagaaagc acagcaggat gacgatttca tcaaagccac agttgagatc ctgaagcagc      9240
     acccatatca agactacaag ctaaaaggag gtcttctctt caaatctgta aatggcaatg      9300
     acgtattggt ggttccaaag ctgatggaaa gggaaatcat tcaaggatcg catgaagttg      9360
     gtcatttctc tacagcgaag acaatgcact cagttcagca gcaatactgg attccgcacc      9420
     ttgaacggaa agtaaataag ttgattacta attgtatcag ttgtataatt ttcagcaaaa      9480
     agttgggaaa acaagacggc tatcttcatt gcattgacaa gggtgacaca ccactataca      9540
     cgctgcacgt tgatcatttg ggaccaatgg atgcgacagc caagcaatac aagtacattt      9600
     ttgctgtggt agatgcattc tccaagtttg tgtggctgtt cccaactaag tcaacaggtc      9660
     acgaagaagt tgtgaagagg ctgagagatt ggtcatttgt gtttggtttt cccaagcgca      9720
     tagtcagcga cagaggagca gcgtttacat ccaacgcatt cagcgagttt ctcaacgaga      9780
     acaaagtcga acatgtgtgt acaacgacag gtgtggcgag aggcaacggt cagattgagc      9840
     gggtgaaccg ttcaattttg ggtatcatcg caaagctctc agctcaggag tcaacgagtc      9900
     gccattcgag gtcatgtttg ggacaaagat gcacagacaa gctgaaagtc gactattgga      9960
     ggttctcaac gaggagttgg ttacgcagtt taacaacgag cgccaagaac tgcgtgacca     10020
     agcgaaacaa aacattgcga aggcgcaaga ggtgtacaag cgcaattatg ataaaaaacg     10080
     acgacctgag cacggctaca gactaggaga catggtcgcg atcaagagga cgcagttcgt     10140
     cgcaggacgc aagttggcca gcgagtatct aggcccatat gaagtcacca aggtaaagcg     10200
     gaacggtcgc tacgacgtca gaaaggtttc tcaagtcgag gggccaaaca ccaccgcaac     10260
     gagcagtgac aatatgaagc tatggcgttt tttctcagag aacgaggata tattatcatc     10320
     tgggacagat gaagatgagc aggagggccg aa                                   10352
//
ID   Gypsy12-I_Dya repbase;    DNA;    INV; 4402 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12_Dya;
KW   Gypsy12-LTR_Dya; Gypsy12-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4402
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1085-1085 (2009).
XX
DR   Genome; chr3R; Positions  208022  203621.
XX
CC   Positions [1995-2501] - Reverse transcriptase
CC   Positions [3555-4106] - Integrase core
CC   'TACA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1659..2564,2568..4385)
FT                 /product="Gypsy12-I_Dya_1p"
FT                 /translation="MQLIIGEQLCLQAEIVFNCNGLQVRKNKRNNKQNFLN
FT                 ICVEVDNELFDINEAASEYAKQEVRELISNYEPVKTKTTNVEMRIVLNDKA
FT                 PIFSRPRRLAFSEMHIVDEQIKEWLENDIIEESTSEFTSPIVLVKKHDGSV
FT                 RLCVDYRRINKVIVKDHFPLPLIEDQLDRLQEAKIFSTIDLKNGFFHVPVA
FT                 ELSRKYTSFVTHREQYQFLKVPFGFSNSPGVFQRHVNAIFRDLSRRGIALP
FT                 YVDDIIIPAKTEQDAVQNLKEVNATCKDYGLQLNLKKCNFLKTRIQFLGHV
FT                 IENRKIYPSPKIEAVSKFKMPQTIKQVESFLGLTGYSRKFIPNDAGIARPL
FT                 TELTKKNTRFRFDLDEENAVNILKKLLTENPVLSIYNQTYETEVHTVASID
FT                 GFGEVLLQMNVDDGQLHPVYFMSKKTTDAQRKYSSYELEILAVIEALTKFR
FT                 VYLLGIHFKLVTDCNAFTKTLEKQSLCTRVARWILFLQEYNYTVEHRSGVR
FT                 MKHVDALSRYPVMLIKGDSISTALKDAQARDEKIRAIKEVLSDENKVYDDY
FT                 FLKRGVLYKLVGDDELVIVPNEMQKRVIISSHDRGHFAAKKTNCREFCIPH
FT                 VEDKIKKYIECCIPRILTDHKRGKQEGLLHPLQKEDVPLFTYHIDFLGPLE
FT                 STHKDYKHILAVIDSFTKFCWLYSTKSTTANEVIVKLSNQSVNFGSPAFII
FT                 SDRGSAFTSQDFVKYCEDEGIKPVKTTTGLPRVNGQVERLNSIIISVLSKL
FT                 SVDDPTNGINTTAFELLVGIKMRTKDDLQIRDLINKEAVAVFNEERNELRV
FT                 KAKTQILKLQNENKKDYNLRRKQARRYDIGDLIAIKRTQFGSGLKLKPKFL
FT                 GPYKVVKVKYNNAYDVQKVGNSDGPKNSATCAEYMKPWPIGNDDSDDDEAF
FT                 GSKA"
XX
SQ   Sequence 4402 BP; 1553 A; 757 C; 981 G; 1111 T; 0 other;
     ttttgggcgc tcgtccggaa ttgagcaaat gtgaacggaa ttgagcaaat gtgaacggga        60
     ttgagcaaat gtgaacaaaa ttaatgatat taaacaagag ttgaacgtgt aaagcaaaaa       120
     agtacagtcg caattttttt ttaccataat ggcgtgttta aataatttca taagtgctag       180
     tttacgctca agtaagaagg agagcattgc tgcactgcat aagtttgtgt tcgagagtga       240
     aggaaacaga agaatcgcca aagactacgg gaatttactg gtttcgattt tgccgaaaat       300
     gaccagagat atggtgcaaa gaaggaatac gcagaagata atttgacgca ggttgacctt       360
     gtggcaatat gtaacgtgct aggcataggg tacagagacg aagatttgca tatacacatt       420
     ttccgcaact tgaagaagaa cagtttactg tcgtcaaccg aagccgacga aacagacgat       480
     gaaacagaca gtgaagcaga aaacgttgta ttccagacgc cgaacagagc aacgaacgcc       540
     gaaagaagtg atgtagaaat gtacaaggaa tagacgagat gaataccagg cgcaacgtat       600
     taactgaaaa cgacagtatg tcgacgccac gctttgcgat cagttttcgc gacgttgaag       660
     agagcatacg cagttatgat ggcactaaca gtattccaat cgaagtatgg atagaagagt       720
     acgaagagca agcgacgctt atgtattgga atgacttcca gaagtttctg tttgcaaaaa       780
     aaaatcactt aaaggaattg caaaattgta tgtgttgagc gagagaggtc taaattcgtg       840
     gaattctctc aaagaagcat tgctatccga atttaagtca agtgtcagca gcaagctagt       900
     tcacgagcaa ctcgcgcaaa cgaaacgtgg caacaacgag tgtgttttcg agtactttta       960
     tagaatgaaa aatattgctt ctagaggtaa aattgcagat gacgctttca tacagtattt      1020
     aattgacggc atcgacgaaa aaagtgtaaa caaatcaata ttatatggtg ccaaaaatat      1080
     gagtcaattt aaagacaaac taaagtgttt cggaacaatg atagcaaagg aaaatcagag      1140
     tgagaaagac agatcgaagc gcaatgagaa cattgtgaaa gagaaagaca gaaaaaatca      1200
     gaatgcaaac aaagacgcga aaaaagagct gaaatgctac aactgtggtg aaaaaggaca      1260
     tgtgttgaat aactgccaga ataaagaaaa aggcagaaag tgttaatcag tacggacata      1320
     tttctaaaga gggcgcaaat attgacaaaa atgttttaaa cacgaacact cgcagtttga      1380
     tttcaaaaaa cgatttgacc agcaaagaag tttatattgc aaataaaaag tgtacggcgt      1440
     tattcgatac gggtagtaaa ttcaacatca tacgggaagg tttttattgt gatattggaa      1500
     agccgtagct ggaaagctgc aatgtcgttc taattggatt cgggagtgac cgcgactcca      1560
     ataaaataaa accaattgga caatttaaac aacgaattct gattgatgaa gaggattatt      1620
     tgttagattt ttacgtcgtt ccaatcaaat ttcttgatat gcaattaatt atcggagaac      1680
     agctatgttt acaagcagag attgttttta actgtaacgg cttacaagtg cgaaaaaata      1740
     aaagaaataa taaacaaaat tttctaaaca tttgtgttga agtggacaat gagttgtttg      1800
     acattaacga ggctgcgagc gaatatgcca agcaagaggt gcgtgagcta atttcgaatt      1860
     atgaaccggt caaaacaaaa acaacaaatg tagaaatgcg tattgtgcta aatgataaag      1920
     cgccaatttt ctcacgtcca cgcagactag ctttttcgga aatgcatatt gttgacgaac      1980
     agattaaaga gtggcttgag aatgacataa ttgaagagtc aacatccgag tttacaagtc      2040
     ccatagtact tgtaaaaaag cacgacggtt ctgtaaggct gtgtgtagat tatcgcagaa      2100
     ttaacaaagt aattgttaaa gaccatttcc cattaccgct cattgaggac cagttggatc      2160
     gtctgcaaga ggcaaaaata ttcagtacaa tcgatttgaa aaacggattt ttccacgtac      2220
     cagttgctga actcagcaga aaatatacgt catttgtgac acaccgagaa caatatcagt      2280
     ttttgaaagt accctttgga ttttcaaatt cgccaggcgt ttttcagcgc cacgttaatg      2340
     cgatatttcg ggatctgtca cgcagaggaa tcgcattgcc ctatgtagat gatattatta      2400
     tccccgctaa gacggaacaa gacgctgtac aaaacttgaa ggaagttaat gcgacgtgca      2460
     aagattacgg tctgcagctt aatttgaaaa aatgcaattt tctgaagacg cgcattcaat      2520
     ttctgggcca tgttatagaa aatcgcaaaa tttacccctc accatagaaa atcgaagctg      2580
     tatccaaatt caagatgcca caaactatta agcaagtaga aagttttttg ggcctgacgg      2640
     gctattccag aaagtttata ccaaatgacg caggaatagc tagaccttta actgagttga      2700
     caaagaaaaa cactagattc agatttgatt tggacgaaga gaatgcagtt aatattttga      2760
     aaaagttact aactgagaac cctgttttaa gtatttataa tcagacttac gagacggaag      2820
     tgcatacagt tgcgtctatt gatggattcg gagaagtttt attacagatg aacgtcgacg      2880
     atggtcaact gcatcctgtg tattttatgt caaaaaagac cacagatgca cagcgtaaat      2940
     acagcagcta tgagttagaa atattggcag tcatcgaagc tttgactaag tttagggtgt      3000
     atttgttagg cattcatttt aaactagtaa cagactgcaa cgcttttacg aaaactttag      3060
     aaaaacaaag cttatgcacc agggtggctc gctggattct ttttctacaa gaatataact      3120
     atacagttga acatcgatct ggcgtgagaa tgaagcatgt cgatgctctc agccggtatc      3180
     cagtgatgct cataaaagga gatagcataa gtactgcttt gaaggatgcg caagcacgcg      3240
     acgagaagat aagagccatc aaagaagttc taagcgatga aaataaagta tacgatgact      3300
     actttttaaa aagaggtgtg ctgtacaaac ttgtaggtga cgatgagctg gtaatagtgc      3360
     caaacgaaat gcaaaagcga gtaattatca gttcccatga cagaggtcat tttgctgcaa      3420
     agaagacaaa ttgccgagaa ttttgtatac cacacgttga agacaagatt aaaaaatata      3480
     tcgagtgctg tattccacgc attttaacgg atcacaaacg aggcaagcaa gaaggactac      3540
     tacacccact ccagaaagaa gacgtcccat tgtttaccta ccatattgac tttttgggtc      3600
     cgctggagtc aacgcataaa gactacaaac acattttggc cgtaatcgat tcttttacga      3660
     aattttgctg gctctattct acgaagtcaa ccacagcaaa cgaggtgatt gtgaagctca      3720
     gcaatcaaag tgttaacttt ggcagcccag cattcattat ttcggataga ggctcagcat      3780
     tcacatcgca agactttgtg aaatattgcg aggatgaggg aataaagcca gtgaagacga      3840
     ctactggctt gccaagggta aacggacagg ttgagcgact aaattctatt atcatttcag      3900
     tactctcaaa gctaagtgtc gatgacccca cgaatggtat taacacgacg gcttttgagc      3960
     tactggttgg tatcaaaatg agaacgaaag atgatcttca gatacgagac ttgataaaca      4020
     aagaggccgt ggcagttttc aatgaagaac gcaacgagtt acgagtaaag gctaagactc      4080
     agatattgaa gctgcagaac gagaacaaga aggactacaa tcttcgacgc aagcaagcaa      4140
     gacgatatga tattggcgac ctaattgcta ttaaacgtac ccagtttggt agtggcctaa      4200
     agctgaaacc taagtttttg gggccttata aagttgtaaa ggtgaagtac aacaacgcct      4260
     atgatgtcca aaaagtaggc aacagcgatg gaccaaagaa ttctgcaacg tgcgcggaat      4320
     atatgaagcc atggccaatt ggcaacgatg acagcgatga cgatgaagca ttcgggtcga      4380
     aagcttagtc agaatggccg aa                                               4402
//
ID   GYPSY12-LTR_AG repbase;    DNA;    INV; 806 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY12-LTR_AG is an LTR of retrotransposon GYPSY12_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY12_AG; GYPSY12-I_AG; GYPSY12-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-806
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY12_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 167-167 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY12-LTR_AG is a long terminal repeat of GYPSY12_AG
CC   (its internal portion is deposited as GYPSY12-I_AG).
XX
SQ   Sequence 806 BP; 321 A; 190 C; 133 G; 162 T; 0 other;
     tgtagcatgc acatgcacat gctatactgt ctataatcaa ttcacacgca attctcatca        60
     cacttaataa acacaaattg tcaacaccac acaacacaca aaaaaggata aaataaccac       120
     tcaagaaatt aacacaaccc aaaccacata aataacctta cgccaggaat tgtaagtcag       180
     cagaaaaacc cttgtccaaa aacacttaaa aacacacaac ccgcacacag ccccgtaggt       240
     gcgaaaacag cagaaaaaca ttacccagca caaaaacgtt tcaagtgcgt aaagtgtaaa       300
     aaacacagca ttgcataata gcaaccaaca gttaataaat aatgaaatag gagacaccgt       360
     acctcgtgtg tacaaacaga accgttaatc gtaagcgtag gaaacaaaac accacgtaag       420
     cgccagaacc cagaactgac cttacagaat aattgcaacc atatgttaac cgaaaaacct       480
     aaccctcagc ataaccgaca caaagcgaaa gtaaacgcaa aatcgaattg aagaaaggta       540
     ccgtataaat aaagatgcaa gatgagacca ggacacacag gcagagacag ttagaatcac       600
     agtcacgcac agtacgtaca gttgtaaagt ggtgctgcta agtcttggtc ggtcaagtct       660
     cgatttgcaa acaaagtgaa atgtgtattt aattcagttg tgtttgtccg aaacctccac       720
     catcgtgctt acaaatatac ctgaagagtg atgtctatag tatggcatcg ttgaactatc       780
     cgtcgcgtcc gaaccaactt attaca                                            806
//
ID   Gypsy12-LTR_Dpse repbase;    DNA;    INV; 579 BP.
XX
AC   Unknown_group_699;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12_Dpse;
KW   Gypsy12-I_Dpse; Gypsy12-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-579
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1086-1086 (2009).
XX
DR   Genome; Unknown_group_699; Positions    3292    3870.
XX
SQ   Sequence 579 BP; 206 A; 89 C; 121 G; 163 T; 0 other;
     tgtaaaggac agtgtatcaa gcagttaaca ctatcccatc taaattaaca tttgaactta        60
     agataccatc gataagacct taccgatata accagactta accgatgttt aaaagaccta       120
     gccgataagg ggttatcgat atgggagtcg gttgttggaa gtagaagcag aaagttgaac       180
     aaaaagtcgg aagaacagaa tcattaattg cacatcttaa atcaaacact ttgtactctt       240
     tttcgatcaa aacattatta ataaacgata ctttaatatt aatcttacat ttgggggctc       300
     gtccgcgtcg aataaagagc tcagagtgtg tgaaaaagaa aaacagaaga aagcagaagc       360
     tgatgcaaga agaggattgt tgaaaagttg ttaaagttgt tgtttgtagc tacataaagt       420
     tgtaaagttg ttgttggtgg ctataaacat taagttgaac aatcaaaatt ctgtgagcat       480
     aacagtagac acggatttta ataaaagatc agtcgtttaa ttcggttgaa aaattgtgaa       540
     attcattgtc gcgtcgcagc gtcgccttgc ccgtgcgca                              579
//
ID   Gypsy12-LTR_Dya repbase;    DNA;    INV; 354 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12_Dya;
KW   Gypsy12-I_Dya; Gypsy12-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-354
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1087-1087 (2009).
XX
DR   Genome; chr3R; Positions  203620  203267.
XX
SQ   Sequence 354 BP; 118 A; 67 C; 83 G; 86 T; 0 other;
     tgtgggattg gtttttggct gtttacccta atcccactag tatgaaacat ccctagacaa        60
     cgacaacgac gataacaacg acgagatgaa gatgatggcg aattagcgag gtggcgaatt       120
     cgcaaacacg acgatcaacg aggagcaaaa gcgcaacgct acgagggcga agtgctttac       180
     gacagcggta gagagagagt tgttttttgc tcggagaaga aggaagttgt gcgttctgcc       240
     tgtgtggcta cgagatcgac aacaatacaa cgacggtgtc gattaatttc aatatcctat       300
     attatttgtt acaaaattca aataaaactt atattataat aataaaaccc caca             354
//
ID   Gypsy12-NVi_I repbase;    DNA;    INV; 2989 BP.
XX
AC   AAZX01024254;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12-NV;
KW   Gypsy12-NVi_LTR; internal portion; Gypsy12-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2989
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1142-1142 (2007).
XX
DR   Genome; AAZX01024254; Positions    8418    5430.
XX
CC   Positions [2169-2651] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           9..2972
FT                 /product="Gypsy12-NV_I_1p"
FT                 /translation="MFLNVTINSKRIRMEIDTGVYATIFSEKVKNEFFNDL
FT                 SLSQTKHSLEDYVENVLKPVGSLENLQVTLNDKTIKLGCFVLPGKGPPLIG
FT                 RQWLAAFGLWPLMANSTNSISLNKIQDCNIPSIREQLVIEFKLLFGDTPSL
FT                 FNKGKLKIYLKENAKPIALKARHVAYAMKPLVEDEISRLVRLGHLVPVESS
FT                 EWATPIVIVNKSDNTIRICGDYKLSINEYIIVNKHPLPRIEDVFAAMQGGK
FT                 KFTELDLAHAYMQFEVEESSQQYLTIATHLGLYRYTKMPEGISTCPGDFQT
FT                 FIENTIRGVKNTTAYLDNIYVTGSTYEEHLENLKQVCTRLQESGLRVRPEK
FT                 CKIIKKKIELLGFAIDKDGLHKSSSKVKAIVEAPKPENAKQLLSILGLINF
FT                 YERFLEHRSDKLKPLYDCANSKEFFWSEACDNAFKVIKEELISPRVLAHYD
FT                 PNEQLVLACDASDYGLSAILSHKYKDGSERPIAYASKRIPKKEMHRAIIDK
FT                 EAAAIVFGFKKFYDYIFGKEIILRTDHEPLKRIFGPKTGIPLTATSRLQRW
FT                 AYLLSGFKYKIEHIKSKDNGNCDVLSRLPIEDDSDVFESNYTAINYITSEL
FT                 DILDSNAIAAETKSCKVLSKIMMYITSDWPSYDKLTDHEKKYYSKRTEFFV
FT                 DENCILWGHRVVVPMSLQPFVLKELHLSHLGIVKIKMLARSYVWWPGIDND
FT                 IEQLVNSCKVCLEERKKPPNIPLTPWPWPNKAWSRIHCDFLGPFMGHMYLV
FT                 VIDAHSKWPEVIDFHNNTKAEKLISKFRDIFARHGLANHIVTDNGPQFTSD
FT                 LFQNYLKKLGIKHTFSPPYHPATNGAAENFVGIFKDKVNKIVKGGRALEDA
FT                 INIFLFDYRSVPHSTTGKSPAFLMTKREMRTRFDSLRPRTENTVYEKQHAQ
FT                 IVQRKGSRRVSLEEGDTIMIDNYGKGDKKIEGTIVKQLSPSTYDVQIKPDK
FT                 ICKRHADQIISVAPGKKTVRRSERLKNKCKVSS"
XX
SQ   Sequence 2989 BP; 1069 A; 535 C; 605 G; 780 T; 0 other;
     aaaaaccgat gtttttgaac gtaacgatta attcaaagcg tattcgaatg gaaatcgaca        60
     cgggcgtata cgcaactatt ttttccgaaa aagtaaaaaa tgaattcttt aatgatttaa       120
     gcctctcaca aacgaaacat tcccttgaag actacgtaga aaacgtatta aaacctgtag       180
     gctcgctaga gaatttgcaa gtaactttaa atgataaaac gattaaacta ggatgtttcg       240
     tcctacccgg taaaggtcca ccgcttatag ggagacaatg gttagcagca ttcggtttat       300
     ggcctctgat ggcaaactca acgaattcta taagcttgaa taaaatacaa gattgtaata       360
     taccaagcat acgcgaacag ctagtaatcg aatttaaatt actgttcgga gatacaccaa       420
     gtttattcaa taaaggtaaa ttaaaaatct atttaaagga aaatgctaaa ccaatagccc       480
     taaaagcgag acacgtagct tatgcgatga agccactagt ggaggacgaa atatcacggt       540
     tagtacgttt aggtcactta gtaccagttg aatcgagtga atgggcgacg cctattgtaa       600
     tcgtaaataa aagcgacaac acaattcgca tttgcggaga ctacaagtta tcgataaacg       660
     aatatatcat tgttaataag cacccgcttc cgcgtatcga agatgtgttt gcagccatgc       720
     aaggtggaaa aaaatttaca gaattagatt tagcgcacgc gtatatgcaa ttcgaggtcg       780
     aagagagtag tcaacagtat ttgacgatag caacgcattt aggcttgtat cgatatacta       840
     aaatgccgga aggtataagt acttgcccgg gtgattttca aacatttatt gagaatacta       900
     taagaggtgt taagaacact acagcttact tagataatat atatgtaacg gggtcaactt       960
     atgaagaaca tttagaaaat ttaaagcaag tatgtacacg tttacaagaa agtggtttgc      1020
     gagttcgccc agagaaatgt aaaattataa aaaaaaaaat tgaactttta ggttttgcta      1080
     ttgataaaga tggactgcat aagtcgagct caaaagtgaa agcaatagta gaagcaccaa      1140
     agccagagaa tgcaaaacaa ttgctatcta tattaggatt aataaatttt tatgaaagat      1200
     ttttagaaca caggtcagat aaattaaaac cgctgtatga ctgcgcgaat agcaaggaat      1260
     ttttctggtc cgaggcatgc gataacgctt tcaaggttat taaagaagaa ctaatttctc      1320
     ctcgcgtact cgcacactac gacccgaatg aacaattagt tttagcttgc gatgcctccg      1380
     actacggctt atcggcgatt ctatcgcata aatataagga cggatcagag cgacctatcg      1440
     cgtacgcgtc gaaaagaatt ccaaaaaaag aaatgcatcg agccatcatc gataaagagg      1500
     cagcagcaat cgtattcggt tttaaaaaat tttatgatta tatttttggc aaagaaatca      1560
     ttttgcgaac agaccacgag ccattaaagc gaatttttgg gcctaagacg ggaatcccat      1620
     taacagcgac tagtagattg caaagatggg catatttatt gtcaggattt aaatacaaaa      1680
     tagagcacat taaatcgaaa gacaacggaa actgtgatgt gctatctaga ttgccgatcg      1740
     aagatgattc ggacgtattc gaatccaatt atacagcaat taattacata acaagcgaac      1800
     tagacatctt agatagtaat gcgatagccg cagaaactaa atcatgtaag gttttaagta      1860
     aaataatgat gtacataaca agcgactggc cgtcttacga taaacttaca gatcacgaaa      1920
     aaaaatatta ttcgaaaaga acggaatttt ttgtagacga aaactgtata ttgtggggcc      1980
     atcgagtcgt ggtaccaatg tcattgcaac cgtttgtatt aaaagaacta catttgtcac      2040
     atttaggaat cgttaaaata aaaatgctag cccgatccta tgtatggtgg cccggtatcg      2100
     acaacgacat agaacaatta gttaattcct gtaaagtctg cttggaggag aggaaaaagc      2160
     caccaaacat tccattaaca ccatggccgt ggccgaataa agcgtggagt cgcatacatt      2220
     gtgactttct aggaccgttc atgggtcata tgtacttagt tgttattgac gctcactcca      2280
     agtggcctga agtaatcgat tttcacaata atactaaggc agaaaaactc atttcaaagt      2340
     ttcgcgatat ttttgcacga catggtctcg cgaatcatat tgttacggac aatggaccgc      2400
     aattcactag cgacttattt caaaattact taaaaaaact cggtatcaag catacgtttt      2460
     ctccacccta tcatcctgct acaaatggag cagccgagaa ctttgtagga atatttaagg      2520
     acaaagtcaa taaaattgta aagggaggaa gagcgttaga agatgctata aatattttcc      2580
     tattcgatta ccgtagcgtt ccgcacagca caacaggaaa aagtcctgcg tttttgatga      2640
     cgaagcgaga gatgcgcacg cgcttcgact ctttgcgacc tcgcacagaa aacactgttt      2700
     acgaaaaaca gcacgctcaa atagtgcagc gcaagggttc tcgtagggta tcactcgaag      2760
     aaggagatac tatcatgatt gataattacg gtaaaggtga taaaaaaata gaaggaacca      2820
     tagtaaaaca attatctcct tctacgtatg acgtccaaat aaaacccgac aaaatatgta      2880
     agaggcacgc ggatcaaata ataagcgtcg cgcctggaaa gaaaactgta cgtcgatccg      2940
     agcgtttaaa aaacaaatgt aaagtgtcat cttaaagagg gaggaattg                  2989
//
ID   Gypsy12-NVi_LTR repbase;    DNA;    INV; 1188 BP.
XX
AC   AAZX01024254;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12-NV;
KW   Gypsy12-NVi_I; Gypsy12-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1188
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1143-1143 (2007).
XX
DR   Genome; AAZX01024254; Positions    5429    4242.
XX
SQ   Sequence 1188 BP; 441 A; 221 C; 257 G; 269 T; 0 other;
     tgatgtatgt accataatta gtacaactgc cgtattattt aggcagacta tataagcgcg        60
     tcgtacgcag tatgtaaaca caaggctcag cagtcgctcg caggcgttcc aagcgagaac       120
     atctcttctt attgtaacac cctaataaag cttacctata ttctaatata tcaactgtat       180
     ggttacatta ccgtcctaca ccttccatgc gatatacaac actggcgacg aggatataaa       240
     aggattacgc gtgtacagtg cagtgacggt ataaagcgaa atcgcatcac gtaaaaattt       300
     ttattttgta ttcgatcacg gaatgcgtat tcgcgaagtt tacgttgaac tatacgtatt       360
     cgaaagtgca agcagtattc gtgtagagtg aaagtattcg ttgtaaatga gcgacggaca       420
     gcaaacaaaa gtattggtcg gctgggtata caatctacgt aaagatcaag tcgaagaaga       480
     attaaaaaaa cgtaacgtcg acttcgatga aaactcgaat ctaaacgagt tacgtaaatt       540
     attagcgcag acgctaagat cagaaaaaaa tttacaagac gagcaagtag accagaaaga       600
     ggaaaaccca agccacgaaa acgtacacga agaaacagaa acagaaagct cacactccga       660
     tacagagtca gaaatgtcgg acacaccgaa actagaattc cgtctagata aaggagactg       720
     ggaaacgttc gcagatcgat tagaagtata tttcttggcg aaaggtactg tagacaataa       780
     aaaagtagct accgcgctta cgaaattcga tgaagaggct ttcaagctac tcaaaagcct       840
     atgtgcacca aaaaaaccaa tagaattaac atatgaagag ttaacgaaaa tgatgaaaga       900
     gcaacttaac ccggccccat ctgaagtaat ggagcgttgc aattttaata gagcgaagca       960
     agaacaaacg gaatcgatag cggatttcgc agcgagatta aaaaaattag cattgaattg      1020
     caacttcaaa gatcaactcc aaacagcatt gagggatcaa ttggtttgtg gattgaagga      1080
     tcatgaaaca agagttgaac tttttaagaa gacgagttta acattcgaca cggcattcac      1140
     agaagcagtg gccagagaaa aggcagtgca aaatgcggag ggatcgca                   1188
//
ID   GYPSY12A_LTR repbase;    DNA;    INV; 2280 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY12A_LTR is an long terminal repeat of the GYPSY12A
DE   endogenous retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY12A; GYPSY12A_LTR; GYPSY12_LTR;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2280
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY12A_LTR, a family of LTRs from Gypsy-like endogenous
RT   retroviruses in drosophila.";
RL   Repbase Reports 2(11), 8-7 (2002).
XX
DR   [1] (Consensus)
XX
CC   GYPSY12A_LTR is a long terminal repeat of the GYPSY12A endogenous
CC   retrovirus. There are ~20 copies of GYPSY12A_LTR in the genome,
CC   they are ~87% identical to the consensus sequence. It is possible
CC   that the GYPSY12A_LTR family is a mixture of several young
CC   subfamilies. They can be younger than ~8 Myr deducing from the
CC   the 87% divergence.
CC   The GYPSY12A_LTR consensus sequence is 72% identical to
CC   GYPSY12_LTR from GYPSY12.
XX
SQ   Sequence 2280 BP; 740 A; 391 C; 414 G; 722 T; 13 other;
     tgtagtggcg actgaaactg tagaacaata aagctcccga tagacaaact ttaggaagct        60
     tgcgcttagc tttgggattc taatttaggg tcatattaaa tgcagtatta tgcatcggga       120
     atatactaga cgagatgcaa ctctttatca gctgcacccg gaaagttttg ggataatttg       180
     gttatcgtaa atagagtgac tttcagctga tcgtgatttc cgctgatggc cttaaccccg       240
     gcttgagttt ccgttctatt tcttttctaa tcaaatcgtc gtggagtcaa gtcgtgaaaa       300
     gttcgtgttg ttgtgaaatt ataacctgcg ggcgtggaaa ttttgattag tgctgaaaga       360
     tattattaga gtgagttttc ctcgtcacaa aacggctaaa ttgcttcgct tggcgcagac       420
     cccaaggttc gactggggca gtcacaggtt agtgaatatc gggagtgatc tgttagttga       480
     cgcgaaggct ctaacttttt aggcgggcag aaagatagaa aagaaccgag ccaggcctaa       540
     tggaggccag tgaagcgccc ttcccatcga gtgaccgaag aagagaagca gccgcagcgg       600
     gaccgcagcc gcaaaataaa tcgagaccct gggatgtgta tttaaattaa ttgccagaaa       660
     atgtattaat gaaaatagaa ccccaaagca aggttaagcg cgcgggaaaa tatagctagt       720
     taggagtcaa gaataaacag tgagaagttc ctgatgaagt gaacatataa gagatcttaa       780
     aatatatata taaaaaatgc ttgatgaccc cctgtctgac ctaaccctac atcggaaaaa       840
     ttaaaattta ccgaaccgcc attctgaact gagagaaatg aagttatatt tttaaattat       900
     attttacaaa atttaaaaaa aaagttatag aaatgtgtac tcgaggagaa gccttagttt       960
     atatcacttt tgtgtttttt aattttattt aacttttttg tatttaatgt tttttattat      1020
     ataagctaac ctaatctaat tatttttcta agatgagtac attttcagag agtgcgcgtt      1080
     taaattttcg ggttaaattt gaaaagaaaa aagtcttttt aaagtcgttt gattcgaaat      1140
     tcgagtgaaa gtacatgtgt gttcgtacat tttcaaagta ttcgtggaaa atgccacgct      1200
     ttcatttcag ctcatctgcg ccgggagatc gatctttcgc cgaggagtaa aaatttgagt      1260
     gagttttatt tacaaaaaaa aattttttat tacgataagt tattaatata gtagcgaaca      1320
     aattttaatt tttcaattat acaccggaaa aaatcatgga agananntnn nnrnagtaan      1380
     naaanntgtt ttatttattt ttgaactttg ctttccatgt gatttaaaaa attctaatga      1440
     atacactgca aacaatttat tggaccctaa tgacattgcg gaagtaaaca attaaatatt      1500
     aaaggaataa aatctaaccg aatttactcg caacccactc tcttacgttt tttttctttt      1560
     tcgattaaag aaactgattt aagaaaaata ataattcatg gaaaaagaat atagagaact      1620
     gaaaaaactg aattatggga aaatttaaat aaataatttg ttcctctaaa atatatttag      1680
     caactagtgc tcttcgcatc tatttaatta taactttctt aaataacttt tataaaaact      1740
     ttctttttga atttacgaca aaaacaaaaa cccattgcct tatatttcct caacttactt      1800
     tagtttgtat attataaata ttgttattaa ttattagtca ccaccagaaa tacaaaaatt      1860
     aatctgtaaa attttaaata ctgaactcgg ctgatgtttc tccggacata gggcacctaa      1920
     ggggccattg gagccatgct cttaaggaaa gtggtcatag gtagggtagg gcaatccgcg      1980
     aacacgatta caccggtgtt tcgcaggcaa caaattctca agcttttcct cctcttctag      2040
     aactgtcttc ttccgaatat attaatttgc ttcctccgat tttgtatact agctcctcta      2100
     ttcttttgtc gcaagcacgc tcaattcttg atcttattca ttaatgtctg tagcgaaaag      2160
     gtatctgtac aagcaagacc accacaccca acgccaacga tctagagccg gattctaaag      2220
     cgtgcacccg ccagtacagg ttcccttgcc ttccatcaat ttatttcgtt acacgttaca      2280
//
ID   GYPSY12_I   repbase;    DNA;    INV; 5533 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY12_I is an internal portion of the GYPSY12 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily;
KW   internal portion; GYPSY12_LTR; GYPSY12_I.
XX
NM   GYPSY12_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5533
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY12, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 9-8 (2002).
XX
RN   [2]
RP   1-5533
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   GYPSY12_I is an internal portion of the GYPSY12 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY12_LTR.
CC   GYPSY12_I is flanked by 1% divergent LTRs. Therefore, the
CC   age of GYPSY12 can be estimated as ~0.3 Myr.
CC   tRNA-derived PBS starts at position 35 (there are several
CC   GYPSY12-like subfamilies that have the same feature).
CC   GYPSY12, OSVALDO and ULYSSES retroviruses from D. buzzatii and
CC   D. virilis, respectively, form a distinctive group of GYPSY-like
CC   retroviruses. GAG and POL encoded by GYPSY12_I are slightly
CC   damaged by several mutations. We recovered both proteins
CC   conceptually,
CC   based on alignment with known proteins. GYPSY12-GAGp shares
CC   common structural motifs with GAGs encoded by HIVs. GYPSY12-POLp
CC   is composed of protease, reverse transcriptase and endonuclease.
CC   [2]: updated the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           769..2193
FT                 /product="GYPSY12-GAGp"
FT                 /note="gag."
FT                 /translation="MMGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTC
FT                 HHEFHRECIGNHFKKSEICPRCKLTCRPPAEATERVGRETRSKTKNLLAAT
FT                 VDGGPSTSASGANANEASSSAVSANAALLAMERRLLATLSEKMADLVQNAI
FT                 TSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASSDL
FT                 FDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEALTRQTLNGNFNLLCRNI
FT                 SVLFEGKANDFFWRYHKANGEILWERFCTALRLQFRQSRDDGDIEELIRNT
FT                 KQKPNETFDSFYDTVSELVDQLEQPWTANKLVRVLRNNLRPEIRHEILNLD
FT                 VRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRST
FT                 YEAENDIEAFSLVCWNCRVEGHRYQECIAERRVFCYGCGAANTYKPSCRKC
FT                 SKNFKVGMSKLPVKPKTSNAARNQSTMTDQ"
FT   CDS           2100..5462
FT                 /product="GYPSY12-POLp"
FT                 /note="pol."
FT                 /translation="MFKKLQGRHVEVASQTEDFECRKESVDNDRSVENTDK
FT                 GVSLPLPDVPIKPAIRLLHSKISELRNVCISDSRKTPAILKRKSRSARRLK
FT                 LFWKNVKKCKASLDYISSIPTGPRDPRPFLPIRLLNRLVYGLLDSGASISC
FT                 IGGGLVQAAMENEKFKSLIGEAATADGNSQRIVGLLKIEVEYGDIKKLLKL
FT                 YVVPSLKQDLYLGIDFWKLYDLLPANLXIAEVLSPEPNQQTVVDQHELCEG
FT                 DKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEK
FT                 AMYAEIDRMLRLGVIEESESAWSSPIVMVTKPGKVRICLDCRKVNSFTEKD
FT                 AYPLPQINGILSRLPRAEYISSLDLKDAYWQVPLDPKSRDKTAFTVPGRPL
FT                 YQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESHL
FT                 NVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVAAI
FT                 TNFPLPKSLKSLRSFMGLCGWYRKFVANFATLSAPLTDLMTTKRKFVLTKE
FT                 AIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSGVGAVLVQVSEEGDE
FT                 RPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHAS
FT                 LKWLMSNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVA
FT                 AMDLQEDLIVDFDSEFFQSGDYVKLVETVKENTSNFPDLKVESGFLYRKAE
FT                 HLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKTLERIRRYY
FT                 FWPGLVSDVRAYISACEVCKSTKSPNFTLRPPLGKAPESQRFFQRLFIDFL
FT                 GPYPRSRSGNIGIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGV
FT                 PEVILSDNGSQFRARTFQKLMEQYGVKHTLTAVHSPQANASERVNRSVIAA
FT                 IRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGSTY
FT                 SLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRYNIRSRVV
FT                 SFVEGQEVYRRNFKPSCFQTGYNAKFGPTFVKSRVRKKIGNAYYELEDLQG
FT                 RVVGTYHAKDIRQ"
XX
SQ   Sequence 5533 BP; 1566 A; 1151 C; 1340 G; 1467 T; 9 other;
     gtttagttaa gtataataat aaataagata aagtggcgcc caacgtgtgg ggccttagtg        60
     agtttttttt aaattcatta agactcgcga attaatatct tcaatccttt ctttacattt       120
     tctgtctcac ttccaaaaat ttttgtgttt agaattggtt gcggagtaca cgtcaagtca       180
     atactaatat tgctgactgg ccataactaa gactgakcac aaaaattttc ctwagtgtag       240
     caaaaggaaa tgtggatttt gctgaggaaa acagagtaac agtaacttcg gtctggtttc       300
     tgtcccggtt taatctacac ttccttgakc taactaaacg ctattcaaaa aaaaaaaaga       360
     tcattaacgc aacatgacgg aaaatctttg cgttactcaa gagaaatgca agatcctcat       420
     atagttgacg attttcctct tttttactat tcgttttaaa taagatagag tttcctatag       480
     gttggaatat tcgtgccaag gaaaaggcac gatccaggac ttcactgtta cacctactgg       540
     tggtgttgaa atttagtcta atatsgaata tcttatttta acgaaactcc ttcctctcct       600
     acgccttcgt gagaattttg agccaaaata atagacagcc ctacgaaagg agaacatcaa       660
     gccaagagtt cagttttatt atcttttcgc gccttatcgt tgatattttt acgtataagt       720
     ttattctatt tttgctcgcc atttttgaac cggtaatttt tcgcaagtat gatggggtta       780
     gaccgatcac caactaggaa atctcctagt gtctcaaacc ctgtttgtaa attatgtgca       840
     gccgagatca gcacacaaga tttgtatgtg acaacctgtc accatgaatt tcacagggag       900
     tgcattggca atcattttaa aaaaagtgag atctgtccga ggtgcaaact aacctgtagg       960
     cctccagccg aagcgaccga aagggtaggg agagaaactc ggagtaaaac taaaaatctt      1020
     ctagccgcaa cagtagacgg gggtccttcg acatcagcca gcggtgctaa cgcaaatgaa      1080
     gctagttcaa gcgctgtaag tgctaatgca gctttgttag ccatggagcg taggcttcta      1140
     gcaacgttgt cagagaagat ggctgattta gtacaaaacg ctatcacctc aagcatgcag      1200
     cgaataatgc ccactccgag tccagctgta gtcgttacag ccagtgaaat gtcmgctgat      1260
     cacccaaatg catatgagag gcagtattta gcatcgccaa atccagttcc ttctccacga      1320
     agcgcttcct ccgatttgtt tgatcggcca gataaagtcg tccacatatt aaatggttgg      1380
     aaaataaaat attctggtgt aggagtgtca gtggacaact ttatatacag agtcgaagcg      1440
     cttacaaggc agacgttgaa tggaaatttc aacttgttat gtagaaacat aagtgtattg      1500
     tttgaaggca aggcgaacga cttcttttgg cgctatcata aagccaacgg tgaaattctg      1560
     tgggagaggt tttgcacagc cctacgactg caatttcgac agagtcgcga cgatggggac      1620
     atagaggaac tgatcaggaa caccaaacaa aaaccaaatg aaacttttga tagtttctac      1680
     gacacggtat ccgagttagt cgaccagcta gaacagcctt ggacmgccaa caaacttgtc      1740
     cgcgtgctaa gaaataacct tcgtcctgag atccgccacg aaattctaaa cttagatgtc      1800
     cgaacggtgt cagagttgag agagatttgt aagcgaaggg aggcattcct ggctgacgtc      1860
     agaagatgca gtagctacgc gaaagatact ccgtttaaac gcgagatctc cgaggtctgt      1920
     cacgagagtg aagatgaggt gaggtcaaca tacgaagctg agaacgacat cgaagctttt      1980
     tccctagtgt gttggaattg ccgagtcgaa ggacaccgat accaagaatg tatagccgaa      2040
     agacgagtgt tttgttacgg gtgtggtgca gcaaacacct acaaaccaag ttgtagaaaa      2100
     tgttcaaaaa acttcaaggt cggcatgtcg aagttgccag tcaaaccgaa gacttcgaat      2160
     gccgcaagga atcagtcgac aatgaccgat cagtagagaa caccgataaa ggtgtgtctc      2220
     tacccctccc tgacgtacca attaaaccgg ctattagact gcttcacagc aaaatttcgg      2280
     agttacgaaa cgtctgcatt tcggattcca gaaaaactcc tgcaattctt aaacggaaat      2340
     ctcgtagtgc tcgacgcttg aaattgttct ggaagaacgt aaaaaaatgt aaagccagtt      2400
     tggattacat cagttctatt ccaacaggac ctcgagaccc tcgaccgttc ttaccgattc      2460
     gcttattgaa tcgcctggtc tacggattgt tggattcagg cgcatcgatt agttgtattg      2520
     gaggagggtt agtgcaagct gcgatggaaa acgagaagtt taagtcktta ataggagaag      2580
     ctgcgacagc agacgggaat tctcaacgta tagtaggact gctaaaaata gaagtggaat      2640
     acggtgacat caaaaagctt ttgaagttgt atgtcgtgcc atcgttaaaa caggatctct      2700
     atttgggaat tgacttttgg aaactatatg acctccttcc tgctaatttg aawatagctg      2760
     aggtattgtc gcckgagccc aaccagcaaa cggtggtgga tcagcacgaa ttatgtgaag      2820
     gtgacaaagc caagttggcc aatgtaatca actgttttcc ttcctttagc caggaagggt      2880
     taggtaagac gaacttggtc tctcattcga tcgacgtggg caccgctagg cctgtgaagc      2940
     aacggcattt ccctgtctcc cccgccgtcg aaaaagcaat gtatgcggaa atcgaccgga      3000
     tgttacgctt aggggtgata gaggagtctg aaagtgcttg gtcttcgccg atcgtgatgg      3060
     tgactaaacc aggcaaagtc agaatttgtc ttgactgtcg caaggttaat agttttacgg      3120
     agaaggatgc atatccgttg ccccaaataa acgggatact gagtcgtttg ccgagagctg      3180
     agtacatatc gagcctagat ctgaaggatg catattggca ggtccctttg gatcctaagt      3240
     ctcgggacaa aacagctttt accgtcccgg gtagaccgtt atatcagttt aaagtcatgc      3300
     ctttcgggtt gtgtaacgcc acgagcacca tgtcacggtt aatggacaaa gtagtgccgg      3360
     ctcatttgag aaacgaggtt tttatctatt tagacgacct actaatagta tcttcttgtt      3420
     ttgagagcca tttgaatgta ctgagggagt tagccctgca gataaagcgc gcgggcttaa      3480
     cgctaaacgt cgccaaaagt cacttttgta tgcgacgagt acgctatttg ggccacatta      3540
     tcggagacgg tggaattcgc acagaccctg aaaaggtggc cgcgattacc aatttcccat      3600
     tgcctaaaag tttgaaaagc ttgcgcagtt tcatgggatt gtgcggatgg tacaggaaat      3660
     tcgtcgcaaa cttcgcgaca ctttctgcac cattgactga cttgatgacc acgaagcgga      3720
     agtttgttct aacgaaggag gcaattgaag cgttcagcaa gctcaaagag tgtcttagca      3780
     aagctccagt cctgtgtagt ccggattttg cgaagccgtt tgccatacat tgcgacgcta      3840
     gcaagtcagg cgtgggtgct gtgctggtac aagtgtctga agaaggtgac gagcgtccta      3900
     tcgctttcgt ttcgaagaag ctgaacaaag ctcaacgaaa ttataccgtc acagagcagg      3960
     agtgtttggc cgcaatagta gctctaaaaa acttcagagc atacgtggaa ggactccctt      4020
     ttaaaataat aaccgaccat gcttcgctca agtggctaat gtccaatcac gatctaaatt      4080
     cacgactggc gcgatgggca ttagctttgc agagattcaa gttcgagatt gaacaccgta      4140
     agggttcttt aaatgtcgtc ccggatacat tgtctcgtgt aaacgaggag attgtagccg      4200
     cgatggactt gcaagaagac ttaattgttg atttcgattc tgaatttttc cagtccggtg      4260
     actacgtaaa gttggtagag accgtaaagg aaaatacctc gaattttcct gatctcaagg      4320
     tggagagcgg gtttttatat agaaaagccg agcacctgac tggagaacga atgcatgacg      4380
     aatacgcttg gaaactttgg gtccccaaag agttggtatc gaagattctg gctcgcgcac      4440
     acgatagtcc gttagctgcg catggtggca tacacaaaac cttggaaaga atacggcgat      4500
     attacttctg gcccggtctc gtttcggacg tgagggctta tattagtgcg tgtgaggttt      4560
     gtaagagtac aaaatctcca aatttcactc tcagaccacc attgggaaaa gcgcctgagt      4620
     ctcagcgatt cttccagcgt ttgttcattg actttctcgg accgtatcct aggtcaagga      4680
     gcggcaacat aggaatcttt attgttctgg atcatttttc gaaatacgtg ttcttgaaac      4740
     ccgtaaagaa gattgattcc agtgtcgtca taaagtatct ggaagacgag ttgttcatga      4800
     cgttcggagt gcccgaagtg atactgtctg acaatggttc ccaatttcga gctaggacgt      4860
     tccagaaact tatggagcag tacggcgtta agcacacgct gaccgctgtc cactcgcctc      4920
     aggcaaatgc ttctgagcgc gtgaacaggt cagtaattgc tgcaatcagg gcctatctgc      4980
     gtctcgacca gaaggactgg gacgagtttc tcagccgaat atgttgtgcg ttgaggtcgg      5040
     cggtgcattc tagcattggc accagtcctt attatatggt atttgggcag cacatgatca      5100
     cgtcagggtc gacgtattcg ttgatcagac gcctaaatct cctggacgat cgttctctaa      5160
     agttcgaccg gcacgaatct ttcgagataa tgcggaagca agctgttgat cagatgagaa      5220
     acaagcacaa cgagaacgag aagcggtata atatccgttc tcgtgtggta tcgtttgtcg      5280
     aagggcaaga agtttatcgg cggaatttca agccaagctg tttccaaacc ggttacaacg      5340
     ccaagtttgg accgacgttc gtgaagtctc gagttcggaa gaagatcggc aacgcgtatt      5400
     acgagctgga ggatctccaa ggacgagttg tgggtaccta tcatgccaag gacattcggc      5460
     agtaaggtgc ttccagtcgg tctcagccta gtgtgtctat gagtacccta gtctgagtgt      5520
     agcggggggt ttt                                                         5533
//
ID   GYPSY12_LTR repbase;    DNA;    INV; 2386 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY12_LTR is an long terminal repeat of the GYPSY12 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; GYPSY12_LTR; GYPSY12_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2386
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY12, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 10-9 (2002).
XX
RN   [2]
RP   1-2386
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   GYPSY12_LTR is a long terminal repeat of the GYPSY12 endogenous
CC   retrovirus.
CC   [2]: updated with consensus.
XX
SQ   Sequence 2386 BP; 740 A; 448 C; 499 G; 699 T; 0 other;
     tgtagaggcg actgaagcag tgggtgagaa aaatctcgat gaataatcga tagggcggtc        60
     agctgtgaca cactaaagtg aggtcttact agatgtagca agaagtagct agaatatacc       120
     agactggatg caacccttat tagctgcacc cgataagttt ggtataattc ggttatcgga       180
     gaaaagtgtt gttcagctga tcgtggtttc cgccgttggc ccacgcctcg actaatgttt       240
     ccggtttgcc ttcttttcga tctgaacagt caacgcgtca agttgcgaaa gtgcgtcgaa       300
     aaattttaac ttgcggtcat acggaatttt tttttgtcgc gcgaaatatc gaaaatacgg       360
     cgttccttcg cctatagtgg tgcgcgaaat aattccggct tgtgtttccc ggcgatatac       420
     agccgaagag atcggcgttc gtcacggaca tctcgcggcc gcctggccgc caaatcctag       480
     cttcgactgg gtcaaattgc aggttagtga gtttcgaaat attggtgaac cgtagtttga       540
     tacgggaata taatcgcagc cgaaattgaa gcccggaggg ttttcgctgg acaacttata       600
     ctttcgcatc actgcccggg tcccaccatt cttcggagcc gctaccggcg ggcggaagga       660
     gagacggcaa ctgcgccagg cgagtagcgg agcgcctttc cagcaggccg gagcgaagga       720
     ccagccgcag cagcaggaca gcgaccgccc taagccgggg ccatcaggaa ggatcattaa       780
     acaaagaaaa tgcagcctaa gtagagctta gagtgaggtt agggtgaatg gaaaattttc       840
     ttgtgcttga ttggcagtcc agaatgcccg aaattaaatt aaatcaaagt taaatcgagc       900
     aaaatttcta attatacaaa aaaaaaatgc tgaaagccag acctaacctt actagatagt       960
     attacttcaa cctgatcgcc atcttggaca ttgagtggcc gaaattaaaa tttttcctat      1020
     gtagtttaag tttaacgtta agctataaga atatgtactc gaataggaca ctcggtcata      1080
     cggtttaata gttttcttgg atttaaaaaa aaaaaaatga attcttatta gtgattaaaa      1140
     tttttatata gtaagtgatt taacctaagc taattaattg ttttagaaga gttctctttc      1200
     ggaaagtgct catttaaatt ttcgagtagg gaattacaaa agtttgatcg cagtcgtgta      1260
     ttccaaaatt atgcctcctt atagtgtttg tggaaaaaaa agccaccttt tcgtttcagc      1320
     tcatctgcgc cgggagatcg atctttcgcc gaggagtgaa aagttgagtg agtctcattg      1380
     ataaaacttt attttattgg aaatattcgg tagtaaaccg attacatttt gatagaggtc      1440
     atcttatgtt gtatacacac tgcaaataaa aaaagtaata ataatggagt ggcgagagca      1500
     gccatttgaa atataatgag aaaaagacaa aaaaaaaaat gaaaaaaaga tctaaccgaa      1560
     tttactcgcg gctctctctc aaacagaatt aaattttttt tcgttaaaga ttcgttataa      1620
     agaaaactca aaaaaaaaaa ataaatgaaa ttaataattc acagaacgag attatagaga      1680
     gaacgaaaat tattaaagat ttaaatgaaa gctttgttcc ttcctaaaag aaaaaaacat      1740
     atatttagcc actagtattt ttaactttta attgtaatga tctcgaacat cgaatcgaat      1800
     ctacattttc tgatctcgca actgagagaa aaactttgct ttgaattcct ttgagttaca      1860
     ctagtccgta ttttttatat ttacttggtt cctttagtat gtacttattt ttagatataa      1920
     atattgttat taattattaa gcattgattg attttgaaaa tatgaatttc taaaaaccta      1980
     aatgctgact cggctgatgt ttctcctgac gtagggcact aaaggggccg ctagagctat      2040
     gctcttaagg aaagtggtct aaggtagggt agggcaatgc gcgaacacga ttccacctgt      2100
     gtttcgcagg cgaaaaattc tcaaactttc ctcccattct agaactgtcc gcttccgaaa      2160
     gtattaattg gcttcctccg atttttgtat tctagctcct tcattttgtt gttgttgcaa      2220
     gcacgctcaa tttcttaatc ttattaattg ttgtctgtaa cgaaaagaga tctgtacaag      2280
     caagaccacc acacccattg ccatgagcta gagccggcct ctaaagcgtg cacccgcaag      2340
     tacaggtact ccagtcgtcc atccgtttaa ttcgttacac gttaca                     2386
//
ID   GYPSY13-I_AG repbase;    DNA;    INV; 5967 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY13-I_AG is an internal portion of retrotransposon GYPSY13_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY13-I_AG; GYPSY13-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY13_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5967
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY13_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 168-168 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY13_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY13-I_AG consensus was reconstructed after multiple
CC   alignment of 11 copies.
CC   The consensus encodes the 405-aa GYPSY13_AG1p gag-like protein
CC   (pos. 1072-2286) and the 1246-aa GYPSY13_AG2p (pos. 2193-5930).
CC   The sequence of the LTRs flanking GYPSY13-I_AG is deposited as
CC   GYPSY13-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1072..2286
FT                 /product="GYPSY13_AG1p"
FT                 /translation="IKQKKYNNNISITSHSMLLKINQNIIRLKNIEKKLSC
FT                 DRKFRRCLLDHYSGSAKFCFDKIKYYLDSIQETEPVSELKRILKEASDIYA
FT                 NIQSRIQFHQTNKIQVKFKTLAKLAIVFNRWNQNKMETFDIKTATALVQIY
FT                 DGNTDGLENFVDSSNLLKELCPKNPQMLVKFLKTRLIGKARLGLPPNIDDF
FT                 DSLINDIRSRCQEKLNPDKIISQLKSIRQTDTKALCDEVELLSTKLKNVYL
FT                 QLHIPEKVANDMSLKHGINALIEKVHNQETKIVLKAGQFASVSDASEKVLE
FT                 NERNSNGSQILAFNRNYYDNRKFVRNKYPPNTYNRFQPNTNNRWFSNRSPL
FT                 GNNQATSNRYQNQRYPNNSFRKQFPNTNTRRVYNTQAAEEEHFLGVPQALE
FT                 EIIQPTNDGQH"
FT   CDS           2193..5930
FT                 /product="GYPSY13_AG2p"
FT                 /translation="SLQYTSCRRGTFFRGTTGVRRNHSTYKRWSTLAINLN
FT                 ANNFIKIKVEMAMGEISILIIDTGADVSLFKVDKIKPTQQVYAQNRINLTG
FT                 ITTESVSTLATTSTNITFGNASINHTFHIIPAEIDIKADGILGRDFFTKHR
FT                 CVIDYEHWLLNFNCNGVTISHPIEDSINDGFILPLRSEVIRKINLPDLVED
FT                 SIVLASEILPGVFCGNSVVSKQNQYVKFVNTTESNVYIEKDSFKPQIDPLK
FT                 NYIQKNLKFKSSKTNESKIKTLLSKIDSQNVPKYIIPHLEKILSEYHDIFC
FT                 TDNDQIPTNNFYEQSIQLKDNVPCYIPNYKQIYSQSDEIKNQVDKMLKNDI
FT                 KEHSVSPYNSPILLVPKKSGDNEKKWRLVVDYRQLNKKIMPDKFPLPRIDD
FT                 ILDQLGRAKYFTTLDLMSGFHQIPLHKNSRKYTAFSTSSGHYQFTRLPFGL
FT                 NISPNSFQRMITIAMAGLTSESAFVYIDDIIITGCTMQHHLENLIKVFNRL
FT                 RNYNLKLNPEKCIFFQNGVTYLGHNITYKGIYPDESKFETIKKYPVPINVD
FT                 EVRRFVAFCNYYRKFVKNFAELVRPLNNLLKKGATFTWSNECQHAFDTLRR
FT                 SLVSPTILQYPNFEKEFIITTDASDVACGAILSQITDGNDLPIAYASKSFT
FT                 KGEKSKPTIEKELTAIHWAVNYFKPYIFGKKFNVRTDHRPLVYLFNMKNPT
FT                 SKLTRMRLDLEEFDFEVEFVQGKTNTGADALSRIVIDSDKLKHMQKNNANE
FT                 TNDKSLLAVKTRAMTRLNNFKLPPELNEGEKDSITKPTLWQTENPTEVNKL
FT                 LKILSKTEYGKIKITVFNNNYNKELGNTTIHCNEDGSQALESALLKVQQIA
FT                 KEYNRDKITISLEDSLFRQYSFHTIKEIADNAISGLEIIAFIPPKWISKKE
FT                 EIENILENYHMSPSGGHVGQYRLYLKIREKYKWKNMKEEIKNYVRGCKVCK
FT                 VNKIVRHTKEKSAVTTTPLKPFEVVCIDTVGPLPKTNKNHRYIVTMQCELS
FT                 KYIVLIPTENKEANTIARAMVENCILKYGRFLEMKSDQGLEYNNEVLKKVA
FT                 ELLGIKQTFATAYHPETIGSLERNHRTLNEYLRAFTNEHGDNWDDWLKFYE
FT                 FNYNTTPHTDTNYSPYELIFGKKAILPQDLCHGNIEPVYNYDAYFNEIKFK
FT                 LQKSNEIARKNLIEQKERRQIRANSNVNPLIIKIGDAVYLKNENRKKLDPI
FT                 YLGPYIVVKLDNVNCTIKNTNTNKLSTVHKNRLIKG"
XX
SQ   Sequence 5967 BP; 2347 A; 1006 C; 1075 G; 1539 T; 0 other;
     tggcgaccgt gacaagtgtg aaactgtgat gcaaaaaaaa aaaaaaaaaa aaactcgcgt        60
     aaatacgaag ttaattcgcg agtgcgtaat attccttccg gtcagaagaa tattctagta       120
     tctgcgttga tgtttagcgt gaaagagtga gagagtgaag acgagagtgc agcgcaacgc       180
     tacaattgta cgataactcg aactatcgtt attcaaacga ggtgcagtga taaaatatac       240
     gggtttcctg aaaaatcacg aaaattgcac aataactcct gtcgtgtatc gtcaacgaac       300
     caaggtgcag tgaaagagag agtgtatcct ggttataaaa aaaaaaaagt ggccaggaaa       360
     agttatatga atgctagcaa acattcggtg ataaaaaaca aaaaaaaaaa gcagcgatag       420
     ttaacggtac cgtgcgtaaa gtgatctaag tgcagtgacc tcgatcggac aagattatcg       480
     cacgtacgag taagccacat ttcgtaccat cggcgataag catcacagtt tgaaccggca       540
     tgaccttttg cgacaagtga ccaagtgtcg tttgcacgag agagacataa cgttgttgcg       600
     agaagaagga agaacggagc agccgatatc aaacggcaat acagcgtgcg gtgaaggagc       660
     gacggcgaag cagtgagctg tgagagagcg agcagcgatt tgcagtggat aggagcgacg       720
     gtgcagcagt gtgctgtgag agaacgagca gcgatttgca gtggataaag cgagataacg       780
     ctatacttat cgatcgggca gcggtacacg gagtaaggat caagcgaaaa aaagggagaa       840
     agtaaggtag gctacacact caatatagtt gcaatttact catttaaata ttttttgtaa       900
     ttgctcaatt aaattctttt ttatgaaacg tacaatatta ccattttcca ttacaatatg       960
     cacatactat tggggtgtta gtctaaaaaa aagaaaagaa aaaaaaatat tgcaattatc      1020
     tgggtgtcaa aaaaaataat aataataaaa aaaatataaa ataaaaaata aataaaacaa      1080
     aaaaaatata acaataacat ctcgatcaca tctcattcaa tgctcttaaa aataaatcaa      1140
     aatattataa ggcttaaaaa tattgaaaaa aaattatcgt gtgatagaaa gtttcgcaga      1200
     tgtttgcttg atcattacag tggttccgct aaattttgtt ttgataagat caagtattac      1260
     ctggattcaa ttcaggaaac tgaacccgtt tcagagctga aacgaatttt gaaggaagcg      1320
     agtgacatat acgccaatat ccaatcgcgc atacaatttc atcaaacaaa caaaattcaa      1380
     gttaagttta aaactttagc aaaactagct atcgtgttca accgttggaa tcaaaacaaa      1440
     atggaaactt tcgatatcaa aacagccacc gctttggtgc aaatatacga tggcaataca      1500
     gatggtttgg aaaattttgt ggactcttca aatttactaa aggaattatg tccaaaaaat      1560
     ccacaaatgt tggtaaaatt tttaaaaaca agattaatag gaaaggcgcg tttaggactg      1620
     ccgcctaata ttgacgattt tgactcgtta ataaatgata tacggtccag atgtcaagaa      1680
     aaacttaatc cagataaaat aataagtcaa ttgaaatcta ttcgccagac ggatactaaa      1740
     gctctttgtg atgaggttga attactcagc acaaaattaa aaaacgttta tttgcagctg      1800
     cacattccgg aaaaagttgc aaatgacatg tcattaaagc atgggattaa tgctctgatt      1860
     gaaaaagttc ataatcagga aacaaaaatt gttctaaaag caggtcaatt cgcatctgtt      1920
     tcagatgcat cggagaaagt attagaaaac gaaaggaata gcaacggttc acaaatatta      1980
     gccttcaaca gaaactacta tgacaataga aaattcgttc gtaataaata cccgccgaac      2040
     acatacaata gattccagcc aaacacaaat aatagatggt tttccaatag atctcccctt      2100
     ggtaacaatc aggcaactag caacagatac caaaaccaaa gatatcccaa taactctttc      2160
     agaaaacaat ttccaaatac aaatactcgt agagtctaca atacacaagc tgcagaagag      2220
     gaacattttt taggggtacc acaggcgtta gaagaaatca ttcaacctac aaacgatggt      2280
     caacattagc gataaactta aatgctaata actttatcaa aattaaagta gaaatggcaa      2340
     tgggtgaaat aagcatatta attatcgaca cgggagcaga cgtgtcattg ttcaaagttg      2400
     ataaaataaa accaacacag caagtctacg cgcaaaatag gataaactta acgggcataa      2460
     caaccgaatc ggtatcaaca ttagcaacta ctagcactaa tataacattc ggaaatgctt      2520
     ctattaacca cacttttcat atcattcctg cagaaataga tatcaaagcg gatggtattt      2580
     tgggaagaga ttttttcact aaacatagat gtgttataga ttatgagcac tggcttttaa      2640
     atttcaattg taacggtgtt acaatcagcc accctattga agatagtatt aatgatggtt      2700
     tcatattgcc tctacgcagt gaggttattc gaaagataaa tttgcccgac ctcgttgaag      2760
     actctattgt ccttgcgagc gaaatattac caggagtatt ttgtggcaac tctgtggtat      2820
     caaaacaaaa ccaatatgta aaatttgtaa acaccactga aagtaatgtg tatattgaaa      2880
     aggattcatt taaaccacag attgaccctc tcaaaaatta tattcagaaa aatttaaaat      2940
     ttaaaagctc taaaacaaat gaatctaaaa taaaaacatt attgagcaaa atcgatagtc      3000
     agaatgtccc caaatatata atccctcatt tagaaaaaat attatccgag taccatgata      3060
     ttttctgcac cgataatgat caaatcccaa ctaataattt ttacgagcaa tcgatacaat      3120
     tgaaagataa cgtaccatgt tacattccaa attacaagca aatatattct caaagtgacg      3180
     agataaaaaa tcaggttgat aaaatgctta aaaatgacat aaaagagcat tcggtttctc      3240
     catataattc accaatttta ttggtaccaa aaaaatctgg agataacgaa aaaaaatgga      3300
     gattggtagt agactacagg cagttgaaca aaaaaataat gcctgataag ttcccgctac      3360
     ctagaatcga tgatatatta gaccaattag gaagagcaaa atattttact accttggacc      3420
     ttatgtccgg gtttcaccag atacccttac acaagaactc tagaaaatat actgctttct      3480
     caacttcttc aggccattat caatttacaa gactcccttt tgggctgaat ataagcccta      3540
     atagctttca acggatgata acgatagcaa tggcgggact tacttcggag agtgcttttg      3600
     tttacataga tgatattatt ataacgggtt gcacaatgca acatcatcta gaaaacttaa      3660
     taaaagtgtt taacaggcta agaaattaca acttgaagct aaatccagag aaatgtattt      3720
     ttttccaaaa cggtgtgacc tatttaggtc acaacataac atataaaggc atatatcccg      3780
     atgagtccaa gttcgaaacg ataaaaaaat acccggtacc aataaatgtg gatgaagtta      3840
     gaaggtttgt agcgttctgc aattactatc gcaagttcgt taaaaatttt gctgaattgg      3900
     taagaccgct aaataattta ctaaagaaag gagctacatt cacgtggtct aatgaatgtc      3960
     agcatgcttt cgacactctt agaagaagcc ttgtatcacc tactatatta cagtatccaa      4020
     actttgagaa agagtttatc attactactg atgcgtccga tgtagcatgt ggcgctatct      4080
     tatcgcagat aacagatggt aatgacctac ctattgcata cgcgagtaaa agttttacta      4140
     aaggagagaa atctaaaccg actatagaaa aagagctaac agcaatacat tgggcagtaa      4200
     attatttcaa accatatatt tttgggaaaa agtttaatgt acgaaccgac cacagaccat      4260
     tggtatatct attcaacatg aaaaatccta cttcaaaact aacacgcatg aggttagacc      4320
     tggaggaatt tgattttgaa gtggaatttg tgcaaggaaa aacgaacaca ggagctgacg      4380
     cactatcgag aattgtcatt gattcagaca aattgaagca tatgcaaaag aataatgcaa      4440
     acgaaacaaa tgataaatca ctactagcag taaaaacaag agcaatgaca agactgaaca      4500
     atttcaagct tcctccagaa ttaaacgaag gtgaaaaaga ttccataact aaacctacac      4560
     tttggcaaac agaaaaccca acagaagtaa acaaactttt gaaaatccta tcaaaaacag      4620
     aatatggcaa aatcaaaata acagttttca ataataatta caacaaggag ttaggaaata      4680
     caacaattca ttgtaatgaa gatggaagtc aggcgctaga gtctgctctt ctaaaagtac      4740
     aacaaatagc aaaagaatac aatcgtgaca aaattacaat ttcattagaa gattccctat      4800
     tcaggcaata ctcttttcac accataaagg aaatcgcaga taatgccatt tccggtttag      4860
     agatcattgc ttttattcca ccaaaatgga tttcaaaaaa ggaggaaata gaaaatattt      4920
     tagaaaacta tcacatgtca ccttcgggag gacatgtcgg acagtatcga ttatacctca      4980
     aaattagaga aaaatataaa tggaagaata tgaaggaaga aattaaaaat tacgttagag      5040
     gctgcaaagt atgcaaagta aacaaaatcg taagacatac aaaagaaaaa agtgctgtta      5100
     cgactacacc tttaaagcct ttcgaagtag tctgtataga cacagtgggt cccttgccga      5160
     aaaccaataa aaatcataga tacatcgtta caatgcaatg tgaactctcg aaatacattg      5220
     ttcttattcc aacagaaaac aaagaagcga acacgatagc tagggccatg gttgagaact      5280
     gcatattaaa atacgggagg tttcttgaga tgaaatcgga tcaaggcctt gaatacaata      5340
     acgaggtatt aaaaaaggta gcggagttgc tggggatcaa gcagactttt gccactgcct      5400
     atcacccaga aaccataggt tccttggaaa gaaaccacag aacactcaat gaatacttaa      5460
     gagcatttac aaatgagcat ggtgacaatt gggatgattg gctaaaattt tacgaattta      5520
     attataacac aacacctcat acagatacga actatagccc atacgaatta atatttggaa      5580
     aaaaagcaat tcttccccaa gatttatgcc atggtaatat tgaaccagta tacaattatg      5640
     atgcatattt taatgaaatt aaattcaaat tgcaaaaatc aaacgaaata gcgcgtaaaa      5700
     atttaattga gcaaaaagaa agaagacaga ttagagcaaa tagtaatgta aaccccctta      5760
     tcataaaaat aggagatgcg gtttatctaa aaaacgaaaa tagaaaaaaa ttagatccga      5820
     tatacttagg accgtacata gtagtaaagt tagataatgt taactgtaca ataaagaata      5880
     caaatacaaa caaactaagt acagtgcata aaaatagatt aattaaggga tgaaaagcat      5940
     acgcttttca tttctaaagg ggggagg                                          5967
//
ID   Gypsy13-I_Dpse repbase;    DNA;    INV; 7268 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13_Dpse;
KW   Gypsy13-LTR_Dpse; Gypsy13-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-7268
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1088-1088 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   18523   11256.
XX
CC   Positions [6339-6830] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2957..3904
FT                 /product="Gypsy13-I_Dpse_1p"
FT                 /translation="MITQAVRAMQNDLLTQLSEQMAQIIQTNVAAHLQLTG
FT                 RDQHTRNIAPDHSSQGQEAGGGRESAGFYREGRDTPRSLASDLSQRPDKVV
FT                 HIMNGWKLRFSGDAEGISADNFIYRVEALTHATLESNFAMLCSNASILFDG
FT                 KAREFFWRFHKSVVVVRWDVLCQALKKQFRDTRTDVDIREAIRDRKQKEKE
FT                 GFDAFYDAIVQLMDSLESPLSEKSVVDILRRNLRPEVRHELLNIKITSVGE
FT                 LREICRRRESFMEDVRRNYGYQKSVPFRRQVAELVEEHMSDDATEFSEGEG
FT                 EAEIGALALVCWNCHKEGHRYQDC"
FT   CDS           4512..7199
FT                 /product="Gypsy13-I_Dpse_2p"
FT                 /translation="MQVAEICQESHVLIPSQKEELQKVVSEFPSFAVSGLG
FT                 RTSVLSHSIDAGDAKPVKQRHFPVSPAVEKLLYAEVDRMLKLGVIEESDSA
FT                 WSSPVVLVQKPGKVRLCLDSRKVNAVTRKDAYPLPQIDGILSRLPRAMFIS
FT                 SLDLKDAYWQISLDPESRDKTAFTIPGKPLYQFKVMPFGLTNASQTMTRLM
FT                 DKVIPAELRNEVFVYLDDLLIVSDSFESHMKVLRVVAQHVRLAGLTLNVEK
FT                 SKFCMRSVKYLGHIVGEGVIRTDPGKISAMIDFPVPNSLRALRRFLGMVGW
FT                 YRKFIANFASIASPLTDLLKPKCRFVMTPEGRTAFEELKKLLCSAPVLRSP
FT                 DFSQPFFVHCDASKSGVGGVLVQKTPEGDEFPIAFVSKKLNKAQRNYSVTE
FT                 QECLAAIVCINRFRAYIEGHDFTVITDHASLKWLMTQTDLHSRLARWALKL
FT                 QGFNFKIEHRSGRLNVVPDALSRVNEEDLAAVDVGYGQAVDLESPAFQSDE
FT                 YVELVNRIKANDVNLPDLRVVEDRVYRKCDFATGSTLHDHFIWKLWIPQSL
FT                 IPEVLANAHDHPLASHGGIHKTLERVRQFLYWPSLVKDVKAYVLACDTCKA
FT                 TKAPNSVQRPPMGVAPESQRFFQKLYVDFLGPYPRSKSGNIGIFIVLDHYS
FT                 KFVFLKAVKKLTADLVIKYLQQDLFHTFGFPETIVSDNGSQFKSEVFQKFL
FT                 KAHKISHTATAVYSPQSNASERVNRSVIAAIRSYVRSDQKNWDEELSSICC
FT                 ALRTAVHSSLGTSPYYMVFGQQFVSSGETYKVLRALRLLEDKSLAFSKEDS
FT                 LELVRSKALTVMEKQRKKNERNYNLRSREVSYQVGQEVFRRNFKQSNFQAG
FT                 YSAKLGPAYVKARIRKKIGNAYYELEDLQGRSIGRYHAKDLKQ"
XX
SQ   Sequence 7268 BP; 2064 A; 1484 C; 1848 G; 1870 T; 2 other;
     gcctaggtaa gattgagaag ggtaaaggaa aattggacta gtcagataat ttcatccgtg        60
     taggaccggc cattggcgca gtggataccg caaaggagga acgccgcctc gccgtatttt       120
     ctttgcaaag cggcccggat cagcttcgcg gatccaaaga cgcgaggcgt cgaggagatc       180
     gagcgtccaa gggacgccag aaggggtcca gaggagcagc caaagcagcg gtggaaaaaa       240
     attgcaggcc caagtacacg ggcaccgacg tcacgctagc gggggttgag tggtttttgg       300
     ggaagaggaa aaaaaaaact caatcgtttg gttggagagc gagccaaggc agggctatat       360
     agcgtagcta gagcgaaagc aagagcagtc cgagatttgg cggggtcttt cgagtggctg       420
     cgcgagtgat ttttatcgtc gggaaccgat gaagtgattt cggaagggaa aatctaaaac       480
     taaaagaaac cgggaatggc cgagatctct agcaataata ggattcagtg ttaagtgatt       540
     agtgttaata atttaatgag ttaagtaata tttctttgtt aggttttttt gtgcgttaaa       600
     gtctgcgaca gtcggcgaag ggcangcgaa ggaaaggaaa aaaaagaaag ggcgagagag       660
     tttttttgtg gtactcgagt ggaatgagtc gctcaaacta agagtggagc gagcaaagag       720
     tgaatttgcg agtgaggttt ttttgtgtgc ctttgtttta ctcccgattg gagttcactt       780
     tacaggtcca aatctcctcc gggaagcgct tcatcggtgg atatgcggat catcgggtga       840
     gtgagaacga acaagaaaat ttaaccctgg caattccact catgagagaa aagaaaatag       900
     aaatttagat aattacatac ttccccctat tgtttgttcc gtttcttccc cccctttcgg       960
     tctggctgtt gtactgtctt tatacataaa ttccgagata attgttagtt ttattcctca      1020
     tcattattaa gcaattttat tgatattatt ttttttattc tttttacttt ttatgcgtac      1080
     tttatgttga gttatgttta gttttaattt aggaaccgct cagtttttag tcataagtca      1140
     ataaatttta taatgtttta gttcacagtt ttttttgcct tcggctagcc aaatgcccct      1200
     gaggatccca taacgacgca aaggggccat tccatataaa ttgcgaccta ggaatggcca      1260
     aggtagggag ggtcaatccg ccctcaacga gatctgaggc ggggaaaagc gttcggggac      1320
     aggtcggaga aagggccagt tatgtgttca agcaatttta ggtccacctt aactctcgtc      1380
     gtagcacgca taaattttaa cttgttaata atgaagatag gcatcaggtg agaggagggc      1440
     aagatcacca ccccaattag ccgacgagca tcccagccgg gaataaccgc gtgcgccctt      1500
     ctcccactcc ccaacaccca gcctggttcg ttacagttat aagtaattat taatttcatt      1560
     attataaagt tagtggcgcc caacaatggg acccaaaata attggtagaa ccgcatcccg      1620
     atgtggtcaa cgatatcgca gaaacacaca catcaaaaac actttcggtt tttctggcaa      1680
     acgatgtaca tatgtagtgg gcttgagaag agaggcatat acgtttattc gctttattct      1740
     caaactacgg ttgctgcagt atctgggcca gaataccgat cttcatagtc agctaaattt      1800
     tgcaagtcag tcgcatagga tttattgttg agaagttgct agcagcgatc gacaagccac      1860
     ggctgaggac gtagagctta gtaggcgatt aaatacccta cagtaatgga gtccgtagcc      1920
     caacgagtta gacgtttgga aaagcaggga agaagtcttt aaataagtcc accctgacca      1980
     cgaataacga gttttagcaa agacccatcc atagtttaca atagtcatgc ggcagagcta      2040
     gccatcaaac gctcggaaat acagaacaaa atctttaata agagtttgcc tggccacggg      2100
     tgatggaaaa ccagcatacc tgtccgcgga agcaagagtg cgaaggagag taaagaagac      2160
     gaaactgatt agcttcgatt tactcgcact cgagcttgca gtcgttgttt ttgtcttgcg      2220
     gatcggcgct ccaaagcaat gaaacgtttg gttgttgttg cgagggctga ttagcggcac      2280
     aagcagcggt aaattatctt tgttctttct tctcacacca gttccgatat gatttttttt      2340
     caggggaact aagctatgct tgaaggcaaa taaatgtttt ttttgatttc tttatatatt      2400
     gcgattttca caaaatatta ttcctatttt taattataaa ttgttttatg ttttattatc      2460
     agctacaaac gcgtctcaat tcctcaagct gtaagcaaag agtttttatt tttttgtgtc      2520
     ataagaaaaa aaaagttgct agaacgccga aacagctgtc tcggttgaga taggtcatcg      2580
     accggcaaag aattgtgagc actgggaaga aaaaagctag gtgacgtggc gaagggaatc      2640
     aataatggag ggagaacctg taaatccgtc cgtttgcatt ctgtgtgngg aagagtttgg      2700
     atccctgcag ttatacaaga ccaggtgtgg ccacgaattt cataaagctt gcatcgtccc      2760
     ctactcgaag gaaaatgcta aatgtcccag atgtggaaga gtcacttttg agttgcaagg      2820
     cggcgcatcg gtttcgggca cgcaaaccgc caaacagcag gcaggaagca aagaaaaagc      2880
     ttcaggcacc ccagcgacgg gatcagcaaa taataatcca ggttcagctt cagttgatgg      2940
     cgggaatata ggaatcatga ttacccaagc agtgcgagcc atgcaaaacg accttttaac      3000
     ccagttgtcg gagcagatgg cgcaaataat acaaaccaat gtcgctgctc atcttcaact      3060
     gactggccgg gatcaacaca ctcgaaatat agctccagac catagttcgc agggtcagga      3120
     agcaggcgga ggccgagaat cggcaggatt ttacagagag ggcagagaca ctcctagaag      3180
     tttagcttcc gatctgtccc aaaggccgga caaggtcgta cacattatga atggttggaa      3240
     gctacgattt agcggggatg cggaaggaat tagcgctgat aattttatct atagggtaga      3300
     agctctcacc catgcaacgc tggaaagcaa ctttgcgatg ctatgtagca acgctagcat      3360
     cctctttgac ggaaaggctc gggaattctt ttggaggttt cataagtcag tggtagtggt      3420
     ccgatgggat gtgctttgtc aggcattaaa gaaacagttc cgagacactc gcacggatgt      3480
     ggacattcga gaggcgatca gggaccggaa gcagaaagaa aaagaagggt tcgatgcctt      3540
     ttatgatgcc atagtccagc taatggatag tttagagtct cccttgtcag aaaagtctgt      3600
     ggtagacata ctgcgaagaa atttgaggcc cgaagtaagg cacgagttgc tcaatataaa      3660
     aataacttcg gttggggagc tcagggaaat atgcagacga agagagagtt tcatggagga      3720
     cgtgagacgg aattatgggt atcaaaagag tgtccctttc cgtaggcaag tagctgagtt      3780
     ggtggaggag cacatgtctg atgacgcaac ggagttttcc gaaggtgagg gcgaagccga      3840
     aataggagcg ttggccttgg tatgctggaa ctgccataag gaaggacatc ggtaccagga      3900
     ttgctaatcc aaacgcaaga tcttttgcta tgggtgtggc attccaaaca tttacaaacc      3960
     agcttgcgaa aaatgtcagc aaaaaaacgg cagggcgagc acacagcctc gtcagcttca      4020
     gagtgtgcgt cgccaaaaat ccgcgagccc agacgtcagc cagtagaaaa gcaacaccag      4080
     gcagttatag atacgagcat tccagtccag cccgtcagta cagtaaaaac aaatttatgg      4140
     cataatttca ttaattctaa ttcagatgca gaggctgtag aaacactgtt ccgtcgtaga      4200
     tccaattcaa gacactccaa acggatgaga tcattttgga aggcagctaa atcaataaat      4260
     gcgattagat acaaagagct cgataaacgt ccgtaagcag cgtaatacca gcaggattcc      4320
     atttaaacgg ggcatctcag ttgctcatac tgcagatggc aggcggcagg aggttctggg      4380
     tcgattgaga actccagtca ccctatgata acgtcgtgaa ggatttggaa ctacatatca      4440
     ttccgtcgct tagccaggac ttatatctag gaatcgattt ttggtcaacg ttcaatttat      4500
     tacctccgga gatgcaggta gcagaaattt gtcaggaatc gcacgtacta attccaagtc      4560
     agaaagagga gttgcagaag gttgtgtcgg aatttccatc ctttgcagtc tctggtttgg      4620
     gtagaacatc ggttttgtcg cactcgatcg atgcaggaga tgctaagcct gtaaaacaac      4680
     ggcattttcc cgtgtcacca gccgtggaga aactgctgta tgccgaagtg gataggatgc      4740
     tcaaattagg agttattgag gaatctgata gcgcctggtc ctctccagtt gtgctagtcc      4800
     agaaaccggg aaaggttcga ctttgcctag acagccgaaa agtcaatgcc gttacacgaa      4860
     aggacgccta tccgttgccg caaatagacg gtatactaag tcgcctcccc agagccatgt      4920
     tcatctcgag tctggatctc aaggatgcct attggcagat aagcttagat ccggagtctc      4980
     gggacaaaac tgctttcaca attccaggta aacctttata tcagtttaag gttatgccgt      5040
     tcggtctcac caacgcgtcg caaaccatga ccagattgat ggacaaggtg atccctgcgg      5100
     aacttcgcaa tgaagtcttc gtctacttgg acgacttgtt aattgtttcc gatagctttg      5160
     agtcgcatat gaaggtgttg agagttgtag cgcagcatgt tcgattggct ggattaacgc      5220
     tcaacgtaga aaagagcaaa ttctgtatgc gttcagtgaa gtatcttggt catatcgtcg      5280
     gggagggtgt cattcgaacg gatcccggga aaatttcggc catgatagac tttccagtgc      5340
     cgaactcttt gagagcccta cggagattcc ttgggatggt tggatggtat cgtaaattta      5400
     tagcaaattt tgcgtcgata gcttcccctc tcactgacct gctgaaacct aagtgcagat      5460
     ttgtcatgac tccagaagga cgtaccgcgt tcgaggaact taaaaaactg ttgtgctctg      5520
     cgccagttct tcgtagtccc gattttagcc aacctttctt tgtgcattgt gatgccagca      5580
     agtcaggggt tggaggtgtc ttagtgcaaa agactccgga aggagacgaa tttccgatag      5640
     cttttgtgtc gaaaaaactt aataaggcgc aaagaaatta ttctgtgacc gagcaagagt      5700
     gtctggcggc gattgtttgc atcaatcgtt ttagggcata catagaggga catgatttta      5760
     cggttatcac cgatcatgca tctctgaaat ggctcatgac gcagacggat ctacattcgc      5820
     ggctggcccg atgggcattg aaattacagg gctttaactt caaaatagaa caccggagtg      5880
     ggcgtttaaa tgttgtaccc gatgccttat ccagagttaa tgaagaagat ttggcggccg      5940
     tggatgttgg ttatggacaa gcagttgatc tcgagtcacc agcttttcag tccgacgagt      6000
     atgtggagct ggtaaacaga ataaaggcca atgacgttaa cttgccggat ctgagggtgg      6060
     tcgaagatcg tgtgtacagg aagtgtgatt tcgccacagg gagtactctt catgatcatt      6120
     ttatctggaa gttatggatc ccacagagtc tcattccaga ggtactagcc aatgctcacg      6180
     accatccctt agcatcgcat gggggaattc ataagacttt agagcgagtg cgacagtttc      6240
     tctattggcc aagtttggtc aaagatgtaa aagcgtatgt actcgcgtgc gacacttgta      6300
     aagcaactaa agcaccgaac tctgtccagc gacccccgat gggagtggca cccgagtcgc      6360
     agaggttttt ccagaagcta tacgtagatt ttctcggccc ttatccacgt tcaaaaagcg      6420
     ggaatattgg catatttata gtactagacc actattctaa gtttgtcttc ctgaaggctg      6480
     taaaaaaact aacggctgat ctcgtgatca agtatctgca gcaagatcta ttccacactt      6540
     ttggctttcc ggagaccatc gtatcggaca atggctcgca atttaagtcg gaagtcttcc      6600
     aaaagtttct caaagcgcac aagatatcac acacggccac agcagtatac tctccgcagt      6660
     cgaatgcttc agagcgagta aaccgatctg taattgccgc cattcgttcc tatgtgaggt      6720
     ccgatcagaa aaattgggac gaggagctga gcagcatttg ttgtgccttg cgaaccgcgg      6780
     tccattctag ccttggaact tcgccctatt atatggtatt tgggcagcag ttcgttagct      6840
     ccggggaaac gtataaagtt ctgagagctc ttcgattgtt ggaagataaa tccctagcct      6900
     tctccaagga ggattcgttg gaattggtac gtagcaaggc cttaacggta atggaaaagc      6960
     aaaggaagaa aaacgaacga aattacaatt tgagatcaag ggaggtttcg taccaagtgg      7020
     gccaagaggt gttccggagg aactttaagc agagcaactt ccaggctggc tatagtgcca      7080
     aactgggccc agcctatgtg aaggccagaa tccgcaagaa gatagggaat gcttattatg      7140
     agttggagga tctacaagga cggtctattg ggcgatacca cgcgaaagac ttaaaacaat      7200
     agctgatccg cgcagtttgg atccgacttg tgtgatacca ctaagtcaga tcttcggcgg      7260
     ggggtatt                                                               7268
//
ID   Gypsy13-I_Dya repbase;    DNA;    INV; 5737 BP.
XX
AC   chr2h;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13_Dya;
KW   Gypsy13-LTR_Dya; Gypsy13-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5737
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1089-1089 (2009).
XX
DR   Genome; chr2h; Positions  790072  795808.
XX
CC   Positions [4843-5319] - Integrase core
CC   'GAGA' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           873..2414
FT                 /product="Gypsy13-I_Dya_3p"
FT                 /translation="MPLEHSFESTQPQHQADAAANCCIICEEFMLNTQPCV
FT                 ITHCNHVFHKSCLESHIQVHKECPCCLKTVQPKDWKVVVGNHSPKARSTVT
FT                 YPPKRPVVISSRPCTRSLAHQLESLTQPAPTEAEVLIRVHDQSNSPITENQ
FT                 HPPGSTPTNQGVRPRAYQAANAPGRRGRPPRQRRQNNPPVANSVPRAEIES
FT                 IVRETVTRVLSSISGSGSLAPPPDQIAGHGSPGTQRSYRSAHGIHPLGPHK
FT                 IADVLQKWGVRFDGTVEGLSVEEFLYRVKILTAEHFDGDLEIISRNIHNLL
FT                 IGKASSWFWRYHKRVQTFTWREFCVAFREQYRESRTATELREQIRSRKQKP
FT                 GESFDTFYESVCKLMDKLSVSFAEDELVEMIQGNLLIDVKERLLFENISSI
FT                 SELRRLVHKRENFLKETGRVRPPQTKPGPYRVYAMDDGQLQETQECDEENE
FT                 IAAIQRTTPLLCWNCEAPGHIWENCLAERRIFCYGCGAPQIYKPNCQNCKR
FT                 KTENRQGGTSNPGRVSQK"
FT   CDS           2597..3748
FT                 /product="Gypsy13-I_Dya_2p"
FT                 /translation="MRNYYRSLKKKRTRIVSTVFQDNIDRRSYASVKFMDF
FT                 SELGLLDTGANISCIGSSLALVDFSKYTNFKPILSKVRTADAKSHKVLESL
FT                 SVKMKYQDKEKDLELFIIPSIAQRLILGIDFWRAFELAPGIISSILNEDIE
FT                 VEEGEEKYPLTENERQQLEIVKELFPNFEKQGLGRTAIIKHSIDIGESKPV
FT                 KQRYYPVSPAVEKLMYAEIDRMLSLGVIEPSQSAWSSPMRLVVKPNKVRLC
FT                 LDSRKLNEATKKDAYPLQSIEGIFARLPKANIISKLDLKDAYWQIELTEEA
FT                 KPLTAFTVPGRALYQFTVMPFGLCNAPSTMSRLMDDLIPADLRHCVFGYLD
FT                 DLCIVSEDFASHSTVLVRIADQFKKANLTLNIKKVTSALLR"
FT   CDS           3817..5685
FT                 /product="Gypsy13-I_Dya_1p"
FT                 /translation="MNWPKPKNMKQVRGFLGVCGWYRRFIKDFADITCPIT
FT                 EVLKTKKCFKWSPEAQDAMQKLKQILTSAPVLQNADFSRKIFVHCDASDYG
FT                 IGAVLVQVSDTGEERPLAFMSKKLSKSQRNYSVTERECLAVILAIEKFRCY
FT                 LELQPFEVVTDHSSLLWLMRQQNVSGRLARWIFRLQAFKFTISHRKGKDHI
FT                 VPDALSRICDPEFVILEWIGPEIDLESSSFKDSDYLQLKKTIEENSEKFPD
FT                 LRTADQFVYIRTEHPSGNTIQDSDCWKLWVPEALRIAAIRQAHDCIVSAHG
FT                 GMQKTIERLRRHLFWPGLSKQVREYVRACDVCKETKAPNTTLRPPMGQQSV
FT                 SDRPFQKLYIDILGPYPRSKKGHIGLLIVLDHFSRYHWLCPLKKFTTSAVI
FT                 DFLGNRIFAEFGTPETIVSDNGSQFKSHEFEAFLTKFGIKHSFTALYSPQS
FT                 NAAERVNRSLLAAIRSYLRADQTEWDINLTSISSSLRSSLHQALGCSPYKA
FT                 LFGFNMINHASDYKLLRKLSLLEESPLLNCQDKLYWLRENIQQNSRTAYER
FT                 NATQYNLRSKPVSYKEGQEVFKRNFYLSNFSKNFNKKLGPQFSKCRVKKKI
FT                 GTAYYVLENLQGKEIGTYHAKDLRS"
XX
SQ   Sequence 5737 BP; 1821 A; 1100 C; 1247 G; 1569 T; 0 other;
     tagatttttt ggcgcccaac gtggggcaag tgcttattcc ttacatatat tttagtccag        60
     caggcagtca cacagatttt tggtgcagcc gccgatgctg aaaggcaggt gctaaagtat       120
     ttgtctggta tatagtacta acccctgatt tttgaaagtt gtatgtaaag ctagaaaaga       180
     atctaatttg actattggaa agcgagccct tattagggag tgctgatagg tttcgaccgt       240
     agaaaaatta attccataaa aatataattc tttggaattg aaaaagctta tgaccaaatg       300
     acatcgacgt attatccttc gagttatcga gtgaaatgaa gatttgcttc gctttagtcc       360
     ttgtaattgg tgggaaaagt accgggttgt tacaacagac attaatctgg aagctctttg       420
     tcttcgattg agatttttgt tatcattatg aaagtagtca agaaagctgt ttgatattga       480
     tatacatctt tggaattcga gtttttgaga attcgaaaac tttcgaccaa gattacaggt       540
     agcttgttat tcagaattat taacgactgg agtaaagtaa gagaaattct tagtcctatg       600
     tgttctttgg tgtgatcagt gtttgaaaac tgactagagg taagctactg gaatacaata       660
     taaatgcatt tgtgtttatt tgtccgtaga agtctgcaca gtacagtaga taatggatgt       720
     tcatacaaag aagtaacact tattaattgc catagcccaa tttaagtaaa ttcgctaagc       780
     acagaattag ttgaaagcct agaaatatgt atccgtatta tgtctccctg agaatgccat       840
     cgaagtaaaa tataaaagaa tttttattta gtatgccact agaacatagc tttgagtcaa       900
     cccaacctca gcaccaagca gatgctgcag caaattgttg tattatttgc gaagaattta       960
     tgttaaacac acaaccttgt gttataacgc attgcaatca cgtttttcac aagagttgtt      1020
     tagaatcaca tatacaagta cataaggagt gtccttgctg cttaaagaca gtacagccca      1080
     aggattggaa agtagttgta ggtaaccatt cgccgaaggc aaggagtacg gtcacctacc      1140
     ctccaaagag acccgttgta ataagttccc gtccgtgtac tcgttcttta gcacatcaac      1200
     tagaatcact tacccaaccg gcaccaacag aagccgaggt cctgatcaga gtccatgatc      1260
     agtctaattc accaattaca gaaaatcaac atccacccgg tagtactcct acgaatcaag      1320
     gagtcaggcc acgagcgtat caagccgcca atgcacccgg tagacgaggt cggccaccaa      1380
     ggcaaagaag acagaataat ccgccagtag ccaatagcgt accgagagcg gagatcgaat      1440
     ctatcgttcg agagacagta actcgtgttc tgtcatcaat ttccggaagt ggtagccttg      1500
     caccaccacc cgaccaaata gctggacatg ggagtccagg tactcaacgt agttataggt      1560
     cagcccacgg tatacatcct cttggtccac ataaaatagc cgacgtctta cagaaatggg      1620
     gagtaaggtt tgatggcaca gttgaaggat tatcggtaga agaatttcta tatcgcgtga      1680
     agatattgac agctgaacat tttgacggtg atcttgaaat tatcagcaga aatattcata      1740
     atcttttaat tggcaaagcc agcagttggt tctggagata ccataaaaga gttcaaactt      1800
     ttacttggag agagttttgc gtagcttttc gagaacaata tcgtgagagt agaacggcaa      1860
     ctgagttacg tgaacaaatt cgctcgcgga agcaaaagcc aggagagtcg ttcgatacgt      1920
     tttatgagag tgtttgtaag ctcatggata aactatcagt gagttttgca gaagatgagt      1980
     tagtagagat gatccaagga aatttactaa tcgacgtgaa agagagactg ttatttgaaa      2040
     atatttcatc tatctcagag ttgcgtaggt tggttcataa gcgagaaaat ttccttaagg      2100
     aaacaggccg agtgcggccc ccccaaacta agcccggtcc atatcgcgta tacgcgatgg      2160
     atgacggcca actacaagag actcaagaat gtgatgagga aaatgaaatt gcagcaattc      2220
     aacgtacaac tcctttattg tgctggaatt gtgaggctcc tggccacata tgggaaaatt      2280
     gcttggccga gagacgtatt ttttgttatg gttgcggagc cccgcaaata tataaaccca      2340
     attgccagaa ctgcaagcga aagacggaaa accggcaagg ggggacatcc aatccaggaa      2400
     gggtgtccca aaagtagaag atagcgctag aatagatttt gaaagagtta caattctaca      2460
     aagtaagcta gctcaagagt cgaataatga aattaacata ccttttaagc cgtatcatga      2520
     gaggttaaga aactattatt tagtgcgaga acgaattttc gggctcggaa aagaaagtaa      2580
     gcgaaatacc cgcagaatgc gaaattacta tcgttcgtta aaaaagaaga gaactaggat      2640
     tgtgtcaact gtttttcaag acaacattga tcgtcgtagt tatgctagtg taaagtttat      2700
     ggacttttct gaactaggtt tactcgacac tggtgcaaac ataagttgta tcggatcatc      2760
     actagcgctt gtggactttt cgaaatatac aaattttaag cccatattgt cgaaagttcg      2820
     aaccgcggac gccaagtctc acaaagttct tgaaagtcta agcgtaaaaa tgaaatatca      2880
     agataaggag aaagatttag aattatttat tattccttct atagcacaga ggttgatatt      2940
     aggtatagat ttctggcgcg cttttgaatt agctccaggg atcattagct ctattctgaa      3000
     tgaggacata gaagtagagg aaggtgagga aaaataccca ttaacagaaa atgaaagaca      3060
     gcaacttgag attgttaagg aattatttcc aaattttgaa aaacaaggat taggtcgcac      3120
     ggccataatc aagcatagta ttgacatagg tgaaagcaag ccggtcaaac agcgttatta      3180
     tccggtgagt cctgcagtgg aaaaactaat gtacgcggaa attgaccgaa tgcttagcct      3240
     cggagttatc gaaccttcgc aaagtgcctg gagttctcca atgcgcctgg tggtaaagcc      3300
     aaacaaagtt cggttatgtc ttgactcacg caaactaaac gaagctacaa agaaagatgc      3360
     ctatcctctg caaagcatcg aaggcatttt tgctcgtctg ccaaaggcaa atataatttc      3420
     gaaattagat ctcaaagatg cttactggca aattgagttg acagaggaag cgaaaccatt      3480
     gaccgctttt acagtcccag gtcgagcatt atatcagttt actgtcatgc cttttggctt      3540
     atgtaatgct ccctcgacga tgtctcgtct aatggatgac ttaattccgg cggatttacg      3600
     tcattgcgtt ttcggatatc tcgacgatct atgcattgtc tcagaagatt ttgcgtcaca      3660
     ttcaactgtc ttagtccgca ttgctgatca attcaagaaa gcaaacctta cactgaacat      3720
     aaaaaaagtc acttctgcgt tactaaggtg aactatctag gttatgtgat aggaagtggt      3780
     ggaatagcca ctgatccaga gaaaatatca tgtgtaatga actggcccaa acccaaaaat      3840
     atgaaacaag tccgaggttt cctaggtgta tgtggttggt acaggcgatt tataaaagac      3900
     tttgctgata taacctgtcc cattacggaa gtcttaaaaa caaaaaaatg ttttaaatgg      3960
     tctcctgaag cccaggacgc catgcagaaa ttaaaacaaa tactaacgtc tgcgccggtg      4020
     ttacaaaatg cggatttttc ccgtaaaatt tttgtacact gtgatgctag tgattatgga      4080
     attggtgctg tgctggtaca agtctctgat accggagagg aaagaccatt ggcatttatg      4140
     tccaaaaaac tgtcaaagtc gcaaaggaac tatagcgtaa ccgaacgcga atgtctggcg      4200
     gtgatattag cgatcgaaaa attccggtgt tatttggaat tacagccttt tgaagtagtg      4260
     acagatcatt caagccttct ctggcttatg cgacagcaaa atgtatctgg aagactggcc      4320
     cgttggattt ttagattgca agctttcaag ttcaccattt cgcaccgaaa agggaaagat      4380
     cacattgttc cagatgcgtt gtcccgaatt tgtgaccctg aatttgtgat ccttgaatgg      4440
     ataggtccag aaattgactt agaatcgtca tctttcaaag attctgatta tcttcagctc      4500
     aagaaaacaa tagaagaaaa tagcgaaaaa tttcctgatc tgcgaacggc agaccaattt      4560
     gtgtacatac gcaccgaaca cccttcggga aataccatcc aggactcgga ttgttggaaa      4620
     ctgtgggtgc cggaggcgtt acgaatagca gcgatccgcc aagcacatga ctgtattgta      4680
     tctgcgcatg gtggaatgca gaaaacaatc gaacggctgc gaagacactt gttttggcca      4740
     gggttgtcca aacaagttag agaatacgtt cgagcctgcg atgtttgtaa agagactaaa      4800
     gccccgaaca caacattacg gccacccatg ggtcaacaaa gtgtttcgga cagacccttt      4860
     cagaaacttt acattgacat cttaggtccc tacccaagaa gcaagaaagg tcacatagga      4920
     ttacttattg tccttgatca tttcagtcgt taccattggt tatgtccact aaaaaagttt      4980
     actacctccg cggttatcga tttccttggg aatagaattt ttgctgaatt tggaacaccc      5040
     gagaccatcg taagcgacaa tggatctcag ttcaagtcac atgagtttga agcctttcta      5100
     accaagtttg gaatcaagca cagtttcaca gcgttatact cccctcagag caacgctgcg      5160
     gaacgggtta atcgctcttt attggctgcg ataagatcct atctgagagc ggatcagact      5220
     gaatgggata tcaatttaac tagcatttcg tcgtcattac gatcctctct gcatcaagct      5280
     cttggatgct caccttataa ggcattgttc ggattcaata tgattaatca tgccagcgat      5340
     tataaattgt taagaaagct atccctctta gaagaatctc cgctgttaaa ttgccaggat      5400
     aaactatatt ggttaagaga aaatatacaa caaaatagcc gtacggctta tgaacgtaat      5460
     gcgacacagt acaatttgcg atccaagccg gtctcgtaca aagaaggcca agaagtgttt      5520
     aagagaaact tttacctaag taatttctcg aagaatttta ataagaaatt agggcctcag      5580
     ttttcaaagt gtcgagtgaa gaaaaaaata ggaacagcct actatgtatt agaaaattta      5640
     caaggcaaag aaatcggtac ataccacgct aaggacttac gaagctaatt ccagctaatc      5700
     gtgcctcttt cgaccctctc gttagattat ctggtgg                               5737
//
ID   GYPSY13-LTR_AG repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY13-LTR_AG is an LTR of retrotransposon GYPSY13_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY13_AG; GYPSY13-I_AG; GYPSY13-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-424
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY13_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 169-169 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY13-LTR_AG is a long terminal repeat of GYPSY13_AG (its
CC   internal
CC   portion is deposited as GYPSY13-I_AG).
XX
SQ   Sequence 424 BP; 171 A; 62 C; 79 G; 112 T; 0 other;
     tgtagcgcct gcaagatagg caaaacgcgc acagaataat tatagctagc taggtttaaa        60
     ttatacacat atacacttac acacatacac atagttagat tttaattatg catatatata       120
     tttacacaca tacatctaca attaaggtta cacgtaggat agaatagaat agcataagat       180
     aggaaatagg aaatagtaaa ataggcgata attaggatta gccaatgagg aataggatta       240
     aggaattttg gcgcgaacga gtgagtataa attaaggata agttgaggtt taggatcatt       300
     aacaaaagtc cgatctaaga ggaaacgctg cccgagttaa catagaagaa ataaactcca       360
     agtaactaca caaattcaag ccacattatt cttttgggta gttagaagat ttcatatcac       420
     taca                                                                    424
//
ID   Gypsy13-LTR_Dpse repbase;    DNA;    INV; 374 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13_Dpse;
KW   Gypsy13-I_Dpse; Gypsy13-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-374
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1090-1090 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   11255   10882.
XX
SQ   Sequence 374 BP; 86 A; 83 C; 108 G; 97 T; 0 other;
     tgtaacgctt ggatcagcga gcgagctagt tcgcagcgcc atctagtggt cggcaccgta        60
     agggccgtgg tagaccaaac accctctatg ggctaggtcg gggagatcac gaaaagtggc       120
     ataggaagag tgatagagtt aacagcttgg attgtcaact ttctctggca tttcaccctg       180
     tcctttgaga gggcccgagg gttgtagctt gttgaggggc ttggcttcgg tctcttcccg       240
     ttttggcgct cgacccgagc gttcgttttc tctgtcaaca gccaacaagt attttttata       300
     agtgctaaaa aggaaaaaaa cgtgtaatcg cggcgggagg agaagagctt cagcattccg       360
     gcattagttt tcca                                                         374
//
ID   Gypsy13-LTR_Dya repbase;    DNA;    INV; 2454 BP.
XX
AC   chr2h;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13_Dya;
KW   Gypsy13-I_Dya; Gypsy13-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2454
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1091-1091 (2009).
XX
DR   Genome; chr2h; Positions  787618  790071.
XX
SQ   Sequence 2454 BP; 965 A; 419 C; 399 G; 671 T; 0 other;
     tgtaatgtcc ccatatatca agattttttt ttaaatcccc aaaatttgcg ccttagttag        60
     tagcgataat aattatcgga accttatctg gcaacgtcat ctaaatggca attgaccagc       120
     tggtgaatat tgattcggag aaaagttctt cggatcccca gcatctagct tcgatctttt       180
     cttacgacga tcgtcaagct tataagttca gtcccagcag agataagacc tagcaaaaag       240
     gcaaatcaag aaaaaagaac tggagagtac aatcacatgt gctcccaact ttaatccagc       300
     gtttatttcg gcatcaagat taaaaggcca caaagaaaag gcaattaata aatgcccgtg       360
     gattgccgtg tcggcaaggt aaatatttca atgaaaattt caaaaaaatt accaaattat       420
     aataacagtt gtgcacgttt aggtcacgcg tgttattttt tatcgtcgac tacacagcga       480
     gaaatcgcca ggtcgatcga ttccactaaa gaaaaaaatc actgggtaaa tatccaagta       540
     attctgggga aaaattgccc gaaatgaatg agttatattc ccgcagttac ccgaggaaac       600
     gaagctgaat tttaaactct tccacgccga cccaaaagtt cggctggagt cagctacctc       660
     tgctgggaga caaattcttc ggaggtcgca ggaaaaaaat ctacagaaaa acctacatag       720
     aaataaaaac ccttacaaaa ctagtgtaaa acaaaaacag attaaaatac catcagtgcc       780
     taaaaaccca aaaattaatt gaagttaaac atattacatt gtacatatta cataaaacaa       840
     aagcatttga tagtgatgtg agtgtgtgca ggtgataagt aaaataagag aaaaaaagaa       900
     atacaagctg gccaaaccaa tgtaaaatcg aacactgaaa gaaaaacaaa gtttcgttgc       960
     caatgccaaa aataaaatac ttcaaatcaa aaataaaaat aattcatcat gacaatataa      1020
     acaaaaaatg aaatgaaaaa aattcataaa aaaaaaaatt gaaataaata atcctatatt      1080
     ttaattatca cttatgaaaa aaactaaata gtgcatttat agtttgaagt tttcttacta      1140
     ataaccccca acaccgcatc gacaagaagg ccttcttcga gaaccaacag tgggtgagta      1200
     aaattaaaaa aataaaatat tatatatata accaaaacaa aactaaaact tcaagttact      1260
     aaattgcaat tatgtagttc agtgtagagc ctggctacct gagttaaggc ttatcaaccg      1320
     ctcgcgccga ttaatttgtc tattttgtag attactcttt tgattcttat ccaaattcta      1380
     acatggtaat ttaaagcact ataatgtaac gtaaacattg acgactacac ggaaagaaat      1440
     taatattgac atgattggca cctacatatt ttctcccttt tagcaataga aagctttttc      1500
     tttcaatgat gcgattaaat aaataaactc catagaaaaa aaaaaacact taatagttgt      1560
     tcaggattaa taaatactta acaattacaa cataaaaaaa aaaaaaaaaa acccacacca      1620
     cttcaatgtt cttttgttgg taacaaacca gaaaaagaaa agcttggcac taaaaaaaat      1680
     aaaacaaaaa ataaatcaat aaaaaaaaat aaaaatgaat agagattttt gcgaaaaata      1740
     aataaagata aataatgtaa aataaggagc aagatacgga atcagactta gggaattaag      1800
     agtatggaat tataagatta aaactagtaa ggctaattag ttagaaatat gtacactgca      1860
     agaaatgcac tcaacaagaa agaagaaatt gtttattgaa aattaaaatt gttgtaaaga      1920
     tgaaactcta agttcttatt catggcaggg gagcataatt agatgatgca tatttaacta      1980
     catttggggt cttctaaaaa aaggttacac tgaagactat ggttgggagg gtaatgatag      2040
     tgggagtgga aattaacatc taaaaccacc ccgccaggct tacatccaaa ttcgtgcttc      2100
     cttctctcac attgtagttt aattaagttt cgcttgctgt tcattttcta aaagatgaaa      2160
     ctgagacagt ggagttgttt gttttttttt ttttccgctg ttcgtttata tgaggattgt      2220
     ctcattgttt aaattcagga tggactctat aataaaacct tttggtgtag caatcattat      2280
     ccacagcaaa aaaaaccccc cccacatctc ccgctagagc taggaatcaa tgggtcccgc      2340
     tcagctgatg gttaatggtc gacaagcctg aaaagggtga acattttgga atcgaatcgc      2400
     caacaaggat acccagtaaa tgtttctctt cttcaacggc gctcttacat caca            2454
//
ID   Gypsy13-NVi_I repbase;    DNA;    INV; 4260 BP.
XX
AC   NW_001814827;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13-NV;
KW   Gypsy13-NVi_LTR; internal portion; Gypsy13-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4260
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1209-1209 (2007).
XX
DR   Genome; NW_001814827; Positions   22706   18447.
XX
CC   Positions [3340-3624] - Integrase core
CC   'TTAAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1880
FT                 /product="Gypsy13-NVi_I_2p"
FT                 /translation="MANQIINVGASLGSLREFKSGEDWNVYEERLEQYFIA
FT                 NFVQEDRKVSVLLTSIGEEVYKTLRDLCDPVLPKGKTYTELCAILKRQFSP
FT                 RISVFKERKNFYDLKQSANETVSLWYARVKKRAVNCEFGANLDERLKDKFV
FT                 TGLRPGKILDRVCEESHSVSLKDLLEVALKKEATIDTSSIAAAAEDAASVH
FT                 AVSAKSGGGHGRKEGRGSNSSAKPKQTSKQEATCWHCGGTNHDFSRCKYRL
FT                 YDCSKCGQRGHLQKICKKKDASGKQNASVSTSKGSGRKGTTNFVEKEAGEA
FT                 SSDESCEDILNVYAIAKVCKTRIPPETIDVKIAGRKVTMEVDSGAVLSVIP
FT                 EALYRNKLAGCKLESSSKLLRMYDGTKVTPLGEIKVEVVYKNKSVKCTMVV
FT                 VKRNDETALMGRELMQAFGLRICEVNALSVEDVREQIFKEFKEVFDDQLGR
FT                 FKGEPVDLKLKADARPIFMKPRPVPFAFKKDMDKELDRLEKANIITKIDNC
FT                 EWGSPLVPVLKPDGTLRACADYSVTVNSMLEDVIHPGSANRGIVYRVARR"
FT   CDS           1987..3624
FT                 /product="Gypsy13-NVi_I_1p"
FT                 /translation="MNRLSYGTKPAVAIFQRLMEKVLLGCKNTINFLDDIC
FT                 VTGETLEEHVNNLKEVLGRLQKFGLKLNFKKCKFFQSKVEYLGHVIDKNGL
FT                 HKKTDKIEAITKAPRPENATQVKAFVGMVNYYGKFIPNLAKKLSPMYKLLK
FT                 KNVVFKWNEECEKSFKEIKKEIVSENCLVHFNPDLKIKLACDACRDGIGAV
FT                 LLHIFPDGTERPICFASRTLSKAEKNYATIHLEALAIYWGVKKFYQYLLGN
FT                 HFVLESDHKPLLALFGEKKGIPLMAAGRLQRWALFLSGYNYVFKHVKGMSN
FT                 GGADGLSRLPIKSTEKEGEERSEYFNFYVEERLPIDARLIKKATRTDQILS
FT                 KVLLYTMTEWPNKVDEGLKAFFVRKNEISVENGMLFWGYRVIIPGKYTAEI
FT                 LDEIHATHFGASKMKALARQYFWYPNMDSEIEKLAQSCDICRRNADNPNKA
FT                 TLLKFEETKQPLDRIHIDFLGPFEGCTYLIITDAYSKWPEVYKMNKCNATI
FT                 TIEKLRDYCARFGLPKKIVSDNGAQFTSEEFQKWIKMNGIKHVRTAPAQA"
XX
SQ   Sequence 4260 BP; 1430 A; 663 C; 1056 G; 1111 T; 0 other;
     ttttgcgacg aggtaaatat ggatctagtg agagtgcaaa atgtcgaata atagccttat        60
     ggacgctcca agaaggtgcc ggtaaccaac agtattcgtg gccggctaac acaacaacga       120
     gtgcaacgcc gtctaatcca gcagtgacaa gttcgacaat agtaaacgcg tcttctccgg       180
     ggggtggagc cagacctagg aattacttgc agcaaggaat tttcaacaca cagcgaaacg       240
     ggatggctaa tcagattata aacgtgggag ccagtttagg ctcgctacga gagtttaagt       300
     cgggagaaga ttggaacgtg tatgaagagc gtttagagca gtattttatc gcaaattttg       360
     tgcaagaaga taggaaagtt tcagtgctcc taactagcat aggtgaggaa gtgtataaga       420
     cgctaagaga cctgtgtgac ccagtcttac ccaagggtaa gacgtacacg gagttatgcg       480
     cgattttgaa gaggcagttt tcgcctcgca tctccgtttt caaagaaaga aaaaactttt       540
     atgatttaaa acaaagtgca aatgaaactg ttagtttgtg gtatgctaga gttaagaaac       600
     gggccgtaaa ttgtgaattc ggtgctaatt tagatgaaag acttaaggat aaatttgtca       660
     cgggactaag acctggaaaa atactagatc gagtttgcga agaaagccat agtgtttccc       720
     ttaaggacct tttagaggtc gcactgaaga aagaagcgac gatagacacg tcatcaatag       780
     ccgccgcagc cgaggacgca gctagtgtac acgcggtttc cgcgaaatcg ggcggcgggc       840
     atggaagaaa ggagggaaga ggctccaaca gttcggcgaa acccaaacaa acatcgaagc       900
     aggaagcgac atgttggcat tgcggtggca cgaaccacga cttttcgcgt tgtaagtatc       960
     gcttgtatga ttgttccaag tgcggtcagc gaggtcattt acaaaaaatt tgtaaaaaaa      1020
     aagatgcgag cggtaagcaa aacgcttcgg ttagtactag taagggtagt gggcgaaaag      1080
     gcaccacgaa ttttgttgaa aaagaggccg gtgaggctag ttcggacgaa agttgcgagg      1140
     acattttaaa tgtatatgct atcgcgaaag tttgtaaaac cagaattccg ccagaaacga      1200
     ttgatgtaaa aatcgcggga aggaaagtta caatggaagt tgacagcggt gcggtgttgt      1260
     cagttattcc cgaagccttg tatcgcaaca agctcgctgg ctgtaaatta gaatctagta      1320
     gtaaattgtt gagaatgtac gacggaacta aagtaacgcc cttaggtgaa attaaggttg      1380
     aagtagttta taaaaataaa tctgttaagt gcactatggt agtagttaaa aggaacgatg      1440
     aaacagcgtt aatgggtcga gaattaatgc aggctttcgg tctccgtatt tgtgaggtta      1500
     atgccctttc agtagaagac gttagagaac aaatatttaa agaatttaaa gaagtttttg      1560
     atgatcagtt aggtagattc aagggggagc ccgtagattt aaagctaaaa gcggatgcta      1620
     ggccgatttt tatgaagcca cgcccggtac cgtttgcttt caaaaaagat atggataaag      1680
     aattggatcg tttagaaaag gcaaatatta ttacaaaaat cgataactgt gagtggggat      1740
     cgccccttgt acctgttttg aaaccagacg ggactctgcg ggcttgcgcg gattactcag      1800
     ttacagtaaa tagtatgctc gaagacgtga tacacccggg ttccgcgaat cgaggaattg      1860
     tttaccgcgt tgcaaggagg taagttattt accgtgcttg atctggctca cgcttacaat      1920
     cagctagaag tatcggatag tacaaagcga ttgttagcat ggagcacgca taaaggcatt      1980
     tttgcaatga atagactttc ctatggaacc aaaccagcgg tagctatttt tcaaagactc      2040
     atggagaagg tgcttttagg ttgtaaaaat acaattaatt tcttagatga catttgtgta      2100
     acgggagaga cattagagga acacgttaat aatttgaaag aagtgttagg gagattgcaa      2160
     aagtttggac ttaagttaaa tttcaagaag tgtaaatttt ttcagagcaa agtagagtac      2220
     ttaggtcacg tgattgataa aaatgggtta cataaaaaaa ctgataaaat agaggctatt      2280
     acaaaggcac ctaggccgga aaatgcaacg caagttaaag ctttcgtggg catggttaac      2340
     tactatggga aatttattcc aaatttagca aaaaaattga gtcctatgta caaactttta      2400
     aagaaaaatg tagtttttaa atggaatgag gaatgcgaaa agagttttaa agaaattaag      2460
     aaagaaatag tctcagaaaa ttgtctagtt cattttaatc cggacttaaa gattaagtta      2520
     gcttgtgatg cttgtagaga tggtatcgga gcagttttat tgcatatttt tccggatggt      2580
     accgaaaggc cgatttgctt cgcatctaga acgctctcga aagcagaaaa gaattacgcg      2640
     actattcatt tagaggcgct agctatctat tggggagtaa agaaatttta tcaatatttg      2700
     ttaggaaatc atttcgtttt agagtccgat cacaagcctc ttttagctct tttcggtgaa      2760
     aagaaaggta ttccgctgat ggcggcaggc cgtctgcaaa gatgggcttt atttttgagt      2820
     ggttacaatt atgttttcaa gcacgttaaa ggtatgtcaa atgggggagc ggatgggtta      2880
     tcaaggcttc caattaaaag cactgaaaaa gagggagagg aacgaagtga atattttaat      2940
     ttttacgttg aagagcgatt accgatagat gcgaggctga taaagaaagc cacacgaact      3000
     gaccagattt taagtaaagt actcctgtat actatgacgg aatggcctaa taaggtcgac      3060
     gaaggcttga aagcattttt tgtgaggaaa aatgagatta gcgttgaaaa tgggatgctt      3120
     ttttggggat atcgagttat catacctgga aaatatacag ccgaaatctt agatgagatt      3180
     catgccacac attttggtgc tagtaaaatg aaggcgctgg ctagacagta tttttggtat      3240
     ccaaacatgg acagtgaaat tgaaaaattg gcgcaaagtt gtgatatttg tcgtcgtaat      3300
     gctgataacc ccaataaagc aaccttgctc aaattcgagg aaactaaaca gcctttagat      3360
     agaatacata ttgacttttt aggaccattt gaagggtgta cctatctaat aattacggat      3420
     gcgtattcta agtggccgga agtttacaaa atgaataaat gtaacgcgac cattactata      3480
     gaaaaattga gagattattg tgcgaggttc gggttgccta agaaaattgt gtcggacaat      3540
     ggtgcacaat ttacgtcgga ggaatttcaa aaatggataa agatgaatgg aattaagcat      3600
     gtaagaacag cgccagcgca ggcgtaacga gagtgagtta aatagagaga ggcaaatcga      3660
     aaattataaa gggaagcgag agttatactt tgaacctaat gattttgtgt acgtgcgaga      3720
     ttatagaacg ccgaataaac caaaatgggc caaggctact gtttgtgagg ccctaggacc      3780
     tagaaattat ctatgtaaaa tacacgagga tgaaaattta atttggaaaa gacatttgga      3840
     tcaaataata ccaaaaggcg gattttttga aaatgtatgc gaagaagtac cggcggaggt      3900
     gttagataaa gataagataa tgttagaaaa tgcacaagag ttggtacccg agattgaaag      3960
     ttgtagagca gaaattcctg taccaatgga atccgctgta ttaatagaga gtagcgaacc      4020
     ggaaagtaca agcgaaacga ctacagctgt aacaccaccg aatgaagggt ttaaaaatgt      4080
     aaatgaaggg atgcgtgaaa gtgacaaaag aaatgactct ccgaaaacaa caaatatggc      4140
     actggcgatg gttaataaac ctcttactct taatgttaat gaacgcccta agcgtactat      4200
     taaaagaccg gacagattga atttataacc agtagtattt gttgtcttgg gagggaggag      4260
//
ID   Gypsy13-NVi_LTR repbase;    DNA;    INV; 215 BP.
XX
AC   NW_001814827;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13-NV;
KW   Gypsy13-NVi_I; Gypsy13-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-215
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1210-1210 (2007).
XX
DR   Genome; NW_001814827; Positions   18446   18232.
XX
SQ   Sequence 215 BP; 59 A; 40 C; 53 G; 63 T; 0 other;
     tgtaggatat cgaagtaagt acgtagagat agattgtaag gttggtatgt tggcgcccct        60
     gagcgagcgt acgtgagcag cgagcgctgc ggcgcagcgc tcagattaag tcgaaccgtc       120
     ttgtcgacta cacatgtatt tgtgtgatct caataaagta ttaagttatt ctaaatacac       180
     atgtgtcact agatatttcc tatcacgtta ttaca                                  215
//
ID   GYPSY14-I_AG repbase;    DNA;    INV; 6035 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY14-I_AG is an internal portion of retrotransposon GYPSY14_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY14-I_AG; GYPSY14_AG_LTR; Gypsy clade; RNase-H;
KW   integrase GYPSY14_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6035
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY14_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 170-170 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY14_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY13_AG,
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY14-I_AG consensus was reconstructed after multiple
CC   alignment of 8 copies.
CC   The consensus encodes the 382-aa GYPSY14_AG1p gag-like protein
CC   (pos. 1218-2363) and the 1235-aa GYPSY14_AG2p (pos. 2288-5992).
CC   The sequence of the LTRs flanking GYPSY14-I_AG is deposited as
CC   GYPSY14-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1218..2363
FT                 /product="GYPSY14_AG1p"
FT                 /translation="MLPKIKQYLKRLQDIEEKLKPGDKKFRRCLIEHYGVT
FT                 ANNTFEKIKNLVSKLKIAEAPVELETITKFANISYNNINSYIKFQLQNKVQ
FT                 FKFKTLVKISIALRRWKRKTMEDFDIKTAATLVQLYDGNADSLENFLGSAN
FT                 LLRKLFPKDTKQILVEFLKTRLTGKAQLGLAPNITDFETLIQDVKSRCQEK
FT                 INPDKVIAELKSICHTDTKTLCDEVEILCTKLKVMYLKQNIPEQVANDMAV
FT                 KRGIETLIDKVKLTETRIILQAGQYTSISDATEKALESERMHNSAQQVFAF
FT                 RKNFSAPNRSFDNRYSNQYTRNTYNRSQNRGNFTSNWQTNNRHQHNNFHNT
FT                 NNRRFFRNTNRNNNRIYTTQATEQEHFLEENPQHTDYQS"
FT   CDS           2288..5992
FT                 /product="GYPSY14_AG2p"
FT                 /translation="QDLHYTSHRTRTFFRRKPAAYRLPILAINLNANNLIK
FT                 VRVEMSTEEYSHLIIDTGADVSLFKINKIKSNQHISAQNKINLTGITTHTI
FT                 DTLATTFTTIHFGETSVKHQFHLIPKELDIGADGILGRDFFANYRCVIDYE
FT                 HWLLNFTHNGMAVCQPIEDKSNDGFILPTRSEVIRKVKLPNIDEDSIVFAE
FT                 EIRPGLFCGNSIISKENQYVKFINTTEKNIFINHKSFRPQVDQVKNYNVTK
FT                 PSGNKEITRFDSIINSINMKNVPQYIESDLKNLLAKYTDLFCVNEDKISIN
FT                 NFYKQSIQLKDNIPCFVPNYKQIHSQSDEIKQQVDKMLKNDIIEHSVSSYN
FT                 SPILLVPKKSETEKKWRLVVDYRQLNKKIMPDKFPLPRIDEILDQLGRAKY
FT                 FTTLDLMSGFHQIPLDKESRKYTAFSTATGHYQFKRLPFGLNVSPNSFQRM
FT                 ITIAMAGLTPESAFVYIDDIIITGCTTKHHLDNLKKVFDRLRHYNLKLNPQ
FT                 KCKFFQTEVTYLGHKITDKGIYPDESKFEAIKNYPKPVNSDEVRRFVAFCN
FT                 YYRKFIRNFAEIAKPLNELLKKGKIFNWSSECQQAFDTLRNNLLSPMVLKY
FT                 PDFTKEFIITTDASDTACGAILSQICEGNDHPVAFASKSFTKGEKNKPTIE
FT                 KELTAIHWAINYFKPYVYGRKFKIRTDHRPLVFLFNMKNPTSKLTRMRLDL
FT                 EEFEFEVEFVAGKTNVGADALSRIVTTSDRLKSLQECTNEANNNQALVVKT
FT                 RAMTRANREETNPVAQNDTSEKIGKPAFWNTENPSEVNKLLKIQSKINKDS
FT                 IKITLFNNNYNKELESTIIRLNQNGSQAFEAALLRLCTYAKKLNRDKLAIS
FT                 MEDEIFTQYSPQTIKEIVNRTIFGCEIIGFVPPKWITARKEIEEILHNYHM
FT                 LPSGGHVGQYRLYLKIRDKYKWKNMKEDIKGFVKNCEMCKINKITRHTIEK
FT                 PVVTTTPLRPFEIISIDTVGPLPKTAKHNRYAVTVQCDLTKYVILIPTGNK
FT                 EANTIARALIENVILTYGKFAEMRSDQGLEYNNEVLKKVAEALGIKQTFAT
FT                 AYHPQTIGALERNHRTLNEYLRAFTNEHGDDWDNWVKFYEFTYNTTAHTDT
FT                 GYTPFELLFGRKANLPQDIVTGKIEPVYNHELYYNELKYKLQKSNEVARKK
FT                 LIEQKEKRHIAPNCSINPLIIEPGDKVYLKNENRRKLDPLYLGPYIVSKIQ
FT                 NPNCTIVSKYSKKESTVHKNRLVKR"
XX
SQ   Sequence 6035 BP; 2348 A; 1124 C; 1133 G; 1430 T; 0 other;
     tggcgaccgt gatcgtgaaa tccaacgacg acacgaatct gtgataaatc cacgcaatac        60
     caaatcggat gtgcacagaa taccaacaac aaaacatcca tcggtataca aaaaaaaata       120
     agtctaacgg taacgtgtgt aattcctcga ctacgcaaac ccgaagctag caagtgtgct       180
     tgagagtaca ttgaccgacg tttggagcaa cgaccgagga tcacgtcgaa tcaggactag       240
     attcccaagc ggtcaggtga aatcgaatgc gtgtcaagag cgagagaaaa aaaaaataag       300
     aaccgtacgg gaatagcaca ccacggcaaa tagtgatcgg taatagtcgg agagaacaga       360
     ggtgtgagaa aattaatagc gtaaaagcgg gcgtaatgag agtggtggat tgctatcatc       420
     atcagcagtc gaaggcatga gaagagtgcg acgaaagtag tgatctgtac ggcgagtgca       480
     gtgtacagtg taccacgagg ccagtgaaca gtacgagaag tgtgcgacaa aagtagtgat       540
     ctgtacggcg agtgcagtgt acaatatgag aagtgtacca ccaggccagt gaacagtacg       600
     agaagtgtgc gacgacggcg gtagacggca ggagtatact gtgtgacgac agcagtgaac       660
     agtacgagaa gtgtgcgacg acggcggttg aaggcaggag tatactgtgt gacgacagca       720
     gtgaacggaa agagaagtgt acgacgagag aaacgagcag taagagaagt gcatcacatt       780
     atcagcgagc ggtacgagaa gtgtgttgtg acgacggcag cggaaggtga gaattaacga       840
     gagcagcgga cggcgtttgg cgagagcagt tgacggcgta tgaagtgttc gagaatatcg       900
     gacggcaaat gcagcagcga aatacgataa tgacccctcc cccccgtaag gtaggatatg       960
     cgtagtgaaa tagaattggg ttacaaagaa tatttttggg tttaattata ctaaggagct      1020
     aaggattaag ggttaaatta taattgtaat tgctcaatta attttttttc tcgcgcaaaa      1080
     aaaaaaaaaa aaaaaaaaaa tatatataaa aaattaaaat atatatgcat acatatatag      1140
     aaaaaagtca ctattcaata taccccttca cgattattta ccttcgttgc ctcaaaatag      1200
     tcgacatgct cgtttaaatg ttacctaaga tcaaacaata tttaaaaaga ttacaagata      1260
     ttgaagaaaa attaaagccg ggtgataaaa agtttcgcag atgtttgatt gaacactatg      1320
     gtgtcactgc aaacaacacg ttcgaaaaaa taaaaaattt agtatccaaa ttaaagatag      1380
     cagaggcgcc agtagaatta gaaacaatta ctaaatttgc aaatatcagc tacaacaaca      1440
     ttaattcgta cataaagttt caattacaaa ataaagtcca atttaaattt aaaacacttg      1500
     ttaagattag cattgcatta cgccgttgga aaaggaaaac catggaggat ttcgatataa      1560
     aaaccgcagc aacattagta caattatatg acggaaatgc ggacagctta gaaaattttc      1620
     tgggttcagc aaatttatta aggaagcttt ttccgaaaga cacgaagcag atactagtag      1680
     agttcctcaa aacacgatta acaggtaaag ctcaactagg gttagcacca aacataactg      1740
     attttgaaac ccttatccag gatgtaaaat cacgatgcca agaaaaaata aaccccgaca      1800
     aggttatagc agaattaaaa tcgatttgcc atacagacac gaagacccta tgtgacgaag      1860
     tggagatact atgtacaaaa ttaaaagtga tgtatctcaa acaaaacata ccggagcaag      1920
     tggctaacga catggcagtc aagcgaggaa tagaaacact cattgacaag gtcaaactca      1980
     cggaaacaag gattatatta caagcagggc agtacacctc tatatcagat gcaacagaaa      2040
     aggcactaga aagcgaaaga atgcacaatt cagctcaaca agtgttcgca tttagaaaaa      2100
     actttagtgc tcccaatcgc tcctttgaca atagatattc aaatcagtac actcgtaata      2160
     cgtacaacag gtcacaaaat agaggaaatt ttacttcaaa ttggcaaaca aataatcggc      2220
     atcaacataa taattttcac aacaccaata accgacgatt tttcagaaat accaacagaa      2280
     acaataacag gatttacact acacaagcca cagaacaaga acatttttta gaagaaaacc      2340
     cgcagcatac cgattaccaa tcttagccat aaatctaaat gccaataacc ttatcaaagt      2400
     aagagtagaa atgtcaacag aagaatacag tcacctaatc atagacaccg gagcagatgt      2460
     ttctttgttt aaaataaata aaatcaagtc caaccaacat atatctgcgc aaaacaaaat      2520
     taatctgaca ggtataacta ctcatacaat agatacttta gccactactt ttacaacaat      2580
     acatttcgga gagacgtctg tcaaacacca attccacctg ataccaaaag aattagatat      2640
     tggggcagat ggcattttgg gcagagattt ttttgcaaac tatagatgtg taattgatta      2700
     tgagcattgg ctactcaatt ttactcacaa tggcatggcc gtctgccaac ccatagaaga      2760
     taaatccaat gatggtttca tattacccac gcgaagtgaa gtgatacgaa aagtaaaact      2820
     gccaaacatc gacgaagatt ctattgtgtt tgcagaagaa ataaggccag gattattttg      2880
     tggcaattca atcatatcga aggaaaacca atacgtaaaa tttataaaca caactgagaa      2940
     aaacattttc atcaaccata agtccttcag accccaagtc gatcaagtga aaaattataa      3000
     tgttacaaaa ccctccggta acaaggaaat aaccagattt gatagtataa taaatagcat      3060
     aaatatgaaa aatgtcccac aatacataga aagtgactta aagaacctcc tagcaaaata      3120
     tacagacctg ttctgcgtaa atgaagataa aatttccatt aataattttt acaaacaatc      3180
     gatacagcta aaagacaaca taccgtgttt cgttccgaat tataaacaaa ttcattccca      3240
     atcagatgaa ataaaacaac aagtcgataa aatgttaaaa aatgatatta tcgagcattc      3300
     agtatcatcc tataattccc caatattgtt agttccgaaa aaatcagaga cagagaaaaa      3360
     atggagactt gtcgtagatt accggcaatt aaataaaaaa ataatgccag ataaatttcc      3420
     attgcccagg atcgatgaaa tattagatca actcggtagg gcaaaatatt tcacaacact      3480
     agatctcatg tcaggtttcc accaaatacc tttggataaa gaatcgcgga agtatactgc      3540
     gttttccacc gctacaggcc actatcaatt caaaaggtta ccctttggac taaacgtgag      3600
     cccaaatagt tttcagcgca tgattacaat agcaatggct gggttaaccc ctgagagcgc      3660
     gttcgtttac atcgatgata taatcataac aggttgcact actaagcacc accttgataa      3720
     tttaaagaaa gtttttgata gactacggca ttataatctt aaattaaatc ctcaaaaatg      3780
     taaattcttc caaaccgaag ttacttacct tgggcacaaa attacagaca agggaatata      3840
     ccctgacgaa tccaaatttg aagcaattaa aaattacccc aaaccagtta actcagacga      3900
     agttagaaga tttgttgctt tttgcaatta ctaccgtaaa ttcattcgta actttgcgga      3960
     aatcgcgaaa cctttaaacg aattgttaaa aaagggaaaa atattcaatt ggtcgtccga      4020
     atgtcaacaa gcttttgata cccttcgcaa caaccttcta tcacctatgg tcctcaaata      4080
     tcctgatttt acaaaagaat tcattatcac tactgatgcg tcggacacgg catgtggggc      4140
     catactatcg caaatatgcg aaggaaatga ccatcctgtg gcatttgctt ctaaaagctt      4200
     taccaagggt gagaaaaaca agccaaccat agaaaaggaa ttgacagcta tacattgggc      4260
     tatcaattat ttcaaacctt atgtctatgg tcgaaaattt aaaattcgta ccgaccatag      4320
     acccctagtt tttctgttca acatgaaaaa tccgacctcc aaactaacac gaatgagatt      4380
     ggaccttgag gagtttgaat ttgaagtaga attcgtagcc ggtaaaacta acgttggggc      4440
     tgacgcactc tcaagaatag taactacctc tgatcgtctg aaatcattgc aagaatgcac      4500
     taatgaggcc aacaacaatc aagctttagt agtaaagact agggcaatga ctagagctaa      4560
     tagagaggaa acaaatcctg tagcacaaaa cgacacaagc gagaagatag gcaaaccagc      4620
     attttggaac accgagaacc catcagaggt taataaatta ttaaaaattc agtcaaaaat      4680
     aaataaagat tcaattaaaa taacactttt taacaacaac tacaacaagg aactagaaag      4740
     tacaataatc agattaaacc agaatggaag tcaggcattc gaggctgctc ttctaagatt      4800
     atgtacttat gcaaaaaagc ttaatagaga caaattagct atctccatgg aagacgaaat      4860
     ttttactcaa tactcgcctc aaaccattaa ggaaatcgta aatagaacca ttttcggttg      4920
     cgagattatt ggatttgtac cacctaagtg gataacagca agaaaagaaa tagaagaaat      4980
     tctacacaat tatcacatgc taccttcggg aggacatgtt gggcaatatc gcctctatct      5040
     aaaaataaga gacaaataca aatggaaaaa catgaaagaa gatataaaag gcttcgttaa      5100
     aaactgcgaa atgtgtaaga taaacaaaat aacacgacac acaatagaga aaccagtagt      5160
     aacaacaaca cccttaaggc cgttcgaaat aatttcaata gatacagtgg gccctcttcc      5220
     aaaaacagcc aagcacaaca ggtacgctgt tactgtacaa tgtgacctca caaaatatgt      5280
     aatcttgata ccaacaggaa ataaagaggc caacacaata gcaagagctc tcatagagaa      5340
     tgtcatttta acatacggta aatttgcaga aatgcggtcg gatcaaggtc tagaatacaa      5400
     caacgaagtg ttgaaaaaag tagcagaagc actggggatc aaacagacgt ttgcgactgc      5460
     ttatcaccca caaacaatag gcgctttaga acggaaccat agaactttaa acgaatattt      5520
     gagagcattt accaacgagc atggcgatga ttgggataac tgggtcaaat tctatgagtt      5580
     tacttacaac accacagcac atacagatac tggctataca ccatttgaac tattatttgg      5640
     gagaaaagca aatctcccac aagacatagt gacaggcaaa atagaacctg tgtataatca      5700
     cgaactttat tacaatgaat taaagtacaa actacagaaa tcaaacgaag tagcgcgaaa      5760
     gaaattaatt gagcaaaaag aaaaaagaca catcgctcca aactgcagca tcaacccgct      5820
     aataattgaa ccaggagata aggtgtactt aaagaacgaa aacaggagaa aactagatcc      5880
     tttatattta ggtccatata ttgtttctaa aatacaaaac ccaaattgta caatcgtaag      5940
     caaatacagc aaaaaggaaa gtactgtaca taaaaatagg ttagtcaaac gatgaaaatc      6000
     tatgctatac gattttcatt tctaaagggg ggagg                                 6035
//
ID   Gypsy14-I_Dpse repbase;    DNA;    INV; 3604 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14_Dpse;
KW   Gypsy14-LTR_Dpse; Gypsy14-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3604
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1092-1092 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions    9901    6298.
XX
CC   Positions [1265-1771] - Reverse transcriptase
CC   Positions [2836-3312] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..1990
FT                 /product="Gypsy14-I_Dpse_2p"
FT                 /translation="MKDIASRGSIADDTFIQYLIDGIDGKGVNKTILYGAT
FT                 NINQFKEKLKCYKTIMEKENQMEKETSKRNEINIKETDKKSQSMNKDDKKE
FT                 VKCYNCGGKGHLSSNCQNKDKGRKCFKCNQFGHISKDCKIEKFGATSVNTR
FT                 RLQPKPDITHKEVAFENKKCIALFDTGSKFNVMREDFYREIGKPKLESCKI
FT                 VLIGFGDCGSNRIKPVGHFKHAVLIDDGEFLLDFYVVLLCRLIDVKLIIGE
FT                 ELCLLAVIVFNRNGLQVRNMSSNMSSNMSSGDELNIMKICAEIDNDVIDIN
FT                 EAASESAKKEVRELIDNYVPNKSKTTNVEMRIVLKDESPIFSRPRRMAFTE
FT                 TRIVDEQIEEWLKNDIIEESTSEFTSPIVLVKKRDGSARVCVDYRRINKVT
FT                 VKDHFPLPLIEDQLDRLQEAKIFSTIDLQNAFFHVPVSESRRKYTSFVTKR
FT                 GQYQFLRVPFGFLNSPGVFQRHVNAIFRHLSSKGIALPYVDDVIIPAQTEQ
FT                 EARKNLKEVIETCKDFGLELNIKKCHFLKTRIQFLGHLTENSKIYLSTEKI
FT                 DAVSKFKMPQSLKQVESFLGLTGYFRKFIPNYAGIARPLTELTENKKKF"
FT   CDS           2179..3603
FT                 /product="Gypsy14-I_Dpse_1p"
FT                 /translation="MSKKTTDAQRKYSSYELEILAVIEALTKFRVYLLGIH
FT                 FKLITDCNAFTKTLEKQNLCTRVARWILFLQEYDYAVEHRSGTRMKHVDAL
FT                 SRYPIMMITEDSISIALKDAQSKDEKIKAIKQILNDEQKTYDDYFLKSGML
FT                 YRLVQDEELMVVPNDMQKQIISRAHDRGHFAAKKTKDLICREFYIQNVEEK
FT                 IKKYIECCIPCILMNRKRGKQEGLLHPLQKEDVPLYTYHIDFLGPLDSTHK
FT                 DYKHIFAVIDSFTKYCWLYPTKSTTANEVIAKLSSQSITFGNPAFIISDKG
FT                 SAFTSQDFVKYCDDEGIKLVKTTTGLPRVNGQVERLNAIIISVLSKLSIDD
FT                 PTKWYRHVSKVQQAVNSTFTRSIDTTPFEMLVGVKMRTKEDLQIRQLINKE
FT                 AATIFNDERSDLRAKAKAQIVKLQNENKKTYNLRRKPARRYNIGDLVAIKR
FT                 TQFGSGLKLKAKFLGPYQVVGIKHNNVFGF"
XX
SQ   Sequence 3604 BP; 1277 A; 609 C; 774 G; 944 T; 0 other;
     aaggtttttg ttcgccaaaa aatctctaaa aggaatcgcg aaattgtttg tattgagtga        60
     aagaggtttg aattcatgga attccctcaa gcaggcatta ttgtcagaat ttaagtcgaa       120
     tgtaaccagc aagcaaattc atgagcaact cgcgcaaacg aaacgaggca gcaatgagtg       180
     tgtattcgaa tatttctaca aaatgaaaga cattgcatca cgaggaagta ttgcagacga       240
     cacatttatc caatatttga ttgacggcat agatggaaaa ggtgtgaata agacaatttt       300
     gtacggcgca acaaatataa atcagtttaa agaaaaatta aagtgctata aaacaattat       360
     ggaaaaagaa aatcaaatgg aaaaagagac ctcgaagcga aatgaaatca atataaaaga       420
     aaccgacaaa aaaagtcaaa gcatgaacaa agatgataag aaagaagtga aatgttataa       480
     ttgcggtggt aaaggtcact tatcgagtaa ctgtcaaaat aaagataaag gtcgaaagtg       540
     tttcaaatgc aatcaattcg ggcatatttc taaagattgt aaaattgaaa agtttggtgc       600
     aacgtcagta aatacgcgta gattgcagcc aaaacccgat atcacacaca aagaagtcgc       660
     atttgaaaat aaaaagtgta tcgcgctttt tgatacgggc agcaagttca acgttatgcg       720
     ggaagacttt tatcgcgaga ttggcaagcc gaagttggaa agctgtaaaa ttgttcttat       780
     tggatttggc gattgtggct ctaataggat aaaaccagtt ggacatttta aacacgctgt       840
     tctaattgac gatggtgaat tcttgttaga tttttatgta gtacttttat gtagacttat       900
     cgacgtgaag ctaattattg gagaagaact gtgtttactg gcggtaatcg tttttaatag       960
     aaacggactt caagtgcgca atatgtcgag caatatgtcg agcaatatgt cgagcgggga      1020
     cgaactaaat ataatgaaaa tttgtgcgga aattgacaat gacgtgattg acattaatga      1080
     agcagcaagt gaatctgcca aaaaagaagt acgcgaacta atagacaatt atgtgccaaa      1140
     caaatcaaaa acaacaaatg tagagatgcg tatcgtatta aaagatgagt ctcctatatt      1200
     ttcgcgtccg cgcagaatgg cgtttacgga aacgcgtatc gtcgatgaac agattgaaga      1260
     gtggcttaaa aatgacatta tcgaagaatc tacatcggag tttacaagtc caatagtcct      1320
     tgttaaaaag cgagacggtt cggcaagggt ttgtgttgat tacaggagga tcaataaggt      1380
     aactgtcaaa gaccattttc ctttgccgct tattgaagat caactagaca gattgcaaga      1440
     ggccaagata ttcagcacga ttgatcttca gaatgcgttt tttcatgtgc cggtttctga      1500
     atctcgtcgg aagtacacgt cgtttgtaac taagcgaggc caatatcaat ttttgagagt      1560
     tccgtttgga tttctaaatt caccaggagt ttttcagcgg cacgtcaatg cgatatttcg      1620
     acatctgtcc agcaaaggta ttgctttacc ctacgttgat gacgtgatta ttccagcaca      1680
     gacagaacaa gaagctagga agaatctaaa ggaagttatc gaaacatgca aagattttgg      1740
     cctagaattg aacataaaaa aatgccactt tctaaagacc cgtattcaat ttcttggtca      1800
     tttaactgaa aacagtaaga tttatctttc aacagaaaaa atagatgctg tgtcaaagtt      1860
     taaaatgcca caatcactca aacaagtaga gagtttcttg ggactgactg ggtatttcag      1920
     aaagtttatc ccgaattatg caggcattgc tagaccttta acggagttga cagagaacaa      1980
     aaaaaaattt taatttgatg tatatgaaga gaatgccgtt aatatcttaa aaaaaaactg      2040
     ctgacggaga acccagtatt gaatatatat aatcagactt acgatacaga agtacacaca      2100
     gatgcatcaa ttgatggttt tggtgcagtt ctattacaga aatcgccaga cgacggacag      2160
     ctacacccgg tctattatat gtccaaaaag actactgatg cacagcggaa atatagcagt      2220
     tacgaattag agattttggc agtaatagaa gcgttaacca agtttagagt gtatctctta      2280
     ggcattcatt ttaaactgat aacagactgc aatgctttta caaagacgct ggagaaacaa      2340
     aacttatgca ctagggtggc gcgatggatt ttgttcctgc aggagtacga ttatgctgtg      2400
     gaacatcggt caggaactag aatgaagcat gtcgatgctc tcagccgcta cccaatcatg      2460
     atgataactg aagacagcat aagcatcgct ttaaaagatg cacagtcgaa agatgaaaag      2520
     attaaggcta ttaaacaaat tctgaacgac gaacagaaga cttacgacga ttatttcctg      2580
     aaatctggta tgctatatag acttgtacag gacgaggaac ttatggtggt acccaatgac      2640
     atgcagaaac aaattatcag ccgtgcacat gatagaggtc attttgcagc aaagaagacg      2700
     aaggatttga tttgtagaga attctacata caaaatgtcg aagagaagat caagaaatat      2760
     attgagtgct gtattccgtg tattttgatg aaccgaaaga gaggcaagca ggaagggcta      2820
     ctacacccac tccagaaaga agacgttcca ttatacactt atcatattga ctttttggga      2880
     cctctggatt cgacgcacaa ggactacaaa catatctttg cagttataga ctcattcacg      2940
     aagtattgct ggctgtatcc cacgaaatcg actaccgcaa atgaggttat tgcgaagctt      3000
     agcagtcaaa gtattacatt tggtaatcca gcgtttataa tctcagataa gggctccgct      3060
     ttcacctcgc aagactttgt taagtattgt gacgacgaag gaattaagct ggtgaagacg      3120
     acgacaggac taccgagagt aaatggtcaa gttgagagac tgaatgcaat cataatttca      3180
     gtgctctcaa aactgagtat cgacgacccc acgaaatggt acaggcatgt cagcaaagtt      3240
     caacaagctg taaattcaac atttacgaga agcattgata cgacaccctt tgaaatgcta      3300
     gttggagtta agatgcggac aaaagaagac ctccaaatac ggcaattgat caacaaagaa      3360
     gcagcaacta tatttaacga cgaacgcagc gacctaagag caaaggcaaa ggctcaaatt      3420
     gtgaagcttc agaacgaaaa taagaagacg tataatctac gacgaaaacc tgcaagacga      3480
     tataatattg gtgacttggt tgccatcaaa cgtacacagt ttggtagtgg cctgaaatta      3540
     aaagcaaagt ttttgggacc ctaccaagtt gttggaatca aacataacaa tgtttttggg      3600
     tttt                                                                   3604
//
ID   Gypsy14-I_Dya repbase;    DNA;    INV; 3663 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14_Dya;
KW   Gypsy14-LTR_Dya; Gypsy14-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3663
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1093-1093 (2009).
XX
DR   Genome; chr3R; Positions 6836532 6840194.
XX
CC   Positions [2444-2914] - Integrase core
CC   'TAAG' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           101..2302
FT                 /product="Gypsy14-I_Dya_1p"
FT                 /translation="MACLKDLIANNIKNASKAAICTLHKFVFEEEGDRNNR
FT                 KRLREFTGFKYDENAAAYIRKCTYIDEHLNERDLTSICVVLGISHDVENAP
FT                 EHIFRNLQYGNLLAYDENGQNDESDEESENDEDNKSEEENQIDEGNSAHGI
FT                 GRDRRNTQDETPRFAISFRDIEESIKQFDGGDETPIEVWISDFEDQALLMG
FT                 WNELQKLIFAKKSLKGVAKLFVLSEKRLNSWNALKKSLLSEFKSTVSSKQI
FT                 HKQLGESKRRANENAQEYLYRMKDIASRGKVEEEALIQYVIDGIDELSLNK
FT                 SVLYGARNLSDFKRKLKDYQIINIKSKFSDGSVKGKKWQPMFSDAKSDKKE
FT                 IACYNCGEKGHLANSCNNKEKGRKCFKCHKFGHISKNCSQDEKSVKEHEPN
FT                 TRVLKENSGLTSKIVSIKHQHTVPESEDLKKTTTDTIMNPEDEQKIAQLEK
FT                 KALQWDKNRALGDLESDSDLDVHNEGIADPPSGDDMDVGDERTTLDSILGS
FT                 TMDSESVPNLEDGLPDPELAYNEGKMYARMAANTPHKETQGMDDDKLVSCS
FT                 TPVPNTKYHHKELVNGRSHKMVYIGPTSDMGLVNRLQDEFDALYETCPNSN
FT                 GQGIKYQLMVMWSTPHNPTARFSLSPNQPSGKKRKIVNYAWNPEPASVFVP
FT                 EPEVSEQSLPERQIKTYLRKGIELRGKTSDIPNFKITNETLGFSNEDLKVL
FT                 YPDTSMYPDNPVFVLEDVFTYTKQLNKCSLHYDA"
XX
SQ   Sequence 3663 BP; 1376 A; 687 C; 782 G; 808 T; 10 other;
     ttttgggggc tcatccggga taaaaccaaa aaacagtgaa aacgtgtaga aaagtgaacg        60
     acgaaaaaat ataaaatttt gtttataaat tcaacgaaaa atggcgtgtt taaaagactt       120
     aatagctaat aatataaaaa acgcttcgaa agcagctatt tgcacattac ataagttcgt       180
     tttcgaagaa gagggagaca ggaataatcg caagcgtctg cgagagttta ctggtttcaa       240
     atacgacgaa aatgccgcag cctacatacg caaatgcacg tacattgatg aacatttaaa       300
     cgagagggat cttacatcaa tatgcgtagt tctcggaata agtcatgatg tagaaaacgc       360
     accagaacac atatttcgga atttgcaata cggcaacctt ctcgcctacg acgaaaatgg       420
     acaaaacgat gaatcagacg aggagagcga gaacgacgaa gacaacaaat cagaagaaga       480
     aaaccaaatc gacgaaggaa acagtgctca tgggataggc agagaccgga ggaatacaca       540
     agatgagaca ccccgttttg ccattagttt tcgggacata gaggaatcaa taaaacaatt       600
     cgatggcggt gatgaaactc caatagaggt gtggataagc gactttgaag atcaagcctt       660
     gcttatggga tggaacgaac tccaaaaatt aatttttgct aaaaagtcgt taaagggtgt       720
     cgcaaaactc tttgttttaa gtgagaaacg gctaaattcg tggaatgcgt tgaaaaagtc       780
     cctcttgagt gaattcaagt cgacagtgag cagcaagcag atacacaaac aactcggaga       840
     aagcaagcga cgtgcgaacg agaacgcaca agaatatttg taccggatga aagacattgc       900
     atcacgagga aaagtcgaag aagaagcact tattcaatac gtgatcgacg gtattgacga       960
     actttctcta aacaaatccg ttttgtatgg tgcaagaaat ttatctgact ttaaaagaaa      1020
     gctaaaagat taccaaataa taaatatcaa atcaaaattc tccgacggaa gtgtgaaagg      1080
     gaagaaatgg cagccaatgt tcagtgatgc aaagagtgac aaaaaagaga ttgcttgtta      1140
     caactgcggt gaaaagggac atcttgctaa tagctgtaac aataaagaga aaggaagaaa      1200
     gtgtttcaag tgccacaaat ttggacatat ttcgaagaat tgttcacaag acgaaaaaag      1260
     tgtcaaagaa catgaaccaa acactcgagt tttgaaagaa aacagtggtt taacgagcaa      1320
     gatcgtttcg attaaacacc aacatacagt cccagaatcc gaagatctga agaaaacaac      1380
     aacagatacc atcatgaatc cagaagatga gcagaagata gcacaacttg agaaaaaagc      1440
     actccagtgg gataagaaca gagcactagg tgacttggaa agtgactcgg acctggatgt      1500
     acataacgag ggcatagcgg accctccttc aggcgatgat atggatgttg gtgatgaacg      1560
     aaccactcta gatagtatat tgggctctac tatggactcg gaatcagtcc cgaacttaga      1620
     ggacggactc cccgatcctg aattagcata caatgagggt aagatgtatg cgaggatggc      1680
     cgccaatact ccacataaag agacacaagg gatggatgac gacaaactgg tgtcttgttc      1740
     tactcctgta ccgaatacta aatatcatca caaggaatta gttaacggtc ggagtcataa      1800
     gatggtttat ataggtccca cttctgacat gggactcgtc aataggttac aggatgagtt      1860
     cgatgcactt tatgagactt gccccaattc taacggccag gggataaagt atcagttgat      1920
     ggtcatgtgg agcacccccc ataacccgac tgcgcgcttt tctttatcac ccaatcagcc      1980
     atcagggaag aaaaggaaga tcgtcaacta tgcatggaac cctgagccgg cctcggtgtt      2040
     cgtacctgag cccgaggtgt ctgagcaatc ccttcctgaa cggcagatta aaacatatct      2100
     caggaaagga atagagctta gaggaaaaac atctgatatc cctaatttta aaatcaccaa      2160
     tgaaaccttg ggcttttcga atgaagatct taaagtatta taccctgaca catctatgta      2220
     cccggacaat ccagtattcg tcttggagga tgtattcaca tataccaagc agttgaataa      2280
     gtgctccctc cactatgatg cttagattga cttagattag atttaaccga gcatgaaaaa      2340
     aaaaaaaaaa aaaaaaaaaa atatatatat tgactgctgc ataccgtgca ttttaagcaa      2400
     ccgcaaacaa ggcaagcagg agggcttact acatccatta caaaaagaag attttccatt      2460
     gcacacttac catattgact ttttaggccc attagaatgg acaaacaaaa attacaagca      2520
     cattctagct gttgtagatg cttttacgaa gttctgctgg ctttacccaa caaagtcaac      2580
     aactgctact gaagtcatag caaaattacg aggacaaagt aacgtttttg gcaaccccgt      2640
     ctgtataatt tcagacagag gatcagcatt tacatcccaa gattttttac aatactgcga      2700
     ggaagaagac ataaaagtag taaaatcaac gacaggttta ccgcgtgtaa acggacaggt      2760
     ggaaaggatt aacgcaatta ttataccagt tctttccaag ttaagtgtag atgatccaac      2820
     gaaatgtata gacacgttga tcgagttcaa caagccatta actcaacttt cgcgagaagt      2880
     atcaacacaa caccctttga acttcttatc ggtgtaaaaa tgagaagcaa agatgataag      2940
     caacttcacg acttaatcag gaaggaatca ataagcctgt ttatcgacaa tcgcaacgac      3000
     cttcgcctta aagctaaaac acagattttg aaattgcaag ccgaaaacaa aaagacgtat      3060
     aacttacgac gtaaacctgc acgaatgtac aacgttggcg acctagtagc cattaaacgt      3120
     acacagtttg gcggcggact caaattaaaa tcaaaatatc tgggcccgta tgaaatcacc      3180
     aaagtaaagc acaacaatgc gtacgatgtt caaaaaattg gaaattcgga cggcccaaaa      3240
     aattcatcaa cttgtgctga atatatgaag tcatggccca ttcatgatgt aaatgatgaa      3300
     aacgagtccg aaacgatgta aaaactcgac gagaacgaca taacgaataa agatggcgaa      3360
     acgacaagaa aatacggcga atatgagaat gaaataacga atgaaagacg aaagatgtaa      3420
     agacggtgaa aaagagcgta gggaagttaa gccaaaaaaa aaaagacgaa aaataaagac      3480
     gaaacgatgt atagnnnnnn nnnncagagc cctgtgccga aaaataaaga cgataaagat      3540
     gtaaaaacga cgacgacgaa tactagagag aaaacctatg aagaagacaa ccaagcgatg      3600
     aaaacgacga cgaataagat gacgacgaaa cattcgagac gaatgtttgt caggatggcc      3660
     gaa                                                                    3663
//
ID   GYPSY14-LTR_AG repbase;    DNA;    INV; 404 BP.
XX
AC   .
XX
DT   30-SEP-2003 (Rel. 8.08, Created)
DT   30-SEP-2003 (Rel. 8.08, Last updated, Version 1)
XX
DE   Long terminal repeat from GYPSY14 LTR retrotransposon - a
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY14; GYPSY14-I_AG; GYPSY14-LTR_AG;
KW   Long terminal repeat; RETRO19_AG_LTR; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-404
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO19_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 4-4 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to MDG1, TABOR, DM412, STALKER2, and BLOOD
CC   retrotransposons
CC   from Drosophila melanogaster. 4 bp target site duplication.
CC   The original name RETRO19_AG_LTR has been changed to
CC   GYPSY14-LTR_AG.
XX
SQ   Sequence 404 BP; 166 A; 40 C; 88 G; 110 T; 0 other;
     tgtggcgcat acacataggc gtaatgaata taattatagt aagctatata gcagaaatta        60
     tagtaagcta tctttatagg aatagttgtg attggtagaa gcgtgttagt ataggttaga       120
     ataggatagc taatacgaaa agataaggat agaataggta gcataggaaa ttaggcataa       180
     gacggaatta aggatacata ggaagtaaat gaattaagct aggattagat agggaaattt       240
     tagtataaat agcgggatag gatttaggat agtcagataa aagttagact tcataagggg       300
     aaactctgtc caattataga gaaaattata gagagtataa ataaaagtta cagttccaac       360
     aaaacacccc tttttcaatt gtacactaaa agtgatatac caca                        404
//
ID   Gypsy14-LTR_Dpse repbase;    DNA;    INV; 1179 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14_Dpse;
KW   Gypsy14-I_Dpse; Gypsy14-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1179
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1094-1094 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions    6297    5119.
XX
SQ   Sequence 1179 BP; 454 A; 225 C; 266 G; 234 T; 0 other;
     tgggacccta ccaagttgtt ggaatcaaac ataacaatgc gtatgatgtt cagaaagtcg        60
     gaaactgcga tggcccaaag aatacctcat cgtgcgcgga gtacatgaag ccatggtcca       120
     ttggcaacga cgacgacgac gacgacgacg acgacgacga cgacgcattc gggtcgaatg       180
     cttaatcaga atggccgaat gtgggttggt gtaccacaca aaataccaaa tgaagataag       240
     atccctagac gacgagcaac gatgatccca tcactaaaaa gaacgacgaa caacgattat       300
     gccatcacga agaagacgac gagcaagaag agacaagcag agaaataaaa cgacggcggt       360
     accgaaaaga cgcaaaaacg acgacgcccg cagagaagaa gaataaaacg acgcagaata       420
     aagaatacat ttatcctaaa tttatcaaac attaaataca aattaattat taaacataaa       480
     gtaaataaaa accccacatt ttgggcgctc ctccgggaat gaattaaaag ggaatgaatt       540
     cttctattga agaagaaacg aaaatataaa tttttttccc ccacaatgcc gtatttaaac       600
     gatttaatat gtgaaaatct acgctcgagc aagaaagagt gcatagcggc actgcataaa       660
     ttcgtgttcg aggccgaggg agacagaatc aaccgaaaag gattacgcga attttctggc       720
     ttcctctacg acgaaaatga tgagaggtac aaagcaaaga aggaatacgc agtaaataat       780
     ataacacata gtgatcttgt ggctatatgc aatgtgttgg gaatcagtta tactagtgag       840
     gaccttttct tgcatgtgtt ttgcaatttg cgttcgatga ccctgctagc gcatgatgaa       900
     acaagcaacg acgaaactga ggatgaagag gatgatgatg aaaaagaaaa ggatagcaac       960
     aattcgtttg agacggcaga ccatgccaac atagaaaaca ttgcagggaa aaacgaagac      1020
     acagaacaaa gaagacacgc tacaacatac aaacaaatag tggagagaga tatgacgaca      1080
     gcattcaaag tttcgacggc actaatacta tttccagtcg aagtgtggat aacagaatac      1140
     gaggaacagg cgacgctaat gaaaatggaa tgatttcca                             1179
//
ID   Gypsy14-LTR_Dya repbase;    DNA;    INV; 417 BP.
XX
AC   chr3R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14_Dya;
KW   Gypsy14-I_Dya; Gypsy14-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-417
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1095-1095 (2009).
XX
DR   Genome; chr3R; Positions 6836115 6836531.
XX
SQ   Sequence 417 BP; 173 A; 70 C; 90 G; 84 T; 0 other;
     tgtgggagag atatttccac atattcgaat atgaacattg acgacgctct ggacaacgaa        60
     aacgcaaaga caataattca aggaaaacag aagttgaagt cgacgatcaa cataattcaa       120
     ggaaaataga agtcgacgtc gacgatcgca atacgcggaa aaagagaagt tgaaccaaaa       180
     ggaaactacg acgtatatca acgattttca gaaggaagcg actgatccca atatgagcgg       240
     cgagaacgca gacgacgggg gcagtttgtg acgagagccg agagaagacg gaagtattcg       300
     gcgagagaag acttaaacga cgtgaagact attatctaat attaaaatag atgttattaa       360
     ttaaaactat acttatcata ataataaaac atcaatatta ataaataaaa ccccaca          417
//
ID   Gypsy14-NVi_I repbase;    DNA;    INV; 10944 BP.
XX
AC   NW_001820566;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14-NV;
KW   Gypsy14-NVi_LTR; internal portion; Gypsy14-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10944
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1208-1208 (2007).
XX
DR   Genome; NW_001820566; Positions  131000  141943.
XX
CC   Positions [6527-7096] - Reverse transcriptase
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(5453..6883,6887..9718)
FT                 /product="Gypsy14-NVi_I_2p"
FT                 /translation="MVVETQQNIKSKSEEKSEVALNERFETAKVRFLLAGR
FT                 QPPIVKLNSPQLKEGQGTFYADSGADISVLKRGKLAACYPIDTSKIIKIQG
FT                 VTPGASHTLGQAVIKLQGLACNVHIVPNDFPIENSGIIGWDIIDAHRGCVD
FT                 AADQCLRLGKEQIPFESDERVTIPPRVKMIIGARVKNSDVKVGWVPITNIH
FT                 PDILFGNFVAENRNGRVYAECINTSDEEISIANPVIELLECKTMEENPLYQ
FT                 ADGDGSAESTAKFTANLRRMFDISKKVEKYKEVESLNRRLLADEQARIERV
FT                 EKIRKLADLEGCNDEEIGYIRKIISDFPGVFGLDVEPLPATHLLKHKIVLK
FT                 SDKPIKSNRFRFPPALKENMLRELEKLREQGIVVPSNSNYSWSLWIVPKKP
FT                 DAQGNKRFRLVTDFRALNEETEGSCHPLPFTSDILEHLAAANYITVMDLKQ
FT                 GYHQIEMDPESVHLTAFYAPDGRHGNQLLQFSMAMGLKEATITFTKAMSLA
FT                 MKGLQGEEVEIYLDDLMVFSETLDEHKERLRRVLGRLLEANMTVEPKKCQF
FT                 LKKEAHVLGHIVGGGRIRTDPEKTRVMAKYPVPTDAKKLKQAVGLFSYYRR
FT                 FIKDFAKIARPLFLLLQKNAEFVWGEEQETAFNILRELMSKEPVLKAPDMS
FT                 QPFIVTTDSSDWALGAILSQGKLGADQPCAYASRCLKGSELKYPIYDKELL
FT                 AIVFAKEQFRYYLYGRKFTVVTDHESLKHFHNTKKPDLRFNRLKAALVGYD
FT                 FDIVYRPGEKNANADALSRNPVITEGQINPDLPRAELYKLANKQILESPDE
FT                 EAGAPPGRIFRTRAIKRQGIDKDRKIKLSTTSSASSNKSTRIRAKRKPKRV
FT                 IYKAGEYLAIRNVENSFYIGRILLDVLDGDEVVNLRWLTEIDDCKGTYRRD
FT                 YCGKINVECILACVVIKQVGKNMYRLGPNESKRIESILRESIEFCEAAKIG
FT                 RREVNESLIDETSDSDISMQSICTSVAASSRGGVKLPPDLQKYLSYVEPAG
FT                 PVTRSAKQSAKATELYEPSASSSSDTERAAPPSGKTHADLESLQSFKFSAS
FT                 NSSQARSPVNKASSNVSTDRHISSDESARKSMSIGSPRLEPLLGTKKVSNM
FT                 PASWPWGSDGTKRKLAITVEGQVVNGKNGVQILVHERQSTVAPSCSIPRTG
FT                 GCSENLNNAKDKLNAGPAVIDKNKLGPRKEKNLIPTKQLEYQAIGTGNSST
FT                 FADYEGVGPAESFEGISRNYERKPEPSDENSSASSGNVLIQTYIRKNRCAE
FT                 PLVELVRSDDIPNSPAGNCLFFSLIKLAKLHLSATELRELLLESPMLHACG
FT                 EPAETERILRSESEYGNIDCAFLFAHAFKMNVCIHYDVTQSKRIFCHIVVD
FT                 GATDVAHLNLSGLHFTPYDRVKARQRTAKLPEIRRAPSPSGDSDEEMPRSP
FT                 SARKKTK"
XX
SQ   Sequence 10944 BP; 3427 A; 2637 C; 2683 G; 2197 T; 0 other;
     cacaagcatg cggtcctagg tgccaaaatt caagtctaat cgaggaagcg acatcagtca        60
     cgcgtcaagc ggaacgtgtc ctggatctga tgctcgtcaa cgcggcaaac ggagagcagc       120
     atcgcgctcg ccgatctcta ctccccttcg tcggttccat ccataaattt atacgggacc       180
     ctagatgagg acgacaagag agaaattcag gcatcaatta aactcatagc cgacgatacg       240
     cgccaaacag cggcgctatt agctgagcag acggaggtcg tcgaacgcga gctatctgac       300
     ctaggcgata gagtaggcaa actagaggct atcgtagaag ttttagaaga caagaccgct       360
     tctattttca gagaattggg ggctctaaac acaatagcag aaatgaggga tgcactcaga       420
     cagtttagcc tagactcgga agtcctgacg gatgcaatct tattcgcagc gaaaggaatg       480
     gtgcatccgc gcattgtacc cccagataca attcgagacg cagctagaac cgtcgcaaac       540
     tccgtaacca atgccagatt tccgatgccg gaggaagggt ttgcaatcat tcctattatg       600
     aagatttcca aattaacggt gttgttatca gacggatgtt taatctatca gatagcaata       660
     ccgttactcg acattcagag atacaatttg ttcaaagcgt caccgctacc ggcaatccaa       720
     aaagttttta atattcctta tctggcagcc tacatctggc cagagtacaa ctacttcgcg       780
     gttagtgagt caaatcgcac ttacatgccc ttattaccgg aagaggtaac aagccttcga       840
     aggctcgaca agctaatgat cgcggtaaac ccagagccag tgcgggaaat aagaagcaat       900
     gccgcctgcg aggtaaagat cgcgtcgggt cgacaagtct ccaatcccga agtgtgcgac       960
     atcagattca ggcagttgag agataccttc tggttgagac tgcataaagc gaactcgtgg      1020
     atattttccg ccaaatcacc ggaagatata tttatccaat gcctgcgatc cgagcacgta      1080
     gcagcgaaaa taagtggtgc aggcatactc gaactgcaac ccggatgcgc agcgcataca      1140
     gcaaacgctc gcgtcccgcg ctttctcgac taactcaaat caatcaaaat tcgaaactat      1200
     agagtttaac gtatccgaag taattaagct tctaaacgaa tcagaaattg ccgaagcgga      1260
     attcagaaac gcaatcgcat ccgaagcagc gaatcgggta aaaagcttgc acggggtcaa      1320
     gttagaaaac ctaaaagcag gggcgagatt acacgagatc gcaagtaaag cacgtgaaat      1380
     cgcgcacagg aaggcgaccg ccctcgagct cgaaaatttg ggcagcacaa ctgcaatctt      1440
     cgggtggtcc ttaacttcag ccgtaatatc tatagctatc ataatcacaa tcggcggtat      1500
     aatctatcgg cggcgttcga acggagcaat aaatcgcttt gtcaaacagc aagagtctct      1560
     ctttatgctg gagcagatga gcaggtattc acgagagaga aaacgcgccg agcggagtca      1620
     agaataaaaa aaaaaaaaaa aaaaaaaaaa aaaaaattct tatccgctct atattttaac      1680
     tataactatg attatcaatt acgaataagc caagctgcgt accatcatgg acaacgccct      1740
     aatacataat gaaatacaat taagtccgtt tcaattttat acttttgaca atctaacttg      1800
     tataatacat aaccatttac agttagattg atagtatata agaaaattga agcgcttatt      1860
     aaaacagact gctcagcgat gagcaagcta aaaataaata ctgtatctag gttaattttc      1920
     acatatatgc accagaatat gtcaaataat ttttgtgcgt cataaagaca ttctaataac      1980
     catgtaagcc tatcgataac aaccaaatat tcataacaaa cattttataa ccttttgtaa      2040
     gagctccgct cgaaagaaat gtaagacagc agcggctgcc agggtagaaa aacacccggg      2100
     ctcacaacac agacatacat tcagatacta cacacacctt tggattagaa ccccaatcag      2160
     cacctcgcga ggctcaagcc tctggcatcc cacgacacac ataaaataga aatttttttt      2220
     tttaacactt agaacagata cacactcgag cgtacacgcg acctccgtgc gtcgttcctg      2280
     gatagcctgt ttttttttca ggcgacgagg ggcgtcggcc agcgcggtcc gggcgtgtca      2340
     cggacgagcc ccaggctctc cggtgacggc tcgggtcgcc gctgccgacg gcgcatgcaa      2400
     tgctccgtca gcagagaacg gcggactcgg aaggttcgca cgggcaaagg tgcatcgggt      2460
     tgcaccttcg cgcgtgcgac cgctaaccgt cgacgagccg cgtcgatggc aaagcgggca      2520
     gttgatcggc ggcagagctc gcgagcggag ctcacaacct gcaataaagt ttactagagc      2580
     aaggtcagtc gttgtctttg gggcaggacc ccgtcatcac ccgccacatc tggcatccct      2640
     tagcggggcc ccgaaaaacg acacctgcaa tcgatttaaa ttaatcggtt accgagtcta      2700
     aataaaagaa agaacgataa gcagtgcttg tgaatattcg agtgtaaatt cgcaagaatc      2760
     ttaagaagct cgtaagcctc gtgccgccaa agctccaaaa acaaaactcg gggctccacg      2820
     agaaggaagc tgaggtcaca aaaaaaaagt ggctccaact cgcccgtgtg actttgaaga      2880
     aaatcagtca aacggcctca gcaccggaca cccgccggcg tgcgttacct gggcctcagc      2940
     gaagccaact ggccaccatc ctatctgggc caccgaggac cagccgtcgg tgcgcgggtc      3000
     aaccacggaa gcagccacca cgcgcgctca atagtaggcg cggactagcc gtcggcgagc      3060
     gcgatccatc ggacaacatc tcgcagataa catccaccat caagacatca tgcgcccaac      3120
     cttcgtgctt atcatcgcaa tgtaagttgt ccatgatatt tttacgtagc ttggcttccg      3180
     ggtaggtcgc ggtacagccg cattttgttt actttgtttt atcatttccg ggtcttcgtg      3240
     taagtttagg gagtctttag cataagctga gtgcgcgtaa cgcagcgaac atggccccgt      3300
     ctggcctcat tcacgcggcg tggcaagcgg taaaaagctc taaaaccgaa gagagaatgc      3360
     agccgaacac cggaccaaaa aagcagttta aacgggctag agcggttttt agaattacgc      3420
     gaaaaatgtc gcccagatcg caaagagcca cagcgactgc gttaaggtcc ccggtcagcg      3480
     actccagcag cgcgtgcaat gaccaccttt gttctggtcg atcgaaacgg ggttggacgg      3540
     catctcaaag ggacgcaata gaaaagcgca tgaatgaggg ccggtacacc gataaaccgg      3600
     aattatcgga cgaagagagt cccgaacaag gcctcagaga aaacagcgtt atgctacggt      3660
     ctagcatact cccgaacgat gaaaataact gcgcgctgaa gctcggaagc gcggcacagc      3720
     caaatgaatt aaagaacctg gaaaataggc taggcaatct atgcttaagc gagaacaccg      3780
     ttcgcgaaaa tttttttacc ggagtagccg gagtgaagta cgcgccgaaa ctcaaatcac      3840
     ggattagctt gcgcagtagt ccgacccgca gcaactgtcg cgaagtaaat ttttataccc      3900
     tagctcccgc ggagggcaaa tgcgacgcgc agcgggcgat taactaccgg gagaagtaca      3960
     gccgccggcc aggcaggaca agcgcgagaa acacgcgagt ccagcgcagt ctaagcgcga      4020
     gtgcgtctag cgagtccgac gagtacagct gacatagcgg caacagcaac aacagtcgtc      4080
     gtcggcgtag tgatagcgat agcagccgcg gtaacaaaag ggatggcgac gataaatatc      4140
     gaaagcgcgg ggacaaaaat aacgagagac ggcgcaagca cggcgacgac gaagatagaa      4200
     agcgcgatcg atcaaagcag gacaggagcg cgtccggtaa tcgcgatagg tacaggcgcg      4260
     aagatagaaa attaaaaagc gataagcgta ggcgcggcag cgagagtgaa agcgatgcaa      4320
     gtcgcaagca ccgagacaaa tccaggcata gccatccctc tcgtcaaaag aagtattcgg      4380
     atgacgagga tagcgaagcc gaactagtac atccctcggt tgcagaggct gccgtaaggc      4440
     gaatgacctt tcaccaagcg gctagctacg taccttactt tgacggagac cccgacaatc      4500
     tatcaatttt ttgcaacgcg gtccgcaaag tgcaaaagaa gtttggaccc gaaaatgagg      4560
     agttcctttt gatgcacgtc gctaataggc tgcaaggaaa ggccacggag ggatatcgct      4620
     cacgaacagc ccgttataaa actatcgatg aatttttgcg agatctgacc ctacatttcg      4680
     cgaacatcgg cgtcgcccac caaatacagg gtgaaattcg cacgcttcaa cagggcgtat      4740
     tagaatcggc aaacgattac ggcatgcgtg ccgaaaaatt atataatagg ttgagaacaa      4800
     ttataggatg tgccccggac atatccgaat ccgatagggc gtctaaatta cagcaagcag      4860
     acatcgaagc cctcgagcaa tttttactcg gcctaaagtc tccgctcaat ttcctggtac      4920
     agcttaagca gccaaaaacg ttaaactaag caataacatt cgccatcgaa tacgaaggta      4980
     aatagggtac gagaaacgcg cctagtaaca tcgtgagtcc tgtagatccg gtggcacaac      5040
     tgcggttatt attaagcgag ggaattcttc ctaaatcagc acagactgtc aacgaaccac      5100
     cgccacaaac aagtaccacg caggagaatc agcaaggcgc agagaaaatg tgcggttact      5160
     gccaaacaga cacgcacaat acagaagatt gtcgtacgct gatgtttcat gcaaaaaacg      5220
     gaatgatctc gcggccccct cgcaaaccta aaaagaatgg caacagggat cgccgctaca      5280
     ataataaaaa taacaacaag cagaaaaatg gtaataatag cccggacaac gcaacagaac      5340
     acggcaaaaa tttaaactag atagacgttc gccacgttcc ccaggcgacg agtgtcaaaa      5400
     agaaaaagct gtgaacgaag cggcaactaa taatcagccc acaaaaaatc caatggtagt      5460
     ggaaacccaa cagaatataa aatcaaaatc tgaagaaaaa tccgaagtcg cgttaaacga      5520
     gaggttcgag actgctaagg ttagattttt actagctgga agacaacctc caatcgttaa      5580
     actaaatagc cctcagctaa aagagggaca aggtacattc tacgcggact caggggcgga      5640
     catctccgtc ttaaaaagag gaaaattagc ggcatgctat cctatagaca cgagcaaaat      5700
     tatcaagatc caaggcgtaa cgccaggagc atcgcacacg ctgggccaag cagtaataaa      5760
     actgcaaggg ttggcttgca acgtccacat agtgcccaat gacttcccta tagaaaactc      5820
     gggaatcatt gggtgggaca tcatagacgc gcacagaggt tgcgtagatg cagccgacca      5880
     atgcctaaga ctcggcaaag agcaaattcc gttcgagtct gatgagcgtg tgacgatacc      5940
     cccaagggtg aagatgataa tcggagctcg cgtcaaaaat agcgacgtga aagtcgggtg      6000
     ggtgcccata acaaatatcc atcccgacat cctctttggt aatttcgtag ccgaaaacag      6060
     aaacggcaga gtctatgcgg aatgtatcaa tactagcgat gaagagattt cgatagcaaa      6120
     cccagtaatc gagcttctcg agtgcaagac aatggaagaa aatccgctgt atcaggccga      6180
     tggggatggc tcagctgaaa gtaccgccaa gttcacggca aatctgcggc gaatgttcga      6240
     cataagtaag aaagtcgaaa aatataagga ggtagagtcc ctaaatagaa gacttctcgc      6300
     cgacgaacaa gctagaatag aacgagtcga aaaaatccga aaactggcag acttggaggg      6360
     atgcaacgac gaggaaatcg gttatatacg gaaaatcatc agcgattttc caggagtgtt      6420
     tgggctagac gtcgagccac tgccagctac gcacctgctt aaacacaaga ttgtacttaa      6480
     gtcagacaaa ccgataaaaa gcaatcgatt tcgatttccg ccagccctaa aagaaaacat      6540
     gctcagagag ctagaaaagc tccgcgagca agggatcgtt gtaccctcaa attctaacta      6600
     ttcgtggtca ctgtggatcg tgccaaaaaa gcccgacgcg cagggaaaca agcggttccg      6660
     cctagtgact gattttagag cgctcaatga agaaacagaa ggcagttgtc accctctacc      6720
     tttcacgagc gacattttag aacatttggc cgcagctaac tacattaccg tgatggacct      6780
     aaagcaaggg taccatcaga tagaaatgga cccagaatcg gtccatttga ccgctttcta      6840
     cgctcctgac gggagacatg gcaatcagct gttacagttt agctgaatgg ctatgggcct      6900
     gaaggaggcg actataacat ttacgaaagc aatgtcattg gccatgaagg gcttgcaagg      6960
     cgaggaagtc gagatatatc tcgacgacct catggtcttt agcgagacac tggatgaaca      7020
     caaagagagg ctgcgtcgag tactagggcg attgctcgag gctaatatga cagtcgagcc      7080
     caaaaaatgc caatttttaa aaaaagaggc tcatgtactc gggcatatag tgggcggagg      7140
     tcgcattcgc accgatcccg agaaaacacg ggtgatggct aaatatccag tgccaactga      7200
     cgcgaagaaa ctgaagcagg cggttggcct gttcagttat tatcggcgat tcatcaagga      7260
     cttcgccaaa atcgctaggc cactgttctt gctcctacaa aaaaacgcag aatttgtctg      7320
     gggcgaggaa caagagaccg cgttcaacat attgcgagaa ctcatgtcga aagaaccagt      7380
     gcttaaagct cccgatatgt cgcagccttt cattgtcacg acagacagca gtgattgggc      7440
     cctcggcgca attctgagcc agggaaaact tggcgcagac caaccgtgtg cctacgcttc      7500
     acgctgcttg aaaggcagcg aactaaaata tcccatatac gacaaggagc tgttggcaat      7560
     agtgtttgca aaagagcaat tccgctatta tctgtacggt aggaagttta cagtcgtgac      7620
     ggaccacgag agcttgaagc attttcataa cactaaaaag ccggacttga ggtttaatcg      7680
     cctcaaagcc gccttggtcg gttatgattt tgacatagtg tatcgccccg gcgaaaagaa      7740
     tgccaacgca gatgctcttt cgcgaaatcc ggtgatcacg gaggggcaaa ttaatccgga      7800
     ccttcctcga gcggagttat acaagctggc caataagcaa atcttagaaa gccccgatga      7860
     agaagcaggt gcccctccgg gaagaatatt tcggactcgc gccataaaaa ggcaaggtat      7920
     cgataaagat cgtaaaataa aattgtcgac aaccagttca gcaagctcaa acaaaagcac      7980
     gcgtataaga gcgaagcgca agccgaagcg cgtgatctac aaggcgggcg aatacttagc      8040
     gataagaaac gtcgaaaata gcttttatat aggccgcata ctcttagacg tcctcgacgg      8100
     cgacgaggtt gtgaatctgc gctggttaac tgagatcgat gactgtaaag gtacgtacag      8160
     acgcgattat tgcggaaaaa taaacgtaga atgcattttg gcatgcgtgg tcatcaagca      8220
     ggtgggaaaa aacatgtatc gcttaggacc aaacgagagc aagcgcatcg aaagtattct      8280
     aagagagtcg atcgaattct gcgaggcagc gaaaattggc cggcgtgaag tcaacgaaag      8340
     cttaattgac gaaacatctg actcagacat atcgatgcaa tcgatatgca cctctgtcgc      8400
     tgcaagcagc aggggtggcg taaagttgcc tcccgacctt caaaaatatt taagctacgt      8460
     cgagccagca ggccccgtaa ctcgcagtgc gaaacaaagc gcaaaagcaa cagagctata      8520
     cgaacctagt gcatctagta gcagcgatac cgagagagca gcaccgccct caggaaaaac      8580
     gcatgcagac ttagaatctc tgcagagctt taaattctcg gcaagcaatt cgagtcaagc      8640
     tagatccccg gtaaacaaag cttcatcgaa cgtaagcacg gaccggcata tttcgtcgga      8700
     cgaatccgca agaaagagca tgtcgatcgg gtcgccccgt ctagaaccgc tgttaggcac      8760
     taagaaggta tctaatatgc cagcaagctg gccatgggga agcgacggta ccaagagaaa      8820
     actggcgatc accgtagaag gacaggtggt taatggaaaa aacggtgtac agattttggt      8880
     gcacgagcgg caatcaaccg tcgctccgag ttgcagtata ccaagaaccg gggggtgctc      8940
     tgaaaatctt aataatgcta aagataagct gaatgctggt ccagcagtta tcgacaaaaa      9000
     caaactcggc cccagaaaag agaagaatct gatccctaca aagcagctcg aataccaagc      9060
     catcggtacc gggaattcca gcacattcgc agattacgag ggtgtcggcc cagctgaaag      9120
     cttcgaaggg atatctagga attatgaaag gaagccggaa ccatcagacg agaactcctc      9180
     cgccagctcg gggaacgttt taatacaaac atatatacgt aaaaaccgtt gtgcagaacc      9240
     actggtcgag ttggtgcgct cggacgacat tccaaactct cccgccggta attgcctgtt      9300
     cttctcctta ataaaattag caaaattgca tctatcagcg accgagttaa gagagctcct      9360
     cctcgagtcg ccaatgcttc acgcttgtgg agaaccggcc gaaactgaaa gaattttgcg      9420
     ctctgagtcc gaatacggaa acatcgactg cgcgttcctc ttcgcgcatg cctttaaaat      9480
     gaacgtgtgc atacattacg atgtaacaca gagcaaacgc attttctgtc atatcgtagt      9540
     ggacggcgct accgacgtgg cacatttaaa tctatcggga ctacacttta cgccatacga      9600
     ccgcgtgaag gctcgacaac gcaccgccaa actacccgag atacgacgcg cgccttcgcc      9660
     ctcgggcgac agcgatgagg agatgccacg ctcccccagt gctcggaaga aaacgaaata      9720
     gaaaacctaa aggatgggtg atagacaatc aaagtaaaac tcgcgagccc gaagataacg      9780
     aaaagggcga acgctgcgga agcaatcaag aatcgatcgc taatcaatcg cctgtcgaat      9840
     catcaccagg agcaagtccg aacaatcacg gcgatcaacg aagtagcgcg tgacctcccg      9900
     ctgacaatcc tcagcgaagc ccaaccgagg acgaggtgta tcctgcacaa gagcccaatg      9960
     agtcgccgaa cgagcaaagc ccacacggtc cgctgcagac aaacgcagca gctgtctcgg     10020
     catgcgacat cggcgctagt aacaggggcg atgggcgtac cgacgcgatc gcggctgctg     10080
     tgatcaaaga cgcactcgac agtagcaaca aacttaagca gtgcgtcgtc gcaaaagcga     10140
     gaccgccacg cgagaaacca ccatgggcga tagctaacgg gcaagtgata tcgccgtttg     10200
     tacacttgaa atcctacaat gtacacccat atcggtatag agagaatatg gtgtatttgg     10260
     tctcggcgga cgattattta ggaactgaag tccagagatc cctcatcgaa aggggttacc     10320
     gaaagagcga tgaattgcaa aataaaggat ttaaagtcgg agaaataaac gtaacatcgt     10380
     gtcaagggtt ggctctggta ggcgtataca tcaaagcgca catagacatc cgaccgttaa     10440
     aagcggaaat ccgtaaatgc ttacgtacgc tcaaaaacgt gctgaggtca aaaaacatta     10500
     acagcttcgc cataatccgc gatctcgaaa tactaactca agccgaatgg gacaaatgca     10560
     tcgagttatt cgataactta ttcgcaaacg agaaaatagt tgccgtactg tataaagata     10620
     acctgccagt accaccggtg aatttgcgct ataaagtaat caagcaatac cacgatgcag     10680
     ctatgggcgg ccatcacggc gtgagcaaga cgtacgggaa gatcgccaac gacttctatt     10740
     ggaaaaacat gcggcaagac ataaagaaat ttgtcgcccg ctgtccgact tgcatgacta     10800
     acaagttagt gcgattaaaa accagattgc caatgctaat tagcaatact ccggccatgc     10860
     ctttcgatca gattgccatg gacttttacg ggcccctgga ggcgtcggac aagggaaata     10920
     aatatatttt atcaattcag gata                                            10944
//
ID   Gypsy14-NVi_LTR repbase;    DNA;    INV; 968 BP.
XX
AC   NW_001820566;
XX
DT   20-DEC-2007 (Rel. 12.12, Created)
DT   20-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14-NV;
KW   Gypsy14-NVi_I; Gypsy14-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-968
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(12), 1207-1207 (2007).
XX
DR   Genome; NW_001820566; Positions  130032  130999.
XX
SQ   Sequence 968 BP; 322 A; 229 C; 201 G; 216 T; 0 other;
     tgctcactaa atacatagtc cttactccaa ctcggcacgc caacgcgaaa gaagtagcgc        60
     gagtattgac tgaaaaggta atatgcgtgt ttgggccgcc agccgccatc gtaactgatc       120
     agggaaccca ttttcaaaat aaagtattgg aaaaacttgc tgcaattttc ggtatagaga       180
     aattcagcac gacggcatac catccgcagt caaatgggtc catagagcgg atgcaccaca       240
     ctctaaccga atacttgcgc aaatacgtaa agaaaatcaa caagtgggat gaatggactg       300
     cattgtgcca gcacgcatac aactcaaccg agcatgaaag tactcgctac tcaccgcacg       360
     agttgctgtt tggatttaag ccgcgtactc catcgagctt tcctcgtgct gcaaacgtat       420
     tgtcctacaa cgaatatata gataatatga cgtcgaattt gaccttactc caaacaacgg       480
     cggcgatgaa cctcgttcag tcaaagtaca ggtcaaaaca ttattacgac ggaaagctaa       540
     acatgaaaca tttccgggag ggtgagttgg tattcttgtt aaaagaaccc agaaagggta       600
     aatttgccac cgaataccaa ggccccttcg aggtaatcaa aatcaaccga gcaacgaaca       660
     acgtaaaaat ccaaaacggt gaaatagtaa aaaccgtaca cattaataaa attcaccggc       720
     cgagtgaact tgcaactagg tcggaaagct tcgacgaaca gcccgaggaa tagtcgtttt       780
     tttaccgttt ttttttgcgc ggcaccgggc gtgcgcggta ctacgcaaaa attatttaaa       840
     cacctaaaca aaaaaaaaac ggtgaagcca tcaaaacagc ccagtgagcc aagcggtaca       900
     tttatttttc caactaaaat cggtcaaaaa catcgttcgt ttttcagagc gatcagtacc       960
     cgcgccca                                                                968
//
ID   GYPSY15-I_AG repbase;    DNA;    INV; 5806 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY15-I_AG is an internal portion of retrotransposon GYPSY15_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY15-I_AG; GYPSY15-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY15_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5806
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY15_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 171-171 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY15_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY13_AG,
CC   GYPSY14_AG, GYPSY16_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY15-I_AG consensus was reconstructed after multiple
CC   alignment of 6 copies.
CC   The consensus encodes the 424-aa GYPSY15_AG1p gag-like protein
CC   (pos. 857-2128) and the 1223-aa GYPSY15_AG2p (pos. 2089-5757).
CC   The sequence of the LTRs flanking GYPSY15-I_AG is deposited as
CC   GYPSY15-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           2089..5757
FT                 /product="GYPSY15_AG2p"
FT                 /translation="FFRPLSSIRKYPILTINTDADNFVKVKIEIAKEIYST
FT                 LIIDTGATVSVLKASKLKPGCKINTSKKLTLISSSDHESETLGTAMTTIHF
FT                 GDYSIIHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLI
FT                 SHPIEDNVNGNYILPKRSEVVRKITIPNLTEDSIILSQEIQPGVFCGNTIV
FT                 SKRNQYIKFINTTDKDVSFEIKSYTPEIEPLRDYEQLQRKPNTARERIEKI
FT                 HNKIRIENIPQIAREELENLITKFSDIFCLEDEPVSTNNFYTQEISLKDNI
FT                 PFYIPNYKQIHSQSEEMQSQVEKMLKSNIIEHSVSSYNSPILLLVPKKSVE
FT                 GKKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFH
FT                 QIKLDKNSRKYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLTPE
FT                 LAFVYIDDIIVTGCSARHHISNLGEVFDRLRKYNLKLNAEKCCFFTTEVTY
FT                 LGHKITDKGIYPDDAKFDTIKNFPIPTNADEARRFVAFCNYYRKFVQNFDK
FT                 IAKPINHLIKKDVKFAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITT
FT                 DASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAIN
FT                 YFKPYVYGPKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLA
FT                 GKANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMVKKNNVKTDTNKD
FT                 KPIATTGTDHPAMWKTDRPSEVRKVLKICTQRNKNNVEFIIYNHSYGKALG
FT                 KFLLRKDVNGSQALEFALLEMCKIAKQYGRNKLAWSEEDHLFKEYSQQTIK
FT                 EIANRAITKFEIILFTPTRWITTEKDRLRIISDYHMTPSGGHIGQYRLYQK
FT                 IREKYKWKNMKFDIKKYVRNCKACIVNKTTRHTKEDTVVTTTPTKPFNIIS
FT                 IDTVGPLTKTNKNNRYAITIQCDLTKYIVVIPIHNKEANTIARALVENFIL
FT                 TFGTFIELKSDQGLEYNNEILHKISEILKIKQTFSTAYHPQTIGSLERNHR
FT                 CLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHTDTNYTPYELVFGRKANL
FT                 PQDIFKTKIEPVYNIEQYYFEMKYKLQKSNEIARENLIKAKNRRQQILNKD
FT                 TVPLIIKIGDQVYLENENRKKLDPVYIGPFTVVRDQGPNCVIQNNTTKKTS
FT                 TVHKNRLIKYTGE"
FT   CDS           857..2128
FT                 /product="GYPSY15_AG1p"
FT                 /translation="GCINMQKLFEKIEILDRIYDQVKQLNRCYRLCALTTL
FT                 RDNTKEIYDEIQELLRKHESSIKDEILTKLVKKSRYVYYEINKCIKIHFER
FT                 HPDSLNTTLSENQFDITIETKPDKMADIMELIKITTSLISKYDGNEKDLKG
FT                 VVSNLNVLKKIVKPENKETVIELVLGRLTGKARIVVGETPTSIEDIVSKLQ
FT                 DRCSIKVTPEIVVSKMDNTKQTGTIEDFGSVIEKLTQQLEEAYIAEEIAPE
FT                 VARKKATKSGISALSYGLKDGETKIIMRSSKFETLHEAIEQAVKLELEDRT
FT                 KKGKNDQTKILYSNATRNNRGYGNNYQGRNNFNKFSNNNRYQTQIPPRFPP
FT                 ARYGQNNNRNNNNFRYNNNNTNNNRNQHANRQNYSNRNQYVQSNRNNSNWQ
FT                 NNRAPIHNTVTAEEQNNFLGHSQVSENTLY"
XX
SQ   Sequence 5806 BP; 2404 A; 981 C; 1012 G; 1409 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac gggcagaagt ataaacaaat tatttgtgat        60
     acgtacaacg gtaacgtaca gcagtgtcgt gctaacgcat caaatagtgt aaaaaaaaag       120
     tgcgtttttg accataaccg gtatacgacg gaaaaaagtg tcaaatgtgc aaatttgtat       180
     tgaacaacgc agctggcaca agtgacccat atataaaaaa aaaaacaatc gctatgaatg       240
     agcgaccaaa agcaaataca gtgtggtgta caaaatgaca actcatcgaa aatataagtg       300
     atgaaccgtt tgaagggcga aaaaaaagtg atgtacagca atacaaaaaa ataaagtgtt       360
     gtgacaacct tcctcaacgt gcaaaaatgc aacaacatta taaataaacc cttaagtgat       420
     cagtttgcaa actagaacaa tcttgaagtg attaataacg caacgaaccc aaaccaacgt       480
     aagcggaaat aacgatgtca cagtgctgtg aaaccataag cagaagtgat gttcatctga       540
     aaggtgatag aatgaatggc gagactacgg tatacgagat gtgactagtg tgattgaatg       600
     gaacaaccgt tcccaacgtg gaagacgaaa agatactgcg agctcactgc ccaatctgga       660
     tcggcagacg agaatggaca agtatcccaa ccccgacaag acatcgagcg acaactgatg       720
     acaccgtaga acttcacatc aagcaccaat taaacaccga gcaccggtaa cgagcgttac       780
     accatgagca gcaacaacaa caaatacatg ctatgtattt aaacaaggta ccgtaaatat       840
     gcaattttat tgatgaggct gcataaatat gcaaaaacta ttcgagaaaa tagaaatatt       900
     agatagaatt tatgatcagg tgaaacagct gaacagatgt tataggcttt gcgcgttaac       960
     aacattaagg gataatacta aggaaatata cgacgaaata caagaactcc tacgaaagca      1020
     cgaatcgtct attaaagatg aaatattaac aaagctagtt aaaaagagta gatacgtata      1080
     ctacgaaata aataagtgca taaaaataca cttcgagaga catccagatt cgttaaatac      1140
     gacattatca gagaaccaat ttgacataac aatagaaacg aaacctgaca aaatggctga      1200
     cattatggaa ttgattaaaa tcaccacttc tctcatatca aagtatgatg gtaatgagaa      1260
     ggatttgaaa ggtgtggtgt caaacttaaa tgtattaaag aaaatagtaa agccagaaaa      1320
     taaagaaaca gtaatagaac tggtactagg acgtctaaca ggaaaagcac gaattgtagt      1380
     aggggaaacc ccaacttcaa ttgaagatat agttagcaaa ttacaagaca ggtgcagcat      1440
     aaaggtaaca ccagagatcg tagtatcaaa aatggacaat actaaacaga ctggaacgat      1500
     agaagatttt ggaagcgtta ttgaaaaatt aacgcaacaa ctagaagagg catacattgc      1560
     agaagagata gcgccagaag tagctagaaa aaaggcaact aaatcaggaa tcagtgcatt      1620
     gagttatgga cttaaagatg gcgagaccaa aattataatg agatcgagta aattcgaaac      1680
     cttgcatgaa gcaatagagc aagcagtaaa gttggagcta gaagatagaa cgaaaaaggg      1740
     aaagaatgat cagacaaaga tcctatattc aaacgctacc aggaacaata gagggtatgg      1800
     aaacaactac cagggaagga acaatttcaa caaattctca aataataata gatatcagac      1860
     acaaatccca cccaggttcc cacccgcaag atatggacag aacaacaaca gaaataacaa      1920
     taacttcaga tataacaaca ataacactaa caacaacaga aatcagcatg caaatcgaca      1980
     aaattattcc aacagaaatc agtacgtaca atcaaataga aataatagca attggcaaaa      2040
     taatcgagcg cctattcata acacagtaac agccgaagaa cagaataatt ttttaggcca      2100
     ctctcaagta tcagaaaata ccctatacta accataaaca ctgatgcaga taattttgtt      2160
     aaagttaaaa tagaaattgc aaaggaaatc tatagcacac tcatcataga tacaggagca      2220
     accgtatccg tacttaaagc tagtaaatta aaaccaggtt gcaagatcaa tacatctaaa      2280
     aaattaacat tgataagctc tagtgaccat gaatcagaga ctttaggtac tgctatgaca      2340
     acaattcact ttggtgatta ttccattata cacgaatttc atataataga agacgtagaa      2400
     tccatttttt ctgacggact gttaggaaaa gactttataa agcacagatg tattgttgat      2460
     tatgttaatt ggatgatata cttctcatct gataacggat tgatttcaca tccaatagaa      2520
     gacaatgtaa atggaaatta tattttacca aaacgaagtg aagtagtacg aaaaataacc      2580
     ataccaaact tgacagagga ttcaatcatc ttatcacagg aaatccaacc aggagtattt      2640
     tgcggaaaca caatagtttc aaaacgtaat cagtatatca aattcattaa taccacagat      2700
     aaagatgttt cttttgaaat aaaatcctat acaccagaaa tcgaaccttt aagagattat      2760
     gagcagctac agagaaaacc aaacacagct agggaacgaa ttgagaaaat tcataacaaa      2820
     attcgcatag aaaatattcc acaaatagca agagaagaat tagaaaattt gatcacaaaa      2880
     ttctcggata tattttgttt agaagatgaa ccggtctcta ctaacaattt ttatacccag      2940
     gaaatttcat tgaaagataa cattcctttt tatataccaa attataaaca aatacattca      3000
     caaagtgagg aaatgcaatc gcaggtagaa aagatgttaa aaagtaacat tattgaacat      3060
     tctgtttcgt catataattc accgatacta ctattagtac caaagaaatc agttgaaggc      3120
     aagaagaaat ggcgtttagt tgtggatttt cggcagttaa acaagaaaat tttaccagac      3180
     aaattccctt taccccgcat agacacgata ctagatcagt taggaagagc caaatatttc      3240
     agcacattgg atttgatgtc agggtttcat caaatcaagc ttgataaaaa ttccagaaaa      3300
     tatacagctt tttccacgcc tacaggccac tatcagttta caagaatgcc atttggactc      3360
     aacattagcc caaacagttt tcaaagaatg atggctatcg ctatggctgg tttaacacca      3420
     gagctagcat ttgtatatat agatgatatt atagttactg gatgcagtgc acggcatcat      3480
     atcagtaatt taggtgaagt ttttgatagg ctaagaaagt ataaccttaa actaaatgca      3540
     gagaaatgtt gtttctttac aacagaagta acgtatttag gtcataaaat aacagataaa      3600
     ggaatctatc cggacgacgc gaagtttgat acgattaaaa acttcccgat tcctactaat      3660
     gctgatgaag caagacgttt tgtcgcattt tgtaattatt atcgtaaatt tgtacagaat      3720
     tttgataaga tagctaaacc aattaatcat ttgattaaga aagacgttaa gtttgcatgg      3780
     acttcagaat gtcaagcagc tttcgataca ttgaaacaaa gcttactctc acccacaatt      3840
     ttacaatatc cagattttaa aaagcaattc ataattacga cagacgcatc ggatatggca      3900
     tgtggtgcag tgttatcaca aataacagat ggaaacgatt taccagtcgc gtttgcgagt      3960
     aaaagtttta caccaggaga gaagaataag ccaataatcg agaaagagct tacagctata      4020
     cattgggcaa ttaattattt taaaccttat gtatatggtc caaaatttat agttagaaca      4080
     gatcatagac cattagcata cttatttggt atgaaaaatc ctacttctaa acttactaga      4140
     atgagactag atttagaaga atttgacttt gaaatagaat atttagcagg taaagctaat      4200
     gttgcggcag acgcactatc aagaataatc cttaactcgg atgacctaaa ggcatcaata      4260
     ccaaaatcca aaacgatttt aatggttaat acgagagcca tggttaagaa aaataacgtg      4320
     aaaactgata caaacaaaga taaaccaatc gcaacaacag ggactgatca ccccgcgatg      4380
     tggaaaacag atagaccttc agaagtgaga aaggtattga aaatatgtac gcagagaaat      4440
     aagaacaacg ttgaattcat aatatacaac cattcatatg gtaaagcact aggaaaattt      4500
     cttttgagaa aagatgtaaa tggaagtcaa gcattagagt ttgctcttct agaaatgtgc      4560
     aaaatcgcga aacaatatgg aagaaacaag ctagcatggt cagaagaaga ccacttattc      4620
     aaagaatatt cccaacaaac tattaaggaa atcgccaaca gagctattac caagtttgaa      4680
     ataatcctgt ttactccaac tagatggata acaacagaga aagataggct gagaataatt      4740
     tcagattatc atatgacccc ttcgggagga catataggcc agtacagact gtaccagaaa      4800
     ataagggaaa aatacaaatg gaaaaatatg aaatttgata tcaagaaata cgtacgaaat      4860
     tgtaaggcat gcatagttaa taagacgact agacatacta aagaagacac agttgtaact      4920
     acaacaccga caaaaccttt taatataatt tcaatcgaca cagtaggacc tctaacaaaa      4980
     actaacaaaa acaacaggta tgcaataacc atacaatgtg acttaacgaa atacatcgta      5040
     gtaataccta tccataacaa agaagcaaat actatagcaa gagcattggt agaaaacttt      5100
     attcttacat ttggaacatt tatagaatta aaatcagatc aagggctaga atataacaat      5160
     gaaatattac acaaaatctc agaaatctta aaaattaaac agacttttag cacagcttac      5220
     cacccacaga caataggatc attagaaaga aatcatagat gtctaaacga atacctaaga      5280
     agttatacaa acgaacatca tgatgactgg gatgattgga caaaatttta cgaatttgtt      5340
     tacaatacaa cagaacacac tgacacaaac tacacaccat acgaactggt attcggaaga      5400
     aaagcgaatt taccacaaga tatattcaaa acaaaaatag aaccagttta taatattgaa      5460
     caatattatt tcgaaatgaa atataaactc caaaaatcaa acgaaatagc tagagaaaat      5520
     ttgataaaag caaagaatag aagacagcaa atcttaaata aagatacagt accactcatt      5580
     ataaaaatag gagatcaggt atatttggaa aatgaaaaca gaaaaaaatt agatccagtc      5640
     tacattggac ctttcacagt agtaagggac caagggccta attgcgtaat acaaaacaat      5700
     acaacaaaga aaacctctac agtacacaaa aacagactaa ttaagtacac aggagaataa      5760
     cttcaatcat tgtaattcat tacgttattc tattaaaggg gggagg                     5806
//
ID   Gypsy15-I_Dpse repbase;    DNA;    INV; 6155 BP.
XX
AC   Unknown_group_825;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy15-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6155
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1096-1096 (2009).
XX
DR   EMBL/GenBank/DDBJ; Unknown_group_825; Positions   17445   23599.
XX
CC   Positions [5196-5693] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1216..2841
FT                 /product="Gypsy15-I_Dpse_1p"
FT                 /translation="MPVDRSPDYRIQPKESETVCCVCTQEVEYPGQLLATS
FT                 CNHYFHHTCFSARSGNKKVCPVCRTALSKSTLNLAEKLEAAQASGHQPRAV
FT                 SVTRSRSKTLKSQQNQLSAANMQSGGRSISQPEGPSVSGPMAAPDRPRGQP
FT                 PNPAAAVVSASAARTGLPATDGSVQQTIADAVAAALAQHTQMLANAIEAGF
FT                 QRLSLQNAAPVPTERVHPAHRQSSPVRSNQSFEQLFRLSARENAALPNSES
FT                 ERPTNLSASPESQQSHQLRADRISQIIANWKLRFSGRSTMSIDDFLYRVEA
FT                 LTSQTLDSNFELLSRYASNLFEGSAGEWYWRYHKSVPRVRWIDLCIALRSQ
FT                 FSDGRTDLEIRTAITQRKQKLNEPFDSFYEAIVALADKLVQPMTEQSLLEV
FT                 LRANLLNDIQHEILYVPIQNIVQLRQVVRKRERFIENTAKPIPATRRFVPR
FT                 NQVNEMSIQTEGPAESDSEEADAFDIDAMTLSCWNCNKQGHRYQECEAERK
FT                 VFCYGCGKRDTYKPSCRKCSSSKNELARAPLSSARKLVSKATNTE*"
FT   CDS           2880..6065
FT                 /product="Gypsy15-I_Dpse_2p"
FT                 /translation="MITTTMTPLQDDDQETTPAPSKTRDRKRRKLFRTQSK
FT                 NTRRAILSSVISNITDLRPYANVTLFGKTISGLMDTGASISCLGGKFAEEL
FT                 ARTNPEVKPMKSAVRTADGKKQVILGRISTLICFRGNAKRICLYLVPSLSQ
FT                 ELYLGIDFWRSFNLLPFFLMSKANNNSLAAINFDNPMQIPLSELQQKELVA
FT                 IVQMFPSFAEKGLGKTNWLTHDIEISETRPIKQRHYAVSPAVEKCIYEELD
FT                 RMLGLGVIEESDSPWSSPVVIVRKPGKVRLCLDSRKVNGVTVKNAYPMPLI
FT                 DGILSRLPKAQFISSIDLKDAYWQIPLSPRAREKTAFAVPGRPLYQFTVMP
FT                 FGLCNAPQTMSKLMDKVIPPSLRNEIFIYLDDLLVISESFEKHMSVLKALA
FT                 DRLSQAGLTINVEKSKFCLKEVKYLGHVIGYGMIQTDPEKVTAIREFPVPR
FT                 SVKQGRRFLGTTGWYHKFIKNYAGIAAPISDTLKKRRSFVWTNEAQRAFES
FT                 LKDQMCGAPVLHSPDFTIPFAIHCDASHTGVGGVLMQTDSDGNDIPIAFMS
FT                 RKLNQCQRNYSVTEKECLAAIMCVKKFQAYVEGHEFSIHTDHASLKWLMSQ
FT                 SDLSSRLARWALKLQGFNFKIFHRKGSQNVVPDALSRVHTEDLSAFSCEGL
FT                 VDLQSDCFKSAEYLELIRKIECNQTQMPDIKVIDNHIYRRAEHAAADQIAD
FT                 DLCWKLWVPKELVSDVLKQSHEQSLAAHSGINKTLERVRRYYYWPSLVTDV
FT                 RAFINSCSVCKCTKYPNRSLRPPLAPVKETQRVFQKLFVDFLGPYPRSKSG
FT                 NIGIFVVLDHLSKYPFLKPVKIFTAEAITRFMEEDLFHCFGVPEVVVSDNG
FT                 VQFKSHHFNSLLKKYNVQHFYTAVYAPQANASERVNRSVIAAIKAYIKPDQ
FT                 TNWDEQLSSISCALRSSLHSALNDSPYRVAFGQHMITNGDTYQLLRNLQVL
FT                 EDRTVSFGREDSFDVIRKTAQRTIQKQHQRNEQQYNLRSRDVAFKVGQEVY
FT                 RRNFQQSNFIKGFSAKLAPTFVKARIKRRLGHSYYELEDPQGRLIGKYHAK
FT                 DIKQ*"
XX
SQ   Sequence 6155 BP; 1731 A; 1402 C; 1462 G; 1560 T; 0 other;
     gtaataatta ttttatttgg cgcccaacgt ggggccccga aaggcccgaa ggtcagggtt        60
     gacgtaattg taaaccttac aaagcgaagt cacattaaca tatatggttg tgtgtgaccc       120
     cagccaacct tgactccgaa gcagaaaaat ttttgagaaa gtccataaca cctgcgagca       180
     gtgcatagtc atgcactggc ctaagacttt tgttccccgt ttcccacccc cttccttaaa       240
     tcccttcctt ttgtcctggg attggatact gtgatggtgg atgctgatta gtttccgata       300
     acgtttagcc cgcatcggaa taggatccat aacccctgtg cgatagtaag atgttctgga       360
     accgataata gcttcaacat agctttattg ccgagcagta tatgccatag cagtgagatc       420
     taaatggatt cactggtatg tggaagttgg ctggacacag ggttattcgt ggagtaaatc       480
     tacgacctgc cgctatacag aagcgtatta gtgaacacat tctcccgtat cccttggaaa       540
     ttgacaggta tcctgggtag ttttgtttca gttgtcgccg gagtcagcta gaagaattaa       600
     cagatttttt tgttgccgct caactcgaat cggggttctt agggtgcctc cgtcttttgt       660
     ttctctctct actttctagt gattggtcta ttcgtgcgcc gatttataca gcaggttatc       720
     gccggccgaa cgtggtaccc ctggtgctgg tgcgtttctt cgtgctacgc ttccggcccg       780
     gaccgataat ggctgcggaa aaggtatagg tcgtagcatg cataaactaa tacaaactcc       840
     ccgtaaccgc ttcggtaatg tgtcttcgat tggcggctga cgagcaccgt cgtgatcctg       900
     gtatgggcac gcgagcaaga aagtcgtccg tccctatgtt taggcattcg ccgcagacaa       960
     gatgtggcct agagctgcta cttgggtcac ggttgccgaa gatacctttt ctttatttct      1020
     ccctttatcg ctctaccacg tatagttatt ggcaaccttc tcggagggaa agggttgcat      1080
     ggtttcccca aatctcttta tgaaatatcg ttttttttga gttgtccccg ttattattgt      1140
     ttgtcgttaa tatttgtctg aactagattt ataggaaagt gcttaaagct agttaatata      1200
     taggataact ttacgatgcc ggtagaccga agcccggatt ataggattca gccaaaagag      1260
     agcgaaaccg tttgctgtgt atgtacgcaa gaagtcgaat accccggcca gctattagct      1320
     accagctgta accactattt ccatcacacc tgctttagtg cacgttcagg aaataaaaaa      1380
     gtctgtccag tgtgcagaac tgcgctgagc aaatcgaccc ttaatttggc agaaaaacta      1440
     gaagcagctc aagcctcagg ccaccaacca agagcagtgt cagtgaccag atctcgatcg      1500
     aaaacactaa aatcacagca aaaccaatta tccgctgcca atatgcagag tgggggccga      1560
     agtataagcc aacccgaagg gcctagtgtt tccggtccaa tggccgctcc agatcgtcct      1620
     agaggccaac cgccaaaccc tgcggcagca gtggtgtcag cttccgcagc tcgaactggt      1680
     ctgccagcca cggatggtag cgtgcaacaa accattgcgg acgcagtggc agccgcacta      1740
     gcacagcaca ctcaaatgct agctaacgcg attgaagcgg ggtttcaaag attgtcgctc      1800
     cagaatgcag ctccagttcc aacggaaagg gtacacccag cacataggca gtcatctccc      1860
     gttaggtcaa atcaatcctt tgagcaactc tttaggttat ccgccaggga aaacgcagcc      1920
     ttaccaaact cagagtccga gcgaccgact aacttgtcag cttcacccga gtcgcagcaa      1980
     tcacatcagt tgcgcgcgga tcggattagc caaataatcg cgaactggaa gttgagattc      2040
     tcagggcgct ccactatgtc aatagatgat tttttgtatc gcgtcgaagc tctgaccagc      2100
     cagacattag acagcaattt tgaattgtta tctcgttacg cgagcaacct gttcgaagga      2160
     agcgcgggtg aatggtactg gaggtatcat aaaagcgtac caagagtgcg ctggattgat      2220
     ctctgtatag ctctgagatc gcagttttcg gacggcagaa cagatttaga aatcagaacc      2280
     gcgatcactc agaggaagca gaaactcaac gaaccgtttg acagtttcta tgaggccata      2340
     gttgcgcttg cagacaagct tgtgcagccc atgaccgagc agtccttgtt agaggtgtta      2400
     cgagcaaatc tgctcaatga catacaacat gagattttat atgtgcccat acagaacatt      2460
     gtgcagttgc gacaagtggt acgcaagcgt gaaaggttca tcgaaaacac tgctaagcca      2520
     atcccggcta ctcgacgatt tgttcctcgc aatcaggtga acgaaatgtc catccagaca      2580
     gaaggtcctg cagaatccga ttcggaagaa gctgacgctt ttgatatcga cgcgatgacg      2640
     ctttcttgct ggaattgcaa taaacaaggc caccgatatc aagagtgcga agcagagcgt      2700
     aaggtgttct gttatggatg tggtaagcgg gacacatata aaccatcgtg ccgaaaatgt      2760
     agctcgtcaa aaaacgagtt ggctcgtgca ccgctatcga gtgcacgcaa attagtgtcg      2820
     aaggcgacga atacggagta accagggcaa cgtcaagctc actcccacta ctccctgaca      2880
     tgataacgac cactatgaca ccattacagg acgacgatca ggaaacgacc cctgcgccta      2940
     gcaaaactcg agaccgtaag cgtagaaagc tgttccgcac gcagagtaaa aatacacgca      3000
     gagcaatatt atcctctgtt attagtaata taactgatct acgaccctac gccaatgtca      3060
     cgctgtttgg caagacgata agtggattga tggacacagg cgcctcaatc agctgccttg      3120
     ggggtaaatt tgcagaagag ttagctcgaa caaaccctga ggtcaagccg atgaagtcag      3180
     ccgtgcgaac cgcagatggg aaaaagcaag ttattctagg taggatctcc acactcattt      3240
     gctttcgtgg aaatgcaaaa cgaatatgtc tttatcttgt accatcgtta tcgcaggagt      3300
     tatatctagg aatagacttt tggagaagct ttaatctatt gccgttcttt ttaatgagca      3360
     aagcgaataa taacagtttg gcggctataa attttgacaa cccgatgcaa atacctttgt      3420
     cggaattaca gcagaaggaa ctagtagcga tcgtacagat gttcccttcg tttgccgaaa      3480
     aaggattagg aaagacaaac tggcttacac atgacataga aatttcagag actcgcccca      3540
     taaaacaacg tcactacgca gtttcgcctg cagtcgaaaa atgtatatac gaagaattgg      3600
     accgaatgtt aggccttggt gtgattgaag agtcagatag cccgtggtct tcccctgtcg      3660
     tgattgtgcg taagccaggt aaggttcgcc tttgccttga tagccggaaa gtgaacggag      3720
     taacagtcaa aaatgcttac cctatgcccc tcattgatgg cattttaagc agacttccaa      3780
     aagcgcagtt catttcaagc atcgatctta aagatgctta ctggcagatt ccgcttagcc      3840
     caagggctcg ggagaagacg gcttttgcgg tgcctgggag gccattatat caattcacgg      3900
     tgatgccgtt tggcttatgc aatgccccac agaccatgtc caaactgatg gataaagtta      3960
     tcccaccatc tttgcgaaat gagattttca tttatctcga cgacttattg gtgatttcgg      4020
     agtcattcga gaagcacatg tccgtgttga aagcgctggc cgaccggctg tctcaagctg      4080
     gtctgacgat aaacgtagag aagagcaaat tttgtctgaa ggaagtgaaa tacctgggcc      4140
     acgttatagg gtatgggatg atacaaacgg atcccgaaaa agttactgcc attcgggagt      4200
     ttccagtgcc gcgatcggtg aagcaagggc gacgattttt gggaaccact ggatggtacc      4260
     ataaatttat taaaaactat gctggaattg cggccccaat atcagatacg ctaaagaaac      4320
     gtcgttcgtt tgtatggacc aacgaagcgc aaagggcgtt tgaaagttta aaagaccaaa      4380
     tgtgtggggc gccagtccta catagccccg actttaccat tccatttgcc attcattgcg      4440
     atgccagcca caccggagtt ggtggcgtgt taatgcaaac tgatagcgat ggtaatgata      4500
     tcccaatcgc attcatgtct cgcaagctga atcagtgtca gcgaaactat tcagtcacgg      4560
     agaaagagtg tttggcagcc ataatgtgtg tgaagaagtt tcaagcttat gtggaagggc      4620
     acgagttctc catccatacc gaccatgcat cattaaagtg gctaatgtca caatcggacc      4680
     taagttctag gttggcaaga tgggctctca aattgcaggg gttcaacttc aaaattttcc      4740
     accgcaaagg tagccaaaat gttgtcccag atgctctgtc gcgagtgcac accgaagatc      4800
     tatctgcatt cagctgcgag ggattggtag acctgcagtc ggattgcttc aagtcagcag      4860
     aatatttgga actgatacga aaaattgaat gcaatcagac acagatgcca gacattaaag      4920
     tgatcgataa tcatatatat cggcgagcag aacacgcggc tgctgatcag atcgctgacg      4980
     acctgtgttg gaagctatgg gttccaaagg agctggtgtc agatgtacta aaacagagtc      5040
     acgaacagtc gttagcagct catagcggca ttaataaaac gttggagaga gttcgacgat      5100
     attattattg gccaagttta gtaaccgatg tgagagcgtt cataaacagc tgttcggttt      5160
     gcaagtgcac caagtacccg aatcgttcgt tacgaccccc attagctcca gtgaaggaaa      5220
     ctcaacgagt ttttcagaag ttgtttgtgg atttcctggg tccgtatcca cgaagcaaat      5280
     ccggaaacat cggtatcttc gttgttttgg accatctttc aaaatatccg tttttaaaac      5340
     ccgtaaagat atttacagcg gaggcgataa ctcgatttat ggaagaggac ctattccatt      5400
     gcttcggggt acccgaagtg gttgtgtccg acaatggagt acaatttaag tcccatcact      5460
     tcaattctct gttgaaaaag tacaatgtgc agcattttta tacggctgtg tacgcacctc      5520
     aagccaatgc atcggaacgc gttaaccgtt ccgttattgc agccattaaa gcttacatca      5580
     agccagatca aactaattgg gatgagcagc ttagttctat tagttgtgcc ttacgatcta      5640
     gtctgcattc agccctaaac gacagcccct atcgggttgc atttggacag cacatgatca      5700
     ccaatggaga cacctatcag ctcttacgaa atttgcaggt tttagaagat cgtacagtga      5760
     gttttggtcg ggaagattcg tttgatgtga ttcgaaaaac agcccaacga acaatacaaa      5820
     aacaacacca acgaaacgaa cagcagtaca atcttcgaag tcgtgacgta gcgttcaagg      5880
     ttggccagga ggtctacaga cgcaactttc agcagagcaa tttcattaaa ggtttcagcg      5940
     caaaactagc tcctacgttt gtaaaagcta gaataaaacg caggcttggt cacagttatt      6000
     acgaattaga agatccccaa ggtagactta tcggaaaata ccacgctaaa gacataaagc      6060
     agtgaccatc ctaatacagg ttaacggttt tccgccaagc gtctatcacc ctttgatgtg      6120
     attaacacca aagtgtgatc ttggccgggg ggatt                                 6155
//
ID   Gypsy15-I_Dya repbase;    DNA;    INV; 5028 BP.
XX
AC   chr3L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy15_Dya;
KW   Gypsy15-LTR_Dya; Gypsy15-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5028
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1097-1097 (2009).
XX
DR   Genome; chr3L; Positions 9932021 9937048.
XX
CC   Positions [2231-2773] - Reverse transcriptase
CC   Positions [4109-4588] - Integrase core
CC   'TATT' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(53..1441,1445..4993)
FT                 /product="Gypsy15-I_Dya_1p"
FT                 /translation="MEYSVILKKSKTELIDILKANEVYFGEDATLVQLRNA
FT                 VKSVMAENKNKTIASNLVKTIEADEEPTNVTIPKSEIKTIGGGNENVHEDS
FT                 DEIKIYEKSITVTGDSGSMHREERDNHSVAPSGSVDDEIPGKDDEITTRNE
FT                 AIRKNEMLNEKKHDLSREGEYVQLEMQHLNNLENLYLARMRVVELEADFKL
FT                 MEGGARTVRNDVIGMKDIEALINCFSGDDGYPIRRWINDFEHIMNTYDVPD
FT                 QRRWIFARRMLSGSAKAQMINVNPLTWNTLCKELLAIFEQKVTAWDVIKQL
FT                 EARQKFPDESTLHYYIAMCGISKQATLADSDVIRAIVSGLQDKTGAATSLA
FT                 FCESLDELRKKITIYDKVKISDQRVAAANVDSSSNVKMIKSTNLQQRPTAV
FT                 RCYNCRKLGHIMSECRRPKRPEGACFNCYSQDHKYQDCPRKRGVTTVAAMQ
FT                 DGELSDTDDLAAVQSVKLFLYGEERCITVLSLFDTGSPVSFIQKSLVPNNV
FT                 KLKSQRSKYHGIGGQQILIFAKIECSVYFHKKAYKVSLLVVEDTLLPLPTL
FT                 LGRDSLKIMEVQLVHKKQINAEYNFSNKNINNDSNNKFSASLFTSKYITHY
FT                 NKKTNINNSSCLSKNKLNNQKLNNQKDINSYQQSNQLEVEQFFSNYAGYIE
FT                 EELKELISVGNGFGKDYEEKCSEIVKTHYLSKNLDYKKAPIYQMTIRVTDT
FT                 TPFHCSPRRLSYYEKEKVGEIIDDLLKKNVIRKSKSPYASPIVLIKKKSGE
FT                 LRMCVDYRGLNKRIVKDNFPLPLIEDCLEYLEGKICFSIMDFKSGFHQIGV
FT                 DSQSVPFTSFVTPHGQYEYLRMPFGLKNGSAIFQRFITEVLVDFIQNKQIV
FT                 VYMDDIVIATKTVKEHLEILKKLLDRISENNLEINLKKCEFLKPECEFLGY
FT                 KINRSGITPSEAHLDALKNFPIPQNLNTLHSCLGFFSYFRRFVLSFAKIAK
FT                 PLTDLLKQGGPFPLNEEQLGAFKSLKTVLSNPPVLAIFNPNRETELHTDAS
FT                 SHGFGAVLMQRQDDGKMHPVSFYSGKTNAAESRYHSFELETLAIINALRRF
FT                 RVYLEHRHFKIVTDCNSLVQTLSRKAINPKIARWSLELENYDYSIVHRPGV
FT                 NMPHVDALSRQVQVLDALRENSDNAIESLAKPLMSSEHSDNTVESIAKSIG
FT                 NNRNLESRVGNRRYMPHCESRDETQSNISEDHNFSIEDSKDSWGGVPNELE
FT                 FREKSIVESIKVVGVVGATPRDIDLILQTEQMRDPEIIKIRTAVEEGSCTS
FT                 FELVDGVIYKKNSDESLCLYAPSCMEEQIIRLSHEKLGHLAAEKCVKDLKR
FT                 NYWFPAMSSKVGNFIRNCLPCILHSVPKTIHNRTLHSIPKPCIPFHTIHID
FT                 HLGPLPSIHSKRKHLLVVIDSFTKFVKLFPVNSTSTREAKDSLSRYFDFYS
FT                 RPKRIISDRGSCFTSLEFSTFLQEREIEHIKVATGAPQANGQVERVNRILT
FT                 PMLGKLSEPIEQADWYKLLNKVEFAINNSIHSSTQESPSILLFGVSQKGPI
FT                 VDELSEYIEDKFNLEQKDLDSIRLKANRNIQHSQYKNEQYYAKKHKAPLEY
FT                 KVGDFVAIRNIDTTPGVNKKFAPKYRGPYKVNRVFENDRYEIVDVDDCQLT
FT                 QLPFKSILEPARLKHWKTVVNHTIALLL"
XX
SQ   Sequence 5028 BP; 1827 A; 778 C; 1026 G; 1397 T; 0 other;
     aaaatcaggt gtggggtata tcccaaaaca gttataataa agcaagacta cgatggaata        60
     tagtgttatt ctaaaaaaat caaaaactga gttaattgac attttaaaag caaacgaagt       120
     ttattttggc gaagacgcga ctttagttca actgcgcaac gccgttaaga gtgtaatggc       180
     tgagaataaa aataaaacca tagcgtcaaa cctagtgaaa accatagagg cagatgaaga       240
     accaactaat gtgacgattc ctaaaagtga aattaagacg attggcggtg gcaacgagaa       300
     tgtgcacgag gattcggatg aaattaaaat ttacgagaag tcaataactg taaccggtga       360
     cagtggcagc atgcacaggg aagaaagaga caaccatagt gtagcgccaa gcggcagcgt       420
     ggatgatgaa atacctggaa aagatgatga aataactacg agaaatgagg caataagaaa       480
     gaatgaaatg ctaaacgaga aaaagcatga tttatcaaga gagggtgaat atgtacagtt       540
     agagatgcag catttaaaca acttggaaaa cttgtaccta gctcgtatgc gtgttgttga       600
     gctggaagca gattttaagt taatggaagg aggagcaaga accgtgagaa atgacgtcat       660
     tgggatgaaa gacatagaag ccttgattaa ttgtttttcg ggagatgatg gctacccgat       720
     acggcgttgg ataaatgact ttgagcatat aatgaacacg tatgacgtac cagatcaacg       780
     ccgttggata tttgctaggc gtatgttaag cggatcagca aaagctcaaa tgatcaatgt       840
     gaacccttta acatggaata ccctatgcaa ggagctgctg gcgatttttg aacaaaaagt       900
     gactgcgtgg gacgtgatta aacagcttga agcgagacaa aaatttcctg atgaaagtac       960
     gttgcactat tacatcgcta tgtgtggcat ttcgaagcaa gcaacgctag cggattctga      1020
     tgtaattcgt gcaattgtga gtgggctcca agacaaaaca ggagctgcca cttctttagc      1080
     cttttgtgaa tcgttggatg aattgcgcaa gaagataact atatatgata aagtaaagat      1140
     atctgatcaa cgggtggctg ctgcaaacgt ggatagttcg agtaatgtaa aaatgattaa      1200
     atcaacaaac cttcagcaac gacctacagc tgtgcgttgt tacaattgcc gaaaattggg      1260
     gcatataatg agcgagtgca gacgcccaaa gagacctgaa ggtgcctgct tcaactgcta      1320
     cagccaggac cacaaatacc aggactgccc gaggaagagg ggcgtcacta ccgtagcagc      1380
     catgcaagat ggggaactat cggacactga tgacctggca gcggttcaat cggttaagtt      1440
     atgatttctt tatggtgaag agaggtgtat tactgtttta agtttatttg acacaggaag      1500
     tccagtaagc tttattcaaa aatctttagt tccaaataat gttaaattaa aatctcaaag      1560
     aagtaaatac catggaatag gtggacaaca aatattaatt tttgcaaaaa ttgaatgcag      1620
     tgtatatttt cataaaaaag cttataaagt tagtttatta gttgtagaag acacattatt      1680
     accattacct accttactag ggcgagattc acttaaaata atggaagtcc aattagtaca      1740
     taagaaacag ataaatgcgg aatataattt ttcaaataaa aatattaata acgacagtaa      1800
     taacaagttt tctgcatctc ttttcaccag taaatatata acccattaca ataagaaaac      1860
     taatataaat aattctagtt gtttaagtaa aaataagttg aataaccaaa aactaaataa      1920
     tcaaaaggat ataaatagtt accaacaaag taatcaatta gaagtagaac aattttttag      1980
     taactatgca ggatatattg aagaagagtt aaaggaacta attagtgtag gaaacggatt      2040
     cggaaaagat tatgaagaaa aatgtagtga aatagtaaaa actcattatt taagtaaaaa      2100
     tttagattat aaaaaagctc ctatatatca gatgactatt agagttacag atactacacc      2160
     ctttcattgt tcacctaggc gtttgtcata ctatgaaaaa gagaaagtag gtgaaataat      2220
     tgatgatctt cttaagaaaa atgttattag aaaaagtaaa tctccttatg catctcccat      2280
     agttttgatt aaaaagaaat ctggtgaact tagaatgtgc gtagattata gaggacttaa      2340
     taagcgaata gttaaagata atttcccatt accgttaatt gaagattgct tagagtactt      2400
     agaaggcaag atatgttttt caataatgga ttttaagagt ggcttccacc aaataggcgt      2460
     agattcacag agtgtaccgt ttacctcatt tgtaacaccc catgggcaat atgaatattt      2520
     aagaatgcca tttggcttaa aaaatggatc agctattttt caaagattta ttacagaagt      2580
     attagtggac tttattcaaa acaagcaaat agtagtgtat atggatgata tagtgatagc      2640
     taccaaaact gtaaaggaac atttagaaat cctaaagaaa ttattagatc gtattagtga      2700
     gaacaaccta gagattaacc taaaaaaatg tgaattttta aaacctgaat gtgagttcct      2760
     tggctataaa atcaaccgta gtggaattac acctagtgaa gcacacctag atgctttaaa      2820
     aaatttccct ataccgcaaa atttaaacac ccttcattcg tgcttaggat tcttctcata      2880
     ttttaggcgt tttgtattat cctttgcaaa aattgcaaaa cctttaacgg atttattaaa      2940
     acaaggaggc ccatttccac ttaatgaaga acaactagga gcttttaaat cgttgaaaac      3000
     cgtattatcg aatcctccag tattggctat ctttaaccct aatcgtgaga ctgaacttca      3060
     tacagatgct agctcgcatg gctttggagc cgtccttatg cagagacaag atgatggcaa      3120
     gatgcatcca gtatcgtttt attcaggtaa aactaatgca gctgagtcta ggtatcatag      3180
     ttttgaattg gaaaccctag cgattattaa tgcattacgt cgatttagag tttatttaga      3240
     gcataggcat tttaaaatag tgacagattg taattcttta gtgcagacac tgagtaggaa      3300
     agccataaac cctaagatag cgagatggtc attggaattg gagaattatg attattctat      3360
     agttcataga cctggtgtta atatgcctca tgttgatgcg ttgagtagac aagttcaagt      3420
     attagatgca cttagagaaa atagtgataa cgccatagag tccctagcga aacccctgat      3480
     gagtagtgaa catagtgata ataccgtaga gtccatagct aaatccatag ggaataatag      3540
     gaacttagag agtagagtag gaaataggag atacatgccg cattgtgaaa gtagagatga      3600
     gactcagtca aatatatcag aagaccataa ttttagcata gaggatagta aagacagctg      3660
     gggtggtgtc ccaaatgaat tggagtttag agaaaaatcc atagtagagt cgattaaagt      3720
     agtgggggta gtaggagcaa cacctaggga tattgacctt atattgcaaa ctgaacaaat      3780
     gcgtgaccct gaaataatta agataagaac agccgtggag gaaggtagtt gcacttcatt      3840
     tgaattagta gatggcgtta tttataaaaa gaatagtgac gaatccttat gtctgtatgc      3900
     tccgagttgc atggaagaac aaataattag gttatcacat gaaaaattag gccacctagc      3960
     tgctgaaaaa tgtgtaaagg atttaaagag aaactattgg ttcccagcta tgagtagtaa      4020
     agtaggaaat tttataagaa attgtttacc gtgtatattg cattcagtac cgaaaaccat      4080
     tcataatcgt acactccata gcattccaaa gccgtgtata cctttccata ctattcacat      4140
     agatcattta ggaccgttac caagcataca ttcaaaaaga aaacacctcc ttgttgtcat      4200
     agattcattt acgaaatttg ttaagctatt tccagtaaat agcactagta ctcgtgaagc      4260
     aaaagattca cttagtaggt attttgactt ctatagccgt ccaaaacgaa ttatttctga      4320
     caggggatct tgttttacct ccctagagtt ttcgaccttt cttcaagaac gtgaaataga      4380
     gcatatcaag gtggctacag gcgcacctca agccaatggg caagtagaga gagtgaacag      4440
     aatcttaaca cctatgttag gtaaattatc agagccaata gagcaggcgg attggtataa      4500
     gttattaaat aaagttgagt ttgccattaa taattccatt catagtagta ctcaagaatc      4560
     acctagtatt ctattatttg gtgttagtca aaaaggccct atagttgatg aattatcaga      4620
     atacattgag gacaagttta atttagagca aaaagactta gatagtatcc gtttaaaggc      4680
     taataggaat atacagcact cacaatataa gaatgagcaa tattatgcaa agaaacataa      4740
     agcccctctg gaatataaag tcggagattt tgtagctata cgaaatattg atacaacacc      4800
     tggagttaat aagaaattcg cacccaagta tcgcggccct tataaagtaa atagagtatt      4860
     tgaaaatgac cgttatgaaa ttgttgatgt agatgattgt caattaaccc aattaccatt      4920
     taagagtata ttagaaccag cgagattgaa acattggaaa accgttgtaa accatactat      4980
     agcattacta ttgtagatcg aggtcgatca taagtcaggt aggccgaa                   5028
//
ID   GYPSY15-LTR_AG repbase;    DNA;    INV; 794 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY15-LTR_AG is an LTR of retrotransposon GYPSY15_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY15_AG; GYPSY15-I_AG; GYPSY15-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-794
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY15_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 172-172 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY15-LTR_AG is a long terminal repeat of GYPSY15_AG
CC   (its internal portion is deposited as GYPSY15-I_AG).
XX
SQ   Sequence 794 BP; 287 A; 201 C; 125 G; 181 T; 0 other;
     tgtagcatat ctgctataca gaacatattg taatacacac tatcagccat agacacatag        60
     taacacactt tggaaagcca aatcacacca ttgtaacaca ttcattataa cacactcagt       120
     aaatcagatc ataccataca cacccggaag agctcaggcc acaccgttca tataaaaaca       180
     attgtgacac acttaacaga accaaccgaa acgtacaaca taagcaggaa cagtttatgc       240
     tttataaccc aaagcaggaa cggtatatgc attaaaccca aaacaggaac ttagtgacaa       300
     gaaccatcgt tcttgtcaac aaaagacaaa cgtaactagc ttagtgaaaa caataacttt       360
     tcaacataca acccggaacc aaatgtgaga aacccttaac ttcttttgag tataaataaa       420
     accaactccg atcatggcag gtcagattcg ttcggactgt caggatagga ctatgcccat       480
     cctacatcta tcgagttctc atttaaagag tttagatatg tccccctgcc caaggtaagg       540
     cctctaaact ccaacgtttc cagtaaggga aacctcctaa aggtttctat gatcgcctgg       600
     acgatcaagt gtcgaaagtc cgcttcgaaa cagtatccac ctcagttcta cttaattcgg       660
     caaacgatga cgaaggccac cctgaccaac gcgagttcaa agttactaca tggcaaccgt       720
     cccaaaatcg aacatactgt gactatctca aaacatacca catggcgacc gtaacagtca       780
     tcaaacatat taca                                                         794
//
ID   Gypsy15-LTR_Dpse repbase;    DNA;    INV; 2568 BP.
XX
AC   Unknown_group_825;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy15-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2568
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1098-1098 (2009).
XX
DR   Genome; Unknown_group_825; Positions   14877   17444.
XX
SQ   Sequence 2568 BP; 732 A; 571 C; 555 G; 710 T; 0 other;
     tgtagtggtt gcttgtcggg cgtataggaa agcctatcac ttttcttcgc ctgaaagtag        60
     gccgatgtta tttgtacaat ttatatattt atatttatat atattatatt agttatataa       120
     ttagatatca cacctcaccg agatacttat taattattaa gtttatttcc gatagttagt       180
     gtatagttag gttggtttaa tttcattttg gtggtgttac atgttgaatg ttccttgtca       240
     tgtggggcta gcgccaccta ggggtgacat taagaatagg cgaaaaacga aaaaaaaaat       300
     ctcaccacca ttcccataac cgttcaaggt gaatggcgaa ggatcgtgca aaggcagatc       360
     cggagaacca aatttttgtt ggtcggtaga tccgcccaaa tctttctttc tcctcgtggc       420
     cgtacaagaa ttcagttgcg cggtgagaaa aaaaataata aaaataaaat taaaccgccg       480
     tgtgtgaaac aaaagtgcac cagatcgaaa aaaaaagaac ccaagaaaac agattggggt       540
     ccaaacgaaa acgtgagtac cggccttcga tagtgctagg agcctcgaag ttagattttc       600
     cgaattattc tgtattttcc gcttggaggt cagcagcccc aacacaaaaa cacctggaga       660
     aagagggaat tagcacctca accccatccc cctattttcg cagtgccagt tccaacaggg       720
     taaatatgtg cattaagaac tgttagaaaa agtagcctga tcagtatttt caaattccac       780
     attagaatcg gcacttagtt tgggaagtat tccaaagctg cagcccgagc tttaagcccc       840
     cgcactacga accagctgat ccaccaagtc gcgggcagtg aactttggct gcgcgaggcg       900
     aagacagccg tctgaccggg cttagtgcgg cgaattggcg taaccgtttc gcgttcaaaa       960
     ccgggccaag aagcgcggta acccggaact tgcagtcagc gtcggacgga agcagcggaa      1020
     attttcctac cgggctgaaa aaagatagtg cgccacgtgt ggacataacc tcccggcgac      1080
     cctgagtggt atcgcctctc ttgttcttct cgtgattcgg gcctagctgt tcaacgtgta      1140
     gttaaagtgc agctgaggcc agtgtttgtc ataggtgctc gttagggtca ttatgtaggc      1200
     tgaatgtacc caaaaacaaa aaagtaaaga gatgtgctca catccatatg tacacacagc      1260
     ccattgaaag ccactgaggc cagtaagatc ccccccgtga ctcgcattcc cttgaccctc      1320
     gcagtccggt gatatgtccg tgtttgtgta gttggatata cttagtgata attgtagaca      1380
     gaaaagaaaa acagaaaaga aaaaccaacc acacctgaaa agtttgaaaa tgcattttgt      1440
     acaagtttaa aagattgagc ttaaaagcgt ccgctcggcc gggtcacatc agcgagctta      1500
     tgccatgcag cacgtgctgt tcgattttgt ttttggtttg caggtaaaag cgtaatgcac      1560
     ccacacacag cgacacgccc agctacgaaa gatctttcgc cgcgggaaca caaacaacaa      1620
     ctgagtgagc tttatactat accaacaaca ctacattgct ttgcctccca aaattccgcg      1680
     agcgtggcaa aagcttcgtt tttttttgct agagctgttt gtcggtcgtt gacctcacac      1740
     ttttaaacta gtcacagctg attggccttc tgcctttaca gtaagattgg taaaacgaat      1800
     agtatgtcca actactccct gaagccgatg tgctgggaca tgtgtaccta tatggcgctg      1860
     aattattatc tttctattta aggaaaaatc attagtttat atcgcaatat aaaatatcgt      1920
     atatgcactt ataactattt atacttatcg tatttattaa tctaaatatt ccctagaatt      1980
     aatagctata tctcttgtga cgcttttcgt tcctactttt gtccatttag ccttgtcttg      2040
     gagttctctg ttagtgtttt ttttgtaaca tgagggtatc tgaatatagt ttctaataaa      2100
     atgattgtta agatgaatat gtgctagacg ttaccgtatt tgggggaacc atgccgctcg      2160
     ggagcgaaat aggatgacca ataccgggca ctccagggat cctgatatta ttattggcct      2220
     tttcaggatc atggtagggt gggcgtggca cgactccgtg ccagcaaaac agagatgtcc      2280
     gacgcggtgg tagatcctta ttccttcact atactatctt tgcccaaata tacttaccga      2340
     acccctaatg atcctttcct tgtctgtccc cctcccattc ccaaaaagag tacgcgaatt      2400
     ttaataaaat aataccagca ggaacgaagc aacctaactg gagggttacc ccaaaggacc      2460
     catccctatt tccgaccaga gaccagccgt ggaagcgagc gcgtactcct tctcagttag      2520
     ccgaccacca gcttcattgt gcgaagattc tcttcgtgac tcgttaca                   2568
//
ID   Gypsy15-LTR_Dya repbase;    DNA;    INV; 164 BP.
XX
AC   chr3L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy15_Dya;
KW   Gypsy15-I_Dya; Gypsy15-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-164
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1099-1099 (2009).
XX
DR   Genome; chr3L; Positions 9931857 9932020.
XX
SQ   Sequence 164 BP; 75 A; 12 C; 29 G; 48 T; 0 other;
     tgtaaactgt atataattgt aaatactaaa taactaaata tcgatagaat taattgaata        60
     gatttaagaa tgaacgatag tatcatcgat atatcgaatg tagagaaggg atcgagaagt       120
     tgaaggagaa acatcgttaa taaagaatat ataaaattgt taca                        164
//
ID   Gypsy15-NVi_I repbase;    DNA;    INV; 7609 BP.
XX
AC   .
XX
DT   02-MAR-2008 (Rel. 13.03, Created)
DT   03-MAR-2008 (Rel. 13.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; Gypsy15-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7609
RA   Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 8(3), 247-247 (2008).
XX
DR   [1] (Consensus)
XX
CC
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           420..2807
FT                 /product="Gypsy15-NVi_I_1p"
FT                 /translation="MSEYSTSTMSLTGSYIDLSRSHVAIQDHVRSMDTNTL
FT                 GQALDFLGLQDRGADEDRMRRLFRCLAGDYAPEDFRPSLTLLNSEELFRSR
FT                 ATRRASYITNYIPQEVSGIFEEEERNANQISLRILHQRNTIRNPDVVIQEQ
FT                 QAYQPLDCSNPSEIENEFSWLNPVTIGFGQPLHREQVRQPLATIFGGNPCD
FT                 NTSTVGNDVVEESLENPDQIRIDANPPELADEPERTSNVDFLMYLASDGCT
FT                 YNLPTRVVDDLLKKDDEIAQYKKIQDEACEYIRKLRMANTAQREPPACSTR
FT                 LETSEFTRSKEDAPPPVETRNKHVDFNDTYTTRYFEPTTKNFSTSDLEASN
FT                 MYQQPQRRSNQQSTPHNHTPGQLRPIQPPYTLPQSSYERNIFSQNRMAQQA
FT                 QIPTCHQSQCYQTCDQHRINQPQNTGDSQQRSGNAWREGDQPIRPNRLVSE
FT                 RGPSNLQTNTSGYYDSNLQNTLRENSADINDKIRKWNVKFGGTSTEDVEEF
FT                 IRLVEGCRKLARPRISEEELLDALSHTTSLLSGRALKWARVERPKWHTWED
FT                 FCEEARATYGMTDEERSQLIVEASSRTQGPQEDVNDYYVSMVMIFNRMPEA
FT                 LPIRQRLDILYQNMNPELKLIFGRMEFETLNEFKSKAVSAEKRTRAKSRYK
FT                 PPPTPDKSMLPGAAYNPQEKAKNKNQPAIAAICPTDAEEPPLWFKTWSSTN
FT                 YPSNAKKDNNGRQNQKGSNKPTQGKKKTSAANQQAKPTASTEDKNKSNSKE
FT                 GDKSSGKPTNPANKDKKELVCWNCKLPGYTKKTCPDCAGKAKGEQ"
FT   CDS           2771..5416
FT                 /product="Gypsy15-NVi_I_2p"
FT                 /translation="MSRLCGKSKRGTVSEIRTDPEVNSGISASQSTEQLNP
FT                 TAIAHCAATSSNAVLSDQRWWLQVQVGEFRVRALYDPGATQTCIGATSVQL
FT                 ASACNAEIKPCDGIVACMADGKTSMVTGTVDLPFTIGGQTRTLTTLVVPDL
FT                 REGCNLGADFVLQFDARLNPRERTLTVENSTEVINACEAVTDGTTRPVLAS
FT                 IGLQDLHEGQKRMLEELLDRLIPKDDGPLGFTNLVEFDLEVETCRPIKQKF
FT                 YPVSKKLEEMLFSQVRELLAADIIEPLFSDWASPVVMVKKGNSGKRRLCID
FT                 FRKLNKVSKVSAYPLPFMDTILSKLQCARYISTTDLSNAYHQIKIKKESRP
FT                 YTAFKVPGMGLFQWKRLPFGLAGAPACFQRMIDSLITPDLEPHCYSYLDDI
FT                 IVCTETFEDHLKVLEIVLTKLAKARLTINREKSHFCQSEVRYLGVLVNRDG
FT                 FRPDPDKIAPIIEYPTPKTLKQLRRFLGMSSWYRKFLKDFATIVEPINRLL
FT                 KKGTSYVWGKDQERAFEQTKMLIASAPVLHRPDFNKTFCLQCDASGTGLGA
FT                 VLTQVIEGEERVLSFASRTMTPAERNYSASERECLAVLWAIQKFRPYVEGY
FT                 HFLVITDHSSLKWLSNLRNPTGRLAIWALELQEYDYTIEHRKGSMNVVPDA
FT                 LSRLYEGDDAEETRPIIASITPEDETTDKWYTELKKEVTDNPLEFPGWKLL
FT                 GGKLYTYRPDAFVDDVFEDENAWKLVLPKEKRAQVLNECHDEATSGHFGRK
FT                 KTQERVALSYYWPSMKKDVTNYVRSCLICQQCKVEQRKPAGQMGSRNFSRP
FT                 WETVAGDVMGPLPKSTHGYEYLLVFQDMFTRWVECIPIRKANAQTIIKNLN
FT                 ERVFYGSERQKSSFPTTEQSSEIRLWINS"
XX
SQ   Sequence 7609 BP; 2385 A; 1687 C; 1817 G; 1719 T; 1 other;
     gccgctccgg cgtataattg ctttttcgaa ttcgcgtaga aaataaattt tttgcatgat        60
     agagggagtt agtaacattt aaattcacaa ataatttatt aaagtggaat tgtttttttt       120
     ttcttacaaa ttagtaagtt tttttctctt tctcagattt taaaacttgt agcacaaaac       180
     gtgcgtgatt acttgctctg tcaggcaatt tatcgcggtt caaaaacaaa tmattgttac       240
     cgttatacaa atttaattga gtgattaaaa ttaaatcaca cgtattaatc gaaaaagcaa       300
     acgtgtgttc cagtgtcgac aactaggtat taaattcact tcgagagtaa cttggattgt       360
     tgaatcctga gttttgtttt tggttgtgct gaatttgact cggctctgct tctgattaaa       420
     tgtcagaata ctcaacgagc acaatgtctt taactggctc gtacatagac ttaagcagat       480
     cgcatgtagc gatacaagac cacgtaagat cgatggacac gaatacgtta ggtcaagcgt       540
     tagatttctt aggtttgcag gatagggggg ctgatgaaga cagaatgcgt cgattgttta       600
     ggtgcctagc aggtgactac gcgccagaag acttccgtcc gtcgctaacc ctgttaaatt       660
     cggaggagtt atttaggtcg cgggcgacac gacgcgcgtc gtacataaca aattatatcc       720
     ctcaagaagt cagcggcata tttgaagaag aagagcggaa cgcgaatcaa ataagtctaa       780
     gaattttgca ccaaagaaat acaatccgta atcctgacgt tgtcattcag gagcaacagg       840
     cgtatcagcc attggattgc agcaatccaa gcgaaatcga aaacgaattt agctggttga       900
     acccagtaac aatagggttc ggtcaaccgt tgcacagaga acaggttcga cagccgttgg       960
     ctacaatttt tggtggtaat ccgtgcgata atactagcac ggtagggaat gacgttgttg      1020
     aggaaagcct cgaaaatcca gatcaaataa gaatagacgc gaatccccca gaattagcgg      1080
     atgaaccaga gagaacatcg aacgtcgatt tccttatgta tttagccagc gacggctgca      1140
     cgtataattt accgacaaga gtcgtcgacg acctattaaa gaaagacgac gaaatcgcac      1200
     agtataagaa aatacaagat gaagcgtgcg aatatataag gaaattacgc atggctaaca      1260
     ccgctcagag agaacctccg gcgtgcagta ctcgattaga aacatcagaa tttacacggt      1320
     caaaagaaga tgcaccacca ccagtggaga ccaggaataa acatgtagat tttaatgata      1380
     cctacactac acggtatttt gaaccaacga ccaagaattt ctcaacttcg gatttagaag      1440
     ctagcaacat gtaccagcaa cctcagcgaa ggtcaaatca acagtcgaca ccacacaacc      1500
     atacgcctgg ccaactacgg ccgattcagc ctccgtatac gttaccacag tcgagttacg      1560
     agaggaatat cttttcacag aacagaatgg cacaacaggc acaaataccg acatgtcatc      1620
     aaagccagtg ttaccagacg tgcgatcagc atagaataaa ccaaccacaa aatactggtg      1680
     attcccagca aaggagtggg aatgcttgga gagaggggga ccagccaata cgtccgaatc      1740
     gcctggtttc agaacgaggg ccaagcaacc tacagactaa tacgtctgga tattatgact      1800
     ctaacctcca aaatacgttg agagaaaatt ccgccgatat taacgacaaa atacggaaat      1860
     ggaatgtaaa attcggaggc acgtcaacag aagatgtaga agagtttatc agattagtgg      1920
     aaggttgcag gaaactagct cgtccaagga tttcagagga agaattgtta gacgcgctat      1980
     cacacaccac ttcgctacta tctggaagag cactgaaatg ggctcgagtt gaacgtccga      2040
     aatggcacac gtgggaagat ttctgcgagg aggccagagc aacgtacgga atgacagatg      2100
     aagagcgttc acaattaata gtggaagcta gctcacgtac gcaaggacca caagaagatg      2160
     taaacgatta ctacgttagt atggtcatga tattcaaccg tatgcctgaa gctctgccaa      2220
     ttagacagcg gctggatatt ctataccaga atatgaatcc agagttaaag cttatttttg      2280
     gtcgaatgga atttgagact ctgaacgagt tcaagagtaa ggctgtgagc gctgaaaaac      2340
     ggacgagggc taagtcacgc tataagccac cccctactcc agataagtct atgctgccag      2400
     gagcggctta caatccacag gagaaggcaa agaataaaaa tcagccggcg atagcagcta      2460
     tctgtccaac ggatgcagag gaaccacctc tttggttcaa gacttggtct agtactaatt      2520
     acccctcaaa tgccaagaaa gacaacaacg gccgtcagaa ccaaaaaggg tcgaataagc      2580
     ctacccaggg taagaagaaa acctctgcgg caaatcagca ggctaagccc accgcgtcga      2640
     cagaagataa aaataaatct aactccaagg aaggtgataa gtcgtcggga aaaccaacca      2700
     atccagcaaa taaagataaa aaagaactag tttgttggaa ttgtaaatta cctggctaca      2760
     cgaagaagac atgtcccgac tgtgcgggaa aagcaaaagg ggaacagtaa gcgagatccg      2820
     tactgacccc gaggttaatt cagggatctc ggcatcacag tcgactgaac aactaaatcc      2880
     gactgcaata gcacactgtg cagcgaccag tagtaacgct gttttatccg accagcgctg      2940
     gtggctgcag gtgcaggtag gtgaattcag ggtcagggcc ctttacgacc caggagccac      3000
     tcaaacttgc atcggggcta cgtccgtaca actagccagt gcatgtaacg cagaaataaa      3060
     accatgtgac ggaatagtcg cctgcatggc tgacggtaaa acctcaatgg tgactggaac      3120
     agtcgacttg cccttcacga tcggtggaca aaccaggacg cttactacgc tagtagtacc      3180
     tgacttacgt gaaggatgca atttaggcgc tgacttcgtt ctacaattcg acgccaggct      3240
     taaccctcgt gaacgaacgt taacggttga aaattcaacc gaagtcataa acgcctgtga      3300
     agcggtaaca gacggaacca ctcgtccggt cttagcttcg attggcctgc aggatttgca      3360
     tgaaggccag aaacggatgt tagaagaatt actcgatcgg ttaattccta aagatgatgg      3420
     gccgctcggc tttacgaact tggtggagtt cgatctagag gtagagacat gtcgtccgat      3480
     caagcagaaa ttctatccgg tttcgaagaa actcgaagaa atgctctttt ctcaagtaag      3540
     agagttacta gcagcagata tcatcgagcc tttgttcagc gactgggcta gtcccgtcgt      3600
     gatggtgaaa aaggggaata gtggaaagcg tcgattgtgc atcgacttcc gcaaattaaa      3660
     taaagtttcc aaagtaagcg cttaccccct acctttcatg gatactatct tgagtaagct      3720
     tcaatgtgct cgttacatat ctacgacaga tttgagcaac gcttaccatc agataaaaat      3780
     aaaaaaggaa agtcgaccgt atacagcatt caaggtcccg ggaatggggt tgttccaatg      3840
     gaaacgtctc ccgttcggct tagctggtgc tcctgcctgc ttccagcgta tgatcgattc      3900
     cttgattacg cccgatctcg aaccacactg ttacagctat ttggacgata ttatcgtctg      3960
     taccgaaacg ttcgaagacc atttaaaagt cttagagatc gtgctgacga agctagccaa      4020
     agcacgattg actataaatc gcgagaaaag tcatttttgt caatcggaag tgcggtatct      4080
     tggcgtgctc gtcaacaggg acggttttcg tccggatccg gataaaatcg ctccgattat      4140
     agagtacccg actccgaaga cattaaaaca actgcgcagg tttttgggaa tgtcgtcgtg      4200
     gtacaggaag ttcctcaaag attttgcaac gatagtggaa cctataaatc gactgcttaa      4260
     gaaaggaaca agctacgttt gggggaagga ccaagaacgc gcgttcgagc aaactaaaat      4320
     gctgatagca tccgctccgg ttctccaccg accagacttt aataaaacct tctgtctaca      4380
     atgcgacgct tctggcacag gccttggtgc tgttttaacg caggtgatag aaggggaaga      4440
     acgtgtgtta tcgttcgcga gtcgcactat gactccggcg gaacggaatt actcagcgag      4500
     cgagcgtgaa tgtttagcgg ttctctgggc gatacaaaaa ttccgtccgt acgttgaagg      4560
     ttaccatttt ctggtgatta ccgatcatag cagtctcaag tggctaagta atttacgaaa      4620
     tccaactgga cgtttagcca tatgggcact tgagttgcag gaatatgatt acacgatcga      4680
     acatcgcaaa ggctcaatga atgtggttcc cgatgcgctg tcgagacttt acgaaggaga      4740
     cgacgcagaa gagacacgtc cgattattgc gagtattaca ccagaggacg aaacaactga      4800
     caaatggtac accgaattaa agaaggaagt aactgataac ccgctagaat ttcctggctg      4860
     gaagttatta ggtggaaaat tatataccta ccggcctgac gcattcgtcg atgatgtttt      4920
     cgaagatgag aatgcttgga aattagtact tccgaaagag aaaagagctc aagttttgaa      4980
     cgagtgtcat gacgaagcga cgtcaggtca tttcggccgc aagaaaacgc aagaaagagt      5040
     cgccctgtca tactattggc catcgatgaa aaaagatgtg acaaattacg tccgaagctg      5100
     cttgatctgt caacaatgca aagttgaaca aagaaaacca gctggtcaga tgggcagtcg      5160
     caacttctcg cgtccatggg aaacagttgc tggtgacgta atgggtccgc taccaaagtc      5220
     tactcacggt tatgaatatt tactggtgtt tcaagacatg tttaccaggt gggtagaatg      5280
     catacctata cgaaaggcca acgctcagac catcattaaa aacttgaatg aacgggtttt      5340
     ctacggttcg gaacgccaaa agtcttcttt tccgacaacg gaacagagtt ccgaaataag      5400
     gctatggata aattcctaga ggaacgggga gtacaccata cgtacgcacc accgtatcac      5460
     cctcagccta acaccgtaga acgtgcgaac gctgatccgc gaatatatcg agggtcatca      5520
     taaaaactgg gacgaacata tagcagagtt cgcattcagt atgaacacgg ctacacaaga      5580
     ctcactccag acttctccgg cgatgttgaa ttttggtaga cagccgagcc accccaaatc      5640
     tctgcttcga caagaggaga ttgaagctat agccaacgaa gatcagatcg ctatatctga      5700
     atggaaggct aggatggaga agctgagaga actccaagaa gcggctaacg ataacgctca      5760
     agaagcgcaa gcgcgccagg ccaaatattt caacagccgg caccgaaacg tggagtactc      5820
     agtaggcgac gaagtctgga agaagaatag agtactgtca tcagcagcgg agggagttca      5880
     gctaaattag ctccaccgtt tatcggcccc ttcaaaatca gccgtatact gagcccaggt      5940
     atttacgaac tagttgaccg aaacggaacg gttgatggac cgactgctgt cgaatatttg      6000
     aaaaagtatc acaatagaga agaaaacgac ggtgagccta tcgcagcagc aggcggctgt      6060
     gaagttactg atcaagtaga cgacatcagg actacgtccg tcaacaatga agaaactgaa      6120
     gaagcgaaag aatctaacgc aagtagcgag cgaccgaaaa agcgaggtag gccgaggaaa      6180
     acgcggttac ttgtaaaacg caaaacacta ccggcgaaga ttgtaaaccc gacaaacacc      6240
     gtaagcgtcg aggtagacaa agcgaaacgc ggaagaccga aaggttcgaa aaataaaccg      6300
     cgtgacgttc cgaatagttt gtctcctagg aaaacgcgag cgcaaaaggc ggcgggtacg      6360
     gttgacaatt aaaatcatgc gattagggag cttcattctt ctgtataccg tcccattctc      6420
     cactcataat tcccttcttc ccacatagac ggctgaacgc aagatggacg acatcaggga      6480
     gttagcagag gagattgtgc aacaaatcgt cgaagagtcg atgagtcaca cggtcgacga      6540
     cacgccagca gtaccggcca acgtcccatc cggattagag gtgggaagcg aactgctcaa      6600
     ccggtcgatc tttgctatcc cggaatcacc gaccgagatc gaactgagga agcaagctct      6660
     gctgaaagaa ctgcaggtga tagaagacgc acagttcgct caggctctag tcagaagaca      6720
     gcaagcgaga aaccgagcga cgcagctcag aaccgagctg atcgctgcgc tggaagaagc      6780
     catcgctatt gggtcggaaa ttaaggaaaa gtatggccac cggccggatt tacctaaggg      6840
     agacacaacc ctagtagaaa ccgtggcatt tctaaaggcc aaatgcaaag cgaagccgca      6900
     accattgcca gcgccaccgg ttgtcccgaa gacggctcca acagccgtaa ggccagattc      6960
     gaccagccat cagcccgaca cgacgtcgaa aaccacggcc gctccagcag caacagccgt      7020
     aaagaaacgg ccgactctaa ccaacgaaca gttgaacaaa gagttcgacc gtaaccgtga      7080
     actgaagcgt cgagcgaaaa ataggctgcc gacttacacc gaacctggac cgcaatgccc      7140
     catttgcgga taccgaggta ttgctcgatt ggacgagtgc cccaatttca acgtccatgg      7200
     aatggactta acgtacggcg acaagtacaa gaagaagtag aagaagaagc tcaggctaac      7260
     ggccgaacca cttcatttcc tcctgtacct tacctcaatc ccgtgcaatg aagcattttg      7320
     ttttttctta tttctcttct ttctctctta atgttttttt ttagaggcaa aagactgccg      7380
     tactggccaa cggccgtatg taaaaagaga ggcgagagac taaaaatgaa ctattttttt      7440
     ttttatttac ttctttcatt atatgtatta tctaattaat gatgataata aaaagtcaag      7500
     ttttccttgt aaaaattgat atttattaca agttcttatt acccagttat acatgactga      7560
     gtgcgagctg gtacacctgg cagggtacac agcgtcaggg ggagggtgt                  7609
//
ID   Gypsy15-NVi_LTR repbase;    DNA;    INV; 1404 BP.
XX
AC   .
XX
DT   02-MAR-2008 (Rel. 13.03, Created)
DT   31-MAR-2008 (Rel. 13.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy15-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1404
RA   Jurka J.;
RT   "LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 8(3), 248-248 (2008).
XX
DR   [1] (Consensus)
XX
CC
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
SQ   Sequence 1404 BP; 370 A; 339 C; 349 G; 344 T; 2 other;
     tgtgacggcc gagtgcacgt caagtgtcta accgtcaatc atattataat tgtaataaga        60
     yttatgtttc agcaagctgc caacgagcgc cgaaacgagc gagaacgaga aacgaggcaa       120
     gatagagaca gagagagtga gagcataggt agcgcggttg ccgcctggcc gcacagcgtt       180
     ggcgagatat gacaacgatg tgccgacggc cgggagagct accgcccgcg tgccgcgcgc       240
     tggcgactag agttagtctc gctgcgctat ccacacgagt agctcgcgct rctatatacg       300
     cgggtttgcc cttgtgagct cctgcgagca tctcgagagc gaacgatatt cgtccgtgcg       360
     ttaccgacga gtcgctgcga cgcccgtccg aactgttgca catctccacg tccgagactg       420
     gaccacgtcc gttgcgttca agtactactg ccactgaccg agtctgtaag tacctgcact       480
     ctcactctct cacgtatcga cagggtaata tctctcgtct ctctttatcg ttcgtcgaag       540
     tgtgcggcgt ttgcacctcc gtgtatagca ttacaattga atatacattt ccttatctaa       600
     tacttctcgt gtgttatttc ctacgacccg acctacgccg cctccgcggg ctcgtgtaaa       660
     aacacgtgca tgatctgagt cggccgagcc gtgccttctg cacgcccgac gttaataatt       720
     acaataaaca gggcccttct ggccctggtt ataacacggc agaaaagata ttaaccgagt       780
     gttataaatg gcgccccaaa acgtgtgtct aggttaagct aaataactcg cgagtgtacg       840
     aaaaattgtg tagcagctac tcgtgctaca gtgtcgacac attgtaagcg tacagtgaga       900
     ctcggaaaaa ccgaccgcaa cggtaaaaag caatagacag tgtcgaataa atcgcacagt       960
     ttagcttcgt agcggcaggc atcagccttc gaaattcgaa acgaccaacg gccgagcggc      1020
     cagcgacagc gagcgtacat tgtttacatc gcgcgccgcg aaccgagagc tcggatatac      1080
     aaacagtgtc gtccgttagg cagcgaattt tcggctgagt gcgagtgaga cggaggaact      1140
     acagtcggta taggatattc agattattgt atgaattttc gagaattctt tttgcacttt      1200
     gatgcaattc ttgaacccga ctacagttta aaccgtaatc tcgcagtcct caataaattg      1260
     ttgtgtttat taataacgtg taaggcataa atcgcgataa taatttggaa tatttcgtga      1320
     gattttagcc tggttttgtg agaaatgtag ctgtgtagtt gagtacaggg acgtacaagt      1380
     aaacatatat atagtcaaca caca                                             1404
//
ID   GYPSY16-I_AG repbase;    DNA;    INV; 5891 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY16-I_AG is an internal portion of retrotransposon GYPSY16_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY16-I_AG; GYPSY16-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY16_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5891
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY16_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 173-173 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY16_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY13_AG,
CC   GYPSY14_AG, GYPSY15_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY16-I_AG consensus was reconstructed after multiple
CC   alignment of 13 copies.
CC   The consensus encodes the 397-aa GYPSY16_AG1p gag-like protein
CC   (pos. 967-2157) and the 1231-aa GYPSY16_AG2p (pos. 2133-5825).
CC   The sequence of the LTRs flanking GYPSY16-I_AG is deposited as
CC   GYPSY16-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           967..2157
FT                 /product="GYPSY16_AG1p"
FT                 /translation="LSLLFNGSNLMSKLKDKLFQLRLIQHKLEYLPKNFRV
FT                 CTVSKYKILARELLTSIQSDLIELGEAISEEYLNKINSETNECFSAIEFRI
FT                 NNYQMTNDSQTEKMAHFDIKIATSLVQTYDGSKENLDIFIDSVNLLKEITP
FT                 NDQKVMLVKFIKTRITGKARIGLPRDLDNIDEILENIKVRCEEKTNPEIVI
FT                 NQLKTIQARQTTKICEEVEILTSKLKGLYLEQKIPEEVANKMAVKVGVDTL
FT                 KEKISNSETKILLKVGHYPTITAATQKVLENEIENNNSNQVLAFNRNQNFS
FT                 TNNFKRFPNSKTNNYNRYNSNPNFQNRTKRRYYESPNSNRTNPNTYTPNRN
FT                 RDRHFYRNPRQYNQFGRQNTQPNNFSNQQARRIFTTEAEEEEEQNNFLGQA
FT                 RQE"
FT   CDS           2133..5825
FT                 /product="GYPSY16_AG2p"
FT                 /translation="FFRPSPAGIEQLPVMTLNLSANNSTTIKVEKAANKYS
FT                 SLFIDTGAAVSLFKIGKIRSQHEIDSNNKVRLTGITNNSLITYGTISSNLI
FT                 FNNATVSHKFHLIPDIIEIEADGILGRDFFTKYKCKIDYEYYLLNFDINGI
FT                 SISHPIEDNSLLIPARSEIIHKIDLKNLKKDSVVHAQEITTGIFCANTIVS
FT                 KNNPCIKFINTTEKDTIINTKFFKPTIEPINNFEIYKVAETKTNMHRVKEI
FT                 LSKINLKNYPDIISQEISKLVNKFSDLFCLNEDPITTNNFYKQTITPKDNI
FT                 PTYIPNYKQIHSQSKEIDQQVNKMLENNIIENSVSPYNSPILLVPKKTGND
FT                 KKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGNAKYFSTLDLMSGFHQI
FT                 PLEKESRKYTAFSTPKGHYQFTRLPFGLNISPNSFQRMMAIAMAGLTPEIA
FT                 FIYIDDIIVIGSSMKNHIENLTQVFNRLRYYNLKLNPEKCKFFKSDVTYLG
FT                 HKITDQGIYPDETKFETIRKFPIPTNADEVRRFVAFCNYYRKFIQNFAKIA
FT                 KPLNDLLKKGTLFEWKKEQQTAFDSLKEHLLSPTILKYPDFSKDFIITTDA
FT                 SNFACGAVLSQITNGQDFPIAFASKTFTKGEKNKSIIEKELVAIHWAVKHF
FT                 KPYVYGRKFTIRTDHRPLVYLFGMKNPTSKLTRIRLDLEEFDFTIQFVAGK
FT                 SNVAADALSRIVYNSDELKELIPKTKEEDIKSIKNNSIMVVNTRAMVKAQK
FT                 KVKDTPTAGRNKEEVTNQVFWKTDRPSEVNKILKIKSEVKRNGIEIKVCSH
FT                 NYNKQLGKRVIPLNNSKGQNGSQEIELALLDICQIAKKFNRDKLAISVEDK
FT                 LFEYYSQLTIKEIADTAIFGYEIILFDPPKWITSEKEKLKIMEEYHAIPTG
FT                 GHIGQYRLYLKIREKFKWNNMKQDIISYVQKCEICKVSKVNKHTKEKSIIT
FT                 STPAKPFTIISIDTVGPLPKTINNNRYAITIQCDLSKYIVIIPIKNKEANT
FT                 IAKALVEHFILTYGSFLELRSDQGLEYNNEVLSKIAQILKIKQTFSTPYHP
FT                 QTIGALERNHRSLNEYLRAFTNEHHDDWDDWIKFYEFVYNTTPHTETKYTP
FT                 FELVFGRTANLPQEIYKHKIDPVYNIEQYYNEMKFKLQKSNEIARRNIIIE
FT                 KEKREKELNQHINPIDVSIGDLVYLKNENRKKLDPLYLGPFIITNIKDPNC
FT                 TIKNKHTQKTTTVHKNRLIKN"
XX
SQ   Sequence 5891 BP; 2534 A; 943 C; 898 G; 1516 T; 0 other;
     tggcgaccgt gacacagagc caaagcaaag gaatacgaac aaaacactga agtaagcata        60
     acgaaaggct gcaggttata aaaatcccgt tggacacggt atgtaaacac tatggtaaaa       120
     tttatatttt gaaaacaaaa ataccatagc gcgaaaagcg gacgaaggta tgtgtaaaaa       180
     gtatcgcaac aatcgcgagt gcaaatccgt cgtaaacact attatgcaca atacatatac       240
     actaagctca caaacactaa agtattcggc atagatgtac gtttagatca cattacactt       300
     ataaacacaa aagccgatac gcgtcgtaaa gtgagatgca ataatgtgca gtgacaccaa       360
     tacaaattag ttccgtgata caacaactgt gaaaaaactc acccgaaact gcatgaatat       420
     cccgaaacat caccaataca gtgctaaaaa tgaaatcaaa tgtgaattaa aagcaacaac       480
     aattacacat gcagtgacac ataaataccg aaccgaaata ctaatcagaa tagtgcacaa       540
     gaaagtgtga aactaagtgc gctaagtgaa accgaactga acaatcccat aatcgcagca       600
     gcagcagcac ttccacaacg aacaacacga ggaaagtgtt aagaacgata gaacgcgagc       660
     aacaatacgc gaggaagcag tcaacgacgc catcgcagta tacacatcga gcagctgtta       720
     aactacacat cgtgcatgcc gtaggacacg caaacgataa gtttcgttaa gtcaggtatt       780
     gtaaaattaa cactatggga tatatatgaa tattcagtaa aaaaaatata tatatataaa       840
     aaaaaattaa taaaaaaaaa gtaaataaaa aaaaataata ataataaaaa aaataggaac       900
     aattatagtt tttgcgaaat aattttattg gacttaaacg ttaattaatt atgttattta       960
     ttatgattgt cgttattatt taatggatcg aatttaatga gtaagttaaa ggataaatta      1020
     ttccagttaa ggttaataca acataaatta gagtatttac caaagaattt tagagtttgt      1080
     actgtaagta aatataaaat tttggctaga gaactattaa catccataca atcggatttg      1140
     atagagctcg gagaagccat aagtgaagag tatttaaaca aaattaacag tgaaaccaac      1200
     gaatgctttt cagcgattga gtttcgcata aacaattacc aaatgacaaa cgattcccaa      1260
     acagaaaaaa tggcgcattt cgatattaaa attgcaacat ctcttgttca aacatatgat      1320
     ggatcaaaag agaatcttga cattttcata gattctgtaa acttacttaa agagattact      1380
     ccaaatgatc aaaaggtaat gctggtaaaa tttatcaaaa cacgaataac agggaaagcc      1440
     agaataggat taccacgaga tctggacaac atcgatgaaa ttctagaaaa tataaaagta      1500
     agatgtgaag aaaaaacaaa tcccgaaata gtcatcaacc aattaaaaac tatccaggca      1560
     agacaaacca ctaaaatttg tgaagaggtc gaaatcttaa ctagcaaatt aaaaggactt      1620
     tatctagaac aaaaaattcc cgaagaagta gcaaacaaaa tggctgttaa agttggagtt      1680
     gacacactta aagaaaaaat ttccaactct gaaacaaaaa ttctacttaa agtcggacat      1740
     tacccaacaa ttacagcagc tacacaaaag gtattagaaa atgaaatcga aaacaataat      1800
     tcaaatcaag ttttagcctt taatagaaac caaaattttt ccacaaataa tttcaaaaga      1860
     tttcctaaca gcaaaacaaa taattataat agatataact cgaacccaaa cttccaaaac      1920
     agaactaaga ggaggtatta tgaaagtcca aattcaaata gaacgaaccc aaatacatat      1980
     accccaaata gaaacagaga tagacatttc tataggaacc ctagacaata taatcaattt      2040
     ggaagacaaa atacacagcc caataacttc tcaaatcaac aagctcgtag aatatttact      2100
     actgaagctg aagaagaaga ggaacagaat aattttttag gccaagcccg gcaggaatag      2160
     aacagctgcc ggtaatgaca ttgaatttat ctgccaataa ttcaactaca attaaagtag      2220
     aaaaagctgc aaataagtat agttcattat ttatagacac aggagcagca gtttcattat      2280
     ttaaaatagg aaaaattaga tctcagcatg agatagatag caataacaaa gttagactta      2340
     caggaattac taataactct ttaattacct atggtacaat tagttcaaat ttaatattta      2400
     acaacgcaac agttagtcat aaatttcact tgattccaga tattatagaa atagaagccg      2460
     atggaatttt aggaagagat ttctttacaa aatataaatg taagatagat tatgaatatt      2520
     atttgttaaa ttttgatatc aatggaatct caatatctca tcctatagaa gacaattcac      2580
     tcttaattcc agcaagaagt gaaattattc ataaaataga tttaaagaat ttaaaaaaag      2640
     attcagtagt tcatgcacag gaaataacaa caggaatatt ttgcgctaat acaatagttt      2700
     ccaagaataa tccatgtata aaatttatta atactactga aaaagatact attattaaca      2760
     cgaaattttt caaacctaca atagagccaa ttaataactt tgaaatttat aaagtagcag      2820
     aaactaaaac aaatatgcat agagttaaag aaatattaag caaaatcaat ttaaaaaatt      2880
     atccagatat tattagtcaa gaaataagta aactagtaaa taaattttct gatttatttt      2940
     gtttaaatga agacccaatt acaactaata atttttataa gcaaacaatt actcctaaag      3000
     acaatattcc tacatatata cccaactata aacaaattca ttcgcaaagc aaagaaatag      3060
     atcagcaagt aaataagatg ttagaaaata atataataga aaactccgtt tccccttaca      3120
     attcaccaat tctgcttgtc cccaagaaaa caggaaacga taagaaatgg agattagtag      3180
     tcgattttag gcaattgaac aaaaagatat taccagataa gtttccactt ccgagaatag      3240
     acacaatatt agaccaatta ggaaatgcaa aatatttcag cactctagat ctgatgtcag      3300
     gttttcatca gatccctttg gaaaaagaat cgcgaaaata tacagcattt tctacaccaa      3360
     aaggacatta tcaattcaca agactgcctt ttggactaaa cataagtcct aacagttttc      3420
     agcgtatgat ggcaatagca atggctggcc tcacacctga aatagcattc atttatatcg      3480
     atgatattat agtaatagga agctcaatga aaaatcatat agaaaatctt acacaagtat      3540
     ttaatagatt acgatactac aatcttaaat tgaacccaga gaagtgcaaa ttctttaaat      3600
     cagatgttac atatcttgga cacaaaataa cggaccaggg aatataccct gatgaaacca      3660
     aattcgaaac aataagaaag tttcctatac caactaacgc agacgaagtt agaagattcg      3720
     tagctttctg taattactac agaaaattta tacaaaactt tgcaaaaatt gcaaagccac      3780
     taaatgattt attaaagaaa ggcacacttt ttgaatggaa aaaggaacaa caaacagcat      3840
     ttgattcatt aaaggagcat ctgctatctc caaccattct taaataccca gactttagca      3900
     aagattttat tataactaca gacgcatcaa actttgcgtg cggagcagtt ctctcccaaa      3960
     tcacaaatgg gcaagatttt cctattgcat tcgcaagtaa aacttttact aaaggcgaaa      4020
     agaataagag tataatagaa aaagaattag tagctataca ctgggcagta aaacatttta      4080
     aaccatatgt ttatggacgg aaatttacaa tcagaacaga ccatagacca ctggtttatc      4140
     tctttggtat gaaaaatcca acgtcaaaat taaccagaat tagactagat ctggaagaat      4200
     ttgatttcac aatacaattc gtagctggaa aaagtaatgt tgcagcagac gcattatcac      4260
     gaatcgtgta caattcagat gagttgaaag aattgatccc aaaaactaaa gaggaggata      4320
     ttaaaagcat taaaaacaat tcaattatgg tagttaacac aagagcaatg gtaaaggcgc      4380
     aaaagaaagt aaaggataca ccaacagctg gaagaaataa agaagaagta actaatcaag      4440
     tattttggaa gacagataga ccgtcagaag ttaataagat tttgaaaatt aagtcagaag      4500
     ttaaaagaaa tggaatagaa atcaaagtat gtagtcacaa ctataataag caacttggaa      4560
     aaagggttat ccctcttaac aattctaaag gccaaaatgg aagtcaagaa atagaacttg      4620
     ctcttctaga tatatgccaa attgctaaga aatttaaccg agacaagtta gcaatatcag      4680
     ttgaggacaa attattcgaa tattactctc aattaaccat aaaggaaata gcagacacag      4740
     caattttcgg ttacgagata attttgtttg atccacctaa atggataaca agtgagaaag      4800
     aaaagttgaa aataatggaa gaatatcatg ccatacccac aggaggtcat atagggcaat      4860
     acagattata tttaaaaatt cgtgaaaaat ttaaatggaa taatatgaag caagatataa      4920
     taagttacgt gcagaaatgt gaaatatgca aagtcagcaa agtaaataag cacacaaaag      4980
     aaaaatctat aatcacatca actccagcaa aaccatttac catcatatca attgacacag      5040
     ttggtccatt acccaaaaca ataaataaca acagatatgc aattacgatt caatgcgacc      5100
     tatcaaaata tatagtgatc attccaatta aaaacaaaga agcaaacacg attgcgaaag      5160
     cattggttga acattttatc ttgacttatg gaagcttttt ggagcttaga tcagaccaag      5220
     gattggaata taacaatgag gtgttaagta aaatagccca aattttaaaa ataaaacaaa      5280
     cattttcaac gccatatcat ccacaaacaa ttggagctct agaacgtaat catagaagct      5340
     taaatgaata ccttagagca tttactaatg aacatcacga tgattgggat gattggataa      5400
     aattttatga gtttgtttat aacacaacac cacatacaga aacaaaatat actccgtttg      5460
     aattagtttt cggtagaaca gcaaatctac cacaagaaat ttataaacat aaaatcgatc      5520
     cagtttataa tatagaacaa tattacaatg aaatgaaatt taaactacaa aagtccaatg      5580
     aaattgcacg taggaacata attatagaaa aagaaaaaag agaaaaagaa ttaaatcagc      5640
     acataaatcc catagatgta agcataggag acttggtata cttaaaaaat gaaaatagaa      5700
     aaaaattaga tccattgtac ttaggtccat ttataattac gaatattaaa gatccaaatt      5760
     gtacaatcaa gaataagcat acgcaaaaga ctacaacagt acataagaac agattaatca      5820
     agaactaaat gaataacgca attctttcgc tcattcactc aatcttacgt tattcacaaa      5880
     aacgggggag g                                                           5891
//
ID   Gypsy16-I_Dpse repbase;    DNA;    INV; 5378 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   25-AUG-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy16-I_Dpse.
XX
NM   Gypsy16-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5378
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1100-1100 (2009).
XX
RN   [2]
RP   1-5378
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..2010
FT                 /product="Gypsy16-I_Dpse_1p"
FT                 /translation="MAKMPVTHSNENLDGIREQSDPFCYICNEVILVSELV
FT                 ASTPCNHRFHKCCIIEAITTTPACPICAACCLISQLRYGNNTLAAELGDAA
FT                 EEAETGIKDISATDSGAHTLRRMGGLYKNRGRGRPISSKGGVTTRSKSRHT
FT                 DPSRSEQEENLSGKSPDDIVRYIQNALSVQQENMIDDMVDILNKNIEETIQ
FT                 RQLATLNLNIATQAVENVETGNRQSGVRASLAGNISSHSSSRSRSNAQLAP
FT                 AKAANIIQNWRLKFDGSKNGMRMEDFIYRIRSLTEQNLNNDYQVLCDHLYL
FT                 LFANKASDWFWKFHRNHTNFSWETFCFEFRKRFEDAETDLDIWEKIRKRRQ
FT                 GENEVFDDYQCAIEDLADRLQQGMSESQLVELLIRNGKPSLHHELLHLRIS
FT                 NRSQLRVEVRKHEQFYNDIKACKPRTLRSYINELTDAYEKQTQVESNAPDP
FT                 EVLAIQRKPSNLTCWNCEKPGHRFDDCLEQRSIFCYGCGAKETFKPKCPRC
FT                 NPAGNRPAGVSIDKTWTHPKL"
FT   CDS           1950..5249
FT                 /product="Gypsy16-I_Dpse_2p"
FT                 /translation="SSGKPTGGCVDRQNLDAPETVKTPSIPVKLSNETKAK
FT                 TSLENKLEEAKPHFSTIPLHVRIANYNKLRDKLFGETINSKIHLTQRRSTK
FT                 RLRQYWKSIRSDRKKLVAAIFSKTDNRLYTEVCIEGNNYTALLDSGATLSC
FT                 VGGKAALEFLALGKTKKCSGNIRTANGTPSKVVGKLQTQITYRKKTAWLDL
FT                 FIIPGLKQDIYLGIDFWHQFGLTDSISNAQVSELDVGGETHDQELPKWHLL
FT                 SNEQQSRLKAVVEVFPSFAKQGLGRTNLITHKIEVGSATPIKQRHWPVSPA
FT                 IEKLMFAEVDHMLALDVIEESSSPWSSNCVLVRKGEKNRLCLDSREVNKVT
FT                 IKDAYPLPHIDGILSRLPPARFITGLDMKHAFWQIPLDEKSRQCTAFTVPN
FT                 RPLYQYKTMPFGLCNAAQTLCRLMDQVIPAHLRKCVFVYLDDLLVLSEDFE
FT                 SHLVTLQEISVCLKKANLTINIEKSKFCMREIKYLGFIIREGQILTDPGKI
FT                 KAVNEFPVPTSIKQLRRFLGLSGWYRRFVENYATISFPLTELLKNKKSIIW
FT                 NDDAEKAFNLLKSRLTSAPILITPDFTSQFILLCDASTYGIGCVLAQEREG
FT                 VELPIAYMSEKLSKAQRNYTVSELECLAVIKGIKKFRAYIEGQDFVVVTDH
FT                 ASLKWLMKQKDLSGRLARWSMKLQSFNFSITHRRGSENVVADALSRRNQPA
FT                 IEEFVASGPMIDLQSSHFKSPEYLSVIQRVQENQSKLLDLKVIDGYVYKRT
FT                 EFNRDNDGHEESWKLWVPSAMIPEVLQQAHDAPSSAHCGMAKTVEKLKRYF
FT                 FWPRMVSQIREYISECHICRSTKSPNKMLKPPMGRPLTSDRPFQCLYMDLL
FT                 GPYPRTKNGNIGLFIVVDHNTKFHFLSPLKKFTAPKMCEYLESSIFYTFGV
FT                 PEVVLTDNGSQFKSSCFEAFLTSFGITHRCTAIYSPQANASERLNRSVLAA
FT                 IRAYIGSDHSNWDANLNAINGALRAAVHRSTGYSPYFLVFGQNMILNGGDY
FT                 TLLRNVDLLSNDVRLEHSDLLQLARQDAKKNIKKSHELNAKKYNLRSRNVQ
FT                 LKTGDEVFARNFTQSNASKKFSSKLAPVFISAKVLKKKKPILL"
XX
SQ   Sequence 5378 BP; 1712 A; 1045 C; 1195 G; 1426 T; 0 other;
     caaacatggc gcccaacgtg gggcccgaaa agttttcttt aagtcccatt taagctctac        60
     aaatccatcc atttatttca catttgctgc acaacaagtt gttttgtatt cggctggaat       120
     cgatcggtgg acttagcgat tgcaattcgg ataccggatt gatcgaccct gatagatcta       180
     tgctgagcaa aataaacaat cttgacagga aacaatctca aagtgttttg gatttacgat       240
     gctctggaga atttcggaca ttgtccagca atttgagatg gttgtagatg aataacaaca       300
     atagttactt agttaaaata gaggaatgcg ctggaggaga gttttcgttt tttgtctgtt       360
     ttcttgtatt ttgagatatt gatgagctaa ggaaagacgg acattagggg ataagcaatt       420
     tgtttcgaga aagtttttgt gttagtgaat taacaataaa tggctaaaat gcctgttact       480
     catagtaatg aaaatctcga tggcattcgc gaacaaagcg atccgttttg ctatatttgt       540
     aatgaagtaa tcttggtctc tgagttagtt gcaagtactc cgtgtaatca tagatttcat       600
     aaatgttgta taatagaagc aatcacgacc acaccggctt gtccgatatg tgcggcatgc       660
     tgccttattt cgcaactacg ttatggtaac aatacccttg cagcggaact tggtgacgca       720
     gccgaagagg cagagacagg aatcaaagat atttcagcta cagactcagg agcccatact       780
     ctgagaagaa tgggaggcct ttataagaac cgaggcagag gtaggcccat cagttcgaaa       840
     ggaggcgtga ccactagatc aaaatcgcga catacagatc ctagtcggtc agagcaggaa       900
     gaaaatttat cgggaaaatc gccagacgac atagtaaggt acatacagaa tgccttaagt       960
     gttcaacaag aaaatatgat agatgacatg gtggatattt tgaataaaaa catcgaagag      1020
     acaattcaga gacaactggc tacactcaat ctaaacatcg ccacacaagc agtggaaaat      1080
     gtggagactg ggaataggca gtccggcgta cgtgcttcgt tagcaggaaa catctcaagt      1140
     cacagtagta gtagaagtag gtcaaatgca cagttagcac ctgcaaaggc agctaacata      1200
     attcaaaatt ggcggctaaa gtttgacgga tcgaagaatg gtatgaggat ggaagatttt      1260
     atatatcgaa tacgctcttt aactgaacag aacttaaata atgattatca agtactttgt      1320
     gatcacctgt atctcttgtt cgctaataag gccagtgatt ggttttggaa attccaccgt      1380
     aaccatacca atttttcttg ggaaaccttt tgttttgaat ttcgcaaacg atttgaggac      1440
     gctgaaactg accttgacat atgggaaaag ataaggaaac gcagacaagg cgaaaatgaa      1500
     gtttttgatg attatcagtg cgcaatagag gatttagcag atagacttca acaaggcatg      1560
     tccgaaagtc aattagtcga gttgctgatt aggaatggta aaccaagttt gcaccatgag      1620
     ctacttcatt taagaatatc aaataggtca caattacgtg tcgaagtgcg aaaacatgaa      1680
     caattctaca atgacataaa agcttgtaag ccacgaactt tgcgttccta tattaacgag      1740
     ctaactgacg cgtacgagaa acaaactcag gtagaatcga atgcgccaga tccagaagtc      1800
     ctcgcgattc aacggaagcc atcaaaccta acctgttgga actgtgaaaa acctggtcat      1860
     cgatttgatg attgtctaga gcagcgctct atattttgtt atggttgtgg cgctaaggaa      1920
     acgttcaagc cgaaatgtcc cagatgtaat ccagcgggaa accgaccggc gggtgtgtcg      1980
     atcgacaaaa cctggacgca cccgaaactg tgaagactcc tagtataccc gtaaaattgt      2040
     caaatgaaac aaaggcaaaa actagtttag aaaataagtt agaagaagcc aaaccccatt      2100
     tctctactat tccattacat gtaaggatag ctaattacaa taagcttcgc gataaattgt      2160
     ttggcgagac tataaattcc aaaatccatc tgacccaaag aaggtcgacg aagcgattaa      2220
     gacagtattg gaaatcgatt cgctctgaca gaaaaaaact ggtagccgcg atttttagta      2280
     aaactgataa cagactgtac acagaagtat gcattgaagg gaataactac actgcgctcc      2340
     tagactctgg ggcaaccctg agttgtgtcg gaggcaaggc agcactggag ttcctagcgt      2400
     taggaaaaac caaaaagtgc tccggcaaca tacgaactgc taatggaacg ccaagtaagg      2460
     ttgttggcaa attacaaact caaattactt atcgaaagaa aacagcatgg ttagatcttt      2520
     ttattatccc aggtctcaaa caagatattt atctcgggat agacttttgg catcagtttg      2580
     gattaacaga tagcatcagc aacgcgcagg tttccgagct agatgtgggt ggagagactc      2640
     atgaccaaga actccccaag tggcatcttt tgtcaaatga acaacaaagt cgcctaaagg      2700
     ccgttgtaga agtttttcca tcatttgcca agcaaggttt aggcagaaca aatttgataa      2760
     cgcataaaat agaagtcgga tccgcaacac ccatcaagca aagacattgg ccagtgtcac      2820
     cagcaataga gaaactaatg tttgccgaag tcgatcatat gttagcccta gacgtaattg      2880
     aagagtcttc aagtccatgg agcagtaatt gcgtgttggt gcggaaaggg gaaaagaaca      2940
     ggctttgctt agattcgcgt gaggtaaata aggtcactat aaaggatgct tatccgttac      3000
     ctcatataga cggtattttg agtcgattgc cgccagctag gttcataaca ggcctagata      3060
     tgaagcacgc cttttggcag ataccactcg acgaaaagtc acggcaatgt acggccttca      3120
     cagtgccaaa caggccacta tatcaatata aaacaatgcc gttcgggctc tgcaatgctg      3180
     cgcaaaccct ctgtcgacta atggaccagg ttataccggc ccatctaaga aaatgcgtct      3240
     ttgtatattt agatgactta cttgtgctgt cagaggattt cgagtcacat ttggtcacgc      3300
     ttcaggaaat ttcggtttgc ctaaaaaagg ctaatctgac tattaatatt gagaagtcca      3360
     agttttgtat gcgcgaaata aagtatttgg gattcatcat tcgagaagga caaattctga      3420
     ctgatccagg gaaaataaag gccgtcaatg agtttcctgt tcctacatct ataaaacagt      3480
     tgcgtcggtt cttaggattg tctggttggt atcggcgatt tgtcgaaaat tatgccacca      3540
     taagctttcc actgacggaa ttgttaaaga acaaaaagtc tataatttgg aatgatgatg      3600
     ccgaaaaagc tttcaatctt ctaaaatcgc gtttaacatc agctccgatt ttgattaccc      3660
     cagacttcac aagccaattt atcttactgt gtgatgcaag tacctacggg ataggttgtg      3720
     tcctggcgca agagcgtgag ggagtggaac tcccaatcgc gtatatgtcg gaaaaattat      3780
     cgaaagccca aaggaactac accgttagcg aactggaatg cttagccgtt atcaagggta      3840
     taaaaaaatt tcgtgcctat atagaaggtc aagattttgt ggtagtaacg gatcatgcgt      3900
     ctttaaaatg gttgatgaag cagaaagatc tttctggaag actagcgagg tggtcgatga      3960
     aattacaatc attcaatttt tctattacac ataggcgagg gtcagaaaac gttgttgctg      4020
     acgccctgtc tcgacgtaac caacctgcta tagaagaatt cgttgccagt ggtcccatga      4080
     ttgatttaca gtcaagtcat tttaagtcgc cggaatatct tagcgtgatt caacgagtac      4140
     aagagaatca gtcaaaactg cttgacttaa aagttattga tgggtatgtc tataaaagaa      4200
     ccgagttcaa tagagacaat gacggacacg aggaatcctg gaaactttgg gtaccctccg      4260
     cgatgatccc cgaagtattg caacaagcac atgatgcgcc aagctctgca cattgtggta      4320
     tggctaagac ggtagaaaaa ctcaaaaggt atttcttctg gccccgaatg gtaagccaaa      4380
     ttcgagagta catctcagaa tgccatattt gtcgatctac taagagtccg aacaaaatgt      4440
     taaaacctcc gatgggccga ccattaacat cagaccgccc ctttcaatgc ttgtatatgg      4500
     atctactagg tccgtacccc cgtactaaaa atggaaacat tgggttgttt atagtggtag      4560
     accataacac gaaattccat tttcttagcc ctctaaagaa gttcacggcg ccaaaaatgt      4620
     gtgaatacct ggaaagctcc atattctaca cctttggagt gccggaagtt gttctaacgg      4680
     ataatggttc gcagttcaaa tcaagttgtt tcgaagcttt tcttacaagt tttggcatta      4740
     cacatcggtg tacggctata tattctcctc aggccaatgc tagtgaacga ttaaacagat      4800
     cggttctggc agccatccgc gcttatattg gaagtgacca ttccaattgg gacgctaatt      4860
     tgaacgctat caatggtgca cttagagcag cggtgcatcg aagtactggt tattcaccat      4920
     atttccttgt ttttggtcag aacatgattc tgaacggagg agattatacc ctattgcgaa      4980
     acgtggatct gctaagcaac gacgtccgat tagaacactc cgatctgtta caactggcaa      5040
     gacaagacgc taagaaaaac ataaagaaat cacatgagct taacgcgaag aaatataatc      5100
     tacggagtag gaacgtacaa cttaaaacgg gtgacgaggt ttttgctcgt aactttaccc      5160
     agagcaacgc gagtaagaag tttagttcga agttagctcc ggttttcatt tctgcaaagg      5220
     ttctcaaaaa aaagaagccc atattattat gagttggtga acccagcagg gaaaaagatt      5280
     ggagttttcc atctcaaaga tattcaggtg aagaataaat aacagcattt ttttcagata      5340
     atgtaccttc gagcaggtct tgtttcatta tctgtggt                              5378
//
ID   Gypsy16-I_Dya repbase;    DNA;    INV; 4823 BP.
XX
AC   chr2h;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dya;
KW   Gypsy16-LTR_Dya; Gypsy16-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4823
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1101-1101 (2009).
XX
DR   Genome; chr2h; Positions  613583  618405.
XX
CC   Positions [2697-3173] - Integrase core
CC   LTRs are 90% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1419..3323
FT                 /product="Gypsy16-I_Dya_1p"
FT                 /translation="MKCQLDKCEFMKNKVEFLGFVVSDRGIETNPSKVAAI
FT                 ANYPCPKTLRDLRSFLGLSGYYRRFIQNYAKLAKPLNSLLRGEDGHVSKRM
FT                 SSKKIISLDKEALESFKKLKSNLVSKEIILRYPDFKEFHLTTDASNFAIGA
FT                 VLSQDNHPISFLSRTLSKAEENYAANEKEMLAIIWALKAVKNYLYGKAKVK
FT                 IFTDHQPLTHSLSSWNGSARIKRWKAYLEEYDYKIFYKPGKENVVADALSR
FT                 IPLEQINSVASTQHSAESSRHDLIPSVEAPINVFKNQIFFYKSNKYDYKFT
FT                 IPFPTFHRHEIYRLEYTTDDILTDLKKHLKPSVINGIHTTEDIMGKIQTTY
FT                 RSHFKGIKTRFTQFRVEDLTDETEQEERILQIHRRAHRNALENQKQLAETY
FT                 YFPRMKQKIIHLVKQCKLCKKAKYDRHPPNPEIQETPIPEYPGHILHIDIY
FT                 STERHLVLTAIDKFSKLAQARIINSKAIEDIRTPLRDIIFYFGVPKHIVMD
FT                 NEKAFNSQSIKFMLEQLQIEVYTAPPYKSSVNGQVERFHSTLSEIMRCLKK
FT                 EGTERNFKELLERAVYEYIYSFHSVTKKRPLEVFFGRRVTTDPDQYETARQ
FT                 DNIERLKNKQEIDRTNHNKKKNEILNYQPGEEDIGKK"
XX
SQ   Sequence 4823 BP; 1856 A; 979 C; 802 G; 1186 T; 0 other;
     aagtaattaa ctggcgcccg aacagggacc ggtgcgcgta cgatacaaca aaacgttttg        60
     taagttcgcg gctcgcaata acatttgcgg caaccggcct aatcgcgagt gacaagaacg       120
     cgcaactcac ggaaaattaa catctttcgt tcgttcaaat tccctctggc atatcgaact       180
     taacatgttc atttgcccat cggtggactc caaggactga aggcagggcc acagaccacc       240
     cctcaaccct gtacgcatcg ctggatccca agtagtcttc gttagataaa caggatgaaa       300
     tccggatcgt cggagggagg agccacatca aaaagaatac ccatagtact gtaagcttaa       360
     ccaaccaaat ttaaaaaaaa aaaactcaaa actaacaaac aaattgaaca aagaaacata       420
     taaatttaag tgatcaatga aaaaataaat agaataaatc acctttcaat gctgtctcag       480
     taggcggcag cacagtaatt acgcatcata cggtagcaaa cctttttaat attcaggatg       540
     ttgaagtaaa attttttctg ttgcccaatt aaaatctttc gatgccattt tgggcaatga       600
     tagtttaaaa gaattagggg cagtaataaa aatcagcaaa aatattatga tattaaagaa       660
     cggtctctcg atccccataa aagaaaaaac attcgaagca gtcgacacaa ttattccgag       720
     aacatcccac ttgtccgaca aacaaaaaac caagctaagc gaactactca agtcgtttcc       780
     agacttgttc gcagacccaa accaaaaact gacctacaca actaacgtaa aggcaacttt       840
     ccgaacctcg tccgataatc ctatttactc aaaattctat cagtatccaa tgacactgaa       900
     agatgaagta aacaaacaga gaaaagaact tttagaagat ggtataattc gaccttctag       960
     gtctccgtac aattcaccag tgtggattgt acccaaaaag gcagacgctt caggcgaaaa      1020
     aaaatatcgc atggttattg attatcgcaa actcaataaa ataaccattg cagataaata      1080
     ccctattcct gagataaatg aagttcttac ccaattagga gtataaagta ttctccgttt      1140
     tagatctgaa aagtggtttc catcaaatct cgttaaaaaa tagtgacata gaaaagaccg      1200
     ccttctccgt aaacaacgga aaatatgagt ttacacgact cccatttggt cttaagaatg      1260
     tgccctcaat tttccaacgt gcattagatg acatacttcg tgaacatatt ggaaaaatat      1320
     gttttattta catagacgat atcatcatat ttagcaaaga tgatgatacg catattgaga      1380
     acttggctaa aatttttcaa actttacaga acgccaacat gaaatgtcag ctagacaaat      1440
     gtgagttcat gaaaaacaaa gtcgaattcc ttggatttgt tgtctccgat aggggaatag      1500
     aaacaaaccc gagtaaagtg gcagcgatag caaattatcc ctgccctaaa actttgaggg      1560
     atctaagatc cttcctaggc ctttccggct attatagaag atttatacaa aattatgcca      1620
     aattagcaaa acccctaaat tcacttttaa gaggggaaga tggacacgtg tccaaaagaa      1680
     tgtcatccaa aaaaataatt tcattagaca aagaagctct agaatctttc aagaagctta      1740
     aaagtaactt agtgtcaaaa gaaataattc tccgttaccc agatttcaag gagttccatt      1800
     taactactga tgcttcaaat ttcgcgatcg gcgcagttct atcgcaagat aaccacccta      1860
     tatcatttct ttctagaaca ctttccaaag ccgaagagaa ctacgcggcg aacgaaaaag      1920
     aaatgttagc cataatttgg gcactcaagg ccgtcaaaaa ttacctatac ggtaaagcaa      1980
     aggttaagat ctttacagat catcaacctt taacacattc tctgagtagc tggaatggaa      2040
     gcgccagaat caagagatgg aaagcttatt tggaggaata tgattataaa atattttata      2100
     aaccaggaaa agaaaatgtt gttgcagacg cgctctcaag aataccttta gagcagatta      2160
     actctgttgc ctctacacaa catagcgccg aaagttctag acatgaccta atccctagcg      2220
     tcgaagcccc aataaatgtt ttcaaaaatc aaatattctt ttataaatca aataaatatg      2280
     actacaagtt caccatccca tttcctactt tccatagaca tgaaatatac agactcgaat      2340
     acaccacgga cgatatacta acagacctaa aaaaacacct aaagccttcc gtaattaacg      2400
     gcattcacac gactgaagac attatgggaa aaatacaaac aacctacaga agtcacttta      2460
     aaggaatcaa aactcgattc acccaattca gggtagaaga cttgacagac gaaactgaac      2520
     aggaagaaag aattcttcaa atacatagga gagcacatcg aaacgctcta gaaaatcaaa      2580
     agcaactagc agaaacctat tattttccaa gaatgaaaca aaaaattata catttagtta      2640
     agcaatgtaa actttgcaaa aaagctaaat atgacagaca ccccccaaat ccggaaattc      2700
     aagaaactcc tattccagaa tatcccggtc acatattgca cattgacatt tattctacag      2760
     aacgacactt agtactcact gcaatagata agttttctaa attagcgcaa gcacgaatta      2820
     taaattcaaa agcaatagaa gatatcagaa cgcctttgcg tgacattata ttttatttcg      2880
     gagtcccaaa acatatcgtt atggacaacg aaaaagcttt caattcccaa tcaattaagt      2940
     tcatgttgga gcagctacag atagaagtct atactgcccc accatacaaa agttccgtta      3000
     acggtcaggt agaacgattc cattcaacac tctcagagat aatgagatgc ctcaagaaag      3060
     agggcactga gagaaatttt aaagaacttt tagaaagggc agtttacgag tacatttaca      3120
     gttttcattc ggttacaaag aaacgaccat tagaagtatt cttcggtagg agagtaacaa      3180
     cagacccgga ccaatacgag acagccagac aagacaatat tgaaagactt aaaaataaac      3240
     aggaaattga ccgaacaaac cacaataaga aaaaaaacga aatactaaac tatcagccag      3300
     gagaagaaga tataggaaag aaatagttaa ggaaaacaag cacactacag taacaacaga      3360
     atcgggaaaa acggtacata aaagccatat caaaatctaa aattttttca gaatattact      3420
     atggattacg aacgatgtca gtggaacgat gaaccttaca aactatacga acgcacagat      3480
     actgacaatg aacaagggga tcggaaaact acaaacctca acaactaaac taatacacct      3540
     cattaacctc gaccaaatcc aaaccgcttt agatatttta catgaacata cggaaaatag      3600
     ccttaaacgc agtccattat acgctaccct tcaccatgag ataaacacaa ctactcacat      3660
     attccgaaca atcacagcct ttcccaaaac tcgaaaaact aggtccttaa attggctagg      3720
     gtcaggatgg aagtacataa cgggtagccc agatcatgat gacctggtta tgatagagca      3780
     gaacttagat aaacttattg acaataatat taacaaacag ttagaagttc ttccttctaa      3840
     ataaactaac ttcagtatct aatgctctca gcaattctat taaaaaaagc agttcagtaa      3900
     gtatcgagac ggctattagt ttgcacaacc agattcgcct tttaaaagaa gaaattatta      3960
     acattaaata tgccattcaa tgggcacgat taaacgtagt taacacactt gtattaaatg      4020
     aagatgagct aattgaaatc gagaaaattt ttaaaagaaa taatatgcca accctatcaa      4080
     tggaagaaat aatggagttt tccgatgtgt caattctaca taataaaaca acacttctgt      4140
     atattgtaaa agttccaaac ttagaagaaa tacaatacca agaccttatt ataaaaccca      4200
     tagtaaaaaa caattcaatc atacacttaa actttcaaga aatctttgtt aacaaaaaca      4260
     ttacctatgg cattccccaa acttgtaaaa ccgtagaata tataaaaata tgcgataaga      4320
     aaaaaattgt taatataagt aattcaaaat gtataccaaa gctagttcag ggacagaaag      4380
     cgctgtgtag ttttagcaat gccgaccatg tacccaaaat agaagaagtc gacgatggaa      4440
     tcattctact aaacgactac gatggaaacg caacatggaa caacacagaa cttcacctag      4500
     agggcaccta tctggttcaa ctatcaaatg actcgataat tatcgacaac cagcagttca      4560
     gcaacttgga acctacagtc tcgacccccg gagcacctct tgtgcagttt acggccgaag      4620
     aaaaagaaag acttaaggtt ctatctcttg aagcattgga agcattgcac ataaacaaca      4680
     ctggacagct gatgaacata agaacacatt caacagttaa cagcattact ttgttaacgc      4740
     tctttgggat tgtgctggtt ctcatcctgg gtttgcacat ctatagccaa cggaagagga      4800
     gggggaagag ttaacaacaa aaa                                              4823
//
ID   GYPSY16-LTR_AG repbase;    DNA;    INV; 750 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY16-LTR_AG is an LTR of retrotransposon GYPSY16_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY16_AG; GYPSY16-I_AG; GYPSY16-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-750
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY16_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 174-174 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY16-LTR_AG is a long terminal repeat of GYPSY16_AG
CC   (its internal portion is deposited as GYPSY16-I_AG).
XX
SQ   Sequence 750 BP; 297 A; 127 C; 137 G; 189 T; 0 other;
     tgtagcatag gttcgacacc cgacactatt agacttagca aattagaatt agattagaat        60
     agcaaagaca caattattag tataacatcc gctataatta tctgcagtaa attcattaca       120
     tcctagacac aaaccgcact aaggctagaa tgaaacagct aatgatagaa tgaaatagca       180
     tgataagtgg cgtgatcgta ttcaccaaca cactcaaaag aaatagtttt tacaagtata       240
     aaattttaga ttaaacatta tcagaacata aattactgta attagatgca cacaaatatt       300
     agacataaaa gtgcaatatg ttctaatccg aaccaactag ataaataggg aaaatttaat       360
     agagttcatc caattgcgca gtaggataat acacatggaa ggacgatgtt acctaatgta       420
     cgcaaaaagt cacgtacgca taatgcagga gatagagcag gataataaat tgtaatcatg       480
     cataacggag cggataagct aaatatgccc ataagcgcaa tgtaattatt tcgtataaaa       540
     ggaagctcgc gcgtagctag aggagagttg ttgtatcagt aaaatcacgc agtccagtcc       600
     gccgcgcaaa atttagttcg caaatcatta gaagccaacc acgctattaa gtttaagtaa       660
     agtggcaaaa ataaagtgag tttatataaa agtgcaaata caatccgtct ttagtcagga       720
     acggcactaa gtgatgacaa gttcactaca                                        750
//
ID   Gypsy16-LTR_Dpse repbase;    DNA;    INV; 2065 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   25-AUG-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy16-LTR_Dpse.
XX
NM   Gypsy16-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2065
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1102-1102 (2009).
XX
RN   [2]
RP   1-2065
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 2065 BP; 678 A; 401 C; 396 G; 590 T; 0 other;
     tgtagtgtcc aactattcga aaatcaaaag aaaaaaaaaa aaaaggaaaa ggtcgaacaa        60
     ggtacacttt aggtacactt tctagaaaga tacttttcat accgccctcg ctagcatagc       120
     tcgaagaaat tggtggaatg caggagatcc agaagatcat ccgattgcac agttatgtta       180
     aagcttaaag ctcagcttag gcatgcaata ggtacaggcg aatagacttt attcatgtga       240
     aatcattccc ctgcatagtt tcacttacgg cacacgtata tatagatttt cgtgattttc       300
     gcaatcgcag agtgaatggt gaagacacgt ggagttacat aacttccaat ttttcactat       360
     tatctaatca tccgctgttt atatggatta ataaatccga agagtggcgt tagctgaact       420
     acccgaggga aaagtgaaaa taaagtgaaa ttcttgaaag aagcaaaggt acgttagtcc       480
     accgtggaaa gataaggttc tgacacagtt ttatttaggg ataggagtac tggaaaatct       540
     taatacagcc aagccggcca accaatctac ggtatcaact actaaaacaa ccaagctgac       600
     cgtttgggag ttagtgcagt gcacatccac ggcggcaaag tgaaggctga accgttgacg       660
     ttgggctagc tcaatatcgg aaatcattta cggctcgtga aagaccaacc accatacacc       720
     actgctggac gtccgaattt cagtttgaac ctgccgatct cataaaaaaa aagccggagg       780
     acataatcgt caccaaccta cgaaaactta caaaggattg agtaattagg ctagcctaaa       840
     ccacattgcc tcagaaccac tcttgctgtc agcagatttg tgtttatttt gattcccgtg       900
     tttctcaaat taaatttcaa gtgcaagttc ccgtttgcct ttatcactat cacataaaaa       960
     tctatacgct gctgctctaa gaaccagctg attagatcca catattcata tctcgtttat      1020
     cattgtgttg attaatgtag taactaaata gcttcctcca atgagtaaat ttgtaacgta      1080
     actgacgatt ttgaaaactg agcaatatga gtttgggata atgtgtttct ctttatatat      1140
     atatatacat ttatactgac caacctctaa attacacagt gcatacaaat gaatccgtca      1200
     aagtcatctt gggcccaacg atacaccgat gagtttaacc aattactgtg agtaccacta      1260
     gtggctgaaa ccacaatgtc tatacaccaa tgcaggcgta agtttgttga agtagatata      1320
     tatatactga tttgaaagaa tattaccccc ctcaaatgct caaataatta agtttttttt      1380
     ttgctgatcc aagaagaagg aagtctgtat atttttgttt atttgtaaat gtaaggaatc      1440
     ggattatatc tgtaattaat gtaaaaaaaa aaaaatatat atatcaatac aatctcacat      1500
     ggttagggac atttaacata aaaataaaag gaatttgtaa tcatgaatat gtctgcctaa      1560
     actaaatatt atctccgtcc gtcaagtact tatgcttatc tccctcaaaa tgcactagaa      1620
     gatgttggat ctttgaattg ggacaacgcc cgaatgtaaa cgcgtttgtc atggttgggt      1680
     gggtaaagac tagggacata tatcaccgct gttccctcca tcagacagaa gacgaactac      1740
     actttttcta agcgttttct aaatgcgtat cggcgcagag tggaaatgag ttttttttat      1800
     tggttattga tattaacgtc gagatcctgc ttattttttt ttttgaagcg cattatattg      1860
     atttgtgtca ggaaaactgt gtagctaggg gagaaagaac cccgaccaat ccgacgagct      1920
     ggacccgagc acagcaagaa tgcgcgcatt cgaacctagc ttcctattaa catgaggtca      1980
     gaaaaaaacc atctattggc cactgtcgga gttagagcct aaataggctc tggccccaac      2040
     tcactggcaa agactgaaca ctaca                                            2065
//
ID   Gypsy16-LTR_Dya repbase;    DNA;    INV; 425 BP.
XX
AC   chr2h;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dya;
KW   Gypsy16-I_Dya; Gypsy16-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-425
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1103-1103 (2009).
XX
DR   Genome; chr2h; Positions  613158  613582.
XX
SQ   Sequence 425 BP; 127 A; 110 C; 83 G; 105 T; 0 other;
     tgtttaaatc cagaacaatg aaccccaata agcaagcttc aatctgcaag ctcagcgtct        60
     gcataatttc ctgcacacgc cgagctgcca agcagaattc gataatttcc tgcacacgcc       120
     gagctgccaa gtagagttcg aagaatctga ttggtaacaa catccgctcc caccaatgca       180
     agtgattcca agaagactgc actgatttga ccagcaaaac atcagccgat gtcgtggcct       240
     attggaaagc tacggagccg acgccgatcc tctgccacca agggcagcgc agctcacagc       300
     caaagactca cagcttgcta gggacagctt agggtaattt agttgcaaat tggatttata       360
     caaataaagt cgttcttaac tgaactccaa tttattttat tatttttttt accttgctaa       420
     ccgca                                                                   425
//
ID   GYPSY17-I_AG repbase;    DNA;    INV; 6793 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY17-I_AG is an internal portion of retrotransposon GYPSY17_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY17-I_AG; GYPSY17-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY17_AG; mdg1 lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6793
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY17_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 175-175 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY17_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY13_AG,
CC   GYPSY14_AG, GYPSY15_AG, and GYPSY16_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY17-I_AG consensus was reconstructed after multiple
CC   alignment of 6 copies.
CC   The consensus encodes the 454-aa GYPSY17_AG1p gag-like protein
CC   (pos. 1761-3122) and the 1260-aa GYPSY17_AG2p (pos. 2966-6745).
CC   The sequence of the LTRs flanking GYPSY17-I_AG is deposited as
CC   GYPSY17-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1761..3122
FT                 /product="GYPSY17_AG1p"
FT                 /translation="NPNFDHMTKLKEIVRRLELIHKTLQQNKGNIRQCALA
FT                 TYRLQVDEIYSVFRKEIETNYDKYSDSEIKFYNNIIQNLITNIVEKVNNET
FT                 INTDNNTSDLNETLKSHKKLTLKTTAHVIISILSIYKRQKQIVPTANIDHT
FT                 AIKTNTSVDSSYKPNMDALEILKTATSLIPTFSGRYDEAEAMLAALETMKE
FT                 AVDEQHHRLIMRVVQSKLKGKGRKIIGKTVTNIEDALAKIGAYVKKTESPE
FT                 DIATAIHALKQKTTPKDFGEEIQALAEELEQAYLGEDVAPALATAKTNKIA
FT                 MAAFGKGLKKEIHQAIVLSGTIPTLDAAIRAIISIDKTNQSTQDKKSDNRQ
FT                 NGQENRYSSNQRQTNTRGIDQRQNNNNWRFPPQQNNNSWRSQPQQNNNNWR
FT                 SPQTQNGRQGAGFNTRNRQPAGPNFLGQREPQRAILYTQMETQNPQVDQPS
FT                 TSHYGQHTQ"
FT   CDS           2966..6745
FT                 /product="GYPSY17_AG2p"
FT                 /translation="TGSRVQHPKQATRRPKFFRATRTAKGNPLHANGDPEP
FT                 TGGPALHKPLRATYTINVQKSNFIRTRLGLADSICNLFVDSGSDISIIKGN
FT                 KVRPTQIYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDN
FT                 FKIPADGILGRDFFMNHRCIINYDTWIFSVKHNGEFLEAPIEDTINGKTLI
FT                 PPRCEVIRKLDKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINTS
FT                 NKAKLVNISHIKTIPLNEFEIVKTSNHKDENRLAIIKDLIRKENISEDTDK
FT                 SFEQLLLSYNDIFHLPNDHLTTNNFYEQDIKLEDKRPVYIPNYKQNHSQGP
FT                 EIKKQIEKMLQDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKK
FT                 LLPDKFPLPRIDSILDQLGRAKFFSTLDLMSGFHQIPLEESSKKYTAFSST
FT                 DGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVVVGASEN
FT                 HHLKNLEKVFERLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKY
FT                 DSIKNYPIPQNADDARRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEW
FT                 TQECQEAFEYLKNTLISPQILQYPDFSKQFILTTDASTIACGAVLAQEHDG
FT                 IDMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGTKFTVKTDH
FT                 RPLVYLFGMKNPSSKLTRMRLDLEEFDFTVEFVKGKQNVVADALSRIKITS
FT                 DEIKSINVITRSMNKPVTSDNVLGNTSESDQLKMFHALAYDEVKDLPKLET
FT                 SVKRNENTIELIGKILNKRKSKELLSVRDIHLNTDIGLQEPLLVKDFQKRK
FT                 EKSAIVQFIKNIEKKLVMKSITQLAVSETDEIFKEVNPNEFKQIANNHLKN
FT                 IQILIYTKPQTINDEKTINDILDKVHNTPTGGHIGQYRMYKKIRKEYVWNK
FT                 MKKSIKDFLDKCITCKLNKHLIKTVEPFVKTDTPNIPFEVVSIDTVGPFQK
FT                 TNNNNRYAVTLQCNLTKHVTVIAIPNKEANTVARAVIEKFMLIYGTNIKEF
FT                 RTDMGTEYKNEIFKNISEILRIEHKFSTPYHPQTIGALERNHRCLNEYLRI
FT                 FTNEHKDDWDDWINYYSFAYNTTPNLDHGYTPFELVFGRNEKISTNITEKS
FT                 TPLYNYDDYSKEFKYRLKLAHDRTRKHIEQEKMKLLKEQQNINQVNFQIGD
FT                 QIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTDGVTQNIHKNRAIKI"
XX
SQ   Sequence 6793 BP; 2779 A; 1286 C; 1173 G; 1555 T; 0 other;
     tggcgaccgt gacagcgtag caaaaacaaa gctacaagaa cgttaaagtg cagtgaaaaa        60
     aataaaataa aagtgcagtg ctgtggagaa aaagttatac gcaaagtgcg gtgcgtggaa       120
     aaaaatacag tagaaagaaa aaggttaaag aaagaacggt gtcagttttt accacataac       180
     cattatcgtg agaactcaat acagtgcccc aataatctaa taagcaataa agtgatcttt       240
     aatcgatttt taacaaagtg cgagtggtgc agtttgaggc ataaggtaac accaaacgcg       300
     ggaaataaat aaaaacgttc caagtgcaat ctaaaagtgg cacaagttta aaagttagca       360
     aaaacacatc gttgcgcaca agtatcaagt acccgaaaag cagtgcagga agtgaaatcg       420
     cagtgtcagt aaactgaaaa aagtagcgag tgtgtatatt tattctggca taacacacat       480
     aagctatggg tcacgataac tcaaaaccgg aaacaaacgt taagggcaat aacgacctca       540
     ccatcgttca gacccaaaac atacacactg aacaacacga ggcacacgag ttcaaactta       600
     acctgatttt ggctctgctc gcgttgattg ttattgcaaa agcgctcaaa atagtgtaca       660
     aaatagtgaa aaatcaggcg aaagaacaag ctgtaaagat gttgtcttta cctaaataaa       720
     tagtgaagaa aaaaaaaaga aaaaaaacat tagtgaagca ataattcgga tataaaagac       780
     aaagtgccga tcaagtgttc atcagacgac aaccacaagc cgcaaaccag gaagacgcac       840
     actgcccacc tgcaagccgc cgtagccgcc cgcctacaag gaagtcgtaa ccgcctacca       900
     ggaagaccaa gcgcccacca gcaagcgagc gcagccgctt accaagaaga ccaagccgcc       960
     caccagcaag cagcctacca ggaagaccaa gcgcccacca gcaagccatc gcagccgcca      1020
     ctaactgagg agatgagcac ctggcacggg ctgagaaatt ttaacgaaga cggtgaatac      1080
     gtggggccat acatcccgaa caagaaggat gtcgaggatc aacgaatcga gatcctggag      1140
     ttactgaaaa acgccggcaa caaggagata gaaaacaagg tagaacacat atatactagc      1200
     tataaagaaa ataaaataac aactcgggag acatttgaca aagccacaga tgtcttaatg      1260
     acattattag ggctgtagga ggaataaaaa caattaaata acaagaaaaa aaattttttt      1320
     ttcatacata ttattaacaa caagaaagaa atttttagtt tttttttact atcaataaaa      1380
     aataaaataa aataaagtct tcttttacaa aaaaaaaact tatacaaatc cactcgcata      1440
     gaaagaaaat aacatttacg tttgtccacc ttggaaaata tttcctctca ctttttccgc      1500
     ttttaaattt tttttctaaa tactattcac aattagaaac tcaaaaaaaa aatcaatcaa      1560
     taaataaata aaataaaata aagaattttc ttcttttttc tcaacatata aaagaaagaa      1620
     actttcctcg actctcgagg aaaaccagat tttattttat ataagctttt atataaaaat      1680
     ataagtctgc tttctctaga aaaaataaat tgtacttgat tttatgtatg aacttaaatt      1740
     ttttttccca caatcattga aatccaaatt tcgaccatat gactaaacta aaagaaattg      1800
     ttaggagact agaacttatt cacaaaaccc tacagcaaaa caaagggaac attagacagt      1860
     gcgcattggc cacatacaga ttacaagtag acgaaatata ttccgtgttc aggaaagaaa      1920
     tagagaccaa ctacgacaaa tacagcgact cagaaatcaa gttctacaac aacattatcc      1980
     aaaatttaat caccaacata gtagaaaaag ttaacaacga gacaattaac accgacaaca      2040
     acactagcga cttgaatgag acattaaaat cacacaaaaa actaacgtta aaaaccacag      2100
     ctcacgttat aatatcaatt ttatctatat ataaaagaca aaaacaaatc gttccgacag      2160
     cgaacattga ccacacagct attaaaacaa atacgagcgt agactcaagt tacaaaccaa      2220
     acatggatgc tttagagatc ctaaaaacgg ccaccagcct catacctaca tttagcggta      2280
     gatatgacga agctgaagcc atgttagctg ctttagaaac aatgaaagaa gcagtggatg      2340
     aacagcacca cagactaata atgcgggtgg tacaatcaaa actaaagggg aagggcagaa      2400
     aaatcatcgg aaaaacggtg accaacatag aagacgctct ggcaaaaatc ggtgcatatg      2460
     ttaagaaaac agagtcgcca gaagatattg ccaccgcaat tcatgcatta aaacaaaaaa      2520
     ctacaccaaa ggattttggt gaagaaatac aagctctggc agaagagcta gaacaagcat      2580
     atcttggaga ggacgttgca ccagcactgg caacggcaaa aaccaacaag atagcaatgg      2640
     cagcttttgg aaaagggctc aaaaaggaaa tccatcaggc aatagtattg tccggtacca      2700
     ttcccaccct tgatgcagct attagagcaa ttattagcat cgataagacg aatcaaagca      2760
     cgcaggacaa aaagtcagac aatagacaga atgggcagga gaatagatac agctcgaatc      2820
     agcgtcagac aaacactcgt ggtatagacc aacgtcaaaa caataacaac tggagattcc      2880
     caccccagca aaacaataac agttggagat cccaaccaca gcaaaataat aacaattgga      2940
     ggtcaccaca aacacaaaac ggtagacagg gagccgggtt caacacccga aacaggcaac      3000
     ccgccggccc aaatttttta gggcaacgcg aaccgcaaag ggcaatcctt tacacgcaaa      3060
     tggagaccca gaacccacag gtggaccagc cctccacaag ccattacggg caacatacac      3120
     aataaatgtg caaaaatcaa attttattag gacaagatta ggtctagcag attcaatatg      3180
     caacctattt gtagattcag gttccgacat ttctatcatc aaaggcaaca aagtaagacc      3240
     tacacaaatt tataaaccaa aagatatagt ggatatcata agcgtaggag aaggaacaat      3300
     aaccactcat gggtccacaa ttacggatgt aatcgtggag ggaaagaaaa tccaacaatt      3360
     atttcacatc gtaccagata acttcaagat accggcagat ggtatactcg gtagagattt      3420
     ttttatgaac caccgatgta taataaatta cgatacttgg attttctctg taaaacacaa      3480
     tggagagttt ttggaagcac ccattgaaga tactatcaat ggcaaaacac tcatacctcc      3540
     cagatgtgaa gtaattagaa aacttgataa gttaaaagaa ttagatacag atgcggtagt      3600
     atgcgcagag caactgcaag aagacgttct tgtaggtaac tgcattgtaa ataaaaacta      3660
     cccatttatt aaaataatca atacttccaa taaagctaaa ttagtaaaca ttagccatat      3720
     caaaacaata cctttaaatg aatttgaaat agtaaaaact agcaatcata aggatgaaaa      3780
     taggttagca atcataaagg atttaatccg aaaggaaaat atttccgaag atacagataa      3840
     atcttttgaa caattactgt taagctacaa tgatattttt catctaccta acgatcattt      3900
     aactacaaat aatttttatg aacaagatat aaaattagaa gataaaagac ccgtgtacat      3960
     accaaattac aaacaaaacc attcccaagg accagaaatc aaaaagcaaa ttgaaaaaat      4020
     gcttcaagat gatgtaatag aacactcggt gtcacattac aattcaccca tcttactggt      4080
     tccgaaaaag tcctcagatg agaaaaaatg gagattagta gtcgatttta gacagcttaa      4140
     caaaaagctg ctccccgata aatttccact acctagaata gactccatat tagatcagct      4200
     agggcgagca aaatttttta gcacattaga tctcatgtca ggattccatc aaataccact      4260
     ggaagaatcg tctaaaaagt atacagcttt ttcaagcacg gatggtcact atcaatttaa      4320
     acgattacct tttggattga acatttctcc aaatagtttt cagcgaatga tgaccatagc      4380
     catgacaggc ctcacgccgg aatgcgcttt tgtatatgtc gatgatattg tagtagtagg      4440
     agcttcagaa aatcaccatc taaagaattt agaaaaggtt tttgaaagac taagacacta      4500
     caatcttaaa ctaaacccag aaaaaagttg ctttttcaaa aaagaagtta cttatcttgg      4560
     acataagata accgacaaag gcatccttcc agatgattcc aaatacgaca gcataaaaaa      4620
     ttacccgata ccacaaaacg cagacgatgc gagaagatac gtagcattct gcaattatta      4680
     cagaaagttc atcccaaact ttgctttgaa agcaaaaccg cttaacagct tattaaagaa      4740
     aaatacaaaa tttgaatgga cacaagagtg tcaagaagca ttcgaatatt taaaaaacac      4800
     actgattagt ccacagatat tacaatatcc tgacttcagc aagcaattta tactaaccac      4860
     agatgcttca actatagcat gcggagcagt tttagcacag gaacatgatg gtatagatat      4920
     gccgatatgc ttcgcaagta gaaccttcac gaaaggggaa gcgaataaag caatcatcga      4980
     aaaggaacta gccgcaatac attgggctat aatgcatttc aagcattacc tatacggtac      5040
     aaagtttacc gtcaaaacgg accatagacc actagtctat ctgttcggaa tgaagaatcc      5100
     gtcatcaaag ttgacgagaa tgagactaga tttggaagag ttcgatttta cagttgaatt      5160
     tgtaaaaggg aaacagaacg ttgtagcaga cgctttatcg cgcatcaaga tcacctcaga      5220
     tgaaattaaa tccatcaatg tgattacgag aagcatgaac aaacctgtta cttccgataa      5280
     tgttttagga aacacgtcag agtctgatca actcaaaatg ttccatgcct tagcatacga      5340
     cgaagtaaaa gacttaccaa aactagaaac atcagtaaag agaaatgaaa acactatcga      5400
     gttgatagga aaaatcctaa acaaaagaaa gtccaaggag ctcttatcag taagagacat      5460
     ccatctgaat acagatatag gactacagga gcctttatta gtaaaggatt tccagaaaag      5520
     gaaggaaaaa tctgccatag tgcaatttat caaaaatata gaaaagaagc tcgtaatgaa      5580
     aagcattacc cagctagcag tctctgaaac agacgaaata ttcaaggagg taaatccgaa      5640
     tgaattcaag caaatcgcta acaatcacct gaaaaatatt cagatactaa tatatactaa      5700
     accacaaacg ataaatgacg aaaagacgat aaatgacata ctcgacaaag tgcacaacac      5760
     accgacagga ggacacattg gacagtatag aatgtataag aaaatcagaa aggaatatgt      5820
     atggaacaaa atgaagaaat caatcaaaga ttttctagac aaatgtataa cctgtaaact      5880
     aaataaacat cttatcaaga ctgtagaacc ttttgttaaa acagatacac ccaacattcc      5940
     attcgaagta gtatcaatcg atacagtagg accatttcaa aaaacaaata acaataatag      6000
     atatgcggta acacttcaat gtaatttaac gaaacacgtt acggttatag caattcctaa      6060
     caaagaagca aatacggtag ctagagcagt aatagaaaaa tttatgttaa tatatggcac      6120
     aaatattaaa gaattcagaa ccgatatggg tacagagtac aaaaatgaaa tatttaaaaa      6180
     tatatcagaa atccttcgaa tagaacacaa attttcaacg ccatatcatc cacaaacgat      6240
     aggagcttta gaacgtaatc acagatgtct aaacgaatac cttagaattt ttacaaacga      6300
     acacaaagat gattgggacg attggataaa ttattattca tttgcatata atacaacgcc      6360
     taatttagac cacggttaca caccatttga actagttttc ggaagaaacg agaaaatttc      6420
     gacaaatata acggaaaaat ctacaccatt atataattac gatgattact caaaagaatt      6480
     taaatacaga ttaaaactag ctcacgatag gactcgaaaa catatagaac aagaaaaaat      6540
     gaaactactg aaagagcaac aaaacataaa ccaagttaat tttcaaatag gagatcaaat      6600
     agcattgaca aatgagaaca gaacaaaact agatccggta tataaaggac cgtataaagt      6660
     aaaagagatt aacggaccta acatgataat tgaaaacact gatggtgtca cacagaatat      6720
     tcacaaaaat agagcaatta aaatatgaca gaataacttc atttcattac gttattcttc      6780
     cgaagggtgg agg                                                         6793
//
ID   Gypsy17-I_Dpse repbase;    DNA;    INV; 11390 BP.
XX
AC   Unknown_group_151;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy17_Dpse;
KW   Gypsy17-LTR_Dpse; Gypsy17-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-11390
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1104-1104 (2009).
XX
DR   Genome; Unknown_group_151; Positions   53483   42094.
XX
CC   Positions [5030-5503] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3266..5812
FT                 /product="Gypsy17-I_Dpse_2p"
FT                 /translation="MIRQGIIRKSNSPYCSPISIIPKKIDASGKQKYRMVV
FT                 DYRSLNEITVKDKFPTPRMDEILDKLGKCQYFTTIDLAKGFHQIPMEPSSI
FT                 PKTAFSTKHGHYEFTRMPFGLTTAPATFQRCMNNLLEELIFKDCFVYLDDI
FT                 IIFSTSLEEHLLSLRRVFGKLRDANLKLQMDKCEFMKKETEFLGQVVTTEG
FT                 IVPNPGKISAIVKFPIPETTKQIKSFLGLCGFYRKFIPNFANIAKPMTLKL
FT                 KKGAVIDPKEEKYVEAFERLKVLITSDPILAFPDFDKMFTVTTDASNIALG
FT                 AVLSQEHKPICYASRTLNEHEINYSAIEKELLAIVWATKYFRSYLFGRTFE
FT                 IQSDHKPLIWLNNLKEPNMKLQRWKIKLNEFDFKMKYLPGKENYVADALSR
FT                 VKINENLLGEASNSVGATVHSAQEDNLNHIAITDRPINYYNRQIELIKGNE
FT                 DKVETIRYFHKLIIKITYKEMTNTLAKYIIKEYLCTKKSALYFHNETDFPP
FT                 FQRAYLEIINSNNITKAIKSSTKLLDIQNYAEFKETILKNHKGLLHPGIEK
FT                 TVNWFRGKYYYPDYQKLIQNIINECPTCNIAKTEHRNTKLAFETTPEILNI
FT                 REKYVMDFYMVGNQQFLSCIDVYSKFATLVEVKSRDWLEAKRAIMKVFNEM
FT                 GKPIEIKADKDSAFMCTALQAWLNAENVKIEITSSKNGISDVERFHKTVNE
FT                 KLRIISSEDNTEDRFTKFELILYTYNHKTKHNTTNRTPADIFIYAGSPDYD
FT                 TQLNKVNKITQLNKNRIEYEVDTRYKLSPLVKSKVTNPFKRTGEIRQVDEK
FT                 HYEEKNRGRKITHYKSKFKKKKKSNRSKYNNSRETEEVNGIGELQHN"
FT   CDS           5787..7199
FT                 /product="Gypsy17-I_Dpse_4p"
FT                 /translation="MESANFNTIKILIFLIITIVMAQGQNIEINSIKSQNG
FT                 YMIFKTGSINIPINYEYHYLTVNVTKTEELYQNLLRQATKFQDIIQIKYLV
FT                 DKLQREMNGLKITKRNKRGLINIVGTAYKYLFGTLDQEDKVDLEQKIENLA
FT                 SHSIQMNELNLVIDAVNSGINVINKLNEEKDRNQQIEILIFNLQHFTEYIE
FT                 DIELGMQLTRLGIFNPKLLKQDYLEQINSEKILNIKTCTWLKSDTNEILII
FT                 SNIPKDITKVPIYKIVPYPDELNNMLTDMTYDKYYIKNEEVFVKETRLKTN
FT                 DNCIKGILMQTPTKCPYSKTFQNFQINFIEPNILITWNLPKTTLNQNCVNQ
FT                 EIIAEGNTIIKIYNCSIQLNEFTISNTMLDFAQNVYVNNNITKIKPLSYVQ
FT                 TNEIIMQYTTYSNLLQISLLISFVIIILVLLSYVAVKFTKTSKRVTVKCIN
FT                 PIIEAKEEPTSATALDTPSLYPRVIA"
FT   CDS           9131..10873
FT                 /product="Gypsy17-I_Dpse_3p"
FT                 /translation="MKENYIDSEIKDDNLTVHTINGPVRLTKSIMRNANKT
FT                 CPSEQKFYIHNFSENYDILLGREYLMASKAVIDYRNDTVTLGARSYPIIQS
FT                 GEAIEAGKTAQKCTDPSTKEEKIAPKCLDPSPEGDQYFASALDSELRECNQ
FT                 LRLEHLNDEEREELKKVLYEFKDVQYREGDNLTFTSTIKHEIKTQHEDPVY
FT                 RRPYKYAQIHDQEVNQQIKDMIRQGIIRKSNSPYCSPISMIPKKIDASGKQ
FT                 KYRMVVDYRSLNEITVKDKFPTPRMDEILDKLGKCQYFTTIDLAKGFHQIP
FT                 MEPSSIPKTAFSTKHGHYEFTRMPFGLTTAPATFQRCMNNLLKESIFKDCF
FT                 VYLDDIIIFSTSLEEHLLSLRRVFGKLRDANLKLQMDKCEFMKKETEFLGH
FT                 VVTTEGIVPNPGKISAIVKFPIPETTKQIKSFLGLCGFYRKFIPNFANIAK
FT                 PMTLKLKKGAVIDPKEEKYVEAFERLKVLITSDPILAFPDFDKMFTVTTDA
FT                 SNIALGAVLSQEHKPICYASRTLNEHEINYSAIEKELLAIVWATKYFRSYL
FT                 FGRTFEIQSHHKPLIWLNHLKEPNMKLQRWKKKI"
XX
SQ   Sequence 11390 BP; 4470 A; 2294 C; 1913 G; 2713 T; 0 other;
     aataaattct gagaaaatac taaatataaa aaacctccac atggctaaaa tccgatacca        60
     acgaaattct aataatttcc aacattccca aagacattac aaaagtacca atctataaaa       120
     tcgttccgta tccagacgaa ttaaataaca tgttaacaga tatgacatac gacaagtact       180
     acataaaaaa tgaagaagta tttgttaaag aaactagatt gaaaaccaat gacaattgta       240
     taaaaggaat tttaatgcaa actcccacta aatgtccata ttccaaaact tttcaaaact       300
     ttcaaataaa ctttattgaa cccaatatac taatcacatg gaatcttcca aaaacaactc       360
     taaaccagaa ttgtgtaaac caagaaatca tagcggaagg aaataccatt ataaaaatct       420
     acaactgttc aatccaatta aatgaattta caatatcaaa cacaatgtta gattttgccc       480
     agaatgttta tgtcaacaac aacataactt aaataaaacc actgtcgtat gtccaaacta       540
     atgaaataat tatgcaatac accaaatata gtaacctatt acaaataagt ctaatttcat       600
     ttgtcataat tatattagta caactaagtt atgtagctgt taaatttaga aacttctaaa       660
     agagtcacgg ttaaatgtat taacctataa tagaagccga agaggaaacc acctcagcca       720
     ccgcacttga aaccccctcc ctatacccga gggttatcgc ctagggacag gctaaataca       780
     aacgttgggg ggatggaata tccataattc cccacatccc atacacatta tgtttatgta       840
     caattcatcc accccatcca cacaagtaac aggaccccac tcaagaatca ataactgttt       900
     cttcccatac tccaagctag ggccccccat aatataaaca atggaccaca ttgtttcagc       960
     aacattagaa tcacgccact ctcgagaaat cgattcttta gaatcacgcc actcatgagg      1020
     accaatcaaa gctagacata aaaccaagga gtatcacatt cctagctccg tcatgtaatg      1080
     caacaccgat cgccagcagt ggatgccttt catcaaagcc gacgcatccc caaatatcga      1140
     tccaggcacg tacgccaccg acacgaagat gcagccgagg aaagcaacgc ccgaagccag      1200
     agtcgggagt tccaagagaa gggctcatgg aaactagcca gcagcagaga gatcagttcc      1260
     gtttgagaca agcagaccga aagtcaagtc ggggaattca ttcaaatctt gtgacataaa      1320
     gatatttaag ttgtaaaata aaagtctttg ttaaaaactt aaaatcgagt tgcggatatt      1380
     taactggcgc agtcggtagg atttcgttta aaattaacac ctatatttcg gtaatggtca      1440
     gcttgtgtaa tttataatta ctgtgatcac gtaatcccgg aattgttaat aaaattgtga      1500
     aatccgccaa agaacctatg tgctgcaagc acatacgatt tgcaaaacta atttaagtga      1560
     actgaagtaa gcggagatag tgaatcacca aggacagtga aacacttaat acaaaataaa      1620
     gttaaaaact acaacaaaac aaaacccaat caacaccaac aacatggcgt taccaccact      1680
     atcattgagc gaaatccact tgaaccaggc actgctgtcg atccgacaaa tacctgccta      1740
     tgacggttca tctggacagc taagctcatt tatcaaacga atcgaatatg tatgcggatt      1800
     atatccaact gaagatcttc gccaacaaag gatcctattt ggagcgaccg agatccaact      1860
     gtcaggagag gcacaacgca tatcgcaaat gatacaaccc aacacgtggc tcgaactgaa      1920
     gacggcgctg atcaacgagt tcaaaaatca cacaccatat gaagaactct tacgacaact      1980
     atacaccacc agattcaacg gcagtcttcg taagtttata gaagaattag agataaaagc      2040
     attattaata aacaataagc taaacttaga aaacatacca gaaaataatg tcatttataa      2100
     aaacgctttg aacaacacaa ttaaagatgt cattactcga aaacttcctg acagaatgtt      2160
     catgacctta gcaagaaaag atattaccac attgtctaat cttaagaagg cagcacaaga      2220
     agaaggattg tacgaatcta gtacaacaga tgcaggtaca aataaagatc aatcgaaatc      2280
     gtctcaatca aatcgaaaga atgttggaaa ctattatcca aattataata ctactaacta      2340
     tcacaatcaa actcagagtt catctggaac aggtcagacg aatcgaacaa atcaaaatca      2400
     aaattcccaa aatcctggat tatacaatga gttcaaaatt tccttgaatc aagggagggc      2460
     tcagaatcca ttcaatcagc aaatatttca aaaccaagct agtgggagtg gacccaacca      2520
     acctactaaa agagggaggg agagccagag tggccaaacg aagatggacg taaattttca      2580
     tcaagccgcc tcggaagaaa ccgaggagga ccctatataa acattaccat taataaaaga      2640
     atattaaggt gtatcgctga ctcgggatca tcgatcaaca tcatgaaaga aaattacaca      2700
     gattccgaga taaaagacga taaccttacg gtccatacca tcaatggacc tgtccgttta      2760
     actaagagta taatgaggaa tgcgaacaaa acatgtccgt ccgaacaaaa gttctacata      2820
     cataactttt ccgaaaatta tgatatttta ttaggaagag aatacttgat ggcaagtaaa      2880
     gccgtcatcg attacagaaa tgacactgta acactaggag ctaggtcaac ccaagtgcac      2940
     tgatccctct acaaaagaag agaagatcgc acctaagtgc cttgacccat ctccagaggg      3000
     agatcaatac ttcgcttccg ctctagacag tgaattaagg gaatgtaatc aattaagatt      3060
     ggaacactta aacgacgaag agagggaaga gttaaagaag gtcttatatg agtttaagga      3120
     tgtgcagtac agagaaggtg acaatttgac tttcacaagt acaatcaagc acgagatcaa      3180
     aactcaacat gaagacccgg tctacagacg accatacaaa tatgcccaga tacatgatca      3240
     ggaggtaaac cagcaaatca aagatatgat caggcaggga ataattcgaa agtcgaattc      3300
     tccttactgc tcgcccatat ctattattcc gaagaagata gatgcttcag gaaagcaaaa      3360
     atatcgaatg gtagtagact atagaagtct aaatgaaata acagttaagg acaaattccc      3420
     aactccaaga atggatgaaa tcctagacaa actaggtaaa tgtcagtatt ttacgacaat      3480
     cgatttagca aaaggtttcc atcaaatacc catggaacct agctcaatcc ccaaaactgc      3540
     gttctccact aagcatggac attacgagtt cactcgtatg ccctttgggc taaccactgc      3600
     cccagctacc ttccaaagat gtatgaacaa tctgctagaa gagttaatct tcaaagattg      3660
     ctttgtatac ttagatgaca tcattatatt ttccacttca ttggaagaac acttgttgtc      3720
     actaaggaga gtatttggaa agttgagaga cgccaacttg aagctacaaa tggataaatg      3780
     tgaattcatg aaaaaggaaa ctgaattcct aggtcaagta gtcactactg aaggaatagt      3840
     accaaatcca ggcaaaatct ctgccattgt caaatttcca ataccagaaa cgactaaaca      3900
     aataaagtca ttcttaggtc tgtgcgggtt ctacaggaaa ttcattccta attttgcaaa      3960
     catagcaaaa cccatgacac tcaaactaaa gaaaggagct gtcatagacc ccaaggaaga      4020
     aaagtacgtc gaggcatttg agagactaaa agtactcatc acctcagacc ctatccttgc      4080
     gttcccagac tttgacaaaa tgttcacggt aacaaccgac gctagtaaca tagcattggg      4140
     agcggttttg tcacaagaac acaaaccgat ctgctacgct agcagaaccc taaatgaaca      4200
     tgaaataaac tattcagcca tcgaaaagga attattagcg atcgtatggg caaccaagta      4260
     tttccgttca tacctgttcg gtagaacatt cgagatacaa agcgatcata aacccttgat      4320
     ttggttgaac aacctcaagg agccaaatat gaaattacaa aggtggaaaa taaaactgaa      4380
     tgagtttgat tttaaaatga aatatctacc aggcaaagaa aattatgtag ctgatgcctt      4440
     atcaagggta aagattaatg aaaatctcct tggagaagct tccaatagcg ttggtgcaac      4500
     tgtacatagc gcacaggaag acaatctaaa tcacattgct atcacggata gaccaattaa      4560
     ctattacaat cggcaaattg agctaataaa aggcaatgaa gataaggtag aaacaattcg      4620
     ttattttcac aagctaatca tcaagatcac gtataaggaa atgactaaca ccttagcgaa      4680
     gtatataata aaggaatatc tatgcaccaa aaagagcgca ttatatttcc ataacgaaac      4740
     agattttccg ccattccaaa gagcctattt agaaatcatt aattctaaca atataaccaa      4800
     agctattaaa tcaagcacga aactcctaga tattcagaat tacgctgaat ttaaagaaac      4860
     catattaaag aatcataaag gcttactcca tccagggata gagaaaaccg tcaattggtt      4920
     taggggaaaa tactattacc cggattatca aaaactaatc caaaacatca taaacgaatg      4980
     tcctacttgt aatattgcca aaacagagca tagaaatacg aagttggcat tcgaaactac      5040
     accggaaata ctgaacatca gagagaaata cgtcatggat ttctatatgg ttggtaacca      5100
     acagttccta tcatgtattg acgtatactc gaagtttgcc actcttgtag aagtaaaaag      5160
     tcgtgactgg ttagaagcaa aaagagccat catgaaagtt tttaacgaga tgggcaaacc      5220
     aattgaaatc aaagccgata aagattcagc ttttatgtgc acagcattgc aagcatggct      5280
     gaatgcggaa aacgtcaaaa tagagatcac ttccagcaaa aatggaatat ctgacgtaga      5340
     aagatttcat aaaacagtaa atgaaaaatt aagaataata tctagcgagg ataacacaga      5400
     agatagattc acgaagtttg aattaattct ttatacttat aatcataaaa ccaaacataa      5460
     taccacaaat aggacaccag ctgatatatt catttatgca ggctcacctg attatgacac      5520
     acaactaaat aaagtgaata aaatcactca attaaataaa aaccgcatag agtatgaagt      5580
     agatacccgc tataaactat cacctctagt taagtctaag gtaacaaatc ctttcaaaag      5640
     gacgggtgaa attagacagg tagacgaaaa acattatgaa gaaaagaata ggggtaggaa      5700
     aataactcat tataaatcaa aattcaagaa aaagaagaaa tctaatagaa gcaaatataa      5760
     taattccaga gaaaccgagg aagttaatgg aatcggcgaa cttcaacaca attaaaatcc      5820
     tcatcttcct cataattacc atcgtaatgg cacagggcca aaacatagaa ataaattcta      5880
     taaaatccca aaacggatat atgatattca aaactggatc gatcaacata cctatcaatt      5940
     acgaatacca ttatctaact gttaatgtaa ctaaaaccga agaactatac caaaatttgt      6000
     taaggcaagc cactaaattc caggacataa tccaaataaa atatctagta gacaaattgc      6060
     aaagagaaat gaacgggcta aaaataacca aaagaaataa aagaggccta atcaatatag      6120
     taggaacagc ctacaaatat ctctttggaa cactagatca ggaagataaa gtcgatttgg      6180
     aacaaaaaat agaaaattta gccagccata gcattcaaat gaatgaacta aatttggtaa      6240
     tagatgcagt taatagcgga ataaacgtta taaacaaact aaatgaagaa aaagacagga      6300
     atcaacaaat agaaattttg atattcaatc tacaacattt cacagaatat atcgaagata      6360
     tagaactagg tatgcaatta actaggctcg gtatatttaa tccaaaatta ttaaaacaag      6420
     actacctgga acaaataaat tctgagaaaa tactaaatat aaaaacctgc acatggctaa      6480
     aatccgatac caacgaaatt ctaataattt ccaacattcc caaagacatt acaaaagtac      6540
     caatctataa aatcgttccg tatccagacg aattaaataa catgttaaca gatatgacat      6600
     acgacaagta ctacataaaa aatgaagaag tatttgttaa agaaactaga ttgaaaacca      6660
     atgacaattg tataaaagga attttaatgc aaactcccac caaatgtcca tattccaaaa      6720
     catttcaaaa ctttcaaata aactttattg aacccaatat actaatcacg tggaatcttc      6780
     caaaaacaac gctaaatcag aattgtgtaa accaagaaat catagcggaa ggaaatacca      6840
     ttataaaaat ctacaactgt tcaatccaat taaatgaatt tacaatatca aacacaatgt      6900
     tagattttgc ccagaatgtt tatgtcaaca acaacataac taaaataaaa ccactgtcgt      6960
     atgtccaaac taatgaaata attatgcaat acaccacata tagtaaccta ttacaaataa      7020
     gtctactaat ttcatttgtc ataattatat tagtactact aagttatgta gctgttaaat      7080
     ttacgaaaac ttctaaaaga gtcacggtta aatgtataaa ccctataata gaagcaaaag      7140
     aggaaccaac ctcagccacc gcacttgaca ccccgtcact atacccgagg gtaatcgcct      7200
     agggacaggc taataacaaa cgttggggga gttacatatc cataattccc cacatcccat      7260
     acacattacg tttatgtaca attcatccac cccatccaca caagtaacag gaccccactc      7320
     aagaatcaat aactgtttct ttccatactc caagctaggg ccccccataa tataaacaat      7380
     ggaccccatt ggaccccaat cgagaaatcg attctttaga atcacgccac tcatgaggac      7440
     caatcaaacc tagacataaa accaaggagt atcacattcc tagctccgtc atgtaatgca      7500
     acaccgatcg ccagcagtgg atgcctttca tcaaatccga cgcatcccca aatatcgatc      7560
     caggcacgta cgccaccgac acgaagatgc agccgaggaa agcaacgccc gaagccagag      7620
     tcgggagttc caagagaagg gctcatggaa actagccagc agcagagaga tcagttccct      7680
     ttgagacaag cagacccaca gtcaagtcgg ggaattcatt taaatcttgt gacataaaga      7740
     tatttaagtt tgtaaaataa aagtattttt ttaaaaactt aaaatcgagt tgcggataat      7800
     gaactggcgc agtcggtagg atttcgttta aaattaacac ctatatttcg gtaatggtca      7860
     gcttgtgtaa tttataatta ctgtgatcac gtaatcccgg aattgttaat aaaattgtga      7920
     aatccgccaa agaacctatg tgctgcaagc acatacgatt tgcaaaacta atttaagtga      7980
     actgaagtaa gcggagatag tgaatcacca aggacagtga aacacttaat acaaaatcaa      8040
     aaaaaactta caagtgaacc aaaataaagt taaaaactac aacaaaacaa aacccaatca      8100
     acaccaacaa catggcgtta ccaccactat cattgagcga aatccacttg aaccaggcac      8160
     tgctgtcgat ccgacaaata cctgcctatg acggttcatc tggacagcta agctcattta      8220
     tcaaacgaat cgaatatgta tgcggattat atccaactga agatcttcgc caacaaagga      8280
     tcctttttgg agcgaccgag atccaactgt caggagaggc acaacgcata tcgcaaatga      8340
     tacaacccaa cacgtggctc gaactgaaga cggcgctgat caacgagttc aaaaatcaca      8400
     caccatatga agaactctta cgacaactat acaccaccag attcaacggc agtcttcgta      8460
     agtttataga agaattagag ataaaagcat tattaataaa caataagcta aacttagaaa      8520
     acataccaga aaataatgtc atttataaaa acgctttgaa caacacaatt aaagatgtca      8580
     ttactcgaaa acttcctgac agaatgttca tgaccttagc aagaaaagat attaccacat      8640
     tgtctaatct taagaaggca gcacaagaag aaggattgta cgaatctagt acaacagatt      8700
     caggtacaaa taaagatcaa tcgaaatcgt ctcaatcaaa tcgaaagaat gttggaaact      8760
     attatccaaa ttataatact actaactatc acaatcaaac tcagagttca tctggaacag      8820
     gtcagacgaa tcgaacaaat caaaatcaaa attcccaaaa tcctggatta tacaatgagt      8880
     tcaaaaattc cttgaatcaa gggagggctc agaatccatt caatcagcaa atatttcaaa      8940
     accaagctag tgggagtgga cccaaccaac ctactaaaag agggagggag agccagagtg      9000
     gccaaacgaa gatggacgta aattttcatc aagccgcctc ggaagaaacc gaggaggacc      9060
     ctatataaac attaccatta ataaaagaat attaaggtgt atcgctgact cgggatcatc      9120
     gatcaacatc atgaaagaaa attatataga ttccgagata aaagacgata accttacggt      9180
     ccataccatc aatggacctg tccgtttaac taagagtata atgaggaatg cgaacaaaac      9240
     atgtccgtcc gaacaaaagt tctacataca taacttttcc gaaaattatg atattttatt      9300
     aggaagagaa tacttgatgg caagtaaagc cgtcatcgat tacagaaatg acactgtaac      9360
     actaggagct aggtcgtacc caatcattca gagtggagaa gctattgaag ccggcaagac      9420
     cgcacagaag tgcactgatc cctctacaaa agaagagaag atcgcaccta agtgccttga      9480
     cccatctcca gagggagatc aatacttcgc ttccgcgcta gacagtgaat taagggaatg      9540
     taatcaatta agattggaac acttaaacga cgaagagagg gaagagttaa agaaggtctt      9600
     atatgagttt aaggatgtgc agtacagaga aggtgacaat ttgactttca caagtacaat      9660
     caagcacgag atcaaaactc aacatgaaga cccggtctac agacgaccat acaaatatgc      9720
     ccagatacat gatcaggagg taaaccagca aatcaaagat atgatcaggc agggaataat      9780
     tcgaaagtcg aattctcctt actgctcgcc catatctatg attccgaaga agatagatgc      9840
     ttcaggaaag caaaaatatc gaatggtagt agactataga agtctaaatg aaataacagt      9900
     taaggacaaa ttcccaactc caagaatgga tgaaatccta gacaaactag gtaaatgtca      9960
     gtattttacg acaatcgatt tagcaaaagg tttccatcaa atacccatgg aacctagctc     10020
     aatccccaaa actgcgttct ccactaagca tggacattac gagttcactc gtatgccctt     10080
     tgggctaacc actgccccag ctaccttcca aagatgtatg aacaatctgc taaaagagtc     10140
     aatcttcaaa gattgctttg tatacttaga tgacatcatt atattttcca cttcattgga     10200
     agaacacttg ttgtcactaa ggagagtatt tggaaagttg agagacgcca acttgaagct     10260
     acaaatggat aaatgtgaat tcatgaaaaa ggaaactgaa ttcctaggtc atgtagtcac     10320
     tactgaagga atagtaccaa atccaggcaa aatctctgcc attgtcaaat ttccaatacc     10380
     agaaacgact aaacaaataa agtcattctt aggtctgtgc gggttctaca ggaaattcat     10440
     tcctaatttt gcaaacatag caaaacccat gacactcaaa ctaaagaaag gagctgtcat     10500
     agaccccaag gaagaaaagt acgtcgaggc atttgagaga ctaaaagtac tcatcacctc     10560
     agaccctatc cttgccttcc cagactttga caaaatgttc acggtaacaa ccgacgctag     10620
     taacatagca ttgggagcgg ttttgtcaca agaacacaaa ccgatctgct acgctagcag     10680
     aaccctaaat gaacatgaaa taaactattc agccatcgaa aaggaattat tagcgatcgt     10740
     atgggcaacc aagtatttcc gttcatacct attcggcaga acattcgaga tacaaagcca     10800
     tcataaaccc ttgatttggt tgaaccacct caaggagcca aatatgaaat tacaaagatg     10860
     gaaaaaaaaa atttaatgag ttcgacttta aaataaaata tctaccaggc aaagaaaatc     10920
     atgtagcgga tgccttatca agggtaaaga ttaatgaaaa tctccttgga gaagcttcca     10980
     aaagcgttgg tgcaactgta catagcgcac aggaagacaa tctaaatcac attgccatca     11040
     cggaaagacc aattaactat tacaatcggc taattgagtt aataagaggc aatgaagata     11100
     aggtagaaac aaatcgctat ttccacaagc taatcatcaa ggtcacatat aagcaaatga     11160
     ctaacacctt agcgaaggat ataataaggg aatatctgtg caccaaaaag aatgcattat     11220
     atttccataa cgaaatagat tttcctccat tccaaaaggc ctatttagaa atcattaatt     11280
     ctaacaatat aaccaaagct attaaatcaa gcaccaaact tataaatatt caaaattact     11340
     ctgaatttaa agaaaccata ttaaagaaat actgaataca ccggaaatac                11390
//
ID   Gypsy17-I_Dya repbase;    DNA;    INV; 4207 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy17_Dya;
KW   Gypsy17-LTR_Dya; Gypsy17-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4207
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1105-1105 (2009).
XX
DR   Genome; chrU; Positions 6462571 6458365.
XX
CC   Positions [3186-3656] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2640..4193
FT                 /product="Gypsy17-I_Dya_3p"
FT                 /translation="MTSNRLQRWAIILMAYQYDIKYRSTTAHGNADALSRL
FT                 PVNSDDKFDQEEACYNIVEVSCPINVDVVKRNIEHDYILKEVYKYVYNGWP
FT                 EQVERELMPYFNRRFAFTFNSSLLCLHSEVNRVIIPSKLRKTILNFLHDGH
FT                 WGIVRMKQLARQHVWWPGIDEDINQLAKDCNICKVANPAPAKEFFSWPNTT
FT                 SAWERIHIDFAGPIFNSMWLICVDAYSQFPFITQMSSTTTENTISALTTIF
FT                 AIEGYPKTLVSDNGPQLTAESFKVFCKNFGINHITTAPFHPASNGLAERFV
FT                 QSFKTAVGKNIRDGLSVRAAVTKYLSSYRFTPNAEGKSPAELLHGRPVRTI
FT                 LSQLLEKKSDSKPLASTKYFPSQKVFARNYARGEKWIEAVIDRPVGHMLFI
FT                 LRTKTGVIKRHINQIKPRFGPDAIKDSKEENTTYWWAPDLPNQPTTQLEAQ
FT                 SAATQQEDPISEPSQDVQPSRVSEESQPNVQKNPQPRRSGIPIRRSSRTRQ
FT                 EVNRYQTTNFRKRHTNKKMPLN"
FT   CDS           join(73..1083,1087..2580)
FT                 /product="Gypsy17-I_Dya_1p"
FT                 /translation="MENQSNLQELLAQQQQLLQQQQQWMQAFLERERNFPV
FT                 AGEQIVVCPPFPSFSKDSQNWETYLQQLTQHFKAYSVLAEEKKKAYFLSWV
FT                 GTHVFELVKNLFGSENPNTHTYVQITEKLTEHFKQKRHVVAARYEFFKRQM
FT                 RDSQTHKEWVADLRGIARECQFVCQSEGCTLNYVNEMIRDQIIVHTPYDAI
FT                 RTAALQKLQPSLEDVISIAETYEATMKTVAVIKESDKKSVDMNAVYVHKNN
FT                 HKHRNSGDGKGGKIALKSCSGCGNSHMREKCKFRDAICHTCGRKGHIAVVC
FT                 MSKQCKMKMENSDKKNQNKNTDTIQTVYTVEKLARFEINKTMIDVILNTIV
FT                 PFQMDSGATVSVMNLQTYRQVGSPKLAKCIRILHAFGQSEIPVLGELHTEA
FT                 KCGNKSANVTIIVANVENSNNLFGLDLFKTFNFEIQQISNVSEAQLSQMTD
FT                 LCTKYKEVFEPAIGTIKNFKASIYLKPNSLPKFYKSRQIPFAQMDKFKEEA
FT                 QRLTNAGIWKPIKFSNWALAPKPGGALRICGDFKQGVNSQLDIEQYPLPTR
FT                 ETLFHAIRHGKHFSKIDLKDAYLQMELDDATKKIMVVNTPLGLFQYQRLPY
FT                 GIASAPAIFQRYLEQLLNGIEGCGNYLDDIIISAPTTEQHLARLERILGIL
FT                 QENGIKCKKEKCFFLKEEIEYLGRRVSSKGILPDTSGLEAVKELKPPTNLQ
FT                 QLDAFMGKVNYYCNFIPNYSQVAAPLNQLRRKNTLFKFGTDQQRAFTALKT
FT                 HILNATELVHFNEDLPLVLATDASSFGIGVVLSHLHPGNREKPIAFASKTL
FT                 DVHQVRYSQIEKEALSIIFGVQKFHQYTVENLS"
XX
SQ   Sequence 4207 BP; 1431 A; 899 C; 844 G; 1033 T; 0 other;
     attattggcg acgagtaaaa aaaacagaaa ttcgtgtcgg tagtctattg caagagatcg        60
     aacgaaaaaa caatggagaa tcaaagtaat ttacaagagt tgttggctca acagcaacaa       120
     ttacttcagc agcaacaaca atggatgcaa gcatttcttg aacgggaacg taactttccc       180
     gtagcaggag aacaaatcgt tgtgtgtccg ccgttcccaa gttttagtaa ggatagccaa       240
     aattgggaga cgtatttaca acagctaacg caacatttta aagcgtactc agttctagcc       300
     gaagagaaga aaaaagccta ttttctttct tgggtaggta cacatgtttt cgaactagtg       360
     aaaaatctat tcgggagtga aaatccgaac acacacacat atgtacaaat caccgaaaag       420
     ttaacggagc acttcaagca aaaacggcat gttgtcgctg ctcgttatga atttttcaaa       480
     cggcaaatgc gggactcaca aacacacaag gagtgggtag ctgatctacg tggcatagct       540
     cgcgaatgcc aatttgtatg ccaatcagaa gggtgtacat taaactatgt aaatgagatg       600
     atccgcgatc aaataatagt gcatacgcca tacgacgcaa ttcgcacagc agctttgcaa       660
     aagcttcagc catcgctaga agatgtaatt tctattgccg aaacatacga ggcaacaatg       720
     aaaacagtag ctgttatcaa ggaaagtgac aagaaatcag tagacatgaa cgcagtttac       780
     gtacacaaaa acaatcacaa acaccgtaac agtggggatg gaaaaggagg caagatcgcg       840
     ctcaaatctt gctccggctg tggaaactca cacatgcgcg aaaaatgtaa atttcgtgat       900
     gccatttgcc atacatgtgg aagaaaggga cacatagctg ttgtatgcat gtcaaaacag       960
     tgcaaaatga agatggaaaa tagtgacaaa aagaaccaaa acaaaaacac cgatactatc      1020
     caaacggtat acactgtgga aaaattagct aggtttgaaa tcaataaaac catgattgat      1080
     gtttaaattc taaatacaat cgttccgttt caaatggatt caggtgcaac tgtgtcggtg      1140
     atgaatttgc aaacataccg ccaagttggc agccctaaat tagcaaaatg tattcgtatt      1200
     ttgcatgcgt ttggccaaag cgaaattcca gttttgggtg aactgcacac tgaggcaaag      1260
     tgtggcaaca aatcagcaaa cgtaacgatc atcgtggcaa acgtggaaaa ttcaaacaat      1320
     ctttttggtt tggatttgtt caaaacattc aatttcgaaa ttcagcaaat ttcaaatgta      1380
     agcgaagcac agctgtctca aatgactgac ctttgcacca aatataagga agtatttgaa      1440
     cctgctatcg gaactataaa aaactttaag gcaagcatat acttaaagcc aaattcgctt      1500
     ccaaaattct acaaaagccg acagattccg tttgcacaaa tggacaaatt taaagaggaa      1560
     gcgcagcgtc tcacaaatgc aggtatttgg aaacccatta aattcagcaa ttgggcacta      1620
     gcacccaagc cgggtggagc actacgtatt tgtggcgact ttaaacaagg tgtcaattcc      1680
     caattggaca tcgagcaata cccattgcca acgcgagaaa ctctatttca tgccattcgc      1740
     catggaaaac atttttccaa aatcgatctg aaggacgcat acctacaaat ggaactagat      1800
     gatgcaacga agaaaattat ggttgtcaac acgccgttag gacttttcca gtaccaacgt      1860
     ttaccgtatg gaatagccag cgctccagct atattccaac ggtatctcga gcaacttcta      1920
     aatggcatag aaggttgtgg gaattacctc gacgacataa ttatctcagc gcctacgact      1980
     gagcaacacc ttgctcgcct tgaaagaatt ttaggtattc tacaagagaa tggtataaaa      2040
     tgtaagaaag aaaaatgttt cttcctcaaa gaagaaatcg aatatttggg gagaagagtg      2100
     agcagtaagg gcatccttcc ggatacctca ggactagaag ctgtcaagga attgaagccg      2160
     cccactaatc tacaacagtt agatgcgttt atgggtaaag taaactatta ttgcaatttt      2220
     atcccaaatt attcacaagt agcagctccg ctgaatcagc tgcgcagaaa aaacacacta      2280
     ttcaagtttg gaacagacca gcaacgggca ttcacagcac ttaaaacaca tattttaaac      2340
     gctacagagc tagtacattt taacgaggac cttccgctcg ttttagctac cgacgcttct      2400
     tcattcggta taggagtcgt gttgtcacac ctgcatccgg gtaacagaga aaagccaatc      2460
     gcttttgcat ctaaaactct agatgtgcac caagtcaggt acagccaaat agaaaaggaa      2520
     gcactttcta ttatatttgg agtacaaaag tttcatcagt atacggtaga aaatttatcc      2580
     taatcactga tcataagcct ttagttacga tattttcacc aagcaagcat ctaccaacga      2640
     tgacttcaaa ccgactccag cgctgggcta taattctgat ggcctatcag tacgatataa      2700
     aatatcgttc gacaaccgca catggaaatg cagacgcact ctcacgtctt ccagtcaact      2760
     ctgatgataa atttgatcag gaggaggcat gctataacat agtcgaagta tcttgcccga      2820
     taaatgtcga tgtagtcaag cgaaacattg aacacgatta tattctaaag gaagtttata      2880
     aatacgttta caatggctgg cctgaacagg tagaaagaga attaatgcca tattttaacc      2940
     gaagatttgc cttcacgttc aacagcagcc ttctttgcct tcattctgaa gtaaaccgag      3000
     ttattattcc aagcaagcta cgtaaaacga ttcttaattt cctacacgat ggtcattggg      3060
     gaatcgtacg tatgaaacaa ctagcacgtc aacatgtgtg gtggccaggg atcgacgagg      3120
     atatcaacca attagcaaaa gattgtaaca tctgcaaagt ggctaatcca gctcctgcaa      3180
     aagagttttt tagctggcca aacactacat ccgcctggga aagaatacat atcgactttg      3240
     cgggtccgat ttttaattca atgtggttaa tttgcgttga cgcttactct cagttcccat      3300
     ttataacgca aatgtcgtcc accacaacag aaaatactat ttcagcactc acaacaatat      3360
     ttgccatcga aggttatccg aaaaccttag ttagcgataa tggtccccag ctaacagcag      3420
     aaagtttcaa ggtattttgc aagaactttg gaataaacca catcaccact gcaccatttc      3480
     atccagcatc aaatggtctt gctgagcgat tcgtacaatc attcaaaaca gcagtgggca      3540
     aaaatatcag agatgggtta tctgtcagag cagccgttac gaaatattta agttcgtatc      3600
     gttttacacc aaatgcagaa ggtaaatctc cagcagaact tctacacggt cgcccagttc      3660
     gcactatttt aagccaacta ttagagaaga aatctgatag taagccacta gcatctacga      3720
     agtattttcc aagccagaaa gtatttgctc gaaactacgc aagaggggaa aagtggatag      3780
     aagctgtcat cgaccggcct gtaggacata tgctattcat ccttcgtacc aaaacaggtg      3840
     tcatcaagcg tcacatcaat caaatcaagc caagatttgg tccagatgcc atcaaggatt      3900
     ctaaggaaga aaacactaca tattggtggg cacctgatct cccaaatcag cccacaactc      3960
     agctggaagc tcagtcagcg gctacacaac aagaagatcc gatatccgaa ccgtcacagg      4020
     atgttcagcc aagccgagtt tctgaagagt cacagcccaa cgttcagaag aatcctcagc      4080
     ctcgccgttc aggtattccg attcgtagaa gctctcggac acgccaagaa gtcaaccgct      4140
     atcagaccac gaacttcagg aagcgccata ctaacaaaaa aatgccatta aattaagggg      4200
     agagatg                                                                4207
//
ID   GYPSY17-LTR_AG repbase;    DNA;    INV; 869 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY17-LTR_AG is an LTR of retrotransposon GYPSY17_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY17_AG; GYPSY17-I_AG; GYPSY17-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-869
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY17_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 176-176 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY17-LTR_AG is a long terminal repeat of GYPSY17_AG
CC   (its internal portion is deposited as GYPSY17-I_AG).
XX
SQ   Sequence 869 BP; 261 A; 232 C; 170 G; 206 T; 0 other;
     tgtagcagat ttactgctaa cagtaggtca catctaactt agcattgcca aaagccaggt        60
     aaaaagacgt taaccaccag aagcgcaagc gcatagccag aagccaggta aagaaacgtt       120
     aaacaccaga agcgtaaacg ttctcgtgtt ttaccccaga acataaataa ggaaaacgcg       180
     ccacagataa gcaattaaac ttccgtaaaa cccaggcata aacaggaaaa cgttcgctac       240
     atccacaatg cacggatagt tgataaaaca caggcacgct aggtataatt taagaaacac       300
     ctgtaaaaac ccaaacccgg aaaaccaaat gaaagctcac atttgacaaa catctggttg       360
     ccaaatgtgt cacaactttc acaccatctt tcttataaat aaagctcgaa ttgatggcga       420
     agtcagttca ccttccatag acacgtagat cactcgtgtt ctggtgcatc tcaccaattt       480
     gcagattccg ccgaaggctc tgctcatatt tgataatcat ttttggttat cagctgttca       540
     gtcggttgac cgatcagcat taccctcatc gaaataaagt gcacgtttgc actagttcca       600
     cccaacttct cccacggtgt ccgattccgc ctcggtcatc aactcgacgc gcaaggtcga       660
     tccagtccgc gattccgccg acgtaagcaa gtgcttcttt tcggacttag cgtaagtgtg       720
     aacaggttga cgtaaccgat acgcgacgaa tgtgtttaca ttttggtgtc gcgttccgta       780
     cgatcccctt cctcgtccca caccctttca ctgtgctccg cgcattgact caccgaaacg       840
     gtttgagaag cgcggccgaa cctaccaca                                         869
//
ID   Gypsy17-LTR_Dpse repbase;    DNA;    INV; 1367 BP.
XX
AC   Unknown_group_151;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy17_Dpse;
KW   Gypsy17-I_Dpse; Gypsy17-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1367
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1106-1106 (2009).
XX
DR   Genome; Unknown_group_151; Positions   42093   40727.
XX
SQ   Sequence 1367 BP; 600 A; 216 C; 219 G; 332 T; 0 other;
     tgaagatcag agagaaatac gtcatagatt tctatatggt tggtaaccaa cagttcctat        60
     catgtattga cgtatactcg aagtttgcca ctcttgtaga agtaaaaagt cgtgactggt       120
     tagaagcaaa aagagccatc atgaaagttt ttaacgagat gggcaaacca attgaaatca       180
     aagccgataa agattcagct tttatgtgca cagcattgca agcatggctg aatgcggaaa       240
     acgtcaaaat agagatcact tccagcaaaa atggaatatc tgacgtagaa agatttcata       300
     aaacagtaaa tgaaaaatta agaataatat ctagcgagga taacacagaa gatagattca       360
     cgaagtttga attaattctt tatacttata atcataaaac caaacataat acaacaaata       420
     ggacaccagc tgatatattc atttatgcag gctcacctga ttatgataca caactaaata       480
     aagtgaataa aatcactcaa ttaaataaaa accgcataga gtatgaagta gatacccgct       540
     ataaactatc acctctagtt aagtctaagg taacaaatcc tttcaaaagg acgggtgaaa       600
     ttagacaggt agacgaaaaa cattatgaag aaaagaatag gggtaggaaa ataactcatt       660
     ataaatcaaa attcaagaaa aagaagaaat ctaatagaag caaatataat aattccagag       720
     aaaccgagga agttaatgga atcggcgaac ttcaacacaa ttaaaatcct catcttcctc       780
     ataattacca tcgtaatggc acagggccaa aacatagaaa taaattctat aaaatcccaa       840
     aacggatata tgatattcaa aactggatcg atcaacatac ctatcaatta cgaataccat       900
     tatctaactg ttaatgtaac taaaaccgaa gaactgtacc aaaatttgtt aaggcaagcc       960
     actaaattcc aggacataat ccaaataaaa tatctagtag acaaattgca aagagaaatg      1020
     aacgggctaa aaataaccaa aagaaataaa agaggcctaa tcaatatagt aggaacagcc      1080
     tacaaatatc tctttggaac actagatcag gaagataaag tcgatttgga acaaaaaata      1140
     gaaaatttag ccagccatag cattcaaatg aatgaactaa atttggtaat agatgcagtt      1200
     aatagcggaa taaacgttat aaacaaacta aatgaagaaa aagacaggaa tcaacaaata      1260
     gaaattttga tattcaatct acaacatttc acagaatata tcgaagatat agaactaggt      1320
     atgcaattaa ctaggctcgg tatatttaat ccaaaattat taaaaca                    1367
//
ID   Gypsy17-LTR_Dya repbase;    DNA;    INV; 199 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy17_Dya;
KW   Gypsy17-I_Dya; Gypsy17-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-199
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1107-1107 (2009).
XX
DR   Genome; chrU; Positions 6458364 6458166.
XX
SQ   Sequence 199 BP; 74 A; 47 C; 19 G; 59 T; 0 other;
     tgttatatat gttaattcaa atatacatct caccactctg ttgaaattac tctacttatc        60
     ctcttaatat ctacgatata caacactaac cctagtatac caaaaatcat tcctgatcag       120
     caaagcaaaa taaaaaagtc agttgttgtc tcaccctaaa gcagaacgcg tcgtttctaa       180
     tatgcacaca tacacaaca                                                    199
//
ID   Gypsy18-I_Dpse repbase;    DNA;    INV; 7727 BP.
XX
AC   Unknown_group_563;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy18_Dpse;
KW   Gypsy18-LTR_Dpse; Gypsy18-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-7727
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1108-1108 (2009).
XX
DR   Genome; Unknown_group_563; Positions   99039  106765.
XX
CC   Positions [3296-3838] - Reverse transcriptase
CC   Positions [4853-5329] - Integrase core
CC   LTRs are 79% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2156..5395
FT                 /product="Gypsy18-I_Dpse_2p"
FT                 /translation="MASQSQLDEESIIEYIIEGIPDSKQNKSCLYQANNFK
FT                 DFREQIKIYEKISANQGSTLKANPKFENSSVKIKDERRCFKCGGSNHIAKY
FT                 CKESAVKCFNCNQLGHKANQCEAKGSRMATEKKISNVQQFSQTSFNRAFKN
FT                 VEIGNEDISALFDSGSDICTMSEKVYRKIFPVALKNDIKELIGIGGKKIYT
FT                 LGSFNVVTKLDDVPLEMCFHVVRDDDTLYEGVIGSDVLDFVSASIGKKGVF
FT                 FHSINDIRQGEVEVPPEKEYVSSSFTKGSRNLEFIKYSDTQVSRPPDSGSA
FT                 IDELEKTFHQILSSNIIEEFSRGIDLSHLNREVRSIIAELVENYKPLKPEN
FT                 SPVEMKIILSDEVPVHQRPRRLPYVDNEKVDKQVRDWLKEGIIRHSVSEYS
FT                 SPVVLVAKKDGSKRLCGDYKKLNEKIIRDNFPMALIDDFLLKLQDGRVFTT
FT                 LDLCNGFFHVPVHEDSRKYTSFVTQSGQYEFNYVPFGMTNSPPVFMRYIYA
FT                 VFRPLIDDGILILYMDDIIIPSKDVQEGLEKLKKVLSIAEISGLRIKWEKS
FT                 QVLQRKVNFLGYIIENSTIRPSQDKTSAVENFPIPRDRKQVQRYLGLTSYF
FT                 RRFVKDFAVVARPLTNLMNKDVSFKMGEEELASFNQLKVYLSCSPVLKLFN
FT                 QKGKTEVHCDASMYGYGAILLQIDSEDQCFHPVEYMSRKTTPAEEKYPSYE
FT                 LEVLAIVQALKKWRVYLLGRKIKIITDCNAFALTMRKQDVPVKVSRWAIFL
FT                 QDFDYEIEHRSGTKMKHVDALSRVHCLLLEDSLRHRIKQAQRQDIWISAIC
FT                 KVLESGSYDDFYLKYDILHKDPVKELIVIPSGMESEIIMIAHRQGHFGVKR
FT                 TIDLVQREYFIPELLGKVDRIVKSCVECIVSDAKCGKKEGYLNVIDKSDEP
FT                 LQTYHIDHIGPMELTKKQYNHVLVVVDAFSKFFWLYPTKSTGADDVVDRLQ
FT                 KQGEVFGNPKRVITDRGTAFTANVFEEYCKEQDIQHLLIATGVPRGNGQVE
FT                 RINKVVTTMLTKLCAEDPKAWYKHVGRVQSFINSTPPRSTKISPFKILTGI
FT                 KMRTKYDSDLEKLVEEEYILELQ"
XX
SQ   Sequence 7727 BP; 2389 A; 1477 C; 1841 G; 2020 T; 0 other;
     ttaaagggct tccgggggcg ggaaacctat atccccttcc agacaattta tctctgacga        60
     cgatatacgt ctctccgctg gcggaaaact taactccggc ggcgggatat ttatatcccc       120
     tgctggaaaa cttatgtcta ctgacgaaat agttctctcc gctggcagaa aacttaaatc       180
     cggcggcggg atatttatat cccctgccgg acaacttatc tctgctaacg aaatacgtct       240
     ctccgctggc ggaaaactta tttccggtgg cgggaaatct atatccgctg gcagaaagtt       300
     tatttccggt ggcgggaaat ttataccccc tgccggaaaa cttttctccg ctcacagaca       360
     tcttatctcc gctggcagaa catttacctc cggtgctggg aaagttatat cccctgccgg       420
     acaacttatc tctgctgacg aaatacgtct ctccgctgga ggaaaactta ttgccggtgg       480
     cgggaaatct atgtagggtt ggcagccctt taatgagtat cgatctatcg ctagggatag       540
     tcaggggtag aggaagatat atcgatagta agtaagagtt cgactgcggg agcgagtaga       600
     cgtacagaga agaacgcgtt aagaaaaaga aacttattgt aaccatttat taaaataaag       660
     acaatacaac gatgtgtggc ttatatttga tggagtttct ggagcggatt cttactcact       720
     tgtagggagc ccaccaagga tccctacaat ttgggggctc gtccgggata gaaccacaag       780
     tgaatgtgta ttcgtgtaca agttgccaat accatcaagt tttgcgcaac attgtgaaat       840
     tacgacgaac gaagcaacga agatcagacg aaagcagatg ccgagaagcg gctgtgagaa       900
     acgaaaataa agaggaaaga ggacgcaaaa cgactccatt cgttttcgtc aaggttcaga       960
     gagcagaggt agctaacgac gaagagctac aaagctacaa aacgacgaag agctacagag      1020
     ctacaaaacg acgaggcttc aaaacgacga ggctacaaaa cgacgcagac ccgaaaacga      1080
     cgagtaaaga ggacgcaaaa cgacactatt cgttttcgtc aaagttcaga gagcagaggt      1140
     agctaacggc gaagagctac agagctacaa aacgacgcag acccgaaaac gacgaggaaa      1200
     gaggacgcaa aacgacacta ttcgttttcg tcagaagagc acggcaaacg ggaaagagtg      1260
     aaaagccaac gacgaaagta cggagcaaag aggactgaag agacgttcag attgcgaacg      1320
     tgcagaaaag aggaaagcag aaacgacgaa acaacaacag tggtacttcg cacggccacg      1380
     tgcggcttgt ataccctgcg aacgacaacg acgtgaagaa gacagagaag aagaacgcat      1440
     cgtttatctg cgtgtattgg aaaagacgat tctcacacct gatgtctgta tacgcaagta      1500
     ttgaatatac agaatagatt tagggtgttg caaattttaa gaagcggatt taacgtaaac      1560
     tatattttag ctaattgtaa tatgcaacgc gaagaaatct tagacctaac cgtagcagag      1620
     ttgaaggaaa agttgaaaga gctacatctg cagcattcag gtgttaaatc agttttacgg      1680
     gagagactat attcgtattt tagactagat caagacgaaa acgaagaatc tgtatacgaa      1740
     gaaacgatca atataactgg ggacgaacag acagaagacg cgccaatttt aaattcggta      1800
     ggagaagcag cagttggtag ttcagtaaac atggcgttca cattaagaga catcgaagaa      1860
     tccctttcag catttacggg caatggttct ccggatgttg ataactggct acgtgatttt      1920
     gaacttaatg ccttaacagt gaattggaat gatttgcaaa agtttatata tggcaggaca      1980
     ttagtgaaag gtgcagcgaa attatttttg agcagtcaat caggcattaa tgattggaat      2040
     tctctgaagg aagcactaaa aagtgaattt agtgagaagt taacggcaaa gcaagttcat      2100
     aagctattag aaaatagaaa gaagacccat aaagagactt taattgaata tttttatggc      2160
     aagtcaatcc cagttagatg aagaaagtat tattgaatat attattgagg gcattccaga      2220
     ctccaagcaa aacaaaagct gtctgtacca agcaaacaat tttaaagatt ttcgtgagca      2280
     aattaagatt tatgaaaaga tcagtgcaaa tcaaggaagt acgctaaagg caaacccaaa      2340
     gtttgagaat agttcggtaa aaatcaagga tgaaaggcgt tgtttcaaat gtggaggtag      2400
     taatcatatt gcaaagtatt gcaaggaaag tgccgtcaaa tgttttaatt gcaatcaact      2460
     aggtcacaag gcaaatcaat gcgaggcaaa aggttcacga atggcaacag agaagaaaat      2520
     ttcaaatgtc cagcaatttt ctcagaccag ttttaatcgg gcttttaaga atgttgaaat      2580
     cggtaatgaa gatatcagtg cattgtttga ttctggcagc gatatttgta ccatgagcga      2640
     gaaagtctac agaaagattt tcccagttgc gttgaaaaac gatataaaag aattgatcgg      2700
     aataggaggc aagaaaatat atacgttggg ttcatttaat gttgttacta agttggatga      2760
     cgttcctttg gaaatgtgtt tccatgtagt ccgtgacgat gataccctgt acgaaggtgt      2820
     aattggaagt gatgttcttg attttgtcag tgcaagcata gggaagaaag gagttttctt      2880
     tcattcaata aatgacatcc gtcaagggga ggttgaagtt ccaccggaaa aggagtatgt      2940
     tagcagtagt ttcactaaag gaagccgcaa tctagagttc attaaatata gtgatactca      3000
     agtgagcagg cctccggatt cagggagcgc aattgatgaa ttggaaaaga cgttccatca      3060
     gatactgtcg agcaatatta ttgaagagtt ttcacgagga atagacctgt cgcatttgaa      3120
     ccgtgaggtg aggtcaataa tagcagaatt ggtagaaaat tataagccct taaaaccaga      3180
     aaacagccct gttgaaatga agataatatt gtcagatgaa gtaccggtcc atcaaagacc      3240
     tagacgccta ccttacgtgg acaatgagaa agtcgataag caggtcaggg attggttaaa      3300
     ggagggaata attcgccata gtgtttctga atactcgtcc cctgtagtgc ttgtcgccaa      3360
     gaaggatggc tcaaaaagac tttgtggtga ttataaaaaa cttaatgaaa agataattcg      3420
     tgacaatttt ccaatggcgt taatcgacga ttttttactc aagcttcagg atggacgtgt      3480
     tttcactacg ttggacttgt gtaatgggtt ttttcacgtg ccagtacatg aggattctcg      3540
     taaatatacc tcttttgtca cacagagtgg acagtatgaa tttaattatg taccatttgg      3600
     gatgactaac tcccctccag tatttatgag gtacatatat gctgttttca gaccattgat      3660
     agatgacggt attttgattt tgtatatgga cgatattatt attccatcaa aggatgtgca      3720
     agaaggactt gaaaaattaa agaaggtgtt gagtatcgca gagatttcag gattacgcat      3780
     aaaatgggag aaatcgcaag tgttacagcg caaggttaat tttttgggtt acataataga      3840
     gaattcaacg ataagaccat ctcaagataa aacttcggca gttgaaaatt ttccaattcc      3900
     gagagacagg aaacaagttc aacgctattt gggcctaact tcctatttcc gtagatttgt      3960
     taaggatttt gctgtcgtgg ccagaccact gacaaacttg atgaataagg atgtttcttt      4020
     caaaatgggt gaagaagagt tggcatcatt caatcagttg aaagtttatt tatcctgttc      4080
     tcctgtttta aagttgttta atcagaaggg caaaactgaa gttcactgcg atgcaagtat      4140
     gtatgggtat ggagctatac ttttgcaaat cgactcagag gatcaatgtt tccacccggt      4200
     agaatatatg agtcgtaaga caaccccagc tgaagaaaag tatccttcat acgagcttga      4260
     agtactcgct atagtgcagg ctttaaagaa gtggagagtg tatttgcttg ggagaaagat      4320
     aaaaattatt actgactgta atgcttttgc gttaacgatg aggaaacaag atgttccagt      4380
     taaggtatct cgttgggcca tttttcttca ggacttcgat tatgaaattg agcatcgttc      4440
     agggacaaag atgaaacacg tcgatgcatt gagtagagtg cattgtttgt tgttggaaga      4500
     ttcactgaga catcgaataa agcaggctca acgtcaggat atttggatat cagcaatttg      4560
     taaggtgcta gagtcgggtt cttacgacga cttttatttg aagtatgaca ttttgcacaa      4620
     ggatccagtt aaagagttga tcgtaatacc atctgggatg gaaagcgaaa tcataatgat      4680
     tgctcatcgt cagggtcatt ttggtgtcaa aagaactatc gatttagtgc agcgcgaata      4740
     ctttattcca gagttgttag gaaaagtgga taggattgtt aagtcgtgtg tggagtgcat      4800
     tgtgagcgac gcaaaatgtg gaaagaaaga agggtatttg aatgtaattg acaaatctga      4860
     tgagcctttg caaacgtatc atattgacca tattggacca atggagttga ctaagaaaca      4920
     gtataaccac gtcctagtag ttgtcgacgc tttttctaaa tttttctggc tttatccaac      4980
     aaagagtaca ggcgctgatg atgtggttga taggttgcag aaacagggcg aagtttttgg      5040
     aaacccgaag cgtgtgatca cggatagagg cactgcattt actgctaatg ttttcgagga      5100
     atattgtaag gaacaggata tccaacattt gctgatagcg acaggagtgc cgcgtggtaa      5160
     tggacaggta gagcgaatta ataaggtcgt tactactatg ttaacaaagc tttgcgcaga      5220
     agatccgaaa gcctggtaca agcatgttgg tagggtacaa tcgtttataa actccactcc      5280
     tccgagaagt accaagatat ccccatttaa gattttgaca ggcataaaaa tgaggacaaa      5340
     gtatgacagt gacttagaaa agcttgtaga ggaagagtat attttagagc tgcagtagga      5400
     gaaagaagaa attcgcaaga tagccagaga taacatagtg cagatacaaa atgaaaattg      5460
     caagtcgttc aacaagtccc agaaaccaga aaaagagtac caagttaatg atatggtagc      5520
     tattaagcgt acccaatttg gaaccggatt gaagctaaag ggaagattct tgggtcctta      5580
     tattgtgacg cgtaaactaa gacatggacg gtacattgtt gagaaagtgg gtgatggtga      5640
     agggcctttg aagaccaata cggtggcaga gtatatgaag atgtggtctc aatcattcgg      5700
     gtcgaatgat gagtcaggac ggccgaatgt agggttggca gccctttaat gagtatcgat      5760
     ctatcgctag ggatagtcaa gggtagagga agatatatcg atagtaagta aaagttcgac      5820
     tgcagaagcg aggagacgtg ccaaaggaac tatgctaaga aacctatttg taaccattta      5880
     ttaaaataaa tataatacaa cgacgtgtgg cgtatatttg atggagtttc tggagcggat      5940
     tcttactcac ttgtagggag cccaccaagg atccctacat atatatcccc agacggacaa      6000
     tttatcccag cagacgaatt acgtttctcc gctggcagaa aacttatttc cggtggcggg      6060
     aaatttatat tcgctggcgg aaaacttatc tctgctaacg aaatacgtct ctccgctggc      6120
     ggaaaactta tttccggtgg cgggaaattt atatcccctg ccggaaaact tatctctgct      6180
     gacgaaatac gtctctccgc tggcggaaag ttagttccgg tgctggcaaa tctatatccc      6240
     ctgccggata acctatctct gctgtcgaaa tatgtctctc cggcgaacaa cttatcgccg      6300
     ctggcagaca atttatcccc gcagacgaat tacgtttctc cgctggcaga aaacttattt      6360
     ccggtggcgg gaaatttata ttcgctgacg gaaaacttat ctctgctaac gaaatacgtc      6420
     tctccgctgg cagaaaactt atctccggcg gccggatatt tatatcccct gccggacaat      6480
     ttatctctgc tgacgaaata cgtcactccg ctggcggaaa acttatttcc ggtggcggga      6540
     aatctatatc cgctgacgga caacttatct ccgctggctg acaatttatc tccggcggcg      6600
     ggaaatttat atcccctgcc ggacagctta tctgtgctgg cgaaagacgt cactccgctg      6660
     gcggaaaact tatttccggt ggcgggaaat ttatatccgc tggcggaaaa cttatctctg      6720
     ctaacgaaat acgtcgctcc gctggcggaa agcttatttc cggtggcggg aaatttatat      6780
     ccgctggtgg aaaacttatc tccgctgaca gacatcttat ctccgatggc ggacaattta      6840
     tctccgcaga cgaattacgt ttctccgctg gcggaaaact catttccggt ggcgggaaat      6900
     ttatatcccc tgccggataa cttatctctg ctgacgaaat acgtctctcc gctggcggaa      6960
     agttatttcc ggtggtggga aatctatatc ccctgccgga caacttatct ctgctgtcga      7020
     aatacgtctc tccgctggcg gaaaacttat ttccggtggc gggaaatttt tatcccctgc      7080
     cggaaaactt atctctgcta acgaaatacg tctctccgct ggcggaaaac ttatttccgg      7140
     tggcgagaaa tctatatccg ctgccggaca acttacctcc gctggcagac aatttatctc      7200
     cgctggcgga aaatttatat cccgagacgg acaatttatt cccgcagtcg aattacgttt      7260
     ctccgctggc ggacaactta tatccgctgg cagacaattt atatccgctg acgaactacg      7320
     attctctgct ggcagaaaca cgtctctccg gcggcggaaa aatttatttc cgggggcgga      7380
     caatctatat cccctgccag acgaattacg tttctccgcc ggcagaaaac tgatctccgc      7440
     tggcagaaca tttacctccg gcggcgggaa atttatatcc cctgccggac aacttatctc      7500
     tgctgacgaa acacgtctct ccgctggcgg aaaacttatt tccggtggcg ggaaatatat      7560
     atccggtggc ggacaactta tctctgctga cgaaacacgt ctctccgctg gcggaaaact      7620
     tatttccggt ggcgggaaat ttatatcccc agacggacaa tttatccccg catacgaatt      7680
     acgtctctcc gctggcggaa aatttatttc tggtggcggg aaatata                    7727
//
ID   Gypsy18-I_Dya repbase;    DNA;    INV; 7092 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy18_Dya;
KW   Gypsy18-LTR_Dya; Gypsy18-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7092
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1109-1109 (2009).
XX
DR   Genome; chrU; Positions 4988903 4995994.
XX
CC   Positions [6139-6648] - Integrase core
CC   LTRs are 89% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3772..5433
FT                 /product="Gypsy18-I_Dya_2p"
FT                 /translation="MYLLRSKKPARACHKGTQTDGFEIDDDKLNDFNQTSS
FT                 SVSTTFEVDQVQQKLEVTDTSRSKVRREKRKKLRKEERKLLLSAMVGQLRD
FT                 VRPYAQVQMLGKTVVGLLDTGASVSCICGSLATELPGLNILCQKFTADVRT
FT                 ADGQSQKITGRVTTEVSIRNENKKITFYVVPSLAGDLYLGIDFWKHFQLLP
FT                 EAFCGNNQVVAALEELSARELTQSQQKTLLQVVQLFPSYALKGLGRTELIT
FT                 HSIDVAQAKPVKQRHYAVSPATEKLMYAELDRMLKLGVIEESSSAWSSPVV
FT                 LVQKPGKVRLCIDSRKLNEVTVKDAYPMPLINGILSRLPKAEFITTLDLKD
FT                 AFWQIPLDQSSKDKTARPLYQFVVMPFGLSNSPQTMCRLMNKVIPADLRNE
FT                 VFVYLDDLLIVSDTFERHIEVLQEVASYLQKAKLTINVEKSNFCIKEVKYR
FT                 HVIGNGTVGTDPDKISAIVEFPSPRSMKQLRRFLGMTGLYNKFIKNFAALA
FT                 SPITDTLKNKRRFVWTKEAQEAFEGLKEKMCTAPVLHSPNFDAPFSIHCDA
FT                 IQELVQS"
XX
SQ   Sequence 7092 BP; 2217 A; 1464 C; 1527 G; 1884 T; 0 other;
     acccctagag ggtaagtttt gtgcgtgtgt gaagaatatt atatttcaaa aacaaaaaat        60
     caccattgag gccagtgaga ccagtgaggg aagcataaat tgccgaccag gaggatttct       120
     ggatttcatc agtcagcagc gccaccgtta agcgcaaaaa catgatttaa ttgaattcac       180
     acctgaccga ctgcttgtta agcagatcgg caaccagaca agcagatcag cataagttat       240
     tccgatagaa aaaataaatt ccgccttatg ctaggaaatt aatttaagtt atgttgtaag       300
     agaaatagta ttcatttagg gcaattcctt tcttttcttt tctttccttc tccctttatc       360
     ccattttcct tcctcttccc acataagcaa aagcccgcct aaactggcgt gagcacaaga       420
     atgaagtgaa aagagaagaa agagtaccgc agtaggagag cggctcaaaa gagcagatca       480
     aaaagaaata gctctcttag gattaaaagg cggtgtaagc tgatttctct ttcacaggca       540
     accacttgaa gcgcttcatc gtgggaaatg cagagtgagt aatataaatg tttttattta       600
     aaggagaaag cagctgccgg aagaaaaatc aaataattag ctactgcggc gctacttgtt       660
     tccaagtcca ttgtttacca ataacaaatt caatggaaat aaaaattgct catgtttaaa       720
     atttaccctt gccccaatac tcgcttttct aaaatcttaa aagaataaaa ataagaaaaa       780
     tttaaaaatt aaaatacaca tcccatatac cctacttttc ctattcttaa tgccctgccg       840
     agcgtaagta ttcctttttt taagcaaaca aaaaacttta catttaattt aaatctagat       900
     gtttaaaatg tgtaggttag ggtaatcatt taggatatgt tgtctaaacc tgttccaatt       960
     aaaacattgt cagtttttaa gtttattcca tgctaaaaat taaattttat aatgtttaaa      1020
     tccgagtaaa tctctctagg ggtgggtgcc atgcggcgtc ggaaggtgta tgtcgtgtaa      1080
     aatgtagcat acttgtaggg atcaccggtt atgtcaaatg gttagtggtg gtcaaggtag      1140
     ggtgggcgtc gacagcttaa cagctggtgt cgtacgagtg tgctatgtcc ttgtttgtcc      1200
     ttagtcctgt cgtccgatag tcctttagtg tttcttgtgg agatcaattc ctaagcacgc      1260
     gaaataaata agtgtgtgat aggagacgag caagtagtcg cgatgtcaaa tattcccccc      1320
     ctttactcta ccgagaatta gtagccggaa ccagcgcgtg cttgatcgcc caactgcaat      1380
     ttaccatctg ctcgggaaag ttatactcgt agttcgctac agtatactta atatttatca      1440
     taatcttatt ttggcgccca acgtggggcc cgattctgtc atggtgacag atcgatcaaa      1500
     ccgtcaataa catctgacga tcgtccccaa gatctccaca tgttcatcaa caaaagtatg      1560
     tggtcaaagc aaaaaaaaat cgcgatctag aaatccgaaa attgcttaaa tcaggcagca      1620
     ggaaaagtat tagtcatttg gctcttacgc cgctactgaa tcagaacaca tattgtttta      1680
     ttactattat aatattaaat tgtcctatta tctgctggaa gagtttcagc tatttagctt      1740
     taacgccgcg tcataattag tgcatttaat gttttaataa tttattttgt tatttttatt      1800
     cctttttaat tttgttttgt tcgttagtct tttgtataaa attaaaaaaa ttaaatgtat      1860
     aaattgtaca agccaaatct tgtcttttgc cttttgtgtt ttgtataatt tgtcatatat      1920
     taatgaaatt caaaaggtta atgtacatag gatgttaaac ataggactag tgaaaagttc      1980
     actaggattt caaagaatca aggaaccact tgttgccttt ggccttgtgt tgagccaaga      2040
     tatttgtttt ctatgtctaa atacaacatc cttcaccttc cattctagta attttctctt      2100
     ttaaatcagt agtgtcaata gcgtacattt aaaccacgtc aggactttag taacaaggaa      2160
     ttttacacaa cgatacctga aaacgattgc atggcacccc gatttttatt tgtttattta      2220
     ttttctttac cttatttttg tgttctcaat taattattta ataggataat tttttttatt      2280
     aatagtccac attatttatt tatttatttt attatatgtt cttgagtgta tagtagaggt      2340
     cagagtaaag cataggttca ttagagatgc cactagcaca cagcaccgaa gacttatcta      2400
     gaattgtcga aaatatatgc cacatctgcg ctagaactat ttcttatcct agccaaattt      2460
     taaccaccag ttgcggacac gaatttcacc gaacttgctt tactgcaaaa tcggggggtc      2520
     tgctctagtt ccctttcatt accgtccacc gaaaacttgt ccggggacct agaaaaccaa      2580
     ccctgagggt caaaactcaa aactccaaga gcacaaccga acgttctgac taggtccaaa      2640
     accagtcaag aaaggctaca acaaaaaacg acaatgtcca acttaaaaaa ccgagaacag      2700
     ccttcacctc cgactgaacc cacaaccgat tttcagacag caatggctga aagcataaaa      2760
     tcggctatct cgggaaccat tacggcagcc ttggtccaac aaacaaaatg ttttgcagac      2820
     gctttgggcc aacacacaaa taatctgacc caagcgatca ctgcgggctt tcaagctcag      2880
     gcatcaagcc tttcgtctaa tcaagtattc ctagacccat tatacgaccg atctaaagga      2940
     gttccacaag gctcaccaaa tataggtcca acccgtagcg ttaaccagtc acctgcatca      3000
     gcaatgacct ccttaagacc ggataagatc gcccagataa tttttaactg gaaactacgt      3060
     ttctcaggaa aaggtccaat ggctgtcgag gactttattt accgagtcga agctttagcc      3120
     ggtcaaacat tggacggtaa tcttcaactc gtggctcaaa atgccagtac gttattcgag      3180
     ggtattgcga gcgagtgcta ttggcgttac cacaaaagtg taaccgttga gcgctggtat      3240
     gaattatgcg ccgcactcaa agggcaattt aaggacgacc gaactgacag aaatatcagg      3300
     gccgagatag accagagaaa gcaacgcgga agcgaatcat tcgatgattt ctaccgggta      3360
     atcgcaactc ttgcggatag actatgtcag aaggagctat ggttgaaacc ttacgagcca      3420
     atctccaacc cgatattcag cacgaaattt tatacgagcg tgccgatacc gttcccgaat      3480
     gaagagggtt ggttaggact cgggaaatct taatgcaaag cgtagggaag cctcaggggc      3540
     tcaggggcca caacgccagg tacccaggcg acaggtgtgc gaggtccaat gccagatcga      3600
     gtcagaatcg gaactcgaag atctagagga agacctagag ttagcggcca tggaattgca      3660
     gtgctggaac tgccaggaaa agggtcacag gtatcaggag tgcaccgcag acagacgtgt      3720
     cttctgttat tgttgcggta aagcagatac gtataagccg tcatgcagta aatgtacttg      3780
     ttacgctcca aaaaaccagc aagggcgtgc cacaagggca cgcagacaga tggtttcgaa      3840
     atcgacgatg acaaactaaa cgatttcaac caaacaagta gcagcgtatc tacaaccttt      3900
     gaggtggacc aggtccaaca aaagctagag gtcacagata caagccgatc aaaagttcgc      3960
     agggagaaaa gaaaaaaact aagaaaggaa gaacggaagc tgcttctctc agccatggtg      4020
     gggcaacttc gcgacgttag gccgtatgct caggtacaaa tgctaggaaa aacagtagtg      4080
     ggtttattgg atacaggggc atctgttagc tgcatatgtg gtagtctggc cacagagctg      4140
     ccaggtctaa atattttatg ccaaaaattt accgcagatg ttagaacagc cgatggacaa      4200
     tctcaaaaaa ttaccggccg agtaaccact gaagtgtcta tccgaaacga gaataaaaaa      4260
     atcaccttct acgtagttcc atctttagca ggggatctct atttaggaat agatttttgg      4320
     aagcactttc agctactacc tgaagctttc tgtggcaaca accaagtagt ggcagcctta      4380
     gaggagcttt cggctcgaga gcttactcaa agccagcaga aaacgctgct tcaggttgtt      4440
     caacttttcc cgtcgtatgc cttaaaagga ttaggaagga ccgaattgat tacccactcc      4500
     attgatgttg ctcaagcaaa gccagtaaag caaagacact atgccgtatc gcctgcaaca      4560
     gaaaaactga tgtacgccga gttggatagg atgctcaagt taggggttat cgaagagtca      4620
     tccagcgctt ggtcctcgcc agtagtcctg gtacaaaaac caggaaaagt taggctttgt      4680
     atcgatagcc gaaagttaaa tgaggtgacg gtaaaagatg cataccccat gcccttaata      4740
     aatggaatat tgagtagact ccctaaagct gaattcatta ctaccttaga ccttaaggat      4800
     gcattctggc agatcccgct agaccaaagc tccaaggaca aaacagcgag acccctttac      4860
     caatttgtgg ttatgccttt tgggctatca aattctcctc agactatgtg caggctgatg      4920
     aataaggtga tacccgcaga cttgagaaac gaggtgttcg tttacctgga cgacctacta      4980
     atagtctcag acacgttcga aagacacata gaagttttgc aggaggttgc ctcttatcta      5040
     caaaaagcca aactaaccat aaatgtggag aagagcaact tttgcatcaa agaagtaaaa      5100
     tatagacatg tgattggaaa tggaactgta gggacggacc cagacaaaat atccgccata      5160
     gtcgagtttc caagcccgcg atcaatgaag caactacgtc gatttttagg gatgactggg      5220
     ttgtacaata agttcataaa gaacttcgca gcgctagcct ctccaattac agataccctt      5280
     aaaaataaac ggagatttgt ttggacgaag gaagctcagg aagcctttga ggggctaaag      5340
     gaaaaaatgt gcactgcccc tgttttacac agtccgaatt ttgacgcacc tttttccatt      5400
     cattgcgatg caatacagga gttggtgcag tcctgatgca gcaagactcg gaaggaaacg      5460
     aggttctgat ctcctttatg tctcggaagc tgaaaaggtg ccaatcaaac tacacgatga      5520
     ccgaaaagga gtgtctggca gccgtgttgg cagtaaaaaa aatttagggc atatgtggag      5580
     ggtcaagaat tcagtattat cacggatcac gcttctttaa aatggcttat gtcccaggca      5640
     gacctcagtt cccgtctggc ccgctggtcc ctaaaattac aagggtttaa gtttaatata      5700
     agccatagaa aaggcagtca gaacgtggtg ccagacgccc tgtcaaggac ctttacagac      5760
     gacctatccg ctttcgaagt agcaagttta gtggatatgg aggccaaagc attccgggga      5820
     atagagtacg aaaatttaaa gtcagctgtc tcttcaggaa caccaagatt gttggatgtc      5880
     aggattagca acgggtactt atatcgccgc gcggaacacg ctgcagacga aaaggttgga      5940
     gatgagtctt gctggcttca caaagaaata gttcccgact tgctaaaaag agatcctgaa      6000
     gatctcatgg cagcccactg cggagtaggt aaaatgttgg agaaactaag aagatatttt      6060
     tattggccaa atttagcagc agatgtcaag gaatttgtca acaagtgagc ggtgtgtaaa      6120
     actaccaaac accccagtca aatcttaagg ccacccttag gaaatactgg tcgttcaaac      6180
     aggatcttcc aaagacttta tgtcgatttt ttaggaccgt atccgcgtag ctcagaaggg      6240
     aatataggat tgttcatagt cgtcgatcat gcttcaaagt tcccatttct caaagccgta      6300
     aaaaagttta caacggaggc tatccttccc ttcctggaaa aagaaatctt ccactgtttt      6360
     ggcgttccgg aaacaatcat ttccgacaat ggggtacaat ttaaatccgt ggctttcaat      6420
     tccctgttag aaaaatatgg cgtggcgcat tcttatgccg ctatttatgc accgcaagcc      6480
     aacgcttcag aaagggtcaa cagatccgtt ttagctgcta ttaaagctta catagaccca      6540
     aaccaaaaga actgggatag taagctcagt agcatctgtt gcgcgttgag attgagttta      6600
     cactcagcca gtaaaacaac tccctacaga atggtgtttg ggcagcacat gatagaagac      6660
     gggatgtcgt atcgaattat tagagaactc agactgctgg aagatagaac tatgcagttt      6720
     gataaagacg actcgaggga tataatcatg cgtaccgccc aggaggcgat ggacgtccaa      6780
     aggcaaagaa acgagcggtc ctacaatttg agaagccgag aggcttatag acctggacag      6840
     gaagtgtatc gacggaactt ccagcaaagc aatttttgca aagggtttag ctcaaaactg      6900
     gctccggtct tcataaaatc aagagttcgg aagaagctag gagctgctta ttacgagatc      6960
     gagaatctcc aaggaaaggt tgtaggcaag taccatgcta aagacctacg gcaatagaaa      7020
     gtatccgccc gacaagcttg aatcttcctt gtgtaatact ttaccccaag ttagattttg      7080
     gtagggggga at                                                          7092
//
ID   Gypsy18-LTR_Dpse repbase;    DNA;    INV; 184 BP.
XX
AC   Unknown_group_563;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy18_Dpse;
KW   Gypsy18-I_Dpse; Gypsy18-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-184
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1110-1110 (2009).
XX
DR   Genome; Unknown_group_563; Positions   98855   99038.
XX
SQ   Sequence 184 BP; 44 A; 54 C; 31 G; 55 T; 0 other;
     tgtagggatc cttggtgggc tccctacaag tgagtaagaa tccgctccag aaactccatc        60
     aaatatacgc cacacttagc atagttcttt tcgcacgtct gctcgcttct gccgtcgaac       120
     tcttacttac tatcgatata tcttcctcta cccttgacta tccctagcga tagatcgata       180
     ctca                                                                    184
//
ID   Gypsy18-LTR_Dya repbase;    DNA;    INV; 311 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy18_Dya;
KW   Gypsy18-I_Dya; Gypsy18-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-311
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1111-1111 (2009).
XX
DR   Genome; chrU; Positions 4988592 4988902.
XX
SQ   Sequence 311 BP; 110 A; 46 C; 65 G; 90 T; 0 other;
     tgtaaggtag cttgtcgttg atctcggcct aaaagtaggc acttaattag gtcgttcgta        60
     aggtcgggaa aaatgttaat taggctgtca tgaagaacat ttctccaact gcatttttgg       120
     agttcagaca aggggcatta attgagttta aaccagcgag taaggaagtg cgtccgagct       180
     atccaaaaat aaaatttagt gtctctcaaa attacaaaaa aaaaaagaga atttaaccaa       240
     aatttaaatt tgtggatcga gaagataacc cagtgaatcg gaaaatttat atttcgttaa       300
     ctttagtgcc a                                                            311
//
ID   GYPSY19-I_AG repbase;    DNA;    INV; 4176 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY19-I_AG is an internal portion of retrotransposon GYPSY19_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY19-I_AG; GYPSY19-LTR_AG; GYPSY19_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4176
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY19_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 3-3 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY19_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG,
CC   GYPSY24_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY19-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 1330-aa GYPSY19_AGp gag-pol like
CC   protein
CC   (pos. 97-4086).
CC   The sequence of the LTRs flanking GYPSY19-I is deposited as
CC   GYPSY19-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..4086
FT                 /product="GYPSY19_AGp"
FT                 /translation="MIEEKPTSSGTKQNIAQSEQRTTMAKFDMEPFNKGLM
FT                 QWARWVKRFEGAMSVFEVKSNNKKAMLLHYMGVDSYNLLCDHISPEEPEDK
FT                 TYEQIVKCLDELFDPKPLEMVELWKFRQRLQTEGETVTEFITALQKVAANC
FT                 DFGQYLTKALRNQLVFGVRNPRIRNRLIEERNLTLEKAKQIALAMEAAGDG
FT                 AEVLNSRSAEVLNSRGAEVKEVNIVSNTTKKNVECYRCGESHFAYVCKHKR
FT                 TVCKKCGKIGHLQRVCRTNNRSKSVRLIDEQHQDSEENEEVNSILINNLYQ
FT                 NANHTAKIYITLKVNNTKIQFEVDSGSPFSIISMNDKQRWFKDIPIRESDI
FT                 KLQSYCGGSIKLFGTISVIVENAKTKLTLFVVESKRGPIVGRTWMRDLKFD
FT                 WNELLSKGNSYVNQIVTHSNTNQEVIKKLKEEFEVVFRKSLGEISNIQASL
FT                 ILKENALPIFLKNRTIPFALKESVEKEINDLVNQGILIKVNRSEWATPIVP
FT                 VKKSGNRVRLCGDYKLTVNKNLVIDEFPLPTIEELFANMAGGEKFSKIDLA
FT                 QAYLQMTVKPEHQEFLTLNTHMGLFRPTRLMYGVASAPAIFQREITQILQG
FT                 IPGVSVFLDDVKITAPDDKTHVERLRTVLKRFQDHNMRVNDSKCNFLADCI
FT                 EYCGYRIDKYGIHKMKEKITAIQLMPKPRNKDEVRAFVGLVNYYARFIPNL
FT                 SEKIYPINNLLKNEIPFEWHEGCQDAFEWIKKEMQSERILVHYDPSLPIAL
FT                 AVDASPYGVGAVLSHIYPDGKEYPIQYASQTLSPTQQRYTQVDKEAYAIIF
FT                 GVKKFYRYLYGRKFILITDNKPVSQILSPQKGLPTLSATRMQHYAVFLESF
FT                 NFEIRYRPSKEHGNADGMSRLPIRDIQLEDTEEPDEIELNQIENLPVSVEE
FT                 LSKETSKDINVQLLIDGLNSGRTVSINDRFGIDQTQFSLQKGCLMRGARVY
FT                 VPPQLRNRVLDELHEGHFGISRMKSLARSYCWWKNMDNDIERLSKNCVSCA
FT                 KVRKDPPKVPTHVWKRPQSVFERVHADYAGPFMGIYFLILVDAYSKWPEVK
FT                 ITPDMNTDTTIDKMREIFATFGLPSILVTDRGTQFMSEKFQTFLKSNGITH
FT                 KTGAPYHPATNGQAERYVQTIKDKIKTMQCHKSEIPKKLQNILLAYRKTTH
FT                 PSTGESPSRLMLNRQIRSRLDVMVPKIEKKSNPEVVHKTTRSFAVNERVAA
FT                 RDFLSQTEKWKFGTITKKLGKLHYEIRLDDGRMWKRHINQMRSGPEEISIH
FT                 HSSNQNIEPWIDESVYLPDRMEEFQLPHDSETEMVRSDNINEDLACGEESQ
FT                 TQVRRSTRTRQPPIRYRD"
XX
SQ   Sequence 4176 BP; 1549 A; 739 C; 846 G; 1042 T; 0 other;
     attggcgacg agtgacaaat tctgagaacc ctggaacgct agcgctacgc agttaaagaa        60
     aagctgaaac aatcgggtat aagtggagac agtgtcatga tcgaagagaa accaacaagc       120
     agtggtacaa agcagaacat cgcacagagt gaacaacgca ccacaatggc aaaattcgat       180
     atggaacctt ttaacaaagg gctcatgcaa tgggcccgct gggtgaaacg cttcgaagga       240
     gcaatgtcgg tatttgaggt taaatcgaat aataaaaaag ccatgcttct gcattacatg       300
     ggtgttgatt catacaattt attgtgtgat catatttctc cggaagaacc agaagacaaa       360
     acatacgaac aaatagtgaa gtgtttggat gagctgttcg acccgaaacc cctcgaaatg       420
     gtggaactat ggaagtttcg tcaacgactt cagactgaag gcgaaactgt aacggagttc       480
     atcacggctt tgcaaaaagt ggcggctaat tgtgatttcg ggcaatattt gacaaaggcg       540
     ctcaggaacc agctagtttt tggtgtacgg aatccaagaa tacgcaaccg gctgattgaa       600
     gaaagaaatc taacactgga aaaagctaag caaattgctt tagccatgga agccgccgga       660
     gatggcgctg aagtgctgaa tagcagaagt gctgaagtgc tgaatagcag aggtgctgaa       720
     gtgaaagaag taaacatcgt gagcaacaca acgaagaaaa acgtcgagtg ttatagatgt       780
     ggagaatcac attttgcata tgtatgcaag cacaaaagaa ccgtctgcaa aaagtgcggg       840
     aaaattggac atttgcagcg cgtctgtcgc acgaacaata gaagcaaaag tgtgaggtta       900
     attgatgaac aacatcaaga cagcgaggag aacgaagagg taaactcaat tttgatcaac       960
     aatttatacc aaaatgcaaa ccataccgca aaaatataca taacactaaa agtcaataat      1020
     actaaaattc aatttgaagt agattcagga tccccgtttt ctattatcag tatgaacgac      1080
     aaacaaagat ggtttaaaga tatccctatt agagaatcag atataaaatt acaaagctat      1140
     tgtggaggat ctataaagtt atttggtaca attagtgtta tagtggaaaa tgctaaaaca      1200
     aaattaacac tatttgtggt agagtctaaa agaggaccta ttgtaggaag aacatggatg      1260
     cgagatttga aatttgattg gaacgaatta ttaagtaagg ggaactcgta cgtaaatcaa      1320
     attgtcaccc attctaatac taatcaagaa gtgataaaaa aattaaaaga agaattcgag      1380
     gtagtctttc gtaagtcatt aggagagatt tcaaatattc aagcatctct tatcctaaaa      1440
     gaaaatgcgt tgccaatatt tctaaaaaat cgtactatac catttgcatt aaaagaaagt      1500
     gtcgagaaag aaattaacga tttagtaaat caaggaattt taataaaagt caatcgcagt      1560
     gaatgggcta caccaatagt acccgtaaaa aaatcaggaa accgtgtacg attgtgtgga      1620
     gattataaat taacggtgaa caaaaacttg gtaatagacg agtttccttt gcccacaata      1680
     gaggagcttt ttgctaacat ggctggggga gaaaaattct cgaaaataga tttagcgcag      1740
     gcatatttac agatgacagt taaacctgaa catcaggaat ttttaacact gaacactcac      1800
     atgggactat tcagaccaac acggttaatg tacggggttg cttctgcccc agccatattc      1860
     caaagagaaa tcacacagat tctccaagga attccaggcg tttctgtatt tttagatgat      1920
     gttaaaataa cagctcctga tgacaagacc catgtggaaa gactgcgcac tgttttaaaa      1980
     cgatttcaag accataatat gagagtgaat gatagcaaat gtaatttcct tgcagattgc      2040
     atagaatact gtggatacag gatcgacaag tacggtattc acaaaatgaa ggagaaaatt      2100
     actgccattc aactaatgcc aaaaccaagg aacaaagatg aggtaagagc ttttgtaggc      2160
     cttgtgaatt attacgcgag atttatccca aatttaagtg aaaagatcta tcccataaat      2220
     aatttactta aaaacgaaat tcctttcgaa tggcatgaag gttgccagga cgcatttgaa      2280
     tggatcaaaa aggaaatgca atctgaacgg atcttggtac actacgatcc tagcttacca      2340
     atagctctag cagtagatgc ttcgccctac ggagttggcg ccgttttaag tcacatctat      2400
     ccagatggca aagaatatcc aattcaatac gcatctcaaa cactatcacc aacccaacaa      2460
     agatatactc aggtggataa agaagcatat gcgattattt tcggagttaa aaagttttac      2520
     cgatatcttt atggaagaaa atttatctta ataaccgata acaagccagt ttctcaaatt      2580
     ctatcaccac agaaaggttt gccaacgcta tcagcaactc gcatgcaaca ttacgctgta      2640
     tttctagaat cattcaattt tgagattaga tatcgaccat caaaagaaca cggaaatgct      2700
     gacggaatgt cacgattgcc aatccgagac attcagctgg aggatacaga agaacccgat      2760
     gaaattgaac taaatcaaat agaaaatctt cccgtatcag tagaagaact tagtaaagag      2820
     actagcaaag acataaatgt tcaattacta atagacggat taaattcagg gagaacagta      2880
     tccattaacg atcgttttgg aatcgaccag acacaatttt ctcttcaaaa gggatgtctt      2940
     atgagaggcg ctagggtcta cgttccacct caattacgaa atcgagtctt agacgaactt      3000
     catgaaggcc atttcggcat atcacgcatg aaatctcttg ctagatctta ttgttggtgg      3060
     aaaaatatgg ataacgacat agaaagatta tcaaaaaact gtgtttcttg tgcaaaagta      3120
     agaaaagatc ctcctaaagt accaactcat gtatggaagc gtccacaatc agtttttgaa      3180
     agagtacatg cggattacgc tgggccattt atgggtatat attttcttat tctagtagat      3240
     gcgtacagca aatggcctga agtaaaaata acaccggata tgaatacaga cactactata      3300
     gacaaaatgc gagaaatttt tgccactttt ggcttgccat caattttagt gaccgataga      3360
     ggtacacaat tcatgtcaga aaaattccaa acattcttaa aatctaacgg aataacccat      3420
     aaaacaggag ctccttacca tcccgcaaca aatggtcagg cagaaagata tgtacaaaca      3480
     attaaagata aaattaaaac tatgcaatgc cataaatctg aaattccaaa aaagttacaa      3540
     aacatactgc tagcgtacag gaaaacaact catccaagca caggggaaag tccctcgcgg      3600
     ttaatgttaa acagacagat acggtctcgg cttgatgtta tggtaccaaa aatcgaaaag      3660
     aaatccaatc ccgaagtagt acacaaaacg acaagatcat ttgcagtaaa cgaaagagta      3720
     gcagcaagag atttcctttc ccagaccgaa aagtggaaat ttggaacgat tacaaagaag      3780
     ctaggaaaac tgcattacga aatacgatta gacgatggaa ggatgtggaa aaggcacata      3840
     aaccaaatga gatctggtcc tgaagaaata tcaatccacc atagtagtaa ccaaaacata      3900
     gaaccttgga tagatgaatc agtttatctg ccagatagga tggaagagtt tcaactccct      3960
     catgattcag aaacggagat ggttagatct gataatatca atgaagattt agcttgtgga      4020
     gaagaatctc aaactcaagt taggagatca acaagaactc gacaaccacc aattcgatac      4080
     cgtgattagg gattattact ttaatttaga atataaatat gaattgtctt tcacacttta      4140
     gcaagtaatc actttatatt gttaggagga gagagt                                4176
//
ID   Gypsy19-I_Dpse repbase;    DNA;    INV; 5115 BP.
XX
AC   Unknown_singleton_87;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy19_Dpse;
KW   Gypsy19-LTR_Dpse; Gypsy19-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5115
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1112-1112 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions    7924    2810.
XX
CC   Positions [4126-4611] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..5025
FT                 /product="Gypsy19-I_Dpse_1p"
FT                 /translation="MAEETMANIDKEKIVEWLLEKEIIFPASATLRQLRKL
FT                 AISGGMDEVSESLVNKSDIESEEKVSENEQIDDMKEEELLDAAIRVAEKKK
FT                 KLAALMVMDNHVTDDIRMVKQLIAPFSASENDEASEWVLNFERICGGVNES
FT                 SNFKLRCVRMLMKAGTEADLFMRVDKSKTYDEFKGNFLKTFGRSNSTADVV
FT                 LLLKETFFNPEKNSVMGYILRMEEIAMRADIEEKLTVQFIIDGFRDRSSSI
FT                 ALLYSASTIGKLKELARQYEALRKSTQTNFRRTGMTASGNDRSQARCYNCS
FT                 AHGHYASSCPAPKREKGSCFQCGSMQHQVKDCQQKPMSAQRSVGTASNPPM
FT                 DDREENNIFVPIVNQVGVYFYTDIKRRYQIKFLSGMLDTGSAINLMQRSAI
FT                 PYENFDGVLRPTEYFGVNGSRISIFGKIIVNLVFHNIEKELIFFVVPNNYI
FT                 SYNVLLGRSFLENYGIKLIFENEIEIENRVLVNSDLDENRVLVNNDLDENR
FT                 VLVNSDLDENRVLVNSDLDENRVLVNSDLDENRVLVNSDLDENRILVNSDL
FT                 DENRVLVNSDLDENRVLVNIDLDENRVLVNSDLDENRVLVNSDLDENRVLV
FT                 NSDLDENRVLVNSDLDENRILVNSDLDENRILVNSDLDENRVLVNIESDQI
FT                 ENVVLTNRDSEMMLSDINNNGLLKDENYENKISVQLNCNNIDLLLKDNEQK
FT                 HMASESLERTNLDIPYIYSIEITKEEDSYNIDPNRTDKERSKFMELIKLNY
FT                 SDLTNIPAIQHNYEMNLKLKSEEPVRTVPRRLSYQEKKEVDTQIDELLKKG
FT                 FIRESKSPYSSAIVLVKKKSGEKRMCVDYKQLNKICIRDGYPLPLIDDCLE
FT                 RLEGNTIFTLLDLKHSYHQVKVAESSVQYTAFVIPSGQYEYTRMPFGLMNA
FT                 PAVFMRFINFILQPLIREGNVVVYMDDIAIGSKSLNEHLITVGRVLRILAE
FT                 YRLEIKVSKCQFGYESIEFLGYTLSGKGISPNCEHTATIKHLPLPKDRHEM
FT                 QKVLGLFSYFRRFIPAYSRIAKPLQELTKPGTKFELQDKCIQIFEYLREKL
FT                 ISSPVLALYNPNRETELHCDASSEGFGGILLQKQDDNKFHPTAYFSQRATK
FT                 LEARYESFKLETLAVIYSLRKFRIYLEGIPFRIITDCNSVVLCLGKGRLHS
FT                 NIARWAIELANYNYTLKHRSGKYMSHVDTLSRYPSALNQDFEYEPIVTIHE
FT                 SDNKDRIVSVIECDDINLQLQITQNRDNHIGKLKEQLEHGPVKKFSLSDGI
FT                 VYKIGENDVELFYVPAEMETQIIRRVHENLCHLGTEKCMKEILRHYWFPNM
FT                 RSKIDLFIGNCLNCIMFSVPTHANNRTLHNIPKRPIPFDTLHVDHFGPLPA
FT                 VISKKKHVLVIIDAFTKFVKLFSVNTTSTKEVNTCFSKYFQFYSRPRRIIS
FT                 DRGTCFTSLEFSKFLLENNIEHVKVATASPQANGQVERVNRTMKAMLAKIT
FT                 EPINHEDWSKLLIKAEYAINNSVHSTTKELPSVLLFGVQQRGCNIDALTEY
FT                 LDDKQDRTQSDLESVRKKSLDKIEHCQQKSEEYFERNHKNHIEFLEGDFVV
FT                 MRNIDTTIGTNKKFVPKYRGPYIIKKVLPNDRYVLNDIENCQISQIPYEGI
FT                 IEACRLRKWADWRNQCESDPYLNS"
XX
SQ   Sequence 5115 BP; 1834 A; 798 C; 1072 G; 1411 T; 0 other;
     ataacttcag aagtgggata gtagcccttt aaagaatctg cctacataag tatttgtcta        60
     ctggcatccc cgacaacgag tattttccac attttataaa tggctgagga aaccatggca       120
     aacattgaca aagaaaaaat tgtagagtgg ttgctggaga aagagatcat ttttccagcc       180
     agcgcaacac taaggcaact tcgcaagctt gccataagtg gtggaatgga tgaagtttct       240
     gaaagtctgg tgaataaatc ggatattgaa tcggaggaga aagtgtctga aaatgagcag       300
     atcgacgata tgaaagaaga agaattactt gacgccgcaa taagggttgc tgagaaaaag       360
     aagaaactgg ctgccttaat ggtaatggac aaccatgtga ccgatgacat ccgaatggtc       420
     aagcaactga ttgccccttt ttctgccagt gaaaatgatg aagcctctga atgggtcttg       480
     aattttgaac ggatttgcgg aggcgtgaac gaaagcagca attttaagct tcgttgtgtg       540
     cgcatgttga tgaaggcggg aacagaggcg gacttgttca tgcgtgtcga caaatcaaag       600
     acttacgacg agtttaaagg aaacttccta aaaacttttg gccgcagcaa ttcaactgcc       660
     gacgtggtac tcctgttgaa ggaaaccttt ttcaacccgg agaaaaactc cgtaatggga       720
     tatattcttc gcatggaaga aattgctatg cgtgccgaca tcgaagagaa attgacagtg       780
     cagttcatca ttgatggttt tcgtgatcga tcttccagta tcgccttatt gtattcagcg       840
     tcgaccatcg gaaaacttaa ggagctagct cgacaatacg aggctttgag gaagagtacc       900
     cagacgaatt ttaggcgcac tgggatgact gcttccggaa atgaccggag ccaggcgcgc       960
     tgctataatt gttcagcaca tggccattat gcttcatcgt gtcccgcacc taagcgggag      1020
     aagggatcgt gtttccagtg tggatccatg cagcaccagg tgaaggattg ccaacagaag      1080
     cctatgtcag cccagcgatc cgtgggtaca gccagcaacc cgccgatgga cgacagagag      1140
     gagaacaata tttttgttcc tattgttaat caggtagggg tatattttta cactgatata      1200
     aaacgcaggt atcaaattaa atttctttct ggcatgttgg acaccggtag cgctattaat      1260
     ttgatgcagc gctcggcgat accttatgaa aattttgatg gtgtactaag accgacagag      1320
     tattttggag ttaacggttc gagaataagc atttttggaa aaataattgt caatttagtt      1380
     tttcataaca ttgaaaaaga acttatattt ttcgttgtac caaacaacta tatttcgtat      1440
     aatgtccttc tggggcgcag tttccttgaa aattatggaa taaaattaat ttttgaaaat      1500
     gaaattgaaa ttgaaaatag agtattagtg aacagtgact tagatgaaaa tagagtatta      1560
     gtgaacaatg acttagatga aaatagagta ttagtgaaca gtgacttaga tgaaaataga      1620
     gtattagtga acagtgactt agatgaaaat agagtattag tgaacagtga cttagatgaa      1680
     aatagagtat tagtgaacag tgacttagat gaaaatagaa tattagtgaa cagtgactta      1740
     gatgaaaata gagtattagt gaacagtgac ttagatgaaa atagagtatt agtgaacatt      1800
     gacttagatg aaaatagagt attagtgaac agtgacttag atgaaaatag agtattagtg      1860
     aacagtgact tagatgaaaa tagagtatta gtgaacagtg acttagatga aaatagagta      1920
     ttagtgaaca gtgacttaga tgaaaataga atattagtga acagtgactt agatgaaaat      1980
     agaatattag tgaacagtga cttagatgaa aatagagtat tagtgaacat tgagagcgac      2040
     caaattgaaa atgtagtatt gacaaataga gacagtgaga tgatgttatc agatatcaat      2100
     aataatggat tattgaagga tgaaaattat gagaataaga ttagtgtcca attgaattgt      2160
     aataacattg accttttatt gaaagataac gagcaaaagc atatggcaag tgaatcatta      2220
     gaaagaacca acttagatat accgtatata tatagtattg aaataacaaa agaagaggac      2280
     agctataata tcgacccaaa tcgaactgat aaagaacgta gtaaattcat ggaattgata      2340
     aaacttaact attcagactt aactaacatt ccagcaattc aacataacta tgaaatgaac      2400
     ctcaaactta aatcagaaga acctgtacgc actgttccga gaagactttc atatcaggag      2460
     aagaaagaag tagataccca aatagatgaa ctattgaaaa aaggcttcat aagagaaagt      2520
     aaatcgcctt acagctctgc aatagtatta gttaagaaaa aatcagggga aaaaagaatg      2580
     tgtgtagatt acaaacagct taataagatt tgcattcgtg atggatatcc attgccacta      2640
     atagacgact gcttagagag attagaaggg aacacaattt ttacactttt agatttgaaa      2700
     cacagttatc accaagtaaa agtagcagaa agttcagtgc agtatacagc atttgtcata      2760
     cctagcggac aatatgaata cacaagaatg ccttttgggc ttatgaatgc accagcagta      2820
     tttatgagat ttattaattt cattttacaa ccattaattc gcgaaggtaa tgtagtagtt      2880
     tatatggacg atatcgctat aggttccaag tcgttgaacg aacatcttat aacagtaggt      2940
     agagttttaa gaattctcgc agaatatcga ctagaaatta aggttagtaa atgtcaattt      3000
     ggttatgaaa gtattgagtt cttgggatat accctttctg gtaagggaat aagcccaaac      3060
     tgtgaacaca cagcaaccat taagcatctg ccattgccaa aagatcgcca tgaaatgcaa      3120
     aaggttttgg gattattctc ttattttagg cgtttcattc ctgcttactc aagaatagca      3180
     aaaccattac aagaacttac aaaacctgga actaagtttg agcttcaaga caaatgcata      3240
     caaatttttg aatatcttcg agaaaaactg atttcgtcac cagtattagc tctgtataat      3300
     ccaaatcgag aaacagaatt gcattgtgat gcaagtagtg aaggttttgg tggaattttg      3360
     ttgcagaaac aagatgacaa taagtttcac ccaacagcat atttttcaca gagagcgaca      3420
     aaactagagg caagatacga aagtttcaag ctggaaacgt tagctgtgat ctattcattg      3480
     aggaaatttc gaatttattt agaagggatt ccgtttagaa ttataacaga ttgtaactca      3540
     gtagttttat gtttaggaaa gggacgtctt cattcaaata tcgccagatg ggccatagag      3600
     ctagcaaatt ataattacac tttaaaacat cgtagtggaa aatatatgtc ccatgtggac      3660
     accttaagta gatatccttc agcgcttaat caagattttg aatatgaacc aatagtgaca      3720
     attcatgaaa gtgataacaa agaccgaata gtttccgtga ttgagtgtga cgacattaat      3780
     cttcagcttc agataacaca aaacagggac aaccatatag gaaaattaaa agaacaattg      3840
     gagcatggac ctgttaagaa attttcattg agcgatggaa ttgtttataa aataggtgag      3900
     aacgacgttg agctgtttta tgtcccagct gaaatggaaa cgcaaataat cagaagagtt      3960
     cacgaaaact tatgtcactt aggaactgag aaatgtatga aagaaatctt aagacattat      4020
     tggttcccga atatgagatc taaaatcgat ttgtttatag gaaattgttt aaattgtatc      4080
     atgttttcag tccccacaca tgcgaacaat cgaacacttc acaatattcc taagcgacca      4140
     atcccattcg acaccttaca cgtagaccat tttggaccac ttcccgctgt tatatcaaag      4200
     aagaagcatg tattagttat cattgacgcc tttacgaaat ttgtaaaatt gttttctgta      4260
     aatacgacaa gcactaaaga agtcaacaca tgtttttcaa agtattttca attttatagt      4320
     cgtccacgta gaattattag cgatagagga acgtgtttta catcattaga atttagtaaa      4380
     tttttgttag aaaataatat agagcacgtg aaagtggcaa ctgcttcacc ccaagcgaat      4440
     ggtcaggtag aacgggttaa cagaactatg aaagctatgc tcgccaaaat aactgagcca      4500
     ataaatcacg aggattggag caaactttta ataaaggctg aatatgcaat taataactca      4560
     gtccattcga ccacgaaaga attgccttca gtgttgttat tcggagtcca acagaggggt      4620
     tgtaatattg acgcgttaac agaatactta gatgataaac aagaccgaac tcaaagcgat      4680
     ttagaatcag tacgtaagaa atctttggat aaaatcgagc attgtcagca gaagagtgaa      4740
     gagtattttg aaaggaatca caaaaatcat attgagttct tggaaggcga tttcgttgta      4800
     atgagaaaca ttgacaccac aataggtaca aataaaaaat ttgttccgaa gtacaggggt      4860
     ccgtacatca tcaagaaggt attgccgaac gacagatatg tgttaaatga cattgaaaac      4920
     tgccaaataa gccaaatccc gtatgagggc attatagagg catgccgatt aaggaaatgg      4980
     gcagattggc gtaatcagtg tgaaagtgac ccctacttaa atagttaaca aaatatatat      5040
     atacacatat aattaaaatt actcttaatt acatatttac gatcgagggc gatctaattg      5100
     tcaggatggc cgagc                                                       5115
//
ID   Gypsy19-I_Dya repbase;    DNA;    INV; 6721 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy19_Dya;
KW   Gypsy19-LTR_Dya; Gypsy19-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6721
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1113-1113 (2009).
XX
DR   Genome; chrU; Positions 1334210 1327490.
XX
CC   Positions [2270-2776] - Reverse transcriptase
CC   Positions [4121-4606] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           299..5014
FT                 /product="Gypsy19-I_Dya_1p"
FT                 /translation="MKYSVILNLTMEELAKWLSEKRVPLTGEETIHQLRGM
FT                 VKAMVVDQDNAIKEGGEPIGADGVAESVAGSAAVSVAESVAGSAAVSVAES
FT                 VAGRESEQEERVSDELTEITKQMTLYTARKDLAELKAKVAALEGNSLDRKP
FT                 VVEIRDLEANLRKFSGDDNMSVHAWIRDFGLAAVMYGLDSSQRWTLGSRML
FT                 EGSARSYIMLEKPATWNELSESLRKTFGCQMTNHQVAKQLQSRSIRVNESL
FT                 LQYFIAMRHIAEQGTFEDVDIVKYIVDGLQDHTGCAAPLYYCASLEELREK
FT                 MIRYQMVQTENRRRTPVTPLRQVTVAKPAHAGGDVGSIRCFNCRAMGHFSS
FT                 QCKKPKRPEGACFHCFETGHHYRRCPKRLQAAAPCNDDMLDEKEDDDDSTG
FT                 RNPYIQLVSIQLLSKEGCIDIDNIFALLDTGSPVSFINRELIPQELKDDQL
FT                 KKSRFRGLSGQNVLTFGKIKIVLLFQEEYYSIEAYVIPNNILPTPILLGRD
FT                 VLRKLSLKLVKRKNVIKKNLNQLSLNKTKALSSNPICASLFTSTYYPNNNI
FT                 TESKDRNPYVNAVATPVKPQIFQEWMQQYENCRISTGDDVVQVGSEFGRAS
FT                 LQECREIIQNQYINKFSKSFSEPKYRMGIRLTDSTPFYCAPRRLSYREREI
FT                 VSETVNDLLANRIIRPSNSPYASAVVLVKKKDGNVRMCIDYRGLNKKTARD
FT                 NFPLPLIEDCLEYLEGKSVFSVIDLKSGFHHIGVEAESVKYTAFVTPDGQF
FT                 EYLRMPFGLKNGPAVFQRFISDALRDFVKNRQIVVYMDDIILASYSVEEHK
FT                 SILARLLDRLVEFNLEINLKKSSFLQKRIDYLGYDVSVQGILPNDTHLTAI
FT                 KQYPEPINSKTLHSCLGLFSYFRKFVPNFSRVARPLTDLLRKGGPFPMSCS
FT                 EKDAFLQLRTALSSPPVLSIFNPLYETELHTDASSHGFGAVLLQRQPDNKL
FT                 HPVFFYSRKATAAESRYHSFELETLAIIYALRRFRIYLEHKPFLIVTDCSS
FT                 LVQTLSKKAINPRIARWSLELESFNYSIAHRPGSNMAHVDALSRQTELLRE
FT                 VEGISDPCPIPSRDIEPCKPYGSSEPSEPCKPCGYSEACRPCEPSEPCKPC
FT                 ELSESRGTKRSFQPTTCDVPCNRKKCVKSVRFAPETENIIGIVGASPYDID
FT                 LLLQTEQIRDSEIRRVREKLENGEVENFVLIDGIVYRSKDNEKMCMYVPSR
FT                 MQEDLIRKFHEKLGHFATDKCVNKMREKYWFPGMRSKVDLFIKNCLPCILH
FT                 SVPKSIHNRTLHSIPKVPVPFDTIHIDHLGPLPSINSKRKHLLVIIDAFTK
FT                 FVKLYPVNSTSTKEVNCSLEKYFEYYSRPRRIISDRGTCFTSFEFQEFLES
FT                 RNIDHIKVATAAPQANGQVKRVNRVLTPMLGKLSEPLNQADWYKLLNRVEF
FT                 AINNSVQCSTGKTPSMLLFGCEQRGPVVDELTEYLEEKFSQEKPQCLDTVR
FT                 AEASENIRQSQIRNETAYGLKHRAPALYKVDDFVAIRNVDASAGHCKKFAP
FT                 KYRGPYRVNRVFPNDRYEITDIDNCQLTQLPYKGILEAARLKPWLQVCNKT
FT                 IGLCL"
XX
SQ   Sequence 6721 BP; 2132 A; 1233 C; 1510 G; 1836 T; 10 other;
     atgattacgt gtgtaaacat cccattttga accgcgcgcc ttagtgtaac caaattgtat        60
     aatgttacga tatcgatata aagtgttatc gatctaaata gaattaaggt agattataag       120
     aataaagaaa taaggtcact ttttgatttc tggagaaaaa cgaccgacgc gcaaataaaa       180
     taacaaaaga aaaatcaaat aaaataaaag caatccggcg ttaaattatt ataaaataaa       240
     acctggagta ttacaaatca ggtgtggggt tcgcccaaag taatatttcg gcttgagaat       300
     gaagtattca gtcattctta atctgacaat ggaggagctt gcaaaatggc tttccgagaa       360
     gcgagtgccg ttgaccggcg aggagaccat tcaccagctg cggggaatgg taaaggctat       420
     ggtggtagac caggataatg ccataaaaga aggcggagag ccgatcggag cggatggcgt       480
     ggcggagagc gtcgcgggaa gcgccgctgt gagcgtggcg gagagcgtcg cgggaagcgc       540
     cgctgtgagc gtggcagaga gcgtcgcggg aagagagagt gagcaggagg agcgggtgtc       600
     ggacgagttg accgaaatta cgaagcagat gacgttgtat acagcacgaa aggatctcgc       660
     ggagttgaaa gcgaaggttg ccgccttgga aggcaattcg ctggaccgca agcccgtggt       720
     tgagatcaga gaccttgagg caaatttacg aaaattttcg ggagacgaca acatgtctgt       780
     gcacgcatgg attcgtgact tcgggctggc tgcagttatg tacggactgg acagctctca       840
     acgttggaca ctgggaagtc gaatgctgga gggatcggct cgctcataca ttatgctcga       900
     aaaaccggct acttggaatg agctaagtga aagtctgcga aaaacttttg gatgccaaat       960
     gacgaatcac caggtggcaa agcagttgca gagccgttct attcgtgtga atgaatcgct      1020
     gctgcaatat ttcattgcaa tgcgtcatat tgccgagcaa gggacctttg aggacgtgga      1080
     catcgtaaaa tacatcgtag atggtctgca ggaccatacc ggatgtgcag ctccattata      1140
     ttactgtgct tccctcgaag agctgcgtga gaagatgata cgataccaga tggtacagac      1200
     ggagaacagg cgaaggacac cagttacacc attgaggcag gtgactgtag cgaaacctgc      1260
     gcatgctgga ggagatgtcg ggagcataag gtgcttcaat tgccgagcga tgggacactt      1320
     cagcagccag tgtaagaaac cgaagcgccc ggaaggcgct tgcttccact gtttcgagac      1380
     tgggcatcat tatcgacggt gcccgaagcg tttgcaagcg gctgcccctt gtaatgacga      1440
     catgctagac gagaaggaag acgacgacga ttcaactggc agaaatcctt atattcaatt      1500
     agtaagcata caattactta gtaaagaggg gtgcattgat attgataaca tttttgcgtt      1560
     actagatacc ggaagcccag tgagctttat caacagggaa cttattccgc aagaattgaa      1620
     ggatgatcag ttgaaaaaaa gtagatttcg cggcctgagc ggccaaaacg ttttgacatt      1680
     tggaaaaatt aagattgttc ttttgtttca agaagagtat tacagcattg aagcctatgt      1740
     aattcctaat aatatattac caacgcctat attactgggc agagatgtac ttagaaagtt      1800
     atcacttaag ttagtcaaac gcaaaaatgt tattaaaaag aatctcaatc aattatcatt      1860
     aaacaaaacc aaagcattat cctcaaaccc aatctgtgca tccctattta ctagtacata      1920
     ttacccaaac aataatataa ccgaaagtaa agataggaat ccatatgtaa acgcagttgc      1980
     aactccggtg aagcctcaga tctttcaaga atggatgcaa cagtacgaga attgtagaat      2040
     atcaactggg gatgacgtag ttcaagtagg cagtgagttt ggtcgcgcct cattgcaaga      2100
     gtgtcgtgaa ataatacaaa accaatatat taataagttt tccaaaagtt ttagtgagcc      2160
     aaagtataga atgggcattc gtctcactga ttctacacca ttttattgtg cccctagaag      2220
     gttgtcatat cgtgagagag aaatagtttc cgagaccgtt aatgatctgt tagccaacag      2280
     aattatccga cctagtaatt cgccgtatgc ctcagctgtg gttttagtta agaaaaaaga      2340
     tggaaacgta aggatgtgta ttgattaccg cgggttaaat aaaaagaccg ctagagataa      2400
     tttcccgtta ccccttatcg aagattgctt ggaatacctt gagggtaaat ccgtgttttc      2460
     agtcatagat cttaaaagtg gctttcatca cataggtgtt gaagctgaat ccgtgaaata      2520
     taccgcattc gtaactccgg atggtcagtt cgaatacttg agaatgcctt ttgggcttaa      2580
     gaatggtcct gccgttttcc aaagatttat ttccgatgcc ctgagagact ttgtaaaaaa      2640
     ccgtcagatc gttgtttata tggacgatat tattttagca tcatattccg tagaagagca      2700
     taaaagcata ttagccagat tattagacag gctcgttgag tttaaccttg aaataaattt      2760
     gaaaaaaagt agttttctgc agaaacgaat agattaccta ggttatgatg ttagtgttca      2820
     aggaattttg cctaacgata cacatttaac tgctataaaa caatacccgg aaccgattaa      2880
     tagcaagacc ttgcattcct gtttaggttt attctcttat tttagaaagt ttgttccaaa      2940
     tttttcgcgt gtagcaaggc ctttaactga cctacttaga aaaggggggc cattccccat      3000
     gtcgtgttcc gaaaaggatg cattcctgca gttaaggaca gcgttatcga gtcctcccgt      3060
     cctgtcaatc tttaatcctc tttatgaaac cgaattgcat acggatgcga gttcccatgg      3120
     atttggggct gttttattgc agcgacagcc ggataataaa cttcaccctg ttttctttta      3180
     ttcaagaaag gccactgcag ccgaatctcg ttatcatagt tttgaacttg agaccttggc      3240
     aatcatatat gccctgcgcc gttttcgaat atatctggaa cataaaccct ttttgatagt      3300
     aaccgactgt agttccttag ttcaaacctt gagtaaaaag gctataaatc cccgtatcgc      3360
     ccgttggtcc cttgagttgg aaagttttaa ttattctata gcccataggc cggggtcaaa      3420
     catggcccat gtagatgcgc ttagtaggca aacagagttg ctaagagagg tggagggaat      3480
     ttccgatccg tgtccgattc cgtcaagaga tattgaacct tgtaaaccgt atggatcttc      3540
     tgaacctagt gaaccttgta aaccgtgtgg atattccgaa gcttgtagac cgtgtgaacc      3600
     tagtgaacct tgtaaaccgt gtgaactttc tgaatcccgt ggaactaaga gatcttttca      3660
     acctacgaca tgtgatgtac cttgtaatcg taagaaatgt gttaaatccg ttaggtttgc      3720
     cccggaaact gagaatatta ttggaattgt aggtgcgtcc ccttatgata ttgatttact      3780
     gttgcagacc gaacagataa gggattccga aatacgtcga gtgcgagaga agttagagaa      3840
     tggtgaagtt gaaaattttg tgttgataga tggaatagtg tatagatcga aggataatga      3900
     gaaaatgtgc atgtatgttc cgagccgaat gcaggaagat ttaattagga aatttcatga      3960
     aaaattggga cattttgcga cagataagtg tgttaataaa atgagagaaa aatattggtt      4020
     tcccggtatg agaagtaagg tcgatttgtt tataaagaat tgtctaccgt gtattctaca      4080
     ttcagtcccg aagagcattc ataatagaac gcttcatagt atacctaaag ttccggtccc      4140
     gtttgatacg atacatattg accacctagg tccccttccg tctattaact cgaagagaaa      4200
     gcatttgttg gtgattattg atgcgttcac gaagtttgtt aaattatatc ctgtcaactc      4260
     caccagtact aaggaggtaa attgttcatt agaaaaatat ttcgaatact atagtcggcc      4320
     ccgtagaatc atttccgata gaggcacgtg tttcacttcc tttgagtttc aagagttcct      4380
     cgagtccaga aatattgacc atattaaggt agctacggcg gcccctcagg caaatgggca      4440
     agttaagcgt gtgaaccgtg ttctaacacc aatgttggga aaactatcag agcccctaaa      4500
     tcaagccgat tggtataagc tgcttaaccg tgttgaattc gctataaaca attccgtgca      4560
     gtgtagtacc ggaaagaccc ctagtatgtt gttatttgga tgtgagcaac gtggtccagt      4620
     agtagatgag cttaccgagt atttggaaga gaaatttagt caagagaaac cgcaatgtct      4680
     agacaccgta agggccgaag caagtgagaa tattcgtcaa tcacagatcc gaaatgaaac      4740
     agcatacggc ttaaagcata gggcaccggc gttgtacaag gtagatgatt ttgttgctat      4800
     tcgtaatgtt gatgcgagtg caggacattg taagaagttt gcacccaagt atcgtggccc      4860
     atatagagta aaccgcgttt ttcctaatga ccgttatgaa ataactgata tagacaattg      4920
     tcagctgacg caactcccat ataaggggat ccttgaggct gctaggctta aaccatggtt      4980
     gcaagtgtgt aataaaacta taggattatg tttatgatcg aggtcgatca aatgtcaggt      5040
     tgcccgaatg taaacatccc attttgaacc gcgcgcctta gtgtaaccaa attgtataat      5100
     gttacgatat cgatataaag tgttatcgat ctaaatagaa ttaaggtaga ttataagaat      5160
     aaagaaataa tgtcacgcgc aaataaaata acaaaagaaa aatcaaataa aataaaacca      5220
     atccggcgtt aaattattat aaaataaaac ctggagtatt acacgtgcaa taaattaggg      5280
     agttccatag tcttcttgta agagcagcca gcctgtataa tttttggagg atggggcaga      5340
     ggattatgat tatgactact gttggcttac tagagcaatg aaagagactt gatgaggatc      5400
     aaagaattga tggaatcctt tagtgacata gtgacatctc tgacatgtat aacttagact      5460
     ttaagttgaa cctcgaaaaa aggaagtacg tacagtacac cgatgtttga aaaaccgtgg      5520
     gaaaccatgg cgaagcacat ccgttaaatt catttctcag aacgtaagag ttatctacgt      5580
     atccgtatga ccaaccaaac tgaaccagga tgccagaact gcttacacgg ttacatgttt      5640
     ggctttgtgt gtgactaata agtcactcat gcatgtcccg attctagtga cgacgctaac      5700
     cccacggtat ttttttccac ggtgttcgcc aggcaagacc aggaaacccg acggactggg      5760
     acctcgtcat ttccgtagat gtatttaagc ccaagcaaat atagcttcac aagaatctaa      5820
     atatgcatta gtccgggacc acattatcaa caattcaaaa gaaggagatg acatacagga      5880
     cacccgaaag atacaaaagt tttatgataa cagagcagaa cattgacagc tcaaagagaa      5940
     aatgctggac agagtggaaa gcgtacgcag cgtactagta gatacaggtg ctagcgctat      6000
     ttctattggc aaaggagcaa aataattatt aaaacgaacc cagtcaataa cacagtactc      6060
     acatacctaa ctcgcaattc aacgtgccga aacggtttca aaagagtaaa ttgcgcaatg      6120
     tttagcgttg tttatgttgt atgcgaaatg agtgaaattc aatccaaagc ggaatggata      6180
     gaatgagtaa atgcagagta aatgtttaga gaactcggat aaaattttgg aaaattagtc      6240
     gttcatggct tgcataggcg atgatgagaa tacagagctc gaacgaaagc gcaagctctt      6300
     agtaaattgc gtacatatgt acaacataat atatgtaaat acataatata tctgtaaata      6360
     gaataactca ttaataatat agcattttca gatgctagaa atttatttaa tttaacaatc      6420
     taaactataa ataaattatg tttctgcatt cagtaattta ttaatccatg ccttttattt      6480
     ttttatgtct tgtattaaaa agcaagacaa aaaagaaaaa acaaatacgc aataaatttg      6540
     acgtagccaa tgcggtgcac agttaaccgt ctcggttatt ctgttattat ttgtgcattg      6600
     cttcgccgtt cgaatatagt aaatttttta ctcatgcctt taccacattt gtcaaattcg      6660
     ttttactcta tgtctcactc agtcagtcag aactttgagt acgagnnnnn nnnnnattag      6720
     t                                                                      6721
//
ID   GYPSY19-LTR_AG repbase;    DNA;    INV; 136 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY19-LTR_AG is an LTR of retrotransposon GYPSY19_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY19-I_AG; GYPSY19-LTR_AG; GYPSY19_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-136
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY19_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 4-4 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY19-LTR_AG is a long terminal repeat of GYPSY19_AG (its
CC   internal
CC   portion is deposited as GYPSY19-I_AG).
XX
SQ   Sequence 136 BP; 41 A; 32 C; 29 G; 34 T; 0 other;
     tgtcatatac gtctgacagc tgtccatcga cagaaactgc tagttgggta gcaaacagct        60
     gtcagtgaga ataaacggca ctctgtgtct gaactacgaa cgaaacacat gtgtcttcct       120
     tccacgagtt ataaca                                                       136
//
ID   Gypsy19-LTR_Dpse repbase;    DNA;    INV; 325 BP.
XX
AC   Unknown_singleton_87;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy19_Dpse;
KW   Gypsy19-I_Dpse; Gypsy19-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-325
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1114-1114 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions    2809    2485.
XX
SQ   Sequence 325 BP; 108 A; 48 C; 63 G; 106 T; 0 other;
     tgttaggttg ttttagtatt ataactctac atttgtattt accttgctgc tagcttataa        60
     ttattagtgt taatctacaa ttgtatttac tattaacgtt gtacgaaata tcgtaagtat       120
     ctgaataagt atcgatatga ataatcatcc gatagttcta gttctgcgaa ctagaactat       180
     gcgagaacta gatcggaata gaaccagaga tcggagctgg gttcaatgag cacttttgcg       240
     gtatcaacag gacagagtgg ttggtaaaga attaagtaaa ataaaatcat aaaaagtacg       300
     aaacatccgt gtactttctg cgcca                                             325
//
ID   Gypsy19-LTR_Dya repbase;    DNA;    INV; 533 BP.
XX
AC   chrU;
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   19-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy19_Dya;
KW   Gypsy19-I_Dya; Gypsy19-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-533
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1115-1115 (2009).
XX
DR   Genome; chrU; Positions 1327489 1326957.
XX
SQ   Sequence 533 BP; 179 A; 104 C; 109 G; 141 T; 0 other;
     tgcttgattt tatttttggg cctaagtaca tttgtgtcat aagggagact ttttgattgc        60
     actttcaacc tttttatctt attattacca gtagttctca cctacattcc ttgttgaaaa       120
     aattctaagg aaaacatacc ccaattcctt aatacttaaa ggtggcagcc gatcacggac       180
     acagagagcg gtgcatcaca aagtgcgacc gcgggagaaa cacagactgt atgatactca       240
     tgatagggag agtttggaaa acttaaggac agattatgcc cgaaaactct gccgatagct       300
     ctttgagaca tcaagacacc agatgcctta attaagtgag cacagaggaa cagaaaccat       360
     gcatcatatg cctttgaagc tgtgaccagt tcccaatttc actccgaact atattggaat       420
     caaacatttc gaattctagt tgcaaaggta atttaccagg aattcaaaat ctatggaacc       480
     ggcagagggg aaaaagggac tgataaaggt caagaattaa tggaacaaaa gca              533
//
ID   GYPSY2-I_AG repbase;    DNA;    INV; 5178 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   20-SEP-2005 (Rel. 10.10, Last updated, Version 3)
XX
DE   GYPSY2-I_AG is an internal portion of the GYPSY2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   AP protease; GYPSY2-I_AG; GYPSY2-LTR_AG; GYPSY2_AG; Gypsy clade;
KW   gag; integrase; reverse transcriptase; GYPSY51-I_AG;
KW   GYPSY51-LTR_AG.
XX
NM   GYPSY2-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5178
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 75-75 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY2_AG is a family of Gypsy-like LTR retrotransposons.
CC   GYPSY2-I_AG, an internal portion of GYPSY2_AG, is flanked by
CC   GYPSY2-LTR_AG LTRs. The GYPSY2-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 20 copies; they are
CC   ~1% divergent from the consensus sequence.
CC   The consensus sequence encodes the 1408-aa Gypsy1_AGp polyprotein
CC   (predicted by FGENESH) and composed of the putative gag-like
CC   (pos. 1-300), AP protease (pos. 325-410), reverse transcriptase
CC   (pos. 514-681), and integrase (pos. 1030-1200) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(846..1790,1875..5153)
FT                 /product="GYPSY2_AGp"
FT                 /note="composed of the putative gag-like (pos.
FT                 1-300), AP protease (pos. 325-410), reverse
FT                 transcriptase (pos. 514-681), and integrase (pos.
FT                 1030-1200) domains."
FT                 /translation="MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPV
FT                 PNTPRVPGPSACDAMFMPPESQIDTLNAMQLKPPEMDTTDIQTFFFALENW
FT                 FDAWNITTNQHIRRFNILRTRIPLRVLPELRPLLENIRQYATDRYEVAKRA
FT                 IIEHFEESQRSRLHRLLAEMNLGDRKPSQLLAEMRRAANGAMTDSMLVDLW
FT                 IGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRNE
FT                 DFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHC
FT                 YYHTQYGQAARNCRAPCSFNNRRYRLVITDPKTNIKFLIDTGADVSVIPRQ
FT                 HSSVPSKPSTMKLFAANSTPIQVYGESLYTLDLGLRRSFLWNFIIADVGTA
FT                 IIGADFLQHFHLLVDLRKKCLVDALTNVRSTGVPSQNPSEPTVKVCDSTSP
FT                 IATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQPTFARPRRLPPEKYAAA
FT                 RKEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRALNAKTVPDR
FT                 YPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAITTPFGLYE
FT                 FTTMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSEAEHHEHLR
FT                 QLFERLEKHQLAINPAKCEFYRNEISFLGHLVNASGIRPLPDRVQAISELP
FT                 QPTTIMELKKFLAMINYYRRFLPHALETQGILLEMTPGNKKKDRTPLTWSL
FT                 EASEAFAQCKEQLKRATLLAHPVKNAELSLWTDASDFAAGAVLHQRTNEDL
FT                 QPLGFFSKRLEKAQQKYSTYDRELTAIYLAIRHFRYQLEGREFCIYTDHKP
FT                 LTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADLLSRIETVH
FT                 ATPTIDYERLAEEQERDPELSDILSGKIQTDLFLQKTPIPGSPKSLYADCP
FT                 GGIIRPYITRSFRTQLLHAVHDLSHPGARATARLITERFVWLNARKESQDF
FT                 ARNCLACQRAKVGRHVKSPLIPYPATTARFSHINVDIIGPFPISNGNRYCL
FT                 TIIDRFTRWPEAIPISDITASTVVSALLFHWIARFGVPAHVTTDQGRQFES
FT                 SLFKELTKALGTKHIRTTAYHPQANGIIERWHRTLKAAITCKDTARWSEHL
FT                 PLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQNALADQSDFAK
FT                 TLEETMSSIRPQSTAWHTNRTPFVHSDLNKCTHVFIRDDTVRPALTTPYHG
FT                 PYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQCSWEGLTT
FT                 NLLPPTTDHSETLPLPDVQANSDRRDATAASKPTSREQPVRNQTTPAPPSH
FT                 PTTSRQTDRAAVDAPPPSILRRNDQTVSTGVTRSQRKVIIPLRYR"
XX
SQ   Sequence 5178 BP; 1352 A; 1631 C; 1174 G; 1021 T; 0 other;
     actggtgacc ccgacgtgat cgcgtgcgcg agtgagtgag tggtaacctg acgaacaccg        60
     tgtccagccg agaaaaaacg tgtttccatt gttccacggt ccggaccgac ggcaacgttc       120
     ccccccatca tcgaggagcg gccgaccacg aaggaggcac cacgcaagcg cagccagcga       180
     aaaaaaaccc cgtgcacaaa ccccgaaccc acgtgagtgc aaatcgacac cgaaggtggc       240
     cgacagtgag gaacactgtt caggaacatt tttacccgac ggagcgaccg atcctagcgg       300
     aaaagtttcc tctcggtgct gagcgatcgc cgaacatttt gctgacacac cccgcgccgt       360
     gtcgcacacc cgccgagcat tttggtaccc gtacgtgttt gcgcacccgc cgatcataac       420
     ctcacacgta ccgccgagcg cgctccagac ccacgcggtt tttgtgtgtg caccgtgtgt       480
     gtgtgtgtgt gtgtgggtga atgtgcgcag gccgacgccg agcggattgc gtcagaattt       540
     tgctcgagct acgttcgtca tttttttcga ccgtgcaccg aagacgtcgt cagcgcacgc       600
     agccatcgtt ctcttctcgc cgacaccacc gaccgaacgc caccgaagat catcgcccct       660
     cgtttctcac accaccggcg tcatcgacga acgcagccaa cgagcgacta atcctaacac       720
     gatcgaccgc gtgtgcggat ttttcgtcgc cgaaggatcg acctagccaa cctccagctg       780
     gacttgcttg cgcccccgcc actaaggtaa gatccaccct tttttaacta accttagtcg       840
     taaggatgtt gcacagtccg ccggtccgcg acgtatcgac tcccgatggc gtaaccccga       900
     gtgccgatcc agccgcgagt ggatccaaat cgcctcacgt accaacaccg cccgttccga       960
     ataccccgcg cgtaccaggg ccgtccgcct gcgacgccat gtttatgccg cccgaatcgc      1020
     agattgacac tttgaatgcc atgcagctga aaccaccgga gatggacacc actgacattc      1080
     aaaccttttt cttcgcattg gaaaactggt tcgatgcgtg gaatatcacc acgaaccaac      1140
     atattcgccg ttttaacatt cttagaacgc gtataccgct tcgtgtcctt cctgagcttc      1200
     gccccctgtt ggagaacatt cgacagtacg ctacggaccg ttacgaggta gcaaagcgtg      1260
     caataattga gcactttgaa gagtcgcaac gaagccgctt gcatcgtctg cttgccgaaa      1320
     tgaacctcgg ggaccgaaaa ccatcgcagc tattagcgga gatgcgccgc gccgcaaatg      1380
     gagcaatgac ggactctatg ctggtagatt tgtggatcgg ccgtctcccg ccatacgtcc      1440
     agtccgccgt tattgccact aacacggata ccaacgatcg agctaaagta gcagactctg      1500
     ttatggattc gttcgcgtta taccaccgaa cgggcccgta ccaaaccatc cacgaagtac      1560
     gcaacgagga cttcgaacgt ctttctcggc acgtaacgga attaggtcag cgcttggacg      1620
     ccgtactgag caagctcaac gaacgagaac gcgcgcgacc acgctcacgt acccggcaac      1680
     gtcaaccgaa ccaggatgcg gtaacaccca gcggacactg ctattaccac acgcagtacg      1740
     ggcaagcagc gcggaactgt cgtgccccct gctccttcaa caatcggcgg cagggtagta      1800
     actcggccac tgcttccgat tgacgcttaa ccagaggcca acctcaacag atacacgtac      1860
     tttcgaccca tagctatcgt ctcgtaataa ccgatccaaa aactaacatc aaattcttaa      1920
     tcgataccgg tgcagacgtt tcagtaatcc ctcgacaaca cagttccgtc ccgagtaaac      1980
     cctccaccat gaagctgttc gccgctaatt ctacaccaat ccaggtttac ggagagtcgc      2040
     tctatactct cgatttggga cttcgccgat ctttcctttg gaacttcatc atcgcagacg      2100
     tggggacagc gattattgga gccgattttc tccaacattt ccatctgctc gtggacttgc      2160
     gcaaaaaatg tcttgtcgac gccttaacga acgtacgttc taccggagtg ccgagccaaa      2220
     acccgtcgga accaaccgta aaagtatgtg attccacctc accgatcgcc actctcctaa      2280
     aggaatttcc cgggttaact gcactatcca ctcctggcac cttactgcag tccgaagtga      2340
     cgcaccgaat cgaaacgacg gggcaaccaa cattcgcaag acctcgccga ttaccacccg      2400
     aaaagtacgc agctgcccgc aaagagttcg aatcactcgt ccagctcgga gtgtgccgcc      2460
     cctcgaatag cagctgggcc agcccgctac atatgacaaa aaaggccgac ggcacctggc      2520
     gcccttgtgg tgattaccgc gccctaaatg caaaaaccgt acccgaccgt tatccactac      2580
     cgtttttaca ggacttcacg atgcatttgc aagacaagat catattttcc aaggtcgatt      2640
     tgcacaaagc ataccaccag ataccaattc atccggatga tatagcgaag acagccatca      2700
     cgacaccctt tggactttac gagttcacta ccatgccttt cggattgagg aacgcagcgc      2760
     aaacattcca acgccttatc catgatgtcc tacgaggact cgagtttgtt ttcccgtata      2820
     tcgacgatat gatcgtagca tcaacgtccg aggcagaaca ccacgaacac ttacgccaac      2880
     ttttcgaacg attggagaag caccaactag ccatcaatcc agccaagtgc gagttctacc      2940
     ggaacgagat ttcctttctg ggccatctgg tcaacgcttc tggtattcgt cctctccccg      3000
     atcgagtcca agccatcagc gagctgccac agccaacgac gattatggag ttgaagaagt      3060
     tcctcgccat gataaactac taccgacgtt ttctgccgca cgccctggaa acgcaaggta      3120
     tacttctcga gatgactcca ggtaacaaaa agaaggacag aacgccatta acctggtcgc      3180
     tagaagcttc cgaagcattc gcccaatgca aagagcaact gaaacgtgca acgttattgg      3240
     cacatcccgt gaagaacgcc gaactttctc tatggaccga cgcttcagat ttcgcagccg      3300
     gagccgtact tcaccaacgc accaacgaag acctgcaacc actaggcttc ttctcgaaac      3360
     gtctcgaaaa ggcacagcaa aagtactcga cctatgaccg agaacttacc gccatctatc      3420
     tcgccatacg acacttccga taccagctag agggtcggga attctgtatt tatacagacc      3480
     acaagcctct aaccttcgcc ttccgacaaa cgcacgacaa tgcctcacct cgacgagccc      3540
     ggcagttaga cttcattggc cagttttcca ccgacatccg tcacatcgcc ggaaaagaca      3600
     acgttacagc cgatctgctc tcccgcatag agacagtgca cgcgacaccg accatcgatt      3660
     atgagcgatt agcagaagaa caagagcgcg accctgaact ttccgacatt ctcagtggga      3720
     aaattcagac ggacttgttc ctgcagaaga caccaatacc gggaagcccc aagtcactct      3780
     acgccgactg ccctggaggt atcatcagac cgtacatcac ccgatcgttt cgaacacaac      3840
     ttctccacgc cgtacatgat ctcagtcatc ccggagcccg cgccacagct agactaataa      3900
     cagagcgttt cgtgtggctc aatgcaagga aggaatccca ggacttcgct cggaactgct      3960
     tagcctgcca gcgcgctaag gtaggaaggc acgtcaaaag ccccttgata ccgtaccctg      4020
     caacaacagc gaggttcagt catatcaacg tagacatcat tggaccattt cccatcagta      4080
     acggtaaccg atactgcctt acgataatcg accgatttac tcgctggcca gaagcaatac      4140
     cgatctcgga tatcaccgca tctaccgtcg tatcagcact actattccac tggatcgccc      4200
     gattcggagt tccggcgcac gtaacaacgg accaagggag acaattcgaa tcctccttgt      4260
     tcaaagagtt gacgaaagcc ctaggaacga aacacatccg tacgacagcc tatcacccgc      4320
     aggcaaatgg aataatcgag aggtggcacc gcactcttaa agcagcaatc acctgcaaag      4380
     acaccgcaag atggagcgaa cacctaccgc taatactgct tgggctacga accacgttca      4440
     aaaatgacat caacgcctcg ccagccgaac ttgtgtatgg aacgacgttg accatcccgg      4500
     cagaattctt catcgcgaaa ccgcaaaatg ccctcgccga ccaatccgac ttcgccaaaa      4560
     cgttagagga gacgatgagc agcattcgac cacagagcac cgcttggcat accaaccgca      4620
     caccgttcgt gcattccgat ctgaacaagt gtactcacgt gttcatacgc gacgacaccg      4680
     tccgacctgc actaactaca ccttaccacg gtccatataa ggttcttaca cgcaatccta      4740
     agtcttttca gatactccta cgtggacagc caacgctggt ttcgatcgac cgcttaaaac      4800
     cagcgtatgg cgcagaagag gaagccaccc cggccccgca gtgctcgtgg gaagggctaa      4860
     cgacaaacct gctgccgcca acaaccgacc actcggaaac tctgccgtta ccggacgtcc      4920
     aggcaaattc ggaccgcaga gacgccaccg cagcctccaa accgacgtcg cgcgaacaac      4980
     cagtgcgtaa tcagacgaca cccgcaccac catcgcaccc gacgacatcg agacaaaccg      5040
     accgagccgc cgtcgacgcc ccaccaccct ccatcctacg ccgcaacgac cagacggtat      5100
     cgaccggcgt caccaggtct cagcggaagg tcatcatacc tctacgttac cggtgacacc      5160
     gctctaggag gggagtac                                                    5178
//
ID   Gypsy2-I_AP repbase;    DNA;    INV; 4474 BP.
XX
AC   Contig39744;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2AP;
KW   Gypsy2-I_AP; Gypsy2-LTR_AP.
XX
NM   Gypsy2-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4474
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 439-439 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3573-4085] - Integrase core
CC   LTRs are 91% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1696..3270
FT                 /product="Gypsy2-I_AP_1p"
FT                 /translation="MADVSRSIIGADFLHYFGLLVDVRHQRLVNPADKRTV
FT                 TCAVTPTPSARTTLLTVARSPDWDRLLQDFPGVTRESPVPESFQHRVEHVL
FT                 KTKGPPLFARRDFELMQKQGICRPSSSAWASPLLLVPKKDGSFRPCGDYRR
FT                 LNSVTVPDRYPLPYLHDFTANLAGKTVFTKLDLVRTYNQVPIAASDVHKTA
FT                 VTTSFGLFEFPVMCFGLCNAAQTFQRLVNIVLAGLDFVFAYVNDVLIASTN
FT                 AEQHVEHVRAVLSRFEEFGIAINPAKCVFAASTLTFLGHVVDAQGLRPNPD
FT                 GVDVIRRWPQPNTKKELQRFLGSLNFYHRFVQGAANVQAPLYDISSAIKKK
FT                 DGPLAWTDAARKAFSACREALVTSTLLVHPQRNALLRLTTDAFNIAVGAVL
FT                 EQSVGNEWQPLGFFSRKLSGAQTRYSAYDRELLAAYLAARHFVHAIEGRFV
FT                 TLRTDHRPLLFMFSQKAEKLIDRQARHVAFLSQYFHEVEHVSRELNVVPDA
FT                 LSRLELLPLDNGLPNLDQWATEQASDTDL"
XX
SQ   Sequence 4474 BP; 1038 A; 1421 C; 1061 G; 954 T; 0 other;
     gcgacgcgat tattaattgt ttcgctctgg tcgtcactaa gtacctatac ctactcaaaa        60
     cgttggaagg ctaaccatga taacggctag ctaaccacat tggtgacctc ttcaagtttt       120
     cccttataag tataggccag acggcccaga gcatcatcat cgtccccttc gctgagtgcg       180
     gcgtgtaggt aagccggctg gtacatacta accagtagac acggaaacct ccgccaaacg       240
     acctcacagc gccttgcctt agtctgcgta agccggccgg tactcagaga ccggtagaca       300
     cggaaacgct acagactacc ccaccaacca acgacgcttg tcgcgttggc caccctgacc       360
     atttttcgtt gcgaacgtcg agccatcgcc gccgacgtcc aacccttcgt aagagtgttt       420
     atcgttgtga acgtcgagcc cttgctgccg ccgtccgatc cgttgtacta caattcatat       480
     ccgatcaatc ctacactgga ccaccaaact accagaccag atccgtgagt tatatgttca       540
     gattcccacc cctgtatgta accccaataa atatttttat tgtaaactct ccggagtata       600
     attagtctaa tctatacaaa aagaaaatat tgtcaaacaa aacatcttaa ttgtattaaa       660
     ttcagatgat gaacagattg gttcaaaata aataaacata catttttacc aaccaattgt       720
     gtttcattac agccttttcc gcgccgagtg ctccagcgcg ttttcgcaat acacgtgtcc       780
     tcttagtgcc tatccgtcgt acgagttgta taactctttt ccgcgttaat cgtcatggac       840
     gtgcaaggta acgcgcctaa caaccagaac gtcgttgaca acgtgaacca agtcgtcgac       900
     gccattgcaa acatgcggct tccggcattt tggaaacgct ccccgaccct gtggttcaac       960
     tacgcggagt ccacgttcat aacgcatcgc gtcactgcca acgcgaccaa agtacatttc      1020
     gtcggcagcg ctctagacga agaagcagtg cggaacatcg gtgaccttct gaacgcggcc      1080
     gccccctact ccgacatccc cgcgcgtctc atcagcgcct atgaggtgcc gacagcgctg      1140
     ctgttccgcg aaatcgtcaa gtccggaggt ttgggtgacc gccgaccgtc gcagccgcaa      1200
     cagcatgcca cccggcatag gcgaagacgc gttgaaagaa ttttggctac agaaactcct      1260
     gtcgaacgtc accgccatcc tcgtgggcct cgacgcaccg ttggacgaac tggccatatt      1320
     atataactgg cgtatttcag acgtgtccaa cctacagagc gtcgatgtcc tatccaagga      1380
     gcagtttagc gaccttgccg gtgcggtgtc cgcgttgtcg caacaaatca agtccctcac      1440
     gaaaatcgtc aactccgcag aagggccctc gcgatcacgg tcacgagcac ccacgagcac      1500
     ccacatcaac gttccggtaa gctgttcctc atcgacacaa gcgccgaaat ttcgctcata      1560
     ccgtacaact acggttcacg ccagcagtcc gatgtgcacc tcacagccgc caacggagca      1620
     cgcatcaaaa cgttcggacc caaaacactt gttcttgacc tcggactttc gcgcccattc      1680
     acatggacct ttgagatggc tgatgtctca cgctccatca ttggcgccga ttttttacac      1740
     tactttggcc tccttgtcga cgttcggcac cagcgcctag tcaatccggc cgacaagcga      1800
     acagtcacct gtgcagtgac acccacaccg tcggcgcgca ccaccttgct caccgttgct      1860
     cgctctccgg attgggaccg acttctgcag gactttccag gcgtgacccg tgagtcaccc      1920
     gtccctgaat cgttccaaca cagagtggaa cacgtcctca aaaccaaagg accacccctt      1980
     ttcgcgcgcc gcgactttga gctgatgcaa aaacaaggga tttgccgacc ttcgtccagc      2040
     gcgtgggcca gccctctgct actagtgccc aagaaggacg ggtctttccg accatgcggt      2100
     gattaccgcc gactgaacag cgtcaccgtt ccagaccggt acccgcttcc ctacctgcac      2160
     gacttcaccg caaacctcgc gggaaaaacg gtcttcacta agctcgacct ggtccgcact      2220
     tacaatcaag tcccgatcgc cgccagcgac gtccacaaaa ctgctgtgac aacatcgttc      2280
     ggccttttcg agtttccagt aatgtgcttc ggcctatgta acgccgcaca aaccttccaa      2340
     aggttagtca acatcgttct cgccggcctc gacttcgttt tcgcatacgt caacgacgtc      2400
     ctcatcgcgt ccacgaacgc cgaacaacac gtcgaacacg tccgcgcagt actcagccgt      2460
     tttgaggagt tcgggatagc cattaacccg gcgaagtgcg ttttcgccgc gagcacgctc      2520
     acctttctcg ggcatgtagt cgacgcgcaa ggcttacgcc ccaacccgga cggcgtcgac      2580
     gttatacggc ggtggccgca accaaacact aaaaaagagt tacaacgttt tcttgggtcg      2640
     ctgaactttt accaccgatt cgtccaaggc gcagccaacg ttcaagcacc gctgtatgat      2700
     atttcctcgg caattaaaaa aaaggacggc ccactcgcgt ggactgacgc cgcccggaag      2760
     gcattctcgg catgtcgaga ggcactcgtt acctctacgc ttttggtaca cccgcagcgc      2820
     aacgcactgt tgcgccttac cacagacgct ttcaacatcg cggtcggggc agtcctggag      2880
     caatccgtcg gaaatgaatg gcaaccgctc ggatttttct cgcgcaaact ctccggcgcg      2940
     cagacacggt acagtgcgta cgaccgtgag ttgctcgcag cctacctagc cgcacggcat      3000
     ttcgtacacg cgatcgaggg caggttcgtc acgctccgca cagaccatcg cccgctacta      3060
     ttcatgttct cgcagaaggc cgaaaaactt atcgaccgtc aagcccggca cgtcgcgttc      3120
     ctatcgcagt atttccacga ggttgagcac gtcagccgcg aactcaacgt tgttcccgac      3180
     gcactgtcac gtctggagtt gctgcccctc gacaacgggc ttcccaacct ggaccaatgg      3240
     gcaactgaac aagcgagcga caccgaccta taggacattc tcaccgggaa gacagagtcg      3300
     tcattaaaac tggacgcgcg gcagacggtg agcggaccga tctatttcga cattgcacat      3360
     aacaggtcga ggcttttcgt cccgttgcga caacgtcgcg cggtcttcaa taccttacac      3420
     cagcaggcac acggcggcag tgcggccaca gctgcgctaa tcgcgcaacg ttttgtgtgg      3480
     cctggtatga accgggaaat acgacggtgg gtcaagacat gtgagcagtg ccaaaagtca      3540
     aaggtacata gacacacatc gacatcgctg ctacgttcgc ggcaccggac cgacgttttg      3600
     gtcacataca tttagacctg gtcggcccac tgcctgtttt ggacggcgct aagtacctcc      3660
     tcacctgcgt cgacagattt acgcgttggc ccgaagcctg gcccgtcgac aacatgtccg      3720
     ctcacaccgt cgcgtccacg ctggtaacaa attggatcac ccgcttcgga gtgccggccg      3780
     tcatcaccac agaccaaggg cggaaatttg agtccgatct aatgcgcgca ctcaactcaa      3840
     ctttcgggat tcaacacatt cgcacgtccc gctatcacct gcaggccaac gggctggtcg      3900
     agcgccttca cagaacactc aaggtagcgc tcaccgtgca agaatcacca cactggtctc      3960
     agcggttgcc catcgtcctc ctagccctac gcaacaccgt caaactggac accggtgcaa      4020
     cacctgccga acttgtttac gggatgaccc tccgccttcc tggtgagcta ttccactccg      4080
     cgccctaaga ggcgaggtcg ccggatttcg tcacggcact caagtcgtcc atggccgagc      4140
     tccgaccgtc acccggatcc aatcacgacc cagcccgtcg tattttcgtg cctacgcagc      4200
     tcggctccgt cagccatgtt gtcgtccgcg tcgacgcgca gcgcgctccg cttcaaccac      4260
     gttacgagag gccctacgcc atgctagatc gaagagaaaa ggatttcaag ctgcagctgg      4320
     gcaaccgaac gtcgtgggtg tcagtggacc gactcaaacc cgccttcgtc ctccgtgacg      4380
     accagtcctg tatcattcgt acgccatgca atccgtggac agaccttcga catcgaaaac      4440
     ctacggcatt ttctcctgcg tcggggggga gtga                                  4474
//
ID   Gypsy2-I_DM repbase;    DNA;    INV; 6739 BP.
XX
AC   .
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 4)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_DM;
KW   Gypsy2-LTR_DM; Gypsy2-I_DM; Gypsy2S.
XX
NM   Gypsy2-I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6739
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 473-473 (2009).
XX
RN   [2]
RP   1-6739
RA   Bao W.;
RT   "Updated with consensus.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
RN   [3]
RP   1-6739
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [2] (Consensus)
XX
CC   99% identical to the consensus.
CC   In reference[3], it was named as Gypsy2S.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..2060
FT                 /product="Gypsy2-I_DM_1p"
FT                 /translation="MANPNNLIRPPVLSSNERPVPVERPDLPERQRVDMNV
FT                 EQLTGLIGQTVAQILPGLIKQMNNDTLDFTDVRDQVVEPEYRNNLGDFDRV
FT                 PDIVKSIREFSGDPAEFGSWKKSVDRIMETYTPFVGTPKYYGILHTIRNKI
FT                 VGSADVALESYSIPLDWNSMSRCLTLHYADKRDITTLEYQMSILVQGRQQS
FT                 VEDFHQDVYKNLSLILNKLSCMQMTRESEHFITKMYRDKALDTFIRGLRGD
FT                 LPRLLAIKEPADLPSALHYCLKLENQTYRSNHATNKGQQSSFRVNEKPIPA
FT                 PRNFQPSNAFGHRQPPPVPPRNFMRGPPQHLGQPFAAPRQHMLNFGNAPFA
FT                 APRQNYQQLQQYNAPPRPFAAKPQPRPEPMDVDRSIQTRNINYMNRPHFDA
FT                 GKRPSGQTTDINKRQRNYNIQTRGMGHPSAKIAGPSSSMTDYQRSMQEYET
FT                 QNDINGTMDEYCNELTDYLNDDEQQQQMHFLD"
FT   CDS           2339..5179
FT                 /product="Gypsy2-I_DM_2p"
FT                 /translation="MGAQIDLGNLTMTLGNGKRIAIKERRFEAVNTISPRI
FT                 DHLGQKQKEKLNRVINNYPGLFADPNQKLTFTTNVKAAIRTTSDTPVYSKF
FT                 YQYPMSLKDEVNKQIAELLHDGIIRPSRSPYNSPVWIVPKKLDSSGKKKYR
FT                 VVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKVFSVLDLKSGFHQIPLKD
FT                 SDIEKTAFSINHGKYEFTRLPFGLKNAPSIFQRALDDILHEHIGKICFIYI
FT                 DDIIIFSKDDETHYKNLDIIFKTLQQANMKCQLDKCEFMKRKVEFLGFVVS
FT                 DKGIETNPIKVQAISDFPIPKTLKELRSFLGLSGYYRRFIPNYAKLAKPLS
FT                 SLLRGEDGRISKTLSSKKSVSLNNEAMEAFKKLKSSLISPDVILHYPDFKK
FT                 EFHLTTDASNFAVGAVLSQENRPISFLSRTLSKAEENYATNEKEMLAIIWA
FT                 LKKLKTYLYGKAKVKIFTDHQPLTHSLSSWNGNARIKRWKSYLEEYDYEIL
FT                 YKPGKENAVADALSRGPTAAQINSVTSTMHSSDSSSHGLIPSVEAPINAFK
FT                 NQIFFRKAESENYSVSIPFPTFHRHLVDRKLFTPDSLLSDLKKYLNPSVIN
FT                 GIFTSQDVMGKIQILYPIHFKGFKIRFTQTEVKDLVTEAEQEEEILRTHNR
FT                 AHRNALENKAQLSERVYFPKMRKKVSAIVSQCLVCKTSKYDRHPTHPEIRE
FT                 TPLPEYPGQIIHVDIYSTERYLVLTAIDKFSKLALGRVIKSKAIEDIRKPL
FT                 RDIVFYYGVPKLIVMDNEKSLNSASIKFMLADQLGIELYKAPPYKSTVNGQ
FT                 IERFHSTLSEIMRCLKGDGTHRSFEELLDRAIYEYNFTVHSVTKKRPLEVF
FT                 FGRGTTASPEQYEQARLDNVDRLRKKQETDIKNYNRTRKPIKTYIKGQEIF
FT                 VRVNTRLGSKLSNRFRKEIVKQDRNTTILTESGKIVHKSNIRS"
FT   CDS           5179..6699
FT                 /product="Gypsy2-I_DM_3p"
FT                 /translation="MITFRILTVVALTNGLIEITNYTDAQTVTIYNGIGQI
FT                 QIGTTRIVHIIDLDHVQLTIGKLTDYIDQDFNDDKSYHLLNYELTQTKNLL
FT                 DTVILAKTRKTRSINLIGTAWKYVAGSPDHDDLVALTDGINDLTDNNNRQV
FT                 IINRQLENRMNLLTDVTTKIQNSIRKDSTLKDELAIRLQNQIRLVKEEIVN
FT                 IKFAIQWARLGVMNTFLLNEFELKEIDSLLKINNMPTSALTVEEMLKLSDV
FT                 SVLHNGTTILYVIKIPILKPTNFLNYQIRPVKKNNNIINLPAKEIFKFKDE
FT                 MYGINAFCKSSNSLKICKDKFISNLSKDLCLPELLNGKQSRCEFANAEHIP
FT                 AIEEIDDGLILLNDFNGTVNWRDIERRLSGTYLITFLNETLKINGREFSNN
FT                 EVASTKPAPPLIQLTPYEVGRLRILSLEVLEQLHLNNTSELRKLRTHSTIN
FT                 RVFGATILMMIAVLIFVTNRCCRRGKKVVLQIDAPGIQTIDAVPKPPQITP
FT                 PTMRFNNIPFF"
XX
SQ   Sequence 6739 BP; 2370 A; 1483 C; 1314 G; 1572 T; 0 other;
     ggcgcccgaa cagggaccag cgaataacgc gtacgacaga caaaattcta agtcgcgaag        60
     caaaataaaa ttttgcaaaa aaaaaattcg ttggttaaat tagtgccgaa gaaactcccg       120
     tgagttaata aaaaattcgc ggtcggcatt tataaaaaaa aaaaaaaaaa aaaaaacttt       180
     tgttttccgg aagaggaaaa tattcaacgg cagaatattg cccatcggtg gatcacatct       240
     tttgtcaggc cagcccgcag aagaccttct ttggagtgct gacgtggatc cccagtagca       300
     caaggcaaaa aggatgacct tcacccagcc aggaggagtg accacagcaa ttttattgtg       360
     agacaagaaa gaaatatttt ttttttatag aatttatttt aagatttaaa aatttaatac       420
     acttgtactt taacatttca tcgaccccag atcggtttcg acagtacatt taatttttta       480
     atttcccttt taatttactt acggttttgg aaaatataat tcaagctcga atagttcgaa       540
     tgatttaaat tgccaagatc ataacactcg tgcctttttg ttttggttaa gatcgttttg       600
     tgtaagtgtt gtccgagtta aaagccaaca tggcaaaccc caataatcta ataagaccac       660
     cggttctcag ttctaatgag agaccggtac ccgtagaaag acccgacctg cctgaacggc       720
     agcgcgtaga tatgaatgtt gaacagttga cagggttaat tggccaaacg gtagcccaaa       780
     ttttacctgg actgataaaa caaatgaaca atgacacact tgactttact gacgtgagag       840
     atcaggtcgt cgagcctgaa tacagaaaca atttagggga ttttgacagg gtacctgata       900
     tcgtaaaatc gatcagggaa ttctctgggg acccagcaga attcggctct tggaaaaaga       960
     gcgttgatag aatcatggaa acttataccc catttgtggg tactccaaaa tattatggta      1020
     tacttcatac cataagaaat aaaattgtcg gaagtgccga cgtggcactc gagtcataca      1080
     gcattccgct ggattggaat tccatgtcaa gatgtctcac tctacattac gcagacaaac      1140
     gagacataac tacactagaa taccaaatgt caattttggt ccaaggtcgc caacagtcgg      1200
     tggaagactt ccaccaagac gtttataaaa atctctcgct tattttaaat aagcttagct      1260
     gcatgcaaat gaccagagaa tccgagcatt tcattacaaa aatgtacaga gataaagctc      1320
     tggacacttt tattagaggc cttcgaggag acttacctcg cctcttggct ataaaggagc      1380
     cagccgatct cccttcagct ttgcattatt gcttaaaact tgaaaaccaa acatacagat      1440
     caaaccatgc aacaaataaa gggcaacagt cgagcttcag agtaaacgaa aaacccatac      1500
     cggcaccccg caattttcag ccatcgaacg cctttggcca tcgacagcct ccaccggtcc      1560
     ctccacgaaa cttcatgagg ggaccaccac aacacttagg tcagccattc gctgcgccaa      1620
     gacaacacat gctcaatttc ggtaatgcac cgttcgccgc accccgacaa aattatcaac      1680
     aattgcaaca atataatgcc ccaccccgtc ctttcgcggc caaaccgcaa ccaagaccag      1740
     aaccaatgga cgtggaccgc agcatacaga cgagaaatat caattatatg aaccgaccac      1800
     attttgacgc cggcaaacga ccgagtggac agactacaga cataaacaaa agacaaagaa      1860
     attataatat ccaaactagg ggcatgggac atccaagtgc caaaatagct gggcccagtt      1920
     caagcatgac agactatcaa cggtcgatgc aagaatatga aacccagaac gacataaacg      1980
     gcaccatgga cgaatattgc aacgaactga cggactactt aaatgacgat gagcaacaac      2040
     aacagatgca ttttttagat tagaagactc ctcactgcca tacttcgaat gtagagtgag      2100
     gagtggaaag gttctaaagg tgttgatcga cacgggctcc aacaaaaatt atattcagcc      2160
     aaaactggtg tcgaatgcaa taccaaatta caagcctttc atagctgcca ctccgggtgg      2220
     cgatataaaa ataacacact acaaaagagc agaccttttt gactgggaaa taaaattttt      2280
     cctcttaaca tctcttacga cattcgacgc aattctcggc aaagacaccc tgaaagaaat      2340
     gggagcacag atagatttag gaaatttgac catgacacta ggaaatggga agaggattgc      2400
     tatcaaggaa cgaaggttcg aggctgttaa tacaatcagc cccagaatag atcacttggg      2460
     acaaaaacaa aaagaaaaac tgaatcgggt aattaataat tatccaggtc tcttcgcaga      2520
     cccaaaccaa aaactgacct tcacaacaaa tgtaaaggca gcaattcgaa ccacatcgga      2580
     tacacctgtg tattcgaagt tttatcagta cccgatgtcc ctaaaagatg aagtcaataa      2640
     acaaatagcg gagcttttgc acgacggaat aattcgacca tcaaggtcac cctacaattc      2700
     accagtgtgg attgtgccaa aaaaactcga ctcctctggt aaaaagaaat acagagtcgt      2760
     gattgattac cgaaaactca atatggtaac agtagcagat aggtacccaa tccccgatat      2820
     taacgaggtt ttagcccaac ttggtgacaa caaagttttc tcggtgctcg atcttaaaag      2880
     tgggtttcac cagatcccac taaaagactc cgatatcgaa aagaccgcct tctccataaa      2940
     tcatggaaaa tacgagttca ctcgacttcc attcggtctg aaaaatgcac catcaatatt      3000
     ccaacgcgca ctcgacgata tccttcatga gcatattggc aaaatatgtt tcatctatat      3060
     cgacgatatc attatcttta gcaaagatga tgaaacccat tacaaaaacc tggacataat      3120
     tttcaagacc ttgcaacaag ccaacatgaa atgtcagttg gacaaatgcg agtttatgaa      3180
     gaggaaggta gaattcctgg gattcgtcgt gtccgacaag ggcatagaaa ccaatccaat      3240
     caaagtacag gcaatttcag acttcccaat tccaaaaaca ctcaaagaac tgagatcatt      3300
     cttgggatta tctggatatt acaggagatt tatacccaac tacgctaagt tggcaaaacc      3360
     acttagctcg cttttgagag gggaggatgg acgaatttcc aagacattat catcaaaaaa      3420
     atccgtctcc cttaataacg aagcaatgga agccttcaag aaattgaaga gcagtttgat      3480
     ttccccagac gtgatactcc actacccaga ttttaaaaaa gaatttcacc taacaacgga      3540
     cgcttccaat ttcgcagtgg gtgctgttct ttcacaagaa aacagaccca tttcattctt      3600
     atcgagaaca ctctcgaagg cagaggaaaa ctacgccaca aatgagaaag aaatgctagc      3660
     cattatctgg gctctaaaaa agctcaaaac ttacctttac ggtaaagcaa aggtgaaaat      3720
     ctttaccgac catcagcctc tgacccattc cctcagcagc tggaatggaa atgcgagaat      3780
     caaaagatgg aagtcatacc tcgaggaata cgactatgaa attctctata aaccaggcaa      3840
     agaaaacgct gtggccgacg ctctgtccag aggaccaaca gccgcgcaaa taaactcggt      3900
     aacctcaaca atgcacagct ctgacagttc gagccatggg ttgataccta gcgttgaagc      3960
     tccaataaat gcatttaaaa atcaaatttt cttccggaaa gcagagtcgg agaattactc      4020
     agttagcatc ccattcccga cattccatag gcatttagtg gaccgtaaat tgttcacacc      4080
     tgatagcctc ttgtcagatt tgaagaaata tcttaaccca tccgtgataa acggaatttt      4140
     cacatcccag gatgtaatgg ggaaaataca aatcctctac cccatccact ttaagggttt      4200
     caagattaga ttcactcaga ctgaggtcaa agaccttgtt accgaagccg aacaggagga      4260
     agaaatactt aggacacaca acagagcaca cagaaacgct ttggaaaata aagctcagct      4320
     gtccgaaaga gtgtattttc ctaaaatgag gaaaaaagtt tcagctatcg tgagtcagtg      4380
     tttggtgtgt aagacctcta aatatgacag acaccccaca catccggaaa tcagagaaac      4440
     tcccttgcca gaataccccg gacaaattat tcatgtcgac atctattcga cagaacgata      4500
     tctggtgctc acagcaatcg acaaattctc caagctggct ctgggaagag tcattaaatc      4560
     gaaagctata gaggacatta gaaaaccctt aagagatatc gtattctatt atggagtgcc      4620
     caaactaata gtaatggaca acgaaaagtc cctcaactca gcttctatca aattcatgtt      4680
     ggcagaccag ctgggcattg agctctataa agcacctccg tacaagagta cggtaaacgg      4740
     acagatagaa agatttcact ccacactctc tgaaataatg agatgcttga aaggagatgg      4800
     gacacataga agcttcgaag aacttcttga tagagctatc tatgaataca acttcactgt      4860
     ccattcggtc acaaaaaaac gacccctaga ggtgttcttc ggtaggggaa ctaccgcgtc      4920
     accagaacag tatgaacaag ctagactgga caatgtagac cgtcttagaa agaaacagga      4980
     aactgacatt aaaaattaca accggacaag aaagcccata aagacctaca tcaagggcca      5040
     agaaattttc gttagggtta atacaagatt aggatctaag ctatcaaaca gatttagaaa      5100
     agaaatagtt aagcaagata ggaatactac aatactaaca gagtcaggaa aaatagtgca      5160
     caaaagtaac atcagatcat gattactttc aggatactta ctgtggtcgc attgacaaat      5220
     ggactcattg aaataactaa ctacaccgac gcacagactg tgacgattta caacgggata      5280
     ggacagatac agataggaac aacgagaatt gtccatatca ttgacttgga ccacgtacaa      5340
     ctgaccatag gaaaactaac agactacatc gatcaggact tcaacgacga caagtcatat      5400
     cacttactga actacgaact gacacagacg aagaacttgc tcgacactgt gatcctggca      5460
     aagacaagga aaactagatc gataaatctt atagggacgg cctggaagta tgttgccggt      5520
     agcccggatc acgatgacct tgtagctctg accgacggga taaacgactt gacggataac      5580
     aacaatagac aggtaataat caatagacag ctggaaaata gaatgaacct actaaccgac      5640
     gtgaccacga aaatacaaaa ctcaatcaga aaagattcta ccttaaagga tgagctggcc      5700
     ataagactac agaaccagat taggctcgta aaagaagaga tagtcaacat taaatttgcc      5760
     attcaatggg caaggctggg tgttatgaac acattcctgc taaacgagtt cgagttgaaa      5820
     gagatcgaca gcctactcaa aatcaataat atgccgactt ctgccttaac ggtcgaagaa      5880
     atgttaaaac tctcagacgt ttccgtttta cataacggaa ctacaatttt gtatgttatc      5940
     aaaatcccaa ttttaaaacc aactaatttc ctaaattatc aaataaggcc agtaaagaaa      6000
     aacaataata tcattaattt accagctaaa gaaattttta aatttaaaga cgaaatgtac      6060
     ggaattaatg ccttttgcaa aagttcaaac agtttaaaaa tatgtaaaga taaattcatt      6120
     agtaatttaa gtaaagacct ttgtctaccc gaacttttaa atggaaagca atcaaggtgt      6180
     gagttcgcca atgcagaaca catccctgca atagaagaaa tagacgacgg gctaatatta      6240
     ctcaacgact tcaatggcac ggtgaactgg agggacatcg agagacgatt gagcggcact      6300
     tacttgataa cgttcctgaa cgagaccctg aaaatcaacg gccgagagtt cagtaacaat      6360
     gaagtggctt caacaaaacc tgcgccacca ctgatacagc tgactccata cgaggtggga      6420
     cgccttcgaa ttctctcgct agaagtactc gagcaacttc atctgaataa cacatctgag      6480
     ttacgcaaac ttcgaacgca ctcaacaata aacagagtgt tcggcgcaac aatactaatg      6540
     atgattgctg tcctgatctt cgtgacaaat cggtgctgcc ggagaggaaa aaaggtggtc      6600
     cttcaaatcg acgcacctgg cattcaaacc attgacgcgg tgcccaaacc accacagatc      6660
     accccaccaa caatgcgttt caacaacatc ccgttttttt gatgaccgct tgaggacaag      6720
     cgtcgattaa gaggggagg                                                   6739
//
ID   Gypsy2-I_Dmoj repbase;    DNA;    INV; 5236 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   24-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dmoj;
KW   Gypsy2-LTR_Dmoj; Gypsy2-I_Dmoj.
XX
NM   Gypsy2-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5236
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1032-1032 (2009).
XX
RN   [3]
RP   1-5236
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (24-JAN-2022).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..5015
FT                 /product="Gypsy2-I_Dmoj_1p"
FT                 /translation="MKLSIDEVSVVQLKKWLAALGLSTQGCKTELVARLNG
FT                 VPANLRGSAPEVEQGEEESDQTGVSQTVQMQQEEIDRNENILRELSEQIDA
FT                 AKKQLKNFHTRQLDRDGSSKRAEISANGVDAEVEFEERATDARQKGASENC
FT                 VINTTHNDEVMSMMFKLAKEIMVEFTGEESISNWIAQLNNVSQLYQLTDMQ
FT                 KKLLCMAKLKGKAMQWIHDDSSRIVQPLGTLLDGLAAAFGSKISKAEMRRK
FT                 FGARIWSVDEKFTQYYEEKIRLAREIRLDVDELLDGLIEGIPNAVLRAQAR
FT                 IQCFEDPSKLVRAFAEVRLPLHRSTGGKGTTAVGPGLDNAMKETRCFNCNY
FT                 KGHWARDCQKPKREKGTCYHCGAKDHMVAQCTKRKDDIGNNFVRLISIHFK
FT                 SKDNASIIAECLIDSGSPISFIKKSCVPVGIKLKAHAENYFGLNESQLNVI
FT                 GKTFVHIFKKFEKINFWLIVVPDESMRSEVILGRDFMEACNLYVDPIALRM
FT                 ISVERAAGTLDKSLENTLLGNTSLDKSLENTLLGNTSLDKSLENTLLGNTS
FT                 LDKSLENTLLGNTSLDKSLENTLLGNTSLDKSLENTFLGNTSLDKSLENTF
FT                 LGTTSLDKSLENTLVNKENEELGKKLVNKVLENEELGKKLVNKVLENEELG
FT                 KKLVNKVLENEELGKKLVSKVLENEELGKKLVSKVLENEELGEKLVSKLLE
FT                 NKELGRKLVNKVLGNKELEEKLLDKEEIDRSKECLEKSMEINSKSVFDDNF
FT                 ENSMLQINVVDGDNEKEIYIIGENISYDVRKKLIRLLKVEYVDAERPVKPK
FT                 KKCEMNIRIEKAKPFSCSPRRLSYTEKEKLQIMLDEYLRNGIIQPSCSEYA
FT                 SPIVLVKKKTGDLRMCVDFRKLNKIMIKDNYPLPLIDDLLDRLVGKSIFTK
FT                 LDLKNGYFHVFVEKESVKYTSFVTPLGQFEFLRMPMGLKTAPQIFQRFVND
FT                 IFADLIKESKVIVYMDDIMIASKDVSEHLKILEEVLKRLVENKLELRLDKC
FT                 EFLQNKVKYLGFVISEDGIRADDKGLEAVKNFPIPNKVQAVQSFLGLCSYF
FT                 RRFIKDFSTLAKPLYDLLRKDRKFQFEEKELNCFLCLKEKLLEAPVLALYN
FT                 HKDDVELHCDASAMGFGAVLLQKKEDGKLHPVFYFSKRTTETEAKYHSFEL
FT                 ETLAIINALRRFRIYLQGRKFKIVTDCNSLTLTLNKIDLNPRIARWALEMQ
FT                 EFDYELVHRAGSQMQHVDALSRYNNTIMVTEANSFETNLIICQTKDAKLQE
FT                 IRKLLEKQEHKLFEMRNGVIFRKTNDDRLLFYVPEKMEEHVLYKYHNELGH
FT                 VGRDKMLNAISKSYWFPNMKKKILEHIENCLQCIAFSPRTGKAEGLLHSIP
FT                 KGNKPFQIIHIDHYGPVDNGRSKKYIFAVVDGFTKFVRLFTTKTTSTREVV
FT                 KALREYFRTYSKPECIISDRGSCFTSTEFDQFLEEAKVKHIRIATGSPQAN
FT                 GQVERINRSLGPMIAKLIEGDNGQHWDSIIERVEYVLNNTQHCSTKQLPSV
FT                 MLFGIAQKGEISDSLGEQLEKIIGLDICSSQNLEDIREQAQHYQSAAQTRN
FT                 EENFNNARKAAKVYKPGDYVMVKNFDNTVGISRKLIPKSKGPYVIDKVLKN
FT                 DRYLIKDVDGFQLSRNPYQGVWSASNIRHWIKA"
XX
SQ   Sequence 5236 BP; 2001 A; 670 C; 1173 G; 1392 T; 0 other;
     atctcagaag tgggataaag tacactaatt tttcaaatta aataaaatga atttaagcat        60
     aaatgaaatt aagcatagac gaagtatctg tggtgcagtt aaagaagtgg ctagctgcat       120
     tgggcttgtc gactcaaggg tgcaagactg aacttgtcgc tcgcctcaat ggcgtgcccg       180
     caaatttgcg cggcagcgcc cccgaagtgg aacagggaga ggaggagtca gatcaaactg       240
     gagtatcgca gacagtgcaa atgcaacagg aggaaataga caggaatgaa aatattttgc       300
     gagagctaag tgagcagatc gacgcagcaa agaagcagct aaaaaatttt cacacacgac       360
     aattggacag agacggcagt agcaagcgtg ccgaaattag cgcaaatggc gtcgatgcag       420
     aagttgaatt cgaagaacgc gcgactgacg cgcgccaaaa gggcgccagt gaaaattgtg       480
     taataaatac aacgcacaat gatgaagtga tgtcaatgat gtttaaacta gctaaagaaa       540
     ttatggtgga attcactggg gaggagtcta ttagcaactg gatagcgcaa ttgaataatg       600
     tatctcaatt atatcaacta acggacatgc aaaaaaagtt gctatgcatg gccaaattaa       660
     aagggaaagc catgcaatgg atacatgatg attcatcgag gattgtgcaa ccgttgggca       720
     cattattgga tggattggca gcagcattcg gaagcaagat atccaaggcc gaaatgcgtc       780
     gcaagtttgg ggcacgtata tggagtgtcg atgagaagtt cacccagtat tatgaagaga       840
     aaatacgttt agcaagggaa attcgtttag atgtagacga gctactggat ggtctcattg       900
     aaggaatccc aaatgcagtt ttacgcgcgc aggccaggat acagtgcttt gaagacccca       960
     gcaaattggt aagggctttt gcagaggtgc gtttgccact gcatcgatct actggaggaa      1020
     aagggacaac agcagtggga ccagggctcg ataatgcaat gaaggagacg cgttgcttca      1080
     attgcaacta taaggggcat tgggcaagag attgtcagaa gcccaagagg gagaagggta      1140
     cgtgctacca ctgcggcgct aaggatcata tggtggcaca atgcacgaag aggaaggatg      1200
     atattggaaa caatttcgta aggttaatca gtatacattt taagtccaaa gataatgcct      1260
     ccattattgc agaatgcctc atagattcag gaagtcctat ttcgtttatt aaaaaatcgt      1320
     gtgtcccagt tggaataaaa cttaaagcac acgcagaaaa ttactttggg ctaaatgaaa      1380
     gccagttaaa tgtgattgga aaaacatttg ttcatatttt caagaagttt gagaaaataa      1440
     atttttggtt aatagttgtc cctgatgaat ctatgaggtc tgaagtaatt ttagggagag      1500
     atttcatgga agcttgcaat ttatatgttg acccaatcgc cttgagaatg atttcagtgg      1560
     aaagagcagc tggcacgtta gataaatcgt tagaaaatac attgttagga aacacatcgt      1620
     tagataaatc gttagaaaat acattgttag gaaacacatc gttagataaa tcgttagaaa      1680
     atacattgtt aggaaacaca tcgttagata aatcgttaga aaatacattg ttaggaaaca      1740
     catcgttaga taaatcgtta gaaaatacat tgttaggaaa cacatcgtta gataaatcgt      1800
     tagaaaatac attcttagga aacacatcat tagataaatc gttagaaaat acattcttag      1860
     gaaccacatc attagataaa tcgttagaaa atacattagt aaataaagaa aatgaagaat      1920
     taggaaagaa gttagtaaat aaagtgttag aaaatgaaga attaggaaag aagttagtaa      1980
     ataaagtgtt agaaaatgaa gaattaggaa agaagttagt aaataaagtg ttagaaaatg      2040
     aagaattagg aaagaagtta gtaagtaaag tgttagaaaa tgaagaatta ggaaagaagt      2100
     tagtaagtaa agtgttagaa aatgaagaat taggagagaa gttagtaagt aaattgttag      2160
     aaaataaaga attaggaagg aagttagtaa ataaagtgtt aggaaataaa gaattagaag      2220
     aaaaattatt agacaaagaa gagatcgata ggtcaaaaga gtgtttagaa aagtcaatgg      2280
     aaataaatag caaaagcgtt tttgacgata attttgaaaa cagcatgctt caaattaatg      2340
     tggtagacgg agacaatgaa aaagagatat atattatcgg tgaaaatatt agttatgatg      2400
     tgcggaaaaa actaattaga ttgctgaaag tggaatatgt agatgctgaa aggccagtga      2460
     aacctaaaaa gaaatgcgaa atgaatatac gaattgagaa agcaaaaccg tttagctgtt      2520
     caccaagaag gttatcatac actgaaaagg aaaaattaca gataatgtta gacgaatacc      2580
     ttagaaatgg catcatacaa cctagttgct cagagtatgc ttcaccaata gtattagtaa      2640
     agaaaaaaac aggagattta agaatgtgcg ttgattttag aaaactcaac aagatcatga      2700
     tcaaagacaa ttatcctttg ccgttgattg atgatttgtt agacagacta gtggggaagt      2760
     ctattttcac gaagcttgac ctgaagaatg gatattttca tgtttttgta gagaaagagt      2820
     cagtaaaata cacatcgttt gttacgccgt taggacagtt tgagttcttg agaatgccta      2880
     tgggattaaa aacagctccg caaatttttc agaggttcgt taatgatata tttgcagatt      2940
     taataaagga aagcaaggta attgtatata tggatgatat aatgattgcc agcaaagatg      3000
     tgtccgagca tcttaagata ctagaagagg ttttaaaacg attagtagag aacaaattag      3060
     agttgaggct ggataaatgt gaatttttgc agaacaaggt taaatattta ggatttgtaa      3120
     tatcagaaga tggcattaga gcagatgata agggattaga agcggtaaag aatttcccaa      3180
     tacctaataa agttcaggcg gtgcaaagtt ttctcgggtt gtgctcatat tttagaagat      3240
     ttataaaaga cttttcaact ctggcaaaac cgttgtatga cttattgcgg aaagatagaa      3300
     aatttcaatt tgaagaaaag gaactaaatt gttttttatg cttgaaggag aaattgttag      3360
     aggcaccagt actagcgttg tataatcata aagatgacgt agaattgcat tgtgatgcca      3420
     gtgcaatggg atttggagca gtgcttttac aaaagaaaga agacggaaag ctgcatcctg      3480
     tattttattt ctcaaagcga acgacagaaa cggaagcaaa atatcatagt ttcgagctgg      3540
     aaactttagc cattattaat gcacttagga gatttagaat atatttgcaa ggcagaaaat      3600
     ttaaaatagt aacggattgt aattctttaa ctttaacttt gaataaaata gatcttaacc      3660
     ctagaattgc aagatgggca ttggaaatgc aagaatttga ttatgaatta gtgcacaggg      3720
     ctggaagtca aatgcagcat gtagatgcat taagtagata taataatacc attatggtaa      3780
     cagaagcaaa tagttttgag actaatttaa ttatttgcca gacgaaagat gcaaagttac      3840
     aagaaattag aaaattgtta gagaaacaag agcataaatt atttgaaatg agaaatggtg      3900
     ttatatttag gaagacaaat gatgatagac tactatttta tgtaccagaa aagatggaag      3960
     aacatgtatt gtacaaatat cacaatgaat tagggcacgt tggaagggac aagatgctta      4020
     atgcaataag taaatcatat tggtttccca atatgaaaaa gaaaatttta gaacatattg      4080
     aaaattgttt gcaatgcata gcattctcgc ctagaacggg caaagcagaa gggttgctgc      4140
     atagcattcc aaaggggaat aaaccgttcc aaataattca tattgaccat tatggaccag      4200
     tggataacgg cagatcaaag aaatacattt ttgcagtagt agatgggttt acaaagtttg      4260
     tcagattatt cactactaaa acaacaagca ctagggaagt tgtaaaggca ttgagagaat      4320
     attttagaac atacagtaag ccagaatgta ttatatcaga tagaggaagt tgttttacgt      4380
     caacggagtt tgaccaattt ttagaagaag caaaggtaaa gcatattagg attgcaacgg      4440
     gatcgccaca agcgaatggt caggtggagc gaataaacag aagtttaggt ccgatgatag      4500
     ctaaactaat agaaggtgat aatggacagc attgggattc aataattgag agggtggaat      4560
     atgttttgaa taacactcaa cattgtagca ccaagcaatt gccaagcgta atgttattcg      4620
     gaatagcgca aaaaggggaa attagtgata gtttaggaga gcaattagag aaaataatag      4680
     gattagatat atgcagttca cagaatttag aagatattag agaacaagca caacattatc      4740
     aatctgcagc acaaacacgg aatgaagaga actttaataa tgctaggaaa gctgcaaaag      4800
     tatacaagcc aggagattat gtaatggtta agaattttga caacacggtg ggaatatcaa      4860
     ggaaattaat acctaaatcc aaaggaccat atgtcataga taaagtactg aagaacgata      4920
     ggtatttgat aaaagacgtt gacggtttcc aattatccag gaatccttat caaggtgttt      4980
     ggagtgcaag caatataaga cattggataa aagcataaga gagataataa cttatatttt      5040
     agatattaat ttcataacta gtgtgtaaca tttaattaat aatttaattt ttataacatg      5100
     taaatagaat atcggtaaga attttttttt ttgtatcaaa catgtaaaca caatattatt      5160
     tttaggaagt taagtatcaa atattatata aaattaacag agatagaggg ctatctcaga      5220
     gtcaggatgg ccgaat                                                      5236
//
ID   Gypsy2-I_Dpse repbase;    DNA;    INV; 4676 BP.
XX
AC   Unknown_singleton_20;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dpse;
KW   Gypsy2-LTR_Dpse; Gypsy2-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4676
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1033-1033 (2009).
XX
DR   Genome; Unknown_singleton_20; Positions   16472   11797.
XX
CC   Positions [2189-2788] - Reverse transcriptase
CC   Positions [3803-4279] - Integrase core
CC   LTRs are 83% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2636..4330
FT                 /product="Gypsy2-I_Dpse_1p"
FT                 /translation="MDDIIIPAESELEGINKLKRVLSLAEASGLKMKWSKC
FT                 QFLQRRVIFLGYIIEDGTIIPSREKTGAVENFPVPRDRKGVQRYLGLTSYF
FT                 RRFVKDFATIAKPLTNLLKKEVSFKMGMEELASFEQLKLRLTNPPVLLLFN
FT                 PKRVTEIHCDASKFGYLAILLQRSSEDQQFHPVEYMSRKTTPTEEKYHSYE
FT                 LEVLAIIQALKKWRVYVLGMKIKIVTDCNAFAMTMKKREVPLRVARWAIFL
FT                 QDFEFDIEHRSGVRMKHVDALSRVHCLLLEDTIRIKIQTAQKLDEWTSVIV
FT                 KVLEQGTYDDFYVQHGILHKDPTKELIVIPSSMEREIILMAHRQGHFGVKK
FT                 TTDLVQRDYYIPSLPSKVEVIVRSCLECIVSESKHGRKEGFLNLIDKGDEP
FT                 LNTFHVDHIGPMELTKKRYNHILVVVDAFSKYVWLYPTKSTGAEEVVDKFQ
FT                 RQSELFGNPRRIVTDRGTAFTSNIFKEYCDSQNIQHLLIATGVPRGNGQVE
FT                 RLNRTIISLLTKLCAEDPKAWYKNVGRVQQFINSSPPRSTKVSPFKILTGI
FT                 DMRIGYDIELKDMWKKSC"
XX
SQ   Sequence 4676 BP; 1649 A; 736 C; 1172 G; 1119 T; 0 other;
     acaattattg cgagaaagta gcctcaaact cgatacaacc gggaggatta tacgcgcata        60
     tgtataagtc cccccacatt aatgggggct cgtccagtaa aaaaaaaaaa agcaatagtg       120
     tacatcaatc attaaatcgt gtgtacatta tcgccacaaa acataaaaca cccaggagaa       180
     gcagaatttt gaacgtctag aaatttctgc aaaggagaga acgagacagc acattgagca       240
     gcacacacac agaaatggct atgtcacgac aggcctaaat ttcacgagag cgagtgagac       300
     agagtatgac agcaaaggca agcagaagag cagttacggc attatccgtt aagttcgtgc       360
     atgtctgagc gacggtagaa ccacagacga caacgaaaat tcgagaagaa gcacataaat       420
     agtgcacaag agacgagaaa attatgtgaa actgtgagag aggcagtgga acagatggaa       480
     aagaggcaca cagagagtgc ataaaagaga gttgaaaact tcgatgtcga actgttagag       540
     agagatacag agaagcaagg agtaacaaca acaacagaat ccagagagcg gcattcacct       600
     acacaggcga cgacaatatt catcagatgt gtgtataagt gcagaacgcg acgaaagggg       660
     tccagaaaga gcagagaaca tcagaattca gagagcgggc ttcacacaca acgacgacgg       720
     catcaaccag cagataggaa caaggcgtga cgagacgatc gagagcagag gaaaagaaga       780
     aaatcaaagt cccgagtgcg gcagccacat acacagacga cggcgttatc catcagacgt       840
     gtgtatgggt gcagagcaaa gaaacgacgt aagaaacaat tagcgtaata gcgacagatg       900
     tcaaagagag acagcagagt aagagtaaca gagataaagt ataagaaatt taaagagtga       960
     gataaaacat attattcgta aacattaatc aaaattctta aacattattt taagtttata      1020
     tcatattaat tacaatacta atgttgcaca acgagatcac acaactcacc gtagtcgagc      1080
     taaaagaaaa gttaaaagag ttgaagctga aaactaaggg gaacaaagca gagttacaag      1140
     acagactaat atcatatttc aagtcggagg ttaatgaaga gtcaatgtat gaggatacaa      1200
     cagattttag tttgaatatc cagagtgaac aattagaagc tccaagtaaa atggcgttta      1260
     cattgaaaga tattcgtgat tctttagttg agtttgatgg cagccagcat aaagatatta      1320
     acgattggct tacagatttt gagagcacag cagagacagt acagtggaac gcgctgcaaa      1380
     agttcgtata tggtaggcaa ttgctgaaag gagctgcgaa gttgtttgta aacagtcaag      1440
     atggtcttac taattgggat acacttaaag aagctttaga ggaagagttt acagagaaac      1500
     tgtcggcaaa gcaagtacac aagcaactcg agaataggaa gaagaagccg aatgaaagtt      1560
     tggtagaata tttttatcaa atgaagagtc tggccaaaaa gagtaattta gatgaagata      1620
     gcgtcataga atacataata gaaggtatac ctgcaaggcg caagtgaaag aattagtggg      1680
     aatcggagga aaaagaattg gtaccctcgg atttttcctt gttgatactg agctagatgg      1740
     catcccgatt gagatgtgtt ttcatgtggt caaagataga gacactttgt atagcgcggt      1800
     aatcggtagt gacgtattag aggtagtgag cgttacactt gggaaaaaag gagtagtttt      1860
     tcataaggtt gaagaggtga gggataatga aaagagatcc gagatagagg atagcgctca      1920
     aaccagtatt gctcattata gtgatattaa gagctctatc gatgtttcac cggcgaatcg      1980
     cgtagcagag ttaaaagaag cattcgagca gataatgacg ataaaagaga tagaagattt      2040
     ttcgtcagag gtcgatcttt cgcatttgag tgttatgacg aagggaatag tgaaggatat      2100
     gattacccag tataatccag taaagtcgac taattgtcca gtggaaatga agattatact      2160
     catggacgaa gtgccagtat atcagagacc gagacggttg ccttatgacg accaagaaag      2220
     ggtagatcag caaattaagg aatggttgga gaaaggaatc attcgacaca gtgtttcgga      2280
     atactcttcg cctattgtgc tagttccgaa gaaagacggt aagaaaaggt tatgttgtga      2340
     ctataggaag ctcaaccaga agattatacg agataatttt ccgacagcag ttatcgatga      2400
     tgtgttacat aaattgcaaa gaggaaagat attcacaaca ctcgatttgt gtgacggata      2460
     gtttcacgtc ccagtagagg agaactcgag gaaatttacg tcgtttgtca cccagaacgg      2520
     ccaatacgag tttaattttg taccatttgg gattaacaat tcggcagcgg tgttcacgcg      2580
     ctatatattc gcggtgctga ggccacttat tagcgaaggc gttttgatat tgtatatgga      2640
     tgacattatt ataccagctg agagtgagtt agaaggaatc aataaactga agagagtttt      2700
     gagcttggca gaggcgtcag ggttgaaaat gaaatggagt aagtgtcagt ttttacagcg      2760
     cagagtcatt ttccttgggt acattataga agacgggacg attataccgt caagagagaa      2820
     aacgggagca gttgagaatt ttccagttcc acgagataga aagggagtcc aacgatattt      2880
     gggtctcaca tcatatttcc gtaggttcgt gaaggatttc gccacgattg ctaaaccact      2940
     tacaaatcta ttgaaaaagg aggtttcttt taagatgggg atggaagaac tggcctcgtt      3000
     tgaacagcta aagcttcgat taaccaatcc accggttttg ctacttttca atccaaagag      3060
     agttacagaa atccattgtg atgctagtaa atttggttat ctagccattt tgttgcaaag      3120
     aagctcagag gatcaacagt ttcacccagt agagtatatg agtaggaaga ctacgccaac      3180
     tgaagagaaa tatcattcat atgagttgga ggtcctggct ataatccaag cattgaagaa      3240
     atggagagta tacgtattgg ggatgaagat aaagatcgtt acagattgca acgcttttgc      3300
     aatgacgatg aaaaaacgag aagttccctt aagggtagcc cgctgggcaa tatttttgca      3360
     agattttgag tttgatattg aacatcggtc gggcgtcaga atgaaacacg tcgatgcttt      3420
     aagcagagta cattgtcttc tattggaaga tacgattagg attaaaatac aaactgcaca      3480
     aaaactagat gaatggacaa gcgtaatagt taaggtgtta gaacaaggaa catacgatga      3540
     cttttacgtg cagcatggta ttttgcataa agatcctact aaggagctca ttgtgatacc      3600
     atccagcatg gaaagggaaa ttattctaat ggcccatcgc caagggcatt ttggggtaaa      3660
     aaagactact gatctagtac agagagatta ttatataccg agtttgccga gtaaagtaga      3720
     agtaattgtt aggtcgtgct tggaatgtat tgtcagcgag tcgaaacatg gtagaaaaga      3780
     aggatttctg aatttaattg ataagggtga cgaaccgttg aatacttttc atgttgatca      3840
     tataggccct atggagttaa cgaaaaaacg gtacaatcat attttggtag tagtagatgc      3900
     tttctcgaaa tatgtgtggt tgtatccgac gaagagcact ggtgcagaag aagtggttga      3960
     caagtttcaa aggcaatcag agttgtttgg aaatccaagg cggatcgtta ctgaccgcgg      4020
     tactgctttt acttcaaaca tctttaagga gtactgtgac tcacaaaata tacagcattt      4080
     gcttattgcc acgggagtgc cgaggggaaa cgggcaagtg gagcgtctaa atcggacgat      4140
     catctcgttg ttaacaaaat tgtgtgcgga agatcctaag gcatggtata agaatgtcgg      4200
     tagagtacag caattcataa attcgtcacc cccgagaagt acgaaagtgt cgccatttaa      4260
     gatcctgaca ggcatcgata tgagaatagg gtatgatatt gagttgaagg acatgtggaa      4320
     gaagagttgc tagccgagct acagagtgaa aaagaagaga tacgaaaaac agtgaaagga      4380
     aacatagcta aaatgcaaga agaaaatagt agaacgtata acaggaatag gagagaggag      4440
     cgcgagtatg aggtggatga attggttgcc atcaaaagaa cgcagtttgg agcgggtttg      4500
     aagttaagga aaaaatattt aggaccttat aaaatagtcc gcatattgag gcatggtaga      4560
     tatttagtcg aaaaagtagg agaggaagag ggacctaacc ggactaacac agtggcagag      4620
     cacatgaaaa agtggtatcc atcattcggg acgaatgagg atgtcggatg gccgaa          4676
//
ID   Gypsy2-I_DV repbase;    DNA;    INV; 4141 BP.
XX
AC   scaffold_13324;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_DV;
KW   Gypsy2-LTR_DV; Gypsy2-I_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4141
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3096-3096 (2009).
XX
DR   Genome; scaffold_13324; Positions   25734   21594.
XX
CC   Positions [2681-3154] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           9..911
FT                 /product="Gypsy2-I_DV_2p"
FT                 /translation="MTKMKNMELEELLVSVVLAHTAQLDSRLKKLVCTTNI
FT                 KSRNELQQQLQVYEIGQRQETSKAETTVGPERKKQKFSNIVCHYCGKTGHK
FT                 IAFCRQQENRESQPLGSGHAGRIGMRTKEQKSNVICYKCGQAGHISTGCPS
FT                 TGQSSEKRVNICSVMEPKGVLVHSGESADFCFDSGAECSLIKESAAGKFSG
FT                 KRLFNVVMLKGIGNDSVCSSTQILINVTINDFILEMLFHVIMDKYLKHDVL
FT                 IGREILSQGFGVTIESDRFCIYKVKLINVVTEPKTYEECINQNVELDEDDK
FT                 SRLINVLKP"
FT   CDS           1922..3676
FT                 /product="Gypsy2-I_DV_1p"
FT                 /translation="MHKINDRNHDIEYYSKCTTPAESRYNSYLLETLAVFN
FT                 AVKYYQHYLKGIKFTVYTDCNSLKASQQKIELDDKVYRWWLYLQSFEFDIV
FT                 YRKEKRMAHVDFFSRNPITKKLQFAVKTPEMRVDLTELSDTWLIAEQQRDL
FT                 EMTSLISKLKNNELNDNVASTYELRLGLLYRKIQRNGRTRWLPVVPRSYRW
FT                 AVINHIHEAIMHLGWEKTLDKVYSCYWFEGMTKYVRKFVDNYITCKLSKPQ
FT                 SGKIQQEMHPIPKIEIPWHTVHVDITGKLSGKKDQKDYVIVFIDAFTKYVY
FT                 LHNTLKIDAANCIVSLKVVISLFGVPSRIIADQGRCFPGSGFKEFCSAHNI
FT                 ELHLIATGASRANGQVERVMSTLKSLLTAVETGQRSWQEALKEVQLAINCT
FT                 VNRVTKFSPLQLLIGKDVRPLGMLSNIVDEKYDNLQNLRAQAKENIENNAY
FT                 YDKNRSDKGKANVVKHKVGDHVLLKCEERNQTKLDPKFKGPFVTTEVLEVD
FT                 RYCLKSLTSKRTYKYPHECLRALPVETVSAEMDEDMMSSSVETDAIGTSES
FT                 KGVGIETDEIGTSEGTGVGVETDARDCASEGTSVETGA"
XX
SQ   Sequence 4141 BP; 1378 A; 691 C; 933 G; 1139 T; 0 other;
     cttcgttaat gacgaaaatg aaaaatatgg agctggagga attgttggtg tcagttgtgc        60
     ttgcgcatac tgcgcaactg gacagcagac taaaaaagct tgtgtgcacc acaaacatca       120
     aatcgcgaaa cgaattacag caacaattgc aggtatatga aatcgggcag cgtcaagaga       180
     cttcgaaagc agaaactact gtgggacctg aaaggaagaa gcagaagttt tcaaacatcg       240
     tttgccatta ttgtggaaag acagggcaca aaatcgcatt ctgccgccag caggaaaatc       300
     gcgaatcaca gccattggga agcgggcatg ctggacgtat tggtatgagg acaaaagagc       360
     aaaaatccaa cgttatatgc tacaagtgtg gacaggctgg acacatttcc actgggtgcc       420
     cttcgactgg acaaagctct gaaaagagag tgaacatatg ttcggtaatg gaaccaaaag       480
     gtgtgctcgt tcattctggt gagtccgctg atttttgttt tgactctgga gccgagtgtt       540
     cactcattaa ggaaagcgca gctggaaaat tctctggaaa aagacttttt aacgtagtaa       600
     tgcttaaggg tattggaaac gattctgtat gtagctccac gcaaattttg atcaatgtaa       660
     ccattaatga ctttattttg gaaatgttat tccatgtcat tatggacaag tatttgaaac       720
     acgatgtttt gataggcagg gaaattttaa gtcaaggttt cggagtgacg atcgagtcag       780
     acagattctg catttataaa gtaaagctga ttaatgttgt tactgaaccc aaaacatatg       840
     aagaatgtat aaaccaaaat gtagagttag acgaagatga caagagccgt ttaataaacg       900
     ttttgaaacc atagatggaa cattttatct ctggtgttcc aaagaaacag gttaacacag       960
     gccgtttgga aattcggtta atagatccaa ataaaacggt acaaaggcga ccatataggc      1020
     ttagtgtaga tgagaagcaa actgttcgcg aaaaaattaa tgagttgatg gcggcaaata      1080
     ttataagacc gagctgttcc ccatttgcga gtccaatttt attggtaaga aagaaaaacg      1140
     gaactgatcg cttatgtttc gactataggg agcttaacgc taacacagtt tcggataaat      1200
     ttccattgcc tcttatctcc gaccaaattg caaggttacg tgggggtagg tatttttctt      1260
     gtttggacat ggccagcgga ttttaccaaa tacctattca cccagattca gtagagcgta      1320
     cagcatttgt aacgccagaa gggcaatttg agttttggca atgccgtttg gtttaaaaaa      1380
     tgctccgttg gtgtttcagc gggcaataat aaaagcgttg ttgccacttt cgtattcgta      1440
     tgttgtggtt tacatagatg atgtattggt cgtggccgat gcaatttcaa gattgcagaa      1500
     agtcatagaa attcttattc aagctggatt ctcatttaat ttcgaaaaat gtacattttt      1560
     aaaatcaaaa atagagtatt tgggttacga agtagaggca ggtgagctta gaactaatcc      1620
     tcgaaaattg taggcattag ttgaattgcc accgccgcaa acggttacgc agctaagaca      1680
     gttcattgga ttagcatcat actttagaca attcgtgccg aaattctccg aaactttaca      1740
     ccctctattt tgtcttacgt ctaaaggcaa taatagtttt gattggaaag aaagtcatga      1800
     aatagtgaga aaggagataa tctttgcact gacccgttgc ccggtattaa ccattttcga      1860
     tccacaatat ccggttgagc tgcatacaga tgctagctct gtgggttatg gtgcaatact      1920
     catgcacaaa ataaatgata gaaaccatga catcgagtat tacagtaaat gtacaacccc      1980
     agcagagtcc aggtataact catatctttt ggaaaccttg gcagtattta acgcagtaaa      2040
     atattatcaa cattatttaa aaggtatcaa atttacagta tatactgact gtaactcttt      2100
     aaaggcaagt caacaaaaga ttgagttaga tgacaaggta tatcgatggt ggttgtactt      2160
     gcaatctttt gaattcgata ttgtgtatag aaaggaaaaa cgcatggcgc atgtagactt      2220
     cttctcaaga aacccaataa caaaaaagtt acagtttgct gtcaaaactc ctgaaatgcg      2280
     cgtagattta actgaattaa gtgacacctg gcttatagct gaacagcagc gagatctcga      2340
     aatgacatct ttaatctcta aactaaaaaa caatgaatta aacgataatg ttgccagtac      2400
     gtatgagttg agactaggct tgctgtatcg taaaattcaa agaaatggta gaacccgttg      2460
     gttacctgta gttccaagat cttatagatg ggctgtcatt aaccacattc atgaggctat      2520
     aatgcacctt ggttgggaga agaccctcga taaagtgtac agttgttact ggtttgaagg      2580
     tatgacgaaa tacgtacgaa agtttgttga taattacatc acgtgcaagc tatcgaaacc      2640
     gcaatctggg aaaattcaac aagagatgca tccgattcct aaaatcgaaa taccctggca      2700
     tacggtacat gtagacatca ccggtaaact aagtggtaag aaagaccaaa aagattatgt      2760
     tatagtcttt atagatgcgt ttacaaagta cgtttatttg cacaatacac tgaagataga      2820
     tgcagctaat tgtatagtat cactgaaggt ggttatttcc ttgtttggtg taccatcccg      2880
     tatcatagca gatcaggggc gatgctttcc aggatctggg tttaaagaat tttgctctgc      2940
     acataacatc gagttgcatt taattgccac aggagctagt cgagcaaatg gacaggtcga      3000
     acgcgtaatg agtacactta aaagtttact aacagcggta gagacgggcc aacgttcgtg      3060
     gcaagaggca ttaaaagagg tacagttagc aataaattgc acagtcaatc gggtcactaa      3120
     gtttagtccg ttacaacttt taattggaaa agatgtaaga ccattaggga tgctatcgaa      3180
     cattgttgat gaaaaatatg ataatctaca aaatctaaga gcgcaagcaa aagagaatat      3240
     agaaaataat gcctattatg ataagaacag aagcgataaa ggcaaagcaa acgttgtaaa      3300
     gcataaagtg ggtgatcatg ttctgctcaa gtgtgaagag agaaatcaga ccaaactaga      3360
     tcccaaattt aaaggcccat ttgtcacaac agaagtactt gaagtagacc gatattgttt      3420
     gaaatcatta acaagcaagc gaacctacaa gtatcctcat gagtgtttaa gagcgttacc      3480
     ggtcgagaca gtttctgcgg agatggatga ggatatgatg agtagtagcg ttgaaacaga      3540
     cgcaattggt accagtgaaa gtaaaggtgt tggcattgaa acagacgaaa ttggtaccag      3600
     tgaaggtaca ggtgttggcg ttgaaacaga cgcaagagac tgtgccagtg aaggtactag      3660
     cgttgaaaca ggcgcataaa tgtgtaacgt cataatcaaa aggcctcttc gagaaacata      3720
     ggtagacttg gtgcgctatc tggacattca tctgtatgat ttggctatca aataagttgt      3780
     aaagattatt ttaacattga tttaaggaaa ggcgaaagaa cacttgagcg gagcatatca      3840
     acatgaattg ctaaatttat acacgaggac atgtaattgt cagaattggc cgtgtcgtgt      3900
     tattgttatt gttattcgaa tttaagtaca gcaacatgaa tattgtatga gtcgaaatta      3960
     aaagaaagaa gaatagagaa aacagagtaa ctgtcattgt cgacttgtat tttttatatc      4020
     actgagagtc ggtgagagga ctaactgtta attctctcac tgagtcagac ccgtgcatag      4080
     agttgttggt gagcgtggag ttcattgtaa gctgattcgt gtaaggacac gaagaaagcg      4140
     t                                                                      4141
//
ID   Gypsy2-I_Dya repbase;    DNA;    INV; 4925 BP.
XX
AC   chr2L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dya;
KW   Gypsy2-LTR_Dya; Gypsy2-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4925
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1034-1034 (2009).
XX
DR   Genome; chr2L; Positions 21207534 21202610.
XX
CC   Positions [2476-2904] - Reverse transcriptase
CC   Positions [4081-4530] - Integrase core
CC   'CTAG' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2182..2919,2923..4077)
FT                 /product="Gypsy2-I_Dya_1p"
FT                 /translation="MGVLFKEKEKDFATAFKGMRVTEIIDESSVLDKIDLS
FT                 HLEKSQKLKVENLVKDYKPVKSLASPVNMKIILEDDVPVYQRPRRTSYENK
FT                 CFIDKQVQDWLSEGIIVPSCSEYASPVVLVSKKDGSKRFCCDYQKLNQKIK
FT                 KDNFPMSLIDDVLDRLQGSKILTTLDMMNGFFHVPIDEDSRKFTAFVTHNG
FT                 QYEFTHVPFGISNSPAVFCRYVSEVLRELIQNQTIVVYMDDIIVPSKDEND
FT                 GIKALIVLSAASKAGLRIKWEKAQILKRRINFLGYTIENGTISPTDEKIKA
FT                 VVNFPIPQSRQALQRYLGLTSYMRRFIEDYALAAKPLSDMLRKEGNQKNDR
FT                 NLVMTELGIASFNHLKQLLVSAPVLKLFDPLAVTEVHTDASKYGFGGVLMQ
FT                 KDPDDQQFHPIEFMSRKTNNCEEKYSSYELEVLAIVNALKKWRVYLLGKPF
FT                 TVVTDCNAFAMTIKKDDLPPRVARWAMSLQEFEYKVEHRAGTKMRHVDALN
FT                 RLSCFLIADSTKSRLIGAQNRENWIKAVKVILASNKEHEDFYIKNNIFCKD
FT                 PVNELIVVPDSMVDEIIATAHKEGHFGIKKTRDILEKSYYIPGILPKVERV
FT                 VRACVECLIIDSKRGKKEGLLSPIDKAQEPLGT"
XX
SQ   Sequence 4925 BP; 1735 A; 873 C; 1176 G; 1141 T; 0 other;
     aattattggg ggctcgtccg ggatcgttca aagaataaaa ttaataaaag tgcattaaca        60
     ctaacgaatt tgagagaacg aaggagaaga taaactggcg tgcgaccatt cgacgaagca       120
     aaactggagc aaattctgga tcttttctcg acaaagaaga gaccctttga aagaatattt       180
     aagtgacggt tgcaacgacg acgcaagagc aacagtgaga ctagtagaaa gtctttcgac       240
     gtgcacatga aagttcttgg gcattttgaa gacgtgtcga aacaagaatt tttcgtggtg       300
     aaattccgta tcgaagagcg gatagagctg gcgaaagaaa cgacgaattt taaaggaacg       360
     acaacgagag gataacgaca aagagaggat aacgacaacg agaggataac gacaacgaga       420
     ggacaacgac aacgacaaac caaataaaga aggaaacagt aaacgagtag aggagatcat       480
     acgacgcaaa aacaagagaa ggatcgacgg cgtgaaaaaa tacgtgcatt tcgacgggaa       540
     cgacgaagaa ataaaaacag cagctgagac gcaaatagag gcaagacttg gagctggcaa       600
     tattgcaaca actagttttg cacagcgacg agtatataag tacatatttt tgaacaaaac       660
     gacgaaataa cgaagagcag gagcagcgac ggcgacgtaa gagcaatcga cgacgtgatc       720
     tgcaacgcaa tacggaccga ggttacggcg aagacgaact tcgcaacgca gaagaactta       780
     aatacgacga cattgaagag acgagaagtg cggcggaaga gagtcgtaac aactggttgg       840
     gtgagcgaga ggctttgttt aacattgttt aatatttttg aattcattgt ttaacattta       900
     aattaatttg taaacggctc acgcactaac atggatgcta gacaaattct cgaattgacc       960
     gtgccttttt ttaaaagcaa aattaacgga attgggtttg gataccaatg ggcgaaagag      1020
     cgctttgcag gacagattat ttgaacgcta tggcatagat gcgggcggtg aggaagagga      1080
     tgcagtaagt gtttcgggtt catctaatta tcaagatgtt agtcaccacg taggctcgag      1140
     atttactcta cgcgatgtcc aagatagcat ttcatcattt tctggctcag accacgaaga      1200
     cgtcaatcat tggttgtctg agttcgaaga cgttgcagta accgtaggct gggacaattt      1260
     gcaaagattt atctatgcta aacaactttt gaccggagcc gccaagcttt atatcaaaag      1320
     cacaaaccga attagagggt gggtcgagtt acagcgcgcg ttaaaagatg agttcggcaa      1380
     aaaattatgc tcggctgaga ttcataagct tctgcggcaa aggcaaaaac aaccaaaaga      1440
     gacatgcatt gagtttttgt acaacatgat ggagatcagc aaatcgataa atcttgatga      1500
     ggagagttta gtttcttatg ttgtagaagg cataccggat ggcaggataa ataaggctgg      1560
     gctgtatcgc gcaaaaacta tcagagagct gaaggacgaa atttctattt acgaaaagat      1620
     aaagggaaaa ggaattaata aggaaattgt taagaaagag gtggcagtga aaaaaggaca      1680
     gagtaatggc cagagaaaat gctttaagtg caacagtgaa ggccacattg ccagagattg      1740
     taagggcgac gtagtttgct atcattgcaa ccagaaaggg cacatatcca agaactgcgt      1800
     ggaaaagaaa aataatgttg tcgtcaagaa tgagaaagcg aatgtcctgg aagtcaatgt      1860
     tgaaaaaggc tcaatataaa aaaatgatag tagcaaatgg tttgacattc gtagcgatga      1920
     tcgattcggg atgcgacttg tgcttgatga gggaggatat tttcagaagc tttgaggatt      1980
     taaggctgaa gcctgaagcc taaacatctg agaggcattg gcaaaggtga gctaaggaca      2040
     ataggatgct ttgatattaa ccttcaggca gatggcgtat gctttacctc aacttttcac      2100
     gtagtaaaac agaatgaatt ggagtacgca gccattattg gaaatgatgt gctccaatgt      2160
     atcgatgtcg tgttcagttc gatgggggtc ttatttaaag aaaaagaaaa ggatttcgct      2220
     acggcattca aaggaatgcg tgtcactgag atcatcgatg agtcctccgt gctcgacaaa      2280
     atcgatctat ctcacctgga aaagagtcag aagctaaagg tagaaaatct agttaaagat      2340
     tataaacctg taaagtcatt ggcgtctcca gttaatatga agatcatatt ggaagacgat      2400
     gtacccgttt atcagagacc acgacgaact tcgtacgaga acaaatgttt catagacaag      2460
     caagtgcaag actggctttc agagggaata atcgtaccaa gttgctcaga gtatgcatcg      2520
     cctgtggtac tagtctcaaa aaaggatgga tcgaagagat tttgttgtga ctatcagaaa      2580
     cttaaccaga aaatcaagaa ggacaacttt ccaatgagcc tgatagacga tgttctggat      2640
     agattgcagg ggtcgaaaat cttaaccact ctcgacatga tgaacggatt tttccacgtg      2700
     ccgatcgacg aagattcaag gaagttcaca gcattcgtga ctcacaacgg acagtatgaa      2760
     tttacgcatg ttccatttgg catctcaaat tccccagctg tgttttgtcg ttatgtttca      2820
     gaagtcttgc gagaactcat tcaaaatcag acaatcgtag tatacatgga cgatataata      2880
     gtaccaagca aggacgagaa cgatggaatc aaggccttgt aaatcgtatt gagcgcagcg      2940
     tcgaaggcag gtttgcgaat taagtgggag aaagcacaga ttttgaaaag aagaatcaac      3000
     ttcttaggct atacgattga gaatggaacc atatccccaa ctgacgagaa aatcaaagct      3060
     gttgttaact ttccaatccc tcagagcagg caagctttgc agaggtactt gggcttaacg      3120
     tcatacatgc gacgctttat cgaagactat gctttggcag caaagccttt gagtgacatg      3180
     cttcgaaagg aaggcaatca gaagaacgat aggaacctcg tgatgactga gttgggtatc      3240
     gcttccttca accacttaaa acaactattg gtatcagcac cagtactgaa actgtttgac      3300
     cctttagctg ttacagaagt acacacagat gcgagtaaat atggctttgg cggcgttttg      3360
     atgcagaagg acccagatga tcagcaattt cacccgattg aatttatgag ccgcaaaaca      3420
     aacaattgtg aggagaaata cagttcctat gagctcgagg ttttagccat tgtgaatgcg      3480
     ttgaaaaaat ggagagtgta cttgttagga aagccgttca cagtggtcac agactgcaac      3540
     gcttttgcaa tgaccatcaa aaaagacgat ctgcctccta gagttgcaag atgggcaatg      3600
     tcattgcagg aattcgagta taaagtggag caccgagccg gaacgaagat gagacacgta      3660
     gatgcactca accgtttgtc gtgctttctt atagcggatt ccacaaaatc acgcttgatc      3720
     ggagcacaga acagggaaaa ctggataaaa gccgtcaaag ttatattggc aagtaataag      3780
     gagcacgaag atttttatat aaaaaataat atcttttgca aggatccagt aaatgagctg      3840
     atagttgttc ccgactcgat ggtagatgaa atcattgcta cagcacacaa agagggtcac      3900
     ttcggaataa aaaaaaccag agacattttg gagaagtcct attacattcc aggaattctg      3960
     cctaaagtag aaagagtggt tagagcatgt gtagagtgcc tgatcattga ctctaagcgc      4020
     ggaaaaaagg agggattact atcgccgatc gacaaggctc aagaaccact cggaacctaa      4080
     cacatcgacc acgttggccc acttaccgat acaaaaaaga agtataacca catattagca      4140
     gtcgtggatg gtttttctaa atttgtttgg ctttatccaa caaagtcaac aggaacaaat      4200
     gaggttatag aaaaactcga gaagcaagca gcagtttttg ggaaccctcg cagaatagtt      4260
     acggacagag gaaccgcact cacttcagga tcctttactg aatattgcaa tcgcgaaagc      4320
     attcaactac tccacattgc gacaggtatt cccagaggca atggacaagt cgaacgaata      4380
     cacaaaattg tcatcccgat gctcggcaaa atgtgtcaag aaaacccact aaattggtat      4440
     cgccacgtag acagagttca acaaatcata aacaatactc cacctcgaac cactaaatat      4500
     agtccattta gaattttgac aggattgaat atgagactta agctgaatga tataaaagac      4560
     ctaatagtcg acttagaact agaagaattg aacgatgaga gggaagagat tcgaaagaaa      4620
     gcacaggaaa acatagaaaa agtgtagcaa gagaatagga aaaactttaa tgagaaaaga      4680
     aaggttgaaa atgaatatga agaaggagat ttggtagcca ttgaaaaaac acagtatgga      4740
     acaggaatga aacttcgtcc aaaatttttc ggtccgtata aaattacaaa aaaaaactaa      4800
     accacggtcg ctatgaagta ataaaggaag ggaatcagga agggccaaaa acaacaacga      4860
     ctgcagccga atatataaaa aaatggagtt cattcagggg cgaatgaata ttcaggatgg      4920
     ccgat                                                                  4925
//
ID   GYPSY2-LTR_AG repbase;    DNA;    INV; 368 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   20-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY2-LTR_AG is an LTR of the GYPSY2_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY2-I_AG; GYPSY2-LTR_AG; GYPSY2_AG; Gypsy clade; GYPSY51-I_AG;
KW   GYPSY51-LTR_AG.
XX
NM   GYPSY2-LTR_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-368
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 76-76 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY2-LTR is a long terminal repeat of GYPSY2_AG (it internal
CC   portion is deposited as GYPSY2-I_AG).
XX
SQ   Sequence 368 BP; 97 A; 115 C; 81 G; 75 T; 0 other;
     tgtagcgacc agaccgccat ctggcgtgag aatcgtgagc gatcgtgaca tccagggaca        60
     aagacacgga tctccgtgga gcgcactcac caggcacacg aatgtgtcaa agtgacgtgc       120
     gccgcgtgtc cagcgctaca cttcctgctg tcagcgagca cattctctct cttgcgaccc       180
     aacctcgaaa gcgaacagac ctcttccttc gctccgcgct cgaaacttcc tcaacgtgaa       240
     accctctcgc acgaacgtgc gcaaccgttc ataatatagt gtaaaataaa gttccgtatt       300
     acctactcac gaaacccaac gcgttcgcga cataaaaaat tagggaccac ttttgtggcg       360
     cccctaaa                                                                368
//
ID   Gypsy2-LTR_AP repbase;    DNA;    INV; 407 BP.
XX
AC   Contig39744;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2AP;
KW   Gypsy2-I_AP; Gypsy2-LTR_AP.
XX
NM   Gypsy2-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-407
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 440-440 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 407 BP; 89 A; 122 C; 79 G; 117 T; 0 other;
     tgtggcgaac cgatgccaca tgacctccct ccgtcgtcgg taacattgta tacttttcgt        60
     attgtcatga acggttggtc acattgcgct cgcaccgagc ggcggcctcc gcgtcgttgc       120
     ggcggcctgc tctagctctc tctcctcgta accgcgaaca tatatagtcc attcttttac       180
     cgctagtccg cgaaccgacg ccatcttttc tccgtttaaa aactgttccc ctcaggaatt       240
     tcgcatcgcg aacgcacgtg gctagccgct caaaatctga tcatcgatcg cactttttgt       300
     acagctacct ttcttacgta ctttcgtact tattgaaata aaaagcacat cgcgcacctg       360
     cataatcaca tttggtgtac aatcatttat tcgtcaatag acgccca                     407
//
ID   Gypsy2-LTR_DM repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   20-JAN-2009 (Rel. 14.02, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_DM;
KW   Gypsy2-LTR_DM; Gypsy2-I_DM.
XX
NM   Gypsy2-LTR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-332
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(2), 474-474 (2009).
XX
RN   [2]
RP   1-332
RA   Bao W.;
RT   "Updated the sequence.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 332 BP; 94 A; 85 C; 59 G; 94 T; 0 other;
     agttattgcc ctataagtta tcgtcccaca tcttatattt caacatcatt tctgggtaaa        60
     cacaagtgcc caaaatgctg accaaaggtc tgcattcttt ccgctgtcaa cgaccagcta       120
     aaagtgcgat catctgcact tctccgccgc gtagccgctg acgaccactg attcgctgcc       180
     gacgcctgct gcgacgctgc cgacgcccac acttgattgc tagggactta gggaaatatt       240
     ttgtatctta gctttagttt caaatgaaca attacaataa acggtcgctt gcgatctaca       300
     aaataaaaat caataaactg taattattta ct                                     332
//
ID   Gypsy2-LTR_Dmoj repbase;    DNA;    INV; 274 BP.
XX
AC   scaffold_6680;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dmoj;
KW   Gypsy2-LTR_Dmoj; Gypsy2-I_Dmoj.
XX
NM   Gypsy2-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1035-1035 (2009).
XX
DR   Genome; scaffold_6680; Positions 4261564 4261837.
XX
SQ   Sequence 274 BP; 98 A; 40 C; 57 G; 79 T; 0 other;
     tgtagcaggc tactagccta tgtatactgt agctggttac tagcctatgt tatattagaa        60
     ttaagttaac agcattatgg ttaaccatcg atagatacac atctatcgat agttaaccat       120
     atcggtggct gaggaggctg tcgatatgca acatgccatt ttgagtaata gaaagaggag       180
     gatcgataca ttttaagctt gaatgtgaac aatagcagac gtgtgtatat caagaaatta       240
     tgaaataaag aaattaaata aaaggcctac taca                                   274
//
ID   Gypsy2-LTR_Dpse repbase;    DNA;    INV; 198 BP.
XX
AC   Unknown_singleton_20;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dpse;
KW   Gypsy2-I_Dpse; Gypsy2-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-198
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1036-1036 (2009).
XX
DR   Genome; Unknown_singleton_20; Positions   11796   11599.
XX
SQ   Sequence 198 BP; 84 A; 21 C; 55 G; 38 T; 0 other;
     tgtaggaaag gcagtaacgg gagtaccatt aacatagaga gaggaaataa tcgaatagaa        60
     actaagatcg agtaatcgaa aagagaagag tttgagctac gagggagaga ggttgtgttc       120
     tcggtgcgcg gattaaacga aagcgagaga agagaaaatt ataaaacact gtgtaaatta       180
     aatataagac gaatgaca                                                     198
//
ID   Gypsy2-LTR_DV repbase;    DNA;    INV; 701 BP.
XX
AC   scaffold_13324;
XX
DT   15-OCT-2009 (Rel. 14.12, Created)
DT   15-OCT-2009 (Rel. 14.12, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_DV;
KW   Gypsy2-I_DV; Gypsy2-LTR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-701
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(12), 3097-3097 (2009).
XX
DR   Genome; scaffold_13324; Positions   21593   20893.
XX
SQ   Sequence 701 BP; 191 A; 147 C; 187 G; 176 T; 0 other;
     tgcaagaagg aaaagcggtt acggctggtt ttcgttgcgt tgcaagaagc aaaagcggtt        60
     acggctggtt ttcgttgcgt tgcaagaagc aaaagcggtt acggctgggt ttcgttactt       120
     ttcgttgcgt tgcgaggcaa aggattgatg tggacagaca gaagtaaatg atctgagcga       180
     acggacataa ttgtgcactg tgaagtttag aaaagagaag caaatgccac caccaaagat       240
     gccgggactc gctgcccaaa gtgtaaaaaa ttctgaccct acggccgctt cgacatcaga       300
     agtggaattg gatcctccta actctcagtt gtgtcaaatt ttggagcaac aaaatagaag       360
     cgcagcgcct cgtgagtcaa agacggtgtt tttacccaaa tacaaccccg aagctaccgg       420
     tgctgatgca tgtgcttgga gtattacggc cgatataatt tttattgaaa atccacttga       480
     gggttgtgcg ctcgtgattg ccctcagtaa agctttggag ggcagtgcat cgcaatggct       540
     ttcacaaatc tgttttcctg gcaagacttg ggttgagttc aagcaacttt ttacgcaaag       600
     atttgtcggc gtagagacaa ccacagcaac atttcttaag ctgctagacg gacgcccagg       660
     gactggagag tgcatgtcgt cgtatgcaag ccgactcgtc a                           701
//
ID   Gypsy2-LTR_Dya repbase;    DNA;    INV; 274 BP.
XX
AC   chr2L;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2_Dya;
KW   Gypsy2-I_Dya; Gypsy2-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-274
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1037-1037 (2009).
XX
DR   Genome; chr2L; Positions 21202609 21202336.
XX
SQ   Sequence 274 BP; 75 A; 53 C; 51 G; 95 T; 0 other;
     tgtgggattg gagtaagttg gcattatcat gcagcctaga tgtttgggag tgcacacact        60
     gtttcctata tcagccagat cctaacagca ttgccaacag tctctctctc ccatggtgtc       120
     tctgaagtaa ttcagtcgcg gcagaatttt taacgaagtc agtcgatgcg tttattagtg       180
     cgagagtcgt agttcttttc atttttataa ttattaattt caaactttgt gaacaatacc       240
     ctaaataata aacttaattt gtattatccc taca                                   274
//
ID   Gypsy2-NVi_I repbase;    DNA;    INV; 5001 BP.
XX
AC   AAZX01004373;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-NVi;
KW   Gypsy2-NVi_I; Gypsy2-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5001
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1118-1118 (2007).
XX
DR   Genome; AAZX01004373; Positions    5002   10002.
XX
CC   Positions [2117-2659] - Reverse transcriptase
CC   Positions [3746-4069] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           364..1389
FT                 /product="Gypsy2-NVi_I_1p"
FT                 /translation="MAMQSRIVENLPLNGGQDQAQIFSASNAHHIIRDFFE
FT                 NEGPEKSKAWINELENTKTLYNWGDALCVSIAKSKLKKGAWKWLLTKSSTV
FT                 KTLGVFKEAFTGAFTYKRSRSEKLKVMAARSQNRNETLQHYFLDKIWLCEG
FT                 LDLEVSKIRDEIAAGLWSRDLAHYALEHEYESTDEILQDLVRVEKIHSNRR
FT                 ERLGEHRDRHNASGEAKQSGRGDHGSSSETSSRASERGAATTNSGAHSEKD
FT                 KRAFNSGKCFNCSESGHLAQNCSKPKQVFTCFLCKRPGHVASRCMNNATQL
FT                 EEKSTTNTPSHIALVDSSDSDASVKKFAREISIDNKKFVVYRYGSFSLYD"
FT   CDS           2018..4069
FT                 /product="Gypsy2-NVi_I_2p"
FT                 /translation="MDIEVESNEIVPSQPYKLSSRDRDDLDTLVTDFKRAG
FT                 IITETDSPHASPAFVVRKKDGSPRMVVHYGKVNKLSRKRNFPIPNFDDFLE
FT                 KFHKARIFITGDLYMGYLQMPITERAKPLTAFIIETQTGQFETAMLGLSWA
FT                 PIYFAKLMELVLGKARKLGIALNFFDDIFVYAENWDDLLKNFEIVLQLLKD
FT                 AGLTLNIEKCRFGMRRVEFLGYMLGEGELRPGERKIAAIDQFPRPTDKHAI
FT                 RRFLGLAEFFRRFVPNFARRKKPLSNLLRNDVVFVWAQAQEESFQNIKSAL
FT                 VKKPVLKLYKPNAAKTELHTNASAAGLGAMLLQADAEHEPLRLVYAISRCT
FT                 NTVEAKYHSSKLELMAISWALARSRPLLIGLKFVVVTDCQSLVYLNAWKTK
FT                 NAQISRWMSEIAEYDLEVKHRRGENMQHVDALSRAPLAESQSDCFDVMTMT
FT                 VDSDESEILVFQRSDSTILELINILKKREFERDKLEKQQVESFVLKDVLLY
FT                 KRIVRDNQERELYVVPAAMRKALVIRYHDLGSHFGIEKTAKRIEEYYYFPR
FT                 LRRYVRMHIRNCLECIMAKNKSGTGQGELHPIAPGRRPFDVVHVGPFPSTP
FT                 RNNKYVFGLIDNLTKFVFIVPVKNVTAVTTVKHLTDFVNLYGAPGRIVSDR
FT                 GTSFTSHVFQEFCVKQGIKHTLNSSRHPQANGLIN"
XX
SQ   Sequence 5001 BP; 1585 A; 867 C; 1244 G; 1305 T; 0 other;
     attcagaagt gggatagacc ggtagtgtgt cagagagtgg acagtagact gaacgttttg        60
     tgtactgtaa aagtgtggat ttatgtcaaa ggggttggat gagtttgaac aatttgtgat       120
     tgagaacaat ttgatatccg atttgggaga aacgatgtct gagaagaatt tagaggcagc       180
     attgcaagag atcgagagac aaaaggctcg acggcaagag agcgtctaca ggcagaaaaa       240
     acagcgctcg acctcaagcg aaagattgag gagttggaaa gggagcatcg aggatcgacg       300
     ccaggttcag cggattctca gaatgacctt ttggcgcagg caatcgcgtc gcttacctaa       360
     gcgatggcaa tgcaatcgcg tattgttgag aatttgccat tgaatggagg acaggatcaa       420
     gcccaaattt tctcggcttc aaatgcgcac catataatca gagacttctt cgaaaatgaa       480
     ggcccggaaa agtcgaaagc gtggatcaac gagttggaga atacaaaaac attgtataat       540
     tggggtgatg cactttgtgt gagcatcgca aaatcgaagt tgaagaaagg agcatggaaa       600
     tggttattga caaaatcatc gacagtcaag acgttaggag tattcaagga agcgtttaca       660
     ggagcattta cgtacaagag gtcacggagc gaaaagctga aggtgatggc agctcgttct       720
     cagaatcgta acgagacatt acaacactac ttcttggata aaatctggct ttgtgaaggt       780
     ttagacttag aagtaagtaa gattagagac gaaatagctg ccggcctatg gtcgcgtgat       840
     ttggcgcatt acgcacttga acacgagtac gagtcgacgg acgagattct gcaagatttg       900
     gtgagagtcg agaaaatcca cagcaaccga cgtgaacgtc taggagagca tcgagatcgt       960
     cacaacgcat cgggagaagc caaacagagt ggaagggggg accacggctc aagcagcgaa      1020
     acatcgtcaa gagcgtcaga gcgaggagca gcgactacca acagcggcgc ccattcggag      1080
     aaggacaagc gtgcgtttaa ttcggggaag tgcttcaact gcagtgagtc ggggcattta      1140
     gcgcaaaatt gttcgaagcc gaagcaagtg tttacatgct ttctttgtaa gcgtccggga      1200
     catgtagctt ctcgatgtat gaataacgcg acgcagctcg aagaaaaatc aacgacaaat      1260
     acgcctagtc atatcgctct agtagattca tccgattctg acgcatcagt gaaaaagttt      1320
     gcgcgcgaaa ttagtattga taataagaaa tttgttgttt atcgatatgg gagcttcagt      1380
     ttgtacgatt aagtcgatta ttgttttgcg tgaaggatac aaaatgttga atgcgccttc      1440
     gattctaaga ggttttggcg gtaatactgt tgaatccccg ggagtagttg taggaatggt      1500
     acggttagat gatttaaaac cgcgcgacgt aacttttaga gtcgtgcctg atacagcgca      1560
     gaaatatgat gtaattttag gacgtccttt cacagaagct caagatataa gttattcgaa      1620
     ggttggaggt aatttagtgt tttcggatgt tgacttagga gaaacaagga ggtcgacaaa      1680
     aacgaatgct catgcgttcg aatgcgtcga tttgaaaccc ggtacaataa actttataaa      1740
     tgtcgagatt gactcgtaca aagtgccagt aggtgtgata aatactagta atgagtgtag      1800
     atctgttgat gcgttagaca ctgtaggtga atctctgttt ggaatagaag tcgcgaaaga      1860
     attaacgcct aggtacgctc cgattacgct ggagtaaatt gtagtggata aacacattac      1920
     ggaagagcaa aagggtgttt tacttgtact tttaaataaa tatcagcgat gttttgcgaa      1980
     agaattgagt gagataggca gaacggacaa attaaccatg gatatagaag tcgaaagtaa      2040
     tgaaatagtt ccttcacaac cgtacaagct tagtagccga gatcgagatg acctagacac      2100
     gttagtcaca gactttaagc gcgcgggtat tataacagag actgattcgc ctcacgccag      2160
     tccagccttc gttgtgcgaa agaaagatgg tagccctcga atggttgttc actacgggaa      2220
     ggtaaataaa ctgtcgcgta agaggaattt tcccattccg aatttcgacg attttctgga      2280
     aaagtttcat aaagctcgta tattcatcac cggagattta tatatgggtt atctgcagat      2340
     gccaatcaca gaaagggcta agcctttaac cgcgttcatt atcgaaacac aaacgggaca      2400
     gtttgaaacg gcgatgcttg gtctctcatg ggcaccgatt tatttcgcga aattgatgga      2460
     gttagtatta ggaaaagccc gtaaattggg aatagctttg aatttttttg acgatatatt      2520
     tgtttacgcg gaaaactggg atgatttatt gaaaaatttc gagattgtat tgcagttact      2580
     gaaagacgca ggtttaactc taaatattga aaagtgtaga ttcggaatga gacgcgtcga      2640
     atttttggga tatatgcttg gagaaggtga acttcgaccc ggtgagcgta agattgcggc      2700
     aatcgaccaa tttccgcgtc cgacggataa acacgcgatt cgacgatttc ttgggctagc      2760
     ggaatttttt aggcgtttcg tccctaattt cgctaggaga aaaaagcccc tgtcaaattt      2820
     actgcgaaat gatgttgttt ttgtatgggc tcaggcgcaa gaggaatcgt ttcaaaacat      2880
     aaaatctgcg ttagtaaaga aacctgtgtt aaaattatac aagccgaacg ctgcgaaaac      2940
     cgaattgcat acaaatgctt cagctgcagg tttaggcgcg atgctactgc aagctgatgc      3000
     ggaacatgag ccactgcggt tagtctatgc gataagtaga tgtacgaaca cggttgaagc      3060
     gaaatatcat tcgagtaagc tggaattgat ggctatttcg tgggctttag ctaggtcgag      3120
     accgttatta attgggttga aatttgtagt tgtaaccgat tgccaaagtc ttgtgtatct      3180
     caatgcgtgg aagacgaaga acgcgcaaat ctcaaggtgg atgagcgaga ttgcagagta      3240
     tgatctagaa gttaagcaca ggcgcggaga aaacatgcaa cacgtcgacg ctctatcacg      3300
     agctccgtta gcagaaagtc agtcagattg ttttgatgtg atgacgatga ctgtagattc      3360
     cgatgagagc gagattttag tgtttcaacg ttccgattcg acgatcttag aattaattaa      3420
     tatactgaaa aagcgtgagt ttgaaagaga taaattggaa aagcaacaag tagaaagttt      3480
     tgttttgaaa gacgtattac tttataaaag aattgtacgc gataatcaag agcgagaatt      3540
     atatgtagta ccggcggcta tgcgaaaagc gctagttata agatatcatg atttggggag      3600
     tcattttggc atcgaaaaga cagcaaaaag aatcgaagaa tattattatt ttccgaggtt      3660
     gagaagatac gtacgcatgc acatccgcaa ttgtttggag tgcataatgg caaagaacaa      3720
     gtcagggaca ggtcaagggg aactacaccc tattgctccg ggacgtcgtc cattcgatgt      3780
     cgttcacgta ggaccgttcc cttctacgcc gcgaaataat aaatatgtgt ttggtctaat      3840
     cgacaatcta actaagtttg tgtttattgt acccgttaag aacgttactg ctgttacgac      3900
     tgttaaacat ctcactgatt ttgtaaattt gtacggagcg ccagggcgaa ttgtttcaga      3960
     ccgaggtacg agtttcacct ctcacgtttt tcaagagttc tgcgtaaaac agggaataaa      4020
     acacacgctt aattcgagtc gtcatccgca agcgaacgga ttaattaatt gagaggctta      4080
     atcagacact cattccagca atgagaatgg ataatgacgg taaaagaacc gaatgattgg      4140
     gatcgcaaca tctcgaaaat cgcgcgggac attaactgta ctgtcagcgc agccactggt      4200
     gttgaaccat acaaagcgtt gttgggatat ttaccacgat tcaacgatgg taatttgcgt      4260
     ttattaaccg aaaattgcga aacatatacc acacctagtg aacttcagga gcgcctccgc      4320
     gagcgtattt tgttagagca agctgaatat aaagcgcgat acgataagaa tcgaaatttg      4380
     aaaacagctt tcaaaattgg cgatatcgtg tatatgaagc aaaacactgt agctactggt      4440
     acgtccaccc aaacttcaaa agcctttcgg taaaagaccg cttgtagttg taggtgttgg      4500
     tcctagtgat acgtacagag tcaaacgttt aaatgaatcg caagatcgag gattcgtaac      4560
     gacagctaat gtaagtcagt taaaaatttg gacaagtttc gaaaaagaca gcgttgacaa      4620
     gtttgaagac gatagagacg gcgagcaaag tattagcgat gtaccggatg agacagatgt      4680
     aaatattgat agtaatattc cgagttgttc aacgaatgta atcaaaattt caggcaatca      4740
     agaagaaaag cttagttcag atcagcaaaa cgaaaacaca agcgcaaaat cattgccctt      4800
     ggaaaaagcg agtcgtcaga ggcgcaaacc gaaacgattt gatgactatg taatgtaatt      4860
     atttagttta gcaagcaatt attttattct atgtattatt aaacaaaaaa attgttatgc      4920
     gatatgtttt ataatttgta tttttcaaaa gaaaagatta gctacagttt ggagaccaaa      4980
     ctcctcgagg ttggccgaat g                                                5001
//
ID   Gypsy2-NVi_LTR repbase;    DNA;    INV; 304 BP.
XX
AC   AAZX01004373;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-NVi;
KW   Gypsy2-NVi_I; Gypsy2-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-304
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1119-1119 (2007).
XX
DR   Genome; AAZX01004373; Positions    4698    5001.
XX
SQ   Sequence 304 BP; 69 A; 67 C; 70 G; 98 T; 0 other;
     tgacgatcaa gagtagtgct acgatgcaat aatactcgtg ccgtactaca accgtttgta        60
     gtcgagagta gcgctctagt gcggcctcgc ggcaagtctc ttcgagcgac tccgagcggg       120
     tcagactttg tcagaccgcc gagcggtgca tttggttttc tgggcagcta gctgcgagtt       180
     cataactttt aatgtaacct tccattttat ttgattatta aacttattta cacgttttta       240
     aaagagttac ggtcattttg cgtgaatgtg tcctcttttg cccctttgaa taggtcactt       300
     aaca                                                                    304
//
ID   GYPSY20-I_AG repbase;    DNA;    INV; 4274 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY20-I_AG is an internal portion of retrotransposon GYPSY20_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY20-I_AG; GYPSY20-LTR_AG; GYPSY20_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4274
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY20_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 5-5 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY20_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG,
CC   GYPSY24_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY20-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 1378-aa GYPSY20_AGp gag-pol like
CC   protein
CC   (pos. 110-4243).
CC   The sequence of the LTRs flanking GYPSY20-I is deposited as
CC   GYPSY20-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..4243
FT                 /product="GYPSY20_AGp"
FT                 /translation="MALPNPVVDDPAVASPALPAVSGAAVPVTFHFEPFNP
FT                 ASSKFDRWLNRLQISFRIYHVREADKRDFLLHYMGGPTYDVLCNKLKNAEP
FT                 HTKTYDEIVALLKEHYSPTPLEILENFKFASRKQLEQETLSDYLMHLEKLA
FT                 QTCNFGDYMDKALRNQFVFGIQNRVIQSRLLEVRDLTLTKAKEIAFGMEMS
FT                 HRGTDEMHNSRQKSEVQHIEHGANKTKKSFQSSSQASSSQSSGRLSNKQNG
FT                 GNKRCYRCGDPDHYADKCKHKATICKYCKKAGHLERMCLTKTNEKGTDDAH
FT                 HLEEQPCVMKDVLHLNAIQGIAGKFLLSLWINQKQLTFEVDTGSPVSLINL
FT                 QDKRKYFNNFDISPTNIRLVSYCDNDIGVLGKITVKVVANGEEFTLPLHVA
FT                 ESSRHPLLGRDWLLALNLDFNRVFQPGTHSVSYCSGKNQSTTNALNNLLTK
FT                 FSRVFDERVGKIEGIQATLTVRKNTKPVYIKARPVAFAVRSTVDKEIDHFV
FT                 KEGIWEKVDHSEWATPVVAVRKAGGKVRLCGDYKITLNPNLLVDEHPLPTV
FT                 EELFATVAGGETFSKLDLSQAYLQLEVRPEDRDLLTLSTHRGLFRPTRLMY
FT                 GVASAPAIFQRLMEEILQGIPGVTVFIDDIRVTGSDTKMHLLRLEEVLNRL
FT                 DKYGLRVNREKCDFFSDRIEYCGYMVDKQGIHKLREKIDAIQNMPIPKNKE
FT                 QVRSFVGLINYYGRFFPNLSTILYPLNNLLKDDVPFVWSADCDKSFTLVKR
FT                 EMQSDRFLVHYDPSLPVILATDASPYGVGAVLSHQYLDGTERPLQYASQTL
FT                 TRTQQKYSQIDKEAYSIIFGVRKFHQYLYGRKFILVTDNKPISQIFSESKG
FT                 LPTMSAMRMQHYAAFLQAFDYKIRHRRSSEHFNADAMSRLPVSTTDPESEI
FT                 EEPEVVEVNAIQTLPLTVDELSAATLADVNVRELLRALRTGNSVEGKHRFG
FT                 VNQEEFNLHKDCLMRGSRVYIPPALRRKVLEELHSTHFGITRIKSLARSYC
FT                 WWEGIDRDIENLVNDCASCQAAKANPPKVTFHCWETPTEPFQRVHADYAGP
FT                 FMGLYYLILIDAYSKWPMVYVVKNMTTETTIRLCREFFSTYGLPSVFVSDN
FT                 GPQFTSTEFSRFLKLNGITHKLSAPYHPATNGQAERFIQTMKSKLKSLQCD
FT                 RGEVHSEICNILLSYRKMIHPATGFSPSKLVFGRQIRSRLDLMIPSNDPNS
FT                 NEVQSKIRALTTGSKVAAREYVHGNKWEFGTIKERLGKLHYLVKLNDGRTW
FT                 KRHIDQLRSVGAGLSESTKEEISLRREEIGGENFYDNTIAVTPDITTNTYN
FT                 YDNTYTSTDMSLPAIPTAPNLETGIQLPISNETAAIDQPTGSADLPVDQRL
FT                 RRSLRTIKPPQRLNL"
XX
SQ   Sequence 4274 BP; 1272 A; 929 C; 939 G; 1134 T; 0 other;
     atttggcgac gagaagtacg aagctacgtg aatgtgctag gcgcaataca tatacaaaca        60
     agttgctgca tcgtgaattt ggctgtctac tgcgtaattt tacatcacaa tggcgcttcc       120
     taacccggtt gtcgacgatc cggcagtcgc cagtcccgct ttgcctgctg tgagtggtgc       180
     tgcggtacca gttacatttc atttcgagcc attcaatcct gcttcatcga aatttgaccg       240
     atggttaaat cgactacaaa tttcattccg gatttaccac gtgcgtgaag ccgataaacg       300
     cgattttctg ctacactaca tgggcggccc tacatacgat gtgctgtgca ataagctgaa       360
     aaatgctgag ccacatacaa aaacgtacga cgagattgta gctctactga aggaacatta       420
     cagtcctact cctttggaaa tactggagaa tttcaagttc gcgagccgta aacagctaga       480
     gcaagaaact ctaagcgatt acctgatgca tttggagaag ctcgcccaaa catgcaattt       540
     cggggactac atggacaagg ccctccggaa ccagttcgtt tttggcatcc agaaccgtgt       600
     gatacagtct cgattgctgg aagtgcgcga cttaaccttg acaaaggcaa aggagatcgc       660
     attcggaatg gaaatgtctc atcgtggaac cgatgaaatg cacaactcac gtcaaaaaag       720
     tgaggttcag cacatcgagc atggagcaaa caaaactaaa aaaagtttcc agtcatcgag       780
     ccaagccagt tccagtcaaa gttccggtcg cctgtcgaac aagcagaatg gtggaaataa       840
     acgatgttat cgttgcgggg atcctgacca ctacgcagac aaatgcaaac ataaagctac       900
     gatctgcaaa tactgcaaga aagcggggca tcttgagagg atgtgtctca ccaagaccaa       960
     cgagaagggg acggatgacg cacatcacct ggaggagcag ccgtgtgtta tgaaggatgt      1020
     gttacacctg aacgcgatcc aaggtattgc tggtaagttt ttgttgagtc tgtggataaa      1080
     tcaaaaacag ctaacgttcg aggtcgacac tggttcaccc gtatccttaa tcaacctaca      1140
     agacaaacga aaatacttta acaattttga catttcccct actaacattc gactcgtgag      1200
     ttactgcgat aatgacattg gtgtgcttgg gaaaataacg gtaaaagtag ttgcaaatgg      1260
     tgaggaattt acattgcctc tacatgtcgc agaatctagt agacatccgt tgttagggcg      1320
     tgattggcta cttgctttga atttagattt caatcgtgta ttccaaccag gtacacattc      1380
     agtttcctac tgtagtggca aaaatcagtc taccactaat gcattgaata acttacttac      1440
     aaaattttca cgtgtctttg atgaacgtgt tggtaaaatt gaaggaatac aagctacact      1500
     tactgttagg aaaaatacaa aaccggtata cataaaagct aggccagtgg catttgcagt      1560
     gcgcagcacg gttgataagg aaattgatca tttcgtgaaa gaaggcatat gggaaaaagt      1620
     ggaccactca gagtgggcta cacctgttgt tgctgttagg aaagccggag gcaaagtgcg      1680
     gttgtgcggc gattacaaaa ttactcttaa cccaaactta ctggtggatg aacatcctct      1740
     tccgacggtc gaagaacttt ttgctactgt tgcgggaggg gagacattct caaaattgga      1800
     cctttcgcaa gcttacttac aactcgaagt tcgacccgag gatagggact tacttacatt      1860
     gagcactcat agaggcttgt ttcgtcccac tcgactcatg tatggagttg cttccgcacc      1920
     tgcaattttt caacgtctga tggaggaaat tttgcagggc atacctggcg ttactgtctt      1980
     cattgatgac attcgcgtta ctggttctga tacaaaaatg catttactta gacttgagga      2040
     agtacttaac agattagata aatatggatt gcgtgtcaat agagaaaagt gtgacttttt      2100
     ctctgatcga attgagtact gcgggtacat ggtggacaag caaggaatcc acaaactccg      2160
     cgaaaagatt gatgcaatac aaaacatgcc tattcctaaa aataaggagc aagtacggtc      2220
     ttttgttgga ctcattaact actatggtag atttttccct aacctcagta ctattttgta      2280
     cccactgaat aatttactta aagatgacgt tccatttgtg tggagtgctg attgtgataa      2340
     atcgtttaca ttggtaaaaa gggagatgca atccgatagg tttttagtac attatgaccc      2400
     gtcacttccg gtaattttag ctactgacgc gtccccatac ggggttgggg cagttcttag      2460
     tcatcagtat cttgatggaa ctgaacggcc attacagtac gcatctcaga cccttactcg      2520
     aacgcaacaa aaatattctc agatcgataa ggaagcctac tcgatcattt ttggtgttcg      2580
     caagtttcat caataccttt acggtcgcaa atttattctg gtaacagaca ataaacctat      2640
     cagccaaatc ttttcggaat ctaaaggact tcctactatg tccgcaatgc gcatgcagca      2700
     ttacgcggca ttcctacagg cgttcgatta taagattcga catcgccgtt cgtcggaaca      2760
     tttcaatgcc gatgctatgt ctcgcctacc ggtttcaact actgaccctg aatcggaaat      2820
     tgaagaaccg gaggtagtcg aggtaaatgc aatacaaaca ctcccactga ctgtagatga      2880
     attgagtgca gctaccctag cggatgtgaa tgttcgcgaa ttgctacgtg ccctaagaac      2940
     tggaaactca gttgaaggga aacatagatt tggtgtgaat caggaagaat tcaacttaca      3000
     taaagattgc ttgatgcgtg gtagccgagt atacatacca cctgcattgc gaagaaaggt      3060
     gcttgaagaa ctccattcaa cacatttcgg tataacacga atcaaatcac ttgctcggag      3120
     ttattgttgg tgggaaggca tagacagaga catcgaaaac ctggtcaacg attgtgcttc      3180
     ctgtcaggct gcaaaggcta atcctcccaa agtcactttt cattgttggg aaacacctac      3240
     ggaaccgttt cagcgtgttc atgcggacta tgctggccca ttcatgggac tttactacct      3300
     catattaatt gacgcatact cgaagtggcc tatggtctac gttgtgaaaa acatgactac      3360
     ggaaacgaca attcgtttgt gccgggagtt tttcagtact tatggattac cttctgtctt      3420
     tgtgagtgac aacggtcctc aatttacctc tactgaattt tcaagatttc ttaaactaaa      3480
     cggaattact cataaactta gtgctccgta ccatccagcc actaatggac aggctgaaag      3540
     atttatacaa acaatgaaat ctaaactaaa gtcgctacaa tgtgatcgag gggaagttca      3600
     cagtgaaatt tgcaatatac tgctctcata ccgtaaaatg attcacccag ccaccggatt      3660
     ttcaccttca aaattagtgt tcggtcgtca gatccgttca aggctggatc tcatgatacc      3720
     atcaaacgat ccaaactcaa atgaagttca gtctaaaata cgtgcattga ctactggatc      3780
     aaaagttgca gctcgagaat acgttcacgg aaacaagtgg gagtttggga caattaaaga      3840
     acgtctaggt aaactccact atttagtgaa acttaatgac gggcggacct ggaaaaggca      3900
     tatcgatcaa ctacgtagtg ttggtgcagg gctatcggaa tctactaagg aagaaatttc      3960
     tttgcgccgt gaagagattg gtggtgaaaa tttctacgac aacactatcg cagtcactcc      4020
     agacattact acaaatacat acaactacga taacacttat acatccactg acatgtccct      4080
     ccctgctatc ccgactgctc ctaatcttga aacgggtatc caactaccga tttctaacga      4140
     aacagctgca attgatcaac ccacagggtc agcggacttg ccggtggacc aaaggttgcg      4200
     tcgttctctg cggaccatca agcctccgca aaggctcaac ctataacaac gaattctatt      4260
     ttgcgcggaa gagc                                                        4274
//
ID   Gypsy20-I_Dpse repbase;    DNA;    INV; 5433 BP.
XX
AC   Unknown_singleton_29;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy20_Dpse;
KW   Gypsy20-LTR_Dpse; Gypsy20-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5433
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1116-1116 (2009).
XX
DR   Genome; Unknown_singleton_29; Positions   42475   47907.
XX
CC   Positions [1958-2500] - Reverse transcriptase
CC   Positions [3407-3883] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(224..3148,3152..4393)
FT                 /product="Gypsy20-I_Dpse_1p"
FT                 /translation="MNRDEILALLVADLRDKLAEIGLNRTGRKVELQNRLL
FT                 AHYGFQTDQNDEEVRDEGETADEINEEVSFRTVASNNEQARGNERRDENPI
FT                 GSGQRRQADSSNSGRSWFTLKDVEGSVSQFSGTSSPDINQWIEELEECALT
FT                 VEWNQLQVFIYAKQLLSGAAKLFIRSQRDIRDWNVLKDALIDEFGVKVSSA
FT                 EIHRRLGKRQKRKNETLHEYLYALMELAKPIEMDDESLIEYFVSGIPDSST
FT                 NKALLYQARNMRQLKVQIEAYQKMTGSVRSQGKFDSHFNKGEKELVKSAEK
FT                 FKKYFNCGDESHIKRDCPKRDNRCFRCNQLGHRAAQCKVDMAIKQEKATNL
FT                 VLENGRTKDTSSGLELKSVNYGKVVFKGLVDTGADLCLLSRNVFLKLGRGK
FT                 LAGHSKCLTGIGESQIMTFGSITIPVQIDDIDLMVEFHVIADEDMGFDAIL
FT                 GRTLLESVDIKVTRDGTARVLRSGSQVSTRRNVPEHRDERENVNSCTELLN
FT                 EFQSLCMVNLEQSEAINIDLSHLPHSERDQKSKIIEEYKPSRNVHCPIEMK
FT                 IVLTDDLPVYQHPRRMAYSEQNIVDEQVNEWFAQKIIKPSTSEYASPIVLV
FT                 PKKNGRKLLCCDYRKLNEKIVRDNFPMVQLQDVIEKLQGALIFTTLDLTNG
FT                 YFHVPVEVQSQKYTSFVTQKGHYEFLFVPFGISNSPAIFTRFIVAVMRELV
FT                 QKGDAVVYMDDIIIPSKDVKEGVQKLKRVLEVAGKNGLKINWSKGQILQSK
FT                 VDFLGYVIQNGTITPGKEETQCVANFPIPKDKKAIQRFIGLTSYFRKFIEG
FT                 YAVIARPLSDLLRKDSKFDFKELQRLAFEQLKAALARKPVLRWYNPKLSTE
FT                 IHTDASMLGFGDVLLQKDPEDGQLHPVMYMSKKTKPCEENYHSFELEVLAV
FT                 IGALTKWRVYVFGLKFKIITDCNAFAMTIKKKDVPLRVARWAMYLQDYDYE
FT                 IEHRSGSKMLHVDSLSRVACLLTEILFKDLNRELIVVPSQMETEIIQIAHR
FT                 QGHFSVKKTQDLVEKSYFIPKLRNKVERVVSGCVQCILVNTKAGRQEGYLT
FT                 PIDKGDKPLVTYHLDHVGPMEITKKRYNHILVVVDEFSKSVWLYPTRSTGV
FT                 EEVLNCLERQAVSFGNPFRIVTDRGAAFTSHLFKEYCDKQKNKHLLIATGV
FT                 PRGNGQVDRMHKIVVPMLSKMSLENPGNWYRHVGRVQQIINNVEPRSTKVA
FT                 PFKLLTGVYMRITDIAELRELVQQSLIGELDEDHEQLRKEARDNIQSLQEE
FT                 NKRAFDKKRKDEKQYKINDLVAIRRTQYGVGLKLRGKFLGPYKMVKIHKHG
FT                 RYDVEGAGEGEGPFKTSTGAEFLKELGANSMSGGPNVGFGGRATESVEITE
FT                 EVTERETRSGRRTMRGENTASTIDAI"
XX
SQ   Sequence 5433 BP; 1854 A; 873 C; 1409 G; 1297 T; 0 other;
     agcgaaatat tgcaaagaag cagacagaca agaacggcgg tagcagtggt aattaacata        60
     gtgttaagtt tacattttca ataacataac attaagttta aagagcggaa tactgttaat       120
     tattgtaagg tctgagagga actggattct aaaactgtat tttggcgagc gagcggcata       180
     gatccatttc ttattctatt atatttcata caagtttgta aaaatgaata gagatgagat       240
     tttggcactg ttggtggcag atttgcgaga taaattggcc gagataggtt taaatagaac       300
     cggaagaaaa gttgaattgc aaaacagact gctggctcac tatggttttc aaaccgatca       360
     aaacgatgaa gaagttaggg atgagggaga gactgcagat gagattaatg aagaggtgtc       420
     atttagaaca gtggcctcaa ataatgaaca agcaagggga aatgaaaggc gagatgaaaa       480
     tccaattgga tctggtcaga ggcggcaagc agacagttct aattcaggaa ggtcatggtt       540
     tacgttgaaa gatgtagaag gcagtgtgtc acagttttcg ggtacaagtt caccagacat       600
     caatcagtgg atcgaagaac tcgaggagtg tgcactcacg gtggaatgga accaattaca       660
     ggtgttcatt tatgccaagc aattgctcag tggggcagcg aagcttttta ttcgaagtca       720
     acgcgatatt cgtgattgga atgttttaaa ggatgcattg atcgacgaat ttggggtgaa       780
     ggtgtcatca gctgagatac atcgtaggct agggaagcgg cagaagagga agaacgaaac       840
     gttgcacgag tatctgtacg ctctgatgga gttggcaaaa ccaatcgaga tggatgacga       900
     aagtttaatt gaatattttg tcagcgggat tccagattct agtacaaaca aggctttact       960
     gtatcaagct aggaatatga ggcaattgaa ggtgcaaatt gaggcatacc agaaaatgac      1020
     agggtcggtg agatcacaag ggaagtttga ctcacacttc aataaaggag aaaaagagtt      1080
     agtgaaatca gcggaaaagt ttaaaaagta ttttaactgc ggagatgagt cgcatattaa      1140
     gcgggattgt ccaaaaagag ataacaggtg tttcagatgc aaccagctag gacatagagc      1200
     tgctcaatgc aaggtcgaca tggcaattaa acaggagaaa gcaaccaatc tagttctgga      1260
     gaatggtagg acaaaggaca cttcgtcagg attagagttg aaatcggtaa actacggaaa      1320
     agttgtgttt aaaggattgg tcgatacagg tgcagatttg tgtcttctaa gcagaaatgt      1380
     gtttttgaag cttggtagag gaaaactggc aggacatagt aaatgtttaa cgggaattgg      1440
     tgaaagccaa attatgactt tcggtagtat cacaatacct gtgcagattg atgacattga      1500
     cttaatggta gaatttcacg taattgcgga cgaggacatg ggatttgatg ctatattggg      1560
     tagaactctt ttagagagtg tggacataaa ggtaacaaga gatggaacag cacgagtcct      1620
     cagatcagga agtcaagtaa gtactaggcg caatgttcca gaacatagag atgaaaggga      1680
     aaatgttaat tcatgtacgg agttgctgaa tgagtttcag agtttgtgta tggtgaactt      1740
     agagcagagt gaagctataa atattgattt gtcacatttg ccccattcag agagagatca      1800
     aaaaagtaag ataattgagg aatacaagcc gagtcgaaat gtgcattgcc ctatagagat      1860
     gaaaattgta ctaacggatg atttacctgt gtatcagcat cctaggcgta tggcttatag      1920
     tgagcagaac atagtagacg agcaggtcaa cgagtggttc gcacaaaaga taataaagcc      1980
     cagtacatca gaatatgcct ctccgattgt attagtacca aagaagaatg gacggaaact      2040
     tctatgctgc gattatcgca agttaaatga gaaaatagtg cgagataact ttccgatggt      2100
     acagctgcag gatgttattg agaaattgca aggagctttg atttttacga cactagattt      2160
     gactaacggt tatttccacg taccagttga agttcagtca caaaagtata catcatttgt      2220
     aacgcagaaa ggacactatg agttcctatt tgtaccgttt gggatttcga attcgccagc      2280
     aatcttcaca cgtttcatag ttgcggtaat gagagaattg gttcagaagg gtgacgctgt      2340
     agtatatatg gatgatatca ttataccaag taaggatgtt aaggaaggcg tacagaagtt      2400
     gaaaagagtg ctagaagtgg caggaaagaa tggtttgaag ataaactgga gtaaaggtca      2460
     aattttgcaa agtaaggtag atttcttggg gtatgttata caaaatggta ccataacacc      2520
     cggtaaggag gaaacacagt gtgtagcaaa ctttccgatc ccaaaggata aaaaagctat      2580
     acaacgattc attgggctga cttcttattt caggaaattc attgaaggat acgcagtcat      2640
     agccaggcca ttgtcggatt tgttgagaaa ggattctaag ttcgatttca aggagttgca      2700
     gcgattagca ttcgagcaat tgaaagccgc gctcgctagg aaaccagttt tacgatggta      2760
     caatcctaaa ttatctacgg agatacacac ggatgcttct atgttaggtt ttggggatgt      2820
     cttgttacaa aaggatccag aagatggtca actgcaccca gtgatgtata tgagtaagaa      2880
     aacaaagcca tgtgaggaaa actatcattc attcgaactt gaagtgctag cagtaatagg      2940
     agcattgact aaatggcgtg tgtatgtttt cggactgaaa tttaaaatca ttacggactg      3000
     taacgcgttt gccatgacga taaaaaagaa agacgttcca ttaagagtag ctaggtgggc      3060
     aatgtatctg caggactacg attacgaaat agaacatcgt tcaggatcga agatgctaca      3120
     cgtagactct ctcagtcgag ttgcttgtta attattaaca gagatcttat tcaaagatct      3180
     aaaccgagag ttaatagttg ttccatctca aatggaaacc gaaataatac agatcgccca      3240
     caggcaggga catttttcgg tgaagaaaac acaggatctg gtagagaaat cttactttat      3300
     ccctaaacta agaaataaag tagaaagagt ggtaagcggt tgcgtgcagt gtatcttggt      3360
     taatacaaaa gcgggcaggc aagaagggta cctaactccc attgacaagg gtgataaacc      3420
     attagttacc tatcacttag accacgtcgg gccaatggag attacaaaga aaagatataa      3480
     tcacattttg gtagttgttg atgaattttc aaaatccgtt tggttgtacc ccacacgtag      3540
     taccggagta gaggaggtgc tgaactgttt agaaaggcaa gcagtatcat ttggtaaccc      3600
     attcagaatt gtcactgatc gtggcgcagc tttcacatcg cacttattca aagagtactg      3660
     tgacaagcag aagaataaac atttgttaat agctacaggc gtacctagag gcaatggaca      3720
     ggtcgataga atgcacaaaa tagtagtacc gatgctgtca aagatgagct tagaaaatcc      3780
     aggaaattgg tataggcacg tgggtagagt gcaacagata attaacaatg tagaacctag      3840
     gagtaccaaa gtcgccccat ttaaactcct aacaggagta tacatgcgta taactgacat      3900
     agctgaattg agagaattgg tacagcagtc tctcataggt gagctagacg aagatcatga      3960
     gcagttaagg aaagaggcta gggacaatat tcagtcgttg caggaagaaa ataagcgagc      4020
     ctttgataaa aagagaaagg atgaaaagca gtacaagatc aatgacttag ttgcaatcag      4080
     gcggacccaa tatggtgttg gattgaagtt gaggggaaag tttctagggc cctataagat      4140
     ggtcaagatt cacaagcacg gccggtatga tgtagaagga gcgggagaag gagaaggccc      4200
     ttttaaaaca tctacggggg ccgagttttt gaaggagctc ggggcgaact ctatgtcagg      4260
     agggccgaat gtgggatttg gtgggagagc aacagagtct gtagagataa cagaggaagt      4320
     aacagagaga gagactagaa gcggccgtcg aacaatgaga ggagagaaca cagcctcaac      4380
     gatcgacgcc atttaattcg gtgccaaagt ctcactcagc cacacgcaaa ttacgagagc      4440
     aaatatctgt attaatcaaa atatacttaa agcacagcga ccgttgtatt cataactaat      4500
     cttaaataat attcataaat aaagactaat tataataaaa cctggcgtcc tggactaaag      4560
     tacaactacg gaaaatccgg ggccacaatt tttgggggct caaccgagat ttgaacgatt      4620
     acaaacggaa agtcatcaaa ctaaagttgt gttttacaaa tattgcgaga actcggtgaa      4680
     ttgtagtggc gttgtttgga acattctgga agaaatctgc aaaaactctg ctgcgcgaaa      4740
     attcaaacaa aaggcaattg gcaaagcagc gcgagagtga gcaagacggc agcaagcagc      4800
     tacggtaaaa aggagaagaa aaaccgaagc aaatcgaatc aagaggaacg gcgtaagcag      4860
     cagagacggc gataaagaga ccctgtaccc aatctgaagg caacgcaaga cttggtggat      4920
     ggtcagcaac gtgcaatagg caggatcgtt ggcggtgagc atcatctaga caaggagaaa      4980
     ggcgtggagc agagaaggta gctagtggtt cgcaagtact gtacggcgaa aaaggcagct      5040
     ggtcaactca aaaagtctgc agcaagaaga cgttgagaaa attgacaagg cagtgagtgc      5100
     gtggaaacga gacgcagcag tcagtaactg taaaagcaga ggaatagaga ggaacggcgt      5160
     aaacagcaga gacggcgata aagagaccca gtacccaatc tgaaggcaac gtaagacttg      5220
     gtagatggtc agcaacgtgc aataggcagg atcgttggcg gtggacatca tctggacaag      5280
     gagaaaggcg tggagcagag aaggtagcta gtggttcgca agtactgtac ggcgaaaaag      5340
     acggctggtc acgacgaaaa ttctggagct gtgttagtgt gaagacgaca gaaaattctg      5400
     gagctgtgtt agtgtgacga cgacagaaaa ttc                                   5433
//
ID   Gypsy20-I_Dya repbase;    DNA;    INV; 6201 BP.
XX
AC   .
XX
DT   26-NOV-2010 (Rel. 15.11, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy20_Dya;
KW   Gypsy20-LTR_Dya; Gypsy20-I_Dya.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6201
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1117-1117 (2009).
XX
RN   [2]
RP   1-6201
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (26-NOV-2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           476..1576
FT                 /product="Gypsy20-I_Dya_1p"
FT                 /translation="MELPAENMTQLLRQIRQVPKFSGDPTNLSSFIRRIEY
FT                 LLNLYPSNDARQKAVIFGAIELQVVGDAEKVTQFGMHNEWTSLRDALITEF
FT                 KTQTPLEDLLGRLYRTPFKGNLRLFCEQLEDKSSVIINKLALENDRNNMVV
FT                 YTQAMATTIKNTIQRSLPDRLFMTLARYDISTVQKLKQTAQQEGLYEDPIS
FT                 KTFDSQPKLNSNPPNTYKHTNINQIKNTHPNQRFIRPFIPLNPTQTQNTNV
FT                 NNQTPFRQIPPTRQQQLNQYRNLYNGFRTDLLQDRQNDTRNYYQPPQQPRV
FT                 PNKRFRESSEQSRMQTNENFHQHELDYDNETEHYINNDEQFHEDQLQNTQT
FT                 ELFTDQQYQQAENFPIPAWDPTNT"
FT   CDS           1585..4761
FT                 /product="Gypsy20-I_Dya_2p"
FT                 /translation="MFNNHRYRCIVDTGSSINLMSSNFFNLQVKDKQITVR
FT                 SMTGYSKLNKYVDLPANGLFQQTQKFYIHSFSPYYDILLGRKILMENNGLI
FT                 DYSRKETIINERTFIHKELDPCDENSSENFNALLQENNFTSEINYAMDNNI
FT                 DSEHTYRLEHLNSEEKYRLTNLLKEFNDIQYSKNENLTFTSIIRHDIKTSH
FT                 ENPVYKRPYSYPFSYEAEVNKQIEEMLKQGIIRESDSPYCSPLWIVPKKMD
FT                 ASGKPKFRLVVDYRNLNEITINDKFPIPNMDEILGKLGKCQYFTTIDLAKG
FT                 FHQIEMDPKSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNYVLKDLI
FT                 NKHCLVYLDDVIIYSTSLNEHLDSLRKVFEKLKEANLKLQLDKCEFLKKQT
FT                 NFLGHIISPEGIRPNKEKVKAIEKFPLPKTPKEIKSFLGLCGYYRKFIPDF
FT                 AKIAKPLTIFLKKGAKIDTRNEEYNKSFEKLKTLIMNDPILICPDFTKTFQ
FT                 VTTDASNFAIGAVLSQDNKPVSFASRTLNDHEQNYSTIEKELLAIVWATKY
FT                 FRPYLYGVPFEILSDHKPLVWLNNIKEPNIKLQRWRIRLSEYNFKIKYLEG
FT                 KLNHVADALSRVKIEENMVGEEENISTAATIHSSSESNETYIEITEKPINY
FT                 FARQIEFIKDSVDQVETTKYFSKIKLTIKYTDMTLTKAKDILIKYFLNNSS
FT                 VIYLENDKDFLVFQKAYRETINPHSNVKILKSIIMLKDIKSYPEFKEFIIT
FT                 QHSKLLHPGIEKMIRLFKETHYFPDYNKLIQNIINDCEVCNLAKTEHRPTK
FT                 LVFEITPETNNPREIYVIDFYAIDNEQYLSCIDVYSKFASLIKTNSRDWLE
FT                 AKRALTRIFNDMGKPQKIKADKDSAFISTSLKTWLNNEDIQIDITTSKTGI
FT                 ADIERLHKTINEKIRIINTENNRENKETRMETILYIYNHKTKHNTTGQIPA
FT                 NILLYADTPTYDTQMIKEMKIKNLNKKRQDFEIDTKFRQAPLTRAKSKNPF
FT                 RKTGRIEQLDEKHYNENNRGQNVIHYKSKFKKKKKVNDSKYLQQTDTSQSS
FT                 DS"
FT   CDS           4887..6170
FT                 /product="Gypsy20-I_Dya_3p"
FT                 /translation="MHHCLTINITEVEETFNSIIKQCQEFKNVTQIKYLTE
FT                 KMEREINGIRISKRNKRGLANFVGSTLRYLFGTLDEDDRQHIEQQISTLSQ
FT                 DTVQVSTLNHVIDSLNNGIEIINNQSNSLKKEQKLNLLIFNIEHFTEYIED
FT                 IEMGSQLTRLGIFNPKLLKHENIGNINYKNLINIKTSAWYNVPTNEIFLMS
FT                 HIPMNSIERPTFIIAPYPDNNGQIIKENIEGKFYSHNNYVLNTLTKNIVKD
FT                 HCIANIIKHETPTCTFQKYRKQSYIQYIKPNILITWNMTREKLYHNCNGQE
FT                 IYIENNKIIKISNCTAELKQITISNSIQQYTNVIFTEHNVTKIEPMSHIEI
FT                 KEMILLNNKSNTIYRNILIIFISVLVLIYIFYFYMKCKTAPHKIIISYLKP
FT                 SKTTNKNIEKETETKTEIAEIANPVPHLYPEIIA"
XX
SQ   Sequence 6201 BP; 2539 A; 1233 C; 888 G; 1541 T; 0 other;
     ggcgcagtcg gtaggatact gaaaaaagtc ctagtaaact cgttatcctt tgacaatcta        60
     gtgaaaagag gaaacttgta cgaccaagta accttttctg attgtacccg cgaattggcc       120
     gcaacaaagt gatttcggtt cgtttaaagt gactaaaatc ggtatccgca caagaacctg       180
     tgcgatcgga gttaatttaa agacctaatt ttgtggaccg cttcgtgaag tgggacctcc       240
     actaaggtgt aatacaatta aaaggcgcac agtgcagttc actaagacat aagtctcgac       300
     atactgtagc agtcagtgaa caaaaacagt agcccactaa aatcaaaagt gcgaccgcta       360
     ctattgtata aaacaataaa aagttaaaac agtgcagttc acttaaggca taagtctcga       420
     catactgcag cagtctgtga acaagaacag aaactaactt ataaataaaa ctaaaatgga       480
     attaccagcg gaaaatatga ctcaattact tcggcaaata cgccaagtac cgaaattctc       540
     tggagaccca acgaatctca gctcgttcat cagacgtatc gaatacctgt tgaacttata       600
     cccttcaaac gacgctcgac agaaggcggt tatatttgga gccatcgaac ttcaagttgt       660
     cggagatgcg gaaaaggtta cccaatttgg aatgcacaac gaatggacat ctttaagaga       720
     cgccctaatc acggaattca agactcagac gcccctggag gatctactag gaagactgta       780
     tcggacacct tttaagggta acttacgtct attctgtgaa caattagaag ataagtccag       840
     cgtaattata aataagttag cattagagaa tgaccgaaat aatatggtgg tttatacaca       900
     agcaatggca accacaataa aaaatacaat tcaacgctca ctccccgata ggttgttcat       960
     gaccttagcg aggtatgaca tttcaaccgt tcaaaaacta aagcaaaccg cccaacaaga      1020
     aggtctatac gaagacccaa tttcaaaaac attcgatagt cagccaaaac ttaactcaaa      1080
     tccacctaac acctataaac atacaaacat taaccaaatc aaaaacactc accccaacca      1140
     acgattcatt cgccccttta ttccattaaa tcccacacag acccaaaaca ctaacgtaaa      1200
     caatcaaacc ccttttagac aaattcctcc gaccagacaa cagcaactta atcagtacag      1260
     aaatttatac aacggattca gaacagactt acttcaggac cgtcaaaacg acacccgaaa      1320
     ctactatcag cccccccaac aaccaagagt gccaaataag cgttttagag aaagcagcga      1380
     acaatcgcga atgcagacaa atgaaaattt tcaccagcac gaattagatt acgataacga      1440
     aactgaacac tacattaata acgacgaaca gttccacgaa gatcaattac agaatactca      1500
     gacagaattg tttacagatc agcaatatca acaagctgaa aattttccaa taccagcctg      1560
     ggatcccacc aatacataga gatcatgttt aataaccaca gatatagatg catagttgat      1620
     actggctctt cgataaactt gatgagctca aactttttca atcttcaagt taaagataag      1680
     caaataactg tccgaagtat gacaggctat tctaaattaa ataaatatgt agaccttcca      1740
     gccaacggtc tttttcaaca aacgcaaaaa ttctatattc attcattttc accttattat      1800
     gatattctgt taggaagaaa aatactaatg gagaataacg gtttaataga ctactctcgg      1860
     aaagaaacaa taattaacga aagaacattc attcacaaag aattagatcc atgtgatgag      1920
     aactcttcgg aaaactttaa tgcactctta caagaaaaca actttacatc agaaataaac      1980
     tatgccatgg acaacaacat agactcagaa cacacataca gactagaaca tttaaatagt      2040
     gaggaaaaat acagacttac aaatttatta aaagagttca atgacattca atattccaaa      2100
     aatgaaaacc ttacattcac aagtataata cgtcacgata taaaaacctc tcatgaaaac      2160
     ccagtttaca aaagaccata ctcgtacccg ttttcctacg aagcagaagt aaataagcaa      2220
     attgaggaaa tgttaaaaca aggcattata cgcgaaagcg actcccctta ttgcagtcca      2280
     ttatggattg tccccaaaaa gatggatgcc tctggcaaac cgaaattcag gttggtcgtg      2340
     gactatcgaa atctaaatga aataacaata aatgataaat ttccgattcc taacatggac      2400
     gaaatactag gcaaattagg aaaatgccag tattttacta caattgactt agcaaaaggc      2460
     tttcatcaaa tcgaaatgga ccctaagtct ataccaaaaa cggcgttttc gaccaaacac      2520
     ggtcactatg agtacactcg catgccattt ggcttaaaaa atgctcctgc aaccttccaa      2580
     cggtgcatga attacgtcct aaaagacctc ataaataagc attgccttgt ttatttagat      2640
     gatgtgatca tctattcaac atctctgaac gaacacctag actcactgag gaaggttttt      2700
     gagaaactta aagaagccaa tcttaaactc caattggaca aatgcgaatt tttaaaaaag      2760
     caaacaaatt tcttaggtca tattataagt ccagaaggca tacgacctaa taaagagaaa      2820
     gttaaggcaa tcgaaaaatt tcctctccca aagacaccaa aagaaatcaa atctttctta      2880
     ggcttatgcg gatactaccg taagttcatt ccagactttg caaagattgc aaaacctctg      2940
     acaatatttc taaaaaaagg agctaaaata gacacaagaa acgaagaata caataaatca      3000
     tttgaaaaat tgaaaacact cataatgaac gacccaattt tgatttgccc tgatttcaca      3060
     aaaacatttc aagtcactac tgacgctagc aatttcgcca taggagccgt gttatcacaa      3120
     gacaataagc cagtaagctt tgcaagtaga acattaaatg atcatgaaca aaattatagc      3180
     actattgaaa aagaactact agcaatcgtt tgggcaacca aatatttccg cccatattta      3240
     tatggagtcc cctttgagat tttgagcgat cacaaacccc ttgtttggct aaataatatt      3300
     aaagagccta acataaaact acaacgttgg cgaattagac ttagcgaata taatttcaaa      3360
     atcaaatatt tagaaggtaa acttaatcat gtagcagacg ctttatctcg cgtcaaaatt      3420
     gaagaaaaca tggtaggcga agaagaaaat atttcaacag cagcaacaat acacagttca      3480
     tcagaaagca acgaaaccta cattgaaatt acagaaaaac ccataaacta ttttgcaaga      3540
     caaattgaat ttataaaaga tagcgtagac caagtagaga caacgaaata cttttccaaa      3600
     ataaaactga ccatcaaata cactgacatg accctgacaa aagcaaaaga tatccttatt      3660
     aaatacttct taaataatag cagtgttatt tacctggaaa acgataaaga ctttttagtt      3720
     tttcaaaaag catatcgaga aaccattaac ccacatagta acgtgaaaat tctgaaaagt      3780
     atcataatgt taaaagacat aaaatcttat cctgaattta aagaattcat tattactcaa      3840
     cattctaaat tgttacaccc cggtattgaa aaaatgatac gattatttaa agaaactcac      3900
     tattttcccg attataataa actaattcaa aacattatca atgattgtga agtctgtaac      3960
     cttgcaaaga cagaacatag accaacaaaa ctagttttcg aaataactcc agagacaaat      4020
     aacccacgcg aaatttatgt tattgacttt tatgctattg acaacgaaca gtatttatct      4080
     tgtatagacg tttattcaaa atttgcttca cttattaaaa caaacagtag agattggtta      4140
     gaggcaaaac gagcccttac tagaattttt aacgacatgg gaaaaccaca gaaaattaaa      4200
     gcagacaagg actccgcgtt tataagcact tctttaaaaa cttggctaaa caacgaagac      4260
     atacaaatag atattaccac aagtaaaaca ggaatagcag acatagaacg ccttcataaa      4320
     accataaatg aaaaaatcag aattatcaat actgaaaaca atagagaaaa taaagaaaca      4380
     cgaatggaaa caattttata catatacaac cacaagacta aacataacac aaccggacag      4440
     ataccggcta acatccttct ttacgcagac acacctactt atgataccca gatgattaaa      4500
     gaaatgaaaa tcaaaaatct taacaaaaaa cgacaggatt tcgaaatcga cacaaaattt      4560
     agacaagcac ccttaacacg cgcaaaatca aagaatccct ttagaaaaac aggcagaata      4620
     gaacaattag acgaaaaaca ttataacgaa aataatagag gtcaaaacgt tattcattac      4680
     aaaagcaaat ttaaaaagaa aaagaaagtt aacgacagca aatacttgca gcaaaccgac      4740
     acctcccaat catcggactc ataatcacca taataacttg tattgcgaca caaactacag      4800
     caggaacaat cgaaatcaac ccaatagaaa acaatcaagg atttatcttg tttgaatctg      4860
     gaacaataca aatccccatc acctttatgc atcactgtct caccataaat attacagaag      4920
     ttgaagaaac atttaatagt ataattaaac aatgtcaaga atttaaaaat gtcacacaaa      4980
     ttaaatattt aaccgagaaa atggaaagag aaataaatgg catacgcatc tcaaaacgaa      5040
     acaaacgagg actggctaac tttgtaggtt ccacattaag atatcttttt ggcacactag      5100
     acgaagacga cagacaacat attgaacaac aaatttcgac tctttcacaa gacacagtac      5160
     aggtcagcac tctaaaccac gttattgaca gtctcaataa tggcatagaa ataattaata      5220
     accagtccaa ttctttgaaa aaggaacaaa aattgaatct attaatattt aatattgaac      5280
     attttaccga atatatcgaa gacattgaaa tgggttcaca actaacacga ctaggaatat      5340
     ttaatcctaa actactaaaa catgaaaata ttggcaacat taattacaaa aatctgataa      5400
     acataaaaac ttccgcttgg tataacgtac ctactaatga aatattccta atgtcccaca      5460
     ttcctatgaa ttcaattgaa cgaccaactt tcatcattgc accttacccc gacaataatg      5520
     gccaaattat taaggaaaat attgaaggca aattctactc acataacaac tacgttctaa      5580
     atacactaac aaagaatatt gtcaaagacc attgcatagc taacataata aaacacgaaa      5640
     caccaacttg tacttttcaa aaatatcgta aacaatccta tattcaatac attaaaccaa      5700
     atatacttat aacctggaat atgaccagag aaaaacttta tcacaattgt aacggtcaag      5760
     agatttatat tgaaaataat aaaattataa aaatatccaa ctgcacagca gaattaaaac      5820
     aaattacaat atctaatagt attcaacaat acacaaatgt aatatttact gaacacaatg      5880
     taacaaaaat cgaaccaatg tcacacatag aaattaagga aatgattttg ttaaacaata      5940
     agagtaacac aatttacaga aacatactaa taatcttcat atctgtttta gttttaattt      6000
     acatatttta cttttatatg aaatgtaaaa cagcgccaca caaaattatt atctcttacc      6060
     taaaaccaag taaaaccact aacaaaaata tcgaaaaaga aacagagaca aaaacagaaa      6120
     tagctgaaat tgcaaatcca gtaccacact tatatccaga aataatcgct tgaggacaag      6180
     ctaatatcta aaaggtgggg g                                                6201
//
ID   GYPSY20-LTR_AG repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY20-LTR_AG is an LTR of retrotransposon GYPSY20_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY20-I_AG; GYPSY20-LTR_AG; GYPSY20_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-270
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY20_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 6-6 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY20-LTR_AG is a long terminal repeat of GYPSY20_AG (its
CC   internal
CC   portion is deposited as GYPSY20-I_AG).
XX
SQ   Sequence 270 BP; 84 A; 69 C; 46 G; 71 T; 0 other;
     tgttatatct gagctacact tctggcagca ctggagctgt catacgctat tccccataca        60
     caccgtggta tgaacaacta ccttccatac acaccgtggt atgaatagct agattctata       120
     tacactgcga tcgcttccgc taccgttcta cgacacttga agaagagaag ccgaactaca       180
     agcactacag gactacaaat atatttagat agagataaaa cagttcggtt gtacaattta       240
     cttaattacg gttccgcccc atctacaaca                                        270
//
ID   Gypsy20-LTR_Dpse repbase;    DNA;    INV; 168 BP.
XX
AC   Unknown_singleton_29;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy20_Dpse;
KW   Gypsy20-I_Dpse; Gypsy20-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-168
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1118-1118 (2009).
XX
DR   Genome; Unknown_singleton_29; Positions   42307   42474.
XX
SQ   Sequence 168 BP; 42 A; 21 C; 57 G; 48 T; 0 other;
     tggagctgtg ttggtgtgaa gacgacagaa aattctggag ctgtgttggt gtgacgacga        60
     cagaaaattc tgtagctgtg ttggtgtgac gacgacagaa aattctggag ctgtgttggt       120
     gcgacgacaa cgaaaacatt ttggaattgg ttgttgttgg tgagtgca                    168
//
ID   Gypsy20-LTR_Dya repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   19-MAY-2009 (Rel. 14.05, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy20_Dya;
KW   Gypsy20-LTR_Dya; Gypsy20-I_Dya.
XX
NM   Gypsy20-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-341
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1119-1119 (2009).
XX
SQ   Sequence 341 BP; 125 A; 63 C; 46 G; 107 T; 0 other;
     agtgacatat tcatttcttc atacgacata ttcactcttc atataaaaaa gctaaagccg        60
     atcttttgga aagcttcact ctccaaaagc ctcataaata acattccccc aagatacgaa       120
     ccgcttaacg gtaacgagct taatgatctg ttaagcttga catataaagc taagtagaac       180
     ttaaaaggct tatgttaatc ctctgtaaaa ggtttgctgg gccgaaagaa tacctttgta       240
     aattagttct taactgacct ctggtgaaac ttattcaaat aaagatcata aaaaggaaaa       300
     tatatttttt ttcattaaat ctatcaccaa aaaagtttat t                           341
//
ID   Gypsy20S_DYa-I repbase;    DNA;    INV; 6085 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy20S_DYa-I.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6085
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6085 BP; 2493 A; 1201 C; 867 G; 1524 T; 0 other;
     ggcgcagtcg gtaggatact gaaaaaagtc ctagtaaact cgttatcctt tgacaatcta        60
     gtgaaaagag gaaacttgta cgaccaagta accttttctg attgtacccg cgaattggcc       120
     gcaacaaagt gatttcggtt cgtttaaagt gactaaaatc ggtatccgca caagaacctg       180
     tgcgatcgga gttaatttaa agacctaatt ttgtgaacag tagcccacta aaagtgcgac       240
     cgctactatt gtataaaaca ataaaaagtt aaaacagtgc agttcactta aggcataagt       300
     ctcgacatac tgcagcagtc tgtgaacaag aacagaaact aacttataaa taaaactaaa       360
     atggaattac cagcggaaaa tatgactcaa ttacttcggc aaatacgcca agtaccgaaa       420
     ttctctggag acccaacgaa tctcagctcg ttcatcagac gtatcgaata cctgttgaac       480
     ttataccctt caaacgacgc tcgacagaag gcggttatat ttggagccat cgaacttcaa       540
     gttgtcggag atgcggaaaa ggttacccaa tttggaatgc acaacgaatg gacatcttta       600
     agagacgccc taatcacgga attcaagact cagacgcccc tggaggatct actaggaaga       660
     ctgtatcgga caccttttaa gggtaactta cgtctattct gtgaacaatt agaagataag       720
     tccagcgtaa ttataaataa gttagcatta gagaatgacc gaaataatat ggtggtttat       780
     acacaagcaa tggcaaccac aattaaaaat acaattcaac gctcactccc cgataggttg       840
     ttcatgacct tagcgaggta tgacatttca accgttcaaa aactaaagca aatcgcccaa       900
     caagaaggtc tatacgaaga cccaatttca aaaacattcg atagtcagcc aaaacttaac       960
     tcaaatccac ctaacaccta taaacataca aacattaacc aaatcaaaaa cactcacccc      1020
     aaccaacgat tcattcgccc ctttattcca ttaaatccca cacagaccca aaacactaac      1080
     gtaaacaatc aaaccccttt tagacaaatt cctccgacca gacaacagca acttaatcag      1140
     tacagaaatt tatacaacgg attcagaaca gacttacttc aggaccgtca aaacgacacc      1200
     cgaaactact atcagcctcc ccagccacca agagtgccaa ataagcgttt tagagaaagc      1260
     agcgaacaat cgcgaatgca gacaaatgaa aattttcacc agcacgaatt agattacgat      1320
     aacgaaactg aacactacat taataacgac gaacagttcc acgaagatca attacagaat      1380
     actcagacag aattttttac agatcagcaa tatcaacaag ctgaaaattt tccaatacca      1440
     gcctgggatc ccaccaatac atagagatca tgtttaataa ccacagatat agatgcatag      1500
     ttgatactgg ctcttcgata aacttgatga gctcaaactt tttcaatctt caagttaaag      1560
     ataagcaaat aactgtccga agtatgacag gctattctaa attaaataaa tatgtagacc      1620
     ttccagccaa cgggcttttt caacaaacgc aaaaattcta tattcattca ttttcacctt      1680
     attatgatat tctgttagga agaaaaatac taatggagaa taacggttta atagactact      1740
     ctcggaaaga aacaataatt aacgaaagaa cattcattca caaagaatta gatccatgtg      1800
     atgagaacta ttcggaaaac gttaatgcac tcttacaaga aaacaacttt acatcagaaa      1860
     taaactatgc catggacaac aacatagact cagaacacac atacagacta gaacatttaa      1920
     atagtgagga aaagtacaga cttacaaatt tattaaaaga gttcaatgac attcaatatt      1980
     ccaaaaatga aaaccttaca ttcacaagta taatacgtca cgatataaaa accactcatg      2040
     aaaacccagt ttacaaaaga ccatactcgt acccgttttc ctacgaagca gaagtaaata      2100
     agcaaattga ggaaatgtta aaacaaggca ttatacgcga aagcgactcc ccttattgca      2160
     gtccattatg gattgtcccc aaaaagatgg atgcctctgg caaaccgaaa ttcaggttgg      2220
     tcgtggacta tcgaaattta aatgaaataa caataaatga taaatttccg attcctaaca      2280
     tggacgaaat actaggcaaa ttaggaaaat gccagtattt tactacaatt gacttagcaa      2340
     aaggctttca tcaaatcgaa atggacccta agtctatacc aaaaacggcg ttttcgacca      2400
     aacacggtca ctatgagtac actcgcatgc catttggctt aaaaaatgct cctgcaacct      2460
     tccaacggtg catgaattac gtcctaaaag acctcataaa taagcattgc cttgtttatt      2520
     tagaagatgt gatcatctat tcaacatctc tgaacgaaca cctagactca ctgagaaagg      2580
     tttttgagaa acttaaagaa gccaatctta aactccaatt ggacaaatgt gaatttttaa      2640
     aaaagcaaac aaatttctta ggtcatatta taagtccaga aggcatacga cctaataaag      2700
     agaaagttaa ggcaatcgaa aaatttcctc tcccaaagac accaaaagaa atcaaatctt      2760
     ttttaggctt atgcggatac taccgtaagt tcattccaga ttttgcaaag attgcaaaac      2820
     ctctgacaat atttctaaaa aaaggagcta aaatagacac aagaaacgaa gaatacaata      2880
     aatcatttga aaaattgaaa acactcataa tgaacgaccc aattttgatt tgccctgatt      2940
     tcacaaaaac atttcaagtc actactgacg ctagcaattt cgccatagga gccgtgttat      3000
     cacaagacaa taagccagta agctttgcaa gtagaacatt aaatgatcat gaacaaaatt      3060
     atagcactat tgaaaaagaa ctactagcaa tcgtttgggc aaccaaatat ttccgcccat      3120
     atttatatgg agtccccttt gagattttga gcgatcacaa accccttgtt tggctaaata      3180
     atattaaaga gcctaacata aaactacaac gttggcgaat tagacttagc gaatataatt      3240
     tcaaaatcaa atatttagaa ggtaaactta atcatgtagc agacgcttta tctcgcgtca      3300
     aaattgaaga aaacatggta ggcgaagaag aaaatatttc accagcagca acaatacaca      3360
     gttcatcaga aagcaacgaa acctacattg aaattacaga aaaacccata aactattttg      3420
     caagacaaat tgaatttata aaagatagcg tagaccgagt agagacaacg aaatactttt      3480
     ccaaaataaa actgaccatc aaatacactg acatgaccct gacaaaagca aaagatatcc      3540
     ttattaaata cttcttaaat aatagcagtg ttatttacct ggaaaatgat aaagactttt      3600
     tagtttttca aaaagcatat cgagaaacca ttaacccaca tagtaacgtg aaaattctga      3660
     aaagtatcat aatgttaaaa gacataaaat cttattctga atttaaagaa ttcattatta      3720
     ctcaacattc taaattgtta caccccggta ttgaaaaaat gatacgatta tttaaagaaa      3780
     ctcactattt tcccgattat aataaactaa ttcaaaacat tatcaatgat tgtgaagtct      3840
     gtaaccttgc aaagacagaa catagaccaa caaaactagt tttcgaaata actccagaga      3900
     caaaaaaccg acgcgaaatt tttgttattg acttttatgc tattgacaac gaacagtatt      3960
     tatcttgtat agacgtttat tcaaaatttg cttcacttat taaaacaaac agtagagatt      4020
     ggttagaggc aaaacgagcc cttactagaa tttttaacga catgggaaaa ccacagaaaa      4080
     ttaaagcaga caaggactcc gcgtttataa gcacttcttt aaaaacttgg ctaaacaacg      4140
     aagacataca aatagatatt accacaagta aaacaggaat agcagacata gaacgccttc      4200
     ataaaaccat aaatgaaaaa atcagaatta tcaatactga aaacaataga gaaaataaag      4260
     aaacacgaat ggaaacaatt ttatacatat acaatcacaa gactaaacat aacacaaccg      4320
     gacagatacc ggctaacatc cttctttacg cagacacacc tacttatgat acccagatga      4380
     ttaaagaaat gaaaatcaaa aatcttaaca aaaaacgaca ggatttcgaa atcgacacaa      4440
     gtttagacaa gcacccttaa cacgcgcaaa atcaaagaat ccctttagaa aaacaggcag      4500
     aatagaacaa ttagacgaaa aacattataa cgaaaataat agaggtcaaa acgttattca      4560
     ttacaaaagc aaatttaaaa agaaaaagaa agttaacgac agcaaatact tgcagcaaac      4620
     cgacacctcc caatcatcgg acttataatc accataataa cttgtattgc gacacaaact      4680
     acagcaggaa caatcgaaat caacccaata gaaaacaatc aaggatttat cttgtttgaa      4740
     tctggaacaa tacaaatccc catcaccttt atgcatcact gtctcaccat aaatattaca      4800
     gaaattgaag aaacatttaa tagtataatt aaacaatgtc aagaatttaa aaatgtcaca      4860
     caaattaaat atttaaccga gaaaatggaa agagaaataa atggcatacg catttcaaaa      4920
     cgaaacaaac gaggactggc taactttgta ggttccacat taagatatct ttttggcaca      4980
     ctagacgaag acgacagaca acatattgaa caacaaattt cgactctttc acaagacaca      5040
     gtacaggtca gcactctaaa ccacgttatt gacagtctca ataatggcat agaaataatt      5100
     aataaccagt ccaattcttt gaaaaaggaa caaaaattga atctattaat atttaatatt      5160
     gaacatttta ccgaatatat cgaagacatt gaaatgggtt cacaactaac acgactagga      5220
     atatttaatc ctaaactact aaaacatgaa aatattggca accttaatta caaaaatctg      5280
     ataaacataa aaacttccgc ttggtataac gtacctacta atgaaatatt cctaatgtcc      5340
     cacattccta tgaattcaat tgaacgacca actttcatca ttgcacctca ccccgacaat      5400
     aatggccaaa ttattaagga aaatattgaa ggcaaattct actcacataa caactacgtt      5460
     ctaaatacac taacaaagaa tattgtcaaa gaccattgca tagctaacat aataaaacac      5520
     gaaacaccaa cttgtacttt tcaaaaatat cgtaaacaat cctatattca atacattaaa      5580
     ccaaatatac ttataacctg gaatatgacc agagaaaaac tttatcacaa ttgtaacggt      5640
     caagagattt atattgaaaa taataaaatt ataaaaatat ccaactgcac agcagaatta      5700
     aaacaaatta caatatctaa tagtattcaa caatacacaa atgtaatatt tactgaacac      5760
     aatgtaacaa aaatcgaacc aatgtcacac atagaaatta aggaaatgat tttgttaaac      5820
     aataagagta acacaattta cagaaacata ctaataatct tcatatccgt tttagtttta      5880
     atttacatat tttactttta tatgaaatgt aaaacagcgc cacacaaaat tattatctct      5940
     tacctaaaac caagtaaaac cactaacaaa aatatcgaac aagaaacaga gacaaaaaca      6000
     gaaatagctg aaattgcaaa tccagtacca cacttatatc cagaaataat cgcttgagga      6060
     caagctaata tctaaaaggt ggggg                                            6085
//
ID   Gypsy20S_DYa-LTR repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy20S_DYa-LTR; Phidippo.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-342
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 342 BP; 126 A; 63 C; 46 G; 107 T; 0 other;
     agtgacatat tcatttcttc atacgacata ttcactcttc atataaaaaa gctaaagccg        60
     atcttttgga aagcttcact ctccaaaagc ctcataaata acattccccc aagatacgaa       120
     ccgcttaacg gtaacgagct taatgatctg ttaagcttga catataaagc taagtagaac       180
     ttaaaaggct tatgttaatc ctctgtaaaa ggtttgctgg gccgaaagaa tacctttgta       240
     aattagttct taactgacct ctggtgaaac ttattcaaat aaagatcata aaaaggaaaa       300
     tatatttttt ttcattaaat ctatcaccaa aaaaagttta tt                          342
//
ID   GYPSY21-I_AG repbase;    DNA;    INV; 4383 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY21-I_AG is an internal portion of retrotransposon GYPSY21_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY21-I_AG; GYPSY21-LTR_AG; GYPSY21_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4383
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY21_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 7-7 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY21_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY22_AG, GYPSY23_AG,
CC   GYPSY24_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY21-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 1434-aa GYPSY21_AGp gag-pol like
CC   protein
CC   (pos. 68-4369).
CC   The sequence of the LTRs flanking GYPSY21-I is deposited as
CC   GYPSY21-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4369
FT                 /product="GYPSY21_AGp"
FT                 /translation="MSQEDLRNAIVQLTNLVAKQQQQIENLANRTFSTAAS
FT                 GSEKTIESLANGIQDFLYDPDAGVFFDAWYARYEDVFIQDGHSLDDAARVR
FT                 LLLRKLSTPLHDKYVNTILPKHPRDFSLDETVTKLKKLFGRQKSVFHSRYQ
FT                 CLQYAKSDADDFTSYAAMVNKHCEAFQLSKLTSDQFKALRFVCGLQSPRDA
FT                 DIRARLISKLEADETAVVEQGEAASKVTLENLVEECHRVANLKHDSQMVEN
FT                 KEACSVNAISRNQNHSSSKKTNKVPKTPCWKCGELHYVRECPFASHMCTRC
FT                 KQQGHKEGYCSSSKPAASKPFKQWKPKESMKTNGIYTVRNVGRKRKFVSVE
FT                 LNGVAVKLQHDSASDITIISNETWASIGRPPTQPTDESAVTASGSDLNLLA
FT                 EFQADITINNVTKTGRIFISDSADLNVLGIDTMDLFDLWSVPINSLVNVVH
FT                 QNSDQYVDRLKHQFPEVFRSTLGRCTKAQVKLYLKPDARPCYCPKRPVAYA
FT                 ALPKVDAELERLETNGIISPVQFSDWAAPIVVVRKSDNVSVRVCGDYSTGL
FT                 NNALECDRHPLPHPDDLFAELAGARYFTHLDLSDAYLQVEVEVESRKLLTV
FT                 NTHRGLFQYNRLPPGVKSAPGAFQRIIDSMVAGISGVKPYLDDIFIAGRTK
FT                 EEHDRILYAVLERVREYGFHLRLEKCRFALPQIGFLGLIVDKDGVRPDPSK
FT                 TEAIAKMPPPKDVKQLRSYLGAINYYGRFVPQMKHLRAPLDDLLKKDARWN
FT                 WTKECQKSFEQFKTILLSDLLLTHYDPSKEIIVAADASKYGLGAVVMHRFP
FT                 TGEVKAIAHASRSLTAAEMNYGQVEKEALALIFAVTRFHKMLYGRHFTLET
FT                 DHQPLLKVFGSKKGIPVYTANRLQRWALTLLLYDFEIKHISTMNFGYADFL
FT                 SRLMSSQRRPDEDYVIAAVYVESEAKAILEDSINNLPVTHQMIVAETRKDA
FT                 VLQQVISYINEGWPASVKLITDPDVKKFFVRREGLQVVDNCVMFGDRIVVP
FT                 SKFRKRIVRQLHRGHPGMERMKSLARSYIYWPNVDDDVAQFVRQCDACAEA
FT                 AKAPTKATLESWPLPDRPWQRVHVDFAGPIDGHHYFVIVDAYSKWPEIFRT
FT                 RSITTTTTLDLLRETFSRYGNPDTLVSDNGTQFTSGQFQQFCSENGINHIR
FT                 TAPYHPQSNGQAERFVDSLKRGLKKLGKGESPTLQHLQTFLSVYRSTPNRN
FT                 TPKGTSPAEAFLKRTMRTTLDLLRKPYPPTAAVNHKQNEQFNKRHGAVKRS
FT                 FVENDLVYVEQHVHNKKSWVPGRVIEPKGSVNYVVSLDLHGRQKLVRSHVN
FT                 QMRSRYGSETPGQEQQQLPWEVLLEEVGTTAAVKPAGNHVAINLNSTVPAD
FT                 VPVFENPPTDFNPPTTNEQPSASASESIASESVIAESIASESVASESIGCL
FT                 LRRSVRTPRIPRWLSSYDLY"
XX
SQ   Sequence 4383 BP; 1176 A; 1130 C; 1039 G; 1038 T; 0 other;
     tttggcgacg aggaaaagtt cagaagcatc tcgaaggtct ttttagcgaa atcatcaaat        60
     aacgaaaatg tcccaagagg atctgcgaaa cgccatcgtc caactcacga atctcgtcgc       120
     gaagcagcag cagcagatcg aaaatttagc aaatcgaact ttttcgacgg cggctagcgg       180
     aagcgagaag acaatcgagt cgttggcaaa tggaatccaa gatttcctgt acgatccgga       240
     cgcaggagtt ttctttgatg catggtacgc tagatacgaa gacgtcttca ttcaggatgg       300
     tcattctctc gacgatgccg cccgtgtgag attgcttcta cgcaaattaa gcacccctct       360
     gcacgataag tacgtgaaca ctattctgcc aaagcatcct cgcgatttct ctctggatga       420
     gaccgttaca aaactgaaga agttgtttgg tcgccagaag tcggtttttc actcccgtta       480
     ccagtgcttg cagtacgcca agagtgacgc ggatgatttt acttcgtatg ctgccatggt       540
     caacaaacac tgcgaagcgt ttcaactttc caagctcacg tcggatcaat tcaaagctct       600
     ccgatttgtc tgtggactcc aatcgccacg ggatgcggac atccgagcta gattgatttc       660
     gaaactggaa gctgatgaaa ctgcagttgt tgaacaagga gaagctgcaa gtaaggtgac       720
     tttggaaaac ctggtggaag aatgtcatcg tgtggccaac cttaagcatg actcgcagat       780
     ggtggaaaac aaggaggctt gctccgtcaa cgccatttcg cgcaaccaga atcattcttc       840
     ttcgaagaag accaacaaag tgcccaagac accctgctgg aaatgtgggg aactgcacta       900
     cgttcgtgaa tgtccgtttg catcgcacat gtgtactaga tgcaagcagc aaggacataa       960
     agaaggctac tgttcaagca gtaagcccgc tgcatccaag cctttcaagc aatggaagcc      1020
     caaagagagc atgaagacga atggcattta cactgttcgc aacgtcggaa gaaaacgcaa      1080
     attcgtctcg gtcgagctca acggggtagc agtcaagctt cagcacgact cggcgtccga      1140
     catcaccatc atttcgaacg aaacatgggc tagcatcgga cgaccaccca ctcaaccgac      1200
     cgatgaatct gctgtcacag cgtctggtag tgatttgaat ctcctcgcag agtttcaagc      1260
     cgacatcact attaacaacg tgaccaagac agggcgcatt ttcatctctg atagcgccga      1320
     tctcaacgtt ttgggaatcg atactatgga tctgtttgat ctgtggtccg taccgattaa      1380
     cagcttggtc aacgtcgtac atcaaaactc tgaccaatat gttgatcgcc tcaagcacca      1440
     gtttccggag gtttttcgaa gcacgctggg tagatgcaca aaagcgcaag tgaagttata      1500
     cttgaagcct gatgcccgtc catgctactg tccgaagcga ccagtggcgt atgcggctct      1560
     tcccaaagta gatgcggaac tcgaaaggct cgaaaccaac ggtataattt ctccagttca      1620
     attctcggac tgggcagcac caatagtcgt cgtacggaag tcggacaatg tttcggtccg      1680
     tgtgtgcggt gattattcta cggggctgaa caacgcgctg gaatgtgacc gtcatcctct      1740
     acctcatcct gacgatcttt tcgcggagct ggctggggca cgctatttca cacaccttga      1800
     cttatcagac gcctatctac aagttgaggt cgaggtggaa tcgcgcaagc tacttaccgt      1860
     gaacacacat cgcggccttt tccagtacaa ccgacttcct cccggagtca agtcggcacc      1920
     tggtgctttc caacgcatta ttgacagcat ggtggctggc atctctggag tgaaacctta      1980
     ccttgatgat atcttcattg ctggccgcac caaagaggag cacgaccgta tcctctatgc      2040
     tgttctcgaa cgcgtccgtg agtatggttt ccatttacgc cttgaaaaat gtcgtttcgc      2100
     gcttccccag atcggtttcc ttggattgat cgtcgacaag gacggtgttc ggcctgaccc      2160
     gtccaaaaca gaagccattg ccaagatgcc acccccgaag gacgtgaagc aacttcgctc      2220
     ctacctcgga gctatcaact attatggtcg attcgttcca cagatgaagc acctcagggc      2280
     tcccctggat gacctgctga aaaaggatgc tcgctggaac tggacaaaag agtgtcagaa      2340
     atcttttgag cagttcaaga ccattttact ctccgacctg ctgcttactc actatgaccc      2400
     atctaaggag atcatcgtcg cggcagacgc atcgaagtat ggtctaggcg ctgtcgtcat      2460
     gcatcgtttc cccaccggtg aggtgaaggc aatcgcacat gcttctcgct cactgacggc      2520
     agcggaaatg aactacggcc aagtggaaaa ggaagcattg gcgttgatat tcgctgtcac      2580
     ccgtttccat aagatgctgt acggacggca tttcactctc gaaaccgatc atcaaccgct      2640
     actcaaagtt ttcggctcga aaaaaggaat accagtttac acagccaatc gtctgcaacg      2700
     atgggctttg acacttctcc tgtatgactt cgagatcaag cacatctcga cgatgaattt      2760
     cggctacgca gacttcctgt cccggctgat gtcatcacag cgcagaccag atgaggatta      2820
     cgtcatagct gccgtctatg tcgaatccga agcaaaggcg attctcgaag actccatcaa      2880
     caatctgcca gtcacacatc agatgattgt ggctgagaca cgtaaggatg ctgttctgca      2940
     gcaagtgatt agttacatca atgaaggatg gccagcaagc gtgaagctaa tcaccgatcc      3000
     tgatgtgaag aagttcttcg tcagacgtga gggacttcaa gtcgtcgata actgcgtcat      3060
     gttcggcgat cgaatcgtcg ttccatcaaa attccggaag cgaatcgtcc gccagctaca      3120
     tcgtgggcac ccaggaatgg agcggatgaa gtctctggct cgcagctaca tttactggcc      3180
     gaatgttgac gacgatgtgg cgcaattcgt tcgtcagtgc gatgcatgtg ctgaagcagc      3240
     gaaggctccg acgaaagcaa ccctggaatc atggcctctt ccggaccggc cgtggcaacg      3300
     agtacacgtc gatttcgctg gcccaatcga cggacatcac tatttcgtga ttgtagatgc      3360
     ctactctaag tggcccgaaa tttttcgcac tagatccatc accacgacaa caactttgga      3420
     cctgcttcgt gaaacatttt cccgttacgg caatccagac acgctagtct cagataacgg      3480
     aacgcagttt acgagcggac agtttcaaca gttttgcagt gagaatggca tcaaccatat      3540
     tcgtactgct ccataccacc cgcagtcgaa tggccaagct gaacgtttcg tggattccct      3600
     caaacgcggc cttaagaagt taggtaaggg ggaatcacca acattacagc atctacagac      3660
     gtttctttca gtgtaccgat caacacccaa ccggaataca cctaagggaa cgtctccagc      3720
     cgaagcgttt ttaaaaagaa cgatgcgcac tacgttggat ctgttgagga aaccatatcc      3780
     tccgactgca gccgttaacc acaaacaaaa tgaacaattc aacaaacggc atggagcggt      3840
     caagcgatca tttgtagaga atgacttggt gtatgttgaa caacacgtac acaacaaaaa      3900
     gtcgtgggtt cctggtcgag tcattgaacc aaaaggatcc gttaactatg tcgtgtcgct      3960
     tgacttgcat ggaagacaga agctggttag atcgcatgtc aaccaaatgc gttctcgcta      4020
     cggttccgaa acccctgggc aagaacaaca acaacttcca tgggaagttt tattagaaga      4080
     agttggtact actgctgcag tgaaaccagc tggcaatcat gttgctatta atttgaactc      4140
     tacggtgcca gctgatgttc ctgtttttga aaatccgcca accgatttca acccgccaac      4200
     aaccaatgaa caaccatctg catcagcatc ggaatccatc gcatccgaat ccgtcatagc      4260
     cgaatctatc gcatctgaat ccgtcgcatc cgaatccatc ggatgcttgc tacgtcgttc      4320
     cgtacgaaca ccgagaatcc ctcgatggct ctcatcatac gacctttatt aaaaaggggg      4380
     aga                                                                    4383
//
ID   Gypsy21-I_Dpse repbase;    DNA;    INV; 3995 BP.
XX
AC   Unknown_group_247;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy21_Dpse;
KW   Gypsy21-LTR_Dpse; Gypsy21-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3995
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1120-1120 (2009).
XX
DR   Genome; Unknown_group_247; Positions   34322   30328.
XX
CC   Positions [1621-2043] - Reverse transcriptase
CC   Positions [3097-3573] - Integrase core
CC   LTRs are 87% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..3978
FT                 /product="Gypsy21-I_Dpse_1p"
FT                 /translation="MENTNGPPAGNMQKNEGPSGSEENRINRQQNANEEAM
FT                 RSTLLEENTQTLQQLVQLLSMKINADEIDKKNDAKLVVENFAKIIPEFNGE
FT                 NMSVQQWFINFELNAEAYGLNDKQKYVQARAKMTGTAALFLESTAVYEYGQ
FT                 LRHQLLQEFECERLCSAQIHNQLSMRVKIAGESFHEYILQMKRIAARGTTD
FT                 TESVIRYIVDGLNLKTDYKYTLYGCSSYKQLREKYEIYERTLAVDGGFAPK
FT                 QKDSQPFGKKSNFTKYERKQHCYNCGSLEHLRKDCRAALKCFRCNQTGHMS
FT                 KDCPSAAAVNVAYEEKRLKSLKINDVQVKGLIDTGADVSLLKMSVFGKMSG
FT                 IHLQASSSTLRGLGNNITRSAGQFTAEVEIDGMRLAHKFLVVADHAVGCEL
FT                 LLGHDFISKFTMTSTQGGYKFSPLPGEETEDIKQISIYNVVEENTDINIPS
FT                 QFRDAVQSMIQDFTEKKQTALCPIMLKIVPDEKIAPFRHSPSRVAISEADV
FT                 VKQQIDEWANAGIIRRSSSNFASRTVIVKKKDGCSRVCVDYRQLNKMVLKD
FT                 CFPVPIVEEVLEKLENAKVFTIMDLENGFFHVPVEESSKKYTSFIMKEGLF
FT                 EFNRAPFGFCNSPAVFIRFISFVFQNLRNENILDLYMDDIVIHAETADECL
FT                 GKLKKVFDVAAEYGLKMKWKKCRFLQSTITFLGHQVGGVEIRPGLEKTKAV
FT                 SKFPMPKNIKAVQSFLGLTGFFRKFIRNYSLIAKPLTNLLRKDVPFKMSLE
FT                 EQQAFATLKEALVKEPVLELYRRNAKTEIHTDASKDGFAAALLQWHEGQLH
FT                 PILFWSKKTSESEARQHSYIQEAKAIFLACKKFRQYILGTNFKLVTDCAAF
FT                 KQTLSKKDVPREVAQWVLYLQDYDFEVEHRPGERLKHVDCLSRYPIDVMMV
FT                 SSEVTARIKKAQQEDTMIKAVSEILKSKPYDNFKLKAGLVYKVVQGTDLLA
FT                 IPKSLEKEIITDAHNVGHFAAQKTMHTVQQSYWIPHLEGKVIQIIGNCMKC
FT                 IIYNKKLGKKEGFLHQIDKGSQPLYTIHVDHLGPMDATSKQYKYIFAMVDS
FT                 FSKFVWMYPTKTTGADEVLKKLREWSDVFGNPARIVSDRGAAFTSSSFEEF
FT                 VKEKNIEHIWSTTGVPRGNGQIERVNRSILSIISKLSSEEPGRWYKFVPRV
FT                 QRAINSTVHVSTKRCPFELMIGVKMRCGPDSDILQLIEKEMVDNFEDERQK
FT                 MRQEAKENIQQAQDRYKEQFDKKRKCEYGYKVGDLVAIRRTQFVTGRKMAS
FT                 EFLGPYEITNVKRGGRYNVRKAADVEGPSNTTTSNDNMKLWSFYVENEDAL
FT                 SSGTDD"
XX
SQ   Sequence 3995 BP; 1310 A; 808 C; 982 G; 895 T; 0 other;
     agagtattgc gcagtagaat tataatggaa aatacaaatg gaccaccagc cgggaatatg        60
     cagaaaaacg aaggcccaag tggatcagaa gaaaacagga tcaatcgcca gcaaaacgcg       120
     aacgaggaag cgatgaggtc aacactccta gaagaaaaca cacagacgct ccaacagctg       180
     gttcaactgc tctcgatgaa aataaatgca gatgaaatag acaagaaaaa tgatgcaaag       240
     ctggtagtgg aaaattttgc caaaattatt ccagaattca acggagaaaa tatgtcggta       300
     cagcagtggt ttattaactt cgagctaaac gctgaagcat acggactaaa tgacaaacaa       360
     aaatacgtgc aagcccgagc aaaaatgaca ggtacagccg ctctttttct cgagtccaca       420
     gcagtgtatg agtacggcca attgcgtcat caacttctac aggagtttga gtgtgagcgt       480
     ttatgcagtg cgcaaattca caatcaattg tctatgcgag tgaagattgc cggcgaaagt       540
     tttcacgaat atatactaca gatgaaacgc attgctgcac gtgggacaac agacacggag       600
     tcggtgattc gatacattgt cgacggactg aatttaaaaa cggattataa gtacaccttg       660
     tatggatgca gctcatacaa gcagctgcga gagaagtacg aaatctacga aagaacgctc       720
     gcggttgatg ggggttttgc cccgaaacaa aaagactcac agccgttcgg aaagaagtcc       780
     aatttcacca aatatgaaag gaagcaacac tgctacaatt gtggatccct ggagcatcta       840
     cgcaaggatt gccgagctgc attaaagtgt ttccgctgca atcagactgg acacatgtct       900
     aaggattgcc cgagtgctgc tgccgtaaac gttgcatacg aggaaaaacg cctgaagtct       960
     cttaaaatta acgacgtgca agtcaagggg ctcatagaca ccggtgcaga tgtttcccta      1020
     ttaaagatgt cagtgttcgg caaaatgagt ggtatccatc tgcaagccag ttcgtcaact      1080
     ttgaggggac ttggaaacaa catcacacgc tccgctgggc agtttacggc agaagtggag      1140
     atcgacggaa tgcgactggc acacaaattc cttgtggtgg ccgatcatgc cgtcggatgc      1200
     gaattgttgc ttggacacga ctttatatcc aagttcacaa tgacatcaac gcaaggagga      1260
     tataagtttt ctcccctgcc gggggaggaa actgaggaca tcaaacagat aagtatttac      1320
     aacgtggtcg aagaaaatac tgacataaac attccgtcgc agttcagaga tgccgtccaa      1380
     tcaatgattc aggactttac tgaaaagaag cagactgcac tgtgcccgat catgctgaag      1440
     atcgtaccgg acgagaaaat agcgccgttt cgacattcgc caagtcgagt ggccatcagc      1500
     gaagctgacg ttgtcaagca gcagatcgat gaatgggcca acgctgggat aatacgacgc      1560
     tcatcatcaa atttcgccag tcggactgta attgtcaaga aaaaggatgg ttgcagccgg      1620
     gtctgcgtgg actatcgtca gttgaacaag atggtcttga aagattgctt tcccgttcca      1680
     atcgttgaag aggtgctgga aaaactggaa aatgctaagg tgttcaccat catggactta      1740
     gaaaatgggt ttttccacgt tcctgtggaa gaaagcagca aaaaatatac gtcgtttata      1800
     atgaaggaag gcctctttga gttcaaccgt gcgcctttcg gtttttgcaa ttcgccagca      1860
     gttttcatcc gttttataag ttttgtattt caaaacctta gaaatgaaaa cattcttgac      1920
     ctgtacatgg acgatatcgt tatacacgct gaaaccgccg acgaatgcct gggaaagctg      1980
     aagaaggttt ttgatgttgc agctgaatac gggctgaaga tgaagtggaa gaagtgccga      2040
     tttctgcagt cgaccattac atttttgggc caccaagttg gaggagttga aattaggcct      2100
     ggattggaga aaaccaaagc cgtcagcaag ttcccgatgc cgaaaaacat aaaggctgtg      2160
     cagtcgtttt taggattaac tgggtttttc cgtaaattca taagaaacta ttcgctaatc      2220
     gccaaaccac tgaccaatct gctgcgaaaa gatgtcccat ttaaaatgag tctggaggag      2280
     cagcaggcgt tcgctacatt aaaggaagca ttggtgaaag agccggtctt ggaactttat      2340
     cgcaggaatg caaaaaccga gatacacact gatgcgtcaa aggacgggtt tgcagcggcg      2400
     ttgttacaat ggcacgaagg acaattgcat ccgatcttat tctggagtaa gaaaacctcg      2460
     gagtctgaag cacgacagca tagctatata caggaagcca aagcaatttt cctagcgtgc      2520
     aaaaaatttc gtcagtacat acttggaacc aactttaagc tcgtaacgga ttgcgccgct      2580
     ttcaagcaaa cgttaagcaa gaaggacgtt ccgcgggagg tagcccaatg ggtcctgtac      2640
     ttgcaggact acgactttga agtggaacac agaccaggag aacggctgaa gcatgtggat      2700
     tgcctgagta ggtacccaat tgatgtcatg atggtatctt cggaagtcac agcaagaatt      2760
     aagaaagccc agcaggagga tacgatgatc aaagcagttt ccgaaatttt gaaaagtaaa      2820
     ccatatgaca actttaagtt gaaagctggt ctcgtataca aagtggtgca aggcacggac      2880
     ttgctggcaa taccgaagtc attagaaaaa gaaataataa ccgacgctca caacgtagga      2940
     cactttgccg ctcaaaaaac aatgcacacc gtacagcaga gctattggat tccacatctg      3000
     gaaggaaaag taattcagat cataggaaac tgtatgaaat gtataatcta caacaaaaag      3060
     cttggcaaaa aagagggatt tctgcatcaa attgacaaag gatcacagcc gctgtatact      3120
     atacacgtgg atcaccttgg gcctatggat gccacttcaa agcagtacaa gtacatcttc      3180
     gcaatggttg atagctttag taagttcgta tggatgtatc ccacaaaaac aacaggagca      3240
     gacgaagttc tcaagaagtt aagggagtgg tctgatgtat ttggtaatcc ggcacgcata      3300
     gtaagcgatc gtggagcagc atttacatct tcaagctttg aggagtttgt caaggaaaag      3360
     aacatcgaac acatatggag caccacaggg gtaccaagag gaaacggaca aattgaacgc      3420
     gtaaaccgat ctattctcag catcatttcc aaattgtcgt cggaggaacc tggaagatgg      3480
     tataagttcg taccgcgagt tcaaagggct atcaacagca ctgttcacgt gtctacaaag      3540
     cgttgtccat ttgagctgat gatcggggta aaaatgcgtt gtggaccgga tagcgacata      3600
     cttcagctaa tagaaaaaga gatggttgat aattttgaag acgagaggca aaagatgcga      3660
     caagaggcaa aagaaaatat tcagcaggcc caggacagat acaaggaaca gttcgataaa      3720
     aagcggaaat gcgaatacgg atacaaggtc ggagatctcg tagccatacg tagaacacaa      3780
     tttgtaaccg gaagaaagat ggccagcgaa ttcttagggc catacgaaat aaccaacgtg      3840
     aaacgaggcg gacgctataa tgttcgaaag gcagcagacg tcgaaggacc aagcaacacg      3900
     accacaagca atgataacat gaaactatgg agcttttatg tagaaaacga ggacgcattg      3960
     tcatcaggga ctgatgacta atcaggatga ccgag                                 3995
//
ID   GYPSY21-LTR_AG repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY21-LTR_AG is an LTR of retrotransposon GYPSY21_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY21-I_AG; GYPSY21-LTR_AG; GYPSY21_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-167
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY21_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 8-8 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY21-LTR_AG is a long terminal repeat of GYPSY21_AG (its
CC   internal
CC   portion is deposited as GYPSY21-I_AG).
XX
SQ   Sequence 167 BP; 48 A; 33 C; 32 G; 54 T; 0 other;
     tgtagtaggc tatgactact atgactacca aacagtggga ttttgcctca gcagaatttc        60
     acttcctagg catagtagcc tatgccatgt ttagtaataa agcagttcat agttaaccac       120
     caaactagca agttggtttt tatttgctct ctgtgtgaac tgtaaca                     167
//
ID   Gypsy21-LTR_Dpse repbase;    DNA;    INV; 230 BP.
XX
AC   Unknown_group_247;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy21_Dpse;
KW   Gypsy21-I_Dpse; Gypsy21-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-230
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1121-1121 (2009).
XX
DR   Genome; Unknown_group_247; Positions   30327   30098.
XX
SQ   Sequence 230 BP; 92 A; 45 C; 73 G; 20 T; 0 other;
     tgtaagaagg agtgggccag ctggcctatt gaaggggcag cggggagcag caacagcagt        60
     aataacagca gcagaggaac agctgatgag cagtaacagc agcagcaaca gcagtagtaa       120
     cagcagacag agaagaagag gaacagagcg aagcagtgaa aaggagagaa cagcagcata       180
     cggacgcgac tcaagcagca gcagaaaatc agcagaaata agccgtaaca                  230
//
ID   GYPSY22-I_AG repbase;    DNA;    INV; 4383 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY22-I_AG is an internal portion of retrotransposon GYPSY22_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY22-I_AG; GYPSY22-LTR_AG; GYPSY22_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4383
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY22_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 9-9 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY22_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY23_AG,
CC   GYPSY24_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY22-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 1430-aa GYPSY22_AGp gag-pol like
CC   protein
CC   (pos. 68-4357).
CC   The sequence of the LTRs flanking GYPSY22-I is deposited as
CC   GYPSY22-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..4357
FT                 /product="GYPSY22_AGp"
FT                 /translation="MDPASKKTEIPAASVTTRAAAKSASTGTPTADSSSNL
FT                 PTGVLATDNSATAKPISSNTSTRGPVTAHSAAVKPKASSSTTSSTSVPGSS
FT                 VGEGTALSVSVRGITTAVTNMSTMFSFEPFDPTNCKIQRWLERLQIAFKIH
FT                 RVSEEDKRDYLLHYMGGATYDVLCNKLKNAEPQTKTFQEIVSILQEHFNPN
FT                 PLEILENFKFANRKQAENETLSTYLMELEKLAQTCNFGDYLDKALRNQFVF
FT                 GLQNRAIQSRLLEVRDLTLAKAKDIAFSMEMSNRGADEIHGAGAAYPVQHI
FT                 STTSKKKSKPTTVQRKTACYRCGNEEHFADKCRHRNAICNYCKKMGHLDKV
FT                 CRTKLQRAGVHTLEYEPDLPACDDDVVDVLNLRAVQNLAGKFLLEMEISDR
FT                 KLIFEVDTGSPVSLISNRDRLNCFPNTLMKKSNVKLKSYCNGVINVLGEIE
FT                 VRAKIKNLEIPLPLLVTKSDRNPLLGRNWMRTIKLDLNKFMHTSQEVSYCE
FT                 KENFTPCSILEALLKKYSEVFEAGIGKIEGLQASLTLRKETKPIFIKARPV
FT                 AFAVRDAVTNEINKLVEENVLEKVDHSEWATPIVPVKKSGGNVRLCGDYKI
FT                 TVNPNLLVDEHPLPTVEELFTNIAGGEKFSKLDLSQAYLQLEVSPDCRDIL
FT                 TLATHKGLYRPTRLMYGVASAPAIFQRLIEQILQDIPGVTAFIDDIRITGP
FT                 NDEIHLKRLEEVLKRLRKYNLKVNKAKCEFFADQIEYCGYLVDKHGIHKLH
FT                 TKIKAIQDMPAPKSVDELRSFLGLVNYYGRFFPNLSTVNYPLNNLLKDGIP
FT                 YVWDEHCQKAFAQVKREMQTERVLVHYDPNLPLILATDASPYGVGAVLSHK
FT                 FADGTERPLQYASQTLNKTQQRYSQIDKEAYAIIFGVHKFHQYLYGRKFTL
FT                 VTDNKPLSQIFSESKGLPTMSAMRMQHYAAFLQGFDYNIRHRKSVNHCNAD
FT                 ALSRLPLPSEDSDRRIEDSDLVEINVIETLPLTVPELAKATAVDPNVEELL
FT                 RALRTGKIILPKHCFGIDQNEFDLQSDCIMRGSRVYIPPLLREKVLQELHS
FT                 SHFGISRIKSLARSYCWWPNIDKEIENIVNNCQPCQETRANPPKVPIHCWE
FT                 KAEGPFQRVHVDYAGPFMGSYFFILVDAFSKWPEVRVVNNMTTETTINACR
FT                 EIFSTFGIPMVLVSDNGTQFSSTEFTRFLKLNGVIHKFSAPYHPATNGQAE
FT                 RFIQTLKSKLKAVKCNRTEIPEVLSNILLSYRKIIHPSTGFSPSLLVFGRQ
FT                 IRSRIDIMIPTSNSNNREIIKTKDFEIGQRVAAREYIKNNKWEFGKVTARL
FT                 GKLHYEIELDDGRTWRRHIDQMRAVGISMQKPINRNTSWQGRETTSHNLES
FT                 ETNTIPKNSSTPELMTDCGSRSIVQAQPSNPPPMSFPSEAPCSAEIPPEAK
FT                 LRRSARSIKTPQRLLL"
XX
SQ   Sequence 4383 BP; 1462 A; 876 C; 919 G; 1126 T; 0 other;
     aattggcgac gaggaagtac gaaaaccacg ttattatacc taagcaaact aagcttgtgt        60
     tgttttcatg gatccggcgt caaagaagac cgaaattcct gctgcttctg tcaccacacg       120
     ggctgctgct aaatctgcca gtaccggaac acctacggcc gattcttctt caaaccttcc       180
     tactggcgtc cttgctacgg acaattctgc tactgctaag cctatttctt cgaacacttc       240
     tactagaggc cctgttacgg cccattctgc tgcggtaaaa ccaaaggcat ccagttctac       300
     tacatccagc acatcggtgc ccggctcaag tgtgggtgaa ggtaccgctc tgtctgtttc       360
     ggtccggggg ataactactg ctgttacgaa tatgtctaca atgttctcat ttgagccgtt       420
     tgatccaaca aactgcaaaa tccagagatg gttggaaagg ttgcaaattg ccttcaaaat       480
     ccatcgagtt tccgaagaag acaaacgtga ttaccttctc cattatatgg gtggtgctac       540
     ttatgacgtg ttgtgcaaca agttaaagaa tgcagaaccg caaactaaaa cgttccagga       600
     aattgtttcc attcttcaag agcatttcaa cccaaatcct ttagaaattt tggaaaattt       660
     caagtttgca aatcggaagc aagctgaaaa cgaaacactg tctacgtatc taatggaatt       720
     ggagaagcta gcacaaacat gcaattttgg ggattacctc gacaaagcct tgagaaacca       780
     atttgtattc ggactccaaa accgtgcgat ccaatcgcgg ttgctcgagg tgcgcgactt       840
     aacattggct aaagcgaagg acatagcttt tagtatggaa atgtcaaatc gaggcgcaga       900
     cgaaatacac ggcgccggtg cagcgtatcc agttcagcac atcagcacca cgagcaagaa       960
     gaagagcaag ccaacaacgg ttcaaaggaa aacagcttgc tatcggtgtg gaaacgaaga      1020
     gcattttgcg gataagtgtc gacaccggaa tgcaatttgc aactactgca agaaaatggg      1080
     acacttggat aaagtgtgtc gtacaaaact acaacgagca ggagtacaca cactggagta      1140
     cgagcctgat cttcctgcct gtgacgatga cgttgtggat gtgctcaacc tgagagcagt      1200
     gcaaaatctg gcgggtaagt ttttgctgga aatggaaatc tctgatagaa aacttatttt      1260
     cgaggtggac acgggttctc cagtatcact aataagtaac agggatagat taaattgttt      1320
     tcctaacaca ttgatgaaga aaagcaatgt aaaattgaaa agttactgca acggtgttat      1380
     caacgttctt ggagagatcg aagtgagagc aaaaattaaa aatttagaaa ttcctttgcc      1440
     attgcttgtc acaaaatccg acagaaatcc tttgcttgga cgtaactgga tgagaactat      1500
     aaagttagat ttgaataaat ttatgcatac cagtcaagaa gtttcatatt gtgaaaagga      1560
     aaatttcact ccatgctcaa tactagaagc tctactaaaa aaatattcgg aagtatttga      1620
     ggcaggaata ggcaaaattg aagggttaca agcttcatta actcttcgca aagaaacaaa      1680
     acctattttt atcaaagcgc ggcctgtcgc atttgctgtc cgagatgctg taaccaatga      1740
     aatcaataag ttagttgagg aaaacgttct agagaaagtg gatcattctg aatgggctac      1800
     acctattgtg ccagtaaaaa aatcaggggg taatgtaaga ttatgtggtg actataaaat      1860
     cacggttaat ccaaacctat tagtagacga gcacccacta ccgacagttg aggaattgtt      1920
     cacaaatatt gcaggcgggg aaaaattttc taaattagac ctttcccaag cctatctgca      1980
     attggaggta agccccgatt gtcgggatat tttaacatta gcaacccaca aaggattgta      2040
     ccgccctacc agactaatgt acggggtggc atcggcacca gcaatatttc agaggttaat      2100
     cgaacagatt ctacaggaca ttccaggagt aactgctttt attgatgata ttagaattac      2160
     agggccaaac gatgaaatcc atttaaaaag attagaagaa gtactaaaaa gattacgaaa      2220
     gtacaatcta aaagtaaaca aagctaaatg cgagtttttc gcagatcaaa tagaatattg      2280
     tggataccta gttgataaac atggcataca caaactacat acaaaaatta aggccataca      2340
     ggacatgccg gctccgaaat ccgtagatga attaagatct tttctaggtt tggtaaatta      2400
     ttacggacgg ttcttcccaa atttaagtac tgtaaactat cctttaaaca atcttctaaa      2460
     agatggaata ccatacgttt gggacgagca ttgccaaaag gcattcgctc aggtaaaaag      2520
     ggaaatgcaa acggagagag tactggtaca ctatgatcct aaccttcctc tcatattagc      2580
     tacagatgcc tcaccctacg gggtaggtgc cgtccttagc cataaatttg ccgatggaac      2640
     cgaaaggcca ttacaatacg catcgcaaac tttaaacaaa actcaacagc gatattctca      2700
     gatcgacaaa gaagcctacg caatcatttt cggagtgcat aaatttcacc aatatttata      2760
     tggacggaaa tttactctgg taacggacaa caaaccctta tcacagatat tttcagaatc      2820
     caaaggatta ccaacgatgt cggcaatgcg aatgcagcac tatgcagctt ttttacaagg      2880
     gtttgattat aacattcgtc accggaaatc tgtaaaccac tgtaacgccg atgcattgtc      2940
     aaggttgcct ttaccgtcag aggattctga tagaagaata gaggattccg atttagttga      3000
     gatcaacgta atcgaaacat tgcctttaac agttcctgaa ttggcaaaag ccacagctgt      3060
     agacccaaat gttgaagaac tactgcgtgc cctcagaacg ggtaaaataa ttttaccgaa      3120
     acactgtttt ggtattgatc aaaatgaatt cgatttacaa agtgattgta ttatgcgggg      3180
     gagtagagtt tacattccgc ctttattaag agaaaaggta ttacaggagc ttcactcttc      3240
     tcattttggg atctctagaa tcaaatcttt ggcaagaagt tattgttggt ggcccaacat      3300
     agacaaagaa attgaaaata ttgtaaataa ctgccaaccc tgtcaagaga caagagcaaa      3360
     cccaccaaaa gtaccgatac attgctggga gaaagcagaa gggccttttc agagggtgca      3420
     tgtggattat gctggtcctt tcatgggaag ctactttttt attttagtgg atgctttctc      3480
     taaatggcct gaggtccgtg tcgtcaacaa catgactacc gaaaccacaa ttaatgcctg      3540
     cagggaaata ttcagtacat tcggaattcc tatggttttg gttagcgaca atggcactca      3600
     attttcgtca acggaattta ccaggttttt aaagctaaac ggggtgattc ataaatttag      3660
     tgcaccttac catccagcga caaatggaca ggccgagcgt tttattcaaa cactaaaatc      3720
     aaagctgaag gcagtaaagt gtaatcgtac agaaattcca gaagtgttga gcaatattct      3780
     attgtcttac agaaaaataa ttcatcctag cactggtttt tcgccctctt tgttagtatt      3840
     tggaaggcaa atacgcagcc gtattgacat aatgattcca acttcaaact cgaacaatag      3900
     agaaatcata aaaactaaag attttgaaat aggacaaaga gtagctgcaa gggagtacat      3960
     taaaaataac aaatgggaat tcggaaaagt aacagcaaga ttaggtaaac tgcattatga      4020
     aatagagtta gatgatggac gaacttggag acgtcacatc gatcaaatgc gcgctgtggg      4080
     tattagtatg caaaaaccca taaataggaa cacttcttgg caaggcagag agactacttc      4140
     gcataatttg gaatcagaaa ctaataccat cccgaaaaat agcagtacac cagaactaat      4200
     gacagattgt ggatctaggt caatagtaca agcgcaacca tccaaccctc caccaatgag      4260
     ttttccatca gaggctccat gttcagcgga aataccaccg gaagcaaaac tgcggcgatc      4320
     agcaaggagt atcaaaacac cacaaaggct actactgtaa ataactattt cggagggaag      4380
     agc                                                                    4383
//
ID   Gypsy22-I_Dpse repbase;    DNA;    INV; 8650 BP.
XX
AC   Unknown_group_236;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy22_Dpse;
KW   Gypsy22-LTR_Dpse; Gypsy22-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-8650
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1122-1122 (2009).
XX
DR   Genome; Unknown_group_236; Positions    7745   16394.
XX
CC   Positions [130-636] - Reverse transcriptase
CC   Positions [1699-2175] - Integrase core
CC   LTRs are 85% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2544
FT                 /product="Gypsy22-I_Dpse_1p"
FT                 /translation="MVPFPQTKWEMKLNFEHEKPFHCPPRRLSYSEKAQVQ
FT                 KMIDDYTEKGYIRTSESEYVTPIVLVKKNSGELRLCVDYRTLNKGMIKDNY
FT                 PTPLIDDLLDKLSGKRLFTKLDLKNGYFHVFMHKDSVKYTSFTTPMGQYEW
FT                 LRMPFGLRNASAVFQRFTNKIFAEMVKEDKVIIYMDDIMVATKDSDSHMEI
FT                 LQEVMRRLVENKLELRIDKCEFLQSEVKYLGYSISGNGIKPDTKGLQAVKG
FT                 FPVPTKTNEVQSFLGLCSYFRRFVNDFSTKAKPLYDLVKKDRKFEFGIVEL
FT                 ECFEQLKSNLLEAPILALYNPRDPTELHCDASSLGFGSILMQKKGDGRMHP
FT                 VFYFSKRTTITEAKYHSFELETLAIIYALQRFRVYVQGIPFKIVTDCNALT
FT                 MTLNKKELNPRIARWALELQNYDYKLEHRSGSRMQHVDALSRAVQILTVDT
FT                 NTFEENLIICQNRDNKLMELRETLQKSEHKHYEMRNGIIYRKKDNNTILFC
FT                 VPEEMEGHVLYKYLDELGHVGIDKMTDAISKSYWISNVRYKAKRHIENCLK
FT                 CIAYSAKHGKEEGFLHNIPKGSGPFEVVHIDHFGPVDKGRANKHVLVVIDA
FT                 FTKFVRLYTTKTTSTKEAVIAMKDYFRAYSRPRCIVSDRGSCFTSKEFEEF
FT                 LEQSNVKHVKIATGSPQANGQVERVNRSLGPMIAKLVDPEKGLHWDMVVET
FT                 VEHAMNNTVQRTINEHPSRMLFGVVQKGKVSDLLKDHLDELTEQRATRDIE
FT                 KIRAVAGTHQEKIQSYNKQAADSKRREPHVYVDNDLVMVRNFDTHTGVSKK
FT                 LIPKFKGPYKISKVLKNDRYLLEDVEGFQQSRIPYKGKKMKNDCNT"
FT   CDS           join(3044..4699,4703..6742)
FT                 /product="Gypsy22-I_Dpse_2p"
FT                 /translation="MSDLVGKEEFSAAQLREWLESLNLPKGGSKAAMAARL
FT                 NEIPVELRGQGPPAAETCENEREDEAAADQDSTKSERKEKNEKAPQAPGHN
FT                 NNHGEYRAEVEMLKLQIELLKLQSEREKEGRGENTTPAANNDAGVMLLNAA
FT                 KDMLPTYHGNISGNNDDVTTWIAQFTAVAKVNKLKDEKLLMLLMSKLKDKA
FT                 LVWLHSSPEHMSLPIDQLLNVMEDTFHPKESKLLLRRKFESRSWARGEEFS
FT                 MYFNAKVSLASRIVIDDEEFIDGVIEGIPDVGLRRQAHMQCFGAPYQLLKA
FT                 FEKIMLPKKYGSTEGANTGASPTPIRCYNCNSLGHVAGECRKPKRERGACY
FT                 GCGSMSHQVSHCDEKKYKVHNDYIYKFNIYISNYNNKCLSLDCLIDSGSPI
FT                 SFMKLSCLEHQSENNLNKVEERSRLSSNKIKEDDLSLYTFNKDKKNREIEF
FT                 ILTKNADYAYVGLNNSKLNIFGKIPSFVIINKNRINFELLVVADESMGYEA
FT                 VLGRDFMNLCKFKIVSDICKEKESETKNECLEKNECLGENECLEKNECLGE
FT                 NECLGNECLEKNEWKIENERLGEYECEVKDEGDKENKHEVESEGKVENECS
FT                 AMVECLEDSDTCESVKTNFNELPSQYPDKENDWELKVGTDCSQELEGRLKY
FT                 MFRTAYINAERPNLPQTKWEMKLNFEHEKPFHCPPRRLSYSEKAQLQKMID
FT                 DYTEKGYIRTSESEYVSPIVLVKKNSGELRLCVDYRTLNKGMIKDNYPTPL
FT                 IDDLLDKLSGKRLFTKLDLKNGYFHVFMHKDSVKYTSFTTPMGQYEWLRMP
FT                 FGLRNASAVFQRFTKKIFADMVKEDKVIIYMDDIMVATKDSDSHMEILQEV
FT                 MRRLVENKLELRIDKCEFLQSEVKYLGYSISGNGIKPDTKGLQAVKGFPVP
FT                 TKTNEVQSFLGLCSYFRRFVKDFSTKAKPLYDLVKKDRKFEFGIVELECFE
FT                 QLKSNLLEAPILALYNPRDPTELHCDASSLGFGSILMQKKGDGRMHPVFYF
FT                 SKRTTITEAKYHSFELETLAIIYALQRFRVYVQGIPFKIVTDCNALTMTLN
FT                 KKELNPRIARWALELQNYDYKLDHRSGSRMQHVDALSRAVQILTVDTNTFE
FT                 ENLIICQNRDNKLMELRETLQKSEHKHYEMRNGIIYRKKDNNTILFCVPEE
FT                 MEGHVLYKYHDELGHVGIDKMTDAISKSYWISNVRYKAKRHIENCLKCIAY
FT                 SAKHGKEEGFYTTYQKGQDHSR"
XX
SQ   Sequence 8650 BP; 3134 A; 1626 C; 2004 G; 1886 T; 0 other;
     atggtcccat tcccacaaac caagtgggaa atgaagttga atttcgaaca cgaaaaaccg        60
     tttcattgcc cacctagaag actgtcgtat agcgaaaaag cccaagtaca gaaaatgata       120
     gacgattaca cagaaaaagg ttacatcaga accagtgagt cagaatacgt tacgcctata       180
     gtactggtaa aaaagaattc gggagagttg agattgtgcg tcgattatcg cacacttaat       240
     aaaggaatga taaaggacaa ttacccaaca cctcttatag acgacctact agataaactg       300
     tcagggaaaa gacttttcac caagttagac ctgaagaatg gatacttcca cgtatttatg       360
     cataaagatt cagttaaata cacatcgttc acgaccccca tgggacaata cgaatggttg       420
     aggatgccgt tcgggttacg aaatgcatcg gcggtgtttc aaagattcac aaacaaaatt       480
     tttgcagaaa tggtaaagga agacaaagtt ataatataca tggacgatat tatggtagca       540
     acaaaagata gtgatagtca catggaaatt ttacaagaag tgatgagacg attggtagag       600
     aataaacttg aattaaggat tgataaatgc gaattcttac agtcagaagt taagtacctg       660
     ggctattcca tatcgggtaa cggaattaaa ccagatacga agggattaca ggcagtaaaa       720
     gggttcccag ttcccacgaa aacgaacgaa gtgcagagtt tcttagggtt atgttcttac       780
     tttagacggt tcgtaaacga tttttctacg aaagctaagc ccctttatga tttggtcaaa       840
     aaagacagga agtttgaatt cggtatcgta gaactagaat gtttcgaaca actcaaaagt       900
     aatttgttgg aagcaccgat cttggcactt tacaatccca gagatccgac agaattacat       960
     tgcgatgcaa gttcgttagg tttcgggtca attctaatgc agaagaaggg tgatggcaga      1020
     atgcacccgg tgttctattt ctccaagcgg acaacaatta ccgaagcaaa ataccacagc      1080
     tttgaactgg agacactagc gataatttat gcactacaac ggtttagagt atacgtgcaa      1140
     ggcataccct tcaaaatagt gacagactgc aacgcgctaa ctatgactct aaacaaaaaa      1200
     gaactcaatc cacgcattgc ccgctgggcg ttagagttac aaaattatga ctacaagtta      1260
     gaacacaggt caggaagcag aatgcaacac gtagatgcgc taagcagagc cgttcagata      1320
     ctcacggtag acacaaacac ctttgaagaa aatttaatta tatgccaaaa cagagataac      1380
     aaactgatgg agctgagaga aacgttacag aaatcagaac acaaacatta tgagatgaga      1440
     aacggaataa tatacaggaa aaaagataac aatactatcc tattctgcgt acccgaggaa      1500
     atggaaggcc acgtactcta taagtacctc gatgaactag ggcacgtcgg tatagacaag      1560
     atgaccgacg ctatatcgaa aagctactgg atctcaaacg taaggtataa agccaagcga      1620
     cacattgaaa actgtctaaa atgcatagcg tactcagcaa aacacggaaa agaggaaggg      1680
     tttttacaca acataccaaa agggtcagga ccattcgagg tagtacatat cgaccatttc      1740
     gggccagtcg acaaaggcag ggccaacaaa catgttttag tagtaataga cgcgttcacc      1800
     aaattcgtaa gactttatac gaccaaaacc actagcacaa aggaagcagt aattgcaatg      1860
     aaagattatt tccgagctta cagtagaccc agatgcattg tgtcagacag aggaagctgt      1920
     ttcacgtcaa aagagtttga agaattctta gaacagagca atgttaaaca cgtaaagata      1980
     gcaacagggt cgccacaggc caacgggcag gtagaaaggg tgaacagaag tttgggaccc      2040
     atgattgcaa agcttgttga cccggaaaaa ggattacatt gggatatggt agtggaaaca      2100
     gtagaacacg cgatgaacaa cacagttcaa agaacaatta atgaacaccc gagcagaatg      2160
     ttgtttgggg tcgtacaaaa aggaaaggtt tcagatttac taaaagatca tctagacgaa      2220
     ctaaccgaac aacgggcaac aagggatata gaaaagatta gagcagtagc aggcactcat      2280
     caggaaaaaa tacagtctta taacaaacaa gcagcagatt caaagcgaag ggagccacac      2340
     gtgtacgtag ataatgatct agttatggtg agaaatttcg acactcatac aggggtgtct      2400
     aaaaagctta tcccgaagtt caaaggacct tataagatat caaaggtgtt aaaaaatgat      2460
     aggtatttgc tagaagatgt agagggattt caacaatcaa ggatcccgta taaaggaaaa      2520
     aaaatgaaaa atgattgtaa cacgtaaact tagaatgtta agagtaaacc acacccaact      2580
     gtaataaatc aacctatcta gaaactaact taaatttaag gagttcagga gcactccagt      2640
     caggatggcc gaattgtagc aaggtaataa ttagtgaggc attcaactag tatttaaaat      2700
     agcatacagc gcgcattggt atttaccgca ccatcgatac actcggcggg aaataccaat      2760
     agtgagatat cggataagaa acatcgataa gagagtaagt tcactttgta aatggcgatt      2820
     gtgagagatg gacgcgcagc taataaaaaa gagttatatc aaatcgccgg gcttgtgttt      2880
     ttatacctag acagttcact cacgcaccaa tattggtcac tacaattccc gggttagacg      2940
     gcctacaatt tcagaagtgg gatacgatca atcgccgcca gtgaaaaata gcgaaaattt      3000
     ttcttttctc gtccgtcgaa gacgccatcg ctgaaaaaaa aacatgtcgg acttggtcgg      3060
     caaggaggag ttctcggccg cccagctgcg cgaatggctg gagtccctca atctaccaaa      3120
     aggtggaagc aaagctgcca tggcagcgag acttaacgaa ataccagtag agctgcgggg      3180
     acagggacca ccggcagccg aaacatgcga gaacgagagg gaagatgagg cagccgcaga      3240
     tcaagactcg acgaagagcg aacgcaaaga gaagaacgaa aaagcaccgc aagcgcctgg      3300
     gcacaacaac aaccacggcg aatatcgagc agaggttgaa atgttaaaac tgcaaatcga      3360
     gctgctgaag ctgcagagcg agagggagaa ggaagggaga ggagagaaca caacaccagc      3420
     cgccaacaat gacgctggcg tcatgttgct aaatgccgcc aaagacatgt tgccaacata      3480
     tcatggcaac atttctggaa acaacgatga cgtcacaact tggatcgcgc agtttacggc      3540
     cgtcgcaaaa gtgaacaaac tgaaggatga gaagctacta atgctgctaa tgtcgaagct      3600
     taaggacaaa gcattggtgt ggctgcattc gagtccggag cacatgtcgc tgccaatcga      3660
     tcagttgttg aacgtcatgg aagacacttt ccatcccaag gaaagcaaac tgttgctccg      3720
     tcgcaagttc gagtcccgtt catgggcacg tggcgaggag ttctcgatgt acttcaacgc      3780
     caaagtgtcg ctggcatccc gcatagtcat tgacgacgag gagtttattg acggagtcat      3840
     cgaaggtatc ccagatgtag gcctgcgtag gcaagcccac atgcagtgct ttggcgctcc      3900
     atatcaacta ctcaaggcgt tcgagaagat catgctgcca aagaagtacg gttcaactga      3960
     aggggcaaac actggagcct cgccaacacc cattcgctgc tacaactgca actctttggg      4020
     ccacgtggca ggggagtgcc gcaagcccaa gcgcgaaaga ggagcgtgct acggatgcgg      4080
     cagcatgagt caccaggtgt cacactgtga cgaaaagaag tacaaggtac ataacgatta      4140
     tatatacaaa tttaatatat acattagcaa ttacaataac aaatgcttgt ccttagattg      4200
     cctcatcgac tcagggagcc caataagttt tatgaagtta tcgtgtctag agcaccagtc      4260
     ggaaaataac ctaaataaag tggaagagcg ctcacgatta agttcgaaca aaatcaaaga      4320
     agatgattta agtttatata cgtttaacaa agacaagaaa aacagagaaa ttgaatttat      4380
     tttgactaaa aatgcggatt acgcttatgt tggactaaac aatagcaaac ttaacatctt      4440
     tggtaaaata cccagttttg taattattaa caaaaatcga atcaactttg aattactagt      4500
     agtggcagac gagtcgatgg gctatgaggc tgtgttaggt agggatttta tgaatttatg      4560
     caaatttaaa attgtaagtg acatttgcaa ggagaaggag agtgagacaa aaaatgagtg      4620
     tttagaaaaa aatgagtgtt taggagaaaa tgagtgttta gaaaaaaatg agtgtttagg      4680
     agaaaatgag tgtttaggat aaaatgagtg tttagaaaaa aatgagtgga aaatagagaa      4740
     tgagcgttta ggagaatatg agtgtgaagt aaaagatgag ggtgataaag agaataagca      4800
     tgaagtagaa agtgaaggca aggtagaaaa tgagtgttct gcaatggttg agtgtctgga      4860
     agacagcgat acctgcgaga gcgtaaaaac caatttcaac gaactaccaa gccagtatcc      4920
     agacaaagaa aacgactggg agttgaaagt agggacagat tgtagccaag aactcgaagg      4980
     acgacttaaa tacatgttta ggacagcgta tataaacgca gaaagaccaa acttaccaca      5040
     aaccaagtgg gaaatgaagt tgaatttcga acacgaaaaa ccgtttcatt gcccacctag      5100
     aagactgtca tatagcgaaa aagcccaact acagaaaatg atagacgatt acacagaaaa      5160
     aggttacatc agaaccagtg agtcagaata cgtttcgcct atagtactgg taaaaaagaa      5220
     ttcgggagag ttgagattgt gcgtcgatta tcgcacactt aataaaggaa tgataaagga      5280
     caattaccca acacctctta tagacgacct actagataaa ctgtcaggga aaagactttt      5340
     caccaagtta gacctgaaga atggatactt ccacgtattt atgcataaag attcagttaa      5400
     atacacatcg ttcacgaccc ccatgggaca atacgaatgg ttgaggatgc cgttcgggtt      5460
     acgaaatgca tcggcggtgt ttcaaagatt cacaaaaaaa atttttgcag acatggtaaa      5520
     ggaagacaaa gttataatat acatggacga tattatggta gcaacaaaag atagtgatag      5580
     tcacatggaa attttacaag aagtgatgag acgattggta gagaataaac ttgaattaag      5640
     gattgataaa tgcgaattct tacagtcaga agttaagtac ctgggctatt ccatatcggg      5700
     taacggaatt aaaccagata cgaagggatt acaggcagta aaagggttcc cagtccccac      5760
     gaaaacgaac gaagtgcaga gtttcttagg gttatgttct tactttagac ggttcgtaaa      5820
     agatttttct acgaaagcta agccccttta tgatttggtc aaaaaagaca ggaagtttga      5880
     attcggtatc gtagaactag aatgtttcga acaactcaaa agtaatttgt tggaagcacc      5940
     gatcttggca ctttacaatc ccagagatcc gacagaatta cattgcgatg caagttcgtt      6000
     aggtttcggg tcaattctaa tgcagaagaa gggtgatggc agaatgcacc cggtgtttta      6060
     tttctccaag cggacaacaa ttaccgaagc aaaataccac agctttgaac tggagacact      6120
     agcgataatt tatgcactac aacggtttag agtatacgtg caaggcatac ccttcaaaat      6180
     agtgacagac tgcaacgcgc taactatgac tctaaacaaa aaagaactca atccacgcat      6240
     tgcccgctgg gcgttagagt tacaaaatta tgactacaag ttagatcaca ggtcaggaag      6300
     cagaatgcaa cacgtagatg cgctaagcag agccgttcag atactcacgg tagacacaaa      6360
     cacctttgaa gaaaatttaa ttatatgcca aaacagagat aacaaactga tggagctgag      6420
     agaaacgtta cagaaatcag aacacaaaca ttatgagatg agaaacggaa taatatacag      6480
     gaaaaaagat aacaatacta tcctattctg cgtacccgag gaaatggaag gccacgtact      6540
     ctataagtac cacgatgaac tagggcacgt cggtatagac aagatgaccg acgctatatc      6600
     gaaaagctac tggatctcaa acgtaaggta taaagccaag cgacacattg aaaactgtct      6660
     aaaatgcata gcgtattcag caaaacacgg aaaagaggaa gggttttaca caacatacca      6720
     aaagggtcag gaccattcga ggtagtacat atcgaccatt tcgggccagt cgacaaaggc      6780
     agggccaaca aacatgtttt agtagtaata gacgagttca ccaaattcgt aagactttat      6840
     acgaccaaaa ccactagcac aaaggaagca gtaattgcaa tgaaagatta tttccgagct      6900
     tacagtagac ccagatgcat tgtgtcagac agaggaagct gtttcacgtc aaaagagttt      6960
     gaagaattct tagaacagag caatgttaaa cacgtaaaga tagcaaaagg tcgccacagg      7020
     ccaacgggca ggtagaaagg gtgaacagaa gtttgggacc catgatgcaa aagcttgtga      7080
     cccggaaaaa ggattacatt gggatatggt agtggaaaca gtagaacacg caatgaacaa      7140
     cacaattcaa agaacaatta atgaacaccc gagcagaatg ttgtttgggg tcgtacaaaa      7200
     aggaaaggtt tcagatttac taaaagatca tctagacgaa ctaaccgaac agcggacaac      7260
     aagggatata gaaaagatta gagcagtagc aggcactcat caggaaaaaa tacagtctta      7320
     taacaaacaa gcaacaaatt caaagcgaag ggagccacac gtgtacgtag ataatgatct      7380
     agttatggtg agaaatttcg acactcatac aggggtgtct aaaaagctta tcccgaagtt      7440
     caaaggacct tataagatat caaaagtgtt aaaaaatgat aggtattttc tagaagatgt      7500
     agaggggttt caacaatcaa ggatcccgta taaaggagtt tgggcggtgg caaatatgaa      7560
     gccgtggatt gaaaatggta ataatgcaaa tgtcacaggg aatcaaaatg aagaaaatga      7620
     ttgtaacacg taaacttaga atgttaagag taaaccacac ccaactgtaa taaatcaacc      7680
     tatctagaaa ctaacttaaa tgtaaggagt tcaggagcac tccggtcagg atggccgaat      7740
     tgtagcaagg taataattag tgaggcattc aactagtatt taaaatagca tacagcgcgc      7800
     attggtattt accgcaccat cgatacactc ggcgggaaat accaatagtg agatattgga      7860
     taagaaacat cgataagaga gtaagttcac tttgtaaaat ggcgattgtg agagacggac      7920
     gcgcagctaa taaaaaagag ttacattaaa tcgccgggct tgtgttttta tacctataca      7980
     gttcactcac gcaccgatat tggtcactac aattcccggg ttagacggcc tacaatttca      8040
     gaagtgggat acgatcaatc gccgccagtg aaaaatagcg aaaatttttc ttttctcgtc      8100
     cgtcgaagac gccatcgctg aaaaaaaaca tgtcggactt ggtcggcacg gaggagttct      8160
     cggccgccca gctgcgcgaa tggctggagt ccctcaatct accaaaaggt ggaagcaaag      8220
     ctgccatggc agcgagactt aacgaaatac cagtagagct ccggggacag ggaccaccgg      8280
     cagccgaaac atgcgagaac gagagggaag atgaggcagc cgcagatcaa gactcgacga      8340
     agagcgaacg caaagagaag aacgaaaaag caccgcaagc gcctgggcac aacaacaacc      8400
     acggcgaata tcgagcagag gttgaaatgt taaaactgca aatcgagctg ctgaagctgc      8460
     agagcgagag ggagaaggaa gggagaggag agaacacaac accagccgcc aacaatgacg      8520
     ctggcgtcat gttgctaaat gccgccaaag acgtgttgcc aacatatcat ggcaacattt      8580
     ctggaaacaa cgatgacgtc acaacttgga tcgcgcagtt taaggccatc accaaattta      8640
     aaattgtaag                                                             8650
//
ID   GYPSY22-LTR_AG repbase;    DNA;    INV; 172 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY22-LTR_AG is an LTR of retrotransposon GYPSY22_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY22-I_AG; GYPSY22-LTR_AG; GYPSY22_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-172
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY22_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 10-10 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY22-LTR_AG is a long terminal repeat of GYPSY22_AG (its
CC   internal
CC   portion is deposited as GYPSY22-I_AG).
XX
SQ   Sequence 172 BP; 64 A; 36 C; 47 G; 25 T; 0 other;
     tgtcataacc atcgaaatgt caacatcacc aaatggacca acctggtagc ggttggctga        60
     cagcggctgt caacaggggg aacgggaaaa aagtgcgcca ctggagcagc gtcgggagaa       120
     gcgtacaaac ggaaaagata cagaagtaca aatatacgag tgaaatacaa ca               172
//
ID   Gypsy22-LTR_Dpse repbase;    DNA;    INV; 355 BP.
XX
AC   Unknown_group_236;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy22_Dpse;
KW   Gypsy22-I_Dpse; Gypsy22-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-355
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1123-1123 (2009).
XX
DR   Genome; Unknown_group_236; Positions    7390    7744.
XX
SQ   Sequence 355 BP; 157 A; 9 C; 105 G; 84 T; 0 other;
     tgacatttgc aaggagaagg agagtgagac aaaaaacgag tgtgaaataa aaaatgagtg        60
     tttaggagaa aatgagcgtt tagaagaaaa tgagtgttta ggagaaaatg agtgtttaga       120
     aaaaaatgag tgtttagaag aaaatgagtg tttaggagaa aatgagtgtt tagaaaaaaa       180
     tgagtgttta gaagaaaatt agtgtttagg agaaaatgag tgtttagaaa aaaatgagtg       240
     gaaaatagag aatgagtgtt taggagaata tgaatgtgaa gtaaaagatg agggtgataa       300
     agagaataag catgaagtag aaagtggagg caaggtagaa aatgagtgtt ctgca            355
//
ID   GYPSY23-I_AG repbase;    DNA;    INV; 4394 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY23-I_AG is an internal portion of retrotransposon GYPSY23_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY23-I_AG; GYPSY23-LTR_AG; GYPSY23_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4394
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY23_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 11-11 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY23_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY24_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY23-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 1358-aa GYPSY23_AGp gag-pol like
CC   protein
CC   (pos. 280-4353).
CC   The sequence of the LTRs flanking GYPSY23-I_AG is deposited as
CC   GYPSY23-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..4353
FT                 /product="GYPSY23_AGp"
FT                 /translation="MQPQTVASAGSSTPTASSSSGTNAKMANMCVFEPFNP
FT                 VSSSFDRWMERLKIWFRINQIGDGDKKDYLLHYMGGPTYDVLCNKLQNADP
FT                 YTKSFDEIVALLRNHFNPAPLEILENFKFTSRKQLENESLSEYLMELEKLA
FT                 KSCNFDSYLDKALRNQFVFGIRNRGIQSRLLEVRDLTLSKAKDIAFGMEMS
FT                 LRGTEEMHGTSPRCEVQQVTANTKKISSTNNGQQRKCYRCGDTNHMANRCQ
FT                 HKQTVCSACGKRGHLQKVCLSRHNNRRQENTHYLEENDPKDVLHVSTVQNH
FT                 AGKFLLNLRVNQGVLTFEVDTGSPVSLINIKDKQKHLKDIEILQTDLRLVS
FT                 YSDNDIGVLGKLLVTVVVEGRKLVLPLYVTKSNKHPLLGRDWLRALNLDFN
FT                 RIFKSGTHTVSYCDRDDECKYSALNALLQKYPSVFSKEIGKVKGIQASLTV
FT                 REHTKPVYIKARQVPFALRDAVDKEINQFVNDGVWERVDHSEWATPVVVVK
FT                 KAGGKVRLCGDYKITLNPNLMVDEHPLPTIEELFVTVAGGKTFSKIDLSQA
FT                 YLQLEVRPEDRKFLTLSTHRGLFQPSRLMYGVASAPAIFQRLMEEVLQGIE
FT                 GVTVFIDDIRVTGPDSETHLQRLESVLQRLDKYNLRVNRDKCDFFAKQIEY
FT                 CGYMVDKDGIHKVRNKIDAIQNMPIPKNRDQVRSYVGLINYYGRFFPNLST
FT                 TLYPLNNLLKEDVPFQWTKECESSFKAVKKEMQSDRFLVHYDPSLPVTLAT
FT                 DASPYGVGAVLSHQYPDGTERPIQYASQTLNRTQQKYSQIDKEAYSIIFGI
FT                 RKFHQYLYGRRFILITDNKPISQIFSETKGLPTMSTIRMQHYAAFLQGYDY
FT                 IVRHRRSSEHCNADAMSRLPTCTTDPMNEIEEPDFIEVNAIETLPLTVDEL
FT                 SSATIADDTVRELLRALRMGKSIDAKFRFGIDQNEFSLQKDCLLRGTRVYV
FT                 PPALRKNVLKELHSTHFGICRIKSLARSYCWWEGIDKDIENVVKDCQSCQV
FT                 SKANPPKTSFHCWNTPNEPFQRVHADYAGPFMGYYYLILIDAYSKWPSVYV
FT                 VNNTTTDTTIRVCREFFSTFGIPSVFVSDNGPQFTSADFTKFLKLNGIVHK
FT                 LIAPYHPATNGQAERFVQTMKSKLKSLNCDRSQVHSEICNILLNYRKMIHP
FT                 ATGFSPSMMVFGRQIRSRLDLMIPSDDPERSEIQNKIRELTVGSKVAAREY
FT                 LHNNKWSFGTIKERLGKLHYLVQLGDGRIWKRHIDQLRSVGDNLPISTEDS
FT                 ILLRAEEPNSHTEDLTVTSDLPSTQTPLTDTQSSTTNVSDSAHPTIQTVPV
FT                 RSKVIQSSTSTECATFEGTSGSSGLTADSGLRRSTRTIKPPQRLDL"
XX
SQ   Sequence 4394 BP; 1349 A; 902 C; 949 G; 1194 T; 0 other;
     atttggcgac gagaaaaggg aattatacgt tttcagttac ttaaacagtt ccctacgttg        60
     gtgagaagga gcatttaccg ttattacttc tatcggtgct acgaatacgg tgaattttga       120
     tgctgttggc ggtactacgt ctggcgttgc tactgctgcc ggagcgtcag ctggattgat       180
     tacgggacga gctgctacca tttttttgct actaccggag atactactgc tgctcctact       240
     actcttactg ttgctgtgac tgctactgct tgtatatcga tgcaaccaca aaccgtggcg       300
     agcgctggat cttccacacc tactgcttct tcttcttccg gtaccaacgc aaaaatggct       360
     aatatgtgtg ttttcgagcc tttcaacccc gtgtcatcat cgttcgatag atggatggaa       420
     cggctaaaaa tttggtttag aatcaaccaa attggagatg gcgataaaaa ggactacctt       480
     ctacattaca tgggcggccc tacgtacgac gtattatgca acaagctgca aaacgccgat       540
     ccctacacga agtcattcga cgaaatcgtt gcactcctga gaaatcactt caaccctgca       600
     ccgctagaaa tcctagaaaa cttcaagttt actagccgta agcaattgga gaacgaatca       660
     ttgagcgaat acttaatgga gttagagaag ctggctaaaa gctgcaattt tgattcgtac       720
     ttagacaaag cgctgagaaa tcaatttgtc tttggcattc ggaatcgtgg aatacagtca       780
     cgattgctgg aagtacgcga tcttacacta tccaaagcca aggacattgc gtttggaatg       840
     gaaatgtcat tgcgtgggac cgaggaaatg catggaacca gcccgagatg tgaagtgcaa       900
     caagttacgg ccaatacaaa gaaaatatca tcgacaaaca acggtcaaca gcgaaagtgc       960
     tacagatgcg gcgatacaaa tcacatggct aatagatgcc agcacaagca aacggtttgc      1020
     agcgcttgtg ggaaaagagg acatctacaa aaagtgtgtt tgtctcgcca caacaacagg      1080
     cgtcaggaga acacacatta tttggaggaa aacgacccaa aggatgttct tcatgtgagc      1140
     acggtccaga atcatgctgg taagtttttg ttgaatctga gggtcaatca aggtgtacta      1200
     acattcgagg tcgacactgg atcgccggta tcattgataa acataaagga caaacaaaaa      1260
     catctcaaag acatagaaat tttgcaaacg gacttaagac tagtaagcta ttcggacaat      1320
     gacataggtg tgttgggaaa attattggtc acagtagtgg tagagggaag aaaactcgta      1380
     ttgccactgt atgtaacgaa gtccaacaaa caccccttgc tgggacgtga ttggttacgt      1440
     gcattaaatt tagattttaa tcgcattttc aaatctggca cacacactgt ttcatactgc      1500
     gatagggatg atgaatgcaa gtacagtgca ttaaatgcct tacttcagaa atatccatca      1560
     gtattcagta aggaaattgg aaaagtaaaa ggaattcaag cttcactaac agtacgggaa      1620
     catacaaaac ctgtgtatat taaagcaaga caggtgccgt ttgcgcttcg tgatgcagtt      1680
     gataaagaaa ttaatcaatt tgtaaatgat ggtgtatggg agcgcgtaga ccattctgag      1740
     tgggcgactc ctgtcgttgt ggtaaaaaaa gctggtggta aggtacggtt atgcggagac      1800
     tataaaatca ccttaaaccc aaatttaatg gtggatgagc accctctccc tacaattgag      1860
     gaactttttg tgactgtcgc tgggggtaag acattctcta aaatagatct atcccaagca      1920
     tacttacaac ttgaagtacg accagaggat agaaaatttc tcacccttag tacacataga      1980
     ggattgttcc agccatcaag gctcatgtat ggtgttgcgt ctgccccagc tattttccag      2040
     cgtctgatgg aggaggtgtt acaaggaata gaaggagtga cagtttttat agatgatatc      2100
     cgtgttactg ggccagatag tgaaacccac ttacagaggt tggaatcggt attgcaaagg      2160
     ttagacaagt acaatttgcg agtgaatagg gataaatgcg attttttcgc caagcaaatc      2220
     gagtattgcg gctatatggt tgataaagat ggcattcaca aagttcgtaa taaaatagac      2280
     gctattcaga atatgcccat tcctaagaac agggatcaag tacgatcata cgtaggtttg      2340
     ataaactatt atggaagatt ctttccaaat cttagcacga ctttataccc acttaataac      2400
     ttattaaaag aagatgttcc attccaatgg acaaaggaat gcgaaagttc atttaaagcc      2460
     gttaaaaaag aaatgcaatc tgatcgattt ctcgttcatt atgatccttc actaccagtg      2520
     actttagcaa cggacgcttc gccttacgga gtgggagcgg tccttagtca tcaataccca      2580
     gatggtacgg aacggccaat tcaatacgcg tcccaaactc tcaatagaac acaacaaaag      2640
     tattcgcaaa tcgataaaga agcgtactcg atcatttttg gtattcgaaa atttcatcaa      2700
     tacctttatg gtcgtagatt tattttaata accgataaca aaccgatcag tcaaatattc      2760
     tcggaaacta agggacttcc tactatgtca actatacgta tgcagcatta tgcagcattt      2820
     cttcaaggtt atgattacat cgtgcgacat cgtcgttcat cagaacactg caatgccgac      2880
     gccatgtctc ggttaccgac atgcacgact gatcccatga atgaaataga agaacctgat      2940
     tttattgaag tcaatgccat cgaaacatta cccctcactg ttgatgagtt aagttcagct      3000
     acaattgcag acgatactgt ccgtgaattg cttcgagcct taagaatggg aaagagcatt      3060
     gatgctaaat tccgatttgg catagatcag aatgaattta gtttacagaa ggattgctta      3120
     ctccgcggta ctcgtgttta tgtacctcct gctctacgta aaaatgtttt aaaagaactt      3180
     cactcgacac atttcgggat ttgcagaatt aagtctctag ccaggagcta ttgttggtgg      3240
     gagggcattg ataaagacat cgaaaatgtg gttaaggatt gtcaatcctg ccaagtgtcg      3300
     aaagctaatc ctcctaaaac atcattccac tgttggaata ctccaaatga accatttcaa      3360
     agagttcacg cagattacgc aggaccgttt atgggatatt actatctgat tttaatcgat      3420
     gcctattcta agtggccttc ggtttatgta gtaaacaaca caactactga tacaacaata      3480
     cgagtgtgca gggagttttt cagtactttt ggaatcccat ctgtgtttgt tagtgacaat      3540
     gggccccaat tcacttcagc tgattttaca aaatttttaa aactaaatgg aatagtacat      3600
     aagcttattg ctccatacca tccggccact aatggacaag ctgaacggtt cgtacaaaca      3660
     atgaagtcca aattaaaatc tttaaattgc gatcgttctc aagtccatag tgaaatatgc      3720
     aatatccttt taaactatcg caaaatgatt catcctgcca ctggtttctc tccttcaatg      3780
     atggtgtttg gtcgacagat tcgttcaaga ttggatctta tgattccatc ggatgaccct      3840
     gagaggagtg aaattcagaa taaaattcga gagttgacag ttggctcaaa agttgctgct      3900
     cgagaatacc tacataacaa caagtggagc ttcggcacta taaaagaacg gttgggtaaa      3960
     ttacattatt tagtacaact tggagacggt cgaatttgga aacggcacat tgatcaactg      4020
     cgtagtgtgg gcgataatct tcccatatct accgaggatt caattttatt gcgcgcagaa      4080
     gagcccaata gccacactga agacttgact gtgacctctg acttaccctc gacccagacc      4140
     ccgttaacgg acacacagtc ttcaacaacc aacgtttctg actctgcaca tccgactata      4200
     caaactgtcc ctgtgcgttc aaaggtgatc cagtcgtcga catctactga gtgtgccacc      4260
     tttgagggga cttccggttc gtcaggcttg acagcggatt ctggacttcg tcgatcaaca      4320
     agaaccatca aacctcctca acgattggat ctgtagcaga gcggaagtag gtgctttatt      4380
     tccgggggaa gagc                                                        4394
//
ID   Gypsy23-I_Dpse repbase;    DNA;    INV; 8600 BP.
XX
AC   Unknown_group_816;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy23_Dpse;
KW   Gypsy23-LTR_Dpse; Gypsy23-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-8600
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1124-1124 (2009).
XX
DR   Genome; Unknown_group_816; Positions    2314   10913.
XX
CC   Positions [741-1166] - Reverse transcriptase
CC   Positions [2316-2825] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           717..3194
FT                 /product="Gypsy23-I_Dpse_2p"
FT                 /translation="MYEELDRMLALGVIEESNSAWSCPVVLVRKPEKVRLC
FT                 IDSLKVNEVSRKDAYHMPLIDGILSRLPKAEYITSLDLKDAYWQIPLEEGS
FT                 RDKTSFTVPGRPLYQFKVMPFGLTNAPSTMSKLMDRIIPANLRNEVFIYLD
FT                 DLLIVSDTFERHLSVLKVLAEKLSAAGLTINIQKSKFCVPEVRYLGHVVGH
FT                 GIIGMDLDKIEAIKEYPAPKSVKQLRRFLGMTGWYHKFIKNFAAIAAPLTN
FT                 ALKQKRQFIWSEEAEAAFTALKNSMCEAPVLHTPNFEKPFFIHCDASHSGV
FT                 GGVLMQINEEGDEVPIAFMSRKLNKCQRANSVTEKECLAAILSIKKFRAYV
FT                 EGHQFTVITDHASLKWLMSQSDLSSRLARWALKLQGYSFNISHRKGSRNIV
FT                 PDALSRVFSPDLSEIEPEERIDLESEHFSSTDYVSLRAKVASSQAQMPDVK
FT                 VVGRHIYRRNEHATGERVADELCWKIWIPKGLIDSVLKMAHEHALSAHGGI
FT                 NKTLEKVPRYYYWPTLLRDVKEFINRCEICKCTKHPNRPLRPPLAKTGETE
FT                 RFFQKLYVDFLGPYPRSRSGNVGIFVVLDHFSKFPFIKPVRKFTADAIVPY
FT                 IEEQLFHCFGVPEKLVSDNGVQFKSHAFNSLLQQYGIEHAYTAVYAPQANA
FT                 SERVNRSILAAIKAYINTDQGNWDEQLSSVACALRSAVHSAVKASPYQLAF
FT                 GQQMITNGTTYQLLRQLEMLEDRWLHFSRDDSFDLMRGTAKEAMRAQHERN
FT                 EKTYNLRSKEVSFRVGQEVYHRNFQQSNFVKGFNAKLAPVFVKSRVRRQLG
FT                 QAYYELEDLQGRLIGKFHAKDIKQ"
FT   CDS           4600..6282
FT                 /product="Gypsy23-I_Dpse_1p"
FT                 /translation="MCEAPVLHTPNFEKPFFIHCDASHSGVGGVLMQINEE
FT                 GDEVPIAFMSRKLNKCQRAYSVTEKESLAAILSIKKFRAYVEGHQFTVITD
FT                 HASLKWLMSQSDLSSRLARWALKLQGYSFNISHRKGSRNIVPDALSRVFSP
FT                 HLSEIEPEERIDLESEHFSSTDYVSLRAKVASSQAQMPDVKVVGRHIYRRT
FT                 EHATGERVADELCWKIWIPKGLIDSVLKMAHEHALSAHGGINKTLEKVRRY
FT                 YYWPTLLKDVKEFINRCEICKCTKHPSIPLRPPLAKTGETERFFQKLFVDF
FT                 LGPYPRSRSGNVGIFVVLDHFSKFPFVKPVRKFTADAIVPYIEEQLFHCFG
FT                 VPEKLVSDNGVQFKSHAFNSLLQKYGIEHAYTAVYAPQANASERVNRSILA
FT                 AIKAYINTDQGNWDEQLSSVACALRSAVHSAVKASPYQLAFEQQMITNGTT
FT                 YQLLRQLEMLEDRWLHFSRDDSFDLMRGTAKEAMRAQHERNEKTYNLRSKE
FT                 VSFRVGQEVYHRNFQQSNFVKGFNAKLAPVFVKSRVRRQLGQAYYELEDLQ
FT                 GRLIGKFHAKDIKQ"
XX
SQ   Sequence 8600 BP; 2473 A; 1751 C; 2120 G; 2256 T; 0 other;
     atttttgaca atttaaccat agttaataag aaaataacac aggaagaaaa agaggatagg        60
     gagtctaaac ggaaggcacg agctaaacta cgtcgggaag aatttgccag aaatccaagg       120
     ttagagaaaa aagctctggt atcgtcaata atatcagaag atctcaagcc atatgcagag       180
     gtcacattat tagacagaaa gcttgttgga ttaatagata caggggcatc tattagttgc       240
     attggtggag atgtggccag cgagctgctt gaaagccaat ttcaatttaa gcccatgaca       300
     tccacagttc ggacagcggg tgggcagtct cagagagtgg ttgggaagct taaagcggaa       360
     gtgggctata aaggtgttac cgagctgtta ccctatacat cgttccaacc ctaacgcagc       420
     ctctgtatct gggcattaac tcttggacca aatttggctt attgccagcc gatttgtatc       480
     cacaaggaag tgctaatgac acggtgaacc attgcgatga ggtgtggaag ccagaaaacc       540
     aacgtccttt atcggaggtg caacgagaac aactgaatag aaccattcag tgtcttccgt       600
     ctttcgcgga taatggttta ggaaaaacca cgttgttgtc ccatgtaata gatgtaggtg       660
     aggcaaagcc cacaaaacaa cgacactatg cagtgtcccc agctatcgag aaattaatgt       720
     atgaggagtt ggatcgcatg ttagcgctag gggtcatcga agaatccaac agtgcgtggt       780
     cttgtccggt agtactcgtc cgaaagccgg agaaggttcg tctttgtata gacagcctca       840
     aggtgaacga ggtgtctcgg aaggacgcgt atcacatgcc gctcatagat gggatcttaa       900
     gccggttacc aaaggcagaa tacataacta gcctcgacct gaaagatgcc tactggcaaa       960
     taccgctaga agaaggttct agggataaaa catcattcac agtgcctgga cggccgcttt      1020
     accagtttaa agttatgccg tttgggctta ccaatgcgcc gtctactatg tccaaactta      1080
     tggaccgcat tattccagcc aatcttcgaa acgaagtgtt tatatacttg gatgacctgc      1140
     ttatagtgtc agacaccttt gaaaggcatc tgagtgtgtt aaaagtatta gcagagaagc      1200
     tgtctgcagc ggggcttaca attaatatac agaagagcaa gttctgtgtg cctgaggtcc      1260
     gctatctggg gcatgtagtg ggtcacggta ttataggcat ggacttggac aaaatagagg      1320
     ccattaagga atatcctgct ccgaagtcgg tgaaacagtt gcgtcgattc ttgggtatga      1380
     cgggatggta ccacaaattt ataaagaatt ttgcggctat tgcggcgcct ctgacgaacg      1440
     ccctgaagca gaaacgccag ttcatttggt ccgaagaagc agaagctgca ttcacagctc      1500
     tgaagaactc aatgtgtgaa gcgcccgtct tacacacacc gaattttgaa aagcctttct      1560
     ttatccactg cgacgctagt cactcaggag taggaggggt actgatgcag ataaacgaag      1620
     agggcgatga agtaccaatt gcgtttatgt cacgaaaatt gaataagtgc caacgtgcta      1680
     actcggtgac ggaaaaggaa tgcttagctg ccattctgag catcaagaaa tttcgcgctt      1740
     atgtagaggg acatcaattt acggtgataa ccgaccatgc ctccttgaag tggctgatgt      1800
     cccaatcaga tctgagtagc agactggcca gatgggcttt gaagcttcag gggtattcct      1860
     ttaatattag ccaccgaaaa gggtctcgaa acatcgttcc agacgccttg tctcgggtct      1920
     tttccccaga tttgtcagag atcgaaccag aagaaaggat cgatttggag tcggagcact      1980
     ttagttcgac ggattacgtt tcccttaggg ctaaagtagc gagtagtcag gctcagatgc      2040
     cagatgtaaa ggtggtaggc aggcatatat atcgtcgcaa cgagcacgca acaggcgaaa      2100
     gggtagcgga tgaactctgt tggaaaattt ggatacccaa ggggctcata gattcggtcc      2160
     tgaaaatggc ccacgagcac gccctatctg cacacggagg cataaataaa acgctcgaaa      2220
     aggttccgcg ctactattat tggccgacgt tgttaagaga tgtcaaagag ttcataaacc      2280
     ggtgtgaaat ttgtaagtgt actaagcatc caaatagacc tttaagaccg ccactagcaa      2340
     aaacggggga aacagaacgg ttctttcaga agctctacgt agattttctg ggaccgtatc      2400
     ctagaagtcg tagtgggaat gtcgggatat ttgtggtgtt agatcatttt tccaaatttc      2460
     cgtttattaa acccgtaaga aaatttaccg ccgacgccat cgtaccatac attgaggaac      2520
     aattatttca ctgctttgga gtgccggaaa agctagtctc ggacaacggc gtccaattta      2580
     agtcccatgc attcaactcc ttgcttcagc agtatggcat agagcacgct tacaccgccg      2640
     tttacgctcc gcaggctaac gcgtccgagc gagttaacag atctatcttg gcagcaatca      2700
     aagcctacat aaatactgac caaggtaact gggatgagca gctcagcagt gtagcctgtg      2760
     cgttaagatc ggctgtgcac agtgccgtaa aggcgagtcc ataccagttg gcgtttgggc      2820
     aacagatgat cacgaatggt accacgtatc agttgttgag gcagctagag atgttagaag      2880
     atcgatggtt gcatttttct agggacgact catttgacct gatgcgtggc acggcaaagg      2940
     aggcaatgag ggctcagcac gaacgaaatg aaaagacgta taaccttcga agtaaggagg      3000
     tatcattcag agtgggacag gaggtttacc atcgaaattt ccagcaaagt aatttcgtga      3060
     aaggatttaa tgccaagttg gctcccgttt ttgtgaagtc ccgggtaagg cgacagttgg      3120
     gtcaagccta ttacgagcta gaggatctgc aaggacgtct gatcggcaaa ttccatgcca      3180
     aagatatcaa acagtagcac catggttaaa aatcgctcta agtgggaatc acccttttgg      3240
     tccttcttcc ccaaagtgtg attttggtag gggggatttg aagtggtttg aaagagtaac      3300
     gtataaaaaa aggtataaat actgggatcc acaaaaggga acatttggaa aagtaccaag      3360
     aagggatatt ggtctcccta tcttactcaa ctttgccgcc tcaattcaag ttaaaaggta      3420
     aacgaaggaa agcggttttt tttctgtttt tttgagttga aacttgtaaa ataattacgg      3480
     cgtcaattcg aaaatggagg attctcaagt ttaacgctgt attgtggggt ctcagactgt      3540
     gcagatctag cctcggtctc ttggaagaaa aactgttggc gaagacagac gtgctatttt      3600
     tgtccagtcc aagtataaag aaaaaaaaag aggaaaaaaa accgggaaaa gatcttaaca      3660
     gctgaaacca gcaaaaagaa agaaatattg tgcgtttata aagtaaaagt gtgctaagcg      3720
     ccaatttcaa ttggtatgta tttcagcgtc gctaatatac accacataca ctcgtggcgt      3780
     agggtagtgc tttttttatt gtagaaaatt aatttttcag attggcggtt agtaccggcc      3840
     taaacttcgg gcaatcgttt gggtacctgt ctgaacccca ataagaaagc tcgcaacaac      3900
     aatttccccg atattggggc ctccgcccgc gacaggggac ttatgctcct cgcccaacta      3960
     cagctccgta ccaaaaattc ccagcgctag gccgagcagc acaaagcgag aggcgtaaaa      4020
     gatcggctca tcagtcgctt tgcgggcgcg agccacttat gtgtcacgga cccgcgatat      4080
     attggaggcc gtccaagtct gcggaaattg ttaaagctat gtaaacggtc aaccaatttc      4140
     tacccgaaat atagatctgg gtctagacct attttcgttt ccccatacga agtgccgagg      4200
     agtgcccaga tgtgaagccg gcggcaacga ctgtcgtttt ttttttatat ccatcagtgt      4260
     aaccgctgat tcctaattta tgttatagag tcattagtgt aattagctta gtaaatttct      4320
     tttggttgtg ttttaaattc tgttcggaag aaatagcaag tggaatgtgt gacagggcga      4380
     aagtgaacaa cggttaaccg acagaggaga gcgtgagttt ttttttgttg taaaattatt      4440
     tctccagctt tcgttttagg aacgttgccg gaatggtacc acaaatttat aaagaatttt      4500
     gcggctattg cggcgcctct gacggacgcc ctgaagcaga aacgccagtt catttggtcc      4560
     gaagaagcag aagctgcatt cacagctttg aagaactcaa tgtgtgaagc gcccgtctta      4620
     cacacaccga attttgaaaa gccttttttt atccactgcg acgctagtca ctcaggagta      4680
     ggaggggtac tgatgcagat aaacgaagag ggcgatgaag taccaattgc gtttatgtca      4740
     cgaaaattga ataagtgcca acgtgcttac tcggtgacgg aaaaggaatc tttagctgcc      4800
     attctgagca tcaagaaatt tcgcgcttat gtagagggac atcaatttac ggtgataacc      4860
     gaccatgcct ccttgaagtg gctgatgtcc caatcagatc tgagtagcag actggccaga      4920
     tgggctttga agcttcaggg gtattccttt aatattagcc accgaaaagg gtctcgaaac      4980
     atcgttccag acgccttgtc tcgggtcttt tccccacatt tgtcagagat cgaaccagaa      5040
     gaaaggatcg atttggagtc ggagcacttt agttcgacgg attacgtttc ccttagggct      5100
     aaagtagcga gtagtcaggc tcagatgcca gatgtaaagg tggtaggcag gcatatatat      5160
     cgtcgcaccg agcacgcaac aggcgaaagg gtagcggatg aactctgttg gaaaatttgg      5220
     attcccaagg ggctcataga ttcggtcctg aaaatggccc acgagcacgc cctatctgca      5280
     cacggaggca taaataaaac gctcgaaaag gttcggcgct actattattg gccgacgttg      5340
     ttaaaagatg tcaaagagtt cataaaccgg tgtgaaattt gtaagtgtac taagcatcca      5400
     agtatacctt taagaccgcc attagcaaaa acgggggaaa cagaacggtt ctttcagaag      5460
     ctcttcgtag attttctggg accgtatcct agaagtcgta gtgggaatgt cgggatattt      5520
     gtggtgttag atcatttttc caaatttccg tttgttaaac ccgtaagaaa atttaccgcc      5580
     gacgccatcg taccatacat tgaggaacaa ttatttcact gctttggagt gccggaaaag      5640
     ctagtatcgg acaacggcgt ccaatttaag tcccatgcat tcaactcctt gcttcagaag      5700
     tatggcatag agcacgctta caccgccgtt tacgctccgc aggctaacgc gtccgagcga      5760
     gttaacagat ctatcttggc agcaatcaaa gcctacataa atactgacca aggtaactgg      5820
     gatgagcagc tcagcagtgt agcctgtgcg ttaagatcgg ctgtgcacag tgccgtaaag      5880
     gcgagtccat accagttggc gtttgagcaa cagatgatca cgaatggtac cacgtatcag      5940
     ttgttgaggc agctagagat gttagaagat cgttggttgc atttttctag ggacgactca      6000
     tttgacctga tgcgtggcac ggcaaaggag gcaatgaggg ctcagcacga acgaaatgaa      6060
     aagacgtata accttcgaag taaggaggta tcattcagag tgggacagga ggtttaccat      6120
     cgaaatttcc agcaaagtaa tttcgtgaaa ggatttaatg ccaagttggc tcccgttttt      6180
     gtgaagtccc gggtaaggcg acagttgggt caagcctatt acgagctaga ggatctgcaa      6240
     ggacgtctga tcggcaaatt ccatgccaaa gatatcaaac agtagcacca tggttaaaaa      6300
     tcgctctaag tgggaatcac ccttttggtc cttcttcccc aaagtgtgat tttggtaggg      6360
     gggatttgaa gtggtttgaa agagtaacgt ataaaaaaag gtataaatac tgggatccac      6420
     aaaagggaac atttggaaaa gtaccaagaa gggatattgg tctccctatg ttactcaacc      6480
     ttgccgcctc aattcaagtt aaaagggaaa cgaaggagag cggttttttt tctgtttttt      6540
     tgagttggaa cttgtaaaat aattacggcg tcaattcgaa aatggaggat tctcaagttt      6600
     aacgctgtac tggggggtct cagactgtgc agatctagcc tcggtctctt ggaagaaaaa      6660
     ctgttggcga agacaaacgt gctatttttg tccagaccaa gtataaagaa aaaaaagagg      6720
     actaaaaacc gggaaaagat cttaacagct gaatacagca aaaagaaaga aatattgtgc      6780
     gtttataaat taaaagtgtg ttaagtgcca atttcaattg gtatgtattt cagcgtcgct      6840
     aatatacacc acatacactc gtggcgtagg gtagtgcttt ttttattgta ggaaattaat      6900
     ttttcagatt ggcggttagt accggcctaa acttcgggca atcgtttggg tacctgtctg      6960
     aaccccaata cgaaagctcg caacaacaat ttcgccgata ttggggcctc cgcccgcgac      7020
     aagggactta tgctcctcgc ccaactacag ctccgtacca aaaattccca gcgctaggcc      7080
     gagcagcaca aagcgggagg cgtaaaagat cggctcatca gtcgctttgc gggcgcgagc      7140
     cacttatgtg tcacggaccc gcgatatatt gaaggccgtc caagtctgcg gaaattgtta      7200
     aagctacgta aaccgtcaac caatttctac ccgaaatata gatctgggtc tagacctatt      7260
     ttcgtttccc ccatacgaag tgccgaggag tgcccagatg tgaagccggc ggcaacgact      7320
     gtcgtttttt tttttatatc catcagtgta accgctgatt cctaatttat gttatagagt      7380
     cattagtgta attagcttag taaatttctt ttggttgtgt tttaaattct gttcggaaga      7440
     aatagcaagt ggaatgtgtg acagggcgaa agtgaacaac ggttaaccga cagaggagag      7500
     cgtgagtttt tttttgttgt aaaattattt ctccagcttt cgttttagga acgttgccgc      7560
     agtccatgga agcgctttca tcgctgtttc aacgcattta ttaaaacaaa tcaaggaagg      7620
     tcgtaagtga tcccaaaaac ataaagataa aatattggag tttgtttgtt attagcaact      7680
     atttattgta taaccgaaaa agaaaaaaat ctcacgtagt caggggcttc ttcgcttaag      7740
     agaggctggg cgctctccct tatgccttgc tggcaaccat aagcgcttac gccgcgcata      7800
     agagacagcc ctcttaagaa caaggcacaa acgggaagat gcgaggctgg tcgctctgac      7860
     gttcttttat gctttctact tgcggttgct ttcgctaatg cacttgaata actgacctgc      7920
     cataacgatc gctgcgcaca gtttttttta cattcccttt tgcatattta tttattatta      7980
     ttatctattt gcctaacata aaaactagag atatgtaccc ttcccttcca tcaatttgta      8040
     agttaaattt caatctaaat tgtattatta agagttaagc atttattagt ttacgagttg      8100
     cgatgcatgt gctattgctc aatatgaaat ataggattta acatgaatcg gggctagagt      8160
     tctaatatgc ggggaccatg ctgggcaaat gagggtaatg ggggatggga tcaccggatg      8220
     aaccgggagc ggtgatcatg gtagggtggg catgaggggt cacaacaaca ccgtggcacg      8280
     acttgtatgt gtgtatgtgt ccgtgtgcgt cgttaggtgt atttgctctt gtacatattt      8340
     gtgccgatac ttcgcttgca cgtgaaattt taatgagcgt tactgtgtca gtattatgat      8400
     tgttggagta gagctgtgtc ccgtccgttc tgggaaataa aaaaaacccc cccatttctt      8460
     gccgatgaag ccggaagccg gaacaagcac gtgcccggac gggagacgaa tcatcacctg      8520
     ctcagccttc cgtgaaggtt tggtaatatc caatatgcta cagttagttt attatttggc      8580
     gcccaacgtg gggcccgagt                                                  8600
//
ID   GYPSY23-LTR_AG repbase;    DNA;    INV; 162 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY23-LTR_AG is an LTR of retrotransposon GYPSY23_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY23-I_AG; GYPSY23-LTR_AG; GYPSY23_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-162
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY23_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 12-12 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY23-LTR_AG is a long terminal repeat of GYPSY23_AG (its
CC   internal
CC   portion is deposited as GYPSY23-I_AG).
XX
SQ   Sequence 162 BP; 59 A; 31 C; 37 G; 35 T; 0 other;
     tgttatatac aacattgaca gctatggcat gttggcagct ctgcgactgc tcgaacgagc        60
     agcactgctc gaaacaggaa gggagcgaat gaaatgtcat gcatacaagg aactgaataa       120
     agaaaacgcg tgtaacattt gtactgcatc aaaaatacaa ta                          162
//
ID   Gypsy23-LTR_Dpse repbase;    DNA;    INV; 2153 BP.
XX
AC   Unknown_group_816;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy23_Dpse;
KW   Gypsy23-I_Dpse; Gypsy23-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2153
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1125-1125 (2009).
XX
DR   Genome; Unknown_group_816; Positions     161    2313.
XX
SQ   Sequence 2153 BP; 553 A; 449 C; 530 G; 621 T; 0 other;
     tgtcgcaact gacaacaaac cggcaaggtt caaatgattg tcaaaattgt ggaatgtaga        60
     tgtgacctta cattcccaac cagtatcggg acagatgtgt ctttctagtt gtcattctgt       120
     tttgtttgtt ttggctttat cactttatgc tggatcagcg caatgggtta ttaaactatt       180
     gccaccgttg taagtgacca agcgggctcc tatgatgcag gccggaatga tgagtacata       240
     taacaccggt accaccccga tgcatcgagc ttattactat tcgtttcgtt ctttctttct       300
     ttattcgttt gtcttccttt ccttcctgtt ccttctggcc aatgctggag gaatgctcct       360
     tttttccggt ctggattatc cgatcaggaa cggtgggtga aaggcctcaa ttagacagga       420
     aggagttgtg aatggactta tactcatcgg gctgggtatc tggtatcgtt ggatggaaac       480
     gtggtataaa actattaccc accgcgaaag acccggaccg cctatagcta cgagttgtgg       540
     gttattatta atttctttat gcatgtagtt gagtaaattt agtacatggg aaacatcata       600
     cacatacaca cacatagata taccctatta ttccctttgt cttaagcatg gtcctagcag       660
     attgtttttt ttgtttgata ctgtatcttt ttttttatta atttcttaaa ttttatttat       720
     ctatttaatt acgttattat tatattttat attttatatt atgcctgtat ttggcagttg       780
     cgagaattta gcagacgaag aattacaaga aagtgtttgc ttgatctgcc aggctcaggt       840
     ggaatatttg gctcagctcc ttaccacgtc ttgtggtcac actttccata gggcctgttt       900
     tggcgcacga gtgggttcta agaaggtttg tcctgtctgc aaaacgtctt ttcagtcatc       960
     gacgttgaat ttattagacg aaactgctgg ggataccgtc ggaaccttat tggtaccaaa      1020
     aatgcctgat acaaggagta aagcccatgt gggggctcca cagggagctt cgacgtctgc      1080
     ttcggccaat cagccgcaaa ctagggaagc tggtccggca gtggtggtag ctccgccgcc      1140
     tagtaacgag cttcagcgaa tgatagccga agccatggct gaagcctcgt tgacacaaac      1200
     cgagatgcta agcaatgcga tcgctaatgg ttttcaaggt attctcagct ctctcatggg      1260
     ccaattggaa aatacagcgg atgttcccta gagggatatc caagctggag aaggatcggc      1320
     acgacggccg acacctttgc ccgggtttca gggtttcgaa acagccagca ggaattcccc      1380
     catgaatgtg gatattcgac cagagcgtgt tagtcaaatt ttagtcaatt gaatgcttag      1440
     gttctcttgg cggactggaa tttccgtcga cgatttcatt tatcggatag aagcgctcac      1500
     gatccaaaca ttggacggga atttcgagtt gctttcgaga tacgtgagca atctctttga      1560
     gggaagtgcc agtgactggt attggcgcta ccataagagt gttaggacgg tcgtttgggc      1620
     cgacccaaaa tcttcattgt tagtacgatt caaggatgcg aggacagacg tcaacattcg      1680
     agctgcaata gaccgaagga agcagaagga gaacgaatca tttgatgagt tctacgaagc      1740
     gattgtccga ctggcagata ccctgacaac gcccttgtca gaaggttccc tgatggagtc      1800
     actccgatcc aatttattga cggagataca gcatgaactg ctatatgaaa agatctttag      1860
     cattgcacag ttaagacact tggtgaagac tcgggaactg ttcatgcaaa ctgttggtaa      1920
     agatccggta gatccggacc acgaccagca ccaagacggt tggttcacgc ggtagaaagc      1980
     ccagggcaag aggagtcaga cgaaagtgag ggggagatag cagcgttcaa cttagtctgt      2040
     tggaactgcc gtggtaatgg tcatcgctac caggtttgcg tagcagagcg agtagttttt      2100
     tgctatgggt gtggccagcc tgacacttac aagccatcgt gccaaaaatg cca             2153
//
ID   GYPSY24-I_AG repbase;    DNA;    INV; 4459 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY24-I_AG is an internal portion of retrotransposon GYPSY24_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY24-I_AG; GYPSY24-LTR_AG; GYPSY24_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4459
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY24_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 13-13 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY24_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG,
CC   GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY24-I_AG consensus was reconstructed after multiple
CC   alignment of 7 copies.
CC   The consensus encodes the 1412-aa GYPSY24_AGp gag-pol like
CC   protein
CC   (pos. 199-4434).
CC   The sequence of the LTRs flanking GYPSY24-I is deposited as
CC   GYPSY24-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..4434
FT                 /product="GYPSY24_AGp"
FT                 /translation="MANDNRELLEALSGMLVQALKASIGPAVEQVSAELRN
FT                 TGENIPAPLPKAPSFAMPEYRANEGTSVADYFNRFEWALQLSKIPEIQYAD
FT                 YARVHMGAELNTSLKFLVAPKKPQEVPYSEMRKILVAHWDQKKNKFVESIK
FT                 FRTIVQQRDESIAQYVLRLKQGSANCEYDNFLDRMLIEQMLHGLTERDICD
FT                 EIVAKNPSTFQDALDVALALEATRNIARDINTSQPASEATNKLGYEKPNVK
FT                 KPYTRRNTTNKQHANSPENTAFNNTHGNQPVACNGCGGPHLRSECRFRSAK
FT                 CNNCHKKGHIAKVCKSGKSNHHISQQDISSPSGSIDQVQRLNRIHNIPSSE
FT                 KKMIDVKIDGKSLKMELDTGAPCAIVSEATLKSIKPHFTLQTSDRQFSSYT
FT                 GHRISCIGRMNVNVTIGATTRKEQLYVVSGAHDSLLGREWISHFADQIDLN
FT                 RMFSSRTSIHTVSNSTLSPNCETQLTRLLDSYADVFSESPGKLTGPPAKVH
FT                 LKENATPVFARARDVPLALRERYAKEIDSKINSGFYEKVEYSEWASPTHVV
FT                 VKKNGKLRITGNYKPTVNPLMIIDEHPIPRIESIFNRMKGATLFCHLDVTD
FT                 AYTHLPIDEQFRHVLTLNTTTHGLIRPTRAVYGAANIPAIWQRRMEEVLLG
FT                 LTNVVSFYDDIIVFAKDFEELLQALTSILSRIKESGLKLNRSKCVFATPSL
FT                 ECLGHRIDREGLHKSTKHIEAIRDAPRPSSPEQLQLFLGKATYYSAFIPDL
FT                 STRAKVLREILSADRFEWTAEAEEAYRDIKNILISPQVLTQYDPTLPLILA
FT                 TDASKTGLGAVLSHRLSNGVERPIAYASCTMSATEQRYPVIDKEALAIVWA
FT                 VKKFFNYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMANYADYLAHFN
FT                 FDVVYRSTNENKNADYCSRIPSPSTQSSVNSLSLRRGGNEDQDDFEDFVLN
FT                 QIQQLPIKADQIARETRKDEHLGKILKDLEMGRNLSQIGYKAPEAKYTMVA
FT                 NCLLFEHRVVIPDIFRPAILQDLHAAHIGVVRMKSLARSYVYWPGIDKDIE
FT                 QLAKSCHECAQTVSAPPKFNQHHWEYPSNPWERVHVDYAGPVAGAMLLIIV
FT                 DAYSKWVEVKVTHSTTTEATIKILDELFASYGAPLTVVTDNGTQFTAAEFT
FT                 TFLQRSGVKFHKRSAPYHPATNGQAERYVQTVKRALKAMHSSSTTLQANLN
FT                 EFLLQYRKVPHSETGEAPAKLFLGRNIRSRLDLVRPQSVQTRTAEKQRVAF
FT                 EPSYRTFLPGQLVYCLSGSTRMDKWIRGTVVSRLGDLHYSINCNGNQMKRH
FT                 VDQMRPTLDDNRTEQPRSVPVPTQTPEVHHHRRHYYGSTDSPQTSSVPVSS
FT                 RTVSVSSDSSTSSDSSYDTPTGSPIRASDAPPFVRRSTRLRNPPLRYSP"
XX
SQ   Sequence 4459 BP; 1355 A; 1124 C; 963 G; 1017 T; 0 other;
     ttttggtgtc agaagtggga tagtccagga tacgtgtcgg atacatcgga gccagcggaa        60
     aagcgatttg tcgcccgcta aacaaacgat acatcacaca cacatcccaa gcagaaaagt       120
     gaggttagca tcaccacgtg cgaacaacat tacgacaagg aggtttcttt cgctgtacgc       180
     tgaatacaac agaaaacgat ggcaaatgat aaccgtgagt tgctggaggc cctttccgga       240
     atgcttgtgc aggcacttaa ggcatccatc ggaccagccg ttgaacaagt aagtgcagaa       300
     ctacgcaaca caggtgaaaa tatcccagcg ccgcttccga aagctccgtc atttgctatg       360
     cccgaatacc gtgccaacga gggaacatcg gtcgctgatt attttaaccg ctttgagtgg       420
     gcgcttcagc taagtaaaat cccggaaata cagtacgcgg attatgctcg tgtgcatatg       480
     ggagccgagc taaacacgtc gctaaaattt ttagtcgcac caaaaaaacc acaagaagtg       540
     ccatattcgg aaatgcggaa aattttagta gctcattggg accagaaaaa gaataaattc       600
     gtagaaagta ttaaatttcg aaccatcgtg caacaacgag acgaatcgat tgcacagtac       660
     gttctccggt taaagcaagg ttcagcaaat tgcgaatacg acaatttttt agaccgaatg       720
     ctcattgagc aaatgttaca tggattgaca gagcgcgaca tctgtgacga gatagttgca       780
     aagaatccat ccacatttca agacgctctc gatgtagccc tcgcgttaga agcaactcgc       840
     aatattgctc gagacattaa cacgtcgcaa ccagcttctg aagctactaa caagctaggc       900
     tacgaaaagc caaatgtaaa aaaaccatac acgcgtcgaa acacgacaaa caagcagcat       960
     gcaaactcgc cagagaacac cgcattcaac aatacacacg gtaaccagcc agtagcttgt      1020
     aatggctgtg gaggtccaca cctcagaagc gagtgtcgtt tccgtagcgc caaatgtaac      1080
     aattgccata agaaaggtca tattgctaag gtctgcaaat cgggtaagtc caaccatcac      1140
     atttcacaac aagatatctc ttcgccctcc ggtagtattg atcaagtgca acggcttaac      1200
     cgtattcata acataccgtc gagtgagaaa aaaatgatcg atgttaagat cgatggtaaa      1260
     tcgctgaaga tggagcttga taccggtgca ccttgcgcaa tcgtatcaga agcaaccctc      1320
     aaatcaatta aaccacattt caccttgcag acaagcgaca gacaattttc tagttatact      1380
     gggcatcgca tcagctgtat tggtaggatg aatgtcaatg taactattgg agccacaacg      1440
     cgaaaggagc aactctatgt agtgtccgga gcacacgatt cactcctggg acgcgaatgg      1500
     atctctcact ttgcagatca gatcgattta aatcgcatgt tctcctcgcg tacatccatc      1560
     catacagtgt caaatagcac attatctcca aattgcgaaa cgcagctaac aagattatta      1620
     gacagctatg ctgatgtttt cagtgagtct ccgggtaaac tgacaggtcc cccggcaaaa      1680
     gtacacttga aagaaaatgc aacaccagtg tttgctagag cacgcgacgt tcccctcgcg      1740
     ctgcgagaaa ggtatgccaa agaaatcgac agtaaaataa attccggttt ttacgaaaag      1800
     gtcgaatatt cggagtgggc atctcctaca cacgtggtcg ttaagaaaaa cggtaagctg      1860
     aggataacag gtaattacaa acctactgta aaccctttaa tgataataga cgaacatcct      1920
     attcctcgaa ttgagagtat tttcaaccga atgaaaggtg ctactctatt ttgccatttg      1980
     gatgttaccg acgcatatac gcatcttccc atagacgaac agtttcgtca tgtcttaacc      2040
     cttaacacca caactcatgg gctcatacga ccaaccagag cagtatacgg tgccgccaac      2100
     atacccgcaa tctggcaacg tcgaatggaa gaagttctct taggccttac aaatgtcgtt      2160
     agcttctatg acgacattat cgttttcgcg aaagattttg aagagctttt acaagcctta      2220
     acaagtatcc taagcagaat caaggaaagt ggtctgaaac ttaaccgatc taaatgtgtc      2280
     tttgccacac catcactcga gtgcttaggt caccgaattg atcgcgaagg tcttcacaag      2340
     tcgacgaaac acattgaagc gatccgagac gcaccaagac cgtcttctcc cgaacaatta      2400
     cagctatttt tgggtaaagc cacatactat tcagcgttca taccagattt gtcaacaaga      2460
     gcaaaggtat tgcgtgagat attatcagca gatcgttttg agtggacggc tgaagccgaa      2520
     gaagcctacc gcgatatcaa aaacatttta atttcaccac aagtccttac tcagtatgac      2580
     ccaacactac cattgatatt agctactgac gcaagcaaga cgggtctcgg agcagtgctc      2640
     tcccatcgac tcagtaacgg ggtagaaaga cccatagctt atgcaagctg tacaatgtcg      2700
     gcgacggaac aacgctatcc ggttatcgac aaagaagctc tcgctatcgt ttgggcagtc      2760
     aagaagtttt tcaactattt atatgcacgg aagttcacgc tcgtcacgga ccacaaaccg      2820
     ttgacgcaaa tcctgcatcc agagaagtca ctgcctacac tttgtataag tcgcatggca      2880
     aactacgctg actacttagc gcactttaat ttcgatgtag tgtaccgatc gactaacgaa      2940
     aataagaatg ccgattattg ttcacgcatt ccaagtccct cgacacaatc cagtgtcaac      3000
     agcctttctc ttcgtagagg aggaaatgag gatcaagacg attttgaaga ttttgtgctt      3060
     aaccaaatcc agcagctgcc cattaaagcc gatcaaatcg cacgcgaaac gcgaaaagat      3120
     gagcacttgg gtaaaatttt gaaagacctc gaaatgggac gaaacctatc acaaatcggc      3180
     tataaagcac cagaagccaa atacaccatg gttgccaatt gtttgctgtt tgaacaccgt      3240
     gtcgtgattc ccgacatctt tcgtcctgca attctgcaag atttgcacgc agcacatatt      3300
     ggtgtggtga gaatgaagtc tttggcccgt tcatatgtct actggccggg catagacaaa      3360
     gacatcgagc agctagccaa atcatgccac gaatgcgctc aaacggtctc agcacctcct      3420
     aagttcaatc aacaccattg ggagtatcca tctaaccctt gggagcgtgt gcatgttgac      3480
     tatgcgggac ccgttgctgg cgcgatgcta ctgatcatcg tggatgcgta cagcaagtgg      3540
     gttgaggtga aagtgactca ctcaaccact accgaggcaa ccataaaaat cctcgacgag      3600
     ctatttgcat cctatggagc ccccctaact gttgtaacag acaacggaac acaattcact      3660
     gcagcagagt tcaccacatt tcttcaacga agcggtgtca agttccacaa acgctccgct      3720
     ccatatcatc cggcaaccaa tgggcaagca gagagatacg ttcagacagt taagcgagct      3780
     ttgaaggcta tgcattcgtc cagcactaca cttcaagcta acctgaacga gttcctgctc      3840
     cagtaccgca aagtcccgca cagtgaaacc ggtgaagcac cagcaaagct tttcctaggg      3900
     cgaaacatcc gttcacgtct cgacctggtt cgaccacaat ccgtccagac aagaacagca      3960
     gagaagcaac gagtcgcttt tgaaccatcg taccgaacat tcttgcccgg acaactcgtc      4020
     tactgtctct cgggaagtac gagaatggat aagtggatcc gaggtacagt ggtatcccga      4080
     ctaggcgatc tacactactc catcaactgc aatggtaacc agatgaaacg ccacgtggat      4140
     cagatgcgac caaccctaga cgacaacagg acagaacagc cgcgaagtgt acctgtacca      4200
     actcaaactc cggaggtaca ccatcaccgc aggcactact acgggtcaac cgactctcca      4260
     caaacatcga gtgtccccgt ttcatctcgg acagtctccg tgtcatcaga ctcatctact      4320
     tcgtccgatt catcgtatga cacaccgaca ggaagcccga tccgagccag tgacgccccg      4380
     cccttcgtcc gccgttctac aagactgcga aacccgccgt tgcgatactc gccgtagttc      4440
     atttctaaga agggaggag                                                   4459
//
ID   Gypsy24-I_Dpse repbase;    DNA;    INV; 6428 BP.
XX
AC   Unknown_group_154;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy24_Dpse;
KW   Gypsy24-LTR_Dpse; Gypsy24-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6428
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1126-1126 (2009).
XX
DR   Genome; Unknown_group_154; Positions   21028   14601.
XX
CC   Positions [2884-3360] - Integrase core
CC   'GCCG' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..3732
FT                 /product="Gypsy24-I_Dpse_1p"
FT                 /translation="MRALSVRVRKARSRFKQRRAIRRQVIASVKRWCKEDP
FT                 RVFAEISIMGESVRGLLDSGATHSMLGCNGQEFLEKLGVEARRYSSIVKVA
FT                 NGEDRAIVGRVELPVKYKGEVKRLTFFVCPFLEQEIYLGVDFWRVFSLAPE
FT                 VMGEGPVGASHRLVEEVLADQVAHYVEGPEKEIVQEEWELSEEQKAALDQV
FT                 KAEFLTFEAVGLGRTSRETHKIQLVEKAEPVKDRHYPLSPAMQEVVCGEVD
FT                 KMLALGVIEYSDSPWSNRTTVVRRPGKNRFCLDARKLNKVTIKDAYPLPSI
FT                 EGILSRLDQTIYISSVDLKFAFWQIELDEQSRPYTAFTVPGRPLYQFRMMP
FT                 FGLCNAAQRLCRLVDKVIPVEMRSNVYAYLDDLLIIAEDFQTHVKILRQVA
FT                 ERLREANLTIGLSKSHFCYKNIKYLGFIVGGGALKMDPDRVSAILRIPEPR
FT                 SVRELRSFLGTAGWYRRFMKNYAEMAGPLTDALKKSGNGKFKLTEEAKRAM
FT                 GKLKAALTSAPVLVHADFKRHFYIQCDASHYGVGAVLFQRDDEQNERPIAF
FT                 FSAKLNCHQKNYSVTEKECLAALMAILKFRPYVELMPFTVITDHASLKWLM
FT                 TMKNLDGRLARWSLQLQAFDFGIEHRKGADNVVADTLSRSIEELEVDPSSI
FT                 LGFETVEFESVEYQELRKEITENQDRLPDLQIVDGMIFKRMRFERLDDQLE
FT                 GAVWKLWVPSSLTAALIDKAHSEEKTAHGGIAKTLHLLRRQFYWPNMAIEV
FT                 RDYIRRCTVCKESKVPNYRMQVGMGQEVVTERPFQKLYIDFLGKYPRSKNG
FT                 QAWIFIVVDHFSKFTFLKTMTKATAKEVVRFLVHEVFYKFGVPEMIHSDNG
FT                 AQFVSKTFKEMTDAFGVTHMRTPVYSPQSNAAERVNRTVLSAIRAYLEDDH
FT                 RDWDVHLPEIELAIRNSVHEATGVTPFFAVFGQQMYLHGSCYKLAKRLRSI
FT                 GEHDISLLEGQDKRQLIQERIRASLHQAYERSRVRYNQRARVFYARPGQEV
FT                 FRRNFVLSDFGKGFNAKFARKFIRCRVVKPVGENAYALEDLNGRPIGVYHA
FT                 KDLRM"
XX
SQ   Sequence 6428 BP; 1733 A; 1314 C; 1874 G; 1507 T; 0 other;
     cggcgtccga gttcgaccgc atgagagaac tgcgtctacg gcttacgggt ttattcctta        60
     gaccaactgc gggatgagtg cgtggaaata gaggcacatc tgaagaggaa ggctcgatct       120
     tcgtggcgag gagcacccaa agccacaaac tatggtcgcg gggcgaatgc gaacgtcagc       180
     gaggtcgcgc aggatcggtc gattagcgat gaagaggcag aggtcattga ggaagcgcaa       240
     gtgacacagc gtgttccaca gaagttgatt tgctggaact gcgggcagac cgatcatggc       300
     tttagggatt gtatggcatc ggagaggcga attttctgct accggtgtgg aaagtccgat       360
     gcatattgtc caacctgtcc gaattgcgcg ggaaacgtga agaggggtgc gatccaagca       420
     ggcgaatcac gctcacagaa ggggcctgcg cagagaaatt agaagaaaat aaaaatgaat       480
     tagatagacg taaattgcat gctaggttaa ggaaatagaa tattttctga actacgagtg       540
     gatggtatgc gagcactgtc ggtgcgggtg agaaaggcga gatcccgttt taagcaaagg       600
     cgagctataa ggaggcaggt gattgcttca gtaaagcgtt ggtgcaagga agacccgaga       660
     gttttcgcag aaatctctat aatgggcgag tccgtgcgag gcctgttaga ttcaggcgct       720
     acacacagca tgctagggtg taatggtcag gaattcctgg agaagctggg cgtggaggct       780
     cgtcgatatt cttctatagt gaaggtagcg aatggggaag atcgcgcaat cgttggccga       840
     gtggaattac cggtgaaata caagggagag gtaaaaagat taacgttttt cgtatgccct       900
     ttcttggaac aggaaattta cttgggggta gacttttggc gggtattctc attggctcct       960
     gaggtgatgg gagaaggtcc agtaggggca tctcacagat tagtggaaga agtgctggct      1020
     gatcaagtcg ctcactatgt ggaaggcccg gagaaggaga tagtgcagga agaatgggag      1080
     ttgtcagaag agcaaaaagc agccttggat caggtgaagg cagagtttct gactttcgaa      1140
     gccgtaggcc tggggaggac gtcgagagag actcacaaaa ttcaattggt ggagaaggcc      1200
     gagcctgtga aggatcgaca ttacccgctg tcgccagcga tgcaggaagt ggtgtgtggt      1260
     gaggtggaca aaatgttggc tttgggagtc atcgagtaca gtgatagtcc gtggagcaac      1320
     cgtaccaccg tggtgcgaag gccgggcaaa aatcgtttct gtctcgatgc ccgaaagctc      1380
     aacaaagtaa ccatcaagga cgcttaccca cttcctagca tcgaggggat tttgtcgcgt      1440
     ctcgatcaga cgatatatat ctccagcgtc gacttaaaat tcgccttctg gcaaatcgag      1500
     ctggacgagc agagtcgacc atatactgcg ttcacggtgc cgggacgccc tctgtatcag      1560
     ttccgtatga tgccctttgg cctctgcaac gccgcacaac gcctatgtag actggtcgat      1620
     aaggtaattc cggttgagat gcgttcaaac gtctatgcgt atctcgacga cttgctgatt      1680
     atagctgagg acttccaaac gcacgtgaag attctgcgac aggttgccga gcgtctacga      1740
     gaagcaaatt taacgatagg gctgagcaaa tctcattttt gctataaaaa cattaaatac      1800
     ctgggattta tagtgggagg aggagcgctg aagatggatc cggatcgtgt gtcggccatt      1860
     ttgcgcattc ccgagccgcg atctgttcga gaattgcgta gcttcctggg aactgcgggc      1920
     tggtaccggc gctttatgaa aaactatgct gagatggccg gtccgctcac agacgccctg      1980
     aaaaagtcgg gaaatgggaa gtttaaattg acggaggagg caaaacgagc catggggaag      2040
     ctaaaagctg cactcacctc ggcaccagtc ctggtacacg cggatttcaa gcggcacttc      2100
     tacatacagt gcgacgcctc acattatggg gtaggagccg tactcttcca acgggatgac      2160
     gagcagaacg agaggcccat agcgtttttc tctgccaaac tgaattgcca ccaaaaaaac      2220
     tactcagtga cagagaagga gtgtctggca gccctcatgg cgatccttaa gttccgtccg      2280
     tacgtagagc ttatgccgtt tacagtcata actgaccacg ccagtctcaa atggctcatg      2340
     accatgaaga acctggatgg tcgcttagct cgttggtccc ttcaactgca ggccttcgat      2400
     tttggcatag aacaccggaa aggagcggac aatgtagtgg cagatacatt gtcacgcagt      2460
     attgaagagc tggaagtgga tccgagtagt atcctgggtt ttgaaacggt ggagtttgaa      2520
     tctgtagaat atcaggagtt aaggaaggaa ataacagaga accaagaccg cttacctgat      2580
     ctccagattg ttgacggcat gatattcaag cgcatgcgct ttgaacgatt ggatgatcaa      2640
     ctggagggcg ccgtctggaa attgtgggtt ccgagttcgc tgacggccgc gttgatagac      2700
     aaagcacatt cggaagagaa gacagcgcac ggaggaatcg cgaaaacctt gcacttattg      2760
     cgtaggcagt tttactggcc gaacatggcg atagaggtac gggattatat ccgacggtgc      2820
     accgtgtgca aggagtcgaa agtgccgaat tatcggatgc aggtcgggat ggggcaagaa      2880
     gtggtcactg agcgcccgtt ccaaaaactt tatattgatt ttttgggtaa atatccgcgg      2940
     tcaaagaacg gtcaggcgtg gatatttatt gtagttgacc atttctcgaa gttcacgttc      3000
     ctaaagacta tgaccaaggc cacggcaaag gaagttgtaa gattcctcgt tcacgaggtg      3060
     ttttacaagt ttggagtgcc ggagatgatt cactcggaca atggggctca gttcgtctcg      3120
     aaaactttta aggagatgac cgatgcattc ggagtcactc atatgaggac gccagtgtat      3180
     tctccgcaga gtaacgcagc cgaacgcgtg aatcgcacag tactcagcgc gattcgagcg      3240
     tatctggaag acgatcaccg ggactgggat gtgcatctgc cggagataga actggctatt      3300
     aggaactcgg ttcacgaggc gacaggcgta acgccattct ttgcagtctt cgggcagcaa      3360
     atgtatttgc atgggtcatg ctacaagctg gcaaagcgac tgcggtcaat cggcgagcat      3420
     gacatatcgc tgctggaggg tcaggacaag cgacaactca tccaagagag gattcgcgct      3480
     agtttacatc aggcatacga gcgcagtagg gtaaggtaca accagcgagc tcgggtgttt      3540
     tacgcgaggc cgggacaaga ggtattccgc cgaaattttg tccttagtga cttcggaaaa      3600
     ggctttaatg ccaagttcgc gcgcaaattc atccgatgcc gggtagtgaa gccagtagga      3660
     gagaacgcgt atgctctgga ggaccttaac ggccgtccca taggagtgta ccacgccaaa      3720
     gacctgagaa tgtagtgagg tgtgggtgtg gcctacgttg ggcgcggcag aagaatacag      3780
     ggcacgccgg cgggtgctaa atagtgttcc ggaatccggt gggcatgccc acgcgtatgt      3840
     tgtccctcct gggactgacg acatactcgt ggtggtgttc cagtcccacc tgaacgatag      3900
     gtggccaggg ctgagggcga cgcgccatct agcggaagtc cagggaggct cgatggtcga      3960
     tggggacatc ggggggagct ggagccgtta ctggggatat aaggaagaga ataggattag      4020
     ttatatgtat tagtaaggga aaaagggata aataggagtg aaaagattag aaaacgtgga      4080
     ttgggttatg aaaatcgtgg agcgtggacg gagtcacgtc gggatccgaa attttgtgaa      4140
     ttaaacaaac agtttgaagt gagtaccgaa aaagcgggca agaaagtagg tagtaatgca      4200
     aaattttaca aacagtttga accggcaagg aatacagcca ctagaaccgg gccggaagat      4260
     ttcctggaga ggaacactgg agcccgagaa agtcgactgc agagaagaag acgatacaac      4320
     gggacctgag tgagttcgtt ccagttgcgc gtgggtgagc caagtagcgc gggacgtgtg      4380
     aagggagggg gtgaaagagg tcgagtgagc ggccagggcg attctagcca caccgcacga      4440
     tcgttgcatc gccgtccagt gcgtgccaca cgtttgggct ctgttaccaa gtgaaaacct      4500
     cgaaatccta ttcacacaca cacacacaca cacgcgcaca cgtatacacg aacctagata      4560
     aatttagggc tgaccggcca cggccagcga tcagcgagcc cacgttattg aatttaaaga      4620
     aaaacaaata atccgcactc caaacaccgt tccactgtaa atgttatttt gttccgtgtg      4680
     ttgtccttta ttctgtattt agtataagct caaaacgttt aaagtaaaat cttggccagt      4740
     gaaaaaaaat atgtatgtaa aaacaccaac acctttcaca aacgtaaatc tgcgatcagc      4800
     tggtcaacgc cagaagatta acccttagcg ggtgacgcgg gggtcccatc agtccaccgt      4860
     atttgggcga gtgaattgtg gaaaatattg gttattgttt atgtcccggg gacccttaac      4920
     aagagctctt ggtaggtcag gtctccgtag gggcccgagt tgaattaact cccgtaagac      4980
     ggatccagtc cccactcatc tacacatagt ccagtacgaa tgggtgaggg tatccctgta      5040
     ggttaaacga aatttcagca gttatttccg tgtttgtctt tgtgtcgaac gttttggtgt      5100
     ttctttttgg ttagggataa ttttgagtat agctatttat taataagaaa tatgaagttg      5160
     tcaatttata attattaaag cttggatata gactgaagta tgatgcgtta aatttaaaat      5220
     agagggagga cgcgtggcgt aagccatgga ttaggccggc cgttaccgtt ccagcagagg      5280
     gtggccaaaa tgaacgttgt gtttggtcac aggtagggcg ggcgcgcgaa gtggtaacac      5340
     ccaagcttca cccacttgat agccgtctgt ttatgatttt ctttgttgtt gttaggttgt      5400
     tgttagtttt gatgtcccga gaagtagtat gtctcctttt ttgtctacat ttggcgggca      5460
     aggggaacta cccagccctg gggtcgacag ctagccggca ttgccctctg ggaaacaagc      5520
     taaatgtaac aaacggcgcc caaactattt tcgaattcgc atgcatctgg actgacgcag      5580
     gttcgagtgg tattacaaca aatgtcactc gggctggtaa aggcagatgc gggggaatga      5640
     aaaaaaaaat ataaatcttg tggagaagac gacagctcgc gaagtgcagt ttagctgtcc      5700
     cggcagaagt cgctgctgca ggcttaaggt gagcgtaaag ctggtcctta atggcgcggg      5760
     gtgattgatg ctagggatgg atagacggag gcagttaacg gaaatataaa atatgtgata      5820
     gggacttacg aattacagtt gaacattttg tcgctattcg atgtcacaag tgaacgtaag      5880
     tcactgccgt tcaacaaaaa aatgaacagg gagtttgcga cggacacatt gcctggtgga      5940
     ctgtgatatc gaagaaatct gtgatggaat gtgatattgg aataagttag agtaagtcat      6000
     gtaggtaaat gttcattgta gtttcgcacc tgtttgttta aaacaaagcc gctttcgtgt      6060
     ttttggacct gttgtctgtc tgccgagagg tggtgaggag taggtggccc gggagtcgca      6120
     aagacaaccc gcgatgcatc tgttgtcatg gcagatcggc atgatggatg acaggaacaa      6180
     atcacaagca aagtgagctc atgcaccgtg aggcttctcg tttatcggcc atcgcgtaga      6240
     gcgatgacta gagtagatga caggccacac aaaggtggtg ttcgtaattg taggatatcc      6300
     gtagggcgac tgtcaagtgg agcgcagaaa ctggagcggt taccggtccc ggctagtcac      6360
     gtgtccccct cttaatgaat ctagtaagaa gaagaagaac tgttaggaat ttttgttgtt      6420
     aggttttg                                                               6428
//
ID   GYPSY24-LTR_AG repbase;    DNA;    INV; 192 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY24-LTR_AG is an LTR of retrotransposon GYPSY24_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY24-I_AG; GYPSY24-LTR_AG; GYPSY24_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-192
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY24_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 14-14 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY24-LTR_AG is a long terminal repeat of GYPSY24_AG (its
CC   internal
CC   portion is deposited as GYPSY24-I_AG).
XX
SQ   Sequence 192 BP; 53 A; 39 C; 27 G; 73 T; 0 other;
     tgttatatat gaaccctggt atttgacagt tgtgtcataa cgcctgacag gttgacccta        60
     cctttcgttt gttgttaaat gtcattcctt ctttacacct tattgaattc gtttggttac       120
     tttttgctac aactccttaa acaaacctca tgtgaacttt tctgcctaat aaagagaatt       180
     aaatacataa ca                                                           192
//
ID   Gypsy24-LTR_Dpse repbase;    DNA;    INV; 1263 BP.
XX
AC   Unknown_group_154;
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy24_Dpse;
KW   Gypsy24-I_Dpse; Gypsy24-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1263
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1127-1127 (2009).
XX
DR   Genome; Unknown_group_154; Positions   14600   13338.
XX
SQ   Sequence 1263 BP; 321 A; 255 C; 356 G; 331 T; 0 other;
     tgttgtgttg aatgtgtttg aagtttgagt gtcttaggtg tcgatccaat gtacatgtat        60
     gtgaatattt atttatttat ttatttattc aaatatttaa ttgcatattg atcgttaacg       120
     gagctagttg gcgcaatatt tatatccgtc tttatttatt tatttatcgg agtatttatt       180
     ggtccgaagc gtggtgttat ttattcttac tagttatttc tttgggtatt tatttcttta       240
     tttatatata ttatcttagt ttaggagtat cttttttttt tttgtaatat tggtgttgct       300
     cggtgcagat gccacaagaa gggggtagtc gacagtatcc tacgcgatca cgcgtaaaca       360
     aaacagtgga ccagatagga gaaaggtcag gggcgatgtt tgatcaagct cgggaggaac       420
     ttggagctgt gggtgggttg ccaagaacac cggtccaggc caggtcagaa gaatggccaa       480
     tgtccgatcc tacacccacg cttgcttccg aactggcatc agcagtcaac gtatcgttgg       540
     cccaggctca tgcgacacac agggcagcga acactgactc gattagtcgg gtgttgcagg       600
     aagagttgcg taaggggttt atcgagatga tgcaccaact caacgaggta ctccagccgg       660
     ttagacagct gcagcagcag aaggaaccgc agcgggagga ggttcaccac gagcaagagt       720
     atcgaggagc aatcccgaaa aggaagccgt ctagcacgac tgatgcgccg attccgccac       780
     caaaaccatt tttgtctcgc tcggggcgag gtggtgttgg tccggaaccg tcttcaggag       840
     taggacagac cgcatccagt gagcagcatc aacggggtgg gcatcaagcg cgaaattggc       900
     gaaacccaat agcacacaga cactcgggtc agggtcgtgg cgagggtagg agaggtggtg       960
     gaattcctcg agaagatccg catccaaatc ccccgggtaa tagaccttgg ccacggtggg      1020
     gccgagtcga aaaatgggac gtgacgttcg acggagacag caacaaaatg acagtcgaag      1080
     attttgtgtt ccgaattgaa ttcctacaag cccaatgccg ctgtccgtgg gatgaagttc      1140
     taaggggatt tcatcacctg gttacaggaa acgcgcgaga atggtactgg cagtacatcc      1200
     gtgatcatgg cggtggtgtt tggcaggaac taaggggcga cttaattgct cgtttccgag      1260
     gca                                                                    1263
//
ID   GYPSY25-I_AG repbase;    DNA;    INV; 4631 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY25-I_AG is an internal portion of retrotransposon GYPSY25_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY25-I_AG; GYPSY25-LTR_AG; GYPSY25_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4631
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY25_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 15-15 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY25_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG,
CC   GYPSY24_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY25-I_AG consensus was reconstructed after multiple
CC   alignment of 8 copies.
CC   The consensus encodes the 1470-aa GYPSY25_AGp gag-pol like
CC   protein
CC   (pos. 210-4619).
CC   The sequence of the LTRs flanking GYPSY25-I is deposited as
CC   GYPSY25-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..4619
FT                 /product="GYPSY25_AGp"
FT                 /translation="MLNPDEMMEEEEHRRLSQNWGGNAVFGNGQQQPSQSN
FT                 VALPAQPPLQNVVGAPSQQGASTSGQDAGMLSQMLQLLQQQMNQQQQLMAQ
FT                 MLKYQQQSVPQPSQPSLIPTNPELIIDALASNISEFRYEAESGATFKAWYE
FT                 RYEDLFLRDASRLDDGAKVRLLGRKLGTAEHARFTSFILPRAPRELTFDET
FT                 VAKLTALFGRTESLLSKRYKCMQITKAPREDLLTFSCRVNRACVDFEFAGM
FT                 NEEQFKCLILVCGLKEEVDSDMRNRLLARIEEKHDVTLEQLSAECQRITNI
FT                 KVDSALIANESGERVLAVNSGGYRQKQFQFNRQQYQSYGQPTQAHARANDN
FT                 TMSVQKPLNACWLCSGPHWKRECPYRSHECADCGRLGHREGHCEVVNRFQR
FT                 RGYNKKGTNVATRVVNINVCNVEARRKYVHILINGRPTKLQLDTASDITVI
FT                 SEGLWKDIGQPSLIRATVKAKAASQEYLELMGEFEALLTIASRTQKAVVRV
FT                 AYANLLLLGADVVESFSLGSIPMDHYCSSIDAESATQMTWEERFPTVFRGM
FT                 GLCTKSSIKLKVKEGSRPIFRPKRPVAYAMLKTVDEELDRLETLNVITPVD
FT                 YSEWAAPIVVVRKANGKIRICGDYSTGLNDLLQSHEYPLPLPEDIFAKLSK
FT                 CRIFSKIDLSDAFLQVQIDKEYRPLLTINTHRGLYHYNRLSPGIKIAPAAF
FT                 QQLIDTMLAGLSGVCGYMDDLIIGGLTDEDHDKTLGQVLKRIEEFGFTLRA
FT                 DKCVFRMCQIKYLGHVIDGRGIRPDPEKISAIQNLPPPTDIAGVRSFLGAI
FT                 NYYGKFIPMMRDLRFPLDSLLKDEKQFKWTKECEAAFMKFKEVLSSELLLT
FT                 HYDPSAEIIVAADASSVGIGATLSHKFSDGSIKVVQHASRALTKAESNYSQ
FT                 IDREGLALVYAVTKFHKMLYGRHFRLQTDHRPLLRIFGSKKGIPIYTASRL
FT                 QRFALTMQLYDFTIEYIQSGMFGNADILSRLIRNHAKPEAEYVIASLNLEE
FT                 DLRSVAINAISNSSPLCFRDVEKSTQADPLLRKVYLYIQEGWPRDATFGSE
FT                 LARFHVRREALSTVEGCILFGERLVIPEDLRAHCLEQLHRGHPGVERMKSL
FT                 ARSYVYWPRLDDEIVQYVAACEACAAAAKTPPQAKPTPWPKPSGPWQRLHV
FT                 DYAGPILGDYFLVVVDAFSKWPEIVKTSTTTSRATVAILRGLFARFGMPLS
FT                 IVSDNGPQFTSQEFKNFCECHGIRQVTTAPFHPQSNGQAERFVDTLKRALK
FT                 KIQTGGTSMDEALDTFLQAYRTTPNPALEWNTTPAEIIIKYPVRTHLELLR
FT                 RPPVVEEETEITAAGLQPGDVVATKKYYQNTWKWISAEVLRRLGTVMYELT
FT                 SRNGRMMRRHIDQIRKRSVKEPHQLVQDSETPTQLPIDILLGEWSLTVPNE
FT                 PLPLSSTTEELRTVPSPQPFSPAQVAPSESNHRKIRSPRRSSRNRKLPRRF
FT                 DAFIL"
XX
SQ   Sequence 4631 BP; 1317 A; 1037 C; 1164 G; 1113 T; 0 other;
     gtggcgacga gtttagttac attgttttat ttattgaact gtttttatcg aaccgaacgc        60
     agagttaatt tattttgttt cgttttaacg tattatttat tcaaagtgtg tcggccgtat       120
     acgcgtcaag tcgttatttt atttttttta ttaatcgttt gtgaatcgcg ccaaaagaaa       180
     tcggtacaat ttcgcgtaag cgtagaagga tgctaaaccc ggacgaaatg atggaggagg       240
     aagagcatcg ccgcttatcc caaaattggg gtggaaatgc agtttttggt aatgggcagc       300
     agcagccatc gcagagcaac gtagcgttac cagctcaacc accattgcaa aatgtagtcg       360
     gggcgccatc gcagcaaggt gcatcgacct cggggcaaga cgccgggatg ctatcgcaaa       420
     tgctgcaatt attgcaacag caaatgaacc agcaacagca gcttatggcg caaatgttga       480
     aataccaaca gcaatccgtc ccgcagcctt cgcaacctag tttgataccg actaatcctg       540
     agcttataat tgatgcgttg gcgagcaaca taagcgaatt tagatacgag gctgaatcag       600
     gagcaacgtt taaggcctgg tacgagcgtt acgaggactt atttttgagg gacgcttccc       660
     gactcgacga tggggcgaaa gtacggctcc ttgggcgtaa gttgggcacg gcagaacacg       720
     ctcgtttcac cagttttata ctacctcgcg cgcctcgtga actaacattt gacgaaacgg       780
     ttgcaaagct aacggccctt tttggtagaa cggaatcctt actcagcaaa cgttacaagt       840
     gcatgcagat aaccaaagca ccccgggaag atctgctcac gttttcttgc cgcgtaaacc       900
     gtgcctgtgt cgactttgag tttgccggaa tgaacgagga gcaattcaag tgccttatcc       960
     ttgtttgcgg actcaaagaa gaagtcgata gtgacatgcg caaccggtta ttagcccgta      1020
     tcgaggagaa acatgatgtg acgttggagc agttatcagc agaatgccag cgtatcacca      1080
     atataaaagt ggatagtgca ttaattgcca acgaatcagg agaacgggtc cttgcagtga      1140
     acagcggtgg ctatagacaa aaacaatttc aatttaatcg tcagcagtac cagtcctacg      1200
     gtcaaccaac acaggcgcat gcacgggcaa atgataacac catgtcagta caaaagccgt      1260
     tgaatgcgtg ttggttgtgc agtggcccgc attggaagcg tgagtgtcca tataggtccc      1320
     acgaatgtgc ggattgtgga aggcttgggc atcgcgaagg gcactgtgaa gtcgtcaatc      1380
     gattccagcg gcgtggatac aataaaaaag gtactaatgt ggcaacgcgc gtcgtgaaca      1440
     taaatgtgtg caatgtagaa gcaaggcgaa agtatgtaca tatcttgatc aacggaagac      1500
     caactaagtt gcagctagac acggcatcag atattacggt gatcagcgag ggattgtgga      1560
     aggatatcgg acagccatct ctgataaggg ctacggtaaa agctaaggcg gcctcgcagg      1620
     agtatcttga actaatgggt gagtttgaag cgttattaac cattgcttct aggacccaaa      1680
     aggcagtagt tcgagtcgca tatgctaacc tgttgttact aggagcagac gtcgtggagt      1740
     ccttttcact cggatctatc ccgatggacc attattgtag tagcatcgat gcggaaagtg      1800
     caactcagat gacatgggag gaacgttttc caacagtttt ccgagggatg ggtctttgca      1860
     ccaaatcaag cataaagttg aaagtgaagg aaggcagtcg acccatattt cgtcccaagc      1920
     ggccggtggc atacgcaatg ctgaagactg ttgatgagga gctagatcga ttagaaacct      1980
     tgaacgtgat cacgccagtt gattattctg agtgggctgc ccccatagtg gtagtgcgta      2040
     aagcgaacgg gaaaattagg atctgcggtg actattctac tggactgaac gatcttctac      2100
     aatcacatga gtatccactc cctttgcctg aggatatctt cgctaaattg tctaaatgcc      2160
     gcatattcag caaaattgac ctttctgatg cttttctaca ggtccaaatc gataaagagt      2220
     atcgcccgct gttgacgatc aacacccacc ggggattata ccactacaac cgtttgtctc      2280
     cgggaataaa aattgcccca gcagcatttc aacagttgat cgacacgatg ctggcaggac      2340
     tgtcaggagt ttgtggttat atggacgacc ttataatcgg tggcttgaca gatgaagacc      2400
     acgataagac tttgggtcaa gtactgaagc gtatagaaga attcggattt acactacggg      2460
     ctgataaatg cgtttttaga atgtgtcaga taaaatactt agggcatgta attgatggta      2520
     gaggaatacg ccctgatccg gaaaagataa gcgccataca aaacttaccg ccacccactg      2580
     acatcgcagg agttcgttct tttcttggag ctataaatta ctatgggaag ttcataccga      2640
     tgatgcggga tctaagattt ccactcgaca gccttttaaa agatgagaag caattcaaat      2700
     ggacaaagga gtgtgaagcg gcatttatga aatttaagga agtactatca tcagaacttt      2760
     tactaacaca ttacgatcca tccgcagaaa taatagtggc agcagacgcc tcatccgttg      2820
     gaatcggagc cactcttagc cacaagttct ccgacggtag catcaaagtt gtgcaacacg      2880
     cttcaagggc gctgacaaag gcggaatcca actatagcca aatagaccgc gaaggtctgg      2940
     cccttgttta tgcggttaca aaatttcaca agatgttgta cggccgtcat tttcgactcc      3000
     aaactgatca tcgtccttta ctccggattt ttggatcgaa gaagggcatt ccgatataca      3060
     cggctagcag actacagcga tttgccctca ccatgcagtt atatgatttc acaatagaat      3120
     atatacaatc cggaatgttt ggaaatgcag atatcctttc gcgactcata aggaaccacg      3180
     caaagcccga agccgaatat gtgattgcca gcctaaacct agaggaggat ttaaggtcag      3240
     tagctatcaa cgcgatttct aattcctctc ctctttgttt tagagatgtg gagaaaagta      3300
     cgcaagcgga cccattgctg cggaaagtct atctatatat tcaggaaggc tggccacggg      3360
     atgctacttt tggttcagag ttggcacgtt ttcacgtcag gagagaagcg ctatcgaccg      3420
     tcgaagggtg catcctcttt ggcgaaagat tagtgatacc ggaagatctg cgtgcgcatt      3480
     gtctagaaca gctccatcga ggccacccag gcgttgaacg tatgaaatct ctcgcacgaa      3540
     gctacgtgta ctggccaaga ttagacgacg aaatagtgca gtacgtggct gcttgtgagg      3600
     catgtgctgc agcagcaaag acaccgcctc aagcaaaacc gacaccgtgg ccgaaacctt      3660
     ctggtccatg gcaaaggtta cacgtggact atgcggggcc aattttaggc gactactttc      3720
     ttgtggttgt ggatgccttc tcaaagtggc cagagattgt gaaaacctcc acaacaactt      3780
     cacgggccac ggtagcgata ttacgtggat tattcgcacg ctttggcatg cccctgagta      3840
     ttgtcagtga caacgggcca caatttacga gtcaggaatt caaaaacttt tgcgagtgcc      3900
     atgggatccg acaagtaaca acggcgccat ttcacccgca atccaacgga caggcggagc      3960
     gtttcgtcga cacattgaag cgggctctaa agaaaataca aacgggaggc acatctatgg      4020
     atgaagcgtt ggacacattc ttgcaggcgt atcgcaccac gccaaatcca gcgcttgagt      4080
     ggaatacaac accggcggaa atcatcatta agtaccccgt aaggactcac ttggagctat      4140
     tacgtcggcc tcctgttgtc gaagaggaaa cagaaatcac cgctgcaggg ctccagccag      4200
     gagatgttgt tgcaaccaag aagtactacc aaaatacatg gaaatggatc tccgctgagg      4260
     tgctacgaag gctgggaacg gtgatgtatg agttaaccag ccgaaacggt cgaatgatgc      4320
     ggagacatat agatcagatc aggaaacgat cagttaaaga acctcatcag ttggtgcagg      4380
     atagtgagac gcccacacaa ctgcccatcg acattctgtt gggtgaatgg agtttaacgg      4440
     taccgaacga gcctttgccg ctaagcagta caacggagga attgcgcacg gtcccttcac      4500
     cccagccatt ctccccggca caggttgcac cttcggaaag caatcatcgt aagatacgct      4560
     cacctcgccg ttcgtctagg aatagaaagc ttccgcgaag gttcgatgcg ttcatacttt      4620
     aaagggggag a                                                           4631
//
ID   GYPSY25-LTR_AG repbase;    DNA;    INV; 234 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY25-LTR_AG is an LTR of retrotransposon GYPSY25_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY25-I_AG; GYPSY25-LTR_AG; GYPSY25_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-234
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY25_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 16-16 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY25-LTR_AG is a long terminal repeat of GYPSY25_AG (its
CC   internal
CC   portion is deposited as GYPSY25-I_AG).
XX
SQ   Sequence 234 BP; 72 A; 45 C; 69 G; 48 T; 0 other;
     tgttatggcc caacctgcct aacggctaag ggcactcacc gaagacaggc aatggtcttc        60
     gggtgatgtg tgagtgtagc aggtcgggcc agagagagag ccgagcggca aagtgcatta       120
     ttatactgta ggctatcgca cgggcaacaa gaggagatag ataaaggcat attccatata       180
     ttcagaaaga cgaaagtgta ctgtattcga tagaagggtg gcgatatcac aaca             234
//
ID   GYPSY26-I_AG repbase;    DNA;    INV; 3921 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY26-I_AG is an internal portion of retrotransposon GYPSY26_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY26-I_AG; GYPSY26-LTR_AG; GYPSY26_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3921
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY26_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 17-17 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY26_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG,
CC   GYPSY24_AG, GYPSY25_AG, GYPSY27_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY26-I_AG consensus was reconstructed after multiple
CC   alignment of 6 copies.
CC   The consensus encodes the 1278-aa GYPSY26_AGp gag-pol like
CC   protein
CC   (pos. 36-3869).
CC   The sequence of the LTRs flanking GYPSY26-I is deposited as
CC   GYPSY26-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..3869
FT                 /product="GYPSY26_AGp"
FT                 /translation="MANDEEPRPTTSAANAANATNNNNTAEAPRTITHANF
FT                 AFDAFDKAKCKWSRWVERIETAFEIYAIKDVRVKRNLLLHHMGGEAYDVLC
FT                 DKIAPKRPRECEYKEVIATLEEYFHPEPLEISENFRFKCRRQGDKDAHSAE
FT                 ESVDEYLVALRKIATTCNFGQYLSTALRNQLVFGLKRNDIRNRLLEKRNLT
FT                 LEEARDIAVGMELSKKSSAEIENGGPSQDVHAVQKRNEKHNHKEAKANKSL
FT                 PKNVTCYRCGDAKHVANKCKHINTICNFCRKKGHLAKVCMKKQSQNEVCTV
FT                 ISLNNIVPKWWIDLTVDNITMRFEVDTGSPLTIIGKQCYEKYFKNKPLQKC
FT                 NVELVSYTNNAIEVLGTIKVKVDNEMLPLYVVNLMKRPLLGREWLNAVPDW
FT                 NNRLQVNEVNEMAINTNSLNTILQKYADVFDPNLGKISGVQAHLTLKENAQ
FT                 PIFLKARRVPFNLIDAVDQELDKLVAEDVLEEVPTSKWATPIVPVRKAEGK
FT                 VRICGDYKQTVNQKLQVDQHPLPTVEELFASLAGGKRFSKIDLVQAYLQME
FT                 VAPEDREMLTLNTHRGLFRPKRLMYGIASAPAIWQRQMEGILHGISGVSVF
FT                 LDDIKITGPNDQIHLQRLEEVLKRLNDRNIRLNKEKCLFFAKQIDYCGYTI
FT                 DEHGIHKMRDKIEAIANMRRPSNKDEVRSFVGLVNYYGRFMRDLSTILYPL
FT                 NNLLKNDTPFKWNKEQEKSFQKVKEHIQSNECLVHYSPELPLLLATDASPY
FT                 GVGAVLSHVYPDGTERPIQFASQTLNKVQQKYMHVDKEAYAIMFAVKKFFQ
FT                 YLYGRQFTLVTDNQAIAKILGEHKGIPVMSALRMQHYATYLQAFDYKIRFR
FT                 KAADNANADTLSRLPLSCQDTTTFFEETDGIEINQIETLPLTVKELSQATA
FT                 EDLTVKTLIQGITHGKQVPNENRFGIEQQEFTVQQGCLLRGVRVYVPAKLR
FT                 ARVLEELHSTHFGVTRTKSLARGYCWWPGIDIAIETMIKNCAECQSTRPEP
FT                 SKVPLHCWEKPTAPFERVHVDFAGPFMDTYFFIMVDAYSKWPEIRICKSTT
FT                 AEKTVQMCREIFSSHGLPSVLVSDHGRQFTSDVFQRFLKMNGIVHKMGAPY
FT                 HPATNGQAERYVQTFKQKLKALKCSKSELHLSLCNILITYRKMIHPSTGKT
FT                 PSQLIYGRQIRSRIDLMLPSNEVHHGGNLHTKQFSDGDRVRVRDYLSSDKW
FT                 KFGRVMEKLGKLRYSVRLDDGRVWERHTNQMMGVGEDLPDSNNNLTDAQPT
FT                 SSQDAVNLRRSSRLQGR"
XX
SQ   Sequence 3921 BP; 1343 A; 766 C; 876 G; 936 T; 0 other;
     aagtggcgac gagggacgga gtaaaaaccc gcagtatggc gaacgacgag gaacctcgac        60
     cgactacaag tgctgcaaat gctgcaaatg ctacaaataa caacaatact gctgaggccc       120
     cccgcaccat cactcatgca aatttcgcat tcgacgcctt tgataaggca aaatgcaaat       180
     ggagtcgatg ggtggaaaga atcgaaacag cgtttgagat atacgctata aaggatgtaa       240
     gggtcaagcg aaatcttctt cttcaccaca tgggaggtga agcatacgat gtgctgtgcg       300
     acaaaatagc tccgaaacga ccacgggaat gcgagtacaa agaggtgatt gctacgctgg       360
     aagaatattt ccatccagaa ccattggaaa ttagcgaaaa tttcaggttc aagtgccgac       420
     gtcaaggtga caaagatgcc cattcagcag aagaaagtgt ggacgaatat ttagtggcat       480
     tgcgaaaaat tgccacaaca tgcaatttcg ggcagtattt gtcaaccgca ttgcgaaacc       540
     aattagtatt tggtttgaag agaaacgata tccgtaatcg tttgcttgaa aagcggaacc       600
     ttacgttaga ggaagcgaga gacatagctg ttggcatgga gctatcaaaa aaaagcagtg       660
     ctgaaataga aaatggtggt ccatcacaag atgtacatgc agttcagaaa cgtaatgaaa       720
     aacataacca caaagaagca aaagcaaaca aaagtttgcc aaagaacgta acctgttatc       780
     gatgcggtga tgcaaaacat gtggcaaaca aatgcaagca tatcaatacg atttgcaact       840
     tctgtcggaa gaaagggcat ttagcaaaag tttgcatgaa aaagcaaagc caaaatgaag       900
     tgtgcacggt aatttcgtta aacaacatcg ttccgaaatg gtggatagat cttaccgtag       960
     ataacattac aatgcgtttc gaagtggata caggatcacc gctaaccatt attggaaaac      1020
     aatgctacga gaaatatttc aaaaacaaac ctcttcaaaa atgcaatgtc gaactcgtga      1080
     gctatacaaa caatgcaatc gaagtgcttg gcacaataaa agtaaaagtg gataatgaaa      1140
     tgcttccgct ctatgtggtg aatctcatga aacgaccatt acttggtaga gaatggttaa      1200
     atgcggtgcc cgattggaat aatcggttgc aggtaaacga agtaaatgaa atggcaataa      1260
     atacaaacag ccttaatact attttgcaga agtacgccga cgttttcgat ccaaatttag      1320
     gcaaaatatc gggagtacaa gcacacctga ccctcaaaga aaacgcacag ccaatcttct      1380
     tgaaagcacg acgtgtgccg ttcaatttga tcgatgctgt agatcaagag cttgacaagc      1440
     ttgttgcaga ggacgtgcta gaagaagtac caaccagcaa atgggcaacg ccgattgtac      1500
     cggtgcggaa ggcagaaggt aaagtacgaa tttgcggaga ttacaagcaa actgttaatc      1560
     aaaagttgca ggtagatcaa cacccattac caactgtaga agagttgttt gcgtccctag      1620
     ctggtggtaa acggttttca aaaatcgatt tagtacaagc ttatctgcaa atggaggtag      1680
     cacccgaaga tcgtgagatg ctgactctta atactcatcg aggactgttt cgtccaaagc      1740
     gtttgatgta tggtattgca tcagccccgg cgatttggca acggcaaatg gaaggaatcc      1800
     tgcatggaat ttcaggggta agcgtttttc tcgatgatat taaaatcact ggtcctaatg      1860
     atcaaattca tttgcaaagg ctagaagaag tcttaaaacg actaaatgat agaaacatac      1920
     gccttaacaa agaaaaatgc ctgttttttg ctaaacaaat agattattgt ggttacacca      1980
     tagatgaaca tggtatacac aaaatgcgtg acaagatcga agcaattgct aatatgcgta      2040
     ggccaagtaa caaagacgaa gtacgttcgt ttgtgggtct ggtcaattac tatggaaggt      2100
     ttatgcgaga tctgagcaca attctctatc ctttaaataa cttgctaaag aatgacactc      2160
     catttaaatg gaacaaagaa caagagaaat catttcaaaa agtgaaagag catatccaat      2220
     ctaatgaatg cttagtgcac tattcaccag aactaccact tttgttggca acagatgctt      2280
     ctccatacgg agttggtgca gtattgagcc atgtatatcc cgacggcaca gaacgaccta      2340
     ttcagttcgc gtcacaaact ctgaataagg tacaacaaaa gtatatgcat gtagataaag      2400
     aggcatacgc tatcatgttt gcggtgaaga aatttttcca atatttatac ggacgtcaat      2460
     ttacactggt taccgataat caagcgattg ctaaaattct aggagagcac aaaggtattc      2520
     cagtaatgtc agctttacga atgcaacact acgcaactta cttacaagca tttgattaca      2580
     aaatacgatt cagaaaagcc gccgataatg ctaatgcaga taccctttca cgactgccat      2640
     taagttgcca agataccact acattctttg aagaaactga tggcattgaa attaaccaga      2700
     ttgaaacact tccacttaca gtaaaagaac taagccaagc aacagccgaa gatctaacag      2760
     taaaaacact catacaaggt atcacacatg ggaagcaagt accaaatgaa aacagattcg      2820
     gaattgaaca acaagagttt acggtacaac aaggttgctt gcttcgggga gtaagagttt      2880
     acgttcctgc taaattgaga gcgcgagtac tagaggaact gcattcgaca cattttggcg      2940
     taacaagaac aaaatctcta gcaagaggct attgctggtg gcccggtatc gacatcgcta      3000
     ttgagacaat gataaagaac tgcgctgagt gccaatctac aagaccggaa ccatcaaaag      3060
     ttcccttaca ctgttgggag aaaccaacgg ctccgttcga aagagttcat gtagactttg      3120
     cgggaccttt catggatacc tatttcttta tcatggtcga cgcctacagt aaatggccgg      3180
     aaatacgaat ttgcaaatcg actacagcag aaaaaacggt acaaatgtgt cgcgagatat      3240
     ttagtagtca tggattacca tcggtattgg tcagcgatca cggaagacag ttcacttccg      3300
     atgtgtttca gcgatttttg aagatgaacg gaattgtcca taagatggga gcaccatacc      3360
     atccagctac taacgggcaa gcggaacgtt atgtgcaaac gttcaagcaa aagctgaagg      3420
     ctttgaaatg ttcaaagtct gagttgcatc ttagtctatg caacatacta atcacttacc      3480
     gcaaaatgat tcatccttcc acaggtaaaa caccatcaca actgatttac ggtcgtcaaa      3540
     taaggtcacg tattgatctt atgctacctt cgaatgaagt acatcatgga ggaaatttgc      3600
     atacgaagca attttcggat ggcgaccgtg taagagtgcg agactaccta tcgtcggaca      3660
     aatggaaatt tggacgagtg atggaaaagt taggaaaact gcggtattcg gtacgtctcg      3720
     acgatggcag agtatgggaa cggcacacta atcaaatgat gggtgtgggg gaggacctac      3780
     cagattcgaa caacaatctg acagatgcac aacctacaag tagtcaggat gcagtgaacc      3840
     tgagacgttc gagcagattg caaggaagat gatttcaatg caatcatccg gatccttgtt      3900
     ttcagtcgtc aaggggagag a                                                3921
//
ID   GYPSY26-LTR_AG repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY26-LTR_AG is an LTR of retrotransposon GYPSY26_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY26-I_AG; GYPSY26-LTR_AG; GYPSY26_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-195
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY26_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 18-18 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY26-LTR_AG is a long terminal repeat of GYPSY26_AG (its
CC   internal
CC   portion is deposited as GYPSY26-I_AG).
XX
SQ   Sequence 195 BP; 63 A; 43 C; 48 G; 41 T; 0 other;
     tgttatatac acctcgtaca caccgtgcgt atccaaccac gatgtgtaaa ccgctgtgac        60
     agttgacgcg cggcggcaga tatggaagtg agggaagaag aaaatacaaa gaggaatttg       120
     gcggcacgct ctctcgcgta cgaacaacca aacagagtgg tcgtgtttca ttcaatatat       180
     ccgaaagata taaca                                                        195
//
ID   GYPSY27-I_AG repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY27-I_AG is an internal portion of retrotransposon GYPSY27_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY27-I_AG; GYPSY27-LTR_AG; GYPSY27_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4117
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY27_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 19-19 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY27_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG,
CC   GYPSY24_AG, GYPSY25_AG, GYPSY26_AG and GYPSY28_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY27-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 1361-aa GYPSY27_AGp gag-pol like
CC   protein
CC   (pos. 22-4104).
CC   The sequence of the LTRs flanking GYPSY27-I is deposited as
CC   GYPSY27-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..4104
FT                 /product="GYPSY27_AGp"
FT                 /translation="MSKPPAKESSEQWIIEMFNQQKLLNSVLSVMKTKNDD
FT                 GSEKAIDAIAGQIKEFHHTEDTNFEAWYSRYEGLFLDDAKRLDDGAKLRLL
FT                 LRKIGVTEHERYISSIMPKQPKDFDFKNTVEKLKKLFGDRESIVCKRFKCL
FT                 QLVKEPHEEYGAYACRVNKKVVEAKLAGIAEEEIKCLLFVCGLKRDADADV
FT                 RVRLLSKMEDNSEITLDQLTGEAQRLLNLRQDSNLISNTAHEVNAVRKNET
FT                 KQQNIKGGGKEAKAVSCWLCGGQHFARECSFTSHKCEDCNEIGHKEGFCET
FT                 AYRNRSRYRNNKAKVRVVTVNKIQAGRKYVTAALNGRELKLQLDTGADITI
FT                 ISQGKWRQIGGPKLSPASVSARTASGTPLKLLGEFCCKMTINKQQKEALVR
FT                 VVEEELLLFGADSMDVFGLWKQPLDAFCNIVGCVKDAAAAVIQQFPSLFSN
FT                 ELGRCDKMKISLQLKDDVKPVFRPKRPVAYAMQSMVEDELTRLERNGIITP
FT                 TDSSEWAAPIVVVRKANGTVRICGDYSTGLNDALQPHQYPLPIPQDIFTAI
FT                 GKSAVFSQIDLAEAFLQVEVCERSRELLTINTHKGLYRFNRLPPGVKTAPG
FT                 AFQQIVDSMLSGLEGVAGYMDDIIVGGADEESHLKNLRAVLIRIEEFGFKL
FT                 RAEKCSFLKPQIRYLGHLLDRQGIRPDPAKIEAILKMPAPTQLSEVRSYLG
FT                 AINYYGKFVFQMRDLRYPLDLLLKKGGEFQWTAECEKSFRRFKEILSSDLL
FT                 LTHYDPSKEIIVSADASSVGLGATISHRFPDGSIKVVQHAARALTKVEMNY
FT                 SQPDREGLAIVFAVTKFHRMLFGRRFILQTDHQPLLRIFGSRKGIPLYTAN
FT                 RLQRWALALLLYDFAIEYVATDNFGNADILSRLMDRHEKPEEDYVIASIQL
FT                 EDDINHLVTSATQALPLNFKDLERGTQADPLLRKVFQFVQNGWPKGEEKTE
FT                 DLKQFFARREALSTVGKCLLFGERVVVPANLRNRVLKLLHKGHPGVCRMKA
FT                 LARGYVYWPKLDSEIENAVKTCQSCASAAKSPEHCTPVDWPKTTGPWQRIH
FT                 VDYAGPMEGEYYFLVVDSYSKWPEIIPTRQTTAQATVQMLRGLCARFGIPE
FT                 TVVSDNGTQFTSSEFRDFCMENGIHHVRTAPYHPQSNGQAERFVDTFKRAV
FT                 KKIREGRGEMHEALDEFLFTYRNTPNRILDQKSPGEMMLNRKVRTSLEMLR
FT                 PSFRDIRPADPVVADEATRRSFSINDRVYAKRYHRNGWEWVSGVVDKRVGN
FT                 VMYMVKIDGKTLRYHVNQLRMRNAETNEGRTQQPMPLNVLLDAWDMSGTTV
FT                 SASSSETSAATTTNLAEREMTPADGTEASLRRSTRVRKQPAWLEGYHRS"
XX
SQ   Sequence 4117 BP; 1196 A; 844 C; 1101 G; 976 T; 0 other;
     actggcgacg agaataccac gatgtcgaaa ccacctgcaa aagaaagctc agaacaatgg        60
     ataattgaaa tgttcaacca gcaaaagctc ttgaacagtg tattgtcggt gatgaaaaca       120
     aaaaatgatg atggatcgga gaaagcgatc gatgccattg cggggcaaat aaaagaattt       180
     caccacacgg aggatacaaa cttcgaggct tggtatagca gatacgaagg tttgtttctt       240
     gacgatgcga agcggttgga tgacggagca aaattgcgtc ttcttcttcg taagattggc       300
     gttacggagc acgaacgcta tataagttcc atcatgccga aacaaccgaa agacttcgat       360
     ttcaaaaaca ccgtggagaa actgaagaaa ctgtttggag accgtgagtc catcgtgtgc       420
     aaacggttta aatgcttgca gctagtgaaa gagcctcacg aagagtacgg agcgtatgcg       480
     tgccgcgtaa ataaaaaggt tgttgaggcg aagttggcgg ggatagcaga ggaggaaata       540
     aaatgtctgt tgtttgtctg tggtctaaaa cgggatgcgg atgctgatgt acgagttcgg       600
     ctgctctcaa agatggagga caacagtgaa atcacgttag atcagctaac cggtgaagct       660
     caacgcctgc ttaacctgcg ccaagatagc aaccttatct caaacactgc gcatgaggta       720
     aacgcagtga gaaagaatga gacgaaacaa caaaacatca aaggaggtgg caaggaagcg       780
     aaagcagtaa gttgctggtt gtgcggaggg caacactttg cacgagaatg ttcttttacg       840
     tcacacaaat gcgaggactg caacgagata ggtcacaagg aaggattttg tgaaacggcg       900
     taccgtaatc gttctcgcta tcgcaataac aaagcgaagg taagggtggt gacagtgaac       960
     aaaatccagg ctggccgaaa gtatgtcact gctgcgctaa acggacgcga gctgaaactg      1020
     cagttggata ccggtgcaga tatcaccatt atatcgcagg gaaaatggcg tcagatagga      1080
     ggtcccaaat tgagtccagc atccgtttca gcgaggacag ctagtggaac accgcttaag      1140
     ctactaggtg agttttgttg caaaatgacg attaacaaac aacagaaaga agcgttagtt      1200
     cgtgttgtag aagaggaact gttacttttc ggagcagaca gtatggatgt tttcgggctt      1260
     tggaaacagc cacttgatgc cttttgcaac atcgttgggt gtgttaaaga tgccgcagca      1320
     gctgtgattc agcaatttcc atcgttgttc tcgaacgaac ttggtcgttg tgataagatg      1380
     aaaattagtc tacagttgaa ggatgacgtg aaacctgtat ttcgcccgaa acgtccagta      1440
     gcgtatgcta tgcagtcgat ggttgaagat gaattgacca ggttagagcg taatggcata      1500
     ataacaccca ctgattcttc ggagtgggca gctccgattg tggtagtacg gaaggcgaac      1560
     ggaacagtcc gaatatgtgg cgactattcg acaggtctga atgacgcgct tcagccgcat      1620
     cagtacccgt tgcctatacc acaagacata tttacagcca ttggaaaatc agctgttttt      1680
     agtcagattg acttagcaga agcttttctc caagtggagg tatgtgaaag gagccgtgag      1740
     ttgttgacga taaacactca caaggggctt taccgtttca atagattgcc accgggagta      1800
     aagacagcac ctggtgcatt tcagcaaatc gttgactcaa tgttgagcgg attagaaggt      1860
     gtcgcgggtt atatggatga catcattgta ggcggtgctg atgaggaaag tcatttgaaa      1920
     aacttacgcg cagttttgat tcgtatcgag gagtttggtt tcaagctacg ggcagaaaaa      1980
     tgttcctttt tgaagcccca aatccgatac cttggacatt tgctagaccg gcagggtata      2040
     cgaccagacc cagcaaagat tgaagcgatt ttgaagatgc cagcgccaac gcagctcagc      2100
     gaagttcgtt cgtatttggg agcgataaat tactacggta aatttgtgtt tcaaatgaga      2160
     gatttgcgtt accccttaga ccttcttttg aaaaagggcg gagaattcca gtggacagct      2220
     gaatgcgaaa aaagttttcg ccgctttaag gagattttaa gttcagacct tctcctgacc      2280
     cattatgatc cttccaagga aattattgtg tcagcggatg cttcatcagt aggtcttgga      2340
     gctacgatca gtcatcggtt tccagatggt agcataaagg ttgttcagca tgctgctcgt      2400
     gctctaacga aggtggaaat gaactacagc cagccggatc gcgagggtct tgcaatcgtg      2460
     tttgcagtaa caaagttcca ccgcatgttg ttcggacgcc gcttcatcct ccaaaccgac      2520
     caccagccgc tccttagaat ctttggctca cgtaaaggaa ttcccttgta tactgcaaat      2580
     agactgcagc gctgggcatt agcactactt ctttacgatt tcgcaatcga atatgttgcg      2640
     acagacaatt tcggaaatgc cgacatactg tccaggttaa tggaccgaca cgagaaaccg      2700
     gaggaggact acgtcattgc tagtatccag ctagaggatg atattaatca tctagtaacc      2760
     agtgctactc aagccctacc gttgaacttt aaagatttgg agcgtggtac acaagcagat      2820
     cctttgttaa ggaaggtgtt ccagttcgtc caaaatggtt ggccaaaggg tgaagagaag      2880
     actgaagacc taaagcaatt cttcgcacga cgagaggcct tatctacggt tggaaaatgc      2940
     ctcttattcg gagaacgggt agtagttccc gcgaatcttc ggaatcgagt gttaaaactg      3000
     ctacacaagg gtcatcctgg agtatgccgc atgaaggcgc ttgcaagagg gtatgtgtat      3060
     tggccgaaat tggacagcga aatcgagaat gcagtgaaga cgtgtcagtc gtgtgcaagt      3120
     gcggcgaaat ctccagagca ttgcacacca gtagattggc caaaaactac aggcccctgg      3180
     cagcgtattc acgttgacta cgctggacct atggagggag agtattattt tctggttgta      3240
     gattcctact cgaaatggcc ggaaataata ccaacgcgtc aaaccacagc acaagcgaca      3300
     gttcaaatgt tacggggatt gtgtgcacgg tttggtatac cagaaactgt cgtaagcgat      3360
     aatggaacac agtttacaag ttcggagttc cgtgactttt gtatggagaa tggtattcat      3420
     cacgtgcgga ctgcgccata ccacccgcag tcaaacggcc aagccgaaag gtttgttgac      3480
     acgtttaaga gagcggtcaa gaagattcgg gagggtagag gtgagatgca cgaggctttg      3540
     gatgaatttc ttttcaccta caggaacacg ccgaatagaa tcttggatca aaaatcgccg      3600
     ggggagatga tgttaaatcg caaggttcga acgtctctgg agatgttgcg tccatcattt      3660
     cgcgatattc gaccagcgga tccagtggtg gccgacgaag ctactaggag gagtttctcc      3720
     ataaacgacc gtgtctacgc aaagcgatac catcgaaacg gctgggaatg ggtatctgga      3780
     gtagtcgaca agcgcgtggg taacgtaatg tacatggtca aaatcgatgg caagaccttg      3840
     cgctatcatg tgaaccagct tcggatgcgt aatgcagaga ccaacgaagg gcgaactcag      3900
     caaccaatgc cactgaatgt gttattagat gcctgggata tgtctggaac aacggtgtca      3960
     gcatcctcat ctgaaacatc ggcagcgact acaacaaatc ttgcggaacg tgagatgaca      4020
     cctgcggatg gtacagaagc aagcctacgc cgctcgacga gagtgaggaa gcagcctgcg      4080
     tggttggagg ggtatcatcg cagttaaagc gggggaa                               4117
//
ID   GYPSY27-LTR_AG repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY27-LTR_AG is an LTR of retrotransposon GYPSY27_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY27-I_AG; GYPSY27-LTR_AG; GYPSY27_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-205
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY27_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 20-20 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY27-LTR_AG is a long terminal repeat of GYPSY27_AG (its
CC   internal
CC   portion is deposited as GYPSY27-I_AG).
XX
SQ   Sequence 205 BP; 54 A; 44 C; 50 G; 57 T; 0 other;
     tgttggagac gctaacccgt cggcataaac gcgttgcgtt gtttgacgtt tgctgcttgg        60
     gtcggaaccg aagccaggaa agtgcgcgct ctttgtatgc gatctccacg gtgtacggac       120
     gtgtgtgtga accagaataa tttgtaaccc tttagaacta tctgaattac cgaaatacaa       180
     gaacttttac ttcgtaaata caaca                                             205
//
ID   GYPSY28-I_AG repbase;    DNA;    INV; 4216 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY28-I_AG is an internal portion of retrotransposon GYPSY28_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   AP protease; GYPSY28-I_AG; GYPSY28-LTR_AG; GYPSY28_AG;
KW   Gypsy clade; RNase-H; gag; integrase; mag lineage;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4216
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY28_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 21-21 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY28_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its reverse
CC   transcriptase, is
CC   phylogenetically grouped with representatives of the mag
CC   lineage of other organisms.
CC   GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG,
CC   GYPSY24_AG, GYPSY25_AG, GYPSY26_AG and GYPSY27_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY28-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 1387-aa GYPSY28_AGp gag-pol like
CC   protein
CC   (pos. 16-4176).
CC   The sequence of the LTRs flanking GYPSY28-I is deposited as
CC   GYPSY28-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..4176
FT                 /product="GYPSY28_AGp"
FT                 /translation="MVDQASNAGNVPSTSSSIIPNAAAAAGTVPPPNFAME
FT                 PFDKRKSKWMRWVDRLETAFDIYRVTEERDKKNYLLHYMGTETYDVICDKV
FT                 APAAPRDCTFQQIVDTLKDYFSPQPLEIAENYKFNSRRQGDKDAVTADESV
FT                 DEYLVALRRLAASCNFGDYLEKALRNQLVFGIKRGDIRDRLLEKRTLTLQE
FT                 ARDIAVSMELSRKGRTEIEGCSAKQEMHAVYQSKGKGWKPNKGVDKPSTST
FT                 EKSNCYRCGDKSHLANACKYKNIICSFCKTKGHLAKVCFKKKKNEAHSTGS
FT                 AAAQTNYVEQQGNDATIESTNIRDVCTVGSSTHCKKLWLNMKVNKKTIKFE
FT                 IDTGSPVTIISEEDQKRLFPDAQLRACTTNLVSYCNTPIDVCGILDVDVQL
FT                 ARHTLKLPLYVAKTTKHPLVGREWLSEIPLDWNKVVADSKSVNKIESDSMC
FT                 SVADCNALLERYPRVFEASIGRISNVQANLRLKENARPVFIKARKLPFNMI
FT                 KVVENELDKLVQEGVLVKVDSSDWATPIVPIKKSQNRVRICGDYKQTVNPN
FT                 LVVDRHPLPSVDELFASLAGGKKFSKIDLVQAYLQLEVAPADREILTLSTH
FT                 RGLYRPNRLMYGIASAPAIWQRQIESILQGIEGVSVFLDDIKITGETDEIH
FT                 LFRLEEVLRRLNEREIRVNKEKCEFFVDQIEYCGYVIDAKGIHKIQKKVDA
FT                 IQEMPKPRNKDEVRSFVGLVNYYGRFLQNLSTILYPLNNLLKTDVPFQWNK
FT                 QCEDSFKKVKEQMQSDNCLVHYSTELPLLLATDASPYGVGAVLSHIYPDGS
FT                 ERPIQFASQTLNRVQQKYMQVDKEAYAIVFGVRKFFQYLYGRTFTLLTDNQ
FT                 AISKIFGEHKGLPVMSALRMQHYATYLQSFDYKIRFRKSTDHANADAMSRI
FT                 PLHITDPDNEIEESDSIELSQIETLPLTAVELEQAVAKDQQVQKLIQGIKH
FT                 GRVVEAKDRFGVDQQEFAIQKGCLLRGIRVYVPEILRRKVLDELHSAHFGI
FT                 TRTKSLARGYCWWPGMDQDIERMVANCTECQLIRAEPAKMKLHCWETPSAP
FT                 FQRVHVDFAGPYKDLYFFIFVDAYSKWPMVKVCKSITAEQTVNMCRELFST
FT                 FGIPSVLVSDHGVQFTSTLFQQFLKMNGVVHKMGAPYHPATNGQAERYVQT
FT                 IKNKLKALKCSTSKINLELCNILLTYRKTVHPATGKSPSMLVFGRQIRSRL
FT                 DLLIPTQESSRKAEIPVRSFQIGARVRVRDFLSHDKWKFGKISARVGKLRY
FT                 EVKLDDGRVWERHIDHIAEVGADLRGTSAVNQESDLREQGDTTYFEEVLPS
FT                 TSNANTAVTTSDSEITVENTPGSSDRDADRPVERNNDPGMERDLTPAPVRP
FT                 INLEEESVLRRSTRARKPPQRLNL"
XX
SQ   Sequence 4216 BP; 1331 A; 850 C; 1015 G; 1020 T; 0 other;
     gttttggcga cgaggatggt tgatcaagca agtaacgcgg gcaacgtgcc atctacgagt        60
     tcttcaatta taccgaacgc agctgccgct gctggtacag ttccacctcc gaattttgct       120
     atggaaccat ttgacaaacg caaatcaaaa tggatgcggt gggtggatcg actggaaact       180
     gccttcgaca tctacagagt gaccgaagag cgggataaga agaactactt gctacattac       240
     atgggaaccg aaacttacga cgtcatttgc gacaaggttg ccccggctgc acctcgtgat       300
     tgtaccttcc agcaaattgt ggatacgctg aaagattatt tcagcccgca acccttagaa       360
     attgcagaaa actacaagtt taacagtcgc cgccagggtg acaaggatgc agttacagcc       420
     gatgagtcgg tagatgaata tttggtagcg ctacgcaggt tggccgcatc ttgtaacttc       480
     ggtgattact tagagaaggc gttgcgtaac cagctggttt tcgggataaa aagaggagac       540
     attcgcgatc gacttctaga aaagcgaacg ttgacgttgc aggaggctcg ggacattgca       600
     gtcagcatgg aattgtcccg gaaaggtaga accgagatcg aaggttgctc agcgaaacaa       660
     gaaatgcatg cggtgtacca gtctaaaggt aaaggttgga agccaaataa gggtgtggac       720
     aaacccagca cgagtacgga gaaatctaat tgctaccgtt gcggagacaa atcacatttg       780
     gcaaatgcat gtaagtacaa aaacataatt tgttcgtttt gtaaaacaaa gggacatttg       840
     gcgaaagtgt gttttaaaaa gaagaaaaat gaagcacatt cgacaggcag cgcggcggct       900
     caaacaaatt acgtggaaca gcaaggcaat gacgcaacaa tagaaagcac aaacatacga       960
     gatgtgtgta cagttggttc atctacacat tgcaagaaac tgtggttaaa tatgaaggtg      1020
     aacaaaaaga caattaaatt cgaaatagat acaggttcac cagttacgat cattagtgaa      1080
     gaagatcaaa aaaggctttt tcctgacgca cagctacgtg cgtgcacaac caaccttgta      1140
     agctattgta acactccgat cgacgtatgt ggcatacttg acgtagatgt acagttagca      1200
     agacatacat taaagctgcc gctgtatgta gcgaaaacta cgaaacatcc cttggtaggc      1260
     cgtgaatggt tgtcagaaat accactagac tggaacaagg ttgtggcgga ttcgaaatcg      1320
     gttaacaaga ttgaatcgga ttctatgtgc agtgtcgcag attgcaacgc attgcttgag      1380
     cgatatccaa gagtttttga agcttcaatc ggtcgcatct ccaatgtgca ggctaacttg      1440
     cgactaaagg aaaatgcacg accagttttc atcaaggcac ggaaactgcc atttaacatg      1500
     ataaaagtgg tagaaaatga attggacaag ttggttcagg aaggtgtact ggtaaaggta      1560
     gattcaagtg attgggcaac accaatcgta ccgataaaga aatcacagaa tcgggtgaga      1620
     atttgtggcg attataaaca gaccgttaat ccgaatctgg ttgtagacag acacccccta      1680
     ccgtcagtag atgaactttt tgcatcactt gcaggaggaa agaaatttag taagattgat      1740
     ctggtacaag catatttaca gctggaagtg gcaccggcag atcgggaaat actgacatta      1800
     tctacacatc gtggtctgta tcgacctaat agattgatgt atggcattgc atcagctccg      1860
     gcaatctggc aaagacaaat cgaatcaatt ttacaaggta ttgaaggagt cagtgtcttt      1920
     ctagatgaca tcaaaatcac aggggaaacc gatgaaatac acctttttag actcgaagaa      1980
     gtgctacgtc gactcaatga acgggaaata cgcgtcaaca aagaaaagtg tgaattcttc      2040
     gttgatcaaa tagagtactg tggctacgta attgatgcga agggcataca taaaattcag      2100
     aaaaaagtcg acgccataca agaaatgccg aaaccacgaa acaaggacga ggtacgctcg      2160
     tttgtcgggt tagtaaatta ttatggtaga ttcttgcaga atctgagtac catactttat      2220
     ccattgaaca atctactcaa aaccgacgtg ccatttcaat ggaataaaca atgtgaagat      2280
     tccttcaaga aggtaaagga acaaatgcag tcagataatt gcttagtaca ctactctacg      2340
     gagctaccgt tgctactggc cactgatgct tctccctacg gggtcggagc agtactgagt      2400
     cacatttacc ccgatggttc cgagcgtccc atacagtttg cttcacaaac attaaatcga      2460
     gtacagcaga aatacatgca agttgacaag gaggcctatg ccatcgtctt tggtgttagg      2520
     aaatttttcc aataccttta cgggcgcaca ttcactttac ttacggacaa ccaagctata      2580
     tcgaaaatat ttggagagca caaagggttg ccggtgatgt ctgcattacg gatgcaacat      2640
     tacgctacgt acttgcagag tttcgattac aagatccgat ttaggaagtc taccgaccat      2700
     gcaaacgccg atgccatgtc acgcattccg ttacatatta ctgatccgga taacgagatt      2760
     gaagaatcgg attcgattga gctaagtcaa attgaaacgt taccgttgac agctgttgaa      2820
     ttagagcaag cggttgctaa agatcaacag gttcaaaaac tgattcaagg aatcaaacat      2880
     ggccgggtag tagaagcgaa agatcgtttt ggagttgatc agcaagaatt tgccattcaa      2940
     aaaggatgtt tgctacgggg tatccgagtc tatgtgccag aaatcttacg cagaaaagtg      3000
     ttggacgaat tacattcagc acattttgga attactcgaa ctaaatcgct tgcaagaggt      3060
     tactgttggt ggccgggaat ggaccaggat atagaacgaa tggtagcaaa ctgtactgaa      3120
     tgccaattga ttcgagcgga accagctaaa atgaagttac attgttggga gacaccaagt      3180
     gctccatttc aacgagtaca cgttgatttc gccggtccat ataaggactt atattttttc      3240
     atcttcgtcg atgcttacag caaatggccg atggtaaagg tttgcaaatc aataacggca      3300
     gaacaaaccg taaacatgtg tcgcgagttg tttagcacat tcggaattcc atcagtactg      3360
     gtaagcgacc atggcgtaca atttacttct acgctgttcc aacaatttct taaaatgaat      3420
     ggcgtggtgc ataagatggg tgcaccttat caccctgcta cgaatggcca ggcggagcga      3480
     tatgtgcaaa caattaagaa caagctgaaa gcattaaaat gctccacatc gaagatcaat      3540
     ctggaattgt gcaacatttt acttacctac cgaaaaacag tacacccagc gacgggaaaa      3600
     tcaccatcca tgcttgtttt cgggaggcaa attcgatctc ggttagacct attgattcct      3660
     acgcaagagt catcaaggaa ggcagagata ccagtacgta gtttccagat cggagcaaga      3720
     gtgcgagtac gagatttcct gtcccacgat aaatggaaat ttggaaaaat ttctgcgcga      3780
     gttggaaagc tgcgatacga agtgaaacta gatgacggtc gtgtctggga acgtcacatc      3840
     gatcacattg cggaggtggg tgctgatcta cgaggtactt cggcggtcaa ccaggagagc      3900
     gatttacggg aacaaggcga tacaacgtac tttgaagagg tacttccttc cacttcgaat      3960
     gcgaatacgg cggttactac cagcgacagt gagataaccg tggaaaatac accagggtct      4020
     tctgatcgag atgccgatag acctgtagaa cggaataacg atccgggcat ggaacgggat      4080
     ctgacaccag cgcctgtccg accgatcaac ttggaagagg agtcggtcct acgccgttct      4140
     actcgtgcta gaaaacctcc ccaaagattg aatttgtaaa tggaacgatt tttttttcaa      4200
     ttacgaaggg gagaag                                                      4216
//
ID   GYPSY28-LTR_AG repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   GYPSY28-LTR_AG is an LTR of retrotransposon GYPSY28_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY28-I_AG; GYPSY28-LTR_AG; GYPSY28_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-219
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY28_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(1), 22-22 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY28-LTR_AG is a long terminal repeat of GYPSY28_AG (its
CC   internal
CC   portion is deposited as GYPSY28-I_AG).
XX
SQ   Sequence 219 BP; 81 A; 34 C; 59 G; 45 T; 0 other;
     tgttgtgtac aacggggatg ggaatgtgac acttcacggc caaggtatat gtttacctta        60
     cagtgtggga accttgggaa gaaaaggggg ttccggaaga agaactgtca gagggagaac       120
     aaaaagggaa gcctacgagc taggaagcaa ttacgaggca gaataaataa tacagtgaac       180
     tacgataaat aactgttcct taattacaaa gatacaaca                              219
//
ID   GYPSY29-I_AG repbase;    DNA;    INV; 4631 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY29-I_AG is an internal portion of retrotransposon GYPSY29_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY29-I_AG; GYPSY29-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY29_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4631
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY29_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 50-50 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY29_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase, is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG, GYPSY34_AG,
CC   GYPSY35_AG,
CC   GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY29-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 1521-aa GYPSY29_AGp gag-pol like
CC   polyprotein
CC   (pos. 28-4590).
CC   The sequence of the LTRs flanking GYPSY29-I_AG is deposited as
CC   GYPSY29-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4590
FT                 /product="GYPSY29_AGp"
FT                 /translation="MSVDDQRVTKDEMLCALQSAEITVPCTATLMQIRALY
FT                 KEAYPSSQQNGDSNDTMCNAAIAESKEESVTQIMKTDVIKENDEAAAEIVL
FT                 LKQKCEILELRNKLAALESQSREYSNTARLLHPEEVKQIIPMFGEGASFLQ
FT                 WIKTVKHSAEVYGWTDQMTLMYASSQLTGAAKEWYSGFRHSVTSFKEFAEG
FT                 MGKAFPDTHNEAAIHKKLLHTFKRNDESYAAYIFRVHALGTTGNVSNAAII
FT                 TYIIRGLSRDPMYDNLVAKEYRDVYDLIDHVNRCEMHYQMREPPSSPTRPQ
FT                 PSSRFTSMLKTNTKPANGREEMVRCYNCSSFGHFSNQCRKPRQSAQLCFLC
FT                 GSPDHKKQDCPNVAQRMPAAIFAPCDQQSFQHQCPASRLPQSGGNDYSHLN
FT                 LSMAAAAENNYGDDNGNQVTGSGARIDPIQEVSVALLNDNELSATQSRVFC
FT                 LFDSGSPKSFISEQLVPNIKHTPQFSGFCGLGNQQLTSLGHVNIRIKFRNI
FT                 NVSHSFMILPKQQTAWPLIAGRDLLKKMNIHLHYLCYRYSQDNLMNLLKEN
FT                 KSTLATHVKARLNSLGIFKTNSKDEADIWTQSIFQSDQKRYDSVDEHNQTN
FT                 DSGTEAESILRTFSELCAIDISKEANTLDIGNELSEDQMCLIASCVENNYL
FT                 QPLNETILESQHSMKISVTNDTPIFCKPRRLSFAERNQVRDIVKNLLEKQI
FT                 IRPSNSPYASAIVLVRKKNGEVRMCVDYRPLNKITIRDNYPIPLIDTCLEH
FT                 LSGKRYFTLLDLKSGFHQIKMHEDSISYTAFVTPDGQYEYLKMPFGLKNAP
FT                 SGFQRFINSVLREFIDEAKLVVYLDDIIIASKTFQDHLETLGAVLKTLRKN
FT                 GLELRIDKCKFGCSNLDYLGYYVNSKGIQPSNYHIKAIQNYPVPKTSKEVQ
FT                 RCLGLFSYFRRFVPSFSNIAKPLSNLLKEKVSFQFDEACMNAFNELKTKLI
FT                 NAPVLAIYDPSRETELHCDASTVGFGSVLLQKQDDGKFHPVAYFSKTASSS
FT                 ESNLHSYELETLSVIYALKRFHAYVHGIPIKIVTDCNSLVETLKNRNCSAK
FT                 IARWSLFLENYEYTMQYRPGTAMGHADALSRSKMAGAVDELDLDIQLQIAQ
FT                 GRDPTLVHLRTELETKPIPGYTLLDGVIYRQSPESKLQLIVPKELIKNVIR
FT                 STHESIGHLGVDKCCSQIAKHYWFSGMKNQVQNFIQNCLKCILFSAPPRKN
FT                 KRNLYNIPKSSVPFDTLHIDHFGPLPSIKSKKKYILVVIDSFTKFTKLYPT
FT                 TTTNTREVCSVLGQYFNYYSRPKRIVSDRATCFSSQEFKTFLSDRNIIHVQ
FT                 NAVCSPQANGQVERVNRVIKPMLSKITDSVDHADWCSKLSEVEYALNNTTH
FT                 SSTYFAPSVLLFGVEQRGTIINEFKEYLDNKNEPSRNLETIRSEASENIKR
FT                 SQEINLIQFGKRHNPAVEFAEGDLVVIRNVDNSANSNKKFIAKFKGPYIVH
FT                 KQLPNDRYVIRDIDGFQHTQIPYDGILESDKLRHWIAPDADLAPELCDATL
FT                 HDENV"
XX
SQ   Sequence 4631 BP; 1483 A; 958 C; 936 G; 1254 T; 0 other;
     tctcagaagt gggatagtga gcccaaaatg tccgtagatg accagagagt gactaaggat        60
     gagatgctgt gcgcactcca gtcggccgaa ataaccgtgc catgtacggc aacactgatg       120
     cagatccgtg ctctctataa ggaagcgtac cctagctcgc aacaaaatgg cgattccaac       180
     gacaccatgt gcaacgcagc cattgccgaa agtaaagaag agagcgtcac ccagatcatg       240
     aaaactgatg tgatcaaaga aaacgacgaa gctgcagcag aaattgtgct cctaaagcaa       300
     aaatgtgaga tacttgaact gcggaacaaa ttagcagcgc ttgagagcca aagtcgtgaa       360
     tactccaata cagctagatt gcttcatccg gaagaggtta agcagattat tccgatgttt       420
     ggagagggtg ccagtttctt gcagtggata aaaacggtaa aacacagtgc tgaagtttat       480
     ggttggaccg accaaatgac attgatgtac gctagcagtc agctaactgg cgctgcaaag       540
     gagtggtaca gtggtttccg gcattctgta acatcgttta aagaatttgc cgaaggaatg       600
     ggaaaagctt tcccagacac gcataatgaa gctgctattc acaagaagct gttgcataca       660
     ttcaaaagga atgatgagtc ctacgccgcc tacatctttc gtgtacatgc ccttggaaca       720
     actgggaacg tgagtaacgc agcgattata acatacatca tccgaggact atcgcgcgat       780
     cccatgtatg acaacttagt ggcgaaagaa tatcgtgatg tgtatgatct gattgatcat       840
     gtaaaccgat gcgagatgca ttaccaaatg cgtgaaccac cgtcatcccc cactcgtcca       900
     caaccttcaa gccgttttac atcgatgctg aaaaccaaca ccaaaccagc caatgggcga       960
     gaagaaatgg tgcgatgcta caattgttcg agtttcggcc atttttccaa ccagtgccga      1020
     aaaccacgtc agtctgccca actatgtttc ttgtgtggaa gccctgatca caagaaacaa      1080
     gactgcccga acgttgccca gaggatgcct gccgctatat ttgcaccgtg cgatcagcag      1140
     agtttccaac atcagtgtcc ggcatcacga ttgcctcaat ccggtggcaa tgattactca      1200
     catctgaacc tgtcgatggc tgctgcagca gaaaacaatt acggagatga taatggaaat      1260
     caagtgactg gttcaggagc taggatcgat ccaattcagg aggtaagtgt cgcattgctg      1320
     aatgataatg aattaagcgc aacgcaatca cgtgtgtttt gtttgtttga ttctggcagc      1380
     cctaaaagtt tcatcagtga acaacttgtg ccaaacatca aacatactcc tcaattttcg      1440
     ggattctgtg gattaggcaa ccagcagctt acatctttgg gccatgtgaa cattagaata      1500
     aaatttcgaa atatcaacgt ttcccattcc tttatgatac tgccaaaaca acaaacagca      1560
     tggcccttga ttgcaggaag ggacttatta aaaaagatga acatccattt acattacctt      1620
     tgttatcgtt attctcaaga caatctgatg aacttactaa aagaaaataa atctactctt      1680
     gcaacacacg tgaaagcgcg ccttaattca ttggggattt ttaaaactaa ttcgaaggat      1740
     gaggcagaca tttggacgca atctattttc caatcagacc agaaaagata cgatagtgtt      1800
     gatgaacata atcagaccaa cgatagtggt acggaggctg agagtatttt gaggactttt      1860
     tcagagttat gtgctattga tattagtaag gaagcgaaca cattggatat aggaaacgaa      1920
     ttgagtgaag accagatgtg tctgatagct tcatgtgtgg aaaataacta tcttcagccc      1980
     ttaaatgaaa ctattcttga atcacaacat tcaatgaaaa taagtgttac aaatgatact      2040
     ccaatattct gtaaacctag gcggttgtct tttgccgaac gcaatcaggt tcgtgatata      2100
     gttaaaaatt tattagaaaa acaaattatt cgacccagca attcacctta cgcatctgct      2160
     attgtgttag tacggaagaa aaatggtgag gtacgaatgt gtgttgacta ccgtccgtta      2220
     aataagataa caattcgtga taactatcca atacctttga ttgacacttg cctcgaacac      2280
     ctaagcggta aacggtattt cactctctta gatctcaaaa gcggctttca tcaaattaag      2340
     atgcacgaag attctattag ttacactgcc tttgtaacac ctgacggaca gtatgaatat      2400
     ctgaaaatgc catttgggct aaaaaacgct ccatcaggat ttcaaagatt cattaactca      2460
     gtactgcgag aattcatcga cgaagccaaa ctagtcgtct atcttgacga cataatcata      2520
     gcgtcaaaga cgtttcaaga tcatttagaa actctaggtg ctgttttaaa aactcttagg      2580
     aagaatggat tggaactgcg tattgacaaa tgcaaatttg ggtgcagtaa cttggattac      2640
     cttggttact atgtaaactc aaagggaatt caaccaagca actaccacat taaggctatc      2700
     caaaattacc cagtgcctaa aacctcaaag gaagttcagc gttgtcttgg tttgttttcc      2760
     tattttagac gattcgtccc gtctttctcg aacattgcaa aacctttgag caatctactt      2820
     aaagaaaaag tgtctttcca atttgatgaa gcatgtatga acgcatttaa tgaattgaaa      2880
     accaaattaa ttaatgctcc tgtgttggca atttatgatc cttctcgaga aacagaacta      2940
     cattgcgatg ccagcacagt tggatttggc tcggttttac ttcaaaagca agatgatggg      3000
     aaattccatc cagtggcata tttttcgaaa actgcttctt ctagtgagtc caatcttcac      3060
     agctacgagt tagaaacttt gtcagtgatt tacgccttga agcgttttca tgcatatgtg      3120
     catggtatcc ctataaagat agtaaccgat tgtaattccc tagtggaaac tttgaagaac      3180
     aggaactgct ccgccaaaat tgcaaggtgg tccctgttct tagaaaacta tgaatacact      3240
     atgcagtatc gccctggaac agcaatgggt cacgctgatg cacttagtcg ctccaaaatg      3300
     gcaggtgctg ttgacgagtt ggatctcgac attcagttgc agatagctca gggccgagat      3360
     cctacattag ttcatctaag aaccgaacta gaaacaaaac caattccagg gtacacacta      3420
     ctggatggtg tgatatatcg tcaatcccct gaaagcaaat tgcaattgat cgttccaaaa      3480
     gaactgataa aaaatgtgat tagaagcact catgaaagca taggccattt aggtgttgac      3540
     aagtgctgtt cacaaatcgc caaacactat tggttttcag gtatgaaaaa tcaggtacaa      3600
     aatttcattc agaattgcct taaatgtata cttttctctg cccccccaag aaaaaacaag      3660
     cgcaatttgt acaacatccc caaaagttca gtacctttcg atacccttca catcgaccat      3720
     tttggcccat taccatccat aaaatctaaa aagaaataca ttttagtggt gatcgattct      3780
     tttactaaat tcacaaaact ttaccccacc actacgacca acacaaggga ggtttgttct      3840
     gtgttgggac aatattttaa ctattatagc cgtcccaaac gaatagtgag tgatcgtgca      3900
     acttgttttt catctcagga gtttaaaacg tttctcagtg atcgtaacat aatacatgtt      3960
     caaaatgccg tttgttcccc tcaagccaac ggtcaggttg agagagttaa cagagtaatc      4020
     aaacccatgt taagcaaaat tactgattcc gtggatcatg cagattggtg ttccaaatta      4080
     tctgaagtcg aatatgcgct gaacaacaca acacactcgt caacgtattt tgctccttcg      4140
     gttttgttat tcggtgtcga acaacgtggt accattataa acgaattcaa agagtatcta      4200
     gataacaaaa acgaaccttc tagaaattta gaaactattc gttctgaagc ttctgaaaat      4260
     ataaaaagat cacaggaaat caacctgatt cagtttggca aaagacacaa cccagcggta      4320
     gaatttgcgg aaggggatct tgttgttatt cgaaacgtcg ataattcagc aaattctaac      4380
     aagaaattta ttgccaagtt caaaggtcct tacatagttc acaaacaact tccgaacgac      4440
     cgttatgtaa ttcgagatat cgatggtttc caacatactc aaatcccata tgatggtata      4500
     cttgagtctg ataagcttag acattggatt gcgccagatg ctgatcttgc cccagaatta      4560
     tgtgatgcga cactacatga tgagaatgtt taacgaattg aggacaattt atttgtcagg      4620
     ataggccgag t                                                           4631
//
ID   GYPSY29-LTR_AG repbase;    DNA;    INV; 161 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY29-LTR_AG is an LTR of retrotransposon GYPSY29_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY29_AG; GYPSY29-I_AG; GYPSY29-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-161
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY29_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 51-51 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY29-LTR is a long terminal repeat of GYPSY29_AG (its internal
CC   portion is deposited as GYPSY29-I_AG).
XX
SQ   Sequence 161 BP; 58 A; 24 C; 32 G; 47 T; 0 other;
     tgtaaaagtt tggaaaatgt atatacgtgt aaacgctact tgatgtcacg gtacgtgtat        60
     attagcatta ggttattttt gacagctgcc attagaacag aataaaaagc gaacgaatca       120
     ggacgccaaa tcgaagtgac tacaatttaa tcgattttac a                           161
//
ID   GYPSY2_I    repbase;    DNA;    INV; 6909 BP.
XX
AC   .
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Internal portion of GYPSY2 retrovirus-like element, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   LTR-retrotransposon; Gypsy superfamily; internal portion;
KW   GYPSY2_I; GYPSY2_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6909
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY2_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
RN   [2]
RP   1-6909
RA   Bao W.;
RT   "Sequence updated with consensus.";
RL   Direct Submission to Repbase Update (06-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   There is ~60% identity between GYPSY2 and GYPSY internal
CC   sequences.
CC   GYPSY2 was active recently, since its provirus is flanked by
CC   identical LTRs.
CC   [2]: updated with a full-length consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           863..2215
FT                 /product="GYPSY2_I_1p"
FT                 /translation="MTSPFLFYRNTRRKCSDSDSDCDDHPIRCSVPRRTPS
FT                 PPPSPRPADSVMDPDQLKFVIQAAVTAALAEQAAANKVLLDKVNSMSQQLA
FT                 AAHITPPEVQAYAPIEIRNDIRCDEPLDAVKCLPEFAGAHESYVSWRQAAL
FT                 AAYRIFRPYDGSSRHYQAVIIIRNKIRGAADVVLASFGTVLNFDAIISRLD
FT                 FTYSDKRPVHVIEQELATLRQGNMSLLQYYDEVGKKLTLLTNKVNMSYEPV
FT                 LAKGLCEKFREDALRVFVSGLKRSLTDVLFSAKPRDLPSALALAQEVESNH
FT                 ERYAFAANFARSIEEKEYKASTQQRVKPPQQEAQASGSKNPHFSRQNKQQG
FT                 QSGQRNAEQQTRASAPEPMEVDPSLSKFRQPIQASAGVSKRSAMSDRSNGK
FT                 GKQQRVNHVTQDAGQGQTSYAEAANGAVAQIEDDAESDSDALNFLGENPCY
FT                 PSLDEE"
FT   CDS           2230..5268
FT                 /product="GYPSY2_I_2p"
FT                 /translation="MSFLIDTGTSKNYIRPHKGLRGVRPVNSQFTLHSIHG
FT                 STTVTQKCFVALFNVKATFFILPDLSTFDGIIGLDLLAQAGASLCLASGQL
FT                 KWGTEVEKISFHKCTDVNFTDVDCSDAPASVRETFRKLLKARKKAFADPNE
FT                 ALPYNTSVVATIRTVSEEPIYAKLYPYPMGVADFVNKEIQDLLRNDIIQKS
FT                 ASPYNNPIWVVDKKGTDDAGNRKKRLVIDFRKLNEHTIPDKYPMPNISMIL
FT                 GNLGKARYFSTLDLKSGYHQVVLAERDREKTSFSVNGGKYEFKRLPFGLRN
FT                 AAGIFQRTIDDILREQIGKFCYVYVDDVIIFSQDEEAHIKHVDWVLKSLQE
FT                 ANMRVSIEKSRFFKKSVSFLGFIVTSNGATTDPEKVKAIKEFPEPKTVFEV
FT                 RSFLGLASYYRCFIRDFAAIARPISNILKGENGTVSRHRSRNIQVHFSESQ
FT                 REAFQKLRNILASEDVMLSYPDYKKPFDLTTDASAYGIGAVLSQEGRPITM
FT                 ISRTLKDSEANYATNERELLAIVWALAKLRHYLYGVKDINIFTDHQPLTFS
FT                 VSESNPNAKIKRWKARIDEFNARLFYKPGKENLVADALSRQQLNVLEQEEP
FT                 ESCAATIHSEVSLTHTIESTDKPLNCFQNQIILEEARFPSKNTLILFGNKR
FT                 RHTVNFVCRGSLLDELADIIVPRAVNAFHCDLHTLAMIQDEIVRRFPATKF
FT                 WHCRNRVVDVLRIEERREILTAEHNRAHRAAQENVKQVLSEYYFPKMAKLA
FT                 NEIVQNCRTCARAKYDRHPKKQELGETPIPSHTGEMLHIDIFSTDKKFFLT
FT                 CVDKFSKFAVVQPIASRTIEDLKPALLQLMNFFPRAKTIYCDNEPSLKSHT
FT                 IVSMLCNNFGVSVTNAPPLHSTSNGQVERFHSTLLELARCIKIDKGLSDTV
FT                 EIIMLATTQYNKSIHSVIDRRPADIVLTHPEEPQLEIHNRIQKAQTALRAR
FT                 ENASRQNRTFDVGEKVLVKSNRRLGNKLTPLCEEKAVEADMGTTVLIEGRV
FT                 VHKDNLK"
FT   CDS           5667..6908
FT                 /product="GYPSY2_I_3p"
FT                 /translation="MRNLLNVDSAHLRDLLDALGAHHRVARSLDFLGSILK
FT                 VVAGTPDASDLQNSRVIEARLIDANNRQIEINTKIQSQINKLTATVNLILK
FT                 TAKASQIDSGHLYETLLARNRMLMMELQNLMLAVTLAKMNIVSPNILDHAD
FT                 LSSVWLEEPTNTPIGDLMSVSSVKVLQSNNALHFIIKFPIIKFACKKITIF
FT                 PVSHEGAMLRLDDGIIAECDNEIHTVKACTASTSATFCQLSSGSSCAKELH
FT                 AGGEAHCEIQPSSLDPITYVDEGIVIINDRAAKVQVDNGSEIWVHGTHLVT
FT                 FARRAVINGTLYVNQNGIQNRVPGVPKFPLLNITSHQSVLSLPYLRRLNEG
FT                 NLETIRRFREEFDAERPQRVALTVAASCCLLLCVAIVGWRAWKAKRSARQL
FT                 NVAIAELRSAEGGLRLEGGG"
XX
SQ   Sequence 6909 BP; 2043 A; 1690 C; 1614 G; 1562 T; 0 other;
     ggcgcccaac cagtggtatt tgacagtgcg ttagtcatta cccacgaaca aaaaaaaaga        60
     aaaaaacaaa cttaaaaaaa aaaaaaaaaa aatctaacta caagtgcaaa acaaacaaaa       120
     taaaaaccta actacaagtt aatcagactc agccgcatta acagggctgt agcaacaaaa       180
     caagtgcttg tgaccactgt tgtttgtaac agaactattt aacaagtggc tgctgctgac       240
     ctacgtcaac acaggcagca cagctacgtc attaacctcg cctcttgagt gcagttggct       300
     gaggtgcgct atagcgcaaa cttaatttca cgtcacaccg aagccgcggg tgctcttcgg       360
     gcagcgactt atcgccagat tagcgcgcaa gctatctgga cagcggagac ggcagcgcgg       420
     gaggcagaga caagcagtgt acaaaaaaac aagaaaccaa ctccagtgta gaacacaaca       480
     caacaccaaa ataaaaatgt aagtgggcac ctttttttaa aactgctctt aaacctgcga       540
     aataaaaata agcatataaa cacatttttg caagtgtctt cttaaatgaa attaaataat       600
     aaatagtttt aacatacatg aaactagtaa tggattaggt tgacggaaaa ctattggcag       660
     caaaaatata gtaaacattt gttgaataat tactaaaagc ggcgcatcaa atgcatgcac       720
     gcacaatttt tttttccgtc tgccttcatc ttgttcgttt tgtttggtcg ttcaacgtaa       780
     tacgatccat ggaattttgc aactttgttg cctccgtcct caagcgttgt gttcgagttt       840
     tcgttgttta cattagaggc atatgacttc acccttcctt ttctatagaa acactcgccg       900
     aaagtgtagt gattctgact ctgattgcga cgaccatccc attcgctgtt cagtgccaag       960
     acgcacaccc tcacccccac cctcaccacg tcctgcagac agcgtcatgg acccagacca      1020
     gttgaaattc gtaatacagg cagccgtcac cgctgcctta gctgagcaag ccgccgcaaa      1080
     taaggtcttg cttgacaaag tcaactcaat gtcccagcag ctggccgcag cgcatattac      1140
     gccaccagag gtgcaagcct atgcacccat agagataaga aatgacatcc gctgcgacga      1200
     gccactagat gccgtcaaat gcttgcccga gtttgcaggc gcacatgaat cgtatgtttc      1260
     atggagacag gcggctctcg cagcctatcg tatttttaga ccgtacgacg gcagttcacg      1320
     ccattatcag gcggtcataa ttataagaaa caaaatcagg ggggccgcgg acgttgttct      1380
     agcctctttc ggcacagttc ttaactttga cgcgattata agtcgcctcg acttcacgta      1440
     cagcgacaaa cgtccagttc acgtaatcga gcaagagctg gccacgctga gacaaggcaa      1500
     catgtctctg ctgcaatact atgatgaagt cggcaaaaag cttacattgt tgactaataa      1560
     agtcaacatg tcatacgagc cggtcctagc aaagggcctc tgcgaaaagt tccgcgaaga      1620
     tgcactacgt gtgtttgttt cgggactcaa gcgtagtctc acagatgtgc tgttctcagc      1680
     aaagccaagg gacttgccgt cagctctggc gctcgcgcaa gaggtggaat cgaaccatga      1740
     aagatatgcg ttcgctgcca acttcgcgag aagcattgag gaaaaagagt acaaggcaag      1800
     tacccaacag cgggtcaagc caccccaaca agaagcacag gcaagcgggt caaagaaccc      1860
     acattttagt aggcagaaca agcagcaagg ccaatccggc cagcgaaatg ccgagcagca      1920
     aactcgcgcc agtgctccag aaccaatgga ggtagacccc tcgctgtcaa aatttagaca      1980
     gcccatccag gcctccgctg gcgtcagcaa gcggtcggcc atgtccgatc gctctaacgg      2040
     aaagggcaag caacaaaggg tgaatcatgt aacacaagat gctgggcagg ggcagacctc      2100
     gtacgccgaa gccgccaacg gcgctgtggc gcagatcgag gatgatgccg aaagtgattc      2160
     tgacgccctc aattttttag gggaaaatcc ctgctacccg tcattagacg aagagtagca      2220
     gggcaggata tgagcttcct tattgacacc ggcacgtcaa agaattacat cagaccacac      2280
     aaggggttgc gtggcgtccg tccggttaac tcgcaattca ccttgcattc catccatggc      2340
     tcaaccaccg tcacacaaaa atgctttgtt gcgttgttca acgtgaaagc aacatttttc      2400
     attttaccag acttgtcaac cttcgatggg ataatcggtc tcgatttgtt agctcaggct      2460
     ggggcgtcac tctgtttggc ctccggtcag ctcaaatggg gtacggaagt tgagaaaatc      2520
     tccttccaca aatgcactga tgtcaatttc accgatgtgg attgctcaga tgcacccgct      2580
     tcagtgcggg agacttttcg gaaattatta aaggccagaa aaaaggcctt tgcagaccca      2640
     aacgaggctc taccgtacaa tacttcggtg gttgccacca tcagaacggt gagcgaagag      2700
     cccatctatg ccaagctgta cccatatccc atgggcgtag ctgacttcgt taataaggaa      2760
     atccaggatc tcctaagaaa cgatataatt cagaaatcgg catcccccta caacaacccc      2820
     atatgggtgg tagataaaaa gggcaccgat gatgcgggaa accgcaaaaa gcgcttggtg      2880
     atagactttc gcaagcttaa cgagcacacc attcccgata aataccccat gccaaatata      2940
     tcaatgatat taggcaattt gggcaaagca cgctattttt cgacactgga tcttaaatca      3000
     ggataccatc aagtcgtact agcggagcgc gatcgcgaaa aaacttcttt ctcggtaaac      3060
     ggaggaaagt atgagtttaa gagattgcca ttcggcctca ggaacgccgc cggcatcttc      3120
     caaagaacga tcgatgacat cctacgggaa caaataggca aattttgcta tgtttatgtt      3180
     gacgatgtga tcatcttctc gcaagacgag gaggctcaca tcaaacatgt agattgggtg      3240
     ttaaagagct tacaagaagc taacatgagg gtatcgatcg agaaatcgcg tttttttaag      3300
     aaaagcgtga gctttctcgg gttcattgtc accagtaacg gtgcaacaac ggacccagaa      3360
     aaggtaaagg ccataaaaga atttccagag cctaagacgg tattcgaagt cagatcgttt      3420
     ctgggcctcg caagctacta taggtgtttc atcagagact tcgctgctat agcaaggccc      3480
     atttcaaaca tattaaaggg cgaaaatgga acagttagta ggcatagatc gaggaacatt      3540
     caggtgcatt tctctgagtc ccagcgagag gcgttccaaa agctgcgcaa tatattggca      3600
     tcagaagatg tcatgctcag ctacccggac tataagaagc catttgatct aacgacagat      3660
     gcttcagcct atggtatagg tgcggtgttg tctcaagagg gccgccctat aacaatgatt      3720
     tcaagaactc ttaaagacag tgaagccaac tacgcgacta acgagcgtga gttattggcc      3780
     atcgtttggg ccctggctaa actgcggcat tacttgtatg gagtgaaaga tataaatatc      3840
     ttcactgacc atcagccgtt aacattttct gtgtcggaat caaacccgaa cgcaaaaatt      3900
     aagaggtgga aggcccgcat agacgagttc aatgctcgtc tattttacaa gcccggtaaa      3960
     gagaacctgg tagcggacgc cttgtccaga caacagctta atgtgctgga acaagaagag      4020
     cccgaatctt gtgcagcaac gattcacagt gaggtgtctc tcacccacac aatcgagtca      4080
     acggacaagc cattgaactg cttccagaac cagataatac tggaagaagc acgtttcccg      4140
     tctaaaaata ccttgatttt attcgggaat aaaaggcgcc acacggttaa cttcgtctgc      4200
     aggggatctt tattagacga actggcagac ataatcgtcc caagggccgt aaacgccttc      4260
     cattgcgatt tgcacacgct cgcaatgata caagatgaga tagtccggag gttcccagcc      4320
     acaaagttct ggcattgcag gaaccgtgtc gtggacgtac tcagaatcga agaaagaagg      4380
     gaaatcttaa ctgctgaaca taatagggcg cacagagcag cacaagaaaa tgtaaagcag      4440
     gtattgtcgg aatactattt ccccaaaatg gccaagctgg ccaacgagat cgtgcagaat      4500
     tgcaggactt gtgcaagggc aaagtatgac aggcacccga aaaaacaaga actcggtgaa      4560
     acgccaatac cgtcacatac aggggaaatg ttgcacatcg acattttctc taccgacaaa      4620
     aagtttttcc tcacttgcgt cgacaagttt tctaaatttg ccgtcgtaca accaatcgct      4680
     tcgagaacta ttgaagacct gaagccagcg ctgcttcagc tcatgaactt tttcccaagg      4740
     gcaaagacca tttattgcga caacgaaccg tcgttgaagt cgcacacgat cgtgtccatg      4800
     ctgtgtaaca actttggtgt aagcgttaca aacgcaccac cactgcacag cacctccaac      4860
     gggcaggtgg agcgtttcca tagcacgttg ctggagctag ccagatgcat aaagatagac      4920
     aagggcttga gtgatacggt cgaaataata atgttggcca ctacccagta taataagtca      4980
     attcactcgg tcatcgacag gagaccggct gacatcgtcc taacacaccc cgaggagcca      5040
     cagctagaga tccacaatag gatccagaag gctcagaccg cgctgagggc cagagaaaac      5100
     gcctcgcggc agaataggac attcgatgtt ggcgagaaag tgttggtaaa atccaaccga      5160
     agactcggca acaagctcac gccgttgtgc gaagaaaaag ctgtagaagc ggacatgggg      5220
     accacggtcc ttattgaggg gagggtggtc cacaaggaca atttaaaatg acgcgctcag      5280
     cagcgaggtc agtgtttcgc ttaattttaa attttttcta gccacttggc gtaattttta      5340
     atagatctaa gcgtagcgcc atccgcgcac attatattct taagcatttt tattattatt      5400
     ggtgttgggt tccccttgtc gacaaaataa aaaaatcaac catttaaact ttcacccaca      5460
     ggaccaatct tatccttctc gtgtctctat cattggcatc ggctcacatc accgattatt      5520
     cgcgcgccaa atacattccc atagtcgatg gccagatctt ggtgtgggag aatttcgcct      5580
     acgtgaggca ctccgcgaat ctttcggagt acgcacgggt agtagaggag acggtcggtc      5640
     tgcttagcca cttcccgcag tcacacatga gaaatttgct gaatgtagat tcagcacacc      5700
     tccgggactt gctggatgcg ctgggcgcgc accatcgagt ggccagaagc ttggacttcc      5760
     tgggctccat actaaaggtt gtagccggta cacctgatgc cagcgatttg caaaacagta      5820
     gggtcataga ggcgcgattg atagacgcga acaataggca gatagaaatc aatacaaaaa      5880
     tccagagtca aattaataaa ttaactgcca ccgtcaactt aatcctcaaa acagcaaaag      5940
     cgtcgcaaat tgactccggt catttgtatg aaacgttgct cgcgagaaat agaatgctca      6000
     tgatggagct tcaaaattta atgttggccg tgacacttgc aaaaatgaac attgttagcc      6060
     caaatattct tgatcacgca gatttgagtt cagtttggct agaggagccc accaacaccc      6120
     ccatagggga cctcatgtcc gtatcgtccg taaaggttct gcagtccaat aacgcattac      6180
     actttatcat caaatttccg ataattaagt tcgcctgtaa gaaaattact attttccccg      6240
     tcagtcacga aggagccatg ctacgtttag atgatggcat tatcgcagaa tgcgacaacg      6300
     agatccacac cgtcaaagct tgcaccgcat caactagcgc caccttctgc cagctatcat      6360
     caggcagctc ttgtgcgaaa gaactccatg caggcggcga ggcacactgc gaaatacaac      6420
     ccagcagcct ggaccccatc acctatgtag atgaggggat cgtcatcatc aacgacaggg      6480
     ccgccaaggt acaagtggac aacggctctg aaatctgggt gcatggtacg catcttgtta      6540
     ccttcgcccg acgtgccgtc attaacggaa ccctgtacgt caaccagaac gggatccaga      6600
     acagagtacc aggggtacca aaattccctc tgctgaacat cacctcccac caaagcgtgc      6660
     tcagtctccc gtaccttcgt cgtctaaatg aaggtaactt agagacaatc cggaggttca      6720
     gagaagaatt cgacgccgaa agaccccagc gagtggcact gaccgtagca gcatcatgtt      6780
     gcctcctatt atgtgttgcc attgtgggct ggcgcgcatg gaaggccaag aggtccgcaa      6840
     gacaactgaa cgtggcgatt gcggagttaa ggtcggccga gggcggcctc cgtcttgagg      6900
     ggggggggg                                                              6909
//
ID   GYPSY2_LTR  repbase;    DNA;    INV; 353 BP.
XX
AC   AL035631;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   22-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   Long terminal repeat from GYPSY2 retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY2_I; GYPSY2_LTR; LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-353
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY2_LTR.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; AL035631; Positions   18238   17886.
XX
CC   Identical GYPSY2_LTRs flank GYPSY2_I sequence.
XX
SQ   Sequence 353 BP; 91 A; 88 C; 72 G; 102 T; 0 other;
     agttaaccaa agctaacgtc gctcccacgg gcgtatgaaa tacgacaaca tcggcatact        60
     gcaacgtaag cattatgccg gatgtcgata cgtagccggc agacactgca gatttgcgtg       120
     gccgctacga atatgagatc gcaacaatgt gtttcgtttt catgctagct ccaaagtttg       180
     aattcttgta ttttgtattc agttctgatt ttgtctccga cgctacagct ccgcttagct       240
     cggtataata aaacattaaa agtaactcct aatcttttat tgtcacggct ccgcctgaca       300
     cttggttagt aaaagccgcg cgcgttaacc gccggccaac cctttttcta att              353
//
ID   GYPSY3-I_AG repbase;    DNA;    INV; 4326 BP.
XX
AC   EAA13694;
XX
DT   02-MAY-2003 (Rel. 8.04, Created)
DT   02-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY3-I_AG is an internal portion of the GYPSY3_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY3-I_AG; GYPSY3-LTR_AG; GYPSY3_AG; Gyspy clade; integrase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4326
RA   Pavlicek A., Kapitonov V.V., Drazkiewicz A. and Jurka J.;
RT   "GYPSY3_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Direct Submission to Repbase Update (30-APR-2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY3_AG is a family of Gypsy-like LTR retrotransposons.
CC   GYPSY3-I_AG, an internal portion of GYPSY3_AG, is flanked by
CC   GYPSY3-LTR_AG LTRs. The GYPSY3-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 6 copies; they are
CC   less than 1% divergent from the consensus sequence. The A.
CC   gambiae
CC   genome contains about 20 copies of GYPSY3_AG.
CC   Some copies of GYPSY3_AG are 100% identical to each other.
CC   They can be active retroelements.
CC   The consensus sequence encodes the 1410-aa GYPSY3_AGp protein
CC   (pos. 80-4309), with reverse transcriptase (pos. 526-694)
CC   and integrase (pos. 1077-1223) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..4309
FT                 /product="GYPSY3_AGp"
FT                 /translation="MNNENLETVINQMAQLLQQMAAFKTRSPDEILESLSK
FT                 TIEEFRFDEENNITFEKWYVRFKDLFQNDASSLNDEAKVRLLLRKLETSAH
FT                 SRYVNYILPKQPHENSFEETVNILKKIFGKQYSVFHKRYQCLQIVKSALED
FT                 IITYGGRVNKACEDSEFENLKLDDFKCLIFICGLQAPEFSDIRARLLSRIE
FT                 NATPEAKVNIQTLMAEFQRLINLKADTTMIENQSRSKHSVHAVSEKKPYRL
FT                 PQPSRFDNSKDQRQPKSDSNTVPRTPCWQCGKMHFVRDCNFTDHLCKVCKN
FT                 VGHKEGYCKAMRSKSSNNNTYQKSEKNQNQNQKKSQGIFVNHVTKNTAKRK
FT                 FISIIINGITTSLQLDTASDITVISKTTWQHLGQPKLSQASIEASNASGEQ
FT                 LKLIGEFECEVILNAITEKCVCFVTSSPVLNVIGIDWIDRFNLWAIPFDVL
FT                 CKKVSSACPKDRIVQLQSKYPTVFDDSLGHCTKTKVKLFLKPNVKPVFCPK
FT                 RPVPFNTIALVDAELSRLQSLGIITPIDFSEWAAPIVAIRKPNGKVRICAD
FT                 YSTGLNEALESNHYPLPTPEEIFAQLNGSVVFSIVDLSDAYLQVEVEDESK
FT                 HLLTINTHRGLFQFNRLAPGVKSAPGAFQRLVDGMIADIPGVRTFLDDAII
FT                 FGKTWEAHKQSLDTFLQRLKEYGFHVKLEKCHFYQTEIVYLGHVVDRNGIR
FT                 PDPEKLKTIASIPAPTNISELRSFLGAVNFYGRFVRNMHELRHPLDQLLKK
FT                 DTKWKWNSDCQTSFEKFKKVLQSDLLLTHYDPNLPIIVAADASSTGVGAVI
FT                 FHKFPNGYLKAIQHASRTLTSAEQGYGQPEKEALALTYGVTKFHKYLLGRK
FT                 FTLLTDHKPLLSIFGSKKGIPLHTANRLQRWALMLLNYDFTIEYVSTTEFG
FT                 CADMLSRLIDRCKQPEEDYVIASISLEEDIQNVMHESLKQVPVSFADIQKA
FT                 TRLDETLQAVLKFIREGWPNEASSIKNQDIRSYYTRKESLTHVDGCILFHN
FT                 RVVVPNIYRKKVLQQFHRGHPGMVRMKSISRSFVFWPGMDVDIENFVRRCT
FT                 SCCTAGKAPIKETPESWPVPEKPWSRVHVDYAGPVDGVYFLVVVDPYTKWP
FT                 EVYATKTTTAKTTIKFLTQSFATFGVPETIVSDNGTQFTSFEFQAFCKQLG
FT                 ICHIRTAPYHPQSNGLAERFVDTLKRTLRKIRAGGETLDEALQTFLQVYRT
FT                 TPTPDKSPAELMFQRPIRTVQSLLLPPVSRSRNEKPEAGRKFFDPGEAVYA
FT                 QVHRNNSWEWKPASIVERVGRVNYNVFLEDNQRIIRSHANQLKKRLQEETS
FT                 CGNRNCHDTGNLLTIFFDEFELGTPQAVENSIEMTEQEHYYSADEESAEEI
FT                 EGENWQTSSSTVTTQATPPMPASSAQPVKAERPRRIRRPPARFEPYW"
XX
SQ   Sequence 4326 BP; 1395 A; 905 C; 893 G; 1133 T; 0 other;
     ttttggcgac gaggattatt actgaacccg gaacccgaag ctcacgagat tctgaagcta        60
     acgagaatta gcgtcaagga tgaacaatga aaaccttgaa accgttatca accaaatggc       120
     tcaacttctt caacagatgg ctgcttttaa aactagaagt cctgacgaaa tccttgaatc       180
     tttatcgaaa accatcgagg agtttcgttt cgatgaagaa aacaacatca cttttgaaaa       240
     atggtatgta cgtttcaaag acctttttca aaacgatgcc agcagtttga atgacgaggc       300
     gaaagtgcga cttttgctga ggaagctgga aacgtccgct cacagccggt atgtgaatta       360
     cattcttccg aagcaaccgc atgaaaattc gtttgaagaa accgtcaata ttctcaaaaa       420
     aatcttcgga aagcaatatt cggtgttcca caaaaggtac cagtgcttgc agatagtgaa       480
     atctgcatta gaagatatca tcacttacgg cggaagagtg aataaggcat gcgaggattc       540
     tgagttcgag aatttgaaat tagacgattt caaatgtcta attttcattt gcggactgca       600
     agctccggaa ttctcggata tcagagcaag actgctatct cgaatagaaa acgcgacgcc       660
     ggaggctaaa gtgaacattc aaacactaat ggcagaattt caacggctta tcaatctgaa       720
     agcggataca acgatgatcg aaaatcaatc aagatcgaag cattccgtgc atgcagtttc       780
     agagaagaaa ccgtatcgtt tgccacagcc ttcccgattc gacaattcaa aagatcagcg       840
     tcaaccgaaa tcagattcga atactgtccc tcgtactcct tgttggcaat gtggaaaaat       900
     gcattttgta cgggattgca attttacaga tcatctctgc aaagtgtgca aaaatgtagg       960
     ccacaaggaa ggttactgta aagccatgag atcaaaatct tcaaacaaca acacatatca      1020
     aaagagtgag aagaatcaaa atcaaaatca aaagaaatct cagggaattt tcgttaatca      1080
     tgtcacgaaa aacactgcta aaaggaaatt tatctctatc ataatcaatg gcataactac      1140
     atcactccaa ctggacaccg caagtgacat aacagttatt tctaaaacaa catggcaaca      1200
     tttgggtcaa ccgaaacttt ctcaagcatc cattgaagca tcgaatgcat cgggagaaca      1260
     actcaagctt atcggtgaat tcgaatgcga ggttatcctt aatgcgatta cagagaaatg      1320
     tgtttgtttt gttacatcat caccagtcct aaatgttata ggtatagatt ggatagatag      1380
     gtttaatcta tgggcaattc ccttcgatgt actgtgtaag aaagtttcat cagcatgtcc      1440
     aaaggatcga atagtacagc ttcaatcgaa atatccaaca gttttcgatg attcgcttgg      1500
     acattgcaca aaaacgaagg tgaaactgtt tctgaagccc aatgtaaaac cagttttctg      1560
     tccaaaacga ccagtaccat tcaatactat cgctcttgtg gatgcggaac tatcaagact      1620
     acaatcacta ggcatcatca caccaataga cttttcggag tgggctgctc cgatagtagc      1680
     cattcgcaag cctaatggta aagttcgaat ttgtgcggat tattcgacgg ggcttaacga      1740
     agctttagag tcaaatcatt atcctctacc tactcctgaa gaaatttttg cacagttgaa      1800
     cggaagtgtt gtattcagca tagtcgattt gtccgatgca tacctacaag tagaagtaga      1860
     agacgaatct aaacaccttc ttacgatcaa cacacataga ggtctttttc agttcaaccg      1920
     tctcgcaccg ggagtcaaat cagcacctgg agcttttcaa agactagttg acggtatgat      1980
     tgctgacatt cctggcgtta gaacatttct agatgatgct ataattttcg gtaaaacttg      2040
     ggaggcacac aagcaatcat tagacacatt tcttcagcgt ttaaaagaat atggcttcca      2100
     cgtcaagctg gaaaaatgtc atttctatca aactgaaatt gtctatttgg ggcatgtggt      2160
     agatcgcaac ggcatacgtc ctgacccaga gaagctgaaa accatcgcat ctattccagc      2220
     accaacgaac atttccgaat taagatcgtt cttaggagct gtgaatttct acggccgatt      2280
     tgtgagaaac atgcatgaac tcagacaccc gttagatcaa ttgctaaaga aggatacgaa      2340
     gtggaagtgg aattcggatt gtcagacatc gttcgaaaaa ttcaagaaag tactgcaatc      2400
     tgacttactg ttgacacatt atgatccgaa tcttcctatc atcgttgcag cagatgcgtc      2460
     tagcaccggc gttggcgcag tcatttttca taaatttccg aacggatatt tgaaagccat      2520
     tcaacatgct tcaagaacat taacgtctgc agaacaaggc tacggacaac cggaaaaaga      2580
     agctctggct cttacttatg gggtaaccaa atttcataag tacttacttg gtcggaaatt      2640
     tactctttta accgatcata agcctttact atccatattt ggttcaaaaa agggaattcc      2700
     tttgcacaca gcaaaccgac tccaacggtg ggcattgatg ttattaaact acgattttac      2760
     catcgaatat gtttcaacca ccgagtttgg gtgcgctgac atgctatcaa ggctaatcga      2820
     ccgttgcaag caaccagagg aagattacgt tatagcttcg atttcacttg aagaggatat      2880
     tcaaaacgtc atgcacgaat cattgaaaca agtaccagta tcatttgctg acattcaaaa      2940
     agcaacaaga ttggacgaaa cactgcaagc tgttttgaaa ttcatccggg aaggctggcc      3000
     gaacgaagcg tcgtcaatca aaaatcaaga cattcgttcg tattacacac gaaaagaatc      3060
     gttaacgcat gtagatggat gtatcttgtt tcacaacaga gttgttgttc caaacattta      3120
     caggaaaaag gtacttcaac aattccatcg cggtcatcct ggaatggtgc gaatgaaatc      3180
     catttctcga agtttcgttt tctggccggg aatggatgtc gatatcgaaa actttgtccg      3240
     gcgttgtact tcatgttgca ctgctggcaa agcaccaatc aaagaaacac ctgaatcttg      3300
     gcctgtgccg gaaaagccat ggtcacgggt acacgtggac tatgccggtc ctgtagatgg      3360
     cgtgtatttt ttggttgtag ttgatccata cacaaaatgg ccagaagtat atgcaaccaa      3420
     aactacaaca gcaaagacaa ctatcaagtt tttaacgcaa tcattcgcaa cgtttggtgt      3480
     tccagaaact atagtctctg ataatggtac ccagttcacc agctttgaat tccaagcatt      3540
     ttgcaaacaa ttgggtattt gtcacatccg tactgcacca taccatccgc agtcaaacgg      3600
     tttggcagaa cgtttcgtgg acacactaaa gcgtacattg cgaaaaattc gagcaggagg      3660
     agagacttta gatgaagctt tgcagacttt tttgcaagtt tatcgaacca cacctacacc      3720
     agataagtct ccagctgaat tgatgtttca gcggcctatt cgaacagttc agtcattatt      3780
     actacctcca gtttcacggt cacgaaatga aaagccagaa gctggtagaa aattcttcga      3840
     tcctggagaa gcggtttatg cccaagtcca ccgcaataat tcctgggagt ggaaaccggc      3900
     atcaatagtc gaacgagtcg gtagagtgaa ttacaacgtg tttttggaag acaaccagcg      3960
     aattattcgc tcacatgcaa atcaactgaa gaagcgtcta caggaggaaa catcgtgtgg      4020
     aaatagaaat tgtcacgaca ctggaaattt gttaactatt ttctttgacg aatttgaatt      4080
     gggaactcca caggcagttg aaaactcaat tgaaatgact gaacaagaac attactattc      4140
     agctgatgaa gagtccgctg aagaaattga aggagaaaat tggcaaacat catcgtccac      4200
     agttactact caagccactc caccgatgcc tgcatcttct gctcaacccg tgaaagcgga      4260
     aagacctcga agaattcgta ggccaccagc caggtttgaa ccgtattggt gaattaaggg      4320
     gggaga                                                                 4326
//
ID   Gypsy3-I_AP repbase;    DNA;    INV; 4801 BP.
XX
AC   Contig4708;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3AP;
KW   Gypsy3-I_AP; Gypsy3-LTR_AP.
XX
NM   Gypsy3-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4801
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 441-441 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3749-4225] - Integrase core
CC   LTRs are 94% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           362..4618
FT                 /product="Gypsy3-I_AP_1p"
FT                 /translation="MGENSASTSKAGHEVLSPRRLRNGSVLPSSSDVITSV
FT                 NNRANEDTDSQRPSSVLPQSHPVPVDNQLLTNALLSLMEQNKVLLSRLVND
FT                 STPPLVQSCVPNNNGYYVMPDFNHSLTDFSGRESNAEARAWLQSIESVAKL
FT                 HNWPDNFKLETVRSKLIGPSHNWYVGRTFSNWTSFVDQFTTTFVGHEQCTV
FT                 DRVKIMSSRVQLKGECVIEYFHHKARLCREILLPFQEVKMQIIEGLYYHDM
FT                 CNYLMARTHMSEDDLLTDIKSYNNLRNARSSRFRSAETTESFNKNNGFSFN
FT                 RRTDVKNHDTVQRLPPEMKSSVPKDMSNVTCHRCGIKGHIAPACTAKVQRS
FT                 EKRSCFRCNGHGHLARDCPQNRSNQHPASQTSDHGENVSILERPPQDIVPP
FT                 YTLSAKIMYPNGNCSSITALIDTGSPVSLLKLMVVSYTSGIKPPPSGLIGI
FT                 NGSMLNIIDEFFADLHHVDLDTPINLNFKVVPDSTIQTDCLLGRNFLAHPR
FT                 VNLSVIDGQFIITFKQTDNVPFNEILSLDFDLNNYRELDIDLNINDKLSND
FT                 VITSVKRIYINNYVKHCAQDIDDDLPEMHIQLKAHNSFYFRPRRLSFYEKE
FT                 KLQIILDDMLKKHIIRPSTSEYSSPIVLVKKKNGDLRLCVDYRELNKHIVK
FT                 DRYPLPLIDDNLDLLRGKKYFTCFDLKDGFHHIYVARDSIKYTSFTTPLGQ
FT                 FEYLKLPFGLATGPACFSRFIKNIFDEFIRKKEVIVYFDDIMVATETIDEH
FT                 LDILARILTTMKNKKLEIRLDKTQFLKSEVIYLGYRVNADGIQPNPKNVAI
FT                 IDNYPIPSNQKELHSFIGLASYFRRFIPNFALLTQPLYKLLKKNVIYEFGE
FT                 EQLKSFDIIKSKLNAQPLLSIYDPNAQTELHCDASSQGYGAILLQQQNDNN
FT                 FHPVFYYSHRTTDVESRYHSYELEMLAIVNAVKRFHIYLQGVHFKIVTDCN
FT                 SVTLTLRKKDINPRIARWALFLQNYSYEIEHRPGSKMQHVDALSRCRHILV
FT                 LEGCTFNQTLAIRQSTDPEIKNLIKILEKSEHPLFEMRNGLVYRKHGNRLL
FT                 FYVPAGMYEQIIRTCHDDMCHIGVNRTIEFIKQVYWFPKLAEHVKKYINNC
FT                 LKCIIFSPKEGKVEGLLNIIDKDNKPFQTIHIDHYGPLNKTKNRFRYILVV
FT                 VDAFSKFLILYPVRSVTTKETCLKLVQYFSYYSKPVKIISDRGSCFRSDVF
FT                 REFCEQHEIKHIMTAVGSPQSNGQVERYNRSLTVMLSKLMHEHSQNWNEHL
FT                 NKIQFAINNTHNRSINNTPSKLLFGMNQVGNTNDYIKIYLETLNENDNDRE
FT                 FETTRQNAFDITRQNQLKNKAYYDAKHKQANTYSIGDYVMVKNVDTTPNTC
FT                 KKLIPKFKGPYKILKILPNDRYVVADIDGYQVTQIPLNTVIAARDIKPWVT
FT                 FKKND"
XX
SQ   Sequence 4801 BP; 1627 A; 817 C; 846 G; 1511 T; 0 other;
     gccgttagta gtagtagtag tccagcgaca ttcggcgata cagtaggccg tggtgctcgt        60
     cgtttttttt taattgtatt tgagtattaa ttattagtat tttatgccag gtggtctcga       120
     tagtggcggg atactggcga gaagtgttgt gtgttaatta tttaatatat atataagtgt       180
     aataactttt cataataaga tttaataaat gtcagcgcgc ataactatat aattttgttg       240
     ttcctgactt aaatgccctc tgacctacaa attcagaagt ggaattcgtt tggggagtat       300
     ttgaattcaa ggtgtttcga aattaaaacg taagtgtgta ttatttcgtt ataagtcgaa       360
     aatgggcgaa aattcggctt caacatctaa agctggtcac gaggttttgt cgccgagacg       420
     attgcgtaat ggttcggttt tacccagttc tagtgacgtc ataacgtcag tgaataatcg       480
     agcgaatgaa gataccgatt ctcaacgacc atcgtcagtg ttaccacagt cgcacccagt       540
     accagttgac aatcagttat taaccaatgc actgttatcg ctaatggaac aaaacaaagt       600
     gttgttgtca agattggtaa atgatagcac accaccgctt gtgcagtcat gtgtacccaa       660
     taataatggt tactatgtta tgccagattt taatcattca cttactgatt tttccggacg       720
     tgagtctaac gcggaggctc gagcatggtt gcagtcgatt gagagtgtag caaaattaca       780
     caattggcct gataatttta aattagaaac agttcggtcg aagctcatag gcccatccca       840
     taattggtac gtcggccgta ctttttcgaa ctggactagt tttgttgatc aatttactac       900
     cacttttgtg ggacatgagc aatgtactgt tgatcgtgta aaaataatgt ctagtcgtgt       960
     tcagttgaaa ggtgaatgtg ttattgagta cttccaccac aaagctcggt tatgtcgcga      1020
     gattttattg ccgtttcaag aagttaaaat gcaaataatt gagggattat attatcacga      1080
     tatgtgtaat tacctcatgg ctcgaactca tatgagtgaa gatgatttat tgacagatat      1140
     aaaatcgtat aataatttgc gaaatgcaag gtctagtcga tttcggtcgg cagaaactac      1200
     agaatcgttc aataagaaca atggtttttc attcaaccgt cgcacagatg ttaagaacca      1260
     tgataccgtt caacgtttac cacctgagat gaagtccagt gtaccgaagg atatgtccaa      1320
     cgtcacatgc catcggtgtg gtataaaagg tcatattgct ccagcgtgca cagccaaggt      1380
     acaacgaagt gaaaaacgat cctgtttccg gtgcaatggt catggacatc tagcacgaga      1440
     ttgtccacag aatagaagta accaacatcc agccagtcag acgagtgatc atggtgagaa      1500
     tgtgtcaata ttggaaagac ccccccaaga tattgtaccc ccatatacat taagtgccaa      1560
     aattatgtat cctaatggta attgttctag cataactgct cttatagaca caggtagccc      1620
     tgttagcctc cttaaattaa tggtagtctc gtatacatct ggtattaaac cacctccctc      1680
     aggtttaatt ggtataaatg gttctatgct taacattatt gatgaatttt ttgctgattt      1740
     acaccatgtc gatcttgata caccaataaa tttgaacttt aaagtagtac ctgatagcac      1800
     aattcaaact gattgtctgt taggacggaa ttttcttgca caccctcgag ttaacttatc      1860
     agtaatagat ggacaattta ttatcacttt taaacaaact gacaacgttc catttaacga      1920
     aatattatct ttagattttg acttgaataa ttatagagaa cttgacattg acttgaatat      1980
     aaatgataaa ttaagtaatg acgttattac cagtgtaaaa cgaatttata ttaataatta      2040
     tgttaaacat tgtgcacagg atattgatga tgacctccct gaaatgcata tacagctaaa      2100
     agcacataat tctttttatt tccgtccacg acgattatca ttttatgaaa aagaaaaatt      2160
     acaaataata cttgatgaca tgctaaaaaa acacattata cgtccgagta cgtccgaata      2220
     tagtagcccg attgttcttg taaagaaaaa aaatggagat ctgcgacttt gtgtcgacta      2280
     tcgcgagctc aataaacata ttgtaaagga taggtatcca ttgccgttaa ttgacgataa      2340
     tctggattta ctccgtggga aaaaatattt tacttgtttt gatttaaaag acggatttca      2400
     tcatatttat gtagctagag attcaataaa atatacttcc tttacaactc cactaggaca      2460
     atttgaatac ttaaaattgc catttggttt agcgacgggt cctgcttgtt ttagtagatt      2520
     tattaaaaat atttttgacg aatttatcag aaaaaaagaa gtaattgttt attttgacga      2580
     cattatggtg gccactgaaa caatagacga gcatctcgat atattagcta gaatattaac      2640
     caccatgaaa aacaaaaaat tggaaattcg cttagataaa actcaatttt taaaatccga      2700
     agttatttat ttaggttacc gtgttaatgc tgacggcatt cagccaaacc caaaaaacgt      2760
     tgctattatt gataattacc ctataccgtc gaatcaaaaa gaactccata gttttatcgg      2820
     acttgcatct tacttccggc gattcatccc aaactttgcg ttattaaccc aaccattata      2880
     taaattatta aaaaaaaatg ttatttatga atttggggag gaacaactaa aatcattcga      2940
     tattattaaa tccaaactta atgctcaacc actcttatca atttatgacc ctaacgctca      3000
     aaccgaatta cattgtgacg caagtagtca agggtatggt gcaatattgc tgcaacaaca      3060
     aaatgataat aatttccacc ctgttttcta ttatagccat cgaaccactg acgtagaatc      3120
     tagataccac agttacgaac tcgaaatgtt agcgatagtt aatgctgtta aacgatttca      3180
     tatttattta caaggtgtcc actttaagat tgttactgat tgcaacagcg ttacattaac      3240
     tttacgtaaa aaagatatca acccgcgtat tgcaaggtgg gcgttatttc tacaaaatta      3300
     ttcgtatgag atagaacacc gtcctgggtc aaaaatgcaa cacgtggatg cattaagtcg      3360
     ttgtcgacac atattggtat tggaaggatg tacttttaac cagacactcg ctattaggca      3420
     aagtactgac cccgaaatta aaaatttaat taaaatactc gaaaaatcgg aacacccctt      3480
     atttgagatg cgtaatgggt tagtgtatag gaaacacggc aacagacttt tgttctatgt      3540
     tccagctggt atgtatgaac aaataatccg aacatgtcac gatgatatgt gtcacattgg      3600
     tgttaatcgt acaatagaat ttataaaaca agtttattgg ttcccgaagt tggctgaaca      3660
     tgtaaaaaaa tacataaata attgcttgaa atgtattata ttttctccca aggaagggaa      3720
     agtagaagga ttgttaaaca taatcgacaa ggacaataag ccattccaaa ctattcacat      3780
     cgatcattac ggcccgctca ataaaacaaa aaatcgtttt aggtatattc tagtcgttgt      3840
     agacgctttt agtaaatttc tgattttata tcccgttcgt tctgtcacca ctaaagagac      3900
     ctgtttaaaa ctagtacaat atttttcata ctacagtaag ccagttaaaa ttatatccga      3960
     tcgcggatcg tgctttcgat ctgacgtttt ccgagaattt tgtgaacaac atgaaattaa      4020
     acatattatg actgcagtag gatcgccgca gtcaaatggc caagtagagc gatataatcg      4080
     tagtctcacg gtaatgctat ctaagttgat gcatgaacat agccagaatt ggaacgaaca      4140
     tctaaataag atacaatttg caataaataa tactcacaat agatctatca acaatacacc      4200
     aagtaaactt ctttttggta tgaatcaagt aggaaacact aatgactata taaaaattta      4260
     tttagaaaca ttaaacgaaa atgacaacga tagagaattt gaaacaacta gacaaaacgc      4320
     atttgatatt acacgacaaa accaattaaa aaataaagcc tactatgatg ctaaacataa      4380
     acaagccaat acttattcta taggtgacta tgttatggta aaaaacgttg atacaactcc      4440
     aaatacatgt aaaaaactta taccaaaatt taagggacca tataagatac ttaaaatatt      4500
     acccaacgat agatatgttg tggctgatat tgacggatat caagtaacac aaataccctt      4560
     aaataccgtt attgctgccc gagacataaa accctgggtt acatttaaga aaaatgacta      4620
     ataattattt taatttgtaa ttgtatactt tatttattat atatataggt attgtttatt      4680
     ttattttatt tttttttttt tagtgttatg taaacatttt aattattatt ttgttattat      4740
     tataaattgt atagaataag accatgatcg aggtcgatca atattgtcag gaaggccgag      4800
     t                                                                      4801
//
ID   Gypsy3-I_Dmoj repbase;    DNA;    INV; 4453 BP.
XX
AC   scaffold_6498;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dmoj;
KW   Gypsy3-LTR_Dmoj; Gypsy3-I_Dmoj.
XX
NM   Gypsy3-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4453
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1038-1038 (2009).
XX
DR   Genome; scaffold_6498; Positions 3079539 3083991.
XX
CC   Positions [3871-4140] - Integrase core
CC   'GTTAT' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           874..4452
FT                 /product="Gypsy3-I_Dmoj_1p"
FT                 /translation="MTESVIKPFLCESLGNALLQNEWEKWLRAFMIYLEVE
FT                 DVKSVIQKRTKLLHLGGTQLQTVAYALPGAIVEFSEADQNDVFTVLVDKLT
FT                 AYFSPKQNSTFERHLFRKISPEEGETFGKFILRLRQQIQKCNFGSTKAEIE
FT                 EICFKDKIIDTWVSTELKKKLLEKEHTLNEIIEACQVDEEINKQSQLMQSK
FT                 PVPETIHKITNLKSGKIGDCGRCGRPGHREDSPMCPARQVKCSRCSRVGHF
FT                 ARRCRTNLKRPYPHSNNKEAIGNPKRKYVHRIENGNPEGNKTIQRNCFKID
FT                 SDEEYEEMMQCRIGGADVSLVIDSGSRFNIISQDDWLTLQLKKATVLNVRG
FT                 SSQNQFRGYASDQILNVICIFEAPISIKLNAEVIASFFVIEKGRQSLLGRE
FT                 TATKLNVLRVGLPINNIEFVPPFPKWKGVRVKLTIDPYVNPVKQPMRRIPV
FT                 ALEGRVNAKLEEAYKLDIIEPVEGHSPWISPMVITFKGNGDIRICLDMRQA
FT                 NRAILRENYPLPTFESFMTKLKNARIFSRLDLKDAYHQLELDESSRQITTF
FT                 ITPRGLFRYKRLMFGINAAPEIFQRRMEELLAPCNNVMNYIDDVIIFGDSK
FT                 EEHDKTLEQIRSIFKDNNVTLNNEKCSWETNRIKFLGHILTDKGIEVDPDK
FT                 TESIRLFRAPKNKEETRSFLGLVTNVGKFIADLADLTEPLRELVKKDRKFT
FT                 WGPTEENGFQKLKSVLTKIPNLSYFNPKNKTRLIADASPVALGAILLQFND
FT                 EGEPNIIAFASRSLTDVEKRYSQTEKESLALVWAVEKYYFYLIGLEFELVT
FT                 DHKQLETIFKPTSKPPARIERWLLRLQAYKFKVIYKSGKENIADSLSRLCE
FT                 QTPSSCYDIKGEHSILRIVESSAPIPISISEIAENSTIDEEIVDAMTCLQQ
FT                 GSWDSAMSKKLYPFRHELSAIGAIMLRGVRIVIPTTLRQKVLVLAHEGHPG
FT                 ESAMKRRLRSKVWWPQIDRDTEKFVKNCFDCILGSQATNPPPMKRTEFPNG
FT                 PWISVATDLLGPLPNNEYILVLIDYYSRYMEFKVLRSITSESLIGACKEIF
FT                 SRLGYPKQLRTDNGRQYISLEFKNYCKSCGIEQLKNVVFPHKLTPMFDTTE
FT                 YEVLKREGNIVQVSGGGKTLLRNANHLKRVLGETEPADVTNAKSVPIPATK
FT                 PTPQPAAQFEDQAPAEDHGNSTEGLKLKLVRKGG"
XX
SQ   Sequence 4453 BP; 1578 A; 802 C; 997 G; 1076 T; 0 other;
     ttggcgacga ggtgaaaaaa atgtaaaaat ataacaaact agataattat agttaaataa        60
     aaagaaaaag atgaaacaga acggtgaaaa agaaaaaaaa acaatataaa tgcagcgtgg       120
     ctgtgtcaat gcaattccaa tgcctggata ggatccgtta gttttcgttg tctttccctt       180
     ttcgcgtgac gttttttgtg ctcgcgagtt cgaagagaaa gaaagagaaa tattcgtaag       240
     agaaacccta aagcaatgta attacaagaa gcgtaagtgt gaatgtatac acacatacgg       300
     acgcgtacac atgaacatgc aaaataaagt aaaatgcgtg gctcacgggc aatgaaaaaa       360
     aaaaaaagaa gaaagtgaaa gagatgccga ctaattattc aattattatg aaataagaag       420
     tattatctga caaaggtcag gggaaaggaa aaaaatccga ctaaatatta gacaaatgtt       480
     taaaaagatg acgatctgac aaaggtcaga ggcaaaaggc cgattagtat taaacaaatg       540
     tttaataaat agaattatct gacaaaggtc agtggcaaaa cgccgattag tattaaacaa       600
     atgtttaata aatagaatta tctgacaaag gtcagaggcg gaatgccgat cgaatattca       660
     ataaatgttt aataaataga attatctgac aaaggtcaga ggcggaatgc cgattagata       720
     ttaaacaaaa gtttaataaa catttcttat attatctgac agtggtcagt ggcagtccgc       780
     cgatgagaaa gtcaataaaa tgcaacttgc tagacagaag catctaatta atggttgatt       840
     ttatttgcag acaaacatct atacttgatc gcaatgaccg aaagcgtcat aaaacctttc       900
     ttatgtgaaa gcttgggaaa cgcactacta cagaatgaat gggaaaaatg gttgcgagct       960
     ttcatgattt atctggaggt ggaagatgtc aaatcagtaa ttcagaaaag aacaaaattg      1020
     ttacatttag gtggtaccca attgcaaacg gttgcatacg cattgccggg tgccatagta      1080
     gaatttagcg aggccgatca aaacgatgtc tttactgttt tagtcgataa gttgacagct      1140
     tatttctccc caaagcagaa ttcgactttt gaaagacacc tttttaggaa aatctctccc      1200
     gaagaaggtg aaacatttgg aaagttcatt ttgcggttgc gtcaacaaat tcaaaaatgt      1260
     aattttggat ctacaaaggc cgaaatagaa gaaatttgtt ttaaagataa aatcatcgat      1320
     acgtgggtta gtacagagct aaaaaagaaa ctattagaaa aagaacatac tttaaacgaa      1380
     attatcgaag cctgccaagt ggacgaggaa ataaataagc agtcgcagct gatgcaatcg      1440
     aagccagtgc cagaaaccat acataaaata actaatttaa aatcggggaa gattggggat      1500
     tgtggaaggt gcggacggcc aggacacagg gaagacagtc caatgtgtcc agcacgtcaa      1560
     gttaagtgca gtcgctgctc tcgcgtaggt cattttgccc gcagatgcag aacaaacctt      1620
     aaacgcccat acccacattc gaataataaa gaagcgatag gaaatcccaa gcgcaaatat      1680
     gtgcatagaa ttgaaaacgg gaatcccgag ggaaataaga caatccaacg aaattgtttt      1740
     aagatagaca gtgacgagga gtatgaggag atgatgcaat gcagaattgg aggggcggat      1800
     gtttcactag taatcgattc gggatctcga tttaacatta tctcgcaaga cgattggtta      1860
     actcttcaat tgaaaaaggc aacagtttta aatgtccgcg gaagttcaca aaatcaattt      1920
     aggggatatg cctcagatca aattcttaac gttatttgta ttttcgaggc accaatatct      1980
     atcaagttga acgccgaggt gattgcatcc tttttcgtaa ttgaaaaagg acggcagtca      2040
     ctgctgggac gagaaacggc aacgaagttg aacgttctgc gagtgggact accgattaac      2100
     aacattgagt tcgtgccacc atttcccaag tggaaaggtg ttagagtgaa gctaaccata      2160
     gacccctacg ttaatcccgt gaaacaacca atgaggcgca ttccggtggc gctcgaaggg      2220
     agagtcaatg ccaagttaga ggaagcctac aaactggaca tcattgaacc ggtcgagggt      2280
     cacagcccgt ggatatctcc gatggtgatc acgttcaagg gtaatggtga tattcgtata      2340
     tgcttggata tgaggcaagc caaccgggcg attcttcgtg agaactaccc tttgccaaca      2400
     tttgaatctt ttatgactaa attaaaaaac gccagaatat tttcacgact ggatcttaag      2460
     gacgcgtatc atcaattgga gttggatgaa tcaagtaggc agataacgac cttcattaca      2520
     cctcggggcc tatttaggta taagcgacta atgtttggaa taaatgcggc gccggaaatc      2580
     tttcaacgac gaatggaaga actcttagca ccgtgcaaca acgtaatgaa ttatatcgac      2640
     gacgttataa tattcgggga tagcaaagaa gagcacgata aaacactgga acagattaga      2700
     agcattttta aagataataa tgtaactcta aataatgaaa aatgcagttg ggaaacaaac      2760
     agaattaaat ttttaggaca catcttaaca gacaaaggaa ttgaagtaga tcctgacaaa      2820
     acagagtcta ttagattatt tcgggcaccc aaaaataagg aggagactcg tagtttccta      2880
     ggactagtaa ccaatgtggg caagttcatc gcagacctag cagacctaac ggaaccctta      2940
     cgtgagctag taaagaaaga tcggaagttt acttggggac caactgaaga aaatgggttt      3000
     cagaaactaa agtcagtatt gactaagatc ccgaacctct catattttaa tcccaaaaat      3060
     aaaacacgat taatcgctga tgccagccct gtggctctgg gtgcgatact attacaattt      3120
     aacgatgagg gggaaccaaa cataatcgca tttgctagta gaagcttaac agatgtagaa      3180
     aagcgttact cccagacaga aaaagagagt ttagctttgg tatgggcagt agagaaatac      3240
     tatttctatt tgataggact agagtttgaa ttagtgacag atcataagca actagaaacc      3300
     atttttaagc caacatcaaa gcctccagcg cgtatcgaga gatggcttct gcgtcttcaa      3360
     gcatataaat ttaaagttat ttacaaatcg ggaaaggaaa acattgctga tagtctgtcc      3420
     cggctgtgtg agcaaacacc atccagttgc tacgatatca agggggagca cagcatattg      3480
     cgaattgttg aaagctctgc accaatacca atatctatat ctgaaattgc ggaaaacagc      3540
     acaatagatg aggaaatagt agacgcgatg acgtgccttc aacagggctc ttgggattcg      3600
     gcaatgtcga aaaaattata tccatttcga catgaactgt cggctattgg agcaattatg      3660
     cttagaggag ttcgaatcgt tatcccaaca acattgagac aaaaagtgct ggtgctggca      3720
     catgagggac atccagggga atcggccatg aagcggagat tgaggtccaa agtctggtgg      3780
     ccccaaattg acagagacac cgaaaaattc gtgaagaatt gttttgattg tattctgggg      3840
     tcccaagcaa caaatccacc accaatgaag agaacagaat ttccgaatgg gccatggatt      3900
     tcggtcgcta cagatctctt agggccgtta cccaacaatg aatatatctt agttctaata      3960
     gactattact ccagatacat ggagtttaag gttctacgct ccatcacatc tgaatcatta      4020
     attggggcgt gtaaggaaat ttttagtagg ctgggttacc cgaaacaatt gcgaactgat      4080
     aatggccgac aatatataag ccttgagttc aaaaactact gtaaatcgtg cggcatcgag      4140
     caactcaaga atgtagtttt tccccacaaa ttaacaccaa tgtttgacac tactgaatac      4200
     gaagttttaa aaagagaagg gaatatagta caagtgagtg ggggagggaa aacgctctta      4260
     aggaatgcaa atcaccttaa aagggtcctg ggtgaaacgg aaccggccga tgtcaccaac      4320
     gcgaaatcgg ttccaatacc ggccacaaaa ccaactccac agccagccgc acaattcgag      4380
     gaccaagcac cagcagagga tcacggaaac tccactgagg gactaaagct caagctcgtg      4440
     aggaaaggag gga                                                         4453
//
ID   Gypsy3-I_Dpse repbase;    DNA;    INV; 6233 BP.
XX
AC   Unknown_group_550;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dpse;
KW   Gypsy3-LTR_Dpse; Gypsy3-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6233
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1039-1039 (2009).
XX
DR   Genome; Unknown_group_550; Positions   30939   37171.
XX
CC   Positions [830-1252] - Reverse transcriptase
CC   Positions [2336-2812] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..3184
FT                 /product="Gypsy3-I_Dpse_1p"
FT                 /translation="MGTEVAESIRTRAIRAQRARDRFQRRKRRRLQVCAAV
FT                 HSAIRQDDRPFARVKMGPKTVMGLLDTGASVSLLGKGGLELIGELELKLQD
FT                 IKKFSVQTAGGTPHKILGHVSTVMTYGGQKQTMELFLCPSLKQPLYLGVDF
FT                 WRKFGLAPHIVGLERHKELAEIDAEVLTRSRPTEPHELTHTQQTRLDQVKS
FT                 NFRAFDTHGLGRTTLERHEIQLIEGAVPVKERFYPVSPAVQELLFAEVDEM
FT                 LRLGVIETSESPWSNRVTLVRKPGKNRLCLDARKLNKLTVKDAYPLQSIES
FT                 ILSRVEDTVYISSIDLKHAFWQIELEPESRTYTAFTVPGRPLYQFKSMPFG
FT                 LCNAAQRLCRLMDRVIPQRLRSHVFVYLDDLLVISRTFEEHIHLLEEVAKC
FT                 LKEANLTIGRKKSKFGYKYLKYLGYIVGDGALRTDPEKVQAITQIPMPRNV
FT                 RQIRRFLGTAGWYRRFIRNFSALSAPLTDCLKGKGQFKLTEEAGKSFEELK
FT                 KALTSAPVLHHPDFKKHFFIQCDASHVGIGAVLFQRDDEGAEHPIAFFSAK
FT                 LRGAQLNYSVPEKECLAAVRAIEKFRAYVELMPFTVITDHASLQWLMRFKA
FT                 LDGRLARWSLALQAYDFDIEHRKGKENIVADMLSRPFDVDAIDFLEFDTTA
FT                 FEDEEYRRKIESVQSDEDEFPDVKVEEGLLFKRTQFGRPELEEFSWKLWIP
FT                 EALTSTLIQQAHDSDAAMHGGIARTLGRLRQFYYWPRMTVQVKAYVADCDT
FT                 CKETKHSTQVHRPLMGAETRTERPIQKLYLDFLGPYPRTRSGNVVILIVLD
FT                 HMSRYVWLKALPKATSSAVIRFLHAEVFAQFGVPEIVHTDNGKQFVSAEFS
FT                 QFLDRRSITHLKSGNYAPQANAAERVNQTILAAIRTYASEDHTRWDEKLTE
FT                 IQCVARSAIHTGIGTSPYFVLFGQHMFTSGRDYKLARRLGALNDAQMSPLA
FT                 RSDKMEIVRDEVRGNSHEAYNRAKNRYNRKAREIRYSPGQEVYKRNFVLSK
FT                 FKDNINAKLSPKYVKCRVIRSMGNSLYELETLQGSRIGVFHAKDLKQ"
XX
SQ   Sequence 6233 BP; 1801 A; 1335 C; 1763 G; 1334 T; 0 other;
     gtacgagcag gctaggaatc ggataatggg gaccgaggtc gcggagagta tccgaacgag        60
     agcaatcaga gcacagcggg ctcgggacag gtttcagagg cgcaagagga ggcggctcca       120
     ggtgtgtgca gcagtccact cggcaattcg tcaggatgac aggccattcg cacgagtaaa       180
     gatgggcccg aagacggtga tgggactact ggatacaggg gcatcggtga gcctcctggg       240
     taaaggtggc ctggaactca taggagaatt ggagctgaaa cttcaagaca taaagaaatt       300
     ctcagtacaa acagcaggcg gcactcctca taaaatactg ggacatgtgt cgacggtaat       360
     gacgtatgga ggccagaagc agaccatgga gttgttcctg tgtccctcgc tgaagcaacc       420
     gctgtatcta ggggtcgatt tctggcggaa gtttggtctg gctccgcata tagtaggtct       480
     agaacgacac aaggaattag ccgaaattga tgctgaggtg ctgactagga gtagaccaac       540
     ggaacctcac gagttgacac acacgcagca gacgcgtttg gaccaggtga agagcaactt       600
     cagggcattc gacacgcatg gtttgggaag aacgacgctc gaaagacacg aaattcaatt       660
     aatcgaggga gccgtacccg taaaggagcg attctacccg gtatctcccg cggtgcaaga       720
     gctgttgttt gctgaggtgg acgaaatgtt gcgtctcgga gtcatcgaaa ccagcgagag       780
     cccgtggagc aaccgcgtga cgctggtacg gaagccgggg aagaaccgat tgtgtctgga       840
     tgcgcggaaa ctaaacaaat taaccgtgaa ggatgcttac ccgctgcaga gcatcgagtc       900
     aattctgagc cgcgtagagg atacggtgta catcagcagc atcgatctaa agcacgcatt       960
     ttggcagata gagctggagc ctgaaagtcg gacgtacaca gcattcacgg tgccaggcag      1020
     accactctat caatttaaat cgatgccctt cgggttgtgc aatgcagccc aacggctgtg      1080
     tcggttgatg gatcgagtaa ttccacaacg actccgaagc catgtctttg tatacttaga      1140
     cgatctacta gttatttccc ggacgtttga ggagcatata cacctgttag aggaagtggc      1200
     caagtgtctc aaggaggcaa acctgacaat tggaagaaaa aaatcgaaat tcggctataa      1260
     atatttaaag tatttagggt acatcgtagg cgacggcgca ctgaggacag atccggagaa      1320
     agtacaggcg atcacacaaa tacccatgcc aaggaacgtg agacaaatcc ggagattttt      1380
     ggggacagcg ggctggtatc ggcggtttat tcgaaatttc tcagcactct cggctcctct      1440
     gacggactgt ctgaaaggaa aagggcaatt taagctgacg gaggaggcag gaaaatcgtt      1500
     cgaggagctc aaaaaagcac ttaccagcgc ccccgtgcta catcacccag actttaagaa      1560
     gcacttcttt atccagtgtg atgcgagtca cgtcgggatt ggagcagttc tcttccagag      1620
     ggatgatgaa ggggcagagc acccgatcgc attcttttcg gcgaagctaa gaggggcaca      1680
     gctcaattat agcgtaccgg agaaggagtg tctggcggcg gtaagagcca ttgagaaatt      1740
     ccgtgcatac gtggaactga tgccattcac ggtgataaca gatcacgcga gtttgcagtg      1800
     gctcatgcgc ttcaaagcac tggatgggag actagccagg tggtcgttgg ctctccaggc      1860
     ttacgacttt gacattgagc accgtaaagg aaaggaaaac atcgtcgccg atatgctgtc      1920
     acgtcccttt gacgttgacg ctatcgactt cctggagttc gacaccaccg ccttcgaaga      1980
     tgaagaatac cgaaggaaaa tcgagtcggt ccagagcgat gaggatgagt tcccagacgt      2040
     gaaggtggag gaaggactgc tatttaagcg cacacaattt ggccggccgg aattagagga      2100
     gttttcgtgg aagctatgga tcccggaagc cctgacgagc acgctgatcc agcaggctca      2160
     cgacagcgat gcggcaatgc atggaggaat cgcgaggaca ctgggacggc tgcgacagtt      2220
     ctattattgg ccccggatga ccgtgcaggt gaaggcatat gtggctgatt gtgacacctg      2280
     caaagaaaca aaacattcaa cacaggttca ccgtccactc atgggggccg aaaccagaac      2340
     cgagaggccg attcaaaaac tgtacctgga tttcctgggt ccatatccga ggactcgaag      2400
     tggcaatgta gtcatactaa tagtcctcga tcacatgtcc agatatgtct ggttgaaggc      2460
     tttgcctaag gcgacgtcgt cggccgtgat ccgattcttg cacgcagagg tcttcgcgca      2520
     gtttggcgtg cctgaaatag tacacaccga taatggaaag cagtttgtgt cagctgaatt      2580
     ctcgcaattc ctggacagga gaagcataac gcacctgaag tcggggaact atgcaccaca      2640
     ggcgaacgcg gccgaacgag tgaatcagac aatactggcg gcgataagga catacgctag      2700
     tgaggaccac acgcgctggg acgagaagct gacggagatc cagtgcgtgg ctaggagcgc      2760
     catacacacg ggcatcggga cgtcgccata ctttgtgttg tttgggcagc acatgtttac      2820
     cagcggccga gattataaat tggcacgcag actgggcgcc ctaaatgatg cacaaatgtc      2880
     acccttggcg aggagtgaca agatggaaat agtccgagat gaggtccgag gaaactccca      2940
     tgaagcctac aacagagcga aaaacaggta caatcgaaaa gctcgagaaa ttaggtactc      3000
     accggggcag gaggtatata agcggaattt cgtgttgagc aaatttaaag acaacatcaa      3060
     cgcaaagctc agcccaaaat atgtcaagtg ccgagtgatc cgaagtatgg gcaacagtct      3120
     gtatgagctg gagacgttgc aaggctcacg tattggggtg tttcacgcaa aagatctgaa      3180
     gcagtagccc gggcatctca gtcgatggag ccagagactc gcaatcccag ggtgtgggcg      3240
     atggcctacg tttggggccc cttaattgaa aaggcccgcc tgtttggcac tcccgtttcg      3300
     gcggaggaat cctggaaaca gtagtgtggt gttatgggcg gtcttggaga gagccgataa      3360
     gtatcagggc tggagaagaa agagacagcg gcatctatag tggatcctgg gaagcagtgg      3420
     cagagttgcg tgggagaaaa ggaaacggtg cgaggaggag gaaaaagaaa aagaagagtt      3480
     tccggtggag aatagtggag gccgcacgtg ccctgaaaga aaaaaaagga aacaaaattg      3540
     gtgatcgtgg agacgacgat cccaccaaga catcagcggc aggcatcaac atcagcagaa      3600
     gcggcggacc gcggcagcag cagcccggta ctggccaggc cggaaaactg gtgcgagaac      3660
     cggcagcgga gcaccgacac caaggaaccg tcagcggagc accggcacca aggaaccgtc      3720
     agcggagcac cggcaccaag gaaccgtcag cggagcaccg actggagaca cgtttctgtc      3780
     cccacacacc aacccccccg gggaaagaat ccagacttcg aagcagaaat aaacccacac      3840
     gaatcaatgt cacacacctt catccacaca catcacaccc aacccacgca tgtataccct      3900
     cattcataac acatcacata acatcaccac atttcacaca tctacacccg tccgacccac      3960
     aattaaacaa tatatcacga tcatataaaa agaacaccac gattaaacgt aaacatcagc      4020
     aagcatcagg aagccacaac ttctagcaaa gggggctgcc aattcggccg aaatagggtt      4080
     tctttttttt ttgttagtat tttttgtgtc agtatttgtt tccgttatat aaacctagat      4140
     tatgaattaa tgttcaagga gataaataag aaaatataat ggatataaaa atgaaaattt      4200
     gaacagagtc atgagtgaat agaaaacggt agttgggtgg gacgagagcg agaagaagag      4260
     tgggaccctg aatatgagaa gggagcgctc atggaaggtg gcgctcatgg aagggtggga      4320
     ccctgctagg gataacgaaa ccaactatcc ccgctgacga aagtgccaac gaagacaagt      4380
     ctgtcctata aattagattt gttttttttg tatgtttttt gtttgttttt gttttgttca      4440
     atccgtcccc tgacttatcg ggtcggaaac acccctgact tccccgtgag ctagctggga      4500
     acgataggcc agggtggcaa agaggcggat cataactaat ggcgcccaat ggaaatagaa      4560
     gggatcgatt tgaaacacga gtcttaaaga cccggtgtaa aatggaaccc tggtagaacg      4620
     aaactcagcc ggtccgcgag ccgggaataa atcctagccg tcgtagccgc tgagaggagt      4680
     agaagtgagg aaaatggaca tggtagttat gtatcggagg tagaagggaa ggaagtgtgg      4740
     gtcccgagtt gtggtccagg tattaccagg tggtagtagc ctcgttgtcc gactcgtgga      4800
     gcccgctgtc cggatctgaa aagaggaaga ggtgccgggg gatctgtcga gtcgtggtcc      4860
     gggttatgtc cagaggcatt aacgtcgttg tccgattctg ggggatccac ggtgatctga      4920
     gggaggaaac agcaaaggga gttggcactc aaaaaaagta agcgaaggta tatagcaagg      4980
     ggaaaagaag ggggtccgct cacctgcaaa acaataaatg cagttgtctc tcgtcccacc      5040
     aaacaaatta aaggtgaatt tttgtctcaa gcagtttggg aattatatgt ttttttttgt      5100
     tagtgattta gcagactatt ggaaagccga agcaagaaaa cccaaaggga aatcatcttt      5160
     ttttttgagg tctaacaatc ctcgctagca ttgtttggaa gcaattttag aagtaggcat      5220
     taggcaagtc atcggaaaaa gagtttttgt ttgggagagg aagtatttag ttatttagtg      5280
     ttgtatttaa ttaggcgatt aatggtagat gtacataggt gtttatttat ttgattgaat      5340
     caatttagat atttagattt atcaatttat tgatttaaat taaccgattt acgtatttga      5400
     atttatttat ttggttatct aaacattgaa ttaattattc gcttatttat ttattgcact      5460
     atttatttgt tcaacatttg ttcaatttat ttgttttctc gttatgattg aaagttttaa      5520
     agattattta gccaggaact aggtgtttag aggagtaggg tagtcggata ataaacaatc      5580
     caatttattt atcgccaaga tagttaagta aatagagaat agacaaagga aaggagtacg      5640
     ttacgaaaat tggttgatga gtgacccgga gatttttaaa gggtcgggaa agacaaggcg      5700
     tagccctgag gcacagcgca ggtaccagcc gtacaacatg ccgacgactc ggtcccagga      5760
     cggtaaagcc ggcagtaggc cggaagggcc gtcgcaagtg gcggaaaaca tacatgcggg      5820
     gttgtaccag gaggacccag aggccggagc ggtaggaggt caacagcgaa cccgtaagga      5880
     cctggtgtta ccgtccgagt taagctcagc cgtgaacgca gcgttagccc aagcacagga      5940
     gacctaccga gcttcgctcg ggcagcaaat ggaagcgctg agatcgtcaa tgcaagcgga      6000
     catgctggag ttcatgcgag agatcaacgc tgtgatgggt tcgttaaaag cggagcgaac      6060
     ggcgagtgat gcgaatggaa ggaatcgggg atcgaatgca accagtctgg gaggaggtca      6120
     accggaagca cccgcgaacc agcaagcaca tccaacgcac ttgtttgtgg acaaccgaac      6180
     attggaggcc gatcagagga cccaagccga tcagagaccc gtggaggagt ggc             6233
//
ID   Gypsy3-I_Dya repbase;    DNA;    INV; 2305 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dya;
KW   Gypsy3-LTR_Dya; Gypsy3-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1040-1040 (2009).
XX
DR   Genome; chrU; Positions 5680974 5678670.
XX
CC   'CTAC' target site duplication
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..2131
FT                 /product="Gypsy3-I_Dya_1p"
FT                 /translation="MESPRSMIEDAAAGVVPPSSEHCTNAESMNVHDDARP
FT                 STSTNHRDSELAREEHFPEVSTQFDAMQRQLRLLQLENEMLKLESARRHNA
FT                 ATSDQNSAATSGHNKATPLIRSSVAKPNQHKDATQDQEVAGGDARSEEAFV
FT                 NKQTLLAMAKEMIPIFDGASNNKLNVSTWVAQLNAVSKMFKLSDDVIRMLV
FT                 MSKLKDHAQIWLHSSERLLTLPVQELLFQLGEAFHGKESKIISRRKFQERK
FT                 WKPSEDFSTYFKEKTLLATQIRIDDEELIDNIIEWIPDSLLRQQAHMHCFN
FT                 SSAQMLHAFAKVSLRKPLLSPAGRVKVSFDKEPGSAPPKRCFNCNAVGHFA
FT                 ADCRKPKREYGACYACGSKDHLVYNCTERKFVSDNEYVRPFKIYFSSKPNE
FT                 CLFLECLIDSGSPISFIKKSYVEKILKKEDITLNGKILKNYFGLNGSPLDI
FT                 IGKISCFVIINKEILNFELLIVTDRSMAYGTVLGRDFMKISNFKIVREKDS
FT                 SNDRHCENDCLNNRNFENFIANDRHCENDRSNDRNVENFIANDRYCENYDS
FT                 NSGNAVLNNENSEDNGLNDRKSENDVANVKNYGNKCSININNGNESKTSSP
FT                 YDGLEILSIEYPDPIE"
XX
SQ   Sequence 2305 BP; 767 A; 436 C; 514 G; 588 T; 0 other;
     aattcagaag tgggattact gtgaattttt ttttcacaaa aaactcaacc tacgaagcaa        60
     agtaaaaaca atatctttaa atataatcaa atggaaacca tcggtgcgga cgattataca       120
     gcagcagaac tgcgcaattg gcggtaacaa ggccacgctt gcggcgcgat tgaacggtgt       180
     gcccccagaa gcccgaggag tttgcccggt gattggcgaa ttagaaggcg aaatcgctaa       240
     caatgatttg gagcacgaaa tcgtcggaga gtcagcacca gaggtcgaca tggaaagccc       300
     aaggagcatg atcgaggacg ccgccgctgg agtggtgccg ccaagcagcg aacactgcac       360
     caatgctgaa agcatgaatg ttcatgacga cgccaggccc tcaacatcta ccaatcatcg       420
     cgattcggag ttggcacgcg aggaacattt tccagaagtt tctacgcagt tcgacgccat       480
     gcagcgtcaa ctaaggctgc tccaattgga aaacgaaatg ttgaaattgg aatctgctcg       540
     acgccataac gctgccacat cggatcaaaa cagcgctgcc acatcgggtc ataacaaggc       600
     taccccacta attcgaagca gtgttgccaa accaaatcaa cacaaggatg ccactcaaga       660
     tcaagaagtc gctggcggag atgccagatc ggaggaagca tttgtaaata aacaaacatt       720
     gctagcaatg gccaaggaaa tgattccgat attcgacggt gcttctaaca acaaactcaa       780
     tgttagcaca tgggtcgccc agctcaacgc ggtctcaaaa atgtttaagc taagcgacga       840
     tgtaattcgc atgctagtga tgtccaaatt aaaggaccat gctcaaattt ggttgcactc       900
     ttcggaacgt ttgctgactt tgccggttca agaacttcta tttcaacttg gtgaagcttt       960
     ccacggtaag gagagcaaaa taatatctcg acgcaagttt caagagcgca agtggaaacc      1020
     gtcggaagat ttctccacat acttcaaaga aaaaacgctg ttggctacac agattcgaat      1080
     agacgatgag gagctaatcg acaacatcat tgaatggatt cccgactccc ttctacgaca      1140
     acaggcacac atgcactgtt ttaattcgtc tgcgcagatg ttgcacgcat ttgccaaggt      1200
     ctcgttacgt aaaccgctac tttctccggc tggacgtgtt aaggtttcgt tcgataagga      1260
     acctggttcg gcgcctccaa aaaggtgctt caattgcaat gctgttgggc atttcgccgc      1320
     cgactgccgc aagcccaagc gcgagtatgg agcctgctac gcatgtggca gtaaggatca      1380
     tctggtgtac aactgcactg agaggaagtt cgtatccgac aacgaatatg taagaccgtt      1440
     taagatttat tttagttcaa aacctaatga atgcctgttt ttagaatgcc taatcgattc      1500
     tggaagtcca attagtttca taaagaagtc atacgtcgaa aaaattttga aaaaggaaga      1560
     tattacgtta aatggaaaga ttcttaaaaa ttattttggc ttaaacggta gccctttaga      1620
     tataattgga aaaatatcat gtttcgttat tatcaataaa gaaattctaa attttgagtt      1680
     actaattgtg acagacagat cgatggcata tggaacagtt ttgggaagag attttatgaa      1740
     aattagtaat tttaagattg ttagggaaaa agatagttca aatgatagac attgcgaaaa      1800
     tgattgttta aataatagaa actttgaaaa ttttattgca aatgatagac attgtgaaaa      1860
     tgatcgttca aatgatagaa atgttgaaaa ttttattgca aacgatagat attgtgaaaa      1920
     ttatgattca aattccggaa atgctgtttt aaataatgaa aattctgaag ataatggttt      1980
     aaatgataga aaatctgaaa atgacgtggc taatgtcaaa aattatggaa ataagtgttc      2040
     aattaatata aataatggaa atgagagcaa aacaagtagt ccttatgacg gattagaaat      2100
     actatcaatt gaataccccg atccaataga ataacaaaag ttttgcgtaa cgataggtat      2160
     gtcgtggagg acgttgaagg ttttcaacag tatagacttc catacaaggg agtttgggca      2220
     gtagcaaata tgcgcccatg gataaacaaa agtaaaagtt aacatgtttg tagagatcag      2280
     gagctctccg gtcaggatgg ccgat                                            2305
//
ID   GYPSY3-LTR_AG repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   02-MAY-2003 (Rel. 8.04, Created)
DT   02-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY3-LTR_AG is an LTR of the GYPSY3_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD;
KW   GYPSY3-I_AG; GYPSY3-LTR_AG; GYPSY3_AG; Gyspy clade;
KW   RETRO56_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-141
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO56_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 12-12 (2002).
XX
RN   [2]
RP   1-141
RA   Pavlicek A., Kapitonov V.V., Drazkiewicz A. and Jurka J.;
RT   "GYPSY3_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Direct Submission to Repbase Update (30-APR-2003).
XX
DR   [2] (Consensus)
XX
CC   GYPSY3-LTR is a long terminal repeat of GYPSY3_AG (it internal
CC   portion is deposited as GYPSY3-I_AG). LTRs appear to be flanked
CC   by 5bp long direct repeats.
XX
SQ   Sequence 141 BP; 49 A; 27 C; 26 G; 39 T; 0 other;
     tgttgcatag taacacgcat aacgcagtaa cattgcaaga ctcgatcaga gtacacattg        60
     agtgaataaa gacgattcca ttctgaacta aggaataaag cagttgtgtt tttctcaaga       120
     tatattccct gcgacatatc a                                                 141
//
ID   Gypsy3-LTR_AP repbase;    DNA;    INV; 105 BP.
XX
AC   Contig4708;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3AP;
KW   Gypsy3-I_AP; Gypsy3-LTR_AP.
XX
NM   Gypsy3-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-105
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 442-442 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 105 BP; 30 A; 16 C; 11 G; 48 T; 0 other;
     tgtagtggga tattccccga acggccacta ttattattat tattattatt attattatta        60
     ttattattat tatcatcatt attatttatt tacgcctagc cgaca                       105
//
ID   Gypsy3-LTR_Dmoj repbase;    DNA;    INV; 217 BP.
XX
AC   scaffold_6498;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dmoj;
KW   Gypsy3-LTR_Dmoj; Gypsy3-I_Dmoj.
XX
NM   Gypsy3-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-217
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1041-1041 (2009).
XX
DR   Genome; scaffold_6498; Positions 3079322 3079538.
XX
SQ   Sequence 217 BP; 62 A; 47 C; 46 G; 62 T; 0 other;
     tgtgggaacc ggcaccgaga tgctaagcag aaagcgacgc ctacaaagca gagcccgtta        60
     acactctctc ttgataatct cttgttactt ctctccccat tcaagctcta gcgtttagta       120
     cttttgtgac aagctaagcg gccgcattga agcggaacaa tatatgtatc attactttgg       180
     aaataaagtg ttttatgtaa agtagcgggt tattaca                                217
//
ID   Gypsy3-LTR_Dpse repbase;    DNA;    INV; 527 BP.
XX
AC   Unknown_group_550;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dpse;
KW   Gypsy3-I_Dpse; Gypsy3-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-527
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1042-1042 (2009).
XX
DR   Genome; Unknown_group_550; Positions   30412   30938.
XX
SQ   Sequence 527 BP; 148 A; 126 C; 162 G; 91 T; 0 other;
     tgcggacgcc gagaaactgc tggcgacgcg atggacaagg agcggtccag accttggggg        60
     tggtaggcgc agggaagatc acaaagtgca tgaattggat gcgaacaccc acgacccgga       120
     ggaacagacc gaggcattgg atgctgtata taggacgagg gaatccggag gcgatcgcgc       180
     ccagctgagg tgctggaact gcgctcagcc ggggcataca tattttgagt gtgagtcggc       240
     cgtgcgtaac ctgttctgct acaagtgcgg gctggccggg gtcatcctcc ctaaatgccc       300
     taaatgtcga ccgggaaacg cgaaaaggag cacgacgcaa ttggaggagt cgagctccac       360
     gtcgccgcga agcagccagt agataggtcc tccaacgtta aattagatac ccctaaggaa       420
     agaagtagca ataagaatat ttacactacc atatataagg ttaaccaagc tgtattaccc       480
     gaagctagat ggtccgagcg caagccgata aaggaaaggc agcgtca                     527
//
ID   Gypsy3-LTR_Dya repbase;    DNA;    INV; 264 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_Dya;
KW   Gypsy3-I_Dya; Gypsy3-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-264
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1043-1043 (2009).
XX
DR   Genome; chrU; Positions 5678669 5678406.
XX
SQ   Sequence 264 BP; 90 A; 59 C; 51 G; 64 T; 0 other;
     tgtagcaagc aggcacacta ccgtaacata cacacagtga ttgtacatac agtcctagat        60
     atacatactc ttagttttaa gtacaatttt acgctaatgt taagatcgtg cttacggact       120
     actttgtgcg tcccgttcgc acgatcagca actgacacac caatacatac atgtaatagg       180
     ctaagaagga acggaacgaa gaaataaaga acacttcgtt tgtgacaaga agagagaacg       240
     gccgcatttg aatcgcctcc taca                                              264
//
ID   Gypsy3-NVi_I repbase;    DNA;    INV; 3345 BP.
XX
AC   AAZX01003557;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-NVi;
KW   Gypsy3-NVi_I; Gypsy3-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3345
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1120-1120 (2007).
XX
DR   Genome; AAZX01003557; Positions    9787   13131.
XX
CC   Positions [2336-2842] - Integrase core
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1649..3346
FT                 /product="Gypsy3-NVi_I_1p"
FT                 /translation="MHEIHTTGPPVHSRPRSLYGERLEAAKDYFNKLIQRG
FT                 IIRPGSGQWSSPLHMVPKPKGGFRAAGDYRKLIASTIPDRYGLPRIEDLLQ
FT                 DCRDKGEDNVVVDALSRPCSTISMPSLLDPATIAAAQDDGEELPHLLKTGI
FT                 LDLQQLAVQQHNIYCNVLKNVVRPYLPGKLRRLAFDTVHRPAHPSVRATVR
FT                 MLADKFVWPGMRKDANSWAQSYVSCQRAKVQRHNREAIQSFEVPDNRFEHV
FT                 HMDIIVMPFVGDLRYCLTMIDRFSRWPVVVPIADIRAETIARSFFEHWVAY
FT                 YGTPITITTDQGTQFESALFALAQMIGSRRIHTTPYHPQANRLIERFHRTL
FT                 KAALMCEEHTPWPERLPIVMLGLRSCLKEDLQASPAEMLYGTTLRIPGDFF
FT                 TSDSAPADPGTFAGKLRALFRDIKPVPAAHHGNYKPFKLKRLATCTHVYQR
FT                 VDAVRKPLVPPYVGPFKVIRTTSDKVFIILVNGQEKAVTTDALIPAHQDIS
FT                 DAPSTTPMEPAATSPPIDTPEAKEKSGDSTPSDAQSKEAEEEDFSVLEHPG
FT                 AKKKVSFASQGKLTKGGVP"
XX
SQ   Sequence 3345 BP; 797 A; 1043 C; 898 G; 607 T; 0 other;
     agaccccgac atgcgacgca tcttacctca cagtatccgc cacgtgatct caagaaaaga        60
     ctctgtaaat aattagtgtt ttaataaacg tgaaactcga actataagtg agaaagtgag       120
     tagaatttct taccgcgaaa tcccagacct cgctaaattg gtgaccccga cgtgatcgcg       180
     gcggatttcg ggcgagtgac agacaaacac gtgcaaaagg tgaaagtgtc aattgtggac       240
     ttggacctga aatgttggtg ccacggagac tccaccccga gagcccggta ttacgacccg       300
     tgtactacgc tccagagcta aggagtttcg cacgagcctc gacgcagaac aaagcgacga       360
     caaaaacgag gtcgacatga cgagtcaggc aggagagagc ggtgcaggtg gcggccttgg       420
     caacattccc ggaggcgccg gcgataacag caacgcaaca ggtggtgccg gtaacagcag       480
     cggaagcgcg ggaataggcg acgctaacct cgctgcacta cgacatgtgg cgaaacgaac       540
     gccgccattt tggaagcatt gtcccgatgc ttggttcttg cagctcgaga gaatttttgc       600
     gtgcaatcag attcaatctg atctgcaccg ctacaacacc ctcgtatcca gcctcgacca       660
     ggagaccgtc caggaaaaac gtcgtaaaaa cgctgcgcat tctacgcaac agcccgttgg       720
     acgagttcgc agaggtggcc gacggcatcg tcgagactgg gcccgccacc ttcgctgtac       780
     atccaggcaa caggaaggca ttttcaccag ctcgggctcc agcatttgta cctgaggcgg       840
     ccccgccatc ctcgtcagct gactctcggc tcctcgctga attcgccgcc atccgcatct       900
     caatggctaa gatagcttct gcaacagcaa aaaccctcaa ggcggtccag aggatgagca       960
     gcagcagcgg tcatcaagga ggacagcatc agagtaacca gcatggtgga cgtcagagcc      1020
     gctcaaggtc acgggccaag tctccgacag gcaaccccag ccactgctac taccatcagc      1080
     gttttggaca tccaaacaac cagggaaact aggccggctg ccaggagctt tggcggtctc      1140
     cgacagccca gcttctgctg aaaaccgcct ccacgtcctt gacaggacga ccaacaccag      1200
     cttcctagtg gactccggct ctgtgctgtc gcttctgcct cggtcagcgg tgcgagatcg      1260
     aaagctcgcc gtccagccac ttcgccttgt ggcggcaaac ggcaccccgg tccacacctt      1320
     cggcaggcgc ctggtgacgc tcaacctcgg actccggcga gccatccctt ggcctttcgt      1380
     cgtggcggac gttccggttg cgatcctggg ggcggacttc cttcaccact cagggtatct      1440
     ggtggacctc cagcatcatc gactcatcga ctcgaccacg acgctttcca ccccggcgga      1500
     gatccgggcg acggccatcc acggtgtctc ggtggttgct ggctcaagca ccgccatctc      1560
     ccaggacgaa taccagcggc tcctagctga gttcactgac ctggcgcagc cgaacgaggg      1620
     gagagccacg ctcaacggcg aggtggtcat gcacgagatt cacaccacgg gcccgccggt      1680
     ccactctcga cccaggtcgc tctacggcga gcgtctggag gcagccaagg actacttcaa      1740
     caagctgatc caacgaggca tcatccgtcc aggatcaggg cagtggtcca gcccactcca      1800
     catggtgcct aaaccgaagg gaggattccg cgctgcgggc gattatcgga agctgatcgc      1860
     ttcaacgatc ccagaccgct acggattgcc gaggatagag gacctccttc aggactgtcg      1920
     agacaagggt gaggacaacg tggtggttga cgcgctttcg aggccatgct caaccatcag      1980
     catgccgtcg ctcctcgacc cagctaccat cgcagcagct caggacgacg gcgaggagct      2040
     gccgcatctc ctgaagaccg gcatcctcga tctacagcaa ctcgccgtcc agcagcacaa      2100
     catctactgc aacgtcctga aaaacgtagt ccgcccgtac ctgcctggca agctccgtcg      2160
     gctagccttc gacaccgttc accgtccagc gcatcccagt gtacgagcca cggtgcgaat      2220
     gctggcagac aaattcgttt ggcctggaat gcgcaaggac gccaactcct gggcgcagtc      2280
     ctacgtctct tgtcaacgcg ctaaggtaca gcgacacaac agggaagcca tccaatcctt      2340
     cgaggtgcca gataataggt ttgaacacgt ccacatggac atcatcgtga tgcctttcgt      2400
     cggagacctc cgatactgtc tcacgatgat agacagattc tccaggtggc cggtggtggt      2460
     gcctatcgca gatatccgag cagagaccat cgcaaggagc ttcttcgagc actgggtggc      2520
     ttactacggc actccaatca ccataaccac cgaccagggc acccagttcg agtcagcgtt      2580
     gttcgccttg gcccagatga taggctcgcg caggatacac accacgccgt accatccaca      2640
     ggcaaacagg ctcatcgagc ggttccacag gacgctcaag gctgctctga tgtgcgagga      2700
     gcacacgcca tggccagaga ggcttccaat tgtaatgctg ggactcagat catgcttaaa      2760
     agaagatctc caggcgtcac cagcagagat gctttacggg accactctac gcatccctgg      2820
     ggactttttc acctccgaca gtgctccagc agacccgggt acctttgcag ggaagctgag      2880
     agcactcttc agggatatca aaccggtacc agcagctcac cacggtaact acaagccgtt      2940
     caaactcaag cggctcgcta catgtacaca cgtctaccaa cgtgtcgacg cggtgaggaa      3000
     gccactggtc ccaccgtacg tcggcccctt caaggtcatc aggacgacca gcgacaaggt      3060
     cttcatcatc ctggtcaacg gtcaggagaa ggccgtcaca actgacgccc ttattccggc      3120
     ccaccaggac atctccgatg caccatcgac cactccgatg gaaccagcgg caacctcgcc      3180
     gcccatcgac acgccagagg ccaaagagaa gtcaggagac tccactccgt ccgacgccca      3240
     gtccaaggaa gcagaagaag aagatttttc tgttttagag caccctggcg ccaagaagaa      3300
     ggtgtcgttc gcttcccagg gcaagctcac taagggggga gtacc                      3345
//
ID   Gypsy3-NVi_LTR repbase;    DNA;    INV; 148 BP.
XX
AC   AAZX01003557;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-NVi;
KW   Gypsy3-NVi_I; Gypsy3-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-148
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1121-1121 (2007).
XX
DR   Genome; AAZX01003557; Positions    9639    9786.
XX
SQ   Sequence 148 BP; 22 A; 52 C; 43 G; 31 T; 0 other;
     tgtggcggtt gctccacccg gacagttggc gccatctcgc ggtcgccgca aacaatgcct        60
     gaagcctcgg gacgtctact agagggctct gtcttccgca gggtgcttcc cgccagagtc       120
     gagcacgccg ctcgctctct tatcgcca                                          148
//
ID   GYPSY32-I_AG repbase;    DNA;    INV; 4536 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY32-I_AG is an internal portion of retrotransposon GYPSY32_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY32-I_AG; GYPSY32-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY32_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4536
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY32_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 56-56 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY32_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase, is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY33_AG, GYPSY34_AG,
CC   GYPSY35_AG,
CC   GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY32-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 1442-aa GYPSY32_AGp gag-pol like
CC   polyprotein
CC   (pos. 129-4454).
CC   The sequence of the LTRs flanking GYPSY32-I_AG is deposited as
CC   GYPSY32-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..4454
FT                 /product="GYPSY32_AGp"
FT                 /translation="MPTKDEMLCALESKGIEVPVTASIPQIRNMFSENVLQ
FT                 LTSAEAVATTSRGEICPPSSTAIAATTTTAVATVAANCASTILKGDNDTDS
FT                 ATILSASVACAPIALNNENSSSLPANADNENELNEMRRRLELLELRQRVQT
FT                 LEYQSGKFSASDLKLDGIIEPFTGDDASKCIIEWLDELDHHFSLCRVQDSD
FT                 KFFYVYRLLKGSAAMVAKASRASTLQQLKDELVANFYVTPTTEGVYRQLRN
FT                 RRLSPHETALRYVLDMQRIASRASVPEPELINIIFEGLGSPSHTAGMRFLV
FT                 EKVEDLKPLLNKFEAIRPRYVAKSSETPFPSDRKRVTTNRGTTPTTVRCFN
FT                 CSQFGHHQSACTRQRRPPGACFRCFQLGHNYKSCPNAETSAAAYPDAANRV
FT                 DIDNAETLPLNELHEVSASFLKSGKIIMTVKEYSLFDTGSPVSFINEKIVP
FT                 LCLLSDPVPSNYKGLGNSHLYTRGQIHCRIQFRETILHHMFVILPHTSMAW
FT                 PIIIGKDLLPALNVHLMYFKDHIPLKRTCIIPTKTIEEQKRNVSKSGILDN
FT                 AFSEICAIDTFESEFKLDTGPSLSLEETSTILSIFENSYINNTSKNNELSN
FT                 HCMKINLTNQTPIFTKPRRLSYGERNQVKEIVSNLLKEKVIRPSNSPYASA
FT                 LVLVRKKNGEVRMCVDYRPLNKITVRDNYPLPLIETCLEHLSNKKFFSLLD
FT                 LKSGFHQIRMEESSIPYTSFVTPDGQYEYTKMPFGLKNAPSEFQRFINSIL
FT                 REFIDDEKVVVYLDDIIIASLDFQSHLKTLQAVLERIKQCGLELRVDKCKF
FT                 AHQELDYLGYKANAFGIRPSDRHIQAIRNYPMPINVKQLRRCLGLFSYFRR
FT                 FVPSFSCIAKPLTNLLQKDELFNFDTSCCEAFETLREKLTQSPILAIFDPK
FT                 KETELHCDASSFGFGAVLLQKQEDNKLHPVAYFSKTTSKEEAKLHSYELET
FT                 LSVIYALKRFHVYVHGLPLKIFTDCNSLVETLKNRNASAKIARWSLFLENY
FT                 DYTIHYRSGTSMAHVDALSRTEAVGAISDLDLDFQLQIAQSQDPLINTLRQ
FT                 KLEAGSVQGFILQDGLVYRQSSTNHLQLYVPREMVDNIIRHNHEKIGHLAI
FT                 SKTCQTISQHYWFPHMKPRVENFIKNCLKCIVYSAPPRTNNRNMYSIPKTP
FT                 VPFDTLHIDHLGPLPNITSRKKYILVVIDAFTKFTKLYATATTNTNEVCEA
FT                 LTQYMSYYSRPKRIISDRATCFTSTAFKEFVDSNDITHVLNATGSPQANGQ
FT                 VERVNRVLRPILSKLCNSSDHSDWSSHLRSAEHALNNTVHSSTNFLPSILL
FT                 FGIEQRGQILDELHEFLNDKHVTTNRDLNLLRSEALSNIEYSQYRNEQYVA
FT                 NRTKPAPSFSEGDLVAIKYTDSTNANKKLVCKFRGPYIVHKVLPHDRYVIR
FT                 DVDGFQITQMPYDGVLEVDKLRKWSNNI"
XX
SQ   Sequence 4536 BP; 1369 A; 1036 C; 846 G; 1285 T; 0 other;
     tctcagaagt gggatacgtc ctatcgacta cacctgtttt gctgtttgca ccctcacgat        60
     aaaaagtata gcgaaaagtg tgtgcgtgtg tatgtgtgtg cgaggtgacg ccacgatccg       120
     ccatcgcgat gcctacaaaa gatgagatgt tgtgtgctct tgaaagtaag ggcatagaag       180
     tccccgttac ggcttctatt ccacaaattc ggaatatgtt ttctgaaaac gttctacaac       240
     taacatcagc ggaagcagtc gcaacaacct cacgaggtga gatatgcccc ccgtcgagca       300
     ccgccatagc cgccaccacc accaccgccg tagctaccgt cgcggcaaat tgcgcatcca       360
     ccattttgaa aggcgacaac gataccgatt ctgccaccat tttgagtgct tccgtagctt       420
     gtgctcccat cgcgcttaac aatgagaatt cttcttcgct tcctgctaac gccgacaacg       480
     aaaatgaact caacgaaatg cgacgacgct tggaactttt agagcttcgc caaagggtcc       540
     aaacccttga atatcaatcg ggaaaatttt cggcaagcga tttgaagcta gatggaatta       600
     ttgagccttt tactggagac gatgcatcaa agtgcatcat tgaatggctt gacgagctag       660
     atcatcactt ttctctgtgc cgcgtccaag attctgataa attcttctat gtgtaccgtt       720
     tactgaaagg atctgctgct atggtcgcta aagcctctcg tgcttcaaca ctgcaacaat       780
     taaaagacga gctggttgca aacttttatg tgacacccac gaccgaaggc gtctaccgac       840
     agctgcgtaa ccgtcgtctc tcgccccatg agacagccct gcgttacgta ttagatatgc       900
     agcgaatcgc cagtcgcgca tccgttcctg agcctgaatt aattaacatc atcttcgaag       960
     ggcttggcag tccgtcccac accgctggaa tgcgttttct ggtcgaaaaa gtggaggatt      1020
     tgaagccact tttgaacaag ttcgaggcga ttcgaccacg atatgttgct aaatcatccg      1080
     agacgccctt tcccagtgat cgcaaacggg ttacaactaa tcggggaaca acaccaacaa      1140
     ctgtccgttg tttcaattgc tctcagtttg gtcatcatca gagtgcttgt acacgccaac      1200
     gccgcccacc aggagcttgt ttccgttgct tccagctggg acacaactat aaaagctgtc      1260
     cgaatgctga aaccagcgct gctgcttatc cggatgcggc caatcgcgtt gatatcgata      1320
     atgcagaaac actgccatta aatgaattgc acgaggtgag tgcttctttt cttaagtcag      1380
     ggaaaataat catgacagtc aaagaatatt ccttatttga tacaggtagc ccagtaagct      1440
     ttattaatga gaagatcgta cctttatgcc tgttatctga tccagttcct tccaactaca      1500
     aaggtttagg aaattcgcat ctttatactc gtggccaaat acactgccga attcaattca      1560
     gggagacgat tctccatcac atgtttgtta tactgccaca tacatctatg gcatggccaa      1620
     taatcatagg gaaggatcta cttccagcac ttaatgttca tcttatgtat ttcaaagatc      1680
     acatcccgct taaacgaact tgcattatcc ctacaaaaac tatagaggaa caaaaaagga      1740
     acgttagcaa atctggtata ttagataatg cctttagtga aatctgtgct attgatacat      1800
     ttgaatctga atttaaactt gatactggcc cttctctatc cctcgaagag acttcaacca      1860
     ttttgtctat ttttgaaaat tcttatataa ataatacttc taaaaataat gaactatcaa      1920
     atcactgtat gaaaattaat ctaactaatc aaactcctat tttcacaaaa cctcggagat      1980
     tatcatacgg ggaacgtaat caagtgaagg aaatcgtttc aaacttactt aaagaaaagg      2040
     ttataagacc tagcaattct ccttatgctt cggctctggt actcgtgcga aagaagaatg      2100
     gagaggttcg aatgtgcgtg gactatcgac cgttaaacaa aattactgtg agggataatt      2160
     acccactacc gttgattgaa acatgtttag agcatcttag caacaaaaag tttttcagtt      2220
     tactagatct caaaagtggc ttccaccaga tacggatgga agaatcttcc attccctaca      2280
     cttctttcgt cacccctgat ggtcagtacg agtacaccaa aatgcccttc ggtcttaaga      2340
     atgccccctc tgagttccag agatttatta actccattct tcgtgaattt atcgatgatg      2400
     aaaaagtggt cgtctacttg gacgacatta taatagcctc cttggacttt cagtctcact      2460
     taaaaaccct tcaggcagtt ctagagagaa tcaaacaatg tggccttgag cttcgcgttg      2520
     acaagtgtaa atttgcgcat caagaacttg actatctagg atacaaagca aatgctttcg      2580
     gtattcgacc tagtgatcgg cacattcaag ccattagaaa ttatccgatg cctattaatg      2640
     ttaaacaact cagaagatgt ttaggactct tctcttattt tcgacgcttt gtcccttcgt      2700
     tttcttgcat tgctaaacca ctcactaact tacttcaaaa agatgaatta tttaactttg      2760
     atacaagctg ttgtgaagca tttgaaacat tgcgagagaa acttactcaa tcccctatcc      2820
     ttgctatttt tgatcccaaa aaggagactg agcttcattg cgatgccagc tcgttcggct      2880
     ttggtgctgt attattacag aaacaagaag ataataaact tcatcctgta gcttatttct      2940
     cgaagacaac atcaaaagaa gaggcaaagt tgcatagcta cgagctagag acgctttccg      3000
     ttatctatgc acttaaaaga ttccatgtat acgtacatgg gttgccttta aaaatcttta      3060
     ctgactgcaa ttcattggtc gaaaccttaa aaaacaggaa tgcatcggct aaaatagcaa      3120
     gatggtcttt gtttttagaa aactatgatt acacaattca ttaccgatct ggaacttcta      3180
     tggctcatgt agacgctcta agccgaactg aagccgttgg agcaatcagc gacttagatc      3240
     ttgattttca acttcagatt gctcaatccc aagacccctt aataaatacc ctacgacaaa      3300
     aacttgaagc tggttctgtt caaggattta tcctccaaga tggtttggta tatcgtcagt      3360
     cttccacaaa tcatcttcaa ttatatgtgc cacgagaaat ggtagacaat attatccgac      3420
     acaatcacga aaagattggt catcttgcca tcagcaaaac ttgccaaacc attagccaac      3480
     actattggtt ccctcatatg aaaccaagag ttgagaactt cattaaaaat tgtttaaaat      3540
     gcatcgtcta ttcagcacct ccaagaacta acaaccgaaa tatgtacagt attccaaaga      3600
     cacccgtacc attcgacacg ttgcatattg atcatttagg acccctaccc aacattacat      3660
     ctcgcaagaa atatatattg gttgtcatag atgccttcac caaatttaca aaactatacg      3720
     ctaccgctac aactaatact aatgaagtat gtgaagctct cactcaatat atgtcatatt      3780
     atagcagacc gaagcgaatt ataagtgacc gtgcaacatg ctttacttca accgcattca      3840
     aagagtttgt tgattctaat gatatcactc atgttcttaa tgcaacgggt tccccccaag      3900
     cgaacgggca ggtggaacgt gttaatcgtg tacttcgccc cattttaagc aaattatgca      3960
     attcttctga ccattctgat tggagttcgc atttgagatc cgctgaacat gccctcaaca      4020
     atactgtcca tagttccaca aactttcttc cttcgattct tcttttcggc attgagcaac      4080
     gaggccagat cttagacgaa ttacatgaat tccttaatga taagcatgtt acaacaaacc      4140
     gtgacttaaa ccttcttcgt tctgaagcgt tatctaacat tgaatattca caatatcgaa      4200
     acgaacaata cgtagccaat agaaccaagc cagcccctag tttctctgaa ggagatctgg      4260
     tagctatcaa atacacagat tccactaatg caaataagaa actcgtctgc aagttccgcg      4320
     gcccttatat agttcataaa gtacttcccc acgaccgtta tgtaattaga gatgttgatg      4380
     gatttcagat cacgcagatg ccttatgacg gagttttaga ggtagacaaa cttaggaaat      4440
     ggtctaataa catataacat gatgtattac tagacagcat cgtattgctt taattagaat      4500
     agaattgagg tcaatcctag gtcaggatag ccgagc                                4536
//
ID   GYPSY32-LTR_AG repbase;    DNA;    INV; 260 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY32-LTR_AG is an LTR of retrotransposon GYPSY32_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY32_AG; GYPSY32-I_AG; GYPSY32-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-260
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY32_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 57-57 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY32-LTR is a long terminal repeat of GYPSY32_AG (its internal
CC   portion is deposited as GYPSY32-I_AG).
XX
SQ   Sequence 260 BP; 58 A; 59 C; 50 G; 93 T; 0 other;
     tgtaatatct tagacatatg accacgatgc ggccactgtg cttcgtgtgt caaacttgat        60
     catgaccgct gtcatgatca tcgtgcgcgc ggcaatgaac aataaacgtc attcgtttac       120
     ggatcgtcgt accggcaaca tcttcagtct tcttctgtgt cggtttattt cttctgcctt       180
     tattcttctg ccttcggact gtgctcagtt tgagttcatc ggttgatttg aattaattca       240
     aattaattct aatcattaca                                                   260
//
ID   GYPSY33-I_AG repbase;    DNA;    INV; 4577 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY33-I_AG is an internal portion of retrotransposon GYPSY33_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY33-I_AG; GYPSY33-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY33_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4577
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY33_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 58-58 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY33_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY34_AG,
CC   GYPSY35_AG,
CC   GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY33-I_AG consensus was reconstructed after multiple
CC   alignment of 5-7 copies.
CC   The consensus encodes the 1466-aa GYPSY33_AGp gag-pol like
CC   polyprotein
CC   (pos. 82-4479).
CC   The sequence of the LTRs flanking GYPSY33-I_AG is deposited as
CC   GYPSY33-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..4479
FT                 /product="GYPSY33_AGp"
FT                 /translation="MLTKDQMLCALECANVPVSPNATIAQIRKMYETTFES
FT                 VQNMNNPYDVPSVSGKPKEETALALQSETHVSENNATTMTHAENDVTAILR
FT                 NEHNTATHDSTIAGNPQSDTPNLNDEIEMLKKKLEILELKQRITALEAPTV
FT                 PFPGPQPPIFNFEEIVDKFSGDNNDHIERWFKELERAFLPYNMDNTMKLHY
FT                 TRRLLTGTAAKFAKSLDFTAYHELKDSLIETFSETKSLENVYKQLRSRQLG
FT                 RNESITRYVLDMQALAWGTPVPEEDLVNIIIDGINDPINTASIRFAARSLT
FT                 DLKRLLKRYEQIRPQHIATPSSSGTIRQPSNVSKTSDNQQAPAVVRCYNCS
FT                 QFGHYQNSCPMPRRPPGSCFKCHQVGHAARNCPIKIIIPSAAAHYKDQGNE
FT                 DQGTTLDEFEQVSVAFQNQNDPSKVLTCVRSLLDTGSPVSFIDSSIVPKTL
FT                 VKPPLTSRYQGLGNQMLVVCGEVSCKINLRKDEAVHTFIILPSDSIAWPMI
FT                 IGRDLLKKFNIFLYKNKSKIELNKGPTNLNRETCMSSLAQSIPLPQDTLDL
FT                 VPFKLERLCPAEYHDTQNEAFEEICAIDLSDDVSELHIGKHLTGHENSALL
FT                 CSINQNYLNYPSEKIIPPDHSMKISLTHDTPLFTKPRRLSYGERNQVREIV
FT                 NDLLEKQIIRPSNSPYASPLVLVRKKSGEIRMCIDYRPLNKITVRDNFPLP
FT                 LIETCLEHLSNKRIFTLLDLKSGFHQVKMHDDSIKYTSFVTPDGQYEYVKM
FT                 PFGLKNAPSEFQRFINNILREFIEADKLVVYLDDIIIASVDFNSHLSTLSA
FT                 VLTKIRQNGLELRLDKCRFGQQELDYLGYKANSCGIRPSDRHIAVIKNYPI
FT                 PTNTKQVRRCLGLFSYFRRFVPSFSHIAKPLTNLLQNEKRFDFDSTCENAF
FT                 KSLREKLILSPVLAIFDPKRETELHCDASSSGFGAVLLQKQDDGRFHPIAY
FT                 FSKSTTTDESKLHSYELETLSIIYALKRFHVYVHGIPVKIVTDCNSLVETL
FT                 KNRNTSAKIARWSLFLENYEYSIQHRAGSSMNHVDALSRLESSCAVNEIDL
FT                 DFQLQVTQARDSVIEEIKKNLELGPVAGFTLQDGLVYRVSPSKGLQLYVPR
FT                 EMSENIIRHVHEKIGHLAVDKTYDKIGTHYWFPYMKSKVEHFIRNCLKCII
FT                 YSAPTRINNKNLHSIPKEPVPFHTLHIDHLGPLPSIRSQKKYILVVIDAFT
FT                 KFMKMYATRSTNAQEVCNILNQYMSYYSRPKRIITDRATCFTSNQFENFLE
FT                 HNGIQHILNATSSPQANGQVERVNRVLRPMLSKLSDFHDHSDWSSQLRSAE
FT                 YALNNTKHASTNFTPSILLFGIEQRSCEVDELEEFLDEKNILNVNRPLIEI
FT                 RHKASENIKRSQEINENYFNKNHKPATKFQKGDFVVIRNVDTTTNTNKKLI
FT                 PKYKGPYVIHKVLPSDRYVIRDIDGCQVTQMPYDGVLEANKLKKWIEPCLR
FT                 V"
XX
SQ   Sequence 4577 BP; 1509 A; 945 C; 848 G; 1275 T; 0 other;
     tctcagaagt gggatacgac aaattataga gtgaaaatta atagcgttgt caagcgtgtg        60
     ttgtttagcg tgtcggtcag aatgttgaca aaagaccaaa tgctgtgcgc cctggaatgc       120
     gctaatgttc ctgtgtcgcc gaatgccacc attgcgcaaa tacgtaagat gtacgaaact       180
     accttcgaaa gcgtacaaaa tatgaacaat ccatatgatg ttccatcggt tagtggaaag       240
     cctaaggaag aaactgcact tgctctacaa agcgagacac atgttagtga gaacaatgcc       300
     accaccatga cgcatgctga gaacgacgta accgccattt tgcgcaatga acacaatacc       360
     gctacgcatg attcaactat agctggaaat ccgcaaagcg acacacccaa tttaaacgat       420
     gagattgaaa tgctaaaaaa aaagcttgaa attcttgagc tcaaacaacg aattacagcc       480
     ctagaagctc caaccgttcc tttcccgggg ccacaaccac cgatattcaa ttttgaagaa       540
     attgtcgata aatttagcgg tgacaataat gatcacatcg agcgttggtt caaggaactg       600
     gagcgtgcgt ttctcccata caatatggat aatacaatga agctccacta tactcgtcga       660
     ttgctcactg gtacggctgc aaaatttgca aaatcactag attttacagc ctatcatgaa       720
     ttgaaagata gtttgataga aactttcagc gaaaccaaat cgcttgaaaa tgtatacaag       780
     cagctcagat cacgacaact tggaagaaac gagtccatca cacggtacgt tctagatatg       840
     caagccttag catggggaac tccagtacca gaagaagatc tggtaaatat catcatcgat       900
     ggaatcaatg atcctatcaa cacagcatct attcgattcg ctgctcgttc tttaactgat       960
     ttgaagcgac tattgaaacg gtacgagcaa atccgccctc aacacattgc aacaccatca      1020
     tcatcaggga ccatccgcca accaagtaat gtgtcaaaaa catcggataa ccagcaggca      1080
     cccgctgtag tgagatgcta caactgttct caatttggac actatcagaa ttcctgccct      1140
     atgccacgtc gaccaccagg atcgtgcttt aagtgtcatc aggttgggca tgctgctcga      1200
     aactgcccaa ttaaaataat catcccatcg gctgccgcgc attataaaga tcagggtaat      1260
     gaagatcagg gtacaacttt agacgaattt gaacaggtga gtgttgcctt ccaaaatcaa      1320
     aatgacccga gcaaagtgtt gacatgcgtg cgttctctcc ttgatacagg aagcccagtg      1380
     agctttatcg actcttctat agttccaaaa actttggtta aaccacctct gacatcaaga      1440
     tatcagggtc tcggaaacca gatgcttgtt gtctgtggag aggtgtcttg caaaataaat      1500
     ctgcgaaagg atgaggcagt acatacattt atcatcctcc ctagcgatag tattgcctgg      1560
     cctatgatta ttggtcgtga cctattaaaa aaattcaata tctttctgta taaaaacaaa      1620
     tcaaaaattg aacttaataa aggacctacc aatcttaaca gagaaacatg catgtcatca      1680
     ttggctcaga gtattccgtt gcctcaagac acattagatt tagtaccatt caagttagaa      1740
     agactatgcc ctgcagaata tcacgacacc caaaatgagg catttgagga aatatgtgcg      1800
     attgatttat ctgatgatgt ttcagaactc catataggta aacatttaac tggccatgaa      1860
     aattcagctc ttttatgttc tataaatcaa aattatttaa attatccatc tgaaaaaatt      1920
     attccacccg atcacagcat gaaaataagt cttactcatg acacaccttt gttcacaaaa      1980
     ccccgtcgac tatcatatgg agagcgaaat caagtacgtg aaatagttaa tgacttatta      2040
     gaaaaacaaa taattcgtcc aagtaattcg ccgtatgctt cgcctctagt tttggtcaga      2100
     aagaagagtg gggaaattcg catgtgtatt gactataggc ctctcaataa aatcactgtt      2160
     cgagataatt ttccgctgcc gttaatagaa acatgtttgg aacatttaag taataagcga      2220
     atttttacat tactagattt aaaaagtggc tttcatcaag tcaaaatgca cgatgattcg      2280
     attaaatata cctcgtttgt tacccctgat ggtcaatacg agtatgtcaa aatgccattc      2340
     ggattaaaaa acgctccttc tgaattccaa cgatttatca ataacatatt acgtgaattt      2400
     attgaggcag acaaattagt agtttattta gacgatatca tcattgcttc agttgacttc      2460
     aattctcatt tgagcactct tagtgctgtc cttacgaaaa tacgccaaaa tgggttagag      2520
     ctccgtttag ataaatgtag gtttggtcaa caagaattag attatctggg gtataaagca      2580
     aattcttgtg ggatacgtcc cagtgacagg cacatagcgg ttattaaaaa ttatccgata      2640
     ccgacaaaca ccaaacaggt acgcagatgt ctagggcttt tctcatattt ccgtcgtttc      2700
     gtcccttcat tttcacacat agcgaaacca ttaactaatt tgttacaaaa tgaaaagcgg      2760
     tttgatttcg attctacgtg tgaaaatgca ttcaaatcct tacgagaaaa actcatttta      2820
     tctcccgtat tggcgatatt tgatccaaaa cgtgagacag aactgcactg tgatgccagt      2880
     tcttctggtt tcggtgcggt tttgttacaa aaacaagatg atggcagatt ccatcccata      2940
     gcatattttt ctaagagcac aaccacggat gaatctaagc tccatagtta tgaactagaa      3000
     acattgtcga tcatatatgc tttgaagcgc tttcatgttt atgttcatgg aatacccgta      3060
     aaaattgtta cagactgtaa ctctctcgtg gaaaccctca aaaaccgtaa cacctcagcc      3120
     aaaattgctc gatggtcgct tttccttgaa aattacgaat attccattca acatcgtgcg      3180
     ggttcctcta tgaatcatgt tgacgcttta agcagattgg aatcaagttg cgctgtcaat      3240
     gaaattgatt tggactttca actacaagta actcaggccc gagattctgt cattgaggaa      3300
     ataaaaaaaa acttagagtt ggggcctgtt gcaggtttta cattgcagga cgggttagta      3360
     tatcgcgtat caccttccaa gggactacaa ctatacgttc cacgtgaaat gtcagaaaac      3420
     atcattcgtc atgttcatga aaaaataggt catctagctg tcgacaagac ttatgacaaa      3480
     attggtacac attattggtt tccgtatatg aagtcaaaag ttgaacattt cattcgaaat      3540
     tgtttaaaat gcataattta ttcggctcct actcgtatta ataacaaaaa cctacatagc      3600
     atcccaaaag aaccagtacc gttccataca cttcatatag accatttggg tcccttacct      3660
     tcaattagat cacaaaagaa atacatatta gtagtcatcg atgccttcac taaatttatg      3720
     aaaatgtatg caactcgctc aacaaatgcc caagaggtct gtaatatcct caaccaatac      3780
     atgtcatact atagccgccc aaagcgaatc attaccgatc gtgctacgtg tttcacttct      3840
     aaccaatttg aaaatttcct cgaacataat ggtattcaac acatcttaaa tgccacaagt      3900
     tccccccaag ctaatgggca ggttgaaaga gtcaatcgcg ttcttcgtcc tatgcttagt      3960
     aagctctcgg actttcatga tcatagcgat tggagttctc aattacgatc agcagaatat      4020
     gctttgaaca acactaaaca tgcgtctaca aactttactc cttctattct tctttttggc      4080
     atcgaacagc gaagttgcga agtggatgaa ttggaggaat ttctggatga aaagaatatt      4140
     ctaaatgtaa atcgaccact gatcgagatc cgtcataaag catcagaaaa tataaaacga      4200
     tcacaggaga taaacgaaaa ttacttcaat aaaaatcata aacctgctac caaattccaa      4260
     aaaggtgatt ttgtagttat acgtaacgtt gacactacca cgaacactaa caaaaaactg      4320
     attccaaaat ataaagggcc atatgtcatt cataaagttt taccaagcga tcggtacgtt      4380
     atcagagata tagatggttg tcaggtaact caaatgccat acgatggtgt gttagaagcg      4440
     aataaactaa agaaatggat agaaccatgc ttgcgtgttt aggctaatga tgattaacgg      4500
     caacatttac cttagattag tttaagaact aggctaggct tgaattgagg gcaattaaat      4560
     gttcaggatg gccgagc                                                     4577
//
ID   GYPSY33-LTR_AG repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY33-LTR_AG is an LTR of retrotransposon GYPSY33_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY33_AG; GYPSY33-I_AG; GYPSY33-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-222
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY33_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 59-59 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY33-LTR is a long terminal repeat of GYPSY33_AG (its internal
CC   portion is deposited as GYPSY33-I_AG).
XX
SQ   Sequence 222 BP; 73 A; 42 C; 45 G; 62 T; 0 other;
     tgtaggcgaa tgtggatcat aaacgtcaac ctcatacatc aactgtcaac cgaataatgt        60
     ccaaaccttg tacaaatgta aaatcttggc aacccggccg agctgtcaga aaaagagaat       120
     aaaaagggga attcacgttg tgtacgcagt tggaaaagca cgtgtaattc tgtgtcttat       180
     gtccttcagt ccttaagaat attttatatg acgttgttta ca                          222
//
ID   GYPSY35-I_AG repbase;    DNA;    INV; 4409 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY35-I_AG is an internal portion of retrotransposon GYPSY35_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY35-I_AG; GYPSY35-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY35_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4409
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY35_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 62-62 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY35_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG,
CC   GYPSY34_AG,
CC   GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY35-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 1364-aa GYPSY31_AGp gag-pol like
CC   protein
CC   (pos. 262-4353).
CC   The sequence of the LTRs flanking GYPSY35-I_AG is deposited as
CC   GYPSY35-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           262..4353
FT                 /product="GYPSY35_AGp"
FT                 /translation="MNELEQRILDLCEEFTKTGLAKRCQQKGLPSTGTKEE
FT                 MARSLVESEEMSIADDSTMDQFHDMEEKSEAAASSAAAKVEPSIVQQPYSF
FT                 RDVEEGIEAFCADGSVDFAAWLTDFEDVATMAGWSDEQKYVMCRKKLVGTA
FT                 RSFLLTMRGVSSFGALRKALVAEFGEKVRPMDIHRQLASRRRKKGESALDF
FT                 IYSMQRIAKQIDLDEESVCEYIVDGIAESEAQRAALYEARTVRELKEKIAW
FT                 QERAAQKQTRAVRSAWHERAGQKENKSLPVQDTIPVKNATKARCLNCGVMG
FT                 HMVRNCPEQRSGPRCFQCNEFGHRANQCGQRNKQQPGTSTNLINHVQAELP
FT                 TKMVQLGGKNIKAVIDTGSEVSIVRQDTLQDLGCVQQRMEQSIQQLRGFGG
FT                 IIQKPIGELVTNIGIDDVEYEIGLLVVSPNSMKVPMLVGMNFLRSVCYAIT
FT                 NDGVQIFKKKSDNEESGSDHESAVYKIDCEQIQELEVPEKFRDKVQALKSQ
FT                 YEASVVDNYEDNCPIQMKIVLEENASPFRHTPRRLPLMEEEAVENHVGEWL
FT                 RKGIVRPSTSDFASRVVVVKKKDGTSRICIDFRKLNTMVLKDGFPVPLLEE
FT                 VLEQLQSAKVFTVMDLENGFFHVPIEEASRKYTAFVTKSGLFEFNRVPFGL
FT                 CNSPAVFIRFVNYVFQNLLRENVLHIYMDDIVVCGSTAEECLEKMGKVFEV
FT                 AAQNGLKIKWKKCRFLQTSIEFLGHHIENGSIWPGQEKVSAVKNFPIPKNI
FT                 RAVQAFLGLTGFFRKFIKGYSIMAKPLTDLLRKEVDFKMGSIEIEAFNDLK
FT                 SALVKEPVLKIYDRNAKTEVHTDASIKGFGATMLQWFDGELHPVYFWSKKA
FT                 TDAEAKHHSYVLEAKAIYLALKKFRHYLLGIKFKLVTDCNAFKQTLKKADV
FT                 PREVVQWVICLEEFSFEVEHRAGDRLKHVDCLSRYPQLTMMVTCEVTARVK
FT                 RSQQRDDSIKAIVEILNTRPYEDYKIKGELLYKCVEGQDLLVIPRDMEKQI
FT                 ISDIHSEGHFGLCKTMHAIKQRYFIPHLERKVKLILNSCVKCIIHNKKLGR
FT                 KEGFLHPIDKGDQPLQTLHLDHVGPMDATGKQYKYVLTVVDGFSKFVWLYP
FT                 TKTTGAEETLRKLECWSTIFGYPARIVTDRGSAFTANAFGEYANRHGIQHV
FT                 VCTTGVPRGNGQAERVNRTMLSVLTKLSSEDPGKWFKVVPSVQRAINSHIH
FT                 VAAGKSPFELMFGTKMRTSEVEDLSRLLEEEAYDRFDCERQEMRKGAKNDI
FT                 CNAQNVYKKHYDLSRKPEYAYVVGDLVAIKRTQFVAGRKLASEFLGPYEVI
FT                 KINRNGRYKVKRAANCEGPNITTTSCDNMKLWSFAISNDKVFSEDEAESEN
FT                 E"
XX
SQ   Sequence 4409 BP; 1390 A; 734 C; 1202 G; 1083 T; 0 other;
     tttggtgtca gaagtgggat gaaaatccag caaacagtgg ttttacgtgt agcttgtgga        60
     atgaacaaga gtgattagaa cgttgagtag attgatctaa gaaaatcaat tgaagtgagg       120
     gaaaagtgat cccgtgacta attgatttga ggtgatcaga gttagactca aatttctgtg       180
     gagtgaaagt cagtcaaagt gaaggaaagt gttcgttcct gtgaccgatt gattttcgcc       240
     aaaaaagttg actgatcaaa aatgaatgag ctggagcagc gcattcttga tctgtgtgaa       300
     gaattcacga agactggcct agcgaaaagg tgccagcaaa aagggttgcc ctcaacggga       360
     accaaagaag aaatggcaag atcactagtg gaaagtgaag aaatgtccat cgcggatgat       420
     tctacaatgg atcaatttca tgacatggag gaaaaatctg aagcggcagc tagcagtgca       480
     gcagcgaaag tggagccgag catagtacag cagccctact cctttaggga cgtggaagag       540
     ggaattgagg cgttttgtgc agatggctcg gtggattttg ctgcgtggct gaccgatttt       600
     gaggatgttg cgaccatggc gggatggtca gatgagcaaa aatatgtgat gtgtcgaaaa       660
     aagttggtgg gcacagcgag aagttttttg ctaacgatgc gtggggtctc atcgttcggg       720
     gctcttcgca aggcgctagt agcagaattc ggagaaaaag tgcgtccgat ggacattcat       780
     cgtcaacttg catcacgacg acggaaaaaa ggggaatctg ctttggattt catttactct       840
     atgcagcgaa ttgccaaaca gattgacctt gacgaagaaa gtgtgtgtga gtacattgtt       900
     gatggtatcg cggagagcga agcgcaacgc gcggcattgt acgaagcgcg cacggtgaga       960
     gagttgaaag aaaaaattgc ctggcaagag cgtgcagcgc agaaacaaac acgtgcggtg      1020
     agatctgcat ggcacgagcg cgcggggcag aaagagaaca aaagtttgcc ggttcaagac      1080
     acaattcctg tgaaaaatgc aacaaaagca cgttgtctta attgtggtgt gatgggacat      1140
     atggtacgga attgtccaga acaaagaagt ggaccacggt gttttcagtg caacgagttt      1200
     gggcatcgtg cgaatcagtg tgggcaaagg aataaacaac aaccgggtac aagtacaaac      1260
     ctgataaacc atgtccaagc tgagctaccg acaaaaatgg tccagttggg gggaaaaaat      1320
     ataaaagcgg ttattgacac aggcagcgaa gtgtcgattg tccgtcaaga cacattgcaa      1380
     gatttagggt gtgtacaaca aaggatggaa caatccatac aacaattgcg tggttttggt      1440
     ggaatcatac aaaagccgat aggcgaattg gtaacaaaca ttggcatcga tgacgttgaa      1500
     tacgaaatcg gtttgctggt ggtctctcca aattcgatga aggttccaat gctggtaggc      1560
     atgaattttc ttcgaagtgt ttgttacgct ataaccaacg atggagtgca gatttttaag      1620
     aaaaaaagtg acaatgagga atcgggtagc gatcacgaaa gtgctgtgta taagattgat      1680
     tgtgaacaaa tccaagaact ggaagtgccg gagaagtttc gagacaaggt acaagcgctg      1740
     aaaagtcaat acgaagcttc agtggtggat aattacgaag acaattgtcc catacaaatg      1800
     aagatagtgt tggaagaaaa cgcgtcacct tttcggcata cgccccgtcg cttgccttta      1860
     atggaggaag aagcagtcga aaaccatgta ggggaatggt tgaggaaggg aattgttcgt      1920
     ccatcgacgt cagactttgc aagtcgcgtt gtggtagtga aaaagaaaga cggcactagt      1980
     cggatttgta tcgactttcg gaaactgaat acaatggttc taaaggatgg gtttccagtt      2040
     ccattgttag aagaagtttt ggagcagctt cagagtgcaa aggtgtttac tgttatggat      2100
     ttggaaaacg ggttttttca tgtgccgata gaagaagcta gccgcaagta taccgcattc      2160
     gttacaaaat cgggattatt tgaatttaat cgtgtgccat ttggactatg caactcgcca      2220
     gcggtgttca taaggtttgt gaattatgtt tttcaaaatt tgttaagaga gaatgtgttg      2280
     catatttaca tggacgatat tgtggtttgt ggtagtacgg ctgaggagtg tttagaaaaa      2340
     atggggaaag tgtttgaagt agcagcccaa aatggattaa aaataaagtg gaaaaagtgt      2400
     cgtttccttc aaacatcgat tgagtttttg ggacatcata ttgaaaacgg atcgatttgg      2460
     cctggacaag aaaaagttag tgcggtgaaa aatttcccta taccgaaaaa cataagagca      2520
     gtgcaagcgt ttttgggttt gacgggattt tttaggaaat ttataaaagg atattctatt      2580
     atggccaagc ctcttactga cttgttgcgg aaggaggtag attttaaaat gggtagtata      2640
     gagatcgaag cctttaatga tttgaaaagt gcgttagtga aagaaccggt gctcaaaata      2700
     tacgatcgaa atgctaaaac agaagtgcac acggatgctt ccatcaaagg gtttggggca      2760
     acaatgttgc aatggtttga tggagagctg catcccgtat atttttggag caagaaggca      2820
     accgatgcag aggccaaaca tcacagctat gtgttggaag caaaggctat ttatcttgcg      2880
     ttgaaaaaat tcaggcatta tctcctgggg ataaagttca agcttgtgac cgactgtaat      2940
     gcattcaaac aaacattgaa gaaagcagac gttccgcgag aggtggtgca gtgggttatt      3000
     tgcttggagg agtttagttt tgaggtggaa catcgtgccg gagaccgatt gaaacacgtc      3060
     gattgtctca gtcgatatcc acagttaaca atgatggtga catgtgaagt gacggctcgt      3120
     gttaaaagaa gtcaacaaag ggacgattca ataaaagcga tagttgaaat tcttaacacc      3180
     agaccgtacg aagattacaa aataaaagga gaacttttat acaagtgtgt cgaaggacaa      3240
     gaccttttag tgattccgcg tgatatggaa aaacaaataa tttcggacat tcatagtgag      3300
     ggtcattttg gactatgcaa aaccatgcac gccataaaac aacggtattt tataccgcat      3360
     ttagagcgaa aagtgaaact gattctcaac agctgtgtga agtgtatcat ccacaataag      3420
     aagttaggac gaaaggaagg gttcctgcac cccattgaca agggagatca gccactgcaa      3480
     acccttcacc tcgatcatgt agggccgatg gacgccacgg gaaagcagta caaatacgtt      3540
     ttgactgtag tggatggttt ttccaagttc gtctggttgt acccgacaaa aacgactgga      3600
     gcggaggaaa cgttgaggaa gctggaatgc tggtcgacaa tttttggcta tccggctcgt      3660
     atcgtaaccg acaggggctc agctttcaca gccaacgcat ttggtgagta cgctaatcgc      3720
     catggtatac agcacgtcgt ttgtacaaca ggagtgccga ggggcaacgg tcaagcggag      3780
     agagtgaacc gcaccatgtt atcggttttg acgaagttgt catcggaaga tcctggaaag      3840
     tggttcaagg tggtgccttc tgtgcagcga gcgattaact ctcatattca cgtagcagct      3900
     ggaaagtcgc cattcgagtt gatgttcggg acaaagatga ggacgtcgga ggtggaagac      3960
     ttgtcgcggt tactggagga ggaagcgtat gatcgttttg attgtgaacg gcaggaaatg      4020
     cgaaaaggag cgaagaatga catttgtaat gcgcaaaatg tatataaaaa acattatgat      4080
     ttatcacgaa agccggaata tgcgtacgtg gtaggagatt tggtagccat caaaagaaca      4140
     caatttgtag ccggaagaaa gcttgctagc gaatttttgg gaccgtatga agttattaaa      4200
     attaatcgta acggacgata caaggttaaa agggcagcca attgcgaggg accgaacata      4260
     acaacaacaa gttgcgacaa catgaagtta tggtcgtttg ccatcagtaa cgacaaagta      4320
     ttttcggaag atgaagcaga atcggaaaat gaataaaatg aattagaaga aaaatcttca      4380
     ggggctgaag atagggtagg acggccgaa                                        4409
//
ID   GYPSY35-LTR_AG repbase;    DNA;    INV; 232 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY35-LTR_AG is an LTR of retrotransposon GYPSY35_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY35_AG; GYPSY35-I_AG; GYPSY35-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-232
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY35_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 63-63 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY35-LTR is a long terminal repeat of GYPSY35_AG (its internal
CC   portion is deposited as GYPSY35-I_AG).
XX
SQ   Sequence 232 BP; 85 A; 35 C; 69 G; 43 T; 0 other;
     tgtaagaaag gaaaagcgct agtggtagtg agagatagaa ataacggtag cgagatcagg        60
     agaacgagag cgtactagga acgagttgcg agagagagaa cgcgcagcgt taaattcggg       120
     agcgcgggtt aagcgcgagg agttgaattc ggaccgcgaa gcgaataaca tgttgtgaac       180
     taaagtaatc aataaagcgt tatttgtctt aaaccgaata aaaaactcca ca               232
//
ID   GYPSY36-I_AG repbase;    DNA;    INV; 5414 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY36-I_AG is an internal portion of retrotransposon GYPSY36_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY36-I_AG; GYPSY36-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY36_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5414
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY36_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 64-64 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY36_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG,
CC   GYPSY34_AG,
CC   GYPSY35_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY36-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 1423-aa GYPSY36_AGp gag-pol like
CC   polyprotein
CC   (pos. 1086-5354).
CC   The sequence of the LTRs flanking GYPSY36-I_AG is deposited as
CC   GYPSY36-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..5354
FT                 /product="GYPSY36_AGp"
FT                 /translation="MERFLSEYTRAGLVRMCETAGLALSGTKEELAKRLLE
FT                 AGVTSDGQREENIGEINASGYFDVDADSETGSNGATAAGGAMAVTAESRAI
FT                 VTEVVSQKMDVPRSIETHAPFVQPYSFRDVEEGIDPYGNDLTKDIGAWFDD
FT                 FEGVANMAHWTDEQRFIMCRRKMVGVARSFLSTERNIISYAALRSKLMKEF
FT                 GEIVRSSDVHRRLMSRVKRPQETMLEYVYEMQRIARDTEIDVESIIEYIVD
FT                 GVACDTKVRASLYRARSMAELKEELLRMERAEKKSVVKRNNGQQDQRNGGV
FT                 GLRKCYICGELGHEAQKCVKSTKCFECGRSGHRAKDCSIKKRLVADTRAIV
FT                 PSTNERSPVKCFKCGGVGHIARNCNKNSYSVMGGQIQESNKELPTKQVSVC
FT                 GKEYAALIDTGSEVSLMREDVFAGLPPQFKQWKQSNHILRGLGGVPQNGFG
FT                 EATLAVNIDNWVYQVQWVLVPYEAIRTPLIVGMDFLHSVNYNINNETVMIE
FT                 PRRNEHVLGIQRNEEEHERQQHVNNILSEVMNTMCASETMEPVIPPQFRGE
FT                 IMTMIETYNNTSCSERKETCPVKLEIVPDGQIMPFRHPPSRLSFSESEAVD
FT                 AQVDEWLKEGIVRPSVSNFASRIVIVKKKDGSNRVCVDYRKLNSMILKDGF
FT                 PIPVIDDVVQKLQCAQWFTVMDLENGFFHVPVAENSKKYTAFATRRGLYEF
FT                 NRAPFGLCNSPAVFIRYVNHVFRDLITNNLLDLYMDDMVIHGSTERECLWK
FT                 TERVLKVAAEHGLNIKWKKCQFMQREITFLGHRVKTGQISPSVEKINAVKH
FT                 FRIPQNVKAVQAFLGLTGFFRKFVKDYSKIARPLTDLLKKDTSFEITGSAL
FT                 EAFKRLKEELIKEPVLRLFDPEAKTELHTDASKAGFGATLLQWVEGKLHPV
FT                 YFWSKKTSEPESNKHSYVLEAKAVFLAVKKFRQYLLGRPFKLVTDCAAFKC
FT                 TLKKSEVPQEVLPWVMFLQDFVFEVEHRSGKKMQHVDCLSRYPTEVMTVTN
FT                 ELTARIRKNQQQDEMVKAISEILLDRPYGSYKLKGGLLYTVVDGNELLVIP
FT                 RNMRKQIIENAHNDGHYGAQRTMHTIRQKFWIPHLEVLVKQHISNCVKCIL
FT                 HNKKLGRQEGCLNPIDKGDAPLRTLHLDHVGPMDATSKQYRYILTVVDGFS
FT                 KFVWLYPTRTTNAEEVLQKLESWSSIFGYPTRVITDRGAAFTAKVFAEFVQ
FT                 KQNIEHIVSTTGVPRGNGQAERINRTVLSVLGKLSMGDTAKWYKQVNRVQR
FT                 SVNGHLNSSTGRSPFELMFGVRMRQASDDLLHEMLEKEWYEEYERDRQGMR
FT                 QEARKEIELAQKRYKEQFDKKRKPEHGYKIGDLVAIKRTQFVAGRKLANEF
FT                 LGPYEITKVKRNGRYDVKKAASCEGPQVTSTSDDNIKLWSYATIESSDEDE
FT                 LDEDQELKE"
XX
SQ   Sequence 5414 BP; 1577 A; 937 C; 1625 G; 1275 T; 0 other;
     tttggtgtca gaagtgggat cacgacgaac gcgctttggg acaagtgtga atttcctgga        60
     aattcgattg cgatcgacgt tgtgtggagt gagacagtga ggcatcaaag cgctgggtgc       120
     gctggacgga gcacaaaaga acagtgtacg agtgtagcgg cgtttcgtac gggtgttcgg       180
     tgcgatcagg cgctgggtgc gcaagttttg gcggtgtgaa agaaggcgct gtgtgcgcga       240
     gtagttgtgc gtgtttatgc gttggtgcgc tgtgtgcgcg tgaagttgcg gcttgcaaca       300
     aaaaggcgct gggtgcgcga gaagctgtgt gcgttggtgc gctgtgtgcg cgggaagttg       360
     cggcttgcaa cgaaaaggcg ctgggtgcgc gagaagctgt gtgcgttggt gcgctgtgtg       420
     cgcgtgaagt tgcggcttgc aacgaaaagg cgctgggtgc gcgagaagct gtgtgcgttt       480
     ttttttgcgc tgggtgcgcg agtgtgctag gtgaaaaaag gattagcgct gtgtgcgcgt       540
     gaagttgcgg cttgcaacaa aaaggcgctg ggtgcgcgag aagctgtgtg cgttggtgcg       600
     ctgtgtgcgc gtgaagttgc ggcttgcaac gaaaaggcgc tgggtgcgcg agaagctgtg       660
     tgcgtttttt ttgcgccggg tgcgcgagtg tgctaggtga aaaaaggatt agcgctgtgt       720
     gcgcggtgaa gttgcagtta gcatcgaaaa aggcgcgggg tgcgcgagaa gctgtgtgcg       780
     tttgtgcgct gtgtgcgcgt gaagttgcgg tttgcaacag aaaggcgctg tgtgcgcgag       840
     tggctttcgg cgtttctgca ctgggttcgc aagttaagcg gtaggcaagg agattggtgc       900
     ggtgggcccg aaaagctgcg gtttgaaaga ggtgtgctgc ataactaggc gtcgtgcttg       960
     taagtgctgg gtgcctgagg agcagacgct gtgcgtgtgt gtgtgtgagg aactaacgct      1020
     gtgcgtttgg ggtgcgaaaa agagttgcgt tttctagcat tttggcgcgt tatatacaaa      1080
     aaaaaatgga acgttttcta agcgaatata cgcgtgcggg attggttcgg atgtgcgaaa      1140
     cggcgggact agcactgtcc ggaaccaagg aagaattagc taagcgttta ttagaagcag      1200
     gggtaacaag cgacggccag cgcgaggaaa atatcggcga aataaacgcg tctggatatt      1260
     ttgacgtgga tgcggattca gaaactggca gcaatggtgc gactgcggcg ggtggtgcta      1320
     tggctgttac cgcggaatcg agagcaattg tgacagaagt ggtgtcacaa aagatggatg      1380
     tgcctagaag tatagaaaca catgcaccgt ttgtgcagcc ctattcgttc cgcgacgtgg      1440
     aagaaggcat tgacccttac ggcaatgacc ttaccaaaga cattggggca tggtttgacg      1500
     atttcgaggg agtggccaac atggcgcact ggacagacga gcaaagattt attatgtgcc      1560
     ggagaaaaat ggtgggagtt gcgcggagtt ttctctcgac tgaaagaaac ataatatcgt      1620
     acgcagcttt gcgatcaaag ctgatgaagg aatttggtga aatagtgcgg tcgagtgatg      1680
     tgcataggcg gcttatgtca cgggtaaaac gtccccagga aacaatgctc gaatacgtgt      1740
     atgagatgca gcgtatagct cgagatacgg aaatcgatgt tgagagcatc atcgagtata      1800
     tcgtggacgg tgtggcgtgc gacacaaaag tgcgtgcatc cctttatcga gcgcgcagta      1860
     tggccgagct gaaagaagag ctgttgcgca tggagagagc ggagaagaaa agtgttgtga      1920
     agaggaacaa tggtcaacaa gatcaaagga atggtggggt aggtttgcgg aagtgttata      1980
     tttgcgggga gttagggcat gaagcacaaa agtgtgttaa gtcaacaaaa tgttttgaat      2040
     gcggtagatc ggggcatcgg gcgaaggatt gttctatcaa gaagcgactg gtagctgaca      2100
     cgcgcgctat tgtaccgagt acaaatgagc gatctccggt aaagtgtttc aaatgtggag      2160
     gcgtggggca tatcgctcga aactgtaata aaaatagcta cagcgtgatg ggaggtcaga      2220
     tccaggaatc aaataaagaa ttaccaacaa aacaagtgag cgtgtgcggg aaggaatatg      2280
     cggctctgat cgacaccggg agcgaggtat cactcatgcg tgaagatgtt ttcgcgggac      2340
     ttccaccgca gttcaaacaa tggaaacaat cgaaccacat tttgagaggg ctaggtggag      2400
     tgccccaaaa tggattcggc gaagccacac ttgccgtaaa catagacaat tgggtatatc      2460
     aggtgcagtg ggttctggta ccatacgagg cgattagaac accccttatc gtaggtatgg      2520
     attttttgca ttctgttaat tacaatatta acaacgaaac ggtcatgatc gagccccgaa      2580
     gaaacgagca tgtgttgggg atacagagaa atgaagaaga acacgaacga caacagcatg      2640
     tgaacaatat tttaagcgaa gtgatgaaca caatgtgcgc cagcgagaca atggaaccgg      2700
     ttatcccgcc tcaatttcgg ggcgagataa tgacaatgat cgagacatac aataatacca      2760
     gctgcagtga gagaaaagaa acgtgtccag ttaagttgga aattgttcca gacggacaga      2820
     taatgccgtt ccgccaccca ccaagcagat tgtctttttc ggaatctgaa gcagtggatg      2880
     cgcaagtgga tgagtggctt aaagagggta ttgttaggcc ttctgtgtcg aattttgcga      2940
     gccgcatagt tatagtgaag aaaaaggacg ggagcaaccg ggtgtgtgtc gattatcgga      3000
     aattgaattc gatgattttg aaagacggat tcccgatacc agtaatcgat gatgtcgtgc      3060
     aaaaactaca atgtgcacaa tggttcacgg ttatggacct ggagaatgga tttttccatg      3120
     tgccggtagc agagaatagt aaaaaatata cagcgtttgc aacgagacga gggttgtacg      3180
     agtttaatcg cgcgccgttt ggtttgtgta attcgcccgc agtgtttatc cggtatgtta      3240
     atcatgtgtt tcgggatctt attacaaaca acctactgga tttgtacatg gatgacatgg      3300
     ttatccatgg ctcaaccgaa cgagaatgtt tatggaaaac ggaaagagtg ttaaaagtgg      3360
     cagcagagca cggtttgaac attaagtgga aaaagtgcca gttcatgcaa agggaaataa      3420
     cgtttttggg tcatcgggtg aaaactggac agatatcgcc aagtgtggaa aaaataaatg      3480
     cagtgaaaca ttttcgtatt ccgcagaacg ttaaagcagt gcaagcgttt ctgggattaa      3540
     cggggttttt ccggaagttt gtaaaagact attcgaaaat cgccaggccg cttacggatt      3600
     tgttgaagaa agatacatct ttcgaaataa cgggaagtgc attggaagcc ttcaaacggc      3660
     taaaagagga attaataaaa gagccagtgt taaggttatt tgatcccgaa gcaaaaacgg      3720
     aacttcatac ggacgcttca aaagcagggt ttggtgcaac attgttacag tgggtagaag      3780
     gaaaattgca tccagtgtat ttttggagta aaaagacaag tgaaccggaa tccaacaaac      3840
     atagctacgt gctcgaggca aaagcagtgt ttctagcggt taaaaagttt cggcagtatc      3900
     ttttgggtcg tccttttaaa ttagttactg actgtgcagc gtttaagtgt acattgaaaa      3960
     aatcggaagt gccgcaggaa gtgttaccat gggtgatgtt cctacaagat tttgtgtttg      4020
     aagttgaaca ccgatcgggt aaaaaaatgc agcacgtgga ctgtttgagc cgatatccga      4080
     cggaagtgat gactgtgaca aatgaactaa cggcacgtat tcgtaagaac caacaacagg      4140
     acgagatggt gaaagcaatt agtgaaattc tattggatag gccctacgga tcgtataaat      4200
     tgaaaggtgg acttttatac actgtagtgg atggaaacga actattagtg attccacgaa      4260
     acatgaggaa gcagatcata gaaaacgcac ataacgacgg gcattatggg gcacagcgta      4320
     ctatgcatac cataaggcag aagttttgga ttccacatct agaggtattg gtgaagcaac      4380
     atatctcgaa ctgtgtgaag tgcatcttac acaacaaaaa gttaggacga caagagggat      4440
     gcttgaaccc aatcgacaaa ggagatgcgc ctctacgcac attgcatttg gaccatgtgg      4500
     ggcccatgga cgccacttca aaacaataca ggtatatttt aaccgtggtg gatgggtttt      4560
     ctaaatttgt ttggctttat cctactagaa caacgaatgc ggaggaagtg ttgcaaaaac      4620
     tggagagttg gtcgtcgata ttcggatatc cgacccgagt aataacggac agaggggcag      4680
     cgttcacggc taaggtattt gccgaattcg ttcagaagca aaacatcgag catatcgtct      4740
     ccactacggg agtaccacga ggaaacggcc aggcggaacg tataaatcgg acggttttat      4800
     cagtgctggg aaaactatcg atgggagata ccgctaagtg gtataaacaa gtcaacagag      4860
     ttcaacggtc ggtaaacggg caccttaatt cgtcaacagg gcgatctcca tttgaattaa      4920
     tgtttggggt cagaatgaga caggcatctg atgatttatt acacgaaatg ctggaaaaag      4980
     aatggtatga agaatacgaa cgggatagac agggtatgag acaagaggcc agaaaagaaa      5040
     tagagttggc gcaaaagaga tataaggagc aatttgataa gaaaagaaag ccggaacacg      5100
     ggtataagat tggtgatttg gtagcaataa agagaactca atttgtggca ggaagaaagt      5160
     tagctaatga atttttgggt ccgtacgaaa taacgaaggt aaaaagaaat gggcggtatg      5220
     acgttaaaaa ggcagctagt tgcgaagggc ctcaagttac gagtacgagt gacgacaata      5280
     tcaaactatg gtcatatgct acgattgaat cgtctgacga agacgaatta gatgaagatc      5340
     aggaattgaa ggaataagga taagtaaact aggtgtagga catcgaggat cgaagtccat      5400
     caggaagggc cgag                                                        5414
//
ID   GYPSY36-LTR_AG repbase;    DNA;    INV; 294 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY36-LTR_AG is an LTR of retrotransposon GYPSY36_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY36_AG; GYPSY36-I_AG; GYPSY36-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-294
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY36_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 65-65 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY36-LTR is a long terminal repeat of GYPSY36_AG (its internal
CC   portion is deposited as GYPSY36-I_AG).
XX
SQ   Sequence 294 BP; 68 A; 70 C; 65 G; 91 T; 0 other;
     tgtagaattg tatgtaaagt tgaaagctag tattgcctga tgcaatcggg ataatattat        60
     aaagaagaga acttgggctg agcagtcagt cgttgatcag aactcaataa agaaacaccg       120
     tcaaaagaga aaaagtctgt gtcaacgttc tccctcattc ggtccacctc ctccaccccc       180
     tcggttggtt ttgcggttgt cgtgatccgg ttgtgtcgag tattgttctc cagtgttgga       240
     gtattcggcg ccttccctca ttcctttccg ctctcgtgtc tcccctttct taca             294
//
ID   GYPSY37-I_AG repbase;    DNA;    INV; 4382 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY37-I_AG is an internal portion of retrotransposon GYPSY37_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY37-I_AG; GYPSY37-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY37_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4382
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY37_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 66-66 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY37_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG,
CC   GYPSY34_AG,
CC   GYPSY35_AG, GYPSY36_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY37-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 1432-aa GYPSY37_AGp gag-pol like
CC   polyprotein
CC   (pos. 69-4364).
CC   The sequence of the LTRs flanking GYPSY37-I_AG is deposited as
CC   GYPSY37-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..4364
FT                 /product="GYPSY37_AGp"
FT                 /translation="MTTIEELCENLTKIGLARKCQQLGLATSGGKQEMAKR
FT                 IIDHTTMATNDENDGDHQNREIREAVNAREQNAVLQNDDGVSENDDLHTHN
FT                 DDNDDREDGGARAKCSRNDDDERYDDDGVGDNDDGGNDDYNDDDDDEDNDD
FT                 DDDDDALLFQTAIRTSTPAARKERKFHGTSMVYSFRDMEESIDTFGADEGE
FT                 DVRLWLKQLEMISRSARWNNEQMLIMCRKKLTGTARRFVFSLRDASSYSVV
FT                 KKALIKEFAPFVRATDVHRALANRKKKPTETMRDYVYEMQRIALPIELDEP
FT                 SLCEYIVDGVTDDEFYRSTLYEANTVQRLKEKLSIFEKATKNTKVAKKNRH
FT                 DDNADVKKERQRFEGKCKGEVKRKCFNCGGTTHVASECPKKNDGPKCFRCN
FT                 DFGHLSKECPKTQKTNKKDNDARINVVKAAVNEKLSVSVELFGQNIKAVVD
FT                 TGSDISLMRFDLFEELKSNHIQMHESNLKVRGYGGGVSSVRGKTTISATID
FT                 AEIFDIQFYVVPCEAIDSPMLIGMEFLSSVDYSITPEGVTIKKYRTDETVG
FT                 IETKWIRRIAGYIDENELLVPTKYREEVMTLIEDYKPQKNMTDRNQLTITL
FT                 SDLNVVCENPRRLALLEKEVVRKQIDEWLDEGIIQPSQSEYASPIVVVPKK
FT                 DGSYRVCVDYRELNKKIVRDKFPMPNVEEQVDQLAEARVYTTLDLKNSYFH
FT                 VPVDESSRKYTAFVADSGQYEFLRAPFGLCISGSGFGRFINDVLREFIRDG
FT                 TVLAFVDDIIIPSKTEEDGLNAMKRVFEVAAKAGLTFNWKKCVFLQRRVEY
FT                 LGYTIYDGKIEPAPAKIEKLKQFPQPTTVKQLQRFYGLASYFRKFVPSFAG
FT                 IARPLSELLKKDRFTELNDEAMNSFLCLKDILAAYPVLRIFRADGDVELHT
FT                 DASKTAIAGILMQRAEDDGKFHPCYYFSRLTSSAEKNYHSFELEALAVVES
FT                 VRKFRCYLLGRTFKIVTDCMAFKDSVKKKKLNARIAKYVLALSEFDYVMEH
FT                 RPGEKMPHVDALSRANVMIISTTILSKIRMAQNKDDRAKAIIATLERGDTV
FT                 DKFILNNGVIYENDGDKRRLYVPKSMEIDIIRSAHEQGHFGVRKTKERINA
FT                 DYFIVGLDEKIKSCIDTCVPCIIGEKKRGKPEGELQPIPKGDVPLDTLHVD
FT                 HLGPMPSTKKSYGYILTVIDAFTKFVWLFTTKSTTAEEVVKKLQVITSTFG
FT                 NPRRIISDRGSAFTSGHFTRFCENEGIEHHTIATGVPRGNGQVERVHRIII
FT                 PMLTKLSMEKPEEWFKHVARVQKCLNNSWQRTINMTPFELMTGIKMRTKED
FT                 AVLHELLSREIQNDFTEGRDELRRTAKRNIEKMQEENCKYYNLRRRPSRQF
FT                 KIGDLVAIPKTQYGVGQKFKPRFYGPYEITRILDNDRYEVKKLDEETEGPK
FT                 KTLTAGSCIKTWILPGRK"
XX
SQ   Sequence 4382 BP; 1440 A; 777 C; 1103 G; 1062 T; 0 other;
     tgggggctcg tccgggaacg ggctaagtac ggtgataaag tgaaacgacg aaaaaccaag        60
     agtgaataat gacgacaatc gaagagctgt gcgaaaacct tacgaagatc ggcctcgcac       120
     gcaagtgcca gcagcttggt ttggcgacgt ccggcggtaa gcaggagatg gccaaaagga       180
     ttattgacca tacgacgatg gccacaaacg acgagaacga cggtgatcat cagaatcgtg       240
     aaattcgtga agccgtgaac gctagagagc agaacgccgt gctgcaaaac gacgacggtg       300
     tgagtgagaa cgacgactta cacacacaca acgacgacaa cgacgatcga gaagatggcg       360
     gcgcgcgtgc aaaatgttca cgcaacgacg acgacgaacg atacgatgat gatggtgttg       420
     gtgacaacga cgacggcggc aacgatgatt acaacgatga tgacgacgat gaagacaacg       480
     atgatgacga tgatgacgac gcattattgt tccaaacggc gatcagaact tcgaccccag       540
     cggcaaggaa ggaacggaaa tttcatggaa catcgatggt ttattctttc cgcgacatgg       600
     aagaaagcat cgacactttt ggtgctgatg aaggtgagga cgtacgatta tggctaaaac       660
     aacttgaaat gatttctagg tcggcacgat ggaataatga gcaaatgctg attatgtgta       720
     gaaaaaaact gacaggtacg gcgagacgtt ttgtgttttc cttacgcgat gctagcagtt       780
     atagtgttgt gaagaaagcg ctaatcaaag agttcgctcc ttttgttcga gcaactgacg       840
     tgcatagggc attagctaat cggaagaaga agccaacgga gacgatgcgt gattacgtgt       900
     atgaaatgca gcgcattgct ttgcctattg agttagatga acctagttta tgtgagtata       960
     ttgtggatgg cgttactgac gacgaatttt atcgctccac attatatgaa gccaatacgg      1020
     tacaaaggct gaaagagaaa ctaagcattt ttgagaaggc aacaaagaat accaaggtag      1080
     ctaagaagaa tcgacacgat gacaatgctg acgttaagaa agaaaggcaa cgctttgaag      1140
     ggaagtgtaa aggtgaagtg aaacgtaaat gtttcaattg cggcggtacc acacatgttg      1200
     cttcagagtg tccgaagaaa aacgatggtc cgaagtgctt tagatgcaac gattttggac      1260
     atctttccaa agagtgtccc aaaacacaaa agacgaacaa gaaagataat gacgcacgaa      1320
     tcaatgtagt gaaagcggct gttaatgaaa aactcagcgt atcagtggaa ttgtttggac      1380
     agaacatcaa agcagttgtg gatacaggta gcgatatttc tctaatgaga tttgatcttt      1440
     ttgaagaatt gaaaagtaac cacattcaga tgcatgaatc gaacttgaag gtacgaggat      1500
     acggtggcgg cgtaagctca gtacgtggta aaacgacgat atctgcaaca atcgacgcag      1560
     agatttttga tattcaattc tatgtcgttc catgtgaagc cattgattca ccaatgttga      1620
     tcggaatgga atttcttagt tcagttgact attctatcac tccagaagga gtaacgataa      1680
     agaaatatcg aacagacgag acagttggta tagagacgaa atggattcgg cgtattgcag      1740
     gatacattga tgaaaatgaa ttattggttc caaccaagta tcgcgaagaa gtaatgacgc      1800
     taattgaaga ctataagcca cagaagaata tgactgatag aaatcagctg acgattactt      1860
     tatcagattt gaatgttgtt tgtgagaacc ctcgacgatt ggctctgttg gagaaagagg      1920
     tagttagaaa gcaaatcgat gaatggcttg acgaaggaat catacaacca tcgcaaagtg      1980
     aatatgcaag tcctattgtc gttgtgccaa agaaggatgg ttcgtaccgc gtttgtgttg      2040
     actaccgtga attgaataag aagatcgtgc gtgacaaatt tccaatgcca aatgttgaag      2100
     agcaagtcga tcagctcgct gaagctcgag tttacaccac tctcgactta aagaattcct      2160
     attttcacgt accagttgat gaaagtagca ggaaatatac ggcattcgtg gcggatagtg      2220
     gtcagtatga atttttaaga gcaccatttg gactgtgcat tagtggaagc ggttttggta      2280
     gatttattaa cgatgtgctt cgagaattta ttcgagatgg aacagttttg gcgttcgtag      2340
     acgatataat cattccgtct aaaactgaag aagatgggct gaatgcgatg aaacgtgtat      2400
     ttgaagtagc agcgaaggct ggattgacgt ttaactggaa aaagtgcgta tttctacaac      2460
     gacgggtaga gtacttgggg tacacaattt acgatggaaa aatagaacca gcacccgcga      2520
     agatcgaaaa gttgaagcag tttccacaac cgacgaccgt gaagcaactg caacgattct      2580
     atgggttagc aagctatttt cgaaagtttg tcccatcatt tgctggtatc gcacgaccgt      2640
     tatcggaatt attgaagaaa gatcgtttta ctgaattgaa cgacgaagcg atgaattctt      2700
     tcctatgttt aaaggatata cttgcagctt atccagtact acgcattttt agagctgacg      2760
     gagatgtaga attgcataca gatgctagta aaacagcgat agcaggcatt ttaatgcaac      2820
     gagcagaaga cgatggtaaa tttcatccgt gttattactt tagtcgactc acaagtagtg      2880
     ctgagaagaa ttatcattcg ttcgagttgg aggcattagc tgtagtagag tcagtacgga      2940
     agttcagatg ctatttgctt ggacgtacat ttaagatcgt gactgattgc atggcattca      3000
     aggactcagt taagaagaag aagttgaacg caagaattgc caagtacgta ttagctcttt      3060
     ctgaattcga ttacgtaatg gaacatcgac caggagaaaa gatgccgcac gttgacgcat      3120
     tgtcaagagc taatgtgatg atcatttcaa caaccatctt atcgaagata cgaatggctc      3180
     agaataagga tgaccgagct aaggctatta tagcaacatt ggaacgagga gatacggttg      3240
     acaaatttat tttgaacaat ggcgttattt acgaaaacga tggcgataaa cgacgacttt      3300
     acgttccaaa atcaatggag atagacatca taaggtctgc tcatgaacaa ggacattttg      3360
     gcgtccgcaa aacaaaagaa cgcattaacg cagattattt tattgttgga ttagacgaaa      3420
     agattaagag ttgcattgac acgtgtgttc catgtatcat cggcgaaaag aaaagaggta      3480
     aaccagaagg tgaactacaa ccgataccta aaggagacgt accattggat acgttacacg      3540
     ttgaccactt aggaccgatg ccgtcgacaa agaagtcata tggatatatt cttacagtca      3600
     tagacgcttt cacaaagttt gtctggttgt ttacgactaa atcaacaact gcagaagagg      3660
     tcgtaaagaa gcttcaggtg atcacgagta cgtttggcaa cccacgacga atcatcagtg      3720
     atcgaggttc tgccttcacg tcaggacatt tcaccaggtt ttgtgaaaac gaaggcattg      3780
     agcatcacac gatagcaacg ggagttccgc gaggaaatgg acaagttgag cgtgtccatc      3840
     gtatcatcat cccaatgctt acgaagttgt ccatggagaa accggaggaa tggtttaagc      3900
     acgtagcgcg agttcaaaaa tgtttgaaca atagctggca gagaacaatt aacatgacac      3960
     cgtttgagct aatgaccggt atcaagatgc gtacgaagga agatgctgta ctacacgaac      4020
     tactatcacg cgagatacag aatgatttca ctgaaggaag agatgagttg cgcaggacag      4080
     cgaagcgtaa tattgaaaaa atgcaagagg agaattgtaa gtactacaat ctgcgtagaa      4140
     gaccctcacg acagtttaag atcggagatc ttgtagctat accgaagacg cagtatggag      4200
     tagggcaaaa gtttaaaccg cgcttttatg gtccgtatga aatcacgcgt attttagata      4260
     acgatcgata tgaagtaaag aagttagatg aggagacaga agggcctaag aaaacattaa      4320
     cagcaggaag ttgtattaag acgtggatac ttccggggcg gaagtaatgt caggaaaggc      4380
     cg                                                                     4382
//
ID   GYPSY37-LTR_AG repbase;    DNA;    INV; 171 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY37-LTR_AG is an LTR of retrotransposon GYPSY37_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY37_AG; GYPSY37-I_AG; GYPSY37-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-171
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY37_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 67-67 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY37-LTR is a long terminal repeat of GYPSY37_AG (its internal
CC   portion is deposited as GYPSY37-I_AG).
XX
SQ   Sequence 171 BP; 53 A; 44 C; 38 G; 36 T; 0 other;
     tgtaggatga gagggctacc ccccgaaaac gtcaaaatga cagctagata gcgagggcat        60
     gacagcaggc gatgagcgac acaatcttac cgcgagcgtc accgtgaaca gaagcaagaa       120
     tatacgaatt tcctttaatc acctacaccg ctcgtttcct tatttcttac a                171
//
ID   GYPSY38-I_AG repbase;    DNA;    INV; 4388 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY38-I_AG is an internal portion of retrotransposon GYPSY38_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY38-I_AG; GYPSY38-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY38_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4388
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY38_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 68-68 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY38_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG,
CC   GYPSY34_AG,
CC   GYPSY35_AG, GYPSY36_AG and GYPSY37_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY38-I_AG consensus was reconstructed after multiple
CC   alignment of 6 copies.
CC   The consensus encodes the 1328-aa GYPSY38_AGp gag-pol like
CC   protein
CC   (pos. 387-4370).
CC   The sequence of the LTRs flanking GYPSY38-I_AG is deposited as
CC   GYPSY38-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           387..4370
FT                 /product="GYPSY38_AGp"
FT                 /translation="MENALIAAMVEDHTRLGLVKKCEERELSTVGTKEELA
FT                 ARVVAYDRTDAADFADAELPTVDRVQPYSFRDVEDGVDAFGAGSTQDVRAW
FT                 IRSFEEISTMAGWNEDQKLIMCRKKLTGVARGFLNTLKGVTTYANLRRALI
FT                 NEFAPSVRASDIHRQLSTRRKKKEETGLEFVYAMQQIAQQIDLDEASLVEY
FT                 VADGITNDERQRSMFYEAKNINELKEKIRLFERAANKFQQERPKVVGQRIP
FT                 DKLKQRHCFNCGSASHRLIECPTKQEGPTCFKCGTKGHSAKDCTTAQGRRP
FT                 HCYACGEVGHVATRCPNNSNNNRVQTMTSSFPIVCVSVGNQLCEAVIDTCS
FT                 DVTLMRWDLFQELKLNCNELKPSARVIKGYGGKQSNVCGELTIRATIDEVE
FT                 EIIRFVVVPSNSIDTKMLIGIDVLKRVNYVITNGHAKITKQQEEEEKPTGV
FT                 DDRWVYRIVCESHQEIDAPSNYRRVICDMVNNYEPAKISNVESEMKILVNN
FT                 EEVVRTLPRRIAPLEKEVVRKQVREWLNDGIIQPSRSPYASAVVVVPKKDG
FT                 SHRVCVDYREMNKRIVRDSYPMPNIEDQIDQLADARVYSVLDLKNSYFHVK
FT                 VEKESRQYTSFVTTDGQYEFLRAPFGLCLSGNAFGRFIDAVLHELIIDGTV
FT                 MAFVDDIIIPSRDEEHGLASLRRVLEVAQRAGLHFNWKKCSFLKRRVEYLG
FT                 YTVYEGKIEPAPQKIEKVKYYPQPKTVKQLQCFIGLASYFRKFIEGFARIA
FT                 RPLTTMLKKESVFEFNEEARAAFESIKEKLVEYPVLHIFKASLVTELHTDA
FT                 SKDALAGILLQRSEEDGLLHPCYYYSRLTNKAEKNYHSFELESLAVVESIK
FT                 KFRCYLLGKKFKVVTDCIAFKQSLNKKVPNARVSRWFVTLSEFDFEVEHRS
FT                 GEKMKHVDALSRANVLKISAGVCEKIIQGQLRDEDLTAIRTALDQGEERNG
FT                 FCLINGVLYKNENAHNKICVPRAMETGMIREVHERGHFGIKKVKEQLTEDY
FT                 FIPEVEKKIKYCIDNCVRCIVSDRKRGRAEGELHPIPKGEVPLDTFHVDHI
FT                 GPMPSTRKCYNYILTVVDAFTKHVWLFATKTTSAEEVIKKLTIISDTFGNP
FT                 RRIICDRGSAFTSSLFTKFCEEANIELHHIVTGVPRGNGQVERVHRIIIPT
FT                 LAKLSYENPENWFKFVNNVQKAINNSWQRSIRMTPFELMIGVKMKEKEDIR
FT                 INDILQEEIQKMFTDDRNEIRKIACKGIARIQDENRRTYNLRRKSIQKYKI
FT                 GDIVAIPVTQFGIGRKIKRKFFGPYKIVKTFSNERCEVLKLDEQTEGPMRT
FT                 TTAFDQIKIWADSGES"
XX
SQ   Sequence 4388 BP; 1418 A; 689 C; 1131 G; 1150 T; 0 other;
     tgggggctcg tccgggaaga ggctaggcga tgcaaagtga tgagtttaca gttatgaaaa        60
     gttgcataat gtgttaaagt tgataaagtt gttcaagtcg taaagttgat aaagttgtaa       120
     agttgttaaa gtcgttcatg tcgtaaagtt gataaagttg taaagttgtt aaagtcgttc       180
     aagtcgtaaa gttagtaaag ttgttaagtt gcagtagtgg ttcgaattgg aaaagttgac       240
     ttagtcggtg tttcacctga tgtgaaagtg tgaatttgtg acgaaaagtt gacattgtga       300
     cgcataaagg ttgttaaagt tgcgattgtg acgttgtaaa gtgtgtttaa ataaaagcta       360
     aagttgtgca aaacgttaat gagaaaatgg agaacgcgtt gattgcagcg atggtcgaag       420
     accatacgcg gttgggtttg gtgaaaaaat gtgaagagcg tgaattaagt acggtcggaa       480
     caaaagagga gctggccgca cgcgtcgttg cgtatgatcg aaccgatgca gctgattttg       540
     cggatgctga gttgcccacg gttgacagag tgcaaccata ctccttccgc gatgtcgaag       600
     atggtgttga tgcatttggc gccggatcta cgcaagacgt gcgcgcatgg atcagaagtt       660
     ttgaggagat aagtacgatg gctggatgga acgaggatca gaaattgatc atgtgccgta       720
     aaaagttgac cggagtcgca cgtggttttc taaatacgct gaaaggtgtg acgacatatg       780
     caaatctacg tagagcgttg attaacgagt ttgctccaag tgtgcgtgca agcgacatac       840
     acaggcagct atcgacgcgt cgcaagaaaa aagaggagac cgggttagaa tttgtttatg       900
     ccatgcagca aattgcgcag caaatcgatt tagacgaagc cagcctcgta gaatatgtgg       960
     cagatggaat aactaacgac gaaaggcaga ggtcaatgtt ctacgaggca aagaatatta      1020
     acgaacttaa ggagaaaata cgtttgttcg agagagcggc gaacaagttt caacaggaac      1080
     gcccaaaagt tgtcgggcaa cgaattccgg ataagttaaa acaacgccat tgtttcaatt      1140
     gtggcagcgc ttctcatcga cttatcgaat gtccaacaaa acaagaaggt ccgacttgtt      1200
     tcaaatgtgg aacaaaagga catagtgcaa aagattgtac gacagcgcaa ggaagaagac      1260
     cgcattgtta tgcttgcggc gaagttgggc atgttgcaac acgatgcccg aataacagta      1320
     ataataatag agttcaaaca atgacgagct catttccaat tgtctgtgtg tcagttggaa      1380
     accagttgtg cgaagcggtg atcgatacgt gcagtgatgt gacgctcatg cgctgggatt      1440
     tgttccagga attaaaactc aattgtaatg agttgaaacc gtctgcacgg gtaataaaag      1500
     gctatggtgg aaaacaaagc aacgtgtgtg gtgagctgac gatccgtgct accatcgatg      1560
     aagttgagga aataattcgt ttcgtggtgg taccttcgaa ttctatcgac accaaaatgc      1620
     tgataggaat cgatgtgctc aaaagggtta actacgttat cacaaacggt catgcaaaga      1680
     taacaaagca acaggaggaa gaggaaaaac ccacgggtgt tgatgatcgt tgggtgtatc      1740
     gtatagtttg tgaaagtcat caagaaatag acgcaccgtc aaattatcgt cgcgtgattt      1800
     gtgatatggt gaataattat gaaccagcaa agatttctaa cgttgaaagt gagatgaaaa      1860
     tattagtgaa caacgaggag gtagtgcgta cgttgccaag aagaatagct ccgctagaga      1920
     aagaggtggt aaggaaacaa gttcgcgaat ggttaaacga cggaataatt cagccatcgc      1980
     gaagccctta cgctagcgca gttgtggttg taccgaagaa ggatggatct caccgtgtgt      2040
     gtgtggatta tcgtgagatg aataagagga tcgtgcggga ctcttatccg atgcccaata      2100
     tcgaagacca gattgatcag ttggcagatg ctcgtgtgta cagtgtatta gatctgaaaa      2160
     attcgtattt tcacgtcaag gtggagaagg aaagtcgcca gtacacatct ttcgtaacaa      2220
     cggatgggca gtatgagttt ttacgtgctc cgtttggatt gtgtctcagc ggcaatgcgt      2280
     ttggacgctt catcgatgca gtacttcatg agttgatcat agacggtacc gtgatggcct      2340
     tcgtagatga catcatcatt ccgtctcgag acgaggagca tggtttggcg tctttgcggc      2400
     gagttttgga agtggcacag cgggcaggac ttcacttcaa ttggaaaaag tgttcgttcc      2460
     tcaaacggcg tgtagagtat ttggggtata ccgtctatga aggtaagatt gaaccagcac      2520
     cccaaaaaat agaaaaagtt aaatattacc cgcagccaaa aacggtgaaa cagctgcaat      2580
     gttttatagg gctagctagt tattttagaa agtttataga aggttttgcg cgtattgcca      2640
     ggccattgac cacaatgtta aaaaaagaga gtgtttttga atttaatgaa gaggcaaggg      2700
     cagcgtttga atcgattaaa gaaaaattag tggaatatcc tgtattacat attttcaagg      2760
     cgagtttggt taccgaattg catactgatg cgagtaaaga tgctctggcc ggcatattgt      2820
     tgcagcgttc tgaggaggat ggtttattac atccttgcta ttattatagt aggttgacta      2880
     ataaggccga gaaaaattat cactcattcg aattagaatc attagccgtt gtggaatcca      2940
     taaagaagtt caggtgttac ttgctaggta agaaatttaa agttgtgacc gattgtatag      3000
     cgtttaaaca atccttaaac aaaaaagttc ccaatgcgcg agtgagtcgt tggtttgtaa      3060
     cgttgtccga gtttgatttt gaagtagaac atcgttcagg tgaaaagatg aaacatgttg      3120
     acgctctttc aagagcaaac gtattgaaaa tatcggcagg tgtatgtgag aaaataatac      3180
     aaggacaatt gcgcgatgaa gatcttacgg caattaggac ggcgcttgat cagggcgaag      3240
     aaagaaatgg tttttgtttg ataaatggag tactttataa aaatgagaat gctcataaca      3300
     aaatatgtgt acctcgagca atggagacgg gtatgataag agaagtacac gaacgaggac      3360
     attttggaat taagaaagtg aaagaacaac taacagagga ttattttatt cctgaagtag      3420
     aaaagaagat aaaatattgt attgataact gtgtccgatg catagtgagt gatagaaaac      3480
     gaggcagggc agagggagaa cttcatccaa taccgaaagg agaggttccg ttggatacct      3540
     ttcatgttga tcatattggc cctatgccat ctactcgcaa atgttacaat tacattctta      3600
     ccgttgtcga tgcgtttacg aagcatgttt ggctatttgc tacaaaaact actagtgcgg      3660
     aagaggttat aaaaaaattg acgattatat ctgatacgtt tggaaatccg cgaaggataa      3720
     tttgcgatag aggatctgct tttacctcta gtttatttac aaaattttgc gaagaagcca      3780
     atatagaatt gcatcacatt gttacaggag tcccacgagg gaatggccaa gtagagcgtg      3840
     tacaccgcat aattatccct acattagcga agttgtcgta tgaaaatccc gaaaattggt      3900
     ttaagtttgt aaataatgtt caaaaggcga taaataatag ttggcagcga tcgattagga      3960
     tgacaccttt tgaattgatg atcggagtga aaatgaaaga gaaggaagat attcgaatta      4020
     acgatatttt gcaagaagaa atccaaaaga tgtttacaga tgatcgtaat gaaataagga      4080
     aaatagcatg caaagggatt gccagaatcc aagatgaaaa tcgtaggacg tacaatttgc      4140
     ggcgtaaatc gattcaaaag tataagatag gagatatcgt agcgattcca gtaactcagt      4200
     tcggaatagg acgaaaaatt aagaggaaat tctttgggcc gtataagatt gtcaaaacat      4260
     tttcaaatga gcgttgtgag gtactgaagc tagatgagca aactgaggga ccaatgagaa      4320
     cgacaactgc attcgatcaa ataaaaatat gggcagattc aggagaatca tgatgtcagg      4380
     aaaggccg                                                               4388
//
ID   GYPSY38-LTR_AG repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY38-LTR_AG is an LTR of retrotransposon GYPSY38_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY38_AG; GYPSY38-I_AG; GYPSY38-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-229
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY38_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 69-69 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY38-LTR is a long terminal repeat of GYPSY38_AG (its internal
CC   portion is deposited as GYPSY38-I_AG).
XX
SQ   Sequence 229 BP; 71 A; 44 C; 60 G; 54 T; 0 other;
     tgtaggaaat aggagacagt tgacagttgt cagacaaggg atgtaaggcg aatgtcaagg        60
     aatgaattta ggatcaccct gtgctggtgt caatcgaact gacgacgcag taggtttagc       120
     tagagcgaaa cattcacgcg ggagaagcca agcgaaccag acgaaagtga ataaagtgga       180
     ttgtaaaacc atcgctttcc gcgtatcctc ttttcttcat cgttctaca                   229
//
ID   GYPSY39-I_AG repbase;    DNA;    INV; 6337 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY39-I_AG is an internal portion of retrotransposon GYPSY39_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY39-I_AG; GYPSY39-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY39_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6337
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY39_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 70-70 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY39_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY39-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 359-aa GYPSY39_AG1p gag-like
CC   polyprotein (pos. 574-1650) and the 1168?aa GYPSY39_AG2p
CC   pol-like polyprotein (pos. 1605-5108).
CC   The sequence of the LTRs flanking GYPSY39-I_AG is deposited as
CC   GYPSY39-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..1650
FT                 /product="GYPSY39_AG1p"
FT                 /translation="MPKYTPFPKVRSLNFTKDKKIPVKMEQNIHALIESMR
FT                 SLEERVNTLQAENDSLQRFQQQQQPTTSSRSADYFRIPDPIRVIPGFDGNK
FT                 KQLIGWLTTVKKTLDLFKNNVAPEIFSVYEQTVINKIEGKARDTICVNGNP
FT                 TTFDEVADILQNVYGDRNNIATYQTQLWNLKQNESLSLHYRKTKEILINMK
FT                 SVARQNTVYASHWEAINLFLEQECLAAFINGLSKTYFGYAQTAQPEDLESA
FT                 YAFLCRFQNAERTKSNTNNGFEKHPSVDKNVKRDNKFSQPKHLENRPFNNM
FT                 KPSSDRTKIVPMDVDQSLRSNMRNKIFSHTAEEDDGKTISEESDSDEETDN
FT                 EEDVNFQITANLNPPS"
FT   CDS           1605..5108
FT                 /product="GYPSY39_AG2p"
FT                 /translation="RRCKFSNYCKLKPTELNAINGLPFYTTKLNGSNIKLL
FT                 VDSGANKNFLNPELVPLTQRVKCETITIKNKNGKFKSQECTFITILDKKLK
FT                 FYLFKCHNYFDGILGYESLSDMETLIDTKNHKLILPDRTIDLEIRTLEPPS
FT                 ITLNANNSQIIKLPVSQTKGNIFLPKDIQIKDAIIPSGVYKAKQGYAKVLA
FT                 RNYGDTLTFHWTKPAKTYELDKMIEINHMSTHPYNDHPQNYIANLENLIRT
FT                 DHLNKEEKHKLFEILKQNLGIIHQEKEKLSCTTAIRHRIKTKDDIPIHTKT
FT                 YRYPNIHKAEVNRQIEEMIADGIIQHSISPWTSPIWIVPKKSDASGKEKWR
FT                 IVVDYRKLNEKTIDDRYPIPNIEEILDKLGRSMYFTTLDLKSGFHQIEVDK
FT                 KDRPKTAFSTEKGHFEFIRMPFGLKNAPATFQRAMNNILGDLVGRNCLVYL
FT                 DDIIIFGKSLQQHLDNLNKVLKKLIESNLKVQLDKCEFLRKECEFLGHIVT
FT                 QDGIKPNPNKIEKILHWPIPKTTTHIKGFLGILGYYRKFIKDFSKLTKPLT
FT                 KCLKKGSKITHNDEFINCFNDCKQMLTTDPILKYPDFSRKFILETDASDFA
FT                 LGAVLSQKFEDGKEHPIAYASRTLNETECNYSATEKELLAIVWATKHFRPY
FT                 IFGTVFEIRTDHKPLVWLRQKNDLNRRLLHWKLALEEFEFEIKYKKGTLNG
FT                 NADALSRITENPALTSELNANTASNNTDTMTQHSADTNDDEFIPATEKPLN
FT                 EFRNQIILEENNNDSREAITLFGNYHRITIKTPLFGPAMLINIIKEYASPK
FT                 CVTGICCSEKILQNLQIIYKNYFSRAKSIKLFWTKTILEDVTDEIDQDLII
FT                 ERQHNANHRGIIETKLHIARKYYFPNMKTKITKFINICKICQKAKYERRPY
FT                 KQKYQITATPKKPLEIVHMDIFIISDKHFLTLCDKFSRLTMAIPLQSRNAI
FT                 HILKALTQFFANVGRPCLLVMDQECSFKSTTIKQFLEENNVEFHYTSVGQS
FT                 SSNGTIEIVHRTIRELHNIISLRDSTKNLSTTSKINLAVSIYNDSIHSQTN
FT                 ISPKELFFGFKNEDPIPEDLQERIKQKEELYRVYATKQKEKKSKYIEKLNK
FT                 TREEPELFKDNDTIFERKRNNLKHEERYRETKVFDNLVTNILDRNGRKIHK
FT                 SKLKRKRKT"
XX
SQ   Sequence 6337 BP; 2560 A; 1250 C; 970 G; 1557 T; 0 other;
     ggcgcagtcg gctaggccca attcacgttc agtgacaagt gttcaagtac agtgcagtga        60
     aataacggaa ataaatctgt gtatcgcccg gactttgctc catcgcccga tccgtggttg       120
     actcgtgacg atcgcgtgaa tttcattatt tcataaagtg taagaacaag tgcacgaacg       180
     gttggtttca actatttaga attggaagag aacattcgaa caaaagctag tggcaagact       240
     ccccagccag cgttactggg taaactaatc aacgcaggac aatcgctgac ccaacccgtg       300
     gacaacgagt gaccaaagaa gaaaaggaag gacaatcgct gacccaatcc gtggacaacg       360
     agcgaccaag gaagaaaagg aaggacaatc gctgacccaa tccgtggaca acgagcgacc       420
     gaagaagaag aggaaggaca aagcaaagga caggtaacgg aaaactctaa tttcccgaca       480
     cgtggataaa aaaggtgagt tacatcctaa agcataagtt cccctactct tataataaaa       540
     aggcggtagg caacaaacaa tttttatcat tgaatgccaa aatatacccc tttcccaaaa       600
     gttcgttctt tgaacttcac taaggacaag aaaattccag tgaaaatgga acaaaatata       660
     cacgcattga ttgaatctat gcgctcgtta gaggaacgcg ttaacacact ccaagcggaa       720
     aacgatagtt tacaacgctt ccaacaacaa caacagccaa cgacctcgag tcgcagtgct       780
     gactattttc gtatcccgga tccaattagg gtcattcccg gattcgacgg aaacaaaaaa       840
     cagttaatcg gttggttaac aacagttaaa aaaacactag acctcttcaa aaacaatgtg       900
     gcaccagaaa tattcagtgt ctacgaacag accgtaatta ataagataga gggcaaagca       960
     cgtgacacta tttgtgtgaa cggaaaccct actacttttg atgaagtcgc agatattttg      1020
     cagaacgttt atggcgatcg aaacaacatc gcaacgtatc aaacacaact gtggaaccta      1080
     aaacaaaacg aatctttgag ccttcactat agaaaaacaa aagaaatttt gatcaatatg      1140
     aaatcagtag caagacagaa tacggtatac gcttcacatt gggaggcaat taacctgttt      1200
     ttagaacaag aatgcctcgc tgcgttcata aatggtctga gcaaaacata ttttggatat      1260
     gcacaaaccg cacaaccaga agacttggaa tcagcttatg cctttctatg cagattccaa      1320
     aacgctgaaa gaaccaaatc aaacaccaat aatgggttcg aaaaacatcc tagtgtcgac      1380
     aaaaatgtaa aaagggataa taaattttca caacctaaac accttgaaaa tagaccattc      1440
     aataacatga aaccatcttc agatcgtaca aaaattgttc ccatggacgt cgatcaatcc      1500
     ttacggtcca atatgagaaa caaaattttc tcgcatacag ccgaagaaga tgacggaaaa      1560
     acaatatcag aagaatccga ttcagacgaa gaaaccgata atgaagaaga tgtaaatttt      1620
     caaattactg caaacttaaa cccaccgagt taaacgcaat taacggacta cccttttaca      1680
     caacaaaatt aaatggttca aacatcaaac tcttagtaga cagcggagcg aacaaaaact      1740
     ttttaaatcc agaattagtt ccactaactc aaagagtgaa atgcgaaaca atcaccataa      1800
     aaaataaaaa tggtaagttc aaatcacaag aatgcacatt cataaccatt ctagataaaa      1860
     aattaaaatt ttaccttttc aaatgtcata attattttga cggaatactc ggatacgaat      1920
     cactctccga tatggaaaca ctaattgata caaaaaatca taaacttatt ctacccgatc      1980
     gtacaatcga cttagaaata agaacattag aacccccttc aattacatta aatgctaata      2040
     attctcaaat tataaagctt cctgtttctc aaacaaaagg aaacattttt cttccaaaag      2100
     acattcaaat aaaagatgca ataattcctt caggcgttta taaagcaaaa caaggatatg      2160
     ctaaagttct tgccaggaat tacggcgaca cattaacatt tcattggact aaaccagcaa      2220
     aaacatatga attagacaaa atgatcgaaa taaatcacat gagcacacac ccatataatg      2280
     atcatccgca aaattacata gcaaatctcg aaaatttaat tcgcaccgat catttaaaca      2340
     aagaagaaaa acataaactt ttcgaaattc ttaaacaaaa tctaggcatc atccatcaag      2400
     aaaaagaaaa actttcatgc accaccgcta ttagacatcg aataaaaact aaagacgata      2460
     tacccattca cacaaaaact tatagatacc ccaatattca taaagcagaa gtgaataggc      2520
     aaatcgaaga aatgattgct gacggtatta tccaacattc tatatcccca tggacatccc      2580
     caatctggat agtccctaaa aaatcagatg caagtggaaa ggagaaatgg cgcatcgtgg      2640
     ttgactatag aaaattgaat gaaaaaacga tcgatgatcg ataccctatt cccaatatag      2700
     aagaaatttt ggacaagtta ggtagaagca tgtacttcac tacacttgat ttaaaatccg      2760
     gctttcatca aattgaagtt gataaaaagg atagaccaaa aacagctttt agcacagaaa      2820
     aaggacactt cgagtttata cgaatgccct ttggcttgaa aaacgcacct gctacttttc      2880
     aacgagccat gaataatatt ttaggtgacc ttgtaggaag aaactgtctc gtatatctag      2940
     atgatattat tatttttggt aaatcactcc aacaacattt ggacaatttg aataaagtgt      3000
     tgaaaaaatt aattgaatca aatttaaagg ttcaattaga caaatgtgaa tttttaagaa      3060
     aagagtgtga attcttagga cacatcgtaa ctcaagatgg catcaaaccc aatccaaaca      3120
     aaatagaaaa aatattgcat tggcccatac caaaaacaac aacccacatt aaaggcttct      3180
     taggaatcct tggttattac agaaaattca taaaagattt ttcaaaactg accaaacctc      3240
     tcacaaaatg tcttaagaaa ggttctaaaa taacacataa tgacgaattt ataaattgtt      3300
     tcaatgattg taaacaaatg ctcactactg atccaatttt aaaatatcct gattttagca      3360
     gaaaattcat tttagaaaca gacgcaagtg acttcgccct tggcgctgta ctttcacaaa      3420
     aattcgaaga tggtaaggaa cacccaatcg cttacgcttc tagaacgctt aacgaaacag      3480
     agtgcaacta ttcagctacc gaaaaagagc tactcgccat tgtttgggca accaagcatt      3540
     tccgaccgta cattttcgga acagtttttg aaataagaac tgaccacaaa cctcttgttt      3600
     ggctaagaca gaaaaatgat ttaaatagaa gacttcttca ttggaaactg gccttggaag      3660
     aattcgaatt tgaaattaag tataaaaaag gtactcttaa tggaaatgca gatgcactat      3720
     cccgcataac ggaaaaccct gctttaacat ccgaattaaa tgcaaatact gcctctaaca      3780
     atactgacac tatgacgcaa cactcagcag atactaatga tgacgaattc atcccagcaa      3840
     ctgaaaaacc actaaatgaa tttagaaatc aaataatact agaagaaaat aataatgatt      3900
     ctcgagaagc aattacactt ttcggaaatt atcatagaat aacaataaaa acaccccttt      3960
     ttggaccagc tatgttgatc aacataatca aagaatatgc atctcccaaa tgtgttactg      4020
     gcatttgttg cagcgaaaaa atcttacaaa acttacaaat tatctacaaa aactatttct      4080
     ctcgcgcaaa atcgatcaaa ctattttgga caaaaacaat tttagaagat gtaactgatg      4140
     aaattgacca ggatttgatt attgaacgac aacataatgc aaaccataga ggaattattg      4200
     agaccaaact acatattgct agaaaatatt attttccaaa catgaaaact aaaattacta      4260
     aatttattaa catttgcaaa atatgtcaaa aagctaaata tgaaagacgc ccatataaac      4320
     aaaaatatca aattactgcc actcctaaaa aacctttgga aatcgttcat atggacatct      4380
     ttataattag tgataaacat tttctaaccc tttgcgataa gttctcaaga ctaaccatgg      4440
     cgattccttt acaatcaaga aacgctatac atatactaaa agcactaact caattcttcg      4500
     ctaacgttgg aagaccttgt ttgcttgtga tggaccaaga atgttcgttt aaatccacca      4560
     caatcaaaca atttcttgaa gaaaataatg tagaattcca ttatacaagt gttggtcaat      4620
     cctcttcaaa tggaacaatt gaaattgtcc atagaacaat aagagaattg cacaacataa      4680
     tctcactacg agattctaca aaaaatctat caactacttc aaaaattaat ttggcagtct      4740
     caatttacaa tgattctata cactctcaaa caaacatatc ccctaaagaa ctatttttcg      4800
     gcttcaaaaa cgaagatcct atccctgagg accttcaaga aagaattaaa caaaaagagg      4860
     aactttatag agtgtatgct acaaaacaaa aagaaaaaaa atccaaatac atagaaaaat      4920
     taaacaaaac acgagaagaa ccagaactat tcaaagacaa tgacacgatc ttcgaaagga      4980
     aaagaaataa tttaaaacac gaagaaaggt atcgtgaaac gaaagttttc gataacctag      5040
     ttacaaatat tttagaccga aatggaagaa aaattcataa atcaaaattg aaaaggaaac      5100
     gaaaaaccta acaaaccatt taagttcttt ctcatcctta cggaaatcac agctgaatac      5160
     tataaaaaac taaaaatgaa atttggaatg attcatttcc tcataatagt tttaacaaat      5220
     tcaaaactta taacagcaac aatttataga gactaacctt aactatattc agaatttagc      5280
     caataatatt agcctaacca accatcttaa ggacacctta gactataaaa tcctatcagc      5340
     ttataaaaaa tgaggaaata taagacctag aaaacaaaag agaggcataa taaatgcagg      5400
     aaatcgcaga tcagaaaaca cttagaacat tcagaattta gaacattcag aaaacaaaac      5460
     catatccaac attaacgctc aagttagaat taattccgaa atagaaaaat cagtgaacaa      5520
     aattacacaa actctaaaaa aaaaaaaatc gaaaatcaaa tgaataatca gataaaagat      5580
     cagatcagat caaatgaata atcgtaaaaa ctgaaataga acaagtaaat cttatcctga      5640
     acattgataa cattgtacaa ctgtagaaga catagaagaa tagacggatg taaaatttgt      5700
     aaccaagcat aaaaacacca ttttcaatgt taacgaagag tgcacgattt gcaacaaccc      5760
     acaaccgcta aacgacgagt gtatctcaaa tatcatcaga aatcatccat ctaaatgtac      5820
     caccaccacg agctccgagc atacgataat acgagaaatg aaaccaggag tcattctaat      5880
     cgataccacc cttggagtgc cagtcattga ttcatgttca aacagccaaa taatagcagt      5940
     acccacacta attgaaaccg gcaattgcac cgtaaaaatc ttaaatagca catttactgc      6000
     gcatattgat gtgttagacc aagaagacta cttcctaccc ttaactggca gcaaaacaga      6060
     aataactctt aacaagccaa gtatacaaga tctgcacaca atgcatatta gtaacataca      6120
     tcaactccat acaataacac tccgcttacg cacgcataca attgcaggag ggatattaat      6180
     tgttgttcta acaggctttc ttataactgc attttgcatc tacaaacaca aaaccaaaca      6240
     tgcagagaag aaaatgtcta ccgaagctat tcacaacatc atcccactgc aaacgtcggt      6300
     aagtcgatcg aggacgctcg acgtttaagg agggagg                               6337
//
ID   GYPSY39-LTR_AG repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY39-LTR_AG is an LTR of retrotransposon GYPSY39_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY39_AG; GYPSY lineage; GYPSY39-I_AG; GYPSY39-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-353
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY39_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 71-71 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY39-LTR is a long terminal repeat of GYPSY39_AG (its internal
CC   portion is deposited as GYPSY39-I_AG).
XX
SQ   Sequence 353 BP; 106 A; 85 C; 82 G; 80 T; 0 other;
     agttatgtac acatgcgcta cgcgctatga tacaggtgct gagtaagaaa acggtcgcaa        60
     gcgagccatc gatgttactc cacgcgcgga gtcaagttcc aacgggaact ccactggaag       120
     caggttccca cgaccaggtg tggtgtcgta tgttcagacg gaccgaggca acatgatcat       180
     cataaacgtg gacgacaacg tgaccggcaa acctggcagc accgaaaaca ccagcctagc       240
     taaatagtac cgaatccaga agttagcttt agtcttagtt tagcagttcg caaataaaga       300
     tccccagtaa tgtttttttt taaaacttac tccgggctat cgtaaacata att              353
//
ID   GYPSY3B_LTR repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   07-DEC-2019 (Rel. 24.12, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 1)
XX
DE   GYPSY3B_LTR is a long terminal repeat from GYPSY3 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY3B_LTR;
KW   endogenous retrovirus; GYPSY3_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-422
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 422 BP; 118 A; 115 C; 82 G; 107 T; 0 other;
     agttaactaa gttaaccgga ctgatcgtcc gctgaccagc accggtcaaa ttgctgacca        60
     agcatttggc cggaagctcg agcatagccg gcaaagctct gcactttggc agaggccgct       120
     atgaagctct tttctttgtt agctttaagc agttcgtttt ggacactcat aaaataaaga       180
     gccatcgctc attaaccaac aactccggca ttctgtcgtt aattttatat ttgatcatag       240
     caatctgagt ccctaggcca attgcattaa ggaagacagt catcttccca acgtaatcat       300
     cgtaactctc caagtggatt tatcaccctc ttcccctgta agagagacac catcagccaa       360
     ccggcaaatc atcggagact gcagcgaggg acccccctgc agcaccacca catttaataa       420
     tt                                                                      422
//
ID   GYPSY3C_LTR repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   08-DEC-2019 (Rel. 24.12, Created)
DT   08-DEC-2019 (Rel. 24.12, Last updated, Version 1)
XX
DE   GYPSY3C_LTR is a long terminal repeat from GYPSY3 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; GYPSY3_I; GYPSY3C_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-407
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (08-DEC-2019).
XX
DR   [1] (Consensus)
XX
CC   flanking LTRs are ~99% identical to each other.
XX
SQ   Sequence 407 BP; 115 A; 105 C; 90 G; 97 T; 0 other;
     agttaactaa gttaaccgga ccgctcgtcc gctgaccagc accggtcaaa ttgctgacca        60
     agcatttggc cggaagctcg agcatagccg gcaaagctct gcactttggc agaggccgct       120
     atgaagctct ttctttgtta gccttaagtt cagtttgaat ttgcatttat cagaataaag       180
     agcggcagct cgtcaactcc gactaagcgt cgtaaaatat attcttatta cttactctgc       240
     cagaccacaa ggctggcagt taaaagagga aagttcctct caacgtaaaa aacacacttt       300
     tgctccccgg actccacgga gcagccagcg aaggaagccc ttcacctctg gaggaatcct       360
     gacgacgaca gtatcgcaag acggtgcgat caatcattag attaatt                     407
//
ID   Gypsy3_DV-I repbase;    DNA;    INV; 8305 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   19-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_DV;
KW   Gypsy3_DV-LTR; Gypsy3_DV-I.
XX
NM   Gypsy3_DV-I.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8305
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1899-1899 (2012).
XX
RN   [3]
RP   1-8305
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (19-FEB-2022).
XX
CC   [3]: 97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3065..6271
FT                 /product="Gypsy3_DV-I_2p"
FT                 /translation="MKREHLLGYRGSRRKASQGMEREHLLGYRGSRRKASQ
FT                 GMEREHLLGYRGSRRKASQVMMGAPARLQREPKAGLPSHEKGVPARPSTEK
FT                 VRKRGVKSGPNRQPGEPKRWRIELQRQTSNGYGSGTAGTCKRKDGVGAMTR
FT                 IHTDIEGQERSPESSGHGVLSGIEMVPGWGDNGIEEADWPAGLDPELREFL
FT                 ESELALFEGLQGISHIAEHRIRLKDDKPLKQRYYPKNPAMQRVIDEQVDEL
FT                 IRANAIEPSRSPHSAPIVLVKKKTGEWRMCIDYRQLNAHSIPDAYPVPRIN
FT                 HILERLRHARFISTLDLKHGYWQIPMAADSRECTAFTVPGRGLFQWRVMPF
FT                 GLHSACATFQRALDTVIGPQMEPHAFAYLDDIVVIGATKTQHVENLREVFR
FT                 RLRAANLRLNRKKCSFFRERLVYLGHVICGEGIRTDPEKVEAIRNLRAPTN
FT                 CKELRQCLGMASWYRRFVPNFATQVQPLTALLKKGQKWAWEQEQEEALRQL
FT                 KESLTTAPVLACPDFSAKFVLQTDASEYGLGAVLTQTIDGQERVIAYASRK
FT                 LLKAEVNYSATEKECLAIVWSIRKLRCYLEGYRFDVITDHLALKWLNSIES
FT                 PSGRIARWALELQQFQFDVHYRRGKLNVVADALSRHPLETCQQAVVAEAPC
FT                 KWVARMRVRIAEEPAKFPDYTEENGQLYRHLGHRIDDEDYIPWKLCVGSGQ
FT                 RQRVLRECHDAPTAGHQGVRKTVARLAQRYYWPGMFRDAARYVKCCEDCQK
FT                 FKSEQLKPAGRMLTRQVAEPMAVLCADFVGPLPRSKHGNTMLLVFHDAFSK
FT                 WVELVPLRRATAAHLQTAFRERILSRFGVPRKFVCDNGVQFTSRSFKSFLG
FT                 SLGVEIQYTAPYCPQENPTERTNRTVKTMIAQFIEGHQSSWDELLPEISLA
FT                 VNTSVADSTGFSPAFLMQGREPRLPAALYDQVTPGSATSALDPRTKADRLK
FT                 EIFDIVHSNLQHASKDQGRHYNLRRREWRPSLDSMVLLRQHQLSNAAEGFA
FT                 AKLAPKFDGPYKVVKFISPNIVRLVKSDDRKKRVANISQLKPFYRKTTSDE
FT                 EDEDPGHANAHE"
FT   CDS           7617..8294
FT                 /product="Gypsy3_DV-I_3p"
FT                 /translation="MPALVPIARAETPDTIARRELEDAWFGQEGKAPSRKG
FT                 SFTVRQEGRDEVWSEEEDAVVTASSPKLSSPTQDSSPMALKTPTESELWDD
FT                 IVDLFDGIDGWDTSLDSVLEEEPDTEVDTVARSADVRVTPESHPKKPDTEV
FT                 EAIAHSADVGVKPEGPVEEPVPDSTPSGWKVFPLGTPLSSGVVDLIAREAR
FT                 IRRFRCRRTRFHVSDGESEYSVTLNAKGDVTVTCPK"
FT   CDS           join(1751..2641,2548..3291)
FT                 /product="Gypsy3_DV-I_1p"
FT                 /translation="MRYDGRSDPLGFLEDLEERAITYGIALDRMPRAMSEV
FT                 FCDRAARWFLSSGLRDVPWAVFRRDFLEFFLPPRYFERLEDEIRSRRQRVG
FT                 EAFKEYLIELRALMHHARYEPAQELHRIYENAAPEYRLYVRRQPYDFSTLS
FT                 QLTQLAVEYETVVRQRAEYSGSQPLGQGVSSSNSAEWARTAQSSGHLNPFR
FT                 SAPSGSGTTVVDNRVSTPPAATHAEVAHQMMSQEAGNGYDPRRACRRCAQE
FT                 GHFARECPNAPVLFCWVCGSRGRSSRECCRRAETGNGQRRRPDQDRVGANT
FT                 HGTQQSGVLPPRGDGKRATASSGPGSGRRQYTRNAAIGHPLKVDGGRIVAT
FT                 VEIGGRTMPATIDTGATRSFMSEDCVRKWTIRGRAEEIQARIRLADGSTLE
FT                 VEKALRVDASLGGKTISMTMLIMPSMLDHVILGMDFLGAMNTTIRCGEAEL
FT                 VLEAATTPGVRPGTSEESEEGRPRHEKGAPARLQREPEEGLPRHGKGAPAR
FT                 LQREPEEGLPRHGKGAPARLQREPEEGLPSHDGGTCSATEGAKGRPPKS"
XX
SQ   Sequence 8305 BP; 2210 A; 2093 C; 2541 G; 1459 T; 2 other;
     gcgcccgagc agggaccaag aggcgtttag gggtgtggca tgtcggggcg ggcggattaa        60
     agcccgcaag catgcccgaa taggtatttt ccaaaaaaaa aaataaaaat atatataggg       120
     tatttctagt cgggtatacc ctagagggaa ggtaacctag cagagagcaa gaaaatgaga       180
     aggtcatgta tgtgcgaaat atgaaaatag ggtattaagt agtccggtat accccagaga       240
     acattcctat accttgtgtt aggcatagcc agaaaatgaa cacgtgcagc tggtgagtga       300
     caaaaatgct agcagcaagc cggcaagtaa gataaagaga cgaaaacata acggtcggtc       360
     gtgagagtac agcgcgcgcg cgccagccgg gcgacgtcga gaccacgctc gcacacgggt       420
     gcccacacgc gcggcgcagt cgacgtcggc gtcgaaggac cgttaaggcg tcgcggcagc       480
     ggttgtacag tggggcgaat ccaactcacg cgcggtgaaa agttgaattc gtgagtacag       540
     ctgtcggggc agtgaagtgg tcacccttca agtgaatgtg aacaaaggga acaataagag       600
     cggaacaagt gccaaataaa aataagtgga taataataaa attttctttt ataaataaaa       660
     ttaattaaac aaaaataaat aaaaataagt ggataataat aaaattttct tttataaata       720
     aaattaatta aacaaaaata aataaaaata agtgaataat aataaaattt tcttttataa       780
     ataaaattaa ttaaacaaaa ataaataaaa atgagtggat aataataaaa ttaaaataaa       840
     ccgaggttca caataaagat aaaggcagcg accacataag gaacagccta aaagcggaaa       900
     agtgagaaaa gaaaattttg aaataccttt tgttgagttt ttttttttga aaaaaaaggg       960
     gggtaaatac ttttgtggaa tattgttttg tatttttgtt tggtgaaaga tataaagaca      1020
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaactaaag aagaaaacta aaaggaacca      1080
     aagtggctga gcaagatcgg cgtaaaagtg aaaagacacc aacaccaaga aaaggagaga      1140
     ggaatagtaa agggaccgac ggaaccccta gaacgggaag agagggaaac agcgacgtcg      1200
     actagcaagg aagtatacaa taaaggatgg aggcaggtga gtgccaaaac ccgggggtag      1260
     gcgtccgctg gattcaccag cgacgcaaag aggagttagt ggcgatcgcc caggagtttg      1320
     ggctsgaaaa ggaggggcgc gtggaggagc tacgtaagcg gctgtccacc tacgtgcagg      1380
     agggcggtca ttcgactggg atttgggctc ggctcgccga gctggaatcc cagtatgcta      1440
     aaactcttga gccgccatct tggggcgtcc cacccgactt tggtggacgg ccacggcaaa      1500
     agtcggacct gacctcagaa gctcccagct gtacgggctt ttgcaggcgc ccaccccgag      1560
     tttgaccgtc tcgggcgtgg aggcagttcc tgctctcggt ggaaatgaag accgccgagc      1620
     aactgcggtc aacgcagagg tggggaggtc ccctgttgaa ccgggtggtg gtccctgcta      1680
     cactaggccg caccatccat cggaggcgag gccacttccc aatgtcccgg agcaagttcg      1740
     gaagtggggt atgaggtacg atggacgctc cgaccccctt gggttcttag aggacctcga      1800
     ggagcgcgct atcacctatg gtatagccct cgaccgtatg cccagggcaa tgagcgaggt      1860
     gttctgcgat agggctgctc gttggtttct gagcagtggg ctaagggatg tgccgtgggc      1920
     cgtgtttagg agggatttct tggagttttt cttgccccct cgttacttcg agaggcttga      1980
     ggacgagatc cgatcccgga ggcagcgcgt aggtgaagcg ttcaaggaat atttgataga      2040
     gctgagggct cttatgcacc acgctagata cgagccggca caagagctgc atcggatcta      2100
     cgagaacgcc gctccggaat acaggctcta tgtgcgacgg caaccctacg acttttctac      2160
     cctatcccag ctaactcaac tggccgtaga atacgagacc gtcgtgaggc agagggcgga      2220
     gtactcaggc agccaaccct tgggtcaggg tgtctctagt tcaaatagtg cagagtgggc      2280
     gaggacggcg cagtcctcgg gacatctcaa tccgttccgg tctgctccca gcggatccgg      2340
     gacgaccgtt gtggacaaca gggtctccac cccacccgct gcaactcacg cagaggtggc      2400
     ccatcagatg atgagccaag aggccgggaa cggatatgat ccgcgacggg cgtgtcgtag      2460
     gtgcgcacag gaggggcatt ttgccaggga atgtcccaac gcccctgtct tattttgttg      2520
     ggtatgtgga agccggggcc gaagtagtcg ggagtgttgc cgccgcgcgg agacgggaaa      2580
     cgggcaacgg cgtcgtccgg accaggatcg ggtcggcgcc aatacacacg gaacgcagca      2640
     ataggacacc cactgaaggt ggacggtggc cggatcgtcg ctacggtaga gattggcgga      2700
     cgaacgatgc ccgccacgat cgataccgga gccactcgta gcttcatgag tgaggactgc      2760
     gtacgcaaat ggacgatccg gggaagagcg gaggaaatac aggcacgtat ccgcctggca      2820
     gatgggtcca ccctagaggt agaaaaggct ttgagagtag acgccagctt agggggaaaa      2880
     acgatcagca tgacgatgct catcatgccc tcaatgctgg accatgtaat cctgggtatg      2940
     gattttttgg gggcgatgaa taccacaata cgctgcggcg aggcggaact ggtcctagaa      3000
     gcagcgacga caccgggcgt gaggccagga acgagcgagg agtcggagga aggccgccca      3060
     aggcatgaaa agggagcacc tgctcggcta cagagggagc cggaggaagg cctcccaagg      3120
     catggaaagg gagcacctgc tcggctacag agggagccgg aggaaggcct cccaaggcat      3180
     ggaaagggag cacctgctcg gctacagagg gagccggagg aaggcctccc aagtcatgat      3240
     gggggcacct gctcggctac agagggagcc aaaggcaggc ctcccaagtc atgagaaggg      3300
     agtacctgct cggccttcga cggaaaaggt caggaaaagg ggagtaaagt ccggcccgaa      3360
     tcgacagcct ggagaaccca agaggtggcg catagagctg cagaggcaga cttctaatgg      3420
     ctacggaagc ggcacggcgg gaacgtgcaa gagaaaggac ggagtaggag cgatgaccag      3480
     aatccacacg gacatagaag gccaggagcg atcgccagaa tcgagcggcc acggagttct      3540
     atctggaatc gaaatggtcc caggatgggg cgataacggc atcgaagagg cggattggcc      3600
     agcgggtctg gacccagaac tgagggagtt cctggagtca gagctggctc tcttcgaggg      3660
     gctgcaggga atctcgcaca tcgcggagca ccgaatccgg ctgaaggatg acaagccgtt      3720
     gaaacaaagg tactacccca agaatccggc catgcagagg gtgatcgacg agcaagtgga      3780
     tgagttgatc cgggcaaatg ccatcgagcc gtcgcgtagt ccgcacagcg ccccgatcgt      3840
     cttggtcaag aagaagactg gcgagtggcg tatgtgcatt gactaccgac aactcaacgc      3900
     gcattccatt ccggacgctt atccggtgcc tcgtattaac cacatcctgg agcggttgcg      3960
     ccacgcccgg ttcatctcca ctctggattt gaagcacggg tactggcaga taccgatggc      4020
     agccgatagc cgggagtgta cggcgttcac agtccctgga agaggtcttt tccaatggcg      4080
     ggtgatgcca ttcggcttac actcggcgtg tgcgacattc cagcgcgctt tggatacggt      4140
     aatagggccg cagatggagc ctcatgcgtt cgcttaccta gacgacatcg tggtaatagg      4200
     agcgacgaaa acacagcatg tagagaattt gagggaggta ttccgccggc taagggcggc      4260
     caatctccgg ttaaatagaa aaaaatgcag cttcttccgg gagaggttag tctacctagg      4320
     acatgtaatt tgcggagaag ggatacggac cgatccggag aaagtggagg cgatacgaaa      4380
     cctgagggcc ccaacaaatt gcaaagaact gcgacagtgt ctcgggatgg cgtcatggta      4440
     caggcgtttc gtacccaatt tcgcgaccca ggtacagcca ctcacagcgc tcttaaagaa      4500
     ggggcagaaa tgggcatggg agcaagaaca ggaggaggca ttgcgtcaat tgaaggagag      4560
     cttgacgact gcccctgtgt tggcttgccc cgacttttcc gccaagttcg tcttgcagac      4620
     tgacgcgagt gagtatggcc tcggtgcagt gctgacgcag acgatcgatg gacaagagcg      4680
     ggtgatagca tacgcgagcc gaaagttgct gaaggccgag gtaaactatt ccgccactga      4740
     gaaagagtgc ctggcaatcg tgtggtcgat ccggaagttg cgttgctacc tagaagggta      4800
     ccgattcgac gtaataacgg accatctagc gctcaagtgg ctgaattcga tcgagagccc      4860
     gtcaggaagg attgcgcgat gggcattgga actgcagcaa ttccaatttg acgttcatta      4920
     tcgtcgaggg aagctcaacg tcgtggccga tgccctgtcg aggcatcctc tagagacctg      4980
     tcaacaagca gtggtggccg aggccccctg caaatgggtc gcgaggatgc gtgttagaat      5040
     cgccgaagag ccagccaagt tcccggatta caccgaggaa aacggacagc tatataggca      5100
     tttgggtcac cggatagacg atgaggacta catcccttgg aaactatgcg taggcagtgg      5160
     tcaacgccag agggtactgc gggaatgtca tgatgctccc acggccggac atcaaggtgt      5220
     cagaaaaacg gtggcgaggt tagcccagcg gtactactgg ccgggtatgt tccgcgatgc      5280
     cgccagatac gtgaaatgtt gcgaagactg ccaaaaattc aagagtgagc aactcaaacc      5340
     ggctggtcgc atgctgacga ggcaggtggc agagccgatg gcggtacttt gcgcggactt      5400
     cgtcggaccc cttccacggt cgaaacatgg aaacacgatg ctattggtgt tccatgacgc      5460
     tttctcgaaa tgggtggagt tggtccctct cagaagagcc acggcagcac acctgcaaac      5520
     tgcgtttcga gagaggattc taagtaggtt cggggtacct agaaagtttg tgtgcgacaa      5580
     cggggtacaa tttacgagtc ggagcttcaa gtcatttttg gggtccctgg gtgtagagat      5640
     ccagtatacc gccccgtact gtccgcaaga gaatcccact gagaggacta accggactgt      5700
     aaagaccatg atagcgcaat ttattgaggg ccaccagagt tcatgggatg aactcttgcc      5760
     cgagatctcg ctggcggtca acacgagcgt ggcagattca acgggcttta gtcccgcttt      5820
     cctgatgcag ggcagggaac ctcggttacc cgcagctctg tacgatcagg taactccggg      5880
     gtccgcaact agtgcgctcg accctaggac aaaggcggat aggctaaaag aaatttttga      5940
     tatcgtccac agcaacctcc agcacgcatc aaaggaccag ggcaggcatt acaacttgcg      6000
     gagacgagag tggcggccct cgttggactc gatggtcctg ttgaggcagc accagttgtc      6060
     caacgctgcc gaaggtttcg ccgcaaagtt ggcacccaaa tttgacggcc cctacaaagt      6120
     cgtcaaattc atatccccca atattgtgcg gctggtgaaa tcagacgacc gcaagaagag      6180
     ggtggccaac atctcacaat tgaaaccatt ctacagaaag acgacgagcg acgaagaaga      6240
     cgaagatcca gggcacgcaa atgcccacga gtaagcgaag gatgagagca acacccgtcg      6300
     cccaacgaaa ctattatgat taagcttaga taaaactaac attaacaaca taattcagaa      6360
     taggcatagt aaagtgtgag ccgcactgag agaatagggc attaacaaat aagtaaagag      6420
     taagttaacc aataagctga actttcagat ggaacccgaa gttatcgaca tatcgtcaga      6480
     cgaagacaac agcagcgggg acaccgagcc tttccccggg ccgggagccg caggccgtcc      6540
     gcgcgaccca cgccaggggc gtgagtacta tmgaagagaa cggcaagaag gaccgcctcg      6600
     ccagttccgc catacactat tctcccggcg gaccggcata atggagaggc tagacgggat      6660
     ggtcttgctg atggcagtcg aggtcacgac aatgttcgtg gaggcaccgt tcgcccggaa      6720
     ctcgccaccg tacgcggaag agcctgcatc tccgcccctc gcatcccact cggcacaatc      6780
     atcagagccg gcaaccccaa ccgcggccgg cgagatggac gaggaagagt ccgcaccgtt      6840
     cggaacggag gagcacacac caccagcgca ggacgtggag gcggtaggag aagagatatc      6900
     cccgtcggcc ggagacgcgg agtcgccacc gacggaggtg ccgaacggca cccgcgcaaa      6960
     cgacggggaa gcagacccgc tgagcctcga cccagaaccc ttagtgggag gggacccgtc      7020
     aacggaggac gagccggaat tccgtcgccg ctttgccacc caccgtctgg aggtagaccc      7080
     gggcagccag tttcccagga taacgctgcg gtacctacca aaagtccccg tggtagccaa      7140
     caaaccccgt ctgaaccccg caaagcgcga atgggggggt gccgaagaag gccccggcgg      7200
     aaagcgccga cgcagccgcc atcgtcgacg gagagccgcc aggggcgagc gtcgccggag      7260
     tggaggccat cgccgaccca gtcccgaggg agcatcctcg tcggccacga agaggcttcg      7320
     cacggagacc gagaagcccg aaggatcgca gcggtgcgtg ccgcgttcgc cccgcgagcg      7380
     ccaggagggt cctccccagc tcgggaagga taaccgccgc taccagatcg cttctcgagg      7440
     agggcatccc gaaccctggc cgataccgat tgcggtctgc cagatggtcg tggaggagca      7500
     ccaatctcag caccaaggac gcggcgaact cggccgtttc cccaacccgc gccgaggcgc      7560
     cagacgaaac ctttcctaag gaatcggagg aggagtggct cgacgacgag gacgagatgc      7620
     ccgcgctcgt gcctattgcc cgcgccgaga cacccgacac catcgcccgg cgggagttag      7680
     aagacgcctg gttcggccaa gaaggcaagg cgccatcccg aaaaggttcc ttcacggttc      7740
     gccaggaagg ccgggatgaa gtctggtccg aggaagagga cgcggtggtg acggcttcgt      7800
     cacccaagct ttcgagtcca acccaggatt cctcccccat ggctctaaag actcccacgg      7860
     agagcgagtt gtgggacgac atagtggacc ttttcgacgg catcgacggg tgggacacta      7920
     gcctggactc agtgctggag gaggaacccg acaccgaggt cgacacggtc gcccgcagtg      7980
     ccgacgtgag ggtcacaccg gagagccacc ccaagaaacc cgacaccgag gtcgaggcga      8040
     tcgcccacag tgctgacgtt ggggtaaaac cggagggccc cgtcgaggaa cccgtgcccg      8100
     attccacccc ctcaggctgg aaggtgtttc cccttggaac accgttgtcg tcgggcgtgg      8160
     tggacctaat cgccagagag gcgcgaatcc gccgcttccg gtgccgacgt actcggttcc      8220
     acgtgtccga cggggagagc gagtacagcg ttacgctgaa cgcgaaaggc gacgtgaccg      8280
     tcacctgtcc gaagtgaggg ggggg                                            8305
//
ID   Gypsy3_DV-LTR repbase;    DNA;    INV; 1210 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   19-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3_DV;
KW   Gypsy3_DV-LTR; Gypsy3_DV-I.
XX
NM   Gypsy3_DV-LTR.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1210
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1900-1900 (2012).
XX
RN   [3]
RP   1-1210
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (19-FEB-2022).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 1210 BP; 299 A; 262 C; 375 G; 274 T; 0 other;
     tgtgaggcgg ctaatgagac cagccacccc acagttttca cggcaaggag ccgtcatccc        60
     tttggccaaa ttacggcaag gagccgctgg cgggacaacg tattaatttt ctttagttat       120
     aagtattaat tatattaggt taagatctta gtgaaataag aggcaaggag ccatcagtaa       180
     tataagcagt tcgattagta gcaaagaggc aaggagccgc gaatattata attgatttaa       240
     atagtgagtt tgaatttaac cgccggccgc cgctgcaacc gtgcgttgtc gatcggttgc       300
     tcaacaccgt ctttgagagc gcaacttcaa ttcggcggcg aagagcgaaa gctccgaggc       360
     gaagttgcga aagctcgcgg cgaagttgag cagccgaagc gagcgcatgg cttgccggcg       420
     agcgtgccgg cacttgtgat tgaacgttaa gggtgagtag aagtgctgcg cgagataaac       480
     gaaatcatag atggtatagt ggagcgctag ggctccagaa aacagtgcgg cagggtttag       540
     cttaggattt acgataaggt cggaatgaat aatagtgaat aaagtgccaa cgttgtaatt       600
     atctagaaag tattggatta ttccctgttt cctggtaacc cggcttacct taacatcgga       660
     actaaccggt gttcgaccta acctcgaacg aggggcatgc gatacgagat tgtggctccg       720
     gggtgggcat tgccggttgg tgtttaggta gtggagttgg tgcgaggcca cggcccgcta       780
     gtgtagttgg tgcgaggcca cggcccgcta gcatagtggt acgaggccac ggcccggcag       840
     aaagatagag cgattaggca gtggagctgg tgtgaggcca cggcccgcta gtgtagttgg       900
     tgcgaggcca cggcccgcta gcatagtggt acgaggccac ggcccggcag agagataggg       960
     tgtttaggta gtggagttgg tgcgaggcca cggcccgcta gtgtggttgg agcgaggcca      1020
     cggcccgcta gcatagatgg tacgaggcca cggcccgatg gtgtaggtgt gtagaggtag      1080
     atctgggttt ggtttggtca ggatactccc ccccctttaa gccctctctc ccagcgaaat      1140
     tataaataac ttgtaactcg ctagacctgg taagactgag aattataccc cggccagaag      1200
     cttccttaca                                                             1210
//
ID   GYPSY3_I    repbase;    DNA;    INV; 6177 BP.
XX
AC   AC007477;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; env; internal portion;
KW   GYPSY3_LTR; GYPSY3_I.
XX
NM   GYPSY3_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6177
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY3_I.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   GenBank; AC007477; Positions   51186   57362.
XX
CC   GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.
CC   GYPSY3's long terminal repeat LTR is listed in Repbase Update as
CC   GYPSY3_LTR. Presumably, GYPSY3 has lost activity several million
CC   years ago since it is flanked by 4% divergent LTRs. Target site
CC   duplicates are 4 bp-long (TGTA).
CC   GYPSY3_I internal sequence encodes
CC   gag:
CC   MSNSFRQYRNSKPFASDSESEGDDSTENSVHKNTAVNAFVAYKMSLETEQIKVLIRALQE
CC   QALEGQRREADLRNTVQELASQLAAMQVAPVRAETPQIKVYQPVDITGEVRCEETLDAVK
CC   RLPDFMGTQETYVSWRQAAKAAYHMFRNYENSSRHYQAVVIIRSKVKGPADVVLSSFGTV
CC   LNFDAIINRLDFTYSDKRPIHVIEQELGTLRQGSMTLLQYYDEVEKKLTLLTNKATMSYE
CC   ASAAKVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVEFNHERYTFAT
CC   SFARSQEDRDRTQYPKVQERQQAPPQANPQGSAGKNLGSTEHKCTLLHVATGWLERTHRN
CC   LWKLTLHCPGCNHLTPRLTRNRSRPHLAARSRLKGKGSTMLPRPQITRLMPPQPPVQRLK
CC   STMMPS
CC   pol:
CC   DFVNGEIQELLKKGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNLRTVPDR
CC   YPMPNISMILGNLGKARYFTTLDLKSGYHQITLAERDREKTSFSVNGGKYEFRRLSFGLR
CC   NAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENAHVKHVDLVLKSLYDANIRVSAE
CC   KSRSFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDF
CC   ASIPRPISDILKGENGSVSRHRSRGIKVEFSEAQQRAFEKLRNILASEDVTLRYPDYKKA
CC   FDLTTDASAYGIGAVLSQEGRPITMISRTLCDREVNYKGAISHSLGASQVATLYTVKEIN
CC   IFTDHQPLTFAVSESNPNAKIKRWKARIDESGARMFYKPGKNNLVADALSRQQLHVVKNQ
CC   EPESCASTVHSELSLTYTIESTDKPVNCFQNQINLEEARSPWKRTFILFGNKKRHLINFS
CC   CKQTLLEELANTIIPNGVNAFHCDLHTLAKIQNEVVRQFPATEARKSRTRWSDNFRPQKL
CC   GETPIPGHVGEILHIDIFSTDRKYFLTCVDKFSKFAMVQPIPSRTIEDLKPPLLQLMNVF
CC   PKAKAIYCDIEPSLKSHTIVAMLENHFGVSISNAPPLHSVSNGQVERFHSTLVELARCLK
CC   IDKGINDTVELILLATARYNKSIHSVINKKPAEVMRADPDDPQSDVQEKIKNAQNVTRNR
CC   ENASRRNRVFQVGDKVLVKSNRRLGEERTIEAELGTTVPIKGRVVHKDNLR
CC   env:
CC   EYLLINHAYYRSFPTLLLCLLAVASAHVTDYTHANYIPVIDGQVLVE*EYAYVRHSANLS
CC   EYRRVIDETNGMVDMFPESHMKKLLSIDIAHLRDMLDSLSVHHRVARSLDFLGTALKVVA
CC   GTPDAEDFENIKFTEARLIDAHKSQIEINTKTQVRINELTDTINQLLKISKDKQIDTGHL
CC   YEMLLTRNRIIVMEHNLLLTITLAKINVVSPVFLDHTDLENVWGEEHTNTPIREILSVAS
CC   VKVLQSLNVLHFIIKFPKIVMACNKFTVFPVAHHNTVLRLEDNMVAECNGEIRTVKNCFR
CC   SLGATFCQLSSVSSCAQELHAGGMAHCNTQQSDLHPITYVDEGNIIINNNARVPKNSTLE
CC   AWHIATRSRATYILSHTSMKEILSSIIISDRHSPVLNISMKHEILSLPYLHRLSERNLEQ
CC   IRKFEQDVDGYRLGQIALIAGAIFCALICIGLTCQRAIRVKKSTAQLKEVLSKIGSAEDG
CC   LNLEGG
CC   Similarity/identity between polyproteins encoded by GYPSY3
CC   and GYPSY: gag = 45/65; pol (RT) = 68/81; pol (integrase) =
CC   55/74; env = 42/62(%). Nucleotide identity is as low as 66%
CC   for the pol-encoding regions and is not significant for the
CC   rest parts of GYPSY3 and GYPSY regions. GYPSY3_I and GYPSY2_I
CC   nucleotide sequences are 66% identical.
XX
FH   Key           Location/Qualifiers
FT   CDS           648..1925
FT                 /product="GYPSY3_I_1p"
FT                 /translation="MSNSFRQYRNSKPFASDSESEGDDSTENSVHKNTAVN
FT                 AFVAYKMSLETEQIKVLIRALQEQALEGQRREADLRNTVQELASQLAAMQV
FT                 APVRAETPQIKVYQPVDITGEVRCEETLDAVKRLPDFMGTQETYVSWRQAA
FT                 KAAYHMFRNYENSSRHYQAVVIIRSKVKGPADVVLSSFGTVLNFDAIINRL
FT                 DFTYSDKRPIHVIEQELGTLRQGSMTLLQYYDEVEKKLTLLTNKATMSYEA
FT                 SAAKVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVEFN
FT                 HERYTFATSFARSQEDRDRTQYPKVQERQQAPPQANPQGSAGKNLGSTEHK
FT                 CTLLHVATGWLERTHRNLWKLTLHCPGCNHLTPRLTRNRSRPHLAARSRLK
FT                 GKGSTMLPRPQITRLMPPQPPVQRLKSTMMPS"
FT   CDS           join(2224..3372,3318..3881,3802..4572)
FT                 /product="GYPSY3_I_2p"
FT                 /translation="NRPARRFAGQLKWGSEAEQIDFHTDFVNGEIQELLKK
FT                 GIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNLRTVPDRYPMP
FT                 NISMILGNLGKARYFTTLDLKSGYHQITLAERDREKTSFSVNGGKYEFRRL
FT                 SFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENAHVKHVDLV
FT                 LKSLYDANIRVSAEKSRSFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEP
FT                 KNVFEVRSFLGLASYYRCFIKDFASIPRPISDILKGENGSVSRHRSRGIKV
FT                 EFSEAQQRAFEKLRNILASEDVTLRYPDYKKAFDLTTDASAYGIGAVLSQE
FT                 GRPITMISRTLCDREVNYATNERELLAIVWALVKLRHFIRKGAISHSLGAS
FT                 QVATLYTVKEINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARMFYKP
FT                 GKNNLVADALSRQQLHVVKNQEPESCASTVHSELSLTYTIESTDKPVNCFQ
FT                 NQINLEEARSPWKRTFILFGNKKRHLINFSCKQTLLEELANTIIPNGVNAF
FT                 HCDLHTLAKIQNEVVRQFPATEARMPSTVIFTRWQKSRTRWSDNFRPQKLG
FT                 ETPIPGHVGEILHIDIFSTDRKYFLTCVDKFSKFAMVQPIPSRTIEDLKPP
FT                 LLQLMNVFPKAKAIYCDIEPSLKSHTIVAMLENHFGVSISNAPPLHSVSNG
FT                 QVERFHSTLVELARCLKIDKGINDTVELILLATARYNKSIHSVINKKPAEV
FT                 MRADPDDPQSDVQEKIKNAQNVTRNRENASRRNRVFQVGDKVLVKSNRRLG
FT                 EERTIEAELGTTVPIKGRVVHKDNLR"
FT   CDS           join(5042..5452,5416..5883,5768..6175)
FT                 /product="GYPSY3_I_3p"
FT                 /translation="MVDMFPESHMKKLLSIDIAHLRDMLDSLSVHHRVARS
FT                 LDFLGTALKVVAGTPDAEDFENIKFTEARLIDAHKSQIEINTKTQVRINEL
FT                 TDTINQLLKISKDKQIDTGHLYEMLLTRNRIIVMEHRTFCLQSHSQKLTNL
FT                 LLTITLAKINVVSPVFLDHTDLENVWGEEHTNTPIREILSVASVKVLQSLN
FT                 VLHFIIKFPKIVMACNKFTVFPVAHHNTVLRLEDNMVAECNGEIRTVKNCF
FT                 RSLGATFCQLSSVSSCAQELHAGGMAHCNTQQSDLHPITYVDEGNIIINNN
FT                 KARVPKNSTLEAWHIATRSRATYILSHTSMKEILSSIIISDRHSPVLNISM
FT                 KHEILSLPYLHRLSERNLEQIRKFEQDVDGYRLGQIALIAGAIFCALICIG
FT                 LTCQRAIRVKKSTAQLKEVLSKIGSAEDGLNLEGG"
XX
SQ   Sequence 6177 BP; 1792 A; 1546 C; 1345 G; 1494 T; 0 other;
     ggcgccccac taaggaaaca cacaacaaca cacacaaaca cacagattat gtaagtgagc        60
     gcctatctcc aaaccccaac tgcatttaaa caaagtttat aacatttaaa atatttctgc       120
     gataaataaa taatctgtat ttccatgaca atcctaatct ttgtatgtgt tgtgaattta       180
     aattatatta atgtatgaaa tttaaacatg gaattttaaa ttttgattga ctgtgcggat       240
     taaattattc tttggcactg tcgcagagat ttattgattt acaatttaca tcatgtgcat       300
     tatttcgttc cacttctgca tatgtctgca cactgtcgtt ccacttgaac ttgaattctc       360
     tccccacagc cgtctcgggc cctcctatcg ctgccccgac acccgataca gcagcgcatg       420
     ctttgctgta gcaatttttt gccttttata tatctctttg tctgtgctgc tacgatttgc       480
     ttgtcattta tatatttgtt tggcttagcg gatgcgagct ccccgcggct ccgctcaacg       540
     agccctcggc caatgttatt aaacgccgac tcagcccccg cgtcccctcg ccgaactaat       600
     acttcccttg ggcaatacga cttgagtatt tatatactca gcttctcatg agcaactcat       660
     tccgacaata taggaattct aaaccattcg ctagcgactc agagtcagaa ggcgacgatt       720
     ctacagaaaa ctctgtacat aagaacaccg cagttaacgc atttgttgca tataaaatgt       780
     cgctcgaaac ggaacaaatt aaagtcctca taagggcgtt acaagagcaa gccctagaag       840
     gtcaacgcag ggaggctgac ctgcgtaata cagttcagga acttgccagc cagctcgcgg       900
     ctatgcaggt tgcccctgtg cgggcagaaa ctccacaaat taaggtttac caaccggtag       960
     atatcaccgg agaagtccgt tgcgaagaaa cattggacgc tgtaaaacgc ctcccagatt      1020
     ttatgggcac acaggagaca tacgtctcct ggcggcaggc ggcgaaggcc gcttaccaca      1080
     tgttcagaaa ctatgaaaat agttcgcgac actatcaggc tgtagttatc atcaggagca      1140
     aagtaaaagg ccctgctgat gtagttctgt catccttcgg aactgtgcta aatttcgatg      1200
     caattataaa tcgcctcgat tttacgtaca gcgacaagcg cccgatacac gttatcgaac      1260
     aagagttagg cactctcaga cagggaagca tgacgctcct tcagtattat gacgaggttg      1320
     agaaaaaact caccttgctc accaataagg caaccatgtc ttatgaagcc tcggcagcaa      1380
     aggtgctgtg tgaaaagttc cgagatgatg ctttgcgagt tttcgtctcg ggactcaggc      1440
     gcaacctcac ggacgtgctg ttcgcggcaa aaccgaagga catgccctca gcactcgcct      1500
     tggcacagga ggtggaattt aatcacgagc gatacacctt cgcaacttcg tttgcaagaa      1560
     gccaagaaga tagggaccgc acgcaatatc ccaaagtgca ggagcgccag caggcccctc      1620
     cacaagccaa cccgcaggga agtgccggaa agaacctagg cagcacagag cacaagtgca      1680
     ctctgctcca cgtagcgacc ggatggctcg agagaacaca ccggaaccta tggaagttga      1740
     cccttcattg tccaggatgc aaccatctca cgccccggct tacccgaaat cgaagccggc      1800
     cacatctggc cgctcgatcc cgcctaaaag gcaaagggtc aaccatgttg cccaggcctc      1860
     agattacacg gcttatgcca ccgcagcctc cagtgcagcg gttaaagtcg acgatgatgc      1920
     catcctagag tatgactcgg atgccattaa ttttttaggg gtaagtccct gctacccgtc      1980
     atcagacgaa gagtagcggg gattgacatg aaactgctaa ttgcatggcc aaaaatttta      2040
     tctgaccttt tatggggttg aaaggcgtcc gcccggtgga gtccccattc gcagtccatt      2100
     cgattcatgg cgtgactaca atcgcaaaaa aatgttttat ctctattttt aaccttaaag      2160
     ctacattttc cttaccacca gatttgacct ccttcgacgc gatcattggc ctagacctat      2220
     taaaacaggc cggcgcgtcg ctttgccggc cagctcaaat ggggctccga agcagagcaa      2280
     attgactttc acactgactt cgtcaacggc gaaattcaag agctgctgaa aaagggcata      2340
     atccaaaagt cgaagtcccc ctacaataac ccaatatggg tcgtagacaa aaagggcacc      2400
     gacgatgctg gcaacaaaaa aatgcgtttg gtactggact ttcgcaaact gaacttgagg      2460
     actgtaccag acagataccc catgccaaat atctcaatga tattggggaa tctcggcaag      2520
     gccaggtact tcacgacact cgatctgaag tctggctatc atcaaatcac gctcgctgaa      2580
     cgcgaccgtg aaaagacatc attctcagta aacggaggga agtatgagtt ccgaagattg      2640
     tcattcggac tcaggaatgc tgcaagcatc ttccagagga caattgacga tattctgcga      2700
     gagcagatcg gcaagttctg ctacgtttac gttgatgacg tcatcatctt ttcagaagat      2760
     gaaaatgcgc atgtcaagca cgtagatttg gttctgaaga gcctgtacga tgctaacata      2820
     agagtatctg cagaaaagtc acgctccttt aagaaaagcg tgagcttcct agggttcatc      2880
     gtcaccaaca atggcgcggc gactgaccca gaaaaggtta aggccataaa ggaatttcca      2940
     gaacccaaaa acgtatttga ggtgaggtca ttcttgggct tagccagcta ttatcgatgc      3000
     ttcatcaaag atttcgcatc aataccaagg cccatttcgg acatactgaa gggcgagaac      3060
     ggaagtgtta gccgacacag gtccaggggt atcaaggtag aattttccga agcgcagcaa      3120
     cgtgccttcg agaaacttcg caacattttg gcgtctgagg acgtcaccct tagataccct      3180
     gattacaaaa aagcgtttga tctaacgaca gacgcttcgg cctacggcat tggcgcagtg      3240
     ctgtcccaag agggacgccc cattacaatg atctctagga cattgtgtga cagagaggtt      3300
     aactacgcta ccaatgaaag ggagctatta gccatagtct gggcgctagt caagttgcga      3360
     cactttatac ggtaaaagaa ataaacatct ttaccgacca ccaacctttg acgtttgcgg      3420
     tatcggaatc caatccgaac gccaagatca agaggtggaa ggcacgcatc gatgagtccg      3480
     gcgcaagaat gttttacaag cccggaaaaa ataatctcgt tgcagatgcc ctttcgaggc      3540
     aacaactcca cgttgttaaa aaccaggaac ctgagtcgtg cgcgtccacg gttcacagtg      3600
     agctttcgct cacatacaca attgagtcta cggacaaacc cgtaaattgc ttccagaacc      3660
     aaataaattt agaagaggcg cgctcccctt ggaaacgcac ttttatacta tttggaaata      3720
     agaagcgtca cttgattaac ttctcgtgca aacagacttt gctagaggaa ctagccaaca      3780
     ccattatccc taatggtgtg aatgccttcc actgtgatct tcacacgttg gcaaaaatcc      3840
     agaacgaggt ggtccgacaa tttccggcca cagaagctcg gtgaaacacc aatcccgggc      3900
     cacgtaggag aaatattgca catcgatatt ttctcgacgg ataggaaata cttcctcacc      3960
     tgtgtggaca aattttcgaa attcgccatg gtgcagccga tcccgtctag aaccattgag      4020
     gatctaaagc caccactgct tcaacttatg aatgttttcc ccaaagccaa agccatctac      4080
     tgcgacattg aaccatcact gaaatcgcac acaatagtgg ccatgctgga aaaccatttc      4140
     ggcgtcagca tctcgaatgc accgcccctc catagcgtct ccaacggaca ggtggaacgc      4200
     ttccacagca cgttggtcga gctcgctagg tgcctaaaaa tcgataaagg cataaatgac      4260
     acggtggagt tgatcttgct ggccacagcc agatataaca agtccatcca ctccgtcatt      4320
     aacaaaaaac cggccgaagt catgcgggca gatccggacg atccacaaag tgatgtccag      4380
     gaaaaaatca aaaatgccca aaacgtgaca cgaaatcgag aaaacgcctc tcggcggaac      4440
     agagtcttcc aggtcggcga taaagtccta gtaaagtcaa acagacgact aggcgaggag      4500
     agaactatcg aggcagaatt ggggaccaca gtcccaatta aagggagggt ggtccacaaa      4560
     gacaacctca ggtgacccaa acagagccca gttgcgtttc ccccggattt tcttttcatt      4620
     cttttcattt atagccactt ggcataagtt ttttatttgt ttttcattcg tagccaattg      4680
     gcataagttt tcattatttt tcgcttccca tagccacttc gcgtaagcct ttcttatatc      4740
     cttcattact catagccact tggcttaatt ttttaacgtt taatttactt cctcttattc      4800
     gtctattggt ggtgggcaac tccattccga gtatttatta atcaaccacg catattacag      4860
     gtcgtttcca acgcttctac tttgtctcct ggcggtggca tcggcccacg tcacagatta      4920
     cacccacgca aattacatcc ccgtcattga tggccaagtc ttagtagaat aagaatatgc      4980
     ctacgtcaga cactctgcta acctctctga gtataggcga gtgattgacg aaaccaacgg      5040
     tatggttgat atgttccccg agtcccatat gaagaagctc ctgagcattg acatcgctca      5100
     ccttcgtgac atgctcgact cgttgagcgt ccatcacaga gtggctagga gcctagactt      5160
     cttgggaact gcgctaaagg ttgtcgcagg gacacctgac gcagaagact ttgagaatat      5220
     aaagttcacc gaagcaagac taattgatgc acacaagagc caaatcgaaa ttaacaccaa      5280
     aacacaagtt cgaatcaacg aacttaccga caccattaat caacttttaa agatttcaaa      5340
     agataagcaa atcgacacag gccaccttta cgaaatgcta ttaacacgca atagaatcat      5400
     tgtcatggaa catagaacct tttgcttaca atcacactcg caaaaattaa cgtagttagt      5460
     ccagtctttc tggaccatac agacttggag aatgtttggg gcgaggagca caccaacacc      5520
     cccataaggg aaattttgtc cgttgcgtcc gtaaaggttt tacaatccct taacgtttta      5580
     cattttatta taaaattccc caagattgtt atggcctgta ataaattcac cgtcttccca      5640
     gtggctcacc ataacacggt attgaggtta gaagacaaca tggtggcaga atgcaatgga      5700
     gaaatccgta ccgtgaagaa ctgcttcaga tcactcgggg cgacattttg ccagttatct      5760
     tcggtgagct cgtgtgccca agaactccac gctggaggca tggcacattg caacacgcag      5820
     cagagcgact tacatcctat cacatacgtc gatgaaggaa atattatcat caataataat      5880
     aagtgacagg cactctcctg tccttaatat ctcgatgaaa cacgagatcc tgagcctccc      5940
     ataccttcac cgcttgagtg aaaggaattt ggagcagatc aggaaattcg aacaagacgt      6000
     cgacggatac cgactaggtc agatagcgct aattgcagga gcaattttct gcgctctcat      6060
     ttgcatcggt ctaacctgcc aacgagccat tagggtcaag aagtccacag cccaacttaa      6120
     ggaagtactc tccaaaatag ggtcggccga ggacggcctc aatcttgagg ggggagt         6177
//
ID   GYPSY3_LTR  repbase;    DNA;    INV; 398 BP.
XX
AC   AC007477;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   GYPSY3_LTR is a long terminal repeat from GYPSY3 retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY3_I;
KW   GYPSY3_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-398
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY3_LTR.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   GenBank; AC007477; Positions   50788   51185.
XX
CC   GYPSY3_I is a long terminal repeat from GYPSY3 endogenous
CC   retrovirus.
XX
SQ   Sequence 398 BP; 112 A; 107 C; 77 G; 102 T; 0 other;
     agttaactaa gttaaccgga ctgatcgtcc gctgaccagc atttggccgg aagctcgagc        60
     atagccggca aagctctgca ctttggcaga ggccgctatg aagctcttct ctttgtaagc       120
     tttaagcagt tcgttttgga cactcataaa ataaagagcc atcgctcatt aaccaacaac       180
     tccggcattc tgtcgttaat tttatatttg atcatagaaa tctgagtccc taggccaatt       240
     gcattaagga agacagtcat cttcccaacg taatcatcgt aattctccaa ctggatttat       300
     caccctcttc ccctgtaaga gagacaccat cagccaaccg gcaaatcatg ggagactgca       360
     gcgagggacc ccctgcagca cccccacatt taataatt                               398
//
ID   GYPSY4-I_AG repbase;    DNA;    INV; 4427 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   21-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY4-I_AG is an internal portion of the GYPSY4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   AP protease; GYPSY4-I_AG; GYPSY4-LTR_AG; GYPSY4_AG; Gyspy clade;
KW   gag; integrase; reverse transcriptase; GYPSY34-I_AG;
KW   GYPSY34-LTR_AG.
XX
NM   GYPSY4-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4427
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 77-77 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY4_AG is a family of autonomous Gypsy-like LTR
CC   retrotransposons.
CC   GYPSY4-I_AG, an internal portion of GYPSY4_AG, is flanked by
CC   GYPSY4-LTR_AG LTRs. The GYPSY4-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   less than 2% divergent from the consensus sequence. The A.
CC   gambiae
CC   genome contains about 10 copies of GYPSY4_AG.
CC   The consensus sequence encodes the 1423-aa GYPSY4_AGp protein
CC   (pos. 119-4387), composed of gag (zinc-finger, 264-379), protease
CC   (417-502), reverse transcriptase (pos. 628-797) and integrase
CC   (pos. 1145-1290) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..4387
FT                 /product="GYPSY4_AGp"
FT                 /translation="PACIRVYLCTCVYDTTPFSIMLRKKELRRALIVDVPD
FT                 TATVTQLRQLYASHEPVARSPRAAPPTTSATTPAPACANHQDAAILCLPHY
FT                 NGDDDFAHHENVANAAASTNNTTDAVSALPSAHGVAAALPRGPDDIEAQFE
FT                 KLRQQQQLAELRQKVHQLETQQPAALCVKDFEAFIEPLDADKNPNVIRWFR
FT                 DLERLFALYRVRDADKFFFTLRLLTGTAANVAKELVVTTYDELKKELIDNL
FT                 HVVATPESVYRQLRNRRLRPQESALHYLFDMQRIAGQASIADSELIPIVID
FT                 GLGSPSITSSLHFMPLTMDDFRKKLKLFESCRHLCTTQPPSADARATTNSR
FT                 MERPRPSQEPIRCFNCSRFGHLQNACPRPKRPPGGCFRCFQTGHVYRNCPE
FT                 RRANATVEGNTSSDEALATNQEVSLTFFHPSAKRTTLPCVRSLLDTGSPVS
FT                 FISDTIVPVKMLGPLSATEYCTMIKGPLYSRGKIDCTIRFKNHSVRHSFII
FT                 LPGIAWPVIIGRDLLNSLNIFLTYSSLTTSCITKPLSTELKEVDTILPEKL
FT                 DDAIRSICALDVAEADNELDLGKTLSLEQRSIVNSIVENSYLNYTSDVIPL
FT                 KHPMKINLTHDTPIFTKPRRLSYGERQQVKQIVDKLLAENIIRPSNSPYAS
FT                 ALVLVRKKSGEVRMCVDYRPLNKITVRDNYPLPLIETCLEHLCGKKFFSLL
FT                 DLKSGFHQVPMSEESIPYTSFVTPDGQFEYLKMPFGLRNAPSEFQRFINSI
FT                 LREFIDDGRIVVYLDDIIIASTDLSSHFSTLRSVLEKIKQNNLELRLDKCK
FT                 FVHEEIEYLGYKANFSGIQPSDRHIKALTNYPMPTNLKQLRRCLGLFSYFR
FT                 RFVPSFSCIAKPMTNFFRRTKYLTSIQIACMLLKPYVTNLCILLSFPYSTQ
FT                 NGKPNYTVTQVPLVLALFSFRNRMTISCTLLLTFPKPLQKTSPSYTVMSLK
FT                 LFPSFTLLSASTLMFMGSPLVTDCNSLVETLKNRNASAKIARWSLFLENYD
FT                 YTICHRSGTSMPHVDALSRTEAVGAIGEIDLDFQLQVAQTRDPSIEALKHR
FT                 LESEEVDGFLLQDGLVYRDIPDGQPQLYVPSEMVDNVIRHTHERIGHLGIN
FT                 KTFSKISQHYWFPHMKPTIDKFIKNCLKCIVYSAPHHTNARNMYSIPKEPL
FT                 PFDTIHIDHLGPLPSSSLRKKYILVVIDAFTKLTKLYPTSSTNAKEVCSAL
FT                 SQYMSYYSRPRRIVSDRATCFTSTLFEDFLESHNISHVLNATGSPQANGQV
FT                 ERVNRVLRPILSKLSDAPDQTDWVSKLRSAEYALNNTVHTSTNFCPSVLLF
FT                 GVEQRGKVPDELAEYLDEKFDRASRDLEAIRAKALENIEESQRKNEEYFSK
FT                 KHKPPQCYKEGDLVAIRYSDTTDSGNKKLNPKFRGPYVIHKVLPHDRYVVR
FT                 DVEGCQLTQLPYDGVLEANKLRRWTESSD"
XX
SQ   Sequence 4427 BP; 1170 A; 1185 C; 898 G; 1174 T; 0 other;
     tctcagaagt gggattacca acaaaaatcg cctacaaaac cgcctgcaag ccgcctaacc        60
     agcctgtatc cgtgtgtacc tgtgtacgtg tgtgtatgac acaacgccat tttccatcat       120
     gctgaggaaa aaagaacttc gtcgggcgct tatcgtcgac gtgccggata ccgctaccgt       180
     cacacaactc cgacagcttt atgcctccca cgagccggtc gctcgttccc cccgtgcggc       240
     gccgcccacc acctcagcga cgacaccggc tcccgcttgt gcaaaccacc aagatgccgc       300
     cattttgtgc cttccacatt acaatggcga cgacgatttt gcgcatcacg aaaatgttgc       360
     gaacgctgcc gcttcgacga acaataccac tgatgccgtt tccgcccttc cttctgccca       420
     tggtgtggcc gccgcccttc cccgcggccc tgacgacatc gaggcccaat ttgagaagct       480
     gcgacagcag cagcagctag ctgaattacg ccaaaaggtg caccaacttg aaacgcagca       540
     gccagccgcc ctttgcgtaa aggactttga agctttcatc gagccactcg acgccgataa       600
     gaaccccaat gtcatccgat ggttccgcga cttggagcgt ctctttgcac tttaccgagt       660
     gcgcgatgca gataaatttt tcttcaccct tcggctcctc accggcacag ccgctaacgt       720
     cgcaaaagaa cttgttgtca ccacttatga tgagttgaag aaagagttga tcgacaatct       780
     tcacgtcgtt gctacgcccg aatctgttta tcgccaactc cgtaaccgtc gattgcggcc       840
     ccaggaatcc gccctgcatt acttgtttga catgcagcgc atcgcaggcc aagccagtat       900
     cgccgattca gaactgatcc cgatcgtcat cgacggcttg ggaagcccgt caattacgtc       960
     gagtctgcat ttcatgcctc ttacgatgga cgacttccgg aagaaattga aacttttcga      1020
     atcttgccgt catctttgca ccacccagcc cccttccgct gatgcccggg ccacaacgaa      1080
     cagccgtatg gaacggcccc gcccatcgca ggaacccatc cgctgcttca actgctcccg      1140
     attcggacac cttcagaacg cgtgcccgcg gccgaagcgc ccacccggcg gatgttttcg      1200
     ttgtttccag actggacacg tctaccgtaa ctgccctgaa cgtcgggcca acgccactgt      1260
     cgagggcaat actagttcgg acgaagctct cgccacaaat caagaggtga gtttgacatt      1320
     tttccaccct tctgctaagc gtaccaccct tccctgcgtt cgttcccttc tcgacacagg      1380
     aagtcctgtg agcttcatta gcgacacgat agtaccagtt aagatgctag gacctctttc      1440
     cgctaccgaa tactgcacta tgattaaggg accactttac tctcgaggaa aaatcgattg      1500
     tactatccga tttaagaatc attccgttcg acactctttt attatattac ctggaattgc      1560
     gtggccagtc attatcggtc gcgatttact gaactcactt aatatttttc ttacgtattc      1620
     atctcttaca acttcatgta ttactaaacc tctatcgacg gaacttaaag aagtagatac      1680
     gattcttcca gaaaaattag acgatgctat taggagtatt tgtgcgctcg atgtggctga      1740
     agccgataat gaactggatt taggaaaaac actatctttg gaacaacgtt caatagtcaa      1800
     ttctattgtt gaaaattcat acctcaacta tacttcagat gttataccgc tcaaacaccc      1860
     tatgaaaatc aatctgactc atgatacacc aatatttact aagccgcgaa gactctctta      1920
     tggtgaaaga cagcaggtta agcaaattgt tgataaactg ttagcagaaa acatcatccg      1980
     gcccagtaat tctccttatg cttctgcgct tgtcctcgtt aggaaaaaga gtggcgaggt      2040
     tcgtatgtgt gtggattacc ggcccctcaa caaaattaca gttcgggaca attaccccct      2100
     accccttatc gaaacttgtt tggagcatct gtgtggaaaa aaattcttca gtttgctgga      2160
     tttgaaaagc ggattccatc aagtcccaat gagtgaggag tctatcccct acacttcttt      2220
     tgtgacccca gatggtcaat ttgaatatct gaaaatgcca ttcggtcttc gtaacgcccc      2280
     ttccgaattc caacgtttta ttaattctat cttaagggaa ttcattgatg atggcagaat      2340
     agtagtgtac ctcgatgaca tcatcatcgc ttctaccgat cttagctctc acttcagtac      2400
     ccttcggtcc gtattagaaa agattaagca gaataattta gaacttcgtc ttgacaagtg      2460
     caaatttgtc catgaagaaa tagaatactt gggctacaaa gctaactttt ctggaattca      2520
     gcctagtgat aggcacatta aagcacttac taattaccct atgcccacta atttaaagca      2580
     actcagacgt tgtcttggtc tgttttcata cttccgacgg tttgttccat ctttctcttg      2640
     catcgctaaa cctatgacaa acttcttcag aaggacgaag tatttaactt cgattcaaat      2700
     tgcgtgcatg cttttgaaac cttacgtgac aaacttgtgc attctcctat cctttccata      2760
     ttcgacccaa aacgggaaac cgaattacac tgtgacgcaa gttcctttgg ttttggcgct      2820
     attctccttc agaaacagga tgacaataag ttgcaccctg ttgcttactt ttccaaaacc      2880
     acttcaaaag acgagtccaa gttacacagt tatgagcttg aaactctttc catcatttac      2940
     gctcttaagc gcttccacac ttatgttcat gggctcccca ttagttactg actgcaactc      3000
     tctggtcgag acccttaaga accgtaatgc ttccgctaag attgccaggt ggtccttgtt      3060
     tctggaaaat tacgactata ccatctgtca tcgctcaggc acttctatgc cccatgtcga      3120
     cgcactgagt cgcaccgaag ctgtgggtgc catcggtgag attgaccttg acttccagct      3180
     tcaagtagct cagacgcgtg acccatctat cgaagctctc aaacatcggt tagaatcaga      3240
     agaagttgac ggattcttac ttcaagatgg gcttgtctat cgcgacatac ctgatggtca      3300
     acctcaattg tatgtccctt cggaaatggt cgacaacgta attagacaca ctcacgagcg      3360
     aattggccac ctgggcataa acaaaacctt cagcaaaatc agtcagcatt actggttccc      3420
     ccacatgaag cccactatcg acaaattcat taagaactgc ctcaagtgca ttgtttattc      3480
     tgcacctcat catactaatg cccggaatat gtacagcatc cctaaagagc ccttaccctt      3540
     tgataccatc catattgacc atttaggtcc gctccctagt tcttccttac gcaagaagta      3600
     tatacttgtt gttatcgatg ctttcactaa attaaccaaa ctttacccaa cctcctcaac      3660
     taatgcgaag gaagtgtgtt ctgccctttc ccaatatatg tcttactata gccgccctag      3720
     gcggattgtt agcgatcgag ctacttgttt cacctcaacc ttgtttgagg acttcttgga      3780
     atcgcataac attagccatg tcctcaacgc caccggatcc ccacaagcca atggacaggt      3840
     agaacgggtg aaccgtgtgt tgcgtcctat ccttagcaaa ctatctgatg ctccagacca      3900
     gaccgattgg gtatccaagt tgcggtcagc cgaatacgct ttaaacaata ccgtccacac      3960
     atctacgaac ttctgcccct ctgtcctact ctttggtgtc gagcaacgcg gtaaagttcc      4020
     agacgagtta gccgaatacc tggatgagaa atttgatcga gcctctaggg acttagaagc      4080
     cattcgggct aaagcgttag aaaacataga agagtctcaa cggaagaatg aggaatactt      4140
     tagcaaaaag cacaaaccac cacagtgcta taaggaaggt gacttagtgg ctatacgtta      4200
     ctctgatacg accgatagcg gtaataagaa gctcaatcct aaattcaggg gaccttacgt      4260
     catccataaa gtgttgcccc atgataggta cgtggtacgc gatgtagaag gatgtcaact      4320
     cacacaacta ccctacgatg gggttctaga agcgaataag ttgcgacgtt ggaccgagtc      4380
     cagtgattag gaaattgagg gcaatttatt gttcaggata gccgagc                    4427
//
ID   Gypsy4-I_AP repbase;    DNA;    INV; 4863 BP.
XX
AC   Contig7751;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4AP;
KW   Gypsy4-I_AP; Gypsy4-LTR_AP.
XX
NM   Gypsy4-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4863
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 443-443 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3714-4187] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..3059
FT                 /product="Gypsy4-I_AP_1p"
FT                 /translation="MGNSDPNNPNGEEFNANQLVRALLEQNRLREEQMDKI
FT                 INKLMDQRSVTQQSSPMLPIISQTVPVFNGETGDTDVAKEWLNALKAVALI
FT                 NKWSDTCTLETGRSHLDGAAKNWYLSHMSELDSFAKFTTAFEETFTSKESV
FT                 TETWKRMNERVQKRDETVFAYFHDKVRMCRRLGLSAIEIKKMICVGLYSRE
FT                 LSSALLSNGHTLETELLADIRMFNDVDLNRSERFRNTSQPKKGPKPITEKE
FT                 QASTKPRGVSKSVDTVPPRDGPRCYNCQMFGHVARDCTQPRKPFKCGKCKQ
FT                 EGHSSKYCQSGKTDVNLVSTRPKNSAVLYIKEVRINDHKDLIHGLVDTGSA
FT                 VSIIKKSIAERFGLTINTKKINMWVYGKAQPVISKGETEANICVDEVKEHV
FT                 KLVVVNDELQQYDIIIGRSFTELDNVTFIKTSDQLIFGYGMKFPYQETDVP
FT                 GQIVHRHAVRIKCETEIMPAESAKVVEVLADNETIEVMIINDGESELRLHR
FT                 GDHVGVLREQHPTRQSIIAPRTPITAKMVQHGPDFNQEEVNELVKLLNDYR
FT                 CCFAFNLGELGCTTEIQMDIVDNGQPVVCKPYRASASERETISRIVREWKD
FT                 EGIVTETKSSYASPVLLVSKKDGDARLVVDYRKLNSQTVRKVFPTPNLDEH
FT                 LEQLHGAKMFTTLDLASGYLQVPLTEAAKEKTAFITPSESGQFERMVFGLI
FT                 NAPYEFSRLMQRVLHPLKDKVAMWYLDDILIPSTSFKDMLHRLQQVLDALK
FT                 GAKLTLKLSKCYFGYPEVTYLGFMLSVEGVRPGEQKIVAVKEFPKPNNKHE
FT                 VRRFLSLCGFFRRFIPHYAMLAQPMSDLLKDSVSFEWTTTQEAAFNELKNR
FT                 LISKPVFQVFNPSAETELHCDASSMGLSGMLLQRGRDKKLHLVHAVSKKTT
FT                 SAERNYHSSKQELMAVVWSMSRL"
FT   CDS           3516..4694
FT                 /product="Gypsy4-I_AP_2p"
FT                 /translation="MRKGIVIRFHDLAGHFAVDRTVNKIKERYYFPRMRRY
FT                 VQVHIRCCPECVLTKIPRGRQPGELHPIKPGKRPFEIINIDHVGPFIKSTK
FT                 GNSYILVLIDNLTKYVQLFPVKSCGTEGVIHSLQQFIVTFGIPKQIISDRG
FT                 TAFTSKAFDAFCTQYGVRHILNSVRHPQSNGQVERVNSTLVPVMQSTMENN
FT                 RTWDKTVKDIECHLNNAHNKTIGDTPFHVLYGYYPSFKDGTLRHATTVETW
FT                 DSSTQIQAKVRERIAREHDMWKLRYDSKHVKPVQYQVGDVVFIRRPTEATG
FT                 ESTKLQVKYRGPLVITKVLPNDVYRVSELHTEDKRCYSTTVHVTHIKGYNI
FT                 PEDEEEPNETESIPTEEEEDQQEESTTNHQQVEKSKRDRRPPGWHATYQM"
XX
SQ   Sequence 4863 BP; 1649 A; 894 C; 1131 G; 1189 T; 0 other;
     tttcagaagt gggatttgac cgtaaatccg cctaaagtcg agtgtgttcg aaccgccgag        60
     tcacgaggtt ctagcatcta gttacgaaca taacctcaaa gtagagtaac gttaaccact       120
     aaccgtcaac ctgataacgt tagagaacgt aatgattgcg gtatcataag ttgttgtgta       180
     atcaagaaga tagagataaa tgataagtaa acaaaccgcg tgtgtgtatc gtcatcgcgt       240
     agagaattgt gatctgtgat attttcgaaa acaatacaat ggggaatagc gatccaaaca       300
     acccgaacgg ggaggagttc aatgcgaacc aacttgtgcg tgcgcttctt gagcagaaca       360
     ggctgcgaga agagcagatg gacaaaatca ttaataagtt gatggatcag agaagcgtga       420
     cacaacagtc ttcaccgatg ctaccaatca tttcgcaaac ggtaccagta tttaatggag       480
     aaaccggtga tactgacgta gctaaggaat ggcttaacgc gcttaaagcc gttgcattaa       540
     taaacaaatg gtctgataca tgcacactgg aaactggtcg ctcgcatttg gatggagccg       600
     ccaaaaattg gtatttaagt catatgagtg agttagatag ttttgcgaag tttacgactg       660
     cgtttgaaga aacattcact agtaaagaaa gtgtaaccga gacctggaag agaatgaatg       720
     aacgagtaca aaaacgggat gaaacggtat ttgcgtactt ccatgacaag gtcagaatgt       780
     gtaggcgatt aggattatca gccatagaga taaagaaaat gatttgtgtt ggactatatt       840
     cgcgcgaatt atcatccgca ttacttagca atggacacac acttgagact gaattattgg       900
     ctgatatccg aatgttcaac gacgtggatc tcaaccgaag tgagaggttt cgcaacacgt       960
     cacaaccaaa aaaaggtcca aaacctataa ctgagaagga acaagcgtcg acgaagccca      1020
     ggggagtcag taaatcggta gacaccgtac ccccacgtga cggtcctcgc tgctataatt      1080
     gtcaaatgtt tggacacgtg gcccgagact gcactcaacc acgtaaacca tttaagtgtg      1140
     gtaaatgtaa gcaagaaggg cacagtagta agtactgtca aagcggaaaa actgatgtta      1200
     atttagtcag tactcgacca aagaatagtg cagtacttta tattaaggaa gtacgaataa      1260
     atgatcacaa agacctgata cacggattgg tggatacagg tagtgcggtt tcaataataa      1320
     agaaatctat tgctgaacga tttggtctga caatcaacac caagaaaata aacatgtggg      1380
     tatatggtaa ggctcaaccg gtaattagta aaggcgaaac tgaagcgaac atatgtgttg      1440
     atgaagtgaa ggaacatgtc aagttggtcg tagttaatga tgaattacaa caatacgaca      1500
     taataatcgg acgatccttt accgaattgg ataacgtcac ctttattaag acgagcgatc      1560
     agctgatttt cggctatggt atgaaatttc cgtatcaaga aactgatgtt ccaggacaga      1620
     tagtacatcg acatgctgtg agaataaaat gtgaaaccga gataatgcca gcggagagtg      1680
     ccaaggtagt agaagtactt gctgacaacg aaacaatcga agtaatgatt ataaatgatg      1740
     gtgaaagcga gttgaggtta caccgcggcg atcatgttgg ggtactgcgt gaacaacatc      1800
     cgacaagaca atcaattatt gcaccgagaa caccaataac tgcaaaaatg gtgcagcatg      1860
     gtccagactt caatcaggag gaagtgaatg aactggttaa attattaaat gattatcgtt      1920
     gttgttttgc gtttaattta ggtgaactgg gctgtaccac agagatccag atggacatag      1980
     tcgacaacgg acaaccggtg gtgtgcaaac cgtatcgtgc cagtgcttcg gaacgcgaaa      2040
     ctataagtcg tatagtacgt gagtggaagg acgagggcat agtaaccgaa actaaatctt      2100
     catacgcgtc acctgtgcta ttggtcagta aaaaggatgg tgacgctaga cttgttgtgg      2160
     actaccggaa gttaaattca caaactgtgc gtaaggtatt cccaactcct aatctggatg      2220
     aacatcttga gcagctgcat ggtgccaaaa tgtttacgac tttggatctt gcgtcaggat      2280
     acctccaagt tccacttact gaagcggcaa aagaaaagac agcattcatc acacccagtg      2340
     aatctggaca attcgagaga atggtgtttg gcctaatcaa cgccccatat gagttttcga      2400
     ggttgatgca acgagtcctg caccctttga aggacaaggt agcaatgtgg tatcttgatg      2460
     acattcttat accatctaca tcgtttaagg atatgttaca tcgattgcaa caagtgctgg      2520
     atgcactgaa aggggcaaaa ttaacactca agttaagtaa gtgttacttt ggctatccag      2580
     aggtaacata tctcgggttc atgctgtcag ttgaaggcgt acggccagga gaacaaaaga      2640
     ttgtggcagt taaggagttc ccaaagccga ataacaaaca tgaagtacgt cggttcctca      2700
     gtttgtgtgg gttcttccga agatttatac cacattatgc gatgctagca caacctatga      2760
     gcgatttact aaaggatagt gtgtcatttg agtggacaac gacacaagaa gcagcgttca      2820
     atgaactgaa gaacaggttg atcagcaagc ctgtatttca agtgtttaac ccaagtgcag      2880
     aaacggaact acactgcgat gcaagtagta tgggtctaag cgggatgtta ctacaacgag      2940
     gcagagataa aaaattacat ttagtacacg cggtatctaa gaagacaact tcagcagaac      3000
     ggaactacca ctcgagtaag caagaattga tggctgtagt atggagtatg agtagactat      3060
     gaccatacct gatcggaatt aagttcttag tgattacaga ttgccaagca atcgttcacc      3120
     tcaacactca gaaaaccctg aatccacaga tagcacgatg ggcaacattg ttgagtgaat      3180
     ataactttga catcaagcat cgcccaggtg cgaaaatgaa tcatattgat gctcttagtc      3240
     gggccccagc tagtatgtct caagatacag aaacagaact attggatgaa catttagagg      3300
     tgtttatcac aatgaccgaa gaagagcagg tgatatcaat gcaacgcacc gacaccagac      3360
     ttaagggaat aatggagatt cttagtcgag aaccgtcggg acgttctgca gttgataatg      3420
     aaattgttaa aaactatcac atggaaaagg ggatattata tagaacagtt atcgtcgaag      3480
     gtgaagctag acagctgtga gtagtaccca atgctatgag aaaaggaata gtcataagat      3540
     ttcatgatct agcaggtcac tttgcagtag accgaactgt gaacaaaatc aaagagcgtt      3600
     actattttcc acggatgcgt cggtatgtgc aggtgcatat caggtgctgt cctgagtgtg      3660
     tgttaaccaa aatacctcga ggtagacaac caggtgagct gcaccccata aaaccgggta      3720
     agcgtccgtt cgagataatt aatatagacc acgtagggcc ctttatcaaa tcaacaaagg      3780
     gaaacagtta tatcttagtg ttaattgata atttaacaaa gtatgtgcag ttatttccag      3840
     tcaaaagttg cggtacagag ggagtgatcc atagccttca acaatttata gtgacgtttg      3900
     gtataccgaa acaaataatt agtgacagag ggacagcatt tacatctaaa gcatttgacg      3960
     ctttctgtac acagtatggt gtgagacaca tactaaattc ggtgagacat ccacaatcga      4020
     atggtcaggt ggaacgtgta aacagtacac tagttccagt tatgcaatca acgatggaga      4080
     acaacagaac ctgggataaa acagtcaagg atatagagtg tcatttaaac aacgcgcata      4140
     acaaaacaat aggtgatacc ccatttcatg tactttacgg atattatcct agttttaaag      4200
     atggaacgtt gcgccacgct acaacagttg agacgtggga ctcaagtaca cagattcaag      4260
     ccaaagtaag agagcgcata gccagagaac atgacatgtg gaaactaaga tatgattcta      4320
     aacatgtcaa accagtgcaa tatcaagtcg gagacgtggt gttcatccgc cgacctactg      4380
     aagctacagg agaatcaact aagctacaag tgaagtatcg aggaccattg gtgatcacta      4440
     aggtgctacc aaatgatgta tatagagtgt ccgaactaca tactgaggat aagaggtgtt      4500
     actcgaccac tgttcatgtg acacatatca agggttacaa tattccagag gatgaagagg      4560
     aaccaaatga gaccgagtca ataccaacgg aggaggagga agaccaacaa gaagaatcaa      4620
     ccacaaatca ccagcaagtg gaaaaatcca aaagagatag aagaccacca gggtggcatg      4680
     caacatacca gatgtaaata taatcactat gaacagaaag aactgtctta attgttacta      4740
     ctcactaggt tatataaata ttgtaatatt gttatgttaa gagtttaatg aaaatttgtt      4800
     tttttttaaa ttgatggaaa tgttaatatt aagtggggac ccttaattgt caagataccc      4860
     gaa                                                                    4863
//
ID   Gypsy4-I_Dmoj repbase;    DNA;    INV; 5106 BP.
XX
AC   scaffold_6541;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dmoj;
KW   Gypsy4-LTR_Dmoj; Gypsy4-I_Dmoj.
XX
NM   Gypsy4-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5106
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1044-1044 (2009).
XX
DR   Genome; scaffold_6541; Positions 1443204 1448309.
XX
CC   Positions [2067-2489] - Reverse transcriptase
CC   Positions [3537-3755] - Integrase core
CC   'AGTT' target site duplication
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1380..3929
FT                 /product="Gypsy4-I_Dmoj_1p"
FT                 /translation="MKVVVALAEKVVQMTVLIMPTMLDHIILGMDFLCAVG
FT                 ATLRCGDTELTMRMEETSKESSRVENEGSLARRSSYANVNPEAPSWTPPSK
FT                 KRRARADAESQRAPDICARADRKGDEQLERKLGEHPTMRDATDPEEERDAR
FT                 PALGAVVWPEDLDPSLKEFLETELALFEKLEGVSHIDKPLKQRYYPKNPAM
FT                 QKIINEQVDELFRVGAIEPSRSPHSAHIVLVKKKTGEWRMCVDYWQLNAHS
FT                 IPDAYPVPRINHILKRLRQARFISTLDLKSGYWQIPMAADSREYTAFTVPG
FT                 RGLFQWRVMPFGLHSAGATFQRAPDTVIGPEMEPHAFAYLDDIVVIGASKE
FT                 EHTANLREVFRRLRAANLKVNRKKCSFFREKLAYLGHVISGEGICTDPAKV
FT                 EAIRDFPTPKNLKELRQCLGMASWYRRFVPNFASLVQRMTRLLKKGQKWVW
FT                 TEEQEDALQKLKGSLTTAPVLACPDFSEKFVLQTDASDCELGAVLTQEIEG
FT                 QERVIAYASRRLTKTEVNYSAIVWAIRKMRCYLEGYRFDVITDHLALKWLN
FT                 SIESPTGRIARWALELQQFQLDVRYCRGSLNVVADALSRQPLENCQQAVEE
FT                 CLPCKWIAKMRESIANDPEKFRDYVEENGQIYRNLGYRTDDEDYIPWKLCV
FT                 SEGQRSRVLHECHDAPTAGHQGVRKTAARLAQRYYWPGMFRNAAKYVKRCE
FT                 TCQKFKCVQQKPAGQKLTRQVAEPMAVLCADFVGPLPRSKRGNTMLLVFHD
FT                 AFAKWVELVPLKKATTALLQLAFRERILSRFGVPRTFVCDNSIYKQKLQGV
FT                 HRILGGDAPIYSALFAAGESDGDDKSHGKDDGSTIRRRPSKLVGRAAA"
XX
SQ   Sequence 5106 BP; 1549 A; 1164 C; 1428 G; 965 T; 0 other;
     agtggcgccc gagcagggac caggggctga ggagagtgcg gcgagctagc ggcataaaga        60
     accgcaaact tgcccaaatc caggtaatcc aggtatcgag catacccgcg tgtacccgac       120
     ctgctcaacg aaataacgaa agaatagcgc tagcggcggc aaataacggc gtgagcgtaa       180
     cggcgctaaa gtgcattgca ccgaaggcgc gtcaaaagca tagctaaact tatgtgtttg       240
     tgtatacata tattcatata ttcatatata tatatataca tatttatacg aacatatata       300
     cagaagagaa aattaatgta aaagggaaaa caaattttac aaatgttaat gaagtgtgcg       360
     gcctcgtgag cggatatacc tcacggtacg ttgcaacagg gtaagctagc ggttctcaag       420
     tcataaaagt gcggcgcaca ttgggtcgga agcaagagaa aacttagaca aaataagttg       480
     cagtaaaact gcataaaacg aggaaatata aaggagaggt agaaagaaag aaaatatata       540
     tatatatata agtggtaata ataataatga taataataag aatagtgatg agaataataa       600
     tggaaataat aatgacagta atagtgaagt gaactgtaca ttcttattct tggtgcgcgc       660
     ggactcgtga gcggatatac cccacggctc aacacgacag aatagattag cggtcactgg       720
     gccataaaaa cggagcgcac agtgggccaa aggcgaaata aaatagaatg aagtaaaata       780
     aaaaataaaa aataaaataa aataaattaa aatacaataa aataaaatat aataaaataa       840
     aatgaaataa tatttataat aaaacaaaaa aaaaaaaaaa aaaaaaatgt gggaatttgg       900
     tttattttat tcttggtgcg cgcggactcg tgagcggata taccccacgg ttcaacacga       960
     cggaatagat tagcggtcac tgggccataa aagtggagcg cacagtgggc caaaggggag      1020
     ataaaataaa ataaaataaa acaaaacaaa acaaaataaa ataaaataaa gtaaagtaaa      1080
     atataataaa ataaaataaa aatttacagt ggggaatttt gttcattttt aattcttggt      1140
     gcgcgcgggc tcgtgagcgg atataccccc acagctcagc ataataaatt cgaggtcatg      1200
     gggccgtaaa gagaacagtg ggacaagggt gaaataatag cgaataaaat aaaattaaat      1260
     taaattaaat taaaataaaa ttaaattaaa ataaaataaa accaaattga attaaatcgc      1320
     aggagatacg atctcgaata aggttggccg acgggtcgtc gctggacgta acgcgaacaa      1380
     tgaaggtagt cgtggccctc gcggagaagg tagtgcagat gacggtgctc atcatgccga      1440
     ctatgttgga tcacattatt ttagggatgg atttcctgtg cgcggtgggg gcgacgctgc      1500
     gctgtggcga cacggaactg acgatgagaa tggaagaaac gtcaaaagag agcagtcgcg      1560
     ttgaaaacga ggggtcactc gctcgacgct cgagctacgc taatgtgaac cccgaggcgc      1620
     caagctggac tccaccgtcg aagaaacgga gagctcgggc ggatgcagaa tcgcagaggg      1680
     caccggacat ttgcgcaagg gccgacagga agggagacga gcagctcgaa cggaagctgg      1740
     gagagcaccc cacgatgcga gacgcaacag atccggaaga agaacgcgac gcaaggccgg      1800
     ccctcggagc cgtagtgtgg ccggaagatc tggatcctag cctaaaggag ttcctggaga      1860
     ccgagctagc actcttcgag aagctcgaag gagtgtccca catagataaa cccctcaaac      1920
     agagatacta cccgaagaac ccagcgatgc agaagataat caacgagcag gttgacgaac      1980
     tgttcagggt tggagctatc gagccgtcga ggagcccgca cagcgcgcac atagtcctgg      2040
     tgaagaagaa gaccggagaa tggcgcatgt gcgtggatta ctggcagctc aacgcccact      2100
     cgattccgga cgcttatcct gttcccagga ttaaccacat cctgaaaaga ctgcggcaag      2160
     cccggttcat atctacgctg gacctcaaaa gcgggtattg gcagatcccg atggcggcgg      2220
     acagcaggga gtacacggct ttcaccgtcc cggggagagg tttgttccag tggcgggtaa      2280
     tgcccttcgg actgcattcg gctggggcaa cgttccagag agcaccggat acggtgatcg      2340
     gacccgagat ggagccccac gcgttcgcat acctggacga tatagtggtg atcggagcct      2400
     caaaggaaga acatacggcc aatttgaggg aggttttccg gcgactgaga gcggctaacc      2460
     tcaaggttaa tagaaaaaaa tgcagctttt tccgagaaaa gttggcgtat ctaggccacg      2520
     tcattagtgg ggaagggatc tgcaccgacc ccgcgaaagt cgaagcgatt cgagacttcc      2580
     ccacaccaaa gaacctgaaa gagctacgac aatgcttggg aatggcgtct tggtacaggc      2640
     gatttgtgcc gaacttcgct tcattggtcc aacgaatgac caggctgctc aaaaaagggc      2700
     agaagtgggt ctggaccgag gagcaagaag atgcgctgca aaagctgaag gggagcctaa      2760
     cgacagcacc agtcctggcg tgccccgact tctcggaaaa atttgtgctg caaaccgacg      2820
     ccagcgactg cgagctgggc gcagtgctaa ctcaggagat cgagggtcag gaacgagtca      2880
     tagcctacgc cagccgaaga ctgactaaaa cggaggtgaa ttattcggcg atcgtctggg      2940
     caatcaggaa gatgcgttgc tatctagaag gctacaggtt cgacgtaatc acagaccacc      3000
     tggcgttgaa atggctgaac tcgatagaga gccccacggg caggatcgcc cgatgggcgt      3060
     tagaactaca acaattccag ttagacgtcc gttattgccg gggaagccta aacgtggtgg      3120
     ccgacgcact gtctcgccaa cccctggaga attgtcaaca agcggtggag gagtgcctcc      3180
     cttgtaagtg gatagcgaag atgcgcgaga gtattgctaa cgacccagag aagttcaggg      3240
     actacgtaga ggaaaatggc cagatatata gaaacttggg ctatcggacg gacgacgagg      3300
     attacatccc ttggaagctg tgcgtctccg agggccaaag aagcagggtc ctccatgaat      3360
     gccacgatgc ccccacagca ggacatcaag gggtgagaaa gacggcagct agactggcgc      3420
     agagatacta ttggccgggc atgttccgaa atgccgccaa gtacgtaaag cgctgcgaga      3480
     cgtgccagaa attcaagtgc gtacaacaaa agccggccgg gcagaagctg acaaggcagg      3540
     tagcggagcc aatggcggtc ttgtgcgccg atttcgtggg acctttacct cgatccaagc      3600
     gtgggaacac aatgttgttg gtgttccacg acgctttcgc taagtgggtg gagctagtgc      3660
     cgttgaagaa ggccactacc gcgctgctgc agctagcgtt ccgggaacgt atactcagca      3720
     gattcggagt acccaggaca ttcgtatgcg acaattcaat ttacaagcag aagcttcaag      3780
     gcgttcatag aatccttggg ggtgacgctc caatatacag cgccttattc gccgcaggag      3840
     aatccgacgg agacgacaaa tcgcacggta aagacgatgg tagcacaata cgtcgaaggc      3900
     catcaaagct cgtgggacga gctgctgcct gagataacgc tggccgtcaa ctcgagtgtg      3960
     gccgattcca caggcttcac tcctgcattc ctaatgctgg ggcgggagcc acgcctaccc      4020
     gccgcactgt atgaagaagt cactccgggt tctgcgacga gagaaatcca gcccaaggcc      4080
     aaagaagtta ggatgagaga aatcttcgac gtagtccgta acaacttaca gcgagcctcg      4140
     aaggatcagg gacgatatta taatatgcgt aggcgcgaat ggaggccgaa gccaggttcg      4200
     tcagtcctgt tgaggcagca cccgttgtcc aacgcggcgg atggcttcgc agcgaaattg      4260
     gcaccgaagt atgacggccc gttcaggatc gttagctttg tctcccccaa catcgtacgc      4320
     ctcaccaaac gcggcgagca caaaagaagg gtagctagca tctcccagct gaagcccttc      4380
     catcacgacg gcgacgagag cgagaaagag cgggacgaga gccgagggac catcgacgtc      4440
     tctgaacact gacggcaaca cacctcagtc ataccctttc cccacctcaa acctgttatc      4500
     caacccccgt agtatctcgt gaaagttgat atactaactg gtagtttagg aggcagtatc      4560
     ctaaaaagtg tgtcacttat acttgggttt tcagatacaa gaacaatgga gaacgtggtc      4620
     atcataatca gcagcgagga cgagagggag gaagaggcgg ctcgcgtgga agatgtcagc      4680
     gacgctgaca ccgagccatt cccgggtacg gggtaccaaa ggcgaggcga cccgagggtg      4740
     ggccgggagt attacaggtc tcgtgaggag cgacccccac ccaagttcaa acacacgaac      4800
     gaggccgaac tgctggccga tatggccgat atcttggacg gctgggagcc gaatttattc      4860
     gagatcctca tgggggagag cccccctcca ttcgacccag cgccggtcat cccacccggc      4920
     tggaagatcc ggccaccggg ggcctcagtg gacgaacaga ccatccgagc ggtacaatgc      4980
     gagctaggga tgcggtagct accgcgcaga agggtgcgtt tccgtgttcg taccgagggc      5040
     gccacggtca atgtgacggt tacaccctcg gggggcgtga ccctcgctct agtaaataag      5100
     gggggg                                                                 5106
//
ID   Gypsy4-I_Dpse repbase;    DNA;    INV; 6028 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dpse;
KW   Gypsy4-LTR_Dpse; Gypsy4-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6028
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1045-1045 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   19727   13700.
XX
CC   Positions [2915-3418] - Reverse transcriptase
CC   Positions [4490-4999] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           794..5368
FT                 /product="Gypsy4-I_Dpse_1p"
FT                 /translation="MPVKRSPEKLINLKDIERPTTSNQRAPSISHSLTTRS
FT                 KTKPVETATMPDPPPDQENLDASTPTTSNRAASDVLYTVMAGTISAEMAKQ
FT                 TLAMSAAMAQLTEKLSQAISTGLQAASTASSRERSPIRIEQLSSGTHVEQH
FT                 NIQPLLPNSHSQAASDQTRDYGQIFSQAPLPGEVRPDRISQIMANWKLRFN
FT                 GKDSMSIDDFIYRIEALTHQTMNGNFELVARNSNNLFEGKASEWYWRYHKS
FT                 VSQIRWHDLCVALRGQFKDSRTDRIIRTEIEDRKQLVNESFDDFYSVIASL
FT                 ADRLTQPMSEQSLLETLRANLLTEVQREILYEPASTIAQLRHLVRTREIFM
FT                 RTVYKPSVAIPKPKYRNISALGHQTDHISESDSSDIEEVEVAAIEASCWNC
FT                 GAKGHRYQECLAERRVFCFGCGLADTYKPNCRRCSSNSTKKLSSACTTEKC
FT                 TQTSCLEGDEYRLDETPKLLHNLLPAASYHPDLQQSINYSTPGKSSTRSRL
FT                 RRIAFNRQTRAERKMLLETVIGKLHDFRPYAQVTLLGNTVVGLLDTGASVC
FT                 CIGGHLAKDVMEKTEYKRLSATVKTADGKSQDIIGRLTTEVSYRGESKKIT
FT                 FFVVPSLSGDLYLGIDFWKAFNLLPVSLLSEQLSVLSVSDPLSRSLTVHQQ
FT                 KTLAAAILLFPSFAIKGLGRTTLISHSIDIADAKPIKQRHYPVSPAIEKLM
FT                 YNELDRMLKLGVIEESNSSWSSPVVLVRKPGKVRLCIDSRKLNDSTVKDAY
FT                 PMPLIDGILARLPKAEFITSLDLKDAFWQIPLDKKSRDKTAFTVPGRPLYQ
FT                 FTVMPFGLTNSPQTMSRLMDKVIPANLRNEVFIYLDDLLIVSDTFERHLEV
FT                 LGILATQFKIANLTLNVEKSHFCIKEVKYLGHVIGNGTINTDPDKIAAVTD
FT                 FPVPRSIKQVRRFLGLTGWYHKFIRNYAALAAPLTDTLKQKRSFVWSEEAQ
FT                 KSFELLKERMSTAPVLHSPNFNIPFSIHCDASDSGVGAVLMQTNEDKDEVP
FT                 VAFMSRKLNKCQRNYTVTEKECLAAVLAVKKFRAYIEGQEFIIITDHASLK
FT                 WLMTQSDLSSRLARWSLKLQGFPFKIQHRKGSQNVVPDALSRTNTEDLSAL
FT                 VLSSIVDLQSEEFRSPEYVALRDKLVENASKTPDLKIVDGYIYRRAEHAAG
FT                 DKVADDLCWKLWIPRGLVEETLKDAHENQLSAHCGINKTLEKLRRFYYWPN
FT                 LVSDVRTYINNCHVCKITKHPNHTLRPPLGNIGTSDRFFQKLFVDFLGPYP
FT                 RSRSGHIGIFIVVDHLSKFPFLKPVKKFTADVVARYLEEDLFHCFGVPETI
FT                 VSDNGVQFRSEVFNALLGKYHIVHRYTAVYAPQANASERVNRSVIAAMKSY
FT                 VRPDQKNWDEQLSNICCALRSSVHSAINTTPYRLAFGQHMIVDGASYRLLR
FT                 NLQMLEDRTVQFGKEDSFDLIRHKAKDTMHAQHARNERTYNLRSRQVSFVV
FT                 GQEIYRRNFQQSNFAKGFSAKLAPAFIKSRIRQKLGNCYYEVEDLQGKLIG
FT                 KFHAKDLKQ"
XX
SQ   Sequence 6028 BP; 1770 A; 1287 C; 1356 G; 1615 T; 0 other;
     gttctaactt atagatatat tataatctta tttggcgccc aacgtggggc ccgaagcagc        60
     catcctggct gaccccaacc gatagtcttc attcttatca attacatctg ataatatagt       120
     tcctaacact tgttcgattg gttctcggtt ccttgttctg ttaatggtta gagctctatg       180
     gagatagcta aagcttaaaa ttgctttact acctggactc cactaaaaca gttaactcat       240
     gtgctttatg gagagtttct ggaagcgtta taactttaaa tggttataac tccaaaattt       300
     aatagtataa agtcattaga atccttgggt ggattgttca tactgcatag taggcgttgc       360
     ttattggtta cacgtggagt caagacctac ggccatcccg tttaccttgc ttgaggacaa       420
     tcatacctat cagttgcctt tggaatcgtg ataccttctc aggaaagttc actcctatgt       480
     aacatatctc ccttccttct ttgcttcctt tgtgttttca cttatgtata cttcctaata       540
     ttgtttgctg gagcttagtg agttacagcg tagccgccac tggcggaaaa taatatttta       600
     tcgtgtactc ttttcgtttt ctattctaat ctgtactata ttgacaagct cacattagaa       660
     cagctgatta agaccgtcac aaccatatga aacgatagca tggcaaccaa acagtttata       720
     caaattcctt cttttataca attttttttc ttagcgttat acaaaattaa tttaattaag       780
     cgagtcaaga gcaatgccgg ttaaacgaag ccctgaaaaa ttgattaacc taaaagacat       840
     tgaacgtccc acaacttcga accaaagagc accgtctatt tctcactcac tgactactag       900
     atcgaaaacc aaaccagtcg aaactgcaac catgcctgac cctccaccag atcaggagaa       960
     tttagatgct tccacgccga ctacgagcaa tagagcggca agtgatgttt tgtacacggt      1020
     gatggcaggc acaatttcag cagaaatggc aaagcaaact ctagccatga gtgcagcaat      1080
     ggcacaacta acagaaaaac tttcccaagc tattagtaca ggtttacaag cagcttcgac      1140
     agcttcctct agagagaggt ccccaatccg tatagaacag ttgtcatcag ggacacacgt      1200
     tgagcagcat aatatacagc ctttattgcc caattcacac tcgcaggcag cttcggatca      1260
     gacacgggat tatggtcaaa tctttagtca ggcgccactg ccgggtgagg tacgtccgga      1320
     tcgtataagt caaataatgg caaattggaa gctgagattc aatggcaagg attctatgtc      1380
     tatagatgac ttcatttata gaatcgaagc cttaacccac caaacgatga atgggaactt      1440
     cgaactagta gcccgaaact cgaacaattt atttgagggt aaggctagtg agtggtattg      1500
     gagataccac aaaagtgtgt cccaaattcg ctggcatgac ttatgtgtag cgttaagggg      1560
     tcaattcaaa gattcacgca cggatcgcat aatccggacg gaaatcgaag atcgtaaaca      1620
     gctcgtaaat gagtcgttcg atgattttta cagtgtgatc gcctctttgg cagatcggct      1680
     cacacagccc atgtcggagc aatctttgtt agagactcta agagctaatc ttcttactga      1740
     ggttcagcga gaaatattat atgagccagc ttccaccatt gctcagttaa gacatctggt      1800
     gcgaacacgc gaaattttta tgcggacagt ctacaaacct tcagtggcga taccgaaacc      1860
     caaatatcgc aacattagtg cgttgggaca tcaaacagac cacatttccg aatccgatag      1920
     ttctgatatt gaagaggtag aggtagctgc cattgaagct tcctgttgga attgcggggc      1980
     gaagggccac cgttatcagg agtgtctggc agaacggcga gtcttctgct ttggttgtgg      2040
     attggctgac acgtataagc ccaactgccg ccgttgcagc tcgaattcca caaaaaaact      2100
     tagcagcgcg tgcacaaccg aaaagtgcac gcaaacaagt tgtctcgagg gggacgaata      2160
     cagattagat gagactccaa aattgctaca taacttatta ccggccgcgt catatcaccc      2220
     tgacttacag caatccatta attattccac tcccggcaaa agtagcactc gttcgcgatt      2280
     gcgtaggatc gccttcaacc gtcaaactag ggccgaacgc aagatgctat tagagacagt      2340
     aattgggaaa ctccatgact tccgcccata tgcccaagtc actctactgg gtaacacggt      2400
     agtcggcctt ttggacaccg gtgcgtccgt gtgctgtatt ggcggtcatc tggcgaaaga      2460
     cgtaatggag aaaacggaat ataagcgttt atcggccacg gtgaagacgg ccgatggaaa      2520
     atcgcaggat attattggtc gactgacgac agaggttagc tatcgaggcg aatccaagaa      2580
     gataaccttt ttcgtagtcc catctttatc gggagacctt tatttgggta tagatttttg      2640
     gaaggcgttt aacttgcttc cagtttctct tttaagtgag caactatcgg ttttgtcagt      2700
     gagcgatccc ttaagtaggt cattaactgt acatcaacaa aaaacactag cagctgccat      2760
     tcttctgttt ccctcctttg ctatcaaagg cttaggacgc accaccttga tatcgcattc      2820
     gattgatata gctgacgcaa aaccaatcaa gcagcgtcac tatccagttt cacctgctat      2880
     agagaagctg atgtacaatg aattggatcg aatgcttaag ctgggggtaa tcgaagaatc      2940
     aaatagtagt tggtcctcac cagtagtatt agtgcgcaaa cctggcaaag ttcgactatg      3000
     catcgatagc aggaaactca acgactctac agtaaaggac gcatacccta tgccgcttat      3060
     cgatggtatt ttggcgagat tgcccaaggc cgagttcatt acaagcttgg atctaaaaga      3120
     cgcattttgg cagataccgc tcgataagaa atcgcgggat aaaacggcgt ttactgttcc      3180
     cgggaggcct ctttatcagt tcaccgtgat gccatttggg ctaactaact cacctcagac      3240
     catgtcaagg ctcatggata aggttatccc cgcaaatctc cgaaatgaag ttttcatcta      3300
     ccttgatgac ctcttgatcg tgtctgacac atttgagcgg catctggagg tattaggaat      3360
     tctagctact caatttaaaa tagcaaattt aaccctaaat gttgaaaaga gtcatttttg      3420
     tataaaggag gtcaaatatt taggtcacgt aattggtaat ggcacgatta ataccgatcc      3480
     agacaaaata gcagctgtta ccgattttcc agtacctcgt tcaattaagc aagttcgacg      3540
     tttccttggc ttaactggat ggtatcataa gttcatccgg aactatgctg cattggccgc      3600
     ccctttaaca gatactctaa agcaaaagcg tagctttgtt tggagcgaag aagcacaaaa      3660
     gtcgttcgaa ttattaaagg aacgtatgag cacagcccca gttttgcata gcccgaattt      3720
     caatatacca tttagcatac attgtgatgc aagtgactca ggcgtggggg ccgtgttgat      3780
     gcagaccaat gaggacaagg atgaagtacc tgtggctttc atgtcacgga agctaaataa      3840
     atgccaacgg aattacacag tgaccgaaaa agagtgtttg gcagcagttt tggcggttaa      3900
     gaagtttagg gcttacatcg aagggcagga gttcatcatc ataacagacc atgcatcttt      3960
     aaaatggcta atgacccagt ctgatctcag ttcacggtta gctagatggt ccttaaaact      4020
     tcaggggttc ccgtttaaaa tccagcatag aaaaggtagc caaaacgtag tcccagatgc      4080
     tctttcgcgc acaaataccg aagacttatc ggcattagtt ttgtccagca ttgttgacct      4140
     tcagtcagaa gaatttaggt cgccggagta tgtagcccta agagacaaac tcgttgaaaa      4200
     cgcgtccaag actccagatt tgaaaatcgt agatgggtat atataccgac gcgccgagca      4260
     cgcggcggga gacaaggtag ctgacgattt atgttggaag ctttggatac cacgaggatt      4320
     agtcgaggaa accttaaaag acgctcacga aaaccagcta tcagctcact gtgggataaa      4380
     caaaacatta gaaaaactta ggcgtttcta ctattggccg aatttggtgt ccgacgtaag      4440
     gacatatata aataattgcc atgtatgcaa gatcacaaag catcccaatc atacccttcg      4500
     accgccttta gggaacattg gtacatcgga taggtttttc cagaaactgt ttgtcgattt      4560
     cctggggccg tatccccgaa gtcgttctgg gcatataggg atttttattg tggttgatca      4620
     cttgtcgaag tttcctttct taaagccagt aaaaaagttt actgcggatg tcgtggcacg      4680
     gtatctggaa gaagatttgt tccattgttt tggggttcct gaaacaattg tttcggataa      4740
     tggtgtacag ttcaggtcgg aggtgtttaa tgcgctgcta gggaaatatc atattgtgca      4800
     caggtatact gctgtttacg ctccgcaggc aaacgcatca gaacgagtaa accgatcggt      4860
     gatagctgca atgaaatcat atgtccgccc tgatcaaaag aattgggatg agcagctcag      4920
     taacatttgc tgtgcgctgc gttcctcggt ccattcagcc ataaatacga ctccttatcg      4980
     cctcgctttt ggccagcaca tgattgtcga tggagccagc tacaggctgt taagaaattt      5040
     acagatgctg gaagatcgca ctgtacagtt tggtaaagag gattcgtttg acctcatcag      5100
     acataaggca aaggatacga tgcacgcaca acacgctagg aatgaaagaa catacaattt      5160
     gcgcagtcgg caggtgtcat ttgttgtagg ccaggagata tatcggcgaa atttccagca      5220
     aagcaatttc gcgaagggct ttagcgctaa actagcacca gcgtttataa aaagtcggat      5280
     acgacagaag ctaggaaatt gctactatga ggtggaagat ctgcagggta aattaatagg      5340
     gaagtttcac gccaaggatt taaaacaata acttctcttt taatagccgt tcaagcgtgg      5400
     atcccacttt tggtgtggtt cccccaaagt gtgattttgg taggggggaa tttgtagtga      5460
     cgcttgaacc agctacaaaa atattactac aacaacaaca aaaaataaaa aaacgggaaa      5520
     aaaaaaaact aatcaaaaat tttaaatcca gggaatatcg taattgcgtt tagcgcccct      5580
     attgctcgtg atcgacgggt actttttggg cagacggtcg gactcgggag agagtcggcc      5640
     gcggttatgt taactcgagg gaaatggtgg ttggcacttt cgctgttagg agggttcgtg      5700
     aatgcaagtc cagctacggt cgctcttttc gattttgggc cccacttcag aaggtagtgt      5760
     ttgtggtgga aagaggaaat attagcggaa aaacataact aaacctcgcg ccagtgctaa      5820
     atcaaagaaa aaaagacaaa caaaagaatc gtgttgcttt caaattatac cataaagaaa      5880
     tcgaaaagaa atttgccacc ccagtaaggg ggcgttccat tctgacccca cgccggaggc      5940
     aaggcatccg aaagtggtct cttttttttg tttcggacgg ccatttgcaa gttaatataa      6000
     caagagtgcc aatcgccaca tagcgaat                                         6028
//
ID   Gypsy4-I_Dya repbase;    DNA;    INV; 7680 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dya;
KW   Gypsy4-LTR_Dya; Gypsy4-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7680
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1046-1046 (2009).
XX
DR   Genome; chrU; Positions 13099601 13091922.
XX
CC   Positions [2021-2443] - Reverse transcriptase
CC   Positions [4455-4931] - Integrase core
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..1351
FT                 /product="Gypsy4-I_Dya_1p"
FT                 /translation="MGRSWIYRLKKEDFAYVAQRLRISLSGRTEDMRKALA
FT                 EYYAETENDPKLAAIWTELEATYPDRPGPSIKLTNPEGEDLIASLNMEEMF
FT                 REGQRRETSRERRPSPERPRPSPPDYAKVAKQVREWSFRFDGEEKPLEFLE
FT                 QVEWSANTYGLDLNMIPRAMPELMQGKALKWYIANNKHWRTWAEIIDSFQT
FT                 YFLPRGYFTKLADKARQRKQGFREAFKDYMVEMQTLIRPLGYGKKETLELI
FT                 KENCTPDLRIALRSYHVDDLEALMILADEYEELHREREAFAEEHKYSRNKA
FT                 PAATHVTCRRCEDSGDPGTHTREQWAQYTPVQARRQNTTLWRPPVTTQRHT
FT                 GTTSGGNPGQNTTHIANPQEACRRCGGHGHWARGCREQRLLFCWMCGKVGV
FT                 RSTECCQRAGNDQRSQPQRDGPGSQDAASPN"
FT   CDS           3057..5375
FT                 /product="Gypsy4-I_Dya_4p"
FT                 /translation="MGIGKYHWEESSRGFTAFTVPGKGLFQWKVMPFGLHS
FT                 ASATFQRALDQVIGPEMSPHAFAYQDDIIVIGRTLEEHKRNIREVFIRLKK
FT                 ANLKINPEKCQFFKQELLYLGHRVTSQGIGTDPEKVAAIAQLEPPSSVREL
FT                 RQYLGVASWYRRFVPDFARIVRPLNDLLRKGTKWTWSQDHQQAFEEVKARL
FT                 VTDPVSACPDFGRTFILQTDASDYGIGAILTQDTEDGERVISYSSRTLNGA
FT                 EKNYSTTEKECLAIVWAIRKLRPYLEGYHFKVVTDHMALKWLNSIESPSGR
FT                 IARWALELQQYDFEVAYRKGRLNVVADALSRQPLPESVSAEPDMLRRTQDK
FT                 EAESECSWIKEMREKLKAQPEKFSDYVWEGSTLYRQIPHRAGNEDVVSWKL
FT                 CVPRQLRETVLRENHDAPAAGHVGSRKTIARLAARYYWPGMQRDARAYVRK
FT                 CEDCARFKPNQRQAAGKMLTQIPEEPWATVCADFVGPLPRSKHGNSMLLVL
FT                 IDRFSKWTELVPLRTATAETLQKAFRERIVSRFGVPKVVITDNGVQFTSRA
FT                 FKKFLNDMGIKQQFTAPYTPQENPTERVNRTVKTMIAQFAGQNQRNWDERW
FT                 PEIMLAVNSSVSDSTGYSPAFLTQGREPRLPNALYDRETLGTGRQPESPEG
FT                 NAEKMREVFEIVRRNLERVSQDQARHYNLRRRQCKPSVGEVVWAKEHHLSK
FT                 AAEGFAAKLAPRFDGPYQIVDFISPVICKIRHRMNKKERTVHVSDLKQQDQ
FT                 KEKGGKNVESDPSEGMQENDNT"
FT   CDS           1580..3046
FT                 /product="Gypsy4-I_Dya_2p"
FT                 /translation="MSLLILSGIVDALVLGWNFLTQVGAEIKCAGHEIRIP
FT                 ARGRHNGWLEEKLSVALVQKDGEEDHVNKFLETELAEFQAMTGTSSIAEHM
FT                 ITMKDDKPIKQRYYPKNPKIQGEINAKVDELLKMGMIEHSRSPYSSPIVTV
FT                 KMKTGKWRLCVDFRQINANSIRDAYPIPRINYILDQIREARFISSLDLKDG
FT                 YWQIPLEESSRGFTAFTVPGKGLFQWKVMPFGLHSASATFQRVLDQVIGPE
FT                 MSPHAFAYQDDIIVIGRTLEEHKRNLREVFSRLKKANLKINPEKCQFFKQE
FT                 LLYLGHRVTSQGIGTDPEKVAAIAQLEPPSSVRELRQYLGVASWYRRFVPD
FT                 FARIVRPLNDLLRKDTKWTWSQDHQQAFEEVKARLVTDPVLACPDFGRTFI
FT                 LQTDASDYGIGAILTQDTEDGERVISYSSRTLNGAEKNYSTTEKECLAIVW
FT                 AIRKLRPYLEGYHFKVVTDHMALKWLNSIESPSGRIARWALELQ"
XX
SQ   Sequence 7680 BP; 2366 A; 1692 C; 2123 G; 1479 T; 20 other;
     gacaaataaa atcagttcgt tacatctggc gcccagataa cgtgattatc ccggcagtaa        60
     acacaaataa agcagtatgg gtagaagttg gatctaccgt ctcaaaaagg aagatttcgc       120
     gtatgtcgca cagaggttgc gaatatcgct gtccggaagg acagaggaca tgcggaaagc       180
     cctagcggag tactacgcag agacagagaa cgacccaaag ctcgcagcaa tctggacaga       240
     attggaggca acatatccgg acagaccagg tccaagcata aagcttacga accccgaggg       300
     tgaagactta atcgcaagtc tgaacatgga ggagatgttt cgagaagggc aacggagaga       360
     gacaagcagg gaaaggaggc caagtccaga aagacccagg cccagcccgc cagactacgc       420
     gaaagtagcg aagcaagtaa gagagtggtc ttttcgcttc gacggagaag aaaaacccct       480
     cgaattcctg gagcaggtgg aatggtccgc aaacacatac ggtttggacc tgaacatgat       540
     tccccgagcc atgccggaat taatgcaggg aaaggctctg aagtggtaca tagccaacaa       600
     caagcactgg aggacttggg ccgagatcat agacagtttc cagacgtatt tcctgcccag       660
     gggatatttc acgaagcttg cggacaaggc aagacaaagg aagcaagggt tcagggaggc       720
     attcaaggac tacatggtcg agatgcagac cctgataaga ccccttgggt atgggaagaa       780
     agaaacgctg gagctcatca aggagaactg cacgccagac ctccgaatag cgttgagatc       840
     ctaccacgtg gacgacctag aggctctcat gatcctggca gatgaatacg aggaactgca       900
     cagggaacgg gaggcatttg cggaagagca caaatacagc cgcaacaaag ccccggccgc       960
     aacacacgtc acgtgcagaa ggtgtgagga ctcaggagat ccaggcacgc atacccggga      1020
     acagtgggca caatataccc cggtccaggc aaggcgacaa aacacgaccc tatggaggcc      1080
     gccagtcacc acacagagac acactggaac aacgtcaggg ggcaacccgg gtcagaacac      1140
     aacccatatt gccaatccac aggaagcgtg tcggaggtgc ggcggacacg gccattgggc      1200
     aagaggctgc cgagaacaga ggctgctgtt ctgctggatg tgcgggaaag taggagtccg      1260
     aagcacagaa tgctgccaga gagcgggaaa tgaccagcga tcccagccgc agagagacgg      1320
     gccggggtcg caagatgccg cctctccaaa ctaaccggaa aactaatcga ggaggagcag      1380
     cagttgtccg cagcggtaac aatcgggaca cgtacaaggc cacgatcgac accggggcaa      1440
     cagcaagctt cataagtgaa gaggtgccca aggagcgatt acaaggatac gacggcaggt      1500
     taggttggca gatggaaggt gtggcgaaat caacgcaaag ctcgaaatag gagtggagtt      1560
     cggcaacagg cgactcgtca tgagcctgct aatattatca gggatagtgg atgcgttggt      1620
     gctggggtgg aatttcctca cgcaagtcgg ggccgagatc aagtgcgccg gtcatgaaat      1680
     ccgaataccg gccagaggca gacacaacgg gtggctcgag gagaagttgt cggtcgcatt      1740
     agtccaaaag gacggcgaag aggaccacgt gaacaaattc ctggaaacag agctcgcgga      1800
     gtttcaagcc atgaccggaa cgtcgagtat agccgagcac atgataacca tgaaggacga      1860
     taagccaatc aagcagagat actaccccaa gaatccaaag attcaagggg agatcaacgc      1920
     gaaggtggac gaactgctga agatggggat gatagagcat tcaaggagcc cgtacagctc      1980
     acccatagtc acggtgaaga tgaaaacggg aaaatggaga ttatgcgtgg acttcaggca      2040
     gataaacgcg aactccataa gggatgccta cccgatacca cggataaact acatcctcga      2100
     tcaaataagg gaggcgcgat ttataagcag cctggaccta aaggatgggt attggcaaat      2160
     accactggaa gagtcaagcc ggggcttcac ggccttcacg gtcccaggaa aagggctgtt      2220
     ccaatggaag gtgatgccat ttgggttaca ctccgcgtcg gccacatttc aacgggtcct      2280
     ggatcaggtg attggaccgg aaatgtcgcc gcatgcattt gcgtatcagg acgacatcat      2340
     cgtgattggc cgcaccctag aggaacacaa gagaaacctc agggaggtat ttagtcgcct      2400
     gaagaaagcg aacctgaaaa taaacccgga aaaatgccag ttcttcaaac aagaacttct      2460
     gtacctagga caccgcgtca ccagccaagg gataggcacg gacccagaga aggtagcagc      2520
     gatagcccag ctagaaccac cgtcatcggt ccgagaactg aggcaatacc ttggagtcgc      2580
     atcgtggtac cgacgtttcg tgcctgactt cgcgcgcatc gtaaggccac tcaacgacct      2640
     cctccgcaag gataccaagt ggacatggtc acaggaccac cagcaagcct tcgaggaggt      2700
     aaaagccaga ttggttaccg acccagtctt ggcgtgcccc gacttcggga gaacgttcat      2760
     cctgcaaacg gacgccagtg actacgggat tggggcaatt ctcacgcagg atacagaaga      2820
     tggcgaaagg gtcatttcat actctagccg gaccctaaac ggagccgaga aaaactactc      2880
     gacaacggag aaggaatgct tggcaattgt gtgggctatt cggaagctaa ggccgtacct      2940
     tgagggatac cactttaagg tggtgacgga tcatatggcg ctgaagtggc tgaacagcat      3000
     agaaagccct tcgggaagaa ttgccagatg ggcgttggag ctgcagnnnn nnnnnnatgg      3060
     gtattggcaa ataccactgg gaagagtcaa gccggggctt cacggccttc acggtcccag      3120
     ggaaagggct gttccaatgg aaggtgatgc catttgggtt acactccgcg tcggccacat      3180
     ttcaacgggc cctggatcag gtgattggac cggaaatgtc gccgcatgca tttgcgtatc      3240
     aggacgacat catcgtgatt ggccgcaccc tagaggaaca caagagaaac atcagggagg      3300
     tattcattcg cctgaagaaa gcgaacctga aaataaaccc ggaaaaatgc caattcttca      3360
     aacaagaact tctgtaccta ggacaccgcg ttacaagcca agggataggc acggacccag      3420
     agaaggtagc agcgatagcc cagctagaac caccgtcatc ggtccgagaa ctgaggcaat      3480
     accttggagt cgcatcgtgg taccgacgtt tcgtgcctga cttcgcgcgc attgtaaggc      3540
     cactcaacga cctcctccgc aagggtacca agtggacatg gtcacaggac caccagcaag      3600
     ccttcgagga ggtaaaagcc agattggtta ccgacccagt ctcggcgtgc cccgacttcg      3660
     ggagaacgtt catcctgcaa acggacgcca gtgactacgg gattggggca atcctcacgc      3720
     aggacacaga agatggcgaa agggtcattt catactccag ccggacccta aacggagccg      3780
     agaagaacta ctcgacaacg gaaaaggagt gcttggcaat tgtgtgggct attcggaagc      3840
     tgaggccgta cctggaggga taccacttta aggtggtgac agatcatatg gcgctgaagt      3900
     ggctgaacag catagaaagc ccttcgggaa gaattgccag atgggcgttg gagctgcagc      3960
     agtatgactt cgaggtagcg tacaggaaag gccggttgaa cgtggtagca gacgcattgt      4020
     cgaggcagcc actgccagag tcggtctcag cagaacccga tatgctgaga agaacgcagg      4080
     acaaggaggc cgaatcggag tgcagctgga tcaaggaaat gcgagaaaaa ctaaaagcac      4140
     agcctgaaaa gttctcagac tacgtgtggg agggtagcac cctttacagg cagattccgc      4200
     atagagcagg gaacgaagat gtagtgagct ggaagctatg tgttccgcgg cagctgagag      4260
     aaacggtctt gcgtgaaaac cacgacgccc cagcagccgg tcatgtaggc agtcggaaga      4320
     cgattgcacg gcttgcagcc cggtactact ggccaggaat gcagagagac gcaagggcct      4380
     acgttcggaa gtgcgaggac tgcgccaggt tcaaaccgaa tcagcgacag gcggcgggaa      4440
     agatgctgac acagattccg gaggagccct gggcgacagt gtgcgccgat ttcgtcggac      4500
     cactaccgag gtcgaaacac ggaaacagta tgttgttggt actgatcgac aggttttcga      4560
     agtggacgga gttggtgcct ttgcgaacag ccacggcgga aacgttgcag aaagcgttca      4620
     gggaacgcat agtctcacga tttggagtac cgaaggtggt gatcacggac aacggcgtgc      4680
     agttcacgag ccgggctttt aagaagttcc tcaacgacat ggggataaag cagcagttta      4740
     cggcaccgta taccccacag gagaatccga cagagagagt aaaccgcacg gtgaagacaa      4800
     tgatagcgca gtttgccgga cagaaccaga ggaattggga tgaaaggtgg cccgaaatca      4860
     tgctggccgt gaattccagt gtttcggatt ccacaggata ctcaccggca tttttgacac      4920
     agggccgcga gccaagacta ccgaacgcac tctatgacag agaaacgcta ggtacgggaa      4980
     ggcaaccaga gtcaccggaa ggaaacgctg agaagatgag agaggtcttc gaaattgtgc      5040
     gcaggaacct agagagggtg tctcaggacc aagcaaggca ttacaatctg cggagaaggc      5100
     agtgtaagcc aagcgttggt gaagtggtgt gggccaagga gcaccatttg tctaaagcgg      5160
     ctgaagggtt tgcggccaaa ctagctccga ggttcgatgg accgtaccaa attgtggatt      5220
     tcatatcgcc ggtgatatgt aagattcgcc accggatgaa caaaaaggaa cgcacggtac      5280
     atgtcagcga cctaaaacag caggatcaga aggagaaggg tggcaagaac gtggagtcgg      5340
     atccatcgga aggcatgcag gagaacgaca acacctgaga acggactggg ttcggcagcc      5400
     gttctagcgt caggccgagg cgagagtcaa cggatgcaga ctgcgagtct gactgaatct      5460
     aaaatcacga tctgactaag tcagaggcag tttgccagta ataacgatat tgcatttaat      5520
     ttcaggtaca ccgataacaa taggtgaaaa tgtaatcaag acatttctct gcgagactat      5580
     tgacaagtct cttttacgta tcgagtggga gaagtggcta agagccttcg aaatttatct      5640
     catagctgaa gaaattgaca cacctattcg gaaaagaagt aaactacttc atgtaggaga      5700
     accacaactt cagacggtag cgttcacatt acgcgatgcg gtgttagaaa atgccacaga      5760
     taataatata gatatataca aggtccttgt tgaaaaattg aatgcataca tctcgccaaa      5820
     gcagaactcc agttttgaaa ggcatctgtt taggaatctc tgtccatcag aaggagagac      5880
     ttttgctaaa tttgtattaa ggctacgtca ccaaattcag aagtgtaatt tcgggctact      5940
     aaagcagaag tcgaggagat ttgtctaaag gacaaaataa ttgacagctg ggccggagta      6000
     gatcttaaaa agaaattgtt gggtaaaaga atacaatttg tctcaaatgt tagatgcctg      6060
     tcaagtcgat gaggaaatta ataaacaatc ggaaatgatg cgatcaaacc cagaattggg      6120
     gacaagtaaa aacctagaag ccgagagtat aagaaaaatc tcaacaggga tcatgaacat      6180
     taataaatcc atcgaatgca gtagttacag ttctttgagc ccagccaaaa atcaaaagtg      6240
     caacaagtgc acacgaattg gtcatttcgc cattaaatgc acaacaaact taaaacgcga      6300
     gagaccccaa gggcataatg aaatctttaa acgccaacgc accaaagtac gtcgggtaga      6360
     gggagaacgc gatgtgaaat ctgaagaaag ttgttttaaa attcagagtg atgaggagga      6420
     tgaatttatt aaatgtcgaa ttggtgggcg cgaagttttc ctagtaattg actcgggctc      6480
     caaattcaat ctgctaagcc cgaaagactg gtcatatctc cagacaggaa agacagtttt      6540
     attcaacgtt cgaccaaatt caaataataa atttagagga tatgcttcac acgaattgct      6600
     tcatgtaatt tgtgtgtttg aagcccctac atccattggc ttgaaccctg aggtgatggc      6660
     ttcgttttta aacggaacac aatcactgct ggggaaagac acggcactgg aacttaatgt      6720
     tttacgcctc ggactggaag ttaagaaaat cgattcagta actccgtttc caaaatggat      6780
     ggggccgccg gtaaaattat caattgatac aaatatcgat tttcagcaac caattagaag      6840
     gataccaatt gcacttgagg ataaagtaat tgctaaactg gaagaggatg ttgcccttga      6900
     tataatcgaa ccagtaatag ggcattctcc ctggatataa cccatggtca tagcgtttaa      6960
     agaaaatggc gacttaagga tatgcataga cttgaagctt gccaataagg caatcttaag      7020
     gaaaaattat ccgctgcctg tatttgaatc gtttatgacg aaactaaggg gcgcacaata      7080
     cttcacccgc ttagacctaa aaagcgcata tcatcaattg gcgctagacg aatccagccg      7140
     atacataaca actttcatta cacccctggg tttgttcagg tacaaaagat taatgtttgg      7200
     agttaattct ggcgctgaaa tttttcaaag aagactggag gagctgttag cacaatgcaa      7260
     aaacgttatg aattatattg acgacatcat tatttttgaa acaaattaaa aagatcacga      7320
     ttacgccgtt cagaagatca gagatattct aaaagtaaat aacgtatttt tgaatgagga      7380
     aaaatgtatt tggaaaacac aacaagttaa atttctgaga cacatactat cgaaaaaagg      7440
     catcgaagta gactctgggc tggagaaaga gagttgggag actctagggg aagagagttt      7500
     ggagactcgg gaaatggaga gagagaggat ggagactccg gacttgctga aaagagagtt      7560
     tggagagtca gcaggcttaa aggcaattaa cgggacaaat cgaactttgg accggccaac      7620
     ggtaaaatct tggactttgg atccggagan nnnnnnnnng cgcggtgcgt cggaaggaac      7680
//
ID   GYPSY4-LTR_AG repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   21-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY4-LTR_AG is an LTR of the GYPSY4_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY4-I_AG; GYPSY4-LTR_AG; GYPSY4_AG; Gyspy clade; GYPSY34-I_AG;
KW   GYPSY34-LTR_AG.
XX
NM   GYPSY4-LTR_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-270
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 78-78 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY4-LTR is a long terminal repeat of GYPSY4_AG (its internal
CC   portion is deposited as GYPSY4-I_AG).
XX
SQ   Sequence 270 BP; 74 A; 73 C; 53 G; 70 T; 0 other;
     tgtaacgtcc ggactaatat cgcccactgt cactcaaccc gaaccccgaa cgcagcggta        60
     taaacgcatt ataccttgac cgctggagca cccggtgtgc tagatgaact gtcatagaat       120
     aaagctctct tcttggcgcg acattgaact gaacagacgt aagccactga cttctgcgta       180
     taattatttg tgtgctcttc cgaattgtgc taaatcttat taaaacggcc aattaacctt       240
     ccgccaaccg taaaacgctt ggtcgttaca                                        270
//
ID   Gypsy4-LTR_AP repbase;    DNA;    INV; 220 BP.
XX
AC   Contig7751;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4AP;
KW   Gypsy4-I_AP; Gypsy4-LTR_AP.
XX
NM   Gypsy4-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-220
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 444-444 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 220 BP; 53 A; 27 C; 48 G; 92 T; 0 other;
     tgttatctat agttagtaga tggcagcact gggagcgagg ctactctctt cgctactaac        60
     agtttagtag tcagtctgtc tcgaaagcct tgcgagtgcg ttcggtgtgt tttcaaatgt       120
     gtttgttttt ttaattttgt atgttttatt gaaatgaaat ataaggaagt gttttatata       180
     tgtattgagt tttgagtatc catttatttt gtctataaca                             220
//
ID   Gypsy4-LTR_Dmoj repbase;    DNA;    INV; 672 BP.
XX
AC   scaffold_6541;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dmoj;
KW   Gypsy4-LTR_Dmoj; Gypsy4-I_Dmoj.
XX
NM   Gypsy4-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-672
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1047-1047 (2009).
XX
DR   Genome; scaffold_6541; Positions 1442532 1443203.
XX
SQ   Sequence 672 BP; 175 A; 162 C; 171 G; 164 T; 0 other;
     tgtaaggcgg ctcactgaac cgcctcacat aattttttgt tatttttaaa taggccaagg        60
     gacgcgcgca agtcgcggcg atcgggaatg caactctgtc cttcgcggcg aaagttcgaa       120
     gggccgacgc cgtggtgagt tgtattgccg acgccgaggc ggatcgcggc ggaggcttgg       180
     aggcggccga cagagagcga aatgattatt agttttcgga cagcgaagaa tagcgggtga       240
     gcgcaagtga cttattagag tttaagtaac atgtaacgaa ttaaaagccg aaagtagaaa       300
     tagaagggga tgtagaaata agagtggaat gttttaaata aattaaaaga gaaattgaag       360
     tgaaattcgg cgtgttgttt attttgcaag tttaacacta acaacagtag tgattcccta       420
     ttcctccccc gctcccctct gttccattcg tttcaacctg tcgcggcaac gcccgactgt       480
     aaaaaggagt tggctataaa gaacgcggcc gcgcccgttc accgagtgga caagccccgg       540
     ctgtcgtcaa cttgtgtttc ccgtattttc ccccctcccc tctcctcact ctagtcccgg       600
     caaaacacaa atttcttgtg atcaaccacc ctgggcagac ttacgctgcc ccggccatag       660
     tggtacttta ca                                                           672
//
ID   Gypsy4-LTR_Dpse repbase;    DNA;    INV; 1616 BP.
XX
AC   Unknown_singleton_87;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dpse;
KW   Gypsy4-I_Dpse; Gypsy4-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1616
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1048-1048 (2009).
XX
DR   Genome; Unknown_singleton_87; Positions   13699   12084.
XX
SQ   Sequence 1616 BP; 478 A; 331 C; 366 G; 441 T; 0 other;
     tggcactttg tgccaagcag atttccaagg gagaatagcg gaaaaagata attgggatcg        60
     atgaccgagc cggccgcagc cacaaccagc tggccataga aagggaagag aagagactgc       120
     gctcccgaaa aaaaacacaa gaaccgatcg aattcgccgc tggcgcagag aagcgcaagg       180
     cagagagtcc gccgctccag ctgtgggtcc gactcagtgc atcagcagca tcgtcggcgc       240
     cgggaagctg cgaaactaaa agcggaatat tgaacatttt ttttgcccca agtttttttt       300
     gcgtaaatat cttgccctcg gccgacctgg cttagtgaaa aaaaaagtag aggaaataaa       360
     aacccagatc aaaattatac ccaggagcca ataggcaagg tcttagtgag tacgaataca       420
     aataccttgc tcccctttcg gcagtgcagc gccgttaatt cagtcttgct tttcttttcc       480
     cttaaaccgt aagggctagt cctatgtgga gcccaaagaa aagaaaggca taagggaata       540
     gaaatacaat atccatgctc aaaagcaaag aaaaaaagca gtcccccgaa agcctctgcg       600
     cgccttgttc tttctcttct tttctctttt tgttgctgtg ctctcccaat aaaattacat       660
     ttacagcaat tatagcaagc ggatcgtctt cgacaaaagc gcttttggag atggatggca       720
     cgtaagtgaa agaatattgc tttactctaa ataaattgca tgcatgagcg tgagagaagg       780
     agaggtatag gaaagaagga aggggagagg taaaacactt gggcagatcc acatgccgga       840
     agagatagca agaacagtaa ccatgggttt tttgttgttg tcacaaatgc tctgttaaat       900
     ttgtatgcca gtttagcggc tacctcctat atacatatac tgttttttta ttatatacac       960
     atttaattct tttttttcta tttagttata attcttctat tttaattatt attagtatta      1020
     ttttaatttc caacctggaa tattctcgaa tcctgttgtt cgctaaaata gttattgagt      1080
     caattgggag tttaagtaga gtagggaaat gcccctgtgt caagtaataa ataagtttta      1140
     aaatgaaatc gataatgaac taaattattt tagggcgcca tgccgagtgg attatggaaa      1200
     tgaagtgagt ctgggggatt tagggatcat cggccactaa tatggctttg cggcccagat      1260
     ggtcaaggta gggtgggcaa aacgctgcta cacctacagc tactcagcag cacaatccgt      1320
     acttcagcat gttctgtttt ctttgcagag caacctctat gtgtgcatag cttgtcactc      1380
     ttggtagttt cttttctgta tgtccagtcc gatcgatcat gtgttaggga ggaaaacagc      1440
     acgcgaaatc aatattatta tatgtatgta tccaatgcga gcaggtagca cagtggttaa      1500
     tcctcacccc ccccttgccg acgacaaata gaagccggaa ccagcgcgtg ctcctctggt      1560
     cgctacaata agatcagctc gttatgatag cgtagcgcta tacgttgtat gctaca          1616
//
ID   Gypsy4-LTR_Dya repbase;    DNA;    INV; 364 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4_Dya;
KW   Gypsy4-I_Dya; Gypsy4-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-364
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1049-1049 (2009).
XX
DR   Genome; chrU; Positions 13091921 13091558.
XX
SQ   Sequence 364 BP; 96 A; 92 C; 101 G; 75 T; 0 other;
     tgaacaagcg tctggccttt ccggctggga cagagcaagg gacaagaggt tgtggctagt        60
     gaggcgtatg cctttgagag cccgccaatt gttcacccta gtctgagaac ggtgacgctt       120
     ccctaagccc tcgaccttcc ttctcgcgcg tcagcggcaa caccaggcga aggtccgacg       180
     ctacgacgag agagcagagg cgtccggaca attaaagtgc attgtaaact gagctcaaat       240
     aaagacccga gaacgaaact gcgagtgtta ttactggtaa ccgggtgatc acgttattat       300
     ataaatttgg tgggacgaac gcacaaactc tactgagcta gccgcacgta ttccgtagcg       360
     agca                                                                    364
//
ID   Gypsy4-NVi_I repbase;    DNA;    INV; 4196 BP.
XX
AC   AAZX01001018;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4-NVi;
KW   Gypsy4-NVi_I; Gypsy4-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4196
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1122-1122 (2007).
XX
DR   Genome; AAZX01001018; Positions   30547   26352.
XX
CC   Positions [3215-3670] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..2522
FT                 /product="Gypsy4-NVi_I_2p"
FT                 /translation="MGETTTTTSAGTTTTTTTIANTTAALRIDNYVHGEMK
FT                 WDRWIRKLEIGFMYHAIDESRKATCLLFHFGDKAFDSLCDFLNGVKPITLQ
FT                 YPELKEKLKDLFSPKVIEISENFKLSNRKQLPGEDIKTFTNALNNLSLQCN
FT                 FGTYKDKALLNQFVIGVRDTRLRRKFLETSDLTYEKAIQTVGALELTEQEN
FT                 STLSTATNTSVNSLHVDKKVVPRSQKNQKAKSKQARGKNNKNYKGQDKTQN
FT                 TTKYIQCYRCAGEHTAKHCTVNPNNLSCGQYGRRGHVTSVCLKGNNTTNFI
FT                 EKILLVEHFNARDKYTTTLPVNNTEVTFEIDSGTAVSLMSEEDARRLFKGT
FT                 TLFRTQTKLVSYCNMQINVTGFIKVEVKFANQIFNLHLYLTTNKRPPLLGR
FT                 EWMKAMLKCGNANQLFAEVSQITESNTSASDRKKIIENLLKQYSNCTKTDM
FT                 GKIKGITATLKLKENAQPVFLKARPAAFRLITLLDKEIGRLVKEDILIKVN
FT                 SSKFATPVVPVLKRDGTIRMCGDYSVTLNPNLIIDEHPLPTPDDMFTSVKD
FT                 SKHFAKIDLHQAYMQMEVDEASSALLTINTHRGLYRPTRLMYGVASACAIW
FT                 QREIENIFRDLEGMFVLLDDIRIAGRTQTEFLHRLEAVLRRLHDYNIKINQ
FT                 NKCEFFQNEIEFCGYVINEHVIHKSKAKMEAIEKMPRPSNVSEIRSFIGFV
FT                 NYYSRFIDNVSEILRPLNELLRKDTKFVWARECEAAFCKAKEAFVSDKCLT
FT                 FFNPKLGLILATDPSPTGVGAVLSHKFPDGTEKPIMYISQTLNKTQSKYA"
XX
SQ   Sequence 4196 BP; 1527 A; 859 C; 824 G; 986 T; 0 other;
     aaattggcga cgaggacggt aggaattgag aaatacatac aatcacaaga aaattactct        60
     acgaagcagc tccacgaggc tacctacata caaacgtaca acacgcaata cattgtacca       120
     tgggagaaac tacaactaca acatctgcag gtacaactac tacaactact acaatagcta       180
     acactacagc ggccttacga atagataatt acgtacacgg agaaatgaag tgggatagat       240
     ggatacgaaa actagaaatt ggatttatgt accacgccat agatgagtca agaaaagcga       300
     catgtttgct atttcatttt ggagacaagg cttttgatag cctgtgcgac tttctgaacg       360
     gcgtaaaacc aataacactt caatatccgg aacttaaaga aaaattgaaa gatttatttt       420
     cgccaaaagt gatcgaaatc tctgaaaatt tcaagttaag taatagaaaa caattaccgg       480
     gtgaggatat taagacgttt acaaacgctc taaataatct cagtttacag tgtaattttg       540
     ggacttacaa ggataaggcg ctactaaacc agtttgtcat cggtgtccga gatacaaggt       600
     tacggcgtaa atttttggaa acatccgatt taacctatga aaaagcaata cagacagtag       660
     gagcattaga gttaactgaa caagaaaact ctacgttatc tactgctaca aatacatcag       720
     tgaattcttt acacgtcgac aaaaaggtag tcccgcgttc ccaaaagaac cagaaggcga       780
     aatcaaaaca agctcgtggc aaaaacaata aaaattacaa agggcaagac aaaacacaaa       840
     atacgacaaa atacatacag tgctacagat gtgcaggtga acatacggcg aaacattgca       900
     ccgtaaaccc gaataatcta tcgtgtggac agtacggacg aaggggccac gtgaccagcg       960
     tttgtctcaa gggcaacaac acaacgaatt tcatcgagaa gattttgctg gtggaacatt      1020
     tcaacgcaag agacaagtac acgacaacgc tgcctgtcaa caacaccgaa gtcaccttcg      1080
     agatcgacag cggaactgcg gtttcactga tgtcggaaga agacgcaaga agattattca      1140
     aaggtactac attattccgc acgcaaacaa aattagtatc gtattgtaat atgcaaatta      1200
     acgtaaccgg ttttatcaaa gtagaggtaa agttcgcgaa ccaaattttt aacttacatt      1260
     tatatttaac tacaaacaaa cgcccaccgt tgttgggacg cgaatggatg aaggctatgt      1320
     tgaaatgcgg taacgcgaat caattatttg cagaagtttc acaaattacg gagtcaaata      1380
     catcggcgtc tgaccgaaag aaaataatcg agaatttgct caaacaatac agtaattgta      1440
     caaaaaccga tatgggaaaa attaaaggca ttacagccac tttgaaatta aaagaaaacg      1500
     cgcaaccagt atttctcaaa gcccgtccag cagcgtttag gttaattaca ctcctcgata      1560
     aggaaatcgg acgattagtg aaggaagaca tacttataaa agtaaattcg tcaaaattcg      1620
     caacaccagt agtaccagtg ctaaaacggg atggcacaat tcgtatgtgc ggtgactaca      1680
     gtgtcacgct aaatccgaat ctaatcatag acgaacaccc actccctact ccagacgata      1740
     tgtttacatc ggtaaaagac agtaaacact tcgctaagat cgaccttcac caagcataca      1800
     tgcaaatgga agtcgatgag gccagttcgg cattgcttac aataaataca caccggggcc      1860
     tatacagacc aacgcgactt atgtacgggg tcgcttcagc atgcgcgatt tggcaacgcg      1920
     aaatagaaaa tatcttccgg gacctagagg ggatgttcgt gcttcttgat gacatacgca      1980
     tcgcaggcag aacccaaacg gaatttttac ataggctaga agcggtacta cgtagattac      2040
     acgattacaa tatcaaaata aatcagaata aatgcgagtt tttccaaaac gaaatcgaat      2100
     tttgcggtta cgtgataaac gaacatgtca tccacaaaag taaagctaaa atggaagcta      2160
     tcgaaaaaat gccacgacca agcaacgtaa gcgaaattcg ctcttttatc ggatttgtta      2220
     attactatag ccgtttcata gacaacgtaa gtgagatatt acgcccgtta aacgaattat      2280
     tacgtaaaga tactaaattc gtctgggcac gagagtgcga ggcagcattt tgtaaagcca      2340
     aagaagcgtt cgttagtgat aaatgcctta catttttcaa cccaaaatta ggattaatac      2400
     tcgcgacgga tccgagccct acaggagtcg gtgcggtatt gtcacataag tttcccgacg      2460
     gaacggagaa accaatcatg tacatttcac aaacgctaaa taaaactcaa tcgaaatacg      2520
     cctagattga taaagaagcg tatgcgatcg tctttgcggt aaagaaattg caccgatacc      2580
     tctacggcgg aaaatttaca ctcattacgg accatcgtcc acttacacaa atattttcac      2640
     aaagaaataa cttacctata tacaatgcat tacgcatgca acattatgcg atttttctta      2700
     gagcctataa ttacgacata gtttataaac gatccgaaaa taattgtaac gcagatgggt      2760
     tatccagatt accgagtccg aaggcaacag aacatattga cgtaattgat gtacactaca      2820
     taaatacaat acaagcgatg ccggttacaa taacacaaat acgcgaggca atgcaaaaag      2880
     acgcaaacat tatgaaaatt gtaaaagcgt tacaaacggg taaacagctg tctgctaaag      2940
     gtacctggaa tgtaaaccca ctagaattta gtttagaaca agatttgctt gtacgcaatc      3000
     aaaaagttgt aatactacgc ctgtacaact acgcgacgca gtattacagg aactacatac      3060
     agggcacttc ggcgtggtta tgatgaaatc gctcgcaagg ggacactgct ggtggccagg      3120
     aattgacaca aatattgaag acatggtaca taactgtaca gattgccaga ctcataaaca      3180
     ccatgcccca gctgtggaaa aacacatatg ggatccaccg tcaaaaccct tcgagcgagt      3240
     tcattgcgat ttcgcgggac cattcttaaa taaatacttt ttgatcttgg tcgatgccta      3300
     cacgaagtgg cctgaagtac atataacacg agggcttacg agtgaggaga caattctagt      3360
     ttgtaaaaag atattcgcca ctttcggcat cccaaacatt ttcgtttctg ataacggtag      3420
     aaatttcacc tcacgattat tctctgaatt tatgaaattt tacgggatta cacataagct      3480
     gactgcacca tacaatccgt caactaacgg acaagcagaa cgctacgttc aaactattaa      3540
     agacgcgcta aagaaaatcg cgagttcaaa taaccttgaa aacaaacttc aagacatcct      3600
     cctacaatac agaataactc ctcactcagc caccggcata tcgccgtcag aactaatgtt      3660
     tagtagaaac attaaatcta agttagatct catgaatcct agtctaagta gtaagaatga      3720
     ttctccgtat aatgtaaata agcaaattcg cgatttcaaa attaaccaaa gagtgagcgc      3780
     gagaaattac gtaggagaca aaaaatggat cttcggcaga atttccaagc gtataggaaa      3840
     actacattat aatgtaactc ttgacgacgg gagagtctga aaaagacatg cgaatcaatt      3900
     aaataagatt ggaaataaca ttcctccctc tacactacgt tatgacaacg aagtcataga      3960
     aactccgccg aacgaacaaa taaaagttta tccgtcaatt tcgaaacaaa tacatgtaaa      4020
     ccgggactaa tcattgaata gtttaagcag aagctccgat tatgcgagtt gtagcaccga      4080
     tacatccatc gaggcacaac cgaaaagtag aggtagaggt agaggaaggg gttgcgtacg      4140
     acaaaaatca caaaaggaag aacaaattcc gggtggacct cgccgagaaa caggaa          4196
//
ID   Gypsy4-NVi_LTR repbase;    DNA;    INV; 246 BP.
XX
AC   AAZX01001018;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4-NVi;
KW   Gypsy4-NVi_I; Gypsy4-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-246
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1123-1123 (2007).
XX
DR   Genome; AAZX01001018; Positions   26351   26106.
XX
SQ   Sequence 246 BP; 68 A; 69 C; 57 G; 52 T; 0 other;
     tgccaagcgt cgaagtgcgc ctgcgcacgc acagaagtag cgagcgacga gaacgaagcc        60
     gcgagctcgt gccgagtcta acctacgagc agcgtcacag cgtgtacatg gccgttactc       120
     cgaatagaac gtctcaaaag gtgtattagg agcatcgtct gaataaagag gcatcacagc       180
     atattcatct gtgtcgacct tttcttctcc ttccctaacc ctcaagtatc acgttcaaat       240
     acaaca                                                                  246
//
ID   GYPSY40-I_AG repbase;    DNA;    INV; 4904 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY40-I_AG is an internal portion of retrotransposon GYPSY40_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY40-I_AG; GYPSY40-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY40_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4904
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY40_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 72-72 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY40_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY40-I_AG consensus was reconstructed after multiple
CC   alignment of 5-7 copies.
CC   The consensus encodes the 346-aa GYPSY40_AG1p gag-like
CC   polyprotein (pos. 222-1259) and the 1115?aa GYPSY40_AG2p
CC   pol-like polyprotein (pos. 1217-4561).
CC   The sequence of the LTRs flanking GYPSY40-I_AG is deposited as
CC   GYPSY40-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..1259
FT                 /product="GYPSY40_AG1p"
FT                 /translation="MPRFQPFPKVKALSFVKKMEPADLHTFMANFSAMEQR
FT                 LNALQLKNGELFRQLEQQTALASPGPSGGYQNDLFKVPDPLKSIPLFDGNK
FT                 MHLASWIATAKKTLSMYQPIVSTAVYAMYEQIVINKVEGKARDSLCVNGNP
FT                 TSFDEVIEVLNATFGDKKDMATYQTMLWSMKMDSSIHFYYKRTKEIAHDMK
FT                 CLARKKDLYCNHWQAVNDFIDQECLAAFIKGLNKEYFGYVQAAKPEDLESA
FT                 YSFLCKFQNLEHTNKILAPRAETKISYQKQFDPSSKNRNTNAFTNTIRKPN
FT                 SSEKLNSSRQKHTPMEVDTTRTGVKLFTHTSEDTEQHYDNGVNFQEVFAPL
FT                 PQR"
FT   CDS           1217..4561
FT                 /product="GYPSY40_AG2p"
FT                 /translation="RSKFSRGLCTSASEVNAVNGMPYILLHIDNKCAKILV
FT                 DSGSNKNFISPNVFPKSMEKKCKPISIANSNGTHYANKKVDTKMFNSDVTF
FT                 FLFKFHNYFDGILGYESLSELQAVLDTGKHKLIFPNTSIDLSIRQLNPETH
FT                 TVEANSVTQIKVPVSHESGNVFLPDDVRINDIVIPSGLYVAKNSNITALAS
FT                 NFGRKMVFFFTKPVVTFKVDKIAEVNNTIQTPDTISKTEIENMIKTDNLNQ
FT                 EEKEHLLKVLYENISIIPRNNEKLSCVTSVKHIINTVDEIPVHCKSYRYPH
FT                 IHKAEIQKQINEMLADGIIQHSISPWTSPIWIVPKKPDSNGAKQWRIVVDY
FT                 RKLNEKTIDDKYPIPNIEEILDKLGRSMYFTTLDLKSGFHQIEVELKDRPK
FT                 TAFSTEKGHFEFIRMPFGLKNAPSTFQRAMNNILNELIGTCCLVYLDDIIV
FT                 FGSSLQQHIENLQKVLHRLKQANLKIKIDKCEFLQKECEFLGHIVTQEGIK
FT                 PNPNKIEKIVSWPLPKTVTQIKAFLGILGYYRKFIKDFAKLTKPLTKCLKK
FT                 DSKIVHDEIFINCFRDCKQMLVMDPILKYPDFSKKFILETDASDFALGAVL
FT                 SQRFEDSKEHPIAYASRTLNDTECRYSATEKELLAIIYAIKHFRPYIYGNK
FT                 FEIRTDHKPLLWLRQKNDLNRKLLRWKLELEEFEFDIKYKKGTTNSNADSL
FT                 SRIEPAINANVSESLMTQHSSNTDDNDYIPSTERPINEFRNQIILEQTNES
FT                 STETLKQFPKYSKIIIKKPSFTTDNLVQIIQKYAAPNCLNGIYCDKNILKM
FT                 LHEVYKKYYSRAKSLKFRWTTKMLVDVTDELEQDQIIQTYHDTNHRGVTES
FT                 TKHLQRKYFFPQMKSKITKYINLCALCKKSKYERHPYKIKYKQTDTPKRPL
FT                 EIVHTDIFIMKDKHYLTFCDKFSRLALAVPIKTRYTVHILKGISTFIATVG
FT                 KPLLLIMDQECSFKSIAVQSFLNDNLIKYHYTSVAQSSSNGTVEIVHRTIR
FT                 EIHNILSQKESTKDLSESTKINLAVATYNDSNHSETNLTPNELFRGFRNDQ
FT                 PISSILDEHIQAKEKLYAVVHHKMLEQKEKRIAKLNEKREEPIGLSEGETV
FT                 FLRKKTI"
XX
SQ   Sequence 4904 BP; 1810 A; 919 C; 870 G; 1305 T; 0 other;
     ggcgcagccg ttcgggcctt tcctaagtgt gttttagttt accgagtgat aagtgcagaa        60
     acctgcgatt tactttgtgg tatcatccgg tgtaaaccat ctcccgaccc gtggacgact       120
     tgcggtgata ttcaggtaaa ctaaaacacc ctggaggatt tcaatccgga gaattggcac       180
     cgtacctact tccactgaaa taagcattgt gttaaaagct tatgcctaga ttccaaccct       240
     ttccgaaagt gaaagcatta tcttttgtga aaaaaatgga accagccgat ctccatacgt       300
     tcatggctaa tttttctgcc atggagcagc gtttaaatgc tcttcaatta aaaaatggcg       360
     aattattcag acagcttgag caacaaaccg cgttggcttc ccccggacct tcgggtggtt       420
     atcaaaacga tcttttcaaa gttcctgatc ctttgaaaag cattccatta ttcgatggaa       480
     ataaaatgca tttggcatca tggattgcca cagcgaaaaa aacactgagc atgtatcagc       540
     cgattgtttc taccgcagtt tacgctatgt acgagcaaat agttataaat aaagtagaag       600
     gcaaagctag agatagttta tgtgtgaacg gtaatcctac atcatttgat gaggttatcg       660
     aagtgttgaa tgctacgttc ggtgacaaaa aagatatggc tacctatcaa acgatgctgt       720
     ggtctatgaa aatggatagt tcgatccatt tttactacaa gcgtacaaaa gaaattgcac       780
     acgatatgaa gtgtttggca agaaaaaaag acttgtattg taaccattgg caggctgtaa       840
     atgattttat agaccaagaa tgtcttgccg cttttataaa agggctaaat aaagaatatt       900
     ttggctacgt gcaagctgct aaacccgaag atttggaatc tgcatattcg ttcctttgca       960
     aatttcaaaa tctggaacac acaaataaaa tactagcacc tcgtgccgaa acgaagattt      1020
     cttatcagaa acagtttgac ccttcatcaa aaaatcggaa tacgaacgca ttcactaaca      1080
     ccattagaaa gccgaatagt tccgagaagc taaacagcag taggcaaaag cacacaccga      1140
     tggaagtcga tacgacaaga acaggtgtaa aactattcac gcacactagc gaggatactg      1200
     aacagcacta tgataacgga gtaaattttc aagaggtctt tgcacctctg cctcagaggt      1260
     aaacgcagta aacggaatgc cttacatatt gttacatatc gataataaat gcgcaaaaat      1320
     tttggtcgat agtggatcga ataaaaattt catttcccct aacgtatttc ccaaatcgat      1380
     ggaaaaaaaa tgcaaaccaa tatcaatagc aaatagtaac ggcacgcatt acgcaaataa      1440
     aaaggtcgat acaaaaatgt tcaattcgga tgttacattt tttttgttca aatttcataa      1500
     ttattttgac ggcattctag ggtacgaaag cctttctgaa ctccaagctg ttttggatac      1560
     gggtaaacat aaacttatct ttcccaatac aagcatagac ctgagtatac gacaactcaa      1620
     cccagaaacg cacacagtgg aagccaattc agtaacacaa atcaaggtac cggtttcaca      1680
     cgaaagtggc aatgtgtttt tacccgatga tgttcgcatt aacgatatcg ttattccgtc      1740
     aggactttat gttgcaaaaa atagcaatat tacagcactt gcaagcaatt ttggaagaaa      1800
     aatggttttc ttttttacca aaccagtagt aactttcaaa gtcgataaaa ttgccgaagt      1860
     taacaatacg atacaaacac ctgatactat ttcgaaaact gaaatagaaa atatgattaa      1920
     aacggataat ttaaaccaag aagaaaaaga acatctgtta aaagtgcttt atgaaaacat      1980
     ttccatcatt cccaggaaca acgaaaaact atcctgcgtt acatccgtta aacacattat      2040
     taacacggta gatgagatac ctgtgcattg caaatcatac agatacccac acatccacaa      2100
     agctgaaatt caaaagcaga taaacgagat gcttgctgat ggcattatac agcattcgat      2160
     atctccgtgg acttcaccaa tttggatagt gccgaaaaag cccgattcaa atggtgcaaa      2220
     acaatggcga atcgtcgttg attatcgcaa acttaacgaa aagacgattg acgataagta      2280
     tccgatcccg aatattgagg aaatcttaga taagctaggt cgcagcatgt acttcacaac      2340
     actagaccta aaatctggtt ttcaccaaat cgaggtagaa ctaaaagaca gaccgaaaac      2400
     tgctttcagc accgagaaag gtcatttcga attcattcgt atgccttttg gtttgaagaa      2460
     cgccccttct acgtttcagc gagcgatgaa taacatacta aacgaattga tcggtacatg      2520
     ttgtttagtc tatttggatg acattatcgt tttcggaagc tcactgcagc agcatatcga      2580
     aaatttacag aaagttcttc acagattgaa acaggccaat ttaaaaatta aaatagataa      2640
     atgcgagttt ttgcaaaagg aatgcgaatt tttgggacat attgtgacgc aggagggtat      2700
     caagcctaat ccgaataaaa ttgagaaaat tgtatcgtgg cctcttccta aaactgttac      2760
     acaaattaag gcatttcttg gaattttagg gtattaccgt aaatttatta aagattttgc      2820
     taagttaacc aagccattaa caaaatgcct aaaaaaagat tctaagatag tacacgatga      2880
     aattttcata aactgcttta gggattgtaa acaaatgtta gttatggatc ctattctcaa      2940
     atatcctgat ttttctaaaa aattcattct tgaaacagac gcaagtgatt ttgcgttggg      3000
     tgcagttctc tcgcaacgat tcgaagattc aaaagaacac cctatcgcgt atgcttccag      3060
     aactctcaac gatacagagt gtagatattc tgccacagaa aaagaattgc tcgccattat      3120
     ttacgctata aaacatttca ggccatacat ttatggcaat aagtttgaaa tccgtacaga      3180
     ccataaaccc ttattatggc ttaggcagaa aaacgattta aataggaaat tattacgctg      3240
     gaaattagag ctggaagaat tcgaattcga tataaaatac aaaaaaggaa ctacaaatag      3300
     taacgctgac tcactctcac gaatagaacc agcaataaat gctaatgtat ctgaaagctt      3360
     aatgactcaa cattcatcta acacagatga taatgattac attccaagta cagaaagacc      3420
     gatcaacgaa ttcagaaatc aaattatttt agaacaaact aatgaaagta gtacagaaac      3480
     gttaaaacaa tttccaaaat attctaaaat aataattaag aaaccctctt ttactacaga      3540
     taatttagtt cagataattc aaaaatatgc cgcacccaat tgtttaaatg gaatatattg      3600
     tgacaagaac attttgaaaa tgctgcacga agtatacaaa aaatattatt ctagggctaa      3660
     atcattgaaa tttcgctgga ctacaaaaat gcttgtagat gtaacagatg aactagagca      3720
     agatcaaata attcaaacgt atcacgatac caaccataga ggagtaacag aaagtacaaa      3780
     acatcttcag agaaagtatt ttttccccca aatgaaatcc aagattacta aatacataaa      3840
     cctgtgcgcg ttgtgtaaaa aatctaaata tgaaagacac ccgtataaga tcaaatacaa      3900
     acaaacggat acacctaaaa ggcctttaga aatcgttcat accgacatat ttatcatgaa      3960
     ggataaacat tacctcacat tttgtgacaa gttctcacgg ttagctctgg cagtccctat      4020
     aaaaacacga tatactgtgc atatactgaa aggaatatcc acatttatcg ccacagtagg      4080
     aaaacctttg ctactaataa tggaccaaga atgcagcttc aaatcaattg cagttcaatc      4140
     gtttttgaac gacaatttga taaaatacca ctacacctct gtagcgcaat catcatctaa      4200
     tggcacggtt gaaattgtgc atagaacaat aagagaaata cacaacatat tatctcagaa      4260
     ggaaagcaca aaagacctat cggaatcaac aaaaattaat ttagcagtag ctacttataa      4320
     cgattctaat cattccgaaa ccaacctcac gccgaatgaa ttgttccgtg gttttagaaa      4380
     tgatcaaccg atatcatcga ttctcgatga gcacatacag gcgaaggaga aactttacgc      4440
     agtagtccat cataaaatgc tagagcaaaa agaaaagagg attgctaagt tgaacgaaaa      4500
     aagagaagaa cctataggcc tttcagaggg agaaaccgtg tttctgagga aaaaaacaat      4560
     ttgaaacatc aagagcgtta taaagaaatc caggtattag aagataaaga cgttaacttt      4620
     atagattatt gcggtagaaa atatcataaa gaaaaactca aaagaagatg tatgaactaa      4680
     aatattttgt aaaaataacc attagtaata cgcagcaata tagttagggt tagataggtc      4740
     tccaatatta tgttatagtc ctaagatttg atttataacg ttttaagaaa aaaagatgag      4800
     aaagaaccac aagcgggacg aagatagcaa acctacatgc cgaactaatt gcatacggtg      4860
     aaactccaaa gtgccgagga cgacactttt ctaccccccc gaga                       4904
//
ID   GYPSY40-LTR_AG repbase;    DNA;    INV; 167 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY40-LTR_AG is an LTR of retrotransposon GYPSY40_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY40_AG; GYPSY lineage; GYPSY40-I_AG; GYPSY40-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-167
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY40_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 73-73 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY40-LTR is a long terminal repeat of GYPSY40_AG (its internal
CC   portion is deposited as GYPSY40-I_AG).
XX
SQ   Sequence 167 BP; 53 A; 43 C; 34 G; 37 T; 0 other;
     agttatatgc gtggaacaca aatacaggtg cgacatcact gcaacagcct cgcacccatg        60
     ccgatacgat aggagccgat tccgtcgcgt cagatcggta tcagcatcca agcgataagc       120
     acgcaataat cattttaaat aaaagctgtg gttccatact cataact                     167
//
ID   GYPSY41-I_AG repbase;    DNA;    INV; 6601 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY41-I_AG is an internal portion of retrotransposon GYPSY41_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY41-I_AG; GYPSY41-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY41_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6601
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY41_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 74-74 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY41_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY41-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 360-aa GYPSY41_AG1p gag-like
CC   polyprotein (pos. 501-1580), the 1180?aa GYPSY41_AG2p
CC   pol-like polyprotein (pos. 1538-5077) and the 519-aa GYPSY41_AG3p
CC   env-like polyprotein (pos. 5014-6570).
CC   The sequence of the LTRs flanking GYPSY41-I_AG is deposited as
CC   GYPSY41-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           5014..6570
FT                 /product="GYPSY41_AG3p"
FT                 /translation="NSYNGKKYQEEQKQVKENQVPVIRSFRFLYLSQAWRS
FT                 KMQYFPITFMLILLTQLSQSKELEIIDLNRQPIFFLKTRTCRLQTGSIKFI
FT                 HPINMLTLENAINTITHFSYENINNELKEIVRLKVKLLYSNFQQLKPKHRT
FT                 ARSLEILGTAWKWIGGSPDADDLRIINTTMNELTENNNKQYRINKQFDHRL
FT                 RTLTDTINQLTKEREQVMLNELETIKTIMNIDIINHVLEEIQEAISWTKVS
FT                 VVSNKILSSPEINSIKTILEDQGVKVELPDEALKLVQPIIAINSNSILYIL
FT                 KIPQLADEEATMLEVFPLSIDNRIIVETPTHLIKTRNKVFKPAKPDEYIQN
FT                 QYREYIDKCTSNLILGRKSDCSTARKNNTTIKLISDGLIIVDNAKGAALSS
FT                 SCGPDDKLVSGNLLIRFNDCEVTIMNQTFSSKTISSTVEPYWGAVSITEVR
FT                 WQHHKPMIRQDAFENIGTMQHSYLQQFNSAWNWSLLGGVLVSTIFTLSLAI
FT                 FVFTFYKRSIRTIADVLPKIADA"
FT   CDS           501..1580
FT                 /product="GYPSY41_AG1p"
FT                 /translation="MKATERFDSHRDLSTSDNLETEGDKMEEIATQLVEMM
FT                 RAITSLQNQYTALSASTSSSNAGNNRAFDDYFRIPDPIKSLPTFEGNRKQL
FT                 ASWLSTADNTLALFKDLVPAAVYQMYVTAVTNKICGKAKDILCLSGSPQNF
FT                 DEIKEILISSLGDRQELSTYKCQMWQNKMTDGMSIHKYYHQTKEIVQNIKT
FT                 LAKQNEQYRTNWVAINAFIDEDALAAFIAGLRGNYFGHAQAARPKDIEDAY
FT                 AFLCKFKATEQNAGSLTKNVQTPSNKPPFKNKFNQNESTSYNKPTKAISEK
FT                 KFSIKNSDKPEPMDVDASMRSKYAQNKKQFHNNEVETEQESNDSDSDDETD
FT                 HFNEVNFRLAGSLKNNT"
FT   CDS           1538..5077
FT                 /product="GYPSY41_AG2p"
FT                 /translation="RSKFSPSRKSEKQYLNSKKKYNYLPYLRTKQGLNLLI
FT                 DSGANKNLIQPGVLKTKKEIKQIEITNIVGKQIIDTCGKTNLLYKEIPSQK
FT                 YYELKFHNFFDGLIGSQFLAENEAILNYRKQTLEISKVIMPFEKYFPNEKN
FT                 YNHVVTLPTNTDGEWIVYEPTKLCKKITVQPGVYSAKNKKTTILLQTNRPK
FT                 PPNIQHKALEITVNNFETVTPLPMKPESKITSEMLSEIIRTSHLSTLEKDH
FT                 LFRTIIKNQNVLLKAGEKLSATPDVKHKITTTNDAPVFTKSYRYPHAFKND
FT                 VEEQINELLRNGIITHSTSPYSSPIWVVPKKVDASGKRKIRVVIDYRKLNE
FT                 KTIDEKFPIPQIEEILDSLGKSVYFTTLDLKSGFHQIEMDSNDKGKTAFST
FT                 AQGHFEFNRMPFGLKNAPAAFQRAMNSVLTGLIGNICFVYLDDIIIIGKNL
FT                 ENHIENLNTVLERLSKFNLKIQLDKCEFLRKETEFLGHVITQEGIKPNPDK
FT                 ITKILEWKLPSTQKEIKQFLGLSGYYRRFIKDYSKLTKPLSKCLKKDTKIN
FT                 TQDEEYKTSFNSLKQIIASDQILAYPDFERPFILTTDASNYALGAVLSQIQ
FT                 EGKERPIAFGSRTLNEAESRYSTTEKEALAIIWSVQKYKSYLYGHKFTLVT
FT                 DHKPLTFIKTSTKNSKILRWRLELENFDFDIQYKEGKANVVADALSRKTEI
FT                 LTNTNINQDSSISGTPKNNVSNTIDVNFEESSSISESLQHNNPSPNNTNSD
FT                 SQTMHSADTSDDYFIHFSERPINYYRNQIIFRKSHITTDITETPFNNYKRA
FT                 IICRNDFDELTILDSLKNFHNNKQTAIMAPDESTISLIQSVYRQYFNQHGH
FT                 FVLTHLQVEDVSNEQRQDIIIAKEHERAHRGIHEVHNQLTRCYFFPHMMTK
FT                 IKKLINLCKICNVHKYERKPYNIKITPRPIETTPFSRVHIDIFGIDKHNYL
FT                 TFVCAFSKFLQTIEIPSRNLTDIRKALAHFITTFGAPRKIICDHETTFRSL
FT                 QLQSFLANLGTELEFSSSSETNGQVERTHSTIIELFNTNKHKFRDLSSPEI
FT                 IKVVTALYNETVHSSTGFTPNEIIFNRTSNRNPEQIIQTTRNIYEKVSQKL
FT                 HNASRNMQKYNDEKETPPEIETGKQIFVKKGVRKKLDPRFNEKTCLNANDK
FT                 TVTMARNIKRNKNKLRRIKSQ"
XX
SQ   Sequence 6601 BP; 2545 A; 1420 C; 1067 G; 1569 T; 0 other;
     ggcgcagccg tccggagtga tttaagtgag tgtaattgtg tcaaaagtgg aaaagtaaga        60
     gactggaaaa actctaacta aagtgatccc gcaagtgata aaagttatcc aacgcatccg       120
     gagcaacaca ggaagacaac atcgatcgaa gctgtattcc gccgaggagt tgaggatccc       180
     ccacgcagtt acccacctgg aaggaaaacc agcatcgtta aatcacgaac ccgcgacacg       240
     acagcaagaa aaaaaaatcg taagtaattc ttttattttc ataaaaagtg caacagtgtt       300
     tcagtggaaa tcagtgcttg aaaaaccagt tttactcgcg tccttaggaa atactaccag       360
     ataggtttct taggtagaaa gtgacttact accagatagg agtagctttt tctcatcgtg       420
     ggagtactac cagatagggc ccgtgataca aagaaaagaa agagatcaac ccagtgtcgt       480
     acacaacgaa aaattcgtac atgaaagcaa ctgaaaggtt cgattctcac agagatcttt       540
     caacctccga taatcttgaa acagaaggag acaaaatgga agagatcgca acacaattgg       600
     tcgagatgat gcgagccatc acttctctcc agaaccaata cacagcgcta agcgcaagta       660
     cctcatcaag taatgcaggt aataataggg catttgacga ttattttcgc attcctgacc       720
     ctataaaatc attgccaact tttgagggca atcggaaaca actagcatca tggttatcaa       780
     ccgccgataa cacactagct ttgtttaaag acctagtacc tgcagcagtg taccaaatgt       840
     acgttactgc agtaacaaac aaaatttgtg ggaaagcaaa agacatccta tgtctttcag       900
     gaagtccaca aaatttcgac gaaattaaag aaattttaat ttcttcgcta ggtgaccgac       960
     aagaattgtc cacctataaa tgccaaatgt ggcaaaataa aatgaccgat gggatgagta      1020
     ttcacaaata ttaccaccaa actaaagaaa ttgtgcaaaa tattaaaacc cttgcaaaac      1080
     aaaacgaaca ataccgcaca aattgggttg caatcaatgc attcattgat gaagacgcac      1140
     ttgctgcatt catcgctgga cttagaggaa attactttgg gcacgcccaa gccgctcgac      1200
     ctaaagacat tgaggatgcg tatgcattcc tttgtaagtt caaagcgaca gaacaaaatg      1260
     caggcagcct taccaaaaat gttcaaaccc catccaataa accacctttt aagaataaat      1320
     tcaaccaaaa tgaaagtacc agttataata aaccaactaa agccatttca gaaaagaaat      1380
     tttcaatcaa aaactcagat aaacctgaac caatggatgt agatgcttca atgcgcagta      1440
     aatacgcaca aaataaaaag caattccaca acaacgaggt tgaaacggaa caagagtcca      1500
     atgacagtga cagtgatgat gaaactgatc attttaacga agtaaatttt cgcctagcag      1560
     gaagtctgaa aaacaatact taaattccaa aaagaaatac aactatctcc catatttacg      1620
     cactaaacaa ggtctcaatc tattgatcga ttccggcgca aataagaatc ttatccaacc      1680
     aggtgtttta aaaacaaaaa aggaaatcaa acagatcgaa atcactaaca tagtgggaaa      1740
     acaaattata gatacctgcg gaaaaacaaa ccttttatac aaggaaattc cctcacaaaa      1800
     atattacgaa ttaaaattcc acaatttttt cgatggattg attggctcac aatttttagc      1860
     agaaaatgaa gctattctca attaccgaaa acaaacactt gaaatttcaa aagtaattat      1920
     gccatttgaa aaatatttcc ctaacgagaa aaactataac catgtagtaa ctctcccaac      1980
     caatacggac ggagaatgga ttgtttacga accgactaaa ctttgtaaaa aaattacagt      2040
     tcagccaggc gtatactcag ccaaaaataa aaaaactaca attttactac agacaaatag      2100
     accaaaaccc cctaatatac aacataaagc gttagaaatt acagtaaata atttcgaaac      2160
     tgttactcct ttacccatga aacccgaatc aaaaattaca agcgaaatgc tgagcgagat      2220
     aattcgtaca tctcatcttt caactttgga aaaagaccat ctttttagaa caattattaa      2280
     aaatcagaac gttctattaa aagcaggaga aaaactttca gctacaccag atgttaaaca      2340
     caaaataact accactaatg atgcaccagt ttttacaaaa tcatatcgat atccacacgc      2400
     atttaaaaat gacgtagagg aacagattaa tgaactacta cgaaatggta tcataaccca      2460
     ttcgacaagc ccctattcct cgccaatatg ggtagtcccc aaaaaggttg atgcctcggg      2520
     aaagagaaaa ataagagtag taatcgacta ccgcaagttg aatgaaaaga ccattgacga      2580
     aaaattcccc atcccacaaa ttgaagaaat actagacagt ttgggtaaat cagtttattt      2640
     tacaacactt gacctcaaat caggattcca ccaaatcgag atggattcta acgataaagg      2700
     gaagacagcg ttttctacag cacaaggcca ctttgagttc aatcgaatgc cttttgggtt      2760
     gaaaaacgcc ccagctgctt ttcaacgcgc tatgaacagt gtgctaacag gactgatagg      2820
     aaatatttgt ttcgtgtacc tcgatgacat tataatcatc ggtaaaaact tggaaaacca      2880
     catagaaaat ctaaacacag ttttagaaag gctttcaaaa tttaacctca aaattcaact      2940
     agataagtgc gaattcctta gaaaagaaac agaattttta ggacatgtta ttactcagga      3000
     aggtataaaa ccgaatccag ataaaatcac caaaatccta gaatggaaac tgccatcaac      3060
     acagaaagaa atcaaacaat tcttaggttt atcaggctac tatcgcagat tcatcaaaga      3120
     ctattcaaaa ttaacaaaac ctctttcaaa atgcctaaaa aaggatacta agataaacac      3180
     gcaagatgaa gagtataaaa catctttcaa tagtctaaaa caaattatcg cttcggatca      3240
     gatattagca taccctgatt tcgaaagacc gttcattcta acaaccgatg caagcaacta      3300
     cgctcttggc gcagttttat cgcaaatcca agaaggaaaa gagcgaccaa ttgcattcgg      3360
     aagcagaaca ttaaacgaag ccgaatccag atactccact acagaaaaag aagccttagc      3420
     gattatttgg tctgtccaaa agtataaatc ttatttgtat ggtcataaat tcacactcgt      3480
     tactgaccat aaacctctta cattcatcaa aacatccact aaaaactcaa aaattcttcg      3540
     ctggcgccta gaactcgaga atttcgattt cgacatccaa tacaaggaag gaaaggccaa      3600
     cgtagtagca gacgcgctaa gcaggaaaac ggaaattctt acaaatacca atattaacca      3660
     agattcttcc atttcaggca ctcctaagaa caatgtttcc aatacaattg acgtcaactt      3720
     cgaagaatca tcatctattt cagaatccct tcagcataat aacccctcac cgaacaatac      3780
     taactctgat tcacaaacca tgcattcagc tgatacatcc gacgattatt ttatccattt      3840
     ctccgagaga ccaatcaatt actacagaaa tcagataatt ttccgaaaat cccatataac      3900
     aactgacatt acggaaaccc cttttaacaa ctataaaaga gcaattattt gcagaaatga      3960
     ttttgacgaa ttaacaatac tagattctct aaaaaatttc cacaataaca aacaaaccgc      4020
     gattatggca ccggatgaat caactatttc actcattcaa tccgtttatc gacaatactt      4080
     caaccaacat ggacattttg ttcttacaca cttacaagta gaagacgtta gtaacgaaca      4140
     acgccaagac atcatcatag ctaaagaaca cgaacgcgcc catagaggta ttcacgaagt      4200
     tcataatcaa ctaacaagat gctatttctt tccacacatg atgacaaaaa ttaaaaaact      4260
     aattaatctt tgcaagatct gtaacgtaca caagtatgaa cgcaaaccgt ataacatcaa      4320
     aatcacaccc cgacctattg aaacaacccc tttcagtcgc gttcacatcg acatctttgg      4380
     aatcgacaaa cacaactact taacgttcgt atgtgctttt tcaaaatttt tacaaaccat      4440
     agaaattccg tccaggaact tgacagacat aagaaaagct cttgctcatt ttattacaac      4500
     gtttggcgca ccgagaaaaa ttatttgcga tcacgaaacc acatttagaa gtcttcaact      4560
     tcaatcattt ttagccaatt taggaacaga attagaattt tcttcatcct ccgaaaccaa      4620
     tggacaggta gagcgaacac acagtacaat tatagaattg ttcaacacca ataaacacaa      4680
     gttcagagat ttaagctctc cggagatcat aaaagtagtg acagcactat acaacgaaac      4740
     agttcactcc tcaacaggat tcacgcccaa cgaaatcatt tttaacagaa ctagcaatcg      4800
     gaatccagaa caaataattc aaaccactag aaacatttac gaaaaagtat cccaaaagct      4860
     ccacaatgca agtagaaaca tgcagaaata taacgatgaa aaagaaacac caccggaaat      4920
     agagacaggt aaacagatat ttgtaaagaa aggcgttagg aaaaaattag acccgcgatt      4980
     caacgaaaaa acttgtctta atgcgaatga taaaacagtt acaatggcaa gaaatatcaa      5040
     gaggaacaaa aacaagttaa ggagaatcaa gtcccagtaa tacgttcttt ccgttttctt      5100
     tatctttccc aggcttggag atcgaaaatg caatactttc cgataacatt catgctaatc      5160
     ctgcttacac aactctcgca aagtaaagaa ttagaaatca tagatttgaa caggcaaccg      5220
     atattttttc ttaaaaccag aacttgtaga ttacaaacag gaagcataaa attcatacat      5280
     cctataaaca tgttaaccct tgaaaatgct attaacacca ttacacactt ttcgtacgaa      5340
     aacattaata acgaacttaa agaaattgtc agactaaaag taaaattatt gtactcaaac      5400
     ttccaacaat taaaacctaa acatagaaca gctagaagtc tagaaatctt aggaacagct      5460
     tggaaatgga taggaggaag tcctgacgcc gacgacctca gaatcatcaa caccacaatg      5520
     aacgagctaa ccgagaacaa caacaaacag taccgaatca acaaacagtt cgatcacagg      5580
     ctacgaaccc tcactgacac cataaatcaa ttgacaaaag aacgagaaca agtaatgctg      5640
     aatgaactag aaaccattaa aaccataatg aacatcgata tcatcaacca tgttttagaa      5700
     gaaattcaag aagcaatcag ttggactaaa gtatcagtag ttagcaacaa gattctatca      5760
     tcaccagaga taaactccat caaaaccata ctagaagacc aaggagtaaa agtcgaatta      5820
     ccagatgaag cgctaaagct agtacaacca attatcgcga tcaactcgaa ttcgatactc      5880
     tacatactga agatccctca gctagctgat gaagaagcaa caatgcttga agtatttcct      5940
     ctcagtatcg ataacagaat catagtagag actccgacgc accttataaa aacacggaac      6000
     aaagtgttca aaccagccaa acctgatgaa tacatccaaa accaatacag ggagtacatc      6060
     gataaatgca catccaatct catcctaggg agaaaaagcg attgttctac tgcaagaaag      6120
     aacaacacga cgataaagct aatatccgat ggacttatca ttgtcgacaa cgcaaaagga      6180
     gcagccctga gttcaagctg tggacccgat gataaactcg tctccggaaa tcttctgata      6240
     cgcttcaacg attgcgaggt aacgataatg aatcaaacat tttcttctaa gactatctcc      6300
     agcacagtag agccatattg gggagcagta tccatcaccg aagtcagatg gcaacaccat      6360
     aaaccgatga taaggcaaga cgcattcgag aacattggaa cgatgcagca ttcttatctc      6420
     cagcagttca acagcgcatg gaattggagc ctacttggag gagtattggt ctcaacaatc      6480
     ttcacgttat ccctggcgat cttcgttttc acgttctaca aacgatcgat acggaccatc      6540
     gcagacgttc taccgaaaat agcggacgca tgaggacacg ctcttcttca cccccccgag      6600
     g                                                                      6601
//
ID   GYPSY41-LTR_AG repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY41-LTR_AG is an LTR of retrotransposon GYPSY41_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY41_AG; GYPSY lineage; GYPSY41-I_AG; GYPSY41-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-311
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY41_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 75-75 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY41-LTR is a long terminal repeat of GYPSY41_AG (its internal
CC   portion is deposited as GYPSY41-I_AG).
XX
SQ   Sequence 311 BP; 99 A; 67 C; 79 G; 66 T; 0 other;
     agttacgtag accgaatagc tgagtccacg taataagaag ccaacacgtg gacacgcgca        60
     ccgagcaacg accgcatcac cggaacacgc gcgcatagca acatgacgcg catagcaacg       120
     ggaaccggca cgtggacacg cgcataccgg atatgcagag tcagcagcta tagggtagaa       180
     tcgaaggcta ggtgcattgt agaatttaag aaataagtta gttgtaattt ggatcagctc       240
     agtgtaagaa gcgcttgcgc ttaagcaata aagttttttt ttatgaaacg tgaagccttg       300
     cacttataat t                                                            311
//
ID   GYPSY42-I_AG repbase;    DNA;    INV; 5015 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY42-I_AG is an internal portion of retrotransposon GYPSY42_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY42-I_AG; GYPSY42-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY42_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5015
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY42_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 76-76 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY42_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY43_AG, GYPSY44_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY42-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 373-aa GYPSY42_AG1p gag-like
CC   polyprotein (pos. 481-1599) and the 1138?aa GYPSY42_AG2p
CC   pol-like polyprotein (pos. 1560-4973).
CC   The sequence of the LTRs flanking GYPSY42-I_AG is deposited as
CC   GYPSY42-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           481..1599
FT                 /product="GYPSY42_AG1p"
FT                 /translation="MHVNSSANVKPRIELSVLFKNLSASEESSDSELSGEY
FT                 SNIPLQDSSLPNLDQLNINTIEMEPTEQLKIMNQTIADLQEKIAVLTIQQS
FT                 QPSIDVASFFRIPDPIKSLPSFDGNRKQLSTWLTTTEETLNLFKDRVTGEV
FT                 FKMYLTAVINKIEGKARDILCLAGSINDFESLKEILFDAFGDRQELSTYKC
FT                 KLWQNKMVDGMTIHKYYQKTKEIIQCIKTIAKQTQAYKDNWAVINQFIDED
FT                 GLAAFISGLKGMYFGHIQAARPKDIEEAYAFLCKFKSHEITADCMVQKPPN
FT                 QQKNSFFQNNRTATTQKSHFAQNQNINREPYPQPMEVDNSMRSRLTLNKRT
FT                 INNFEVASQDDNSANCEQNFHLDSPSTSIT"
FT   CDS           1560..4973
FT                 /product="GYPSY42_AG2p"
FT                 /translation="TKFSLGFAINQHNIKYCSNFLPYIKVKDSKTNRQIRM
FT                 LIDTGANKNIIRPGIIKNTIKTEQVSIKNIFGTKIIQEKAICKLLGPNIPA
FT                 QTYYIMEFHDFFDGIIGTEFLSQTNTVIDFKNNVVVINETKIWFEKLFSSK
FT                 KFYHHTISIETDQNGDWCVPTFENLSENIIIEPGLYSSIDNKTFVKVLSTS
FT                 KTTPHIPKLHFTVNNFETLTPIPSACNDIPTKKIIETLIRTDHLSFYEKSK
FT                 LFETVIKNHNVLLKLNEKLTSTTIIKHKINTTDDLPVYTKTYRYPHVYKQD
FT                 VETQIRDMLDSGIIQPSTSPYSSPIWVVQKKMDASGKKKVRVVIDYRKLND
FT                 KTINDKFPMPEIEDILDSLGKSQYFTILDLKSGFHQIEMHPEHQEKTAFST
FT                 SHGHFEFTRMPFGLKNAPATFQRAMNNILAELIGKICYVYLDDIVIVGTNL
FT                 EDHLKNVSTVLGRLAQFNLKIQLDKCEFLKRETEFLGHIISPDGIRPNPEK
FT                 VKKILDWPIPSNEKQIRQFLGLSGYYRRFIKDYSKITKHLTKYLKKDQTIN
FT                 INDPEYIDSFSKLKETIASDQILAYPDFNLPFVLTTDASDFAVGAVLSQIQ
FT                 NKVERPIAFASRTLNKAEINYSTIEKEALAIIWAIRKYKAYLYGNEFKLFT
FT                 DHKPLTFIKTSIKNNRILNWRLELENYQYSVEYKEGRANVVADALSRKTEN
FT                 TNEINSTNTTILATNHSGSTSDDFYIKSSERPLNYYRNQIVFELVAQHEDL
FT                 IEIPFPNYKRTIIRRTDYDESKITDILRKFHNGKQTAILASQNLIQIIQNS
FT                 YKNHFSCSGYIVMTHSQVKDVASVEEQNQLITREHERAHRGIHEIENQMKR
FT                 SYFFPKMHDRIKSAINACPVCNMHKYERKPYNIKISPRAATDKPMERGHMD
FT                 IFSINSKSFLSLADSFSKFAQMIPIDTKNLVDVKNALAKYFSTFGIPLQII
FT                 TDHETTFRSIQLKNFLCNLGCSLTYASSSESNGQVEKTHSTIIEIYNTNKH
FT                 KFVDMDTEALIPIAVSLYNATVHSATGYTPNEILFNQTNEMRPITIHEQAE
FT                 KIFANAKTNIERSRQNQMKGNIRKETPPLIREGQEVYVKPNIRKKLDPRAR
FT                 NTTVNNVTDRTFENSRHIKRHKNKIHRIRS"
XX
SQ   Sequence 5015 BP; 1884 A; 947 C; 827 G; 1357 T; 0 other;
     ggcgctgtag acaatccaga gtgcaaaaat agtggcaaat aacgaattaa tcctcgttac        60
     gtaagtggtt cccgcattca gcatcaacag ctataggatt acatccgctg ttcgatttga       120
     gggccccccg gcacacacct ggtaccggac catcggattt ttttttatat ccaaagcacg       180
     tgagtacgtt tcatcttttc atagtgaatg tgtattcggt tagtttcaag cactaccaga       240
     taggcttgaa ataactacag tgtatttgtg tccatgtgag tttgcgatcg attttttatt       300
     tatcgtcgta aactatctgt attgatacta ccagataggt caacagatta tcgaagaaga       360
     atcgtcctcg tgttgtccgc gagtgaactt attgttagta gtgtgcgttg tgtgtattgt       420
     gcgaatagca agagcacgag gcatcggttg ccgctgctta taacaattgt atcgacacgc       480
     atgcatgtga acagttcagc taacgtaaag cctcgaatcg agcttagcgt tttgttcaaa       540
     aatctatcgg cttcagaaga gagttcagat tcggaattat ccggagaata ttcgaatata       600
     cctttacaag acagttcact tcctaattta gaccaactca atattaacac tatagaaatg       660
     gaaccaacag agcagcttaa aattatgaat caaacgatag cagatttgca agaaaaaatt       720
     gcagttttga caatccagca aagccaacca tctatcgatg tagccagttt ttttcgcatc       780
     cccgacccta taaaatcatt gccatcattt gacgggaatc gcaaacaatt atccacatgg       840
     ctcaccacta cagaagaaac acttaacctt ttcaaagata gggttactgg tgaggttttt       900
     aagatgtact taacggcagt aataaataaa atcgaaggta aagctaggga tattctttgt       960
     ttagccggaa gtatcaacga ttttgaatca ttaaaagaaa ttctttttga tgcatttggg      1020
     gatcggcagg aattgtcgac ttataaatgt aaattgtggc aaaacaaaat ggtcgacgga      1080
     atgacaatac ataagtacta ccaaaaaaca aaagaaataa ttcaatgcat taaaactatt      1140
     gctaagcaga cccaagctta taaagataac tgggctgtaa ttaatcaatt tattgacgaa      1200
     gatggattag ctgcttttat ctcaggattg aaaggaatgt attttggcca tatacaggca      1260
     gcccgcccca aagacattga agaggcttat gcttttcttt gtaaatttaa atcacacgaa      1320
     ataacagcag actgcatggt ccagaaacca cccaaccaac aaaaaaatag tttctttcaa      1380
     aataatagaa cagctaccac tcaaaaaagc cattttgctc aaaatcaaaa catcaatagg      1440
     gaaccttatc cacaacctat ggaagtggat aattcaatgc gaagcagact cacattgaat      1500
     aaaagaacga ttaataattt tgaggttgct tcacaagatg ataactctgc aaattgtgaa      1560
     caaaattttc acttggattc gccatcaacc agcataacat aaaatactgt tctaattttt      1620
     taccttacat aaaagtgaag gacagcaaaa ccaacaggca aatccgtatg ctcatagata      1680
     caggagcaaa taaaaatatt ataagacctg gtattatcaa aaacacaatt aaaacagaac      1740
     aagtgagtat taaaaatatt tttggtacta aaattattca agaaaaagct atttgtaagc      1800
     ttttaggccc aaacatacca gcacaaactt attacattat ggaatttcac gatttttttg      1860
     acggcataat aggtactgaa tttttgagtc aaacaaacac cgtcatagat ttcaaaaaca      1920
     atgtcgtagt tatcaacgaa acaaaaattt ggttcgaaaa attattttcc tcaaaaaaat      1980
     tttaccacca cacaatatca attgaaaccg atcaaaatgg tgattggtgt gttccaactt      2040
     ttgaaaattt atcagaaaat ataattatag aacctgggtt atattcttct atagataata      2100
     aaactttcgt taaagtatta tctaccagta aaacaactcc ccacatacct aaattgcatt      2160
     tcactgtaaa taatttcgaa acattaacgc ctattccatc ggcttgtaat gacattccaa      2220
     caaaaaaaat aatcgaaaca ttaataagaa cagatcatct atcattttac gagaaatcga      2280
     aattgttcga aactgtcatc aaaaaccata acgtcctttt gaaattaaat gaaaaactaa      2340
     ctagtactac aataattaaa cataaaataa acactaccga tgacttgcct gtttatacta      2400
     aaacataccg ctacccacat gtctataagc aagatgttga aacccaaatc agggatatgc      2460
     tcgactctgg cattattcaa ccttcaacaa gtccttattc atcgccaatt tgggtggtgc      2520
     aaaagaaaat ggatgcatct gggaaaaaga aagtacgggt tgtcatagac tacaggaaat      2580
     taaatgacaa aacgataaac gataagtttc caatgccaga aattgaagat attcttgata      2640
     gcttaggtaa atcacaatac ttcacgatat tagatctgaa atctgggttt caccagattg      2700
     agatgcaccc tgagcatcaa gaaaaaactg ctttctcgac aagccatggc cattttgaat      2760
     ttactagaat gccatttggg ctgaaaaatg cgccagctac atttcaacgt gccatgaata      2820
     acattttagc tgagcttatt ggcaaaatct gttatgttta cttggacgat atcgtaattg      2880
     taggaacaaa tttagaagat cacttgaaaa acgtctcaac agtactcgga agattggcac      2940
     aatttaattt aaaaatacag ctagacaaat gcgaattcct aaaaagggag accgaatttc      3000
     ttggtcatat aatatctcct gatggtataa gaccaaaccc cgaaaaagtg aaaaaaatat      3060
     tggactggcc tataccttcc aatgaaaaac aaatccgaca atttcttgga ttatcaggat      3120
     attatcgtcg tttcatcaaa gattattcaa aaattactaa gcatttaact aaatacttaa      3180
     aaaaagatca gactattaat atcaatgacc cggagtatat cgattcattt tctaaattaa      3240
     aagaaacaat agcatcagac caaatactag catatccgga tttcaattta cctttcgttc      3300
     ttaccaccga cgcaagtgat tttgctgttg gtgcggtact ttcgcaaata caaaacaaag      3360
     ttgaaaggcc cattgccttt gccagtagga cattaaataa ggcagaaatt aattactcta      3420
     ctatagaaaa ggaggcacta gcaataattt gggcaatccg caaatacaaa gcttatcttt      3480
     atggaaatga gttcaaactt ttcactgatc ataaacctct aacgtttatt aaaacctcta      3540
     tcaaaaataa tagaatctta aattggagac tagaattaga aaactatcaa tattctgtag      3600
     aatacaaaga gggaagagct aatgttgtag cagatgccct tagcagaaaa actgaaaata      3660
     ctaacgaaat taattcaacc aatacaacaa ttttagctac aaatcattca ggaagtacgt      3720
     cagacgactt ttatattaaa tctagcgaaa ggccattaaa ttactaccgc aatcaaatag      3780
     tttttgaatt agttgctcaa catgaagatt taatagaaat accatttcca aattacaaaa      3840
     gaaccattat acgtagaacc gactacgatg aatcaaagat aacagacata ttacgtaaat      3900
     tccataacgg gaaacaaacg gccattcttg cttcacaaaa cctaatacaa ataatacaaa      3960
     actcttataa aaatcatttt agctgcagcg gttacatcgt tatgacacac tcccaagtca      4020
     aagatgtggc atccgttgaa gagcaaaacc agctaataac aagagaacac gagagagctc      4080
     accgaggtat acacgaaatc gaaaatcaga tgaagaggtc atactttttc ccaaagatgc      4140
     atgatcgaat caaatctgct atcaacgcat gccctgtgtg caacatgcac aaatacgaac      4200
     gaaagccgta taacatcaag atctcaccga gggcagccac cgataaaccg atggagcgtg      4260
     gtcatatgga tatattttcc ataaactcga aaagcttcct ttcattagca gattcgttct      4320
     caaaattcgc gcaaatgatt cctatagata caaaaaacct ggtggacgta aagaatgcgt      4380
     tagccaaata ttttagtact tttgggattc cattacaaat aattaccgat cacgaaacaa      4440
     cgttcagatc tatccaactt aaaaatttct tatgcaattt aggttgctcg ctgacatacg      4500
     catcatcatc agagagcaat ggccaagtag aaaaaacgca ctcaacaata atagaaattt      4560
     ataatacaaa caaacataaa ttcgtggaca tggacacaga agcgcttata ccaatagcag      4620
     tttcattata caatgcaact gtccactcag ctactgggta tacgccgaac gaaatattgt      4680
     tcaatcaaac aaatgaaatg aggcccataa ctatacacga acaagcggaa aaaatatttg      4740
     cgaatgcgaa aactaatatt gaacgatcta ggcaaaacca aatgaaagga aatattagaa      4800
     aagaaactcc acctttgatt cgagaaggtc aagaagttta tgtaaaacct aacataagaa      4860
     aaaaattaga ccctagagca agaaatacaa cagtaaacaa tgtaacagat agaacttttg      4920
     agaattcgag acacataaag cgacataaaa ataagattca tcgtattagg tcatagtaat      4980
     acgtccgggg acgtccgtct tttccccccg tgacg                                 5015
//
ID   GYPSY42-LTR_AG repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY42-LTR_AG is an LTR of retrotransposon GYPSY42_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY42_AG; GYPSY lineage; GYPSY42-I_AG; GYPSY42-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-251
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY42_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 77-77 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY42-LTR is a long terminal repeat of GYPSY42_AG (its internal
CC   portion is deposited as GYPSY42-I_AG).
XX
SQ   Sequence 251 BP; 66 A; 33 C; 55 G; 97 T; 0 other;
     aattatgtgg tataaccatt attaaccttg gtactggtat aacggtgata cgcgtggctg        60
     tagtggcagc tttgtgacgg tgacattcga tcgagagacg atctgataac tctctttttc       120
     cgttatctcc cgagcagtac agacgtctag gacgagatag gttttttttc ttattttttt       180
     atagttagga gttaggattt aggttatgtt agaataagtt agtttatttt tttgtaaata       240
     aaaacttaat t                                                            251
//
ID   GYPSY43-I_AG repbase;    DNA;    INV; 5274 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY43-I_AG is an internal portion of retrotransposon GYPSY43_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY43-I_AG; GYPSY43-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY43_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5274
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY43_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 78-78 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY43_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY44_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY43-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 402-aa GYPSY43_AG1p gag-like
CC   polyprotein (pos. 425-1630) and the 1150?aa GYPSY43_AG2p
CC   pol-like polyprotein (pos. 1585-5034).
CC   The sequence of the LTRs flanking GYPSY43-I_AG is deposited as
CC   GYPSY43-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1585..5034
FT                 /product="GYPSY43_AG2p"
FT                 /translation="YFGKFLGSCRNNFTDLDFLPYITGTHPKTSQRFKLLL
FT                 DSGANKNILKPGIIQSLQPVNTVIKNASGCHNVSQKGSINLLGPELPNQMY
FT                 YEYDFHKFFDGIIGSQYLARCNSIINYSNETVTIAGKIIPFVKYFPTNKFF
FT                 HHIVSIDTLENGDWFVPCHQLLCNNLIIEPGLYKSENNKSIVNIISQSHIA
FT                 PTITTSFHLNVNNFETINPIPLKVDEPLNKKAVEILIRSDHLTPYEKDNLF
FT                 DVILNNQQVLLKRNEKLSSTTVVKHKIITKDDEPTYSKTYRFPNHFKKDVE
FT                 EQILEMLEDGVIIPSNSPYSSPIWVVPKKPDASQKRKIRVVIDFRKLNEKT
FT                 INDKYPIPQIEEILDSLGKSTYFSTLDLKSGFHQIEMDPAHREKTAFSTSQ
FT                 GHFEFTRMPFGLKNAPATFQRAMNHVLRGYIGSICFVYLDDIIIIGNNLTS
FT                 HLENLDKVLKRLAACNLKIQVNKCEFLKRETEFLGHLITQDGIRPNPDKIK
FT                 KILDWSLPMNQKEIKQFLGLTGYYRKFVKDYARLTRPLSKCLKQGAKVAYD
FT                 EEDYKKAFEELKHIIASDQVLAYPDFELPFILTTDASNFALGAVLSQVQDN
FT                 CERPIAFSSRTLNSTESNYPATEKEALAIIWAVKKFKPYLYGKKFTLITDH
FT                 KPLTFIKTSFKNSKILNWRLELENFDYEVKYKEGKTNVVADALSRRTDPDK
FT                 SIRDINASSISDSPRSGTNRSSETIHSGDISGDYFVHYTTRPVNLYRNQLI
FT                 FKLGDTNAIVKETPFVNFQRTVITQNNFDSSNVSWFLSMYHNGKQTAIFAA
FT                 ENLMQTIQETFSSHNFTKGHFVVTPNMVEDVTSIERQNFLVTSEHDRAHRG
FT                 ICEVEYQLRRSYFFPCMLKMIRSYVNSCEICSSHKYERKPYNIKISPRPIT
FT                 HKPLDRVHMDIYIINKCSFLSIIDSFTKHLQMMYLKNKNIVQVQKKLATYF
FT                 SIIGLPKEIITDHETTFMSVQLKSFLSSLGVLLQYASCSESNGQIEKTHCT
FT                 ITEIINTNKYKYEGADTRSLTKIAVTLYNNSVHTATKFTPNELLFNNSNSV
FT                 NPPEISGKAQILFATAYKNMTKAAKRQTNNNDSKCAPPTLEEREAVFIMPN
FT                 IRTKMQPRATKLIVRNVLDKTFENARGVKRHKQKIKRLKKYN"
FT   CDS           425..1630
FT                 /product="GYPSY43_AG1p"
FT                 /translation="MWRNSTIEAFCSDTDSISNDSGSLSYVPTNVDIPLER
FT                 LSLTDNMEQIQAQLEQLTHLVQTLAVSHEQQSQKILTLESNTQQASSSVAS
FT                 SVAQGANLSVNLDAFYKIPDPIKAVPVYDGNKKQLFAWLKTAENALNIFKG
FT                 NVHYAVYQMYEDAISNKIQGRAKDALCLEGNPTDFQDIKGILTKTFSDRYD
FT                 LSTHMCQLWHNKMNNSTNLKGYYMQTKELIQKIKQIARQNEKYNESWSAIN
FT                 HFIDETSLAAFIAGLHEPYFGYVQAARPEDLEGAYAFLCKLKSNESTAQNS
FT                 NVRKVTETKHYTSHNEGLQKRFDCNANRPRMTNQASTSSFMNRNTRNVHSS
FT                 NRDSPVPMETESSRTRLTLNQKNLNTTETFNSNCPRNFENEEDDILVNFWE
FT                 AVETTLPI"
XX
SQ   Sequence 5274 BP; 1907 A; 963 C; 935 G; 1469 T; 0 other;
     ggcgcagccg gtagtcgttg attagaaaaa aaaaacagtg ctagtgagcc gtaatacgct        60
     tacgtagttt gtccggattt gtagctacta caagataggg ttacgtattc atctccgtgc       120
     aattttaaaa gtgcggacga tttgtggcaa cgccgttttc tgttcatcga caggaccatc       180
     ctcttctccc tttttcatca ccaaacgtcg gattgaggtt aggatcctca cgtgttcttc       240
     aacaccaaca cacaggtaag caaacttttg gtttttaatt tctcttgttt gtctgagtga       300
     cagagataga aaaacttttg ctactgtgtt tcggatagtc actataaaat agaactattc       360
     gatttcttaa atttgaaaaa ttaaaaacgt gttcttagag agacgtttat aaccgaagca       420
     ttttatgtgg agaaattcaa ccattgaggc tttctgttcg gatacagatt caatatcgaa       480
     cgattccggc agcctctcat acgtgcccac caacgttgat attcctctcg agcgcttatc       540
     tttaaccgat aacatggaac aaatacaggc gcaacttgag cagcttacgc atctcgtaca       600
     gactctcgct gtctctcacg agcaacagtc tcaaaaaata ctcacacttg agagtaatac       660
     tcagcaggct agtagtagtg tagcgagtag cgtagcgcag ggcgctaacc ttagcgttaa       720
     tttggatgcc ttttataaaa tccctgaccc gataaaggca gtccctgtgt acgatggaaa       780
     caaaaaacag ctttttgcat ggcttaaaac agcagagaac gcactgaaca tttttaaggg       840
     aaacgtgcat tatgccgttt accaaatgta tgaggatgct ataagcaaca aaatacaggg       900
     gcgtgcaaaa gatgcattgt gcttagaagg taaccctact gattttcaag atatcaaagg       960
     gattttgaca aaaactttca gcgatagata tgatctatca acgcacatgt gccaattatg      1020
     gcataataaa atgaacaata gtaccaattt aaaaggctat tacatgcaga caaaagaatt      1080
     aatacaaaaa attaagcaaa tagcaaggca aaacgaaaaa tataatgaga gctggtcagc      1140
     tataaaccac ttcattgacg aaacaagcct agctgcattt attgcagggt tacatgaacc      1200
     atattttggt tatgtacaag cagcacgacc tgaggatttg gaaggggcat atgcgttttt      1260
     atgcaagctg aaatccaacg agtccacagc acaaaattca aatgttagaa aagtgaccga      1320
     aacaaagcat tacacttcac acaatgaagg tttgcagaag cgatttgatt gcaacgcaaa      1380
     tagaccaagg atgacaaatc aagcttcgac atcgagtttc atgaaccgta acacgagaaa      1440
     cgtgcactct tctaataggg attctccagt tccaatggaa actgagtcta gtagaacaag      1500
     attaaccttg aatcaaaaaa atttgaatac aaccgaaaca ttcaattcaa attgtccacg      1560
     aaattttgaa aatgaggagg atgatatttt ggtaaatttt tgggaagctg tagaaacaac      1620
     tttaccgatt tagattttct tccatacata acagggacac atcctaaaac ttctcaacgg      1680
     tttaaattac ttttggatag cggtgcaaat aagaatattt tgaaaccggg aataattcag      1740
     tcattacaac ctgttaatac cgtaataaaa aatgcatcag gttgccataa tgtttcacaa      1800
     aaagggtcaa taaatttgct tggaccagaa ttgccaaatc aaatgtacta tgaatatgat      1860
     ttccataaat tttttgatgg aattattgga tcgcaatatt tagctagatg caattctata      1920
     attaactata gcaacgaaac agttactatc gctggtaaaa ttattccatt tgttaaatat      1980
     tttccaacca acaaattttt ccatcacata gtttcaatcg acactttaga aaatggtgat      2040
     tggtttgttc catgtcatca attactctgt aataatctta taatagaacc tgggctctac      2100
     aaatcagaaa ataataagtc catcgtaaat attataagcc aatcccatat tgcaccaaca      2160
     attacaacca gttttcatct aaatgtaaat aattttgaaa caattaaccc cattccatta      2220
     aaggtcgatg agccactcaa taaaaaagca gtagaaattt tgataaggtc ggaccatttg      2280
     acaccttatg aaaaagataa tctttttgat gtaatattga ataaccaaca agtactcctt      2340
     aagagaaatg aaaaactttc ttcaacaacc gtagttaaac ataaaattat aactaaagac      2400
     gatgagccaa cgtacagcaa aacttataga tttccaaatc attttaaaaa agacgtagaa      2460
     gagcaaatct tagaaatgct cgaagatgga gtaattattc cctcgaatag tccatattcg      2520
     tctcccattt gggtagttcc caaaaaaccg gatgcttcac aaaaaaggaa aataagagtc      2580
     gtaatagatt ttcgcaaact gaatgaaaaa actattaatg ataaataccc tattccccag      2640
     atagaggaaa tcttggacag tttgggaaaa tctacatact tctcgacatt agatctgaaa      2700
     tctggcttcc accagataga aatggaccct gcacatcgcg aaaaaacggc cttctcgaca      2760
     tctcagggac acttcgagtt cacgaggatg ccgttcgggt taaaaaatgc cccagcgacg      2820
     tttcaacgtg caatgaacca tgtactaaga ggatacatag gatcgatttg ttttgtctac      2880
     ttagacgata ttattataat tggtaataat ttaacatcac atttagaaaa cctggataaa      2940
     gtgttgaaaa gattagcagc ttgtaattta aaaattcaag taaacaaatg tgaatttctg      3000
     aaaagagaaa cagagttcct aggtcattta ataactcaag atggaataag acctaatccc      3060
     gataaaatta aaaaaatcct cgattggagt ctacctatga atcaaaagga aatcaaacaa      3120
     ttcctagggc ttactggtta ttaccgtaag tttgtgaaag actatgctag attaacaaga      3180
     cccctttcaa aatgtttaaa gcaaggtgct aaagtagcgt atgacgagga agattataaa      3240
     aaggcatttg aagagctaaa acatattatt gcttctgatc aagtccttgc ttatccggac      3300
     tttgaactgc ccttcattct cactacagac gcaagcaact ttgcattggg agcggttttg      3360
     tctcaagttc aagataattg cgaacggcct atagcatttt ctagtagaac actgaatagt      3420
     acagaatcca actatccagc aacagagaaa gaggccctag ctataatttg ggcggttaaa      3480
     aagtttaagc cctaccttta cgggaaaaag tttacgttaa tcacggacca taaacctctt      3540
     acgtttataa aaacatcttt caaaaattcg aaaatactga attggcgttt agagctagaa      3600
     aacttcgact atgaagttaa atacaaagaa ggaaaaacta atgtggtagc agatgcgttg      3660
     agcaggagga ctgaccctga caaatctata cgagatatta atgcttcctc catttcagac      3720
     tcgccaagaa gtggaacaaa ccgaagtagc gaaacgattc attctgggga tatatccggc      3780
     gattactttg ttcactacac aacaagacct gtaaatttgt atcgcaatca gcttatattc      3840
     aaattaggag acacaaatgc gattgttaaa gaaacaccat ttgtaaattt tcaaagaact      3900
     gttatcactc agaacaattt cgattcaagt aatgtcagtt ggtttttaag catgtaccac      3960
     aacggaaagc agaccgctat ttttgctgca gaaaatctta tgcaaacgat tcaggaaaca      4020
     tttagtagcc ataatttcac aaaaggtcat tttgtagtta caccaaatat ggtagaagat      4080
     gtaacaagca ttgagagaca aaattttctc gttacatcgg agcatgacag agcccataga      4140
     ggtatatgtg aagtagaata tcagttacgg cgatcatatt tctttccctg catgctaaaa      4200
     atgattagaa gttatgttaa cagctgtgaa atttgtagta gtcataagta cgaacgcaag      4260
     ccttacaata taaaaatttc acccagaccg attacccata aaccattaga tcgcgttcat      4320
     atggatattt atatcattaa taagtgtagt ttcttatcaa taattgattc atttacaaaa      4380
     catctacaaa tgatgtacct taaaaacaag aacatagtac aagttcaaaa gaagttagct      4440
     acttattttt caatcatagg attgcctaaa gaaatcataa cagaccatga gaccacgttt      4500
     atgtctgtcc aactaaaaag ttttttgtcg tcgttaggag tcttgttaca atatgcatct      4560
     tgttcagaat cgaatgggca aattgaaaaa acacactgca caataacaga aatcattaat      4620
     acaaataagt ataagtatga aggagcagat acaagatctt taacaaagat tgctgttacc      4680
     ctttacaaca atagcgtgca tacggcaacg aaatttacac ccaacgaatt gttgtttaac      4740
     aattctaata gtgtgaatcc accagaaata tctggaaaag cacaaatatt atttgctacg      4800
     gcatataaga atatgacaaa agctgccaag cgccaaacca ataataatga ttcaaaatgt      4860
     gctcctccaa cattggagga aagggaagca gtgttcatca tgcctaatat aagaacaaag      4920
     atgcaaccaa gagcaacaaa actcattgta agaaacgtac tggacaaaac atttgaaaat      4980
     gctagaggag ttaaaagaca taagcaaaaa atcaagaggt tgaagaagta caattagcga      5040
     attcttttga acaaaatttg aatattgata aacataccat acttttctag tgaacgtaat      5100
     ttaaaggtac ttaatcactt gaaactaata aaaagcgaat gaaattctgt tgtaaggctg      5160
     cgtaaggtta ggtaatacta agttgacttt attataacgt ttttatactg tcctattatc      5220
     tttgtactgc ctatcctaat cggacgagga cgcccgagct ttaccccccg gaga            5274
//
ID   GYPSY43-LTR_AG repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY43-LTR_AG is an LTR of retrotransposon GYPSY43_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY43_AG; GYPSY lineage; GYPSY43-I_AG; GYPSY43-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-196
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY43_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 79-79 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY43-LTR is a long terminal repeat of GYPSY43_AG (its internal
CC   portion is deposited as GYPSY43-I_AG).
XX
SQ   Sequence 196 BP; 70 A; 39 C; 28 G; 59 T; 0 other;
     agtaatagat agtgtgttta ttattatatg tttacatata aaacgttcaa tcacacctca        60
     ccatcatata aaaaccttat tcaactgacg tgttgcgctg tcagtttgat gataaacgca       120
     ggctcctcaa taaagtcatt attattccga tcgttaaaga gaaaggacac aaacacaaca       180
     cccacgactt gtaatt                                                       196
//
ID   GYPSY44-I_AG repbase;    DNA;    INV; 5554 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY44-I_AG is an internal portion of retrotransposon GYPSY44_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY44-I_AG; GYPSY44-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY44_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5554
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY44_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 80-80 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY44_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG,
CC   GYPSY45_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY44-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 433-aa GYPSY44_AG1p gag-like
CC   polyprotein (pos. 385-1683) and the 1051?aa GYPSY44_AG2p
CC   pol-like polyprotein (pos. 1638-4790).
CC   The sequence of the LTRs flanking GYPSY44-I_AG is deposited as
CC   GYPSY44-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..1683
FT                 /product="GYPSY44_AG1p"
FT                 /translation="MFNGSQSFVQPAPNILELGKVPDFVRDLRNFDGQPNE
FT                 LNNWIDDVESIMNLCERCRVGETSLMYELIQKTIRRKICGQAADVLNSNNI
FT                 TSKWSEIKETLLLYYCDKRDLKTLDFELTTVKRGKSEPLNSYYGRVNELLA
FT                 SLVTQVQTQDSYKNNASVHIDFFREKALDAFIRGLDKPLSILLKTASPTSL
FT                 AKAYQFCLEYENMDCRSYISGNRMNNTSIPIPKPKELSVPFLPVTTPRGNF
FT                 QVQKPPVPLPRRQPFNNHYNPNQIGNTNTNRSHQMRRDLPVPMEVDESIRS
FT                 RYTSANPIAYNNHSTHTYSNAIHNPNTSNNFVQYSDSNSTNEFYQPTNTIP
FT                 HQYVPNPTQHTNAHYNQFTNTYPNTLYNQYTNSSLSPSPSNFNQQIHPLER
FT                 EARITHTNEMTYLPNYQAPGKDINTQEQPNHFLGMNNVW"
FT   CDS           1638..4790
FT                 /product="GYPSY44_AG2p"
FT                 /translation="YTRATEPFFRNEQCMVEPVLPYIVIKNRKGEFPFLID
FT                 TGANVSFINPEIAESCETAKPFEIPLKNIASASGKFQLKSAIDLNFFYPKI
FT                 NCICRFMLHSFHHFFVGIIGTDILYNLNASIDLEKRVLKLHNFSQTLQIPL
FT                 NFYTSSSQSSNSSFRLNHLNNFEQTKLKKVLDSNMSVFYEPKLKLTCTTRV
FT                 ECCINTTDDIPIHQKVYPYPAAYTEEVNKQITELLDNGIIRPSHSAWTAPV
FT                 WVVPKKSDASGEKKFRMVIDYRKLNQKTIADRYPMPEINYVIDQLKGHTLF
FT                 TTLDLASGFYQIKMRPSDIEKTAFAINNGKYEFVRMPFGLKNGPSIFQRVI
FT                 DDVLREEIGKTCYVYMDDVIIFGKNLTDHLINLDKILKLLNEANLKVQLDK
FT                 SEFLHSEIEFLGYVIGCNGIKPNIKKIEVISNYPIPKTLKELRGFLGMMGY
FT                 YRRFVKDFAKIAKPLTNLLRGEESPSSNKKIELEKNEIECFHKMKKILSSE
FT                 DILIYPDYKKPFVLATDASDFAIGAVLSQDEDGKDLPIHFASRTLSKAEEK
FT                 YSVPEKEMLAIFWALKTFRNYLYGATFKIITDHQPLTFALSSKNSNAKLKR
FT                 WKSYLEEHDYELIYRPGKNNVVADALSRIAFSMTGTQHSADTSDDFFIIAT
FT                 EAPINVFKQQIILKMGPDNIETKILFNSYKRITISISNINEASILKILQEN
FT                 FDHSKINGLFTTEAIMGQIQEVYRTHFGNQRLLKIRFSQKILEDIEDEEEQ
FT                 YNLIKKEHFRAHRCAEENKSQILRRFYFPQIRKKIIEFIKECEICHINKYD
FT                 RKPVSYPLQKTPIPHKPFEITHIDIFFIENHHFITYIDKFSKFAQIKLTPT
FT                 RAAIDVVPIIKELITKYHPPKILVLDGEKTFSSRELKTFFQSLEISTYVTP
FT                 VGHSEINGIIERFHSTILEIYRISKMENPTLSPPDIIQISVQKYNNTIHSS
FT                 TKYTPQEIILPSIDSSKIIETVYQNLIQKQSQDLKYHNKSRKVIQIAENKP
FT                 IYEKTKARLKHKPRFKKKTVVKVNNSTVNLEENRKIHKNDLKIVR"
XX
SQ   Sequence 5554 BP; 2044 A; 997 C; 897 G; 1616 T; 0 other;
     ggcgcccgaa tcaggagagc cctagacggg aagagataag ctcagagcag aaaaaaaaat        60
     cttcacaaat ctcagagagc aatactctct gaaacagtgg tccaaagagc cactactgca       120
     aaagagcgaa gcgaagcttg ggacactgtg gttatcaccc gatcgctgta cgagacccct       180
     agtaaccgga ccggtaaaaa ggattcccct ccaccagctg cctaaccttc ccccgaacgg       240
     agtatcacca acgagttaca acggagcatc accgacggag cacgacgaaa atcagcgttg       300
     gtaagcaata atagtgtctg tgtgagtatt attttgtaag tattcatagt gtgtggtgca       360
     aagtgacagt gtcgaagtga aaaaatgttc aacggcagcc agagttttgt tcaaccggct       420
     ccaaatattc tggagctcgg taaggtgccc gattttgtga gagatcttcg caatttcgat       480
     ggacaaccaa acgagttgaa taactggata gatgatgtag aaagcatcat gaatctttgc       540
     gaacggtgtc gagtaggaga aacttcttta atgtatgagt tgatccaaaa aacaatccga       600
     cgtaaaattt gcggccaagc tgccgacgtc ttaaattcta acaatattac ttctaaatgg       660
     tcagagatta aagaaacgtt gttattatat tattgcgata aacgagactt aaaaacatta       720
     gattttgagc tgacaaccgt taaaagagga aaaagtgaac cattaaattc atactatggc       780
     agggttaacg aactattagc atctttggta acacaagtgc agacacaaga tagttataaa       840
     aataacgcaa gtgttcatat tgattttttt agagaaaaag cattggatgc tttcattcga       900
     ggcttggaca agcctttgtc aattttgctt aaaactgcta gccctacgtc attagcaaaa       960
     gcttatcagt tttgcttaga gtatgaaaat atggattgta gatcatacat tagtggtaat      1020
     agaatgaaca atacttctat tccgattccc aaaccaaaag agctatcggt accatttttg      1080
     ccggttacca ctccacgtgg taattttcaa gttcaaaaac ccccggtacc gttacctcgc      1140
     cggcaaccat ttaacaatca ctataatcca aaccagatcg gtaacacaaa tactaacaga      1200
     agccatcaaa tgcgacgaga tctacccgta cccatggagg tagatgaaag tattagaagc      1260
     cgatatactt cagctaaccc tattgcatac aataatcatt ccacacatac ttattcaaat      1320
     gcaatacata acccaaatac aagcaataat tttgtacaat acagcgattc gaattctact      1380
     aacgaattct accaaccaac taacacgatc ccacaccagt acgtccctaa tcctacacag      1440
     cacactaatg ctcattataa ccagtttact aacacatatc cgaatacatt atataatcaa      1500
     tacactaata gctcattatc accatcacca tcaaatttta atcagcaaat tcatccgtta      1560
     gaaagagaag ctcgcatcac tcataccaac gagatgacat atttacctaa ttaccaagca      1620
     cctggtaaag atattaatac acaagagcaa ccgaaccatt ttttaggaat gaacaatgta      1680
     tggtagaacc tgttctccca tacattgtta ttaaaaatag aaaaggagaa tttccattcc      1740
     ttatcgatac aggtgcaaac gttagtttta ttaatcctga aattgcagaa tcttgcgaaa      1800
     cagctaaacc atttgaaata cctttaaaaa atatagccag tgctagtggt aaatttcaat      1860
     tgaaatcagc tatcgattta aattttttct atcctaaaat taattgcatt tgtagattta      1920
     tgttacattc ttttcatcat ttttttgtag ggataattgg aacagatatt ttgtataact      1980
     taaatgcaag tatcgattta gaaaaacggg tacttaaatt acataatttt tctcaaacat      2040
     tacaaatacc attaaatttt tatacctctt catcacagtc atccaattct tcatttagat      2100
     taaatcacct aaataatttt gaacaaacta aacttaaaaa agtgttagat tcaaatatgt      2160
     ctgttttcta tgagcccaaa ttaaaactta catgcactac tagagttgag tgttgtataa      2220
     ataccactga cgatatacca atacaccaaa aggtatatcc ttatccagca gcgtataccg      2280
     aagaggtcaa taaacagata acagaattgc tggataatgg tattatcaga ccttcgcact      2340
     ctgcctggac ggcacctgta tgggtcgttc caaaaaaatc agacgcctct ggagaaaaaa      2400
     aatttcgcat ggtgatcgac tatcgcaagc taaatcaaaa aacaatagct gatcgatatc      2460
     ccatgcctga aatcaattat gttattgatc aactgaaagg acacactctt tttacgacgc      2520
     tagatttagc ctctggcttt tatcaaataa aaatgagacc gagtgatata gaaaaaacgg      2580
     catttgctat caacaacggc aaatatgaat ttgttagaat gccatttggg cttaaaaacg      2640
     gtccttccat atttcaaagg gtaattgatg acgtccttcg agaagaaatt ggtaaaactt      2700
     gttatgttta tatggatgac gttattatct ttggaaaaaa cttaactgat catttaatta      2760
     atttagataa aattttgaaa ctattaaatg aagcaaactt aaaagttcaa ctcgacaaat      2820
     cagagttttt gcactctgaa attgaatttt taggctacgt aattggatgt aatggtataa      2880
     aaccaaacat taaaaaaata gaagtaataa gcaattaccc tattccaaaa accttaaaag      2940
     aactaagagg atttttgggg atgatgggtt attacaggcg atttgtaaaa gattttgcaa      3000
     aaattgcaaa acctcttaca aacctcttaa ggggagagga gagtccatca tccaacaaaa      3060
     aaatagaatt ggaaaaaaat gaaatagaat gtttccataa gatgaaaaaa atactttcat      3120
     cagaggatat acttatttat cctgattata aaaaaccttt tgttttggcc acagacgcat      3180
     ccgactttgc tattggcgct gtgttatcac aggatgaaga tggaaaagat ctaccaattc      3240
     attttgcctc acgtacctta tcaaaggcag aagaaaaata ctctgtacca gaaaaagaaa      3300
     tgttggcgat tttctgggca cttaaaactt tcagaaacta tttgtatgga gccaccttta      3360
     aaatcattac cgatcaccaa cctttaactt ttgcactgtc atcgaaaaat tctaatgcaa      3420
     agctaaaacg atggaaaagt tatttggaag agcacgacta tgaactaatt tataggcccg      3480
     gtaaaaataa tgtagttgcg gacgctctaa gtagaattgc attttcgatg acaggtacgc      3540
     aacactcagc agatacttct gacgattttt ttattattgc tacagaagct ccaattaacg      3600
     tatttaaaca acaaattatt ttaaaaatgg gccctgataa tattgaaact aaaattttgt      3660
     ttaatagtta taaaagaatt actatttcca tcagtaatat taacgaagct tctattctta      3720
     aaattttgca agaaaacttc gatcactcca aaataaatgg cctatttact actgaagcta      3780
     ttatgggtca aattcaagaa gtctatagga cccattttgg gaatcaaaga cttttaaaaa      3840
     ttcgtttttc tcaaaaaata ttagaagata tagaagatga ggaggagcag tacaatttaa      3900
     taaaaaaaga gcattttaga gctcatagat gtgccgaaga aaataaaagc cagattcttc      3960
     gaagattcta ttttcctcaa ataagaaaaa aaattattga atttataaaa gaatgtgaaa      4020
     tttgtcacat aaataaatac gatagaaagc ctgtatctta ccctttacaa aaaactccta      4080
     ttcctcataa accatttgaa attacacata tagatatctt ctttatagaa aatcatcatt      4140
     tcataactta catagataag ttttctaagt ttgctcaaat taaattgact ccaacacggg      4200
     ctgctataga tgtagttcct attattaaag aattgattac aaaataccat cctccaaaaa      4260
     tactagtctt agacggtgaa aagaccttca gcagtcgtga attgaaaact tttttccaat      4320
     ctcttgaaat ttctacctac gtcacacctg ttggtcacag tgaaatcaac ggtattatag      4380
     aacggtttca ttcaaccatt ttagagattt atcgaatctc aaagatggaa aacccgacgt      4440
     tatcaccacc tgatatcata cagatatcag ttcaaaaata caataatacc attcactcct      4500
     ccacaaaata cacacctcaa gagattatct taccttccat agactcatct aaaataatag      4560
     aaacagttta tcaaaatctt attcaaaaac aatcacagga cttaaagtat cacaataaat      4620
     cacgaaaggt gatacaaata gcagaaaaca aacctattta tgaaaaaact aaagcgagat      4680
     taaagcacaa acccagattt aaaaagaaaa cagttgttaa ggtaaataat agtacagtaa      4740
     accttgaaga aaatagaaaa attcacaaaa atgatttgaa aattgtgaga tagtttagag      4800
     ttgagttgat caatgaaatg atgcatgtga aatcttattt ttgtctcttt tgaagaaaag      4860
     agttctgaaa ttagcaattt tgaaatttaa ataattatgc accattgttc atatacattt      4920
     tcatgtattg cacaggctac tagcagttag atagaatatc taactaataa ttagtaatgt      4980
     ggaagaattt gttataaaaa aaagaaatta aataactcaa accagctgaa tatgtgaaac      5040
     agaaatttaa aactatctta cagtttcacg ttaaactccc atgctctcgt cccatataag      5100
     gctttatatt ttgagtgagc attgctgaca tataacactt gtgaattcag atttgagtga      5160
     gaattgaaaa ttatgaaaaa ggccactatc gttcgaacac aaaatatccg tgaaactgta      5220
     atgtttctat ggtggataat acaatatggt tataatgcca atcacctgaa aattttgcaa      5280
     cgtatgtaca aaaagcatta tttcgtgctt gatatcggat gcaggtagaa catctaagaa      5340
     agattgcaaa aaagggatgg taaaccataa gaacccaact ccaaacagga gtttttcatc      5400
     gagattatgg acgaacaccc tggcatttca tacatcggct ctatgcataa aatgtttctc      5460
     ccatctctgt ttttgtttgg ttatatgcct gtaatgttat agtttcatca tatgattcct      5520
     tacgatgtgg gcatcgttct tttaagctgg gagg                                  5554
//
ID   GYPSY44-LTR_AG repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY44-LTR_AG is an LTR of retrotransposon GYPSY44_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY44_AG; GYPSY lineage; GYPSY44-I_AG; GYPSY44-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-164
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY44_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 81-81 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY44-LTR is a long terminal repeat of GYPSY44_AG (its internal
CC   portion is deposited as GYPSY44-I_AG).
XX
SQ   Sequence 164 BP; 60 A; 28 C; 26 G; 50 T; 0 other;
     agttaacacc aatactattt agcaatacta ttttgcttat atgcatgcac ataggattga        60
     taggttaaat ctaagcgagc gtttcgaata aagattaatc tgtaagtaga atccaacgag       120
     aacagacgtt cttatttgtg aatccgaaac acatacactt aact                        164
//
ID   GYPSY45-I_AG repbase;    DNA;    INV; 5607 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY45-I_AG is an internal portion of retrotransposon GYPSY45_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY45-I_AG; GYPSY45-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY45_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5607
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY45_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 82-82 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY45_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG,
CC   GYPSY44_AG,
CC   GYPSY46_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY45-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 351-aa GYPSY45_AG1p gag-like
CC   polyprotein (pos. 278-1330) and the 1054?aa GYPSY45_AG2p
CC   pol-like polyprotein (pos. 1273-4434).
CC   The sequence of the LTRs flanking GYPSY45-I_AG is deposited as
CC   GYPSY45-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1273..4434
FT                 /product="GYPSY45_AG2p"
FT                 /translation="SQFGRLFISEPFFRVGSQMVKPILPFVKLKTNIGEFP
FT                 FLIDTGANVSLIDPKLANSCKIGKPYDLCDRNIASASGKFITSSAIDINFF
FT                 SPKIDQICTFLLHSFHSFFFGIIGTDILKCLHAVIDLETDNLILKKNSQVL
FT                 HIPLFSYSSSKTTLNPIFRLEHLNCNEQAKLKKILDANNSVFHEPKLQLTC
FT                 STRVECAINTNDDIPIHQKVYPYPAAYTQEVNNQIKTLLDNGIIRPSHSAW
FT                 TAPVWIVPKKIDASGEKKFRMVVDYRKLNQKTIADRYPMPEINYVIDQLKG
FT                 HQYFTTLDLASGFYQIRMRPCDIEKTAFSINNGKYEFLRMPFGLKNGPAIF
FT                 QRVIDDVLRSEIGKTCYVYMDDVIVFGKSFEEHLNNLNNILQLLSNANLKV
FT                 QIDKSEFLHDKIEFLGYIITSEGIKPNYKKIEAISRYPEPSNIKELRGFLG
FT                 MMGYYRRFIKDFARIAKPLTNLLRGDENKASKKKIDLSIAEKACFQKLKSI
FT                 ISSEDILIYPDYSKPFLLTTDASDIAIGAVLSQGQIGKDRPIHFASRSLSK
FT                 TEEKYSVPEKEMLAIFWALKIFRNYLYGTKFTVLTDHQPLTFALSAKNTNA
FT                 KLKRWKSYLEEHDFEIAYKPGNTNVVADALSRNVCSLTGTQHSAETSDDFF
FT                 IISTETPLNAFKHQVIIKNGCDNVQRRQIFSSHNRITISLNDTNEISLLQV
FT                 LKKYFDPSKINGLFTSEAIMGKIQEVYRKYFGNTNLLKIRYTQKLVRDIED
FT                 EEEQWQIAKTEHVRAHRCAEENTQQILRNFYFPKIRAKSKQIAKECQTCHE
FT                 NKYNRKPIDYPIQKTPIPSNPFEIAHIDILFLENNYFLTYIDKFSKFAQIK
FT                 LIESRATIDILPAVKELTTKFFPPKTLVMDGEKSFCSRELELFYKAYNIET
FT                 YVTATGRSEMNGIIERFHSTLLEIYRITKKENPTFCTPDLVELSVQKYNSS
FT                 IHSVTKHTPIEVILPSVRSSEIINNVHKNLIQKQSQDLIFHNKNKKSVPID
FT                 INNDTYEKTRARLKHKPRYKKKNIMNINNSTVLLEGNRKVHKNDLKIR"
FT   CDS           278..1330
FT                 /product="GYPSY45_AG1p"
FT                 /translation="MTTETNVPNIYELGKVPDFVKDLREFDGRHTELMNWI
FT                 ADVEEILTLCVSCKISQLLGTLVQRTIRRKIVGEAAEVLNTNNISTDWKEI
FT                 KEVLLLHYGDKRDLFTLDFELSTMRKSNGESLTAYYGRVKETLALIIAHVQ
FT                 TNEKYREHAPIHTQFFNEKALHSFIRGLDKPLSFILKTSAPANLSKAYQLC
FT                 QEYYSTDLRFARMFEPRGQADFNQKPVPKPRGSFNPMPYPRASTSFVPSTA
FT                 SHSVPNTTHTIKSNRYQTPTPMEVDGSIRYDNGSHSRRFTQQTYPRVPSTQ
FT                 VKDFKRQANTVHDDTDRKINNTGLESDYQHQQSEYEAGHDHNLDGSLYQNH
FT                 FLEWDPKW"
XX
SQ   Sequence 5607 BP; 2096 A; 935 C; 954 G; 1622 T; 0 other;
     ggcgcccgaa taggttgtat gtgtgtgagg gaagagtata agtgcatata aagtataaaa        60
     aaatcctaca cgtgaagcta aacacttcca tcgagtggtt gaaggagcca ctaattattt       120
     gcaccaagcg agaactggga cactgtggat ttcgcccgat tgattgctga ggcccctagt       180
     acccgaacgg aaaaaaggat catcctctgc aagctgccca gctttccccc gaagacatca       240
     tactgtgaca attttttttg gtaagtagga agtaaaaatg actacggaga caaatgtgcc       300
     gaacatttat gagcttggaa aagttcccga ttttgtaaaa gatcttcgag aattcgatgg       360
     tcgacataca gagctaatga actggatagc agatgtggaa gaaattttaa ctctgtgtgt       420
     gagttgcaaa atatcgcagc tgctaggtac tttagttcaa agaacaataa gaagaaaaat       480
     tgttggtgag gcagctgaag tattaaatac gaataatatt tccacagatt ggaaagaaat       540
     taaagaagta cttctcttac attacggtga taaaagagat ttgttcacgt tagatttcga       600
     attatctacc atgcggaaaa gtaacggtga aagtttaacc gcatactatg ggagagtaaa       660
     agagacgtta gcacttataa ttgcacatgt acaaactaat gaaaagtatc gagaacatgc       720
     accaatacat acgcaatttt tcaacgaaaa agcactgcat tcgtttatac ggggattaga       780
     taagccattg tctttcatcc taaaaacatc tgctccagca aatttaagca aagcttatca       840
     gttgtgtcag gaatattaca gcacagattt acgtttcgct agaatgtttg aaccacgcgg       900
     ccaagccgat ttcaaccaaa aaccggttcc gaagcctcgt ggtagtttca atccaatgcc       960
     ctatccaaga gctagcacaa gcttcgtgcc atccacagca tcccacagcg taccgaatac      1020
     aacacacacg ataaaaagta atcgttatca gacaccaaca ccgatggaag tggatggtag      1080
     tatcagatac gataacggtt cacactctag acgcttcaca caacaaacat atcccagagt      1140
     accatctaca caagtgaagg attttaagcg tcaggcgaat actgtacatg acgacacgga      1200
     cagaaaaata aataatacag gcttagaaag tgattaccaa caccaacaaa gtgaatacga      1260
     agcgggtcat gatcacaatt tggacggctc tttatatcag aaccattttt tagagtggga      1320
     tcccaaatgg taaaacctat tttaccattt gttaaattaa aaactaatat tggagaattt      1380
     cctttcctaa ttgatacagg agccaatgta agccttatag atccaaaatt ggcgaattct      1440
     tgtaaaatag gaaaaccata tgatttatgt gacagaaata ttgcaagtgc tagtgggaaa      1500
     tttattacat catcagcgat agatattaac ttttttagtc cgaaaattga tcaaatttgc      1560
     acatttcttt tgcattcttt tcattctttc ttttttggaa taattggtac agatattctt      1620
     aaatgtttac atgctgtaat agatttagaa acagacaatt taatactaaa aaaaaattct      1680
     caggtcttac atattccact tttttcttac tcatcttcta aaactacatt aaatccaata      1740
     tttagattag aacatttaaa ttgtaacgaa caagcaaagc ttaaaaagat actggatgca      1800
     aacaattcag tattccacga gccgaaacta caactaacat gctcaacaag agtagaatgt      1860
     gctatcaata ctaacgatga tataccaata catcaaaaag tatatccata cccagcggcc      1920
     tatacacaag aggtcaataa tcaaatcaaa acccttttag ataacggtat tataagaccg      1980
     tctcactccg cgtggacagc tcctgtgtgg atagtcccga aaaaaataga tgcatcggga      2040
     gaaaaaaaat ttcgtatggt tgttgactac cgaaagctta accagaaaac aattgccgat      2100
     cgatatccga tgccagaaat aaattacgta attgatcagc ttaaggggca tcaatacttc      2160
     accacattgg acctggcatc aggattttac caaattcgca tgagaccatg tgatattgaa      2220
     aaaactgcat tttctattaa taatggtaag tacgagttct tacgaatgcc ttttgggctg      2280
     aaaaatggcc cagcaatttt tcagagagtg atcgatgatg tacttcgtag tgaaattggc      2340
     aaaacatgct atgtgtatat ggacgatgta attgtatttg gtaaaagttt tgaagaacat      2400
     ttaaacaatt taaacaatat tttacaatta ttaagcaacg ctaatttaaa agtacagatc      2460
     gataaatcag aatttctaca cgataaaatc gaatttttag gttatattat aacttcggaa      2520
     ggcattaaac cgaattataa aaaaatagaa gcaataagca gatacccaga accttccaac      2580
     ataaaagaat tgcgtgggtt tttaggaatg atgggatatt ataggagatt tatcaaagat      2640
     tttgctagaa tagctaaacc gctaacaaat ttattgagag gtgacgaaaa taaggcttca      2700
     aaaaagaaaa tagatttatc tattgctgaa aaagcatgtt ttcaaaaact caaaagcatt      2760
     atatcgtcag aagatattct tatctatccg gattacagta aacctttctt acttacaact      2820
     gacgcttctg acatagcaat aggtgccgta ttatcacaag gtcagattgg caaagataga      2880
     ccaattcatt ttgcctccag atcattgtca aagacagagg aaaaatattc tgttcccgaa      2940
     aaggaaatgt tggcaatatt ttgggctctc aaaatattcc gtaactatct gtatggtact      3000
     aagtttacag ttttgacaga tcaccaacca ttaacatttg ccttatccgc aaaaaatact      3060
     aatgccaaat tgaaacgttg gaaatcgtac ctagaggagc atgatttcga aatcgcttac      3120
     aagccaggaa acactaatgt tgtggcggat gctttgagca gaaatgtatg ttctttgact      3180
     ggtactcaac actcggctga aacatcggat gattttttta taatcagtac agaaacaccg      3240
     ctaaatgctt tcaaacatca ggtgataatt aaaaacggtt gtgataatgt gcaacgaaga      3300
     cagatatttt catcgcataa ccgaataaca atatcattga acgacactaa tgaaatttct      3360
     ttattacagg ttcttaagaa gtacttcgac ccatcaaaaa taaatgggtt atttacatcg      3420
     gaagcgataa tgggaaaaat tcaagaagta tataggaagt attttggtaa tacaaattta      3480
     ttgaaaatta gatacactca aaaattagtt cgagacatag aggacgaaga agaacaatgg      3540
     caaattgcta aaacagagca tgttcgagct catagatgtg cagaagaaaa tacacagcaa      3600
     attcttcgaa atttttattt tcccaaaata agagcaaaat caaaacaaat agcaaaagaa      3660
     tgccaaactt gccatgaaaa taagtacaat cgaaaaccaa ttgactatcc tattcaaaaa      3720
     actccaatac catcaaaccc gtttgaaata gctcatattg atatactgtt tcttgaaaat      3780
     aattattttt taacttacat agataaattc tccaaatttg cccaaattaa attaattgaa      3840
     tcaagagcaa ctatcgacat tttaccagca gttaaggaat taacaacaaa attctttccg      3900
     cccaaaacct tggtgatgga cggagaaaag tctttttgct ctagagaatt ggaattattt      3960
     tataaagcat acaacataga aacatatgta acggctacgg gaagaagtga aatgaatggt      4020
     atcatcgaaa gatttcattc aacgttatta gaaatctata gaataacaaa aaaagaaaat      4080
     ccaacatttt gtacaccaga tcttgtcgaa ctttccgtac aaaaatataa cagttcaatc      4140
     cattcagtaa ccaaacatac tcctattgag gttatcttgc cttcagtaag atcgtctgag      4200
     ataattaata atgtacacaa aaatctgatc cagaaacaat ctcaagacct aatttttcac      4260
     aacaaaaata aaaaatcagt cccaatagac ataaataatg acacttacga aaaaactaga      4320
     gcaagactta aacataaacc aaggtacaaa aagaaaaata ttatgaacat aaacaatagt      4380
     acagttctct tagaaggtaa tagaaaagtt cataaaaatg accttaaaat tagataaaaa      4440
     aattaaaaga actaaaccaa aaaaaatgat ttatcaacgt tatttgtaaa tttaaattga      4500
     attcttaaca taattgattg attaatcaac ttaatttaaa ttgatactca tacttaattg      4560
     ctactacttt tttctctctt ttcattattc tatttcttat atgttaaatt tatgtatgtg      4620
     ttgtctatgt gttttgtcca aaaaaaaaaa aaattttttg tttggcacta tttaataatg      4680
     ttagtatgta tatatatctt tttatatcta catatatatt gtggttagtt aaagattagt      4740
     tttgattctt ttgataggaa gcaaaggatt cataacgaga gccacaagaa cacctgaact      4800
     gttcctcttt tcattctttt ttaagataaa atagataata gaatagagta ggtaaaattt      4860
     aaaataattt aaatatgcca agttttactt aagacaacaa aaatgcattt gttaaacaaa      4920
     gaatagatac aaacatgcta gattatttcc acttatgcta aaaaaaagag gaatgataat      4980
     aataacgtag ataatcaacg gcaaaatatg gcttgtgcaa ttcttctaca tcttaaacaa      5040
     atggatttgt agacagtcta catgtgtaca tgcgtgtgtg tatttatata ttaatgctta      5100
     agtatattta tatatctata cacatcggaa tatgtggaca tgtgggttct acacatgtat      5160
     atttgtgtaa atagtggtat tgcatactga gaatggttat actagaaagt gaggaaaaaa      5220
     tgggctgtac aattttaagt gatgaggagc tacaatctgt tcagatttcg agattcgttg      5280
     tgttctccaa tttgtcgcaa aggaattcaa agatccgtta cgatcttttg atgcgaaaga      5340
     ggccaacgac aaagatctgt caggaaaaag gaactaagtc ttataatcac ttgcgatcgg      5400
     taaaggtcct tgtgaaaagt ccattatgga ttatacgaac atgaacaaca tgaacaacat      5460
     accatccagt gacagaaatg tcaggtgttt cgaatgaaac aaaggataca aaaatatcca      5520
     agcatgaatg ttgttctaat actatgaaat gttccgcaag cagtatcact aaaagacgag      5580
     gacgtctttt cttgttggcc cgggagt                                          5607
//
ID   GYPSY45-LTR_AG repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY45-LTR_AG is an LTR of retrotransposon GYPSY45_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY45_AG; GYPSY lineage; GYPSY45-I_AG; GYPSY45-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-208
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY45_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 83-83 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY45-LTR is a long terminal repeat of GYPSY45_AG (its internal
CC   portion is deposited as GYPSY45-I_AG).
XX
SQ   Sequence 208 BP; 81 A; 38 C; 34 G; 55 T; 0 other;
     agttaaccat cctatgtgta tgtgacacac cactatattt accaatagct atagccaagc        60
     accatattca tataagataa gccgtacact catacataca agataaggtt aggattagag       120
     ttgataggaa tcaaactagg agaaataaag acagttagaa tctggaactc aaagcgttcg       180
     catcatttga tccgaaaata tattaact                                          208
//
ID   GYPSY47-I_AG repbase;    DNA;    INV; 6625 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY47-I_AG is an internal portion of retrotransposon GYPSY47_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY lineage; GYPSY47-I_AG; GYPSY47-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY47_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6625
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY47_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 86-86 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY47_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG,
CC   GYPSY44_AG,
CC   GYPSY45_AG and GYPSY46_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY47-I_AG consensus was reconstructed after multiple
CC   alignment of 6 copies.
CC   The consensus encodes the 429-aa GYPSY47_AG1p gag-like
CC   polyprotein (pos. 640-1926), the 1064?aa GYPSY47_AG2p
CC   pol-like polyprotein (pos. 1866-5057) and the 503-aa GYPSY47_AG3p
CC   env-like polyprotein (pos. 5061-6569).
CC   The sequence of the LTRs flanking GYPSY47-I_AG is deposited as
CC   GYPSY47-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           640..1926
FT                 /product="GYPSY47_AG1p"
FT                 /translation="MSQQEVVDRILSRLAALEAQQQSIPGVIDYSDPPLHF
FT                 TKTDGTAVSPESFDKIPDLVKDLPVFSGEPSELNSWIDDVDGIVKLYQTNS
FT                 TNTVEQQNRFHMVCKFIRRKIRGEANDSLVASNVGINWNLIKKTLITYYGE
FT                 KRDLETLDFQIMSVQQKGRSLEVYYDEVNRLLSLIANQIHTDDRFSHPEAS
FT                 KALIETYNRKAIDSFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNIECR
FT                 KMLTTPKSYIPPSAPRNLIPIVPRIPTKPNMYRPPTTPNHPNSPIYYRPPT
FT                 YLTPQNRPNQNFYNPHLRIRPPVIPQRNPFKPPVAQNPPQPEPMEVDSSIR
FT                 SKQVNYGNRPNFSGTYKPPLKRTRAFNIETNTGNEQVEYEEEMAKTLEECD
FT                 DDVLSAHDRYLACINRQDGSETSENGEEAELNFLE"
FT   CDS           1866..5057
FT                 /product="GYPSY47_AG2p"
FT                 /translation="QTRWIRNIRKWRRSRIEFFRMSSTLPYFLYYGNAKEP
FT                 LRILVDTGSNKNYIHPKYAKISHDLEKPFFISTVAGDVKITKYSQARLLKP
FT                 YSDKMIKFFHLEQLKSFDAILGWDSLKENGSWINTVQDTLIVNGKYTIPLL
FT                 LYKLQEVNQINIRDEHLQTQEKNDLRNMLHDFQDIFQPPDKKLPFTTKVKA
FT                 EIRTIDQSPVYSKTYPYPQALKSEVHSQINKLLNDGIIRTSRSPYNSPVWI
FT                 VPKKLDASNEKKYRLVIDYRKLNSKTISDRYPIPDTASVLANLGSNKYFTT
FT                 LDLASGFHRIPMHERDIEKTAFSINNGKYEFVRMPFGLKNAPSIFQRVMDD
FT                 TLREHIGKICYVYIDDIVVFGKTVEEHLKNLKTVLETLREANFKIQPDKSE
FT                 FLKSEVEFLGFIISAEGLKPNMKKVECIRKYPEPKTLKDLRAFLGLSGYYR
FT                 RFVKNYAELAKPLTKLLRGEDGHRQIPKNQSKNFTITLDESAKKSFQYLKE
FT                 VLCSNDVLAFPDFEKPFILTTDASNIALGAVLSQQTSDGERPITFISRTLS
FT                 RTEENYATNEKEMLAVVWALQTLRNFIYGAKLKIFTDHLPLTFTLSPKNNN
FT                 AKLKRWKSFLEEHDYELCYKPGKANIVADALSRVQINSLTPTQHSAEDDDN
FT                 DYILSTEAPINVFRNQLIFRLTPNSSYELTIPFQGYKRHTFCESEFSSDFI
FT                 KQTFKKFLNPKVRNGIYCDQSIMGNIQEIFKSMYNSKVIKIRYSQLKVEDL
FT                 QTEEQQLEKIKEIHNFAHRNVKENSIQFIKKYYFPGMRKSIQNFIQNCEIC
FT                 KLEKYDRKPQKFIPIKTPIPTYPGEIVHIDIFAYNANNLFITSLDKFSKYL
FT                 KIRPIKSKSIADIKDVLLQLLYDWNLPAEIVIDNESSFVSNVVEQSILNLG
FT                 VKIFKTPVNRSETNGQVERCHSTIREIARCIKSLNPDMSITCLVQQATYKY
FT                 NNSIHSFIKDTPRNIYIGEFSNDHSFAERSKIREEKDRKIAQLFKEKEEKI
FT                 VDQEYQTYEPGSIAYEKNKTNNKRESRYYPIKIKENHSTYIIDSNNRKVHK
FT                 VNLRKTN"
FT   CDS           5061..6569
FT                 /product="GYPSY47_AG3p"
FT                 /translation="QKNLLTFNIFSLFRLAICVSFTIVYANIGIHDITNNP
FT                 LAVIPLGQARVKTGNIRIIHPIKIDHLEQVLINNDAELKHHVNDNPLYNII
FT                 KLKVNKLHETFNKIRPHTNRERRWDTIGTIWKWIAGTPDAEDLRVINSTIN
FT                 SLIEQNNQQVLINDEIDKRLYDITRIANSVLQLEEERFHQRSNEIIQLIII
FT                 SNLDTLQNYLETLEDAILLAKHGIPSSKLLSLDDLNQMVMFLAEHNIHVSS
FT                 TEEMLIRSTAQVTMNKTHIIYMLKYPFESKHTFEYNYIDSIIKNDKRILLH
FT                 HNYILKNNTHVFESSQPCEQIDNGNYLCDSILLEPSSKCIQKLVHGYHSDC
FT                 TYEKVYSDGIIKRIHDAVILINNATVRISSSCNNDTQFLTGSYIIHFEKCN
FT                 IYINGEEFPNLEITIPNKAFQPTLGLIATETDVIDIPPSKYLNNLTIEHRE
FT                 ILKKIKLENKSLSWKVNLFGSISGSIVFIVFIVIAVLINIYRYQSLRFILP
FT                 SASRETT"
XX
SQ   Sequence 6625 BP; 2624 A; 1216 C; 994 G; 1791 T; 0 other;
     ggcgcccgaa tagggacccg atattgtgaa gtttttataa aattgttttg tgaagtgact        60
     acgtaagagt aatgttgcaa cagaacagtt tgttaaaaac gagtgttacc tatcgccccg       120
     caaaaaagtg acatttttca gtggcagcag ttcgtgtgat accgtagtat caacaagtgg       180
     ttaaaagctc atcttgttga aaaaaggagc aattatctac gaatcgagaa gtaccgcaac       240
     attatcgggt caacgccacg actgaatgac ttccaccgta agaggacagg agcaacagtc       300
     gtcataagaa tttcagaaac atcgccgtaa gaggatagat actgattttc ttcgcagaga       360
     attccagacc atcaccgtaa gaggcacgag gcggaatttt cataatcatt ttgaggtatc       420
     ccctaaaatg aaacttatgt aagtaaaagt gaaataagcg tgagtatata aaatcaaaag       480
     caaagtgaat cgaaaatata aagtgaaagt aataagagtt tccaaattga ttttcaaaaa       540
     ttttcaaaaa aaaaaaacat aaaattaata aataatcaaa atcaatttat aataatcctg       600
     gacaaattaa tagaatcact aaataatttt tcattcaaaa tgtctcaaca agaagtagtg       660
     gatagaattc taagcagact agctgcttta gaagcacaac aacaatcgat tcctggagta       720
     atagattact cggacccccc attacatttt acgaaaactg acggaacagc cgtaagccct       780
     gaatcattcg ataaaatacc tgatcttgta aaagatttgc ctgttttctc tggtgaacca       840
     agtgagttaa atagctggat tgatgatgtt gatggtatag taaaactata ccaaaccaac       900
     agtaccaata ccgtggaaca acaaaacaga ttccacatgg tttgtaaatt cattcgaaga       960
     aaaattagag gtgaggctaa cgattcctta gtggcctcaa atgttggaat aaattggaat      1020
     ttaatcaaga aaaccttaat aacatattac ggagagaaac gtgatcttga aacacttgac      1080
     ttccagataa tgagcgtaca acaaaagggt cggtcgttag aagtgtatta tgacgaagtc      1140
     aacagactat tgtcattaat agcaaaccaa attcatactg atgatcgatt ctctcatcca      1200
     gaagcatcta aagctctcat tgaaacttac aataggaaag ccattgattc cttcattaga      1260
     ggacttgatg gagatgtgta caaattcata agaaattatg aacccacatc attggccgct      1320
     gcttacagtt attgtatttc attccaaaac atcgagtgtc ggaaaatgct taccacacca      1380
     aaatcataca taccaccttc cgcacccagg aatcttatcc caatagtacc aagaatacca      1440
     acaaaaccaa atatgtacag accaccaacc actccaaacc accccaattc accaatttac      1500
     tacagacctc ctacctatct aactccgcaa aatagaccaa atcaaaactt ttacaaccca      1560
     catttacgca ttagaccacc tgtaattcca cagagaaatc cgtttaaacc accagtcgca      1620
     caaaacccgc cacaaccaga acctatggaa gttgatagtt ccatccgttc taaacaggta      1680
     aattacggta atcgtcctaa tttttcagga acatataaac caccattaaa aagaacaaga      1740
     gcatttaata tagaaacaaa cacaggaaac gagcaagtag aatacgaaga ggaaatggca      1800
     aaaacattag aagaatgtga cgatgatgtg ctctccgccc atgatcgata cttggcatgc      1860
     attaacagac aagatggatc agaaacatcc gaaaatggag aagaagccga attgaatttt      1920
     ttagaatgag ttccacatta ccatatttcc tttactatgg taatgcaaaa gaaccattac      1980
     gaatcttagt agacacagga tctaacaaaa actatataca tccaaaatat gcaaaaattt      2040
     ctcacgactt agaaaaacca ttttttatct caactgtagc aggagacgtc aaaataacca      2100
     aatattcaca agctagatta cttaaaccat actcggacaa gatgataaaa ttttttcatc      2160
     ttgaacaact gaaatcgttt gatgctattt tgggttggga ttctttaaag gaaaatggtt      2220
     catggataaa tacagtacaa gacacattaa tagtaaatgg aaaatatact attccattat      2280
     tgctatacaa gcttcaagaa gttaatcaaa taaatattcg cgatgaacat ttacaaactc      2340
     aagaaaaaaa tgatttaaga aatatgctcc acgattttca agatatattt cagcctccag      2400
     ataaaaaact accttttaca acaaaggtta aagctgaaat aagaactatc gatcaatcac      2460
     cagtttacag taaaacatac ccatatccac aagcactaaa atcggaagtg cattcccaga      2520
     taaacaaact tttaaacgat ggaattatac gaacatctcg atctccatac aattcacctg      2580
     tatggattgt ccctaaaaaa cttgatgctt ctaacgaaaa aaaatataga cttgtcatag      2640
     attacaggaa attaaactca aaaaccataa gtgatagata ccctattcca gatactgcat      2700
     ccgttttggc caatttaggt tcaaataaat attttactac attagactta gcttcaggat      2760
     ttcaccgaat tcctatgcat gaaagagaca tagaaaaaac tgcgttttca attaacaatg      2820
     gcaaatacga atttgtacgt atgccttttg gtttaaaaaa tgcaccatcg atttttcaaa      2880
     gagtaatgga tgacacatta cgtgaacata ttggaaaaat ttgctatgtt tacatagatg      2940
     acatagtagt ctttggaaaa actgttgaag aacatttaaa aaatttaaaa actgtgttag      3000
     aaacacttag ggaagctaat tttaaaatac aaccagataa atcagaattt cttaaatcag      3060
     aagttgaatt tcttggcttc attatttctg cagaaggtct taaaccaaac atgaaaaaag      3120
     tagaatgcat ccgaaaatat cccgaaccga agacattaaa agatttaaga gcatttctag      3180
     gactctccgg atattataga cgttttgtaa agaattacgc agaacttgcg aaacccctta      3240
     cgaaactttt aagaggagag gatggccatc gccaaattcc caaaaaccag tcaaaaaatt      3300
     tcaccataac tttagatgaa tcagcaaaaa aatcattcca ataccttaaa gaagtgctat      3360
     gttcaaatga tgttttagct tttccggatt ttgaaaaacc cttcattctt actacagatg      3420
     catcaaatat agcattggga gcagtacttt cgcaacaaac ctcagatgga gagagaccaa      3480
     ttacatttat ttccaggact ctttccagaa cggaagaaaa ttacgcgact aacgaaaaag      3540
     aaatgctagc agtagtatgg gcattacaaa ctctaagaaa ttttatctac ggagcaaaac      3600
     ttaaaatttt taccgatcac ctcccactaa catttacact ttccccaaaa aataataatg      3660
     caaaacttaa aagatggaaa tcatttttag aagaacatga ttatgaatta tgttataaac      3720
     caggtaaagc aaacattgtt gcagatgctt tatcacgtgt tcaaattaac tccttaacac      3780
     ctactcaaca ctcagcagaa gatgatgata acgattatat tctttcaaca gaggcaccca      3840
     ttaatgtttt ccgaaatcaa cttatattcc gattaacccc taactcctcc tatgaactaa      3900
     caataccatt tcaagggtat aaaagacaca ccttctgtga atctgaattt tcaagtgact      3960
     tcattaaaca aacttttaaa aaattcctca atcctaaagt acgtaatggt atatattgcg      4020
     atcaatccat aatgggaaac attcaagaaa ttttcaaatc aatgtataat tcaaaagtaa      4080
     taaaaattcg ttattctcaa ttgaaagtag aagatttgca aacagaggaa caacaattag      4140
     aaaaaattaa agaaatacat aactttgcac atagaaatgt taaagaaaat tctatacaat      4200
     tcataaagaa atattatttc cctggaatgc gtaaatccat tcaaaacttc attcaaaatt      4260
     gtgaaatttg caaactagaa aaatatgata gaaaaccaca gaagttcatt ccaattaaaa      4320
     ccccaatacc tacctatcca ggagaaatag ttcacataga tatttttgcc tataatgcaa      4380
     ataatctttt tattacatcc ttggacaaat tttctaaata tttaaaaatc agacctataa      4440
     aatcaaaatc aatagccgat attaaagatg tcttgttaca gcttttatat gactggaatc      4500
     ttccagcaga aatagtaatt gataatgagt cttcttttgt atcaaatgtt gtagaacaat      4560
     caatattgaa tttaggcgtg aaaatattta aaactccggt taataggtca gaaacaaatg      4620
     gtcaagtaga aagatgtcat tcaactatac gagaaatagc cagatgcatt aaatctctta      4680
     atccagatat gagtatcact tgccttgtac aacaagccac ttacaaatac aacaactcta      4740
     tacatagttt cattaaagat acaccgagaa acatttatat tggagaattt tcaaatgacc      4800
     attcatttgc agaaagatca aaaatacgtg aagaaaaaga taggaaaatc gctcaacttt      4860
     tcaaagaaaa agaagagaaa atagtcgatc aggaatatca gacttatgaa ccaggaagca      4920
     ttgcatatga aaaaaataaa acaaataaca aaagagagag tagatactat cccataaaaa      4980
     ttaaagaaaa tcattcaact tatataatcg attctaataa cagaaaggta cacaaagtta      5040
     accttaggaa aaccaactaa caaaaaaatt tactaacatt taacattttt tctcttttca      5100
     gactcgccat ttgcgtgtca tttacaattg tttatgctaa cataggaata catgatataa      5160
     ctaacaaccc cttagcagta attccattag gtcaagcacg agtcaagaca ggaaacataa      5220
     gaatcataca cccaatcaag atagatcatt tagaacaagt tctcataaac aatgatgcag      5280
     aattaaaaca ccatgtgaac gacaatcctc tttacaatat tataaaatta aaggttaata      5340
     aattgcatga aacatttaac aagattaggc cacacacgaa cagagaacga cgatgggata      5400
     ccattggcac catatggaag tggatcgcag gaacacctga tgctgaagat ttacgtgtta      5460
     taaactccac tattaactct ttgattgagc aaaataatca acaagtactg attaacgacg      5520
     aaattgataa acgcttgtat gatataacta gaattgcaaa cagcgtactc caactggaag      5580
     aagaaagatt tcatcaaaga tcgaatgaaa tcatccaact aattatcatc tcaaatctcg      5640
     atactctgca aaactattta gaaacactgg aagatgctat tttactagca aaacatggaa      5700
     tacccagcag caaactatta tctcttgacg acctgaacca aatggttatg tttttagctg      5760
     agcacaacat acatgtatca tctaccgaag aaatgttgat aagatccaca gctcaggtaa      5820
     caatgaacaa aacacatatc atatatatgt tgaaataccc atttgaatcc aaacatactt      5880
     ttgaatacaa ttatattgat tcaattataa aaaatgacaa aagaattctc ttgcatcaca      5940
     actatatact gaagaacaac actcatgtat ttgaatcgtc acagccctgc gaacaaatag      6000
     ataatggcaa ttatctttgt gacagcatac tcctagaacc atcaagtaag tgtattcaaa      6060
     aactagtaca tggatatcat tccgattgta cttatgaaaa agtatattcc gatggaataa      6120
     ttaaacggat tcatgatgcc gttatactta ttaacaatgc cacagtcaga atttcatcga      6180
     gttgcaacaa tgacacacaa tttctcacag gctcatatat aatacatttt gaaaaatgca      6240
     acatctacat caacggagaa gaatttccaa acctggaaat aacaatacca aacaaagcat      6300
     ttcaaccaac actggggtta atagcaaccg aaaccgacgt catcgacata ccaccatcaa      6360
     aatatctaaa caatctaacc attgagcata gagaaatatt gaaaaaaatc aaactagaga      6420
     acaagtcttt gtcatggaaa gttaatttgt ttggatcaat aagtggttca attgtattca      6480
     ttgtgtttat cgtaatagcc gtattgataa atatttacag atatcaaagc ctgaggttca      6540
     tattaccatc tgcatcaaga gaaacaacat aaagtaaacg agagcatcta gaaacttcga      6600
     ggacaaagtc atttaagagg agagg                                            6625
//
ID   GYPSY47-LTR_AG repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY47-LTR_AG is an LTR of retrotransposon GYPSY47_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY47_AG; GYPSY lineage; GYPSY47-I_AG; GYPSY47-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-345
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY47_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 87-87 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY47-LTR is a long terminal repeat of GYPSY47_AG (its internal
CC   portion is deposited as GYPSY47-I_AG).
XX
SQ   Sequence 345 BP; 150 A; 76 C; 45 G; 74 T; 0 other;
     agttaacacg acatcacagc accgaaacca aaacaccagc accgaaacaa tgcaacacca        60
     ttcatagcga agtatgctat gaccaacaaa gtaatcatcg gaaccagaac cagcatcaac       120
     atcgtatcaa catctggcca aatcaaacct ctaataaata accgtagcat aaacatagta       180
     accataacat aaacaatgaa aagtagggaa ccgaacaata tataacatga aatcaggaaa       240
     tattagccag ttctaaccaa catcttgaac taagaatatg tgcgcgacga attgaaaaaa       300
     taaaattatt tttttaatac aattctaacg catgtgttct taact                       345
//
ID   GYPSY48-I_AG repbase;    DNA;    INV; 5426 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY48-I_AG is an internal portion of retrotransposon GYPSY48_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; CsRn1 lineage; GYPSY48-I_AG; GYPSY48-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY48_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5426
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY48_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 88-88 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY48_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the CsRn1
CC   lineage of other organisms.
CC   GYPSY49_AG, GYPSY50_AG, GYPSY51_AG, GYPSY52_AG and GYPSY53_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY48-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 297-aa GYPSY48_AG1p gag-like
CC   polyprotein (pos. 1402-2292) and the 1068?aa GYPSY48_AG2p
CC   pol-like polyprotein (pos. 2145-5348).
CC   The sequence of the LTRs flanking GYPSY48-I_AG is deposited as
CC   GYPSY48-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1402..2292
FT                 /product="GYPSY48_AG1p"
FT                 /translation="MSKNESDDKNAGPSAIPVRAAGPSSVAGTMEQENSHL
FT                 AIEKISTKLPCFWEDAPSAWFVAAEAEFDISNVTRERSKYSHVLSVLPKNV
FT                 LPKIMDIITMPLPNNPYSHLKSQLLERLNASEEQRITQLLYHVQMGDRSPS
FT                 DFYRHMVQLAGDSANLTSELIRKLWLSRLPKTMEVALIAIGNREINELIKI
FT                 ADRVWEATQAGAVSSIAGVSSSESSGRNPSNETAILRQEISELRSMLRRIS
FT                 FQTGNNRGRQRERSQSQKRARTPSQVRKHPMCYFHFRFGEQARRCQKPCNF
FT                 SQQKN"
FT   CDS           2145..5348
FT                 /product="GYPSY48_AG2p"
FT                 /translation="RKTARKISEPKTCKNTITGSEAPHVLFSFSVWRTSTT
FT                 VPKTLQFFAAKKLICSTAAAGNPRAILGSSRLFIDDEKTTFTFLVDTGADV
FT                 SVIPYNLFGKVIKQAEHQLVAANGSPIATYGTKLLQLSLGLRRVFSHCFTL
FT                 AEVNRPIIGADFLAKHDLWVDLKRKRLIDHLTGQETIATIALVDTPTPKNW
FT                 MIESSIFGEIFKKYPTLVDPPDYKKPVRHSIVHNIETKGSLPFSKPRRLDP
FT                 KKHKIAQAEFQHMLDLGICRVSSSSASSPLHMVPKPDSDWRPCGDYRRLNA
FT                 ITIPDRYPIPHVQDFTMNLDGCKFFSKLDIIRAYHIIPVAEEDIHKTAITT
FT                 PFGLFEFLRMPFGLRNASQCFQRLMNNIFHDLDFVFVYIDDILIASSTRES
FT                 HLEHLHIVLKRLTDHDIKLKPSKCILGVNQIEFLSHTISAKGITPSPEKIM
FT                 AIRDFPSPCSVKQLQRVLGMVNYYHRFIPNVSDKLRVLHQLVKEHNKNRKI
FT                 KFEWSDACEQALNQIKDELSNATMLVHPKSNATYTLTTDASSVAVGAVLQQ
FT                 TSEGILEPLAFFSKTMTPTEQRYSTFDRELLAITLGIKHFRHFLEGRSFTV
FT                 YTDHKPLIHALNSKTEKSPRQCRQLDFISQFTTDIKYITGESNVVADALSR
FT                 IGETNEITNFTYEAIAKEQQKDEQLKQLFEDSNSQANSKFKLNQLILDKNK
FT                 LVFESSTGQNRLYVPQSLRKKTFANLHNLSHPGIRASRKLLSERFFWPSMN
FT                 KDVGNWTRSCVGCQKSKIGRHTRSPLEALSVPKGRFEHVHMDIVGPLPPSE
FT                 GMSYLLTIVDRFTRWPECYPMPDMSAKTLAETFVRNYIPRFGCPSTITTDR
FT                 GRQFQSKLFEELTKLLGTHHIKTTAYHPQSNGMVERFHRHLKGALKACEDN
FT                 THWISRLPLILLGIRVAYRDALKGAPAEMVYGESLRLPSEVFLPSAAKSVE
FT                 DVPEFVQDFKKALRHIDPCPPKLNDTTPVYLPKHLQTCKHVFVRVDKVRTG
FT                 LQAPYEGPFEVVRRCRKFFTVKIKEKNESISIDRLKPAFEMEGVSKTGKTT
FT                 NSQKNVRFAKN"
XX
SQ   Sequence 5426 BP; 1710 A; 1200 C; 1127 G; 1389 T; 0 other;
     aattggtgac cccgacgtga tctgaagtgt gtcgtgaaaa gtgtcgtgat tggtgcaaca        60
     agtgctaagt gcatggctaa tggatagagg aaacgacaac cgtcgtcgct aacgcacatc       120
     acggtcccac ctcttcagct gttcacgtcc ctgttatcat cgtgctgcag cgcaggactg       180
     gagtataacg cacacggaca catacactgc gtgtcggaac attaaggaga gtgcaacgcg       240
     ttaccgcgtg gacagtgttt taccgctact acaaaacctg tcaatccaac gtacggggtg       300
     aatgccatcg tgaaatccgc gtttcggacc atgcggtagc ccacattgtg agtgtcgcaa       360
     aggaaaccac tcacgggttt tttttttctc gttttcggat gggaagaagc cagccctccg       420
     aaaactgacg agtgtcacac gggaccacgc caaagcagca attttcccgt gtgaagaacg       480
     aggcatagga agcaacgcga tcttctattt ggcaaaccac gtgacgcagc catcgcgatc       540
     ttctatttgg caaaccacgt gaagcagcca tcgcgatcct ctatttggca aaccacgtga       600
     cgcagccatc gcgattttct acgtggcaaa cctcgtgaag cagccatcgc gatcctgtat       660
     ggtggaaacc acatgcagca gccatctcga tcctctatgt ggaaaaccac gttaacccat       720
     cgcgcagcag aaatcgagct gtgtaaaaca acgggaagca gcataagatg acgtgccaat       780
     cattcgacgg aacatcatag tgaacgaacg gacgcagatt tcaacgtgaa cgaacgtgcg       840
     gaacatcgtg gatgacgggt gcagcttttt acggtgcaac atcgtagatg acgtgtgcag       900
     tttttcgtcg gcgcagccat cgcaataacg tgtcgagatt ttcatcggcg cagcatcgtc       960
     tttgctgcat gaaccacaac gccgcagccg ctatcgagaa caacgagctg agaacctcgt      1020
     ggtgacctac cggctgctga cgctatatgc cacgatatcg gtgagctcgt tcctttattt      1080
     tattttatct tttctcttat tataacgtat tttcccgcgt tccatcatta tattatatcg      1140
     tatatactat tgcgttaaat attgacatgc attatatttg aatttgccga cctatttata      1200
     tatatgcata cttatacata tttcacaatc gtttcgtgat acgtcgtaaa catttcaaac      1260
     aaaaattttt ttttcatcat aatacgcaat tttcattaaa aaaaaaaaaa aaaaaaaaaa      1320
     aattcaactc aatagtgtaa gcattttaga gagaattagg tacatttttt tattagatag      1380
     ggaatattct gtgaacccaa aatgtcaaag aacgaaagtg atgataaaaa tgctggtccc      1440
     agtgcaattc cggtgcgagc cgcggggccg tcatcagtgg cgggaacgat ggaacaagaa      1500
     aactctcact tggccataga aaaaatttcc acaaaattgc cttgtttttg ggaagacgct      1560
     ccaagcgcat ggtttgtggc agcagaagct gagttcgata tttcaaacgt tacaagggaa      1620
     cgctcgaaat attctcacgt tctaagcgtg ctcccgaaaa acgtcttgcc gaaaataatg      1680
     gacataataa ctatgccatt accaaacaac ccgtactcac atttaaaaag tcaacttcta      1740
     gaaaggctta acgcgagtga agaacaacga atcactcagt tgttgtatca cgtacaaatg      1800
     ggtgatcgta gtccgtctga tttttacaga cacatggttc agctggcagg tgattctgca      1860
     aacctcactt ccgagcttat tcgtaagctt tggttatcaa gattgccaaa aacaatggaa      1920
     gtagcgctca ttgccatcgg aaaccgagaa atcaatgagc taattaaaat cgcagacagg      1980
     gtgtgggaag caacccaagc cggagcggta tcatcaatcg caggcgtttc ttctagtgaa      2040
     agctcgggaa gaaatccctc gaatgaaact gcaatattgc gacaggaaat ttctgaactg      2100
     cgtagtatgc taaggagaat ttccttccaa acaggaaata atagaggaag acagcgagaa      2160
     agatctcaga gccaaaaacg tgcaagaaca ccatcacagg ttcggaagca ccccatgtgt      2220
     tattttcatt ttcggtttgg cgaacaagca cgacggtgcc aaaaaccctg caatttttcg      2280
     cagcaaaaaa actaatttgc tcaacggcag cggcgggcaa cccgagagca atattgggct      2340
     cctctcgtct tttcattgac gatgaaaaaa caacatttac cttccttgta gatacaggag      2400
     ccgacgtgtc cgtcataccg tacaatcttt ttggaaaagt catcaaacaa gctgaacacc      2460
     aactagtagc agctaatggt agccctattg ctacttacgg aaccaagttg ctacagttaa      2520
     gtcttggact taggagagtg ttttcgcact gtttcacact tgctgaagtg aatcgaccaa      2580
     tcattggggc tgatttttta gcgaagcacg atttgtgggt cgacttaaaa agaaagaggt      2640
     tgatcgatca tcttacagga caagaaacga tcgcaaccat cgctttagtg gatacaccta      2700
     cccccaaaaa ctggatgatt gaatcgagca tatttggtga aatttttaaa aaatatccaa      2760
     ctttagtgga tccaccagat tataaaaagc cagttaggca ttcgatagta cataacatcg      2820
     aaaccaaagg aagcttacca ttttctaaac cacgacgtct ggatccgaaa aagcacaaga      2880
     ttgctcaagc agaatttcaa cacatgttgg atctgggaat ctgcagagtg tcctcgtcgt      2940
     cagcttcgtc accgctacac atggtaccca aacctgattc agattggaga ccttgcggcg      3000
     attataggcg tttaaatgcc atcacaatac ctgatcgtta tccgatcccg catgtgcagg      3060
     attttacgat gaacttggat ggttgcaaat ttttttctaa gttggatatc attcgagcgt      3120
     accacatcat acctgttgcc gaggaagaca tccacaaaac ggcgataacc acgccgttcg      3180
     ggttatttga atttctaagg atgccgtttg gcctcagaaa tgcaagccag tgttttcaac      3240
     gactcatgaa taatattttt catgatttag attttgtgtt tgtatacata gatgacattc      3300
     tgatagctag ttcgacgcgt gaatcccatt tagaacactt gcacattgtt ctaaaacgtt      3360
     taacggatca cgatataaaa cttaagccat caaaatgcat tcttggtgtg aatcaaatag      3420
     aattcctcag ccacaccatt tcggcgaaag ggataacacc atcgccagaa aaaataatgg      3480
     ccattcgaga ttttccttca ccatgttcgg tgaaacagct tcaaagagtt ttgggaatgg      3540
     tgaattatta tcaccgcttc attcctaacg tttcagataa gctaagagtg cttcaccagt      3600
     tagtaaaaga gcacaacaaa aataggaaaa tcaaattcga atggtctgac gcttgtgaac      3660
     aagcactaaa tcaaataaag gatgaacttt caaacgctac catgctcgtg catccgaaaa      3720
     gtaatgctac ttatacacta acaacagatg cttctagtgt tgctgtaggg gcagtattac      3780
     aacaaactag cgaaggcatt ttggaacctc ttgcgttttt ttctaaaacg atgacgccca      3840
     cggaacagag gtattccaca ttcgatagag aattgctcgc tattactctt gggataaaac      3900
     atttccgaca ttttctagaa ggtagatcgt tcacggttta tacagatcat aaaccattga      3960
     tccatgccct aaattcaaaa acagaaaaat ccccaagaca atgccgacaa ctagacttta      4020
     tttcacaatt cacaacggat ataaagtaca ttactggcga gagcaacgtt gtggcagatg      4080
     cgttatctcg aataggagaa accaacgaaa tcacaaactt cacatatgaa gcaattgcaa      4140
     aggaacaaca aaaagacgaa cagctaaaac aactatttga agactcaaat agtcaggcaa      4200
     actccaaatt caaattaaat caattaatat tggataaaaa caaactagta ttcgagtcgt      4260
     cgactggaca gaataggttg tatgttcctc aatctctaag aaaaaaaact ttcgccaacc      4320
     tacacaacct atcccatccg ggtattcgcg catcacgcaa gctgttatcc gaaagatttt      4380
     tctggccgtc aatgaacaag gacgtgggaa actggactcg ttcgtgtgtt ggatgccaaa      4440
     aatctaaaat tggtcgtcac actcgctcgc ctttggaagc attatccgtt ccaaaaggga      4500
     gatttgaaca tgtgcacatg gacatcgttg gtccattgcc accatccgaa ggaatgagct      4560
     acttactgac cattgttgac cgttttacac gttggccgga atgctatccg atgcctgata      4620
     tgtcggctaa aacgctagct gaaacatttg taaggaatta cattccaagg tttggttgtc      4680
     catctacaat cacaaccgat agaggcagac agttccagtc aaaactgttt gaagaactaa      4740
     caaagttgtt aggaacacat cacattaaaa cgactgcgta tcaccctcaa tccaatggaa      4800
     tggttgaaag attccatcga cacttaaaag gagcgttaaa agcctgcgaa gacaatacgc      4860
     attggatttc tcgattgcca ctgattctgc tgggcattcg agtagcatac agagacgcat      4920
     taaaaggcgc tccagcagaa atggtatatg gagaaagttt gcgacttcct tccgaagtat      4980
     ttttaccctc tgctgcaaaa tccgtcgagg acgtacccga atttgttcag gattttaaaa      5040
     aagcgctaag gcacattgac ccatgcccac caaaactaaa tgatacaaca ccggtttact      5100
     taccaaaaca ccttcaaacc tgtaaacatg ttttcgtacg ggtagataaa gtgagaacgg      5160
     gtttacaagc accgtatgaa ggaccttttg aggtagttcg acggtgcaga aaatttttca      5220
     cggttaaaat caaagaaaaa aatgaatcta tttcgattga ccgcctcaaa cctgctttcg      5280
     aaatggaggg tgtctccaaa acaggcaaaa ccacaaatag ccaaaagaat gttcgctttg      5340
     cgaaaaacta aatgaaatct caatttaaga gacaaacact ctcacaattc tttttctatc      5400
     gcgactccgt cactggtggg gggttc                                           5426
//
ID   GYPSY48-LTR_AG repbase;    DNA;    INV; 374 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY48-LTR_AG is an LTR of retrotransposon GYPSY48_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY48_AG; CsRn1 lineage; GYPSY48-I_AG; GYPSY48-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-374
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY48_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 89-89 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY48-LTR is a long terminal repeat of GYPSY48_AG (its internal
CC   portion is deposited as GYPSY48-I_AG).
XX
SQ   Sequence 374 BP; 115 A; 61 C; 110 G; 88 T; 0 other;
     tgtggtgttc gcctgttcaa attaagtgaa ttgggaagga cagctttttc tcatcacttg        60
     aggtctgcga tattaagggt taattagggt ctcaagtaga tagttagaga gcttaggaga       120
     taacgggaga gtcgggcagg acacgcataa tgagcgcgag aaatgcgtag cctcgcgaaa       180
     gtgcgtaggt gcgtgagaaa ggacaggtgc gcgagaagga ataggcgcgc gagcgtaagg       240
     cgagagagag aaggtataaa aaggagcatc cgatcggata agctctcttt cttaatactc       300
     cggtatatcg cgacaatact gttctcctgc gcacgattaa gataataaag tgaatataat       360
     tgtagaaact taca                                                         374
//
ID   GYPSY49-I_AG repbase;    DNA;    INV; 5457 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY49-I_AG is an internal portion of retrotransposon GYPSY49_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; CsRn1 lineage; GYPSY49-I_AG; GYPSY49-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY49_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5457
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY49_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 90-90 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY49_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the CsRn1
CC   lineage of other organisms.
CC   GYPSY48_AG, GYPSY50_AG, GYPSY51_AG, GYPSY52_AG and GYPSY53_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY49-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 294-aa GYPSY49_AG1p gag-like
CC   polyprotein (pos. 1438-2319) and the 1034?aa GYPSY49_AG2p
CC   pol-like polyprotein (pos. 2277-5378).
CC   The sequence of the LTRs flanking GYPSY49-I_AG is deposited as
CC   GYPSY49-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1438..2319
FT                 /product="GYPSY49_AG1p"
FT                 /translation="MSLKAGAEGKGEESSSSAGTTKVSAPGDPPLGVERIS
FT                 TKLPTFWEDVPEVWFAQAEAEFELSKISRERTQYTYLIAAMSKEVLAKVLD
FT                 IVKSPDPVKPYSHLKGEILKRLTSSEETRLSKLLYHVEIGDRTPSDFYRYM
FT                 LQIAGDSTDLSVTLVRKLWKSRLPKSIEVALVAVDTKDHAEQLRIADRLWE
FT                 CTQSSGLSEVNTRARVTCDSASDEIRREISELRDMIKKMSNLSQRQHRDHR
FT                 RSFSRERRNFQSPSRDRKPFCWYHYRYGNGATKCVKPCNFSTTRVKHSEEE
FT                 KN"
FT   CDS           2277..5378
FT                 /product="GYPSY49_AG2p"
FT                 /translation="FFHNTSQTLRGRKKLRSSRELADLPRAYSTSPRLFVN
FT                 DMMTSFTFLVDTGADVSVIPFHLAGKAYKPTDLVLQAANGSTIVTYGTKLI
FT                 QVSLGFKRVFTHIFIIASVNRPIIGADFLYKTGILVDIKGRKLIDSTTNLA
FT                 IIGSLALVDTPSPKHFVLEAGDFGRVLHQFPSLVEPPDYRKPVCHNVFHYI
FT                 ETKGPLPFAKPRRLDPQKRKIAHVEFQQMVNLGICRPSSSPGSSPLHMVPK
FT                 GDNDWRPCGDYRRLNAITTPDRYPIPHIQDFTMQLQGCNFFSKLDIVRAYH
FT                 MIPVAEEDIHKTAITTPFGMFEFLRMPFGLKNAGQTFQRFMNSLFNDLSFV
FT                 FVYIDDILIASSTKETHLEHLRIVFNRLAEYDLKIKPSKCVLGVSTINFLS
FT                 HTISANGIIPCADKVEAIKTFPTPKSVKQLQRFVGMVNYYHRFLPSVSNTL
FT                 RPLYKLIAQHTKQKLKTFDWSEECDKAALQVKSDLAKATILSHPRSDAVYS
FT                 LTTDASNFAVGAVLEQHFEGSCQPLAFFSRVITPTEQRYSTFDRELLAIVL
FT                 SIKHFRHFLEGRSFIIYTDHKPLTTALTSKTEKSPRQNRHLDFISQFSSDI
FT                 RYIKGDSNIVADTLSRVAETDSISNLDYKIFSECQRTDEQLKTLLENKKNK
FT                 NSAYKLDKLLLNNTELYFEVSTGKNRLYVPKSLRKETYDGVHNASHPGIKA
FT                 SRKMMTDRYFWPAINKDVANWTRACSACQRAKVVRHTKSPLESFSLPKGRF
FT                 DHIHMDIVGPLPPSEDKIYLLTVVDRFTRWPECYPLTNISAATVAKTFVEQ
FT                 YVSRFGCPLRITTDRGRQFTSRLFEELTKLLGTHHIATTAYHPQANGMVER
FT                 FHRRLKEALKASGNSPRWTVRLPLILLGIRLSYKDEIRGCPAEMVYGQSLR
FT                 LPAEVFVPSSDKIDDDTSDLIVDLKKAFKSVEPSSPKDNNNTNNYIPKALE
FT                 NCRQVFVRVDKVKTGLQAPYDGPYTVVRRFRKFFVIQMKDRNESISIDRLK
FT                 PAFECEAHTKATKPLERSPVTKKHVHFR"
XX
SQ   Sequence 5457 BP; 1603 A; 1157 C; 1186 G; 1511 T; 0 other;
     ttggtgaccc cgacgtgata aaaatcgcgg aacgtgaaaa attgctgacg tgatcaatcg        60
     cccaggagaa cattctccgt cgccgtcatc ggttaagtat ttgccgccga cgtaatccat       120
     tatcccggta catcgctatc ccgtgtgctt gaagtgcatt ttggagtgaa ggagaaatct       180
     accaccgacg cgatttgtgg tttcgccgta tccagtagga taatattaca caaccacgat       240
     tgttcggtcg atcgactact attcaccgtg attgccctgc tgaagcccca tccgttttcg       300
     gagccacgac gtcccgtaag agtacttttt tttctcgggc ccacgtcatc gctgtattga       360
     aggagtaccc tggggttttc ggccagcatc atcgttcccg gagccgtaga gcatttgaca       420
     tcagtagata caaagtgcca ccaccgtgcg ttgtggtcac gagataagca gaacgatcac       480
     atatatcacg tttgatactg tgatcacgga gagcccattg tcatcgtgtt tttcatctgc       540
     aagagctaca agttcgacaa cgtgtccgtg taagcacgga aaccacacga ccaaggggta       600
     gagtggaagc cacccgattt cccgtaagga gcatcactgt cgctgtttgt gaccagaaac       660
     accaccgtgg aagcagtagt gccatcgtgt atttggagcc acgcggtttt ggaagcagta       720
     acgccatcgc gtttttggag ccacgcggtg ttggaagcag tagcgccatc gcgtttttgg       780
     agccacgcgg tgttggaagc agtagcgcca tcgcgttttc ggagccacgc ggtgttggaa       840
     gcagttgtag cgccatcgca ttttggaagc agtagcgcca tcgcgttttg gaagtagtag       900
     cgccatcgcg ttttcggagc cacgcggtgt tgaaagcggc ctcgtatcca gtgatcatcg       960
     atcgacaacc ggtgagcccg ttccttatta ttattattat tattattatt tttcattcgg      1020
     tgatacttgt gccagaaact cagtgtgttt ttatgcgttt tatacgacgc gtgttttttt      1080
     ttctcttttt cggtgcgttt ataagtaaat atttcattaa gtgcaacgtt gttttacgag      1140
     ttttacgaga aaatacgtgc aatttcttac gtgcaatttc attagtacat ttttatcgta      1200
     tacaatttag cgcagtattt ttttttttca cattttcttc gttataaatt atactgaaat      1260
     actacgcgtt ttgaattttt ccttgcattt tataaaaacc ttgtatttat tgaactgaat      1320
     tttgcgatca gtattatagg tcatttttat ccttggtacg tttaaaaatt taagtgcgtg      1380
     tagtgaatta gaaaacaggt tagatttctt tgtattggtt ttgtaaacca cagagtgatg      1440
     tctttgaaag ctggtgccga aggaaagggt gaggagagtt caagttcggc aggaacgaca      1500
     aaggtgtcgg caccgggcga tcctcccctg ggggtagagc gtatatctac gaagttacca      1560
     actttttggg aggacgttcc agaggtttgg ttcgctcaag cagaagcgga atttgagctt      1620
     tcaaaaattt cacgggagcg cacgcaatac acatatttga tcgctgcaat gtccaaggaa      1680
     gtattagcta aggtgctgga cattgtgaaa agtcctgacc cggtaaaacc atactctcac      1740
     ttaaagggag aaattttaaa acggttgaca agtagtgagg aaacacgatt gtcaaaattg      1800
     ttatatcatg ttgagatagg agatagaact ccatcagatt tctatcgata catgctacag      1860
     atagctgggg attctaccga tctttccgta actcttgtga ggaaattgtg gaagtcaaga      1920
     ctgcctaaat cgattgaggt agccttagtt gcagttgata caaaagatca cgctgagcaa      1980
     ttgcggatag cagacaggtt gtgggaatgc acacaatcta gtggactatc cgaagtgaat      2040
     actcgtgcta gagttacatg cgattcagcg tctgatgaaa tccggcgtga aataagcgaa      2100
     ctacgcgaca tgatcaagaa gatgtcaaat ctttcccaac gacaacatcg tgatcataga      2160
     cgcagcttct ctagagaacg aagaaatttc caaagtccat ctcgtgatag gaaaccattt      2220
     tgttggtatc attacagata cggtaacgga gcaaccaagt gtgttaagcc ctgtaatttt      2280
     tccacaacac gagtcaaaca ctcagaggaa gaaaaaaact aagaagctca cgggagttgg      2340
     cggatctccc tagagcatat agcacttctc ctcgtttgtt cgtaaatgat atgatgacat      2400
     catttacctt tttagtggac acaggggctg atgtatccgt cattccattt catttagctg      2460
     gtaaagctta taaacctaca gacttagttt tgcaagcagc caacggaagt accatagtga      2520
     cgtatggcac gaagctgatt caagtaagtt taggtttcaa aagagttttt acccatattt      2580
     ttatcatagc atccgtaaat cgtcctataa taggagcgga ttttttatac aaaaccggaa      2640
     tactagtgga tatcaaaggg cgtaagctaa ttgattcgac cactaattta gcgatcatag      2700
     gatcattggc acttgtggat actccttccc ctaaacattt tgtacttgaa gcaggagact      2760
     tcggacgagt tctacaccag tttccatctt tggtagaacc accggactac agaaagccag      2820
     tatgtcataa tgtgtttcat tatattgaaa ccaaaggccc tttgcctttt gcgaagccac      2880
     gtcgccttga cccgcaaaag cgaaaaatcg cgcatgtgga atttcagcaa atggtaaatt      2940
     tgggaatttg tcgcccatca tcatcaccag ggtcatcacc cttgcatatg gtgccgaagg      3000
     gtgacaatga ctggagacca tgtggggatt accgaaggct taatgccatt acgacaccag      3060
     atcggtatcc tatccctcac atccaggact ttaccatgca actgcagggt tgcaattttt      3120
     tttcaaagct tgacatagta cgagcatatc atatgatccc agtagcagaa gaggacatac      3180
     ataagacggc cattactacc cctttcggca tgttcgaatt tttacgaatg ccttttggtt      3240
     taaaaaatgc cggtcaaaca ttccagaggt tcatgaacag tttattcaat gacctcagtt      3300
     tcgtattcgt ctacattgac gatattctaa ttgccagttc gacgaaggaa acgcaccttg      3360
     agcacttgcg catagtgttc aatcggctgg cagaatacga tttaaaaatt aaaccgtcca      3420
     agtgtgtgct aggtgtatct accattaatt tcttaagcca cacaatttca gctaatggaa      3480
     ttatcccatg cgcggataag gtagaagcga taaaaacatt cccaacgcca aaatcggtta      3540
     aacaactaca gcgatttgtg ggaatggtca actattatca ccgtttctta ccgagcgttt      3600
     caaatacgtt gagacccttg tacaagttga tagcacagca caccaagcag aaattaaaga      3660
     cattcgactg gtcggaggag tgcgacaaag cggcccttca ggtcaagtca gacctagcaa      3720
     aagctacgat actgtcacac ccaaggtccg atgcagttta ttctttaacc acggacgcat      3780
     ctaatttcgc cgtgggagcg gtgctggaac agcattttga aggaagttgc caaccactag      3840
     cattcttctc tagagtaatc accccaaccg aacaaagata ctctacgttc gatagagaat      3900
     tattggcaat cgtgctgagc atcaagcatt ttagacattt tttagaaggc aggtcattta      3960
     ttatatatac tgaccataaa ccgctcacca cagcgctgac gtcaaaaacc gagaaatcac      4020
     ctcgacaaaa tcgtcattta gatttcattt ctcagttctc aagcgacatt cgatacatca      4080
     aaggagacag caacatagtt gcagatactc tctcgcgtgt ggcagaaacg gattcaatta      4140
     gtaacttgga ttacaaaatt ttctctgaat gtcaacgtac tgatgaacaa ttgaaaacat      4200
     tattggagaa taaaaaaaat aaaaactctg cttataaact tgataagctt ttgctaaaca      4260
     acacagaatt gtattttgag gtctcaacgg ggaaaaatag actgtacgtc ccgaaatcct      4320
     tacgtaagga aacatacgat ggtgtgcaca atgcctccca tcctggcata aaagcatcta      4380
     ggaaaatgat gactgatcga tatttttggc cagccataaa taaagatgta gctaattgga      4440
     ctcgcgcatg ttctgcttgc caaagagcta aagtagttag gcacacaaaa tcacctttgg      4500
     aatctttttc acttccaaag ggaaggtttg accatattca tatggacatt gttggaccct      4560
     tacctccatc tgaggacaaa atatatttat taacagtagt agatcgtttc accagatggc      4620
     cagagtgtta tcctctaact aacatctctg cggctactgt tgccaaaact ttcgtggaac      4680
     agtatgtgtc taggtttggt tgtccgttaa gaattacgac agatagagga agacaattca      4740
     cttcaagatt attcgaggag ttgaccaaac tattgggcac acaccatatt gcaaccactg      4800
     cctatcatcc acaagccaac ggtatggtgg aacgtttcca ccgtcggcta aaggaagcct      4860
     taaaagctag tgggaactca ccacgatgga cagttcggtt accattaata cttctcggca      4920
     ttcgtctttc ttataaagat gaaatcagag gttgcccagc agaaatggtc tacggtcaaa      4980
     gtctccgatt acctgcagaa gtttttgtac catctagcga caaaatcgat gatgatacat      5040
     ctgacttaat cgttgattta aagaaagcat tcaaatccgt agagccatcg agccctaaag      5100
     ataacaataa tacgaacaac tacataccta aagccctaga aaattgtaga caagtatttg      5160
     tcagggttga taaggtcaaa acaggacttc aagctcccta tgacggtcca tataccgttg      5220
     ttcgaagatt cagaaaattt tttgtcattc aaatgaagga taggaatgaa tcaatttcta      5280
     ttgatcgact caaacccgct tttgagtgtg aagctcatac taaggcaacc aagccgctgg      5340
     aaaggtcccc cgtaacgaaa aaacatgttc attttcgcta agaataagac cgcctagtcc      5400
     gcaataagcg tttgacggca gatataaaag cgtgactacg tcactggagg gggatcg         5457
//
ID   GYPSY49-LTR_AG repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY49-LTR_AG is an LTR of retrotransposon GYPSY49_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY49_AG; CsRn1 lineage; GYPSY49-I_AG; GYPSY49-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-316
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY49_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 91-91 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY49-LTR is a long terminal repeat of GYPSY49_AG (its internal
CC   portion is deposited as GYPSY49-I_AG).
XX
SQ   Sequence 316 BP; 79 A; 73 C; 85 G; 79 T; 0 other;
     tgtggtgttc ggcaccactg gtggtgttgc gctcctggct gcgtttccga attcaccact        60
     ttcgagcgtc acactgtggt aagattaagt tagtgtaggt aggtagcgat gtaatacgaa       120
     gtataggata cgaaggatag gacacgaagg ataggacacg aataggagcg atcggatgcg       180
     ccgatcgtgg tcctcgagct tgcgagcgat cggatgcgcc gatcgtcgct ctctcatctt       240
     tcgaccgcca atcaatacag ttcactcatc gcaattgtca cgttaaataa aataattgta       300
     tcgcgcaagc cctaca                                                       316
//
ID   GYPSY4_I    repbase;    DNA;    INV; 6288 BP.
XX
AC   .
XX
DT   20-JUL-2000 (Rel. 5.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY4_I is an internal portion of the GYPSY4 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY4_LTR; GYPSY4_I.
XX
NM   GYPSY4_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6288
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY4_I.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
DR   [1] (Consensus)
XX
CC   GYPSY4_I is an internal portion of the GYPSY4 endogenous
CC   retrovirus.
CC   GYPSY4's long terminal repeat is listed in Repbase Update as
CC   GYPSY4_LTR. GYPSY4 has lost activity recently since its genomic
CC   copies are flanked by 1% divergent LTRs. Target site
CC   duplicates are 4 bp-long.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..1702
FT                 /product="GYPSY4_I_1p"
FT                 /note="GAG."
FT                 /translation="MQKRFSDSSLEDYIPSYREYKNRTMTQQESVQIDLHI
FT                 RNCLAEQAQIFDQKIATLTEQLNALKATAPEVTAYKPIEIIPEVRCEEPLD
FT                 IVKSIPEFDGKQEHYISWRQAANAAYKVFEAYDGSSRHYQAVAIIRNKVRG
FT                 SADAILASFNTVLNFHAIIARLDFTYSDKTPVHVIQQDLSTLRQGDQPLLK
FT                 YYDEIERKLTLLTNKTLMTHDAASAAVLNDKYRNDALHTFISGLKKSLKWA
FT                 VFPAQLRDLQTALALAQEAESSNERSIFAANFARHIEEKAQKSGNQRSQGS
FT                 RQNPQQESDAPTIFRKNPHYQKGNGQKPNTSGSARQRYYQKPQESTSEPME
FT                 VDTSSRFRQPTQATNFKGGHSAKSRQSLNHMPQDQKTEYEEQAESEANAAE
FT                 DDLSEVESCNFLGVTPCFRTSHVQ"
FT   CDS           1660..4788
FT                 /product="GYPSY4_I_2p"
FT                 /note="POL."
FT                 /translation="FFRGHSLLPYITRTVAGQTIKLLIDTGTSKNYIKPLL
FT                 GLPHFVPVDKPFQVKSLHGHTRIERKCQIQLFKTKTYFFILENLSDFHGII
FT                 GLDLLKKINANVDFEKNCITYDRGSEPIKFTKCQNVNFIKIDDGDVPEVIK
FT                 DDFNKMINKRTGSFADVNESLPYNINTVATIRTDGEPVYSKLYPYPMGVSE
FT                 FVNAEVKQLLANGIIRPSKSPYNNPIWVVDKKGVDQSGHKLKRMVIDFRKL
FT                 NQKTTDDKYPIPSISTILSNMGEAQYFTTLDLKSGFHQIELAERDREKTAF
FT                 SVNNGKYEFCRLPFGLKNAPSIFQRAIDDVLREQIGKTCYVYVDDVIIFSN
FT                 NKEDHVKHIDWVLNSLQTAGMRVSQEKSKFFKKSVEYLGFTVSRGGIQTSP
FT                 SKVQAIKDFKPPKTLFSLRSFLGLASYYRCFRKGFANIARPLTDVLKGENG
FT                 KISANNSRKVNLELTQDQLKAFNRLKDVLASEDVILAYPNFKKPFDLTTDA
FT                 SGHGLGAVLSQDGRPITLISRTLRDNEVNFATNERELLAIVWALKNLRNYL
FT                 YGVKNLNIFTDHQPLTFAVSDRNPNAKIKRWKAFIDEHNANIFYKPGKENF
FT                 VADALSRQNVNVLEDCPNSDIATIHSEESLTYTIETTEKPVNCFRNQIVIE
FT                 ESNAPSVRSTILFREKTRHVIRFVDRNTLLQTVQDVVNAKVVNAIHCDLPI
FT                 LAFIQHSLVKAFPSTTFRHSKNIVIDIVDKTEQREIIIAEHNRAHRAAQEN
FT                 VKQILRDYFFPKMNSLATEIVVNCKVCSMGKYNRHPVKQAMGETPIPSYVG
FT                 EILHVDIFSTDKTFFLTCVDKLSKFAVVQYITSRAIVDVKAPILQLVNLFP
FT                 KIRIIYCDNEKSLNSETIKNILNNFDIQICNAPPLHSTSNGQVERFHSTLT
FT                 EIARCLKIDKHLNETKDIILLATIEYNRSIHSVTNRKPTELICSAPSDLLT
FT                 ETRDKIVLAQEKQLGYMNRDRIHKKYKVGEKVWLKSNKRLGNKLSPLCTEE
FT                 AIDADLGTTVLMKGRGWSIRTTLSKPKKKKLKTNINK"
FT   CDS           4892..6286
FT                 /product="GYPSY4_I_3p"
FT                 /note="ENV."
FT                 /translation="MKLNDYSHADYIPIIDGDLTIWDRYGYLGHTSNITSY
FT                 ETYVEDTRRQLNYFGKDHMRNLITTDLGHIESLIATIRVHHRHARSINLLG
FT                 TALKVIAGTPDFDDWEQIKFKQGQLIDSANRQIEINTKLQSRLNEITRSMN
FT                 AISKTDNADSEHLFESILAKNRIIITNLEDLILSVTLAKINLISPLILDSV
FT                 DIHELANELLTNTSLADILRVSSVKAFQNNDLLYFLIKYPKPETVCKKINV
FT                 FPVQHNKIILDFENNNVVAECGARIYAVKECNAAMSTTFCKRLQNPTCAQQ
FT                 LVSGTVAQCTTLLGHLDPVTLVEEGVLIINDATFRVEDSLGSSKMISGTYL
FT                 ATYDDRISLNGTHYENHQGVLKKKPAAAVASQINVTSHRDQLSLSFLHELS
FT                 LQNLQHIGSLKSDIISRPILSSGVTIAVVLIVYGIIQSIRYCRVKRRHPDS
FT                 SIEMTIPSRKAEDDFNLTRG"
XX
SQ   Sequence 6288 BP; 2234 A; 1336 C; 1198 G; 1520 T; 0 other;
     ggcgcccacg gcactcttat agaactcaca atatttgttc accagccaaa gctgtgacaa        60
     ataaacgaaa aagtgcgaag tgaactgtga caaacaaatt acaagtgcaa agctaattat       120
     agaactcaga atatttgttc accagccaaa gctgtgacaa ataaacgaaa aagtgcaaag       180
     tgaagtattt tttccgacca agaacacagc aaacaaagcg aaaacaagaa taaaaataaa       240
     aaagctaaac aaacggttaa aacaacatac aaattaaaaa gaaaaaaacg gttaaaacaa       300
     catacaagtt aaaaaaatag aaccccaaca cgaagtgtcg agagagtaaa gaaaaaatca       360
     acaaatcaac aagtgcacgc atcggcagtt taagcagtta cccagaaatg aaatacatgt       420
     aagtgatttg ttcattgtgc cattataaat gcagaaaaga tttagcgaca gtagtttaga       480
     agactatatc ccctcttacc gagaatacaa aaaccgcaca atgacgcaac aagaatcagt       540
     acagattgac cttcacatac gaaattgtct ggcagagcaa gcacaaatat ttgaccaaaa       600
     aatagcaact ttaacagaac aactgaacgc tttaaaggct actgcgccag aggtgacagc       660
     ttataagcct atagaaatca taccagaagt tagatgtgaa gagcccctag acatagttaa       720
     atctattcct gagttcgacg gcaaacaaga acattatatc tcttggcgcc aagcggccaa       780
     cgccgcatat aaagtcttcg aagcttatga cggaagttct aggcattatc aggctgttgc       840
     cataatacgc aacaaggtta ggggatctgc agatgcgatc ttagcatcat ttaatacagt       900
     tttaaatttt cacgcgataa ttgctagact ggatttcaca tattcagaca aaactccggt       960
     tcacgtaatt caacaagatt taagtacttt aaggcagggt gaccagcccc ttttgaaata      1020
     ttacgatgaa atagaaagaa agctgacgct tttaactaac aaaactctca tgacccacga      1080
     cgcagcttcg gcagctgtgt taaatgacaa atatagaaac gatgcacttc acacatttat      1140
     ctcaggcctg aagaaatctc taaaatgggc agtttttcca gcccaacttc gagacttaca      1200
     gactgccctg gcattagcac aagaggcaga atcaagtaac gagagaagca tttttgccgc      1260
     aaactttgct cggcacatag aggaaaaagc gcaaaaatct gggaatcaga ggtcccaagg      1320
     ttcgcgtcaa aacccccagc aagagagcga cgctcccact atctttagga aaaatcccca      1380
     ttaccagaaa ggtaacggtc aaaagccgaa cacttcaggt agcgctagac agagatatta      1440
     ccagaagcca caagaatcaa cttccgaacc catggaagta gacacgtcat cacgctttag      1500
     acagcccact caagcaacaa attttaaagg tggtcattca gcgaaaagtc gccaatcatt      1560
     gaaccacatg ccccaagacc aaaaaaccga atacgaagaa caggcagaat ccgaggcaaa      1620
     tgcggctgaa gacgatttgt ctgaggtcga aagctgtaat tttttagggg tcactccctg      1680
     cttccgtaca tcacacgtac agtagcgggg cagaccataa aacttcttat cgatacaggg      1740
     acttcgaaaa attacattaa gccacttcta gggctgccac actttgtgcc agtcgacaag      1800
     ccattccagg taaaatcact acatggtcat acaagaattg aacggaagtg ccaaattcaa      1860
     ctttttaaaa ctaaaacata tttttttatt ttagaaaatc taagtgattt tcacggcatt      1920
     attggcctag acttactaaa aaagattaac gccaatgttg atttcgaaaa aaattgtatc      1980
     acttatgatc gcggttcaga gccaatcaag tttacaaaat gccagaacgt aaacttcatt      2040
     aaaatagacg atggcgatgt tcctgaagtc attaaagatg actttaacaa aatgattaat      2100
     aaaagaacag ggtcatttgc agatgttaat gagtccctgc cctacaatat caatacagtt      2160
     gccacaatac gaactgacgg ggagccagta tattctaaac tgtaccctta cccaatgggc      2220
     gtatccgagt ttgtcaacgc agaggttaaa caacttctag cgaatggcat aataagaccg      2280
     tccaaatcac cttacaacaa cccgatctgg gttgtcgata aaaagggggt agaccaatcg      2340
     ggccacaagc taaagcgtat ggtcatcgat tttcgtaaac ttaaccaaaa aacgactgat      2400
     gataagtacc ccatcccaag tatttcaacc atattatcaa atatgggcga ggcacagtac      2460
     tttactactc ttgacctcaa atcgggattt catcaaatcg aattagcgga aagggaccgg      2520
     gaaaaaaccg ctttctccgt aaacaacgga aaatatgaat tctgtagact cccttttggt      2580
     ttgaaaaatg cgccaagcat atttcaaaga gccattgatg atgtcttaag agagcagata      2640
     gggaaaacct gttatgtcta cgtcgacgac gtaattattt tctctaacaa caaagaagac      2700
     cacgttaaac acatcgattg ggtgttaaac agtcttcaga cggctggcat gagggtgtct      2760
     caagaaaaat ccaagttctt caaaaagagc gtggaatatc tgggattcac ggtatcccgc      2820
     ggcgggattc aaacttcgcc aagtaaggtt caggccataa aagacttcaa accgccaaaa      2880
     accttgttta gtctcagatc atttttgggg ctagcaagct attataggtg ctttagaaaa      2940
     ggctttgcca acatcgcacg acccctaacg gacgtcttaa aaggcgaaaa tggtaaaata      3000
     agtgccaaca attcaaggaa agtaaacctt gaattaacac aagatcaact aaaggctttt      3060
     aatagactaa aagacgtatt agcctctgag gacgttattt tagcataccc aaactttaaa      3120
     aaaccattcg atttaactac ggatgcctca gggcacggtc ttggagctgt gttgtctcag      3180
     gacggacgtc caattacctt gatttctcga acattacgag acaacgaagt aaactttgca      3240
     acaaatgaga gggaactctt ggccattgtt tgggccctaa aaaatcttcg aaattattta      3300
     tatggcgtaa aaaatttaaa tatcttcacg gaccatcaac cgttgacttt tgccgtgtcg      3360
     gataggaacc caaatgcgaa gataaaacgc tggaaagctt ttattgacga gcacaacgca      3420
     aatatttttt acaagcctgg caaagagaat ttcgtggcag acgccctatc tcgccagaat      3480
     gtaaatgtac tcgaagattg cccaaactct gatattgcca caatacatag cgaagaatct      3540
     cttacctata ctatcgaaac gaccgaaaag cctgtaaatt gctttaggaa ccagatcgta      3600
     attgaagaat ctaacgcccc atcagttaga tctactattt tgttcaggga aaaaaccagg      3660
     cacgttataa gatttgttga ccgtaacaca cttttgcaaa cagtacaaga cgtcgtaaat      3720
     gccaaggtag ttaacgcaat acattgcgac ctacccattt tggcattcat acaacacagt      3780
     ctagtaaaag cgtttccgtc aaccacattc cgacactcca aaaatatcgt gatagacatt      3840
     gtcgataaaa ccgaacagag agaaataatt attgcagagc ataaccgagc gcaccgagca      3900
     gcgcaggaaa atgtgaagca aattctccgg gactactttt tcccaaagat gaattcgctg      3960
     gcaacagaga ttgtcgtaaa ctgtaaggtt tgttcaatgg gtaaatataa tcgacatccg      4020
     gtcaagcaag cgatgggtga gaccccaatc ccatcatatg ttggggaaat attgcatgtt      4080
     gacattttta gtaccgacaa aacatttttt ttaacatgcg tcgataaact ctcaaagttt      4140
     gcggtcgtcc aatatattac ttcacgcgca atcgtggacg taaaggcacc gattttacag      4200
     ctggtaaacc tgtttcccaa aataaggatc atttattgcg acaacgaaaa atctttaaat      4260
     tccgaaacaa taaaaaatat actaaacaat tttgatattc agatttgtaa tgccccacca      4320
     ctccacagca cctctaatgg tcaagtggaa agattccaca gtacccttac agaaatagcc      4380
     cgttgtctaa aaatagataa acaccttaac gaaaccaagg acataatcct tttggcgacc      4440
     attgagtata ataggtcaat tcactcagta acaaacagaa aaccgacaga attaatttgc      4500
     tccgcccctt cggatttatt aacagaaact agggataaaa ttgtacttgc gcaagaaaaa      4560
     caacttgggt acatgaaccg agatagaatc cataaaaagt ataaagtagg cgaaaaagta      4620
     tggctaaaat caaacaaacg attgggtaat aaactgtcac cactgtgcac ggaagaagcc      4680
     attgatgctg acttaggtac gacggttcta atgaaaggaa gggggtggtc cataaggaca      4740
     accttaagta aacccaagaa aaaaaaatta aaaacaaata taaataaata aaaaatttca      4800
     tcgcttatag tacttttaat tttaatattt ttattacagg ttaggatatt tgtgtgtgct      4860
     ggcttccgca atcaccttga caataacgac tatgaaactt aatgactatt cacacgcaga      4920
     ctacatacct ataatagacg gtgacttaac gatatgggac agatacggat atctcggaca      4980
     cacttctaac ataacttctt atgaaactta tgttgaagat accagacggc aactgaacta      5040
     ctttggaaaa gaccatatgc gaaatttgat aactactgac ttggggcaca tagaatcact      5100
     aatagctacg attagggtac accatagaca tgctcgcagt ataaatctac taggtacagc      5160
     actcaaggta atagccggaa ccccagactt cgacgactgg gaacagatta aatttaaaca      5220
     agggcaatta atagattcag caaatagaca gatcgaaata aatacgaaac ttcaatctcg      5280
     actaaacgaa attacaaggt caatgaatgc aataagtaaa acagacaacg cggactcaga      5340
     acacctattt gaaagtatac ttgctaaaaa tagaataatt attacaaacc tagaagactt      5400
     gatactgtcg gtaactctag ctaaaataaa tttaataagc ccacttattt tggatagtgt      5460
     tgacattcat gagctggcca atgaacttct cacaaatacg agcttagcag atattttaag      5520
     agtatctagc gttaaagcct ttcagaacaa cgatttattg tatttcttaa taaaatatcc      5580
     taaaccagaa acagtttgta aaaaaattaa cgttttccca gttcaacata ataagataat      5640
     attagacttt gagaataata atgtagtagc cgaatgcggt gcacgaatct acgccgtcaa      5700
     ggaatgtaac gcagccatga gtaccacctt ctgcaagaga ttgcagaacc cgacttgcgc      5760
     tcaacaattg gtgtctggaa ccgtcgcaca gtgcaccact ctccttggcc atctggatcc      5820
     ggtgacactt gttgaagaag gtgtcctgat tatcaacgac gcaaccttca gggtcgaaga      5880
     tagcctaggc agcagtaaga tgatctcggg aacctactta gccacatatg acgatcgtat      5940
     atctctaaac ggcacccact acgaaaacca ccagggcgtc ctaaagaaga aacccgctgc      6000
     ggcagtggcc tctcagatca atgtgactag ccatcgagat caactaagct tgtcgttctt      6060
     gcacgagctg tcgctgcaga acctccaaca tattggtagt ctgaaatctg acatcatttc      6120
     gagacccatt ttaagcagcg gcgtcaccat cgccgtggtc ctaattgttt atgggatcat      6180
     ccaaagcatc cgttactgtc gagtcaaaag acgacacccc gactccagca tcgagatgac      6240
     gataccttcc cgaaaagccg aggacgactt taacctaacg cggggagg                   6288
//
ID   GYPSY4_LTR  repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   20-JUL-2000 (Rel. 5.06, Created)
DT   20-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   GYPSY4_LTR is a long terminal repeat from the GYPSY4 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY4_I; GYPSY4_LTR; LTR;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-287
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY4_LTR.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
DR   [1] (Consensus)
XX
CC   GYPSY4_I is a long terminal repeat from the GYPSY4 endogenous
CC   retrovirus.
XX
SQ   Sequence 287 BP; 81 A; 71 C; 60 G; 70 T; 5 other;
     agttaacacg cgcagggcca aaatcgctaa ctccacgata agaccggacg cggccgcagt        60
     aacgtcagcg cgactgcaac taagtcgcga aatatgactc ctgcattcca acattctact       120
     gcccggagcg tgtgaagcgc aatgtcagcr ttctgccgtg agcgctgctt cagaagacgg       180
     gctacttcat attaagctta agttttctgt ctttagtttt aaraactcat cwgaacgcgc       240
     atagtcgcak aataaaycac aataactaaa attgttgtct gttaatt                     287
//
ID   GYPSY5-I_AG repbase;    DNA;    INV; 4539 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY5-I_AG is an internal portion of the GYPSY5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   AP protease; GYPSY5-I_AG; GYPSY5-LTR_AG; GYPSY5_AG; Gyspy clade;
KW   gag; integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4539
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY5_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 79-79 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY5_AG is a family of autonomous Gypsy-like LTR
CC   retrotransposons.
CC   GYPSY5-I_AG, an internal portion of GYPSY5_AG, is flanked by
CC   GYPSY5-LTR_AG LTRs. The GYPSY5-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 15 copies; they are
CC   less than 1% divergent from the consensus sequence. Two elements
CC   are
CC   100% identical to the consensus and contain intact ORF, thus the
CC   family
CC   appear to be still active.
CC   The consensus sequence encodes the 1469-aa GYPSY5_AGp protein
CC   (pos. 35-4441), composed of gag (zinc-finger, 309-357), protease
CC   (403-492), reverse transcriptase (pos. 668-837) and integrase
CC   (pos. 1181-1332) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..4441
FT                 /product="GYPSY5_AGp"
FT                 /translation="MLTKEELLCALEVANIEVPPKATLPQLRMLYEQSVPK
FT                 NKMEEQSTQNFIPQRVCADEDEVTNNGNHVAAAAILMKDKAAPTSSTQGAS
FT                 FDATSHQLELMALRAKIMEMEQRQTFTDGRLVHPEELKHLIPEFSDGLGIN
FT                 KWINTIRYNSELYGWQDRTMLLYAGSRLTGAASEWYNGFRNTLKTFDEFAD
FT                 TIKKAFPDRCNEAVIHSQLASVYKKISESYTSYVYRVNALGMSGHVSEEAI
FT                 ITYVIRGLSRDPLYDSLVTKDYRDIYDLIDNIKRYESHLLLRKNPERRSPS
FT                 HINTISPRPIPPRQTTTEPLRCYNCSNHGHHSSQCTQPRRAPGSCFRCGST
FT                 SHVIRNCPVPDRRQLTVAAVQGNDNETAHLDSGENGNFVQLEAYQEVSVAF
FT                 KRNNVWSPGLIITSLFDSGSSKSFINEAIVPVTKLSAPQPSGFRGIGNVNL
FT                 QTLGTVQLKLSFRNQTFIHNFYILPKSYMSLSMIVGRDLLSEFNITLAQFR
FT                 KHYSKLMLMNLNKDKILNLKKPGFYHKLQTLGLLRSSIQAPLPEVCKDSKL
FT                 SDPNISSKFISISDKSEHKQQYDTTFSEMCSINISDEASTINVGEHLSKEQ
FT                 GIALRSIVSNNYINFPDKHIIPSAHKMRISLTHDTPIFTKPRRLSFDERNK
FT                 VKVIVKDLLEKNIIRPSNSPYASALVLVRKKNGEIRKCVDYRPLNKVTIRD
FT                 NYPLPLIETCLEHLGNKKFFTLLDLKSGFHQVAMDEDSIKFTAFVTPDGQY
FT                 EYTRMPFGLKNAPAEFQRFINTILRKFIENEKLVVYIDDILIASQDFKEHL
FT                 EIVSEVLHTLRNNGLELRLDKCKFAYDELDYLGYKANHSGICPSDNHVKII
FT                 KNYPVPQNTKQVQQCLGLFSFFRRFVPHFSSIAKPLTNLLKNNVPFIFDDE
FT                 CKKAFETLRDKLIVAPVLAIYDPKRETELHCDASSIAFGSVLLQKQDDGRY
FT                 HPISYFSKTTSADEAKLHSYELETLAVIYALKRFHTYVHGIPIKIVTDCNS
FT                 LVETLKNRNSSAKIARWSLFLENYNYIIQHRPGLAMSHVDALSRLEHLAAF
FT                 DDVDIDFQIRVAQARDPLIQTLKKELETTDVEGYQLQDGIVFKRSPSNRLK
FT                 LYVPTEMVNNLIRSIHEQIGHLGAEKCCNQIDQNYWFPNRKTRIINFINNC
FT                 LKCIIHSAPSRVNNRNLHSIQKEPYPFDTLHIDHFGPLPTSSLKKKYLLVV
FT                 IDAFTKFVKLYPTTSTSTKEVCNALKQYFSYYSRPKRIISDRGTCFTSAAF
FT                 SNFLSSRGISHVLNATGSPQANGQVERVNRIIRPILSKLSNQTDHVDWVTH
FT                 LLSTEYALNNTIHSSTRFSPSMLLFGVNQRGPSVDILTEYLEDKNKAFSDL
FT                 ETIRAEASFNILKSQQNNEKQHAKHHRPAPVFNEGEFVVIKNVDNTPNSNK
FT                 KLIARYKGPYVIHKRLPNDRYVIRDIDGIQMTQIPYDGVLESDKLRRWIVP
FT                 LGGA"
XX
SQ   Sequence 4539 BP; 1491 A; 929 C; 859 G; 1260 T; 0 other;
     attcagaagt gggataaacc gtttgtgccg aaaaatgctt acaaaagagg aacttctttg        60
     tgctttggaa gttgctaaca tcgaagtgcc tccgaaagca actttaccac aactacgcat       120
     gttgtacgag caaagtgtac cgaaaaacaa aatggaggaa caatcaaccc agaatttcat       180
     tcctcaaaga gtgtgtgcag atgaagacga agtgacgaac aatggaaacc acgttgcagc       240
     agccgccatc ttgatgaaag acaaagctgc tccgacatct tcgacgcaag gtgcttcatt       300
     cgacgcaact tctcatcaat tggaattaat ggcgctacga gcaaaaatta tggaaatgga       360
     acagcggcag acgtttacgg atggtcgatt ggttcatccc gaggagttga aacatttgat       420
     accggaattt tctgacggcc tcggtatcaa taagtggatc aatacgattc gctacaatag       480
     cgaattatat ggatggcagg atcgcacgat gcttttatat gcaggcagtc ggttgactgg       540
     agcagcaagc gaatggtaca atggcttccg taacactttg aagacattcg acgaattcgc       600
     tgacacaatt aaaaaggctt ttcctgatcg ctgtaacgaa gccgttattc atagccaatt       660
     agcatcggtc tacaagaaaa tttctgagtc gtacacaagc tatgtatacc gagtaaatgc       720
     gctgggaatg tcaggccacg tgagtgagga ggctatcata acttatgtca tcagaggact       780
     ttctcgtgac cctctctatg atagccttgt gaccaaggat taccgcgata tttacgacct       840
     gattgataac attaagcgat atgaatccca tcttctgttg cgcaaaaacc cagaacgccg       900
     cagcccatct cacatcaaca ccatttcccc gagaccgatt ccaccaagac aaacgacgac       960
     agaacctctt cgatgttata actgctcgaa tcatggacat cattcatcgc aatgcacaca      1020
     acctcgccga gctccgggtt cctgtttccg atgtggtagc acatcacatg tcattcgcaa      1080
     ctgtcctgtc ccagatagac gtcaactaac ggttgctgcg gtacagggca acgacaatga      1140
     aacagcgcat ctagattctg gggaaaatgg aaacttcgtt caacttgagg cctatcagga      1200
     ggtaagtgta gcttttaaga gaaacaatgt ttggagccca gggttaatta taacatctct      1260
     ttttgattcc ggtagctcta aaagcttcat aaatgaagcc attgttccgg ttacaaaact      1320
     aagcgctccc caaccaagtg gatttcgagg aataggaaat gtgaatttac aaactcttgg      1380
     aacagtacag ctaaaactta gttttcgtaa tcaaacattc attcacaatt tctatatttt      1440
     accaaaaagc tacatgtccc tatccatgat agtagggaga gatttgttat cagaatttaa      1500
     catcacactc gctcaattcc gtaaacatta cagcaaactt atgctgatga atttaaataa      1560
     agataaaatt ctgaacttaa aaaaaccggg tttttaccat aagctccaaa cgttgggtct      1620
     tttacgtagt tcgatccagg ctcccttacc agaggtatgc aaagattcga aattgtccga      1680
     tcccaatatt tcttcaaaat tcatttcgat atcagacaaa tctgaacata aacaacaata      1740
     tgacacaact ttttctgaaa tgtgttctat aaatattagc gatgaggcta gcactataaa      1800
     tgttggagaa catctttcta aagaacaagg cattgcttta agatcaatag tgtccaataa      1860
     ttacattaat tttccggata aacatataat accatctgct cataaaatgc gaattagctt      1920
     aactcatgat actcctattt tcacaaagcc tagacgactt tctttcgatg aaaggaataa      1980
     agtaaaagtc attgtgaagg atttattaga gaaaaatata ataagaccca gtaactctcc      2040
     ttatgcttcc gcactggtac tcgttaggaa gaaaaatggc gaaattcgta agtgtgtcga      2100
     ctaccgacct cttaataaag taacaatccg cgacaactac ccgcttccac tcatagagac      2160
     gtgcctagaa cacttgggca ataaaaaatt ctttacgtta ctagacctaa agagtggttt      2220
     tcatcaagtg gcaatggacg aggattcaat taaattcaca gcgtttgtta ctccagacgg      2280
     ccagtacgag tacacgcgta tgcccttcgg attaaaaaac gcgccagctg aatttcagcg      2340
     tttcattaat acaattttgc ggaaattcat cgagaatgaa aagctggttg tatacattga      2400
     cgacattctc atagcttctc aagactttaa agaacatctt gaaatagtta gtgaagtttt      2460
     gcatactcta cgaaataatg ggttggagct acggcttgat aaatgtaagt ttgcttacga      2520
     tgaattggat tacttaggat acaaggccaa tcattcaggt atatgtccta gcgataatca      2580
     tgtaaaaatt atcaaaaact atcctgttcc tcagaacaca aaacaggtac aacaatgttt      2640
     aggtcttttt tcgtttttcc ggaggtttgt tccacatttc tctagtattg caaaaccact      2700
     tactaatctt ttgaaaaaca atgttccatt tatttttgat gatgagtgta aaaaagcatt      2760
     tgaaacactc cgagataaat tgatagtagc tccggtgctt gccatatacg accctaaacg      2820
     cgaaactgaa cttcactgtg acgcaagttc gatagctttt ggttctgtgc ttttgcaaaa      2880
     acaggatgat ggtagatatc accctatttc gtatttttcc aaaaccactt cggctgatga      2940
     agctaaattg cacagctacg agcttgaaac attggccgtt atatatgcgc tcaaacgttt      3000
     ccatacctat gtacacggca ttccaataaa gatagtgact gattgtaatt ctctggtaga      3060
     aacgcttaaa aatagaaatt cgtccgcaaa gatagcacgt tggtcactgt tcctggagaa      3120
     ttataattac attattcaac atcgccctgg attagcaatg agtcatgtag acgcattaag      3180
     ccgactggaa catttggctg ccttcgatga tgttgatatt gacttccaaa tacgtgtagc      3240
     tcaggctagg gatccgctta tccaaactct gaaaaaagag ttagagacga cggatgtcga      3300
     aggttaccaa ttacaagacg gtattgtatt caaacgatca ccttctaata ggctaaaatt      3360
     atacgtgcca acagaaatgg ttaataatct gatacgatca atacacgaac aaataggtca      3420
     tttgggagcc gaaaaatgtt gcaaccaaat agatcagaat tattggtttc ctaacagaaa      3480
     aacacggata ataaacttta taaataactg cttgaagtgc attattcact ctgctccatc      3540
     tagagtaaat aatcggaacc ttcatagcat ccaaaaagaa ccttacccat ttgatacctt      3600
     gcacattgac cattttggac cgctacctac atcatcttta aagaaaaaat acttattggt      3660
     agtaatagac gcatttacga aattcgttaa attgtatcca acaacttcca ctagtacaaa      3720
     agaggtgtgc aatgctctaa aacaatattt ctcttactac agtcgaccta aaagaataat      3780
     tagcgatcga ggtacatgct ttacttcagc cgcattttcc aatttccttt cttctcgcgg      3840
     aattagccat gtgttgaatg ccacaggatc accacaagct aatggtcaag tggaaagggt      3900
     caatcgcatt attcgtccca tattgagcaa attatcaaat cagaccgacc atgtagattg      3960
     ggtgacccat ttgctatcta cagaatacgc tcttaataat accattcatt cgtccactcg      4020
     tttttcccct tctatgctat tgtttggtgt taaccaacga ggcccttcag tagatatatt      4080
     gaccgaatat ttagaagaca aaaacaaagc attttcagat ttagaaacta tacgtgcaga      4140
     agcatcattc aatattttaa aatcacaaca aaataatgag aaacaacatg ctaaacacca      4200
     tcgccctgct cccgtattca atgaaggaga gtttgttgta attaaaaatg tagataacac      4260
     accaaattca aacaaaaaac tcattgccag atataaaggt ccatacgtta tccacaaacg      4320
     tttacctaat gacagatatg ttatacgtga tatcgatgga atacaaatga cgcaaatacc      4380
     atatgatgga gtgttggagt cggacaagtt gagaagatgg atagtgcctc tggggggagc      4440
     ttgatcggaa tatgttcata aagctacact taagattaag ggtagggcta tacatatgca      4500
     ggaaaaattg aggtcaattt ctcgtcagga tggccgagc                             4539
//
ID   Gypsy5-I_AP repbase;    DNA;    INV; 4553 BP.
XX
AC   Contig832;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5AP;
KW   Gypsy5-I_AP; Gypsy5-LTR_AP.
XX
NM   Gypsy5-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4553
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 445-445 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3458-3931] - Integrase core
CC   'GTAG' target site duplication
CC   LTRs are 97% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           3281..4438
FT                 /product="Gypsy5-I_AP_3p"
FT                 /translation="MAHDMAGHRALDQTLKKIQEHYWFSKMRRYVQMHIGG
FT                 CLDCLVNKKPGGKQPGELHPIPPGKRPFAVVHLDHLGPFETSLKGNRFLLV
FT                 LIDNLTKYVLLFPAKSTHTQAAIRSLQKFVDQWGLPDRLITDRGTCFTSKA
FT                 FQDNCQHNGIRHTLNSSRHPQANGQVERTNRTLLPMLAIQAQDQKLWDQKL
FT                 REVERDINNTESKTTRYTPFELIHGYRPQFHSSVLRLLDGVGTHQPLNSAE
FT                 LQVKARDNILKTQVSMKERYDQKMNKSISYEVGEIVAMLRAPNPGQSTKLQ
FT                 TKYRGPLQVIGKLPGNTYRVAEMARDGKHIYATTAHVSQLKAVSIMQEEQF
FT                 EKKGSGSSADEDEENNKSNADLPRVEETVKRQRKPPKYLKDYV"
FT   CDS           join(631..2082,2086..3111)
FT                 /product="Gypsy5-I_AP_1p"
FT                 /translation="MSDAARNWFLSKNFVSWSTFREKFKLVFVRELRMADK
FT                 WDAMRSRVQHKDESLMSYFQDMVQLWALFVYCVLFVYAFNKTVLISKIRSS
FT                 SSKPLSNIFRSGKLCKGVRLQFEELRDYVLQGILSRELAMYAFGRKHDDED
FT                 QLLIDILEWQRQSDRRGDQPNTSVITKVDHSTMWSKKETTSNQSEPSKFTS
FT                 ATRTITKTGSPTSDSRHSTIKCYNCSGFGHIARDCPRLKRPMKCSLCSAEG
FT                 HTRGKCPSVKQEHPAQTCQVVVAGCAGKNPFGKQVKINQVEFNGLIDSGST
FT                 VCLIRSSAAVRTKLPIVSSIKPLYAVGDMKTPRITSLAEILGELVIDGVKT
FT                 DKVQFLVVEDKAIPVEVLIGQSWLNLPQITYHKQDDTFVVEYSDMDVEAIC
FT                 GNINKHEHGVQVCLVQEQSTSKVSLSTDDVIIGSQVNSTQKEELTVLLNKY
FT                 RTVFILNLQELGCTDLVTMEIVEEQNSKPVSMKPYRTSEERRQIAEITDEF
FT                 ERMPFGLRNAPAEFCRLMDQVLGTLKREGVVRCYIDDVIIPATDWRDMCRK
FT                 VERVFQALERAKLTLNPTKCAFGVTELDYLGFNIKEGQLRPGRKIAVIENY
FT                 SRPNNVHELRRFLGLTGYFRRFITHYADISAPLTALTKKDLPWKWTDAQQG
FT                 AFEQLRRILTSAPVLKLYNHESPVTEVHTDASAKGLSGMLMQGDTEKSLHL
FT                 VYAVSKRTTEAESHYHSSRLELYAIVWTLIRLRPYLLGIRFTVVIDCQALV
FT                 YLNTNKSEKPQVARWFDLLQEFEMHIKYRSGEQLAHADALSRLEGTTDSVQ
FT                 AVEEALDNRSLVMTLMTLEERVRS"
XX
SQ   Sequence 4553 BP; 1445 A; 776 C; 1095 G; 1237 T; 0 other;
     ttttcagaag tgggataata aatccatagt tcgcgagtgt agttgccgtt ttgatttcgt        60
     tttaacacgg gaaacggttg gtgctcttta cattcattag tcgctactgg tgttgcgaaa       120
     ccacgaggtt tagtggtaat agtgtacgga ggaagtaacc gtggcgcaca agttgacgtt       180
     acggtgtgtc aatcgatgac tgcatcgcta gtggagataa gctggttatg tttacatgtg       240
     ataagccgtt gttatcacaa agattttctt gtcagtattg agcgaatcgt ttgttgtaac       300
     gatgtcgagt gatcgagtga cgttgttgaa attacagcac ctaattataa tgaattgtac       360
     caattagtga acgagcaacg agttagactc aaacagctag aagatgaatt agcacgggta       420
     aatgtgaaaa atgacgagac atcattgaac actaagacaa atgatgaatc gatagagttt       480
     cgtgtcatcc cagacgtcaa taagtcagtt aaatgtttta ctggattgga accttctcac       540
     gtagccgaag attggttgga aacgatagag ggtttagctg atttgaatcg gtggccatca       600
     aaattttgtc tacattttgc acgttcgaat atgtcggatg cggcacgtaa ttggttttta       660
     tcgaaaaatt ttgtgagttg gtccacgttc cgtgagaagt tcaaactagt gttcgtacgt       720
     gaattacgca tggccgacaa gtgggacgct atgcgcagtc gtgtacaaca caaggatgaa       780
     tcactgatgt catattttca agatatggtg cagttgtggg ctctgttcgt atattgtgtg       840
     ttgttcgttt atgcgtttaa taaaactgtt ttaataagta aaattcgttc gtcttcgtct       900
     aaacctttga gtaacatttt cagaagtggg aagttgtgca aaggtgtcag attacagttc       960
     gaggaacttc gcgattatgt tctacagggc attttatctc gggaactcgc gatgtatgca      1020
     tttggaagga agcacgatga cgaagaccaa ttactcatag atatattgga gtggcaacgt      1080
     cagtctgatc gtcgtggaga tcagccaaac acttccgtaa ttactaaagt cgatcatagt      1140
     acgatgtggt caaaaaaaga aacaacaagt aaccagtcag aaccaagtaa gttcacatcg      1200
     gcgacacgaa ccattacgaa aacaggatca ccgacatctg actcacgaca cagtacaatt      1260
     aagtgttaca attgttctgg ttttggacac atagcacgcg attgtccgag actaaaacga      1320
     ccaatgaaat gttcattgtg tagcgccgaa ggacatactc gaggcaaatg tccttctgtt      1380
     aagcaagaac atcctgccca aacgtgccag gttgtggtgg cggggtgtgc agggaagaat      1440
     ccgtttggga aacaagtgaa aattaaccaa gttgaattca atggactcat tgattcaggt      1500
     agtacagtat gtttaatccg atcgtcagca gctgtacgga ccaaattacc aatagtgtca      1560
     tcaatcaaac cattgtatgc tgtgggtgat atgaagacac ctagaatcac ttcattagca      1620
     gaaatattgg gagagctggt tatcgatggg gttaagactg acaaggtgca attcttagta      1680
     gttgaagaca aagcaattcc agtagaagta ttgattggac agtcttggct caatttgcct      1740
     cagattactt accacaaaca agatgacacg tttgtcgttg agtactcaga tatggacgtg      1800
     gaagcaatat gtggcaatat taataagcat gaacatggag tccaggtatg cttggtgcaa      1860
     gaacagtcga catcaaaagt gtcactgtca acagatgatg tgataatagg cagtcaggtt      1920
     aactccacgc aaaaagaaga actaacagtg ttgttgaata agtatcgtac cgtgtttata      1980
     ttaaatttac aagaattggg ttgcacggat ttggtgacaa tggagatagt ggaagaacaa      2040
     aacagtaagc ctgtatcgat gaagccgtat cgcacatccg aataagagcg aagacagata      2100
     gcagaaatta ctgacgagtt cgaacgtatg ccttttggtt tgagaaatgc tccagctgag      2160
     ttttgccgat tgatggacca ggtgttggga actctcaaga gggaaggtgt tgttcgttgt      2220
     tacatcgacg atgtcattat tccagcaaca gattggagag acatgtgtag gaaagtggaa      2280
     agagtatttc aagctcttga acgtgctaag ttaacattga acccaaccaa gtgtgctttt      2340
     ggagtcactg aattggatta cttaggtttc aatattaagg aaggccagct gcgtccaggg      2400
     cggaaaatag ctgtaattga gaattactca agaccaaata atgtccatga actgagaaga      2460
     tttctcggat tgacaggata cttccgtcgt ttcataactc attatgcgga catttctgca      2520
     ccactgacgg ctttgacgaa gaaggatcta ccatggaaat ggacggatgc acaacaagga      2580
     gcatttgaac aattgaggcg tatactgaca tctgctccag tgttgaaatt atacaatcac      2640
     gaatcaccgg tgactgaagt acacacagat gctagcgcaa aaggtctatc gggcatgtta      2700
     atgcagggtg acactgagaa gtcactacac ttagtgtatg cggtgagcaa aagaacaact      2760
     gaagcggaat cacattatca ttccagtaga cttgaattat acgctattgt atggacgtta      2820
     attcgattga ggccatatct gcttggaatc agattcacag tggtgattga ttgtcaggct      2880
     ctggtatatt tgaacaccaa caagtcagaa aagccacagg tggctcgttg gttcgatcta      2940
     ttacaagaat ttgaaatgca tatcaagtac cggtcaggcg agcaattggc tcacgctgat      3000
     gcattgagtc gtttggaagg tactacggac agtgtacaag cagtagaaga ggcattggat      3060
     aatcgatcct tggttatgac attaatgact ttggaagaac gtgtacgatc ctgatacatg      3120
     tcaattaatc aacatattgg agaagggtga aggtgaccga actccatatg agaggaacgc      3180
     tgtaaataaa ttcaagttgt tggatggtgt attgtatcga gaattagagg ggataagtcg      3240
     ttttgtggta cctaagcctc tgagaaaggg gaaagtgata atggcccatg atatggcggg      3300
     tcatagggca ttggatcaga cactaaagaa aattcaggaa cactattggt tttcaaaaat      3360
     gcgtagatat gtacagatgc atatcggtgg atgtttggat tgtctggtca acaagaagcc      3420
     tggaggaaaa caaccaggag agctacatcc tattccccct ggaaaaagac catttgcagt      3480
     tgttcacttg gatcatttgg gaccttttga aaccagtttg aagggcaata gatttttatt      3540
     agttttaata gataacctta ccaaatatgt attgttgttt ccagcaaaat ccactcacac      3600
     tcaagcagct attagaagtt tacagaagtt tgttgatcaa tggggattgc cggatcgttt      3660
     gataacagat agagggacat gttttacttc caaggcgttc caggataact gtcaacataa      3720
     tgggatcagg catactctca attcgtctcg acatccacaa gcaaatggac aagtggagag      3780
     gaccaataga accttattgc caatgcttgc aattcaagca caagatcaaa aattatggga      3840
     tcagaagttg agagaagttg aacgtgacat aaacaacacg gaaagcaaga ctaccagata      3900
     cacaccattt gagttgatcc acggataccg gcctcagttt cattcaagtg tgttgagatt      3960
     actagatggt gttggtacac atcagccttt gaattcagca gagttacagg tcaaggcaag      4020
     agataacatt ttgaaaactc aggtatcaat gaaagaaaga tatgatcaga aaatgaacaa      4080
     atcaataagc tatgaagttg gagaaatagt ggcaatgctg cgtgcaccta acccaggtca      4140
     atctaccaag cttcagacca agtatcgggg cccattacaa gttataggga aactacctgg      4200
     aaacacatat cgagtcgctg agatggcaag ggatggtaaa cacatttatg ctacaacggc      4260
     tcatgtgtct cagttgaagg cagtttcaat tatgcaagag gagcagtttg agaaaaaagg      4320
     aagtgggtca tcagcagatg aagatgaaga gaataacaaa tcaaatgctg atctgccaag      4380
     ggtggaagaa actgttaaac gtcaaagaaa accaccaaag tatttaaaag attatgttta      4440
     gttaagtcta tctaaagaac tgatttgttt aattttgttt aaaatattaa tttagttaag      4500
     tttgttttgt ataatgactt atcgaggtcg ataagtaagg gtggatggcc gag             4553
//
ID   Gypsy5-I_Dmoj repbase;    DNA;    INV; 4593 BP.
XX
AC   scaffold_6390;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dmoj;
KW   Gypsy5-LTR_Dmoj; Gypsy5-I_Dmoj.
XX
NM   Gypsy5-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4593
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1050-1050 (2009).
XX
DR   Genome; scaffold_6390; Positions   61890   57298.
XX
CC   Positions [1645-2070] - Reverse transcriptase
CC   Positions [3437-3736] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..3498
FT                 /product="Gypsy5-I_Dmoj_1p"
FT                 /translation="MALSKSLDGDAAYWLSQISFAGMTWMQFKELFLQNFE
FT                 GHETTAATIFNILNSGPNVDEGLASYGSRTVTSLVSKWKDVSIEEIAVSVV
FT                 LAHAAKIEPKLQRTIFTTNIKSRNEMRNELSAFDFGKRKSNSVPENSASKN
FT                 MRLQPISKCHFCGKQGHKVADCRARRIPGNSQQNSTQRDTRVLEKQRKSTI
FT                 ICFKCGEAGHIQSACPRGSSALVKNRVEEKRVNICHVKEPLGNLIQSGESY
FT                 PFYFDSGAECSLVREAVSRKFSGKRINNVVHLKGIGNNSISTMQILSNVII
FT                 DEYSLEVVFHVVLNEYLNYDIILGREILCNGFSVTISNEKVELLKSKSICA
FT                 VAVSDNLVDLTTVDSGVSGLDKVRLLAILKKYSNSFINGIPKSRVITGQLE
FT                 IRLVNPNKTVQRRPYRLGLEEKQIVRNMIEELLKANIIRPSCSPFASPIIL
FT                 VKKKNGSDRLCVDFRELNSNTVDDKYPLPLINDQIARLCGAKYFSCLDMAS
FT                 GFYQIPIHPNSIDRTAFVTPDGQYEFLAMPFGLKNAPSVFQRAVMKALGEL
FT                 AYSYVIVYMDDIMIVAETIDDAFNRLEYVLKILSEAGFSFNVAKCSFLKSS
FT                 VEYLGFEVREGEIRPNPRKKRSLSDLPPPQSVTQVRQFIGLASYFRQFIPQ
FT                 FSQIMKPLYGLTCKDKVFEWKLEHEEIRQKIIKALTDEPVLTIFNPDYPIE
FT                 LHTDASMDGYGAILLHRIDGKPRVVEYYSRRTSSAESRYHSYELETLALYN
FT                 SMKHFRHYLQGKDFVVYTDCNSLKASRLKAELTPRVHRWWAYMQSFNFDIQ
FT                 YRPGSKMAHVDFFSRNLLPNKMNTQVPIKRVQLAEISNNWLLAEQQRDPET
FT                 SLIISKLQNDELEESIAKTYELRSKILYRKVQRNGKTRCLPVIPRPFRWSV
FT                 VNHVHEAIVHLGWEKTLDKMYEFYWFDNMRKYVRKFVEKCITCKLTKPSSG
FT                 KPQVELHPIPKADIPWHTVHIDITGKLSGKSDQKEYVIVQTDAFTKFVYLY
FT                 HTVNINAESCISAIKSLISFFWCANKDNCRSGQMLYGQ"
XX
SQ   Sequence 4593 BP; 1499 A; 834 C; 991 G; 1269 T; 0 other;
     gagagatggc acagcgaagg tgggcagttt cgagaagaga ttgaaagagc gaacatgtcg        60
     cggcccagaa agcgtccggt tatggatttt aatgatattg aaagtgctaa cccgacatca       120
     gaagtgggat cagatccacc ccaaacaaat cccgatgacc gcttgtgcgc gatcttggaa       180
     tcgcaacacc gaaacttgct ggaagttata aacgcagtga aaagtggtta aaatgaacaa       240
     agtacaaaaa aaataattat attgccaaaa ttcaatccca atgttacggg atcgagtgca       300
     gcagcttggt gtgctatagc cgactttata ctgaccgaaa accctttgga aagctctacc       360
     cttctcatgg cacttagtaa atcgttggac ggcgacgcag cttattggct gtcccaaata       420
     tcgtttgctg ggatgacctg gatgcagttc aaggaattgt ttctacagaa ctttgaaggc       480
     cacgaaacaa cagctgcaac tatcttcaac atcttaaata gtggtccaaa tgttgatgag       540
     ggtctggctt catatggaag ccgaacagtt acgtcacttg tctccaaatg gaaggatgtg       600
     agcatcgaag aaatcgctgt atcggttgtg ttggcgcatg cagctaaaat tgagccgaaa       660
     ttacaacgaa cgatatttac aaccaatatt aaatctcgta atgagatgcg aaacgagctt       720
     agtgcatttg actttggcaa gaggaaaagc aactcggttc ccgaaaactc tgcgagtaag       780
     aatatgcgac ttcaacccat ctctaagtgt cacttttgtg ggaagcaagg acataaagtg       840
     gccgattgtc gtgcaagacg aatcccagga aattcacaac agaactcaac tcagcgcgat       900
     acacgtgtct tggagaagca gagaaaatct acaataatct gttttaaatg tggagaagct       960
     ggacatattc aatcggcctg ccctagagga tcatcagcac tagttaaaaa tagagtagaa      1020
     gaaaaacgtg taaacatttg tcatgtaaaa gagcctcttg gtaatttaat acagtccggt      1080
     gagtcgtatc cattttattt tgattctgga gctgagtgtt ctcttgtaag agaagctgtg      1140
     tcccgaaagt tttctggcaa aagaattaat aacgttgttc accttaaagg tatcggaaat      1200
     aattctataa gcacgatgca aatattatca aatgtcatta tagacgaata ttcacttgaa      1260
     gttgtatttc atgttgtgtt aaatgagtac ctaaattacg atataatatt aggtcgagaa      1320
     atcctgtgta atggttttag cgttacaata tcaaacgaaa aagtcgaact tttaaaatca      1380
     aaatctatat gtgcggtagc agtttcagat aacctcgttg atttgaccac tgtagatagt      1440
     ggagtaagcg gcctagacaa agttcgtttg ttagcaattt taaaaaaata ttctaattct      1500
     tttattaatg ggataccaaa aagccgagtt ataacaggtc aactggaaat acgcttagtg      1560
     aaccccaaca agacagtaca acgaagaccg tatagactag gattggaaga gaaacaaata      1620
     gtgaggaata tgattgagga attattaaaa gcaaatatta tccggcctag ttgttcgcca      1680
     tttgccagtc ccatcatact agttaaaaag aagaacgggt cagaccgact ctgcgtagat      1740
     tttcgagaac taaattctaa cacagtggat gataagtatc cgttgccgtt gataaacgat      1800
     caaatagcta ggctttgcgg cgcaaagtat ttttcttgtc tagatatggc gagcgggttc      1860
     tatcagattc ctatccaccc aaattcgata gatcgcacag ctttcgtcac tccagacggg      1920
     caatatgagt tcttagcaat gcccttcggg ctaaaaaatg ccccgtcagt gtttcaacga      1980
     gcagtgatga aagctttagg agaacttgca tattcatacg taatcgttta catggacgac      2040
     attatgatag ttgctgaaac gatagacgac gcatttaacc ggttggaata tgtgttgaaa      2100
     atattgtcgg aggctggatt ttcttttaac gttgctaagt gctcgttttt aaaatccagc      2160
     gttgaatatc tgggctttga agtcagagag ggtgaaatcc gcccaaatcc ccgcaagaaa      2220
     cgttcactgt ctgacttgcc ccctccacaa tctgtaactc aagttagaca atttattgga      2280
     ctggcgtcat attttcgaca atttatccca cagttttcac aaataatgaa gccactgtat      2340
     ggtctcactt gtaaagacaa agtatttgaa tggaaattag agcatgaaga gattcgtcaa      2400
     aaaattatta aagcattgac agatgaaccg gttcttacca tattcaatcc ggattatccg      2460
     atcgaactgc atactgatgc cagtatggat ggatacggag cgattttgct gcataggatt      2520
     gatggtaagc ctcgcgtagt cgaatattat agtagacgaa cttcttccgc tgagtctcga      2580
     tatcattcgt acgaattaga aactttagct ctatacaact caatgaagca ctttcgccac      2640
     tatttacagg gcaaagattt tgtagtttat acagactgta attcgttgaa agcctcacgt      2700
     ttaaaggctg agctgacgcc aagagtccat cgttggtggg cttatatgca atctttcaac      2760
     tttgacatac aatatagacc tggtagtaaa atggcgcatg tagacttctt ttctagaaat      2820
     cttttaccca ataaaatgaa tacccaagta cctatcaagc gggtacagct agctgaaatt      2880
     tcgaataact ggcttttggc ggagcaacaa agagatccag agacttcttt gataatttcg      2940
     aaacttcaaa atgatgagct tgaggaaagc atagcaaaga cttatgagct tcgatcaaaa      3000
     attctttatc gaaaagttca aaggaatgga aaaacacgat gccttccagt tatcccccga      3060
     ccgtttagat ggtctgttgt gaaccatgtc cacgaggcaa ttgtacacct tggttgggaa      3120
     aagaccttag acaaaatgta tgagttttac tggtttgata acatgcgtaa atatgtgcgc      3180
     aaatttgtag agaaatgcat tacatgcaaa ttgacaaaac catcgtcagg caaaccacaa      3240
     gtagagctcc atcccatacc aaaagcagat attccgtggc acacggttca cattgacatc      3300
     actggtaaat taagcggaaa aagtgatcaa aaggaatatg taatagttca aaccgatgcc      3360
     ttcaccaaat tcgtttactt atatcacaca gtcaatatta acgcagaaag ttgcattagt      3420
     gcaatcaaat ccttgatttc gtttttttgg tgtgccaaca aggataattg cagatcaggg      3480
     caaatgcttt acgggcaatg actttaacaa attttgcacc atgcaaaaaa ttgacttaca      3540
     tttgatagca acgggggcta gtcgagcaaa tggccaagtt gaacgcgtta tgagagtact      3600
     gaaacatatg ctaaccgcca ttgagagtag tgagcgttct tggcaagacg ctttaggtga      3660
     aattcaattg gctataaact gtacaacaaa tcgaactaca aaagccagcc cattagaatt      3720
     actaattgga aaagaagtaa gacctttaaa tatgttacat gtttgtgaaa atgaagataa      3780
     gacagatata agtaatgtaa gaaagattgc caaagaaaat attgaacaga acgctcgtta      3840
     cgaaaaagag agattcgaca aaaataagtc aaaaattgtt agatttaagg ccggcgatta      3900
     tgcactgctc aagaatgagg aaagacacca aactaaatta gatcccaaat ttaaaggtcc      3960
     gttcttagtg acagaggttc tcgatggaga ccgttatgtt ttgaagtcct tagtcaacaa      4020
     gcgaacttat aagtattcgc atgagtcgtt gaggcgtatg ccggcggagg ggattcccat      4080
     tgagttggaa atgtgtagag acggcgttga aagagacgtc aatgaaggcg ttgaaagaga      4140
     cgtcaatgaa ggcgttgaaa gagacgtcag tgacatgtta gtggagtcta acatgtgaga      4200
     tatcagacac tatgccgggg aatcttgctg atatgtgact taactactaa agctattagg      4260
     gacacgagtt aatgtgttat cctattgagt cgctggtagg cacgtatagt aagattttgc      4320
     gtgggctgtt gtcctgatga tctaagtaaa cctcacataa ctagtggaaa tccttttgcc      4380
     accggataca tcacaaaaat aattgttcta tcttggaaac tctgtcaatt gaatgaccta      4440
     ctcgagaaaa tataaattga ctgtattttt atttaaagta ataagtttgg actgatttgt      4500
     cttttaaatt gagctgtaca tactgctgtt tagtttattt tattagtttt ttagattgta      4560
     acacacgagg acgtgtgaac gtcagaatgg ccg                                   4593
//
ID   Gypsy5-I_Dpse repbase;    DNA;    INV; 6846 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dpse;
KW   Gypsy5-LTR_Dpse; Gypsy5-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-6846
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1051-1051 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   34162   41007.
XX
CC   Positions [4311-4814] - Reverse transcriptase
CC   Positions [5913-6398] - Integrase core
CC   LTRs are 97% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1987..3594
FT                 /product="Gypsy5-I_Dpse_1p"
FT                 /translation="MVVSRSTENLALSEDTGKHCQICSEVIVYQVQLLSTS
FT                 CGHTFHRVCFTAKSGNKRKCPTCQQDLNITSASAENLSPIGPSTSRARMPS
FT                 VTQSLQTRSQSKRVEALSPLEMANSENANRSPISVDPQQNQATMAETIQQS
FT                 IVDAIRVAMVEQTRILATSMADQTNRLVRAISDGLQSTASVPSPNINAARM
FT                 QPVAELEQQTIEQLFRLSTSEQVPVPGINQSGNSSSPSNLGQTRNVGSGVS
FT                 TGSSASSLRADRVSQIMSNWKLRFTGKAGMSIEDFIYRIEALTKQTLDGNF
FT                 EITARYASNLFDGSASEWFWRYHKSVPEVRWADLCLALRGQFKDDRTDRNI
FT                 RTEIELRKQRPNESFDDFYGVIAALADKLSEPMSEAALVETLRANLLADIQ
FT                 HEILYESAATVKSLRHLVRTREIFMQSVAKTKPPLAAPRTLPRRQVNAILD
FT                 ESIAPDSEEVGEEEDLEVSAVEFVCWNCGGKGHRYQECMAERRVFCYGCGR
FT                 ADTYKPSCRKCNPHTAKNSLSRAPPKSARKQLVNQATNTE"
FT   CDS           3792..6767
FT                 /product="Gypsy5-I_Dpse_2p"
FT                 /translation="MLFGKPVIGLMDTGASVSCIGGSCASDVIRNKVQYKP
FT                 LSLKVRTADGKSQSIVGKISAKVTYRGESKDPSLTGNLYLGIDFWTAFELL
FT                 PLHLMTQNLRIETLEDPTMRALLPSQQVLLQEVIALFPSYSKQGLGKTSVI
FT                 THTIEVADAKPIKQRHYAVSPATEKLMYEELDRMLKLGVIQESVSSWSSPV
FT                 VLVKKPGKVRLCIDCRKVNSVTVKDAYPMPLIDGILSRLPKAEFITSIDLK
FT                 DAFWQIPLDQKSRDKTAFTVPGRPLYEFVVMPFGLTNAPCTLSRLMDKVIP
FT                 AHLRNEIFIYLDDLLVISDNFEHHLEVLSLVASQLSKANLTINVEKSKFCR
FT                 KEVKYLGHVIGGGNIRTDPDKIATVKDFPAPQSIKQVRRFLGMTGWYHKFI
FT                 HNYAAISSPITDTLKSKRKFIWTDEAQLAFESLKSQMCSAPVLHSPNFSIP
FT                 FSIHCDASHTGVGAVLMQENNEGADVPIAFMSKKLNKCQRQYTVTEKECYA
FT                 AVLAVKKFRAYIEGQEFTIITDHASLKWLMSQADLSSRLARWSLKLQGFEF
FT                 KILHRKGSDNIVPDAVSRTHSEDLSFLAIDSMLVDPDSPEFKSPEYQSIKE
FT                 KIRLNSSRLPDLKIKDERIFRRAEHADGTKITDDSCWKLWIPPSLVKPVLK
FT                 AAHEDPLCAHSGINKTLERLRRSYYWPNLAVDVKELINNCHICKTTKHPNQ
FT                 PLKPPMGNTGLPSRFFQKLFVDFLGPYPRSKSGNIGIFVVLDHLSKFPFLK
FT                 PVRKFTADSIKRFLEEDLFHCFGVPETIVSDNGVQFKSHTFNSLLDKYNIS
FT                 HVYTAFYSPQANASERVNRSVLAAIKSYVDPDQRNWDEKLSSICCALRSSH
FT                 HLAMSTTPYRLAFGQHMVTDASSYKLMRNLDMLEDRGVQFSREDSFDIIRS
FT                 KAKGSIQAQHFRNARSYNLRTRQISYKDGQEVYRRNFQQSNFAKGFSAKLA
FT                 PTFIKSRVRRKLGNCYYELEDLQGRLVGKFHTKDIKP"
XX
SQ   Sequence 6846 BP; 1965 A; 1606 C; 1457 G; 1818 T; 0 other;
     agataatctg gtgctagccg tggtcatgcg tgtgcatgtg tgtgtgctct ctcttctctt        60
     caaaacttac aggtattccc ctcgccgaaa gatcttttgg acgtggccgg aacatgaacg       120
     tacgtaagtg aacgaactcc tagttaacgt ttataaactt gtatcataaa gtaacaaaag       180
     aaaaaaacca tacatgagcc cggtcgcccg tattctttga tttttcccta atttatgttg       240
     gagctttttt tgttgtaaag aggccttaag cccacgaaca gctcaagagc tttagaagct       300
     ttaagcttta gcgtagatca gcggcagcag gtgcttcacc cctatgcgac ggttattagt       360
     tactcttact tttgcattaa taccaaatca ccgaaaatga agaaatctta aattacaaaa       420
     gttcctactt aagtattcat tattattgtt attattcatt caattattcc cagtacccta       480
     ccaccggttc ttaagatcat atgttttatt cctattattt aaaattatta ttccatagtt       540
     ataattcttt tattacccta gcttatactc cacccatacc tatatatcat tttccttcta       600
     cccatgtatt tagctttagg cactatcgat aaaaataaat attgttaatg aattggaaat       660
     gaattgctag aagatttttg tttaggagcc atgcagggat cgatgaggga gagtgaggta       720
     tgacccccgg cgggaaaagg gatcatccat aagacatatt ttcttcggaa ataggatgat       780
     caaggttggg agggccatgg ctgttgcatc caacaccagc acagctaccc gtcgggtcgg       840
     atatgcatgg cggaagccca cttccctgtc cccttaattc ctttgtccct tctaattccc       900
     ccagcctcct catcctcctt ccccaacccc ctaacaccag tcatacggtc atacgcaggg       960
     tatcgcacgc gaaaaaataa taagataagg catcgacgcg agcacgtata ggaaaggacc      1020
     agtataggaa cccccccata ctaccgacca tacagccgga gccagcgcgt gcaccagtcc      1080
     tgcccgatac acccccgacc agctcgagtg gcaccgccac acacaacaat cgttgtatgt      1140
     gatatgctac atttatctta ttttggcgcc caacgtgggg cccgatccgg cttgccccat      1200
     ttaaagaaat aacttggtca aaagtaacac ctgactttta tccttgctag accgtttttt      1260
     tgtggttttt ttgctcgcct ttcctctgca acttatccag tggatactgt ggatccgtgt      1320
     aagctcatca tggcctacag ggcctagtat cgtacagggt atattggcgt gcagtagggc      1380
     cgatacactg gaagtgttat aacttatatt ggctataact ccgtgggtca agcttagcct      1440
     atcaactagt tgaagattgt tataggagct aagcgagaac actactgcag gaaaggagaa      1500
     cgcattccaa atcgtttatg atgaaattct acgaagattg cccctaatta agtgggtttt      1560
     ggctgtcctg aggaacccct gagaagatta ctgaggttgc aagcctcggt aagcctaggt      1620
     gacatcggac tcccatatta cctgatgatt agtggaacta atccagcacc ttcatcagcc      1680
     ccaatacttc tgatctgacc ttttagattt cgctggatga gggataattt atcctgccac      1740
     ggacctaact tgtgaggcag atttcagtta taagtagatt accccattcc tgttccttcc      1800
     ctacccgaaa acaatgcaat ccgctttact ctattcgtac ccaaaaaaac gattgcatgg      1860
     ctcctaaact gttttgatat ctacatatat atatctatat ctattgactg tgactttttt      1920
     gtattatttt ttttgcattt gctatatata tctaataaat tcatacttgg tggtgcccaa      1980
     accgaaatgg tggtgtctcg tagtacggag aatttagccc tctcagaaga cacggggaaa      2040
     cattgccaaa tttgctccga agtaatcgtt taccaggtac aactattgtc gaccagttgt      2100
     gggcacacct tccacagagt gtgcttcacc gctaaaagtg gtaacaaacg gaagtgtccc      2160
     acttgtcagc aagacctaaa catcacatcg gcctcagctg agaatcttag tcccattggt      2220
     ccgtctacgt ctagagcacg aatgccatcg gttactcagt cccttcagac tagaagtcaa      2280
     agtaaaagag tggaagcgtt aagccctctt gagatggcta actcagagaa tgccaacagg      2340
     tctccaatct ccgtcgaccc tcaacagaat caggccacta tggcggaaac tatacagcag      2400
     tccatagtgg acgcgattag agtagctatg gtagagcaaa cccgaatttt ggcgaccagc      2460
     atggctgatc aaactaaccg gctagttcga gccatttcag atggacttca aagtacggca      2520
     tctgtaccct ccccgaacat aaatgcagct cggatgcaac cggtagcaga actagaacag      2580
     caaacgatcg agcaactttt tcggctgtcc actagtgaac aggtaccagt gccgggaatt      2640
     aatcaatcgg gaaatagttc gtcaccctcg aatttggggc aaacccgtaa tgttggctca      2700
     ggagtttcca caggttcctc cgcttcatcc cttcgggcag accgtgttag ccagataatg      2760
     tctaactgga aactgcggtt tacgggaaag gctggtatgt cgattgagga cttcatttac      2820
     cgtattgaag cacttacaaa acaaactttg gacggtaact ttgaaataac agctcgatac      2880
     gccagtaacc tctttgatgg gagcgccagc gagtggtttt ggcggtatca taaaagtgtc      2940
     cctgaagtcc gttgggcaga tctatgccta gcattgcgtg gccaatttaa agacgataga      3000
     acagatagga atatcagaac agagatcgaa ttaaggaaac agcgaccaaa cgagtccttt      3060
     gatgattttt atggcgtaat tgccgcattg gcagataaac tgtctgagcc catgtctgag      3120
     gcagccttgg ttgagacact gcgagcaaac cttttggctg atatacagca tgaaatttta      3180
     tatgagtcgg ctgcgactgt gaaatctcta cgtcacctgg tccgaacgcg agaaatattc      3240
     atgcagtccg tagctaaaac caagcctccc ctggcggccc cccgaacttt accacgccgc      3300
     caagtcaatg ctatattaga cgaatctatt gccccagata gtgaagaagt aggtgaagaa      3360
     gaagatctgg aagtatcagc cgtagagttc gtctgttgga attgcggtgg caaaggccat      3420
     cgataccaag agtgcatggc cgaacgtagg gtattttgct atggttgtgg cagggccgat      3480
     acttataagc ctagttgcag gaagtgcaac ccccacacgg caaaaaactc gttgtcgcgt      3540
     gcaccgccga aaagtgcacg caaacaactg gtcaaccaag cgaccaatac cgagtgacca      3600
     attcttctcc ttccactgac cttattatac cagacgtgtc aaacagcgta tacgctgacc      3660
     accttgctag ccctccaaat cgatcccagc gccgaagaag cgattttaag aaacattgca      3720
     aacttgagaa aagactgctc ttagcttctg tagttggaaa accaaatgat ttacgacccc      3780
     atgctcagat tatgcttttt ggtaaaccag tcataggact aatggatact ggagcttcag      3840
     ttagctgcat agggggaagt tgcgcgtccg acgttattcg gaataaagtc caatataagc      3900
     cgctgtccct aaaagttaga actgccgacg gaaagagcca aagtatagtc ggcaaaattt      3960
     ccgcaaaagt cacgtataga ggggaatcca aggatccttc cttgacgggt aatctctatt      4020
     taggaatcga tttttggacg gcttttgaac ttttaccgtt gcacttgatg acacaaaatt      4080
     tacgtattga aaccttagaa gaccccacaa tgagggcgct tctgccttca cagcaagtat      4140
     tactacagga ggtaatagct ctcttcccat cttactcaaa gcaaggtcta ggaaagacct      4200
     ctgtaatcac tcacacgata gaggtagccg acgcaaagcc cattaaacaa cgccactatg      4260
     cggtgtcacc ggcaacggag aagctaatgt acgaggaatt agaccgaatg ctgaagcttg      4320
     gggttataca agaatcggtt agttcctggt cttcgcccgt agtgctggtt aaaaagcctg      4380
     gcaaggttag attgtgtatc gattgtagga aagtaaactc ggtcacggta aaggatgcat      4440
     atcccatgcc ccttatagac ggaatcctga gtagactacc gaaagcagag ttcatcacca      4500
     gcatcgatct aaaggacgcg ttttggcaaa ttcctctcga tcaaaaatct cgtgataaga      4560
     cagcgtttac cgtgcctggc cgtcccttat acgagtttgt cgtcatgcca ttcggcttaa      4620
     ccaacgcacc ctgtaccttg tcgcgactta tggataaagt cataccagcc catctacgga      4680
     atgaaatatt catatatctt gacgacctct tagttatatc cgataatttt gagcaccatc      4740
     tggaggtgtt gtccctggtc gcatcccaac tttccaaggc caatcttact ataaatgtgg      4800
     agaaaagcaa attttgccgg aaagaagtta aatatttagg ccacgtgatt ggtggtggga      4860
     atattcgcac tgatcctgac aaaatagcca ccgttaagga ctttccagct ccccagtcga      4920
     tcaaacaagt tcgtcgattt cttggaatga caggctggta ccacaagttc atccacaatt      4980
     atgcagctat cagttcaccc attacagata ctctgaaatc taagcgcaag tttatttgga      5040
     ctgacgaggc tcaacttgct ttcgagtcat taaagtccca aatgtgttcc gcgccagttc      5100
     tacatagccc aaatttctcc ataccatttt caatacactg tgacgccagt cataccggcg      5160
     taggggcagt tctaatgcaa gaaaacaacg agggcgcaga cgtgccaatt gcttttatgt      5220
     cgaaaaaact taacaaatgc cagaggcagt acactgtaac tgaaaaagag tgttacgctg      5280
     cggttttagc cgtaaaaaag ttcagggcct acattgaggg ccaagaattc acaatcatta      5340
     cagatcatgc ctccttaaag tggctaatgt cgcaggctga tcttagctcc cgattggctc      5400
     gctggtcctt aaagttgcag ggatttgaat ttaaaatctt acaccgaaaa gggagtgata      5460
     acatagtccc cgatgccgtg tcccgtactc actcagaaga cttgtccttc ttggcaattg      5520
     atagcatgtt ggtcgaccct gattctcctg agttcaaatc accagaatat cagtcaatta      5580
     aagagaagat taggttgaac agttcccgat tgcctgatct gaaaatcaaa gatgaacgca      5640
     tctttcggcg tgcggaacat gccgatggaa ccaagatcac agacgattcc tgctggaaac      5700
     tttggatacc cccatccctt gtaaaacccg tcctcaaagc tgcccatgag gatcccttgt      5760
     gtgcccacag tgggataaat aaaacccttg aaagactcag gcgatcttat tattggccaa      5820
     acttagcggt ggatgtcaaa gaactcataa ataattgcca tatctgtaaa accacgaagc      5880
     atccaaatca acccttaaag ccaccaatgg gaaatacagg attaccttct cgattctttc      5940
     aaaaattatt tgtagacttt ttaggacctt atccgagaag caagtcagga aatattggca      6000
     tctttgtcgt gttagaccat ctgtcaaaat ttccattttt gaagcccgta cgaaaattta      6060
     cagcagattc cataaaacgc ttcctggaag aagacctctt tcactgtttc ggggtccccg      6120
     aaaccatcgt aagcgataat ggggtccaat ttaaatctca cacttttaac tccttgcttg      6180
     acaaatataa tatctctcat gtctatactg ccttttattc tcctcaagcc aatgcttcgg      6240
     agagagtaaa tagatccgtt ctggcggcca tcaaaagtta tgttgacccg gatcaacgta      6300
     attgggatga gaaattaagc agcatttgct gtgcacttcg gtctagtcat catttagcca      6360
     tgagcactac cccgtatcgg cttgcttttg gacagcatat ggtaaccgac gccagtagct      6420
     ataaactgat gcgtaaccta gacatgttag aagatcgcgg tgtccaattt tcgcgagaag      6480
     attccttcga cataattcgc agcaaagcaa aaggctctat acaggcccag cacttccgaa      6540
     atgccagatc ctataactta cgaacgagac aaatttccta taaggatgga caggaagtat      6600
     atagacgtaa ctttcagcaa agcaatttcg ctaagggctt tagcgcaaag ttagcaccaa      6660
     cctttataaa gtcccgagtg cgcaggaagc taggaaactg ctattacgaa cttgaagatc      6720
     ttcaaggccg ccttgtaggc aaatttcata ccaaggatat aaaaccttga catgaattgt      6780
     tacaagcgcg gttcccactt tgggtgtccc accccaaacg tgatttaagt gggggggatt      6840
     atatag                                                                 6846
//
ID   Gypsy5-I_Dya repbase;    DNA;    INV; 5365 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dya;
KW   Gypsy5-LTR_Dya; Gypsy5-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5365
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1052-1052 (2009).
XX
DR   Genome; chrU; Positions 1912815 1918179.
XX
CC   Positions [4459-4935] - Integrase core
CC   'ATTA' target site duplication
CC   LTRs are 96% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           464..2002
FT                 /product="Gypsy5-I_Dya_3p"
FT                 /translation="MAAKHSAGISSEVSQGVENSCAVCKEILAPTVLSATT
FT                 SCRHKFHKKCIINHLKSTQTCPVCKADCNESNLSHSNNTLFAELDAATAGT
FT                 SGVSECQDNNDIFPLRRNTRSGRIRGTPSRRGVSTRNTYRGNLDRILTEPP
FT                 TNSSMALSTHPELMNFIQFTVSQQQAQLMDNLTSYLGKTIETSIKSHLDNF
FT                 QLPQPTYTNSTPDNIQPNTDLSRNVSNQNRYSHNLDNNVETRGVNRSNASS
FT                 YVSPEKVSGIIQKWGLKFDGSKTSIRIDEFIYRICSLTKQNLGNDFGLLCD
FT                 HLYLLFAGKASDWYWKFHRNSPNFDWNTFCGEFRKRFEDIETDYDIWEGIR
FT                 KRKQGENETFEDFQETMERLIDRLQNGVSEAQLVELLVRNSKPSLHHELLH
FT                 LKIPNRAQLRYEVRRHEQFYNNLRTFKPKPYRSCVAELTTEEEETGLVRVD
FT                 EEVNQIQRRNTPTCWNCDKQGHRFDDCMAKRIIFCYGCGLKEKYKPTCPNC
FT                 NPGNRQKDVSLSNKMHP"
FT   CDS           join(2830..4356,4360..5340)
FT                 /product="Gypsy5-I_Dya_1p"
FT                 /translation="MFAEVDNMLALDVIEESTSAWSSNCVLVKKGDKNRLC
FT                 LDSREVNKVTQRDAYPLPHIDGILSRLPPAKFISGIDMKHAYWQIPLDEKS
FT                 KQYTAFTIPNRPLYQYKMMPFGLCNAAQTLCRLMDRVIPAHLRNRVFVYLD
FT                 DLLVLSEDFESHMLLLQEIALCLRKANLTINVSKSKFCMKEIIYLGFIIGN
FT                 GQIRTNPDKVKAIVEFPQPTSIKQLRRFLGLAGWYRRFVENFATISFPLTE
FT                 LLKKKNTLEWNGEAQTAFENLKSCLTASPILITPDFSKQFILLCDASSFGV
FT                 GCVLAQERDGVELPISYMSEKLSKAQRNYSVSELECLAVIKGIKKFRAYIE
FT                 GQDFLVITDHAALQWLMRQKDLSGRLARWSMKLRAFTFTIKHRSGSQNVVA
FT                 DTLSRQNDPAIDEFCQNGPIVDVDSPHFKSTEYLDLIKTISNNQSRFPDLQ
FT                 IRDGYIYKRTTFVSDDIKQENPWKLWIPSALVPDILFQAHDAPSSSHCGMS
FT                 KTVEKLKRYLFWPMVTQVRNYISNCVICRTTKSPNTVLKPPMGKPLTSDRP
FT                 FQKLYIDLLGPYPRTKKGHIGLLIVVDHNTRFHFLLPLKKFTAPKICDYLK
FT                 GAIFYTFGVPEVILSDNGSQFKSSYFQAFLTSFGVQQKLTAIYSPQANASE
FT                 RLNRSVLAAVRAYIGKDHTNWDDNLDAISGSLRASLHRSTGSSPYFLTFGQ
FT                 NMILNGKDYSLLRTLNLLADDTRLSKPEALELQRRQAKLNLNRAHEENANR
FT                 YNLRTRQIEFKNGDFVYARNFTQSNAVKKFSSKLAPVFIPAKVYKKRSSYY
FT                 YELEDERGKKLGVFHLKDIQARKQGVSSDKASLK"
XX
SQ   Sequence 5365 BP; 1824 A; 1023 C; 1047 G; 1471 T; 0 other;
     catttttgcg cccaacgtgg ggcccgacaa gtccttaact tgttatagca cactaagctc        60
     taaagtaatc catccacagt taaaacacaa tataactaat ttcaataaat taacatattg       120
     gattgagtgc atcgatttgg aaggaatagt aaaatttagg aacatgcgat ttaatttgaa       180
     agagaatgga tcgaccaaat gcaactgttt cgaatccaca gaagctcatc accatacgtt       240
     tcttcactca actttattta caatttgatt ttttggaata cattatactt acacttcaat       300
     aagtccgtat attgtccgat tttcaagtaa acaaaagtaa acatgaggca atagaccagc       360
     tacaatccac taacaaatag agatacaact aagattctga tagaagtgat cgacataaag       420
     aaagacaaac caaataatta caacatatct taataacaag aatatggcag ccaagcatag       480
     tgcaggtatt tcatctgaag tttcacaagg cgttgaaaat agctgtgccg tatgcaaaga       540
     aatcttagca ccaaccgttt tgtcagcaac aacatcgtgc agacataaat ttcataaaaa       600
     gtgcattata aatcacttaa aaagtacaca aacatgtcca gtttgcaaag cagattgcaa       660
     cgaatcgaat ttatctcact ctaataacac tctgttcgct gaattagatg ctgccacagc       720
     tggtacatct ggcgtaagcg aatgtcagga taataatgat attttcccat taaggagaaa       780
     taccagatca ggcaggatcc gaggtacacc ttctagacga ggagtgtcta caagaaatac       840
     ttacagaggg aatttggata ggatcttaac agaacctcca acgaattcta gtatggctct       900
     tagtactcac ccagaattga tgaactttat ccagtttact gttagccaac aacaggctca       960
     acttatggat aaccttacct cttatttagg gaagactata gagacatcta ttaaaagtca      1020
     tttggacaac tttcaattac ctcagcccac atatacaaat tccacacctg acaatatcca      1080
     accaaataca gatttgagca ggaacgtttc caatcaaaat cgatattctc ataatttaga      1140
     caataatgta gaaacaagag gcgtaaacag gagcaatgca agctcatatg ttagcccaga      1200
     aaaagtatca ggaattattc aaaaatgggg attaaaattc gatggtagca aaacaagcat      1260
     taggatagat gaattcattt acaggatatg ctcacttacc aaacaaaatc taggtaatga      1320
     ttttggactt ctatgtgacc atttgtacct tctgtttgca ggaaaagcaa gcgattggta      1380
     ttggaagttt catcgaaaca gtccaaattt cgattggaac acattttgtg gcgaatttag      1440
     gaagagattc gaagatatag agacagatta tgatatttgg gagggaatcc gaaaacgcaa      1500
     gcaaggagaa aatgaaacat ttgaagactt ccaggaaacc atggaacggt tgattgacag      1560
     actgcaaaat ggagtttccg aagcacaatt agttgagtta ttggttagaa attcgaagcc      1620
     tagcttacat catgagttgc tacatcttaa aatcccaaac agagcacaac tccgatacga      1680
     agtgcgcagg catgaacagt tctataacaa tctcaggacg tttaagccaa aaccctatcg      1740
     ctcctgcgtg gcagaattaa ccaccgaaga agaggagaca ggtttagtaa gagtagatga      1800
     agaagtaaac caaattcaac gtcgtaatac cccaacttgt tggaattgtg acaaacaagg      1860
     ccacagattt gatgattgta tggctaaaag aattatattt tgttacggtt gcggacttaa      1920
     agaaaaatac aagccgactt gtccaaactg taatccggga aaccgacaaa aggatgtttc      1980
     tctgagcaat aagatgcatc cgtagattca gaagttgcta agttaaagtc aatcacagaa      2040
     acccgtgaat ttcaggagat agaaccttta ggtcagcctg atattcatta ttcctttata      2100
     cccttacaca taagaattca aaattacaat aataagcgta gagaaatatt tggtaaagta      2160
     gatagtatag ggactcattt aaaacccaga cgatctacta gccgattgag agaattttgg      2220
     aagaaggttc gtcgtgaccg acagaaactt atttccgcta tagtacttag ctctgaccaa      2280
     agactctata cggatattca tatagagggt caagattaca aggctttatt agattctgga      2340
     gcaacaataa gttgtgtagg cggattagct gctcagaact tccttaaaca caacaacgta      2400
     aaaaaatgtt ctggcgaaat tcgcgctgcg aacggaacaa aaagcaaagt agtttcaaaa      2460
     cttacaactt ccattaagta tggagatacg atagacaatc ttgaattatt tataatacca      2520
     gaacttcaac aggatgtata tttaggcatt gatttttggc aaaagtttgg attattaaat      2580
     aaagttacga gcaatccgaa cattgctgag ttagacattg gtactttgga tgatgatgaa      2640
     gattctccaa aatatcatga gctgaacgaa ggagaaagac ttcggctgga gacagtaata      2700
     aaaacatttc catcctttgc ttccgaaggt ttaggtcgta ctaccttgtc cacacatagc      2760
     attgatatag gaaatgcgag tcctgttaaa caacggcatt ggccagtttc acctgccgtt      2820
     gaaaagctga tgttcgctga agtggataac atgctagcct tagatgttat cgaagagtct      2880
     actagcgctt ggagcagtaa ttgcgtgtta gtaaagaaag gagacaagaa ccgtctatgt      2940
     cttgattcta gagaggtaaa caaggttact cagcgggacg catatcctct accacatata      3000
     gacggcatct taagccggtt accaccagct aaatttataa gtggtatcga catgaagcat      3060
     gcatactggc agataccgct cgacgaaaag tctaagcaat acactgcgtt tacaataccg      3120
     aatagaccgc tatatcagta taaaatgatg ccctttggtc tctgtaacgc agcccaaact      3180
     ctttgtcgtc ttatggatcg agtcattcca gctcatctta ggaatagagt atttgtttat      3240
     ctggacgact tattagtttt gtccgaggat tttgaatcac atatgctttt attacaggag      3300
     atagctttat gcttacgtaa agcaaatctc actatcaatg tcagcaaatc taaattttgt      3360
     atgaaggaga tcatatatct cggttttata attgggaatg gacaaataag aaccaaccca      3420
     gataaggtta aagcgatagt agaatttcca caaccaactt cgattaagca gttgcgaaga      3480
     tttctaggat tagcgggatg gtaccgacgg tttgtagaaa actttgccac tattagtttt      3540
     cctttgacgg aacttcttaa aaagaagaat acgcttgaat ggaacggaga ggctcaaacc      3600
     gcttttgaaa acttgaaatc atgtcttact gcctcgccaa ttctcataac accagatttt      3660
     tccaagcaat tcattttgtt gtgtgacgcc agctcttttg gtgttggttg cgtactggct      3720
     caggagcgag atggagtaga acttccgatt tcgtatatgt ctgaaaaatt gtccaaagcg      3780
     caacgtaatt attcagtttc cgaattagaa tgtcttgccg ttataaaagg aattaaaaaa      3840
     ttccgcgcgt atattgaggg ccaggatttc ttagtcataa cagaccatgc agcccttcaa      3900
     tggctgatgc ggcagaagga tttatcagga aggttagctc gatggtcaat gaagttgaga      3960
     gcgtttacgt tcactataaa acatcgtagc ggttctcaga acgtcgttgc agatacctta      4020
     tccagacaga atgacccagc catcgatgaa ttttgtcaaa atggacccat agttgacgta      4080
     gattctccac atttcaaatc cacggaatac ttggacttaa taaagacaat atctaacaat      4140
     caatcaagat ttcccgatct acaaatcagg gatggatata tttacaaaag aactactttt      4200
     gtatcagacg atataaagca agaaaatcca tggaaattat ggataccttc ggctttagta      4260
     cctgatatat tgtttcaggc tcatgatgca ccaagttcat ctcattgtgg catgagtaaa      4320
     actgtagaaa aactaaaaag atatttgttt tggccttgaa tggttacgca agtacgcaac      4380
     tatatatcca attgtgtaat ttgtcgtacc acgaaaagtc caaacacggt tctaaaaccg      4440
     ccaatgggta aaccgttaac ctcagacagg ccattccaaa aattatatat tgacctctta      4500
     ggcccatacc ctcgcacaaa aaaaggtcac ataggtttgc tgattgtcgt tgaccataac      4560
     acccgtttcc actttttgtt acctcttaag aagttcaccg ctcctaaaat ctgtgattac      4620
     ttaaaggggg ctatattcta tacgtttggc gttccagaag taatactttc tgataatggc      4680
     agtcagttta agtcaagcta tttccaagct tttcttacta gttttggcgt acagcaaaaa      4740
     cttacagcca tatattctcc acaggctaat gcgagtgaaa gacttaacag atcggtgcta      4800
     gccgctgtaa gagcttatat agggaaagat cacacaaatt gggatgataa cttagacgct      4860
     attagcggat ctttaagagc gtcgttacat agaagcacag gttcgtcacc ttacttcctg      4920
     acatttggac aaaatatgat ccttaacggc aaggactata gtctcctgcg tactctaaat      4980
     ctgttagcgg acgacactcg gttatctaaa ccggaggctt tagaactgca gagacggcaa      5040
     gctaaactga acctaaaccg agcccatgaa gaaaacgcga atagatacaa tctacgcact      5100
     cggcagatag aatttaaaaa cggcgatttc gtttacgcta gaaactttac acaaagtaac      5160
     gccgtaaaga aattcagtag taaattggca cccgtattta tcccagctaa agtttataag      5220
     aaacgtagct cctactacta cgaactagag gatgagagag gaaagaaatt aggagtattc      5280
     catttgaagg atatacaagc tagaaaacaa ggagtttctt cagataaggc ttccttgaaa      5340
     tagtctcgtt acccttatct gtggg                                            5365
//
ID   GYPSY5-LTR_AG repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY5-LTR_AG is an LTR of the GYPSY5_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY5-I_AG; GYPSY5-LTR_AG; GYPSY5_AG; Gyspy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-226
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY5_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 80-80 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY5-LTR is a long terminal repeat of GYPSY5_AG (its internal
CC   portion is deposited as GYPSY5-I_AG).
XX
SQ   Sequence 226 BP; 76 A; 47 C; 32 G; 71 T; 0 other;
     tgtagaaatt agaaattcga atttgtatat acctcacaca tacaccttga catccttaca        60
     catacacctt ttctatatgt acatcttgtt tgtgcgatca cacctaggtt taagtatctc       120
     aggcaatact gtcaaataga gatgtcattc gtgattgagc gctaaaacag aaaacacgca       180
     attcttcagc cttcagttaa ttcttccgaa attaagaaag attaca                      226
//
ID   Gypsy5-LTR_AP repbase;    DNA;    INV; 172 BP.
XX
AC   Contig832;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5AP;
KW   Gypsy5-I_AP; Gypsy5-LTR_AP.
XX
NM   Gypsy5-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-172
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 446-446 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 172 BP; 38 A; 26 C; 37 G; 71 T; 0 other;
     tgttggctac tctgtttttt gtaaagggct tgaccattca gtcatggtta gtcagtcgca        60
     gagtaccggt tgtgagctct gtttgtaaat tgtgtgttgt tcgtttatgc gtttaataaa       120
     actgttttaa taagtacaat tcgtttgtct tcgtctaaac cttttagtaa ca               172
//
ID   Gypsy5-LTR_Dmoj repbase;    DNA;    INV; 309 BP.
XX
AC   scaffold_6390;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dmoj;
KW   Gypsy5-LTR_Dmoj; Gypsy5-I_Dmoj.
XX
NM   Gypsy5-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-309
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1053-1053 (2009).
XX
DR   Genome; scaffold_6390; Positions   57297   56989.
XX
SQ   Sequence 309 BP; 93 A; 58 C; 64 G; 94 T; 0 other;
     tgtcgtgccc tcacaatatt atgaatatcg tgccatcact attataagca ttgtgtcatc        60
     tctatatttt aagattaaga gcgtaaagag gaaagaataa aatgtacttc gcaataacgc       120
     ttaatgttgt atgtgtgtct atgcgacggc cgttgtttca attccattcg ttttttcacc       180
     gatccgttat cctaacctgg cagacgtttc tgtctgacgc agtctgggcc cgacagtaag       240
     ttagagcgag ataagaataa caattgcaat acatgtgagc gagaatgtgt gagtacacaa       300
     aaattagca                                                               309
//
ID   Gypsy5-LTR_Dpse repbase;    DNA;    INV; 1223 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dpse;
KW   Gypsy5-I_Dpse; Gypsy5-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1223
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1054-1054 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   32939   34161.
XX
SQ   Sequence 1223 BP; 375 A; 317 C; 269 G; 262 T; 0 other;
     tgcgcttgtt gtaagaaaaa aattggttgc atcgacgtct taattttccc taaaattagg        60
     ctacgcgaat gggctaagtc ttctgttggg tccaagaaag ctaagctttt aacacgccat       120
     ctactggggg cgcttcgtca ccgtgggcta cccatattat tttgtttggc tgacgttcta       180
     atcggcctct tcctcccact gtcattttga caaatcgaaa agaaaaaggg aagaacgagg       240
     ggatgaggcc ttgatttccg ggagaagcag ctctctctct cctcgtggta tccgaacagt       300
     acagacgtgc ttatccagat caaaaaaaaa aaaatttaat aaaaagttaa aaatcaaata       360
     aaagttcttc ggagatcagc acgatccgcc ggcctttggg aagcaagacc ccatccaccc       420
     agacgagaaa ccaatcaccg atccactgtg cagaggatgg tgcgaatttt ctgacgatcg       480
     ccccaaagcg ggccaccgta gagttgggaa gctccaccca tcgccccaac gccctccgcc       540
     aacgcggtcc accgtagagt tgggaagctc cacataaagc cccaacgcca tccaccacag       600
     cgagcccttc agcagttccc gagcatcagc gccgacagag agcggcccct cagccgtttc       660
     cgagctttag cgccgccagc agcgagacct tcgccgcccc agcgcgagcc gtcgcgaccg       720
     agagtgggcc atccagccac cgggccaagc gccgtaaaca aaagtgccaa gtgatcttcc       780
     ttgccaggaa taaccagact cgtcccagaa aaaaaaaaga ccctgaccag aatttttttt       840
     tgtcaccgtg cttcgcccta acctaaaagc caggtcatga catgtgaagg ttaaaggtgt       900
     taaataaacc ccaacggaac gggcagaact cgtgagaacc tcttgtggcc cattgggcgt       960
     ttattcccaa agatcttatg tgcgctgtta ggccgttgac ccctttgtgc atataaaacg      1020
     aaaccagctg cttggagctt tttccgtgcg ccaacacctt ggtctatgga tcaagaccta      1080
     cctcaaagaa actaaataaa cgaataaata ttgaataaag tataaaatat agaagttaaa      1140
     gatggaataa tttgatttag gaactatata tgctcaaaaa aaaaaaagcc ctaaacaaaa      1200
     agaaaaagaa agaaagaaga tca                                              1223
//
ID   Gypsy5-LTR_Dya repbase;    DNA;    INV; 1854 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5_Dya;
KW   Gypsy5-I_Dya; Gypsy5-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1854
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1055-1055 (2009).
XX
DR   Genome; chrU; Positions 1910961 1912814.
XX
SQ   Sequence 1854 BP; 612 A; 344 C; 341 G; 557 T; 0 other;
     tgtagtgacc aactcaaact ttacactgca acaactcttc aagacaccct cgccctaaat        60
     tatagcagct tttgataacc gaaaaagtga gagaattgtc ttagaccaat cagaacagaa       120
     tatgatcgta cgattgtaca gctagggaat ggaaagccta tagcagtggc caccgacatg       180
     cagcttccca gagcttaatt cattatcaga taaaacctct tggcgaacgc tcataatttt       240
     tgtcgctgcc caataaaaca tcatatacac gtggagatat aatttaatta tatatatcca       300
     atacaataaa aacaagagtg ggatattcaa ataaatttcc gtgtgtgatt tgtgtgaaag       360
     tggaaaaggt aaaaagtgcg atatagtgag ttcccatttc taacccagtt tttataggga       420
     ttcgacccca aggcgtaagg aaggccaagg cctatataag ggcataaatt tgctctacag       480
     ccgacttcct ccccccgtct cgtcgacccc cgcatcagct cattatttaa acccagttcg       540
     cttcaagaag aggccaaagg tcgacataac cttcatccca aaagttacgc aaccggccac       600
     ctgccgaatg gtaactggcc aatatattgg aaggctagag ctcatccaga ttattcagct       660
     gtgcagaagt ttagacgggc ggatcggatt taattatatt tggacatcat caacgtacgc       720
     agttaggatc accatatgac cagcggaggt ctaacttagt ggttccgtct tatcgcagcg       780
     cagcgtagct gccagccgtc ttatcgctgc agcgctgcag ttgcatttcg gtgttttgtt       840
     ttgattcttg attttctttt gtattgcaat taataatgaa ttaaatactc gcagattgac       900
     ggaacttttg gcatttaaat aggaatttaa attagcacct ttaaaatttg acctacagct       960
     cgacaatgtc aacgtgaact tgggcccaac tttacgcaca tcatggagtg aatatttaag      1020
     gtcgtgagta ctaaaaaaca acaatgataa aaaccaattt tatgaaatac ctatattaaa      1080
     attctacaaa atgccactcg aacgtctaat taaaataaaa tctgcatttg gctaaagatt      1140
     atataatata tttactaatt ttataaccat ttcttatatc tatttactta tactttactt      1200
     tatatactta tttttactca ctaaatataa acgaaaatga agagttagag aatgactagg      1260
     ataattatac gtaggttaaa atttggtagt ttgtaaaaga gatttaatgg aacagcttac      1320
     tgaaatgaat ttatataaat ggaattatga ttgaaaatat attggaaaag aatgaattgt      1380
     gaataaatag atttaatggt ttgtcgagta cttatgttga acactttctt aaatatgtgg      1440
     tagagttgat ttgaacttgg ccaagggaca atgtaaatat tttaagtagc attgtcatgg      1500
     tagggagggt aaagacttag ggaattatta acatccaaat tcccaatact tatcagaatc      1560
     tgtagcttat cttcacacgt gtcggcgtgt atccgtaata tcaatataaa gccatttctt      1620
     ttattaatca attgtccagt tttgaatatt gttttgaata agacgcactt attaaatgta      1680
     gtagcgtttc gtgctatcct aagctaaaag aaccccgacc tacggcgagc tagacccgag      1740
     catagcaaga gtgcgcatcc ctagcgaagg aagtacaagg tcctctttat tagtagttgt      1800
     cacccactat taaaagacca gctagttaaa atctgtcgaa ctacgtacac taca            1854
//
ID   Gypsy5-NVi_I repbase;    DNA;    INV; 10634 BP.
XX
AC   AAZX01005749;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5-NVi;
KW   Gypsy5-NVi_I; Gypsy5-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10634
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1135-1135 (2007).
XX
DR   Genome; AAZX01005749; Positions   21716   11083.
XX
CC   Positions [6845-7282] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1629..3152
FT                 /product="Gypsy5-NVi_I_3p"
FT                 /translation="MSDKRVTRNQSKNDPELQKEIDKFRQFRQVEDEDLGN
FT                 ESELSDTFNSATSHNSTLNTDIFDESENNTTGEKTVVDQVTLDNSTNSVEN
FT                 KDNMSTAGTNISLKDALKVVPEFSGDLSELSNFLEGCQEAKDMIPTTAEEN
FT                 LTKVLRGKLIGEARKAILGEKFKKVDELTNYIRDIYLPAKTVHQLQGELGS
FT                 SYQKENESVIVFANRMRDLGTRILEAKRVATNAEVTEEFKKATTDNIIECF
FT                 KNGLKPEIERKMIVADTVLDIVKNAITAERLLNAQNALRGINKSESSKLTE
FT                 KKSVYFCKICRNNEHDTQNCNKKSNDICSICNRVGHPTSKCRFGNNSNEAC
FT                 QLCGVAGHQAKQCTGGKLNIICQICGIRGHGANTCRTIRNSVQCQLCGISG
FT                 HKANTCNRLNNQSSVLNQEQMINRSKLHCDKCNRNGHTAARCYAKTVAYVS
FT                 NENNGNQFVCFYCKQPGHFIRECPVKRSENSRVLQNTGAIPKSQSQEQRQR
FT                 ENSPDLSELVPI"
FT   CDS           3029..5212
FT                 /product="Gypsy5-NVi_I_1p"
FT                 /translation="MPSKKVGKLQGSSEHRRNSEEPKPRAASEGEFARFIG
FT                 ASTNINKNAGIPYIELGDKNKTFNIKFMIDTGAQSNIIKISSVPNTVEVDT
FT                 TTNFNLKGISDKPVESLGVIEMKVIGSSTRFFVVDDDFQIPYNGILGCEFL
FT                 YKNYCKVNFDSKTLEVNGNSIKFKQDNEINKLNKFVNYEVSNADIKLPFID
FT                 VLNSPTQEITQFLLDTGAEYSLIKKTLVPDYCKIDNEDKMFLRGIDGEIIK
FT                 TEGSTIIDIFGIEHRIQVVPDDIPIPAEGVIGVDYLSKHDTTLNFKTKSLR
FT                 VHDKYSPFKDRKFINLTINNKMPINEEDFDLESEEENVVDSMYNNYSVHDE
FT                 KNKYYSNEFSNMGQIYSFCVSKEETFNELEIKQNADILESRLCNIFNALRE
FT                 EHGIEPVEQPSIHPEILDARADEVMGILRLDGLTEEEVEQIDALIRKHADR
FT                 IQLQGEDLEATNVLTHRINTTDDIPIYVRQYRLPHSLKEEIETQIKELLRK
FT                 RIIQHSNSAYNSSIWVVPKKPDSTGKIRWRIVLDFRELNEKTVPDKYPIPN
FT                 IADIFDQVGGAKYFTILDCVSGFHQIMLDPKDRHKTAFSTPLGHFEYLRMP
FT                 FGLKNAATEYQRLMNIVLGDLIGKGVFVYIDDIVIYAKNLEEHNRLVNEVM
FT                 NRLRKANLKLQPDKCEFLRREVVYLGHRLSEEGIQPDLGKIEAVSKFPQPI
FT                 DVKGIRQFLGLAGYYRRFIKDFAKIAKP"
FT   CDS           7727..9667
FT                 /product="Gypsy5-NVi_I_2p"
FT                 /translation="MAKLVLWGILVLPVVLGLVGYDCGSRSLNITTLSLLD
FT                 VGPCEAPQDTINVTREYVQLLQINEYSEATVIQCKLEIKRTVYYCGMHSHI
FT                 SIVNNGQSEYLYDVSRKACQELHRSGTFMFANVHVIAGVKVNRTVTHSMQF
FT                 TGFVNSEGTCNGGAYSDPYGTWENVVVQGVMQISLKEYSAKININNNKIFL
FT                 KSGTVCNLSEESCIDVEGGYTFWSAIPRDNCKFDRYGVLYEGFANKMIDSE
FT                 YNKEQIIYSLATNDITFALTSKSKDYLCGYTIIRTEHPKLVIFETVKGQTF
FT                 ATKSKISVSNLDIFAYVNSKFVFVEKHMRHQIKQLYRDVVVQRCNIERQTL
FT                 KNALAIATQAPDEFAYHLMKGPGYMALVAGEVVHVIKCIPVEVKVKHGDNC
FT                 YSELEVTKGNRTMYLTPRTHILKLRGTQISCNHLLPAYYSIEGTWYKILPK
FT                 PTDTKDPITIQPNSKSSWEYKSPESLATSGIYTEKDLDELRERIMFPVEKP
FT                 ALLNDIAREMRGHIVTDKEGTLIKLLNADAVEKIIASTWDRIWMKFLTFGT
FT                 VSAGVIGIFLIFHLIKTIIDIGIQGYTLHAIYGWSIHLLGAVWGSITYLLL
FT                 HLNKTDTDQKQDENQDIELQEPLNQEPSTSQQINQVDDKKRNEGFFSRC"
XX
SQ   Sequence 10634 BP; 4273 A; 1285 C; 2064 G; 3012 T; 0 other;
     ggataaaatc agggaacgtc tccatcccga gttcagcgga agctgactca aaacggagga        60
     atattttata gtgcgccgag catcggacgt aacaaatttt gggggttcag ccgggatcat       120
     aacgtttcta aattttattt tgataaaacg cgttgagttt attcgatttt attcggtttt       180
     tagtgttggt gatttctata tggtcttaag tgaaattttt ataaaggcaa agtttttgaa       240
     aagtttattt gaaattaaaa tacgtgaaat ttagtttgaa gattttgtga gaaaatttta       300
     tgaaaaataa taatagtttt tgaaatttta tgtgaacaaa aataagaaaa tttgaagttg       360
     atttgtttga attgagaaga aaaagtatga aggttatatt gtcagtttaa aagaaagaaa       420
     aacgtgaata ttgaaaaatg agttttaaat gaattttata agggaaacta gtgttgaaaa       480
     atataaataa agtgaaagtt agttaaagaa taactaagga ataaaataaa aggaaatttt       540
     ggaaatttat atgggaaatt atatgtgaat atttgtagaa gtaaacaaat acaaagaaat       600
     tataaaagtt ataaatcgga cagagtaacc gtgaaaaact taagaaatat tgaaaaatta       660
     ataaaaattg tgttaaataa agaaattaca ttgatgtttt gaatatgaaa cgttgatagg       720
     aatatgaaat tgaagtaatt ttatttgcaa tttaagagaa attgcgtgaa attttatgat       780
     acaaaaaaaa agcagttttg aaaaagtgat tattgaaaaa aagtgttatt tatgatataa       840
     aatttgaaaa gtagatattg ggttaaaatt aaagtgaaat ttgaataatt gaattataaa       900
     gttttgaatt ttgaaaaatt tgaatgttga ataaaaaggt tttatgcaac aaatgttaat       960
     aaataataaa ataaataaat aaattgagaa tagattttca aaaagattta aaacgagtaa      1020
     aaacattata tgtttgtgaa caaaaattta tatttaatgt cagtaaggca aaagaaaatt      1080
     ttagataaaa gttaaaatca gtttatgaaa aatagtaagg ttttattatt gttttaattt      1140
     gttttagtgg gcaataaaaa gtcacctaag caacggaaaa ggttagctaa gaaaaagtta      1200
     gaagaaaatt taaatcaagt aagtcaatcg gacacattca aaagaatcaa acagtcaaaa      1260
     agtaaaagga ggaaaattaa gattcaggaa aagttgatag aaaaagatta tgtggataat      1320
     ttatgtttta ttaggcagtt aaagaacaaa ttagcaatag tgcgatattt ggatgttatt      1380
     aaatctccaa ttaaaaaggt aaaatcaaga agaatcgaca tgagtaaatg tgataaagtt      1440
     agaaaaaatt tgtttattaa agaaaatgat agagattgcg ataaatgtat aaatttaaaa      1500
     attcgtgata aatgtttaga atgttttata ggtagaaata atttgccacg agcagtttta      1560
     gttgaattga atttgaggaa aaccgttatc taaaaatatt aaaggcaatt tgaaaattaa      1620
     acgtttacat gagtgataaa cgggtcacac ggaaccaatc aaaaaacgat ccagagttac      1680
     aaaaagagat agataaattc agacaattta gacaagtaga agacgaagat cttggaaacg      1740
     aatcagaact atcagatact tttaattctg cgacatcaca caatagcact ttgaacacag      1800
     acatttttga cgaatcagaa aataacacga ctggggaaaa aacggtagta gaccaagtta      1860
     ctttagacaa tagcacaaat tcagtagaaa acaaagacaa catgtcgaca gcagggacta      1920
     acattagttt aaaagacgcg cttaaagtag tgccggagtt tagcggagat ttgtcggaat      1980
     tatccaattt tttagaagga tgccaggagg caaaggatat gattccaacc actgcggagg      2040
     aaaatcttac gaaagttctg agaggtaaac ttataggcga agctagaaaa gccatattag      2100
     gagaaaagtt taaaaaagta gatgagttaa ctaattatat tcgcgacata tatttacctg      2160
     ctaaaaccgt gcatcagtta cagggagagt taggtagttc gtatcaaaag gagaatgaga      2220
     gtgttatagt atttgctaat agaatgagag atttgggaac aagaatatta gaagctaagc      2280
     gagtcgccac gaacgcggag gtaactgagg aatttaaaaa agcgacaacg gacaacataa      2340
     ttgaatgttt taaaaacgga ttaaaaccgg aaatagagag aaaaatgatt gtggccgaca      2400
     cagtattaga cattgtaaaa aatgcgatta cagcggagag acttttaaat gcacaaaatg      2460
     ccttgcgtgg aataaataaa agcgaaagta gtaaattaac tgagaagaaa agtgtatatt      2520
     tttgtaaaat ttgtagaaat aatgaacacg atactcaaaa ttgtaataaa aagagtaatg      2580
     atatttgtag tatttgtaat cgcgtgggac atccgactag caagtgtaga ttcggaaata      2640
     atagtaatga ggcgtgccaa ttatgcggag ttgccggaca tcaggctaag caatgcacag      2700
     ggggaaaatt aaatatcata tgtcaaattt gcggaattag gggtcatggc gctaatactt      2760
     gtagaacaat aagaaatagt gttcaatgtc agttatgtgg aatttcgggg cataaggcaa      2820
     atacgtgcaa taggttaaat aatcagagca gtgtcctaaa tcaagaacaa atgataaata      2880
     gatcgaaatt acattgcgac aaatgcaatc gcaatggaca cacggcagct aggtgctatg      2940
     caaaaactgt agcgtacgtt agtaatgaga ataatggcaa tcaatttgtg tgtttttatt      3000
     gtaaacaacc gggacatttt attagggaat gcccagtaaa aaggtcggaa aactccaggg      3060
     ttcttcagaa cacaggcgca attccgaaga gccaaagcca agagcagcgt cagagggaga      3120
     attcgccaga tttatcggag ctagtaccaa tataaataaa aatgcaggaa taccgtatat      3180
     agaattagga gacaaaaata aaacattcaa tattaaattt atgatagata caggggctca      3240
     aagtaatatt attaaaatta gctcagttcc aaatacagta gaggttgata caacaacaaa      3300
     ttttaattta aagggaattt ctgacaaacc agtagagagt ttaggagtaa ttgagatgaa      3360
     agttataggt agtagtacta gattttttgt agttgatgac gattttcaga taccgtataa      3420
     tggaatttta ggctgtgaat ttttatacaa aaattattgt aaagtaaatt ttgatagtaa      3480
     aactttagaa gtaaacggaa attcaattaa attcaaacag gataatgaaa taaataaact      3540
     aaataaattc gtaaattatg aagtttcaaa tgcagatatt aaattacctt ttatagatgt      3600
     gttaaattct ccaacgcaag agatcacaca atttttacta gatacaggag cagaatatag      3660
     tttaataaaa aaaactttag taccagatta ttgtaaaatt gataacgaag ataaaatgtt      3720
     tttgagaggt atagatggcg aaataataaa aactgaagga tcaactataa tagatatttt      3780
     tggaattgaa catagaatac aagtcgtacc ggatgacatt cctataccag ctgagggagt      3840
     aataggagtc gattatttaa gtaaacatga cacaactttg aattttaaaa ccaaaagttt      3900
     aagagtacat gataaatatt caccatttaa agatagaaaa tttataaatt taacaataaa      3960
     taataaaatg ccaattaacg aggaagattt tgatttagag tcagaggaag aaaatgttgt      4020
     cgattcaatg tacaataatt attcggttca tgacgagaaa aataaatatt attcaaacga      4080
     attttcaaac atgggacaaa tttatagttt ttgtgtttca aaggaagaaa cttttaacga      4140
     acttgaaata aaacaaaacg cagatatttt agaaagtaga ttatgtaata tttttaatgc      4200
     acttagagag gagcacggaa tagagccagt ggaacagcca agtatacatc cagaaatttt      4260
     agatgctaga gcagatgagg taatgggaat tttaaggtta gatgggctta cagaagaaga      4320
     ggtagagcag atagacgctt tgattagaaa acatgctgat agaattcaat tacaagggga      4380
     agatttagaa gctactaatg ttttgacgca tagaattaat actaccgatg atataccaat      4440
     ttacgttaga caatataggt taccgcattc attaaaagaa gagatagaga cacagattaa      4500
     agagttatta agaaaaagga ttattcaaca ttcaaattca gcatataata gttcaatttg      4560
     ggtagtacca aaaaaaccag attcgacagg aaaaatacga tggagaatag ttttagattt      4620
     tagagaatta aatgaaaaga cagtaccgga taaatatcct attcctaata tagctgatat      4680
     ttttgatcaa gtgggagggg cgaaatattt tactatttta gattgcgtat caggttttca      4740
     tcaaataatg ttagatccga aagatagaca taagacagct ttttcaacac ctttaggaca      4800
     ctttgaatat ttaagaatgc cgtttggatt aaagaacgct gcgacggagt atcagagatt      4860
     aatgaatata gttttaggcg atttaattgg taaaggggtt tttgtatata ttgatgatat      4920
     tgtaatctac gcgaaaaatt tagaagagca taataggtta gttaatgaag taatgaatcg      4980
     attaagaaaa gctaatttaa aactacagcc ggataagtgt gaatttttaa gacgagaagt      5040
     agtatattta ggacataggt taagtgaaga agggattcaa cctgatttag gtaagattga      5100
     agcggtttcg aagtttccac agccaataga tgttaaggga attaggcaat ttttaggttt      5160
     agctggctat tatagaaggt ttatcaagga ttttgcaaag atagcaaaac cttagacaaa      5220
     actgttagaa aaagaaacag aatttgactg gaatacagaa tgcgaggaat cgtttgtaaa      5280
     acttaaagag atattgtgca atgcaccatt gttgcaatat ccagacttca caaaaccatt      5340
     tttaataacg actgatgcat cgggatatgc tttgggaggg attttatctc aagggactat      5400
     tggaaaggac cggcccatag catacacctc gagagtattg agaggcgcgg agttacaata      5460
     tgacgtgtac gaaaaagagg cactcgccat gatacatagt gttaaaacgt ttagacctta      5520
     tgtatttgga cgccgattta caataatcac agatcacaag cctttattat ggttcaaatc      5580
     tgctgattta aacactcggg ttcaaaaatg gcgatttaaa ttatctgagt acgactacac      5640
     gatcgagtat aaaccaggca agcaaaactg taacgcagat gctttgtcta ggaatcccgt      5700
     ggagttaaac gttgtgacaa gagcaagggc taaaataaat aaagacttaa ctgaacaaga      5760
     caaaaatgaa gtaacaaaaa ttcgaaaacc aaatgttaag agattagtga aaagtaaaaa      5820
     ccggaaagta actaaaaaaa taaatcaagg gccacttaaa gatcggtacc caaagagaaa      5880
     tagaaataaa attaattacg aagagagtga ggagagtgac ggtgatattg aagctgaagt      5940
     agaaaattta cctaaattaa ataaaataaa accaaaacct ttaaaataag ctaatgataa      6000
     agatgaggat agtttatcgt cgtcctcaga cgaagacatt tttaatgata ataatgacaa      6060
     tttagacaac aaggaaattt taaataataa taatgatgat attttaaata atgataattc      6120
     agatgacgaa gttgaaacaa aatcacaaga tgaagttcat agttcaaaaa ttgtttatag      6180
     taaagaattg attcagtata gaaaaagtaa tgtagcctat tttatagata gtgctggaaa      6240
     accttgtgat tttggtgcga cagagttgat taaatttaaa aaaaatagat ccaaatacaa      6300
     tattagaact aaatgaagtt aaaagcaata aaagatcaaa caataaatat tattttccta      6360
     tgtgcattaa aaatgaaaaa ccagagtcaa tatcacaaat taaaataaat atcgaaacag      6420
     tgttaattga attaaaagaa aatttagaaa aattaaatca gaaagattgt agttttgcaa      6480
     aaagtaaaga aatagaaaaa ttagagtgga atgagatttt aaatttaatt agtaaagttt      6540
     ttgaggattc taatattaaa ataattattt gtaaaggaac tttaaagtat gtaccagtag      6600
     aaaaaagaga cttgatattt aacgaattac atacatcagc gataggaggg catagaggtg      6660
     tttcaaaaac ttataagcga attaaagaaa attattattg ggaaaattta aaggaagata      6720
     tacagaaaag aattcaaatg tgtttagatt gtcagttaaa aaaattagtt agattaaata      6780
     ccaaacaacc aatgataatt acagatacgc cgggaacaac ttttgttaaa atagcaatgg      6840
     ataagtagga cctttaccga aaactaaaaa cgggaatgag tatattttaa ctttacaaga      6900
     tcagctctca aaattttgta tagcaatacc tataaaagac acttatgcag ctactattgc      6960
     ggatgtattt gtaaagaaag taatatgtat ttttggagca ccgcgagtag ttttaactga      7020
     tcagggaagc aactttttaa gtaagctaat gacaagagtg gcaaaacgat ttaaaataaa      7080
     gaaagttaga actactgctt ttcatccaca atcgaacggg tcattagaac gttcacatca      7140
     tgcgttgagc gagtttttaa agcaatatgc tgacggtgat gatgattggg atgaatgggt      7200
     tgatgtagca actttaaact ataataccgg aattcacgaa gggacaaaac acactccatt      7260
     tgaagtagtt tttggtcgac tagcaaggat tccttctagc gagccactac gagaaggtga      7320
     tgtgtgtcca acatataaag gatatatcat agatttagta agtaggttac atgaaattag      7380
     aaaattagtt cacgataatt tagtagatgc aaaaataaaa tcaaaaaaat attatgataa      7440
     tcatattaac cctaagaatt ttaatgtagg agatttcgta ttcttaaaat caggacataa      7500
     gccaaaaaaa ttaaaaaatc actattccgg accatataga atcatggaaa ttttaaacaa      7560
     aaataacgtt cgtataaaaa cagaaaaggg agacaaaata gttcacatca atcgattaag      7620
     aatttttaaa attaaaattc aggcaaaaag gaaaaaacca ttactacacc gagatagtga      7680
     ttaataaatt ttgatttttt ttttgattac agaataatac ctaaatatgg cgaaattagt      7740
     cttatgggga atcttagtct tgccagtagt tttaggatta gtaggttatg attgcggatc      7800
     ccgatcgcta aatataacaa cattatcttt actagatgta gggccatgcg aagcgccaca      7860
     agatacgatt aatgtaacgc gcgagtacgt acagttgctg cagataaatg agtattctga      7920
     agcaactgta atacaatgta aattagaaat taagagaacg gtatattatt gcggaatgca      7980
     ttcacacatt tcaattgtta ataacgggca aagcgagtat ctatatgatg taagtagaaa      8040
     agcatgtcaa gaattgcata gatcaggcac atttatgttc gcaaacgttc atgtaatagc      8100
     aggcgtaaaa gtcaatagaa cagtcacaca cagtatgcaa ttcacaggtt ttgtaaatag      8160
     tgagggaacg tgcaacggag gtgcgtattc tgatccttac ggaacttggg aaaatgtagt      8220
     cgttcaggga gtaatgcaaa ttagtttaaa agaatattca gcaaaaatta atatcaataa      8280
     taacaaaata tttttaaaat cagggacagt ttgtaatctt tcggaagaga gttgcattga      8340
     tgttgaaggc ggatacactt tttggagcgc aataccaaga gataattgca aattcgatcg      8400
     gtacggagta ttatatgaag gttttgcgaa taaaatgata gattcagaat ataataagga      8460
     acaaattata tattcacttg cgacaaatga tataactttt gcgttaacta gtaaaagtaa      8520
     agactattta tgcggttata ctattatcag aacagaacat cccaaattag taatttttga      8580
     aacagttaaa ggacagacat ttgcgactaa aagtaaaatt tcagtttcaa acttagatat      8640
     ttttgcgtat gtaaattcaa aatttgtatt tgtagaaaaa catatgagac atcaaattaa      8700
     gcaattatat agagacgtcg ttgtacagcg gtgtaatata gagcgacaga ccttaaagaa      8760
     tgcgttggca atagctacac aggcacctga tgagtttgct tatcacttga tgaagggtcc      8820
     aggatatatg gcgttagtag caggagaagt agtacacgta ataaaatgca taccagtaga      8880
     agtgaaagta aagcacggcg acaattgtta ttcagaatta gaagtcacaa aaggaaatag      8940
     aactatgtat ctcacaccga gaactcatat tttaaaatta agaggtacgc agatttcatg      9000
     caaccatctt ttaccagcat actactcaat agaaggaacc tggtataaaa tactgccaaa      9060
     accaacagat acaaaagatc caattaccat tcaaccaaat tcaaaaagta gctgggagta      9120
     caaaagtcca gaatccttag caacatctgg catttacaca gaaaaagatt tagacgaact      9180
     gagagaaaga atcatgtttc cagtcgaaaa accagcctta ctcaacgata ttgctcgaga      9240
     gatgcgcgga cacattgtga cagataaaga aggcacatta attaagttac ttaatgcaga      9300
     tgcagtagaa aagataattg catcaacttg ggacaggatc tggatgaagt tcctaacgtt      9360
     cgggacagta agtgcaggag tgattggaat atttttaata tttcatttaa taaaaacaat      9420
     aattgacatc ggcatccaag gatatacatt gcatgcaata tacggatggt ccatacatct      9480
     gttaggtgca gtttggggat caataactta cttattatta catttaaata aaaccgatac      9540
     ggatcaaaag caggacgaaa accaagacat agaattgcaa gaaccattga atcaagagcc      9600
     atcaacatct caacaaataa atcaagtaga cgacaagaag agaaacgagg gatttttctc      9660
     aaggtgttag taaactcatg ggagtactgt ggagttaaaa ggtctgcgta ataaattaca      9720
     acgcaattca tataatttta ttcttcagtt atagattaag taaaaattat atttaagatt      9780
     tctaattaat atatctctat ttttcattac tcaggagagt aataattact atggtctttc      9840
     agaccctagt aatagtttaa gggtgggggt gttacgtcat agcctaattt aaaaaaaaaa      9900
     caaaaaaaat attaaataaa ataaagtgtg cgcagctgcg cgcatttcaa aaaaaaatgt      9960
     gtttgtgttt accgtagata agcgagcgtc cggacagcgc agttagacag tccgaggcca     10020
     ttaagagcga gcgtgggcat agcgattggg atcggtgcgg cgggcagcgg ccctaccata     10080
     aaatttgtgc gcagctggga aaaacccaga aattttgttt actatgctta tgttacgccg     10140
     tagaacacga agccgtggat aaaattttta tttttgaagt agaatattta tattaaataa     10200
     tgtagaagat ttaaattcat gtaaagtatg gacagctgaa aatactaagc tacagctgtg     10260
     catattttat ttagttcaag agtaagagca cgtgttcgcg gagtaaaact taaaataata     10320
     ctcgtacaaa ttttatgatt agtttttagt ttaatagtta catagattta ttatgttaga     10380
     taaaaagttg gcgaccacgg cgtaaaatga ttatttatcc gtgcagattt tacgatttga     10440
     tttcaattaa aaaatgaatg ttataaaaaa ttagttaaaa atagcaggca gaatattata     10500
     atgatactat tattacaaaa tatgaatttt acaaacatat tataaataac gcgtagaaaa     10560
     attgaaaacg gtacagagag ggccatctaa cgaaaaatcg gcaaggctaa gagtagtgtg     10620
     ggagggacaa aggg                                                       10634
//
ID   Gypsy5-NVi_LTR repbase;    DNA;    INV; 580 BP.
XX
AC   AAZX01005749;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5-NVi;
KW   Gypsy5-NVi_I; Gypsy5-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-580
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1136-1136 (2007).
XX
DR   Genome; AAZX01005749; Positions   11082   10503.
XX
SQ   Sequence 580 BP; 199 A; 78 C; 144 G; 159 T; 0 other;
     tgcgaaagag gaccggaaga ggcgggaacc aagcggaagg acgcgatgct ataggtcgat        60
     gaccgatata gagggcgctg acgcagaccc aaagggatgg gcctgttgga aaaatcgggt       120
     aggaaaggga aaaggacgcg agggtgaaac gaggaaaagc gtgcggagga cttttttttt       180
     gtaaaataac tttaagtttt caaataaatt tagtatttca aagtaaataa cgtgaagtgt       240
     aaacaattta atttttcgag tatatttaaa tacctataaa ttctacaaac tacacaagaa       300
     ggaagaagtt tactatccag taaactttga tttcacttca acagcaaaaa tgtaagtaaa       360
     atattaataa atgaaattat aatttacaag ggtggaaaat tgtatgtgag taggtttttg       420
     aacgctgccg ctcatataca aaatttaggg tgaacttgtg tgattgactg gagggttgac       480
     tggacttcgc atgtcggagg ccttttgacc tacagttcaa tcaaacttgt tcgtttgtga       540
     gggttgggat ataaagttta gttgaaatac gcgttaatca                             580
//
ID   GYPSY52-I_AG repbase;    DNA;    INV; 5341 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY52-I_AG is an internal portion of retrotransposon GYPSY52_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; CsRn1 lineage; GYPSY52-I_AG; GYPSY52-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY52_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5341
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY52_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 96-96 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY52_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the CsRn1
CC   lineage of other organisms.
CC   GYPSY48_AG, GYPSY49_AG, GYPSY50_AG, GYPSY51_AG and GYPSY53_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY52-I_AG consensus was reconstructed after multiple
CC   alignment of 7-8 copies.
CC   The consensus encodes the 327-aa GYPSY52_AG1p gag-like
CC   polyprotein (pos. 922-1902) and the 1137?aa GYPSY52_AG2p
CC   pol-like polyprotein (pos. 1906-5316).
CC   The sequence of the LTRs flanking GYPSY52-I_AG is deposited as
CC   GYPSY52-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1906..5316
FT                 /product="GYPSY52_AG2p"
FT                 /translation="RNAGDVQLLVDSISSASHRLIIKDYKTNQPFLIDTGA
FT                 DVSVIPRQHSSVPCKPSTMKLFAANSTPIQVYGESLYTLDLGLRRAFLWNF
FT                 VIADVGTAIIGADFLQHFHLLVDLRDKCLVDALTNLRTPGVPDPHPGEPTV
FT                 KVCDSTSPIATLLREFPGLTARTAPGTLLQSDVTHRIETTGQPTFARPRRL
FT                 SPEKYAAARAEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRAL
FT                 NAKTIPDRYPLPFLQDFTMHLQGKTIFSKVDLHKAYHQIPIHPEDIPKTAI
FT                 TTPFGLFEFTTMPFGLRNAAQTFQRLIHDVLRGLDFVFPYIDDMIVASSSE
FT                 EEHHEHLRQLFQRLEQHHLAINPAKCEFNRSEIAFLGHLVNAEGIRPLPER
FT                 VRAISELSKPATIMELKKFLAMINYYRRFLPHALTTQSILLEMTPGNKKKD
FT                 KTPLKWTPESSEAFDRCKEQLQQAALLAHPALNAELSLWTDASDFAAGAVL
FT                 HQRIDGQLQPLGFFSKKFEKAQLNYSTYDRELTAIYLAVRHFRYQLEGREF
FT                 CIYTDHKPLTFAFRQTLDSSSPRRARQLDFIGQFSTDIRHVSGEENITADL
FT                 LSRIEIVNASPAIDFERLAEEQTNDPELADILSGKTRTDLFLQKTPIPGST
FT                 QSLYADCPGGIIRPYITRSFRNQLLHAVHDLSHPGARATAKLMTERFVWLD
FT                 IKRDAQEFARNCLACQRAKIGRHTKSPLVPYPATQDRFSHINIDIIGPFPI
FT                 SNGNRYCLTIIDRYTRWPEAIPIPDITATTVVSALLYHWIARFGVPSHVTT
FT                 DQGRQFESALFKELTRALGTKHIRTTAYHPQANGLIERWHRTLKAAICCKD
FT                 TSKWSEHLPLILLGLRTTFKNDINASPAELVYGTTLTIPAEFLIEKPQPAM
FT                 VNQSDFAKTLREAMSKIRPSNTAWHTNRTSFVHSDLNKCSHVFVRNDTVRP
FT                 ALTTPYHGPYQVLTRNSKSFQILLNEHPSLVSVDRIKPACTTEGIISSAPQ
FT                 QPSPDQLLTSQGYATPVAQPPSTQQSTMSQRLTTPMPGPSTLDQLPSYNQS
FT                 SLPDQQPTATQSPSTIQLPSTNQPPMSRNRATRTSPMPSLQPARATTSFAP
FT                 PPPILRKDQNVSTGVTRSQRRVVIPLRYR"
FT   CDS           922..1902
FT                 /product="GYPSY52_AG1p"
FT                 /translation="MQRSPQQGAAPVASPAVAISPAVAASPAVVASPAAGL
FT                 PTPSPYLIDITPLARDASTDLPEFQVETVNAMRLKPPELDTADIHTFFYAL
FT                 ENWFDAWNISPHHHVRRFNILKTQIPTRIPPELRPILDSVPSTDRYESAKK
FT                 AIIQHFEESQRSRLHRLLSEMSLGDRKPSQLLAEMRRTANGAMTDSMLIDL
FT                 WIGRLPPYVQSAVIASSQNADEKVKVADSVVDSFALYNRSGPYQTIAEVRN
FT                 EEVNRLSRQVAELSQRLETLMNQNQARERSRARSRSRNRNTNQATNPNTNG
FT                 YCFYHDRYGQQARNCRAPCSFNSRPQNNGTPTTSA"
XX
SQ   Sequence 5341 BP; 1383 A; 1681 C; 1197 G; 1080 T; 0 other;
     actggtgacc ccgacgtgat ccgcaaccga cgccgcgaat tcgtacgtga gtgtgtgtgt        60
     gtactacgca tcgcaaactt gtaccgcgtt gaacgtgtta aaacgtgcca ccggcatcgg       120
     agatcgacgc agagaagaca acgcgtgtgt gtgtgtgcct acgaccggga gtgctaccag       180
     cgttagaggt accggcaacg cggctggcct cctcccccct ttccctgtaa agtgcgcaac       240
     gagcgccctt tcatcattca caggacgttg agtgcgggcc gacgaaaaaa cgcagcaacg       300
     ccgtgttagt gcgcccgtag ctacacggag cgttcctgca ttcagcgaac aaaagaaccc       360
     cccgcacaca cgcgcgccgc ctcgaagcga gacaagcgca cacacaccat catcggcgca       420
     gcagaaaatt tccatcgagc tttcgacggc tgacgcaatc gacgcaattc ctggaagcgg       480
     atcgacgaca atctccgctg gtggtctcct cgacgccgat caccgcctcg caagctgttt       540
     ctacacctcg tgctactggg aattttccgt ttgtgtgtgc ttccatctac gggtgcgatc       600
     aagaaggaag acaccaacgt cgagttgcgc acgcaaatta tccagccgta gcagtagtga       660
     cacatcgccg ccatcacgat tttttcgctc gaaggcgaac ccgcttggat ccagctgaca       720
     agaagaacga cgccgccatt ttctgtgcac catttcatcg caagtgagga aacgccattt       780
     tctccacccg agaaggaaga cgacgcacgc tgcttctgaa gcgttttcat accgatcgac       840
     cgcaacgacg acaccctggt tacgtgaaca attaaggtaa gatccaccct ttttattcac       900
     tactaacccc gacgcggaaa gatgcagcgt agcccgcaac aaggtgcagc gccggtcgcc       960
     agccctgcag ttgccatcag ccctgcagtg gccgccagtc ctgcggtggt cgccagcccc      1020
     gcagctggac tccccacacc gagtccatac ttaatcgata taacccctct cgctcgtgac      1080
     gcctctaccg accttccgga gttccaagtc gagaccgtga acgccatgcg tctcaagccg      1140
     cccgaattgg atactgctga catccatacg ttcttctacg ccttggagaa ctggttcgac      1200
     gcctggaata tttctccgca ccatcatgtt agacgtttta acatcctgaa aacacagatc      1260
     cctacgcgaa ttcctcccga gttgcgtccc attctcgaca gcgtaccaag taccgaccgc      1320
     tacgaatccg cgaagaaagc catcatacaa catttcgaag agtctcagcg aagccgccta      1380
     caccgtttgc tatccgaaat gagcctcggc gaccgtaagc cttctcaact gctagccgag      1440
     atgcggcgaa cagcaaacgg tgcaatgacc gactccatgt tgatcgatct ttggatcggt      1500
     cggctgccgc cctacgttca gtccgccgta atcgcttcct ctcagaacgc cgacgagaaa      1560
     gttaaggtgg ccgattcagt ggtcgactct ttcgccttgt acaatcgctc cggtccgtac      1620
     caaaccatcg ccgaggtacg gaatgaggag gtcaaccgcc tttcacgaca ggtagccgag      1680
     ctgagtcaac gtttagaaac tctaatgaac cagaaccaag ctcgtgaacg ctcacgggcc      1740
     cgctcacgct ctcgcaatcg caacacgaac caggctacta atcctaacac taacggctat      1800
     tgtttctacc acgaccgata cggacagcaa gcgcgtaact gccgcgctcc gtgctcgttt      1860
     aacagccgtc ctcaaaataa cggtactcct actacttctg catgacggaa cgcgggagac      1920
     gtccagcttc tagtcgattc gatatcatcg gccagtcatc gccttattat caaagactat      1980
     aaaactaacc aacccttcct tatcgacacc ggcgccgacg tctccgtaat acctcgacag      2040
     cacagctccg ttccttgcaa accatcgacc atgaaactat ttgccgctaa cagtacgcct      2100
     atccaagtgt atggagagtc actctacacg ttggatcttg gtcttcgacg cgcctttctg      2160
     tggaacttcg tgatcgcaga cgtgggtacc gcaataatag gagccgattt cctccagcat      2220
     tttcaccttt tagtggacct gcgcgacaaa tgcctcgtag acgccttaac caacttacga      2280
     acgccgggtg ttcctgatcc acatcctggg gagccaaccg taaaggtgtg cgattcgacc      2340
     tcgccaatcg ccaccttgtt gagggagttc cctgggttga ctgcacggac cgcgcccgga      2400
     acgctcctgc aatccgacgt cacgcaccgc atagagacta ctggacaacc gaccttcgcc      2460
     cgtccgcgta ggttgtcccc cgaaaaatac gctgcagctc gcgccgagtt cgagtctctc      2520
     gtacagctag gagtgtgccg accatctaac agcagctggg ccagtcctct gcacatgacg      2580
     aaaaaagcag acgggacgtg gcgaccctgt ggcgactaca gggccctcaa cgcgaaaaca      2640
     attcccgacc gttacccact acctttcttg caggatttta ctatgcattt gcagggaaaa      2700
     accatctttt ctaaggttga cctgcacaag gcatatcacc aaatcccgat acatcccgaa      2760
     gatataccga agacggcgat cacaaccccc ttcggattgt tcgagttcac cacgatgccc      2820
     ttcggcctac gaaacgctgc gcagactttt cagcgactca ttcacgatgt cctccgaggt      2880
     ctcgacttcg tgttcccata catagacgat atgattgtcg cctcgtcgtc agaggaagaa      2940
     caccacgaac acctgcgcca gctgtttcag cgtctcgaac aacaccacct ggccatcaat      3000
     ccggccaaat gcgaattcaa ccgaagtgaa attgcctttc ttggccactt ggtcaacgca      3060
     gaaggaatac gtcctctccc ggaacgggta cgagcgatca gcgagttgag taaaccagcg      3120
     acgataatgg agctgaagaa attcctcgcg atgatcaatt attatcgacg cttcttgcca      3180
     catgccctga cgacacaaag catcctactt gagatgacac cggggaacaa gaagaaggac      3240
     aagacaccgc taaagtggac gcccgaatct agcgaagcat tcgaccgatg taaagagcag      3300
     ctacaacaag ccgcgctttt agctcaccct gccttaaacg cagagttgtc actctggaca      3360
     gacgcttccg acttcgccgc tggagccgtt ctccaccaac gtatcgacgg ccaactccag      3420
     cccttaggat ttttctccaa aaagtttgag aaggcacagc tcaactactc aacatacgac      3480
     cgcgagttga ccgctattta tctggctgta cgacactttc ggtatcagtt agagggtcgt      3540
     gaattctgca tctacacgga ccacaaacct ttaactttcg cttttcgcca gactcttgac      3600
     agctcctcgc cgcgtcgagc cagacaactc gacttcattg gacaattctc caccgacatt      3660
     cgccacgtat cgggagaaga aaacatcacc gccgacctac tctcacggat cgaaattgta      3720
     aacgcatcac ctgcaatcga ttttgaacgt ctcgccgaag agcaaacaaa cgaccctgag      3780
     ctcgccgata tactcagcgg taaaacacga accgaccttt tccttcaaaa aacgccgata      3840
     ccaggaagca cccaatcgct atacgccgac tgccctggtg gaataatccg accgtacatc      3900
     acaagatcat tccggaatca gcttctacac gccgtacacg accttagcca tcctggagcg      3960
     agagccactg ccaaattaat gacagagcga tttgtttggc tggacatcaa aagggacgct      4020
     caggaattcg ccagaaactg cttggcatgc caacgcgcta agataggcag acacacgaaa      4080
     agcccgctcg taccgtaccc ggcaacgcaa gacaggttca gccatataaa catcgatatc      4140
     atcgggccat ttccaattag caacggcaac cgatactgcc tcacgatcat agaccgatat      4200
     acccgctggc cggaagctat accgattcca gacatcaccg cgactacggt tgtatcagca      4260
     ctgctgtacc attggattgc acgattcgga gttccgtctc acgtgacaac cgatcaggga      4320
     cgacaattcg agtccgccct gttcaaggag ttgacgcgag ctcttggaac aaaacacatt      4380
     cgaacgaccg cgtatcaccc gcaggcaaac gggttgatcg agagatggca tcgcactctc      4440
     aaagctgcaa tttgctgtaa agatacatcg aagtggagcg agcatctccc actcatactg      4500
     ctcggattac gcactacatt caagaacgac attaatgcgt cgcctgcaga actcgtgtac      4560
     ggaacgaccc tcaccattcc cgccgaattc ctcatcgaaa aaccgcaacc ggccatggtc      4620
     aaccagtccg actttgccaa gacactccga gaagcgatga gcaaaattcg accttctaac      4680
     accgcctggc acaccaaccg aacatcgttt gtgcactccg acttgaacaa atgctcgcat      4740
     gtgtttgtgc gcaatgacac cgtccgtccc gcgttaacca caccttatca cggcccatac      4800
     caagtactta ctcgaaattc aaagtctttt cagatcctac taaacgaaca cccctcgctt      4860
     gtgtccgtcg accgcataaa gccagcatgt acaaccgaag gaataatctc gtcagcccca      4920
     caacaaccgt cacccgacca actgctgacg agccaaggat acgctactcc ggtggcccaa      4980
     ccaccgtcga cgcaacaatc gacgatgagc cagcgactca caactccgat gcccggaccg      5040
     tcgacgctcg accagctgcc atcgtacaac cagtcatcgc tgccagatca gcagccaacg      5100
     gccacacagt cgccttcgac catacagctg ccgtcaacaa accaaccgcc gatgtcccgg      5160
     aaccgcgcca cacgaacatc acccatgccg tcgctacaac cagccagagc aaccaccagc      5220
     ttcgccccac caccgcctat cttacgcaag gatcaaaacg tatcgaccgg tgttaccaga      5280
     tctcaacgaa gagtagtaat tcctctgcga taccgataac accgatctag gaggggaatc      5340
     c                                                                      5341
//
ID   GYPSY52-LTR_AG repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY52-LTR_AG is an LTR of retrotransposon GYPSY52_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY52_AG; CsRn1 lineage; GYPSY52-I_AG; GYPSY52-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-393
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY52_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 97-97 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY52-LTR is a long terminal repeat of GYPSY52_AG (its internal
CC   portion is deposited as GYPSY52-I_AG).
XX
SQ   Sequence 393 BP; 116 A; 112 C; 78 G; 87 T; 0 other;
     tgtagcgacc agagctccat ctggtgcgca cacctagaac taccgacaga aaatgtttaa        60
     cgggctagtt aggcagggac tgcacacaaa gctagagcag gacaaacagt ggtagcatgc       120
     tgcaccgcag ctataaaaac ggtggcttgc tccatacacg ctctctctcg tcctaaacgt       180
     ttcaacaccg acacgcgcat atccgtccgg cttaccaaac acttcttctc cggcaactct       240
     cgaacgaaca acactaattt tcgcgtctct cccgaactca ccgttccgcg gcttaaaaga       300
     aaaaaataaa tcgaattcta ccaaaacgta gttcgcaaag cgtgttgcgt atctctttaa       360
     aaaattaggg accacttttg tggcgcccct aaa                                    393
//
ID   GYPSY53-I_AG repbase;    DNA;    INV; 4127 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY53-I_AG is an internal portion of retrotransposon GYPSY53_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; CsRn1 lineage; GYPSY53-I_AG; GYPSY53-LTR_AG;
KW   Gypsy clade; RNase-H; reverse transcriptase;
KW   integrase GYPSY53_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4127
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY53_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 98-98 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY53_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the CsRn1
CC   lineage of other organisms.
CC   GYPSY48_AG, GYPSY49_AG, GYPSY50_AG, GYPSY51_AG and GYPSY52_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY53-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies.
CC   The consensus encodes the 295-aa GYPSY53_AG1p gag-like
CC   polyprotein (pos. 115-999) and the 1034?aa GYPSY53_AG2p
CC   pol-like polyprotein (pos. 1003-4104).
CC   The sequence of the LTRs flanking GYPSY53-I_AG is deposited as
CC   GYPSY53-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1003..4104
FT                 /product="GYPSY53_AG2p"
FT                 /translation="RHSADAMGESGEHSSTVTIFRLKITDSTSCMQFLIDT
FT                 GADVSVVPRGLHSAKVKPTSLQLFAANGTPIKVYGEVLLKVNLGLRREFLW
FT                 SFLIADVTSGIIGADFLRNFDLLIDLKRNRLIDNTTHLESNGSLAKSSKYS
FT                 IKTFNSVSPYADLLAQFPTITRLAPPGTISQSTICHRIETTGQPVYARPRR
FT                 LPPDKLEAARTEFEHLMKLGICRPSSSNWASPLHMVKKADGSWRPCGDYRA
FT                 LNAQTVPDRYPLPYLQDFTTILQGKTIFSKVDLQKAFHQVPIHPDDVPKTA
FT                 ITTPFGLFEFSFMTFGLRNAAQTFQRLIHEVVRGLDFIFPYIDDLFIASSS
FT                 PDEHREHLRMLFERLKQHNLAINVAKCEFGRDTLDFLGHSVSAEGIRPLLE
FT                 RVEAVKNFKQPSTVKDLKSFLAMINFYRRFVPNAIQVQIPLLTMIPGNKRN
FT                 DRTPLTWTDETMAAFNRCKQQLAEAVLLAHPAKSAELSLWVDASDIAAGAV
FT                 LHQIVDGNAQPLGFFSKKFDKAQLRYSTYDRELTAIFLAVRHFKFMLEGRN
FT                 CHIYTDHKPIIFAFHQKLDKASDRQARQLDFIGQITTDIRHIVGKENIVAD
FT                 LLSRIAAIQTVPTLDYDALADDQKIDEEIQDIQQGKLKLSLNLKSFSIPGS
FT                 KKQLLCDCSGDRIRPFFTRRFRNTALQATHHLSHPGTRATATMMTERFVSP
FT                 NIRKESIAFARNCLQCQRSKVTRHTQSPVSRYSAPDSRFAHINIDIVGPFP
FT                 PSRGNRYCLTIIDRFTRWPEAFPIPDMTATTIADALVSGWVSRFGVPACIT
FT                 SDQGRQFESSLFSELARLLGSSHFRTTAYHPQSNGIIERWHRTLKSAILCH
FT                 DADHWSEHLPIILLGLRTVYKEDIKASPAELVYGTTLRIPSEFFVDVSQST
FT                 NEAEFVTKLRRAMRDLRPQETARHGNRSVFMHQDLQTCRNVFVRNDSIRPS
FT                 LSLPYEGPFEVMNRTDKFFKLNIRGRTTNVSIDRLKPAYALEEQQTPIITK
FT                 HAATTPTLTPSAKVTRSGRQVIIPSRYR"
FT   CDS           115..999
FT                 /product="GYPSY53_AG1p"
FT                 /translation="MMNSEDKKTDAAADGTSRDAAQSLVGEIKAPRLNPPS
FT                 MTDTNIETYFMSLEFWFAASGISSAYDVRRYNIVMAQVPPNKLTELRSIID
FT                 GTPAYDKYKYIKRELIVHFADSQQRRLQRVLSDMPLGDMKPSRLFNEMKRV
FT                 AGDALSEEVLLDLWAARLPPHAQVAVIASRGDAADKTTIADAIVDSMGLRK
FT                 IDAIDHMQNFAMAPSHIREQEVVDPIQELHREIAELSKRLERVLPNRRNER
FT                 GRSLSRSRRSDWNDNRSLREPSTGPCWYHRTFGNDARRCRKPCTTGARFAS
FT                 NQQ"
XX
SQ   Sequence 4127 BP; 1107 A; 1086 C; 948 G; 986 T; 0 other;
     gtggtgaccc cgacgtgatc caccatcatt taatccgtaa tttgctaatt cattaccgca        60
     tcgaaccgtg catcgcaaat taagtgtaaa ttcggttgat tacgttttcg cgcaatgatg       120
     aatagtgaag ataaaaaaac cgacgccgcc gccgacggca cgagtaggga tgcagcacaa       180
     tcgctcgtag gagaaataaa agcaccgaga ctaaatccgc ccagcatgac cgacacaaac       240
     atcgaaacct atttcatgtc gctggaattt tggtttgcgg catcggggat cagctcagca       300
     tacgatgtgc gccgatataa tatcgtgatg gctcaggtgc cacccaataa gctgacggaa       360
     ctacgctcga tcatcgatgg cactccggca tacgataagt acaaatacat caaaagagag       420
     ttgatagtgc attttgccga tagccagcag cgccgtcttc aacgtgtcct ctcggacatg       480
     ccgctaggag acatgaaacc tagtcgttta tttaacgaga tgaagcgagt agcgggcgat       540
     gcattgagtg aggaagtgct gcttgatttg tgggcagctc gattgccgcc acatgctcaa       600
     gtagcggtga tcgcttctcg aggagatgct gcggataaaa cgaccatcgc cgacgccatc       660
     gttgattcga tgggactacg aaaaatcgac gccattgacc acatgcaaaa tttcgcgatg       720
     gcgccttccc acatcagaga acaggaggtt gttgacccta tacaggaact gcatcgtgaa       780
     atcgccgaat tatctaaacg gctcgaaaga gttttgccca accgaagaaa tgaacgcgga       840
     cgatcgcttt cccgttctcg tcgtagtgat tggaacgata accgtagctt aagggagcct       900
     tctaccggac cgtgttggta tcatcgcacg ttcggcaacg acgcccggag gtgtcgaaaa       960
     ccgtgtacga ccggtgcacg atttgcatct aaccagcaat gaagacactc tgctgatgct      1020
     atgggggaat ccggcgaaca ttcctccaca gtcacaatct ttcgcttaaa aattacggac      1080
     tcaaccagct gcatgcagtt tttaatcgac acgggtgccg atgtgtccgt agtgccgcga      1140
     ggattgcatt cagcaaaagt gaagccaacc tctctacaac tgttcgccgc aaatgggaca      1200
     ccaattaaag tttatggaga agttctacta aaggtcaatc ttggcctccg acgagaattt      1260
     ttgtggagtt tcctgatcgc cgacgtcaca tcaggaataa ttggtgccga ttttttacga      1320
     aatttcgatt tattaatcga tttaaaaaga aatcgcctca tcgacaacac cacccatctc      1380
     gagtctaacg gatcgcttgc caaatccagt aagtactcca ttaaaacgtt taattcagtg      1440
     tcaccatacg cagatttact ggctcagttc ccgacgatca cccgtctcgc acccccgggg      1500
     acgatcagcc aatcgacgat ctgtcatcga attgaaacta caggacaacc ggtatacgct      1560
     cgaccaagac gcctgcctcc cgacaaacta gaagcagctc gaactgaatt cgaacacctg      1620
     atgaaactcg gcatatgccg accctcaagc agtaactggg ccagccctct tcatatggta      1680
     aaaaaggcgg atgggtcctg gcgaccatgc ggggactacc gtgccttaaa cgcccagacg      1740
     gttccagatc gataccctct gccctacctt caggacttca cgaccatttt gcaaggtaaa      1800
     actatatttt ccaaagttga cttgcagaag gcgtttcacc aggttcccat ccatcctgac      1860
     gacgtaccta aaacggccat cacgacacct tttggcctct ttgagttctc ctttatgacg      1920
     tttggattaa ggaacgcagc tcaaaccttc caacgcctga ttcacgaggt cgttcgggga      1980
     ctcgatttca tctttccgta tatcgacgat ctgttcatcg cttcgtcttc gcctgatgag      2040
     catcgggagc atttacgcat gctgtttgag aggctgaagc aacacaactt ggcaataaat      2100
     gtagccaaat gcgaattcgg gcgtgacaca ctcgattttt tgggacattc tgtctccgct      2160
     gaggggatcc gtccgctttt ggagcgcgtc gaggccgtca agaatttcaa acagcccagt      2220
     acagttaaag atttgaaaag tttcttggcc atgatcaatt tttatcggcg gttcgtccca      2280
     aacgcgatcc aggtgcagat tcctctgctg acgatgattc ccggcaataa gcgaaacgat      2340
     cgtacgccgc tgacctggac cgatgagacg atggccgcat ttaaccgttg caagcaacag      2400
     ctagccgaag cagttttgct agctcacccc gccaaatcag ccgaactatc tctctgggtc      2460
     gacgcttcag atatcgctgc aggcgcggta ttgcaccaaa ttgtagatgg aaacgcacaa      2520
     ccgctaggat ttttttcgaa aaaattcgac aaggctcaac ttcgctacag cacgtatgat      2580
     cgcgagctta cagcgatttt cctggctgtg cggcatttca agttcatgct agaaggacga      2640
     aattgccaca tctacacgga tcacaagccg atcatcttcg cctttcatca aaagctcgac      2700
     aaagcttccg atcgccaagc tcgtcaattg gacttcatcg gacagataac gacggacata      2760
     aggcatatag tgggcaagga gaacatcgtt gctgatttgc tctcccgcat cgctgccatc      2820
     caaactgtgc ctacgctcga ttacgacgcc cttgctgatg accaaaaaat cgacgaggaa      2880
     atccaggaca ttcagcaagg taaattaaaa ttgtcattga atctaaagtc tttttcgatt      2940
     ccaggcagta agaaacaact gctatgtgat tgttcaggcg atcgcattcg accctttttt      3000
     acgagacgtt ttcgtaacac agcgctgcag gcaacacatc atctttctca ccctggcact      3060
     cgtgcaacgg caacaatgat gacggagaga tttgtatcgc ccaacattcg caaggaaagc      3120
     atcgcttttg ctagaaactg cctacagtgc caacgatcga aagtcactcg ccacacgcaa      3180
     tcgcctgtgt ctcggtactc agcacccgac agtcgatttg cgcacatcaa tatagacatc      3240
     gtggggcctt ttcctccgag tagaggaaac cgttattgcc tgacaatcat cgacagattc      3300
     actcggtggc cggaagcatt ccccattcca gacatgaccg cgacaacaat cgccgacgct      3360
     cttgtttccg ggtgggtatc cagatttggc gttcctgcat gcataacgtc cgatcaaggg      3420
     cgccagttcg agtcatcgct gttttccgaa ctagctcggt tgctcggatc cagccatttc      3480
     cggactactg cgtaccatcc ccaatcgaat ggtatcatcg aacgatggca taggacactt      3540
     aaatcagcaa tcctctgtca cgatgccgac cactggagcg agcatttacc gatcatattg      3600
     ctcggtttgc ggacagtgta caaggaggac attaaagctt cacctgctga gttggtatac      3660
     ggaacgaccc tccgaatacc atcggagttt tttgttgacg tatcgcaaag cacgaatgaa      3720
     gctgaatttg tcacaaaact acgaagggct atgcgtgatc ttcgccccca ggaaaccgcg      3780
     cgacacggaa atcgaagtgt attcatgcat caagacctgc aaacgtgcag gaacgtattt      3840
     gtgcgtaacg attcaattcg accatcgtta tcacttccgt acgaaggacc gttcgaggtg      3900
     atgaaccgaa ccgacaagtt ttttaaactg aacatccgtg ggcgcacaac taacgtttcg      3960
     atagatcgtc taaaacccgc ttacgcgctg gaagaacagc aaacgccaat tattacgaaa      4020
     catgctgcca caactcctac tcttactcct tcggctaaag tcacgcgttc gggtcgacaa      4080
     gttataatcc cttctcgtta ccgttaactt gtctaggagg ggagtac                    4127
//
ID   GYPSY53-LTR_AG repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY53-LTR_AG is an LTR of retrotransposon GYPSY53_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY53_AG; CsRn1 lineage; GYPSY53-I_AG; GYPSY53-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-300
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY53_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 99-99 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY53-LTR is a long terminal repeat of GYPSY53_AG (its internal
CC   portion is deposited as GYPSY53-I_AG).
XX
SQ   Sequence 300 BP; 92 A; 75 C; 41 G; 92 T; 0 other;
     tgtggcaacc ttgcgtatta ctgcaacgca ctgtaaagtg ccgaaagctt ttaacctttg        60
     taaggttccg tacacacctt tacgcttccg tgtctattgc gaaactaata cgcgttcctc       120
     tattaacact aatactacaa acttatacta cctacgctat gtaaggatca ttacactact       180
     accacgaaat cttccagttg aatttgtaca gaataaaatt aagttagtct tatctcgcaa       240
     tctatctcga tcacatctct ttccccgtta aattcctaca aatcgaaaga acgcgctaaa       300
//
ID   GYPSY54-I_AG repbase;    DNA;    INV; 5874 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY54-I_AG is an internal portion of retrotransposon GYPSY54_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY54-I_AG; GYPSY54-LTR_AG; Gypsy clade;
KW   mdg1 lineage; RNase-H; reverse transcriptase;
KW   integrase GYPSY54_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5874
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY54_AG, a member of the Mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 100-100 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY54_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the Mdg1
CC   lineage of other organisms.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG,
CC   GYPSY13_AG, GYPSY14_AG, GYPSY15_AG, GYPSY16_AG and GYPSY17_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY54-I_AG consensus was reconstructed after multiple
CC   alignment of 4-7 copies.
CC   The consensus encodes the 440-aa GYPSY54_AG1p gag-like
CC   polyprotein (pos. 305-1624) and the 1183?aa GYPSY54_AG2p
CC   pol-like polyprotein (pos. 1558-5106).
CC   The sequence of the LTRs flanking GYPSY54-I_AG is deposited as
CC   GYPSY54-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           1558..5106
FT                 /product="GYPSY54_AG2p"
FT                 /translation="IFTRAFSIYLPKASISKHAYKKLIQGTLVDFNTKTSV
FT                 PLKQNNMFSVGLQTETCKETKQTLHSTPIDECESLNIECTRDGRLMAKILS
FT                 QNVNKKMVNFLIDSGACFNALSLDIAKELGLDFMNHNDKVTLSSFDGSLSN
FT                 TEGSMFLKLHIGNFVYPIKFYILEKLSVPAIIGADFLKKYTMCIGSNFQII
FT                 YLKKPLNTEPLNTADENIKKNMDELEQIDGTLFENSDNTQKENFELLPHIE
FT                 KQLADCDVVKTSKDRELVGSERYKELMDKINLNHLNNATKINTKKIIADFS
FT                 DIFYLPGDKLTYTQAATHEIETSSNIPIFKRQYRFPTALNMIMEEQIEEML
FT                 KQHIIRPSKSPWNAPVMCIPKKSENDQKKYRIVVDFRALNIITKPFIYPIP
FT                 RIDDIMDNIGNSKIFSTIDLKSGFFQIPIAPKDAEKTAFSTSKGHYEFLRM
FT                 PMGLKNSPATFQKLMNTVLYTIQPIKAFVYLDDIVVFGDTVEEHNNTLTKV
FT                 LEALKCHNLKIEPAKCKLLHTEITYLGHTINEKGIKPTQLNVKAILNMQTP
FT                 KNLKEVRSFLGTINFYGKFIPNVSDIRKPLHELLKKNVKFIWNERCDEAFT
FT                 KLKSLLISEPLLVRPDFGDVFVITTDASDYALGAVLTNEKTIERPIAYASR
FT                 TLVGAEKRYHPIEKELLAIVWAVDHFKHYIYGQKFIIYSDHRPLVSIWRLK
FT                 ENSPVLSRLRLRLQGLECEIRYKKGKENIVADFLSRLPEVKENEHDEEVNN
FT                 TVAVVTRGQTKKKVVLELNNDNGEERIEASKSTTLQDDHWENLMKIDLEKE
FT                 TSEKEAKRKEQLEKVKQTVVTKFQNYNPFSDKIEIERSEINTVLHEFHDAP
FT                 LGGHVGVRRMKKRIKELFFWKGMDRDIEGHVKGCKSCQLNKIGRFNKIPMQ
FT                 ITTTSKQAFEKMFMDIVVLPESERGNKYGLVIQDDLSRYLIVTALENQEAT
FT                 TVAKAFVEEVICRYGAPVEIVTDQGTNFMSQIMKETCKILKIKKINTSAYH
FT                 PQANLVERANRELKIYLRQFVGKNYQQWDSVLPYFAMEYNTSINSSTGFTP
FT                 YELVFGRKARLPTSIYKEKNRKKLYSDFCEELITKLTEIHSIARNNLINSK
FT                 EKRKEKYDRNAIDWQPMWGEMVLVRNNQTGVGQKLQGIWKGPYEVVGIPSE
FT                 QTCEIRNGRKIEKVHNNRLKKFNE"
FT   CDS           305..1624
FT                 /product="GYPSY54_AG1p"
FT                 /translation="MNPRVLALRNRSVQVHSKSVNNINPSLPQLNSTANSE
FT                 SCLNTQYNYQKRLQILKGELLNQSLEIDRALNASFSKMAYEFPTEKAMLCI
FT                 PEYHGAAKELDGFLFQVEYFANQIPRGESEEDLIRTVMFKLKGNAAGFFSR
FT                 ILDDTWANVKLNLIKLFGEKMSVEAIFQQVETLQQGVNEPFTQYKERVARL
FT                 KQNIMNIDTKNSEDSYAQKNLKIHFLAGLRNPELQTLARTNKHLEFDDLLE
FT                 YLEDEVVQIEHIRKIEARLNRSQTPVPNNEYDETYNASQNNSFNNRSMGHN
FT                 TTYGGNQPHTLMNNSSASRCDHNNTNNLDTCDFGQPQHNSTTHNQNNTNFN
FT                 YDGQPQHNSTTHNQNNTYFNSSLAQPNRYFASYKNNYTQHPRKHYYQNRNQ
FT                 YTQPPQHHYENTCPPSSQNYYAHKFSQGPSQYTYQKQAYQNMHTKN"
XX
SQ   Sequence 5874 BP; 2297 A; 949 C; 1097 G; 1531 T; 0 other;
     tctggtgaca gcggtaaagc gcatacttag tagcgcaaat aacgctaatt ctggctggtg        60
     tatgaatcag gtatagtggt gaaggaaaaa aaaatttttt ttgggtaagt ggtgaaggga       120
     aaatcgtagc ttgttagtga ttaagtgata attagtgaaa taagtgtaaa ttttcatttt       180
     tttttctcaa caagtttcct taaaagtatc aacttagtaa taataagcag taagaggtag       240
     ttggtacagt agtttaagta tcatttttat taatccttca ttctttacgc ttacgtagag       300
     ggtaatgaac ccaagggtgt tggcacttag gaacagatct gttcaggttc attcaaaaag       360
     tgtaaataat attaatccat cattaccgca actaaactcc acggcaaata gtgaaagttg       420
     tctaaacaca caatataatt accaaaaacg cctccaaatt ctcaaaggag aattattaaa       480
     tcaaagcctt gaaatcgata gagcgttgaa cgcgtcattt tcaaaaatgg cttacgaatt       540
     cccaacggaa aaggcaatgc tatgcattcc tgaatatcac ggagctgcaa aggaattaga       600
     tggattttta tttcaagtgg aatattttgc gaatcagata ccaagaggcg aatcggaaga       660
     ggatttaatt agaacggtaa tgttcaaatt aaaaggaaat gctgctggat ttttcagtcg       720
     catattagat gatacgtggg cgaatgttaa attaaattta ataaagcttt ttggagaaaa       780
     aatgagtgta gaagccattt tccaacaagt ggaaactttg cagcaaggag tcaatgaacc       840
     attcactcaa tataaagaaa gggtggcaag gttaaaacaa aatataatga acatcgatac       900
     gaaaaacagt gaagattctt acgcacaaaa aaatttaaaa attcactttt tagccggatt       960
     aagaaaccca gaactgcaaa ctttagccag aaccaataaa cacttggaat ttgatgactt      1020
     gttggaatat ctggaagatg aagttgttca aatcgaacat attcggaaaa ttgaggctag      1080
     actaaatcgc tcgcaaacac cggtaccaaa taatgaatat gatgaaacct acaatgcgag      1140
     tcaaaacaat agttttaata atcgttcaat gggccacaac acaacgtatg gaggaaacca      1200
     gccccataca ctaatgaata atagtagtgc ctcacgctgc gatcataaca acactaacaa      1260
     tttagatacc tgtgattttg gtcaaccaca acataatagc actacacata accaaaataa      1320
     cactaacttc aattatgatg gtcaaccaca acataatagc actacacata accaaaataa      1380
     cacttacttc aacagtagtt tagctcagcc aaatagatat tttgcatctt ataaaaataa      1440
     ttatacacaa catccacgaa aacactatta ccaaaataga aatcagtaca cacaaccacc      1500
     acaacaccat tatgaaaaca cctgtccacc atcatcacaa aactattatg cacataaatt      1560
     ttcacaaggg ccttctcaat atacttacca aaagcaagca tatcaaaaca tgcatacaaa      1620
     aaactgatac aaggaacact agttgatttt aacactaaaa ctagtgttcc cttaaaacaa      1680
     aataacatgt tttctgttgg tttacaaaca gagacgtgta aggagacgaa gcaaacacta      1740
     cacagtactc ccatagatga atgtgaatcg cttaatattg aatgcactag agacggtagg      1800
     ttaatggcta aaattttgtc gcaaaatgta aataagaaaa tggtgaattt tttaattgat      1860
     tcgggagcct gtttcaacgc cttgagtttg gatatagcaa aagagctagg tttagatttt      1920
     atgaatcaca atgataaagt aactttatca agtttcgatg gatccttatc caatactgaa      1980
     gggtccatgt ttttaaaact acatattggc aattttgtat accctataaa attttatata      2040
     ctagaaaaac ttagcgttcc agctataatt ggagcagatt ttttaaaaaa atatacaatg      2100
     tgcatcggat cgaattttca aataatttat ctgaagaagc cattaaatac tgaaccatta      2160
     aataccgcag acgagaatat aaaaaaaaat atggatgaat tagaacaaat agacggtacc      2220
     ctttttgaaa acagtgataa cactcaaaaa gaaaatttcg aattgctccc acacatagag      2280
     aagcaactcg cagattgcga cgtagttaaa acgagcaaag atagggaatt agtaggttca      2340
     gaaaggtata aggaattgat ggataaaatc aatttaaatc atttaaataa tgcaacaaaa      2400
     atcaacacaa aaaaaattat tgctgacttc agtgatatat tctacctccc gggagataaa      2460
     ttaacataca ctcaagcagc gacacatgaa atcgaaacta gttccaatat cccgatattt      2520
     aaaaggcaat acaggttccc aacagcatta aacatgatca tggaagaaca aatagaagaa      2580
     atgttaaagc agcatataat caggcctagc aaaagcccgt ggaatgcgcc ggtaatgtgc      2640
     ataccaaaaa aatccgaaaa cgatcaaaaa aaatatcgga ttgtcgttga tttccgtgcg      2700
     ctaaatatta tcactaaacc attcatatat ccgattccta gaattgatga tataatggac      2760
     aatattggta acagcaaaat attttcaaca attgacttaa agtcagggtt ttttcaaata      2820
     cctatagcgc caaaagatgc tgaaaaaacc gccttttcaa catctaaggg gcattatgaa      2880
     ttcttaagga tgccaatggg gctcaaaaat agcccggcta cgtttcaaaa acttatgaac      2940
     acggtgctct acacaattca acccattaaa gcctttgtct atttagatga catcgttgta      3000
     tttggggata cagtagagga gcataacaat actttaacta aagtattaga agcattgaaa      3060
     tgccataatt taaaaattga accggcaaaa tgtaaactgc ttcacacaga gattacttat      3120
     ttaggtcaca caatcaatga aaaaggcatc aaaccaacac aattaaatgt aaaggcaatt      3180
     ttaaatatgc aaacgccaaa aaatcttaaa gaagtacgtt catttttagg aactattaat      3240
     ttttatggaa aattcatccc gaacgtctct gatatacgta aaccattaca tgaattattg      3300
     aagaaaaatg tgaaatttat atggaacgaa agatgtgatg aggcatttac aaaattaaaa      3360
     agtttgctta tttctgagcc tttgttagta cgtcctgatt ttggagatgt ttttgttata      3420
     actactgatg ccagtgatta tgctctagga gcagtattaa caaatgaaaa aacaatagaa      3480
     cgcccaattg catatgccag tcgtactctg gtaggagcag aaaagcggta tcacccgatt      3540
     gaaaaggagc ttctagctat tgtttgggca gttgaccatt ttaaacatta tatttatggt      3600
     caaaaattta ttatttattc cgaccacagg ccattagtat ccatttggcg tctcaaggaa      3660
     aattctccag ttttgtctag actgagattg agactgcaag ggttagagtg tgaaattcgg      3720
     tataagaaag gtaaagagaa tatagttgcc gatttcctat cacggcttcc cgaggttaaa      3780
     gagaacgaac atgatgagga agtaaataat acggttgcag tggtaacacg cgggcaaacg      3840
     aaaaaaaaag tagttctcga acttaacaat gataacgggg aagagagaat agaagcaagt      3900
     aagagtacta ctttacaaga tgatcactgg gaaaacttaa tgaaaattga tttggaaaag      3960
     gaaacaagcg aaaaagaagc taagagaaaa gagcaattag aaaaagttaa acaaactgtc      4020
     gtaaccaaat tccagaacta caacccattt tctgataaga ttgaaattga gagaagcgaa      4080
     ataaatactg tgcttcatga atttcatgat gccccattgg gaggacatgt gggagtgaga      4140
     cggatgaaga agaggatcaa ggagttgttt ttctggaagg gaatggacag agacattgag      4200
     ggacacgtta aaggttgcaa gtcgtgtcaa ttgaataaaa ttggccggtt caataaaatt      4260
     cccatgcaga taacaacaac gtcaaaacag gcatttgaaa aaatgttcat ggatattgtt      4320
     gttctgccgg aatcagagag agggaacaag tatggattag tcattcaaga cgatcttagt      4380
     agatatttaa tagtaacagc cctggaaaac caagaagcaa caacggtggc aaaagcgttt      4440
     gttgaggagg ttatttgccg ttatggagct ccagtagaga tagtaacgga ccaaggcaca      4500
     aatttcatga gtcagattat gaaagaaaca tgcaagatct taaaaataaa aaaaataaat      4560
     acatcagcat accacccaca ggcaaattta gtagaaaggg ccaacaggga actcaaaata      4620
     tatttgagac aatttgtggg caaaaattat caacagtggg acagtgtgtt gccatatttt      4680
     gcaatggaat acaacacaag tataaattcg tctacgggat ttactcctta tgaattagta      4740
     ttcgggagaa aagctagact tccaacttca atttataaag aaaagaatag gaaaaaatta      4800
     tatagtgatt tttgcgaaga gcttattaca aaactaacag agattcattc aatagcaaga      4860
     aataatttga taaattcaaa agagaaacgc aaggagaaat atgataggaa tgcgattgat      4920
     tggcaaccca tgtggggaga aatggtatta gttaggaata atcagacggg ggttggacaa      4980
     aaattgcagg gtatctggaa agggccttat gaagtggtag gaataccgag cgagcaaact      5040
     tgcgaaataa ggaacggaag aaaaatagaa aaagttcata ataataggtt aaaaaagttt      5100
     aacgagtaac ataaggcatt caaaaaaaaa ataataataa taaaaaccta ggttaagtta      5160
     gtctaacaaa caacaagtag atttgtaaat agatatatat gaacacctta taattagcca      5220
     aattttcaat cgtagtatca taaattcgcg aataagttta gttatagagt tttcatatat      5280
     atctatacat agaaattttt gtaaatagaa ataaggattt aaaaaaaaaa agataaaggc      5340
     gactatagct aacattcccg tgagcaatcg atacacattc cctagcgata cacactataa      5400
     gcgcaaacac atatcgacac tgaaggcacc aacgaaaagc acacggcata aaaggcatgt      5460
     taaaacaaca cctaaactaa acaaggcacg cgaaatgaaa ggttgagctg gcgaggttga      5520
     gcggatgagg ttgaatgatt gatagaaacc gaattgctcc cccagcgttt gttataagcg      5580
     ataagtcccc aagccagaac agaacatctg aaatacgaaa taggtcaaat tagtaaaatt      5640
     tagggtacga taatattaca ttcaaacccc aaacgacact atttacgtat attgcgagca      5700
     ccagcaactt cagatgatta atagcgagac tgcaccacga gggtcgttca ggcggaaatg      5760
     atgcgaaaac cagagatatc aattgataag gcgatatcga tttgcatgaa aaaaacggca      5820
     ctataaaaaa ttttcttgca gcactttcgt taaaaaaaaa aaagtgtaat gata            5874
//
ID   GYPSY54-LTR_AG repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY54-LTR_AG is an LTR of retrotransposon GYPSY54_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY54_AG; GYPSY54-I_AG; GYPSY54-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-311
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY54_AG, a member of the Mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 101-101 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY54-LTR is a long terminal repeat of GYPSY54_AG (its internal
CC   portion is deposited as GYPSY54-I_AG).
XX
SQ   Sequence 311 BP; 98 A; 46 C; 84 G; 83 T; 0 other;
     tgtagcgacc ttagccgcaa caagttctct acacaaccgg ctacgtgtag atggagctga        60
     aggcggcata catggttcgg gcggctgaca ctcagcgaga acaatttatg agaagagagt       120
     gagaagcgat cgagacgagc gaagcgatgg cgaaaaaagg ccattctggt gtcggtgatc       180
     gcgggatacg gtgttaaagt agcgggatta taaaaataaa ttaaattagt tatagttcaa       240
     ataaatgaaa agttagtttt atttagtagt tagaaatagt ttttatcggt catttagtgc       300
     tagttgtttc a                                                            311
//
ID   GYPSY55-I_AG repbase;    DNA;    INV; 4545 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   27-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY55-I_AG is an internal portion of retrotransposon GYPSY55_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY55-I_AG; GYPSY55-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY55_AG; mag lineage; reverse transcriptase.
XX
NM   GYPSY55-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4545
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY55_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 149-149 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY55_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG, and GYPSY69_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY55-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1478-aa
CC   GYPSY55_AGP gag-pol like polyprotein (pos. 98-4531). The
CC   sequence of the LTRs flanking GYPSY55-I is deposited as
CC   GYPSY55-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..4531
FT                 /product="GYPSY55_AGP"
FT                 /note="gag-pol"
FT                 /translation="MSQEEDERRSSQGWQNVMAPVTVHAPQDTGQRPQVPL
FT                 TQFVQQNGSVPPFSASSVQNVPESDNSATAQILKLMQQQMAQQQQILLQLM
FT                 QQTKAPIEQTPLEQILDSLCGHIKEFRYDEENGSTFAAWYTRYEDLFLKDA
FT                 ARLKDEAKVRLLMRKLGTSEHDRYTSYILPKHPRDYSLQETVAKLTSLFGT
FT                 KESLLHRRYKCLKLTKLRTEDFITFACRVNRGIVDFELGRLTEEQLKCLVF
FT                 VCGMKGEEDIEFRTRLLHRIEENQDVTLDQLSAECQRMTNLRQDSAMIERD
FT                 RSEQVFSVQRNANRNQRTNTGPSHYTNEQRTGKPSRPCWLCGSLHWTRECT
FT                 YKTHTCTQCGSVGHREGFCKQQRTKKQPHRKKTFRKRANMQSVTVNVNSLH
FT                 HRRKFLSCSVNGSQIRLQLDTASDITVISRRLWKRIGSPQLFPSSVIAKSA
FT                 SGDKLEMDGEFRATVGINGQEKQAVIFVAKGELALLGIDLAEAFSLWSVPI
FT                 DQLCNNVTSTATTPEGIVRKFPGLFKSTMGFCAKAEVTLHLKPNCSPVFCA
FT                 KRPVAYAMRDAVDAELDRLERLNIITPVQHSEWAAPIVVVRKSNGQLRICG
FT                 DYSTGLNASLHPHDYPLPLPQDIYTKLGNSTIFSQIDLSDAFLQVPIAEQS
FT                 RRLLTINTHKGLYLYNRLPPGIKVAPGAFQQLMDQMLAGMERVASYMDDVI
FT                 VGGRTQREHDDVLNETLRRIQEYGFTIRPEKCSFNKRQVRYLGHILDNHGI
FT                 RPDPAKIAAIKDLSAPTDVSGVRSFLGAVNYYGRFIPNMRKLRYPLDNLLK
FT                 EGSSFKWSPECQKAFEQFKSILSSELLLTHYDPRREIVVSADASSVGLGAT
FT                 IGHKFPDGTFKVVQHASRALTKAEKNYSQIDREGLAIIFAVTKFHNFIFGR
FT                 HFTLQTDHKPLLRIFGSKKGIPVYTANRLQRFALTLQLYDFDINYVSTDNF
FT                 GNADILSRLIRNHEKLEEDYVIASIGLEEDIRSVVVNSLSSVALNATDVAT
FT                 ATKSDPIMSKVIQFVRQDWPRNSTFSGELACFYARKEALSEMGGCLLFGER
FT                 VIIPKALRQRCLRQLHHGHPGVQRMKSIARSYVYWPKIDTDIAELVASCNA
FT                 CASAAKSPPHASPVSWPEITAPWQRIHIDYAGPIDGFSYLIVVDAFSKWPE
FT                 VIRTASTTSKATIRILNTMFARYGMPVTLVSDNGRQFISSEFEDFCICNGI
FT                 EHLTSAPFHPQSNGQAERFVDTFKRAITKITSDGTAIEDALDTFLQTYRAT
FT                 PNPQVPNNEAPATVMFGRQIRTCLELIRPVPKPQETNNDEQRRNFVPNDLV
FT                 FAKIYSQNGWKWKPGRILRKCGNVMYRVMTEDHKIIRSHINQLRRRVPSNQ
FT                 QSSKRDQHLLPLHILLDEWNLTPPSSSPDSSSSSSSSSPSSSSLSPPSDSA
FT                 PCNLSPSSAESSSYRTVSQSSASPPPERDCIPEESHRGAQPVPPPRRSFRD
FT                 RKAPRWFDPYLLY"
XX
SQ   Sequence 4545 BP; 1272 A; 1154 C; 1051 G; 1068 T; 0 other;
     gttggcgacg aggattttta aagtttgtga cgaattttta tcggaagtga atttcgcgta        60
     gtgcaaagct attccaccga caaggaaacg ccgcaggatg agccaagaag aagatgaacg       120
     tcgatcatcg caaggttggc aaaacgtgat ggccccggtt acagtgcacg caccgcaaga       180
     tacaggtcaa cgtccccaag tgccactgac ccagttcgta cagcaaaatg gttcggtccc       240
     accattttct gcatcgtcag tacagaatgt tccggaaagt gataattctg caacggcaca       300
     aattttgaaa ctaatgcaac agcagatggc gcaacagcag caaattttgt tgcaattaat       360
     gcagcaaacg aaagcgccta tcgaacaaac gccccttgag caaatactcg attccttatg       420
     cggtcacatt aaggaattca ggtatgacga agaaaacggt tcaactttcg ctgcatggta       480
     cacgagatac gaggatcttt tccttaaaga cgctgcacgc ttgaaagacg aggcaaaagt       540
     gcgtttattg atgagaaagt tgggaacctc tgaacacgac cgttacacca gctacatact       600
     gccaaagcat ccgcgtgatt acagtttgca ggaaacagtt gctaaattga ccagcttatt       660
     tggcacgaaa gaatccttgc ttcatcgacg atacaagtgt ttgaagctaa ccaaacttcg       720
     caccgaggat tttatcactt tcgcgtgccg ggtcaatcgt ggcatcgtcg attttgagct       780
     gggaaggcta acggaagagc agttaaagtg tttagtgttc gtttgcggta tgaagggcga       840
     agaagacatc gagtttcgta cacgtctttt acatcgcatc gaggagaacc aggatgtaac       900
     ccttgaccaa ctttctgcag agtgtcagcg tatgacgaat ttgcgtcagg atagtgcgat       960
     gattgaacgt gaccgcagtg aacaagtatt ttccgttcaa cgtaacgcaa atcggaatca      1020
     gcgcaccaac acaggcccgt ctcattacac caacgaacag cgtacaggta aacctagtcg      1080
     accatgctgg ttatgtggat ccctgcattg gactcgcgag tgcacttaca agacgcacac      1140
     atgcacacaa tgcggatcgg tcggccatcg cgaaggtttc tgtaagcagc aacgtaccaa      1200
     gaagcagccc catcgaaaga agacttttcg taaacgagcc aatatgcaaa gtgtcaccgt      1260
     gaatgtgaac agcctacatc atcggaggaa atttttatcg tgttcggtca acggttcaca      1320
     aattcggctc caactggata cagcatcgga catcaccgtg attagtcgtc ggctttggaa      1380
     acgcatcggt agcccgcaat tattcccatc atctgtaatc gcgaaatcgg catctggtga      1440
     caaactcgaa atggatggcg aatttcgagc aacggttgga atcaacgggc aggagaagca      1500
     agctgtaatt ttcgtggcaa aaggagaatt ggccttgctg ggaatcgacc ttgctgaagc      1560
     tttctcctta tggtctgtgc ctatagacca gctgtgtaac aatgttacca gcacagctac      1620
     tactccggag ggaatcgttc gaaaatttcc cggcctgttt aaatcaacga tgggtttttg      1680
     tgcgaaagct gaggttacac tacacctgaa gccgaattgc agtccagttt tctgcgcaaa      1740
     acgtcccgta gcttatgcca tgcgcgatgc agtggacgcc gaacttgata gactggagcg      1800
     gctcaatatc atcacaccag tccagcactc cgagtgggca gcaccgattg tagtggtacg      1860
     caagtcgaat ggacaactga gaatatgcgg agactattcg acgggactca acgcatcact      1920
     ccacccccat gactatccgc tgccactgcc acaggacatc tacaccaaac tgggtaactc      1980
     gacaattttt agccaaattg acttatctga tgctttctta caggtcccca ttgccgagca      2040
     aagtcgccgc ttgctcacca taaacacgca taaagggttg tacctgtata atcgcctgcc      2100
     accagggatt aaagtagcac caggcgcatt tcagcagctt atggaccaaa tgcttgctgg      2160
     aatggaacgt gtcgcgagtt acatggacga cgttatcgtt ggtggacgaa cacaacggga      2220
     acacgacgac gtactaaacg aaaccctgag acgcattcag gagtatggtt tcaccatccg      2280
     cccggagaaa tgttcgttca acaaacgcca agttcgctac cttggtcaca tcctcgataa      2340
     ccacggcatt cgtccagacc cagccaaaat agctgcgata aaggatcttt cagcgccaac      2400
     cgacgttagt ggtgtacgtt cctttcttgg cgccgttaac tattatggaa gattcatccc      2460
     gaacatgcgc aagcttcgat acccgttgga caacctactg aaagaaggca gttcgtttaa      2520
     gtggtcccct gaatgccaaa aagccttcga gcagttcaaa agtatccttt catcggaact      2580
     gctcctgacg cactacgatc caaggcgtga gatcgttgta tccgcggacg cgtcatccgt      2640
     cggattaggc gcaacaatcg gtcacaagtt ccccgatgga acttttaaag ttgtgcagca      2700
     tgcgtcccgt gcacttacaa aggcagagaa aaactacagc cagatagatc gggaaggctt      2760
     ggcaattatc ttcgctgtga cgaaattcca taattttata tttggacggc attttactct      2820
     acaaacagac cacaagccac ttttgagaat tttcggcagc aagaaaggca tccccgttta      2880
     caccgccaat cgcttgcaga gattcgcgct caccttacag ctgtatgatt tcgacatcaa      2940
     ttacgtatcg accgacaatt ttgggaacgc cgacatcctt tcgcgactga ttcgaaatca      3000
     cgaaaagtta gaggaggatt acgtgattgc tagcatcggc ctagaggagg acatacgatc      3060
     agtcgtcgtt aactcattga gttcagttgc attaaatgca acggatgtcg caacggctac      3120
     taaatccgat cccattatga gcaaagtcat acagtttgta cgacaagact ggccacgtaa      3180
     cagtacgttc agcggtgagc tggcatgctt ctacgctagg aaggaagctt tatcagagat      3240
     gggaggctgt ctcttattcg gggagagagt catcatacca aaggctctcc ggcaacgatg      3300
     cctgcgtcaa ctacatcacg gccatccagg tgtacaaagg atgaagtcga tcgcacgaag      3360
     ctacgtctac tggccgaaga tagacactga tatcgctgaa cttgtagcat cttgtaacgc      3420
     ttgtgcatcc gcagcgaaat cacccccaca cgctagcccg gtatcatggc ctgagataac      3480
     tgcaccgtgg caacgtatcc acatcgatta tgctggcccc atcgacggtt tctcctactt      3540
     aatcgtagtc gatgctttct ctaaatggcc agaggtaata aggactgcca gcacaacttc      3600
     caaagcgacc atacgaatcc ttaataccat gtttgcgcga tacggtatgc cagtaaccct      3660
     tgttagcgat aatggtcgcc aattcatcag ttccgaattt gaggattttt gtatttgtaa      3720
     cggcatagag cacctcacat ccgccccgtt ccaccctcag tctaacgggc aagcggaacg      3780
     cttcgtggat acattcaagc gcgccataac caaaatcacg agcgatggaa ctgcaataga      3840
     agatgcactt gacacgtttt tacaaacata tcgcgccacg ccaaatcctc aagtgccaaa      3900
     taacgaagcg ccagcgacag taatgttcgg acgacaaatt cgcacttgtt tagagcttat      3960
     acgccctgtg cctaaaccgc aagaaaccaa taacgatgag caacgacgca atttcgtccc      4020
     aaatgatcta gtcttcgcta agatttactc gcagaacgga tggaaatgga agccaggaag      4080
     aatattgcgg aaatgcggca atgtaatgta ccgtgttatg actgaggacc ataagattat      4140
     acgaagccat atcaaccaac tacgtcgtcg ggtcccttct aaccagcaat ccagtaagcg      4200
     tgatcaacac cttttgccgc tacatattct cttggatgag tggaacctta cgcctccgtc      4260
     gtcgtcacct gattcatcgt catcatcgtc ctcatcgtct ccatcgtcat cgtcgttgtc      4320
     gccaccgtcc gattcagctc cgtgtaatct atcaccgtcg tccgctgaat catcatctta      4380
     caggaccgtg tcccaatcat cagcatcacc acctcctgaa cgtgattgca tccctgaaga      4440
     gtcgcatcga ggagcacagc cggtaccacc accacgccgc tcttttagag atagaaaagc      4500
     accgcgttgg ttcgacccgt acctgctgta ttaaaagaag ggaga                      4545
//
ID   GYPSY55-LTR_AG repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY55-LTR_AG is an LTR of retrotransposon GYPSY55_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY55_AG; GYPSY55-I_AG; GYPSY55-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-257
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY55_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 150-150 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY55-LTR is a long terminal repeat of GYPSY55_AG (its
CC   internal portion is deposited as GYPSY55-I_AG).
XX
SQ   Sequence 257 BP; 63 A; 64 C; 66 G; 64 T; 0 other;
     tgttgtggga acgcagcctc agcagcgcca gctgctcgac gtcgacattc gcctgtcgac        60
     tattgaagca cgatcgtgtt gagtgcctga gtgttcccgt attggcgaac aaggaccgga       120
     gccgcatgag agttgatacc gagcgctcaa gggcaacgga cggttgcaca cccacacacc       180
     agtattcgcg tatcgtccta tgtgttattt taccgtgttt cctattaagt tttaaataaa       240
     gtgtaagaat cacaaca                                                      257
//
ID   GYPSY56-I_AG repbase;    DNA;    INV; 4726 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY56-I_AG is an internal portion of retrotransposon GYPSY56_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY56-I_AG; GYPSY56-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY56_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4726
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY56_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 151-151 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY56_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY56-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies. The consensus encodes the 1504-aa
CC   GYPSY56_AGP gag-pol like polyprotein (pos. 202-4713). The
CC   sequence of the LTRs flanking GYPSY56-I is deposited as
CC   GYPSY56-LTR_AG.
CC   GYPSY56_AGP:
CC   MNPSGSESSEEEQRRLSQMFWQQSAAAVHQPASGSSSAFVLGSLDQQARGQVASVQNPPSLVTA
CC   PAQNAGVPPSLSAAPGQNATISPSHNTGQTLSSQPQNASSPDLMQMILQLQIQMNQLMMQKQHQ
CC   PERQSVSVPVLNPEQILDSLSSHVREFQYDEEAKITFAAWYARYEDFFAKDASRLEDEAKVRLL
CC   VRKLGAAEYNRYANFILPRYTRDFSFQETINKLTALFGNRESLLSRRYKCLNTTKARGEDYLSY
CC   ACRVNRVCVDFEIGKISEEQLKCLVFVCGIKNEEDVEIRTRLLSRIEDRTDITLESLTADCQRI
CC   INLKEDSAMIEKVHEGNVYAVKKDVKQQQGFQHRQRSKQQLKFYRSCWSCGGQHLQRDCTRKRI
CC   VCNVCGKQGHIGKNCFHRRKPFGFRRRNDSADLRVVRVNAMSVCGRRKFVPVKLFGMDVRLQLD
CC   TASDITVIDRQLWKRIGSPCLRPVTIRAKTASGARLQLNGEFRAQVGIKEKSLVATIRVADANL
CC   RLLGTDLIDRFNLWSVPMDRFCCYISENQERPAESVMKIEQIKEQFPTVFRNTLGLCTKANIKL
CC   KLREGVAPIFRPKRPVAHAMESAVDDELNRLEKLGVITPTNFSEWAAPIVVVRKANGQIRICGD
CC   YSTGLNSSLCAHEYPLPLPDDIFAKLSGCHIFSKIDLSDAFLQVQIDEDYRHILTINTHRGLYY
CC   YNRLPPGIKVAPAAFQQLIDTMLAGTKRVCGYMDDLIIGGATEAEHDRHLKDVLKRIEEYGFTI
CC   RNEKCEFKTNEIRYLGHVIDSQGLRPDPNKIAAIRNLPEPTNLTEIRSFLGAINYYGKFVPNMR
CC   QLRFRLDELLKHGERFQWDHKCKEAFDQFKKILSSNLLLAHYNPNEKIVVSADASSVGLGATLS
CC   HRYADGSMKVVQHASRALTEAEKRYSQIDREGLAIVYAVTKFHRMLYGRHFLLQTDHRPLLQIF
CC   GSKKGIPIYTANRLQRFALTLQLYDFEIEYVRTEQFGNADILSRLIKNRSQPEDDYVIASIEME
CC   RDVKAMAIEAMSNFPISFREIERHTSADAMLRKVRHYIQDGWPTSVSYGNELACLNSRKDALTL
CC   IDGCILFGERVVIPQRLRERCLKQLHQGHPGMQRMKSVARSYIYWPFLDRDIMEYVRTCSSCAT
CC   AAKSPPHESPQAWGKTNTPWERIHVDYAGPIDGEYFLIVVDAHSKWPEIFKTPSSTSTATITML
CC   RGLFARFGMPVTLVTDNGTQFTSEAFSDFCLKNGVHHMRTAPFHPQSNGQAERFVDSFKRALRK
CC   IRIGGMALQEAIDIFLQTYRTTPNPQVEQNKSPAELMFGRHIRTCFELLRPPPRLENQATYNST
CC   RLFKQSDLVFIKEYSRNNWKWIPAVIVRRIGHVMYLVQTNDRRTRRCHMNQIRQRFYESTENRS
CC   LASIPLSVLLESWNLPLPPQTTINPSETETPVACTSIPQTSTTCMLQPESASQPTIASSRSTQH
CC   TPCHREAQQPLAPRRSSRNRTVPRRFAPYRMN.
XX
SQ   Sequence 4726 BP; 1514 A; 870 C; 1147 G; 1195 T; 0 other;
     gtggcgacga gtgataaaaa agcgatgtta aaagaaaatt gtgtgtgtat gtgaacatta        60
     acattattcc gtgataaaat tggtgtttaa gacaaatata gcagcgagtg aattgtacga       120
     gaaaaaaaaa gaactatcag tgaaagaagt attgagtgaa gaaaagtgga caaaattccg       180
     tctaaacgca agcgcaggag aatgaatcca agtggcagcg aatcatcgga agaggagcaa       240
     cgacggcttt cgcaaatgtt ttggcagcag agcgcagcag ccgtacacca gcctgcaagc       300
     ggatcgtcca gtgcgttcgt gttggggtca ttggaccagc aagcgcgcgg tcaagtggcg       360
     tcagtgcaga atccgccatc gcttgtaaca gcgccggcac aaaacgcggg ggtgccgcca       420
     tcgctgagtg ctgctcccgg gcagaatgcg acgatatcgc catcgcataa tacgggacaa       480
     acgctttctt cccaaccaca aaatgcttcg tcacccgatc taatgcagat gattttacaa       540
     ttgcagatac aaatgaacca gttgatgatg cagaaacaac accagccaga gcgtcaatct       600
     gtgtccgttc cagtgcttaa tccggagcaa atactggatt cgttaagttc ccatgtaaga       660
     gaatttcagt atgacgagga agctaaaatt acttttgcgg cttggtatgc acgatatgaa       720
     gattttttcg caaaagatgc atcgaggttg gaagatgaag cgaaagtgcg tttgttagtc       780
     agaaagttag gtgctgcgga gtataatcgt tacgctaatt ttatattgcc gaggtatacg       840
     cgagatttca gtttccaaga aacgataaat aagctaacgg ctctgtttgg taatagggaa       900
     tctctattaa gcagaaggta taagtgcctc aatacaacaa aggctcgtgg ggaggattat       960
     ttgtcgtatg cgtgtcgtgt aaaccgtgtg tgtgtagatt ttgaaatcgg caagataagt      1020
     gaggaacaat taaaatgcct agtgtttgta tgtggaatta aaaatgaaga agatgtggaa      1080
     ataaggacac gtttgctatc gcgtatcgaa gatcgtacag atataacgct agaaagcttg      1140
     accgccgatt gtcagcgtat tatcaattta aaagaggaca gtgctatgat agaaaaagtt      1200
     cacgagggta atgtttatgc cgtaaaaaaa gatgttaaac agcaacaggg gttccagcac      1260
     aggcaacgaa gcaagcaaca gttaaagttt taccgatcat gctggtcatg cggaggacag      1320
     catttacaac gtgattgtac tagaaagcgt attgtgtgca acgtgtgtgg taaacaaggg      1380
     cacataggga aaaattgctt tcaccgaaga aaaccgtttg gattccgtcg aaggaatgat      1440
     agtgcagatc tacgtgtggt tcgagtaaat gctatgagcg tatgtggtcg gcggaagttc      1500
     gtgcctgtaa aactgtttgg tatggatgtg aggttacaat tagatacagc ttcggatatt      1560
     acggttatag atcgtcagtt atggaaaaga attgggagtc catgtttaag gccagtgaca      1620
     ataagagcca aaacagcatc tggtgctagg ttgcagctaa acggagaatt tagagcacaa      1680
     gttgggatta aagaaaaaag tctagtagca acaatacgag tggctgatgc gaatttacga      1740
     ttgcttggta cagatttaat cgatcgtttt aatctgtggt ctgtaccgat ggatagattt      1800
     tgctgttata tttcggaaaa tcaagagaga ccagcggaaa gtgtaatgaa gatagagcaa      1860
     attaaagagc aatttccgac agtttttcgc aacacattgg gattatgtac taaggcaaat      1920
     ataaagctga agttaagaga aggtgttgca cctattttcc gtcccaagcg gcctgtagct      1980
     catgccatgg agagtgccgt agatgatgag ttgaatagat tagaaaaact tggagttata      2040
     acacctacaa acttttctga atgggcggct cccatagtag tagtaaggaa agcaaatggg      2100
     caaattagaa tatgtggcga ttattcaaca gggttgaatt catctttatg tgctcatgaa      2160
     tacccgcttc cattgcccga tgacatattc gcaaagctat caggatgcca catatttagc      2220
     aagatagatt tatctgatgc attccttcaa gttcagatag acgaagatta ccgacatatt      2280
     cttacaatca atacgcatcg tggcctatac tactataatc gcctcccacc aggcataaag      2340
     gttgctccag cagcttttca gcaactgatc gacacaatgc tagctggaac taagagagtg      2400
     tgtgggtata tggatgattt aatcatcgga ggcgcaaccg aagcagaaca tgataggcat      2460
     ttaaaggatg tgttaaagcg aatcgaggaa tatggattta ccatcagaaa cgaaaaatgc      2520
     gaatttaaaa cgaatgaaat aagatacctg gggcacgtaa ttgatagtca aggtttaaga      2580
     ccagatccaa ataagattgc agcgataaga aatttaccgg agcctacaaa cctcactgag      2640
     attagatcgt ttctgggagc cataaattat tatggaaaat tcgtgccgaa tatgcgacag      2700
     ctccgatttc gcttggatga attattaaag cacggagagc gtttccagtg ggatcataaa      2760
     tgtaaagaag cgtttgatca gtttaagaag atactttcat caaatttgct cctcgcgcac      2820
     tataacccta atgaaaagat agtggtatca gctgatgcat cctctgttgg gttaggagct      2880
     acattgagcc ataggtatgc ggatggtagt atgaaagtgg ttcagcacgc ttcgagagcg      2940
     ttaacagagg cagagaaacg atatagccaa attgaccgtg aagggttggc aatagtttat      3000
     gcagtaacaa aattccacag aatgttatat ggacggcatt ttttactgca gacggatcat      3060
     cgaccgctat tgcaaatttt tggctctaag aaaggcatac cgatttatac agcaaataga      3120
     ttgcaaagat ttgcattaac tctgcaatta tacgattttg agatcgaata cgttagaact      3180
     gagcagtttg gcaacgcgga tatattatcc agattgataa aaaaccgttc gcaaccagag      3240
     gatgattatg ttatcgccag tatagagatg gaaagagatg taaaggctat ggcgatagag      3300
     gccatgagta attttcctat aagcttcagg gaaatagaaa ggcatacatc ggcagacgcg      3360
     atgctacgta aagtgcgaca ttatatacaa gatggttggc caacaagcgt gtcttacggt      3420
     aatgagctag catgtcttaa tagcagaaag gatgctttaa cgcttattga tggttgtatt      3480
     cttttcgggg agagagtggt gataccacaa agattgcgag agcgttgttt gaagcaattg      3540
     caccagggtc atccaggtat gcaaagaatg aagtcagttg cacgaagtta tatatattgg      3600
     ccattcttgg atagagatat aatggagtat gtcagaacat gttcatcgtg tgcaactgcc      3660
     gcaaaatcac caccacatga atctccacag gcttggggta aaactaacac tccatgggag      3720
     cgcatacacg tagattatgc aggacccatt gatggggaat attttctgat tgtagttgat      3780
     gcacactcta agtggccgga aatatttaag acaccaagta gtacatcaac agctacgata      3840
     actatgttga gaggattatt cgcccggttt ggcatgccgg tgactttagt aacagataat      3900
     ggtacgcaat ttaccagcga agcattcagt gatttttgtt tgaaaaatgg tgtgcatcat      3960
     atgagaacag cgccgttcca ccctcagtcc aacggccagg ccgagcgttt tgtggattcg      4020
     tttaaaaggg cattgcggaa gataagaatt ggtggcatgg cgttacaaga ggcaatcgac      4080
     atattcctgc aaacgtatag aacaactcca aatcctcagg tagagcagaa caaatcaccc      4140
     gcagagctca tgtttggaag acatattaga acctgttttg agttactgcg gccgccacca      4200
     agactagaga accaagccac atacaacagc acgagattat tcaaacaaag cgatctagta      4260
     tttatcaaag agtatagccg aaacaattgg aaatggatac ctgcggttat agttagaagg      4320
     attggccacg taatgtatct agtgcaaaca aatgatcggc gtactaggag gtgtcatatg      4380
     aaccagataa gacaacgatt ttatgaaagc actgaaaaca ggtcattagc tagcattcct      4440
     ctaagtgttt tgttggaatc gtggaattta ccgttaccgc cgcaaaccac gatcaatcct      4500
     agcgagacag agacacccgt tgcatgtacg tctatacctc agacttctac gacatgcatg      4560
     ttacagccag aaagcgcgtc acagccaaca atagcatcat caaggtcgac gcagcatacc      4620
     ccttgtcatc gcgaagccca acagccactt gcacctcgtc gctcttctag aaatagaacg      4680
     gtaccacgaa ggtttgcacc ctatcgtatg aactaaaagg gggaga                     4726
//
ID   GYPSY56-LTR_AG repbase;    DNA;    INV; 226 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY56-LTR_AG is an LTR of retrotransposon GYPSY56_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY56_AG; GYPSY56-I_AG; GYPSY56-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-226
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY56_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 152-152 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY56-LTR is a long terminal repeat of GYPSY56_AG (its
CC   internal portion is deposited as GYPSY56-I_AG).
XX
SQ   Sequence 226 BP; 66 A; 43 C; 64 G; 53 T; 0 other;
     tgttgtgacg agtagaaaac gcccttaggc actcaggagc tgcgcgcctc ggaacgtgag        60
     tgtgttcggg tttagccagg gatcgtgagg acactctcgg ataagcggtc aagcaagtag       120
     gaacgcgatt aggaagtaag cggaataaaa aagtatcctg ttagctgtat gagtaaacgc       180
     gtgttgtttt aacgttttat attacgaacc acccgaaaac gtaaca                      226
//
ID   GYPSY57-I_AG repbase;    DNA;    INV; 4597 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY57-I_AG is an internal portion of retrotransposon GYPSY57_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY57-I_AG; GYPSY57-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY57_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4597
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY57_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 153-153 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY57_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY57-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies. The consensus encodes the 1483-aa
CC   GYPSY57_AGP gag-pol like polyprotein (pos. 135-4583). The
CC   sequence of the LTRs flanking GYPSY57-I is deposited as
CC   GYPSY57-LTR_AG.
CC   GYPSY57_AGP:
CC   MFNPEGDAEMDEQRRLSLNGARALNPGFVQPTQSAPMQPAQPPSQNPVASSAQAGLAMNGSETG
CC   MFLQMLNLMQQQMQQQQQQLSQQQQMMAHMMQQTPHTTAQPQQQAQQAQQYAQQPAAPRNPELI
CC   MDALAGSINEFRFEAESGVTFPAWYARYEDLFVQDASRLEDSAKVRLLIRKLGTAEHARYCNFI
CC   LPRVPRDLTFDDTVSKLKALFGSAESLLSKRYKCLQIVKAHNEDLMTFACRVNRACVDFQFSAM
CC   TEEQFKCLMLVCGLREEGDAEIRTRLLARIEDKADLTLEQLSAEAQRITSLKVDSAMIATEGNE
CC   RVFAMRGDYKQRYAQQTQRSFSKQQHPQQADRSAPAAKPPGPCWLCGDHHWIRDCSYRSHKCED
CC   CGKYGHREGHCNTAGRKKRKNNFYKRSSVATRVVSVNIFSVQQNRKYVTIHIGQKSARLQLDTG
CC   SDITIIGRKTWKQLGMPTLSPAQVHAKTATGAHIQLDGEFEADITINGRTETAIIRVIPSDLQL
CC   LGADLIDIFSLAAMPMNQFCNRIESDSAKWEKRFPAVFHGTGLCTKANIKLQLKENVRPIFCPK
CC   RPVAYAMQATVEKELDRLQALKVITPVDYSEWAAPIVVVRKGNGSIRICGDYSTGLNSALRSYE
CC   YPLPLPDDIFAKLAQSRFFSKIDLSDAFLQVEIDAKYRPLLTINTHRGLYYYNRLPPGIKIAPA
CC   AFQQLIDTMLAGLKGTSGYMDDVIVGGKTEREHDENLLNLFRRIQEFGFTIRADKCAFKMQQIE
CC   YLGFIVDSRGLRPNPAKIDIIQKLPTPTNISEVRSFLGAINYYGKFVSKMRDLRYPLDMLLKDE
CC   SKFLWTRECDRAFSKFKEILSSDLLLTHYDPNAEIVVSADASAVGLGATISHKYADGSIKVVQH
CC   ASRALTQAETRYSQIDREGLAIIFAVTKFHKMLYGRHFCLQTDHRPLVRIFGSKKGIPVYTANR
CC   LQRFALTLQLYDFSIEYVPTTKFGNADILSRLIREHAKPEPEYIIASAELEEDVSFVATNSINA
CC   FPLNFRDVARATNTDAVLKKVHQYVMEGWPRNLSYGADLARFFNRSEALSSVRGCILLGERVVI
CC   PTRLREKCLKQLHEGHPGMQRMKALARSYVYWPSLDEDISECVKTCHACAVAAKSPPHTKPLSW
CC   PATKQPWERIHIDYAGPINGEFYLVIVDANTKWPEVIKANSTSTAGTIAILRGVFARFGFPITL
CC   VSDNGPQFSSTAFTDYCCSKGIQHVTSPPFHPQSNGQAERFVDTFKRSVKKIEEGGASHGEALD
CC   IFLQAYRSTPNAALENHRSPAEAMFNRKIRTAMELLKPPPTTETLPEEHGRGFKSGDCVYAKWY
CC   SRNSWKWVPAQVVRIIGNVIYEVKTDDGRMHRRHVNQLRKRDIGSSEQSTNLAARTQLPLDLLI
CC   EGPRDVVPVEHPTVISSPLLPSSSDGVRGMTSSPPLPSPRPVPVQRRRRQQPVQSPRRSNRSRR
CC   FPRRLDGYLLQ.
XX
SQ   Sequence 4597 BP; 1309 A; 1130 C; 1135 G; 1023 T; 0 other;
     gtggcgacga gttgaaaaaa aaaagacttt ttcagtgcag tgaagtttag tacgaaaggc        60
     attgttaaag tgttcgcgtg tgaagtgcat cctttaccgg aaaagagagg caatttcatc       120
     gaagcggcat taaaatgttt aatcccgaag gcgatgccga gatggatgag cagcgacgtt       180
     tgtctctgaa cggtgcaagg gctctgaacc cgggctttgt tcagccaacg caaagtgcac       240
     cgatgcaacc agcacaaccg ccatcgcaaa atcccgttgc ttcatcggca caagcaggac       300
     tggccatgaa cggttctgaa acgggaatgt ttttgcaaat gctgaatctt atgcagcagc       360
     aaatgcagca gcagcagcaa cagctatctc agcagcaaca aatgatggca cacatgatgc       420
     aacaaacacc acacacgaca gcgcagcccc aacaacaagc ccagcaggct caacagtacg       480
     cacagcagcc cgcagcacca aggaatccag agttgattat ggatgctttg gcaggaagca       540
     tcaacgagtt tcggttcgag gcagaatccg gcgtgacgtt ccctgcatgg tatgcacgtt       600
     acgaggattt gttcgtgcaa gacgcctccc gactagagga ttcagcgaaa gtgcggctgc       660
     tcattcgcaa attgggcaca gcggaacacg cgcggtactg caacttcatc cttccccgtg       720
     ttccccgcga cctcacgttc gacgatacag ttagcaaact gaaggcccta tttggaagcg       780
     cggagtccct acttagcaag cgatacaagt gtttgcaaat tgtgaaagct cataacgaag       840
     acctgatgac attcgcatgt cgggttaatc gcgcttgtgt tgatttccaa ttcagcgcta       900
     tgaccgagga gcagttcaaa tgcttaatgc ttgtttgtgg gttgagagag gaaggcgatg       960
     ctgaaatccg cacacggctt cttgctcgca tcgaggacaa ggcagacctc acgctggagc      1020
     agctttctgc cgaagctcag cgcatcacaa gcttgaaggt ggacagcgcg atgatagcca      1080
     ccgagggaaa cgagcgagtt ttcgctatgc gcggtgacta caagcagcgg tacgcgcagc      1140
     agacacaacg cagcttcagc aaacagcagc atcctcagca agcagacaga agcgcaccag      1200
     cagcgaaacc accgggtcca tgctggttat gcggcgatca tcattggata cgagattgtt      1260
     cgtaccggtc gcataagtgc gaggattgtg gcaagtatgg gcaccgcgaa gggcattgta      1320
     acactgcagg gcgaaagaaa agaaaaaata atttctacaa gcgctcttca gtagcgacaa      1380
     gggtagtttc cgttaatatt tttagcgtac aacaaaaccg gaaatatgtg actatccaca      1440
     ttgggcagaa atcggccagg ttacagctcg acactggctc ggacattacg atcataggac      1500
     gaaagacctg gaaacagctc ggcatgccaa ctctatctcc agcgcaagtg cacgcgaaaa      1560
     cggcaactgg tgcacacatt cagctggatg gcgaatttga agcggatatc acgattaacg      1620
     gaaggactga aacggcgata ataagagtca ttccgtcaga tttgcagcta ttaggagccg      1680
     atctaattga tatcttttcg cttgcagcca tgccgatgaa ccagttttgc aacagaatag      1740
     agagcgattc tgcaaaatgg gagaagcgat ttccagctgt tttccacggt acaggtttat      1800
     gcacaaaggc caatataaag ctgcaattga aggaaaatgt ccgtcctatt ttctgtccga      1860
     agcgtcccgt agcttacgct atgcaggcaa cagtcgagaa agagctagac aggctacaag      1920
     cactcaaagt cattacgcca gttgactatt ccgagtgggc cgcaccgatt gtcgtcgtta      1980
     gaaaggggaa cggtagtatt cgcatttgtg gggattactc caccggacta aattcagctc      2040
     ttcggtcata cgaataccca ttaccgcttc cagacgatat tttcgctaag ctagcccaaa      2100
     gcagattctt tagcaaaatc gacctttcag acgccttttt acaggtcgaa attgatgcca      2160
     aataccgacc cttgctaacc ataaatacac atcgcggctt atattattac aatcgcctgc      2220
     cgcccggcat caaaatagct cctgcagcat tccagcagct aatagacacc atgcttgctg      2280
     gactaaaagg aacatccgga tatatggatg acgtaatcgt tggtggcaaa acggaacgcg      2340
     agcacgatga aaatctgctg aatctattcc gccgaataca ggaattcgga ttcactatcc      2400
     gtgcagacaa atgtgcgttc aaaatgcagc agatagagta tctgggtttc atcgtcgata      2460
     gtcgtggcct tagaccaaac ccagcaaaaa tcgacataat tcagaagctg ccaacaccaa      2520
     caaatatcag cgaggtacgt tcattcctag gcgcgatcaa ctactatgga aagttcgttt      2580
     cgaaaatgcg cgacctacga tacccgctag atatgctatt gaaagacgag agcaaatttt      2640
     tatggactcg ggaatgtgat cgagccttca gcaaatttaa ggaaattctc tcgtccgatt      2700
     tactgctgac acattatgac ccgaacgccg aaattgtggt atctgcagat gcatcagcag      2760
     ttggacttgg tgcaacaatt agccataaat acgccgatgg ctcgataaag gttgtacaac      2820
     atgcatcaag ggcgctaacg caagccgaaa caaggtacag ccaaatagac cgcgaaggtc      2880
     ttgccattat ttttgcggtc actaagttcc acaagatgct gtatggtcgt catttttgcc      2940
     tgcagacaga ccaccgtcca ctagtaagaa tcttcggcag taaaaaaggt attccggttt      3000
     acacggcaaa cagactgcaa cgattcgcac tgaccttgca gctgtatgac ttcagcatcg      3060
     agtatgttcc cactactaag ttcggtaacg ccgacatact atcgagactg ataagggaac      3120
     atgccaaacc ggaaccggag tacatcatag ccagcgccga actcgaggag gatgtaagtt      3180
     ttgtagcaac aaattccatt aatgcatttc ctcttaattt tagagacgtt gccagagcta      3240
     caaatactga cgcagtcttg aagaaggttc accagtacgt catggaaggg tggcctcgaa      3300
     acctgagcta cggtgcagac ctggcacgct ttttcaatcg aagcgaagcc ctttcttcgg      3360
     ttcgaggatg cattttgctc ggggagaggg tagtgatccc taccagatta cgcgagaaat      3420
     gtctgaagca gctacacgaa ggccatcccg ggatgcaaag gatgaaggca cttgcccgga      3480
     gttatgtata ctggcctagc ttggatgagg acatttccga gtgcgttaag acttgccatg      3540
     catgtgcggt agccgcaaaa tcgcctcctc atacgaaacc attatcctgg ccagccacta      3600
     aacagccttg ggaaagaatt cacatcgatt atgcagggcc cattaacggc gagttttatt      3660
     tggtgatagt cgacgcaaat actaaatggc cagaggttat aaaggcaaat tcaacatcga      3720
     ccgctggaac aattgctata ttaagaggcg tatttgctcg ttttggtttc cccattacac      3780
     ttgtgagcga taacgggccg cagttttcga gtactgcatt taccgattac tgttgtagca      3840
     aaggcataca acatgttaca agcccaccgt ttcatccaca gtcgaatggg caagcagaac      3900
     gtttcgtcga cacctttaaa cggtcggtca aaaagataga agaaggtgga gcgtcccacg      3960
     gagaagctct cgatattttc ctccaagcgt accgatcaac gcccaacgcc gctctcgaaa      4020
     accatcgctc gcctgcagag gcaatgttta atcgaaaaat aagaacagcg atggaactgc      4080
     taaagcctcc gccgaccact gaaacgctgc ctgaggaaca tggtcggggc ttcaagagtg      4140
     gtgattgcgt ttacgcgaag tggtattcgc gcaactcttg gaaatgggtt cccgcgcagg      4200
     ttgttcgcat tatagggaat gtgatatatg aggttaagac ggatgacggc cgtatgcatc      4260
     gccgtcacgt aaaccagctg cggaaacggg acatcggcag ttcagagcaa tcaactaatc      4320
     tcgcggctcg tacgcaattg ccgctagatc tgctcatcga aggaccaaga gatgtcgtgc      4380
     cagttgagca ccctacagtg atatcctcac cgctcctacc atcatcatcc gacggggtcc      4440
     gtggtatgac ctcctcaccg ccgttaccat ctccacgacc agtacctgtc caacgaagaa      4500
     gacgtcagca gccggtacaa tcgccacgcc ggtccaacag gtccagacga ttcccgcgta      4560
     ggcttgatgg gtacctgctg caataaaaag ggggaga                               4597
//
ID   GYPSY57-LTR_AG repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY57-LTR_AG is an LTR of retrotransposon GYPSY57_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY57_AG; GYPSY57-I_AG; GYPSY57-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-296
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY57_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 154-154 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY57-LTR is a long terminal repeat of GYPSY57_AG (its
CC   internal portion is deposited as GYPSY57-I_AG).
XX
SQ   Sequence 296 BP; 85 A; 58 C; 84 G; 69 T; 0 other;
     tgttatgggc caacctgatg atcccgtaga tcgctaccga ggacactcat cgggcgtaga        60
     tcgaagtgtg tgtgcgatct atcgggaggt cagcgaacgc gcgctcggca cgatgcgtga       120
     gtgccgatcg aggggaaaga tatggcgcgc gcttgagaaa ggtcgtggaa caaagtggtg       180
     gcaaaattgt ttacgagtta ttaataataa acaaggactt tccaatccca tcgttttgaa       240
     ggaagtaacg cgttaacgtt tcttagcgtt cttcgaaaga aaacgaaaat ataaca           296
//
ID   GYPSY58-I_AG repbase;    DNA;    INV; 4564 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY58-I_AG is an internal portion of retrotransposon GYPSY58_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY58-I_AG; GYPSY58-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY58_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4564
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY58_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 155-155 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY58_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY58-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 425-aa
CC   GYPSY58_AG1p gag-like polyprotein (pos. 121-1395) and the
CC   1084?aa GYPSY58_AG2p pol-like polyprotein (pos. 1296-4547).
CC   The sequence of the LTRs flanking GYPSY58-I_AG is deposited as
CC   GYPSY58-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..1395
FT                 /product="GYPSY58_AG1p"
FT                 /translation="MSTSENGASDFPMEGEQRRSSLLRSTGFATGQQIFPP
FT                 ANENVVPTVNLPSQNAAGQPSLQHFAASSSVPAQSPDSAMLMQMMQLMQQQ
FT                 MQQQQQQVQQQMQQQQQLITQVLQQSQVTNQQSQAFPTQVIAPSNPELIID
FT                 ALSGSITEFRYEAESEITFDTWFARYEDLFAQDASRLDDAAKVRLLVRKLG
FT                 PAEHARYASFILPSVPREIPFDETVKKLKALFGRAETLVSKRYKCLQLTKS
FT                 RTEDFVSFVCRVNRSCVNFQLSAMSEEQFKCLILVCGLKDDADADVRTRLL
FT                 SRIEERTDVTLEQLSAECERISSLKVDSAMIATQAEEQILALRSRSNAQQQ
FT                 ASKWKQRKQYQHTRNSDNVNKPPGPCWLCGEAHWASECSYALHKCRDCNVT
FT                 GHREGFCNQQKRGNKKGKYKKKNARRWTCVR"
FT   CDS           1296..4547
FT                 /product="GYPSY58_AG2p"
FT                 /translation="RNRSPRRFLQPAEKRQQKGEVQEKKRTSVDMRTVTVN
FT                 VCNVQQARKFVNIFINSNRVRLQLDTGSDITVIGRETWQQLGKPTLKPVTV
FT                 HAKTASGSRLELDGEFEAQITIGDRTRSAVIRVMDSALHLLGADMIATFEL
FT                 GAVPMDQFCNKVEAEGVKWESRFPALFKGNGLCTKANVQIQLKPNHRSVFC
FT                 PKRPVAYAMRATVDKELDRLEDLGVITPVDYSDWAAPIVVVRKQNGSVRIC
FT                 GDYSTGLNAALQSYEYPLPLPEDIFAKLAQCKYFSKIDLTDAFLQVQIKEE
FT                 YRPLLTINTHRGLYHYNRLPPGIKIAPAAFQQLIDAMLSGLKCTSGYMDDV
FT                 VVGGKTEREHDENLLNLFRRIKEYGFTIRAEKCSFKMPRIEYLGFVIDRQG
FT                 LRPNPAKIDAILKMPAPTNVSEVRSFLGAVNYYGKFVPKMRELRYPLDALL
FT                 KNDTKFVWTRECANAFNRFKDLLASDLLLTHYDPNAEIVVSADASSVGLGA
FT                 TISHRYADGSLKVVQHASRALTKAEANYSQIDREGLAIIFAVKKFHKMLFG
FT                 RHFRLQTDHRPLLRIFGSHKGIPVYTANRLQRFALQLLMYDFTIEYVQTDK
FT                 FGNADVLSRLIHEHAKPDPEYIIASAELENDVSSIASYCINIFPLNFRDVA
FT                 KATESDPVLKKVYGYIMEGWPQNVAYAAELACFYHRSEALTTVRGCILFGE
FT                 RVVIPSKLQQRCLKQLHEGHPGIQRMKSKARSYVYWPSVDKDITEHVKGCH
FT                 ACAIAAKTSPREKPVPWPATQKPWERIHIDFAGPIDGDYFLIVVDAFTKWP
FT                 EVIRTRSTTSAATIAILRSIFARFGYPETMVSDNGPQFVSAEFSEYCSSRG
FT                 IQHVTTAPFHPQSNGQAERFVDTFKRSMRKIQEGGTTQDEALDVFLASYRS
FT                 TPNAILPDMQSPAEAMLGRKMRTALELLKPPPAAQAEPANLDRRFQRGDLV
FT                 YAKFYARNSWKWVPAQIIRELGSVMFEVQTNNQRVHRRHVNQLRKRDSAVG
FT                 ASSEDVDIDHLPFDLLTDSAVAESSSVPLTDHQTSASPTQPSPRPIPFATT
FT                 KRQQPIRSPRRSSRLRRLPRRLEGYRL"
XX
SQ   Sequence 4564 BP; 1225 A; 1078 C; 1251 G; 1010 T; 0 other;
     gtggcgacga gtaaaaaaaa aagcgacgta aaaaaaaaag gatttttttt attgcatttc        60
     gactgtgagt gaagttgtgc tgttcgaaaa attacgcgcc cgcgagcaaa acgcagaagg       120
     atgagcacca gcgaaaacgg tgcatcggat ttccccatgg aaggagagca gcgaagatca       180
     tccttgctgc gttcgactgg ttttgctacg ggacagcaaa tttttccacc cgcgaacgag       240
     aatgttgtgc caacggtgaa tctgccatcg cagaatgcag cggggcagcc atcgctacag       300
     cattttgctg cgtcatcatc agtgccggcg cagtcacccg attctgcgat gctgatgcag       360
     atgatgcagt taatgcaaca gcagatgcag cagcagcagc agcaggtgca gcaacagatg       420
     cagcaacagc agcaactaat cacgcaagta ttgcagcagt cacaagttac aaaccagcaa       480
     agccaggcct tcccgacgca ggtcattgcc cccagtaatc cggagttgat tattgatgcg       540
     ttgtcgggta gcatcaccga gttccggtac gaggcggaat ccgaaataac tttcgatacg       600
     tggttcgcgc gctacgagga cctgttcgca caggatgcct cccgcctcga cgatgcagca       660
     aaggtgcgct tactggtgcg caagttaggc cctgcggagc acgcacgcta cgctagtttc       720
     atcctgccca gcgttcctcg ggagataccg ttcgatgaaa cggtgaaaaa gctgaaggcc       780
     ctttttggga gagctgaaac gcttgtgagt aagcgctaca agtgtttgca gctaacgaaa       840
     tctcgtacgg aggatttcgt gtcgtttgtt tgccgcgtga accgctcctg cgtcaacttt       900
     cagctgtccg caatgagcga ggagcagttc aaatgcctga tattagtgtg cggcttaaag       960
     gatgatgctg atgcggacgt gcgcacgaga cttctctctc gtatcgagga gagaaccgac      1020
     gtcacgctag agcagctctc cgctgagtgt gagcgaatct ccagcttgaa ggtggatagc      1080
     gccatgatcg ctactcaggc ggaggagcaa atcctagcac taagaagtag aagcaatgca      1140
     caacagcagg cgagcaagtg gaaacaaaga aagcagtacc agcatacgag gaacagtgat      1200
     aatgtaaaca aaccacctgg gccgtgttgg ttatgtggtg aggctcattg ggcaagtgag      1260
     tgctcatatg ctctgcacaa gtgtcgcgat tgtaacgtaa ccggtcaccg agaaggtttt      1320
     tgcaaccagc agaaaagagg caacaaaaag gggaagtaca agaaaaaaaa cgcacgtcgg      1380
     tggacatgcg tacggtgacg gtcaatgttt gtaatgtcca gcaagctaga aaatttgtta      1440
     acattttcat caacagtaac agggtccgcc tgcagcttga cactggatcg gatattacag      1500
     taatcggacg agaaacgtgg cagcagctgg gtaagccaac actgaagccg gtaacagtcc      1560
     acgcaaaaac agcatctggg tcccgccttg aattggatgg tgaattcgag gcacagataa      1620
     cgatcggtga cagaacgcgg tctgctgtta tacgcgttat ggactcggcc ttgcatcttt      1680
     tgggggccga tatgatagca acgttcgagc tcggtgccgt ccccatggac cagttttgca      1740
     acaaggtgga agcagaggga gtgaaatggg agagccgatt ccctgcattg tttaaaggca      1800
     acggattgtg caccaaggcg aatgtacaga ttcagctcaa gccaaatcac cgttctgtgt      1860
     tttgtcctaa gcgcccggta gcgtacgcga tgcgagcaac ggtggacaag gagctcgatc      1920
     gcttagagga tctaggggtg attactccgg tggattattc ggactgggcg gccccaattg      1980
     tggtggtgag gaagcagaac ggcagcgtgc ggatttgtgg agattattca actgggttga      2040
     atgcagctct tcaatcgtac gaatatccac tcccactccc agaggatatt tttgcaaaac      2100
     tggcacaatg caagtatttt tcaaaaattg atctaacgga tgcattcttg caggtacaaa      2160
     ttaaagagga atatcgtcca ctcctgacga ttaacacgca tcgcggattg taccattaca      2220
     accgtctacc acctggcatt aaaattgctc cagccgcgtt ccagcaactc atcgatgcaa      2280
     tgctctccgg cctaaaatgt acatctgggt acatggatga tgtagttgtt ggaggcaaaa      2340
     cagaacgcga gcacgatgag aatttgctca accttttccg gcgcataaag gagtacggat      2400
     ttacaatccg agcggaaaag tgttcgttta aaatgccaag gatagagtac ctgggttttg      2460
     ttatcgacag acagggtctc agaccaaacc cagcgaaaat agatgcgatc ctgaagatgc      2520
     cagcaccgac gaacgttagt gaggttcggt cctttctggg tgctgtgaat tattacggca      2580
     aatttgtacc aaagatgcga gaattgcgat acccgctgga tgcattgctc aaaaatgaca      2640
     ccaaatttgt ttggacacgg gagtgcgcaa atgcttttaa caggttcaaa gacctgttag      2700
     catccgactt gctgctgacg cactacgacc cgaatgcaga gatagtggtc tctgccgatg      2760
     catcgtcggt tggactaggc gcgaccataa gccacaggta cgcggatggc tcgctgaagg      2820
     ttgttcagca cgcatcgaga gcccttacga aggctgaagc aaattacagc caaattgacc      2880
     gcgaaggttt ggcgattata tttgctgtga aaaagtttca taagatgctg tttgggcgcc      2940
     acttccgact gcaaaccgat catcgaccct tgttgcggat tttcgggtca cataagggta      3000
     taccagtgta cacggcaaat aggttgcagc ggtttgcatt gcagttgctg atgtatgatt      3060
     ttaccatcga gtacgtgcaa accgataagt ttggcaatgc ggacgtgctc tcaaggctga      3120
     tacacgagca cgcaaaaccg gatccggaat acataatcgc aagcgctgag ttggaaaatg      3180
     atgtaagttc catagcatca tactgtatta atatatttcc actcaatttt agagacgttg      3240
     cgaaggccac ggagtccgac cctgtcctga agaaggttta cggatacatc atggaagggt      3300
     ggccccaaaa tgtcgcgtat gctgcagagc tggcttgctt ttaccacaga agcgaagccc      3360
     taaccacggt gcgtggttgc attttgtttg gggaaagagt ggtgatccct agcaagctgc      3420
     agcagcgttg cttgaagcaa ctacatgaag ggcaccccgg tatccagcga atgaagtcga      3480
     aggcccggag ttacgtgtac tggccatccg ttgataagga cataacggag cacgtaaagg      3540
     gatgccatgc ttgtgcgata gcggcaaaga cttcacctcg cgaaaaacct gttccctggc      3600
     cagcgacaca gaaaccttgg gaacgtattc acatcgattt cgctgggcca atcgatggtg      3660
     actattttct gatcgtggta gacgcgttta ccaagtggcc agaggtgata cgaacgcgaa      3720
     gtaccacatc agcagcaacg atcgcgatac tgaggtcaat ctttgcgaga tttggatacc      3780
     cggaaacgat ggtgagcgac aacgggccac aatttgtcag tgctgagttt tcggagtatt      3840
     gcagtagtcg cggtatacag cacgtcacaa ctgcgccatt ccatccgcaa tcgaatgggc      3900
     aggcggagcg ctttgttgac accttcaagc ggtcgatgag gaagatccag gaagggggaa      3960
     caacgcagga cgaagcgctt gacgtttttc tggcgagcta ccggtcaact cccaacgcta      4020
     ttttgccgga catgcagtcg ccagctgaag ccatgctagg cagaaaaatg cgaacagcgt      4080
     tggaattgct gaaacctcca cctgcagcgc aagcagaacc ggccaacttg gatagacgat      4140
     ttcagcgcgg tgacctcgtc tacgccaagt tctatgcgcg gaattcatgg aagtgggttc      4200
     cggcgcaaat catacgagag ttgggcagcg ttatgttcga ggtgcagacg aacaatcaac      4260
     gggttcacag gcgccatgtg aaccagctgc gaaaacgtga ttcggccgtg ggggcttcca      4320
     gcgaggacgt ggacatagat catttgccgt ttgatctgct gacggacagc gcggtagcgg      4380
     aatcgagttc tgttcccttg acggaccatc aaactagcgc gtcacccaca caaccatctc      4440
     cacgcccaat cccgttcgct actacaaaac gccagcagcc gatacggtcg ccacgccggt      4500
     cttctaggct tagaagactt ccgcgtaggc tcgaggggta tcgtctgtaa ttaaaagggg      4560
     gaga                                                                   4564
//
ID   GYPSY58-LTR_AG repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY58-LTR_AG is an LTR of retrotransposon GYPSY58_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY58_AG; GYPSY58-I_AG; GYPSY58-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-289
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY58_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 156-156 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY58-LTR is a long terminal repeat of GYPSY58_AG (its
CC   internal portion is deposited as GYPSY58-I_AG).
XX
SQ   Sequence 289 BP; 83 A; 69 C; 74 G; 63 T; 0 other;
     tgttgtgagc taacctggcc cggactcatt cacggcggta actcacggat gacagcaaag        60
     cgtcatccgt caatgtatgc gtgtgatcga tccgggggtc atcggttgcg cggtcacgga       120
     cgttgaccgc caaacaccag cgcgcactga agaactagcg gtcagcaagg aagcgtgctc       180
     gaagccaaca ccaaattgta accaagtgaa gttgaatata tacgttagta aatttattag       240
     taacgcgtga gttttattcg accacctctg cgatcgaaag aacataaaa                   289
//
ID   GYPSY59-I_AG repbase;    DNA;    INV; 4552 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   27-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY59-I_AG is an internal portion of retrotransposon GYPSY59_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY59-I_AG; GYPSY59-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY59_AG; mag lineage; reverse transcriptase.
XX
NM   GYPSY59-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4552
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY59_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 157-157 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY59_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY59-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1482-aa
CC   GYPSY59_AGP gag-pol like polyprotein (pos. 93-4538). The
CC   sequence of the LTRs flanking GYPSY59-I is deposited as
CC   GYPSY59-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           93..4538
FT                 /product="GYPSY59_AGP"
FT                 /note="gag-pol like"
FT                 /translation="MEQADANQMDIFADVDPRRLSQNRASVPGVSMPNFAH
FT                 REGASVVPPMIIQPPSQPTSTPSQSTSTPSLNNASPAIISSADSATMLQMM
FT                 NLLQQQMTQQQQLLKDFLHARMPSQCAPPTTLQPEQIIDTLSHHISEFQYN
FT                 KETGITFKSWFSRYLDLFQKDAARIDDAAKVRLLLRKLGPSEHDRYLSFIM
FT                 PSRPPDFSLEQTVEKLTCLFDTQESLLSKRFKCLQIMKTRTEDHLSYACRI
FT                 NKACVEFELKKLNEEEFKCLLYVCGLKDEIDADIRTRLLARIEDKACVTLQ
FT                 QLSSECHRLINLKKDSAMIEAPVPERVLAVNTKMHRAPRQFQPKRDNPTTP
FT                 CWSCGGLHWSRDCPYKQHRCTTCSRTGHKEGYCNTIRSRKPGKRPWKQRKT
FT                 QLRMVTVNVQSVQQRRRFVSLTMNGTPVRMQLDTASDITVIDHTTWKLIGS
FT                 PQLAAPSVIARTASGANLSLEGEFPCTVEVNGQAKQTVIRVSKSRLLLLGA
FT                 DVIDAFALWSVPMDSFCCHVTGTSTTPKQWQERFPTVFQGIGLCKKAGVTL
FT                 TLKDNCRPVFRPKRPVAYAMQEPVNLELDRLEKLGIITPVKFSEWAAPVVV
FT                 VKKANGKIRLCGDYSTGLNEALRPHDYPLPLPEDIFSRLSNCTMFSKIDLT
FT                 DAFLQVEIDPQYRPLLTINTHRGLYHYNRLPPGIKVAPAAFQQLMDTMLAG
FT                 LKGVSGYLDDIIVGGSSEHEHDTNLAEVLHRLQEYGFTIRADKCAFKQQKI
FT                 TYLGHVIDSHGLRPDPSKIELIKKLPEPKDISGVRSFLGAINYYGKFIPNM
FT                 RKLRYPLDNLLKANNSFCWTPECKKSFATFKSLLSSDLLLTHYDPRQKIIV
FT                 SADASSIGLGATISHVYPGGAMRVIQHASRALSEAERHYSQIDREGLAIIF
FT                 AVKKFHKMIFGRRFVLQTDHRPLLHIFGSKKGIPTVTANRLQRFALTLLAY
FT                 DFSIEYVRTDDFGNADLLSRLINTQAKPEEDTVIACIETDIKAMVVSALHN
FT                 TPLHFADLIRETRKDPLLQKLVHYIREGWPSNATYTGELSRFFARKDALST
FT                 VDGCILFGERVVIPRVLQQQCLQQIHHGHPGIQRMKALARSYLYWPSLDAD
FT                 ITEWVKTCNACQAVARSPPHSSPVPWPKAAGPWQRIHVDYAGPLDGDFYLI
FT                 VVDSFTKWPEVFRTSSTTSAATIGILRGIFARFGVPTTLVSDNGTQFTSED
FT                 FKFFCFQNGIEHITTAPYHPQSNGQAERFVDTFKRTVKKISADGRTMQEAL
FT                 DAFLLSYRSTPSSVLEGLKSPAEIMFGRPMRTTLDLLRPPLAGGLTDSPVA
FT                 AKRREFRPSDLVYVKCYSRNGWSWTAGTIVSRIGNVMYTVRTVDRKTIRSH
FT                 VNQLRERRERHHHRHRESSESDGLPLDILLDSYHLTPQPTTSTAEPSSASL
FT                 QHTTSTHTSVSSASHPQTSAVIDPRTASNAEPLHPTNSPIPVQAPTREPRR
FT                 FSRHRRPPSRFDPYRRF"
XX
SQ   Sequence 4552 BP; 1264 A; 1186 C; 1071 G; 1031 T; 0 other;
     gtggcgacga ggacaattta ctttaacgtg tgttcagttt aacgtgtgca agtgtatcaa        60
     acataggacc accgtgtcgc aagcgtcgta agatggagca agccgacgca aaccagatgg       120
     atatttttgc ggacgttgac ccacgccgat tatcccaaaa tcgtgccagc gtaccaggcg       180
     tgtctatgcc aaatttcgcg catcgagaag gagcatcagt agtaccgccg atgataatcc       240
     agccgccatc gcagcctacg tcgacgccat cgcagtctac gtcgacgcca tcgctaaaca       300
     atgcgtcacc agccatcatt agcagcgcgg atagtgcaac gatgctgcaa atgatgaatt       360
     tgcttcaaca gcaaatgaca cagcagcagc agctgcttaa agattttctt cacgcgcgca       420
     tgccgagcca atgcgcccca cccaccacct tgcagcctga acaaataatt gatactctgt       480
     ctcaccacat ttcagagttt caatacaaca aggagactgg tataaccttc aaaagctggt       540
     tttcacgcta tctcgacctg ttccagaagg acgcggcaag gatcgacgac gcagccaaag       600
     tgcgattgtt gctgcgcaaa ctgggaccat ccgagcacga tcgctactta agcttcatca       660
     tgccgagccg cccgccggat ttttcactcg agcagactgt ggaaaaactt acatgcctgt       720
     tcgacaccca agaatcgctg ctgagcaagc ggttcaaatg cttgcagatc atgaagacgc       780
     ggaccgagga tcatctcagc tatgcgtgtc gaattaacaa ggcgtgtgtc gagttcgagc       840
     tgaagaagtt gaacgaggaa gagttcaagt gtttgctgta cgtgtgcggg ttgaaagacg       900
     agatcgacgc agacatcagg acgcgactgc tagcccgcat tgaggataag gcctgcgtga       960
     ccttgcaaca gctttcttca gagtgccatc ggttaatcaa cctgaaaaag gatagcgcaa      1020
     tgatcgaggc accggtacca gagcgtgttc tagcagtaaa cacaaaaatg catcgcgcac      1080
     cacgtcagtt ccaacccaag cgcgacaatc ctactacccc gtgttggtcg tgcggaggac      1140
     tgcattggag ccgcgattgc ccgtacaagc aacaccgatg cacaacttgt tcccggacgg      1200
     gccacaaaga aggctattgc aacaccataa gatcccgtaa gcccggcaaa cgcccctgga      1260
     agcagcgtaa aacacaatta aggatggtga cagtgaacgt ccagagtgta cagcaacggc      1320
     gcagattcgt gtcacttacg atgaatggta caccggttcg tatgcagttg gacacggctt      1380
     ccgacattac tgtgatagat cacacaacgt ggaagctcat tggcagtccc cagttagcag      1440
     caccatccgt aatcgctaga accgcctcag gtgctaacct atccctggaa ggagagttcc      1500
     cgtgcactgt cgaagtgaat ggacaggcaa agcaaaccgt gattcgcgtc tctaaatcgc      1560
     gtttgttact tttaggtgct gatgttatcg acgcgtttgc tctatggtcg gttccgatgg      1620
     acagtttttg ctgccacgtt acaggtacgt ctaccacgcc gaagcaatgg caagaacggt      1680
     tcccaacagt ctttcaagga ataggcctat gtaaaaaggc aggggttacc ttgacgctga      1740
     aagacaactg ccgtccagtc tttcgtccaa aaagacccgt tgcatacgct atgcaagagc      1800
     ctgtaaatct agagcttgat aggctagaaa agttgggtat aataacacct gtaaagtttt      1860
     ctgaatgggc agcaccggta gtagtggtta agaaggcaaa cgggaaaatt cggctatgtg      1920
     gcgattattc cactgggttg aacgaagcgc taagaccaca tgattacccg ttaccacttc      1980
     cagaggacat attttcaagg ctgtccaact gcaccatgtt cagcaaaatc gacttaacgg      2040
     acgcctttct ccaagtcgaa atcgatcctc aatacagacc gctacttacc ataaatacgc      2100
     atagaggctt gtaccactac aaccgcctac cgcccggcat caaagttgct cctgctgcct      2160
     tccagcaact tatggataca atgctcgcag ggcttaaggg cgtatcagga tatcttgacg      2220
     atatcatcgt aggaggaagt agcgaacatg agcatgacac aaatttggca gaagtattac      2280
     acaggcttca agaatatgga tttacgatac gagccgataa atgtgctttt aaacagcaga      2340
     aaatcacgta ccttggacac gtgatcgata gccacgggtt acgaccagat ccgtcaaaaa      2400
     tcgagcttat aaagaagctc cctgaaccga aagacatatc cggtgtgaga tcatttctgg      2460
     gagcaattaa ctattacggg aagttcatcc cgaatatgag gaagctgcga tatccgttag      2520
     acaatttgct taaggcaaat aattcattct gctggacgcc agaatgcaaa aagtcgttcg      2580
     caacgttcaa gtctctccta tcgtccgacc tacttctaac gcactatgat ccacggcaga      2640
     agataatcgt ttctgcagat gcttcgtcca tcggccttgg cgcaacgatt agccacgtgt      2700
     atcctggagg tgcaatgcgc gtaattcaac atgcttcccg cgccctcagt gaagcagagc      2760
     gtcattacag ccaaatcgat cgcgaaggct tggctatcat cttcgctgta aaaaagtttc      2820
     ataaaatgat cttcggcagg cgttttgttc ttcaaacgga ccatcgacct cttcttcata      2880
     ttttcggctc gaagaagggt atcccgaccg tcaccgcaaa ccgtttgcag cgtttcgcac      2940
     tcactcttct agcgtatgat ttcagcatag agtatgtacg caccgatgac ttcggaaacg      3000
     ctgacttgct ttcgcgcctg atcaacacac aagccaaacc tgaagaagac accgtgatcg      3060
     catgcataga aacagacatc aaagcaatgg tggtaagtgc gcttcataac actccacttc      3120
     attttgcaga ccttatcaga gaaacacgga aagaccccct actgcaaaag ctcgtgcatt      3180
     acatacgtga aggatggccc agtaatgcaa cctacacagg ggaattgtct cgtttctttg      3240
     cacgtaagga tgctttatca accgttgatg gttgtatttt gttcggggag agggtggtga      3300
     ttcctcgagt tctacaacag caatgtctgc aacaaataca ccacggtcat cctggcatac      3360
     aacggatgaa agcattggcc agaagctacc tttattggcc atccttggac gctgacatca      3420
     cagaatgggt caaaacatgt aacgcgtgcc aagcagttgc acgatcaccc cctcactcaa      3480
     gccccgttcc ttggccaaaa gctgcaggtc catggcagcg cattcatgtg gactatgctg      3540
     gtccactaga tggagatttc tacctcatcg tagtagattc gttcacgaaa tggcctgaag      3600
     tatttcgaac gagcagcact acatccgcag caaccatcgg catcttacgc ggaatattcg      3660
     cccggttcgg tgttccaacc actctagtat ctgataacgg tacgcagttt acgagcgaag      3720
     attttaagtt tttttgcttc cagaacggca tcgagcacat aacgacggca ccctatcatc      3780
     cgcagtctaa cgggcaggct gaaaggttcg ttgatacttt caagcggacc gttaagaaaa      3840
     tatcagccga tgggagaacg atgcaagagg cgctggatgc attcctactg tcctaccgaa      3900
     gtactccgag ctccgtgtta gaagggctaa aatcaccagc ggagataatg tttggcagac      3960
     caatgcgtac aaccttagac ctattacgtc caccactcgc aggagggtta acagacagtc      4020
     cagtagcagc taaacgcagg gaatttcgcc cgtccgacct ggtatatgtt aagtgttact      4080
     ctcgcaacgg ttggagttgg acagctggga ccattgttag ccgcattgga aacgtaatgt      4140
     acaccgtcag gacagtcgat agaaagacca taagaagcca cgtgaaccag ctgcgcgagc      4200
     gccgtgaacg tcatcatcat cgtcatcgtg aatcatcgga gtctgacggt ttaccgctag      4260
     atattctttt ggattcctac caccttactc cgcaaccgac gacatcaaca gccgaaccat      4320
     catcagcatc gctacagcat actacatcta cacacacgag cgtatcgtct gcatcacacc      4380
     cacaaacgtc agcagtcatc gatccgcgta cggcctcaaa cgcggaaccg ctgcatccaa      4440
     cgaattcccc aattccggta caagctccaa cccgagaacc acgtcgcttt tctaggcata      4500
     gaagaccgcc cagtaggttc gacccgtaca ggcgttttta aaagagggga ga              4552
//
ID   GYPSY59-LTR_AG repbase;    DNA;    INV; 288 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY59-LTR_AG is an LTR of retrotransposon GYPSY59_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY59_AG; GYPSY59-I_AG; GYPSY59-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-288
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY59_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 158-158 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY59-LTR is a long terminal repeat of GYPSY59_AG (its
CC   internal portion is deposited as GYPSY59-I_AG).
XX
SQ   Sequence 288 BP; 67 A; 62 C; 78 G; 81 T; 0 other;
     tgttgggtgc gtacgtgcag ggtactcacg cgccctctct gcgagatgtt ttctctcgtc        60
     ggttgatggg cacgagtgtc ctagcgagag attcgtcccg atccgcgatc ccgattgtta       120
     ctcgttacac gatcgggatg cgagcggcag tcgggataca gctagcaacg aatgtggtgt       180
     ggtgtcagta acaaggcgga aataaattaa gtttatttat tgtagtttat ctaatttacg       240
     ttgtgtcgta aacacttatt cggccacata tcacacggca acgtaaaa                    288
//
ID   GYPSY5_I    repbase;    DNA;    INV; 7453 BP.
XX
AC   .
XX
DT   27-SEP-2000 (Rel. 5.08, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY5_LTR; GYPSY5_I.
XX
NM   GYPSY5_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7453
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY5_I.";
RL   Direct Submission to Repbase Update (31-AUG-2000).
XX
RN   [2]
RP   1-7453
RA   Bao W.;
RT   "Sequence updated with consensus.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
CC   GYPSY5's long terminal repeat LTR is listed in Repbase Update as
CC   GYPSY5_LTR. Presumably, GYPSY5 can be still an active retrovirus
CC   since it is flanked by 100% identical LTRs. Target site
CC   duplication is 4 bp-long (CCAG).
CC   GYPSY5 belongs to the same group of GYPSY-like retroviruses
CC   together
CC   with ZAM, ACCORD, TIRANT and QUASIMODO retroviruses.
CC   [2]: Updated with consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1226..2380
FT                 /product="GYPSY5_I_1p"
FT                 /note="gag."
FT                 /translation="MSKLAKVKKLIPATRSSTRLSASLSDVREDQVALPPR
FT                 IRPSSSSAPSTMTSSSETSNFSSPPPPISPQDICLSLKIPDGIRDLTPYDG
FT                 DPTTLNEFINNIEEILLLIRGTDKTPYGQFLLRAIKNKIEGKAKALLLSLG
FT                 IGLNWDDIKEALIGKFADKRSEETLNFELHGLVHKRLPLQEFYERILDIQA
FT                 TYGRTMENMGIETAALNLKKESFEKTCLYTFIHGIKGPLGSTVRAFRPRSL
FT                 QEAYDVAIKERDIFMRENWSRQTQSSRSNNYNYNGRDYRRNDEHRVEKYNK
FT                 KSEFDRNIRSRDQRGSYSKPRDNDRNFNKMRAIMPKEEDRKRYDRDNNYSR
FT                 NHGNPGQQRQTLNNIETAGVQELHNIDDKNFQLKASSDRRDT"
FT   CDS           5892..7451
FT                 /product="GYPSY5_I_3p"
FT                 /note="env."
FT                 /translation="MTAAQLLHVQHVKENTPLAEIKLGEARTIKTYSSVAH
FT                 VIELTELKNNLNKLESSLQNLQDEDSNDSITPIQRKIDQAREKIYSLTPNR
FT                 REKRGLIDGLGNVIKKVTGNMDAEDAAKIETKFKQVFENEENINKNLGQQI
FT                 SYNNDIIVNFNNMSDHFYKEQEKIERYINNFKNGISKELIVEDKKIRILQI
FT                 LNIINNNIDILQNHIHDIAESILLAKFKIIPNFILPIQELKDIAQIFKLQN
FT                 FSINSEEHIYRLLNIEIESKKTKIIFHIKIPIFDKYTYTLSHLIKLPINGT
FT                 NFLTLPKYILYDDKFNYMLSFQEKCSRIHGTYICDPGTAESNMDNRECVKQ
FT                 VLQGMNPVCEAKIINTDEAVVEPEQQWIVIISKNQLRAEPSCAEPFTIEGT
FT                 TIINHINCSIFIDGTKYDDSELFYQERIKLSLPVTKNISINATSEDLSLSK
FT                 IVLHLQENKAKIFQVKESTINLRFITYASSIILVIFILYALAVRRNTTYLP
FT                 NPVTSVNYVPSIPSLWPSLYSRGG"
FT   CDS           2341..5859
FT                 /product="GYPSY5_I_2p"
FT                 /note="pol."
FT                 /translation="KFSIKSLVGQTGYLEKFKVGGSLLYILINFGPTSPLK
FT                 FLVDTGATSSFINPELIEEHNQQTLNTPILITTALGSHKVNKIAKIKLFTK
FT                 HNCNDTFPLLLFKFHNYFDGLIGMNTLNKILGVIDIPSKILSTPKFNFELL
FT                 QQVKQKAELFNIEEASKILVMLPVTIKEGTFLFEDQKVSGNLFITGGLYTA
FT                 HNYYSCMEVVNYSKKQEKLYLETPIEVNHFNTDEFYIVNDIKDYGTINSEK
FT                 EKEKFSTLRLELLNSEETTAFKKLCKQFPNIFYKEGDKLTFTNRVKHSIKT
FT                 TDEIPVHKRPFRYSPAEKTEITDQINKLLEQDIIRHSHSPWSAPVFLVPKK
FT                 LDASNKKKWRLVVDFRQLNDKTIKDRYPMPNINEILDKLGRAQYFSALDLA
FT                 SGYHQIEVEPKDRSKTAFSAVGGHFEFIRMPFGLSNAPATFQRVMDNVLAE
FT                 FNGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLANLKLQPDKSEFLKK
FT                 ELEYLGHIVTEKGVKPNPKKIETIKAFPMPKTRKEIKSFLGLLGYYRRFIR
FT                 DFAKITKPLTQQLKGKSDVTIDDNYIKTFEFCKTLLCNDPILQYPDFTKSF
FT                 ILTTDASNVAIGAVLSQGTVGNDRPIAYASRTLSESETHYATIKKELLAIV
FT                 WAVKYFRPYLFGNKFLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCEV
FT                 IYKKGSQNVVADALSRIVVELNTNEARPITSDTEILTSNRPINEFAIQIIL
FT                 KIADCANDLLETPFKNKLRRIISRPLFDDQTMIDVLKTALRSNKTHAIYTT
FT                 DTIFESVQKIYAAFFAPSKSYKIIRCTTYLDELRTPEEQVEYISDYHIKNN
FT                 HRGIDETVSHIKRQIYFPCLKERVSQLINKCDICQTLKYDRQPQKPIFQLT
FT                 ETPNKPLDIVHIDLYSINNKTILTIIDKFSKFAEGYTIPSRDSINITKHMM
FT                 FFFKTHGIPKTIVCDQGPEFAGIIFKELCNQYNITLHVTSFQQSSSNAPVE
FT                 RLHSSLTEIYRIIFEKKKALKLNLDHDCILTETFITYNNAIHSSTKLTPYE
FT                 VFTGRTHIFEQNYKAVSQQDYMRELESYKNNLYVEVKEEFEXQKLNKILKL
FT                 NEDRVLPIAVQEGDTVFRKENRRNKLTPRFTQHKVADDNGVTFTTNKRQKI
FT                 HKSKIKKRIRQNSR"
XX
SQ   Sequence 7453 BP; 2889 A; 1362 C; 1266 G; 1935 T; 1 other;
     ggcgcagtcg gaaactggac ctgatgcagc tccttttcat cacaattgta cttaagtgag        60
     tagagtgaga gaataaagaa taataaaatg ccaatacaca aaatgaattg ccacaacaca       120
     caaaatacac aacaaataaa taagcgagtt aaaaagatgc aatcatattt aatgaaaatt       180
     acataactaa agaaattttt ataaaagaag aaattaaata tctaatcatg taaaagttca       240
     aatagaacaa ttatagtgat taaacaaaat ataaaaatct tggtaaaatg atttagacaa       300
     atcagaaaat attaaaaata tatttatgtt gtgaatcaga atatacaagt gagtgattga       360
     ggctcgtatg ttggagcgta gttagtggat cgcgtcaaac ttgtgtgaaa gttggcctca       420
     gcggttgggt tgatgtttga acagatcgct gacggtttaa ttcaaattcg aaggcaactc       480
     aacagcgacg atacactggc gtgtctagcg gttgggttga tgttcgaaca agttgcgcta       540
     gttgtcaata catgtcgaga cagctcaacg gcgacgatac actggcgtgt ctagcggttg       600
     ggttgaaact cgaacaagtt gcgctagttg tcgattgcac ttcgaagaca gttcagcagt       660
     gacgatacac tggcgtgtct agttgttgga ctgatgttcg aagaggttgc actagttgtt       720
     cataaggaac aattggttcg acggcattcg tgacgtggtt gaccctcaat tattagactg       780
     attcaatcga cattggtatt cagggcgaat atccaatgcg gcaacaaaac gatccatcaa       840
     acctgtatga gataaaaaac acctacggcc tgatttaggc aaacaatcca gcaaattaag       900
     acaaaataat aatacaagaa tatatttttc ttctctctct ctcaataaag attgatataa       960
     atatgaaatt ataaacacat actaatgcat ctgtaattac agattcaaca cgaatccatc      1020
     gttcatcatc tgcaaacaaa aatattcaac acacaattaa ttaagtatac ataaaaacac      1080
     acaattaatt aagtatacat aaaaacacac aattaattaa gttcacgtac acagatatac      1140
     actattaatt aaatacatac acttaatttt tttttttaca caattacaca gaattaagaa      1200
     ttaaaggatt tctctaaaag agtaaatgtc taaacttgct aaagtaaaga agcttattcc      1260
     ggcgactaga agtagtactc gtttgagtgc gagcttatca gacgttaggg aagaccaggt      1320
     tgccctacca cccagaatta gaccttcttc gagtagtgca ccaagcacaa tgactagttc      1380
     gtcagagaca agtaactttt cttccccacc ccctccaatt tcccctcagg acatttgcct      1440
     atccctaaaa attccggatg gcattcgcga ccttactccc tatgatggag atccaactac      1500
     cctaaacgaa tttataaata atatcgagga aattcttctt ctcattagag gcacggataa      1560
     aactccgtat ggtcagttct tgttaagagc aataaaaaac aagatagaag gtaaagcaaa      1620
     ggcgttatta ttatcattag gcataggctt aaactgggat gacatcaaag aagcattaat      1680
     agggaaattc gctgacaaaa gaagcgaaga aactctaaac tttgaacttc acggacttgt      1740
     tcacaagaga ttgccactgc aggaatttta cgaacgaatt ttagacatcc aagcaactta      1800
     cggtagaacc atggaaaaca tgggaataga aacagcagca ctaaatctta aaaaggaatc      1860
     ttttgaaaaa acatgcttgt atacgtttat acacggcatt aaaggcccat tggggtctac      1920
     tgtcagagca tttagaccta ggagtctcca agaagcctat gatgtggcaa ttaaggaaag      1980
     ggatattttt atgagagaaa attggtctag acaaacacag agttcgagat caaacaatta      2040
     caattataat gggagagatt atcgtagaaa tgacgaacat cgggttgaga aatataataa      2100
     gaaatcggag ttcgaccgaa acatcagatc tagggatcaa agaggaagtt attcaaagcc      2160
     cagagacaac gacagaaatt ttaacaaaat gagggctatt atgccaaaag aagaggacag      2220
     aaaacgctat gacagagaca ataattactc acgaaatcac ggaaatccgg gacagcaaag      2280
     acagaccctt aacaatattg agacagcagg tgtacaggag ttacataata ttgatgataa      2340
     aaattttcaa ttaaaagcct cgtcggacag acgggatact tagaaaaatt taaagttgga      2400
     ggttccttat tgtacatttt aattaacttc ggtccaacca gtccactaaa atttctagtg      2460
     gacacaggtg ccacttcttc cttcattaat ccagaactta ttgaggaaca taaccaacaa      2520
     accctaaata caccaatctt aatcacaaca gcactaggct ctcataaagt aaacaagata      2580
     gccaaaataa aattatttac taaacacaac tgtaacgata cctttccgtt acttctcttc      2640
     aaatttcata attattttga cggtcttata ggcatgaaca cgttgaataa aattttagga      2700
     gtaatagata taccaagtaa aatcttatca acacccaaat tcaattttga attactgcag      2760
     caagtaaaac aaaaagctga attatttaac atagaagaag catccaagat attggtaatg      2820
     ctacccgtca caattaagga gggtacattt ttatttgaag accaaaaggt ttcaggaaat      2880
     ttgtttatta ccggaggcct gtacacggcc cacaactatt acagttgtat ggaggtggta      2940
     aactattcca agaagcaaga aaaattatac ctagaaacac caatagaggt aaatcacttt      3000
     aacacggacg aattctatat agtaaatgat attaaagact atggtacgat aaactccgaa      3060
     aaggaaaaag aaaagttcag taccctaaga ttagaacttt taaattcaga agaaacaacg      3120
     gcgttcaaaa aattatgcaa acaatttcct aatatattct acaaagaagg agacaaatta      3180
     acattcacta atagagtcaa acatagcatt aaaaccactg acgaaatacc agtacacaaa      3240
     agacctttca gatacagtcc tgcagaaaaa acagaaataa ccgaccaaat taacaaactc      3300
     ctagagcagg acataattag gcacagccat tcaccttgga gtgctccagt ttttctggtc      3360
     ccaaagaaat tggacgcttc aaataagaag aaatggagac tggttgtaga tttcagacaa      3420
     ttaaatgaca agacgatcaa agatagatac ccaatgccca acatcaatga aattctagac      3480
     aaactaggga gagctcagta tttttcggcc ctagatctag caagtggtta ccaccaaatt      3540
     gaagtggagc ctaaagatag atcgaaaaca gccttttccg cagtaggtgg tcatttcgaa      3600
     ttcatccgaa tgccattcgg cttatctaat gcacccgcaa ccttccaaag ggtgatggat      3660
     aatgtcttgg cagaattcaa tggcaaattt tgtctgattt atctcgacga cataatagta      3720
     ttctcgacgt ccttacaaga acatatcaac cacctaagct cgatcttcaa aaaactcact      3780
     ctggcaaatt taaaacttca gccagataaa tcggaattcc tcaagaagga attagaatat      3840
     cttggccaca tagtgaccga aaaaggcgtt aagccgaatc caaagaaaat tgaaactatt      3900
     aaagccttcc ctatgcctaa aaccagaaaa gaaattaagt cattcctggg gttgctgggg      3960
     tactatagaa gatttatcag agattttgcc aaaatcacta aacctctaac tcagcaactt      4020
     aaaggaaagt cagacgtgac catcgacgat aactatatta aaacatttga attttgtaaa      4080
     acactcttat gtaatgaccc catactacag tatcccgact tcactaaatc gtttatttta      4140
     acaacagatg ctagtaatgt agcaatagga gcagtgttgt cccaaggaac tgtaggaaat      4200
     gatagaccta tagcatatgc aagtaggaca ctatcggagt ccgaaacgca ttatgccacc      4260
     ataaaaaaag aattactggc aatagtgtgg gcagtgaaat attttcgacc atacttattt      4320
     ggaaacaaat ttctactggt cactgatcac aagcctttag tttggttaaa aaacctaaaa      4380
     gagcctaatt ccatgttagt gagatggaaa ctccaactct tagaatatga ctgtgaagtc      4440
     atttataaaa aaggttctca aaacgtggtg gcagatgcat taagcagaat tgttgtcgaa      4500
     ctcaacacta atgaagccag accaataacc tcagatacag aaattttaac ctctaacaga      4560
     ccaataaatg aatttgcaat tcagatcata ttaaagattg cagattgtgc aaacgactta      4620
     ttggaaacac cttttaaaaa taaactcaga cgaattattt ccagacctct gttcgacgat      4680
     cagacaatga tagacgtatt aaaaacggca ctaagatcaa ataagacgca tgcaatttat      4740
     accactgata caattttcga atcagtgcaa aaaatttatg cagcattttt cgctccaagt      4800
     aaatcatata aaattataag gtgtacaaca tatttagatg aactccgaac accagaagaa      4860
     caggtcgaat acatatctga ctaccatatc aagaacaacc ataggggcat tgacgaaacc      4920
     gttagtcata ttaaacgaca gatttatttc ccctgtttaa aagagagggt ttcccaactg      4980
     ataaacaaat gcgacatttg tcaaaccctc aaatatgata gacaacctca gaaaccaata      5040
     tttcagctaa cagaaacacc taataaacca ctagacattg tacacataga tctatactca      5100
     attaacaata aaaccatttt aacaataata gacaaatttt caaaatttgc agaaggttac      5160
     actattccat ctcgagattc cattaacatc actaaacata tgatgttctt cttcaagacc      5220
     catggtattc ccaaaacaat agtttgcgat caaggccccg aatttgcagg aattattttc      5280
     aaagaattgt gtaatcaata caatataact ttacatgtaa catcttttca acaatcaagt      5340
     agtaatgccc cagttgaaag attacattca tcgttgacgg aaatttatag gataattttc      5400
     gaaaagaaaa aggcattaaa actcaaccta gaccatgatt gtatcctaac agaaacattt      5460
     ataacgtaca acaacgccat acactcgtct acaaaattga ctccatatga agtttttaca      5520
     ggacgaaccc atattttcga acaaaattat aaggcagtca gtcaacaaga ctacatgagg      5580
     gaactggaaa gttataagaa caacttatat gtagaagtaa aggaagaatt tgaaagwcaa      5640
     aaactcaaca aaattctaaa actaaatgag gacagagtat taccaatagc ggtacaggaa      5700
     ggagatactg tttttagaaa ggaaaatagg agaaataagc taacacccag atttacccaa      5760
     cacaaagtag ctgatgataa cggggtaacc tttacaacga acaaaagaca gaaaatacat      5820
     aaatcaaaaa ttaaaaaaag aatcagacaa aatagtagat aaatatataa taatatcatt      5880
     tcaggttata catgacagca gctcaactgc tccatgttca acatgttaag gaaaataccc      5940
     ccctagcaga gatcaaactg ggagaagcaa ggaccattaa aacatatagt tcagtggccc      6000
     atgtaataga actaacggag ttaaaaaata atttgaataa attagaatca agtctacaaa      6060
     atttacaaga tgaagactct aatgattcaa taacacccat acaaagaaag atagaccaag      6120
     caagagaaaa gatctattcc ttgaccccaa accgaagaga aaagagaggc ttaatagacg      6180
     gtctaggtaa tgttataaag aaagtaactg ggaacatgga cgcagaggac gcagctaaaa      6240
     tcgagacaaa atttaagcaa gtatttgaaa atgaagaaaa cattaacaag aacctcgggc      6300
     aacaaatttc ttataacaac gacataatcg taaattttaa taatatgtct gatcattttt      6360
     ataaagaaca ggagaaaatt gagaggtaca ttaataactt taaaaatggc atttctaagg      6420
     aattaatagt agaagataag aaaattagaa ttttacaaat attgaatata ataaataata      6480
     atatagatat tctccaaaac cacatacatg atatagctga aagtatacta ttggctaaat      6540
     tcaaaataat tcccaatttt attttaccta tacaagaatt gaaagatatt gcacagattt      6600
     ttaaacttca aaatttttct attaattcag aagagcatat ttacagacta ctcaacatag      6660
     agatagaatc caaaaaaaca aaaataatat ttcatataaa gattccaata tttgataagt      6720
     acacttacac actttctcac ctaattaaat tacctatcaa tggcacgaat tttctcactc      6780
     tacccaaata tatattgtac gatgataaat ttaattatat gttaagtttt caagaaaaat      6840
     gttcaagaat acatggcact tacatctgcg accccggaac tgcggaaagt aacatggaca      6900
     acagggagtg cgtgaaacaa gtgctgcaag gaatgaaccc tgtttgcgag gcaaagatta      6960
     tcaacacgga cgaggcggta gtagaaccgg aacaacagtg gattgtcatt atcagcaaga      7020
     atcaactaag ggctgaacca agttgtgctg aaccgttcac tattgaggga acgacgatta      7080
     tcaatcacat aaactgttcc atatttatag acggtaccaa atacgatgac agcgaattgt      7140
     tctaccaaga aaggattaaa ttatcactac cagtaacgaa gaacatatct ataaatgcaa      7200
     catcggagga tttaagccta agcaaaatag tactgcatct tcaagagaat aaagctaaaa      7260
     tattccaagt caaggaatct acgattaacc ttcgattcat aacctacgca tcaagtatca      7320
     tcctggtcat atttatactg tatgctttag cagtaaggag aaacactact tacctgccca      7380
     accctgttac ctcagtcaac tacgttccgt ctattccttc gttatggccg tcactttatt      7440
     caaggggggg agg                                                         7453
//
ID   GYPSY5_LTR  repbase;    DNA;    INV; 430 BP.
XX
AC   AE003485;
XX
DT   27-SEP-2000 (Rel. 5.08, Created)
DT   27-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   GYPSY5_LTR is a long terminal repeat from GYPSY5 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY5_I; GYPSY5_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-430
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY5_LTR.";
RL   Direct Submission to Repbase Update (SEP-2000).
XX
DR   GenBank; AE003485; Positions  109444  109015.
XX
CC   GYPSY5_LTR is a long terminal repeat from GYPSY5 endogenous
CC   retrovirus.
CC   GYPSY5's internal portion is listed in Repbase Update as
CC   GYPSY5_I.
XX
SQ   Sequence 430 BP; 140 A; 124 C; 79 G; 87 T; 0 other;
     agttaccaca tctacatcta cttccccacc ccctaaacct ccacgccaga accattagtt        60
     cgttggccca catctgacca catcagcagt ccacgccact acttccccac ccccctaaac       120
     ctccacgctg agccgctagt tcgttgtccc ctcatgttgc aacagtgtag gcggaaacag       180
     cgcagcaaaa cggaggcatt ccccaaatcc gctgggtcag cagattcgcg acaacacaga       240
     gccatacata atacttgatt ctcctttgta ataagtcagt cttaagctac actcgagggg       300
     agtgagatca aaataaaatc acaaccttaa agggaaatac cttttaatta aaatcgggaa       360
     gaaacaatag agggaaaaga aacacaaagg accacagaag gaagacactg gaaggcttca       420
     ctcgttaatt                                                              430
//
ID   GYPSY6-I_AG repbase;    DNA;    INV; 4618 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 2)
XX
DE   GYPSY6-I_AG is an internal portion of the GYPSY6_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY6-I_AG; GYPSY6-LTR_AG; GYPSY6_AG; Gyspy clade; gag;
KW   integrase; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4618
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY6_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 81-81 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY6_AG is a family of autonomous Gypsy-like LTR
CC   retrotransposons.
CC   GYPSY6-I_AG, an internal portion of GYPSY6_AG, is flanked by
CC   GYPSY6-LTR_AG LTRs. The GYPSY6-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 3 copies; they are
CC   less than 1% divergent from the consensus sequence. Two elements
CC   are
CC   nearly 100% identical to the consensus and contain intact ORF,
CC   thus
CC   the family appear to be active.
CC   The consensus sequence encodes the 1511-aa GYPSY6_AGp protein
CC   (pos. 28-4560), composed of gag (zinc-finger, 317-353), reverse
CC   transcriptase (pos.690-859) and integrase (pos. 1207-1350)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..4560
FT                 /product="GYPSY6_AGp"
FT                 /translation="MSKEDGKVLRELESVSCPNSEPATIGKIRALYNDVLS
FT                 ITNTIESECIDQGDVDPKPTYSVTKEEASSAKPMHLSNHVEDEIAILKQRL
FT                 EILELRSKIAVLENEKQASKINQPLLPEALKQIIPQFEDGVGVNHWLKVID
FT                 HSSEMYGWDDNTTMLYASSRLVGAAKEWYNGCRSEICTLSEFTAGLKRAFP
FT                 DNRNEAAIHKELMSVAKRRDETYTAFIYRVNAIGKSGNVSDEAILTYIING
FT                 LARDRIYDNLVVRDYKDIYELMAHIQRCETLLKMRDTPSTSSYQRLENTRV
FT                 NENQREKPNRAAQINRKDALASVRCYNCSSFGHYSGQCLKPRRTIGACFSC
FT                 GQHDHQKLECANAAGKNNIPVFATNETTSERDSYADIEKIKAYQQVSVSLE
FT                 TLNGVKKFHSYVYSLFDSGSPTSFISETFVPDGAAKKASPSGYKGLGNKPL
FT                 SSLGHIVCNIGFRHKIISHRFIILSKSDMDWPIIIGRDALDKLNVHLYHSF
FT                 YLYSKEKLLSLNNKTMNYLKPHMMERLISLGVLKNDSDDRLKRKMPLIKAI
FT                 EENKYNLKEIPFHSLNHAILESSLSNRKKDDNSNQSFISDEFKYGETFAEM
FT                 CAIDVNLPEHDFNIGSIVGIRERKQISSIIIDNYIKRQTGKIYKENHKMTI
FT                 SLTHDTPIFCKPRKLSFAERNHVREIVKDLLQRKIIRQSNSAYASPIVLVK
FT                 KKNGETRMCIDYRPINKITVRDNYPLPLIDTCIEHLGDKQYFTLLDLKNGF
FT                 HQIDMAPASIKYTAFVTPDGQYEYVKMPFGLKNAPSEFQRCINSVLREFID
FT                 NREIVVYLDDIIIASKDLHNHLRILSAVLQTIRKNGLELKLEKCMFVHDEL
FT                 DYLGYHASSKGIRPSNYHIKAIENYPQPSNSKEVQRCLGLFSYFRRFVPSF
FT                 STIAKPLSSLLKQNAPYNFDGPCISAFNTLKEMLIKAPVLAIYDPQKETEL
FT                 HCDASSVGFGSVLLQKQFDGKFHPIAFFSKTASPAEAKLHSYELETLSVIY
FT                 ALKRFHTYVHGVPIRIVTDCNSLVETLKNKNCSAKIARWSLFLENYDYTMQ
FT                 YRPGCSMGHVDALSRQQIAVATQDLDIDSQLRIAQSRDQEIERLKSVIERG
FT                 MVNGYTLHDNLVFRKLENGRLQFRVPRDMINNVIRSTHESIGHLGVDKCCT
FT                 QISKNYWFPLMKTRVENFIKNCLKCIIYSAPARKNNRNLHSIPKIPLPFDT
FT                 IHIDHLGPLPSLQSKKKYILVVIDAFTKFTKLYPTTNTSSREVCNALNQYF
FT                 SYFSRPRRLISDRASSFTSTEFKQFILKHNITHVLTAVCSPQANGQVERVN
FT                 RVIVPILSKLSDPIDHADWSSKLIAAEYALNNTVHSSTRISPSVLLYGIEQ
FT                 KGPNINELTEYLKDNIPTTPRDLESIRVQASENIVNSQFTNETQFMKTHRP
FT                 AIEFEVGEYVVIRNVDNSVNTNKKLIAKFRGPYVIHKRLPNDRYVVRDIEG
FT                 FQQTQIPYDGVLESDKLRRWIASETDLASESLEVSPSDSLAGPDLG"
XX
SQ   Sequence 4618 BP; 1568 A; 860 C; 899 G; 1291 T; 0 other;
     tctcagaagt gggattagtg accaaaaatg tccaaagaag acggaaaagt gttgcgtgag        60
     ttggaatcag tcagttgtcc taactcggaa cccgcaacaa ttggcaaaat tcgtgcgctg       120
     tacaacgatg tgctatcaat tactaacact atcgaaagcg aatgcattga tcagggagac       180
     gttgacccta agccaacgta tagtgtaaca aaggaagaag catcgtcagc aaaacccatg       240
     catttatcta accatgtgga agatgaaatt gctattctca agcaaaggct tgaaattttg       300
     gaactacgaa gtaaaatagc ggtgcttgaa aatgaaaaac aagccagtaa gattaatcag       360
     cctttgctac cagaagcgtt gaaacaaatc atcccgcagt tcgaagacgg cgttggtgtt       420
     aaccattggt taaaagtgat cgatcacagc tccgagatgt atgggtggga cgacaataca       480
     actatgcttt atgcaagtag ccgattagtc ggtgcagcca aagaatggta caatggttgt       540
     cgtagcgaaa tatgtacctt gtccgaattt acagcgggat tgaagagagc ttttcctgac       600
     aatcgaaatg aagcggctat acataaagaa cttatgagtg tcgctaaaag gagagacgag       660
     acgtacaccg catttattta tcgagtgaat gctattggta aatcgggcaa tgtaagcgat       720
     gaagctattt taacgtacat cataaatggc ttggcacgtg ataggattta cgataatctc       780
     gtagtgcgtg actataaaga tatatatgaa ctgatggcgc acattcaacg atgcgaaact       840
     cttcttaaaa tgcgtgatac accaagtacc tcgtcctacc aacgtttaga aaacacacgg       900
     gttaatgaaa atcaacgtga gaaaccgaac agagcagcgc agatcaacag aaaggacgca       960
     cttgctagtg tgcgttgcta caactgctct agttttgggc attattccgg ccagtgcctg      1020
     aagcctcgac gaacgattgg tgcatgtttc tcgtgtggac agcacgatca tcaaaagctt      1080
     gaatgcgcca atgcagccgg gaagaacaat atacctgttt ttgcaactaa tgaaactaca      1140
     agcgagaggg atagctatgc cgatatagag aaaattaaag cgtaccaaca agtaagtgtt      1200
     agtttagaaa cgttaaatgg ggttaagaag ttccattcat atgtttattc attgttcgat      1260
     tctggcagcc cgacgagttt tatcagtgaa actttcgtcc cagatggagc cgcgaaaaag      1320
     gcttctcctt ccggatacaa gggactaggg aataaaccac tttcgtcgct tggacacatt      1380
     gtctgcaata ttggatttcg tcataaaatc atatctcatc ggtttataat cctttccaaa      1440
     tcagacatgg attggccaat cataatcggt agagatgctt tggataagtt aaacgttcat      1500
     ttgtatcact cattttattt gtatagtaaa gagaaattat tgagcttgaa taataaaaca      1560
     atgaattact tgaagccaca tatgatggaa cgccttatct cattgggggt tttgaaaaat      1620
     gattcggatg acaggttgaa gcgtaaaatg ccacttatta aagctataga agaaaacaaa      1680
     tacaatctaa aagagatacc attccatagc ctaaaccacg cgattctaga aagttctctt      1740
     tctaatcgga aaaaagatga taatagtaat caatccttca tttctgatga attcaaatat      1800
     ggtgaaactt ttgctgaaat gtgtgctata gatgtcaatt tgccggaaca tgattttaat      1860
     attgggtcta tagttggaat tcgggaaaga aagcaaatta gctctattat tatcgataac      1920
     tatatcaaac gtcagacagg taaaatatac aaagaaaatc ataaaatgac gataagctta      1980
     acacacgata cacctatttt ctgtaagcca cggaaacttt cttttgcgga acgaaatcat      2040
     gtgcgtgaaa ttgttaaaga tcttcttcaa agaaaaataa tccgacaaag taactcagca      2100
     tatgcttctc caattgtttt agttaaaaag aaaaatggtg aaacaaggat gtgtatcgat      2160
     tacagaccaa ttaacaaaat aaccgtacga gataactatc cattaccttt gatagacaca      2220
     tgtattgaac acttgggaga taaacaatat tttactttac tggaccttaa aaatggattc      2280
     catcaaatag atatggcccc agcatcgata aagtatacag catttgtcac cccagatgga      2340
     caatacgagt acgttaaaat gccgtttggt ttaaaaaatg ctccctcaga gtttcaaaga      2400
     tgtatcaatt ccgtattacg ggaatttata gataaccgtg agattgtcgt ttacctcgat      2460
     gatattatta tagcatcaaa ggacttacac aatcatcttc gaatattaag tgcagtttta      2520
     caaacaattc gtaaaaatgg ccttgagtta aagttagaaa agtgtatgtt tgttcatgat      2580
     gaactagact accttggcta ccatgcaagt agtaaaggaa tacgacctag caattatcat      2640
     attaaagcaa ttgaaaacta tcctcagcct tcaaatagca aggaagtaca gagatgtctc      2700
     ggactattct catattttcg aagatttgtg ccatctttct cgactattgc aaaaccttta      2760
     agtagtttat taaaacaaaa tgcaccgtat aactttgatg gtccctgcat tagtgcattc      2820
     aatacactga aagaaatgtt gataaaagca cctgtgttag ctatttacga tccgcaaaaa      2880
     gaaacagagc tgcattgcga tgctagttca gtaggatttg ggtcagtact tctacagaaa      2940
     caatttgatg gaaaatttca tcccattgca tttttctcaa aaaccgcatc gcccgcggaa      3000
     gcgaaattgc acagctatga attggaaacg ctttcagtta tttatgctct gaaacgattt      3060
     cacacgtatg tacatggcgt accaatacga atagtaaccg attgcaactc tttagttgaa      3120
     acattaaaaa acaaaaattg ttcagcaaaa atagcacgat ggtcactttt tttagaaaat      3180
     tacgactata ccatgcaata ccgtcccggg tgttcgatgg gtcatgtaga tgctttaagc      3240
     cgccaacaaa tagcagtagc tacacaagat cttgatattg actctcagct gcgaattgca      3300
     caatctcgag atcaagaaat tgaaagactc aaaagtgtca tcgaaagagg gatggttaat      3360
     ggttacacct tgcatgacaa cttagtattt cgtaagcttg aaaatggaag attgcagttt      3420
     cgcgttccca gagacatgat taataatgta ataagaagta ctcatgaaag tataggtcat      3480
     cttggggtgg ataaatgctg tactcagata agtaaaaact attggtttcc attgatgaaa      3540
     actcgagtgg aaaatttcat aaaaaattgt ctaaaatgta taatttactc tgcaccagcc      3600
     cgaaaaaata atcgaaatct acatagtata cctaaaattc cactaccatt tgatacgatc      3660
     cacatcgatc acctaggacc tctaccatct ttgcagtcaa aaaagaaata catccttgtt      3720
     gtcattgatg catttacaaa atttacaaaa ttatatccta caactaacac tagcagtcgt      3780
     gaggtttgta atgctcttaa ccagtacttt tcatatttca gtcgccctag gcggctaata      3840
     agcgatcgtg cctcttcttt tacatcgacc gaattcaaac aatttattct taaacataat      3900
     atcacgcatg ttctaacagc cgtttgctcc cctcaagcga atggtcaagt agagcgagta      3960
     aaccgtgtaa ttgttcccat tttgagtaag ctttctgatc caattgacca cgcagattgg      4020
     agttcgaaat tgattgcagc tgagtatgct ttaaataata cggtacattc atctacacgc      4080
     atttctcctt ctgttttact gtatggaatt gaacaaaaag ggccgaacat aaatgaatta      4140
     acagaatacc tcaaagacaa tattccaacc actccccgag atttagaaag catccgtgtt      4200
     caagcatctg aaaatattgt caattcgcaa ttcactaatg aaacacaatt tatgaaaacc      4260
     caccggccag ctatagaatt tgaagtcgga gaatatgtcg ttatacgcaa tgttgacaat      4320
     agcgttaaca cgaataagaa attaatcgct aagtttcggg ggccttatgt tatccataaa      4380
     cgcctcccta acgatcgtta tgtggttcga gacatagaag gatttcaaca aactcagata      4440
     ccttacgacg gagttttaga atctgataag cttaggagat ggattgcatc tgaaaccgat      4500
     ctggcgtccg aatcattaga agtaagtccc tcagatagtt tggcaggacc agatttaggt      4560
     tagttaggtt aattataatg taaattgagg tcaattcata cgtcaggata ggccgagc        4618
//
ID   Gypsy6-I_AP repbase;    DNA;    INV; 4577 BP.
XX
AC   Contig9985;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6AP;
KW   Gypsy6-I_AP; Gypsy6-LTR_AP.
XX
NM   Gypsy6-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4577
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 447-447 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [2007-2513] - Reverse transcriptase
CC   Positions [3573-4049] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           837..4328
FT                 /product="Gypsy6-I_AP_1p"
FT                 /translation="MCRELQLNFCETKQQIIEGLYSRELCLYLMSRSHSHE
FT                 NELLNDIVIFTKINDSRSTRFKNLSHPTHPEATTKNSNCQPEVATNPSTTN
FT                 TNSKLSFQKKKTRCFNCGSFDHISTGCTQPKRRPGSCFTCGSIEHQITACP
FT                 QGKSKPQAVKTQNCSSSATMMLHPSDMVTPAYFINVDLKISDKYVSNVLAM
FT                 IDTGSPVSLLKEKLYPLECTPLMPPSNSGIVGINGSELIVLKQSFVDIYPP
FT                 DTNEPINIKLNIVPDNTINYDCLLGRNFLSHPRVLFTINDGKFEIEFKRND
FT                 IIPFSEIYNLEPTNEQSNIKEPELDIETTLSYNTQNKIKDIIITKYISPAT
FT                 TNHELNTVNVPFSEIKIELKDLSVFYFNPRRLSYFEKNKLQDIIDNLLEKK
FT                 IIRPSCSEFSSPIVLVKKKNGELRLCIDYRELNKRTVRDRYPLPLIDDHLD
FT                 LLRDKNYFTCIDLKDGFHHIVVEENSRKFTSFTTPLGQYEYCRMPFGLCNG
FT                 PSKFQRYVNNIFSEQIKAKKIVVYFDDIVIATETVEAHLDILSDVLSLMKL
FT                 YNLQIRFDKSQFLKKEIIYLGYLVNSSGIRPNPRNVSVILKYPIPCNQKAL
FT                 HSFIGLVSYFRRFIPNFSTIAKPLYDLLKKDTVFVFGEDKLAVFETIKQKL
FT                 SEQPILCLYNPNAETELHCDASSLGFGSILLQKQADNKFHPVFYFSQRTTS
FT                 VQSRYHSYELEMSAIINSIKRFHVYLQGIKFKIVTDCNSVTLTLKKKEINP
FT                 RIARWALFLQNYDYEIQHRSSNRMQHVDALSRNHHILVLEGCTFNQMLAIN
FT                 QCTDPAIKEIYKLLQNSENQFYELRNGLVYRKSDGRLLFYVPVNMRDQVIR
FT                 SCHDDMGHVGMNRTIELIKRVYWFPKMTDCVKSHIENCLKCIVFSPKVGKA
FT                 EGFLKLIEKGTKPFHTIHIDHYGPLNKTVGCFRYIFVIVDAFSKFLTLYPV
FT                 RTVNTKEACSKLIEYFSYYSKPIRIVSDRGSCFTSHAFKDFCAIHDIQHVL
FT                 IAAGSPQANGQVERYNHTLKVMLSKLLHEEDQNWNKHLNKVQFAINNTFNR
FT                 AIKNSPSNLLFGMNQHGDTHDYLRLILESDNLQNCERDLGKIRDVAQDNNL
FT                 DSQLKNKAYYDSGHRPAHQYSIGDLVMIKNVDTTPGSSKKHIPKFKGPYRV
FT                 KKSIR"
XX
SQ   Sequence 4577 BP; 1586 A; 790 C; 752 G; 1449 T; 0 other;
     aaattcagaa gttggattcg aaggagatat cttattgtta cggattctca caattgaagt        60
     ttgaacagtg aatagtaagt tgacgaattg ttatgtcaat ctattcatta ttgctaatta       120
     atgatggacc aacacgtgga ttcagaaggt aagattgacc ataacctaca aaattgtttc       180
     gaccataatt acactagaag taatgatgct aacaacattg ctatcagtgg tgcagccaat       240
     agtccgaatt tttcttcgac gtcgtccagt gttgctgcac ctgatgtacc caacaacact       300
     cgtaatccgt tatcaaacga tgtcaatgtt aacaacaaca gcttaccccc acaatcgaat       360
     aatatgatat cagatacaaa ttctgttgtg atggcactaa ttgaacaaaa tcgattactt       420
     atggaacaac tgatgtcaca tcgttccaca acaccaagtt catctattca aagtaacata       480
     tcgaacggct attatgtgat gcctaatttc catgaatcat tgccgaactt catcggaact       540
     gagtcataca ttgaagcatc aaattggatc aagagcataa aatcgaccgc tgatcttcat       600
     aactggcctg attcattcaa attggagatc atacggacta aacttaaggg tgctgctcat       660
     aactggtacc ttggacgaac attctctgac tgggagcaat ttgaaagaca gtttaaagag       720
     actttcattg gtacacaaac ttcaacagta gaacgtacaa aattgttaat tgctcgtcac       780
     cagcggaaag gtgaaatgat aatagaatat ttccatgaca atattttacg gcacgtatgt       840
     gtcgtgaact tcaacttaat ttttgtgaaa ctaagcaaca aattattgaa gggttgtatt       900
     cacgtgaatt atgtttatat ttaatgagcc gaagtcattc tcatgaaaat gagcttttaa       960
     atgatattgt tatttttaca aaaatcaacg attctcgaag cacgcgattc aagaatttaa      1020
     gtcatccaac acatccagaa gcaacaacca aaaatagtaa ttgtcaacct gaagtagcaa      1080
     caaacccatc taccactaat acaaactcca agctgtcgtt tcaaaagaag aaaacgcgat      1140
     gtttcaactg cggttcattt gaccacatct caactggatg tactcaacct aaacgacgac      1200
     ccggttcttg ttttacatgt gggtccattg aacatcagat cactgcctgt ccacaaggca      1260
     aatcaaaacc tcaagcagtc aagacccaaa attgttccag tagtgctaca atgatgctgc      1320
     atccatcgga tatggtaaca cctgcatatt ttattaatgt tgatttaaaa atttctgata      1380
     agtatgtctc aaatgtttta gctatgatag acactggtag tccagtgagt ttacttaaag      1440
     aaaaattgta tcctttagaa tgtactcccc ttatgccccc atctaattcg ggtattgtag      1500
     gaattaatgg atctgaactt attgtactta aacagtcctt tgtcgatata tatcctcctg      1560
     atactaatga accaattaat ataaaattaa atattgtacc tgataacact ataaattatg      1620
     attgtttgtt aggtagaaat tttctgtcac atccgagggt tttgtttaca attaatgatg      1680
     ggaaatttga gattgaattt aaacgtaatg acatcatacc ttttagtgag atatataatt      1740
     tggaacctac taatgaacaa tctaacatta aggaacctga actagatatt gaaacaacac      1800
     tgtcatataa tacccaaaac aaaattaaag atattattat tacaaaatat ataagcccag      1860
     ctactacaaa tcatgaattg aatactgtta atgtaccttt ttctgaaatc aaaatagaac      1920
     ttaaggatct tagtgttttt tattttaacc ctagacgttt atcttacttt gaaaaaaata      1980
     aactacagga tattattgat aatctattgg aaaagaaaat cattaggccc agttgttctg      2040
     aattcagtag tccaatagtg ttagtaaaaa aaaaaaatgg tgaactacgt ttgtgtattg      2100
     attataggga actgaacaag agaaccgtaa gggataggta tccccttcca ctcattgacg      2160
     atcacttaga cttattgcgt gataaaaatt attttacttg tattgatctg aaagatgggt      2220
     tccatcatat agttgtagaa gaaaattcta ggaagtttac ctcatttacc acacctttag      2280
     ggcaatatga atattgtaga atgccttttg ggttatgtaa tggtcccagt aaattccaac      2340
     gttatgtgaa taatatattt tctgaacaaa ttaaagctaa aaaaattgtt gtttattttg      2400
     atgacatagt gattgcaacc gaaacagtag aagcgcattt agatatatta tctgatgttc      2460
     tatccctaat gaaactatat aatttacaaa taagatttga caaaagtcag tttttgaaaa      2520
     aagaaataat ctaccttggt tatcttgtca attcttctgg cattcgtccc aatcccagaa      2580
     atgtatctgt tattttaaag tatccgattc catgcaacca aaaagcgctc catagcttta      2640
     ttgggttagt gtcgtatttc cgtaggttta tccctaattt ttctactata gcaaaaccat      2700
     tatatgatct tctaaagaaa gatacagtat tcgtctttgg tgaagacaag ttagcggttt      2760
     ttgaaaccat taaacaaaag cttagcgaac aaccaatttt atgcttatac aacccaaatg      2820
     cagaaactga gcttcattgt gatgcctcga gtttaggatt cggatcaata cttctccaaa      2880
     aacaagccga taataagttt cacccggttt tctattttag ccaacgcact actagtgtac      2940
     agtctcgtta tcacagctat gagttagaaa tgtcggcaat aataaactca ataaaaagat      3000
     tccatgttta cttacaaggc attaaattca aaattgtaac tgattgcaac agcgtaacat      3060
     tgacattaaa gaaaaaagaa ataaatccta ggattgctcg ttgggcactg ttcctacaaa      3120
     actatgatta tgaaatacaa cataggtcat ctaaccgaat gcaacacgtt gatgcgttaa      3180
     gtaggaatca ccacatacta gttcttgaag ggtgcacatt taatcagatg ctggcaataa      3240
     atcaatgcac tgacccagct attaaggaaa tttataagtt gttacaaaat tctgaaaatc      3300
     aattttatga acttcgaaat ggattagtct atcggaaatc cgatggaaga ttgttattct      3360
     atgtaccagt taatatgcgt gaccaggtca tcagaagctg tcatgatgac atgggccatg      3420
     taggtatgaa tagaacgata gaattaatta aacgggtata ttggttcccc aaaatgactg      3480
     attgtgtaaa aagtcacatt gaaaactgtt tgaaatgtat agtgttttct ccaaaagtag      3540
     gcaaagcaga aggtttcctt aaactaattg agaaaggcac taaacctttc cacacaattc      3600
     acattgatca ctatggaccc ttaaataaaa cagttggatg ttttagatat atatttgtaa      3660
     ttgtagatgc atttagtaag tttttaactt tatatccagt ccgtacagtt aataccaaag      3720
     aagcctgttc aaaattaatt gaatattttt catattacag taaacctatc cgtatagtat      3780
     ctgatcgcgg atcttgcttc acctctcatg cgtttaaaga tttctgtgct attcatgaca      3840
     ttcaacatgt ccttatagct gctggttccc ctcaggctaa tggccaggtt gaacgttata      3900
     atcatacact taaggttatg ttgtcaaaat tactccatga agaagatcaa aattggaaca      3960
     aacatttaaa taaggttcaa tttgccatta acaatacttt taaccgtgca ataaaaaatt      4020
     cacctagtaa tcttttattt ggtatgaacc aacatggtga cacccatgat tatctaagac      4080
     ttatattaga gtcagataat ctacagaatt gtgaaagaga cttaggaaaa attagagatg      4140
     ttgcacaaga caacaaccta gactcacagc tcaaaaataa ggcatattat gattcaggtc      4200
     atcgtcctgc ccatcaatat tccattggtg acctggtgat gataaaaaat gttgacacaa      4260
     ccccaggttc tagtaaaaaa cacattccta aatttaaagg gccttacaga gttaaaaaaa      4320
     gcattaggta acgataggta tgtcctcaat gatgtcgaag ggtttcaagt cactcagact      4380
     ccctttgatt cagtatatga gagtaaacac atgaaactct ggattaaaat tcaaagttag      4440
     tattttctat acccacagtt ctattatgtt ttgattatct caaattctta tttaatattg      4500
     ttttgttaat tgatataatt tgtttattta atattgttat tgtttaaatt agttgcttgt      4560
     taattgtata ttgataa                                                     4577
//
ID   Gypsy6-I_Dmoj repbase;    DNA;    INV; 8376 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   02-NOV-2020 (Rel. 25.11, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dmoj;
KW   Gypsy6-LTR_Dmoj; Gypsy6-I_Dmoj.
XX
NM   Gypsy6-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8376
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1056-1056 (2009).
XX
RN   [3]
RP   1-8376
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (02-NOV-2020).
XX
DR   [3] (Consensus)
XX
CC   Positions [5937-6413] - Integrase core
CC   'ATGT' target site duplication
CC   LTRs are 99% similar to each other.
CC   [3]: sequence updated with consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2159..3526
FT                 /product="Gypsy6-I_Dmoj_1p"
FT                 /translation="MEDAEYHNPGLSVGWIYQRCKEELITIAREFGLDAEG
FT                 RVEDLRKRLSTFIQSNNYSAEAKARLAEIEKRFAKGSEFTLGGNAPSMGSR
FT                 AYQKSEPDLRKVQEQGPVQTESLRLRVPMANSAAVRRREERKEFGNTGEDE
FT                 AVATIPKTGRQVPASTIPLERSPPWGVAEQVRKWGMRYDGRTDPLGFVEIV
FT                 EERAITYGIELDQMPRAMSEVFADKAAKWFLTSGLRDSSWADFRREFLDFF
FT                 LPPQYFERLEDQIRSRHQREGESFKDYLIELRLLMRQARYSAAQELYRAYE
FT                 NAAPDYRLYVRRHDFVTLTQLTQMAAEFENVQGQRREQGREAVADRTKTAW
FT                 SKPAENRPNNPFRTQAPGSQVRGQAAGAAMAPTAVSQEAVHRMMVQEGESG
FT                 TATRRTCYRCGQVGHFARECQSGQAPSCQRCGKKGKSTRECCERDDAGNGM
FT                 GRPPLERGGAA"
FT   CDS           3460..7089
FT                 /product="Gypsy6-I_Dmoj_2p"
FT                 /translation="MLRARRRGKRNGAPPAGAGRRRLDSKDEVKNPLSVEE
FT                 GRIVAAVVIGGRAMTATIDTGATRSCISEDCVRRQAIRGEIQEMQSRIRLA
FT                 DGSTLEITKRISVEVSLAGKVAKMTLLVMPAMLDHLILGMDFLCAMDTTLC
FT                 CGNAALTMRMKEEPNEETSLRSGPHESKESDQSGGPQSLARSRIREKERKR
FT                 GPEAPCWSPTQKGGAASTGGGLPIDGQGTSQGGGPPARPIKRWREIPKREP
FT                 GRCPQLARAKDLEEGLEERPPEVRLVGLEAEDVDEIRSSQSPQRPIYQEED
FT                 EENTEPSPDDAGWPEDLEDELKEFLEAELALFEGLDGVSNIAEHSIRMRDD
FT                 KPLKQRYYPKNPAMRKVIDEQVDELIRAGAIEPSRSPHSAPIVLVKKKTGD
FT                 WRMCVDYRQLNAHSIPDAYPVPRINHILERLRHARYISTLDLKSGYWQIPM
FT                 AADSRECTAFTVPGRGLFQWRVMPFGLHSAGATFQRALDTVIGPDMEPHAF
FT                 AYLDDIVVIGATKAQHVENLREVFRRLRKANLRVNRKKCSFFRKRLVYLGH
FT                 VISEEGIRTDPAKVEAIRRFPTPSTLKELRQCLGMASWYRRFVPNFASMVE
FT                 PMTRLLKKGHKWEWSDEQEESLKQLKESLTTAPVLACPDFSARFVLQTDAS
FT                 DYGLGAVLTQEVEGEEKVIAYASRKMLKAELNYSATEKECLAIVWAIRKMR
FT                 CYLEGYRFEVVTDHLALKWLNSIESPTGRIARWALELQQYQFDIRYRRGKL
FT                 NVVADALSRQPVESCQRMMETNPPCKWIARMRGRIKEDPEKFKDYVEENGQ
FT                 LYRNLGHRVDDEDYIPWKLCVPTHQRKRVLQECHDAPTAGHQGVRKTVMRL
FT                 AQRYYWPGMFREAALYVKRCEECQKFKSEQRKPAGQMLTRQVAEPMSILCA
FT                 DFVGPMPRSKRGNTMLLVFHDAFAKWVELVPLKRATAALLQAAFRERILAR
FT                 FGVPKMFVCDNGAQFASKGFRSYMESLGVRLQFTAPYSPQENPTERTNRTV
FT                 KTMIAQYIEGHQSSWDVLLPEISLAINSSVADSTGFTPAFLMMGREPRLPS
FT                 TLYDEVTPGSATREVDLETRKETMKEIFEVARNNLQKASKDQGRYYNLRRR
FT                 EWRPALGSMVLLRQHQLSSAAEGFAAKLAPKFEGPYRVVHFISPNVVRLAR
FT                 AGERRKRVANLSQLKPFYTEEEETGETMLREETGEEGRFDRPISTIGTPLE
FT                 "
FT   CDS           7244..8365
FT                 /product="Gypsy6-I_Dmoj_3p"
FT                 /translation="MEDDVITVSSDEEWEEAFPQGSSWERQPRTGPVPSVH
FT                 HSTIDLSVALEDAIMVLKGSLTTIYVPAPGVQRTPPHVEEPASTPTSPTPS
FT                 QVEGHSISTDEELECWASPMPWAADEREEESNAEEVADQLPPREVGGGRER
FT                 CPSAPNPASRVASRAEAGEPEKLWTRRGERREDAEPMPTPRRRLEDDRGDN
FT                 RRRDSARVAFRYVPGAVENRRGLAQPVYRPERTSRQSGAGRRDRDARSPNA
FT                 DGASSSGRADRRRRPASDAEPRPKWRKLDDPRLAGSSHRRELDDVLDGWQA
FT                 DEASQSRAEDGAGREGFVSIPRDWTVRPEGTVLAEEVVELVRREAEVXSRR
FT                 HRRTRFKVTSDAGVYNVTVAATGAVVVSLIK"
XX
SQ   Sequence 8376 BP; 2446 A; 1769 C; 2526 G; 1633 T; 2 other;
     agtggcgccc gagcagggac ccagggaggt gcgcggtgta tcgcatggcc gaggggaaac        60
     ggcggaaatt ataataaata tataaaagtg ctatattgtg atatataaaa ccttaaaaat       120
     cttgatcgag aagagtagaa aatttatgtg tatatatata tatgtgcgtg ggtgtttaac       180
     gattttggcg caagctgtac ttttcggcgc cataatcgtt ttaccgttgg ttttcttctc       240
     tcgtcgcttt tgaatcttta taccctggac agcgcgatcg ctgtgaggca tatccgtttg       300
     gttgcttaca tttcatcacg tatctactca ttgcttatat gtctggtttt ggtggtagtt       360
     gattaaatat attatatgtc ggaattaata tatatggtat attgaagtaa atatatatat       420
     gtggtgcata taagcgtata tgcatgaagg agtgtaatgg tatatgggta tgtatgtgcg       480
     agtaaatacc cgagaatatt gttatatgtg caagtagtgg ttgattttga catgtgaata       540
     tcttctctga gtggcaagtc gagtgtatct tgcgagtgag aaaagaaaaa gtagagtata       600
     ctggtaacgg taaagagacg aattgcgcgt ctaattcgaa tttcggcgcg tcgattttgt       660
     gcatatttat tcgccaatat atgagtatac gcatttgcat atatgtatgt atgtttgtgt       720
     gcatgtctgt agttatatgc aaacatatat atatgcatgc agactagagt gcatatacat       780
     atatacgcat tttgtccgtt tgttactccc gctactcgct atatatatat atatgtaggt       840
     gagagcgcat aggcgagtga aagagaaaga gcgagggtca attttggccg cttgtcagtt       900
     acatatgtat gtatgcaggt tatagcgtac atacatatat acgcgctttg tccgtttttt       960
     ttttactctc gctattcgct gtatgcatac atatatgcat atgtgagcgc ataggcgagt      1020
     gagagaaaga ggtgagggtc aacttttggc cgtttgtccg ttacgtgggt ccgctgtacc      1080
     ctacgtaggg catatgcgac atgtgggtat gaaaacgcgt tgcatcgaga ttcgtccggt      1140
     ttttggtggc ctggggccca ctatgcagct cgtctattat agttcgctta cccgtgcgtt      1200
     atttcgtgat accctaccca gggcatatcc gaataaaata aaataaaata aaataaaata      1260
     aaataaaata aaataaaata aaataaaata aaataaaata aaataaaata aaataaaata      1320
     aaataaaata aaataaaata aaataaaata aaataaaata aaataaaata aaataaaata      1380
     aaataaaata aaataaaata aaataaaata aaataaaata aaataaaata aaataaaatw      1440
     aaacaaggcg gagcgaatcg gaataaagca gggtgaagcg ggaagtattc aagaagtggg      1500
     gaggtaaggt aaagagaacg aggcagaatg tagcaggtgt aaagtgaaga gagatgaaac      1560
     gagtagaaaa tgaaatgaag aggggcaaga ttcgataatg aagatggagt gaagcaacga      1620
     agaaattaaa caaaggtatc gaaagaaaac gatcaaggaa aatgaaagtg tgggaatgaa      1680
     gatgaaatac agcaagttaa acgaaaggaa aaggaattaa aggcgtataa aaaggaagcg      1740
     aaaaggaaac gaatgaacga ggaagatcta actgaaagta aatacgggga tgagaagagg      1800
     agatgaagta aaggcactaa aaaaaaaaaa aaaaaaaaaa gaaaagaaat tataataata      1860
     aagagaatga taataataat aaagtaaata ataataaagt aaaaaaaaaa aaaaaaaaaa      1920
     aaaaaaaaaa aaaaggaaag aaagaaaaga aataaaataa gaggaaataa agagaataca      1980
     gtaaaattag aataagtgat caaagggtag gttaagagga aataagataa taataagacg      2040
     ataaacgcaa gcgaaattgt aagaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      2100
     acccaacagt agagtagtaa gagctgaaca aaccgagagg aataaataag cattcgagat      2160
     ggaggacgcc gaatatcata acccaggatt gagcgtcggg tggatctacc agcggtgcaa      2220
     ggaggagctg atcacgatag cgcgagagtt cggcctggat gctgagggcc gagtagagga      2280
     cctaaggaaa aggctctcta cgttcataca gagcaacaac tattcggcgg aggccaaagc      2340
     gagattggcc gagatcgaga agcgtttcgc gaaagggtcc gagttcactc tgggaggcaa      2400
     tgcgccaagc atgggcagcc gggcttatca aaaatcggag ccggatttgc gaaaggttca      2460
     agaacaaggt cccgttcaaa cagagtccct gagactgaga gtgcccatgg cgaacagcgc      2520
     ggcggtgcga cgtcgtgaag agcggaagga gtttggcaac actggagaag acgaggcggt      2580
     agcgacaatt ccgaagactg gccgacaagt ccccgcgtct acgatcccgt tagagaggtc      2640
     cccaccctgg ggggtcgccg aacaggttcg taaatggggc atgcgctatg atggccgaac      2700
     ggacccgttg ggcttcgtgg agatcgtgga agagagggcg atcacctacg gcatcgagtt      2760
     agatcagatg ccacgagcga tgagcgaggt attcgcggat aaggcggcga agtggttctt      2820
     gaccagcggg ttgagagatt cttcgtgggc cgatttcagg agggaattct tggatttctt      2880
     cctccccccg cagtacttcg aacgcctgga ggatcaaata aggtcgcgtc atcagagaga      2940
     aggagaaagt ttcaaggact acctaatcga gcttaggttg ttgatgcggc aggcacgata      3000
     tagcgcggcg caggaactgt atcgagcata tgagaacgcg gccccggact atcggttgta      3060
     cgtgaggcgt catgactttg tcacgctgac acaactcacg cagatggcag ccgagtttga      3120
     gaatgtccaa ggtcagagga gggaacaagg cagagaggct gtggcagata ggacgaagac      3180
     agcatggtcg aagccggcgg aaaatcgacc aaacaaccct ttccgcacac aggcgccggg      3240
     atcccaagtc agaggtcaag cagcaggagc agcgatggcg cccacggcgg tatcccaaga      3300
     ggctgtccac cggatgatgg tgcaggaggg cgagtctgga acggcgacac gacgaacttg      3360
     ctatcgctgc gggcaagtag gtcatttcgc acgcgaatgc caaagcgggc aagcaccatc      3420
     ctgccagcga tgtggaaaga aaggtaaaag cacgcgggaa tgctgcgagc gcgacgacgc      3480
     gggaaacgga atggggcgcc ccccgctgga gcggggcggc gccgcttaga tagcaaagat      3540
     gaggtgaaga atccactttc ggtggaggag gggaggatcg tcgcggcggt ggtgattggg      3600
     ggtcgagcga tgacggccac aatcgacacc ggggccacac gcagttgcat aagcgaagac      3660
     tgtgtgcgca ggcaggcgat ccgaggcgag atccaggaga tgcagtcccg gattagattg      3720
     gctgatggat ccacgctgga gataacgaag aggataagtg tggaggtgag tctcgcagga      3780
     aaggttgcaa agatgacatt gctcgtcatg ccggcgatgc tggaccacct tatcctgggg      3840
     atggacttct tgtgcgctat ggacaccaca ttgtgttgtg gcaacgcagc gcttaccatg      3900
     aggatgaagg aggagccgaa cgaagagacg tccctgagaa gcggaccgca tgaatcgaaa      3960
     gagagcgacc agtctggagg gccacagtcg cttgctcgat cgaggattcg cgaaaaggaa      4020
     cggaagagag gccccgaggc accgtgttgg tccccgacgc agaaaggggg cgcggcgtca      4080
     acgggcggag gattgccgat cgatgggcag ggcacgtcgc agggcggcgg accaccggcc      4140
     cggccgatca agagatggcg cgagatcccg aaaagagaac ccgggaggtg tccccagcta      4200
     gcgagggcaa aggatctgga ggaaggacta gaggagcgtc ccccagaagt taggttggtg      4260
     ggattggagg cggaggatgt cgacgaaatt cggagtagtc agtcaccgca gcgtccaata      4320
     taccaagaag aggatgagga gaatacagag ccttcccccg acgacgcggg gtggccagag      4380
     gacctggagg acgagctgaa ggagttcctg gaagcggagc tggcgctttt cgaggggctc      4440
     gacggagttt caaatatcgc cgagcatagc ataaggatgc gggatgataa gcctcttaag      4500
     caaagatatt atcccaagaa tccggctatg aggaaggtaa ttgacgaaca ggtagacgaa      4560
     ttgattagag ctggagccat cgagccgtcg cggagcccgc atagcgcacc tatcgttctg      4620
     gtaaagaaga agaccggaga ttggcgcatg tgtgtggact acaggcagct gaatgcacac      4680
     tcaatcccag acgcctatcc cgttccacgt atcaatcaca ttctcgagag gctgagacac      4740
     gcacgataca tatccaccct ggatttgaag agtggatatt ggcaaatccc catggcagca      4800
     gatagtagag aatgcacggc gttcacggtc ccggggagag ggttattcca atggcgagtg      4860
     atgccatttg gtttacattc agcaggcgct acgttccaaa gggcgttgga cacagtaata      4920
     ggaccggaca tggagccgca tgcttttgca tacttagacg acattgtggt gatcggcgcc      4980
     acgaaagcgc agcatgtgga gaacttgagg gaagttttcc gccgattgag gaaagccaac      5040
     cttcgagtaa accggaagaa atgcagcttc ttcaggaaaa ggttggtcta tctcgggcat      5100
     gtcatcagcg aagaagggat acgcacagat cccgcaaagg tcgaggcgat ccgccgcttc      5160
     ccgacaccat cgactctcaa agaactgcgg cagtgtttgg gaatggcatc gtggtacagg      5220
     cgattcgtgc caaactttgc gtcgatggtg gaaccaatga cgagactcct taagaaaggc      5280
     cacaaatggg aatggagcga cgagcaagag gagtcattga agcaactcaa agagagcctc      5340
     acgaccgcgc cagtgttggc gtgtcccgat ttttcagcga ggttcgtact acagacggat      5400
     gccagcgact acggcttggg cgcagtgctc acacaagagg tcgaaggcga ggaaaaggtg      5460
     attgcgtacg ctagtcggaa gatgttgaaa gcggagctca attattcagc tacagaaaag      5520
     gagtgcctag caattgtctg ggctatcagg aaaatgcgtt gctacctcga aggctatcga      5580
     tttgaggtag ttacagatca cttggcattg aagtggctta attcaataga gagccccaca      5640
     gggagaatcg cgaggtgggc attggagctg cagcagtacc aattcgacat ccgctatcga      5700
     cgagggaaac taaatgtggt ggccgacgca ctctctcgcc aacctgtgga aagctgccag      5760
     cgaatgatgg agaccaatcc cccttgcaag tggatagcga ggatgcgtgg gaggatcaag      5820
     gaggatccag agaagttcaa agattacgtt gaggagaacg ggcagctgta ccgtaatctt      5880
     ggccaccggg tggacgacga agactacatt ccctggaaat tgtgcgtccc aacccaccag      5940
     cggaaaagag tgctgcaaga atgccatgac gctcccacag cggggcatca aggcgtgagg      6000
     aagacggtta tgaggctggc gcaaaggtac tactggccgg ggatgttccg ggaagcggct      6060
     ctatatgtga agcgatgcga ggagtgccaa aagtttaaga gcgagcagcg caaaccagcg      6120
     ggtcagatgc tgaccaggca agtagcggag cccatgtcga ttctgtgcgc ggatttcgta      6180
     ggtcccatgc ctcgatcgaa gcgcgggaac acaatgttgc ttgtgttcca tgatgcgttc      6240
     gccaaatggg tggagctggt gccgttgaag agggcaaccg cggcgttgct gcaagcggct      6300
     ttcagggagc gcattttggc tcgattcgga gtccccaaga tgttcgtctg tgacaacggc      6360
     gcgcagtttg cgagtaaggg atttcggtca tacatggagt ccttgggggt gcggctacag      6420
     ttcactgccc cgtactcccc gcaagaaaat ccgaccgaga ggaccaatcg caccgtaaaa      6480
     acgatgatag cccagtacat cgagggacat cagagttcgt gggatgtgct gctaccagag      6540
     atatcgttag cgatcaactc tagtgtcgcg gattctactg gattcacgcc tgcgttcctg      6600
     atgatgggta gagagcctcg cctcccgtct accctttacg acgaggtcac tcccgggtcg      6660
     gcaacgaggg aagtcgactt agagacaagg aaagagacga tgaaagaaat cttcgaagtg      6720
     gcccgtaata atttgcaaaa ggcgtcgaag gaccaaggca ggtattacaa cctgcgccga      6780
     cgagagtgga gacccgcgct agggtcgatg gttctgctgc ggcagcacca gctgtccagc      6840
     gcagcggagg gcttcgcggc gaaattggcg cccaagttcg agggccccta cagggtcgtc      6900
     cactttatct cccccaacgt ggtgcgactc gctcgagcgg gcgaacgaag gaagagggtg      6960
     gccaaccttt cccagcttaa gcctttctac actgaggagg aggagaccgg cgagacgatg      7020
     ctgagagagg aaacgggaga ggagggaaga ttcgatcggc ctatatcgac cattggcacg      7080
     ccgctcgaat gaaagagact cgattgcatg aaaccccgct atcccctcta ccacctcttt      7140
     ggaaaaacct cactaatctc acactaacgc attaactgtt ttggtcaaga agagatccga      7200
     gagagagtga atattaatgt tctaattccc acagataagc gaaatggaag acgacgtgat      7260
     cactgtcagt agtgacgagg aatgggagga ggcatttcct caagggtcgt cgtgggagag      7320
     gcagccacgc accggtcctg tcccttccgt ccatcactcc acgattgact tgtcggtggc      7380
     tttggaggac gcaattatgg tgctgaaggg aagtctcacc acgatatacg tgccagcgcc      7440
     tggagtgcag cggactccac cgcacgtgga agagccggcg tctactccca cttcgccgac      7500
     tccgtcccag gtggagggcc acagtatctc aacagacgag gagttagagt gctgggccag      7560
     cccgatgccg tgggctgcgg atgaacgcga ggaggagagc aacgcggaag aggtcgccga      7620
     ccagctcccg ccacgcgagg taggaggcgg cagggagcgc tgtccctccg ccccaaatcc      7680
     tgcctcgagg gtggcgtcgc gagcggaagc cggagagcca gagaagcttt ggacgaggag      7740
     gggcgagcgg cgagaggatg cggagccgat gccgactcca cggcgccgat tagaggacga      7800
     tcgaggcgat aaccgacgcc gcgactccgc gcgggtcgcg tttcgctatg ttccgggggc      7860
     cgtcgagaac aggcgtggat tggcccagcc ggtctatcgt ccggagcgca cgagtcgaca      7920
     gtcgggtgca ggccgccggg atcgagatgc cagatccccg aacgccgatg gagcgtcgag      7980
     cagtggcagg gcagaccgac ggagacgacc agcaagcgac gccgagccgc ggccaaaatg      8040
     gcggaaacta gatgatcccc gtctggcggg gtcgagccac cggagggagc tggatgatgt      8100
     cctcgatgga tggcaagcag acgaggcgtc ccagtcaaga gcagaggatg gtgcgggacg      8160
     agagggcttc gtgtccatcc cgcgggactg gacagtgcgc ccggagggca cggttctagc      8220
     cgaagaagta gtagagctgg tgaggaggga agcggaggtt tkcagtcgcc gacatcgccg      8280
     cacgcgcttc aaagtgacgt cggacgccgg agtctacaat gtcacggtgg cggccacagg      8340
     agccgtggtc gtctccttga ttaagtaagg gggggg                                8376
//
ID   Gypsy6-I_Dpse repbase;    DNA;    INV; 4951 BP.
XX
AC   Unknown_group_213;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dpse;
KW   Gypsy6-LTR_Dpse; Gypsy6-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4951
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1057-1057 (2009).
XX
DR   Genome; Unknown_group_213; Positions   20605   15655.
XX
CC   Positions [1826-2305] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..2533
FT                 /product="Gypsy6-I_Dpse_2p"
FT                 /translation="MPSIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDRE
FT                 KTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVI
FT                 IFSKNETEHIQHINTVLKYLIDANMRVGPEKTQFFKESIEFLGFIVTKDGA
FT                 TSDPKKVKAIQDFPEPKSVYSVRSFLGLANYYRVFIKDFAAIARPISDILK
FT                 GENGSVSRHVSKKIPVEFNEAQRDAFHRLRNILASEDVMLMYPDFQKPFDL
FT                 TTDALASGIGAVLSQGNRPITMISRALKQAEQNYATNERELLAVVWALGRL
FT                 QNFLYGSREINIFTDHQPLTFAVSDKNTNSKIKRWKSYIDQHNAKMFYKPG
FT                 KENLVADALSRQNVNALQDGPRSDAAAVHSEISLTYTVETTDKPLNCFRNQ
FT                 IVLEESRFPLKRNLLLFRSKTRHLISYTDKSSILKTFKEVVNSGVVNAIHC
FT                 DLPTLASFQHDLILHFPATQFRHCKNLVQDITDKNEQLEVITAEHNRAHRA
FT                 AQENIKQVLRDYYFPNMATLAKEVVANCRVCTKAKYDRHPKKQELGETPIP
FT                 SYTGEMLHIDIFSTDKKQFLTCVDKFSKFAVVQPILSRTIIDVTSPLLQII
FT                 NLFPATKTIYCDNEAAFNSETITSMLRNAYGICVVNAAPLHSTSNGQVERF
FT                 HSTLTEIARCLKLDKKISDTTELILKATIEYNKSLHSVTREKPIEVVHAVA
FT                 HVRRENVKDRLIKAQQDNIKRCNAARQNRVFEVGEKVFQKNNKRLGNKLCS
FT                 EQKVEADLGTSVLIKGRVVHKDNLK"
XX
SQ   Sequence 4951 BP; 1562 A; 1172 C; 1036 G; 1181 T; 0 other;
     atgtgccgac tgacttctga cttcataaac aaagaagtca aacaattact ggacgatggc        60
     ataatcaggc ccatccagat cgccttacaa cagaccaaca tgggtggttg ataaaaaagg       120
     cactgactca tacggtaacc caaaaaaaag gttggtaatc gatttcagga aactgaacga       180
     aaaaaccata ccggaccgct atcccatgcc aagcatcccc atgattttag cgaatctagg       240
     gaaggcgaaa tacttcacta ccctcgactt aaagtctggg taccaccaaa tctaccttgc       300
     ggagcatgac cgcgaaaaga cttcgttttc agtaagcagc ggcaagtacg agttctgtcg       360
     gcttccgttt ggcctgcgca atgcaagcag catattccaa agggcaatag acgatatcct       420
     gagggaacat ataggaaaga tttgctttgt ctatgtagac gacgtcataa ttttttctaa       480
     aaacgaaacg gagcatattc aacacatcaa cactgtgtta aaatatctaa tcgacgccaa       540
     catgcgtgta ggccctgaaa agactcaatt cttcaaggaa agtattgaat tcctgggttt       600
     cattgttacc aaagacggag caacatccga tcccaaaaag gttaaagcca ttcaggactt       660
     ccctgaaccc aaaagtgtct acagcgttag gtcattcttg gggttagcta actactatag       720
     ggtctttatt aaggactttg ccgctatagc gcgcccaata tcagacatac ttaaagggga       780
     aaatggttca gtgagtaggc acgtatcaaa gaaaatccct gttgaattta atgaagctca       840
     acgcgatgca tttcaccgtc tgcgaaacat tttggcatca gaagatgtca tgctaatgta       900
     cccagacttc cagaaaccgt tcgatttaac cactgatgct ttggccagtg gaattggcgc       960
     ggttctttcc caaggcaata ggccaataac aatgatttct cgcgccttaa aacaggccga      1020
     acaaaactat gccaccaacg aaagagagtt gctggccgtt gtgtgggctt taggcagatt      1080
     gcagaacttt ctgtacggtt ccagggaaat taacattttc acggaccacc agccgctcac      1140
     gttcgctgtg tcggacaaga acacgaattc taagattaaa agatggaaat cttacatcga      1200
     ccagcacaat gccaaaatgt tttataaacc gggcaaagag aatctggtgg cggatgccct      1260
     ttcaaggcaa aacgttaatg ctttgcaaga tgggccccgt tcggacgctg cagccgttca      1320
     cagcgaaatt tccctgacct acacagtcga gacaacagac aaacctttga attgttttag      1380
     gaaccagatt gttctagagg aatcgcgttt cccgctaaag cgaaacctgt tgctgtttcg      1440
     cagcaaaaca cgccacttga tcagttacac tgacaagagc tcaattctca aaactttcaa      1500
     agaagttgtg aattctggag tcgttaatgc aatacattgc gacctcccca cgttggcaag      1560
     tttccaacac gacctgattt tgcatttccc tgccacccaa ttcaggcact gtaaaaatct      1620
     tgtgcaagat ataacggaca aaaacgagca gttagaagtc atcactgccg agcacaatcg      1680
     agcgcacaga gcagctcagg aaaacatcaa acaagtgctt cgtgactatt attttcccaa      1740
     tatggccact ttggccaaag aagtggttgc aaactgcagg gtttgcacta aagccaagta      1800
     cgataggcac ccgaagaaac aggaactcgg ggaaacgcct ataccaagtt atactggcga      1860
     aatgttgcat atcgacattt tttcaacaga caagaaacaa ttcttaacct gcgtagacaa      1920
     gttctccaaa tttgcagtcg tccaaccgat attatccaga acaataatcg atgtcacaag      1980
     ccctctactg caaattatta accttttccc cgcaactaag acaatttatt gcgataacga      2040
     ggcggccttc aattccgaga ccatcacttc gatgctccga aacgcctacg gcatttgcgt      2100
     tgtgaatgca gctccgcttc acagcacctc aaacggccag gtggagcgct ttcatagcac      2160
     cctgaccgaa attgcgagat gcctcaaact agacaagaaa atcagcgaca ctacagaatt      2220
     aattttaaag gctacgatag agtacaacaa aagtttacac tcagtaaccc gagagaaacc      2280
     aattgaggtc gttcatgcag tagctcatgt tcgtcgcgag aacgtcaaag acaggctgat      2340
     taaggcacag caagacaata tcaaaaggtg caacgcagcc agacaaaacc gtgttttcga      2400
     ggtaggagaa aaggtgttcc agaagaacaa caaaaggcta gggaacaagt tatgctcaga      2460
     acaaaaggtc gaagcagacc tgggaacgtc tgttctcatt aaggggaggg tggtccataa      2520
     ggacaacctg aaataagttt tccccacaat tagctagtaa gccaacttaa taaactccga      2580
     aactcaaaag caaataaaca gactgacgga cactatcaat aaaattatca gctcccgcaa      2640
     aggcgatttg gttgacactc ctcatttatt cgaaacactg ctggcaaaaa tagaatactg      2700
     aacacggaaa ttcaaaattt aatactaact ataacgctgg caaaagcaaa catagtaaat      2760
     cccacaattc tcgaccacac cgatctgaaa tcacttattg agcaagacac cccaatagta      2820
     agcttaatag aagcttctaa gatcaaggtc cttcagtccg agaacattat ccacatatta      2880
     atagcctacc ctaaagttga gtttaggtgc caaaaggtct ccgtctaccc cgtttcaaac      2940
     caacaaacca ttctgcgact cgacgaggac acgctggcgg aatgcgaaaa ggacacctct      3000
     acagttactg gatgcaccgt gactacgcat aacaccttct gcgaacgagc acggcgcgaa      3060
     acctgtgcta gctcccttca tgctggaaac atcgccaact gccataccca acccagccac      3120
     ctgaaagcga taacacctgt agatgacggc gtcgtgatta tcaacgaagc gacagcgcgc      3180
     gtccgaacag atgatgtagc agaagtgact gtctcaggaa ccttcttgat aactttcgaa      3240
     cggtctgcag ccattaatgg cacagaattt gtaaacttgc gcaaatcacc aagcaagcag      3300
     cctggcaccg tgaggtcacc gctcctaaac atcatcggac atgacccgac attaagcata      3360
     ccactcctgc ctcgtatgaa catcaacaac ttgcaatcaa ttcgagattt caaggaggat      3420
     gtaactgcgg cgggctcacc caaattctgg ttcacggttg gtgcggtcct gaacgtcgga      3480
     ctaattggct cattcgtcct tttcatggtg ctaaggagaa agcgagccac attgagggag      3540
     cagagggctt tggacaactt taatatgacc gaggacggtc atcatcctga gggggggggg      3600
     gggggtagtt aacaactaag catataatat gaactctctc tgtcatacat tgttatttct      3660
     aagtacgcag caggtaatca taagtatttg gttgccctca gcaaacaatg ctgacgcgct      3720
     gccaagaatt ctgcacacag caagtgaaaa cggtcacccg tgctgtttgc ggaagagtgt      3780
     tgagtcggca tgccgactct ggggtatggc gcgatgcatt gacttcgtag ggtaagctta      3840
     agcaaagaca tttctgtaaa gtcagtctca gttcagatcg cattctaata agacgaacga      3900
     ttaaagctcc ggcactgccg taaataaaat tcagtgtgtt atcaattata gttgggaaag      3960
     tcccacaaca taattatcat tgatcccgtt tcgctcgccg gatccatcac acaacataat      4020
     catcattgat ccagtttcaa tcgccggatc caccgttacc tcatcaaagg aagaggccac      4080
     tatcgccagc taattaccca catagcgtcg ctgatcatcg agataacggc ggtagactta      4140
     attggcgccc aaccaataca taagaaccca taccatgtaa gttcataagt gatttcagtt      4200
     tgaagaaatt gttcacgaaa aaaaaataaa gataaactgt aaagtaaagt aaatattgct      4260
     gccttcttct accagcattt cattccttta aatcattgca tacttttatt aaaattgttg      4320
     catactttta ccagcgttcc tggtcaataa aactttgcat actttcggcg gcattatatt      4380
     ttctgctgca tacccttaac aatttttata ataaatattg cataccccaa gatacaccag      4440
     tttctactat tgccaacagt tttacctgcc gatctttctc gatcggccta agtttcgaaa      4500
     agtgccaacc ataaaccaat gagttggaat tatagggaga aaaaacctga atttaatagt      4560
     tccgatagtg aggagggggg aatcaattgc tcaataaatc ctacccctgc agatatcgtt      4620
     gtaactgaaa aaatggagct ggctcaagtt cagactctca tcaggcaagc cttagcggaa      4680
     caagaaaggc agtttcaagc acaaataacc gctttagctt cacgggtgca gagtttgcag      4740
     gtcgaagcgc cgcaaattgt cacatacgag aaaatatccg tcgatcctga cgccaaatgc      4800
     gacattccct tagacattat taaatctgtg ccggatttct ccggtgtaca ggatgagtat      4860
     gtagcgtgga ggcaagcagc catctacgca tacgagttat tcaagggctt tccaaagagc      4920
     acggcgcatt accaagcggt agcaaagcgg t                                     4951
//
ID   Gypsy6-I_Dya repbase;    DNA;    INV; 6290 BP.
XX
AC   chrX;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dya;
KW   Gypsy6-LTR_Dya; Gypsy6-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6290
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1058-1058 (2009).
XX
DR   Genome; chrX; Positions 20665459 20659170.
XX
CC   Positions [4650-5126] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..2255
FT                 /product="Gypsy6-I_Dya_2p"
FT                 /translation="MPVVNTPPRTSSEGNIENNCALCSTVMDNTNPCYHLA
FT                 CKHVFHKNCVEAWLTENSCCYSCNAPINKKEIKVVVGNCSPFRAQPLPVPT
FT                 APVQRGVTTRNLARALAQLEEANPANIPEPLPLNTSGAPSSVLDASQSTEH
FT                 REGIARHPRGRPRSGRPVRTIDSRRTQAVDYNTIQDMIEQTVTRVLSSLSI
FT                 QHLPPPSNSQGPDMTREQASFSSSSISSRQTVDIMQKWGVHFDGSTDGLGV
FT                 EEFIYRIKALTDKTLGSDFTSMCKNMHVLFTGKARSWYWRYHKQVDGIVWS
FT                 NICASLRQHYKDYRSDFMSMELIRARKQKHGEPFSAFYEAVASLIDKASIK
FT                 IEEEEFIEILKNNLLPETRQKLLYQPVHSVGHLRRLVQMSENLSHEISCRT
FT                 EQVKTKSIPNRRQVFALEDHSSEVEEISPTGAEIAALRRSTEKLKCWNCEE
FT                 IGHIWENCLADRRVFCYGCGRPDTYKPQCQNCLQKQSENRPTGAFNKNRMP
FT                 PKI"
FT   CDS           2177..3796
FT                 /product="Gypsy6-I_Dya_1p"
FT                 /translation="MSKLPSKAIGKPTYGSIQQEPNAPENLNPKATLHKPT
FT                 MANCIPMRLRPYEERVKNYAEVRKRLFQDIKPHRNRRTLRLKSFYAEVRRN
FT                 KQLQISTIFNKSSDLRSYAEVSCMGFTELGLLDTGANISCLGEELAQQDFS
FT                 SHPQFKPIKSRAKTASGENQTIIGFLDIELTYNKVRKPLRLYIIPSIKQRL
FT                 ILGHDFWRTFQIAPNIISSVHVPIEDNKLAGENMYPLTSSESQRLAVVKQL
FT                 FPKASERLGRTSLIEHCIDVGNAKPVKQRFYPVSPAVEKLLYAEIDRMLRL
FT                 DVIEPSVSPWSSPMRLVVKPNKIRLCLDARRLNDATKKDAYPLPSIDGIFS
FT                 RLPKANIISKLDLKDAYWQIQLSAESKPLTAFTVPGRPLHQFKVMPFGLCN
FT                 APSTMCRLMDQIIPADLRYCVLGYLDDLCVVSEDFESHSLVLIRLAEEFRK
FT                 ANLTLNMDKSQFGVTSINYLGYVIGSGGICTDPAKISCIVNWPAPKNLKQV
FT                 RGFLGVCGWYRRFIPNFADLTCPITDVLSKKLKFAWPPEASSDG"
FT   CDS           3792..5402
FT                 /product="Gypsy6-I_Dya_3p"
FT                 /translation="MDRLKIILTSAPVLTNPDFEKKFYLHSDASDFGIGAV
FT                 LVQLAEDKAEKPIAYMSKKLSRSQRNYSVTERECLAVVLAIEKFRCYLELQ
FT                 DFEVVTDHSSLLWLMRQQNVTGRLARWIFRLQQFKFSFSHRKGKDHVVPDA
FT                 LSRLFENEINALDMAPIIDLSSEAFNEDTYTTLKTKFTNSEEKFPDIKIVD
FT                 KFLYIRTEHADRNEFQDKQSWKLWVPETLRPKVLRQAHDSLTSSHAGMQKT
FT                 IARLRRNLFWPGLAKDVRDYIRSCDACKENKAPNYTLRPPMGEHCPSYRPF
FT                 QRLYIDLHGPYPRSKQGHVGLLIVLDHFSKYPWLQPLKRFTSTAIIDFLLK
FT                 QVFHSVGVPETIVSDNGVQFKAVEFNAFLTELGVNHVYTALYSPQSNAAER
FT                 VNRSLLAAIRTYLKTDQTEWDRNITSISCSLRSALHQSLGCSPYRALYGLD
FT                 MITHGSDYKLLKNLSLLEEPITPISRSDNLAIIRKDIQANIRRAYDRNVRQ
FT                 YNLRAKPISFKEGQEVFRRNFAQSKFAQNFNSKLGPQFVKS"
XX
SQ   Sequence 6290 BP; 1938 A; 1354 C; 1335 G; 1663 T; 0 other;
     taacttttgg cgcccaacgt ggggcaggcc acggtacgat tacaacgttc agtggtatag        60
     atttcctaat ccaatttatt gtcctttatg ggatttccca aggatactga agtgtggaag       120
     tagttagatc ggcgtgatct ttctatcgca tttcagaggg aaaagtgcga cctacgacgt       180
     tggtattcgg acgcggatat caaaccgaga aacctgaagt gtacaccaac ccatgaattt       240
     aacaaaacat cagctattcg gaaatcttgt gtccctaact atcaatgctc ttttgttcag       300
     tggtagggtt tgtgcagaat accagtcgct tatttgcaag cgaaagggac gagcacttaa       360
     agaatattga tgatttgact ctgatcgaat atcaatactt aaggatcgct cagctggtag       420
     agtgttgttt ccacaggccg ctactgctgc aaatccctta aaacacatct gatagctctg       480
     tgagttgcga gttgtcagta aaaatacgat caagaagtat ctgttgtctg gaacttgtga       540
     ggatgcagct taatgcttcc acttgccgaa cagaaacctg tagaaagtta gtcaacgcac       600
     tcatttcaat cgggaaatca gactttcaat aatccaatcc tcaacgctag ttatagatac       660
     agcaggctaa tacaataacc tccattttat taagttgcca tcaaatgtca aattcaggat       720
     acaaatctaa agaaaaaaaa aaattaagat aaccagcaat gccagtagtg aatacgcctc       780
     ccagaacttc ttctgaaggt aatattgaga ataattgcgc tctttgctca acggttatgg       840
     ataacaccaa tccttgttat catttagcgt gcaagcatgt ctttcacaaa aattgtgtag       900
     aagcctggtt aaccgagaat tcgtgttgtt attcttgtaa tgctccgatt aataaaaaag       960
     agattaaagt agtggttgga aattgttcgc catttcgagc gcaaccattg cctgtgccga      1020
     cagcgccggt tcagcgtgga gtaactacta gaaacttagc cagagctcta gcccagttag      1080
     aagaagctaa tccggccaac ataccggaac cacttccttt gaataccagt ggtgctccgt      1140
     cttctgtatt ggatgctagt caaagtaccg agcatcgtga gggtattgct agacaccctc      1200
     gtggtaggcc ccgttcgggt agaccagtca gaaccatcga ctcacgtcga actcaagcgg      1260
     tggattataa tacaattcaa gatatgatag agcaaaccgt taccagggtt ttatcgtcct      1320
     tatccataca gcaccttcca ccaccaagca attcccaagg gccggacatg actcgggagc      1380
     aagcctcttt cagttcgtcc tcaataagtt ctcggcagac agtcgacatc atgcaaaaat      1440
     ggggagtaca ttttgatgga tctactgacg ggttaggcgt tgaagaattt atatatagaa      1500
     ttaaagcgct cacagacaaa actttgggca gtgactttac aagtatgtgt aagaacatgc      1560
     atgtattgtt caccggtaag gctagatcct ggtattggag ataccacaaa caggtagatg      1620
     gaatagtttg gtctaacatt tgtgcgtcac tccgtcaaca ttataaggac tatcgatcag      1680
     attttatgag catggagttg ataagagcac gaaagcaaaa acacggtgaa cctttttccg      1740
     ccttctatga ggcagtggct tctttaattg ataaggcatc gataaaaatt gaagaagagg      1800
     agtttattga aatcttaaag aacaacctgt tacccgagac taggcaaaag ttgctgtatc      1860
     agcccgtgca ttcggtggga cacttacgtc gcctagtaca aatgagtgaa aacttatccc      1920
     atgaaatcag ttgccggaca gaacaagtta agacaaaatc aattccaaat cgccgacagg      1980
     tttttgcgtt agaagatcat agctcggagg tagaagaaat ttctccaacg ggtgcagaaa      2040
     ttgctgcttt acgtagatct acggaaaagc taaagtgttg gaactgcgaa gaaataggtc      2100
     acatctggga gaactgctta gcagatcgtc gagtattttg ctacggctgt ggcaggccag      2160
     acacctacaa gccgcaatgt caaaattgcc ttcaaaagca atcggaaaac cgacctacgg      2220
     gagcattcaa caagaaccga atgcccccga aaatttaaat ccaaaggcca cattacataa      2280
     gccaacgatg gctaactgca ttccgatgcg attgcgccca tatgaagaac gggtcaaaaa      2340
     ctatgctgaa gtaaggaagc gtctatttca ggatatcaag ccgcaccgca atcggcgcac      2400
     acttagatta aagtcatttt atgccgaggt taggagaaat aaacaattac aaatttccac      2460
     tatctttaac aaatcgagtg acttgcgaag ctatgctgaa gtatcgtgca tggggtttac      2520
     agaacttggt ctgttggaca caggagcgaa cattagttgt cttggagaag agctagcaca      2580
     acaggatttt tcaagtcatc ctcaatttaa acctatcaaa tcgagagcta agacagcaag      2640
     tggtgaaaat caaaccataa tagggttcct agacatcgaa ctaacctata ataaagttag      2700
     aaaacccctg cgtttgtata taattcccag tatcaaacaa agacttattc ttggccacga      2760
     cttttggaga actttccaaa ttgctccaaa tattatatca tccgtacacg taccaatcga      2820
     agacaataag ttggccgggg aaaacatgta tcccttaacg tcgtctgaaa gtcagcgtct      2880
     agcagtagtg aagcaattat ttccaaaagc ttcagagaga ttaggtcgca cctcacttat      2940
     tgaacattgc attgacgtcg gaaatgcaaa gcccgttaaa cagaggttct atccagtcag      3000
     tcccgcagta gagaaattac tgtatgcaga aattgatcga atgctgcgat tagatgttat      3060
     tgagccttct gtaagcccat ggagttctcc aatgcgtctg gtcgtcaaac ctaataaaat      3120
     tcgactttgc ctggatgcac gcaggcttaa cgatgctacc aagaaggatg cttatccgtt      3180
     gcccagcatt gacggaatat tttcccgatt gcccaaagct aacatcatat ctaagctcga      3240
     tttaaaagat gcttattggc aaatacagct cagtgctgag tcaaaacctt taactgcatt      3300
     cacggtgcca gggcgaccgt tacaccagtt taaggttatg ccattcgggc tttgtaatgc      3360
     accatctacg atgtgtcgct taatggatca gatcattcca gccgatctgc gctattgtgt      3420
     cttgggatac ttagacgatc tttgcgttgt gtccgaagat tttgagtctc actccttagt      3480
     actgattcga ttggccgagg aatttcgcaa agccaatctt actcttaaca tggacaaaag      3540
     ccagtttgga gtaacaagca tcaattattt gggttacgtc attggtagtg gaggtatttg      3600
     tacggaccca gctaaaatct cgtgtatagt aaattggcca gctcccaaaa atctgaaaca      3660
     agtaagggga tttcttggag tttgtggctg gtaccgtcgg ttcataccca atttcgcaga      3720
     tctcacatgt ccaatcacag atgtgctttc taaaaagtta aaatttgctt ggcctccaga      3780
     agcaagtagc gatggataga ctaaaaatca tattgacctc tgcaccggtt ttaacaaacc      3840
     cagactttga gaagaagttt tatcttcaca gtgacgccag tgatttcggc atcggcgcag      3900
     tgttggttca actagcggaa gataaagctg aaaagcccat tgcctatatg tcaaaaaaat      3960
     taagtcgatc acaacgtaat tatagcgtca ccgaacggga atgtttagca gtggtattag      4020
     ccattgaaaa gtttcgctgc tacttagaac tgcaagactt tgaagtagtt accgatcatt      4080
     ctagcttatt atggctcatg cggcaacaga atgtaacagg aagactggct aggtggattt      4140
     ttagattgca acagttcaaa ttttcattct cgcatcgaaa aggaaaagat catgttgtcc      4200
     ctgacgcttt gtctagacta ttcgagaacg aaataaatgc attagacatg gcccctataa      4260
     tcgaccttag ctcggaagcg tttaacgagg acacttatac gacgcttaaa actaaattta      4320
     cgaatagtga agaaaaattt cccgacatta aaatagtaga taaatttttg tacattcgta      4380
     cagaacacgc tgaccgaaat gagtttcaag acaaacagtc ctggaaactc tgggtgcccg      4440
     aaacgttaag accgaaagtg cttcgacagg cacacgatag tcttacgtcc tcccatgccg      4500
     gaatgcagaa gaccatcgca aggctacgcc ggaatctatt ttggcccggg ttagcaaaag      4560
     atgttagaga ttacattcga tcctgtgacg catgtaagga gaacaaagcc ccgaattata      4620
     cgttacgtcc acccatgggt gagcattgtc catcgtaccg cccatttcaa cggctatata      4680
     tagacttgca cggaccctat ccccgtagta agcaaggaca tgttggattg cttatagtat      4740
     tagaccactt tagcaaatat ccttggttac aacccctaaa aagatttacc tcaacggcaa      4800
     tcatagattt ccttttaaaa caggtctttc atagtgtagg tgttcccgaa accatcgtaa      4860
     gcgacaatgg agtccaattt aaagcggtgg aattcaatgc ctttcttacg gaattaggag      4920
     taaaccacgt ctataccgca ttatactcac cacaaagtaa tgcggccgaa agagtaaatc      4980
     gttctctatt agctgccatc cgcacttact taaaaaccga ccaaaccgag tgggacagaa      5040
     acatcactag tatctcatgt tcattaagat cagcgttgca tcaatcgtta ggatgttcac      5100
     cataccgtgc gttatacgga ttagatatga ttacccatgg atctgattat aaactgctaa      5160
     aaaatttatc cctattggaa gaaccgataa caccgatttc ccgatctgac aatttagcca      5220
     tcattcgaaa agacattcag gccaatattc gtcgtgccta tgatcgcaat gtgcggcaat      5280
     ataacctacg cgcgaaaccc atttccttta aggaaggaca ggaagtattc cgtcgaaatt      5340
     ttgcccaaag caaattcgcg cagaatttta actcgaaatt aggcccacaa tttgtaaagt      5400
     cctgaatcaa gaaaaaacta ggaaattgtt attaccagct tgaaaattta caaggaaaag      5460
     aggtaggaac gtatcatgca aaggacattc gaagctaatt cccgctaata ttgcatctaa      5520
     cgaagaaata ttatcgggtg gtgtaatggt cggcatggta agcgaaaaga aattgcaaag      5580
     aaaaaaaatt ataaatgcaa tgttggccac ttacaactga gaacttgact ctagggatgg      5640
     gttagttcat tcagtgggta tgcttttagg ctgtggtcga taacctcagt ctaatcatcg      5700
     attaacatgt ccgaaaacgt tgcccaacac tgagagcgtc ttccaacttt ccaatagaag      5760
     cacagctata attattggaa tttggtggta tataaatgcc cacgcggcta cagtcccgct      5820
     cttttcgtaa ccagaaacac attatgctgc taaatcattg tgcaagtact cttaatagag      5880
     ttaaagatta agcgccacta cttacaagcg tcgtctgatc ggtgacgtga tctgatcaca      5940
     tactggaggg aaagaacgaa actgccccaa aattttaagt gacaactggg ttcttcgcgg      6000
     tggttgcctc gccttggagc cccaaccacg tgatttgcat aaccccctcg gagggaattc      6060
     tcccaagaga ataggtatgt cgccgacttg cactagtgcc cccaactaaa acccgctttg      6120
     ttggcagtat caagttttca tctggccacc gggcctctgc aaatactggc cggtcggagg      6180
     gattctgacc accaactagc gttattatac ccctggctac ggataactga agcaattgtc      6240
     tttctgggag ctacgccaac gtcccgaagc cttaaccttc gattaaccac                 6290
//
ID   GYPSY6-LTR_AG repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   19-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY6-LTR_AG is an LTR of the GYPSY6_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY6-I_AG; GYPSY6-LTR_AG; GYPSY6_AG; Gyspy clade;
KW   GYPSY31-LTR_AG.
XX
NM   GYPSY6-LTR_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-181
RA   Pavlicek A., Kapitonov V.V. and Jurka J.;
RT   "GYPSY6_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 82-82 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY6-LTR is a long terminal repeat of GYPSY6_AG (its internal
CC   portion is deposited as GYPSY6-I_AG).
XX
SQ   Sequence 181 BP; 76 A; 33 C; 31 G; 41 T; 0 other;
     tgtaaacaat ttaaaattag gttacttata cttatctcgg gtgcaataat ctaatctaca        60
     agaactgcaa taaaatagga atgacagcga gcagaacggc acttcctacg acacacgaag       120
     aaacgataga aagccctcgt gtacgaaaaa agcaacaatt gtaaaaataa agctgtttac       180
     a                                                                       181
//
ID   Gypsy6-LTR_AP repbase;    DNA;    INV; 616 BP.
XX
AC   Contig9985;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6AP;
KW   Gypsy6-I_AP; Gypsy6-LTR_AP.
XX
NM   Gypsy6-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-616
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 448-448 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 616 BP; 184 A; 81 C; 102 G; 249 T; 0 other;
     tgtattgaca ttatattgta ttgtatattg ataatgtatt gacattatat tgtattgtat        60
     attgataatg tattgacatt atattgtatt gtatattgat aatgtattga cattatattg       120
     cattatgtat tgatgatgca tatgctcacc aattgcattc tattttttta aaaaaaaaag       180
     actgtttatt atataatttt gttattcttt caaattgtta tgagtggagt ccactcaaag       240
     tcaagtatgg ccgagttgta gtaaaattat tattattatt attaatattt attataagtg       300
     gataatattt gtcaattggt cgcgccacag tcgattatca cttttaatcg actgagcacg       360
     acaccaaccg attattatgt tcctggcgac cgacggtaat tcattactgt ccgcggccac       420
     cgctagttgc taagatatat attgtgatat gcatttctgt accgttgttt taatttaatt       480
     atcatgtgta atgtgtattc aattattaat aaatgtgcgt tgattagctt aatgaaccgt       540
     ctattaagtt aattatttaa ttgtacctaa attgtcctga cacattgacg tggtggtttg       600
     gagagacctc accaca                                                       616
//
ID   Gypsy6-LTR_Dmoj repbase;    DNA;    INV; 966 BP.
XX
AC   scaffold_6496;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dmoj;
KW   Gypsy6-LTR_Dmoj; Gypsy6-I_Dmoj.
XX
NM   Gypsy6-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-966
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1059-1059 (2009).
XX
DR   Genome; scaffold_6496; Positions 26417505 26416540.
XX
SQ   Sequence 966 BP; 286 A; 145 C; 253 G; 282 T; 0 other;
     tgtgaggcgg cgccccagtt accgcctcac gattatttga aatgaagaat gtttattttt        60
     tatgaaagag agaggagatg ttgatttgcg aattggaatt aagagagtga agaaatgttt       120
     attttagggt tgaaatgaag aaatgtttat ttttattgga atcgaagaaa cgtttgttgt       180
     tattgaattg ttatcggaat ttatgaaata gttagtttat tttgtagtca ttaagattta       240
     gagttaagtt agtaaattaa gtaggtttaa ttagggttag ttttgtagtc ggtaagattt       300
     agctgtagcg gttaggaatt aagttagtga taattaagta aaaattagta tttgatataa       360
     ttttgtcatt tgaattgata tttgaaaatg ccgcccaaag cgctgacgat ttatcggcga       420
     tcggcggcgc aaccctgcgt ggagagttgt gagcggagag ttgcgtcgcc gacgccgagc       480
     gctttgggcg agcgcaagaa aagagacagt ttttagtcga gttttgggag tcgaatcgag       540
     aagagagtcg ggattgagta gcgagaagga gcggttgacc gcgaagagaa ggtgatagag       600
     ttccttttaa atttaagcgc gtagtggaat cttgtgaaac gcggctaggt taagtgacat       660
     tttgaataaa agaagaaaga aacacggaaa gagatcgacg actttcattg gcgtaaacgg       720
     cgactggagc aaaatttgac ggcgacgagg agtcaagaat ttgggtgaga agacgctgga       780
     gaagaaaaag gtacacgtga gtggcggtcc ccatattaga tttccccccc ctctcccatt       840
     tcccggccaa taacgttaga tattcccccc ccccctggtg tctcactatt tcatacaaat       900
     aaatttcttg tgagtacacc ctgggtagac tgagtctacc ccagcgttta aatttactac       960
     cttaca                                                                  966
//
ID   Gypsy6-LTR_Dpse repbase;    DNA;    INV; 887 BP.
XX
AC   Unknown_group_213;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dpse;
KW   Gypsy6-I_Dpse; Gypsy6-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-887
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1060-1060 (2009).
XX
DR   Genome; Unknown_group_213; Positions   15654   14768.
XX
SQ   Sequence 887 BP; 287 A; 227 C; 195 G; 178 T; 0 other;
     tgtgttccct gcgcaaccaa aagatctacc atccgcactg gctctggcca gggaagctga        60
     ggctagcatt gaaagaagca tgtttgcgaa ctcttacgct aaagccttgc aagaccgagc       120
     gcaaattgcc gaaactaaca aaaaccgtgc ccaaggcaga caaaccaagt ttaacaaaga       180
     tgagcaaaat caggagagaa atccccattt tgaaaaacgc caaaagggcg gtccccagcc       240
     tcaggcccct aaagacaatc aatccgaagc tccacagccc atggaagttg actcttcctc       300
     cagatttaga caaaaaaccg actacagcag gcgtcagact tacgagtcca acgcagcaaa       360
     atgcaagaat tcgtcagagc gttcaacagg tcaaagacgg caacgcatta acaatgtggt       420
     acaatcagac tccaaagagg ccgtaacaga attcgagaag gcggccaaag aggcagttga       480
     agaattagag agtgagaacg agtacgcacc tggtgacgac tcaattaatt ttttagggaa       540
     cactcccggc ttccgtacat tcaacgacgg ttggctggga gaactctgaa gatgttaatt       600
     gacactggcg cggcaaagaa ttatgtgaag cccttaacag agctaaaggc cataacgccg       660
     gtcgccaagt cattctcggt aaactcgatc cacgggtcta ccgaaatcaa gcgcaagtgc       720
     ttgatgaata ttttccagca tacctccccg ttttttctcc tcgataccct aagttctttc       780
     gacgccatca taggcttcga cttgctaaca caagccggag tcaaattgaa cttggcaaaa       840
     aacactctgg aataccaggg tacatctgaa aaactccagt actatca                     887
//
ID   Gypsy6-LTR_Dya repbase;    DNA;    INV; 1356 BP.
XX
AC   chrX;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6_Dya;
KW   Gypsy6-I_Dya; Gypsy6-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1356
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1061-1061 (2009).
XX
DR   Genome; chrX; Positions 20659169 20657814.
XX
SQ   Sequence 1356 BP; 426 A; 253 C; 247 G; 430 T; 0 other;
     tgattggaca ccccgaccta tctatatagg tatagatcgg tgcgcagtag aacacctaca        60
     actaacttcg caccgcagga tgagcacaag ccgcaccagt tacttttccc agtcaggatc       120
     atttatggaa acccccaaaa cctggatcgt cagcggataa gggattagga taaaagtagt       180
     gcaggttgct agaccatacg gagtgtgttt ttgcgagagt gtgttttatc gtaaccgccg       240
     tcatgtagcc ccgtaatttt tatacttcaa ttaatctccg ctagcatcca tcatttcacc       300
     gctggaaggc ctttcaacgc tggaactgga cacatgtgag ttcgtaaagc taagagtaat       360
     ttcgtatttg tcgtagagta tgccatacct acattcttac aagaacattt caaatgaata       420
     taaagattag ggggtgactg aaaagaaaac aaacaaatta tatatctaaa ccttgaaatt       480
     aaacgaaatt taaatactat agagcccgtt acgaaagaaa atttttttta atttttattt       540
     ttttcataac gcgactccat atggcctagg attcttattc aaaaaaatat ttctaacctt       600
     atgcatagtt cgtttgatag aaacctcaac atttaaccat aaatattaag ataagacatc       660
     acaaaatgaa ttaaatgaaa tacttttaga tctaagaaaa tgtactgaaa ggaaatttcg       720
     atagtagttt aagtaaagga aggagatttt tttagttttc ttactttgtt ttgattaagc       780
     gctccatgaa gttgcataaa tgaatactat tactacatct tatttgttcg gccatccagc       840
     ctcttttgta aataaattta ttatatgaac ttaaaacaaa tcatgaattg ctaaacctgt       900
     aattatcctg atttgacatg gcagcttaaa taaaatcgga agtctctata gggaattttc       960
     aaagatgcta tcgtgaagat tatggtcggg ttgggtagag aaagcgaggt tcaaattcca      1020
     ccaaagacct tgctaccgtt tagtcttgct gtcgtctgta acgttcttct tttttttttt      1080
     tcactttgcg agttccgttt tattttttag ttttcttctt ttagtatgga atgtacaagc      1140
     ctagtaactt atagtttccg taggaatcct aacaattaaa gtatgtgtgg accgttatga      1200
     aaggcaatcc gacccacccc atcgccgaaa gagctaaggc accagaggat tccgcctgcc      1260
     attattcata atcgagtaga agagtgagag cacgaatcac cagtgtttgg gtactgttat      1320
     acccctcggc ttctcatgct taagtcaacc attaca                                1356
//
ID   Gypsy6-NVi_I repbase;    DNA;    INV; 5046 BP.
XX
AC   AAZX01003764;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6-NVi;
KW   Gypsy6-NVi_I; Gypsy6-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5046
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1124-1124 (2007).
XX
DR   Genome; AAZX01003764; Positions    5527     482.
XX
CC   Positions [2236-2778] - Reverse transcriptase
CC   Positions [3877-4356] - Integrase core
CC   LTRs are 77% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..2144
FT                 /product="Gypsy6-NVi_I_2p"
FT                 /translation="MSDIDDFEKFVEDKQLHDIISGNMADKQLQEALAEIE
FT                 RQKARRLEERLEADKKLKELQAALQQQRNQQDSQNSNNPSDTSTDSLASAI
FT                 TSLSDVMKSQSETLSSFQGILKNITQVDQGQVMSAASAQSIIREFYGNEGP
FT                 EKAQVWLNELKNTKTLYNWSDAIVLSVAKSRLKKGAWKWLMTRSTTVITFE
FT                 AFLEAFSAVFTYKRSRSEKLKVMMARTQSRNEPIQDYFLDKVWLCEGLEFT
FT                 VNDIRDEVAAGLWSRELSQHILGKSYLTSDEILRDLFRIEKIQNGRVQRIN
FT                 EQREQRTTTQDSKYGGGTNNSTKSWRADRTSNGVGGGVSASGSFTSTARDG
FT                 ATDKTQGNSKETRDAAVKCYNCNQIGHISRECTKPKREITCYLCKRPGHIA
FT                 TRCTFKPNNSTDTSKLESVNLVNSVNTSNLGNKFIREVKIGSLKTTALIDM
FT                 GATVCTIKSTAVLCAGYKVNRVRSVLEGFGGQKVESPGVVVESIQIDDLKP
FT                 RELTFRIVSDTAQKEDVIIGQPFTEALDISYTRSGNKLKFFDTNIIETNDT
FT                 SSVKIYSLDNVELESGEVKFINVNVSSHELVIPVINNTDKVNRINVNEKVG
FT                 ESILSIEPVNEMEPRKELVKSDEIVTDENVTFEQKNELLQILNSNRTCIAK
FT                 NLSEIGKTNLMTMDIGRYGY"
FT   CDS           2137..4974
FT                 /product="Gypsy6-NVi_I_1p"
FT                 /translation="MDIEFEDDRVISSKPYKLNATDKRDLDNLVIEYKKAG
FT                 IITETDSKHASPAFVVRKKDGSASMVIDYRKANRITKGVHFPIPNFDDLLE
FT                 KLSNARIFITVDLYRGYLQMPLTERAKPLTAFITETTTGQFERAMLGLKCA
FT                 PMYFAKLMEKVLGDARRHGIAFNFFDDIFIYAENWDQLMKNFKIVLQNLKD
FT                 AGLTLNLKKYRFGMRKVEFLGYVLGDGELKPGDRKIVAIEQFPRPSDKHEV
FT                 RRFVGLASFFRRFVPKFADKIKPLLLLLRKDAKFEWNREQEMSFINVKSIL
FT                 VSKPVLKLYNQNAYRTELHTDASSVGIAGMLLQSDNEGEPLSLVYAVSRCT
FT                 TEVESKYHSSRLELMAIAWSLQRLRNFIIALKFTVVTDCQSLVYLNAWKTK
FT                 NAQISRWMSELSEYNLEIKHRRGELMQHVDALSRAPILIDPIINSINTITE
FT                 VRTNDYEILVFQRSDPFILEIISILRKSEGERSKLEKSKMKDFILRGGLLY
FT                 KKVIRNDKEIKLFVVPNAMRKSLVIRYHDLCNHFGVDKTVKRIEEYYYFPR
FT                 LRRYVKIHIKNCLECIMSKRKAGPGEGELHPIPPGKRPFELIHIDHVGPFP
FT                 TTSRGNIYILGIIDNLTKYVKFEPVKNVTTQVTVKKMEEFVNRFGAPDRIV
FT                 SDRGTCFTSHLFQEFCLRHGIKHSLNSSRHPQANGLIERMNQTLIPALRIS
FT                 EHNNLNYNWDRDVAIVERNINSTISTATGIEPYRALLGYLPRFNDGNLRDL
FT                 TKHCETYTPPNEIQCKLRDRIIAEQAKYKNYYDKNRYKNVKYNIGDIVFMK
FT                 RNAIASGESTKLQNPYGEPLVITEVYPNDIYRVKKLNDYGDRGYETTANVS
FT                 QLKIWKNSESIHSDDLCDDGENSDHDIEYNNDCNDNNLDLENNIIDTPDNV
FT                 DNQTENVNKNTLDNSIVGKNFELVERPKRVRKTPTYLRDYIV"
XX
SQ   Sequence 5046 BP; 1832 A; 687 C; 1013 G; 1514 T; 0 other;
     taattaaaag ttgaattata ataattcaga agtgggatat tccaaaaatt taaggaagac        60
     aagatttgaa cgaacagtga aggttgtgac aacggatttt gagttccgag aattgtggct       120
     cgtcgaatgt tgtgttgatg tcggatatcg acgattttga gaaatttgta gaggataaac       180
     aattacatga tataatatct ggcaatatgg cggacaagca gttacaagaa gctttagctg       240
     aaattgagag acaaaaggca agaagattag aagaacgcct tgaagccgac aagaagttaa       300
     aggaattaca agctgcacta cagcaacaaa ggaatcaaca ggattcacag aattctaata       360
     atcccagtga cacatctact gactctttag cctcagctat tacgtctctc agtgatgtaa       420
     tgaaaagtca gtcagaaact ctttcaagtt ttcaaggaat attgaaaaat attactcagg       480
     ttgatcaagg tcaagttatg tctgcagcta gtgctcagag tattattcgt gaattttatg       540
     gaaacgaagg tccagaaaag gcgcaagtat ggttaaacga gcttaagaat actaagactc       600
     tatataattg gagtgacgct attgttttga gtgttgccaa atcgcgtcta aagaaaggag       660
     cctggaaatg gctgatgaca agatcaacta cagtcataac atttgaagct ttcttagagg       720
     ctttttcagc agtgtttacg tataaaagat cgcgtagtga aaaattaaaa gttatgatgg       780
     cacgtacgca aagtcgtaat gaaccaatac aagactattt tcttgataaa gtgtggttat       840
     gtgaaggact agaatttaca gtgaatgata tacgtgatga ggtagcagct ggcttgtggt       900
     caagagaatt atcgcaacat attttaggta aaagttattt aacgagtgat gaaattctac       960
     gagacttatt tcgcattgag aaaattcaga acggccgagt tcaaagaatc aacgagcagc      1020
     gtgaacaacg aacgacaaca caggattcca agtacggagg aggaaccaat aattccacga      1080
     aatcttggag agcggacaga acaagcaacg gcgtcggcgg cggcgtctca gcgtcgggga      1140
     gcttcacgtc aacagcgaga gatggagcca ctgacaagac tcaagggaat tcgaaggaga      1200
     cacgcgatgc tgcggtaaag tgttacaatt gtaatcaaat cggacatatt tcgcgtgaat      1260
     gtacaaagcc gaaacgagag attacgtgtt atttatgtaa acgccccgga catattgcga      1320
     cgcgatgtac tttcaagcca aataatagta ctgatacatc taaattagaa tcagtaaacc      1380
     ttgtaaatag tgtaaatacg tctaacttag gaaataaatt catacgtgag gtaaaaatag      1440
     gctcattgaa aactacagca cttatagata tgggcgcaac ggtgtgtact ataaagtcta      1500
     cagctgtttt gtgtgcaggt tacaaagtaa atagagttcg ctcagtttta gaaggttttg      1560
     gaggtcaaaa ggtagaatct ccgggtgtcg ttgtagaatc tatacagatc gatgatttaa      1620
     aaccacgtga acttactttt agaatagtat cagatacagc acaaaaggaa gatgtcataa      1680
     ttgggcaacc atttacggaa gcgcttgata ttagttatac tcgttctggt aataaattaa      1740
     aattttttga taccaacata attgagacta atgatacatc atcggtaaaa atttattctt      1800
     tagataatgt tgaattagaa tctggtgagg ttaagtttat aaatgttaat gtaagctctc      1860
     atgaattagt aatacctgta ataaataata ctgataaggt taatcgaatt aacgttaatg      1920
     aaaaggtcgg tgagtcaatt ttatcaattg aaccggtaaa cgagatggaa ccgcgtaaag      1980
     aattagtaaa atcagacgaa attgtaacgg atgaaaacgt aacgtttgaa caaaagaacg      2040
     agttgttaca aattttgaat tcaaatagaa cttgtattgc gaaaaattta agtgaaatag      2100
     gtaaaacaaa tttaatgact atggatattg gacgatatgg atattgaatt tgaagatgat      2160
     agagtaatta gctcaaaacc atacaaatta aatgctactg ataaaagaga tttagataat      2220
     ttagtcattg agtacaaaaa ggctggaatt ataacagaaa ctgattcgaa gcatgctagt      2280
     ccagcgtttg ttgttcgcaa aaaggatggt tcagctagta tggttataga ttatcgaaag      2340
     gctaatagaa ttactaaggg tgtacatttt ccaataccta attttgacga tttgcttgaa      2400
     aaattaagta atgctcgtat tttcataaca gttgatctct atcgtggata tttacaaatg      2460
     cctttaacgg aaagggccaa acctttaact gcttttatta ctgaaacgac gactgggcaa      2520
     tttgagagag ctatgcttgg tctaaaatgc gctccaatgt attttgctaa attaatggaa      2580
     aaggtacttg gtgatgcgag aagacatgga atcgctttta acttctttga cgatatattt      2640
     atttatgctg agaactggga tcaattaatg aaaaatttta aaatagtatt acaaaacctt      2700
     aaagatgcgg gattaacttt aaatttaaag aagtatagat ttggaatgcg aaaagtagaa      2760
     tttttagggt atgtattggg agacggtgaa cttaaaccgg gtgatcgcaa aattgtagct      2820
     attgaacaat ttccacgacc aagtgataaa cacgaagtac gaagattcgt agggttggct      2880
     agctttttca gacgttttgt acctaaattt gcagataaaa taaaaccact attactatta      2940
     ttgagaaaag atgctaaatt tgagtggaat cgtgaacaag aaatgagttt tataaatgta      3000
     aaatcaatat tagtttcaaa acccgtatta aaattgtata atcagaatgc ttatagaact      3060
     gaattacata ctgatgcttc ttcagttgga attgctggaa tgttattaca atctgacaat      3120
     gaaggagaac ctttaagttt agtgtatgct gtaagtaggt gtaccactga ggtagaatct      3180
     aagtatcact ctagcagatt agagcttatg gccattgcat ggtctttgca acgattacga      3240
     aattttatta ttgcgttaaa atttactgtt gtaactgatt gtcaaagtct tgtttattta      3300
     aatgcatgga aaactaaaaa tgcgcaaatt tctagatgga tgagtgaatt atctgagtat      3360
     aatttagaaa ttaagcacag acgtggagag ttaatgcaac atgttgatgc tttatctaga      3420
     gcaccaattc taatcgaccc tattattaat tctattaata ctattactga agtaagaaca      3480
     aatgactatg aaatccttgt atttcaacga tctgatccat ttattttaga aataatatcc      3540
     attttacgaa aaagtgaggg agaacgtagt aaattagaaa agagtaagat gaaggatttt      3600
     attctgcgag gtggtttgct atataagaag gtaattcgaa acgataagga aattaaatta      3660
     tttgttgtac ctaatgcaat gcgaaaatca ttagttatac gatatcacga tctttgtaat      3720
     cattttggag tcgataagac tgttaagcgt attgaagaat attattattt tcctcgattg      3780
     agacgatatg taaaaataca cattaaaaat tgtttagagt gtattatgtc aaagcgaaaa      3840
     gcaggtccag gtgaaggtga attgcatccg attccgccag gtaaacgacc atttgaactt      3900
     attcatattg atcatgttgg cccatttcca actacttctc gaggaaatat ttatatactt      3960
     ggtattattg acaatttaac taaatatgtt aagtttgaac ctgtgaaaaa tgtaaccacg      4020
     caagttactg ttaaaaagat ggaggaattt gtaaatagat ttggagcacc ggatagaatc      4080
     gtatctgatc gcggtacatg ttttacatca catttatttc aagagttttg tttaagacat      4140
     ggaattaaac atagtcttaa ttctagtaga cacccacaag caaacggtct aattgaaaga      4200
     atgaatcaaa cattaatacc agctttaaga attagtgaac ataataattt aaattataat      4260
     tgggatcgcg atgtagcaat agttgaacga aatattaatt ccacaattag tactgcaact      4320
     ggtatagagc catatagagc gttattagga tatttaccta gatttaatga tggtaatttg      4380
     agagatttaa caaaacattg tgaaacttac actccgccta acgaaattca atgtaaactg      4440
     cgtgacagaa tcatagctga acaagctaaa tataaaaatt attacgataa aaataggtat      4500
     aagaatgtta aatataatat tggcgatata gtatttatga aaagaaatgc gattgcttca      4560
     ggggagtcga ctaagcttca aaatccttat ggagaacctt tagttattac agaagtttac      4620
     cctaatgata tatatagagt taagaaacta aacgactatg gagatcgtgg ctatgaaact      4680
     actgcaaatg tatctcaatt aaaaatttgg aaaaattctg aaagtattca ttctgatgat      4740
     ttatgtgacg atggagaaaa tagtgatcat gatattgaat ataataacga ttgtaatgat      4800
     aataatcttg atttagaaaa taatattata gatacgcccg ataatgtaga caatcaaaca      4860
     gaaaatgtaa acaaaaacac tttagataat agtattgttg gtaaaaactt tgaattggtt      4920
     gaaagaccta aacgtgtacg aaaaacgccg acttatttaa gggattatat tgtataatta      4980
     ttttattatt atatttaatg attttgtaaa tgtttgggga ccaaacatac gtttcggatg      5040
     gccgat                                                                 5046
//
ID   Gypsy6-NVi_LTR repbase;    DNA;    INV; 474 BP.
XX
AC   AAZX01003764;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6-NVi;
KW   Gypsy6-NVi_I; Gypsy6-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-474
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1125-1125 (2007).
XX
DR   Genome; AAZX01003764; Positions     481       8.
XX
SQ   Sequence 474 BP; 173 A; 43 C; 67 G; 191 T; 0 other;
     tgttatagtt cataaattag aatacacaca catatatata tatatatata tatatatata        60
     tatatatata tatatatata tatatatata tatatatata tatatttagt ttcacttaaa       120
     tctaaaagat ggcgctataa gaatagtaga catgttcgtt gctctaggcg tgctgctgcg       180
     agagaaagaa tacgtttgac tgccgagcag tgtggacgca tggcgtcgtt aagttcgaat       240
     cgggaaaaag cataattctt gttttaggca gcttgctgcg aacttattat tattattata       300
     tttatttttg ggattatttt aaaataaatt tattattcta aaggtttaat gaaaagttga       360
     ttagactgtg tgtgtgtgtt tattttatcc tgaccaatat atatatatat atatatatat       420
     atatatatat atatatatat atatatatat atatatatat atatatatta aaca             474
//
ID   GYPSY60-I_AG repbase;    DNA;    INV; 4628 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY60-I_AG is an internal portion of retrotransposon GYPSY60_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY60-I_AG; GYPSY60-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY60_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4628
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY60_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 159-159 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY60_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY60-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies. The consensus presents two ORFs. ORF1
CC   encodes a 1109-aa GYPSY60_AG1p
CC   gag+protease+reversotranscriptase+RNase polyprotein (pos.
CC   216-3542) and the ORF2 encodes a 423?aa GYPSY60_AG2p
CC   containing only the integrase (pos. 3346-4614). The sequence
CC   of the LTRs flanking GYPSY60-I_AG is deposited as
CC   GYPSY60-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           3346..4614
FT                 /product="GYPSY60_AG2p"
FT                 /translation="KTGGHVTLPLAQIHLVITAGRKTIQRWEGCIFVGERV
FT                 LIPEKLRKQCLSQLHRGHPGIQRMKAIARSYVFWPSLNEDIIDLVSNCHSC
FT                 ALAAKSPAHADPLPWPKTTTPWERVHVDYAGPIDGDYFLVVVDAHTKWPEI
FT                 IRTASITARITVSILRGLFARFGMPTTLVSDNGTQFTSGEFSEFCLSNGVH
FT                 HITSAPFHPQSNGQAERFVDTFKRSLTKIRVGGAPLQEALDLFLQTYRTTP
FT                 NPQLEQNKTPAEVMFGRPIRTCFDLLRPPRKIQHDFREGNERSFERDDLVY
FT                 AKAYSRNNWHWVPGRVIRKRGNVTYEVLTGHRSVIRHINQLKRRGPFSSPG
FT                 PMTERFNPLPLDVLLDSWSIPVTPSVLPDVYPTQLAPPVATPTEPPSLPPH
FT                 RSIPQHQRSPRRSSRSRRAPRRFDPYLRY"
FT   CDS           216..3542
FT                 /product="GYPSY60_AG1p"
FT                 /translation="MNSPGDQPPSEEQRRASQNWYSVPGAASMPQQPQQPS
FT                 LVAVPPNLQSAMPSAYQNPAPSQNFVEGSSHQAASSHQATSSHQAASSEQM
FT                 MQLIILMQKQISQLTLMQNNSATAKPPENVLTSAPFAEQVLDSLSHHIKEF
FT                 HYEEEAKMTFASWFARYEDLFERDASRLDDSAKVRLLIRKLGAAEYERYAN
FT                 FILPKSCRDFSFSETIKKLSSLFGVKESLLHRRYKCLNLMKRRSEDYLAYS
FT                 CRVNRACVDFEIGKLTEEQFKCLIYVCGLRDEEDVEIRTRLLGKIDDRNDT
FT                 TLESLTADCQRILNLKKDSAMIEKAATEQVFAVQKKTDEPKFSERQNFQSR
FT                 KHEYKRPQTLPGRNCWLCGKNHWARDCPFKSNVCRVCKKKGHRDGYCPKPK
FT                 RYSDSPTYRNKFSSRVVSVNTTNVQQRRKYINIFINNVSTRLQFDTGSDIT
FT                 IINRNVWQRLGKPELKRTVSARTASGSGLFLLGEFEANVTIGSVTHVATLR
FT                 VAQADILLLGTDLIDLFALGSTPMDAFCRHISSEDYSKTVERRFQEVFNGM
FT                 GLCTKASVKLQLKENVRPVFCPKRPVAYAVQELVDKELDRLEQMSIISPTD
FT                 YSEWAAPIVVVRKANGSIRLCGDYSTGLNDALQQHEYPLPLPEDIFARLSQ
FT                 CKIFSKIDLSDAFLQVEIDPAYRSLLTINTHRGLFTYNRLPPGIKIAPAAF
FT                 QQLIDTMLAGVKGVSCYMDDIIVGGATEQEHEANLMAVLKRIQEYGFSIRS
FT                 EKCAFKVQQLRYLGYIIDTHGLRPDPAKIDVIKRLPEPTDVSGVRSFLGAI
FT                 NYYARFVPNMRELRYPLDNLLKTNAQFRWTADCKRAFERFKSLLSSNLLLT
FT                 HYDPRHKIIVSADASSIGIGATISHMFPNGTIRVVQHASRALTKTEEGYSQ
FT                 IDREGLAIIFAVTKFHKMIFGRRFQLQTDHRPLLRIFGSKKGIPVYTANRL
FT                 QRFALTLLSYDFGIEYVRTESFGNADVLSRLINKHDKPDEDCVIASVALEM
FT                 DVKSIATSALVTFPLSFREVARETNRDPIARKLHYYIKNGWPRNIALGADS
FT                 SRYHSRKEDYSTVGRMYFCRRESVNTRETTQAMSVPASSRTSWYPAHEGDC
FT                 A"
XX
SQ   Sequence 4628 BP; 1362 A; 1022 C; 1086 G; 1158 T; 0 other;
     gtggcgacga ggaaaacaaa atagactttt gggagttttt tcgagtaaag tttacgtgtt        60
     atgcgtgtgt cagtcattgc tataactctc gtgctagcgt cgcgcgtgtg tatgtgcgtc       120
     gcgtgatcgt accgcgtctc gggtcgtatt taatttgttt tatcgggtgt tctgtgcgta       180
     ctgcaacaat tccttcgtta cggaagcgga gaagaatgaa cagcccagga gatcagcccc       240
     catcggaaga gcagcgtcga gcatcgcaaa attggtacag cgttcccggt gcagcaagta       300
     tgccgcagca gccgcagcag ccatcattag tagcagtgcc accaaatcta caaagtgcaa       360
     tgccctcagc ataccagaat ccagcgccat cgcagaattt tgttgaaggg tcatcgcacc       420
     aagcagcgtc atcgcaccaa gcaacgtcat cgcaccaagc agcgtcatcg gagcaaatga       480
     tgcaactgat cattttaatg cagaaacaga taagccaact cacattaatg caaaataatt       540
     cggcaactgc caagccccca gaaaatgtat taacttccgc accttttgca gagcaagtac       600
     tcgattcttt atcgcaccac ataaaggagt tccactacga ggaggaagca aaaatgacct       660
     ttgcttcgtg gtttgctcga tatgaggatt tgtttgaacg agatgcttca aggctggatg       720
     atagcgcaaa agtgcggctc ctcataagaa aactgggcgc agcagaatat gaaagatatg       780
     ccaatttcat attgccaaag agttgtcgtg atttttcgtt cagcgaaacg ataaaaaagc       840
     tgtcatcgtt attcggagtg aaagagtcat tgttgcatag gcgttataaa tgcttgaacc       900
     taatgaaacg acgtagcgaa gattatctgg catattcttg tcgtgtgaat cgagcctgtg       960
     tagattttga aattggaaaa ttaactgaag aacagttcaa gtgtctgata tacgtatgcg      1020
     gactgcggga cgaagaagac gtcgagattc gaacacgtct acttggaaag atcgacgacc      1080
     gaaacgacac aacactggaa agtttaacag cagactgcca gcgtattttg aacttaaaaa      1140
     aagacagtgc tatgatcgag aaagcagcaa ccgagcaagt tttcgctgtg caaaagaaaa      1200
     ctgacgaacc aaagttttct gagcgccaaa atttccagag cagaaagcac gaatataagc      1260
     gtcctcaaac cctacctgga agaaattgct ggctttgtgg aaaaaatcat tgggcgcgtg      1320
     attgtccttt taagtcgaat gtgtgtcgtg tctgtaagaa aaagggtcat agagacggtt      1380
     actgtccaaa accgaaacgt tattcagata gcccaacata cagaaacaag ttttcatcac      1440
     gagtggtttc ggtgaataca actaatgttc agcaaaggcg aaaatatatc aatattttta      1500
     taaataatgt aagcactcga ttgcagttcg acacaggatc tgatataacg atcattaatc      1560
     gaaacgtatg gcaacgtctt ggaaagcctg aactaaaacg aacagttagc gcaagaacag      1620
     catcaggaag cggactcttt ctgttaggag agtttgaagc gaatgttacc atcggaagcg      1680
     taactcatgt ggctacttta agagtagcac aggcagacat actattgctc ggaacagact      1740
     taatagacct gttcgcactt ggttctaccc ccatggatgc tttttgtagg catatttcat      1800
     ctgaggatta ctctaagacg gttgagcgga gatttcaaga ggtcttcaac ggcatgggtc      1860
     tgtgcacaaa ggctagtgta aaactgcagc tgaaggaaaa cgttcgtcca gtattttgcc      1920
     caaagcgacc ggtagcttat gcagtacagg agttagtcga caaggaactc gatcgactag      1980
     agcagatgag cataatatct ccaacggatt actctgaatg ggcagcacct atcgtcgtcg      2040
     tccgcaaggc aaacggcagc attcggcttt gcggggacta ctcaactgga ctaaacgacg      2100
     cgttgcagca acatgagtat cctttaccat tacctgaaga tatcttcgct agactatcgc      2160
     aatgcaaaat atttagcaaa attgatctat ccgatgcttt cttacaggta gaaatcgacc      2220
     ctgcctaccg atctttactc accatcaata cgcatcgagg tttattcacc tacaatagat      2280
     tgccgcctgg tattaagatt gctccagcag cgttccagca gcttatcgac acaatgctgg      2340
     ctggtgtaaa aggagtgtca tgttacatgg acgacatcat tgtcggagga gccactgaac      2400
     aagagcatga agcgaattta atggcagttt tgaaaagaat tcaagagtat ggattcagca      2460
     ttcgatcgga aaaatgcgct tttaaggttc agcaactaag atatttgggt tacatcatcg      2520
     acacccacgg attgcgcccc gatccagcga agatcgatgt cataaaaagg cttcctgaac      2580
     caacagatgt gagcggcgtc cgatcctttc taggagccat aaattattat gccagatttg      2640
     tcccaaacat gagagagttg cgatatccac tggataactt attgaaaaca aatgcacagt      2700
     ttcgatggac cgccgattgt aaaagagcgt ttgaaagatt taaatccctg ctatcatcga      2760
     acttgttgtt aacgcattat gatccaaggc ataaaataat agtatcggca gatgcatcat      2820
     caataggtat tggtgccact attagccaca tgtttcccaa tggtaccata cgtgtggttc      2880
     aacatgcctc tagagcactt acaaaaacag aagaaggata tagtcaaata gatcgtgaag      2940
     gactggcaat catcttcgcg gtaacgaaat tccacaagat gatatttgga aggcgtttcc      3000
     agcttcagac agatcatcgt ccactactgc ggatctttgg gtcgaaaaaa gggatcccag      3060
     tctacactgc caaccgcttg cagcgttttg cgctcacgct attgtcatac gatttcggca      3120
     ttgaatatgt acgcaccgaa tcattcggaa atgccgatgt actctccagg ctaattaaca      3180
     agcatgataa accggatgag gattgtgtaa tcgcttctgt tgcactagag atggatgtaa      3240
     agtctattgc aacaagcgct ttagttacgt ttcccttgag ttttagagag gtcgctcgag      3300
     aaacgaatcg tgatcctata gcaaggaagt tgcattacta cataaaaaac gggtggccac      3360
     gtaacattgc ccttggcgca gattcatctc gttatcacag caggaaggaa gactattcaa      3420
     cggtgggaag gatgtatttt tgtcggagag agagtgttaa taccagagaa actacgcaag      3480
     caatgtctgt cccagcttca tcgaggacat cctggtatcc agcgcatgaa ggcgattgcg      3540
     cgtagctatg tgttttggcc gtcgttaaat gaagacatca ttgatctcgt cagtaattgc      3600
     cattcatgtg ctctggcagc aaaatctcct gctcatgctg atcctttgcc gtggccgaag      3660
     acaacaacgc catgggagcg tgtccatgtg gactacgcgg gcccaataga tggagactat      3720
     tttttggtag tagtcgatgc gcatactaag tggccagaga tcatccggac ggctagtatc      3780
     acagcccgta taaccgttag catcttgaga gggttgttcg cgcgtttcgg tatgccaacg      3840
     acactggtga gcgacaatgg cacacaattc accagcggtg agttttcaga gttctgtttg      3900
     agtaatggtg tgcatcacat tacgtctgcc ccgtttcatc cgcaatcgaa cgggcaggca      3960
     gaaagattcg tagatacgtt taagcgctcg ttaaccaaga taagagtagg aggagcaccg      4020
     ctgcaggaag cactggacct attcctacag acatatcgaa ccacgccaaa ccctcagtta      4080
     gagcaaaaca aaacacctgc tgaagttatg tttggacgac ctatacgaac gtgttttgat      4140
     ttactccgtc ccccaaggaa aattcaacat gactttagag aagggaatga aagatcgttc      4200
     gagcgtgatg accttgtcta tgctaaggcg tatagtagga acaattggca ttgggttcca      4260
     ggaagagtga ttcggaaacg tggaaatgtt acctacgagg tactgactgg tcatcgcagc      4320
     gtcattagac acattaatca actgaaaagg cgtggaccat tcagcagccc gggtcccatg      4380
     acggaacgtt tcaatccatt accgttggat gtattattgg attcctggag catacccgtt      4440
     acaccatcag tgctcccaga tgtgtatcca acacaacttg caccgccagt ggcgactcca      4500
     actgagccgc catctcttcc cccacatcga tccattcctc agcatcaacg ttcaccacgt      4560
     cgctcttctc ggtctagaag agctccacgt cggttcgatc cgtacttacg ctattaaaaa      4620
     gggggaga                                                               4628
//
ID   GYPSY60-LTR_AG repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY60-LTR_AG is an LTR of retrotransposon GYPSY60_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY60_AG; GYPSY60-I_AG; GYPSY60-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-220
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY60_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 160-160 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY60-LTR is a long terminal repeat of GYPSY60_AG (its
CC   internal portion is deposited as GYPSY60-I_AG).
XX
SQ   Sequence 220 BP; 58 A; 44 C; 62 G; 56 T; 0 other;
     tgttgtggtc acgaagtgga aggctccctt tattcggcgt taagaacgta tgcagccact        60
     gagtgactga tgagcggtta gcagacgaga gagcgccaga cgctcgtggg acaccgtcgg       120
     gaacacaagg gctgatcgtg taataaagta ttgtgtattg tttattacgt gttcggtgta       180
     aatataaact gtgtatactc tcggccatcc gaacacaaca                             220
//
ID   GYPSY61-I_AG repbase;    DNA;    INV; 4551 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY61-I_AG is an internal portion of retrotransposon GYPSY61_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY61-I_AG; GYPSY61-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY61_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4551
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY61_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 161-161 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY61_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, is phylogenetically grouped with
CC   representatives of the mag lineage of other organisms.
CC   GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG,
CC   GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG,
CC   GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG,
CC   GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other
CC   members of this same lineage in Anopheles gambiae. The
CC   GYPSY61-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies. The consensus encodes the 1490-aa
CC   GYPSY61_AGP gag-pol like polyprotein (pos. 68-4537). The
CC   sequence of the LTRs flanking GYPSY61-I is deposited as
CC   GYPSY61-LTR_AG.
CC   GYPSY61_AGP:
CC   MLNSDDPNSDQQPSRSSHESHRQSSVPDPSTAWIHEMFKQQQSILHQQQEAFMKQQESFLTRMM
CC   SSMNVREPNGPEFLVESLAKQVTEFRYDPEENVTFAAWYRRFEGLFEKDAAKLPDDTKVRLLLR
CC   KLGVAEHERYNSYILPQKASDFCFEETVVKLRALFGSKESCVSKRYKCYQMQKTSSEDYVTFSC
CC   RINKATEEAELAGLSIETQKCLIFVCGLKDEQDADVRMKLLSRMEEKKDITLAQLAELCEKLTN
CC   LKRDTTLLAGESKVQMIGQEKCRSTKGKWQGSRKLHQRPEKQSRVQCFLCGEGHWARKCTFKHH
CC   KCSKCFKFGHKEGFCNAASRWTNRMRQNRNVRSVTVNTVRSGRGCVRVVINGTPLEMMLDTGAD
CC   ITIISRRLWHHVGKPVLKPSMVKARTASGDLLHILGEFAGSMIVAEQCMSCVIRVTTADLALFG
CC   KDAMDIFNLWDVPLTSVCNRVGLDEPCSEILQKEFPKLFSGKLGCCTKAKIQLELKEGATPVFR
CC   PKRPVAYAMFQAVDKELERLENDGIISKVDYSEWATPIVVVRKSNGTIRVCGDYSTGLNDMLQP
CC   HQYPLPLPQDIFASLATCTIFSQIDLSDAFLQVEVEELCRKLLTVNTHRGLYAYNRLPPGVKTA
CC   PGAFQQLMEVMLAGLGGVAVYLDDIVVGGPNEEAHMKNLRAVLKRIEEYGFTIRLDKCSFQKKQ
CC   IKYLGHLLDSKGLRPDPARIEAILNLQVPTDVTGVRSFLGAVNYYGKFVRNISMLRHPLDSLLK
CC   EGASFTWTKQCQDAFDQFKAILSSDLLLTHYDPRQEIIVAADASSFALGATISHRFKDGSIKVV
CC   QHASRTLTKTEQKYSQPDREGLAIIFAVTKFHRLVYGRHFRLQTDHKPLLRIFGSKTGIPVYTA
CC   NRLQRYALTLLLYDFQLEYVPTDKFGNADVLSRLIAKHEKPEDDYVIASIEIEEDLRSVVNSVS
CC   KALPLKFSDVERETKNDAQLRKVYEFTRNGWPHAAVRDRTLSNFHSRRESLSTFGDGLLFGERL
CC   IIPSSQRYKCLQQLHLGHPGIERMKALARSYVYWPGLDSEIESLVKSCRQCAMAAKSPVSSLPI
CC   CWMKANAPWQRVHVDYAGPIEGDYFLLAIDSFSKWPEIIPTKTISSTATIRILRNIFARFGMPT
CC   VLVSDNGTQFTSADFAEFCNTNGVEHIRTAPFHPQSNGQAERFVDTFKRALKKIREGGSSVSEA
CC   LDTFLLTYRSTPSKLLEQKSPAELMFSRKIRTCLELLRPPQRLDPVSEGNPRKFKMNDLVYAKQ
CC   YRRNSWRWVPGMISGRIGRVMYEVTIEQNRKIRSHVNQLQKRVDRNNTSKVAAQLDNTSNTSLP
CC   LNVLLDAWNMVEEVHYPDAYQTTSQHVAETAKDCTSSSSSSCPTSSSSSSSSSSPSSSSSSSPS
CC   SSCPASPSSSSSPAPSSSSPAPSSSSPTSSSSSLQRSAKAFLSPTSPGFETADSGTPSPVQPLR
CC   RSSRVRRSPLWMAAYKRI.
XX
SQ   Sequence 4551 BP; 1310 A; 951 C; 1162 G; 1128 T; 0 other;
     gtggcgacga ggagaaaaaa aaacgcctga caacgtagac acacaaaagc acgttagaag        60
     atacacgatg ctgaactcag atgaccccaa cagtgaccaa cagccatcgc ggagcagcca       120
     tgaaagccac cggcaaagca gcgtccctga tccgagtacc gcttggatac atgaaatgtt       180
     caagcagcag cagagcatcc tacaccaaca gcaggaagca tttatgaagc agcaggaaag       240
     ttttttaacc cggatgatgt cgtcgatgaa cgtgcgtgag ccgaacgggc cggagttttt       300
     agtcgaatca ttggcgaaac aagtgacgga gtttcggtac gatcctgagg aaaatgttac       360
     ctttgctgcg tggtataggc ggttcgaggg gctttttgag aaggatgctg ctaaattgcc       420
     agatgatacc aaggtgcgat tgttgttgcg gaaacttgga gtggcagaac atgagcggta       480
     caacagttat atattgccgc agaaagcaag tgatttttgt ttcgaggaaa cagtagtgaa       540
     actgcgcgcg ctgtttggat caaaagaatc gtgcgtcagc aagcgatata agtgctatca       600
     aatgcaaaaa acgagctctg aggattacgt tacgttttcg tgccggataa ataaggctac       660
     cgaagaagcg gaactagccg ggctcagcat agagacacag aagtgtttga ttttcgtgtg       720
     tggcctgaaa gatgagcagg atgccgatgt gcgcatgaaa ttgctgagcc gtatggaaga       780
     aaagaaggat attactctgg cacaactagc ggagctgtgt gaaaaactaa cgaacctcaa       840
     aagagataca accttgcttg caggtgaaag taaagtccaa atgattggcc aagaaaagtg       900
     tcgaagcact aagggaaagt ggcaaggtag tcggaagcta caccaacgtc cggaaaagca       960
     gagtagagtg caatgttttt tatgcggcga aggccactgg gctagaaaat gcacatttaa      1020
     gcatcataaa tgcagcaagt gttttaagtt tggacataag gaaggatttt gcaatgcagc      1080
     gtctcggtgg acgaacagaa tgaggcaaaa tcgcaatgta agaagcgtga cggttaatac      1140
     ggtcaggagt ggacgtggat gcgtcagagt tgtcatcaat ggcacaccgt tggaaatgat      1200
     gcttgataca ggcgctgata taacgattat ttcgcgtaga ctgtggcatc atgttggaaa      1260
     acctgtattg aaaccttcaa tggttaaagc gagaactgca tctggtgatt tgttgcacat      1320
     cttaggcgaa tttgctggtt ccatgatcgt agcggaacaa tgcatgagtt gcgtgattcg      1380
     agtaactacg gcggatttgg cactttttgg gaaagatgcc atggatatat tcaacctttg      1440
     ggatgtgccg ctgacgtcag tttgtaatcg cgttggtttg gatgaaccgt gcagtgaaat      1500
     attacagaag gagttcccaa aacttttttc cggcaagcta ggttgctgca ctaaggcgaa      1560
     aattcagttg gagctgaaag aaggtgcaac gcctgttttt cgtccgaagc ggcctgtagc      1620
     ctatgcgatg tttcaagcgg tggacaagga gcttgaacgg ctggaaaacg atggaataat      1680
     ttccaaagtg gattattcag aatgggcgac gccaattgtt gttgtgcgta agtcaaacgg      1740
     aactatacga gtgtgcggag actactcgac gggcttgaac gacatgctgc aacctcacca      1800
     atacccgctt cctcttcctc aagacatatt tgcaagtctg gccacctgta cgatttttag      1860
     ccagatagac ctttcggatg ctttccttca agtagaggtc gaggaacttt gccggaaact      1920
     gctaactgtt aatacacata gaggtttgta cgcgtacaac agattacccc caggggtgaa      1980
     aacagcaccg ggtgcttttc agcagctgat ggaggttatg ctggcaggtc tgggtggcgt      2040
     tgctgtttat ttggacgaca ttgtggttgg tggaccaaat gaagaagccc atatgaaaaa      2100
     tcttcgagct gtgcttaaaa gaattgagga atatggcttc accatacgat tggataaatg      2160
     ttcgttccaa aagaagcaga taaagtactt gggccatttg ttagattcga agggacttcg      2220
     accagaccct gctaggattg aagctatcct caatttgcaa gttcctactg atgtaacagg      2280
     agtgagatcg ttccttggag cagtgaacta ttacggcaag tttgtaagaa acatcagtat      2340
     gctacgtcat ccgctggata gtcttcttaa ggaaggagcg agttttacgt ggacaaaaca      2400
     atgtcaagat gcttttgatc agttcaaggc aattctttca tcagacctgc tcctgactca      2460
     ctacgatccg cgtcaagaga taatagttgc ggcggatgcc tcttccttcg cattaggagc      2520
     gactattagt cataggttca aagacgggtc gatcaaggtt gtgcagcatg catcacggac      2580
     gttgaccaaa acagaacaaa agtatagtca accagatcga gagggtttag ctattatatt      2640
     cgctgtgacc aaatttcaca ggctggttta tggaaggcat tttcgactac aaacggatca      2700
     taagccgctg ctgcgaatat ttggatccaa aactggtatt ccagtgtata ctgccaaccg      2760
     gttacagcgt tatgcattaa cgctgcttct gtatgatttt caattggagt acgtgcctac      2820
     agacaagttt ggtaatgccg atgtgttgtc gagactaata gctaaacatg aaaaacctga      2880
     agatgactac gtgatcgcaa gcattgaaat agaagaagac ttacgatctg ttgtgaacag      2940
     tgtgagtaaa gccctaccgc tgaagttcag tgatgttgaa cgcgaaacga aaaatgatgc      3000
     tcaattgcgg aaggtgtatg aattcactag aaatggatgg ccacatgcag cagtgagaga      3060
     caggactttg agcaatttcc acagtaggcg tgagtcctta tctacatttg gtgatggtct      3120
     cctttttgga gaaaggttga taataccatc gtcgcagcga tacaaatgtt tgcagcagct      3180
     acacctaggc catccaggga tagaacggat gaaggccctg gctcgaagct atgtgtactg      3240
     gcctggcctt gattcggaga ttgagagcct tgttaaatcg tgtcgacagt gtgcaatggc      3300
     agccaaatca cctgtatcca gtttaccaat ctgttggatg aaagcgaatg cgccgtggca      3360
     gcgagtgcat gtggactatg ctggtcctat cgagggtgat tattttctgc tagcgatcga      3420
     ctctttttca aagtggccgg aaatcatccc tactaagaca atatcatcaa cagccaccat      3480
     tcgcattctt cgcaatatat ttgcacgttt cggtatgcca actgtcctcg tgagcgataa      3540
     tggaactcaa ttcacaagcg cagactttgc agagttctgt aacacaaatg gtgttgagca      3600
     tatccgtacg gcaccctttc atccgcagtc gaacggacag gcggaaaggt tcgtcgacac      3660
     cttcaaaagg gcgcttaaga agataagaga agggggaagt agcgtatcag aagcattaga      3720
     tacctttcta ttgacataca ggagtacgcc gagcaaactg ttggagcaga aatcgcctgc      3780
     tgaattgatg ttcagccgaa agataagaac ttgcttggaa ctgctacgtc caccacaaag      3840
     attagatcct gtatcagaag gtaatccgag aaaatttaag atgaacgacc tggtgtatgc      3900
     aaagcaatat cgtcggaata gctggagatg ggttccaggt atgatcagcg gacgcatcgg      3960
     tagagtgatg tatgaagtaa ctattgagca aaacaggaag atacgttcac acgttaacca      4020
     gttgcagaaa cgagttgata gaaataacac cagtaaggtc gcagcccagc tggataacac      4080
     ttcaaatacg tcgttgcctt tgaatgtgtt gttagatgca tggaacatgg ttgaggaagt      4140
     ccactatcca gacgcttatc aaactactag tcaacatgtg gcagaaactg caaaagattg      4200
     tacgtcttct tcatcgtcat cgtgcccaac gtcatcatca tcatcatcat catcatcgtc      4260
     cccatcttca tcgtcatcgt catcaccatc gtcatcgtgc ccagcttcac cgtcatcgtc      4320
     atcgtctcca gccccatcgt catcgtctcc agccccatcg tcatcgtccc caacttcatc      4380
     gtcatcatca ttgcagcggt ctgcaaaagc gttcttgtca ccgacctcgc cagggtttga      4440
     aacggctgac agtggcacgc cttcgcctgt acaacctcta cgtcgatctt cgcgggttcg      4500
     aagatcacct ctgtggatgg cagcgtacaa gcgaatctaa agaagggggg a               4551
//
ID   GYPSY61-LTR_AG repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY61-LTR_AG is an LTR of retrotransposon GYPSY61_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY61_AG; GYPSY61-I_AG; GYPSY61-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-242
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY61_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 162-162 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY61-LTR is a long terminal repeat of GYPSY61_AG (its
CC   internal portion is deposited as GYPSY61-I_AG).
XX
SQ   Sequence 242 BP; 65 A; 47 C; 54 G; 76 T; 0 other;
     tgttgggagc ctgtgtttac cacgaaatat gtgcctctca taggtgacag ttgctggtca        60
     ccttgatgac gtgtgcaccg ggatgctgga gagcgaacgg gagaaaggct ctctcctgta       120
     ccgaccgtcg acgagacagt atcgcttcct taccgtttta atatatcgtg ttgtttattt       180
     atattatact aatattttaa tgtgttactt ttagaaatat acgttaacca aagaacacaa       240
     aa                                                                      242
//
ID   GYPSY62-I_AG repbase;    DNA;    INV; 4382 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY62-I_AG is an internal portion of retrotransposon GYPSY62_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY62-I_AG; GYPSY62-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY62_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4382
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY62_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 163-163 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY62_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY62-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies. The consensus encodes the 1441-aa
CC   GYPSY62_AGP gag-pol like polyprotein (pos. 179-4560). The
CC   sequence of the LTRs flanking GYPSY62-I is deposited as
CC   GYPSY62-LTR_AG.
CC   GYPSY62_AGP:
CC   MAELQQAILLMTELLQKLAQPNNTEQTLESLATNISEFSFDPENGITFEKWYSRYTDLFESDAK
CC   NLDDSAKVRLLLRKLDTPSHVRYVNFILPKLPKDVDFAGTVKILSQMFGTHTSIFNKRYQCLQL
CC   VKSEAEDIISYAGKVNRSCEDFDFKNMNIDQFKCLVFVSGLKGHAYADTRPRLLSRIECETAEA
CC   PVNLQTLINEYQRLVNLKEDTSMIERQSSSKQAVHVVQEKGSFHHPHTSKPEGKLPRTPCWQCG
CC   QMHFVRNCPFSEHQCKQCNRIGHKEGYCGCYSKRQTVPGGGEKKTSNQSPSNQPSHQQTNQPAN
CC   RQNNPRKVNARGVYIVNHIANHSSNRKYVPTLINGVATRLQLDTASDITVISKQTWNNLGNPSI
CC   IKPTIQAINASGKPLHLMGEFQCDVSINGKTARGRCFVTTTANLNLLGIDWIDLFKLWSVPLDS
CC   VCNQVTTKSIDQQISEFRAKHANVFNDSLGHCRKLKVKLFLKPNAKPIFCPKRPVPFNTIPLVD
CC   AELTRLQSLGILEPVDFSEWAAPIVAVRKPNGRVRICADYSTGLNEALEPNHYPLPTPEEIFAQ
CC   LNGSTVFSIVDLSDAYLQLEVDDDSKKLLTINTHRGLFRFNRLAPGVKSAPGVFQRVVDGMIAD
CC   IPGVRSFIDDVIVFGKDISSHATSLNLLFQRLKEYGFHVKAEKCHFFQSQLGYLGHIVDKQGIR
CC   PDPEKVKAIAALPPPTNVPELRSYLGAVNFYGRFVRNIHELRHPMDQLLKKDVKWQWTSACQQA
CC   FDQFKRTLQSNLLLMHYDPKLPIIVAADASSTGIGAVIFHQFPDGSMKAVQHASRTLAPAERNY
CC   GQPEKEALALVYAVTKFHKYLLGRHFTLLTDHKPLLSIFGSKKGIPLHTANRLQRWALTMLNYD
CC   FEIQHVSTNEFGCADLLSRLIDQTIQPEEEYVIAALSLEEDLVSILADTTEKVPVSFAALQKAT
CC   TTDATLQSVAQHIRDGWPSCSKNLSAAVQPYFLRRESLSMIDGCVMFGNRVIVPAQFRRRILQQ
CC   FHRGHPGIVRMKAIARSFVYWPGIDNEIEDFVKRCNPCSTAGKTPTKTTLESWPVPTKPWSRIH
CC   IDYAGPVDGVYFLIIADPYSKWPEVYMTKTTTAKATIKLLKQSFATFGVPEVIVSDNGTQFSSH
CC   EFLTFCTSEGIRHIRIAPYHPQSNGLAERFVDTLKRSLRKIRSGGETLEEALVTFLQVYRSTPS
CC   SDLGGKSPAELMFNRPLRTVSALLRPTTSEDGHTVRRDRTLQNDAFNRKHGAVKRSFQHGESVY
CC   VKVHQANSWQWKPGTIIEKIGSVNYNIFLEDQQRLIRSHANQLKSRFTETSQHTDQSTPLSIFF
CC   DNFGLQFPVEVPSTEIYVDVDSQDEEAVAVSQSNSFLTEDISEDEHENSDGSMVEPVDNEQTPV
CC   PVELSEQATSTMDRPRRTIQLPARFKPYWMFKP.
XX
SQ   Sequence 4382 BP; 1246 A; 1136 C; 1001 G; 999 T; 0 other;
     atttggcgac gaggattttg aaattttgaa gcacaacgaa agaagcgatg gcagaactac        60
     agcaagcaat ccttttgatg acggaactcc tgcagaagct ggcacagccg aacaatacgg       120
     agcaaactct cgaatccttg gcaaccaaca tcagtgaatt ttcgttcgac ccggaaaatg       180
     gaatcacttt cgaaaagtgg tacagccggt atacggatct tttcgaatcg gatgccaaga       240
     atttagacga ttccgccaag gtacgcctgc tgttgaggaa gttggacaca ccatcccacg       300
     tcaggtacgt caacttcatc ttgccgaagc ttcccaaaga cgtcgatttt gctggcaccg       360
     tcaagatact atcgcaaatg ttcggcacac acacctccat ttttaacaag cggtaccagt       420
     gcctccagct agtaaaatct gaagcagagg acatcattag ctacgcaggg aaggtgaatc       480
     gttcatgcga agatttcgac ttcaaaaata tgaacatcga tcagttcaag tgtttggtgt       540
     ttgtgagtgg ccttaagggt catgcctacg ccgacacgcg accaaggctt ctttcccgga       600
     ttgaatgtga aacagcagaa gctcccgtga atcttcagac cttgattaac gaatatcaac       660
     gactcgttaa tctcaaggag gacacatcga tgattgagcg ccagtcaagc tcgaaacaag       720
     cggttcacgt tgtccaggag aagggaagtt ttcatcatcc acacacttca aaaccggaag       780
     gtaagctgcc tcgcacccct tgttggcaat gcggacaaat gcattttgtc cggaactgtc       840
     cgttttcgga gcaccagtgc aaacagtgca accgaattgg ccacaaggaa ggctattgcg       900
     gctgttattc caaacggcag acagttccag gcggagggga aaagaaaaca tcgaatcagt       960
     caccatcgaa tcagccatct catcagcaaa cgaatcagcc agcaaataga caaaacaacc      1020
     ctcggaaagt caacgctaga ggagtataca tcgtgaacca catcgctaac cattccagca      1080
     accgaaagta cgtgcctact ttgatcaacg gcgtggctac caggctccaa ctggacacag      1140
     caagcgatat cacggtgata tcaaagcaaa catggaacaa cttgggtaac ccttcaatca      1200
     tcaaaccgac gatccaagca atcaacgcgt cgggcaaacc acttcatctg atgggtgagt      1260
     tccagtgcga cgtcagcatc aacggaaaaa ctgctagagg cagatgtttc gtcacgacga      1320
     ctgccaacct caaccttctc ggcatcgact ggattgacct gttcaagctg tggtcagttc      1380
     ctctcgactc cgtttgcaat caagtaacga cgaagtcgat cgatcagcag attagtgaat      1440
     ttcgagcaaa gcatgcaaat gttttcaatg attcactggg acactgcagg aaattgaagg      1500
     taaagctttt tctcaaacca aatgctaaac ctattttctg tccaaagcgc ccagttcctt      1560
     tcaacaccat tccattggtc gatgctgaac tcacacggtt acaatcattg ggcatcctcg      1620
     aacctgtcga tttctccgaa tgggctgctc ccatcgtggc agtgcgcaaa cctaacggtc      1680
     gagtgcgcat atgtgcagac tactctacgg ggctaaacga ggcgttggaa ccaaatcact      1740
     atccgcttcc gacgccggag gaaattttcg cccaactcaa cggcagcacc gttttcagca      1800
     tcgtcgatct ttctgatgcg tatctgcagc ttgaggtgga tgacgactcc aagaagctgc      1860
     tcacaatcaa cacgcatcga ggattgttcc ggttcaatcg cctggctccc ggagtgaaat      1920
     ctgcgccggg cgtattccaa cgtgtggtgg atggaatgat agcagacata cctggtgtcc      1980
     gctctttcat cgatgatgtc atcgtgtttg gaaaggacat cagctcacac gcaacgtcac      2040
     tcaacctact cttccagcgg ctcaaagagt atggttttca cgtgaaggct gagaagtgtc      2100
     atttctttca atcacaactc ggctatttgg ggcacattgt ggacaaacaa ggcattcgtc      2160
     cagaccccga gaaagtgaag gctatcgctg cactcccacc gccaaccaac gttcccgagc      2220
     ttcgatcgta cctgggtgca gtcaacttct acggtaggtt cgtgcgcaac attcacgaat      2280
     tgcggcatcc aatggaccag ctgttgaaga aggacgtgaa atggcagtgg acatcggcat      2340
     gccaacaggc tttcgaccag ttcaaaagga cgcttcaatc aaacctgctg ctaatgcatt      2400
     acgaccctaa gcttccaatc atcgtggctg cggatgcatc aagcacaggc atcggggcag      2460
     tcatctttca ccagttccct gatggcagca tgaaggcagt acaacacgct tcgaggacgc      2520
     tcgcacctgc ggagcgtaat tatggacaac cagagaagga agcgcttgcg ttggtctatg      2580
     cagtgaccaa attccacaag tatctgttgg gacgccattt cacactgctg actgaccaca      2640
     agccactact ttccatcttc ggttctaaga aggggattcc cctacacact gcgaaccgac      2700
     tacaacggtg ggctctcacg atgctgaatt acgacttcga gattcagcat gtatccacca      2760
     acgaattcgg atgtgcagat ctgttgtccc gactgatcga ccagaccatc caacccgaag      2820
     aagaatatgt tatcgctgcg ctgagccttg aggaagattt ggtaagcatt cttgctgaca      2880
     caacagaaaa ggttcctgtt tcattcgcag cattgcaaaa ggctacaaca accgacgcca      2940
     cactccaatc tgttgctcaa cacatacgcg acggatggcc cagctgctcc aagaaccttt      3000
     ccgctgcagt tcaaccgtat tttctacgac gggaatcgct cagcatgatt gacggatgtg      3060
     tcatgttcgg caacagagtc atcgttccgg cccagtttcg acgaaggatc ctgcaacagt      3120
     ttcatcgagg tcatccggga attgttcgga tgaaggcaat tgcacgaagc tttgtgtact      3180
     ggcctggcat cgataacgaa attgaggatt tcgtaaaacg ctgcaatccg tgttcgactg      3240
     ctggcaagac tcccaccaag accacgttgg aatcttggcc agtacctacc aaaccatggt      3300
     cgaggatcca tatcgactac gcaggtccgg tagatggagt ttacttcctg atcatagcgg      3360
     atccctactc caagtggcct gaggtataca tgaccaaaac aacaacagcg aaagccacga      3420
     tcaaattgct gaagcaatca ttcgcaacat tcggagttcc ggaagtaatc gtttcggaca      3480
     acggcaccca gttttcaagc cacgaattcc tgacgttctg cactagtgaa ggtattcgac      3540
     acattcgaat tgctccatac catccacaat ctaacggtct tgctgaaaga tttgtggaca      3600
     cgttgaaaag aagccttcga aaaattcgtt cggggggaga gacgctcgaa gaagctctag      3660
     tcactttctt acaagtgtac cgctccactc cttccagtga tctgggtgga aaatccccgg      3720
     ctgaattgat gttcaacaga cctcttcgta ctgtttccgc attgctacgg ccaaccacaa      3780
     gtgaagatgg tcacacagtg cgaagagata gaacattgca gaacgatgcg ttcaaccgca      3840
     agcacggggc tgtcaagaga agttttcagc acggagaatc ggtttacgta aaggttcatc      3900
     aagcaaattc ttggcaatgg aaacctggca ccataattga aaagatcggt tctgtcaact      3960
     acaacatttt ccttgaggat caacaacgac tgataagatc gcatgccaac cagctcaagt      4020
     cgcgcttcac cgaaaccagc caacataccg atcagtctac tccactatct atctttttcg      4080
     acaatttcgg cctacaattt cctgttgaag taccatcaac cgaaatttat gtagatgttg      4140
     attcacagga tgaagaagca gtagccgtca gccagagcaa ctccttctta acagaagata      4200
     tttcagaaga tgaacacgaa aacagcgacg gttcaatggt cgaaccagta gacaacgaac      4260
     aaactcctgt accagtagaa ctaagcgaac aggcaacatc cacaatggac agaccgcgac      4320
     gaacaatcca acttcctgct cgtttcaagc cctattggat gttcaaacct taagggggga      4380
     aa                                                                     4382
//
ID   GYPSY62-LTR_AG repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY62-LTR_AG is an LTR of retrotransposon GYPSY62_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY62_AG; GYPSY62-I_AG; GYPSY62-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-178
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY62_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 164-164 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY62-LTR is a long terminal repeat of GYPSY62_AG (its
CC   internal portion is deposited as GYPSY62-I_AG).
XX
SQ   Sequence 178 BP; 60 A; 37 C; 35 G; 46 T; 0 other;
     tgttggatcc cagttaccac agggataatg gaacacatag caacacttag aaagcatagc        60
     aaccatgcgg tataaaagga gccgatagct catcaccgct ttactctgaa gttgattttc       120
     aaatacaaaa ctttaacttg aacctgtgtg taatagtccg agtagttcgg acatatca         178
//
ID   GYPSY63-I_AG repbase;    DNA;    INV; 4342 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY63-I_AG is an internal portion of retrotransposon GYPSY63_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY63-I_AG; GYPSY63-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY63_AG; mag lineage; reverse transcriptase.
XX
NM   GYPSY63-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4342
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY63_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 165-165 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY63_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY63-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1432-aa
CC   GYPSY63_AGP gag-pol like polyprotein (pos. 35-4330). The
CC   sequence of the LTRs flanking GYPSY63-I is deposited as
CC   GYPSY63-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..4330
FT                 /product="GYPSY63_AGp"
FT                 /note="gag-pol like polyprotein"
FT                 /translation="MSLENQNIQLEILKALQKLSETSTGTNNTERFVAMNM
FT                 TEFTFDPENGGTFQKWFRRYEDLFESDAKELEDVAKVRLLLRKLDAQAHNQ
FT                 YTNYILPKLPKELTFKETVQTLSKIFGSQSSLFSRRYRCLQLVKTEADDII
FT                 SYAAKVNRACEDSEFHNMKADHFKCLVFICGLKGQTYADIRARLLSRIDAE
FT                 TADAPITLQNLVDDFQKLVNLKADTSIVEQQPNSSTTVNALHEKTEHHHHE
FT                 QYRQRYQESKTSEQPRRPCWRCGQMHFVRDCQYSTHQCRKCNRVGHKEGYC
FT                 GCFSKFKPAGEEKTNTKPSTSDQGKLNARGVYIVNHITQHSSKRKFVPATI
FT                 NGVTINLQLDTASDITVISQQTWQKLGSPNIQPVTIQAINASGKPLHLSGE
FT                 FQCTININGQTQQGRCFVTTAVNLNLLGIEWIELFELWSIPIDTICNQLTT
FT                 ESIDQQMREIQAKHADVFKDTLGHCKKTKVKLYLKSNAKPVFCQKRPVPFN
FT                 TIPLVDAELTRLQNLGIIETVDFSEWAAPIVAVRKPNGRVRICADYSTGLN
FT                 AALEANHYPLPTPEEIFSQLNGSTIFSIIDLSDAYLQLEVDDDSKHLLTIN
FT                 THRGLFRFNRLAPGVKSAPGAFQRLVDGMIADIPGVRSFIDDVIVFGKDMK
FT                 SHKDSLNTLFARLKEYGFHVKAEKCHFCKTQLVYLGHVVDKHGIRPDSEKI
FT                 KTIASIPPPSNVSELRSYLGAVNFYGRFVRNLHELRYPMDQLLKKESKWKW
FT                 TPECQEAFVKFKEALQSHLLLTHYDPKLPIIVAADASNTGIGAVIFHQFTD
FT                 GKMKAIQHASRTLTPAEQNYGQPEKEALALVYAVCKFHKYLLGRHFTLLTD
FT                 HKPLLSIFGSKKGIPLHTANRLQRWALTMLNYDFEIQYVSTQDFGCADLLS
FT                 RLIDRNKQPEEEYVIATLTLEDDLSSILSDTSQKVPISFQALRKATASSST
FT                 LQAVCKFIREGWPNCSTNLPTAIQPYYARRESLSIVQGCVMFGDRVVVPNI
FT                 FQKKILQQFHRGHPGIVRMKSIARSYVYWPGIDKEIEDFVKCCSPCAITAK
FT                 TPTKTTLEFWPIPSKPWSRVHIDYAGPVDGFYFLVIVDPHSKWPEVYATRS
FT                 ITARTTIRILKQIFATFGVPEVLVSDNGTQFTSYEFKEFCVSQGINHLRIA
FT                 PYHPQSNGLAERFVDTLKRSIQKIRKGGESLEDALTTFLQVYRTTPSGDLD
FT                 GKAPADIMFSRPLRTISSLLKPSEHGNVEPRNRMKEAEFFNKKHGAVKRCY
FT                 QQGDAVYVKIYRRNSWQWEAATVIDKIGNVNYNVFLKEKQQLVRSHTNQLK
FT                 SRLANGQNMAEFSTPLSVLLDDFGLKTPLPSDQQSTSSQFVSCDEPVTTSS
FT                 DTELASQTLCSTPDHSELGNISSENDNAEESEGEEPVVQQQEQQSSILERS
FT                 RRVIKLPERFKSYWMPNP"
XX
SQ   Sequence 4342 BP; 1395 A; 968 C; 894 G; 1085 T; 0 other;
     attggcgacg aggatagttg aactaaaagc aagaatgtct ctcgaaaatc agaacattca        60
     attagagatt ttgaaggctc tgcagaagct atcagaaaca tcaacgggta caaataatac       120
     ggaacgattc gtggcaatga acatgaccga gtttactttc gatccagaga acggaggaac       180
     ttttcaaaaa tggtttcgac gttatgaaga tttgttcgag tcggatgcca aagaactcga       240
     agatgtcgct aaggtcaggc ttttactgag gaagttggat gcacaagcac acaaccagta       300
     caccaattac atcctcccga aacttccgaa ggagctaact ttcaaggaaa ctgtgcaaac       360
     attatcgaaa attttcgggt cgcagagttc actttttagc agacgttacc gttgtcttca       420
     gctcgtcaaa accgaagcag atgacattat tagttacgcg gcgaaagtga accgggcttg       480
     tgaagattca gaattccaca acatgaaggc tgaccatttc aagtgtttag tatttatttg       540
     tggattgaaa ggtcaaacct acgcagacat acgagccaga ctactctctc gcattgatgc       600
     cgaaactgca gatgcgccca ttacactgca aaatttggtt gacgatttcc aaaaactcgt       660
     caatttgaaa gcagatactt ccatagttga gcaacagcca aactcatcta caacggtaaa       720
     cgctctacat gagaagacag aacatcacca tcacgaacag tatcgacagc ggtatcaaga       780
     atcaaaaaca tcagagcaac ctcgcagacc atgctggcgt tgcggtcaaa tgcactttgt       840
     tcgagattgc caatactcga cacaccagtg tagaaaatgc aatcgtgttg gtcacaaaga       900
     aggctactgt ggatgttttt caaaattcaa acctgccggg gaggagaaga ctaacacgaa       960
     accatcaaca agtgatcaag gaaaactgaa tgccagaggt gtctatattg tcaatcacat      1020
     cactcaacac tccagcaaaa gaaaatttgt tcctgcaacc atcaacggcg ttacaatcaa      1080
     tctgcagctc gacacagcaa gtgatattac ggtgatttca caacaaacat ggcaaaagtt      1140
     gggctcaccg aacatccaac cagtgacgat tcaggccatc aatgcatctg gtaagccact      1200
     ccatttatcg ggcgaattcc agtgcaccat caacatcaac ggccagaccc aacaaggcag      1260
     gtgtttcgtc actacagcag ttaacctaaa cttgctaggg atagaatgga ttgaactatt      1320
     cgagctttgg tccattccaa ttgatacgat ttgtaatcaa ctaacaacag aatcgatcga      1380
     ccagcagatg cgagaaattc aagcgaagca tgcggatgtt tttaaggata cattggggca      1440
     ttgcaagaaa actaaggtta agctttacct caaatcaaac gcaaagcctg ttttctgcca      1500
     aaagcgtcct gtacctttta acacaatacc tttggttgat gccgaactta ctcgattgca      1560
     aaacttgggc ataattgaaa ctgtcgattt ctccgagtgg gcagctccaa ttgtggcggt      1620
     gaggaaaccg aatggacgtg ttcgaatatg tgccgattat tcaacaggat tgaatgctgc      1680
     gttggaggca aaccattatc cattgccaac accagaagaa attttctcgc aacttaacgg      1740
     cagcaccatc tttagcatca tagacctgtc cgatgcctat cttcagctcg aagttgacga      1800
     cgattcaaag catttactaa ccatcaatac acatcgtgga ttattccgat tcaaccgtct      1860
     cgcaccaggg gtaaaatcag caccaggagc attccaacgc ctcgtagatg gaatgatagc      1920
     tgatattcct ggggtgcgat cattcattga tgatgttatt gttttcggca aggatatgaa      1980
     atcacacaag gattcactca acaccttgtt cgcacgtctt aaggagtacg gatttcacgt      2040
     aaaagccgaa aaatgccatt tttgcaagac tcaacttgtg tacttgggac acgttgtaga      2100
     taagcatggt attcgtccag attccgaaaa gatcaagaca attgcttcga ttccaccacc      2160
     aagcaatgtg tccgagctac gatcttatct tggagcagtg aatttttacg gaagattcgt      2220
     tcgtaacctg cacgaattac gttaccctat ggatcagctg cttaagaagg aatcgaaatg      2280
     gaaatggacg ccagagtgtc aggaagcttt cgtcaagttt aaggaagcac ttcagtcaca      2340
     tttgctccta acgcactacg atccaaaact tccgatcatc gttgctgcgg acgcatcaaa      2400
     cacaggaatt ggtgcagtca tttttcatca atttactgat ggaaaaatga aagcaattca      2460
     acacgcgtca cgaacactta cacccgctga acagaactat ggacaaccag aaaaagaagc      2520
     tctcgcatta gtttacgcag tatgcaagtt tcacaaatac ttgcttggac gtcatttcac      2580
     tttgctcacg gatcacaaac cattactttc aatttttggt tcaaaaaaag gtataccact      2640
     tcataccgct aaccgtttgc aaaggtgggc acttaccatg ttgaattacg atttcgaaat      2700
     tcaatacgtg tccacacaag atttcggatg cgcagatctt ttatcacgat tgattgaccg      2760
     aaacaagcag ccggaagaag agtacgtaat tgcaacactg actttagaag atgacctttc      2820
     gagcattctg tccgatacat cacagaaggt tccgatttca tttcaagcac tccgtaaagc      2880
     aaccgcttca agctcaacac tacaagcagt ctgcaaattc attcgtgaag gttggccgaa      2940
     ttgttccact aatcttccaa ctgcaatcca accttactac gcgaggcgcg aatcattatc      3000
     aatagtccaa ggatgcgtta tgtttggtga cagagttgtt gtaccaaata tatttcaaaa      3060
     aaagattcta caacaatttc atcgaggaca cccagggata gttcgaatga agtcaatcgc      3120
     tcgaagctat gtttactggc ctggtattga taaagaaatc gaggattttg ttaaatgttg      3180
     tagtccgtgt gcaattacag cgaaaacacc gacaaagaca actttggaat tttggcccat      3240
     accatcaaaa ccatggtcca gagtacacat tgactatgca ggcccagtag acggattcta      3300
     cttccttgta atcgtggatc cacactcgaa atggccggaa gtttacgcta ccagatcaat      3360
     aactgcgaga acaacaataa gaattttgaa acaaattttc gcaactttcg gagtgccaga      3420
     agttctcgtg tctgataacg gtactcaatt taccagttac gagtttaagg agttttgcgt      3480
     tagtcaaggc atcaaccact tgcgcattgc tccatatcat ccgcaatcca acgggttagc      3540
     tgaacgattt gtggatacac tgaaacgaag tattcaaaaa attcgcaagg gaggggaatc      3600
     tctcgaagat gcactaacca ctttccttca agtatatcga accacaccat ctggagattt      3660
     ggatggaaaa gctcctgctg acattatgtt ctctagacca ttacgaacta tatcgtcgct      3720
     cctcaaacca agcgagcacg gaaatgttga gccgaggaac agaatgaagg aagccgaatt      3780
     tttcaacaaa aagcacgggg cagtgaaacg atgttatcaa cagggcgatg ctgtttatgt      3840
     caagatatat cgtagaaact cctggcagtg ggaagcagca accgtaatcg acaaaatcgg      3900
     caacgttaat tataacgttt tccttaaaga aaaacagcag ttagtacgat cacacaccaa      3960
     ccagctgaaa tctcgattgg caaacgggca aaacatggca gaattttcaa caccactatc      4020
     tgtactgctt gatgattttg gtttgaaaac acctttaccg tcagaccaac aatcaacgtc      4080
     gtcacagttt gtttcctgtg atgaacctgt aacaacatca agcgatactg aactagcatc      4140
     tcagacactc tgttcaactc cagatcattc tgaattgggt aacattagtt ccgaaaatga      4200
     caacgcagaa gaatccgagg gagaagaacc agttgttcaa cagcaagagc agcaatcatc      4260
     aattttggaa agaagtcgaa gagttatcaa attaccagaa cggttcaaat cttactggat      4320
     gccgaatcca taagggggga ga                                               4342
//
ID   GYPSY63-LTR_AG repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY63-LTR_AG is an LTR of retrotransposon GYPSY63_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY63_AG; GYPSY63-I_AG; GYPSY63-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-144
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY63_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 166-166 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY63-LTR is a long terminal repeat of GYPSY63_AG (its
CC   internal portion is deposited as GYPSY63-I_AG).
XX
SQ   Sequence 144 BP; 54 A; 22 C; 23 G; 45 T; 0 other;
     tgttggatat cacagtacac atgtacaacc atatagaata gttattgtac gatcgtagta        60
     tacatttata accttataga atagtcagtt ggaataaagc tattaatctg aacacatcgt       120
     agtctggcaa ctaagtatat aaca                                              144
//
ID   GYPSY64-I_AG repbase;    DNA;    INV; 4359 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   27-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY64-I_AG is an internal portion of retrotransposon GYPSY64_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY64-I_AG; GYPSY64-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY64_AG; mag lineage; reverse transcriptase.
XX
NM   GYPSY64-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4359
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY64_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 167-167 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY64_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY64-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1424-aa
CC   GYPSY64_AGP gag-pol like polyprotein (pos. 74-4345). The
CC   sequence of the LTRs flanking GYPSY64-I is deposited as
CC   GYPSY64-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..4345
FT                 /product="GYPSY64_AGP"
FT                 /note="gag-pol"
FT                 /translation="MEGAQEKDSAAGGGESSKNVSEAILKILANQQSLMSS
FT                 MAQQLQLTNQSIQKFTHVEVVLDSLSSNMSEFVYDKENGYTFDAWYSRYSE
FT                 LFDRDACNLDNAGKVRLLLRKLSPQDHERYNSFILPKLAREFTFEQTVKKL
FT                 KSLFGATISTFRRRYNCLQMTKDDVDDYLSYSCKVNKSCVDFKLSELTEEQ
FT                 FKCLIYVCGLKSSSDAEIRMRLINKLNEAQDITLQQIVEQCNSLVNLKQDT
FT                 VLVEQPSSVQYVANKGSSQQQRHPSGGNKQQDHPRTPCWSCGAMHFHKDCP
FT                 SRNHKCKDCGKIGHSEGYCACFTSMATTSAPAQKAPWKKQYKRKQHQGQTS
FT                 KIVTVNHVTQRRKFVSVHLNNIPHRLQIDTGSDITIISHQAWKRIGSPAVK
FT                 PATCNARTASGDPLQLAAELECSITINNVTKQGKCFVTDPNVNLNVLGIDM
FT                 MDLFGLWNEPITAFCNQICTTKTTNIAELRSRYPDVFNDKMGLYNKTAVQL
FT                 TLKGTPTPVFRAKRPVAYMMEAVVEDELHRLESLGIIKKVDFSDWAAPIVV
FT                 VRKPNGTVRICADFSTGLNNVLESNNYPLPLPEDIFVKMANCVIFSHIDLS
FT                 DAYLQVPVDEASQPFLTINTHKGLFQFTRLSPGIKSAPGAFQKLMDTMLAG
FT                 LNSTTGYLDDILVGGRNEDEHQQNLHLVLNRLRDYGFTVRIEKCNFNMRQV
FT                 KYLGQILDAQGIRPDPDKIAPIVSMPPPHDIPTLRSYLGAINYYGKYVQEM
FT                 RTLRQPMDQLLKAGMKFHWSTACQRSFDRFREILQSPLLLTHYNPKMEIIV
FT                 SADASNVGLGARIAHKFPDGSIKAIYHVSRSLTSAESNYSQIEKEALALIF
FT                 AVTRFHRMIYGRRFILETDHKPLLAIFGAKKGIPTYTANRLQRWALTLLLY
FT                 DFSINYISTDSFGHADVLSRLINRHVRPDEEMVIANLTFEKSIRSILNESL
FT                 QAVPLSFKTIQNTTKNDDTLQQIIKFIKEGWPPKTIINDPKILQFYQRRDG
FT                 LSVVADCIMYGERLVVPPSSRESVLKQLHKGHPGIERMRSIARQYVYWPNV
FT                 DEDVAHIVKSCIECSSVAKTDRKTTLESWPVPEKAWQRLHLDYAGPVNGYY
FT                 YLILVDAYSKWPEVMRTKDITTTATLRMLRNIFARHGQPETLVTDNGTQFT
FT                 SNMFETFCEHYSIVHLKTAPFHPQSNGLAERFVDTFKRALKKITAGGETLE
FT                 EAIDTFLLCYRSTPCRSSPEGKSPAEHIYKRPIRTALELLRPPSSSHKVHD
FT                 NKQEKQFNLKHGAKKRHYSPQDLVWAKVYHNNKWSWAHGQVIEQIGSVLYN
FT                 VWLSSTRKLIRSHCNQLRSRHEAEVSQQEQLATTDVQIPLAILLDNCGLND
FT                 EVERETTTSTTLPSEMLADLAPPRQRSRVGSTRNNNQPPVPTRQSSRQRVP
FT                 PTRYDAYHLY"
XX
SQ   Sequence 4359 BP; 1371 A; 1013 C; 942 G; 1033 T; 0 other;
     gtggcgacga ggcggtagaa gtttgcaaaa aaaccagcga aaattttccc gggaccgtgt        60
     gttatcatcg acaatggaag gtgctcaaga aaaagattct gcagcaggcg gaggagagtc       120
     atcaaagaat gtgtcggaag cgatactgaa aattctcgcc aaccagcaga gcctcatgtc       180
     ttctatggca caacagcttc aattgacgaa tcaatccata caaaagttca cacatgtgga       240
     ggttgtactt gactcattat caagtaatat gtcagagttt gtctacgaca aagaaaacgg       300
     atacactttc gacgcctggt attcccgtta cagcgaactt ttcgatcggg atgcttgcaa       360
     ccttgacaac gcgggaaaag tgaggttact tttacgcaaa ctgagcccac aagatcacga       420
     gcggtacaat agtttcatat tgccaaaact agctcgcgaa ttcacattcg aacaaacagt       480
     gaaaaagcta aaatccctgt ttggcgctac catctctacg tttcgacgca gatacaattg       540
     tcttcaaatg acaaaagatg acgtagatga ttatctttca tattcctgta aagtgaacaa       600
     atcctgtgtt gattttaaac tttccgagtt aactgaggaa cagtttaaat gcttgatcta       660
     cgtatgtgga cttaagtcaa gcagcgatgc agagattcgt atgaggctga tcaacaaact       720
     gaacgaagca caggacatca cgctccaaca aatcgtcgaa cagtgcaaca gtctcgttaa       780
     cctcaaacag gacactgtgc ttgtagagca accatcgtca gtgcagtacg ttgctaacaa       840
     aggttcatca cagcaacaac gtcatcccag cggaggaaac aaacagcagg atcatcctcg       900
     tactccttgc tggtcttgcg gtgcaatgca cttccacaaa gattgtccga gtcgaaacca       960
     caaatgcaaa gattgtggta aaattggaca ttccgaggga tactgcgcct gtttcacatc      1020
     aatggcgacc accagtgctc cagcgcagaa ggcaccgtgg aagaagcagt acaagcggaa      1080
     gcaacatcag ggacagacat cgaaaatagt gacagtcaac catgtcacgc aaagaaggaa      1140
     gttcgtctcc gttcatctca acaacattcc tcatcgactg caaattgaca cgggatcgga      1200
     catcaccatc atctcacatc aggcatggaa gcgtatcggt tctccggcag tcaaaccagc      1260
     cacttgcaat gctaggacag cgtcgggcga tccgttgcaa ttagcggcgg agctggagtg      1320
     cagcatcacc atcaataacg ttacgaaaca gggtaagtgt tttgtaactg atccgaatgt      1380
     caatcttaac gttttaggga ttgatatgat ggaccttttt ggactgtgga acgagccaat      1440
     cacagcgttc tgcaaccaga tctgcaccac gaagacgaca aacatagcag aactacggtc      1500
     tcgttatcca gacgtcttca acgacaaaat ggggttgtac aacaagacag cagtacaact      1560
     tacgttgaag ggcacgccta caccagtatt tcgtgcaaag agacccgttg cgtacatgat      1620
     ggaagctgtt gttgaagatg agctgcatcg tctggaaagt cttggcatca tcaaaaaagt      1680
     ggacttttct gactgggcgg cacccatcgt cgtggtacga aaaccgaacg gcaccgttcg      1740
     tatttgtgcg gatttctcga cggggttgaa caacgtgctg gagtcgaata attatccttt      1800
     accactgcca gaggatatct tcgtgaaaat ggctaactgc gtcattttca gccatattga      1860
     tttgtcggac gcctacctac aagtacccgt agacgaagca agccaaccat tcctaaccat      1920
     caacacccac aagggactgt ttcaattcac acgattgtca cccggcatca aatcagcgcc      1980
     aggggcattt caaaagttga tggatacgat gctcgctggg ctcaatagca ccacagggta      2040
     cctggacgac atattagtag gtggacgaaa cgaagatgag catcagcaaa acttacatct      2100
     cgtgctaaac cgtttgcgag attacggatt taccgtacgc attgaaaaat gtaatttcaa      2160
     tatgcgccaa gtcaaatatc tgggacaaat ccttgatgca caaggaatcc ggccagatcc      2220
     agataaaata gcaccaattg tgagcatgcc accgccgcac gacattccaa cgctgcgatc      2280
     ataccttgga gccataaatt attatggcaa atatgtccaa gaaatgcgca cactccgtca      2340
     gcccatggat caacttttga aggcaggtat gaaatttcat tggtccacag catgccaaag      2400
     atcattcgat cgttttcgag aaattttaca atctccatta ctgctaacgc attacaatcc      2460
     aaaaatggag ataatagtat ctgcagacgc ttcaaacgta ggattgggtg ctcgcattgc      2520
     tcacaagttt cctgatggat caataaaagc catttaccat gtgtcgcgta gcttaacatc      2580
     agctgaaagt aactatagcc aaattgaaaa agaggcgctg gctttgatat ttgcggttac      2640
     acgctttcac agaatgattt atgggcgtcg attcattctg gaaacagatc acaaaccttt      2700
     attggctatt tttggtgcaa agaagggtat accaacgtat acagcaaatc gtttacaacg      2760
     atgggcatta actcttctgc tctacgattt ttcgattaac tatatctcta cagatagttt      2820
     tggtcacgcc gacgtattat cacgtcttat caatcgacat gtgcggccag atgaagagat      2880
     ggtcatagct aatctcactt tcgaaaaaag tattcggagc atcttgaacg aatcactgca      2940
     agcagtccca ttgtcgttca agacaattca aaatacaacc aaaaatgatg ataccttaca      3000
     acaaatcatc aagttcatta aggaaggttg gccacctaaa accatcataa acgatcctaa      3060
     aatcctacaa ttttatcaac gacgagatgg actgtctgtc gtagcagatt gtattatgta      3120
     tggagagaga ttggtcgtgc ctcccagttc cagggaaagt gtcctcaagc agctacacaa      3180
     gggacaccct ggtatcgaac gcatgcgctc gatcgcacgg cagtatgtgt actggccaaa      3240
     cgtcgatgaa gacgttgcac atatcgtaaa atcgtgtatc gaatgttcta gtgttgcgaa      3300
     aacagataga aaaacaactc ttgaatcctg gccagttccg gaaaaagcat ggcaaaggct      3360
     acatctcgat tatgcagggc ctgttaacgg ttactactat ctgattctgg ttgacgcata      3420
     ctctaagtgg ccagaagtga tgcgcactaa agacatcacc acaaccgcaa cattgcgcat      3480
     gctccgcaat attttcgcaa gacacggaca acctgaaaca ttggtcactg ataatggtac      3540
     acaatttacc agtaatatgt tcgaaacatt ttgtgagcac tatagtattg tgcatttgaa      3600
     gactgctcca tttcatccgc agtcaaacgg actagcagaa agattcgtcg acacattcaa      3660
     gagagccctt aaaaaaatta cagcaggggg ggaaacgtta gaagaagcaa tcgacacctt      3720
     tctgctgtgc tatcgttcaa caccatgtcg tagttcaccg gaaggaaaat caccagctga      3780
     gcacatttat aaaagaccaa tacggacagc tctcgaatta ttacgtccac cttcttcatc      3840
     gcacaaagtc catgataaca aacaagaaaa gcagttcaat ctcaaacacg gagcaaagaa      3900
     gcggcattac tcccctcagg acttagtgtg ggctaaagtg taccataaca acaaatggag      3960
     ttgggctcat gggcaagtta ttgagcaaat tggtagtgtg ctgtacaatg tatggttgtc      4020
     atcaacgagg aagctcattc gatcgcattg taatcagcta cgaagtcgac atgaagcaga      4080
     agtttcccag caagagcaac tagcaactac agacgttcag ataccgctgg cgatactcct      4140
     cgataattgt ggtcttaacg atgaagtaga aagagaaacc acaacatcca caacactccc      4200
     atcagaaatg ttggcagacc tggcaccacc acgtcaacga agccgtgttg ggtcaacacg      4260
     taacaacaat caaccaccgg tacctacacg tcaatcatcc agacaacgcg taccaccaac      4320
     cagatacgac gcgtatcatc tttactaaaa aaagggagg                             4359
//
ID   GYPSY64-LTR_AG repbase;    DNA;    INV; 187 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY64-LTR_AG is an LTR of retrotransposon GYPSY64_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY64_AG; GYPSY64-I_AG; GYPSY64-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-187
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY64_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 168-168 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY64-LTR is a long terminal repeat of GYPSY64_AG (its
CC   internal portion is deposited as GYPSY64-I_AG).
XX
SQ   Sequence 187 BP; 55 A; 40 C; 56 G; 36 T; 0 other;
     tgttggcagg acagcccact gtgcggtgtg aaccccttcg gctagcagtg cgtccacctg        60
     catttctata cgcatctcgg ggtgacaagt gacagctgcc ggatgccggg ggcacatggg       120
     aaaaaggagt attgtacaag agacgcatga gataaggtag tgaaataaag tacaagaaaa       180
     cgtaaca                                                                 187
//
ID   GYPSY65-I_AG repbase;    DNA;    INV; 4780 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY65-I_AG is an internal portion of retrotransposon GYPSY65_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY65-I_AG; GYPSY65-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY65_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4780
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY65_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 169-169 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY65_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY64_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY65-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies. The consensus encodes the 1331-aa
CC   GYPSY65_AGP gag-pol like polyprotein (pos. 689-4681). The
CC   sequence of the LTRs flanking GYPSY65-I is deposited as
CC   GYPSY65-LTR_AG.
CC   GYPSY65_AGP:
CC   MEPNKLFGNLPPLSLAGVPLTERRTKWTTWKRGFEIWLRTAKIVDGTEKKNLLLTCGSLELQEI
CC   FFSIPDADVEADVDQGVDPYEIAILKLDEYFAPQRHEAHERFLFWSMKPEPEETLEKFVMRAQA
CC   HGSKCNFGATAAESAGIAIIDKVLQFVPANLRVKLLQEKNLSLDEVIKQINSYETSRVANEQMS
CC   GRSKSFEIDNQHIHHIKTLCRFCGRTHGQQSCPARDKTCAKCGKRGHFAVVCYSNAGQTSNRLH
CC   TNQRMQKRPFGGHFNDSELNKKTAKFARKIHAIQDDGNEPLECELVEMVSSANDSDELIWAKVG
CC   GILIEMQIDSGVQSNIIDDRTWASMRNNQVKIIGEARSPDRKFKAYAQTDCLEIITMFEAEIAI
CC   ADGLKELRTISKFYVVKNGPQPLLGKITAKQLGVLYVGLPSQHESINQVETFRAFPSIRGVSIH
CC   IPIDKTVTPVAQRLRRLPLPMLDKVDSKLNELVAKDIIEKVSEPSSWVSPMVIVVKDCGSIRLC
CC   IDMRQVNKAILRETHPLPTIEDIRWRMNGAKYFSRLDIKDAFHQLLLDEESKTLTTFITHRGLY
CC   RYKRMMFGISCAPEKFQKILEQVLADCPNTVNFIDDIIVTGKTETEHDLALEKVMEKIEEYGIL
CC   LNQSKCVFKLTEIEFVGQRFNQNGMLPALNKIEAIRSFRPPKNCEEVRSFLGLITYVGTFIPNL
CC   ATVSFPLRELTKNNAEFVWERDQNKAFNELIRLVSNVERLAHFDPHLKTRVVADASPVGLGAVL
CC   LQFQNEQPKVIAYASKSLTSTEQRYAQTEKEALALVWAVERFQIYLFGIRFELETDHKPLEAIF
CC   SPTSSPCLRIERWVLRLQAFSYDVIYRKGKTNIADPLSRLSSPTEVSEFDPDSTVYIRSVMENA
CC   AIDVQEVEIASSNDAEMRALKECLERGAWNYTDELLKPYQAFRLELGTVGDLVVRGSKLVIPKA
CC   IRQRMLELAHEGHPGRTKMQQRLRCTCWWPGMDEAIARLVSSCSGCQLVSQPDKPEPMKRRPLP
CC   HKPWVDVAIDFLGPLPTGDYLLVIIDYFSRYKEVEIVKKITAIETSERLERIFVRLGYPRTITL
CC   DNGRQFVSNYFDNYCKQRGILLNKTTPYWPQENGLVERQNRSLLKRLKISQAQNGDWKKDLGAY
CC   LSMYYATPHSTTGKTPSELMFNRNIRTKIPSLGDISTGSALPMSDYRDRDTCMKEKGRVTEDQR
CC   RKAKPSDIIVGDRVLLRNTMPGNKLSTPFGPQIAKVIEKQGSRVTVQDEQNGKLYDRNSSHLKE
CC   YKDPDDHRDGCERVVDNQEEGVGFNEPTTEEIPRTLSRPKREIKRPARFLS.
XX
SQ   Sequence 4780 BP; 1616 A; 902 C; 1148 G; 1114 T; 0 other;
     aattggcgac gaggacagga ttaattttct ttattcctat ttgcaacacg agattgaagc        60
     atttgaattg aaataaaata gggtaagtta tcagagaagg acgaaagaaa tggggaaaag       120
     aaagattaag agcagaaatg aaataaagcg ttgaaagcat catagtgtta gtgctggctt       180
     gggttatgcg gagtacaaag gaagacaaaa ggataagtga atgctctgtg tcgagaaaac       240
     agaatggccg cctcggggga aaaaaaaaac aaaagagatg tgtagaaaga gctgtgtcaa       300
     gcaaacagca gtgaagcgtt atggaagcga aaggcaaaat tataagatct ataaaaagcg       360
     ctgtgtcttg aaaacagcaa ggccgcgtct tgcaagcgga tgaaataatt gaagatgcct       420
     ttaatgagcc gcgtctggaa gcggtagtgg aaaatgaaga agaggaagaa agagaatcaa       480
     ataagtacgc gtctagagag cggaaaaaaa agcgaagaaa aggaaggaag agaatttaat       540
     aaatgcgcgt ctagagagcg aggaaaaaaa ggaaatactc gatattaata gttatgactc       600
     gggaaagagt catgaatctg tcatgaaata gtgaactaat tgaatacttg atcgtattca       660
     caacctgctt catttcaggg aatcagcgat ggaaccaaac aaattatttg ggaatttacc       720
     accactgtcg ttagcaggcg ttcccctaac cgagcggcga acaaaatgga cgacgtggaa       780
     acgggggttc gaaatttggt tgcgtacggc gaagatagtg gacggaacgg agaaaaagaa       840
     tttactttta acttgtggtt ctctcgagct gcaagaaata tttttcagca ttccagatgc       900
     agatgtagag gcggacgtag accagggcgt agacccatac gagattgcta ttcttaaatt       960
     ggatgaatat ttcgctccac aaagacacga agcacacgag agatttttgt tttggtcaat      1020
     gaaaccggag ccggaagaaa cgctagagaa atttgtaatg cgtgcccaag ctcatggctc      1080
     caagtgcaat ttcggggcaa ctgcggcaga gagtgcaggg attgcaatca ttgacaaagt      1140
     gcttcagttt gtaccggcaa atttgcgagt caaacttctg caagaaaaaa acttgtctct      1200
     ggacgaagtc attaaacaaa taaattcgta tgaaacatcc cgagttgcca acgaacaaat      1260
     gagcggtagg agcaaatctt ttgaaataga taaccaacac atccatcata taaaaacatt      1320
     gtgtcgattc tgtggtcgta cccatgggca acaatcttgc ccggcacgag acaaaacgtg      1380
     cgcaaaatgt ggcaagcgag gtcatttcgc tgttgtatgc tactcaaatg ctggacaaac      1440
     ttcaaataga ctacatacga atcaaagaat gcaaaagagg ccgttcggag ggcactttaa      1500
     tgattcggaa ctaaataaga aaacggcaaa gtttgcaagg aaaattcacg caatccagga      1560
     tgacggaaat gaacctcttg agtgtgaatt agtggagatg gtatcttcgg caaacgattc      1620
     agacgaattg atctgggcga aagtaggcgg tatccttatc gagatgcaaa ttgattctgg      1680
     agtccaatcg aatatcatag acgatagaac gtgggcgtca atgaggaata accaagtcaa      1740
     gatcatcggc gaggcacgga gtccggatcg gaagttcaag gcatacgctc agaccgattg      1800
     tttagaaata attacgatgt ttgaggcgga aatagctatt gcggacgggt tgaaagaact      1860
     ccgtacaatt tccaaatttt acgtagttaa aaatggtcca caaccacttt tgggaaaaat      1920
     caccgcaaaa cagcttggag tattatatgt tggattacct agccagcatg aatcaatcaa      1980
     ccaggttgaa acatttcgcg cgttcccctc aattcgtgga gtcagcatcc acattccaat      2040
     tgataagacg gtgacacccg tagctcagcg actccgacga ttgcctttgc ccatgctaga      2100
     taaagttgat agtaaactaa acgagttggt cgctaaagac ataatagaga aagtatcgga      2160
     accgagcagc tgggtttcac ccatggtgat agttgtaaaa gattgtggaa gtattcggct      2220
     ttgcatagac atgcggcaag ttaataaagc aattttgcga gaaacgcatc cactaccaac      2280
     catagaagac atacgttgga gaatgaatgg tgctaaatac ttttctcgcc ttgacataaa      2340
     ggatgctttt catcaactac tgctcgatga agaaagtaaa actctcacaa cttttatcac      2400
     ccaccgtgga ctttatcgtt ataaacgaat gatgtttggg atttcatgcg ctccagagaa      2460
     attccaaaaa atattggaac aagttttggc cgactgtcca aacacagtca attttatcga      2520
     cgatatcata gttacgggaa aaactgagac cgaacacgat ttagcactag agaaagtgat      2580
     ggaaaagatt gaggaatatg gcattttact taatcaatct aagtgcgttt tcaaactcac      2640
     agaaatcgaa ttcgttggcc aacgttttaa ccagaacgga atgctccctg cactaaacaa      2700
     aattgaagca ataagaagct ttcggccacc caaaaattgt gaagaggttc ggagttttct      2760
     gggattaatt acttacgtgg gaacgttcat tccaaactta gctacagttt cattcccact      2820
     acgcgaatta acaaagaaca acgccgaatt cgtttgggag cgagaccaga acaaagcatt      2880
     taacgaactg atccggttag tttctaacgt cgaaagatta gcccattttg atcctcatct      2940
     aaaaacccga gtagtggcag atgcgtcccc agtagggtta ggagccgtcc tccttcagtt      3000
     ccagaacgag cagcctaaag taatagctta tgccagcaag agcctaacga gtaccgagca      3060
     acggtatgca caaacagaaa aggaggcact agcgttagta tgggccgtgg aacggttcca      3120
     aatctatcta ttcggaatac gattcgagct ggaaacggac cataaacctc tagaggctat      3180
     ctttagcccc acatcttctc cttgtttgcg gattgagcgt tgggtcttaa ggctgcaggc      3240
     ttttagctat gatgtaattt atcggaaagg aaaaacgaat atagctgatc ctctgtctcg      3300
     gttgtcaagt cctactgaag tatcagaatt tgatccagat tctacagtat atatccgcag      3360
     cgtgatggaa aatgctgcaa tcgatgtgca agaggtagag attgcttctt cgaatgatgc      3420
     cgaaatgcgg gctcttaagg agtgtttgga aagaggtgcg tggaattata cagatgaact      3480
     actgaaacct taccaagcat ttcgattgga actcggaaca gttggagacc tagtagtccg      3540
     cggtagcaaa ctagtaatac cgaaagctat ccggcaaaga atgctagaac tggcacacga      3600
     agggcatcct ggacgcacta aaatgcaaca acggctgcga tgtacttgct ggtggccagg      3660
     aatggatgaa gctattgctc gactggttag cagctgctca ggctgccaat tggtcagcca      3720
     accagataaa ccggagccca tgaagcgaag gccactacca cataagcctt gggtagatgt      3780
     agcaatcgat tttttgggcc cactaccaac tggtgattat ctactagtaa tcattgatta      3840
     cttcagtcgg tacaaagagg tcgaaattgt taagaaaatt acagcgattg aaacatctga      3900
     acgacttgaa cgaatatttg tgcgtcttgg ctatccgaga accataacac tcgacaatgg      3960
     aaggcaattt gtgagcaatt attttgacaa ctattgcaaa cagcgaggaa tattgcttaa      4020
     caagacaacc ccatattggc cgcaagaaaa tggtctggtt gaacgccaga acaggtcttt      4080
     gctaaaaagg ctgaagataa gccaggctca gaacggggat tggaaaaaag atttgggggc      4140
     gtatctctcc atgtactacg ccactccaca cagcaccaca gggaaaacac cgagtgagtt      4200
     gatgttcaac cgaaatatcc ggacaaaaat accatcattg ggagacatca gtaccggatc      4260
     tgcattacca atgtctgatt acagggatag agacacatgt atgaaggaaa agggaagagt      4320
     gacagaagat caacgacgca aagcaaaacc gtctgatata atagtaggag atagagtcct      4380
     attgaggaat acaatgccag gcaacaaact gagtacaccc tttggaccac agattgcaaa      4440
     agtaattgag aagcaaggtt ctcgcgtaac agtacaggat gagcaaaacg ggaaattata      4500
     tgacaggaat tcgagccacc taaaagagta caaggaccca gacgatcata gggatggttg      4560
     tgagagggtg gtggataacc aagaggaagg agtaggtttt aatgaaccaa cgaccgaaga      4620
     gataccgaga acactctccc gtccgaaacg agaaattaaa cgtcccgcta ggttcctatc      4680
     atagagtaag agattgggtg aaataatcag atgaaatcaa atagtaaata aataatttgg      4740
     ggaattgtat ttatcgttca ttattcggaa aaaagggaga                            4780
//
ID   GYPSY65-LTR_AG repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY65-LTR_AG is an LTR of retrotransposon GYPSY65_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY65_AG; GYPSY65-I_AG; GYPSY65-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-140
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY65_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 170-170 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY65-LTR is a long terminal repeat of GYPSY65_AG (its
CC   internal portion is deposited as GYPSY65-I_AG).
XX
SQ   Sequence 140 BP; 41 A; 32 C; 34 G; 33 T; 0 other;
     tgtggtatgt gttgtaagag ctcggcttta ttccgctcct tgctagagcg cggtataatc        60
     tgacaacgat gacagatagt cagaacacat acagaacgga gtgaagccag atcgtgtatt       120
     acagcaagct acccaccaca                                                   140
//
ID   GYPSY66-I_AG repbase;    DNA;    INV; 4352 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY66-I_AG is an internal portion of retrotransposon GYPSY66_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY66-I_AG; GYPSY66-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY66_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4352
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY66_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 171-171 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY66_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY64_AG, GYPSY65_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY66-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1409-aa
CC   GYPSY66_AGP gag-pol like polyprotein (pos. 95-4321). The
CC   sequence of the LTRs flanking GYPSY66-I is deposited as
CC   GYPSY66-LTR_AG.
CC   GYPSY66_AGP:
CC   MTTLDPSSMAALSHMIAEALKTAIGSAAGEARQDATPSTSRAPSFSHPAYRTTEGTVCDYFDRM
CC   EWALQLNGIPTEKYADYARVHMGAELNNALKFLIAPKLPQEILYKDLRKTLETHFDKQRNKFVE
CC   SIKFRQITQQQGESIAQFTLRLKQGAAHCDYGEFLDRMLIEQLLHGLMERGICDEIIAKNPVTF
CC   KDACEIASTLEATHNTAQEVNAGMPSVESTNKLGYEQPKTKKTPASRATSKPSKSTRRETSQGK
CC   PKQGTTNPGMCNGCGGNHLRNQCRFRDARCNTCNKKGHISKVCRSRKTNHDEDSINPVNTRPEA
CC   SIDYVQTLNALQTTSPSGKKMVEVTIDGHPLHMELDTGAPCGIISEAKLKTIKKQFRLLPSERQ
CC   FSSYSGHSITCLGRLPVNVAMGSANRKLNVYVVSGTSEPLFGREWIAQFSDQIDINSMFAPNVS
CC   VQSVTDTEPSAIQKSKLNDLLENFREVFSDTPGKLIGPPAKVHLKPGATPIFSKAREVPLSLRE
CC   RYAAEINKKIAAGFYERVDYSEWASPTHIVVKKNGNIRITGNYKPTVNPRMIVDEHPIPKVEDI
CC   FNKLKGAAFFCHLDLTDAYTHLPIDDDFKHVLTLNTVTHGLIRPTRAVYGAANIPAIWQRRMES
CC   VLQDLNNVVNFYDDIIVAAANFDNLLETLKGTLQKLKDNGLRLNRAKCVFAVPSLECLGHKIDR
CC   HGLHKSDKHIAAIRDAPRPNTPEELQLFLGKATYYSSFIPNLSTRARSLRDLLTAQTFEWNDVA
CC   DEAYQDIKEALISPQVLVQYDPTLPVILATDASKTGLGAVLSHRLSDGTERPIAYASCTMSKTK
CC   QKYPQIDKEALAIVWAVKKFFHYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMANYADYLA
CC   HFNFDVVFKPTNLNTNADYCSRIPNNSNVNQFKDEGRSSGDDFEQFAHVQIEQLPVRAEHIARE
CC   TRKDPHLGKILQHLEQGQNLGQYGYKAPESKYTIAANCLLFEHRVVIPSTLRQAILNDLHVAHF
CC   GIVRMKALARSYVYWPGIDADIEKTAKECHACARYGPTPPRFDSHHWEYPSAPWERIHIDFAGP
CC   VCNTMLLIVVDAFSKWVEVKPTNTITSAATIKILDELFATYGVPITVVSDNGTQFTAKEFKEFL
CC   QKSGVKYHKLTAPYHPATNGQAERYVQTVKNGLKAMGTTSANLTRNLNTFLQHFRKTPHAETKD
CC   SPAKLFLGRNIRTRLDLVRPQAVHASVSERQKAQFRPAFRTLPPGQSVYVLSGNTRMDKWIPAT
CC   IFARLGDLHYDVLYNGQHLKRHIDQIRRFEMKTNDEEESSSAAISPPVATTTTSTPLAVSSSTA
CC   TRRLRFYGHAAPSAPAEPEQVVTADDDLEDETFSTPPSSPQPPGNVSTTLRRSTRLRQPPKKFS
CC   P.
XX
SQ   Sequence 4352 BP; 1329 A; 1127 C; 919 G; 977 T; 0 other;
     tttggtgtca gaagttccgg atttacggtc cacagtctgt aacgtacatt acccttgtga        60
     gagattcact gtgagaagaa aaacttactt taaaatgacg acactagatc catcgtctat       120
     ggctgcgcta tcccacatga tcgcggaagc cctaaaaaca gccatcggat cagcggcagg       180
     ggaagcacgc caagatgcaa caccctcgac gtcacgggca ccgtcatttt ctcatccagc       240
     ttatcgcacc accgaaggga ccgtctgcga ctatttcgac cgaatggaat gggccctgca       300
     gctgaacggt atccctaccg aaaagtatgc cgattacgcg agagtccaca tgggagccga       360
     gttaaacaac gcgctaaagt tcctgattgc accgaagcta ccgcaagaga ttctgtacaa       420
     ggatctccgg aaaacgctcg aaacgcattt tgacaaacag cgcaataagt ttgtcgaaag       480
     catcaagttc cggcaaatta cgcagcagca aggggaaagc atcgcacaat tcacactacg       540
     cctgaagcag ggagctgctc attgtgatta cggagagttc ttggaccgca tgctcatcga       600
     acaattgcta cacggactaa tggaacgtgg tatttgcgac gagattatcg caaagaatcc       660
     agtaaccttt aaagatgcat gtgagatcgc cagcacgctg gaagcaacac acaacaccgc       720
     gcaggaggtt aacgcaggga tgccgtccgt cgaatcaacg aataagttgg gttacgagca       780
     gccgaagaca aagaagacac ctgcatctcg tgctacgtcg aagcccagca agtcaacgcg       840
     gcgagaaacg tcccaaggta aaccaaaaca aggtacaaca aatccaggta tgtgcaatgg       900
     ttgtggtgga aaccacctcc gaaatcaatg tcgttttcgt gatgctcgtt gcaacacgtg       960
     caacaaaaag ggacacattt ctaaagtgtg tagatctcgg aaaactaacc acgatgaaga      1020
     ttctattaat cccgtaaaca cccgcccaga agcctccatc gattacgtac aaacgctaaa      1080
     tgccctacaa acaacttcgc catccgggaa gaaaatggta gaagttacga tcgatggaca      1140
     tcctttacac atggagcttg acacaggagc cccatgcggt attatttcgg aagcaaagtt      1200
     aaaaacaatt aaaaaacaat tccgcttact tccatccgaa cgacagtttt ctagctattc      1260
     aggtcacagc atcacctgtt taggacgttt gccagttaac gtagccatgg ggtctgcaaa      1320
     tagaaaacta aacgtttatg ttgtttcggg aacatccgag ccgttattcg gtagagaatg      1380
     gatcgcgcag ttttcagatc agatcgatat aaattccatg tttgctccta atgtttctgt      1440
     ccaatcagtc actgacacag aaccatcagc cattcaaaaa tcgaaactca atgatctttt      1500
     ggaaaatttt cgagaagttt ttagcgatac ccctggaaag ctaattggtc ctccggcaaa      1560
     agtacatcta aagcctggcg ccacacctat tttttctaag gctagagagg tgccactttc      1620
     tctgcgagag cgttacgcag cagaaatcaa caaaaagatt gcagcaggct tttacgaacg      1680
     agttgactac tccgaatggg cttcacccac acacatcgtt gttaaaaaga acgggaacat      1740
     cagaattacg ggtaattaca aaccgactgt taatcctcgt atgatagtcg atgaacaccc      1800
     catcccgaag gtcgaggaca tttttaacaa actcaaggga gctgccttct tttgtcatct      1860
     cgatttaacc gatgcataca cgcaccttcc tatagacgat gatttcaagc acgtccttac      1920
     gctaaacact gttacacatg gtctcatccg accgaccaga gcagtttatg gagccgccaa      1980
     tatcccagca atatggcaaa ggcgtatgga aagcgttctg caagacctaa acaatgtggt      2040
     caatttttac gacgacataa tcgtagccgc agccaatttc gacaacctgc tcgaaaccct      2100
     caaaggtaca ctacagaaac taaaagataa cggactccgg cttaaccgag cgaaatgtgt      2160
     atttgctgtt ccttcgttag agtgtcttgg tcacaaaatc gatcgccatg ggttgcacaa      2220
     atccgacaaa cacattgccg caatccgtga tgctccacgt ccaaacaccc cggaagagct      2280
     gcagctattt ttaggcaaag ctacctatta cagttcgttc attccgaacc tttcaacacg      2340
     agctcgtagc ttacgtgatt tgctcacagc gcagacattc gaatggaatg acgtcgcgga      2400
     tgaagcctac caagatatta aggaagcgct aatctcaccg caagtcttgg tacaatacga      2460
     tcctacactt cccgtcatct tagccacgga tgccagcaaa accggtttgg gagccgtact      2520
     atcacaccga ttgtctgatg gaacggaacg tcccatagct tatgctagct gcacgatgtc      2580
     caaaacaaag caaaagtatc cgcagataga caaagaggcg ttagcaatcg tgtgggcagt      2640
     gaaaaagttc tttcactatt tgtatgcacg taaatttact ttagtgacgg accataaacc      2700
     gctaacacaa attctacacc ccgagaaatc ccttccaacg ttgtgtatta gcagaatggc      2760
     gaattatgct gactacttgg cacacttcaa cttcgatgtt gtattcaagc ctacaaatct      2820
     caacacgaac gctgactact gttcgagaat tccgaacaat tctaatgtca accaattcaa      2880
     agacgaggga agaagctcag gcgacgattt tgaacaattt gcgcatgtcc aaatcgaaca      2940
     actgccagta agagcagagc acattgctcg agaaacacgc aaagatcctc acctaggaaa      3000
     aatccttcaa caccttgagc aaggtcaaaa cctcggacaa tatggataca aagcacccga      3060
     atcgaagtac acaatcgcag ccaactgttt actctttgag caccgagtag tcataccaag      3120
     cacactacgt caagccattc ttaacgattt gcatgtggca cacttcggca tcgttaggat      3180
     gaaagcctta gcccgatcat atgtctactg gcccggcatc gacgccgata tagagaaaac      3240
     agctaaggag tgtcacgcat gtgctcgtta tggaccaaca cctcccaggt tcgacagcca      3300
     tcactgggag tatccgagtg ctccctggga gcgcatccat attgacttcg ctggtcccgt      3360
     atgcaacact atgctgttaa ttgttgtcga cgcttttagt aaatgggtcg aagtcaagcc      3420
     cacaaacact ataacttcag cagcaacaat taaaattcta gacgaactct ttgcaacgta      3480
     tggagtaccg atcaccgtag tatccgataa cggtactcag ttcaccgcaa aggagtttaa      3540
     agagttcctg caaaagagtg gagtcaaata tcacaaactc accgcacctt accacccagc      3600
     aaccaatgga caagccgaac gttatgtcca aacggtgaaa aatggtctca aagctatggg      3660
     aacaacaagc gctaacctca cacgcaactt aaacacattc ctacagcatt tccgtaaaac      3720
     tccacacgcc gagacgaaag actctccagc caaactgttt cttggacgaa acattcgtac      3780
     tcgactcgac ctcgtgagac cacaagctgt tcacgccagt gtctccgaaa gacaaaaagc      3840
     ccagttccgg cctgcgtttc gaactttgcc acctggacag tccgtctacg tactatcagg      3900
     caacacgcgc atggacaagt ggattccggc taccatcttc gcccgattgg gagacctaca      3960
     ttacgatgtg ttgtacaacg gtcaacattt gaagcggcac attgatcaaa ttcgacggtt      4020
     tgaaatgaag accaacgatg aagaagaaag ttcttcagct gcaatctcac caccggttgc      4080
     aacgactacc acatcgacac cactagctgt atcttcaagt accgctacta gaaggcttcg      4140
     tttctatggc cacgcagcac cgtcagcccc agcagaacca gagcaggtcg taacagctga      4200
     tgacgatttg gaggatgaga ccttctcaac accaccttcc agcccacaac caccaggaaa      4260
     cgtgtcaaca actttgcgtc gttcgaccag actccggcag cctcccaaga aattttctcc      4320
     ctagaagcat ctttattaaa gcagggagga aa                                    4352
//
ID   GYPSY66-LTR_AG repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY66-LTR_AG is an LTR of retrotransposon GYPSY66_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY66_AG; GYPSY66-I_AG; GYPSY66-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-197
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY66_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 172-172 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY66-LTR is a long terminal repeat of GYPSY66_AG (its
CC   internal portion is deposited as GYPSY66-I_AG).
XX
SQ   Sequence 197 BP; 57 A; 46 C; 37 G; 57 T; 0 other;
     tgttatgtat gtgaacgcag gataagtgac agacgtcaac agctgtcatc caagcagacc        60
     acgccgcttg cgtccgcgct ttttggactt cttcttttct ctccgattgc cattgttatc       120
     gcgtataaaa cgaattgtgt aaacccgaag tattttttct aataaaccag tgaactcaca       180
     acagtaaata cagaaca                                                      197
//
ID   GYPSY67-I_AG repbase;    DNA;    INV; 4715 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   28-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY67-I_AG is an internal portion of retrotransposon GYPSY67_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY67-I_AG; GYPSY67-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY67_AG; mag lineage; reverse transcriptase.
XX
NM   GYPSY67-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4715
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY67_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 173-173 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY67_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY67-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies. The consensus encodes the 1529-aa
CC   GYPSY67_AGP gag-pol like polyprotein (pos. 117-4703). The
CC   sequence of the LTRs flanking GYPSY67-I is deposited as
CC   GYPSY67-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..4703
FT                 /product="GYPSY67_AGP"
FT                 /note="gag-pol"
FT                 /translation="MNSGDGAMEVPMDEDQRRSSLGRIDYRAMTAQQTGEV
FT                 PSVYDPPGHVQPGSRGYVSQQGQLTPRPVQLGPSPSQPAPSQSAPLPSVQN
FT                 GQMGQQPLDNAVLQQTLHLLQQQLKQQQQLISQMLQQQQSAPPAQLQPAQQ
FT                 YQPAGPSNPELILDALANSIAEFRYEAESGVTFEAWFTRYEDLFAKDASRL
FT                 GDEAKVRLLVRKLGTPEHARYISYILPRSPRDLSFEETVDKLTALFGCRES
FT                 LLSKRYRCLQICKKRTEDLIAFSCRVNRACVEFQFASMNEETFKCLMLVCG
FT                 LKDEADNDLRTRLLARIEERNDVTLEQLSAECQRITSVKGDSAMIAGETSE
FT                 RVFAVHSGEKRSHEKAAQQTNYKRFTPYRTKRPFRAKYAVCSSTSKPAKPC
FT                 WLCGDMHWVRECTYRSHKCLDCARYGHREGHCNTASRKKRFNVRQRNINTR
FT                 VVTVNVRSIRERRRFVSIALNGTAVRLQLDTASDISVIDRRTWRKIGSPPL
FT                 TPSSVTAKTASGATLVLDGEFSCAVSVGSQTRQATLSVCGAANLLLLGADL
FT                 IDVFSLWSVPMDAFCNHVTVAGQQSFQQLFPKVFTGTGLCTKASIKFTLRD
FT                 NVRPVFRPSRPVAYAMEETVSRELDRLEELNVITPVTTAEWAAPVVVVRKA
FT                 NGLVRICGDYSTGLNAALFPHDYPLPVPEDIFARLANCKVFSKIDLSDAFL
FT                 QVEIDPEYRHFLTINTHRGLYTYNRLPPGIKIAPTAFQQLMDIMLSGIQGV
FT                 SVYLDDIIIGGPSEAEHDATVVEVLNRIQNYGFTLRAEKCHFRVNQIKYLG
FT                 HIIDSHGLRPDAQKVEAIRKLPEPTNLTEVRSFLGAINYYGRFVPNMRNLR
FT                 YPLDDLLKAGVEFRWTSECRKAFESFKTILASDLLLTHYDPKQAIIVSADA
FT                 SSVGLGATISHKYPDGSIRVVQHASRALTAAEKAYSQIDREGLAIIFAIKK
FT                 FHKMIFGRKFLLQTDHRPLLRIFGSKKGIPNFTANRLQRFALTLLAYDFEI
FT                 EYVRTDQFGNADLLSRLIHTHAKPDEDSVIACVTLEAEVKSLVTSAIQHVP
FT                 VNFIDISRETIADRLLSKVLQYVQHGWPNNAAYEGELSRFHDRKDSLTAID
FT                 GCLLFRERVVIPKVLQRTCLKQVHLGHPGINRMKAMARSYFYWPSMDHDIV
FT                 DWVNSCHSCQIAAKSPTHIKSTSWPEAPGPWYRIHVDYAGPLNGEWYLVIV
FT                 DSFSKWPEVIPTSSTTTTATISILRNIFARFGNPVTLVSDNGPQFTSTDFE
FT                 SFCRQNGVEHIRTAPYHPQSNGLAERFVDTFKCALRKMSADGLTLREALDT
FT                 FLQTYRATPNAQLNNSKTPAEIMLGRRPRTLLELLLPPRQASQPSAGLRVR
FT                 ELNPGESIYAKEYRLNDWKWVTATVVDRQGRYMYLVRTAEGKTFRRHINQL
FT                 RRRISDGSFKDTTRAHSPLPLDLLFDAWHFNPSPVPASSGQLEADKPSSPP
FT                 APVSSCVVPSSNFNIESSRPTLIKCPRRRATSRRTDQTIDSVHEPRRSSRN
FT                 RRPPSRFDVYRTF"
XX
SQ   Sequence 4715 BP; 1280 A; 1152 C; 1170 G; 1113 T; 0 other;
     gtggcgacga gaatttgttt taaaagttta gtgtctgtaa agtaaaagtc tgtgttttaa        60
     cgtgtaagag tgtttaaaaa aaaaaaaact ccagcatcac gtcgaagcgg cgcaggatga       120
     acagcggaga tggagcgatg gaagtcccga tggatgaaga ccagcgacga tcatcgttag       180
     gccgtatcga ttaccgtgca atgacggccc aacaaaccgg tgaggttcct tccgtgtacg       240
     acccgccggg ccatgttcaa cctggatcgc gcggctacgt gagtcagcaa gggcagttaa       300
     caccgaggcc agtgcagcta ggaccatcgc catcgcaacc agcgccatca cagtcagcac       360
     cattgccatc cgtacaaaat ggccagatgg gtcaacaacc tctggataac gccgtcctgc       420
     agcaaacctt gcacttgctg caacagcaat tgaagcaaca gcaacagtta atttcgcaaa       480
     tgttgcaaca gcagcaatcc gcgccgccag cccagctaca acccgcacag cagtaccagc       540
     ccgccggtcc tagtaaccca gaacttatac tcgatgcttt ggccaatagc atagcagagt       600
     tccggtatga agctgaatct ggtgttacgt tcgaagcttg gttcacacgc tacgaggacc       660
     tgtttgccaa agacgcttcg cggctaggcg atgaggctaa ggtaaggctt ttagtgcgta       720
     agttgggaac accagaacac gcccgttata taagctatat tttaccccgc tcaccacgtg       780
     atttatcgtt tgaggaaacc gtcgataagc tgacagcact ttttgggtgt agagaatctc       840
     tccttagtaa gcgctacaga tgcctccaga tttgtaaaaa gcgcacggaa gatttgatcg       900
     cgttctcttg tcgggtaaac cgagcatgcg tcgagttcca gtttgcgagc atgaacgaag       960
     agaccttcaa gtgcctaatg ctggtgtgtg ggctcaaaga tgaggctgac aatgacctgc      1020
     gaactagact ccttgcgcgc atagaggagc ggaacgacgt tacgcttgaa caattatccg      1080
     cagagtgtca gcgtattaca agtgtgaaag gagacagcgc tatgattgcc ggagagacga      1140
     gtgaacgtgt tttcgcagta cacagcggag agaagagatc gcacgagaaa gcagcgcagc      1200
     aaactaatta caagcggttc acgccgtacc gtaccaaacg accgttccgt gcaaagtatg      1260
     ctgtgtgttc atcaacaagc aagccagcga agccctgttg gttgtgtggt gacatgcact      1320
     gggtgcgtga gtgcacttac cgttcgcaca agtgtctcga ctgtgcaaga tatggtcatc      1380
     gtgagggaca ctgcaacaca gcgagcagga agaagcggtt caatgttcgg caacggaata      1440
     tcaacactcg tgtagtaacg gtcaacgtcc gaagcatacg agagcgccgc agattcgtgt      1500
     ccatcgctct caacggaaca gctgttcgat tgcagctaga cacagcttcg gatatcagtg      1560
     tcatcgaccg ccgtacgtgg agaaaaattg gcagcccgcc tttaacaccg tcatccgtca      1620
     cagctaaaac tgcatcggga gctacactgg tattggatgg tgaattcagc tgtgctgtta      1680
     gtgttggtag ccagacgagg caggcgacac tcagcgtatg cggagcagca aacctactac      1740
     tactgggagc cgatttgatt gatgttttct ccctctggtc ggtgccgatg gatgcgttct      1800
     gcaatcacgt tacagtagca ggacagcaat cgttccagca gctttttccc aaggtgttta      1860
     cgggaacagg actctgtaca aaggcgagta taaaatttac cttgcgagat aatgttcgtc      1920
     ctgtttttag acctagccgc ccagtagctt acgcgatgga ggaaaccgtg agtcgtgagc      1980
     tcgaccgtct tgaggagttg aatgtcatca ctcctgtaac tactgcagaa tgggcagctc      2040
     cagtggtcgt cgtgcgcaaa gccaacggac ttgttcgtat ttgcggcgac tattcgacgg      2100
     gacttaatgc tgcgttattc ccccacgact acccgttacc tgtaccagag gacatttttg      2160
     caaggctggc aaattgcaag gtctttagca aaatagacct gtcagatgca tttttgcaag      2220
     tggaaattga tccagaatac cgtcatttct tgaccataaa tacgcatcga gggctctata      2280
     cgtacaaccg acttccacct ggcattaaga tagctcctac agcctttcag caattgatgg      2340
     acataatgct atccggtatc caaggcgttt cagtgtactt ggatgacatc atcatcggag      2400
     gtccatccga agcggagcac gacgcaaccg tagtagaagt tttgaatcga attcagaact      2460
     acgggttcac actgcgagcg gaaaaatgcc acttcagggt taaccaaatt aaatatttgg      2520
     gccacattat cgacagccat ggattacggc ctgatgcgca gaaggttgaa gctattcgca      2580
     agttaccgga gccaaccaat ttaaccgaag taagatcgtt tttaggggcc ataaactatt      2640
     acggtcggtt tgtacccaac atgagaaatt tgcgctatcc attggacgat ttgttaaagg      2700
     ccggagtcga atttcgctgg acgtcggaat gcagaaaagc ttttgagagc ttcaagacga      2760
     tattggcttc cgatttacta ctaacccatt acgatcctaa acaagcaatc atcgtatctg      2820
     ccgacgcatc atcagttggc ctcggggcga caataagcca taagtatcct gacggatcta      2880
     ttcgggtggt ccagcatgcc tcgcgcgccc tcacagcggc agaaaaagca tacagccaga      2940
     ttgatcgcga gggcttggcc ataatttttg cgataaaaaa atttcataag atgatattcg      3000
     gcagaaagtt tttattacaa acagatcatc ggccgctttt gcgaatattt gggtcgaaaa      3060
     aagggatccc caattttaca gccaatcggt tgcaacgttt cgctcttacc ctactggcat      3120
     atgattttga aatagaatac gttcgcaccg atcagtttgg caacgctgac cttctttccc      3180
     gcctgataca cacacacgcc aagccagacg aagattcagt gatagcatgt gttacattag      3240
     aggcggaagt aaaatcattg gtaactagcg ctattcagca tgttccagtt aattttatcg      3300
     acataagtag agaaaccata gccgacagat tattatccaa agtccttcaa tacgttcaac      3360
     atggatggcc aaataatgca gcttatgaag gagaactgtc gcgcttccat gacagaaaag      3420
     attcgcttac agcaatcgac gggtgtctcc tatttagaga gagggtggta atccccaaag      3480
     tattgcaacg cacctgcttg aaacaggttc atctcgggca cccaggaata aataggatga      3540
     aagccatggc cagaagttat ttttattggc catcaatgga ccatgacatt gtcgattggg      3600
     tgaactcgtg tcattcatgc cagatagcag ctaagtctcc aactcacatc aagtcgacca      3660
     gctggccaga agcaccaggt ccgtggtacc gcattcatgt cgactacgcg ggaccactca      3720
     acggggaatg gtacctggtg attgtcgatt cgttctccaa gtggccagaa gtgattccaa      3780
     cgagcagtac aacaacaacg gcaacgataa gtatactgcg taacatattt gctcgttttg      3840
     gcaacccagt aacacttgtg tcggataatg gtccacaatt cactagcaca gattttgaat      3900
     ctttttgtag gcaaaatggg gttgagcaca tcaggacagc gccgtatcac ccgcaatcca      3960
     acgggctggc tgaaaggttt gtcgacacct ttaagtgcgc tttgaggaag atgtcagccg      4020
     atggtctcac gttacgagaa gctctggaca ccttcttgca gacctatcgg gccaccccga      4080
     acgctcagct gaataattcg aaaactcctg ccgagattat gctaggcagg cgtcccagga      4140
     ccttgctaga gctgttattg ccgccacgtc aagcttcaca accgagtgct ggtctacgag      4200
     ttcgtgagct gaatcccggt gagtcgatct acgctaagga gtaccgcctg aacgattgga      4260
     aatgggtcac tgctacggtg gtcgatcggc aaggcagata catgtacctg gttcggactg      4320
     ctgaggggaa gacgttccgt cgacacatta atcagctacg tcggcgtatc agcgacggtt      4380
     cgtttaagga cacaacacgg gcccattcac cactaccttt ggatctgtta ttcgatgctt      4440
     ggcactttaa tccgtcacca gtacctgcat catcgggcca gctagaagct gataaaccgt      4500
     cctcaccgcc agcgcctgtg tcgtcctgtg ttgtaccatc tagtaatttt aatattgaga      4560
     gcagccgtcc aacactcatc aaatgtccac gaagaagagc tacatcccgc agaacggatc      4620
     aaacaatcga ttcggtacat gaaccacgtc gctcttctcg caacagaaga ccgcccagtc      4680
     ggttcgatgt gtaccgaacg ttttaaggag ggaga                                 4715
//
ID   GYPSY67-LTR_AG repbase;    DNA;    INV; 236 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY67-LTR_AG is an LTR of retrotransposon GYPSY67_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY67_AG; GYPSY67-I_AG; GYPSY67-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-236
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY67_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 174-174 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY67-LTR is a long terminal repeat of GYPSY67_AG (its
CC   internal portion is deposited as GYPSY67-I_AG).
XX
SQ   Sequence 236 BP; 54 A; 56 C; 52 G; 74 T; 0 other;
     tgttatggtg aatattttgc cttagtgagc caacctgtat gtatcacggc tctcactgat        60
     gagtgcacgc atctcgtgag atgccgttag gttcgggctt atgacgtgat ccccgaagga       120
     tcactctctc tccggcgcgc ctccaattag gatagtgaat aaacgttttt atatgtgtta       180
     acttattcgc gtgcattcgt ccacctcttt taaatgcatg acgacagacc ttaaca           236
//
ID   GYPSY68-I_AG repbase;    DNA;    INV; 5536 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY68-I_AG is an internal portion of retrotransposon GYPSY68_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY68-I_AG; GYPSY68-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY68_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5536
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY68_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 175-175 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY68_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY68-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 345-aa
CC   GYPSY68_AG1p gag-like polyprotein (pos. 958-1992) and the
CC   1024?aa GYPSY68_AG2p pol-like polyprotein (pos. 2430-5501).
CC   The sequence of the LTRs flanking GYPSY68-I_AG is deposited as
CC   GYPSY68-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           958..1992
FT                 /product="GYPSY68_AG1p"
FT                 /translation="MAGWTVENNLECALEVRSESKEKDYKGDFLAGSWPLK
FT                 PFSEELPIHERKAEWARFKGQYERIVMCKGKVNSEMKLIALKVFAGSYLLN
FT                 IIEMQERRVKSGEGDVYTETVKGVDDFFNGICDEGKERMKLREMKMEADET
FT                 FGDWVLRLEAQVKFCGLPEEQKTEELVQAVLRRSVPQIAEKLFEMADLFGN
FT                 ELDKLVKHGKHLDFVRMEKREIEQKLAKSTTKEFTDSDNYVAAVTSWRTKR
FT                 ERYEPYEQQQNKRLSGMHSNGFRNTYNKGATKCSKCDKIHGWGKCGASRSK
FT                 CFRCGAIGHLAICCRTRLGSNRFPNVVKKQTEDINQVVIGDPAAERYQKKK
FT                 NK"
FT   CDS           2430..5501
FT                 /product="GYPSY68_AG2p"
FT                 /translation="MIGNVPIIFLLDTGASVNTVTAESWWQIRTHAQSSVR
FT                 EWQPHPETTLRSYANSAVLDVECSFKAIICAGGTNRTMAKFFVVKGAEISL
FT                 LSFNTAVSLGLVCIGPGKHYMLRNKTQETTVKDTFPKLNIGAVKFRIDKTV
FT                 TPKQIIRYNIPKAFERAVNERLEEMELNGIIEYVDSEDAEISFVSPMVLVP
FT                 KGNKDFRIVIDYREANKAIIRDPYPMPSLERIWTDIPNNDGKILFSKIDLK
FT                 DAYFHIELHSEVRHLTAFMTMNGLMRFKRLPFGLSCAPEIFQKEMEKVFRN
FT                 CKNVLIYLDDILMYGKSLKELKEIENMVREVIKKNGLTINEEKSCYGQEKV
FT                 NFLGLTLDGEGILPMREKMTAIQNFDRPKDAGELRSFLGMLTFIGPFIRDF
FT                 SHKTKPLRDLIKRDKFKWEEMHQNTFEELKKVAMEDLIKRGYFNEKDRIIL
FT                 YTDASPWGLGAILAQEKLSTSEMRIIACASKGLTETESRYPQLHREALAIV
FT                 WAMERFAYYLLGRKFLLRSDSEALKFMIKPAKQKDIGKRIMSRAEGWFIRL
FT                 DHYDFDFEHVPGNENIADTASRLCRSKEDYQFGVAKEPHELCLVTACVNQV
FT                 NETLLALTTEEVGKELEKDVILNKVIAWLDKENEWPQEIARYKAFQRELYV
FT                 ENGFLFKQEKMVLPHILRNRALTLAHRSHPGMSTMKNVLRTGLWWPGMDKE
FT                 IEAFVRSCPECQLVKTTNTAVPIELTELPENPWDYVSMDISSTTDNVKTLV
FT                 LTDNYSRFLIAVPLERTDANSIQKALNRIFLTYYVPKKLKADNGPPFNAVD
FT                 FKRWLADVWGIKLINSTPLNPTENGLVERGMQGINKIAAIARLEKKCWKQA
FT                 LAEYVADYNSWPHHVTKIAPAELMFGRAIRHRLPNPKTDTRQANDDELRDR
FT                 DKMAKFQRNQREDTRRGARPLSIKPGDTVLVRNQKADKTDSSYKKELHEVL
FT                 KICGAGRVTVKEKKSGKIYDRNVKHIKKFFMRKAEEGLTSGSSSSEEVAGL
FT                 VKERQARLIKKPKRLIEY"
XX
SQ   Sequence 5536 BP; 1925 A; 859 C; 1354 G; 1398 T; 0 other;
     ttggcgatcc tgccatgatg aataaaagcg ctcctaggtt gaagaaaata aggagtgata        60
     aaaaaaaaaa ggagaggaag gataaaaaca ggcgatataa aggataaacc gagtggtagc       120
     ctggtgcatc tcatggcccc tccaaaaagg tgtaagcccg agtggtagcc aagttcagct       180
     catggcccct cgaagaatgt gtaagccaga gtggtagccg agtttagctc atggcccctc       240
     gaagaaaatg tatacgcgag tggtagccga gttcagctca tggcccctcg aagaatgtgt       300
     aagccagagt ggtagccgag tttagctcat ggcccctcca agaaagtgta agccagagtg       360
     gtagccgagt ttagctcatg gcccctcgaa gaaaatgtat acgggggtgg tagccgagtt       420
     tagctcatgg cccctcgaag aaagtgtaag ccagagtggt agccgagttt agctcatggc       480
     ccctcgaagg aaatgtatac gcgggtggta gccgaattca gctcggctga aaaaaaaaaa       540
     aaaaaaaaaa aacataaagc ggtatatcgt tttttttttg tttcgcgttc ttcttcttct       600
     tctttttctt atttatttca gccagcagaa cccggctgac cggtctggta cagctgcccg       660
     atattcaaca ataacaattc tatggaatac aatggatggt cggtcactgg tttgcttaga       720
     tggattcaac cgaacccggc tgttgtccgg cgtgatggcg tgccgtccaa gatttggcaa       780
     aaacaattcc atggaattca atgccatggt aaacaagtgt gattgtataa gtgacgatcg       840
     cacacatagc attgcaacgg gtgggctggt ggcaacctga gctatcagga tcagtcgctt       900
     ttggtgtagc aagcggacag catcgtcaca gaacaagcac ggaagtggtt tagaaagatg       960
     gcaggttgga cagttgagaa caatttggag tgtgccctgg aagtgcgtag tgagagcaag      1020
     gaaaaagatt acaaggggga ttttttggcc ggttcttggc cgcttaaacc attttcggaa      1080
     gagcttccta tccacgagcg gaaagcagag tgggcgcgtt ttaaaggaca atatgagaga      1140
     atagtgatgt gtaaaggaaa agtgaattcg gaaatgaagt tgatagcttt gaaagtattt      1200
     gctggaagct atctgctaaa cattatagaa atgcaggaaa gacgagtgaa aagtggtgaa      1260
     ggggacgtgt atacagaaac agtgaaaggg gtagacgatt ttttcaacgg catatgtgat      1320
     gagggaaaag aaaggatgaa gctgagagaa atgaaaatgg aagctgatga aacatttggt      1380
     gattgggtgt taagattaga agctcaagtg aaattctgtg gtctgccaga agaacagaaa      1440
     actgaagagt tagtgcaagc tgtgttgcga cgttcggttc cccagattgc cgaaaaattg      1500
     tttgaaatgg cagatttatt tgggaatgaa ttggacaaat tagtaaagca tggtaaacac      1560
     cttgatttcg taagaatgga aaagagagag atagaacaaa agcttgccaa aagcacgaca      1620
     aaagaattta cagatagcga taattatgta gcggcagtga cttcgtggag aacgaaaagg      1680
     gaacgatatg agccgtacga acaacaacaa aacaagagac tatcgggaat gcattcaaac      1740
     ggttttcgga acacgtataa taagggagca acgaaatgct caaagtgtga caaaatacat      1800
     ggctggggga agtgtggagc atccagatca aaatgcttcc ggtgcggtgc cataggacat      1860
     ctggcaattt gttgcagaac cagattggga tcaaatcgat ttccaaatgt ggtgaagaag      1920
     cagaccgagg acattaatca ggtggtaata ggagaccccg ctgcagaacg gtaccaaaaa      1980
     aaaaaaaata aataaataaa taaataaata aataaataaa taaaaaaaaa ttaaataaaa      2040
     taaataaaaa aaaaaataaa aaaaaataaa aataaaaata acaacaaaaa aaaaaaaaaa      2100
     cttattatca tgctatatat gtatatgtgt atgtgtgtat gtgtgtatgt gtgtatgtat      2160
     gtgtgtatgt atgtatgtgt gtatatgtgt atgtatatat atatatgtat atatgtatgt      2220
     atatgtgtgt atatatatat atatatatat ttatatatat atatagcaag ctgaaattgc      2280
     tcgccgtcaa aagttcatga gtgtgtgggc aaaagtgtat ttttgattca cttatcttat      2340
     ttatttcgtt ttattttaat ttactttaac agttttccga cgaacgagga aggcatgcag      2400
     taaccgacga tccaaggcgc attaactgca tgatcggaaa tgtgcctatc attttcttac      2460
     tagatactgg ggcatcggtg aacactgtta ctgctgagag ttggtggcaa ataaggacac      2520
     acgcccagtc gagtgtgcgt gaatggcagc cacaccctga aacaacgctg cggagttatg      2580
     cgaatagtgc agttttggac gtagaatgct catttaaagc aataatatgt gcaggtggaa      2640
     ctaatagaac tatggcaaaa ttttttgtgg taaagggagc tgaaatatcc ctgttaagtt      2700
     ttaacacagc agtcagctta ggtttagtat gcataggacc tggaaagcat tatatgttgc      2760
     gtaacaaaac acaagagacg acagtaaagg atacatttcc taaattgaat attggtgcgg      2820
     tgaaatttag aatagacaaa acagtcacac ccaaacaaat aatacgttat aatataccta      2880
     aagcatttga gagagccgtg aatgagagac tagaggaaat ggagcttaac ggtatcattg      2940
     agtatgtaga cagcgaggat gcggaaatat cttttgtgtc acctatggtg ctagtgccga      3000
     aaggaaataa ggactttaga attgttattg attatagaga agcgaataag gctatcatac      3060
     gagatccgta ccccatgcca tcattagaaa gaatttggac tgatatcccc aacaacgatg      3120
     gaaagatttt gttttctaag atagatttga aagacgcata ctttcacata gaattacata      3180
     gtgaggtgcg ccatttgact gcgtttatga cgatgaatgg attaatgcgg ttcaagagat      3240
     tacctttcgg gctatcttgt gcaccggaga tttttcaaaa agagatggag aaagttttca      3300
     gaaattgcaa aaatgttctt atatacctag atgatatttt gatgtacggt aaatcgttga      3360
     aagaactaaa ggaaatagaa aatatggtta gggaagttat taaaaaaaat ggacttacca      3420
     ttaacgaaga aaaatcgtgt tatggtcagg aaaaagtgaa tttcttagga ttaacactag      3480
     atggagaagg aatattaccg atgagggaaa aaatgacagc cattcaaaat tttgacagac      3540
     ctaaggacgc aggtgaactt agaagttttt taggaatgtt gacttttatt ggcccattta      3600
     tcagagactt ttcacataaa actaagccgt tgagggattt gataaaaaga gataaattta      3660
     aatgggaaga gatgcatcaa aatacgtttg aagaattgaa aaaggttgct atggaagacc      3720
     ttatcaaaag gggttatttc aatgaaaagg ataggatcat actatatact gatgcatcac      3780
     cttggggctt gggagcaatt ttagcccaag aaaaattgag cacgtccgaa atgcgtatta      3840
     tcgcatgtgc atccaaagga ttgacggaga cggaaagccg ctatccgcaa ctgcataggg      3900
     aggctttggc catagtttgg gctatggaac gatttgctta ctatctatta ggaaggaaat      3960
     ttttgttgcg atcagatagt gaagcgttga aatttatgat taaaccggct aaacaaaaag      4020
     atataggaaa gaggattatg tccagggcag aaggatggtt catcagactg gaccattatg      4080
     attttgattt cgaacacgtt ccgggaaacg agaacatagc cgatactgcg tctaggctgt      4140
     gcagatctaa agaggattac caatttgggg ttgctaagga gcctcacgaa ctatgtttgg      4200
     ttactgcgtg cgtaaaccag gttaatgaaa cactattggc gttaaccacg gaagaagtag      4260
     gaaaggaatt agaaaaagat gttatattaa acaaggttat tgcttggtta gataaagaga      4320
     atgaatggcc acaagaaatt gcaaggtata aagcgtttca gagggagctg tatgtggaaa      4380
     acggtttcct atttaaacaa gaaaagatgg tcctcccgca tatacttagg aaccgagcgt      4440
     taacattagc tcatagaagc caccctggca tgtccacgat gaaaaatgtt ctgagaacgg      4500
     gactttggtg gcccggtatg gacaaagaga ttgaagcttt tgttagaagc tgcccagaat      4560
     gtcagctagt gaaaacgaca aatacggcgg tacctataga attaacggag ctaccggaga      4620
     atccatggga ttatgtgtca atggatattt catctaccac agataatgtt aaaacattgg      4680
     tgcttacaga taattactcg cgatttctga tagccgtccc tctagagcga acggatgcga      4740
     atagtataca aaaagcattg aacaggatat ttttaacata ctatgtacct aagaaattaa      4800
     aagcagataa tggacccccg tttaatgcgg tagatttcaa aagatggtta gcagacgtat      4860
     gggggataaa actcataaat agcacgcctc taaatcctac cgaaaatggg ttagttgagc      4920
     gtggaatgca aggtataaat aagattgcag ccattgcacg gttagaaaaa aaatgctgga      4980
     aacaggccct tgcggaatat gtagcggatt ataactcatg gccgcaccat gtaactaaaa      5040
     tagcaccagc cgaactaatg tttggtagag ctattaggca taggttacca aacccaaaaa      5100
     cggatactag acaagcgaac gatgatgaat tacgagacag ggataaaatg gcgaaatttc      5160
     agcgcaatca aagagaggat acaaggcgtg gagctaggcc tcttagcatt aaacctgggg      5220
     atacggtttt agttagaaat caaaaagcag ataagacaga ctcatcgtac aaaaaagaat      5280
     tgcatgaggt acttaaaatt tgtggtgctg gcagggtaac ggtgaaggaa aaaaaatcag      5340
     gaaaaattta cgatcgtaat gtaaagcaca taaaaaaatt tttcatgcga aaagcggaag      5400
     aagggttgac aagtggtagt agtagttcgg aggaagtagc agggctagtg aaagaacgac      5460
     aggctaggct gattaaaaaa ccaaaacgat taatcgaata ttaaagaatt tgtagcctta      5520
     ttcctcaagg ggagga                                                      5536
//
ID   GYPSY68-LTR_AG repbase;    DNA;    INV; 108 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY68-LTR_AG is an LTR of retrotransposon GYPSY68_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY68_AG; GYPSY68-I_AG; GYPSY68-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-108
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY68_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 176-176 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY68-LTR is a long terminal repeat of GYPSY68_AG (its
CC   internal portion is deposited as GYPSY68-I_AG).
XX
SQ   Sequence 108 BP; 25 A; 12 C; 41 G; 30 T; 0 other;
     tgtggtatgt gagagtagca gtgtgggtgt gcgggcagta ggaggttgga cggaataaag        60
     agcagacgtg tgttactgta gttccggtgt tttcgatgga atatcaca                    108
//
ID   GYPSY69-I_AG repbase;    DNA;    INV; 4642 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY69-I_AG is an internal portion of retrotransposon GYPSY69_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag;
KW   AP protease; GYPSY69-I_AG; GYPSY69-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY69_AG; mag lineage; reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4642
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY69_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 177-177 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY69_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, is phylogenetically grouped with
CC   representatives of the mag lineage of other organisms.
CC   GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG,
CC   GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG,
CC   GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG and GYPSY68_AG, are other
CC   members of this same lineage in Anopheles gambiae. The
CC   GYPSY69-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 351-aa
CC   GYPSY69_AG1p gag-like polyprotein (pos. 201-1253) and the
CC   1166?aa GYPSY69_AG2p pol-like polyprotein (pos. 1853-4621).
CC   The sequence of the LTRs flanking GYPSY69-I_AG is deposited as
CC   GYPSY69-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..1253
FT                 /product="GYPSY69_AG1p"
FT                 /translation="MQNRENTTLSSSMNTLSAVSINIPECKPITNTEEIDR
FT                 KSFKDWKDLLEASMDLAGITDEYTKNNVFKVKAGPMLLEVLDSTPKQPLSE
FT                 TSNAPYSNAMKRLNDFFGSREYRLVQRQKLRALTQDAEESDLKYLKRVIAT
FT                 AKLCDFDEEKLMEGVTEVIQLHALNAKVREAGRKVLRKGGTLAALVDKIRG
FT                 YEVDKTNEEIFKRTHQPASDFRIAAVARSGVESNSAAGSGTEPRGRNFDYQ
FT                 GQSSWRNFGNPSNKYGRNNSRYENKVVPCWRCSSIFHVPSKCHAANKICRN
FT                 CKKTGHIERACRQIPTPSNTLKRRISRDDERPVNTKKIATVTKDEEQKEDT
FT                 NVVSDYSS"
FT   CDS           1853..4621
FT                 /product="GYPSY69_AG2p"
FT                 /translation="MLAVTVEDEFPKFNIPPVVLSYDITKPPSRRIFTNIP
FT                 LPFREETQRRLQNLLATGIIEVVTDSMDRSFCSSLLVVPKGKDDIRLVVDL
FT                 RGPNKCIIRTPFRMPTLEEILSDLHGAKWFSTIDLTSAFFHIEIAEQSRHL
FT                 TNFFGGNATYRFKRLPFGLCNAPDIFQETLQTKILSGCHGQKCYLDDILVH
FT                 GHTKEEHDSNLKAVLHQLKAHNVRINTNKCVLGKNKVKFVGYLISDEGLCV
FT                 ENEKLKAVQNFRRPETINEVKSFLGFMNFSERFIYMRADKTKYLREVAKSE
FT                 VFYWSAAEESEFNFLKNEALKSIATLGYFSSKDDTELYVDASPVGLGAVLV
FT                 QFDVECKPRIIACASKALTSTEQRYPQTQREALAIVWGVERFTFYLTGKSF
FT                 AIRTDSEANEFIFGESYRQSKRAVTRAEAWALRLQTYDFTVKRIPGHLNVA
FT                 DALSRLIAQTQEAEPFDQDDDKHLLYTLGGGIVSITWKDIEQESENDPELV
FT                 AVRTASKSGRWPDNLRRYEAERRSIRSLGSIVFKDDKIITPTKLRSQIMLT
FT                 AHQGHIGVSAMKRIMREYFWWPNMSKDVEVFVKNCNTCLVIARKNPPVPLT
FT                 NRTLPDGPWQVLQIDFLSIPGCGAGEFLVVVDTYSRYLAVIEMHSTDAKTT
FT                 ILALSRIFFTWGLPLTIQSDNGPPFQSNEFITYWEEKGVKINKSIPLNPQS
FT                 NGAVERQNQGIIKALAGAKQDGNNWKDALSAYVHVHNNMKPHSRLGVTPFE
FT                 LLVGWRYRGFFPSLWESKVTKEIDRSNVREQDNLSKLVSKTYADTRRGAKD
FT                 SDITVGDKVLLSFPKKNKTDSTFSSDSYTVLVREGSKVVVQNDRGVQYTRN
FT                 VGDCKKASQRTQLIEEIGPNSTSLSTQKDSEKESEHPSEDRSRRSPIKRSQ
FT                 RAVRKPEKLKDMFLYRIYS"
XX
SQ   Sequence 4642 BP; 1559 A; 895 C; 1022 G; 1166 T; 0 other;
     atggcgcaaa ccacgctccc aaatttaaat caaagaaagt gagcatatta cgcaatgctc        60
     ttaaggcgga gaaaaggcgg aacctcttac ttgcggctaa gctgaagtac caaaataaag       120
     ctagagcaaa acatttacga gaaataaagc agttcaaagc cgacattgtc aaagaggcga       180
     ttcattcaac ggcgatcgat atgcaaaatc gtgaaaacac caccctttct tcctccatga       240
     acacactttc ggctgtttct ataaatattc cggagtgtaa accaatcact aatacggaag       300
     aaatcgatcg caaatccttc aaagattgga aagatttgtt agaagcatct atggacctcg       360
     ccggtatcac tgatgagtat accaaaaata atgtttttaa agtaaaggca ggacctatgc       420
     tgctagaggt cctagactcg actccaaaac agccattatc tgagacgtca aacgccccat       480
     attcaaacgc tatgaagcga ctgaacgact ttttcggttc tcgagaatat cgcttggtgc       540
     agcggcaaaa gttaagagca ttgacgcagg acgcggagga gtcggactta aaatatctta       600
     agcgagtgat agccacagct aaattgtgcg attttgacga agaaaaacta atggaaggcg       660
     tgacagaagt tatacaacta catgcgctca acgccaaagt gcgagaggca ggtagaaagg       720
     ttctacgcaa aggaggtacc ctagcagctc tggtggacaa aattcgagga tacgaagtgg       780
     ataagacaaa cgaggaaatt ttcaagagga cacatcagcc agcatcggac ttcagaatag       840
     cggcggttgc acgaagcgga gtcgaatcga attccgctgc tggatccgga acggaaccgc       900
     ggggaaggaa cttcgattac caaggacaat ccagctggag gaattttggg aatcccagca       960
     ataaatacgg acgaaataat tcaagatacg aaaataaggt cgtaccctgc tggagatgct      1020
     ccagtatatt tcatgtacca tctaagtgtc atgcagcaaa taagatctgc cgaaactgta      1080
     agaaaacggg tcacattgaa cgtgcttgcc gacaaatacc gacaccatca aacacactga      1140
     aacgtcggat cagtcgggac gatgaaagac ccgtcaatac aaagaaaatc gccacagtga      1200
     cgaaagatga ggagcaaaaa gaagacacga acgtcgtaag tgactattcc tcataattca      1260
     gcttacccga ttgaattttt atctgcccat gttgtgaatt tgataaacca tattttatct      1320
     gaaggaataa ataggagtga actaaaaaaa aaaaaaaaaa agtaaaaaca ttaacattaa      1380
     tgactattat atttttcaga ttaattaacg gttctcgatt gaaataaacg agttgcatga      1440
     cttggatatc caaagaggat gtatcttagg acgcattgca aataacattt ccgtgttatt      1500
     tttgatagac tccggagcgg acgtcaatac tgtggacgaa gacacttttg ataagttgcg      1560
     taacaatgaa caatccagag agcaactata ttgcgtttca aatgatacag ataaaccact      1620
     ccgtgcgtac gccagtccgg gtgagatcaa agtcgtaggc acttttgtag cagaattgta      1680
     catttcagaa gaaagaccat gtctttttga aaaattttat gttattaaag gcgctaaacc      1740
     actgttgggt agagaaacat ctctgagata cagtgttttg caaatagggc tcgatgtgac      1800
     aattaactgt gcaagttctg gcaaatatta ccccgataaa tttccaggag aaatgctcgc      1860
     agtaacagtg gaagacgaat tccccaaatt taatatccct ccggttgtct tatcttacga      1920
     catcaccaaa ccaccatcac gtcgtatatt tactaacatc cctttaccat ttcgcgagga      1980
     gacccaacgt agactgcaaa accttttagc aactggaatt atagaggttg tcacagactc      2040
     aatggataga tcattttgct cgtcattact ggtcgttcca aaagggaaag atgatattcg      2100
     cttagtagta gacctaagag ggcccaacaa atgcattatt cgcacaccat tcaggatgcc      2160
     aactttggag gagattctct ccgaccttca cggcgccaaa tggttctcca ctatcgacct      2220
     tactagtgca ttttttcata tagaaatagc ggaacaatct cggcacctaa ctaatttttt      2280
     cggaggaaac gctacgtatc gttttaaacg actaccattt ggtctttgca atgctccaga      2340
     catatttcaa gagacattac aaactaaaat attatccggg tgtcatggcc aaaaatgtta      2400
     cttagacgac attttagtac acgggcatac aaaagaggaa cacgatagta atcttaaagc      2460
     ggttcttcat caacttaaag ctcataacgt gcgcattaat actaacaaat gcgtgcttgg      2520
     taagaacaaa gttaaattcg ttggttatct tatatcagat gagggattat gcgttgaaaa      2580
     cgaaaaatta aaagcagtcc agaacttccg tcgtccagaa accataaacg aagtaaaaag      2640
     ttttttgggg tttatgaatt tctcggaacg gtttatttac atgcgcgcgg ataaaactaa      2700
     gtatttgaga gaagtagcta aatctgaagt tttttattgg tccgccgcgg aagaatctga      2760
     gtttaacttt ctaaaaaacg aagctttaaa atctatagct acgttaggtt attttagttc      2820
     caaggatgat actgaattgt acgttgacgc gtctcccgtg ggccttggtg cagtattggt      2880
     acagttcgat gtggaatgta agccacggat aatagcatgt gcttcaaaag cattaactag      2940
     tacagaacag agatacccac agacacagcg agaagcgcta gcgatcgtgt ggggagtaga      3000
     aaggtttact ttctatttga caggtaaatc attcgccatc cgcacagatt ccgaagctaa      3060
     tgagttcatt tttggtgaga gctatagaca aagtaaacgg gcagttacac gggctgaggc      3120
     ttgggctcta agactacaaa cctatgactt tactgtaaag cggatcccag gtcatttaaa      3180
     tgttgcagat gctctatcaa ggttgattgc tcaaacacaa gaagcagaac cttttgatca      3240
     agatgatgat aaacatctac tatacacact tggcggggga attgtgagta tcacgtggaa      3300
     ggacatcgaa caagagtcgg aaaatgaccc agagctcgta gcggtgagaa cagctagtaa      3360
     atcgggtcgc tggccagata acctacgtag atatgaagca gaacgcagat caattcgttc      3420
     gttagggtca atagttttca aggacgataa aattattacc ccaactaaac tgagatcaca      3480
     gattatgttg accgctcatc aaggacacat aggtgtttct gcaatgaagc gtataatgag      3540
     ggaatatttt tggtggccaa acatgagcaa agacgttgag gtgtttgtga aaaattgcaa      3600
     cacgtgttta gttattgcaa gaaaaaatcc accagtgccc ttgactaatc gcactttgcc      3660
     ggatggacca tggcaagtgc tacaaataga ttttctatcc ataccaggtt gcggggctgg      3720
     agagtttttg gttgtggtcg atacctattc tagatattta gccgttatcg aaatgcatag      3780
     tacagacgca aaaactacta ttttagcact aagtagaatt ttctttacct ggggattgcc      3840
     actaaccatt cagagtgaca atggccctcc tttccagagc aatgagttta ttacgtactg      3900
     ggaggaaaaa ggcgtaaaaa ttaataagtc aataccctta aaccctcagt caaatggggc      3960
     tgtcgaaaga cagaatcaag gtattatcaa agctttagct ggagccaagc aagatggaaa      4020
     taattggaaa gacgccctta gtgcttacgt tcatgtacat aataacatga aaccacattc      4080
     cagactggga gtaactccgt tcgaattatt ggtaggatgg cggtatagag gtttcttccc      4140
     aagtctgtgg gaatcaaagg taacaaaaga gatagataga tctaacgtac gcgagcagga      4200
     taatctttcc aaattagtaa gcaaaactta cgcagatact cgtcgaggag cgaaggattc      4260
     ggatataact gtaggagaca aggtcctact ctcatttcct aagaaaaaca agacagatag      4320
     tacattttcc tctgactcat acacagtgtt agttagagaa ggatcaaagg ttgttgttca      4380
     gaacgatcga ggagttcaat atacccgcaa cgtgggggat tgtaaaaaag cgtcgcaaag      4440
     aacgcagtta atagaagaaa taggacctaa tagcacatca ttgtcgactc agaaggattc      4500
     cgaaaaggag tcagaacatc cttcggaaga taggtcaagg agaagtccaa ttaagcgatc      4560
     acaaagagca gtgagaaagc ctgaaaaact aaaggatatg tttttatatc gaatttatag      4620
     ctagagtagg agaggaggcg aa                                               4642
//
ID   GYPSY69-LTR_AG repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY69-LTR_AG is an LTR of retrotransposon GYPSY69_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   5-bp TSD GYPSY69_AG; GYPSY69-I_AG; GYPSY69-LTR_AG; Gypsy clade;
KW   mag lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-441
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY69_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 178-178 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY69-LTR is a long terminal repeat of GYPSY69_AG (its
CC   internal portion is deposited as GYPSY69-I_AG).
XX
SQ   Sequence 441 BP; 185 A; 58 C; 113 G; 85 T; 0 other;
     tgtagagaat aatagtaata ataataacaa taataataat ttagaaatta aatttaaaat        60
     aaaatgattg ttaccattaa agtgaagctt agaattgatc gcgagaggga aaggaaaaga       120
     gagaaatagc gatagaacga gaagcgtatc gacaagtgag agactcgcgg cttgccgaca       180
     agtgaacgtg agagactgca cggtgagatg ctacacggtg agaagagttc aacatagaaa       240
     cgcgttttca agagaggagc aactcggtga gatcgcatgt gagagcggca ggatggaaac       300
     gaaacgcgaa aaggcgatca gtttttggac agacgtagaa aagacaagtc gcaataaaaa       360
     gagtgtccca gcagtaaaaa aaaaaaaaaa aaagtgttaa aatgtataac atcaatgatg       420
     acaagggctg cggttacgac a                                                 441
//
ID   GYPSY6A_LTR repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   23-MAR-2001 (Rel. 6.02, Created)
DT   23-MAR-2001 (Rel. 6.02, Last updated, Version 1)
XX
DE   GYPSY6A_LTR is a long terminal repeat of the GYPSY6A endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY6A_I; GYPSY6A_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-420
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY6A_LTR.";
RL   Direct Submission to Repbase Update (MAR-2001).
XX
DR   [1] (Consensus)
XX
CC   GYPSY6A_LTR is a long terminal repeat of the GYPSY6A endogenous
CC   retrovirus. There are ~20 copies of GYPSY6A_LTR in the genome,
CC   they are ~93% identical to the consensus sequence.
CC   There is 78% identity between GYPSY6A_LTR (positions 56-208) and
CC   GYPSY6_LTR (59-198).
XX
SQ   Sequence 420 BP; 128 A; 103 C; 90 G; 99 T; 0 other;
     agttaacaca agccaacgaa ctagaacagt tggctcagtg catgaaacat aatatcaaag        60
     tgctgaccca gcattgggcc ggaaacccgt gcgcagccgg caaacacagc atatttgcgt       120
     ggccgctgcg agtctttgtt agctataaga atcattttaa gtttcagttt gaatttgcat       180
     ttaccagaat aaagagcggc agctcgtcaa ctccgactaa gcgtcgtaaa acatattttt       240
     attacttact ctgccagacc acaaggctgg cagttaaaag aggaaagttc ctctcaacgt       300
     aaataataat cttctgctcc ccggactccc cggagcagcc agcgaaggaa gcccttcacc       360
     tctggaggaa tcctgacgac gacagtatcg caagacggtg cgatcaatct ttaaataatt       420
//
ID   GYPSY6S_A-I repbase;    DNA;    INV; 6798 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY6S_A-I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6798
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           810..2024
FT                 /product="GYPSY6S_A-I_1p"
FT                 /translation="MCSPFTQYRENKLSDSDSDSEGPPRIFIPIRAPTNPP
FT                 SGRTMDSDQLKAVIQTAVNRALAEAAGEARRREEEMRQVIQQLATQVAAVQ
FT                 IAPTQAAAPIIKVYQPIDITGNVECSEPLDAVKCLPEFTGAQETYVSWRQA
FT                 AVAAYYIFRNYVNSSRHYQAVVIIRSKIRGPADAVLSSFGTVLNFDAIIDR
FT                 LDFTYSDKRAIHVIEQETGTLRQGSLTLLQYYDEVEKKLTLLTNKATSEVE
FT                 SNHERYTFATSFAKSLEDSDRMQYPMAQERQQTPYQAHSQVSGGKNPHFIK
FT                 QVKAQVHSAPHNDRRRENTSEPMEVDPSMSRLRQPTQAQAYQNGKPAHSGR
FT                 SHPHKRQRVNHIAQTIGQAEGTYATTASSAAAKVDDDTISEYDLEVINFLG
FT                 ENPCCPSSDEE"
FT   CDS           2039..5077
FT                 /product="GYPSY6S_A-I_2p"
FT                 /translation="MKFLIDTGASKNFIRPHKGLKGVRPVDSPFTIHSLHG
FT                 VTTITKKCFVSLFDLKATFFILPDLSSFDAIIGLDLLKQAGASLCLASGHL
FT                 RWGNGEEKIEFHPCPDVNFTEVDCSDAPPLVRNAFLEMLKTRKKAFANPNE
FT                 DLPYNTSVVATIRTVSEEPIYAKLYPYPMGAADFVNKEIEDLLKNGIIQKS
FT                 VSPYNNPIWVVDKKGTDDHGNRKMRLVIDFRKLNERTVPDKYPMPNINMIL
FT                 SNLGNAKYFSTLDLKSGYHQIILAERDREKTSFSVNGGKYEFRRLPFGLKN
FT                 AGSIFQRTIDDILREQIGKFCYVYVDDVIIYSEDENSHIKHVDWVLKSLHD
FT                 ANMRVSVEKSSFFKKSVSFLGLIVTCNGATTDPEKVKAIKEFPEPKSVFEV
FT                 RSFLGLASYYRCFIKDFAAIARPISDILKGENGTVSRHRSRNIPVQFSETQ
FT                 QQAFQKLRNILASDDVMLRYPDYKKAFDLTTDASAHGIGAVLSQEGRPITM
FT                 ISRTLKDREVNYATNERELLAIVWALAKLRHYLYAVKDINIFTDHQPLTFA
FT                 VSESNPNAKIKRWKARIDESGARIFYKPGKENLVVDALSRQQINVMEEQEA
FT                 QSCVATVHSELSLTHTIETTDKPLNCFQNQITLEEARFPLKRSFVLFGNKR
FT                 RHAINFPCKESLIDELADVIVPKGVNAIHCDLHTLALIQDELVRRFPATKF
FT                 WHCKNRVTDIFAVPERREILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLA
FT                 TEIVANCKTCAKGKYDRHPKKHELGETPIPSHVGELLHIDIFSTDKKYFLT
FT                 CIDKFSKFAIVQHVHSRTIEDLKPAILQIMNFFPRAGVVYCDYEPSLNSHT
FT                 ISTMLDNHFGVSIANAPPLHSVSNGQVERFHSTLLELARCLKIDKGITDTV
FT                 EIILLATAKYNESIHSVVDKRPVDIVQEHPDDPQTEVRNRIIKAQNTLRTR
FT                 ENASRQHRVFEVGEKVLVKSNRRLGNKLTPLCEEKAVEADLGTTVLIKGRV
FT                 VHKDNLK"
FT   CDS           5336..6796
FT                 /product="GYPSY6S_A-I_3p"
FT                 /translation="FHRIGPTFCILLSLASAHVTDYSQARYIPVIDGEILV
FT                 WEEFAYVTHTANLSEYGRVIEETTNMIDIFPLSHMKKLLSVDTAHLQDLLE
FT                 SLGVHHRVARSLDFLGSMLKVVAGTPDASDLEKIKFTEMRLVESSNRQIQI
FT                 NTKTQNQINQLTSTVNSILRSAKTSQIDTGHLYETLLARNRMLMAELQNLM
FT                 LAITLARIIIVSPNILDHEDLETVWLEEPTDTPIGDLLSVSSVKILQSRNI
FT                 LHFIIKFPKIKLACKKITIFPVAHGGTMLQIIDNIIAECSGEVYAIKNCSE
FT                 SPRATFCRLASESSCAKELHAGGVAHCRVQESDLHPITYVDEGIIIINDRS
FT                 AKVRVDNGTEIWTHGTHLITFDKQAIINDTLFINHNNTQKRAPGTASLPLL
FT                 NITATQDVLSLPYLHRLSERNLEFIKGFKEEIENQRTRLVAIIAGAICCAL
FT                 ICIGLIFRRFTEARKSAGQVRQIIAELQTAEGGLNSERGVVN"
XX
SQ   Sequence 6798 BP; 2041 A; 1642 C; 1489 G; 1626 T; 0 other;
     ggcgcccaac tagcgggaaa tacccacccg cccacatcat acagaacatg taagtgggcc        60
     cgctggtcaa accttttaag tcttcgacac aaaccatagt ttcagaccag tgttaaaaca       120
     ttaaaaatac gaaaaaacca gtctgaagag tgtttttaaa atctcaatac tgaatgtgac       180
     ggctagtagg tgttggtgtt tattttcact gcgaaaaaaa tttaactaac atcataatcc       240
     gttgcaaata cggcaaaaac aaaaaaaaaa taatttaatt taattcgctc acagttgtgt       300
     tacggcgcat tgctatttcg ccgagcagtt aaattttttt cgcatcgtgt acccaacaga       360
     cattatatgc tgttacactg caaatatttt tggtgaggaa attaacatat tgcgggggct       420
     aaatatcaga tccaaggctc tcacagttta atacaccaga ttttaatttt tatttgacat       480
     ttaattcagt tttgtatatc acatcgctcg agtagaaatt ttgtatcttt attgtcccca       540
     ctccaccgct gtgaacccga tacggccgcg catgcatttg tatttcaatt atttattctt       600
     cgcttctttg tttatcgtgg cggaggctca gtccccgcgc acctctcacc gtaccagtgt       660
     tggcacttgg aaaggcggca actgggctca cacacatagt tgttaaggcg gcggctccgt       720
     ctccgcgtac ttcttgcatt gccagctgcc ttcgtgggca aaatagctga gcgggcattg       780
     cataccagtg cagtttaact taagcacata tgtgctcccc gtttacacaa tatagggaaa       840
     ataaacttag cgactcagat tctgacagtg aagggccccc gcgtattttc atcccaatac       900
     gggcacccac caacccccct tcaggtagaa ctatggactc agatcagctt aaggctgtga       960
     ttcagaccgc cgttaatcgt gccttggcag aagcggccgg tgaagccagg cgtagagaag      1020
     aagaaatgcg ccaagttata caacagttgg ctacccaagt tgcagcggtg caaatcgcac      1080
     ccacacaagc ggcagcccct ataatcaaag tataccaacc cattgatatc acgggcaacg      1140
     tcgagtgcag cgagcctctg gatgccgtaa aatgcttgcc cgaatttacg ggagcacaag      1200
     agacatatgt ctcctggcgg caggcggcgg tagccgcata ttacatattt aggaattatg      1260
     taaatagctc acgccactac caggcggtcg ttataatcag aagtaaaata agaggccccg      1320
     ccgatgcggt gctatcttcg ttcggcactg tattgaattt cgatgcgatc atagatcgcc      1380
     tcgatttcac atatagtgac aaacgcgcga ttcacgtcat cgagcaggaa acgggcaccc      1440
     tcagacaggg aagcctgact ctattacaat actacgacga ggtcgagaaa aagctcacct      1500
     tgcttaccaa taaggccacc agtgaagtgg aatcaaacca cgaaaggtac accttcgcaa      1560
     catcgtttgc aaaaagcctg gaggatagtg ataggatgca atacccaatg gcgcaagaac      1620
     gccaacaaac gccctaccaa gcgcactccc aagtaagcgg gggaaaaaac ccacacttta      1680
     ttaaacaggt taaggctcag gtacactcgg ctccgcataa cgacaggcgt cgtgaaaaca      1740
     catcagaacc catggaggtt gacccgtcta tgtccaggtt gagacaaccc actcaggcac      1800
     aggcctacca aaacgggaag cccgcccact ccggtcgttc acaccctcac aagagacaga      1860
     gggttaatca catcgctcag accataggtc aggccgaagg cacgtacgca accacagcgt      1920
     ccagcgcggc ggccaaagtg gatgacgaca ccatttctga atatgattta gaagtgatta      1980
     attttttagg ggaaaatccc tgctgcccgt catcagacga agagtagcgg ggaaagagat      2040
     gaagttcctc atcgacacgg gtgcgtcaaa aaattttatc cggcctcaca aaggcttaaa      2100
     aggcgttcgc cccgtcgatt ccccattcac catccattca ctccatggcg ttaccacgat      2160
     cacgaaaaaa tgcttcgtgt cactttttga tttgaaggcc acgttcttca ttttacctga      2220
     tttgtcttcc tttgacgcga taattggcct cgacctactt aaacaggcag gggcatcgct      2280
     ttgtctggcc tctggccacc tcagatgggg caatggagaa gagaaaattg aattccaccc      2340
     atgccccgac gtcaatttta ccgaagtgga ctgctcagat gcgccaccct tggtcagaaa      2400
     cgcgttctta gaaatgctga agactaggaa gaaggctttt gcaaacccta acgaggattt      2460
     gccctataac acatcggtgg tagctaccat ccgaacagtt agtgaggagc ccatatacgc      2520
     aaagttatac ccgtacccaa tgggggcggc ggacttcgtc aataaagaga ttgaagacct      2580
     gcttaaaaac gggataattc agaagtcggt atccccttac aacaacccga tatgggttgt      2640
     agataagaaa gggaccgatg accatggcaa ccggaaaatg agactagtta tcgacttccg      2700
     caagctaaac gaaagaacag tgcccgataa ataccccatg ccaaatatta acatgatatt      2760
     gagcaaccta ggcaatgcga agtatttctc cacgctggac ctcaagtctg gctatcacca      2820
     aatcattctt gcagaacgcg acagggaaaa aacctctttt tctgtgaatg ggggaaaata      2880
     cgaatttcgc agattaccgt ttggcctcaa aaatgcaggt agcattttcc agaggacaat      2940
     cgatgacatc ctacgggaac aaatcggcaa gttctgctat gtttacgttg acgacgtaat      3000
     tatctactcc gaagacgaaa actctcacat caagcacgta gattgggttc taaagagcct      3060
     gcacgatgcg aacatgagag tatcggtaga aaagtccagc ttttttaaga aaagtgtgag      3120
     cttccttggg cttatagtca cttgtaacgg tgctacaaca gacccagaaa aggttaaggc      3180
     tataaaagaa tttccggaac ccaaaagtgt ttttgaggta cggtcatttc taggcctagc      3240
     cagctactat agatgtttta ttaaggactt cgcggcaata gcaaggccta tatcagacat      3300
     cctaaaaggg gaaaacggaa cagttagtag acacaggtca cgaaacattc cggttcagtt      3360
     ctcggagacg cagcaacaag cgttccagaa actacgaaac atcttggcat ccgacgacgt      3420
     gatgctaagg taccccgact acaaaaaggc atttgatcta acgacagatg cctcggccca      3480
     tggcattggc gcagtattgt cccaagaggg acgcccaata acaatgatct caaggacatt      3540
     gaaggacagg gaggttaact acgccaccaa tgagagggaa ctcttagcca tagtctgggc      3600
     tttggccaag ctacggcatt acctgtatgc ggttaaagac atcaacatct ttaccgacca      3660
     ccagccgcta acctttgcag tatcagaatc caatccgaat gcaaagatta aaaggtggaa      3720
     agcgcgcatt gatgaatcag gagcgcgtat tttctacaaa cccggcaaag aaaacttggt      3780
     cgtcgatgca ttgtcacggc aacaaattaa cgtcatggag gagcaagaag ctcaatcgtg      3840
     cgtggccact gttcacagcg aactctcctt gacgcacact atcgaaacga cggataagcc      3900
     cctaaactgt tttcagaacc agataactct ggaggaggca cgctttccgt taaagcgcag      3960
     cttcgtcctc tttggaaaca agaggcggca tgcgattaac ttcccctgca aagagtcatt      4020
     gattgatgaa ctcgcagatg taatcgttcc gaagggcgta aacgccattc attgtgacct      4080
     gcacacgctg gcactaatac aggacgagtt ggttcggaga tttccagcca ccaaattttg      4140
     gcactgcaaa aaccgtgtaa cggatatttt tgcagtccct gaaagacggg aaattcttac      4200
     cgtagaacac aatagggccc acaggtcggc ccaagaaaac gttaagcagg tactctccga      4260
     gtactacttt ccgaagatga ccaagttggc taccgaaatc gtagcaaact gcaaaacatg      4320
     cgcaaaaggc aaatacgata ggcacccaaa aaaacatgag ctaggcgaga ctccaatccc      4380
     ctctcatgtg ggagaactac tacacatcga cattttttct acggataaaa agtattttct      4440
     aacttgcatt gacaagtttt cgaagttcgc aattgtgcaa catgtccact ctaggacaat      4500
     cgaagacctt aaaccggcca tactacagat tatgaatttc ttccctaggg ctggagtagt      4560
     ttactgcgat tatgaacctt cattaaattc gcatactatc tcgaccatgc ttgacaatca      4620
     ctttggcgtt agcattgcca atgcaccgcc actccatagc gtgtcaaatg ggcaagtgga      4680
     gcgctttcat agcacccttt tggagcttgc tcgttgccta aaaatcgaca agggcataac      4740
     cgatactgtg gaaattattt tgttggcaac cgccaagtat aatgagtcaa ttcactccgt      4800
     cgttgacaaa cgaccagttg acatcgtgca ggagcaccca gatgacccac agacggaagt      4860
     ccggaacaga atcattaagg cacaaaacac gctcaggacc agggaaaacg cctcccgaca      4920
     acacagagta ttcgaagtcg gcgagaaggt attggttaaa tccaatagaa ggctgggaaa      4980
     taaactcaca cccttgtgcg aggagaaagc cgtagaagcg gacctgggga ccacggtcct      5040
     cattaagggg agggtggtcc acaaggacaa tcttaaatga tatgaccaac aatgtccttt      5100
     atggtttttt ttattattca ttttttatat tcatttttat attatatttt tttatcacac      5160
     cttcaagcca tttggcgcac cttatttttt atattcacta gttattacac cttcaagccg      5220
     cttggcgcac tttgtttttt actataggtt cgtagctact ggcatagttt gttttaagtt      5280
     cattttatcg gtggtgggaa aaccctctat aagcataaaa atagctaaag cttaatttca      5340
     caggatcgga ccaacatttt gcatactcct gtccttggcg tcggcccacg ttaccgatta      5400
     ttcacaggcc aggtacatcc ccgttataga tggcgaaatc ctagtatggg aggagtttgc      5460
     ttacgtcacg cacacagcaa acctctcaga atatgggcgt gtaatagagg agacaaccaa      5520
     catgatagac atatttccgc tatcccatat gaagaagctt ctgagcgtgg ataccgccca      5580
     cctccaggac ttgttagagt cgttgggcgt tcatcacaga gtagctagga gcttggattt      5640
     cttaggatct atgctaaagg ttgtagcagg gacaccagat gccagcgact tagaaaaaat      5700
     caagtttacc gaaatgaggt tagtcgagtc tagcaataga cagatccaaa ttaacaccaa      5760
     aacccaaaat caaattaatc aacttacctc taccgtcaat tcaattttga gatcagccaa      5820
     aacctcacaa atagacactg gacacttata tgaaacactg cttgctagaa accgcatgtt      5880
     gatggcggaa ttacaaaatt taatgcttgc aataacccta gccaggatta tcattgttag      5940
     tccgaacatt ttagatcacg aagacttaga aacagtttgg cttgaggaac ccaccgacac      6000
     acctatagga gatcttttgt ccgtctcgtc tgtaaagatt ttacagtccc gtaacatttt      6060
     acactttatc attaaattcc ccaaaattaa attggcctgc aagaagatca ctattttccc      6120
     agttgcccat ggtggaacga tgttgcagat catagacaat atcatagccg aatgcagcgg      6180
     agaagtttac gccatcaaaa actgctccga atcaccgaga gccacattct gccgcctagc      6240
     ttcagagagt tcgtgcgcca aagaactgca cgccggtggg gtagcacact gccgagtaca      6300
     agagagtgac ctgcatccga taacctacgt agacgaagga attattatca tcaacgatag      6360
     gtcggccaaa gtgcgagtgg acaacggcac agaaatctgg actcatggca cacacctcat      6420
     aacctttgac aaacaggcca tcataaatga cacactcttc atcaaccaca acaacactca      6480
     gaagagagcc ccagggacag caagtcttcc cttgttgaac atcaccgcca cccaagatgt      6540
     cctcagcctc ccgtatcttc accgtctgag tgaacgaaac ttggagttca ttaaggggtt      6600
     caaagaagag attgagaacc aaagaacacg tctcgtagca attattgcag gagcaatatg      6660
     ctgcgcactc atctgcatcg ggcttatttt taggcgtttc actgaggcaa gaaaatccgc      6720
     aggccaagtt aggcagatta tcgctgaact acagacggcc gagggcggcc ttaattctga      6780
     gaggggagta gttaacta                                                    6798
//
ID   GYPSY6S_A-LTR repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY6S_A-LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-407
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 407 BP; 111 A; 107 C; 93 G; 96 T; 0 other;
     agttaaccgg gcgacggcta cgaccgatcg tccgaagact cgctccggcc aaattgctga        60
     cacagcgtct ggccggaagc ccgtgcatag ctggcaaaca ctacccgttg gagtggccgc       120
     tatgagtttc atattttgtt agccttaagt tcagtttgaa tttgcattta tcagaataaa       180
     gagcggcagc tcatcaactc cgactaagcg tcgtaaaata cattcttatt acttactctg       240
     ccagaccaca aggctggcag ttaaaagggg aaagttcctc tcaacgtaaa aaatacactt       300
     ctgctccccg gactccacgg agcagccagc gaaggaagcc cttcacctct ggaggaatcc       360
     tgacgacgac aatatcgcaa gacggtgcga tctatcttta gttaatt                     407
//
ID   GYPSY6S_B   repbase;    DNA;    INV; 7732 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY6S_B;
KW   Phidippo.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7732
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs(1-416, and
CC   7317-7732). 3 amino acids of ORF3 overlap the 3'-LTR.
XX
SQ   Sequence 7732 BP; 2289 A; 1887 C; 1707 G; 1849 T; 0 other;
     agttaactaa gttaaccggg cgacggctac gaccgatcgt ccgaagactc gctccggcca        60
     aattgctgac acagcgtctg gccggaagcc cgtgcatagc tggcaaacac tacccgttgg       120
     agtggccgct atgagtttca tattttgtta gccttaagtt cagtttgaat ttgcatttat       180
     cagaataaag agcggcagct catcaactcc gactaagcgt cgtaaaatac attcttatta       240
     cttactctgc cagaccacaa ggctggcagt taaaagagga aagttcctct caacgtaaaa       300
     aatacacttc tgctccccgg actccacgga gcagccaccg aaggaagccc ttcacctctg       360
     gaggaatcct gacgacgaca gtatcgcaag acggtgcgat ctatctttag ttaattggcg       420
     cccaactagc gggcataccc acccgcccac atcatacaga acatgtaagt gggcccgctg       480
     gccaaacctt ttaagtcttc aacacaaacc atagtttcag accagtttta aaacattata       540
     aatacgaaaa aaccagtctg aagagtgttt ttaaaatctc aatactgaat gtgacggcta       600
     gtaggtgttt ggtgtttatt ttcactgcga aaaaaaattt aataaacatc ataatccgtt       660
     gcaaatacgg caaaaacaaa aaaaataatt taatctaatt cgctcacagt tgtgttacgg       720
     cgcattgcta tttcgccgag cagttaaatt tttttcgcat cgtgtaccca acagacatta       780
     tatgctgtta cactgcaaat atttttggtg aggaaattaa catagtgcgg gggttaaata       840
     tcagatccaa ggctctcaca gtttaataca ccagatttta atttttattt gacatttaat       900
     tcagttttgt atatcacatc gctcgagtag aaattttgta tctttattgt ccccacccca       960
     ccgctgtgaa cccgatacgg ccgcgcatgc atttgtattt caattattta tttttcgctt      1020
     ctttatttat cgtggcggag gctcagtccc cgcgcacccc tcaccgtacc agtgttggca      1080
     cttggaaagg cggcaacgtc tccgcgtact tcttgcattg ccagctgccg tcgtgggcaa      1140
     aatagctgag cgggcattgc ataccagtgc agtttaactt aagcacatat gtgctccccg      1200
     tttacacaat atagggaaca taaacctagc gactcagatt ctgacagtga agggcccccg      1260
     cgtattttca tcccaatacg ggcacccacc aacccccctt caggtagaac catggactca      1320
     gatcagctta aggctgtgat tcagaccgcc gttaatcgtg ccttggcaga agcagccggt      1380
     gaagccaggc gtagagaaga agaaatgcgc caagttatac aacagttggc tacccaagtt      1440
     gcagcggtgc aaatcgcacc cacacaagcg gcagtcccta taatcaaagt ataccaaccc      1500
     attgatatca cgggcaacgt cgagtgcagc gagcctctgg atgccgtaaa atgcttgccc      1560
     gaatttacgg gagcacaaga gacatatgtc tcctggcggc aggcggcggt agccgcatat      1620
     tacatattta ggaattatgt aaatagctca cgccactacc aggcggtcgt tataatcaga      1680
     agtaaaataa gaggccccgc cgatgcggtg ctatcttcgt tcggcactgt attgaatttc      1740
     gatgcgatca tagatcgcct cgatttcaca tatagtgaca aacgcgcgat tcacgtcatc      1800
     gagcaggaaa tgggcaccct cagacaggga agcctgactc tattacaata ctacgacgag      1860
     gtcgagaaaa agctcacctt gcttaccaat aaggccacca tgtcgtatga aacggcggcg      1920
     gcaaaaatct tatgcgacaa attccgggat gatgcgctcc gtatatttat ttcgggactc      1980
     aagcgcagtc tttccgatgt cctcttctcg gcgaagccga aggacatgcc aactgcgttg      2040
     gcattagctc aggaagtgga atcaaaccac gaaaggtaca ccttcgcaac atcgtttgca      2100
     aaaagcctgg aggataggga taggaagcaa tacccaatgg cgcaagaacg ccaacaaacg      2160
     ccctaccaag cgcactccca agtgagcggg gggaaaaaaa cccacacttt attaaacagg      2220
     ttaaggctca ggtacactcg gctccgcata acgacaggcg tcgtgaaaac acatcagaac      2280
     ccatggaggt tgacccgtct atgtccaggt tgagacaacc cactcaggcc taccaaaacg      2340
     ggaagcccgc ccactccggt cgttcacacc ctcacaagag acagagggtt aatcacatcg      2400
     ctcagaccat aggtcaggcc gaaggcacgt acgcaaccgc agcgtccagc gcggcggcca      2460
     aagtggatga cgacaccatt tctgaatatg atttagaagt gattaatttt ttaggggaaa      2520
     atccctgctg cccgtcatca gacgaagagt agcggggaaa gagatgaagt tcctcatcga      2580
     cacgggtgcg tcaaaaaatt ttatccggcc tcacaaaggc ttaaaaggcg ttcgccccgt      2640
     cgattcccca ttcaccatcc attcactcca tggcgttacc acgatcacga aaaaatgctt      2700
     cgtgtcactt tttgatttga aggccacgtt cttcatttta cctgatttgt cctcctttga      2760
     cgcgataatt ggcctcgacc tacttaaaca ggcaggggca tcgctttgtc tggcctctgg      2820
     ccacctcaga tggggcaatg gagaagagaa aattgaattc cacccatgcc ccgacgtcaa      2880
     ttttaccgaa gtggactgct cagatgcgcc acccttggtc agaaacgcgt tcttagaaat      2940
     gctgaagact aggaagaagg cttttgcaaa ccctaacgag gctttgccct ataacacatc      3000
     ggtggtagct accatccgaa cagttagtga ggagcccata tacgcaaagt tatacccgta      3060
     cccgatgggg gcggcggact tcgtcaataa agagattgaa gacctgctta aaaacgggat      3120
     aattcagaag tcggtatccc cttacaacaa cccgatatgg gttgtagata agaaagggac      3180
     cgatgaccat ggcaaccgga aaatgagact agttatcgac ttccgcaagc taaacgaaag      3240
     aacagtgccc gataaatatc ccatgccaaa tattagcatg atattgagca acctgggcaa      3300
     tgcgaagtat ttctccacgc tggacctcaa gtctggctat caccaaatca ttcttgcaga      3360
     acgcgacagg gaaaaaacct ctttttctgt gaatggggga aaatacgaat ttcgcagatt      3420
     accgtttggc ctcaaaaatg caggtagcat tttccagagg acaatcgatg acatcctacg      3480
     ggaacaaatc ggcaagttct gctatgttta cgttgacgac gtaattatct actccgaaga      3540
     cgaaaactct cacatcaagc acgtagattg ggttctaaag agcctgcacg atgcgaacat      3600
     gagagtatcg gtagaaaagt ccagcttttt taagaaaagt gtgagcttcc ttgggtttat      3660
     agtcacttgt aacggtgcta caacagaccc agaaaaggtt aaggctataa aagaatttcc      3720
     ggaacccaaa agtgtttttg aggtacggtc atttctaggc ctagccagct actacagatg      3780
     ttttattaag gacttcgcgg caatagcaag gcctatatca gacatcctaa aaggggaaaa      3840
     cggaacagtt agtagacaca ggtcacgaaa cattccggtt cagttctcgg agacgcagca      3900
     acaagcgttc cagaaactac gaaacatctt ggcatccgat gacgtgatgc taaggtaccc      3960
     cgactacaaa aaggcatttg atctaacgac agatgcctcg gcccatggca ttggcgcagt      4020
     attgtcccaa gagggacgcc caataacaat gatctcaagg acattgaagg acagggaggt      4080
     taactacgcc accaatgaga gggaactctt agccatagtc tgggctttgg ccaagctacg      4140
     gcattacctg tatgcggtta aagacatcaa catctttacc gaccaccagc cgctaacctt      4200
     tgcagtatcg gaatccaatc cgaatgcaaa gattaaaagg tggaaagcgc gcattgatga      4260
     atcaggagcg cgtattttct acaaacccgg caaagaaaac ttggtcgccg atgcattgtc      4320
     acggcaacaa attaacgtca tggaggagca agaagctcaa tcgtgcgtgg ccactgttca      4380
     cagcgaactc tccttgacgc acactatcga aacgacggat aagcccctaa actgctttca      4440
     gaaccagata actctggagg aggcacgctt tccgttaaag cgcagcttcg tcctctttgg      4500
     aaacaagagg cggcatgcga ttaacttccc ctgcaaagag tcattgattg atgaactcgc      4560
     agatgtaatc gttccgaagg gcgtaaacgc cattcattgt gacctgcaca cgctggcact      4620
     aatacaggac gagttggttc ggagatttcc agccaccaaa ttttggcact gcaaaaaccg      4680
     tgtaacggat atttttgcag tccctgaaag acgggaaatt cttaccgtag aacacaacag      4740
     ggcccacagg tcggcccaag aaaacgttaa gcaggtactc tccgagtact actttccgaa      4800
     gatgaccaag ttggctaccg aaatcgtagc aaactgcaaa acatgcgcaa aagccaaata      4860
     cgataggcac ccaaaaaaac atgagctagg cgagactcca atcccctctc atgtgggaga      4920
     actactacac atcgacattt tttctacgga taaaaagtat tttctaactt gcattgacaa      4980
     gttttcgaag ttcgcaattg tgcaacatgt ccactctagg acaatcgaag accttaaacc      5040
     ggccatacta cagattatga atttcttccc tagggctaga gtagtttact gcgataatga      5100
     accttcatta aattcgcata ctatctcgac catgcttgac aatcactttg gcgttagcat      5160
     tgccaatgca ccgccactcc atagcgtgtc aaatgggcaa gtggagcgct ttcatagcac      5220
     ccttttagag cttgctcgtt gcctaaaaat cgacaagggc ataaccgata ctgtggaaat      5280
     tattttgttg gcaaccgcca agtataatga gtcaattcac tccgtcgttg acaaacgacc      5340
     agttgacatc gtgcagaagc acccagatga cccacagacg gaagtccgga acaaaatcat      5400
     taaggcacaa aacacgctca ggaccaggga aaacgcctcc cgacaacaca gagtattcga      5460
     agtcggcgag aaggtattgg ttaaatccaa tagaaggctg ggaaataaac tcacaccctt      5520
     gtgcgaggag agagccgtag aagcggacct ggggaccacg gtcctcatta aggggagggt      5580
     ggtccacaag gacaatctta aatgatatga ccaacaatgt cctttatggt ttttttttta      5640
     ttattcattt tttatattca tttttatatt atattttttt atcacacctt caagccattt      5700
     ggcgcatctt attttttata ttcattagtt attacaactt caagccgctt ggcgcacttt      5760
     gttttttact ataggttcgt agctactggc atagtttgtt ttaagttcat tttatcggtg      5820
     gtgggaaaaa cctctataag cataaaaata gctaaagctt aatttcacag gatcggacca      5880
     acattttgca tactcctgtc cttggcgtcg gcccacgtta ccgattattc acaggccagg      5940
     tacatccccg ttatagatgg cgaaatccta gtatgggagg agtttgctta cgtcacgcac      6000
     acagcaaacc tctcagaata tgggcgtgta atagaggaga caaccaacat gatagacatg      6060
     tttccgctat cccatatgaa gaagcttctg agcgtggata ccgcccacct ccaggacttg      6120
     ttagagtcgt tgggcgttca tcacagagta gctaggagct tggatttctt aggatctatg      6180
     ctaaaggttg tagcagggac accagatgcc agcgacttag aaaaaattaa gtttaccgaa      6240
     atgaggttag tcgagtctag caatagacag atccaaatta acaccaaaac ccaaaatcaa      6300
     attaatcaac ttacctctac cgtcaattca attttgagat cagccaaaac ctcacaaata      6360
     gacactggac acttatatga aacactgctt gctagaaacc gcatgttgat ggcggaatta      6420
     caaaatttaa tgcttgcaat aaccctagcc aggattaaca ttgttagtcc gaacatttta      6480
     gatcacgaag acttagaaac agtttggctt gaggaaccca ccgacacacc tataggagat      6540
     cttttgtccg tctcgtctgt aaagatttta cagtcccgta acattttaca ctttatcatt      6600
     aaattcccca aaattaaatt ggcctgcaag aagatcacta ttttcccagt tgcccatggt      6660
     ggaacgatgt tgcagatcat agacaatgtc atagccgaat gcagcggaga agtttacgcc      6720
     atcaaaaact gctccgaatc accgagagcc acattctgcc gcctagcctc agagagttcg      6780
     tgcgccaaag aactgcacgc cggtggggta gcacactgcc gagtacaaga gagtgacctg      6840
     catctgataa cctacgtaga cgaaggaatt attatcatca acgataggtc ggccaaagtg      6900
     cgagtggaca acggcacaga aatctggact catggcacac acctcataac ctttgacaaa      6960
     caggccatca taaatggcac actcttcatc aaccacaaca acactcagag gagagcccca      7020
     gggacagcaa gtcttccctt gttgaacatc accgccaccc aagatgtcct cagcctcccg      7080
     tatcttcacc gcctgagtga acgaaacttg gagttcatta aggggttcaa agaagagatt      7140
     gagaaccaaa gaacacgtct cgtagcaatt attgcaggag caatatgctg cgcactcatc      7200
     tgcatcgggc ttatttttag gcgtttcact gaggcaagaa aatccgcagg ccaagttagg      7260
     cagattatcg ctgaattaca gacggccgag ggcggcctta attctgaggg gggagtagtt      7320
     aactaagtta accgggcgac ggctacgacc gatcgtccga agactcgctc cggccaaatt      7380
     gctgacacag cgtctggccg gaagcccgtg catagctggc aaacactacc cgttggagtg      7440
     gccgctatga gtttcatatt ttgttagcct taagttcagt ttgaatttgc atttatcaga      7500
     ataaagagcg gcagctcatc aactccgact aagcgtcgta aaatacattc ttattactta      7560
     ctctgccaga ccacaaggct ggcagttaaa agaggaaagt tcctctcaac gtaaaaaata      7620
     cacttctgct ccccggactc cacggagcag ccaccgaagg aagcccttca cctctggagg      7680
     aatcctgacg acgacagtat cgcaagacgg tgcgatctat ctttagttaa tt              7732
//
ID   GYPSY6_I    repbase;    DNA;    INV; 7012 BP.
XX
AC   .
XX
DT   21-MAR-2001 (Rel. 6.02, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY6_I is an internal portion of the GYPSY6 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY6_LTR; GYPSY6_I.
XX
NM   GYPSY6_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7012
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY6_I.";
RL   Direct Submission to Repbase Update (28-FEB-2001).
XX
DR   [1] (Consensus)
XX
CC   GYPSY6_I is an internal portion of GYPSY6 endogenous retrovirus.
CC   GYPSY6's long terminal repeat is listed in Repbase Update as
CC   GYPSY6_LTR. GYPSY6 has lost activity very recently.
CC   Its 3 copies are 99% identical to the consensus sequence.
CC   GYPSY6_I is 71% identical with the GYPSY2_I and GYPSY3_I
CC   consensus sequence.
CC   GYPSY6_I internal sequence encodes the 326-aa gag, 1013-aa pol
CC   and 484-aa env proteins.
CC   gag (positions 1026-2003):
CC   MDSDQLKAVIQTAVNRALAEAAGEARRREEEMRQVIQQLATQVAAVQIAPTQAAVPIIKVYQPIDITGNV
CC   ECSEPLDAVKCLPEFTGAQETYVSWRQAAVAAYYIFRNYVNSSRHYQAVVIIRSKIRGPADAVLSSFGTV
CC   LNFDAIIDRLDFTYSDKRAIHVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYETAAAKILCDK
CC   FRDDALRIFISGLKRSLSDVLFSAKPKDMSTALALAQEVESNHERYTVATSFAKSLEDRDRKQYPMAQER
CC   QQTPYQAHSQVSRGKNPHFIKQVKAQVHSAPHNDRRRENTSEPIGG
CC   pol (positions 2277-5315):
CC   MKFLIDTGASKNFIRPHKGLKGVRPVDSPFTIHSLHGVTTITKKCFVSLFDWKATFFILPDLSSFDAIIG
CC   LDLLKQAGASLCLASGHLRWGNGEEKIEFHPCPDVNFTEVDCSDAPPLVRNAFLEMLKTRKKAFANPNEA
CC   LPYNRSVVATIRTVSEEPIYAKLYPYPMGTADFVNKEIEDLLKNGIIQKSVSPYNNPIWVVYKKGTDDHG
CC   NRKMRLVIDFRKLNERTVPDKYPMPNINMILSNLGNAKYFSTLDLKSGYHQIILAERDREKTSFSVNGGK
CC   YEFRRLPFGLKNAGSIFQRTIDDILREQIGKFCYVYVDDVIIYSEDENSHIKHVDWVLKSLHDANMRVSA
CC   EKSSFFKKSVSFLGFIVTCNGATTDPEKVKAIKEFPEPKSVFEVRSFLGLASYYRCFIKDFAAIARPISD
CC   ILKGENGTVSRHRSRNIPVQFSETQQQAFQKLRNILASDDVMLRYPDYKKAFDLTTDASAHGIGAVLSQE
CC   GRPITMISRTLKDREVNYATNERELLAIVWALAKLRHYLYAVKDINIFTDHQPLTFAVSESNPNAKIKRW
CC   KARIDESGARIFYKPGKENLVADALSRQQINVMEEQEAQSCVATVHSELSLTHTIETTDKPLNCFQNQIT
CC   LEEARFPLKRSFVLFGNKRRHAINFPCKESLIDELADVIVPKGVNAIHCDLHTLALIQDELVRRFPATKF
CC   WHCKNRVTDIFAVPERREILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLATEIVANCKTCAKAKYDRHP
CC   KQHELGETPIPSHVGELLHIDIFSTDKKYFLTCIDKFSKFAIVQHVHSRTIEDLKPAILQIMNFFPRARV
CC   VYCDNEPSLNSHTISTMLDNHFGVSIANAPPLHSVSNGQVERFHSTLLELARCLKIDKGITDTVEIILLA
CC   TAKYNESIHSVVDKRPVDIVQEHPDDPQTEVRNRIIKAQNTLRTRENASRQHRVFEVGEKVLVKSNRRLG
CC   NKLTPLYEERAVEADLGTTVLIKGRVVHKDNLQ
CC   env (positions 556-7012, it stops in GYPSY6_LTR):
CC   FHRIGPTFCILLPLASAHVTDYSQARYIPVIDGEILVWEEFAYVTHTANLSEYGRVIEETTNMIDMFPLS
CC   HMKKLLSVDTAHLQDLLESLGVHHRVARSLDFLGPMLKVVAGTPDSSDLEKIRFTEMRLVESSNRQIQIN
CC   TKTQNQINQLTSTVNSILRSAKTSQIDTGHLYETLLARNRMFMAELQNLMLAITLARINIVSPNILDHED
CC   LETVWLEEPTDTPIGDLLSVSSVKVLQSRNILHFIIKFPKIKLACKKITIFPVAHGGTMLQIIDNVIAEC
CC   SGEVYAIKNCSESPRATFCRLASESSCAKDLHAGGVAHCRVQESDLHPITYVDEGIIIINDRSAKVRVDN
CC   GTEIWTHGTHLITFDKQATINDTLFINHNNTQKRAPGTASLPLLNITATQDVLSLPYLHRLSERNLEFIK
CC   EFREEIENQRTRLVAIIAGAICCALICIGLIFRRFTEARKSAGQVRQIIAELQTAEGGLNSEGG.
XX
FH   Key           Location/Qualifiers
FT   CDS           903..2003
FT                 /product="GYPSY6_I_1p"
FT                 /note="GAG."
FT                 /translation="MCSPFTQYREHKPSDSDSDSEGPPRIFIPIRAPTNPP
FT                 SGRTMDSDQLKAVIQTAVNRALAEAAGEARRREEEMRQVIQQLATQVAAVQ
FT                 IAPTQAAVPIIKVYQPIDITGNVECSEPLDAVKCLPEFTGAQETYVSWRQA
FT                 AVAAYYIFRNYVNSSRHYQAVVIIRSKIRGPADAVLSSFGTVLNFDAIIDR
FT                 LDFTYSDKRAIHVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYE
FT                 TAAAKILCDKFRDDALRIFISGLKRSLSDVLFSAKPKDMSTALALAQEVES
FT                 NHERYTVATSFAKSLEDRDRKQYPMAQERQQTPYQAHSQVSRGKNPHFIKQ
FT                 VKAQVHSAPHNDRRRENTSEPIGG"
FT   CDS           2277..5315
FT                 /product="GYPSY6_I_2p"
FT                 /note="POL."
FT                 /translation="MKFLIDTGASKNFIRPHKGLKGVRPVDSPFTIHSLHG
FT                 VTTITKKCFVSLFDWKATFFILPDLSSFDAIIGLDLLKQAGASLCLASGHL
FT                 RWGNGEEKIEFHPCPDVNFTEVDCSDAPPLVRNAFLEMLKTRKKAFANPNE
FT                 ALPYNRSVVATIRTVSEEPIYAKLYPYPMGTADFVNKEIEDLLKNGIIQKS
FT                 VSPYNNPIWVVYKKGTDDHGNRKMRLVIDFRKLNERTVPDKYPMPNINMIL
FT                 SNLGNAKYFSTLDLKSGYHQIILAERDREKTSFSVNGGKYEFRRLPFGLKN
FT                 AGSIFQRTIDDILREQIGKFCYVYVDDVIIYSEDENSHIKHVDWVLKSLHD
FT                 ANMRVSAEKSSFFKKSVSFLGFIVTCNGATTDPEKVKAIKEFPEPKSVFEV
FT                 RSFLGLASYYRCFIKDFAAIARPISDILKGENGTVSRHRSRNIPVQFSETQ
FT                 QQAFQKLRNILASDDVMLRYPDYKKAFDLTTDASAHGIGAVLSQEGRPITM
FT                 ISRTLKDREVNYATNERELLAIVWALAKLRHYLYAVKDINIFTDHQPLTFA
FT                 VSESNPNAKIKRWKARIDESGARIFYKPGKENLVADALSRQQINVMEEQEA
FT                 QSCVATVHSELSLTHTIETTDKPLNCFQNQITLEEARFPLKRSFVLFGNKR
FT                 RHAINFPCKESLIDELADVIVPKGVNAIHCDLHTLALIQDELVRRFPATKF
FT                 WHCKNRVTDIFAVPERREILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLA
FT                 TEIVANCKTCAKAKYDRHPKQHELGETPIPSHVGELLHIDIFSTDKKYFLT
FT                 CIDKFSKFAIVQHVHSRTIEDLKPAILQIMNFFPRARVVYCDNEPSLNSHT
FT                 ISTMLDNHFGVSIANAPPLHSVSNGQVERFHSTLLELARCLKIDKGITDTV
FT                 EIILLATAKYNESIHSVVDKRPVDIVQEHPDDPQTEVRNRIIKAQNTLRTR
FT                 ENASRQHRVFEVGEKVLVKSNRRLGNKLTPLYEERAVEADLGTTVLIKGRV
FT                 VHKDNLQ"
FT   CDS           5747..7009
FT                 /product="GYPSY6_I_3p"
FT                 /note="ENV."
FT                 /translation="MIDMFPLSHMKKLLSVDTAHLQDLLESLGVHHRVARS
FT                 LDFLGPMLKVVAGTPDSSDLEKIRFTEMRLVESSNRQIQINTKTQNQINQL
FT                 TSTVNSILRSAKTSQIDTGHLYETLLARNRMFMAELQNLMLAITLARINIV
FT                 SPNILDHEDLETVWLEEPTDTPIGDLLSVSSVKVLQSRNILHFIIKFPKIK
FT                 LACKKITIFPVAHGGTMLQIIDNVIAECSGEVYAIKNCSESPRATFCRLAS
FT                 ESSCAKDLHAGGVAHCRVQESDLHPITYVDEGIIIINDRSAKVRVDNGTEI
FT                 WTHGTHLITFDKQATINDTLFINHNNTQKRAPGTASLPLLNITATQDVLSL
FT                 PYLHRLSERNLEFIKEFREEIENQRTRLVAIIAGAICCALICIGLIFRRFT
FT                 EARKSAGQVRQIIAELQTAEGGLNSEG"
XX
SQ   Sequence 7012 BP; 2072 A; 1715 C; 1552 G; 1673 T; 0 other;
     ggcgctcaac tagcgggaag tacgcacccg cccacatcat acagaacatg tacatcttcg        60
     acacaaacca tagtttcaga ccagtgttaa aatattaaat aaaccagtct gaagagtgtt       120
     tttaaaatct caatattgaa tgtgacggct aataggtgtt tggtgtttat tttcactgcg       180
     aaaaaaattt aattaacatc ataatccgtt gcaaacacgg caaaaaaaaa aaaaaaaaaa       240
     aaaatagcct aatttaattc gctcacagtt gtgttacggc gcattgctat ttcgccgagc       300
     agttaaattt ttttttttgc aaatattttt ggtgaggaaa ttaacatatt gcgggggcta       360
     aatatcagag ccaaggctct aacagtttaa tataccagat ttgaattttt tatttgacat       420
     ttaattcagt tttgtatact tggtattagc ttaacagtcc attttgtatc ttttattgtc       480
     cccactccac cgctgtgaac ccgatacggc cgcgcatgca tttgtatttc aattatttat       540
     tcttcgcttc tttgtttata gtggcggaag ctcagctccc acccacccct taccttgccg       600
     ctgctccgcg aggtgacggc ttggttcgaa cagctttata catcgttgca aaggcggcgg       660
     ctacagtccc cgcgcacccc tcaccctacc ggtgcttctt tgtttatcgt ggcggaggct       720
     cagtccccgc gcacccctca ccataccagt gttggcactt ggaaaggcgg caactgggct       780
     cacatacata gttgttaagg cggcggctcc gtctccgcgt acttcttgcg ttgccagctg       840
     ccttcgtggg caaaatagct gagcgggcat tgcataccag tgcagtttaa ccttaagcgc       900
     atatgtgctc cccgtttaca caatataggg aacataaacc tagcgactca gattctgaca       960
     gtgaagggcc cccgcgtatt ttcatcccaa tacgggcacc caccaacccc ccttcaggta      1020
     gaaccatgga ctcagatcag cttaaggctg tgattcagac cgccgttaat cgtgccttgg      1080
     cagaagcagc cggtgaagcc aggcgtagag aagaagaaat gcgccaagtt atacaacagt      1140
     tggctaccca agttgcagcg gtgcaaatcg cacccacaca agcggcagtc cctataatca      1200
     aagtatacca acccattgat atcacgggca acgtcgagtg cagcgagcct ctggatgccg      1260
     taaaatgctt gcccgaattt acgggagcac aagagacata tgtctcctgg cggcaggcgg      1320
     cggtagccgc atattacata tttaggaatt atgtaaatag ctcacgccac taccaggcgg      1380
     tcgttataat cagaagtaaa ataagaggcc ccgccgatgc ggtgctatct tcgttcggca      1440
     ctgtattgaa tttcgatgcg atcatagatc gcctcgattt cacatatagt gacaaacgcg      1500
     cgattcacgt catcgagcag gaaatgggca ccctcagaca gggaagcctg actctattac      1560
     aatactacga cgaggtcgag aaaaagctca ccttgcttac caataaggcc accatgtcgt      1620
     atgaaacggc ggcggcaaaa atcttatgcg acaaattccg ggatgatgcg ctccgtatat      1680
     ttatttcggg actcaagcgc agtctttccg atgtcctctt ctcggcgaag ccgaaggaca      1740
     tgtcaactgc gttggcatta gctcaggaag tggaatcaaa ccacgaaagg tacacagtcg      1800
     caacatcgtt tgcaaaaagc ctggaggata gggataggaa gcaataccca atggcgcaag      1860
     aacgccaaca aacgccctac caagcgcact cccaagtaag caggggaaaa aacccacact      1920
     ttattaaaca ggttaaggct caggtacact cggctccgca taacgacagg cgtcgtgaaa      1980
     acacatcaga acccattgga ggttgacccg tctatgtcca ggttgagaca acccactcag      2040
     gcctaccaaa acgggaagcc cgcccactcc ggtcgttcac accctcacaa gagacagagg      2100
     gttaatcaca tcgctcagac cataggtcag gccgaaggca cgtacgcaac cacagcgtcc      2160
     agcgcggcgg ccaaagtgga tgacgacacc atttctgaat atgatttaga agtgattaat      2220
     tttttagggg aaaatccctg ctgcccgtca tcagacgaag agtagcgggg aaagagatga      2280
     agttcctcat cgacacgggt gcgtcaaaaa attttatccg gcctcacaaa ggcttaaaag      2340
     gcgttcgccc cgtcgattcc ccattcacca tccattcact ccatggcgtt accacgatca      2400
     cgaaaaaatg cttcgtgtca ctttttgatt ggaaggccac gttcttcatt ttacctgatt      2460
     tgtcctcctt tgacgcgata attggcctcg acctacttaa acaggcaggg gcatcgcttt      2520
     gtctggcctc tggccacctc agatggggca atggagaaga gaaaattgaa ttccacccat      2580
     gccccgacgt caattttacc gaagtggact gctcagatgc gccacccttg gtcagaaacg      2640
     cgttcttaga aatgctgaag actaggaaga aggcttttgc aaaccctaac gaggctttgc      2700
     cctataacag atcggtggta gctaccatcc gaacagttag tgaggagccc atatacgcaa      2760
     agttataccc gtacccgatg gggacggcgg acttcgtcaa taaagagatt gaagacctgc      2820
     ttaaaaacgg gataattcag aagtcggtat ccccttacaa caacccgata tgggttgtat      2880
     ataagaaagg gaccgatgac catggcaacc ggaaaatgag actagttatc gacttccgca      2940
     agctaaacga aagaacagtg cccgataaat atcccatgcc aaatattaac atgatattga      3000
     gcaacctagg caatgcgaag tatttctcca cgctggacct caagtctggc tatcaccaaa      3060
     tcattcttgc agaacgcgac agggaaaaaa cctctttttc tgtgaatggg ggaaaatacg      3120
     aatttcgcag attaccgttt ggcctcaaaa atgcaggtag cattttccag aggacaatcg      3180
     atgacatcct acgggaacaa atcggcaagt tctgctatgt ttacgttgac gacgtaatta      3240
     tctactccga agacgaaaac tctcacatca agcacgtaga ttgggttcta aagagcctgc      3300
     acgatgcgaa catgagagta tcggcagaaa agtccagctt ttttaagaaa agtgtgagct      3360
     tccttgggtt tatagtcact tgtaacggtg ctacaacaga cccagaaaag gttaaggcta      3420
     taaaagaatt tccggaaccc aaaagtgttt ttgaggtacg gtcatttcta ggcctagcca      3480
     gctactacag atgttttatt aaggacttcg cggcaatagc aaggcctata tcagacatcc      3540
     taaaagggga aaacggaaca gttagtagac acaggtcacg aaacattccg gttcagttct      3600
     cggagacgca gcaacaagcg ttccagaaac tacgaaacat cttggcatcc gacgacgtga      3660
     tgctaaggta ccccgactac aaaaaggcat ttgatctaac gacagatgcc tcggcccatg      3720
     gcattggcgc agtattgtcc caagagggac gcccaataac aatgatctca aggacattga      3780
     aggacaggga ggttaactac gccaccaatg agagggaact cttagccata gtctgggctt      3840
     tggccaagct acggcattac ctgtatgcgg ttaaagacat caacatcttt accgaccacc      3900
     agccgctaac ctttgcagta tcggaatcca atccgaatgc aaagattaaa aggtggaaag      3960
     cgcgcattga tgaatcagga gcgcgtattt tctacaaacc cggcaaagaa aacttggtcg      4020
     ccgatgcatt gtcacggcaa caaattaacg tcatggagga gcaagaagct caatcgtgcg      4080
     tggccactgt tcacagcgaa ctctccttga cgcacactat cgaaacgacg gataagcccc      4140
     taaactgctt tcagaaccag ataactctgg aggaggcacg ctttccgtta aagcgcagct      4200
     tcgtcctctt tggaaacaag aggcggcatg cgattaactt cccctgcaaa gagtcattga      4260
     ttgatgaact cgcagatgta atcgttccga agggcgtaaa cgccattcat tgtgacctgc      4320
     acacgctggc actaatacag gacgagttgg ttcggagatt tccagccacc aaattttggc      4380
     actgcaaaaa ccgtgtaacg gatatttttg cagtccctga aagacgggaa attcttaccg      4440
     tagaacacaa tagggcccac aggtcggccc aagaaaacgt taagcaggta ctctccgagt      4500
     actactttcc gaagatgacc aagttggcta ccgaaatcgt agcaaactgc aaaacatgcg      4560
     caaaagccaa atacgatagg cacccaaaac aacatgagct aggcgagact ccaatcccct      4620
     ctcatgtggg agaactactg cacatcgaca ttttttctac ggataaaaag tattttctca      4680
     cttgcattga caagttttcg aagttcgcaa ttgtgcaaca tgtccactct aggacaatcg      4740
     aagaccttaa accggccata ctacagatta tgaatttttt ccctagggct agagtagttt      4800
     actgcgataa tgaaccttca ttaaattcgc atactatctc gaccatgctt gacaatcact      4860
     ttggcgttag cattgccaat gcaccgccac tccatagcgt gtcaaatggg caagtggagc      4920
     gctttcatag cacccttttg gagcttgctc gttgcctaaa aatcgacaag ggcataaccg      4980
     atactgtgga aattattttg ttggcaaccg ccaagtataa tgagtcaatt cactccgtcg      5040
     ttgacaaacg accagttgac atcgtgcagg agcacccaga tgacccacag acggaagtcc      5100
     ggaacagaat cattaaggca caaaacacgc tcaggaccag ggaaaacgcc tcccgacaac      5160
     acagagtatt cgaagtcggc gagaaggtat tggttaaatc caatagaagg ctgggaaata      5220
     aactcacacc attgtacgag gagagagccg tagaagcgga cctggggacc acggtcctca      5280
     tcaaggggag ggtggtccac aaggacaatc ttcaatgata tgaccaacaa tatcctttat      5340
     ggtttttttt attattcatt ttttatatta tattttttat cacaccttca agccatctgg      5400
     cgcactttat tttttatatt cattagttat tacaccttca agccgcttgg cgcactttgt      5460
     tttttactat aggttcgtag ccactggcat agtttgtttt aagttcattt tatcggtggt      5520
     gggaaaaccc tctataagca taaaaatagc taaagcttaa tttcacagga tcggaccaac      5580
     attttgcata ctcctgccct tggcgtcggc ccacgttacc gattattcac aggccaggta      5640
     catccccgtt atagatggcg aaatcctagt atgggaggag tttgcttacg tcacgcacac      5700
     agcaaacctc tcagaatatg ggcgtgtaat agaggagaca accaacatga tagacatgtt      5760
     tccgctatcc catatgaaga agcttctgag cgtggatacc gcccacctcc aggacttgtt      5820
     agagtcgttg ggcgttcatc acagagtagc taggagcttg gatttcttag gacctatgct      5880
     aaaggttgta gcagggacac cagattccag cgacttagaa aaaatcaggt ttaccgaaat      5940
     gaggttagtc gagtctagca atagacagat ccaaattaac accaaaaccc aaaatcaaat      6000
     taatcaactt acctctaccg tcaattcaat tttgagatca gccaaaacct cacaaataga      6060
     cactggacac ttatatgaaa cactgcttgc tagaaaccgc atgtttatgg cggaattaca      6120
     aaatttaatg cttgcaataa ccctagccag gattaacatt gttagtccga acattttaga      6180
     tcacgaagac ttagaaacag tttggcttga ggaacccacc gacacaccta taggagatct      6240
     tttgtccgtc tcgtctgtaa aggttttaca gtcccgtaac attttacact ttatcattaa      6300
     attccccaaa attaaattag cctgcaagaa gatcactatt ttcccagttg cccatggtgg      6360
     aacgatgttg cagatcatag acaatgtcat agccgaatgc agcggagaag tttacgccat      6420
     caaaaactgc tccgaatcac cgagagccac attctgccgc ctagcttcag agagttcgtg      6480
     cgccaaagac ctgcacgccg gtggggtagc acactgccga gtacaagaga gtgacctgca      6540
     tccgataacc tacgtagacg aaggaattat tatcatcaac gataggtcgg ccaaagtgcg      6600
     agtggacaac ggcacagaaa tctggactca tggcacacac ctcataacct ttgacaaaca      6660
     ggccaccata aatgacacac tcttcatcaa ccacaataac acccagaaga gagctccagg      6720
     gacagcaagt cttcccttgt tgaacatcac cgccacccaa gatgtcctca gcctcccgta      6780
     tcttcaccgt ctgagtgaac gaaacttgga gttcattaag gagttcagag aagagattga      6840
     gaaccaaaga acacgtctcg tagcaattat tgcaggagca atatgctgcg cactcatctg      6900
     catcgggctt atttttaggc gtttcactga ggcaagaaaa tccgcaggcc aagttaggca      6960
     gattatcgct gaactacaga cggccgaggg cggccttaat tctgaggggg ga              7012
//
ID   GYPSY6_LTR  repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   21-MAR-2001 (Rel. 6.02, Created)
DT   21-MAR-2001 (Rel. 6.02, Last updated, Version 1)
XX
DE   GYPSY6_LTR is an long terminal repeat of the GYPSY6 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY6_I; GYPSY6_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-407
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY6_LTR.";
RL   Direct Submission to Repbase Update (MAR-2001).
XX
DR   [1] (Consensus)
XX
CC   GYPSY6_LTR is a long terminal repeat of the GYPSY6 endogenous
CC   retrovirus. There are several copies of GYPSY6_LTR in the genome,
CC   they are ~99% identical to the consensus sequence.
XX
SQ   Sequence 407 BP; 101 A; 107 C; 96 G; 103 T; 0 other;
     agttaactaa gttaaccggg cgacggctac gaccgatcgt ccgaagactc gctccggcca        60
     aattgctgac acagcgtctg gccggaagcc cgtgcatagc cggcaaacac tacccattgg       120
     agtggccgct atgagtttca tattttgtta gccttaagtt cagtttgatt ttatattcaa       180
     taaagagcgc atcgcgcctt gaatcgactc cagcttttgc tgtcattatt aaattggttg       240
     gttggttgac tagccttaag ggcactcaac aacggagaga cgttctccca ccatatcttc       300
     taattctgag gagaagaggt ctgcggcaac cgccctgcct cccggatacc tgcaacctac       360
     gccggagacc gcggcgaggg atctacacca acataattag tttaatt                     407
//
ID   GYPSY7-I_AG repbase;    DNA;    INV; 6534 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   20-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY7-I_AG is an internal portion of the GYPSY7_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY7-I_AG; GYPSY7-LTR_AG; GYPSY7_AG; Gypsy clade; Gypsy group;
KW   env; gag; integrase; protease; reverse transcriptase;
KW   GYPSY46-I_AG; GYPSY46-LTR_AG.
XX
NM   GYPSY7-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6534
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(5), 87-87 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY7_AG is a young family of Gypsy-like LTR retrotransposons.
CC   GYPSY7_AG belongs to the Gypsy group of the Gypsy superfamily.
CC   GYPSY7-I_AG, an internal portion of GYPSY7_AG, is flanked by
CC   GYPSY7-LTR_AG LTRs. The GYPSY7-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   ~0.4% divergent from the consensus sequence.
CC   The consensus sequence encodes the Gypsy7_AG1p 434-aa gag-like
CC   protein (pos. 507-1808), the 1061-aa Gypsy7_AG2p pol-like protein
CC   (pos. 1756-4939), composed of the protease, reverse transcriptase
CC   and integrase domains, and the Gypsy7_AG3p env protein (pos.4962-
CC   6506).
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1808
FT                 /product="GYPSY7_AG1p"
FT                 /translation="MEALAGRIAALEARFSESNVTDDFQDPPLFFTKQDGS
FT                 AVDPESFEKIPGVVKDLPIFCGDPSELNSWINDVDGIIRLYQTISSHSLEK
FT                 QNKFHMICKFIRRKIRGEANDALVASNVGINWNMMRKTLITYYGEKRDLET
FT                 LDFQLMSVYQKGRTLEVYYDEVNRLLSLIANQIQTDDRFNHPEASKAMIGT
FT                 YNKKAIDAFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNLECRKMLTKP
FT                 KHFNTPPSAPRNQIPLPTPHLPPRVFQHQQRPMTANNVRPHFAHHPPIQNF
FT                 AGNFTQRPVWNQPNQQRPIFQRTNFNQPNQMKNFTQQRNNFRQNGPEPMEI
FT                 DPSIRSHQVNYANRPNSSNIRPLKRQRAFNIEAVPRRELEPTSYEDNLYDD
FT                 DVESQASYERYMRNVEKQEKLNENSHYDEISREAELNFLG"
FT   CDS           1757..4939
FT                 /product="GYPSY7_AG2p"
FT                 /translation="KFSLRRNFSRSRIKFFRLKSALPYFIYHGKAGQQIKI
FT                 LIDTGSNKNFINPLHAKISHDVIKPFFVSSVGGDLLITKYSQAQIFAPYSD
FT                 VNVKFYHLQGLKSFDAIIGYDTIKEMGAFVDAKRDNLVLENFIIPLSLHPL
FT                 QEVNRIEIRDTHLNHQEKEKLHLFLNKFQDLFQPPDEKLPFTTKVEATIAT
FT                 NDTEPIYCKSYPYPLSLKQEVETQIKKLLNNGIIRPSRSPYNSPVWIVPKK
FT                 VDASNEKKYRLVIDYRKINLKTKSDRYPIPDTSTVLANLGNNKYFTTLDLA
FT                 SGFHQIRLAEKDIEKTAFSINNGKYEFLRLPFGLKNAPSIFQRVMDDVLRE
FT                 HIGKICHVYIDDIIVFGKTFDEHLKNLEIVLNTLREANFKIQPDKSEFLRT
FT                 EVEFLGFIVSEYGLKPNEKKIESILKYPEPQTIRELRSFLGLSGYYRRFVK
FT                 NYAALAKPLTKLLRGEDGQGHCKITKNQSKNFPIKLDDDAKRAFKTLKEVL
FT                 SSDDVLAYPDFDHDFILTTDASDKAIGAVLSQNVNGVEKPITFISRTLSKT
FT                 EENYATNEKEMLAIVWALHSLRNYIYGAKIIILTDHQPLTYAMSPKNNNAK
FT                 LKRWKAFIEEHNYELSYKPGKTNVVADALSRIQINSLTPTQHSAEEDDLSF
FT                 IPSTEAPINVFRNQLIFQKGTISSYEFVNPFPKFKRHTFIEPQFSIDFIKD
FT                 KLKRFMIPGIINGIFTDEPTMGIIQETFKNLFNISTMKARFSQTQVQDICD
FT                 QEQQIEEIRKIHNFAHRNAKENSLQAIKKFYFPSMRNKIEQYVKNCETCKV
FT                 EKYERRPPEYIPVKTPIPKYPGEIVHVDIFAYNANFLFISSMDKFSKYLKL
FT                 KPIKSKSIADVKEVLLQLLYDWNLPRQIIFDNECTFVSNVIEQSILNLGVS
FT                 IFKTPVNRSESNGQVERCHSTIREIARCTKGLNPDMSLITLIQQAVYKYNN
FT                 TIHSFTKETPRKVYIGEQSEELSFRDRSKLKEKIESKIIKIFEEKNEKIKD
FT                 DKYQDYEPNQFAYEKNKTMNKRDSRYKTVVVKENHPTYIIDSNNRKIHKIN
FT                 LRKN"
FT   CDS           4962..6506
FT                 /product="GYPSY7_AG3p"
FT                 /translation="LIFYYRIAFFTLYGVLQASINIFDLTNNPLAIVPLGQ
FT                 AKIRIGYLRTIHPIDLTELEEIISRVFENSTNSTGKSPLQSLINLKLEKLN
FT                 ATISKIRPRRLRTKRWNSIGTAWKWIAGSPDAEDLTIINTTLNSLILQNNE
FT                 QLLINNGLSRRFQETTNIANHVIDLQNRIQREHQTEIQQIIKIANLDALQA
FT                 HIKTLQEAILAAKHGIPNSELLSIEDLNTVAEFLAQNGIYYTSVEEMLTQA
FT                 TAQVTMNSTHVIFMLKFPRLSYETYEYNYIDSIIQNDKRILIKHNYIIRNL
FT                 THMFELPQPCIDQSSHQLCESKDLEEPSRCIRQLVQGEHTECMYEKVYSTG
FT                 LVKHINNANILLNDATAEISSNCSNINHILNGSYLIQFHNCNIFINGELFP
FT                 STEVSITGKPYISTLGLIAKEDGIRDEPSIEHLRNITLQHREKLHTISLVN
FT                 NSLTWKLHIFGSIGLTTIVLITIAILYFITSIRRTKISLNIPTNNTNRQDV
FT                 HHIETFVKKPTTFHALGRL"
XX
SQ   Sequence 6534 BP; 2503 A; 1267 C; 1070 G; 1694 T; 0 other;
     ggcgcccgaa tagggacctc tagtgaagtg aaaatcaagt gacgagtagt gatcgcgaaa        60
     gagcgtaatc acaccgtgct tagaacatct cccgatcgca gattgcagcc gtgtgtatga       120
     gcacctaagt agccggtagc agccaataac tcgttgccgg aggaaaggga caacgccgac       180
     acaccgagaa ggaaaaattc accggaggcc cgagcaacag aaaccaaccc cgtcagagga       240
     ggcgaagcaa ccagccccgt aagaagggtg aagcatgaat ttattaatgt aagtaaaact       300
     ttcaatcata gtaagtataa acatttatta aagcgacaaa aaatattaaa acattataat       360
     cagtgttaaa gtgagtgatt agtgagtgaa aagaaaatca ttatcacaaa agttaagtca       420
     aactggagga attagttcaa tcattacgac aattctcagt cacagtaaaa tctatagata       480
     acgaagaaaa actaacaaac aaagatatgg aggcactagc tggcagaatt gcagctttag       540
     aagcacgttt tagtgaaagc aatgttacag atgattttca agacccacca ctttttttta       600
     caaaacaaga tggtagtgca gtagatcccg aatctttcga aaaaatccct ggagttgtaa       660
     aagatctccc aattttctgc ggtgacccaa gtgaacttaa tagctggatc aatgacgtag       720
     atgggataat ccgactatac caaactatat ctagccatag tttggaaaag caaaataaat       780
     tccacatgat ttgtaaattc atacgtagaa aaattagagg tgaagccaac gatgctttag       840
     tagcatctaa cgtagggata aattggaata tgatgagaaa aactctcata acttattatg       900
     gagagaagcg agatttggaa actctcgatt ttcaacttat gagtgtctac caaaaaggtc       960
     gaactttgga agtttattac gacgaggtta atagacttct ttcacttatt gcaaatcaga      1020
     tacagacaga cgatagattt aaccatccgg aagcttcgaa agctatgatt ggaacataca      1080
     acaagaaagc gatcgatgct tttatcagag gtctcgatgg ggacgtttat aaatttattc      1140
     gtaactacga accaacatcc ttagcagcag cctacagcta ttgcatttct tttcaaaacc      1200
     tagagtgccg taagatgcta acaaaaccaa aacattttaa cacacccccg tcagccccca      1260
     gaaaccaaat accattgccc acacctcatc taccaccaag agtgttccaa caccaacaaa      1320
     gaccaatgac agcgaacaac gtaagacctc attttgcgca ccacccaccg attcaaaatt      1380
     ttgcaggaaa ttttacacaa cgtcctgttt ggaatcaacc aaatcagcaa agaccaattt      1440
     ttcagcgcac aaattttaat caaccaaatc agatgaaaaa ttttacacag cagagaaaca      1500
     attttcgcca aaatggacct gaaccgatgg aaatagaccc atcaattagg tcacatcaag      1560
     ttaattatgc gaacaggccg aactcctcaa acattcgtcc attgaaaaga caaagagctt      1620
     tcaatattga agcagttccg cgacgtgaat tagaaccgac ttcatatgaa gataatctct      1680
     acgatgatga tgtcgaaagt caggcgtcat acgaacgata tatgagaaat gtagaaaagc      1740
     aagaaaaact aaatgaaaat tctcattacg acgaaatttc tcgcgaagca gaattaaatt      1800
     ttttaggtta aaatcagctt taccatattt tatataccat ggtaaggcag gtcaacaaat      1860
     taaaattcta atcgacactg gatctaataa aaatttcatc aaccctttac atgcgaaaat      1920
     ttctcacgac gttataaaac cattttttgt atcatctgtg ggaggagatt tactcatcac      1980
     aaaatattca caagctcaaa tatttgcccc ttattccgat gtaaatgtca aattttatca      2040
     tttgcaggga ctaaaatcat ttgacgccat aataggttat gataccatca aagaaatggg      2100
     agcatttgta gacgctaaaa gagacaatct agttcttgaa aattttataa tacctctctc      2160
     acttcatcca ttacaggaag ttaacagaat tgaaataaga gacacacatc ttaaccacca      2220
     agaaaaagaa aaattacatt tatttcttaa caagtttcaa gatttattcc agccacccga      2280
     cgaaaagttg ccctttacaa caaaggtaga agcaaccata gccacgaatg atacggaacc      2340
     aatttactgt aagtcatacc catacccttt gtccctcaaa caggaagtgg aaacacagat      2400
     aaaaaaatta ttaaataatg gtataattcg accatctagg tcaccatata attcacctgt      2460
     gtggatagtt cccaaaaagg ttgacgcatc taacgaaaaa aaatatcgac ttgtgatcga      2520
     ttacagaaaa ataaacctga aaactaaaag cgatagatat cccattcccg atacttcaac      2580
     agtacttgcc aatctaggaa ataataaata ttttacaaca ctcgatctag catcgggatt      2640
     tcaccagatt cgtttagcag aaaaagatat cgaaaaaacc gccttttcca tcaataatgg      2700
     aaaatacgaa tttttaagat tacctttcgg tctgaaaaat gcaccttcga tttttcagag      2760
     agtcatggac gatgttctta gagaacatat tggaaaaatt tgtcacgtat acatagacga      2820
     tataatagtc tttggaaaaa cattcgacga acatctgaaa aacttggaaa ttgttttgaa      2880
     tacattacga gaagccaatt ttaaaataca gccagacaaa tcagagtttt taagaacaga      2940
     agttgaattc ttaggattca ttgtttcaga atatggcttg aaaccaaatg agaaaaagat      3000
     agaaagtatc ttaaaatacc ccgaacctca aactattcga gaacttagat catttttagg      3060
     actgtctgga tattacagaa gatttgttaa aaattatgca gctttagcaa aacctttaac      3120
     aaaactttta agaggggagg atggccaagg ccactgcaaa attacaaaaa atcaatctaa      3180
     aaattttccg ataaaattag atgatgatgc caaacgcgct ttcaaaactc ttaaggaagt      3240
     tttatcatcc gatgatgttt tagcataccc cgattttgat catgatttta ttttaactac      3300
     cgacgcttct gacaaagcaa tcggagctgt tctttcccag aacgttaatg gtgttgaaaa      3360
     accaataaca ttcatatcta gaacactatc aaaaacagaa gagaattatg ctacaaacga      3420
     aaaagaaatg cttgctatag tttgggcttt acattctcta cgtaattaca tttacggtgc      3480
     aaaaataata atattaacag atcaccaacc tttaacatat gcaatgtcac caaaaaataa      3540
     caatgcaaaa ttaaagcgat ggaaagcatt catagaggaa cataactatg agctaagtta      3600
     caaacctgga aaaaccaacg tggtagctga tgctctttca cgcatacaaa ttaactcact      3660
     aactcctaca caacactctg ccgaagaaga tgatctttct tttatccctt ctaccgaagc      3720
     tccaattaat gttttccgaa accaattaat ttttcaaaaa ggtactatta gttcctacga      3780
     gtttgtaaac ccctttccta agtttaaaag gcacactttc atagaaccac aattttcaat      3840
     cgattttata aaagacaaac ttaagagatt catgatacct ggtataataa atggcatatt      3900
     cactgatgag ccaactatgg ggatcattca agaaaccttt aaaaatctat tcaatatatc      3960
     aaccatgaaa gcaagatttt cacaaactca agttcaagac atttgtgatc aagaacaaca      4020
     gatagaagaa attcgtaaaa tacataactt tgcccataga aacgctaagg aaaattcatt      4080
     acaagctata aaaaaatttt atttcccttc catgagaaac aagatagaac aatatgttaa      4140
     aaactgcgaa acttgcaaag tagaaaaata cgaaagaaga ccccctgaat acataccagt      4200
     taaaacacca atcccaaaat atccaggaga aattgttcat gttgatatat ttgcgtataa      4260
     tgcaaatttt ttattcatct cgtcaatgga caaattttcg aaatatttga aattaaaacc      4320
     aattaaatca aaatccatag cagacgttaa ggaagtactg ctacaattat tatacgattg      4380
     gaatttgcct agacaaatta tatttgataa cgaatgtaca tttgtatcga acgtcataga      4440
     gcagtccata ctaaatttag gtgtatcaat ttttaagaca ccagtgaata gatcagagtc      4500
     aaatggacaa gtggaacgtt gtcactccac gatcagagaa atcgcaagat gtacaaaagg      4560
     tttgaatcca gacatgagct taattacctt aatacaacaa gccgtgtata agtataataa      4620
     tactattcat tcttttacaa aagagactcc cagaaaagta tatattggag agcaatcaga      4680
     agaactttca tttagagata gatcaaaatt aaaagaaaaa attgagagta aaattataaa      4740
     aatatttgaa gaaaaaaatg aaaagattaa agatgataag taccaagatt acgaaccgaa      4800
     tcaatttgcg tatgaaaaaa ataaaactat gaataagcgt gacagtcgtt ataagacagt      4860
     ggtagttaag gaaaatcatc caacgtatat aatagattcg aacaatcgaa aaatccacaa      4920
     aataaattta agaaaaaatt aatgatataa ttatgattta attaattttc tattacagaa      4980
     tcgcgttttt cacactatat ggtgttctac aagctagcat aaacattttc gacttaacaa      5040
     acaacccatt ggctattgtt ccgttaggac aagcaaaaat taggatcgga tacttgagga      5100
     cgattcatcc aattgatctt accgagctag aagagataat ttctcgagtt tttgaaaata      5160
     gcacaaacag tacaggaaaa tccccattgc aaagtttaat taatttgaag ctcgaaaaac      5220
     ttaacgccac aatttctaag attaggccac gtagacttcg aacgaaaaga tggaacagta      5280
     taggtaccgc ctggaagtgg atagctggca gtcccgacgc agaagatcta acgataatca      5340
     acaccaccct gaattcgctc atcctacaaa acaacgagca gctattaatc aataatggtc      5400
     tcagcagaag attccaagaa acaaccaata ttgctaatca tgttatcgac cttcagaata      5460
     ggatccaaag ggaacatcaa actgagatac aacagatcat taagatagca aacctagacg      5520
     cattacaagc ccatataaaa acactccaag aagccatact agccgctaag catgggatac      5580
     cgaatagcga gctactatca atagaagact taaacaccgt tgcagaattt ctggcacaaa      5640
     atggcattta ctatacatca gttgaagaaa tgttaacaca agccacagca caagttacca      5700
     tgaattcaac acacgtgata tttatgctaa agtttccacg tctatcctat gaaacttatg      5760
     agtacaacta tatcgactct atcatacaaa atgataagag aatcttaatc aagcataact      5820
     acataatccg gaatctaacc catatgttcg aattaccgca gccctgtatc gatcagagca      5880
     gccaccagct ttgcgaaagt aaagatctgg aagagccttc acgctgcata cgacaactcg      5940
     tacaagggga gcatacagaa tgtatgtacg aaaaggtgta ttcaacggga ttagttaaac      6000
     acattaacaa tgcgaatatt ctattgaatg atgccactgc cgaaatttca tccaactgca      6060
     gcaatataaa ccacattctt aatggatcat atctcataca atttcacaac tgcaatatct      6120
     ttattaacgg agaactcttt cccagcaccg aagtttcgat aaccggtaaa ccatatatat      6180
     caacccttgg cctcatcgct aaagaagacg gcatcagaga cgaaccttca attgaacatc      6240
     ttcgaaacat aacattgcag cacagagaga aactacatac catcagcctg gttaataatt      6300
     ccctcacatg gaaacttcat atctttgggt caattgggct aacgacaatt gttctgataa      6360
     caatagcaat tttatatttc attaccagta taagaagaac gaaaataagc ctcaacattc      6420
     caacgaacaa caccaaccga caggatgtcc accacataga aaccttcgtg aaaaaaccca      6480
     caacattcca tgctctcggc agactttgag ggcaaagtca tctaagaagg gagg            6534
//
ID   Gypsy7-I_AP repbase;    DNA;    INV; 4472 BP.
XX
AC   Contig49402;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7AP;
KW   Gypsy7-I_AP; Gypsy7-LTR_AP.
XX
NM   Gypsy7-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4472
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 449-449 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3456-3827] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1896..4469
FT                 /product="Gypsy7-I_AP_1p"
FT                 /translation="MLRAGICRPSNSAWASPLLLVGKKDGSFRPCGDYRRL
FT                 NAVTKPDRYPLPHIHDFSSNLYGKTIFSKLDLVRAYHQIPVAHGDIPKTAV
FT                 TTPFGLYEFPVMCFGLKNAAQTFQRLVNEILRGLDFVYAYIDDVLIASHSE
FT                 SEHETHLRSVIERFKKFGVAINVNKCVFGVQQLIFLRHLINGEGCSPLQER
FT                 VDDVHNWPLPLSKKALQRFLGSDNYYHRFIPNAAQLQAPLYDLVSSVKQRD
FT                 GKLQWTKDTRDAFENSRNALASTVHLAHPRPDANLRISTDASNTAIVAVLE
FT                 QFNNNHWEPLDFFSKKLTPTQARYSTFDRELLAAYLALRHFLHLVEGRCTV
FT                 LLTDHKPLTHMLTVKTDKYSDRQLRHISFIAQFVQQVEYVQGDKNVVPDAL
FT                 SRIETVTCHAQLPDFATLSMDQAEDPELQGLLNGTLASSLRLEARDTGSGP
FT                 VYFDVSAPGRLRTYVPATLRRRIFKILHNQAHPGIRATLALIKERHSWVDM
FT                 DCQIRNWVRHCTTCQRTKVQRHVIAPVMPFVTPKRRFGHIHIDLVGPLPSS
FT                 DGHEYLLTAIDRYTRWPEAYPLTNMSAHAVADKLVSQWFSRFGTPDVVTTD
FT                 QGRQFESELFAALSQTYGFRHSRTSPYHPQANGLIERLHRPLKAALTAHNN
FT                 PQWIKSLPTVLLALRSIVKPELGCSPAEMVYGTTLRLLGEIFHAVQPEPHA
FT                 PALVRILKESMSLLRPTTGTDHSKRSIFVPEELQTATHVFLRVDSTRKPLQ
FT                 PRYDGPFAVLDRNNKNFKLQLHNRTSWISIGRFKPAFLLREDPVADHSYAS
FT                 AHVESQSQSTSTLHEVSTAEHPYYSTSIKSRIHSILRKPGTERLKKQVRFF
FT                 FPRGR"
XX
SQ   Sequence 4472 BP; 1121 A; 1275 C; 976 G; 1100 T; 0 other;
     cgacctcgtg ttttatattc gtatttattg taatttaagt tatttctaca aacttttgta        60
     gctgtattac ctctttgtat ataaataaac atttcgctac gtgaattatt agtcactact       120
     tgtgcgttct tatttaataa aatttaattt aggcactgtt tggtttcccg accgagcaat       180
     acactaaaac tggtaacctc gagtgtattt ttcgacacac gttatgactt ctagtagcga       240
     gtaccgtgat ctactctcgc ttgagaacgg ctcgctcgcg agtgatacgt cgaatccgcc       300
     taccgtaaac ccgcccgttt cgaacgatag tttttccgtc gcgagcgtcg cacaagtgcg       360
     tttgccttcg ttttggcgac actcgcctcg cgaatggttt ttacacgcag aagccgtttt       420
     ttcgacccac cgtctacgcg cggatgtctc tcgagcgaac cacgtggttg ccgctttgga       480
     cgaagagggc gttagggcca ttagtgacct catcggcccg gacgtttgct acgaaagcct       540
     caagcaacga ctcatcaccg tcttcgctgt tcctcagtca gcacgttttc gttgtttcgt       600
     tcaacccggt ggttgggaga tcggcgccca actcaactgc tgtgagatat gcgcaacatt       660
     ttgccagacg gcatcggtga agatgccctc aagcagtttt ggctgcacaa attcagctgt       720
     acaacgtcaa aacacagtaa ccaacactct tatcaaaagc atttttttta cataatcttt       780
     gataactctt catgctgaat ttttctatca aaaaatcttt ggaatctgac tattattcca       840
     tgagttatca cgttgtgaac acagagcaat tacacagtgt taagtctgaa ataatttact       900
     aaatgaatta tcctgcaaaa taatgaaaaa tacagttgct gtgttttgac gttgtacagc       960
     tgaattgccc cccgcgacta gtgccataat cgtcggccag gatgggtcgc tagaggatct      1020
     cgccgcacgt gccgaccggg ttatagaggc cggtacctct tacgacctct atgccggcaa      1080
     cagcgccgat gcgtcaaccg accgattccg cgcgatggag agcgcgatcg cggcactcac      1140
     cacacaagtc gcgagtttgg taacactgca gtccgccgcc aagccttatc acagccgctc      1200
     gttttcacat tcgagatctc gctccagaaa caacaacaat ctgtgttttt atcgcgaccg      1260
     ttacggcgcg gacgcaaaaa ttgcaaacct ccgtacactt tcaaaccggc ggaaagctga      1320
     taggggcggc ggaggcagat cagtctcccg ccgctcataa cagacgacgc gttttcgtca      1380
     ctgacgcgcg ttccggtaga cgtttcctca ttgactcggg agcggacatc tctgtcctcc      1440
     caccgtctgt tggtcaacga ccgatctccg gaattatcct caccgccgcg aatggacgaa      1500
     agtcacttaa cctcgatctg ggactcacca ggccatttac gtggacgttc gagattgcag      1560
     atgtcaacag aggcatcatc ggtgcagatt tcctccacta tttcggtcta ctagtcgatg      1620
     ttcgccgaaa ccgtctagtc gatctgaact ccggactcgc atcaaaaatc gctactgtaa      1680
     gtacggtccc atcaactatt tgcgtgatcg cgcaaccgca tacgtggacc aaattagtcg      1740
     ccgagttccc cgaaattacg cgcaaatcgc cggttcccgc ctcgttcacg cataacgtcg      1800
     agcacgtctt atcgactacc ggaccacccg tatttacgcg tccacgtcgc ctcgctcccg      1860
     atcgtctcgt catagcgcgg aaagagttcg actttatgct gcgtgcaggt atttgccgac      1920
     cgtcaaacag cgcttgggcc agtccgttac tgcttgtcgg taaaaaagac ggctcttttc      1980
     gtccatgtgg cgattaccga cgtttaaacg ccgttactaa accggatcgt taccctcttc      2040
     cgcacataca cgacttttcc agtaaccttt acggcaaaac aattttttct aaactggacc      2100
     tagttcgtgc ataccatcaa attccagtcg cgcacgggga catcccgaaa actgctgtga      2160
     caacaccttt tggtctatac gaattcccgg tcatgtgctt cggcctaaaa aatgcagcac      2220
     aaacctttca gcgtttagtc aacgaaattc ttcgaggctt ggacttcgtg tatgcctaca      2280
     ttgacgacgt gctaatcgca tcacattccg aatccgagca tgaaacgcat ctacgctccg      2340
     tcatcgagcg atttaaaaaa ttcggtgtgg ccatcaacgt caacaaatgc gtgttcggag      2400
     tccaacagtt gatttttctt aggcacctca ttaacggcga aggatgcagc ccgctgcaag      2460
     agcgagtcga cgacgttcat aattggccac ttccgctgtc aaagaaagct cttcaacgtt      2520
     tcctcggatc ggataactat taccacagat tcattccgaa cgcagcgcag ttacaagccc      2580
     cgctgtacga cctcgtttcg tcggttaaac aaagagacgg aaaattgcag tggacgaaag      2640
     acacacgcga tgcattcgaa aattcgcgca acgccctcgc gagtacggtt catttagctc      2700
     accccaggcc ggacgccaac cttcgaattt ccacggacgc atcgaacacg gccattgtcg      2760
     cagttttgga gcagtttaac aacaaccatt gggaacctct agattttttc tcaaagaagt      2820
     tgacgcccac gcaggcccga tacagcactt tcgaccgcga acttctagcc gcgtatctgg      2880
     cactccgtca cttcctacat ttggttgagg gcaggtgcac cgtactgttg accgaccata      2940
     agccgctcac acacatgtta accgtcaaaa ccgacaagta cagtgacagg cagctaagac      3000
     acatcagttt tatcgcgcag ttcgtacaac aggtcgaata cgtccaaggc gacaaaaatg      3060
     tggttccaga cgccctttct cgaatcgaga ccgtcacttg tcacgcgcaa ctacccgatt      3120
     tcgcgacgct gtctatggat caagccgaag atccagaatt acaaggtcta ctcaacggca      3180
     cactcgccag ctctttgcgt ttggaggcac gtgacacagg ttcaggtccc gtctacttcg      3240
     atgtatcagc acccggcaga ttgcgtacgt acgtacccgc gacacttcga cgccgcattt      3300
     tcaaaatact gcacaaccaa gctcaccctg gcatcagagc cacccttgcc ttgatcaaag      3360
     aacgacacag ttgggtggac atggattgtc aaattcgcaa ttgggttagg cattgcacaa      3420
     cttgtcaacg gaccaaggtg caacgtcacg taatcgcacc ggtaatgcct ttcgtcacac      3480
     ccaaacgtcg atttggtcat atccatattg atctggtcgg gccgttacct tcatccgacg      3540
     gacacgagta cttactcaca gccatagaca ggtacacgcg ttggccagaa gcatacccac      3600
     taaccaatat gtcagctcac gccgtcgccg acaaactagt atcgcagtgg ttttcgcgtt      3660
     ttggtacacc cgacgtcgtt acaacggacc agggaaggca atttgagtct gagttatttg      3720
     cagccctcag ccaaacttat ggtttccgcc atagtcgaac ttcgccttac cacccgcaag      3780
     caaacggcct aatcgagcga ttacaccgac cacttaaagc agcgttgacc gcccacaaca      3840
     atccgcaatg gatcaaaagc ttgccgacgg tgcttctagc actccgtagc attgttaaac      3900
     cggaactggg gtgttcgccg gccgaaatgg tgtatggtac aacattacgc ttgctcggag      3960
     aaatttttca cgccgttcaa cccgaaccac acgccccggc tttggtccgc attcttaagg      4020
     agtcgatgtc attactccgc cccaccacag gtacagatca ttcgaaacgc tcgattttcg      4080
     tcccggagga actgcaaacc gctacacacg tttttcttcg cgttgattcc acacgaaagc      4140
     cgcttcaacc gcgatacgac ggccctttcg ccgtgttaga ccgcaacaac aaaaatttca      4200
     agctgcaact tcataaccga acaagttgga tctcgatcgg ccgcttcaag cccgcttttc      4260
     tactccgaga agaccccgtc gccgatcact catacgcctc cgctcacgtc gagtcacaat      4320
     cgcaatcaac atcgacactt cacgaagtct caaccgccga gcatccgtac tactcaacca      4380
     gcatcaagtc gcggattcac tccatacttc gcaaacctgg aactgagcgc ctaaagaaac      4440
     aggttcgttt ctttttccca agggggaggt aa                                    4472
//
ID   Gypsy7-I_Dmoj repbase;    DNA;    INV; 5762 BP.
XX
AC   scaffold_6500;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dmoj;
KW   Gypsy7-LTR_Dmoj; Gypsy7-I_Dmoj.
XX
NM   Gypsy7-I_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5762
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1062-1062 (2009).
XX
DR   Genome; scaffold_6500; Positions 24725693 24731454.
XX
CC   Positions [2543-3004] - Reverse transcriptase
CC   Positions [4191-4661] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           1532..4249
FT                 /product="Gypsy7-I_Dmoj_1p"
FT                 /translation="MSIDEETRNQEEINYHDYMQKEYYNQLASYSQYYPQY
FT                 YQEQSYPQTSDYTYTQPATTEQETEQPNEIEIEKAENFSAASLGNQQYIII
FT                 TYKGKNIKCLIDTGSTVNMMTYNVFNLPIHDTDCLIQTSNGPLTITKKVNV
FT                 LSNNLFKSNNEFLLHQFSPDYDLLIGRKLLSDAQAVIDYKSQTVNLYNKKY
FT                 KLINDIPITNQNHFVAQPILETYQHLNNPIRDNSKNQESINSSPYRLDHLN
FT                 EEEKFNLISLLKQYQHIQFKEGDQLSFSNQEKHVINTTHNSPLYTKPYSYP
FT                 QAYEQEVEHQIQDMLDQGIIRPSNSPYCSPLWIVPKKQDASGKQKFRIVID
FT                 YRKLNDVTINDRHPIPNMDEILGKLGKCNYFTTIDLAKGFHQLEMHTDSIK
FT                 KTAFSTKNGHYEYLRMPFGLKNAPATFQRCMNNVLRPLINKHCLVYLDDII
FT                 VYSTSLKEHLHSLQLVFEKLSEANLKLQLDKCEFLKQETSFLGHVITKDGI
FT                 KPNPDKIKAILKYPIPTKTKEIKGFLGLTGYYRKFIPNFADIAKPMTTVLR
FT                 KDAKIDTKNPEYIRAFEKLKQLISNDPILKIPDFKNKFILTTDASNVALGA
FT                 VLSQDGHPISFISRTLNDHETNYSAIEKELLAIVWATKTFRHYLLGRHFEI
FT                 NSDHQPLCWLYKMKEPNSKLTRWRVKLSEYDFDIKYIKGKENHIADALSRV
FT                 KIEQTYFGEETQHSADEDNSNLICITEKPINTFKRQIIFSKGIPNITKQNY
FT                 FKKLIIHITYDNMTKDKAEKYLIDYFCTKTSAMFIDSDADFEIIQNAHKEI
FT                 INTSHTKILRSLIQLKNINSYAEFKELILKTHEKLLHPGIQKTNKLFSETY
FT                 YFPNSQLLTQNIVNECNICNLAKTEHRNTNMPMKITPRPEHCRDKICNRHL
FT                 FL"
XX
SQ   Sequence 5762 BP; 2381 A; 1133 C; 748 G; 1500 T; 0 other;
     taaataaata ctgcataaat acgtgtcaat agacctacaa ttgttagtct taagttgata        60
     ttcaataaag caagttgtca taatccaacc ttgacttcgt cttttaaatc atattagcgt       120
     tgctgttagt atatgtcgca gcatttattc gactcgtaac agttttatct tagtggcgca       180
     gccggtagga tagtaataaa ttgtggatcc tgatgcaata actaagttat taattcttgt       240
     gtcccgttta ctgctatccg ctaaacaaca aacgcgaagg caacccacgc gatggtcaat       300
     atcgcgtcaa gttttaaaat aaaacctcga cagtgacgtg tataccgaaa ttcgcatatt       360
     gccaaagccg cggattgtgc aaaaaacttg aaaataattc gagaagacgc tatagaattc       420
     gaagagaata taattccaga aacatttggt tttctcgcaa accttcgaaa gtgctatcag       480
     tgcatacaaa ccccaacata cgtactaaat aatcaataaa aataaaataa accgacaaca       540
     aataataaat aaaatataat tataataaat taaataaata aacaaaatgg aaggcgacgc       600
     aacaacaccc ctttctgata ccaacatgac ccaagtgatt aatcaactta aaaatgttga       660
     aaagttcacc ggaaataaaa acgctttata cacgttcatc aaccggatcg attatatact       720
     ggccctgtac accaccaacg atgcgaggca gagatcaata ctctttggac ttgttgaaag       780
     ctgcatcagc agtgaagtca tgttatctct tggcatgacc aacctaacta catggacgga       840
     tctccgaaaa cagctaatcc taaacttcaa gacgcagacc aagaaccata ttctactgga       900
     ggaattcagg aacactccgt tcaaaggcaa cgtacgagct tttctggaag aagcagaaca       960
     ccgtaggcag acattgatga gtaagctaga attagaaaat aatcaagatg aaaaaatact      1020
     atatgatcga ttaattaaaa caagtattga cgacctaatt caaaaacttc ctaccaatat      1080
     ttgtattcga atcataaatt gcgaaattcc agatttaaga tcactaatta acatattaca      1140
     agaaacaaat ctttttgatg aaccctgtca aaatttaaat caaaacaaag taaagcaaga      1200
     taaaaatttt aagccaactt atccaaatcc aaatattcaa aagtttccca catttcttca      1260
     accaaaccat ccttatgtcc catatcaacc ttattttcaa caaccatatc ttccacctaa      1320
     tcattattca cctcgaccga tgcaaccaac gcctaaccca gttagaccat ttaaccctac      1380
     acttagacca attttcagac aaaatcaatt tgacaataat cgtttttgac aacatacaca      1440
     aacaactcca caacaaactc ctttcaatag ttttggcgta gccaaccaac caacaaagcg      1500
     tgttagacaa gcagaaagtg aacaaagtaa aatgagtata gatgaagaaa ctagaaatca      1560
     agaagagata aattatcacg actatatgca gaaagaatat tataatcaat tagcttctta      1620
     ttcccaatac tatcctcaat attaccaaga acaaagttat ccacaaacct cagactatac      1680
     atacacacaa ccagccacaa ccgaacagga aacagaacaa ccaaatgaaa tagaaatcga      1740
     gaaagccgaa aatttttcag ctgccagcct cggaaaccaa caatacataa ttatcaccta      1800
     taaaggaaaa aatataaaat gtttaataga tacaggatct actgttaata tgatgacata      1860
     caatgttttt aatttaccaa ttcacgatac cgattgtctt attcaaacca gcaatggacc      1920
     tttgactatc acaaaaaagg tgaatgttct ttcaaacaac ttgttcaaaa gtaataatga      1980
     atttctttta catcaatttt caccagatta cgatctacta attggtagaa aactgctttc      2040
     agacgcacaa gccgttatag attataaatc ccaaactgtt aatttataca ataaaaagta      2100
     taaattaatc aatgatattc cgatcacaaa ccaaaatcat ttcgtagctc aaccaattct      2160
     tgaaacttat caacacctca acaacccaat cagagataat tctaaaaatc aagaatctat      2220
     caactcaagt ccttaccgac tagaccattt aaatgaagaa gaaaaattta atttaataag      2280
     tttattgaaa caatatcaac acattcagtt caaagaaggc gatcaactta gtttcagtaa      2340
     tcaagaaaaa catgttatta acactactca caattcacct ttgtatacaa aaccatacag      2400
     ttatccacaa gcatacgaac aagaagttga acaccaaatt caagacatgt tagatcaagg      2460
     tataatacgc cccagtaatt ccccttattg tagtccttta tggatcgtac cgaaaaaaca      2520
     agacgcttca ggtaaacaaa aatttagaat cgtaattgac tatagaaaat taaacgacgt      2580
     aactataaat gacagacacc caataccaaa catggatgag attttaggaa aactaggcaa      2640
     atgcaattat ttcacaacaa tcgaccttgc aaaaggtttc catcaacttg aaatgcatac      2700
     agattccatc aaaaaaacag ccttttccac aaaaaatggc cattatgaat atcttcgtat      2760
     gccatttgga ttaaagaatg cacctgcaac ctttcaacgt tgcatgaata atgttttgcg      2820
     accgttaata aataaacact gtttagtata tcttgacgat ataattgtat attcaacatc      2880
     tttaaaagaa cacctacatt cactgcaatt agttttcgag aagctttctg aagcaaatct      2940
     caaattacaa cttgacaaat gtgagtttct aaaacaagaa acttccttcc taggacacgt      3000
     cataactaag gatggaataa aacccaatcc tgataaaatc aaggcaattc taaaatatcc      3060
     tattcccaca aaaactaaag aaataaaagg ttttctcgga ctaaccggtt attatagaaa      3120
     gtttattcca aattttgcag acatagccaa accaatgaca acagtacttc gaaaagacgc      3180
     aaaaatagac actaaaaatc cagaatacat tagagctttt gaaaagctaa aacaacttat      3240
     ttccaatgac ccaattttaa aaattccaga tttcaaaaat aaattcattt taacaactga      3300
     cgcaagtaac gtagcccttg gagctgtact ttctcaagac ggacatccta tcagttttat      3360
     tagcagaacc ctcaatgatc acgaaaccaa ttatagcgct atagaaaaag aacttttagc      3420
     tattgtatgg gcaacaaaaa cctttcgaca ctaccttcta ggtcgacatt ttgaaatcaa      3480
     tagtgaccat caaccattat gttggttgta taaaatgaaa gagccaaatt caaaattaac      3540
     ccgatggaga gtaaaattat cagaatacga ttttgacata aaatacataa aaggaaaaga      3600
     aaaccacata gctgacgctc tatcgcgagt aaaaatagaa cagacttatt tcggagaaga      3660
     aacacaacat agcgctgacg aagataacag taatttaatt tgcattacag agaaaccaat      3720
     aaacacattt aaaagacaaa ttatattttc caaaggcatt ccaaatatta caaaacagaa      3780
     ttacttcaaa aaacttataa ttcacatcac atacgacaac atgactaaag acaaagccga      3840
     aaaatattta attgactatt tttgtacaaa aactagtgca atgtttatag acagtgatgc      3900
     agatttcgaa atcattcaaa acgcacataa agaaattatc aacactagcc acactaaaat      3960
     tctacgaagc ctcattcaat taaaaaatat aaactcatat gccgaattta aagaacttat      4020
     tttgaaaacc catgaaaaac tcttacaccc cggaattcaa aaaacaaata aactcttcag      4080
     tgaaacttac tatttcccca acagccaatt actgacacaa aacatagtaa acgaatgtaa      4140
     catttgcaat ttagcaaaaa ccgaacacag aaacacaaac atgccaatga aaattactcc      4200
     cagacccgaa cattgtcgcg ataaaatttg taatagacat ttattcctct gaaggcaaac      4260
     attatcttag ttgcatagac atttactcaa aattcgctac tcttgaaaat attaaagcaa      4320
     aagactggat agaatgcaag aatgcattaa tgcgtatatt caatcagtta ggaaagccaa      4380
     aattattaaa agctgaccga gacggcgcat ttaccagctt agcactcaaa aaatggcttg      4440
     aaaatgaagg agtagaatta caattaaata ctacaaaaac aggaatagca gacatagaac      4500
     gactacacaa aacaataaac gaaaaaatta gaataatcaa cactttaaat gacgaagaaa      4560
     ataaactcag caaaatagaa accatacttt acatttacaa tcacaagact aagcatgaca      4620
     caactggaca aactcctgca cacatatttt tatatgcggg acaaccaaag ttaaacactc      4680
     aagaaaataa agaaaaagta ataaataaaa tcaacagtga ccgacaagaa tacgaagtcg      4740
     ataccagata tcgaaaagga ccattacaaa aaggaaaact agaaaacccc tttaaagcca      4800
     ataaaaatgt tgaaaaaata gatccagatc attaccaaat tactaacaga aatagaatta      4860
     cacgttacta taaaactcag tttaaaaaat taaagaaaat taaccaaatt caaattccac      4920
     aggtttctac ttcataatca tactatcatt tcccatatcc caattgactt tcaatccatt      4980
     aatacaatca aaattatccc atatcctgat cataatggct atcaactcga ttacattagc      5040
     acaacttctt attatgagaa agataataaa atctttaatt aagccaaata ccattgtaac      5100
     ttggaacata acttttacaa ttgtaaaaca aaattgccaa aaaaaaaaaa aaaaaaaaaa      5160
     aaaaaaaaaa aaaataatgt gagtcctaat attcagggta acaaaattta tagatatcaa      5220
     tcaatgtaat ctgcaaataa acgacataat tgtaagctgc ataactattt tcaactagaa      5280
     gttgacctta caccattgta tcccccaata gaaattatta aagtaaaacc tataaatcat      5340
     gatgacattg taaaaattgt atcacaaaat aatactttaa catatacaat cattgtaatc      5400
     acaataacca tattcataat tgtaatccta ttttttaaat atgtatcttg taaccccata      5460
     aaattatttc gaacaaaatt taaaaaaaca aattcacgag cccaacaaac aaacaacgcc      5520
     atcagtcgaa acagaagagc aaaaacagga aaacacgatc atcgagatga cacaatcaac      5580
     tttaccaaaa ctttacccgt ctgtgtcacc ttgactcgca ggctcgcctc ttaaggagag      5640
     ggaagtgaca taatcatact gattacgtct acaatattca gaagctgtat ggtcgcgtca      5700
     ttaagctgat tcgtctttgc aaggcgcgca gcttcgttga cctaggtcta gtattcggat      5760
     ga                                                                     5762
//
ID   Gypsy7-I_Dpse repbase;    DNA;    INV; 7039 BP.
XX
AC   Unknown_singleton_20;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dpse;
KW   Gypsy7-LTR_Dpse; Gypsy7-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-7039
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1063-1063 (2009).
XX
DR   Genome; Unknown_singleton_20; Positions   17528   10490.
XX
CC   Positions [6222-6731] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2407..3873
FT                 /product="Gypsy7-I_Dpse_1p"
FT                 /translation="MGLDRSDDEGASASAICCRLCKVTMAPEDVYRTPCQH
FT                 EFHKTCMRTYLKTQTTCPVCNAVCSAPTAGQPPLVPGKTRQQTKSVLAGGS
FT                 KQSQAGSEGQASISSQASTSNQAANSNQVSREITAAIRGMQNELLIHLTEK
FT                 MSQRISTTVEARLASNAQIPQPSRGSLNMNASLDQLLEIPEGNQGAVYTPP
FT                 LRTSLSRSAASDLAQRPDKVGHIMNNWKLRFSGASDSISVDSFIYRVEALT
FT                 HQTLEGNFMLLCSNANTLFEGKASDFYWRYHKTAGSVRWMDLCEALRKQFR
FT                 DSRTDVDIRQMIRDRKQREKETFEVFFDAIQKLTDRLEQPLSHKTLVEIVR
FT                 RNLRLEIQHEILNQKIDSIEALRDICRRRECFMEEVRRTHGYQKPAPFRKQ
FT                 ISELVDEALGEDAEEFSESEFGEEIAALSLVCWNCRKEGHRYHDCVAKRKI
FT                 FCFGCGAPNTYKPSCKKCQKNTKEKTAESRRLTSVPQRGSAKQD"
FT   CDS           3792..7037
FT                 /product="Gypsy7-I_Dpse_2p"
FT                 /translation="MSKKHQGEDGRVSSADQCSAEGVGETGLDVASGETQG
FT                 EPSRDFGEAEPPIVGWHINLIEGKKLAPPVEIVKSRRLTRNARRIKAHFKS
FT                 LKCINEIRKKEGDKRPYAEVKLLDRTVVGLLDTGAGMSCVGGQLAKEVVCS
FT                 KKPFKLVSSNAFTADGKKHQIVGKLTTKIEYRGESKIIELFIIPNLSQDLY
FT                 LGIDFWSLFELLPSEWKISEICESSDVHTLTSAQEAALNQVISLFPSFAVS
FT                 GLGRTDMLCHTIDVGNAKPVKQRHFSVSPAVEKSLYGEVDRMLRLGVIEES
FT                 GSAWSSPVVLVQKPGKARLCLDSRKVNAVTKKDAYPLPQIDGILSRLPKAE
FT                 YVTSLDLKDAFWQIPLEVASRDKTAFTIPGRPLYQYKVMPFGLCNASQTMS
FT                 RLMDKVIPAALRNQVFVYLDDLLVISDTFPSHLEVLRSVAEHIRHAGLTIN
FT                 IEKSRFCRRSVKYLGHVIGEGGIKTDPEKISAITKFPLPRTLRALRSFLGM
FT                 AGWYRKFIHDFASLSAPLTDLLNQKKKFVMSQDGIEAFEKLKETLCKAPVL
FT                 RSPDFGKPFYIHCDASNTGVGGVLVQKTEEGDEMPIAFVSKKLNKAQRNYT
FT                 VTELECLAALVCIKKFRAYVEGHQFTVITDHASLKWLMSQNVLHSRLARWA
FT                 LKLQGFRFSIEHRKGTQNIVPDALSRVHQDEIAAIDKSNGLLVDLDSPHFR
FT                 AVGYLELVERVKSNQERLPDVKVVDNLVYRRAEHANGDLLHDSFAWKLWVP
FT                 KELISEILKQSHDDPLASHGGIHKTLERVRRYYFWPGLVNDVKAYVNNCSE
FT                 CKTTKAPNFTLRPPMGKPAESQRFFQRLYIDFLGPYPRSRSGHVAIFIVLD
FT                 HYSKFVFLKAVKKLTADVIIKYLREDLFHTFGVPETIVSDNGSQFRAEKFQ
FT                 SLLKSHRISHTLTAVHAPQANASERVNRSVIAAIRAYVRPDQKDWDENLSS
FT                 ICCALRSSIHSGVGATPYYMVFGQQMITSGGTYSLLRSLEMLEDRAAAFTR
FT                 EDSLELVRKKAREVMDKQNARNEKQYNLRSREIVYQVGQEVYRRNFKQSNF
FT                 QAGYNAKLGHAFVKARVRRKLGNSL"
XX
SQ   Sequence 7039 BP; 2039 A; 1449 C; 1714 G; 1837 T; 0 other;
     cccgtttggg taagttgtgg aataaaaaaa gacagcctag cgaaagagta taaaggtgtt        60
     ctgtgggtgc aaatttccat aggtcttaaa ttggaggagg ctcgtcttcc acgaccgcca       120
     gctgaaattc gtagaaattc gccggagctt tgggtcgtcg ccttggagca gttcggcgag       180
     ccagagagga gaggccaact agtgcccggc agacggcagc cgcgtcggct tgttcatcgc       240
     tccgcgtatg cgtccatacc ccgtgcgcag gggaggaggc aaagaaaaaa aaaaagtgtt       300
     cttcagtggc ggcaaatagt ggcagatcga gttagaaaat ttctcataga aggccagccc       360
     agcccaaaat aacaataaca aaaaaaaaaa aaagaatcaa atataagaaa caaataacgg       420
     atcgtagtca gatgctctaa gcatcaatac ccgagttatt ttattctccc tctcatttag       480
     gcttctttag ctctctatcc ctatctatct ctctccacct aactttgcgc tgcgggcgag       540
     cccccacata ccggtgcccg ataagcgccg ctaatctgca cataggaatg caagactgag       600
     cgcagaggaa tgtaaggcgg cgtgagggac gggaagaaaa gagacagaca atcaccgtta       660
     aaattaactc gatctgcctg agccactcgg tcgtcatctc atttttttgt gtgtgcgaat       720
     tgtgtgtgtt cttctttttt tttttttata cttttcaggg gcccaaatcg gaagcgcttc       780
     gtcgatggag gttcctgtaa gtcgtttaat tgaataaata aaatatgtat atgaaagttc       840
     gaaaaatata taaaaatatg aaagttcgcc acgggagcgc acccaattag tgggttgaaa       900
     agagagggca tcagaaagtt cacctcttga ttcttttccc tacgcctctc gtacattaca       960
     ccttctctgt tggtggatcg ctatgcccag caaatgctca cataaaattt tcttacattt      1020
     cttttctgtt cactcctatt caaatcatct gttctctctc atatctagcc taagcttctt      1080
     atttatttac cgtactttac tcaaattatt taaaattaag tcgtagccaa tactcgggga      1140
     agggagaagc aaatgagaac attaaattac tggggatcac taattttagt cataagaaat      1200
     aaataaacgt ttataatgtc tgagtagaag caatagtgtt tgatctcctg cagcaagccc      1260
     ctgtaggtct cgcaaaatat aaggggtctt gtaacaaatt atgtggtatc gggcacagca      1320
     agaccaaggt agggtgggcg aacatcactc ctcatgaaca gctgaggaat tcttttcgtt      1380
     gtccgttcac cagtgcagtt attgtctttc gttttaggtg ttgtgctttc cgtccggttt      1440
     catatggctt attgacacgc attaaatgta aaataataat agggtaggcc tcagcttagg      1500
     agcaaataaa caagaacacc acactcgtgg ccgacgagcc agtagccgga aaattgacag      1560
     cgtgccgctt caagctgaga ggaccatctc gcctacatcg tggttgcacg ttacatttat      1620
     tattattatt ggcgcccaac gtggggcctc actgttaggt gggaattatt acaatttgta      1680
     cttaggggtg tggttcacga acaatgacct aaaacaaacc ttcacttttt aaattttcct      1740
     tccatcgact gttcgatgtc tttattgaag acaaagaaac ccaaatcatt tccgctttca      1800
     ttcagttctc ttacggatct ttggaatacc gatagaaaac taagccccag ggtatgtttc      1860
     cgggccacga ttctaagggt tctgagtgag tttgacttat ttctgtacaa atagcctgat      1920
     tgtcgtgatt aataggaata ctactagaat agctttaaga agctatctgt tgtccatgtc      1980
     atttcagtct gcgctgtaag tgctactcaa ctttatgcct gagggaccaa gggaaaactg      2040
     aaccgtcttg gattcactgg tgatgcattt agctaaagtg cactcctgac cacggatcat      2100
     ttcattaagt gcctcagttt gctttgtctt atctttgttt ggcaggttgg atcactgctt      2160
     ctataagcgc tgttggacgc aggtgcgcag aatttagaat taccactgca aacggcctag      2220
     gtgttctaac ttgccagaaa gtattttcct ctttagctgt acttggtgaa ataattcgga      2280
     cagtttaatt aatattcaaa tttcatttca cttttaaatt tccttattac atatatataa      2340
     gaaaacatac ataaccttta cgagttaagc agatagtttt tttagtaaat acctataaga      2400
     agaaagatgg gcttggatcg gtctgatgat gaaggggcaa gcgcctcagc aatctgttgc      2460
     aggctgtgca aagtcacaat ggcccccgaa gatgtttata gaactccttg tcagcatgaa      2520
     ttccataaaa catgcatgcg aacatacctt aagacccaaa caacctgtcc agtttgcaat      2580
     gcggtttgta gtgccccaac ggctggtcag cctcctctgg tgcctggcaa gactagacag      2640
     cagacaaagt cagttctcgc gggaggcagt aagcaatccc aagcagggtc ggagggtcaa      2700
     gcgtctattt caagtcaagc gtctacttca aatcaagcgg ctaattcaaa tcaagtgtct      2760
     agggagatca cggcggctat taggggtatg cagaatgaat tacttatcca cctgacggag      2820
     aagatgtctc aaaggataag taccactgta gaagctcgtc tagcttctaa tgcgcaaatt      2880
     ccgcagccgt caagagggag cctgaatatg aacgcttctt tggaccaatt gctagaaatt      2940
     cccgagggga accagggcgc agtttacaca cctccactcc ggacttcgct ctctagatca      3000
     gcagcatctg atttagctca gagacctgac aaggtgggtc atataatgaa taattggaag      3060
     cttcgctttt cgggagcctc agactccata agcgtggatt catttatata ccgagtagag      3120
     gcccttaccc atcaaacgtt ggaagggaac tttatgctgt tgtgcagcaa tgcaaacact      3180
     ctgtttgaag ggaaagcatc tgatttttat tggaggtatc acaagacagc tggctcagtg      3240
     cggtggatgg atctgtgtga agcgttgagg aagcagttca gagattcccg gacggacgta      3300
     gacattagac agatgattcg cgataggaaa caaagagaaa aagagacttt cgaggtattt      3360
     tttgacgcaa tccaaaagct cactgacagg ttagagcagc ctctttctca taaaactttg      3420
     gtcgagatag tacgccgaaa cttgcggctg gaaatacaac atgaaatcct gaatcaaaaa      3480
     atagactcaa tagaagcact acgggatata tgtcggaggc gagaatgttt tatggaagag      3540
     gtgcgtcgga ctcatggcta tcaaaaacct gctccatttc gaaagcaaat ctcggagcta      3600
     gtggacgaag ccttgggaga ggatgcggaa gaattctcgg aatcggagtt tggggaggag      3660
     atagcagctt tatccttggt gtgttggaat tgtcgaaaag aagggcaccg ttaccacgac      3720
     tgcgtagcta aacggaaaat attctgcttt ggctgcggag cgccaaacac gtataagcca      3780
     tcttgcaaaa aatgtcaaaa aaacaccaag gagaagacgg cagagtctcg tcggctgacc      3840
     agtgttccgc agagggggtc ggcgaaacag gactagatgt agcaagtggc gaaacgcaag      3900
     gagagccttc tcgggatttt ggggaggcgg aaccaccgat agtgggatgg catataaatt      3960
     tgatagaggg taagaagtta gcacctccag tggaaattgt taagtcaagg agactaacta      4020
     gaaatgcacg taggatcaag gcccatttta aatctctcaa atgtattaat gagataagga      4080
     aaaaggaggg agataagagg ccttatgccg aagtcaagtt actggataga accgtagtag      4140
     gattgctaga taccggcgcc ggaatgagtt gcgtgggtgg tcaattggca aaggaggtag      4200
     tatgcagtaa gaaaccattt aaattggtgt cgtccaatgc ttttacggct gatggaaaga      4260
     agcatcaaat agtaggaaag ttaacaacta agatagagta ccgcggggag tctaaaatca      4320
     tagagctatt cataattcct aatttaagtc aagatttata tttaggtatt gatttttggt      4380
     ccctttttga attattaccg tccgaatgga agatttccga aatttgcgag agttctgatg      4440
     ttcatacact tacgtctgct caggaggcgg cgttaaacca ggtgatttcc ctatttccat      4500
     ccttcgctgt gtcgggtctg ggaaggacag atatgctttg tcataccatc gatgtgggga      4560
     atgcgaagcc cgtaaagcag agacatttct cagtctcacc ggctgttgag aaatcgctgt      4620
     acggggaagt tgataggatg ctgagattag gggtgattga ggagtcagga agcgcttggt      4680
     cttctccggt ggttctggtc caaaagcctg ggaaagctcg tctttgtcta gacagtcgaa      4740
     aagtaaacgc ggtgacaaaa aaagatgcgt acccgttgcc ccagattgat ggcatcttga      4800
     gtagattgcc caaggcagaa tatgtaacta gcctggactt gaaagatgca ttttggcaaa      4860
     tacctttgga ggtggcgtcg agagacaaga ctgcgttcac cataccaggg aggccgttgt      4920
     accaatacaa ggtaatgccg tttggtttat gcaacgcctc acaaaccatg tccagactca      4980
     tggataaggt aatacccgcc gctctccgaa atcaagtttt tgtctactta gatgacctgc      5040
     tggtcatttc agacacattt ccctcgcatc ttgaggtact gcgttcggtg gcagaacaca      5100
     tccgtcacgc agggctgacc ataaatatag agaagagcag attctgtagg agatccgtaa      5160
     aatatctagg tcacgtaatt ggcgaaggcg gcattaaaac agacccggaa aagatttccg      5220
     ccattactaa gtttccgctc ccaagaactc tccgagccct aaggagcttc cttggaatgg      5280
     ccgggtggta taggaaattt atacatgatt ttgcttcact atccgcccct ctaacagact      5340
     tgctaaatca gaaaaagaaa ttcgtcatgt cccaggatgg aatagaggcc tttgaaaaat      5400
     tgaaagaaac gctgtgcaag gctccagttt taagaagtcc tgactttgga aagcccttct      5460
     atatacattg cgacgcgagc aatacgggag tagggggtgt actagtccaa aagacggaag      5520
     aaggggatga gatgccgata gctttcgtgt ctaaaaagct gaataaagcc cagcgcaatt      5580
     atacagtgac cgagctagag tgcctggcgg ccttagtgtg cattaaaaag ttcagagctt      5640
     atgtcgaagg tcatcaattc accgtgataa cggatcatgc ctcactgaag tggttgatgt      5700
     cccaaaatgt tctgcactcg aggttagctc gatgggcact aaaattgcaa ggtttccgat      5760
     ttagcatcga gcaccgaaag ggaacccaga acatagtccc agatgcattg tcaagggttc      5820
     accaggatga gatcgcagca atagacaaga gtaatgggct tctggtggat ctagattctc      5880
     ctcacttcag agcggtaggg tatcttgaat tggtggagcg ggtaaagagc aaccaggaac      5940
     gattgccaga cgtaaaagtg gtcgacaact tagtttaccg aagagctgag catgcgaatg      6000
     gcgacttact tcatgactcg tttgcttgga aattatgggt gcctaaggaa ttgatcagcg      6060
     agatcttaaa acagtcacat gatgatccgt tagcctcgca tgggggtatt cacaagacct      6120
     tggagcgcgt ccgtaggtac tacttttggc caggattggt taacgacgtc aaagcttatg      6180
     tgaataattg cagtgagtgt aagaccacaa aggcgccaaa ctttaccttg cggccaccca      6240
     tgggaaagcc ggccgaatca caaagattct ttcagcgact atacattgat tttcttggtc      6300
     catatcctag gtcacgaagt ggtcacgtcg ctatttttat cgtgttagac cattattcta      6360
     aatttgtttt cctcaaagcc gttaagaagc tgacagctga tgtaattatc aaatacttgc      6420
     gggaggatct ctttcatact ttcggggtgc ccgaaaccat agtgtccgac aatggatccc      6480
     aattcagggc tgaaaaattc caaagccttt taaaaagcca ccgtatctca cataccttga      6540
     cagcggtaca cgcgccacag gcaaatgcct ccgagagagt caatcgctca gtgattgccg      6600
     ccatcagagc gtatgtgcgt ccggatcaaa aagattggga cgagaattta agcagcattt      6660
     gttgcgcgct gagatcgtcc atccactcgg gagtaggcgc tacgccatac tacatggtgt      6720
     ttggtcagca gatgatcact tctggtggca cttactcttt gctgagatca ctagagatgt      6780
     tggaagacag ggcggcagct tttacaagag aggattcctt ggagttggtc aggaagaaag      6840
     cacgtgaagt aatggataag caaaatgcac gtaatgaaaa gcagtataat ctaagatcaa      6900
     gagagatagt ataccaggtt gggcaggaag tttatagaag gaattttaaa caaagcaact      6960
     tccaagctgg atacaacgct aagcttgggc acgccttcgt gaaggctaga gttcggagaa      7020
     agctaggaaa ttcacttta                                                   7039
//
ID   Gypsy7-I_Dya repbase;    DNA;    INV; 4163 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dya;
KW   Gypsy7-LTR_Dya; Gypsy7-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4163
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1064-1064 (2009).
XX
DR   Genome; chrU; Positions 1435651 1431489.
XX
CC   Positions [3236-3697] - Integrase core
CC   'CAAAC' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           2252..4162
FT                 /product="Gypsy7-I_Dya_1p"
FT                 /translation="MWENFIPDLADNKEPLRLLLRKDSIFQWGNTEEKAFQ
FT                 KLKCHLAHVPNLAYFNPKNRTRLIADASPVALGSVLLQFDGKGDPLIISFA
FT                 SKALSEVEKRYSQTEKESLALVWAVEKFYYYLAGLHFELVTDHKPLEAIFK
FT                 PTSKPPARIERWLLRLQSYRFKVIYKTEKENISDILSRLCQSSSSPTTNRM
FT                 EYSILRVVESAIPKSMTISEIAESSLRDEEVVDAIHSLENNSWEREKSTKL
FT                 HPFRFELSTIGPLLLRGNRIVIPTNLRKRVLELANEGHPGESAMKRRLRSK
FT                 VWWPLIDRDAEEFVKTCRDCLMVSQSIRPAPMNRNPFPTGPWIWVASDLLG
FT                 PLPNNEFILVFIDYFSRYMEFKFLRSISSSSLIGVMKEIFCRLGYPKYLRT
FT                 DNGRQYISDEFSEYCKTCGIEQVRTPPYWPQANGEVENMNKSLVKRLKIAY
FT                 SNSKNYKEEIQKFVVMHNVTPHGTTGIAPNQLMFNRIIRDKLPGIEELNEQ
FT                 FTDSAERDRDIIQKEKGKEAADKKRGAKNIDIKIGDKVLVRNVVFPNKLTP
FT                 TFDPTEFEVLERHKNIVKIAGGGKTLMRNVAHVKKIPGDVYVPPAPESGTL
FT                 QTIPAPFQEALEDQPSEVPAQHSPPKVKPLKLRLINKGG"
XX
SQ   Sequence 4163 BP; 1433 A; 786 C; 906 G; 1038 T; 0 other;
     ttggcgacga ggtaaattat aactattata aacgtcgtgt gcttaagaaa taacaggcaa        60
     ataaatgaaa atagcaaaca gtgtaaacag caagcgcata tgactcctgt aaaaatactc       120
     ttgtttgtgg ttaaaatcca actatataca catacatata tggaaaacag aaattatata       180
     tatatgtgtt cacaaaagtg tacagtcgga ggaagaatac attgaaatct aaagtccaat       240
     ataaaataag tgcatgcaaa agaaaaagga aaagaaacga aggatcaaaa taacggggga       300
     atagaagcta attcaagaga gagtgagatc tctcgacaag ctgcggttac gaaaggctga       360
     gtcaagagaa agagatctct tgacaagctt taatgacaaa aggctgcgta aagagagttc       420
     actttacaag ctgtattgat gaaaaaaaaa gaggccgcgt aagagagaat tctcttttac       480
     aagctgttag aaaagaggct gtgcagaaga gtgttattac tgcaagctgg aaggctgcgt       540
     aaagttatct ttacaagctg aactaataaa aagccgggca agagagaatt tctccttgca       600
     agctgttgaa aataaaaagc tgtgcgcgtg aagagaattc tcttggcaag cggtgatata       660
     ttcagaaact ataaatggct gagtaactta tattatatat gtacatgtac atataagtta       720
     tacaagccaa agctagaaaa ataatgttgg tcttagaagg gaaaaatgta atatatatat       780
     atatatatat atatatatat atatatatct gatgtcgacg caattaggaa gagttctact       840
     cgaaagacaa aaccacaagg ggaatgttca agatgcggac gttttggtca cgctagttat       900
     gactcatcat gcccagcaag gcaagcaaaa tgctacaaat gttcaaaaat tggtcatttt       960
     tcccgaaagt gtagaaccac cctgaagaga cggaattctc agtgtaattt tgaaaatgtt      1020
     aagaaacgta agacgaatgt tcgttgtgtg gagggcgaga acacagagct caaattggaa      1080
     aaggagaaca caaactgttt caaaatagca agtgatgagg aagaagagtt tatatactac      1140
     cgtgtggaag gccagaaaat tcctctagtt attgactcag gatcaaggtt caatctcatc      1200
     agcagctcgg attggcaact gctacaaaag aaaggcgcta taatattcaa tgacagatca      1260
     cattctgaaa aacagtttcg aggctatgct tcttaacaat tgcttgaggt aattcgtatt      1320
     tttgaggcac ccatttcggc tgaaagagat attgaagtga ttgcgacatt ttacgttatc      1380
     aaaaatggtc gacaatcatt gttggggcga cccacagcta tacaactcaa tgtccttcgc      1440
     ctaggtttga atgtcaaccg cgatgaagaa cctacaccgt tcccaaagtg gaaaggcgtc      1500
     aaagtaaaac tatgcataga tcccgagatt aggccggtgc aacagccggt aagaagaatt      1560
     ccggtagctt tagaggagaa agttcatgct aagctggagg aagcccttgg acatgacata      1620
     atcgaaccag ttttaggtcc aagttcttgg atctctccca tcgtactggc atttaaagag      1680
     aatggagaca ttcggttatg cgtggatatg cgattggcaa ataaggcaat tcagcgagag      1740
     aactaccctt tacctatttt tgaatcattt atgacaaagt taaaagacgc aaagttcttc      1800
     tcccgccttg atcttaagga tgcctatcac caataagaat tggaagagtc tagtagggag      1860
     attacaacgt ttataacgtc aaaggagctc ttccgatata agagattgat gtttggggtg      1920
     aattcggctc ctgagatttt tcagcgccgg ctggaaacac tgttagctgc attcccgaat      1980
     gccatgaatt acatcgatga cgtgatcact tttggtgcca acgaactcga acatgacgaa      2040
     acagtaaaag cagtttgcaa agtctttaac gacaataatg ttttattaaa caaacaaaag      2100
     tgcatttgga aaacaaacag gctaaaattc ttggagcaca ttttgtccga ctcgggaatc      2160
     gaagttgacc ccgagaagat agaggttatt aagtctttta gagtccccaa gaataaggaa      2220
     gaaacccgca gttttctcgg cctcattaca tatgtgggaa aattttattc ctgatttggc      2280
     cgataacaag gagcccctac gcctattatt acgaaaagac agcatatttc aatggggcaa      2340
     caccgaggaa aaggcttttc aaaagttgaa gtgtcattta gcacatgttc ctaatcttgc      2400
     ttattttaat ccaaagaacc gcacccgttt aatagcggac gcaagtcctg tagctcttgg      2460
     atcggtcctt ctgcagtttg atggtaaagg cgatccgttg attatatcat ttgccagcaa      2520
     agccctgtct gaggttgaaa agcgctactc tcaaacggag aaagagagtt tagcacttgt      2580
     ctgggcagta gagaaattct actattacct agctggtcta cacttcgagc tggtaacaga      2640
     tcataagccc ttagaggcta tcttcaaacc gacatcgaag cccccggctc gtattgagag      2700
     atggttacta cgccttcaat cataccgttt taaagtaatc tataaaaccg aaaaagaaaa      2760
     tatatctgat atattgtctc gactttgcca atcatcatca agtccaacta ccaacagaat      2820
     ggagtacagc atcctgcggg tagtggaaag cgctattccc aagtcaatga ccatctccga      2880
     gatcgctgaa tcgtcattgc gagacgaaga agttgtcgat gcaatacaca gtctagagaa      2940
     taactcttgg gaacgagaaa aatcaacaaa attacatcca tttcgatttg aactgtcgac      3000
     cataggacct ctcctgctaa gaggaaaccg cattgtgatc ccaacaaacc ttcgcaaacg      3060
     ggtacttgaa ttggcaaatg aaggacaccc aggagaatca gctatgaaac gccgcctaag      3120
     atccaaggta tggtggccgc tgatcgacag agatgcagaa gaatttgtaa aaacatgcag      3180
     agactgcctt atggtatccc agtcaataag accagccccg atgaacagaa atccatttcc      3240
     aacgggtccg tggatatggg tggcgtcaga tctcttggga cccctgccta acaatgaatt      3300
     catcttagtt tttatagact atttttctcg ctatatggag tttaagtttt tgcggtccat      3360
     ctcatcgagc agtttgattg gagtcatgaa agaaatattt tgtagattgg gctatccaaa      3420
     atacttacgt accgacaatg gacggcaata tattagcgat gaattctcag aatattgtaa      3480
     gacatgcggc atagaacaag taagaacccc accatactgg cctcaggcta atggggaggt      3540
     agaaaacatg aataaatcct tagtcaaacg actaaaaatt gcctactcaa attcaaaaaa      3600
     ctataaggag gagatacaaa agtttgttgt aatgcataat gtgactcccc atggaaccac      3660
     agggatagcc ccaaaccaat taatgtttaa taggataata cgcgacaaat taccagggat      3720
     agaagaatta aatgaacagt tcacagattc tgcggaaaga gatagagata tcatccaaaa      3780
     agaaaaaggg aaggaagcag cagataaaaa gagaggagct aagaatatcg atattaagat      3840
     tggcgataaa gtgttggtac gaaacgtagt ttttccaaat aaactaacgc cgacttttga      3900
     cccaactgag ttcgaggtat tagagagaca taaaaacatc gtgaagatag caggtggcgg      3960
     caaaacatta atgaggaacg ttgcgcacgt aaagaagata ccaggcgacg tatatgtccc      4020
     accagcgccc gagtcgggta ctctccaaac tattccagca ccgtttcagg aggccctaga      4080
     agaccagccg tcggaagtac ctgctcaaca ctctcctccg aaggtgaaac ccctgaaact      4140
     ccgtctcata aataaaggag gga                                              4163
//
ID   GYPSY7-LTR_AG repbase;    DNA;    INV; 327 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   20-SEP-2005 (Rel. 10.10, Last updated, Version 2)
XX
DE   GYPSY7-LTR_AG is an LTR of the GYPSY7_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   GYPSY7-I_AG; GYPSY7-LTR_AG; GYPSY7_AG; Gypsy clade; Gypsy group;
KW   GYPSY46-I_AG; GYPSY46-LTR_AG.
XX
NM   GYPSY7-LTR_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-327
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(5), 88-88 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY7-LTR is a long terminal repeat of GYPSY7_AG (it internal
CC   portion is deposited as GYPSY7-I_AG). The A. gambiae harbors
CC   ~30 copies of GYPSY7-LTR_AG.
XX
SQ   Sequence 327 BP; 101 A; 79 C; 78 G; 69 T; 0 other;
     agttagaccg acccgctaga aaccagactg caagctggca ttccacaccg gctacgagca        60
     gacgaagatg taacgctaca ccggccacga gcggacaacg gcgacatgcg caagtaatgc       120
     gacacgcaga ccgatcgtga gaacggacca atgcagccag caaccagcgg cctcgttaga       180
     acattagctc gttaggttta gtcagtcgaa gtcgaagtct agaatcagcc agatatagtt       240
     catagtttag ctttagtcag gagtaatcct gtttgtgtaa aataaaaatc tttttttatg       300
     gccaaccggc ctagataaag attaact                                           327
//
ID   Gypsy7-LTR_AP repbase;    DNA;    INV; 130 BP.
XX
AC   Contig49402;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7AP;
KW   Gypsy7-I_AP; Gypsy7-LTR_AP.
XX
NM   Gypsy7-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-130
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 450-450 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 130 BP; 14 A; 47 C; 32 G; 37 T; 0 other;
     tgtggcggcc cgtctacgtg gcgccacaat cgctcctacg ttcacgtcta tccgaacgac        60
     acggcctgtc tgccgttccc gtgttcgcgc gctctctctt tgttttgtat tccgtccgtc       120
     gcgccgtaca                                                              130
//
ID   Gypsy7-LTR_Dmoj repbase;    DNA;    INV; 148 BP.
XX
AC   scaffold_6500;
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 17.07, Last updated, Version 0)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dmoj;
KW   Gypsy7-LTR_Dmoj; Gypsy7-I_Dmoj.
XX
NM   Gypsy7-LTR_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-148
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1065-1065 (2009).
XX
DR   Genome; scaffold_6500; Positions 24725545 24725692.
XX
SQ   Sequence 148 BP; 48 A; 29 C; 31 G; 40 T; 0 other;
     tgtgttggaa ttgtgtggtg aaatgcccaa cactgaatac tcatacactc acacagcctc        60
     acacagtgca taatagacaa ttagaagttg acgcaacatt gttaatgtgt tggaattgtg       120
     tggtgaaatg cccaacactg aatactca                                          148
//
ID   Gypsy7-LTR_Dpse repbase;    DNA;    INV; 551 BP.
XX
AC   Unknown_singleton_20;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dpse;
KW   Gypsy7-I_Dpse; Gypsy7-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-551
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1066-1066 (2009).
XX
DR   Genome; Unknown_singleton_20; Positions   10489    9939.
XX
SQ   Sequence 551 BP; 165 A; 109 C; 157 G; 120 T; 0 other;
     tgagttggaa gatttgcagg gccgaatcat tgggaaatac cacgggaaag atatccgcca        60
     ataacagcta caagcggttc atccttgtga gccttctgca ccccaagtct gatcttggca       120
     ggggggagtt gtacggtgag gcttgtagct gctgtgagga ggcctagggt ttttggggtc       180
     cggcgaaaat taggcaccgt ctaacgagag gcaagacaaa ctctctttaa cagtcggcaa       240
     agagggcctg ggatcaaaga gtgggtcaga gccaggtcag acttcctcgt cgaaaggaga       300
     gcgagttcga agtcgaagtc ggacaagata aaaggctata aatagatggc attggacgcc       360
     attgcgggat tccaagcctg gtcgacagca tttgattgtg ttcaccaagt gtcctctata       420
     gtggcagccg taattgaata ttcaaagaaa gaaaaaagag aaagaccata taaatacaaa       480
     ctagtgaaaa gtagccagga agtgagacgg tgattagtga aacctcttcg atacaccctt       540
     tcgacgggtc a                                                            551
//
ID   Gypsy7-LTR_Dya repbase;    DNA;    INV; 205 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7_Dya;
KW   Gypsy7-I_Dya; Gypsy7-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-205
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1067-1067 (2009).
XX
DR   Genome; chrU; Positions 1431488 1431284.
XX
SQ   Sequence 205 BP; 65 A; 40 C; 60 G; 40 T; 0 other;
     tgtgggaacc tgtaccaaac agcgacgcta ctggaacaag cagcgacgtc acagacgcgg        60
     gagcgggatg agtgggcagc gagagaggga gagtcagtca attgtgaacc accggattga       120
     taagtcgtat taccgaagaa cgaataaaac agatcaataa cagaagctca gcgtgtatca       180
     attgtgtatt ttcggggtct ttaca                                             205
//
ID   Gypsy7-NVi_I repbase;    DNA;    INV; 15196 BP.
XX
AC   AAZX01000892;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7-NVi;
KW   Gypsy7-NVi_I; Gypsy7-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-15196
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1137-1137 (2007).
XX
DR   Genome; AAZX01000892; Positions   16693    1498.
XX
CC   Positions [6166-6537] - Reverse transcriptase
CC   Positions [9225-9563] - Integrase core
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           5002..6648
FT                 /product="Gypsy7-NVi_I_1p"
FT                 /translation="MIDNGAIVNLIKASVLDDDMPICTADARELGEITNQT
FT                 VKMYASIYLDIKGTPVKFQMVSDDFPIPFDGMLGRNYLKKEEAVISYYKNA
FT                 LMISGDVMHPIPFIEHEEEHNPRNIKRGYKCKQTNEVLKVESTQSGKSESM
FT                 NQNDENITDQIGGTVKHIIKARTRQVIQINLIKTELKEGYIPRIDVGNKHL
FT                 FQGEGVVTNVNNTCKIMAINTSEEDVIIEVDPKELIPFDTGPDFSEFNGDM
FT                 IVDQIKRLERVKEAIRRDHLNRKELDIVDRIIEDYLDRFLLTGDKLPCTDM
FT                 IEHHIHLENDVPINTKQYRHPPQHKQVVRDSVEKKLRYKIIRESNSPCNSP
FT                 IWIVPKKPDSHGNLRWRMMIDFRELNKKTIRDAYPLPNIADIMDQLGGATY
FT                 FSIFDLASGFQQIPIAPEDCYNTAFTPINGHYEYTRMPEGLKNATATFQKL
FT                 MEKVLRRLQNIEMLVYLDDIIVYSKDLQEHGSRIRNLMQRLREAKLVLQPD
FT                 KIEFFRKEVGFLGHIISARGVEPNPEKVAAIAKLATPKSAKNIRKVLGMFG
FT                 YY"
FT   CDS           8333..9331
FT                 /product="Gypsy7-NVi_I_2p"
FT                 /translation="MPFLIPTPPDLEPLNKSRGSHQHHEESDNALTHITAK
FT                 MIRAPHNIITVRECLTHKRDNIVNFLSADCDNTWSVARLLVETEAIDLMKI
FT                 KNQKPKSGQVLVTPFKKHHIFTVIVKDKYFNTIKMPNLHEALINLKQILVE
FT                 KGIKSFRVARKGDILDQLGSPTIIEMLYEHFHRSGIRVTMCYGEAEVPSEK
FT                 HRKEIISHLHDSLTGGHKGINQTYQKIREWYYWPGMRNDVQDYIRRCANCQ
FT                 EQKIERFKTREPMIITDTPIEAFDKVSIDTVGKLKMTPRGNCHLLTMQCNL
FT                 TKYLIAIPIKNLHATTIADALAKYLICQFGAPRNQFLVEYS"
XX
SQ   Sequence 15196 BP; 5924 A; 2879 C; 2696 G; 3697 T; 0 other;
     gattatttag ccgagattct tgtgccgaca cgatctaagt tttattctct cttgtccaac        60
     tcttgatttt tgcatgaata tctaaaaatt aatatattga attcgaataa atttcgaata       120
     aaaactaaaa attaaaatca gtgtccgcgt cctaaaagaa aagtttaaaa attaaattaa       180
     ttgtgaagtg aaacaagagt acgcgaagtt attaaaagaa aaagaaagag aaattccttt       240
     cggagtagaa gcacgcgtta tactcgcgac aaaggcgggt gtccgatttc gaactgcgcg       300
     caacaaagtt gagagtatcg cttgggagct tggcgtcgcg tcatcagagc ctttgtgccg       360
     gtccaacgcg cgtggagagt taaggaggcg gccatcttgc gagcttcggt tttcccaaat       420
     tcgaaatcac tcgttgcttt gttcatgttc gttcaacctg atgagaagaa aaacgtgtta       480
     gtaaaatatt cgaatcgaaa agaaaaatta tcgaggatct aaatttcaaa agaagaaatt       540
     ttcaaatctt caaaaatttg ctgaaaataa aatcatttta gtcaaaagca tattaatgct       600
     caaaaatttg gacaaaagca actttgcaat tttcaaaaaa aaaaggaacg aaatcattgc       660
     ttgtgaatgg accccaaatg ataatgacta aattgtatat gattttaata taaaaaaaga       720
     tatatatttc atgaacatat aaaaatttat ataatactgc tctagtgctg aaattcgatt       780
     ttcacagcaa aggtgaaggt tgactgttca ggaccagatg tattcgctcc attctataaa       840
     aggaaaatca aaattggtat cagaggttat caggaaagaa cgagtgcgac tgacaacaaa       900
     ttggtaaagt cgcactcatt gtttgaactt gtgaaaagaa atagaatatc aaaaacgcac       960
     tttgaagtat ttgtgcgagt ccctttttat gcatctgtac actaaaaagt taagttaaga      1020
     taattagata tgtatggcat ttgaacattt ttctgtgagt agtgttaatt tgaagaccac      1080
     gtcattctac gatacttcaa aaaggagaaa agtaaacaaa ttagcctcac cagcatttga      1140
     gaacgtgaaa aggttaagaa aacacgttaa aacaggacca tttaactttt gttgttcaac      1200
     aaatgtaatc aaacactcag tttcaaattg ttcattacta atacacaaac aaacactttt      1260
     tactttcact atcatttata aaaaggacaa atgttaaaac gcgtcgaagt tagtttcatt      1320
     tgcaaacact tgtagaaaac aaaataaaag cagatacact aaaagaaaca ctcatctggt      1380
     ttattcggct ttgtaacatt gttgatcact gcgtaaaatc aaagaaatca aaacgttgat      1440
     gtcgatcgtg gaagtttcaa ccagtaaatt cagtttggcc ccgtgaacaa catttattgc      1500
     acaatttcct cgactctaga aggagcaaat aagtcgtaaa tacattgagt aatcgtttta      1560
     atacacaatg ttcccacagt tagaaagtag aatcagaatt gtaaaagcaa gtttgaaaag      1620
     gaatttttat cacatggctt aataatcaat tcagagaaag gaaattttac acggatacac      1680
     ttaatgaatt gtttttaacg tatgttttaa tctattgtca atatacttta acatcaaggt      1740
     cagaaaatta acaattttaa taattttaaa cgaatacttg caaatgaaca aaaatctaac      1800
     ataaatagca ttgtttatgt caaagtcaac ctgtataact tattcaagca atataaaaag      1860
     caaaattaca atatttaagg aaatgaagcg tgtggcaata ctcaaaactt tatacttgcg      1920
     tgcatttttc tgagtcgttg caggtgaaaa gaggccattg agaaacttgc gccatcctag      1980
     aataagtaaa aagttattta acacaaaaca acaagctcaa gtatcatgca aatgatttat      2040
     gtttgaataa attgtcagga aaacttatct aattagtgag cagcaactgg ttgtactgct      2100
     tggggtagag agtcctgggc ccacatttat atttccactt tttgccaata aacaccttcc      2160
     gaaaatcact gtcacatgta aaggacacac tcgcgaacca ttagattata cgtgcgcact      2220
     attttcaccg cgatttaata acaataattg aaggagaaag tacgcgacgc gacgcgggtg      2280
     aggttagcca ttgcagcata gcagccgacg gcacgtgttt gttcagagcg aacgcgggcg      2340
     cagacgcatg cgtgcgagcg tggttactag gcgcggctag ggactttaca gcggtgcgag      2400
     attaggcgca cgcaactgac gcggtcgagt cggagtagag tcaagaagta gagagagcgc      2460
     gcggcagcca tcttgagtgg gcgcggaatt agaataatta aaacgaaaga ttatcatttt      2520
     taagagctct acaacaataa taatcattaa ttattaacat agattagaga tcacgcttgt      2580
     ttgacctttt ttgcaaataa ataatttttt ttattttatt ttattatttt atcaagagaa      2640
     attaactcct taggaagtaa caattgttgg tttagggttt tattaattaa actttttgta      2700
     gatttaagaa caatattaaa atatcctttt gtttttggaa taatacttca ttattaattc      2760
     ggctttgatc aagaggtact taattatttt gattatttta attatttttg ataaacatat      2820
     taataattgt ttagaattcc agtttcgttt ttttttatcg tgtttatcta attcttttta      2880
     tgtttaacaa aattaaataa aaccgagtga ttaaatcaga ccgactcttc atatacaatc      2940
     acgtaagaac tttgaaattt ttgttaaatt attgcaacac acttaatttc ttttctcgct      3000
     aattttcacg tcatatgcca aaattcgatt atttaactca atctgctcaa tcaagattta      3060
     cattcatttt taaataaaca attaaatgtc atcgataatt tttagaattt taggaattct      3120
     aacttctatt aggctaattg gtaacgttta agtttttttt tttggtactg gtttacggtt      3180
     ttgaatttaa ttattaagat atagctatct gattttcctt tgagtataaa aatcagacaa      3240
     gttattttta ggataaaggt tatgataatt tgaaaggttt taggttaaat ttacttttga      3300
     aactttcatt atgatttgcg tgaattttta tcaaaacatt atttttaccc cttttacgag      3360
     cattacaccc cattagcgaa gaaaagttta ttacccaata aacccctttt gtgagcatta      3420
     caccccatta gcgaagaata gtttattacc caataaaccc cttttatgag atacgaaacc      3480
     ttagtaattt tgttttgttt tgttttggtt catacatttt gtatgtttcc gaggcactaa      3540
     cccttttgaa agttttcttt ccttttgaat cctaaagtga aatcttaaaa aaaagggaga      3600
     acaaaaacaa aagtgatatt ggcgacaagt gagagtggtg gcataaatta ggcaaaattc      3660
     tacagttaat taaaagtaaa tgaagcaaca agaagaaaat caaagtaacc gaaagcatac      3720
     taaataactc aaggtattat aagagtacaa gagaatcaat cgacgatagg agtgattatc      3780
     taggttatct agaaggcaca tagtacttat tcgagatgac ggggaacgcc tcaaacaatg      3840
     atgattcagc taatggagga gcaccagatg cgagcatgct attaatgagc accatgacaa      3900
     acagctttgc actcatgaat tgcataagcg gcattcaagt tttgatggaa aaaagaatct      3960
     tcgagactac atacaagatt tgacgaacgc cagcgagtta gtcaatgacc cgattaagct      4020
     gcaagtctta caacacgctc tacataaaat aacgggatca gcaaagaaaa gtttaaacaa      4080
     taaaacaata aaaagtgtag aagatttgat acaacattta aagcaaagat ttggacccgg      4140
     aagaaatttc agttactata ataataagat acagaacgtg agaatgagag aacagaacac      4200
     agtaggcgat ttttatgatg taataaacgt gcttctgagc agtgctaaga atgctttgaa      4260
     ggaagaaaaa gtagaagaat tcaaaaatga aatgatggca ccattggaaa ctttagcagt      4320
     ggacatattt attaaaggtt tacctgcaaa tttggctgag cgagtagatt acagtaaacc      4380
     caatgatttg cgagaagctt atgaagaagc agtacgatta gaaatcagga tggaagctaa      4440
     aataatccca gattcaagac catactgaga tagaggccga tattacaaca atcaagacaa      4500
     ttataatgga ttcgatcaca agactggaag atactatgat gcaccaccgt atcctgacag      4560
     gagaaatgac actaactggc gcaataacca accgcaacat aatgatcaga cccaaagagg      4620
     taatttaaac taccaagagg ctcgccacga ccccagtata gcgagccaaa accaaggtta      4680
     cccgagacaa aaccaaatgc atcaaatgca gagtcaaggt acaaatcaag tccaaaacca      4740
     acagatgccc agaaacacgg atcaacagca ttatcaacaa cagctacagg catacaacga      4800
     gaacaaaaat gcgaacccaa cgaatccgag caacaatcag tcgaaagcac cagtaatggc      4860
     aatcttgtcg aggccagaga agtatcgaga atatggttca caaactgtaa aggacctcaa      4920
     aatgttaatt gggaggacga caaggccaca gcagtgagga taagaatacc agttggaacc      4980
     actaaaccat gggtgggatt catgattgat aatggagcca tagtaaactt aattaaagca      5040
     agtgtattgg atgatgacat gcccatctgt actgctgacg ctagagagtt aggcgaaatc      5100
     acaaaccaaa ctgtgaagat gtacgcatca atatacctag acatcaaagg aaccccagtg      5160
     aaatttcaaa tggtatcgga cgacttccca attccatttg atgggatgtt aggacgaaac      5220
     tacctaaaga aagaagaagc tgtaatatct tattacaaga acgcgttaat gataagcgga      5280
     gatgtaatgc accccatacc atttattgaa catgaagagg aacataatcc gagaaatatt      5340
     aaaagaggat ataagtgtaa acaaacaaat gaagtgctaa aagtagaatc tactcaaagt      5400
     ggaaaaagtg aatctatgaa ccaaaatgat gaaaatataa ccgatcaaat tggaggtacc      5460
     gtaaagcaca taatcaaagc cagaacccga caagtgatcc aaatcaatct gataaaaacc      5520
     gaactaaaag aaggatacat accgagaata gatgtgggaa acaaacatct atttcaagga      5580
     gaaggtgtag taaccaatgt aaataatact tgcaaaatta tggccatcaa tacgagtgag      5640
     gaagatgtca tcatagaagt ggatccaaaa gaacttatac catttgacac aggaccagat      5700
     ttcagtgagt ttaatggcga catgattgtg gaccaaataa agagactaga gagagtaaaa      5760
     gaagcaatca ggagagatca tttaaatcga aaagaattgg acatagttga tcggattatc      5820
     gaagactacc tggaccgatt tttacttaca ggagacaaac ttccatgcac ggatatgatt      5880
     gaacaccata tacatctaga aaacgacgta cccatcaaca ccaagcaata taggcatcct      5940
     ccgcagcata agcaagttgt aagggacagc gtagaaaaga aactaagata taaaatcata      6000
     agagaatcca attcaccttg taactcacca atatggatcg taccaaagaa acccgacagt      6060
     catgggaatc taagatggcg gatgatgatt gattttagag aattaaataa gaaaacaatt      6120
     agagacgcat acccattgcc aaacatcgca gatatcatgg accaattggg aggagcaacg      6180
     tacttttcta tcttcgattt agcaagcgga tttcaacaaa taccaatagc acccgaagac      6240
     tgttacaaca ctgctttcac gccaattaat ggacattatg agtacaccag aatgccagaa      6300
     ggtctgaaaa atgccacagc gacctttcaa aaactaatgg aaaaggtact gagaagactt      6360
     cagaacattg aaatgcttgt atatttagac gacatcattg tttatagcaa ggatctgcaa      6420
     gaacatggaa gcagaattcg caacctcatg caaagactaa gagaagcgaa attagttcta      6480
     caacccgaca aaattgaatt cttcagaaaa gaagtgggct tcttaggtca cataatcagt      6540
     gccagaggcg tggaaccaaa tccagagaaa gttgcagcca tcgccaaatt agctacacct      6600
     aaaagcgcaa agaatataag gaaagtactt ggaatgtttg gctattattg aaagtacatt      6660
     aatgattttg caaaaattgc aaaaccactg aatgatctat tgaaaaagaa tgttaagttt      6720
     gagtggaccg aaaaatgcga agagagcttt gaaaaattaa aacagtgcct catggaggaa      6780
     tccatactac aatttcctga cttcaacaga gagagagaat tcactcacaa ttggagccgt      6840
     tctaagccaa gagaaagatg gattcgatca ccccgtgcaa tatctatcga gagcattaaa      6900
     caaagcggaa agaaactact ccactacaga aaaagagtgt ttagctgtat tatacgcgct      6960
     acatcaattc agaccatatt tattatgtcg caaatttacc ttggtcagtg atcatgaatc      7020
     attaaattgg atgcatacta gaaaggacac tggacaaaga ttaatgagat ggatgtttag      7080
     attcaccggt tacgaataca catttaaata caaaccaggc aaactgaaca agaatgctga      7140
     tgccttgtcg agacatcctc cagaaatgac cgaaaaggaa ataaatgaaa atctaccaaa      7200
     aataaaggtc atgattatag atgaaaagaa aaaacagaac gggaataaag ccaaaagtaa      7260
     tgcttcaact gatggaacaa tctttcgaaa cagagctcac tcagcatctg aaaggactac      7320
     ggcaccacgg ggaagaggga gaccagtagg agcgaaaaca aacaagaatg caccaaaatt      7380
     gaatcatagc gtgatagcac agagaacgag agcgaaacgc atacagatac caagttcagt      7440
     aggacaattt taaacaaaga agtacaacca aaacattcaa aaccatcggt ccaaagaaac      7500
     ccgtacaacc agaagcgtca accaaggttg aagaatcacc aacagaaatt acctctgtca      7560
     agcccagaga gttgccagaa agttcatcca acatagattc agacacttct atgacagtga      7620
     attacgagtg gaagacccag aaacatcaga ggatgaaaag caaaaaatac cagaagatga      7680
     aacattctct tcagaggaca actaagacaa gactataagt aatatagcca ttgagttgag      7740
     cgcagtagaa ggatctcaaa ctgaagaaac cactgatgaa gactctatgg aaaacctgtc      7800
     cataaaaaac actctgacaa aacaagaagt ggaagaggct agtagaaaat ttgaagagag      7860
     tttgagaaga tatgaaatgg ataaaagaat ggataccagc gaatcaggga ctgaaatagc      7920
     catacagtta aaattaccct cacacttttc agaggatgat aatgtaccag acgacatgcg      7980
     tgaatccctg tacctgtcgg atccaagatt cgaaaatgag actgacgtga acaacgtgtg      8040
     aagaaaaggt gttcaaaatc taataaaacg agcacgggga aagttacaag agacaccagg      8100
     ccaagaaaat acgggagatg aatcagatgt cgacagtgtc acatacatta taccaccacc      8160
     aataagaaaa accttatctg tcacgcctac cataacaagc gatagtccca cagccaacag      8220
     tacacctcga aactaactca agaacaaaag aaaactagga gtgctgagcg agatagaagc      8280
     cgaagaaggg taaatcatag acataaggtt ttccaaacta cctgaaccag caatgccatt      8340
     ccttatacct acaccaccgg acttggaacc actaaataaa agtcgtggtt cccaccaaca      8400
     ccatgaggaa tctgacaatg ctttaaccca tataacagca aaaatgatac gagctcctca      8460
     caacataatc actgttagag aatgtctcac acacaagagg gacaatattg tgaatttctt      8520
     atcagcggat tgtgacaaca cgtggtccgt cgccagactg ctagtagaaa cagaagccat      8580
     cgatctaatg aaaataaaga atcagaaacc aaagtcagga caagtgctag ttactccttt      8640
     taagaagcat cacatattta cggtgatagt gaaagacaaa tacttcaata ccatcaaaat      8700
     gccgaatctg catgaagcac tcatcaacct aaaacaaata ctcgtagaga aaggcatcaa      8760
     aagctttcga gtggccagaa aaggagatat cttggaccaa ctaggatctc caaccatcat      8820
     agaaatgctc tatgaacact ttcacagaag tgggataaga gtgaccatgt gctatggcga      8880
     ggcagaagta ccatctgaaa agcacagaaa agagataatc agccacctcc atgatagtct      8940
     aacgggagga cataaaggaa ttaaccaaac ttatcaaaag ataagagaat ggtactattg      9000
     gcccggaatg aggaacgacg ttcaggacta catcaggcgg tgtgcgaatt gtcaagaaca      9060
     gaaaatagaa cgatttaaga caagagaacc aatgatcatc acggacacac caatagaagc      9120
     tttcgacaag gtgtcaattg ataccgtagg aaaacttaaa atgacaccaa gaggaaattg      9180
     ccacttgtta acgatgcagt gcaatctaac aaagtacctt atagcaatac ctatcaaaaa      9240
     tctgcacgca actacgattg cagatgcatt ggcgaaatat ctcatttgtc aattcggagc      9300
     cccgaggaac cagtttcttg tcgaatatag ttgaatctct actaaagtta tttaaaataa      9360
     accacttaac aacctcggga tatagacctc aaacaaatgg gtcactagaa acaagtcacg      9420
     ctccgctcat agaattcatc agaatatatc atgagaaata tgatgattgt gatcacctaa      9480
     caccatttgc aaccttcaca tataatacta gcatacacgc ggcaaccaac tttacccctt      9540
     tcgaactggt ttatgggagg gtagcgtgtt ttcccttaag aataccatct gacgaaaaat      9600
     taagaaccta taatgtttac atgcgagatc tagtactaag gttagaggag atgacacttt      9660
     tagcaagcga aacccaaata gctaacaaag tcaaaacaaa agcgaggtat gacaaaaagg      9720
     ttagaacgtt taagggcaaa gtgggcggat atgccaggtt aattaatgaa ccccgagtca      9780
     gtaaatttga tgaatacaga aacaaaccct tgaaaatcat tgaattcgtt ggcaggaaaa      9840
     acgtaatttt agaatatcct aatggcaaaa gaattcgaaa acacattgat aaattaaaac      9900
     atgtagagga cgactctgat accaattctg attaattaat cgcaataagt gtaaataaat      9960
     tgtaaataat atatatatat atatatatat atatataact aaattttatg aacccccact     10020
     aactcacatc taaatttgca ggatgaataa attaaatacg atcatacttt ttaatataat     10080
     aacaatggtt cgaagtcaat tcccatatca aatggaccca ttgaacccga accccggcat     10140
     ctacttcgag agagtggacg tcatgaggac aaagagtgca aactggaaga ttcaaatcta     10200
     catcgacgtg ggtgcattaa aacacggcag cattaaaaac ttgtgacata aggtatggaa     10260
     ctagtgcaaa aacctaatgg aaatatttag aaaatgacca atcctggcta tactcagttg     10320
     tcaaaccaga acaaatgcga atttcatgca cgaaccaagg agacacaaaa ataaaactgg     10380
     agaaagccgg aataatacga ctctcacgaa cgtgcgttgg gaggaccaaa gacagcatga     10440
     tatttggaca agaaaccaaa tccagtcgaa ccacatattt gtataagctc gaaattgatc     10500
     taaaaataca tgacatgtac cccattctaa atgaaaagga ccaaaatctt gaccacaatg     10560
     caccccaaag cattgacata attcgaccta aatctgattt taatcaagcc aaacccttaa     10620
     aacaaatgat agaaaaatta agtgaattga aagaacacac aaggcgagaa tataaaacaa     10680
     atacactctt atatagtagt ctaactttcc aactagtaat gatagcaagc atcatagcat     10740
     taatagtggg aatgaaatgc ggaatgatga taccctgccc aaaattaaat aaacaaacat     10800
     ataaagtacc tcaaactaac gagcccaatc gcgataaccc cataatcgaa acgaacctaa     10860
     ccgaaacctc tagtacttct aaaacgaaat ttaataaatt aagcaaatcc aaatcatccc     10920
     taatagaaac acaatttaaa aatgaagcgg aatgcaatta ttaacatata aatgtatatg     10980
     caccaaacct taacaacaca tcccctaata cccaaaaata tatttataaa atatatttac     11040
     agaaagtagg aagatgacga cgtcaaccac aagcgtgtca atattctgcg acatgcaagt     11100
     accagtttgg accgttgtgc gagaatttga acaagttggg aaaccatggt gcatttttac     11160
     cgaaaaacac cgaacagacc ccggaagcaa aaagatcaat ataacttatg atacagtaat     11220
     ggagaccatg cgagccaaag acttaaaaac catactcata agagaaaata agttcggaag     11280
     accagctaga gcagcaccga taccaataag aagaccccta ctcaatgaga acaaccctac     11340
     tccagaattt cacccatact gcaagagaga tatcgatgtg agcctgtatg aattacatga     11400
     ccaaatttgt aagaaacaag ccaaatggcc aattgccaga accctatggc agcttcctta     11460
     gccgaaacag caacacctca aaatgtcccc gtgctaacca aaatcagaaa ggaagctaag     11520
     gcggaagtaa ttcagcaaga agtaccaaca ttaagcaaca tcgtcaagcc ataactacca     11580
     gaactaccag agttaccaaa gataccaaca tcaaataaca ccatagaagt cggaccggaa     11640
     caagacacca ccatagatca agaaaaacgt ttaatttttg aaattaactc aactaattct     11700
     tatttcataa cacgcgttga aaacaaaaat atccccaaaa atgtcttgga aaaaatggat     11760
     gtagatgata gatctaaaga ataaataaag aaaaatccca tcgtaatata aaaacagtcg     11820
     ttcctttatc acaaatctaa caaacaaccc aaccatacat tcacacacaa acacaataca     11880
     agcattaaac aaacacaata gaaaggggaa cattaatgat gacaatatgt gagtcacaaa     11940
     tgaccatatt aactgaaatg tccccgttaa ttctatcaac aaaggtttaa aaagttgaaa     12000
     cctaactcat acaactcaca gaaacacaaa atgttttatc tccacatact tggatgtagt     12060
     caactcttgc atagcgttga accatatgca acaatatcct ttaaatcaag ctgaaaccta     12120
     actcacataa cccactgaaa cataaattgt tctgccacca catacgtgga tgtagaattt     12180
     ttcttttcct ctattcaact cacacattca gacatgaaat attgttgttt cttgataagc     12240
     catggacaac agcagccttt aggtcaaacc cacaaactaa atctcctgct cgctaaatag     12300
     agcaatcaag gaaataagtg aataaggccc tttttctctt gctgttagtg gacctgttct     12360
     gctacgtctc ttgaatttat tttctttctc ataactcaac ctaaaatcca cacacacacg     12420
     aataaaacat aaatgatgac cagcgtttcc acaggactga tatctctcat aaatacaaat     12480
     tatcctaccg tacgctataa cataatacct acaccacccg atccctataa tcaaaaatct     12540
     tgttttctat ttgaattaaa aataaaatgg acctcaataa actcctaatg ataaacagac     12600
     aaaatgtata acccctaaaa caaataaaca ttgcatgacc aaatatgtca gaccctaaaa     12660
     caatatctta cattacaaca tgcaacgata ccttctatct ttcattcctc tttgttacag     12720
     gaaaatggac cataacaaaa tagacatctt ggacgttacg gacatgggaa attccaaagt     12780
     cctcataaaa ttcaaaggac aaaaagaaga cgccatgaac agcttcatga cacatggacc     12840
     atgcgtaatc gctttcacac caacagccac accaaacatg tatatagcaa acatcgagta     12900
     cgcaaaagaa gagaataaga tcagggtgat taaaacatac acaaagtcaa aatcacaaag     12960
     cataatggag aaaatgggct acatagaagg caagggctta ggcaaagatc tacaaggtag     13020
     aacggaccca gtcaaagccg taccaaatga atacagacag ggcttaggtg ctaccaacct     13080
     aaattattac tcggtccaca atgacacaaa ttttgtcatt gaacaagaac aaggaccacc     13140
     aaccatcata gaagaaccag gagaggtaat gagggtcagc aaaatcagtg aaaaatccat     13200
     atcaataagc ataaggggaa acccagacga cataaaagca aacttaaaac aatttggacc     13260
     atgtgaaata gagaaagttt atacggacca acaaggccac accaaactag tagtgagata     13320
     ccagatccct ctgcataaca agaaagcagt ggagtatgca acagcaataa taaaaaaaaa     13380
     accatagaat aaccaatacc agatatccct acgcagacaa caccaggagc agcaataaac     13440
     ataccactgg tccttccgat attaccactg ttaccaccag cagttcgatg accgctattc     13500
     gcaacgtcat taacaacatc attaccagca cgaccacaga aatagccaag cgtaaaacca     13560
     ataccgatgc cagaaataat aacaggacca ctggatgaca cgacagggct aagattctgt     13620
     gcccaggtac cttttggcat gaactctgaa accttcggaa ggatatttgc tgtatttggc     13680
     cctctggacc acataacttt tgtcctacac aaaaagcagg aacataacac accactcagg     13740
     aagtacctag ccttcgtgca gtacttcgac aagggggatg ccaagaaagc aatagaccat     13800
     tgcagtgaaa gattcaaaca aaaatgggca tcgccacggc acctcaagaa gaacgagaca     13860
     cagtacagaa aaaaacacag tgtatgcggc agaatgagcg attatagaaa caaagaacac     13920
     catgcttatg taaaatacaa aatggagaaa cactaaaaca tcacaaagag tgtggcaaat     13980
     acatacaata ccaacacatg gaagctcaca aacaacattg cataagggtc caagagaacc     14040
     caaaagaaga aaatatgacc acagaagacg aattaataag cagggaccat tcaacatcac     14100
     ctgagtaatc atagtggagg aaatagacct agaggaacta ccacaaggac atgatgaaac     14160
     aaacccacta ggaacaacaa tggaccaaaa tattaatcca gtcagtgatc cagaacgaat     14220
     actctgggta cgggaaaatg accgacaaat caacgaggaa gaagaagaca gaatgagcat     14280
     ctatagttac acgcgattat cacaataaaa ttttatttca ttactttttt ttatctttct     14340
     aaattttttc tattaattca ctttgtacgt ggcacaaaaa aagaaaacta gggggaccca     14400
     aagaaataaa caatatattt ttgtactttt acattacacc aagtttaatt gtaaccctta     14460
     tgtatgcata taaatagaat ataaaacata aaattgtaca ctaacaaaat gaagtattta     14520
     gacataagac aactaattag cgcagatgat caaaagtact aacaatttag catataaggc     14580
     atctaatgta gggccacgga ccacagcaac aaaagtaagt ggaatattag ttaaaaccca     14640
     cgtccaatat caataaataa tactaaggga acagaatgat tcgaaaatcc ctgcaaccac     14700
     ccacccgaac ataaaagcaa aacatttaaa acccatagaa gtctcgtcaa tggcgttttc     14760
     tctagccaaa atcccatcaa acaaacacac tagacgtgca tgtcaagcaa aacaatcata     14820
     ggctagacat attaaagaac catgagcgaa agcattaaca catgataaaa catacataga     14880
     tcatgtgctg agccataact cacaagacat taacgacatt atttaaaagg gaagagaaac     14940
     agcacaatag attggagacc agaacaaata acaataaata aaaaaaattt gcaataacaa     15000
     aaagtaaatt aaagcccttt gcccctctga ataaatggaa tcattctgac aaaatttctt     15060
     tttttctttc actcaaccac atcgaacaca agtttctttt tcttcttttc cacttacagg     15120
     accacgtacc caaaaataac ggcctcagtt gtttctcggg aacgagaaac gttctcaagg     15180
     gggggatgat gttacg                                                     15196
//
ID   Gypsy7-NVi_LTR repbase;    DNA;    INV; 410 BP.
XX
AC   AAZX01000892;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7-NVi;
KW   Gypsy7-NVi_I; Gypsy7-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-410
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1138-1138 (2007).
XX
DR   Genome; AAZX01000892; Positions    1497    1088.
XX
SQ   Sequence 410 BP; 115 A; 102 C; 103 G; 90 T; 0 other;
     tgacaacttt cccgattcgc atttgaaata ataatttcaa atgtaggatc gagaaagttc        60
     tacacgtata aagggtacag cgagactcat ggccacaaaa gtatcaagtg gctaagaatc       120
     tcgctaacct aaaagacttt ccccggccaa cggctagagg cgcacgtgcg gagctacgtt       180
     gcagtttcgg cgcggcaact gattggccag gcccccgtaa ggtctaaatg agtggcaaca       240
     agcgtcgaca ctgtaacgcg gctaagggaa gtaagctggc gacgtcgtgg gaggtccaga       300
     acctctttcg agcgctctcg aaccacgctg ctctctcact ccgtgatcaa gcaacgaagc       360
     cggcggaccc attagaaaga tttcttttag agcttacatt ttgtagaaca                  410
//
ID   GYPSY70-I_AG repbase;    DNA;    INV; 4858 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY70-I_AG is an internal portion of retrotransposon GYPSY70_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; CsRn1 lineage; GYPSY70-I_AG; GYPSY70-LTR_AG;
KW   Gypsy clade; RNase-H; integrase GYPSY70_AG;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4858
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY70_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 179-179 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY70_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and Integrase is phylogenetically grouped
CC   with representatives of the CsRn1 lineage of other organisms.
CC   GYPSY48_AG, GYPSY49_AG, GYPSY50_AG, GYPSY51_AG, GYPSY52_AG,
CC   and GYPSY53_AG are other members of this same lineage in
CC   Anopheles gambiae. The GYPSY70-I_AG consensus was
CC   reconstructed after multiple alignment of 4 copies. The
CC   consensus encodes the 315-aa GYPSY70_AG1p gag-like polyprotein
CC   (pos. 694-1638) and the 1064?aa GYPSY70_AG2p pol-like
CC   polyprotein (pos. 1642-4833). The sequence of the LTRs
CC   flanking GYPSY70-I_AG is deposited as GYPSY70-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           694..1638
FT                 /product="GYPSY70_AG1p"
FT                 /translation="MMQHSPERQPAPQAATHDAPPVNTERTGTSQATNAMT
FT                 AAETASDPRVEAAQAVRLSVPEMDLHNLPAYFCALEHWFAATGITAKMDHK
FT                 RYHVLMAQIPLRVYNEIQPIIENVPATERYNYIKRNILQHFGESQRSRLHR
FT                 LLYGMDLGDRKPSQLLAEMHRASSDTLASTLLTDLWINKLPPHVQSAVVAA
FT                 PGSVTEKAAVADTMVECLSASNNASVHHAVAGVRTTPNDFEQRISRQVDEL
FT                 TQQLNDFITECRNRDQRQSRPRPRPPVSSRVGTEPSEGECYYHRRYGTAAR
FT                 TCRQPCSFPAPVSQRVGQPSSSA"
FT   CDS           1642..4833
FT                 /product="GYPSY70_AG2p"
FT                 /translation="GYAGDIGSQVATISPVSSRLMVIDRRTNQRYLIDTGA
FT                 DVSVLPKPANYTPPTPSTMRLFAANGTPIMVFGESLRTLDFSLRRPFVWNF
FT                 IIADVSSAIIGADFLRHYHLLVDLRQRCLVDAQTNLRVPGLPDTTRQTAVK
FT                 VCDANSPMADLLNEFPTLITNSPGVRMQSEVVHRIETTGPPTFARSRRLPP
FT                 DKYQAAKAEFDSLVQLGICRPSSSSWASPLHMVKKADGSWRPCGDYRSLNA
FT                 RTTPDRYPLPYLQDFTMQLGGKTVFSKVDLQKAYHQISIHPEDIPKTAIIT
FT                 PFGLFEYVTMPFGLRNAAQTFQRLIHDVLRGLNFVFPYIDDIIVASKTPEE
FT                 HREHLRLLFARLTQHGLTINLAKCEFAQPEISFLGHRVTSEGILPLEEKVD
FT                 TIRQFPKPNTVMELKRFLAMINFYRRFIPHALRAQGPLLEMIPGNKRRDKS
FT                 SLTWTPATDTAFEDCKRQLAQATMLVHPVPSAELSLWCDASDFAAGAALHQ
FT                 VIDGQMQPLGFFSRKFDNAQRRYSTYDRELAAVYLAVRYFRHQLEGRSFHI
FT                 YTDHKPLVYAFRQSLDKASPRQARHLDFIGQFTTDIRHVEGQENVTADLLS
FT                 RIEPIQSSTSIDYEKLAEDQTRDPELADILSGKTRTDLVLQRVPIPGSSMA
FT                 LYCDCPAGIIRPYVTKPFRQQLLRAVHQMSHPGAKTTTKLMTERFVWLNIR
FT                 RDTRDFVRHCLACQATKVQRHTRSPLGRYPVPDARFAHINLDLVGPFPISN
FT                 GHRYCLTIIDRFTRWPEAIPIPDITSTTVAAALLSGWIARFGVPSFITTDQ
FT                 GRQFESTLFAELNQLLGIKHLRTTAYHPQANGLIERWHRTLKAAICTKNTA
FT                 HWTDHLPIILLGLRTAYKDDIKASPAELVYGSTLKIPAEFFNSSPMTSLPD
FT                 TTEFTKSLKYAMNTIRPTQTAWHDKATPFVHSDLRTCSHVFVRNDTVRPAL
FT                 TPPYQGPYKVLRRSDKSFEVLINERATNISIDRLKPCYSLQQPEPVTQLTP
FT                 PSAAEYTPPPPALPPPASPPSAPPPPASPPPTEPSPPNDFSTGVTRSQRRV
FT                 IIPVRYR"
XX
SQ   Sequence 4858 BP; 1140 A; 1534 C; 1152 G; 1032 T; 0 other;
     actggtgacc ccgacgtgat tcccgagatt ccccgatcga cagattcatc atcggcccgc        60
     tttcgccttt ccacgctacg cggttcccgt tcgcccaggt ccgtcaacgc cgcgagtaaa       120
     atcggtacgt gtagtgtgtg tatcaagcgt cgccgagtgt cgtgcctttt tttttcgcaa       180
     ggacaaaaac cgtgttcgat cgtgtttccg cgcgtgcata aaagtgtcgc gagtgcccta       240
     cacgcccgcg tgtgcataat cgtcgcgagt gccctacacg cccgtgtgtg cgtaatcgtc       300
     gcgtgtgtcc ttcacgcccg tgtgtgcgta atcgtcgcgt gtgtccttca cgcccgtgtg       360
     tgcgtaagtg tcgcgagtgt cccgtcccga gtgcattgtt ctccatacgc accgacgtgt       420
     ttcccttgca tcgtgaaccc gcatcgctac agaggatcga gccgcgggtt acatcgccgt       480
     ccccaaagag aaggaagagc aacgatccca tcgttccagc ccggacaaaa gaaagcgctc       540
     cttgtaaagc cgttgactgc cgccattttg cacgttcgac gccattgaca gccgccattt       600
     ttgtctcgct gaagtaagcc caactcccga ctaccacgtc acttcttttg ttctcgcttc       660
     tcgtgaaacc acgtgctcgc aagcgaataa aagatgatgc aacatagtcc agaacgtcaa       720
     cccgctcccc aagcggcaac gcacgatgca cctccggtga acacggagag aactggcacg       780
     tcccaagcaa caaatgccat gacagcagca gaaacggcaa gtgatcctcg agtggaagca       840
     gcacaggccg ttcgactgag tgtacccgaa atggacctgc acaatttgcc tgcgtacttt       900
     tgtgcactgg agcattggtt cgccgcgacc ggaatcaccg ccaaaatgga ccataagcgc       960
     taccacgtat tgatggccca aattcctctt cgagtgtata acgagatcca gccgataatc      1020
     gagaatgtac ctgcaacgga acggtacaat tacatcaagc ggaacatcct ccagcatttc      1080
     ggggaatccc agcgtagccg cctccatcgt ctcctatacg gcatggactt aggggaccgc      1140
     aagccatccc agctgctagc tgaaatgcac cgagcctcca gcgacacgtt ggccagtacg      1200
     ctcctcaccg acctttggat caacaagctt ccgccacatg tgcaatcggc cgtcgttgct      1260
     gcacccggaa gtgtaactga gaaagctgcc gtcgccgata ctatggtgga gtgcctgtcc      1320
     gcatccaaca acgccagtgt gcaccatgcc gtagccgggg tgcgcaccac acccaacgat      1380
     ttcgagcaac gcatttcgcg ccaggtggac gaactcacac agcaacttaa cgacttcatc      1440
     acagagtgtc gtaaccgtga ccaacgccaa agtcgaccgc gcccacgtcc accagtgtca      1500
     tctcgtgtcg gtacagaacc atctgaagga gagtgctact accatcgacg ttacgggaca      1560
     gccgcccgga cctgccgcca gccctgttcg tttccagccc ctgtcagcca gcgcgtcggc      1620
     cagccgtcgt cttcagcctg aggatacgct ggagatatcg gatcgcaggt ggctaccatc      1680
     tcacctgtga gcagtcggtt gatggtgatc gaccgacgaa ccaaccagcg ttacctgatc      1740
     gatactggtg ccgatgtctc cgtgttaccg aagccagcca actacacccc cccgacgccg      1800
     tccaccatgc gactgtttgc agccaacggt actccgatca tggtatttgg tgagtccctc      1860
     cgtacacttg attttagttt acgccgcccc tttgtgtgga attttattat cgcggacgta      1920
     agctctgcta tcattggagc ggactttctt cgccattacc atcttttagt agaccttcga      1980
     cagcgctgtt tggtggatgc ccaaaccaac ctacgtgtgc caggacttcc ggataccact      2040
     cgacaaaccg ccgtcaaggt gtgcgacgca aattcaccga tggccgacct gctgaacgag      2100
     tttcctacac tcatcacaaa ctcaccgggt gtgcggatgc aatccgaggt ggtacatcgt      2160
     atcgaaacaa cgggtcctcc aactttcgcc cgttcgcgtc gtcttccacc cgacaagtac      2220
     caagcagcca aagcagaatt cgactcactc gtgcagctag gaatttgcag accgtccagt      2280
     agcagttggg ccagcccgct gcatatggtt aaaaaggctg atggttcctg gcgtccgtgc      2340
     ggtgattatc ggtccctcaa cgcgcgtacc acccctgacc ggtatccatt gccttatcta      2400
     caagacttca cgatgcaact gggaggaaaa accgttttct caaaggtgga tctacagaaa      2460
     gcctaccacc agatctccat ccatccagag gacattccga agacagcgat catcactcct      2520
     ttcggcctat ttgagtacgt gacgatgccc ttcggattac gcaatgcggc gcagacgttc      2580
     caacggctaa tccacgatgt gctacgcggc ttgaactttg tgtttcccta tatcgacgac      2640
     attatagtgg cctcgaagac accagaagaa catcgcgaac acctgcgact gctatttgct      2700
     cgcctcacgc agcacggttt gaccatcaac cttgcgaagt gcgagtttgc ccagcctgag      2760
     atctccttcc tgggacaccg tgttacgtct gaaggcatcc taccactgga agagaaagtc      2820
     gacaccatac gtcagttccc gaagccaaac actgtcatgg agcttaagcg atttttggcg      2880
     atgatcaact tctacaggcg cttcatcccc cacgcgctgc gagcacaagg accgctcctg      2940
     gagatgattc ccggcaacaa acggcgagat aagtcatcgc tgacgtggac cccagctacc      3000
     gacacggcct ttgaggactg caaacggcaa cttgcacagg ctaccatgct ggtacaccct      3060
     gtaccatccg ccgaactatc actgtggtgt gatgcttccg atttcgctgc cggcgccgcc      3120
     ttacatcagg tcatcgacgg gcagatgcag ccgctcggtt tcttctcccg aaagttcgac      3180
     aacgcacagc gccgttattc cacgtacgat cgcgaactag cagctgttta cttggccgtc      3240
     cggtattttc gtcatcagtt ggaaggacgt tctttccata tttacacgga tcataaacct      3300
     ctggtttatg ctttccgcca gtcgctggat aaggcctctc ctagacaagc acggcacctt      3360
     gactttattg gccagttcac caccgacatc cgacatgttg aaggccagga aaacgtcact      3420
     gccgacttgc tgtcccgaat cgaacccatc cagtcatcaa catccatcga ctacgagaaa      3480
     ttggccgaag accagacccg agatcccgag ctcgccgaca tcctcagcgg gaagacaagg      3540
     acggacctgg tccttcaacg agttccaata cctggcagca gcatggcttt gtactgcgat      3600
     tgccccgccg gcatcattcg tccgtatgtc acgaaaccgt ttcgtcaaca actactacgc      3660
     gcggttcatc agatgagtca tcccggagcg aaaactacca cgaagctgat gacggagaga      3720
     ttcgtctggc tgaacatccg ccgagatacg cgagatttcg tccgccactg cttagcgtgt      3780
     caggctacga aggtgcaacg ccatacccgc agccctctag gacgctaccc ggtaccggat      3840
     gctaggttcg cacacatcaa cctggacctg gttggaccgt tcccgatcag caatggacat      3900
     cgttactgcc tcaccatcat cgatcgcttc acacgctggc cagaagctat tcccatccct      3960
     gacataacat caacgactgt agccgcagcc ctactcagtg gatggatagc tcgctttggc      4020
     gttccatcgt tcatcaccac ggatcaaggc aggcagttcg agtcgacgct tttcgcggag      4080
     ctgaaccagt tactgggcat caaacatcta cgcacaacgg cttatcatcc gcaggccaac      4140
     ggcttgatag aacgatggca ccgtacgctg aaggcagcta tttgtaccaa aaacaccgct      4200
     cattggaccg accaccttcc catcatactc cttggattgc gcacagcgta caaagacgac      4260
     atcaaagctt cgccagcaga gctggtttat ggaagcacgc taaagatccc agcggagttt      4320
     ttcaatagca gcccgatgac cagcctgcca gacaccaccg agttcaccaa gtcgcttaag      4380
     tatgccatga acaccattcg cccaacacaa acggcctggc atgacaaagc aacacccttc      4440
     gtccattcgg atcttcggac atgcagccac gtcttcgtcc ggaatgacac cgtccgccca      4500
     gcccttaccc cgccgtacca agggccttac aaggtgctta ggcgtagtga caagtcattc      4560
     gaagtcctga tcaacgagag ggcaactaac atctctattg accgcctgaa accgtgctac      4620
     tcactccagc aacccgagcc agtgacacag cttacgccac catctgcagc agagtatacg      4680
     ccaccaccac cagcgctacc accaccagct tcaccaccat cagcgccacc accaccagct      4740
     tcaccaccac cgacagagcc gtcacctccg aacgacttct cgaccggagt tacgcgttca      4800
     cagcgacgtg tcatcatccc cgttcgttac cggtaactcc agtctagcag gggagcac        4858
//
ID   GYPSY70-LTR_AG repbase;    DNA;    INV; 355 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY70-LTR_AG is an LTR of retrotransposon GYPSY70_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY70_AG; CsRn1 lineage; GYPSY70-I_AG; GYPSY70-LTR_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-355
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY70_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 180-180 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY70-LTR is a long terminal repeat of GYPSY70_AG (its
CC   internal portion is deposited as GYPSY70-I_AG).
XX
SQ   Sequence 355 BP; 107 A; 96 C; 60 G; 92 T; 0 other;
     tgtggcgacc acgttatagc ctcaccacag tccggagctg acgtcaaccg tcaattcaaa        60
     atatcgggca ctctaattcg aacaccctaa ttcaagcacc ctaattcgag caaccttatt       120
     cgagcaccct aattcgagca atagttacca acttagccag actaaactat ttcccgttaa       180
     aagattataa aagccgtcgt tcccaccacg cgttctcttc tcttttcgtt ctcatccgct       240
     agtggacgtg ctcccgtaac tgcgtaaccc gtgataaaaa acattgtaaa aaattgtatt       300
     ttgtgacatc ttgggaatcc aaataaaaaa gtggtctacc cacgaggtag ccaaa            355
//
ID   GYPSY72-I_AG repbase;    DNA;    INV; 4102 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY72-I_AG is an internal portion of retrotransposon GYPSY72_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY72-I_AG; GYPSY72-LTR_AG; Gypsy clade;
KW   MDG3 lineage; RNase-H; integrase GYPSY72_AG;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4102
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY72_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 183-183 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY72_AG is a family of Gypsy-like LTR retrotransposons that,
CC   according to the amino acid sequence of its reverse
CC   transcriptase, RNase and integrase is phylogenetically grouped
CC   with representatives of the MDG3 lineage of other organisms.
CC   GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG, GYPSY34_AG,
CC   GYPSY35_AG, GYPSY36_AG, GYPSY37_AG, GYPSY38_AG and GYPSY71_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY72-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1341-aa
CC   GYPSY72_AGP gag-pol like polyprotein (pos.35-4057). The
CC   sequence of the LTRs flanking GYPSY72-I_AG is deposited as
CC   GYPSY72-LTR_AG.
CC   GYPSY72_AGP:
CC   MDIPASIEELMEQFTRVGLVKRCEALGLDTSGSKEELAGRIVEHSEGGNQDTTRVGDYLDAVEG
CC   SSTSSRESVDREARGVSIHFKDVQDYLPTFSGKEDVCAWVIEFETSSKLFKWHDLHKLIYAKRV
CC   LQGAAKAFVRSIPEVSSWIDLKHALVEEFEEKVSSATVHESLRRRKKKSDESCSEYIYAMCEIG
CC   KKGHVDEQSLCEYIVQGIDDDPMNKTCLIAAKTIKQLKSQMRTYEKLAEQIREQRSKRQIPAKN
CC   PDSNKTKYAPPASMKCRSCGKTGHIVKDCPNKAAGPVCFACGKPGHRARECSERPHFSGNANLI
CC   SSDKGGMITMKIGEKELNTLFDTGSQFNLLSEVAQNTVSCLNVTPTTMCFNGFGGKRTAALGKI
CC   ETNVTIDQHIYQGIQFYIVPASSMGYDAVIGRDALKDMEATVTQQGIKVRPIKNNAEESECVSE
CC   VLLCEPDKITVPPKFRETIASIVSEYEEARCEGKSVQSPVKLTIVPNERIVPFRHTPGRLAYPE
CC   EKAVDDQVEEWLTKGIVRPSTSDFASRVVVVKKKDGSNRVCVDFRKLNAMILKDGFPIPVIDEV
CC   LQKLQNAKWFSVMDLENGFFHVPIDEASKKYTAFVTKKGFYEFNRAPFGLCNSPAVFMRFVNHV
CC   FLNLINEGVLEIYMDDLIVYAESEEECLLKTKRVLLTAAAYGLAVKWNKCKFMQSSVFFLGHYV
CC   ENGTISPSPEKISAVTKFSVPRNVKAVQAFLGLTGFFRKFVKNYAQIARPLTNLLRNDAVFVMG
CC   HEEMHAFNLLKEILASEPVLRLYERKAETEVHTDASKEGYGAVLLQRFDGKLHPVAFWSKKTTD
CC   AEAKKHSYVLEAKAVYLAVKKFRHYLLGMRFKLVTDCIAFKQTLQKSEVPREVLSWVVYLQDFT
CC   FDTEHRPGTRLKHVDCLSRYPVRVMIVNDDVTAKIGEAQKKDETIKAIREILASRPYESYKLKG
CC   GLVFKTIDGIDLLVIPKVMEKEIISIEHNNGHFATQKTVHGLKQKYWIPHLEQKVKQVIDNCVR
CC   CIMYNKKLGNKEGYLHPIEKGDRPLQTLHVDHVGPMDATGKQYKYILTVVDGFSKFVWLYPTKT
CC   TNAQETIRKLENWTAIFGSPERIVSDRGAAFTSLVFADFIKENGIEHVVCTTGVPRGNGQAERV
CC   NRTVIAALAKLSAEDSTKWFKWVDQVQQALNSHFNASTKKTPFKVMFGVEMRHIVTGELVKLIQ
CC   EEMYERFEEERQEIRLEAKEAIGRAQLEYKKQYDKKRKPEPGYSVGDLVAIKRTQFVAGKKLAS
CC   EFLGPYEITQVNRNGRFKVKKAAECEGPNITTTSADNMKLWTYTVNNEDLEAYDSDESSEI.
XX
SQ   Sequence 4102 BP; 1335 A; 709 C; 1089 G; 969 T; 0 other;
     tttggtgtca gaagtgggat aacgcaattt tgctatggat atcccggcga gtatcgaaga        60
     gttgatggag caatttaccc gtgtcggctt agtaaaaagg tgtgaggcct tagggctaga       120
     cacaagcggt tcgaaggagg aattagctgg cagaatagtg gagcacagtg aaggtggaaa       180
     tcaggacacc acgagggtgg gtgattattt ggatgcggta gaagggtcaa gcacgtcgtc       240
     acgagagagc gtagatcgtg aggcccgggg cgtgtccatt cacttcaaag atgtgcagga       300
     ttatttgcct acattctccg gaaaggaaga cgtatgcgca tgggtgatcg agtttgagac       360
     aagtagcaaa ctgttcaaat ggcatgatct tcacaagctc atttacgcaa aacgagttct       420
     ccagggcgca gccaaggctt ttgttagaag cattccggaa gtatcgtcgt ggatcgattt       480
     gaagcacgcg cttgtggaag aattcgagga gaaagtgtcc agtgcaacgg tacacgaatc       540
     acttcgacgt agaaaaaaga agtcggatga atcatgttca gaatatatct acgctatgtg       600
     cgaaatcggg aaaaagggac atgtcgatga acaatccctt tgtgagtaca tagtacaagg       660
     aatagacgat gatccaatga ataaaacctg tttgatcgct gcaaaaacga ttaaacaact       720
     gaaaagccaa atgcgaactt atgagaaatt ggcagagcaa attcgcgagc aacgatctaa       780
     gcgtcaaatt cctgctaaga accctgacag taataaaaca aaatatgcac ctccagccag       840
     tatgaaatgc cgtagctgcg gtaaaacggg acatatcgtc aaagattgcc caaacaaagc       900
     agccgggcca gtttgttttg cgtgtggcaa gccagggcac cgagccaggg agtgcagtga       960
     aagaccccat ttttcgggga acgcaaattt gatcagcagc gacaaaggag gaatgatcac      1020
     gatgaagatc ggtgaaaaag aattgaacac tttgttcgac acgggtagcc agtttaacct      1080
     tttgtccgag gtagcacaaa acacagtaag ttgcttgaac gtcacaccaa caacaatgtg      1140
     tttcaacggg ttcggtggaa aacgaaccgc agcgctgggc aaaattgaaa cgaacgtgac      1200
     aatcgatcaa cacatttatc aggggataca gttttatatc gtgcccgcca gcagcatggg      1260
     atacgacgca gtcattgggc gagacgcgtt gaaagacatg gaagcaacgg taacacaaca      1320
     gggtataaaa gtacgcccca ttaagaataa cgcggaagag agtgagtgtg ttagtgaagt      1380
     gttgttgtgc gagccggata aaataactgt gccacccaag tttcgtgaaa caattgcgag      1440
     tattgtgagt gaatatgaag aagcacgttg tgaaggtaag agtgttcaaa gtccagtgaa      1500
     gttaacaata gtaccgaacg agcgcattgt tccttttcga cacacgccag ggcgattggc      1560
     atacccagaa gaaaaagcgg ttgacgatca ggtagaagaa tggttaacaa aaggaattgt      1620
     gcgaccgtcg acgtccgatt ttgccagtcg cgtagtggtg gtaaaaaaaa aggacggcag      1680
     caatcgcgtg tgcgtggatt ttaggaaact aaacgcgatg atattaaaag atgggtttcc      1740
     aatcccggtg atcgacgaag tgttgcagaa gctccagaat gcaaagtggt tttcagtgat      1800
     ggacttggaa aacggttttt tccatgttcc gatcgatgaa gcgagcaaaa aatacactgc      1860
     gtttgtaacg aaaaagggtt tttacgagtt caatcgagcg ccttttgggt tgtgcaactc      1920
     gcctgcagtt tttatgcgtt ttgtaaacca tgtgtttcta aatcttatca acgaaggagt      1980
     gttagaaatc tatatggacg atttgatcgt gtacgcagaa tcggaggaag aatgtttgtt      2040
     aaaaacgaaa cgagtgcttt taacggcagc ggcgtacggg ctcgctgtga agtggaataa      2100
     gtgtaagttt atgcagtcgt cagtgttttt cttaggacac tacgttgaaa acggtacaat      2160
     ttcgccaagt ccggaaaaga tcagtgcggt gaccaagttt agcgtgccaa gaaacgtgaa      2220
     agctgtgcag gcatttcttg ggttgaccgg attcttcagg aagttcgtga aaaattacgc      2280
     gcagattgct cgacctctta ccaatctgtt gcgtaacgat gcggtgttcg tgatgggtca      2340
     tgaagagatg cacgctttta atctgctgaa ggagattttg gcgagtgaac cggtgttgcg      2400
     gctgtacgag aggaaagcgg agacggaagt gcatacagac gcgtcgaagg aagggtatgg      2460
     tgcggtgttg ctccagcgtt ttgacggaaa gctgcacccg gtagcgtttt ggagtaagaa      2520
     gacgacggat gcggaagcga aaaagcatag ttacgttttg gaagcgaaag cggtttactt      2580
     agcagtaaaa aagtttcgtc attatttgtt ggggatgcga tttaaattag tgactgattg      2640
     tattgcattt aagcaaacgt tgcaaaaatc ggaagtgcct cgggaagtgt tgtcgtgggt      2700
     agtatattta caagacttta cttttgatac ggaacatcgg ccaggaacca gattgaaaca      2760
     tgtagattgt ttaagccgtt atcctgtgcg tgtaatgata gtgaacgatg atgtaacagc      2820
     gaaaataggt gaagcgcaaa agaaagatga aactatcaaa gctatacgag agatacttgc      2880
     tagcaggccc tacgaatctt ataaattaaa aggcggatta gtttttaaaa ctattgacgg      2940
     tattgattta ttagttatac ctaaagtgat ggaaaaggaa ataattagta ttgagcataa      3000
     taacggacat ttcgccactc agaaaactgt tcatgggttg aagcaaaagt actggatacc      3060
     tcatttggaa caaaaagtga agcaagtaat tgataactgc gtacggtgca ttatgtacaa      3120
     taaaaagtta gggaataaag aaggatattt gcatcccatt gagaaaggag atagaccttt      3180
     gcaaacattg catgtagatc atgtcggacc catggatgca acaggaaaac aatacaaata      3240
     tattctcaca gtggtggacg gattttcaaa atttgtatgg ctgtacccca ctaaaacaac      3300
     taatgctcag gaaacgatta ggaagctaga aaattggaca gcgatttttg gaagtccaga      3360
     acgtatagtg agtgatagag gagcagcctt tacttcacta gtttttgccg attttataaa      3420
     agaaaatgga atagaacatg tagtgtgtac caccggtgtg ccaaggggaa acggtcaggc      3480
     agaaagggta aaccgaacag taattgcagc tttagcaaaa ctttcagcgg aagattcaac      3540
     gaaatggttc aaatgggttg accaagtcca gcaagctttg aattctcact ttaatgcatc      3600
     aactaagaaa acacctttta aggtcatgtt tggagtagaa atgagacata ttgtaacagg      3660
     ggaattggtg aaactaatac aggaggaaat gtacgaaaga tttgaggaag aacgacagga      3720
     aataagatta gaagcgaaag aagcaatcgg aagggctcag ttagaatata aaaagcagta      3780
     cgataaaaaa cgaaagccag agccagggta tagtgtaggc gatctagtag cgataaaacg      3840
     aacacagttt gtggcaggca aaaaattggc aagcgaattt ctagggccat acgaaattac      3900
     acaggtgaac cgaaacggac gtttcaaggt caagaaagct gcagaatgcg aagggccaaa      3960
     tatcaccaca accagtgcag acaatatgaa gctttggact tatacggtca acaatgagga      4020
     tttagaagca tacgatagcg atgaaagcag tgaaatatag tgcctggcag gggctgcaaa      4080
     tcaggcgtca ggaaaggccg at                                               4102
//
ID   GYPSY72-LTR_AG repbase;    DNA;    INV; 227 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY72-LTR_AG is an LTR of retrotransposon GYPSY72_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY72_AG; GYPSY72-I_AG; GYPSY72-LTR_AG; Gypsy clade;
KW   MDG3 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-227
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY72_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 184-184 (2004).
XX
DR   [1] (Consensus)
XX
CC   GYPSY72-LTR is a long terminal repeat of GYPSY72_AG (its
CC   internal portion is deposited as GYPSY72-I_AG).
XX
SQ   Sequence 227 BP; 75 A; 31 C; 59 G; 62 T; 0 other;
     tgttaggttt aatttttgct aggacgtgcc gctgtacaaa cgtaccgtag taaaatgtac        60
     cacaggcaaa gtagaaagaa acagagggag acaagagtga gacagcaagc gaccaacaaa       120
     atgggtataa aaggagatgg atttggaata aagaattaga attgttttgg ctgccagagg       180
     aacgagtgtc tgtgttgagc gtttttttta cttttcgatt ctttaca                     227
//
ID   GYPSY7_I    repbase;    DNA;    INV; 4984 BP.
XX
AC   AE003788;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   GYPSY7_I is an internal portion of GYPSY7 endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY7_I; GYPSY7_LTR; endogenous retrovirus;
KW   env; gag; pol; internal portion.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4984
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY7, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(8), 28-28 (2002).
XX
DR   Genbank; AE003788; Positions   33817   28834.
XX
CC   GYPSY7_I is an internal portion of GYPSY7 endogenous retrovirus.
CC   GYPSY7's long terminal repeat LTR is listed in Repbase Update as
CC   GYPSY7_LTR. GYPSY7 is relatively old endogenous retrovirus;
CC   it is flanked by 10% divergent LTRs. Target site
CC   duplication is TACA. GYPSY7 is most close to BURDOC, their
CC   internal portions are 73% identical with each other.
XX
SQ   Sequence 4984 BP; 1815 A; 964 C; 957 G; 1248 T; 0 other;
     ggcgcccaac attcacctac atttcccgag acaacaaaac tacgttcaac cgacttcaac        60
     tgcggatttt ctttcaacat caacaatcaa catcaataca ataacaaata ttaattaata       120
     aaaaaaggat taacttaact tctgtaagta caacgcatat tggttactta ataagatctc       180
     taactttcat aacgaccttt aaattaacga aggttattga tggttattaa tgacaaatag       240
     aagaagacga agttttaggc gacttagagt aaagtttgaa taggtggcga gagcatttac       300
     aaaaccaaag tgtgggaggt gggagagaag aaaattgatg gttaaagaag aataaagctt       360
     gcgaaatgaa cttatcggca gatcatttga aagcaatagt ggatagtgcc gttgctggtg       420
     cgattgctag tcaaaaataa atatttgata aacagctgca ataaataagt gcgcgtatag       480
     aaaaaattac agtgaacacc ccagaagtgg aaacttataa agatgctgaa attgtaccag       540
     gtgtaagatg tactgaacca ttagacatag taaagtcttt gccagatttt gacggaaaaa       600
     gtgaaaccta tgtgtcatgg agaaaagctg cccatgtcgc ttttaaagat ttcgagaatt       660
     acgagggcag ttcaacatac catcaagcac ttggcataat gcgaaaataa aaaactcggc       720
     aaacactgtg ctggcgtagt ttaacactcc gctgaatttc aaggcaatga taaatcgtct       780
     cgattttaca tacgccgaca aaaggctagt atatttaata gagcaggagt tatcgacgtt       840
     aagagagggc gacatggcaa tgactgagtt ttacgacgaa gttgaaaaaa aacttactct       900
     ccttacaaac aagacaataa tgacatgcga taccacttta gcgattaacg aaaaatacag       960
     gtcagacgcg tgtattcata aggggaacat aaaagtcttt gagagagact taccaacagc      1020
     tctcgctcta gcacaggaag tcgaatcaaa ccacgaacgc taccaatttg cactgaacta      1080
     ttctagaagc ttaggagaag gccagaaggc tgagaaaaag caaactgata gggattggca      1140
     tacgaacgtt catcaatagg gcataaaccc tcattttagt aaacggaagc cagtgcccaa      1200
     ccctggcaat caggcaagtc agacacgaca cacatgatca gttaatggac actgacgtat      1260
     caaagagaac tattagaacg ggtcaatacc aacccgggca gccaccttcc ttgcatcagg      1320
     aaagcgtacc cttacatcaa aacacttggc cggctcagca acaaaacaca cggcaataca      1380
     ggcaaactag ctatgatgca acaaaaagac cctatagtgg aactggctaa cagcaccaaa      1440
     gcaaaaaaga attaaccatc tagcttacga agaagattta gctgatacag aaaattacga      1500
     acaggaagca gaagtggctg tggaggaatg ggaggacgaa cttgcatttc atgatagtgt      1560
     tcatttttta gacttaagtc cctgttacca ttcattgaaa ggaaaattgc agggagaacc      1620
     ataaaactct tgattggcac cgggtcgtcg aaaaactaca tacagcctct tgcagaacta      1680
     aaatatataa tgccggtaca aaaagaattt aaagtaaaat cgcttcacgg ttacaacaca      1740
     ataaaactta aatgcctagt taagatattc gataaaaacg ttccattttt cattcttcca      1800
     gacctctcaa gcttcgacgc cataataggt cttaccacat tgacacagac aaatgcaata      1860
     ttggacctaa aaaataaaac tttaaaaact ggtaatacag tttaaccaat taaattcata      1920
     aggtgtaaca gcgttaattt ctccgatatt aaggacatca tcgtacctaa gccaattgct      1980
     gataaatttc acactatgct ggcagacaga gtgggtgtct tcgcagagcc ggaaaaagca      2040
     ctgccttaca atacacatat tgttgccacc atacgtaccc aagataatca accaatatac      2100
     acaagacttt acccttaccc catgagtgtg gcagattttg tgaataagga gatgaaagca      2160
     ttgttaaaag acggcataat ccgacccgca cgatcaccat ataatagtcc ggtttgggta      2220
     gtcgataaaa aaggcacaga tgatcagggg tgtagacata aaagaatggt tatagatttt      2280
     cgaaagctta actttaagac cgtggacgac aaatatccga taccaaatat aacatgcata      2340
     ctgtcaaatc tggggaaagc caggtttttc agcacgttag accctaaatc aggattccat      2400
     caaatcctac tcgccgaaaa ggatagagag aaaacagcct tttaaattgc aaacggcaag      2460
     tacgagtttt gctgacttcc cttcggccta aaaaatccac ctagtatact tcaacgtgcc      2520
     atagacgatg tacttaggga tgaaataaga aagtcaatta tttttttaga acgactagag      2580
     gatcatgtgg atcatattcg gtgggaactg gatagattat tcgaagctaa cagagagttt      2640
     ctaggaaaaa atctcaattt ttaaagaaag cgtcgaatat ttaggattca tagtatctag      2700
     cgggggtatt gaaaccaatc cttataaggc agaggctatt aaaacctatt aagaacccac      2760
     aaattttttc aacgtgagat cctgtttggg actagcgagt tatcgcagtt ttataaagga      2820
     ctttgcatct atagccagac cattgagtga cattcttaaa ggcgaaaatg cccaagtttc      2880
     agccagtcgc tctaagaaga ttcaagttag ccacgacact aaacaacgtt ctgcctttga      2940
     aaaacttaag aatatcctta catccgaaaa cgtaatgctg ctttatccag actataaaaa      3000
     gcccttcgac ttgacaacgg acgcctcggc actgggcctc ggagcggttt tatcccaagg      3060
     cggcaagcct attacaatga tatctaggac tttaaaggat agagagctca gtttcgcaac      3120
     aaacgaacac gaactcctag ctatagaaag agaaagagtt ccttaaaaag tttaaggaac      3180
     tatctgtatg acgtcaaaaa tctgaacatt cacactgatc accagccgct aatttttgcc      3240
     gtttcagaca aaaacccaaa cgcagaaatt aaaaggtgga aggcgtttat agacgaacat      3300
     ttctataaat gtctctaaca ttttctataa ggcagggaag gaaaacttcg ttgctgatgc      3360
     actatctaga caagccattc atgctgttga aagcgacgct cggtcagata tatcgacaat      3420
     tcatagcgaa atttcacttt catataccat tgaaacagtc gacaagccag tcaattgttt      3480
     cggaaatcag atagtcttag aagaaggcac aacatattgt actcgtacgt ttgttatatt      3540
     tagaaataac tcgagacatt tgatacaatt cgcaaacagg gaaactttgg ttggcagaat      3600
     ccgtgacgtg gttaaacagg atgtaacgaa tgcaatatac tgcgaactgc ccgtattggc      3660
     attcatacaa aacagacttg tggaagagtt tcctagaacg acatttcgac atactaaaaa      3720
     aattgtcaac gacatttata acaaagacga acaaagggaa atagtaacca tcgagcatag      3780
     cagagcacat agggcagcac aggagaatgt aaaacagatt ttacaaaatt attttttttc      3840
     ccaaaatgtc acagttagta gccagtattg taagcgactg cttagtctgt acaaaagcca      3900
     aatacgaccg tcatcctcga aaacaagtcc ttgggaaaac acctattccc tcactaattg      3960
     gcgagacatt acatataaat attttctcca ctgacagaaa gttctccaaa ttcgcgatag      4020
     tgcaaccgat aggctctcga acaatagctg atatagaacc tgcaataatg cagctaatga      4080
     atttctatcc atgggtaaaa acaatttatt gtgacaacga accatctatg aactctcaat      4140
     ctatcaggtc actcttacta aaccgattca atgtaacagt ggagaatgca ccgccactcc      4200
     atagtatttc caatggacag gtggaaaggt ttcacagcaa attggtagag atagcacgat      4260
     gtttaaaact agaaagaggc ctagatgata cggtcaacct cttactccag gcagccattg      4320
     aacataataa acgaacgaac tgtcactaac aaaagaccga tcgacattat tcatgcaatg      4380
     cctcccgaac ttgcagaaga aataacaaat agaattgaca aagcacagga gatacagtta      4440
     aaaaggatga acgaatcaag gtcttttttt caggttggga aaacggtctt ggtaaaacaa      4500
     aataaacact taggaaataa aatcacccca cggtacaagg aggaaaagat tgatgcagat      4560
     atgggaacta atgtccttat aaatggaagg gtagtccata aagataatct acgctaggta      4620
     tctgttgttt aaataaataa ggatttggca attatttaat taaataaatc tttggcaagt      4680
     ctacttcccc agaagataga aaagaattcg aatccaaaaa ttggaaaaaa acctttacca      4740
     gtatttttca ataacaaaaa aaaagaaaaa aaaaaacaac aaacttaacc aattggcact      4800
     gtgcatagtt tcttaatata tttatattat atccaattat actagtcttt aatgtttgta      4860
     atttgtaatg aataaggcac ggtcatcgct ttagccatta taagaggtag ccggcaatgt      4920
     tatcgtcacc acacataaac cttctcaaga agtctgtgga cagtcttcgt cttagaaggg      4980
     gagg                                                                   4984
//
ID   GYPSY7_LTR  repbase;    DNA;    INV; 251 BP.
XX
AC   AE003788;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   GYPSY7_LTR is a long terminal repeat from GYPSY7 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY7_I; GYPSY7_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-251
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY7, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(8), 29-29 (2002).
XX
DR   Genbank; AE003788; Positions   34068   33818.
XX
CC   GYPSY7_LTR is a long terminal repeat from GYPSY7 endogenous
CC   retrovirus.
CC   GYPSY7's internal portion is listed in Repbase Update as
CC   GYPSY7_I.
XX
SQ   Sequence 251 BP; 95 A; 51 C; 51 G; 54 T; 0 other;
     agttaacaca ttcaacgagc agcaaagaga ggccaatgca agtactgaag ctttcacgat        60
     aagaggcgag cttttggctt gggatcaaag gcgagcttaa gaaataaggg aagagcgaat       120
     tggatcatcg aacgcgtcgg tcgtcgccat gcagacacat attattcaat aaacttacaa       180
     gctcaaatat aatccaaata taattcgtag gccatagaca cgacatccat aaaaacacaa       240
     atctattaac t                                                            251
//
ID   GYPSY8-I_AG repbase;    DNA;    INV; 5904 BP.
XX
AC   AAAB01008859.1;
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   GYPSY8-I_AG is an internal portion of the GYPSY8_AG LTR
DE   retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD;
KW   CLP protease; GYPSY8-I_AG; GYPSY8-LTR_AG; GYPSY8_AG; Gypsy clade;
KW   RETRO23_AG_LTR; aspartyl protease; integrase;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5904
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY8_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(5), 89-89 (2003).
XX
DR   Genbank; AAAB01008859.1; Positions 1735905 1730002.
XX
CC   GYPSY8_AG is a young family of Gypsy-like LTR retrotransposons.
CC   GYPSY8-I_AG, an internal portion of GYPSY8_AG, is flanked by
CC   identical GYPSY8-LTR_AG LTRs.
CC   The internal sequence encodes the GYPSY8_AG1p 369-aa protein
CC   (pos. 1088-2194), and the 1218-aa GYPSY8_AG2p pol-like protein
CC   (pos. 2203-5856), composed of the aspartyl protease (aa 9-159),
CC   reverse transcriptase (aa 313-486) and integrase domains (aa
CC   942-1100). GYPSY8_AGp1 is not homologous to gag-like proteins
CC   encoded by known Gypsy-like elements. This protein is similar
CC   remotely to the CLP proteases, although the significance of this
CC   similarity is low.
XX
FH   Key           Location/Qualifiers
FT   CDS           2203..5856
FT                 /product="GYPSY8_AG2p"
FT                 /translation="MTGIKTNNFIKVKLNIANGKNTTLVIDSGAEVSLFKA
FT                 SSLKKQIQLKKNKELTLIGITTDTMKTKGYTQATIHFGDKNVEHTFFIIKD
FT                 LPTQADGVLGMDFISKFQCDILFSTWMLQFRNGNDIIEHPVDDSINGIIEI
FT                 PPRSEVIRKLTLKPITEDSVIFSKEIKPGVFIGNTIISKTDPNIKLINTTE
FT                 STAFINTGTIRPQIEPLKNYEIFLANNYNTPERTRIIQDKVHIEQVPEIAK
FT                 RNLKNLIAEFSDIFCLENEPITTNNFYKQPIELMDNNPSYIPNYKQIHSQA
FT                 DEINQQVDKMLKNDIIEHSVSAYNSPILLVPKKSIDGSKKWRLVVDFRQLN
FT                 KKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIELEPASRRFTAFS
FT                 TPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLSPELAFVYIDDIIVTGCS
FT                 AQHHISNLSKVFNKLRKCNLKLNPEKCCFFKTEVTYLGHKITDKGIYPDDS
FT                 KYEIIEKFPVPKNANDARRFVAFCNYYRKFVQNFAKIAKPINNLIKKDVKF
FT                 DWTKECQEAFEKLKQSLLSPTILQYPDFTKQFIITTDASDTACGAVLSQIT
FT                 DGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAINYFKPYIYGRKFIVKT
FT                 DHRPLAYLFGMKNPTSKLTRMRLDLEEFDFDVQFLAGKANVAADALSRVVI
FT                 TSDELKAQIPTNIMLATTNNIQNLKSTILMVHTRAMVKQKEAKKVTPHKPI
FT                 DTRSDQPTMWTTDTPSKTRKLLKIRTSISDNNITFEVCNSTYKKVLGKVNA
FT                 KAEKNGSQALELALLNICKIANNYKNKKLAWSLHDQIFTQYSHQTLKEIAN
FT                 RVIDKYEFILFTPPRWVETEHDRLRIIHDYHMTPSGGHVGQFRLYRKIRDT
FT                 YTWKNMRNDIKNFINKCEACLVNKVNRHTKEQTVITTTPNKPFNVISIDTV
FT                 GPLTKTNNNYRYAITIQCDLTKYVVIIPIHNKEANTIAKALVENFILTFGT
FT                 FIELKSDQGLEYNNEILNKITEILQIKQTFSTAYHPQTIGALERNHRCLNE
FT                 YLRSFVNEHHDDWDDWIKFYEFVYNTTEHTDTGYTPYELIFGRKANLPQEI
FT                 YQNKIEPVYNVEQYYNEMKFKLQKSREIAQKNLVSSKENRQNILNKNTNSL
FT                 KLEIGDIVYLTNENRKKLDPVYIGPFTVTNIQEPNCTIIHKTTNKSSTVHK
FT                 NRLIKSKE"
FT   CDS           1088..2194
FT                 /product="GYPSY8_AG1p"
FT                 /translation="MITISDRIEILKHIFKKIQDPNQRTCTKTQLRIQAEE
FT                 TFKEIQKEIEKNKFKYTFNKLLEFSKISNALIHNIIAMSTSKTNDDSHNKT
FT                 SDCSTNSLEDKNTNLTLLTTNKLSFKLLAQTISAFLQLHKKSKMAFDLNSV
FT                 GFSVLTGMQPFEGKASELTKFIDTVNTVKSIISSSNSLIAINLLLTKLGKE
FT                 PRELFKELPKSFDEIIVTIKGRYTNTISVAKIYKQLCDRRKGKFENFNTFA
FT                 KSLNELADQLQTAYIQENMTPDIAKTLTQQNVIIKLKEAGISRDSQLILDI
FT                 KEFSSITDMLDTVKSYEGKNPPHEQNSRTTNFTPNANAFKAAHSRVMHTQI
FT                 QTNTPDKKEEEEGDRFLDDDQNQYPQ"
XX
SQ   Sequence 5904 BP; 2416 A; 1131 C; 933 G; 1424 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac aggcagaagt ataagcaaat tatttacaag        60
     taaaatgtga taagtacaac ggtaacgtaa aacgtaagtg tcgtgtgaca aaccaaaagt       120
     attgtgacca taaccggcat tcgacgggac gtgagaaaaa aaaaaagtgt caaatgtgca       180
     ttttttttta acgaaacatt caacaacgct gctggcacaa gtgacccata tgttataaat       240
     aataacggtg aaagaacagc cagaagcaag tgcagtgcag aaaaaaaaac aatatttagt       300
     gcaatgtagt gcaaaaggaa tgtcaaattg atgaacatca cagtgttgtg agaacctacc       360
     ccaatgtgta aaaacgtaac gcttatgcga tcgatttacc aagtagagta accttaaaat       420
     gggtaacgac gcatcaaacc ctaaagctaa tgttgatggt gataatgatc ttaccattat       480
     tcaaacacaa aatgttcatt cagagcagca tgaaacccat gaattaaaac tgaacattgt       540
     gctgatactt cttgctatca tactcatgca aaaagtaatt aaaaccattt tcaaaatatt       600
     gaaaactcta gcaaaacgtg atgcaatcaa taacatacaa ctgcctatat aatgtaactc       660
     attttggtaa tctatacgat tcgtggagca attgatatgg gacaataaag tgcatagcga       720
     aactacggtt cacaagcagc gattgaatga aacaaccttt cccaacgtgg aagacgaaaa       780
     tacaagacga gcccactgcc caatctggat tggcaggcaa gaatagacaa gtgtcccgac       840
     aagacatcga gcgacgactg atcgacgacg tcatcgtaga atatcgagta tgcaccaaat       900
     accgattaaa cacccagcac cggtatagat tcagcgtagc atcatcatca gtagcaacaa       960
     aatgcacgca gcatatccca ttaaggtatt gaaactttag aacataatca aatcaaatca      1020
     aatcaaagtt ttcaagctag gaaatgagtt ctataaaaag attacatgaa aacaattcaa      1080
     aacaggaatg attactataa gcgatagaat tgaaattttg aaacatatct ttaaaaaaat      1140
     acaggacccc aatcaaagga cttgtacgaa aacacaactc agaatacaag ccgaggaaac      1200
     atttaaagag attcaaaaag agatagaaaa aaataaattc aaatacacct ttaacaaact      1260
     attagaattt agtaaaattt ctaacgcact aattcataat atcattgcta tgagcacatc      1320
     aaaaaccaac gacgactcac ataacaagac atctgattgc tcaacaaata gcttagaaga      1380
     caaaaatacc aacttaacat tattgacaac caataagtta tcgttcaaac tcttagcaca      1440
     gaccatatca gcctttctac aactccataa aaaatctaaa atggctttcg atcttaatag      1500
     cgtagggttc tccgtactca cgggcatgca accgtttgag ggtaaagcat ccgaattgac      1560
     taaattcatc gatacagtca atacagtaaa aagtataatc agttcatcaa attcccttat      1620
     agcaatcaac ctcctactca caaaactagg aaaagaacct agggaattgt ttaaagaact      1680
     gcctaaatcc ttcgatgaga taattgttac catcaaagga aggtatacga ataccatctc      1740
     agtcgccaaa atttacaaac aattatgcga cagaagaaaa ggtaaatttg aaaattttaa      1800
     cacttttgca aagagcctca acgaattggc tgatcaactg caaacagcat atattcagga      1860
     aaacatgaca cccgacatag caaagacact aacacagcaa aacgtcataa taaaactaaa      1920
     agaagcaggt atcagtagag acagccaact aattttagac ataaaagagt tttcaagtat      1980
     caccgacatg ctggatacag tgaaaagtta tgaaggaaaa aacccgccac atgaacagaa      2040
     tagtcgcacc acaaacttta caccgaacgc aaatgcattc aaagcggcac acagcagggt      2100
     tatgcataca caaattcaaa ccaacacacc cgacaagaaa gaagaagagg aaggggatcg      2160
     ttttttagac gacgaccaaa accaataccc acagtagttt tgatgacagg gataaaaaca      2220
     aacaacttca taaaggttaa attgaacata gctaacggga aaaacacaac attggtcatt      2280
     gactccggag ctgaggtatc actttttaaa gcctcaagtt taaagaaaca aatccagtta      2340
     aagaaaaaca aggaactcac actcataggt atcacaacag atacaatgaa aacaaaggga      2400
     tacactcaag caaccattca ttttggtgac aaaaatgtcg agcatacatt ttttattata      2460
     aaagacctac caactcaagc agacggagta ttaggaatgg actttatcag taaattccaa      2520
     tgcgacatcc ttttttcgac ttggatgtta cagttccgta acggaaatga tatcattgaa      2580
     caccccgttg atgacagcat caatggaatt attgaaatac caccaagaag tgaggtaatt      2640
     cgcaaactca ctttaaaacc aataacagaa gattcagtaa ttttttctaa agaaataaaa      2700
     ccaggagtgt ttatcggtaa cacaataatt agcaaaactg atccaaacat caagcttatc      2760
     aacacaactg agtcaacagc ctttattaat acaggcacaa tcagaccaca aatagaacct      2820
     ttaaaaaatt atgaaatttt cttggcaaat aattacaata ccccagaaag aactagaata      2880
     attcaagata aagttcatat agaacaagta ccggaaatag caaaaagaaa tttaaaaaac      2940
     cttattgctg aattttcaga tatattttgt ctcgaaaatg agcctatcac aacaaataat      3000
     ttctacaaac aaccaataga actaatggac aacaacccat catacatacc taattataaa      3060
     caaatccatt cccaagcaga tgaaattaat caacaggtcg acaaaatgct gaaaaatgat      3120
     ataattgaac attcagtttc agcttataat tcgcccattc tcttagtccc gaaaaaatcg      3180
     attgacggaa gtaaaaagtg gcgattagta gttgacttca gacaactaaa taaaaaaatc      3240
     ctgccggata aatttcctct ccctagaata gatacaatat tggaccagtt aggtagagca      3300
     aaatatttta gcacacttga cttaatgtca gggttccacc aaattgagct agaaccagca      3360
     tcaagaagat tcactgcatt ttccacacca acaggtcatt atcaatttac gagaatgcct      3420
     tttggtttaa atataagccc aaatagtttt caacgtatga tggcaatagc tatggcagga      3480
     ttatcacctg agctagcatt tgtttacatc gacgatataa tcgttacagg gtgcagcgca      3540
     caacaccata taagtaactt aagtaaggtt tttaacaaat taagaaaatg caatcttaag      3600
     ttaaatccag aaaaatgctg cttctttaaa acagaagtaa cctatctagg tcacaaaata      3660
     acagacaaag gtatataccc ggatgactca aaatacgaaa taatagaaaa atttcctgta      3720
     cccaaaaatg caaatgatgc cagacgcttc gtagcatttt gtaattatta cagaaaattt      3780
     gtacaaaact ttgcaaaaat agctaaacct attaataacc ttattaaaaa ggacgtaaaa      3840
     tttgattgga ccaaagaatg tcaggaagct tttgaaaaac ttaaacaaag tttactctca      3900
     ccaacaatac tacaatatcc cgattttaca aaacagttca ttataacaac tgatgcatcg      3960
     gatacagcat gtggcgctgt attgtctcaa ataactgacg gaaacgattt accagtggca      4020
     tttgccagca aaagtttcac gccaggggag aaaaacaaac caataataga aaaagaactg      4080
     acagcgatcc attgggcaat caattacttt aaaccatata tatatggtcg aaaattcatt      4140
     gtaaaaacag accacagacc attagcatac ctatttggga tgaaaaatcc aacatctaag      4200
     ttaactcgta tgagattaga tctagaagaa tttgactttg acgtacagtt cttagcaggg      4260
     aaagcaaacg tagcagcgga cgcgttgtct agagtagtca ttacctcaga tgaacttaag      4320
     gctcaaatac caacaaacat aatgttagca acaactaaca atatacaaaa tcttaaatca      4380
     acaatcctca tggttcatac cagagcaatg gttaaacaaa aagaggctaa aaaagtaaca      4440
     cctcataaac ccatcgatac caggtctgat caaccaacga tgtggacaac ggatacacca      4500
     tccaaaacaa ggaagcttct aaaaattaga acaagcattt ccgacaacaa tataacattt      4560
     gaagtgtgca acagcactta caagaaagtc ctagggaaag ttaacgcgaa agcagaaaaa      4620
     aatggaagtc aagctttaga gcttgctctt ctaaacattt gcaaaatcgc caataactac      4680
     aaaaacaaaa agctagcttg gtctctacac gaccaaatat ttacacagta ctctcatcaa      4740
     acccttaaag aaatcgccaa cagagtgatt gacaagtatg aattcatact gtttacacca      4800
     cctaggtggg ttgaaacaga acatgatcgg ctaagaataa tccatgatta tcacatgacc      4860
     ccttcgggag gacacgtagg ccaattcaga ctttacagga aaataagaga tacttacacg      4920
     tggaaaaaca tgcgcaatga tatcaaaaat tttatcaata agtgtgaagc atgcttagtt      4980
     aataaggtaa acagacacac taaagaacag acagtaatta caacgacgcc taacaaacca      5040
     tttaacgtta tatctattga cacagttgga ccattgacaa agaccaataa caactacagg      5100
     tacgcaataa ctatacaatg tgacttgaca aaatatgttg taataatacc tattcacaat      5160
     aaagaagcaa acactattgc aaaagcatta gtagaaaatt tcatattaac atttggaact      5220
     tttatagagc ttaaatcaga tcaaggctta gaatacaata acgaaatcct taacaaaata      5280
     acagaaatct tacaaattaa acaaacgttc agtacagcat accatcctca aaccatagga      5340
     gcactagaaa gaaaccacag gtgtttaaat gaatatctta gaagctttgt aaatgagcac      5400
     catgatgact gggatgactg gattaaattt tacgaatttg tttataacac cacagaacac      5460
     acagacacag gttatacgcc ttacgaatta atttttggca gaaaagcaaa tctacctcaa      5520
     gaaatttacc aaaacaaaat agagccagta tataatgttg aacaatatta taatgaaatg      5580
     aaatttaaat tacagaaatc acgcgaaata gcacagaaaa accttgtgag ctctaaagaa      5640
     aataggcaaa atatactaaa taaaaatact aactccttaa aacttgagat aggcgacata      5700
     gtttacttaa caaatgaaaa taggaagaaa ttggatcccg tttatattgg accatttaca      5760
     gtaacaaata tacaagaacc aaactgcacc ataatacaca aaaccaccaa caaatcgtca      5820
     acagtacaca aaaacaggtt aattaaatca aaagaataac ttcaatcatt ttattattta      5880
     cgttattctc ctaaagggag gagg                                             5904
//
ID   Gypsy8-I_AP repbase;    DNA;    INV; 4162 BP.
XX
AC   Contig23376;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8AP;
KW   Gypsy8-I_AP; Gypsy8-LTR_AP.
XX
NM   Gypsy8-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4162
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 451-451 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [1462-1965] - Reverse transcriptase
CC   Positions [3089-3622] - Integrase core
CC   LTRs are 98% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..2853
FT                 /product="Gypsy8-I_AP_1p"
FT                 /translation="MDSKIPKEMNFNGNIEANWKNWKQRLSLYLLASNKNT
FT                 CSDETKTAILLTLLGEEGINIYNTFSGKKIHDDKNVPIFQKVISAFDEYCL
FT                 GKKNIIFERFNFLKYKRQHGQSLENFVTQLKLLAASCEYGELTDSIIRDQI
FT                 IINTSDVVLQEQLINKSDLSLEKTVEIIKQSENVKKQIEIINKEEKVDPEY
FT                 SHVDSIKGKNYTSNKNKVAQTNFKCSRCGIQHAPRSCPAFGKQCRKCAKPN
FT                 HFANVCRSNKMVQEVADAGAEEEYAANNSLFGVSEINVPQAHSIQQPWFEE
FT                 IKVENMFIRFKLDTGSQVNLLPLNIYKTLNVNKCWNRTTIKLEAYGGYKFM
FT                 PLGSIILKCVVNNIIAWVTFLIINNSDIPILSLEACEKFNLIKRHEQCISM
FT                 ITQCNNQKDKFLINNSSIFEGIGTFPGEHTIKINPNSQGSIKPARRLPQTL
FT                 YKDVQIELNKLLKHKIISKVEEPKEWASNLVIIRKPDKTLRLCIDPSELNK
FT                 SLKRENYLIPTFEEIRSKLINKKIFTVLDIKKGFWHVKLDSKSSDLCTFST
FT                 PFGYFKFNRLSFGIATAPEIFIKLNQKYFGDIDNDNIIIYFDDILIATTDE
FT                 TTHDEVLKKLVDRAKLLNIKFNKDKLQFKKTEIKYVGHIFNEQDVSPDPDK
FT                 IKAIVSLKEPTSRVELQRLIGMFNYLREFIPNMSKIISPLRELLKKDIIWV
FT                 WESRHSLALKELKNLVTTAPILTHFRPDKEITIQCDASKDGLGCCLLQDKK
FT                 PIAFASRSMSETEIAYAQIEKEFLSLIFACRKFHYYIFGRTINALTDHKPL
FT                 VSIMQKDIIKIPSNRLQKMRLKLLEYDIRLKYLPGKKMHIADLLSRDYMRE
FT                 NSTEEFDTSGTVHCINRFNNNNVCNIKSESELDPVLNKIIEYYFQGWPNRK
FT                 QIDKAVQLYYNLKKRNNY"
FT   CDS           2996..3970
FT                 /product="Gypsy8-I_AP_2p"
FT                 /translation="MSNEIEQFINNCMTCNKFQNSKKKSPLIPHEVSNYPY
FT                 EKVGADILSFEGMDYLVIVDFFSKWFDLIKLKFKTANEIIKKSKQIFSTHG
FT                 IPKTFIADNMPFNSSEFIAFSKTWNFTIVTSSPHHPQSNGLAERTVQTSKK
FT                 LLKKAREEGCDIESMLLEYRCTPIISLQASPAQLLFSRILRTKLPIANKLL
FT                 EPKLQNNIQTKIKVYQQKYKSNYDKTTNKNETQFKPNTNILIQNNKVWLPG
FT                 KVIAKANTPRSYFVKNNKGTIIRRNSKHLKNIKNNNVTEGSDEENIGVGTK
FT                 AENKPNKSVLGKKVLTRLIRVKKLPNRLKDCVL"
XX
SQ   Sequence 4162 BP; 1714 A; 646 C; 658 G; 1144 T; 0 other;
     gaattatata acatggcact gtggctaatc ttgtgtgtca agtacggagt cgattgttat        60
     aatttgtaaa tacacaacaa actcaaaatg gattcaaaaa taccaaagga aatgaatttc       120
     aacggcaaca ttgaagccaa ctggaaaaac tggaagcaac gactgtcgct atacctactc       180
     gcaagtaata aaaacacgtg ttcagacgaa acaaaaaccg cgatattact cacgttactt       240
     ggagaagaag gtatcaatat ttacaacaca tttagtggta agaaaatcca tgatgataag       300
     aatgttccaa tttttcaaaa agtaatttct gcattcgatg agtactgcct gggaaaaaaa       360
     aatattatat ttgagagatt taattttctg aaatataaaa gacaacacgg acagtctcta       420
     gaaaacttcg taacacaatt aaaattatta gcagcatcgt gtgagtatgg ggaactcacc       480
     gactcaatca taagagacca aattattatt aatacctcag atgttgttct tcaagagcag       540
     ttaatcaata agtcagacct atcattagaa aaaactgtag aaatcattaa acaatcagaa       600
     aatgtgaaaa aacaaattga aataataaac aaagaggaaa aagtagatcc agaatattcc       660
     catgtagatt ccataaaagg aaaaaactat acttcaaata aaaataaagt agcacaaaca       720
     aatttcaaat gcagcagatg tggcatacaa catgcaccaa gaagctgccc ggcctttggg       780
     aaacagtgca ggaagtgcgc taaacccaac catttcgcaa atgtatgccg ctcgaacaag       840
     atggttcaag aagtagcaga tgcaggagca gaggaagagt atgcagcgaa caacagcttg       900
     tttggggtca gtgaaatcaa cgtaccccag gcacatagta tccaacaacc atggttcgag       960
     gagatcaagg tagaaaatat gtttattaga tttaagttag acaccggctc tcaagttaac      1020
     ttattacctc tgaatatata taaaacactt aatgtaaata aatgttggaa cagaacaact      1080
     atcaaacttg aggcttatgg tggatataaa ttcatgccat taggctcaat aatattaaag      1140
     tgtgtagtta ataatataat agcatgggtg acctttttaa taataaataa tagtgatata      1200
     ccaatactga gtctagaggc atgtgaaaaa tttaatttaa tcaaaagaca cgaacagtgt      1260
     atcagcatga tcacacagtg caataaccaa aaagacaagt ttttaataaa taatagtagt      1320
     atttttgaag ggattggaac attcccgggt gaacatacaa ttaaaataaa tcccaatagt      1380
     caagggtcta tcaaacctgc gaggagatta cctcaaacac tctataaaga tgtacagata      1440
     gaacttaata aattactaaa acataaaatt atatctaaag ttgaggaacc taaagaatgg      1500
     gctagcaatc ttgtgataat aaggaaacca gataaaacac tgagactttg tatagatcca      1560
     tcagaactca ataagtcatt aaaacgagaa aactacctga tcccaacctt tgaagaaatt      1620
     cgctctaaac taataaataa aaaaatattc accgtcttag acattaaaaa aggattttgg      1680
     catgtcaaac ttgatagtaa atcatcagac ctatgtacat tcagtacacc gtttggatat      1740
     ttcaaattta atagactttc tttcgggatc gcaacagctc ccgaaatatt tataaagtta      1800
     aatcaaaaat attttggtga tatagataac gataatatta taatttactt tgacgatatt      1860
     ttaattgcca ctacagatga aacaacacat gatgaagtat taaaaaaact agtagatagg      1920
     gctaaattac taaatattaa atttaacaag gataaattac aattcaaaaa aacagaaata      1980
     aaatatgtgg gccacatttt caatgaacaa gatgtctctc ctgacccaga caaaataaaa      2040
     gccatagtga gtctgaagga acctacatcg agagtagaat tacaaagatt aataggcatg      2100
     ttcaactacc ttagagaatt cataccaaat atgtccaaaa ttatcagtcc actcagagag      2160
     ttacttaaga aagatataat atgggtatgg gaaagcagac attccttagc tctaaaagaa      2220
     ttaaagaatc ttgtaacaac agctccaata ctaacacact ttagaccaga taaagaaata      2280
     accattcaat gtgatgcgtc aaaggacggt ctgggttgct gtcttctcca ggacaaaaaa      2340
     cccatagctt ttgcttcacg cagcatgtca gaaacagaaa tagcgtatgc acaaatcgaa      2400
     aaggaatttc taagtttaat attcgcatgt aggaaatttc attactatat tttcggtcgc      2460
     acaataaatg cactaactga tcataagcct ttagtgtcaa tcatgcaaaa ggatataata      2520
     aaaataccat caaatcgtct acagaaaatg agactaaaac ttttagagta tgatattagg      2580
     ttaaaatatt tgccaggaaa aaaaatgcat atagctgatt tattatcgag agattacatg      2640
     cgagagaact ctacagagga atttgatact agtggtactg tgcattgtat aaatagattt      2700
     aacaacaata atgtttgcaa tattaaatca gaatctgagt tggatccagt tcttaataaa      2760
     ataatcgaat actatttcca aggttggcca aataggaaac aaattgataa agcagtgcaa      2820
     ctatattata acttaaaaaa acgaaataac tattgaaaat ggaattatat atgttgcaga      2880
     taaaatagtg atccctacca agttaaggcc ccttatactt aaactcctac atgaaagtca      2940
     tttaggcatt aataaaacaa aagtaaaagc taaacaaatt atatattggc cagggatgtc      3000
     taatgaaatt gaacaattta taaataattg catgacttgc aataaatttc aaaattctaa      3060
     aaaaaaaagc cctctaatac ctcatgaagt ttcgaattac ccgtatgaaa aggtaggagc      3120
     agatattcta tcttttgagg gtatggatta tttggtcata gttgactttt tctcgaaatg      3180
     gtttgattta attaaattaa aatttaagac tgctaatgaa ataataaaaa aaagtaaaca      3240
     aatatttagt acacatggta taccaaaaac cttcatagca gacaacatgc cgtttaattc      3300
     aagtgaattt atagcttttt ctaaaacttg gaattttaca attgttactt ctagccccca      3360
     ccatcctcaa agtaatggcc tagctgaaag gacagttcaa actagtaaaa aattacttaa      3420
     aaaagcccga gaagaaggat gtgatataga atcaatgctt ctagaatata ggtgcacccc      3480
     aataatcagt ctgcaagcat cgccagcaca actattattc agtaggattt taagaactaa      3540
     attaccaata gctaacaaat tattagaacc caagctccaa aataatatac aaactaaaat      3600
     aaaagtatac cagcaaaaat ataaatccaa ttatgacaaa acaactaata aaaatgaaac      3660
     acaattcaaa cctaatacaa atatattaat tcaaaataat aaagtctggt taccagggaa      3720
     agtcatagct aaagcaaata cacccagatc atattttgta aaaaacaata aaggcacaat      3780
     tataagaaga aacagtaaac acttaaaaaa tattaaaaat aataatgtta cagaaggcag      3840
     cgatgaggaa aacatagggg tcggaacaaa agcagaaaat aagcctaaca aaagtgtgct      3900
     ggggaaaaag gtactaacta gactcataag ggtaaaaaaa ctacctaaca gacttaaaga      3960
     ctgtgtattg taatgtaaat tagcataaag ccactgtaat cgatacatat tttgtactta      4020
     tattaattat tataatgttg tattactatc ttcattatca aattgtatta ttattattaa      4080
     ttttgtattg ttattaattt tgtattatga tactctataa ggtttaatat tgtattcaat      4140
     tatattttat gaaagagaga ga                                               4162
//
ID   Gypsy8-I_Dpse repbase;    DNA;    INV; 7193 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8_Dpse;
KW   Gypsy8-LTR_Dpse; Gypsy8-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-7193
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1068-1068 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   38071   30879.
XX
CC   Positions [2105-2662] - Reverse transcriptase
CC   Positions [3704-4204] - Integrase core
CC   LTRs are 98% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..1409
FT                 /product="Gypsy8-I_Dpse_4p"
FT                 /translation="MGKGQWIHRLRKEELVQCGHAFGVRLEGTVDEMRRTF
FT                 KEWMREHEDEAEWADLIEVWECRANRSSPTPRADDKQAAYEHLAPPPGAAA
FT                 AALWRSPVDIQRELIASLSVPIPERSHTGTPSRPRHPGRDRSREAERERVE
FT                 PATTRPAHLDYARVAKQVREWSFRFDGTTKPLEFLEQVEWSAETYGLDPDL
FT                 IPRAMPELLKGRALMWFVANNRQWRTWKEFSSSFQAYFLPRGYFEKLLQEV
FT                 RMRKQKWGEPFKEYMVEMQTLMRPLKCPQEEQTELIRENSMPDLRAYMRPH
FT                 RCKDLDTMMELADEFEALERDRLEFQRENPTVKARAANPFHKPADTTACRR
FT                 CKDGPLEEAAREERGAHGRLPTPTNGNIEDGYVKNPAQACRRCGSADHWSR
FT                 ECNGRPLTYCWRCGKVGISAWQCCRKTGNAPRPTPRRAVPGSQETVPQA"
FT   CDS           1109..4204
FT                 /product="Gypsy8-I_Dpse_2p"
FT                 /translation="MQRRPAGGGSTGGKGSAWPLADTDQRQYRGRICQESG
FT                 PGVPKVWERGSLEPGVQRSTAHLLLEMRKSRHLGVAVLQEDGKRPATHAAE
FT                 GRARVARNGPSSLVGRLICEEEQLSAVVEVAGVELQATVDTGATSSFVSRE
FT                 LADRLKGEGREVAAKKRVRLADGHSQEITHQIETKVGFGNKEIPMVLLVLP
FT                 GVIDELVLGWDYLRAVGAVVTCAGHRVVIPAQDRERGGQEERLSVAKAEAG
FT                 ETGPEYANKTDTTLRTAAREVAESTNGNEGAREEPVEDFLARELEAFAKIE
FT                 GVSNVAVHTITMSDPQPIKQRYYPKNPKMQAEINQKVDELVEKGCIEPSKS
FT                 PYSSPIVMVKKKNGKWRLCVDFRQVNARSVKDAYPMPRIDYILDQLREAKF
FT                 ISSLDLKDGYWQIPLAESSRPITAFTVPGKGLYQWKVMPFGLHSASATFQR
FT                 ALDQVIGPEMMPHAFAYQDDIVVIGRTEEEHRRNLKEVFRRLRLANLRLNA
FT                 DKCEFFRKELRYLGHKVTGEGICTDPEKVAAIAELKPPTNVKELRQYLGVA
FT                 SWYRRFVPDFATLVQPLTGLLKKKTEWVWTRERQEAFEEVKRRLVADPVLA
FT                 CPDFSKKFILQTDASDYGLGAILTQETERGERVISYASRTLNGPERNYSAT
FT                 EKECLAIVWAIRRLRPYLEGYRFKVVTDHMALKWLNSIESPSGRVARWALE
FT                 LQQYDFEIAYRKGQLNVVADALSRQPVEERGRRIRNVEGTPPVGEPPCKWL
FT                 EGMAEKIRKEAPKYPDYVEKGGNLYRHIPHRAGSEEVASWKLCVPKYARER
FT                 VLKESHDNPEAGHAGGRRTAARVAARYYWPGMYRDVRAYVRKCELCLRFKP
FT                 SQLQAAGEMLTQVPEEPWATVCADFVGPLPRSKHGNSMLLVLVDRFSKWTE
FT                 LVPLRKATAEALIKACRERIIARFGAPKVFITDNGVQFAGRAFKRFLEQLG
FT                 VRHQFTAPYTPQENPTERTNRTIKTMIAQFTRGRSKVLGRKMAGANAGHEF
FT                 GSVGYNGIFTGVRGARKGTPAAQGSI"
FT   CDS           5669..7192
FT                 /product="Gypsy8-I_Dpse_3p"
FT                 /translation="MQRGYICGWKTERRTLEGNYQQGENTARKKKEKKMET
FT                 KRLNHEDGKKKMEDLRAFLEEQQAIVGEGGYRAEASRQRRASVLSRGDEED
FT                 WCDGSQFLQLLASPLVSPAPSGHDSVSPTVSSDEGAGEIEDDVICVDGPRA
FT                 PTAQEKASVRRPRTMRDRGEALKQKFQEATAEEKRRIRRVLEAARTIRRRR
FT                 DERLEARRQQERKATRKEEPGHESDEAPPPPPFRVVRPPMQSPARGERASN
FT                 PEAEWQRRLQQAEEEEDELWQPTPPAEDEEGSERRPPQAKEQQQPHQQYQQ
FT                 QQQPQQQQRQHQHQQPQQQQQPQQQQQQQQQQQQQENGQWQQQPQWRGPEA
FT                 AVIGPYVSQEVRTAVRQGMVWHHQTLHITWASGPAPCETQPETGARVWEES
FT                 PLGSNDRDPRRRNHKSDPAPATAEAATAEAASAETATAEAATAEAATAEAA
FT                 TAEAATAEAATAETATAEAATAEAATAEAATTEVTEHAEVEAWERGPWVWP
FT                 APERSGAVERPT"
XX
SQ   Sequence 7193 BP; 1924 A; 1773 C; 2515 G; 981 T; 0 other;
     ggttcgttac aactggcgcc caacgtgggg cctacaacga caaataatag gacaaaggga        60
     gggagagtat agacgagaga atggggaagg gacaatggat ccatcggttg agaaaggagg       120
     agcttgtcca atgcggccac gccttcggcg tgcggttgga gggtaccgtg gacgaaatga       180
     gaagaacctt taaggaatgg atgagggaac acgaggatga ggcagagtgg gccgatctga       240
     tagaggtgtg ggagtgtcgg gcgaacaggt cctcgccgac accccgggcg gacgataaac       300
     aagccgcgta cgagcacctg gcgcccccac ccggcgcagc cgcggctgcg ctgtggaggt       360
     cccccgtcga tatacaaaga gagttgatag cgagtctctc agtgcccata ccggaacgct       420
     cacacacagg aacgcccagc aggccccgtc acccaggaag ggatcgaagc cgagaagccg       480
     agagggagag ggtcgaacca gccaccacac ggccagcaca cctggactac gctagagtgg       540
     cgaaacaggt gagagagtgg tcgttccggt tcgacggtac gacgaagcct ctcgagttct       600
     tggagcaggt cgagtggtcc gcagagacat acggtctgga tccggatctg atccccaggg       660
     cgatgccgga gctgctaaaa gggcgggcgt tgatgtggtt cgtggcgaac aatcggcagt       720
     ggagaacgtg gaaagagttc tcttccagct tccaggctta ctttctgcct cggggatact       780
     ttgagaagtt gctgcaggaa gtgaggatgc ggaagcagaa gtggggcgaa ccgttcaaag       840
     aatacatggt agagatgcag acacttatgc gacccctgaa atgtccccaa gaggagcaaa       900
     cggagttgat tcgggagaat agcatgcccg acttgagagc gtatatgaga ccacaccggt       960
     gcaaggatct cgacaccatg atggaactgg cagacgagtt cgaggcgctg gaaagggacc      1020
     gcctagagtt ccaacgggag aatccaaccg tgaaagcccg ggcagcgaat cccttccaca      1080
     agccggccga cacgacggcg tgtcgacgat gcaaagacgg cccgctggag gaggcagcac      1140
     gggaggaaag gggagcgcat ggccgcttgc cgacaccgac caacggcaat atcgaggacg      1200
     gatatgtcaa gaatccggcc caggcgtgcc gaaggtgtgg gagcgcggat cattggagcc      1260
     gggagtgcaa cggtcgaccg ctcacctact gctggagatg cggaaaagta ggcatctcgg      1320
     cgtggcagtg ctgcaggaag acgggaaacg ccccgcgacc cacgccgcgg agggccgtgc      1380
     cagggtcgca agaaacggtc cctcaagcct agtcggcagg ctgatctgcg aggaggagca      1440
     gttatccgca gtagtggagg tcgcgggcgt ggagctgcaa gccacggtgg atacaggagc      1500
     caccagcagt ttcgtgagcc gcgagctggc ggaccgactg aagggtgaag gccgggaggt      1560
     ggcggcaaag aaaagggtga ggttggcaga tggccatagc caggagatca cacaccagat      1620
     cgaaacgaag gtaggctttg ggaacaagga gatcccaatg gtgctactcg tattgccggg      1680
     tgtgatcgac gagttagtgt tgggatggga ttacctccgc gcggtcgggg cagtggtgac      1740
     ctgtgcagga cacagggtgg tgatccctgc ccaagatcgg gaacgaggag gccaggagga      1800
     aagactgtca gtggcgaagg ccgaagctgg agagacagga ccggaatacg ccaacaagac      1860
     ggacacgacc ctaagaacgg ccgcccgaga ggtggcggaa agcacaaacg ggaatgaggg      1920
     ggcgagggaa gagccagtgg aggacttctt ggcccgagag ttggaggcgt ttgccaagat      1980
     cgagggggtg tctaatgtgg cggtgcatac aatcaccatg agtgacccgc aaccgattaa      2040
     acaaaggtat tacccaaaga accccaaaat gcaggccgag attaaccaga aagtggacga      2100
     actggtagaa aagggatgca tagagccgtc aaagagcccc tacagttcgc ctatagtgat      2160
     ggtgaagaag aagaatggca agtggagatt gtgcgtggac tttcgtcaag tgaacgcgag      2220
     atcagtaaag gacgcatacc caatgcccag gatcgattac atactcgatc agctgcggga      2280
     agcaaagttc ataagtagcc tggatctgaa ggatggatat tggcagatcc ccctggccga      2340
     gagcagccgg ccgatcacgg cgttcacggt gcccggcaag gggctatacc aatggaaggt      2400
     gatgccgttt gggttacact ccgcgtcggc caccttccaa cgggcattag accaagtgat      2460
     agggcccgag atgatgccgc acgcattcgc gtaccaggat gacatagtgg tcatcgggcg      2520
     aacagaagaa gaacaccgaa gaaacctgaa agaggtattt cgacggctcc gattggccaa      2580
     cctgcggctg aatgcggaca agtgcgaatt cttcaggaaa gagctgcggt atctgggcca      2640
     caaggtaacc ggcgaaggga tatgtacgga ccccgagaaa gtcgcagcca tcgccgaact      2700
     gaaaccgccg accaatgtca aggagctaag gcagtacttg ggagtggcct cgtggtaccg      2760
     gaggttcgtg cccgacttcg ccaccctagt gcagcctctc accgggctcc tcaagaagaa      2820
     gacagaatgg gtctggaccc gggaacggca ggaagcgttc gaggaggtga agagaagact      2880
     agtggcggac cccgtgctgg cgtgccccga cttctcgaag aaattcatcc tgcagacaga      2940
     cgccagtgat tatgggctgg gcgcgattct cactcaggag acggaaaggg gagagcgggt      3000
     aatatcgtat gctagcagga cgctaaacgg acccgaaagg aactattcgg cgacggagaa      3060
     agaatgtctg gccattgtgt gggccatacg ccggttgagg ccatacttgg aagggtatcg      3120
     cttcaaggtg gtcacggacc acatggctct gaaatggtta aatagcatag agagtccgtc      3180
     gggaagagtg gcgagatggg cattagagtt gcagcagtac gactttgaaa tcgcatacag      3240
     gaaaggacag ctcaacgtgg tagccgacgc actctcccga cagccggtgg aggagcgagg      3300
     ccgtcgaata agaaatgtgg agggaacacc gccagtgggc gagccgccct gcaagtggtt      3360
     agaaggcatg gcagagaaga tcaggaaaga agccccaaag taccccgact atgtggagaa      3420
     gggggggaac ctgtaccggc acattccgca ccgggccggg agcgaggaag tcgcctcgtg      3480
     gaagttatgt gtgccgaaat atgcccgaga aagggtttta aaggagagcc acgataaccc      3540
     ggaggcaggc cacgccggcg gaaggagaac cgcggcacgg gtggcggcaa ggtattactg      3600
     gccggggatg tacagagacg tgagggccta cgtgcggaag tgcgaactgt gtttgcgttt      3660
     taagccaagt cagctacaag cggcagggga gatgttgaca caggtaccgg aagagccatg      3720
     ggcaacggta tgcgcggact tcgtgggtcc tctgccgaga tcgaagcatg ggaactcgat      3780
     gctgctggtg ctagtggatc gattctcaaa atggaccgag ttggtgccgc tgaggaaggc      3840
     cacagccgag gcactaataa aggcctgtcg agaacgcata atagcccggt ttggggcacc      3900
     caaagtcttc attacagaca atggggtgca gtttgcgggc agggcattta aacgatttct      3960
     ggagcagcta ggagtccgcc accagttcac ggcgccatac acgccgcaag aaaacccgac      4020
     agagcgaaca aacagaacaa taaagaccat gatcgctcag ttcacccgag ggcgatcaaa      4080
     ggtgttggga cgaaaaatgg ccggagctaa tgctggccat gaattcggga gtgtcggata      4140
     caacgggata ttcaccggcg ttcgtggtgc aaggaaggga accccggctg cccaaggctc      4200
     tatatgatga ggagacggta ggcacggggc agggcgcaga gacgccggaa gaaaatgcga      4260
     agaagttaaa agagctgttt cagttggtac gacgaaactt ggaaagggca gcccaggatc      4320
     aggccaggca ctacaacctg agaagaagac cgtggagacc caaagtggga gaaaccgtat      4380
     gggccaaaca gcatcacctg tccaatgcag cggagggatt cgccgcgaag ctggcaccaa      4440
     ggtacgatgg gccgtaccag atagaggact tcatatcccc cgttatctgc agcctaagaa      4500
     aggagggcga caggaaaaag agaacggccc acatacgcga cctgaaaccc cagcccgacg      4560
     attgagggac gcaggggtga gagggaatgg atggaatggg tcgccctaaa agggtcgcgc      4620
     aggaccggga acggtagggt gccacgcagg acacggggga agggtgccgc gcaggacacg      4680
     cacgagactc gtcagcacgc agggtgacgg actggcgcac ttagatttaa taaaaaaaaa      4740
     agggagagca ggaaagctgt ggttggaacg atctgaaaaa gaaaaggggt gagaattagt      4800
     aggagtaaag aaaattaatg cgagaagggg gaaaagctca gcaaacctga acaggaaacg      4860
     cgtccccgaa agctgggagg cgaatccggg gccggggagg gtaatctcag gcagcggatg      4920
     accaaagaaa gcccaggggc caggctcacg cctcaacgcg gtctcacagg gcaactacaa      4980
     gtgtcgggcc ggaacgacgg gtgccgctca tgcgtggtct accgggcgag gagtcggatg      5040
     atcctcgggt ccgagccact gtgtgaggga gatgccggtc aaaagagtcc ggccgggggc      5100
     gcgtagtagt tgccctggga tgtgagccaa agattctagc ccgggcggag ggtcgaagga      5160
     cccgttgttc acgagcggaa tcgcggcaag cgacccgcag tgagggcaga gggcgagctg      5220
     gaaaggaaga aagggttaag taaaaggcat ccgggtcggg agaactcacc caggccaagg      5280
     agggtccaat cagcacggga ggaagaacag ggcgacggta gcagggaagt agatggtaat      5340
     taaaataaaa ggagaatata tatatacaga aaacaaatgt acgtacgcac aaatgggaag      5400
     ggggtggtcc atcaaagatg agaaaagaat attatccgtc agccaacaca gaacgcggcg      5460
     agaacacaac agtatccaaa aaaaaagaca aggcgaagcc ggataaagag cggagagcgc      5520
     gttggtactc acccaaccag gggaaagatg ccgttagaga gcgaggccgg tagagagcca      5580
     agccatgagc acatacgtaa caaccgttag aaccaggcaa gagagaccga acccgacgca      5640
     ccggcaccgt tagagggaac gactggtaat gcaacgcggg tatatatgcg ggtggaagac      5700
     ggaacggcgg acacttgaag gtaattatca acaaggagaa aacacagcaa gaaaaaaaaa      5760
     agaaaaaaaa atggagacga aacggctcaa ccacgaggac ggaaagaaga agatggaaga      5820
     cctcagggcg ttcttggagg agcagcaggc gatagtgggg gaggggggct accgcgccga      5880
     ggcttctcgt cagcgacggg cgtccgtgct ctcgcgtggc gacgaggagg attggtgcga      5940
     tggctcccag ttcctccaac tgttggcctc gccattggta tctccggcgc cgtcgggcca      6000
     cgactccgtg tcaccgacgg tatcctcaga cgagggggcc ggggagatcg aggacgacgt      6060
     gatttgcgtc gacggtccac gcgccccaac cgcccaagag aaggccagcg tgagaaggcc      6120
     gcggaccatg cgcgaccggg gcgaggcgtt gaaacagaag ttccaggagg cgacggcgga      6180
     ggagaagcgc cgaatccgcc gggtgctgga ggcggcgcga acgatccgac ggcggaggga      6240
     cgagcggctg gaggcgcggc ggcaacagga gagaaaggcc accaggaagg aggagcccgg      6300
     ccacgagagc gacgaggcgc cgccaccccc gccattccga gtggtgcggc cgccgatgca      6360
     gtccccggcc aggggcgagc gggcctcgaa tcccgaggcc gaatggcagc ggcgactgca      6420
     acaggccgag gaggaggaag acgaattgtg gcagcctacg ccaccagccg aggacgaaga      6480
     gggctccgag aggcggccac cgcaagccaa ggagcagcag cagccgcatc agcagtacca      6540
     gcagcagcag cagccgcagc agcagcagcg gcagcaccaa catcagcagc cgcagcagca      6600
     gcagcagccg cagcagcagc agcagcagca gcagcagcag cagcagcaag agaacgggca      6660
     gtggcagcag cagccacaat ggaggggacc ggaggcggcc gtaatagggc catacgtgtc      6720
     ccaggaggtg aggaccgccg tgcgccaggg gatggtatgg caccatcaga ccctgcacat      6780
     cacgtgggcc tcggggcccg ccccgtgcga gactcagcca gagaccggcg cccgagtgtg      6840
     ggaggagagc cccctcggca gcaacgacag ggacccgcgg aggagaaacc acaaatcgga      6900
     tcccgcgccg gcgacggcag aggcggcgac ggcggaggcg gcgtcggcgg agacggcgac      6960
     ggcagaggcg gcgacggcag aggcggcgac ggcagaggcg gcgacggcgg aggcggcgac      7020
     ggcggaggcg gcgacggcgg agacggcgac ggcagaggcg gcgacggcag aggcggcgac      7080
     ggcggaggcg gcgacgacgg aggtgacgga acacgcggag gtcgaggcgt gggaacgcgg      7140
     tccgtgggtg tggcccgcgc cggagaggtc gggggcggtc gagcgcccaa cac             7193
//
ID   Gypsy8-I_Dya repbase;    DNA;    INV; 10311 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8_Dya;
KW   Gypsy8-LTR_Dya; Gypsy8-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-10311
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1069-1069 (2009).
XX
DR   Genome; chrU; Positions  830636  820326.
XX
CC   Positions [7665-8054] - Integrase core
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3409..4905
FT                 /product="Gypsy8-I_Dya_1p"
FT                 /translation="MTPGSTLPYITLNLFDPPQAVKFLIDTGSSYSFIDPA
FT                 ISPQESTRTLDREIKITTVMDSYTLTMATTLPMPKELGKQGEINLLLFKFH
FT                 TYFNGLLGIDVLTKLKAKIDIKNLKLETQSASIDIITQINRGTQELHIAPH
FT                 SKSRIKLPVDIDDGDFSCNEVGINKDLTITGGLYTAIDGHSYLEVANNSHD
FT                 EQTLCLDQPIEVAPYDEDEHDQIYSMTLGPDPTEQFKRPIDQIRTEHLNPE
FT                 ELQGLFAVCNQFRELFYDERETLTFSNTVKHSIPTTDDTPVHVKTYRYPYI
FT                 HKEEVRNQIKKMLEQDIIRNSHSPWCAPVWVVPKKTDSDGNKKWRLVIDFR
FT                 KLNEKTIADPYPIPNINEILDSLGRAKYFTTLDLASGFHQIQMNPEDRAKT
FT                 AFSVENGHYEFTRMPFGLRNAPATFQRVMDNVLGTLIGDICLVYLDDIIIF
FT                 SASLQKHLDDINSVFRKLRTANFIIQLTKSNFSCGENRFLGPRSPLKKESN
FT                 PNR"
FT   CDS           5679..8054
FT                 /product="Gypsy8-I_Dya_2p"
FT                 /translation="MTLGPDPTEQFKRPIDQIRTEHLNPEERQGLFAVCNQ
FT                 FRELFYDERETLTFSNTVNHSIPTTDDTPVHVKTYRYPYIHKEEVRNQIKK
FT                 MLEQDIIRNSHSPWGAPVWVVPKKTDSDGNKKWRLVIDFRKLNEKTIADRY
FT                 PIPNIKEILDSVGRAKYFTTLDLASGFHQIQMNPEDRAKTVFSVENGHYEF
FT                 TRMPFGLRNAPATFQRVMDNVLGTLIGDICLVYLDDIIIFSASLQKHLDDI
FT                 NSVFRKLRTANLKFQLTKSNFLRKEIDFLGHVVTQEGIKPNPNKIEAIKGF
FT                 PCPKTTRQIKSFLGLIGYYRKFIKDFARITKPLTNQLKGGKSVIINNEFRE
FT                 AFEFCKTLLVNDPILRHPDFTLPFTLTTDASNVALGAVLSQGPKTCDRPIC
FT                 FASRTLNEAETRYSTIEKEMLGIVWAVKYFRPYLYGRKFKLVTDHKPLLGL
FT                 RNFNGQNAKLIRWRDALSEYTYELEHEKGSQNVVADALSRVEPNTHINIAM
FT                 PNEPGDIPVSQSPLNAFNSQVTLTVSPDSACTICVRSKNKIRRQISEPLFT
FT                 LETVTDILKETLEPNKTLAVFATDEIFEIIKNSYSEYFTGTNNYKILRCLT
FT                 FLKEPSSTDELVSLIKTTHVNKNHRGVDEMYAHLKREIYVPHLKSLITQAI
FT                 WDCETCLTLKYDRHPQKPPYILPEIPNEPLDILHTDIYTINKNYNLTIIDK
FT                 FSRFAQAFPLPNRNSISVTKAFKTFFCQFGIPKKVIFDQGAEFAGTVFTDF
FT                 LEQYGVEVHVTSFQQSSSNSTVERLHSTLTEIYRIILAKRK"
XX
SQ   Sequence 10311 BP; 3691 A; 2541 C; 1845 G; 2224 T; 10 other;
     cgacgtaact ggcgcagccg gaaaaggaac ctaaaggaga tccagaacat ccagaaggag        60
     gatatgaaga tcaccgggat attcttaaat attatacttt aatgcaggta agcagccggc       120
     caagtgactt caataagtga gtgcaaatgt aaaataaaga aagaaacgaa attaaaaaga       180
     atgcagtgca tccgaacaaa ttgtaaattc cgtgcgctta aaagaaaaac aaccgactcc       240
     aaacataaat aaataccatt atacacaaga acaaatatgc agaatcagca aattacggtg       300
     tgcggaagca aaataaacgg cattaacaat tgtgcattac acacgcaaat ctaaaggcat       360
     attaataaat attaaaacga tcatcaatcg ctgatgactg taaggcatcg agctttaaaa       420
     aaagtaaaca ctaaatatgc gacgaaacaa atatactatt aaaccctaaa attcacaatt       480
     taaatttcgt actacataca tactacgtac tacgtacata tttttagcgc ctaatatgta       540
     ccacaaaaaa ataaaataaa taatttttac acaaaaaatt tatagaaaca tatttttagc       600
     aacgatcaat cgctgattgc cgctataaaa tgcatcgcgc attaaaatat gtacacgcct       660
     aatatgtacc acaaaaaaat aaataaataa tttttacaca aaaaaaattt atagaaacat       720
     atttttagca acgatcaatc gctgattgcc gctataaaat gcatcgcgca ttaaaatatg       780
     tacacgccta atatgtacca caaaaaataa aacaaataat ttttacacaa acaattttta       840
     tggaaacata tttttagcaa caatcaatcg ctgattgccg ctacataatg catcgcgcat       900
     taaaatatgt aaacgcctaa tatgtgccgc aataaaaata ataataaata attttgcata       960
     ttacacaaaa attttctatg gaaacatatt tttagcaaca atcaatcgct gattgccgct      1020
     acataatgca tcgcgcatta aaatatgtaa acgcctaata tgtgccgcaa taaaaaataa      1080
     taataaataa ttttgcatat tacacaaatt ttttttatga aaacatattt ttagcaacaa      1140
     tcaatcgctg attgccgcta cataatgcat cgagcattaa aatatgtaac gccttatatg      1200
     tgccgcaata aaaaaaataa tttcccatat tacacaaaga aaaattatag aaacatacat      1260
     aggcggcaat caataataat taatagccgc tcatgcatcg cgcataaata tgtgaatata      1320
     gccacactga aaaaaaaggg aaacgaaacc tatgtgcccc aacttaacaa atgctagtgc      1380
     tccgccacct aaattaatgc ttgtgtgtat ataagtgcgg ccgatcattt ctttctgtgt      1440
     gccggggaag aaaggggaaa ccggcaccga cagcagttcg tagggagccc ccctccaggc      1500
     ctcggcaacc gcacttgaca gtcgaccact tgagtttgtt tatgtgggca cacatacttg      1560
     catacacgcc gcagcgtccg gccgctacat tgtagacggt gtcgcatgac aacataaact      1620
     atactcagta aaatcgacaa aacgaccgcc gcggagtcgg atgcttttgc gcatcggatg      1680
     ctaaaataaa aatatacaaa taatcaaatt ttacgactgc agtgcacaat gtatcaagaa      1740
     aacacttaga aaaaaaaaaa aagagaaaca ctgcactgaa accacttggc cgggggcttt      1800
     gggaatttaa ttctccatta ataaacatac actaacaata tcaaattaca gatcccaacg      1860
     tattcgttag gatcgacaac acatcccact atcgataagt acaagcaaaa cagatatacg      1920
     tagctaagaa aaatacccaa cataatttaa gaaaagggga agagaaaaga atacgccaca      1980
     cccctaaact atatattatc cgtactattt tttaacatat tcatacattc attatataca      2040
     cattaaacaa aaagaaaatt tttctatacc ttatatatat atattttttg cgaattcaaa      2100
     atttttatta tacccttatt acccaaaaat ttttataaac accttactag gatacaatac      2160
     caataccaat accattacat atatacgtta ttctctcaga caatccacac ctataattcc      2220
     tatatacatt ttactagaat acaacaccaa taccaatacc cttacatata tacgtcattc      2280
     tctcagacaa tccacaccta tacatctcaa actctttagt actctcgcaa atgtccagaa      2340
     aaacaatcgt ggataagaca aaatctaggc taggtcttag aagtagcagc agtttaccag      2400
     agataaggga ggaagaaatt atagttatgg attccggaaa cgggtcaggg ggatcgagga      2460
     cgactagtcc ggcaccccac gtaataaaca tggccaacgc tagcacaata ctaaacacct      2520
     caatgaatac atcgattaat atgacactaa atccacaaga catactagcc tttgtaaaac      2580
     aactgccgac ctttgagggt ataccgggga cactacaaaa attcatagtg agcgtggagg      2640
     aagtgatcat gctcattagg ggcactgatc agactccgta cgggcagcta ctgctacgca      2700
     cactatgaaa caaggtgata ggcaaggcgg acgaggccct gaatatgctg gatacaaacg      2760
     catgtacgca tgcaagaaat cggagcctat tctaatctcc gaaatacaga atcaaccgga      2820
     cggtcttccc ttcgggaaat tgtttcacga aattaacaga ttgagaagcg agctgctgac      2880
     actggccacc gattccgaac aagggggctg tgcagcatcg aggtgagctc tttacaacgg      2940
     catttgccta aatgccttcc tagtaggcat ccgcgacccg ctcaggacgg ccatccgggc      3000
     taggaacccg tcaaccatag aacaagccca cgaatggtgc caggcaaaac aaagcttcat      3060
     gtaccaaaga cagaataggc ccagaaataa ttacaataac aatttcgacc acaacagggc      3120
     acccccaaac agaccagggg gacgcttcga acgataccgc aactatcccc aaaacaacta      3180
     caggacggat aaccggaggg ataacccctt ccggcaaggg gaattccgca acaacgacaa      3240
     taggggctgg aataacaatt tcagggcagg accaccggcc ccgagacaag ataacccaga      3300
     ccgacgcaat ggaccccctc caagggctcc aacaaatttt aacaatatcg acgacaatgt      3360
     aaattttcaa ccaggagcct cgaccgacaa gtcggctacc taagtaacat gacgcctggc      3420
     tcgactcttc cctacataac actgaaccta tttgaccccc ctcaagccgt aaaattcctt      3480
     atcgacaccg gttcctcata ctccttcatc gacccggcca tcagtccgca agaatcaacc      3540
     cgcaccctcg accgagaaat caaaataacc actgtcatgg acagttatac cctgacaatg      3600
     gcaacaacct tgcccatgcc aaaggaattg ggaaagcagg gcgaaataaa ccttctactc      3660
     ttcaaattcc acacatactt caacgggctc ctgggcatag acgtcctcac aaaactcaag      3720
     gcaaagattg atatcaagaa cctaaaactt gagacacaat ccgcctcaat cgatataata      3780
     acacaaatta acaggggtac acaggaactc cacatcgcac cccacagcaa gtctcgaatt      3840
     aaattaccag tagacataga cgatggggac ttttcctgca atgaagtagg catcaataaa      3900
     gacctcacta tcacgggcgg actttacact gctatcgacg gacatagcta cctcgaggta      3960
     gcaaacaact ctcatgacga acaaacactt tgcttagacc aaccaataga agttgcaccc      4020
     tatgacgaag acgaacacga ccaaatctac agcatgacat tggggccaga ccccaccgaa      4080
     caattcaaac ggcctatcga ccaaatccga actgagcacc taaacccaga agagctacaa      4140
     ggactgttcg cggtctgcaa ccagttccgg gagctattct acgacgagag agagaccctc      4200
     accttttcga atacagtcaa acactctatc ccgacgacag acgatacacc ggtgcacgta      4260
     aagacttaca ggtacccgta catccataaa gaggaagtac ggaaccaaat aaaaaagatg      4320
     ctggaacaag acataatccg aaatagccac tcaccttggt gcgcacccgt ctgggtagta      4380
     cccaagaaaa ccgactcgga cggcaacaag aaatggcgac tggttataga tttcaggaaa      4440
     ctgaacgaga aaaccatcgc cgacccatac cctatcccca acataaatga aatcctcgac      4500
     agcctaggcc gggccaagta cttcaccacc ctggacctgg caagtgggtt ccatcaaatt      4560
     caaatgaacc cggaagatag ggctaagaca gcattttcgg tcgaaaacgg ccattatgaa      4620
     tttaccagaa tgcccttcgg gctgagaaac gcccccgcca catttcaacg tgtcatggat      4680
     aacgtcttag gcacgcttat aggagatatc tgcctagtct acctagacga tatcataata      4740
     ttctccgctt cactccagaa acatttggac gacataaact ccgtcttcag aaaactccgc      4800
     acagcaaatt ttattatcca actcaccaag tcgaacttct cttgtggaga gaatagattt      4860
     cttgggccac gtagtcccct caagaaggaa tcaaacccga accggtaata taatagnnnn      4920
     nnnnnngatt gtaacacgat tcacttaata ataataataa aataacacaa ccctaaattt      4980
     gaacaatggc aaaacagtct cttacccatt ccacgaatca tttgcaaagc cattttgcta      5040
     agcattttca aatccaaatg gccagccata aatgttcaag gaaaaaacat catttcttca      5100
     aaatgaaact agagccacat atgatatata tgggggggaa attatcgggc atttggattc      5160
     caatttaagc aattatgttc aatcaaatga gcgcatgcgg aatgcaacgt acaatgcaag      5220
     ataaacggag tgtgtcaaaa caatgatgaa tgtgcaataa ggaaacaatt gccaagaagg      5280
     cacttcactc cttaaggtaa aatgttaaaa cgtacgaata ccgaggtcac atttgcacgc      5340
     catgtccagt gcacagattt atagatttaa aattcaactt cacagaaaat cagaaacatg      5400
     ggacaaaaga taacacatta acaagggtac acaggaacat cgcaccccac agcaagtctc      5460
     gaattaaatt accagtagac atagacgatg gggacttttc ctgcaatgaa gtaggcatca      5520
     ataaagacct cactatcacg ggcggacctt acactgctat cgacggacat agctacctcg      5580
     aggtaacaaa caactcccat gacgaacaaa cactttgctt agaccaacca atagaagttg      5640
     caccctatga cgaagacgaa cacgaccaaa tctacagcat gacattgggg ccagacccca      5700
     ccgaacaatt caaacggcct atcgaccaaa tccgaactga gcacctaaac ccagaagagc      5760
     gacaaggact gttcgcggtc tgcaaccagt tccgggagct attctacgac gagagagaga      5820
     ccctcacctt ttcgaataca gtcaatcact ctatcccgac gacagacgat acaccggtgc      5880
     acgtaaagac ttacaggtac ccgtacatcc ataaagagga agtacggaac caaataaaaa      5940
     agatgctgga acaagacata atccgaaata gccactcacc ttggggcgca cccgtctggg      6000
     tagtacccaa gaaaaccgac tcggacggca acaagaaatg gcgactggtt atagatttca      6060
     ggaaactgaa cgagaaaacc atcgccgacc gataccctat ccccaacata aaagaaatcc      6120
     tcgacagcgt aggccgggcc aagtacttca ccaccctgga cctggcaagt gggttccatc      6180
     aaattcaaat gaacccggaa gatagggcta agacagtatt ttcggtcgaa aacggccatt      6240
     atgaatttac cagaatgccc ttcgggctga gaaacgcccc cgccacattt caacgtgtca      6300
     tggataacgt cttaggcacg cttataggag atatctgcct agtctaccta gacgatatca      6360
     taatattctc cgcttcactc cagaaacatt tggacgacat aaactccgtc ttcaggaaac      6420
     tccgcacagc aaatttgaaa ttccaactca ccaagtcgaa cttcctacgt aaggaaatag      6480
     atttcttggg ccacgtagtc actcaagaag gaatcaaacc gaaccctaat aaaatagagg      6540
     ccataaaagg atttccatgc cccaagacca ctcgacaaat taagtctttc ctgggactca      6600
     taggctatta caggaaattc atcaaagatt tcgcgcgaat taccaaaccg ctcaccaacc      6660
     aattaaaagg tggcaagtcg gtaataatca acaacgaatt ccgcgaagcc ttcgaattct      6720
     gcaagacact acttgtcaac gacccaattt tgagacaccc agacttcact ttacccttca      6780
     ccttaactac agacgcgagt aacgtcgcgt tgggagcggt gctgtcgcag ggaccaaaaa      6840
     cctgtgacag accgatatgc ttcgcaagca ggaccctcaa cgaggctgaa actcgctact      6900
     cgacgataga gaaggaaatg ttaggaattg tgtgggcagt aaagtatttc agaccatacc      6960
     tctacggtcg gaaattcaaa ctagttaccg accacaaacc cctattagga cttaggaatt      7020
     tcaatggaca gaacgcaaaa cttattcgct ggcgggatgc cttgagcgaa tacacgtacg      7080
     aattggaaca cgaaaagggt tcccaaaacg tcgtcgcaga cgcactgagc agggtggaac      7140
     caaatactca cataaacata gctatgccga acgaaccagg agacattccg gtatcccaga      7200
     gcccactcaa cgcttttaat tcacaagtca cccttacagt ttcaccagac tcggcatgta      7260
     cgatctgtgt ccgatccaaa aataaaatca gaagacagat ttctgaacct ctctttacct      7320
     tagagacagt cacagatatc ttgaaagaaa cgttagaacc aaacaagacc ttagccgtgt      7380
     tcgctactga cgaaattttc gaaataatta aaaattctta ttccgaatat ttcacaggaa      7440
     ctaacaacta taaaatcctc aggtgcttaa cgttccttaa ggaaccttca agcaccgacg      7500
     agttagtatc acttattaaa acaactcacg taaacaaaaa ccaccgaggg gtagacgaga      7560
     tgtacgccca cctaaaaagg gaaatctacg taccccactt aaaaagcctc atcacacagg      7620
     caatttggga ttgcgagacc tgcctcacac tcaaatatga caggcacccg caaaaaccac      7680
     cctacatatt gcccgaaatc ccgaacgaac cattagacat cctgcataca gatatctata      7740
     caatcaataa aaactacaac ctcacaatca tagacaaatt ctctagattc gcgcaagcat      7800
     tccctctacc caatagaaat tccatcagtg taaccaaagc atttaaaaca ttcttctgcc      7860
     aattcggtat acccaaaaag gtcatattcg accaaggggc cgaattcgcg ggaaccgttt      7920
     tcacggattt cctagaacaa tacggcgtag aggtgcacgt gacatccttt caacagtcaa      7980
     gcagtaactc gacagtcgaa aggctccatt caacactgac ggagatatac cgaatcatcc      8040
     tcgcaaaaag aaagtagggg aaactggact tggaccatga agacatctta tcagagacag      8100
     ttgtcacata caataatgcg atccactcga gcacgaacct aacaccgttc gaactcttca      8160
     gcggccgtac ccacgttttc acaaaaacag tcaagttcaa caccggacac gacttcctaa      8220
     ataaactcaa tgaatttcaa accaaaatct acccggaagt caaaaaacac ttggaagaca      8280
     tcgctttaaa gcgcacgtct aaactcaacg aaacgaggga ggacccccct gccttaccta      8340
     ccggaaacac agtcttccgg aaggagaaca ggaggaataa aataacaccc cgtttcacga      8400
     gacaaacagt accacgggac agcggacgca cactccacac gacacggaac caacaaatac      8460
     acaaacaaaa gattaggaag atttccttac ccaaatgacc accgacatgg gcttaacaca      8520
     tagatagact tggattttgg ggctccgtgt tattttctta ccaccaatgg gttttatatt      8580
     cttccactaa aatatttttt tggccaactt ctattaccaa ccttttgacc agggatttcg      8640
     tcgcgttgat acctttatca gaaccttaca ttaggagtta ctagcctagg cttgttggcg      8700
     gcgcatacta caccaccgat gactaactag aaacacttaa ctgacgttca ttacagattg      8760
     acgatgacca acgccaagga actgacattc aaaccattga ccaacgacca agcaataata      8820
     aaagtccaac taggaaaggc cagaacggta tcagcattca caacaataca gcatacaata      8880
     cacctgaacg agtacgagat cgcagccaaa gggttgtaca agctcatagg ggatctcccg      8940
     aacaaatcgg aggccactaa ccttaaatcc ctactactcg cgaaacttga ccttatcaac      9000
     cataggctag cctctctgct acccaacacc aatagcggta gaattagaag aggcttgatc      9060
     aacggtctag ggacaatagt gaagatagta agcggtaaca tggacgccaa cgacgaagac      9120
     agaataaaca aacaactagc aaacctaaat aacaatgagg agagaatgaa tagattcaag      9180
     aatgaaacaa tatttagatt cagggaaata gcaacacaca ttaataggga acaggagata      9240
     atgactgata tcattaactc aaatcaaaat aaaattttta aagagctaaa cacaggacaa      9300
     agggacctag agctagaccg tcttatccac aggttaaata tcaacttaga cctcctctac      9360
     gctcatttga ctagcgtagc ggaaagcctt ttattctcta aattaaaaat aatccccaaa      9420
     tacatcctaa ccaatcccga aataattaaa atcaggaact ctctaacgac acagggaata      9480
     caaatcaacg cagaccacga gatctatgaa ttattatcgc ttcgtactag caccagtaaa      9540
     aaaaaccgta acattcgaaa tcaagatccc aattttgtct actacaaatt ataaattgta      9600
     ccaaattata gcaataccgt tcaacggcac gcagatagta aacctaccca actacatact      9660
     aagaaataac gaagaattaa atattgtaca agacccatgt atcaaagtaa actccgaatt      9720
     tgtatgcgaa acccccacca tccccggtag ccagtcctgc ctccacaacc tacttaacaa      9780
     caaaccagcg acatgcgaca cggtggaaac cgcagggaac cagcaaatct acagcccaat      9840
     ggaaggaata ctcatcatca ccaacgcagt aaacctcaac atatcaacaa actgcgcacc      9900
     ggaaagaata gtaaacggct cgtttatcgt aagatacgat aactgctcta tcttggcaaa      9960
     tggaacgaga tatgccgaca ccatcaccac gatcacggaa aaactacaga ttaacttgat     10020
     caaagccgag gaggtaaaaa ccatacccgc aggagaacca ctcagcctgc ggaaactaca     10080
     actaaataca ctaaaaaccg aagaagacat cgcagcaatt tacgacaacg caacgaccca     10140
     ccttacagtc atctgcatcc tacttgccgg ctccacggca ttggccgccg ccgcctgggc     10200
     gctaaggaag aataaaacga cgtacaccgc cacgcatgtc cttcctaccg gaactccggc     10260
     cataccttcg ctatggccct cgttccgtct tgagggggga ggagttatcg g              10311
//
ID   GYPSY8-LTR_AG repbase;    DNA;    INV; 720 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from GYPSY8_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSY8-I_AG;
KW   GYPSY8-LTR_AG; Long terminal repeat; RETRO23_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-720
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO23_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 7-7 (2002).
XX
RN   [2]
RP   1-720
RA   Kapitonov V.V.;
RT   "GYPSY8-LTR_AG: LTR retrotransposon from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (30-MAY-2003).
XX
CC   4 bp target site duplication. Name changed from RETRO23_AG_LTR
CC   to GYPSY8-LTR_AG [2].
XX
SQ   Sequence 720 BP; 172 A; 112 C; 179 G; 257 T; 0 other;
     tgtaatgtga tgatcgtaca actgtacttc gagtaccgtc gcggtaggtc agtgttttac        60
     tgacatgagc cgaggtggaa taaaacttcg ttcgaagcgg acttttcgac acttgatcgt       120
     ccaggcgatc atagaaacct ttaggaggtt tcccttactg gaaacgttgg agtttagagg       180
     ccttaccttg ggtaggggga cataactaaa ctctttaaat gagaagtcga tagatgtagg       240
     atgggcatag tcctatcctg acagtccgaa cgaatctgac ttgccatgat cggagttggt       300
     tttatttata ctcaaaagaa gttaagggtt tctcacattt ggttccgggt tgtatgttgg       360
     aaagttattg ttttcactca gctagttacg tttgtctttt gttgacaaga acgatggttc       420
     ttgtcactaa gttcctgttt tgggtttaat gcatatactg ttcctgcttt gggttataat       480
     gcataaactg ttcctgctta tgttgtacgt ttcggttggt tctgataagt gtgtcacaat       540
     tgtttttata tgaacggtgt ggcctgagct cttccgggtg tgtatggtat gatctgattt       600
     actgaatgtg ttataatgaa tgtgttacaa tggtgtggtt tggctttcca aagtgtgtta       660
     caatgtgtct atagctgata gtgtgtatta taataagttc tgtatagcag atatgctaca       720
//
ID   Gypsy8-LTR_AP repbase;    DNA;    INV; 130 BP.
XX
AC   Contig23376;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8AP;
KW   Gypsy8-I_AP; Gypsy8-LTR_AP.
XX
NM   Gypsy8-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-130
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 452-452 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 130 BP; 40 A; 17 C; 13 G; 60 T; 0 other;
     tgttgtagtt gtcaacactg tcgttattat tattattatt attattttat cattatgtac        60
     agcaaactgc tttttcatgg ttatgtatct ttcattatac tcttaatatt tcaagttaaa       120
     ataaaacaca                                                              130
//
ID   Gypsy8-LTR_Dpse repbase;    DNA;    INV; 1488 BP.
XX
AC   Unknown_singleton_95;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8_Dpse;
KW   Gypsy8-I_Dpse; Gypsy8-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1488
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1070-1070 (2009).
XX
DR   Genome; Unknown_singleton_95; Positions   30878   29391.
XX
SQ   Sequence 1488 BP; 441 A; 381 C; 486 G; 180 T; 0 other;
     tgaagaggca ggcctcctgc ccggagcccc aggcaagacc caagcggccg gccctgcagc        60
     ggcagagctc agcaccggca gccacgggcc actggaaggc gatcccgcgg gaggagtggc       120
     cggcggcagt gagccgcgca caggcccaga tacgcctcgt gggtagacgt gtgaaaaaat       180
     tggtaagcga gcgaggtacg cgttaccgca tcgccatgtc ggccacgcgc acggaggtat       240
     tccgagagca aaaataaagg aagacggaga agagaagaaa aagggggggg ggcagcagaa       300
     acacaaaaaa aaagaagggc agaacacgcg ggagaatatg aataaagaaa aaacaaagaa       360
     aagaagaaaa cggaatatcg actagggggg gaagtatcga gtggatcgca gaagcgcccc       420
     tacaccttat cgataggcgg gagtcggcgc cagccagaaa agtgcaaggg ctgacagcgc       480
     ccccgagcca aggcgccaga gggcgccaga acgccggcga tcccaggtac aacgaaatgc       540
     gcgcgcaact tcgggccgtt tgaatgagga aagcccaccc catcccgaga tcgcggaaaa       600
     cggaagtatt ccgctacggg aagaaagagg ggggtgtgag gaaccatggt tcccacaggc       660
     cgagtgcgac caaaagcaca gtcggataaa agctgacggc cggccggata aggcgaaggt       720
     caggccagat gcccccggtt atccggacgc ggcgaagagg ccaagggcct cgagagggga       780
     agtgccctgc tctcggagag agagacacaa gagaggcaaa ggaaacggcg ggatcgggcc       840
     agcagtaatt tggcgcatga ccaaataagg gcacgggatc acgccgccgg ccaggccccg       900
     ttacgaaggc cgtggaaacc aggagacggc gatggaaaac taccgacgcc gagccggggc       960
     ctggcaaggg gctataaaag gaggcggcgg cgtcaaagcg ggtctctttt cccgcggata      1020
     agtaagcgcg cgcgcacgtt gagacccggt cgaaacgcaa gagtgatact cggtacgaaa      1080
     caaagaagtg tagtgaagtg tagcagcagg cagacaggcc ccgcctgccc ccccagagta      1140
     agtctaagtt aagtgaagat ccccgtacgc cggcggaagc taggagggga gtgcgagacg      1200
     tggagtgcgg attcgagtgg cggaccaaag caatagcgga ggtcaacttg ccccaatcaa      1260
     tagcctcgac gctgccacac ccgacgagag cccccgcgtg gtggagatcg gtatttaaga      1320
     gaaactgtaa cacctagccc taagtcctaa tagaattgcg aataaagcga aaatcaaact      1380
     aaaaggaaag tcttatcatt tgtcgttggg ggcaacaata aaaatacgtt gctgcgaatc      1440
     tgccgaccgc tgagcaagcc cagcaaactc aagcgagccc aaaaagca                   1488
//
ID   Gypsy8-LTR_Dya repbase;    DNA;    INV; 337 BP.
XX
AC   chrU;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8_Dya;
KW   Gypsy8-I_Dya; Gypsy8-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-337
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1071-1071 (2009).
XX
DR   Genome; chrU; Positions  820325  819989.
XX
SQ   Sequence 337 BP; 118 A; 94 C; 67 G; 58 T; 0 other;
     tgacggcaca agcatgcctt cacctccccc gaaaccccca cgggcagcga cctacatatg        60
     agacactcaa cccggacaca caccgcagca aagtcatcaa cccacactgg atcagcagag       120
     tcaggattcc caagaatcca accgaagcac tggaaggggc atccgggtga aaagtgccga       180
     cgcaaggggt ttcgcagaac aaaagaattg tacgctaggc taagaggaaa atttattcaa       240
     aaaataaaat cattctgtca ccgaacttcg aacgagtcac tttaaatact taaaatcctc       300
     cttggcttaa agataaaaca gaacagatcc tcgacca                                337
//
ID   Gypsy8-NVi_I repbase;    DNA;    INV; 8264 BP.
XX
AC   AAZX01004364;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8-NVi;
KW   Gypsy8-NVi_I; Gypsy8-NVi_LTR; internal portion.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8264
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1126-1126 (2007).
XX
DR   Genome; AAZX01004364; Positions   14204    5941.
XX
CC   Positions [6550-6975] - Integrase core
CC   LTRs are 92% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           601..1941
FT                 /product="Gypsy8-NVi_I_1p"
FT                 /translation="MRKRACYCSGDECHDRGKINSINKSRDVKMRHEVVKI
FT                 CNKCCIAKSESGERRKSDSGYRNARLAKENKQHGDSKRSSYVHRSRRPPSD
FT                 DDSYDESNDSDDESAEILEPCYIEKGTASQHKNHGSATIRRMTVHQAVNHI
FT                 PYFDGDLDSLNLFCNAVREVLVTYGPEHERFLLLHIANRLKDKATEGYRAR
FT                 TANYSSVEVLLRDLTLHYANIGIADQIYDEISTVEQNPGEFAGEYGLRVGK
FT                 LYNRLRTFVGSAPDLSTADRESRLRQAEQDVLEQFLFGLKQPLDHLVRSKQ
FT                 PQNIDVAIRFVIEFEGKRSARVATFSASPIVKPAAQVRLATATETKLIEAP
FT                 ADGQMNPGTADPANQSAENKFCEYCNSNTHTLIECRTLISHAAKKIIRRPH
FT                 YTRVSGTRRRQNDNRNADENQNKYDNKSNPNSDSRDNRDDEKRKNNSSQGN
FT                 LN"
FT   CDS           4393..6975
FT                 /product="Gypsy8-NVi_I_2p"
FT                 /translation="MLEDSAKQAESGAREERVEKKKLDVDALPPSLLAAWP
FT                 WSGANRKAKLAVNFERREIKGKEGLRCEIYERELSVAAKSENTKNQRKPRK
FT                 ATPSLTDRGNASSSECDDAQAKEARVADKTSDKTRMREESLNRPKPRIIEN
FT                 IADPPGLRLHEIAGRGMSPDPEDIGPPENFDDIPRKYERKVDSSDVDSSAS
FT                 SGNPLIQTYLRKKRCAEPCPTLRRSDDIPGFPPGNCLFFSLLKLSGPELSA
FT                 LQLRQLLASSPLLKSCGEPEETERILESESEYGNVDCAFLFANMFDTDICI
FT                 HFEPPKGVRTFLHIIVRNPKKQIHLNLRGCHFTPYIKTDAPVPSESTLERP
FT                 RDDPPSDNGENAGSKSPILGKNKRALQKQSKLGKHPEVKETDVTNGENPKA
FT                 QNNSEGEVSEPLRPYDSINVSPPQSPPVNTPSITSKLSADAPLSVGSQLTG
FT                 GISGASAGENAEQSNIAKAQAAVEAALANNKLKRCVVARTRPLREKPPWAI
FT                 PEGQEPPLFVHLQALNEHPFRFQENLLYLVSADNYLESEVQNALVERGYLN
FT                 VEVTLEKACKLGEVNITEHKGCDLIGLYIKEYIDTRPLKSDILKCLKVLKN
FT                 VLLKKRDTKPSDNSRLLTLSECITFTELFDSVFMNKPLVAVIYKNNLPVPP
FT                 VRNRIKLIREYHEAAIGGHRGRTKTFSRIAADFYWKNMRDDVNQFVARCAT
FT                 CIGNKLIRIKTRQPLLISNTPSLPFAQIEMDFYGPLETTERGNKYILSIQD
FT                 MLSKYIILLPTKHANAKEVARALTERVICVFGPAAAILTDQGTHFQNKVLA
FT                 TLAKIFGIDKFSTTAYHPQSNGSIERMHHTLTEYLRKYVKIASKWDEWTAI
FT                 RQHAYNTT"
XX
SQ   Sequence 8264 BP; 2589 A; 1916 C; 1940 G; 1819 T; 0 other;
     tttacgcaac atttagccct tcggtccacc gctcgctatc atcgaaatta taatctttca        60
     attaaagctc atttaagcct gttttttttc ggctacgggg acgctcgcta gcacggcccg       120
     gacgtgtcac ggatgcgagc ttatcgctac ccgatgacag tttgcgccgc tcatgacgca       180
     ggcatcgcca cgacgcagga gcgggcagac aaccggtggc agtcgagcgg agaagagctc       240
     cccagaagaa tacgaataaa gttccaatta accatactga acagcctagc tcctccaggc       300
     gtgacccacc ctcaactctg ttacaactgg catccctcgg ggaaactgga cgcgaagcga       360
     cgcgcagtca actggatttt ggatttttca ccaaattttt ttttcggaag tgccaattta       420
     caaatcgact gccaccagcc aagaacgtat cacctccaaa attgggaaaa agtggatcga       480
     gactgcaaaa aaaattagta atcttcagtc gaaaagaatc tcacgaaaat cgaaagccga       540
     aaggaaagga atgaaagcga gtgttacgag tcgtccgata ggaacaaggt taatttagtc       600
     atgcgtaaac gcgcgtgcta ctgcagtgga gatgagtgcc atgatcgcgg aaaaataaat       660
     tcaattaaca aatctagaga cgttaaaatg agacacgaag tagtcaagat ctgcaacaaa       720
     tgctgtatcg ccaaaagcga aagcggcgag cgtcgtaaaa gcgatagcgg ttatcgcaat       780
     gcgcgcttag ctaaagaaaa taagcagcac ggcgacagca agcgtagttc ttatgtgcat       840
     cgaagcaggc ggccgccgtc ggacgacgat tcttacgacg agtcgaacga ttcggacgac       900
     gagtccgcgg agatcctcga gccttgctac atcgaaaagg gcacagcgag ccaacataaa       960
     aaccatggga gcgcaactat taggcgtatg acggttcacc aagcggttaa ccatattcca      1020
     tattttgacg gggatctgga tagtctaaat ttgttttgta acgcagtgcg ggaagttctg      1080
     gtaacatacg gcccggagca cgaacgtttt ctgttattac acattgctaa ccgactaaaa      1140
     gacaaggcca cggaaggcta ccgggctcgt acagctaact acagctcggt cgaagtactc      1200
     ttacgcgact taacactgca ttatgctaac attggtatcg ctgatcaaat ttacgacgaa      1260
     attagcacgg tcgagcaaaa tccgggagaa ttcgccggag agtacggact acgagtcggc      1320
     aagctttaca atcggctacg cacgttcgtg gggtcggcgc cggatctgtc aaccgcggat      1380
     agagagtcaa ggttacgcca agcggagcaa gacgttcttg agcaattttt atttggccta      1440
     aaacagccgc tcgaccatct ggtccgcagc aagcaacccc aaaatataga cgttgcaata      1500
     agattcgtaa tagaattcga aggaaagcgt agcgctaggg tggcaacatt tagcgcaagc      1560
     ccgattgtaa aaccggcggc tcaagtacgt ctagcgactg ctacagagac caaacttatc      1620
     gaagcacccg ccgacggtca gatgaacccg ggcacggcag atccggcaaa ccagagcgcg      1680
     gaaaataaat tctgcgagta ttgcaattcg aacacccata cgctcataga atgtcgcact      1740
     ctgattagcc atgcggccaa aaagataatt aggcgaccgc attatactcg agttagcggc      1800
     acccggcgta ggcaaaacga taatcgcaac gcggacgaaa atcagaacaa gtacgataat      1860
     aagagcaatc ctaacagcga tagccgcgat aaccgcgatg atgaaaagcg aaagaataat      1920
     tcatctcaag gcaatttaaa ctagagggac gcccgccgta tccctcgagc atcgggcgtc      1980
     aagtagaact gagagaaaca acaaccgcga tagaaacagc aaccgcgagc gaatcagcaa      2040
     atatcagatt cttgctggcc ggcagacaac cgtcgatcgt gaacgtatct tgcccccagt      2100
     tgaggaagag gcaagggaaa ttttacgcgg attcaggggt cgatatttcg gtagtaaaaa      2160
     agagcgaatt agccccgtgc tatccattcg atgcgagccg tattataaaa atccagggag      2220
     ttacacccgg atgttcgtac acgttggggg aggcaatcgt caagcttcac gggctggagt      2280
     gtaaagtcca cgtagtgcca gatgatttcc cggtagaaaa ttcggggata atcggctggg      2340
     atataataga cgcacataaa ggatgcgtcg acgcatcaag ccaaagttta aagttaggcg      2400
     atgaaaattt gctcttcgat acgaacgaaa aagttactat accccaaggg taaaaatgat      2460
     aatcggtgcg cgcgttcgta gtagtaacgt gagcgtcggg tgggttcctc tcatggactt      2520
     gcacccggac ttgctttttg gaaactttgt ggcagaaaat agaaacggcc gagtattcgc      2580
     cgaatgtatc aacataaacg aaaaggaagt cacgattgcc agtccatggg tatctattcg      2640
     agtgcgagac agtagttgat aatccgcttt atcaagctag ggatgataat tctcccgata      2700
     atgtcggtga attcgcggtg aatttaaggc gcttatttgg taacaaccaa agcaaaaaat      2760
     ataaagaagt tctgactctc aatgaaaaat tacttctaga cgataaaatg cgacgcgaac      2820
     gtgttcaaaa aatcttaggg ctcgctgatc tcgagggatg caacgaagaa gaaatcgagt      2880
     acgtacgcga gattatcaac gatttcccgg gagtattcgg ccttgacggt gaaccacttc      2940
     tggctacgca cttgctaaag cataaaattg tcttaaaatc ggataggcca attaaaaatg      3000
     gtagattcag attccctcca gcattaagag agcatttgtc tcgcgagttg caaaaattac      3060
     aggatcaggg tattattgtt ccctccaatt cgaactattc ctcgtcctta tggattgtcc      3120
     cgaaaaaacc cgacgcacag ggaaataaac gctttcgcct tgtcacagat tttcgcggtc      3180
     ttaatgaagt gacagaggga agctgccacc cgctcccaat caccagcgac ataatcgaac      3240
     acctagccgg cgcggaatat ataacgtgct tagatctcag atagggttat cataagatag      3300
     aaatggaccc cgattcggcg cacttaaccg cgttttatgc ccctgatggg aactatggga      3360
     atcagttaat gcagtttaac cgcatggcta tggggctaaa agaggctacg attacattca      3420
     caaaagccat gtcgctggct atgaaagggc tacaagggga cgaggtagaa atttacctag      3480
     atgatctaat ggtattcagc cagacccttg acgagcacag agtccctctc cgtcgcgtac      3540
     taaaacgctt aatcgacgct aatttatccg ttgaaccaaa aaaaatgtca atttctaaaa      3600
     aaagaagctc atgtgctcgg acatatagtc ggaggcggaa tgataaagac agacccggaa      3660
     aaagtaaaag caatggccga gttcccggta ccgaccaatg ctcataagct gaaacaagct      3720
     ctaggcctat tcagttacta ccaaaggttc attaagaatt tctcgaaaat tgcgtatccc      3780
     ttacattctc tccttcggaa ggatgtcgag tttatttggg gggaagagca gcaggctgcc      3840
     ttcaacgagc tgccgaaatt aatggcggaa gagcccgtgc tgaaatcgcc ggatctctca      3900
     gccgtttatc gtcactactg atagcagcga ctgggccctc ggcgctatcc taagtcaggg      3960
     caagctgggc gcagactagc cgtgcgccta cgcgtcgcgc tgcctcaaag gtagtgaact      4020
     taaatatcct acttacgata aggagctgct tgctatgttc ttcgccaaag agcagtttcg      4080
     acattatatt tacgatagga aatttactat cgtaacagac cacgagagtc taaagcactt      4140
     ccataacaca aagaaacccg atttgcgatt taatcgtctt aaggctgcgt taaccgggta      4200
     cgactttggt atcgtgtatc gtcctggcgt aaaaaatgcg aacgcggacg cattatcgcg      4260
     aagtcccgta atagaaaagg gagaaatcaa cccagagttg ccgcgcgccg aattgagaaa      4320
     ataaatcaga tccgacggaa tttgacgccg ccgtagagct ttctcaagtc ggcgtgcgaa      4380
     agtcctctgg cgatgctaga agattccgcg aagcaagcag agtcaggagc tcgcgaagaa      4440
     agggtcgaga aaaagaaact cgatgtcgac gcgttaccac caagcttact cgcagcatgg      4500
     ccgtggtcag gcgctaatcg taaagcgaaa ctagccgtga atttcgagag gcgagagatt      4560
     aaggggaaag aaggcctacg gtgcgaaatt tacgagcgag aattatccgt cgctgcaaaa      4620
     tccgagaata ctaagaatca gcgcaagccg cggaaagcaa caccaagtct gacggaccga      4680
     ggtaacgcga gctctagcga gtgcgacgac gcacaagcta aagaagcaag agtcgctgat      4740
     aaaacttctg ataagacacg tatgcgcgaa gaatctctga accgtccgaa gccccggata      4800
     attgaaaaca tagcggaccc tcccggattg agacttcatg aaatcgctgg taggggtatg      4860
     tctcccgatc ctgaggatat cggtccaccg gaaaactttg acgatattcc cagaaagtat      4920
     gaaaggaaag tagattcatc ggacgtagac tcctccgcta gctcgggaaa ccctctaata      4980
     caaacatacc tgcgtaagaa gcgctgtgcc gagccatgcc ccacactcag acgatcggat      5040
     gatataccgg gatttccacc aggcaattgc ttgttttttt cgcttttaaa actgtcgggc      5100
     cccgagttat cagcgttgca attaagacaa cttttagctt cctcacctct gttaaaatcg      5160
     tgcggtgaac cggaggaaac agaacgaatt ttagaatcag aatcggaata tggaaatgta      5220
     gactgcgcgt ttcttttcgc taacatgttc gacacagaca tatgcataca cttcgagccc      5280
     ccgaaaggtg tacgtacatt tctgcatata attgtaagga atcctaaaaa acaaattcac      5340
     ttaaatctta gaggttgcca cttcacgcct tatattaaaa cagatgctcc ggtcccttcc      5400
     gaaagcacat tggagcgccc tcgagacgac cctccttcgg ataacggtga gaacgcgggc      5460
     tcaaaatcgc cgatcctagg taaaaataaa cgagcgctgc agaaacaatc caagctcggc      5520
     aaacaccccg aggttaagga aactgacgtg actaatgggg aaaatccaaa agcgcaaaat      5580
     aattctgagg gagaagtaag cgagccgttg cgaccatatg actctattaa tgtcagccca      5640
     cctcagtccc cgcccgtcaa cacccctagt atcacaagca agctgagcgc agacgcacca      5700
     ttatcagtag gctcacagct gacagggggg ataagcggcg ccagcgctgg cgagaacgct      5760
     gagcagagca atattgctaa agcgcaggca gcggtcgagg ccgctttagc caacaacaaa      5820
     ctaaagcgtt gcgttgtcgc taggactaga ccgcttcggg aaaagccccc ttgggcgata      5880
     ccagagggac aggaaccacc actttttgtt cacttacaag cgctgaacga acacccgttc      5940
     cgcttccaag aaaacctgtt gtatctggta tccgccgaca attacctaga atccgaagtg      6000
     caaaacgctt tagtagaacg cgggtattta aacgtagaag tgactttaga aaaagcctgt      6060
     aagctaggcg aagtaaatat aacagagcat aagggttgtg acttgatcgg cctatatatt      6120
     aaagaatata tcgatacgcg ccctctaaaa tcagatatcc ttaaatgcct aaaagtccta      6180
     aaaaacgttt tactaaaaaa aagagatacg aagcctagcg ataattcgag acttttgaca      6240
     ctgtcggaat gtataacttt tacggagctt tttgattccg tttttatgaa caaaccgttg      6300
     gtagctgtaa tatacaaaaa caatctaccg gttccacccg taagaaatcg cattaagtta      6360
     attcgcgaat atcatgaggc ggccatcggc ggccaccgtg gtagaacaaa aactttcagt      6420
     agaatagccg cagattttta ttggaaaaac atgagagacg acgtaaatca gtttgttgct      6480
     cgatgcgcaa cctgtatagg taataaattg attcgtatta aaacgcgtca accgctgcta      6540
     atcagtaaca cgccgagttt gccattcgct cagatagaaa tggacttcta tgggccgctg      6600
     gaaacaacag agcgcggtaa caaatatatt ctatcaattc aagacatgct atcgaagtat      6660
     attattctac tccctactaa gcacgcgaat gcaaaagagg tcgcccgcgc tttgacagaa      6720
     agagtaatct gcgtattcgg gccggcggca gcgatcctga cggaccaggg aacgcacttc      6780
     caaaacaaag tactagcaac ccttgcaaaa atttttggaa tagacaaatt cagcacgacg      6840
     gcctaccatc cccaatccaa cggatcgatt gaaaggatgc accacacatt aactgaatat      6900
     cttcgtaaat atgtaaaaat cgcgtccaag tgggatgagt ggacggcaat acgtcagcat      6960
     gcctataaca ccacctagca cgagagcacg cagtacacac cgcacgaaat cgtgtttggc      7020
     gtaaaaccgc gcacgccatc tagctttcca ctggttagcg acaacatctt atataatgac      7080
     tatattaaaa atatggtagg aaatttaacc gatctacaaa cagccgcggc gttgaactta      7140
     gtacaatcta aatatcgttc caaattttat tatgatataa ataaacctaa gaaaggcaag      7200
     ttcagacaga gtaccgaggc cctgttgaaa ttataagcat taatagaaaa actaataata      7260
     tcacgataca gcatgacaca gcaatcgaaa cagtgcacgc taataaattg aaaatgccat      7320
     gtgaaattgc gaaactggct gccgaatcat ccggcgaccc cgaagaataa gcgtttcctt      7380
     tttactgttt ttttttgcac ggcaccggac gtgccgcgca aaagagtaac aaaaaaaaaa      7440
     cgggtaaatt actaacattt gaaaaatcgt gacgcgtgtc gtattccacc ggagagccga      7500
     gcattcgcaa ttagctaaat tgtaaacaag gttgtgtaat aaattttcag atgtatctgc      7560
     gcagcagcag cgctagaaga tcagacagtg tccgaaagtt ccataagagc gatccatgtt      7620
     ctagatcaaa atttaggctt aattacagaa aaaatcgcac cattagctac atcgagtacc      7680
     aattggaaaa ttatacaaaa aattgactta acaccgtatt ttagagcaag cgcagaacta      7740
     cctagtcgca tagccaaatt tggcagggcg tgtgggtgga gatgcacaaa tgaaaattta      7800
     tttgaggaaa cgacagcagc ggctcgtcag gccgaaagag tattagatct actcctcgtt      7860
     cacagcccag tagaagagcc gcgccgcgcc cgccgatccc tgttgccatt cgttggcact      7920
     ctgcataaat ttctttacgg aactctaaat gaggacgacg agcgcgagat ccagctggct      7980
     ataaagacag tggccagcga cgcacgcata acagcagcat tacttgcgaa tcaaacggaa      8040
     atagttgaac gcaaattatt tgacctaaac gagaaaatag taaagttaca ggcagccact      8100
     gacatcctag gcaataagac ggcgaacttg gacaaagaga ttagcattca aagcgcaatt      8160
     tcaagcacta aagatggcct tattcagttc aggcaagaaa ccgaaacgct aacggatgcc      8220
     attctttttg ccgccaaggg cctgattcac ccgcgaataa tacc                       8264
//
ID   Gypsy8-NVi_LTR repbase;    DNA;    INV; 2026 BP.
XX
AC   AAZX01004364;
XX
DT   05-NOV-2007 (Rel. 12.11, Created)
DT   05-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8-NVi;
KW   Gypsy8-NVi_I; Gypsy8-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2026
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1127-1127 (2007).
XX
DR   Genome; AAZX01004364; Positions    5940    3915.
XX
SQ   Sequence 2026 BP; 656 A; 461 C; 404 G; 505 T; 0 other;
     tgcggagacc attgcacgcg cagctacaac ggttgctaac acggtaacag atgctcgatt        60
     cccaatcccg gccgaaggtt tatcaaccat tccaataatg aaaatttcaa aattaacagt       120
     catattttcg aatggctcct taatttacca catagcaatc cctttattaa gtatagaaaa       180
     attcaacctg ttcaaggcat caccgttacc ggcagttcag catgttttta gcataccgaa       240
     tgtggatagc cgcttatata tggcccgagt ttgtttattt cgcggtaagc aagtcgaacc       300
     ggacgtacat gccgctcctg ccggaggaag tcgtgggcct ccgaaaatta ggtgaactaa       360
     ggatcgtggt agatccggaa ccagtccgcg agatacgcga aaacactgct tgcgaaataa       420
     aaatcgccgc cggcaaaaag atcgccaacc ccgaaatatg cgatatacgc atcagacagc       480
     ttagagactt attctggcta cggctatata aagccaacgc ttgggtcttc tcaactagga       540
     ccccagagtc gatcttcgtg cagtgtttgc gagccgaaca tatcaccgat aaaatcaacg       600
     gtatcgggat actagaactc cgccccgggt gcttcgctta taccgccaat gcacgcctga       660
     cagcttcacg ttccatcacc tcgttcttaa acgattccca tttcgaaaca gtacagttca       720
     acgtatcgaa aattctagcg gtgctgaatg aatccgctca tgccgaagcc gagttagaaa       780
     aaacgattgc aaccgcggcg gacagtcgag tcaaaggctc gcacggggta aatctagaaa       840
     gcctgaaaac gggagccagg cttcacgaaa tagctaataa agctagcgaa atcgctcagc       900
     gcaaatcaac gaattttgaa ttacgaaatc taggtaatta tacctctatt ttcgggtttt       960
     ctttaacatc tgtcttaaca gtaattagtg gaataatcat cggaggatgt ataatttacc      1020
     gccgacgcgc gaacaatcct cttgctcgct taatcaagca acaagaaaat ttgattgctc      1080
     tagagcaaac gcgaaaattt tctcgcgaga gaagagctca gttttcggaa aatatagccg      1140
     aataagaagc atcttatttt cactttctct tttcttccta agtaagttct agcaaagcgt      1200
     agagttaaga aaggcggtat tcgggtgcgt aaaatagaac accaccttgt cgcgcggcat      1260
     aacacaacat ctcgtcgcgc tatcgctgct cgctcacctg gcggctaccg gggaaggagt      1320
     aacatcacgt cccttcccat gaatacgcac cgggctcggc acctagtcgt attaagaata      1380
     ttcgcaataa tgtcaaaaaa aagcaaaatg gaaagccaag ctgggaaaaa aagggacaca      1440
     aggtcatgcg agaccccgcg atcctaatcc taagttagtc ttaagattta cagtcacgca      1500
     agataaacgg cggactggaa aataaacaaa atgttccctt atattataat cgcagtttca      1560
     attacagctt ctggcaaaac caggccatga aaaaaacata atagataagc aacaattctt      1620
     gtacgataag gtaaggcctc aaggtcgacg tactgtattt tgtagccctt tacactataa      1680
     ttaccatata taatctctta tagaataaag ccacgaggcc aatattttgt acttccattt      1740
     ttataatctt ggaaactaag tttcacacta ttttgtactt ttgctgtgta agttatagaa      1800
     aataagattc atgtaaaaag gggagctcta aacacttttg taaacggcag cggccgcatt      1860
     tagctacaca atcgggacaa caacacaaac actcacgcac accaaatgca aagatattag      1920
     aatctaatag aaatccaaca agcgctggca tccctattaa ttgtaagatt tgtattttgt      1980
     ttaacaaaaa aaaaaccatt tcagaattgt aaagtaaaat cgaaca                     2026
//
ID   GYPSY8_I    repbase;    DNA;    INV; 4347 BP.
XX
AC   AE003788;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   GYPSY8_I is an internal portion of the GYPSY8 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY8_LTR; GYPSY8_I.
XX
NM   GYPSY8_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4347
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY8, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(8), 30-30 (2002).
XX
DR   Genbank; AE003788; Positions   10883   15229.
XX
CC   GYPSY8_I is an internal portion of the GYPSY8 endogenous
CC   retrovirus.
CC   GYPSY8's long terminal repeat is listed in Repbase Update as
CC   GYPSY8_LTR. GYPSY8 is relatively old family: GYPSY8_I is flanked
CC   by
CC   7% divergent LTRs. The internal sequence is incomplete because
CC   of deletions.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(288..884,888..1241,1245..1676)
FT                 /product="GYPSY8_I_1p"
FT                 /translation="ELDPVRRGFVPNPAQACHRCGGQGHWSQECRNRPINF
FT                 CWTCGRIGPRTSECCHRSGNAMRPQPQRGNQGSQELMAKLKAEERQLSATV
FT                 LIDGVEIKATGGQVAGGRRGLTYEERSENGRWTVRRSHIGDRSQHRIWRED
FT                 RSDATADPTQHNRRTGIGLGFPNESGSTYGVRRTERNNTSLLNGTKQAKGK
FT                 AFSGSRGEGLLREGRGRIPEVGVDQFRKHTRDVNRDSAPNNDEGRSTSQAA
FT                 VLSEKPQDYGLGAALTQHSERGERVISYSSRTLNAAERNYSATEKECLAIL
FT                 WVVRKLRPYLEGRCHHGPYGSEVAEHLESVRQDSKVGVRAATVRFRNLVQK
FT                 GPVEHRRGRAFKTTSAGDEPKSERGGRRTMERAAGMEEMQRKVKQQPQKFP
FT                 DYLEEDGKLPHRAGNEDVASCKMCVPIGQRQCVMTENYDIQLRDTWEVARR
FT                 LPGLQLVFIGRECIET"
XX
SQ   Sequence 4347 BP; 1252 A; 1002 C; 1423 G; 670 T; 0 other;
     gccgtgcgca aaaagggaaa taacgggatc cctgcggcct ataaaaggta ggcgctagca        60
     cggatgcggg gcagtcagtg agacagcaag atcgcgcgtg gaaggagata gtgcgtcgaa       120
     gcgttaccag taggagttcg ggagtgagag cgcgcggtca agtaacaaac agtggatgcg       180
     tcggcggcaa aaagcccgaa ggacacggaa ggaagatcac tacaagcgag tacagaaggt       240
     gccaggatga caccgcaggc ccgtcgagga acgacaacaa cagatgagaa ctggacccgg       300
     tgcggcgcgg ttttgtgcca aacccagcac aagcctgcca cagatgcggt ggccagggcc       360
     actggtctca ggagtgcagg aaccggccga ttaatttttg ctggacctgc gggagaatcg       420
     gtccaaggac ttcggaatgc tgccacagat cgggaaacgc catgcgaccc cagcctcaga       480
     ggggcaacca gggttcgcaa gaattaatgg ccaaactgaa ggcggaagaa aggcaactgt       540
     ccgccacagt gctcatagac ggagtagaga taaaagccac tggcggacag gttgcaggcg       600
     gcaggagagg tcttacctac gaggagagaa gtgagaatgg cagatggacg gtacgaagaa       660
     gtcacatcgg tgatcgaagt caacatagga tttggcgaga ggaccgttcg gatgcaactg       720
     ctgatcctac acaacataat cgacgcactg gtattgggtt gggatttcct aacgagagtg       780
     ggagcacgta tggagtgcgc cggactgagc gtaacaatac cagtttgctc aacgggacaa       840
     agcaggccaa gggaaaagct ttcagtggca gtcgtggaga gggctgactt ctcagagaag       900
     gacgtggacg aattcctgag gtcggagttg accagtttag aaaacataca agggacgtca       960
     accgtgacag tgcaccgaat aacgatgaag gacgatcaac cagtcaagca gcggtactat      1020
     ccgaaaaacc ccaagactat gggctgggcg cagccctcac acagcattcc gagcgaggcg      1080
     agcgagtaat ctcctactcc agtagaacgc tgaacgcagc ggaaagaaac tactctgcaa      1140
     cggaaaagga atgtttagca atattatggg tcgtcagaaa gttgagaccg tacctggagg      1200
     gccgatgtca tcacggacca tatggctctg aagtggctga atagcattta gagtccgtcc      1260
     ggcaggatag caaggtggga gttagagctg caacagtacg atttcgaaat ctcgtacaga      1320
     aagggccagt tgaacatcgt cgcggacgcg ctttcaagac aacctctgca ggagacgagc      1380
     cgaagagtga gcgtggagga cgacgaacaa tggagagagc agcagggatg gaggagatgc      1440
     aaagaaaagt gaagcagcag ccgcagaaat ttccggacta tttggaggag gacggcaagc      1500
     ttccgcatcg ggcgggcaac gaggatgtgg catcgtgtaa gatgtgtgta ccaatcggtc      1560
     agaggcagtg cgtcatgacc gaaaactacg acatccaact acgggacact tgggaagtag      1620
     caagacgatt gccaggattg cagctcgttt ttattggccg ggaatgcatc gagacataag      1680
     aaagtacgtg cgaaactgcg agagatgcat gaagtacaaa cccagccagc tacaggcggc      1740
     cgaagaaaag gttaacacag gagccggtag aagcatgggc aaccgtgtgc gcagatttcg      1800
     tggccccttg ctgcggttga aacacggaaa tgttcgtgca gttcacaagt agggcgttca      1860
     ggaggtttct ggatgagctg ggggtgcgac accagctcac ggctccatat actccgcaag      1920
     agaaccctac ggaaagggcc aacaggaccg tcaaaacaat gatcgcttaa ttcacaagtg      1980
     ccgatcagag gacatgggac gagcagtggc cggagctgca gctggcggtt aacacaagtg      2040
     tggcggatca caggatactc gccggcgttc ataacacagg gaagggagcc gagtctgccc      2100
     aacgcgttgt ttacgaaaag acgaccggga ccggcaagtg cacgcagaca ccagcggaaa      2160
     acgcggagaa attgaaggat atcttcgaga tggtgcggag aaacatggag agggcggcac      2220
     aggatcaggc acgccactat aatctccgaa gacgaaggtg ggggacacag catgggccaa      2280
     agagcaccac ctgtcaaagg cagccgaagg tttcgaggca aaattggccc cgagatttga      2340
     cgggccgtac acaataaaga agttcacatc accagtaata tgcgtcctag aacacaacac      2400
     aaccaaaaaa gaaaagacgg cacacatcag cgatctgaag ccgggaagtg cgggcgccgg      2460
     cgtgccagga gacttcgagg aataaacgga aaaaaaaaca caaaacgttg gtgaggaagg      2520
     ggggaagacg atacaaggta tcgatacgga tcagaagtca acatcacaca cacacacaca      2580
     caggcccgtc agagcgcgag agcgggacag ggagggtacg cagccaagaa ccgttaacgg      2640
     gtaacacaca cactcagctg cgaattccgt gggaggcgag tgtacggacg agaaaagctc      2700
     cgttaccggt acgggcccac ggaataacgg cacaaggagc agaaagaaaa ccgaggtttc      2760
     gttgcggaga gtgcggctcg agtctgtctt ttcaaattcg agatcgtcat ggcagcacac      2820
     agttttcacg gccggggagt acgagagacc ggcgccgggg aacagcccgg ggcgatatgg      2880
     gattccgatt cctatctcca gctcctggcg tcacccctgg tatcgcgatc tccatccccg      2940
     gggagtgggg aggacccgga ggaaattccg gacgtggaac ttgaggaaga ccaaccgatg      3000
     gcggatacgg agggcgcggc tgaggtcatc accctctctt cggagagtga ggaacatgac      3060
     gacggaggcg aaacggtcac cccggagttg tcatcggacg aggatgagac cgcgcggatg      3120
     gcttaccgaa gcgtccggcg ggctacgcag ggccagtcgt gccgccgacc gaggatccgg      3180
     tggacatgaa gagattcatg gaggagcgag tcgccaccct gcggcgattc cagcagatgg      3240
     tggatgagcg aaaggtcgcc gacgccaagg ccgaatggca ggagcggttg gcttggctgc      3300
     aagaggaaga agcgttgtgg gcaccaacag gggagaagag cccgggagaa gcgaacccgg      3360
     agaagagtgg agctggcccg cgccagatga ggcgccgcca ccaccaaagc cgcgcggcaa      3420
     ggggcgcggg ggcgaaaggt gcactgggcg aagttgttag agcttggcgg gcttcaatgt      3480
     gcggggggac ggagaggtaa aagtcacgat atcagaataa aagataccgg acggcaaaaa      3540
     acaaaccgta tgtccgagtt tgtcgtaaac gggcactggc acaataactt aaacaaaaaa      3600
     tggttgcggg tgtcatctgc agcagccgaa ttaacgcgcg agggggtgac gcgcggccag      3660
     gcacgcaggc cggcaaacga cgcgtggctg ctgctggcgc gggacgaagg aggggccgtt      3720
     gcagatgcaa gcgatcctcc ggggcgctcg gggccagggg cagccacccc agagcatgaa      3780
     ggggcataca tgtgttggtg gagctggaaa gaagagagga ttcgttaata tggcgatacg      3840
     caagaaagcg ttagactcac ctttcaatga gctgctacac cggatcacgt gtgaaaaaga      3900
     attgggatgg tggcgtcgcg ataatggcga ccgatcgata gtgtgatcga tagaaatact      3960
     ggatgagcac ggatgcgcaa atgcggccac actgtgggca gcgatccgca cgcgatggca      4020
     gcgccggaat atcggtagtg acaacgccgc ttaccgatat cgataacacg agttcggcaa      4080
     tgttgccagg cgggaaaatt caaatatcga actggtggag cagagcagac agcagcagca      4140
     catggaaggt gaaagaagac cgctaggaca gaggagaacg gagaaggata tgtgaagggt      4200
     caagatgccc cgtcgagatg gctaacgcca aagctgagac cagaaggatg taggacaacg      4260
     agcggagaag ttggaaggaa gagacaccgg agcggaggac cgtcgggatc attaagtttt      4320
     taaaatcttc tgaagaaagg gggagat                                          4347
//
ID   GYPSY8_LTR  repbase;    DNA;    INV; 304 BP.
XX
AC   AE003788;
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   GYPSY8_LTR is a long terminal repeat from GYPSY8 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY8_I; GYPSY8_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-304
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY8, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(8), 31-31 (2002).
XX
DR   Genbank; AE003788; Positions   10579   10882.
XX
CC   GYPSY8_LTR is a long terminal repeat from GYPSY8 endogenous
CC   retrovirus.
CC   The internal portion of GYPSY8 is listed in Repbase as GYPSY8_I.
XX
SQ   Sequence 304 BP; 89 A; 65 C; 100 G; 50 T; 0 other;
     tgaggagtct taaaactccc cataaatctc gtgtagggga gtggcatagc aacagccgcg        60
     gtgcagggta aagcggaaag accgtgaatt acagtacagt actggacctt gaactccagc       120
     gggtcaaggg cgaagaggtc gaacggtaac ggtgcgtgca caaagaagac ggacggtgaa       180
     ctaacggtat cgctctgaaa cttggagcgg gccaagggca aataggtcga acggtaacgg       240
     tgcgtgcgca aagaggacgc accgtgaatt aaaggcacaa tatgtggacc ttgtacccgg       300
     gcgg                                                                    304
//
ID   GYPSY9-I_AG repbase;    DNA;    INV; 5973 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   GYPSY9-I_AG is an internal portion of retrotransposon GYPSY9_AG -
DE   a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag;
KW   AP protease; GYPSY9-I_AG; GYPSY9-LTR_AG; Gypsy clade; RNase-H;
KW   integrase GYPSY9_AG; mdg1 lineage; reverse transcriptase.
XX
NM   GYPSY9-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5973
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY9_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 177-177 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY9_AG is a family of Gypsy-like LTR retrotransposons
CC   that, according to the amino acid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY9-I_AG consensus was reconstructed after multiple
CC   alignment of 12 copies.
CC   The consensus encodes the 458-aa GYPSY9_AG1P gag-like protein
CC   (pos. 890-2263) and the 1175-aa GYPSY9_AG2P (pos. 2215-5739).
CC   The sequence of the LTRs flanking GYPSY9-I_AG is deposited as
CC   GYPSY9-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           890..2263
FT                 /product="GYPSY9_AG1p"
FT                 /note="gag-like protein"
FT                 /translation="KQYEKGMITISDKIEILKYIFKKIQDPNQRTCTRTQL
FT                 RIKAEETFKEIQNDIEKNRYKYTFNKLLEFSKISNALIQNIIAMSTSKTND
FT                 DSRNKSSDFSTNSSEDKNINLTLLTTSRLSFKLLAQIIFVLLKLHKKIKMA
FT                 NFDIKTATGLVPTYDGSPDTFNAFEDASTLLFELNPNHEEMLVKFIRTRLT
FT                 GKARIGLPSNITTFNELISDIKRRCEEKTTPDKVIAKLKSIKTRDAQSICN
FT                 EVELLSEKLKVIYLKQGIPEKIANDMAIKTGIDTLKEKVANSETKILLKAG
FT                 TFATITDATQKVMENESEETNRTTNVLNINTQRYNRNYPRNQGNQNRNNQN
FT                 NYGPNTNQPYRNYYNNRNNNNFNNRNNNNSSYNNNLRNNIRYNNRFIQGYN
FT                 NERYNSNFNGNQNRPNKNLRAITNGETGQQQRNIYHTTAQIQEVEENNFLD
FT                 QQESTQTLDQFTH"
FT   CDS           2215..5739
FT                 /product="GYPSY9_AG2p"
FT                 /translation="FFRPTGVNSNPRSIYSLELNGVDYIKIRLSIANNETS
FT                 ILLVDTGASISLFKASKLKKNHGPIRSDSISLTGISNTPIYSKGSTTCTIY
FT                 FNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYHLEMLTFTCQGE
FT                 EIQHNIEEDDGKGFILPIRSEVVRKVYLPNITEDTIVFAQEIQPGVFCGST
FT                 IISKDNQLIKFINTRQRNIYITNAEFKPITEPLANYEVKQVNNKVGEINND
FT                 RLQKLLQKIKVDKIPTTEIYNLKKIVTEYNDIFCVEDDPITTNNFYPQKIE
FT                 LKDNIPTYIPNYKQIYSQADEIQNQVDKMLKNDIIEHSVSPYNSPILLVPK
FT                 KSTDDNKKWRLVVDFRQLNKKVIPDKFPLPRIDTILDQLGRAKYFSTLDLM
FT                 SGFHQIPLENDSRKFTAFSTGSGHYQFKRMPFGLNISPNSFQRMMAIAMAG
FT                 LTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLRSYNLKLNPEKCSFFKT
FT                 EVTYLGHKITDKGIYPDDSKFETIRNFPLPKNADEVRRFVAFCNYYRKFVQ
FT                 NFAKIAKPLNNLIKKNVKFIWTDECQKAFNSLKESLLSPAVLKYPDFTKEF
FT                 ILTTDASDVACGAVISQITDGKDHPIAYASKSFTQGEKNKPIIEKELTAIH
FT                 WAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKI
FT                 EFLAGKTNVVADALSRIITDSDELKASIPKNKSDISNPILMVNTRAMIKKN
FT                 NVVENKENKKKKEDIIEEYNPTNMYETDRPSDTTKMLKMKSNINEKDEFIE
FT                 LVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLIARKYHKNLAIASN
FT                 DRLFEFYSMSTIKEIINKMITDVHIVVFTPPRLVEDTEEQIKIMSNFHTTP
FT                 SGGHIGQFKLYSKIKDKFKWKNMKADIIKYVKSCKACATNKILKHTKEKTV
FT                 VTTTPSKPFNIITIDTVGPLPKTANNNRYAVTIQCALSKYIVIIPIQNKEA
FT                 NTIAKALVENFILTFGNFLEMRSDQGLEYNNEILAQISKILEIKQTFAAAY
FT                 HPQTIGSLERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSTTNF
FT                 TPFELIFGRQANLPQELYKTKVELLYNIEQYYNEMKFKLQKSHEIAKQKLI
FT                 QAKLQRQAKLNENINK"
XX
SQ   Sequence 5973 BP; 2513 A; 996 C; 950 G; 1514 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac aggcagaagt gtaagcaaat tatttcaagt        60
     aaaatgtgat acgtacaacg gtaacgtaaa gcttaagtgt cgtgtgacga accaaaagta       120
     ttgtgaccat aaccggcatt cggcggaaag tgaaaaaaaa agtgtcaaat gtgcaatttt       180
     tttttacgga acattcatca acgcagctgg cgcaagtaac ccatatgtaa acaaaagcaa       240
     taacgatgaa agaacagcta caagcaagtt tcgtacagtg cagaatgaaa aataaaaaca       300
     tttagtgcag tgtaagtgcg aaatgaatgt ttaattgatg aacaaacatt aaccgtacac       360
     agtgttgtga gaacctacct aaatgtgtaa aaacgtatta acgctcatgc gatcggttta       420
     cctagtagag taaccttgaa atgggtaaac tatagaaaaa agcacacttt gttaaaaagg       480
     gttgttgtta cccaagttca gcacagtaca gtatagcaat ctatacgatt cttggagcaa       540
     gtgatatgga atgataaagt gcagtgcaaa acaagctgtg gtcagtgtga ttgaatggaa       600
     caaccgttcc caccgtggaa gacgaaaaga aaaaccgagc ccactgccta atctggattg       660
     gcagacgaga atgaacaagt gtcccaaccc cgacaagaca tcgagcgaca actgatgaca       720
     tcgtggaaat tcacaccaag caccgattaa actgcaagca ccggtataaa tacagcgtag       780
     aatcagcagc aacaaaatgc acgtcgcata ttccattaag gtactgtaac tttaaaatat       840
     ggtcaaatgg gttttcaaag ctaggaaata ggaaatagga agtaattgaa aacaatatga       900
     aaaaggaatg attactataa gcgataaaat cgaaattttg aaatatatat ttaaaaaaat       960
     acaggatcct aatcaaagaa cttgtacaag aacacaacta agaattaaag ctgaagaaac      1020
     atttaaagaa attcaaaatg acatcgaaaa aaatagatac aaatatactt ttaacaaact      1080
     attagaattt agcaaaattt ctaatgcatt aatacaaaat atcattgcta tgagcacatc      1140
     aaaaaccaac gacgattcac gtaacaagtc atctgatttt tctacaaata gctcagagga      1200
     taaaaatatc aatttaacac tgttaacaac tagtagatta tcatttaaac tcttagctca      1260
     gatcatattt gtcttactaa agctgcataa aaaaattaaa atggctaatt ttgatattaa      1320
     aacagccaca ggtcttgtac ccacatatga cgggtcaccc gataccttta atgcatttga      1380
     ggacgcttca acgctattgt tcgagttaaa tccaaaccat gaagaaatgc tcgtaaaatt      1440
     cataagaacc agactgactg gtaaggctag aatagggtta cctagcaata taacgacttt      1500
     taatgaatta atcagtgata taaagagaag atgtgaagaa aaaacaacac ctgataaagt      1560
     aatagcaaaa ctaaaatcca taaaaacaag ggatgcacaa tcaatttgca atgaggtcga      1620
     actactttca gagaaactga aggtaattta tcttaaacaa ggaattccag aaaaaatagc      1680
     taacgatatg gcaataaaaa caggtatcga cacacttaaa gaaaaggtag caaactctga      1740
     aactaaaata ctgttgaagg caggtacttt tgcgacaata accgatgcaa cacagaaagt      1800
     aatggagaat gaaagtgaag aaacaaacag aactactaat gtccttaaca taaatacaca      1860
     acgctacaat agaaactatc ctagaaacca aggtaaccag aataggaaca atcaaaacaa      1920
     ctatggtcca aatacaaacc aaccataccg aaactactat aataacagaa ataataacaa      1980
     cttcaacaat cgaaataata acaatagcag ctacaacaac aatctgcgaa acaatattcg      2040
     ctataacaac agatttattc agggatacaa taatgaaaga tacaactcca acttcaatgg      2100
     taatcagaac agaccaaaca aaaacctaag ggcaataaca aatggagaaa cagggcaaca      2160
     acaacgaaac atataccata ctacagctca gatacaggaa gtagaggaaa ataatttttt      2220
     agaccaacag gagtcaactc aaaccctaga tcaatttact cattagagct aaatggagtt      2280
     gattatataa agattagatt gagcattgca aataatgaaa catcaatatt actagttgat      2340
     acaggagcat caatttcttt attcaaagca agcaagttaa agaaaaatca tggcccaata      2400
     cgttcagact caatatcatt aacagggata tctaacacac caatttattc aaaaggaagt      2460
     acaacatgca ctatatattt caacaatcta gaattggaac acgattttgt attagttcca      2520
     gatgaattca acataggagc agatggtata ttaggcagag acttttacaa actatacaga      2580
     tgttcaatta attatcattt ggaaatgctt acattcacgt gtcagggaga agaaattcag      2640
     cataacattg aagaagatga tggaaaagga tttattttac caatcagaag tgaagtggta      2700
     cgtaaagtat atcttccaaa cattacagag gataccatag tcttcgcaca agaaattcaa      2760
     ccaggagtat tctgtggcag cactattatt tcaaaggata atcagttaat taaattcatc      2820
     aatacaaggc agagaaatat ttacataaca aacgcagaat ttaaacccat tacagaacca      2880
     ttagcaaatt atgaagtgaa acaagtgaat aacaaagtag gagaaattaa taatgataga      2940
     ttacaaaaac tattacaaaa aattaaagta gataaaatcc ccactacgga aatttataat      3000
     ttgaagaaaa tcgtaactga atataacgat atattttgcg tagaggatga tcccattact      3060
     acaaataact tttaccctca gaaaattgaa ttaaaggata atattcctac gtatataccg      3120
     aattataaac aaatatactc acaggctgat gaaatacaaa atcaggtaga caaaatgctt      3180
     aagaatgaca taattgaaca ctcagtctcc ccatataact cacctatatt attggttcca      3240
     aagaaatcaa cggatgataa taaaaaatgg agacttgtag tagatttcag gcagctaaac      3300
     aaaaaggtta taccagataa atttccatta ccaagaatag atacaatatt agatcagcta      3360
     gggagagcaa aatattttag cacccttgat ctcatgtcag gattccatca aataccttta      3420
     gaaaatgatt caagaaaatt tacagctttt tcaaccggat cagggcatta ccaatttaaa      3480
     cgtatgccgt tcggtttaaa cattagcccc aacagctttc aacgcatgat ggctatcgct      3540
     atggcaggat taactcctga gctagcattt gtatatatag acgatataat cgttactggc      3600
     tgcagtgcac ggcagcacat cagtaacata gttaaggttt ttgataggtt aaggtcttac      3660
     aatttaaaat taaatccaga aaaatgttca tttttcaaaa cagaagttac ttatttaggt      3720
     cataagataa cagataaggg tatataccca gacgattcta agtttgaaac aattagaaac      3780
     ttccctttac ctaaaaatgc agatgaagta cgaagatttg ttgcattttg taattattat      3840
     cgtaaatttg tacagaattt tgcaaaaatt gctaaacctt taaataacct aattaagaaa      3900
     aatgtcaagt ttatttggac agatgaatgc caaaaagcat ttaatagttt aaaagaaagc      3960
     cttttgtctc cagcagtctt gaagtatccg gattttacta aagaattcat actaacaact      4020
     gatgcttcag atgtagcatg tggagcagtt atttctcaaa tcacagatgg aaaagatcac      4080
     ccaatcgcgt atgcaagcaa aagcttcacg caaggagaaa agaataagcc tatcatagaa      4140
     aaggaactta cagcaattca ctgggcaatc aattatttca aaccatatct atacggcaga      4200
     aaattcaccg taaaaacaga tcatagacca ttagtatacc tgtttggtat gaaaaaccca      4260
     acatctaaac taacaagaat gagactagat ttagaagaat ttgattttaa aatagaattt      4320
     ttagcaggta aaaccaacgt agtagcagat gctttatcca gaattataac tgattctgat      4380
     gagcttaaag catcaattcc aaaaaataaa tcagatatat caaatcctat tttaatggta      4440
     aatactagag ctatgataaa gaaaaacaac gttgtagaaa acaaagaaaa caaaaagaaa      4500
     aaggaagata taatagaaga atataatcca acaaacatgt atgaaacaga caggccatct      4560
     gatacaacta aaatgttgaa aatgaaatca aacattaacg aaaaagatga atttattgag      4620
     ctcgtgatat acaatcacaa ttattataaa gcgctgggaa aatttaaaat acccataact      4680
     tctgcgaagc aaagtcaaac actagagttt gtactgcatg aatcatgcct aatcgctaga      4740
     aaataccaca agaatttagc aattgcatcg aatgacagat tattcgaatt ttactcaatg      4800
     tcgaccataa aagaaataat taacaaaatg ataacagacg ttcacatcgt cgtatttaca      4860
     ccacctagac tggtagaaga tacagaagaa cagatcaaaa taatgtccaa tttccacaca      4920
     acaccatcag gaggtcatat aggacaattc aagctgtata gtaagataaa ggataaattc      4980
     aaatggaaaa atatgaaagc ggatatcatc aagtatgtaa aaagttgtaa agcatgcgca      5040
     actaataaga tcttaaaaca tactaaagag aaaactgttg tgacgacaac accctctaaa      5100
     ccttttaaca tcataacgat tgataccgta ggtcctttac caaaaacagc aaataataat      5160
     cgatacgcag ttacgatcca atgcgcatta tcgaaatata tcgtaatcat cccgattcaa      5220
     aacaaagaag caaatacaat agcaaaagca ttagtagaaa attttattct tacatttgga      5280
     aactttttag aaatgagatc agatcaagga cttgaatata acaatgaaat tttggcacaa      5340
     atatcaaaaa tattagaaat caaacaaaca tttgcagcag catatcatcc acaaacaata      5400
     ggatctttag agcgaaacca tagaagttta aatgaatatt tacgaagtta caccaatgag      5460
     catcatgatg actgggatca atggactaaa ttttatgaat tcgtttataa cacatcagta      5520
     catagcacaa ctaatttcac acctttcgaa ttaatatttg gcagacaagc taatttacca      5580
     caagaattat ataaaacaaa agtagagcta ttatacaata tagaacaata ttacaatgaa      5640
     atgaagttta aattacaaaa atcacatgaa attgcaaaac aaaaacttat tcaagcaaaa      5700
     ttacaacgtc aagcaaaatt gaatgaaaat ataaacaaat gaaacatacg aataggagat      5760
     tatgtctatt taacaaacga aaatagaagg aaattagatc cagcttatat aggaccattt      5820
     acagtcttag aaattacaaa tacaaactgc gttataaaac acaatcaaac aggaaaaacc      5880
     acaacagtac ataaaaacag attaaaacat ttttagtgaa taatgcactc tttcgtataa      5940
     actcaatcgt acattattca aaaagggtgg agg                                   5973
//
ID   Gypsy9-I_AP repbase;    DNA;    INV; 4042 BP.
XX
AC   Contig13293;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9AP;
KW   Gypsy9-I_AP; Gypsy9-LTR_AP.
XX
NM   Gypsy9-I_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4042
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 453-453 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Positions [3131-3646] - Integrase core
CC   LTRs are 99% similar to each other.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..962
FT                 /product="Gypsy9-I_AP_2p"
FT                 /translation="MQNWGDIWALGDANANNPSANADNSSASANSDPAQTN
FT                 VNAENLPRPLAPTDASAVMPFDISAFSSVRLPGFWRHSPQQWFTHAEAIFH
FT                 NQRVRSDLTRVNHVLAALDEDGVRTIGDLLGADVQYSAVKSRLITAYDVPQ
FT                 ATRFRSIIQHGGMGDRRPSQMLRDMRSALPSGIGESTLKEFWLQKLPPNIL
FT                 AIVSGLDGSLESLAERADRVADASAGHNLAAVSNETDRFHSMENAISALTA
FT                 QIAALVSTQGTQHRPARSQDRSRSKSRNRSKSRTHNDAWCFYHNVYGTKAQ
FT                 KCRDPCSYESEN"
FT   CDS           887..4039
FT                 /product="Gypsy9-I_AP_1p"
FT                 /translation="MVFLPQRLRYQSTEMPRPVFVRVGKLTEAAVVNSPPA
FT                 AHHTYRLFVTDIRSGGRFLIDSGAEISVIPPGNGPRRSSDIVLNAANGTRI
FT                 ATYGPRELHLNLGLAREFVWTFETADVARPIIGADFLHHFGLLVDVRRKRL
FT                 IDCVTNKCVKAISVVNIDVDAIKVVPLPQKWSDILKSFPSVTRESPVPDKF
FT                 LHRIEHELHTTGPPLFSRPRRLPPDRHRIARQEFEYMRQKGICRPSASAWA
FT                 SPLLLVPKKDGTFRPCGDYRRLNEVTRADRYPLPHLHDFTTNLAGNTVFTK
FT                 LDLVRAYHQIPIAKQDIPKTAVTTPFGLFEFPVMCFGLRNAAQTFQRVIND
FT                 MLRGLNFSFAYIDDVLIASRNHEEHEQHVRTVLGRCQDYGIAINPVKCVFA
FT                 VDSLTFLGHNINKDACRPTSERITAIHEWPLPATKKSLQRFLGSVNFYRRF
FT                 IRSAAELQAPLYDLASKIKKRDGPLSWTDETQKVFESCRAALADTAELAHP
FT                 LPNVPLRLSTDASNTAIGAVLEQLSDKGWQPLGFYSKKLSAAEKKYSTYDR
FT                 ELLAAYSSTRHFLHAIEGRLTTLLTDHKPLTYMFTQKTEKVIDRQIRQITF
FT                 LSQYINDVKHLQGDKNIIPDALSRLEVSATQVVLPDLKKWSADQADDPELK
FT                 EILSGATKSALQLEPRSTAEGTIYLDVSTKQARMYVPSQHRRTVFDGLHGQ
FT                 AHGGGNATSRLIGTRYCWPGMNRQIKHWVKCCIQCQRTKVLKHTVSPLTPF
FT                 APPDRRFGHIHIDLVGPLPPSNGCRYLLTCVDRFTRWPEAWPIDNMSAHAV
FT                 ATTLTTQWISRFGVPDMVTTDQGRQFESELFTTLTKNLGIQHLRSSPYHPQ
FT                 ANGMVERLHRTLKTALTAHDTVNWSLRLPIVLLALRNTVKPDIGHAPAEMV
FT                 YGMSLRLPGDMFHPAPIEAKTAPELVRNLRDSMTQLQPTPGSNHATQRYIF
FT                 VPPDLNKVTHVFLRVDAVQTPLQPRYEGPYAVLERLGKNFKIQRDNGTVLV
FT                 SIDRLKPAFVLREDPTAADHTYATHAEVTKQLKKRVRFSFRPQGE"
XX
SQ   Sequence 4042 BP; 1065 A; 1224 C; 920 G; 833 T; 0 other;
     aactggtgac ctctctagta aacccttcca cgttcgttca attacgcgtt atgcaaaact        60
     ggggagatat ttgggctctc ggcgacgcga acgccaataa tccgagtgcg aacgccgaca       120
     attcgagcgc gagtgcgaat tccgaccccg cgcagacgaa cgtaaacgcc gaaaatttac       180
     cgcgtcccct tgcgcctacc gacgcttcag cagtaatgcc gtttgacata agcgcattct       240
     catccgttcg attacccgga ttttggcgac actcgccaca gcagtggttt acacacgcgg       300
     aagcgatttt ccacaaccaa cgtgttaggt ccgatctgac acgcgtaaac cacgtgctcg       360
     cggcacttga cgaagatggt gttcgcacca tcggagatct actcggcgcc gacgtgcaat       420
     attctgcagt aaaaagtcga cttatcaccg cgtacgacgt cccacaagcc acgcggttcc       480
     gttcgatcat tcaacacggg ggcatgggcg accgacgtcc ttcgcaaatg ttacgcgaca       540
     tgcgtagcgc gttaccaagc ggaatcggcg agtcgacgtt aaaagagttc tggctccaga       600
     aactcccacc aaacatcctc gccatcgtct ccggtctcga cggttcactg gagtcattgg       660
     ccgaacgtgc tgaccgagtc gcagatgcaa gcgccggtca taacttagcc gccgtgtcga       720
     atgaaaccga tcgttttcac tcaatggaaa acgcaatttc agcgctcacc gcacagattg       780
     ccgcattagt gtcgacacag ggcacacaac accgaccagc ccgcagccag gacagatcgc       840
     gatcgaaatc gcgcaaccgc tccaagtccc gcacacacaa cgacgcatgg tgtttttacc       900
     acaacgtcta cggtaccaaa gcacagaaat gccgcgaccc gtgttcgtac gagtcggaaa       960
     actgacggaa gcggcggtag tcaactcgcc tcccgccgct caccacacat acagattgtt      1020
     cgtcaccgat atccgttccg gcggacgctt tctcatcgac tcgggagccg aaatctccgt      1080
     cataccaccg ggcaacggcc cgcgccgctc atcggacatt gtcttgaacg ctgcaaacgg      1140
     cacccgaatt gcgacatacg ggccaagaga actgcacctc aacctcggcc tcgcacgtga      1200
     attcgtttgg acgttcgaga ccgcagacgt cgctcgaccg ataatcggcg cagacttttt      1260
     acatcatttt ggcctcttag tcgacgtacg acgtaagcgc ctaatcgact gcgtcaccaa      1320
     caagtgcgtc aaagctatct ccgtcgtcaa tatcgatgtg gacgctataa aggtcgtacc      1380
     cctacctcaa aagtggtcgg atattctaaa gagtttccca agtgtcacac gcgagtcacc      1440
     ggtcccagac aagttcttac atcgaatcga acacgagctt cacacgaccg gtccgccgtt      1500
     attttcgcgc ccgcgccgtt taccccccga tcgacatcgc atcgcgcgtc aggagttcga      1560
     gtacatgcgc caaaaaggca tttgtcgacc ttctgccagc gcttgggcca gcccattatt      1620
     actcgtacca aaaaaggacg gcacttttag accatgtgga gattaccgac gtttgaacga      1680
     agtaacgaga gcggaccgtt acccactacc tcacctccac gactttacca cgaatctggc      1740
     ggggaacacg gtgtttacca aactcgacct ggtccgagcg tatcaccaga tacctatcgc      1800
     caaacaggac attccgaaga cagccgtaac cacaccgttc ggtctgtttg agttcccggt      1860
     aatgtgcttc ggcttacgta atgccgcaca gaccttccaa cgtgtcatta acgacatgtt      1920
     acgcggatta aatttctcgt tcgcctacat cgacgacgta ttaatcgcgt cacgtaacca      1980
     cgaagaacat gaacaacacg tacgcacagt cctcggacgt tgccaagatt acggcatcgc      2040
     aattaacccc gtaaaatgcg ttttcgcggt cgactctctg acttttttgg gccacaacat      2100
     caacaaagac gcatgccgcc cgacgtcgga acgtatcacg gcaatccacg aatggccact      2160
     accagcgacg aaaaaaagct tgcagagatt tctgggctct gtaaattttt accgacgctt      2220
     tattcgcagc gccgcggaat tgcaagcacc tctgtatgac ctcgcctcga aaattaaaaa      2280
     acgcgacgga ccgttatcat ggactgatga gacacaaaaa gttttcgaat cttgtcgcgc      2340
     cgcgctggcc gatacggcag aactggccca cccactgcca aatgtaccac tccgcctaag      2400
     taccgacgct tctaatacag ccataggagc cgtgctcgaa caactctccg acaaaggctg      2460
     gcagccgctg ggtttttact ccaaaaaact ttcggcagct gagaaaaagt acagtacgta      2520
     cgatcgcgag ctgctcgccg catattcaag cacacgtcat ttcctacatg cgatcgaggg      2580
     acgactcacc acgctgctga cggaccacaa accactgact tatatgttta cacaaaaaac      2640
     agaaaaagtc atcgatcgcc agatcagaca aatcacgttc ctgtcacaat acataaacga      2700
     cgtcaaacat ctacaaggtg acaagaacat aattccggac gcgttatcaa ggctggaagt      2760
     ttcagctacg caagtagtct tacctgacct caaaaaatgg tctgctgatc aagccgacga      2820
     ccccgagctg aaagaaatcc tgtccggcgc taccaagagt gcacttcaac tcgaaccacg      2880
     aagcacagct gaaggtacca tttacctgga tgtttcaacg aaacaggcgc gtatgtacgt      2940
     accgtcacaa caccgccgca ccgtttttga cgggctgcac ggccaagccc acggcggtgg      3000
     caacgctact tcgcgtctta tcgggacaag atactgctgg ccaggaatga acaggcaaat      3060
     caaacattgg gtcaaatgct gcatacaatg tcagcgcact aaggtgctga agcacaccgt      3120
     atcaccctta acgcctttcg caccgccaga tcgccgtttc gggcatatac acatagattt      3180
     agttggtcct ctgccccctt ctaacggctg caggtatttg ttaacgtgtg tagatcgttt      3240
     cacccgttgg ccggaggcat ggcctattga caatatgtca gcacacgccg tcgcgacaac      3300
     tctaacgacg caatggatct cccgttttgg cgttcctgac atggtcacta ccgatcaggg      3360
     ccgccagttt gaatccgagc tgttcaccac tctcacaaaa aaccttggca tccaacacct      3420
     caggtcatcc ccatatcacc cgcaggccaa cggtatggtg gagagactac acaggaccct      3480
     caaaaccgcc ctcacggcac atgacaccgt gaattggagt ttacgacttc ccatcgtcct      3540
     gctggcactc agaaatactg tcaaaccgga cattggccac gcacccgccg agatggtata      3600
     cggtatgtca ctgcgactac ccggcgatat gttccatccc gctccgatcg aagcgaagac      3660
     tgcgccagaa ctcgttagga atctacgcga ttcgatgaca caactgcagc cgacacccgg      3720
     ttcaaaccac gctacccaaa gatacatttt cgtgccacca gacttgaaca aagtcacaca      3780
     cgtttttctc agagtcgacg cagtgcaaac gcccttacaa ccacgatatg aaggtcccta      3840
     tgcagtacta gaacgactcg gcaagaactt caaaatacaa cgcgacaacg gcacagtctt      3900
     ggtgtccatc gaccgtctca aacccgcgtt cgtgctcaga gaggatccca cagccgcaga      3960
     tcacacgtac gcgacacacg cagaagtcac caagcagctc aaaaaacgag tacgtttttc      4020
     ttttcgccct cagggggagt ag                                               4042
//
ID   Gypsy9-I_Dpse repbase;    DNA;    INV; 4981 BP.
XX
AC   Unknown_group_264;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9_Dpse;
KW   Gypsy9-LTR_Dpse; Gypsy9-I_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4981
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1072-1072 (2009).
XX
DR   Genome; Unknown_group_264; Positions   12625   17605.
XX
CC   Positions [3771-4247] - Integrase core
CC   'ATTG' target site duplication
CC   LTRs are 93% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2661..3665,3669..4607)
FT                 /product="Gypsy9-I_Dpse_2p"
FT                 /translation="MAHVCRLSAANRAFYPGRVPATQDQLHTRATPKCPLH
FT                 HDPRPEKRVLADTNGPRQPGSHGIHDTRPRIIPMESSAFRFTLRGSHVSTD
FT                 PRRRYRRRHGTIRVRISRRHRHRREKLPGTPEQRKRSFRTTAKGKPTGRLQ
FT                 PWSRRGPHPRDPIAYASRRLNKAEENYSATDKECLAVIWAIRKLRCYLEGY
FT                 RFDVITDHLESPYGRVARWALELQQYQYDVHYRAGNQNVVADALSRQPLET
FT                 LSRIEEEDNTACTWLKQRIQQVQDEPQKYPDYTHENGQLYRYLGHGADDDD
FT                 HIPWKLCVPKNGRTRVLRECHDEPTAGHLGVRKTILRTTQPYYPGLHRDVR
FT                 RYVQGCVSCQKFKATQRKAVGRMLTRKPEEPFATLCADFVGPLPRSKHGNT
FT                 ILLVFFDNFSKSVELVPLKKPTTANLERAFRERILSSFGVPKLFVCDNGIQ
FT                 FTSRSFRTFMRSAGVELQHTAPYWPQENPTERANRTVKTMITQFVDDHQNT
FT                 WDELLPEMTLAINSSVSETTGFSPAFLLQGREPRLPAAVYDEVTPGTGSTP
FT                 ETATSKATRLKEEFAIVRNNIQRASQEQGRHYNIRRRLWRPAVGSLVLLRQ
FT                 HHLSNAAEGFAAKLAPKIDGAYRVKSFPSPNIANYNIAKAGNTKPQISTT"
XX
SQ   Sequence 4981 BP; 1438 A; 1620 C; 1233 G; 690 T; 0 other;
     gtggcgctcg agcagggacc caaaggaacg tcagcgaggg tttgaagaag accacaagag        60
     aacaacccaa agaaaacccc gacctcgcgc aatatcaacg gcaagagttg cgcaacgagc       120
     agacgaaagc gcgacacagc gacagagaaa cgcgaacagt gaagtcaccc cgagaagaaa       180
     ttcgaagcgt cagccgcgaa ggaaaatcgc aagcccatcg aaacagccaa ctcgagcaac       240
     aatcggagcg atggaatccc atacagaaga acagcccagt gggtattacc ctggagaatt       300
     cgtcgccgag acgagctgga gtccttcgcg gaggaattcg gattcagccg agagggtaac       360
     gtggaagatt tgcggagaaa tttcgccgaa ctagtcgccg ggccccgcca gtacgagcca       420
     gatcgcccca gcccgacatc tcagcactac cagagaagca gaagacggac gccaaactca       480
     gcctacaagt tctaggagtc atggagggca aagcaagcac ctcactgaca tcgataaccg       540
     tcgaagatct accgaagccc ctgcccccgg agccaaggcc ttcgcccatg agaaggatct       600
     tgcaggaata gcaggaaggg atggcccctt agacggtcat tactacagtc acgccgcaca       660
     gatggcggaa cggatccgaa agtggctcct caccgaccga gccaaccgtt ggttctgcac       720
     cagccgactc cagagcgcct catgggccga tttccgccag gaattcctag cctttttcct       780
     gcctccccgg tacttcgagc aattggaaga ccagatcagg gaccgcaaac aagcggtggg       840
     cgaaccattc aaggacttcg tcatcgagct ccggttgctc atgcaccacg ccgggtacga       900
     cgaagccaag gaacttagcc ggatctatga caacaccctc ccggcgtacc agctgtacgt       960
     gcgaagacac gaactgagaa gtctgacgca attaacaata ttggccacag agttcgagag      1020
     tatccaggaa cgaaacgtac cagcgaccct catccgccct cgacaacccc ccaggtacac      1080
     gcggccaacg gcacaacaaa acgaaagcgg gacgaatcgg gcccaatccc gaaagcctca      1140
     ctggaacacc tcggaacctg caaggaagcc gcaccaggcc agcacaggaa acggcacatc      1200
     gaatgatcac cacccccatc gccaacccgc acgcagcctg tcgacgctgc ggagaagctc      1260
     cggagaagcc ccctcttctg gtgggaatgt ggcagaagcg tcatcaacgc cgacctcgcc      1320
     cgcaaactcg acctacgagc cgcatgcgtc ccgatacgcc tagctgacgg ctcagctcgc      1380
     gaggtaactc agatcttgtt agcgcgtcaa actagacgaa ccagaagtac agatgccact      1440
     cctggtacta cccaatatgg tagacacaag ccatcatagg gatggatttc ctgtgcgcca      1500
     ttgaaaccac aatacaatcg ccacacgcct ccatctccaa ggctctcgac gccccacccc      1560
     aaacatgccg atgatcaccg ccgaagtaca cgccccggac ccacgaactc gccacgacac      1620
     gagagaagag cacaaggaac aaggaacaca gaacccttgg ccacgacgag gcacaccagc      1680
     cccaagccca ctccgagaaa cccaaaacta agcagagcca cgaagaaagc gagccggtct      1740
     cgcgagggca ctgacgcggt tctaccaacg aaggaaaagg aacccaggac gcacctctag      1800
     aagataaccc ggccccagca acgacggccg ccacgcaaca cccaggctct cgaggtacca      1860
     cctccgatcg ccaccatggc ccacgaacgc gtcgacaccg ccctcgacgc gaaaacgacc      1920
     cctacgacac cgaccgaccg ctactcccgc gtcctctcag gcaggaaccg ggaaaggcga      1980
     tcactgccac acgaggcacc catcggaacc ccgacgcacc tggagccgac gcaccatcga      2040
     tcgtcccaga gatcatggaa cgcctcccga gcaacacctc gtacggcgcc ggcatgcggc      2100
     ccagcaccac gcctggagcc atgtcgttga acgtcatcgc ccaaactagc cgttggtcaa      2160
     acgctacgat cgccatcgag acccgcacgt tcgtacatca cgctgggtac aacgtcgcgc      2220
     tagcaccccc caggacacac acgagccccc tactcatgat cgaggcaccc gccgtcgtca      2280
     aaccaccaag cgcattcgac acaacgatcc tccccgagag ccccgaccac acttgccacc      2340
     caggaatcga cgacccacct taggacggtt cggaacgaat ctccgaccca tggccttccg      2400
     acatcgcgcc gaaaatacag gaatttctag acgaggaact gccaacactc gcgggcctcc      2460
     gagggacgac gggcctaacg gaatacacca tcgtcatgag ggacaaccga cccataaaac      2520
     agcggtacta cccgaaaaaa tccagccatg cggcggatca tcgatgaaca ggtcgaccaa      2580
     ctgatagctg aggacctaat cgaaccatcc cggagccccc acagcgcgcc aatcgtcctg      2640
     gtctgcaaaa agaacaggag atggcgcatg tgtgtagatt atcggcagct aatcgagcgt      2700
     tctatcccgg acgcgtaccc gctacccagg atcaactaca tactagagcg actccgaaat      2760
     gcccacttca tcacgaccct agacctgaaa aacgggtatt ggcagatacc aatggcccgc      2820
     gacagccggg aagccacggc attcacgata cccggccgag gattatacca atggaaagta      2880
     gtgcctttcg gtttacactc cgcgggagcc acgtttcaac ggaccctcga cgacgttatc      2940
     ggcgcagaca tggaaccatt cgtgttcgca tatctcgacg acatcgtcat cgtcgggaaa      3000
     agcttccagg aacacctgaa caacgtaaaa gaagttttcg cacgactgcg aaaggcaaac      3060
     ctacgggtcg actgcaacct tggagtaggc gcggtcctca cccaagagat ccaatcgcat      3120
     acgccagtcg acgcctcaac aaggcagaag aaaattactc ggccaccgac aaggaatgcc      3180
     tcgccgtcat ctgggcgatc cgaaaactgc gatgctatct cgaaggctac cgattcgacg      3240
     tcataaccga tcatctcgag agcccttacg gtagagtagc aagatgggcg ctcgaactac      3300
     agcaatacca atacgacgtg cactatcggg ccggcaacca gaacgtagtc gctgacgcgc      3360
     tgtcaagaca accattggag accctctccc gcatcgagga ggaagacaac acagcatgca      3420
     cctggcttaa acaaaggatc cagcaagtcc aagacgaacc ccagaaatac ccggactata      3480
     cgcacgaaaa cgggcagcta taccgctatc taggacacgg agccgacgac gacgaccaca      3540
     taccgtggaa actatgcgtg cctaaaaacg gccgaacgag agtactccgc gaatgccatg      3600
     acgaaccaac agctggacac ctcggcgtcc ggaaaaccat cctgaggaca acacaaccat      3660
     actactaacc aggactacac agagacgtgc gacggtacgt gcagggctgc gtaagctgtc      3720
     agaaattcaa agccacgcag cgcaaggccg tgggcaggat gctcacacgt aaacccgaag      3780
     aacccttcgc caccctgtgt gccgatttcg tcggaccatt accacggtcc aagcacggga      3840
     acaccatctt actggtattc ttcgacaatt tttccaagtc ggtcgaactg gtacccctca      3900
     agaaaccgac aacagcaaac ctcgaacgag ccttcagaga acgaatactg agcagcttcg      3960
     gcgtgccgaa actattcgtc tgcgacaacg gaatccagtt caccagccga tcgttcagga      4020
     cattcatgcg aagcgcaggc gtggagctgc aacacacagc cccgtattgg ccccaagaaa      4080
     acccgacgga gagagccaat cggactgtga aaacgatgat cacccagttc gtcgacgacc      4140
     accagaatac atgggacgag ctcctacccg agatgacatt ggcgatcaac tccagcgtct      4200
     ccgagacgac cggattcagc cccgccttcc tcctgcaagg aagagagccc cgactccccg      4260
     ccgccgtcta cgacgaagtc acgcccggga cagggagtac gccagagaca gccaccagca      4320
     aagcgacgag gctgaaagaa gaattcgcca tcgtccggaa taacatacag cgagccagtc      4380
     aagagcaagg gagacattac aacatccgcc ggcgactatg gcgccccgcc gtcggatcac      4440
     tagtactact acgccaacac cacctctcaa acgccgccga gggctttgcg gcaaagttag      4500
     ccccgaagat cgacggcgcc taccgggtca agagttttcc atcgccaaac atcgccaatt      4560
     acaacattgc gaaagccgga aacacaaaac cgcaaatatc aacgacctga gagagttcca      4620
     cgaccacgag tccgaagaat ccactgatct acctgagaat gctgacatcg acgaggaaag      4680
     caacgagaca ttaacccgac gccccaacca cggcaccaca gagtcagcaa atcccgggat      4740
     acccgaccaa aagacagcaa cggcaaaaag cgagcccgat ggcataatac caccgaaaat      4800
     gcaagcgcag cgaaccgcgc gaccccactt aatcgaacag cgctgacgcc acgaccgcgc      4860
     gccccacaaa tccgttgacg aggcgaagaa aacgcggaaa ccccaacgca gaccacagaa      4920
     gaaaccacac gagcccggcc cactagtcct cgtaactctc gccggggaag aaaggggagg      4980
     g                                                                      4981
//
ID   Gypsy9-I_Dya repbase;    DNA;    INV; 4457 BP.
XX
AC   chr2R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9_Dya;
KW   Gypsy9-LTR_Dya; Gypsy9-I_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4457
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1073-1073 (2009).
XX
DR   Genome; chr2R; Positions 1397572 1402028.
XX
CC   Positions [1516-1941] - Reverse transcriptase
CC   Positions [3142-3615] - Integrase core
CC   'TATA' target site duplication
CC   LTRs are 99% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..4086
FT                 /product="Gypsy9-I_Dya_1p"
FT                 /translation="MFLNMLTKRPTDGECLATHASRMVTELTTKWREMETE
FT                 EIAVSVTLALLASFDNRLQRLTFTSNVQSRGDLQSELKAFTFNKRKSGFVE
FT                 QQTEAHPKRQKPLSMECHFCGKFGHKMFECRLRKQQQHASNNERHDRYDEH
FT                 QRGKPNVTCYKCGERGHISTQCTQKESDKKTFIREKRVEQCSVAVPKGYMN
FT                 HKGKIFEVTFDSGAECSLMKEKISTTFSGKRLNNIVMLKGIGSNGICSTVQ
FT                 ILSNVKIDENCIEILFYVIGDDHMQNDIVIGREILNQGFDIALSSKEFKII
FT                 RSKIINLCTGSEPADIDTELEGQDKIKLNSLLSKYSNCFIKGIPCTKVKVG
FT                 EIKIRLIDPRKTIQRRPYRLSPCERDLVREKINELLKCNIIRPSCSPYASP
FT                 ILLVKKKNGSDRLCVDYRELNSNTIADKYPLPLIQDQINRLRGVKYFTCLD
FT                 MASGYYQIPLNSESIEYTAFVTPDGQYEFLSMPFGLKNAPSVFQRLVMQAL
FT                 GDLANSYVIVYMDDIMITAANQCEALERLEIVLNILTDAGFSFNITKCSFL
FT                 KTSVQYLGFCVSAGEIRPNPQKIVALTALPPPQSVTSLRQFIGLASYFRQF
FT                 IKGFSQLMKPLYFLTSKKNKFIWKTEHEEIRRTVIFTLTDKPVLVIFDPNY
FT                 PIELHTDASCSGYGAILLHKIDNKPQVIEYYSKTTSPAESRYHSYELETLA
FT                 VVNAIKHFRHYLLGRNFTVFTDCNSLKASRNKQDLTPRAQRWWAYLQSFTF
FT                 DIQYREGKRMAHVDFLSRNPISTKPTSAAKVTEEKRVNLAEISSNWLIAEQ
FT                 RRDSDIAEIVNRLKEFSLAEDIAKTYELRAEVLYRKIQRNGRTRCLPVVPR
FT                 AFRWSVINQVHESIMHLGFEKTLDKVYDFYWFDNMSKYIRKFVDNCITCKM
FT                 SKSTSGKIQAELHPIPKINIPWHTIHIDITGKLSGKSDQKEYIIVQVDAFT
FT                 KYVYLYHTLKLDSENCINAVKSSVSLFGVPNRIIADQGRCFTGAKFSQFCS
FT                 DHKINLHLIATGASRANGQVERTMSTLKNMLTAAETGTQSWQDVLGDVQLA
FT                 INCTTNRVTRASPLEMLLGRVARPLGLLPPSDLENDVDLKNVREQAEKNVL
FT                 ATAVYDKERFDKNKAKILRHQVGDFVLLKSEERHQTKLSPKFKGPFEITQV
FT                 LEGDRYILKSLTNKRKYKYAHEDLRKLPEGEVPEELNVFDDYNNNFESKNE
FT                 NNVEDESEKENIENVEVNKECEAYQ"
XX
SQ   Sequence 4457 BP; 1568 A; 743 C; 923 G; 1223 T; 0 other;
     tcagaagtgg gatctggccc tctaccttca tcagtagatg gaccatggcg tgccatattg        60
     gaactacaaa ataaaaactt aattgaacta gtgcgggcca tacaaacaac gacccctgac       120
     tcagtgcaaa gtaaatcggt tcaacttccc aaatataacc cagataagac tggcgccatc       180
     gcttcatcat ggtgtactac agttgaaatt attttgaaag aaaatccatt aaaaggcagt       240
     gcgttggtag tggccttaag ttctgcattg gagggtagtg cttcgcaatg gctatcccaa       300
     gtgtgttacg ccgatataac ctggctcgaa ttcaaggaaa tatttataca acgctttgac       360
     acaaaggaaa caccagccgc aatgttttta aatatgctga caaagcgacc gactgatggc       420
     gaatgtctcg caactcatgc aagccgtatg gtcacagaac ttacaacgaa gtggcgtgaa       480
     atggaaacag aagaaatcgc tgtatctgtg actcttgcat tgctggcaag ctttgataac       540
     cgactgcagc gtttaacttt cacatcgaat gttcaatcca gaggggattt acagtccgaa       600
     ttaaaagcgt tcacttttaa taaaaggaaa agcggttttg tggagcaaca aactgaggct       660
     catccgaaac gacaaaagcc attatcgatg gagtgtcatt tttgcggaaa atttggacat       720
     aagatgtttg aatgcagact ccggaaacaa caacagcatg caagtaataa tgaacgacat       780
     gaccgatacg atgaacatca acgtggaaaa ccaaatgtaa cgtgctacaa gtgcggagag       840
     cgcggacaca tatctaccca atgtacgcag aaggagtctg ataagaagac attcatccgg       900
     gaaaagcgag tggagcagtg cagcgttgca gtacctaagg gatatatgaa ccataaaggc       960
     aaaatttttg aagtcacctt tgattccgga gcagaatgtt cactgatgaa agaaaagata      1020
     agtaccacat tttctggtaa aagattgaat aatattgtta tgttaaaagg cataggcagt      1080
     aatgggatat gtagtacggt acaaattcta agtaacgtta aaattgacga aaactgtatc      1140
     gagattttgt tttatgtaat tggggatgat cacatgcaaa acgatattgt cattggtcgc      1200
     gaaatattaa atcagggttt tgatattgca ctttcttcaa aagaatttaa aattataaga      1260
     tcaaaaataa ttaatttatg tactggtagc gagcctgccg atattgatac cgagcttgaa      1320
     ggacaagata aaataaaact taattcatta ttgtcaaagt actctaattg ttttataaaa      1380
     ggtattccat gcactaaagt taaagttggc gaaataaaaa ttaggttaat cgatccaaga      1440
     aaaactattc aaagaaggcc ctatagatta agtccatgcg agcgagattt agtccgagaa      1500
     aaaattaatg agctgttgaa atgcaatata ataagaccaa gctgctcacc ttatgcaagc      1560
     cctatattgt tagtaaaaaa aaagaacggt tctgatagac tttgtgttga ctatagagag      1620
     ttaaattcaa acacaatcgc tgataagtac ccgttaccac ttatacagga ccaaataaat      1680
     agacttcggg gagttaaata tttcacatgc ttagatatgg ccagcggata ctatcaaatt      1740
     ccattaaatt ctgaatccat tgagtataca gcgtttgtga cgccagatgg ccaatatgag      1800
     tttttgtcga tgccattcgg gcttaaaaat gcgccctctg tttttcaacg cttagtaatg      1860
     caggctctcg gtgatctagc caactcttat gtcattgtct atatggatga cattatgata      1920
     actgctgcaa atcaatgtga ggctttagaa aggttagaga ttgttttaaa tattttgaca      1980
     gatgctgggt tttcattcaa cataacaaag tgctctttct taaaaacatc ggttcaatat      2040
     ttaggtttct gtgttagtgc tggggaaatt cgtccaaacc ctcagaaaat tgtagcattg      2100
     actgctcttc cgcctccaca gtcagttacg tcacttaggc aatttattgg attggcatcc      2160
     tatttccgac aatttataaa gggattttcg cagttgatga aaccgttata tttcttaact      2220
     tcaaagaaaa ataaatttat ttggaaaaca gaacatgaag aaatacggag gactgttatt      2280
     tttactctta ctgataaacc agtccttgtt atttttgacc ccaactatcc aattgagctg      2340
     catacagatg caagttgcag tggatatggt gcaatcttat tgcacaaaat tgataacaaa      2400
     ccccaagtaa tagaatacta tagtaaaact acttcacctg cagagtcgag ataccactca      2460
     tatgagctgg aaaccttagc agtagtaaac gctattaaac attttcgaca ttatttgttg      2520
     ggtaggaact ttactgtttt taccgactgt aactcactaa aggcctcaag aaataaacaa      2580
     gatttgaccc ctagagcgca gcgctggtgg gcttatttac agtcatttac attcgatatt      2640
     caatacagag aaggaaaaag aatggcccat gttgattttt tgtcgagaaa tcccatatct      2700
     acaaagccaa cttctgccgc taaggttact gaagagaaga gagttaattt ggccgaaatt      2760
     tctagcaatt ggctcattgc tgaacagcgg cgagactctg acatagcgga aattgtgaat      2820
     agattaaaag agttttctct tgctgaagat atcgcaaaaa cctatgaact aagggcagaa      2880
     gttctttatc ggaaaataca gagaaatggc agaacacgtt gtttaccagt agtgccacgt      2940
     gcgttcagat ggtctgtcat aaaccaagtt cacgagtcaa taatgcattt aggctttgaa      3000
     aagacacttg ataaagttta cgatttttat tggttcgata atatgtcaaa atacatccga      3060
     aaattcgttg acaattgcat cacttgtaaa atgtccaaat ccacctcagg aaaaattcag      3120
     gctgaactgc atccaatccc gaaaattaat attccttggc acaccatcca catcgacata      3180
     acagggaaat taagtggcaa gagtgaccag aaggagtaca ttattgttca ggtagacgcg      3240
     tttactaagt atgtctatct atatcatacc cttaagttgg acagtgagaa ttgtataaac      3300
     gctgttaaat cctctgtttc attgtttgga gtaccaaacc gaataatagc tgaccaggga      3360
     aggtgtttta ccggagcgaa gtttagtcaa ttctgttctg atcacaaaat aaacttgcac      3420
     ttgattgcca ccggtgctag tcgggctaac ggtcaagtgg aacggacaat gagcacgttg      3480
     aaaaatatgt taacggcggc agagacagga acgcagtctt ggcaggatgt gctaggagat      3540
     gtacagttag caattaattg tacaactaac cgtgtaacaa gggctagtcc tttagaaatg      3600
     ttattgggaa gggtagctcg gcctttaggc ctacttccac ctagtgatct agaaaatgat      3660
     gttgatctga aaaacgtaag ggaacaggct gaaaaaaatg ttttagccac tgcagtttac      3720
     gacaaagaac gattcgataa aaacaaggca aaaatactta gacaccaagt aggagatttt      3780
     gtattactta aaagcgaaga aaggcatcaa accaaactaa gcccaaagtt taaagggccg      3840
     tttgaaatta cacaagtttt agagggcgac agatacatct taaaatcctt aaccaataaa      3900
     agaaaataca aatatgcgca tgaagattta cggaaattgc cagaagggga agtacctgag      3960
     gagttgaatg tgtttgatga ttataataat aatttcgaaa gtaaaaatga aaataatgtt      4020
     gaagatgaaa gcgaaaaaga aaatattgag aatgttgaag taaataaaga atgtgaagca      4080
     taccaataag ggtgatgaaa tgaagagtat tagaagcaat ataatgcaag cacaagtgca      4140
     aaacttacta gagtctgttt tgatcatggc gtgtggggca ttttattgag ttattctaac      4200
     gttgaataaa gaatgttgaa taaagaatgt tgaagaaggt aaaatgatga aataaaagaa      4260
     aaataagaaa gagaatggta aagattatgt ttaaatatga aggtttgtca ctataatgtt      4320
     aaaggataac taattaagga aataaagttt attgtgctat gaaaaaaaaa aaataaataa      4380
     ataaaaaaat aaatgaataa gagtaacttg aattatggaa ctttatacac gaggtcgtgt      4440
     tagagtcagg atggccg                                                     4457
//
ID   GYPSY9-LTR_AG repbase;    DNA;    INV; 751 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY9-LTR_AG is an LTR of retrotransposon GYPSY9_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   4-bp TSD GYPSY9_AG; GYPSY9-I_AG; GYPSY9-LTR_AG; Gypsy clade;
KW   mdg1 lineage.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-751
RA   Tubio M.J., Costas C.J. and Naveira F.H.;
RT   "GYPSY9_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 3(9), 178-178 (2003).
XX
DR   [1] (Consensus)
XX
CC   GYPSY9-LTR is a long terminal repeat of GYPSY9_AG
CC   (its internal portion is deposited as GYPSY9-I_AG).
XX
SQ   Sequence 751 BP; 269 A; 189 C; 118 G; 175 T; 0 other;
     tgtagcatat ctgctataca caacttatta taatacacac tatcagctat agacacattg        60
     taacacactt tggaaagcca aaccacacca ttgtaacaca ttcattataa cacattcagt       120
     aaatcagatc ataccataca cacccggaag agctcaggcc acaccgttca tataaaaaca       180
     attgtgacac acttaacaga accaaccgaa acgtacaaca taagcaggaa cagtttatgc       240
     attacaaccc aaagcaggaa cagtataagc attaaaccca aaacaggaac ttagtgacaa       300
     gaaccatcgt tcttgtcaac aaaagacaaa cgtaactagc tgagtgaaaa caataacttt       360
     ccaacataca acccggaacc aaatgtgaga aacccttaac ttcttttgag tataaataaa       420
     accaactccg atcatggcaa gtcagattcg ttcggactgt caggatagga ctatgcccat       480
     cctacatcta tcgacttctc atttaaagag tttagttatg tccccctacc caaggtaagg       540
     cctctaaact ccaacgtttc cagtaaggga aacctcctaa aggtttctat gatcgcctgg       600
     acgatcaagt gtcgaaaagt ccgctcgaac gaagttttaa tccacctcgg ctcatgtcag       660
     taaaaactga cctaccgcga cggtactcga agtacagttg tacgatcatc gcattacatg       720
     gcgaccgtag ctatcatccg aatacattac a                                      751
//
ID   Gypsy9-LTR_AP repbase;    DNA;    INV; 385 BP.
XX
AC   Contig13293;
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 0)
XX
DE   LTR retrotransposon from pea aphid: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9AP;
KW   Gypsy9-I_AP; Gypsy9-LTR_AP.
XX
NM   Gypsy9-LTR_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-385
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from pea aphid.";
RL   Repbase Reports 8(4), 454-454 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 385 BP; 91 A; 101 C; 63 G; 130 T; 0 other;
     tgtggcgacc cacaacaatg attattttgt aaccgcggta tcagcgcgtc agccgccgcc        60
     agctgcgcgc ccctccctta attttgtata ctgcgcgtta cctaccgcct ccatagcgtg       120
     accgactagc gctcactttt ttcggacgta cgtcgtcaac cgcttatacg ctccgtcgac       180
     cgtcgttcgt aatcccattt taattgttct cgtaaaccac gtttttatgt tcctcgcgtc       240
     caacgcctaa aatgtactat aatatttatt tctattgact gaattatttt tatttaatta       300
     aactgaaacg ttatatttta acacattatt ttttatttat ttaaattggt aacccgagta       360
     gtcggctaaa cgccgcatct tacca                                             385
//
ID   Gypsy9-LTR_Dpse repbase;    DNA;    INV; 762 BP.
XX
AC   Unknown_group_264;
XX
DT   14-MAY-2009 (Rel. 14.05, Created)
DT   14-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9_Dpse;
KW   Gypsy9-I_Dpse; Gypsy9-LTR_Dpse.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-762
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1074-1074 (2009).
XX
DR   Genome; Unknown_group_264; Positions   11863   12624.
XX
SQ   Sequence 762 BP; 228 A; 242 C; 151 G; 141 T; 0 other;
     tgtaaagaac cttaaaggtt tcgatacaat ccgtcccccg acttataatg agcgcatcgc        60
     accacacccc acaaccaacg ccccgtctcc gcacgcaacc accgatcaac acgcgtcaac       120
     tccataacgc tgaccaaaga catcagatca cgcggacttt ccccactcca ggccaagcca       180
     tcggccaatt gcggtcttcc gggtcttcat caactgcgga aagatgacgc cgcgaaaatc       240
     tgcgacgatc accaagaacg gaaaagtgca ctccgacgcg gaagtgcatt ttcaaacctg       300
     cagacccagc aatacgggcc tataaaaaga cgacgacgag aaccaagaag caacttacgc       360
     agaaacccgg ctcagagtac agacgttgta ccaaaactta cgcagaaaac ctggttcgga       420
     gtacagacgt tgtacccggg acttacaaga aacaccggcg atcaattaaa ctaagttcat       480
     ttaaagtgct aagaattata ataaagtgtc gaatcatcaa agtaacaccc gattgcgtaa       540
     gttcactcca actagccgag gcaccgacac taccccaccc cgagtccacg cacgccgttt       600
     cgtatgcacg acgagcgacg ttcactccag ccccgatcca cctctctacg ataggccgcc       660
     ccccgacgcc gcccttaagg ttccatccat ttctacaaat ttcttgtgga ttgacccctg       720
     gacgtgactg agcttacctc agcctgaaat aggtacatca ca                          762
//
ID   Gypsy9-LTR_Dya repbase;    DNA;    INV; 352 BP.
XX
AC   chr2R;
XX
DT   18-MAY-2009 (Rel. 14.05, Created)
DT   18-MAY-2009 (Rel. 14.05, Last updated, Version -1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9_Dya;
KW   Gypsy9-I_Dya; Gypsy9-LTR_Dya.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-352
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 9(5), 1075-1075 (2009).
XX
DR   Genome; chr2R; Positions 1397220 1397571.
XX
SQ   Sequence 352 BP; 82 A; 71 C; 96 G; 103 T; 0 other;
     tgtcggagaa tggaatattc tagatcggaa tttcgtagta tttgaatttg ctcgtctctc        60
     tgttccttcg tttgagcgtc ggacaacttc taatttcgta gtatttgaat ttgctcgtct       120
     ctctgttcct tcgtttcgag gaaccgttgg agcaaggcga cggtggcgcg tcgcctgtgt       180
     agcggtgcaa gagttaccac aaatgtggcg cgacatcgtc gtcgagtgcg gttcaaggaa       240
     tcatataaaa agaggtagta gtttgagggc gatgagttag tcttgatcga tcgtcgctac       300
     cgtaaagaac gaaacgcaca gtgccccgat ggatcctgaa cgtaatttga ca               352
//
ID   Gypsy9-NVi_I repbase;    DNA;    INV; 4135 BP.
XX
AC   AAZX01007771;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: internal
DE   portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9-NV;
KW   Gypsy9-NVi_LTR; internal portion; Gypsy9-NVi_I.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4135
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1141-1141 (2007).
XX
DR   Genome; AAZX01007771; Positions   13889   18023.
XX
CC   Positions [3108-3566] - Integrase core
CC   'ATCTT' target site duplication
CC   LTRs are 95% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..1075
FT                 /product="Gypsy9-NV_I_1p"
FT                 /translation="MSTKEEIERLTAELNKQKKEVDQKIAELQALDKKVKE
FT                 DNKKLEATRQLVELGNSSARHTTLVRGTIGSITEFSMDEDWQMWYERLEQY
FT                 CVTNEVPAEKHVSLFLTLLGKDGYTLLRNLCTPRIPSQMLIIELAKIMKDH
FT                 LQPAPSVITERYKFKECRQRTGEDIKGYVANLKKMSTFCEFGSNLESHLRD
FT                 QFVWGVASEAIKKRLLGETDLTYHRAIELAASLESAGRDAAEMGTTASVAA
FT                 DAVNYVADKKVTPGKQTRATGGDSRNCYCCGRPNDRASDCTFRNYKCNSCG
FT                 KTGHLTIVECVEIEILRKRVCGIRLSLTKIKRVIQRDRTKNRIT"
FT   CDS           join(1203..2063,2067..2996)
FT                 /product="Gypsy9-NV_I_2p"
FT                 /translation="MMIEGAMMEFEVDTGSPITAISSRVYKNAKNLSKLKL
FT                 EKTSRVFKTYHDKKICPLGTVQVKVIYKKKSLVLELFVLPSDSDTPIVGRQ
FT                 WLRHLGMIQVNGDKEGVNVLTIHTLCGISMSDLLREFDSVFSGKLGTYRGG
FT                 KLSLPLKPNAVPVFYKPRPVPFAIRKPLDKELERLIRENIIEPSNSSDWAT
FT                 PIVPVIKSNGEILFQKEMEKLLDSVKGTAVYFNDVFISGKSQAEHDSNLRK
FT                 VLNRFKEAGLTVKLEKCQYSEQKIQFLGYELDSKGLHVSESKIKAIKMEAP
FT                 TKVAELKSFLGAMQCYAKFIKDFAKVVSPLYELTREDVKWDWTKEREAAFQ
FT                 TTKKCLMSHDVLVHYSTEVPIKVTCDASPKSIGAVLSHIFPNGDEKPVAFA
FT                 SRVLTRAERNYSQLDREALAIVFGVKSFHRYIYGRDFTLETDHKALSFIFG
FT                 SKKGILQIAASRVQRWAIFLSGYNFRIKYINGKDNGPADALSRVLVDEFKA
FT                 KHKESEEYTYLNYLSDDIQSINVDTVRVETARDPILTKVYEFVSNGWPKKV
FT                 DDNLQAFKNREFELSIENGCIMWGHMLVIPYVLRFNYFQKLHSAHAGIIK"
FT   CDS           3168..4109
FT                 /product="Gypsy9-NV_I_4p"
FT                 /translation="MYLIIIDAHSKLIDIKEMSDITAKNTIGAFKEYFSVW
FT                 GLPNALVTDNGPTFTSEAFKDFLDKNNVKHHRTALYHPASNGAAENAVRSF
FT                 KNKFKKLCKDKLSRQDALLRYLLYYCSTPHSTTGVCPAELQIGKKLRTRLS
FT                 AISSVACKNVKRSQERQCRNFKGNRNIEFKKNDVVMAKDYAVDKWRVAEVV
FT                 DKLGPVTYSVSTNDTRTWKRHTDQLRSYENPMYAQSNVSTDNVNSGFLIPN
FT                 SFCKEPSIISNSNFVKHQSFGIAKEATASQSEPMSTETVNINEQPNATIAS
FT                 TGLSQNVRRSTRNRRAPERLNL"
XX
SQ   Sequence 4135 BP; 1384 A; 742 C; 980 G; 1029 T; 0 other;
     ttggcgacga ggattaagtt cgtaaacacg tgagacacag taataggaat cacggatacc        60
     tatcaagatg tccacaaaag aagagattga acgtttgaca gcagagctga acaaacaaaa       120
     gaaggaggta gaccaaaaga tagctgaact gcaggcatta gacaaaaagg taaaagaaga       180
     taacaaaaag cttgaagcga caagacagct tgttgagcta ggtaatagca gtgcaagaca       240
     cacgacgttg gtgcgaggca caataggcag catcacggaa ttctcgatgg atgaagattg       300
     gcaaatgtgg tacgagcgct tagaacagta ctgtgtaaca aacgaggtac cggcggagaa       360
     gcatgtgtct ttgtttctca cgcttcttgg aaaggacggg tacacattgc tgcggaactt       420
     gtgtacgccg aggataccgt cgcaaatgtt aataatcgaa ctagccaaga taatgaaaga       480
     ccacctgcaa ccagcaccga gtgtaataac ggaacgctat aaattcaagg aatgtaggca       540
     gcgaacgggt gaagacatca aaggatatgt ggctaactta aagaagatgt cgacattctg       600
     cgaatttggc agcaacttgg agagtcacct tcgcgaccag ttcgtttggg gagtggcaag       660
     cgaggcgatc aagaagaggc tactgggcga aacagacttg acctatcatc gggcaatcga       720
     gttagcagca tcattggagt cagcaggtcg ggacgcagca gagatgggga cgacagcgtc       780
     ggtggcggca gacgctgtca actacgtagc cgataagaag gttacgccag gtaaacaaac       840
     gcgcgcgacc ggtggcgatt cgcggaattg ttattgttgc ggtagaccga atgaccgagc       900
     atcggactgt acttttagga attacaaatg taacagttgc ggaaaaacgg gtcatcttac       960
     aatagtagag tgtgtagaaa tagagatact caggaagcgg gtttgcggaa ttcgactaag      1020
     tttgacaaaa ataaaaagag taattcaacg ggatcggacg aaaaacagaa ttacgtagaa      1080
     gaagtagagt cgttgggtaa aatgttgatt attaccgatg atatattttt gatatatttt      1140
     ttgtattaga ggaaatcaac gcaattcgcg aacatgacga cgctaaacca ttgtgtgtgc      1200
     aaatgatgat tgagggggcc atgatggaat ttgaagttga cacgggctca ccgattacag      1260
     ccatttcgtc gcgagtttat aaaaatgcga agaatttatc aaagctcaaa cttgagaaaa      1320
     cgtcacgtgt tttcaaaaca taccatgata aaaaaatttg tccattagga actgtacagg      1380
     ttaaagtaat ttataagaaa aaaagcttag ttttagaact ctttgtgtta cctagcgata      1440
     gtgatacacc gattgtagga cgtcaatggc tacgtcacct aggtatgatt caggtaaacg      1500
     gggataaaga aggggttaat gtactcacta tccacacgtt atgcggcatc agtatgtcag      1560
     acttgttaag ggagtttgat tccgtgttct cgggcaaact tggtacttat agaggcggca      1620
     aattgtcgtt acccttaaag cccaatgcag tgccagtttt ctacaagcct agaccagtgc      1680
     cgttcgctat acgcaaaccg ttagataagg agttagaaag attaattcgc gagaacatta      1740
     ttgaaccaag caatagttca gactgggcaa ctcctattgt cccagtaatt aagtcaaatg      1800
     gagagatttt atttcaaaaa gaaatggaaa aactactaga tagcgttaaa ggtacagcgg      1860
     tatattttaa tgatgttttt atatcgggaa aatcgcaagc agagcatgac agtaacttac      1920
     gcaaagtatt aaatcgtttt aaagaagccg gactaacagt gaaattagaa aagtgtcagt      1980
     atagtgagca gaaaatacag tttttaggct acgaattaga ttcaaaaggg ttacatgtgt      2040
     ctgaaagtaa aatcaaggca atttaaaaaa tggaggcacc tacaaaagta gcggaattaa      2100
     agtcgttttt aggagcaatg cagtgctacg cgaaattcat taaggatttt gcaaaagtag      2160
     tgagtccact gtatgaactg acaagggagg atgtaaaatg ggactggact aaagagcgtg      2220
     aagctgcgtt tcagacaaca aaaaaatgct tgatgtcaca tgatgtgcta gtgcattaca      2280
     gcactgaagt tccgatcaaa gtaacttgtg acgcgtctcc aaagagcatt ggcgccgtcc      2340
     tatctcacat ctttcccaat ggtgatgaaa aaccagttgc tttcgcgtcg agggtactga      2400
     cgcgcgcgga gcgtaactac tcacagcttg atagagaagc gctagcgata gtatttggag      2460
     ttaaaagttt ccaccggtat atttatgggc gtgattttac gcttgaaact gaccacaagg      2520
     cattatcttt tatttttggc tctaagaaag gtattcttca gatagctgct agccgagtac      2580
     agagatgggc aatatttctg tcagggtata attttcgtat caaatacatt aatggtaaag      2640
     ataacggccc agctgatgcc ttgtcacgcg tgttagtaga cgagtttaag gcaaagcaca      2700
     aggaatctga agaatacacg tatttgaact atttaagcga cgacattcag tccattaacg      2760
     tagacactgt tagagtagaa acagcgagag atccgatact aacgaaggtg tacgaattcg      2820
     tgtcaaatgg ttggccgaag aaagtagatg ataatttaca agcgtttaag aatagagaat      2880
     ttgaactttc aatcgaaaac ggatgtatta tgtggggtca tatgctagtt ataccgtacg      2940
     tgttgcgttt taattatttc caaaaattac atagcgcaca tgcgggaatt attaaatgat      3000
     tttggtggcc taaattagac cacgaaattg aaaatatagt gaaatcttgc aaactatgcc      3060
     tagaagtagc cgaaaaccca cccaaatcaa cattgcacgt ttggaaatgg ccagaagaac      3120
     ctaaccagag gattcacgca gatttttgcg gaccagttaa tggttttatg tatcttatta      3180
     ttattgacgc tcattctaaa ttgattgata ttaaggaaat gtctgatatc acagcgaaaa      3240
     atacgatcgg ggcttttaag gagtatttca gtgtttgggg acttcctaac gctttagtaa      3300
     cggataatgg accgacattt acgtcggaag ctttcaaaga ttttttggac aagaataacg      3360
     taaagcacca ccgaactgct ctttaccacc ccgcatcaaa cggtgcggcc gaaaacgcag      3420
     tgcgttcttt taaaaataag tttaagaaac tttgtaaaga taaactgtca cgccaggacg      3480
     cgttactaag atacttactg tattattgtt caacgccaca ttcaacgaca ggcgtatgcc      3540
     cggctgaact tcaaattggt aaaaaattgc gaacacgtct tagcgcaata agttcagtag      3600
     cttgcaaaaa tgtcaaacgc agccaagagc ggcaatgtag gaatttcaaa ggaaatagaa      3660
     acatagaatt taagaaaaac gatgtagtga tggcaaaaga ttacgcggtg gataagtggc      3720
     gagtagcaga agttgtagat aagctaggac cagtcacgta ctctgttagc acgaatgata      3780
     ctcgaacgtg gaagcgccac accgatcagc tgagatcgta cgagaatccg atgtacgccc      3840
     aaagtaacgt gtcaaccgac aatgttaata gtggatttct aatacctaat agcttttgta      3900
     aagaaccgtc tattatatcg aacagcaact ttgtaaaaca tcaatcattc ggaattgcaa      3960
     aagaagccac ggcatctcaa tccgagccca tgagtacgga aactgtaaac attaacgagc      4020
     aaccgaatgc aactattgct tctacagggc tatcacagaa cgtgagacgt tctactcgaa      4080
     accgtcgagc acccgagaga cttaatttat aattgccaaa ttaaggcgtg aggat           4135
//
ID   Gypsy9-NVi_LTR repbase;    DNA;    INV; 210 BP.
XX
AC   AAZX01007771;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   LTR retrotransposon from Nasonia parasitic wasp: long terminal
DE   repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9-NV;
KW   Gypsy9-NVi_I; Gypsy9-NVi_LTR.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-210
RA   Kohany O. and Jurka J.;
RT   "LTR retrotransposons from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1140-1140 (2007).
XX
DR   Genome; AAZX01007771; Positions   13679   13888.
XX
SQ   Sequence 210 BP; 53 A; 57 C; 53 G; 47 T; 0 other;
     tgttatgtat gtgcgaacta gtactaagta gcgacacatg atggtgctac gtaccagcgc        60
     ccaccgaagg gactgccgcg aggcgcgagg cccgcgtgcg aggagctctg acctgatcga       120
     gcgctcatct gtgtaacaac tcaacgtgtc gatcaataaa gagaatatcc agaaggcatt       180
     cttcttcctt accttcctcc ggatactaca                                        210
//
ID   GYPSY9_I    repbase;    DNA;    INV; 5171 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   20-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   GYPSY9_I is an internal portion of the GYPSY9 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; GYPSY9_LTR; GYPSY9_I.
XX
NM   GYPSY9_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5171
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY9, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 11-10 (2002).
XX
RN   [2]
RP   1-5171
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   GYPSY9_I is an internal portion of the GYPSY9 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY9_LTR.
CC   GYPSY9_I is flanked by 6% divergent LTRs. Therefore, the
CC   age of GYPSY9 can be estimated as ~4 million years old.
CC   The internal sequence is incomplete because of multiple
CC   deletions.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(639..1136,1093..1809)
FT                 /product="GYPSY9_I_1p"
FT                 /translation="NSAQQETSQQHKLRRLSEYGRKYEYGRKAVKAALEHQ
FT                 STVFEQKLSDTTHYMLRQIDTISIKSETPKVVVYEAAKVIPGITCDEPLDI
FT                 VKSIPEFDGKQENYVSWRQAATVAYELFRPYNGSSKXYQAVAIIRNKVRGT
FT                 ANSALSSFSTVLNFDAIICTPRLHIRRISTRLYARLDFTYADKTPLRVIQQ
FT                 ELATLMQGDMPLLKYYDEIEKKLALLTNKTIMSHEEAGAMILNEQHRNDAL
FT                 HAFIDGLKKSIKQTVFSARPKDLPTALALAQEAETSNENSVFKAVYAKHNE
FT                 EKYQKPSSQKTQGWRNNAQGQQNSDGSNYQGKNPHFNKGQALEKSNNGPNN
FT                 QSQGQKAGSSKQRHALPINKGFEPMEVETSTRSRQQTQFRGYNDQFMRSRQ
FT                 MQFQTTPRPPK"
FT   CDS           join(2709..3032,2950..3198,3129..3797,3733..4275,
FT                 4274..4882)
FT                 /product="GYPSY9_I_2p"
FT                 /translation="KNSYKNFYVQPPNTLFGLRSFLGLSSYYRCFTKGFAA
FT                 MARPPTDMLKGDNGKVSTNQSRRVRINLNQSQQQAFEKLKNVLASKDVLLI
FT                 YPNFNRPFDLTTDASAHGDKHQKMCSLFTQTSTDRLTSQLMLRHMETNETN
FT                 FATNERELLAIVWALKNLRNYLYGVKNLNICTDHQPLTFTVSDRNPNAKIK
FT                 RHLHRPPTVDIHGIGQKPKRKNKTLKAFIDEHNDNIIYTPGKENRVADALS
FT                 RQNVNALDNHPDSNESDNDSNIATIHSEQSLTYSVETSDIHLLKPLYYSRT
FT                 STDNIIQFTDRESLWHTVLDSVNANVVNAIHCELPILAFLQHRLIETFPST
FT                 TFRYCKYVVTDITDKTEQTEIITTEHNRAHRVAQENVKQILRDYFFSKMSR
FT                 TFCHHLNLNYCDGDRYNKNNAAHSVIILILIIAMAIATTKITDYSHTDYIP
FT                 IMDGNVTIWDEYLGHMTNVTSYEIYADETKRTIDLLQKDHMKRILTTDLGH
FT                 IDTLIATIRVKHRNKSSINPLGTALKVVAGTPDFDDWEQIRFRQEQLLESE
FT                 KRQVEINYKLQNRLNLLTKTLNDINKADEIYTEHLFETMLAKNRIQIESKL
FT                 VMFRKWFEKMVTSLTLAKIHLINPVILDDIDIKEINNEQLTNASVADILEV
FT                 AKAKVFQNNNMIYFLITFPNPELVCKKIKIFPVQHKNTILNLEDSNIFADC
FT                 GSKTIAINQCEATVSTTFCKTTSTPTCAEQLTVAQCGTRSSHLNPITEVDE
FT                 GIIIINDAAMRVTDQEGLNRTITRSYLITYVDRVSLNGTLFINQPSL"
XX
SQ   Sequence 5171 BP; 1939 A; 1147 C; 927 G; 1157 T; 1 other;
     ggcgcccgaa cgtagtaaaa gtgatctgaa accggatcaa aagaactcgc aacggaaaat        60
     atttaattaa agaacaacaa acaaaataac agtgaaatcg ttttatatta acatataaaa       120
     caaaacaaca acaacgaaaa actaaaaatt aaaagcccta gtgcaactac actaagcgag       180
     tgaaaaacaa aaaccacggc cggttcatat gtaacatata aaacgaaaac gtacaacaac       240
     aacaaaaaat aaaaccccag tgcaaatgca ctgagtaaac gaaatatata aaacgaaaaa       300
     tacataaccg acaaaagaag aacacaggag cggaccagca cacaacggca ctagaataat       360
     aacgaaaaat gtatgtgaga agttcattgc cttttctttc taaaacaaat taaataaaaa       420
     ttatatttaa aagtgattat ctgtcgattt attggcctag tgagagtagt agtaaactaa       480
     tatcaaaatt ttgttcagta caataaaagc cattgtttct tgcaaacaaa cacgaatgta       540
     tagtaacttg aatcgaagta attctagtag tgacgaggac acaataccta gttagatgga       600
     aaaaattaaa aacgaacaag ttacgataat gaatatagaa cagtgcacaa caggaaacct       660
     cgcagcaaca caagttgcgt aggttatctg aatatggtag aaaatatgaa tatggtagaa       720
     aagcggtcaa agccgcgctt gagcaccaat cgacggtttt cgaacagaaa ttatctgaca       780
     cgacacatta tatgctacga caaatagata ctatttctat aaaatcagaa actccaaagg       840
     tagtagtata cgaggcagct aaagtaatac cagggattac gtgtgacgaa cctttagata       900
     tcgtaaagtc cataccagaa ttcgatggca aacaggaaaa ttatgtttct tggcggcaag       960
     cagcaacggt tgcttacgaa ctctttagac catataatgg gagttcgaaa cmctatcagg      1020
     ctgttgcaat tatacgcaac aaagttagag gaactgccaa ttcagcacta tcctcattta      1080
     gtacggtgtt gaatttcgac gcgattatat gcacgcctag acttcacata cgcagataaa      1140
     accccactgc gtgttataca acaggaactc gcaacactga tgcagggcga tatgcccctg      1200
     ctaaagtatt atgacgagat agaaaagaag ctagcacttc taaccaacaa gacaataatg      1260
     tcacacgagg aggcaggagc aatgatcctt aatgaacaac ataggaatga tgctctacat      1320
     gccttcattg atggcctgaa aaaatccatc aaacagacag ttttttcggc acgtccaaag      1380
     gatctgccaa cagccttagc attggcacaa gaggcagaaa cgagcaatga gaactctgta      1440
     ttcaaagccg tctatgctaa gcataacgaa gaaaaatacc agaaaccctc gtctcaaaag      1500
     acccaagggt ggcgtaacaa cgcacagggt caacaaaatt cagacggctc caactatcag      1560
     ggtaaaaacc cacattttaa taagggccag gccctcgaga agtccaacaa cggaccaaat      1620
     aatcaatcac agggtcagaa ggctggtagt tccaaacaac gccacgccct cccaattaat      1680
     aaaggctttg agcctatgga ggttgaaacc tcaacacgct ctaggcaaca gacccagttt      1740
     aggggatata atgaccaatt catgcgtagc agacaaatgc agtttcaaac aacgccacgc      1800
     ccccccaaat aatcaaggcg ttgagcctat ggaggttgat agctgaacac gctatagcca      1860
     acagacccag tatagaagaa ataatgacca atccatgcgt agcagacaaa tgctgcatca      1920
     cacgtccctg gaatcacagg ggatcagaat acgatttgtt agcacaatca gaggtattag      1980
     caaccgatga cgatgacgca tccgacggcg aacagtgcaa ttttttaggg gaaactccct      2040
     gctaccgtac attacaagaa cagtagcagg gcatattata aacctccgga tagatacggg      2100
     agcatcaaaa aattatataa aaccacttcc ctttctgaaa acccttacac cagttgacaa      2160
     cctgtttcaa gtcaattcta tacacgggca taccaagata gagcagaaat accttatcta      2220
     tttatttggg acgaatactt gttcgtccta aacagttaaa aaaatttcga cggcattata      2280
     ggcctcgatt tattaagaaa tgttgatgca accattaatc ttacgagcaa tttaattgca      2340
     cacaaattcg gctcagagcc cctacaattt ataaagtatc aaaacgtgaa cttcatcaaa      2400
     attgacgaca gtaacattcc actggcggtc aaagaaaatt ttaacaaaat gatcatgacg      2460
     aaaatgtcac tagaaaaaac gtctggttat tgattatagg aaactaaatc aaaaaataat      2520
     agacgacaaa taccccatac atgccatttt caccatacat gggtagggct caatatttca      2580
     caacattgga ccttacttcg ggtttccacc cgattgaact agctgaaagg gatcgaaaga      2640
     aaacagattc aaagagagga gaacctggca ttcattgtgt caagtaaggg attaaaaact      2700
     tcgcctgaaa aaattcatat aaaaattttt atgtccaacc cccaaatact ctattcggcc      2760
     taaggtcctt cttaggctta tccagttact acaggtgttt cactaaaggc tttgcagcca      2820
     tggccagacc tcctacagat atgttaaaag gtgataacgg aaaagtaagt accaaccaat      2880
     ccaggagagt tagaataaac ctgaaccaaa gccaacaaca agcattcgaa aagttgaaaa      2940
     acgtcctagc atcaaaagat gtgctcctta tttacccaaa cttcaacaga ccgtttgacc      3000
     tcacaactga tgcttcggca catggagaca aatgagacaa acttcgcgac taacgaacga      3060
     gaacttcttg cgatagtctg ggcattaaaa aacctaagaa actatctgta cggagtcaag      3120
     aaccttaaca tctgcaccga ccaccaaccg ttgacattca cggtatcgga cagaaaccca      3180
     aacgcaaaaa taaaacgctg aaagctttta tcgacgaaca caacgacaat atcatttata      3240
     caccaggcaa ggaaaatcgt gtagctgatg ccttgtcccg tcaaaatgtt aacgcgctag      3300
     acaatcaccc tgactcgaac gaatccgaca atgactccaa cattgctaca attcacagcg      3360
     aacaatctct tacatactca gttgagacat ccgacatcca tctgttaaaa cctttatact      3420
     attcaaggac aagcaccgac aatataatcc aatttacaga ccgagaaagt ctatggcaca      3480
     ctgtactaga ctcagtaaat gcaaacgttg tgaatgccat acactgcgaa ctcccaatac      3540
     tagccttcct acaacacaga ctaatagaaa cattcccctc aacgacattc aggtattgta      3600
     aatacgtggt aacggacatt actgacaaga cagaacaaac cgaaataata accacagaac      3660
     ataacagagc acatcgcgta gcccaagaaa acgtcaagca gatattgcgc gactacttct      3720
     tttcgaaaat gagccgcaca ttctgtcatc atcttaatct taattattgc gatggcgatc      3780
     gctacaacaa aaataactga ctactcacat acggactata taccaattat ggacggaaac      3840
     gtaacgattt gggacgagta cttaggacac atgacaaacg tgacatccta cgagatatac      3900
     gcagacgaga ccaaaaggac tattgactta ttacaaaagg atcacatgaa aaggattctt      3960
     actacagacc tcggacacat tgacacgttg atcgctacaa taagagtaaa acatagaaat      4020
     aagagtagta ttaacccgtt agggaccgca ttaaaagtag tagccggcac accagatttt      4080
     gacgactggg aacagataag gttccggcag gaacaattgt tagagtcaga aaaaagacag      4140
     gtagaaataa actacaaatt acaaaatcga ttgaaccttt tgacaaaaac cttaaacgat      4200
     atcaacaaag ctgacgaaat atacaccgaa catttatttg aaacaatgct agcaaaaaat      4260
     agaatacaaa tagagtaaac tagtaatgtt tagaaaatgg tttgaaaaaa tggtaacttc      4320
     actcaccttg gcaaaaatcc atttgatcaa ccctgtcatt ttggacgata ttgatataaa      4380
     agaaattaac aatgaacaac tcacgaatgc cagcgtagct gacattctag aagtagccaa      4440
     agctaaagtt ttccaaaaca ataatatgat atatttttta attacatttc caaaccctga      4500
     gttagtctgt aaaaagatca aaattttccc cgttcaacat aaaaatacaa tattaaactt      4560
     agaagacagc aacatattcg cagattgcgg ctcaaaaacc attgcaataa accaatgcga      4620
     agccacagtg agcacgacat tctgcaaaac aacaagtaca cccacctgtg ccgaacaact      4680
     aaccgtcgca caatgcggca cccgatccag ccacctaaat ccaataacag aggtcgacga      4740
     aggtatcatc atcattaatg acgctgccat gagagtcact gatcaagaag gcctcaaccg      4800
     aacaatcacg aggtcttacc tcataaccta cgttgatcgg gtctccctaa atgggacatt      4860
     gttcatcaac caaccaagtc tctgaaacag aagccagcag catccgtcgg gactcaaatc      4920
     aatgtcacga gccacaaaaa tcaccacagc ctgccctacc tccatgagct aagcttgaag      4980
     aatctcatat gtagcttaaa agctgaagta ttgtcgagac cgatcgtaag cagtgtcatc      5040
     actttcacca tctcactcgc ctgtttcggc attgtttaca tcgcctatca ctggttcaaa      5100
     cgataacgcc taatcgaacc agagacagct ctgcagagac ccgaggacgg ccctcactta      5160
     actaagggag g                                                           5171
//
ID   GYPSY9_LTR  repbase;    DNA;    INV; 336 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY9_LTR is a long terminal repeat of the GYPSY9 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; GYPSY9_I; GYPSY9_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-336
RA   Kapitonov V.V. and Jurka J.;
RT   "GYPSY9, an old family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 12-11 (2002).
XX
DR   [1] (Consensus)
XX
CC   GYPSY9_LTR is a long terminal repeat of the GYPSY9 endogenous
CC   retrovirus. There are several copies of GYPSY9_LTR in the genome;
CC   they are ~96% identical to the consensus sequence.
XX
SQ   Sequence 336 BP; 115 A; 55 C; 71 G; 95 T; 0 other;
     agttatcata agtaagatca ataatactgg acttaatact aagtcagtat ccggtccgaa        60
     tctactacga taaatcagca gaatttgcgg ttactgtgaa tggacaccca cagtgggaac       120
     cacagtggtg cagcgttagc agtctggacg ttttggcgtg aggagtcacg aggcgcaacg       180
     tcgacagaaa taacggcagg tgtgccgcta tgaatatctg aatgtgaaat tgtactttag       240
     ttttaaacag aactcaaaag tgatcaatcg tattctgatg cacttcataa agataaaaat       300
     aattattatt aataataact taataattgt gtaatt                                 336
//
ID   Gypsy_6B    repbase;    DNA;    INV; 6556 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.03, Created)
DT   05-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Gypsy_6B-1 - Retrotransposon from Drosophila yakuba.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy_6B-1;
KW   Gypsy_6B.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6556
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-6556
RA   Bartolome C., Bello X. and Maside X.;
RT   "Gypsy_6B-1 - Retrotransposon from Drosophila yakuba.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
CC   Conceptual translation suggests that ORF1 and ORF2 overlap 54
CC   nucleotides. There is a one-nucletide frameshift (+1) between
CC   both
CC   ORF.
CC   Positions [1843-2119] - Retroviral aspartyl protease
CC   Positions [2429-2975] - Reverse transcriptase (RNA-dependent DNA
CC   polymerase)
CC   Positions [3301-3637] - RNase H
CC   Positions [4214-4660] - Integrase core domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           483..1862
FT                 /product="GAG"
FT                 /note="Conceptual translation, with homology with
FT                 GAG."
FT                 /translation="MQPSFSQYRNSTPYSTDSESDCENQPSPLRRTTANSP
FT                 AMAIDPEQLRAVIQAVVANTLADEAAKNELAQNEMRQKIQELASQLAATQV
FT                 APTSAVAPAIRAYEPIDITSGVPCNMTLDAVKYLPEFSGSQESYVSWRQAA
FT                 VAAYRIFKDYNGTSRHYEAVTIIRNKIRGAANNVLSSFGTVLNFDAIINRL
FT                 DFTYSDKRPMHVIEQDMSTLRQGSNMTLLEYYDEVEKKLTLLTNKAHMSHE
FT                 PSAANILCEKFREDALRIFISGLKRNLTDVLFAAKPKDMPSALALAQEVES
FT                 NHERYVFAASFARSQEDKDRKPTAKAQGRQLDKYDRHDPQPSNTKNPYFNR
FT                 QHKAQVHADPQGTKNYKDDGPPEPMEVDPSVSKLMQPTQANAYRNRRPATS
FT                 ERTGAVRKQQKVNFITQNAEEKTGAYAAAASKAESKIDDDAITGYDSDYLN
FT                 FLGENPCYPSSDEE*"
FT   CDS           5094..6554
FT                 /product="ENV"
FT                 /note="Conceptual translation, with homology with
FT                 ENV."
FT                 /translation="KIHFHRCRIFILLSLALVSAHVTNYSQTKYIPIIDGE
FT                 ILVWEELAYVTHSANLSEYMRVIEETSSMNEMFPQSHMRKLLEVDTLHLRD
FT                 TLDSLKVHHRIARSLDFLGSMLKVVAGTPDAGDLERIRFTEWQLTQSNNRQ
FT                 IKINTRIQSRINQLTTTVNQILQTHKNTQIDTGHLYETLLARNRILMMELQ
FT                 NLMLAVTLAKNNIVSPNILDHADLKSVWLKEPTDTPIGDLMSASSVKILQS
FT                 SNMMHFIIKFPKIKLSCKKVTIFPVACKGVMLRITDNMVAKCGEVVHTIKN
FT                 CIPTPGATFCQLSTESSCARELHAGVLAHCESQPSDLHPLTRVDEGIIIIN
FT                 DRPARVTVDNETEVYLRGTHLITFNDRVVINDTTFVNHDKAQTRAPGVANS
FT                 PSLNITANRDILSLPYLHQLSERNLEFIKEFGREIDTDHSHRIIFVAAAIC
FT                 CALVCIGIACLRYIGARRSAIQLNGMIAELGPTEDGRNLEGG"
FT   CDS           1808..4915
FT                 /product="POL"
FT                 /note="Conceptual translation, similar to POL."
FT                 /translation="LPKFFRGKSLLPVIRRRVAGVPMKFLLDTGASKNFIR
FT                 PRKELKGVRPVDSPFEIHSIHGTTIVTKKCFVSIFNLKATFFILPDFTIFD
FT                 GIIGADLLTQAGASLCLASAQLKWGQEVEKISFHKCTDVNFTNVECADAPP
FT                 LVKKAFLGMIRSRKNAFADPNEALPYNTSVVATIRTTSEEPIYAKLYPYPM
FT                 GAADFVNNEIQDLLKNGIIQKSVSPYNNPIWVVDKKGTDEAGNQNRRLVID
FT                 FRKLNERTIPDKYPMPDISMILGNLGKAKFFTTLDLKSGYHQIILAENDRE
FT                 KTSFSVSGGKYEFKRLPFGLRNAASIFQRAIDDILREQIGKTCYVYVDDVI
FT                 IFSENENAHVKHVDWVLKTISDANMRVSVKKSSFFKKSVNFLGFIVTSDGT
FT                 TTDPEKVRAIKEFPEPKTVFEVRSFLGLASYYRCFIKDFAAIARPISDILK
FT                 GENGSVSRHRSRHIQVQFNEAQKNSFEKLRNILASEDVMLRYPDYKKPFHL
FT                 TTDASAYGIGAVLSQENRPITMISRTLKDREMNYATNERELLAIVWALAKL
FT                 RHYLYAVKDITIFTDHQPLSFSVSDSNPNAKIKRWKGRIEETGAKVVYKPG
FT                 KENLVADALSRQQINAIEEQDAESCGATIHSEISLTHTIETTDKPLNCFQN
FT                 QLILEEARFPLKRSFVLFKNKKRHTINFTDKESLLNDLADAIVPKGVNALH
FT                 CDLHTLATVQDDLVRRFPTTKFWHCKNRVTDIFGVEEKREIILAEHNRAHR
FT                 SAQENVKQVLTEYYFPKMAKLANEIVQNCKTCAKAKYDRHPRKQEIGESPI
FT                 PSHVGEMLHIDIFSTDKKYFLTCIDKFSKFAVVQHVPSRTIEDLKPALLQV
FT                 MNFFPKAKVIYCDNEPSLKSHTITAMLDNHFGVSITNAPPLHSVSNGQVER
FT                 FHSTLLELARCLKIDKGMSDTVEIILLATTKYNKTIHSVIDKRPVDAIQEC
FT                 TDDTQKRIADKIKSAQDALRSRENASRQNRVFEVGEKVLVKTNRRLGNKLT
FT                 PLCEEKAIQADLGTTVLIEGRVVHKDNLK*"
XX
SQ   Sequence 6556 BP; 2100 A; 1551 C; 1402 G; 1503 T; 0 other;
     actggcgccc aaccagtggt aaaaaccacc acccaccacc accatcacca acaccgccca        60
     cacagctact aaatttgcgg caaagcaaaa gacagcggcg cgggaaaagt gaagggaatt       120
     agtgacaaaa taacacacac accaaaaaca aaaaattatg tgagtggaaa ccgatgctaa       180
     acgcatttta agtctgtgaa tttctaaaaa aaaaaatata taataataaa agaattatta       240
     atccggcaga tacgctaaaa catggtctcg catcaatgta aatgaaaaca gaaatcatat       300
     aattgttttt tataacagcg catacgttcg cttttcattt attgttgttg ttttgtgttt       360
     ccattcgatt caagcgcgac attcgacgct gcagcctttg tctttagttg ttgtttgttt       420
     ggctttggtc aactgctgcc cacacggaca gctttttcat acctaagcga attggactgc       480
     tcatgcagcc cagtttctca cagtatagga atagtacacc atactccacg gactcagagt       540
     ccgattgtga aaatcaacct tcccctctaa gacgtacaac cgcgaattcc cctgcaatgg       600
     cgatagaccc agaacaactc agagctgtaa tacaggcagt ggtggccaat actttggcgg       660
     acgaggctgc caaaaacgaa ctcgcacaaa atgaaatgcg tcagaaaatt caggagctgg       720
     ccagccagtt ggcagcaaca caggtcgcgc ccacctcagc agtggccccc gcaattagag       780
     cttacgaacc catagacata actagtggtg taccatgtaa catgacttta gacgccgtta       840
     aatatttgcc tgaattctcg gggtcacagg aatcatatgt ttcgtggcga caagcggcgg       900
     ttgctgcgta tcgcatattt aaagattaca acggcacctc tcgccattac gaggcggtga       960
     caattattag gaacaaaatt aggggcgcgg ccaataacgt cttatcctcg tttggcactg      1020
     tactgaattt cgatgccatt ataaatcggc tcgatttcac ttacagcgac aaacgcccaa      1080
     tgcatgtcat tgagcaggac atgagcactt taagacaggg aagcaacatg accctgttgg      1140
     agtattatga tgaggtcgag aaaaaactca ccttactcac aaataaagcc catatgtctc      1200
     acgagccatc ggcggcaaat atattgtgcg aaaaattccg agaggacgcc ttgcgtattt      1260
     tcatctcggg acttaaacgc aacctcactg acgtgctttt cgcggcgaag ccgaaagaca      1320
     tgccgtcagc cttggcctta gcgcaagaag tggaatctaa ccacgagagg tacgtttttg      1380
     cagctagttt tgcaagaagt caagaagaca aagatcgcaa acctactgca aaagcgcagg      1440
     gtcgtcaact tgacaagtac gaccgccatg acccacagcc tagtaatacc aaaaacccgt      1500
     attttaatag gcagcataag gcacaggttc acgccgaccc gcaaggtacc aaaaattaca      1560
     aagacgacgg cccaccagag cctatggagg tcgatccctc agtttctaaa ttgatgcagc      1620
     cgacccaggc aaatgcctac cggaacagaa gaccagccac ctccgagcgc acaggcgccg      1680
     tgaggaaaca acaaaaagtt aacttcatta cgcagaatgc ggaagaaaag acaggagcgt      1740
     atgccgccgc cgcttccaaa gcggaatcga aaatagacga cgatgccatt accgggtatg      1800
     attctgacta cctaaatttt ttaggggaaa atccctgtta cccgtcatca gacgaagagt      1860
     agcaggggta ccaatgaaat tccttttaga caccggcgcg tcaaaaaatt tcatccggcc      1920
     tcgcaaagag ctaaagggtg tccgcccggt ggactctcct ttcgaaattc attcaattca      1980
     cggcaccacc atcgttacaa aaaaatgctt cgtctcgatt tttaatttga aagcgacttt      2040
     tttcattcta ccagatttta caatattcga cggtataatc ggggccgatc tgttaacaca      2100
     ggccggtgca tcactttgcc tcgcttccgc ccaactcaaa tggggtcagg aagttgagaa      2160
     gatttcattc cataaatgca ctgacgtcaa cttcactaac gtggagtgcg cagatgcacc      2220
     acctttggtg aagaaggcat ttctagggat gataaggagc cgaaaaaacg ccttcgcaga      2280
     tcccaacgag gccctgccat ataacacatc ggtagtggcc acgattagga ctactagcga      2340
     agagcccatt tacgctaaat tatatccata ccccatgggg gcagcagatt tcgtcaacaa      2400
     cgaaatccaa gacctgctta aaaatggtat aattcaaaag tcggtgtctc cttataacaa      2460
     cccaatatgg gtggttgata aaaaaggaac cgacgaggcc ggcaatcaaa atagacgatt      2520
     agtcatagac tttcgtaagc taaacgaaag aactatccca gacaaatacc ctatgccaga      2580
     tatctccatg atactgggca acttgggcaa ggccaaattc ttcacgacac tggacctcaa      2640
     gtccgggtat caccagatca tcttagcgga aaatgaccgc gaaaaaactt ccttctccgt      2700
     aagcggaggg aagtacgaat tcaagaggct tccctttggc ttgagaaatg ctgccagcat      2760
     cttccagaga gccattgatg acattctcag agagcaaatc ggcaagactt gctatgtcta      2820
     cgtcgacgat gtaataatct tctcagaaaa cgagaatgct catgtcaagc acgtggattg      2880
     ggttttaaaa accataagcg atgcaaatat gagagtctca gtgaaaaagt caagtttttt      2940
     taaaaaaagc gtaaactttc ttggctttat agtcaccagt gatggcacta ccaccgaccc      3000
     agaaaaagtc agggccataa aggagttccc tgaaccaaaa acagtatttg aggttagatc      3060
     atttctaggt ctcgcgagct attacagatg cttcattaag gactttgcag ccatagcaag      3120
     gcctatttcg gacatcttaa agggcgaaaa cggaagtgta agcagacaca gatcgcgaca      3180
     catccaagta caattcaatg aggcgcaaaa aaattctttc gaaaaactgc gcaacatttt      3240
     agcatccgaa gatgttatgc tccgataccc ggattacaag aagccattcc atctaacgac      3300
     ggatgcttca gcctacggta ttggagcagt gctttcacag gagaaccgtc ctattacaat      3360
     gatctcgagg acattaaagg acagggaaat gaactacgcc acaaatgaaa gggaattatt      3420
     agccatcgtt tgggctttgg ccaaactgag acactattta tatgcggtga aagatataac      3480
     tatcttcacc gaccatcaac cattgtcatt ctcagtatca gactctaacc ctaacgcgaa      3540
     aattaaaagg tggaagggtc gcatcgagga aacgggtgcg aaggtagtct ataaaccggg      3600
     aaaagaaaat ttggttgctg atgccctgtc taggcagcaa attaatgcca tagaagaaca      3660
     ggacgcagaa tcatgtggtg cgaccattca cagtgagatt tccctcactc acaccataga      3720
     aactacggat aagcccctaa attgcttcca gaaccaacta attctggaag aggcccgctt      3780
     tccgctaaaa cgctctttcg ttctctttaa aaataagaaa cgacatacaa tcaacttcac      3840
     tgacaaggaa tcattactca atgaccttgc ggacgcaata gtccccaagg gcgtaaacgc      3900
     cctccattgc gatttgcaca cgctagcaac ggtgcaggac gacttagtcc ggagattccc      3960
     gactacaaaa ttctggcact gcaaaaaccg tgttacagac atttttgggg tcgaggaaaa      4020
     aagggaaatc atattggcag aacacaatag ggcccaccga tcggcccaag aaaatgtgaa      4080
     gcaggttctc acagaatact acttcccaaa aatggccaaa ctggccaatg aaattgtcca      4140
     aaactgcaaa acatgcgcta aagctaaata tgataggcat cctaggaagc aagagattgg      4200
     cgagtctccg attccctctc atgtaggaga aatgctacac atagacattt tctcaacaga      4260
     caaaaaatat tttctcactt gcatcgacaa gttttcgaaa ttcgccgtcg tacagcatgt      4320
     accgtcaaga acaattgagg acttgaaacc ggccttgtta caggtcatga atttcttccc      4380
     aaaggccaaa gtgatttact gcgataacga gccatcgtta aaatcgcaca cgatcacggc      4440
     catgctagac aaccattttg gcgtcagcat cacgaatgcg ccgccccttc acagtgtctc      4500
     aaacgggcaa gtggaacgtt ttcacagcac cctactagag ctcgccaggt gcctaaaaat      4560
     tgacaagggc atgagcgata ccgtggagat aatcttgtta gccacgacca aatataacaa      4620
     aacaatccat tcggtcatcg ataagaggcc agtcgacgca atacaagaat gcacggacga      4680
     cacacaaaaa cggattgctg acaaaattaa gagtgcccaa gacgcgctaa ggtctagaga      4740
     gaatgcttct cggcaaaata gagtcttcga agtgggcgaa aaagttttgg tcaaaactaa      4800
     tagaagactt ggcaataaac tcactccctt gtgtgaggaa aaagccatac aagcagacct      4860
     ggggaccacg gtcctcattg aagggagggt ggtccacaaa gacaatttaa aatgactctc      4920
     tcccttaatt tttaattttt tattatcact acctattatc agccgtttgg cgaacttcca      4980
     tttaatagac attaagtacg ttgccaaagg cgcgatgttt tagttttaat tggtattaat      5040
     atagtattaa ttggtgatgg gataaacctt agcgaacaag aaaaagcgac taaaaaatac      5100
     atttccacag gtgcagaatt ttcatcctcc tctcactggc attagtgtca gcgcacgtca      5160
     ctaactattc gcaaacaaag tatatcccca tcatagatgg agagatcctg gtatgggagg      5220
     agctcgcata tgtgacccac tcggcaaatc tctcggaata catgcgcgta atagaagaaa      5280
     caagcagcat gaacgagatg tttccgcagt ctcatatgag gaaattgcta gaagtggata      5340
     ccttgcacct tcgagacacg ctggattcgt taaaagtcca ccacagaata gcaaggagtt      5400
     tagattttct aggctcaatg ctaaaggtag tagcggggac gccggatgcc ggcgatctag      5460
     aaagaattag gttcacagag tggcagttga cacaatcaaa caataggcaa atcaaaatta      5520
     atactaggat acagagtcga atcaaccaat taacaacaac agtaaatcaa atcctgcaaa      5580
     cacataaaaa tacccaaatt gacaccggcc atttatacga gacactgctg gctaggaata      5640
     gaatactaat gatggagtta cagaatttaa tgttggctgt aacgctggca aaaaacaata      5700
     ttgtcagtcc aaatatccta gatcatgcag acttaaaatc agtttggctg aaagaaccca      5760
     ccgatacccc cataggggat cttatgtccg catcgtctgt aaaaatactg caatcctcta      5820
     acatgatgca ctttattatc aaatttccca aaataaaatt atcttgtaag aaggtcacta      5880
     ttttcccagt cgcttgcaaa ggagttatgc tgcggataac cgacaacatg gtagcaaagt      5940
     gtggtgaagt agtccacaca atcaaaaatt gcatcccaac accgggggct accttttgcc      6000
     aactatcaac ggaaagctca tgcgccaggg aactacacgc aggcgtccta gcgcattgcg      6060
     agtcgcaacc aagcgaccta cacccgctca cccgcgtgga tgagggtatc atcatcatca      6120
     atgaccggcc agccagggtc acggtagaca acgaaacaga agtctaccta cgcggcacac      6180
     atctcatcac cttcaacgat cgcgtcgtga taaatgacac cacctttgta aatcatgaca      6240
     aggcccaaac aagagctcca ggggtagcga attccccatc attgaatatc accgccaaca      6300
     gagatattct gagcctcccc taccttcacc agctaagtga acgtaacttg gagttcatca      6360
     aagagttcgg gagagaaatt gatactgatc attctcatcg cataatattt gtcgcagcag      6420
     cgatttgttg tgcattggtt tgtatcggca tcgcctgtct acggtacatc ggagcgcgga      6480
     gatctgcaat ccagttaaac gggatgatcg ccgaattagg accaaccgag gacggccgta      6540
     atcttgaagg gggagt                                                      6556
//
ID   Gypsy_DG_I  repbase;    DNA;    INV; 3090 BP.
XX
AC   .
XX
DT   10-MAY-2009 (Rel. 14.05, Created)
DT   10-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   Gypsy_DG: A Gypsy-like family of LTR retrotransposons in
DE   Drosophila grimshawi.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag-pol;
KW   Gypsy_DG_I.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-3090
RA   Styles P.;
RT   "Gypsy_DG: A Gypsy-like family of LTR retrotransposons in
RT   Drosophila grimshawi.";
RL   Repbase Reports 9(5), 962-962 (2009).
XX
DR   [1] (Consensus)
XX
CC   Gypsy_DG is a Gypsy-like family in Drosophila grimshawi, with a
CC   copy number of 6 elements. The consensus sequence is 3090bp in
CC   length, and contains a single open reading frame encoding a
CC   gag-pol polyprotein between positions 1082 and 2743. Maximum
CC   identity between flanking LTRs is 98.4%, suggesting recent
CC   activity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1082..2743
FT                 /product="gag-pol"
FT                 /translation="MSVSRSIDNLNSLANLESVSCCVCTLEVEHPAQLLAT
FT                 SCNHYFHHTCFNNRSGNKRVCPICRTSLSTSTQNLAVELAASQPAKVALKP
FT                 QSLITRSKSKVVKVITEAMPKVATTGKMQTSKAGISSVSAVRQGNESCTVP
FT                 QSNPVEVIATTSTELSANQEARTSQQSHPVVDQNNAHNLLATNLQQTVVSA
FT                 MATAIAQQTQLLSQAIETGFQRMQNPVGNPADVQPSARPSVHSRERQTFEQ
FT                 LFQLPGPGDSENVPSNGVPPTSSFTPIGSQQCESLRSDRISQIISNWKLRF
FT                 SGRSSLSVEEFIYRVEALTAQSLDGNFELLSRYASNLFEDSGSEWYWRYHK
FT                 SVPCVCWPDLCRALKAHFKDGRTDLDIRTAISLRKQKYHEPFDTYHEAIMF
FT                 LADRLTQPMSEQSLLEVLQANLLPEVQHEILYVPIYNLEQLRHVVRRRERF
FT                 MKAVTKTNVPSQRLIPGRQVHEIAMQTDCEQELENPEIAAMNVSCWNCGRH
FT                 GHRYQECEAERKVFCYGCGRRDTYKPSCTKCNASKNEVSRAPTTSARKLVS
FT                 KGTNTE*"
XX
SQ   Sequence 3090 BP; 920 A; 621 C; 657 G; 892 T; 0 other;
     gttatttata attagttata atatttattt tggcgcccaa cgtatggggc ctgtttcaag        60
     taaaaatatt agtgttcaat aagctaatag gaggttaatc gaaaggccat cggttaggct       120
     tccgatctac agtagtattg gaaaaaaaaa aagaagagaa accatgctag tattttgcac       180
     ctgtacaggc tcacaaattt cgaggtcagc tacttctgat gtagcagcta tctgcttaca       240
     caaatgactt catatcccca tacctttgtc cttgttttga taatagagat gtagtaatat       300
     tattcgattc caaaatattg ataatgaccg tctcagtaaa caaaacaata ttgcgctcgt       360
     gtaagttcta ggaacaatta caatttcaaa ataattgtgt tgccagactc acaatgcaca       420
     agcgcaaatt cctcctagtg gtgctacgat tggtgtaacg ctttagctgg acgaggattc       480
     atggataatt aagctatgat ccgccgctga gtggaacatt aaaagtagtt actccctacg       540
     tgtctgtgga catacctaca aaccaaaata ttgggccgga ttcgggtgtc gctggattca       600
     actcaggtgg ttggtcgcgc catttggatc gggtttaata tcgcggatca cagtctattt       660
     tcttagtagt tgagcatttg attctattcc ggatgcgaca gtcttttgcc ggaggagtat       720
     agttcctatt ggctggtgct tctttttctt aaactatact ctcgcctgga acaataaccg       780
     ttttatttgc aaacgaaaat gggatcattg atgcaattac acttttcttt tacctctatc       840
     ctatcgtttc tcttttccaa atctttttgg gggtcaaata aatcaagtaa aggtcggcat       900
     acctactctc aagaaggaat tcgcattgtt gtccacactc aaataatgaa ttttgaatat       960
     atcgctcggc gtaaattagt tttttttctc ttatcttttt tttagtaatc tttagcacat      1020
     ggtttgcgtt tgtttctcat ttatatgaat cattttaata gtttgctatg ttagtatagc      1080
     aatgtcagta agtcgaagta ttgacaattt aaattctctt gctaatttgg aaagtgtgag      1140
     ttgttgcgtg tgtacattag aggtggaaca cccggcacag cttctagcca ccagttgtaa      1200
     ccattatttt caccatactt gttttaacaa tagatcaggt aacaaacgag tttgtcctat      1260
     ttgtagaact tcacttagta cttcaactca gaatttggca gttgagttag ctgcatcgca      1320
     gcctgctaag gtggcattga agccccaaag ccttataaca cgatctaagt ctaaagtcgt      1380
     taaagttata acggaagcta tgcctaaagt cgctacaaca ggaaaaatgc agacttcaaa      1440
     ggcgggaatt agctcggtat cagcggtaag gcagggaaat gagtcgtgta cagttcctca      1500
     gtccaacccc gtcgaagtaa tagctactac tagcacagag ctaagtgcta atcaagaggc      1560
     aagaacgtct cagcagtcgc acccagttgt ggaccaaaat aacgctcaca acctgcttgc      1620
     taccaacttg caacaaactg ttgtcagcgc catggcgaca gcaattgctc aacagaccca      1680
     acttttgtcc caagccattg agacagggtt tcaaagaatg cagaatcctg taggcaaccc      1740
     tgcagatgta cagccatctg ctaggccatc tgttcatagt agagaacgac aaacgtttga      1800
     acaactattt caactccctg gtccaggaga ttcggaaaat gtccctagta acggtgtacc      1860
     gccaacaagt agtttcacgc caataggatc gcagcagtgc gaaagtttac gttctgatag      1920
     aattagccag attatttcta attggaagtt gagattttcg ggacgttcat cgttatcggt      1980
     agaagaattt atatatcgcg tagaagctct tacagcacag tcgttggatg gcaactttga      2040
     gctgctatct cgctatgcta gtaacttgtt tgaagacagc ggtagcgaat ggtattggag      2100
     ataccataaa agtgttccgt gcgtttgttg gccagacttg tgtcgagcgt taaaggccca      2160
     ttttaaagat ggtcgaacgg acttagacat tcgcacagcc atttcgttga gaaaacaaaa      2220
     ataccacgaa ccttttgaca cctatcatga ggctattatg ttcttagccg ataggcttac      2280
     acagcctatg tccgagcagt ctttgcttga ggtgctgcaa gcaaatttat taccggaagt      2340
     gcagcatgag attttgtacg taccgattta taatctagag cagttgcgac atgtcgtacg      2400
     cagaagagaa cggttcatga aagcagttac aaaaactaat gttccttctc agcgcctaat      2460
     tccaggacgg caggttcacg aaattgcaat gcaaacagat tgcgagcagg agttagaaaa      2520
     tccagagatc gctgctatga atgtttcgtg ttggaattgt gggagacatg gtcatcgata      2580
     ccaagaatgt gaagcagaac gtaaagtgtt ctgttacgga tgcggaaggc gtgacacata      2640
     caaaccgtca tgtaccaagt gcaatgcttc aaaaaacgaa gtgtcgcgtg caccgacgac      2700
     cagtgcacgc aaactggttt cgaagggaac gaacaccgag taactgatga aatgatcagt      2760
     tcactcgatc aactaccgga cttgacttta ctcgttaggc taagagacag caaaattcaa      2820
     aaaacttgaa cgaaaaatta cctgatgtta ctaaagtctt tgccaaaggt ttcagtgcaa      2880
     aattggcacc agtcttcgta aaagctagaa tcaaatccaa agtcggtcat agctattacg      2940
     aattagaaga tttacaaggc cgcccaattg gcaaatatca cgcaaaggac attaaacaat      3000
     gataacctta tctacattac tttgtgctct ccaagcggtt atcactcttt gatgttttca      3060
     acaccaaagt gtgattttgg cggaagggtg                                       3090
//
ID   Gypsy_DG_LTR repbase;    DNA;    INV; 2446 BP.
XX
AC   .
XX
DT   10-MAY-2009 (Rel. 14.05, Created)
DT   10-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   The LTR sequence flanking Gypsy_DG_I in Drosophila grimshawi.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy_DG_LTR.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-2446
RA   Styles P.;
RT   "Gypsy_DG_LTR: The LTR sequence flanking Gypsy_DG_I in Drosophila
RT   grimshawi.";
RL   Repbase Reports 9(5), 963-963 (2009).
XX
DR   [1] (Consensus)
XX
CC   Gypsy_DG_LTR is the LTR sequence flanking Gypsy_DG_I in
CC   Drosophila grimshawi. The LTR is longer than most Gypsy LTRs,
CC   with a consensus sequence 2446bp in length. There are 40 copies
CC   of the LTR in the genome, 12 flanking Gypsy_DG_I and 28 solo
CC   LTRs.
XX
SQ   Sequence 2446 BP; 819 A; 450 C; 423 G; 754 T; 0 other;
     tgtaatgatt cgcttgtcga gctcataaat ttagctttct cctaaaaagg ggcaataatt        60
     tgtgcgtttc acacatagcg ccatctatga gccattgtgg tgagcttcca aaaaaaaaaa       120
     aaaaataaaa gaaacaataa gaaaggaaat tccaaaattg ttgaaataaa gggtgaagca       180
     aaattctgcc aaaacgtgtc ttcataagtt cttttgaccg cggacacatt cctttcattt       240
     cctagccttt gagcgagcaa gttgtggacg ttgcaaacat tggaaaaaaa aaaaaaaaaa       300
     tgttaataaa gttaataatt tgcggtacag tgtaatagaa aaattagtgc cgcacaaaac       360
     ggtttttata tcagtgccta ttcagaaatt tgtcaagggt aaatgaatta acaaccattc       420
     aaaaaatgac accaatttaa ataaatgtgt tgttttagaa tgggcactta atacggtgct       480
     taatatggat tggtagttcg aagaagttaa taaatataac gcctttgcca cgcccatgtt       540
     cacggtggag atgtctgtgc taagttgatt gcccaaattg ctgtatttaa ggtgtttaag       600
     agagtctctc ttaaaactcg cccttggcgc acgccttaac cttcgatcgt acccaccaac       660
     tcatgtatgt cgtgctaaga agaatatgta aaagggcatc gagcgcatct cattagcatt       720
     cctagaccga acttaaacgg atgaacatcg tcaactgttg gcggaccttc tgctacattc       780
     caagcctatc agctttaccc agctacctca tggagtcaac tttaataatt gcaaaagtag       840
     caaggagtta gagcaatttc cttccttttt ttttatcttt atatacaaaa gtgaataatg       900
     aaaaaaaaat taacctcagt gaaaaattca gtattcatat gtctagcaaa tagaaaaagc       960
     tcgttcacgt gtgcactcgg cgaagtaaat gagtaaaagt taaattaaat gtaatttgaa      1020
     aagaaatttt tttttgttta attaatcata aaaattatag tgataatgca agtaaaagaa      1080
     aaaaaaatgg aaattgtgac gattctgtgt aattaagaaa aaaaatttat attttatata      1140
     actaataagt accctctatt tagaattgca tgcggaatga aaaacacaca aaaatttgtc      1200
     tcagcgtacg gcttatgctg acagcgagct ttcgcacgtg gcttgtgata atcgctcact      1260
     cccatgatca ttatacgctg cgagctttcg cacgaggctt gaaatatttg cactctctct      1320
     tcataactaa ttacagcgac acacacacac accaacacca ggaagtactt ccagcgtggg      1380
     atgatgtatg taagttactc tctttcttta ttatgagtcg cgcttagata acctttcgca      1440
     agctactctt taaacttgag caactgtact tttacaacag cagctgcgct aagcaactat      1500
     atatctacct ttaaattatt tttgtttgtt tttcataacg caaggcgacc atgctctgaa      1560
     tgcataatat tcatataaac taatatagcc cctaaaccta tatatatata taccccacac      1620
     cgcgattaat attggattcg atcgtattac cattatacag aacacaagaa acaaagacaa      1680
     gtgttagttt ttttttgatt ttgttcttac ttgcatatcg aatagagtta aaaaaaaaaa      1740
     aaattgtttc atgaaatcat agattagaat atgtgcatgc ccgggttgaa ttgatgatgc      1800
     atgtatctac tgcaggacca cttgcagaca gtaaccgcgc tgatcaactg gcattttttt      1860
     ttttgttaaa taaatttttt gaaaatctct ctgcaaacat gcatataaac tataattatc      1920
     acttccttgt atatataact ataatgttct aatggtatta atcaaactta catttctaaa      1980
     tataaaatat ctatatcttt ctaagtttac tatttaaatg tattgaattc gttgttaagt      2040
     ggataacatg cagttcctga tggaggtagg atagctgccg taggtcatcc caagggatcc      2100
     tgatgtatat atcgggccgc aggatcaagg cagggtgggc gagtgcgcca aaaaggtagc      2160
     accacaataa aaaaaaaagg atgacctgat tgcttgagtg ttccgatcct cctattactt      2220
     ttgacctttt tcttctttct catgtccatg gtctgtcttc gtctgtcgtt ctttatgtaa      2280
     aaatatagta cgcgataaat aaataaatat aactaataac taggaagcca ttttaatatg      2340
     tcggttgacc aataataacc caccccaatt gccggcgagc atcggcccga gcaagcgcgt      2400
     actccgaacg tattaatagc ccatctgctc cacgttgttc attaca                     2446
//
ID   GYPSY_DS    repbase;    DNA;    INV; 7522 BP.
XX
AC   X72390;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.subobscura gypsy retrotransposon, complete sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSYDS;
KW   GYPSY_DS; LTR; gypsy transposable element; Long terminal repeat;
KW   retrotransposon.
XX
OS   Drosophila subobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-7522
RA   Alberola M.T. and de Frutos R.;
RT   "Molecular structure of a gypsy element of Drosophila subobscura
RT   (gypsyDs) constituting a degenerate form of insect
RT   retroviruses.";
RL   Nucleic Acids Res 24(5), 914-923 (1996).
XX
RN   [2]
RP   1-7522
RA   Alberola M.T.;
RT   "GYPSY_DS.";
RL   Direct Submission to Genbank (05-MAR-1993)T.M. Alberola,
RL   University of Valencia, Dept of Genetics, Dr. Moliner, 50, 46100
RL   Burjassot, Valencia, SPAIN.
XX
DR   GenBank; X72390; Positions       1    7522.
XX
CC   LTR 1..613
CC   /note="long terminal repeat (LTR)"
CC   CDS 1187..2368
CC   /note="ORF1"
CC   /codon_start=1
CC   CDS 2371..5400
CC   /note="ORF2"
CC   /codon_start=1
CC   CDS 5511..6665
CC   /note="ORF3"
CC   /codon_start=1
CC   LTR 6910..7522
CC   The three elements, D.subobscura (GypsyDs), D.melanogaster
CC   (GypsyDm)
CC   and D.virilis (GypsyDv), show a structure that maintains a common
CC   mechanism of expression. ORF1 and ORF2 show typical
CC   motifs of gag and pol genes respectively in the three Gypsy
CC   elements.
CC   The main differences among the Gypsy elements are found in ORF3
CC   (env-like gene); GypsyDm encodes functional env proteins, whereas
CC   GypsyDs and GypsyDv ORF3s lack some motifs essential for
CC   functionality
CC   of this protein.
CC   Comparative analyses of divergence and phylogenetic relationships
CC   of
CC   Gypsy elements indicate that the Gypsy elements belonging to
CC   species
CC   of different subgenera (GypsyDs and GypsyDv) are closer than
CC   Gypsy
CC   elements of species belonging to the same subgenus (GypsyDs and
CC   GypsyDm). These data are congruent with horizontal transfer of
CC   Gypsy
CC   elements among different Drosophila spp.
XX
SQ   Sequence 7522 BP; 2340 A; 1779 C; 1543 G; 1860 T; 0 other;
     agttaagaac taagtacata agttattccc ttttttgtct tactttgtct aacacacagc        60
     cttaagcaat ctgttgccct cagcaacaaa gtaatatttt gtaaacaatg ctgactcgct       120
     atcaagagtt ctgcgcgcag caactgtaaa cggacaccgt gttgcttgcg caagaatgct       180
     gagtcggcac gccgactcga gcgaatggcg tgatgcattg actttgtagg gctaacttaa       240
     gttcaaatat tttctgcagc cagcagtctg aagaacacag gataaccaaa cagttgagtt       300
     ttctaataaa gttcttgtgc tccggtaact ccgtgaaaga tttattattg aagttataat       360
     tgttgactaa gcattagcta gcaacacaca caatactaaa tcccatagca gctaacactg       420
     cccaccgacg acatccaatt acgcacctga cgtgtcatct actagagcct tgccagcaga       480
     gactacgcgg gaccggattg gattaactca tagcagctaa cactgcccat caacaacatc       540
     cacttacgca cctgacgtgt catctactag tgccttgcca gcagagacta cgcgggaccg       600
     gattggatta attggcgccc aaccaataaa taagaaccca ttgtcatgta agttcataag       660
     tgatttcggt ttgaaaaaat tattaccgat acgtgtgatc ttaaaaaaca agtaaagtaa       720
     tattgctgct tttctgtcag catttcattt taaacgttgc atacttttgc taaaatttgt       780
     tgcatacttt taccagcgtt atttttttca aaaaacattg cataccgtaa acaaaactat       840
     gcatactttt gttgaaaatc gttgcatact tttataataa agcattgcat accccacaca       900
     attaattact gcatactttc ggcagcacta tattttttgc tgcataccct taacaaattt       960
     tataataaat attgcatacc ccaagttaca ctattttcta ttattgccaa cagttttaca      1020
     tgccgacctt tcacgatcgg cctaagtttt gaaaagtgcc aaccataagc caatgagttg      1080
     gaattataga gaagtaaaag ttgaatataa tagtgacgat agttgggagg gggaattaaa      1140
     ttgctcagta gatcctactc cagcagacac cgctgcaatt gaataaatgg agccagctca      1200
     acttttggct atcgttgagg gtgccgtcag gcaagctttg gagcaacaac aaaatcaatt      1260
     tcaagcacaa ataaccgcct tggctacaca agtacagagt ttgcaggtgg aagcgcccca      1320
     aatcatcaca tacgagaaaa tttccgtcga tcccgacgct aaatgcgata tccccttaga      1380
     cattattaaa tctgtgccgg atttcaccgg tgcgcaggac gagtatgtag catggaggca      1440
     agcagccatc tacgcgtacg aactattcaa gaattttcca aagagcactg cacactacca      1500
     agcggttgcg atcattagga ataaaatcaa aggctcagct ggagccttac tagtgtctca      1560
     caatactgtc cttaatttcg atgcaatact agctaggtta gattgcacat actcggataa      1620
     aacatccttg cgtttgttga gacaaagttt ggagttagtc tcgcagggcg aaatgtccct      1680
     catgcaatac tacgatgatg ttgaaaagaa gctcacgctc gtcaccaaca aaatcgtaat      1740
     gtctcacgac caagaaggcg ccgatttgct caaccgggag gttagagacg acgccttaca      1800
     cgcttttatc tccgggctta aaaagtcatt gagagcggtt gtgtttcctg cacaaccaaa      1860
     agatctacca tccgctctgg ccctggccag agaagcagaa gctagcattg agagaagcat      1920
     gtttgccaac tcttacgcta aagccttgca ggaccgagcg caaattgctg agggtaacaa      1980
     agtccgtgcc caaggcaaac cgaccagatt taacaaagat gagcaaaatc aggagagaaa      2040
     tccccatttt gtgaagcgcc aaaagggctg gccccagccc caggccccta aagacaatca      2100
     aaccgaggct ccgcagccca tggaagttga ttcttcctcc agatttagac aaaaaaccga      2160
     ctatagcaag cgtcaggcta acgaatccaa cgcaccaaaa cacaagaatt cgtcagaccg      2220
     ttcaacaggt caaaaacgcc aacgcgttaa caatgttgta caaacagact ccaaagaagc      2280
     tgtaacagag tacgacaagt cggttaattt tttagggaac actcccggct tccgtacatc      2340
     gaacggcggt tggctgggag aactctgaaa atgttgattg acactggcgc ggcaaagaat      2400
     tatgttaagc ccttaacaga gctaagaacc ataacgccgg tcgccaagtc attctcggta      2460
     aactcgatcc acgggtctac cgaaatcaag cgcaaatgct tgatgaatat tttcaaacat      2520
     acctccccat tttttctcct cgacacccta aactctttcg acgcgatcat aggcttcgac      2580
     ttgctaacac aagccggggt caaattgaac ttggaaaaaa atactctgga ataccagggt      2640
     atatccgaaa aactccagta ctatcaatgt gctgacgtga acttcaccga tgtcaacgac      2700
     atcgtagttc ccccttccgt aaagaaacag ttcagggaca tgatactgag aaacaaaaaa      2760
     gctttctcaa atgcagatga agctctccct tttaatactg ctgttgtcgc tacaatccgg      2820
     acagtagaca acgagcccgt gtattcaaga tacccgagcc tcatgggtgt ttctgacttc      2880
     ataaacaaag aggtcaaaca actattggac gatggcataa ttaggccctc caggtcgcct      2940
     tataacagcc caacatgggt ggttgataaa aaaggcactg acccatacgg taacccaaaa      3000
     aagaggttgg taattgactt caggaaattg aacgaaaaaa ccataccgga ccgttacccc      3060
     atgccgagca tccctatgat cttagcaagt ctaggaaagg caaaatactt cactaccctc      3120
     gacttaaagt ctgggtatca ccaaatctac cttgcggagc atgaccgcga aaagacttcg      3180
     ttttcagtaa gcagcggcaa gtacgagttc tgtcgcctgc cgttcggcct gcgcaatgca      3240
     agcagcatat tccaaagagc aatagacgat atcctgaggg agcacatagg gaagatttgc      3300
     tttgtctatg ttgatgacgt cataatcttt tctaaaaacg aaacggagca cgttcagcac      3360
     attaacattg tgctaaaatg tctactcgac gccaacatgc gtgtaggtcc tgaaaagact      3420
     caattcttca aagaaagcat tgaatttctg ggtttcattg taaccaaaaa tggagcaaca      3480
     tccgacccca aaaaagttaa agccattcag gaattccctg aaccaaagag tgtctacagt      3540
     gttagatcct tcttggggtt agccagctac tacagggttt ttattaaaga ctttgccgct      3600
     atagctcgtc cgatatcgga catacttaaa ggggaaaatg gttcggttag caagcacgta      3660
     tcaaagaaga tccctgttga attcaacgaa gttcaacgcg aggcattcct ccgtctgcgg      3720
     aatattttgg catcagaaga tgtcatgcta atgtatccag actttcagaa accattcgac      3780
     ttaaccacgg atgcttcggc cagtggaatt ggtgcggttc tctcccaagg caataggcca      3840
     ataacgatga tttctcgcgc tttaaaacaa gccgaacaaa actatgccac caacgaaaga      3900
     gagttgctgg ccattgtgtg ggctttaggc agactgcaga actttctgta cggctctagg      3960
     gaaattaaca ttttcacaga ccatcagccg ctcacgtttg ctgtggcaga caagaacaca      4020
     aattccaaga ttaaaagatg gaaatcttac attgatcagc acaatgccaa aatgttttat      4080
     aaaccaggca aagaaaactt ggtggcggat gccctttcaa ggcaaaacat taatgctcta      4140
     caagatgagc tccgttcgga cgctgcaacc gttcacagcg aactctccct gacctacacg      4200
     gtcaactcaa cagacaaacc attgaattgc tttaggaacc agattgtcct ggaggaatcg      4260
     cgttttccac tagagcgaaa cttgttgctg tttcgcagca aaactcgcca cctcatcagt      4320
     tacactgaca aaagcacaat tcttgataca ctcaaacaag ttgtgaattc tggagtcgta      4380
     aatgcaatac tttgcgatct ccccacgttg gcaagtttcc aacacgacct gattttactt      4440
     ttccctgcta cccagttttg gcattgcaaa aatttagtgc aggatgtaac ggacaaaaac      4500
     gaccagttag aaatcataac tgccgaacac aatcgagcgc acagagcggc tcaggaaaat      4560
     attaagcaag tactccgtaa ctactatttt cccaacatgg gcaatttagc caaagaagtg      4620
     gtggcgaact gcagggtctg cactaaagcc aagtatgata ggcacccgaa gaaacaagaa      4680
     ctcggggaaa cgcctatacc aagttatact ggtgaaatgt tgcatattga cattttcgcg      4740
     acagacaaga aacaattctt gacctgcata gacaaatttt ccaaatttgc aatcgtccaa      4800
     ccgatattgt ctagaacaat agtcgatatc acaggccctc tactacaaat tgttaacctt      4860
     ttccccgcta ccaagacaat tttttgtgat aacgaggcag cgtttaattc cgagaccatc      4920
     acttcgatgc tccggaacgc ctacggcatt tgcattgtaa atgcggcccc gcttcacagc      4980
     acctcaaacg gccaggtgga acgctttcat agcaccctga ccgaaattgc gagatgcctc      5040
     aagttagaca agaaaatcag cgacactaca gagttaatct taaaggctac gatagaatac      5100
     aacaaaagtt tgcattcagt aacccgcgag aaaccaattg aggttgttca cgcagcagcc      5160
     ggtgatcgtc gcgaaatcgt caaagacagg ctagttaaag cacagcaaga caacatcaaa      5220
     agatgcaatg catccaggca aaaccgcgtt tttgaggtag gagaaaaagt gttccagaag      5280
     aacaacaaga ggttagggaa caaattaact cccttatgct cagagcaaaa ggtcgaagca      5340
     gacctgggaa cgtctgtcct cattaagggg agggtggtcc ataaggacaa cctgaaatag      5400
     gtgttccacc acaattagct agtaagtcaa agtagagtta gaataacgtc ctacactgtt      5460
     tatccatttc aggtttgtac tcactttact tgtagtacta gcagcggtaa atgctcggat      5520
     caccgacttc tcgcatgcca actatcattc cggtcctaga cggggaagta ctggtgtacg      5580
     atcaacgtag ctacctgaga cactcaagta acatttctga atttagcagt atgatagatg      5640
     agaccgaaaa attgtccgat tccttcccac agtcgcatat gcgcaaatta ttagacgtag      5700
     atacagatca ccttagaact atgttgtccg ttcttcaagt gcatcacaga tttgcacgaa      5760
     gcctcgattt cttaggcact gccttgaagg ttgttgctgg taccccagat gcttcagatt      5820
     tcctaaaggt ccgcattaca gaggctcagt tggtggagtc taattccaaa cagatcataa      5880
     taaattcgga aactcaaaaa caaattaaca ggttaacgga cactatcaat aaaattatca      5940
     gttcccgcaa aggcgatttg gttgacactc ctcatttgtt tgaaacactg ttggcaagaa      6000
     atcgaatact taatacagaa attcaaaatt taatactcac gataacgttg gcaaaagcaa      6060
     acatagtaaa tccaacaatc cttgatcatg ccgatctgaa atcacttatt gaacaagata      6120
     ccccaatagt tagcttatta gaagcttcta agattaaggt ccttcagtcc gagaatatta      6180
     tccacatatt aatagcttac cccaaagttg aatttaagtg ccaaaaggtc tctgtctacc      6240
     ccgtctcaca tcaacaaacc attctgcgac tcgacgagga cacgctggcg gaatgcgaaa      6300
     gggatacatt tgcagttact ggttgcactg tgactacaca taacaccttc tgcgaacggg      6360
     cacggcgcga aacctgtgct agctcccttc atgcgggaaa caccgccaac tgtcacaccc      6420
     aacccagcca cctgaatgca ataatgccta tagatgacgg cgtcgtggta atcaacgaag      6480
     cgacagcgcg cgtcagaact gacgatggcg cggaagtgac cgtctcagga accttcctga      6540
     taactttcga acggtctgca gctatcaatg gcacggagtt cataaacttg cgcaaagcat      6600
     caagcaaaca acctggcacc gtgagatcac cactcctaac atcatcggac atgacccggc      6660
     actaagcata ccactcctgc atcgtatgaa cgtcgacaac ttgcagtcaa ttatggactt      6720
     caaggaggag gtaattgcgg ctggctcacc taaatattgg ttcgcagttg gtgcagtcct      6780
     gaacgtcgga ctaatttgct cattcatcct ttttatggta ctaaggagaa ggcgagcatc      6840
     attgaagata cagaaggctt tggacaactt taatatgacc gaggacggtc atcattctga      6900
     ggggggggta gttaagaact aagtacataa gttattccct tttttgtctt actttgtcta      6960
     acacacagcc ttaagcaatc tgttgccctc agcaacaaag taatattttg taaacaatgc      7020
     tgactcgcta tcaagagttc tgcgcgcagc aactgtaaac ggacaccgtg ttgcttgcgc      7080
     aagaatgctg agtcggcacg ccgactcgag cgaatggcgt gatgcattga ctttgtaggg      7140
     ctaacttaag ttcaaatatt ttctgcagcc agcagtctga agaacacagg ataaccaaac      7200
     agttgagttt tctaataaag ttcttgtgct ccggtaactc cgtgaaagat ttattattga      7260
     agttataatt gttgactaag cattagctag caacacacac aatactaaat cccatagcag      7320
     ctaacactgc ccaccgacga catccaatta cgcacctgac gtgtcatcta ctagagcctt      7380
     gccagcagag actacgcggg accggattgg attaactcat agcagctaac actgcccatc      7440
     aacaacatcc acttacgcac ctgacgtgtc atctactagt gccttgccag cagagactac      7500
     gcgggaccgg attggattaa tt                                               7522
//
ID   GYPSY_I     repbase;    DNA;    INV; 6507 BP.
XX
AC   AF033821;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   27-OCT-2020 (Rel. 25.11, Last updated, Version 3)
XX
DE   GYPSY_I is an internal portion of the GYPSY endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; env; internal portion; GYPSY_I;
KW   GYPSY_LTR; GYPSY_DM; GYPSY_I..
XX
NM   GYPSY_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1943-4733
RA   Yuki S., Ishimaru S., Inouye S. and Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes
RT   in two Drosophila retrotransposons, 412 and gypsy; a rapid
RT   detection method of reverse transcriptase genes using YXDD box
RT   probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
RN   [2]
RP   1-6507
RA   Marlor L.R., Parkhurst M.S. and Corces G.V.;
RT   "The Drosophila melanogaster gypsy transposable element encodes
RT   putative gene products homologous to retroviral proteins.";
RL   Mol. Cell. Biol 6(4), 1129-1134 (1986).
XX
RN   [3]
RP   1-6507
RA   Petropoulos J.C.;
RT   "Appendix 2: Retroviral taxonomy, protein structure, sequences,
RT   and genetic maps.";
RL   (in) Coffin,J.M. (Ed.) RETROVIRUSES: 757; Cold Spring Harbor
RL   Laboratory Press, Cold Spring Harbor, New York, NY, USA (1997).
XX
DR   GenBank; AF033821; Positions     244    6750.
XX
FH   Key           Location/Qualifiers
FT   CDS           600..1952
FT                 /product="GYPSY_I_1p"
FT                 /translation="MSWAHNYRKVKVEYESEDSWEEEQVGQALGRPLDSAT
FT                 VDITMDPNQIQALIDNAVRQALSQQQSQFQTQLNSLAARVQSLQVEAPQIK
FT                 IYEKVSVNPDVRCDIPLDIIKSVPEFSGTQDEYVAWRQSAIYAYELFKPYN
FT                 GSSAHYQAVAILRNKIRGAAGALLVSHNTVLNFDAILARLDCTYSDKTSLR
FT                 LLRQGLEMVRQGDLPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEVR
FT                 ADALHAFISGLKKALRAVVFPAQPKDLPSALALAREAEASIERSMFANSYA
FT                 KAVEERAHSGANGKSRFQGKPNKEEQGQDRNPHFTKRPKNNGQTNKDTQAQ
FT                 APQPMEVDSSSRFRQRTEHYQNHPNESNAFKRRNSSERSTGPRRQRLNNVV
FT                 QEAPKQKDPKEEYEKTAKAAVEEIDSENEYAPSDDSLNFLGGAPGCRSLND
FT                 GWLGEP"
FT   CDS           1883..4987
FT                 /product="GYPSY_I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="RLVEFFRGRSRLPFIERRLAGRTLKMLIDTDAAKNYI
FT                 RPVKELKNVMPVASPFSVSSIHGSTEIKHKCLMKVFKHISPFFLLDSLNAF
FT                 DAIIGLDLLTQAGVKLNLAEDSLEYQGIAEKLHYFSCPSVNFTDVNDIVVP
FT                 DSVKKEFKDTIIRRKKAFSTTNEALPFNTAVTATIRTVDNEPVYSRAYPTL
FT                 MGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVI
FT                 DFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDR
FT                 EKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDV
FT                 IIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDG
FT                 TKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDIL
FT                 KGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFD
FT                 LTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGK
FT                 LQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKP
FT                 GKENFVADALSRQNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRN
FT                 QIILEAARFPLKRNLVLFRSKSRHLISFTDKSWLLKTLKEVVNPDVVNAIH
FT                 CDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKNEQIEIVTAEHNRAHR
FT                 AAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPI
FT                 PSYTGEMVHIDIFSTDRKLFLTCIDKFSKYAIVQPVVSRTIVDITAPLLQI
FT                 INLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVER
FT                 FHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVHPG
FT                 AHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVKNNKRLGNKLT
FT                 PLCTEQKVQADLGTSVLIKGRVVHKDNLK"
FT   CDS           5081..6505
FT                 /product="GYPSY_I_3p"
FT                 /note="env."
FT                 /translation="MMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDL
FT                 LKHSSNLSEYASMIDETQKLSESFPHSHMRKLLEVDTDHLRTLLSVLKVHH
FT                 RIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQK
FT                 QINKLTDTINKVINARKGDLVDTPHLYEALLARNRMLSTEIQNLILTITLV
FT                 KSNIINPTILDHADLKPLVEQDTPIVSLIEASKIRVLQSENSIHILIAYPR
FT                 VKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFCER
FT                 SRRETCVRSLHAGNAAQCHTQPSHLREINPVDDGVVIINEAAAHVSTDGSP
FT                 ETLIEGTYLVTFERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGHDPVL
FT                 SIPLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYL
FT                 ALRRRRASREIQRTIDTFNMTEDGHKLEGG"
XX
SQ   Sequence 6507 BP; 2017 A; 1584 C; 1398 G; 1508 T; 0 other;
     ttggcgccca accaacaatc tgaacccacc aatctaattt aacacacttt gtcaggcgac        60
     aaacagggta gttaagttag aaaagcatgt aagttttaca agacacttct ttgacgcaat       120
     caagaaattt acgagtgaaa aaaaaaaaaa aaaaaagttg tgtatctggc cacgtaataa       180
     gtgtgcgttg aatttattcg caaaaacatt gcatattttc ggcaaagtaa aattttgttg       240
     cataccttat caaaaaataa gtgctgcata ctttttagag aaaccaaata attttttatt       300
     gcatacccgt ttttaataaa atacattgca taccctcttt taataaaaaa tattgcatac       360
     tttgacgaaa caaattttcg ttgcataccc aataaaagat tattatattg catacccgtt       420
     tttaataaaa tacattgcat accctctttt aataaaaaat attgcatacg ttgacgaaac       480
     aaattttcgt tgcataccca ataaaagatt attatattgc ataccttttc ttgccatacc       540
     atttagccga tcaattgtgc tcggcaacag tatatttgtg gtgtgccaac caacaaccaa       600
     tgagttgggc acataactac agaaaggtta aggtcgaata cgaaagcgag gatagctggg       660
     aggaggagca agtaggccaa gcattaggtc ggccgttaga tagtgccacg gtagatatta       720
     ccatggaccc caatcagatt caagctctta tcgacaatgc tgtcagacag gcattgtcgc       780
     aacagcaatc ccaatttcag acacaactca attccctagc tgcgcgggta cagagtttgc       840
     aggtggaagc accgcaaatc aagatttacg aaaaagtctc tgttaacccc gatgttaggt       900
     gcgacattcc ccttgacata ataaagtctg taccagagtt ctccggtacc caagacgagt       960
     atgtggcctg gagacaatcg gccatatacg cctacgagct cttcaaacca tacaatggca      1020
     gcagtgccca ttatcaggct gttgccatat taaggaataa aatccgtggc gcagccgggg      1080
     ctttactggt ctcccacaat acggtattga acttcgatgc tattttggcc agactagact      1140
     gcacgtactc ggacaaaaca tccttacgcc tgttgaggca aggattggaa atggttaggc      1200
     aaggagacct accactaatg caatactacg atgaagttga aaagaagcta acgcttgtca      1260
     ctaacaaaat cgtaatgacg catgaacaag agggtgctga cctgcttaac gctgaggtca      1320
     gagccgacgc cctgcatgct tttatttcgg ggctcaaaaa ggccctcaga gctgtggtct      1380
     tcccggccca accaaaagac ctgccatctg cactggcttt agctagagaa gcagaggcaa      1440
     gcatagagag aagcatgttc gctaactcct acgccaaggc cgtagaggag cgagcgcatt      1500
     cgggggcaaa cggcaagagc cgtttccagg ggaagccaaa taaagaagaa cagggacagg      1560
     acaggaatcc ccacttcacc aaacgcccca aaaataacgg acaaaccaac aaggacactc      1620
     aggcgcaagc accccagcca atggaggtcg attcatcctc caggtttagg cagcgtactg      1680
     aacattatca gaatcatcct aacgagtcga acgcgtttaa gaggagaaat tcctcagaac      1740
     gctcaacagg accgagacga caacgtctga ataacgttgt ccaagaggcc cctaaacaaa      1800
     aggaccccaa agaagagtat gaaaaaacag caaaggctgc agtcgaggaa atcgacagcg      1860
     aaaatgagta cgctcccagt gacgactcgt tgaatttttt agggggcgct cccggttgcc      1920
     gttcattgaa cgacggctgg ctgggagaac cttaaagatg ctaatcgata ccgacgcggc      1980
     aaaaaactac attaggcccg taaaggagct gaaaaatgta atgccggtcg ccagcccttt      2040
     ctcggtgagc tcaatacacg gctccaccga aatcaaacac aaatgcttga tgaaagtctt      2100
     caagcacatc tccccatttt ttcttttgga ttctctcaat gcgttcgacg ctatcatagg      2160
     cttggacctg ttaacacagg ccggggtaaa actcaacctt gcagaggact ccttagaata      2220
     ccagggcatc gctgaaaagc ttcattattt cagctgcccc agtgtaaatt tcactgatgt      2280
     aaacgatatt gttgtacctg actccgttaa aaaggagttc aaggacacaa taataaggag      2340
     gaagaaagct ttctccacaa caaatgaagc tcttcctttt aacaccgctg tcactgccac      2400
     aattcggaca gttgacaatg aaccggtgta ctcaagagcg tacccaactc ttatgggtgt      2460
     ctccgacttt gtgaacaacg aggtcaaaca actgctgaaa gacggcatta tcaggccctc      2520
     aaggtctccc tataacagcc cgacctgggt tgttgacaaa aaggggaccg acgccttcgg      2580
     gaacccaaac aagaggttgg tcattgactt caggaagcta aatgagaaaa ctattcctga      2640
     ccggtacccg atgcctagca ttcccatgat tctagcgaat ctgggcaagg caaagttctt      2700
     cactaccctt gatcttaagt cagggtatca tcaaatttac ctcgcggaac acgaccgcga      2760
     gaagacatcg ttctcggtga atggtggtaa atacgagttt tgccgtctac cgttcggctt      2820
     gagaaatgca agcagcattt ttcaaagagc cctagacgat gtgcttagag agcaaatcgg      2880
     gaagatatgt tacgtctatg tagatgacgt cataattttc tctgaaaacg agtccgacca      2940
     tgtccgccac atcgatacag tactaaaatg cctgatcgat gccaacatga gagtaagcca      3000
     ggagaaaact agattcttta aagagagtgt agaatacctc ggctttattg tcagtaagga      3060
     cggaactaaa tccgatccag agaaggtgaa ggccattcag gagtaccctg aaccagactg      3120
     cgtttacaag gttaggtcct tccttggttt agccagctac tacagagtct tcatcaaaga      3180
     ctttgctgcc atagcccgcc cgatcaccga tatcctaaaa ggggaaaatg gttcggtgag      3240
     caaacacatg tctaaaaaaa ttcctgttga gtttaatgaa actcaacgca acgcgttcca      3300
     aagactgcga aacatactag catccgagga tgtcatactc aaataccccg actttaaaaa      3360
     gccttttgac cttactacag atgcttcggc aagtggtatc ggtgcagtcc tatcccagga      3420
     gggcaggcca atcaccatga tatcgcgtac ccttaaacag cccgagcaga actacgccac      3480
     aaacgaaagg gaattgctgg cgattgtatg ggccctaggt aagttgcaga acttcctgta      3540
     tggctctagg gagattaata tatttaccga ccatcaaccc ctcactttcg ctgttgccga      3600
     caggaacacg aatgccaaga taaagaggtg gaaatcttac atagaccagc ataatgccaa      3660
     ggttttctac aaacctggca aagaaaattt cgtggcagac gccctctcta ggcagaatct      3720
     gaatgcctta caaaacgaac cccaatcaga cgctgcgacc attcacagtg agctctccct      3780
     gacctacacg gtcgagacaa cagacaaacc gttaaattgc ttcaggaacc agatcattct      3840
     ggaggcagca cgttttccgc tcaaacgaaa cctggtgctc tttcgaagca aatctcgcca      3900
     cttaatcagc tttactgata aaagttggct attaaaaaca cttaaggagg tggtaaaccc      3960
     tgacgtcgtg aacgctattc actgcgacct gcccactctg gcaagcttcc aacacgacct      4020
     cattgcccac tttccagcca cccaatttcg tcactgtaag aatgtcgtgt tagacataac      4080
     cgacaaaaac gaacagatcg aaatcgtcac tgccgagcac aaccgcgctc acagagccgc      4140
     acaagaaaac attaaacaag tccttcggga ttattacttt cccaaaatgg gcagtttagc      4200
     taaagaagta gtagctaatt gtagggtctg cacccaagca aagtatgaca ggcacccgaa      4260
     aaagcaagag ctcggggaaa cgcccatacc cagctataca ggtgagatgg tgcatattga      4320
     catattctca accgacagga agctattcct gacgtgtatt gacaaatttt ctaaatatgc      4380
     aatagtgcaa ccagtggtgt ctagaacaat agtggacatc acagcacccc tgttgcagat      4440
     cattaacctg ttccccaata tcaaaacggt ctattgtgac aatgagcccg catttaactc      4500
     agaaactgtc acctcaatgc tcaagaacag cttcggcatt gacatagtaa atgcgccccc      4560
     actccacagc tcatccaatg gccaagttga acggttccac agcacattgg cagaaatcgc      4620
     caggtgcctg aagttggaca aaaaaacgaa tgacacagta gaactaatct tgagggcgac      4680
     gatagaatat aacaaaaccg tgcactcagt tactcgtgag agaccaattg aggtggttca      4740
     cccaggggcc cacgagcgct gcctagaaat caaggcaaga ttagtaaagg ctcagcaaga      4800
     cagcatcgga agaaacaacc cttcccgaca aaaccgcgtg tttgaggtgg gagaacgcgt      4860
     gtttgtaaaa aacaacaaga ggttaggaaa taagctaact ccactatgca ccgagcaaaa      4920
     agtgcaggca gacttgggaa cgtctgttct tattaagggg agggtggtcc acaaggacaa      4980
     cctcaagtag acattccctc tacagttagg tagtaagtta tgtcaaggaa aatccgagca      5040
     ctgtagtatc accttgtctt taatttccag gttcaccctc atgatgttca tacccttggt      5100
     agtagcgaat gctcggatca ccgacttttc gcatgccaac tacattcctg tgttagatgg      5160
     ggatgtgctg gtgtttgaac agcgtgacct cttgaaacat tcgagtaacc tttccgagta      5220
     cgctagtatg atagatgaaa cacagaaact gtccgagtcc tttccccact cacatatgcg      5280
     taagttgcta gaggtcgata ctgaccatct tagaaccttg ttgtccgttc tcaaagtcca      5340
     ccataggata gctaggagtc tagatttctt aggtacagcc ttaaaggttg tggcgggtac      5400
     tcccgatgcc acggacctct ttaaaattaa gatcacagag gcccaactag tagaatctaa      5460
     ttccaggcag atagctataa actccgaaac ccagaaacag ataaataagt taactgacac      5520
     catcaataag gtgatcaatg cccgtaaagg cgacttggtt gacactccac acttatatga      5580
     agcactacta gcaagaaata ggatgctgtc tacagaaatt caaaatttaa ttctcactat      5640
     tactttggtc aaatcaaaca ttataaatcc cacaattctt gatcatgccg acttgaagcc      5700
     tcttgtagaa caggataccc caattgtcag cttaatagaa gcatctaaga tcagggtcct      5760
     ccagtccgag aatagcattc atattttaat tgcctatcct agagtcaagt tcagttgcaa      5820
     gaaagtcgcc gtctaccctg tatctcacca acacaccatc ttgcgcctcg acgaagacac      5880
     tttggccgaa tgcgaacatg acacctttgc ggtcaccgga tgcacagaca ccacacactt      5940
     cacgttctgc gagcggtctc ggcgcgaaac ttgcgtgcgc tcactccatg ctggaaacgc      6000
     tgctcaatgc cacactcaac ccagccactt gcgagaaata aaccccgtag atgatggcgt      6060
     tgtgattatc aacgaagccg cagctcacgt tagcactgat ggcagccccg aaacactgat      6120
     agagggaacc tacctggtaa ccttcgagcg aacggcaacc atcaacggct ctgaattcgt      6180
     aaatctaagg aaaacactaa gcaagcagcc aggcatcgtg cgttcaccac tacttaacat      6240
     cgtcggccac gaccctgtgc tcagtatacc tctgctacac cggatgagta acgaaaacct      6300
     acattccatc caaaacctta tggatgacgt ggaatctgaa ggctcgccca gactctggtt      6360
     cgtggctggt gtggtcctaa acttcggctt gattggctct ctcgcccttt atctggcatt      6420
     aaggagaaga cgagcctcta gggagataca gcgcaccatc gatactttca acatgaccga      6480
     ggacggtcat aaacttgagg ggggagt                                          6507
//
ID   GYPSY_LTR   repbase;    DNA;    INV; 482 BP.
XX
AC   K01952;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   GYPSY_LTR is a long terminal repeat from the GYPSY endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DMLTR3; GYPSY_I;
KW   GYPSY_LTR; LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   482-1
RA   Freund R. and Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion
RT   of the gypsy transposon.";
RL   Proc. Natl. Acad. Sci. U.S.A 81(14), 4462-4464 (1984).
XX
DR   GenBank; K01952; Positions      25     506.
XX
CC   Internal portion of GYPSY was deposited in Repbase Update as
CC   GYPSY_I.
XX
SQ   Sequence 482 BP; 142 A; 112 C; 102 G; 126 T; 0 other;
     agttaacaac taacaatgta ttgcttcgta gcaactaagt agctttgtat gaacaatgct        60
     gacgcgccca gaattgggtt caacgctcca cgcgaagaat gctggcagcg gaaagctgac       120
     acttcctacc gggagtgttg cttcacgctg caagaaatgc tgagtcggct tgccgacttg       180
     tggcggcgcg atgcattgct cgagggtaaa cttagttttc aatattgtct tctactcagt       240
     tcaaatcttg tgttgaaata aaccacagct tgctccggct cattgccgtt aaacatcatt       300
     gttcttattt acaatcaaat cgctatcgcc acaaggctag tgataataac taagggggcg       360
     aagtcaagcc ctccaaccta atctccataa acagtgtcta agacgaacct cagcgaaaga       420
     aggaagatct ctagacctac tggaaataac ataactctgg acctattgga acttatataa       480
     ct                                                                      482
//
ID   G_DM        repbase;    DNA;    INV; 4446 BP.
XX
AC   .
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   G_DM is a LINE-like retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   G LINE-like retrotransposon; G_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4446
RA   Dinocera P.P.;
RT   "G_DM.";
RL   Direct Submission to Genbank (25-FEB-1988)Dinocera P.P., EMBL,
RL   Heidelberg.
XX
RN   [2]
RP   1-4446
RA   Dinocera P.P.;
RT   "Close relationship between non-rival retroposons in Drosophila
RT   melanogaster.";
RL   Nucleic Acids Res 16, 4041-4052 (1988).
XX
RN   [3]
RP   1-4446
RA   Bao W.;
RT   "Updated with consensus.";
RL   Direct Submission to Repbase Update (06-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   [3]: updated with consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1611
FT                 /product="G_DM_1p"
FT                 /translation="MDWQAPPRPTKLTKVPRKKALKEKVKSSCSSDSSSSE
FT                 SEPGEVKRKAASRDANVAADNVPSTSAALRKKLENNSFALLSSTEDEDDDD
FT                 DNTDNEQQTPVEESAPKTMKKPNPTPKTIKPPPIYIPDVTNISALVRMITT
FT                 LVGAHKEFSYKTERNNNVRVMMPDKESYSALRQQLVTQNKRHRTFQPKDER
FT                 AYRVVIKGLHHTTDQTEIREELLKHGHTVRDLHNPIGRKSKEPLGIFFVNL
FT                 EPASNNTDIYKLKRICRSVVTVEPPLKFNDVPQCFRCQGFGHTQRYCFLEF
FT                 RCVKCGGLHDSRACEKKEDEKACCLHCQADHPASFKGCPAYKKAKAQQAPK
FT                 PKARSMESNIKPSFELPNITNGMSYRDALSGTRKSQASTPPPTPPTPPEAP
FT                 QPNHMEAMFTRFESLVERMMEKMFAQVTQLVASILNSKSCK"
FT   CDS           1605..4301
FT                 /product="G_DM_2p"
FT                 /translation="MQISLNIVFWNANGLQRSKAEVEHTIKTDNIDILLVS
FT                 ESHFCPRSHFIISGYDLITANHPSGRARGGAAMLIKSGIQFTELPAIQEDW
FT                 AQCAVARVNSLQGDITVGAVYFPPRHAITETHLHEFFESLGPRFIAAGDFN
FT                 AKHSWWGSRTNNPKGKTLHKYLMRKNLDCHSTGEPTHWPSDPSKPPDLLDI
FT                 AICKGIGRAKLVCTTYDRLVSDHSAVNLLLNIPVLRKTPLRRLTGNRTNAP
FT                 KFTFWMLSSLNPDPDLSTPGNIDAAIEKLNKEMHNAAEFANPPPPTTPRTP
FT                 ARDLHLWSPEIAALVAEKRRLRRVWFLSRNPRDKTALNRASKELKDKLTTL
FT                 RQDSFQRFLEDLEPGDPQHNLWNVTRHIKRPAKKMVPVRKADXSWCRSEAE
FT                 RAEAFADHLHSAFTPFDRCTAAEQADTIRAVESPCAPGPAIQPVAPEEIAQ
FT                 EIASLRNGKSPGPDRIDATALKMLPTFCSQLLANIFNSCFRLGYFPKQWKR
FT                 AEVITIPKPGKPEANLASYRPISLLAILSKILERVFLRRVLPVLDEAGLIP
FT                 DHQFGFRRSHGTPEQCHRLVEQILEAFERKQYCCAVMLDVKQAFDKVWHPG
FT                 LHYKIKTHLPGSHFAFLKSFTEGREFQVRCGTATSTPRPIRAGVPQGSVLG
FT                 PILYTLYTADLPITPSRSLTVATYADDTAFLASASDPQEASAIIQSQLDAL
FT                 DPWLKRWNIAVNADKSSQTTFSLRRGDCPPVTLNGETIPTSSSPKYLGLTL
FT                 DRRLTWRPHLITKRHQADLRLKQLHWLIGKRSKLRENLKLLLYKAILKPIW
FT                 TYGIQLWGTASVSNRNRIQRFQNKCLRLIADAHPYHENSVIHKELGMPWVA
FT                 EEISRFSERYAKRLDNHPNHLAINLLDNSETIRRLQRKHPLDLPHL"
XX
SQ   Sequence 4446 BP; 1250 A; 1391 C; 981 G; 822 T; 2 other;
     cactcaacga gtgcagacgt gcctacggac cgacggcaag ttattttcgt gctcaaagtc        60
     ccgctactct aaaaccgcta cgtagtgtcg cgagatttct tcgcgcaccg tgattggctc       120
     agccggcgaa ccttacggta tcgctaccac taccaacgca ctcgtgcgtg cgtgttatcg       180
     gtatcaacag ttacattcgg ctaaagttac tgcgaacaac tcagcagcag ccacgtgctg       240
     aggctggtac accaacaaac ggttcctacc gtgccctcct cccctccttc cctactccgg       300
     gacaacatgg actggcaagc ccccccgcga cccaccaagc tgaccaaagt gcctagaaag       360
     aaggcgctca aggagaaggt gaaaagcagc tgctcaagcg atagcagctc ctcggagtca       420
     gagcctgggg aagtcaagcg caaagcagcg agcagagacg ctaatgtagc cgccgacaac       480
     gtgcccagca ccagcgcagc tctgcgcaag aagctggaaa ataactcctt cgccctcctg       540
     tccagcactg aggacgaaga cgatgacgac gacaacaccg acaacgagca gcaaacccct       600
     gttgaggaat ctgctccaaa aaccatgaaa aaacccaacc cgaccccgaa gaccatcaag       660
     ccacccccga tctacatccc agacgtgacc aacatctcag cccttgtcag gatgattacg       720
     actctcgtcg gtgcccacaa ggaattctcg tacaaaactg agagaaacaa caatgtacga       780
     gtaatgatgc ctgacaagga atcctactca gcccttcgtc agcagcttgt gacccagaac       840
     aaaaggcacc gcacatttca acctaaggac gagagagcgt acagagtagt catcaaagga       900
     ctgcatcaca caaccgacca aacggagatt agagaggaac tcttgaaaca tggccatact       960
     gtcagggacc tgcacaaccc aatcggcaga aaatcaaagg aacccctggg gatcttcttt      1020
     gtaaacctgg aacctgcgag caacaataca gacatctaca aactcaagag aatctgcagg      1080
     tcggtcgtca ccgttgagcc gcctctgaaa ttcaacgatg ttccgcagtg cttcagatgt      1140
     caagggttcg gacacaccca gcgctactgc tttttagagt ttcgctgcgt caagtgtggt      1200
     ggcctccacg actccagggc gtgtgaaaaa aaggaagacg agaaagcatg ctgcctacac      1260
     tgtcaagccg accatccagc gtcgttcaaa gggtgccccg cgtataagaa ggcaaaggct      1320
     caacaagctc ctaagcccaa agcaaggagc atggaaagca acatcaagcc ctcctttgag      1380
     ctcccaaata ttacaaacgg tatgagctat agagacgcgc taagtggcac acgcaagtcc      1440
     caagcaagca ctcccccacc gacaccccca accccacctg aagccccaca acctaaccac      1500
     atggaggcta tgttcactcg atttgagagc ctggtcgaaa gaatgatgga gaagatgttt      1560
     gctcaggtga cgcagcttgt tgcttccatc ctcaacagca agtcatgcaa ataagtctca      1620
     acatagtctt ctggaacgcg aacggcttgc agagaagcaa agccgaagtt gagcacacca      1680
     tcaaaaccga caacatcgat attttattgg tctcagaatc ccatttttgc cccagatccc      1740
     acttcatcat ctccggatac gacctcatca cagccaacca cccatcaggt agagctcgag      1800
     gaggagcggc catgctcatc aaaagcggca tacagttcac tgaactgcct gcgatacagg      1860
     aggattgggc acagtgtgca gtggccagag tcaatagcct acagggagat attacggttg      1920
     gagcggttta cttccccccc aggcacgcga ttacagagac tcacctgcat gagttcttcg      1980
     agtccctcgg acctcgcttc attgcagccg gagacttcaa tgcaaagcac tcctggtggg      2040
     ggtcccgcac aaacaacccc aaaggcaaaa cgctccacaa gtacctgatg cgcaaaaact      2100
     tggactgcca ctctactgga gagcccacac actggccctc ggacccttct aagccgccgg      2160
     atctgctgga catcgcgatc tgcaaaggca taggtcgtgc caaactcgtc tgcactacat      2220
     acgacaggct cgtatcggac cacagcgccg tcaacctgct cctcaacatc cctgtcctca      2280
     ggaagacgcc gctccgtaga ctcacgggga atcgcaccaa tgcccccaag ttcacgttct      2340
     ggatgctctc ctccctaaac ccagacccag acctctccac tccaggcaac atagacgcgg      2400
     ccatcgaaaa actgaacaag gagatgcaca acgccgctga gtttgcgaac cctcctcctc      2460
     ctacgacccc gagaactccc gcaagagacc tgcatttgtg gtccccagaa atcgccgccc      2520
     tcgtggccga gaagagacgc ctcagacgag tatggttcct ctcgcgtaac cccagggaca      2580
     agacagcgct caatcgcgcc tccaaggaac tcaaggacaa actaaccacc ctacgccaag      2640
     actcgtttca acgattcctt gaagacctgg aacctggwga cccgcagcac aacctgtgga      2700
     acgtcacgcg gcacatcaaa agacccgcca agaaaatggt accagtgcgt aaagcagack      2760
     gctcctggtg tcggtctgag gcagaaagag ccgaagcttt tgctgaccac cttcactctg      2820
     ccttcactcc gtttgaccga tgcacagctg cagagcaagc tgacaccatc agagctgttg      2880
     aaagcccatg tgctccagga cctgcaattc agcccgtcgc accagaggag atcgcgcagg      2940
     aaattgcctc gctcagaaac ggcaagtctc ccggccctga tcgcatcgac gctactgcgt      3000
     taaaaatgtt gcccacattc tgctcacagc tgcttgccaa catttttaac agctgcttcc      3060
     ggctagggta tttcccaaaa caatggaaac gcgccgaagt gattaccatc cccaagcccg      3120
     gcaaacctga agccaatctt gcctcctatc gtccgataag tctgctggca atcctctcca      3180
     aaatactcga aagagtattt ctgcgcagag tgctgccagt actggatgag gctggtttga      3240
     tccccgatca ccagtttggc ttcaggcgct cccacggaac accagagcaa tgccaccggc      3300
     ttgtagagca aattttggag gccttcgaaa ggaagcaata ctgctgcgcc gtcatgctgg      3360
     atgtgaagca ggccttcgac aaagtctggc accctggact ccactataaa atcaagactc      3420
     accttcccgg atcccacttc gccttcctca aatcattcac tgagggtaga gagttccaag      3480
     ttcgctgcgg aacagcgacc agcacgccta ggccgataag agccggagta ccccaaggca      3540
     gcgtccttgg accaatactg tacacactct acacagcaga ccttcctatc acaccctccc      3600
     ggagcctaac agtggccaca tatgccgatg acaccgcctt cctagcctcc gcctcagacc      3660
     cccaagaagc atcagccatc attcaaagcc agctggatgc cctcgaccca tggttgaaac      3720
     gatggaacat tgccgtgaac gcagacaaat cctcccaaac cactttctcc ctgcgcagag      3780
     gagactgccc cccagtcacg ctcaacgggg aaactattcc aacctcaagc tccccgaaat      3840
     accttggatt gactctagac cggaggctca cttggcgccc ccacctaatc accaaacgac      3900
     accaggctga cctgcgcctc aagcaactcc actggctcat cgggaaaagg tccaaactta      3960
     gggaaaacct aaaactcctc ctgtacaagg ccatcctgaa gccaatttgg acttatggga      4020
     ttcagctgtg gggcactgcc agcgtctcaa accgcaaccg catacagcgc ttccagaaca      4080
     agtgcctgag gctaatcgct gacgctcacc cataccatga aaactccgtt atccacaagg      4140
     agcttggaat gccatgggta gcagaggaga tctcccgctt cagcgagaga tacgctaaac      4200
     gactggacaa ccaccctaac catctggcta ttaacctcct ggacaacagt gaaaccatca      4260
     gacgcctcca gaggaaacac ccgcttgatc tcccccacct ataacccaca acaatgaacc      4320
     cccgaccaat ctacaacttt gtaatccctt aagttaatgc cccccccacc caaacattta      4380
     attattgtcc acatggacag attttaaatt aataaataga tcgctaaaaa aaaaaaaaaa      4440
     aaaaaa                                                                 4446
//
ID   HACR1-1_AAe repbase;    DNA;    INV; 1238 BP.
XX
AC   .
XX
DT   25-APR-2019 (Rel. 26.01, Created)
DT   25-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A CR1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ORF1; Half;
KW   HACR1-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1238
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1238
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 516-516 (2021).
XX
DR   [2] (Consensus)
XX
CC   Half CR1 retrotranspsoson, containg only ORF1. Sequences are >97%
CC   identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           234..971
FT                 /product="HACR1-1_AAe_1p"
FT                 /translation="MLCKKCTHSIDMKTECFTVCEGNCSGAYHAHCVGLSE
FT                 AAVSVIKKNIIWLCDICLESFHAERFQELIECKQDAEHSGPKVEIIKEINE
FT                 LKIQISNITTMLSGYSRRSTLEESLPLQQVSTPLSSPDALNEVLRESSANH
FT                 TNEGIACTSTERQHSFSLLLSNVNSCVTEQDIDSLVSKSLGITDIDNRTVT
FT                 KLVPKWKPCEELDYISFKVVLDEKWKTAALRSSTWPPTIKFREFINRQRCT
FT                 WYPSS"
XX
SQ   Sequence 1238 BP; 384 A; 215 C; 249 G; 390 T; 0 other;
     agtattgtct ctgcaagaag ctagttgtcg tttcaccgcg ctccgttttt ttaagttgga        60
     ttcaatttgt ttgcgaacgt tgaaaatagt aaattacgtc gtagtatcct tttaactcta       120
     ccaggagtca atatctatca cagttgttgt caacggtatc atttgcgctg gaaagcagta       180
     atttttatga taaaactcga cgtttgagaa ctcaaaactc catcgctgtg aagatgcttt       240
     gtaaaaagtg cactcattct attgacatga agacggaatg cttcactgtg tgcgaaggaa       300
     actgtagcgg agcttatcat gctcattgtg ttggactctc tgaagctgct gtgagtgtga       360
     taaaaaagaa catcatatgg ctttgcgata tctgtttaga atcgtttcat gccgaacgct       420
     tccaagagct gatcgaatgt aaacaagacg cagagcacag tggtccaaaa gtggaaataa       480
     taaaagaaat taatgaatta aagattcaaa tttccaacat cactacaatg ttgtcaggat       540
     actcgcgacg ttcaacatta gaggaatcat taccattgca acaagtttca acaccgttat       600
     catctccgga cgctctgaac gaagtattgc gagaaagttc tgctaatcat acgaatgaag       660
     gaatagcatg caccagtacg gaacgacaac attctttttc gctgctttta tcgaatgtga       720
     atagttgtgt gacggaacaa gatatcgatt cgttggtatc gaaatcgctt ggaattacgg       780
     atatagacaa caggaccgtt actaagctcg tgccgaaatg gaaaccatgt gaagaattgg       840
     actacatctc cttcaaagtg gttctcgatg agaaatggaa aacagccgca ttgagatcgt       900
     ctacttggcc accgactata aaattcaggg aatttatcaa tcgccaaaga tgtacttggt       960
     atccgtctag ttgatcaagt ctcactgaaa ttatatgctc gttgttagtg ttttgtgttt      1020
     gaagttgtta gttttaaagt gcttaaattc gaaatttact ggtttgtttt atctgtatgt      1080
     ttaaaaaatt tttgttgccg tattattact gtcttattgc cgtctttatt actgtaatat      1140
     tgtcaaaatg cttattgttt accctagttt taagaacaca tcattggggc agaatcaagc      1200
     ctgttgatga acaaataaat aaataaataa ataaataa                              1238
//
ID   HAL1-1_AAe  repbase;    DNA;    INV; 1079 BP.
XX
AC   .
XX
DT   07-DEC-2018 (Rel. 26.01, Created)
DT   07-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Half L1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   HAL1-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1079
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1079
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 517-517 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..974
FT                 /product="HAL1-1_AAe_1p"
FT                 /translation="MSSYRKNTLVVDFSVLPKRPPTDQVEEFLRDFVKLDM
FT                 ADVRNLQLHTLRNCVYIEMHNAGLPPRLAKQHHLRYWLEHNGAVYHIPIYV
FT                 DGPTTTIRIHDLSPQMANTTITEYLKEYGTVVSITNEVWKNYFAGVPNGVR
FT                 VVRMKMKKPVPSHITIDNQPSLVTYPKNEKQKTASVHEKKDEQQQTSSSAV
FT                 INHAKPDNPTTTIAHDMNDDDEDDDDDDSSIDDSTTNDDHQTTTKRRLSTR
FT                 TSSDENDQTHRERKGPEIAKDEEGKDPCVPAESGWRVTRSRKCKRMETSVE
FT                 IGRIMN"
XX
SQ   Sequence 1079 BP; 367 A; 252 C; 240 G; 220 T; 0 other;
     cagttgacag ttgcctttcg tgcgcgaacg acgtcttttt catagcacaa gcctctcgcg        60
     actactgagt gaaacacaag atgtcttcgt acaggaagaa cactcttgta gtggatttca       120
     gcgtcttgcc gaaacgtccc ccaacggatc aggtggagga gttcctccgg gatttcgtta       180
     agctcgatat ggccgatgta cggaacctcc agctgcacac tctgcgaaat tgtgtataca       240
     ttgaaatgca caacgctggt ttaccccctc gcctagcaaa gcagcaccat ctacgatatt       300
     ggctcgagca taacggagct gtctaccaca tcccaattta cgtggatgga cctactacca       360
     ccatcaggat acacgactta tccccgcaga tggcaaatac tactatcacc gaatatctga       420
     aggagtacgg cacagttgtc tccatcacca acgaagtgtg gaagaactat tttgccggag       480
     taccgaacgg ggtaagagtg gtacgcatga agatgaagaa gccggtgccg tcgcatatta       540
     caatcgacaa ccaaccgtcc ctcgttacgt acccaaaaaa cgagaaacaa aaaacagcat       600
     ctgtacacga gaaaaaagat gagcaacagc aaacgtccag ctcggctgtt atcaaccacg       660
     cgaagcccga taacccaaca acaacaatag cacatgacat gaacgatgat gacgaagacg       720
     acgacgacga cgatagttcg atcgatgata gtacgaccaa cgatgaccat caaactacca       780
     cgaagcggcg actgtcaact cgaacatcta gcgacgaaaa tgatcaaaca caccgtgagc       840
     gtaagggtcc ggagatagca aaagatgaag aaggaaaaga tccatgcgta ccagcggaat       900
     cgggatggag agttacccga tctagaaagt gtaagagaat ggaaacttct gttgaaatag       960
     gtagaataat gaattaacaa attgtatttt ttatcgttag ttctgttgaa tttcaaaacg      1020
     acacgaatgc accttaaagg tgtaaagtgt cgaaaataaa aaaaaaaaaa aaaaaaaaa       1079
//
ID   HAL1-2_AAe  repbase;    DNA;    INV; 1091 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 26.01, Created)
DT   26-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Half L1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   HAL1-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1091
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1091
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 518-518 (2021).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..1017
FT                 /product="HAL1-2_AAe_1p"
FT                 /translation="MCSARNNTLVVDFSVLPVRPDVANVQQFLENEIKLQL
FT                 TDLKSIQLHHTRNCVLIEMKSKEIVARYQLEHNWKRTMLCGNTKFRIPVYI
FT                 DCDAVTVRIHDLPPSMSQVTIADHMMKYGEVISIRSEKWKHYFPGISNGVR
FT                 VLRMNLLREIPSFITIENEPTMVSYVGQPKSCQRCSEPSHPGRKCADSSAA
FT                 PAHKSLQTSTASKSSNNLFNQEDFPPINNNRQTSPSPDPTEAKQQNDDDND
FT                 DDWTDDDNGSNSSTEHNEATNKRRRSRRVNGKSATKKACSDQCSPNTDHTE
FT                 LKQSLSNNKLVKGLNFSISNRN"
XX
SQ   Sequence 1091 BP; 351 A; 252 C; 232 G; 256 T; 0 other;
     cagttcccag ccaaactttg cacgcgtcgg acgtacttct ttgcctttct cgctttcgtt        60
     tgcagtttgt ggaaaatgtg cagtgcgcga aataacactc tagtggtgga cttcagtgtt       120
     ctccccgttc gccctgatgt ggcaaatgtg cagcaatttt tggagaatga aataaagctc       180
     cagcttactg atcttaagag catacagttg catcacacgc gcaactgtgt gctcatcgaa       240
     atgaaatcaa aagaaattgt cgctcggtac caattagagc ataattggaa gcgaacaatg       300
     ctgtgtggta acacgaaatt tcgaattccg gtttacatcg attgtgacgc agtgacggtc       360
     cgaatccacg acctcccacc gtcgatgagt caagttacaa tcgctgacca catgatgaag       420
     tatggagagg taatctccat tagaagtgag aagtggaagc actactttcc cggaatttca       480
     aacggagtgc gagtactcag gatgaattta cttcgagaaa ttccatcgtt catcaccata       540
     gaaaatgaac ctactatggt ctcttatgtc ggccagccca aatcatgcca acgatgctcc       600
     gaaccatctc atcctggcag aaagtgtgca gattcaagcg ctgcacctgc tcataaatca       660
     ctgcaaacat cgacagcatc aaaatcgtcc aacaacttgt tcaatcagga ggattttcct       720
     cccataaaca acaaccggca aacatcacca tctcctgacc caactgaagc gaaacaacaa       780
     aacgacgacg acaatgacga cgactggact gatgatgaca atggatcaaa ctcatccaca       840
     gaacacaatg aggctacaaa taagcgacgg cgatcgaggc gggtcaacgg gaagagtgca       900
     acaaaaaagg cttgctctga ccagtgttcc ccaaacacgg atcatacgga acttaaacag       960
     agtttatcga ataataaact tgtaaagggt ttgaattttt ctattagtaa tagaaactga      1020
     gaatcggctc tgtgatgctg gatacggcgt gtgagccttc taataaatga aacagtaaaa      1080
     aaaaaaaaaa a                                                           1091
//
ID   HAL1-3_AAe  repbase;    DNA;    INV; 1121 BP.
XX
AC   .
XX
DT   26-APR-2019 (Rel. 26.01, Created)
DT   26-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Half L1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   HAL1-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1121
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1121
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 519-519 (2021).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..1047
FT                 /product="HAL1-3_AAe_1p"
FT                 /translation="MNCVRKNTLVVDFSVLPVRPDVAKVEQFLENAIKLNL
FT                 ADVKCIQLHNTRNCVYIQMKDHDTALQYENTHNIKRVFMCNDKPFKIPVYV
FT                 DSEAVTVRVCDLPPSMLHATVGEHMMRYGDVISIQNERWKNYFPGIYNGVR
FT                 VLQMRLKQSIPSFITINNEIATVRHPNQIMTCRWCSKPAHPGQKCLEENAS
FT                 KNISISLTPTTSSSNEHKFSDADFPPINNKQSTEPSTKSVPPRDKRAPVEN
FT                 EPCTKIVPTDQEQQLNSINNDDDDDDDVNDDSSSSPYECGDSTYKRRLSTK
FT                 RGKEKKKLCAIQGLQGDCDSNTSVNINKKK"
XX
SQ   Sequence 1121 BP; 362 A; 259 C; 232 G; 268 T; 0 other;
     cagttgacag cctttgctct tagcctacgg acgtgtttgc tattcgctct tgtgcttcgt        60
     acgttttgct ccggcggtaa aatgaattgt gttcgaaaaa acactctagt agtagatttt       120
     agcgttctac cagtgcgacc tgatgtcgca aaagtcgagc aatttctgga gaacgcaatc       180
     aagctaaatc tcgcggatgt taagtgtatt caattacaca atacccgcaa ttgtgtttac       240
     atccagatga aggatcacga cactgcattg caatatgaaa acacacacaa cattaaacgt       300
     gtttttatgt gcaatgataa gccgttcaag atccccgttt atgtagatag tgaggcggta       360
     acagttcgtg tgtgtgattt acctccttcc atgctccacg caacagtcgg ggaacacatg       420
     atgaggtatg gcgatgtcat ctccatccag aacgagcgat ggaagaacta ctttcctggc       480
     atttacaacg gtgtgcgagt gctacagatg aggctgaagc aatccattcc gtcgttcata       540
     acgatcaaca acgaaattgc tactgttcgc catcctaacc aaattatgac gtgtaggtgg       600
     tgctccaaac ctgcgcatcc tggacaaaaa tgtttagaag aaaatgcttc taaaaacata       660
     agcatttcat taaccccaac cacatcatcg tcaaacgaac ataaattcag cgacgctgat       720
     tttcccccaa tcaacaacaa acaatcgacc gagccatcta ccaaatcagt accacctaga       780
     gacaaacgag cgcctgttga aaacgaacct tgcacaaaaa tcgtacctac ggaccaagaa       840
     cagcagttga actcgatcaa caatgacgac gacgacgacg atgatgtgaa cgacgacagt       900
     tcatcctctc catacgagtg cggcgatagt acctacaagc ggaggctgtc aactaagcga       960
     gggaaggaga agaaaaaact ttgtgctatt cagggattgc agggtgactg cgattccaat      1020
     acctctgtaa atattaacaa aaaaaaataa gctattcggc cccgtaaagc ctacgtgcgt      1080
     ttgggcctgc caaataaata gaattgaaaa aaaaaaaaaa a                          1121
//
ID   HalFs1      repbase;    DNA;    INV; 3630 BP.
XX
AC   .
XX
DT   11-SEP-2012 (Rel. 17.12, Created)
DT   11-SEP-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   HalFs1 non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like domain; HalFs1.
XX
OS   Forficula scudderi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dermaptera; Forficulina;
OC   Forficuloidea; Forficulidae; Forficula.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   [1] (Consensus)
XX
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..519
FT                 /product="HalFs1_1p"
FT                 /translation="KEAICKAYNNKAKLKDIRVNAPKLSLHNNMTSIVNLP
FT                 RVLADELTKKKKIRIGWMRCRVHNIYTPKKCYKCQNFGHMSYECEGNNEQM
FT                 KGKCLKCCQAGHVAKECRNTPMCYKCGVEGHQASSMMCPVYRSLVAALKDE
FT                 NKKKKTIKKSLENKEQQEKNASKLKGNGNKSNSN"
FT   CDS           643..1212
FT                 /product="HalFs1_2p"
FT                 /note="endonuclease."
FT                 /translation="MLMIRETLQFIYICNNKLQISKVLTGKGFVGIYLKEF
FT                 SIFSCYISLNSEDNEYSEYLESLTRACGRRSTKQLIAGDFNAWSPEWGSPS
FT                 WNRRGEHLSDKIAELGLIVLNDGDRPTFSTKGGRSFIDITLATEDMVPKVR
FT                 KWEVLEEMSGSDHNYIEYDIDIEDVVCLQPPKKKQMKPRKTRQSKTYLIDA
FT                 "
FT   CDS           1208..3442
FT                 /product="HalFs1_3p"
FT                 /note="reverse transcriptase."
FT                 /translation="MLEDSLIQDLSSAETFMKALTKACNKAMPKINRRDNR
FT                 KQAYWWSVKIAEARKACCTAKRIVNRLNRRNAEDTTQEWTNYRNSRKRLNA
FT                 LIKTSKSEHWQKIIEEVNNDPWGQAYQIVMRYIKGKSARESLCMETLKDIA
FT                 GELFPQRPTEKWKMPQIKEIQPFSEKEISIAGGKLKSGRAPGPDGVPAEVL
FT                 KIISREEPGILADMYNNLFRKSEFPGGWKAAKLVLVPKPGKPGGKANSYRP
FT                 LCMLSAAGKLLEHLILERLKVDLESKEGLSENQFGFRGGRSTVDAIKKVID
FT                 IADEANRGKTKRSRRLCALILLDVQNAFNSANWRMIMTELVKREIRPEILN
FT                 MLASYLSNRSLNIEDSEGEVYGMDVTCGVPQGSVLGPTLWNVLYDGLLQID
FT                 TREGVTLIAYADDLAIVVVAKNEEEIMSKGNATIRDIDKWMTENDLKLVPS
FT                 KTETIMLTGRKRVKNVTFTIRGKTIQTKKEVKYLGIMLDSRLSFGPHLVCS
FT                 MEKAIKSITALARLMPGMGGPKMRKRKLLSSTIDSILLYGAPIWGGVLAYD
FT                 RWRRRLGSEQRRMALRIICGYRTILREACMVLSGCIPIELLAEERVICYTN
FT                 KSDTAGKTIERKNAIRKWQEKWEASENGSWTKRLIGQVEPWFNRIHGELDF
FT                 FTTQALSGHGCFGTYLYRMKIKDRPTCIYGKEEDTPARTLFLCERWTELRN
FT                 KLVQKTGTTIEESSLTRVMLTSQQFWNSTSEFIRAVLEQKSFDYR"
XX
SQ   Sequence 3630 BP; 1266 A; 669 C; 906 G; 789 T; 0 other;
     aaggaagcaa tatgcaaggc atacaacaac aaggccaagc tgaaagatat tagagtgaat        60
     gcgcctaagc tatcactaca taataatatg acatctatag taaacctacc tcgggtttta       120
     gcagatgagc tgactaaaaa aaagaaaatc aggatagggt ggatgagatg cagagtacat       180
     aacatatata caccaaaaaa atgctataag tgtcaaaact ttggccacat gagctatgag       240
     tgcgagggaa ataatgaaca gatgaaaggt aaatgcttga aatgctgtca agcaggacat       300
     gtagccaagg aatgcagaaa caccccaatg tgctacaaat gcggagtgga gggtcatcaa       360
     gcctcatcaa tgatgtgtcc ggtctataga agcctcgttg cggcgttgaa agacgagaat       420
     aaaaaaaaaa aaaccattaa gaaaagccta gaaaacaaag aacagcagga gaagaatgca       480
     agcaaactaa aaggaaatgg caataaaagt aattcaaatt aatctaaact tcactgccaa       540
     acttagcaca tgatctactg atggatatag tgtctaggaa aaaaatagat atggtaatcg       600
     taagcgaacc tggcctgaca agaacgtgtg ggccgggatg gtatgttgat gataagagag       660
     acgctgcaat ttatatatat atgcaacaat aaattacaaa taagtaaagt gttaacaggg       720
     aaaggttttg tgggcatata ccttaaagaa tttagcatat ttagctgcta tatctccctc       780
     aatagtgagg ataatgagta tagcgaatat ctggaatcgt taacaagagc ttgcggacga       840
     cggagtacaa aacagctaat agcgggcgac tttaacgcat ggtctccaga gtggggttct       900
     ccctcatgga atcgaagggg ggagcacctc tcggataaaa tcgcggaact cggtctgata       960
     gtactaaatg atggagatag gccgacattc tcgaccaaag gggggagatc tttcattgat      1020
     atcacgctgg ctactgaaga catggtccct aaagtaagaa agtgggaagt gctagaagag      1080
     atgagcggca gtgatcacaa ctatattgaa tacgacattg acatcgaaga cgtggtatgt      1140
     ctccaaccac ccaaaaaaaa acaaatgaaa ccccggaaaa ctagacaaag caaaacttat      1200
     ctcatcgatg cttgaagatt cattaataca agatctgagt agtgctgaga cttttatgaa      1260
     agctttaaca aaagcatgta ataaagcaat gccaaagata aacaggaggg ataataggaa      1320
     acaggcttat tggtggtcgg ttaaaatagc agaggcgaga aaggcctgct gcactgccaa      1380
     aagaattgtt aatagactta accgcaggaa tgcagaggac actacccagg aatggactaa      1440
     ttacagaaat tctcgtaaga ggctgaacgc gctgattaag acttctaaaa gcgaacactg      1500
     gcaaaaaatc attgaagaag taaataatga tccctggggg caggcatacc agattgtcat      1560
     gcgttatata aaaggaaagt ctgctagaga aagcctgtgt atggaaacac ttaaagatat      1620
     tgcaggagaa ctcttcccac aacgcccgac tgagaagtgg aaaatgcctc agataaaaga      1680
     aatacagcct ttctctgaga aagaaatctc cattgctgga ggcaagctga aaagtggacg      1740
     tgcccctgga ccagacggag tcccagcaga agtgttgaag ataataagcc gagaagaacc      1800
     tggcatttta gcagatatgt acaataacct atttagaaaa agcgagtttc caggaggatg      1860
     gaaggcagca aaactcgtct tggtgcctaa accgggaaaa cccgggggaa aggcaaactc      1920
     ttaccggcca ttatgcatgc taagcgcggc tgggaagctg ttggaacact tgatcctaga      1980
     acgccttaaa gtagatctgg aaagcaaaga aggactatct gagaaccaat ttggttttag      2040
     gggtggaaga tcgaccgttg atgccatcaa aaaagtgata gatattgctg atgaggcgaa      2100
     cagaggaaaa acaaaaagga gtagaagact atgcgccctc atattgctag atgtccaaaa      2160
     tgcattcaac tctgctaact ggagaatgat aatgactgaa ctggtcaagc gagaaataag      2220
     accagaaatt cttaatatgt tggccagtta cctgtcaaat cgcagtttga acatagaaga      2280
     ctcggagggg gaggtatacg gtatggacgt gacgtgcgga gtaccacagg gatctgtact      2340
     gggtccaacc ttgtggaatg tgttatatga cgggcttctg cagattgata cccgggaagg      2400
     agtgacactc atagcatatg cagacgacct ggcgatagtg gtggttgcca aaaacgaaga      2460
     ggaaataatg agcaagggga atgcaactat ccgtgatatc gataaatgga tgacggaaaa      2520
     cgatctgaag cttgtcccgt caaaaactga aacaataatg ctaacgggcc gcaaaagagt      2580
     aaaaaatgtc acatttacta tccgtggcaa gacaattcag accaaaaaag aggtcaaata      2640
     tctgggtatc atgctggaca gtagactctc ctttggtcca cacttggtat gctcaatgga      2700
     aaaagcaatc aagtcaatta ctgcacttgc aaggcttatg ccagggatgg gaggtccaaa      2760
     aatgagaaaa agaaagcttc tctcgagtac catcgactcc attctgttgt acggggctcc      2820
     gatttggggc ggggtcttgg catacgatag atggagaagg aggctgggta gtgagcagcg      2880
     gaggatggct ctgcggatta tatgtggata ccgtaccatc ttgagggagg catgtatggt      2940
     cctgtctggg tgtatcccga tagagctgct tgcggaggaa agagtgatat gctacacaaa      3000
     taaaagcgac actgcgggaa aaacaattga aaggaaaaac gcgatcagaa aatggcaaga      3060
     aaaatgggaa gcgtcagaaa atggatcctg gaccaagaga ctcattgggc aagtagaacc      3120
     ctggtttaat agaatccatg gggaattaga tttcttcacc actcaggcgc tgtcagggca      3180
     cggatgtttc ggaacctatc tttacagaat gaagattaag gataggccaa cgtgcattta      3240
     cggtaaagag gaggacaccc ccgcacgtac actttttttg tgcgaacgct ggactgaact      3300
     gaggaataaa ctggtccaaa aaacagggac gactatagag gaaagctcac tgaccagagt      3360
     catgctgacc tcacaacaat tttggaacag caccagtgag ttcatacgag cagtcctgga      3420
     gcaaaagtca ttcgactatc gatgaccttc cgactgagat atagaaatca cgtccagagg      3480
     taatgctgac gcggttcctg gtcgtctatt tctctatcat tgttgctatc attaaagaac      3540
     tgaagcagag gaatgggggt ttagtaagta tgctgaaaag agagagagtc ccacactcag      3600
     gctataaaag cttccccaac cctctataaa                                       3630
//
ID   HARB-1_AP   repbase;    DNA;    INV; 2390 BP.
XX
AC   .
XX
DT   31-JUL-2009 (Rel. 14.07, Created)
DT   31-JUL-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; HARB-1_AP.
XX
NM   HARB-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2390
RA   Jurka J. and Baney O.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1349-1349 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..684
FT                 /product="HARB-1_AP_1p"
FT                 /translation="PNCLGAIDGKHXRCKNPXNSGSXFFNYKKYFSXVXMA
FT                 VVDANLNFIXIDVGAYGREGDSNVFKECPFGKKLYAEXLNLPEPXXLPNTN
FT                 NXPQPXVFVGDEAFALHTNLLRPYPGRGLNDXRRVFNYRLSRARRTVECAF
FT                 GVLANKWRVLHTPIXVEPDFADXIVKACCXLHNFVRKRDGINFEDTEANXL
FT                 DDIEARGAGARSQGIXVRDYFAXYFMGPGAVPFQYKVL"
XX
SQ   Sequence 2390 BP; 753 A; 387 C; 387 G; 757 T; 106 other;
     ccgaattgtc tnggngcnat tgacggnaaa catatncgat gtaaaaatcc naanaattcn        60
     ggntcattnt ttttcaatta caaaaagtat ttttctatng tattnatggc tgtagtcgac       120
     gcaaatttaa attttattnc natcgatgtc ggngcntacg gtcgagaagg ngattcnaat       180
     gtntttaaag aatgtccatt cggaaaaaaa ttatatgccg aanaacttaa tcttccggaa       240
     ccaantnntt taccaaatac aaacaacanc ccacagccnt ncgtttttgt tggngacgaa       300
     gcnttcgcnc tacatacaaa tttattaaga ccgtatccgg gacgtggnct caacgatann       360
     cgacgngtat ttaactatag gttgtcnaga gcaaggcgna cggtcgaatg tgcnttcgga       420
     gtactngcna ataaatggcg ngtnttacat acnccnatac nagtngaacc cgatttcgcn       480
     gacgnnatcg tnaaagcntg ttgtatncta cacaattttg tncgnaaaag agacggnatc       540
     aattttgaag atactgaagc caatancttg gatgatattg aagctcgcgg agcaggagct       600
     cgttcncaag gnattgangt nagagattac tttgccgant attttatggg cccnggagcn       660
     gtaccttttc agtacaaagt actttaattt atttacttaa ttataatttg taantantac       720
     ttattttttt tttatataaa acattataat attttttatt tgtatttata tttagatttn       780
     tgtaccgaaa ttattatact aaatatttta atatnattat tataataatt aaataatata       840
     taacgtaata tatatctact tacctttatt ttctttttcn gtatttgatt tttcagtcca       900
     atctncatac atgctttccc cgatattaag ccaacttttt tntttnacga actttgtcca       960
     tgtattcttt tgancccatt tcccaaatag acgggttatt ttgaatacac gatatgaatt      1020
     tatcggtatc gaaaaccatt ttaaaataaa atgtttcaat gtttataaat atntaaaaat      1080
     aaataattaa ttcaaattaa taatttaaca aaaatatata aaattaaaat attcaaaaaa      1140
     cgcagcggcc aaaacgcaca gtgtggcaca cgcgatttgg cgggaancaa cccggcggga      1200
     agtatnanca aaacgcatta tttcgtatcg tgcgtgccgc actgtgcgtt tcggccgctg      1260
     cgttttttag antattttaa ttttatatat ttttaaaata tttaaanaaa aaatggtttt      1320
     tgataccgat ggnttctgat accataaatt attatcgtgt attcaaagta acccgtctat      1380
     ttgggaaatg ggtactaaag aatacatgga taagttcgtg aagcaaaaaa gttggntcaa      1440
     tatcggggaa agcatgtatg cagaattgga cagaaaaanc ggaacctgaa aaagaaaata      1500
     caggtaagta gaatattatg ttatatattt ttaaattttc agcatagtat ttacaatatt      1560
     attagtaatt atttttaatt tctattgggt atacgacttt taatctctat caaatacaaa      1620
     aaaaaagact aaatctatta cattttaatt tattattant aatttacaaa taataaagta      1680
     ataagatctt tttaaataag cagcttataa tactttatac tgaaaatcta cggcnccngg      1740
     gcccataaaa tagtcggcga agtaatccct cacntcaacg ccttccgaac gagctcctgt      1800
     tccgcgagct tcnatgtcat ccaggctatg ggtttcagca tcttcaaaat taattccgtc      1860
     tctcttacgg acaaaattat gtaanataca acacgctttg acgatancgt cagcgaaatc      1920
     gggttccact tgtatnggag tatgtaacac acgccattta ttngcgagna ctccgaangc      1980
     gcattcgacc gtncgccttg ctctngacaa tcnatagtta aatacncgtc gagtatcggt      2040
     naggttacgt cccggatacg gtcttaataa atttgtatgt agagcgaaag cttcgtcccc      2100
     aacaaaaacg nanggctgtg gattgttgtt tgtgtttggt aaaagatttg gttccggaag      2160
     attnagtttt tcggcatata anattttacc gaatggacat tctttaaana cattggaatc      2220
     cccttctcta ccgtaagacc cgacatcgat tgnaataaan tgtaaatttg cgtcgactac      2280
     agccatnaat accatagaaa aaactttttg taattgaaaa acaatgatcc ngaattgtta      2340
     ggatttttac atcgnatatg tttnccgtca atagcgccta ggcaattcgg                 2390
//
ID   HARB-1_CiLe repbase;    DNA;    INV; 3142 BP.
XX
AC   .
XX
DT   14-NOV-2019 (Rel. 25.01, Created)
DT   14-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   DNA transposon from the bed bug genome - consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; HARB-1_CiLe.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-3142
RA   Kojima K.K.;
RT   "DNA transposons from the bed bug genome.";
RL   Repbase Reports 20(1), 47-47 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Likely TTAA TSDs. 35-bp TIRs.
XX
SQ   Sequence 3142 BP; 903 A; 571 C; 696 G; 964 T; 8 other;
     ggatgattca cgctataccg tgtcggggcc gagcccgggt ctcaaccgag ccatagcgtc        60
     cgagtggagt ccgagccttt atgcatgctg ttccgtagta gttccgtgcg aaccgtggct       120
     gagtgttggt gagtgggtaa caagcaaaat gcaattttca gaacttgaac tagcagcaat       180
     tgccgttgca cttgatgaag aagaaaggga aaaccatgtt gatcgacttc acacagcaaa       240
     gaggagatgg ggcgtgcatc ctacttggcg aaagcgaaag ttggagggag aatttgccac       300
     actatacaaa gagttgttag atgacgaaag taaattcttt ggctattttc gaatgtcctg       360
     ggagtgtttc aacgttttac ttctaaaagt gaaaagtggc ctcacgaaac agaagacatt       420
     ctttcaggag cccatttcgc catctgagcg actagcagtg tgtctcaggt aagtcaataa       480
     taatatagac aaccggatca gaatagataa gaataaataa taattaccga cttaaaatat       540
     gtatttaaaa caaaagtaac atacttacaa atttcacatg tatttgaaac gtgtacaaat       600
     attctatagt cttaataatg ctttaatagt catgttcatt gaactgagaa aaaaaagtgc       660
     tcatctcatt ttttgctggt tgttgtggta gagcaggcga gtgatttgga tgtgcgtcgg       720
     gtgttgtagt ccagtttgga ttcgggtgga ttggtggagc agttgatgtg gaactggtgg       780
     atgattcatc tgctggggat gtctgcattt gtgcgtactc tagatcctgc actattgaaa       840
     aaattcttcc ttttgctaaa tgctggtagt atggagaaaa cgtttttatt gtcggtatta       900
     aaccttggaa aaatgcgtca atagggtgag cgtcagtttg agacttttct tttttttcaa       960
     taatatatct cattaaggta ttcgatgcac tttccgttgg atattgcagt ggtgcttgtg      1020
     acattctgcg agtgtagcgg acttgatgat gttttcgagt aggtcttgaa gttgatactg      1080
     gtcgtgatag agatgatggg caaccatcaa gtggttgtga caacggaaga ggtgtggaag      1140
     gttgtggttc caatggtacg tcgtttggct gcacattttg tgaagaactg cctggaagtt      1200
     ccatactgtc attggcatca ttttcttcat ttatctccgc ttggttgttt gtatttcccg      1260
     attcaggttg tcatcttcaa tattggaaat tgtgttacgc tccttaatgt gcggcagcaa      1320
     aaattccaga acatcttcat atttatatgt ttttgatgag gttagggctt tgaccacttt      1380
     tggtgttgcg ctttttcaaa tttcttttga attgatccct tatatttgcc caccgttttt      1440
     tgcaattttg atctgtaaaa aaatagaaaa attatctaaa cagaattata cgtaaataag      1500
     taacaacaca aattatacac aatgaatgtt actatagaag taataaatgt tctaaagttg      1560
     ttaaatctac tgtagttttg taaagtaaca atatataaac taatttaatt accaaattgt      1620
     tcaaattcat tataatgtta ctagtggtac atgttttttg ttgtgttcca gatwtctggc      1680
     gacaggagat tctttcaaga ctatttcata cagctaccgg ctgggtcatt caacggtwcg      1740
     ccaaatcgtg aacgaaacgt gtcgagctat agtcaccgaa cttatgagtg aagtgatgcc      1800
     acaaccaaca gaagaatctg gaaagcagtt gcaagggatt tcgaagcatt atggaatttc      1860
     cccaactgta tcggagcgta gatggcaaac atgttactat tgaggctccc gcaaatagcg      1920
     gatcacttta tttcaactac aaaaatactc tttccattgt cctactggcg ttagtggatg      1980
     cgcgctacaa gttcattgca gtcgacgttg gtgcttacgg aagaaacagt gatggtggta      2040
     tttttgctcg ctcttctctc ggaaaacgct tagaaaatgg tacactaaac atacccagcg      2100
     ggaagtattt acctggcaca amgaccgctg caccgcacgt wattgttgct gatgaagcat      2160
     ttcccttaaa aacttaccta atgcggccgt acccagggcg caatcagctg aagattcagg      2220
     aaaaacaagt ttcaacaata gattgtcatt agctcggcga ktggtggaaa atgcgtttgg      2280
     cattttggca caamgattta gaatttattg cagaagaata maaatggcac cwgagaatgt      2340
     ggattacgtt attttagcca cttgcgtgct acacaatttt ttacgtgaac gtagtgacag      2400
     tgtacattta ccacacagtt ataatgacgg gacacaaaac tcacaaccac aaccatgttt      2460
     tgagccattg cgcagtcaac cagggagacc agccgaagat gcttttgcag tgagagagct      2520
     ctttaaaaat tatttggcga ctacagctgc tcatggagtt gaaccttaaa tagtctatga      2580
     ttactaggta tgaatctaat ttcttcgtgt caataagcta ttatactgca ccggttgaaa      2640
     atttttgtaa atgttatgaa tagtgcatca tccgtaagag acgaaaatgt aaataaatat      2700
     aaataataaa taaataacag ttttgtcgca gtgaatgttt tgtctattgt tcgtgaaata      2760
     aaaattatct ttacttacca ttctgttgca aatcttctga tattttcttc catatggtgg      2820
     ctttgtggtt ggcatccaaa tactttggat gcgacatatc gtaaatgcaa ctgtacttcc      2880
     gcacactttc aataagaatt tcgtcatcca tttttaacgt ttcgctgagg aagacgcaat      2940
     aaaactgggg tagacaaccg tcccgggcac ggggagaaat gttcagcccc ttttctcacc      3000
     gaggcacgtt ccaagcacgt gcctggctcg ggcgctgctc ggtacaacgt gaatgggtgc      3060
     atataaaata atgtcaatat tctttgaccg tgtactctcc gtgcctcggc tcggccccga      3120
     cacggtatag cgtgaatcat cc                                               3142
//
ID   Harbinger-1N1_DF repbase;    DNA;    INV; 679 BP.
XX
AC   .
XX
DT   05-JUN-2012 (Rel. 17.07, Created)
DT   05-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-1_DF; Harbinger-1N1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-679
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1183-1183 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TWA TSDs. 60-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 679 BP; 212 A; 117 C; 141 G; 208 T; 1 other;
     ggctgcaaac atagtgcgcg ctgagacgaa gattaagatg aagatgaagc tgaagacgaa        60
     ttgtttgcgt tgctagcaag ctaataggtt gcatagtgca agacgaattt gttgcgattt       120
     tgtgatgtta gtcgcaatgg atttctcatc agatgatgag ctgctgttgg aggaaagttt       180
     attctttaaa ttaaatacag cagaaaattc tttcattmga attcacccaa ttaatttggg       240
     tagaaaagcg ttcggcgaat ttcatcattt atttaatgag ctgcgtaaag atgaaaaaaa       300
     atttgtggag tacaccagaa tgaaaatcag cacatttgat tacattctgt taaaaaattg       360
     aaccgctaat tattaaaaat tggacaaatt ttaacaaaac cccaattata cctgtgtgaa       420
     ttgtaacatg cgctgcgcca aagcatggat agaaagagag agaaataata acaaaggcaa       480
     aatagcaagc gattcgtctt caaaaacagt actgcaccgt ttgaagctga ttgcttgcgt       540
     atcgtcttcg ttcgtcttcg tctttgcgcg cactatgttt acggacgagc gaattcatat       600
     aaattgtttt gcactgtttt tcgtcttcag cttcgtcttc atcttaatct tcgtctcagc       660
     gcgcactatg tttgcagcc                                                    679
//
ID   Harbinger-1N1_DK repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-1N1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-732
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1192-1192 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 732 BP; 211 A; 152 C; 134 G; 234 T; 1 other;
     atagggtctt cccacacaac attaaagcgc atttagcatc cgttgaacaa atgctccata        60
     aggttttgcc gttccgaatt ttcccaaatg ggccggcgtt agttcagcat taaaatctaa       120
     ccacggtttg tttggcgata gttaggcgat agttcttcgg tgcaactctg attcttcttc       180
     ttaatttgac cattcaccac gaaaatgtaa acaaattggc gaggaacaaa tgagatatgg       240
     aatttaaaac gtggcgccaa agctacaagc atgcccaaaa tagttgttgg cgttttttct       300
     gtatattctt gccccaatat gtccccaatt gttactattt aatataaacc gcctacctct       360
     accttatttt aaagattttg gatgcctata ccacctatag acactcttcg gggaatttgc       420
     tctttgttag agaaaaatca ttagaaaaac taaaattcct tgtcatttaa ttcatttaaa       480
     tttaktgcgg ataaattctg acgcaatctg tgccttttgc tgttgtacaa cagccaaaat       540
     agttggtaaa tgctccattt caaatttgca actgccaatt cgacagcctt tgtttacgtt       600
     ttcatgagcc acagctgatc gatcagctgt tcggatgcta aatgcgcttt aatgttgtgt       660
     gggaacacga gtttcacatt tgtgaaaaat cccaaacgtt cctcacaaat gcgctgtgtg       720
     ggaagacagt at                                                           732
//
ID   Harbinger-1N1_DRh repbase;    DNA;    INV; 754 BP.
XX
AC   .
XX
DT   21-AUG-2012 (Rel. 17.09, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-1_DRh; Harbinger-1N1_DRh.
XX
NM   Harbinger-1N1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-754
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(9), 1769-1769 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 19-bp TIRs. TWA TSDs. It is an
CC   internally deleted derivative of Harbinger-1_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 754 BP; 235 A; 151 C; 145 G; 223 T; 0 other;
     tgccctcttc ccatagagtc catccgtctg aaacggttgg gatttttgac aaatgtgaaa        60
     ctccgattcc cacagagcac atccaccatc caccatccga taacagctga tctgaacagc       120
     tgtggctcat cattttagcc cgttgcattt tgcacaacat ttaaaatgag cacaacagcg       180
     ttataaatga tacttggtaa cagactgcaa gtgatctacg cgaacaatca aaacgaacta       240
     atacgtctgc agatttttgc cagcctgcag acaaaatatg aacagctatt gcccaatatt       300
     gtctaaatgg taacaaatca agttcattat atataaatgt ttgttttttg ttttattata       360
     atttcatatt ttatttcatt ttaaatgttc tgctcaatgt tgtgagtaag gtatgcgcct       420
     aggaaagagt ggagcaacac ctaatgctgc cacacggatg gagcagtaat taattaatta       480
     ttacaagtat aaactgcatt ttttgaattg gcgccttcct gttcaaaagt tacccgccat       540
     tattttttta aattttcgta gtgaatgttc caatttccac tgtcaagaag aagaactcag       600
     agttgcacca aaaaaacatc gcctaactat cgcataaaaa agtccgtcaa atttggatgg       660
     ggaactaact gggaattttc ggaacggcaa aaccttatgg accatccgtt caacggatgg       720
     tggatggtgg atggagctct gtgggaagag ggca                                   754
//
ID   Harbinger-1N1_DTa repbase;    DNA;    INV; 887 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   08-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-1N1_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-887
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6208-6208 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 887 BP; 289 A; 193 C; 158 G; 247 T; 0 other;
     tagcctcttc ccatagagtc catccgtttg aaacggttgg gatttttgac gaatgtgaaa        60
     ctcgtgttcc cacagaactc catccaccat ctaccatcca ataacagctg actgaagagc       120
     agttgctcag ctcaacatta acgaaggggg atttcaactc gggaaaactg tcgtaaaatt       180
     gcgttctcct aattttattg tagaataata caataaatag attaagaaaa tagtttaaaa       240
     acatatctga acgtttataa catatcctac aacgagtatg catacatatt gctgactgcg       300
     ggggagccta acctcccgta ccccacactc cgctcttact acgcctctgc ctagccaata       360
     ttaatatgaa aaatttgtaa acaaaaccaa atttatgctg ttttggtaaa ttatagcaac       420
     tttggaactt tataggagta caaagtacac ttttaattaa tattagttat atttacgaag       480
     tgcagaacat attttgacac tttgctgcaa acattgatgt tttcgtacgc acgacagctt       540
     acattttggc ccacacatag caacctgctt gcgaacgctt ttccgctcat aacaaactac       600
     aaataattaa aaaaaaccca aaaaacaatg agctgaagca ttatttaatt ttttcccgcc       660
     atcgatttga tttgttctcg cagtcatcgt tccaattttc acagtcaaga ggaagaattc       720
     agagttgcac cgagaaaaca tcgcctaact atcgcataaa agagcccgtc aaagtccgtc       780
     aaaattggat ggcggactaa ctgggaaatt ttcggaacgg caaaacctta cggaccatcc       840
     gttcaacgga tggtagatgg tggatggagc tctgtgggaa gacccta                     887
//
ID   Harbinger-1_AAe repbase;    DNA;    INV; 6773 BP.
XX
AC   .
XX
DT   10-MAY-2011 (Rel. 17.12, Created)
DT   27-NOV-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   Harbinger DNA transposon from Aedes aegypti.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6773
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6773
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2467-2467 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >99% identity.
CC   The 3' end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..1289
FT                 /product="Harbinger-1_AAe_1p"
FT                 /note="DDE-transposase."
FT                 /translation="MEVDFSLFSSDSSDDELEQMGLVLLRAHSMVADAELT
FT                 GDHHSRSRRPNIDRSAEEGAQRLVTDYFADNPTYNDAQFRRRFRMSRELFV
FT                 RIVQDVKAANSYFVQRADATGKLGLTSLQKCTAAMRQLAYGCPADAVDEYL
FT                 RLSESTARNCLLEFCRTIVRIYEKQYLRTPNESDLRRLLDEGRSRGFPGML
FT                 GSLDCCHWEWKNCPTAWAGQYKGKEKKPTIVLEAVASYDLWIWHAFFGMPG
FT                 STNDINVLERSPLFSDLYCGRTPPVEFEVNGRAYTTGYYLADGIYPPLSTL
FT                 VQTIPSPFGQKRKVRIVASTHTPLFLFTTDSTFDRIHDPFDFAGVNGNAK"
XX
SQ   Sequence 6773 BP; 2155 A; 1228 C; 1253 G; 2135 T; 2 other;
     gagcatcttt agcgggggcg actattcggg tgagtaaaat gatcacccac agagttgtca        60
     ttttagttta gtcactcatt ctcacaccgg tcgctgctat attcagttac ccgattccat       120
     accggtcgtt gctaaatacc actgcggtaa tcaacatagg taaatatttt ttgtcatcac       180
     cggttttcat cgtcagttta cgaatcgcaa cttgtagttt tctaaaagtg gtttatttat       240
     ttacataata gtgtttattc gcaatggagg tggatttttc gttgttttcg tcggattcca       300
     gcgatgacga gctggaacaa atgggcctgg tgttattgcg tgcgcattct atggtggccg       360
     atgcggaact tacgggtgac catcacagtc gttccaggcg acctaatatt gaccgatctg       420
     ctgaagaagg ggctcaacgt ttggtcactg actattttgc ggataatcca acgtacaatg       480
     atgcgcagtt ccgaagacgt ttccggatga gccgagagct attcgttcgt atcgtgcagg       540
     atgtaaaagc cgcgaatagt tattttgtgc aacgcgcgga tgcgacaggc aaactaggat       600
     tgacatcatt acaaaagtgc actgcagcta tgcgccagct tgcatatggc tgccccgctg       660
     acgcagttga tgagtattta cgactatcag agtcaacagc tcgtaattgt ttgttggaat       720
     tctgtcgcac gattgtgaga atttatgaaa aacagtatct acgaactccg aatgaaagcg       780
     atttgcgtag attactggat gaaggccgca gtaggggatt cccagggatg ctaggatcgt       840
     tggattgctg ccactgggag tggaagaact gccccactgc ttgggctggc cagtacaaag       900
     gtaaagagaa aaagcccact attgtactag aagctgtagc atcttatgac ctttggatct       960
     ggcatgcctt ctttggaatg cctggttcca caaatgacat taacgttttg gaacgttccc      1020
     cgttattttc ggatttatac tgtggccgga ctccccctgt agaattcgaa gtcaacggaa      1080
     gagcatatac cactgggtac tacttggcgg atggaattta cccaccatta tcgacattag      1140
     tccagactat tccttctcca tttggccaaa aacggaaggt acgtattgtg gctagtacac      1200
     atacacctct attcttgttt acgacggatt caactttcga tcgaatccat gacccatttg      1260
     attttgctgg cgtaaacggg aatgcgaagt gactttcgat cgaaagtgca ttcgaacgta      1320
     aacaagaata ggggtgatat acttctaaat gtttttgctg actgtaaatt aaacaaattt      1380
     tctgcttttc cagcatttcg ccaaactcca agaagcggct aggaaggacg tggaacgtgc      1440
     ttttggggta ctaatggcac gattcgcaat tctgaagaat cctgctcgat tatggcgcag      1500
     agaggatcta gcaacgatta tgcgctcttg cataatatta cacaatatga taattgagca      1560
     ccagcgtgat gcttcgactg agcctgaaag agagttctgg gtccacgatg gaccattata      1620
     catgggattt gaagatggga gcttttcggc tttccttgaa cgttatgaga atgttcataa      1680
     tgcaacggtg cataaccagt tgcaagaaga tttgatcgag catttgtgga gagtaagagg      1740
     agaagaagag taaaatacga ccgcaaacac gtacacaaac agtttgttac atttaagcaa      1800
     tctatttaaa atgatgatgc atacaggcca tatctaacaa tttttaattt tttaattatt      1860
     aatcgaatgt ccagctcgaa ccgctatctt gtgctcttga agttttgagg tatggcttcg      1920
     attcatcttc accttatacg agaaatatgt tcgcaatatc gatgcaagcc ttcaagagat      1980
     atattttaaa taaatgtttt tttaagtctt aaaagacgaa atggtttctc aggccttatt      2040
     tcaaaatcat ttaaagactg ctcatttaat ttcaaaatca tttaaaggtg ctaaagacac      2100
     caaagaaact ttcagagagt cttacgcgat ttttctacag gttctttatt ctagcgattt      2160
     ccccagatgt tgctggaata ctttacaaat tcatatagag atttctccac aattttttgc      2220
     aggttctcgt ccaaaatttc cttcagtgat tttctttgga tgcttaaaga tcaacgatcc      2280
     gtcatcgtaa tcatcgtcat catcgaaact tgaaaagcac tttttctgtt caaaactaaa      2340
     aattattcga tgaaaatgtg ttcactgtgt ttcggtaatg caacagaata cagtgaacac      2400
     attttcctgt aaattttctt gattttgaac ggaaaaactg cttttgaaaa ttccggatca      2460
     atgacggatc ttgccccctt aaagagctgt accagtattt tatattttat ttgggtctac      2520
     atcaaccttg cctacccatg ctctccaggt cttggtgcac ctggtcaatc cacctagcta      2580
     gctgcgctcc acgcctactt gtctcgattg aattcgaagt gaatgtgtta acacatgccg      2640
     gcattcttgc aacatgccct gctcagcttc cgcatgttag gagcggttta caacaacgtc      2700
     tgttccccat gtcggggacg gatgatcatc gtctgagtgc catagaagaa ctcgttaaac      2760
     tgtgcactat ggttctccga acatttaggg gaaaatggtc ctcgagggag ttggtggctg      2820
     gccctgtaag gcaacctaaa aatacataag ctaggaacgt caacgtgatt ttccgatttc      2880
     tcattctaga tcttccaata attccagatt ttttgagtaa accctatagc agtgattctc      2940
     aaccttttga agttttacaa agtttccgga aagttgatga tctctaaaca acagtttatg      3000
     gaaatttttc tattgaactt ctagacaata gctgttaaaa tgtaaccaat aactctgcca      3060
     aaacctcgtc agatatccgt taagaatgtt tgtagtttta ttaggattct ttactatgat      3120
     tatgtttcga atatctcatt aaaaatattg ctgatagatt caacaacatg gtttgagtta      3180
     aaccgtgaaa actttcattt tttcattccc gtgaataggt cgctaagaaa cttctcagaa      3240
     actcaccagg aagctgtcgg aatatgtcaa ggattagaag gattagttct aaaaatgcca      3300
     gatattkttt gctacattgc taggtaagtt gttaattttg ttttctagct tgaactaaaa      3360
     gataggcttg taatctcata tgggcagagt tgcattaaca ttattttacc agtgattgtg      3420
     tgagtaaaaa agtcattttt ctaatattga aaaaaaaact ccacttatta aaaaaaaaaa      3480
     aggctacgcg gaccctctga gaagccttta cggcccccta ggggtccgcg taccaccggt      3540
     tgagaaaccc tgccctatag gtttgttcca gaggacttct ttgtaggaaa atcgttagga      3600
     ttttttttca ggcaacttta cgacatttcc tcccagagtt aagccaattt ttccagctat      3660
     tctaccagcc tttattatac caggtattgc ctcaaaattt ctccagattt tgtccatgaa      3720
     ttctcttgag agctttttca ggaattccac aatgaattca accagggatt tctcatagaa      3780
     tttcttcaca aaaatcttca gaaatktctc taacatcatt actaaggctt actgcagcaa      3840
     ttcttctcaa cttttctcaa atattttttc aaataaaatc tcaatgaata atggatgttt      3900
     cattaaaggt tttacaccat atccgatcat tccagaaata ctttgacaat ttgttggaga      3960
     catccctgaa tgaaaactct ctgaatgact tcttcgaaca caacctggga aatataccca      4020
     tatattattt gagaagcatt tctggaggaa ttttagtaga aatgtctggt taaactttta      4080
     agattattat ttatctttat tagagtggct tttcgccctt ggcgagttca ccactaagaa      4140
     cttttaagat atcttgtaca acaattgaag tgaatcaaaa gaaatcagtt gataaactac      4200
     tggttgaatt ctcgaaggtg tcttaaacgg gagtcttgaa cgaacactta ggtaaatcaa      4260
     tgcaatattt gaaggaattc ttgaaaaaaa aacttagtga aattctaggt taaattcttt      4320
     gagatatctg catcaaaatt catgagaaag ctagtccgca aaataatctc caaataaact      4380
     catggagaaa tcgtcgaagt accaaaaaga aaccttggtg aaatatctga tattataata      4440
     agatttctaa ataataaatg acgcaaaatt gcatacaata atacttattg tttgaatgtt      4500
     tcgaggaatt tcaaaacaaa atagaaatat cgtatgcaga aagttttgtc agattctctg      4560
     gaaatcacat gcaaaacttt atcacctgat ttttgtcttt tttccaggca tgagaattgc      4620
     aaaaggataa cagaatttag cattaaaata gaatgtttga atagcaaaat ttgttgtttg      4680
     tttgtttgaa ataagagtta aaataacaaa aataataact cggttagtat ggcatgaaaa      4740
     cttaataata tcatatttcg ccattgtaat aacaaaataa aaacaaaagt atgggcaaca      4800
     gtaaatagca aaatatgtta ttatttagat attgataaca atataataat caaataagct      4860
     attcacgtgt agaacaaatt aatggtaatt ttagttctct gacttcaata tctaaatttg      4920
     attgagaaat aaactttttg ctttgctatg aaaaacttat gcttttttaa tcttgaatga      4980
     atatcatacg aatagtaaaa tgagatatta tggcaaaatt tgatattagt ttgttctcat      5040
     aattaattaa agaaagtttt caaaagtcaa aatttgtaat cgcgggtaga gatgaataac      5100
     aaaataatga taaaatatgg aaaaaaaatg caattatatc tagtttaact actattatgt      5160
     tattgatata tgacattaaa tatctcatca atagcaaaac atacaatcat agcaaaattt      5220
     gtcaatggta tgttatactt gaaagtcatg taataactaa tcaataacaa aatatactat      5280
     catggtaaaa tttgttattt gtgcaaaaat aataaaaaac ataaaatatt taaagaatag      5340
     caaacatcgc catcgcgtta aggagggtgg ggggtggata gggtgttcga aagttatcaa      5400
     ttttggtgtt acgtaataaa tggacgctgc ctactgaaaa tgagcctgtg catgttataa      5460
     aacgtttgac ttttactgtg cgccctgttt tcaagttgca cgtgagagag agtgagacag      5520
     caccaacaca cggcgcacag taaaagtaaa aaaaaaacac aagaatttat ggcacgtaca      5580
     gaggctcatt tctttagggg tcgtccatga attacgtcag ggtcttaggg ggaaaagttt      5640
     tttttagtaa aaagcgacaa ttcaaaaaaa tagaagtctc catataaaaa agtatgacat      5700
     tggcgggata tggttgatcc aaattttgtg tgacattatt tatgaacatt cttccaacca      5760
     gcttcatctt atgccaggtg acgagaaacg cctacaaagg ttcaactagt gtattaaaac      5820
     aaaataacga caaacgattc aaacgaataa cgaaataata ctgtaatttt cgtaaaaaca      5880
     aattaaaatc aattaaataa aaaaatgtca cccattgaca atcatttgat cactcactct      5940
     ccgtactgta ttcaagatac tgcatctcct gagactgaaa atcttcctcg tcaggctcgt      6000
     cgctaacttc ttcgcatctt attgcgtcca acgaacctgt tgctgtgtgt tctggcattg      6060
     cttcttccaa aattctttct tgttctattt tgtaatactt ttttgcgata tcgcttaatg      6120
     ttgaaaaatc gacggacatt atggcatgat tcgccatcct atttatggcc atcgtccttt      6180
     ctcgtgacaa aagagccttt ttttcggctg cttttgccag aagattgctc gccttcacaa      6240
     tctcagctcc aatgtccgca tttggtgtct gctgcagctt caactttttt gaagcttttt      6300
     ggcccattgg acgactggat gatgccgttg aaatgggttc atcatcctcg ttttcttccg      6360
     actgcctacg cttcgacgag ttaactgccg ccacctacaa tcaggaaagt acatagtatt      6420
     attttagcac atattctgcc tatctacagt ggcccaaaat tattattcgt acagggcatt      6480
     gtgttcacat cattggtaaa aactattgaa tgatacaatc ctgggtaaag gtgaataaca      6540
     aaataatgtt aaaataagaa caaattttgc aattatatct agtttaacca ttattatgtt      6600
     attaatatat tacattaaat atctcatcaa taacaaaaca tacaatcgta gcaaaatttg      6660
     tcattggtat gttatacttg aaagtcatgt aataactaat caataacaaa ataaactatc      6720
     atggtaaaat ttgtaagaaa tactaaaaca acaataaata tctaaagaat aat             6773
//
ID   Harbinger-1_DF repbase;    DNA;    INV; 2066 BP.
XX
AC   .
XX
DT   05-JUN-2012 (Rel. 17.07, Created)
DT   05-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2066
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1184-1184 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2066 BP; 608 A; 356 C; 408 G; 688 T; 6 other;
     ggctgcaaac atagtgcgcg ctgagacgaa gattaagatg aagatgaagc tgaagacgaa        60
     ttgtttgcgt tgctagcaag ctaataggtt gcatagtgca agacgaattt gttgcgattt       120
     tgtgatgtta gtcgcaatgg atttctcatc agatgatgag ctgctgttgg aggaaagttt       180
     attttttaaa ttaaaatata gcaaaaaagt gactgaaaga attcacccaa ttaatttggg       240
     tagaaaggcg ttcggcgaat ttcatcattt atttaatgag ctgcggaaag atgaaaaaaa       300
     atttgtggag tacaccagaa tgaaaatcag cacgtttgat tacattctgt taaaaattga       360
     accgctaatt attaaaaatt ggacaaattt taacaaaacc ccaattatac ctgcagaaag       420
     gctaattgta acgttaaggt agaacattat tcaaaatata tttattttca tttatttcaa       480
     tcttttcatt tagttacatg ttttttaatt tttcttaatt tgaaaatgta ataatgtttc       540
     ctgatgaaac gtattggctc ggctcctgtg gggataaagc attatcggag tattgagttg       600
     gcgaagattc aaatacagtc ggtgatggta gagatatgtt ggaagcctgg ttttggatgt       660
     tttgaaattg aaaagagcgc cccaaattgt acgcatagtt ataaactgat ttttgcatgt       720
     ccattctgca taaaagtttc gtttccggat ccatttttct aacgtgtggc aataagctca       780
     taaaaaagcc atatcctcat cgtcagctgg aatcttgttt ttatttttct gctccaacag       840
     ctccaacttc tttttttcta tattgaggat ttcaccctca atgttgttat ggcgccgttt       900
     aagattcctt ggagtatgtt ttggggtgga cgtttcaact tcaaatgtac tcaaagaatt       960
     ttcttcatca tattgcggcg cctctttatc tgcactatgc atckcctcta catctgcact      1020
     acgtagaatc ttcgccaaca taaatgcttw tatccttaac ctcatgggtt ctggggtgac      1080
     ttaaatttcc ggaagactgg cggcacttta tctggtcctt tataaaattc atcgactcaa      1140
     agtgaatcca ttgagaacac atctcgttga gggtatcagg tccagcgtcc ccagaacgtt      1200
     ccggtggaaa tttcctcagt tcagctcgaa acgtgtccct caactgtttc catttttttt      1260
     taaaggacat ggctgaaaat acatacatat attaatattt cagtagttac gataataaca      1320
     ttgttttaac ttgctttctt gttttagata tctcgctact ggcacttcat ttagatctat      1380
     atcttttaac tttcgaatgg gtgcttcaac ggttcgttct attgtgatag aaacatgcga      1440
     agctttgtgg acagttttgc aacctctaca tatggctgtt cccacagaac aaaatttaac      1500
     aaaagttgcg gatcagtatt ggaatctttg gcaatttcca aattgtkttg gatcwattga      1560
     tggaaagcac attcgtttaa aatgtcagtg cattcaggat caatgtttta waattataag      1620
     aaatttttst cgattgtgct gcaggcagta gcagacgcaa agtgtaaatt tgttaccatc      1680
     gaagttggtg gttacggacg gcaaagtaat ggtggaactt ttgcttcctt agcgatttac      1740
     acaacgaaac aattctggag acttaaagtt tccgaaggat tcctatttgc ccaataccat      1800
     cgtaactatg ccatatcgct gctgcatgga gcttatcctt tctttggact gggttcttcg      1860
     accttatgcc agaagaaatc taacattgga aaatgaatac tttaatcgtc gtttgtccag      1920
     agcgcgaagg tgtgtggaat gtgcatttgg cataattaac tccaagtgga gaatattatg      1980
     gaagccaatt gaaacgacac cacctaacgc agaaattatt gttaaagcaa tttgtatact      2040
     gcataataca atgttggatt tagaag                                           2066
//
ID   Harbinger-1_DK repbase;    DNA;    INV; 2631 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2631
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1193-1193 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2631 BP; 730 A; 574 C; 545 G; 778 T; 4 other;
     tactgtcttc ccacacagcg catttgtgag gaacgtttgg gatttttcac aaataagtga        60
     aactcgtgtt cccacacagc gtcaaagcac attcggcatc cgaacagctg atcgatcagc       120
     tgtggctcat gaaaacgtaa acaaaggctg tcgaattggc tgtcgcaaaa ttaaaatgga       180
     gcagttacca actattttgg ctgttgtaca gcagcaaaat cttagattgc gacaggtttt       240
     catgtcgcta aatgtaaatg acgacgacga cttggaagct ctccttgaag tcctttactc       300
     taccaaagag caaatgccac gaagmgtgtg gatggtggta ggtgctacca aaatttaatt       360
     aaatacagat taaatatgat ttgtatatta aatagaagcg attcggaaca ttttgggaga       420
     aggatgtacc ggaaaacaac gatgagttct ttaaagagag ctttcggatg gagaagcgta       480
     ccttttcctt tttggtggat cgcctagaag ttctccgaaa gaaggatacc aactggcgaa       540
     ctgcaatttc tttggagaag aggattgcta tcgccttgta caccttggga tcatcctcgg       600
     agtatcgttc cattggaagg ctattcggtg tggcacaaaa cactgtgtgc aaaatactcc       660
     atgaattttg ccgggctgtc attgccgagt ttgccggtga attcatgtcc cctgactatt       720
     taactctcga aaaagttgag gagtgtgtca ggggctttga acaaattgga tttccccaat       780
     gtctaggagc aattggtaat aaatcaattc attaatcagt tcacgtacat atataaaata       840
     tatatatcta tattctagat ggttgtcata tcgaaataaa accatcggca gcagatgcag       900
     tcgatcatca caactataaa ggttggtact caatagtact attcgctctt gtggattaca       960
     ggcaagttac ctgctcttta gatgttttat aatctgctaa ttgtattaaa ttgtatatta      1020
     actataggta cagattcacc tatgtaaaca tcggctctgc agggcgttgc aacgactcga      1080
     ctatttttca aaagtctagc cttgcaagga aattggggtc gtctacatta atttgggaaa      1140
     aatcaaagga aatttgtggc gtacaagttc cgctgctgct tattggagac tcggctttcc      1200
     gattttccca aacgctgatg aaaccatacc cattttcgac gaccgcgagc atagaagagc      1260
     gcacatttaa ctacaatttg tccaaagcta ggcgagttgt agaaaatgct tttgggcatt      1320
     taaaggccag gtttcgattt gttggaaagg gacttgacag ccactacaaa aacaataatg      1380
     caattgttct aacctgttgt attttgcata acattttaaa tgagcacaac agcgttatta      1440
     atgataattg gcaactggct gccagtgacc ttcgkgaaca acccaatcga accaatatgt      1500
     ctgcagattt tagccagcct gctgaaaaag ttagagcagc aattgctcaa tattgtctta      1560
     atggaaamaa attttttatt atttttatat tttttttctt tcagttttgg actccctcag      1620
     aaattggaga agttccgact ggaacttctc ctggctgtcc gccattcttt gcagaatttc      1680
     cgtctgcgct ctctgctcct ccagcctctc tcgagcaatt tcgaccagct cgcttttttg      1740
     gtctactctt gctcttttgg ccggaggcaa actgccggaa cgtcgacttc cgctcagatt      1800
     tgattcctcc gggtcctcca gaacttcctc tgaaaaatac tccgtcgtat ctgcaataaa      1860
     aacatgttaa ttattgagtg tacacaaaaa ctatctggga gggaacatac tctcgttgtc      1920
     caccgtatcc tgctccatat tgtggacacg gaacgagccg aggaacgcgt gcagcgcctc      1980
     aaaatgctgc cacccagatg gagccccacc gcttggcccc attttgtttt ttcctgcctg      2040
     caaataataa taatttcgcg gaataacaca attaatgcaa tgtgttctgg tactcatatt      2100
     tacttgtact tcttcgtcat gttctccagc ttcgtcttga cgtccttcca tgacacatca      2160
     tacccagcct ccatcaaggt ctgggccatc tccatgtata catggcagtt cttgcgagat      2220
     cctcgcaact gctcatgttc tcctgccata catcgatgag caggcactcc atatgcaggg      2280
     tccacctcag cttcccaccg gcggttctag tatcatctgc aaaattaaaa acaattatta      2340
     atattaaaat gtaaacaacc tgttgatata caacctgttg ctttggcgcc ttccattttt      2400
     catttgttcc tcgccaagtt tgtttacatt ttcgtggtga atggtcaaat taagaagaag      2460
     aatcagagtt gcaccgaaaa actatcgcct aactatcgcc aaacaaacgg tggttagatt      2520
     twgatgcgtt ctaacgccgg tccatttggg aaaattcgga acggcaaaac cttatggacc      2580
     gtttgttcaa cggacggtgg atgcgctttg acggtgtgtg ggaagaccct a               2631
//
ID   Harbinger-1_DRh repbase;    DNA;    INV; 2498 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2498
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1385-1385 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2498 BP; 699 A; 523 C; 526 G; 704 T; 46 other;
     tgccctcttc ccatagagtc catccgtccg aaacggttgg gatttttgac aaatgtgaaa        60
     maccgattcc cacagagcac caccatccac catccgataa cagctgatct gaacagctgt       120
     gcctamacaa aaaacaagcg acmaktktwg aagtttattc tgcggcatta atatggacaa       180
     cmtaccaatc attttggcag ctgtacaaca gcaaaacctc aagctgattg agsaattttt       240
     ggcamccaat tcaggggagt ggcatgacga ggaattggag gttttggaaa ggattttttc       300
     tggaaaggag caaatgccac gaagcgtgtg gatgctggcc taaactatgc gttttatatt       360
     aaacagaagc gatacgggac attttgggag aaggatgtgc aggaaaacaa cgaaatgttc       420
     ttcaaggaaa gctttcgaat ggagaagagg accttttcgt ttttggtgga ccgactaggt       480
     gttttgcgga agaagaacac gaactggcga aaagcaattc ctcttgaaaa gaggattgct       540
     atagccttat acaccttggg atcatccgcg gaatatcgtt ccatcggaag gctgtttgga       600
     gtcgcacaaa acactgtgtg caaaattctt cacgaatttt gcggggcact cattttagag       660
     tttgccgacg agttcatgtc acccgactac ttaactcctg aaaaagtgga cgaatgcgtc       720
     aaagggttcg aagaaattgg atttccccag tgtttaggtg caattggtaa gacatmattt       780
     catmaaatca gatcacggtt atagcaatat ataattttta gatggttgtc atatcgaaat       840
     aaagccgtta gcagcagaag cagtcgatca ccacaactac aaaggctggt actcaatagt       900
     actattcgct ctcgtggatt acaggtaagc twtcctcttc taagagctca acaatcttat       960
     aatcgcattg tattttaaat ttattacaga tacagattca cctatgtgaa tatcggctct      1020
     gctgggcgct gccacgactc ggctattttc caaaagtcca gcctggcaag gaaaatggtc      1080
     tcttctccgt tccttcagga aaaatcaagg gaaatttgtg gcgtacaagt tcctgtgctg      1140
     cttattgggg actctgcctt ccgattttcc caaacgctga tgaagccgta cccattttca      1200
     acaactgcat ccgaggaaca gcaacatttt aactacaatt tgtccaaagc taggcgagtt      1260
     gtagaaaatg catttggcca tttaaaggca aggtttcggt tcattgggaa aggtcttgac      1320
     agccattaca aaaataacaa tgcagtcatt ctagcctgtt gcattttgca caatatttta      1380
     aatgagcaca acagcgctat aaatgatgct tggcaacaga ctgcaagtga cctaagggag      1440
     caaccaaatc ggactaatat gtctgcagat tttagcccgc ctgccgaaaa aataagatca      1500
     gctattgccc aatattgttt gaatggcacc gaataaagtt cattaaatat caatttgttt      1560
     gttttttgat tatttatttt catttaaatt ttttaatttt ttgatttttt taacaggtct      1620
     aacaaatcag actggaattt gtctgccatt ctcgatttag tctgcttctc ctgctgctcc      1680
     agcctttttc gagctatctc cacaagctcg tccttgtggt caacctttgt tcgctttgca      1740
     ggaggggcag aggcttgact tactgcagat gtcacctcca caaagtattc tttggcacct      1800
     caataaataa atacatatta gttaattgta aaccaaaata taagtctgaa tacatactct      1860
     cgtatccaca gtttctgctc gtgttgtgga tgcggaatgc ccmtaggwag gagtggagca      1920
     mmtcatagtk ctgccacacg gaaggagccc caccgcttgg ccsgatttta ttttttccwg      1980
     cctgsaaaga atawtaccgt ggaatggatt sccwtawatt gttgctcgca tataagttac      2040
     ctgtttgtcm wattttmkat ttttgtccgc acatccttgw akgacacatc awatccggct      2100
     tccatcaggg actgggccat ctccwtgtat acgtggacat tttttcgwgc tccccgcaac      2160
     tgctcgatgt tttcctgcca aatgtcgatc agcaggagct ccatctgcac cgtccacmtc      2220
     agcttsccac ckgcggtwmg cgtattatcg actgtgaaat kaaaaacaat gaattattac      2280
     awatataagg awcatttatt gttcatacct sttgcttcgg cgccttccat taagaagaag      2340
     aactcmgagt tgcaccgaaa aacatcgcct aactatcgcw taaaaaagtc cgtcaaattc      2400
     ggatggggaa ctgggaattk tcggaacggc aaaaccttat ggaccatccg ttsaacggat      2460
     ggtggatggt ggatggtgga tggagctctg tgggaaga                              2498
//
ID   Harbinger-1_DTa repbase;    DNA;    INV; 2681 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_DTa;
KW   autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2681
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6257-6257 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 2681 BP; 762 A; 571 C; 559 G; 775 T; 14 other;
     tagcctcttc ccatacagtc catccgtgtg aaacggttgg gatttttgac gaatgtgaaa        60
     ctcgtgttcc cacagaactc catccaccat ctaccatccg atgacagctg atctgaacag       120
     ctgtggctca tcaaaacata aacaaaggtt gttgaagagc gagattaaaa ttaaaatgaa       180
     caatttctca actattttgg ctgttgttca acagcaaaac cttaacttgc tacagctttt       240
     taaggcagtc aatgcagagg agtggaatga tgacgaattg gagctgtatg aagcmatttt       300
     ttcaggaaag gatcaaattc caagacgtgt gtggatggtg gtaagttttg tcaaattcta       360
     ttaaaaacaa agttaaacta tccgtctcat attaaacaga agcgatacgg gacattttgg       420
     gaaaaggata tacccgaaaa taacgaggaa tttttcaaag agagctttcg gatggagaag       480
     aagacctttt cgttcttggt ggatcggctt ggagttctgg ctaaaaagga cacaaactgg       540
     cgagctgcaa ttcctctgga aaagaggatt gctattgccc tatatacctt gggatcatcc       600
     tcggaatatc gatccgttgg aaggcttttc ggagtggcac aaaacacggt gtgcaaaatt       660
     ctccacgaat tttgcgggct ctcatattgg agctcggaag tgagtttatg tctcccgact       720
     acctaactcc agaaaaagtt gacgaatgtg tcaaggggtt cgaagcaatt gggtttccac       780
     agtgtctagg agcaattggt aagacatcac ttcatcaatt tagttcatgg ctataacaat       840
     atacattttt tagatgggtg ccacattgaa attaaaccga cagcagcaga agcaatagac       900
     catcacaatt acaagggttg gtactcaatt gtactattcg ctctcgtgga ttacaggtaa       960
     attacctttt tctaagtgct caacagtctt cttatatttt atatgtacta cagatataga      1020
     ttcacttacg ttaacatcgg atctgcaggg cgatgccacg actctgcaat tttccaaagg      1080
     tctagcctgg ccagaaaaat ggtctctact ccttttcttc aggagaaaac cagagaaatt      1140
     tgcggcgtag aagttccagt gctgcttatt ggggactcgg cctttcggtt ctcgcgaaca      1200
     ctgatgaaac cgtatccctt ttccacaact gcatccgcag agcagcggaa ttttaactac      1260
     aatctctcta aagccaggcg agttgtagag aatgcattcg gccatttaaa ggcaagattc      1320
     cggtttatcg gaaaaggttt agacagccat tataaaaaca ataatggagt gattcttgcc      1380
     tgctgcattt tgcataatat tttaaatgag cacaacagca caattaatga caattggcaa      1440
     ccgactgcaa gtgacctacg cgaacaaccg ttgcgtacta atatgtctgc agatttcagc      1500
     cagcctgctg aaagagtgcg atcagctatc gcccaatatt gccaaaatat aaataaataa      1560
     agtttattaa atacaaatat gtttgatttt gttttattct aacttcatgt taatttgatt      1620
     agctacttct tattgtttct agttgttctg acgcctcaag agctccaaca aatcagtttg      1680
     gaactgagct tggctgtctg ccattctaga cattatttca gtctgcgctc gctgctcatc      1740
     cagcctgtcc ctggctatct ctacaagctc ggccttgtgg tctaatttgg cgcgctttgc      1800
     gggggcccat tgmttcctga gcgttggctt ccgctgcaga tagaggctac attgtcctcg      1860
     gggtcctcat ccaatgtctc cacaaagtat tcattccagt ctgcagtaaa tacataatgt      1920
     tagttaataa taaactakaa attaagtctg gggacatact ctcgttctcc aagttggact      1980
     tctccgtgtt gtggatgcgg aatgcaccca ggaacgagtg aagcaactcg tagtgctgcc      2040
     acgaagaagg agcgccacca cttatttttc tcctgcctgc aaggattaac atattggwat      2100
     tattttagaa tatattaacg acggttgcaa ataaaagtta cctgtactac ttggtcaggt      2160
     tctcaatttt tgtccgtacg tctttgtaat ctatgtcgaa cccagcctcc atcatagact      2220
     gggccatctc catataaata tggacatttt tgcggttgct tcgcaactgc tcgacgttct      2280
     cctgccaaac gtcgatcagc aggagctcca tctccacagt ccacctcagc ttgccggtgt      2340
     tggttcgcgt aatttcaact tcaaaatgaa taacaatgaa taattataaa twmaaacagc      2400
     wtttattgtg catacctgtt tsttcagcgc cwtccatttt tsaaatgttc cmtgcsattm      2460
     ttgtttacgt tttcgcwgtg aatgttccaa ttctcactgt caagaagaag aattcagagc      2520
     tgcaccgaaa aacatcgcct aaatatcgca taaaagagcc cgtcaaagtc cgtcaaaatt      2580
     ggatggcgga ctaactggga aattttcgga acggcaaaac cttacggacc atccgttcaa      2640
     cggatggtag atggtggatg gagctctgtg ggaagaccct a                          2681
//
ID   Harbinger-1_DW repbase;    DNA;    INV; 3689 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Harbinger-like DNA transposon: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3689
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1738-1738 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. The exact ORF is uncertain due to a
CC   duplication in the 5' portion of the transposon. The original
CC   consensus included a portion of a Gypsy element (deleted).
XX
FH   Key           Location/Qualifiers
FT   CDS           1883..2779
FT                 /product="Harbinger-1_DW_1p"
FT                 /translation="IKLTNCRYLATGASFTSLSYSFKIGRTTVSVIVKETV
FT                 KALWEELQPKHMPQPSKEMITEIADDFWKLWNFPNCAGAIDGKHIRIQCPP
FT                 HSGSMFYNYKKFFSVVLQGVADSNCKFIAIEVGGYGKQSDGGTFNASQFYR
FT                 QLKSRQFMPPDTNLPGSSIKMPYVFVGDEAYPLLETLLRPYSSRTINAERE
FT                 YFNKRLSRARRCIECAFRIMTSKWRLLWKPIETDPDFVDIIVKAICILHNA
FT                 IIDLEGSPNVNQDTHTSNENNGSEELFHPTSYRSGQLVRDAFCSFIVQIGF
FT                 DIKNPQI"
XX
SQ   Sequence 3689 BP; 1142 A; 658 C; 677 G; 1212 T; 0 other;
     aggctgatgt cagagtggac gcgataagcg atgcgatgct acaagcgata attatcgcag        60
     cgatctgcaa agcgatggca tggcagagtg aaagctttcc gcaaagcgag aaacctagcg       120
     agggttctaa ttttagtctc agttgcaatc atcgtcgtca tggattcaga cgaagaattt       180
     tttgcgtcag cagcagttat aaatgttgta atgaaaaaaa ccaccgggat ccatccactg       240
     aatagaaacc gtttaaaagg agagtttaat agtttgtata aaaatttaag gcagtatcct       300
     gacaaatttt tcaattatac tcgaatgtcg atcaatacat tcgattatat tttgacgaag       360
     attcattcaa aactggaaaa gtgttggaca aattttgttg ttaatcccat aacgccatgt       420
     gaaaaactta ttctaacttt gaggtaacta tgtaattata tatttatttt ttttttgcaa       480
     caaaaatgtt tgattttttt aattgttttc ggaattattt ccgtctccaa aatgagaaag       540
     tacgatcttt tgaatttcca ttctgcaaag catttttttt cgcatgtcca tagacttcat       600
     atatggcaga aggctctcaa aaaaacattg gtcatcgtcg ggtgtttttg gtgtattaat       660
     ttttttttct aaaagtttaa gtttctcctt ctcaatggac agcagttgag caggcatact       720
     taattttatt tttttatttt ttttgggaaa attctcttcc tcatctgtgt cacatagctc       780
     agccaaattg tgggataatt ctgtgtcctg atgtcagagt ggacgcgata agcgatgcga       840
     tgctacaagc gataattatc gcagcgatct gcaaagcgat ggcatggcag agtgaaagct       900
     ttccgcaaag cgagaaacct agcgagggtt ctaattttag tctcagttgc aatcatcgtc       960
     gtcatggatt cagacgaaga attttttgcg tcagcagcag ttataaatgt tgtaatgaaa      1020
     aaaaccaccg ggatccatcc actgaataga aaccgtttaa aaggagagtt taatagtttg      1080
     tataaaaatt taaggcagta tcctgacaaa tttttcaatt atactcgaat gtcgatcaat      1140
     acattcgatt atattttgac gaagattcat tcaaaactgg aaaagtgttg gacaaatttt      1200
     gttgttaatc ccataacgcc atgtgaaaaa cttattctaa ctttgaggta actatgtaat      1260
     tatatatatt attttttttt tgcaacaaaa atgtttgatt tttgtaattg ttttcggaat      1320
     tatttccgtc tccaaaatga gaaagtacga tcttttgaat ttccattctg caaagcattt      1380
     tttttcgcat gtccatagac ttcatatatg gcagaaggct ctcaaaaaaa cattggtcat      1440
     cgtcgggtgt ttttggtgta ttaatttttt tttctaaaag tttaagtttc tccttctcaa      1500
     tggacagcag ttgagaggca tacttaattt tattttttta ttttttttgg gaaaattctc      1560
     ttcctcatct gtgtcacata gctcagccaa attgtgggat aattctgtgt ccagcgaatc      1620
     ttcacactct ggaacacaga aacttttatt ggagcagctg gcctccaaat ttccacacgt      1680
     ttgcctgggc ttcatttggt cttttaaaaa taaaagggac tcaaaatgag gccaagaggt      1740
     atagatgcca gcatcaggtg cacagtctcc tgacttttct gttggcattt ttttatactc      1800
     atttcgaaat tggtcccgaa gatttttcca tttttttttc aaacagtctc ctgaaggtta      1860
     atcaaaaaat ttaattacgt aaataaaatt aaccaattgc agatatttag caacgggggc      1920
     ttcgtttact tcattgtcgt attcatttaa aattggaagg actacagtct ccgttattgt      1980
     aaaggaaaca gtcaaggcac tttgggagga gttgcagcca aagcacatgc cacagccttc      2040
     aaaagaaatg attaccgaga tagctgatga cttttggaaa ttgtggaact tcccaaattg      2100
     tgctggggct attgacggaa aacacattcg tattcagtgt ccacctcatt ctggatccat      2160
     gttctacaat tacaaaaaat ttttttctgt tgttcttcaa ggagtggctg attcaaactg      2220
     caaatttatt gcaattgaag ttggaggata tggaaaacaa agtgatggtg gcacttttaa      2280
     tgcatcacag ttttatcgtc aacttaaatc tcgacaattt atgcctccag atactaattt      2340
     gcctggatca agtattaaaa tgccctacgt ttttgtaggc gatgaagcat atccgctatt      2400
     ggaaactctg ttaaggccat actcaagccg cactattaat gctgaaagag agtatttcaa      2460
     caagcgactc tcccgagctc gcaggtgcat tgaatgtgct tttcgaatta tgacttccaa      2520
     atggcgtttg ctctggaagc caattgaaac cgatccagat ttcgtcgaca ttattgtaaa      2580
     ggcaatttgt attctgcata atgcaattat tgaccttgag ggaagtccca atgtcaatca      2640
     agacacacac acaagcaatg aaaataatgg aagtgaagag ttatttcacc caacaagtta      2700
     cagatctgga caacttgttc gtgatgcctt ttgcagtttt attgtacaaa taggctttga      2760
     tattaaaaat ccacaaatat aatataagca aaacttactt ggtacttgga gacttttctc      2820
     aatctctttc caattctttt caaccaccag ccgattgtgg taatttttac atttttggtc      2880
     ccacaaaaca gaacgacaaa aaatttccgt tattaagtcc tcaacattta tgttcgcact      2940
     cgaactcatt ttagcatttg cttcgttgga ctgtttaatt gcatttgaaa gcaaatacac      3000
     aaaaatataa agtgtttgca tcaaactgtt attaaagctt gagttgcgca aaaacatttt      3060
     tcaaccaaaa accaactatt tttataccct tgcagagggt attataaaat tggtcagatg      3120
     tttgtaacgc acagaaggag acgtttccga ccccataaat tttttttatt acccgggaaa      3180
     aataaagtat gaaaccatag gatcggacca ctatatcata tagctcacga agaactggaa      3240
     gaaacatttt cataaaaatc ggagtatgct atgaaattta catatgtgat tgtaaaataa      3300
     ttgtagaata gagagtaaaa ttgttttgtt tgtatattga tgaattgagt tgcagaaaac      3360
     aaattttgaa catgtaaaat tattattacc aaggactgca agggtatata aacttcggca      3420
     tagccgatgt tagcttcttt aatattttaa gctcagaacg caacgaaaac acacgtataa      3480
     caacagttgg atgaagcgat aaagcgagaa agcgattcag aatcgctttc tcgcaactcg      3540
     cttcaacttg tcgctttggc tctcttctcg cttcgcttgc gctctgacat gcattcaacg      3600
     attacatata aatttgaatg cagagctttc tcgctcattg tcgctcgata tcatcgcatc      3660
     gcttatcgcg tccactctga catcagcct                                        3689
//
ID   Harbinger-1_LMi repbase;    DNA;    INV; 2663 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2663
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2982-2982 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(164..664,831..1085,1402..1866)
FT                 /product="Harbinger-1_LMi_1p"
FT                 /translation="MASDAELLFLCASAVNIIMKKENNGRKQRRWWVRNFL
FT                 SKRSSHGAYSSVMSDLKIQDTQGFKNFVRMSTTDFEILLNMTAQYYTMKDT
FT                 NFRDAVSPDEQLAVTLRFLATGDSYSSLMYMHRISKSKISEIIPKVCEAII
FT                 KALKKEIEVRTCYVYCFFYFQLSTINSIKAFWIFYVSQLPLHVFTERGELV
FT                 LFLVCVHSFFLTLTCVVLIWCIYFGLLSWWCSVKMYCLFFHLLMYPKGEKF
FT                 SVLYIFAGTENLLLTMPLHYKTYNETLPSNHDKDSIERVYNYRHCRSRRVS
FT                 ENAFGILSAVFRVLRKAIHLDPHKATIVTLCCVYLHNFLRRNRDARLIYSP
FT                 PGTFDYENTETGTVEPGRWRDQPPLAPLLRIGRNVAEDAKQVRNEFAAYFV
FT                 TAEGQVEWQHLFA"
XX
SQ   Sequence 2663 BP; 766 A; 538 C; 551 G; 808 T; 0 other;
     aaagctacgt tcacactgag ggatttgtcg cggaaatttg ttcccggcac aagtcgcgga        60
     gataagtatc tcggcacatg tatatcgcga ctttgttcag agacatgtgc ccggcacaag       120
     cagtgttctc actggcgaca tgtagccatc agtttcacgg aacatggcgt ccgatgcaga       180
     acttctattt ctatgcgcta gtgctgtgaa tataattatg aaaaaggaaa acaatgggag       240
     aaagcaacgc aggtggtggg tgcgtaactt tctcagtaaa cggagtagtc atggagccta       300
     cagttcagtg atgagtgacc tgaaaattca agatacacag ggtttcaaaa attttgttcg       360
     tatgtcgacg acggactttg aaatattact caatatgaca gctcaatact acacaatgaa       420
     ggatacaaat tttagagatg ctgtatctcc tgatgaacaa cttgccgtta cattacgatt       480
     tttagctact ggagattcgt acagctcctt aatgtacatg cacaggattt cgaaatcgaa       540
     aatcagtgaa ataataccaa aagtgtgtga ggccataata aaggcgctta aaaaagaaat       600
     tgaggtaaga acttgttatg tttattgctt tttttatttc caactaagta ctattaacag       660
     catttaaaac cacgttgatt tatagcaaaa catttattca gttaaaatat atacattctc       720
     cctctgcccc tcatttccgt cgatgttaat ttctgcaata acatttgatt cgtccatctc       780
     ttcaatttcg cttcaaatat gagatcctga attcttttct gtaatagtaa aaggcgtttt       840
     ggatttttta tgtctctcag ctcccactcc acgtatttac cgaaagagga gaacttgtcc       900
     tctttttagt atgtgttcac tcgttctttt taacactgac atgcgtcgtc cttatttggt       960
     gtatttattt tggccttctt tcgtggtggt gttcggttaa gatgtactgc ctttttttcc      1020
     atctcttgat gtaccctaaa ggggaaaagt tctcagtttt gtacattttt gcaggtaccg      1080
     aaaactgaag cacagtggaa gaaaatcgca agaaatttga gattcgctgg aactttcctc      1140
     actgcatagg ggctttaatg gaaaacacgt tcaaattgtt aatcctgcac tgctgaacta      1200
     taaagacact ttcagcattg tgctgatggc attagtggat gcggattacc agttattttt      1260
     gcagatgttg gagtgcaagg gcgtatttct gatggaggtg tatttaatcg tacaacttta      1320
     acaaggccct ccaagcaggt cagctgaaca taccagaacc ggaacctttg ccaggaagag      1380
     cagtgcccag tccatatgta attgttgctg acgatgcctt tgcattacaa aacatataat      1440
     gaaacccttc ccagtaatca tgacaaagac agcattgaaa gagtatacaa ttacaggcac      1500
     tgtagatcgc gccgagtgtc cgaaaatgca tttgggattt tatcagctgt ttttcgtgtt      1560
     ctacgaaaag ccattcatct cgatccccat aaagcaacaa ttgtgacttt gtgctgcgtt      1620
     tatctccaca acttcctacg aagaaatcga gatgctcgcc tcatttattc accgccaggc      1680
     actttcgatt atgaaaatac agaaacaggg actgtagagc ctgggagatg gagagaccag      1740
     ccaccacttg caccgctatt aagaatcggt agaaatgttg ccgaagatgc aaaacaagtg      1800
     agaaatgaat tcgcagcgta ttttgtcact gctgaaggac aagtggagtg gcagcatttg      1860
     tttgcttagt gttttaaata taatcatgac tggactatca agtttatcaa aaatgttcaa      1920
     gcactgatgt ataaaacata tttacattct tcattgttat ataatgaaaa tttgtaataa      1980
     tcatgaaaaa taaatatgca ctatcttacc tcaaacgtag ataaactcgt ctttggtttg      2040
     ttcacatcct tcagaaacag cagtgaactg taggcgtacc actttgaaat atacatatct      2100
     tctctgcccg atcctgattt cttggtagtt gttttattat gttcgcgaaa gaattgcgac      2160
     cgcaggttgt gcaatttgct gttcatttct tcatcggaag tgttgaacag caatgcaatt      2220
     tcgtgaattg catcgcgttt ggcgtttcgg tttttataat tcgcgcatgt gggatcccac      2280
     aacatgcgcc tgtcacggaa ttcatcgatt agtttcattg tattatactt cgtccactcc      2340
     atttcgccta cgaatacaaa acaagcttac gatttcacag aattcacgga tgtaaacaac      2400
     tagtcacgtg tacccaagat gcaacagcac gagtctgcct gtgaactgcg catgcgcagt      2460
     agaaaatgta cctggaattt gtgccgtgtt ttcgctcggc ggacggatac aggcacatgt      2520
     gccggaacag agtatttctc ggaattgtag cgttgatgtt gcaggtacat gtcgcaggaa      2580
     cttgcaacat gtgcccgatc tcatcggcta catgtgccag gcacaaatct ccgcgacaaa      2640
     tccctcagtg tgaacgtagc ttt                                              2663
//
ID   Harbinger-2B_DRh repbase;    DNA;    INV; 2950 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element;
KW   Harbinger-2B_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2950
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1386-1386 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3'-truncated. The 5' 838 bp is ~97%
CC   identical to the 5' 880 bp of Harbinger-2_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2950 BP; 822 A; 615 C; 628 G; 881 T; 4 other;
     agcctagtat ccagatcgac aaacgattac gctagcgtaa aaactttaat ctttccagtg        60
     tgaccaaaag tttgagagtt catcggattt aascgtgcta cggtcgtact gtcaatcagc       120
     tgggtttgtt gacaagcagt taaaattcaa atatcgtatt tgcgggagat aaaagatatt       180
     atcaaatacc ttggcaagac aagtctgccg ctgtacaaag aaatwasaaa acaatacaat       240
     ttaaatttaa cagttgtttt tttaatttac tgataattat ttgctaattt aaagttcata       300
     gctgcacttt tattgtgttt tttcgtacat tctggactta aaaaacagtt tgctctgaca       360
     agaggcaccc cagatagtat taatgttatt ttgtcctcac atgtaaacac ctgcaatcga       420
     cttttgtgag ttttttgagt ttttccctcc atttcttata atgttcagtg agaagcgcac       480
     gccaaaagat taaatttttt aatcttttcg ctagggttca cccaaagttc atttccgcag       540
     actggcaacg ctatggaatt ttctggtatt tttttcgtcg atcaggggac cgacgtgaaa       600
     aaaggcccga cgaaaagtga acgccagctg tttgcctctc gctctctctc atgactggcg       660
     tacggttttc gtcgatcagg atactaggct taagcctagt atcctgatcg acaaacgatt       720
     atgctagcgt aaaaacttta atctttccag tgtgaccaaa gtttcgagag ttcatccgaa       780
     ctgagcttac tacggtctta ctgtcaatca gctgggtttg ttgacaaaca aaaaagcaaa       840
     caaagttaaa tgaaacgaaa atgtcgagtt caaaaaacac aagcttgatt ttggttgtca       900
     gcatggcggc atgtattgtg gcattagagg aagaggacaa aagacagcgg ccgaaatatt       960
     gggtgagccc atatctgcag gaaagggccc ttaaaggccg atatgcttcc gacgtaagta      1020
     atactgttca ataatgtatt aatattcgtg cactaaaaaa tattttctta tcattttaaa      1080
     gtttcaaaac ttgttgcaga ctccctcaat gtttttcgaa aactttcaca tgcctcagaa      1140
     gagttttaac actctttttg gaatggtgga gcagtacctt ataccgaaac ggaacactcg      1200
     cccagatgct ataccaataa aagccaagtt ggccatcgtt ttagagtaat tagattttaa      1260
     atatttagtc ttagataaca atatatttat attttgtatc cttttattta gatttcttgc      1320
     ctctggagac ctgcaacgcc acattggatc aacttatcgg atcagtaagc aacattttgg      1380
     agtgattctc ctccaggtgt ctattgccat ttggactgct ttgcgggatg aattccccaa      1440
     gtggacgacg gggaatatgc tgatgtgggt taaaggcttc gaagacgaat ggaactttcc      1500
     taattgtatt ggagcagtcg acggaaagca tgtggcgata aaaggcccgc caaatagcgg      1560
     aagccttttt tacaattata aggtaagtac tttttaaatg ccaatagaat ttaataacaa      1620
     aatcgtttgt aatgtagggc tttcattcga ttgtgcttat ggcaatctgc aacgctcact      1680
     atcgcttcac ctacattgat gtgggggctt ttggtagcga aggagacatg aatgccttct      1740
     cccacagcgm tcttggcaaa cagttgctct tagaccagct gccctttccg gaggacaatg      1800
     ttataaacgg ccatcgaacc ccttattaca ttgttggtga tgatgcattc ccccttcata      1860
     agcgcatcat gaagccgtat agtggcaagg atctgcatag ggaggagcgg atttttaact      1920
     acaggctaag tcgggctcgt cgttgcattg agaacgcatt tgggattctc agcgctaggt      1980
     ggatggctgt acaacgaact ttgttaagca atccatgcaa agctcaaaaa atcattgtag      2040
     cctgttgtgc cttgcataat tttttgatgc gggagagtcc agcaacttac tcgatgcagg      2100
     agataccaag cactgtcctg accgacttgc gaccctgccg acgaggtcgc ccacaagact      2160
     tcagtaagga ggttcgaaac aaccttaaag aatatttaaa cggaagtgct ggatgttctc      2220
     aagtaccttg gcaagacgag tctgccggtg tgacaaagaa attaaaaaaa caataaaagt      2280
     tattttgcaa tgttaaatat tttttatttt tattgaatta gctggcgtct ttctcctccc      2340
     acagaagccg ggtcatcttc ctttcgactt cggcagcacg ttccggagga agcgtgctta      2400
     gaatcgactc ccagtaggca tacaccggcc ttggaggagt gggaagggta gccttttgtt      2460
     gctgctccag gaagttgccc agcatgtcgc acattttggc tgctggtgtt tcctccacct      2520
     ttcgcttctt ggcggtcctt cttcctccac cctttgaaag tataggaata tttcataaga      2580
     aattatatta tttaatagaa attgggcaac ttacatagga atacagttcc ttttgggcct      2640
     cagacagctc gacctccagc tccgcctccg cttccaaaaa gccaacttca acagggtctt      2700
     gagttcctca atggagtagt ccattgcttg tgctccgtcg ctctccgaaa acacagattg      2760
     ggttgttctg ttaaaaataa attatattag tataatgtaa aaaaattttg gccagaacct      2820
     actgcctctg cgtggataag tccggcagga agcccatgta gggggcgaaa tcccactctg      2880
     cagcacctgt tggcttctcc agtgggtctc ctccagcact tccactcttt ggctgcttgc      2940
     acttgtggta                                                             2950
//
ID   Harbinger-2N1_DTa repbase;    DNA;    INV; 1135 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-2N1_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1135
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6209-6209 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1135 BP; 360 A; 193 C; 175 G; 407 T; 0 other;
     aggcctcttt acacctcagt aggaattttt caaatggaat ttcatatgtt tcaagcccgt        60
     taacatagtc tgttgttatt tcggtgaaac aattttaaaa agctggcttg gtctgacaaa       120
     attgttgtat tcaaatgtac atttcctgtt attatttggt taaaatatct ctaaaaaatg       180
     ttgcaatgtc tcacaacatt taaaaaaacg taatttgcaa attaaaacta ttgtgtctgc       240
     ttttacaatg gatgatagat tttatttgaa tcttttctga gtgcattatt ggatctcact       300
     aattctatat tttttttaat cgtacgcact agcggtttta aaatcctaat atttacaaat       360
     aatattacat agctgcatcc atatattggt ttacgaatgg tttattgtta gatgatcaga       420
     aacaagttat attcccatgg tctgtgctat ggcagaacct ttgcctataa aaccatcctg       480
     ccaatgaaaa aatcgaagac aagttctaat tttacaatat atttattttg ctgcaccagt       540
     gataagacat aagttcattg gctgacttca gaaaatctcc tgtttgtatt atccacagga       600
     tctgtggttt tcttcatctt cttcttataa gccttgtttc cacccatggg ctattaaaag       660
     gaccgctttt tgaatgggag ggctgcatgg aatcctataa acaagtcagt gcgcatggtg       720
     tttacgattg aatcctcttt gttgcattgt ttttattttt tcgagctcca gatatttttt       780
     ggaaccacaa tcactttgac aacaaacgaa atgaacacca ttcatttcat ataacctctc       840
     atggaatatg tactcacaca catattccaa tcgagtcaaa taaaataacc ttaacagatc       900
     aaagttctgt tactgtcgag caaatgttaa attttacaag ggcttctatt caaaattgtt       960
     ttaatctatg ttaaacatat gaggcttttc ttagaatctt gaccaaattc catttgaagt      1020
     gtaaactcga aatgaaaaat gaaatagaaa atggaatcta ttccatctca gattttgaaa      1080
     tttgtatgaa aaattggatt ccatgtgaca ttccatctga actgtaaaga ggcct           1135
//
ID   Harbinger-2_AG repbase;    DNA;    INV; 4519 BP.
XX
AC   .
XX
DT   10-MAY-2011 (Rel. 21.07, Created)
DT   10-MAY-2011 (Rel. 21.07, Last updated, Version 1)
XX
DE   Harbinger DNA transposon - a consensus sequence.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4519
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 16(7), 1391-1391 (2016).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >96% identity.
CC   The 3' end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           2098..3006
FT                 /product="Harbinger-2_AG_1p"
FT                 /note="DDE-transposase."
FT                 /translation="IKKTKLSYERLLKYCFSFRYLSTGIPFKSLSFTYCIA
FT                 HNTIGLIVYETCEAIWNTFNEEFIPFPTTSAFRNVEKEFRHKWNFPNCIGA
FT                 IDGKHIRMKAPAFSGTQYYNYKKYFSLHLQAVADVNWKFIAIDVGEYGSRS
FT                 DSGVFNSSSLFELIRSNRLNIPPPKPLPGTTQRMPHVFIGDQGYPLKPFLL
FT                 RPFPDSEDPAKNYFNHLLSMARRCVECAFGLLVVKWRFLKQELQITPEHVS
FT                 IIVKTACLLHNMCIDFRESTELMNNINPQSNANRNRANNHPSQEATDIRNV
FT                 FKNYFYDRIYQ"
XX
SQ   Sequence 4519 BP; 1365 A; 920 C; 811 G; 1408 T; 15 other;
     ggcccgtggc aacgcttcat cggatgcgat tttatcggac gtgcgaatcg catgccgtgt        60
     caacgctctt ccgattcgca ttgcgatttt ttgagtgtgt ttgacatttg aagataaaca       120
     aaacgacaac aacacaaagc agcctctgaa taaaggctaa cacgctaaag ttaactttaa       180
     ataaatctac tcttagttat tggttactgc tagtggaaaa agggtaagat tatctatatt       240
     cattatttat ggtctgagaa aaatcataaa tataatgcta ttaattcata caactggtgc       300
     tgtccagcaa gctctagtat cgcgtcgttt agacacctaa cctctttcgc tgcaggtaaa       360
     atcttctgaa atctgattga attaactttt aagctcttkt tgagttctac ttgtcgatca       420
     tttcgtcaga tgccatgcca acaacactgc cagtatctcc agcgtttgct tctccattag       480
     ttgcagctcc tacacaacca tcatccggtt tatccgaatc atcatccgga ccacatagta       540
     tgatggattc tcatccttgg actgatgtta ttaatcgctc gtatcggatc aaaatcaaaa       600
     cggaagtttt tgcaaagctt gctcacgatt tcattatgtc gtaaacagtg gcggatttaa       660
     ctgtacgcgg actgtgcggc cgcgggaggc cccgtgtatg gtaattccaa cttaaagaac       720
     agtgagtaca ggagtctcat cgagagcttt tgtgctagat aggggcccca tggatgaagg       780
     gactcataag ctcacccccc accccccgcc gcaaaccatt aaagcgtgaa tgcacaatat       840
     cctcgacact accggggcct ccactccttt tgccgcttga gcccccaaca ctttaaatcc       900
     gccactggtc ttaaatctaa ccaattttcg caacatcatc aacgcatgca gctgcacttt       960
     aacgataaag ctacactaat tgttttaaag atatatagtg ttccaaaaca tcattcaatc      1020
     tataattgaa tatcatattc atcatcatat gcatcatcat cactgtaaca aatttttgtc      1080
     caaacttaac tcttatatgt tttgttttgt tttttttttt agatggattc agattctgaa      1140
     acggaactat acagttcgag catagctttg cgctacttac tattaaaaag aaggcgcgat      1200
     aaaaccaacg atctgtggga aaaacgtgaa aaaatcgggc aataccacac attgtttcat      1260
     gaacttttga aacaagaaga taaattcttc gagtttatga gagtttcaat taaaactttt      1320
     tacttcatac tgagaaggat agagcatctt ataacaaagc aacctacaaa caaaccatac      1380
     atttgtccag aggaacgatt gatgatcact ctcaggtatg tttaatagaa gcttcctaac      1440
     attgctactc cagctccgat tccggctgca tcaaaacgat ggttcgggtc ggagtcgttc      1500
     ggagccgtca agaactattc gggagccggt tccggacagc tttgaacgac tccgaacggg      1560
     tccggcagct gactaccggc tttggatcta taggtgcggt cggttctgag ttaagagttt      1620
     tgatcttccg gagcctwctg attttggtga agttattcgg aagcgattcc gagcttttat      1680
     tgaatttacc tatatctacc tattacatag tatgtaccta ttaaatatta tattcctcca      1740
     ttcccattga tgaattcatt tacactttcc tgattatctt ttttaacgga gattacaaat      1800
     tcaaaatcat gttgttgtgc tctacttatt atttaaaaaa atggagtagc caactagtaa      1860
     aaaactgtac tttaccagct tatgtaaatt aagctaactt gcgaatctga tccgcagact      1920
     gtttaccgat gcaagcacat ccatatgaat tctgctcgaa aaatttccat catatatgac      1980
     atggttgttt tccgaactcg ttagctagtt tatctcggta acattcgagc gatcgaaaac      2040
     tcgcaagcta agccatttat tttgataaca gcacctgaaa tctagatttt tttataaata      2100
     aagaaaacaa aattgtcata tgagcgttta ctaaagtatt gtttctcttt caggtatcta      2160
     tcgactggaa taccttttaa gtctttatca ttcacatatt gtattgctca caatacaatc      2220
     ggcctcattg tctacgaaac atgtgaggca atttggaaca cgtttaatga agagtttatc      2280
     ccgttcccta caacgtctgc atttaggaat gtggaaaaag agtttcgcca taaatggaat      2340
     tttcctaatt gtatcggcgc catagatggc aagcatatcc gaatgaaagc cccggcattt      2400
     tcaggtacac aatattataa ttataaaaaa tatttttctc tgcatttgca agcagtagca      2460
     gatgtgaatt ggaaatttat cgccattgac gttggtgaat atgggagtcg tagcgatagc      2520
     ggcgtcttta attcgtcatc attgtttgag ctcattcgtt caaatcggct caacatccct      2580
     cctcctaaac cactgcctgg tactacccaa agaatgcctc acgtgtttat aggcgatcag      2640
     ggttatccac taaaaccttt cttactgcgg ccttttccgg atagtgaaga tccggcaaaa      2700
     aattacttca accatctgct gagtatggca agacgctgcg ttgaatgcgc ctttggtttg      2760
     ttggtggtaa aatggcgttt cctcaagcaa gaactccaga taactccgga acacgtctca      2820
     ataatcgtca aaacagcatg cctgttgcat aacatgtgca tagattttag agaaagcacg      2880
     gaattaatga ataacattaa cccacaatcc aacgccaaca ggaacagagc aaacaatcat      2940
     ccatctcaag aggctacaga tattcgaaat gtcttcaaaa attattttta tgatcgaatt      3000
     tatcaataat gttcgatgaa gtaaaaacat acattgccaa ggattatcgt tataaaagag      3060
     acaatggctg gtattattga atccgttcgt agcggcggtg tacgtcctgm cattcatttt      3120
     cctaacgtac tagatggttg ctacagtkat ttaccgaggc gttgtaggac cgggctaaag      3180
     aaatgtgttt caagaatttc atgagaacgc cgtacgttcc cgctacgaac ggattcaatg      3240
     ataccagcca ataccattaa tccgttttta gtcagggtgc tcattgccaa tttattattc      3300
     gaaaaatatt aaggaaataa aatgataaag gatatatttt gaaaattcat aacaagttct      3360
     ttttattcat atcacaaatt caatttcagt cacamtaatt aaattattgt aactagtaga      3420
     gtaacactaa tacaacaact gtccacatgt ttataacaat cgtctctttg aatagacaac      3480
     acagactaac acgctcagca tggtactgtg ttgtctattc aacgagacga ttggtatcaa      3540
     catgtagaca gttgtgttct cactcaagct attttttttg gttttcttcg tttgttcttt      3600
     ttcttcgctt tgatttaatt acttggtaag cgaattctaa tatctcctca cttgcatcca      3660
     actgatcatt tagatcsggt aawgaatcaa ggagtgtaac aacactcatc attacgtggt      3720
     agttggagct tttttgttgt ctttgtttca aaagttcgtt kcgctccttc tccacattaa      3780
     ctatgtcctg cagcactcga tcatcctgtt tccgctttct gttgttttct gttgctctct      3840
     gtttatttgc cgggtccaaa tgmtctagaa gatcatcgct ctcttccaaa tattcgatac      3900
     twtcatctgt ttgtatgatg ataaagagaa atagaatatc atatwataaa ataaaatagt      3960
     ataaaataaa aaatattacc ttgccaagat gactccagat tcccaactct gggtcgggac      4020
     gcaagcatgt ctttgaggaa gctcatctgc tcgtaaaact tccatcggac atgcttgtat      4080
     cccgacccag atggctgatt tatttcagct agtttgcggg cgaatgtgtc ccgcaagttt      4140
     cgccatttat ttttggcmac catatctgca ataaataaaa atatagttac aaaccttttt      4200
     ttaaattaaa aataaagtac agtggaccct tgagtaacaa gttttgttta gtttagcgaa      4260
     ccaatcgtag tacaaaagaa aagagattat aagagtcctc tatattctca tatgagcttt      4320
     atcgaaasta aagtgtcttt ccgtttcgca gaaacsagaa actttttgga cataccggta      4380
     aaatatgtac aaacgaaaaa agtwggactg tgctctgaca ctattgttct ttggataaga      4440
     tgcgttgttc gattcccgtc tcagtcaatg aaatcgtaaa ctgagaaaaa aaaaaataaa      4500
     ggaaatcatt ctgataata                                                   4519
//
ID   Harbinger-2_DRh repbase;    DNA;    INV; 1441 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1441
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1387-1387 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 23-bp TIRs. TWA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1441 BP; 418 A; 278 C; 263 G; 482 T; 0 other;
     agcctagtat ccagatcgac aaacgattac gctagcgtaa aaactttaat ctttccagtg        60
     tgaccaaaag tttgagagtt catcagattt aagcgtgcta cggtcgtact gtcaatcagc       120
     tgggtttgtt gacaagcagt taaaattcaa atatcgtatt tgcgggaaag agcctttaaa       180
     agatattatc aaataccttg gcaagacaag tctgccgctg tacaaagaaa ttaaaaaaca       240
     atacaattta aatttaacag ttgttttttt aatttactga taattatttg ctaatttaaa       300
     gttcatagct gcacttttat tgtgtttttt cgtacattct ggacctaaaa aacattttgc       360
     tctgacaaga ggcaccccag atagtattaa tgttattttg tcctcacatg taaacacctg       420
     caatcgactt ttgtgagttt tttgagtttt tccctccatt tcttataatg ttcagtgaga       480
     agcgcacgcc aaaagattaa attttttaat cttttcgcta gggttcaccc aaagttcatt       540
     tccgcagact ggcaacgcta tggaattttc tggtattttt ttcgtcgatc aggggaccga       600
     cgtgaaaaaa aggcccgacg aaaagtgaac gccagctgtt tgcctctcgc tctctctcat       660
     gactggcgta cggttttcgt cgatctggat actaggctta attaactaca atcgataatt       720
     cagcgcagtt tttcactttt taagcctagt atccagatcg acaaacgatt acgctagcgt       780
     aaaaacttta atctttccag tgtgaccaaa attttgagag ttcatcagat ttaagcgtgc       840
     tacggtcgta ctgtcaatca gctgggtttg ttgacaagca gttaaaattc aaatatcgta       900
     tttgcgggaa agagccttta aaagatatta tcaaatacct tggcaagaca agtctgccgc       960
     tgtacaaaga aattaaaaaa caatacaatt taaatttaac agttgttttt tttaatttac      1020
     tgataattat ttgctaattt aaagttcata gctgcacttt tattgtgttt tttcgtacat      1080
     tctggaccta aaaaacattt tgctctgaca agaggcaccc cagatagtat taatgttatt      1140
     ttgtcctcac atgtaaacac ctgcaatcga cttttgtgag ttttttgagt ttttccctcc      1200
     atttcttata atgttcagtg agaagcgcac gccaaaagat taaatttttt aatcttttcg      1260
     ctagggttca cccaaagttc atttccgcag actggcaacg ctatggaatt ttctggtatt      1320
     tttttcgtcg atcaggggac cgacgtgaaa aaaaggcccg acgaaaagtg aacgccagct      1380
     gtttgcctct cgctctctct catgactggc gtacggtttt cgtcgatctg gatactaggc      1440
     t                                                                      1441
//
ID   Harbinger-2_DTa repbase;    DNA;    INV; 2765 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-2_DTa;
KW   autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2765
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6258-6258 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           394..1452
FT                 /product="Harbinger-2_DTa_1p"
FT                 /translation="MINNPPVFLENFRMSYENFMNIFSKIEKHLQPLRETR
FT                 ADAIPPLTKFAIVMEYFASGDIQRHVTSTYRISKASMSGIVIAVSDAIAIE
FT                 LIGEIPAWEKNRMLNYATNFESEWNFPNCIGAVDGKHIAVRAPASSGSAFH
FT                 NYKGFHSIVLMAICDAKYAFTYINVGAYGSEGDVNVFSSSQFGRDILGDRL
FT                 EFPNDRIINGNRIPYFLIGDDAFPLCKRIMKPYSGTNLGNSERIFNYRLSR
FT                 ARRCIENAFGILSWRWICMQRTLICQPKTAQKVTTACCLLHNFLIRNATVD
FT                 YIGGFEEQSIEHNNLTSLQPYIGRPNDYGKMIRNQLCAHINSNAGAVPWQN
FT                 RAAFVQETNE"
XX
SQ   Sequence 2765 BP; 814 A; 553 C; 521 G; 877 T; 0 other;
     aggcctcttt acacctcagt aggaattttt gaaatggaat ttttcttatt tcatgtctgt        60
     ttacatttcc tgttatcatt ctgaaacgta cttgccctgc caaattcgtt ctatcaaatt       120
     taaacggaaa aaacgatttg tattctttta gaatggatga tgagtggtac gtatttagat       180
     acattctgag cgcaataatc tcgatggcaa cttatacact actgtcttca ttttagtgta       240
     ctattactgc aacttgcaat taataatctg gctatcgcgg cgttgttgaa aaaaaaacgt       300
     gaaaaaaacc aaagaagcaa acgcaagtgc tgggtcaatc cctatcttaa ggatcgaaac       360
     acaaaaggca gattcgctaa ggactttgtc gatatgatca ataacccacc agtgttcttg       420
     gaaaatttcc gaatgtctta tgaaaatttt atgaatattt tttcgaaaat tgagaagcat       480
     ttgcagccac tacgggaaac tcgagctgac gcgataccac ctctaaccaa attcgcaatc       540
     gtgatggaat attttgcatc tggagatatc caaagacatg taacatcaac atatcgcatt       600
     agcaaggcca gtatgagtgg tattgtcatt gctgttagtg acgctattgc gatagagttg       660
     atcggcgaaa tcccggcctg ggaaaaaaat cgtatgctta attacgctac caacttcgaa       720
     agcgagtgga attttccaaa ctgtataggg gccgtcgatg gcaaacatat tgctgtccgg       780
     gccccagcaa gcagtggtag tgcctttcat aattataaag gatttcattc catagttctt       840
     atggccattt gtgatgctaa atatgcattt acctacatta acgtaggagc gtatggcagc       900
     gaaggtgatg taaatgtatt ttcgtcatca caatttggaa gagatattct cggcgacaga       960
     cttgaatttc caaatgaccg catcattaat ggaaatcgaa ttccgtactt tttaataggt      1020
     gacgatgcat ttccactttg caagagaatt atgaagcctt atagcggaac aaatcttgga      1080
     aactcggagc gcatcttcaa ctatcgcttg agccgtgctc gtagatgcat agagaacgct      1140
     tttggcatac taagctggag gtggatatgc atgcaacgaa ctcttatttg tcaaccaaag      1200
     acagcacaaa aggttactac ggcatgctgc ttacttcata attttttaat aagaaatgcc      1260
     acagttgatt acataggcgg ttttgaggaa caatcaattg aacacaacaa tttaacatcg      1320
     ctgcagccat atattggcag gccaaatgat tatggcaaga tgattagaaa ccagttatgt      1380
     gctcatataa attcaaacgc aggcgccgta ccatggcaga acagggcagc ctttgtccaa      1440
     gaaaccaatg aatgagaaac gttccacata taaaataaag aagacacaat tttaattttt      1500
     attatttttt ttatttttgg cagcacgatc tttttttcca atttcagcta ttgctgccgt      1560
     caccttcacc tgcacttgtt gtagggcctc ctcggaaaag tcctccatca tcttgtccca      1620
     aaaagaaaac atttcgacat ttttcaggga tccagttgtc ttgttgtctt gcttggtctg      1680
     aaccaccgat atgaggtcct tcgctgactt gagcagttct ccaatttcgg ttcctattgg      1740
     gtcactgttt ttcttcttct ttggtctctg cgatttgtcc gatcacaatc aataaagaat      1800
     aaataggaat tttatgaagc ttacataatc atacgaagcc tcctcagtgt cctcttccgg      1860
     gctatcacaa ccacgttttt ctgaagtgga tggggcgtgc acagaagcaa atgtcctgaa      1920
     aaaataatat taataacaat ggtttcagtt tgtgtaactt actttctttt gtgagacagc      1980
     ccctgcagaa atgacatatg ctctgccatc tcccagtcta tctcggggcc cgtcttttcg      2040
     gattcgacta ggtttatatt ctttgagcca ccagcgctac cactttttag aatctgtgtt      2100
     gctttcttct tcgtgtgata gcgaaggcta tcacgaagtg aaagccaggt tgacttgacc      2160
     tcgttgactg caaagtaatg tttaatgatc acatccaatt tttattgata taaaaattcc      2220
     tcaccttctt tgttggtggc agcactaacg gctgcccaag cacttctaac agcattatta      2280
     ttgctatggt tcttgttggt taagtcccat atctccgggc gtgattttac ttcttctatc      2340
     agttgaatgg tttcctcgcg gctgatgctt tgattcctct ttttgttttt tcttgctccc      2400
     gacatttttc aaactcataa acactttgac aggaaaggga atgaacacca taaatttcat      2460
     atgtactctc atggaatatg tacccactca catattccaa tcgagtcaaa tgtaatgata      2520
     ttaacagatc gaatttctgt tactgtcgaa caaatgttaa attttacaag ggcttctatt      2580
     caaaattgtt ttaatctatg ttaaacatat gaggcttttc taagaattct gacaaaattc      2640
     cattagaagt gtaaactcga aatgaaaaat aaaatggaaa atggaatcta ttccatctca      2700
     gattttgaaa tttgtatgaa aaattcgatt ccatgtcaca ttccatctga actgtaaaga      2760
     ggcct                                                                  2765
//
ID   Harbinger-2_LMi repbase;    DNA;    INV; 1813 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1813
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2983-2983 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(279..563,533..931,919..1218)
FT                 /product="Harbinger-2_LMi_1p"
FT                 /translation="MNKRSTHGEFALTSEFSDKQFPNYFRLDQSQFHEVHE
FT                 LMRKYIFSEGCNAHCQCVIVSKWLHHSYIQKFKVYVISMPSPSPDLISILS
FT                 VVCVLITYSFCSLCTYYVNLILYVIMMTEHLQRIPCIFLKYIFSHRYLATG
FT                 ERKVLPTATEWAIELCQILLMQSHMRCGTPCNHYIYHNPQHRHGKQSENVS
FT                 NSDDSFHTVSELSTESILWLRSQQPVVHHSSTTDLHILLTHSVVLMATLDA
FT                 NYKFITIDVGSMGRFSDGNIFSSITLAKKLRRQNLQVPPHSEQELPLIPNN
FT                 SRSALSTFVVREKFTEYLNTVGRASRQTDSITKGKY"
XX
SQ   Sequence 1813 BP; 524 A; 411 C; 410 G; 468 T; 0 other;
     ggccaggcgc acattgggac gcagctgatg cagggcaggg cagggcagca cagcgaagga        60
     aacactttgc gacacagcgt ctgcgcatat tgggagacag tttctagcca ttgtcgcaca       120
     gtcgttcctt gttgaaccag tgcacagtgt ttccttgtac agttatgggt gcactcatga       180
     accttagttc agagtcggat tctgatgagg aaatggacat gctgatatta ttatataacg       240
     cttcataacg cgagaaatca gaatggaaaa gcagtaacat gaacaagaga agcacccatg       300
     gcgaattcgc tttgacatca gagttttctg ataaacagtt cccgaactac ttccgtttag       360
     accagagtca attccacgag gttcacgagc tgatgagaaa atatatattt tccgaaggat       420
     gtaatgccca ttgtcagtgt gtcatagtca gcaaatggtt gcatcacagc tatatacaaa       480
     aatttaaagt ttatgtaatc tcaatgccct caccttcccc agaccttatt agtattcttt       540
     ctgtagtctg tgtacttatt acgtaaactt aatactgtac gtgataatga tgacagaaca       600
     tctacagcgc attccatgca ttttccttaa atacattttt tcccacaggt atttagccac       660
     aggagagaga aaagtattgc ctacagctac agaatgggcg atcgaattgt gtcagatact       720
     gttaatgcag tctcacatgc gatgtggaac accatgcaac cactatattt accacaaccc       780
     acagcacaga cacggaaaac aatcggagaa tgtttcgaac agcgatgaca gtttccacac       840
     tgtatcggag ctctcgacgg aaagcatatt gtggttaaga agccagcaac cagtggttca       900
     tcattcttca actactgact tacacattct gtagtgctaa tggctaccct cgatgcaaac       960
     tacaagttca tcactattga tgtggggtca atgggcaggt ttagcgatgg gaatattttt      1020
     tcaagtatta cgttggcaaa gaagttacgg agacaaaatt tacaggtacc tccacattct      1080
     gaacaagagc ttcctttgat acctaacaat agtaggagtg ctctaagtac tttcgttgtg      1140
     agagagaagt ttactgagta tcttaacaca gttggaagag catctcggca aacagacagc      1200
     attacaaaag gaaaatacta gagaaaacaa ttgacatttt tacgactcta atttgaatag      1260
     acaaattagt catggacata aagtgaagtt ccctgtaatc atgaaagcac gttgctttga      1320
     tgtttaacac gatgtacgtg aataaaactg aagtaataga gcataatacg taccattctg      1380
     catatccaga tcttttgcaa tagaaaccca aatttgttgt tttaatttgg ttttcatgta      1440
     gtcattgtga ttggtatcgt acaaaaccag gttcggggga actgcatcaa ttacgttttc      1500
     ctccatgtca aacatagact cgtgaaaacg cgcggtaagc agctggagaa gactggcagc      1560
     gagcgggcag tggggcagca gaccgtaccc ccagcccagc aggtggcctg cctgccgcca      1620
     aagctgcgcg gcactcgcac agcaatctgt gtcccggaca ctgtgcggcc caggcggagg      1680
     caggagctgc gctgccctgg cctgccctgt gccgcaactt gcgctgctgc atctaaaccc      1740
     ggcagtcaca gaaacctgtg ctgtgctgcc ctgccctgcc cttcgtcgcc tgcgtctcaa      1800
     tgtgcgcccg gcc                                                         1813
//
ID   Harbinger-3N1_DTa repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-3N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-335
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6259-6259 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus, 3-bp TSDs.
XX
SQ   Sequence 335 BP; 119 A; 75 C; 51 G; 90 T; 0 other;
     tagtctagtc acactgtgtg gggtaaccta tcgagtgagc caataacccg attactccaa        60
     aaaagtgttt ccacttggtt aactccaaat atcgagtaat gacatctagt gtttgttgtt       120
     tgtgttgttc atttgactag ggatggacct tcaacgatag gaaataaata caaaatatac       180
     cgaaatatac aaaaaaatac tccgaaatac caaagaccct aaaagtaccc cacttttgcc       240
     cacatctagt tgcctataca catcctatgt aaaaaaaaca gggttatgtc aataacccca       300
     taactccata actccacccc agtgtaaata gacta                                  335
//
ID   Harbinger-3_DTa repbase;    DNA;    INV; 2504 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-3_DTa;
KW   autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2504
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6222-6222 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(161..223,361..592,820..1472)
FT                 /product="Harbinger-3_DTa_1p"
FT                 /translation="MEKKDIEALLIAVADHYDKTMPRFGTFWEQDVPNNSE
FT                 EFFKEHFRLEKRTFDTLVERLPNLRKKDTPFRMAIPLEKRIAIALYTLGSS
FT                 AEYRTIACLFDGCHIEVRPHAKDAVDYHNYKGWYSTVLFAMVDYRYRFSYI
FT                 SVGSPGRCHDSKIFENSNLKRIIEESELMDEHSRIINDVEVPVLILGDSAF
FT                 RFSKNLMKPYPFSVEANEEQKAFNYNLSKTRRVVENAFGHLKARFRRIGKG
FT                 LDNRVEKSSQIISCCCILHNFCIAHNSFVPESWQQDAELVQRQDTPEHELW
FT                 LGNTNERAETIRRALAMEFLNRNA"
FT   CDS           join(2056..2031,1963..1842,1777..1545)
FT                 /product="Harbinger-3_DTa_2p"
FT                 /translation="MENIKKKYRVELAKVGPSGGTPSTWEYFERVAILMQG
FT                 SRAVDVHPTDSTDFSSFGSDGQGDEMDESTATDFDGPSGSQAKRRKTSKDD
FT                 EFLQIEKRKLEVMEEIAKESADFHRKVLGLLQTRASDED"
XX
SQ   Sequence 2504 BP; 723 A; 520 C; 506 G; 750 T; 5 other;
     tagtctagtc acactatgtg gggtaaccta tcgagtgagc caataacccc attactccat        60
     aaaagtgttt ccacatggtt aaccctattt ttcgggttat gtcagttagc ctttgttttg       120
     attttcattt gtgacaaaat tcagaggaaa attttaaaat atggaaaaaa aagatattga       180
     agcgttgctg attgctgtgg ctgaccatta tgataaaaca atggtaaggc tgatgagctt       240
     agcagggatg tccatagaat ccttccggaa ctttagaagt cgtccatctc ggagtgtttg       300
     gaccttggta ataaattaat tagttttcgc agacgtcttg ttaattttta tttaaaccag       360
     ccacgatttg gaaccttttg ggagcaggat gtacccaata attcggaaga gttcttcaag       420
     gaacattttc gcttggaaaa aagaactttt gataccctag tggaacgcct cccaaacctc       480
     cgaaagaagg acacgccatt tcgtatggca attcctttgg aaaagagaat agcgatagcc       540
     ttgtacactc ttgggtcctc tgctgagtac cgtacgatag cgtgtttgtt tggtgtgtcc       600
     aagccgatag tgtgtcgaat ccttcatgag tttacgcggg aagtcattgt taawcttagc       660
     tccggagtac cttccgcctg cctttttaac ccaggaggcc attttagaaa acgtaaaggg       720
     ttttgaggac atgggttttc cacaatgctt tggagcmatt ggcaagtgca tattgaaact       780
     gtcgattata tatacttata caaaaactat tcctaataga tggctgccac atcgaagtgc       840
     gacctcatgc taaggacgct gtggactacc ataattacaa gggttggtat tcaaccgtgc       900
     tttttgctat ggtcgactat cgctatagat tttcctacat aagcgtcggc agtccgggtc       960
     ggtgccacga ctcaaagata tttgagaatt caaatcttaa gcggattatc gaagagtctg      1020
     agttaatgga tgaacattcc agaataatta atgatgtcga agtccctgtg cttattttgg      1080
     gagattcggc atttcgtttt tcgaagaatc ttatgaaacc ctatccgttt tccgtagaag      1140
     ccaacgagga acagaaggct ttcaattaca acctgtcaaa gactagaaga gtagtggaga      1200
     atgcttttgg ccacctcaag gcacgatttc gaaggatcgg aaaaggacta gacaacagag      1260
     ttgaaaaatc ttcccaaatt atatcctgtt gctgcatcct gcacaacttc tgtatcgccc      1320
     acaatagctt tgtgccagaa tcatggcagc aagatgctga attagtccaa agacaggata      1380
     ctccggagca tgagctttgg ctaggaaata caaatgaaag agcagaaacg atacgaagag      1440
     cccttgcaat ggaattctta aatcgtaatg cctaattgcc taatagcttg aataaataaa      1500
     aattactaaa acaaatacta ttttaattta tttattttgt attaatcttc gtccgaggca      1560
     cgcgtctgta gtaaacccag caccttgcga tgaaaatcgg cagattcttt ggcaatttct      1620
     tccattactt ccagcttcct tttttcaatt tgaaggaatt catcgtcctt acttgttttg      1680
     cgacgctttg cctgggagcc cgaggggcca tcaaagtcag tggcagtgct ctcgtccatt      1740
     tcgtcgcctt gcccatcgct gccgaagctt gagaagtctg caaaaatgtc aatttattag      1800
     tatagttgag taattcttat gtttactgcg gtatgcgtta cctgtgctgt cagttgggtg      1860
     cacatccact gctcgcgacc cttgcatcag gatagccacc cgctcgaaat actcccatgt      1920
     tgagggggta ccccccgaag gtccaacctt cgccagttcg actctgaaag caggtcgaag      1980
     aacaaaaatg ttaatttatg ttatgtgtat ccctatttaa agttacatac ctgtattttt      2040
     tcttaatgtt ttccattttt tgttttacct ccacatgtga ksggccgaaa tccttaaggc      2100
     tgttggccat mtccttgtat atgtgcgtgt tctttcgcac accacgaaaa ccatccatat      2160
     tatcttgcca taggtcgaag agagttagga cggcctcatt cggccacaca aatcgggaac      2220
     ctaataataa taaaggcttt aaactaatta ataaaataat taaatatatt ttcttacctt      2280
     tttgtttcga catggtaatc agaacagctt tgcttgaatt tttcactagg gatgaaccgt      2340
     caacgatagg aaaacaaata cgaaatatac caaatatacc aaagacccta aatgtaccct      2400
     actttttccc tgctctagtt gcctatacaa aaactatgta aaaaaaacag ggttttgtca      2460
     ataaccccat aactccataa ctccacccta gtggaaatag gcct                       2504
//
ID   Harbinger-3_LMi repbase;    DNA;    INV; 2898 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2898
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2984-2984 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1207..2019,2056..2361)
FT                 /product="Harbinger-3_LMi_1p"
FT                 /translation="MPSSPEEWKTISQEFEDKWNFPNCVGAMDGKHVAITC
FT                 PPNSGSKYFNYKHFFSIVLFAVVNANYQFIYVHTGCQGRISDGGVFRHTAF
FT                 GEALLNQSLNLPEPVPLPGREMPTPFVFTADDAFPLMENIVKPFSSDVAPH
FT                 SIKRVSNYRISRSRRTVENTFGLLVAVFRILHKTIDLKVENTAKIVLACAF
FT                 LHNFLRRNAQSQMLYSPPGVFDSEDADTGRVVPGSWRNNDVNIQGLQQVPR
FT                 NPSTRAKEVREEFMNYFVSDQGRVAWQDVYIKVFAYLFICVYAVKPRFRHI
FT                 PRQYETDAIVGEPRGRRRATCTSTFLLMFLCLAFSVGSKTSKFLVCVLNCN
FT                 AKFVSNCLPTIFFHIPVFICIAFYVPQLRT"
XX
SQ   Sequence 2898 BP; 874 A; 627 C; 547 G; 850 T; 0 other;
     aaggtacgtt tagatgggca atgaaaattg catattgtcg acaatatatc ccggaaatgt        60
     tgtcgggcaa cattgcagcc acatgtattg cagcaacaca agtgacaaca catcggcatc       120
     tattgcccag caatgtttgc ggcaactaat ttccgggcag aggctacaca atttcataca       180
     aaatggatga gtgcgacgtt atagaagtga gtgcggctct cctactttta catgaaacaa       240
     gtgttaatgc tattcgaaac aaaaagaaga gaaatcggac tctgtggatg cgtccttttt       300
     tgagtaggcg gagtaattca ggaaatttaa ctcgtgagtt aatgctagat acgtacctgt       360
     tccagaactt tactcgtatg tctaaaaacg atttcgaata tctcgcccaa ttaattggtc       420
     cgaagatagc taaatccaat acaaacatga gagactgtat tccagtaaca acacgacttg       480
     cgatcacact tctttagcta ctggagactg taagtcacta ttcttccatc aatcttgtgc       540
     cagaagtatg catgctttag tagaaggact gaaatacttg ttattatatt ttatttaaca       600
     cacacacaca aatacaatta ctgatacaca tgttcgtcat cgtctataac gactgttgca       660
     gcaatgatgt ctgcatatgc attttcctca ttgtttcctt ccacactttc ttcataaata       720
     acatttgccg agctgtatga cgtcgactgt tgcccacttt cgtactgtat catcctcaaa       780
     tccgcttcgt ataataattt actaatgttg aactcaacat ctgctcggat tactttgttg       840
     tagcccaata acttctctgc tacattatct ccgaaacccg aaaacggatt cttccgtttt       900
     cgcgaagcat tgttgacaat gcaatagcct tttgcacagc ttcactgtgc tcctcagatg       960
     ctgtggacac atctccggct ttttcgtggc tgcggctgtg tctgtgctac cggtgtatca      1020
     agtgacaaat ccacctcctc ttccacttca gtttccaact cggcctgaaa acaaacagta      1080
     taaaaattag aaattgctaa gcataaagca gtgttatgtt acatttgaaa tacaaaatta      1140
     actttttaat cattacatat ctagtagaga ttttgtattt attgcagtta ttcattaatt      1200
     ttctagatgc catcatctcc tgaagaatgg aaaacaattt ctcaagaatt cgaggataaa      1260
     tggaattttc ctaactgtgt aggcgctatg gatgggaagc acgttgctat tacgtgccca      1320
     ccaaatagtg gtagtaaata cttcaactat aaacattttt tcagcatagt gttgtttgca      1380
     gtagtgaatg caaattacca atttatatac gtgcacaccg gatgccaagg gaggatctca      1440
     gatgggggag tttttaggca cactgcattt ggcgaagcac ttcttaacca atcactgaat      1500
     ttgccagaac ctgtgcctct tccagggagg gaaatgccaa ctccgtttgt atttacggca      1560
     gatgatgcgt ttccattaat ggaaaacatt gtgaagccgt tttcttcaga tgttgctccc      1620
     cattcaataa aacgtgtgtc caattatcgg atatcaagat ccagaagaac tgtagaaaac      1680
     acttttggat tactggtggc agttttccgt atccttcaca aaaccataga tttgaaagtg      1740
     gaaaatactg caaaaattgt gttagcttgt gcatttctac acaatttttt gcgacgaaat      1800
     gcacagagcc aaatgcttta ttcacctcca ggggtttttg acagtgaaga tgcggataca      1860
     gggagagtag taccaggttc ttggcgaaac aacgacgtca atatacaagg cctccaacaa      1920
     gttccacgaa acccaagtac aagagccaaa gaagtacgag aagaatttat gaattatttt      1980
     gtaagtgatc agggtcgggt agcctggcaa gatgtatact aaattaatgt acaagcaaat      2040
     ttatgtttat attgaataaa agtttttgct tacctcttca tttgtgttta tgctgtcaaa      2100
     ccccgcttca ggcacatccc tagacagtat gaaactgatg ctattgtagg cgaaccacgt      2160
     ggaagaagga gagccacctg cacttccact tttcttttga tgtttctttg cctcgctttt      2220
     agcgtaggtt cgaagacttc taaatttctt gtatgcgtcc tgaactgcaa tgccaaattc      2280
     gtcagcaact gcctgccaac tatctttttt cacattcctg tctttatatg tattgcattc      2340
     tacgtcccac aactcaggac gtagatgaat agaattaata aatgagattg ttttctcgtt      2400
     cgaccacttt tccatatctg acagaacaaa aactcaagac gacaataact gtaagaagtc      2460
     ttccttcctt ccttccttca aaacagtcac ggtaagctcg aaaacaatgc accaatatag      2520
     taactataaa catcaatact actttcaaaa caaaccagcg cgcgcaaact ttcgaagcaa      2580
     caaaagcgaa acgatactct gttttcgtga ctgcagcgct gtcggtgaga gaagcacaaa      2640
     cagccttgag agcgagagga aagcatttac agacaaggac cgagataggt attgccctgc      2700
     aatacgaaat gttctccacc gttcccggac aacacggcaa cccctcggca atccctcggc      2760
     aactacctgc aacatcagca atattgaccg tccataccga aatattgctg tgtattgcag      2820
     tcatattgca gcagtgttga cagcaacacc atttcagcta aatatttagg taaaatgttg      2880
     cccgtctaaa cgtacctt                                                    2898
//
ID   Harbinger-N1B_DTa repbase;    DNA;    INV; 129 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1B_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-129
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6207-6207 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 129 BP; 44 A; 22 C; 23 G; 40 T; 0 other;
     gggctagtac tcaacccaac aaaaagtcgt ccaaaacaaa aaacttcata tgaaaaaaac        60
     gtcaagaaat tttgtttcat atgaagtttt ttgttttgga cgactttttg ttgggttgag       120
     tactagccc                                                               129
//
ID   Harbinger-N1_AAe repbase;    DNA;    INV; 1829 BP.
XX
AC   .
XX
DT   30-JAN-2019 (Rel. 26.01, Created)
DT   30-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1829
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1829
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 149-149 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 3-bp TSDs, usually TWA.
XX
SQ   Sequence 1829 BP; 518 A; 365 C; 432 G; 514 T; 0 other;
     gagcagccgt aacggtgcgc gactaaacta aattacatag cgcagtatca ttacgctgat        60
     ccgtaccggg cgctgctaac cggggtagca aaatgacagc gctgccttcg gaaagcatcg       120
     ggtgagcaaa tttagcagcg cgatagttgc gctgctattc gatttgaatt caagcatacg       180
     gtgtgggata tgaaattctg gttgaagttt tggaaatctg atgcatgatg cgcatgaagt       240
     agaaatttca aaattttggg aattcgggta aaccttcaag attttgataa gaatactaca       300
     cgcaaaaaaa ttgtgcggta aaaactacca ttttaggggg ttaacttaag cgttcgcacc       360
     ggcaattttc agcagaccag aaatgcgctt gattttacca tgtctgtagt cgaaatcaga       420
     ttgttgtaaa ttatttctgt caaacgtacc agtaatgtgg tggggtgtac cgtaaacata       480
     gtaaattggt ctgaaattcc atggtagttt caagaatggg cgtagtcagc taaaatagta       540
     attttaaccg cggaattttt ttccgtgtag gaatctgatg cagttattgg aaatccgata       600
     gaagtttatg aaatattcga aaatcctcgt aagaatttat cgatttcgga gtattatggg       660
     attttgggat tccgactgga atccttagaa ttccgactgg aatccacggg attccgcctg       720
     gaatcctcgg gatttcgact ggaatcctcg ggatttcggc tggaatcctc gggattctga       780
     ctggaatgga aagagatttt gataaaaata ccgactggaa tccttgggat tccgactgga       840
     atttttggga ttccgactag aatccttggg attccgactg gaatcctccg aattccgact       900
     ggaatccttg gaattccgac tggaatcctt agaattccga ctagaaacct ccgaattccg       960
     actggaatcc ttgggattcc gactggaatg gattctgaga attccgactg gaatccttgg      1020
     aattccgact ggaatccttg aattccgact agaatccttg ggattccgac tggaatcctt      1080
     ggaagtccga ctggaatcct cgggattccg gctggaatcc ttgggatatc gtctggaatc      1140
     cttgggattt cggctggaat cctcgggatt ctgactggaa ttggaaagag attttgataa      1200
     gaataccgtc tggaatcctc cgaatttcga ctggaatcct ccgaattccg actggaatcc      1260
     ttgggaatcc gactggaatc cttggaagtc cgactggaat cctcgggatt ccggctggaa      1320
     tccttgggat atcgtctgga atcctcggga tttcggctgg aatcttaggg attccggctg      1380
     gaatcctcgg gattcagatt agagtcctcg ggattctgac tggaattcca gtcggaatcc      1440
     caaggattcc agtcagattc ataataatta cggtcaaatt tgcaatattt cttgtaggat      1500
     ttacaaggat tccggtagaa ttggcaaggg ttccaatcaa attagcatcc agttggattc      1560
     ataaacaatc tcaaaaattt ccgatggaat tctaataatt ccgcaccaga atataataga      1620
     tattccagca gagttacaaa aattcccaac ctgaattgat caccattatt ttcacaactc      1680
     atatgttaac ccaaaaagca acgaccggta cggtaacgag ttactaaata tggtagccac      1740
     cggtgtgaga atgagtgact aaactaaaat gacaactctg ggggtgatca ttttaatcac      1800
     ccaaatagtc gcccccgtta aagatgctc                                        1829
//
ID   HARBINGER-N1_AG repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 4)
XX
DE   A non-autonomous DNA transposon: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   HARBINGER-N1_AG.
XX
NM   HARBINGER-N1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-356
RA   Jurka J.;
RT   "Non-autonomous Harbinger-like DNA transposons from African
RT   malaria mosquito.";
RL   Repbase Reports 9(2), 639-639 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 356 BP; 104 A; 79 C; 74 G; 98 T; 1 other;
     aaggccgggc tacattgatc gtactcgcag gtgtaatttt gattttcact agcgcacctg        60
     gcggcggctg accgaagcat ttttccaaac aatttggagc cgcttcagaa aatatgttat       120
     ttttccatgt tttttacttt aactggactg gaaaagcttt gtaattgata gatgaatatg       180
     ttgtgcacgt atttcagcca ttttcgcatc aaaaaacgat ggaaaaaaca acttaawttt       240
     gagatccggc acgaccattc cctcgatgac caaaaaaagc ttccaccagc cgccgccaga       300
     tgcgctagtg aaaatcgaaa ttacactagg gagtacgatc aatgtagccc ggcctt           356
//
ID   Harbinger-N1_BM repbase;    DNA;    INV; 658 BP.
XX
AC   .
XX
DT   17-AUG-2012 (Rel. 20.10, Created)
DT   17-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Harbinger-like DNA transposon: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-658
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from silkworm.";
RL   Repbase Reports 15(10), 3417-3417 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. TSDs are TWA. ~25-bp TIRs.
XX
SQ   Sequence 658 BP; 150 A; 162 C; 174 G; 170 T; 2 other;
     cggcctggcc acggggatcg gcggtgcgaa cgacgaagcg gcggatgagg cgaccattcg        60
     cgcggcaccg tttgcaggcc acgggtagtc acgttcgccg ccgcgactag caaggaagtc       120
     cgacagcgaa atgtctatat cgaaattatc tcgatattgc ttagaaagta atcgtttttt       180
     ggttcaagac ctattatttg gaagagattg tggagtacat gatttgaata agaatcggag       240
     tatagatgga gaattccaca agaagcacga gaaatacaga atgtatccag aaaaattttg       300
     gctgctttgg gtggctagac ttccaaatag ctsgtctagg tagtatwtca gcaataaaaa       360
     tttcggtgtt catttttcgc ggcgaaaaca actaaactca tttaatcact gcactattcg       420
     ccgcgactac cgctcgactc cgtggctcgc gccgtcctta ttcatgcatt tgttttgctc       480
     gcccgccgcg tcgcaagtcg cccgcgcgat tcgctcggta catttcgccg gtcgcttgcc       540
     ggtcgccggt gcgcgtggct tgataagtac atttctatgc gcttatttta gtcgctagac       600
     gcttcgccgt tcgcaccgcg cgaatattcg tatcggcgaa tgtcccgtgg ccaggctg         658
//
ID   Harbinger-N1_DEl repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-468
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4030-4030 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 468 BP; 130 A; 105 C; 110 G; 123 T; 0 other;
     tgccctcttt ccacacagtc catccgttgg aaacggttgg aattttcaac aaatgtgaaa        60
     ctccgatttc cacagagcac atccaccttc cccttccgat ttcagctgat ctgaacagct       120
     gtggctcgtc aaaacgtaaa caaagtcaac aggtcaacca tctttgttta tgttttgatg       180
     agctacagct gttaagatca gctgaaatcg gaaggtggaa ggtggatgtg ctctgtggaa       240
     accggagttt cacttttttc aaaaatccca acggtttttc agggatggac tgcgtggaaa       300
     gagggctgca ccgcagaaac atcggctaac tatcgcataa attagtccgt caaagtccgt       360
     caaattttaa cggcggacta actgggaagt ttttggaacg gcaaaacctt atggaccatc       420
     ccttcaacgg atggtggaag gtggatggat ctctgtggaa atacgcta                    468
//
ID   Harbinger-N1_DPe repbase;    DNA;    INV; 1071 BP.
XX
AC   .
XX
DT   16-JAN-2012 (Rel. 17.08, Created)
DT   16-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-autonomous Harbinger: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1071
RA   Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(8), 1382-1382 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. It shows similarity with
CC   Harbinger-1_DK.
XX
FH   Key           Location/Qualifiers
FT   CDS           778..242
FT                 /product="Harbinger-N1_DPe_1p"
FT                 /translation="MERHCFDILVNRLEVLRKKDTNCRAAIPLEKRIAIAL
FT                 YTLGSSSEYRTVGRLFGVAPNSVCNILHEFCRALIRAQPPSWTRPSPCTHV
FT                 NFCVVRANLQFSPAICQPAGTQARHSISPCRLLLFSCLLHCVIILYIINNK
FT                 KQIYLFNVPLEEFSGTKSILLISFWSAVLPSCSVVVFVFC"
XX
SQ   Sequence 1071 BP; 329 A; 225 C; 228 G; 289 T; 0 other;
     tataggcttt tcacactgac gaccatccac catccaccat ccatttcggg gatggtccgt        60
     aaggttttgc cgttccgaaa atttcccagt tagtccacca tccattttgg atgttcctaa       120
     accgcacgtt tctatgcgat agttagccga tggttttcaa atgcaactct gaataattgt       180
     cattcacaat ggaaaaatgg tattcactgc gaaaacgtaa acaatgattg tgacaaaatt       240
     aacaaaaaac aaaaacaaca acagaacagc tcggaaggac agcagaccaa aaacttatta       300
     ataaaatgga tttagtgcca gaaaactcct ccagtggtac gttgaataga tatatttgtt       360
     ttttattgtt tataatatat aatattatta cacaatgcag caaacaagag aacaacagca       420
     ggcggcaggg tgaaatggag tgccgcgctt gagtgcctgc tggttgacat atggcaggag       480
     aaaattgaag atttgcgcgg accacgcaaa aattcacatg tgtacatgga gatggccgag       540
     tccatgaagg aggctgggct cggataagtg ctctgcaaaa ctcgtgcagg atattacaca       600
     cactgtttgg agctacaccg aaaagcctgc caactgttcg gtactcagag gacgagccca       660
     aagtgtatag cgcaatggcg atgcgctttt ccaaaggaat tgcagctcgg cagttggtgt       720
     ccttctttcg cagcacttca agccgattca ctaaaatatc aaagcagtgc ctctccattc       780
     ggaaactctc tttgaaaaac gcctcgttgt tttctggtac atctttctcc caaaatgtcc       840
     cgaaccgctt ctaaaaccat aaaatatgtc cttgtacttt aaactaaata aataaataat       900
     aaacttaata aatcttccgc gcaaatttaa tgaacttgtt attggcatca gctgtttttg       960
     atggatgttg gatggtggat ggtggatggt ggcagtgtga atcggagttt cacatttgtc      1020
     aaaaaatccc accattcccc cgggatgggc tcagtgtgca gaggctatta g               1071
//
ID   Harbinger-N1_DTa repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-139
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6231-6231 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 139 BP; 50 A; 22 C; 28 G; 39 T; 0 other;
     ggcctagtac tcacttcaat caaaaaggca acgaaacgaa aatttctata caaaaatgac        60
     aggcggaaaa tttcgtgatc aaaaatttgt atggagattt tcatttcgta ggcttttcga       120
     ttgaagtgag tactaggca                                                    139
//
ID   Harbinger-N1_LMi repbase;    DNA;    INV; 971 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-971
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2985-2985 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 971 BP; 241 A; 230 C; 225 G; 274 T; 1 other;
     ggccggtaac gcactaggca gccaggctgc ggcagccaaa atattgagca gccagttggt        60
     ggcagccagc gttggcagcc agctgacggc cagttgtacc caatcggccg agcgacatgg       120
     acgtggaaga tgcgataatc gtttggcatt ctggcaaata aatggagaat ttttcatcgc       180
     ccaatggatg ttcgggaaga atttgcaatt gccataataa aaacatgctg tgttttacat       240
     aactatgtgc gagaaagaga tggctacaaa tttgaagaca cactgtatgt ccctgcctcc       300
     agaactggaa gtttccccag gtcctgcaac agcagggggc cgttcatcag catcagcata       360
     tagagattta tttgcggatt actttacgaa tgaaaatccg ccggaatggc aaaacagaat       420
     tgcattgggg tagtaattac atattatgta tgtaactatt gttgtttcca tgtgaattag       480
     tgtgtattaa gtgtacaatg aaacctcttc ttccttattg tagctgtaag caattttttc       540
     tatgtaataa ataataaata acttaccgaa ttcattmttt tcattttcag acatgttctc       600
     ctcacacatt acatttgcga tttcctccca cctccttctc ttcacatcac gatcactata       660
     ttgctcacaa gacacatccc agatttctct tcgtctttga atttcatgaa taaatttctc       720
     tgtgtcgaac gtcatgacaa cttggagaca aggtgtggct gcttggtcaa gtgcgcggag       780
     attgctggca gccacacgcg ttcactgcga ggctcgctgt tggcactggc tgccagcaac       840
     ggctgctcat tggctgccgc agcctggctg cctaggcgtt accggcctta ggccagtgct       900
     tgtagcggcc tgccgttacc accattgttt cattggctgc cgcagcctgg ctgcctagtg       960
     cgttaccggc c                                                            971
//
ID   Harbinger-N1_PPo repbase;    DNA;    INV; 958 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-958
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2735-2735 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 43bp TIRs. TWA TSDs. Classification
CC   is based on the terminal structures.
XX
SQ   Sequence 958 BP; 312 A; 154 C; 170 G; 322 T; 0 other;
     gggtgagttg catcaaatcg ctggttatcg taaaagttat aatagggtta caagtgcaaa        60
     aacatattct cacagaggtt ttatgtgttt ttcgttttta caatggaaac atttaaacct       120
     gaatgtcact aaagtgtcaa gttggtgtca agaatgacat ttacgtaaat taaaatgttt       180
     ggaaattcat gtttcgccga ttatatttat gtatcatacg catggtattt tatagtgaaa       240
     taaacttttt gcccacgaag atggagaaaa tggcaaactc ttgtgaaaat aaactagttt       300
     gggccattat tgaaactgta tttactttac tactcaaata tgtagcaaaa atgaagcaat       360
     aaaattatac aaatataaat gcatcttatt tattttccat attataaatt gtcctgtcaa       420
     tgcatattat aaattgacct tttatggagg acattttttt aaataagaga aaagggacaa       480
     gcgctgttgc tatggcctta gacactcgaa atttgtccaa actgaatgtt tggccaaatt       540
     tcgagttcca tcttggaaat ccattatttc cgagcacgca agactttatt cttctggatt       600
     acgtatagga taatagtaga attttctttt tccattactt tttccattat ttgtgctttt       660
     gaagataaga gcttgtgaca gttgacacta ccgaactgac actaaccgta acgctaacta       720
     taaccgccca aaatcgggcg gttatgatta gtgtcaaata tgacgtcatt ttgaccagcg       780
     caaaactggt gtagcgaata tcatgaacat ccgaagacgt aaccatcggg aatgtgctgg       840
     ttaaggttta tagttagtta atgtaactca tccttagtaa attttaaggt tattccaaat       900
     attaccgttc aaataatttt aactttaacg gtaaccggcg atatggtgca actcaccc         958
//
ID   Harbinger-N1_RPr repbase;    DNA;    INV; 707 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Harbinger DNA transposon: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-707
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3234-3234 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 707 BP; 197 A; 158 C; 145 G; 207 T; 0 other;
     ggctggaaac atagtggagc ggcgagcaaa gcggcgatga tagttgcttc aaatcaaaga        60
     gaccgacgag cagcgagcaa agagtcgcat gcacatagtg acgagtttag tcgcgtttct       120
     cctttcgacg agacatgatg gaggaattat ttctatacga aaattcttcc ttgaaaattt       180
     ggtatttaca gcagcttagt agcaggagct gcagtgttca tgatataaac aggactagac       240
     atgaacttgg tgaattccat cacttgtacc aacaacttcg ggagcatcct ggcaagtttc       300
     atgcgtattt tcgaatgtct atttcaacat ttgattacat actaaccagt gttgaaggca       360
     tgttaatcaa gaaaaggacg aatttcaatg ttaaccccat taatcctgtc ccatttctta       420
     tccaacacaa atcggttgtg atgtagagga tccttttggt cccacagagg tttctttaaa       480
     aaaaactaca ccaataaatg cagcaatatc cattttaacc ttgaaaattg agcgcgatga       540
     gagcgaagaa atcaaacatg tcacaacgcg ttgctctact ctctctcttg gtagcgttgc       600
     tctatcttcg ctttgctccc cactatgcgc ggtcccatat gttaacttgt gtttgttttc       660
     gccgctttgc tcttcgctat catcgccgct ccactatgtt tccagcc                     707
//
ID   Harbinger-N2_DEl repbase;    DNA;    INV; 477 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-477
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4029-4029 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus.
XX
SQ   Sequence 477 BP; 151 A; 81 C; 85 G; 160 T; 0 other;
     tactgtgttt atgcgatggc catttcatgc aatcatttca tgaaatgggg aaatacgtgt        60
     gtgcataaac accatttcat gtattcgctt acacacgaaa gttgactatg aattcagacc       120
     aaatgcgtga aatggtgagg cgcaaccaac ttaactcgct ataaataagg tggcaacgcc       180
     ggacgtaaaa gtaaacaatt gaaattaaat tcttctcgcc ctttaaaggt catttatttt       240
     tttgtcttca ctcggctttt attgttaatt agttttcctg ttcgctttgg cgatggtaaa       300
     agtactaata atcagctaaa ataataatac tagcagagct gccagacatg taaattaagt       360
     tgggacttaa ttttacacgt ctggtatctc tgctaatatt atttcattat gcataagcag       420
     ggctattttg atttcatgta ttcaagaatt catgaaattc atagcataaa catagta          477
//
ID   Harbinger-N2_DTa repbase;    DNA;    INV; 426 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   08-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N2_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-426
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6180-6180 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 426 BP; 120 A; 93 C; 93 G; 120 T; 0 other;
     gggccggttt ctcgagtccc tgtcaaagtc cctgatagct atctgttcga aaaacttaaa        60
     gaccagataa actgttcgta aaagcaaatc cgctttctcg actgctttaa tttatctgaa       120
     cgagaaacaa ttacagagtg ctgttaacgc acagaattgt gctgtgaagc gcaaaaaatg       180
     gcgtgcttcg attatttcat cagctgtttg ggtataattc aaaggaaaag tcagctgtga       240
     tttcgtttct tcttcatagt tggctttggg aaatcagctg tcattctatc gagccgaaaa       300
     cgcttaacag ggactccgag tccctgtcaa agttagctct cacatttatg ctcgagaaag       360
     ccaaaatgcc ttagcaggga ctttatctgt tcgagaaatg ttagccggca ctcgagaaac       420
     cggccc                                                                  426
//
ID   Harbinger-N2_LMi repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1281
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2986-2986 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1281 BP; 366 A; 268 C; 239 G; 408 T; 0 other;
     aaggcgcatt tacactgaag ttcggaacaa atttttgttc gcaacattgc aactgttccc        60
     agccaatgtt gacaacattg ttcgttgttc gtgaccgcga ctacactggc gacgaacatt       120
     tgtattcaaa tcgtctgcta cagtgagctt ctgcgtgtat ttgcgttacg gaattctcag       180
     agctaagcta tgtcaagtga ggaggaagaa acattagcat gtggagctgc gttattattg       240
     atagatcaat aaagaagacg caaagaatga catagtcatc ggtggtggac taaaacatat       300
     tataaaagtc gtggtgggaa tgacatgctt tgtgaactga acgtggaaaa cggttctggc       360
     cttcgtaatt tcacaaagat gtcgccttca gatttttaaa ttttgctaaa tattaaaggg       420
     cttgttttct tcaaaaaaga cacgaatttc aggaaggcaa tccctgtgaa acaaagactt       480
     cctgtaaccc tccgttttct tgcaatagga aattcgtacc aaagtctagc atatttattt       540
     catatttcaa agcctgctat acgatatcta aaatagttcc tgcggtttgt caaggtttgt       600
     ttgaaggatt taaggattat gtaaaggtaa ttcatttatt ttaatatcac tgaaacatcg       660
     cacattcaca gcaataaatt tgatcccagc tgaatgattg cagtgttatg tccaggaact       720
     ttaaaatttt atatccaaac cactttggat tgtacgtaga gtcccccccc cccccccttc       780
     ctgttttcat ttttttcttt attttccttt tctcctgccg gtattgtgac atgagggttt       840
     ttattttctt atcaatgtca ctgctgctgg tacccagctc cacagtattt tttattattt       900
     tatttttatt tattttgaaa gaatcatgtt tctctctcat gttcttgtac cttgcacaat       960
     gtacgttcca caaccactgc tcttcctcat ataatggtac aagatggtaa atttttcctg      1020
     ctacactcca tctgacagaa caccgaaaac cacgacacac gacacaatac tcggttcagt      1080
     agcaaaataa aaacaaacac tagcgctgtg tagcggcagt tcgtggtaac aggccacaga      1140
     acaaatgttc ctttgatctt taccgacaca gccccggaac actgtttctg tgttggcaac      1200
     atgttgtcaa catcggcagt ctagtagcag ccacgaacaa tgttgcgaac aatgtttcga      1260
     actcagtgta aacagggcct t                                                1281
//
ID   Harbinger-N3_DEl repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-385
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4016-4016 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 385 BP; 118 A; 72 C; 86 G; 109 T; 0 other;
     gggcctagtt acacttgggt tgcttcattg cgtctgtggc tagacgcagt tttttacata        60
     ggttttgtat aggcagatag agatggggaa aaagtgcgtc aaagtgcatc agtctacaaa       120
     attttgattt ttaccgatgt ttactaatat ttactcgata tttggcatat cgatatacta       180
     tcgtggggaa ctatcaccac tatcgaccga aaacaacaac aaaaatagcc ggtaaacaaa       240
     ggcgggagga ttttccttga caaatcaaaa caaagaacag ctgttcagac gcaatgaagc       300
     acgtctgtca agtgtaacag cctattctgc ttcattgcgt ctattccgat atcgatagga       360
     gacgtgcgtg agtataacta ggcta                                             385
//
ID   Harbinger-N3_DTa repbase;    DNA;    INV; 524 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N3_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-524
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6181-6181 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 524 BP; 132 A; 114 C; 105 G; 173 T; 0 other;
     agcctagtac tcagttcggc taagagtttt actagtcgaa aaatattaat cttttagtgt        60
     gaccgaagtt ttcggagttc atccgcaatg catgtagcat ggtcttactc tcagcaaaca       120
     aatcaactgg cgccaatttt aaaatattac aaaacgttga gccgacctgg gtcgcaagct       180
     ttaaattcgc tgttggaatg gcgatatgta ttgcagcaac tcctacaggc agttttccat       240
     tggtttttgt ggttttcctt ccatttataa attgttattg gcacaccgct tctgcacaaa       300
     cacagccaaa gatcaaattt tttattcttt gggccgcggc taaaggcgtt catcggaatt       360
     catccgctaa atctagtatt ttagtggtat tttcttacta tttccttagc tcaactgagt       420
     accgaggtgg gaaaaagtcc ccggctaagg gctttagcta cctatttgcc tctcgcttac       480
     tcctatgctt agctagcagt tttcgtcgta ctgagtacta ggct                        524
//
ID   Harbinger-N4_DEl repbase;    DNA;    INV; 537 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-537
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4017-4017 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus.
XX
SQ   Sequence 537 BP; 143 A; 121 C; 119 G; 153 T; 1 other;
     tagcccagtc ccacagagcc catccaagcg aaacggttgg gatttttgat ggatggtgga        60
     ctggtgttcc cacagagcca tccaccgtcc atcaaaagtc acagtggcgt atgcagaatt       120
     ttttgagggg gtctttcact ctatcaaact cttttagaag tactttttcc ggctcttatt       180
     ttattttaat gctatggatt agttgttaaa tggttatctg aacttttaaa taatggctta       240
     tatctactct gtattcaaat tgctgcctgg gggagcgtta acctcccaag ccccccttct       300
     ctttcgacta cgcctctggt tcacagaaac aaagatggcc gccatgtcaa ttcaaattcw       360
     ttcgcgccaa gactttagag ttgcaccgaa aaaaaatcgg ctaaatatcg gctagaaacg       420
     tgcggttagg aacgtaaatt ccaccgtcaa ggaataaccg ggaaattttt ggcacggcaa       480
     aaccttacgg accatctttg aaagagatgg tggatggtgc tctgtgggac taggcca          537
//
ID   Harbinger-N4_DTa repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N4_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-375
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6232-6232 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 375 BP; 107 A; 71 C; 78 G; 119 T; 0 other;
     tactgtgttt atacgatgcc gaattcacgc tatcatttca cgctttcggc cgattcgtgc        60
     ttgtataaac gccatttcgt gaattcggca acacacgaaa gttgactatg atttcagccc       120
     aaaagcgtga tttggtgata tgcagtatgg taactctgta aaaaatgatc gacgttgcca       180
     gatcgctaga aattgaaggc cttttatagg ctatatctct aatcagtggt attaaaaatt       240
     agatattttt gccggtccgg catccctatc agctgagagt gaataaaagc atgaattctc       300
     ggctgtcgta taaacagggg ttatttctat ttcgcgcttt caagaaatcg tgattgctat       360
     cgtataaaca tagta                                                        375
//
ID   Harbinger-N5_DEl repbase;    DNA;    INV; 489 BP.
XX
AC   .
XX
DT   02-JUL-2021 (Rel. 26.08, Created)
DT   02-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-489
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4018-4018 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to consensus.
XX
SQ   Sequence 489 BP; 129 A; 104 C; 98 G; 156 T; 2 other;
     agcctagtac tcagatcgac gaacagttac gccagcgtaa aaagtttatt ctttctagtg        60
     tgaccgaagt tttggtctta cggtcttact gtcagtcagc tgggcttgtt gacaaacgga       120
     aaacaattca attcaactca attcagttca acaaaaatta attkcataaa aatggatcgg       180
     gaatacttgt cgtcaacatt gtattattgt agtacatttt sctgagtttt tccgtccatt       240
     ttttgatccg acaaatacta tgctctgcca actccaacct caaaagatta aattttgtat       300
     tctttacgcc ggggcctggc gtacgttcac ccagagaaat ctggcaacgc tttgcaattt       360
     tctggtattt tttcgtcgat ctgagtaccg gggtgaaaaa aggcactgac gaaaagtgta       420
     cgtcggttat ttgcctctcg ctctctctca tagctggcgt acggatttcg tcgatctgag       480
     tactaggct                                                               489
//
ID   Harbinger-N5_DTa repbase;    DNA;    INV; 116 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   14-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N5_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-116
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6182-6182 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 116 BP; 35 A; 21 C; 26 G; 34 T; 0 other;
     gggccgtttt ctcgtccgtt tgttaaattt aaagtagggt taaaaccttg aaatcgtatg        60
     ggaaatcaga gttttaaccc tactttaaat ttaacaggcg gacgagaaaa cggccc           116
//
ID   Harbinger-N6_DTa repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N6_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-160
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6183-6183 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus.
XX
SQ   Sequence 160 BP; 52 A; 23 C; 31 G; 54 T; 0 other;
     gggccgattt ctcaatgtca tgttaaggtt ctagttagtt atctgtcaga gaaagttaac        60
     atgaagttaa attgttcgga agaacaattc gttttctcaa tgtgatgtta atttaacttg       120
     aaattaacat gaacttaaca tgacattgag aaatcggccc                             160
//
ID   Harbinger-N7_DTa repbase;    DNA;    INV; 1172 BP.
XX
AC   .
XX
DT   21-JUL-2021 (Rel. 26.11, Created)
DT   21-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   Harbinger-N7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1172
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6233-6233 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TWA TSD.
XX
SQ   Sequence 1172 BP; 393 A; 234 C; 205 G; 340 T; 0 other;
     gggccgtttt ctcgtccgtc ctgcaaagta aaatttagct aatagaagga taaatttatc        60
     ccggtggcaa atcagttttc gttttctcgt ccgtcattta aaactccaaa taaaaggcgc       120
     actaatttga gactgggtgg cagccccaca atagaagagt taactaattg tcaaaaatta       180
     atcgaaaaac tatcgaaaaa taccataaaa cagtcatact aacagctgat gatataaaca       240
     aaatttcaaa ctaataaaaa acaatgtcgg cagaaagaaa gtttcgcggt aaaaattata       300
     ccgatgaaca ggacacaatt cttgtagaac tggtgtcttc ggaatcgcct ccgggagatt       360
     gaattcttac atgcgtgcaa tctatggctc ctatcttgga ctttcggaaa cttggctatt       420
     ttataaaaat caacaacatt ttcttgaaga tctttaatac gccggtactt cataaattgt       480
     tttgaaaaag acgctatagc aaaattaacg cccttaacaa ctcgactggc agtggccacg       540
     ctaacaccac aaaaattgcc tacagttata agaaaactgc cgcttgcgta gaatctaaga       600
     gctattagaa gcttaaccca tgtattatcg tttcccgata ataatggttt gtgattatat       660
     ggaattagtt aaatcaaatg aatgcactta ctgctttact ttaaattcaa gtcgcaaaac       720
     atttttttgt aaaacaaatt tcaccgcttt ttcttaagag aaccctttta acaaattctt       780
     catcactgta atgttcgaag taatttcttt ggtcgtgata tctgcgccga taggttcgca       840
     cttcagacaa ttcgacgata tcccacagag tttgaagata aatcgctcgg gaattcattt       900
     taaaatcaat tggatgacat taacaatttt gatttgtatt taactgtaaa tagaatcacc       960
     tgttttcgaa tgaagagtgg aaccagattg acaacgctca aatgtctggc aacacttgcg      1020
     cacaatccaa ccgcacaaat tttgcacgtt ggatgaagta ccgagacaaa atttgtccct      1080
     acctgcgcta acataaggac gagtaaacca ttttttgttt atcgctccgt tgtcccggca      1140
     ggcaaactaa agtacggacg agaaaacggc cc                                    1172
//
ID   HARBINGER1_AG repbase;    DNA;    INV; 5377 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   HARBINGER1_AG is an autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Harbinger; DNA transposon; Transposable Element; HARBINGER1_AG;
KW   Harbinger superfamily; MADF/SANT; transposase.
XX
NM   HARBINGER1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5377
RA   Kapitonov V.V. and Jurka J.;
RT   "HARBINGER1_AG, a family of autonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 17-17 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~20 copies of HARBINGER_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   HARBINGER1_AG copies are flanked by the TWA 3-bp target
CC   site duplications. This element has imperfect 40-bp terminal
CC   inverted repeats (5 mismatches) and subterminal TIRs (positions
CC   54-106 and 5269-5321).
CC   The HARBINGER1_AG consensus sequence encodes two proteins:
CC   a 471-aa HARBINGER1_AG1p transposase and a 245-aa HARBINGER1_AG2p
CC   MADF/SANT-like DNA-binding protein. The MADF/SANT domain is
CC   present
CC   in various transcriptional regulators and is involved in the
CC   chromatin remodeling. Putatively, HARBINGER1_AG2p
CC   was recruited by the transposon from the host genome.
CC   HARBINGER1_AG1p is encoded by 4 exons.
CC   HARBINGER1_AG2p is encoded by 4 exons in -strand.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(452..811,875..952,1393..1596,2345..3124)
FT                 /product="HARBINGER1_AG1p"
FT                 /note="transposase"
FT                 /translation="MSEPELENDNNEVRDRSRSRSRSPQARRLWVQDLFLN
FT                 RNETGNRLLTDITTSGIYETMNRFLRMKKEDFFHLLSLVGPKIAKMDTDFR
FT                 KAITEQERLLITLRYLATGETFTSLQYVFRVSRHSISRIVKETCACLIEAL
FT                 RDYVKSQPESIPIRGCSGCARSELESNPTRGCNEFGSTRLCFLAPTDLSGR
FT                 PELVATEPTVARPDPNSQHQRLPSTEEEWLAISRRFEQRWRFPHAIGAIDG
FT                 KHVEIICPRNSGSEYHNYQKFFSIVLMVVVDADYNFLWADAGGKGGISDGG
FT                 IFKNTRLYHKLENDQLNIPPATPLQVPYQTPVPYFILGDKAFAFTNYCLRP
FT                 YSGVHPPDSMERTFNKMHSTCRMPVENSLGILANRWRVLKGIQLQPDVAKN
FT                 IVLTTVYLHNFLRKHASRDTYTPPSAFDRVVRGRRVDGDWRSEGGLTDLQN
FT                 IASRPSENLADIRNHIANHLKHNRST"
FT   CDS           join(5133..5095,4587..4357,4285..4196,2229..1855)
FT                 /product="HARBINGER1_AG2p"
FT                 /note="DNA-binding protein"
FT                 /translation="MEQAGSSRRNEKIDHEKSLRFIAEVQKHRVLWEKKNK
FT                 NYKNVVLKGDAWAAIAAKEEVSPQDAKHLWSRLLGIYRTNKAKVKKTTQTG
FT                 AGNDDVFRPRWFAYQAMSFVDEATQDAVHVDTLGYDDEGLTPRSLVEAAYA
FT                 VPQSLDDIDWDAAVAFDPEPFSPTPSSYPSALSVTPGTIREGNGVSGALNN
FT                 RLQQPVSGATGAPETADPDDFGRYVADELRLIPSPKRRRIMSIQRELLETL
FT                 KKNL"
XX
SQ   Sequence 5377 BP; 1580 A; 1209 C; 1120 G; 1466 T; 2 other;
     aggccgggct acattgatcg tactcgcaag cgtaattttt atattcacta gcgcatctgg        60
     cggcgaccag cgcaagctag atgtgggtat aatttaagtg ccaaaattat tcatgcttgg       120
     tgtctcatca attttcgacc aggctgtctg tatgccgttt gacatgttga tcaaaatcaa       180
     taaattgcta caggtcagga cgccgagtac tgctgggcaa atcgtcattt gacagttggg       240
     tgcctaagct tcatacaaag cgcacgacaa cattccttcc catctgccaa actccatcca       300
     tcatggcttc cacagccaaa tcttccacat ataattgtag tctatgttat caccttgatc       360
     gcagcagtgt gcattgttta tcgtttgaat cgtttgccgg ccggtgttta gtagaagtga       420
     aaattttggt ggttctcgat tttttggaaa aatgagcgag ccagagcttg aaaatgacaa       480
     caacgaagtc cgggatcgtt cccgatctcg ttcccgtagt ccgcaggcac gtcgtttgtg       540
     ggttcaggac ttattcctga accgaaacga aaccggcaac cggctactga ccgacatcac       600
     gacatcgggt atatacgaga cgatgaaccg atttttaagg atgaagaagg aagatttctt       660
     ccatttactg tcccttgttg gtccaaaaat tgcgaaaatg gacacagatt tccgcaaagc       720
     aatcacggaa caggaaaggc tgctgataac attgcggtat cttgcgactg gagagacatt       780
     taccagcctc caatacgtgt tccgggtaag taatattatt tttgcttttt gctttttgct       840
     aagcacactt ttatcaatca acatataatt ttaggtgtcg aggcattcta tcagcagaat       900
     agttaaagag acgtgcgcat gtcttatcga ggctttgcgg gattatgtca aggtaagttg       960
     cgggtgtaac cagcctcgct tcagtgttta tgtgtttaaa acgttcagcc cggtggcagg      1020
     caccagggcc tgccagtaaa ctttcccgtt tgccggggcc aaccattgct ctggggactc      1080
     tttggctaga gaaacagaat acattgcgaa caactgtact ctaatcgcat gaatacaacg      1140
     gtgtgaaggt aaaaaaatga ttttctaaat attattgcga ttgataaaga catcaaccca      1200
     cacacaacag tattgatgaa gagagtagag ttgaaattat agcgaaaaac ctcatttttt      1260
     ctacatgcat ctttggatca aaattcactg cttgggtagt agatgccggc ggatagttca      1320
     tgaaaaacgg agccggaatg aacgtgtgaa atgtgctgca ctacgttttc ctcttsaacg      1380
     tcctcgtata aaaagagtca gccggaatcg attccgatcc gtgggtgcag cgggtgcgct      1440
     aggtcggagt tggaatcaaa tccgacccgc gggtgcaacg agttcgggtc gactcgctta      1500
     tgctttctcg cacctactga tctttcgggt cgacccgaac tcgttgcaac cgaacctacc      1560
     gtggcccgac ccgacccgaa ctcgcagcac caacgggtcg gagtcgttta tgctttctcg      1620
     cacctaccgg agtatttgca cccactgaaa ctacttatac cttttgggtt gacccgaacg      1680
     actccgggtc gctttcggat ggctccgacc cgataggttc gggtcgaccc gcccattact      1740
     aaaaggttca tgtaatatga aaacggaaac tttttttttc ctcgaacgta gctcttcaat      1800
     caagtaacta atgtgatata caaaactcaa aaagtattca aagttatgtt tttaaagatt      1860
     tttttttaat gtttctaata actcccgctg aatactcata atgcgtctcc tttttggaga      1920
     cggaataagc cgaagctcat cggccacgta ccggccgaaa tcgtccggat ctgcggtttc      1980
     cggtgcgcct gttgcgcccg aaaccggttg ttgcagccgg ttgttgaggg ccccactcac      2040
     accgtttccc tcgcggatcg tgccaggagt gacggataag gcagaagggt aggaagaagg      2100
     agtgggagag aatggctcgg ggtcgaaggc aaccgcggca tcccaatcga tgtcgtccaa      2160
     cgattgtgga accgcgtagg ctgcctccac gagggaacgg ggagtgaggc cctcatcgtc      2220
     gtagccaagc tgaaaaaaaa agaaaatgaa cattaaaatc ataatttatg tttctcataa      2280
     gctctaaaat atacagtaac taaaacatgc attgaaatca ttcctctatt ttattttctt      2340
     ttagctaccc tctaccgaag aagaatggct tgcaatctca agacgatttg agcagcgctg      2400
     gagatttcct cacgcaatag gtgcaatcga tgggaagcac gttgaaatta tttgccctcg      2460
     taatagcgga tccgaatatc acaactatca aaaatttttt agtattgtat taatggttgt      2520
     ggtcgatgct gattataact ttttatgggc agatgctggt ggtaagggag gaatatcgga      2580
     cggtggaata tttaaaaaca cacggctgta tcacaagcta gaaaacgacc aactaaacat      2640
     tccaccagca acgccattgc aggtcccgta ccaaacccca gtcccatact ttattctcgg      2700
     tgacaaggca tttgccttta ccaattactg cttaagaccg tacagcgggg tgcatcctcc      2760
     tgattcaatg gagcgtacat tcaacaaaat gcactctact tgtcgtatgc cagttgaaaa      2820
     ttcgcttgga atattagcga atcgatggag agtgctcaaa ggcatacaac tgcagccgga      2880
     tgttgccaaa aacattgttt tgacaacagt ttacttgcac aattttttgc gcaagcatgc      2940
     ttcgcgggac acatacacac ccccgtctgc atttgatagg gttgttcgcg ggcgacgagt      3000
     cgatggagat tggagaagtg aagggggctt gaccgatctc caaaacattg cttcccgacc      3060
     ttcagaaaat cttgctgaca taaggaacca cattgcaaac catttaaaac ataatcgttc      3120
     tacgtaaatc catccaacca ataccatgga tattaaaatt aataataaat tatgaaatcg      3180
     caaacacaac tacaccgact attctgtaca ttactaccag catggttatt tataatatac      3240
     atttaagtac gcgagtgcaa caactacgga tttttttaag cattactcgc ctgctctatt      3300
     agcggctgga taaactggct ggcttactag ctcactcacc gaataaacgt ggccacatgc      3360
     ctgttgtgtt tggttgctgc tggtggatcg agtggacgaa cgtggcgata atcatacgca      3420
     ygtaactatg tacagtaaaa tctttctaaa atcaattctc ttcaagattg atcatggaga      3480
     aacttaacta tagctacgta cacgatagcg actcgcccaa acacattatc ggacgaattg      3540
     gccatcgacc cgctgaaata gcggagtatc acggacgatc gtaacaagca gggtacgctc      3600
     gtctatcaac tacgcacctg cttccagcgc aacgatcgat tgccaattgt tattgccgat      3660
     tgcaattgca caacgagcga agaaagaatc catcgtcatg tcagcactat gattccggac      3720
     ggctatacat attggtctcg tgctgttgac gtggtgcgct ggtcagcatt tcctgcttgt      3780
     cgtgatcgtc cgtatatgtg tacattttaa ggatcatagg aacacttcgt gtgtgaaatg      3840
     attcatttgt attaaaactt tgacgaacga agcacatact actgtggtgt tatggggaaa      3900
     accaccatga tatactttgt tcgtcaaaat gttaattata taagtgcaaa agagagcttt      3960
     tttatgtata taacaaacga gcttcgcatt aagttagtta aatagaatgt gagtaaggtc      4020
     aactagttcg tcggagaaca tctatcaatc atggataccc aaatgtgttg atgctcaata      4080
     ctaggcattt atgaaaaaaa tgatttgaaa gctgacatta gcttccacgc caaagattaa      4140
     acaaactagt taacccacac cactagttat ttaaaataag tataaacata ctcaccgtgt      4200
     ctacatgcac cgcatcttgg gtggcctcgt ctacaaaaga catcgcttgg taggcgaacc      4260
     accgtggccg gaacacgtcg tcattgccta aaataaaaca ataataaatt gggatgagaa      4320
     ataataaatt aactgtatat atattttcct acatgtacct gcaccggttt gcgtcgtctt      4380
     cttgaccttg gccttgttgg tccgataaat gccaaggagt cgggaccaca gatgtttcgc      4440
     atcttgtggc gaaacctcct ccttggccgc tatcgcagcc cacgcgtcgc ccttcaaaac      4500
     tacattttta tagtttttat tttttttctc ccacaaaaca cggtgctttt gcacctcggc      4560
     aatgaagcgg aggctttttt catgatcctg gaatgaaaaa gaaaattcag ttaaatactt      4620
     ccctttttta atttaaatta aaacaacaga aaggtcgaca atcgcgtgat aattcggtca      4680
     tgctagccgt cacaccggaa ccacagtgat aataataaca cgtgctattt ttatattaaa      4740
     tgtatacaaa taggccggta aattttgctt acaattttat aaaaaaaagt tctaccaagc      4800
     aatatgacaa agccgttcct catgaataaa aaaacacgct ctatactaaa aaccgctaca      4860
     ataccaaaac gaacaaccag tttcacacac tctgcaatgt agtttaaatg atgaaataga      4920
     tggacaaacc ctacaacaaa ttatttaagc acttgtgaaa cctacaaaca ctacattttt      4980
     caataaaatg ttcagcacaa ttgcggcccc gagccgagcc ggcgattcac agacaacagt      5040
     tcacacacac acacacacac acacacaatt ttcgttaaaa acagttgtac ttactatttt      5100
     ttcattgcgt cgactgcttc ctgcttgttc catggctaga aatacaatat gtatgttaaa      5160
     ttaccacata ttttcaaaaa aacatacacg acaaaatatc gaacatactc accgagctgt      5220
     ttgtttactg gtttgtgatc aaaattatag gctcctcgac ccaaaacgct ttttgacaga      5280
     taaattatac cagcctctag cttcgacccg ccgccgctag atggcgtacg cgttcacaaa      5340
     aattacactc aggagtacga tcaatgtagc ccggcct                               5377
//
ID   Harbinger1_DYa repbase;    DNA;    INV; 2324 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.05, Created)
DT   15-MAY-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   Harbinger-type sequence: consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Harbinger1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2324
RA   Jurka J.;
RT   "DNA transposon families from fruit fly.";
RL   Repbase Reports 9(5), 937-937 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(299..418,523..798,780..1943)
FT                 /product="Harbinger1_DYa_1p"
FT                 /translation="MSISTFDYILNKINSRLMKNWPNFVIHPILPCQKLII
FT                 TLRFFFGSIFRKYGSRLSKNASSSSFSFLLFNSNQFLRCSHLLLFFFLVDK
FT                 LVDHHTSDENPGEAASKVNCDDASKLPTNLRGFIWSFKKSKLVKKKQTGEM
FT                 RPRSVMAVSLLRNSRVSRFGNRNFFPFASELVADVLPFFFKQPSEIKIVLI
FT                 TLMSKIIRNYRFLATGASFASLAYSFKIGRTTVSVVVKETVIALWEELQPL
FT                 HMPQPTKEIISQTADKFWNLWNFPNCAGAIDGKHIRIKCPADSGSMFYNYK
FT                 KYFSIVLQAVADANCKFIAIEVGGYGKQSDGGTFNASQLYMMLKARQFLPP
FT                 DSCLPGTNTKMPYVFIGDEAYPLLGNLLRPYSRRDINANNEYFNSRLSRAR
FT                 RCIECAFGIITSKWRLLWKPIETDPSFVDIIVKSICILHNTIIDLEGPYDI
FT                 DMETQNFHIDTETHNDETFNHVNLRTGQLIRNAFRDFALTETPNSSQLLIN
FT                 LYLLSVSNMFSISVQFFSTKILL*"
XX
SQ   Sequence 2324 BP; 710 A; 449 C; 437 G; 728 T; 0 other;
     aggctgacgg cagagtgcgc gcgagaagcg aagcgtagcg agaagctatg agcaaagcga        60
     gaagatgaca gagtgagagc gagacgagaa gcgagctaca ttgctctctt ttatttataa       120
     atgtgaacga gatggattcg gacgaagaat ttttcgcatc aagcgcaact ataaacttta       180
     tattaaaaaa aaaaccggcg tccaccccct taacaccaac agaaataaaa aaggggaatt       240
     ccacaattta tacaatgatt tgcgaaacta cccagatagg ttctttaact atacgcgtat       300
     gtctatttcg acttttgatt atatattaaa taaaattaat agtcgtttga tgaagaattg       360
     gccaaatttt gttatacacc ctatactgcc ttgtcaaaaa ttaataataa cattgaggta       420
     agtttttaat atatttattg tgtattatag tttgtcggta tcggaaatat cgtcaaaaga       480
     aaaattaaaa attgtttttt gaatttccat tcggcataat aatttttttt cggatccatt       540
     ttccgcaagt atggtagtag gctgtcaaaa aatgcctcgt cgtcgtcttt ctcttttttg       600
     ttgttcaata gcaaccaatt cctccgctgc agtcaccttc ttttgttttt ttttttggtg       660
     gacaaattgg ttgatcatca cacttctgat gaaaatcccg gtgaagctgc ctcgaaggta       720
     aattgtgatg atgcgtcaaa acttccaacc aatttgcgcg gtttcatctg gtcttttaaa       780
     aaaagcaaac tggtgaaatg aggccaagaa gtgtaatggc tgtaagcctc ctccgaaatt       840
     ccagggtctc cagatttggg aataggaatt tttttccatt cgcttcggaa ctggtcgcgg       900
     atgttcttcc attttttttt aaacagcctt ctgaaataaa aattgtatta attacactga       960
     tgtcgaaaat tatccgtaat tacagatttt tagctactgg agcatctttc gcatcattgg      1020
     catattcatt taaaattggg aggactactg tttcagttgt tgtgaaagag actgtaatag      1080
     ctctttggga ggagctacaa ccgctacata tgcctcagcc cacgaaggaa ataattagcc      1140
     agacggcaga caaattttgg aatctgtgga actttcccaa ttgcgctgga gcaattgatg      1200
     gaaaacacat ccgtattaag tgtccagcgg attctgggtc tatgttctat aattataaaa      1260
     agtacttttc gatagtactt caagcggtag cagatgccaa ttgcaaattt attgccatag      1320
     aagttggagg ttacggaaaa caaagtgatg gtggaacatt caatgcatca caactgtata      1380
     tgatgctaaa ggctcgacaa ttcttgccgc cagattcttg cttgcctgga acaaacacaa      1440
     agatgccata tgtttttatt ggtgatgagg cttatccatt actcggaaat cttttaaggc      1500
     catattcaag aagggatata aatgcaaaca acgaatattt taacagtaga ctttccagag      1560
     ctcgaagatg cattgaatgt gcctttggta tcataacatc caaatggcgt cttctctgga      1620
     agcctattga gacagatccc agttttgttg atataattgt gaagagtata tgtattttgc      1680
     ataatacaat tattgacctg gaagggcctt atgatattga tatggaaaca caaaatttcc      1740
     atattgacac cgaaactcat aacgacgaaa ctttcaatca tgttaattta agaacaggcc      1800
     aattaattag aaacgccttt cgcgactttg cactcacaga aacaccgaat agttcacagt      1860
     tattaataaa tctatactta ctttctgttt caaatatgtt ttccatctct gtccaatttt      1920
     tttccacaaa gattctatta tgatagatct tgctcttttg atcccatagc gctgggcgta      1980
     aaaatatttc gtcaattaat ttttcaacgt ttatctccat ttcgttttgt tttctcacaa      2040
     atgccaccaa atgaaaacat taaaaacgca tgctttgaaa gcaaacggta aataaagcac      2100
     agaatgcaac aaaacaatcg tacgctctga gcgagttgaa gcgataaagc aggttgcaaa      2160
     ctgctctctc gctttgctct cgctttatcg cttgagctcg ctactcgcct cgctctcact      2220
     ctgacatatt cgagcgattt cacttaaaaa tgcttgcaga ctttatcgct cgttctcgcc      2280
     caatattatc gcatcgcttc gcgcgcgcac tctgccgtca gcct                       2324
//
ID   HARBINGERN1_AG repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   11-FEB-2003 (Rel. 8.01, Created)
DT   11-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   HARBINGERN1_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   HARBINGERN1_AG; Harbinger superfamily;
KW   nonautonomous DNA transposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-452
RA   Kapitonov V.V. and Jurka J.;
RT   "HARBINGERN1_AG: a family of nonautonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(1), 3-3 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of HARBINGERN1_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   HARBINGERN1_AG copies are flanked by the TAA and TTA 3-bp target
CC   site duplications. This element has 48-bp terminal inverted
CC   repeats.
CC   Putative classification: a Harbinger-like nonautonomous
CC   DNA transposon.
XX
SQ   Sequence 452 BP; 141 A; 95 C; 100 G; 116 T; 0 other;
     ggctggaaat agacgaaccg agatcatcgc ggtaccgcga aaatcgcgta tgacttgagc        60
     tgtcaattat gttataaaat ctgacagata ggcgagataa tcgcggttcg tgtatggaac       120
     catccgaggt ctggtgacga ttgaatgtgc caagaagaaa tatttttcta tcaatttgcg       180
     aatcaaatta tttatttcac atagtttatg caaaataaaa tacaaaactc atttctcgac       240
     acgagttttc acacaaatcc gccagaaaaa gtaaaaataa tcggttcgcg ctaccgcgaa       300
     aatctcagca ataccgaagt tgggtatctc tgcgaaacag caggcgcgat tggaggcgcg       360
     gaagatttga cagctctact gttctacaac tgttataaac aaggcgcgaa tttcgcggta       420
     ccgcgacgat ctcggttcgt ctatttccag cc                                     452
//
ID   HARBINGERN2_AG repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   HARBINGERN2_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Harbinger; DNA transposon; Transposable Element; Nonautonomous;
KW   HARBINGERN2_AG; Harbinger superfamily;
KW   nonautonomous DNA transposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-424
RA   Kapitonov V.V. and Jurka J.;
RT   "HARBINGERN2_AG: a family of nonautonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 18-18 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of HARBINGERN2_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   HARBINGERN2_AG copies are flanked by the ANT 3-bp target
CC   site duplications. This element has imperfect 15-bp terminal
CC   inverted repeats.
CC   Putative classification: a Harbinger-like nonautonomous
CC   DNA transposon.
XX
SQ   Sequence 424 BP; 114 A; 109 C; 106 G; 94 T; 1 other;
     gcgtgcgaac agacggcgtc cacgggcctg cccacgcccg aatgcagagc cgatggcata        60
     cgattctatc ttcaccatta acatgagagg gacagagctt ataccccgaa cgtacccgaa       120
     aggtatgcat gcttcactca tcaggatcta aaggcaagga caaggcaaaa gagacacaga       180
     aaaatttcct cacggctaca catgtccttt tgatgcgttg tctatgcgtc tcgctcggta       240
     tcacagcggc atacggcagg taagcagtac aaatgctgct acctgatacg cacacatgtt       300
     tatcgaacac aactattcgg ttcggctcgg taaacttcac gaggaygccg gaacaaaagg       360
     gcgcagactt tttcatgatt ttgtatgact tcggctgttt tggaccatgc gtgtaggcgc       420
     aggc                                                                    424
//
ID   HaSE1       repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   10-AUG-2012 (Rel. 17.08, Created)
DT   10-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   SINE element from the cotton bollworm: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; HaSE1.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-385
RA   Wang J., Wang A., Han Z., Zhang Z., Li F. and Li X.;
RT   "Characterization of three novel SINE families with unusual
RT   features in Helicoverpa armigera.";
RL   PLoS ONE 7(2), e31355-e31355 (2012).
XX
RN   [2]
RP   1-385
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (27-APR-2012).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 385 BP; 93 A; 85 C; 112 G; 95 T; 0 other;
     gtcgtggtgg cctagtgggt aaaggaccaa cctctcaagt acgagggcgc gggttcgatc        60
     ccaggtcagg caagtaccaa tgcaactttt ctaagtttgt atgtactttc taagtatatc       120
     ttagacacca ttgaccgtgt ttcggatggc acgttaaact gtaggtcccg gctgtcattt       180
     gaacatcctt ggcagtcgtt acgggtagtc agaagccagt aagtctgaca ccagtctaac       240
     caaggggtat cgggttgccc gggtaactgg gttgaggagg tcagataggc agtcgctcct       300
     tgtaaagcac tggtactcag ctgcatccgg ttagactgga agccgacccc aacatagttg       360
     ggaaaagggc tcggaggatg atgat                                             385
//
ID   HaSE2_DP    repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   10-AUG-2012 (Rel. 17.08, Created)
DT   10-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Putative SINE element from the monarch butterfly genome:
DE   consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; HaSE2_DP.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-299
RA   Wang J., Wang A., Han Z., Zhang Z., Li F. and Li X.;
RT   "Characterization of three novel SINE families with unusual
RT   features in Helicoverpa armigera.";
RL   PLoS ONE 7(2), e31355-e31355 (2012).
XX
RN   [2]
RP   1-299
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (27-APR-2012).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. >5000 copies phg.
XX
SQ   Sequence 299 BP; 79 A; 64 C; 80 G; 76 T; 0 other;
     agtcgtggtg gcctggaggt taaaaggccc gcctctcata cgtgagggcg cgggttcgaa        60
     acctggcaag taccaatgtg atcttttccg agtcatatgt actttctaag agtatttaga       120
     caccactgac ggacggtgaa ggaaaacatc gtgaggaaac ctggtcttat aatttcaaat       180
     tataagattg aaatcgccaa cccgtcttga gcaagcgtgg cgattaatgc tctaaccttc       240
     tccatgcgag aagaggcctt tgctcagcag tgggctccga taggctgatg atgatgatg        299
//
ID   HaSE3       repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   10-AUG-2012 (Rel. 17.08, Created)
DT   10-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   SINE element from the cotton bollworm: consensus.
XX
KW   SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; HaSE3.
XX
OS   Helicoverpa armigera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Heliothinae; Helicoverpa.
XX
RN   [1]
RP   1-349
RA   Wang J., Wang A., Han Z., Zhang Z., Li F. and Li X.;
RT   "Characterization of three novel SINE families with unusual
RT   features in Helicoverpa armigera.";
RL   PLoS ONE 7(2), e31355-e31355 (2012).
XX
RN   [2]
RP   1-349
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (27-APR-2012).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 349 BP; 86 A; 78 C; 103 G; 81 T; 1 other;
     aagaagagct cttggctaag tcaaagccgc gcggatcgat cgatcataag gttaagcaac        60
     gcttggcgcg gtcggtccgt ggatgggtga ccatcttgtc ataatgagtt cttccgtgtt       120
     tcgganggca cgataaactg taggtcccgg ctgccatttg aacatctttg gcagtcgtta       180
     cgggtagtca gaagccagaa agtctgacaa ccagtcttac caaggggtat cgggttgccc       240
     gggtaactgg gttgaggagg tcagataggc agtcgctcct tgtaaaacac tggtactcag       300
     ctgcatccgg ttagactgga agccgacccc aaaatagttt ggaaaaggc                   349
//
ID   hAT-10_DBp  repbase;    DNA;    INV; 2428 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-10_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2428
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 615-615 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(285..419,495..2258)
FT                 /product="hAT-10_DBp_1p"
FT                 /note="hAT transposase."
FT                 /translation="MSRQNXYKSPRCFGHTMVYIYVWVHTCTRVFFNYYFL
FT                 LRSSSFHFLQHTKSGKSVIWTILXDILQEDQTVLQGWIFCNTCRKVLKFVA
FT                 NQTSNLSRHKCCLSLRHPKEAKKVSTLDKKTAIEKCSEWVVQDCRPFSAVS
FT                 GTGFRNLVEFFVKIGAAYGANVDIDDLLPDPTTLSRNAEKEAEEKRNLISK
FT                 EVKEAVDNGEVSATIDMWSDQYVNRNFLGVTLHYLKDFKMIDIILGLKSMD
FT                 FEKSTAENILKKLKTIFSQFNVENITNIKFVTDRGSNIKKALNNNVRLNCS
FT                 THLFSNVLEKSFEESHELQEILQLCKKIVKYFKKANLQHGLNTTLKNSCPT
FT                 RWNSNYTMIKSIVDNWTTINEILGDTEWVTKLTSINVYSLKIILILLDDFE
FT                 RIFKELQTCSSPSLCFVLPSITKIKTLCEPQPEDFSSISVLKERILVNVNT
FT                 IWEKNLSIWHKTAFFLYPPAAIMEHEDIVEIKSFCLEKMHYFNDKTNEFPG
FT                 GNSFSSNESRPGSPNVQLATSSKNQTIVPKNKFFFSHLVAYSNNGTKSAFE
FT                 ELESYCTERVALCEDFEPIEWWQSKKSCYPLLSKLALQLLSIPSSSAAAER
FT                 VFSLAGNIITEKRNRLGPDTVNNLLFLHSYINKFQ"
XX
SQ   Sequence 2428 BP; 878 A; 403 C; 443 G; 699 T; 5 other;
     cagagaactg caagggtgtc aatttttgcc accttactca caccccatac aactgttgtc        60
     tcggtgcaac tcatacctgc ttaagcaaag taaaaaccca cactcatcaa acatgttgtg       120
     tgtggcatga gtgccggaat ttttaagcac ccggtcatac aggtgccgat gttattttga       180
     cttttcacct attctgtttt gagctacgcg tgccggtcac actcgcacaa aaaaggaaat       240
     tagaaagagg cacaagtaac aaaaaaagca ggacgcaaat atgcatgagt aggcaaaacm       300
     catataaatc acccaggtgt ttcggacaca ccatggtgta catatatgta tgggtgcaca       360
     catgtacacg ggtgtttttt aattattact ttcttttgcg ttcaagttca tttcattttt       420
     gattctgtct ggaaagatta caatgtcgtc ggaaataatt aaaaataaaa tagagcgtgg       480
     tgaatacacc gtaactccag cacacaaaaa gtggaaaaag tgtaatatgg accatattaw       540
     gtgatattct acaagaagac caaactgtcc ttcaaggctg gatattttgc aatacatgca       600
     gaaaagtttt aaaatttgtt gccaaccaaa cttcgaattt gtcaaggcac aaatgttgtc       660
     tgtctttgag acatcctaag gaggcaaaaa aagtttcgac gttggacaaa aaaacagcca       720
     tagagaagtg cagtgaatgg gttgttcagg attgtcgccc gttttcggca gtaagcggga       780
     ctggatttcg aaacctggtg gagttttttg tgaaaattgg agctgcatat ggggcgaatg       840
     tagatattga cgatctactg cctgacccaa ctacattaag ccgaaatgcg gaaaaagaag       900
     cagaagaaaa gcggaatttg atctccaagg aagtaaaaga agcagtggat aatggggaag       960
     tatcggccac tattgatatg tggtcggatc aatacgtcaa tagaaatttt ttgggagtca      1020
     ctcttcatta cttaaaagac ttcaaaatga ttgacataat tcttggacta aaatcgatgg      1080
     atttcgaaaa atctactgct gaaaatattc tgaaaaaact taaaactatt ttttcacaat      1140
     ttaatgtaga aaatataact aatattaagt tcgtcacaga taggggatct aatataaaaa      1200
     aagcgttaaa caataacgta cgattaaatt gtagcaccca tttattttcc aatgtattgg      1260
     aaaaatcatt cgaagaatcc cacgaacttc aagaaatatt acagttgtgt aaaaaaatag      1320
     taaaatattt taaaaaagcc aacttgcaac atggactaaa cactacatta aagaactctt      1380
     gccctactcg atggaattcg aattatacca tgattaaatc catagtagat aactggacaa      1440
     caattaatga aatattggga gataccgaat gggttacaaa acttacaagc attaacgtat      1500
     attcattaaa aataatattg attctgcttg acgattttga gagaattttc aaagaactgc      1560
     aaacttgtag ttctccttct ctatgctttg tgttgccgtc tattacgaaa ataaaaacac      1620
     tatgcgaacc acagccggaa gatttttcat caatttccgt tcttaaggaa agaattttag      1680
     tcaacgtaaa tacgatttgg gaaaaaaact taagtatttg gcataaaacg gcattttttt      1740
     tatatccacc tgcagcaatc atggaacatg aggatatagt tgaaattaaa agtttctgtt      1800
     tagaaaaaat gcattatttc aatgataaaa caaatgaatt tcccggaggc aatagttttt      1860
     cgagcaatga atcacgtcca ggaagtccaa acgtccaatt agcaacaagc tctaaaaacc      1920
     aaacaattgt accaaagaat aagtttttct tttctcatct tgttgcatat tcaaataatg      1980
     gtactaaatc tgcttttgag gaattggaaa gttattgtac agagagagtt gctttatgcg      2040
     aggacttcga acccattgaa tggtggcaat ccaagaaaag ctgttatcck cttttatcaa      2100
     aattagcatt gcaacttctt tctattccat cgagcagtgc agcggccgag agagtatttt      2160
     cattagcagg caatattata accgaaaaaa gaaatagatt agggcctgac accgtaaata      2220
     atttactatt tctgcattcc tacataaata aatttcaata aagtatttat tatattawtw      2280
     tattattttg tattaatttg ttaaacaaaa gaacgcaaga agcgaaataa aataagctta      2340
     tttatttaaa taatataaat agcaggtagg tattgagcag caggtagtga aaaaacaaca      2400
     caagcggaag catgtaaaaa aaaaacaa                                         2428
//
ID   hAT-10_DTa  repbase;    DNA;    INV; 3911 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.11, Created)
DT   28-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3911
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6234-6234 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(937..1290,1218..1952,1960..2523,2549..2995)
FT                 /product="hAT-10_DTa_1p"
FT                 /translation="MRIHNRVFICYSNILLSKVLLYIVTLLVEFNIKGCHK
FT                 FLLKMGRKKNLIHRNFFEFDSVKNLSVCKICHKTFFGNFVTNLRRHLESVH
FT                 GDSVPDEMEKKMMKAPKKKLNFPFVLRRKTRNGKKNDESPEKKIKFSVCFA
FT                 AEDVKDACVELVTSEKVPFSLFDSKAFQFFTDQIFMGVNIPKISSRNIIEL
FT                 VSHKYDSIKNKMISGLKNRMVSLKIDGATRLNRSILGVNLQYYNGSKIVIH
FT                 TLAIIELNVRSTAENISATVSDILKQFAIRKSQVFSITTDNGRNMVKSVEL
FT                 LNTCEDNEGDIASRDDEMDILEGVSIDSVKSVKCAAHTLQLAVKDFMDQQS
FT                 CQIIDNARTLVKKLRTPSYRKSNSLHYLKIIFKFDNYRNLLMNGSFTQPPM
FT                 DVSTRWNSTYSMLKQLLNLRELCEMHVPTPLANEDWDYLKTLVATLKPAYI
FT                 ATKKLQSSQLYMADFNKLWIELKLNIKLMKNSCSDLLAECLEKRDEILLNN
FT                 SVVLCSLFLDPRLRRVLGQNEANRISAVRHLKDLMQQIFAVKNFVCKHEKI
FT                 TKRCVNSPTKSSSSSSSSLSSSSSSSLSSSSLSSSSSLLNEFLNSIPSESN
FT                 EEDSSDEVGAKLREAYWEIESYYPKPIDTTIDVMEYWEKVKFKLPYLYQLA
FT                 RVVHSVPATQVSVERSFSALKLVLSDLRSNISPESLEKILFVKLNNKFNEI
FT                 "
XX
SQ   Sequence 3911 BP; 1355 A; 662 C; 661 G; 1231 T; 2 other;
     cagggaccgt aacagttata agttttactt taaaagtcat cgattaatcg ttattcagca        60
     ccttttattt ataagtcatg acgtaactgt tatttcagac ttttaaaata aaagtcagaa       120
     aataacagtt attttttgac cgaaaaaata aaagtcctcc gtaactttta ttcatgactt       180
     ttataataaa agtctaaaaa taactgttat ttttagactg aaaaaataaa agtcaagata       240
     actcttacga aaagacttat agtaaaaaaa tcattaaata acttttattt ggtgatcgaa       300
     aatatataag tcttaaatat ctgttgctca attggaattg gaattttaaa ggttgcaatt       360
     tgtacttata cacatgaatt cttcaacata ataagacckc gaattcttca gacctagagg       420
     aaccattaat gaccatkgta acaattttta aagttctgac caatacagcc attcataaag       480
     tcataaacat aataagaccg cgaattcttc agacctagag gaaccattaa tgaccattgt       540
     aacaattttt aaagttctgg ccaatacagc cattcatgaa ttcttcaaca taataagacc       600
     gcgaattctt cagacctaga ggaaccatta atgaccatgg taacaatttt taaagttctg       660
     accaatacag ccattcataa agtcataaac ataataagac cgcgaattct tcagacctag       720
     aggaaccatt aatgaccatg gtaacaattt ttaaagttct aaccaataca gccattcatg       780
     aattcttcaa cataataaga ccgcgaattc ttcagaccta gaggaaccat taatgaccat       840
     ggtaacaatt tttaaagttc taaccaatac agccattcat gatgtcataa actcatatag       900
     cgagccttga taattactag cgcgacattg aataatatgc gtatacataa tcgagtattc       960
     atatgttatt caaatatttt attgtcaaag gttttgttgt acatcgttac attattagtt      1020
     gagttcaaca taaaaggttg tcataaattt ttactaaaaa tgggtcgtaa gaaaaactta      1080
     attcatcgaa atttttttga attcgattcc gtaaaaaacc tgtcggtatg caaaatttgc      1140
     cacaaaactt ttttcggaaa ttttgtcacg aacttaaggc gccatctgga gtcagttcat      1200
     ggagacagcg tacctgacga aatggaaaaa aaaatgatga aagccccgaa aaaaaaatta      1260
     aattttccgt ttgttttgcg gcggaagacg taaaggacgc ttgcgtagag ctagtaacgt      1320
     ccgaaaaagt accattttct ctatttgact cgaaggcatt tcaattcttt acggatcaaa      1380
     tttttatggg cgtgaacatc cccaaaattt cttcgcgaaa tataatagag ttggtatctc      1440
     acaaatacga cagcattaaa aataaaatga tttcgggcct gaaaaatcgg atggtgtccc      1500
     taaaaattga tggagctacc aggttaaatc gaagtattct tggcgtaaac ttgcagtact      1560
     ataatggaag caaaattgta attcatactc ttgcaataat agagttaaat gtgcgatcaa      1620
     cagcggagaa tattagtgcc acagtgtccg acattttaaa acagtttgcg attcgtaaaa      1680
     gccaagtttt ctcaattacg actgacaatg gacgcaacat ggttaaatca gtggagctgt      1740
     tgaatacttg cgaagataat gaaggtgaca ttgcttcccg ggatgatgaa atggacatac      1800
     ttgaaggagt ttcaatagac tctgtaaagt ccgtaaagtg tgcagcacac actctccagt      1860
     tagcagtgaa ggacttcatg gaccaacaat catgccaaat aattgataat gccaggacat      1920
     tagtaaaaaa attaagaacc ccttcttaca ggtaactaaa aatcaaattc tttacattat      1980
     ttaaagataa tttttaaatt tgataattac aggaacctgc taatgaatgg atcctttacg      2040
     caacctccta tggacgtgtc aactaggtgg aactccacat actcgatgct gaaacagctt      2100
     ctaaatctaa gggagctttg tgagatgcat gtacctaccc cattggcgaa cgaggactgg      2160
     gactatttga agaccttggt agcaacactt aagcccgcct acatagccac aaaaaaactg      2220
     caaagcagcc agctatacat ggcagacttc aacaagctgt ggattgaact caagctcaat      2280
     attaaactta tgaaaaatag ttgcagcgat ctcttagccg agtgcctcga aaaaagagat      2340
     gaaattttgt taaacaattc tgtggttctc tgtagcctat tccttgaccc tagacttcgg      2400
     cgagttctag gacagaatga agctaaccga atatccgcag tacgtcattt aaaggacctc      2460
     atgcagcaaa tatttgctgt taaaaatttt gtatgtaaac atgaaaagat tacaaaacgt      2520
     tgttaacaaa attttacaac ttttataggt aaattcacca accaaaagtt catcatcatc      2580
     atcatcatca ttatcatcgt catcatcatc atcattatca tcatcatcat tatcatcatc      2640
     atcatcattg ctaaatgaat ttttaaattc aatacctagc gaatctaatg aagaggatag      2700
     tagtgacgaa gtaggagcca aactcagaga agcttattgg gaaattgaaa gctactaccc      2760
     taagccaatc gataccacta ttgacgtaat ggaatattgg gagaaggtta aatttaaatt      2820
     gccatattta tatcaactgg ctagggtcgt gcattcagtg ccggccacac aagtgagcgt      2880
     ggagcgctcg ttttcggcac tgaaactagt tttaagcgac ttaagaagca acataagccc      2940
     tgagtcgctt gaaaaaatat tatttgtaaa actcaacaac aaattcaatg aaatataaat      3000
     tttatattat aaaaatacgt caaatgcatt tttaatattg aacatattcg gtagcactgc      3060
     ggggttcgat tggtgaaaaa gttttactat gtaagagcct atggtttctc taggtctgaa      3120
     gatttcgcgg tcttattatg cttatgactt tatgaatggc tgtattggtc agaactttaa      3180
     aaattgttac catggtcatt aatggttcct ctaggtctga agaattcgcg gtcttattat      3240
     gttgaagaat tcatgaatgg ctgtattggc cagaacttta aaaattgtta caatggtcat      3300
     taatggttcc tctaggtctg aagaattcgc ggtcttatta tgtttatgac tttatgaatg      3360
     gctgtattgg tcagaacttt aaaaattgtt accatggtca ttaatggttc ctctaggtct      3420
     gaagaattcg cggtcttatt atgttgaaga attcatgtgt ataagtacaa attgcaacct      3480
     ttaaaattcc aattccaatt gagcaacaga tatttaagac ttatatattt tcgatcacca      3540
     aataaaagtt atttaatgat ttttttacta taagtctttt cgtaagagtt atcttgactt      3600
     ttattttttc agtctaaaaa taacagttat ttttagactt ttattataaa agtcatgaat      3660
     aaaagttacg gaggactttt attttttcgg tcaaaaaata actgttattc tctgactttt      3720
     attttaaaag tctgaaataa cagttacttc atgaccaatt tcaaaaaagt tacaaaaatt      3780
     taggtcattg cggatctgaa tagaccgcat tagattggtt atgtgacttt tttctctgat      3840
     ttttagtggg atccgaagtg caagattttt ttgattaaaa ataataaaat aactgttatt      3900
     ttcggtccct g                                                           3911
//
ID   hAT-10_LMi  repbase;    DNA;    INV; 3554 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3554
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3035-3035 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1767..3347
FT                 /product="hAT-10_LMi_1p"
FT                 /translation="MRIDRINSLKKKTGQQAMFRKPRENSETVTKLSFQIA
FT                 EAIAKRGKPLSDGEFIKECLEIFASTVCPELMSLVKNTSLSHQTIARRVDD
FT                 MANDIEISLKAKLKECVFYSLAVDESADVSDTAQLAVFVRGVTENYTVIEE
FT                 LLDLRSMKGKTTGQDIYEEVRSCMGKFELQDENLFGLTTDGAPAMTGRRNG
FT                 FVTLMSNSMTHTIVKHHCIIHQEQLCAQVLDLKNVMEKVIWTVNFIRARGL
FT                 NHRQFQTFLSEVGSVHDDIIYYSRVRWLSRSATLSRFYSLLGEIKSFMTGK
FT                 GHDVKFLENEQWLNDLAFLVDITKYLSDLNLKLQGKNQLCVEMYEHIQAFI
FT                 KKLILFEKQIGERQLGHWETLCTRNQETLDFDKYVSLLRKVRNEFEERFSD
FT                 FKNQEPYMKVFQNPFQVKIEDAMLHLQMELTELQTNESLKTAYHSCLQNGL
FT                 MEFYKKYIKPDQYPNLYKLSLQQVSLFGSTYICEQFFSRMKNVKSKTRSSL
FT                 TDGHLSGILRISTSDISPNIEARKKKCYLSH"
XX
SQ   Sequence 3554 BP; 1070 A; 700 C; 771 G; 1013 T; 0 other;
     cagggctgtc caacatatgg cccgcgggcc acaatgtggc ccgccatagc ctgacgaagt        60
     tgtgagcttt tttttttttt tttttttttt tttttttcag ccacagtgtt aagtgaggac       120
     aatgatttga aattaacctg cttcgtcgct gcactcgagc gtaaataaac atgtggggcg       180
     agagggtggt tgcctaccag ctaacctact agctgccctc ttctacaact gttcctgcct       240
     cgcggttctc cactagagcg gcccatttca ctcttccccg gcagccgtat gccgccgagg       300
     cctaacagaa cgcggccgcc ttggaacagg ctggcactgc cacaacatgg gacggctgcc       360
     gcgccgttct cacggtgacc ggcggcgtta tgggggattc gtaaacacgt gtcacgcgca       420
     tgcacactgg ctatacggga gacgagccac agcgtcctct tgccgcagtc actcgctgtc       480
     ttagttcagt cagtgagacg tacggtagac tctctgctgt tgcagtggct gggcgttact       540
     gaacagttag ctctactgtt cgcgggcggt ttattaaagg tatgtaactg tacattattt       600
     gccttaataa attcagtcag tcaacatact agttccaaag gcgaggcgcg cgtgtggtag       660
     agtgtgggtg gctgtatgtg tgggcaagtg gatattagga tgggtccaat ttatttattt       720
     tatttttacg gatcgtttta gtacggaaca tttgtctgtt gtcattataa gaatgacata       780
     ggacaaagac gccgttaacc agagcgggcg gcgtggaaac agacactcct ggcattgttg       840
     ttttcaatac aagaatttct ttcgtggtaa caatcgagaa gttaacagtt acaggtacaa       900
     gctcaataaa atgcaggagt catatactcc actgtagcgg gcgtcctaca tgattttcta       960
     gtctgcgaat gacaccattc ttccatccaa tgttacttgt agtgccatct catgggtggg      1020
     ggagagggga tattaggagg gtttacacca cgattcaatt tacttcaaac cagctcacac      1080
     caattcaatc aatttcaagt aggtttggat cttttgttct accaaaacgg gcgaagagtt      1140
     gcacagaaaa atatgttaca tacggttaaa tttctgtttc gacccactgt aatgtgtatc      1200
     tacttacagt ggggtcgtac acgagctgaa ttgctgggct tatgttacca atatttccgg      1260
     gtttgctcgg aagttgatag aacactgtaa tcttgttaac tgatgtcaaa ttatacttaa      1320
     atctgttccc ctctgacgct cgtagggtta ggaaagaagt caattttatc ataattcaag      1380
     tttcttagat accgactacg cctttccact actaatttat atactttcat tgtggttttt      1440
     gatcgaccaa caagacttac gagaatataa ttttgttcca gaatacacgc acgattccga      1500
     agactggtat atttcttggc tgtatacatt gtcaattaac aatccaggat tgttaatgca      1560
     gtcatgtcat ccatgaagaa gcggaaagtt gacacagaat gtcgcgtttt caaacctagt      1620
     tggactgaat catattttgt gattgaacaa agtggaaaca tactgtgtct catctgtaat      1680
     gaaagaatat cagtttgtaa ggagtacaac ataaagccca ttactctacg aaacatgctt      1740
     ctaagtacga tgaatacagt ggccaaatga gaatcgaccg aatcaattca ctgaaaaaaa      1800
     agaccggtca acaggccatg ttcagaaaac caagagaaaa ctcagaaaca gtaacaaaac      1860
     taagcttcca gatagcagaa gctattgcca aaagaggaaa acctttatct gatggagaat      1920
     tcatcaaaga atgtttagaa atatttgcat caacagtgtg tccggaactg atgtcattag      1980
     tgaaaaatac aagcttatca catcaaacca tagcacgacg agttgacgac atggcaaacg      2040
     atattgaaat ttcactcaaa gcaaaattaa aagaatgtgt attttacagt ttagctgttg      2100
     atgaaagtgc tgatgtttca gatacagccc agctggctgt ctttgtgaga ggagtgacag      2160
     agaactacac tgtaatagag gaactgctgg acttgcgttc aatgaaaggt aaaacaacag      2220
     gacaagacat atatgaagaa gtaagaagtt gtatgggaaa gtttgagctt caagacgaaa      2280
     atcttttcgg cttaacaaca gatggtgcac cagcgatgac agggagaaga aacggttttg      2340
     taactttgat gagtaatagt atgacacaca cgattgtaaa acatcactgc attattcacc      2400
     aagaacagct gtgtgcccaa gttctcgatt tgaagaatgt gatggaaaag gtaatatgga      2460
     ctgtcaattt cattcgcgcg agaggactaa atcatagaca atttcagacc ttcctgtctg      2520
     aagtaggctc tgtgcatgat gatatcatat attacagccg agttcgctgg ctcagcagat      2580
     cagcaacact ctcacgattt tattctctgt tgggagaaat aaaaagcttt atgaccggca      2640
     aaggacatga tgtcaaattt ttggagaatg agcaatggtt gaatgacctg gcttttctag      2700
     ttgacataac taaatatctc tccgacctga atctaaaact ccagggtaaa aatcaactat      2760
     gtgtggaaat gtatgaacac attcaagcat ttattaaaaa actcatcttg ttcgagaaac      2820
     agatagggga aagacagctg ggtcattggg agaccttgtg tacacgaaat caggagacac      2880
     tggatttcga caagtacgta tctttgctgc gaaaagtaag gaatgagttt gaggagagat      2940
     tctcagattt taaaaatcaa gagccctata tgaaagtgtt ccagaatccg tttcaagtta      3000
     agattgaaga cgccatgtta cacctgcaga tggagttgac tgaacttcaa accaatgaaa      3060
     gcctgaaaac agcctaccat agctgcctgc agaatggact gatggagttt tataaaaaat      3120
     atatcaaacc cgatcagtat cccaacctat acaagttgtc acttcaacag gtgtccttgt      3180
     tcggaagcac atatatctgc gaacagtttt tttcacgaat gaaaaatgta aaatctaaaa      3240
     cgagatcttc gctaacagat ggccatctga gcggaattct ccgaatttct acatcggaca      3300
     tatcaccaaa tatcgaggca agaaaaaaaa aatgttattt gtctcattag ttttcctttt      3360
     atttttttca ttaatattgt ctttgaagtt tataatgttc tgttataaat acatcctacc      3420
     tgcctaccta gaaaacagtg ttttatttcc actggtttag taattgattc ctttgcaatt      3480
     ttcttttgtc tggcccgcca cagtgataaa agttggtaat gtggcccgcg tcgaaattta      3540
     gttggacacc cctg                                                        3554
//
ID   hAT-11_DTa  repbase;    DNA;    INV; 4053 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4053
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (02-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1094..1999,2045..2536,2536..3087)
FT                 /product="hAT-11_DTa_1p"
FT                 /translation="MGRKRNTTLLNFFEYNTEKNISECKICKITLTGNYVS
FT                 NLKRHLQAKHRSDYEDDDGSSDDQVEEKKVKFSVTMGRNEAKNACIDLVTK
FT                 QKLPLAVFDSTGFKTLTNQIFCGLNMPAVTSRNIMGLVEERYHSIKIKIVN
FT                 ALKSRIICLKMDTATRCNRGILGVNVQFIENGKIVIKTLGLIELTKSHTSQ
FT                 NLCSEVQSIMDDFCIKKEQIYSITTDNGRNMVKAVDLLNKWEIDDDENPDE
FT                 LQEEELTQHLNIHSIVSIKCAAHTLQLAIKDFFDRLGSVPFIDKARNIVKL
FT                 LRTPSFRCVFSYLIEEEALSKPDLDVPTRWSSKYLMLQRLQTFEHFCERHL
FT                 KSSVKLSATEWSELKNLTKALEPAYLATQKLQSSQLFLGDFYKLWLELKLT
FT                 VAASQLTFCRDLYQCIQKREDGIIEDKMILSSIYLDPRIRRVLLKNPTSVM
FT                 LARANLKQLLLQILNLKRVGNLNLEELYILHYIILQTNSTSEGAISSLALT
FT                 SSPASTSSLDLTTSLTSTTSLATTSTIASTLTNESPNNSSSSLLLDEFLNG
FT                 IEAASGEEEEFNQNEVVQKGFAEIESYFPKPISLDTDIMKFWEENKLRYPI
FT                 LYQLATVVHAVPATQVSVERSFSALKMMLTDNRCNIKSSSLAMLLFVKLNN
FT                 N"
XX
SQ   Sequence 4053 BP; 1391 A; 702 C; 703 G; 1257 T; 0 other;
     cagggaccgt aatcattatg agttttattt taaaactcac ttaataatca ttatttttga        60
     gcaaaacaaa taaaactaaa aaatattcat tacttttgag ttttaaaata aaaatcaaaa       120
     atcattattt ctgatcggaa aaaataaaac tcaaaaataa tgattattgt tgatttttat       180
     ttttttcgct cagaaataaa actcacttgg acgccacggc tttgctgtac cgattttcgg       240
     cgtttttttg catttaccta tgtagcgaat gcagacgtac cacctctgaa aaaaaaaatt       300
     gagcttggct tctgcatccc gttaaatggt atcattcttt tagtcagtaa aggagatact       360
     tctagccttt gtttatgttt atgatgtctt atgttgttta tgtattaaga catggatttc       420
     agtctaaatg ctcttttcct tctcattcta gaagaactac ttaaggccgc gagttcttca       480
     acacaacctg gaaccacatt taccaaaata ccactacttt ttcatatctt cagtagtcca       540
     ctaatctagg tatagaaagt atccacacaa tcagctcctc ttcttcttag gaattcgcgg       600
     tttttgaaga gtcgattaaa atgtcaaacg atttataaga aaaatgtcct tggagaaagt       660
     atcttcttca taagaattcg cggtttttga agaatcgatt aaaatgtgaa acgaactata       720
     aaaaaaggtc cttagagaaa gcatccactt cttcttaaga attcgcggtt tttgaagaat       780
     cgatcaaaat gtcaaacaaa ctatagaaaa aggtccttag attgagtatc gtcttcttct       840
     taagaattcg cggtttttaa aaaatcgatt tcaacataga acctacttaa agacataggt       900
     ctaaatgagt gactaaaatg agtgaacata cagatacgat tttaattatg ttattaggaa       960
     cgcgttcagg tattaagtaa tcagctcaac tttcccagag cgaacaggga gatatatgtc      1020
     agtattcata aagtaacatt ggatctataa gttattaata aaaacaattt atttattttc      1080
     gtgcggtatc aatatgggtc gcaagcgtaa tactacccta ctcaactttt ttgaatataa      1140
     tacggaaaaa aatatttcag aatgcaaaat ttgcaaaatt actttaaccg gtaactacgt      1200
     ttccaacctt aagcgacatt tgcaagccaa gcatagaagt gattatgaag atgatgacgg      1260
     aagctcagat gaccaggtgg aagaaaaaaa agtaaagttt tcagttacaa tgggccgaaa      1320
     cgaagcgaag aatgcgtgca tcgatttggt aactaagcaa aaacttccat tggctgtctt      1380
     tgattccaca ggtttcaaga cattgaccaa tcaaatattt tgtggattga acatgccagc      1440
     ggttacctcc cgaaatataa tgggactagt ggaggaaagg taccattcga ttaaaatcaa      1500
     aattgtaaat gccttaaaat ctcgtattat ttgccttaaa atggacactg caacgaggtg      1560
     caatcgcgga atcctcggag tgaatgtgca gtttatagaa aacggaaaaa ttgttattaa      1620
     gactttgggt cttatagagc taacaaaatc ccatacgtcc caaaatctct gctccgaagt      1680
     tcagtctata atggatgatt tttgcatcaa aaaggaacag atttacagca taacaactga      1740
     taacggccga aacatggtga aggctgtaga tttgctaaac aaatgggaga ttgatgatga      1800
     cgaaaacccg gacgagttgc aagaagaaga gctcacccag catttaaata tccattcaat      1860
     agtttcgatt aagtgcgcag ctcatactct tcagctcgca attaaagatt tctttgatcg      1920
     cttgggatca gttccattta ttgacaaagc acgaaatatt gtcaagcttc tgcgaacccc      1980
     gtcattcagg tgcgtttttt aatatatact caatttattt tattctcaat tctttttcaa      2040
     ttaaagctac ttgatagaag aagaagcatt atcaaaaccg gatctggatg ttccgactcg      2100
     ttggagttct aaatatctta tgctgcagag gctccaaacc tttgaacatt tttgcgagcg      2160
     acatttaaag tcctcagtta agctaagtgc aacagagtgg agcgaattga aaaatctgac      2220
     aaaagcattg gagccggcat acctagccac tcaaaaatta caatccagcc aattattcct      2280
     tggcgatttt tataagctct ggcttgagct taagttaaca gtcgcagcaa gccaactaac      2340
     attctgcaga gatttatacc aatgcatcca gaagagggaa gatggcataa tagaagacaa      2400
     aatgattcta tctagtatct atttggatcc acgcattcga agagttttat taaaaaatcc      2460
     gacaagtgtt atgctagcca gagccaatct taaacaactt ttgcttcaaa tattaaattt      2520
     gaaaagagta ggtaattaaa tttagaagag ctttatatct tacattatat tattttgcag      2580
     actaattcga cgtctgaagg agcaatctca tccctggctt tgacatcatc ccctgcttcg      2640
     acatcatcac tggatttaac tacatcacta acttcgacaa cgtcactggc tacgacatca      2700
     acaatagcat cgaccttaac aaacgagtca cctaataact ctagctcttc cctgctctta      2760
     gatgagttcc taaacggaat cgaagccgcc tctggagaag aagaggaatt taatcaaaat      2820
     gaagtagtac aaaaaggatt tgcagaaatc gagagctatt ttcccaaacc tataagcttg      2880
     gatacagaca taatgaagtt ttgggaagaa aataagctgc gctacccaat tctatatcaa      2940
     ctggccacag tcgtacacgc tgtacctgca acgcaagtta gtgttgagag atcgttttca      3000
     gcactgaaaa tgatgctgac ggacaatagg tgcaacataa aaagctcgtc cttggccatg      3060
     cttctatttg tcaaattaaa taataattaa ctaaaatatt taaataataa tactatttaa      3120
     aataaaataa cacgatataa ttgttttaat attattacca attttgtctt tcttgggtgg      3180
     aaagttgtgc tgattactta attcctgaat aaaaacgtat ctgaaatcga ttttttaaga      3240
     accgcgtatt cttaagaaca acttatactg cagactttgt taaccaattt ctacttacct      3300
     aaaacccttt tctatacatg gtttgatatt taaattagtt ttgcaaaagc cgcgaattct      3360
     tgagaagaag aggataagct gttcttaaga ataagggaca atgcttcttt agattttaga      3420
     gatttcaaac agcggtggca ctttgttaaa tgttgctcca gtatgtattg tcgagctggc      3480
     ggccttcatt ggttaattat ttcgtgtaga ttaagagaga aagaaaagtg catttcgact      3540
     gcaatccatg gttaaataca taaacataat gtttgtttaa atacataaac ataaacaaag      3600
     gctagaagta tctcctttac tgactataag aatgatacca tttaacggga tgcagaagcc      3660
     aagttcaatt ttttttttca gaggtggtac gtctgcattc gctacatagg actatgcaaa      3720
     aaaaacgccg aaaatcggca cagaaaagcc gtggcgtcca agtgagtttt atttctgagc      3780
     gaaaaaaata aaaatcaaca ataattatta tttttaagtt ttattttttc tgatcagaaa      3840
     taatgattat ttttgatttt tattttaaaa ctcaaaaata atgattattt ttgaagaata      3900
     gtataaaaat cccaaaaata aaaatcatgg cgaatatgaa tagattaagc aatgaggatc      3960
     actatggtgt tttccttttt tgcgtatgtc gatcctaagt gcctgatttt ttggttcaaa      4020
     aaataggtca ataatcatta tttacggtcc ctg                                   4053
//
ID   hAT-11_LMi  repbase;    DNA;    INV; 5994 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5994
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3036-3036 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3293..3727,3721..3903,3881..5218,5154..5660)
FT                 /product="hAT-11_LMi_1p"
FT                 /translation="MLASVTCSTSGSETMEASEDKTCCAPTPSGGLIEGID
FT                 TRDVAAEESSSSIVVVCESLTISEDPGRWPLNINSDFVNILVKRGPVQVHN
FT                 HNYPMNDEGRKFADTYYYRNLSNGEKVKRDWLLYSLSKDAVYCFCCKMFGK
FT                 SASSLISDMNGFSDWQHLSLTLKRHETSDSHNENVKSWVQLNNMLQTKNTV
FT                 NQMQLRLIEKGKKTLVRRGKKHWCDVLERIIAVIKFLSRQCLAFRGSSKKI
FT                 YEHDNGNFLKAVEMLASFDSVMREHIRRIESKSDSSRMGMAHYLGDHIQNE
FT                 IIDLLGTMIKNHILKKVRDSKYFSIILDCTPDASHTEQITVIFRHVYLNHT
FT                 DKKVEICEHFIGFCPIMSSTGEGLLNFVLNLFSELNLDIQNLRGQGYDNGS
FT                 NMRGKHNGLQKRILDINKRAFYVPCSAHSLNLVVNDAANISYETINFFDVI
FT                 QEIYVFFSSSTIRWSIICKHLPGLTLKALSATRWSSRIEAIKPLRFYTENV
FT                 FDALLEISEASSSWDCTTTLKAKSLALKIQNYKFICSVVIWYDVLSEINSL
FT                 SKMMQNPTINTQICINLLKSLIDKFTQYRTDENFDIVLKEATNVANKLNAE
FT                 ASFPPVNILRPRKKPTQFQYEHRDEVLLDPKMNFKVEFFFLNSRSNINFLN
FT                 KQIISKWSFFFLILDQTLISLTNRFEELQNLDDVFGFFSSTLFSYPKEELL
FT                 KRCKDLHMKLKDHSRNETDIDGTDLYNEINALRLHFLENQSCDPYTILQYL
FT                 FKNDLISTFPNTAIAIRIFLTLPVSVASGERSFSKLKIIKKLSKINNASTE
FT                 TYKFGYYFNRTRDLGQFRY"
XX
SQ   Sequence 5994 BP; 1935 A; 1107 C; 1152 G; 1800 T; 0 other;
     cagggccgct gggtgcgggc gtgcaaggcg tgcggcgcac gcggcggcct tcctaggggg        60
     gcggcaaatt catccaaatc gctttgatcg gaatcgtttc agtgtctcca tatcagcatg       120
     acacaattat tgcagtttta atcctctcct aagaatgcaa tgtatatctg actgttcgaa       180
     ctaaaatacg aaacgtctgt atgttggaac cacattaaca gcggcaggta ttcctacttg       240
     cgaaggaaca tccccaatgg ggatttccca tattactgag tagaagccgg cagagcggcc       300
     tccagatggc gggtcccgta cagggaatcc ccgggcttct cggcgccggc gggtgcattt       360
     gactgaccaa actccgctct ccagtcactt gttccgagcc gttagcgcga tacacaaagc       420
     cgcacattgt ccgttgattg tttactgcaa ctttttagtt ttataacata caggcggaga       480
     aagaagcgtc aatatggtga gtacggtttt ctattttaat tctactaatt tctaatacta       540
     aatattccct gttttatagt cgctgtttta ataggttaat tgcggacagc agtgtctata       600
     cagaacttta aaccctcagt cggacatagc gttctcccaa agtggccaca acccacaatt       660
     cacctttgac attagaaatt aaatttgcgc tgaagtttgt aacatttgta cagcgatcag       720
     ttaggctaat gttactctaa tatgctttcc tattgccaat aatagcacag ttaatactca       780
     aaataatgta ggcatattta tctccgttta aggaaggagg acataatttt gtgccaatac       840
     gcatttgagt cttgtggtaa actgacttta tgaaattttg tcagtaatat aatcatgatt       900
     tcaagctttc tcatttctta tctatcataa ataggttcgt atacaacctc agttgccttg       960
     acgaattttg ccgccctgta gaataaattc aatgctcctg ccccgcacac ctacatactg      1020
     tatataatgt aactgagtta tttggctgat aacataagca ttgctgcatg gatccacttt      1080
     tatccttttt ttaatgttac tcgtgtcttc tgcttaaaaa cgttttcatg aaaacagaaa      1140
     ttctggacga cgaggcttat cccagtattt tttctaagat tttaattact acatggaaat      1200
     tttttaagtg caagtatcaa ctaagctttt tgttttgatt ggggcagaaa ccattatctt      1260
     acgtggggtg tagccacggg ggtggtttcg tgggttcaaa ccatcgattt ttttttttaa      1320
     ctcgatcgaa tgcaatcagg tacagcagag attcagagat tgctgctgta taccgtggta      1380
     tctgctctac atgtttctgt aggcctaacc ttcaaaatta tacattttat tttattttgc      1440
     aggctagtaa gtctttaaat gcgtccgtgt aaagaaaatg tttccaataa agcaagtttt      1500
     acacacataa ctcgccccac ggaaagtaat aacagaaata aaagagccta tgtggatata      1560
     attgcatgat gcagcagcgc attcaaagga gaggtgactt ccgtaacaaa cgattaacaa      1620
     cggagaaaca ttatcccgcg ctttttacta gttgcttatc atctgcagta catcacagat      1680
     attctcattg ttaaacccaa acgtctatat ggatacaagg tcagccaaaa ccgaatcccc      1740
     attttccaat aaattggcta cactatctac caatgttaaa acagtacagt aagtaggttt      1800
     acattccgta tgacattaac atacataaaa ctggtttcgt atttaggttc attccctccg      1860
     ccttactagc tctgttgcca attgtagcct aaattaataa actcttcgta aaattaagag      1920
     acattgcgta gcgttatcga ccacgttctg gattcgacag tcacttatac gccgggaaaa      1980
     aacgagcgtg tcagaagtgg aaggaaatat ttacacgctc taaaacgcct acagtaacac      2040
     aaaataaaat aactgatatt acaaaataaa atataataga acagaagagt gagcatttaa      2100
     tttaccgtat atttcggctg aaagataaga cgaggtataa attttcgtca aagatacata      2160
     gttttacgtg atgtccgtta tataagacgg accccaaact atcaacgacc tgtaaattta      2220
     gtttagaaca atgatcatct gggtaatagt acgcgcactg tttcgtgtaa tgaccttgag      2280
     tatatataaa agcgtcgtat cggctattca attttatgtt caaatgtgtg tgaaatcttt      2340
     tgggaccaga ctgctatggt catcggtccc taagcttaca cactaattaa actaaattat      2400
     tctaaggaca acacaaacac ccatgcccga aggaggactc gaacctccgg cggaagcagc      2460
     cgcacagtcc atgacaaggc accttagacc acacggctat tcccgcgagg ctcaatttta      2520
     tggacatacc cgctgtgtac ttctaaacaa ttggtacgac tgcacacgtc ataatgcaaa      2580
     cgcctccttt agcattgttg cggtgttgcc tgtagaaaca cgtgccgaat aataaccttc      2640
     tacgtacagc taacaagtat tgttgtaggt tgtgttgtga gtaatgcttt taactggccg      2700
     tctcacagct cttgcttcac gatagtggcc aagcctattg gttcaattgg tctgaaattg      2760
     taaattgaga tcgaagcggc ggcgatatag ataagcgaaa attcagcaaa aaatatcgta      2820
     gaaatatggt agaaaggtta aattctttag agtttgcaat tgtgaggagt tgtatatcca      2880
     cactttcaaa tctaagcagt tgtatgacgc ataaaagagg aaatctctgc attttctaaa      2940
     aatccacccg gatcattttt agagtgcaaa aaagaggacg tctggtaaac cctaaatgta      3000
     ggcaaatgtt taatatctgg tgtataagac gacccagacc ttgcgtaaaa ttttttatgc      3060
     ttatactatc gtcttatctg ccgaaatata cggtacttgt aaatttgttc aaccaagtac      3120
     caacaacaat tttattagtt tcacccaaaa attgtttcag gaaccacaga aaagaaaaaa      3180
     accttctggg gcccagtttc gtaatcagaa acgagagaag gaaaggcaaa aagaaaaact      3240
     ggcaggttct attacgaaat ttttgaccaa atctgtgaat gacggtcaag aaatgcttgc      3300
     ctctgtcacg tgctcgacgt ctggatctga aactatggaa gcaagtgaag acaagacatg      3360
     ttgcgctcct actccctctg gtggtctcat cgaaggcatt gacacacgtg atgttgctgc      3420
     tgaagaatct tcaagcagta tagtggtagt ttgcgagagt ttgacaatta gcgaagaccc      3480
     agggcggtgg cctcttaata ttaatagtga tttcgttaat attttagtta aacgtggtcc      3540
     tgttcaagta cacaatcata attatcctat gaacgacgaa ggaagaaagt ttgctgacac      3600
     ttactattac agaaatcttt ctaacggtga aaaagttaaa agagactggc ttctttactc      3660
     tttatcaaag gatgcagtgt attgtttctg ttgtaaaatg tttggcaaga gtgcaagtag      3720
     tctgatatga atggattttc agattggcag catttatcat tgactctgaa aagacacgaa      3780
     acaagcgatt cccacaatga aaacgtgaag tcatgggtac aattgaataa tatgttacaa      3840
     acaaagaaca ctgtaaatca gatgcaactg agactaatag agaaggggaa aaaaacactg      3900
     gtgtgatgta ttagaaagga ttattgctgt tattaagttt ttgtcgcgac aatgtctggc      3960
     ttttcgcggt tcttccaaaa aaatatatga acatgataat ggaaattttt taaaagcagt      4020
     agagatgctg gcatcttttg attcagttat gcgggaacat attcgcagaa ttgaatcaaa      4080
     atctgactca agccggatgg gtatggccca ctatttagga gatcacattc aaaatgaaat      4140
     tattgattta ctaggcacaa tgataaaaaa ccatattttg aagaaagtta gggactctaa      4200
     atatttttcc atcatattag actgcacacc agatgcaagc catacagaac aaataacagt      4260
     aatatttagg catgtttatc taaatcacac agacaaaaaa gtagagatat gtgaacattt      4320
     cattggtttc tgcccgatta tgagttcaac gggcgagggt ttgttaaatt tcgttttgaa      4380
     tttattttct gaattgaacc tggatattca aaatttgcgc ggacaaggtt atgacaatgg      4440
     ctctaacatg cgtggaaaac acaacggact gcagaaaaga attctggata tcaataagcg      4500
     tgcattttac gtcccatgct cagctcatag cttaaactta gtggtaaatg acgcagcaaa      4560
     tatttcgtac gagaccatca atttcttcga cgtaattcaa gaaatttacg tcttcttttc      4620
     atcatcaaca attaggtggt caatcatttg caaacattta ccagggctaa cgctaaaagc      4680
     tttaagtgct acgagatggt ctagcagaat tgaagcaatc aagccattac gtttctacac      4740
     agaaaacgta tttgatgctc tgttggaaat ttcagaagct tcttctagtt gggattgtac      4800
     caccactctc aaagcgaagt cacttgcttt aaaaattcaa aattataaat tcatttgttc      4860
     tgttgtaatc tggtacgatg ttttgagtga aattaattct ttaagtaaaa tgatgcaaaa      4920
     cccgacaatt aatactcaga tatgcatcaa tttgttaaag agcttgattg ataaattcac      4980
     acaatatcgc acagatgaaa actttgacat agttttaaag gaagctacca atgtggcaaa      5040
     caaactaaat gctgaagcaa gtttccctcc agtaaatata cttcgcccaa gaaaaaaacc      5100
     gactcagttt cagtatgaac atcgtgatga agttttgtta gaccccaaaa tgaatttcaa      5160
     agtggagttt ttttttctta attctagatc aaacattaat ttccttaaca aacagatttg      5220
     aagagttaca aaatttagac gacgtttttg ggtttttcag tagtacatta tttagttacc      5280
     ctaaggaaga actgctgaaa cgttgtaaag atttgcatat gaaacttaaa gaccattcaa      5340
     ggaatgaaac tgacattgac ggtactgatt tgtacaatga aattaacgct ttaaggctgc      5400
     atttcctaga aaatcagtct tgtgatccat atacaattct tcaatatctt ttcaaaaatg      5460
     atttaatatc aacttttcca aacacagcaa tagcgataag aatatttctt actctgccag      5520
     tctcagttgc atcaggtgaa agatcatttt ctaaattaaa aattataaaa aaattatcta      5580
     agatcaacaa tgcatcaaca gagacttaca aatttggcta ttatttcaat agaacacgag      5640
     atcttggaca gtttagatac tagacagata atagaagatt ttgcaattat gaaagcaaga      5700
     agagttcaat ttgtgtgaat acatgtaagt gtcgaagaaa ctttcactca agtcagcaaa      5760
     ctaactagaa ttaaagtatt cttggatttg ccaacaatga ttctcattta tatgcaatag      5820
     ctaatgaatt agtatgttta tggattttct ttttgtaaaa attattatta aagaaatttt      5880
     atatcacgaa aatgccgatg atgagtcttt atacgagtgt gaaaaaaaaa tggttttgta      5940
     ggggggcaaa atctggttcg cacgcgggcg ccatgggggc aagcagcggg cctg            5994
//
ID   hAT-12_DTa  repbase;    DNA;    INV; 2958 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2958
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6235-6235 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(360..950,1019..1291,1444..1821,1939..2424)
FT                 /product="hAT-12_DTa_1p"
FT                 /translation="MNKEVHFFFKFEKSVNKSTCNICGAKLAGNHLTNLRR
FT                 HLITKHKDAFDALKDNNIKTTIAKKRKISYETSEESITSSLVEMVTTDGRP
FT                 LILLDSNGFRGIMSPIYNALHMTPITSRNIMDHVRAREIAIKNEIKSLVKR
FT                 KLVSLKIDAATRLDKSILGINLQTMRSTFQKNEIIIKTLGMVELNXSXTGM
FT                 YIKKVRILASDNGRNMVKAVELLNDDAVQELSRDDDKGNDVLDMLDTMSFN
FT                 NVQLVRCAAHTLQLCVYDVNRKDEISSKVHECRQICKTLRSGKYRYFRALL
FT                 LSESTICIDADWEWVELYLNAFKDAYDTTLKLQQEQLAYSDFFIAWMELKL
FT                 KCQNSQNVIAKALLAQLQLREPKLLENEALLSAIYLDPRINLFLTDHQKKS
FT                 AKQNLKTIAKRYFNLNQVRQILSSYMSLIYIYIYILYNFPISIKIDANSES
FT                 DAASLAPSSSSSLDDSQGSSLFSSLLDGIQSVKEERGEEVSDKLSNIYLEI
FT                 ENFNSVHDRLPLTANIMDFYGDLKFKSPHLTEVAKVVLATPASQVSVERSF
FT                 SALNFILTERRSSLSADNINSLLIVKLNL"
XX
SQ   Sequence 2958 BP; 957 A; 554 C; 577 G; 863 T; 7 other;
     cagagctcgt aaaaaaaggt ctcattgtgc ttgttgtcag aaaaaaaccc ctcacatact        60
     gaccccatac gaagctgtca gagagagacc ctaaaatttc gtttgcctta gacttgctct       120
     ctgctcaacc ggtgagagat ttcgtttgct cggtcgggtc tctgctcacc cgagaccctt       180
     ttcgtcgtaa atattcggaa aaggtctttt gagcatgtat gtgtgcttct cgtatagctc       240
     ggtaaaaatt tttaggcagc ttgtacgtat gtgtgctgtc atatagctcg gtaaaaattt       300
     ttagtcagtc ttattgacta aattgagacg gacgctgtga attgtgataa cttcataaaa       360
     tgaacaagga agtgcatttt ttttttaagt ttgaaaaatc ggtcaacaaa tcaacgtgca       420
     acatatgtgg cgccaaactg gctggaaacc atttaacaaa cttaaggcgg catttaataa       480
     cgaagcataa ggatgccttt gatgcactta aagataacaa tatcaagaca accatagcaa       540
     aaaaacgcaa aatttcgtat gaaacaagcg aagagagcat aacatcatcg cttgttgaaa       600
     tggtcaccac tgatggtaga ccattgattt tattggacag caacggcttt cggggtataa       660
     tgagtcctat ctacaatgct ctccatatga ccccaataac ttcgaggaac ataatggacc       720
     atgtaagagc tagagaaatc gcgatcaaga atgaaattaa gagtcttgtt aagcgaaagc       780
     tagtatcgct caaaatcgac gcagcgacta gattggacaa atctatttta ggtataaacc       840
     ttcaaacaat gcggtccaca ttccaaaaga acgaaatcat cattaaaact ctcggaatgg       900
     tcgagctcaa tcawtcccaw acaggaatgt atataaaaaa ggtaaggata taattaatat       960
     tgataccawt ttttwwaata ttkaatgata actgtattaa taaataaact gccattaact      1020
     agcatccgat aatggccgaa atatggtgaa ggctgttgag ctgttaaatg atgatgcggt      1080
     acaggagctk tcaagggatg acgacaaggg caatgatgtt ttggatatgt tagataccat      1140
     gtcatttaac aatgtacaac tggtgcgatg tgctgcgcac acattacaac tgtgtgtgta      1200
     tgacgtgaac aggaaggacg agatcagcag caaggtccat gaatgccggc aaatatgcaa      1260
     aactctgcgt tcgggaaagt ataggtattt ttaactgttt ttttttattt ataaagtaaa      1320
     agtgatgaaa ttgaactctt tgcagacgca ctttaatgga gcataagcag acaattccca      1380
     ctctggatgt caccactagg tggaactcaa cttatttaat gttggaaaaa ctaatggact      1440
     tgaagagctt tattgctttc ggaaagtacc atttgtatag acgctgactg ggagtgggtt      1500
     gaactctatc ttaatgcgtt taaggatgcg tatgatacaa ctctcaaact gcaacaggag      1560
     caactagctt acagcgattt ttttatagca tggatggagc taaagctgaa gtgccaaaac      1620
     agccaaaacg tgatagctaa ggctttgtta gctcaactcc aattgcgaga accgaaattg      1680
     ctcgaaaacg aagcgttgct ttcagcaatt tacttagatc ctagaattaa tttattttta      1740
     accgatcacc aaaaaaagtc agcaaaacaa aacttaaaaa caatagctaa gcgctatttt      1800
     aatttaaatc aagtaagaca gtagacagta ggacaagtag aatgtaaaaa agaattgaaa      1860
     acgtagaagt ctcgtgttgt agaagtaaat atgtgtttgt atatttatgt ttttagctag      1920
     tgatatcgtc ctcgttaaat actaagtagt tatatgtcat taatttatat ttatatttac      1980
     atattatata atttccccat atctattaag attgatgcta acagtgaatc ggatgcagct      2040
     tccctggctc cttcctcgtc gagcagcctt gatgactctc aggggtcatc ccttttttcc      2100
     agccttctgg acggaattca gtcagtgaaa gaggagaggg gagaagaagt ttccgataaa      2160
     ctatcaaaca tctatttgga aattgagaac ttcaattctg ttcatgaccg attaccatta      2220
     acggccaaca taatggactt ttacggcgac ctcaaattca agtcaccgca tttaacagaa      2280
     gttgccaaag tggtgctagc cacacctgct tcccaagtat cggtggaaag gtcattctcg      2340
     gcactcaatt tcatacttac cgaaagacgc tcctcgttaa gtgcggataa tataaattct      2400
     ctgttaattg taaaactaaa tttgtaatat aaaatataat atcagtaatt ttagttgtaa      2460
     taatttattt ataataaaaa cattactaca tttcaaaata ttacgttttt ttggcgccta      2520
     tatatttcta ttttattgat tcacaggagt atgcgtataa cgcagaaaaa tcgctctata      2580
     atttttgttt tatctatctc tctctctttc gctctctccc aaatgctttc cctgtcacaa      2640
     aatatctggg acaacaacac aagcaatccc agcaacaaaa ataaagacct tttgtaggag      2700
     accctttgtt gttttgctca cctacttact gtcaatatat gagcgacgaa cgattttgtt      2760
     cgtatcgagc ggtcagttgg ggaccgatcc gagtgttccg gtcaaccgaa acccgagacc      2820
     gagaccgaaa ccgagaccga gaccgaaacg aaaaaagggt tgttgctcag accctgagct      2880
     agacattctc aatttttggg tctttcaact gagcagcccg attagaaaaa ttcggttgac      2940
     cgttttttac gagctctg                                                    2958
//
ID   hAT-12_LMi  repbase;    DNA;    INV; 2802 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2802
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3037-3037 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(734..1210,1195..2508)
FT                 /product="hAT-12_LMi_1p"
FT                 /translation="MQHIKKKHLLAVSARTSSSITSFVSTNKLQTEEDKRI
FT                 AAEEGLFAFHTAKHNHSFRSMDCTALLIRDLFEKKFTCSRTKCESILVNVL
FT                 SPYAMHEVQSELKDAKYVSVMVDASNHKSLKLVPILARYFIPTKGVQCKVI
FT                 CLQNIGGETAELLTSYILDILYSGYLKKQNIVDKIVAFCADNCNTNFGGCK
FT                 RAGTNNVYSKLNSVLKMNIQGIGCAAHVVHNGVQTSADILPIDIETIVNKI
FT                 FQYFHIYTVRVEELKSFCDFVDTEYKQVLGSIKTRWLSLLPGVKRVIDMYD
FT                 PLKSYFLSQDRCPTLLKQFFENPQSLLWLHFIQSQLKIFSNSIQKLERTNI
FT                 SATETAEELELLKEKISNRKLSKFQTSVISSILINLEKEGIFTQSKYETIT
FT                 NLFYDTFLTYLEKWTSPFQPLKSFHWISLKDPICWTEVLNCLKIVETVDSG
FT                 ATFQMDEDVLFDEIGFVNNIVCKKHEEWEKANLETDKRWCDVFHTLKSTDT
FT                 SCKNIETLVSFALAVPGTNAVVERVFSIVNSLWTDEKNRFTTETIEAIVIV
FT                 KTHYEDLTCKEFYNLLLTNSKLLKDIRSSDKYKLSAGSSVHDTGAQQSTD"
XX
SQ   Sequence 2802 BP; 859 A; 467 C; 561 G; 915 T; 0 other;
     tagggtgacc agacgtcccg tttttgacgg gactgtcctt tttttcgttt gtgtcccgtt        60
     gtcccgcaaa atatttaacg ggacgccaaa tgtcccgttt tttcgcagca gcagaacctt       120
     atttgtgtgt tttttattta ttctcacgtc aatttagatt ataacatggt ttatttaact       180
     ttctcctggg tcttgctttg tcttaatgca aagttagaat aaagaagtat tattttggtc       240
     acggaatgag gtgatgtgtg aacaaatttt tcattatcgt gctctgtgcc agtaaattat       300
     gcgtgaggta ggcgattcat atcgattatt tgctactgca gtaattacag acagaactaa       360
     caagttttcg ttgaagaact ttgtagggct atcaacgctc cactgtattt gtagttacga       420
     atgactatcc actgttagat cacataaatt tgcagatcca actgacatta tgtctttgga       480
     ctgttaagga caacaatgag aagtaggcgg ctgtttgaac actgtgttcg gccagtttgc       540
     tttattgcgc tccattgtct gtcgttgctg tgtgtgacaa acctggtgcc cttagaatgg       600
     ggaaaagaaa gtgttctttc tcgaaaacca agaaagacga gttcccttct tgaaggaaat       660
     cacgagtacg aaggtagaat gtacattgtg tcgttcagtt ttttccattg aacatggagg       720
     acgtgccgat ataatgcagc atataaagaa aaagcacttg ttggcagttt ctgcgagaac       780
     gtctagcagc ataacttcct ttgtaagtac gaataaacta caaacagaag aagataaacg       840
     tatcgcagcg gaagaagggc tgtttgcgtt ccatactgca aaacacaatc attctttccg       900
     ttcaatggac tgcacggctc ttctcatcag agacctattt gagaagaaat tcacgtgttc       960
     taggacgaag tgtgagtcga ttttagtgaa cgttttatcg ccgtacgcaa tgcatgaagt      1020
     tcagtcagaa cttaaagatg ctaagtatgt gtctgtgatg gttgatgcat caaatcacaa      1080
     aagcttaaag ctagtgccaa ttctagctag gtatttcatt cctacaaaag gtgttcagtg      1140
     caaagtaatc tgtcttcaga acattggtgg agaaacggca gaattattaa ctagctatat      1200
     tctggatatt taaaaaagca aaatatagtt gacaagattg tcgcattttg tgcagataac      1260
     tgtaatacca actttggtgg gtgcaagagg gcaggaacaa acaatgttta ttccaaactg      1320
     aacagtgttc tcaagatgaa cattcaaggc atcggttgtg cagcccatgt ggtacacaat      1380
     ggagttcaga caagtgcaga cattcttccc attgacatcg aaacgatagt gaataaaatt      1440
     tttcagtatt ttcacattta cactgtgcgt gtggaggaac tgaaatcatt ttgtgatttt      1500
     gttgatactg agtacaagca agttctaggt agtattaaaa ctagatggtt gtcattgttg      1560
     ccaggagtta aaagagttat tgatatgtat gatcctctga aatcatattt tctgtctcag      1620
     gataggtgtc ctacattgct gaaacagttt tttgagaatc cacagtcact cctttggctt      1680
     catttcatac aaagccaatt gaaaattttt tccaattcaa ttcaaaagtt ggaaagaacc      1740
     aatatttcag ctacagaaac agctgaggag ctggagctgc ttaaagaaaa aatcagtaac      1800
     aggaaattga gtaaatttca aacatcagtt atttcttcaa ttttaattaa cttggaaaag      1860
     gaaggtattt tcactcagtc aaaatacgag acaattacca atttatttta tgacactttt      1920
     ttgacttatt tagaaaagtg gacttctcca tttcaacctc tgaaatcatt tcattggata      1980
     tcactgaaag atcctatttg ttggactgag gttttaaatt gtctgaaaat tgttgaaaca      2040
     gtagattcag gtgcaacatt tcagatggat gaagatgtat tgtttgatga gataggattc      2100
     gtgaacaaca ttgtatgcaa gaaacatgag gaatgggaaa aagctaattt ggaaaccgat      2160
     aagagatggt gtgatgtatt ccatacactt aaaagtacag atacttcatg taaaaatata      2220
     gagacacttg tgagttttgc tcttgctgta ccaggcacaa atgctgttgt ggaaagggta      2280
     ttttccattg taaattctct ttggactgat gagaaaaacc gttttaccac tgaaactatt      2340
     gaagcaattg taatagttaa gactcattac gaagacctta cctgcaagga gttctacaac      2400
     ttgctattaa ccaattcaaa gcttttgaaa gatattaggt cttctgataa gtacaaactt      2460
     agtgccggta gtagtgttca tgatacagga gctcaacagt ctacagatta gtgttcattt      2520
     gttagaaatc tttctatcag ttactcgata ttctgaatta taatcagttc ctggaaaaac      2580
     aattatcaca ttatgcagtg ccattacaag catgttttga agtgttttgc taaaatatat      2640
     gcctttttat gagtataaac tttagttttt atttatttta gtaaagtgat gcagtcataa      2700
     gtgcacaatt tcttattttt gtttagagtc ctattttgtc cctttttata ccaaattttc      2760
     gcaaatgtcc cgtttttcca cgtggaaaat ctggtcaccc ta                         2802
//
ID   hAT-13N1_LMi repbase;    DNA;    INV; 2180 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; non-autonomous;
KW   hAT-13N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2180
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3038-3038 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 2180 BP; 585 A; 481 C; 473 G; 641 T; 0 other;
     cagggccggc gcaaggcacg tgcgaaacgt gcggccgcac ggggcggcac tttccggggg        60
     gcggcaaatc tgcccccccc ctttttttct gtagtacaaa ctcaacattc attcccaaga       120
     ggggattcga aaccaaacct cggagggagc ggcttcggga actgtggcat ggcgtctcga       180
     ctacctgccg gccgcccctg ttgaacaagg ggagggagga gggctaattt cttcctcgcc       240
     actgtggcag caccgtcgtg tttacgccgg aagggaagca gtctggcgca cacgccagta       300
     ttcttatgag tggagcgctg ccagcgtgtt acgcgccgtg cgtttactca caactaattt       360
     tgcaggagac gaaatctaat ttggaaattc gaatgcaatg ttcgatactg cggttacatg       420
     ttaagcctga agcaattttg ctaagccctt caatggcagt tcgagtgttt tattcttccc       480
     gcgctatgga aaaaaaaatg ttgaacatta ctacagtcaa acatgttcaa cacctacaat       540
     ggctagaagt attccgaatg ggtaaatacg ctgtgagtaa ttacaaggga taaagacatt       600
     ggtagtaagc ctggcataag ttgggtttcg acgtattttt gaaaatgttt gctatccgtt       660
     tctgagtgat agtcggacgt tttggttttt gagccctgaa acacctgtct ccgcctgcat       720
     gaacaaacaa ttaaactctg accagcactt ttgtgtgaca atactactcg cacactatca       780
     ctttgccaac atttatttac tgtataatgc gtgtgaatcc atgtttcgtc taagtaaact       840
     actggtcgct ttgattctga tgaaaacctg agaaagtatg gtcttttagc aacaatgcct       900
     tctcgtccgc gcgaaacaaa acgttaattt tgacaccttg taaaacgaaa atccatagac       960
     agaacattgc ttctaagggt ttccttgcta gctttgaagc tcatttctgt ttgacaaaag      1020
     ttgtgcagtt ttcgcaaagt tcgtatttct ttctattgtt cgtaatgcta taaaaattac      1080
     tgcctgataa tacatttatc catatcatcg gtcacatact tattgtgagc ttcttgcttc      1140
     ttcttcttgg gcgctagttt aaccgtagcc tcgctgtacc tcgtcacgtg acctagttcc      1200
     tggcactgcc gcgtcaccac ttcgcctttc cagacaatag gtattgttgc gttctctaca      1260
     acgaaaacta cagaaatcgt ttcgatagtt ggccgagaga gtcaagattg gtcagaagca      1320
     ctttcattgc gtttcgcaag aacagaagaa ttggtgcgtc cgaatttctt gcaacttggg      1380
     atgtaatagg taagtgcttt tcatataacg tacaattagt attgcgcatg cacgttactc      1440
     ataagttaga atttttctcc ttcaagaatg cagaatagga aaatttattt ttcttatgat      1500
     ctgttacttc aaaaaattgg caacttggca agtcggcaaa taagcacgcg tcaccccaat      1560
     agctagaatg aaaataaagc gcagaaaagt gacgtgatac ggcgatgact aatttgttac      1620
     cccttattcc ataatcagac acgacagaac tgacacatgc aaattacgac agatggcgag      1680
     tgtcagttct ttgaaatgaa caaccgcagt gcagtgagtt aatatatttc gactagcatc      1740
     agtacccgtc gattcccgag tgtgtattta ttgcattatt atgttactcc atctccttat      1800
     tcttcctctc tccattgtct tccgccccac tctttggccg tttcaactgt ttttattttc      1860
     cagatcttca tagatttctg gcacagagtg gctattctca atgctttgag ttatgtttac      1920
     atctataccg tcgtgctgaa cgtaactgtc aacatgacgg tttagatgta agcacatatt      1980
     aaaagctttg aaactggcca ctcagtggcc gaaacctagg tagatctgaa aagtaaaaac      2040
     aaaaattgcg attgattgct gacttttcct acagatttgt ttaaataaaa tttcacaaac      2100
     gttttgtaaa aaaaaaaacg gggggggggc ggcaatttag cagctcgcac ggggcggcac      2160
     ttgggcttgc gccggccctg                                                  2180
//
ID   hAT-13N2_LMi repbase;    DNA;    INV; 1562 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; hAT-13N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1562
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2921-2921 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1562 BP; 400 A; 336 C; 379 G; 447 T; 0 other;
     cagggccggc gcaaggcacg tgcgaaacgt gcggccgcac ggggcggcac tttccgaggg        60
     gcggcaaatc tgccgccccc ctttttttat ttttttagga caaactcaac attcatgccc       120
     aagaggggat tcgaaaccaa acctcggagg gagcggcttc gggaactgtg gcatggcgcc       180
     tcgactacct gccggccgcc cctgttgaac aaggggaggg aggaggacta atttcttcct       240
     cgccactgtg gcagcaccgt cgtgtttacg ccggaggaac agagaggggg aagcagtctg       300
     gcgtacacgc cagtattctt atgagtggag cgctgccagc ctgttacgcg ccgtgcgttt       360
     actcacaact aattttgcag aagacgaaat ctaatttgga aattcgaatg caatgttcga       420
     tactgcgatt atgtgttaag cctgaagcaa ttttgctaag cccttcaatg gcagtttccg       480
     agtgttttat tcttcccgca ttatggaaaa aatcgttgaa cattactaca gtcaaacatg       540
     tccaacacct acaatggcta gaagtattcc gaatgggtaa atacgctgcg agtaattaca       600
     agggataaag acattggtag taagcctggc ataagttggg tttcgacgta tttttcaaaa       660
     tttttgctat ccgtttctga gtgatagtcg gacgttttgg tttttgagcc atgaaacacc       720
     tgtctgcgcc tgcatgaaca acaattaaac tctgaccggc acttttgttt gacaatacta       780
     ctcgcacact atcactttgc caacatttat ttactgtata ctgttttccg ttgaatacat       840
     tatctgttca caaccactga aaaatgttta tttacgttaa ttttgtaagt tcatgccgcg       900
     cgggattagc cgagcggtct aaggcgctgc agtcatggac tgtgcggctg gtcccggcgg       960
     aggttcgagt cctccctcgg gcatgggtgt gtgtgtttgt ccttaggata atttaggttg      1020
     agtagtgtgt aagcttaggg actgatgacc ttagcagtta agtcccataa gatttcacac      1080
     acatttgaac attttcgtaa attcacaagg cttattaaaa ttagctagat ttcttcaatc      1140
     aggtttgact ccatttttga gctggtgccc agcgactgtt ttgtacaaat ctgtagagaa      1200
     tgtcaccaat cagtcgcaat ttttgttttt attttccaga tctacataga tttcgggcac      1260
     agtgtggcta ttctcaatgc tttgagttat gtttacatct ataccgtcat gctgaacgta      1320
     actgtcaaca tggcggttta gatgtaagca catattaaaa gcttttgaga ctggccactc      1380
     agcggccgaa acctaggtag atctgaaaag taaaaacaaa aattgcgatt gattgctgac      1440
     atttcctaca gatttgttta aataaaattc cacaaacgtt ttgaaaaaaa aaaatcgtgg      1500
     ggtggggggg gcggcaattt agcagctcgc acggggcggc acttgggctt gcgccggccc      1560
     tg                                                                     1562
//
ID   hAT-13_DTa  repbase;    DNA;    INV; 3538 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3538
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6236-6236 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(503..577,872..1686,1748..2228,2307..2591,
FT                 2852..3034)
FT                 /product="hAT-13_DTa_1p"
FT                 /translation="MRGSTECDMGNTFGQENPLYILAQWSFAGSYLSNLKR
FT                 HLSDHHKNVFDKDXHDRKTIIEKDSKIKFSVSMTKSEVTEACIDLVTSEKM
FT                 PFSVLDSEAFTTLTGQIFDGLNMSPVSSRNIMTLIARKYNELKDSIKLLFK
FT                 NQIICIKMDTATRCNRGILGINAQMYHNNRICVKTLGLVELHQRHSGSNLC
FT                 SEIEDILNEFNISKNQIYSITTDNGRNMIKAVSLLNEDPAXNMDGNEFNDD
FT                 DDDLIKNXELFSITSVKCAAHTLQLSVKDFLNNPECIKIIEKARAVVKMLR
FT                 TPSCRYKSCAQGLPLPVMDVPTRWGSTYLMFQRLLDYEAFCKNEYDDLSKL
FT                 TATDWSMIRTMCNTLEPLFVATKKFQSEQMFLGDFYKIWLELKLAVKAMGT
FT                 SNKVLVDCLQKREDTLLENHIVICAVYLDPRIRRVLNKNPQDIIRARSQLK
FT                 QLYLQIHAVYNKSDSRQNIPEDEPTSCSNQSNSLLKEFLNSFEDIQSVENS
FT                 DAYDEDIKKAYSEIDNFCPKPIDVNTDVMSYWEEKKFVYPYLYQMAKVVHA
FT                 VPATQTKLYNLKKGFTLSWKLTSVVVELILITEPVYTMDFLTKCTHLCTVV
FT                 RICSAVADLGFCCRV"
XX
SQ   Sequence 3538 BP; 1228 A; 563 C; 586 G; 1156 T; 5 other;
     cagggaacga aaataactgt tatttttgtt tttttaaaca aaaaaatcaa cgacaaggaa        60
     gactcataaa aaaaaaaaaa ctataccact gtcattataa aacattgtat tttacatatt       120
     cgcaatgatt tttatttttg caatttttat ttaaaactca aaaaataatc gttattctct       180
     gagttttata taaaaattga caaataacac ttattctctg agttttattt tcckcttgga       240
     aaataacagt tattccttga gttttatata aaaatcaaaa aataaaactt attctctgag       300
     ttttattttt tcgatcaaaa ataaaactca aaatcgttta gtggcggctg tgtaggcgat       360
     aaaaatgttt taaaaaataa ggtatggtat ttgatctatt gggtttattt aaagattttt       420
     accaactgaa aataaccacc ataagtatga ttaattaatt aatttacgtc gcgcaaagga       480
     gaaatccaag ttttaattca ttatgcgcgg atccacggaa tgtgatatgg gtaatacatt       540
     tggtcaagaa aatccattgt atatactggc tcagtgggta agtgtaagct ccacatatat       600
     atatataata tatgtataat aacagtagtt caactccttt tacaattttt tataatttat       660
     tcataaaaga aaattcgtct tgtatgtctc cgcttagacg tcaaaatttt tataatgtgt       720
     tcgtttatat tcatagagtc tagtataagc atctgctccc aaaaaaataa ttttgaatat       780
     taatatggga cgtaaagcct ataacttacc gcgaaactat ttcgattttg atgcaataaa       840
     aaatcaatca atttgtaaaa tatgcaaaaa gagttttgca ggttcctact tatcgaattt       900
     aaagcgtcat ctttcggacc accacaaaaa cgttttcgat aaagacktgc acgatagaaa       960
     aaccattata gaaaaagact cgaaaatcaa gttttctgtc agcatgacta aaagtgaagt      1020
     cacggaggct tgtatagact tggtaacatc cgaaaaaatg ccgttttcgg tgttggattc      1080
     agaagctttt accactttaa ccgggcaaat cttcgatggt ctcaatatga gccctgtttc      1140
     atcaagaaac ataatgacgt taattgccag gaagtataat gagttaaaag actctatwaa      1200
     gttgttattt aaaaaccaaa ttatatgtat taaaatggat acagcaacaa gatgtaaccg      1260
     tggaatttta ggaatcaacg cccagatgta tcataataac cggatttgcg taaaaactct      1320
     cggacttgtc gaactgcacc aaagacattc aggtagcaat ctatgctcgg aaatcgaaga      1380
     tattttaaat gagtttaata tttcaaagaa tcagatatac agcataacca ccgataatgg      1440
     caggaatatg attaaagctg tgtctctttt aaacgaggac cctgcattwa acatggatgg      1500
     taatgaattt aatgacgatg acgacgatct aattaaaaac mtagaattat tttctatcac      1560
     atctgttaaa tgcgctgccc ataccctgca gttaagtgta aaggattttc taaacaaccc      1620
     ggagtgtatc aaaatcatag aaaaagcgcg tgcagtagtc aaaatgttac ggactccgtc      1680
     atgcaggttt gtattaataa tattatatta ctagatggca tatccttaag ttttataaat      1740
     gtttaaggta taagtcttgc gcccagggat tacctctacc cgtcatggat gtcccaactc      1800
     gttggggctc aacatacttg atgtttcaaa gactgttgga ttatgaagcg ttttgtaaaa      1860
     atgaatatga tgatctatca aagttgacgg ctactgattg gagtatgatc agaactatgt      1920
     gcaatacatt agagccatta ttcgtcgcta ccaaaaaatt tcaatcggag caaatgtttt      1980
     tgggagactt ttataagata tggctcgaat taaagctagc tgtaaaagcg atgggtacca      2040
     gtaataaggt attggtggat tgccttcaaa aaagagaaga tacccttttg gaaaatcata      2100
     tcgttatttg tgcagtctat ttggatcctc gtattcgtcg agttttgaat aaaaaccctc      2160
     aagacataat cagagcaaga agtcagctga agcaattgta tttacagata catgctgttt      2220
     ataacaaagt aagtaaaaag cttcggctta tacattaatt aataatttgg tatgacttaa      2280
     tatatgtttt aatttgattt gtttagagcg attctcgtca aaatatacct gaagatgaac      2340
     caacatcatg ttctaatcaa tcgaattctc tcctcaaaga gtttcttaac tcttttgaag      2400
     atattcagag tgtagagaac tccgacgctt atgatgagga cattaaaaaa gcctacagcg      2460
     aaatcgacaa tttttgcccc aagcctatcg atgtaaatac ggatgttatg agttattggg      2520
     aggagaaaaa attcgtatat ccatacctct accaaatggc aaaagtggtc catgccgtgc      2580
     cagctaccca agtgagcgtt gagaggtcct tttctgctct caagttaatt ctaacggacc      2640
     ttagatccaa gctatcatca gaatccataa aacaactttt atttgtgaag ctaaataaaa      2700
     agtttaaata aattccagct taaaccttac accactggca tttttaaaca ttgtatatat      2760
     atgcgttttt taggataaaa ctcataatag ttacgattac tgtttgcagt cttatgttat      2820
     aatttttcgt gacaaatgct gcaaaatata gacaaagctt tataatctga aaaaaggttt      2880
     taccctcagc tggaagttaa cctctgttgt tgtggagctg atacttatca ctgagccagt      2940
     atatacaatg gattttctta ccaaatgtac tcacttatgt acagtggttc ggatatgtag      3000
     tgcagtggcg gatctaggat tttgttgtag ggtgtgatac caaaacaatt ttccttttat      3060
     ttttcactcg agtggggggt gttctataac ccatatcaca ttccgtggat ccgcgcataa      3120
     tgaattaaaa cttggatttc tcctttgcgc gacgtaaatt aattaattaa tcatacttat      3180
     ggtggttatt ttcagttggt aaaaatcttt aaataaaccc aatagatcaa ataccatacc      3240
     ttatttttta aaacattttt atcgcctaca cagccgccac taaacgattt tgagttttat      3300
     ttttgatcga aaaaataaaa ctcagagaat aagttttatt ttttgatttt tatataaaac      3360
     tcaaggaata actgttattt tccaagcgga aaataaaact cagagaataa gttttatttg      3420
     tcaagtttta tataaaactc acagagtaac aattattctt tgagttttac ttaaaactca      3480
     tgacataatg attaaaaagc gatttttaaa ataaaactca taacagttac gatccctg        3538
//
ID   hAT-13_LMi  repbase;    DNA;    INV; 7385 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7385
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3039-3039 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(4348..5274,5103..5990,5951..6553)
FT                 /product="hAT-13_LMi_1p"
FT                 /translation="MAGNNYRLHSNDVGHARSSERIKEAEECPKNADNRRF
FT                 SPVHYSYSLKNLEKADRHWLVYSKSKDAVFCFCCKLFSSSTVKIAKNGITD
FT                 WRHLASYLESHGKSTDHLNSHKKWIVFSEGMKKSRTVDAHHQRLLNTESEH
FT                 WKNVLGRLIAIIHFLGRQCLPLRGSTDTLFEPDNGNFLKLVELFGKFDTVM
FT                 MEHLHRTKQGENKGHHYLGKETQNEIIHLIGSSITNNILLMMKSAKYYSII
FT                 LDCTPDISKVEQMTVVVRFVQEARLDGVYDVRIREHFLGFLPVPDSSSSTL
FT                 TQVVLKFLEEKTSYCVIADDSCGTFRPGGKTRRGIRCPNSGAFPGISSSAR
FT                 FFKLHFDAGRTQVLGRKNILLCNMRGQGYDNGANMKGKKSGLQKRISDINK
FT                 RAFYVPCSSHSLNLVVNDAAMSSKYAVSMFSTVKSLYDFFSSSVRRWDVLK
FT                 KYLPNLTLKSLSDTRWESRIDALTPLRFQIGGVYDALVQISEEFDGMTAHE
FT                 ATSLANQIKNYTFLTSLVIWYDVLLHISVVSKTLQTIDINVSEAVEMLEKT
FT                 KAYFETCRTEEKFVSFLTDSKELATELELEDLTLPRISVSRRRSKKPIHFI
FT                 MKEGMRQEANTLYYEGRDETIDDPTKRYKIEFYYYLLDIVTTSLDERFNQL
FT                 KSHCDYFDFLYDIGELKNAPPDSLDTKCRNLAAILQDHESSDIDALELREE
FT                 LKVLSTLLKPGIGPKETLKFIGRHNFCPNVNVALRILLTLPVTVASGERSF
FT                 SKLKLIKTYLRSTMSQTRLNDLATISIEHELAEELNYTDRVKEFAQAKARK
FT                 VRFV"
XX
SQ   Sequence 7385 BP; 2204 A; 1455 C; 1568 G; 2156 T; 2 other;
     cagggccggc gcaaggcacg tgcgaaacgt gcggccgcac ggggcggcac tttccggggg        60
     gcggcaaatc tgccgccccc tctccttttt ttctgtagta caaactcaac attcattccc       120
     aagaggggat tcgaaaccaa acctcggagg gagcggcttc gggaactgtg gcatggcgcc       180
     tcgactacct gccggccgcc cctgttgaac aaggggaggg aggaggactg atttcttcct       240
     cgccactgtg gcagcgccgt cgtgtttacg ccggaggaag agggggaagc agtctggcgc       300
     acacgccagt attcttatga gtggagcgct gccagcctgt tacgcgccgt gcgtttactc       360
     acaactaatt ttgcaggaga cgaaatctaa tttggaaatt cgaatgcaat gttcgatact       420
     gcggttacat gttaagcctg aagcaatttt gctaagccct tcaatggcag ttcgagtgtt       480
     ttattcttcc cgcgctatgg aaaaaaattg ttgaacatta ctacagtcaa acatgtccaa       540
     cacctacaat ggctagaagt attccgaatg ggtaaatacg ctgtgagtaa ttacaaggga       600
     taaagacatt gatagtaagc ctggcataag ttgggtttcg acgtattttt gaaaatgttt       660
     gctatccgtt tctgagtgat agtcggacgt tttggttttt gagccctgaa acacctgtct       720
     ccgcctgcat gaacaacaat caaactctga ccagcacttt tgtgtgacaa tactactcac       780
     acactatcac tttgccaaca tttatttact gtataatgcg tgtgaatcca tgtttcgtct       840
     aagtaaacta ctggtcgctt tgattctgat gaaaacctga gaaagtatgg tcttttagca       900
     acaatgccct ctcgtccgag cgaaacaaaa cgttaatttt gacaccttgt aaaacgaaaa       960
     tccatagaca gaacattgct tctaagggtt tccttgctag ctttgaagct catttctgtt      1020
     tgacaaaagt tgtgcagttt tcgcaaagtt cgtatttctt tctattgttc gtaatgccat      1080
     aaaaattgct gcctgataat acatttatcc atatcatcgg tcacatactt attgtgagct      1140
     tcttgcttct tcttcttggg cgctagttta accgtagcct cgctgtacct cgtcacgtga      1200
     cctagttcct ggcactgccg cgtcaccact tcgcctttcc agacaatagg tattgttgcg      1260
     ttctctacaa cgaaaactac agaattcgtt tcggtagttg gccgagagag tcaagattgg      1320
     tcagaagcac tttcattgcg tttcgcaaga acagaagaat tggtgcgtcc gaatttcttg      1380
     caacttggga tgtaataggt aagtgctttt catataacgt acaattagta ttgcgcatgc      1440
     acgttactca taagttagaa tttttctcct tcaagaatgc agaataggaa aatttatttt      1500
     tcttatgatc tgttacttaa aaaattggca actcggcaaa taagcacgcg tcaccccaat      1560
     agctagaatg aaaataaagc gcagaaaagt gacgtgatac ggcgatgact aatttgttac      1620
     cccttattcc ataatcagac acgacagaac tgacacatgc aaattacgac agatggcgag      1680
     tgtcagttct ttgaaatgaa caaccgcagt gcagtgagtt aatatatttc gactagcatc      1740
     agtacccgtc gatkcccggg tgtgtattta ttgcattatt atgttactcc atctccttat      1800
     tcttcctctc tccattgtct tccgccccac tctttggccg tttcacctgc gtctgtagtg      1860
     aaattcgacc tgaaattcaa tttcacgcgg ctcagttcta atgacttcat ctcctgaaca      1920
     gtgtatccta cagtaatata attttccgtt tacgtgcagt ggaatattag aaaattttct      1980
     gcgaagtgtg ttggaaaaaa agttagtagt aaagatgaaa taaattaaaa tctgatgcgt      2040
     gatggtgagg tttttcatac aacgcattgt ttatgacgtc atatatcctg aacttttttt      2100
     tttactacga tataattttg atggtacatt cggtgttata tgttcataca gtctgcaaaa      2160
     tgtgacacga ataggttttg tagtgaagac gtcttaatta aaacctcttc catggtgggg      2220
     tggtttccga agaacctagt tgcctatggc ttcatatctc cttaactacc atgatataat      2280
     tttggagcta aattcagtga tatatgtgga taatgttagc aaattataaa caagtaataa      2340
     attaaaaagt cacgcctgat gctgtagttc cactgaacgc taatgtaagc agatggtaat      2400
     tttcgacgcc tgtaagtgtc tatcatgacg tatctcttga actaagagcc gtacaatggt      2460
     ataatttcgt atgttcattg tgtcctatat gtagatacta cctgcaaagt gtgttgcaaa      2520
     cagaattaat agttaaaaag taataaatta aaacgtcgta gcacttgcgt aagtttaatc      2580
     gaattaatag ctaaaatgtg gtaagagaaa aacatttttc ctttaatcat tttgtggggg      2640
     atgtcggcga gaataagttg tgtaaaggtt tgaaactgca tgcgatgttt tttggacgta      2700
     gcttttatca ttttctagtg atggatgcac aaatttgaat atttgagtgc aaaatgttca      2760
     aatgtttgtt aagcttatgg gacttaactg cggggttatc agtccctaaa cttacaaact      2820
     acttatgaac taacttatac taaagacaac acaaacatcc atgcccgagg gaggattcga      2880
     cctccgccag ggaacggcct cgcgcatcgg agcatagcgc ctcaatgcgc tcggccacts      2940
     cggcgcgcta tttgagtgcc gtcggcttca agacaaactc acagtttcta tgtagtcttg      3000
     tcttaccgtt ttcagcttta cataaaatta cacctcttaa tgagtagaat atgacagcat      3060
     ttattttttt cgaaatcggt cgataactat gcgaagtact gaaaatcaaa cttttcttcg      3120
     tcttggaagc tgttagtagc acacacacat ccattttaca gtatatacag atttactttc      3180
     tattccgttc ttgattacgt aattgtgaag caaaaagtta tgaaacccgc taactgctcg      3240
     taaactaatg gaccgattta acgaattttg tacacatttt tgccttcagg acacaattcc      3300
     tatgagggta aaaccaccta caatacatat ttattttatt tatttattta acatgcccca      3360
     ttacatagta atattacacg taatactaca atacatatgt caggagacgt gaagtaataa      3420
     acagtaagcg tcacaaaaaa tgcccatcat gctgcggtga taagaattta ttcatccact      3480
     actgcgaatg aaaacactta gccaaacttt atctcattga caatcccaac aaaattatga      3540
     aagggaaagt ttatagctta ctacttttcc gctgttcgtg agcacgaaag tgcaaatcgt      3600
     aagactataa cttgttagaa gttaatatat ttttcagcat tcgtctgtgc gtgttttttc      3660
     tgcaacaaaa aaacaggttg aagtcaacgg aactaactag tagttagagt agaattttaa      3720
     atttaagttt ttgtacggta ttaaaaagcc tccttgccac tttcctttag tttttttaag      3780
     aaattggcaa atcagggacg atgaaagcca aatgaacact gacatcaaca gttagtttca      3840
     cgtaatcgtt ctttacaggc tggatcgaaa catgtccgac ggtagaaaaa gactgttggc      3900
     agtgaatata ggaaaagacg ggcgctgaag gaagatgacg ataagaaaca aaaggatgca      3960
     ctacaacgat atttaagcca aagagagaac gacctagcag cggcgagggt ggaaaaatag      4020
     atcctgaaag tacagaaact ggtggagcta ctgcagctac atctttatct tcaggacatg      4080
     accagaaagt tgacgaacac agtactgcga ccaccgcata cagtagcaat gctgacggtg      4140
     ggtcatccac aacatgttca acagacctcg cctggactca agacctgctt tgcgacgata      4200
     gctccgagat tgaaacatca ggcagaactg aaattaggcg acctgattcg gaaaatactg      4260
     gaggaacatc agccgaggta ctcaccaccg gagaagggac tgaaggcgag ctaaactgga      4320
     agagacagtt gactcagatc ccggaagatg gccggaaata attaccgact gcattcgaac      4380
     gacgttggtc atgcgaggtc ctccgagcgc attaaggaag ctgaagaatg tcctaaaaac      4440
     gcggacaacc ggcgtttcag ccctgtgcac tacagctatt ctttgaagaa tttagaaaaa      4500
     gcagatagac attggttggt gtactcaaag agcaaggatg ctgtgttctg cttttgttgc      4560
     aaactttttt cgtcatctac agtaaaaatt gcaaagaacg gtataaccga ctggcggcac      4620
     cttgcttcgt atctcgaaag tcacgggaag tctaccgatc atttgaattc acataaaaag      4680
     tggatcgtgt tttctgaggg gatgaaaaag tcacgaactg tcgacgccca tcatcaaagg      4740
     cttctgaata ctgaaagcga acattggaaa aatgttcttg ggcgcttaat agcaataatt      4800
     catttcctgg gtcggcaatg tctgcctttg agaggaagta cagatacact ctttgagcct      4860
     gacaacggaa acttcttgaa actcgttgaa ttatttggaa agttcgacac tgtgatgatg      4920
     gagcacctgc acagaacaaa gcaaggtgag aacaagggtc atcattatct tggaaaggaa      4980
     acacagaatg aaataattca tcttattgga tcatctataa ccaacaacat tctattaatg      5040
     atgaaatctg caaagtatta cagtataatt ctggactgca caccagatat ttcaaaagtt      5100
     gagcagatga cagttgtggt acgtttcgtc caggaggcaa gactcgacgg ggtatacgat      5160
     gtccgaattc gggagcattt cctgggattt cttccagtgc ccgattcttc aagctccact      5220
     ttgacgcagg tcgtactcaa gttcttggaa gaaaaaacat cctattgtgt aatatgagag      5280
     gccaaggata cgacaatgga gcaaacatga aaggaaagaa gtctggtctc cagaaaagaa      5340
     tttcagatat taacaagaga gcattttatg taccatgtag cagtcactca ttgaatcttg      5400
     ttgtcaacga tgccgctatg tcttctaaat atgctgtttc catgttttcg acagtgaaga      5460
     gcttgtatga tttcttctcg tcctccgttc gacgttggga tgtcttgaag aagtacctgc      5520
     ctaacctgac gctgaagtca ctgagcgata ctaggtggga aagtcgcatc gatgcactta      5580
     ctcccctgag gtttcaaatt ggaggcgttt atgatgcact ggttcaaata tcagaagaat      5640
     tcgatggcat gaccgctcac gaagcaacgt cacttgcgaa tcaaataaaa aattacacct      5700
     ttctcacttc tctggtaatc tggtacgacg ttctgcttca catcagtgta gtcagtaaga      5760
     ccctccagac cattgacata aatgtttctg aggccgtgga aatgcttgaa aaaacgaaag      5820
     catattttga gacctgcaga acagaagaaa agtttgtatc tttcttgacg gattccaaag      5880
     aattggctac agaattagag ttagaagatc taacgttacc acggattagt gtttcccggc      5940
     gacgaagtaa gaagccaata cactttatta tgaaggaagg gatgagacaa tagatgaccc      6000
     aacaaaacgt tacaagattg aattctacta ttatctttta gatatagtaa ccacatcttt      6060
     ggatgagaga ttcaatcaac tgaaatctca ttgtgattat tttgattttc tctacgacat      6120
     cggcgagctg aagaatgcac ctcctgacag cctggacaca aagtgtagaa acctcgcagc      6180
     gattttgcaa gatcatgagt caagcgacat tgatgcacta gagttgaggg aagaactaaa      6240
     agtgctttca acattgttga aacctggaat aggtccaaaa gagactctga agtttatagg      6300
     aagacataat ttttgcccta atgtcaacgt tgctctgaga attctcctaa cactcccagt      6360
     gacagttgcg agtggagaga ggagtttctc aaaactgaaa ttgataaaga catacctccg      6420
     atcaacgatg agccaaactc gtttgaatga tcttgcaaca atttcgattg agcacgagct      6480
     tgcagaggag ttaaattaca cagatcgtgt gaaagagttt gcacaagcaa aagccaggaa      6540
     ggttcgattt gtctagtatg tttttaaatt tttatattat gttcagcgtc ttggttattt      6600
     actgtgttgc ttcttatttt gttcaacatt aaatagttat tgtaaatatt attgttcaaa      6660
     ccaaattatc gttaaattgt aaatatattt tgttttccgt taaatacatt atctgttcac      6720
     aaccattgaa aaatgtttat ttacgttaac tgtaagttca tgccgcgcgg gattagccga      6780
     gcggtctaag gcgctgcagt catggactgt gcggctggtc ccggcggagg ttcgagtcct      6840
     ccctcgggca tgggtgtgtg tttttgtcct tatgataatt taggttgagt agtgtgtaag      6900
     cctagggact gatgacctta gcagttaagt cccataagat ttcacacaca tttgaacatt      6960
     tttgttaatt cacaaggctt attaaaatta gctagatttc ttcagccagg tttgattcca      7020
     tttttgagct ggtgcccagc gactgcttgt acaaatctgt agagaatgtc accaatcact      7080
     cgcaattttt gtttttattt tccagatcta tatagatttc gggcacagtg tggctattct      7140
     caatgctttg agttatgttt acatctatac cgtcatgctg aacgtagctg tcaacatgac      7200
     ggtttagatg taagcacata ttaaaagctt tgagactggc ctaggaagat ctgaaaagaa      7260
     aaaaaatgcg attgattgct gagatttcct acagatttgt ttaaataaaa ttccacaaac      7320
     gttttgttaa aaaaaaaaaa aacggggggg ggcacggggc ggcacttggg cttgcgccgg      7380
     ccctg                                                                  7385
//
ID   hAT-14_DTa  repbase;    DNA;    INV; 2710 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2710
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6237-6237 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(391..1039,1089..2236)
FT                 /product="hAT-14_DTa_1p"
FT                 /translation="MANIKCKIISGEYTVTNKRGSSKVWNTFGKIDDHNGQ
FT                 ELKSVVCCRTCKNVYRFKKSTSNLVKHKCYIIDNTKRTAGPEEVEVDLATK
FT                 HYGVKIITEWTLKNGRSFNIIDDSGLKKLAQFLIKVGATFGENVNINKLLP
FT                 HPTTISRNISKIYFDYFTEIKNEILKNKTHGYSITTDIWTDDHLKTSYLSL
FT                 TINFIKEGSLVNRLLAIKSMKGESCTGIRIKRKISKILNEFQCDLELDEPI
FT                 IVTDRGSNMISAFRGLPHIFCINHLLHNIIEKTIKEVPELEELVKRCSKLV
FT                 KYFKKSGMNSSLDISLKSFCPTRWNTVYYLIKSIETNWIQILNILNDKNQM
FT                 EKVAEISLSNLRELIKLLSHFEMASKKLEATKEPTLHLVILHINHLRKICS
FT                 LDTDDPEIIQNTKFKLLNLIQNVVLQNLTKFHRMALFLNPQTNKLSQFSEE
FT                 EKEETIGDIKTIMNLYASDSLENHIPSPDHEIDAIFSDYFSTNEDRNILEK
FT                 INNEIYLYGNVRVGFNSTFDILQWWATSKDQFPLLFKTSCKIFAASASSAA
FT                 SERAFSIAKNLISDKRCKIGTNEDMVNQIMFLNYNIDTININVDTDTDNKD
FT                 E"
XX
SQ   Sequence 2710 BP; 1048 A; 438 C; 447 G; 777 T; 0 other;
     tagactcctg catgaatcta ttcaaattga attatacata ctgtacagta ttaactgtac        60
     tcaacattta ctgtaaagtc tactaagtgt gtagtgcaca gtgtcaggca aactgaaatg       120
     agtacacctt ttttgagtac accttaaaaa tgaatgctac gatcattcat cgattttcat       180
     gctgtacacc tcataaaaaa ggtgttcagt aaaaattcca tatgaacagt agtgtgctta       240
     ctgtcatgta caacaataat attgaaactg tatgaaaata atttcgtaag catggaaatg       300
     gaaaccgtaa gaatatttat caaattttgt aagattgatg gttaattttt gtatttgtgg       360
     tacatttagc tggaattgtc taagaccgag atggcaaata taaaatgtaa aataattagt       420
     ggagaataca ccgtgaccaa taaacgagga agcagcaagg tatggaacac ctttgggaaa       480
     attgatgacc ataacggaca agagttaaaa agtgttgtgt gctgcagaac ttgcaaaaat       540
     gtttatcgat ttaaaaaaag tacttcaaac cttgtaaaac ataagtgcta cataatagat       600
     aatacaaaga ggacagctgg gccagaagaa gtggaagtgg atttggcaac aaaacattac       660
     ggagtaaaaa ttataacgga atggacttta aaaaacggac gatcttttaa tataattgac       720
     gactcaggac taaaaaagtt agcgcagttt ctcattaaag tcggtgccac ctttggggaa       780
     aatgtaaata ttaataagtt attgccccat ccaaccacta tctcaagaaa catatcgaaa       840
     atttatttcg actacttcac ggagataaaa aatgaaattc taaaaaataa aactcacggc       900
     tatagcataa cgacagatat ttggactgac gaccatttaa aaacgtccta tttatcgctt       960
     accattaatt ttatcaaaga agggagttta gttaatcgat tattggcaat aaaatcaatg      1020
     aagggtgaat cttgtaccgg taagtaaaaa cacagcaaca aatttgcttt aacaaagaat      1080
     atccataggc ataagaataa aacgaaaaat ttccaaaatt ttgaacgaat ttcaatgtga      1140
     cctggaacta gacgaaccta tcatagttac agatcgaggt tctaacatga tatcggcatt      1200
     tcgtggacta ccacatatat tttgcatcaa ccatttgttg cataatataa ttgaaaaaac      1260
     aataaaggaa gttccagaac tagaagaatt ggttaaacga tgcagtaagc tcgtaaaata      1320
     ctttaaaaaa tctggaatga attcaagctt ggacatttcc cttaaaagtt tttgcccaac      1380
     acggtggaac accgtatatt acctgattaa gtcgatagaa acaaactgga ttcaaattct      1440
     aaatatttta aatgacaaaa accaaatgga aaaggtagcg gaaataagtt tgagcaactt      1500
     aagggaactt ataaaattac tgtctcattt tgaaatggca tccaaaaaat tagaagctac      1560
     gaaggaacca acattgcatt tggttattct acatatcaat catttacgaa aaatttgcag      1620
     tttagacaca gatgatccgg aaattattca aaataccaaa tttaagttac ttaatcttat      1680
     tcaaaatgta gttctccaaa atttaacaaa gtttcataga atggctttat ttctaaaccc      1740
     gcaaaccaac aaattgtccc agttttccga agaggaaaaa gaggaaacaa ttggcgacat      1800
     aaaaaccatt atgaatttgt atgcttctga ttctttggaa aaccatatcc cttcacccga      1860
     ccatgagatc gatgccatat tttcggacta tttctcaacc aacgaggacc gcaatatttt      1920
     ggaaaaaatt aataatgaaa tatacttata cggaaatgta cgcgttggat tcaactccac      1980
     atttgacatc cttcaatggt gggccacttc aaaggatcag ttcccactgc tttttaaaac      2040
     aagctgcaaa atctttgcgg cttctgcaag cagtgcagcg tcggaaagag cgttttccat      2100
     tgcaaaaaat ttaatttcgg acaaacgttg caaaattggt actaatgaag acatggttaa      2160
     tcaaattatg ttcttaaact acaatattga cacaataaac ataaatgtag acaccgacac      2220
     agacaataaa gatgaatgaa aaataaatta atcaattaac caatttcaag caccatggcc      2280
     aatactaatt tttaaattgt catatcttta tcaattataa tcgaaaaatg gaacaccgaa      2340
     tttatcagct tatatgtgaa aacatggttg tcccatatgg tctattgttt ctgataaaag      2400
     tgtggcttag aggtaaagaa agttaaagaa ttcaggattg tagaataaaa atcaatttat      2460
     aactttttga atccaaatta tcaaaaaaaa attttaatat cattcagtgt acacttggaa      2520
     tactgtacag caataatact gtactcacaa aaaggtgtac agtaaaattg tgagtgagta      2580
     caccattcac acaaatataa aaatcatagc attctacaac attcacaaaa aaggtgtaca      2640
     acaaaacatg tacacctttt tggggaaaat gattcaaaag gccttatgaa tgtattcatg      2700
     caggagtcta                                                             2710
//
ID   hAT-14_LMi  repbase;    DNA;    INV; 3019 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3019
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3040-3040 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1149..1481,1324..1986,1895..2455)
FT                 /product="hAT-14_LMi_1p"
FT                 /translation="MASDMEQQLIERAANFISFFIALDESTDVSDISQLVI
FT                 FIRGVNDNLRVTEEFLDLVPLKDNHRFGYFSSRGKRVRVNAFKMGTPDQCN
FT                 NRWSPCTTRTTHWIPELRQGKNGKTTTGLDIFLAVENVFESMRLKWERLTS
FT                 VTTDGAPALRGLRTGFLSYVRAKMAEVGCSLFTAVHCLIHQEALCAKIVNV
FT                 KQVMDTVVRTVNYLPSHGLKHRQFKEFLADIEAEYPDIPYHTEVRWLSKGK
FT                 VLNRFFCLRDEINTFLEMKRRRELLHPKWVANLAFLSDVTGHLNTLNTTLQ
FT                 GENHTVVDLVQTIQAFKKNYFVEKTVARAELWTLPCIKQRCRRFKHSKKII
FT                 LWKKQLREQNCGHFPALNSVKDVDFSDYVQIICELQEEFENRFLEISELQP
FT                 AIDIFVRPLSLRAEDISQVFQLELIDLQCDIRLTDRFLMCKALEDFYSSFP
FT                 REKYPLLHKHAAKVLSMFGSIYICERFFSHLKLAKTKNRSLLSDKNLTNSL
FT                 RLAVSRNIVPKMDKIISSRKKNL"
XX
SQ   Sequence 3019 BP; 902 A; 599 C; 646 G; 872 T; 0 other;
     caggctcgtc caaactgtgc ccctggggcg ctagcgcccg cggtcagcgc cccgggcgcc        60
     tcggcctgct gcttcgtgtg gaaggcagta gtcaacaggc gtgaggctac agtcggtaga       120
     gatggacggc caacagcagc aggcaaaaaa aggagcggcg cgtctgcgct gtttaaaccc       180
     gagtgggaaa ttgatttctt ttgtactgct ttcgaaaatc gtgccaaatg tttaatggaa       240
     cctcatgtat ttaaaaaaaa gtattcgatt gaacggcact ttaatacctg tcacaaagat       300
     cagttcgaaa atttgtcgca agaggaacgc cagtcaaagc ttgaagaact gaaagaaaat       360
     ttcaggcagc attacagtga attaagtgta tcctatcgta tcactcatta tttctaaaga       420
     tgataaataa aactatattt tacaatctga tatgtcgctt agcaatgtgc tagttataga       480
     atatcagatt ctcagcgaca aggaacattt cctttcggtt aatttttata ttctggttgt       540
     attaaatcgc gtcacacaga cacaagaaaa tgtttcaggt gcgtcatttt gtaccacttt       600
     ctgaaaagcc gtcacaaatg ctgtctcaga cagcaaagtg tcattaagag tcattctttg       660
     tttttgtgta ttcgtgtttt gacggttggg aaaaagttgt agtttgatcc aagttttcaa       720
     ttaaaacgca aatatcagag ataaaaattt attttgcgat ctcatttcgc tgtccttgct       780
     agcgtccatg atcgcttttc agaagaactg aaggaaaacg caactaaaac caacctttgt       840
     tagtttttat ttgggtttca atgaatgaaa caatttttaa aatgataaga gttttaaaaa       900
     caggaattta aacaattaat tgtacctttt tctgccattg taggaacagg aaacaggtgc       960
     ccaaagtttg cgcgccagtt acaaatgctc gatgagaatt gcgaaagcag ggaaaccctt      1020
     tgcggctggg agtctcatca aggattgctt ggtcgactcg gcagcttgaa tttgtccagc      1080
     aaacctcaca gaaaaatttg aaaaaaatag ctctttcacc ttaatctgtt gctcgccgag      1140
     tcgaagatat ggcctcagat atggagcagc aattaataga gagagcggca aacttcattt      1200
     cattttttat cgctcttgac gagtccacgg acgtttcgga catatctcag cttgtcatat      1260
     tcattcgggg tgtcaacgac aatctgcgtg tcaccgaaga atttctcgat ctcgtaccat      1320
     taaaagacaa ccacaggttt ggatattttt ctagccgtgg aaaacgtgtt cgagtcaatg      1380
     cgtttaaaat gggaacgcct gaccagtgta acaaccgatg gagcccctgc actacgagga      1440
     ctacgcactg gattcctgag ttacgtcagg gcaaaaatgg ctgaagtcgg ctgttcctta      1500
     ttcacggcag ttcattgtct tatacaccag gaggcgcttt gtgcgaagat tgtcaatgta      1560
     aaacaagtta tggacacagt tgttcgaaca gttaattatc ttccatcgca tggactcaaa      1620
     catcgccaat ttaaagaatt cctggctgat atcgaagcgg aatacccgga catcccctac      1680
     cacacagaag taagatggct gagcaaaggg aaagtgctta atcggttttt ctgcttgagg      1740
     gacgaaatta atacattttt ggaaatgaaa cgacgtcgag aattgcttca tcctaagtgg      1800
     gtggcgaatt tggctttttt gagtgacgta actggtcatt taaatacttt gaacactaca      1860
     ctccaaggcg aaaatcacac tgttgttgat ttagtgcaga cgattcaagc attcaaaaaa      1920
     aattattttg tggaaaaaac agttgcgcga gcagaattgt ggacacttcc ctgcattaaa      1980
     cagcgttaaa gatgtggatt tttcagatta tgtacaaatc atttgtgaat tacaagaaga      2040
     gtttgaaaac agatttttgg agataagtga gcttcaaccg gccatagata tatttgttcg      2100
     cccgctttcc cttagggcag aggacatctc acaagtgttt caactagagc tgattgatct      2160
     gcagtgcgat atacgcctga cggaccgctt tcttatgtgt aaagctttgg aagactttta      2220
     tagcagtttt ccacgagaga agtatcctct tttgcacaag cacgcggcca aagttctatc      2280
     aatgtttggt tccatctata tttgtgagcg ctttttctct catttaaagc ttgctaaaac      2340
     taagaaccgt tcactactta gtgataaaaa tttgactaat tctttgaggt tagcagtctc      2400
     ccggaatatt gtaccaaaaa tggacaaaat catttcctca agaaagaaaa acttgtaaaa      2460
     tgttaattgt attctttaac aatatcgaat gtaagaatta aaagtcttta taaccttaat      2520
     tctattttta ttgtaatttt gcaaacttac acgaagtaaa acaaaaaaaa aaaattactt      2580
     gtaactagta agaatgagac tatatcccta acgtaaaatt attgctaaaa tggaatgttt      2640
     atgacagagt tcatttaaaa aattgatata tccttcagaa gacgcctact gtacatatgg      2700
     cgagtgtgtg tgtgcagtac taagagaaga aacctgtggg tcagaaaaca acaagttgtt      2760
     ccttgattct tttttatata aatttgccta gtaattctgc catgcgaaca ctaattgtta      2820
     ccgaaacagt aaatggttcg ttggactgac cgcgggacag tccagcgcag agcagtgctg      2880
     tgcggcctct ttccgcactt ctctctcgct ccgttgccga cactagcgac acacggtcgc      2940
     ggccggggcg ctgaactaaa ctgccctgcg cccgcggggc gcggccgcgc ccgccgggcg      3000
     aaattcttgg ttgagcctg                                                   3019
//
ID   hAT-15_DTa  repbase;    DNA;    INV; 3857 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3857
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (12-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A relative complete intact copy, 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(661..1646,1862..2147,2213..2515,2641..2649)
FT                 /product="hAT-15_DTa_1p"
FT                 /translation="MIHMILILLKSNNPLYSQIIEKARWVENRMEFPEVFF
FT                 TTDAEKKVSICKICNATFSGNYVSNLKRHLESRHPSEYGLEISEDSHGCPQ
FT                 KKIKFSSSLSKGEVKDACVELVTTEKLPFSVLDSNGFRVLTGHIFKGLDMP
FT                 VANSRNIMTLVEDKYENLKLKIISSLQKKIISLKMDTATRCGRGILGLNVQ
FT                 FYHDRKLCIRTLSFIELDKAHTSQNLCSEINLVLSEFGIESNQLYSVTTDN
FT                 GRNMIKAVHLMNDDCTDYDNDCDYASDLTNQDDDELLTDIDIKSIKSIKCA
FT                 AHTLQLAVKDFYQMLGSMDGIDKARKLVKHLRTPTFSATLKLQSAQLFMGD
FT                 FYKAWLELKLLVKASKSSHSAQLLQCIEKREQSLMDNYVVVSSIYLDPRIR
FT                 RVLIKRPSSIMLAKVALKKLMGKILSINRSVSEAILTEQPTTSCHAANNVQ
FT                 DPPESCMLTEYLNSIENENGTDEYDDIDTNLKSAFREIEECNPRPVPIDVQ
FT                 IMEYWEQKKFQLPNLYQLAKVVHAVPATQEFL"
XX
SQ   Sequence 3857 BP; 1306 A; 603 C; 685 G; 1263 T; 0 other;
     cagggaccgt aacagttata agttttattg ataaaactcg cactgaaaaa cttatttctg        60
     atttttattt gtattcctca aaaataacag ttattgtttg agttttatta taaaactcat       120
     gatcatgatg agtaaaaaaa aataaaaatc atcaataacg atcatgtttg agttttattt       180
     tataaaactc aaaataaaac tcaattcgct tttgcggcca ttgtattggg aatttaaata       240
     tggtttaaat tggttcttgt tcgtttggcc atgtcgtttt agcacattta ataaaaaaaa       300
     atttattttt acattaaact attttaaaaa ttgatttaag gtgaaaaatg ggcctttttg       360
     tacgactttt ttgtgaaggc aggataaata ttggttttta tggatctgat aactttcgat       420
     cttttgcaag atcttttaag tttttcgtaa tacaaagtaa agccggaaga attcacgaat       480
     tgtatttgat ccgttctttc ataaaattat gacgggaaaa tatcatggtc ctaattgaga       540
     atgcagcaat atttcagtta tgtgactgtt ttcactattc gcgattcatt tgacctaatg       600
     aattcgtttt ttttttttac cttaagaatt cgcggattct cttaacttga agaattcgat       660
     atgattcata tgattctgat attgttaaag tcgaataatc cgctttacag tcaaataata       720
     gaaaaggcga gatgggtcga aaatcggatg gaattccccg aagttttttt taccactgat       780
     gctgagaaaa aggtatcaat atgtaaaata tgtaacgcga cgttttcggg taattatgtt       840
     agcaatttaa aacgccattt ggaaagtcgt catccaagtg agtatggctt ggaaatttct       900
     gaagatagcc acggatgccc gcaaaagaag attaagtttt cttcctcgtt gagcaagggc       960
     gaagttaaag atgcgtgtgt ggagctagtg acgactgaaa agttgccatt ctcggtattg      1020
     gactcaaacg gttttagagt cttaacgggg cacatattta aaggactgga tatgcccgtt      1080
     gcaaattctc gaaacataat gactttggtg gaggacaaat atgagaacct caaattaaaa      1140
     attatttcat cgctccaaaa aaaaataata agtttaaaga tggatacagc gactaggtgc      1200
     ggccgtggaa tattggggtt aaatgttcaa ttttaccatg acagaaaact gtgcatacgg      1260
     actctgagct ttattgagct agataaggct catacctcgc aaaatttgtg ctcagaaata      1320
     aacttagtat tgtccgaatt tggtatagaa agcaaccaat tatattccgt taccaccgac      1380
     aacggtcgaa acatgataaa agctgttcat ttaatgaatg acgactgtac agattatgat      1440
     aacgactgcg attatgcttc tgacttgacg aaccaggatg atgatgagct tctgacagac      1500
     attgatatca agtctattaa atcaatcaaa tgcgcagcgc acaccttgca gctagccgta      1560
     aaggatttct atcaaatgtt aggttcaatg gatggtattg acaaagctcg aaagcttgtc      1620
     aagcacctta gaactcctac gtttaggtaa gtttttggcc tttttttttg cgaaattaat      1680
     attattccca ttaagatatt tgataaaaac aaattcccta ccgcaacctg agcttgatgc      1740
     taaagaaact tataaagttc aagagctttt gtaaggatgc tgtgaagcct gaaataaatc      1800
     ttcaaaactt tgaatggact gagatagaat gccttgtaag ttcgttggag ccactgtaca      1860
     gtgcaacttt gaaattacaa agtgcccagc tgtttatggg agatttttat aaggcctggc      1920
     tagaactaaa actgttggtg aaagcatcga agtcatccca tagcgcccaa ttgctacaat      1980
     gtattgaaaa acgggagcaa tcgctgatgg ataattacgt cgtcgtgagc agcatttact      2040
     tggatccaag aatcagaaga gttttgatca aaaggccatc tagcatcatg ctagcaaaag      2100
     tcgctctgaa gaaacttatg ggtaaaattt tatcaataaa tcgaagcgta agttaattta      2160
     catgcatatt ctattacagt acttttacta gtttattttt tatttaaaat aggtctctga      2220
     agctatattg actgaacagc caacaacatc ttgtcatgct gcaaacaatg tccaggaccc      2280
     acctgaatct tgcatgctca ctgaatattt aaattcaatc gaaaacgaaa atggaacaga      2340
     tgaatatgac gatatagata ccaatttaaa atccgcgttc cgtgaaattg aggaatgcaa      2400
     ccctaggcca gtaccaatag atgtacaaat tatggagtat tgggagcaga aaaaattcca      2460
     gttaccaaat ctttaccagt tggctaaggt ggtacacgcc gtgcccgcca cgcaagtgag      2520
     cgtggaaaga agcttttcgg ccctcaaaat ggtgttaact gatcttcgct gcaatttatc      2580
     gccaatagct ttaaaaaaac ttttatttgt aaaactaaac aatatataaa atttttacag      2640
     gaatttcttt aaagaagtgc tattattaat aaatttttat ggattattgc gacctgattt      2700
     tttttatttc tatttttctc ttgatggggg cttcagtatt gataaaaccg gaactatggg      2760
     gtacatgtca atgatgtgca ctaatgcatt ctgtatatgt cacatataag cattcctata      2820
     ggataaatta acaacagaag actggtccaa aaaaaatcat aaatagtcat aaaaataatc      2880
     aaagtatagt ttgtagttta gctcaggatc gaactaatta gaaactaata tggcggcaaa      2940
     atcatgtgga aatatgtttt attcaagttt aaaggttttt ggcttggtgg actttttggt      3000
     ggaagtgccc atttttacca tgaaatgatt ggattggaat tttattcact ttctataaaa      3060
     atttgcaata tttcccgctt agaccaacgt ttgttttggc ggattgaaat ttatttggtt      3120
     tattttcttc agtcaaatgt ttcgcgaatt tttaaggtaa aaaaaaatgc gaattcatta      3180
     ggtcaaatga atcgcgaata gtgaaaacag tcacataact gaaatattgc tgcattctca      3240
     attaggacca tgatattttc ccgtcataat tttatgaaag aacggatcaa atacaattcg      3300
     tgaattcttc cggctttact ttgtattgcg aaaaacttaa aagatcttgc aaaagatcga      3360
     aagttatcag atccataaaa accaatattt atcctgcctt cacaaaaaag tcgtacaaaa      3420
     aggcccattt ttcaccttaa atcaattttt aaaatagttt aatgtaaaaa taaaattttt      3480
     tttattaaat gtactaaaac gacatggcca aacgaacaag aaccaattta aaccatattt      3540
     aaattcccaa tacaatggcc gcaaaagcga attgagtttt attttgagtt ttataaaata      3600
     aaactcaaaa catgatcgtt attgatgatt tttatttttt ttactcatca tgatcatgag      3660
     ttttataata aaactcaaaa aataattatt accattgatt tttaaaaata aaactcacaa      3720
     aataaaaatc attgcagatt tgcataactt gaccaatttg gaactcattg gtgttcttga      3780
     ttttttggta gcacttttct aagtggatga tttttatagc caggaaaatt tgaaataact      3840
     gttattttcg gtccctg                                                     3857
//
ID   hAT-15_LMi  repbase;    DNA;    INV; 5819 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5819
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3041-3041 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2864..4390,4305..5417)
FT                 /product="hAT-15_LMi_1p"
FT                 /translation="MSKRTYLSGSEKRKKLAIQKETISRLPKLTSFFTVEE
FT                 TNRQSDSSTSSSQDISKSQSLETVPMFNIEDNICVSSSSVPVMKTAAHTSQ
FT                 HASSISSHLDSPDRSMLENISHDPGKYCDEILTEEVRDIWIHKGPEFFQNK
FT                 NSDFSETTTHFADVSGKTKTRKLTRTVFTRKLTNGECVERKWLLYSPSMKS
FT                 VYCYCCRLFNNTVGNNLSSSRGYKDWKHINNLLKEHENSLQHRESMMNYVA
FT                 RSKIVGRVDTGLLSQFNAEVNYWRSILKRIVAVVKFLASRGLGFRGENDIL
FT                 GSENNGNYLGCLELISEFDPFLADHIRKYGNRGKGNTSYLSANICNEFINV
FT                 MGQKVLTTIVNELKAAKYYSISVDSSPDLSHVDQLTFIVRYVKDGQPVERF
FT                 LQFLPMEEHRAQSIEDTVMKFLDSFDISIKDCRGQSYDNAANMAGKYSGLQ
FT                 ARIKEKCEFAIFVPCATHSLNLVGVQAAACVSEAVAYFQFVQKLFTFFCFE
FT                 QSMESFERMFRCKHTSSLSKNCSPFSASNNRWKVLKECLGANKVLKSLSET
FT                 RWSARADALNALHNGYNDIFEALKSISSNTDQPVETRNEAQSLCKKMKKLE
FT                 TILLTEIWDDLLRTINNTNVTLQSSTVTIDVATKLFASISDFISSARSRFD
FT                 QYESSAKEKNPGADYKGNSQRTRICSKHITFSEDSSETVQLSAKEKFRVEV
FT                 FLPIIDTLDSSLKRRSEAYEKVSKHFSFLSQLKQIDSEQLRNRCKEFAEFY
FT                 HADVNADELISECFHLKQYLKNIPNESPELSISSLHSLIKADKIEETFPNV
FT                 KVATRIFLCLMVTNCSGERSFSQLKRIKNELRTTMLQERLTNLSIMCIESD
FT                 VLQQLDFEDIIEDFAFQKSRKKPLTAT"
XX
SQ   Sequence 5819 BP; 1796 A; 1148 C; 1133 G; 1742 T; 0 other;
     cactaccgtc tctaccatag gggcacaagg ggcacaggcc cagggccccc agcctgatgg        60
     gggccccgag aaactcgttc ctttctccta ggcaatgact tttttaagtg aatttttgtc       120
     gcacttattc attataaaga cccagaaatt gtctcgaaac gtgtcatata tggtgtggca       180
     agtgacttgg tttgctgtct gcatgcaaaa tcgtagttat tattgcgggc cttagctaca       240
     gaacacacgg cgacactgtt gtagtagacc ttgtggcagt ctgtttcaga tataacttgg       300
     cggaacattg tatccaatag cggccttcac acgacgagca atcacacagt gctgtacact       360
     agagacgggc aaacccgttc atttttgaaa cctagttcac tgatgatcgt ttcttttttg       420
     gaaccgtcct ttccactcgt tcaccgttcc ttttatccag ttgtcaatgt ctatggtttt       480
     cataacagtc ggaattgcaa ccatgcagca ttggctctgt gctcaccaac tccgttttac       540
     acattttaca aaagttaatt ccctacagtc gatggagcac cggtataaat cgctgttcct       600
     tcataacaat gagcacgctg cttcaccgtg gtaataaata aataaaaaaa tcgacagctc       660
     gatactgagt tggaactgca acgttcgacc gaaaagggaa cggccgcgcg gccaccctgg       720
     agctggaacg ggaacggcca cgcgaccggg accgccgaag tgaacgttcc ttgtaaccag       780
     ttcctcggtc cttccgttca ctcttgtgaa ccgttccttt ggacccgttc gttcgcgaac       840
     gacccatctc tacagtgtac agagcagtgg catttgatgg tagagccagt tattggaact       900
     aggagtcttt ttgtaacggg tgaactcaat attttagagt acagtagttt ccaatattca       960
     aacacgcgaa aatgaacagt tcataaaaaa tgaaagatga tgtctttcca tgcaacgtaa      1020
     ttgaggaagt gcaaaagaaa tcctagtgag caacgcaaag ggtctcataa tctcatactc      1080
     taccgtaact actatccttg ccaatgaaac acacataaga tccaatgctt tgaaaaccgg      1140
     gccaaacggt gagaaaggaa ggatttcaga tgtggaataa tgcctacaga cttgctttcg      1200
     acaaaagcat gcagctaaca aacctatttc gagcgcagta ctgaaagttt cattttagca      1260
     ttaatctcac ttgtacgttt attttagcat ccccctacaa aaacgtataa acgaggtttc      1320
     actgcatatc attgtgattt cctggtcaca ttgaaaatta tgagcattta gccaatatgg      1380
     catttcatct ttccccctat gtattattgc tggtttttca caccgaacgt caacaacaac      1440
     aacggagtct ctcggcaagt tttgtgtcag tttatgttct gggcacctga taaaatcgat      1500
     gtgtaacagt tatatgagtg tacctcaatc aggtagtaaa agataaaaca attgacttga      1560
     aaaatttgca gcattcgtct cttcatggta atcttccctt ttagctccga atttgaaaat      1620
     taaaaattta tttagcacaa gaactactac atttaatgaa atgcaataat ttggtacagg      1680
     aacatttcca tcaattttta ttaacgcatt tataaaatgt ttgtggccat tggaagtaaa      1740
     ttaggttttg ttacctgcgc gtgctctaat tagacgttgt actacactca cagggtgtag      1800
     tatgtgaact gcccaaatat gtgtcattga catatacgat atacctaccc tgttcacagt      1860
     atatttttat tttacttagt caatgcattt actacataca tgtaaacgtt tcacaagcac      1920
     agtaccgttt tttgttgctt tgagcacatc tggtaaataa ctgaagtgtt acttatacta      1980
     agatttcaac gtgtaaacaa tagatgggca ttaaaaaaat gatctgacat acctgaagtc      2040
     taacttgtgg agaaggtact tcacttaaaa gacgtatttt ctcttattcc gggagaagtg      2100
     actttattgt gggacgctgc ttgtcatgtg gaagttgcgt gtcagtctct ccacaaatgt      2160
     aagaactctt ctttttattc cgcttttttc ctggagtaag gaaaaaatca gctaccggca      2220
     cctacttttt ctcccacttt ctttactctt cttatagtcc caagtgaaac cccagtagta      2280
     gcttgaactt tatcaaggga actcttttat gcgattttat cctgtctttt acgtcttccg      2340
     acataaactt aattacgtta tacacaatat ctcgtgtctg gttatgcaga acccttcctg      2400
     caccaactgg tggagactgc aatgccgcgc tatgtatgac agttttctat tttttttttt      2460
     tttttttttt atttggcttc aggcagagcc catttaatca gatacaaatc tttaacatat      2520
     ggaagcagca acacatgaac ttcgataact agaagggtct gaagcagact gatgcggcct      2580
     ccccttagaa caaagtaatg gactcgcccg gcgcttagga cgacaatgcg caacggcctc      2640
     ccctacgaag aaaccaatgg actcgcccgg tgcttaggac ggcactgcgc atcggccaat      2700
     gcatccagtc ctggtgaatt cggcattgtt ggagtttcta ccttacgaag cgatagttcg      2760
     ttatcggggt gcttcgaagc gccatttgat tgtacgcgat ttacgcgatt cactctgttt      2820
     acttggcagt gtctacttga tatttttgta gtgtctttca acaatgtcaa aaagaacata      2880
     cttaagtggt tcagaaaaaa gaaaaaaact tgcaattcaa aaagaaacca tcagcagact      2940
     acctaaactt acttcatttt tcactgttga agaaactaac aggcagagtg attcatctac      3000
     ctcatcatct caagatatct ctaaatctca aagcttagaa acggtgccca tgtttaacat      3060
     agaggataac atttgtgttt cgagttcatc agttccagtt atgaagacag ctgcacacac      3120
     atcacaacat gcttcttcca tctcaagcca cttggattca ccagacagaa gtatgttaga      3180
     aaacatatct cacgaccctg gtaagtactg tgatgaaatt ttaacggaag aagtccgtga      3240
     tatttggatt cacaagggcc cagagttttt ccaaaacaaa aatagcgact tctcagaaac      3300
     cactacacat tttgctgatg taagtggtaa aacaaaaacc agaaaattaa ctaggactgt      3360
     tttcactcgc aaattgacga atggtgagtg tgtggaaaga aagtggcttc tgtattcacc      3420
     atccatgaaa tctgtgtact gttattgttg ccgtctattc aataacactg tcggcaataa      3480
     tttgagttct tccaggggat acaaagattg gaagcatata aacaacttat taaaggagca      3540
     tgagaacagt ttacagcaca gggaatcaat gatgaattat gttgcaagaa gcaaaattgt      3600
     tggacgagtt gatactggat tgctttccca gtttaatgct gaggtcaact attggaggag      3660
     catattgaaa agaattgttg cagttgtgaa atttttggcg tcaaggggac tagggtttcg      3720
     tggagaaaat gatattttgg ggtctgaaaa caatggaaat tatttgggat gcttagaatt      3780
     aataagcgaa tttgatcctt ttcttgctga tcatatacga aagtatggca atcgtggcaa      3840
     aggaaataca tcatatttgt ctgcaaatat ttgcaatgaa tttattaatg taatgggaca      3900
     gaaagtgtta acgacgattg tcaacgaatt aaaagcagcc aagtactatt caataagcgt      3960
     ggattcctcg ccagatctct cccatgttga ccagctaact ttcatcgttc ggtacgtaaa      4020
     agatggccag cctgttgaga gatttttgca atttttgcct atggaggagc atagggctca      4080
     aagtatagaa gatactgtta tgaagttttt ggatagcttt gacatttcaa taaaagattg      4140
     ccgcggacag agctatgata atgcagcaaa tatggctgga aagtattcag gtcttcaggc      4200
     aagaataaaa gaaaaatgtg aatttgctat ttttgtacca tgtgccacac attcactaaa      4260
     tttagtaggt gttcaggcgg ctgcatgtgt ttctgaagca gtagcatact tccagtttgt      4320
     ccaaaaattg ttcacctttt tctgcttcga acaatcgatg gaaagttttg aaagaatgtt      4380
     taggtgcaaa taaagttctg aagtccctct ctgaaaccag atggtctgct cgtgctgacg      4440
     ctcttaacgc tttgcataat ggctacaatg atatttttga agctttaaag tcaattagta      4500
     gcaacactga tcagccagtg gaaacaagaa atgaagctca aagcctttgc aagaaaatga      4560
     aaaaactcga gaccattctc ctaacggaga tatgggatga ccttttgaga actatcaaca      4620
     acacaaatgt aactttacaa agtagtaccg tcacaataga cgttgcaaca aaactttttg      4680
     catctatttc cgatttcatc agttctgcac gcagtagatt cgatcagtat gaatcttcag      4740
     ccaaagagaa aaatccaggt gctgactata agggtaattc ccaaaggacg agaatttgca      4800
     gcaagcatat cactttttcc gaagattcgt cagagactgt ccagctgagt gccaaagaaa      4860
     aatttcgtgt agaagttttt ctgcctataa tcgacacatt ggattctagt ttgaagcgac      4920
     gttcagaagc atacgagaaa gttagcaaac attttagttt cctttctcag ttaaaacaaa      4980
     tcgattctga acagttgaga aacaggtgca aagaatttgc agaattttat catgcagacg      5040
     ttaatgctga tgagctcata tcagaatgtt ttcatttaaa acaatatttg aaaaacattc      5100
     caaatgaatc tccagagcta agtatatcat ccttacattc tttaataaaa gcagataaaa      5160
     tagaagaaac ctttccgaat gtaaaagttg ctacccggat atttctttgt ctaatggtaa      5220
     ccaattgcag tggagagcgt tcattttccc agttaaagag aatcaaaaat gaattacgaa      5280
     cgactatgct acaggaacga cttactaatt tgtcaatcat gtgcatagaa agtgacgtcc      5340
     ttcaacagtt ggactttgaa gacataatag aagattttgc atttcagaaa tcccgaaaga      5400
     aacctttaac agcaacgtaa gtccaatttg caaaacagta atcactagta ttttatttgt      5460
     gtatttctaa ccataataac caataaattc actaaacaaa tgtacatcat tctgatgagt      5520
     tcattcaaag gaaaattctg ttttgttgta gggtccccta atctgtgtgc cagatatctg      5580
     catagaaaga gacatactcc aaaaattgta tattttgtat tctggaaatc tttaaagaaa      5640
     tcattaattt taatgaaaga ctaatttgtg gaactaatca ttagtatttg gtttgtaata      5700
     ttttaaccaa ttaagtcact aaataaatgt acaccattct gatgcattca tttagttttt      5760
     tttaagggcc ccaaaacact gagtgcccag gggcccctgc atggcttaag acggccctg       5819
//
ID   hAT-16N1_DTa repbase;    DNA;    INV; 770 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-16N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-770
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6213-6213 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 770 BP; 211 A; 146 C; 168 G; 245 T; 0 other;
     cagagagctg caacgagtca atcattttcg ggtacacccg atcatttact cgtatccgtt        60
     ttgattaatc gcttcgggtg agcgaaatga aatgagcggt gagcgaatgc gatcgtgcca       120
     tgaatgatcg tttgtgatcg ttcaagtgtg tgatctgatc gtgtgtgaac gttcggcttg       180
     aagattttac ccgtttgtga tcgaatattt tgtgcaatcg attggtgtga tcgtgcttcg       240
     cgcctatcgg tatgacaatg cagttcgtgt tattgcttta tatttggcac aacatatttt       300
     tatatttgca caaaatgaca acaagtaata gattttaaaa gcgttttaga actaatatca       360
     aatggaagct acacgttgtc aggccaccgg aaaggaaaaa gtttcatatg gaataaatat       420
     ttctcaataa acatatatgt ataatacatt gaagtgcact ctccatctat tttatttcgt       480
     cgtcacaaga aatcatatta atccgttcac aatctattca tgtacaactg actcgaggtc       540
     gcaatcatcg ggaacgattg agcgcttcgg aacgatcatt ttgttcacct acacccgaag       600
     ttcaaaatca catcattgat cgttacgaag cgagtcgggt agttgatcgg atcgtacttt       660
     ggctttcggg tttgttcgtg attattcgtt gccgagtgag tttaccggat taaacgaaaa       720
     tgatcgcgcg atgatcgatc gtactcgatc atactcgttg cagctctctg                  770
//
ID   hAT-16N1_LMi repbase;    DNA;    INV; 1029 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; hAT-16N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1029
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3042-3042 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1029 BP; 309 A; 173 C; 198 G; 349 T; 0 other;
     tagggttacc atacgtcctc tttttcccgg acacgtcctc tttttgaggc aagaaaatgt        60
     gtccggccgg aatttataaa attctacaaa tgtcctcttt tttgggttcc gagaaagaaa       120
     atttattttt gtgtcattgg cgacaacggg ttcgttcgca ctgcagttcc aaactgttcg       180
     caactatcac gcgcatacac agagcgaaat tgccgttcac aatttcgctc tccgcatggg       240
     tctgacagtt gcaaacgatt cggaacttct ctgcgaagga acccggttgt ctatcctgta       300
     ttcaaccagt gcattctgtc ttctgcatta tgttctttgg tgttgctttt gatatacttt       360
     gtggtttagg ttaaagctgt attgtgtgtt cgagatcgta ggtagccttt tgcttcaaaa       420
     taaattacga acttaaatac aaatgtgctc ttggagaaat acagagaaag atatttaaaa       480
     aaattgaaca taccagcagc tgaagtgtgg tgtgcatatt tcaatcagtc atctagtgtt       540
     gttagttatt ctgaactgcg aaaattgtag aattcttttt tttctatacc tagtcataat       600
     gccaacacag aacgtgtgtt ttctcttgtg aacacacagt ggacaaaaga caggaataga       660
     tttaaaatag aaaatataaa agctactgta tgtgtacagt ataatttcaa acatttgaaa       720
     tgcctgagct tttatcagta cttgttgaaa aacaaaaagc tcttgagaga gatttcgtcg       780
     tcctccaaat atagttggtt caaaagtgaa aaagacaaga atgagacaat tgagtgtagt       840
     gatgatgaat aaactgtcaa ggttcataat attttgtttt acaataacca cacaaggtta       900
     ctgttttagt ttgtagtagt tttacgtggt tcattaataa agttgtaaat tacattatgt       960
     taacagtaaa gtgtcctctt ttttatatga actgtcctct tttttgatga tgaacatatg      1020
     gtaacccta                                                              1029
//
ID   hAT-16N2_LMi repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; hAT-16N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2922-2922 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1294 BP; 397 A; 243 C; 255 G; 399 T; 0 other;
     tagggttacc agacgtcctc ttttacccgg acatgtcctc ttttttggac cctaaaaatg        60
     gtccggccgg gtttttaaca aaatggggaa atgtcctctt ttttgcgttg tgcaactgct       120
     tcaacttgaa agtgcgtaaa tacaactctc tgaactgtca caatcactaa ctctagagaa       180
     tttaaccttt cttgaaacaa tgtgattttt taattttctc gtttctgtgc cgccgctgct       240
     ctgaggtcaa gctacttcgg aacaattgaa ataattggcg tggcaattgt cgcggaatac       300
     gagcttcgag gcggccaatt aaaaacatac gtctgcaaca atgcaagaca gtgcaataca       360
     catagtataa tatgaaactc tccccctccc ccctttctct ggtcggagtg ttgtgtgaca       420
     cccaaaaata agacgttcag tctgtcgtgc tgggactcgg cagttctgtg tgttgtctgt       480
     caaccacact tatgacttta agatcaaaag ctagtgcaat gttcgttata cataagttaa       540
     aaccttgttc aaaacttcat acaaataagg tcagatgcca cagtcaccat tcgcctgttt       600
     aggaccaaag agacgtaact acataaacag tgttttgaaa aaatcgattt aaagcttttg       660
     tcctaaaaac tgagtagttt ttaataatta attgcgagcc tttgtacggt aaattaaaag       720
     tttattttat tcattgcttt tttcacctag gccttacata ttccattcac tcactagaat       780
     ctagatgcta atcatgtata tagtcacgtc ggtctgatcc gaaatgggag catagctata       840
     tcaaggaacg cttagataat ttttacagtt actttattcg tgacgatttt acagtcaaca       900
     gtactatggt ttccgtaaat gatgcatcgt aaaaaatttc aggtgaaaac aggggtgatc       960
     ggcaaggtat cttataagta tggaaaaaat gttcagcact taagacgata attacaagtg      1020
     gtgaagtgat gaaatattag ggcttcactg ctatgtagtc atgtaattcg ttctacgggt      1080
     ctcaacattt catgcttctt aatttgtaag aagatgaaca aatttcgtaa gatgcgtaag      1140
     atgtattaca aacaagactc tgataataca gtagagacat cactagtact tgagttgtca      1200
     atacgagaga gagagagaga gagagagaga gagagagttc ttttatgaat ctagaaatgt      1260
     cctcttttct gaagacggac atctggtaac ccta                                  1294
//
ID   hAT-16_DTa  repbase;    DNA;    INV; 2710 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2710
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           320..2170
FT                 /product="hAT-16_DTa_1p"
FT                 /translation="MDIESVSQLISNGTYTLSGQRKGKSSIWNFLAEILKP
FT                 DDTKLGGFVFCHNCSKVLKYNAGQTSNLNRHSCCKSAKQTPDLKTVSAKDK
FT                 EDAIEKCTLWITEDCRPFSAVRGSGFLKLVQFFIKIGANYGEHVDVKDLIP
FT                 DPTTVSRHVKKCAQEKKNKIKEEISSIVSSGGASATIDMWTDNYVKRNFLG
FT                 VTFHYQKYFKFYDIVLGMKSMDFEKSTGENVLRKLQNLFMEFNVPNIDNIK
FT                 FITDRGSNMVKALENCTRLNCSSHLFSNVLDKSFFATKELSAILDSCKKVV
FT                 KYFKKANLQHLLPTSLKSQCPTRWNSHYRMLKSIIDNWGEMSNILKNNNHS
FT                 HLLLHMDINTATALVEMCESFEIVFKKLQTCSSPSLCYVLPSILKIKTICS
FT                 PNCEDISSISILKENILEKVDEIWVTNINMWHKAAYFLFPPALNMQPDDLS
FT                 EIKMFCVSRIIEHSYTSLFLESGPSSQSTPSFASTSNFSFDESEISNNLNL
FT                 SSQASSLNKSDDSFFFSNLFTSFTKTKDTPEDELEKYCKEVVEMDEHFNLM
FT                 EWWQNKQKKYPLLSRLAIQILSIPASSAAAERSFSLAGNIITEKRNKLEPG
FT                 SVDSLLFLNSYFKNFSSFK"
XX
SQ   Sequence 2710 BP; 871 A; 500 C; 494 G; 845 T; 0 other;
     cagagagctg caacgagtca atcattttcg ggtacacccg atcatttact cgtatccgtt        60
     ttgattaatc acttcgggtg agcgaaataa aatgagcggt gagcgaatgc gatcgtgcca       120
     tgaatgatcg tttgtgatcg ttcaagtgtg tgatctgatc gtgtgtgaac gttcggcttg       180
     aagattttac ccgtttgtga tcgaatattt tgtgcaatcg attggtgtga tcgtgcttcg       240
     cgcctatcgg tgcagttcgt gttattgctt tatattttgc aaaacatatt gttatattta       300
     cacaaaaggg caacaagcaa tggatattga aagcgtttca caactaatat caaatggaac       360
     ctacacgttg tcaggccaac ggaaaggaaa aagttccata tggaatttct tggcggaaat       420
     tctcaagcca gacgacacca aacttggagg ctttgtattc tgccacaact gttctaaagt       480
     gttaaagtac aacgcagggc agacatcgaa tttaaacaga cacagttgct gcaaatcagc       540
     gaagcagaca ccagatctca aaactgtgtc tgctaaggac aaagaagatg ccattgaaaa       600
     atgcacctta tggatcactg aagactgccg acccttttca gctgtgcgtg gatctggctt       660
     tctaaagcta gtgcaatttt ttatcaagat cggtgcaaat tatggagaac atgttgacgt       720
     taaggatctg attccggatc caaccactgt ttcccgccac gtcaaaaagt gcgctcaaga       780
     gaagaaaaat aaaatcaagg aagaaatatc gagcattgtg agcagcggtg gagcttcggc       840
     aacaatcgac atgtggaccg acaactatgt gaagcgtaat tttctcggcg taacatttca       900
     ttaccaaaag tattttaaat tctatgatat cgttttgggt atgaagtcta tggatttcga       960
     aaaatctaca ggggaaaatg ttcttaggaa acttcaaaat ctatttatgg aatttaatgt      1020
     accaaatatt gataatatca aatttattac tgataggggc tccaatatgg taaaagcttt      1080
     agaaaattgt actcgtctta actgcagtag ccatttattt tcaaacgtgt tggacaaatc      1140
     cttttttgcc accaaagaac tttcagctat tttagactcc tgtaagaaag tagtaaaata      1200
     ttttaagaaa gctaacttac agcatctttt gcccacttca ttaaaaagcc aatgtccgac      1260
     caggtggaac tcgcattata gaatgctcaa atcaataatt gataattggg gcgaaatgag      1320
     caacatctta aaaaacaata atcacagcca tctgttgttg catatggaca taaacactgc      1380
     tacagcgctt gtagaaatgt gcgagagttt tgaaatagtt ttcaaaaaac tacaaacttg      1440
     tagctctccc tctttgtgct acgtgctccc atctatttta aaaattaaaa ccatttgctc      1500
     cccaaattgt gaagatattt cctcaatttc aattttaaaa gaaaatatcc ttgaaaaggt      1560
     tgacgaaatt tgggtcacaa atataaatat gtggcataaa gctgcatact ttttatttcc      1620
     accagcatta aatatgcagc cagatgactt gtcagaaatt aaaatgttct gcgtttctcg      1680
     tataattgaa cattcttaca cttcattatt tttagaaagt ggaccctcaa gtcaatccac      1740
     gccttccttt gcttcgacat ctaatttttc ttttgatgaa agtgaaatat caaataattt      1800
     gaatttaagt tctcaagctt catcacttaa taaatcagac gatagtttct ttttttcgaa      1860
     cttgtttaca tctttcacaa aaaccaaaga cactccagag gacgaattgg aaaaatattg      1920
     taaggaagtg gttgaaatgg atgaacattt taatttaatg gaatggtggc aaaataagca      1980
     aaaaaaatac cccttattgt caaggctagc aattcaaatt ctttctatac ctgcaagcag      2040
     tgcagcagct gaacgatcat tttctttggc cggtaatata attacggaaa aacggaacaa      2100
     actggagccg ggatcagttg acagcttgtt atttcttaat tcctatttta aaaattttag      2160
     ttcctttaaa tgaaatgtta tttagttgat aaagacaaaa ccatgaatta attttatgta      2220
     cttaatatgc ttatttttta aaaaaaaact gtgccttagt ttgtaagcat acatgaagtc      2280
     aatacgttta atttaatctt acatttctta taaaacatgc catagtttgt aagcatacat      2340
     gaagtcaata tcgtttaatt taatcttaca taaatatttc tcattaaaca tataccacat      2400
     tgaaacgcac tctcctctaa ttttatttcg tcgtcacaag aaatcatatt aatccgttcg      2460
     caatctattc actcgaggtc gcaatcatcg ggaacgattg agcgcttcgg aacgatcatt      2520
     ttgttcacct acacccgaag ctcaaaatca catcattgat cgttacgaag cgactcgggt      2580
     agttgatcgg atcgtacttc ggctttcggg tttgttcgtg attattcttt gccgagtgag      2640
     tttaccggat taaacgaaaa tgatcgcgcg atgatcgatc gtactcgatc atactcgttg      2700
     cagctctctg                                                             2710
//
ID   hAT-16_LMi  repbase;    DNA;    INV; 5729 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5729
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3043-3043 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(695..736,740..1135,1056..2468)
FT                 /product="hAT-16_LMi_1p"
FT                 /translation="MIQRIIIILQGGWTKLTKTRVNTKREFVLPHLPPKLM
FT                 TFFAKKDSKRSDLVRAAEGALSFHTVKHHQSFKSMDCTGKLQKVLFKDSNI
FT                 AKEMSCARTKTEAIVNSVLSPHSVNVSIDVLKGISCFGVATDGSNHGSTKL
FT                 FNSHSVLRVFHVLVLQQTAVTMVLRNCSILIQYYDVKSGGIQTKVIELKSM
FT                 PNEKSETIASYICDTLRSRGIDSKCVAFSGDNTNTNFGGISGIGKRSGNNV
FT                 FTHLKNNLNDSIVGVGCPAHVLHNCIQHGIDAGLTLDVDSTILKIFNYFSV
FT                 YTVRTESLKDFCEFVDIQYRQLLGHSKTRWLSLFPCVTRVIEMYPALKSYF
FT                 MSQDEIPILIKVFFQDELSEARLWFVHSLMSLFHHNILALEKEKNSLVEMI
FT                 HILESVLNVLQERQLQSFKSLKLKEILRKKRNEGYDSKCDMLEGEIAHVYD
FT                 ATIKYLKKWLVQYQEFFVFRWMGLKNVPNWEDVEQTILYLNDKLNIKIDDI
FT                 QCFDQFCNFQKFLTNQANVNGGDQLSNDTWCKYFQETKNIACFSELLKMAE
FT                 FFFAIPSHNASVERIFSLVNSQWTKDRNRLSVESVKGIISVQYNYKDVSCV
FT                 QFYDYLLQNKKLLQNWVIK"
XX
SQ   Sequence 5729 BP; 1917 A; 986 C; 1062 G; 1764 T; 0 other;
     tagggttacc agacgtcctc ttttacccgg acatgtcctc ttttttggac cctaaaaatg        60
     gtccggccgg gtttttagga aaatggggaa atgtcctctt ttttgcgtta tgcaactgtt       120
     tcaacttgaa aatgcgtaaa tacaactctc tgaagtgtca caatcactaa atctagataa       180
     tttaaccgtt cttcaaacaa tgtgattttt tttctagaat tctctcttct ctgtgccgcc       240
     gctgctctga ggtaaagcta ctttagaaca attgaaataa ctggcgtggc aattgtcgcg       300
     gaataggagc tgcgaggcag ccaattaaga acacaggtct gcaacaatgc aagatacacc       360
     ggcttctaag aatttcacgt tagaacgatt atttacaact gcttaactct cagttgtctg       420
     ttggttgctg tgaagggaag cagtggtcac gtttcatcga aatcatgcca aaacgcaaat       480
     gtgtctttag tgaggaacta caaaaacgat ttcttgactt caggcccgga agaaacagct       540
     ccgaggcaga atgtcttatc tgcccacctg gtacattcgt ttcaattgcc aacaaaggta       600
     aggtttatta tcttgcaacc gtttgtgcgt aaacaccaat tatgagagtg gaaattcggt       660
     taaaatcgtt cagtgtttat gccctgaatc atttatgata cagcgtataa ttattatttt       720
     gcaggggggt tggacctaga agctcaccaa aacacgggta aacacaaaac gcgagttcgt       780
     actgccgcat cttcctccaa agttgatgac tttttttgca aaaaaggatt ctaaacgtag       840
     tgatctggta cgtgcagctg aaggcgccct atcttttcac acggtcaaac atcatcaaag       900
     ttttaaatca atggactgta caggaaaatt acagaaagtg ttattcaaag actcaaatat       960
     agctaaagaa atgtcatgtg ctcgcactaa aacagaagca attgttaatt ctgtattgtc      1020
     accccactct gttaatgtgt ctattgacgt tttaaagggt atttcatgtt ttggtgttgc      1080
     aacagacggc agtaaccatg gttctacgaa actgttcaat tctcattcag tactatgacg      1140
     taaaatctgg aggcattcaa acaaaggtga tagaacttaa aagcatgcca aatgaaaaat      1200
     ctgaaacgat tgcatcttac atatgcgata ctcttagaag tagaggtatt gatagcaaat      1260
     gtgttgcttt ctctggagac aataccaata ccaatttcgg tggaatcagt ggcattggta      1320
     agaggtcggg aaataacgtt ttcacccacc tgaaaaacaa tttaaatgat agcatagtag      1380
     gagtaggctg ccctgctcac gttttacata actgtattca acatggtatt gatgcaggac      1440
     tcactttaga tgttgattcc acaatattaa aaatatttaa ttatttttct gtttacacag      1500
     tacgcactga aagtcttaag gacttttgtg aatttgtaga catacaatat aggcaactac      1560
     tgggtcattc taagactagg tggctgtctc ttttcccttg tgttacaaga gtaattgaaa      1620
     tgtatcctgc actgaaatca tatttcatgt ctcaggatga aattccaatt ttgattaaag      1680
     tgtttttcca agatgagctt agtgaagcac gattatggtt tgttcattct cttatgtcat      1740
     tgtttcacca taatatttta gctctagaaa aagagaaaaa ttcacttgta gaaatgatac      1800
     atattcttga gagtgtgttg aatgttcttc aagaaagaca attacagagt ttcaaatctt      1860
     taaaactaaa agaaattttg agaaaaaaga ggaatgaagg ttatgattct aaatgcgata      1920
     tgctagaagg agaaatagcc catgtgtatg atgcaacaat taaatatctt aagaaatggt      1980
     tggttcagta tcaagagttt tttgtgttta ggtggatggg tttgaagaat gttccaaatt      2040
     gggaagatgt tgaacaaaca attctgtatc taaatgataa gcttaatatt aaaattgatg      2100
     acatacagtg ctttgaccag ttctgcaatt ttcagaagtt tttgacaaat caggctaatg      2160
     tcaatggagg agatcagttg tcaaatgaca cctggtgtaa atatttccaa gagacaaaga      2220
     atattgcttg tttctcagag ctgcttaaaa tggcagaatt tttctttgct atacccagtc      2280
     acaatgccag tgtggaaagg attttttcac tagtaaacag tcagtggacc aaagacagaa      2340
     acagactcag tgttgagtct gttaagggaa ttataagtgt gcagtataat tataaagatg      2400
     tctcttgtgt acagttttat gattatttgt tgcaaaacaa gaaattactt cagaattggg      2460
     tcatcaaata aatatatagt acttcaggaa ataagataca gatgaagata actagtttac      2520
     acatgatatt ttgttattgt aacattgtat gactttcact agtagtcagt ggaccaaaga      2580
     tagaaacaga cccagtcttg agtctgttaa gggaattata agtgtgcagt ataattataa      2640
     acatttcttt tgtgtatagt tttaagatta tttgttgtaa aacaagaaat taccttcaga      2700
     aattgggtca tcaaataaaa tatcagagta cttcagggta taatgataca catgaagaag      2760
     actagtttac tcatgatgat tctgttactg tttgtattaa aatctgcctc atattattgt      2820
     aacattgtat gattaaataa actgatatga aatgcttcag ctgaaaatca tacagtgcag      2880
     tacacatagt agaatttgaa actctcccct ttatctgtag gctttctcaa gtgggagtgt      2940
     tgtgtgacac ccaaaaataa gacgctcatc tatgtcgtgc tggggctcgg cagttctgtg      3000
     tgttgtctgc ctaccacact tacgagttta agatcaaaag ctagtggaat gttcgttata      3060
     cataaattaa aaacttgttc aaaacttcat acaaatgagg tcagatgcca cagtcaccat      3120
     tgccatttca ccatgcgcct gtttaggacc aaagagacat aactacaaaa agagtgcttg      3180
     gatataaatc gatttaaagc ttttgtccta aaaactgagt agtttctaat aatattttgc      3240
     gagcctttgt acggtaaata aaaagtttat ttattcattg tttttcccct agctgttaca      3300
     tattccattc actcactaga tgctaatcat gtatatagtc atgtcggtct gatcctaaag      3360
     ggcgcatagc tacatcaagg tacggttaga taatttttac agctatttta ttcttgacga      3420
     ttttacaatc aacagtacta tggtttccat aaatgatgca tagtaagaaa aaaaaaaaaa      3480
     aaaaggtgaa agcagaggtg atcagcaagg tatcaaataa gtttggaaaa ctcgcattcg      3540
     ggaggatggt ggttcaaatc cacgtccggc catccagatt taggttttcc gtgatttccc      3600
     taaatcactc caggcaaatg ccgggatgtt tcctttgaaa gggcacggcc gatttccttc      3660
     cccatcctta accaaaaagg gactgatgac cgtagtagtt tggtcccttc aaaacccccc      3720
     tcccccgaaa ccaatcaacc aaccaagtgt ggaaaaatgt tcagcactta agacgaaaat      3780
     tacaagtggt gaaatgatga aatgttagac ttcactgcta gtagtcatgt aattggttcc      3840
     acgggtgtca atatttaatg cttcttaatt tgtaagaaga tgaacaaata ccgtaatatg      3900
     cattagatgt agtacaaaca agattcttat aacataggac agccaccagt acttgagtta      3960
     taaatacgat tttgtcacag cttcaaactt aatatttttg taattttcat tttgtacatt      4020
     tgaagactgt atgaaaacag tatatcacat catttgaaaa tgaaggtaga gatcgttgaa      4080
     actggtaatg gaaaaaaggg ggggggcaat agcgactatg gcatttgacc tcatttgtat      4140
     gaagtcttta aaaattattt accatttgca ttcctgaacc gtaaaaaata tcttttttgg      4200
     tgtctgttag gcccacagca ttatatatgt tttcaatgac attatgtaat taaaactcca      4260
     aatgcagctt tagcagacag tttctattta ttactatagg cacctatttc gtcttgaatg      4320
     gcataatcag gttatttgtg aaaatatgaa aatttacgac acatcaaaaa atcacaaaca      4380
     ccaacaagat tccaactgca aatattacga aaattataaa ttaactgcat gtaaccgata      4440
     tagaatcgtt gatttatctg tcaaggaact gtcaaacggt aattacgaaa atctataaaa      4500
     aaattataac caatattgct ccagtaagaa cgtaggagta taaaataaac agcttgacag      4560
     tatcaaaacc accgatatat atgggtgtca agaccaacag gcgtatgtaa ctacacgtat      4620
     ttataaattt aacttatagt tagttataaa attcgatgta ttatactgaa aacatgcaca      4680
     ttttcacaga taacctgatg atggcattca agctgaaata gatgcctata gatagaaatt      4740
     gccttataag gcagcatttg gagttttaat tacataatgt cgtaaaaatg tcgtttcaca      4800
     aaattaaact atttattatc tccgaaaagt gggcactgtt ttgcaacgca aacaccgtca      4860
     caatgaggca acaaaataaa tttgcaaata attgacagta tttcttaagt ttaggatcac      4920
     ctagtcagga ttggatgtgg acaattggga ttataattgc aaagcaagtg tgctttaaat      4980
     aacatcgatt tatgtctttg taagtactat ggtacatgaa ttaatgaaaa ttactcatgt      5040
     aattcctact gtaaaaaata agttcctagt atcaaacagc aaacaattgc tcacttgaag      5100
     ctttattcga tctaaatgta tcgttaagac cttggaggat acctcaaatc tagatggaag      5160
     actgcttggg aaaagtgtga caagtttcct agtctgtgca gctctcaact gcaaagtaaa      5220
     acgaatgcaa gatccaccaa taaaaggaac actagatgtg tattgtatca tgcaaattgg      5280
     agctgctcag agaccggata gcgcaaacac aaagtgtgga aattacttaa aagtatagca      5340
     aacgcgccgt gcccaatgct gcatctgaac cttcagaatt tcgttcctcc tcctccacaa      5400
     aaatcctctt ggagggcagt actccagcca gactcttact acagttacca gcgaattctg      5460
     tcgacacaaa atgaagcttt cttccatagc cagtcagcca caaattttgc tccaatttat      5520
     taaactaaat aaagaataaa aatgacaaaa atgtcgcacg tgactgaaaa gccacaaaat      5580
     attttcatga tataacactg tagatgtaaa aattataatt tatcttaatg tcagttaggt      5640
     aaatgtcgaa taacctatac cacctttgaa aatttttgta tgactctaga aatgtcctct      5700
     ttcttgaagg tcgtcatctg gtaacccta                                        5729
//
ID   hAT-17_DTa  repbase;    DNA;    INV; 2951 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.11, Created)
DT   06-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2951
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6238-6238 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           398..1981
FT                 /product="hAT-17_DTa_1p"
FT                 /translation="MSPAKKSINILKYYEDIDSDHVKCKTCFRVIKNGRVF
FT                 NLKKHLQLHDIRPEQQENDSGCMQTKKTVKPQLIKVKINKKNLIRSYIGLV
FT                 TEDSIPFHVLNSTNMRNIIDPICQGLNEKSGKNIILNGXKCKSVLKQVSAN
FT                 VRLEIHQECKNRLLSLKIDSATRLDRNIFGISAQFVSKQEIKSRILGMVEL
FT                 KGAGSSTSQNLAREIIAVLEKYEIALTQIVSITSDNGANMIKTSKILSEMH
FT                 MSDDDIDEVCIEENIEYTQQDDLYENTENMYVGEIQIVRCAAHTGQLCALD
FT                 VTKNANIREYLLTCRNFAKHIRKQSNDYRNLFELQNFKLPQLDCPTRWGST
FT                 YKMIDLLNKAKAILGPIETVENKSKDDYFVVNEQLWEFMDSYVTIMAPLQK
FT                 TIVQFQQEQLHYGNFYALWLVCKLSTKQILATSASSKESILYTIGETLLES
FT                 MEVRTKKLVSNVGFDACLYLDPRFHHTLDSSQKDRAIHFLKKLWAQIKIHS
FT                 PLPNLVSSNNSMASDTVHEGSNFDLLDDFFKC"
XX
SQ   Sequence 2951 BP; 1014 A; 521 C; 530 G; 883 T; 3 other;
     cagtgtttgc aattactact ccgtagtagc gagatgaata caaatattgc tatgctattg        60
     ctatcgctcc ctttttgacg agagccgtag cagagccata gcaaaataac gagaaagttt       120
     gtgctctgct ctgctcgtag ttttgtcgct tgagaaactg tagcaatagc ggtagcagaa       180
     aatcaagtcc tgtgctctgt gtagcagtaa cggtagcaaa aaattgacag cgagatgaga       240
     gcagagcact tgcttttttt catgtgctac gactctcgct tgtgttagtt ttcttatttt       300
     ctgcaccttt cttatgcagc gttttctttt taattgtcgc tttgtagttt taagaaaata       360
     tttttgtcac ttttgagttt tgattaactg cgtaaacatg tctccggcaa agaaaagtat       420
     caacatttta aaatattacg aggacataga ttccgaccac gttaaatgca aaacatgttt       480
     tcgagttata aaaaacggcc gtgtttttaa tttaaagaaa catttacaat tgcatgacat       540
     ccgacctgag cagcaagaaa atgattctgg ttgcatgcag accaaaaaaa ccgtgaaacc       600
     tcaactaatt aaagttaaaa tcaacaaaaa aaatttaatc cggtcataca ttggacttgt       660
     cactgaagac agcattccgt tccatgtgct aaactcaact aatatgcgca acataattga       720
     ccccatatgt caaggtctta acgaaaaaag cggaaaaaac attattttga acggaakcaa       780
     gtgcaagtct gttctaaagc aggtatcagc gaatgttaga cttgaaatac atcaagaatg       840
     taagaatcga ctgctttctt taaaaataga tagtgcaacg cggcttgatc gaaatatatt       900
     cggcatcagt gctcaattcg tcagcaaaca agaaataaaa tcgcgaattc ttggaatggt       960
     ggaactcaaa ggagcaggtt caagtacatc ccaaaacctc gctagagaaa ttatagctgt      1020
     tttagagaaa tacgaaatag ccctgaccca aattgtatca attacatcgg ataatggggc      1080
     aaatatgata aaaacttcaa aaattttatc agaaatgcat atgagcgatg atgatattga      1140
     cgaagtctgt attgaagaga acattgagta cacacagcaa gacgaccttt atgaaaatac      1200
     agaaaatatg tatgtgggtg aaatacaaat agttcgatgt gcggcacaca ctggacagct      1260
     ttgtgcactc gatgtaacaa aaaatgcaaa tataagagag tatttgttaa cctgccgcaa      1320
     ttttgccaaa catattcgga aacaatccaa cgattaccgt aatttatttg aactgcaaaa      1380
     ttttaaatta ccccaattgg attgtcctac tagatgggga tcaacatata aaatgattga      1440
     cctactcaat aaagcgaaag ctatattagg ccctattgaa actgttgaaa ataaatccaa      1500
     agacgactat ttcgttgtaa atgaacagtt atgggagttc atggactcct acgttacaat      1560
     tatggcacca ctgcaaaaaa ctatagtgca gtttcaacaa gaacaattgc actatgggaa      1620
     tttttatgct ctgtggctgg tttgcaagtt gtcaacgaaa caaattttag caaccagcgc      1680
     ttcaagtaaa gaatccattc tttatacaat tggagagacg cttcttgaaa gtatggaagt      1740
     aagaacaaaa aaattagtat caaatgttgg cttcgacgct tgcttatacc tagacccaag      1800
     atttcatcat accctggaca gctcacaaaa ggacagagca attcattttc taaagaaatt      1860
     gtgggcacaa attaaaatcc acagccccct tccaaattta gtatcatcaa ataattcaat      1920
     ggcttcggat actgtacatg aaggaagtaa tttcgatctt ttggacgact tttttaagtg      1980
     ctaacattgt tccgaatgag tcaacagatg tccatggaaa gattgaatcg ttgccgtata      2040
     tgaaatctag tgaaaatgtt ttaaatttct ggaaagtaag gaaattaagc gatccagagc      2100
     tgtatgcgct aagcaaagta tgctttgcca tacccccaac tcaagtaaga attataaccc      2160
     aatttaaaac aaaatattta ttaacaagtg tttaaatttc ttaatatttg taggtaacwa      2220
     tagagcgggc tttttcctct ttaaaactgg tgcwgtcgga taaccgaaat cgattaagtc      2280
     acgaaacatt ggaaaatatt cttcttgtcc ggcttaactc aactcacttg gatagtgcca      2340
     tcgacaattt aaatttattt gaagacgaag aagatgaggg gtgattcgtg tttctaaatg      2400
     cataagttct tatttctttt ttatatttaa ttaacattta cttaatacat taatttgaat      2460
     actgtgcctt ttaattttta atttttgatt taatctgaaa actgtgaatg aatattcgtt      2520
     ttttattgat ttttagtttt tgaataaaat actattattt attttattat tttaaaccac      2580
     tttattctga cagaaaatat tttctttctc attctggcaa agcgacaatt aaaaagaaaa      2640
     cgctgcataa gaaaggtgca gaaaataaga aaactaacac aagcgagagt cgtagcacat      2700
     gaaaaaaaag caagtgctct gctctcatct cgctgtcaat tttttgctac cgttactgct      2760
     acacagagca caggacttga ttttctgcta ccgctattgc tacagtttct caagcgacaa      2820
     aactacgagc agagcagagc acaaacattc tcgttatttt gctatggctc tgctacggct      2880
     ctagtcaaaa agagagcgat agcaatagca aaacaaaata ctacgagagt agcgtagctt      2940
     ttcaaacgct g                                                           2951
//
ID   hAT-17_LMi  repbase;    DNA;    INV; 4880 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4880
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3044-3044 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(765..1568,1593..1994,1820..2908)
FT                 /product="hAT-17_LMi_1p"
FT                 /translation="MEVNASVKNLLEKPFSMRTLQEKLEVVRKGRPKPTLP
FT                 YLVSEHKGKKDCYIRHFSVSQYESVEWLTGCPDSNKLFCWPCLLFSREKSS
FT                 WNKHGFSDLNHLSVGQQRHSKSQSHIQSFLQLKMFGKDRVDTLLSEQHQGY
FT                 ISQHNEQVTRNREILKRLIDAVCFLAKQELPFRGHNESDTSINKGNYLELL
FT                 SVLKNYDPLLEAHLNTSTVFRGTSATIQNDLIKAVSEVVKESLKQEIKSAD
FT                 FVAIMLDETSDILCKSQFYVMFMEECIVSADRTANGLFAHVEHIVGEFALG
FT                 EKLVGQTYDGASVMSGHINGLQSKVLSRYPMALFTHCYAHVLNLVLQQSIS
FT                 NVKACKIFFQTLSGLSSFFPSLLKELVHYRNLFKESCHHLPPLGGISHPDW
FT                 STQLQNTECKSMQNIFSNSKWSFFIFSKSSKRTCALQEFVQRKLPSLAPTR
FT                 WNFSSRLVHTVTEHRVELLQFFDSVLDNTDNWDSDAVVKSQGFLAFLNNFQ
FT                 SIFLLEIFSKLFSYTDVLYNLLQTKNYDVVYCSKKIKEVSEQLQFDREHSF
FT                 DIFWKSSVAQNCDTYCKQRVKRHHSDETEMDIYRRLYFEIVDHILCEIEQR
FT                 FSSFDKLEFFHLLYSQNYENYKRKFPDHLLHKLSAIYGPLLDYVALKNELI
FT                 VLYSSPEFSSKNVYEVVSLMNEHCLISGFSEVYKLSTLILTIPCSTSSVER
FT                 SFSALRRINSYLRSTQSQERLSDLSLLSIEKQTLAILKSKPLFYDNVIEKF
FT                 LCLSQDRRIELMYK"
XX
SQ   Sequence 4880 BP; 1406 A; 1002 C; 1034 G; 1438 T; 0 other;
     caggggcgta tattcaatgt gtgctaggcg tgcaccacac gccctgtcaa atgctctcca        60
     ttttatgagc acttctggtt ttcttattta atctttggaa aataattagc ggaggaacag       120
     caatgttttc tgttctttta ctggacatga gtatgacgaa ctacagtcaa cggcagaaaa       180
     tgagagctaa cgcgcaccta cgtactgcag tgggacaggc cgacagccct ctcgttgccg       240
     gctagcagct gagctgagcc ttgtggaggg ggaagcgttc tgtggcgcgg ccgcacacag       300
     cgctgaggaa atgtggccac gagggctgag gcgggagggt gcgcatgcac gcagttcttg       360
     gagagggctg cggtttgacg tcacttaggc tgcggccagc cagcgcacac ctcctagtaa       420
     cgggatttct gggcctgtgg gggggaagcg ttctgtggcg aggctgagaa actgtgggca       480
     cggggggtag ggcgggaggg tgcgcacgga cgcagttctc ggaagagggc tgcggtttga       540
     cgtcactcta ggcgtgcggt gaacgcgtcg cacgactcgt tagtagccaa ctcgctggac       600
     gggctttcgc acgtgggtgt tgcgcattct agacacgttt accaagctgt tttccgtttt       660
     tgtcctaaat tgtagatgtt agttaccatt taaaatacag tgtaccgttt tgttcaaaaa       720
     gtgttttagt ttttaacagc gtttcttcca gttcaaaact tacaatggaa gtaaatgcat       780
     cagtaaaaaa cttgcttgaa aaaccgtttt cgatgagaac tctgcaagaa aaattggaag       840
     tagtgaggaa aggtaggccg aagccaacat taccttacct agtatcagag cataagggca       900
     aaaaagactg ttatattaga catttttctg tttcccaata tgaaagtgtt gagtggttga       960
     caggctgccc tgattcaaat aaacttttct gttggccatg tttgctgttt tccagagaaa      1020
     aatcgtcatg gaataaacac ggtttttcag acttaaatca cctatcagtt gggcaacaaa      1080
     gacattcaaa atcacagagt cacattcaat catttttaca gttaaaaatg tttgggaagg      1140
     atagagttga taccttatta agcgagcagc accaaggtta tattagccag cacaacgaac      1200
     aagttacgag gaacagggaa attttgaaaa gactcattga cgcagtgtgt tttttagcta      1260
     aacaagagct cccatttcga ggacataatg agtcagatac ttctattaac aaaggaaatt      1320
     acctggaatt gctaagtgtg ttgaaaaact atgatccatt gttagaggca cacttgaata      1380
     catccactgt gtttcgaggg acttccgcaa ctatacaaaa tgaccttatt aaagcagttt      1440
     ctgaagtagt caaggaatca cttaaacagg aaataaaatc agcagacttc gtagccataa      1500
     tgcttgacga aacttctgac atattgtgta aatcgcaatt ttacgttatg ttcatggagg      1560
     aatgtatatg aaagattcgt tggttttgtt gagtaagtgc agacagaaca gctaatggtt      1620
     tgtttgctca cgttgaacac atagttggtg aatttgccct tggggagaag ttggttggcc      1680
     agacgtacga tggagcatca gtaatgagtg gtcatattaa tgggctgcag agtaaggttt      1740
     tgtcgagata tcccatggcc cttttcactc actgctacgc ccatgtatta aatttggttt      1800
     tgcaacaaag tatctctaat gtaaaagcat gcaaaatatt ttttcaaact ctaagtggtc      1860
     tttcttcatt ttttccaagt cttctaaaag aacttgtgca ttacaggaat ttgttcaaag      1920
     aaagttgcca tcacttgccc ccactaggtg gaatttctca tccagattgg tccacacagt      1980
     tacagaacac agagtagaat tgttacaatt ctttgacagt gttctggata acactgataa      2040
     ttgggacagc gatgcagtgg taaaatctca gggttttctg gcttttctga acaattttca      2100
     gtcaattttc ttgttggaaa tattttctaa gctgttcagt tacacagatg tattgtataa      2160
     cctactgcaa acgaaaaact atgatgtagt ttattgcagc aagaagatta aggaggtttc      2220
     agaacagctc caatttgaca gggaacacag tttcgatatt ttttggaaat cgtctgtggc      2280
     tcaaaactgt gatacatatt gtaaacagag agtgaagaga caccattcag atgaaacaga      2340
     aatggacatt tatcgtcgtt tgtattttga aatagttgac cacattctgt gcgaaataga      2400
     acaaaggttc tcttctttcg ataagctgga atttttccac ctcctttact ctcaaaacta      2460
     cgaaaattac aaacgaaaat ttcctgacca tttattacat aaactgtccg caatttatgg      2520
     accactctta gactatgttg ccttaaaaaa tgaactcatt gtactataca gttcacctga      2580
     gttctcttca aaaaatgtgt atgaggtagt ttcattgatg aacgagcatt gcttgatttc      2640
     agggttcagt gaagtgtata aattatcaac tttgatactg acaattccat gtagtacatc      2700
     ttcagtggaa agatcttttt cggctcttag aagaatcaac tcgtatctac gaagcacaca      2760
     atcccaggaa agactgagtg acttaagtct actttccata gagaagcaaa ctcttgccat      2820
     tctgaagagc aagccccttt tctacgacaa cgtcatagag aaattcttgt gcttgtccca      2880
     ggatagacga attgaactga tgtacaagtg acgtttttgt aagtaaatct atttataatt      2940
     ttctttaaaa tcaattctat ttccaaaacg agactgagag tatttaaaaa atcgatgtta      3000
     ttattcacaa cttgagcatc attctacagt atgtgtggct tcctcagtgg tgggattatt      3060
     aatttcaatt tcagctgctg cttgtgacca tctccacagt tagctgacta ttactatagc      3120
     ggccagagag tcgtcagcgc ctggccacag ctgcacctct caccgactcg gactgatact      3180
     ctcatgacga acactgcaaa gtcaactggt accgatcttg cacgattctt gatactaaca      3240
     gaacgttatc cttgcatgcc tgtcacagat agcaagcaac cgctactgcc cttacttccc      3300
     gactagactg tcacagatgt tttctttccc ccttggcact tgccttggta cttttttccg      3360
     tctgccctta aaaccgctac ccttcgttcg tttttcgtcc actatctatc ctgcccacat      3420
     gtacgaacat cacagacccg catcctgtga tctcaactga attactaaca aatgcagagg      3480
     tgacagtaga acttttgtga tggtcaccat gctagtgcag gcgtggaggg gctccactct      3540
     ttctttaaaa aataaaaatg aattccagat tctattcctg atacattcaa taattttaaa      3600
     aggtacaagt aaggctgtcc aaagggtgtc aaaataagat aggcctaaga ttgtagtttt      3660
     ttcactattc gtctgtagtt tcaataaaag tcgtattcac aacttgttaa tacctcagaa      3720
     attctacgat ctggtactgc aatgtcaata gctcataatt acttttaaaa tatgcgcttc      3780
     tcttaacata aatgagaaat gtgtttgtct cgcttcttga cgcgatcagg cccagaggac      3840
     cgctcgcagc cacgcggctc cacttgcact ggatcctgtg tactgcctcc tgtcgccagg      3900
     gcccctctat gtggatctgt agcaagtcct catggattcc acctctccac cctttgtttg      3960
     gtcttcctca ctgtctcctt ctgcagggag agaaatcagt gtttatccat tcgagggaca      4020
     cgtcctgccc aaatgcaagc gctcggctgt catcagccct acaatgtttc gtctgtgtct      4080
     gtaccaaatt tgcattatcc attacgtttt tagaaatatg gaattttcaa atgtttaaac      4140
     actatttttg gaaatgtttt tgcaacatat tacaactgtt gatgcattaa gtattaattt      4200
     taaaaataga tgacaattgt caaagtgtga ctttatagat attttttttg gtaagagaat      4260
     ttcccattcg ctattcttat caactaaatg aactgaaaat atttttgcag atcaaataat      4320
     ttatataatg gaagtttgct ataaaaatga aataacgcaa tttgagtaat aaattacaga      4380
     agacagtgtt gatggcttgc actagatttc ttaaaataat ttttgtcaac ttcattacta      4440
     atgtgcaaaa tacaattgga attaatacac aatcatcgca aggcaacaaa ttaacaggca      4500
     ccgctgaagc gatgagatgt tgcaacatta cacggttgca gatgccgcag cggtggtacc      4560
     ggagacaacg ataaactgag gcgcgaggtc cctcacgacg agtgcggctg aatacggcac      4620
     tgccggagag gcagtaggtc acagcagagc atgaccagtg gtccattaat agcagccgaa      4680
     gaggcccatc taggtcagaa ggtggttttt gaaatgatta gcaaatgaca gtcatcaaac      4740
     acgtgctgtc agtacccctc tcagcgctgc acttgccata gaagtctgtg cttttcgctc      4800
     ccccccccac ttcccaggct gtttagttca gtgatcaaga gtacagcacg cccaacaaat      4860
     tttttcacga gacgccactg                                                  4880
//
ID   hAT-18_DTa  repbase;    DNA;    INV; 3499 BP.
XX
AC   .
XX
DT   06-SEP-2021 (Rel. 26.11, Created)
DT   06-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-18_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3499
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, 98% identical to other partial
CC   copies. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..2027,2031..2222,2238..2675)
FT                 /product="hAT-18_DTa_1p"
FT                 /translation="MAARNKKFSFVWKYFVNTSDPDKAICTLCKVLMKNDR
FT                 TYNLKSHLWKVHGIEDGGVKKPYSTKTQSIQVKLNKNQLIRSYIGLVTEDN
FT                 IPFNVLNSSNLRNIIDPICCGFQEKTGKRFVLNASNVRAAVCKVADNIRND
FT                 MKLELSQRLLSLKIDSGTRLCRNIFGISAQFIKDDQVKSIILGMVELKGVG
FT                 SSNSKNFALEIVQTLEKYDIKLSRILTITSDNGANMIKATKILSTVCSNEE
FT                 SHEEELNDDYLNNITNFESEPNITVGNIQICRCAAHTAQLCALDVTKDAEI
FT                 KRFLLSCRNLTKFIRKASNGFRDAFELRKAKVPQLDCSTRWGSTYNMIKYV
FT                 LDAKDALIAIESVKNKSSDENFDINDNLWEFMEAYCEVFAPLQETIIKFQS
FT                 ESLHYGNFYAQWLKCKMVVGAIVSRNSTKIVVQKIGTALLESIEKRSKNLL
FT                 NNEGLNACLFLDPRFHHIITGQKRDDAVAYLVNLWKKLQIESPIHLPVGPA
FT                 SSSSETNASISDEAEEMLDAFLTNQIKCIENFNNTDVNTKIQNLHLPFIRS
FT                 NNNILKFWSERKHSEPELYFLSNICFAIPPTQVTKNFIIFKVPILNTFFQV
FT                 TIERAFSQLKLILTENRNRLSSEALENILIVKLNSDYLDKAICELDMFSDE
FT                 IQNKQNTKCTLEKFSFTFMYIMYIFSFVYFAFKQGPKIIIIFIPLNKKSAT
FT                 YNSNVQFLAEGKIYIKTFGLIELKKSHTSQNLCTQIKSNGRNMIKAPAKDE
FT                 DDHDEEDVADDFEDEGLLMNIHIFMPFSQFTSTRRKGLFSTPRIG"
XX
SQ   Sequence 3499 BP; 1228 A; 587 C; 637 G; 1047 T; 0 other;
     cagggtttca aaaactgtga gctgagaagc aaaagcacct atatttatgc tttgctgtta        60
     ctgtgagatc aacagacttt ttacaggaaa gcaaagcaaa agcaaaaata tgaaatgtca       120
     aaatagttta acatttgctt tgctttggct tttggaagca cagcaacatt aacagtacta       180
     cagccttccg aaagcaaaaa gcattgcttt cgtgttgctg tcagcactct gaaagcaact       240
     ttaacattca aaaatatctc ctgatcgaaa tggctgccag aaataaaaaa ttttcttttg       300
     tctggaaata ctttgtaaat acaagtgacc ctgacaaagc catttgcaca ttgtgcaaag       360
     ttttgatgaa gaatgaccgg acttacaatt taaaaagcca cctatggaaa gtccacggaa       420
     tcgaagatgg aggggtaaaa aagccgtatt ccacaaaaac ccagtcgata caggtaaaat       480
     tgaataaaaa tcaattaatt cggtcgtata tcggattagt aacggaggac aatattccat       540
     ttaatgtatt aaattcaagt aatttaagaa atattattga tcccatctgc tgtggatttc       600
     aagaaaaaac aggcaaacgc tttgtgctta acgcaagtaa tgttcgagcg gcggtatgca       660
     aagtggctga taatataaga aatgatatga aattggagtt atcccaacgg ctcctatccc       720
     tcaaaattga tagcggaaca aggctctgcc gtaacatatt tggtatcagt gctcaattca       780
     ttaaagatga ccaagttaaa tccattattt tggggatggt tgagctgaaa ggagttgggt       840
     ctagtaactc caaaaatttt gctttggaaa tagtacaaac attagaaaaa tatgacatta       900
     aattatcccg gattttaaca attacttcag ataacggtgc gaacatgatt aaggcaacta       960
     aaattttatc aacagtatgt tccaatgaag aaagccatga agaagaatta aatgacgatt      1020
     atttaaacaa tattaccaat ttcgaaagcg agcccaacat aacggttgga aatatccaga      1080
     tttgccggtg cgctgcacat actgctcagc tatgtgcctt ggacgttacc aaggatgcgg      1140
     aaattaagcg gtttttacta agctgccgaa atctaactaa atttattaga aaagcatcaa      1200
     atggattcag ggacgctttt gaattaagga aagctaaggt tcctcaactg gactgttcca      1260
     ctagatgggg atcaacttat aatatgatca aatacgtact ggatgcaaaa gatgccttaa      1320
     ttgcaataga gtctgtaaaa aacaaaagct cggatgaaaa cttcgacatc aatgacaatc      1380
     tttgggaatt catggaggcc tattgcgaag ttttcgcacc tcttcaagaa accataataa      1440
     agtttcagtc agagagccta cattatggga atttttatgc ccagtggctt aaatgtaaaa      1500
     tggttgtcgg agcaattgtc agtagaaatt ctacaaaaat tgttgtacag aaaattggaa      1560
     ctgctttgtt ggaaagtatt gaaaaacgat caaaaaatct gctaaacaat gagggcctaa      1620
     atgcgtgcct atttttggat ccaagatttc accacatcat tactgggcaa aaaagagatg      1680
     atgcagtagc ttaccttgtg aatctttgga aaaagttaca aatagagtct cctattcacc      1740
     taccggttgg acctgctagc agttcttctg aaacaaatgc gtccatttca gatgaagcag      1800
     aggaaatgtt agatgcattc ctgacaaacc aaatcaagtg cattgaaaat ttcaataata      1860
     cagatgttaa cacgaaaatt caaaatcttc accttccctt tataaggagt aataataata      1920
     ttttgaaatt ttggtctgag cgtaaacatt ccgaaccaga gctttatttt ctaagcaata      1980
     tttgtttcgc gataccacca acgcaggtaa cgaaaaattt tattatttaa tttaaagtac      2040
     caatattaaa tacttttttt caggttacaa tagaaagagc tttttcgcag ttaaagctca      2100
     tattaaccga aaatcgcaac cggctatctt ctgaagcatt agaaaacata ttaattgtaa      2160
     aattgaattc agattatttg gacaaagcaa tttgcgaact cgatatgttt agcgacgaaa      2220
     tttaagttaa cacataacaa aataaacaaa acacaaaatg tacacttgaa aaattttcat      2280
     ttacatttat gtatattatg tacattttca gttttgttta ttttgctttc aaacagggac      2340
     cgaaaataat cattattttt attcccttaa acaaaaaatc ggccacttat aatagcaatg      2400
     tccaattctt agcggaagga aaaatataca ttaaaacttt tggcctgata gagctaaaaa      2460
     agtcgcacac atcccaaaac ttgtgcacac aaattaagtc taacggtcgt aacatgatca      2520
     aggctccagc caaggatgag gatgatcacg acgaggaaga tgttgctgac gattttgaag      2580
     atgaagggct gttaatgaat atccatatat tcatgccatt cagtcagttc acttcaactc      2640
     gccgtaaagg acttttttca acgcctcgaa tcggatgagt ttatttccct ttttgtatca      2700
     gctggccaag gtcgtccatt cagttcccgc tacgcaagtg agcgtggaaa gatctttttc      2760
     ggccctcaaa atggtactga ccgatcaaag gtgtaacctt gctaatgagg ctttatcgaa      2820
     attattattc gtaaaattaa ataacaaata aatatgtttg gaggttcttt aaataaatat      2880
     gtttatggag gtagctttga taattcttta aatcagattg gcgaaaagtc ttacaggacg      2940
     gccgcgaggc tgtgatgagt tttattttga ttggaataaa ataaaaatca taggataagc      3000
     cattttttaa aagtggttaa aataatttgt taagaatcgt gggggtagtt ttaataacgt      3060
     cttaaacgga tgtgaaatca gattggagaa aagtcttaca ggacggccgc gaggatctga      3120
     tgagttttat tttgagcaaa aaaaaataaa aatcatcagt aatcattatt tttgagtctt      3180
     atttttgttg atcaaaaata attaatatgc tctaagaaaa atataaaaat tgaattttaa      3240
     tcattacaaa gtaattttta ttatttaact tataatgatt acggtccctg ctttcaaatg      3300
     taaattgctg ctttcaaatg taaactgctg ctttccaatg taaaatgctg ctataacatt      3360
     gcttccgacg aaattttaac agtcgactgt ggctgtcgtt gattttgctt cggctttgct      3420
     tccgacttcc aaaaactttc atagcagtag cacagtaaaa gcaaaacata cgaagcattc      3480
     acagcatttt caaaccctg                                                   3499
//
ID   hAT-18_LMi  repbase;    DNA;    INV; 3145 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3145
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3045-3045 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(414..635,639..812,811..1440,1253..1738,
FT                 1675..2067,2045..2521)
FT                 /product="hAT-18_LMi_1p"
FT                 /translation="MNKVDSSERPFIYYGREARNQAVRCTSTKRFLDVSTR
FT                 RKEEETFCYTWFCKKSWLTVSEEKQKIVLFLLCVVWWRIVDNSCKDLKHLS
FT                 ERIKKHEESGLHLENAVNIKCLAQLTLLLRLIRRIKCQFRNIMNTSCEEQT
FT                 RTKQDSRVLNVLWSSELALRAHNEKQESANRGNFLDLLSLLGNLDSVLDDH
FT                 LSSSSNSVCKYTSHTIQNELLDCMYQVYIEELIKEINDAAFVSVQADETTD
FT                 ITCRSQFVIILRYIKGKKPVERFLSFENVNDRQHMDLVRFQKESGTFQCSR
FT                 KTHCSGIRWRPSNERQSQWCADTDAEHFPTCQVRSLLCAPNEFGSSECLQG
FT                 FKKSLEPFNVQEKLIAQAYDGAPVMSGSHSGVQTLMQSTFPHAKYVHCYAH
FT                 QMNLVLQNACSKSIKSIRLFFANIAGFTTFFSSSPKRSDLLQTVCNKRIPS
FT                 VSSTRWNFQSRIVNTVKENKLHLLECFEKIEEEDSWDDVTIREAFALRNLL
FT                 HIHTFCSSCYNKRSICLKKFTSHPHFLFLLIFYDIMKHIDIFYNTVQMQSA
FT                 NAVTISNALHHFECAVSEIRENIQRFGVSDDECIAPPRKRSKCSSELNLTA
FT                 DAKEVCDIMTNQLKGRFQNSHVFSSFESLIQKSISFFSKKVFPSFREHFPA
FT                 TLVNTFSLNYSPFICHDKLKNELSVIYRNDTFRGITSVCELFTFFVEHSFE
FT                 ESFTEVHKTLQIALTTPISTAEAERSFSTLKRIKTFLRNSMSQERLNSLAV
FT                 CSIHKEEISDIPNFNNRVIDSLPVRRTDVHIYCINNLSEHRPH"
XX
SQ   Sequence 3145 BP; 979 A; 661 C; 618 G; 887 T; 0 other;
     caggggcggc tcattctaaa gggccccacc agaaaatttg tgatatactt tcagtattat        60
     atcaaacagt tggagtgtga catgatcccc tcgacatcct aactcaattt acaatgacat       120
     caaatggttt cgcttgcctc tcaccgcata gcatgtgccc ggtggacccc ctctcttcgc       180
     cagcggcggc tggcccttac tgcccctgca gtcgcagtga cgtcacagag ctgttttcct       240
     tcccctcctc gcccctctag tgctgcttgg gtgaagcggc tgtgtcgcgc tcccactccc       300
     acccctcgcg cacctgtccg caggttcgca gtttggggct ggcgaccctg ggcccttagc       360
     acctacgtca aacgtattct ggagctgtgt cgttgcaact tgagtgttcg taaatgaata       420
     aagtagactc ttcagaacgc cctttcattt attatggaag agaagctaga aatcaagcgg       480
     ttaggtgcac atcaaccaaa agatttcttg atgtctcaac tcgacggaaa gaagaagaaa       540
     ctttctgcta tacatggttc tgcaaaaagt cttggctaac tgtgagtgaa gagaaacaaa       600
     aaattgtttt gtttctactg tgtgttgttt ggtggtgaag gattgtggac aacagctgca       660
     aggatctaaa gcatttaagt gaacgaatta agaaacacga ggaaagtgga cttcatttag       720
     aaaatgctgt aaatataaaa tgtttggcac aattaacatt actgctcaga ttgattcggc       780
     gtataaaatg tcaattcaga aacataatga actagttgcg aagaacagac acgtactaaa       840
     caggatagta gagtgcttaa tgttttgtgg agctctgagt tagcactaag agctcacaat       900
     gaaaaacaag agtcagcaaa ccgtggcaat ttcttagact tgttatctct tttgggaaat       960
     cttgacagtg tattagatga tcacttaagc agctctagta attccgtgtg taaatatacg      1020
     tcacacacaa tacaaaatga gcttctggac tgtatgtatc aagtttacat cgaagaactg      1080
     attaaagaga ttaacgatgc cgctttcgtt tctgtgcagg ctgacgaaac aacagatatt      1140
     acgtgcagaa gtcaatttgt cattatactg cggtatatta aggggaagaa acctgttgaa      1200
     agatttcttt cctttgaaaa cgttaatgat aggcagcata tggacttagt gaggtttcaa      1260
     aaagagtctg gaacctttca atgttcaaga aaaactcatt gctcaggcat acgatggcgc      1320
     cccagtaatg agcggcagtc acagtggtgt gcagacactg atgcagagca ctttcccaca      1380
     tgccaagtac gttcactgct atgcgcacca aatgaatttg gttcttcaga atgcttgcag      1440
     taaaagcata aagtcgataa ggttgttctt cgcaaatatt gctggtttta caacgttttt      1500
     ttcttcatct cccaagcgaa gtgatttgtt acagacagtc tgcaacaaga gaattccttc      1560
     agtctcttca actagatgga acttccagtc ccgcatcgta aatactgtca aagaaaacaa      1620
     attgcactta ttggaatgtt ttgaaaagat tgaggaagag gattcctggg atgatgttac      1680
     aataagagaa gcatttgcct taagaaattt acttcacatc cacacttttt gttcctccta      1740
     attttttatg atatcatgaa acacattgat attttctata acacagttca gatgcagagt      1800
     gcaaatgccg ttaccatatc caatgcatta catcattttg agtgtgctgt atctgaaata      1860
     cgagagaaca ttcaacggtt tggagtttct gatgatgagt gtattgctcc tccaagaaaa      1920
     cgttccaaat gtagcagtga acttaatctg acagcagatg ccaaagaagt gtgtgacatt      1980
     atgaccaacc aactgaaagg aagatttcaa aactctcatg tatttagcag cttcgaatca      2040
     ttgatccaaa aaagtatttc cttcttttag agaacatttc ccagccactt tggtcaatac      2100
     tttttcatta aactacagtc cgtttatttg ccacgataaa ctgaaaaatg aactgtcagt      2160
     gatttatcgc aatgatacat ttagaggcat tacatcggtt tgtgagctgt ttactttctt      2220
     tgtggaacat tcctttgaag aatcgttcac tgaagtgcac aaaacattac aaattgcgct      2280
     aactacacca atttcaacag cagaagcaga gcgcagtttc agcaccttaa aaagaatcaa      2340
     aaccttcctc aggaacagta tgagtcagga aaggctgaac tcactggctg tttgttccat      2400
     tcacaaggag gaaatcagtg atattccaaa cttcaacaac agagtaattg acagtttgcc      2460
     agtcagaaga acagacgtgc acatttactg tataaataac ctgtcagaac acagacctca      2520
     ttagttaacg tgctagttag gtaaaataca catgaaactg ctcctagcca aggtttttcc      2580
     cagagttttt accttggcct aaggcaaaag ccaggagggt ccctgttgtc tctctggtgc      2640
     attcccaatg gggaagaagt cacatacgtc ctcccacagt tcatttttat tttgacatca      2700
     caatcagtac acagaagcac actacaataa gtacgaactt cagcatgaga agagctggtg      2760
     aacttcggtt cgaatccaaa cacctccaag ccccaagttc ttcaataaat tggtcaccac      2820
     agcataaact cagacaccca caaagtacac ggaaaaccag cggagctggt ggaccagacc      2880
     aactacaata ttacacacac ataacccccc cccaaaaaat aaatagtaat aaaataaaat      2940
     gtttatgcac atttgtataa atttttatta gctacagtgt ttctggatta tattaattac      3000
     tgcataatta gatatttaat atctttcgaa tgtgtttaaa tgatgttata taaatggagt      3060
     ttataagaac actcagactg attccattat actgggtact aactttttgt ctggccccac      3120
     caacaaacag cacgagccgc cactg                                            3145
//
ID   hAT-19_DTa  repbase;    DNA;    INV; 2706 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-19_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2706
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(405..1670,1720..2124)
FT                 /product="hAT-19_DTa_1p"
FT                 /translation="MSLKRKISALWDHFEDVREQKVKCTICKATLSSGSMS
FT                 NLGRHLKAKHPSYSAPVERQSTLTSSDSGGFAAESQTKIMDFIQRPLPARK
FT                 CEQLDRQLVRMVAKGNHALRIVEEPEFKKFVEDVSHCPGYKMPTRKTLSNV
FT                 LMTNAHAELAASAVCLTTDGWTSLTNQSYKAVIAHYITKESTKLHSHMLAC
FT                 ESFNERHTSINLCSYPNKIATDWCVQGKIAAITSDNAANIVGAVKLGNWPH
FT                 LPCFAHTLNLIVQNGLKKISLTRKKVKAIVEYFNRSTVGINKLKDTQKQLN
FT                 MTDLKLVQDVPTRWNSTYKMFERFVLLKEAVIVAVSVLRPDLVLAHEDWQI
FT                 IEEVLPVLKPFYQITIEISSERNVTLSRVIILSNLLRINMRNISSENSFVA
FT                 SVVEEFQAKWPIDLRTWKKMNFMRKVQFISCRVNKGKSFNANVESEKNENL
FT                 MEKKTGSNDLWEEYYNFFKEKIPNNKEAAIKKVTKYLEEECLNRKEDPLIW
FT                 WESKKDVYSRLYCLALQRLCLLATSVPCERLFSAAREIFTKRRSLLNTNKV
FT                 ESLMFLHNNM"
XX
SQ   Sequence 2706 BP; 878 A; 516 C; 524 G; 788 T; 0 other;
     tagtgttggg ttgtgagtga acaaaagagt cgctcacctc agtgagtgag tgaacaagtt        60
     cacaactatt gatcactgct cactcacttg ctcacttgct cacttactca cttgctcact       120
     cacatgttca gttgctcact tgctcacact tgttcagctg tttacttgct cactaactcc       180
     gttcagttca gttctattct catttataag tccacaagtt cgtagcacga tcataatttt       240
     tttttactag ttctttttcc cactgcaggg aacagtggtt caatggttct tctgcttcgc       300
     tctctaattt tgttttttca ctggtttact tcaatagtgg caaccttgct tacttattat       360
     tgtgtggcaa ctcgaaattg tagcttccca acgtttgcaa aaatatgtcg ctgaaaagga       420
     aaataagtgc cctttgggat cattttgagg atgtcagaga gcaaaaagta aagtgcacaa       480
     tatgcaaagc cacgctgtcg tctggatcta tgagcaatct tggccgacac ttaaaggcaa       540
     aacatcctag ctacagtgct cccgtcgaac gccaaagtac gctcacttca agtgactcag       600
     gtggttttgc agctgaatcg cagactaaaa tcatggattt catccaacga cccctaccgg       660
     ctcgtaaatg tgagcagctc gatcgacagt tagttcgaat ggtggcgaaa ggaaatcatg       720
     ccctaagaat agtggaggag cccgaattca agaaatttgt cgaggatgtg tcccattgcc       780
     ctggatacaa gatgccgact agaaagactc tgtccaacgt actaatgaca aatgcacatg       840
     ctgagttagc tgcctctgcc gtatgtttga caaccgatgg atggacttcc ttgaccaatc       900
     aaagctataa ggcggtaata gctcattaca tcaccaagga atccaccaaa ttacattcgc       960
     atatgttggc ttgtgaatct tttaatgaga ggcatacaag cataaatctt tgctcttacc      1020
     caaacaaaat agcaactgat tggtgtgtgc aaggcaaaat tgccgcaatt acgtccgata      1080
     atgctgctaa tatcgtgggc gcagttaagc ttggaaactg gcctcatttg ccctgtttcg      1140
     cgcatacact caatttaatt gtgcagaatg gactgaaaaa gatctcacta acgcgcaaga      1200
     aagtgaaagc tatcgttgaa tatttcaatc gcagcacagt tggcataaat aaattaaagg      1260
     atacccaaaa gcaactgaat atgacggact tgaagttggt gcaggatgta ccaactagat      1320
     ggaactccac gtataaaatg ttcgagcgtt tcgtattatt aaaagaggcc gttattgttg      1380
     cagtgtcagt acttcgacca gatttggtcc tagcccacga ggactggcaa attattgaag      1440
     aagtattacc ggtgctcaaa ccattttatc aaataaccat agaaatatct tccgaaagaa      1500
     atgtaactct ttcaagggtc ataattctta gcaacctttt acgtattaac atgagaaaca      1560
     tatcttccga aaactctttc gttgcatcgg ttgtcgagga attccaagcg aaatggccaa      1620
     tagatttaag gacttggaag aaaatgaact ttatgcggaa agtacaattc tgaatcctcg      1680
     ctttaaagga cggttttttc aatcaagaca gtgttttgaa tcagctgtag agtcaataaa      1740
     ggcaaaagtt tcaatgcaaa tgtcgaatca gaaaaaaatg agaatcttat ggagaagaaa      1800
     acaggttcaa atgacctttg ggaggagtat tacaactttt ttaaagaaaa aataccgaac      1860
     aacaaggaag ccgccattaa aaaagtgaca aaatatcttg aagaggaatg cctgaacaga      1920
     aaagaggatc ccttgatctg gtgggagtca aagaaagatg tttattctcg attatattgc      1980
     ttagcactac aaagattgtg tttgctagca acatctgttc cttgtgaaag gcttttttca      2040
     gcagcacgcg aaatttttac aaaacgacga tctcttttaa atacaaacaa agtggaaagt      2100
     ctaatgttcc ttcacaataa catgtaacgg taagattttt taattgttgt ttcttttagt      2160
     caatctaaaa aaatatggtt tcaggtttaa catcatttgc tgactagtgt gaaacgcaaa      2220
     gcaattaatc aacaaacagt aatggaaact acttatgaaa acattacttt ttttgttaag      2280
     ttttagtgcc ttcatatgaa agaagaagtg ccttgttttc gaaataaaat atgatttcaa      2340
     aaagttcacc tgaatttttt tttagtgaca ctaacctaaa ttttgactaa ctaactgtat      2400
     ttatttaaaa aagtaaaaaa ttagtaagca actgaagaat ttacaatttt caaatttgaa      2460
     caagtgagta actgaacatg tcagcaactg aataagtgag taactcactg aacaactgag      2520
     ttactcactg aacaagtgag ttactcactg aacaagtgag ttactcactg aacaagtgag      2580
     ttactcactg aacaagtgag ttactcactg aacaagtgag tgagccaagt tagtgagttg      2640
     attcattcac ttaaaagtga gcaactgatc ttgttcacta aggtgaacag tgtttaccca      2700
     acacta                                                                 2706
//
ID   hAT-19_LMi  repbase;    DNA;    INV; 3054 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3054
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3046-3046 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(909..1238,1210..1617,1607..2218,2233..2625)
FT                 /product="hAT-19_LMi_1p"
FT                 /translation="MEAFSNLNVLSVSISRHEKTLGHIRASLELLTFGRTR
FT                 IDHQLNQQLRTSVLLHNEAVTNNRGILKRLIDCVCFLANQELPFRGHNESA
FT                 DSLNRGNYVELVNIISKYDQTSISLANMIRLPNHMKESKVFRGTSPTIQNE
FT                 LIICISKFLLNALKEETANSQFVSILLDETTDSINKSQLSTCLRYVNDRGE
FT                 AREVFTGFSDVSADRSAEALFRHVVQTVEEFNLESKLVGQTYDGAAVMAGQ
FT                 MTGLQLGCSKHVQEKYPRATFTHCYSHVLNLVLQQSASANKDCRVFFKTMS
FT                 GLSAFFSTSPKRTHALKQFVEKKIPKVAPTRWNFCSRLVNTVQEMRNELIM
FT                 FFEDITENCDGWDAVCVAQAYGFISFLSEYKNCFLLEVFSRIFCHTDILFD
FT                 TLQKKTLDIAYSNKEIEKFQLLLVSQRNDFDALWEKMTYNTEIICPPRELV
FT                 LTKTKFKIIDNISNQTSGRFGSLIKLQFMTLLSEEKYSSHSRNFPDGLLDK
FT                 LNDSPYSELFDFVKLKNELIAFYSSTEFENKPVHELVPYMNTNNIHKIMGE
FT                 TYKLASLILSIPVSTATVKRSFSALRRIQLTQLA"
XX
SQ   Sequence 3054 BP; 925 A; 649 C; 607 G; 873 T; 0 other;
     caggggcgtc gtctccatgc atgcgatgca tgcggcgcat gcctatcagt tacaaccgta        60
     gaagaaaaat tactttctta cagtaagcgc agcaagtgct tccgcactga ctactctgca       120
     tgcggaggaa gagccgcatc aactcgccgc tctcgacccc cacccttgta cactccgtcc       180
     ctcgcccagc gcgtccgctt gctgccgaca ggccgctaca tccgaggcca aacaacaccc       240
     ccaccccgcc tacccccacc ctggcactgc gtggtggcat gctgccgctc caccgcatcg       300
     cctttgcgac ttttacattg tcaggaggat gcgcgcgcac ctgccccgca ccctcctttg       360
     cccggaactg cccaccgtct aagccagggt gcatgcggcg aagccacagc aagccagcta       420
     gcctcgtgcg tgagacaggt agttggaacg gatcgacgcg caactgagct ttattctgtg       480
     ttacgtcagt ggttacgatt ctgctcccag acttggcgtt gcttcagttg tatgattctc       540
     ttatattttg tttattttga tttatttttt aacggtctta gtactgaatg aagcctgtcg       600
     ataggactca gtgaacttcc tttctttttc agatttcgaa atgactgaaa attctgtaat       660
     acaggaatta attagagaac catttagttc aagatcattt ttagtaaaaa aggaaatagt       720
     tgttaaagga agaccttgcc ctgctttgac tggactttct actaggcata aagataagaa       780
     gcaagaatac atacggcatt ttcaaacagt ataagaaaac tagttggtta agtggttgtg       840
     acgttaagca aaggttgttc tgctggcctt gtctcttgta tggtgctgat agaacaagct       900
     tgtggactat ggaagcgttc agtaatctga atgtgttgtc agtgtcaatt tcaagacacg       960
     aaaaaaccct tggacacatt agagcaagtc tagagctttt aacatttggt cgaacaagaa      1020
     tagatcatca gttgaatcaa caactgagaa cttctgtgct acttcacaac gaggctgtaa      1080
     caaacaacag aggaatttta aagcggctta tagactgtgt atgtttctta gccaatcaag      1140
     agctgccatt cagaggtcat aatgaatcgg ctgattctct aaacagaggg aattacgttg      1200
     aactggtaaa tatcattagc aaatatgatc agacttccta accacatgaa agaaagtaaa      1260
     gttttccgtg gaacgtcccc tactattcaa aatgaactta taatatgtat ttcaaaattt      1320
     cttcttaatg cactgaaaga agaaacagcc aattctcaat ttgtttccat tctactagat      1380
     gaaacgacag attccatcaa taagtctcag ttatctacat gcctgagata tgtaaatgat      1440
     agaggagagg cccgggaagt gttcacaggt ttttctgatg taagtgcaga tcgctctgct      1500
     gaagctttgt tcagacatgt tgtccaaact gtagaagaat ttaatttgga atcaaaatta      1560
     gttggtcaga cttacgacgg agcggcagtt atggcaggcc aaatgactgg gctgcagtaa      1620
     acacgtacag gaaaagtatc cacgggctac attcactcat tgctatagcc acgtcttaaa      1680
     tttagtttta cagcagtctg ctagtgctaa taaggactgc cgtgtgtttt ttaagacaat      1740
     gtctgggttg tctgcctttt tttccacttc tccaaaaaga actcatgcat tgaaacaatt      1800
     cgtggaaaag aagattccta aagtcgcacc tacacggtgg aacttttgtt caagacttgt      1860
     taacacagtt caagaaatga gaaatgagtt aattatgttt ttcgaagaca taacggagaa      1920
     ctgtgatggt tgggatgctg tgtgtgtagc acaggcttat ggattcattt catttctgtc      1980
     tgagtacaag aactgctttc ttcttgaggt tttctcaagg atattttgtc acacagatat      2040
     actttttgat acactacaaa agaagacact agatatagca tattctaata aagagatcga      2100
     aaagtttcag cttttgcttg tttcgcagag aaatgatttt gatgcactat gggaaaaaat      2160
     gacatacaac acagaaataa tttgtccacc aagagaactt gtattgacaa aaacgaagta      2220
     agacgattgt aatttaagat tatagacaac atatccaatc aaacatccgg caggtttggg      2280
     tctcttatca agttgcagtt catgactctt ctaagcgaag agaaatattc gtctcacagc      2340
     cgaaattttc cagacggttt actagataaa cttaacgaca gtccgtattc tgaactgttc      2400
     gattttgtaa agttaaaaaa tgagttgatc gcattctatt catcaacaga atttgaaaac      2460
     aagcctgtgc atgaactggt accatatatg aacaccaaca atattcacaa aattatgggc      2520
     gaaacctaca aactggcctc cttaatattg tcaatacctg tttcaactgc aacagtgaaa      2580
     cgttcttttt cggcgttaag aagaatacag cttacccaac ttgcgtgaca gttaccaccc      2640
     aattctggcc aacaactgcc gcgttgtcaa gtgccagatg gagtgaatac acttgatggg      2700
     aatcgtatta acacaaaact gactaagctt gcttgcaaac aaaccttccc agttgataat      2760
     ttaatgaaat tctctgtgta ttacatgaac agcatttcct tactccagta agcaccagct      2820
     actcacacca ttgtcacctc tgaatacatc atcgactata ttccatggtg atggctgtgc      2880
     aatctactct agtacagttt aattattact tatgtttgaa taactgaaaa tagctaatat      2940
     gataacaaaa taataataat aataagatag caattaagct tcattgatgt ttaactcagt      3000
     gagttaccac cgctaagcag catgcccttg acccaaatcc agtatacgcc cctg            3054
//
ID   hAT-1N1_PBa repbase;    DNA;    INV; 961 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-1N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-961
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 647-647 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 961 BP; 293 A; 184 C; 163 G; 321 T; 0 other;
     caggggtcgg caaaacgctg aaattgggca cgggcgcccg cgagcgcccg cgagtgcccg        60
     cctgttgtgc acatctcagg agcgtatcta atatttttag taccttggga taaagttccg       120
     catttccaaa tgaaacttaa tttatggatc aatcaatttc aatctcgaca gttgttgcat       180
     ttttcaaatt tattatctgt tgccatgcac attcaagata agcaatagaa atgaagaata       240
     tataaattca cttcaattat tacataatga attcgattgt cggtttaggg aaatgcatgt       300
     tttagaagaa gacttactta tttttatgac accttttact gttgatatta atattgttcc       360
     cgcagatata caattagaat taatagattt aaaatgtgac actgctctta aaaatcgttt       420
     ttatacaatg actgacatcg tacaatttta ttcatatata tctcaagaac gttttcctcg       480
     actacatgct tgtgctgcaa aaataatgag tatgttcggt tctacatatt catgtgaaca       540
     attattttct attatgaaat taaataaatc gcgattacgc gaacagttaa cagattcaca       600
     tttgaatttt gcaataattc gtttaagttg ccaaaacgat aacacctgat atatcgtata       660
     taatatcgga aaactatgaa tcaaatacta attaaatgtt ataagagttg tttatttaat       720
     attattgtaa gaattgttta tttaaaatat agatagttat taatttatgc taattctggg       780
     tctgaatttg tgcaacacaa tattttttta ctccttgaac agcacgttca atgaacagac       840
     gttcctgcta tcccctctcc tcactttatt gcgcctagcc gcctaacgct agccccagcg       900
     cgctcgactg ttgcccgcgg gcattgggcg cccgcgagca gtgcccactt gccgacccct       960
     g                                                                       961
//
ID   hAT-1N2_PBa repbase;    DNA;    INV; 1355 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-1N2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1355
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 648-648 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1355 BP; 492 A; 211 C; 196 G; 456 T; 0 other;
     cagaggtcgg caaaacgctg aaattgggca cgggcgcccg cgagtgcccg cctgttgtgc        60
     acatctcagg agcgtatcta atattttttg taccttggga taaagtttcg catttcacac       120
     ttacaaaaat agcgttgcat gtatatatga acgatagtgc agtcttaaat tactagtact       180
     cgaatctttg taatatcata aaattttttt ataacagttt agctaaaccg tttaaagatg       240
     aaatatgcaa aaatatgttg taatatatag gactcaaaat gcataagttc ttataaattc       300
     aacttatatt tagttaattt ttttattagt caaataaaga aatgtgccct agcatgtttt       360
     gattgtccta ataataagca ttcattatag gaaaatttta attaaaatgc ttatctctat       420
     ttttaaatat tgtaagttgt caaaatttgt gctttagcat ataatttatt aaaaattgtg       480
     taatataatt attacattta aatatgttta acgaaaattt aaatataaca aagaaataaa       540
     acaataatat aaacaataac aatgtattaa aatataaact tataatacaa tcataaaatt       600
     atgaatacat atatcacgtt taacagaaat tagcgcttta aaattatatt tttaaatcca       660
     gaagaatagt tctttttccg cgaagaaaac ttccaacagt ttcaaaataa acatctgcta       720
     aacatcaatc tgttaaacgc tcaaaataaa agaaaaacag taactaagca acggtataat       780
     caaattttgc tcttgtctag aacagtcaga cacatttgcg atcttgtaat ttaacgtttg       840
     tgatggataa tcaaagtaat aataataagt ataatgagta tagtataatg agtatgtata       900
     atgagtatat tcggttctac atattcatat gaacaattat tttctattat gaaattaaat       960
     aaatcgcgat tacgcgaaca gttaacagat tcacatttga atgcaataat tcgtttaagt      1020
     tgtgccaaaa caataacacc tgatatatcg tatataatat cgaaaaacta tgaatcaaat      1080
     actaattaaa tgttataaga attgtttatt taatattgtt gtaagaaatg tttatttaaa      1140
     atatagatag ttattatttt atgctaattc tgggtctgaa tttgtgcgac acaatatctt      1200
     ttgactcctt gaacaacacg ttcaacgaac agacgttcct gctatcccct ctccttcctt      1260
     tattgcgcct agcggcctaa cgctagccct agcgcgctca actgttgccc gcgggcattg      1320
     ggcgcccgcg agcagtgccc acttgccgac ccctg                                 1355
//
ID   hAT-1N_DP   repbase;    DNA;    INV; 557 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   hAT-1N_DP is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-1N_DP; hAT-1_DP; nonautonomous DNA transposon.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-557
RA   Kapitonov V.V. and Jurka J.;
RT   "hAT-1N_DP, a family of nonautonomous DNA transposons from
RT   Drosophila pseudoobscura.";
RL   Repbase Reports 5(2), 43-43 (2005).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 557 BP; 154 A; 100 C; 113 G; 188 T; 2 other;
     tagtgttgtg ttgctcatga gtgagtgaac aaaaaagagt tgttcactta agtgagcaac        60
     tgaacatgtt ccttccaagc tgttcttttt tgttcacttg ttctttgttg ttcacttgtt       120
     cttttttgct cacttgttct ttgttgttca cttgttcatt tttgctcact tgttctctac       180
     tcactttttg cgcaattttg ctcctcaaag ggcattttgc gatctggcag ttgttgctca       240
     tatttgcgtt tacttcacac tttttgtatt accggcaaag ctgtttactc ttttgaaaaa       300
     ttcagtatgt cgctaattcg aaagtatagt gaaatttgga atcatctgtg catgaatagt       360
     gaacaactga gagagcaagt cagcaactga gcaagtgagc aactgagcaa gtgagcaagt       420
     gagcaactga gcaagtgarc aagtgagtaa ctgagcaatc taagwgagca agtgagcaat       480
     atgagtgagt tgactcactt actaaaaaag aacaagtgaa catgttcacc aaaatgagca       540
     atgtttaccc aacacta                                                      557
//
ID   hAT-1N_DW   repbase;    DNA;    INV; 909 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   04-APR-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   hAT-like DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-1N_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-909
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1742-1742 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 909 BP; 326 A; 140 C; 137 G; 306 T; 0 other;
     tagagagctg catgaatgga agcaaagtca aagtcaaatg aatccattcg aattgaattc        60
     aaataaatga gtgacaacta cacaatgaaa tgaatgagtg tgagtttgta cttgtcatat       120
     ctcgcaaaat acgtaactct gtttaatgaa aggcaatgaa ttgagtgtca aaacatcgaa       180
     ttgtactaag gcactcgaat cattagaatt attcgaattg actcattttt attgggatgt       240
     ttaaaagcaa caaaaactaa ttattttatc aaaaatgtat ggaaaataat ggcgaaatgg       300
     gggctattaa aattaaaata tgctatacac caaaaactta aggacacagt tttggatttg       360
     acaatttggg acaaattttg taaaatctat tttttctaaa ttagattcct agttgccacg       420
     aaccgtgaaa acataaataa ggctttctaa tatattataa aaaaaaaatt atattcttta       480
     atccatcata tacacaatgg atctactttt taatatactt cactatttgg aaaaaaaatt       540
     cttctctatc tctgtagggg gtttgaaccc gataacaaca gtattgtagt ctgagtaggt       600
     ccccactgag ccactaacca ctctagtttt gtagtacagt aatcacatat agttaaaaaa       660
     tatacaatac aaataaatac taaatactaa aatcagaatt ggaattcgaa tgcattcgaa       720
     tcatagcaac tcattgactc actttctaac tcattcaatt cgttttgttt cgtttgaatg       780
     ttgtgcgact gatttttacg tcgcacactc atttagttga agtcgatttt caaagtcatt       840
     caattcattt atttggtttt gaatgttgtt aactcgaatt gatttttcta tcattcatgc       900
     agctctcta                                                               909
//
ID   hAT-1_DAn   repbase;    DNA;    INV; 3052 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   hAT DNA transposon from fruit flies.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3052
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 288-288 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 19-bp TIRs.
XX
SQ   Sequence 3052 BP; 1032 A; 510 C; 588 G; 922 T; 0 other;
     tagaccagta gttcccaaag tggtccaggt ggacccccag gggtccacgg gagactcgac        60
     gggggtctac gttgggtcta acaaaaaatg ggggtctaca ctttgtaagc gggggtgaat       120
     gaaaattaat ttggtttcga tagtgaagaa ctaagatatt ggcttgactt ctatcactat       180
     aggcagataa tattttgaga agctcagcga ctgttacttg taaaaccctg taaaattgta       240
     aaaatttgtt ccatattcag tacaacgcgt cgagacttgt cgtcgacgcg ccgctgccgg       300
     caaccgtccc gtccgcaata cttgttcaaa cgtgtagagg tgcagaaaac atcgatggaa       360
     acatcgatac ctcgatgttt tggaaaaatg aaaaacatcg atgtatttta aaaaacatcg       420
     agaagctcag caagttctgc acctctacaa acgtgcaaat gaatttgttt ataaatacga       480
     atgtcaagga gaaacgtttc tcatttccga aatgtcataa ggaaatctga atcgatatta       540
     gtgccataat ttgtttccac actttctaaa agtaaagtga atcgatatta cctagtgatt       600
     accagtatcg caaaagtaag tataagtaca tacctgccta tttgttatat gcatacaccg       660
     tgactttttt atcgttttgt tctcgcggga aagtgattca actcatgtaa ataaagaact       720
     ttccctatga aatctcgaga aatggaagta tggaaaaaca gatttttttc gagatttcgg       780
     aagcggcttc ataggaaaag ttgtttatta tcatgagtag tatcaccttc ctgtgggata       840
     aaaacaataa aaaagtaatg ggtatataca ataacgtgtt aatcaaaaag cgtaagacct       900
     gtgttaatca aaagttgagt aataatcaaa cacggcataa tttcaatttt gttggataaa       960
     attttaccct aattttttta ttagtggaat cgattcttct cttgattttc gacaaactac      1020
     tgtaaggttt tgcgttattt aattaacgag ttgtattttt atttcatata ttatttactt      1080
     tacaattttt tttacaaaaa atgttaatta aatggaaaga aatctcttcc aaccaacctt      1140
     actctatatg agataggtat atttataata atatattatt ttatggaagt atataagttc      1200
     agtaggtatt tgattgttcg gttttttatt tattgtttac attgcagatt ggtaattgat      1260
     acgaaacatg accgaatcta agaagaagtg tcgtcagtat agtgttgaat atttaaaatt      1320
     tggttttctt ccatcacagg cagacaaacg gttgcccaca tgcattttat gcaacaaagt      1380
     tttgggcaat gactccatga aaccatcaaa gctggaagag cacctaagaa ggtgtcatcc      1440
     agataaaaaa gataaagatt taaaatattt ccaaacatta aaagaaaaat atgaaaaaag      1500
     acccaccgtg cacagtatgt ttgcttcaac gtctgaaagc aatgatgatg gcttgcgggc      1560
     atcttacaat atctcattac tcatagcaaa atctggaaaa ccgcacacca ttggagaaca      1620
     gttaatttta cctgctgttg aagaggtctt aaaaactgtt ctgcacaaat cttcattaga      1680
     catactcaaa aaaaattccg ttgagtaaca acactgtaca aagacgtatt gatgaaatga      1740
     gctctgatgt tgaaagtttc ttgtgtgatt atctgcaaac aactcatttt tctattcaac      1800
     tggacgagtc aactttacct ggcaacgaag cattattatt ggcatatgtt cgatttgtta      1860
     tgggcgaaga aatccatgaa gagctactat ttgcaagaac tttgaagacg gacactaaag      1920
     gtgaatcaat atttgctgtt ctcagtgatt tttttaaaga aaaatcgatt ccattcacaa      1980
     acgttatttc ggtggcaaca gatggagctc ctgccatggt cgggcgatat cgtgggttta      2040
     taagccatct taaaagaatt ataccagagg taactacaat tcattgtgtt atccaccgac      2100
     aacatctagt agcgaaaaat ttaagtgaca gattgcacca atcgcttcaa tttgtgctta      2160
     atgcagttaa caaaattaga agcaatgcat taaatacgag cttattcaca caattgtgcg      2220
     atgaaaatga tgaagatttc caacgattgc tgttacatac cgaagtacgc tggttgtcga      2280
     aaggtgcatg cttatcaaga ttttattcac ttttcaactc aggacaggaa tttctgggca      2340
     gtaaagatcc tgatttaaaa aaaaacctaa tcaattttaa agcagacgtc gcctatttga      2400
     cagatttgtt tcaaaaattt aatgagctca acttacaatt acaaggggac agccttaatt      2460
     taataacaac aaagagtgta atttcagctt ttattggtaa attgaagttt atgaagggaa      2520
     atattggtcg gcgcgaattt tcacagtttt caaacttatc gcaggtagaa tgccttgatg      2580
     aagatattca gacatacatt caacatttga ttgccctgca tggtgatttt aatactagat      2640
     ttgaagacat tctgtcgatg gaaataccac catggatcat aaatccattt gatgaaacag      2700
     aagtggagaa tgtgatatta caagaggagc tactcgagct cagcactaat gaggagctga      2760
     aagtgacatt taaaaaaggg tatcagaaat tttggttgca ggcagaaata cctaaaaaat      2820
     atcctgtggg caatcacgca aaagcttctc atagcgtttc cctcatcata tctcgtcgaa      2880
     aaaagtttta gtgccgttac aaacttatta acaaaaaaaa ggaacagatt gaatatcaca      2940
     gaacgaggag atttgcggtt atttgttagg gagtgctgaa gggggtccac cggatcctgc      3000
     aaagtcctca aaggggtcca tgacagaaaa aagtttggga accactggtc ta              3052
//
ID   hAT-1_DAzt  repbase;    DNA;    INV; 4185 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.03, Created)
DT   09-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila azteca genome - consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4185
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 587-587 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 8-bp TSDs. 14-bp TIRs.
XX
SQ   Sequence 4185 BP; 1325 A; 754 C; 825 G; 1281 T; 0 other;
     cagagctgta aaccggtccg gaaccgaacc ccgtggaacc ggttctctgc gggttctttg        60
     ctatgtcgaa ccgaaccctg aaccgaaccc aagaaatgtc tcggaaccgc gaaccgaacc       120
     ggttccgttt ttatttaagg gttcggtcca agaaaatata aatatgaaat atgtatccga       180
     tcgtcatgta tggctcatga tgtgaaaaat tggcagggtg ggtgggagca cagacaatat       240
     aaacactaag atatgccgcg ccatacaaaa ttttcagatc gattcctgac tggctggaat       300
     taacaaatat tccaacttga aaaagagaga gacagatata cggagagaca gagagagctt       360
     tagtgacaca cgttctgtac gtgaggctga tctttaactg aatgtgtgta catattgtag       420
     ggctgcttgt gtgtattggt tgttgacgac gccgctggcg aagaaatcac ccattacttt       480
     agcatacgat cgcatcatat acacacaatg catacgtatt tatatgtata tatgtatgta       540
     tgcatgtatg agtcgcaatg aagcgatgtt gtctcgtctc ccttttgagt tatattccgt       600
     ctgcttttaa cggacagctt cttattttat ctatcctcag tcacaagaaa agcgtgtgac       660
     agtgggacag cttataaatt ctatataatt ttttaataat acttagttca tagccatttt       720
     gatttatttc actatagcaa ccaataacta aataaaatat tccaaatcct gattcaatta       780
     caaattacta acattttttt tgtgtttttg gatgcaaccg cccactgtgc acatcattgt       840
     gttttttttt agggttgcca aaaatcgtga aatttacttg ttttgtgtat catttgtatg       900
     gctcaaattt atgtaagaaa aacgtcatat ggtggcaact cttcgaatgg cgccagtgcc       960
     gttgtaacgg gacagcttgc gcatgtagca atctggtttg cattattttt ggcattagag      1020
     aagtgaaggt tgtttgacaa tgagttccat acgagatttt ttcgattata atgatcagac      1080
     taaagtaagc cagtgtaaaa actgtagtgt aaaattagtt ggccgacatg ccactaactt      1140
     aaaaaaacac gttgaacgca agcactctga tgtttacaag cagcttaccg aaagtgaaaa      1200
     aatgaacaaa aaacagcaac agccaccgat cagcaaattt tttgaagact ccaacttaaa      1260
     agtgaagtta tctaaagatg agataacaaa tgcatgtgtt gagctggtca ccaaaaatgg      1320
     gcgcccacta aaaatactgg aagattctgg gtttaaaaaa attttagatc caatatgcaa      1380
     ggcatttcca aagcctttaa caataaatcg gcaaaatatt caaagcctcg ttcaatctaa      1440
     agcaaaatct attcgagaga atattaaaga aattttatcc aatcggtaag tgagttttta      1500
     attaaccaaa atttgtttat gtgcatgtta aaagacaata taaatactaa gatgtgtaac      1560
     actcatacaa ttctgttttg tatgtagtga gagacaaaat acgcgctgtc tcgctcgcac      1620
     gaactcaagt gctcttgcgg atttaaacat agaatgagct tgcgtacaag tgtgcgtacg      1680
     cacagaactg caaatactag agctcgcaaa aaactgttga cactttttcg ttgcctgcaa      1740
     ataagtgtct ttcactcaca caataaaaaa gactcagaca gaaactgtct ttgtcgcgtc      1800
     tggcttagct cgctcgcgct ctgagcgaga cagttttttc tgttttcgtt tcgctcaagt      1860
     cactcactga tcgtttggtt gagttaaatg aagcaaattg tcttttgcgt atgtatgggt      1920
     aaacacacgc gattgttgcg ttctctttta catttatatg catgtacgta tgcatgtatt      1980
     tacatgcaca cgaaggcaaa gaacatttct gttgagtttt ttagtcaaac tgtcttttgc      2040
     tgagagtctt tgggtaagcg aaaatcgtat tactctttac gcgacactca tttgagagcg      2100
     tcacaaaaat gagtcaatgc aaagcgtttg accaaaaccg tttcaaagca aaacaaagag      2160
     agccgctcag agcgagatcg tgtctgcaaa atcttttcgg ttatgttacg aaactgagca      2220
     cataagaaaa aacgatcaac tgtcatttgc gagctctggc aaatacacat gtgtgtgtac      2280
     gtgtcctcta cctcacgcac agagcgtttg tcactagaac gctctctgtc tctctcgtat      2340
     cagtgaagat tgcgcggaac tccacgccga taaaatcgag ctgaaaatgt tgtatggagt      2400
     gacacatctt agggcttata ttaactttgg tatatgtaca tatgtgctat gtgtacatat      2460
     gttgtatagc acatgcaact aaagtattgt tgtttatttt ttaaaatttt ccttaatttt      2520
     ttttagattg gtgtcggtta aagtcgactg cgtaagccgt ttggaacgct ctattgtcgg      2580
     catcaattgt caactatttt atggaggaga acttcaaatt tattcgcttg ctatgaagga      2640
     ggttcacgtg cagcagacca gctcgaacct gacgaacata attaaggagg tccttgacag      2700
     ctataattta tcgctccagc aaatttacac gatcactatc gataatggag caaatatggt      2760
     tagggccagc gagcttctgg atgaacaatg tagggcggat ttggacaacg acgattctaa      2820
     cggcgacgca gcttgtgagt gtgtaccgga aggtacaaat attttggata acgttgatga      2880
     gatagatgag ggaataataa ctgttcggtg tgctgcgcac actttaaacc ttgtcgtcaa      2940
     cgattttttt aaagaagtca aggttgacat ttcgcgaata agatatgttt gtaaaaaatt      3000
     gcgcacggtt acaataatta atcttttacg cctggaaaat ttaaaaaaac catttttaga      3060
     ctgcgccact cgatggaatt ccacgtttca aatgtgcgag cgattactaa ctctaaaaga      3120
     gttctgtgta aagagtaatt taaaagaatt gcaattaaaa tcatctgaat ggaagaccgt      3180
     ggaaaatatt tgcagtttac ttctaccaat ttataaaact tcattgaaat tgcaaaatgc      3240
     taagttgttg tcaagtgact ttttttatgc atggttctcc tgcaaatcta atctaaaaaa      3300
     gactactgca caacattcat caattctggc taaatgtctt gaaaagaggt cagcaatttt      3360
     aaatgtaatt cccattataa ctgcagtata tttagacccc cgctatcaag cgctacttag      3420
     ttgtgaggaa aaaaaggctg caagacaaca tataagccag ttaaacagcc gattgcaatc      3480
     ttttgacgaa agtcttaaca tttcagcagt aaatgattct acttcagatt gtgaggagga      3540
     gacttttatg aaaagcattg tgggaaacca agccacaacg aaaaaattca tttctacctt      3600
     caataaatct tttgaagaaa ttcctcgaat gcatccccat gcagacgttt taaagttttg      3660
     ggaaaattac agccaaactg atttgaaaaa agttgcaatg gttgttttgg cggttccggc      3720
     aactcaaact tctgtagaga gagcattttc ctccctcaaa tttgtgttgt cggacaaaag      3780
     ggcatcaatt gatgaaaacc tcttggagga tattatgcta ataaacttaa attgaatatg      3840
     atttataaat gatttatatg tataaaaaat ggtttgaact aagttaaatt taaatagctt      3900
     taaaatgcaa cgaatgcagt aaaataaaat gatttattat tatttgtttt tttgttatta      3960
     atacctttga aatgcaacgc atgcagtaaa ataaaatgat tctattgtat aaaacatgga      4020
     tgctctttat tttttcattt attttactct acgaacccgg gtttggaacc gaacccgagg      4080
     ttccaaaata ttcaaaaccc ggttatggaa cctctgcgaa ttttcaacat agggttcgga      4140
     acccgaaccg aaccctggcc gttttttcag gggtttgcag ctctg                      4185
//
ID   hAT-1_DBp   repbase;    DNA;    INV; 2487 BP.
XX
AC   .
XX
DT   25-DEC-2011 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2487
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 606-606 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus. ORF corrupted.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1030..1710,1700..2485)
FT                 /product="hAT-1_DBp_1p"
FT                 /translation="MDCTSQLIRSLFGDSHAGKNVSCGRTKTEAIVNQVLS
FT                 VXSIEMVVQDLKKTPFFSIGTDSSNHGNLKMFPLIVQYFDPAEGGIVVKLL
FT                 NIKEKFDEKAQTIANMIKSELDKHVLTEKLVAYGGDNINTNFGGLNRKEGE
FT                 NVLTYLRREINQNIIGIGCSGHVMNNSAHHGIDRFGSFDIECIVMNIFNHF
FT                 SIYTVRTNQLKNFCDFVDVEYRKLLSHSKTRWLTLKNPSRIDXILQIFPAL
FT                 KSFFLSTDHPPIILESFYKDDFAELQLLFISSLMNVFHNRIKSIEREDNSV
FT                 LEVLQIIDEVSETLTERLNSKFIPFAVKQKMQKLTNEGKETECQNFTESML
FT                 VVYERSCEYLLKWSQSLRHLEDFEWLNFKPGKDLRYDSVEKSVAFLASKNI
FT                 EIDDTKLFDQFVNLKKFLNKKEAKDNFFRKXGNEKVCXFFSANSCLESCSE
FT                 ILKIAQYFFAIPCHNANCERAGKELGGNEKTAVSVFSTSVIWSP"
XX
SQ   Sequence 2487 BP; 786 A; 438 C; 493 G; 763 T; 7 other;
     tagggtgacc aggcgtccgt attaatacgg acatgtccgt attttcagct ctgtgtccgt        60
     tagtccgtat ttttttgtaa aatgtccgta tttttcgcgt ttttgacgaa aaaacaggtt       120
     gcacctgcaa tttttccgaa aggagtttct agacttaaac attcgaaagc gcccgcgctc       180
     gcagctgacg tagaggacgc gcaatcagtt tagcacgcgt tatacggtaa aattccctag       240
     aaatatggga cgattgcgtc tggttgttcg gtttgctatg tatgtatgca tactgtcgcg       300
     tacatatgta cattgctttt agcgttgctt tgtgtatttc tgtaacagct gactttttta       360
     ttctcaatca gtcaatctgt aacaaaacaa ccaactcgta agtattctgg atgttttata       420
     aacgctaatw acgattagat tagttgagag ctttattgta aaaaaaaagt gtacttgttg       480
     ttgcagatcc tggaagctca ggtttcaagt aatcgaatgg tctgaatgtt ttcaacgcga       540
     aattcggtaa agsaaaatct aacctgacac ccgacaggga caacaagctt gtgacaatta       600
     acacggcata atgtccgagt cacccgatca caaacgcttg aaaaccacgc cgaattcaac       660
     caaacgcaag tgtacattta cagaggagtt gagacaaaaa cttattctcg tagttttagc       720
     gatgggaaat ctgcatattt tgctcattgc attgtttgtg attgtgaggt gtcagttgca       780
     aatagtggtt tgtatttttt cttttttcat gaaatatcgc ctgattgctc ttgtgaaatt       840
     gtaggaacmc gtgatctgga aaaacacctc gctacaccaa aacattcaaa aaaagtgcaa       900
     gatgcatcta cttcgcgttc cattttggac ttcacttatc aaaaatcagc aacagaggca       960
     catgcagttt gggcggctga aggaactttg gcataccaca ccataaaaca tcatcaaagc      1020
     tacagatcca tggactgcac aagtcaactc attcgctcac tctttggcga ttctcatgca      1080
     ggaaaaaatg tttcttgcgg acgtacaaaa accgaagcta ttgtaaatca ggttctatct      1140
     gttmattcca ttgaaatggt agtgcaagat ttgaaaaaga cacctttctt tagtataggc      1200
     actgattcga gtaatcatgg taatttgaaa atgtttccat tgatagtcca atattttgat      1260
     cctgctgaag gagggatagt tgtcaaattg ttaaatatca aagaaaagtt tgatgaaaaa      1320
     gctcaaacta ttgctaacat gataaaaagt gaattggata aacatgtttt gactgagaaa      1380
     ctggtcgcat acggaggcga taatatcaat acaaactttg gtgggctgaa tcgcaaagaa      1440
     ggagaaaacg tattgactta tttaaggcgt gaaatcaacc aaaatatcat tggcattggg      1500
     tgttcaggcc atgtcatgaa caattcagct caccatggta tagatcggtt cggttctttc      1560
     gacattgaat gtattgtaat gaacattttc aatcacttct cgatttacac tgttcggaca      1620
     aatcaattaa agaatttttg cgatttcgtt gacgtggagt acaggaaact gctatctcac      1680
     agcaaaacac gttggctaac cctcaagaat tgatckaatt ttacaaattt ttccagctct      1740
     gaaatcattt tttttatcca ctgaccatcc gccaattatt ttagagagtt tttacaaaga      1800
     tgattttgcg gaattgcaat tgctgtttat aagttcactt atgaatgtct ttcacaatag      1860
     aatcaaaagc atcgaacgcg aagacaattc tgttctagaa gttctgcaaa tcattgacga      1920
     agtatcggag actttgactg aaagacttaa ttcgaaattt ataccattcg cagtcaagca      1980
     gaaaatgcaa aagctaacaa atgaaggtaa agaaactgag tgtcaaaact ttacagaatc      2040
     catgcttgtg gtgtatgaaa gatcttgtga atatttgctg aaatggagcc agtcattgcg      2100
     tcatttggaa gacttcgaat ggttaaattt caagccagga aaagatttga ggtatgattc      2160
     tgttgaaaaa tctgttgcat ttctcgcatc caaaaatatt gaaattgatg atacaaaatt      2220
     gttcgaccag tttgttaatt taaaaaaatt tttgaataaa aaagaagcaa aggataattt      2280
     tttcagaaaa agwggcaatg aaaaagtctg tgawtttttt tctgctaata gttgtcttga      2340
     atcatgttct gaaatactaa aaattgctca atatttcttt gcgattccct gtcacaacgc      2400
     aaattgcgaa cgcgcgggga aagaattggg tggaaacgag aaaacggcgg tgtccgtatt      2460
     ttccacttca gttatctggt cacccta                                          2487
//
ID   hAT-1_DEl   repbase;    DNA;    INV; 2446 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2446
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 426-426 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 21-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           325..1407
FT                 /product="hAT-1_DEl_1p"
FT                 /translation="MSSSSADKPDCECSSSTDSEKDLEPNRQSNKKKSKIS
FT                 RVWKYFKRSDDKKYAKCLDCGEEYKTSGNTSNLHDHLKRFHPGVERKSPES
FT                 STQVVRAERNVTTSTSSSCRSSMNSVASYFKRAVMYDSNSKRKTDIDKALT
FT                 EMVAKDVQPYNIVENEGFVQYTHVLDPRYKLPSKTHLRDVLMYNYFTETSA
FT                 KLSAILVNVSNIAVTCDLWTSSANASFLTVTGHFVYNYELKTASLATKKLL
FT                 STTNHCSQNIADTLRDIFIEWNILEKTVCIVTDNASSMLKACDLLHIRNLP
FT                 CFAHTINLVVQDALKVDDPVLQALFTKCKSIVRFFKQNTISNEKLKLAQEG
FT                 SEYTLLQETPTRWNSFIL"
XX
SQ   Sequence 2446 BP; 798 A; 467 C; 467 G; 704 T; 10 other;
     tagaggtgga gaactatcga tggcactatc gccactatcg atggtttagc actatcgagc        60
     caccatcgat ggcagcagac accttcgata ctggcccatc cactatcgat ggtgccatcg       120
     atagtgcgct tcttacatcc ctaaaaaatt tgttcgcgca ttttccgtgt cggcgtcaaa       180
     tgcaaaaacg aggaaaaatt taaaaacaag aaacaattag ttaaattaat atggatcgct       240
     ttttaaatmt gtgtatgttt actatattat atacgtaagt gttttgatct ataatttgtt       300
     aaatttaagg taaacgtcga gtaaatgtct tcatcaagtg ccgacaagcc ggactgtgag       360
     tgctcctcca gcacagactc tgaaaaagat ttggaaccaa atcgacagag taacaaaaag       420
     aagtcgaaaa tttcacgtgt ttggaaatat tttaaaaggt ctgacgacaa gaaatatgcc       480
     aaatgtctcg attgtggcga agaatacaag acaagcggca atacatctaa cttgcacgac       540
     catttaaaaa ggttccatcc tggcgtggaa agaaagagcc cagaatcgag cacacaagtt       600
     gtacgtgctg agaggaacgt cactacatct acaagcagca gttgcagatc gagcatgaac       660
     tctgtggcgt cttactttaa aagagccgtc atgtatgatt caaattctaa aagaaagact       720
     gacatagata aagctctaac tgaaatggtt gccaaagatg tgcagcccta caatattgta       780
     gaaaacgaag ggttcgtgca atacactcat gtattggatc ctcggtataa attacccagc       840
     aagacgcact taagagatgt gctgatgtat aattatttta ccgaaacttc tgccaagtta       900
     tcagcaatcc ttgtaaatgt ttcgaatatc gcagttacgt gtgatttgtg gacatcaagt       960
     gccaatgcta gttttttgac tgtgacgggt catttcgtat ataactacga attaaaaaca      1020
     gcatccttag caacaaaaaa acttctaagc acaactaatc attgttcaca aaacattgct      1080
     gatacattgc gggacatttt tattgaatgg aacattctgg aaaaaactgt atgtattgtt      1140
     accgacaatg ccagctccat gcttaaagca tgtgatctat tgcatattcg caatctgcca      1200
     tgctttgcgc atactataaa tctcgtggtg caagatgctc taaaagttga tgacccagtg      1260
     cttcaagctt tatttactaa gtgtaaatca atcgttcgat ttttcaagca aaacactata      1320
     tcaaatgaaa agctcaaatt agctcaagaa ggctcagaat atactttgtt gcaagaaacg      1380
     cccactaggt ggaatagttt tattttatga ttgagcgtat tataaaaatg aacgatgcca      1440
     ttgccaaagt tttacaatca acaacgaatg caccgcagcc atttactgct gaggaaatac      1500
     ttatgctgaa agatattgaa aaactgatta ttcccatgac atatggcttt ttcggaaaat      1560
     cgaaagtgtt gtacctttac tacaaactct tcaaggaaaa actttaaaca aaatattgat      1620
     ggaatcaatc aagcaacgtc tttccgtata tgagcagaga acagtctgca ggatggctac      1680
     gcttttggat ccacggttca aaaaaagtgg atttcaacat agctcaaacg ctgaacaagc      1740
     agcaacatgt tttgaaaatg agctggccaa ttttccagtt aaagagaccg caagtaatca      1800
     acccgtagca ccggattcaa gtttacagga tactttgttc gattttttgg gtgagcgttc      1860
     catgaataaa tttgtaaact caagagtcga tgcaatttta actaagaggc agtatctgga      1920
     aagggcaatt gtcggacaag atakcggccc atccactats gatggwgsca tcgatagtgc      1980
     sctwmttama agtgccgagt tataaattgc atataattga gtatattact tttttccagg      2040
     tgaatcaaac tgatttccct gccattggga gccttttcgc caaatatctt tgcattccgg      2100
     ctacgtccgt ggagtctgaa agaacattca gcaaggcggg ccaaataata tcggagaggc      2160
     gaacccggct caaagaaaaa aatgttaaca ttcttttgtt tttaaatcgc aactcttggc      2220
     tgaaataaag catattttat tgtattcgtt tcattctttt tttttaaatc gtaacttagt      2280
     taaaataaag cataatattt ttatatttgc ttaaaaaaaa tttttttgtt gggctacccg      2340
     gccactatcg agccactatc gatggcacta tcgacactat cgatggttta aaataaamta      2400
     tcgtcgacta tcgatggcgc ccactatcga tagttctcca cctcta                     2446
//
ID   hAT-1_DF    repbase;    DNA;    INV; 1573 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1573
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 803-803 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Partial sequence. ~94% identical to
CC   Hoana4.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           309..1235
FT                 /product="hAT-1_DF_1p"
FT                 /translation="MIKAFSSSDKIHCINHLLNNAVEKAINAIPEVENIVA
FT                 SCSKLVRYFKKSGNNSSLGVSLKSFCPTRWNTVYYLLKSIEINWIELTAIL
FT                 KEKNQTCRVDDININQLGAIVRLLEVFENVSKKLEASKRPTIHLILPNLNK
FT                 LKKTCHIEYYDTDIIKSLKFQLNSQILTTVTPNLTKYHNIALFLFPPTNKL
FT                 IQFSQTEKETIIKDCKIIMTQFLQDNSDLNNYEPQLVDDEFADYFDVPQIE
FT                 TIQDKVEREISGYSNINVXYTTDFSALAWWHLNKQFFPESRCTKQAAKYFA
FT                 FQRAARLRNGPFQTQEI"
XX
SQ   Sequence 1573 BP; 535 A; 294 C; 263 G; 477 T; 4 other;
     tacaaagcct ttggatatgc tattaccagt gacatatgga cggataattt cttaaaaaca        60
     gcatatttgt cgtgcactgt ccattacata agggagggag ttttggtcga tcgccttatg       120
     gccatgaagt caatgaaggg ctcgcccagc acaggtttgt taaccccatc tttatatttc       180
     aagtataatt acaatttttt ctttatcaag gtgacaatat aaggacaaaa atagaggcga       240
     ttttgaagga ctttggatgt gaccttgaag tagacaaacc cgtaatcgta actgatcgtg       300
     ggtcgaacat gattaaagcc ttttcgagct cagataaaat tcactgcata aaccacttgc       360
     ttaacaacgc tgttgaaaaa gctattaacg ctattcccga ggtggaaaat attgtcgcaa       420
     gttgcagcaa gctggtcaga tattttaaaa agtcaggaaa taattcatck ttaggggtgt       480
     ctttaaagag tttttgtcca actcggtgga ataccgtcta ctatttgctt aagtccattg       540
     aaataaattg gatagagcta acagctattt taaaagaaaa aaatcagacc tgcagagttg       600
     atgacatcaa tataaatcaa ttaggtgcaa ttgtacgatt gctggaagtt tttgagaatg       660
     tgtccaaaaa acttgaagct tctaaacgcc caacgataca tttaattttg ccaaatttaa       720
     acaagctaaa gaaaacctgc catatcgagt actatgacac agacataatt aaaagcctta       780
     aattccaact caatagccaa attttgacaa cagttactcc aaatttgaca aaataccata       840
     acatagcttt gttccttttt cccccaacca acaaacttat tcaattctca caaactgaga       900
     aagagaccat tattaaagat tgcaaaatta ttatgacaca atttcttcaa gacaattctg       960
     acctcaacaa ttatgaaccc cagttagtag acgatgaatt tgctgattat ttcgatgtcc      1020
     cccaaattga gacaatacag gacaaggtgg aacgagaaat ttctggatat tccaatatta      1080
     atgttgmata cactactgat tttagtgctt tagcttggtg gcatttgaat aagcaatttt      1140
     ttcctgagag ccgttgcaca aaacaagctg caaaatattt tgcattccag cgagcagcgc      1200
     ggcttcggaa cggacctttt caaacgcaag aaatttaata acagagaagc gttgtcaaat      1260
     agccactaac tctgaaaata tcaacaaaat aatgtttttg cattcaaatt taaattagtt      1320
     gtaagttatt gtaaatttag aaataaataa aataaaaaac cataaatata aagccttttc      1380
     ggactcgaag aaaattcact gcatttaatt tgcttttatt tccttttatt tacatttgca      1440
     actcgaatca ttcgaatgca acgtctctgt tttcaacgtt ctcaattcac tcaattcgtt      1500
     tccttctacc tgctmkttgt gcaaatgagt aagcgaaaga gagtcaaccc tctcactcca      1560
     tgttggcttc gct                                                         1573
//
ID   hAT-1_DK    repbase;    DNA;    INV; 2846 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2846
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1223-1223 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           844..2475
FT                 /product="hAT-1_DK_1p"
FT                 /note="transposase."
FT                 /translation="MARDLLPFHIICHSGLKDFLKKYRVVATDADIPHYKT
FT                 LSTTALDDVYECILRAVTRIVSGQKHFALTFDLWTDNYRRRSYITFTFHFL
FT                 SANFEMKHLTLETKYLSKSHTASNILTEVEEVTQMYNLQMGSNYVVTDQGS
FT                 NIKKAINLGCIKNHFCLGHGLHNLLNVDGYNSEPEIKNLIVKCKNIVSALR
FT                 FKTHVLRCQADELQKEVLSNIDNLEELLASEDNEWVDYDDDFGPLDDVPLQ
FT                 TYKNINNPNDLQSSLVDKRNVSLKNSVPTRWHSVLTMLDSLGCQRAALNKL
FT                 LTSSNKTHLILLENEAQLLYKLCDFLKKFKDAVTVLSGDLYPSISLALVIR
FT                 TEIVSILEEPENNEPLALTLMKSHIKNRFDSRFPISDILVCASLLDPRFNS
FT                 LDCVLEYCEKQSLKRNDFLLKMFKELIGDVEQDSDQQQESHSASKILKLAQ
FT                 RHSTNTKDNNLEAECHLLLSLSSCQDVLTFWKEKAPAMPLLSMLAQKVLCI
FT                 PATSTPSERVFSIAGLTITQKRSQLSPHNVNKVIFIHDNYDTCKESLT"
XX
SQ   Sequence 2846 BP; 943 A; 522 C; 532 G; 849 T; 0 other;
     tagacatata cgccgccgcg ccacgccgcc gccgccgccg atttttgcct tatttgacgc        60
     gccgccgccg aattatgaaa aaaacggcgc gccgcggcgc gccgctggtg cggcaccggc       120
     gtagcaccgg cgcggccttc ggtgatatta ttcttaatat aacttaaaaa caaaaataaa       180
     taaatcatac aaatggccaa atactcgata taaataatcg attaatcgtt aggattgtct       240
     catctcccat ctccctatgt cccatctcta gaacagctat ttggtgtggt ttactttcta       300
     aagctgtgtt ttttgtgcgt aaatatgcaa agtaagtttt aaaatactat tactagtgtt       360
     aggaacatat gtattaatta aatattctct aaacaaatag atggatcagc cattgagtat       420
     gtactcaatt aaacacaacc attactcaaa tcgaaagagc aaagtgtggg agtttttcgg       480
     cgcattgcaa ttagagaaca actgcattga agtggacaag gtgttctgcc gattatgttt       540
     ggatgttcag aaaaaagacg acgaaagaac aatcttttca tggtaataat taagttcctt       600
     tttttaagat tcaagtaaga ttttgtaaat tgtttcagtg ctaaaattca gtcgtattcc       660
     acgaactgtt ccacagggaa tttaagtcga cacctcaaaa atgaacacaa cattcgagat       720
     atcgacagtc cgagtacttc attggctaca cgtggatcaa tatcaaattt tttcaaaaaa       780
     tcgacgccaa ttatatctcc aaaagatagt aagtgggcgc tgggacgaga gctagctttg       840
     tggatggcta gagatttgct accatttcat ataatttgtc acagtggact taaagacttt       900
     ttaaaaaaat atagagttgt ggcaactgat gctgacattc cacactacaa aacgctgtca       960
     acaactgcac tagacgatgt gtatgaatgc attttacgag cagttacacg gatagtatct      1020
     ggacaaaaac attttgcctt aactttcgac ttgtggacag ataactatag aagaagaagt      1080
     tatataacgt tcaccttcca ttttctgtca gcgaattttg agatgaagca tttaacgctg      1140
     gaaacaaaat atttgtcaaa atcgcacacg gcaagtaaca ttttaacaga ggtggaagaa      1200
     gttactcaaa tgtataattt gcaaatggga tctaattatg tcgtaaccga ccaaggcagc      1260
     aatatcaaaa aagctattaa tttggggtgt ataaaaaacc acttctgcct tggacatgga      1320
     ctacataatt tgctaaatgt tgatggttac aattcagagc cggaaattaa aaatttgatt      1380
     gtgaagtgca aaaatattgt gagtgcctta cgattcaaga cacatgtttt gagatgtcaa      1440
     gctgacgaac ttcaaaagga agttttgtca aatatcgaca atttagaaga actgctggca      1500
     tccgaagata atgaatgggt cgactacgat gatgattttg gcccgttaga tgatgttccc      1560
     ttgcaaactt acaagaatat taacaaccct aatgacttac aaagtagttt ggtggacaag      1620
     agaaatgttt cacttaagaa ctcggtccca acaaggtggc acagcgtgtt aacaatgtta      1680
     gacagtcttg ggtgccaaag agccgcatta aataagttgc tcacaagcag caataagact      1740
     catttaatat tattagaaaa tgaagcacag cttttatata aattatgcga cttcttaaaa      1800
     aaatttaaag atgcagttac cgttttgtct ggagatttgt atccatcaat aagtcttgcg      1860
     ttagtgataa gaactgaaat cgtctcaata ttggaagaac ctgagaacaa tgagccgctt      1920
     gctttgactc tcatgaaaag ccatataaaa aatagatttg attcaaggtt cccgatatcg      1980
     gatatactag tctgcgcatc cctattagat ccgcgattca actcacttga ttgtgtgttg      2040
     gagtattgcg agaaacaaag tttaaaaaga aacgattttt tgttaaaaat gtttaaagag      2100
     ctgattggag atgttgaaca agatagcgat cagcagcaag agtctcattc tgcaagcaaa      2160
     atcttaaagc ttgctcaacg gcattcgacc aataccaaag ataacaattt ggaagctgaa      2220
     tgccatctac tcctaagctt atcttcatgt caagacgtat tgacattttg gaaggaaaag      2280
     gcacctgcaa tgcccttact ttcgatgctg gcacaaaaag tgttgtgtat tcctgcaacg      2340
     agcactccaa gtgagcgagt tttttctatt gctggtctta caattacgca gaaacggtcg      2400
     cagctcagtc ctcacaacgt aaataaagta atttttatac atgacaatta cgacacttgc      2460
     aaagaaagtt taacttaaat ttacaaattg aagagataaa aatgaactga attgaaaact      2520
     gaacattaat tatgtgaatt atgaatgaaa cttattcaag tcaaggaaaa agactgctat      2580
     ttttatgttt atttttattt gttacttaat ttttatttat tttcatttca tttacccaat      2640
     taatttactc acttatgttc attttattgt tattgttaat aaaggcgtta taaactgata      2700
     taatacaata atactaattt tatttaattt gaaaaaaatc tgtacgccgc cgccgccgat      2760
     tctttctgac tactacgccg ccgccgccga gtcattttga cctctacgcc gccgccgaag      2820
     tctttaacca tcggcgtaaa cctcta                                           2846
//
ID   hAT-1_DMo   repbase;    DNA;    INV; 3124 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-3124
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 3124 BP; 1090 A; 504 C; 544 G; 986 T; 0 other;
     attagaggcc tgcatgggta tgcttgcttg tggtcgtctt ccaaatatac tgatacttgc        60
     aagtgtttga gcacaccaag cattgctgca aaacgaaacg aatggtactc gaagtcgcca       120
     agtattctgt tttactttac ttccttcgct ttaagcagag taaaacaaaa accttgacaa       180
     acgaaacgaa acaaaacgaa aagcgagtaa cgtcaaaaaa aaatcgtacg gtacttttac       240
     tccgctttga gcgccgttgc tgagcaaaaa tcaggctaga attggctaaa aattgaaaat       300
     aaatgctgga atagcaacct agattataaa aactaactga tatgtttaga aactaacatt       360
     tttttctttt ttgctgaaat gcacaatgtt ttatagtcta ctcagtaata tgctgcaata       420
     ttgagtacta tatgaacttg aaaagattta tgattgctag atttatggct ataggctata       480
     acgaatttta tagtaaatag cataaactgg catcactatt tacaaatttt cgccatgtat       540
     gcatgtatgt atgcgtgcga aattacgatg tatgctgtaa atacatacaa aattgtcaat       600
     gccttgattt ctgctttcct tcaatctctt tcggttaact gttttttttt tttttttgct       660
     ttcctttaat ctctttctgt gagttgttaa gtttgggtcg cttttttgtg cgtgctaaaa       720
     tgaacattga agaaaatttt gaaactaatt ccgaaaatgt aagtatgatt taattacaat       780
     tatgattgtt gatatttatt tactgatgga ccactgtaca taaatatgta ttgctttcaa       840
     attagcatgg aatattggca aactcacata tccatccagc aatatgatgc gatcaagacc       900
     aaattgctgg aaggaatata taaatttaag aacaaaagag gacggagtga agtctggaat       960
     acgctaggaa tggtaatgga tgagaatgga gaagaattaa aaaatattgt tggatgcaaa      1020
     aaatgtttca aaattctgaa gtactctaat tgtacttcca atttagttaa acacaaatgc      1080
     tgtgtagcag caaagaactc gttaactgaa acagacgtcc ctgcaacacg tgtcgatcca      1140
     gaaaccaaaa agcttatttt agaagctgct actgaatgga ccgtcaaaaa ttgtcggccc      1200
     tttaatatca tcaaagacga tgggttaacg tgaaattact tgcaatattt actaaagttg      1260
     gagcaaaata tggtagtgga gtaaatatag atgaaattac tccccacccg tcgacaatct      1320
     cgagaaatgt gtcagagctc tacaatttag agtttcaaaa tataaaagca gatgttatta      1380
     aagcaaaaac atccggctat agcatcacat ctgatatctg gacggacgag ttcctaaaga      1440
     gatcatatat atcgtgcaca gtgcactata ttagagacgg tgcaatgctc acccgcctgc      1500
     tagcactgaa gtcgatggga gatgaatcaa atacaggtag aatagcttga ttaatattcc      1560
     aatagctctt ttgaaataat gtttattatt ttaggcgcaa acattaagaa taaaatcaca      1620
     aaaattttga atgattataa tttggcaatg gatgacgaca aagccatagc agtcactgac      1680
     cgaggctcca acatgattaa cgcatttaaa agtggcagtc acattcattg cataaatcac      1740
     ctattaaata atgttgtgga gaaagcattt aaagatattt tagaactatc tgacctgtta      1800
     ctcaattgta acaagatagt aaaatatttt aaaaaatctg ggataaattc ccaactcaat      1860
     gtatctctca aaagtttttg tcagactagg tggaatacag tgtattacac ttttttttca      1920
     ttatcacaaa actgggaaaa aatcactaca attttaaaag agaaaaatga aatttttcgc      1980
     ttggataatg taaacattga caatgttaaa tctattgtaa aaattttaga acattttgaa      2040
     aggacttcaa aaacattgga aggagaagac tattcgacac tacattcagt cataccatac      2100
     ataaattttt ttaaaaagaa aaactaaagt tgactcaagc gatactggtt tagctagcca      2160
     attaaaatct tctttaacta gcctacttca aaccgttgtg gatccttata ttacggacta      2220
     tcacaaaatt gctttgtttt tatttccccc cacaaacaga ttggttagct tgagtaacgc      2280
     tgaaaaagaa cgaatagttg aacagtgtaa agaattaatg gcaaactatt ggttaggaag      2340
     tgactctgac caaacaatat tgaaaatgac agaggagcaa gaagtatata ttgacgaaat      2400
     gccagtttat agtgacaatt taactgaatg tattaactct gaacttcata catacatgtc      2460
     tctcaaagtt ttttactcag atgggtttaa cgttttagag tggtggaatt tgaataaaga      2520
     acattatcca ctacttttta aagtaagctg taaaatttta tgcattcccg ccagcagtgc      2580
     ttcgtctgaa agggctttct ctcaggcccg gttattaatt tccgaaaaga gaagcaatat      2640
     tgccacaaac agcgccatga ttaatgaagt tatggtttta aacttcaatt taaaaaaaaa      2700
     tatatatata tataaatatt tgttaaaaaa tatgtaatgg ctaagattat aaaattacgt      2760
     ttatataaat aaaatgttgt tattattttt atttctaaat aaaaatgtct ttgtgcattc      2820
     aatagtaata tgctaaatct agcttgaaag cttgaaatag tctaacgtgg catcactagc      2880
     tgatagctaa aacgaaaaca atacttgaat tatgctttat cgtttctttc gttcgttgct      2940
     tcctttctgt acaagcatct gcattccgaa ctgttcggta tgtgagcaat gctcgttttg      3000
     tttcgttcgt ccacgatgct ttggcttaca ctatttgaac aaaacgaaac agtgtgaaac      3060
     caagcaccac caagacacgg gtgtctcgtt tagcgtttga gacgtattcg tgcaggcctc      3120
     taat                                                                   3124
//
ID   hAT-1_DP    repbase;    DNA;    INV; 2699 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   19-MAY-2005 (Rel. 10.02, Last updated, Version 2)
XX
DE   hAT-1_DP is a family of hAT DNA transposons - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Interspersed repeat;
KW   Autonomous DNA transposon; hAT-1N_DP; hAT-1_DP.
XX
NM   hAT-1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2699
RA   Kapitonov V.V. and Jurka J.;
RT   "hAT-1_DP, a family of autonomous hAT transposons from Drosophila
RT   pseudoobscura.";
RL   Repbase Reports 5(2), 44-44 (2005).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           417..2204
FT                 /product="hAT-1_DPp"
FT                 /translation="MSLIRKYSEIWNHFEEVGSQEAKCKYCKSILSCKSQS
FT                 NLSRHLKSKHPASMEPVIRQNTDGPIFVQSAQPKITSFAERPVPASKAQQI
FT                 DLQLVRMIAKGHHALRLVEEPEFKKFIHDVSHAPNYKLPTRKTLTSSLIPK
FT                 IRDEYTGTIIEELRAATAVCLTTDGWTSITNESYLAVTVHFIDEESTMLTS
FT                 YTIACQAFEASHTAANLCSFLEKIVNEWDLKNKVAAIASDNAHNIALAIRT
FT                 GNWSHIRCFAHTLNLIVQKALDKMSSVRRKAKAISEYFHRSSSGLKKLKDM
FT                 QALLKLADLKLTQDVPTRWNSTYKMFERLSILKEAVVAALSTRTDLILSPE
FT                 DWDVIDGVLPVLKPFYEVTEEISSAEKNVTLSKIIALTGLLQRKMAQIYPT
FT                 VKNNLVAEVINEIINEMDGRFNDFEANILYAESTVLDPRFKGRAFKSAEAF
FT                 KKSVADINKKLAQTIRSLPEPPQEAISNKKQEEDTIWAEFDTTFQQVSQPT
FT                 NNTAASIREMDKYLAEEYISRKDDPLVWWNQRKAQYPLLYTYMLKRLCLVA
FT                 TSVPCERIFSSAGETIRKRRSLLKSTTVENLIFLHNNMQIGSEYNLICT"
XX
SQ   Sequence 2699 BP; 838 A; 520 C; 547 G; 793 T; 1 other;
     tagtgttgtg ttgctcatga gtgagtgaac aaaaaagagt tgttcactta agtgagcaac        60
     tgaacatgtt ccttccaagt tgttcttttt tgttcacttg ttctttgttg ttcacttgtt       120
     cttttttgtt cacttgttct tttttgttca cttgctcttt tttgttcact tgttctttgt       180
     tgttcacttg ttcttttttg ttcacttgtt ctttgttgtt cacttgttct tttttgctca       240
     cttgttcttt gttgttcact tgttcatttt tactcacttg ttcattttta ctcacttttt       300
     gcgcaatttt gctcctcaaa gggcattttg cgatctggta gctttgctca tatttgcgtt       360
     tacttcacac tttttatatt acgggcaaag ctgtttacaa ttttgaaaaa ttcactatgt       420
     cgctaattcg gaagtatagt gagatttgga accatttcga ggaagttgga agccaggaag       480
     ccaagtgcaa gtattgcaaa tcaattttga gttgcaaatc tcaaagcaac ttaagccgcc       540
     atttaaagag caagcacccg gcgtctatgg agcccgttat ccggcaaaac accgatggcc       600
     cgatttttgt gcaaagtgcg caaccaaaaa taacaagctt tgctgaaagg cctgtaccag       660
     cgagcaaagc gcagcagatt gatctgcaac ttgtacggat gatcgccaag ggtcatcacg       720
     ccttgcgctt ggtcgaagaa ccagaattta aaaaatttat tcacgatgtg tcgcacgccc       780
     caaactataa gcttccgacg aggaaaacat taaccagctc cttgattccc aaaattcgtg       840
     acgagtacac tgggacgata atagaagaac tacgtgcggc cacagcggtg tgcttaacta       900
     cagacggttg gacatctata accaacgaaa gttatctggc tgtcacagta cattttatcg       960
     atgaggaatc aacgatgctg acctcctata caattgcttg tcaggccttt gaagcgtcgc      1020
     acactgctgc gaatctgtgc agctttttgg aaaaaattgt gaatgaatgg gatctcaaaa      1080
     acaaagtcgc agcaatagca tccgataatg cacacaacat tgctcttgct attagaaccg      1140
     gcaattggag tcatatacgg tgttttgctc ataccctaaa tctaattgtc caaaaagctc      1200
     tagataaaat gagcagtgtg cgcagaaaag ctaaagctat aagcgaatat tttcatcgca      1260
     gctcatcagg cttaaaaaag cttaaagata tgcaagcgct gcttaagttg gctgacctca      1320
     aactaacaca ggatgtgcca acacgttgga actcaacgta caaaatgttt gaacggctgt      1380
     ctatcctgaa ggaggcagtc gtggcagctc tgtcaacaag gacagattta attttgtcac      1440
     cagaagactg ggatgtcatt gatggagtgc ttcccgtatt aaagccattt tatgaagtta      1500
     cagaagagat ctcttcagct gaaaaaaacg taacattgtc aaaaataatt gctttgactg      1560
     gattacttca aagaaaaatg gctcaaatat atccaacagt taaaaataac ctagttgccg      1620
     aagtaatcaa tgaaatcata aacgagatgg acggcaggtt taacgatttc gaggctaata      1680
     ttttgtatgc ggagagcact gttctggatc ccaggttcaa aggacgcgca tttaaatctg      1740
     cggaggcctt taaaaagtca gtagcggata tcaacaaaaa attggctcaa acgatacggt      1800
     cactccctga acctccacaa gaagctataa gcaacaaaaa acaagaagag gacacaatat      1860
     gggctgaatt tgacaccact tttcagcaag taagccaacc caccaacaat acggcagcat      1920
     ccataagaga aatggataag tacctggctg aggagtacat cagccgaaaa gatgatccat      1980
     tggtatggtg gaatcagcgg aaagcgcaat acccgctact ttatacctat atgctgaagc      2040
     gcctctgctt agtcgccacc tcagtgccat gcgagcgcat attttcaagt gcaggcgaaa      2100
     ccatacgtaa aaggcgatcc cttttaaagt caacaaccgt tgaaaattta atttttttgc      2160
     ataacaacat gcaaatcgga agtgagtaca acctaatttg tacttgattg cttgtttgct      2220
     tgattaacat ttttttctct tatagcgcta aaatgaagaa aacgaaaagt ataagaattc      2280
     ctatgaaagg atctccttat ttttatgtta gtataagaat tcctatgaaa ggaaataaaa      2340
     agtttgtttt tttgttatat acattttttt tttgttttta gttataaatc tttgatgaat      2400
     attgaaatgt aacgtatttt atttgtktaa aagtctgtgg tgcttagggt tctgtgcatg      2460
     aatagtgaac aactgagcaa gtcagcaact gagcaagtga acaactgagc aagtgaacaa      2520
     ctgagcaagt gaacaagtga gtaactgagc aagtgaagaa ctgagcaagt gaacaagtga      2580
     gtaactgagc aatctaagag agcaagtgag caagtgagca atatgagtga gttgactcac      2640
     ttactaaaaa agaacaagtg aacatgttca ccaaaatgag caatgtttac ccaacacta       2699
//
ID   hAT-1_DRh   repbase;    DNA;    INV; 1451 BP.
XX
AC   .
XX
DT   17-JAN-2012 (Rel. 17.08, Created)
DT   17-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1451
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1426-1426 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           233..1345
FT                 /product="hAT-1_DRh_1p"
FT                 /translation="MKKACVSLKYKHLPCVAHTINLLVQDILKQPILEEIL
FT                 SKCKTVVSFFKRSSTAYAKFKAAQKTETPYGLVQEMPTRWNSAYEMIKRVI
FT                 LTNEYISVVLAVSHNAPSPLSAEEIDVLKEISILLAPCADATLSVSTNTNV
FT                 SISLIIPVICELFHKVNGFDFKTIEGIAAADYMKIRLRERLFAYETRTIPR
FT                 IATILDPRFKKQGFLAQSNSEEAAKALQEELNSVMTTTPRPQPAPPTEEPT
FT                 RFSFLKTKMETTVQSLRADSIILLRQHLEKGNQPEKCDPLAYWEVKLYMLS
FT                 LLFFKYSIKQNILFQMSTDEPFKKISKKFLCIPASSCESERLFSKAGQMIS
FT                 DRRTRLSPSVVDKLLFLNKNKNINKIKI"
XX
SQ   Sequence 1451 BP; 482 A; 318 C; 270 G; 381 T; 0 other;
     tagaggtgga gaaaaatcga tgttaacatc gatgtaatcg atgttttcaa aacatcggta        60
     acatcgatgt tcggtgccaa acatcgatgt tttccatctc ttatcaacac aacatcttct       120
     aacgccaaca aatcacaccg ctgcaaatat agcagaaacg ataaaatcgg tgctagatga       180
     ctgggcgata gcgcaaaaag ttgtatgtct tgtgtctgat gacgacgctt ccatgaaaaa       240
     ggcgtgcgtt tcattaaaat acaaacactt gccgtgtgtg gcccacacta ttaacctgct       300
     ggtccaggac atattaaaac agccaatatt agaggaaatt ctaagcaaat gcaagactgt       360
     cgtatcgttt tttaaaagaa gctcgactgc gtatgcaaaa ttcaaagcag cacaaaaaac       420
     agaaactcca tatggcctgg ttcaagaaat gccgacgcgc tggaatagcg catacgaaat       480
     gatcaagcga gtaattctga caaacgaata tattagtgta gtattggctg tatctcacaa       540
     tgccccttca ccgttgtctg ccgaagaaat tgacgtttta aaagagattt cgatattgct       600
     tgctccatgc gcggatgcaa ccttgtcggt ttcgacgaac accaatgtct caatttcgtt       660
     gatcattcct gtaatttgtg aacttttcca caaagttaat ggattcgatt tcaaaacaat       720
     tgaaggaatc gctgccgcag attacatgaa gattcgtcta agggaaagat tgtttgcata       780
     tgaaactaga acgattcctc gtatcgcaac aattctcgat ccgcgattca agaagcaagg       840
     gttccttgcc caatcgaact cggaggaagc ggccaaggct ttgcaggaag agctgaactc       900
     cgttatgaca acaactccac gaccgcagcc agcaccacca acagaggaac ctacacggtt       960
     ctcattcctc aaaactaaaa tggagacaac agttcaatca cttcgggcgg attccattat      1020
     actcttacgc caacatctag agaaagggaa ccaaccggaa aagtgcgatc cgttggcgta      1080
     ttgggaggta aaactttata tgctaagtct tttgttcttc aaatattcaa ttaaacaaaa      1140
     tatcttattt cagatgtcaa ctgatgaacc atttaaaaag atctcgaaaa agttcctttg      1200
     tattccagca tcctcatgcg agtctgaacg cctctttagc aaggcaggcc aaatgatttc      1260
     ggaccgtcgc actcgcttat cgccatcagt cgtcgataag cttctgttcc ttaacaaaaa      1320
     caaaaatatt aataaaatta aaatataata acaaaaaaaa attttgttaa acatcgatta      1380
     aacatcgatg tttttcacca aaaacatcga aaacatcgat gtccacaaac atcgattatt      1440
     ctccacctct a                                                           1451
//
ID   hAT-1_DSi   repbase;    DNA;    INV; 2566 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   hAT-type element: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2566
RA   Jurka J.;
RT   "DNA transposons from Drosophila.";
RL   Repbase Reports 12(8), 1374-1374 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. Low-copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           730..2202
FT                 /product="hAT-1_DSi_1p"
FT                 /translation="MIAKGHHALRIVEEPDFKQLIDDVSNCPGYKMPTRKT
FT                 LSNVLLPKLRDEIVGSVKEKMELASAVCLTTDCWTSLANESYIAVTAHFIE
FT                 SEATVMSSHMIACEAFVEQHSGQNLCAFLQKIAERWSIENKISAVVSDNAA
FT                 NIVNAIKTGNWPHIPCFAHSLNLIVQKGLREISVVQNKVKFIVEFFNRSTF
FT                 GLKKLKSTQTQLNLPDLKLIQDVSTRWNSTFKMLERLVVLKDALILTLSTL
FT                 RSELNLSQNEWAIVEELLPILKPFMEVTEEISAEKNVTLSKVIVLAILLQN
FT                 CLNNKTPKDKCVAALVAVLKAEMNRRFCKLESNELYAESNILDPRFKGRWF
FT                 KSKEEYEKAVCNLKRKVTPIRLNSENYEFESPAFETNSANQSSVWCDFDSE
FT                 FKNTTKAANTTGSAEKEMEKYLEEEFIPRTADPLVWWEQRKKLYPHLYSYS
FT                 LKRLCLMATSVPCERLFSSAGEIIRKRRMLLKPNKVENLMFLHSNM"
XX
SQ   Sequence 2566 BP; 837 A; 454 C; 493 G; 782 T; 0 other;
     tagtgttgtg tcgttcgtga acgaacgaac taaattgaac tattcaccaa actgaacgaa        60
     cgaactaggt ctgcctttat agttcaatat agttcgatag ttcaatttag ttcacttagt       120
     tcaatatagt tcacttagtt cacgtcgttc attttgatct cttaccctga tcgttcgttc       180
     gttgttcact tagttcgata ggtcggtctg agttcactta gttcgatagg ttggtctgag       240
     ttcacttagt tcgataggtt ggtcttagtt catttagttc gaaagttcgc ttaccgaata       300
     agctgattaa ttttcgcata catttaaaac tacggtttac aagtttgtgc gtatctatgg       360
     cttcaaaacg aaagcatagc aaagtttgga atttctttga ttcagtggat gagaagagtg       420
     ctaaatgcaa atactgcaaa actgtgctta gtgtggctgg tggatcgcaa ggaaacttat       480
     cgcgtcacct taaaaataag cacccagcag ctttggagga aacaaagcgc caaaccaatg       540
     aaagccgaca ggaagcaaat gtaaacataa tattttgatt tattcattta agtaggctta       600
     ctaaattctt gatttctttt aacatagact cctcagataa ttggacccca acagcaagta       660
     ataacttcgt tcattcaacg accaccggct gccgggaaag ctgagaaaat tgataggcaa       720
     ctagttcgta tgattgcaaa aggtcatcat gcattgcgaa ttgtagaaga gcctgatttc       780
     aagcagctca tagatgatgt gtctaattgc cccggataca agatgcccac tcgaaaaacg       840
     ctgtccaacg tgcttcttcc aaagcttcgg gacgaaattg ttggtagcgt caaagaaaaa       900
     atggagctgg catctgcagt ttgtttgaca acggattgtt ggacctctct tgcaaatgaa       960
     agttatattg ctgttacagc tcattttatt gagagtgagg caactgttat gagctcacat      1020
     atgattgcat gcgaggcatt cgttgagcag cacagtggtc aaaatctgtg cgcattttta      1080
     caaaaaatag cagaaagatg gagtatagag aacaaaatat ctgctgtggt ttccgataat      1140
     gctgcaaata ttgtcaatgc cattaaaaca ggaaattggc cacatatacc atgttttgca      1200
     catagcttga acctaattgt gcaaaaagga ctccgcgaaa tcagcgttgt acaaaacaaa      1260
     gtcaaattca ttgtggagtt tttcaatcgt agcactttcg gccttaagaa gctgaagtca      1320
     actcaaaccc aattgaactt gcccgatctc aaattgattc aagatgtgtc aactcgttgg      1380
     aattcaactt ttaaaatgct agaaaggctt gttgtgttga aagatgctct tatattaaca      1440
     ctttctactc tgcgttctga attaaactta tctcagaatg agtgggcgat agtagaagag      1500
     ttactgccta tattaaaacc attcatggag gtaacagaag aaatatcagc agaaaagaat      1560
     gtaacccttt caaaggttat agttcttgcg attttgctac agaactgttt gaataacaaa      1620
     acgcctaagg ataaatgtgt tgctgcactt gttgcagttc taaaagctga gatgaatcga      1680
     cgattttgca agctggaaag taacgaactc tacgcagaga gtaacatttt agatcctcga      1740
     tttaaaggtc gttggttcaa gtcaaaagaa gaatacgaaa aagctgtttg taatcttaaa      1800
     aggaaagtaa ctccaattcg tctcaacagc gaaaattatg aattcgaatc acctgcgttt      1860
     gaaactaatt cagccaatca gagttcggtt tggtgtgatt ttgacagtga gttcaagaac      1920
     acgacaaagg ctgcaaacac taccggttct gccgagaaag agatggaaaa atacctcgaa      1980
     gaggaattta taccgaggac tgctgaccct ttggtttggt gggaacaaag aaagaaattg      2040
     tatccgcatc tatattctta cagccttaag cgactatgcc ttatggctac atcagttcct      2100
     tgcgaacgcc tattttcaag tgctggggaa atcatccgaa aaagacggat gctactaaaa      2160
     cctaataaag tggaaaatct aatgttcctt catagcaaca tgtagatgga tcacaggtat      2220
     aaacataatt ttatcatatg ttattgaaaa tgttccctaa taaacttctc tattctcttt      2280
     tcagaaatca aataaatgca ttaaaattac tatattatct gtttgtaaac tctttattat      2340
     ttcttattat tattatgtat aagtgttttt gacataaatt gaataaataa tattaatttt      2400
     caatgacagc attgtatgaa ataaattcat aacatttttt tttttttaag cacctttaag      2460
     caagtttaaa aaatgaacga ttgaactaaa tgaacgacct agttcattga ttttaaacga      2520
     acgaacgaac ttattcctca aattgaacta ggattaccca acacta                     2566
//
ID   hAT-1_DT    repbase;    DNA;    INV; 3432 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   13-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   DNA trotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_DT.
XX
NM   hAT-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3432
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1441-1441 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus (some copies are >98% identical).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           532..2301
FT                 /product="hAT-1_DT_1p"
FT                 /translation="MAQSDVWKHFENNIEQGQAICNICKISMKNNRLSNLK
FT                 SHLLKKHQITFNVSSAESVASSSNSTLKTIRKRKIKIEVNKKELLRSYIGL
FT                 VTEDSIPFNVLNSKNMRNIVDPICEGLKAADGKKITLNASNCKKTLKTVAD
FT                 NIKAHITKEVKYKLLSLKMDSATRMSRNIFGLSAQYVSADQVKSVVLGMVD
FT                 LRGVGASTAKNLAAEVITVLNQYSINLNQIVSITSDNGANMLKTTNLLSFV
FT                 SEQDMDEDDETSTNAFYLEQIESVEKIPSVYVGNIQVCRCAAHTAQLVALD
FT                 VIKASNLIKYLLHCRNMTKFIRKSSNGYREIFDLKKLKIPRLDCPTRWGST
FT                 FTMLSDLMDAKDVVSKIESIKNQSEEENFEVDGSFWEFIEVYCAVFTPLQK
FT                 TIKKFQEEQLHYGNFYAQWLKLKIGTEKIVSETNHELSKAIGTQILNSIEK
FT                 RTKALFSNKFIVSCLFLDPRFQHTLTVQQRSDAISHLKSIWDRLYDLNPTG
FT                 NLCSTPASSSSNLESEFLDEEDELLNAYLEEGVETQFSSVLDVYSKIENLQ
FT                 LPFKRIDVDVLAFWKGKQCTEQELYAISNVCFGVPPTQVNANA"
XX
SQ   Sequence 3432 BP; 1112 A; 675 C; 714 G; 926 T; 5 other;
     cagtgtttaa aatgctgcag tcgaagtagc aaaagtcaca taatttttca tttttcttgc        60
     ttcgactgcc tgtaactttt taatacgagc tgttgctttt gctgctgctt ctgaaaaagt       120
     cggcagtcgc agtcgaagca aaagcaaaat ccgagnactg ccgactgtcg aagcaaaagc       180
     aagtcgttgc tttctgattt tcggctgctg ctgtgctgct gctttcagtc ggtagcaaca       240
     gtcgaagcag cagctagcaa aactttctgg aagttgctat tgcttctgct gctgctnctg       300
     aaaaagtcgg cagtcgcagt cgaagcaaaa gcaaaatacg aaaactgccg actgtcgaag       360
     caatatgcga gtcgtgcttt cgaatgtttc gctgtagctt gcttcttctt caaagcagca       420
     gcaaagaaac attttaggga gtcgtcgcgt agtaactgca aagctacgcg cttttatttt       480
     tgctaatttc atttctaaaa agtttttgga mggagcagga cgtatttagc tatggctcaa       540
     agtgatgtgt ggaaacattt tgaaaacaac attgagcaag gccaagctat atgcaatatt       600
     tgcaaaattt cgatgaaaaa taacagactt tctaatttaa aatcccattt acttaaaaaa       660
     caccaaatta cctttaacgt gtcaagtgcc gagagtgtcg cgtcatcgtc gaattcaacg       720
     ctgaaaacca taaggaaacg caaaataaaa attgaggtca acaagaaaga gctgttaagg       780
     tcatacatcg ggttggtaac agaagacagc attcctttta acgtattgaa ttcgaaaaat       840
     atgaggaata tagtagatcc aatttgtgaa ggtctaaaag ctgctgatgg gaaaaaaatt       900
     acactaaatg cgtcaaactg taaaaaaaca ttaaaaacag tagccgataa catcaaagct       960
     cacataacaa aagaagtaaa atataagtta ctttctttga aaatggacag tgctactagg      1020
     atgtctcgaa acatttttgg cttaagtgca caatatgtaa gcgccgatca agttaaatca      1080
     gttgtgcttg gaatggtaga cttaagagga gttggagcca gcacagccaa aaatcttgcg      1140
     gctgaagtga tcactgtcct aaaccagtac agtattaacc tgaaccaaat cgtttcaatc      1200
     acgtctgaca atggtgctaa catgttgaaa acaacaaact tattgtcgtt tgtttcggag      1260
     caagatatgg atgaagacga cgaaacctcc acaaatgcgt tttacttgga gcaaatagaa      1320
     tcagtggaaa agattcctag cgtatatgta ggcaacatac aagtctgtcg ttgtgctgca      1380
     catacagcac agttggttgc tctggacgtt ataaaggcat cgaacttgat aaagtatctg      1440
     ctccattgtc gaaacatgac aaaatttata agaaagtcgt ccaatggcta tcgggaaatt      1500
     ttcgatttaa aaaagttaaa aattccgcgc ctagattgtc caaccagatg gggatcaaca      1560
     ttcacaatgt tgagcgactt aatggacgcg aaagatgttg taagcaaaat cgagtccatc      1620
     aaaaaccaat cggaggagga aaattttgaa gttgatggtt ctttttggga atttatagaa      1680
     gtatattgcg cagtcttcac tccgttgcaa aaaacaatta aaaaatttca agaagaacag      1740
     ctgcactacg gaaattttta cgcccaatgg ctgaagctta aaattggcac ggagaaaatt      1800
     gtaagcgaaa cgaatcatga gctttcaaaa gcaatcggaa cccaaattct aaattcaata      1860
     gaaaagcgaa ccaaagcctt gtttagcaac aaatttatag tctcgtgcct gtttttggat      1920
     ccgcgtttcc agcatacttt aacagtgcag caacgcagtg atgcaatcag tcacttaaaa      1980
     tctatttggg acagactata cgatttgaat ccaacaggaa atctctgctc aacacctgca      2040
     tcgagttcaa gcaatttgga aagcgaattt ttggacgagg aagatgagct tttaaacgcg      2100
     tacctcgagg aaggtgtaga aactcagttt agcagtgtat tggacgtata ttccaaaatt      2160
     gagaacttac aactaccttt caaaaggatt gatgtggacg tcctcgcgtt ttggaagggg      2220
     aaacagtgca ctgagcagga gttatacgca attagcaatg tttgctttgg cgtaccccca      2280
     actcaggtaa atgcaaatgc ttaaacacat ttaagattat agctatatat attcatttgt      2340
     tttataacag gtctcgattg aaagagcctt ctccgcccta agactggttc taacggatta      2400
     cagaagtcgg cttaaccaag atgtcttgga aaatatactc ttggtaaaac tgaatccaag      2460
     ctttttggac tcagctatag acacgctgcc acttttccaa gaagtagagg acgacgacgc      2520
     caattaatag ttttgtaatt aattagtacc taatgtcaaa tttttattta tataagttta      2580
     caccacagct attcccccta ccctcatcga caccacgatg agccacgaag acccgctgcc      2640
     gttcttgaca acaacacccg cttacactgg agacgactac tctaaattgc agaactgcac      2700
     tggtggcaga actacaagac gacactagca gcgacgtcaa cggcgacgag aagcgaagct      2760
     tgccggcaac gaggacttgg aacttagagt ttcgctgacc tgcgaattga gcaattagat      2820
     tcacctgact tgaagatttt atacttagaa taatattctc ttaaataaat tanatttata      2880
     acgttctgga aacgactctc aaatttgggg caacaattag tctgaaaagt ggccaaccct      2940
     tgattactgt gaggcgctcg accgccgatc ggaataaaac taaaatcgtt ggataagcca      3000
     tttttaaaat cggttaaaca aattttcgaa aaatcgtgga ggtagcctga ataagccctt      3060
     agacggctgt gaaatcagat tggcgaaaag ttttattgtt ccgaacgaag cagaagcaat      3120
     attgcttcga cagtcggcag ttttcgtatt ttgcttttgc ttcgactgcg actgccgact      3180
     ttttcagaag cagcagcaaa agcaatagaa acttccagac agttttctag ctgctgcttc      3240
     gactgttgct accgactgaa agcagcagca cagcagcagt cgaaaatcag aaagcaacga      3300
     cttgctgttg cttcgacagt cggcagttct cggattttgc ttttgcttcg actgcgactg      3360
     ccgacttttt cagaagcagc agcaaaagca acagctngta ttaaaaagtt acaggcagtt      3420
     ttttaaacac tg                                                          3432
//
ID   hAT-1_FoCa  repbase;    DNA;    INV; 4986 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4986
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2479-2479 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. 8-bp TSDs. 15-bp TIRs.
XX
SQ   Sequence 4986 BP; 1660 A; 888 C; 930 G; 1508 T; 0 other;
     cagagctcca cgccgccgat ttaacgccgg cgcgccgccg acgccgactc aatttttgac        60
     gccgccgccg ccgatgaaaa cggccggcgc gccgccgggc ataaaattta aaataatgta       120
     aatatggttc ggacgccgag aatttacatg atacacgtgc tgcgtatatg taccccttac       180
     actacactcc aaaaacaatt gatgatgtta ataatgcacg actcaacctt ggatattctt       240
     acacgcattc gaaaagtact ccgcgtactt ttagagcata ttttcaaatt gtatgctata       300
     taaatttaag ggtatttaag gtgaattttt gcgcagtaaa tatgatagta catacatatg       360
     tatttgatat ttattttctg attttttgag gaggaaatcc ttgagaaagt atgtgggaga       420
     aattctgtcg gaattttgtt aagaaattcc ttgaataatt aagaaaaaat tcctgggaga       480
     atttaatcga agaaattctt gaaaaggatt acaataaaat acaatttctt acaataaaat       540
     ctcaaaattt tcatggaagg caaactgggc aaattctcag gtaagctttg tagcaaaatt       600
     tctgcgaatt tggttgaata attttttgat aaatatcgta caaaaaatct aaagttattt       660
     gctagaacaa atcaataatt tttgacaaac aagtttttga gacaattttc aggtacgcag       720
     agtgaaatta ggtggaggac attttgcagg gggaccaaat ttttgggaaa tttctgaaga       780
     gagatttgag gaaaaaactt atgaaattct tgcgcaatga ttcatataat tctgaggggc       840
     aaatttttat gtgattctta gacatgaaat ttgtacggaa attttctagg gttgagttgc       900
     aacaattttc tgggatattt ttgggatgga aatttaatga aaattgtggt gtacaaattc       960
     atcataaatc tagaatcttt tcttccgaag aaaattctgg atggaatttt gcggaagaaa      1020
     ttccagagaa attgtaatat ttttgggtgc tggtcaaatt ataacaaaaa caggtttatc      1080
     gacttaaata acgaaaacaa atttaactcg agcccaatcg gaagaaatat gtgcaagtta      1140
     aaatatgata tccatccatg acaaatattt tttcgaattt aaattttgta tttttaaaca      1200
     aaatactgca ttcatcaacg gattttacga attaaattgt aattatggaa taaatgcaaa      1260
     ttttgttcgc tttggttgag tcattaaaaa gtgacaaagg gacgagtctc aagttgctct      1320
     catcattgtg ggaaaattcc tccacatggt ccagtacgtc tagtgtcgaa gtgcacagtg      1380
     gaatatttac attgaactaa tcgaatatct agcataatgg ccgcccccac tttggatttg      1440
     ccaaatctgc taagatcagg gacattatca gtgctactct catccaatcc aaatagtgag      1500
     gtatggcgat attttggcaa acttgccaat tttggtgaag ttattctaca gaaacaatct      1560
     aaagtgtttt gcaaattatg cctggactct ggaaatttta aggagtaagc caaaattaaa      1620
     tcaattacct ttattaaaaa aaatttaaat cttaaatttg gataggtaca aatcaagatt      1680
     gtaatataat ttaggtattc ttgccacgta agcactggaa atctgcacac gcacctgcaa      1740
     caaaaccacc aaattgacac gaaaactaaa agccatgcga agcaaatgca aaaattgaca      1800
     gcgtattttg aagggacgtc caggccaact caaccttcgg acgagaagtg gaaactgggg      1860
     cgtgaaattt gtctttggtt ctgtagggac cttcttccgt ttcacaccgt cgcaaaaaat      1920
     ggattccaga atttttgttg tcaatatgga atcactaatt catcgcggtc gttaccagac      1980
     gagcaaacaa taggaagtgc ggctttgaac gacgtgtaca atctgacgtt aggaaaagtt      2040
     aaagctgccc tatcctcagc cggagatggc gtgtccataa ctcttgattg ttggacagac      2100
     aattacagaa gaatatctta catcacctac acatgtcact ggatagatga tctttggaaa      2160
     ttgcaaaata tttcacttgg aacttcaccg tttccccatc ctcatactgg cgaggcgatt      2220
     gcagctgata ttcaacaaac tctgaaaaat ttcagcttgg acgggcgaat attccgagtt      2280
     accacggatg gtggtgccaa cataataaaa gcactaaaat tatgtggact ccaacgccat      2340
     ccttgcttgg cgcacggaat gcataatttg ataaaaaagg attttttgga caacggaact      2400
     gaagatttaa aaacctgcag tgaaatcttg aaaaaaatta gagcagttca caggagtcta      2460
     ctttataaat acgatgaact atccagttcc gcaacggaaa ttaaggctag agaagaaacc      2520
     tccgaaactg gtactatttt attcttgcat tgaattaatt tatctccctg aaatgaacaa      2580
     ataaaaatga gatatttttt agaggaaatt cttgcacttg acgatcaata tgacacgatg      2640
     cttttggatg aaaattgcac gggaacattc actactctca agcgcgacgt ccccacgcga      2700
     tggaatagca tccaaacgat gttgacgagc tttttggaaa acagaggtaa tttagatagt      2760
     ttattgagca cttaaccaat ttacaaatct caagatttgt tatttcagcg attattaaag      2820
     acgttctgga gagacaccaa ctgtacgaga agattttatt gcccaatgaa attaaagcag      2880
     cgatagaaat taaaaaagtt ctcgagttct tcgaaattgc tactgatgtt ttgcaaggtt      2940
     ccagttatcc ttctatacat ttgtcacttc tgataagatc tgagatcgtc gacaggtaca      3000
     tttaataaat tattgggcga tgggaaattt aatctgttat atatgcatac atacatatac      3060
     aaatgtattt attagaattt ccatgcaaga tgcggattcc gatttgacta aatcaataaa      3120
     gaaaactttg ttgagtcatt tggagcaccg gtttcctgtt accgaagata tcgtatgtgc      3180
     atgcttactt gatccaggca tgaagcgatt aacaattatt gagacctacc ttgctgaaaa      3240
     gaatcaatcg aagttaaaat tcttaatgca aatgtgcaag tcatatggca ccccggttcg      3300
     tggcgctatt gttcataaag aggtaaattt aattttttct gtattcactt cacacccatt      3360
     tttacaaaat cagaaaaaca tcaaaactaa ttttaaatta attaattaaa tttgtatccg      3420
     ctccaatagg gcgcagagaa tgacgtcaag gatgagccaa aaaccaaaaa gaagaaaaac      3480
     tttgtggaca tcaaaaatga gttgctgaag aaacattctc tggtaatccc tgatgaatcc      3540
     ttggacgctg aagtaaagaa gtaccttctt gtcgccatca gctcggaaga tgtgttggat      3600
     tggtggagga aaaacgaata tggatttcca aatctagcaa atttggccaa gaggttttta      3660
     agcatacaag taactagtgc gccatcggaa cgggcatttt cgacggctgg gttagtcgtc      3720
     acatctcgcc gatcgtcgct gcatccgtta aaagtcaaga agattttgtt cgtgcatgac      3780
     aactatgatg ccatgctcga tatttagtta acagactggt aattatcata tagtcaatct      3840
     aaataaattc tgacaaatgt atactaaatg gatgaagaca acgtttgttt tattcaacca      3900
     taatcaactc tcaatcttat gtgatccaga gttgtcttgc atgtacccat gcaatttcaa      3960
     tgcattactt ttggacgttc cgcagtggta tgtctacttg atcacattct tacatatgct      4020
     catgtccctt gatcgcggcc tattttcgcc tctaactaat caatttacca tatttaattt      4080
     tcagaattaa aatattttgc atgaaactca ttagacagaa ttcaattccc atgaaaatat      4140
     attccacata actcaatttc tacgaaaata ttttgcaccc aatgaagatt ctctatgaag      4200
     attctcaact caatgaagat taaaatattt tgcaaattac tcaatttgca tgaaaatatt      4260
     ttccacaaag ttaaaagtta atactaccgt taagttaaga cgtaaagtta ataattttat      4320
     attatattaa gttcagtgtt cctgctgttt aaaaacacct gcacaaaatt agtgcataaa      4380
     aatgttttca tgcgtttaat aacatccacc aaaaatctgg aaaagtgcac aaaaacaatt      4440
     tagctgatta ccatgcagca acgctgaata tttacgatat tggacgaatc ctaagttatg      4500
     ttacgatgtt tttcattcaa caatattagc aatgtcaacc cattttttaa tatttggaat      4560
     ttagaaatat ttttcgtaat ttccgccttg ataaaatttt aattgttaga aaatggaaat      4620
     gcttgattct tgttgagcgt atataaaagt gaaatatgaa attaatggca ttctgactcg      4680
     atgttcatta ttatgcattt ttgtgcattt tatgcactat gcatgcacaa aaagaaacac      4740
     tgattacgtt ataatggagc gagacaaaac tattactata gaataaagga acttgtaaag      4800
     ttaataaact gacccgcttt actgaactga agagtaaaaa acatcggcgc gccggtgaca      4860
     gaagattcgg cgccgcggcg cgccgccgcc gacctaagat ccggcgcgcc tcggcgcgcc      4920
     gccgccgccg aaggtttccc tcgttcacgc cgccgccgcc gacttttaca tcggcgtgga      4980
     gctctg                                                                 4986
//
ID   hAT-1_HSal  repbase;    DNA;    INV; 1948 BP.
XX
AC   GL448322;
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   hAT-type transposon sequence, single copy.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1948
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator ant genome.";
RL   Direct Submission to Repbase Update (19-APR-2012).
XX
DR   EMBL/GenBank/DDBJ; GL448322; Positions  540093  542040.
XX
CC   termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           51..1898
FT                 /product="hAT-1_HSal_1p"
FT                 /translation="MDIEYGGDFSQQRVEQFQASWLEEDIFKGWLIPHSTE
FT                 NRAICTTCDVTIQCYKTKLIEHSQTDTHIENTHVKNAQNESKTITESATLT
FT                 YENKVKRAEIKLTAFIVEHNIPFHAVDRLIPLIKEICKDPTVISSLSLNLD
FT                 YTGTGTSNMQVTDKCEVDEIDEMTRNLQTCKFSLLMDENTNDSKRILCILV
FT                 RYVSPQDKTVTTQLLTLICIDQTDPVDKFFEEFKNLLKKKRIPLQNIVAVA
FT                 GNNSSMMDGCNSVIKHLQSKMPDIIKLNCIDHSVAIVVDTAYAHIPESCKD
FT                 FIQIVASYISDNVEEFMHLNEFKDTFNAETNKILRSPKKWLVLHKCIVKIT
FT                 GNWVILKDLFLQNFISTENNATDDTSKSIKTLSKQFNNDLIKAYLLFLNYS
FT                 LYFFNDLNMLYQSHKFLSHTFLDNSQQLIRKVAQNFMTANALEDIVNINLS
FT                 NQDNILNIDDIYVGPECEECLKLLSATSAKEIKLNCFNFYASAVTEMLKYL
FT                 PYKDTIFEQLTFLQPKISLYYSGREKFRDLTVIAKCIKHLDITSLAYEWRM
FT                 LPLVYNDTEKEKLALLEIDVMWTEILKSISVIGEKKFPNLELLIESVLSFP
FT                 HSNAQARYILSKFTNIED"
XX
SQ   Sequence 1948 BP; 756 A; 276 C; 302 G; 614 T; 0 other;
     acgaaatgag gttaagttcg gtggtaagta aaaattaaca tttaagaatc atggacattg        60
     aatacggtgg agattttagc caacagagag ttgagcaatt tcaagcatcg tggttagagg       120
     aggatatttt taaagggtgg ttaattcctc attccacaga aaatagagcc atttgtacta       180
     cgtgtgatgt gactattcaa tgttacaaaa caaagttaat tgaacattca cagacggata       240
     cacatatcga aaacacacat gttaaaaatg cacaaaatga aagtaaaaca attactgaat       300
     cagccaccct tacatatgag aataaagtta aacgagcaga gatcaaactg acagctttta       360
     tcgtcgaaca taatataccg tttcacgccg tggatcgttt aataccatta ataaaagaaa       420
     tctgcaaaga tccgacagtt atttcatctc tttcgcttaa tctggattac actggtacag       480
     gtacaagtaa tatgcaagta actgacaaat gcgaagttga tgaaattgac gagatgacca       540
     gaaatttaca aacctgcaaa ttttcccttt taatggacga gaataccaat gattcgaaaa       600
     gaatactgtg cattcttgtg cgatacgttt cgccacagga taaaacagtt acgacacaat       660
     tattaacatt aatatgtata gatcaaacag atcctgtgga taaatttttt gaagagttta       720
     aaaatcttct caaaaagaaa agaattcctt tacagaatat agttgcagta gcaggcaata       780
     attcatctat gatggatgga tgcaattctg taataaaaca tttgcagtca aaaatgccag       840
     atattatcaa gctaaattgt attgaccatt cagtcgcaat tgtagttgat actgcgtatg       900
     cacacatacc agaatcatgt aaggatttca ttcaaatagt agcttcttat atttcagata       960
     acgtagaaga atttatgcat ttaaatgaat ttaaagatac tttcaatgca gagacaaata      1020
     aaatcttaag atcacctaag aaatggttag ttttacataa atgtatcgtc aaaataactg      1080
     gaaattgggt tattttaaaa gatttatttc tgcagaattt tatttctaca gaaaataatg      1140
     caacagatga tacatcaaaa tctataaaaa ctctttcaaa acagttcaat aatgatttaa      1200
     taaaagcata tttgttattt ttaaattatt cattatattt ttttaatgac ttaaacatgt      1260
     tatatcaatc tcataaattt ttgagtcata cttttttaga taacagtcaa caattaattc      1320
     gtaaagttgc tcaaaatttt atgactgcaa atgctttaga agatattgtt aatataaatt      1380
     taagtaacca ggacaatata ctaaatattg atgacatata tgtgggacca gaatgtgaag      1440
     aatgtttaaa attattatct gcaacgagtg ccaaagaaat taagttaaat tgttttaatt      1500
     tttatgcaag tgcagttacc gaaatgttga aatatctgcc atacaaagat acaatctttg      1560
     aacaattaac atttctacaa cctaaaatat cgctttatta tagcggtaga gaaaagttta      1620
     gagatttaac tgttattgca aaatgtataa aacatcttga tattacaagt ttagcttatg      1680
     aatggagaat gctaccacta gtatataatg atacagaaaa agaaaaatta gctcttttag      1740
     aaatagatgt aatgtggaca gaaatattaa aatctatatc cgtcattggg gagaaaaaat      1800
     ttccaaattt agaattacta atagaatcag ttctttcctt tccccactcg aacgcccaag      1860
     ccagatatat tctttcaaag ttcacaaata tagaagatta agtgaatagt atataaaaca      1920
     gtatataaaa tctttttaag aagtttca                                         1948
//
ID   hAT-1_LHu   repbase;    DNA;    INV; 2132 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-2132
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 382-382 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..1648
FT                 /product="hAT-1_LHu_1p"
FT                 /translation="MFXTFLGKYTKFSIADRSTIRNKYVNIVFXETMAKIK
FT                 DAIGNNNIYIVVDETTDTCGRYIANLLIGILNKNYAGKSYLIGAQELDKTN
FT                 NVTISRFVNNCLTRFYLPNAVPSEXVLLMLSDAAAYMVKSAQNLKIFYSNL
FT                 IHVTCLXHGINRIXEEIRNEFLDINRXVNKTKKVFIKAPLRVQHYKDKLPG
FT                 LFLPPQPVITRWGTWLDATLFYAENFETIKEIVCSFFDDSAVITDCKNILN
FT                 KAQLPQELAFIKANYGFISELLTKLETRGMELSESIELIQSFKNRINNVKG
FT                 TIGQRIQTKLEKVLRKNKGFIQLTKISNVLQGNHEESIQISPSIICKFKYA
FT                 PITSVDVERNFSTYKQILSDRRQSFLVENLEKHLIIIIYNSVKN"
XX
SQ   Sequence 2132 BP; 719 A; 312 C; 320 G; 772 T; 9 other;
     tcgagttcaa ctgttgccgg acgtgtcctg acatgttcga ccgtgtttgg tctgcctaaa        60
     agatacagct agtcagttga agctaactaa ttgcactgat cgttttcgtt cctcgtattt       120
     tattttcaat aatgccgaag tcaaatttac ttgtatcgct gtagataaaa gattaccccg       180
     aactctattt agataaaggc agtgtattct gcaaatattg cagtaaaact gtaagttttt       240
     ttttcacgtt ttattatttt tttgtcaatt tattatttat tttaggtawc atgcaataaa       300
     aaatttcaaa taacgcagca tcttggcact agtttgtata aaaataattt aataaaattt       360
     agcacaactt actttaaatc aatcgtttgc ttcaacatct aaaaacaaag aacaggaatc       420
     tttycatttt gacttatgta atgccttaat tagtgcaant attccgctag cgaaattaga       480
     taacacaatg tttanaacat ttttgggaaa gtacactaaa ttttcaatag ctgatcgcag       540
     caccataaga aacaaatacg taaatatagt gtttnaggaa acaatggcca aaattaaaga       600
     tgcaatcggc aacaacaaca tttacattgt tgtagatgaa acaacagata cttgtgggcg       660
     atatattgcc aatttattaa tcggtatttt aaataaaaat tacgccggaa aatcgtattt       720
     aattggtgca caagaattag acaaaacaaa taatgtaact atctcaagat ttgtaaacaa       780
     ttgtttaaca aggttttatc taccaaatgc tgttccaagt gagaangtgt tactgatgtt       840
     gtcagacgct gcggcgtata tggtaaagtc agcacaaaat ttgaagattt tttacagtaa       900
     tttgatccac gttacatgtt tgrcccatgg aattaacaga atagnggaag aaatacgcaa       960
     tgaatttctc gatattaata gawtggtcaa taagacgaaa aaagtattta tcaaagcacc      1020
     gctacgagtc caacattata aagataaact ccctgggctg ttccttccac cacaacccgt      1080
     aattacaagg tggggtacgt ggcttgatgc gactttattt tatgcggaga acttcgaaac      1140
     gataaaagaa atagtgtgtt ctttttttga tgattcggca gtaattacag attgcaaaaa      1200
     tatattaaat aaagcgcaac tacctcaaga gttagctttt attaaagcaa attatggttt      1260
     tatcagcgaa ttgctaacga aactagaaac tcgaggcatg gaactctctg aatctataga      1320
     attgattcaa agcttcaaaa acagaatcaa caacgtcaaa ggtacaatag gacaacggat      1380
     tcaaactaaa ttagaaaaag ttttaagaaa aaataaagga tttattcaac ttactaaaat      1440
     atccaatgta ttgcaaggaa accatgagga aagtattcaa ataagtccct caattatctg      1500
     caaatttaag tacgcgccaa ttacatctgt tgatgtagaa agaaattttt cgacctacaa      1560
     gcagatattg tcggatcgca ggcaatcttt cttggttgag aatttggaaa agcatcttat      1620
     tattattatt tacaattctg tgaaaaatta aatattcaaa atctagtttt gttcaaattc      1680
     aaataatttc gttttgtgtt aatactattt tatatatttt ttgcttaaag ttaatttatt      1740
     tgtttattct attatatttt tgcaattatt tctttctgtg cttttcattt aataaatgta      1800
     tacattgtat attttttgca tcttatgcaa acatctcatt gttagtattt acagttctgt      1860
     aagaaattaa atattctaga tttagttttg tattcaaata agttcgtttt gtgtcaatac      1920
     tattttatgt atttttttcc ttaaagttaa tttatttgtt tattttatta tatttttgca      1980
     attctttctt tctgtgcttt tcatttaata aatgtatata ttgcatattt ttgcatattt      2040
     ttgcattatt tcctaatatt tctgcatatt tttaccaaat tttgtgcata tattcttgtt      2100
     tttgcgtgca tataattccc agctttagtt at                                    2132
//
ID   hAT-1_LMi   repbase;    DNA;    INV; 5872 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5872
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3026-3026 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2071..2160,2211..2831,2862..3089,3224..3403,
FT                 3407..3565,3532..3876,3870..4580)
FT                 /product="hAT-1_LMi_1p"
FT                 /translation="MCGVVRVELDTVFLSFYNFFFCFDCWLTIFVGRHFGN
FT                 YRRKGNVLKTLGRVDKFFAKNVAGSTSSSADDISGTAAVVKKEVNTDETEV
FT                 KNEEKQIVPEFEFHEKLSVESDITKRNNLVSDDPAEWCVNESTIDILLQRG
FT                 INQNYNGDFSTSRRSIGDKTRYLNKNVFYRKLLNGESTLRDYLVYSCSTGA
FT                 VFCAPCKLFGGKAAIATNGIADWKKMFLIFYLITRIHLNTKILSYHSITIS
FT                 SHMLRQKKCTGALCEKGVCSGHVERFHSLHNGQFLMSLELIAEFDPFLAEH
FT                 IERYGNPGGTTSYLSSTICDETRMVNPLNVSFCFYKPGTQSENLAEAVLKV
FT                 FSTIPCITDCKVSYDNASNMSGLHWFAGTHKRNPKAYYVPCAAHSLNLVGT
FT                 SAASCCRKACSFFNVVQNVYNFFSASTQRFLSFFLCFYTALSFMKPGSKTV
FT                 KSLSKTRWSAREEACVSLYENWESVINALTHIANNTFEKPLVRNEASALLN
FT                 QLSRLETVFMMTVWKDILQRFNSVNQKLQSVNIDTKIVHELYESLITVGFI
FT                 ASIRGSFDYYENKAMEIDIDYECTYKRSRKRKLHDDEEADSEEVSLTGREK
FT                 FRVETFLPVLDNLYAELVRRKESYRTLLDSFTVFSNLKNSSPDDISERAAK
FT                 LQASYDTDLEPSFPSECVHFVELLKSSEISDIPVEMSKFLRKERLQSVFPN
FT                 VDIALRIFLCMALTNCSAERSFSALKRLKSYLRSTLSEERLNALTILHIEA
FT                 DLLTDNRLNYEDMINEFSAVKARRKLC"
XX
SQ   Sequence 5872 BP; 1832 A; 1086 C; 1088 G; 1866 T; 0 other;
     cagtggcgga tttccatata ggcacactag gcacgggcct aggggcggca ccttaagggg        60
     ggcggcattt tttgctctgt actgatttta accttttacg ttttaaaata gctgcgctta       120
     caaacgagaa aattttttat tattgttaaa caactgacta gtttaaataa ccctaagaac       180
     gaaattcgac aatacaggct tggatatata catagtttac ttggtgactg actggaaatt       240
     taacattggg tttctgtctg gtatcatctt catgactgat caaaatattt tgaagtaagc       300
     tgtcaggacg gcaatctaca atacaatgtt tgaaacgtta ttattccgag aatgttgtcg       360
     gcttctactt aaccctacca tattttaccc gtgaaaatac cgggacccct gaaaagctgt       420
     gataaactac tcagcaattt cttaaatact gtaacatgtg tggtcctcag tatgtaaaac       480
     acgactctac ttaaatttct tgtagaaatt acggggaagt atcaagtcaa ccctccatta       540
     ctgtaattca tgtgaaagct ttgtgatctt caatatctga gctgtgattt aatgacaccc       600
     gtttaacaag acatgtcgat actgggaatg ttttaaattt ttaaacacat gtttatacca       660
     aacaatataa gcagaatatc taataacgtg tgaaatacac ttcacaacag ttcaaaaata       720
     tttttattta ctttgttact ttttttggcg aaggagtcca acagtgttct atagctttcc       780
     ttcctctcac taattcgggg tacaagttgt cgagaactgg gagaagtgtt tcgactctaa       840
     atttttccct tccagtcaga gaaacttctt cagagtccgc ttcttcgtca tcatgaagtt       900
     tgcgttttcg tgatctttta taagtgcatt catagtctat cacaatctcc atggctttat       960
     tttcataata gtcgcacctg ccacgaataa tgcaatgaat cctacaagtg attcatataa      1020
     ttcatgcact attttagtgt caatatttac actttgcaat ttctgactta cattatcaaa      1080
     tctctggagt atgtccttcc aaactgtcat catgaatact gtttctagtc tgctaagttg      1140
     attcaataaa gctgaagcct catttcacac aagtggtttt tcaaacgtat tattggcaat      1200
     aattgatatc gctctcccag ttttcatata gacttacaca cgcttcctct cttgcttacc      1260
     aacgtgtttt tgataaactt ttgaccgttt tgcttcctgg tttcatgaaa gaaagaagtt      1320
     tatctcagca ttgtgtagaa gcagagaaaa aattataaac gttttgcact acatttggcg      1380
     aaaaaagaag aagaaaccaa ctttgtctca tttattgtgc tgcagcctgc acgatatcag      1440
     agttcccact ctgtgcaata gaatagtacg tggcactgca aattttatat taaacttctt      1500
     aactaagctt tttttttctt agaggaaagg gtatttttat tttatgtgga acaaaaggtc      1560
     catttgcatg tagacttaac agcagtgttc acacaaatga caacacacca catcatctgc      1620
     caacaagact acttaaactt tgtagtctgc cttctctgcc cacagaaacc gctaaaatgt      1680
     tataagaata agtgaaataa gagtcgatcc agcacacctc actgcaagaa gctacaaaaa      1740
     ttatttgctt tttaaattag aaagacagtg ttatgaatat tcagaacata tttgcggctc      1800
     agctaaaatt cctgcgacgc gggaaacaga agctaaaaaa gggaatttct cttttttttc      1860
     ttttttacga gacgaattcc agccggcagg tgtgcttcta ctgttcactg acaacagaga      1920
     aacaggcgca atgaaattaa attattctgc attgttgctc tttcatacac agtaacgtcg      1980
     agtaatccga gtcggtcagt tcatcgctcc gtgtttaaag gaaaaatctt tgtgctcgtg      2040
     gccgtgttta aagtaaaacc ctctgtgttc atgtgcggtg tagtacgagt ggaactggat      2100
     acagtctttc tttcctttta caattttttc ttttgttttg actgttggtt gacaattttt      2160
     taagtgcctt aacatgaata acagtgaaaa aagcaaacgt gcaaaattaa gtggggcggc      2220
     atttcggaaa ttatcgaagg aaaggcaatg ttctaaaaac gcttggcaga gtagataaat      2280
     ttttcgcaaa aaatgttgct ggttcgactt caagtagtgc ggatgatatt tctggcactg      2340
     cagctgttgt aaaaaaagaa gtaaatacag acgaaacaga agttaaaaat gaagaaaagc      2400
     aaattgttcc tgaattcgaa tttcacgaaa aactaagtgt cgagtcagac attacaaaaa      2460
     gaaataacct cgttagtgat gatcctgcag aatggtgtgt caatgaatca acaatcgaca      2520
     ttctcttaca acgtggcatt aatcaaaatt ataacggtga tttttctact tcaagaagat      2580
     caataggcga taaaaccaga tatctgaaca aaaatgtatt ttaccgtaaa cttttaaatg      2640
     gtgaatcaac tttgcgtgat tatctagtgt actcctgtag caccggtgct gttttttgtg      2700
     caccatgtaa attgttcgga ggtaaggccg ctattgctac taatggcatt gcagattgga      2760
     aaaaaatgtt tctaatattt tatctcatca cgagaattca cttgaacaca aaaattctga      2820
     gttatcactc ttaacaagaa aaaagtcact tggaacaata gataaccatt tcgagtcata      2880
     tgttgagaca gaaaaaatgt actggcgcac tgtgtgagaa gggtgtttgc agtggacacg      2940
     ttgaaagatt ccattcatta cataacggtc aatttttgat gtctcttgaa cttatagccg      3000
     agtttgatcc atttctcgca gagcacattg aacgatatgg aaatccagga gggacgacaa      3060
     gttatctttc ttcaacaata tgtgatgaat aatagagctt ctttctgaac gataaaaaga      3120
     ctatcataag tgaaataaaa caggccaaat atttctctat atagtagttt ctactcggac      3180
     atttcacata ttgatcaatt atctttcata ttaagatatg tgaacgagaa tggtgaaccc      3240
     gttgaacgtt tccttctgtt tttacaaacc cgggacacag tccgaaaact tagctgaggc      3300
     cgtactaaaa gtcttttcta caattccatg tattactgac tgtaaggtgt catatgacaa      3360
     cgcaagcaat atgtcaggtc tacactggtt tgcaggcacg cattaaaaac gaaatccgaa      3420
     agcatattat gtgccttgtg cagcacattc tttgaattta gtcggcacta gtgctgcaag      3480
     ctgttgtcgg aaagcatgtt catttttcaa tgtagtgcaa aacgtttata attttttctc      3540
     tgcttctaca cagcgctttc tttcatgaaa ccaggaagca aaacggtcaa aagtttatca      3600
     aaaacacgtt ggtcagcaag ggaggaagcg tgtgtaagtc tatatgaaaa ctgggagagc      3660
     gttatcaatg ccctcacaca tatagccaat aatacgtttg agaaaccact tgtgcgaaat      3720
     gaggcttcag ctttattgaa tcaactcagc agactagaaa cagtattcat gatgacagtt      3780
     tggaaggaca tactccagag atttaatagt gtaaatcaga aattgcaaag tgtaaatatt      3840
     gatactaaaa tagtgcatga attatatgaa tcactgtagg atttattgca tctattcgtg      3900
     gcagtttcga ctattatgaa aataaagcca tggagattga tatagactat gaatgcactt      3960
     ataaaagatc acgaaaacgc aaacttcatg atgacgaaga agcggactct gaagaagttt      4020
     ctctgactgg aagggaaaaa tttagagtcg aaacatttct cccagtactc gacaacttgt      4080
     acgccgaact agtgaggagg aaggaaagct atagaacact gttggactcc ttcacagttt      4140
     tcagtaacct taagaacagt tcacctgacg atatttccga acgtgcagca aaactccaag      4200
     cgtcctatga cacagattta gagccttcct tccctagtga atgtgtacat ttcgtggaac      4260
     ttttgaaatc ttctgagatt agtgatatac cagtcgaaat gagtaaattt ttacgaaaag      4320
     agaggttaca gtccgtgttt ccgaatgttg acattgctct tagaatattt ctttgtatgg      4380
     cacttacaaa ttgttcagca gaacgctcgt tttcggctct taaaagactg aaatcgtacc      4440
     tacgttctac gttgtccgag gagagattga acgccttgac cattcttcac atcgaagccg      4500
     atctcctaac tgataaccgt ctgaactatg aagatatgat caacgagttt tctgccgtca      4560
     aagccagacg caaactttgc tgaccggtga gtgttttttt tttttatttt tttttttttt      4620
     tttaattcat actagtttta aaaatttaag attataatgt gatttttatt ataacttaga      4680
     gcacattcat tggatttaca aactacgtat tacctgttta ttttacaact gccgatggca      4740
     gaaagccgaa ctaagcctcg tttacgtgca gacgtgaccg aaggcgcccg acaatacccg      4800
     aatgacccag gccgctcgga gctgtacagt caagtcatac tgatactgta gtatatttat      4860
     tacaactgaa gcatattctt ggcgtctgct gaaatgtata gttatcgcgg aaatatacgt      4920
     tatcggagag tacgctcaga tgaaaaagtg ttaacaaata acgtagttca gttctgtcga      4980
     taaatacgta aaagctttgc taatactgtt agctatcgtg agagcagtag ctgcagtaca      5040
     aaactgttta gcccttacat ggattaaagg tattgtgtac acgtattatg cagcatctag      5100
     ctacacagac cctaatgctt tacacgttaa ctattagatt ataaaacaaa tttgattttt      5160
     ccacactagt ctgtaaaatt atgtaatggc aaacccagtt ctgtgttttc gtctgtatta      5220
     agttattagt tcgtgcaccg aaacctctaa ttcattttca tttcttacgc tttcctctag      5280
     attcacgtat taataccgaa tgttttcttt atctgctaca cattcaagtt attagatcgt      5340
     aaaacgacag tttaatttta attttgaacg catctctgta aaaatacgta ttaatttcta      5400
     atgtatgaca cgttcgcttc aatttttaga tcgtaacatt ttcattttca accgtttcgt      5460
     gtaaaagaat atataaaagt aatgtataac aaaaatcagt tgtctcctac acgttctgct      5520
     gaatttttag gccataaaag aaaagttatt ttccttgtgt tcgtttctgt tgtctttcga      5580
     cagaagaatg tgttaacaca atgcagcttt aagtttgttt ttagtttgtt ttatccgctg      5640
     ctttacacca agtacagttc aggaaccata ttacactttg attgagcgcg actagaccgc      5700
     tgatgtgtcc ttcagaacaa cgaatagcag agtacggaaa tagctcccag cgctcccagc      5760
     caaaacggca attgtgaact gatcgggtaa tagttattac ttaaaacatt gtttgggggg      5820
     ggcgcacata atatggtgtg cctaggggcg aaaattttta aatccaccac tg              5872
//
ID   hAT-1_PBa   repbase;    DNA;    INV; 3183 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3183
RA   Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 649-649 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1303..2892
FT                 /product="hAT-1_PBa_1p"
FT                 /translation="MFLHKKFFIRYITFNKDIILIQEEESELSKPALYASY
FT                 KIAHLIARESRPFSIGPFVKQCLEIAAETIYPNDINKFKSISLSSRTVVRR
FT                 IEKLAEDLERQLVLKANNFIAFSLALDESTDIVDTAQLAIFIRGVDSNLSI
FT                 TEELLNIIPLKGTTTGEDILFSVEEAIENINLSWDKLTSVATDGAAAMIGH
FT                 NMGFVGRLKSKLAQSKQEIHSIHCIIHQEALCAKSLKYDEVMKIVIKVVNF
FT                 IRTTGLNHRQFREFLSSLESDYTDISYFCETRWLSRGKTLQRFFHLREEII
FT                 IFLEMKDKSVPELSQPSWIANLAFLADITNHLNTLNYSLQGKDKLIIHMFD
FT                 QIRSFKMKLNLWINQFQSRQLLHFSNLLSVAMHIQDKQYEEYINSLQLLHN
FT                 EFDCRFREMHVLEEDLLIFMTPFTVDINIVPADIQLELIDLKCDTALKNRF
FT                 YTMTDIVQFYSYISQERFPRLHARAAKIMSMFGSTYSCEQLFSIMKLNKSR
FT                 LREQLTDSHLNFAIIRLSCAKTITPDISYIISEN"
XX
SQ   Sequence 3183 BP; 1149 A; 494 C; 464 G; 1076 T; 0 other;
     caggggtcgg caaaacgctg aaattgagca cgggcgcccg cgagcgcccg cgagcgctcg        60
     cctgttgtgc acatctcagg agcgtatcta atatttttag taccttggga taaagttccg       120
     catttcacac ttacaaaaat agcgttgcgt gtatatatga acgatagtgt agtcttaaac       180
     tactagtact tgaatctttg taacatcata aaattttttt ataacagttt agctaaaccg       240
     tttaaagatg aaatatgcaa aaatatattg taatatatat aggacttaaa atgcataaat       300
     tcttatgaat tcaacttata tctagttaat ttttttatta gtcaaataaa gaaatatgct       360
     ctagcatgtt ttgattgtcc taataataat aataagcatt cattatagga aaattttaat       420
     taaaatgctt atctctattt ttaaatattg taagttgtca aaatttgtgc taaattaaaa       480
     attatataat taatacattt aaatatgttt aacgaaaatt taaatataac aaagaaaata       540
     aaacaataat ataaacaata acaatgtatt aaaatataaa cttacaatac aaccataaaa       600
     ttatgaatac atatatcacg tttaacttag cgctttaaaa ttatattttt aaatccagaa       660
     gaatagtcct ttttctgcga agaaaacttc caacaatttc aaaataaaca tctgctaata       720
     ttaatctgct aaacgctcaa aataaaagaa aaacaataac taagcaagag tataatcaaa       780
     ttgtctcttg tctagaacag tcagacacat ttgcaatctt ataatttaac gtttgtaatg       840
     gataatcaaa ggaaaagaac cttaagttca agttcggaca gttcttcatg ggaagagaag       900
     tggttcataa tgaagcatga taatcaagcg caatgtttga tctgtggaac cattatgaat       960
     tcaaagaaat ataatgtcgg aagacattat aacacaaaac atggagccac ttatgacaag      1020
     atagaaggat cggagcgaat tcaacttttg cacgatttaa aatcagctgt ttccaacaat      1080
     aaagtaattt tcataatata catactatta taatataaaa tatgcgtttt ttactgtagt      1140
     cagttttaat ttaattcatt atatttaatt atacccggta aaaaattttt cgtataagaa      1200
     catatatgca tataaacatg tataaatata tataaaatat aaatataaat ttatatacat      1260
     aatatatata atatatatat atatatatat atatatatat atatgttttt acataaaaaa      1320
     ttttttatca ggtacattac atttaataaa gatattattc taatacagga agaagaatcg      1380
     gaattaagta agcctgcatt gtatgccagt tacaaaattg ctcatcttat tgcacgtgaa      1440
     tcacgtccat ttagcattgg tccatttgtc aaacaatgtt tagaaattgc cgcagaaaca      1500
     atatatccta atgatattaa taaatttaaa tcaattagtc tctcttctcg aactgtagta      1560
     cgtcgcattg aaaaattagc tgaagatctc gagcgacaat tggtactaaa agcaaacaat      1620
     tttattgctt tttcattagc tctcgacgag agtactgata tcgttgatac tgcacaattg      1680
     gcaattttta ttcgtggtgt ggatagcaac ctctctatta ctgaggaact tttaaatata      1740
     atacctctga aaggtactac gactggagaa gatatattgt ttagcgttga agaagcaata      1800
     gaaaacataa atctatcttg ggataaatta acttcagttg ctactgatgg tgctgcagca      1860
     atgattggac acaatatggg cttcgtagga cgtttaaagt ctaaactagc acaatcaaaa      1920
     caagaaatac attcgatcca ttgtatcatc catcaagagg cattatgtgc aaaatcttta      1980
     aagtatgacg aagtaatgaa aattgtaatc aaagttgtaa attttattag aactactgga      2040
     ttgaatcatc gtcaatttcg cgaattttta tcttctttag agtcagatta taccgatatc      2100
     tcctattttt gcgaaacacg atggcttagt cgaggtaaaa ctcttcagcg tttctttcat      2160
     ttacgcgaag aaataattat atttttagaa atgaaagata agtctgtgcc tgaactatca      2220
     cagccttcct ggattgccaa tctcgccttt cttgcggata tcactaatca tttaaataca      2280
     ttaaattact ctttacaagg caaagataaa ttaattattc atatgtttga tcaaattaga      2340
     tcttttaaaa tgaaacttaa tttatggatc aatcaatttc aatctcgaca gttgttgcat      2400
     ttttcaaatt tattatctgt tgccatgcac attcaagata agcaatatga agaatatata      2460
     aattcacttc aattattaca taatgaattc gattgtcggt ttagggaaat gcatgtttta      2520
     gaagaagact tacttatttt tatgacacct tttactgttg atattaatat tgttcccgca      2580
     gatatacaat tagaattaat agatttaaaa tgtgacactg ctcttaaaaa tcgtttttat      2640
     acaatgactg acatcgtaca attttattca tatatatctc aagaacgttt tcctcgacta      2700
     catgctcgtg ctgcaaaaat aatgagtatg ttcggttcta catattcatg tgaacaatta      2760
     ttttctatta tgaaattaaa taaatcgcga ttacgcgaac agttaacaga ttcacatttg      2820
     aattttgcaa taattcgttt aagttgtgcc aaaacgataa cacctgatat atcgtatata      2880
     atatcggaaa actgaatatg aatcaaatac taattaaatg ttataagagt tgcttattta      2940
     atattattgt aagaattgtt tatttaaaat atagatagtt attaatttat gctaattctg      3000
     ggtctgaatt tgtgcaacac aatatttttt tactccttga acagcacgtt caatgaacag      3060
     acgttcctgc tatcccctct cctcacttta ttgcgcctag ccgcctaacg ctagccccag      3120
     cgcgctcgac tgttgcccgc gggcattggg cgcccgcgag cagtgcccac ttgccgaccc      3180
     ctg                                                                    3183
//
ID   hAT-1_RPr   repbase;    DNA;    INV; 2264 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 20.10, Created)
DT   02-JAN-2012 (Rel. 20.10, Last updated, Version -1)
XX
DE   hAT-type DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2264
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3334-3334 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           462..1940
FT                 /product="hAT-1_RPr_1p"
FT                 /translation="MPRTSASNKQLVAKYLREFPAELFRSDGDILYCTACD
FT                 KRVSCSQRSQVTQHIATGSHIENKNRKKERTSYQAFLTSPSSSKSTLSTDL
FT                 CRALVRADIPFHKLKNPHFKGFLETYIGKKMPDESALRKNYLEDIYKDTLT
FT                 KIREHIKDGPIWVSIDETTDVEGRYIANAVIGKLDSDADVDSKPFLLNCEV
FT                 LEKCNHSTISRFFDASMHILWPSGVLNEKVLLFLSDAAPNMVKAGQSIQVF
FT                 YPKIIHVTCIAHALHRVAETVRSLFSDVDSLISSVKKVFLKAPSRIKMLKD
FT                 LYPDLCLPPEPILTRWGTWLEAAQYYYENYNKIKNVLSHLEDEAVAINTAK
FT                 SLFEKPNLRNDLAFISDNCVFLAQAITQLESQNVRLTENVSNVKKVIEKVE
FT                 GIPGSKGDLIRSKLVEVLSKNKGWETICQISDIISGTEVTSEHRVPFTTNE
FT                 ITSFSKAPITSVDVERSFSRYKSILRPDRRHFTFQHLKFHVVANNFEE"
XX
SQ   Sequence 2264 BP; 727 A; 429 C; 397 G; 711 T; 0 other;
     ggaacggatt cgtatgtatt tacatatttt tttctaggca atttacagac gtttttcaac        60
     tagaagtatt catactgaca ctttttaagc cgtttgagtc tacttttatt tcacatattt       120
     ccacatattt ggatgttatc gcatatttat acatatttga ttaaaataaa taaatatttc       180
     tacatattta atcaaaatat gtacatattt tttcatattt ttcattttgg gcatattttc       240
     ataattggga ggtggttgac aggaactgtg aaccacagac tgtagggctg tgaatcacag       300
     tgggtacaat ggttattgta atttacacag aatgctgcta aacagtgacg ggcacttgtt       360
     agttctttga agttgtctga cgttgtctgt tctttcagct cgttcgttga agtgtccaat       420
     tcatttcgtt cggtcactta gtgtattctt ttttgggtga aatgccacga acatcggcct       480
     caaacaaaca actggttgct aaatatcttc gcgagtttcc agcagaactt tttcgaagtg       540
     atggagacat tttgtactgc acagcttgtg acaagcgcgt ttcttgctct caacgttccc       600
     aagtcaccca acatattgcc accggatcgc acatagagaa taaaaacaga aagaaagaga       660
     ggacgtccta tcaagccttc cttacatctc catcatcaag taagtctact ctgagtacag       720
     atctgtgtcg ggctttggtt agagcagata tccctttcca caaacttaaa aatcctcatt       780
     tcaaaggatt cttagagacc tatattggga aaaaaatgcc tgacgagagc gctctgcgga       840
     aaaactacct ggaagatatc tataaagata cactaaccaa aattcgagaa catatcaaag       900
     atggaccgat ttgggtgtca attgatgaaa ccactgacgt tgagggcagg tatattgcca       960
     atgcagttat tggaaaactt gacagtgatg ctgatgtgga ttcaaagcca ttccttttga      1020
     actgtgaggt tctcgaaaaa tgcaatcatt ccaccatttc acgattcttc gatgcctcaa      1080
     tgcatatcct atggcccagt ggagttttga acgaaaaagt tcttttgttt ctctctgatg      1140
     ctgcccccaa catggtcaag gctgggcaat ctattcaggt attttatcct aagataattc      1200
     atgtgacgtg tattgctcat gccttgcatc gagtagcaga aactgtccga tctttgttca      1260
     gtgacgtaga ttccttaatc tcctcggtta aaaaagtgtt cttaaaagca ccaagtcgca      1320
     ttaaaatgct aaaagatctc tatccagact tgtgccttcc accagaacca atattgacaa      1380
     gatggggtac ttggctggaa gcagctcagt attactatga aaactacaat aaaatcaaga      1440
     atgtcctttc acatctcgaa gacgaagcag tagcgataaa tacagccaag tctttattcg      1500
     agaaacctaa tttaaggaac gaccttgcat tcatttctga caattgcgta tttcttgcac      1560
     aagccattac ccaacttgag tcccaaaatg ttcgactgac agaaaacgtg tccaacgtta      1620
     aaaaagtcat cgaaaaggtg gaaggaatac ctgggagtaa gggagatctg atcagatcaa      1680
     aactggtaga agtactgagc aagaacaaag ggtgggagac catctgccag atttctgata      1740
     ttatcagtgg aacagaagtc acctcagaac atcgtgtacc ctttacaacc aacgagataa      1800
     cttctttcag caaggcacct ataacatctg tagatgttga acgatctttt agtcgttaca      1860
     agtccatctt acgcccagat cgtcgtcact ttacgttcca acatttgaaa tttcatgtgg      1920
     ttgcaaacaa tttcgaagag tgaagttttc aaaattgaaa atttaacaca tctttttata      1980
     aatagtaaaa atgttctttg ttgtataaat cattataact tgtaaaaaca aattattttg      2040
     ttcctaataa attattataa attgtaaaaa tgttcttttc ttgtataaat aattataact      2100
     tgccccccaa aaaaaaatcc attttcataa aaaaaaatgt ccattttact taaatattcc      2160
     agaaaatatt ttaagaaaat cacatatttt ccacataatt gacgaaaata aatgcatatt      2220
     ttaattaaat atttggcatt tttaaataca taaaaatccg ttcc                       2264
//
ID   hAT-1_SIn   repbase;    DNA;    INV; 2862 BP.
XX
AC   .
XX
DT   21-NOV-2011 (Rel. 19.02, Created)
DT   21-NOV-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   hAT-type transposon sequence - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2862
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 352-352 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. ~70-bp TIRs. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(236..1372,1710..2213)
FT                 /product="hAT-1_SIn_1p"
FT                 /note="transposase."
FT                 /translation="MESGKRKKVCKRKFRRAWLDENAFKGWLAPSEHDNKA
FT                 LCKMCNITLKCCRYNLLRHAESASHIDNVNSANVEIDSSIEESVSHSDKVK
FT                 QAEIKLAAFFAEHNVAFSTVDHLIPLLKDVCVDPEVVQDIALARTKCTQIV
FT                 KNVIARREIEKIVEELKISKFSILLDESTDISDTKLLCILVKYISSLNKKV
FT                 VTQLFALLPLDATNCSAENLYETFKKYFSDFQISLQNLVGMASDNASVMIG
FT                 CNNSFLTHLKVDVPHVILLNCICHSAALIASKASEKLPRSCESLIRSITTY
FT                 VSGSAKQSTILREFQDFFEVERTKMLRLAKTRWLVLHQCVVRLLDNWEPLK
FT                 HYFILAVSEDKLESAEIILSQLHNNDNKAYLLFLKYLSFLDPKVAFSCKAR
FT                 ATFKDLSVIAARLVNINITQLAFEWRVLPRRFTDEQKENLASLDIDEMWAK
FT                 ILECEDDDGNKFFPNLTKLVQAVLSLPHSNAEAERIFSIVADVKNKKRNKL
FT                 GNNTVSAICVARSSFQADNINCVNFEIDSRHLELHNSANLYTTQNDTNDH*
FT                 "
XX
SQ   Sequence 2862 BP; 955 A; 406 C; 513 G; 985 T; 3 other;
     cagtgatgcc agagatgccc cgcactcgcg catgcgcgtt agtttacagc tgagagcagt        60
     actgtagcta taaataacgg tgtgggggac atgaggtttg cgcgccaaaa ccgttggtta       120
     gattcatcgg gacgggttga tgctgagcag gaggcatggg gaatcctaag aagaaaatat       180
     aagtaggtaa taggaatccc aagaagaagg taaggtaaaa atatgattaa gcataatgga       240
     atcgggtaaa aggaaaaagg tttgtaagcg aaaatttaga agagcttggt tagacgaaaa       300
     tgcatttaaa ggttggttgg ctccatcaga gcatgacaat aaagctttat gtaaaatgtg       360
     caatattact cttaaatgtt gtcgatataa tttattaaga catgccgagt cagcttctca       420
     tatagataat gtaaatagtg ctaatgtaga aattgatagt tcaattgaag agagtgtttc       480
     acattccgac aaggtaaaac aagctgaaat taaattagct gcttttttcg cggagcataa       540
     tgttgctttc tctacagtag atcatttaat tccgttgttg aaagatgtat gtgtagatcc       600
     cgaagttgta caagatattg cactggcacg gactaaatgt acacaaattg taaaaaatgt       660
     cattgcgcga cgagaaatag agaaaattgt tgaagaatta aaaatatcta aattttcaat       720
     tttactagac gagagtaccg atataagtga cacaaaactt ttgtgtattc tcgtaaaata       780
     tatttcatca ttaaataaga aagttgtaac tcaattattc gctttgctac ctcttgacgc       840
     tacaaattgt tccgcggaaa atttatatga aacttttaag aaatattttt cagattttca       900
     aatttcctta caaaatcttg ttggaatggc aagtgacaac gcatccgtca tgattggatg       960
     taataattct tttttaactc atttaaaagt agatgttccg cacgtaatat tattaaattg      1020
     tatttgccat tccgccgcgc ttatagctag taaagctagt gaaaaattac cgcgatcttg      1080
     cgaaagctta attagaagta tcacaacata cgtgtccggc agtgcaaaac aaagtacaat      1140
     tttacgcgag tttcaagatt ttttcgaagt agaacgaacc aaaatgttga gattggcaaa      1200
     aactagatgg cttgttttac atcaatgtgt tgtcagactt ttggataatt gggaaccttt      1260
     aaaacattat ttcatattag cagtctcaga ggataaatta gaatcagccg aaataatttt      1320
     aagtcaatta cataataatg ataataaagc atatcttttg tttctaaaat atgtattaaa      1380
     tttttttaat tcttttaatg cacttttttc agtcacgtgc aattttaatt cataaattat      1440
     ttagcaagag tcaaaaatta attacggaaa tagcagacaa ttttatgatt ttcgaagcta      1500
     tagaacaaat ttccctttta aacccagatt ctgacgaaca attaaaagat ttgcatgaaa      1560
     tttatttagg gccggaatgt gaagcatttt tattaaatga acctcaggaa cgcactcaag      1620
     aaatttgacg aaattgttta gaattttaca aaacggcagt tcgcgagatg attaaacgtt      1680
     taccttacaa ggacacattt ttcgaacagt taagcttttt agatccaaaa gttgcttttt      1740
     cttgcaaggc tagagccact ttcaaagatc ttagtgtcat agctgcacgg ctagttaata      1800
     ttaatataac acaattagct tttgaatggc gagttttgcc acgtagattt acagatgaac      1860
     agaaagaaaa tttagcatct ttagatattg atgaaatgtg ggctaaaata ttagagtgcg      1920
     aagatgatga cggcaataaa ttttttccaa atttaacaaa attagtacaa gcagttcttt      1980
     ctctcccaca ttcaaatgct gaagccgaac ggatattttc tattgtagct gatgtaaaaa      2040
     ataaaaaaag aaataaattg ggaaacaaca cagtttcggc tatttgtgtc gcaagatcat      2100
     cttttcaagc agataatatt aattgtgtaa attttgaaat tgattcgcgg catttagaat      2160
     tacataatag tgcaaattta tatacaacgc agaatgacac taacgatcat taatatttat      2220
     tatatttagc tttattttat taattatatt tttatattgt ttattattaa aatgtgcgtt      2280
     ctataaggtt cgtttagtaa ataatattgc attaatatat ttattacgtg atatttacca      2340
     aactttattt ttctagagac gtgatgcaat cgtcctagtc atctgaattt ttatttatcg      2400
     catagattac gttgattttg tttcatatat atattttttt ttgttacaag tgaaatgtta      2460
     ttaatttgtt tttgttataa atgaaatgtg accgatttta ttttcgctgc tatatttatg      2520
     ttttgttaga atactggtaa ggtttttggc aggtttccct tacccttgca agaaatcttg      2580
     gtattcatag tttcctgccg aataaagtaa ttatttattt tttatttaag gaatgtgttt      2640
     tatttgtamg attatttcag cacctatcct tttgttataa tttagccaca taattatttt      2700
     aacctaatta gattatagtg ttaagagtta tgtcatatta tgtccataak tctatttttc      2760
     tttggggaga ctaaggacgc cagtttcacg aatggtttag atactktact ggcgttacaa      2820
     actctgcaca tgcgcgagtg cggggcatct ctggcatcac tg                         2862
//
ID   hAT-1_TCa   repbase;    DNA;    INV; 2996 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2996
RA   Jurka J.;
RT   "Mariner/Tc elements from insects.";
RL   Repbase Reports 9(3), 678-678 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(582..1367,1270..1734,1685..2728)
FT                 /product="hAT-1_TCa_1p"
FT                 /translation="MNPQYDSVVLLLNIPFSRRKEIEKRQILELGRPTPRL
FT                 CMVKLAGSHSRSFQNSWYASHXWLCGSIFKESLFCWPCLLIGNVKNVWSSG
FT                 NGFKDLKNFSRGVKLHEASKEHIKNCIGLKRIEKNTLSVAEALQEHSNFNK
FT                 ILFNENVRKNRLLIAYLIDVTLLLGKQELAFRGHSETESSVNQGNFREIFQ
FT                 VLIKRNTELTEHVSKFSNIFXGQSKTIQNELISCISDHLREHIFNEITSTN
FT                 FFCNCGRYNRCYRKIAVLSYNGNIYLMKLQAQIFFVIADDTTDVTEKSQCS
FT                 LTIRFVNNATIQERFFGFFDVSADRSAESLYLVLMNALNRFDIKNKLVAQS
FT                 YDGAAVMAGELNGLQAKVKSVGPQALFTHCCAHRLNLVLQQGTXCISKCRI
FT                 FFATLVGIPSFFLSIAEKNICFKVFRXFFYQSPKRTFVLNNIIGKSIPRAG
FT                 ETRWSTRSKIISLVSAEWNNFICVFEEIMNNSTSGAESIRMAKGFLKNFSD
FT                 FEFAFLTFVFNDIFXITDVLFQILQKKVLNISYCQDRIKDTENRINTLRTE
FT                 VFKKIFNIAKNFTGLPSNKRNSSSNEIELFNEYKVLFYEILDYIXMQLNTR
FT                 FQDFEKLSFFSLVDSSQFSEFDKKFPSSFLTKLNSIYPNIFDLSRLENELA
FT                 VIYRDSQFSEAEPIKILELLDSDYKDVFSEVRKLLMIILTIPATSVSAERS
FT                 FSCLKRIKTYLRNSIGQDRLNDLAFXSIEKELLNDMSKNPNFYEEIIDKFA
FT                 DLKEXRIDLIYKK*"
XX
SQ   Sequence 2996 BP; 951 A; 474 C; 541 G; 1011 T; 19 other;
     cagtggcggc tcgtcagatg aggcaactga ggccgggcct cagttaattg aaacgatttt        60
     tttacataat tttgtttttt ataattatta tcaatcaatc attatttaaa tccaaattgc       120
     ttcctagtgg agagaatttt cgttaaaaaa tgttccagtt ccgaacatgc ttccacttta       180
     acgtttcaca cccagcattc ttgtccaacg ccagcgctaa ggtatcatcc tgtttcatct       240
     aaagagatgt gaggcagaat ttttcgagcc tcagtttaag agttttgcgc atgcgcagta       300
     aggtctgtta aagcgaaaga gaagaaacat gcatcaatgt ttcttctttt atttgaggct       360
     gagatttcgg agcctctcgg cactctcggc gtctcggcga acatcgtcgt cgggaatcag       420
     acttaaggaa tgcttaagga taaaatttcc tatttgctta tctctgtctg gatgttaaat       480
     cggcaccaga tcacgtccac tgcagcagtc agtcttgtat tgtcagatag cattggtgta       540
     gatgagtagg tgtttaggaa tcaggaaaag gtaagatcaa gatgaatcct caatatgatt       600
     ctgtagtact gttgctaaat ataccatttt ctcgacgtaa agagattgaa aaacgtcaaa       660
     ttttggagtt aggaagacca actccacggt tgtgtatggt caaattagct ggttcacatt       720
     cgcgatcttt tcaaaattcg tggtatgcta gtcatanttg gttatgcggt agcattttta       780
     aagaaagttt attttgttgg ccgtgcctgt tgattggcaa tgtaaaaaat gtgtggagtt       840
     cgggcaatgg tttcaaggac ttgaaaaatt tttcacgcgg ggtaaagtta cacgaagcat       900
     ccaaggaaca tataaaaaac tgcattggtt taaaaagaat tgaaaaaaac acacttagcg       960
     tcgcagaagc attacaagaa cactctaatt tcaacaaaat tctattcaat gaaaatgtta      1020
     gaaaaaacag actcttaata gcatatttaa tagatgtaac attgcttctt gggaagcarg      1080
     aactggcttt tcgtgggcac agtgaaaccg agtcgtcagt taatcaaggt aattttcggg      1140
     aaattttcca agtcttgatt aaacgtaata cggagctaac tgaacatgtt tctaaatttt      1200
     ccaatatttt taycggtcag tcgaaaacaa ttcaaaatga attaatttct tgtataagtg      1260
     atcatttaag ggaacatata tttaatgaaa ttacaagcac aaattttttt tgtaattgcg      1320
     gacgatacaa ccgatgttac agaaaaatcg cagtgctctc ttacaattag atttgttaat      1380
     aatgccacaa ttcaagaacg tttttttgga ttttttgatg tgagcgctga tcgatctgcg      1440
     gaatctcttt atcttgtttt gatgaatgct ttaaacagat tcgatattaa aaataaactt      1500
     gtggctcaaa gttatgacgg tgctgccgtt atggctggag aacttaatgg tctgcaagcc      1560
     aaagttaaat cggttggtcc acaagctctg ttcactcatt gttgtgccca tcgattaaat      1620
     ttagttttgc aacaaggtac aaawtgtatt tctaaatgta gaattttttt tgctaccctt      1680
     gtaggtattc cgtcwttttt tctatcaatc gccgaaaaga acatttgttt taaataacat      1740
     aattggtaaa agtataccga gggctggcga aactcgctgg tctacacgtt caaaratcat      1800
     ttccttagta tccgcagaat ggaacaattt catttgcgtt tttgaagaaa ttatgaacaa      1860
     ttcaacatca ggagcggaat ccatacgaat ggcaaaagga tttttaaaaa atttttctga      1920
     ttttgaattt gcatttttaa cattcgtttt taatgatatt tttgmwatca ctgatgtgtt      1980
     atttcaaatt ttacaaaaaa aagttttaaa catttcttac tgtcaagatc gcattaaaga      2040
     tacggaaaac cgcataaata cactaagaac agaagttttt aaaaaaatat ttaatatagc      2100
     aaaaaayttt actggtttac cttctaataa acgtaacagt tcytccaacg aaattgaatt      2160
     attcaatgaa tataaagttt tattttatga aattttagat tatattawaa tgcaattgaa      2220
     tacgagattt caagaytttg aaaaactttc wtttttttct ttagtagatt catcacaatt      2280
     ttcagaattt gacaaaaaat ttccttcttc atttctaaca aarttaaatt ctatttaycc      2340
     aaatattttc gatctaagtc gtttagaaaa tgagttagcg gtcatttacc gtgattctca      2400
     attttctgaa gcagagccca taaaaatttt ggaactcctt gactctgatt ataaagacgt      2460
     cttttccgaa gtgcgaaaac ttttaatgat aattttgaca attcccgcaa ctagcgtttc      2520
     agcggaaaga agtttytcct gtytaaaacg tattaaaaca tacctgcgta actccatagg      2580
     acaagatcga cttaacgatt tggcattttt ktcaatagaa aaagaattac ttaatgatat      2640
     gtcaaaaaat cccaactttt atgaggaaat catcgataaa tttgccgatc taaaagagmg      2700
     tagaattgat ttaatttata agaaataaat ctttaattat atagttagga ttttgttttg      2760
     ttttttgttt gtttttgttt ttgattttat aagaattttt attttatttt aatagcaaag      2820
     aaaaaagtgc tttgagcggt ttacgggtaa agtagggctg tcgtggcgat gactccctta      2880
     aaaagtcaac gtgttgggca gattacctca tgggtgacat ggaaatatct gcaattaatt      2940
     tgttgcttct ggtttctctt ggcctcacct gactcgagag tcacgagccg ccactg          2996
//
ID   hAT-20N1_DTa repbase;    DNA;    INV; 445 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-20N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-445
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6224-6224 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 445 BP; 128 A; 74 C; 93 G; 150 T; 0 other;
     tagtgttggg ttgctcatga gtgagtgaac aaaaaagagt tgctcactaa actgagtgag        60
     tgaacatgtt ccttcgaact tgttctttat tgttcacttg ttcatttttg ctcacttgct       120
     cttttttgtt cacttgttca gtttggctct cttatttgat ctttttagtt cacttgctca       180
     gttgctctct tgctgttttt ggcacaaaaa gtattttttt ttacttttag gatgcatttt       240
     gcatacggtt ttacagacaa tgagctgttt tctcagagcc agtgaaaaag ttaaggacag       300
     aacaagtgag caagtgaaca agtgagcaag aacaagtgaa caagtgagca agtgaacaag       360
     tgagcaaact gagtgagttg actcattggg aaaaaaagaa caagtgaaca tgttcaccca       420
     aatgagcagt ttttacccaa cacta                                             445
//
ID   hAT-20_DTa  repbase;    DNA;    INV; 2572 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-20_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2572
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 3'-end truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(66..749,718..1836)
FT                 /product="hAT-20_DTa_1p"
FT                 /translation="MFLRTCSLLFTCSFLLTCSFLFTCSVLLTCSVLLTCS
FT                 FLFTCSVLVFLFTCSVSLWGFWHFAYGHTGNQLFSQSAQTCSFFRLLFQIL
FT                 NKMSARKYSEIWSHFEDLGDLQAKCKYCKTTLSCKSQSNLSRHLKNRHPAA
FT                 LEPVVRQNEEEQDAIAVKSAQPKITTFAQRPVSQNKMHCLDTQVVRMIAKG
FT                 QHALRLVDEPDFKKLISDVSNCPGYSLTNQCVNSKTTRRTNVLIPKLRDEV
FT                 MEKILEKLREATAVCLTTDGWTSLTNECYMAVTVHFIDKESTSLCSYIIAC
FT                 RSFPLRHTSENLCAFLEAIILEWNLKNKVVAKTSDNAANIVKAIHNGNWNH
FT                 IGCFAHTLNLITLTVAQLVLRSWRRCRYCFNCHSLKLSKTSQHATFKMFER
FT                 LLLLKDAVMATLSTLRIDLLLSSEDWEVIEGVLPVLKTFFQITTEISFESN
FT                 VTLSKVIVLSGILKDKIASMMTLATNKEIVSFIECIQHETNSRFHDYESNE
FT                 LYAESTILDHRFKGRVFKSEDEYKKVLDGLKNKLMPMGLATAQSESVVTDS
FT                 ACQTKHSEDDDIWNDFDNSFQKVNKPTNSTDAVIRELDKYLAEEYVMRKDD
FT                 PLV"
XX
SQ   Sequence 2572 BP; 779 A; 479 C; 528 G; 786 T; 0 other;
     tagtgttggg ttgctcatga gtgagtgaac aaaaaagagt tgctcactaa actgagtgag        60
     tgaacatgtt ccttcgaact tgttctttat tgttcacttg ttcatttttg ctcacttgct       120
     cctttttgtt cacttgctca gttttgctca cttgttcagt tttgctcact tgctcttttt       180
     tgttcacttg ctcagttttg gtctttttgt tcacttgttc agtttctctc tggggttttt       240
     ggcattttgc atacggtcat acaggaaatc agctgttttc tcagagcgcg caaacctgtt       300
     cattcttccg tttattgttt caaatactca ataagatgtc cgctagaaaa tatagcgaaa       360
     tttggagcca ttttgaggat ttgggagacc tgcaggccaa gtgcaaatat tgcaaaacaa       420
     cactgagctg caagtcgcaa agcaatttaa gcagacacct taagaacagg catccggccg       480
     cactcgagcc cgtagttcgg caaaacgaag aggagcagga tgcaattgct gtaaaaagtg       540
     cgcagccaaa aataaccaca tttgctcaga ggcctgtttc gcaaaacaaa atgcattgcc       600
     ttgatacgca ggtggttcgc atgattgcca aaggtcaaca cgctttgcga ttggtggatg       660
     agccggattt caaaaaatta atttcggatg tttccaattg cccgggttat agcctaacga       720
     accaatgtgt taattccaaa actacgcgat gaagttatgg aaaaaatttt ggaaaagctt       780
     cgtgaggcaa cagcggtttg cctgaccaca gatggatgga catccctaac aaatgaatgc       840
     tatatggccg tcactgtgca tttcattgac aaagagtcaa caagcctttg ctcatacatt       900
     atagcttgtc gatcattccc actaaggcac acttcggaaa atctttgcgc atttttggaa       960
     gcaatcatcc tggaatggaa tttaaaaaat aaagtggtgg cgaaaacttc agacaatgca      1020
     gcaaacattg ttaaagccat tcataatggc aattggaatc atattggatg ctttgctcac      1080
     accctaaatt taattacttt aaccgtagct cagctggtct taagaagttg gaggagatgc      1140
     aggtattgct tcaattgcca cagcttaaaa ttaagcaaga cgtcccaaca cgctactttc      1200
     aaaatgttcg agcgtctgtt acttttaaaa gacgcagtta tggccacgct atcgactctg      1260
     agaatagact tgctactttc ttcagaggat tgggaagtta ttgaaggagt gcttccagta      1320
     ctgaagacat ttttccaaat aactacggaa atctcctttg aatcaaacgt gacactgtcg      1380
     aaagttattg tgctatctgg cattttgaaa gataagattg cgagcatgat gacattagcc      1440
     acaaacaaag aaattgtgag tttcattgag tgcattcaac atgaaacaaa ttctcgcttt      1500
     catgattatg aatcgaatga attgtacgct gaaagcacta tattggacca cagattcaaa      1560
     ggacgagtgt ttaaatcaga agacgagtac aaaaaggtac tagatggttt aaaaaataaa      1620
     ttaatgccaa tggggttggc cactgctcag tctgaatctg tcgtaacaga tagtgcctgc      1680
     cagaccaagc acagtgaaga cgatgacatt tggaatgatt ttgacaacag cttccaaaaa      1740
     gtcaataaac cgaccaacag cactgacgca gtcattagag aattggacaa atacctagcc      1800
     gaggaatatg ttatgcgaaa agatgatcct ttggtttaat ggcatctgcg taaattgcaa      1860
     tatcctctct tatactcgta tatgctgagt aggctttgcg aagtcgccac atctgtgcca      1920
     tgtgagcgta tattttcagg agcaggagaa gcagttcgca agaggcgtac acttctaaaa      1980
     ccctcaaatg tggaaaatct tttgtttttg cacagcaatt tgtaaataca atgtacgtat      2040
     acttatattt tcttaaattg tgtattaaca gcgttttcgt gttatagcgc tcattaaacc      2100
     atccaagaag gatttcattt actttttttt ttggaaagaa tgcgcaatgg atgttgtttt      2160
     tagtttcaac tgatgttgaa cactactgcg aagatgtcgg taagtttaaa aacaaaaaaa      2220
     gttagacatg attattaaat attattaagc tcgtgctata tttcatgtcg tctgcatcat      2280
     aaatggcgga ctcctgccga gattggcctt tccatgaagt catagggtac agtttcagaa      2340
     ctagctatgg catagagctg aagatgctga tgaagcaaaa gtgcaactct actccttatg      2400
     catcaaaaat aaacggaaga attgttcagc atgaataaat tttttttgag aacaagtccc      2460
     aacggtcgct tgcgttctga agggaacgaa ggaattcgtg attaactatt attttaattt      2520
     tgttattttg gtttaatcgt aatgaaacta atttttttat atttttcatg tt              2572
//
ID   hAT-21N1_LMi repbase;    DNA;    INV; 1952 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-21N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1952
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3047-3047 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1952 BP; 629 A; 328 C; 403 G; 592 T; 0 other;
     cagtgccgga ttacccataa ggcagagtag gcagctgcct aggggccccg cgcattttag        60
     gggccccgtg tgcaccgata taacaatgag aattttttag aaagactttt gcgttttaaa       120
     taaaaattag ttgccttttc gttgtttgtc tgcaggcgag tgaaagaaaa tatatatgat       180
     aggaaatgga tcctgatagt tctgaagagt ttgaggagta caagacggtc acttggggcc       240
     cttcttagtc ttcagcggaa gttgtccaca ccaaagaaaa gctgcagcag actaatccct       300
     tcaggtaagt gtagaaaaag gaggaacaat tgccacaact gttctgacat tcttgagtaa       360
     atgtggcatg atataaaaac ctgagaggac agtcttatga caatgcatca aatatgtcag       420
     gatgcacttc ttcgggctag tacaagcatt gtacaacttt ttctcggcgt cgtctatcgt       480
     gggaaaaatg cttgaatatc ttaaaggaat aaatggtgaa cgtcaacaaa gtttgcagta       540
     gttttaaaaa gagtgactag cacaaggtgg tgtgcaagag ctgatgcaac gaaggcctta       600
     tcccgaggct tcagcagctt ccgtaagtct ctccaagaca ttgctgaaga taggaatcag       660
     aagcttgaga caattcacga agctaactgt ttactaaatg cgttgtcaaa aaaggaaacc       720
     gtcatcctgg tagactctgg gctgcaatac tagaccggat aaatgcagtt aataagtctc       780
     tacaaagaga aacagtagag cttcagacgg ctgtggaact cttaaaatcg cttctcagtt       840
     ttctatcact acgagaaaaa ggcagatgag aaaatctgtg cacaatacac cgatgaaggc       900
     aagcgtcttc gcaaaagacc aaaatgtcaa gacgatggta atgcagaaga gattgtgctt       960
     cacggaaaag agaaattcaa aactgaaact acctaccaat attggataaa ttatgtacag      1020
     agctttctcg tcgtataaaa gcttataata aagttcattg tctttttgga ttccttgttg      1080
     agttcccact gaagtctgat gatgaaatta aagaagctgc ccagagattt agagacattt      1140
     attctgagga catcgaagag gaatttgtgg acgaaatgat tcattttaaa ttcttcacat      1200
     cacaactaga agattttaaa gctgaccaag cagttccagc atcgcgatca tacaaactca      1260
     tttttgaaaa tatggtgcaa tcaacgttcc caaatgttat gactgcgtta aaaatttaca      1320
     ggtgtctcat gattacgaat gtaacgggcg agcgaagctt ttcaaaacta aaacttataa      1380
     aaaattgtca taggtcttca atgtcccaag aacgtttgaa ctcacttgcc attatggcca      1440
     cagaatatga tatcttgcag gatatagact ttaaagatat tttgaaagat tttgctggaa      1500
     aaaattgagg aaagtaaatg tttaatgcgt ttcttaatta ttattaattt ctatattttt      1560
     gttaaataat ttctggaata ttattgtatt aatcaacgta tattgatcta ttgataattg      1620
     tttgttttgt tgaataaata catttacatg ttgcacgaaa atgtctcatt tcactttgct      1680
     attattattc ttatatccaa atttgagttt attgtagctc gtaagcggct atcttacacg      1740
     atggctgaac atgttaatta cttaaaacga atgcttcggt tgtggaatac cgcaatttta      1800
     ttattattat ggattacctc attttattat tattattacc aatatattgt tgttgtttgg      1860
     tggaaaatta ttaacttatt aagggatgag tttggagtgg ggccccaaga tttggattgc      1920
     ctagggccta cacagggctt aatccggcac tg                                    1952
//
ID   hAT-21N2_LMi repbase;    DNA;    INV; 1618 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-21N2_LMi; hAT-21_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1618
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2923-2923 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1618 BP; 464 A; 284 C; 342 G; 528 T; 0 other;
     cagtgccgga ttacccataa ggcagagtag gcagctgcct aggggccccg tgcattttag        60
     gggccccgtg tgcaccgata taacaatgag aattttttag aaagactttt gcgttttaaa       120
     taataattag ttgccttttc gttgtttgtc tgcaggcaag tgaaagaaaa tatatatgat       180
     aggaaatggg tcctgatagt tctgaagagt ttgaggagta caagaaggtc acttggggcc       240
     cttcttagtc ttcagcggaa gttgtccaca ccaaagttta ttgtagctcg taagcggcta       300
     tcttagggtg gccagatttc aaaaaccaaa atacgggaca catatggata cctaagattg       360
     cgccacgtta aggaccgcgc ggccgctcgc gtctgagttt cgagccctcc ctcgggcatg       420
     ggtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgttgtcc ttagtgtaag       480
     atattttaag tagtttataa gtctagggac cgatgaccac aaaagtttcg tcccttagat       540
     tacaatcttt ttgtcattta ggagttcggt attttctcat agatttttat aataatgaac       600
     tcatgaagta ttttgaaaat gagttcttgt tataattatt tcattttcac actaaatatt       660
     ttgttttcgc cgcccataaa gtatttgtgg tggagcagca ttagtgccag gtagagctag       720
     cacaaaccaa gtaatgagct acaaattttt tcaccagtat cttcaagtgg aagtaagttg       780
     aaaatgggag acctgttttt accaactcgc ttcgcaattc tcaatttttg ttcacataca       840
     tttttgacgt ggttcaattc ctaaaaaaga aactggtttt cacatctttc tttcaaatta       900
     ttttcgccaa actccggtaa agttttaaga ctttactaga cagatttcca acgaagaaga       960
     tatttgagct gaacatggtt tcagcatatg aaatgggtaa gtccatttcg cgatataacc      1020
     gattaacgtc tagtgaaatg aacatgaaat gtccttgaaa tcaaactctt tcagcacgtc      1080
     aacttctagc aatgaaatta ttaattggaa aagctgcaaa tttcatgtga aaccattatg      1140
     taataccaac caaagaaatt cgaaaatcga gtcttattca ctttgagtta aagcctattt      1200
     tctgtattgt ttgaatatga ccccatttct tctccatttg gttacactgt agattctttg      1260
     aaaacacgtt atttcaaaat atacgggacg gttagtaaaa aacgggacaa tatacgtccc      1320
     gtatttactt tgtcgggaca gttgggctaa ataagggacg atcccgtaaa atacgggacg      1380
     tctggtcacc ctaggctatc ttacacgatg gctgaacatg ttaattactt aaaacgaatg      1440
     cttcggttgt ggaataccgc aattttatta ttattatgga ttacctcaat tttattatta      1500
     ttaccaatat attgttgttg tttggtggaa aattagtaac ttattaaggg atgaatttga      1560
     attggggccc caagatttgg attgcctagg ggcctacaca gggcttaatc cggcactg        1618
//
ID   hAT-21_DTa  repbase;    DNA;    INV; 3319 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-21_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3319
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6239-6239 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 8-bp TSDs. 13-bp TIRs.
XX
SQ   Sequence 3319 BP; 1134 A; 540 C; 579 G; 1066 T; 0 other;
     tagggatgtc gaaaatatat caaaatatcg atatatcgat gatatttttt aaaaaaaaat        60
     attatcatag cgatattttt ttgggccgaa atatcgaata tcgatattat ttgtaaatga       120
     tatttttgtc ctttctaatg gttggtcact ttaaagcctt agccgacgcc aaaaaaaacg       180
     caagaaatga gcgcaaaaaa gtttttcaca gagttttcaa caaacacagc aaagtgcaca       240
     ttgtgctgta aaataattaa aactagcgga aacacatcta acctaacgtc gcacttaaaa       300
     aataaacacc atgatgcttt tctcaaatgt tcaaaggtac gtaaatgcaa taagccggaa       360
     tgtgtgtaaa aggcgacaca cacacagttt aactgttgtc aaatcacata tgtatgtacg       420
     tatgtggtac atgcacgtgt gtcgaaagtg caacattttt ttttattaag tatatacaaa       480
     ttttataaat tataaatgta tattttagag caccaccaaa ggagaacgtg aaagtcaagc       540
     cagtattcaa catttgttct taggagaaaa tcgaaaaggt aaatatcttt aaaaatttac       600
     tgtattaaag tatccatttc taatttatta tttattttaa aaattttcca gcaaaagaca       660
     aaaacatcac agactcctta atcaaaatga tttgtaaaga caatatgccc gtaagatgtg       720
     tggaaaagga gggactgaaa ggttttgtta aaacatgcgt tcccaactac aaattaccaa       780
     gtcgatcgaa ggttagtgtt tggaaaaaca taatataaac tatattcttt ttctgcgtaa       840
     ccgtgcaaac ttatttatat atatggtaca tatattttaa ataatcattt tgctggttgt       900
     tgacagtggg tatggtataa actatgtaca tatatctgtg ttaatattag ctatttaatt       960
     aatgcataaa gacatgccca tctgtcagtc tatttctaca caaactgttt tggaaaattt      1020
     ttgaaattta aagtgaaaat gaatggggtt cttacacctg ccttagttaa actttactta      1080
     aatagtttgt gctgcaatag gattaacacc tcccaaaatt aactttcata atgagcttta      1140
     tttagaaagc agtttttaaa ttatgagatt tgtttgtagg ttacaaattt gatctccgaa      1200
     aagtacacac attgtatgga gaagctgaaa gggtatttta aagatgtgaa tcacttttcc      1260
     tttacctgtg atggcgtaac catcacgaac tctacaagat ccttcttaac aataacggta      1320
     cattttttaa aagaaaatca gcttcaatct gtatgtctac aggctgctag gatgagccag      1380
     gtttgtttaa aataaaaact ttagcattgt gtttgttttt gtgcgttttt aatatgatat      1440
     tgtgttcaat gtttagaata accattaact tagcttggcg taaccatcac gaactttaca      1500
     agatccttct taacaataac aataaatgtt gtttttgtgc gtttttaata tgatattgtg      1560
     tacaaagtct gtgtgtttta gactatttca gttttgcttg attttctaat attttgtaat      1620
     aatttttctc tatttagtct cacaccagcg aatatatttc gacacttctg gaaggtgctt      1680
     gcgatgaatt cggaattgaa acatataaaa gaaggacatt aactacggac aacgcaaaaa      1740
     acatgatagc tgcatcgaga ttgtttctgg gtgctgataa tcacgttccg tgttttgcgc      1800
     acacgattaa tttggcagtt aacgattctg taaagaatat tcaatcattt tccacggtct      1860
     tagataaagt caaacggatt gttatgcatt ttaagcacag ctcagcttct atggacgcac      1920
     tgaggaaatg ccaaatggac gaaggagtgc cagaaggtcg catcaaaacc ctaatccaaa      1980
     gtgtggacac tcgctggaac tcaagcctcg atatgcttaa ctcgtttgtt atcctcgccg      2040
     aaaacgtagc gttcgtcctt ctgagcaggc gaagctcaat aaaatcaccg caaatgctta      2100
     cactaacaga gttaaacgtt tgccgtgatt tttgcaacgt tctcttacct tttaaagatg      2160
     ccacggaaaa agtgagcggt gatgcatacg tgactgtaag cttagtaatt cccatgatct      2220
     gcatgatgtt gaaaaaagtg aaagatgcga aaatacattc ggaggagggt atgcgaacca      2280
     aggaaacagt tctagaaatt tccgaagaac gtctaaaaga tttgctaacg aacaagattt      2340
     tgattaaagc taccatgcta gacccaaggt tcaagaaaat gtactttgat tcgccaatac      2400
     ttgtaaggga agtaagtcaa acaatcttaa aggaaatgaa ggggagtacc cacgaagaag      2460
     atatgccttt ttttgatgat gaaatggaac tcgcaatgca tgactcaata gcatccagcg      2520
     aaaatgacag ttttttgaat ctgcataaca aaaccataca acttcatagt tccgaaccgg      2580
     acaaagccga agaaaaagag atgaaacttt tttttagcat accgaatgct agttggcaaa      2640
     cagatccatt ggaattctgg aatgatcaaa aacaaactat gccaaatctg gcagcggtag      2700
     cgttagcttg ccttattact cctggaagtt ctgttgcatc cgaaagactg gcctctgcca      2760
     ttaaatgtgt ggtttgcgac gcccgcagtc gtatgacgga ccagcatata accgagcgag      2820
     tctttttaaa gtccttaagt atagatttct tttcttagca tttcataaaa ttaatacgcc      2880
     tactttaaaa aatggtgatg tataattaga tttaaatcaa cggctgtgtc caaaaatgaa      2940
     gatattgaat gtatatttta cttgaatttc tatatactat ttgtttgaaa atacttatat      3000
     gaaagaatta cgaatctggc caggaaaacg gccttctact taataaaaaa tgtgaatatg      3060
     atttgataac attgttttat ttcttgaatt tcttcatatc atatgtgtta aagcaacatt      3120
     ttaagggtac cgtgctctct gaattttaaa tgagcagcct gtgatgcccc cttccattaa      3180
     aattttcata ttttgaaaaa atagaatata tcatcgatat atcgatattt taaattgata      3240
     tttggaaata tcattaatga tattttttta aaaaccaaat atcatcgata cgatattttt      3300
     taaaaattcg acaacccta                                                   3319
//
ID   hAT-21_LMi  repbase;    DNA;    INV; 4440 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4440
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3048-3048 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1816..1866,1876..2454,2406..2588,2592..3989)
FT                 /product="hAT-21_LMi_1p"
FT                 /translation="MKCRIIGVRETPRVSALFLASSRQYEDYKRKFSRHMV
FT                 YRKNVSGEQIKREWLMYSPSTGNVYCFPCVLFGETHKCKSQFSEGFSDWKS
FT                 ASQRMKMHEDSVAHRTCVQTLISRRRSRGVINSSLEMQINKEQEYWTQVLQ
FT                 RVVSVIKFLSSRGLAFRGDTELLGDQHNGNYLGILELIAEYDPFSSSHLSK
FT                 YGNEGRGKNSVCLPQFAMKLRSRKKFCLSSTICDEIIEIMGNKVLQVIVKE
FT                 IQQSKYFSMSVDSTPDISRIDQLTVVLRYVVSDGEVIERFLTFIPITSHAG
FT                 GTIATTVLTFLSKCGTDIKNLRGQSYDNASNMSGCYNGLQAHIAKINHLAH
FT                 YIPCAAHSLNLVGVCAVESCPGAISFFGLVQALYNFFSASSYRWGKMLEYL
FT                 KGINGERQQSIAVVLKRVTSTRWCARADATKALSRGFSSFRKSLQDIAEDR
FT                 NQKLETIHEANCLLNALSKKETVILVDFWAAILDRINAVNKSLQRETVELQ
FT                 TAVELLKSLLSFLSSQRDIFDDYEKKADEKICAQYTDEGKRLRKRPKCQDD
FT                 GNAEEIVLHGKEKFKTETYLPILDKLCTELSRRIKTYNKVHCLFGFLVEFP
FT                 LKSDDEIKEAAQRFRDIYSEDIEEEFVNEMIHFKFFTSQLEDFKADQAVPA
FT                 SRSYKLIFENMVQSTFPNVMTALKIYRCLMITNVTGERSFSKLKLTKKCHR
FT                 SSMSQERLNSLAIMATEYDILQDIDFKDILKILLEKN"
XX
SQ   Sequence 4440 BP; 1436 A; 780 C; 916 G; 1306 T; 2 other;
     cagtgccgga ttacccataa ggcagagtag gcagctgcct aggggcccgc aattttaggg        60
     gcccgtgtgc accgatataa caatgaaatt tttgaaagac ttttgcgttt taaataaaaa       120
     ttagttgcct tttcgtgttt gtctgcaggc gagtgaaaga aaatatatat gataggaaat       180
     ggatcctgat agttctgaag agtttgagga gtacaagacg gtcacttggg gcccttctta       240
     gtcttcagcg gaagttgtcc acaccaaaga aaagctgcag cagactaccc tttcaggtaa       300
     gtgttgcgac agggaggtcc gccgctaaca gcgcgacagg tgtcgcctca ccgtggggct       360
     ctcgggacca gggaaacccg gagtacattc cagtatgtat tgaagaggga aaccggaaac       420
     ggattggaaa caacgcaggt aaatcgttgg gaacggcaca ttcttaacgc tcgaatagcg       480
     ggaatccggg agtgcgaaac agtataaata gtcttcaggc tgtctatgtg atcattcaag       540
     ttaagtgttc gtttcgaata aggttgcgca aacgtgtgag ttaggaaatt caatcgacca       600
     acctagcaac atatacatgt taggataact tgtcatagtg cgtgtaacag atcctcgctg       660
     acgaatcaac gccatacacc gagagcgact ccacaggtaa gaaactttaa aatattctct       720
     cttatcaatt tatttacctt gattgaaggc aaactttttt tacttaaaag acaatatagg       780
     tacatttttt ggctggttat gctacactat ttctttctag tggattagtt tcgatgttta       840
     agtacagcat acatcatcac ctaaaaacag aaagtattgt taaatatttc ggattgagaa       900
     taatttttct ctatatagat ttacgtagaa aatttacaaa ccgtagtaac attatgaaaa       960
     gtgctagagc aacaattttt tgtctgagca taccatgttg actactgatt ttagactgac      1020
     aacgcactcg ttaacagtgt taagtgaaac tcaagtgacg ctgctagcga gtatcagtta      1080
     ctacagatat agcgccccct atttggatta aaaactatgt ttgacatagt aggtgtctta      1140
     caacgtctgt attagcattt taataaatta caattagcaa caaatgcatg ttgttaatgt      1200
     taaattacag actactatat ttttatgagt ggtatcacat aagattctag caccctttat      1260
     aaacataatt ttgtgtacag agtaaatcga gatccaacta agtctcgggt ttcagtttaa      1320
     aataccaaac aaaattcaaa atattgttga ggcaatttat tgagccttga aaaagtattt      1380
     caggacagag atagcaagta gtaaataata ttcaagtttc ttattttcga ccaagatgtc      1440
     acaattttaa acgagtagtt aatgtatttt tctgctcttt tactagatgt aaatgtcggc      1500
     gccagaaaga aagcgatacc aaagtggtgc aagaaaagaa aaagcaagaa tagcgcagaa      1560
     agttcgcgag caaataagaa aaacacccag cctttaccaa cttggtttta ctcgtaagtc      1620
     aacagaagat aaactagaat tcccttcaac tacgctacgt ccgccagtga tgtagtggct      1680
     gcagatcttc acctgaccgc attgctgtcg agttaccgag tgaaattgaa gttgaagttc      1740
     agttatttcc caataatatt acaaatctgg gaccagaata tcgaagtgac attgggttgt      1800
     ggcgatctat taccaatgaa gtgcaggatt attggtgtaa gagagacccc gcgagtgtca      1860
     gcactttgac tgtgattttt ggcttcaagc agacagtacg aagattataa aagaaagttt      1920
     tctcgccaca tggtatatcg gaaaaacgtt agtggcgaac aaatcaagag agaatggctc      1980
     atgtactctc cttccacagg aaatgtgtac tgtttcccat gcgtcttatt tggtgaaaca      2040
     cacaaatgca aatctcagtt ttcagaggga ttttctgact ggaaaagtgc atcacaacga      2100
     atgaaaatgc atgaagatag tgtagcgcat cggacgtgtg tacagacact gatcagtagg      2160
     agacgcagtc gtggtgtaat aaacagttct ttggaaatgc agataaataa agaacaggaa      2220
     tattggacac aagttcttca gagagtggtg tcagtgatca aattcctatc atcgcgtgga      2280
     cttgctttcc gtggtgatac agaacttctg ggtgaccaac ataatggcaa ctatttggga      2340
     attttagagt tgatagcgga gtacgatcct ttttcaagct ctcatttatc caaatacggc      2400
     aatgaaggtc gaggaaaaaa ttctgtttgt cttccacaat ttgcgatgaa attatagaaa      2460
     taatgggaaa caaggttctg caagttattg tgaaagaaat tcagcaatcc aaatacttct      2520
     ctatgagtgt tgattcgaca ccagatatct ctcgcattga ccaactgact gttgtactta      2580
     gatatgtttg agtgtcagat ggagaagtga tagaacgttt tctcaccttc atcccaatta      2640
     caagtcacgc gggaggaaca attgccacaa ctgttctgac attcttgagt aaatgtggca      2700
     ctgatataaa aaacctgaga ggacagtctt atgacaatgc atcaaatatg tcaggatgct      2760
     acaacggtct ccaagcgcat attgctaaga taaatcattt agcacactat atcccttgtg      2820
     cagcacactc actcaacctg gttggagtat gtgctgtgga gagctgtcct ggtgcgatct      2880
     cgttcttcgg gctagtacaa gcattgtaca actttttctc ggcgtcgtcc tatcgatggg      2940
     gaaaaatgct tgaatatctt aaaggaataa atggtgaacg tcaacaaagt attgcagtag      3000
     ttttaaaaag agtgactagc acaaggtggt gtgcaagagc tgatgcaacg aaggccttat      3060
     cccgaggctt cagcagcttc cgtaagtctc tccaagacat tgctgaagat aggaatcaga      3120
     agcttgagac aattcacgaa gctaactgtt tactaaatgc gttgtcaaaa aaggaaaccg      3180
     tcatcctggt agacttctgg gctgcaatac tagaccggat aaatgcagtt aataagtctc      3240
     tacaaagaga aacagtagag cttcagacgg ctgtggaact cttaaaatcg cttctcagtt      3300
     ttctatcatc acaaagggac atatttgatg actacgagaa aaaggcagat gagaaaatct      3360
     gtgcacaata caccgatgaa ggcaagcgtc ttcgcaaaag accaaaatgt caagacgatg      3420
     gtaatgcaga agagattgtg cttcacggaa aagagaaatt caaaactgaa acttacctac      3480
     caatattgga taaattatgt acagagcttt ctcgtcgtat aaaaacttat aataaagttc      3540
     attgtctttt tggattcctt gttgagttcc cactgaagtc tgatgatgaa attaaagaag      3600
     ctgcccagag atttagagac atttattctg aggacatcga agaggaattt gtgaacgaaa      3660
     tgattcattt taaattcttc acatcacaac tagaagattt taaagctgac caagcagttc      3720
     cagcatcacg atcatacaaa ctcatttttg aaaatatggt gcaatcaacg ttcccaaatg      3780
     ttatgactgc gttaaaaatt tacaggtgtc tcatgattac gaatgtaacg ggcgagcgaa      3840
     gcttttcaaa actaaaactt acaaaaaaat gtcataggtc ttcaatgtcc caagaacgtt      3900
     tgaactcact tgccattatg gcmacagaat atgatatctt gcaggatata gactttaaag      3960
     atattttaaa gattttgctg gaaaaaaatt gaggaaaata aatgtttaaa tgcatttctt      4020
     aattattaaa tttccatatt tttgttaaat aatttctgga atattattgt attaatcaac      4080
     gtatattgat ctattgataa ttgtttgttt tgttgaataa atacatttac atgttgcacg      4140
     aaaatgtctc atttcacttt gctattgtta ttcttatatc caaatttgag tttattgtag      4200
     ctcataagcg gcaatcttac acgatgcctg aacattttaa ttacttaaaa cgaatgcttc      4260
     gttgtggaat accgtaattt tattattatt attattatga attattcaat tttattatta      4320
     ttattaccaa tatattgttg ttgtttggtg gaaaattatt aacttattaa gggatgagtt      4380
     tggagtgggg ccccaagatt ggactgcmta ggggcctaca cagggcttaa tccggcactg      4440
//
ID   hAT-22_DTa  repbase;    DNA;    INV; 2212 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   08-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-22_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2212
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           309..1775
FT                 /product="hAT-22_DTa_1p"
FT                 /translation="MKRIHRTLGADDLPSPSKKIDSCVTTSYDSNSHRKAK
FT                 LDRAVMKYVATDMRPFSVVEDTGFREMLNVFDPRYKLPSRKTLQNVLMAEQ
FT                 FEDKQRKLMGILKEIEFCAITTDLWTSQANEAYIKVTCAFVSNDFKLQTAV
FT                 LSTNKLLSETNHTAENIKDSLQAVFDKWDISSKIVAIVTDNASSMIKACEL
FT                 LQKRNLPCFAHTLNLVVQGCLKLDCLVPILSKCKTTVTYFKSSSMAYKKLK
FT                 DYQDGNTKYSLKQEVPTRWNSAYLMIERILKTHEAIGKVLLSTSKAPQPFT
FT                 VDELDILTDLVQLLAPLDTATKQVSSNSTVTVSLCIPITCGLLHTLDTLKP
FT                 SLKSSEGLAACTFLMESIVTRLTKYEERSLPRIGTLLDPRFKKQGFRSPFN
FT                 VVQAEKLLENEVTVINNSCDSAPHAAESPPPSKNRQTLFTFLQKNISELPT
FT                 SKRTDAIIDLRQNFNLKHCEENVDPLQFWKVSVPVFTKFKEKHK"
XX
SQ   Sequence 2212 BP; 725 A; 421 C; 426 G; 640 T; 0 other;
     tagggacggg ataactatcg atggcactat cgaatttttc tgagtcatca aatttttgcg        60
     atagtttttg gacgcttgat ggtgaataga agggtggtta gttcggtggc tctaagttaa       120
     gcgtagatat caacaaatca gccgaaagca gctctgacga agagaacaac agaccgaaaa       180
     aacccagagt tgggaaatca acagtgtgga agttttttac aaggtcaaat gatggtaagt       240
     cggcaaagtg cgtattttgt cagaaggtgt acaagacaag cgggaacact tcgaatcttt       300
     tcgaccacat gaagcgcata catcgaacac taggcgctga tgatttgccg tcgccttcaa       360
     aaaaaattga ttcttgtgtg actacatcct atgattcaaa ttcccacaga aaagctaaac       420
     ttgatagggc tgtcatgaaa tacgtagcca cagacatgcg cccgttctca gttgtggaag       480
     acactggctt tcgcgagatg ctgaatgttt ttgatccccg gtacaagtta ccctctcgaa       540
     agaccttgca aaatgtattg atggcagagc aattcgagga taaacaaagg aaactaatgg       600
     gcatattaaa agaaatagaa ttttgcgcta ttaccacgga tctatggaca tcacaagcta       660
     atgaagcgta tattaaagtg acatgcgcat tcgtctcaaa cgattttaag ctgcaaactg       720
     ccgttttgtc aacgaacaaa ttgctttcgg aaacaaacca cacagcagaa aatattaagg       780
     acagtttgca agccgttttt gacaagtggg acatatcatc gaaaattgtg gcaatagtta       840
     cagacaatgc gagctccatg atcaaggctt gtgaattgct ccaaaaaaga aatttaccat       900
     gttttgctca tactttaaat ttagtagtgc aaggctgtct taagctagac tgtttagtcc       960
     ctatcctaag taaatgcaaa actacagtaa cttattttaa atccagttcc atggcgtata      1020
     aaaagctgaa agactaccag gatgggaaca cgaaatatag tctgaagcag gaagttccta      1080
     ctcgatggaa cagtgcttac cttatgatag agcggatttt aaaaactcat gaggcaatcg      1140
     gcaaagtttt gttgagtaca tcaaaagctc cacaaccgtt cactgtagac gagttggaca      1200
     tccttacgga cctggtacag ttgcttgctc cactagatac tgcaacaaag caagtatctt      1260
     ccaattctac agtgacggtt tcgttatgta ttcccataac atgtggtctt ttacatactt      1320
     tggacacttt aaagccgagc cttaagtcta gtgagggatt agcagcctgt acatttttga      1380
     tggaaagcat tgtcaccagg ctgacaaagt atgaagagcg ttctttgccg cgaatcggaa      1440
     cattgctaga cccaagattc aaaaaacaag gcttccgttc tccttttaac gttgtacagg      1500
     ccgaaaagtt attggaaaat gaggtcaccg tcattaacaa ctcttgtgat tccgcacccc      1560
     atgcagcaga gtcaccacca ccttctaaaa accgccaaac cctattcaca tttcttcaaa      1620
     aaaatattag tgaattgcca acctcgaaaa gaactgatgc gattatcgat ctcagacaga      1680
     actttaatct gaagcactgt gaagaaaatg tagatccctt acaattctgg aaggtaagtg      1740
     ttccagtttt cactaaattt aaggaaaaac ataaataaca tttcttttat ttcagcataa      1800
     tgaatctact ttaaaaaaat tagtgtcgaa atttttatgt gttcccgcaa cctcgactga      1860
     gtcgaaacgt atgttcgtca taaataaccg cagaacttcg cttaaggcga ataatgtggg      1920
     cattttgtta tttctgcata aaaattcctg gatagaataa tttttttttt tttaatatca      1980
     aaaatgactt gaattttgta tgatctcttt tgaagttacc ttataattta tgttaataat      2040
     aaggtacaat aattttgatt ttttctcttt gttattatgt ataaaaaaca taaaaccttt      2100
     atatggaaaa aattaactat aagtatgacc atactatcga tactatcgaa tttttgcttt      2160
     gaaaacatcg aaactatcga atggcgcgac catcgatagt atcccagctc ta              2212
//
ID   hAT-22_LMi  repbase;    DNA;    INV; 3340 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3340
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3049-3049 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. 5'-end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1322..1693,1600..2487,2403..2873)
FT                 /product="hAT-22_LMi_1p"
FT                 /translation="MATKERILEDIRAAKYYAVILDCTPDISHQEQMSLII
FT                 RYIKMSGVPVPTIVEKFIQFLVVRDTTGEGLTKVLIEVLEENNLNIMDCRG
FT                 QGYDNGANMKGKSSGVQARVLQINKRAMFTPCVTQARSQYERKILRSTGSS
FT                 FADQQEGNVYTLCYSSLNLVLGDMAKCSTEAMTFFGTIQRLYTLFSASTER
FT                 WNILTEICSELTLKRHTDVRWESRLESVKPVRYQLRKICEALEKVAETTKD
FT                 SSVRSEALSLVNHSLSSFEFILALIIWYDLLHAVNEVSKTLQAQDMQLDVA
FT                 LQEISGLNGFLESYRETGFTSAMSTAKELMADLGWDAKFSTRRQKKRKRFF
FT                 DETEDDPDIVADESQKQYKAEERFKIEYFLVILDEALSGMSSKFKELTNYS
FT                 EYLDFSFTRSNFVTCKMRRLKCVVRNLFRILGFLFHPFKLRDMQNEEIEMC
FT                 CQKLATYLQDGELVDVDTSDLISEVKLLRFTIPPIVKTALDALKYLGPLKE
FT                 SYANITTAYRILLTIPVTVASGERSFSKLKLIKNYLRSTMAQDRLNGLAIL
FT                 SIESDEALQLKKEDVIREFALRKARKVPYL"
XX
SQ   Sequence 3340 BP; 1014 A; 653 C; 658 G; 1015 T; 0 other;
     caggcgaatg tagtgtcatt ggatatcgcc ctccaataaa acaaattagt atcgtacctt        60
     tttttgccaa ttgtagtttc cgtgatattt gaatgtcttc agttaaaatg aacatcctgt       120
     atataaaaaa aaggtatcta aaaccttcct gtattagaat gcaacgttgt gtcaaacttt       180
     gggctctatc ggtgcaggac ttgagttttt gaagtgtaca caaaccaacg gaccattttt       240
     atatagagat gaagaatgtg aaagttttaa cacgctttat ttgagtttcc atattaaaaa       300
     aaatgcagtt ataatcaaag ttgaaaatgg tcatcaattc actttttatc aaattcgagg       360
     tagccctaca tttatttcgt acatcagtcc attttaatgc tatctgtgag gaaaaaaaac       420
     tttctatgaa gcaattggaa ctagagatac caaagatgta cggtatgact tgaaaaatgt       480
     taggattttc attcttggta aacccttcaa tgattttctt ccatttgtca atcacaccct       540
     tatttttgtc atcaaaagac tgtgccatgt ccaggcttct tttaattact tgaaattctt       600
     cgtataacga gttcatgttc atgagttcag ttgatcgatc tttaaaggct cgcaaatttt       660
     tgaaaatggt cgtaatttat tggtgatttt agtttaaaaa cagcatcttg gaaaggatgt       720
     tgttttctga gaaaaacgtg gtaacaaata tcctacaaaa ttggcataga aaatcgttcg       780
     gaatagattc ttttgcttaa gtgattaatt aacgcattat ttctcttgcc ttacttccga       840
     aaaagttgcc ttttattctt tgctcaatct atccgcgaat accgtgcatt tcagcaagta       900
     ttccaacaac tgacggaaaa tctgattcaa tcttcttatt gttgtttcta ccgaaaacat       960
     tacgttatga agaaacgaca aatacgccat ttttttcttc ttcacttgtg attatctttc      1020
     ctaatagacg aggacattca ttgcggaatt ccagaaaatg aaattttagt gcaggccata      1080
     tttttaatgc tctttcgaca gcaggaaata cgggacgtct ggcaacacta tactcaaacc      1140
     aagcacagtg ttcacgaaca aatgcgactg aatcgctcaa ggccgtgcac ggtcttggat      1200
     cggacaccct gtacagttca aacgcccaca ttattttccc caagtattac ctccctcaac      1260
     gttctttaaa actgacgtaa aacccttaac attcttaaaa aatccttttt tttttacagg      1320
     tatggcaact aaggaaagga ttctagaaga tattcgagct gcaaaatatt acgctgtcat      1380
     cctcgattgc accccagaca ttagtcatca agaacaaatg agtttgatta tccgttacat      1440
     caagatgtcg ggtgttccag ttccaaccat agtcgaaaaa ttcattcagt ttttagtagt      1500
     gagagataca actggagaag gactgacaaa ggttttaata gaagtgctgg aagaaaacaa      1560
     tttaaacatc atggattgtc gaggccaagg atatgataac ggagccaata tgaaaggaaa      1620
     atcctcagga gtacaggctc gagttttgca gatcaacaag agggcaatgt ttacaccttg      1680
     tgttactcaa gcttgaactt ggtccttgga gacatggcca aatgtagtac ggaagcaatg      1740
     acatttttcg gcacaataca gcgattgtac actctatttt cggcatctac agaaaggtgg      1800
     aatattctca ctgagatctg ttctgaacta accttaaaga ggcatactga tgttagatgg      1860
     gaatctcgtc ttgagagcgt caaacctgtc agataccagc tgaggaaaat ttgtgaagca      1920
     ctcgaaaagg ttgccgaaac aacaaaggat tcatctgtcc gatctgaagc actgtcttta      1980
     gtaaatcatt ccctcagctc tttcgaattc attttggctc ttatcatatg gtacgacctc      2040
     ttgcatgccg tcaatgaggt cagtaaaact cttcaagctc aagatatgca gttagacgtc      2100
     gccctacaag aaataagtgg attgaatggc ttcctcgaaa gctacaggga gacagggttc      2160
     acatccgcta tgtcaactgc aaaagaattg atggcagatt taggatggga tgcaaaattt      2220
     tcaactcgtc gccaaaagaa gcgcaaaaga tttttcgacg agactgaaga cgatccagac      2280
     attgtcgccg atgagagcca aaagcagtac aaagccgaag aaagatttaa aatcgaatac      2340
     ttcttggtga tcctcgatga agctttgagt ggcatgagct caaagttcaa agagctgact      2400
     aattattccg aatacttgga tttctctttc acccgttcaa acttcgtgac atgcaaaatg      2460
     aggagattga aatgtgttgt cagaaattag cgacttatct gcaagatggg gaactggtgg      2520
     atgtagacac atctgacctc atctcagaag taaaactgct acggtttacg attcctccta      2580
     tagtgaagac agcgttggac gcacttaagt acttaggccc actcaaggaa tcatatgcca      2640
     atatcaccac agcgtatcgc attttgctga cgatacctgt caccgtggcg tctggagaaa      2700
     gaagtttttc aaaattaaaa cttattaaga attatctaag atctaccatg gcgcaggacc      2760
     gccttaacgg gctcgctatt ctttcaatag aaagcgacga ggcacttcag ctgaagaaag      2820
     aagacgtgat tcgagagttt gctttgcgca aggcacgcaa agttccgtat ttgtaagcat      2880
     acgcagggac aattgcgtag tttcggctgt gaaggtttaa tatgctgatt tgccaaatat      2940
     tttacatact gtacctgatc ctgtgttcgc cgcgatctta gtgtgattta agatgcggtt      3000
     attgatattg acaagagttc cacatgcgta caattaaaca gtattacgac gttaaggtag      3060
     ccaaaaataa tggtacagtt tccgtctgtt ttgtttaact tgctgttacc caaatacttt      3120
     acatacgtgt tgctatgttt tgagatttta agtgtttaaa atatggtaat caatatttta      3180
     tttgaagttg tgtttaattt tgttaataaa aagacgagtt ttttaaagca agttttcggt      3240
     ttttgcgttt cacccccttc ccctccgccc ctacccccct tgccatgcgg cctcgcgctt      3300
     ggcttcgcta caggcctcgc atgcccttgc gacgggcctg                            3340
//
ID   hAT-23N1_LMi repbase;    DNA;    INV; 1099 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-23N1_LMi; hAT-23_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1099
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2924-2924 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1099 BP; 333 A; 186 C; 217 G; 363 T; 0 other;
     caggggtcgg caacacgtcg atcgcgatct accggtagat cgccagtgct tattaggtag        60
     atcgcgtgag ttctgagagt tcagaagaaa aatttgttga ataaaattga caactgtttc       120
     tcgtagcaga taaaatgcgc acttgttcga cacaagtttg ttttatttat taacaatcac       180
     gtagaattgg tagcaacatc taccttgaat ctctaaatct gtttttcccg cattagttca       240
     ataagccgct acctgcgcgc cacccgttgc tacactattt cattcatctg tgggcaatgt       300
     gtagtattgg ttcggtatgt ggctgcagaa gacggtgaat ttcgtgcctc gtactgttca       360
     aggaggttag aatattaact tcttcggtgc cgttgcggtg aactacgaac ttctgcgttt       420
     ttatagggtg tggatgggat attttgcgac taagatcgtc actttcaggg atgattttaa       480
     tgaccggttt ccagattttc aaaatatttc tgtggtaggg cttaaccttc aactatatct       540
     tcttccactg aaaatgtttt tggcgtagat acagaagctc ttgaacttca aataatatca       600
     ttaaaattat ttgtatctcg aaagtgttgc agaatccaga aactgttggc ctgtaattcg       660
     tcaagagaaa taccctgtaa gagctaatgt tgcaattaga ataaaggcct tgtttgcttc       720
     tacctacctg tgcgaatcat tgttttcaaa tgagttttat taaaaataaa cacagaacaa       780
     ggttaactga cgaacacttg gtctcctgta ttccagcaag tgttagaagt tatacactaa       840
     atatcaagaa cattgttaag agagcatcta ctcaagtttc acattaaatt taagataata       900
     ttttaaaata ttacgaaata aaatttttat gttttgaaca aatagtgaag atttaaaagt       960
     ttaattgtta aatatggttg ttctacagaa ctgaaaaatt aaaaatccag caattactgt      1020
     actttcaaaa gatgtagatc attttgatac ggtggtatga aatagtagat cgcgaagtct      1080
     ttgtggttgc ctacccctg                                                   1099
//
ID   hAT-23_DTa  repbase;    DNA;    INV; 3030 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   08-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-23_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3030
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6240-6240 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(367..1086,1090..2226,2236..2454)
FT                 /product="hAT-23_DTa_1p"
FT                 /translation="DSSSSSGDKRIGEFTLISNKIRSGQYSMSKKRGRSNV
FT                 WNIFASIINEKDEIVKNLVACKKCYKVQSASHGTSNLKRHKCYTASEKERD
FT                 ANTVHLNRDSKQRLTKIATEWTIRNCRPFQIIADEGLEKFADFLIHLGANY
FT                 GNGLKAKHVLPHPTTISRNVSDLYKAEFSRVKIEIQSIRTNNMAYSVTTDA
FT                 WTENFTQASYVSVTMHYIRDASFISRVLGIESMDADPSTGMKLTLFKFTKQ
FT                 LFILGANLKKRVQNCLKEFGCNLEFDDPIIVTDRGANMIAAYKNHSHIHCV
FT                 NHLLNNVIEKTFKNVPELAAMSDSCNKLVKFFKKSGENSKMENSLKGFCPT
FT                 RWNTIFYTMRSIELEWSEINTILITKKQESRLNDLNLRNLKEVTKLLAEFE
FT                 RSSKELEGDSYPTLHLVIPHLQNLKKKCSFSEMDSDLLSKFKSSLTHHLVS
FT                 IVDPFITHFHKLAVFLFPPANKLILXDSDERQSIMEDCKLYINKYVSKETD
FT                 TNPPQNAVGSLSSNALFSDWVGQLRDDSNHNIVESEVKEYHNTVVKLTDDF
FT                 NVLKWWAANKERFPLLFKASCQILGTPASSASSERSFSQASNLITEKRSAL
FT                 IKSDRMVKKIMFLHNNITKKDFAKLLSFNNNITKKTDYNLLNTFTIKLTNY
FT                 VLLSNVIYIGLFETADMEKRSLKIGLPNPQAIPKIRKSAGQTF"
XX
SQ   Sequence 3030 BP; 1037 A; 533 C; 581 G; 877 T; 2 other;
     tagagccctg cacaagcaac ctgacttgtt tgtcaaacct taaaaccaac tgacctactt        60
     gaaacccatt tgacctgggt cgtttgggtt tgggtatttg ggtaaacggg tcaattttta       120
     cccaaaccca aatacccaaa acaaaaacag gtcaagtagg tcaggtcaaa aaatattata       180
     ggtaaggtcg gtttgggttg ggtttcaagt aaccctttct acttcagttc tattacattt       240
     tcatattgaa tcgaaatatt tgtacgttca gtgagcagca acttagaaaa atggaggaat       300
     ccacaagtgt aagtattcca cggtatttat gcacataagt gtggtaactt ttatggataa       360
     atgtaggact caagttcttc ttctggcgac aaacggatag gcgaatttac tttgataagt       420
     aataagataa gatccggaca gtactcgatg agtaagaagc gcggacgaag taatgtgtgg       480
     aatatttttg caagtattat aaatgaaaag gacgaaatcg ttaaaaattt agtagcttgc       540
     aaaaagtgct acaaagtcca atccgcctct cacggtacgt ctaacctaaa gcgtcataaa       600
     tgctacactg catcggaaaa agaacgagat gctaatactg ttcatctgaa tcgtgatagt       660
     aagcaacgac tgaccaaaat agcaacggag tggacaataa gaaattgtag accattccaa       720
     ataatagctg atgaaggctt ggaaaaattt gcagatttcc taatccattt aggagcaaat       780
     tatggaaatg ggttgaaagc gaaacacgtt cttcctcacc caaccacaat atcgaggaat       840
     gtgtccgacc tgtataaagc agaattttct agggtcaaaa tcgaaatcca atctattcga       900
     accaataata tggcttatag cgtcaccact gatgcttgga cagaaaattt tacgcaggca       960
     tcgtacgttt cggtcacaat gcattatatt cgtgatgcta gctttataag cagggttctt      1020
     ggaatagagt caatggatgc tgacccatca accggtatga aattaacatt atttaagttt      1080
     acaaaataac aattatttat tttaggcgct aacttaaaaa aacgtgttca aaactgtttg      1140
     aaagagtttg gatgtaattt ggaattcgac gatcccataa tcgtaaccga tcgtggcgcg      1200
     aacatgatag ctgcatataa aaaccactcc catatccatt gtgtcaatca tcttttgaac      1260
     aacgtgatag aaaaaacatt taagaatgtg ccggagctag cagcaatgtc ggattcgtgc      1320
     aataagctgg tcaaattttt caagaaatcg ggagaaaatt ccaagatgga aaattcgcta      1380
     aaaggatttt gtccaactcg ttggaatacc attttctata cgatgcgatc tatagagctt      1440
     gaatggagtg agatcaatac aattttgatt acgaagaagc aggagtcacg tttaaatgat      1500
     ttaaacttaa ggaatttaaa ggaagtgaca aaattgctgg ccgaatttga gcggtcgtct      1560
     aaggagttgg aaggagattc ataccccact ttacatttgg ttatcccaca tctccaaaat      1620
     ttaaaaaaaa agtgtagttt tagcgaaatg gattcggacc ttctatcaaa atttaaaagt      1680
     tcccttaccc atcatctagt cagtattgta gatccattta taacacattt tcacaaatta      1740
     gcggtatttt tgtttcctcc tgccaacaaa ctaatattam ttgattctga cgaaaggcaa      1800
     agcattatgg aagactgcaa actttacatc aacaaatatg tcagtaagga aacggacacc      1860
     aacccccctc aaaatgctgt cggatcatta agtagcaacg cgctattcag tgattgggtt      1920
     ggccaattaa gggacgattc aaatcataat attgtcgaga gtgaggtgaa ggagtatcat      1980
     aataccgttg taaagctgac agatgatttc aacgttctaa aatggtgggc agcaaataaa      2040
     gagagatttc cgcttttatt taaagcaagc tgccaaattt tgggaactcc ggcgagcagc      2100
     gcatcttccg agcgttcatt ttcccaagcc agcaatttaa taacagaaaa aaggtcggca      2160
     ttgataaaaa gcgatcgaat ggtcaagaaa attatgtttt tacataacaa cattacaaaa      2220
     aaagactgat tataatttgc taaattatta tcctttaata acaatattac aaaaaagact      2280
     gactataatt tgttaaatac atttacaata aaattgacca attatgtgtt attgtctaat      2340
     gttatctaca ttggtttgtt tgaaacagct gacatggaaa aaaggtcctt aaagattgga      2400
     ctccctaatc cacaggccat tcctaagatt cgaaaatcgg caggacagac attttaatga      2460
     gggcgcaaga tattgaacgt ccctcccttc ttaacatttc ccaatatgtt gcgtcttctg      2520
     aacatcgagg atcggttaat ctttatttta aaattataag tgttaaatgt tattgacctt      2580
     ttgggccgca agaagtcgca gccaataatt gagtagatta tttacatata ttaaaatgat      2640
     atataaaaaa tggacctcaa gaattcgcga ctaggcgatg agttaagaaa ataatgctca      2700
     cataatatcg acttatttat twaatatatt ttttataaaa ttaatagaaa ttattagccc      2760
     cagcaaaaag tgtttgggta accccgaaac ccaactgacc tacttgaaac ccatttgacc      2820
     tgggtagttt gggtttgggt atttgggtaa atgggtaaca ttttacccaa acccaaatga      2880
     cctgaaaatt ttggggtcgg gttgggtagg taatatttaa aaaaaagcct gacttacttg      2940
     aactgttttc aatgacagac cgaactactt gacctgaaat ttggtttggg tacccaaata      3000
     acccattttg tatacccatg cagggctcta                                       3030
//
ID   hAT-23_LMi  repbase;    DNA;    INV; 2540 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2540
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3050-3050 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(652..1269,1151..1876,1852..2094,2025..2327)
FT                 /product="hAT-23_LMi_1p"
FT                 /translation="MHPSVNADFLSSELRKEKNQELKNQLSVQQNMFTKPV
FT                 DKSVAATLTSYRVSNVLAKRRKPFEDGEFLKEAFREAADELFNNFKNKSEI
FT                 MAAIESLQLSSRTVTRRVETMSQDVFSQLKRDLDECCYFSMQLDESIDATG
FT                 TAQLPVFVRMVFKNFTVKEXLLKVISLKGHTRGECIFCCETTNLVRENPYT
FT                 KACKHYHRWSPSFKRFKAIQEENVFFAVKQLILSEKIPIQKLVSITTDGAP
FT                 ALRGSKNGFLALCQRDESFPQFLTYHCILHQQSLCGKFLNLNETMKTVVKI
FT                 VNKIRSHPLQRRLFKDLADELELQYGDLLLHTEIRWLSKGKVLQRFHKVLP
FT                 AIKLFLQEIEENSLLAYIEDPLWLMHFAFLIDLTEKLNELNLKFQGKDKDI
FT                 AEMISEVNSFIEKLCLWECCLKRGELRHFPTLKTQVEECETTYDGECYANM
FT                 IPLMLCKYDSTLKEDFNNRFSDFKKISVVTQFVSFPWANLELLNVSSSIEN
FT                 VFDVDGAAVELEIISLKMICFSKLLQNLKIVGLTGNNIIKNDLFLKTVAEP
FT                 KNCWPLIPQEKYPELVNVALRIKALFPSTYLCESLFSNMHFIKNKHRTRLT
FT                 DEHLDSCIRLSVTSYTPDISDIVKRTSPQVSH"
XX
SQ   Sequence 2540 BP; 823 A; 419 C; 490 G; 807 T; 1 other;
     caggggtcgg caacacgtcg atcgcgatct accgagtgct tatagatcgc gcgagtactg        60
     agagtgcaga agaaaaattg ttcaataaaa ttgacaattg tttttcgtag caatgaaaat       120
     gcgccatccg acacaacttg ttttattttt aacaatcgcg tagaactggt tgcttgattc       180
     ttaaaactgt gttctcgcat tagttcagcc gtacctgcgc accactagtt gctcactatt       240
     tccattcatc tttggcaatg tgtagtatgt tcggttccgt agtaggcggt gagtttgaaa       300
     gactgtttcg tgccttctgc caaagaatta atattagctc gttgctcttg ccgttcatgt       360
     tgttagaata aacttctttg gtgtccttcg aactacgaac ttcagtgttt tttaatgtgt       420
     gacgggatag aatgtgacat tcgaactgat ttgtaccaag aataataacg tcttaatgca       480
     acgacactta accataatga atagcctatt taaaaaacgt aaagtttatc attttcattc       540
     cgaatgggaa cacgagtttt tttgtaggga aagaaatggt acatgtattt gtttattgtg       600
     tcaagcgcga ttcatttgtg aaaaagaaac atcgagagac atttcaaaac tatgcaccca       660
     agtgtgaatg ccgatttcct ttccagtgaa ctgagaaaag aaaaaaatca agaacttaaa       720
     aatcagttaa gtgttcaaca aaatatgttc acaaaaccag tagataaaag tgttgctgcc       780
     accctcactt cgtatcgtgt ttcaaatgta ctggcgaaaa ggaggaaacc cttcgaagac       840
     ggtgaattct taaaagaagc atttcgagaa gctgctgatg agttgtttaa taatttcaag       900
     aataagtccg aaataatggc tgccatcgag tcgcttcaac tttcgtcaag aacggtgaca       960
     agaagagttg aaacaatgtc tcaagatgtt ttctctcaat tgaaaagaga cttggatgag      1020
     tgttgttatt tttcaatgca gttggacgag tccattgatg caacaggtac tgctcagttg      1080
     ccagtttttg taaggatggt ttttaaaaac tttactgtca aagaasaact tttgaaagta      1140
     atttctttga aaggccatac aagaggagaa tgtatttttt gctgtgaaac aactaatctt      1200
     gtcagagaaa atccctatac aaaagcttgt aagcattacc acagatggag ccccagcttt      1260
     aagaggttct aaaaatggtt ttcttgcttt gtgccaaaga gatgaaagtt ttccgcagtt      1320
     tttaacttac cactgtattt tacaccagca gtctctgtgt ggaaagtttt taaatttgaa      1380
     cgaaacaatg aaaactgttg tcaagatagt caacaaaatt aggtctcatc ctcttcaaag      1440
     acgacttttc aaagatttgg cagacgaact tgaactgcaa tatggtgatt tacttctcca      1500
     tactgaaata cgctggctca gtaagggaaa agtacttcaa cgtttccaca aggttttacc      1560
     agctatcaaa ctatttctgc aggaaataga agagaatagc ctgttggcat atattgaaga      1620
     tcctctctgg ctcatgcatt ttgctttttt aattgactta acagaaaaac tgaatgagtt      1680
     aaatttgaaa ttccagggta aggacaaaga tattgctgaa atgatatctg aagtgaattc      1740
     ttttattgaa aaattgtgtt tatgggagtg ctgccttaag agaggtgagt taagacactt      1800
     tccaacgctg aagacccagg tagaagaatg tgaaacaact tatgatggtg aatgttatgc      1860
     aaatatgatt ccactttgaa ggaagatttt aataaccggt tttcagactt taaaaagatt      1920
     tctgtggtaa ctcagtttgt atctttccct tgggctaacc tcgagctatt gaatgtatct      1980
     tcttcaattg aaaatgtttt tgacgtagat ggagcagctg ttgaactgga aataatatca      2040
     ttaaaaatga tttgtttctc aaaactgttg cagaacctaa aaattgttgg cctctaattc      2100
     ctcaggagaa atatcctgaa ttagttaatg ttgcactaag aataaaggcc ttgtttcctt      2160
     caacttacct gtgcgaatca ctattttcaa atatgcattt cattaaaaat aaacacagaa      2220
     ctaggctgac agacgaacac ctggactctt gtattcgttt aagtgtaaca agttatacac      2280
     cagatatcag tgacattgtt aagagaacat ctcctcaagt ttcacattaa atgtaagtta      2340
     taaatatttg taaaatatta tgaaataaaa tgtttgtttt aaacaactag tgaacatgta      2400
     aaagttttat tgttaaatat agttgtttta caatatttaa aacactaaaa atgtagcaat      2460
     catatatttt taaaagtaga tcactatggt acggtggtac gaaatagtaa tcgcgaaggc      2520
     tttgtggttg cctacccctg                                                  2540
//
ID   hAT-24N1_DTa repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-24N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-681
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6241-6241 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 681 BP; 219 A; 96 C; 124 G; 239 T; 3 other;
     cagtgttccc wgatcagggg ttttccccct agatttaggg gttttttgac gtgctagggg        60
     gaattttagg ggggaggaat ttttaggggg aaagtttagg ggtttttttt cgaaaattkt       120
     attacccaaa tgttttgaaa aaacactaga atatttgatt ttctaaaaaa ttgccgcgca       180
     tataaattac ctaaatatgg caaaaatatc aaaaaaatac tgcgcacgac tttactatcg       240
     agtgtaagtg ttaccagctg atggcggatt ctgggaaacc gcctttaagt tttctaactg       300
     tgattaccga aaaatttcgt atctggttaa taattgaatt taagtttaac atgcctccag       360
     tgcttccaaa aaccaatttc tcaaatgaag ttctcgaggt gatctcttaa aattcgatct       420
     cgttttgtag tatataaata aatatataca tgtatttcaa aatataataa taaatatatg       480
     ttaaacaaca aattactata cacagatttt tccaatctta acatttctac aacgtcatat       540
     tgagatattt ctwattttat tgtacatgtt cgaaattaac tgattttttg aatttagggg       600
     gaaaactgaa ttttttaggg ggaaatatcg actgtttgag attttttagg gggaaagctg       660
     aattttcatc tggcaacact g                                                 681
//
ID   hAT-24N1_LMi repbase;    DNA;    INV; 731 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.11, Created)
DT   09-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-24N1_LMi; hAT-24_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-731
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2925-2925 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 731 BP; 223 A; 122 C; 192 G; 194 T; 0 other;
     cagggccggc tctagggagg ggcgaaccgt gccgtcgccc agggcggcag atttttgggg        60
     gcggcaaatt cctgaatttt tatgtagttc cgataggtta aattaaacaa gacaatgaaa       120
     agtggaagtg tcttgcataa atgtagaaat gtgaaaataa gttggaaata cgaattgtta       180
     cagattgata gacattgata cagacaacag tgatatgcgt catcctacaa gcaaaataaa       240
     cgtgcaaggt tactatgtag aaggttgagc caatgtgttc ggcagcgttc gggtgcttcc       300
     gcgtgacgtc actgtggatt gtgagaagcg gtagaagggc gaggtgtatt cttgcgttcg       360
     acttcggcac tgttccgttt aattaacatt aatttaagaa aacaagtacg atataagcat       420
     aaacacaaag gaacagaatg ctactattta ctacggcctg aaaactctta tactgatttc       480
     tagtaatgaa aactgtaaaa ctgtatatta cagccccctt gacatttatt gtattctgta       540
     acactgacgc tgctttgatc ttaaagacat attcactaga aagagacgca tgagtgtaat       600
     atgtgaaaat aagacgtcat atttgaataa agctgacaaa gtcgaaaaat gtgtgtgtgt       660
     gtgttggagg gggggggggg gggcgcttga aatttttgca cggggcggca aaatccctgg       720
     ggccggccct g                                                            731
//
ID   hAT-24_DTa  repbase;    DNA;    INV; 2781 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-24_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2781
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(338..413,523..864,944..2496)
FT                 /product="hAT-24_DTa_1p"
FT                 /translation="MAPVLPKTKYVQKYKKEWETEACFKDWLKPSPGSNSK
FT                 ALCVYCKAEIGAHRKGLDEHAATKKHIRNVGEKKTLESNAVLDKFLKPKIE
FT                 ESRKRAELKIAAFISEHCSILAVDHLCEVILDLDINSQALKNIKLHRTKCT
FT                 GLIMNVLSPCPLEDLIIDIGDSHFSLIVDETSAIDTTKIMCIMVRYFSRTL
FT                 RKVCTSFYRLIQLENGTAEHMTKCIKDQLKADKLELENMIGIGIDGANAMA
FT                 GKNNSVSSRLTEIIPHLVTVKCLSHSLHLCAEHACDVLPKSLDFMVKESHK
FT                 WFSNSTCRNIAFQRLHKIVAGCDPKKIAKLSGTRWLARLSAIQTILDEWDS
FT                 LKLHFEMARTSERGDSGYKADTLFQMYNVENKLYLIFLQCSLKEIISVNKL
FT                 FQSESVEPLKPLKNLNDLLFSYMQKIVVPQQLAKANAQDLCEFPFKNFLMP
FT                 VDCINYGYLFNELSSNCLPDHLIYIKNRCRDCLIKLTEELQARVPKNTKCL
FT                 EKICVFAPKAASSQYKEDISELVESFKGLGIDIDATVTEYNLLHRVETKAT
FT                 SSDEYWATIDEQTDAGDNKIFGNVSKLAMSLLCLPFSNASVERAFSVFNIV
FT                 KDKLRNRIATKTADALFRIRLTLPNKCNSFEPSPQMYKLFNSEEVYKTNFL
FT                 DEVLEVIS"
XX
SQ   Sequence 2781 BP; 918 A; 493 C; 538 G; 832 T; 0 other;
     cagtgttccc agatcagggg ttttccccct agatttaggg gttttttgac gtgctagggg        60
     gaattttagg ggggagaaat ttttaggggg aaagtttagg gttttttttt tgaaattgta       120
     ttacccaaat gttttgaaaa aaaaactaga atatgtgatt tcctaaaaaa tggccacgca       180
     taaataccac ctaattattg caaaaatatc aaaaaaatac tgcgctcgac tctactatcg       240
     agtacaagtg ttaccagctg atgttggcgg attctgggaa cccgctttta agttttctaa       300
     ctgtgattac tggttattaa gtgaatttaa gtttaacatg gctccagtgc ttccaaaaac       360
     taaatatgtc caaaaatata aaaaggaatg ggagactgaa gcatgtttta aaggtgagtt       420
     aaattgtaca tggtaaaaca gttttaagcg ttaaatatac aatgcacaaa agtgcacaag       480
     ctgaatgtac atttatttac atgtactttt gttttattta agattggttg aaaccatcgc       540
     caggtagcaa ctccaaagct ttgtgcgttt attgcaaagc agaaattggt gcgcaccgca       600
     aaggcttaga cgaacatgct gcaacaaaaa aacacattag aaatgttggc gagaagaaaa       660
     cacttgaaag caatgctgtt ttggataaat ttttaaagcc caaaatcgaa gaaagtagga       720
     agagggctga gttaaaaatt gcggcattca tttcggaaca ctgcagtatt cttgcagtgg       780
     atcatttgtg tgaggtgatc ttagatttgg atataaactc tcaagctttg aagaatatca       840
     aactgcaccg cacaaaatgt acaggtatat ttaacgcatt tataatttat atacaaatgt       900
     attgcaacct ttttttggaa ttcactgtgt caattgtttt taggtctgat catgaatgtt       960
     ttgtcgccat gccctttgga agacctcatt atagatatcg gagattctca cttctcattg      1020
     atagtggatg aaacttcagc tatcgacacg acgaaaataa tgtgcatcat ggttcgttac      1080
     ttcagcagga ctctacgtaa agtgtgcaca tctttctatc gtcttatcca actggaaaat      1140
     ggaaccgccg agcatatgac aaaatgcata aaagatcaac tgaaagcaga taagttagag      1200
     ttggaaaaca tgatcggcat tggcatcgat ggagcaaatg caatggctgg aaaaaacaat      1260
     tcagtttcat ctcgattgac ggagataatt ccacacctcg tcacagtcaa atgcctttcg      1320
     cattcattgc acctctgtgc tgaacatgca tgtgatgttc ttcctaaaag cttggacttc      1380
     atggtcaagg agtcacacaa atggttctca aatagcacgt gcaggaacat cgcgtttcaa      1440
     cgcttgcata aaatcgttgc tggctgtgac ccaaaaaaaa ttgcaaagct ttctggaact      1500
     cgttggctgg caagactgag cgccattcaa acaattttag atgagtggga ctctctaaag      1560
     ctccattttg aaatggctcg tacgtccgaa cgaggtgact ctggatataa agctgacaca      1620
     ttgttccaaa tgtacaacgt cgagaacaag ttgtacttga tttttcttca atgctcacta      1680
     aaagagataa tatcagtaaa caaattattc caatccgaat cagtggaacc tttgaagccc      1740
     ttgaagaatc taaacgactt attgttctca tacatgcaaa aaattgttgt gccacaacaa      1800
     ttggcaaagg caaacgcaca agatttatgc gaatttccgt ttaaaaactt cctgatgcca      1860
     gtggattgca taaattatgg ataccttttt aatgagttgt cttcaaattg cttgccggac      1920
     cacttgatat acataaaaaa tcgatgcagg gactgcttga ttaaactcac ggaagaattg      1980
     caagcacgag ttcccaagaa cacaaaatgc cttgaaaaaa tatgtgtttt tgcaccgaaa      2040
     gcagcatcca gtcagtataa ggaagacatt tctgaactgg ttgaatcttt caagggactt      2100
     ggcattgaca tcgacgctac tgtgaccgag tacaatttgt tgcatcgcgt cgaaacaaaa      2160
     gcaacgtcct cagatgaata ctgggctaca atcgacgaac aaaccgatgc tggtgataac      2220
     aaaatatttg gcaatgtatc aaaactagca atgtcccttc tgtgcttgcc attttcaaat      2280
     gcatctgttg aacgagcatt ttcggttttt aacattgtta aagataaatt gcgaaacaga      2340
     atcgcaacca aaaccgccga tgctcttttt cgaataagat taaccttacc aaacaaatgc      2400
     aatagctttg aaccatcccc tcaaatgtat aagctattca atagcgagga agtgtacaag      2460
     accaattttt tagatgaagt tctcgaggtg atctcttaaa attcgatctc gttttgtagt      2520
     atatacataa gtataaagaa tatacatata tttcaaaata tattaaaaat aaataatatg      2580
     ttaaataaca aattactata cacagatttg tccaatctca atatttctac aacgtcatat      2640
     tgagatattt cttatttttt tgtatatttt cgaaattaac tgaatttttg aatttagggg      2700
     gaaaactgga ttttttaggg ggaaatatcg cctttttgag atttcttagg ggggaagcaa      2760
     aattttcatc tggcaacact g                                                2781
//
ID   hAT-24_LMi  repbase;    DNA;    INV; 2801 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2801
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3051-3051 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(758..778,721..933,940..1617,1625..1810,
FT                 1847..2071,2075..2374)
FT                 /product="hAT-24_LMi_1p"
FT                 /translation="MLTIVVSVGGNNIFSHSEENVDDCSFVSSPRRSDKRL
FT                 CSNDSHPRSCIISVTLSPLYHDNTKQAALLSTLSMSSDKPTVSHTGQQDQI
FT                 KQEESHCIIDAVLFLAKQGSPFRGTKEDGDFGDPHSGKFLNTIDLISYYSV
FT                 PLRLRIERHKKGQISYFYKNIQDEFRDLIADKIKQDIIKDILAAKYFSLMF
FT                 DCTPDISHNAQMTQVIRYVKSNDSEVVESFTDFFTVTDKTGEGLSQEILQK
FT                 LEQDGLNIKYCRGQSHDNGANRAGKYKGVQSRILQKNELAYFVPCAAHSLN
FT                 LVGANSADIQQDSARVDAVEAVYKHFHKVLKALEETETYKLSTPETKSETR
FT                 SILKNMRKLKFITLTCFWYAILKYFTIDKAVRNIQGLLGFLKTSRDSCTSE
FT                 AISEAKVLAEDNEVSTVFSEKRIRRKKKMADELCEDEVSNIHRKNKELTEL
FT                 STRFTALEKIGAKISFLCGVQIREMEVEDLKAKAAELAEDLSEEELEVESF
FT                 RQHALAVDRALQDSTASSTLSLIYKNKLVEGYPNLTTALKYILPF"
XX
SQ   Sequence 2801 BP; 923 A; 496 C; 568 G; 814 T; 0 other;
     cagggccgga tctagggggg ggcaaagggg gcagttgccc cgggcggcag aatttagagg        60
     gcggcaaatt ttgaccgact cttttttttt ttttttttta cagaatgtat ctttctggta       120
     taatttaata aaattaactg acacagaatt attaaaagta aaatgactgc aagaaatacc       180
     gaaatcattt aataaaacta aaattcctgg ttgctgactt cagtgttgcc ctgtcacagg       240
     tacttcagct aatcaaactt taaaaatcta ctagatatta gccagaatga gggagatgtt       300
     tgcgttattg cataagtaaa tgcacaatgt ttattaattt gcatagattt cctttttcag       360
     ataaatgaat attcatattt catatcaagg taatatttgt agaacaggtg aatttgaata       420
     acgttccagt ccttataaaa aaaaaaaaaa agtatttcag gtgcgcacac ttcttattga       480
     aagtcaaaag cattaaggat ctagagtcct ctctcggtag cggtggaatt gatagacatc       540
     tacacaggat actctgtaaa tcacatttaa ctgcctgaca gagggttcat cggaccactt       600
     ttatactatt tatctcccat tccattctcg aatagcgcgc gggaagaaag aacatctgaa       660
     tctctctgtt cgagctctga tttcacgtat ttattcagat gatcttttct acttatgtaa       720
     gtgggaggca acaatatatt ttcgcattcg gaggagaatg ttgacgattg tagtttcgta       780
     agtagcccac gtcgcagcga taaacgcctt tgttctaatg attcccatcc cagatcctgt       840
     atcatttccg tgacgctgtc tcccctgtat cacgacaata caaaacaagc tgcccttctt       900
     tcgactcttt cgatgtcctc cgacaaaccc acctgataag tatcgcacac tgggcagcaa       960
     gaccagataa aacaggagga atctcactgt attattgatg ctgtcctttt tctagctaag      1020
     caaggaagtc cttttagagg aacaaaagaa gatggtgatt ttggtgatcc acatagcggc      1080
     aaatttctaa atacaattga tctcatatca tactatagtg tcccccttcg tctgcgtatt      1140
     gaacgccaca agaaaggcca gattagctat ttttacaaaa atatacaaga tgagttccgt      1200
     gacttgattg ctgacaaaat aaaacaagat ataattaaag atattttagc tgctaaatac      1260
     ttttcactga tgtttgactg cactccagat atcagccaca atgcgcagat gacacaagta      1320
     attcgatatg tcaagtcgaa tgactcagag gttgtggaaa gttttactga cttttttaca      1380
     gttacagaca aaacaggaga aggccttagt caagagatac tgcaaaaatt ggaacaagat      1440
     gggttgaaca ttaagtactg cagggggcag tctcatgaca atggggcaaa cagggctgga      1500
     aagtacaaag gggtccagtc aagaatactt cagaagaatg aactggccta tttcgtacca      1560
     tgtgctgctc actctttaaa tttagtagga gcaaattcag cagacattca gcaagactag      1620
     gtgatctgca agagtagatg cggttgaagc tgtttacaag cattttcata aagttttgaa      1680
     ggccctggaa gaaactgaaa cttataaatt gtcaacacca gaaacaaaat cagagacaag      1740
     atctatttta aaaaatatga gaaaactcaa attcattact ttaacttgtt tctggtatgc      1800
     aatattaaaa taaattgctc atgttaatca gtttctgcga agttaatact ttacaattga      1860
     taaagctgtt cgaaacattc aaggactttt gggctttctc aaaacttccc gggattcttg      1920
     tacctctgaa gctatttctg aggccaaagt gctagcagaa gataatgagg tatcaacggt      1980
     attctccgaa aaaaggattc gaagaaagaa gaaaatggcc gatgagcttt gtgaggatga      2040
     agtatccaac attcacagaa aaaataagga ataattgaca gagcttagta ccaggtttac      2100
     cgcacttgag aaaattggtg caaaaattag ttttctgtgt ggtgtgcaaa ttcgagaaat      2160
     ggaagtggag gacttgaagg ccaaagcagc ggaactggca gaagatctta gcgaggaaga      2220
     acttgaagtt gaaagtttca gacaacatgc gctggcagta gacagagcct tgcaagattc      2280
     cactgcatca tcaacattaa gtttaattta taaaaataaa ttggtagagg ggtatcccaa      2340
     ccttactaca gcgttaaaat atatcttacc attctagttt ctgtttcgtc tggagaaaga      2400
     agtttcagca agctgaaact aattaaatac acttgaggag cacgactgct taacaaatct      2460
     gagtataata tccatagagc acaaacgagc tgcttctcta aactatgatg atatcaaaaa      2520
     cagttttgca gcaaaaaaag ctcgaaaagc gaaattttga attgattttt gtacgatgag      2580
     taatcttgta atatttttgt atgtattaaa attgttctgt tttcctttga tcttaattca      2640
     gtcaataaaa taagttcatg ttgtgagatt gtgacattta tttagaaata tgtaacccaa      2700
     ttagcgtcaa aaagtcgatt cttacagggg gggggggggt gaaagaaggg gcggcaaatt      2760
     taagcttgcc ccccttggca aatgtcctag atccggccct g                          2801
//
ID   hAT-25_DTa  repbase;    DNA;    INV; 2520 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-25_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2520
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           682..2064
FT                 /product="hAT-25_DTa_1p"
FT                 /translation="MLMIARDVQPFSMVDDDGFRDLIQNMDPKYRMPSRTY
FT                 FRDIMLPKLYNELRKDLECELEGVPYVAITTDGWTSRANEAYITVTCHFVN
FT                 KKFELVSAALSTANLVTPTNHSAVNIADTLRQILNEWDLLHKVVTIVTDND
FT                 VTMKKACQHLEITHFPCFAHTINLLVQEILKMEIIRPILTKCKAVVAFIKR
FT                 SSTAMAKFREAQMVTDPLGLVQEVPTRWNSAFQMIERILQTKEALSIALLG
FT                 TAKAPAPFSADEVDILEELCVLLRPFEKATKLISGGKYPTMSLVIPMVCEM
FT                 QVQVLSYKNSFKTPEVILAFDTLSDRFKDRFGHYETRTVAMIATMIDPRFK
FT                 KQGFQKTSNADQACSALEDDLHNVLNKLDQEQSSAASIAPTPPDPTDSSSY
FT                 FTMLQLKLNARTKTTGFDAIVLLRQHVESTNEPETCDPLHFWMVNIQIAYC
FT                 EFIKINYSYFSNVQRT"
XX
SQ   Sequence 2520 BP; 805 A; 467 C; 494 G; 754 T; 0 other;
     tagaggtgca gaaacatcga tggaaacatc gatgcatcga tgtttttcca atttttcaaa        60
     acatcgatgt ttttttttgg accatcgatg tttttagggc catcactgtt caaaggaaaa       120
     gtaacgttaa aggtttgtaa tttgttacat ttttcgtatt atgttaataa taatgtttaa       180
     ttatttgctt caatctatag ggaatggtat tggtggtgta ggcgcgacgc tgcttaagct       240
     ctatactatg gataaattct taaacagtaa gtaatttaaa aacagcgcag tacatgtcca       300
     actgcacgcc gtgtagttga ttgtgtacgt ccctcgtgtg gcggcatata cttatgtata       360
     atatacattt tattttgaat gttagttaca accaaggaaa acatagaagg cccgtctcca       420
     aaaaggaagc gaggaccatc ttgtgtgtgg caacacttta aaaaaattga ggacaagaca       480
     aaggccactt gtgctcactg tggaaaaacg ttaaaacagc agaaaataca tccaacctac       540
     tgaaccacct caaacggatt catccaaact ataatgtttg tgaagttgat aatcagtcac       600
     cgaagttgga tagttacatg caatggaatg tagagtatct ttcagactcc cagcaaaaaa       660
     aaaaagttgg acaagtatgt aatgctaatg atagcacgag acgttcaacc atttagcatg       720
     gttgacgacg atggattccg tgatttgatt cagaacatgg accctaaata tagaatgccg       780
     agcagaacct atttcagaga cataatgcta cctaagctat acaatgagtt aagaaaggat       840
     cttgaatgtg agctcgaagg tgtcccgtat gtagcaatta ccacggatgg atggacttcc       900
     cgggcaaatg aagcctatat tacagtaact tgccattttg tgaacaagaa gttcgagcta       960
     gtttcagcgg ccttgtcgac ggcgaatctt gtaacgccca ctaatcactc ggctgtgaat      1020
     attgctgata ctcttcgaca gatcttgaat gagtgggatc ttctacataa agtcgtaact      1080
     atagttacag ataacgatgt tactatgaag aaggcgtgcc agcatctgga aattacacat      1140
     tttccatgtt tcgcacatac cattaacttg ctggttcaag aaattttgaa aatggaaata      1200
     attcgaccta tactcaccaa gtgcaaggct gttgtcgcat ttattaagcg tagctcgact      1260
     gcaatggcaa aatttaggga agctcagatg gtgacagacc ccctaggatt agttcaggaa      1320
     gtcccaacaa ggtggaatag tgcgttccaa atgatcgaac ggattttgca gaccaaggag      1380
     gcactctcaa tagctctact agggacagca aaggctcctg ctcctttctc tgcggatgag      1440
     gtcgatattt tggaagaact ctgtgtgcta cttcgtccat ttgaaaaagc gacaaagtta      1500
     atatcgggcg gaaagtaccc tacaatgtcc ctcgttattc ctatggtgtg cgaaatgcaa      1560
     gtacaagtat tgtcatacaa aaatagcttt aaaaccccag aagtgattct tgcgttcgac      1620
     actttaagtg atcgcttcaa agatcgcttt ggccactatg agacacgcac cgttgcaatg      1680
     attgccacaa tgatagaccc aaggtttaaa aagcagggtt ttcaaaaaac tagtaacgct      1740
     gatcaagcat gtagcgcctt agaagatgac cttcataatg ttttaaacaa attggatcaa      1800
     gaacagtctt cagcagcgtc gatagcgcct acaccaccag atccaactga ttcttcaagc      1860
     tattttacaa tgcttcaatt aaaattgaac gcaagaacaa aaacgactgg ttttgatgca      1920
     atcgtattgc tcagacagca tgttgaaagc acaaatgagc ccgaaacatg tgatccctta      1980
     catttttgga tggtaaatat acaaattgcg tattgtgaat ttattaaaat aaattattct      2040
     tatttcagca atgttcaaag aacatgaagc cttaccagga gctggcaaaa aaatttttgt      2100
     gcattcctgc tacgtcctgc gagtccgaac gagctttcag caaggcgggg caaatcattt      2160
     cggatcgccg tacccgtttg aagtcaggca tcgtagatca gctaatgttc ataaataaga      2220
     actacaacag ctttaaaaag taatctcact agactgtaac atgatctcat ttgattgaat      2280
     ttttgatttt gttttttatt tttagtttcc taaatgaatt tttggttttg tttttcattt      2340
     ttaatttcat aaatgaataa atattttgtt ttatattttt aatacaaatt ccaatgagat      2400
     ttttaattat actttaaaat ataaattatt ttttggaaaa catcgatgtt tcattcgatg      2460
     ttttctgaaa aacatcgaaa aacatcgatg tctgcaaaca tcgatgtttc tgcacctcta      2520
//
ID   hAT-25_LMi  repbase;    DNA;    INV; 3870 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3870
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3052-3052 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(325..1119,1492..1926,1910..2122)
FT                 /product="hAT-25_LMi_1p"
FT                 /translation="MCIICNELIAVLKDFNIHRHYETKHGAQFDAFKDNVR
FT                 EHKFEMLKRRLCLEQNIFRKRVHESEAATKVSLRIAHEIAKRGKPFTDCDY
FT                 IKNCMLITAEELFPGKTEQCKVVSLSANTVARRVKDIASDLTNQLQERASN
FT                 FACYSIALDESTDISNNAQVLLFFRGVSSNFEVTEELAELISLYGTTTGDD
FT                 IFKEVQLTSATKCNLPLSRLKCISTDEGRNMCGKFAGFVGRINADYEAKGT
FT                 PKPLTGNVFFIRENFVQNPWICLVYQTENCFAFRQLPITERGSSFPRSFSW
FT                 GFLGHLKKELSCRFSDLDAHSKEIRILHNPFSCEVEDVPAVLQMEIIDLQA
FT                 DESMKDKFKNGSIVQFYKFLPKENYPLIKDFSRSWLSVFGTHTDVNKHFRC
FT                 SNLPNLNTGVTSVANIPQWRTFKRHFVDTTKLEPQFEKILVKKLISHFREK
FT                 VYLMYSLNFVLVKFYLRKQLLSMLMLATKCSICNDN"
XX
SQ   Sequence 3870 BP; 1164 A; 726 C; 796 G; 1184 T; 0 other;
     caggggtctc caaaatacgg cccgcgggcc ggatccggcc cgcggagggc tttcatccgg        60
     cccgcgcacc agtttcaagt aggttcctgg ctgtattttg cttttctgat ttcgtcttgt       120
     ttgtttcgtt cgttcgttgt agcgtgtccc ttgttacata aggttttctt tgtttgtaaa       180
     atctatacga tttttgtgcc gaataagtgt acactgtgca gtatgtcgcg ttgaaacgaa       240
     aaagagaaaa gtcgatgcct agtgtgacta ttcaataaaa catggggcgt gaaatacttc       300
     gtcatagaga aaagcaacaa agccatgtgt ataatctgca atgaacttat agctgtgctc       360
     aaggacttta atatccatcg tcattatgaa acaaagcatg gtgcacagtt tgatgcgttc       420
     aaagacaatg tacgtgagca caaattcgaa atgttaaaac gtagactgtg tttggaacaa       480
     aacattttta ggaaacgtgt tcatgaaagt gaagccgcta cgaaagtaag cttaagaatt       540
     gcccacgaaa tcgccaaacg aggaaagcca ttcacggatt gtgattacat aaagaactgc       600
     atgctgatta cagctgaaga attgttccct ggcaaaacgg aacaatgtaa agttgtttct       660
     ctatcagcaa atactgtggc gcgtcgagtt aaagacattg cttccgattt aacaaatcag       720
     ttgcaagaaa gggcatccaa ctttgcttgc tattctatag ccctggacga atctactgac       780
     atcagtaata atgcccaagt tctgttgttc tttagaggtg ttagctcaaa ctttgaagta       840
     accgaagaac tagcagaact gatttcccta tatggcacaa caacgggtga tgacatattt       900
     aaagaggtac agttaacttc agccacaaag tgcaaccttc ctctttctcg gctgaaatgt       960
     atctcaaccg atgaagggag aaatatgtgt ggcaaatttg caggttttgt tggcagaata      1020
     aatgcagact atgaagccaa aggtactccc aaaccattga caggcaatgt gttcttcatc      1080
     agggagaact ttgtgcaaaa tccgtggata tgtcttgtgt aatgagacct gtaatttctg      1140
     ttgtgaactt tatttgaagc cattgaatca aacaccacca attcaagtgt ttcctagaaa      1200
     aggttgaatc tttgtccagt gatctcccat accacacgcc acacggcagt aaggtgatta      1260
     acgtgtggta aaattttgtc aacttttttt gcttgagaat agagagaaat atttctaaac      1320
     cttagaagtt ctatcggacc aagagtagct atagaaatta gctttcttgg ctgatgttcc      1380
     tctccattta aacgaactga acaaaaaact ttaaggggag gataatatta tttgtgatct      1440
     ttacatgcac attaaagttt tccaacagaa gctaatactt tttaaaagta atatcaaaca      1500
     gaaaattgtt tcgcatttcg ccaattgcca atcactgaac gtggttcaag ttttccgcgc      1560
     tctttttcat ggggatttct tggtcatctg aagaaagagt tgtcttgcag gttttccgat      1620
     ttagatgcac actcgaagga aatacgaatt ttacacaacc ccttctcttg tgaagtggaa      1680
     gatgttcctg cagtgttgca aatggaaata attgatctac aagcagatga gtcaatgaag      1740
     gacaaattta agaatggcag tattgtacag ttttataagt ttcttcccaa agaaaactac      1800
     cccctcatca aagacttttc acgaagttgg ttatctgtat ttggcacaca cacagatgtg      1860
     aacaaacatt ttcgttgctc aaatttgcca aatctaaata caggagtaac ctcagtggcg      1920
     aacatttaag agacattttg ttgatacaac aaagttggag ccacagtttg aaaagatttt      1980
     ggtcaaaaaa ctaatttcac acttccgcga aaaagtgtac ctgatgtatt cactgaattt      2040
     cgtgttggtt aaattttact tacggaagca gttgctgagt atgttaatgt tggcaacgaa      2100
     atgttcgatt tgcaatgata attaatttac tgactggaac agggtacata aacgaacctg      2160
     ttaaccgtac agcacaatga acattaatta tttatttcaa cacaaagatc attctcctca      2220
     ttctgtgtga ttgagttttc aatgcacatt caattgttgt tgccaacatc agcatactac      2280
     gccaccgctg ccggaggtaa aattgtagcc ttgtgttttt gtaaaaccaa aaaatttcat      2340
     tattttcttc ttttgagaaa tgtgggatca acaaaaagtt gttctgtagg tcgcgtttgt      2400
     agctagtgtg ttgagttaaa taactcgcag ttaataattt tgtaggtttg gtgacagccg      2460
     attctagttg atgtaatgtt ggtagaggcg tgatgaatga tgggaagtga aggcagctaa      2520
     tcaggagtgg cgttcagtct gttaagaatg tccttacact ttgaaaacaa ttcggggttg      2580
     tggacggaca tattttttac gagtaacata gcaaaatcgt gacatacgcg ttgaaaatac      2640
     attgttttag aagatttact tgtaaatggt attgctgctc gtttcacagg tagaaattaa      2700
     gttttgctat taggtacctg cttaacaaca tacccaaaag tcattacgtt cgttgaaaaa      2760
     cttaaaaaac atagagaaac agtcactacg tgggcgtgac tttaattttg cagctttgag      2820
     ttgaacaagt cttttaaatt accaataaag gtaaatgtgc tcaatttcca ttaattagaa      2880
     aatctgttac atccatgtaa tggctgtttt tagatttcca ttacgatctg cattcccaac      2940
     agagttctac acactttgca acaacagata atttcgtgat taattcatgc catgggagag      3000
     aaagaaagac attcttattg tctgtctgaa cgccactcct gattggctgc cttcacttcc      3060
     catcattcat cgggccagtg ccaacatggg taaccactgg cgtgtcactt cgacgtaacc      3120
     aatgacaggc gtgaaacgat tgaatgtgtt tatagcgcgg gagctgaagc gactgtctgg      3180
     tttatttttg tgagtgtctg ttatactttc gcggcgttat gacagaccat tcgattaaat      3240
     gaatggaact gagtgaagtg aggaatgatt tttttttttt ttttacaaat gtatcattac      3300
     attttacagt acaaactgat ccatttacgt tcacgcatcc atataccgag cacccatgtt      3360
     ttaattacaa atactaagaa tttgaaatat tgatcgtttg caatggacat tacagtgtgg      3420
     tgaaaattta atatgtcgtc ataaatttcg tcggaacacg actgtttcac ttgacgctcg      3480
     taaacaaaca actgaccagc acaactgtcc ctgtgtgctg cacagctacc gctgccaaca      3540
     tcgtcacgta agtgcagtac gccgctgccg gtgatctgaa cttttaccac caacaatata      3600
     tacatgttaa gcagaagcag ccgtcaccta aactgcattt taacctagtt cacatgttat      3660
     tgatctttgt ttgcgggtgt aaagagtgat atgatggtga taatactgta tacaggttaa      3720
     attggggttt ccgccttatc agtgacgtca caggtcaaag taggcgttag tatcgcattc      3780
     ttcagtaatc gccaaatatg ctatccggcc cgcactgcga ttcggaactt gaaatgtggc      3840
     cctcgtggcc tagtaaattg gagacccctg                                       3870
//
ID   hAT-26_DTa  repbase;    DNA;    INV; 2621 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-26_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2621
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(546..1079,1083..1439,1381..1800,1748..2224)
FT                 /product="hAT-26_DTa_1p"
FT                 /translation="MVACRKCFNAYKFNGSTSNIVRHKCYVISYGSCVEPE
FT                 VEVGPETKRESVSLMTEWTLKNCRSFNIVHDSGLKNLAKFLIKVGAMYGTN
FT                 VDIDTLLPHPTTISRNIASLYEMRFNVVKDEISKYKEFGYSLTSDIWTDNY
FT                 LRSSYLSCTMQYIREGVLISRVLAIKSMEGEPSTGKNSIKNETLILTVLLG
FT                 LRVREKMSEILESFDCNLDEDRPVLVTDRGSNMIAAFKTYPHIHCLNHLIH
FT                 NVIEKAVKTIPDLTEMISQCSKLVKYFKKSGSNAKLGLKEQLSHSLEYFIL
FT                 FVTINDLKSNCPTRWNTSFYLLQSIDANWLDISNILMEKNETNRLDAVNIN
FT                 HLRSITQLLESFEGISKKLEGSKRATLHLAIPYINKLKKKCQPDSSDSPFL
FT                 TEVKSLLSEQISMTIYPNLSKFHKIALFLFPRTNEQTVAIYINHCFYFLEQ
FT                 TNKLLQFTSTEKHEILSECKDIMMQFVLAEVNSECVLSQPECQDDAFDDYV
FT                 IKQTQEPTVSRIDREVQGYSNMNVIYNDEFDCLAWWNSEKNVYPLLYKTSC
FT                 KIFSIPASSAASERAFSAARNLITEKRSTIAANPNNINKILFLHNNIEP"
XX
SQ   Sequence 2621 BP; 922 A; 411 C; 462 G; 826 T; 0 other;
     tagagccctg catgaatgga ttcaattttt aattttcgta gtgtgccatg aaattttgaa        60
     ctcattcaat tcaataataa attcacttaa ctgaatttaa attgagttga atttttattt       120
     aactcaaaat tcaaaaaacc ttttgaaatg aaatttaatg acattcaaat tcattctgat       180
     tgaatgaatg aatgaatcaa tctagtcgac ctgtctgaat tttacaaatt tgtcagaatt       240
     tatttttgct tcctacggaa aacaaccaga cgaaaaattc tttgaaaaaa attgtaaaaa       300
     tgtcgaccga aaatgtaagt aattttaatc gaaaaaaaga atatattttt gcttatcttt       360
     ttgaaccaga tgcaagtata aagatttttt ttgttaattt ttttaataga ttgaactgac       420
     gactgatatt gttaagcaaa agcttatgag tggaaaattt tcattttcca gcaaaagagg       480
     gcgcagtaag gtttggaaca tttttgcaaa aaattataaa tgacagcgga gaggaagtaa       540
     atgatatggt agcatgcagg aaatgtttca atgcatataa gtttaatgga agtacatcta       600
     atatcgtcag acataagtgc tatgttatct cttatggatc ttgtgttgaa ccagaggtag       660
     aagttggtcc agaaaccaag cgtgagagcg tctccttaat gacagagtgg accctgaaaa       720
     attgccgatc ctttaatata gtacatgatt cgggcttaaa aaatttggca aaatttttaa       780
     ttaaagtggg ggcaatgtat ggcactaacg tcgacattga tacacttttg ccacatccga       840
     cgaccatttc gagaaacatt gcaagcctct acgaaatgcg gtttaatgtt gtaaaagacg       900
     aaatcagcaa gtacaaggaa tttggatatt ccttgactag tgatatatgg acggacaact       960
     acctgcgatc atcttattta tcgtgtacta tgcagtacat aagggaaggc gttcttatta      1020
     gtcgtgtctt ggctattaaa tcaatggagg gtgagccgag cacaggtaag aattctattt      1080
     gaaaaaatga aactctaatt ttaactgttt tattaggttt aagagttcga gaaaaaatgt      1140
     ctgagattct tgaaagcttc gactgtaacc tggatgaaga caggcctgtt cttgtaactg      1200
     acagagggtc taatatgata gctgctttta agacatatcc ccatattcat tgcttgaatc      1260
     acttaattca taacgtaata gaaaaggcag ttaaaacaat accggacttg actgaaatga      1320
     tatcccaatg cagtaaattg gtgaagtatt ttaaaaaatc tggatctaac gctaaattag      1380
     gacttaaaga gcaactgtcc cactcgttgg aatacttcat tttatttgtt acaatcaatt      1440
     gacgcaaatt ggctggacat ttcgaatatt ttaatggaaa aaaatgaaac taatcgtttg      1500
     gatgctgtta acataaatca tttaagatca attacacagc tcctggaatc ctttgaagga      1560
     atttcaaaaa aattggaagg aagtaaaagg gcaaccttgc acctggccat tccttacatc      1620
     aacaagctta aaaagaaatg ccaaccggat tctagcgata gccctttcct aacagaagta      1680
     aagtcgttat tgtccgaaca aatttctatg actatttatc caaatttaag taagtttcac      1740
     aagatagcac tgtttttatt tcctcgaaca aacgaacaaa ctgttgcaat ttacatcaac      1800
     tgaaaaacat gaaattctgt ctgagtgtaa agatataatg atgcagttcg tcttagccga      1860
     ggtaaattcc gaatgtgttt taagccaacc tgaatgccaa gacgatgctt ttgacgatta      1920
     cgtcataaag caaactcaag agcccacggt gagcagaatc gatcgagaag tccaaggata      1980
     cagcaatatg aatgttatat ataatgacga atttgactgc ttggcttggt ggaactcaga      2040
     aaaaaatgtg tatccgttac tatataaaac tagttgcaaa atttttagta taccagcgag      2100
     cagtgccgcc tcggaaagag cattttcagc tgctagaaac ctgataactg agaaaagaag      2160
     tactattgca gcaaacccaa acaacataaa caaaattttg ttcttacaca acaatattga      2220
     accataatta aaacttttta aactcctttc ataaattatt tttattaccg taataggtaa      2280
     atacgccttg tcttgggata tactttaata aattagcgta aagttgtaaa attgttgatt      2340
     atagctttac tttcaaaatt gtgcagaaat taaaagcata aaggcagacg gagtcgacta      2400
     ggctcagtgt gaaacatttg aatttattcg aatgaagcta agtaatcttt gaattttatg      2460
     tgtatttaat tctaggccct ctgtttaaaa tgttgttatt tttgaattca tgcctttcat      2520
     tcattcattc gattctatta aactcaaaat tcaaattgat ttattcacaa ttaggaaaaa      2580
     aattcaaaat aattcattga atccattcat gcagggctct a                          2621
//
ID   hAT-26_LMi  repbase;    DNA;    INV; 2632 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2632
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3053-3053 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..2329
FT                 /product="hAT-26_LMi_1p"
FT                 /translation="MHKLASTILFCHRYTFIKKTRSDSDVRCTTCNTEFCV
FT                 SHGGKSDIEQHLNSSKHKKAEIAAASSRSVTSFFRPNSATERELQLAAIEG
FT                 AWAYHVVEENHSFRSNDCASKLLKNWFEPKFSCGRTKTEAIVVNVIAPHSC
FT                 EMLQKELQEVSYVTVFTDASNHGEKXIFPVMIRYFLPLQGVCVRILELDER
FT                 PGETADIVTNYLTDVLAKYYLHSKIIAFCGDNTNSNFGGAARKGTRNVFHK
FT                 LKMVLGRDILGVGCAAHIVHNTIKTAADCLPIDVEMVVHKIYYHFHSYTVR
FT                 VESLKDFCSFAEIEYRKLLGYSNTRWLALMPAVERILALFEGLRSYFLSQE
FT                 KCPVIIKSFFENPLAKVVVLFLHNQATTFHQAVLQIEGELTTGIEVAMALS
FT                 NLKENMIQKKENNFIPHAVKCALHELEDESEAKVEDFQTVANAFYGSCIDY
FT                 LTVWTDRFKVYEKFAWILLNNVLKWSDVEKCMSVIRNASCESTNVDDNAIF
FT                 SEFVYVKQFATADKIAQWNDEGKQVHLRWVEMFQYFFSQKLSFSNFSKVVE
FT                 FGLSLPGTNAPVERVFASMNKIWTSEKTQLKVETLKALLLTKINFKYSCLE
FT                 FFNYLKQNERLLKNILSSEKYVH"
XX
SQ   Sequence 2632 BP; 838 A; 425 C; 536 G; 832 T; 1 other;
     taaagtgacc agacgtcccg ttttgaacgg gacagtaccg ttatatagcc tgttgtcccg        60
     gtgtcccgac aggttttgtc gggacgcctg tttgtcccgt tttgttagaa aataggaatt       120
     attttttatt ctgtgttacg ctacgtaata tttaaatctt tatgtccata attgctgaga       180
     atgaaagtta tgttatcgat ggacaaaatt cgttacgaaa aacaactaat ccaaatgacg       240
     acactgccga caatgcttgt atgccgacct tcacttcgac aattcgattc caatctctca       300
     gcgacagtcg gattgtgatg tgcattgttt aagcagttcc gtgagagatt caagatgcct       360
     aaacgaaagt gtgtgttcac tgctgcgttg caagaaaagt aagtacctta ttttatggca       420
     gaggacttag tatttatgga gcaatttaaa ttaactcgga atagtcatgc ataaattggc       480
     aagtactata ttattctgtc ataggtatac attcataaag aaaacgcggt ccgattctga       540
     tgttcgttgc accacttgta acaccgagtt ttgcgtctct catggaggga agagtgacat       600
     tgaacaacat cttaattcca gtaaacataa aaaggcagaa attgctgctg cgtcatccag       660
     aagtgtaact tcatttttcc ggccaaattc agcaacagag cgtgaattgc aattggctgc       720
     aattgaagga gcctgggctt atcatgtggt tgaagaaaat catagttttc gctcaaatga       780
     ctgtgcttcg aaactactaa aaaactggtt tgagccgaaa ttctcttgcg gtcgcacgaa       840
     gactgaagcc attgttgtga atgtaattgc ccctcattct tgtgaaatgt tacaaaaaga       900
     gttgcaggaa gtcagttatg ttacagtgtt tacagatgct tccaatcacg gggagaaaaa       960
     katttttcct gttatgatta ggtacttttt accgctacag ggtgtctgtg tccgaatttt      1020
     ggaacttgat gaacgtcccg gcgaaacagc tgatattgtt accaattacc tgactgacgt      1080
     gcttgcaaaa tactacctac atagcaaaat aattgcgttc tgtggtgata ataccaatag      1140
     taactttggt ggagctgcac gtaaaggaac aagaaatgtt tttcacaaac ttaaaatggt      1200
     attgggtcgc gatatccttg gggttggatg tgcagcacat atagtgcaca acacaattaa      1260
     gactgctgca gattgtttac ctattgacgt agaaatggtt gttcacaaaa tttactatca      1320
     ttttcactca tacacggtac gagtagaatc actgaaagat ttctgcagtt ttgctgagat      1380
     tgagtacagg aaattattag gttatagtaa cactagatgg ttagcactaa tgccagcagt      1440
     tgaaagaatt cttgcacttt ttgaaggact gaggtcctat tttcttagtc aggaaaaatg      1500
     tccagtgata ataaaatcct tttttgaaaa cccgttggca aaagttgttg ttctttttct      1560
     ccacaaccaa gccacaactt tccaccaagc agttctccag atagaaggtg agcttacaac      1620
     aggtattgaa gtagctatgg ctctttccaa tttgaaagaa aatatgatac agaaaaagga      1680
     gaacaacttt atcccacatg ctgtaaaatg tgctttgcat gaattagaag atgaaagtga      1740
     ggcgaaagta gaggatttcc aaacagtagc taatgctttc tatggttcat gtattgacta      1800
     cctaacagtc tggactgaca gatttaaagt ttatgagaaa tttgcatgga ttttacttaa      1860
     caatgtctta aaatggagtg atgtagaaaa gtgtatgtca gtgattagaa acgcatcttg      1920
     tgaatcaaca aatgtcgatg ataatgccat tttcagcgaa tttgtttatg ttaagcaatt      1980
     tgctactgca gacaaaattg ctcagtggaa tgatgagggg aaacaagttc atttgagatg      2040
     ggtagaaatg tttcagtatt tcttctctca aaagttatca ttcagtaact tttccaaagt      2100
     agtagaattt ggattatcac tgccaggtac taacgcacct gtagagagag tttttgcaag      2160
     catgaacaaa atatggacat cagaaaaaac gcagttgaaa gttgaaacgt tgaaagcatt      2220
     gttgcttacc aaaataaatt tcaaatacag ctgccttgag tttttcaatt acttgaagca      2280
     gaacgagaga cttctgaaga acattctttc ttcagaaaaa tatgtccatt aataaacatt      2340
     tttatgaatt atataacatg ataattgttt tggtgtttat atttatagta atagcaatgc      2400
     tatacacatt ttgtatattg taataaaatg tgattttttc gtaaagaata taatgagttc      2460
     tctgataatt acattaattt tgtttattaa taataaatac ataaataagg tttgaggtta      2520
     tctaattgca ttaacttaaa agggtaaggt taacatattt tttaaaaaag gggggggggg      2580
     ttgtcatttg agaagtgtcc cgttttcagc ttgagaaaat atggtcacat ta              2632
//
ID   hAT-27_DTa  repbase;    DNA;    INV; 2375 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-27_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2375
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental hAT sequence.
XX
SQ   Sequence 2375 BP; 813 A; 415 C; 490 G; 657 T; 0 other;
     tagctataaa attataggta ctttttgaat ataagctaca tgactataaa tacaatttca        60
     atctcatata ttgtggttat tcgagaaatt cttgagaatc ttaggcttat tgtccgtgag       120
     gagtgggaaa tgcagtctaa aattgaggta tggtcgagac gcgattgtag agcgtctgcc       180
     gtttggcaga tcaatatgta agtgttgttt ctaagaattt gagtaaccgc atacaattaa       240
     aatatttaac actaaggttt tacccgaatc gcaaagcatt aaattaaagc tcctatctgg       300
     ggagtatgaa ttatgcaaca agcgcgggaa aagtaaggtt tgggaaactt tcgcgaaaat       360
     caaggacaat cgtggcgctt gtatcgacaa cttggtgggg tgtagaaaat gttttgcagt       420
     ccttaaattc agtaaaagta cttctaattt aacccgtcac aagtgcttta aggacagtgc       480
     agagaattcg acgagtgatg caagcgttca actggattta gaatctaaaa gagatgttgt       540
     caaagtcgta acccaatggt ctgtggaaaa ttgtcgtcca tttgaaatga ttgcagattc       600
     agggctagaa aaatttgctg acacaatgat acagctagga gccaagtttg gacataaact       660
     gcaggcaagt gcagctttac cacatccaac aacggtctcc agaaatgtga gtcaattgta       720
     tgcagaagaa tttcaaaagg tgaaacgaga aataggccgg attagacaac agcagatagg       780
     ctacgctcta acaactgatg cgtggactga cagtgtggtg cagtgtgggt atgtgtccgt       840
     gaccattcat tatgtctcac agggaaaact tcttagccgg cttttatcaa tagaatcaat       900
     gaaaggatta tcatcaactg gtaaagaagt gctggtattt gttgtacata atttaatatt       960
     tatattaaac aggtgctaac cttaagaaag ttctgaaagc tagcttagaa gagttcgatt      1020
     gccatctgga cgaagatgat cccataattg tcacagaccg cggcgctaat atggtggcag      1080
     catatcgtgg gcacagtcac attcattgca taaatcattt gataaataac gttgttgaaa      1140
     aaaccttcag ggacgtttta gagctcggaa acatcttgca aaaatgtatc agattagtcc      1200
     gatattttaa gaagtctgga gagaatcaaa atctggaaac tactttaaaa agtttctgtc      1260
     ccactcggtg gaatacagcg ttttatacgt tgcgttcagt cgaacaaaat tggactaaaa      1320
     tctcggctgt attactaaac aaaaaagagg atggtcgtct tagggacctg aactgcaatg      1380
     agttaaaaga aatcacggac gtacttgaaa tttttgagca agcctctaat attttagaag      1440
     gggatcaata tccaacactt catatgcgtc attccccaaa cgtattcacc aatagtcatg      1500
     cctcccgaaa ctagaagatt gcgacctaat cgctagtatg aaagcaaact ttaccttgtc      1560
     gcatatggca ctccatagtt attcctcata taacgaaatt tcataaattg gcagtactac      1620
     tttttcctct tgcctgtaaa tgatacaagt cattcacaga cattgaacga gcaacgacaa      1680
     ttgacgattg caagatcaat aatgaaacaa tttttaattg aagatacaga taaaaacctt      1740
     gaaggcacgc catccaaaaa atgcattttt tggtgaattt gtgcagctcc gttgggaatg      1800
     aaacacagga ccaagctata gagagggaga taagatcata cacaaataat atgacccaat      1860
     acacagaaga cttcgatcct ttaaagtggt gggaaacaaa taaaacaaat tttcccctgc      1920
     ttttcaaggc cagttgcaaa attttgagtg taccagcaag cagtgcctct tcagagagag      1980
     cattctccca agcaggaaat ctaatttgtg tgaaacgggc cgctattacc tcaaaaaccc      2040
     ttctggtaaa gcaaattttg ttaattacac aacacacatt cgaaatcaat ccaaattata      2100
     agtgaaagtt ctgtacaaaa accatgttac caaaaaatgg gtgttggaca aaaaacacat      2160
     ctgtctaaat ataaaaatca attcaaaaaa agtttcgtct tgtgaaaaat atttatttct      2220
     gtgatctaat cagattgaaa gacttagaga aatttcagac ctgagtcatg actcataggg      2280
     agtcaagagt catgaggagt catgagctat aggagtcatg agctatagga gtcatgagct      2340
     ataggagcca tgaggttttt aggtcagatc aagta                                 2375
//
ID   hAT-27_LMi  repbase;    DNA;    INV; 2385 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2385
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3054-3054 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(392..841,799..1290,1223..1654,1658..1951)
FT                 /product="hAT-27_LMi_1p"
FT                 /translation="MQLMDTEKLKWKNLLARLLDITLFLAKQNLAFRGHDE
FT                 GQDSTNKGNFLELVKLLSNYDVVLKEHILNLEHSKPQKVSYLSPEIQNEFI
FT                 NVLADHVKSKLVNEIESAKYFGIMFDSTADISHIDQMSEVIRFVKIADRKL
FT                 EIKEVFLVFFLQKIGNQRSISCFFPLKGKKAADLSEEILNNLEKDVLDVMM
FT                 CRSQGYDNAAVMSGICGGVQAIIKAKNKKAIFVGCIDHSVNLCGRHSFAQN
FT                 VSCVTFFGTVESIFTFLSASTSRWAVLIKHSNVSVTRLSTTRWSAHYAAVK
FT                 VLAENFDGVVAAIEELCDQQENKYWQKTLMALLLQLRNYVTNKKIKTQEAF
FT                 TFHCYMYFWNDVLREVNCTQVALQSKGLSLDQSVIKIEALRLYMEQNRGRI
FT                 VEEAIGLAEKKSEDYDIPIERRIRRKKRMAGEQTTDAELSLRAEHQKDMLE
FT                 CLDRFSTELRTRSSIQDVASLFEVVQPNTLLLDNNEELKLDVSKFTGFYDE
FT                 TPLRNSKAEKTFESCRCYSFQLGVSRLLKIHCEMGFYRLSSKPYALSKVIC
FT                 DDLRISCFV"
XX
SQ   Sequence 2385 BP; 770 A; 399 C; 501 G; 715 T; 0 other;
     cagtggcgta gctaaggggg ggggtgggcg tggcccaccc gggtgtcacc cgtagggggt        60
     gacacccgac tgcaagtgaa acaaagcacg gatcaaacac aaaaggtgat gtgcggaatc       120
     ttacaaaaga atggttttat aaggtgatgc ctaatggtga aaaaattctg cggtcttgga       180
     tggtttactc tcctataacg aataacctct actgcttctg ctgtcgctta tttgctgtca       240
     ccagtagtac cagtgtaaga tctacattta taactggatt tcagaagtgg tggaaactga       300
     atcctaaagt tgccgaccac gaatctacaa atgaacatct ggaaaagtgg aaaactttgg       360
     aaatgggcct aaaaattaca taaaagaata gatgcaatta atggatactg agaaactgaa       420
     atggaagaat ctcttagcta gactattgga tataactttg tttttggcta aacagaacct       480
     agcatttcgt ggacatgacg aagggcaaga ctctacaaat aaaggcaatt tcttggaact       540
     agtcaaacta ctgtcgaatt atgatgtggt gttgaaagaa cacatcttga acttggaaca       600
     tagcaaacca caaaaagtat catacttgtc gccagaaata cagaatgaat ttataaatgt       660
     tttggcggac catgtaaaat ccaagcttgt caacgaaatt gaatctgcta aatattttgg       720
     tatcatgttt gatagcacag ctgacatttc acatattgac caaatgtccg aagtgattcg       780
     ttttgtgaaa attgctgaca gaaaattgga aatcaaagaa gtatttcttg tttttttcct       840
     ttaaaaggga aaaaagccgc tgatctaagt gaagaaattc ttaacaatct tgaaaaagac       900
     gttttagatg ttatgatgtg tcgttcacaa ggttatgaca atgcagctgt tatgagcggc       960
     atatgtggag gtgtacaagc tattattaaa gcaaaaaaca agaaagccat ttttgttgga      1020
     tgtattgatc attcagttaa tttatgtggc cgacactcat ttgcacaaaa cgtgtcttgt      1080
     gtaacatttt tcggaacagt agagagcatt tttacatttc tttctgcttc cactagccgt      1140
     tgggcagttc ttattaaaca cagcaatgta tctgttacaa gactctcgac aacgcgttgg      1200
     agtgctcatt atgctgcagt aaaagtactg gcagaaaact ttgatggcgt tgttgctgca      1260
     attgaggaat tatgtgacca acaagaaaat taagacacaa gaggctttca catttcattg      1320
     ctatatgtac ttttggaatg atgttctaag ggaagtaaac tgtactcagg ttgctttgca      1380
     aagtaaaggc ttgagtcttg atcagtcagt tataaaaata gaggcacttc gtctttatat      1440
     ggaacaaaat cgaggtcgta ttgtagaaga ggcaattggt cttgctgaga aaaaatcgga      1500
     agactacgac attccaatag aaagacgaat tcgtcgtaaa aaacgaatgg ctggtgaaca      1560
     gaccaccgat gcagaactct cactgagagc agaacatcaa aaggatatgt tggaatgtct      1620
     tgaccgattc agtactgaac tccgaacaag atcatagtca attcaagatg tcgcctcatt      1680
     attcgaggtt gtgcagccaa ataccttgct tttggacaac aacgaggagc tgaaattaga      1740
     tgtgtcaaaa tttactggtt tttatgatga aactcctctt cgaaattcca aggctgagaa      1800
     gacatttgaa agctgcagat gttacagttt ccagttgggt gtgtctagac ttcttaaaat      1860
     tcattgtgaa atgggatttt acagactctc ttccaaacct tatgctctct ctaaagttat      1920
     ttgtgacgat ttgcgtatca gttgcttcgt gtgagaggag ctttagtaaa ctgaaattaa      1980
     ttaaaaacta cttgcgatcc acaatgagca acacgaggct aaataatctt gccatgttaa      2040
     ctatcgaaca tgaggcaaca caaaacatta attttgaaga tgtgatttct gagttcgcag      2100
     ctgttaaagc tagaaagaaa ttttaagtgt atcttccttc agtagttagt attctgaaga      2160
     atttatacta atgtattgtg tataatactg tttcataatg tataatgcat aataaaagaa      2220
     tattaatgta ttataaattg cagtttgatg attaattact ttcttttgta ttacttaaaa      2280
     tcatacttgt aacgtatcta gttgtattta tttttaaagt ttttattcgt ggggtgacac      2340
     cgccgagaac cgccccgggt gccaccgacg ctagctacgc cactg                      2385
//
ID   hAT-28N1_LMi repbase;    DNA;    INV; 1085 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-28N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1085
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3316-3316 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1085 BP; 312 A; 210 C; 249 G; 313 T; 1 other;
     cagtggcggc tactccttga ggactctggg gcggcgccct cccaaaaata tccaacacgg        60
     aatacgtacc aatcgttaat cacaaatcta cttgaataat tttcgtgtag cagcagcccg       120
     tgtaagtgaa tgaccaatgt ttttagtcta ggtagtctgc cagccaggct caccgaatgt       180
     tttcagaatg gactgactgt cggactctac gcgatccgtc cgcgccgtgt aaaggctggc       240
     tacgggcgct tggggtgagt gggggtactg ggggttgggt gggggtagtg tgctgaaccg       300
     ggccgcttag gacggcgtcc gmgccaacgg gcgcgaaata tacaaaggcg caccgccacc       360
     ggtcaggcag tttctaacag gtgccctgcg tgtgataact agtatcgttg ttgtgaaggt       420
     gcgtgttgtt gcctgttttt ctagttccct atttagaatg aataatataa atagcgttaa       480
     ctacatttta acatttggta gtgaaaaatt gacttttgaa ggaaagttgg aattaaaaag       540
     gttaggacca ccgagacctg atttgaacat tgtacagaca caaaatgcgt gcaaaagcaa       600
     aagtagtttc actaggaaat ttaatcctgc tttatataaa cacaccaata tataagcata       660
     ccaatggtat tactacattt gttggtgaca gtcttctaat ttcagtaaca tatgtttgtc       720
     gctgacgaag catttgtgtt ctctgaacac ttacttatat agttacacac acaacgaatt       780
     tacttcttac tttatattat tttaaggtac agttttgggt ctcttgtgaa atctaataaa       840
     atggagttac aaggttttca ttgcctgcag aaaatattaa aaacgacata tttgtgcgta       900
     aatttgttcg tattttggta taggaggaaa aagtcgtgtt agatgaaggg ttaaattacg       960
     taactagcta ataaaattaa tgctatattc tccccgttca agaaatgttc tgaagggaca      1020
     aaatgtcgtg tacaattgaa gagacatgcc gcccctccta ataaacagcc caccagccgc      1080
     cactg                                                                  1085
//
ID   hAT-28_DTa  repbase;    DNA;    INV; 2568 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-28_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2568
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(354..1237,1293..1776,1830..2225)
FT                 /product="hAT-28_DTa_1p"
FT                 /translation="MGRKRDFFVRDFFTFNAKSNKSLCKICNHSLKGSYFT
FT                 NLRRHLKETHKKIYEEKEDQIENGPQEKKTKFAVSLSSLEVTEACVQLVTD
FT                 EKVPFKLLDSAPFKKLTEQIFSGLNMTPITSRTIMKLVSDKYDYEKKNLQK
FT                 SLKNKIISVKVDMASRHSRGVLGLNIQYYSNNSIEIKTLGIIELHQKQTGL
FT                 NLSFEIEQILEEFSVSKQQVYTLTSDNGKNIIKAIEYLNDDSALLDDFEND
FT                 DLVEDFHVFSISSIRCAAHSIQLAVNDFLKNERRQDIIKIARKMIKTLRTP
FT                 NFRLAISNTSLPQPVVDIPTRWNSTYSMLKSACIYKKFTEDHLKENMKLSI
FT                 SQWTDIELLLTVLEPIFKATQKLQSEQLYFGDFYKLWLETKLAVKSMNNVH
FT                 SKDLTLCLESRENILTTNDVMLSAIYLDPRICRILIKDPNQQELARAHLIK
FT                 LMRQILTLNKPECKKLIEDDDSKPTSSHNTSSSGLLSEFLNSIEVESNEES
FT                 DNDDDQLKLASREIQNYLPKPIDLKTDLMEYWEEKKFIYPNLYRLAKVVHC
FT                 VPATQVSVERSFSALKLMLSDLRCNLSSESIKKLMFLKLNK"
XX
SQ   Sequence 2568 BP; 926 A; 426 C; 424 G; 792 T; 0 other;
     cagggatcgt aaataagagt taacctattc aaaaaaattg acatataact cttattctcc        60
     aatttttatt ataaaaattg acaaataact cttatttgtt gatttttata ataaaaattg       120
     aaaataaaga ttgaattgaa attactcttg aactgtaagg tgcattggtt tacaattttt       180
     gcatatacaa tctacgcttt aatacctttc tgttgatatg ccatatgtcc ccaaactatt       240
     ttttataatg taccaaatga gtaaaataaa atagtagaag cgtgcattat aacttttgca       300
     acaaatcgtc aatactacct gtgtaaagcc tgtcatatgt gtaacgtatc acgatggggc       360
     gtaaacgaga tttttttgtg cgcgactttt ttacatttaa tgcgaaaagt aacaagtcat       420
     tgtgtaagat ttgcaatcat tctttaaaag gatcttattt taccaactta agaaggcatc       480
     ttaaagagac tcataaaaag atatatgagg aaaaggagga tcaaatcgaa aatggtcccc       540
     aggagaaaaa aacaaaattt gcagtatctc tctcttcgct tgaggtaaca gaagcatgtg       600
     tgcaactcgt aacagatgaa aaagtgcctt ttaagctgtt ggactcggct ccgtttaaaa       660
     agttaacgga acaaattttt tctggcttaa atatgacacc aattacatcc cggacgataa       720
     tgaaattagt atcagataag tatgactatg aaaagaaaaa tcttcagaag agccttaaaa       780
     ataaaattat atcggtaaag gtcgacatgg catcgcgaca ctccagagga gtgctaggac       840
     ttaatattca atattattct aataattcta ttgaaattaa gacattaggc ataattgagc       900
     tgcaccagaa acagaccgga cttaacctta gcttcgagat cgaacaaatt ttggaagaat       960
     tttctgtgtc caaacagcaa gtatatactc tgacatcgga taacggaaag aacattatca      1020
     aggccataga atatttaaat gacgattctg cactgttgga tgattttgaa aatgacgatc      1080
     ttgtggaaga ttttcacgtc ttctctatat catcaatacg ctgcgcagcc cactcgattc      1140
     aactggcagt taacgacttc ttaaaaaatg aacgtcgaca ggacattata aaaatagcta      1200
     ggaagatgat aaagaccttg agaacaccga atttcaggta atctagtgaa ttaacattca      1260
     aaaaaaaaac ttaaaatttc tgaaatttgt aggctagcaa tttcgaacac gtcccttccc      1320
     cagccggtag tcgacattcc gactaggtgg aattctacat attcgatgct aaaaagtgca      1380
     tgcatttata aaaagtttac cgaggaccac ctcaaagaga atatgaagtt atcgatctcc      1440
     caatggacgg acatagaact gcttctaact gtactagagc caattttcaa agcaactcaa      1500
     aaattacaaa gcgaacagct atattttggt gacttttaca agctttggct tgaaacgaaa      1560
     ttagccgtaa aatctatgaa taacgttcat agtaaggatc taacgctctg cttggaaagt      1620
     cgtgagaata ttctcacaac aaatgacgtg atgctctctg ccatttattt ggatccacga      1680
     atttgtcgga ttttaattaa agatccaaat cagcaagagt tagccagagc acatttaata      1740
     aaactaatgc gacaaatact tactttaaat aaaccggtaa gtttaattat tagaattcat      1800
     atatttacta taacctgttt atttaacagg agtgtaaaaa actgatcgaa gatgatgatt      1860
     caaaaccgac ttcatctcat aatacatctt caagcgggct tttaagcgaa tttttaaatt      1920
     caatcgaagt agaaagcaat gaggaatccg acaacgatga tgatcagctt aaattggcgt      1980
     ctagggaaat acaaaattac ctcccaaagc caattgattt aaaaacggac ttaatggagt      2040
     attgggaaga aaaaaaattc atctatccaa acttataccg actggcgaaa gttgtacatt      2100
     gcgttcctgc tactcaggtc tccgtagaac gctctttttc ggccctgaaa ttaatgctgt      2160
     cggatttaag gtgcaatcta tcgtcagaat caatcaaaaa attaatgttt ctaaaattaa      2220
     acaaataaat ctcgtattat atgtgtattg gaatgcaatt tacttaaccc ggttttgtaa      2280
     ttatatgtcg cctgttattt tgctttaccc atttggtaca ttataaaaaa tattctggtg      2340
     acatatggca tatcaacaga aaggtattaa agcgtagatt atatatatac aaattttaaa      2400
     ccaatgcacc ttacagttca agagttattt caattcaatc tttattttca atttttatta      2460
     taaaaatcaa caaataagag ttatttgtca atttttataa taaaaattgg agaataagag      2520
     ttatatgtca atttttttga ataggttaac tcttatttac gatccctg                   2568
//
ID   hAT-28_LMi  repbase;    DNA;    INV; 3045 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3045
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3055-3055 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(707..1234,1084..1356,1465..2484)
FT                 /product="hAT-28_LMi_1p"
FT                 /translation="MLRTSWTTDGVTDIKHLADKVKKHKLSELHINSNIEF
FT                 VMLGKVDIRCQLDTAYRLRIKKFNEDVSKNRYILSKLIDCIKFCGKFELAL
FT                 RGHDETDASDNPGIFRGLVNLMAELDSTLKGHIEKTNNRVFGAFQNNSNEL
FT                 LDSIYTVCHQLISKEMSKQIMSLLKLMKRQIVLPCLNSCFWGFPKQFKRTA
FT                 GLYIYCVPSVNFQRNVKTDYVAIEVDETTDCATLSQLVFIIRYELKGKVYE
FT                 RFINFVTPKDHTADAISMKCSTSLKNGANFVHCYAHQLNLIVERCATQHKE
FT                 LRIFFSNLQGFSTFFSKSVKRTAVLDNVVKKRLPRNADTRWNFKTRIVNTV
FT                 FKYKKEIAECLGIIEDDASNDYSTTRKAVGLGKLIIDQEFLFWLEFFSKLL
FT                 PHCDILFNQLQCRDVDSAKALKNVSDFKSAIQLTRNSLDVDHHWETGNGNE
FT                 EITGPKRFRFLDCRKTVAKEVCDLVMANIDERFAFINHLSAAVLLQPSLFP
FT                 KHKLLFPEKEFQTTVKIFHLNGNELRQELTVIYSRNDFQTANGALTLLNCI
FT                 YENNLETVLPESVKLMRIICTIPMTTAESERCFSTLKRIKTFTRNTMKTER
FT                 LRKNTFKCA"
XX
SQ   Sequence 3045 BP; 975 A; 542 C; 659 G; 869 T; 0 other;
     cagtggcggc tactccttga ggactctggg gcggcgccct cccaaaaata tccaacacgg        60
     aatacgtacc aatcgttaat cacaaatcga ctcgaataat tttcgtgtag cagcagcccg       120
     tgtaagtgaa tgatcaatgt ttttagtcta ggtagtctgc cagccagggt cagcgaatgt       180
     tttcagaatg ggctgactgt cggactctac gcgatccgtc cgcgccgtgt aaggctggca       240
     acgggcgctt ggagtgagtg ggggtactgg gggttgggtg ggggtagtgt gctgaaccgg       300
     gccgcttagg acggcgtccg cgccaagggc gcgaaatata caaaggcgca ccggcaccgg       360
     tcaggcagtt tctaacaggt gcagtgcgtg tgatactagt gtcgttgttg tgaaggtgcg       420
     tgttattgcc taactgtttt tctagtttcc tatttagaat gaataatata aatagcgtaa       480
     actacatttt aacatttggt agtaaaaatt gacttttgag ggaaagttgg aattaaaaag       540
     gttaggacca ccgagacctg atttgaacat tgtacagaca caaaatgcgt gcaaaagcaa       600
     aagtagtttc actaggaaat ttaatcctgc tttatataaa cacgcagact ggctttgtgg       660
     atgtgaaata agaaatgctt tcttctgcta cacgtgtctg gtaagaatgt tgcggacatc       720
     ctggaccaca gatggggtaa cagacattaa acatttagct gataaagtta aaaaacataa       780
     attaagtgaa cttcacataa acagtaacat cgaattcgtt atgcttggca aagtcgatat       840
     tagatgtcag ctggatacag cttatagact gaggattaag aagtttaatg aagatgtttc       900
     taagaatcgt tacatcctta gcaagttgat cgactgtatc aagttctgtg ggaaatttga       960
     acttgcacta aggggacatg acgaaacgga tgcttcagat aatcctggta tttttcgggg      1020
     tttggtcaat ctcatggcag aactggattc cacgttgaag ggacatattg aaaaaaccaa      1080
     taatcgtgtt tttggggctt tccaaaacaa ttcaaacgaa ctgctggact ctatatatac      1140
     tgtgtgccat cagttaattt ccaaagaaat gtcaaaacag attatgtcgc tattgaagtt      1200
     gatgaaacga cagattgtgc taccttgtct caactagtat ttattattcg atacgaatta      1260
     aaggggaaag tatatgaaag gttcataaat ttcgtaacac ccaaagatca cacagctgat      1320
     gcaataagta tgaagtgttc aacgagctta aaaaactaaa gattgacgac tctccagaaa      1380
     aatgatagct cagagttatg acggagcttc ggttatgagt ggcaggcaca ctggggtgca      1440
     ggcaagagtg aaagcagtgt atgaggagca aattttgtac actgttatgc ccaccaactc      1500
     aatctcattg tagagcgctg tgcaacacag cacaaagaac tgagaatatt ttttagcaat      1560
     ttacagggat tctctacttt cttctcaaag tcagtgaaaa gaactgccgt actggataat      1620
     gttgtgaaga aacgtcttcc aagaaatgct gacacaagat ggaattttaa aacgcgaatt      1680
     gtgaacaccg tatttaagta caagaaagaa atagctgaat gccttgggat aattgaggat      1740
     gatgccagca atgattattc aacaactagg aaagcagttg gacttggcaa acttatcatc      1800
     gaccaagagt ttctcttttg gcttgagttt ttcagtaagc tcttgccaca ctgcgatatt      1860
     ttatttaatc agctgcaatg tagagatgtt gatagtgcga aagctcttaa gaatgtctcc      1920
     gatttcaagt cagctataca actgacgaga aactctcttg atgtcgatca tcattgggaa      1980
     accgggaatg gaaatgaaga gatcaccggc ccaaaacgat tccgtttttt agactgtcgt      2040
     aaaactgttg caaaggaagt ttgtgacctt gttatggcta acattgatga gcgtttcgca      2100
     tttatcaatc acttgtcagc agctgtatta ttgcaaccca gtttgtttcc aaaacataag      2160
     ctgctattcc ctgaaaaaga atttcagacc acagttaaaa tatttcactt aaacggaaat      2220
     gaactgcgac aggaattgac agtcatatac agtagaaatg atttccaaac agcaaacgga      2280
     gctttaacac ttctcaattg tatatacgag aataatttag aaactgtgct accggaatca      2340
     gtgaaactca tgcgtattat ttgtacaata ccaatgacaa cagcggaaag tgagaggtgt      2400
     ttctctacac tcaaaagaat caagactttc accagaaaca caatgaaaac ggagagactt      2460
     agaaaaaaca cttttaaatg tgcataattt taatgaactt gtaattgacc attttgctga      2520
     agggaaggag agaagactgg acttcgtcta caaacatatt aattaaggta agaacgctat      2580
     tttgatttta tttcatacca atggtaggca atgaaaacct cgttactaca tttgttggtg      2640
     acagtcttct aatttcagta acatattatg tttgtcgctg acgaagcatt tgtgttctct      2700
     gaacacttac ttatatagtt acacatacaa cgaatttact tcttaccact ttatattatt      2760
     ttaaggtaca gtttttgggt ctcttgtgaa atctaataaa atggagttac gaggttttca      2820
     ttgcctgcag aaaatattaa aaactacata tttgtgcgta aatttgttcg tattttggta      2880
     taagaggaaa aagtcgtgtt agatgaaggg ttaaattacg taactagcta ataaaattaa      2940
     tgctatattc tccccgttca agaaatgttc tgaagggaca aaatgtcgtg tacaattgaa      3000
     gagacatgcc gcccctccta ataaacagcc caccagccgc cactg                      3045
//
ID   hAT-29N1_DTa repbase;    DNA;    INV; 2048 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-29N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2048
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6242-6242 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 2048 BP; 731 A; 311 C; 305 G; 701 T; 0 other;
     cagggaccgt aaataatcat tattaatttt ttttttaata aaaaaatcat ggtcaaagaa        60
     caatcctaga aaaaaaagaa ctataccagt acacttttta agcaccatag tttcaatatc       120
     cggtttaatt tttatttttc caatttttat ttaaaactcg aaggataatc gttatttttt       180
     gagtttttta taaaactcta aaagtaatga ttattttttg agttttattt caactctaga       240
     aataatgatt attttttgag tattattttc cgcttgacaa ataacgctta ctttttgatt       300
     tttattttct gattgaaaaa taaaacttat tccttgagtt ttattttttg atcagaaaat       360
     aaaactcgaa gtctaatttc tttgaattca agaggttagg ctgtgaaagt ggttagcaaa       420
     tatactaagt agaccacggc caacaaatta aggatatttt taagtttgta caattaccgg       480
     gaaccgccaa aaacaaagac aaagtactcg tcttaagcaa gtagagcaaa acattaagta       540
     acgctgcagt cgtgtgccaa attaaaatgg gcatctaaga gcgatcctag cggtcggtag       600
     tgacaccgca gaccatgcaa ggcatctaaa catggttact taaagaaatc taatattctt       660
     cctaatgcca acacacaaaa agaagctaag gtgattcact gttcttaaat gtttctaaag       720
     aattcgcggt ttgtattctt atatgataaa gaatcttagg tgttgccgat aaactcttaa       780
     atccagagag gaacacaaac ataaacaaaa aatcgcaaat ttttaaatag atgatggcca       840
     tgtagctaaa tactggtaaa atggcgtcac caaagacgct ttattatatg atataaaaag       900
     cgcaaattct gtaaaagatc atcttttttt caacatcgat tacactgtgc agcattttta       960
     gtgtttttta aatttaccta aactgcgttt tccgaaaagt tccccgacgc aaggattctt      1020
     agcaaaagga cctcaaagtt cgaaaaatgc tgaaattggc caactttcca gaaatctcag      1080
     aggcaaacgg atgcatagtt tgattcgatg tataagtttt ttaaaagata cactctttat      1140
     ctttcgaact ccatacttag aataattttt ttaaggcaga aacaaattct agaaaacata      1200
     gtcaaaaaac ataaaagtat acagctgcgg tcaaaatagt agtagtgttg ccgccctggt      1260
     tattttaaag tttgttgttg taattgatct tttcctggta atattgtatt gattataatt      1320
     ttactattag actaattgga taaaaaaagt tacaacatca aacttttaaa aacacagggc      1380
     ggcaacacta ctactatttt gaccgcagct gtatgttttt aagttttttg actatgtttt      1440
     ctggaattta tttctgcctt aaaaataaat cctaaaatta ttaaattatt aattatattt      1500
     tcaaaagtag atgatgtcta taatcttacc accctgggtc agtcattctt aaagttggcc      1560
     acctttctgc ttttcgaacg cataacacct gatttggctt cattatatgt aagttttagg      1620
     cagagaattt tttcttggtt tttggcggtt tccggttatt gtataaaatt aaaagtgccc      1680
     ttaatgtgtt ggccgtggtc tacttagtac atttgctaac cgcttttaaa gccaaacctc      1740
     ttaaattcaa agaaattgga cttcgagttt tattttctga tcaaaaaata aaactcaagg      1800
     aataagtttt atttttcaat cagaaaataa aaatcaaaaa gtaagcgtta tttgtcaagc      1860
     ggaaaataat actcaaaaaa taatcattat ttctagagtt gaaatacaac tcaaaaaata      1920
     atcattactt ttagagtttt acaaaaaact caaaaaataa cgattatttt tggattaata      1980
     aataaactca aaaaataatc attaaagatt gagtttttgg ataaaactta taatcattac      2040
     ggtccctg                                                               2048
//
ID   hAT-29N1_LMi repbase;    DNA;    INV; 797 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-29N1_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-797
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2926-2926 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 797 BP; 234 A; 183 C; 173 G; 207 T; 0 other;
     cagtggcggc tcgtacaaaa tttgaccagt gtgctacaat attacaaaaa taaacaggaa        60
     acaaaatata ctaaaataaa aagcgtgact gacaatggaa ataacggagc ttagcaatat       120
     ccccaccacg tcatctgcgt tctacacaag tgaccaatga aactgcttgg ctgaaaagcg       180
     cagtttcact cgcatgttgg ctatacatta ctaatgttgt ttgtgattga agttttattt       240
     acagaaatta aaaatttgga ctcagaggta tttgaatacg agcctcacac aagtaggttt       300
     gagagacaac gcgcaagacg cctgagccag cgcgctattt gactctgtat gccgcaatat       360
     tcgtcatata ctattcttcc gcaaccgtta cacgcagcgc gaagagaaat attgatctgg       420
     tgctgcagtc ggtctcagca cacatgagtc gccaggcctg acgtcacgtc tgcgcatgcg       480
     cactagcgaa cagacgactg cgccgcctct ctgcgcacgt accagcgcgg ctgaatccca       540
     cttcagcaca cggagctggt ttccagctat cgcggcgaga gcgctccaaa atgcgttttc       600
     atccttatta ctagcattgt aatacgtatt ggaagggaat tggcataatt ttattgtgat       660
     atctggatcg cattccaaga gaaaggatgt aattttacag cgatttctcg cttgctttcg       720
     aagagaaatg gcataatttt agtaatatat ttacagtgtg ctgcagcaca ttagcacatt       780
     atcaccagcc gccactg                                                      797
//
ID   hAT-29_DTa  repbase;    DNA;    INV; 3199 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-29_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3199
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. 8-bp TSD.
XX
SQ   Sequence 3199 BP; 1112 A; 532 C; 567 G; 988 T; 0 other;
     cagggaccgt aaataatcat tattaatttt ttttttaaca aaaaaatcat ggtcaaagaa        60
     caatcctaga aaaaaaataa ctataccagt acacttttta agcaccatag tttcaatatc       120
     cggtttaatt tttatttttc caatttttat ttaaaactcg aaggaaaatc gtaattcttt       180
     gagtttcttt gtaaaacttt aaaagtaatg attatttttt gagttttatt tcagctctgg       240
     aaataatgat tattttttga gttttatttt ccgcttgaca aataacgctt actttttgat       300
     ttttattttc tgattgaaaa ataaaactta ttccttgagt tttatttttt gatcagaaaa       360
     taaaactcga agtccgattt ctttgaaatt aagaggtttg gctttaaaag cggttagcaa       420
     atgtactaag tagaccacgg ccaacacatt aagggcactt ttaattttat acaataaccg       480
     aaaaccgcca aaaaccaaga aaaaattcac tgcctaaaac ttatatataa tgaagccaaa       540
     tcaagtgtaa tgtgttcgaa aagtttaagt gtgactgact aagtgtgtgt atattttctt       600
     ttgttttatg ttgcataatt aagggaagtc acttcgtttg gcttatcctt tttgtaattc       660
     ccaaatagtt ctgggaaata atttatgaca tcctggctaa aatcagtatt tcgttgtcac       720
     aacttgaaag tttttcgatt gcgatttagt gtacaaaact cgcgtaagtt ttcttttcaa       780
     atgggacgca aacttaataa tcgccctcgg gattatttta attttaacgc gaaaacaaat       840
     gtgtcggagt gcaaaatttg taaaaaagta tttaccggta attatgtgtc aaatttaaaa       900
     cgccatttgc aagagcagca ttatgaggta tttaataatc agaatatcca aagagccgga       960
     gaaagccctc caaaaaaaaa aacaaaattt tcaatgagcc tcagcaaaga ggaagttaca      1020
     gaagcttgca tcagctttgt gacgaccgaa aagatgccgt tttcgttatt ggattcggaa      1080
     cccttcaaag tgctaacgga gcaaattttt agtgggctcg gtatgaatcc aatttcttca      1140
     cgaaatgtaa tggctgtagt cggaaaaaaa gtgatgaaat caaagacaca attcggaagt      1200
     cactaaagtc aaaagtcctt agccttaaaa tggacactgc gacccgctgt aatcgtggaa      1260
     tattgggcat caatgtacaa tactacgatg gcaggcgtat ttgcattaaa acattgggtc      1320
     tcattgaact gcataagcga catacggcag tgaacctttg tgatgaggtc gaatcgatct      1380
     taatggactt caatatttcg aaaacccaaa ttttctgcgt aaccacagac aacggcaaaa      1440
     atatgttaaa gaccgtagac cttttaaata aggaggttga caacgaacgt agcgatcatg      1500
     aagaagatat cgacgaagaa ggcttactta aggatatcaa ggtttattca atagaatctg      1560
     ttaaatgtgc agcacacacc ctacaattga gtgtaaaaga ttttttgcaa aaccttggct      1620
     gtcacgaagt agttgataaa gctcgaaaag tggtcaaaac tttaaggaga cctgtttaca      1680
     ggtatgtttg tatgaatctg tacatttatt ttattgttaa agtttatttt ttataggctt      1740
     ataacaatcg caaagggtct tccccagcca gaagttgatg tagccacttg ttggaactca      1800
     acatatacga tgttgaagaa gcttttactt tttgaacaat tctgtgagca agaaaaggat      1860
     atacccctca atctggactc ttcggactgg gaatcaatga aaggtgttgt tgatgtactg      1920
     cagcctgttt acgcagccac gaagaagctt cagagcgaac aactttttat gggagatttc      1980
     tataaaatgt ggttggagct caaactgtct ataaaggcaa tgtctactcc caacagcatc      2040
     ttgttggaag actgcctaca gaaaagggaa gctactttgc tggagaacag agccgttcta      2100
     tcagcggtat atctggatcc gagaatacga cgagctctta taaaaaacaa ctcaagcctt      2160
     atcacagcac ggaccagaaa aaagctattt tcccaaatta aaagggttca ccgcaacgta      2220
     agtcaataaa tatataatat tgaataaaca aataaattct taaataggat aatgatgaaa      2280
     atgttccgag ggaggaacca tcaacatcgt cgacgagttc ctcaaattcc gaaaccctat      2340
     tgaacgagtt cctcaattcc attgaagttg actcgaacga tgaaaactcg gatgatgaaa      2400
     tggatgctga cctgaaaata gcttgcagtg aaatcgataa ttataacccc aaaccgatcg      2460
     atttaggtgc cgatattatg gtgtactggg aggaaaaaaa attcgtttac ccaaacttgt      2520
     atctgctggc tatggtagtt cactgcgttc cagcaacgca agtaagtgta gaaaggtcct      2580
     tttctgcgct taaattagta ctaacagaaa tgagaacaaa cctttcgagc gactccttag      2640
     aaaaattgct ttttgtaaaa ttaaatgcat aaaataaaaa ctgtttatac aaaaacttaa      2700
     attattaatt atattttcaa aagtagataa tgtctataat cttaccaccc tgggtcagtc      2760
     attcttaaag ttggccacct ttctgctttt cgaacacata acacctgatt tggcttcatt      2820
     aaatataagt tttaggcaga gaattttttc ttggtttttg gcggtttccg ggtattgtat      2880
     aaaattaaaa gtgcccttaa tgtgttggcc gtggtctact tttgctaacc gcttttaaag      2940
     ccaaacctct taaattcaaa gaaattgaac tcaaggaaca agttttattt ttcaatcaga      3000
     aaataaaaat caaaaagtaa gcgttcttgt caagcgaaaa ataaaactca aaaaataatc      3060
     attatttcta gagttgaaat aaaacatttt tacaaaaaac tcaaaaaata acgattattt      3120
     ttggattaat aaataaactc aaaaaataat cattaaagat tgcgtttttg gataaaactt      3180
     ataatcatta cggtccctg                                                   3199
//
ID   hAT-29_LMi  repbase;    DNA;    INV; 3083 BP.
XX
AC   .
XX
DT   24-APR-2014 (Rel. 19.11, Created)
DT   24-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3083
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3056-3056 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(731..1114,1118..1231,1381..1563,1641..1760,
FT                 1742..2254,2258..2509,2455..2814)
FT                 /product="hAT-29_LMi_1p"
FT                 /translation="MFSQAVKLRFSASSFIGRLCRTQMTGGILLSSLFPLS
FT                 VTLCTFAEEVFRGVFLRESARYVLCEQHGEFCHDLLRGHFPVDLWKRNKVK
FT                 ELGRPTPVLNLSQKAIGGGKKSEYTRKFSTKVYENSGLRMTNALFCFPCLL
FT                 FGNMMVSTGGVKDLGHFNALIKKQRKSNSVGNSNLLEGARRDGSSKSRCLL
FT                 GLVDSISDIDNAVKEHVQGNRFLGFSKPFKMSCSTLCCFRKDTVSIVIRYE
FT                 KNGGHMKGSGFFHPEGHXADALVLVFCSSTCILNVIEPFFKDAPHKIIAQT
FT                 YDGASVMSGCKGGVQARIKAVYPNAHFVHCYAHQLNLIVEHAASQNQSARV
FT                 FFLNVSGFSAFFSRSSERLSALEKLAARRIPSGPATRWNFKSRTVNVVHEN
FT                 KSLLLECLSMLEKSPSDQTCCQAVGLRRIYRMKNSSFGYHSSTKCLIEIFM
FT                 YSQLQARSVDAVIIKGSVSRFIQAINNIRASIDDIDAAATAAATSQSKRRK
FT                 ISLCRHSDAREVCDRITTEAVIVSKPCTRSLRQDYHRGRDRFQALDHLDAA
FT                 KLLDSSKFEEYSRRFPGRELNVAVQAYTMLEKPRLMTELSVLYERPDFRNI
FT                 AGAVPLLQFISNNNLHDTFYQISKLLKIVTTPMTTAEPERCFSS"
XX
SQ   Sequence 3083 BP; 912 A; 607 C; 691 G; 872 T; 1 other;
     cagtggcggc tggtgataat gtgctaatgt gctgcagcac actgtaaata tattactaaa        60
     attatgccat ttctcttcga atgcaacgag aaatcgctgt aaattacatc ctttctcttg       120
     gaatgcgagc cagatatcac aataaaatta tgccaattcc cttccaatgc gtattagaat       180
     gctagtaata aggatgaaaa cgcattgcgc tctcgccgcg atagctggaa accagctccg       240
     tgtgctgaag tgggattcag ccgcgctggt acgtgcgcag agaggcggcg cagtcgtctg       300
     ttcgctagtg cgcatgcgca gacgtgacgt caggcctggc ggctcgtgtg ctgagaccga       360
     ctgcagcacc agatcaatat ttctctcgcg ctgcgtgtaa cggttgcgga agaatagtat       420
     atgacgaata ttgcggcata cagagtcaaa tagcgcgctg gctcaggcgt cttgcgcgtt       480
     gtctctcaaa cctacttgtg tgaggctcgt attcaaatac ctctgagtct aaatttttaa       540
     tttctgtaaa taaaattaat atttttaaac gttatattta ctacctgcag tgaatacatg       600
     cagttggcaa cgctgttata gattcccctg aaggtcttac tgtcaataca gtattaattg       660
     atatttaatt aaaggcaatc atacaaaggt tgacgtgttt agataaaact tcaatcacaa       720
     acaacatgta atgtttagcc aagcggtgaa actgcgcttt tcagccagca gtttcattgg       780
     tcgcttgtgt agaacgcaga tgactggtgg gatattgcta agctccttat ttccattgtc       840
     agtcacgctt tgtacgttcg ctgaagaagt gtttcgcggt gtatttcttc gtgaaagtgc       900
     gcgttacgta ctgtgcgagc aacatggcga attctgtcat gatctgctaa gaggccattt       960
     tccagtagac ctttggaaga gaaacaaagt gaaagagtta ggtagaccta ctccagtttt      1020
     aaatctcagt caaaaggcta taggaggtgg caagaaaagt gagtacacga ggaaatttag      1080
     tacgaaagtg tatgaaaaca gtggtttgcg gatgtgaaca aatgcacttt tttgctttcc      1140
     atgtttgttg tttgggaaca tgatggtgag cacaggggga gtgaaagacc tcggacattt      1200
     taatgcatta ataaaaaaac aaaggaaatc ataaacatat aaataacata cttgatctta      1260
     gtgctaggta aagctaatat cgcaacaatt ttaagcgtgc ttatcgtgac gaaatagtga      1320
     aacataatca gcaggttgag aaaaacaggt atgtgctatc taggattatc gactgtataa      1380
     aattctgtgg ggaattcgaa cttgcttgag ggggcacgac gagacggaag ctcgaaatcc      1440
     aggtgtcttt tgggtttggt agactcaatt tctgatattg ataatgcagt aaaagaacat      1500
     gtacaaggta atcggttttt agggttttca aaaccattca aaatgagctg ctcgactcta      1560
     tgttagaaat tgccatgaat tatttcggaa gaaatgaagc aggctgagtt tgctgctgta      1620
     atggcagatg aaacaactga tgttttcgaa aagacacagt tagtattgtg attcgatatg      1680
     aaaagaatgg gggccatatg aaaggttctg gattttttca tcccgaagga cacamtgctg      1740
     atgctctagt acttgtattt tgaatgtcat agagcctttc ttcaaagatg caccgcataa      1800
     aattatagct cagacatacg acggtgcttc tgtcatgagt ggctgcaaag gcggtgtgca      1860
     ggcaagaatt aaagcagtgt atcctaatgc acattttgtg cactgttatg cgcaccagct      1920
     aaatttaatt gtggaacacg ctgcttcaca gaatcagtca gctagagtgt tctttttaaa      1980
     tgtatcaggc ttctcagcct tcttctcaag gtcatcagaa cgactttccg ccttagagaa      2040
     attggcagca agaaggattc ctagtgggcc agctactagg tggaatttca aatcacgcac      2100
     cgtaaatgtg gtccatgaaa ataaatcctt gctgctggaa tgcttatcaa tgctggaaaa      2160
     atcgccttcc gaccaaactt gttgccaagc agttggactc cgtcgaatct acaggatgaa      2220
     gaattcctct tttggctatc attcttccac aaagtgatgc ctcattgaga tattcatgta      2280
     cagccagttg caggcaagat cggtcgatgc tgtaataata aaaggttcag tatcccgctt      2340
     catacaggcc attaataata taagagcttc aatcgacgac attgatgcgg cagccacagc      2400
     agcagctacc tctcagagca agcgccggaa gataagtctt tgtcgacatt ctgatgcacg      2460
     agaagtctgc gacaggatta ccacagaggc cgtgatcgtt tccaagccct agatcatcta      2520
     gatgcagcaa agctgctaga ctcttcaaag tttgaagaat actcaagacg cttcccaggc      2580
     agagaactta atgttgcggt ccaagcttat accatgttgg agaaacccag gttaatgacg      2640
     gagctctcgg tattgtacga acgaccagac ttcagaaata ttgcaggagc tgtaccatta      2700
     ctacagttca tttctaacaa caatctgcat gacaccttct atcagatatc aaaacttctg      2760
     aaaatagtaa ccacaccgat gacaactgct gagcctgaaa gatgtttttc ttcctgaaga      2820
     ggatcaagac ttttcttcgg aataccatgt cagaacaacg acttaatgcc cttgcaatgc      2880
     tctccattga gaagaatatg gtaagcaaca ttgagggctt caacacgaaa gttatcgaca      2940
     aattctgcag cagaaaacaa cgacgtatgg acttcatttt tcgacactga gtgagtacta      3000
     ctttttattt tagtatattt tgtttcctgt ttatttttgt aatattgtag cacactggtc      3060
     aaattttgta cgagccgcca ctg                                              3083
//
ID   hAT-2N1_DF  repbase;    DNA;    INV; 745 BP.
XX
AC   .
XX
DT   06-JUN-2012 (Rel. 17.07, Created)
DT   06-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-2_DF; hAT-2N1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-745
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1189-1189 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 745 BP; 257 A; 138 C; 128 G; 222 T; 0 other;
     cagagaactg caaaaatcac tattttcttg atttaatcat acgcgaactt tttcaatcaa        60
     ctcaactcac tgaacaaaac acagcgatga gtaaaaatca actcattttg ccgttcacat       120
     cattccgatc atcttgagtc ttcggttcaa aatttctcac tcaattcaac tcactgaata       180
     aaaaacagtg atgagtgaaa atcaactcat tttgccgtac gcatcattcc aatcaaaaaa       240
     atgagcatgt ttgacgaaag catcattcgg atcaattcga gttgatcgtg tatgagtaaa       300
     cgattagcga caagatgaca cgaagtgagc attacgaatg cataattaag tttaatataa       360
     atttgaaatc aaaatgcgac gaaccaatga atatgttcct tatttgtttt aaaataaaat       420
     taaaacatga aaataaacgc tttgttgtga aatcattttc attgtgttgt gtttcacctt       480
     cttcttcgca catttcatct gtgcaaaaaa agttccgttt tctgcgcgca tgagtaaaat       540
     catacgagtt gatttttgtg agttgagtgc tattcttgtt caaaaaaatg attgttgaac       600
     cgaatgagta gcgcccgaaa tcattatgct gaacacgagc cgaacgattt ggagtgaaac       660
     aaaaaatcgc tcgcacccga gttgatttaa aatctacaac gaaaatgtga gcgcatgcaa       720
     gtttgatcgg ctgatccgaa cagtg                                             745
//
ID   hAT-2N1_RPr repbase;    DNA;    INV; 1265 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-2N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1265
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3335-3335 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1265 BP; 437 A; 201 C; 198 G; 427 T; 2 other;
     caggggtggc caacacgtcg accgcggtcg accggtcgac cgcaaaggtt tttaaagtag        60
     cccgcgaagc taaagttgaa caacttgctt tcacttaaat taatgtttga aaaccttaat       120
     tcgataattt attcttacaa taataggctg tctgtgcaat gtacccataa tgtttgtatt       180
     tatcccgatg aacaatgcaa atgaatttta acgagatttg gagaacttct gccacaaata       240
     tgctcatatt tacgaactaa aggtgattca tatccacaat taaatgatga agaatgactt       300
     cttgatcttg cttttttctg cgatgttact gaaaaattac accaattaaa tctgcaacta       360
     cagggtaaag gtgaaacagt aacagatatg ataagcattt tgaaatcatt taaagtgaaa       420
     cttaatatgc ttgcaatgca attaaaacgt cgtgatttaa agcattatca aaatctggct       480
     gatgagtcta aaaataaaaa gaatcttact tataacaaat atgccgatat tattgcactg       540
     cttctaaaag aatttgaaag aagttctaac attaagtgaa cttgaagata ttgccttttt       600
     tttgtcttgc ccatttaatg acaacatcga tgttgaaagt gtagctcaga aactaaacaa       660
     ctttactcgg tactacaaat ttagcaggct ttgagaagaa ataataaata ttaaatggga       720
     catatgtaga tcttaagtca ctggtttcag attgtaattt ttggaaactg tttaaataaa       780
     gataaatatc caaatattcg gacaattgtt gcmcgtttta atgccttctt tggatcaaca       840
     tatttwtgtg aatccgcatt ttcatttatg aatgcgatca aaacaaaaca tcgatcgcaa       900
     ttaacaaatc aacatttgga atcatgtttg agaattgcct taagttcata tgagccaaat       960
     tttgaaaaac ttgctgctct tacgcagtgt caggtatcgt ccaattaaac attgttattc      1020
     gtttgcttat ttacaatgta cctacttttt ttttcaagtt agtaagtatt tcatctcaaa      1080
     aaaaaaaaaa attatttgtt ttctttattt gtcatatttt tttaattgaa attcttgtta      1140
     attactcgta tttagtaaaa tatcaatgaa aaattctaaa atagtttgcc catatttaaa      1200
     gtcgcccgca gactaaattt ttcagaataa gtagccccta agggataaaa gtttggccac      1260
     acctg                                                                  1265
//
ID   hAT-2N_AG   repbase;    DNA;    INV; 1104 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 2)
XX
DE   This is a family of nonautonomous hAT DNA transposons - a
DE   consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; hAT superfamily; TIR; 8-bp TSDs;
KW   hAT-2_AG; hAT-2N_AG.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1104
RA   Kapitonov V.V. and Jurka J.;
RT   "hAT-2N_AG, a family of nonautonomous DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 5(2), 45-45 (2005).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1104 BP; 323 A; 279 C; 236 G; 265 T; 1 other;
     taggcatggg acaattgtgc gagacctatg ccgcacactc agttcattat agtgtgcggt        60
     tgatcgccgc acgcgaaaaa gtgaacgggt aggtcttccg cacgcataca gaactaactg       120
     aaatgtgctc tgaacaagat gcaagataac tgtcggtgtc atagactgaa cgaaaaaaaa       180
     acattcgttt tgggtcggca gaatttgtca cacacaacga cacaagaaga tcgatcgcac       240
     tttgcgcgag aaagaatgca catattgcta gcgtggtcag attgatcaat cgcacacagc       300
     cgcacaaaaa gaactcctgc cgcacactga cccctgagtg aatactgagt gagaaagaac       360
     actcatagcc gatgggtcat tcgcacacag ccgcacgcat gttcggttgg gtcagtcgca       420
     cacataccgc acgcgtgttc agttgggtca gtcgcacact accgcacaaa aagaactctt       480
     gtcgcacact gccgcacgcg cgttctgtta gttcggtcgc tcactgctgc acgcgtattc       540
     agtggggtca gtcgcacact accgcacaaa aagaactctt gtcgcacact gccgcacgcg       600
     cgttcagtta gttcagtcgc acactgccgc actcgtattc agtggggtca gtcgcacact       660
     accgcacaaa aagaactctt gtcgcacact gccgcacgcg cgttcagtta gttcagtcgc       720
     acaaaaagaa ctcgttaagc gcacagcaac ataaaagaga aagcttgtag attttactcg       780
     tttagatcag ctttcgttac aaatcaactt aagtatatac agtctgttct cgagctacgt       840
     tttctaagtt cttgtgtgcc ctagttacct agttatgcat gaaccgcgta tctcggactg       900
     actgtattta taattaaaaa tgcagcatta aaagcaataa ctttctgttc ttgcattaaa       960
     atctcgataa aatkaaacat gatattttta aaaatggtac ttagctccaa ttgagcgact      1020
     gacctaccgc acgcgttcag ttcatcatac tgaacgaact acatcgcacg cgttcactga      1080
     aaagaatcaa attgcccaag ccta                                             1104
//
ID   hAT-2_AG    repbase;    DNA;    INV; 4803 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   hAT-2_AG is a hAT-like autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   Autonomous DNA transposon; hAT superfamily; hAT-2N_AG; hAT-2_AG;
KW   transposase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4803
RA   Kapitonov V.V. and Jurka J.;
RT   "hAT-2_AG: a family of autonomous hAT DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 5(2), 46-46 (2005).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4803 BP; 1617 A; 890 C; 830 G; 1466 T; 0 other;
     taggcatggg ctaattgtgc gagacctatg ccgcacactc agttcactca agtgtgcggc        60
     tgaccaccgc acgcgaaaaa gtgtacgggt aggtcttccg cacgcataag gaatgacttc       120
     ggttgtgact ggttgaacga aaaaaaaaac attaatttta gtcgactgtg ttcaacagtc       180
     aaataaaaaa tcgatcacac tctgagcgag aaagaatacg caaattgtta gcgtatttag       240
     ttgggtcagt cgcactaaaa gaactcctgt ccaagactga catggaacga gaaatacact       300
     catacccgtt gggtcagtcg cacactgccg cacgcgtgtt cagtttggtc agtcgcacac       360
     acagctgcac aaaaagaaat tctgtcgcac actgccgcac gtttgctcag ttcgttcatt       420
     cgcacacagc cgcacaaaaa gaacttctgg cgcacactgc cgcacgcgtg ttcagttggg       480
     tcagtcgcac acagccgcac aaaaagaact tctgccgcac actgccgcac gtttgctcaa       540
     ttcgttcatt cgcacacagc cgcacaaaaa gaacttctgc cgcacgctgc cgcacgtgag       600
     gtcagttggg tcagtcgcac acagccgcac aaaaagaact tctgccgcac actgccgcac       660
     gtttgctcaa ttcgttcatt cgcacacagc cgcacaaaaa gaacttctgc cgcacgctgc       720
     cgcacgtgag gtcagttggg tcagtcgcac acagccgcac aaaaataact cacactgact       780
     acgctagtaa tatgctcgtt ctctctgcgc tgtcggatca gtcgcacaca gtcatacaaa       840
     gaactgctac cgcacactgt cctgatgaaa cacagggttt gatgtctttt tggttgtttc       900
     ttcatttttt ggatttatct cacattttat tgcatgcttc ccaaattatt ttggactcat       960
     tccacaattt attatatgtt tctcatataa ttttgtattc gttttgtgat ttattcttac      1020
     catcccagtt gttttgaaac aaataattga acaaatttta tgaaacgtta aataatcgtg      1080
     atccataaac cctgtaatag gagacaaaat tggtatcaat agcatcttct tccttctcat      1140
     tttctgctga ttgtttttta cgtagcacca gacattctta gcgtggggaa ctgtgtggta      1200
     ttgatatgta tcgaatgtaa gagcaaggag ggaaaaacgt acactaggta ttcgctagtt      1260
     gaatgatttg aaatgtggat cattttttta agttgcatgg tcgatgtgag atttataaat      1320
     cgatgatttt taatcttgaa atattcacca catgcaaaat caaaaaatct ccaaatcttt      1380
     atattctttt gctttttatc atttaaaaaa atatgccaat tcaaaatgca atacatgtca      1440
     cacattacaa tttcaattag cgagctcaaa ctgtaccatc ccacgatgtt ttattcgaac      1500
     accattacta gtgaggcatg cttttcgcac actaagttga tgagtgcaat atgtatataa      1560
     aagaacgtca agtattcgga aagtggctta cccattatga atgagtccct cgtttgttgg      1620
     tgttgtatga ataatattgc agtaggtaac aaagtgaaat agtattgaag tgcgtttccg      1680
     gtatcagagt tttagctttg cattgtcgtt gcgattccta ttttggttgt gtatcgaatc      1740
     agtcgcatta aaggaaagta cccagtttga aaattcataa cgcgtaaata ctttttctgt      1800
     ggaagaatcg gcagggataa cctgataact aattaaaggt aagttgcttt attattttta      1860
     acttttaaca agatgagaaa aaatgacaaa tcgtcattta ttcttttttt tatttcataa      1920
     aaaaaatcct agttcagtgg tcgagaaagt acggcaatcc gtttacgatt tttgccagca      1980
     ttttcactcc ttaacagccc cttgctattg taggagtatt caaaatctcc cacagtttca      2040
     cgccttcatc tgaaaatccg gtttggaaat ttactgacat ttgtatagaa tttagctgtc      2100
     tatggcgtca agttaaccga cgtttttttt ctagttcagt ggtcagcaaa ctttgtggtg      2160
     aaaagagcca aattctatga aaatgttggt agatttcgat atgaagagcc aaatttgaaa      2220
     accaagcata caattgagtt aaccactgtc ctcatttgga ccttccttcc acaaatgaca      2280
     ttcaaagcca aaactattca atgttttggt cacaccagtg acaactatga tcgactgact      2340
     tttcatgatg actgagtaac ttttaatcga agtaatagat ttaatcatta tagtaaaatt      2400
     tacatcatca attaaaaata atgatctaca atttatcaat aattaaagtt tcctcaaaat      2460
     accaaagcac agtgatagta ttacgtttat tttatttgaa taatattgct ataattataa      2520
     tttacaacaa ttgctgacgg gactggaact ataccaaaac gttctttaat taaaaaaaaa      2580
     ctgttcgttt tagcagtcat actgttaaag ccatttaggc tgttagataa ttgaacaaat      2640
     atttaaaatt ttatttttga ttaatgttgt aatatgtttt agttaagatg gcttctaatg      2700
     tcgctacgtc cagctcgatt tgggatcatt ttacaaggaa cggaacaaaa gcgaaatgtc      2760
     gttactgcta caacgaaata gcatttacga aaggatctac ctccaaccta aagcgtcata      2820
     tgaaagcaaa acatccatca atatcacttg aaaggcaaca tctcgcatca actacatcac      2880
     catcaacaca aaatagtgaa ccaggtccat cgtgcagttc gcgccctcct aatttaattt      2940
     caaatttttt caaacaaccc atgaatagtg aaacaaaacg taaattagat atgatgcttt      3000
     taaaattaat ttgcaaagat tgcctcccat tgtcaatagt agagagcgaa gcattcaaaa      3060
     catttgttgg ttgtttgaat caaaattatg atttgcctac ccgtaagaat gtatcaaatg      3120
     ctctattacc cagtatttac aacgaaatat tggttaaagt gcaaggagaa gtgagaaatg      3180
     caacttctat agcattgact actgacggtt ggacaaatgt aaataataca agttttttag      3240
     gtttaactgc acattttata gataatgatt acaaactacg ttcgtgcctt ttagaatgtt      3300
     ccgagatatc actatcacat agtggccaaa atatagcggc ttggatcaag gaagttataa      3360
     ttaaatacga aattcaggac aaaatagttg gtattgtaac cgataatgcg gccaacatga      3420
     aaagcgcggc tagagaatta gaatttaatc acgttacatg ttttgcccat agtttacatt      3480
     taattgttaa agatgccatt aaaaaatcaa tcatatctac cgttgatgaa gttaaaagga      3540
     tagttatgta ttttaagaag agtccaaaag ccactaatga attagctgat acccagtcaa      3600
     aatttaattt accaaattta aaattaaagc aggatgttcc aacgcgatgg aattcaactt      3660
     atgatatgct aaacaggttt tataagaata aaatagctat tgttgcttgt gcagacaaat      3720
     taaacacctt ggatcctatt aaaatagact gggcaatttt agaacattca ttgaacgctt      3780
     taaaaatatt cgatgttgct actaacatgg tttcagcaga aaaaaatatt actgtttctc      3840
     acgtaggcct actaagtaag atgataatac gcaaattaaa cgaaactgat tatactattc      3900
     cggaattagg caatctcgtg acacatctta aagaaggcgt aaaaaaacgt ttggaaattt      3960
     attccaataa tcaaatcata gcaaaatcta tgttattgga tcctaggata aaaaagcaag      4020
     gtttccatga agaaccctta aaatatcggg aaacatacga acttattata caagagttga      4080
     ttccgtttca aactccctca atgaatgcac aagaaccaca caatatagac aatgaggcaa      4140
     acttgttact tggtgagttt ataacatggg ttaataacgc agaatgcgag attgaaagcc      4200
     ctatagaatt agcaaaaaat gagctaaata gctttcttaa aataagaaac atagacatca      4260
     aaaatgatcc tttggaatgg tggagaattc atagttcaaa atatccgtca atttatgcac      4320
     tcgccaaaac aattatttgt attccgggaa catctgtacc atgtgaaaga ttattttcaa      4380
     aagctggaca gatttattca gataagcgtt ctagattaca tcctaaaaaa tttaaagaaa      4440
     ttatttttat tcagcaaaat gtagataaat tttaaaaaat tatttagttt ttggattgaa      4500
     tttaggtaag cctaagaatg aaataaattg ttagtgtgta tgatatattt tttataactt      4560
     ttctcttaaa ctaaaaattt ataaattaga attgtaacac catggactaa acatctcaac      4620
     aaatacataa aagtaaagtt ttgttcgagc atccgcatta tttatttaaa ataaaagaca      4680
     gttcaaaatt taattctttg tgtgaccgac agtgcgactg acctaccgca cgcgttcagt      4740
     tcctcatact gaacgaacta caccgcacgc gttcactgaa aagaatcaaa ttgcccaagc      4800
     cta                                                                    4803
//
ID   hAT-2_AP    repbase;    DNA;    INV; 3473 BP.
XX
AC   Contig35933;
XX
DT   25-JUN-2009 (Rel. 14.07, Created)
DT   25-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_AP.
XX
NM   hAT-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3473
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1364-1364 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 3473 BP; 1283 A; 530 C; 550 G; 1110 T; 0 other;
     ggtacttttc ggttatcgta ctccaacggt cggccggcag gtggcggccg cggtcgggat        60
     ataccgattc cgttatcgta caccattaaa tttatctcaa tattgtcacg tttcattgcc       120
     aaaaatataa tttattttaa tagaataata taataatatg aaaaataata attttaaaat       180
     aaaataataa taaaaaaaaa ttataataaa atatgaacac caaaaaaatt attgtaaata       240
     caaattatta aataatatta tgaaggaggc atgaatttaa caatgtcgtt tataatttga       300
     gtaaatatgc agatggtttt tttatgtttt tgttgcataa atcataataa taataataat       360
     gattaattta aaaaaaatta ttataatata agtaatacaa ttaatataaa gaataacaat       420
     ttatttaata taaacaaata ttttcttaat atatttaagt aataactcaa acacattgaa       480
     taaaaatagt atttaagtac cactttagat acttttataa aatattttac ctaaaaaaat       540
     gaacacaacc aaccttttaa cagttacaag tacagttaaa attttaaatt atgaataatt       600
     aatatcaaat aggtaaataa taatacttct aaattatagg taaatgaatc aaattctgag       660
     attattgatg atccagaacc ctcaacatct atggaccaaa atccgattag acaacaatct       720
     acttcagtag caacaacatc aacagcattt ttaagaccac ataacaaaca gcaaagctct       780
     attgcaaact tcatccataa gccgatacct atgagcaaat caaaaatgat cgatcaacag       840
     ttaatcaaaa tgattgtgaa ggaataccat ccgtttagtg tggtggagga tgaagaattt       900
     cgtaaattta ttaaaatgtt atgtccaact tacattattc catcaagaaa aaccgtaacc       960
     caaagtttgt tacctcagat gtttgatatg actcttgaat gcgtgaagga tagattaaaa      1020
     aatgtggaag ctgtgtgttt gaccacagat gggtggactt ccaggaccaa ccaaagtttt      1080
     atatccgtaa cagcacattt tattgaccct aaaaacgata cagttgtttc atctgtatta      1140
     ttaggctgta tcgagtttaa ttaaaaacat acaagtgaaa atttgtctcg ttttttaagg      1200
     aacctagttg aggaacggaa tttattatat aaacttactg ctgtagtaac tgataatgct      1260
     gctaatatta aatcagcaat tagaaactgt aactggagaa ggctatcttg ctttgcacat      1320
     tctataaatt taattgtcca atctagcttg aaatgtatag attctactct gtcaaaggta      1380
     aaaaacatag tacagtattt taaaaaaagt tcgcacgccc tggcaaaatt aaatgactat      1440
     caaaaacaac ttggttcacc tattttaaaa cttaaacagg attgcccaac gcgatggaat      1500
     tcgacaaacg acatgatcaa tagaataatt gcaattaaag attcgattat tgccactctt      1560
     gcagttttag gtaattcaga gttgaactgt ctaagcccac aagactgggt tatattggaa      1620
     aatgcccggg acattttgaa aatcttttat gaagtgactg tcgaaataag tgccgaaaaa      1680
     tatgtaacta tatcaaaaga aatcattttt attaaaacat taaataagtt tgtttttaat      1740
     tttaataata acaatacatt accaaaagaa attaattcca tgtgtcaggt tttgaaggat      1800
     gagttgtatg caagatttgg taaatatgaa gagaacccgt taattagcaa gcaacattat      1860
     tggatccgag gttcaagaaa tttgcacatt ctccaatgaa aatcattgta agaatgcagt      1920
     taatttgtta aaggctaaag cacaaagtat tatattagaa tcagacgaac caatacatca      1980
     acaagttgct acatctacct ctgctagtaa ttcaagttca atgctgtgga aagagtttga      2040
     tgaaactgtt gtaaatttga ttggaggatc caactcgtca gtggcaggta taattgaagt      2100
     tgaaaagtat ttgaatgaac cattgatcaa ccgtgcagaa aatcctttgg tttggtgggc      2160
     tgagcgaaaa aatgtgtacc cacgattgta cagattaact aaaaggagac tgtgtattat      2220
     ggcaacatca gtaccatgtg agagaatatt ttcaaaagca ggacaagttg taaatgaaag      2280
     aagatctcga ctcaccacat caaaaatatc acaaatatta tttcttaacc acaacatgtt      2340
     gtgatttata taattatatt tattgtatac taatagttat tagttgatag ttatattatt      2400
     ataatactta ttattattat tttattattt tcattaaaac aatgtaaaga ggagcaaaac      2460
     aaaaatgtgt aaatattaaa taataaatat atcattattt attataacct tgttatcaaa      2520
     aacaaaaact cgcgtctcgt tcagtctcgt tcaatcaacg gttcacacgg ttcgcgtgag      2580
     tatatgattc gggaatcggg gagatagtga cagtgtgaac caagaaccaa tacgaaaaaa      2640
     aaaatcaggt gatccggatc acctcggttc ggcgatctgg atcatatcgt tcactacttt      2700
     gacccgttcg ataagatccg ttcgttcgcg aacgacacat ctctactcag ttccttgatc      2760
     gactatggct cgtttcaact acgatatgtt atgttcggtg tgcaatgacg aagaaagtgc      2820
     tatacgtttt ttacaagacc acggagtgct tcatcgtaat cgtacttgta aaaacggtca      2880
     tgatatgttg atacggtacg ggtctaaacc tctgtggcga tgctgccggc tctattataa      2940
     tatcagattg ctggaagagc tacgattctt taaagcataa taatgcattt cagcatatgc      3000
     aggtcaatca caaatataat tttgtagacc cagataccgg ggcacacaca caaaatattg      3060
     agcgtttatg gcgatcggct aaagaacgaa ataaaaaaca ttcgggaacc catcggtcaa      3120
     tgttggattc tcacataagt gaatttctta aaaaaaacca tctgcatatt tacccaaatt      3180
     ataaacgaca ttgttaaatt catgcctcct tcataatatt atttaataat ttgtatttac      3240
     aataattttt ttggtgttca tattttatta taattttttt ttattattat tttattttaa      3300
     aattattatt tttcatatta ttatattatt ctattaaaat aaattatatt tttggcaatg      3360
     aaacatgata atattgagat aaatttaatg gtgtacgata acggaatcgg tatatcccga      3420
     ccgcggccgc cacctgccgg ccgaccgttg gagtacgata accgaaaagt acc             3473
//
ID   hAT-2_DAzt  repbase;    DNA;    INV; 2924 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila azteca genome - consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2924
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 588-588 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 8-bp TSDs. 6-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           882..2030
FT                 /product="hAT-2_DAzt_1p"
FT                 /translation="MLPDATTLSRTTHKIADDKKHEIQDELADIVQNGGAT
FT                 ATIDLWSDNYVHRNFLGVTLHFQKEKQLHDIILGLKSMDFQRSMSANILSK
FT                 LHTLFGEFGIHNLEKIKFVTDRGTNIIKALEGNDRLNCSSHLLANVLEHAF
FT                 NDSLEVAELVEACKKIVRYFKKANLQHQLQTSLKNYCPTRWNSNFAMFKSI
FT                 VDNWFTINEILKEKQETQRLLLINISTLQQLVDLSSAFEVIFKKLQLCSSP
FT                 SLCYVVPSINKMRLLCEPQATDVFPILALKEKIINNVEEIWAQNINIWHKA
FT                 AFFLFPPALNMQSIDHDEIKQFCMSKMNSFDINPSGSSSVLASPSTPNSDI
FT                 VSQFSFEDCGSVDSPNSTNTPLSKEKDVQFFSPNFLKRPH"
XX
SQ   Sequence 2924 BP; 959 A; 525 C; 528 G; 912 T; 0 other;
     cagagatctg caaaattcac ttttttcgtg atttactcat acgcccaaat tcttactcaa        60
     ctccactcac tgaacgaaag tcggcgttga atgaaaatca gctcatgctg atgagcatat       120
     gaattttgtg tatgtacacg aactgagggt tgatttaaat tcactctctt gcgctcatat       180
     tttttctctc tctgagttta ttcatgctca tcagcaaacc gatcatttgg gcgtatgttc       240
     attcggctca gcaatgattt tttttcttga tttactcata cgcccaaatt cttactcagc       300
     tccgctcact gagcggtgaa taaaaatcag ctcatgccac tcattgactc aactcgttta       360
     gatgcattac cgttatgatt ttgtttttgt ttttactgtt tctttttgtt tttgagaatg       420
     cttggggttg ttggttgaaa tgagcacaat tagtgtaatt ttgtcatctc gttgctatgg       480
     agcaggttat cttagaaaaa atacgcttaa atacctatac attggcgccc cgacataagg       540
     gaagaagctt tgtgtggaac attttagcag agattttgaa ggaggatggc actgttttag       600
     atggatttgt gtactgtcga tcgtgcagta atatattgaa atatttggca agatagtcgt       660
     ccaatttaat tcgacataaa tgctgcaagt cgttaaagga aagaaaactc ttaaaaactg       720
     taacgccgga ggaaaaaaaa gcagctatag atgtttgtgt agcctgggtt actgaagatt       780
     gccaaccctt ttcagcaatc aatggacttg gcttaaaaaa acttgcaaga tttttaattc       840
     atattggatc aatttatgga gaagatgtag atattgatga catgctgcct gatgcaacaa       900
     cgttgtcgcg aacaacgcac aagatcgcgg acgacaaaaa acatgaaata caagatgaat       960
     tagccgacat tgtgcagaat ggtggtgcaa ctgcaactat tgatttatgg tctgacaact      1020
     acgtccatag aaacttttta ggagtgactt tacacttcca aaaagaaaaa caacttcacg      1080
     atataatttt gggcctcaaa tccatggatt tccaacgctc aatgtctgca aacattttga      1140
     gcaaattaca tacactgttt ggcgagttcg gcatccataa tttggagaag ataaagtttg      1200
     taactgacag aggtaccaac attataaaag ccttggaagg aaacgaccga ctaaactgca      1260
     gcagtcattt gctagcaaac gtattggaac atgcttttaa tgattcgttg gaggtagccg      1320
     aacttgtaga agcatgcaaa aaaattgttc gctattttaa aaaagcaaac ttgcaacatc      1380
     aactgcaaac ttccttgaaa aactattgcc caacacgatg gaactcaaac ttcgcaatgt      1440
     ttaagtccat tgtagacaat tggtttacta ttaacgaaat tctaaaagag aagcaagaaa      1500
     cccaaagact gttgcttata aatatatcaa cgcttcaaca gttagttgat ttaagcagtg      1560
     cttttgaagt catatttaaa aagctacaac tttgcagttc tccatcacta tgctacgtcg      1620
     tgccatcaat taacaaaatg cgacttctat gtgagccaca agcgacagac gtatttccta      1680
     tattggcctt aaaggaaaaa ataattaata atgttgagga aatttgggcc caaaatatca      1740
     atatatggca taaagcagca ttttttttat ttccgcctgc tttgaacatg caatcaattg      1800
     atcatgacga gatcaagcaa ttttgcatgt caaaaatgaa ctccttcgat ataaatccat      1860
     cagggtcatc ttctgttcta gcaagtccaa gcacgccaaa ttcagatatc gtgtcccaat      1920
     tttcatttga agactgtgga tcagtggact cgcctaattc aacaaacacc ccactaagta      1980
     aggaaaaaga cgttcaattt ttttccccca actttttaaa gcgcccgcat taaatacgtt      2040
     taaaacagct acagatgaat tggaaagcta ctgtaatgaa attgtggaaa taaataatga      2100
     ctttaatgtg ctagaatggt ggaaaagtaa tgaaaaaaaa tatccagcac tatccagttt      2160
     tgctttgaaa gttcattcga ttccggctag tagtgcagct gcagaacgcg cattttcttt      2220
     ggcaggaaac attataactg acaaaagaaa tcgtcttggt ccaaaatctg tggacagctt      2280
     aatttttttt aaatcttact ttaaaacata taataataat aacaatgtac aacagaaata      2340
     agtatatatt aagtattaat tagcattcac ttataaagtc aaaatgtgtt ccttttttat      2400
     gttaaacata tttatgtaca cttatggata tatatatgca catatgtaag tgtgaaatta      2460
     ttttcttatt ttatgttatt aatcaaaata attgccaatc aaaatgaaat tatataatct      2520
     gttgtgaaat aaattttgat ttctttgact tcgcccatga acaaactcat acgccttaat      2580
     ttactgcctt ttgaattttt ctttactcaa ctcaatcatt gctgagccga atgagctgat      2640
     ttttattcac cgctcagtga gcggagctga gtaagaattt gggcgtatga gtaaatcaaa      2700
     aaaaaaaatc attgctgagc cgaatgaaca tacgcccaaa tgatcggttt gctgatgagc      2760
     atgaataaac tcagagagag aaaaaatatg agcgcaagag agtgaattta aatcaacccc      2820
     gagttcgtgt acatacgaat gtttgatcgg ttgagccgaa cgacacgatt attcggctat      2880
     ttttgtgtat gatttttttt ccaatcacgc caagccgttc tctg                       2924
//
ID   hAT-2_DBp   repbase;    DNA;    INV; 2480 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.05, Created)
DT   26-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2480
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 607-607 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           310..1977
FT                 /product="hAT-2_DBp_1p"
FT                 /translation="ILHETIGGNKDVEQEVKHGVEQDVEIVGNVQGAKSLK
FT                 KVNRLGSSVWDIFEKTKDGKTAKCRICKKVYKTSGNTSNLADHLRRFHPTQ
FT                 HQHKLAQATVKKFFNNNEYDSKSVRKANLDTALMQMIAKDIQPFSIVDDEG
FT                 FRNFVKVLDPRYTLPSRTTLQNVHMQNIYAEMKVKLQTILVKVDQCAVTMD
FT                 CWTSKANTGYLTITVHFIDEKFQLRSAVLSTQPLLCATNHSAENIASSVRA
FT                 ELISWNLLPKVCAIVTDNASSMIKACELLEKRHLPCYAHCINLVVQDSLSL
FT                 NSIQTILTKCKRIVTFFKCSTIAYEKFKKAQGVDKPYSLIQEVRTRWNSAF
FT                 KMVERILLTKEHISPVLLSLSKAPEPLAADDVAVLEDLKDALAPFNEVTTQ
FT                 LSSSTKVTVSSVIPISNGLVQSLREIRENLKTKEGEELCALLIEKCKKRLF
FT                 PFEERSSTRLATXLDPRFKKEGFRSPFNAEQAVSLLEKTLSSLPHTNKEPI
FT                 LTTQPPEPPKPKSSLLNFVKQNIELKQRSSKVESIIQIRQYFEKMNIDENQ
FT                 DPLEYWKVS"
XX
SQ   Sequence 2480 BP; 817 A; 496 C; 521 G; 644 T; 2 other;
     tagagctgca aaaaaatcga tagtaccatc gataatatcg atggttggcc gccggtcacc        60
     gacttcgata tttttcagac tatcacgata gttttacgaa aaattcccat cacttggact       120
     tcgaaggaac aagaaggtac gcatattttg cgcacaaaaa aatttaatag ttttatacta       180
     attttctcta gttttcgaca gaaatattca gattttggtg gttccggtgt tgttgtggtt       240
     ccttaaaaat ggatggcggt gcaaaaagta agttgatggc aaagatatta agagattaaa       300
     ttcacataga ttcttcatga aactataggt ggtaacaagg atgtggagca ggaagtaaag       360
     catggtgtgg agcaggatgt ggaaatcgtg ggcaacgtgc aaggagcaaa gtcgctaaaa       420
     aaggtcaacc gacttggaag ttcggtgtgg gatatttttg agaagaccaa agatggaaag       480
     acagccaaat gccgcatttg taaaaaggtg tataaaacaa gtggaaacac cagcaacctt       540
     gctgatcacc tcaggagatt ccacccgacc caacatcaac ataagctagc acaagcgact       600
     gtcaaaaaat ttttcaacaa caatgagtac gacagcaagt cagtgcgaaa agcaaacctt       660
     gacacggcgt tgatgcagat gattgccaag gatatacaac cgttctctat tgtggatgac       720
     gaaggcttta gaaacttcgt gaaagtgttg gatccgcgct atactttgcc gtcacgcacg       780
     actttgcaaa acgtgcacat gcaaaacatt tacgcggaga tgaaagtaaa actgcagacc       840
     atccttgtca aagtcgatca gtgcgcagtt actatggact gctggactag caaggcaaat       900
     acaggatatt tgaccattac cgtgcacttt attgacgaaa agttccagct gagatcggca       960
     gtattgtcaa cgcagccact cctatgtgca acaaaccatt ctgctgaaaa catcgcatca      1020
     tcagtgcgcg cagaactcat tagctggaat ttgttgccaa aagtctgcgc aattgtaaca      1080
     gataatgcta gcagcatgat aaaggcttgt gagctgctgg aaaagagaca tctgccatgc      1140
     tacgcgcatt gcataaatct tgttgtacag gactcgcttt ctctaaactc cattcaaacg      1200
     attttgacta agtgcaagcg tattgtcaca ttttttaaat gcagcactat cgcatacgag      1260
     aagttcaaaa aagcgcaagg agtcgacaag ccgtacagct taatacaaga ggtacgtacc      1320
     cgctggaaca gcgcgtttaa aatggtagag cgcatactat tgaccaagga gcatatttcg      1380
     cctgtacttc taagtttgtc caaggcgccg gagcccctgg ctgcagacga tgttgcggtc      1440
     ttggaagatt tgaaagacgc gctggctcca ttcaatgaag taaccactca attatcttcg      1500
     agtacaaaag taacagtatc atccgttatt cccatatcga atggtcttgt gcagagttta      1560
     cgcgaaataa gagagaattt aaaaaccaaa gaaggcgagg aactgtgtgc acttttgatt      1620
     gaaaagtgta aaaaacgtct ttttcccttt gaagaaaggt cctccactag gttggccaca      1680
     nttttagacc ctcggtttaa aaaagagggt ttcaggtccc cctttaatgc ggagcaagcc      1740
     gtatctctgc tagaaaaaac actttcttct ctaccccata ccaacaagga acccatttta      1800
     accacccaac caccggaacc accaaaaccg aaatcttcgc tcctcaattt tgtaaagcaa      1860
     aacatagagc ttaaacagag gtctagcaaa gttgagtcga taattcaaat aaggcagtat      1920
     tttgaaaaaa tgaacattga tgaaaatcag gacccattgg agtactggaa ggtaagttaa      1980
     taaaagctaa aagtactatt ctttaaaatt tttataattg cagcaacatg aattagagat      2040
     gccccaactg gctataagcg ctaagcaggg gctctgcatt ccggcaacct cgacagaatc      2100
     ggaaaggatg ttttccaaag cgggcctaac aatctgtgac cgacgggcgt ccctaaagcc      2160
     aaaaaccgtc acaaactgtt atttgtcaac aaaaattggt ttttaaccaa agaaatgtga      2220
     tttaatttct ccttccaaat atgaantaaa aagatctcgt ttgaatttaa actaaatgcg      2280
     tttttaatta aaacaggggt attcatgtaa aaccaatata ataggggtat tccctaaaaa      2340
     aaattatttt aagtatgttg gttttacatg aataccccta atgtttatat atgagcgata      2400
     gtatcgcgat agtatcgagg tttagtccgc aaactatcaa aactatcgat ggggctacca      2460
     tcgatgtttt tgcagctcta                                                  2480
//
ID   hAT-2_DEl   repbase;    DNA;    INV; 1344 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1344
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4040-4040 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(339..809,754..1119)
FT                 /product="hAT-2_DEl_1p"
FT                 /translation="MSFIKYYSLNLPFLDVLKIYFYYFKLGVENTKMKRIK
FT                 PSGAQFKKIRAKKQHTENLSKEFMLHYVKSHNKETSDASNNPSGSGSNLEN
FT                 PTQHVIDECTSDIENNIKEYLDDDKEVLKRKLLEVNDKCKSLAEIYSNDLN
FT                 GTELFHDIKDVFSSEKGQMVRNCFTISKMYFLLKRANKKGESLDLTPKGIL
FT                 LYVSSLGLEAYKTLVTALNILLTLPLSVASCERSFSKLKLMKSYLRTTMNQ
FT                 DRLSNLAILSIENEVAASLDYNDIIAEFAAIKARKVIF"
XX
SQ   Sequence 1344 BP; 462 A; 243 C; 262 G; 376 T; 1 other;
     cagtggcgga tctagggggg ggcgaaaggg gcaagcgccc cgggcgccaa atctaagagg        60
     cgctaaatcg agtccgacta gccatatatg tttcgagaat tcatattttc ccggggcgct       120
     gcgcatgtaa cgctccctat agaatacaag tgtaagtgtt ttatgatgtg atcaaaagga       180
     aaagggacgc tcgaaacgtc ataataaact ttcttgctta gagagaggag agagagcgag       240
     cagtatacgt gttaggttat gagcgcgttt gtttacatac attccaatca aggcagtgtt       300
     tttctattgc aacatttaat cgaggtactt atgcttcgat gtcatttatc aaatattatt       360
     cactgaacct tccatttctt gatgttctaa aaatatattt ctactatttc aaattaggcg       420
     tggaaaacac aaaaatgaaa cgaataaaac caagtggtgc ccagttcaaa aaaatccggg       480
     caaaaaaaca acacaccgaa aatttgtcga aagaatttat gttacattac gtgaaaagtc       540
     ataacaagga aacctcagac gcctcaaata atccttcggg ttctggatca aacctggaaa       600
     atccaacaca gcatgttata gacgagtgta caagcgatat tgaaaataat atcaaagaat       660
     atcttgatga cgataaagaa gttttgaaaa gaaaactatt ggaagttaac gataaatgca       720
     aatcattagc tgaaatttat tctaatgatt taaatggtac ggaattgttt cacgatatca       780
     aagatgtatt ttcttctgaa aagggccaat aaaaagggag aaagtcttga tctcactcca       840
     aaaggaatac tattgtatgt ttcatcgttg gggttagagg cgtacaaaac acttgtgacg       900
     gcattgaaca ttttgctgac cctaccattg tccgtggctt cgtgtgagcg atcattcagt       960
     aaactgaaat tgatgaaatc ttatctccgc acaaccatga accaagacag gctgtcaaat      1020
     ttagctatac tatctatcga aaatgaagta gcagcatcac tcgactacaa tgatattatt      1080
     gctgaatttg cggcaatcaa ggccagaaaa gttatattct aaaagtaata tttttttgtc      1140
     ttgcaaaaac acaaataata atgttttttc cgttgtaact gacaaaagaa ccgatatgaa      1200
     atacaattct tcaaacatat aagcttttaa taattaataa cctatttaca cttaaaatac      1260
     tcctaatgtt attsgtacag caaataggga ggggcggaat ttttcgcttt gccccgggcg      1320
     ccagcaaccc tagatccgcc actg                                             1344
//
ID   hAT-2_DF    repbase;    DNA;    INV; 2820 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2820
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 804-804 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 11-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2820 BP; 903 A; 493 C; 542 G; 854 T; 28 other;
     cagagaactg caaaaatcac tatcttcttg atttaatcat acgcgaactt tttcaatcaa        60
     ctaactcact gaacaaaasa cagcgatgag taaaaatcaa ctcattttgc cgtwcacatc       120
     attccgatca tcttgagtct tcggctcaaa atttctcact caattcaact cactgaataa       180
     aaaacagtga tgagtgaaaa tcaactcatt ttgccgtacg catcattcca atcaaaaaaa       240
     tgagcatgtt tgacgaaagc atcattcgga tcaattcgag ttgatcgtgt atgagtaaac       300
     gattagcgac aagatgacac gaagtgagca ttacgaatgc atatgcacgt atagtaacaa       360
     tttctatgcg agcttcttga agcttgttgt tgcttgtttt tttgtcttcc tcctttttag       420
     tcaaattctt cgtttcgcta tgactcatat ttcatttttg taattcataa ttagttgcat       480
     tttgttattt gattgatatg gagggtatca ttgaaaaaat tcgcgcaaat gaataccaat       540
     tggctgcccg gcataagggt agaggcaata tttggagcwt attgacagaa attgttwagg       600
     aggatggcgt tgttctggat ggttttttat attgccgatc ttgtcatgat cttgtgaaat       660
     actcaccgaa gcaaacatca aatttaagcc gacacaaatg ctgcaagttg cttaaagagt       720
     saaatttgtt gactgcagcg aaaccagaak acaagaaacg catgtgtgga atgggtgacw       780
     caggattgcc aacccttttc agcaatcaat gscaatggat twaggagcat ggcaaagttt       840
     ctagtcaata ttggtggaag gtataaggak ggagttgatm ttgatgacct gctgccagat       900
     gcaacaacgg tgtctcgagc tacgcaaaag ttggcggatg agaaaaaaaa attattaaag       960
     atgaggtagc cgaagttkct agtagtggtg gagcamctcc acagttgact tgtggwcgga      1020
     magttacgtt catcgsagct ttcttggtgt caccttgcac ttcmaaaaga ttttaaattg      1080
     gtagatctca tcttaggtgt taagtcaatg gacttcgagc gtccgactag cacaaatgtt      1140
     ttaaacaagt tgaacacttt gtttgctgaa ttcggcataa ataakttgga ccaaatgaag      1200
     ttcgtcaccg atcgaggcac aaatatcgtc aaggctttgc agaataatat taggttaaac      1260
     tgcagcagcc atttgcttgc aagcgttttg gagaatgcgt ttaaggaatc taaagaagtt      1320
     gctgaatcgg tagaaatgtg caaaaaaaat tgtcaaawat tttaagaaag ctaatttaca      1380
     gcatcatcta caaacatctc taaaaaakca atgcccaaca asatggaatt cgaatttcac      1440
     aatgtttaag tctattgtgg acaattggtt caacataaat gawattctaa tagagaaacw      1500
     aggaagtcaa cgattgttgc ttataaacat atcaacgcta aaacaattgg twgacttatk      1560
     twgcgatttc gagataattt ttaagaagct tcaattctgc agttmtccat ccctgtgctt      1620
     tgtgataccg tcaattgaaa aatgcggcat atttgcgcgc cacaagagga agatgtaccg      1680
     gcactggtta cattaaaaga aaagatttgt aataatgttg ataaaatttg gattccaaat      1740
     atttgtgtgt ggcataaagc tgcttgtttt ttgtttccac ctgcgttaca aatgcagcct      1800
     aacgacaaag acgcaataca aaaattttgc atttcacaaa ttaggtactt ggacgttcca      1860
     tcaactagtt ctgctcaaaa cagcccaagc acaccaaacg gcgatttttc agaattttca      1920
     tttgaaagct caactttttc aacaagtaca caagcagaca aggatcagaa tgtttctttt      1980
     tttccccaac ctaattaaaa agtccacact gaatagcttc aaaacacctg aagatgagct      2040
     ggaaagctat tgtaaagaaa tggttgatat aggagatgac tttgatgttt taaagtggtg      2100
     gaaggataaa gaacagacat atcccagact ctcaaaattc gcacttaatg tccactcaat      2160
     gccggcaagt agtgctgctg cagagcgcgg attttctttg gctggaaacg tgattactga      2220
     aaagaggaac cgtctttgcc caaaatctgt cgacagcata atatttttaa actcatatta      2280
     taaagcattt gaccattgat ttttttccga ttctttaata taatttctta attttcttta      2340
     gtatgtaaat gtaatgcata attaagttta atataaattt gaaatcaaaa tgcgacgaac      2400
     caatgaatat gttccttatt tgttttaaaa taaaattaaa acatgaaaat aaacgctttg      2460
     ttgtgaaatc attttcattg tgttgtgttt caccttcttc ttcgcacatt tcatctgtgc      2520
     aaaaaaagtt ccgtttkctg cgcgcatgag taaaatcata cgagttgatt tttgtgagtt      2580
     gagtgctatt cttgttcaaa aaaatgattg ttgaaccgaa tgagtagcgc ccgaaatcat      2640
     tatgctgaac acgagccgaa cgatttggag tgaaacaaaa aatcgctcgc acccgagttg      2700
     atttaaaatc tacaacgaaa atgtgagcgc atgcaagttt gatcggctga tccgaacagt      2760
     gtgattattc ggctgttgag cgcgtacgaa tttttttcat tcacccgaag ccgttctctg      2820
//
ID   hAT-2_DK    repbase;    DNA;    INV; 2474 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2474
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1224-1224 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(20..820,754..1794)
FT                 /product="hAT-2_DK_1p"
FT                 /note="transposase."
FT                 /translation="MALSRYRLFTFSEPPSIVVCHYRWCWAFLTSLILRTR
FT                 GLVDENFGKKLQFIKYYIISNQNGFLDKLKLNGGGGLSMDKYLRNLKRKGN
FT                 YNIFINNGKHVSNGYLYMYVYLDDNTTDKNSSDEENGGIKKARVGKSKVWN
FT                 FFVRSNDGKTAKCISCEKVYRTSGNTSNLFDHLKRVHPALKVGDLEVSSSS
FT                 KIDSFVTTCYDTHSRRKAELDRVVMRYITTDMRPYSVVEDTGFREMLKAFD
FT                 PRYKLPSRKTLKNVIMEEQYAEKELNITISKNIKKCDHGRAVCRKRIKLMD
FT                 ILKKIDFCGITTDIWTSVANEAFITITCSFVTEDFDLKTAVLSTNKLRCET
FT                 NHTAENIKETLQAVFDKWDISAKIVAIVTDNASSMIKACELLQKRNIPCFA
FT                 HTVNLVVQDCLKLDCLVPLLAKCKSTVTYFKSSTIAYKKLRDYQDGQTKYS
FT                 LKQEVPTRWNSAYYMIDRILKTHEAIGKVFLNTSKAPQPFTVDELDILLDL
FT                 TKLLAPFDTATKQVSSNTVVTISICIPIACGLMHTLDSVKSELKSSEGLAA
FT                 CKFLMDNIITRLSKYEERSITRIATLIDPRFKKQGFRSPFNSGQAEKLLEN
FT                 EMTLLKIFHTIPYSML"
XX
SQ   Sequence 2474 BP; 848 A; 434 C; 458 G; 734 T; 0 other;
     tagagctggg aaactatcga tggcactatc gaggtatcga ctttttacct tttctgagcc        60
     accatcgata gttgtttgtc actatcgatg gtgctgggca tttttgacat cactgatatt       120
     gcgaacacga ggcttggttg acgaaaattt tggtaagaaa ctgcaattta ttaaatatta       180
     cataatttct aatcaaaatg gatttttaga taaacttaaa ttgaacggtg gtggtggcct       240
     cagcatggac aaatacttac ggaaccttaa aagaaaaggt aattataata tttttatcaa       300
     caatggcaaa catgttagta atggttactt gtatatgtat gtgtacctag atgacaacac       360
     aacagataaa aacagctctg atgaggaaaa cggcggaatt aagaaagcaa gagttggtaa       420
     atccaaagtg tggaattttt tcgtcagatc aaatgatggt aagactgcaa aatgcatatc       480
     ctgtgaaaaa gtgtaccgta ctagcggaaa cacttccaat ttgtttgacc accttaaacg       540
     ggtacaccca gcgttgaagg ttggcgatct tgaggtgtcc tcgtcgtcaa agatagactc       600
     ctttgtgact acatgctatg atacgcattc cagacgcaaa gccgaactgg acagggtggt       660
     catgcgatac atcactacag acatgcgacc atattccgtt gtggaagata ctggatttcg       720
     tgaaatgctt aaagcttttg atcctcgata taaattacca tctcgaaaaa cattaaaaaa       780
     tgtgatcatg gaagagcagt atgcagaaaa agaattaaat tgatggacat tttaaagaaa       840
     attgacttct gcggtattac tacagatatt tggacttcgg tagcaaatga agcctttata       900
     actatcacat gctccttcgt cacagaagac tttgatctga aaacggctgt gttgtcaaca       960
     aataaactac gatgcgaaac aaaccacact gctgaaaaca ttaaagaaac attacaagca      1020
     gtttttgata agtgggatat ttctgccaaa attgtagcaa tagtaacaga caatgcaagc      1080
     tcaatgatta aagcgtgtga gttacttcaa aagagaaata taccctgctt tgcgcatact      1140
     gttaatttag tggtacaaga ctgtctcaaa ctagattgtt tggtcccttt acttgcgaaa      1200
     tgtaaaagca cggtgactta ctttaaatcg agtactatag catataaaaa gctaagagac      1260
     taccaagatg gacaaacaaa atatagtctt aaacaagagg ttcctactag atggaatagc      1320
     gcatattata tgattgacag gattttgaaa acgcatgagg ctatcggcaa agtttttcta      1380
     aatacgtcaa aagcaccaca accttttact gtggacgaat tagacatact tttggatcta      1440
     acaaaattac ttgctccatt cgatacagct actaaacaag tatcttctaa tacagtagta      1500
     acaatatcaa tatgcattcc tattgcttgt ggtcttatgc atacgttgga ttccgtaaag      1560
     tcagaactta agtctagtga gggtctagca gcctgcaaat ttttaatgga taacattata      1620
     actagacttt cgaaatatga agaacgttcg attacgcgaa ttgcaacatt aattgaccca      1680
     agatttaaaa agcaaggctt ccgatctcca ttcaactctg gacaggccga aaagctttta      1740
     gagaatgaga tgacactctt aaaaatcttt cacacgattc cgtactccat gctgtagagc      1800
     cgccaccacc acttcaaaac aatcaatctc aatccttatt taaatttgtt aaacaaaata      1860
     ttgaagaatt gcccaagaca aagagggtag acgcaattgt tgagcttcga caatatttta      1920
     acttgaatca tttggacgaa aatgtagatc cactccaata ctggaaggta actataccaa      1980
     tatgcactaa ccataagaag acataattaa taaaatttcc tttatttcag cataatgatt      2040
     caaatatgaa gcaattggtc gtaaattttt atgtgttccg gcaacttcca ctgagtcgga      2100
     gcgaatgttc agcaaggctg gactcataat gagcaaacgg agggcttcgc tggaggcaaa      2160
     aaaccttgat gctttattat ttttgcagag gaatgcctgg gtcaactaaa tattttcaac      2220
     tgactctaat ttaatttttg tttaaatgag ttgaactcag aaaagttcct tcagcctaat      2280
     tttgtattac tttgatctct tattttaagt tgttattttg ttagtattaa agcatttaat      2340
     atgaaaaata taaattaatt gcttttaata aaaagattgt actagaaacg atactatcga      2400
     tagtatcgaa ttttcgctct gaaaacatcg aaaatatcga atggtgccac tatcgatagt      2460
     ttcccagctc tagt                                                        2474
//
ID   hAT-2_DRh   repbase;    DNA;    INV; 2517 BP.
XX
AC   .
XX
DT   17-JAN-2012 (Rel. 17.08, Created)
DT   17-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2517
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1427-1427 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           649..1215
FT                 /product="hAT-2_DRh_1p"
FT                 /translation="MQKIFYKFEKSTSNLVKHKCYIMANSRKRSLPVVDVP
FT                 SETKKKCTNLATEWTIKNGRPFNLIADTGLKNLAQFFISVGAKLGENVNID
FT                 SVLPHPTTISRNIGALYDFHFNEVRXEIKEQKQYGYSITSDFWTDDFFKES
FT                 YISLTMHYVKEGILKNRLLAVKSMGGVSCTGKKYKMLLEYIIFNENIKIS"
FT   CDS           1200..2171
FT                 /product="hAT-2_DRh_2p"
FT                 /translation="EYQNFLGNEIKNKIARILGDFGCDLLMDDPIIVTDRG
FT                 ANMKAAFNGLSAIHCANHLIHNVIGKVVKEVPELLDLVNRCSKLVKYFKKS
FT                 GQNWNXTSTLKSYCPTSLKSVELNWMEISQILVEKNEISRISDINLINISG
FT                 MVNLLAPFESCSKKLEGSNYPTLHLTVPHINNLKKISSPNDNDIKIVEKCK
FT                 LSLLEYLDSIVLENLKKYHNIALFLFPPTNKLTKFTEIEKEQTLKDVEEMM
FT                 VNIHLNSENDDVEXLIKPTRDLDDVFXDLIQNLRAPKIFPIFRMNLKRIKM
FT                 LIKHILKILRFWSGGEIIKTVFLCFIKLAARY"
XX
SQ   Sequence 2517 BP; 859 A; 422 C; 478 G; 741 T; 17 other;
     tagacttctg catgaatgta ctcatttgta gcataacaga tctgtacagt agtacggtgt        60
     tcttaaaaat actgcactca ttctttactg tacagtatac tctataggcc agaagaagat       120
     agcacaacat tttcagtgta ctcacttcgn gtgagtgcag tatatggttg tactcttcgt       180
     gagtgactac tacgtgttgt ncttttttaa acacgctgta cagctgtcga gttgactgag       240
     tacaactgtg cagatgagtg cagtattttt gaataagtgc ataaagatgg attttaagga       300
     aaacgacgct cgtgcaatga nctcacnaga taatgtaagt ttttgtcata atatntatgt       360
     tttgtaacaa agtatatgtg ttgttttata tgtttgtgat tgtcttttat atgttgaagg       420
     ttatttagtg ccagagaccc aggcaaaaac agtgattgtt aaacatatgt atgtatttgt       480
     atgttnattt gtagtatana ttttgttcac atgtatgtat attaaaaaat tattagctgg       540
     tgagctnaag cctactggtt cacgtggtcg gagcaaagtg tgggacacct tttcacggct       600
     ggcaacggca aacggcataa tgacgacana cgcagtagtg tgcaacatat gcaaaaaata       660
     ttttataaat ttgagaaaag cacatcgaat ttggtnaaac acaaatgcta cattatggcc       720
     aatagccgaa agcgcagtct tcctgtcgta gatgtaccct cagaaaccaa aaaaaaatgc       780
     accaatctgg caacggagtg gacaataaag aatggtagac cgtttaatct aattgcggac       840
     actggcttaa aaaacttagc acagtttttt atttctgttg gtgcgaaact gggggaaaac       900
     gtcaatattg actccgtact gccgcatcca acaactatat cgcgaaacat cggtgcgctc       960
     tatgattttc acttcaatga agtaagaanc gaaattaaag agcaaaaaca atatggatat      1020
     agcataactt cagatttctg gacggacgac ttctttaaag aatcttatat ttctctgact      1080
     atgcattacg tcaaagaagg catccttaaa aaccgcctgc tagcagtgaa atcaatgggt      1140
     ggagtctcct gtaccggtaa gaagtataaa atgttattgg aatatataat atttaatgag      1200
     aatatcaaaa tttcttaggt aatgaaataa aaaacaaaat agcgcgaatt ttaggtgact      1260
     ttggatgtga tttactgatg gacgatccaa taattgttac cgaccgagga gctaatatga      1320
     aagcagcatt caacggactg agcgcaatac actgtgcaaa tcacttgatc cacaatgtaa      1380
     ttggcaaagt tgtgaaagaa gtaccagaat tgctggatct ggttaatcgc tgcagcaagc      1440
     ttgttaagta ttttaaaaaa tctggacaaa actggaactt nacaagcacc cttaaaagct      1500
     actgtccaac ttcgttgaaa tcggttgagt taaattggat ggaaatttcg cagattttgg      1560
     tggaaaaaaa tgaaatatca agaatttcgg atataaattt aattaatatt agcggaatgg      1620
     tgaaccttct tgctcctttt gaaagttgct ccaaaaagct ggagggtagc aattatccaa      1680
     cattgcactt gactgttcca catattaata acttaaaaaa aatatcctca ccaaatgaca      1740
     atgatataaa aatagttgaa aaatgcaaac tttcgctttt agagtactta gattcaatag      1800
     ttttagaaaa tttaaaaaaa tatcacaaca ttgcactgtt tttgtttcca cccactaata      1860
     aattaactaa attcacagaa atagaaaagg aacaaacttt gaaggacgta gaagaaatga      1920
     tggttaatat tcatttaaat agcgaaaatg atgatgtaga anatttaatt aaacctacgc      1980
     gagacttgga tgatgtattt gnagatttaa ttcagaacct cagagcacca aaaatttttc      2040
     ctatattcag gatgaactta aaacgtataa aaatgttaat aaagcatata ctgaagattt      2100
     tgaggttctg gagtggtggt gaaataataa agaccgtttt cctctgcttt atcaaattag      2160
     ctgcaagata ctagcagctc ccgcgagcag tgcagcatcg gaaagggcgt tttctgttgc      2220
     catacataca cacgaganct atatatgtgt gtatgtacca gtcatgaaat ttcactcact      2280
     gtacagtaag tnnactgcac accaaaacac tgtacagtgc gttgactact gcacaccaat      2340
     tttgctgtac tcatcaacag ctgtacaact atggaatgag tgagaacact gtcaatcaaa      2400
     acagacaata ctaccctact cactcacacc caaatatact gtgcagaaaa aaaagtgtgc      2460
     ccacttctag actaagtgat tcatttgtcg ttttggatgc attcatgcag aagtcta         2517
//
ID   hAT-2_DSe   repbase;    DNA;    INV; 2568 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.12, Created)
DT   09-OCT-2009 (Rel. 14.12, Last updated, Version 1)
XX
DE   Hosec2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Hosec2; hAT-2_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2568
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           942..2096
FT                 /product="hAT-2_DSe_1p"
FT                 /translation="MRRISLHFINECYGLKSAVLSTHKLVDATNHCASNIA
FT                 NSLSAVLNECNLFNKVVTIVTDNDASMKEKCELMKMKHLPCVSHTFNLLVQ
FT                 DLLKIDSIVPLLAKCKRIVSLFKSSSIATKKLKNAQTSKSRYGLIQEVPTR
FT                 WNSAYYMIQRIILVNDSLSALLLNSTKDPRPLSADEMFVLVEICQVLAQFH
FT                 EATVQISTNKTLSISVIIPLIYELHQKSCKVYSQVISHPALDICEAVKKRL
FT                 PERFSHYETRTVTRIATLLDPRFKKDGFLFTSNSEKAAKALQLELFSSLSR
FT                 VLSTPDISTPPNTPQEKRNSFFTFLETKISNKVHSNIRMLLRTYFEGPNEP
FT                 EDKDPLAYWMVRISFLLFKLNIHDFIPFQANSESLKPITKLF"
XX
SQ   Sequence 2568 BP; 839 A; 471 C; 451 G; 807 T; 0 other;
     ggaaaaccat cgatggcact atcgatacta tcgatatttt taagtttttt caaaccatcg        60
     atgcttttcg aaaacaatcg aacaatccgc actggcgtca ctaccacttt tgatacagcg       120
     agagagacat gtaagtttgg taaattttat acggaatgga aatatagttt tctttctcca       180
     gattatagaa aggaaataac tgtttgagaa gattggtggg gtttggaaga agttgggaga       240
     tggataaata cttgaaaagt aagtactttt aatgcaaaca ctcaatcaga ctcgttcgcg       300
     tacaatgtgc acatgtgtat gtatatatat atgtgcatgt agccacaaaa tatgcatttg       360
     cacgtgtttt ttaaatttat attaagtaac ccctgtattc ttgatttcag accctttaac       420
     aactgtggat aacacgattc caaaccttca aagagattac tgtatggacc atttagaaac       480
     taagatgctc aggagcgttc acagatgtgg taagctctat aaaactctgg gatcgcatcc       540
     atttattgga tcacttaaac atgcacaatc ccgaatatct gaagctgaaa aggttgctcc       600
     ttccactagt ttggaacggt tcctaaaaac tgacctcact tataaaaatg ggtcagcaaa       660
     aaaaaaacgg atctggacaa ggcagtaatg cgtatgatcg cgctggatgt ccaacccttt       720
     ttttttttgt tgaagatagg ggattctgcg atttgattcg aaagctatac ccgaggtaca       780
     aggtacccag ttaaagccat ctcagaaatg ttgatcttcc acgtgaatat gtaggcttaa       840
     aattgaagtt ggaggaggat ttaagttacg ttgacaatgt atccattact actattacta       900
     ttactttaac tataattact attgttggac ctcgcgtgct aatgagacgt atctcacttc       960
     acttcattaa cgaatgctat ggacttaaat cagcagtttt gtcgacgcat aaacttgtag      1020
     atgcaactaa ccactgcgct agtaatattg cgaactcact cagcgccgtt ttgaatgagt      1080
     gtaacctttt taataaggta gtaacgattg taacagacaa cgacgcgtct atgaaagaaa      1140
     agtgcgaatt aatgaaaatg aaacatttac cttgtgtctc acatactttt aatctattag      1200
     tgcaagatct tctaaaaata gattctatag tgcccttact agcaaagtgt aagagaatcg      1260
     tatcgctttt caaatcgagt tcaatcgcaa caaagaaact taaaaatgca caaacttcta      1320
     aatcacgcta tggacttata caagaagttc caacgcgttg gaatagcgcg tactatatga      1380
     ttcaacggat tattttagta aatgactcgc tttctgcatt gcttctaaac tcaaccaaag      1440
     atccaagacc attatcagcg gacgaaatgt tcgttctggt tgagatatgt caagttctag      1500
     ctcagtttca cgaagccaca gtgcagatat cgacaaacaa aactctttcg atttccgtaa      1560
     taatacctct tatttatgag ttgcaccaaa aatcatgcaa agtatacagc caagtaattt      1620
     cacaccctgc gcttgatatt tgcgaggcag taaaaaaacg attgccagag cgtttctcgc      1680
     attacgaaac tcggactgtt actagaattg ctacattact ggatcccaga tttaaaaagg      1740
     acggtttttt gtttacatcg aactcagaga aagccgcgaa agctttgcag ttggagttat      1800
     tttcaagttt gtcccgagtt ctttccacac ctgatatttc aacaccacca aacactccac      1860
     aagaaaaaag aaacagtttc tttacttttt tagaaactaa aatttcaaat aaagttcact      1920
     caaacatcag aatgctcttg aggacatatt ttgagggacc taatgagcca gaggataagg      1980
     atccccttgc ttattggatg gtaagaatat catttttact ttttaaatta aatattcatg      2040
     actttatccc ttttcaggca aacagtgaga gtctgaagcc aataaccaaa cttttttaaa      2100
     agtacctgtg cattccggcc agttcaacag aatctgaaag aactttcagt aaacctggtc      2160
     ggattgtatc tgaccgctga gcttcgctta aaccaaaagt agtagatgtg ctactttttg      2220
     tgaacaaaaa ccagaaacaa tgatctcttg ttgtcttaat atgaatataa aaaaaaaata      2280
     ttttgttatt actaaatatt ttgaatactg tgttaattta aataaagttt gcattgaagc      2340
     aaataaaacg ttttagtttt tgtttaaaaa atgcatttta aatcctttgc aggcccttat      2400
     gcatatttct aaagggctac tgtaatatat tatttttatt ctgcaagggt atataaactt      2460
     cggttcacgt tatattatag ttccattttt ttttttaact atcgttaata tcgatgtttt      2520
     tagaaaacca tcgacaccat cgatagtgcc aaccatcgat ggttttcc                   2568
//
ID   hAT-2_DT    repbase;    DNA;    INV; 2634 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.08, Created)
DT   31-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA trotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2634
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1442-1442 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus (low-copy).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           421..1098
FT                 /product="hAT-2_DT_1p"
FT                 /translation="MKVLSGTFTISQKRGRSEVWEIFGNVLNEKGEEITNV
FT                 VACKKCSHAVKYSNSTSNLARHKCFKALEPKCEDEPEVKIDNETKSKIVKL
FT                 AAEWTVENCRPFELLADSGLLKMADALIRLGSKLGQNLKATSVLPHPTTVS
FT                 RQISKLYAVHQNRVKTEICENRKQGIGYSVTTDGWTDNIYKSAYVSVTIHY
FT                 VIKGSIMSRLLSVEATKGEPSTGINLYFTSAYLLCI"
FT   CDS           1064..2224
FT                 /product="hAT-2_DT_2p"
FT                 /translation="TYILHQLIFSVFNLPTYLAGVNLKKTVARCLLEFECH
FT                 LDQDNVIVVTDRGANMISAYKNNKHIYCINHMLNNVVEKSFDDPDMNKMLG
FT                 QASKLVKYFKKSGENSNLKSSLKSLCPTRWNTAFYMLRSIQDEWAAISGIL
FT                 IRKKEESRLGDLNLKNLKEVTEILEHFEKTSKFLESENYPTLHMVIPEIHS
FT                 LKKKCKIDSNDSDLACSLKILLFNYIDSIVIPNITEYHKIALFLFPPGNEL
FT                 LQFTDTEKFKTIEDCKQLMKNFLDAHDENGNQQTVSKTNDRFADFVRNFAN
FT                 DTADDKVDREMTAYLTTITLYTEDFDPLKWWETNKNQFPLLFKASCQVLGT
FT                 PASSASSERSFSLAGNLISEKRNAIATNPEMIKEIMFLNCNTNK"
XX
SQ   Sequence 2634 BP; 909 A; 498 C; 490 G; 736 T; 1 other;
     tagagccctg cacgagtaga ctcgtaaaca gctctgagct agagtttgtt tgtttgtttg        60
     tgactttcga gtcataggtc atgggattat cgagtaagca agtaacagct ccaaacaagc       120
     tcatgtgcct aacggatacc tttaaaacag ttcagttcaa acagctcaca acaacaaagc       180
     aaacaagtca aacagctcag attactcgga cagcccgaac agaccgaaca gctcacaggg       240
     tctagtgtca aatatttccg gctaataaaa cgagcgagtt cgtaattatt atttctttat       300
     atagtttttc gtaacattcg taatggcttc tgtaccacag gtaagtatcg ccaaagcatc       360
     tacactttgg taacaatttt aaagtctaat tagtctcagc taagcttgga tgaaatcagg       420
     atgaaggttt tatctggtac ttttaccata agccagaaac gtggaagaag cgaagtatgg       480
     gaaattttcg gaaacgttct aaatgaaaag ggagaagaaa taaccaacgt cgtagcatgc       540
     aaaaagtgtt cacatgcagt caagtatagc aactctacat ctaatttggc taggcataaa       600
     tgctttaaag ctcttgagcc aaaatgcgaa gatgagccag aagtgaaaat tgacaacgaa       660
     acgaagtcaa aaattgttaa attggcagca gagtggaccg tcgaaaactg tcggcctttt       720
     gagctattag cagactcagg ccttttaaaa atggcggatg cattaataag actcggatcg       780
     aagttaggtc agaatttaaa ggcgacttct gtgcttccgc acccaactac tgtttcaaga       840
     caaatctcga aattgtatgc tgtgcatcag aatcgtgtaa aaacggagat atgcgaaaac       900
     agaaaacaag gtatcgggta cagcgttaca acagatggct ggacagataa catatataaa       960
     agtgcatatg tttcagtgac aattcattat gttataaaag gatcaattat gagtcgactt      1020
     ctgtctgtgg aggctacgaa aggggagccc tcaaccggta taaacctata ttttacatca      1080
     gcttatcttc tctgtattta atttaccgac ttatttggca ggtgtaaatt taaagaaaac      1140
     tgttgcacgc tgtcttcttg aatttgaatg tcatcttgat caggacaatg ttattgtggt      1200
     gacggaccga ggagcgaata tgatttccgc gtacaagaac aacaagcata tttactgcat      1260
     taatcacatg ctcaataatg tcgtagaaaa atcatttgac gacccagata tgaacaaaat      1320
     gctaggacaa gcttccaagc ttgtaaaata ttttaaaaag tccggggaga actctaatct      1380
     taaatcgtcc ctaaaaagtc tgtgtcctac gcgatggaat actgcgtttt atatgctgcg      1440
     ttctatacag gatgaatggg ctgcaatttc aggaattcta ataaggaaga aggaggagag      1500
     ccgtcttgga gatcttaact taaaaaacct aaaagaagta actgaaattc tcgaacattt      1560
     tgaaaagacg tctaaatttc ttgaaagcga aaactatccc actttacata tggtcattcc      1620
     agaaattcac tccctaaaaa aaaagtgtaa gatagactca aatgattcgg atctagcgtg      1680
     cagcctcaaa attttattgt ttaactacat agactccatt gttataccta acatcactga      1740
     gtaccacaaa atagctttat tcttattccc accaggaaac gaacttctgc agttcacaga      1800
     caccgaaaaa ttcaaaacaa ttgaagactg taaacaatta atgaaaaatt ttttggatgc      1860
     acatgacgaa aatggaaatc aacagactgt ctcaaaaacc aatgataggt ttgcagactt      1920
     tgtacgcaat ttcgcgaacg ataccgctga tgataaagtc gaccgggaaa tgacagcata      1980
     cttaacaact ataacattat acaccgagga ctttgatccc ctgaagtggt gggaaaccaa      2040
     taaaaaccaa ttcccattat tatttaaggc aagctgccaa gttctgggaa cccccgcaag      2100
     cagtgcttca tctgaaagat ccttttcttt ggccggaaat cttatttcag agaagcgcaa      2160
     tgccattgca acaaatccag aaatgataaa ggaaataatg ttcttaaact gtaatacaaa      2220
     caaataaaaa tttataacat caaaacaact tattagccaa aataagaaac gttgaactgc      2280
     tataagtaaa ttaattaaaa tattaagcaa tataatattc cccgaatttc ttcaatcaga      2340
     ttgcttttcc tacanaagat ctgttcctac ataacattgt tgagctctgt acctacataa      2400
     cacttttgag ctctgttcct acataacatt ttttaggtat gttcggatac ttgatctact      2460
     aaacatgatc tatgatctac tatacttgct ttttttcgat caaacaaaca gctcaacgta      2520
     aaaatgtgtg agctgagcta cttgatccga aaatttctat gagctgattt actcgaactg      2580
     tttttctgaa atttgagtca aagggcattt cgagtatact cgtgcagggc tcta            2634
//
ID   hAT-2_DY    repbase;    DNA;    INV; 2593 BP.
XX
AC   .
XX
DT   08-JAN-2012 (Rel. 17.09, Created)
DT   08-JAN-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   hAT-type sequence: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2593
RA   Jurka J.;
RT   "DNA transposon families from fruit fly.";
RL   Repbase Reports 12(9), 1733-1733 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(766..1098,1141..2265)
FT                 /product="hAT-2_DY_1p"
FT                 /translation="MIGDTGLKEFATFLIGVGATYGANVDVDNLLPHSTTI
FT                 SRNVASLYEERFGPVKAEIGKFKRFGYAVTSDVWTDNHLRLSYLSCTIHYI
FT                 KEGVLVNRLLAVKCMKGESCTGNLFNYFLGVNIRTKLMDILQNFGCNLDED
FT                 QPVIVTDRGSNMIAAFQKYDHIHCVNHLLHNIVEATVKHITEFSKLVDNCS
FT                 KLVKFFKKSGSNFFLNETLKSLCPTRWNTVFFLLKSIEGNWIEISNTLKEK
FT                 NQTARIESIHINELTGITGVLETFTDLSKKFESSQFPTIHFTIPYINKLKK
FT                 ACQPQLSDSDLVSDXKLTLSQQITQTILPYVTKFHKISLFLFPPTNKLLQF
FT                 AEEEKKNVIQNCKALLARFEFENFEMENKENVPVHDDTFDDFVEIRSDNNN
FT                 SDHIDQEINMYINTNTTYFDGFNCLAWWNEHKNMFPNLYKASCKIFCIPAT
FT                 SAASERAFSDARNLITDKRSAISLNSENINKIMFLHNNIEN"
XX
SQ   Sequence 2593 BP; 882 A; 444 C; 469 G; 793 T; 5 other;
     gggctgcata acaccattct ctttgtttgc atttagagta ctcattcgtt ttagtatgta        60
     ttcagaatac ataccattca gttgtcgcga tctctttgcg ttcacttcgt atgcgttcgg       120
     agttttgggc acccgagcga aatgaactca atgaatgcgc gcgaaaacta aatgaagcca       180
     atgaattttc aatagaaatt cagagtactc tgaatacttt atgttgtcat tgtgtaaaat       240
     gagttcggac agcgcggagg taagtctaag ttttctgtgt ttgtgtatta ttatgtgcgt       300
     gtgcgtctta tttaataata ttgtagcatt tgtctaatac gaatatataa attgtgttgt       360
     caaatataaa tatttaaaaa agaatagtaa aaaaaaataa taaaatcgtt tatatagcta       420
     acgtcaggcg acgcatcgtt tatcgaggag tcggcgactg naataaaaca gaaattggag       480
     aacggtgtat attcgttaaa ggggaaaaga ggtcgtagca aagtctggga atattttttn       540
     caagtaaacg atgaagatgg aaatcagata aaagattttg tggcctgcaa gatctgtaaa       600
     agtgtttata aattttccgg caacacctcg aatttagtta aacgtaagtg ctatattata       660
     agctgtcgaa ataaccatgt cctaaccaat gttaattctg aaacaaaaaa ggaagccacc       720
     gcaattgcta cgaagtggat agtaaggaat tgtcggccat ttaaaatgat tggcgatact       780
     ggcctcaaag aatttgccac gttcttgatc ggcgtgggag caacgtacgg tgctaacgta       840
     gatgtcgaca atcttttgcc ccattcgaca acaatttcaa ggaacgtggc atcgttatat       900
     gaagagcgct ttggtccagt taaagctgaa attggaaagt tcaagcggtt tggctatgca       960
     gtcaccagtg acgtatggac agacaatcat ttaagattgt cgtatctgtc ctgtaccatt      1020
     cattatataa aagagggcgt tttggtaaac cgacttttag cagtaaagtg tatgaaagga      1080
     gaatcctgca caggtaattg aatttaacta taaattgaat gacaaaatga ttaatgctag      1140
     ttatttaatt attttttagg tgtaaatatt cgtaccaaac tcatggatat attacaaaat      1200
     ttcgggtgca accttgatga ggaccagcct gtgattgtta cggatagagg ttctaacatg      1260
     attgcggctt tccaaaaata cgatcatatt cactgcgtca atcatttatt gcacaacatt      1320
     gtagaggcaa cggttaaaca tattacagaa ttctctaaac tggttgataa ttgcagtaag      1380
     ttagtcaagt tttttaagaa gtcaggctca aatttttttt taaatgagac gttgaagagc      1440
     ttgtgcccaa ctcgatggaa cacagttttc tttctattga aatctataga gggaaattgg      1500
     attgagattt cgaacacttt aaaagaaaaa aaccaaactg ctagaattga aagcattcat      1560
     ataaacgaac ttacaggtat cacaggagtt cttgaaacat ttaccgactt atccaaaaaa      1620
     tttgaaagca gccaatttcc tactattcat ttcacaatcc cntatattaa caaattaaaa      1680
     aaagcctgtc aaccacaatt gtccgatagt gaccttgtct ccgatatnaa gttaactctt      1740
     tcccaacaaa taacacaaac aattcttccc tatgttacaa aattccacaa aatttcttta      1800
     tttctatttc caccaacaaa taagttgctt caatttgctg aagaagaaaa aaaaaatgtt      1860
     attcagaatt gcaaggcact cttggcccgt tttgaatttg aaaatttcga aatggaaaat      1920
     aaagaaaatg taccagtaca tgatgataca tttgacgact tcgtcgaaat acgtagtgac      1980
     aacaacaaca gtgatcatat cgatcaagaa attaatatgt acattaatac aaacactaca      2040
     tattttgacg gatttaattg tctggcttgg tggaacgagc ataaaaacat gttcccaaac      2100
     ttgtataaag ccagctgcaa aattttttgt ataccagcaa ctagcgctgc ctctgaaaga      2160
     gcattctcag atgctcgcaa tttaataaca gataaacgtt ctgccatttc gcttaactcg      2220
     gaaaatatta ataaaattat gtttttacac aataacattg aaaattaaag aaaaaanata      2280
     tatatattta taagataaga atataatgta ttatcagtta agtaataata aacaataata      2340
     ttaaaacacg aatttagcat cttttattga aactcacaca cacacacaca tacgcagacg      2400
     agacattcga atcacccatt cactttactc ggtcttcact tcattcgttt cagaatgtgc      2460
     cgtttggatt gaatgaattg aagtcggcgc gcgttgccga cttcacttcg ttcatttgca      2520
     aacgcgccga attcacttcg ttcgtttcaa cacgaatgtc tcatttgccg gtttgaatgg      2580
     tgttatgcag ccc                                                         2593
//
ID   hAT-2_FoCa  repbase;    DNA;    INV; 2861 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2861
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2480-2480 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 8-bp TSDs. 10-bp TIRs.
XX
SQ   Sequence 2861 BP; 995 A; 498 C; 559 G; 808 T; 1 other;
     cagtgtttct ttttgtgcgc ataatattat ttttgtgcat gcatagtgca taatatgcac        60
     aaaaatgcac aaaaatgcat aatatgcaca aaaatgcaca aaaatgcata aaaatgcaaa       120
     caaaggcaga gtgccgggaa attatctttc atatccactc aactcagtag aattttccag       180
     gattaaaaac tgtaaaagct attgtaaaaa gttatataag gcgcgttttc ctcgaggaca       240
     atggcacaat cttatcgatt ggtttcaatg gattctcaag agattaggga catgttggac       300
     aattcaggta aataaaaaaa atattaatta ttttacgaaa ttcgatattc atgggcaact       360
     caacgtgtgt ttatttatat tattttttaa taaattgcag aaaacgaaac tgattcgaaa       420
     ttaacttaca tggaaagtat tggtaagcat attgtcatta tcgtactact aataattcga       480
     ataatagttc gaattacttt tagacgatta taaatatata gattattatc aattttagat       540
     ctattccgac ccagtgaaca cgagaacgaa cagatggttc cagacgaaga cgaagacggt       600
     atgaatgaat ttgaaatttc attaaatcac aacccataaa atccaatata tctctatctt       660
     tagagtcatc ttcattaagc caggatccta attaccagcc tggatcagat tctgaagtcg       720
     aagctagcct gtcagagaat cggaatcaag acaatgttga aattgtcaca aatactccca       780
     aatctggaac cggaagaaaa cggtcaagag gtcgacctca aaatcaggtg tggctggaat       840
     tcatcaccgt aacaagagga aagaatttta tttcaaataa atgcaaacac tgtaaggaac       900
     aagtaagcgc tcaatcaagt cgaatggaaa atcacttgaa aaagtgcagg aagtttaata       960
     aaactccagt ctcccaagga ctccctaccc caatcagtcc gcctgttgga aaagaatcag      1020
     ctgcaaccac aaagatcacc aattttatgt acaaaatgct tcccagaaca aaagacaaat      1080
     tggacgaatc ccttggaaaa tttatctact cggcaaattt accattcaat gttgtagaaa      1140
     acgagtattt ttgcaaattt gttggactcc ttaatccaag ctatgtattg cccaaacatg      1200
     aaaccgtcgg tggttttcta cttgataatg aatttaagcg aacagaattg gaattaacaa      1260
     agcaattgga aaatcagaaa gtggtcctcg ctcaggatgg gtggagcact acccagcaag      1320
     aaccggtgat tgcgcatagc gcaatttgta atggacaatc ctttttcttg ggtgcagagg      1380
     cgacaggtgg ttctccgaag actgctgaat tttgttactc attattcgaa aaacaattga      1440
     agcagcttga aacgattaat tgcgaggttg taggactggt sactgataat tgtaatacaa      1500
     tgctagcgct gcagaacctg gtcaagaaaa ataaccccaa tgtaattgtt tacggatgct      1560
     cgccccattt gctaaatcta gttggccagc actataccaa caaagagttg atggacaaag      1620
     ttatacaagt tcagaaatat tttcggaatc attactacgc cagagccgat ttgaaatctt      1680
     caaaggggaa acgtccagtt ctacctatgc ccgtacgttg gaactctcaa accgactgtt      1740
     gtttgtctta tttagaaaat aacggcaaat acctagagat catccgtgct cgacggaaca      1800
     cgtcagaaag aacgaaatcg gagcgtgatg aagacgattc tgtgtatgcc ataatatcgg      1860
     atacgagttt gtatgattca gtggagcaaa tgataaagtt gtttagttct gtggttaagg      1920
     cgattgatag tgtaagtatt cttaaacttt taatcaagat tttaaaattt gcaaaaccaa      1980
     acaaaaattt cttatttcca actttagttg caacgcgagg acgcaaatct ggcggatatg      2040
     tgtcaacagt ggatcacagt tcgggaggaa attcctctca aatacgcgaa cgacaattat      2100
     ttccaggaga aaatgaaaat ggcaatgacc gatatagcaa ttacggcgca tatgctacat      2160
     cctcatttta aaggcaatat atttttcaaa tcctaaattt tgttgatagg ctaaaaagta      2220
     atatttataa taatatttga actaggggac ggactaaccg aagttgagaa agaaaaaggt      2280
     cgtaaaatcc tgaacaagaa aggaacttta tatttattag ccgcaatgga tttgcataat      2340
     tctgatgcat cagttttctc ggaaacaatg ctacttgaaa gttctacgag gtcgattcca      2400
     ccacaaaaat ggtggagagc tgcaaatcaa aacaaattac caaaagggtt tacggaattt      2460
     gctgtgtccc tatttaatct tccggcaggg acggcgtctt tagagaggaa tttctcatcc      2520
     cttggaaata tcctgacaaa gaagcgcaat cgccttggcg tagagaaagc atcgaaacta      2580
     tgtagagtaa atcagacgct acacaaaact ggggaggaaa aagttccgac ttcaaggaag      2640
     cggaaatggt ttgatagtat taatagcgat gagaacatgt agtacatacg ttagtattgg      2700
     tctaataaac taagtatgta acattattgc attgtgggca ttaaaattat ttttgtgcat      2760
     ttttgtgcat tttgtgcact tctaggtggg tgttattaaa cgcataaaaa cattattatg      2820
     cactaatttt gtgcagctgt tttttaacag cagaaacact g                          2861
//
ID   hAT-2_LMi   repbase;    DNA;    INV; 2342 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2342
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3027-3027 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1988
FT                 /product="hAT-2_LMi_1p"
FT                 /translation="MASTSKTEQSVFLSVWENLFLFVQCGEGAKCLVCNRE
FT                 VRSIKKSNLQRHYSLCHANEYGKYEGEERDALISELKERADVEDCQSSEAS
FT                 VRLSYRIALHIAKKVRPFTEGDFAKEVIVMAAEEMCPHLVEDFEKVSLSPK
FT                 TVMRRIQDMAADVQEELGVTARKFIHYSLAVDESTDISDTAQLAIFIRGVD
FT                 DKLNITEEFLDLIPLKGTTTGLDIFKGVEKAVENVGLSWNKLVSVATDGAP
FT                 SMVGVNVGLIARVKERMKHVSGATQELTAVHCILHQENLCAKYMKIRNVMD
FT                 TVVQVTNSIRSRGLRHRQFKSFLEECGTQYGDLPYFCNVRWLSRGKVLDRF
FT                 FELRNEIALFMTSQNQPVPQLQEETWICDLAFLADLTGHLNDLNTSLQGKG
FT                 LLITDMYYRIKAFKMALNLWMNQLQAGNTAHFPKLSQVRAPDLTLSEEYVQ
FT                 ILEALRNQFESRFENVEILSTMFQLFATPFSVDVNNVPTRFQMELLNLQCD
FT                 DLLKDKYKHNEGLADFYKNVPQNRFPRLYALASRILCMFGSTYVCEQFFSI
FT                 MKLAKSQYRNTLSDHNLTCSLRLKISQTLHPNIEKLTKEKQMENVGKCLLN
FT                 CTVQLCSKL"
XX
SQ   Sequence 2342 BP; 696 A; 447 C; 528 G; 671 T; 0 other;
     cagaggaaga caacttcagg cggtgtgacg tgtgagcagg aagagcaagc ctgtcaatcc        60
     gtgtgacgtc aggcgagagc tgtgttcgca atgttgccta gataaacggg gctgtgagta       120
     cggagctgga gggctcagtc agcaatagcg ctcttgacga caataacatg gcgagtacaa       180
     gcaaaacgga gcaatcggtt tttctttctg tgtgggaaaa tctgtttctt tttgtgcaat       240
     gcggtgaagg tgcaaagtgt ttggtgtgta acagagaagt acgaagtata aaaaaaagta       300
     atttacagcg tcattattcc ctgtgccacg caaatgagta tgggaaatat gaaggagaag       360
     aacgagacgc cttaatatct gaattaaagg aacgtgctga tgtggaggac tgtcagagta       420
     gcgaagcgtc tgtccgtctg agctacagaa tagctctaca tatagccaag aaagttagac       480
     catttactga gggtgacttt gcgaaagaag tgattgtgat ggccgctgaa gaaatgtgtc       540
     cacatttggt agaagacttt gaaaaagtga gtttgtctcc gaaaactgtt atgcgacgta       600
     ttcaggacat ggctgcagat gtgcaagaag aactgggtgt tacggcacgt aagtttatac       660
     attattcttt agctgtcgat gagagtactg acatatcgga tactgcacag ttagctattt       720
     tcattcgggg cgtcgatgat aagctgaata taacagagga atttttagat ttgatccccc       780
     tcaagggcac caccactggg ttggacattt tcaaaggcgt tgaaaaagct gttgaaaacg       840
     ttggcctgag ttggaataag cttgtttctg tcgcaacaga tggggctccg tctatggtag       900
     gagttaatgt gggattaata gcacgggtga aagaacgtat gaaacatgtt tctggtgcaa       960
     cacaagaact cactgccgtc cactgcatac ttcatcaaga gaatctatgc gcaaaatata      1020
     tgaaaattag aaatgttatg gatacggtgg tacaagtcac aaattccatc cgatcacgag      1080
     gcctgagaca tagacaattt aaaagttttc ttgaagaatg tggtactcag tatggtgatc      1140
     ttccttattt ttgtaatgtg cgctggttga gcaggggtaa ggtgctagat cgattctttg      1200
     agttaagaaa tgaaatagca ttattcatga ctagtcaaaa tcagcctgtt cctcagttgc      1260
     aagaagaaac ctggatttgt gacttagcat tccttgctga tttaacaggc cacttaaacg      1320
     atttaaatac ctcactccaa ggaaaaggcc tcctcataac agatatgtac tacagaatta      1380
     aagccttcaa aatggcactg aatctgtgga tgaatcaact gcaggctgga aacactgcgc      1440
     attttccgaa gctatcgcag gtgcgtgctc ctgatcttac tctctctgaa gaatatgtgc      1500
     aaattctgga agctcttcgt aaccagtttg agtccaggtt tgaaaatgtg gaaatactgt      1560
     ctactatgtt tcagctcttt gcaacaccgt tttcagtgga tgttaacaat gttcctacca      1620
     ggtttcaaat ggaactgtta aatttacagt gtgacgattt attgaaggac aaatataaac      1680
     acaatgaagg cttggcagat ttttataaga atgttcctca aaacagattt ccgaggttgt      1740
     atgcccttgc ttcacggata ttgtgtatgt tcggttcgac gtatgtgtgt gaacaattct      1800
     tttctattat gaaattagca aagtcccaat accgaaacac cttgtcagat cacaacctaa      1860
     catgcagtct tcgattaaaa atatctcaaa cattgcatcc taacattgaa aaactaacca      1920
     aagaaaaaca aatggaaaat gtcggaaaat gtctacttaa ttgtactgta cagctttgct      1980
     ctaaattgta gagaaaattg tattatgttc cattctcttt ataacagtgc tatcctcaca      2040
     ttaaattaca cctacattat aatgttctca tggtatagag acgatataca attgtctgta      2100
     atctgtgtct attatttaat taaaacagta tgttttaaaa ttaggatatc gtagacctca      2160
     ctgtattctt cacaccagat ctgttccctg tctttcctaa attgctgcac tccacacgct      2220
     gcattctatt tctccgcggc agcagtacag agcgcgtgac gtcacacggt caactctcct      2280
     tccttgtgag caggcagagc ggcctgggct gacgtcacac cggcgctgcc tgtcctcccc      2340
     tg                                                                     2342
//
ID   hAT-2_PBa   repbase;    DNA;    INV; 4706 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 19.03, Created)
DT   15-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4706
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 650-650 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(825..1193,1656..3119,3011..4018)
FT                 /product="hAT-2_PBa_1p"
FT                 /translation="MFKAVSFLAFNVDFNTQMAFTVVDDNLFRFFVLTSVK
FT                 RENILSGAAFEFGSALVEFKRALKLGYLVSLFKYCLCKISFHILSKFNFNK
FT                 SCFSVTEKSEFKTNHSFFKSFSSKPPILAAIKERSSVSFTFLVLLYFHFDM
FT                 ESCDALKKKVKRSFSEAWLNDERFKFWIRKVPFDDSLFHCIVCAKNFSCGP
FT                 ISNIIRHAESAQHKRNIDKDVSSSDNDNVTFEQKPLHPNVFKQQWLEIEQF
FT                 KPWLREVQCDANSFASCTICEKTIAGGLSQIYRHAESKIHKNNCEKFDEIT
FT                 SKSNEDCNIEISELFSSFEERKKFAEIRFAALIAEKNISHENAKIILDFFK
FT                 DVGKDPNVLKSMTMSRQKCTNIITNVLCPVETDRVIENIQNTKFSIFIDES
FT                 TDISSEKWMTFHVRYVHIETLEVHSQLVKLIDIDATDCSAEKLFNAFKYEM
FT                 WKLQIPFSNIVALSCDNASVMVGKHLSFKKKLEEMCNNVLTLSCPCHSASL
FT                 ASHAACAKIPQACEEFLKRITSYITCSPKRWSIFTELSECFEERTHKIVKL
FT                 CNTRWLSHHACIDRLLQSWNTIQHFLNEMIVSEKGTSAENLLRVMQNVDTK
FT                 AYLLFLKYTLHFFNDRERERYICRKFVACHAECRYKSIFAILKIYITFFLN
FT                 VFNAFFQAEETRIHLLQSKSIDFLKEICTNFIKPEILKHLPNITFCKTENH
FT                 KSLNDIFLGSECEEYLHQLIEDGHANMVATVRENCLRFYITAAEEIFKRLP
FT                 VSDTFLSKLQILLPHIALLSTDRETSFHDLSFIAARMGGFDENDLKKEWFA
FT                 LNSDFSVTEKQDLLKLNFDNMWKEILQRQYLNNETKYPNLRSLLNSIRALP
FT                 NSNAAPERIFSLLTDVKTKKRNRLSSTTVNAICVLKSALKARNETALNMKL
FT                 DEKHLSFMSADKLYVTSSVKQKKSFQLHAADDIAGPSSSNMQQ"
XX
SQ   Sequence 4706 BP; 1621 A; 726 C; 778 G; 1580 T; 1 other;
     cagtsatgct agattcaaga cgagagtcac gagagagtca gggagtgggg atgccgcaca        60
     caaggagaaa gcatgtccgt gagagttcgg aagttcggcc gccgtcgggt aatagacgag       120
     gctagcaaat ctagtcctga ctctttcgct ctttattctc acaactagcc tgctcgttcg       180
     gcgattctga tttctgacca tcgaaacgat cgcgctttac gatataggct acgttcgctt       240
     tagcgcttac agttgtaagc attatattaa taacattgac atacaatgtt cgttatattt       300
     aaaaaaaatg gaaattatat ctgttattag aaagagttat atctgtaatt agaaaataat       360
     aaagaataga tataagaaga tagaagatag aaaaattaga aaaataaaaa attttattat       420
     atttttttgt atttttgtat ttttttgtat tttttatatt ttttaatttt attttttatt       480
     atatttttta cacatttatc tttgtaacaa gtgtaatatg tgcacattaa aacaagataa       540
     agtcttgtgc agatgcgatg ttctttatag atattgtata ttatttattt aaacttattg       600
     ctattattat tatttactat tattattagt atttatttaa cttaatgctt taatgcattt       660
     gatgaaacac aagcaattat cctttttatt gttgcatatt agacgaagat ggaccagcaa       720
     tatcgtctgc agcatgtagg tgaaaacttt tcttttgctt taccgaagaa gtaacatata       780
     atttatctgc cgacataaaa gataaatgct tttcatcgag cttcatgttt aaagcagttt       840
     cgtttcttgc ttttaatgtt gacttcaata cacaaatggc atttacagta gtcgacgata       900
     atctgtttcg tttttttgtt ttaacatctg ttaagaggga aaatattctt tccggagctg       960
     catttgaatt tgggagtgct ctagtagaat tcaagagggc tcttaaattg ggatatttgg      1020
     tttcattatt taaatattgt ctttgtaaaa tctccttcca catattatca aaatttaatt      1080
     ttaacaaatc ttgtttctct gttactgaaa aatctgaatt taagacaaac cattctttct      1140
     ttaaatcgtt ttcgtcaaaa ccacccattc ttgcagcaat aaaagaaaga tcatgaaatg      1200
     atgtttctct atcatttctc aataaagctg ggcccatatg tggtagtaat atttcaaaaa      1260
     tatattttac gcaacaggct tttcacatat atttgctttt atttcttata tttgcgacaa      1320
     gtcaatctta cattcaatca atagtattca ttaatatgga gtaattcatt ctcctttccc      1380
     ccctcccccc catcaggtgg tcactcccat aagccacctc atgacggatt atttaacaat      1440
     ggactcgtat tataatatta ttccaagtta cgctgttgct tagagcggac ggaatagaaa      1500
     aagagtcgtc tacgtagtga gtatggattg tcaataaaag taatagtgtt tgcaataatt      1560
     gtaataagtt tagctttaga atagttcagt gtagttagtc agtgtagtta atcagtgcaa      1620
     ttggctacct ctgtttattg gctacctcta tttaatcggt aagttttaca tttttggttt      1680
     tgctatattt ccactttgat atggaatcgt gcgatgcatt gaaaaagaaa gtaaaacgaa      1740
     gcttctcaga agcttggctt aatgatgagc gatttaaatt ttggatacga aaagtacctt      1800
     ttgatgatag tctttttcat tgtatcgtat gcgctaaaaa tttttcgtgt ggtccaatat      1860
     cgaatattat aagacatgca gaatctgcgc aacataaaag aaatattgac aaagatgtat      1920
     catcatctga taatgataac gtaacttttg aacaaaaacc attgcatccg aatgtattta      1980
     agcagcaatg gttagagatc gagcaattta agccatggct acgcgaagtg caatgtgatg      2040
     caaattcatt tgcatcatgt acgatttgcg aaaaaactat tgctggcggt ttatcgcaaa      2100
     tctaccgtca cgccgaatct aaaatacata agaataattg cgaaaagttt gatgaaataa      2160
     caagcaaatc gaatgaagat tgtaacatag aaattagcga actgttttcg tcctttgagg      2220
     agcggaaaaa attcgcggag attcgatttg ctgctttaat cgctgaaaaa aatatttcac      2280
     acgaaaatgc aaaaataata ctcgattttt ttaaagacgt aggcaaagat cctaacgttt      2340
     tgaaaagcat gactatgagt cgacaaaaat gtacgaatat aattacgaac gttttatgtc      2400
     cagttgagac ggatcgtgtg atagaaaata ttcaaaatac aaaattttct atttttatag      2460
     atgaatcaac agatatttct agtgaaaaat ggatgacatt tcacgttcga tacgttcata      2520
     ttgaaacatt agaagttcat tcgcaactag taaaattaat tgatatcgat gcaacagatt      2580
     gcagcgcgga aaaattgttt aatgcattta aatatgaaat gtggaaacta caaatacctt      2640
     tttcaaatat tgttgccttg tcatgcgaca atgcgtccgt tatggtcgga aaacatttat      2700
     ctttcaagaa aaaattggaa gagatgtgca ataatgtatt gacattatca tgtccatgcc      2760
     attctgcttc attagcttcg catgccgcgt gtgctaagat acctcaagct tgtgaggaat      2820
     tcttgaaaag aattacaagc tatataactt gtagtcccaa gcgatggtct attttcaccg      2880
     aattaagtga atgttttgaa gaaaggactc acaaaattgt aaagttatgt aatacacgat      2940
     ggctttctca ccacgcgtgt atcgacagac ttcttcaatc ttggaatacg atacaacatt      3000
     ttttgaatga aatgatcgtg agcgagaaag gtacatctgc agaaaatttg ttgcgtgtca      3060
     tgcagaatgt agatacaaaa gcatatttgc tattcttaaa atatacatta catttttttt      3120
     aaatgtattt aatgcatttt tccaagctga ggaaacgagg atacatctgt tacagtcaaa      3180
     atcaattgat tttttaaaag aaatttgtac aaattttata aaaccagaaa ttttgaaaca      3240
     tttgccaaat ataacatttt gtaagacaga aaatcataaa tctttaaatg atattttttt      3300
     aggatcggag tgcgaagaat atcttcatca attgatagag gatggacacg caaacatggt      3360
     tgcaactgtt cgagagaact gtttgcgatt ttacataact gcagccgaag aaattttcaa      3420
     aagattacca gtaagtgata catttttatc aaaattacaa attcttttac cacatatagc      3480
     tttattgagt actgataggg aaacatcatt tcatgatctt tcttttattg ctgcaagaat      3540
     gggtggtttt gacgaaaacg atttaaagaa agaatggttt gccttaaatt cagatttttc      3600
     agtaacagag aaacaagatt tgttaaaatt aaattttgat aatatgtgga aggagatttt      3660
     acaaagacaa tatttaaata atgaaaccaa atatcccaat ttaagatccc tcttgaattc      3720
     tattagagca ctcccaaatt caaatgcagc tccggaaaga atattttccc tcttaacaga      3780
     tgttaaaaca aaaaaacgaa acagattatc gtcgactact gtaaatgcca tttgtgtatt      3840
     gaagtcagca ttaaaagcaa gaaacgaaac tgctttaaac atgaagctcg atgaaaagca      3900
     tttatctttt atgtcggcag ataaattata tgttacttct tcggtaaagc aaaagaaaag      3960
     ttttcagcta catgctgcag acgatattgc tggtccatct tcgtctaata tgcaacaata      4020
     atatgcaaaa aggataattg cttgtgtttc atcaaatgca ttaaagcatt aagttaaata      4080
     aatactaata ataatagtaa ataataataa tagcaataag tttaaataaa taatatacaa      4140
     tatctataaa gaacatcgca tctgcacaag actttatctt gttttaatgt gcacatatta      4200
     cacttgttac aaagataaat gtgtaaaaaa tataataaaa aataaaatta aaaaatataa      4260
     aaaatacaaa aaaatacaaa aatacaaaaa aatataataa aatttttatt tttctaattt      4320
     ttctatcttc tattatatct attctttatt attttctaat tacagatata actctttcta      4380
     ataacagata taatttccat tttttttaat ataacgaaca ttgtatgtca atgttattga      4440
     tataatgctt acaactgtaa gcgctaaagc gaacgtagcc tatatcgtaa agcgcgatcg      4500
     tttcgatggt cagaagtcag aatcgccgaa cgagcaggct agttgtgaga ataaagagcg      4560
     aaagagtcag gactaggttt gctagcctcg tctattaccc gacgccggcc gaacttccga      4620
     actctcacgg acatgctttc tccttgtgtg cggcatcccc actccctgac tctctcgtga      4680
     ctctcgtctt gaaattagca tcactg                                           4706
//
ID   hAT-2_RPr   repbase;    DNA;    INV; 2589 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2589
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3336-3336 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..2325
FT                 /product="hAT-2_RPr_1p"
FT                 /translation="MNKPSTDQKKIKTYHYHGEWEEDYFFTMMKDKCVCFI
FT                 CNATVALPKKANVERHFLTVHKNYEEDYPRGTALRKAKIQQLKAQLTAQQN
FT                 SFFKCNTNSKTATIASFKVTDTLIKHNKPFHDGEVWKEAFIKAGEVLFQNF
FT                 KNKSEIMASIKNMSLSRNTVMRRTEGISQNLEDILHENINKCIVLSLQFDE
FT                 STDYIGTAQLCIFIRMVFDDMSATEELLTIIPMHERTRGQDIFDLFKNYVA
FT                 RTNFPICKLASITTDGAPAMIGNKSGFVALCKRDDDIPNFMDYHCIIHTQV
FT                 LCSKVLKFDHVMDVAFKIVNSIRSKSLSRRQFRALLKECGDEHSELLLHTD
FT                 VRWLSRATFLTRFRELLPQICSYLQTKGDSYPLLNDEEWLLDLAFFCDVTE
FT                 KLHQLNLQLQGKGKTIIDMISILKSFKEKLNMLAMQLKRRDLKHYQNLADE
FT                 SKNKKNLTYNKYGDIIALLLKEFERRFLTLSELEDIAFFLSCPFNDNIDVE
FT                 NVAQKLNNFLGTTNLAGLEEEIINIKCDINLKSLVSDCNFWKLINKDKYPN
FT                 IWTIVARFNAFFGSTYLCESAFSFMNAIKTKHRSQLTNQHLESCLRIALSS
FT                 YEPNFEKLAALMQCRVSSN"
XX
SQ   Sequence 2589 BP; 907 A; 408 C; 427 G; 847 T; 0 other;
     caggggtggc caacacgtcg accgcggtcg accggtcgac cgcgaaggtt tttaaagtag        60
     cccgcgaagc taaagttgaa caacttgctt tcacctaaat taatgtatga aaaccttaat       120
     tcgattattt attcttacaa taatagcctg tctgtgcaat gtacccatac tgtttgtatt       180
     tatcccgatg aacaatgcta atgaatgtta actttttaaa ttaattgtag ttgcattgca       240
     taagcatata aatggcaatg gcaaaaaatg gcgcaaaatc atgtgccgga cagtaaagtg       300
     atagctcctg acttcaatcc acttgttact ctttgtttgt ccacttgtat ttactttcaa       360
     ttttatttta ttttttttat ttgttcatac agcgaataga agcaggtatg ttagttatta       420
     attattatta agtaattaat taatgtcatt aatatttaac cccattattt tagaatgaat       480
     aaaccaagta cagaccagaa aaaaataaaa acttatcatt atcacggtga atgggaagaa       540
     gattatttct ttactatgat gaaggataaa tgtgtgtgtt ttatttgcaa tgcaacagta       600
     gctttgccta agaaagcaaa cgttgaaaga cattttctaa cagttcacaa aaattatgaa       660
     gaagattatc cacgcggtac tgcattaaga aaggccaaaa tacaacaact gaaggcacaa       720
     ttaactgcgc aacaaaatag ttttttcaaa tgcaacacga actcgaagac tgctacgatt       780
     gcctcattca aagtaactga tactttaatt aaacataata aaccgtttca tgatggggaa       840
     gtatggaagg aggcttttat taaagctggt gaagtgttgt tccaaaattt taaaaataaa       900
     tcggaaataa tggcatccat caaaaatatg tcgttatcgc gaaatacagt tatgcgtaga       960
     acagaaggaa ttagccaaaa tcttgaagat attttacatg aaaacattaa taaatgcatt      1020
     gtgttatcac tacagtttga cgaatctact gactatatcg gcactgcaca attatgtatt      1080
     tttattcgaa tggttttcga tgatatgtcg gccacagaag aattattaac tattattcca      1140
     atgcatgaac gcacaagagg tcaggatatc ttcgatttat ttaaaaatta tgttgcccgt      1200
     acaaattttc caatttgcaa gttggcatca ataaccacag atggggctcc ggcaatgatc      1260
     gggaataaaa gtggcttcgt tgctctgtgt aaacgtgatg atgacattcc aaattttatg      1320
     gattatcatt gtattataca tactcaagtg ctatgttcaa aagtactgaa atttgatcat      1380
     gttatggatg ttgcatttaa aatagtaaat tccataagat ctaaaagttt gtcacgacgt      1440
     cagttccgcg ctttgctgaa agaatgcggc gatgaacaca gtgaactgtt actacatact      1500
     gacgtaagat ggttaagccg tgctacattt ttaacgagat ttagagaact tctgccacaa      1560
     atatgctcat atttacaaac taaaggcgat tcatatccac tattaaatga tgaagaatgg      1620
     cttcttgatc ttgctttttt ctgcgatgtt actgaaaaat tacaccaatt aaatctgcaa      1680
     ctacagggta aaggtaaaac aataatagat atgataagca ttttgaagtc atttaaagag      1740
     aaactaaata tgcttgcaat gcaattaaaa cgtcgtgatt taaaacatta tcaaaatctg      1800
     gctgatgagt ctaaaaataa aaagaatctt acttataaca aatatggcga tattattgca      1860
     ctgcttctaa aagaatttga aagaagattt ctaacattaa gtgaactcga agatattgcc      1920
     ttttttttgt cttgcccatt taatgacaac atcgatgttg aaaatgtagc tcagaaacta      1980
     aacaactttc tcggtactac gaatttagca ggcttagaag aagaaataat aaatattaaa      2040
     tgcgacataa atcttaagtc actggtttca gattgtaatt tttggaaact gataaataaa      2100
     gataaatatc caaatatttg gacaattgtt gcacgtttta atgccttctt tggatcaact      2160
     tatttatgtg aatccgcatt ttcatttatg aatgcgatca aaacaaaaca tcgatcgcaa      2220
     ttaacaaatc aacatttgga atcatgtttg agaattgcct taagttcata tgagccaaat      2280
     tttgaaaaac ttgcggcact tatgcaatgt cgggtttcgt ccaattgaac attgttattc      2340
     gtttgcttat ttacaatgta cctacttttt ttttaagtta ataagtattt catctcaaaa      2400
     aataaaattg ttttctttat ttgtcataat attttttaaa ttgaaattct tgttaattac      2460
     ccgtatttat taaaatatca atgaaaaatt tgaaaaatcc taaaatagtt tgcccatatt      2520
     taaagtcgcc cgtagactaa atttttcaga ataagtagcc cccaagagat aaaagtttgg      2580
     ccacacctg                                                              2589
//
ID   hAT-2_TCas  repbase;    DNA;    INV; 2635 BP.
XX
AC   .
XX
DT   21-NOV-2011 (Rel. 24.09, Created)
DT   21-NOV-2011 (Rel. 24.09, Last updated, Version 1)
XX
DE   hAT DNA transposon from the red flour beetle genome.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-2_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2635
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1709-1709 (2019).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(342..584,1017..1673,2105..2131)
FT                 /product="hAT-2_TCas_1p"
FT                 /note="transposase."
FT                 /translation="VRIKAQCRVCSLVEKWKQDPRMKGWLEPNPENPRKAR
FT                 CSACSCELTAKLSVLLDHAKHQXTKKTPEKPNQVEIYKRCCSNNTEQIIGY
FT                 CSDNASVMVGSKESVKAFLLAENPTIIANSCICHSVHLIAVAAAKMIPDMV
FT                 ENLLQHLSSYFSRSPKRQSILEEFQTFMRTEKLKLPKPSQTRWLALSRCVD
FT                 RVIEMWDTLLELFKAADFEEKDGMSSLIYNNMCNPVIKAYLLFFNYILPVF
FT                 NQFNAFFQSEKMLTHKIYKESLRFIKNIASNFVKVEFLSDNAILNLNVYNP
FT                 HVLLPIEKMLKGYFLS*"
XX
SQ   Sequence 2635 BP; 900 A; 396 C; 447 G; 881 T; 11 other;
     cagtgttgct aaagtagcat agtttcatac actgtagcat tgtagcagca ttatttgttt        60
     tgtakcataa tttctgttgg gaacaattat tttttwggwt ttctttatgt tamactttta       120
     acaaagagta cgtaacctca gscacaacca tgtggttgac atgcgaatgt gcgcaagcgg       180
     acatkctgac tgggattcct gaatcccgcg ctttttgtca tgcttgacac ttgacagtca       240
     attataatct tgaccasttt tttaattctc actatctakt ctgtaagtat taaaagtctt       300
     atagcgtcat tctatatsta attttcaatt gaaatcgcta ggtgagaata aaagcacaat       360
     gtcgcgtttg cagtcttgtt gaaaagtgga aacaggatcc tcgaatgaag gggtggttag       420
     agccaaatcc agaaaacccc cgaaaagcac gatgttctgc ttgcagctgc gaattaacgg       480
     caaaattaag tgttttactt gatcatgcaa aacatcaagm caccaaaaaa acgccagaaa       540
     aaccaaatca agtggaaata tacaagagat gttgcagcaa caacgtacga actctggaaa       600
     taaacaacta atagacgctg ttwcaagaca agcccgttaa tctgtgttgc tcataacgtt       660
     agttttaaga caattgacca tttagttgag gtaaataagc tatgtttctc agattcaaaa       720
     gtagcaaagc aacttcaact gaaacatact aagggctcta tgattgcaaa aaatgtttta       780
     aatgttcaaa ttagagaaaa aattaagaac gaaatatgta aaaatcacat ttcaatactg       840
     atcgacgaaa gcaccgacat tagcaataag aggctgctct gcatattaat taaatatgtc       900
     cacaattgta aaatcgaaac acaactgtta gatttagtcg aaataggtgc cgatcagggt       960
     acagccatgg gattatttag cttgtaaaaa attgtctaaa ttattttaat attaagacag      1020
     aacaaataat tggctactgt tctgacaatg cgagcgttat ggtgggttct aaagaatccg      1080
     tcaaagcttt cttacttgct gaaaacccta ctattatagc aaatagttgt atttgtcata      1140
     gtgttcattt aatagctgtt gctgccgcaa aaatgatacc tgatatggta gaaaatttat      1200
     tacagcattt gagcagctat ttttctagga gccccaaaag gcaatctata ctcgaagaat      1260
     ttcaaacgtt tatgagaaca gaaaaactga aattaccaaa accaagtcag accagatggt      1320
     tagcactctc aagatgtgtg gatcgagtaa ttgaaatgtg ggacacttta ctagaattgt      1380
     ttaaagcagc tgattttgaa gaaaaggatg gaatgtcttc attaatctat aacaatatgt      1440
     gcaatccggt aattaaggcg tatctattat ttttcaacta catattgcca gtattcaatc      1500
     aatttaatgc tttttttcaa tccgaaaaaa tgttaaccca taaaatttat aaagaaagct      1560
     tacgatttat aaaaaatatt gcttcaaact ttgtaaaagt cgagtttctt tcagataatg      1620
     caatcctaaa tttaaacgtt tacaaccccc acgttctttt accaattgaa aaggtaactg      1680
     tcggcccaca aacatctgaa tttatgcaaa attttgacaa aaatttaaaa gaacagttcc      1740
     tgttaaaatg tattcagttc taccaaaaaa caattcatga ttctttcaag cgtttccctt      1800
     tggcaccttt ctttaaaaac ttagaattta ttgacccaaa ctgtgtttta tattcctcta      1860
     ataatattga tatattggaa gttaccaaag tgtttaaatg tagtaatagc gatgaatgtc      1920
     ttcgagaatt taacttatta aaagtacatt tttccgatga ggaaaaaact gacttaatga      1980
     aaaaaaaacg ttttatcatt ttggaactat gttggtaatc ttcaaaatta taatgatgac      2040
     tacatcttta aaaatgttgc aaatttggca ttaaaggtga tcattgtacc ccatggaaat      2100
     gcagatgttg aaagggtatt ttctgtcatg actgacatta aaactaaaaa aagaaatcgg      2160
     ctgtcaactg atatgcttgg tgcaatatta agaattaaaa ttgatttatt taatagtaag      2220
     atttgttgta cagattatgt cttcactgaa gaacattata atttatatac acaaaaaatg      2280
     tatgacttta aaaataagac tgatgataat aatgatgact aagctccaat aacggctgtg      2340
     tctaatgtta cgttaagtac taaagtacct gtgtaactgt gtttgttttt tgtttttgag      2400
     ttgatatttt atttatttgc ccttgattga gaagagttat ttatttaatt tttgtttttt      2460
     tattttgtgt tctatttttg ttttaataaa attttaatta atccataact ttttagcgtt      2520
     ttttgctttt tcatgatgta gagatcgagt ttgtatttga gcagaatttt gtgagcggta      2580
     gcattatttt gtagcgaggt tagcagaatt tggttttaag ttgttggcaa cactg           2635
//
ID   hAT-30N1_DTa repbase;    DNA;    INV; 304 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   16-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-30N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-304
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6225-6225 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 304 BP; 66 A; 72 C; 67 G; 94 T; 5 other;
     caggggtgct cagtcctatg gcacacgagc acaattgttt ttgtaatagc actaagcata        60
     cggcagtgca ctcgcaatgc ttgcctatgc acaccccgag tcctctttgt gtcgctgtcc       120
     gtaatagata agagcgagcc aagccaacaa caaattccat tgaacttttt tttctcctca       180
     actcacagtg caaagtgttg ttgtcttttt catgactgtg tgtgastcgt tactcgcgtg       240
     cgtgtgwttt tcttttaatk gtgttggtaa skgcactgcc gtaaggcagt tttgagcacc       300
     cctg                                                                    304
//
ID   hAT-30N1_LMi repbase;    DNA;    INV; 3679 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.11, Created)
DT   25-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-30N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3679
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3057-3057 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 3679 BP; 1069 A; 713 C; 718 G; 1175 T; 4 other;
     cagtgacgga tctaaggggg ggcaaagggg gcaagctgcc ccgggcgcag agttcagggg        60
     gcgccaaaat gggcaaaagc tttactataa ttacatgaat taaatcaatt ttactgtaag       120
     ctatagtatg aatttcgtta cattagcaat aagtaattgt aagtactttt atttgcattt       180
     ttggccgttt gcaactatta aacacgtaat gtctcggctg cccctgtacc cgtgctattt       240
     cgattacaga agtattaccc aagttatccc gaatgtgctg accacggacc attcaatacg       300
     cttattcagt agtattccgt cacccgcccg cagtggcaga aagacgaact gcgactttct       360
     ttgttgtaat cgtgtcaatg ttctctttgt tgccccttct atgttctact tttgacggat       420
     gcatttgaat ttttttagac agagagttct gactgatgta actctgaagt atcaagtatt       480
     agcttattac ttaggtgtga agtgtgggaa gatgccaaaa aaaaaactat ctggagcggc       540
     attcaggagg aaagcccgag aaaaggaagg ggaagctcag aaatcttctt cgttaatgtc       600
     aacttggttg agaggaaatg tgaaaggtga gttattaggt atataatttt tagttaagcc       660
     agaatcwcgt tgcttcaatt ccaaatgttt tttttttgat cacacttttc acaaatatat       720
     ctgaaatgca gcagttgtat ttactattcg gaatatatta ccattaaaac atttttgcaa       780
     aaatccattt ctcataaagc tacaggcaca ctacatctcc gttttgttga ttttcgtcgt       840
     aaatgtaact taaaaggaac acttgttcac gacttacatc agtcatgaat gttcagtgaa       900
     gtcattacaa acttcacgct ggacctacag tggcaccatc ttttcaatca gatatgggga       960
     ccttaacgat gacttttata aaattgctaa aactgcttcc accgctgctt gacttggcat      1020
     ccgaagccct gcaacattta acaatcagat cacgctaagg ctgtggtcac agtggctccg      1080
     atatcggtgg gttttaccga cgacagacgt ccgcggaaaa cggccgatcg tttcaaatca      1140
     gtactccact atgggcacgg tcacagtgta gccgatctca tcgcccgaac gtagagacat      1200
     cggacgacag tcggtgaaat tcaaatcagt ttgttttctt cggtcaaatc gaccgacgtt      1260
     ctcacatgct agatatggac agtgagwaat tgatatgctt agtgaaagaa agagagagat      1320
     tgtagcaccc agaagastag aaatatcaca atcgggatat aattggaata tatggtctga      1380
     tatgacagtt tattggaaac cccaagttgg ttaaatcctt aatcagaaat tttaggcgta      1440
     aattataacc tcaaaatgtg ttcaatccgg gattgtgcct tatcttaatg ttattgtagt      1500
     ggctctctta cagtgttttg cactgtgata atcgggtatt agctgtccac aaattattct      1560
     tactggttct ggcgttcttt aacaaggtga tgagtctgtt ctatgaaatg gcctgcaaat      1620
     gtggtgcagg cctacgtgtg cttccgcttt tcagtggttt ctgtgttcaa aattattctt      1680
     aatttcacac ttgtctttca caaatatatt gaatgacagt cattgaagtt aaatgtaccg      1740
     taacttcatt tcgttcatca taatcggatg tttctgggtg gcctatagct gtgttcttca      1800
     tggatttaaa tactgagaaa ctgcatccat tatgtatttt tatgcttacc ataacgcatt      1860
     tcgagaattt ttctcgcgtt tagtgcattt gtttacataa atacattggg attttccaag      1920
     tgtgatttta tgcagctctt gcacaggtgt agtctttttg aggttactta atgagggaaa      1980
     tcgtagcata cataataaaa tattggcaac ttttttacat actaaatagt acgtctgtct      2040
     atacttgcag gtattgtgtc tgctccatta aactggaaat cacaacacaa aaatcgtcac      2100
     ttacactggt ttttgtacac aggtaggcct aagtcacgat tattatgttg atattctgag      2160
     taatggaaga ggcacaatac ctttaagcag acagaaaaag ttatgatttc taacattagg      2220
     ataaaacaca cacctcaata tttattctat ccgattttcc gaactttagt agctaaccta      2280
     agagagacaa ctgcagtgca agtgtgtcaa gaaatcacac attgaaacgt cgaaaaagta      2340
     ccgtacttat gtaaactata gaagatgcga ataaatcctc gaaattcgtt gtgataagca      2400
     ataaacttcc ctaactggtg tagtttttca ttatttaaag catggaggtt aactggtgta      2460
     tgtctgcaca acttcaaata aattcagcaa aactgtatta ttgcttgcaa tgacagcacg      2520
     aaatatcaca agtatgtaat agaaatttct ccttttaccg gtacctcaca cattcgtaaa      2580
     gattgtctgt ggagaataac tgaggacagt acacaatcct cgccactttc ttttttccag      2640
     agagttgtag ctcattcgta tgcattcgaa gtctttatta ataacaaaag ctgcattgta      2700
     gcactaattt cgaagcataa aaatgtcggt ggaatccatt gcacccccca tgaattgaaa      2760
     tctaatttac ttcagacaca gaatacagtc aaacctaacc taactttctc ttctaaccag      2820
     accaagtgac aaactatatc ggatgcagtg tgaccacgcc gtcggtcgat gttttcagtc      2880
     gaactcggtc gacggcgtct gacgacggtc tgtcggtgcc actgtgaaca cagcctttta      2940
     acatgacgaa acgcgtaatt ggacatcatg atcaattaca aatttgagac tgctcacaat      3000
     ttaaattatt tacccaatgt tgcctcccca ggcagccatt ataaagtgga ataaaaatta      3060
     cagcttacag ttcttgttgc cgcggtggag aggccgagcg ttccgagggc gcctagctgc      3120
     ggagcgcgcc gctgctcgcc gtcggaggtt cgagtcctcc ctcgggcatg cgtgtatttg      3180
     ttgtccttag cataagttag tttaggtagt ttgtaagcct atgaactgat aaccacagta      3240
     gttaagtccc atakatatac aaacatttgc acagttcttg ttcatactga ttcatttttt      3300
     cagtaaatat ttcaagattt tattctatca cctattatac ttggataatt tgacttttta      3360
     atctgcattt atgttttatt taatactaaa tattttgcat tgtttgtgaa catcttttgg      3420
     taaaattttt tcttaagtta ggcctaggcc tcaaattttt aaattaattt ttatttaata      3480
     tttatcttta ttcatttatg acttcatcat acagtacatt ttctcctgct tgtgaataaa      3540
     ggaactcaat ataaacccag tttttgttgt ttttattaaa tctcatactt cgtcattgcg      3600
     acgacgaagc agctagaggg ggggggggcg ccaaatgaca atcttgcccc gggcgccaaa      3660
     aagcctagat ccgtccctg                                                   3679
//
ID   hAT-30_DTa  repbase;    DNA;    INV; 2307 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-30_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2307
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..2128
FT                 /product="hAT-30_DTa_1p"
FT                 /translation="MSDALANDYFEINFRGERQCLICHKVLLAGRTYFRER
FT                 HFKAVHEEDAVKGLIPNYKDLLMRFYDFDAQQILQFIETNFEEIQEQKNKI
FT                 SSNFEKNYKPALKASYITSLAIAKQCKPFSDGPFIKKACLEILNCFGEIGR
FT                 ISADVIQTVHLSRCSVTRRVEELYNYLDTLLNNKLTLCSYFSIALDESCDI
FT                 SDVSQLILGIRMVDKDFNVTEEIFALIPLMENTRGVDIFNAVTERLQLKDE
FT                 NINKLSAVCTDGAPAMLGKNNGFIGQLIKNNIRVPSFHCAIHQEALSTKGT
FT                 NNIHTMKVVVKIINKIRGGHNSLTHRKLKMFLEECESQYKDLLMFTEVRWL
FT                 SRGKCLERFFELRKEVVEFLDLNMPNFEFLNEIKSEEFNINLAFLTDVTTH
FT                 LNTLNSSLQGKNKNIFNLIGSIEGFKKKTDVFLFDLQLNKLYSFPSLKLVF
FT                 DEFKISTYNFTAFKNHIIALKVNFEKRFTDFDDIKNSMDIFFNPITCNILK
FT                 QNPEVQLELCDLQCDLEMKTSNLKGIDFWKLEGAKKYPSIRSSILRMYSMF
FT                 GSTYICESAFSTLKLIKNNHRSRITNNHLEALLKLSTTKININIDTFLDQM
FT                 "
XX
SQ   Sequence 2307 BP; 762 A; 376 C; 420 G; 749 T; 0 other;
     caggggtgct cagtcctatg gcacacgagc acaattgttt ttgtaatagc actatgcata        60
     cggcagtgca ctcgcaatgc ttgcctatgc actaaccgag tcctctttgt gtcgctctcc       120
     gtaagagata agagcgagcc aagccaacaa caaattccat tgaacttttt tttctcctca       180
     actcacaatg caaagtgttg ttgtcttgtt ctcggctcta cactgacact tttttttgct       240
     gcgtttttga tagaatttga tttaagtttg attttagttt attgtggacc agcgacgcgt       300
     gcatttcatt ggatttcttt ggcatgtcgt taaaatgagt gatgcattgg caaatgatta       360
     ctttgaaatt aattttagag gtgaaagaca gtgcttaatt tgccacaaag ttttgttggc       420
     tggaagaact tattttcgcg aaaggcattt taaggctgtg catgaagagg atgcagtaaa       480
     aggcttaatt ccaaattata aagacctttt aatgcgattt tatgactttg atgcgcaaca       540
     aattcttcaa tttattgaaa ctaatttcga agaaatacag gagcaaaaaa ataaaatatc       600
     gtcaaatttc gagaaaaatt ataaaccggc attaaaagcg tcatacataa ctagcttagc       660
     tattgctaaa cagtgcaaac cattttccga tggcccgttc attaagaagg catgcctgga       720
     aattttaaat tgttttggag aaattggcag aatatcagct gatgtaatcc agactgttca       780
     tttgtcgaga tgttcggtaa ctcgcagagt tgaagaactt tacaattatt tggatacgtt       840
     gttaaacaac aaattgacgc tttgctctta tttttccatc gctttggatg agtcttgcga       900
     catttctgac gtcagtcaat taatactagg aattcgaatg gttgacaagg atttcaatgt       960
     cactgaagag attttcgcac ttattccact tatggaaaat acaaggggag tcgatatttt      1020
     taatgcggta accgaaaggt tacaattaaa agatgaaaat atcaacaaac tatccgcagt      1080
     atgcacagat ggtgcacctg ctatgctggg gaaaaataat ggctttattg ggcaattaat      1140
     aaaaaataat attcgtgtgc catcctttca ttgtgccatt catcaggagg ccttgagtac      1200
     caaagggaca aataatattc acacaatgaa agttgtggta aaaattatca acaaaatacg      1260
     aggaggtcat aattctttaa cccaccgcaa acttaaaatg tttcttgagg aatgcgaaag      1320
     tcaatataag gacctactta tgttcacgga ggtgagatgg cttagtcggg gaaaatgtct      1380
     tgaacgattt tttgaattac gtaaggaggt ggtggaattt ctggatctca atatgccgaa      1440
     ctttgaattt ttaaatgaaa taaagtcgga agaattcaat attaaccttg cgtttttgac      1500
     tgatgttaca acacacctca atacccttaa cagctctctt caaggcaaaa ataagaacat      1560
     atttaattta atcggttcca ttgaaggatt taaaaaaaaa acagacgtat ttctctttga      1620
     tttgcaatta aacaaattat attcgtttcc gtccttaaaa ttagtttttg atgaattcaa      1680
     aatttctacc tataatttca cagcatttaa aaaccatata attgctttaa aagttaattt      1740
     tgaaaaaaga tttaccgatt tcgacgatat caaaaatagt atggatattt tttttaatcc      1800
     aataacctgc aacatactta aacaaaatcc tgaagttcaa ttggaattat gtgacctaca      1860
     atgtgacttg gaaatgaaga caagcaattt aaaaggaatt gatttctgga aattggaagg      1920
     tgccaaaaaa tacccgtcta tacggagcag catattgagg atgtattcga tgttcggaag      1980
     cacatatatt tgcgaaagtg ctttttcaac tttaaaatta attaaaaaca atcatcgaag      2040
     ccgtataacc aataatcatc tggaggcatt attaaaatta tctacaacta aaataaatat      2100
     taatattgat acttttctag atcaaatgta aatttttaag tgaaataacc aaatgaagta      2160
     accaaaatta ttatttttca gaatttaact tttttttctc ccagtgttca ttttgtagca      2220
     ataaacggcg tcgatacatg tgtgcgtgtg ttttcttttg tttgtgttgg taagtgcact      2280
     gccgtaaggc cgttttgagc acccctg                                          2307
//
ID   hAT-30_LMi  repbase;    DNA;    INV; 9851 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.11, Created)
DT   25-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-9851
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3058-3058 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(6640..6771,6710..7771,7738..8934)
FT                 /product="hAT-30_LMi_1p"
FT                 /translation="MPGTSNTATFTHDSSTSQQKSLLDFKDPGTWPESFFG
FT                 CSEMPRCILRIQGPGQSPFSDAARCLVVKKLLSEEKTQPDLSDSLREGRKL
FT                 SKDWFYKMLPNGQKVCRSWLAYSKSKNALFCVPCKLFHENISEAKLSRMAX
FT                 NGLTQWKKLNEKIPEHENSLSHKKRFCSWKTLEASLNKGGIDKELQQQISE
FT                 EEKHWKSVLTVIVDVILHLAKQGSPFRGSDESLDFGDPRCGKFLNTIDLLS
FT                 RYHPTLREHIRRHKKGQLSYFSHDIQDEFLEIIGSKIREQIITDIKEAKYF
FT                 SIMFDSTPDVSHCEQMSQILRYVKFNESGAEICESFIDFLTISDKTGQALS
FT                 EIILQKIEKDGLDFKNCRGQSYDNGANMAGKYKGVQSRLQQENKLAYFVPL
FT                 LHTHVSILRAVAAHSLNLVGVNAASASHDAESYFGIINCLYLFFASSTNRW
FT                 EIMLKYVPVSLKLQSSTRWSTKREAVAVVHKHLEEVIKALNELISSATSRP
FT                 ETKTEAKNLFKNVSTFEFITASCFWFKQLTRIDIVNKILQKQDITTDQSVN
FT                 HINQLIQEFQETRTNTTVVTDIISEAKAIAEKLNLDPQFKELRKRKRKRMF
FT                 DEDCEDESWDWSAEKRFHNTIAETMDHIIHQLRNRFHALQNINNLFGFLHG
FT                 TQLQTLKDDDMKNHAMHLADIYNNDLNQDELITELQSFKYHALNLIPTMKT
FT                 ATPAKILSLICQNGLQDAYPNVTTALRIFVTMPVSVSTNERSFSKLKQIKT
FT                 YLRNRTAQQRLTDLSIISIEHQLASNISFDAIINTFAERKARKIKF"
XX
SQ   Sequence 9851 BP; 3028 A; 1903 C; 1960 G; 2942 T; 18 other;
     cagtgacgga tctagggggg agcaaggggg gcaagctgcc cccgatgcag agttcagggg        60
     gcgccaaaat gggcaaaagc tttgctaatt atggtttttg aagagagaat tacgagaatt       120
     aaatcaaatt cactgtaagc tacagtatga atttcgttgc attagcaata agtagtttta       180
     tttgcattcc tggccgtttg ttactattaa atacatagtg tcttagcagc ccctgcaccc       240
     ctgcatgaaa ctatttctag ctgttaaact ccagctgcgc cgagttcgac ctgcttggtg       300
     caagggcgtc ttgtgcatcc atgatgatga aatgataatg acaactcaac agccggctgc       360
     agtagccaag cgatctatgg cgtgccagtc acggtctgca cggacgctac ggtcagaggt       420
     tcgaacctcc ctcgggcatg ggtgtatgtg ttgtccttag cgtaatttag gttaatttag       480
     tcagtaatta gtgtgtaagt ctagcgactg atgaccgcaa ggtttggtag cataagacct       540
     cgcgcacatt tgaacaacac aacacccagt ccccgagtgg agaaaatctc catcctgaac       600
     aggaatcgaa cccaggaccc ctgtgtggca atctaccatg ctgtccactg ttttaattta       660
     ttttttaata tatatagatc tatgcatcgc ggtcgttggt tccatttggt cactgaatat       720
     tggactcagc tcttttatta cagagagcgt ttagcctcct gaccgggcgc gctgaggcac       780
     ggctcccggc agtaaactac ggagatggtc attcaataat gttgtgatgc ctgcggcgca       840
     gtggcagaaa gacgaactgc tactttcttt gtcgtaatgg tgtcagtgtt ttctttgttg       900
     gcccttctat gttttacttt tgacaaatgc atttgaagtg ttttagattg aaagagttct       960
     gattgatgta agtcagacaa taactatata ttattagcct attacttacg tgttaagtgt      1020
     gggaaaatgc caaaaaaact atcagaagtg gcattcagga ggaaagcccg agaaaaggaa      1080
     gaggaagctc agaaatcttc ttcgttaatg tcaacttggt tgagaggaaa tgtggaaggt      1140
     gagttattag ataataattg aaatatttta tccatttcag caaatgttaa ggctttaatt      1200
     cataaaatgc agcaaccact tcatgtaaca atttacttgc gacgaccggt ttcgggcgct      1260
     tgagtgccct tcttctggtc tacttgtatt ttagcattgt agcttaagag atgtacatgc      1320
     tacatgctag caggagagtg aacgctaagt gcagagattt gcaagaaatc catacatttc      1380
     atacatcccc taagtgcaga gattatgcaa gaattctata catttcttgc ataatctctg      1440
     cacttagcat tcactctcct gctaccatgt acattatatt aagctacaat ctaaaataga      1500
     cgagaagaaa ggcatcaaga gcccgaaacc cgtagttgga aataaattat tacgttcaag      1560
     cgttgtgcat tttatgaatt aaaagacata atttttagtt aagccagaat catgtttttc      1620
     actcgtcttt tgtttagccc aaagcgtgac gtagtcattc ttttgtcaaa tatatttgaa      1680
     atgcagcagt tgtatttagt attcgagaat atattaccgt taaaacatct ttgcaaaaat      1740
     ccatttatca taaagctaga ggcaactact tctccgtttt gtttattttc gatcgtaaat      1800
     gttagttata aagaacactt gttcacgact tacatcatca tgaatgttca ttgaagttat      1860
     tacaaaatga cttccattaa aaaaactcca tacttttaag tcgtccccac caactttttt      1920
     taaatgttga agctcgacca tcttcgattt tttataaatt ttaccaggat attttaaagg      1980
     tcttaaagga tgttacacaa aattttaggc cgatatctaa agtatttgag gctccagggg      2040
     ccagcttttg tggaaggggg tcatgccttg cgcgtgtgcc tggggaactt ggccaagttt      2100
     gcgctttcat tcctcagaag cgaagagtac tttacacttt caaatctggg tttctatatc      2160
     agttttgtgc agatgtgcag agaattgaaa aataacatta tcatgggtag cgattaaggg      2220
     tttttttttc aattgttttt caaagacagg cgtaaatttt gtgacccgaa atttaaggtc      2280
     acttactaaa cgactaatcc gttcacacct tgatattcca cctttgtgta caggttctgc      2340
     ctggtaagcc agtgtaacaa tggtaaaaat gtgtcttcta tagtttttga gtaatgatcc      2400
     agaaagttgc ctccaaaaaa tcagtatgca aaatatgacc aagtttggag gccaatatat      2460
     ttacataggt ctcttctgat tttaatttta aaatgcgcta ttaggaagtg cagctttcgc      2520
     tttaatagaa tattgaacac aacgtgaatg tgcaattatc acgtcctccc actgggcgaa      2580
     acagtttatt gctctttcgg aacgcccggc taacaaaacg gcggtcccac tcagttaaaa      2640
     cctttttctg gcctgtcctc ggcagtttgc agccttttat acattaataa tagtggagtt      2700
     taactatgga tgttgcttca acaaatttat ttccttgcat tattagcaag gaaactactt      2760
     cacagtgcca atcaacaagt atgcctaata aagtcctgac gtttttcaaa gaactcagtt      2820
     ccactattaa ttaatgtaaa aaaggcaatc tatatataca gtatgaacga gaagctgaca      2880
     gctgtagaag aatgcattgc tacgcctgtt gaggtaataa gattcacttc ttacctaagg      2940
     atcacgaagg ttgcacaatc aatcccctgc agtccttaaa acggctcggc gcggtacaac      3000
     caccttggca caaackwagc agtgacgacg gcacaagggt ggcggcccga aaacgcagcg      3060
     gcgcggagtc kaacgcggat cgacgaaaac acgatgggta cacagctgtg tcgcctsgtg      3120
     cgcgtccacc acgaaagaaa gctscaaact gccgagaaca ggccggaaaa agcttttacc      3180
     tgggcgggac ctgtcccttt gtcggcgggt ggcgccggcg ccccgagagc cataaactgt      3240
     ttcgcccagt gggcggaggc aggaagmggc cacgcsgaaa ctgcacattc wcattgtgct      3300
     caatattcta ktaaagcsaa agctaaactt cctaatgcat ttkaaattaa aatcagagga      3360
     gacctataca aatgtattgg cctccaaact tggtcgtatt tttatactga ttttttggag      3420
     gcaactttct ggatcattat ctcaaaaact atagaagaca tttttaccat tgttacaccg      3480
     scttaccagg cagaatctct acacaaaggc gaaatatsaa ggtgtacaam ggattagtca      3540
     tttagtaagg gactgcsaaa gtcggccttg cattttgagc cacgtaattt tcgcctgact      3600
     ttaaaaacaa ttaaaaaaga acacataatc gctacccatg aaatgttatt tttccattct      3660
     ctgcactaaa ctaatcgaga aacccagatt tgaaaatgcg aagtatctta gctgttgagg      3720
     aatgaaagcg caaacttgtc caaaagttcc tcaggcacac gcgcaacgca tgacaccctt      3780
     acacaaaagc ggccctggag cctcgaccac tttagatatc agcctaaatt ttttataaca      3840
     tcctttaaga cccttaacaa cattctggta aaatttgaaa aaattgaaga tggtcgagct      3900
     tccagccctt gctgatttga catggagtgg cacaatatcg tttttattaa tattttaagc      3960
     ctcgcactta tctacctacc attaacaaat gtgcatgaaa aaaagagtaa agaaaatgat      4020
     gccgtagcct acccgtccgt ccttactaga gcagtgcagt aggaaggcgg cgttctggcg      4080
     acagagaaac ttgacgcagc gagatcgccg ctcctcttct ctctggctgt cagttgaccg      4140
     tatcagctga ctgggccgct acggccgcgc gctccgacag tgttaatcgg tcgagtttca      4200
     ccattcaaat gtatgcactc cgcacccagt caagaactct acacacttca gctagacatt      4260
     ctgatatatc gatttagata tcgtctatat gcattcaaaa ttaatgcagt tttcatgctg      4320
     ttcgttttat ttaggcgaaa aattgttaac ggtatgatga ttttaaacat atcttgtcga      4380
     ctgcagcaac tgtaggttta caaatatttg ataaaattca gcccaaccag ttgcaaaatt      4440
     tgataaaata ccttgatcta gatttcggcg ccaactaagg gcgccttcat cagaagaata      4500
     atgttttaat ttttattctt ccgatgaagg cgcccttagt tggcgccgaa atctagatca      4560
     aggtatttta tcaaattttg catctggttg ggctgaattt tgtcaaatat ttttaatkgt      4620
     atttttaatg ctgtatagag caactggaaa tttttaaggt gtcaataaat atttatttat      4680
     actcgtagtt gctgcctaga ttaatgtgca tatgccactt tggtgcgatc acacgaagat      4740
     gcaattaaat aattttgatt ccaaaagtga aaatactgtg ttcaagcgaa tataatagca      4800
     atgagaacaa aattcagtga caatattata aaaattataa taactggact acccaagcca      4860
     ggctcttgaa aatatgaggg atagcaacaa actgccattg attaatttat agcaatactg      4920
     aaatatgtat gagtgaaaat ataaagtgta gtcactctgt attagtcaag agtgacgtta      4980
     acacgttgac tgccagtgtg gccgccggcg gccacagcag gcggctctgg cgcgcctctg      5040
     acgtcatcgc ggcaatcaac gtgttaaagt aatgtatttg gaaataacgc tacctgccga      5100
     ttatataaat tatacgtaag tccctataaa ctattcgtga aagttttata cttgatgttt      5160
     gcctgaaggg cctaagcgaa aaatttaggt ccactcagtg ctgcattccc gtccaaaatg      5220
     tacctaaact gaagtgcgca cctgtcacaa cgttcattca ggcgtataaa tgaatactac      5280
     gagcaccgtg acttttctct ggaaagcttc aaaacttttc agtcatttac tgtgaaacca      5340
     attaggttct gaatatttga aaccaattgt ttattcagcg tttgttaaat tgtatagacc      5400
     tattacatgt atttcaacac tgcattgtac ttttatcttc gaaaagtata aaggtttggt      5460
     attagtttga ttatgaacgt gtgatttttt ccttattatc tatgaataaa aatgtgctca      5520
     tcagtcaaca ccatgtattt tactttatgc ttatttcgtc tgatgagttc ttttcagagc      5580
     ctattttaga ttttatttgg cctacatgag gtaatgaaag tgcctattta agcgtctaaa      5640
     atgctctttt tccgaactaa taatcctcgg tctagtgacc actgcttccc tggcgattta      5700
     agagmcgcta gcccactctt gtgacggacg cgttcgcttc atagaatgtc cgcagtccca      5760
     cgccgcaagc ctctgccgcc ctgcctgtat gttggcaacg ttggggagag caccatgtgg      5820
     cagcaagtcg tttgctttgc ctaccttctt aagtagttaa acagagcttg cttgactgcg      5880
     taaaacttgc cacttttctg atccgtcagc cataacgaac actttgcaaa gtaaataagc      5940
     ttcaatatac gtccactgga gaaaaaatca cgactatacg ttcaaagcac actcggcacg      6000
     gcgcgaaacg gcgaatgcct ctattggctg ggtcgtcacg gggtccactg gctcttgtta      6060
     ctgcgcatcg ccccgccacc cgtcttccta cctgcacaca gctctaagta atgtccttaa      6120
     ccttagcaat gccagcgcag tttacgtggt gcgtgttacc aaaaggtggg ggtactttat      6180
     gaaaaaaagc caattattga gcacttttct gacaaatatt ccttttaaag agctactaag      6240
     agtgacctta atgtttaggt tgtgtttgaa tgaaaaattt aaaacatatg gaatgtgata      6300
     gaacactatt aaaaacaatg catttctttt aatagttcta aaatataggt tacaatattt      6360
     tcagaaggtt ggcataaagt atcccctttc ccttttgtac tgcggaggtt aagtatgcat      6420
     atcatgcttc ttgacctata ggtggtcaaa tggaagttga gcttcggttg tatttttatt      6480
     tcagatgaaa gcggagctac aaaggaagtt agtgggcgta ttttcgaagg cgtatctaca      6540
     gacgagcctc aagtacttcc ccacgattca aagaaggagg aagcggaacc aatacattct      6600
     caagaatgcg atttagggtc tacttctaca acagagggaa tgccgggaac ttcaaatacg      6660
     gctacattta ctcatgattc ctctacaagt caacaaaaat cactgttaga ttttaaggat      6720
     ccagggacct ggccagagtc ctttttcgga tgcagcgaga tgcctcgttg ttaaaaaact      6780
     gttaagcgaa gaaaaaactc aaccagactt aagtgattct cttagagagg gaagaaaatt      6840
     gtcaaaagac tggttttata aaatgcttcc taatggacaa aaggtgtgcc gttcttggtt      6900
     agcctacagt aaatcaaaaa atgctttgtt ttgcgtacca tgcaaactat ttcacgagaa      6960
     catatccgag gcaaaacttt ctcgtatggc tamgaatggt ctcactcagt ggaaaaaatt      7020
     aaatgaaaag attccagagc acgaaaactc attaagccac aaaaaacggt tttgctcttg      7080
     gaaaacatta gaggcatctc taaataaagg tggtattgac aaagagttac aacaacaaat      7140
     atcggaggag gagaagcact ggaaatcggt tttaactgtc attgttgatg tgattctgca      7200
     tttggcaaaa cagggcagtc cctttagagg ttcagatgaa agtcttgatt ttggtgatcc      7260
     aagatgtggg aagtttttaa acaccattga cttattgtct cgctaccacc ccacactgag      7320
     agagcacata aggcgccaca agaaaggtca actcagctac ttctctcatg acatccaaga      7380
     tgaattttta gaaataattg gatccaaaat aagggaacaa ataatcactg atattaaaga      7440
     agcaaaatat ttttctatca tgtttgattc cactcctgat gtaagtcatt gtgagcagat      7500
     gtcgcaaatt ttaagatacg tgaaattcaa tgaaagtggt gcagagatat gtgaaagttt      7560
     tattgacttt ttaacgatta gtgacaagac agggcaggca ctttctgaaa taattttgca      7620
     gaaaattgaa aaagatgggt tagattttaa aaattgtcga ggccaatcct acgacaatgg      7680
     tgctaatatg gctggaaagt acaaaggtgt tcagtctcgt ttacaacaag aaaataagtt      7740
     agcatacttc gtgccgttgc tgcacactca ttaaatttgg ttggagtgaa tgctgctagt      7800
     gcttcgcacg atgcagaatc ttattttgga ataataaact gcctatattt attctttgca      7860
     tcatccacta acagatggga gattatgttg aagtatgtgc ctgtatctct aaagctacag      7920
     agttctacga gatggtcaac aaagagggaa gctgtagctg tcgtgcacaa acatctcgaa      7980
     gaggtcatca aggctttaaa tgaacttata tctagtgcga catccaggcc tgagaccaaa      8040
     acagaggcta aaaatctttt taaaaatgtc agcacttttg aatttatcac agcttcttgt      8100
     ttttggttca agcagctaac acgaatcgat attgtaaaca aaattttaca gaaacaagat      8160
     atcaccactg accaatctgt taatcatata aatcaactta tccaggagtt tcaggaaact      8220
     agaacaaaca caacagtagt aacagatatc atctcagaag ccaaggccat agctgaaaag      8280
     cttaatttgg atcctcaatt taaagagttg cggaaacgaa aaaggaagag gatgttcgac      8340
     gaagattgtg aagacgaaag ctgggattgg tcagctgaaa aaaggttcca taacacgatc      8400
     gcagaaacaa tggatcatat tattcatcaa ctgaggaaca ggtttcatgc attgcaaaat      8460
     ataaacaatt tgtttggatt tttacacgga actcagctgc agacattaaa ggatgatgat      8520
     atgaaaaacc acgcaatgca cttagctgat atatataata atgaccttaa tcaggatgaa      8580
     ttgataacag aactgcagag ttttaaatat catgcactta atttaatacc aaccatgaaa      8640
     acagcaactc ctgcaaaaat tttgagctta atttgccaaa atggattaca ggatgcatat      8700
     ccaaatgtga caacggcact taggattttt gttacgatgc ctgtttcagt ttcaacaaac      8760
     gaaaggagtt tcagtaaatt gaaacaaata aaaacatatt taagaaacag aacagcacaa      8820
     cagcgcctca cagacttgag tataatcagc attgaacacc aattagcgtc taatatctca      8880
     tttgatgcta ttattaatac ttttgccgaa aggaaagctc gtaagattaa gttttaggtt      8940
     aaattattca aatagcagtc tctaatgtaa atttgtaata gattattatg tccaaatacg      9000
     cgtttcgccc agttagcgta tgatcagatt ggttaaatgt tgcagatata atgatatggg      9060
     gcttcgaatg ctaagtctag cagtggtgga agcagtttta gcattttata aaagttatcg      9120
     ttcaggtctc catatcagat agaagagctg gtgcctcagt aggtccacgt ttgacttacc      9180
     ttggcaccag ctattctatc tgatatgggg acctgaacga taacttttat aaaatgctaa      9240
     aacccaccac tgctagactt ggcatccgaa gtcctataga taatatctgc aacatttaac      9300
     caatctgatc atacgctaac tgggcgaaac gcgtatttgg acatattaat caattaaaaa      9360
     cttgagactg ctcacaattt aaattgttta ttcattgtta cctttccagt caaccattat      9420
     aaagtggaat aaaaattaca ggttgcagtt cttgttcata ctcattcatt ttttcagtaa      9480
     atatatcaac attttattct atcacgtatt atacttgaaa aatttgactt tttaaatcta      9540
     aatttatttt atattcaata cttaatattt tgctttgttt gtgaacgtct attggtaaaa      9600
     ttgtttctta agttaggcct aggcctctaa tttttaaatt tattttttta tttacatttt      9660
     tatctgtgtt catttatgac ttcattcata cattgtctcc tgtttgtgaa taaaacaaac      9720
     tcaatctaaa cccagttttt attattttta ttaaatctca tacttcgtca ttgggacgat      9780
     gaagttgggg gggggggggg cgccaaatca caatcttgcc ccgggcgcca aagggcctag      9840
     atgtgtctct g                                                           9851
//
ID   hAT-31N1_LMi repbase;    DNA;    INV; 1956 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-31N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1956
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3317-3317 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1956 BP; 566 A; 420 C; 431 G; 536 T; 3 other;
     tagagatggg taggtccgga tggaaacggt tccttggacc cgcatcagct gcgctagtga        60
     tggatgtaaa tccgagtgca ggtcggacac gcatcctcgg acacgcatcg gttgtgggtc       120
     caggccagca aacaggtcag gcgcggccgg agttggacac gcagtggcgg agtggaaggg       180
     agacagttgt aaagcccacg ccggatgtgg agcccgccat aaacacagca gggtggtcag       240
     gccgaggcga cctgctgggg tggctgggcg gctacctgct cgccgaattc cgtcagctct       300
     gtgtgacgct ggcctggcag tgtctgcaca acaggcgagg ctggcacaca ggcgtatttt       360
     ttctgtccga gactgtactg gccttgggct gcatcctcta acaggwgtcg cattactaac       420
     agatgtttgg ctgaaacagt tcaacaaaca tagtgatttt gttcgatttc ctgaatttgt       480
     gttgccattc actgcacaac tgttcaacgg aagattatta ttgtaaggtt attcccaata       540
     acastaactc ttgattgtgc ccccccaaaa aagttggtag taagatttga gttcacggtt       600
     attgtgtatt ttatggtatg gttttaaagc gtgccaacaa ggaatggaca atgcactcat       660
     gtctgtcaag caaacattgc aagtcgattt tgaccattgc atacgatgtt atggacacta       720
     atcttggtcc agtgatttat ttaccgaacg aattaagctt tttagtgata cacacatgta       780
     tgtgtgcccg tgctggccag gtgtcataka acagtttttt cttgttctcg tagatttcat       840
     tatcccacca ccgaagaaca gtgaagtttg gtatcaattt acagtccaag ataataaagc       900
     taaatgccga tattgctgtc tggatctttc gtacaatcca agaactcgaa caggaaatct       960
     cgtcagacat atgaagagga aaaacacttg aacacgtgaa acacttgaaa taaatttacc      1020
     tagcaatgaa gaatttacca atagcagtag caattctaat aaaattaatc acaattcttt      1080
     acctgaatct gtgccatcca gttcagaaca aattttaccg tccacttcag cattcaagcc      1140
     ctttatcaga tcaaatttca ttacaattca tcgttccaag caaattgata atagtgacaa      1200
     aaatgattgt aaaagaatac catccattta aaattgtaga agatccagag ttccgaaaac      1260
     taatgaattt actttgtcca tcatataaga taccaactag aaaatcagta tcttgcagtt      1320
     tgttgcctgc catccacaac gaattaaaag aggaaactcg aaatttattg acgggaggaa      1380
     cagatgtgtc ttttaactgc tgatggatgg gcgtcacaaa ataatcagaa tcatttctat      1440
     taaaagacag ctcacttcat tgatgaaaac acagtcttgc aaaatgtttt acagtaagag      1500
     cttagttcac aaagatttta gttttctaca aataattaga aaaatactaa tgtgatctgg      1560
     gtgacatgta tagcaaatga tgactgtgat tttataatgc gacagtgttc gtgattttct      1620
     ggcaataaaa cattcttatc acagttaact tggtctatct tttacatcat tactatatat      1680
     taataaattt ctacatattc ctgtgtaacg caactgcaat ccttctcggt tagacaagat      1740
     tcgctcgata gatacgcttc ggccgccggc tgtgcggctg taccagtgca ggtccagtgg      1800
     cggcggatcc acttgacaga cacggtccgt ccggccggcc ggctgcagag ccggacccat      1860
     atgggtccag cggacacgga acctggatgc aggtccgcag agctcgatgc agatccggac      1920
     ccgactcctt taaaatctcg gacctaccca tctcta                                1956
//
ID   hAT-31_DTa  repbase;    DNA;    INV; 1731 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   14-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-31_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1731
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (14-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence; 5'-end truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..1305
FT                 /product="hAT-31_DTa_1p"
FT                 /translation="MGSNFVVTDQGSNVKKAINLGYLNNLFCLGHGLHNLL
FT                 NVDGYNSVSDIGNLVVKCKNIVSALRFKTHVLRCQADALQNEVLSSIENLE
FT                 ELLASEDNDWVNYDEDFGPLDDVPLKTYKNINNPNDLHNSLVGKRNVSLKN
FT                 SVPTRWHSVLAMLDSLGCQRTTINKLLTSSNKNHLILSEAEAQLLYKLTEF
FT                 LKKFKDAANILSGDKYLSIRVALLIRTEIVSILNESTNNEPLALTSMKNNI
FT                 KTKLNYRFPLSDILVCASLLDPRFSSSDCVLDYCDEQNLNKTEFLLKMYKE
FT                 LLGDPQQDIAQQDSSRDGSSACKILKLAQRHSKSTKNSNLEAECHLLLSLS
FT                 SSQDVLTFWTEKAPAMPLLSKLAQKVLCIPATSTPSERVFSIAGLTVSQKR
FT                 SQLSPHNVNKIIFIHDNYETCKESLS"
XX
SQ   Sequence 1731 BP; 575 A; 302 C; 320 G; 534 T; 0 other;
     actctaacag agctcgaaga ggttactgaa atgtaacatt tggaaatggg atcaaatttt        60
     gtggtaaccg accaaggaag caatgttaaa aaagctatta atttgggcta tttaaacaac       120
     ctcttctgtc ttggacatgg tcttcacaat ttgcttaatg tagatggtta caattccgtg       180
     tcggatattg ggaatttagt tgtgaagtgc aaaaatattg tgagtgcttt acgatttaaa       240
     acacatgtat taagatgcca agctgacgct cttcaaaatg aggttttgtc aagcatcgaa       300
     aatttggaag aactcctcgc atctgaagat aatgattggg ttaactatga tgaagatttt       360
     ggaccgctag atgatgttcc cttgaagaca tataaaaaca ttaacaaccc taatgatttg       420
     cataacagtt tggtaggcaa gagaaatgtt tcgctaaaga actcggttcc cactagatgg       480
     cacagcgttt tagcaatgct agacagtctc gggtgtcagc gaacaacaat aaataaattg       540
     ctcacaagca gcaataagaa tcatttgata ctatccgagg ctgaagcaca gcttttatac       600
     aaactaacag aattcttaaa aaagtttaaa gacgctgcta acattctgtc tggagataaa       660
     tatctatcaa taagggtggc cttattaatt cgtacggaaa tcgtatcaat attaaatgaa       720
     agcacaaaca acgagccact tgctttgact tcgatgaaaa acaatataaa aactaaattg       780
     aattatagat ttcctttatc ggatattcta gtctgcgcat cattattaga tccgcgattc       840
     agttcttcgg attgtgtgct tgactattgt gatgaacaaa atttaaataa aacggagttt       900
     ttgttaaaaa tgtataagga gttacttggc gatccacaac aagatattgc tcagcaggat       960
     agttccagag atggttcatc agcatgcaaa attttaaagc tagctcaacg acactcaaaa      1020
     agtacaaaaa acagcaattt agaagctgaa tgccacctac ttttaagttt gtcctcatcc      1080
     caagacgttt taacattttg gactgaaaag gcacctgcaa tgccattgtt atcgaagctg      1140
     gcacagaagg tgttgtgtat tccggcaacg agcacaccta gtgagcgagt tttttcgatt      1200
     gctggtctta ccgtttctca aaaacgatcg cagctcagtc ctcataatgt taataaaatt      1260
     atatttatac atgataatta cgaaacatgc aaagaaagtt taagttaggt ttttttattc      1320
     atatttttta gtttaaaaac atgcaaagaa agattaagtt atgtttttgt ttattcatat      1380
     ttttaagttt aaaaatttag atattgatct cgcagaagaa ttctgtttaa ttttttttaa      1440
     ataatgtagg gaaaatgtaa tcaatgatct ctcagaaaaa gaagtcttaa tttgttttta      1500
     atttttttat gtttgtttaa ttatgttaaa aaagaaaaat aaataaaaat ttgaagaaat      1560
     tgaggaaaaa acaaattttg tttttactgc gtacgccgcc ggccgccgac aaattcgacg      1620
     gcttagctgc cgccgccgcc gccgttttca ttttaactct acgccgccgc cgccggcttt      1680
     tcttgacccc cacgccgccg ccgacgacca agccatcggc gtaaacctct a               1731
//
ID   hAT-31_LMi  repbase;    DNA;    INV; 3309 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3309
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3318-3318 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..2713
FT                 /product="hAT-31_LMi_1p"
FT                 /translation="MCVCLCWLGGLEQFFLVFVDFIMPPPKNSEVWNHFTV
FT                 QDNKAKCRYCCLDLSYNPRTGTGNLVRHMKRKHHNIPLHRETLQINLPSNE
FT                 EFTNISSNYNETIHNSLSESVPSSSEQVLPSTSAVFNPCSRSNLITNYTTV
FT                 QDPASYRSKQIDNQLLKMIVKEYHPFKIVEDPEFRKLLNLLCPAYKIPTRK
FT                 TVSCSLLPAIHNELKEETRKLLMRGTDVSLTADGWTSQNNQNHFYAITAHF
FT                 IDENTXLQNVLLDCIHYQSRHTADNIAKILKDVVSEWGIQDKVVAIVTDNA
FT                 SNMLKAVTIAGWRQVRCFAHSLNLAVTSGLQQEEIKKVVSKVKSTVEYFKC
FT                 SSYALSKLEDNQKKLCLPILKLKQDCVTRWNSTYDMIIRFLTMKTAIITTL
FT                 AIENPQLNNLSVKEWEIISKCKEVLHIFHVVTESLCSEKHVSLSKIPIYVC
FT                 AMLDKLNGYLTQKNQSCIEELCQTIKREINTRFGDGESDKLISQATLLDPR
FT                 IKSHGLAPRNAEKAIGDLKQMCATINLNTEQNHQDISAKNEESLSGQLECQ
FT                 SLIWGKFDQQVKNLIAPQNPAAXSALEVDKYLTEELLDRTQDPLIWWKQRK
FT                 DIYPRLYKVMLKRLCITATSVPCERVFSKMGQIINERRSRLKPENVSQIIF
FT                 LAHNLK"
XX
SQ   Sequence 3309 BP; 1009 A; 660 C; 704 G; 929 T; 7 other;
     tagagatggg taggtccgga tggaaacggt tccttggacc cgcatcagct gcgctagtga        60
     tggatgaaat ccgagtgcaa gtcggacacg catcctggac cgcatcggtt gtgggtccag       120
     gccagcaaac aggtcaggcg cggccggagt tggaaacgcg gtggtggagt ggaagggaga       180
     cgttgtaaag cccacgccgg atgtggaccc cgccataaac acagcagggt ggggtgacct       240
     gctggggtgg ctgggcggct acctgctccc gaattccgcc agctctgtgt gactcttgcc       300
     tggcagtcgc tgcacaacac aggcgaggct ggcagacagg cgtatttttt ctgacccgtc       360
     tattggtctt gggccgcgtc ccctaacagg agtcgcctta ctgacagacg tgttgctgaa       420
     acagttcaac aatcgtggtg ttttgttcac ttttctgaat ttgtgttgcc attcactgca       480
     caactgttcc ggttccgttg aaaaggtaag attactactg caaggttttt cagaataata       540
     ctaactgttg attgtgtgcc aaaaaacttg gcagtaacat ttgattgctc ggtttttgtg       600
     tattttatgg tatggtttta aagtgtgcat cggcggggcc cgcgcgccgc aagtcgattt       660
     tggccattgc atgtgatatt atggacacta ctcttggtcc agtgatttaa ttaccgaacg       720
     aattaagctt tttagtcata cttaactaat gtgtgtgtgc ctgtgctggc taggtggttt       780
     agaacagttt tttcttgttt tcgtagattt cattatgcca ccaccgaaga atagtgaagt       840
     gtggaatcac tttacagtcc aagataataa agctaaatgc cgatattgct gtctggatct       900
     ttcgtacaat ccaagaactg gaacgggaaa tctcgtcagg catatgaaga ggaaacacca       960
     taacattccc ctacaccgtg aaacacttca aataaattta cctagcaatg aagaatttac      1020
     caatatcagt agcaattata atgaaactat tcacaattct ttatctgaat ctgtgccatc      1080
     cagttcagaa caagttttac cgtccacttc agcagtcttc aacccctgca gcagatcaaa      1140
     tttaattaca aattatacga cagtacaaga ccctgccagt tatcgatcca agcaaattga      1200
     taatcagtta ttaaaaatga ttgtaaaaga ataccatcca tttaaaattg tagaagatcc      1260
     agagttccga aaactgctga acttactttg tccagcctat aagataccaa ccagaaaaac      1320
     agtatcttgc agtttgttgc ctgccatcca caacgaatta aaagaagaaa ctcgaaaatt      1380
     attgatgcga ggaacagatg tgtctttaac cgctgatgga tggacatcac aaaataatca      1440
     aaatcatttc tatgcaataa cagctcactt catcgatgaa aacacawcct tgcaaaatgt      1500
     gctgctggac tgtattcatt atcaaagccg gcacacagct gacaatatag caaaaattct      1560
     caaagatgtt gtgtctgaat ggggtataca ggataaagtt gttgccatag ttacagataa      1620
     tgctagcaac atgttgaagg ctgtgacaat cgcagggtgg agacaagtga ggtgctttgc      1680
     acactcctta aatttggcag taactagtgg cctgcaacaa gaagaaatta aaaaagtcgt      1740
     gtcaaaagtc aaaagtactg tagaatattt taaatgcagt tcatatgcmt tatcgaagct      1800
     agaggataat caaaaaaagt tatgccttcc gattttgaaa ctgaaacagg actgtgtaac      1860
     tcgttggaat tccacatatg atatgattat tagatttctt acaatgaaga ctgctataat      1920
     tactactcta gccattgaga acccacaact aaacaatttg tctgtcaagg agtgggaaat      1980
     tatttcaaaa tgcaaggaag tattacatat tttccatgtt gttacagagt ctctttgctc      2040
     agaaaaacat gtttccttgt caaaaatacc catttatgtt tgtgccatgc ttgacaaatt      2100
     aaatggatac ttaacacaaa aaaatcaaag ttgtattgaa gaactatgcc agacaattaa      2160
     gcgcgagata aacacaagat ttggtgatgg tgaatcagac aaattaattt ctcaggcgac      2220
     tttgctggat ccaaggatca aatctcatgg tctagcgcct agaaacgcag aaaaagcaat      2280
     aggtgacctc aagcagatgt gtgctacaat taacttaaat actgaacaaa accatcaaga      2340
     cattagtgca aagaatgaag agtctctctc aggtcaactt gaatgtcagt cgttgatttg      2400
     gggaaaattt gatcagcaag taaagaattt gattgctcca caaaatcctg ctgcakcgag      2460
     cgctttagaa gtagacaaat atcttactga agaactcctt gacaggactc aagatcctct      2520
     tatctggtgg aaacaacgaa aagatattta cccacgtctc tataaggtga tgctgaaacg      2580
     gctgtgtatc actgccacct ctgtgccatg tgagagagtt ttttccaaga tgggccaaat      2640
     aattaatgag cgacggagca gactgaagcc tgaaaatgta tctcaaatca tatttcttgc      2700
     tcacaattta aaatgactta tacatgtttg tggatgtgtg tctttacagg aaagatttct      2760
     gagtcgataa ataattttgt acatagttaa gactcgtaat tattttaaaa tattgattga      2820
     tggaagtgtg tgttttacat taacaactta gttcamaaag gttttagttt cctacaaata      2880
     attagacaaa tactactgtg atttgggtga catgtatakc aaatgatgac tgtgatttta      2940
     taatgcgaca gtgtttgtga ttttctggca ataaaacact tttatcacag ttaacttgct      3000
     ctatttttta catcataact atctgttaat aagttactgc atattatata amtcctgtgt      3060
     gaccaactgc aatccttctc ggtcagagaa gattcacttg atagatacgc ttcggccgcc      3120
     ggctgtgcag ttgtaccagt gcaggtccag tggacgcgga tccacttsac agacacggtc      3180
     catccggccg gccggctgca gagccggacc catacgggtc cagcggacac ggaacctgga      3240
     tgcaggtccg cagagctgga tgcagatccg gacccgactc ctttaaaatc tcggacctac      3300
     ccatctcta                                                              3309
//
ID   hAT-32N1_DTa repbase;    DNA;    INV; 596 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-32N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-596
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6243-6243 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 596 BP; 199 A; 92 C; 98 G; 207 T; 0 other;
     tagacctcgg attttgcata tttgtccatt tttggtccga tttttaccaa aatttctagg        60
     taggtgtcat atttttcaaa tgtaataaat tcggatgcat atcggaaata tgcaaaatat       120
     atatgcataa aatatgcaaa atatatgcga acaactggag gctcaaattt ttaatgcagc       180
     cctctggtat tctaaggaac cttcagtaaa cacggcgagc aatttaaacg agcagtttgg       240
     ccgatagggc caaaaactat tctgcccctt ttactatttt tgcccccttc tcgcctactc       300
     gttggaaata taaatagggt ttccttaaat ttgggaaaaa attagatatc tcagaaatga       360
     cgaaaaggaa caaacaattt tcttcgggta aattaggttg gctatgaaat ggtcaatctt       420
     gaatagttga gtttatttta tattttgcat attttatgca tatgcatttt atgcaaatat       480
     gcaaaaaaaa taaaatatgc cattaatttt aaactatatt tttattgaaa cgaactttgg       540
     tgttttcgga attgatctat ctttatccta taaaaatatg caaaatccga ggtcta           596
//
ID   hAT-32_DTa  repbase;    DNA;    INV; 2196 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   15-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-32_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2196
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6247-6247 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(331..447,531..1331,1395..1904)
FT                 /product="hAT-32_DTa_1p"
FT                 /translation="MPKSQKLKNNLIKKWFDSIPEKCFKIDGNEIICTICD
FT                 KKQHLATSLHIKWKASDDNATSSNNIDKVFKKDLCTALVAANIPWNVLSNT
FT                 TFKNFLNKYTGQHIPDESTLRKNYLDVCYEESIRKIRDSIKDESIWISVDE
FT                 TTDKQGRYVANLIVGALSENESKQSFVLSCKQLKEVNHATVSRFVNDSIRI
FT                 LWPKGNENKVLLLLTDAAAYMIKAGKNLKVFYPNLIHITCLAHGLNLIAER
FT                 VRTSFPVANSFISCVKKIFVKAPLRVQRYKQILNKELPPEPIITRWGTWLK
FT                 AASFYADNIEGIEEVLDTLNSEDAESIKLAKELLKNSTLRRDFIYIKSNFN
FT                 RLGEIITSLEAKGLLLFSSMNLVKEAENIIDNISGDLGMDLKHKFEAILKR
FT                 NPDYNIILKINNILSLNSKDVTGLEPVASENISKYKFAPITSCDVERSFSA
FT                 YKMVFGEKRQSFLINNLEKMLVIYCNTNYLE"
XX
SQ   Sequence 2196 BP; 816 A; 306 C; 363 G; 711 T; 0 other;
     tagacctcgg attttgcata tttgtccatt tttgctccga tttttaccaa aatttgtggg        60
     taggtctcat attttttaag tataataaat tcaagtgcat atcggaaata tgcaaaaaat       120
     atgcaaaaat gtatgcataa aatatgcaaa atatatgcaa aatatgcaat atatatgcaa       180
     aatatatgca aaatatgcaa aattgtttaa aatatttaag tgcactcgat aaatattgta       240
     gtttaagcaa tgtaaaacat atttttcgga ttaaaatcaa tcgccaaaga gaatcttgtc       300
     aagtgaagtg aaccaagtga aatagttaaa atgccgaaat cgcaaaaatt gaagaacaat       360
     ttgatcaaaa aatggtttga tagcattccc gaaaagtgct tcaaaataga tggtaacgag       420
     ataatctgta ctatttgtga taaaaaggta acgttttttt ccaaattaag cccgttttaa       480
     taatggtttt attattttag atttcgttcc aaaaaaaatt tcaattgcag cagcacttag       540
     ctacttcact tcatattaag tggaaggcct ccgacgataa tgcaacttcc agcaacaata       600
     tcgataaagt attcaaaaag gatttatgca cagctttagt tgcggctaac ataccatgga       660
     atgtgcttag taatactacg tttaaaaact tcttgaataa gtacactggg caacatatcc       720
     cagatgaaag tacgctgaga aaaaattatt tggatgtttg ttacgaagaa tccattcgaa       780
     aaattcggga tagtattaaa gatgaaagca tctggatttc tgtggacgaa acgacggaca       840
     agcaaggccg atatgtggca aatttgatcg ttggagcatt aagcgaaaat gaatctaagc       900
     aatcatttgt gttgtcgtgc aagcagttaa aagaagtaaa tcatgcaaca gtatcccgat       960
     ttgtaaatga tagtattcgc attttgtggc caaaagggaa cgagaacaaa gttttgttac      1020
     tgttaacgga tgctgcagct tacatgataa aagctggtaa aaatttaaaa gttttttatc      1080
     caaatcttat acatataact tgtttggcac acggtctaaa tttaattgct gaaagagtta      1140
     gaacatcatt tccagtcgca aattcgttta tatcatgtgt aaaaaaaatt ttcgtaaaag      1200
     ctccgcttag agtccaacga tataagcaaa tattaaataa ggagttacca ccagaaccaa      1260
     taattaccag atggggtacg tggttaaagg cagcatcatt ttatgcagat aatatagagg      1320
     gtatagaaga ggtaagataa taaagtgcta aaaggtaagc actgtactaa caaatatata      1380
     tttttttaat ttaggttctt gacacgctga actcagaaga tgccgaatcc ataaagctgg      1440
     caaaagaact gctgaaaaat tcaacgttac gtcgagattt tatttatatt aaatcaaatt      1500
     ttaacagatt aggagaaata attacgtccc tggaagcaaa gggcttactc ttattttctt      1560
     caatgaatct tgtcaaggaa gcagaaaaca taatagataa tatatctggt gacctcggaa      1620
     tggacttaaa acataaattt gaagcaattt taaaaagaaa tcccgactat aatataattt      1680
     taaaaattaa caatatatta agtctcaatt ctaaagatgt tactggactg gaacccgtcg      1740
     ctagtgaaaa tattagtaaa tataaatttg caccaattac ttcatgcgac gtagaaagaa      1800
     gcttttcggc atacaaaatg gtttttggag agaaacgtca aagtttctta attaataatt      1860
     tagagaaaat gcttgttata tattgcaata ccaattatct tgaataatat ataaatcatc      1920
     tataattata cattttagtg ttatttcttt attggttaat cacatttgca tattttgcat      1980
     atgttttgca tattttgcat atattttgca tatattttgc atattttgca tatattttgc      2040
     atattttatg catatgcatt ttatgcaaat atgcaaaaaa aataaaatat gccattcatt      2100
     ttaaactata tttttattga aacgaacttt ggtgttttcg gaattgatct atctttatcc      2160
     tataaaaata tgcaaatatg caaaatccga ggtcta                                2196
//
ID   hAT-32_LMi  repbase;    DNA;    INV; 5694 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.12, Created)
DT   28-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5694
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3319-3319 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3873..5507
FT                 /product="hAT-32_LMi_1p"
FT                 /translation="MKEHLRKIEASQQGGKRMVHYLSHDVQNEFIEIAGDF
FT                 VRQTILTELKRNKYFSVIVDATADEAQTEQHVFILRYVSLEEQNQYKIRER
FT                 FLDFVECFNKTGQSIAKMICDELQRYGLQLSDCRGQGYDNGTNMSGIYQGA
FT                 QALILKENPLAIFSPCGAHSLNLCGVHAAESCADAVTFFGIVSKTYNFFHS
FT                 SPQRWKVLKENIGSSLHGLSGTRWSARIDAVRPFAKHLPGLQKAVELAFNF
FT                 NMTAEARTELKGIQKYLKSFQCVLMSSMWYKVLAAINLRNVVLQAREATIE
FT                 VESTNVKSLVEELNKLRNSWDTIYAESCKVAENIGISPNLNVTIRGTEIRK
FT                 GKRKCFIDETPEEDLNLSPEDSFKLNVFNVILDTVVGNLTIRYAAIDNMMD
FT                 TFGFLWNYVSLDDSTLSERVENMASLYSVDVNKQDLKEEILQFKNIHAANF
FT                 GPEPLSPLRLLNALQKCNFNNIFXNIMVALRIFCTLPVTDAQAERSFSVLA
FT                 RVKNCFRTTMGQERLVGLAMISIESELARSLDYTAVIKEFASKKVRKKV"
XX
SQ   Sequence 5694 BP; 1685 A; 1122 C; 1269 G; 1613 T; 5 other;
     cagggccggc gttagggggg gtaagcgggg caaaagtacc ccgggcccag gcccsccggt        60
     ccccggccct ggtgcctaaa taaatacaca tgaaatgcaa gttttaatac ccgcactttg       120
     attttgaacc aaaggcctgg ggggaagggg ccctcattga atatgtggga tcaaataagt       180
     ttatttctag ccatatcgaa catgaatgct acgtaatatg tacgagtatg cttgtacgaa       240
     ttttatactt cgatgcccct cgtcaagttc tactttcgca tactgactta gctgcagcgc       300
     tcgttctgtc acgtttagga cgacattgta gacaacaatg tttacgtttc gcccgtttta       360
     aaacggttta cgctttcact tttgtctgct tgagaaggcg gccggctggc tgagctactg       420
     tgcggatatg aaaaagcttc tattgttgta ttttgttttg tattctggct tgtcattgta       480
     gtgctcagaa gtcagtcgag ctaaatagcc tgcagcacgc tctccgttac tttgtggttg       540
     tgtagcaagt tacatttttg tatcgttgca ccacacagtt ttacgagatt tgtcgtaatg       600
     gaaacgaatg acctgagtgg aagaaagtgt tacagtgctt catcaggtta tcaaaaacga       660
     aagcgtaagg ctaaaaaaga cagtgctgcg aaaaagggac agacgttgtt accctttgtg       720
     ccactcgata aaccagcagt gtcggtggag ccagaaggac gtggagatga cgttgagcct       780
     tccttaattg aggaagaacg tgagcacaac tctcagagac aaggtacgtc tttagttaga       840
     cagttccact tataacatgt taaccttccg gcaggcgcgc gttgtaaaat ttacaacagg       900
     gacattttta aataaaagca agcctgtgct gaacaaaatg tttttttcca gaaagtagtt       960
     cacattcact gtcttcgcct ttttaaacaa aagttcttgc actttcagtt cttttgataa      1020
     taatttagcc acttaaactg acatacgttc attttcatag caccgtccac agacaatttt      1080
     ttctcagtgt gctatttacc agcaaagtta ttacatctat cacatttaat tgaagtggag      1140
     gaattttttt gacgtccaca gggatacacg tcctgtgttt ctttgcctga ggttcagggt      1200
     gttgatcttc ggaagtcaat gcttgtacac aaaactgcat aaggaatatg gtgagatcgc      1260
     ctggcaatga tttgagttga gccctactat cggatttttt attatgggca ctcgagttta      1320
     gggtttaatt acaagtgaat caataggcct atcgcaaaat gagttatacc aatattttta      1380
     tagttttttt ctgcgttatg ctatatggag caatttggtt ttaaaattca atatatattt      1440
     tttattttag attgtagtaa ggattgtgca gttttcggca tctttgctaa gaactgttga      1500
     cttcagaatt gtatagcctg aaacctattt gtccgatgtt agtgaaattt taataggcaa      1560
     taggcacata tattgacagt ggaaatctca aattacagaa tttttcagtt aatcaaaaaa      1620
     aagcttcttg tgatttttct aaagtaactt tttctcagcc caggataaaa atataacaga      1680
     aagggtgggt ttcttttgaa ggtctctttt ttggttttaa gaagcttcaa ttgctgtgac      1740
     tgtacagtgt gatacggatt tgagactggt tgtgtgcgtg tgcgatttcg cgattaacag      1800
     tgagcaccac tgtgaaatga gtgcagcgtt gccgtgcact gtttgccaac taacccgcgt      1860
     tccttccgag ccgcaaccgt tacacctggt catggcaacg tagaatgatt cctctactaa      1920
     ccccgctgct aatcgcacgg tccaacacgc acactgtctc ccttcaatat tactctttat      1980
     aaaatccata tcacactgta tggtcacagt aattgcagct tcttaaaacc acaaaagaaa      2040
     cccacccttt ctgttatatg tttatcctgg gctgagaaaa ggttacttta gaaaaatcac      2100
     aagaactttt tttttattaa ctgaaaaatt ctgtaatttg acatttccac tgtcaatata      2160
     tgtgcctatt acctattaaa atttcattaa catcggacaa gaaaactgcg caaccatact      2220
     taataattgg agatacgagt cgcagccaaa ttgccacata cagctgataa ccagccaggc      2280
     agccatattg caatcacgaa tcggatgcaa tccatgacat tgcctgggat ttccatgcga      2340
     tcggcgatca gcgaccgatc actgcgattt gcccacacac gtacaatcta cgaagcaatc      2400
     ggtagcccat gcgatggacc gcgatccgtc gcacgtgtgt ggggcccttt agaactgaaa      2460
     caaaacatca aaagaaccga ttaaattcac gtgccagtat aaccaaaata acgtttaatc      2520
     ttcacataca caaaataaac aatgaataaa tatagttaac tttttattac agatgcctct      2580
     gcaaattgac tgctggaaca aagcttgtga ctgccacact agcaggcgcg tgttatactt      2640
     tttacaacat tcgatacctc gttgcttaca attcagaaaa caaactgaga gagctaagca      2700
     aaggaactgg tgccgtttga acactgttsa gtaagcatca gtactggaat acactgcagt      2760
     ggtggcgcaa tatctcaagt ttaaggcatc gattaggcat aaaaaccacc cgcggccggc      2820
     cggcccgcgg gccgccgcgc cccccggccc ggcccccccg ccccgggggc cgcccccggc      2880
     ggcccgcgcg gccgcgcggg cgcgccgccg gcccccgcgg ctctgctgtg ctttttacaa      2940
     cagcgcaccc gctcgaaggt taagcttgtt gtcgtttagg tacgtaagaa cgaccctctc      3000
     gtccaaaaat tagtacaatt tttgcagatg ttggtacgca agaaagacgt ttagaagcat      3060
     ctgtagcatc ggcggtgcag agatgggatc acgtcgatca agagagagac gacagtaagg      3120
     gtagcatctg cgttcaggag gagtgcacac taaaacgtca aactaatagt catagtatta      3180
     gagcaagtga cagtgacagg cgaaatcttg cagaaactga atttgtttta acggctacat      3240
     cgacagggaa tgagaagctt tcakatttcg atatcggtct gtggagtgaa aaaaggcact      3300
     tcagcagttt agaggtagca gaagctgtta ggcgaggacc tgtgcaaaca ccgaaaagac      3360
     tgccgcggga ccgaaaaagt aatcaacctt tccctttaag tgtgtttgag agaatcttaa      3420
     aaaatgggga aatttcaaaa agagactggc ttgtttggag catagaaaag gaagcactct      3480
     actgctttgc ttgccgatta ttttcgcgac gcacggatgt ctctaagtct gatttggctc      3540
     taggcaatgg ctgggggtta tcaagaggct ggaaaaagct aaaacaaaaa gtgagtgagc      3600
     atgaaagcag cgctgatcac aaaacgtgtt acttagaatg gcgcaaatta gaaaatgcgc      3660
     taaatagtag ttcggccata gcaaatcttt tagaccgaaa cattttacga caagagcagt      3720
     attggattga agtactgcat cgcgtaatcg aagcgattct tttcctcgcg gaaagaggtt      3780
     tagctttgag aggtgaaaat gacttagtcg gagatcgtcg gaatggcaat tttttgggcc      3840
     tcttagagtt tttggcgaag tttgatccag ttatgaaaga gcatttaaga aaaattgaag      3900
     cgtcgcaaca aggaggaaaa cgsatggttc attatctgtc acacgatgtt cagaacgaat      3960
     ttattgaaat agctggagac tttgttcgcc aaactatttt aacagagttg aaacgtaata      4020
     aatacttttc tgttatagta gatgcgactg ccgatgaagc ccaaacagag caacatgttt      4080
     ttatactgcg ttacgtttcc cttgaggaac aaaatcaata caaaattaga gagcgttttc      4140
     tcgactttgt tgagtgtttc aacaagacag gtcagtcaat cgctaaaatg atttgcgatg      4200
     agcttcaacg ttatggctta cagctttcag actgtcgtgg gcagggttac gacaacggga      4260
     ccaatatgag tggcatctat cagggagctc aagcgcttat attaaaagaa aacccgttgg      4320
     caattttttc tccttgcggt gctcattcat taaatctgtg tggcgtccat gctgcggaga      4380
     gttgcgcgga tgcagtaact tttttcggaa ttgtttcgaa aacctataat ttttttcatt      4440
     ccagtcccca aagatggaaa gttttaaagg aaaatattgg gtcgtccctt cacgggctgt      4500
     cgggaacgag atggtctgcg aggatagatg cagtgcgtcc atttgctaag catttgccag      4560
     gattacaaaa ggctgttgaa cttgctttta actttaatat gactgcagag gcacgtactg      4620
     aactaaaggg cattcagaag tatttaaaat catttcagtg tgtcttgatg tcttcaatgt      4680
     ggtacaaagt actagctgct ataaacttac gtaacgttgt gcttcaagca agggaagcta      4740
     caatagaagt tgaaagtacc aatgtgaaga gtctagtgga agaattaaat aaattgagaa      4800
     atagttggga tactatttac gcagaaagtt gcaaggtagc agaaaatatt ggtatatcac      4860
     ctaacttgaa tgtaacgatt cgcggcacag agatacggaa aggcaaaaga aaatgcttca      4920
     tagatgagac accagaagaa gatttaaacc tgagcccaga ggacagtttt aaactaaatg      4980
     ttttcaatgt tattctagat acagttgtgg gaaacttaac tataaggtat gctgccatag      5040
     acaacatgat ggacacattt ggcttcttgt ggaactacgt aagcctagat gattctacac      5100
     tctcagagcg cgtagaaaac atggcatcat tgtacagcgt agacgtcaat aagcaggatt      5160
     tgaaagaaga aattttgcag tttaaaaata ttcatgcagc taattttggg cctgaaccac      5220
     ttagccctct gcgtcttctc aatgctcttc aaaagtgcaa tttcaataat atctttcmaa      5280
     atataatggt agccttacgg attttctgca ctttgcccgt tactgatgcc caagcagagc      5340
     ggtcattcag cgttcttgcg agagtcaaga attgttttag aactacaatg gggcaagagc      5400
     gccttgttgg attagccatg atctcaatag agtcagagtt agcccgctca ttagattata      5460
     ctgcagttat aaaagagttc gcatctaaaa aagttagaaa gaaggtataa ttttgtaaag      5520
     tattgaatgt atgtaaactg tgagcattaa aaaatttctt ataaaaggcg ttgtttgatt      5580
     ttttgcatta aaatttactg actttatcca aaaaacgaaa gtttaaaatg aaatattttg      5640
     ggaaggggcc taagatcact tacccggggc ccgtaattcc tagcgccggc cctg            5694
//
ID   hAT-33_DTa  repbase;    DNA;    INV; 1701 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   15-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-33_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1701
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (15-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           315..1283
FT                 /product="hAT-33_DTa_1p"
FT                 /translation="MVAGFRGYDHLFCVNHLLNNIIEKAFKIHPELELLLS
FT                 KSSKLVKYFKKSGENVNLNSSLKSVCPTRWNTIFYTLKSIEENWHEITSIL
FT                 VRKNEFERIMDLNLRDLSSIVKVLTPFEETSKVFEGELYPTLHFVIPYIGK
FT                 LKKSCSDNATTTEIAEKIKTFLKHALDNVVSPYITKFHKLAHFLFPPTNQM
FT                 IKFSDQDKKETMEICKGMMKQYLDNTNYAGVEANIEHIFMEYIPQQNRNNT
FT                 QDRNTSEFNVLTWWESSKSQLPSLYKLSQKVFAIPASSASSERAFSRARHL
FT                 LSEKRSTIGNNPSLVNEIMFLNSNLNFSETT"
XX
SQ   Sequence 1701 BP; 592 A; 298 C; 297 G; 514 T; 0 other;
     tagagccctg catgaatcaa cagtatgctt aaatatttcg aaacatacga atcccttatg        60
     tcaactgtat atatgtttcg aaacgtctgg aaatgattcg aaacattcta aggtgtttcg       120
     aaacattggg gaggcctagc tttaacagta tatcagttta ttttgtttgt ctaaaagtgc       180
     tttccaaaat ggacgttgat ttgccaagtg gctccagcag ttctgtgagt atattttgaa       240
     atttaataaa agagtcacca tgataatttt gcataactag gccctccaaa caattcaaga       300
     aaaaaggatc taatatggta gcaggtttta gagggtatga tcatttattc tgtgtgaacc       360
     acctattgaa caacataatt gaaaaagcgt tcaagatcca ccctgaacta gaactactat       420
     tatctaaatc gagtaaatta gtaaaatatt ttaagaagtc aggagaaaat gtaaatttaa       480
     actccagctt gaaaagtgtc tgtcctacaa gatggaatac catattttat acccttaaat       540
     ctattgaaga aaactggcat gaaataactt ctatattagt ccggaaaaat gaatttgaga       600
     ggattatgga ccttaacttg agggatctga gctcaatagt taaagtttta acgccctttg       660
     aagaaacttc taaggttttt gagggagaat tataccctac tctgcatttc gtaataccat       720
     atattggtaa actaaaaaaa tcttgtagcg acaacgcaac aactacagaa atcgctgaaa       780
     aaatcaaaac atttttgaag cacgctttgg acaatgtggt ctctccatac attacaaaat       840
     ttcacaagtt ggcccatttt ttgtttcctc caacaaatca aatgataaaa ttcagcgacc       900
     aggataaaaa ggaaacaatg gaaatctgta agggaatgat gaagcagtac cttgataata       960
     ccaactatgc tggcgttgaa gccaatatag aacatatttt catggaatat attccacaac      1020
     aaaaccgcaa taatacacag gatagaaata ctagcgaatt taatgttttg acgtggtggg      1080
     agagcagcaa atcgcaactt ccgtcgctat ataaactgtc tcaaaaagta tttgccatac      1140
     ccgccagtag cgcctcatcg gagagggcat tttcacgagc aaggcatttg ctgagtgaaa      1200
     aaaggagcac catagggaac aatccgagct tggtgaatga aattatgttt ttaaacagca      1260
     atctaaattt tagtgaaaca acataaaata aaatatttgt gaaaaccata aattaaaata      1320
     caattttgtt taatttccaa acctgctaat acaaaattat ctattacagc ttttgtttat      1380
     aagtcacgtt tggagaccga atcgtcagta tcacactgtt gtagatgttt cgaatcattt      1440
     gaatcttact gtaaaaatgt ttcgaaacat aaaatgtctc gaaaactgtt gattcatgca      1500
     gggctctact tagtattcaa ttttaatttc cgcgctgact actatgatat ttttctcaaa      1560
     aaaacagtat ttttcattcg cgtttggggg ggggtcaaac gtcattttag accataagta      1620
     tgttcgccaa tatggcttag aatcctttaa agatttcatt ccccctatac gatttttggg      1680
     gtcccaaatc gacccaccct a                                                1701
//
ID   hAT-33_LMi  repbase;    DNA;    INV; 2975 BP.
XX
AC   .
XX
DT   29-MAY-2014 (Rel. 19.12, Created)
DT   29-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2975
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3320-3320 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus. 3'-portion is not covered.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(481..618,587..904,1132..1677,1641..2189)
FT                 /product="hAT-33_LMi_1p"
FT                 /translation="MASKKRKLSEENRLFNDSWTDLYFFINNNGKPLCLIC
FT                 QKTLAVQKAFAKKLLLFRKHNVKRHYDTEHKAKFASLVGESRKHKINSLKS
FT                 SVKSQQNVFKVQVQSSESNVRASLRVAEILAKSGRPFTDSELIKQCALVMA
FT                 EEVCPEQKRKFENGEDLFQHLEQALVSMHLPWEKLVSVTTDGGKNMSGQHK
FT                 GLVGKIKTKLAELGCDIPLSFHXIIHQEALCSKVLAWKEVMDIVISTVNYI
FT                 RKNGLTHRQFQQFLTDVDADHRDVLYYSGVRWLSRAAVLKRFFDLRKEIST
FT                 FMNEKGKSVPELTDPQWLIELGFLTDLTHELNTLNVKLQGKKVKYSECKAS
FT                 RKKIISDMHTDVKAFQMKNKLFIKHIDEKKLDHFPNCKMAVEEAEKNFHWN
FT                 NDKMKCVLKQLQNQFNDRFGDFEKVSGSLKIFANPFLCDIEDVPSNLQMNL
FT                 IDLQCNESLKNSFIEINDLVXFYGSLPSYFNELKKFAXQLITMFGSTYLCE
FT                 QTFSILNIEKINMLLVSQTSI"
XX
SQ   Sequence 2975 BP; 942 A; 541 C; 604 G; 877 T; 11 other;
     cagcggtcgg caagccgtgg tccgtgggcc ttctccttgc ggcccgcggc tcatttctaa        60
     atacctactt aaataattac gttggcacgc actctgttca agcgagcgtg catttaaagt       120
     gagcgtgtca ctctgcgatc ttgaagagcg ttgtggatct acgatgcgcc ttactgcgca       180
     agcctccccc cccccccccg cagcgaagaa acaacgaaat accatgacaa tacagttgct       240
     acccgcgctt cgtccgtgct agttgactgt gtgttgaaag tgctcaagta cgtattttca       300
     ttgaaaccac gccaagccga aggaatacta ttttgtttga atttaggtaa gtgtgagaga       360
     ttattttaca cgcaatttaa aaaagctaac tagcattggg ttaaaaccat agattcactt       420
     tttaaacaca acaatatttc tattgttgca gaatttactg ctggttatag gattttactg       480
     atggcttcga aaaaacggaa gttgtctgaa gaaaatagac tgttcaatga ttcatggaca       540
     gatttatact tttttattaa taacaatgga aaaccgctat gcttaatttg ccaaaaaact       600
     cttgctgttc agaaagcata acgtcaaacg ccattacgat actgagcata aagctaaatt       660
     tgcaagtctt gtgggcgagt cacgaaaaca taaaattaac tcactaaaat catcagtaaa       720
     gagccaacaa aatgttttta aggttcaagt tcaaagtagt gagtcgaatg tacgtgcgag       780
     tttaagggta gcggaaattc ttgccaagtc tggaagaccg tttacagaca gtgaattaat       840
     aaaacaatgt gcattggtta tggctgagga ggtgtgtcca gaacaaaaaa ggaagtttga       900
     aaattaagtc tttcagccag aacgtgtacc cgccgcactg aagatttggg cgataattta       960
     tgccagcaac ttcgcgaaaa ggcacaaaat ttgaatggtt ttctttagct ctggatgaaa      1020
     gtaatgagtt tcagataatg cccagcttct aatatttgtt cgcggaatcg atgggaacct      1080
     taatgtctgt gaggagcttt tacaattatg tagtttgaaa ggaacgacta aggggaagat      1140
     ttatttcagc acttagaaca agccttagta tcaatgcatt taccttggga aaaactggtg      1200
     agtgtaacaa ccgacggtgg caagaacatg agtggacaac acaagggttt ggtgggcaaa      1260
     attaaaacta aactagcaga gctaggatgt gacatcccat tatctttcca ttgmattatc      1320
     caccaagaag cgttatgttc caaagtgcta gcatggaaag aagtaatgga cattgtgata      1380
     tccactgtaa actacatcag aaagaatggg ttgactcatc gtcagtttca acagtttctg      1440
     acagatgttg acgcagatca tagagatgtt ttgtattatt ctggagtgag atggttaagc      1500
     agagctgcag tattgaaaag attttttgat ctcagaaaag aaataagtac ctttatgaac      1560
     gaaaaaggta aatctgttcc agaacttaca gatcctcagt ggttaataga gcttggattt      1620
     ttgacagatt taactcatga gttaaatact ctgaatgtaa agcttcaagg aaaaaaataa      1680
     tttctgatat gcacacagac gtgaaggcat tccaaatgaa aaacaagctg ttcataaaac      1740
     atattgacga aaaaaagttg gaccatttcc cgaattgtaa aatggctgtc gaggaagctg      1800
     aaaaaaattt tcattggaat aatgataaaa tgaaatgcgt tttaaaacag ctacaaaatc      1860
     aatttaatga cagatttggt gacttcgaga aagtgtctgg cagtctgaag attttcgcaa      1920
     accctttttt gtgtgatatt gaggatgtac cgagtaattt acaaatgaac ttgattgatc      1980
     tccaatgtaa tgagagtctt aaaaactctt tcattgaaat caatgatctt gttmaatttt      2040
     atggcagctt gccatcttat tttaacgaat tgaaaaagtt tgctsagcaa ctaattacaa      2100
     tgtttggcag tacttactta tgcgaacaaa ctttttcaat tctcaatata gaaaaaataa      2160
     atatgcttct cgtctcacag acgagcattt gagagccatt ctaagaattt caactactaa      2220
     tatgaaagct aacatacaac aaatagccac gcaaattcag tctcaaaagt cacactaatt      2280
     tttaataagt acwgttgtgt gctctgaatt tcatgtttgg taacttttcc tcatttattg      2340
     tmattacttt tgtctacata tcaataaaat tcaacagaat attttgccaa tttttattgt      2400
     cacctatata gacaagctaa ttgggccgaa acacgcagga acgtcgttcc gggacctccc      2460
     tagggtagtt ttcttttaac ctaccagaga ctgggaaagg tacaactatt ttaaaaagta      2520
     atgtamagtg caattcgccg ccgctgcgca agcaccgttt ttgttttcca ttgtgtggcc      2580
     agcaatttgc gggagagtgc cctccaccgt tcgggacttc ccagtagcaa tcggcgttgc      2640
     catagtccct attagccttt tgccagtatt tgtgatctag caatgagtgg cgcactgtat      2700
     tactagcagt gtgtttgaca atacattgaa tgaccacatt tgagtaagaa gtctctacaa      2760
     agtattatta cggacattgt tacttccacg agtcattcct gacgtaacag cactgcctga      2820
     tcttgttcct tgctgtagac cacgtcgtag cggcaagcta tagtatatac ttgttcacat      2880
     tttaagaatc cmtktggtwa taatgtgagm aagtctcgtt ggtgggtktt agaaaaacag      2940
     ttgtgataca tactggagac ttagcacaat gcagc                                 2975
//
ID   hAT-34_DTa  repbase;    DNA;    INV; 1619 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   16-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-34_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1619
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence; both ends are truncated.
XX
SQ   Sequence 1619 BP; 623 A; 300 C; 262 G; 434 T; 0 other;
     acaaaatggt caattaaaaa ctgtaggtcg tttaacacca ttcaagacat tggtttaaag        60
     aaactgtttt cgactttcgt ggacattgga gctcgatatg gaccaaacat tgacgttgaa       120
     aaaattatac cggacccgac gacattgtcg cgaaatatca cccagatgta cgaaaagcaa       180
     agccttgacg tgactgatga aatagccaag gctaaaccta ccggatatgc aataacctct       240
     gacttacgga ccgataactt tttaaaaaga tcgtacatct caattacgaa ccaatatatt       300
     ttaagcggaa aactgacttg tcgattactt gtcataaaat cgatgaacat atcagtgact       360
     ggtatgtaag ctttttgccg taacctaaaa taaaattaaa acatttcctt tatattacag       420
     gctcgaatat aaagcaaaaa gttttggagc aataagggac atttggctgc aatatagacc       480
     atgacatcac agtaattcta acagaccggg gatctaatat gatcagcgca ttaaaaaaca       540
     atcgacatat tcactgcgca aaccatttgc tgaataatat tgtggagaaa agtatatcaa       600
     gttgcccaga aattaacaaa attttggacc gtggaaacaa attggttaaa actggccaaa       660
     ccttaaaaag tttttgcaaa acaagatgga atacggtgta ctacacgtta tcttcgatat       720
     ctaaaaattg ggaacaaatt actgaaaagc ttaaggaaac aaaacaagaa catagactta       780
     acggaataag tctaagaggc cttcaatcaa tttcggacgt tttgaaaaaa attaaaacgg       840
     cttcaaatga gttaaagggg gaaaaatatc ccactattca tttggttatt ccacacttag       900
     aacacataaa atctaacttc gaaattgact acaacgacac tgctctaacc acggaactaa       960
     tagtcgagct tcgacaactt cttgaaaccg ttttcaacaa acacataact aaatttcata      1020
     aactagccat tttttttccg ccaacaaacc aacttcttac atttaacacg gaagaaaaag      1080
     atgctatttt cgatttctgc cgagaattga tgagaaaaca taagtcaata aatatcccaa      1140
     aaaacacgga agcagttttc caacccgaga agacttcaat tttttcaagc tttattcaaa      1200
     ataacacaga tgacccggca gaaaacgata tagaaacaga gttgcaatga tacaaatcgg      1260
     ttaaaatctc cctaggacat aatttcaatg tgcttaaatg gtgggaatca aacaaagaac      1320
     attacccaat attatacaaa gtcagctgcg aggtattatg cattcctgac agtagtgcat      1380
     cttctgaaag agcattttct caggctcgtt tgctgatttc agaaaagaga agccaaattt      1440
     caaaatccag cgaaaaagta aaccaaatca tgtttttaaa ctcaaattta aagcaaaact      1500
     cataaacata aacaaataaa tttatcgacg agaataaaaa aagttattaa acggtgttct      1560
     taagatttta tgccattttt cggtaaattt cctctaggat tagcactacg atttgcgaa       1619
//
ID   hAT-34_LMi  repbase;    DNA;    INV; 2584 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 19.12, Created)
DT   02-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2584
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3321-3321 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(647..952,930..1196,1212..1700,1685..2218)
FT                 /product="hAT-34_LMi_1p"
FT                 /translation="MCYHTVKHHMSLKSVDCTSRLNSNLFNDSVTVKSVTL
FT                 AEPKQQHFESSFGPDTVKQICDGLSLISCYSIATHASNHEAKNIPFSIFYP
FT                 QNGIQVKLLSFTAKNCLVSLPNETTSTISTSTALEENKIDKSRCIAFCGDN
FT                 ANTNFGGVRRAGTNNAFIRLKSEVNENLLGVGCPAHLLHNAAKTAADVMML
FT                 TLNFSLLLHIHSTNRGLKVCEFVDIEYHALLSHTKTRLLSLLAVERVLKLY
FT                 DALKSFFLLEEKAPKFLTTLFQNPLTEAYLWFLHSQLSVFQSQIXKLEKAD
FT                 ISVIEVAAILENTIRVIERRKEESFIPLKVTSLLEDSKVALTSDIQKFHVD
FT                 VVQFYETCTAYNVYSLLEKWSTNLNEFXIFKWMLLDTEPEWSNVTRTITFV
FT                 QGRGLSVDDSLLFDQFSLLKQFTESEINKNCDNWGSKSCQEKRTYFFRQIG
FT                 CEEQYSQLLNLCEFVFSTPGHNANVERVFSLMNVQWTEERNRLQVPTVEAI
FT                 IKCVFNYEMSCSKFYEYIIQRKDLLCKAQNSDKYDV"
XX
SQ   Sequence 2584 BP; 818 A; 450 C; 513 G; 799 T; 4 other;
     tagggttgcc agacgtcccg gttttccggg acagtcccgg tttcggattt aaaaaatgag        60
     cgtcccgaaa actgctttcg ggactacagt ttagtcccgg ttttgtgatg ccaaagaaat       120
     actctcatgc cgtctatttc ttcccaaatg ctggcgtgga tttgtatttt aactgtcact       180
     gttmagcaaa ataatgactt ttgtttcatt gttgcacctg ccagcgtcta taaaggactt       240
     tattgcgcgt aacgcttmtt tccgttatta actctggtct tgggattcag ttcagttaag       300
     acgttgcagc tacagtacgt cgttctctgt ccgaggctta ttgtgcatag ttcatatttg       360
     cgtgtgtgtg aagtgagctc caaatgccaa agcgaaagtg ttcctttcaa gacaaatata       420
     cagaagaatg gtatttcatc aaacgaggaa gacatgacta tgaagtggaa tgtggaatat       480
     gtaagtgcat gtttctgttt cacatggagg aagggcagat attacagatc atttaggcag       540
     ccaaaagcat aaatcaaaca tgtgctctgc tagcacttaa aaaaatagct tttttatttc       600
     aaagtcatca aaacagagcc aatcagtagc agcagcggaa ttaacaatgt gttatcatac       660
     tgttaaacat catatgtcct tgaaatctgt agactgtact tctaggctaa actccaatct       720
     ttttaacgat tctgtcacag tgaagagtgt gacgttggca gaaccaaaac aacagcactt       780
     tgaaagcagt tttggccctg acactgtcaa acaaatatgc gacggccttt cactgatcag       840
     ctgttattca atagctacac atgcgagtaa tcacgaggct aaaaatattc cattttcaat       900
     attttaccct cagaatggca ttcaagtgaa attgcttagt ttcactgcca aatgaaacca       960
     catctacaat cagtacgtct actgcattag aagaaaataa aattgataag agtaggtgta      1020
     ttgcattttg cggtgacaat gctaacacta attttggagg agtgcgacga gcaggtacaa      1080
     acaatgcatt tattagactg aaaagtgaag taaatgaaaa tcttttagga gttggctgcc      1140
     ctgctcactt actacacaac gctgccaaga cagccgctga cgtgatgatg ttgacgtaga      1200
     aacctttata attaaacttt tcattacttc tccatataca cagtacgaac agaggcctaa      1260
     aggtttgtga gtttgtggac atagagtatc atgcgttgtt gtcacataca aaaacaaggt      1320
     tgttatcttt gttggctgta gagagagtac tgaagttgta tgatgctctt aaatcattct      1380
     tcctcttaga agaaaaggca cctaaatttc tgacaaccct cttccagaat ccgttaacgg      1440
     aagcatacct gtggttcctc catagtcagt tgagcgtgtt tcagagccaa atattkaaac      1500
     ttgaaaaagc agacatcagt gttatagaag tagctgcgat tttggaaaat actattagag      1560
     tcatagaacg tcgtaaagaa gaaagtttca ttccactcaa agtgacatct ctcttggagg      1620
     acagtaaggt tgcattaact agtgacattc aaaaatttca tgttgatgta gtacagtttt      1680
     atgaaacgtg tacagcttat tagaaaaatg gtcaacaaat ctcaatgagt tttmcatttt      1740
     taaatggatg ttgctggaca cagaacctga gtggagcaat gtgacaagga caataacatt      1800
     tgtacaaggt agaggattgt cagtagatga tagtttattg tttgaccagt tttctttact      1860
     caagcagttc actgaatcag aaatcaacaa aaattgcgat aactggggta gtaaatcatg      1920
     tcaggagaaa cggacctatt tctttcggca gattggatgc gaagaacagt attctcagtt      1980
     gctgaatctg tgtgaattcg tcttcagtac tccagggcat aatgcaaacg tggaacgagt      2040
     attttctctc atgaatgtgc aatggactga ggaacgaaac agattacaag taccaacggt      2100
     cgaagcaata attaaatgtg tttttaatta tgaaatgagt tgctctaagt tttatgaata      2160
     catcatacag cggaaagatc ttctctgcaa agctcagaat tcagataaat atgatgtgta      2220
     ggataacaaa ttatgtgaaa tttgcacttc agcatattgt atttcagtgg acaattttgt      2280
     ttctcgtatt aatgtttcaa aagaaaataa aaaattctta tgttaccagt actaatattg      2340
     taaaatgtta ttaccatttg aatgccctcc cttgggtttt attaaattaa ttatagtata      2400
     aagtgcttat ttatttattt tactaaatca attgaataca gcagtaattt gcacaaatat      2460
     ttcacttttt aacgttaaga aaagtgttcg aagtgtcccg gtttatgatt gacaaattat      2520
     ggccgttatt agttaatttt agagaaacgt cccggttcgc tagcaacaaa ttctggcaac      2580
     ccta                                                                   2584
//
ID   hAT-35_DTa  repbase;    DNA;    INV; 2440 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.11, Created)
DT   16-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-35_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2440
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6248-6248 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(322..999,1036..1890)
FT                 /product="hAT-35_DTa_1p"
FT                 /translation="VLSTEELSETKQKLLDGVYTLSKKRGRSKVWDLFSNI
FT                 INGKKEEVHGVVACNICKSVFKFGASTSNLVKHKCYTRVSQTTANVSQVDV
FT                 SQETKQKATALMTKWTIENCRSFKIVQDSGLKDFAKFLIEVGATFGANVDV
FT                 NKLLPHPTTISRNISKMFQLHVGPIKEEILKYKCFGYSLTANLDRQLLKML
FT                 ILILHGELYKGRTSSRSPMAMKSMKGDSCTGMQTLKKKXKNIRAEIKNILE
FT                 QFECNLDHDSPVIXSDRGSNMIAAXRDNQKVHCVNHLINXSIEKAXKILPE
FT                 MTSXVSSCSKXVRYFKKSGSNASFGLSXKSYCPTRWNTVFYLVRSVEVNWV
FT                 GISKHLKEKXEVHRIDNLNVNNLSXISSLLEVXEGVSKKLEASKRPTLHLV
FT                 VPNIKKLQRTCLPDINDSKIIELFKSALNNQLLETVVPNLSKYHNLALLLF
FT                 PPTNKLLQFSTTDKDSXINDCKDIMTTXISGNISKECEDTISPIDDEFAEM
FT                 QIKWRVKSEAIQTQT"
XX
SQ   Sequence 2440 BP; 842 A; 416 C; 431 G; 726 T; 25 other;
     tagaggtctg cttaaataca ttcgaaagtt gaatatattt gaattaattc gaattatcat        60
     gaatgaattg agtgacatcc cacagtcaaa tgaaagcgag tgaatttgaa tgatactgag       120
     tttgacaatt ttcgacattc aattcagatg aattatactg aaatattgct taatataaaa       180
     cgacaaggta ggcatgtcaa taacattcga atcattcgag ttattcgagt tattattagc       240
     aaaaatgaac aatcctgtaa gtttatttgt ttctttctgt tattaatttt atcagtgttt       300
     taaaataatg tggtctgtta ggtcttatcc actgaagagc tttcagaaac aaagcagaaa       360
     cttctcgatg gagtgtatac cttgagtaag aagagaggaa gaagcaaggt gtgggacttg       420
     ttttcaaata ttataaacgg aaaaaaagaa gaagtccatg gcgttgtcgc ctgcaacatt       480
     tgcaaaagtg tttttaagtt tggagcaagc acatccaact tagtaaaaca taagtgttac       540
     acacgagtat cacagaccac agctaacgtt tcccaagtcg atgtaagcca agaaaccaag       600
     cagaaggcta ctgcgctaat gacgaaatgg actatagaga actgccgctc ctttaaaatt       660
     gttcaggatt ctgggttgaa ggacttcgct aaatttctta tagaagtcgg tgccacgttt       720
     ggtgccaacg tagatgttaa caagctgttg cctcatccta caacaatatc gcgaaacatt       780
     tccaagatgt ttcaattgca tgttggccca atcaaggagg aaattttgaa atacaaatgt       840
     ttcggttatt cgttgactgc gaatttggac cgacaacttc ttaaaatgct catacttatc       900
     ttgcacggtg aactatataa aggaaggact tctagtagat cgcctatggc gatgaaatcc       960
     atgaaaggag attcctgcac aggtatgcaa acgcttaaat aaagcattcg tttttttttt      1020
     aataatttaa cttaaaaaaa akgcaaaaat attcgagcgg aaattaagaa catattggaa      1080
     caattcgaat gcaacctcga ccatgacagt ccagttatta tstcagatcg tgggtccaac      1140
     atgattgcag catktcgcga caatcaaaaa gttcattgcg tgaaccactt gattaataas      1200
     agtatagaga aggcamtcaa aatcttaccg gaaatgacat ctakagtatc aagctgtagc      1260
     aagstggtta gatatttcaa gaagtctgga tcaaacgcct cttttggact ctccawaaaa      1320
     agttactgtc caactaggtg gaacactgta ttctacttag taagatcggt agaggttaat      1380
     tgggttggaa tttcaaaaca cttgaaggag aaawaagaag ttcacagaat cgacaacttg      1440
     aatgtaaaca atttgagtgm aatttccagc cttttggaag tgwttgaggg cgtatcaaaa      1500
     aaactagagg ccagcaaacg accaactttg cacttagtcg taccaaacat aaaaaaacta      1560
     caaagaacat gccttcctga cataaatgat agcaaaatta ttgaactttt taaatccgct      1620
     ttgaacaacc aacttttaga aacagtagtt ccaaatttaa gtaaatatca taatctagca      1680
     cttcttcttt ttccaccaac caacaaacta ctacaatttt ctactacaga taaagactca      1740
     awaattaacg actgcaaaga cataatgaca acttamattt ctggtaacat ttcaaaagaa      1800
     tgtgaagata caatctctcc tattgatgac gaatttgcgg aaatgcagat caagtggaga      1860
     gtgaaatcag aagctattca aacacaaacg tgatttactc gccagagttc aattgccttg      1920
     aatggwggaa stcccaaaag catatttttc ctcttttgta caaaacaagc tgcaaaattt      1980
     tgtgtatacc aggtagcagt gctgcatccg aaagagtgtt ttcagamgca cgaaacttaa      2040
     taacagaaaa acgttgttta attgccacta acgcggwcag cattaacaaa attatgtttt      2100
     tacacgccaa tataamtaaa tctttaacaa ttaaaaaaaa tgtttttttt gwatttttkt      2160
     wactttaata ttatcaattt atgattttgt tatatttaga tgcattacaa gccctgtcct      2220
     ttgatatttt ttattwtaga attaactcga atgaactcag tcaaaactgt cattttgttt      2280
     cattccmatt cgggcgatat agcttgaatg wtgtgagact gagtmtaagg tgttcattca      2340
     aattcactca aattctattg aagtttcact cattcgcact cattcataag gaacatgaat      2400
     gattcatagg gcgatttgaa tgcattcatg cagacctcta                            2440
//
ID   hAT-35_LMi  repbase;    DNA;    INV; 2553 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2553
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3322-3322 (2014).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1033..1191,1195..1389,1377..2117)
FT                 /product="hAT-35_LMi_1p"
FT                 /translation="MEQSCFCGYRRRSGYGWTKYRFCGTFKGDAKIVTRST
FT                 SDFCYSLHSAPGEFMRECELRDVMGVVTHTMNFIHSHALKHRQFKTFLEVW
FT                 KAVMVMYRTKEIRWLSQGKVLEKCFEFGVKVRSEIETFMDMCGKPIAELKN
FT                 EQWTADLAFLCDITHHMNVLNLALQGKSMLISEMYDCIQAFKMKLSLWNRQ
FT                 LGNGNTAHFSKLSSLTMRPEQNYQQYQTILLDLLREFEIRFQDLVKLNEKF
FT                 NVFSLPFSVDVDSVEAELQLELIDLQCDRQLRDKFNNKVSLLDFYKNFPQQ
FT                 KFPRLHKSAAVIISMFGSTYLCEQLFSAMKRRKSSHRGSLADVNLKACLRI
FT                 CSTQKVVPDIDTLVKRKISNIH"
XX
SQ   Sequence 2553 BP; 746 A; 520 C; 573 G; 714 T; 0 other;
     caggcctgcc caggaggcgg ctagacgagc acgagcgctc ggctcgctcg ctgcctgggc        60
     cgtgagcgct cgcggctgaa tgggggtgct caggcgtcgt gacgtacgca gcgcagggga       120
     ggtgtaaaca ggcgctgtct tcacacgact aagcacaacg tcgttccggc ttagctttag       180
     atgcgagcgc gtatgcccac cacgcagtac ataacgtaca gggcacctct tttcacgtcg       240
     aagaaattta gtacgatggc ttcaaagcga aaagcagaca catcaacgtc aatgtacaac       300
     acgtcagtgc aagaagcgta tatgtttctt atatgcgagt gtctgaaaat gcttagcatg       360
     cttcaaaatt cttaacacaa cgaaaaaatt taatttacaa cggcattaca ataccttcca       420
     tgcgaaagat tatgggcact tgcaagatga agagcggaaa gcggaggtcc aaagattaaa       480
     gaacatacta ctaacatatt agttgtggtg caaaacaaaa aataaaaaca aacaagggct       540
     gaataatttt tcaccaacat ttttactatt caaatgtatc tttatttcca ggaggaacac       600
     tcaacaaacg aatctgcagt tcgagctagt taccacattg ctttccagac tgccaaagca       660
     ttgcgcagtt tcacagaagg cgattttata aagacatgtt taatatctgc tgttgagcat       720
     atagctcctg agagactcga agcgtttcag gcagtttctc tctcgttcaa ctgtttgctg       780
     cagaattcaa gatatggcta acaaaatttc agagaaggta atgattcttg caaaaaactt       840
     tattgcatat tctttggcgc tggatgagag cacagacgtt tctgatactg ctcagttggt       900
     gatttacatt cgggagtaga tagtagtctc gtcgtcacag aagagctact tgaattagtt       960
     ccaatgaaag acactacaac aggggcagat attttttcgc gtgcaagaaa gtgttgacaa      1020
     tatgggcctg caatggaaca atcttgtttc tgtggctaca gacggcgcag cggctatggt      1080
     tggacgaaat atcggttttg tggcactttt aagggagatg ctaaaatcgt tacccgttcc      1140
     acatcagatt tttgctattc attgcattct gcaccaggag aatttatgcg ctaagagtgt      1200
     gaactgaggg acgtgatggg tgtggtgact catacaatga attttatcca cagtcacgct      1260
     ctcaaacatc gccagttcaa aacctttttg gaagtctgga aagcagttat ggtgatgtac      1320
     cgtaccaagg aaatacgttg gctaagtcaa ggaaaagtcc ttgaaaagtg ttttgagttc      1380
     ggagtgaaat agaaacattt atggacatgt gtggtaaacc tatcgcagaa ttgaagaatg      1440
     aacagtggac agcagatttg gccttcctct gtgacatcac gcatcatatg aatgttttga      1500
     atttggctct gcaaggcaaa agtatgttaa tttcagaaat gtatgactgc attcaagcct      1560
     ttaagatgaa actctcattg tggaataggc agctcggaaa tgggaatact gctcatttct      1620
     cgaagttgtc atctttaact atgaggccgg aacagaatta tcaacagtac caaactattc      1680
     tccttgatct actcagagaa tttgagatcc gtttccagga tttggtgaag ctaaatgaaa      1740
     agtttaatgt attttcactt cccttttcag ttgatgtgga cagtgtggaa gctgagctac      1800
     agttagaact tatagaccta cagtgtgaca ggcagttacg tgataaattt aataacaaag      1860
     ttagtctgtt ggacttttat aaaaactttc cgcaacaaaa atttccacga cttcacaagt      1920
     ccgcagccgt gattatatcg atgtttggat ccacgtactt gtgcgagcag cttttttctg      1980
     caatgaagag gaggaaatct agccacagag gctcactggc agacgtgaat ttaaaagctt      2040
     gcctccgaat ttgcagcact cagaaagtgg ttccggacat tgatacttta gtaaaaagga      2100
     aaataagtaa tattcattga tatcatgtat ttttatcttc aaggtatgaa taaaaatgat      2160
     ttgcaattat aagttaaaat tttgtccaaa catggtgtac attggtcctg caaaatatgt      2220
     ttcttagctg tatcatgttc ttcccttcat caaactgaga tgtacgtttc atttaattgt      2280
     cgtttctctt taatacaaca gtttcataca attaatttgc acagaatgga ttactcagcc      2340
     accgtgaagt gttacatctc cgaagaacat gacattagtg gccgtagaat cagactggcc      2400
     gacagttctc cgttgcattg ttgttgtggg attcctgcct cccctcgctg cccctcacga      2460
     ctcgtccgta ccatcagccg cgcgagccgg ccgacagctc actgctgtgg cgcgagcgga      2520
     gccgctcctc gagcagatcg ctgagcaggc ctg                                   2553
//
ID   hAT-36N1_DTa repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-36N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-951
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6244-6244 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 951 BP; 318 A; 163 C; 192 G; 278 T; 0 other;
     tagagccctg cacgagtaga gtttaaaatc agctctgagc ttgagcttga gctgtttgtt        60
     tgtgactttg gaatcatagg tcatgggatc atagaatcat cgagtaagag ctcctcccat       120
     gagcctatga ttccaagagc cctttcaaac agtttggctc gagtagctca tgtcaaaaaa       180
     acaaaccaaa caaacagctc acgttattcg aacagaaata gctccaaggg cttaatgtca       240
     aacatttaca ataaacaaat atacagtatt ttatttacaa aaagagaaaa cgattataag       300
     agaatcatgg ccgaccgcca gtactttttt ttagcaaact cttaagaaat cgcggtccgt       360
     agagggtaat tttttttagc gattcttggg gggagaaacg ttttattatt cactagtaga       420
     agcagcaaaa taattatcct cggtggaccg cgatttctta agaatcaaca aaaagaagag       480
     acggttacaa gaaaactatg gtcgacaagc aattttttgg caaactgtta aaaaaaattg       540
     cggtccatcg agggtagcta tttatttata gcgattcttg ggcggagaaa cgttttatta       600
     ttttttaatt tttaacaaag ataattgttg aagaggacaa catattaaat cgagttgatc       660
     ttaagatatt gcggttgcat aaaaagccac aaaaatcctt catccaaatt aatgcaaaat       720
     aaaaaaaaaa aggttttttc agctccggtc gaaaaactga gctactcgag cccatgattc       780
     catgagctta tgattccatg agccctttgt tttcgaacga gtcgagtagc tcattgtaaa       840
     aatttaggag ctgagctatt cgatttgaac atttttgtga gctgatttac tcgagctgtt       900
     ttttgaaatg ggagaaaaag ggctctacga gtatactcgt gcagggctct a                951
//
ID   hAT-36N1_LMi repbase;    DNA;    INV; 2883 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 19.12, Created)
DT   17-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-36N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2883
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3323-3323 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2883 BP; 914 A; 570 C; 608 G; 791 T; 0 other;
     tagagctctg catttcgatg aaaacaaccg ctcgagcatt tcccgtttgg tgccgctgct        60
     cgacggctgg ggtaggccca cgctgcggca cggctgcggc cgtctaatgc cccatgtggc       120
     cggtcgccct ccgcctctcg gttaccggcg ggagtgtcga gcactgccgg gcgctcgagc       180
     gcgctcacag tctcggccgg tgacagcgcg accgccgcgc gctcaacact gcggaatcgc       240
     attagaaacc gacctggctt tgagcagcgc agacagcgtt atggatcaac gaactatagg       300
     tcgtaaaggc tccattcatg aaacaaaaag aagtattgtg gagagaatta ggagcggctc       360
     gttagtcctg aagaagaaag acatgtcgga agaggagtcg aaaagtgaag cttggaaatc       420
     ttttgcactt gtagtggatc ctgtcacaca ggtttctgct ggtttcgtgc aatgtaccac       480
     atgcgatact atactttcgt accagtcaag cacaacaggt atgattcggc actgcaaaag       540
     taaatgcgga gcagaattac accgaccact tgcagtacca agtagcataa agaaagttct       600
     tgttgatagg ttggtcgata tgggcggaat agatttgcta ccattaaata cttgtagtaa       660
     gattggcttc aagaattatt cgcaggagct catcaatgtt cgcgccacgt atggcaaagt       720
     caatatagaa gatgttcttc cgcaccctac cactgtatcg cggcatatta aagaaaaggc       780
     cgacaaaata cgggtgacaa tggtgcccaa gctaatatgt gctttaaaga acaaaatgtg       840
     ctctttaaac gctgatctgt ggtctgataa ctacaaggag atacgctgca cataacgcac       900
     gattagacta ctgtattacc gtttgtctac caaaaggaac aaaatactat atacagaaat       960
     tacagttttt aacgttgcag ttactggaag acatgatcac ctcaatggtc gaaactccag      1020
     tagtttgcaa aatatttaaa aattttcttc ttgagacagg tcttgttgaa ttttatactt      1080
     tctatgagtt ttaccatttt tattttaagt cgtatgtatt ccagaaaatt ccccatgtca      1140
     catacaataa tggggaattt tctggaatac atacgactta aaataaaaat ggtaaaactc      1200
     atagaaagta tattaaaatg tttaatgttt gtaaagttca tgggacttaa ctgcgggatc      1260
     atcattccct aaacttacaa ctatcaaaca tcaaatgtga catatacagt tgtagtattt      1320
     gggttataga actgatagta aacaacgaaa gacatttgta aaagaaataa gtaagttgtt      1380
     aatatgaagc ggtggtctct catctctgat atacattaat gacttgccat tctacattga      1440
     tgaagattag ttctttttgc tgatgataca agtatagtaa tcacatccaa aaaacgagaa      1500
     ctaactgatg taatcgtaaa taacgtcttt cacaaaatta ttaagtggtt ctaagcaaac      1560
     ggactctcat taacttttga taaaacacag catatacagt tccgtacagt aaatggcaca      1620
     actccagtaa taaatataga ctttgaacag aagtctgtag ctaaggtttt tcgaaattat      1680
     tcgttcgttt tgaagggaaa ccagagtttt tcaaaatttt tagatgtgtg aattaatgag      1740
     agattaaact tgaagcaaca cattgattgt ctgctaaaac gtttgggttc agctacgtat      1800
     gctgttaggg ttttagcaaa ttttggcgat aagaatctca gtaaaacagt ttactacgcc      1860
     tattttcatt tactgctttc gtatggcatc atattctgag gtaattcact attgagtaaa      1920
     aaagtattca ttgcacaaaa tcgtgtaatc agaataatta ctggagcgcg cccaagatcg      1980
     ttctggagac atctatttaa ggatttaggt atcctcacag ttacttcaga gtatatatat      2040
     tcacttatga aatttgttgt taattatcca acccagttca cacacatgtt cacatgtttg      2100
     taaatctatc ggactatact gcttggttat tagtccgtag cttgcaaaca atttaaacta      2160
     aggtaaacta acctaaggat aacacagaca cccatgcctg agaggggacc cgaacccaga      2220
     tggcgaacgg ccgtgcgcat cccgcatggc taatccgccg cggcaaaccc agttcaaaag      2280
     taatagcagt gtgcataggt ataacaccag gagaaaggat gatattacta tgcagggtta      2340
     aatctcactt tggcacagaa aggggtgaat tatgctgcca caaaagtctt cggtcaccta      2400
     ccaaacagca tcaaaacctg acagatagct aactagcatt taaaaattta ttaaaagaat      2460
     aactgaatga caactccttc tactcaatgg atgaattttt agatataaat tagtaaaact      2520
     aaaaataaaa aataataata aaaagaaaaa taatacaaaa tatatttgtg tcatataaca      2580
     ttttgtgtaa tgtaatatct tgtacagaca ccttttatta cactgacaag ttacacatta      2640
     ttacgaagtg tcgtattcat gatctatgga agaagtatta atctaagcag tgtgacgcgg      2700
     tgcagctcgc tggcgctgag tgcgccggtt actggcgacc gaccgagcgt tcggcgcgct      2760
     cggccgagcg ctggcgatcg gttgcccgca accggttaaa gaggacgctc ggccgcgtac      2820
     tcccgagagc cagaggggcg agcgggactc gccggtaaaa atcggacgta atgcagacct      2880
     cta                                                                    2883
//
ID   hAT-36_DTa  repbase;    DNA;    INV; 2830 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   16-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-36_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2830
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 2830 BP; 969 A; 526 C; 575 G; 760 T; 0 other;
     tagagccctg cacgagtaga gtttgaaatc agctctgagc ttgagcttga gctgtttgtt        60
     tgtgactttg gaatcatagg tcatgggatc atagaatcat cgagtaagag ctcctcccat       120
     gagcctatga ttccaagagc ccttttaaac agtttggctc gagtagctca tgtcaaaaaa       180
     acaaaccgaa caaacagctc acgttattcg aacagaaata gctccaaggg cttaatgtca       240
     aacatttaca ataagcaaaa gtgcagtgtt tgtttctcgt tccaagctaa gcacgttctc       300
     gtaagccaaa caaaaatttt gcgaccgaaa aatttataaa aaagatttgg tttaagtgtg       360
     tatttctcgt tcgaagttaa gtgcgttctc attagccaaa tatttttttc cgaccgaaaa       420
     ataaagggaa aggtttcggg atggcttcag acccacaagt aagtaccgcg taacaatatg       480
     aaaatttata acaaatttaa acgcgcacag ttaagtttgg ataaaatcaa ggcgatgata       540
     ttgtcgggtg tgtgcataat taccaaaaag cgtgggagaa gcgaggtctg ggaaattttc       600
     ggcaacgttc gtcataagga gggagatgag attccaaacg tggttgcatg caggaattgc       660
     tcttgtgttt ttaaatttaa caacacaaca tcaaatttgg ccagacacaa atgttttaaa       720
     gcggttgggt acaaggagga aaaccagcca gaagtaaaaa ttgatcaaga gacaaagtca       780
     aagattgttc aagtagcagc agcatggacc gtggagaact gccggccttt tgagctgctt       840
     gcagactctg gcctcgaaaa atttgctaac gccatgatag ggctcggtgc caaatttggc       900
     ccaaacatca ctgcaaagtc cgtgcttccg cacccaacta cagtgtcaag gcgaatttcg       960
     aaattatatg cagaacatta taaccgggta aaagatgaga ttgcccgaaa caggaagaat      1020
     gggatcggct atagcattac aacggatggc tggaccgatg atgttttcaa aagctcatac      1080
     atttctgtaa ccattcatta cgtttgtgac ggaaaaatgg tgagccgcct tctttctgtg      1140
     gaaagtatga atggaaaacc atcaaccggt ataaaaacat aaaatttaca ctccagttat      1200
     aatctgtaat taagttgact tatttcccag gtgcaaatct aaagaaaacg ttgaatagct      1260
     gcctccaaga atatgagtgc aacctttctg cagataatgc aatcattgtg acggaccgcg      1320
     gtgcaaatat ggttgctgct tataaattta tgaggcacat atactgcatt aaccacttgc      1380
     ttaacaatgt gattgacaaa acctttaaca aagttcctga actggtcaaa aatttaaata      1440
     atgcttccaa attagtcaag tatttcaaga aatcgggaca gaacaccaat ttaaagtcgt      1500
     cgctgaaaag cctttgccct acccgctgga acacagcgtt ttacatgctg cgctccattc      1560
     aggatggatg ggcagaaatt tcctcaattc ttatcgaaaa gaaagaggag tcccgtcttg      1620
     gcgatttaaa tctcaacaac ctgaaagaac taacgcaaat tctagaacat ttcgaaaagt      1680
     cctcaaaagt tttagaaagc gaaaactacc caaccttaca catggtcatt ccagaaatat      1740
     gaaactattc attactggac aagacgaaaa cgaagatgta ttacctaaaa gcaaaagcaa      1800
     gtttgcagac ttcattagaa acttctcaaa tgaaacggat gaagacaaag taagcaggga      1860
     aatgacggct tacttagcca ccattacaat gtacacagaa gactttgagc ccctaaagtg      1920
     gtggaacgcc aataaaaatc agtttccact tatcttcaag acaagctgcc aaattttggg      1980
     gactccagcc agcagtgctt cgtcagaaag atgcttttca aaagcaggaa gccttatttc      2040
     agagaaagga aacgccatag ctaccaatgg acaaatggtt aaggaaataa tgtttttaaa      2100
     tagtaacatt aataaatcat aaaataacta cgagaaacat ttccatttta tttacaaaaa      2160
     gagaaaacga ttataagaga atcgtggccg accgccagtc ctttttttta gcaaactctt      2220
     aagaaatgcg gtccatagag gttatttttt tagcgatttt ttggggggag aaacgtttta      2280
     ttattcacta gtagaagcag caaaataatt atccccggtg gaccgcgatt tcttaagaat      2340
     caacaaaaag aagagacggt tacaagaaaa ctatggtcga caaacaattt ttttttggca      2400
     gactgttaaa aaaaaattgc ggtccatcga gggtagctat ttatttttag cgattcttgt      2460
     gcgcagaaac gtttcattat agtataattt ttaacaaaga taattgttga agaggacaac      2520
     atattaaatc gagttgatct taagataatg cggttgcata aaaagccaca aaaatccttc      2580
     atccaaatta aagccaaata aaaaataaaa ggttttttca gctccggtcg aaaaactgag      2640
     ctactcgagc ccatgattcc atgagcttat gattccatga gccctttgtt ttcgaacgag      2700
     tcgagtagct cattgtaaaa atttaggagc tgagctattc gatttgaaaa tttttgtgag      2760
     ctgatttact cgagctgttt tttgaaatgg gagaaaaagg gctctacgag tatacccgtg      2820
     cagggctcta                                                             2830
//
ID   hAT-36_LMi  repbase;    DNA;    INV; 3388 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 19.12, Created)
DT   17-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3388
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3324-3324 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           300..1394
FT                 /product="hAT-36_LMi_1p"
FT                 /translation="MDQRTISRKGSIHETKRCIMERIRSGSLVLKKKDMSE
FT                 EESKSEAWKSFALVVDPVTQASAGFVQCTTCDTILSYQSSTTGMIRHCKSK
FT                 CGAELHRPLAVPSSIKKVVVDRLVDMSGIDLLPLNTCSKIGFKNYSQELIN
FT                 IGATYGKVNIEDVLPHPTTVSRHIKEKADKIRVTLVPKLICALKNKMCSLD
FT                 ADLWSDNYKKRNFLTVTSHYVNDEWQLETLVLITTEFPDVPKTGENIRHEI
FT                 EERILELEITKNDLSKYYFVTDQGANMKKALESYDRLPCFDHCLMTALRHT
FT                 FQETFLEDEAPEILSCLLSARGIVGYLKRSGHSGRLRHSVKQEAVTRWNRI
FT                 LLMLNSVISQIDDIRYDEKRIV"
XX
SQ   Sequence 3388 BP; 1063 A; 690 C; 718 G; 916 T; 1 other;
     tagagctctg catttcgatg aaaacaaccg ctcgagcatt tcccgtttcg tgccgctgct        60
     cgacggctgg ggtaggccca cgctgcgaca cggctgtggc cgtctaatgc cccatgtggc       120
     cggtcgccct ccgcctctcg gttaccggcg gaagcgtcga gcactgccgg gcgctcgagc       180
     gcactcacag tctcggccgg tgacagcaca accgccgcgc kctcaacagt gcgggatcgc       240
     attagaaacc gtgtgtaaac tcagttgacc atctggattt gagcagtgaa gacagcgtta       300
     tggatcaacg aactataagt cgtaaaggct ccattcatga aacaaagaga tgtattatgg       360
     agagaattag gagcggctcg ttagtcctga agaagaaaga catgtcggaa gaagagtcga       420
     aaagtgaagc ttggaaatct tttgcacttg tagtggatcc tgtcacgcag gcttctgctg       480
     gtttcgtgca atgtaccaca tgcgatacta tactttcgta ccagtcaagc acaacaggta       540
     tgattcggca ctgcaaaagt aaatgcggag cagaattaca ccgaccactt gcagtaccaa       600
     gtagcataaa gaaagttgtt gttgataggt tggtcgatat gagcggaata gatttgctac       660
     cgttaaatac ttgtagtaag attggcttca agaattattc gcaggagctc atcaatattg       720
     gcgccacgta tggcaaagtc aatatagaag atgttcttcc gcaccctacc actgtatcgc       780
     ggcatattaa agaaaaggcc gacaaaatac gggtgacatt ggtgcccaag ctaatatgtg       840
     ccttaaagaa caaaatgtgc tctttagacg ctgatctgtg gtctgataac tacaagaaga       900
     gaaatttttt gactgtgacg tcgcactatg tgaatgatga gtggcagcta gaaacgcttg       960
     ttctgataac aaccgagttt ccggacgtac ctaagacagg agagaacata cggcacgaaa      1020
     tcgaagagcg gatacttgaa ttagaaatta ccaagaatga tctttcgaaa tattactttg      1080
     tcaccgacca aggagctaat atgaagaagg cacttgaatc ttacgaccgt ttgccttgct      1140
     ttgatcactg cctgatgact gcacttcgtc atacatttca agagacgttt ttagaagacg      1200
     aagcccctga aatcctgtcg tgtctactat cagcaagagg tatagtaggc tatttgaaga      1260
     gatcgggcca ctcggggcgt ctgcggcact ctgtgaagca agaagctgta actcggtgga      1320
     accgtatact gttaatgctc aattccgtca taagtcaaat cgacgatatt cgatatgacg      1380
     aaaaacgaat tgtatagtca tgattcactt gtaaagttat tgacagatca taattttttc      1440
     ataagttaac gtttgtagaa cgaaatttcg tattactttt aactcagtca ttccttctcg      1500
     atcctgcatt caatattagt acaatgtata cgtggccgag tttggagata cactgcacat      1560
     aacgcacgat tagactactg tattaccgtt tgtctaccga acggaacaaa atactatata      1620
     cataaattac agtttttaac gttacaatta ctggaagaca tgatcacctc aatggtcgaa      1680
     actccagtag tttgcaaaat atttaaaaat gtttaaatgt ttgtaaagct catgggactt      1740
     aactgcgggg tcatcattcc ctaaacttac aacctcaaac atcaaatgta acatatacag      1800
     ttgtagtatt tgggttatag aactgatagt aaacaactaa agacatttgt aaaagaaata      1860
     agtaagtggt taatatgaag cggtggcctc tcatctctga tatacattaa tgacttgcca      1920
     ttctacattg atgaaggtta gttctttttg ctgatggtac aagtatagta atcacatcca      1980
     aaaaacaaga actaactgat gtaatcgtaa acaacgtttt tcacaaaatt attaactggt      2040
     tctaagcaaa cggactctca ttaacttttg ataaaacaca gcatatacag ttccgtacag      2100
     taaatggcac aactccagta ataaatatag actttgaaca gaagtctgta gctaaggtag      2160
     aattttcaaa attattcgtt cgttttgaag ggaaaccaga gtttttcaaa atttttagat      2220
     gtgtgaattg atgagagatt aaacttgaag caacacattg tttgtctgct aaaacgtttg      2280
     agttcagcta cgtatgctat tagggttttt gcaaattttg gcgataagaa tctcagtaaa      2340
     ttagtttact acgcctattt tcatttactg ctttcgtatg gcatcatatt ctgaggtaat      2400
     tcatcattga gtaaaaaagt attcattgca caaaagcgtg ttatcagaat aattgctggg      2460
     gcgcacccaa gatcgtcctg gagacatcta tttaagaatt tagatatctt cacagttact      2520
     tcatagtata tatattcact tatgaaattt gttgttaata atccaaccca gttcacacac      2580
     atgttcactg tttgtaaatc tatcggactc aactgcttgg ttattagtct gtagcttgca      2640
     aacaacttaa actaaggtaa actaacctaa ggacaacaca cacccatgcc tgagagggaa      2700
     cccgaacccc agatggcgaa cggccgtgcg caccgcagca cggcgcccca gtgcgcacgg      2760
     ctaatccgcc gcggcaaacc cagttcaaaa gtaatagcag tgtgcatagg tataacacca      2820
     ggagaaagga tgatatttac tatgcagggt taaatttcac tttggcacag aaaggggtga      2880
     attatgctgc cacaaaagtc ttgggtcacc taccaacagc atcaaaacct gacagatagc      2940
     taactagcat ttaaaaataa attaaaagaa tttctgaatg acaactcctt ctactcaatg      3000
     aatgaatttt tagatataaa ttagtaaaac tgaaaacaaa aaaataataa ataataataa      3060
     aaagaaaaaa taatacaaaa tatatttgtg tcatataaca ttttgtgtaa tgtaatatct      3120
     tgtacagaca ccttttatta tcctgacacg ttccacatca ttacgaagtg tcgtattcat      3180
     gatctatgga acaagtatta atctaagcag tctgacggcg cgctggcccg ccggttactg      3240
     gcgaccggcc gagcgttcgg cgcgctcggc cgagcgctgg cgatcggttg cccgcaaccg      3300
     gcggagagga cgctcggccg catactcccg agagccagag gggcgagcgg gactcgccgg      3360
     taaaaatcgg acgtaatgca gacctcta                                         3388
//
ID   hAT-37_DTa  repbase;    DNA;    INV; 2476 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-37_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2476
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6185-6185 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 2476 BP; 868 A; 453 C; 446 G; 708 T; 1 other;
     tagagccctg cacgagttca attgtaagtg agcacttcca agttgacttg aattgttcac        60
     tcactctgac ttacaaaaat atttccaaac gaatcaaccc gagtgaagga aatttcaagt       120
     caactagctt caagtcactg ttaggcctaa acgagtgcga gtgagtgcga gtggcccgat       180
     tgacttgaat tcagatcgag cactcgaaca cttaaaagtc atatggaaat tcgaaaattt       240
     gaaaaaaatt tagtataaat tttagttctg ctctttcctt tcgactgact tgttgtgctt       300
     gtgattttct aaaataatat tttcatctcc tttggctatg gctcaagtcg taagttttga       360
     aatacctatt caaggtttta taataataat aacatcataa taatgaagag aaaagaaaac       420
     gatgatatca acgaaaaatt aaagcaaggt gagtatgaaa tcataaacaa gcgaggacgc       480
     agcaaagtct gggaaacttt tggaatggtg caggatgcaa agaacaatgt gatcgaaaat       540
     gttgtggctt gcagagtttg tttgagtgtg ctgaagtata caggatgcac aacgaatatg       600
     gttcgtcata aatgttatgt ctcagcgtcg aagtcattaa caaacttgag cgacaccgaa       660
     gccaatgttg attcggaaac gaagaaaaaa attatcaatg ctgctacgga gtggacagtc       720
     aaaaattgcc gatcgttcaa caccatccaa gataagggac ttaaagattt attttccata       780
     tttgtaggag taggagctcg atttgggcaa aatattgata tggacaaaat tatcccgaat       840
     ccgaccactc tatcaaggaa tatttctcag atgtacgacc taaaaagcca tgaagtaatt       900
     agcgagttgg ctagggtgcg cctttccgga tatagcatta catcagatat atggacggac       960
     aactatttga aacgttcata cgtatcagtg actggccact acattttaga cggacattta      1020
     atatgccgac ttttatcagt taaatcaatg gatgaatgtg cgacaggtat gcgtatgctt      1080
     ccattttttt aatgcaatct aatttgttat gctacttttt aggacctaat ataaagacga      1140
     aggtattgga agaattgcgc aaatttaatt gcaacttgga tgaggataat ggcattgtca      1200
     taactgacag aggcgcaaaa tgaaaagggc atttcgtgaa aatacccacc tccactgcat      1260
     taaccatttg ctaaataatg tagtggaaaa atccattgcc gagtccaaag atattgacct      1320
     aattttaacc atttcgacca aattagtaaa atattttaaa aaatcaggaa agaactcaaa      1380
     actggaccaa tcactaaaaa gcttctgccc aacaaggtgg aacactattt attacacgct      1440
     ttcatcaata gcgaaaaatt gggacaagct aacggaaata ctcgaagact ctawtgaaga      1500
     acataggatt tccgggctga gcctttccag cctacaaggc attaatgaaa ttctcaaaaa      1560
     aattcaagta gcttcacagg agttagaggg tgacacttat ccaactcttc atcttgtgat      1620
     accacatatt gaatttttaa aaaaacaatt tgaaaccgac acaaacgaca ctactataac      1680
     aactcaatta aaaacttctt tgaaacgtta tcttgtgagc atcgtagacg aacatataac      1740
     aaaatttcat caactggcct ctttctattt cctccaacaa acaagctcat ctcatttaat      1800
     caaaatcaaa aggactcaac aataaacttt tgcaaagaat taatgaaaac ctacaaggag      1860
     ttggaggcac atgaacctga aacagctgag caaacatctg aaaacaatac aatattttca      1920
     agtttcattc aaaatttttc acaggacacg gatgaacatc tcatcgaaga tgaaattttg      1980
     ctttaccaat ccacaaaagt atcgctaaaa aaagactata atgtattgca atggtgggaa      2040
     gaaaacaaag gacagtatcc tcttttatat aaagtgagcc tcaaaatttt atgtgttcca      2100
     gctagcagtg catcgtcgga aagggcattc tcacaggccc gacagcttat ttccgaaaaa      2160
     aggaccggaa ttgcatcttc aagcatcaaa attaataaaa ttatgttttt gaactcgtat      2220
     tttcggaaac caaatgttat gtaaatacaa tgaaatttaa aatagtatga ccacatcaaa      2280
     ccttctttgc ttaacaattc aattgactcg aattttggat tactcgcact cacttgatcg      2340
     tttgtttcaa tcgagtgctc gagtttttat gagcaaggcc taccacttgc ttgttcgaag      2400
     tttctaagta agtgaactcg cactctaaaa ctctattttg ttaacatgac ttgtttgtca      2460
     gttcgagtga actcta                                                      2476
//
ID   hAT-38_DTa  repbase;    DNA;    INV; 2759 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-38_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2759
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6218-6218 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(347..776,833..1242,1446..1936,2443..2584)
FT                 /product="hAT-38_DTa_1p"
FT                 /translation="MCRDPKDSTKAYCXYCKCXLNSKVDQIRAHMITKKHV
FT                 QNALPFAQSNKINFQPKPKDDVCVQEAALSMYIAQHSSIEPVGHLTDICQH
FT                 HFGAALIQLRRTKCTNIIKHVLAPHFQEDLRNDIGNSKYSLLIDESTDISI
FT                 TKLLGVAVIYYSVEHKKIVSTFLTLISIENGTASCITECLRAELLDLKLPL
FT                 KNLIGIGTDNANVMIGKKGGVYAELKKEVPNLMLIKCVCHSVQLAVNAACK
FT                 QTLPQTLEFLVSETYAWFCKSSSRQISYKNLYESLNNDEAPLKIPRVCDTR
FT                 WLSIECAVKRILQQWNELKTHFNHAALNENCHKAEILRDLYNDEENLAYLV
FT                 FLRPILEDMQRINKSFQSRDSNPTKLLRDLIFGINTLKQKVIAPDVDVDIF
FT                 KDDFPRFVNRNLYLGYEFESKVQELKDSKYRIRTKCIDFVICLIHQLIQRF
FT                 GLRRHGSCCHNYNIPNKYLKMIGTKAAYSEEATEDDEIIDSAIKLI"
XX
SQ   Sequence 2759 BP; 891 A; 478 C; 477 G; 902 T; 11 other;
     cagtgctgcc attttgtcct ttttccggac agatctgtcc ttttttaaac tgcctcagcc        60
     ggaaaaaaat caaaacatcc cctatccgka aatctgtcct tttttttctt aacaaactga       120
     atattttttt tttcwaaatc catactattt tattcttggt cacattaaat aaacctttga       180
     gtatcgttcg atagttctgt aaagctatcg gtggattgtt tggtgctgta gtatggtcac       240
     acwactattg tagcgtccct gttttcgtcg actttcaaga tgcctaagga aatctacaaa       300
     caaaagtttc gggaatcgtg gctawcaagc agagtttaag aattggatgt gtcgagatcc       360
     caaagactcc acaaaggcat actgcamata ttgcaaatgc agmctgaatt ccaaagttga       420
     tcaaattcgt gcgcacatga ttacaaaaaa acatgtgcaa aacgctttac cttttgcgca       480
     gtctaataag attaattttc aaccaaagcc gaaagacgat gtttgtgtgc aggaggcggc       540
     gttatcaatg tatatagctc aacatagttc tattgaacca gttgggcatt taactgatat       600
     atgccaacat cattttggcg ccgctcttat tcaattgcgc cgcacaaaat gcaccaatat       660
     aataaaacac gttctagcac ctcatttcca agaggatttg cgaaacgaca ttggaaattc       720
     aaaatatagt ttgttgattg atgaatctac agatataagc ataacaaaac ttctcggtaa       780
     gacaaaagcc attgcttctt agaacttttt tttaatatgt ataacttttt aggtgttgct       840
     gtaatttatt acagtgttga gcacaaaaaa attgtgtcaa catttttgac tttaatttca       900
     attgaaaatg gaactgcttc atgcatcacc gaatgcctgc gtgcggaatt gctggacctg       960
     aaactaccat taaaaaacct tataggcatc ggaacagaca acgcaaatgt catgattggc      1020
     aagaaaggag gggtctacgc cgaactcaaa aaggaggttc caaatttaat gttaataaag      1080
     tgtgtgtgtc actctgtgca attagctgta aacgctgctt gcaagcaaac attgcctcaa      1140
     actcttgagt ttctagtgag cgagacttac gcgtggtttt gtaagagctc cagcaggcaa      1200
     atttcttata agaatctata cgaaagtctt aataacgatg aggtaaaacc ttaaatgata      1260
     tgggtagtaa aatttatata tgttttaaca ctccaatgtg tatctttttc agataactaa      1320
     taagtcctcg ttttagtact aattacctat taataacttt ggatatgaag tgtgtgtttg      1380
     tcccagtagt caattgaata tattatttac ttataattaa taagaaaata ttgtawttta      1440
     taaaggctcc actaaaaatc cctagagtct gtgatactag gtggctatca attgagtgtg      1500
     cagttaagag aattctacaa caatggaatg agttaaaaac acattttaac catgctgctt      1560
     tgaatgaaaa ttgtcataag gccgaaattt tacgagattt atacaacgac gaagaaaatt      1620
     tagcatatct ggtgttcctt aggcctattt tggaagatat gcagaggata aataaaagtt      1680
     ttcaaagccg cgactctaac ccgacaaaac ttctgaggga tctcattttt ggaatcaata      1740
     ccttaaaaca aaaagttata gctccagatg tcgatgtcga tattttcaaa gatgatttcc      1800
     cccgctttgt aaaccggaac ctatacttag gctacgagtt tgaatcaaaa gttcaagaac      1860
     ttaaagattc gaaatatcgc attcgtacca aatgcatcga ttttgttata tgccttatac      1920
     atcaactcat tcaaaggtaa aattgtattt tttcataatt agtttcacta attttgcttt      1980
     tcacattaga ttgccggaaa attttgcaat tttgcaaaat atagatttgt tttctgtgga      2040
     aaacgtatta aaagcgcaca agccttgcat ttccagtatt cttgaagtat tccaagttaa      2100
     aagcagtgaa attgataaaa ttatattaca atataataat atcaacctca taaagtggga      2160
     gcatattcag aataccgttc aattctgggc cgaggtattg aattacaagg acgcagcagg      2220
     aaacgaccaa ttttttgagt tggcgaacat tgcaattaat ttgttaacac tgccgtggtc      2280
     taatgctgag gtggagagag ttttcagtca ggtatctctg gtaaagacca agttgcgaaa      2340
     ttcaatgcaa acggaaactc ttaacgcaat tctkktaata aggtatattt gtaattatct      2400
     ttaaccacat ttattataat tgtaattatt ttatgttaaa agatttggcc tacgacgaca      2460
     cggatcatgc tgccacaatt acaatatacc taataagtac cttaaaatga ttggtaccaa      2520
     agctgcatac tccgaagagg caaccgagga tgacgaaatt attgattctg ccattaaact      2580
     aatctaattt ctgtgctata aattmataat ttcaatactt taacataaga aaacattaaa      2640
     ttttgtaatg attaactttt atccgttttt ttgtcctttt ttaatttttt ttgtcctttt      2700
     tttcccgktt tttcttggct gatctgtcct tttttttaag ctgagcgatg gcagcactg       2759
//
ID   hAT-39_DTa  repbase;    DNA;    INV; 3284 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous;
KW   hAT-39_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3284
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (17-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence; 3'-end truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(855..1397,1401..2606)
FT                 /product="hAT-39_DTa_1p"
FT                 /translation="MAKNKDSKDILRRFNDWNKTQVQCQICSRILKKERIY
FT                 NLKKHLADVHKITPDNTSVKTDKYIKKRTIKVEINKQQLIRSYIGLVTENH
FT                 IPFNILDSKNMKIIIEPICQGLNTKSGKQLAFNSQNCKNVLGKVAKNIRTH
FT                 ITEELRNRILSLKIDSATRLNRNIFGISAQFIQNNEIQSRILMTQLKGQNS
FT                 STSKNLAKEILCTLRKFDVKITKLISITSDNGANMIKTTKILSHQSTNNFE
FT                 DEHVVEENNAKYLENLDNFESTKDVYVGGIQICRCAAHTAQLCAIDVTKNT
FT                 NKNKFLLQCRNITKHIRKASNGYSELFDIKKLKLPQLDCPTRWGSTYKMIE
FT                 RLNQAKDILITIQSIDNKTDEENFNFNDALLDFISGYTTSMNPLQKTIIQF
FT                 QSEQLHYGNFYALWLTCKLQTEQIVASNAQNAIITLIGRSLLISINTRNKK
FT                 LLENDGMLACLYLDPRFHHILNAEQKQNGTEFLKTLWKKIIHHDPKLSSKQ
FT                 GNASPLITDNETNSSFDILHNYLSSHLPETPPTAATDVNRKIETLNLSYRK
FT                 ISNVLNFWLERKSIDPELYELSQICFAMPPTQIYIL"
XX
SQ   Sequence 3284 BP; 1255 A; 549 C; 504 G; 976 T; 0 other;
     cagggaccgt aatcattata agttttattt taaacctcac acaataatca ctattcttga        60
     taaaaaaaat aaaactaaaa aataatcatt atttctgatc ggaaaaaata aaactcactt       120
     ggacgccacg tcttttctat accgatttta gtcctataaa tcgaatgcag acgtgccacc       180
     tctaacaaaa aaaaagcttg aacttggact ctgcatcccg ttaaatgtta ttctaatttt       240
     agtcaacatt taacaaaata ccactacttt ttgatgtctt tagttagtcc acttaatcta       300
     aagaagcttt tcctcttgct ctgaagaatt cgggattatt gagaatcgat ttaaatgtca       360
     aacgaactat aagaaaaatg tccttagcta ggaagagaaa gtatccacac aatcagttcc       420
     tcttcttctt aagaattcgc ggtttttgga gaacggattt aaatatccaa caaagtataa       480
     gaaaagcttc gatactgaaa tcgatttttt tagaactgcg aattcttagg aacaagtaaa       540
     actttagatt ttgtgtacca ttctctactt acctaaagcc ctggacttat acgtggtaga       600
     agcataaaag gaagaaattt tattaaaaaa ttaatttctt atggaaaact gtaatatatt       660
     cagtataatg tagctcccag ctctcagctc tactatagtt tttttactat agtaaaatat       720
     ttatttgcta tagtaagatc tagaaaatag ctagagcagc tttgctattg tattcaaagt       780
     gtgttcatat atatagtcat atattatagt cacagcggaa ctctctgctt ctaaagtgaa       840
     taaaaaagaa aaaaatggcg aaaaacaaag attctaagga tattttaaga aggtttaatg       900
     attggaataa aacgcaagtg cagtgccaaa tttgtagtag gattttaaag aaggagagaa       960
     tatacaatct gaagaaacac ttagctgacg tccataaaat tacaccggat aacaccagtg      1020
     taaaaactga taagtacata aaaaaacgaa ctattaaagt tgaaataaat aaacaacaac      1080
     taatacggtc atacatagga ctcgttacgg aaaaccatat accttttaat atattagact      1140
     caaaaaacat gaaaattata attgaaccta tttgtcaagg ccttaacact aagagtggaa      1200
     aacagttagc ttttaatagt caaaattgta aaaatgtgct gggtaaggtt gccaaaaata      1260
     ttcgaacaca tataacagaa gaactaagaa atcgtatact ttcgcttaaa attgatagtg      1320
     caacaagatt aaatcgaaat atttttggaa ttagtgcaca atttatacaa aacaatgaaa      1380
     tacaatcaag aattttatga atgacacagc taaaaggaca aaattctagt acttcaaaaa      1440
     acttagccaa ggaaatacta tgcactttaa gaaagttcga cgttaagata acaaaattaa      1500
     tttctataac atctgacaat ggagccaata tgataaagac tacaaaaata ctttcacatc      1560
     aaagtactaa taattttgag gatgaacatg ttgttgaaga aaataacgcg aaatacttag      1620
     aaaaccttga taactttgaa agcactaaag acgtgtacgt aggtggtata caaatctgtc      1680
     gatgcgcagc acacacggca caattgtgtg cgattgatgt cacaaaaaat acaaacaaaa      1740
     acaaattttt attgcaatgc cgaaacatta ctaagcatat acggaaggct tcaaatggat      1800
     acagtgaact ctttgacata aaaaaactga agttgcctca attagattgc ccaactagat      1860
     ggggctcaac atataaaatg atagaaagac ttaaccaagc aaaggacatt ttaataacaa      1920
     tacaatcaat tgacaacaag acagacgaag aaaattttaa ttttaatgac gcacttttgg      1980
     attttatttc tggctacact acatctatga accccttaca aaagactata attcaatttc      2040
     aatcggaaca actacactat ggaaactttt acgcactatg gcttacttgc aaactgcaaa      2100
     ctgaacaaat tgtggcatcg aacgctcaga atgcaattat tactttgatt gggcggagcc      2160
     ttctaatcag tataaacaca agaaataaga aattgcttga aaacgatgga atgctggcat      2220
     gcctttacct ggatcctaga tttcaccata tattaaacgc tgaacaaaaa cagaatggta      2280
     cagaattttt gaaaacatta tggaagaaga taattcatca tgatccaaaa ttaagcagta      2340
     aacaaggaaa tgcaagtcca ttgataaccg acaatgaaac caactcttct tttgacattt      2400
     tacacaatta tttaagctcc catttaccag agactcctcc tactgcagca acagatgtta      2460
     atagaaaaat tgagacttta aatctatcgt acaggaaaat tagcaatgta ttaaactttt      2520
     ggctcgaaag aaagtcaatt gatccagaat tatatgaact cagccaaata tgctttgcta      2580
     tgccaccaac acagatatac attttgtaat ttattctata caataatctg tacaacctgt      2640
     atctttcata ggtcaccata gaaagagcat tttcatcctt aaaaataata ttggcggaca      2700
     acagaaacag gatgagtcaa aatacattgg aaaacatact tctggtcaaa cttaattcaa      2760
     atcatttaga tgaagctatt caaaatcttc cgttatttga agacaatgat tccgactcag      2820
     gagactcaga tgcagaggca taatttaatt aggattccca atttttccaa attctgaagt      2880
     ttttttctta ctccaactct actggtttga aagtggatcg tagtctgatt gccaatttca      2940
     ttgagaagcg tgatggctgc ctgtgatgga tggcctttga attcgagctg gtgaccgaca      3000
     agtggtcaga ttcctgtttg ccttgaatgc taagtggcta catagaggtt tcttaaattt      3060
     taaccttttt tctaagactc caaaatccat ttttttttat aaaaaacaat ccgttttaaa      3120
     tattaaaata tgtttctatt gttccacaaa atcaatcgaa tgcctagcat tttattctac      3180
     taaaattttc caagtaaaaa tgctataaga tatttactat agttactata gcactgctga      3240
     gagcagtagc tgtagtaata tagaatgctc tgctcaaaaa aaaa                       3284
//
ID   hAT-3N1_RPr repbase;    DNA;    INV; 2002 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-3N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2002
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3337-3337 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Satellite sequences are masked
CC   out.
XX
SQ   Sequence 2002 BP; 725 A; 272 C; 308 G; 653 T; 44 other;
     cagtgcttct taaactatgg gtcgcgaccc ctcgcgagag aatttttggg ggtcgcggaa        60
     atatattgtg aactgataaa ttaattcact tattaacatt ttagtaacaa gtaaatagaa       120
     aaaacaagtt tttttggttt acttcagtaa ctcgcgaacg ttcagcaagt agtggggata       180
     tatgttgtag tgatcctatc aaagatacca tgcaaatgaa gtataagttt gttgttctgt       240
     ggcagtacac ttttcaatgg agtttaggtt tcgcccaatt gcacagtgtc cattaatctt       300
     tcaaatacat ggtaaatgtt aatggctata aagttctacg tttcatacaa attaaaaaca       360
     tccttactta tttacgattt attttagttg aatttgtact ctaaaatgga taagtggcta       420
     aatcaagcta agaaatgtga atccgaaaaa gaagaaacca aagcgacttc gagtacatcg       480
     gaaaataagt cgaaaataca agaaaagagc cagattcgtc caaaaaaaga acatacaatg       540
     aatcatttct gcaatacggg tttactttta ataattatca cgataaacag caaccgcttt       600
     gtttaatctg caacgaaact ttggctaatg aaagcatgaa gcccacaaaa ttaaaaaggc       660
     attttgaaac gaagcatcca tcgtgtgcaa ccatgacaga aaaaatgttg gattgtagag       720
     agaattgaag cagaaggtaa taaccatatt axxxxxxxxx xxxxxxxxxx xxxxxxxxxx       780
     xxxxxxxxxx xxxxaacgat gagttgattt gaaaaatgaa gtaatgttgt ttttatcaga       840
     tagtaattct gaatatgaaa atttttttca caatgacatt tggttttgta aattatgcta       900
     tttatcagat atttttgaga agataaatga actaaactts tctcttcagg gagaaaatac       960
     taacattctc catctgataa ataaagtaaa agcattcata aaaaaaatta atcatttgga      1020
     aaactaaaat agagagcaac tcctatgaaa tgtttaacag catgagtgac tttattattg      1080
     ataataattt aagtttaagc tgtcttcagg aagtacaaca gattatactt ggtcatttgg      1140
     acaacttaga aaatcaattt caaaaatatt tacattcaga tattgaatct aatcagtttg      1200
     attgggtatt gaaaccattc ctgatagaaa tggatcaagt gcaacattta tcactaaagg      1260
     cacagcaaga atttgcagaa ctttctgctg atgctgaagt cttaaacttg aatttcccaa      1320
     gaaaagttta gcaacttttt ggattggagt taaaaaagaa tatccaacaa tctctgacga      1380
     agcattgaaa gttcttttgc catttgccac cacatactta tgtgaatcat cattttcaac      1440
     tttaacgtca ataaaaacaa agtaccgttc caatataaaa aatattgaaa atgctatgag      1500
     accttcaata acaaatattt atcccagatt taatttattg tgtgaaggta aacaagcaca      1560
     tccttctcat taaaaataat taaacgattt taatacgaaa cattttttat ggttttctag      1620
     ttttacaata aaagtttatt tgtgataatt taaaataaaa tttatattta tgttttttat      1680
     ttttaaaaag tgttgatatt gatttgatgt tttaattgct tttataatta tcaatatttt      1740
     tctaaatata taagcctaaa attaatatac ggttttttta tttttacaaa cttcaatttt      1800
     ttcctgttta aaaaaatcga ggataaattt agcggtgtta cagcctgatg ttttcatata      1860
     taagcttata tatacaatca tatccaaata tgaccttaaa tcgacttata gcctaatcat      1920
     taggtgttag gatataaaga ggtcggcaag aaatttttac tttaaaaagg ggtcgcggtc      1980
     gcaaaaagtt taagaagcac tg                                               2002
//
ID   hAT-3N1_TCas repbase;    DNA;    INV; 774 BP.
XX
AC   .
XX
DT   22-AUG-2019 (Rel. 24.09, Created)
DT   22-AUG-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from Tribolium castaneum - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-3N1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-774
RA   Kojima K.K.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1706-1706 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 17-bp TIRs.
XX
SQ   Sequence 774 BP; 271 A; 122 C; 128 G; 253 T; 0 other;
     attcggaaat aaaattaact agacgccctc tggtgatgac ttttgaacta tgtcgaaaac        60
     agtaaagaaa ttttcgtaat gccacattta actgacattt aatgaattgt tcaacaattt       120
     tgcgtgtata gtgttaatta cttacaatag aaagaattac tttaaaagta cgtggtggta       180
     aatactagcg ttgactttgg ttctgtagtt tttcgtggta taaagtgttt attgttggaa       240
     cttgaaagtg gataaaaagt gaaaaatatt taaattttga ttacaaagtg ttatcaaaca       300
     gttgtctaat taaagattat aagtaatgga tcacagcgaa cacaaagttt ggctcaagaa       360
     accaataaat tagtgaagtg ttatgaattt taggttagaa ttttccactg aaaaaatcat       420
     gaaatgctgc ggtaaatcta caaaactaca ataaagatta acaactgctg atacatttaa       480
     acgtaaatta tgccaaaagg taggcttttc aatgtctttg taataatttt ccaataaaga       540
     aagtgaacca aacagtcatt cgttattcgt gttttcctcg tcatctctca tttgtcaaca       600
     taagtttctt gcatcaaaga tgcaataatc attccgcata ggcaatgtaa taattgtgaa       660
     gccccaaaat tcgtacaacg ctcaaaatat ccgaataaac attttcccgc catttatggt       720
     tactgttttc gacctagctc agtggcgccc ccaacggtaa ttttacttcc gaat             774
//
ID   hAT-3_AP    repbase;    DNA;    INV; 4178 BP.
XX
AC   .
XX
DT   31-JUL-2009 (Rel. 14.07, Created)
DT   31-JUL-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_AP.
XX
NM   hAT-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4178
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1365-1365 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1785..2417
FT                 /product="hAT-3_AP_1p"
FT                 /translation="VCVRYAVLQEVNIVSKSXQGPNTNLDTYATLLDALIK
FT                 FMDEYRETGFNQAKXEAKELVQSLEIETEFKVPRYRKKKLFEYYEGNTNYT
FT                 TDPENDFRRSYFLELMDNAIQSIKKRFDQTSYYYNNNFGFLYKIGKLRTST
FT                 QEDIRKNCXDLAMFLKVGDEKDICXCDLFDELMICRSXVDFSGVTKGELKG
FT                 LQTPPPPPEMLRKLKNDFNGL"
XX
SQ   Sequence 4178 BP; 1460 A; 620 C; 704 G; 1335 T; 59 other;
     ccagacggag cagcttttgc cgcgcatgag tatgaataca taaatacatt ttccgcagct        60
     ttttttataa tataaaatct cgatccgtgg gatcgccccc aagggttact ttttatgtaa       120
     tatcaggtgg ggctatagcc cccgcccaaa aaaaaaaaaa ttagccccag ttgcgccact       180
     gtacaattcc ctacattaca aacaactgaa tcaggtaaag aaaaagaata cttagggatt       240
     tctgaagtac aaatattttc ttcttctgat cttaaataca tagatgaacc gttacccgaa       300
     aacttaatga taacagctct aacacaatat caattacaat gaagaatatt caagtacaat       360
     cccctacatt acaaataact gaatcagata aagaaaaaga atacttaggg atttctgaag       420
     tacaaacatt ctcttcttct gatacaaaga aactaatatg ttggatacaa atagtttgtg       480
     tcaaganaaa aaacttagtg tgatagaccc cagcaacttg gactgataat atgacgcaac       540
     atataagana cgaaatcgtt aaattcggtc cataccaagt gaagaatttt gattttccat       600
     actcggttga ttgacggcgc aaaaagaaaa ttctcnaann attattacta caagaaaatt       660
     gncaaatggt gaaattgtag anagacattg gctngtntat tcaaaatcga gtgatcgggt       720
     attttgtttt tgttgtaaac ttttttcttc ttccgganca cagcaatctt agccattgtc       780
     aactataggt accaacgatt ggaaacgttt atctgaaaat ttaaaatctc acgaacgttc       840
     tagcctacat attgacaatc tgtacagata tggacggaac taaaantgag aatttcggaa       900
     aattccacta tngataaagc acatcaancg gttatggaaa aagaaaaacg acattggaaa       960
     aacgtgatga tccgcatcat agccgctata cagtatttta cacttacgnc gaataaaaaa      1020
     taaagaaact cgtgtncatt atcttggnca cganatncaa aacgaactaa ttnanttaat      1080
     ggcaacaaaa gtaaaaacaa atatattacg aaaaataaaa tcggcnaaat attattccgt      1140
     nattatggac tgcacnccag atatcagcca acgtgaacag ttatcnntga ttattagaat      1200
     tgttgacatg aattttgaaa atgaagncac taatccggaa attaaagaat actttatnga      1260
     ttttgttaat ataanttcta gtactggntt gattatcaga agtgctttta nanaaattag      1320
     gtgagtatca aatacccgtg ggaaactgtc gaggtcaagg ctatgacaat ggcgcnaata      1380
     tggcgggtca atataaaggn gtncaggcta gattactaaa tcaaaatcca agggcatttt      1440
     tatgccatgc gctgcncata gnttaaattt agtatttggn gacgctgcca aaagttcaac      1500
     cagagctata catttttttg gnacngttca aagaatntac gctttatttt ctgcatctac      1560
     aggaagntgg ganattttna aaaaacattg tcaccgttgg actgtnaaaa agtggtcaga      1620
     aacncgatgg gagagccggc atgacagcgt aaaggcagtn cgatttcaan ttaaagaaat      1680
     natggaagct ttggacgaag tttcagaaac cacaaatgat tctttaatta aaagcgaaac      1740
     gcattcgtta gcnnntgaaa tnagtggnta tgaatttctt ataagtttgt gttcggtacg      1800
     ctgtactgca ggaagtaaat attgtnagta aaagtntaca aggtccaaat accaatttag      1860
     atacatatgc aacattactc gatgctctta ttaagtttat ggacgagtac agagaaacgg      1920
     gatttaatca agctaaantt gaagcaaaag agcttgttca gtctttggag attgaaacag      1980
     aatttaaagt tccgcgatat cgaaaaaaaa aattgtttga atactatgaa ggtaatacaa      2040
     attatacaac agatccggag aatgatttta gacgttcata cttcttagaa ttaatggata      2100
     atgcaattca gtctataaaa aaaagatttg accaaacatc atattattac aataacaatt      2160
     ttggattttt atataaaatt ggaaaacttc gaacgtctac gcaagaggat attagaaaga      2220
     attgtangga tcttgcaatg tttttaaaag taggcgatga aaaagatatt tgtgantgtg      2280
     atttatttga cgaactcatg atttgccgaa gtnttgtgga tttcagtggc gtgaccaagg      2340
     gggagctgaa ggggctgcag accccccccc ccccccccga aatgttaaga aaattaaaaa      2400
     atgattttaa tggtctatga tagtcactca aaaagtctta tattgtattt aaaatattta      2460
     aaaatgtatt acttatacag tggcgttccc aggaatttta aatgggggaa caccattttt      2520
     tcttgaagta taaaattata tcgtaactgt gagtctacgc acattgaaaa catacaagct      2580
     gtgagattga atttaggtct gagcggagat tatgtgtttt atttttaatt tttttgtcag      2640
     caattacttt ttgaagcagt aaaaatgctt caatctcaat atcactattt tttgtagaca      2700
     tttgacattt tcaaattttt ttttttagtg tcgattaaaa attatggact tgtaaaaaca      2760
     tggataattt aatgcaagat accacataag ttgtgtctaa ctttttttct tattgaataa      2820
     tgttactttc gaatcgtaaa tcgtaatccg ttgacagtat aaactaattt atgcactagg      2880
     aaattaattt tataggaata aatattataa ttttggaaac ataataatat aaaaggtata      2940
     ttgttggagt attggacttg gacatacata aaatactgta attatatact gaacaagatt      3000
     attttcgaaa tcatatttgt taagatttta ttttcataga aaatattttg ttgggaatat      3060
     attagatata ttaattacct attgggttac gatataattc tttattttat tataatttct      3120
     aaggtccaat agccaatgct ttatacctaa tatattatat tgctatagga atataaatta      3180
     ttatgtggtg tgtgcgaaag agaaaataga taatattacc taaatagaca ataccccctg      3240
     ccaccactgg cctaaaatta aaagtaaaaa tatcacacaa tatacaaatc tagataaatg      3300
     aatggtgcct tttcttagat atacaaatca atattttttt ttatcaatat taataatcaa      3360
     aatcaaaata tattatatta tatacaattt actagtacaa atattacaaa tataacatta      3420
     aataataaaa attaaaacaa tcagatattt taacctaact aatattattt ttagtttagt      3480
     aagattgttc acggactaaa acaccggtac caccaataaa ctcgcgaaag aaacatcgca      3540
     ataccgttat gctttgctaa atactgtata gcggctatga tgcggatcat cacgtttttc      3600
     caatgttgtt tttctttttc catagccgat tgatgtgctt tatctatagt ggaattttcc      3660
     agtccaagtt gctggggtct atcacactaa gttttttatc ttgacacaaa ctatttgtat      3720
     ccaacatatt attttctttt tagcagaaga agagaatgtt tgtacttcag aaatccctaa      3780
     gtattctttt tctttatctg attcagttat ttgtaatgta ggggattgta cttgaatatt      3840
     cgtcattgta attaatattg tgttagggct gttatcatta aggttttcgg gtaacggttc      3900
     atctatgtat ttaagatcag aagaagaaaa tatttttact tcagaaatcc ctaagttttc      3960
     tttttcttta cctgattcag ttatttgtaa tgtagggaat tgtacagtgg cgcaactagg      4020
     gctaaaattt ttgggggggg ctgtagcccc acctgatatt acataaaaag taacccgtgg      4080
     gggcgatcct acggatcgag attttatatt ataaaaaaag ctgcggaaaa tgtatttatg      4140
     tattcatact catgcgcggc aaaagttgct ccgtctgg                              4178
//
ID   hAT-3_DBp   repbase;    DNA;    INV; 2358 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2358
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 608-608 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. 69-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           718..2001
FT                 /product="hAT-3_DBp_1p"
FT                 /translation="MVASDVLPLNVVNNVRLTRLIHELDPRYKMPSKTHLR
FT                 NVLLKNEYNNLKDTLKADLEHIESVALTTDGWTSRANESYLTITCHYVTTS
FT                 FELASKILSTNQLASPTNHSAINIADTISNVVAEWGLLGKVFCIVTDNDAT
FT                 MKKACAHLKIMHISCYAHTINLLVQDLLKLPCVSGILLKCKRTVSFFKSSN
FT                 IAYAKFKEEQGVSKPYSLVQEVPTRWNSALFMIQRILETNESISKVLLKTP
FT                 KSLPPFTADEITLLKELVEILNAFQDATVSISGDTKVTISLIIPTCCELRQ
FT                 KVSEMGSFISPEAKQVVDYLKVRMPERFSPYETRTATRLATILDPRFKKDG
FT                 FLQPSNAEQAAKTLELEVSTYLSKTVQRPQPAPPQQKRFSFMSKKLEDKVK
FT                 SNKADAIIILRQYFEVSHEAEEANPLEYWKVIKN"
XX
SQ   Sequence 2358 BP; 793 A; 445 C; 466 G; 654 T; 0 other;
     tagagctgga aaacaatcga tggaactatc gataccatcg atgtttttga aattttctca        60
     acatcgatgg ttcgttggcc actatcgatt gttttcatta attctgtgca ttgaggacaa       120
     cgtgtaagta aaatgggttt tgtggtgcat tattttaatt atattaaata tttaatcaca       180
     tgtagtgaaa atttgaatac ctcgcaagca agtggtggtg ttcgttgtag gcgtggtgct       240
     acaaaatgga caagtttgtg aaaagtaagt attgtttcaa aattactctt tgcatacaag       300
     tgaaaatgta ttcatgcgta tgtattggta tgcaaacgca ttgaaaaggc cggtatttat       360
     gcatatactc attgcatgct gtttttattt ttattatttt agtaacatca actagcaata       420
     aagaaaatga cgacgatgga cagcatgcaa caaagcgcaa aagagaaaca tcgatggttt       480
     ggcaggtatt taaaaaatgc aaagatagca atacggcgat ttgcaaccag tgcggtaagc       540
     agtacaaaac tggtggaaat accactaacc ccatggatca cctgaagcgt attcatcctg       600
     cgctactaaa agagcaacct ctagaaaagg aaaaaagttt gacaaagttc ctagagcgtg       660
     acacccttta ctcaaatacg tcagaaaaaa aaacgcattg acaagcttgt attaaatatg       720
     gtcgcgtccg atgtcttgcc attaaatgtg gttaataatg taaggttaac aaggttgatt       780
     catgagcttg atccacgtta caaaatgcct agtaagactc acttgcgaaa cgtactgtta       840
     aaaaatgaat acaacaattt aaaagatact ttaaaagcag atctagagca tatagaaagc       900
     gtcgcattga caacagatgg ctggacatca agagcaaatg aatcatattt aacaattacc       960
     tgtcattatg taaccacatc ttttgagctt gcatcaaaaa ttttgtcaac aaatcaacta      1020
     gcttccccta caaaccattc agctattaac attgctgata ctatcagtaa tgttgtagct      1080
     gaatggggct tactagggaa agtcttttgc atagttaccg acaatgacgc cacaatgaaa      1140
     aaagcatgtg cgcatctcaa aatcatgcat atttcttgtt atgcgcatac cataaattta      1200
     ttggtacaag atttgctaaa gcttccatgc gtatctggga ttcttttaaa gtgcaagcgc      1260
     acagtctcat tttttaaatc gagcaatata gcatatgcga agtttaagga ggagcaaggg      1320
     gttagtaagc cgtacagttt ggtccaggag gtacctaccc gctggaatag tgcgcttttc      1380
     atgattcagc gtatcctgga gacaaacgaa tccatctcaa aggttctttt aaaaactcca      1440
     aagtcactac cgccgtttac cgcagacgaa atcactctcc taaaagaatt ggttgagata      1500
     ctgaatgcat ttcaggatgc aacggtatcc atttctggag ataccaaagt gactatatca      1560
     cttattatcc caacatgctg cgagttgcgc caaaaagtgt cggaaatggg atcgttcata      1620
     tctccagagg cgaaacaagt agtggattat ctcaaggtcc gaatgccaga acggttttca      1680
     ccgtatgaga cgcgaacagc aacaaggctt gcaaccatat tggacccacg gttcaaaaag      1740
     gatggattcc tgcagccatc aaatgctgag caggcagcaa aaaccttgga gctggaagtg      1800
     tctacatact tatcaaaaac tgtccaacgt ccacagccag caccaccaca acaaaaacgc      1860
     ttctcgttta tgagcaagaa actggaagac aaggtgaaat ctaacaaagc tgacgctatt      1920
     ataattctcc gccaatattt tgaagtgtcg catgaagcag aagaagcaaa tccacttgaa      1980
     tattggaagg taataaaaaa ttaaatatat gtagcatggg tgtaaaaaat attttctctt      2040
     tattttagga gcatacaaag gataccacgg ccttagcaat gctggctaaa aaggtgttat      2100
     gcgtgccatc atcttcttgc gcttcagaac gagcattcag caaagctgga cagatcgtgt      2160
     ccgacaggag atgcgctctg aaaccaaaca tagtcgataa actgttgttc ctaaacaaga      2220
     atagtgatct caaaaaataa aaacttgtta attgttattt ttgtgtttta actgaaaaca      2280
     tcgatgtttc atcgatgttt actttcaaaa acatcgaaaa catcgatggt cccagacatc      2340
     gattgttttc cagctcta                                                    2358
//
ID   hAT-3_DF    repbase;    DNA;    INV; 779 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-779
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 805-805 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 17-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 779 BP; 254 A; 138 C; 165 G; 222 T; 0 other;
     tagagttgcc gcgaatagtg attttgccga ataccgaata ccgaatgttc ggccatgctg        60
     taagccgaag cgccgcggcc gccgaatatt cggcacaaag tacatgctac attgttgcca       120
     gtttagctta ttataagctt gtaatgatga tgagaatagt agtacagatg acgattcttc       180
     tccacctcgt aagaaaaggg atttgaacga aaatgataag cggtttgaaa tacatgacat       240
     tttttggaac tgctttgagg aagttgctaa agacaatatg cgaaatagta acactaatca       300
     tgaggagaaa gtggaaagga atgctgtggc aaatgaaata gatttttatt tgaaatcaat       360
     tcgcctagat cggaaagctg atccttataa gtggtggtca gcaaatgaaa aacaataccc       420
     aatcctcgcg aaatttgcca aaatttatct ttcctctccc gggagtagcg tctatagtga       480
     gaggttgttt tccgaagcag gtattattta cgatgaaaag cgaaatcggt tactaccgac       540
     aaatgcagaa aaactggtgt tcgttcatca caacttaccg ctaattaatt ttacttattg       600
     acatatttta atttaataat aaaaaaagtt ttgataaaag tgatgtgttt ttttcatgat       660
     ttggcactat tcggcattcg gccgaatagt acctattatt cggccgaatg ccgaatacca       720
     aaaaaagtgg ccgaataggc cgaataccga atacttgccg aatattcgcg gcaactcta        779
//
ID   hAT-3_DK    repbase;    DNA;    INV; 2559 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2559
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1225-1225 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(210..1493,1529..2035)
FT                 /product="hAT-3_DK_1p"
FT                 /note="transposase."
FT                 /translation="MAITNXRITSKTSFCWKYFAKLNTSSVKCTICAKILK
FT                 TCGNTTNMKDHLRAVHKINKXDVEIDQTEPKRIASQLSIMQSFENAAEFGS
FT                 DGQKTKINDAVVYMIAKGMQPFSIVDNEGFINLMKTVXPRYRIPSRGTITK
FT                 WVXHKHVQLKEXSKTLLQDKTVTITMDVWSDQMTMRSYLGITVHFHDQHDM
FT                 ASLTIGVLELSERHTGAYLGNMLETCCXDWNIEKHLVTAVVTDNGANVVKA
FT                 VELSFGRNKHIPCFAHTLNLIARAAMQKNGISSIIVKVKEIVTFXKRSXVA
FT                 SDNLRRHTDKTLIQDVPTRWNSTFYMIQRFLELKTVVNDILLSVCNELSML
FT                 NGNELQLLNDIIPMLRPLEEATNIISGDSYCTASMVIPMVNILKEKLANVT
FT                 PNMPDAKDIKDFLLQEIDRRMGAIEEVLLKSSICVSILAMATFLDPRFKKL
FT                 HFKDAQACETSIQKIKSIVKPMATENVKENLKNSTNNNSSSFWDHHHHLAE
FT                 SHSPNGDVDIEVMSYLQMPLAPFHSNPLQIWDGMKNSYPNLHRVALQFLPV
FT                 VGSSVPSEKVFSAASNVLNRKRNRICPDRLSRILFLKSVNKKYYFCNSXD"
XX
SQ   Sequence 2559 BP; 863 A; 420 C; 489 G; 759 T; 28 other;
     ttttagcgat gttttccgat gtttttcgat gkttttgttg atatcgatgt tgaccgatgc        60
     atcgatgttt cacgaaacat cggtctctaa tttcacgaaa cgtcggtctc taattgttat       120
     tgagtcggmg ttggttgtaa agtgaaaaaa ttacaaaata tataagaaat gccaaagtaa       180
     gtatacttat tagttttaaa tgaatatata tggcaatwac aaattasaga ataacgtcaa       240
     agaccagctt ttgttggaaa tatttcgcca aactgaacac aagcagtgtt aaatgtacga       300
     tatgcgcgaa aatattaaaa acgtgtggaa acactacgaa catgaaggat catctacgcg       360
     cagtacataa aataaataag gawgatgtgg aaatcgacca gactgagcca aaaaggattg       420
     catcccaatt gtcaataatg caaagtttcg aaaatgcagc agaattcggc agcgatggcc       480
     aaaaaacaaa aattaacgat gccgttgtgt atatgatcgc aaaaggcatg cagccgtttt       540
     ccattgttga caacgaggga ttcattaact taatgaaaac tgttkcacca cgttacagaa       600
     taccctcgcg gggtactatw acgaaatggg tggascataa acacgtgcag ttaaaggaaw       660
     tcagcaagac actgctgcaa gacaaaactg tcaccatcac aatggatgtg tggagcgacc       720
     agatgacgat gcgaagttat ctgggcataa ctgtgcattt tcatgatcaa catgacatgg       780
     cgtcattgac tatcggtgtc ttagagctct ccgagaggca cactggagct tacctcggta       840
     atatgttgga aacatgctgc wccgattgga atattgaaaa acacttagtg ackgccgttg       900
     tcaccgacaa cggmgcaaat gttgttaaag ctgtggagct aagttttggg cgaaataagc       960
     acataccgtg ttttgcccat actctgaatt taattgcgcg agctgccatg cagaaaaatg      1020
     gaataagctc aattattgtc aaggtgaagg aaattgtcac ttttktcaag agaagctkcg      1080
     tggcaagcga caatttgcga agacatacgg ataaaacatt aatacaagac gttcctacga      1140
     gatggaacag cacgttttac atgatccagc gttttttgga gctcaaaact gttgtgaatg      1200
     atattctttt aagtgtgtgc aacgaattgt ctatgttgaa cggaaatgag ttgcaattgc      1260
     taaatgatat cattccaatg cttcgtccgc tcgaggaagc aacaaatata ataagcggag      1320
     attcctattg cacagctagc atggtaattc caatggtaaa cattttgaaa gaaaaattgg      1380
     ctaatgttac accgaacatg ccagatgcaa aagacataaa ggacttcttg ctacaggaaa      1440
     tcgataggcg tatgggcgca atcgaggagg tattattaaa atctagcata tgttagctta      1500
     aatatttatt tttaatgtat tgttttaggt ctcaattctg gcaatggcaa ctttccttga      1560
     tccccgtttt aagaaattgc atttcaaaga cgcgcaggca tgcgaaactt caatccaaaa      1620
     aataaaatca atcgtcaaac cgatggcaac cgagaacgtc aaggaaaacc tgaaaaattc      1680
     aacaaataac aattcgagtt ctttttggga ccatcaccac catttggcag agtcgcacag      1740
     tcccaatggc gatgtagata ttgaagtaat gtcgtatctg caaatgccat tagcaccttt      1800
     tcacagcaac cctttacaaa tatgggatgg tatgaaaaat tcttatccta atttacatag      1860
     agtagcttta caatttttac cggtagtggg atcatctgtt ccctctgaaa aagtgttttc      1920
     agctgcttct aatgttttga atcgaaaaag aaataggata tgcccagatc ggctaagtcg      1980
     cattttattt ttgaaaagcg taaacaaaaa atattatttc tgtaattcga amgactaaga      2040
     ttactatgaa actctaagaa tgaaaagact gctagaaagc attattattt ttaagttttt      2100
     gtgcctatgm aaaatgtcta aaagaaatga aagackgcta tgaaattttg ttatatttgt      2160
     tttwawgttt attgcctatt ttataattta aaagaaaatg aaagactgct atgaaagcag      2220
     tattattttt aattttcata ttctkcaata aattaagagt gctgtgaaag cataawtatt      2280
     gaatttattt gttttttata atataaaaat aaamamaaaa tatataaata ctwcggaaas      2340
     ttgtttgaag cttttattca taaataatat agtagaatta agccttttgt aatttagtag      2400
     aaaattcatc gatgcatcga acatckatkt ttttttagca atattttccg atgttttccg      2460
     attttttttt ataccgatgt taaggtatgc atcgatggtc tattttaaaa acatcgacga      2520
     acatcgacat cgaagttttc cgtcgaactw gcatcacta                             2559
//
ID   hAT-3_DRh   repbase;    DNA;    INV; 1490 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1490
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1428-1428 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Likely 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1490 BP; 497 A; 252 C; 257 G; 484 T; 0 other;
     tagggatgtc aaatattttt aaaatatcgt atcgctgata tattttcctt aagaaaaata        60
     ttgatatgat atttaatata tcgccaaaaa atatcgatat atcagatatt tttgattttt       120
     ttttcagttg aatttcaaaa ttttagccgc gtaaataagc taacaacaag gaaacgagac       180
     ttttgcccta aaattaaagt aaaagcacta aaaaaatata aaaaataaaa tacgctttgc       240
     tacatttgtt attttattag tttcataagt ctttgcttat ggattttaaa aatactcttt       300
     ccgttatgtg gcggtcggtc atgcggctgc gtgtgtcgaa gacaacgcac ttaatagccg       360
     acgctaaccg ctctgacgac actgagctac ccgagtacca gaattccacc ggattagaga       420
     gctgcacggc tgcactcaaa tttttgtatc tcagtactct tgttgagttg tgtactctaa       480
     tttgagcaca acgcattcag ctgatcgagt tcgcatcgca ctgtattctc atttgagcgc       540
     aattttgagt attcatatga aatggcattg aatgaatgtg tgtgcaaaac ggaatgaatg       600
     aatgaatgaa gcatagaatt gactgaatac tcagtataca atttgtgcgc cgctttgtca       660
     tgatgatgca tttattgatt tcatcgaagt ccaaaaagct acaaccttaa taaatcaaat       720
     agacaaggaa ataaacggtt attgtaacac aagtgtaatt ttttcagata gttttgattg       780
     ccttagttgg tggaccgacc ataaaaaaat gttccccctt ttatttaaga ctagttgtaa       840
     gattttttgt ataccagcaa ctagcgcggc ttctgagaga gcgttttctg atgccagaaa       900
     cttaattact gaaaaacgct gcagtgtatc aaaaaatcca gaaagcataa ataaaattat       960
     gtttctacat tctaatataa ataatattta ataaggaaaa attaataatt agtttttaag      1020
     cgaaatatac atacatgaaa tgaaaataaa cattgtatta ttgtctctta tttaatttcg      1080
     caatagtaaa tacagctcac gtaaaaggaa acaatgcgtc attcatcgca ctcactattt      1140
     ttacccggtt ctttcggcat tcaattcgct ctctctatgt gtgagttcga tgagttgagt      1200
     acagcggcgg cgcacacatt cattcacatt cattgcaatt cgcagccgaa ttcattcaac      1260
     tcattggcag atgaatgtct cataagccgt tttgaatgcg gccgtgcagc cctttacacc      1320
     ggatcgctgt cccagtcggt gtaaggcatg cttatgtaca tgagagaaag atatgcaagt      1380
     atcaaacaat atcgaaaaat aaactatcga tattttgata tttggctaaa aaaatatcac      1440
     gatataaata tatttttttt tgcaagaaat atcgatatat tgatattttg                 1490
//
ID   hAT-3_DT    repbase;    DNA;    INV; 2735 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA trotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2735
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1443-1443 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus (possibly active). 24-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(810..1310,1265..2446)
FT                 /product="hAT-3_DT_1p"
FT                 /translation="MTSSRNRIHPDVDVDTENKKKCTKLVTEWTVQNGRPF
FT                 SIIADSGLKNLAQFFISVGANVGQNVNIDSLLPHPTSVSRNIGALYEFHFN
FT                 EIKKEIVHCKAFGYSITSDIWTDDFFKESYISLTMHYIKEGTLKNRLLAIK
FT                 SMKGVSCTGKNYKICIIALVLILTKTVSNLYNCFGFNINKNCILGDKIRNK
FT                 IESILVDFGCDLSVDAPIIVTDRGSNMKAAFSGLNTLNCVNHLVHNVVEKV
FT                 VNQVPEMKEMVDRCSKIVKYFKKSGQNSSLKSTLKSYCPTRWNTIYNLFQS
FT                 VEINWMEITNILMEKNQISRMQNINLANLSALVSLLAPYENCSKILEGNSY
FT                 PTLHLTFPHINNLKKMSIVKENDVEIVKKCKLSLQNLLKTVVEDNLKNFHM
FT                 VALFLFPPTNKLSQFLDCQKQKTIEECEKIMMNIHLNSPVPEKECLESKPP
FT                 IDSIFFDYYQPTQDTSILSRVSNEIVSYQNINIAYAEEFNVLQWWENNKEQ
FT                 FPLLYKTSLKILAAPASSAASERAFSIAKNLISEKRSKIATSEDMVNKIMF
FT                 LHSNIDAFNESLLK"
XX
SQ   Sequence 2735 BP; 961 A; 466 C; 485 G; 823 T; 0 other;
     tagaggtctg catgaatgca ttcatttctc agtcaacagt actgtacagc agtgtactgc        60
     actcaagtat actgaactca tttctatctg aacagtattt tccataactc aaaaaatagt       120
     gtacaacatt ttggtgttct catttagagt gagtgacagt aaaagttgta ctctctataa       180
     gtgagttcta tgcaatgtat cgttttacaa cattgtacac aaaacaaaat tatgggtgca       240
     tattgtgtgt tctgtcaaac aactgagttg cacctaagtt ccttgaaaat ttagtagttt       300
     gcaaagcttt gacatggcag cttctaagga aaacgactca agcgcaataa attcgcaaga       360
     attggtaagt gatgattaaa ataaatatta cattgccaat tgaggttaat gtattgttaa       420
     atccgttaaa taactaaata tctgcgtttg tttagatgat tgtgtttgtc cttatattag       480
     tatagagtcg cctaaactgt gtttgtatgt atgtatataa aaatatgtgg tattaaagta       540
     taactgtgtt aaatcagaat gcatcgttgg agaacttaaa tgaagcgacc agttttaagc       600
     aacatgcggc caatatcaaa tgcaaactat tgaatggaca attcaaactt tcggccaaac       660
     gaggacgaag caaggtttgg gagacttttt cccggatagt cgacgaaagc ggtgccgagc       720
     taaatgattt cgttgcgtgc aacatttgca aaagcgtgta caagttcgaa aaaagcacgt       780
     caaatttagt taaacacagg tgctacatca tgacgagctc ccgcaaccgc atccatcccg       840
     atgttgatgt ggacaccgaa aacaaaaaaa agtgcaccaa gctagtcact gaatggaccg       900
     tccaaaatgg ccgacctttc agtattatag cagactccgg attaaagaac ttagcacaat       960
     tttttatttc tgttggtgca aatgtcggtc aaaatgttaa tatagactca ttattgccac      1020
     atccaactag tgtctcacga aacatcggag cactttatga atttcatttt aatgaaatta      1080
     aaaaagaaat agtacattgt aaggcatttg gatatagcat aacctctgat atttggacag      1140
     acgatttttt taaagaatcg tacatatccc tgacgatgca ttacataaag gaaggaaccc      1200
     ttaaaaaccg cttgctggca ataaaatcga tgaagggagt ttcttgtacc ggtaagaatt      1260
     ataaaatttg tataattgct ttggttttaa tattaacaaa aactgtatct taggtgataa      1320
     aataagaaac aaaatagaaa gtattctggt cgattttgga tgcgatttat cggtggatgc      1380
     cccaataatt gttacagaca gaggatctaa catgaaagct gcattcagtg gattaaatac      1440
     attaaattgt gttaaccact tagtacacaa tgttgttgaa aaagtggtca accaggtccc      1500
     tgaaatgaag gaaatggtag atcgctgcag caaaattgtt aaatatttca agaaatcagg      1560
     acaaaacagc agcctaaaaa gtactctgaa aagctactgt cctactcgat ggaatacgat      1620
     atataatctt ttccaatcag ttgagattaa ttggatggaa ataacaaata tattaatgga      1680
     gaaaaatcaa ataagtagga tgcagaacat taacttagcc aacttaagtg cattggttag      1740
     ccttttagct ccatatgaaa actgttcaaa aatactagag ggcaacagtt atcctacttt      1800
     gcatcttact tttccccaca ttaacaattt gaaaaagatg tccatagtca aagaaaatga      1860
     tgtggaaata gtcaaaaaat gtaaactttc gcttcaaaac cttttgaaga ctgttgttga      1920
     agataattta aagaatttcc acatggtcgc tctctttttg tttccaccga caaataaatt      1980
     atctcaattt ttagattgtc aaaaacaaaa aaccattgaa gaatgtgaga aaatcatgat      2040
     gaatattcat ttaaatagcc cagttcccga aaaagaatgc ctggaatcca aaccaccaat      2100
     agattcaatt ttcttcgatt actatcaacc cactcaagat accagcatat tgtcccgtgt      2160
     atcaaatgaa attgtatcgt atcaaaatat taacatagcc tacgctgaag aatttaatgt      2220
     cttgcaatgg tgggaaaaca ataaggaaca atttccgctg ttatataaga ccagcttaaa      2280
     gattttagcg gctcctgcga gtagtgctgc atctgaacgt gctttttcaa tagccaaaaa      2340
     tttaatatcc gaaaaacgca gcaaaatagc caccagcgag gatatggtta acaaaataat      2400
     gttcttgcat tccaatattg acgcttttaa tgaatccttg ttaaaataaa atgtttagaa      2460
     ttaataatca catataacaa ataaatatat ttttcaccct agctaacaaa tgttgttctc      2520
     aattaaaact tactgaacag tgtgtgaact gctcaccaat acagtgtact cattgtgtgc      2580
     tgtacaatgt gtgtttgagt gagcacagta gctgtcatta ctggcattag aacaatattc      2640
     actcacattc attgaaagtt gtacaggaaa acttgcactc atttttagaa tgaatgattc      2700
     atttgaccct ttggatgcat tcatgcaggc ctcta                                 2735
//
ID   hAT-3_FoCa  repbase;    DNA;    INV; 4692 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4692
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2481-2481 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs. 12-bp TIRs.
XX
SQ   Sequence 4692 BP; 1573 A; 811 C; 896 G; 1411 T; 1 other;
     catacctgtt cacattcgtt cactaaagtg agtttgaata ttgaatacgt acgaattatt        60
     caaaattttt gaattttgaa tgaataaata tgccccattc atttattgaa tgaatattga       120
     atgaataaat atgtcccgga catttattta atgaataatg aatgaatgaa taaaattttg       180
     aatgaatgaa ttgaataagg gatgggtgaa tgtaataaat gaattgtgaa taaatttggc       240
     cctcattcac ctcacgttga agtgaatgag tctgtggtct gtgatgtgta atcattcttt       300
     atgattgtgg ttgaaattct cattccttat gtgcatcatc attgcgtgcc gggaacttcg       360
     gtcggagcat ggtgggagcc agttcaatat tccaacccat tttagattat tacccgtgtg       420
     cccagattaa aaaataaata aaaatcgttc gaatacttta tacsgaggga tttaacttta       480
     taagttaaca attgcaacct agagtagtta tgacatcaca agtcaaccct ggcgatggcg       540
     aagctgtcca caaggatcaa gaaatcgtcg atcttgagca tgactctgag ggaggttcca       600
     aaaagcctaa actcgtaaaa caaccaggtt ttgaaaattt gccgaagttc cgtttcttct       660
     ttgagaagca gttcagctac cttggacatt caattgagtc ccaaaagttc ttttcaactt       720
     gtaaaaagtg caccgaagct ggtaaaaaaa gtcgtgtcta ctcgtttgat gagagcaact       780
     ttaaagcaaa cggaaatcgt cattatagag tatgtatgat aactttatat tcctacgtgc       840
     aatttattaa gtggtaatta aattcgttaa tttttatcga ctattttttg cagaactcgc       900
     acaaagatgt ggctttggaa attgaaatcc cacgagaaaa tcataaggtg aacgagtttt       960
     ttcactcaaa tcaaaacaaa tataataaaa acgacccaat ccaatcaaaa ttcaactcga      1020
     atctgcaaga tttggtctcc gttgatgggc tccctttcag ttttgttaat gggctaggat      1080
     tcaggaactt agtatctgac cttaatccac gagttatagt tcctgaccga gtgaccttgg      1140
     caagaaaatt agcaaacacg gtcaacaaga ttgtatgtaa ttttgactta ctgtaataca      1200
     cataaaacta taataaaact ttatgtatgc aattttcccg cttgtgtgaa ttccagataa      1260
     aacctaaaat taaagatcca ctcaaccacg ttcaggatta caatgttcac atatcatctg      1320
     acatatggac aagtagacag ggtgacggaa ttatgggact taaataccat tatattcaga      1380
     aggatgaaca aaaccggaca tggaaattgg tgtcaaacgt cctttcagcc gtgcaattta      1440
     atgagcgcca caccggagaa aatataaagc acaaattcca gcaatctctg gactcgttag      1500
     gaattagcac gaccaaggtg actaatacgc ataaacatgc aattttgtta atgataaata      1560
     aataatagtg caatactttt aaactcaggt cggttatctt gtgactgacg gtgctagcaa      1620
     tatggtgtgc ggcttcaaga attggaccga ggaggctgaa aatcttgtga cggatgaaga      1680
     cgattcagct atcgaccttg aagacgattc acaaccggaa gactctgata ttagtgagag      1740
     ctctgaggat gaagaggaag aaagtgatgc agatgatgaa gtcactgtag cgacgccaaa      1800
     tattacaatt ggtgaaaaag tcaggatttc ttgttatgca cataccttgc aattagttat      1860
     caaagacgtc attggaaaag gcgggagacc taaagaagtt ctggattgtg ctttcaaaat      1920
     tgtaaagtat ttcatgcggt cgaattattg gagaaagcga cttaaaaaag tcgtgggcaa      1980
     ggtgttgata aagccagctg ctactcgatg gaattatatt tactacgttt tggagcgctt      2040
     atgccaggta atttcagatc gacctatttg aatgacaata aatctcaatt ttaatttacg      2100
     atttaaattt tggggttttg caggataaag tgtacggtga ggtttgcaac ctaataagag      2160
     aagccagcac ttgtcccaag aagccaaaaa atctgccacc cacaccaagc atcgagccgc      2220
     aagaaaaaat gatcgaaata aaaaatctcc tgaagccaat atgtgacgca acgaataaac      2280
     ttcaaggtga tggggtaacc agtagtttga tttactactc gatagtcaat gcatttaacg      2340
     gtacgaatgt gcgcaacata atttgctcgg ttcctttgac gatgatacgt ataatttatc      2400
     cagttccccg attcaatttt tcttaatttg tagaaattgc taaaactcca actacacgat      2460
     tcacttgtat gaaagcacaa ttactggatg gactgaaaaa tcgattcgag aaggcaataa      2520
     ataatgaccc ccacattatc ctgagtgctt tgttggaccc tcgtcaaaaa tccgacgtgt      2580
     ttaaaagtac gaacacattt taatcttata tgtaatacgt ttaatgttga acaattttta      2640
     gtcaaacctg ccgtgtatgg aaccagaagc cttgaaactc cttcaattga caaggtcact      2700
     gatatgctca agtcatattg caaggaagat ccttcggctg aagcagcatt acacacattt      2760
     cctgaaaacg aagataacga cgacgatcca ttttccatgc tgccaaggat tgtcaattcg      2820
     agtactactg tcgctcatga agtagacaaa tatttagctc tacaaagaga accgtcgaaa      2880
     tccgatccac tagaattttg ggctaaaaac gaaaccagct ttaaagaatt gtcgaatttg      2940
     gccagtcaat atcttgcaat tccggcatcc acgggcagtg tagagcggct tttttctcta      3000
     ctgggatcat ttggacgttc aaggagatca agtctgaacc cgaagtcttt ggaaaattta      3060
     gtgcttcacc gagaatatcg tcgtccgatt ttgatgagag ctcatccagc cataaatctc      3120
     tcaaacaaaa ggaaaataag tctggagccg gacaacaagt gcaataagcg gaaaacattg      3180
     agtacgcgag caatttgttt tattatttat atgaattcta tttttagtag gaggaagagt      3240
     acacaaaggt ggtaatattc gatattgatg ccgttggata ttttgttcta tttcgttgaa      3300
     cgcagagccc tcagaaaatg ttcgagatta ttaaattgtc cgaaaattaa aaaatatatt      3360
     ttacatatga gtatgataaa gtagtcatct aagatcacca gtggctgctg gggagcttaa      3420
     cattgtggga taaaggggga cttgtgcaaa atacgatttt gctgaatttc cccgtctcaa      3480
     tgaagataat gagaatgaag aattttgaaa atctatccaa aattggattt ttgaagatta      3540
     gtgaaggatt tggttctgca agttattata caaattatct ctttgactgg tgtaccctcc      3600
     tcttaaatga caatgaaacc ataatatatt tgatcacatt tgactataat caattatatt      3660
     ttgattttaa tgtcaattgc taagaatgga attcatctaa acaataaaac aaaatggtac      3720
     taattcgctc aaaaattagt taataagtag ataccgtata tatttgtaat acaaatatta      3780
     gagtggatat taccgatttt agcacataaa tatttcaaaa agcctctacc tctaagaatc      3840
     ttggaaattt tttgactcaa atgctttcat cattaccttg aaatttatgt caaatttaaa      3900
     gttcgagttc gcccgagtaa tgcggcatat gcatattaca tagtaatttg aactcaaatt      3960
     gtggatgggc taccatgtgc aaattgtgaa tacaaaaata aatgaataaa ccgtcgcaaa      4020
     cgcatgtagc taaagggtga aataagtgtc aaatatacgt caaaatgaat atcatattgc      4080
     ttttgccaca acttttggga cactcaattt cactgtattt catctttaga ttcaatttga      4140
     gtgaaaatct cattttcccc cagaccacac ccccaagcgc cagatggtgt ggcacagctc      4200
     gggagcacta aatttcactt atatgtattt catccgtagc ttcaatttct gaaaaaaact      4260
     catttttccc cgaccacacc ctctggcgcc aaagggggtt gtcttattgg tcccacaagt      4320
     tgataggatc ctcctcgggt cctatgcgta atgtcgaaaa ccgatgtcga ttatctcgat      4380
     ccgttctcct attatcctgt cttcgcataa agtagctgaa gctacttaat aaatgaacga      4440
     atatttgaat gaataaatga acgaatattt gaatgaataa atgaatattt gaatgaataa      4500
     ataaatattt gaataaatta gtgaatattt tagtgaatga ataaatatgt taatgaatgg      4560
     gggtccccgc aatgaatgaa tatttgaatg aatgttgcca attgtcaatg aatatatatt      4620
     gaatgaatgt tgcctgcact tcatgacaat gaatgaatat ttgaatgaat aattttttgt      4680
     tgaacacgtc tg                                                          4692
//
ID   hAT-3_LMi   repbase;    DNA;    INV; 4666 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4666
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3028-3028 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1849..3219,3192..3482,3434..4501)
FT                 /product="hAT-3_LMi_1p"
FT                 /translation="MSSRRRDTGRHYASGSAKRKARDEKERKTDAVISKTR
FT                 KLSEFFNVQNDFAEYTENEVQNTKAVVDCKDDSYTTEDSSECATFSDVVTF
FT                 STSDTAIEQTASLPSSAISSPSQTEMKSMGSPIGPETWSSRQREVEKIIQA
FT                 CDVTASCASGTQSESKMYSNDIGEWPNNFDRDYWIMKGSSEVQHINSSFLS
FT                 SKKIYEKENKPRFCRKSFFTYKHKLTNKTYMRDWLCFSESKGRLFCFVCKV
FT                 TDSDGSPRFTKDGLDDWKNANILLKRHEESSSHRKAIISLLVRKNKDARVD
FT                 SQLVSQIESEQKYWRTLLERIVAVISFLAERGLAFRGSDEIVGSPHNGNYL
FT                 GLLELLAKFDVFLSQHIRIHANKGKGHTSYLSKTTCEEFIHLIASAILDHI
FT                 ICEIKRFKYYSVSLDSTPDISHVDQLTLIVRYVLPSGPVERFVKFLDMEGH
FT                 TAEQLSLSLLSFTTLPKLTIFLAENGINIKDCRGQSYDNASNMSGRYTGLG
FT                 ARIKDINKYAEYIPCFSHSLNLVAKCAAECCTEASIFFDFLESLYTFFPLL
FT                 PIDGAFFKPLYIFSASTYRWGLLLKALKNDSTKIPILKRLSDTRWSARADA
FT                 TKALLFGFNTIKQVLNDISTNMHQKVECRNQAYGLVLKMSKLETGIMCVAW
FT                 NRILERLQATSVSLQSSDQDLSTGYALYKSLHEYIQSMRFTFSEIEAKAKS
FT                 LTSCEEYQQETSRRHKRNTKYDHFSGSTTLDEVVENQTPGEHFEFQVFIVI
FT                 IDNVLAALATRMEKYHHLTNVFGILRDFKSLTAEEILKRTPNIVNAYPDDL
FT                 EESLGDELVQFAELLKTDIAAAIDRKNNEALELQIYKLLMENSLGSCFPNV
FT                 EIALRIYLSLMITNCSGERSFSTLKRIKNELRNTMGQERLNDLSIMNIEYI
FT                 CSEKLM"
XX
SQ   Sequence 4666 BP; 1453 A; 906 C; 977 G; 1330 T; 0 other;
     cagtgccgga ttagccacgt agcaagagtt agcaaatgct acgggccccg cgcatttggg        60
     gggccccgcg cctgggcgcg aatactcttg tctttttttt tcaagaacag ggtaatcggt       120
     gtgtcggagc taacctcgat ggccagcaat agcttcttag tgacatttag ttcatgcaat       180
     cctgttgctg tattcgctgc atcttgagcg gtatcaatac tcacggtgct gtgagaacgg       240
     ctgatacgct accgaaacgc cacgtgtgaa aggtagcagg tgctgccagc agcgcgcagc       300
     cctctgcaca gatggcgccg ctggctatga tcgccgcgtg tgtagacgcc ccatttgttt       360
     gcactgtgga acgctggccg ctgctgccgc gttacgaggc cttgtaaaag cgcaggagtg       420
     ttgccgcaac agcgataatt aaaaaagggg gcagtcgaga caagtcccga gaggtaccga       480
     catctaacag tcggtgcttg gaggccaatc gtcaacttcc tttacaaagt gggtgacatc       540
     gattttatat agtgattcca aagttgctga ctgaaaagag ggaaccactc aagcataagg       600
     taaggtactt gtctgttcat atatacccca aagtttaaac aataaaaata ccgattcaat       660
     acaaattctt ttcagtgaaa caataagagc aacgtctccc attttcgtaa aattgatgag       720
     agagattctt acgtgacaag agagcattgt tttctttttt cttcaaaatt gtattttgtt       780
     gtctctgagg aagtaaaact tttaattacg aaaaatacac gaatcaggtt tatttatagc       840
     ctacaatgtt tagttacaaa cgcccataca ctacagttga cgtataacat tcccaatact       900
     agaagacatg tgaaaatgta agtgacatag ttgtcttgtg tattcctgag tcttccccta       960
     caccagtctg aaaacctgtc tgctaaatag cggaaattat tttaaatttt cgattcgtta      1020
     gaaagggcgc tgcctcttct ttcgtgattt tcaggaagaa agtgattcgc caaccaaata      1080
     tgtttccact gttaaatctg taaaaacttc tattttctgt gtttatttgg tttacatata      1140
     tctttttctg cctttcgagc accataattc tgccattttc gctaaaaaca gttgctaaca      1200
     cttaaccaca acagaactta actccactcg aagtgtgctc cagagccgtt accagcgatg      1260
     tggaagtcgt aggatactct tagcaacacc aggctggtcg caagctgtgt taaaaaatga      1320
     acaacttata ggaagaagca gtgacacttt ctgcgggaac cattaatcat tttgcaggac      1380
     aatgcacggg cgcatatggc gcaagtggtg acggatttgt tcgattgccg gtctcacaag      1440
     tgttgtacca cccgccacac tcccagaact taagcccctg tgacttcaac ttgattccta      1500
     agatgaagga agcacttcat ggcattcgct tcaactgtaa cagagtttcg ttggacaata      1560
     gaccgctccg ctcgaacttt caacacaacc ggtgttgcta agagtatcct acgacttcca      1620
     catcgctggt aacggcttgt acacaatgct ggtgactact ttgaaggaca gtaaagcttt      1680
     gaaacgtgta gctattttat ataaattgca aataaatagt tgccactatt aaagttccaa      1740
     ccctcgtatt atttatgata cttacgcgtt acgcagtccg attaaatagt agtgttccat      1800
     tttattttgt aatttatttt cccttctaca cagatctggc taaccaccat gagcagcaga      1860
     cggagagata ctggacgcca ctacgcttct ggaagtgcaa agcgtaaagc aagagatgaa      1920
     aaggagagaa agacagatgc tgttatatct aaaacacgta aactgtctga gttttttaat      1980
     gttcagaatg attttgccga atatacagaa aatgaagtac aaaatacaaa agctgtagtt      2040
     gattgtaagg atgatagtta cactacagaa gattcatcag aatgtgcaac tttttccgat      2100
     gtagttacgt tttccacaag tgatacagca attgaacaga cggcaagtct tcccagttca      2160
     gccatatcgt ctccaagcca aactgaaatg aaaagcatgg gaagtcctat cggcccagag      2220
     acctggtctt caagacaaag agaagtcgaa aaaataatac aggcttgtga tgttactgca      2280
     tcttgtgcaa gtggaacaca aagtgaaagt aaaatgtatt ctaacgatat tggtgagtgg      2340
     ccaaacaact ttgacagaga ttattggatt atgaaaggaa gtagtgaagt tcagcatata      2400
     aacagtagtt ttttgtcttc aaagaaaata tatgagaagg aaaataagcc aagattctgt      2460
     agaaagtcgt ttttcacata taaacataaa ctaacgaata aaacttacat gagagattgg      2520
     ttgtgctttt cagaaagcaa agggcgactg ttctgttttg tctgcaaagt gacagattct      2580
     gacggctcgc cacggtttac gaaagacgga ttagatgact ggaagaatgc aaatattttg      2640
     ctgaaaagac atgaagaaag cagttcgcat agaaaagcga taatttccct gttagttcgc      2700
     aaaaacaagg atgcacgtgt cgattctcaa cttgtaagcc aaattgagag cgaacaaaag      2760
     tattggcgaa cactcttaga acgaattgtt gcagttataa gttttttagc tgagcgaggg      2820
     ctagcatttc gaggtagtga tgaaattgtt ggttcacccc ataatggaaa ttatttaggg      2880
     ttattagagt tactagccaa gtttgatgtg tttctgtccc aacatatacg tattcatgca      2940
     aataaaggaa agggacatac gtcatatttg tcaaaaacaa cgtgcgagga atttatccat      3000
     ctaattgcat cagccatact ggatcatatt atttgcgaaa ttaagagatt caaatactat      3060
     tcagtctcac tggattctac tcctgatata tctcacgtag atcaactgac tctgatagtg      3120
     cgctatgtcc taccatccgg accagtggaa agatttgtga agtttttgga tatggagggt      3180
     catactgctg aacaactctc cctaagctta ctatcttttt agcagagaat ggcattaata      3240
     tcaaagattg ccgtgggcaa agctatgaca atgccagtaa tatgagtggc aggtataccg      3300
     gcttaggagc acgaattaaa gatataaata agtatgctga atatattccc tgtttttcac      3360
     attcgctaaa tttggtcgcc aagtgtgctg cagaatgttg tacagaagca tccattttct      3420
     ttgatttcct tgaaagcctc tatacatttt ttccgcttct acctatcgat ggggccttct      3480
     tttgaaagca ctgaaaaatg atagcactaa aattccgatt ttgaaaaggt tatcggacac      3540
     taggtggtcg gccagagctg atgctacaaa ggcgcttcta tttggtttta ataccatcaa      3600
     acaagttttg aatgacatat ctactaatat gcatcaaaag gtagagtgcc gcaatcaggc      3660
     ttacggactg gttttgaaaa tgagtaagtt ggagacggga ataatgtgtg tcgcatggaa      3720
     cagaatccta gaacgcttgc aagcgactag cgtttcgctg cagtcgtctg atcaagatct      3780
     gagcaccgga tatgcacttt ataaatcctt acatgaatat atccaatcaa tgaggttcac      3840
     attttcagaa attgaggcta aagccaaatc cctgactagc tgtgaagaat atcagcaaga      3900
     aacttcaaga cgacacaagc gaaatacaaa gtacgaccat tttagtgggt caactacact      3960
     cgatgaagtt gtagaaaatc agacacctgg agaacatttt gaatttcagg tgtttattgt      4020
     gataattgac aatgtgctgg ctgcattagc tacacgcatg gaaaaatacc atcacttgac      4080
     taatgttttt ggaatattac gggactttaa atctcttaca gcagaagaga tcttgaaaag      4140
     aactcctaat atcgtgaatg cttacccaga tgatttagaa gagtcgcttg gcgacgaact      4200
     ggtacagttc gctgagctgc tgaaaacgga tatcgctgct gccattgaca gaaaaaacaa      4260
     cgaagcttta gaactacaaa tttacaaatt gttaatggaa aattcattag gatcgtgttt      4320
     tccaaatgta gaaatagcct tacgcattta cttatcttta atgatcacca actgcagtgg      4380
     agaacgttct ttttcaacgt taaagcgcat taaaaatgaa ttaagaaata cgatgggaca      4440
     ggaacgtcta aatgacctca gtataatgaa cattgaatac atttgctcag agaaattgat      4500
     gtaacttgta ttatttctaa atttgccgaa attaaatcga gaaaagttta tttgtaataa      4560
     tttgttttat tttatatcct aaaccatatg acctaaagtc ctaaacaacc caagggccct      4620
     ttgtcagatt ttgctacggg ccccgcgctt gcttaatccg gcactg                     4666
//
ID   hAT-3_PBa   repbase;    DNA;    INV; 2416 BP.
XX
AC   .
XX
DT   21-MAY-2012 (Rel. 19.03, Created)
DT   21-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2416
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 651-651 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus, incomplete sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(250..471,464..1177,1138..1494)
FT                 /product="hAT-3_PBa_1p"
FT                 /translation="SVDARDSSASKIFENFKNLLQEKSIPLQNIVGMASDN
FT                 ASVMIGCNNSFMSRLKLEIPGLITFNCICHSSALIATLLRKAYEKLPESCE
FT                 NLIRGVSSYISGSAKKCAILVEFQDFFNIERNKILKLCNIRWLILHKCVER
FT                 LLTNWNVLQSYFILAVVEDKIKAAEIILDQLNDKSIKAYFLFLKYSLHYFN
FT                 SFNAFFQSRKILIHKLYENSQRLIAQNFIKSEFLENICNLNLNNEEIRQAL
FT                 EDTYVGSDCESFLETQSVEFRKEIKIKCDFYLTAVREILKRLPYNDVVIKQ
FT                 LMFLQPEMRFIMKAEIKLKINALYHEGRNKIKDLTLIATQIGNIDTIKLVH
FT                 EWRNLPLIYNNIEKQELAILEIDEMWKKILEFKDLHEEKMFPHLELLVQVV
FT                 LSFPHSNAEVERIFSMVTDIKTKKEIIYRSMYPRCVV"
XX
SQ   Sequence 2416 BP; 882 A; 273 C; 318 G; 941 T; 2 other;
     tgaaagatat ctgcattgat cctgaaattg tatcagatct atcactagcc cgagataaat        60
     gtaaaaatat tgttattaat gttatcgcga aacgtgaaat caataaaatt attaatgatw       120
     tacaaacctg caaatwttct gtattaattg atgaaagcac agacatttcc gatacaaaaa       180
     ttatttgtgc tcttgttaaa tatttatcgc cgttaaataa aaaagtaaca acaaaattat       240
     tagaaataat ctgtagacgc aagagatagt tctgcaagca aaattttcga aaactttaaa       300
     aatcttcttc aagagaaaag cataccatta caaaatatag ttggaatggc aagcgataat       360
     gcatcagtaa tgattggatg caataactct tttatgtctc gtttaaaatt agaaataccg       420
     ggtcttatta catttaattg catttgccat tcttccgcgt taattgctac gtaaagcata       480
     tgaaaaatta ccagaatcat gcgaaaattt aattcgagga gtaagtagtt atatctcggg       540
     cagtgctaag aaatgtgcaa ttttagttga gtttcaggat ttttttaata tagaaagaaa       600
     caagatccta aaattatgca atatcagatg gctaatttta cataaatgtg ttgaaagatt       660
     attaacaaat tggaatgttt tacaaagtta ttttattctc gcagtagttg aagataaaat       720
     aaaagccgca gaaatcattt tagatcaatt aaatgataag tcaataaaag catatttctt       780
     atttttaaaa tattcattac attattttaa tagttttaac gcattttttc agtctcgaaa       840
     aattttaatt cacaagttat atgaaaatag tcaacggtta attgcacaaa attttataaa       900
     gtcagagttt ttagaaaata tttgtaatct aaatttgaat aacgaagaaa ttagacaagc       960
     tcttgaagat acatatgttg gatctgactg cgaaagtttt ttagaaacac aatctgttga      1020
     gtttaggaaa gaaattaaaa ttaaatgtga tttttattta actgcggttc gagaaatatt      1080
     aaaacgcttg ccgtataatg atgttgttat taaacaattg atgtttttac agcctgaaat      1140
     gcgctttatc atgaaggcag aaataaaatt aaagatttaa ctcttattgc tacgcaaatc      1200
     ggtaatattg atacaattaa attagttcat gagtggagaa atctaccttt aatttataat      1260
     aatattgaaa aacaagagtt agctatttta gaaatcgatg agatgtggaa aaaaatatta      1320
     gagtttaaag atctccacga agaaaaaatg tttccacatt tagagttact tgttcaagtt      1380
     gttctttctt ttccccattc aaatgccgaa gtcgaacgta ttttttcgat ggtaacagat      1440
     ataaaaacta aaaaagaaat catttatcga agtatgtatc cgcgatgtgt agtatagatc      1500
     aagtttccaa gctgaaggca tcaattgtac taattttgaa atagattccg aacatttaag      1560
     tttacataat ccataaaatt tatacaacga cgatgcgatt catgtgatgg ttcttaactt      1620
     tttaattcgt ttttttacat ttgactattt ttatttatat ttgttttttt tatgtttcat      1680
     aatattatat ttatagtagt atattttact catttaacca atattttaat aacatgctag      1740
     tcatacgcaa caattataac tgttatttta ttttttcaga tctcttattt cttcagatta      1800
     tatattctaa tttattactt tctgtacttt atgttctttc taattcgttc atgaaaagaa      1860
     tcatttaaca tttattatat tgtttcagtt ccatatatta tttatgttta ttatatttta      1920
     taaatattaa gtaaaagttt atgtttatgt tctttaaagt taagtttatt tttatttaaa      1980
     ttttattaat tcattaaata catatagtaa agttgttttg tttatagttt ataaaatatt      2040
     atgtttatat tatatgaaat atttattttt aatttaatga aaaatatatt tttgttgtac      2100
     gaatactggt aaggtttttg gcagtttttc cttacccatg caacaaatgt tggtattctt      2160
     tgattctgcc aaataaaatg ttttcgttat gttatataag aagattgttt tatttaaaaa      2220
     tttccttaat accctttcta tgtattattt tatttttaat attagattta atatattata      2280
     tattacattt aatacatata taaatataca ctaccattta taaattagag aatacttgca      2340
     ttttttttac atcttatgaa aaattaaatt ttgataaaaa agttatagag aagtttttaa      2400
     aaataaattc taaaag                                                      2416
//
ID   hAT-3_RPr   repbase;    DNA;    INV; 2708 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT-type DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2708
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3338-3338 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           391..2031
FT                 /product="hAT-3_RPr_1p"
FT                 /translation="MDKWLNQLRNVNPKKKKPKRLRVHRKISRKYKKKKRT
FT                 YNESFLQYGFTFNNYHDKQQPLCLICNETLADESMKPTKLKRHFETKHPTH
FT                 SNKTVEYFERLLRDSKKEKLSFEKYATVQEKYLLASYEASFLTAKAKKPFT
FT                 IGEELVLPVAVKVTELIHGKKCADELRKIPLSNDTVCKRITEIAEDLFQQL
FT                 MERIKQSPKFAIQLDESTDIQDSAQLSVFVRYCHDNNVYEDLLFCWALEGH
FT                 TTGKDIFLKVDDFFKQEGLEWGNCVGVCTDGGAAMTGKNVGFVERLKAEGN
FT                 NHITFTHCIVHREALVAKQISVDLNSVLQNAIKIINFIKGRSLNSRIFANL
FT                 CHNMGSDYERLLFHTEVRWLSRGRTLKRLVDLKNEVMLFLSDSNSEYENFF
FT                 HNDIWLCKLCYLSDIFEKINELNLSLQGENTNILHLINKVKAFIKKLIIWK
FT                 TKIESNSYEMFNSMSDFIIDNNLSLSCLQEVQQIILGHLDNLENQFQKYLH
FT                 SDIESNQFDWVLKPFLIEMDQVQHLSLKAQXEFAELSADAEVLNLNFPRKV
FT                 "
XX
SQ   Sequence 2708 BP; 990 A; 377 C; 456 G; 884 T; 1 other;
     cagtgcttct taaactatgg gtcgcgacct ttaggggtcg cggaaatata ttgtgaactg        60
     ataaattaat tcacttatta acattttagt aacaagtaaa tagaaaaaac aagttttttt       120
     ggtttacttc agtaactcgc gaacgttcag caagtagtgg ggatatatgt tgtagtgatc       180
     ctatcaaaga taccatgcaa atgaagtata agtttgttgt tctgtgacag tacacttttc       240
     aatggagttt aggtttcgcc caattgcaca gtgtccatta atctttcaaa tacatggtaa       300
     atgttaatgg ctataaagtt ctacgtttca tacaaattaa aaacatcctt acttatttac       360
     gatttatttt agttgaattt gtactctaaa atggataagt ggctaaatca gctaagaaat       420
     gtgaatccga aaaagaagaa accaaagcga cttcgagtac atcggaaaat aagtcgaaaa       480
     tacaagaaaa aaaaaagaac atacaatgaa tcatttctgc aatacgggtt tacttttaat       540
     aattatcacg ataaacagca accgctttgt ttaatctgca acgaaacttt ggctgatgaa       600
     agcatgaagc ccacaaaatt aaaaaggcat tttgaaacga agcatcctac ccactcaaat       660
     aaaacagtcg aatattttga aaggcttttg agagattcaa aaaaagaaaa actaagtttt       720
     gaaaaatatg ctacggtcca ggaaaaatac ttattagcat cctacgaagc atcgttttta       780
     acagcgaaag cgaaaaaacc ttttacaatt ggtgaggaac ttgtattgcc cgtagcagtt       840
     aaagttactg agttgattca tggaaaaaag tgtgcagatg aactgcgtaa aattccatta       900
     tcaaatgata cagtttgtaa aaggattaca gaaattgctg aggacttgtt tcaacaatta       960
     atggaaagaa ttaaacaaag cccaaaattt gccatacagc ttgatgagtc tacagacatt      1020
     caagattcag ctcaattgtc agtatttgta cgatattgtc atgataataa tgtatatgaa      1080
     gacttgctat tttgctgggc attggaaggt catacaacag ggaaagacat attcttaaaa      1140
     gtggatgatt tttttaaaca agagggattg gaatggggta actgcgttgg tgtttgtact      1200
     gatggtggtg cagccatgac aggaaaaaat gttggatttg tagagagact taaagcagaa      1260
     ggtaataacc atattacatt cacccattgt attgttcaca gagaagctct tgtagcaaaa      1320
     cagatctcag tagacctaaa ctcagtgtta caaaatgcga ttaaaataat caattttatt      1380
     aaaggccgat ctctaaatag tcgtattttt gcaaacttat gccataatat gggatctgat      1440
     tatgaaaggt tattatttca tacagaagta agatggctct cgagagggcg aactttaaaa      1500
     cgattagttg atttgaaaaa tgaagtaatg ttgtttttat cagatagtaa ttctgaatat      1560
     gaaaattttt ttcacaatga catttggctt tgtaaattat gctatttatc agatattttt      1620
     gagaagataa atgaactaaa cttgtctctt cagggagaaa atactaacat tctccatctg      1680
     ataaataaag taaaagcatt cataaaaaaa ttaatcattt ggaaaactaa aatagagagc      1740
     aactcctatg aaatgtttaa cagcatgagt gactttatta ttgataataa tttaagttta      1800
     agctgtcttc aggaagtaca acagattata cttggtcatt tggacaactt agaaaatcaa      1860
     tttcaaaaat atttacattc agatattgaa tctaatcagt ttgattgggt attgaaacca      1920
     ttcctgatag aaatggatca agtgcaacat ttatcactaa aggcacagsa agaatttgca      1980
     gaactttctg ctgatgctga agtcttaaac ttgaatttcc caagaaaagt ttagcaactt      2040
     tttggattgg agttaaaaaa gaatatccaa caatctctga cgaagcattg aaagttcttt      2100
     tgccatttgc tacgccacat acttatgtga atcatcattt tcaactttaa cgtcaataaa      2160
     aacaaagtac cgttccaata taaaaaatat tgaaaatgct atgagacctt caataacaaa      2220
     tatttatccc agatttaatt tattgtgtga aggtaaacaa gcacatcctt ctcattaaat      2280
     aattaaacga ttttaatacg aaacattttt tatggttttc tagttttaca ataaaagttt      2340
     atttgtgata atttaaaata aaatttatat ttatgttttt tatttttaaa aagtgttgat      2400
     attgatttga tgttttaatt gcttttataa ttatcaatat ttttctaaat atataagcct      2460
     aaaattaata tacggttttt tttttatttt tacaaacttc aattttttcc tgtttaaaaa      2520
     aatcgaggat aaatttagcg gtgttacggc ctgatgtttt catatataag cttatatata      2580
     caatcatatc caaatatgac cttaaatcga cttatagcct aatcattagg tgttaggata      2640
     taaagaggtc ggcaagaaat ttttacttta aaaaggggtc gcggtcgcaa aaagtttaag      2700
     aagcactg                                                               2708
//
ID   hAT-3_TCas  repbase;    DNA;    INV; 3621 BP.
XX
AC   .
XX
DT   05-JUL-2012 (Rel. 24.09, Created)
DT   05-JUL-2012 (Rel. 24.09, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from Tribolium castaneum - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-3_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3621
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1710-1710 (2019).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. Fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1233..2654,2667..3530)
FT                 /product="hAT-3_TCas_1p"
FT                 /note="transposase."
FT                 /translation="YRWQFIKKIDSYFIKKPRLEIAQSKNLPTTTTHASAS
FT                 TATLPTFTLDEEKSCSSVINDIQPILSTSTSDSDQIKTSVSQSEFASDIAC
FT                 YIGNNIDESSKAMLLEKHWQPPPNYTFPHCVVNKKGKQTKKYAQKSHLDKF
FT                 HWLVLSHKGQGLYCKYCALFAIAPGGGIQTKTPLCRLVKEPLKAFDNLLGE
FT                 NGVLLTHQRNKYHELAVENELIDVCAEIIQENILQNIREAKFFSILFDETT
FT                 DISHISHLSLSFRYFHNGIIKEHFVTFCDTYDALRREENNSGDIEPRLTGV
FT                 SLAKIVANLCTKFNVDITWCVGIGTDSCSVMASETKGAVQELTKIAIHAKR
FT                 CPCNNHVLNNSLARSSKVVSCRNTSGTMRKVVAFANASAKRHEIFKKELGV
FT                 AMQGICETRWVERHDGHLQFQGDNLVKICSALEKISTWQDSKTANDAYCLL
FT                 QTLRSSDFIISSICLSDVLGGYLCFCVSKATVYIKSYILSLFTHTHRQSLT
FT                 FYFSGATVSLSRILQSNSIDLKKAADAINDTISVLQNKRENADVIYRQLFE
FT                 EAKEVAGQLDVEIKCPRIVSRQIHRANNQPAQSAEEYFRRAIYIPLLDSII
FT                 NDLEDRMSLEVLNLFQLSVFMPKSEYSNQDIETVKQLATDYTLLLDNTPVS
FT                 VVVNEYRLWMVKWQRSQDMPQSISDLILNCDIEMYPNIRKFLCIMATLPVS
FT                 IATAERSFSTLRRIKSWLRAAMVEERLTGLALLHVHKNIPIEADEVITRFG
FT                 RRRKRKIDFVI"
XX
SQ   Sequence 3621 BP; 1162 A; 644 C; 668 G; 1147 T; 0 other;
     ttttccactg aaaaaatcat gaaatgctgc gataaatctg caaaactaca ataaagatta        60
     agaactgctg atacatttaa acgtaaatta tgccaaaagg taggcttttc aatgtctttg       120
     taataatttt ccaataaaga aagtgaacca aacagtcatt cgttattcgt gttttcctcg       180
     tcatctctca tttgtcaaca taagtttctt gcatcaaaga tgcaataatc attccacata       240
     ggcaatgtaa taattgtgat gccccaaaat tcgtacaacg ctcaaaatat ccgaataaac       300
     attttcccgc catttatggt tactgttttt gacctagctc agtggcgccc ccaacggtaa       360
     ttttacttcc gaattgtgcg tgttttattt ttgactaacg tctaggtaga cctaacctca       420
     atcggaacga cttaaactta cctcaatcaa ctgttttatt ctcataatag ttaatacagt       480
     actaagttaa aaaactttaa aatttcatta taagtaatag cgttcttaaa agtggttggt       540
     gcaaattcat tacaagaaat ggtaagtaag taataagttt cttcattatg ccactgtgtg       600
     tgtgttcaaa ctcaaatgtt attgttgtta atgttcttat agtacttcgt aggtagataa       660
     gtaggaatga aagcatataa aaataatctt cgttgaagtt ttaaaaagca cttagcgacc       720
     tagcgaaaac gatgcaaaac tactgcacga cacaaaatca ttgggcttta ttaacaggcg       780
     tttacaaata gtgtaaatac ttagtgatct taactattta ctttatttat atattataga       840
     tttttaaaaa ctataaaata ttaaagaagc taacaccgtt ttgcttgttt tttaacacta       900
     tacctaacgt attatttaat gtacctaata acaattcact ttactacttt tttttgttta       960
     aacgtgctaa ttgctgagac tactaataat taaaaattac tgctctggtc ctgtgattta      1020
     gtggtgaaat ttctggtaat taacctatga atcgcgggtt caagccccgt ccgtacctac      1080
     atggctaata tttacgggat atttgttttg gtttgagtct gggtgttttt tagtctgttg      1140
     tctgttgtgg tgtggggtgt gaaatttgca tggctttgct tgcagggtga ctctaaggga      1200
     aaaggagatg gtagtggtgg gttgaaacgt aatacaggtg gcagttcatt aaaaaaatag      1260
     attcatattt cataaagaaa ccaaggcttg agattgctca gtcgaaaaat ttacctacaa      1320
     ctactaccca tgcttctgct tctacagcta cattgcctac atttacctta gatgaagaaa      1380
     aatcatgttc ttccgttatt aacgatattc agcctatatt atctacgtcg acttcagatt      1440
     ctgatcagat aaagacttca gtttctcaat cagaatttgc ttctgatatt gcatgttata      1500
     tagggaacaa tatagatgag tcatctaaag ctatgttgct tgaaaagcat tggcagcctc      1560
     cccctaatta cactttcccg cactgtgttg ttaataaaaa agggaaacaa acaaaaaaat      1620
     atgctcagaa gtcccacctt gacaagtttc actggcttgt tttgtcgcat aaaggccagg      1680
     gtctttactg caagtactgt gctttgtttg ccatagctcc tggaggtggt atacagacaa      1740
     aaacaccttt atgtcgactc gtaaaagagc ccttaaaagc ttttgataat ttgcttggtg      1800
     aaaatggtgt tctgttgaca caccagcgaa acaaatacca cgaattagct gtcgaaaatg      1860
     agttgataga tgtttgcgca gaaattattc aggaaaatat tttacagaat atacgggaag      1920
     ctaaattttt ttcaattttg ttcgatgaaa caacagatat atcacatatc tcacatctga      1980
     gcctatcatt tcgatatttt cataatggta ttataaagga acattttgta actttctgtg      2040
     atacttacga tgctcttcga cgtgaagaaa acaattcagg tgatatagag cctcgattga      2100
     caggtgtatc attggcgaaa atcgttgcaa atctgtgtac caaatttaac gtagatataa      2160
     cttggtgtgt gggtattgga actgacagct gctcggttat ggcatcagaa acgaaaggtg      2220
     cagtgcaaga attgacgaaa atagccattc acgccaaacg atgcccgtgc aacaaccatg      2280
     tacttaataa ctcgttggct agatcatcca aagtagtttc ttgtcgcaat acatctggca      2340
     caatgagaaa agttgtagca tttgccaatg catccgctaa gaggcatgaa atttttaaaa      2400
     aagaactcgg agttgccatg caaggtatct gtgagacacg ttgggtagag aggcatgatg      2460
     ggcatcttca gtttcaagga gacaacttag tcaaaatttg tagcgctctg gagaagattt      2520
     ctacttggca agacagtaaa actgctaatg atgcctattg cttgctgcaa acattgcgca      2580
     gttctgactt tattatatcc tccatctgtt taagtgatgt attaggtggg tacttgtgtt      2640
     tttgtgtttc aaaataaaca atttaagcta ccgtttatat taagtcatat atccttagtt      2700
     tattcactca tactcacaga cagtcactaa ctttttattt ttcaggcgct actgtatctt      2760
     taagcagaat actgcaatcg aactcaattg atttaaaaaa agctgcggac gctattaatg      2820
     atactataag tgttctacaa aataaaagag aaaatgcgga cgttatttac cgacagcttt      2880
     ttgaagaggc taaagaagtg gctgggcagc tagatgtaga aattaaatgt cccagaatag      2940
     tgtcaagaca aatacatagg gccaataacc aacctgccca atctgctgaa gagtatttcc      3000
     gcagagctat atacatccct cttctagatt caataataaa tgacctagag gaccgtatgt      3060
     ctcttgaagt acttaatttg tttcagctca gcgttttcat gccaaaaagc gaatacagta      3120
     atcaagacat tgaaactgtg aaacaactag caaccgatta tacattgtta ctagataata      3180
     ctccagtttc tgtcgttgta aacgaatatc gactgtggat ggtgaagtgg cagcggagtc      3240
     aggacatgcc gcagtcgatt tctgacctta ttttaaattg cgatattgaa atgtatccta      3300
     atataagaaa atttttatgt attatggcta cactacctgt tagtatagcg acagcggaaa      3360
     gatctttctc tacattacga agaatcaaat catggctaag agctgcaatg gttgaagaac      3420
     gtctaaccgg actggcactt ctccacgtcc ataaaaacat acccattgaa gcagatgaag      3480
     tgataacgcg ttttgggaga agacgtaaaa gaaaaattga ttttgtaatt taaatatatt      3540
     atcaaaatta aattataact tcttgtgact tgaccatgac tatgtgaccc ccccctggcg      3600
     ccaaacctgg atccgccctt g                                                3621
//
ID   hAT-4B_AP   repbase;    DNA;    INV; 3322 BP.
XX
AC   Contig44876;
XX
DT   01-AUG-2009 (Rel. 14.07, Created)
DT   01-AUG-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4B_AP.
XX
NM   hAT-4B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3322
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1366-1366 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           624..2606
FT                 /product="hAT-4B_AP_1p"
FT                 /translation="MSRKLRADEQIFLIGSPSTQILGSKLPSIGQVLSVFF
FT                 YNVRTVKLNTRESASLAVRECNIFWEKARIPVRAVQHCIDKLLNVYEEWRA
FT                 LQKNSQKVGDSFKLKETEFINKLNNLFDIAHANALNIMKIENDKQFLINQR
FT                 LPGRIGCLGGIDKKLLESENKAKKRKCIEIEKLTNRQLQLSNYNATEIQNQ
FT                 LSDMSISSPSSSSDSEYTNCTRIPMTLSEKKRGRTNFITPKLVAALDRCKL
FT                 SVRDSVYVIQATAEALGNNVDSLVINKSSIHRCRDAVRVERANKIKTNFQM
FT                 SVPSYITVHWDGKILPTLNVRESGIDRLPIVLTSNNLDLLIGIPKLEKSTG
FT                 KEQANAIYYALENWGVTDVVQALCCDTTASNTGRLNGACVLLEQKLERDLL
FT                 YLPCRHHIYEIILRGVFESVLPHTTTSPDIPLFKKFRNNWNKIDITNITSG
FT                 IDDLECCTALEDVRNDILHFCRAMLQNKCYRDDYKELLELSITFLNGDLDN
FT                 KFKIRPPGAMHQARWMSRAIYCLKIYIFRNQYSLSSSEKNSIRDICVFIVR
FT                 FYLKAWFSCTTAARAPANDLNFIKCLKQYENEHSKISKAAITKISNHLWYL
FT                 TEETAALAFFDDTLSNEIKRLMVQSLNNDGLIHPTKRLIVSFQDLGETFSG
FT                 ILYYRFCYVIT*"
XX
SQ   Sequence 3322 BP; 1210 A; 464 C; 518 G; 1130 T; 0 other;
     tagggtgtcc cttatttgac tataaaattt ttttttttgg atttttgttg gtctcaccca        60
     cttaatttgt gtatatacgt gtaaaaatga actacaaaaa gtttcaagtc aatatattaa       120
     ggttaacccg tgccgacttg aatttgaaat ttgagtatat taattcattc ataatttaat       180
     gatatatttt acatttttat atttaactca attacaataa ggaaaattaa aatttgttac       240
     ttaatatgtt ttaaatatta taaaattgtc tataaattac gttcttacat acttcttctt       300
     atttattata atttacaaga tatattgact tttgagtatg aaagtacttt tttctcaaaa       360
     ttatattatg aatttttata aataaatatt gcacacaatt aaagaaatca tcagattatt       420
     tgaacagtac aaacatcgtt atgttgaata ttatcgtatt ttttctagat aagaatgata       480
     cggattacga tccacaagtc taatagattt ttattaataa tatcgtgtag tcgacagtcg       540
     tgttcgttac ggtgcgtaat tagttgtgta cgtgtacgtc gtatgttgtt tcgtttttga       600
     ttttggtaat tgttttgcaa aatatgtcta gaaaattacg agctgatgaa caaatatttt       660
     tgattgggtc accatctacc caaatactag gctcaaaact cccgtcgatt ggacaagtgc       720
     tttcagtttt tttttataat gtgagaacag taaaacttaa tacgagagaa agtgcttcgt       780
     tagctgttcg tgaatgcaat attttttggg aaaaagctcg aattcctgtc cgagcagttc       840
     aacattgtat tgataaactt ttaaatgtgt acgaagaatg gcgtgctcta caaaaaaatt       900
     cacaaaaggt aggtgattca tttaaattaa aagaaacaga attcataaac aaacttaaca       960
     atttatttga tattgcacat gccaatgctt taaatataat gaaaattgaa aatgacaaac      1020
     agtttttaat taatcaaaga cttcctggtc gaattggttg tcttggtggt atagacaaaa      1080
     agttacttga aagtgaaaat aaagcaaaaa aacgtaaatg tattgaaata gaaaagctaa      1140
     caaatagaca acttcaatta tcaaattata atgcaactga aattcaaaat caattatctg      1200
     atatgtctat aagttcaccg tcgtcatcgt cagattctga atacacaaat tgcacccgta      1260
     taccaatgac actatcagaa aaaaaaaggg gccgcacaaa tttcattact ccaaagcttg      1320
     ttgctgcatt agatcgatgt aaattaagtg tacgggactc agtttatgtt attcaagcaa      1380
     cagctgaagc attgggtaac aatgttgata gtttggttat aaataaatcg tctatacatc      1440
     gatgtcgtga tgctgtacga gttgaacgcg ccaataaaat taaaactaat tttcaaatgt      1500
     ctgttcctag ttatataact gtacactggg atggaaaaat actaccgacg ttaaatgtta      1560
     gagagtcagg tattgataga ttaccaattg ttttaaccag taataatcta gatttgctta      1620
     ttggtatccc aaagttggaa aaatcaacgg gaaaagaaca agctaatgct atatattatg      1680
     cattagaaaa ttggggcgta acagatgttg ttcaagctct atgctgtgat accaccgctt      1740
     caaatacagg gcgtttaaat ggtgcatgcg ttttattgga gcaaaaattg gaaagagact      1800
     tactttacct accatgtcgc caccatatat acgaaataat tttacgtggc gtttttgaat      1860
     ctgttcttcc tcatacaacg acaagtcctg atattccact attcaaaaag tttcgaaaca      1920
     attggaataa aatagatatt acaaatataa cttctggtat agacgacctt gagtgttgca      1980
     ctgctttaga agatgtacga aatgatattc tccacttttg tcgagctatg ttgcaaaata      2040
     aatgttacag agatgactat aaagaattac ttgagctatc tataactttt ttgaatggtg      2100
     atttggacaa caaatttaaa atacgtccac ctggagcaat gcatcaagct cgctggatga      2160
     gtagagctat ttactgttta aaaatatata ttttccgaaa tcaatactca ttatcatctt      2220
     ctgaaaaaaa ttctattcgt gatatttgtg tttttattgt tcgattttat ttaaaagctt      2280
     ggttcagctg taccacagca gctagagcac cggcaaacga tttaaatttt ataaaatgtt      2340
     taaaacaata tgaaaatgaa cactctaaaa tttcaaaagc cgctataaca aaaattagta      2400
     atcatttatg gtacttaaca gaagagacag cagcattagc tttctttgat gacacattat      2460
     cgaacgaaat caaaagatta atggtacagt cacttaacaa tgatggactt atccatccaa      2520
     ctaaacgtct tattgtttca tttcaagatc ttggcgaaac tttttcaggt atattatact      2580
     atcgtttttg ttatgtaata acgtaattca taaggttatt aatagaattt ttttttttgt      2640
     agaaaaaaca ctggcctctt ttatatcaaa gaacagtatg caattttttt ctcgatttaa      2700
     tattaatacg gactttttga atgatgatcc aagcacatgg gacactcaaa ttagttattt      2760
     acacgggaaa gaaattgcat gctcgctaaa tgtagtaaat gatacagcgg aaagagcagt      2820
     taaacttatg gaagattttc acggaaactt aaccaaagat gataagaagt ctgagttgct      2880
     attacaatgt atacaagaac accgaagact atatcctgat tgtaaaaagg agacattgaa      2940
     aaaaaatttt aattaataaa aatgtataat aatattttaa gaaaatagta ctttcacact      3000
     cgaaaatcaa tatatcttgt aaattataat aaataagaag aagtatgtaa gaacgtaatt      3060
     tatagacaat tttattatat ttaaaacata ttaagtaaca aattttaatt ttccttattg      3120
     taattgagtt atatataaaa attttaaata tagcattaaa ttatgaatga attaatatac      3180
     tcaaatttca aattcaagtc ggcacgggtt aaccttaata tattgacttg aaaatttttg      3240
     tagttcattt ttacacgtat atacacaaat taagtgggtg agaccggcaa aaatgaaaaa      3300
     aaaaaattta agggacaccc ta                                               3322
//
ID   hAT-4C_AP   repbase;    DNA;    INV; 4014 BP.
XX
AC   Contig37637;
XX
DT   01-AUG-2009 (Rel. 14.07, Created)
DT   01-AUG-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4C_AP.
XX
NM   hAT-4C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4014
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1367-1367 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1383..3110
FT                 /product="hAT-4C_AP_1p"
FT                 /translation="RRYVKLYLFYNLFNIINNILIVLFFISVEFNSTSSSE
FT                 DVESITETESSRSPMPCPLQMKRARLEILTPRLSAVLDKCKISDRDAVHLL
FT                 TACVEATSLNPLDFVINRTSIRLSRQRFRELNAFRIKYNFFDLNLKFITIH
FT                 WDSKILLDITGKTKVDRLPIIATAPNTEQLLGVPELSAGTGYEVSSAVYDT
FT                 LEDWSLLDRVQAFVFDTTASNTGRLNGACVLLEHKLGRNILYLACRHHVFE
FT                 IILQSVFVGSKFAPSSGPDIPLFKRFKNQWETIDLTQFSIWSMDVKTSNVL
FT                 NDVSQQILIFAHKKLRDDFPRDDYKEFLELVVIFLGDVPPGGIKFRQPGPY
FT                 HLARWMAKGIYCLKIMLFQKQFKLSVGEKKALQTICCFIVKCYAESWFTAP
FT                 DAVQAPLNDFIFIKKLNSYKKDDKVIAEIALNKFVNHLWYLNEECAAFSLF
FT                 DDRINVNQKRNMVKKILEEDKEKEKEVQKKLYLKSEEVSNFVNNELPTSLL
FT                 SAKSMVMFKRFDLSTNFLKIDPSEWNSQNDYIQGQQTIRSLKVVNDTAERG
FT                 VKLMEEFNDKITKDEDQKQFLLKVSCLYK"
XX
SQ   Sequence 4014 BP; 1495 A; 525 C; 590 G; 1404 T; 0 other;
     tattagggtg gtccttatat ataggtgatg aaaaaaaaat taaagatttc ttttcaagca        60
     ccccccaatt ttgttcattg ctataagaaa ataatttagg ttaaatttgg tgatgataac       120
     tcaccccctt cacgtgccgc aaaagggttg aaaaatgact aacgagggta gtttttctgt       180
     ttttcgaatt taaaccaaaa actataagac ccacaaaaaa acacatagaa ccttaattat       240
     agaacattaa attatctatg aataatgatc ttatataatt tcttgtcaat cctttatttt       300
     ccgagaattt gttaaataac caaattttat gtatattttg aaaaattgat ttttctattg       360
     ttattctaat atattttacg tatggttcaa attacgacga agtcttttat acaaaaaatg       420
     ttaattagat aattataata tataagataa ttttctaaaa ataaagtcat aagtaaaatt       480
     tgcattagac caataacttt gtctttacag taggatttgt gaaatatttt attaaacaac       540
     tattttctac caccacgaag aaccaaatac aacataatta ttattttatt ttattgacaa       600
     gaaaaatatt actttataat aaagtttgat gaatcaaaca aattattgta tacctaaata       660
     tttattgtat aataatttcg gaaaactatt tttaagtttg agataagaca gcaaataata       720
     atatgtcctt ttggttatac acattactgt tattgagtat tagattagat tattatcgtg       780
     gttgattgtc gtataattga aaccataatg tcacattcac tgttcattcg tctttctgtt       840
     catatctata atatcatgcc tcgtcaaaaa atatttattg ttggtgttat gaaaaactaa       900
     atacttggta gtaaattacc atctaaaaaa gatgttttaa gtgttttatt ttttaatatg       960
     cggatggtaa aattaacgct acaagatagt atttcattgg ttattgatga atgtttaatc      1020
     ttttggaaaa aagcccgaat accaactcga gatcgatgtc attgcttaaa acaattgaaa      1080
     aaactctatg aagaattacg aaacctcgaa aaaagtaaaa ataggaatag tgagttatgt      1140
     aggcagagag agcatacttt cgaagacaat ttaaatgatt tatttgatat tgcgcatgca      1200
     tttgctatgg atatgataaa aataaatgaa gataaagaat ttttgaactt tcaacgacaa      1260
     aaaggccgtc ctgggtgtat gcttagtaca gatgtaaaat tagccggaat tgaaaaacga      1320
     aaacataatc gtgaaaaaaa atacattgat gtacaagaaa agtcgtgttc atcgaaatct      1380
     gaagaaggta tgttaaatta tatttatttt ataatttatt taatataatt aataatatac      1440
     ttattgtttt attttttatt tcagttgaat ttaattctac atctagttcg gaagatgtag      1500
     aatcaataac agagactgaa agttctagat ctccaatgcc gtgtccattg caaatgaaaa      1560
     gggcacgatt agaaatatta acacctcgac tttctgctgt acttgataaa tgtaagatca      1620
     gcgatagaga tgctgtacat ttattaacag cctgcgtgga agcaacttct ctaaatccat      1680
     tagattttgt cataaatcga acttcaattc gtctatctcg tcaacgtttt cgtgagttaa      1740
     atgcttttag aataaaatac aatttttttg atttaaattt aaaatttata actatacact      1800
     gggattcaaa aattcttctc gatataactg gtaaaacaaa agttgataga cttcccatca      1860
     ttgcaacagc tccaaatact gaacaacttc ttggtgttcc cgaactttct gctggaaccg      1920
     gttatgaagt ttcatctgct gtgtatgata ctcttgaaga ttggtcactt cttgatagag      1980
     tacaagcatt tgtatttgat acaacggcat ctaatactgg acgtttaaat ggtgcttgtg      2040
     ttcttttaga acataaactt gggcgtaata ttttatactt ggcttgtaga catcatgttt      2100
     ttgaaattat tctccaaagt gtatttgttg gatctaagtt tgctccatct tcaggccctg      2160
     atatcccatt atttaagaga tttaaaaatc aatgggaaac aattgattta acacagtttt      2220
     caatttggtc aatggatgtt aagaccagta atgttcttaa tgacgtaagt caacaaatat      2280
     taatatttgc ccataaaaaa cttagagacg attttcctcg ggacgattat aaagaattcc      2340
     tcgaattagt agtcatattt ttaggagatg ttcctccggg tggtatcaaa tttcggcagc      2400
     caggacccta tcatttggct agatggatgg caaaaggtat atattgccta aaaattatgt      2460
     tatttcagaa acaattcaaa ttaagtgtag gagaaaaaaa agccttacaa accatttgct      2520
     gttttattgt aaaatgttat gcagaatctt ggttcacagc tccagatgca gtacaagcac      2580
     cacttaatga ttttatattt ataaaaaaac ttaattctta taaaaaagac gataaagtta      2640
     ttgcagaaat agctttaaat aaatttgtaa accatttatg gtatcttaat gaagagtgcg      2700
     cagcgttcag tttatttgat gacagaatta atgtaaacca aaaacgtaac atggttaaaa      2760
     aaatattgga agaagacaaa gaaaaagaaa aagaagtaca aaagaaatta taccttaaat      2820
     cagaagaagt ttctaatttt gtaaataatg agctcccaac atcattactc tcagctaaat      2880
     cgatggtgat gtttaagaga tttgatttat ctactaactt cttaaaaatt gatccatctg      2940
     aatggaactc acaaaatgac tacatccaag gtcaacaaac aattaggtca cttaaggttg      3000
     taaatgatac agctgaacgt ggagtgaaac taatggaaga atttaatgat aaaattacaa      3060
     aagatgaaga ccaaaaacaa tttttattga aagttagttg tttatataag taataggtat      3120
     tagtagatat tcataataaa ttgtttctaa atataatatt aatatttgaa ttacatttta      3180
     aatgatttca gactgtacaa gattatcgtc gtaaataccc agggcatagc agagaacagt      3240
     tgaaaacgcc ctatgcctaa taattaaata attaatttag taatctcaaa tcataatata      3300
     ttaataatta taatatcaat aatctctcag tactcacctt agtaatattt tattattata      3360
     caataaatat ttaggtatac aataatttgt ttgattcatc aaactttatt ataaagtaat      3420
     atttttcttg tcaataaaat aaaataataa ttatgttgta tttggttctt cgtggtggta      3480
     gaaaatagtt gtttaataaa atatttcaca aatcctactg taaagacaaa gttattggtc      3540
     taatgcaaat tttacttatg actttatttt tagaaaatta tcttatatat tataattatc      3600
     taattaacat tttttgtata aaagacttcg tcgtaatttg aaccatacgt aaaatatatt      3660
     agaataacaa tagaaaaatc aatttttcaa aatatacata aaatttggtt atttaacaaa      3720
     ttctcggaaa ataaaggatt gacaagaaat tatataagat cattattcat agataattta      3780
     atgttctata attaaggttc tatgtgtttt tttgtgggtc ttatagtttt tggtttaaat      3840
     tcgaaaaaca gaaaaactac cctcgttagt catttttcaa cccttttgcg gcacgtgaag      3900
     ggggtgagtt atcatcacca aatttaacct aaattatttt cttatagcaa tgaacaaaat      3960
     tggggggtgc tcaataaaaa atttgaaagt ttaaaaataa ggaccaccct aata            4014
//
ID   hAT-4D_AP   repbase;    DNA;    INV; 3411 BP.
XX
AC   Contig1724;
XX
DT   01-AUG-2009 (Rel. 14.07, Created)
DT   01-AUG-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4D_AP.
XX
NM   hAT-4D_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3411
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1368-1368 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1225..2952
FT                 /product="hAT-4D_AP_1p"
FT                 /translation="FILGRTVDSEIICSTSSDSDSDTGENISNKSLDIGNT
FT                 SEFLDLHTFQSRGKKNFITPKLAIALDRCKISDRDAVHILTATVEAFGIHV
FT                 KDLILNRTSINRIRQRLRKDRADQLRKEFNTSEVGPVVVHWDGKLLPDLTG
FT                 KELVDRLPVIVSYKNSEKLLSVPNLISGTGQNQAEAVFQALEEWGLIDHVQ
FT                 ALCCDTTASNTGRLKGACIILEQLLERDILYFPCRHHIYEIILRSAFEVNF
FT                 VVTSGPDIQIFKRFQQFWPKVNINNYNTGLEDIIVSEKLNDITNVMLLFYM
FT                 DQLRKPHNRDDYRELLELAVIFLGGTPTRGISFKYPGAMHHARWMSKAIYS
FT                 LKIFIFRKQFKLKKNEEDSIRSICIFLIRLYIKAWFCAPIASLAPFQDLQF
FT                 LKSLVDYENIHKKISQSTLKKLCGHLWYLAPETVALAFFDTNLTIETKIKM
FT                 VDSIKLNNLTSEINKRIIVSPNEVTQIMKKEIYDFIYVESTSFFSRFGIST
FT                 SFLEQHPSMWDENVDFQKGLEIVNTFRVTNDTAERGVKLMEEYNKVLTKNE
FT                 EQKQYVLQVVEDYRRKYPNSLKTTVLNPF"
XX
SQ   Sequence 3411 BP; 1289 A; 478 C; 508 G; 1136 T; 0 other;
     cagtcttacc ccctaatttg gttccaatat atataaaaac tatgtgtaca aaatttcatg        60
     tcgataggtt aagtttaacc cgtgcccctg ggtccttaaa gttcgaaagc actattttat       120
     tcaaataacc acgttttttt ttaaatattt tatttatatc tcgtttcaac tcactcatat       180
     ataaatatgt gtaggacatt atttatagta aattaaattt tctataattc ttattctata       240
     tagttttttg attaacataa tatttttata tataattaac tatgaaacat acaagtttat       300
     aaaatgtata aaacgtaatt taataacgtg acaatttaac aagattacaa aatatctaac       360
     atcattatat tattacattt gtaactgaac gaatttatta tctgagataa gcaaacagca       420
     tttaataatt taataatttg atttgattat cttttaatct tttaatgatt cgaaacagtt       480
     ttaaaaatag actactccat aaaactgata gtaaatacta acatatttgt atgtaatctg       540
     acggtcgatt agtatactgc ggaccacgat agatagcaaa acaaaatatt acacatattt       600
     tttttatcat ggcttcaaca tctacttcaa atattattct tcgtgagcaa gataaaattt       660
     ttttaattgg tagtacttgc aaccaaatta ttggtagtaa attaccgtca aaaagacagg       720
     cgttacgtgt actttttttt aatatgcgta aagtaaaact caacttacac gaaagtgcga       780
     aacttgttat ccaagaaata gttgtatttt ggcaaaaagc tcgcattcca ataagacaag       840
     aatacaataa cattaaggag ctggaatcat tatacgaaga atggagaacc ttacaaaaac       900
     atgcaacaag aaaaactgaa ataaataaga aaaaacaaga atgttttgtg aatgagttag       960
     atgacctttt tgatattgca catatgaatg cattggatat tattaaaata gaagtagatc      1020
     gacaattctt actatctcaa agagaaaaag gcagaattgg ttgtatgctt ggtaaagata      1080
     aaaatttaca aaaaactgaa gaaagagtaa ttactcggtt agaagcagtt acaaaacgga      1140
     aaaagagagc ttatggagaa attgaacaag caagtaagac tgtaaatttc tatcaaacca      1200
     ttttaaatta ttctataaat ttaatttatt ttaggacgta ctgtcgacag tgaaataatt      1260
     tgttctacaa gttctgatag cgattctgat actggtgaaa atatttcaaa caaatcgtta      1320
     gatattggta acacatccga attcctagat cttcatacgt ttcaaagtag aggtaagaaa      1380
     aattttataa cgccgaaact tgcaatcgca ttggacaggt gtaaaataag tgatcgcgat      1440
     gcagttcata tattgacagc tactgtagaa gcgtttggta tacacgtaaa ggatttaatt      1500
     ttaaatcgga catctattaa ccgaatacgc cagcgcttac gtaaggatag agcagatcaa      1560
     cttcgaaaag aattcaatac atcagaagta ggtccagttg ttgttcattg ggatggtaag      1620
     ctactcccag atttaacagg taaagagctt gttgatcgat taccagttat tgtttcatat      1680
     aaaaattccg aaaaactgtt aagtgtacct aatctcatat ctggaactgg tcaaaatcaa      1740
     gcggaagcag tgtttcaagc acttgaagaa tggggcctta tcgatcatgt acaagctcta      1800
     tgttgcgata caacagcttc gaacacgggc cgtctaaaag gagcatgtat aatcctggaa      1860
     caattattag aacgtgatat tttatacttt ccttgcaggc atcacattta tgaaattata      1920
     cttagatcgg catttgaagt aaactttgtg gttacgtctg gtccagatat tcaaattttt      1980
     aaacgttttc aacaattttg gccaaaagtt aatatcaata attataatac tggattagaa      2040
     gatataattg tcagtgaaaa attaaatgat ataactaatg ttatgttatt attttacatg      2100
     gaccaattac gcaaacctca caacagagac gactacagag aattgttgga attagctgta      2160
     atatttcttg gtggtacccc tactcgtggt atatctttta agtatccagg tgcaatgcac      2220
     cacgcccgtt ggatgtctaa ggccatttat tctctaaaaa tatttatatt tcgtaagcaa      2280
     tttaaattaa aaaaaaatga agaagattca attcgttcaa tttgtatttt tcttattcga      2340
     ttgtatatta aggcatggtt ttgtgcacct attgcctctt tagctccatt tcaagactta      2400
     caatttttga aaagtctcgt cgattatgaa aatatacata aaaaaatttc tcaatcaaca      2460
     ttaaaaaaac tatgtggaca cttgtggtat ttagcacctg aaacagtagc attggcattt      2520
     tttgatacta atttaacaat tgaaacaaaa attaaaatgg tagattctat aaaactaaat      2580
     aatttaactt ctgaaattaa taaacgaatc attgtttcac caaatgaagt aactcaaatc      2640
     atgaagaaag aaatatatga ttttatttac gttgaatcta catcattttt ttcacgattt      2700
     ggaatatcaa catcattctt ggagcaacat ccatcaatgt gggatgaaaa tgtagacttt      2760
     caaaaaggtc ttgaaattgt aaatacattt cgtgttacaa atgatacggc agaaagaggg      2820
     gtaaagctca tggaggagta taataaggtc ttaacaaaaa atgaagagca aaaacaatac      2880
     gtgcttcaag ttgtcgaaga ttatcgccga aaatacccaa acagtttaaa aactacggtt      2940
     ttaaacccat tttaattatt tttctttgta tgctataaaa tataaatatt aaacaaatta      3000
     attcatccat caaaccaatg aggctctttt ttaataacaa ttaaatgtat attatatata      3060
     atacctacgt tttgtaataa tattgtttaa atgtcacatt atttataaac ttttatattt      3120
     cataattaat taataattat atataaaaat attatgttaa tcaaaaaact acgtataaca      3180
     agaattatag agaatttaat ttactataaa taatgtctta tacatattta tatatgagtg      3240
     agttgaaaca agatataaat aaaacattaa aaaaaaatta tatttatttg aataaaatag      3300
     tgctttcaaa ctttaaggac ccaggggcac gggttaaact taacctatcg acatgaaatt      3360
     ttgtacacat agtttttata tatattggaa ccaaattagg gggtaagact g               3411
//
ID   hAT-4_AP    repbase;    DNA;    INV; 3428 BP.
XX
AC   .
XX
DT   31-JUL-2009 (Rel. 14.07, Created)
DT   31-JUL-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_AP.
XX
NM   hAT-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3428
RA   Jurka J. and Baney O.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1369-1369 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 3428 BP; 1217 A; 470 C; 544 G; 1065 T; 132 other;
     cagtcttacc ccctaanttg gttccaatat atataaaaat tatgtgcgca aaatttcatg        60
     tcgataggtt aagtttaacc cgtgcccccg ggcccttaaa gttcgaaaac actattttat       120
     tcaattaacc acggtttttt tacgtanttc attgatatct cgttgtaact cattctatat       180
     aaaaatacgt gtangacttt atttatagta aattacattt tctaaaacta ttgtactata       240
     catttttttg attaacgtaa tatttattat atatagttga caatgaaaca taaaagtgta       300
     taaataacgt aacgatatta aacgaaatta taacgtatct aacatattac taaatatcta       360
     acgtcattat attnttacat tttgnaactg aactaattta ttatctgaga taagcaaaca       420
     gcactataac aatttaataa tttgatttga ttatctttta atcttttant gtttattcga       480
     agctgtttta aagatagacg acaccttaaa actgatagca aatgtttaaa catatttgta       540
     tctaatatga cggtcgatta gtacactgcg gaccgcgatc gatatccana caaaatattg       600
     cacatatttt tttcatcatg gcttcatcgt ctacttcaaa tattattctt cgtgagcaan       660
     ataaaatttt tttaattggt agtanttgca atcaaattat cggtagtaaa ttaccntcaa       720
     aaagacaggc gttacgtgta cttttttata atatgcgtga agtaaanctn aacttacacg       780
     aaagtgcgaa acttgttatc caagaaatag ttgtattttg gcaaaaagct cgcataccaa       840
     tangacaaga atacgataac attaagaagc tggaatcgtt gtacgaagaa tggagaantt       900
     tacaaaaaca tgcaacaaga aaaactgaaa taaataagaa aaaacaagaa tgttttgcga       960
     acgagttaga tgatctnttc gatattgcac acgcggatgc attggatatn attaaaatng      1020
     angaagacag acaattttta ctatctcaaa gagaaaaagg ccgaattggn tgtatgcttg      1080
     gtanagataa aaatttacgg aaaactgaag aaagagtagt cactcggtta gaagcagtta      1140
     caaaacggaa aaagagagct tatagagaaa ttgaactagc aagtaagact gtaaatttnt      1200
     atcgaaccat tttaaattat ttataaattt aatttatttt anaacgtatt tttgacagcg      1260
     aaataatttg ttctacgagt tccgatagcg attctgatac tgacgaaaat aattcgagcg      1320
     aatcgttnga tattgataac gcgtccgaat tcctagatct tcaaacgttt caaaanagag      1380
     gtaagaaaga ttttatgacg ccgaaacttg caatcgcatt ngacaaatgt aaaataagtg      1440
     atcgggatgc ggttcatata ttaacagcta ctgcngaagc nttnggtata gatgtaaatg      1500
     anttaattat aaatcggncg tcaattaaac gaatncgcga gcgtttacgt aaagatagag      1560
     cagatcaact tcgaaaagaa tttaatacat cagaagtagg tccagtcgtt gtncactggg      1620
     acggaaaact nctnccagat ttaacnggaa aagaanntgt ngatagncta ccagtnattg      1680
     tttcagctnn agatnnagaa caactnctng gtgttccnaa tcttatanct ggnactggag      1740
     aagancaagc tgatgcagtg tttcaaacac ttgaagantg gggtntnatc gataaagtnc      1800
     aagctttatg ttgtgataca acggcatcga acacgggtcg nttaaanggn gcntgtgtnt      1860
     tattagaaca antattagaa cgcgatattt tatacttgcc ntgccggcat catatatacg      1920
     aaatngtnct aagaagtgtt ttcgaagtaa aatttgcggn tacgtctggt ccagatgttc      1980
     cnatttttaa acgattccaa caancctgga nnaaaatnga tacnaaaaat tataanactg      2040
     gattagaaga tgtaattgtc agtgaaaaat taaatgacgt anctaatgtt atgttattat      2100
     tttntataga ccaattanga aaatctcaca acagagacga ttacaaagaa cttctggaat      2160
     tggccgtnat ttttctnggt ggnanncctc ctaacggtat atcttttnag tatccnggtg      2220
     cttttcacca cgccagatgg atggcnaaag cnatttattg tttaaaaata tatatatttc      2280
     gnaaacaatt taaattaana gaannagaag aaaacgcant tcgngatatt tgtatttttn      2340
     ttgttcgatt atatattaaa gcatggttta gtgcacctgc tgctaccgaa gcaccattac      2400
     aagacttacn ntttttaaaa aatctgtgat tatgaaaata tagataaaga natttctgaa      2460
     tcagctataa aaaaattntg tggacacttg tggtatctag cgccngaaac agtagcattg      2520
     gcattttttg atactaattt gacgatcgaa acgaaaatna aaatggtnga ttcataaaac      2580
     taaanaattt aacttccgaa attaataaac gaatcattnt ttcgccgaac gaagtaactc      2640
     aaattataaa aaaagaaata natgattttg tntacgtaga atctacgtca tttttttcac      2700
     gatttggaat atcaacatna ttcttagann nncacccggn nanttggaan gaaaatgaag      2760
     actntcaaaa aggnattgaa attntaaata catttcgtgt tataaacgat gcggcagaaa      2820
     gaggngtnaa gctgatggag gaatacaatg ananantnac gaaagacgaa gancaaaaac      2880
     aatntntnct acaagttgtc gacgactatc gcagaaaata ccccgaccgt aaaaaaaata      2940
     cgttttaaan ccgtttataa ttatagatat tttatttgta cgctataaaa tataaatttt      3000
     aaacaaatta attactccat cgaaccaatg aggctatttt ttaataacaa ttaaatgtat      3060
     attatntgta gtacttacgt gttgtaatca aatattgttt aaatacatat tatttataat      3120
     anttttatac gttttatact taattaacga ttatatntaa aaatataata cgttaatcaa      3180
     ataaantacg ggagtacaaa attattgtaa atanaatttc ctataantaa tgtctcgcac      3240
     attttatcgt atgaatttgt atttcaagat atgattggtt acatttaaaa aaaccgaaaa      3300
     tttttgtaat taactatttt tcaaacttta gagcttcggn ggcacgggtt aaatttaacc      3360
     gatccgtctg aaactttttt gtacgcttat tttttanaag attggaatag atttaggggg      3420
     taagactg                                                               3428
//
ID   hAT-4_DBp   repbase;    DNA;    INV; 2401 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2401
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 609-609 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Likely 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..2004
FT                 /product="hAT-4_DBp_1p"
FT                 /translation="MSHVWRPMSHLFIFYNIGTTKENIEGPSPKRKRETSC
FT                 VWQHFKKTEDKTKATCIHCGKTLKTAGNTTNLMDHLKRIHPNYSVLEIDGQ
FT                 SPSLDSFMQRNIEYPPESQKKKTMDKYVMLMIARDVQPFSMVEDDGFRNLM
FT                 QHMDPKYKMPSRTFFREVMLPKIYNDLRKDLECELEGVQYVAITTDGWTSR
FT                 ANEAYITVTCHFVNKKFQLITAVLSTASLLTPTNHSALNIADTIRQVLNEW
FT                 KLLHKVVTIVTDNDATMKKACEHLQIKHFPCFAHTINLLVQEILKLEIIRP
FT                 ILTKCKTVVAFMKRSSTAMAKFKDAQMVTAPLGLIQEVPTRWNSAFQMMER
FT                 ILQTNEALSIALLGTAKAPAPFSAEEIGVLEELCSLLRPFEKATKLISGGK
FT                 YPTMSLVIPIVCEMQIQVFSYKHSFKSPEAILAFNFLSDRYNDRFGHYETR
FT                 TVPRMATLIDPRFKKQGFQRTNNADQAYRALEDELHNVFKNLAQEPSTSAS
FT                 IAPTPPNPTSSYFTNLQLKIHKFKNNDYAFRRNYIAQATRRKRERARXLRS
FT                 LKFXDGKYRNYRSVL"
XX
SQ   Sequence 2401 BP; 790 A; 461 C; 453 G; 691 T; 6 other;
     tagaggtgca gaaacatcga tgtttttaaa ttctaaaaaa catcgattgt tttttttgac        60
     catcgatgtt ttgagaacca tcactatttc aaaaaattcg aagaagaaaa gcacgcttaa       120
     ggttcgtatt ttgtaacatt ttacttattt tgttaataat aatgtttaat tatttactta       180
     tacttataga aagtgatatt ggtggtgtag gcgcgacgct gattcagttt caacaatgga       240
     taagttcttg aaccgtaagt aaattaaaaa ctgcgcagta catggcgaac tacaagcaat       300
     gtagttgatt gcgtacatat gtcccacgtg tggcggccaa tgtctcatct gttcattttt       360
     tataatatag gtacaacgaa ggaaaatatt gaaggtccgt cgcctaaaag aaagcgagaa       420
     acatcatgtg tgtggcagca ctttaagaaa accgaggaca agactaaggc cacctgcatt       480
     cactgtggga aaacgttaaa aacggcagga aacacaacta acttaatgga ccacctcaaa       540
     cgtatacatc caaactatag tgttttagaa atagatggtc agtcaccaag tctagatagt       600
     ttcatgcaac gaaatataga gtatccgcca gagtcccaaa agaaaaaaac aatggacaaa       660
     tatgtaatgc tcatgatagc acgggacgtt caaccgtttt ccatggttga ggacgatgga       720
     ttccgtaatt taatgcagca catggaccct aaatataaaa tgccgagcag aacctttttc       780
     agagaagtaa tgctacctaa gatatacaac gatttaagaa aggatctgga atgtgagctc       840
     gaaggtgtcc agtacgttgc aattaccacg gatggatgga cttcccgtgc aaatgaagct       900
     tacataacgg ttacgtgcca ctttgtaaac aaaaagtttc agctaattac agcggtcttg       960
     tccacggcga gtcttttgac gcccacaaat cactcagcac tgaatatcgc tgacactatt      1020
     cggcaagtac taaatgagtg gaaacttcta cataaagttg taactatagt tacagataac      1080
     gacgctacaa tgaagaaggc atgcgaacat ttgcaaatta aacattttcc atgttttgcg      1140
     cacacgataa atttgctagt tcaagaaatt ctcaaattgg agattattcg gcccattctt      1200
     accaagtgca agactgttgt cgcatttatg aagcgaagtt cgactgccat ggcgaaattt      1260
     aaggacgctc aaatggtgac agcccccctt ggattaattc aagaggtacc aactaggtgg      1320
     aacagtgcct tccaaatgat ggaacgaatt ttgcagacta atgaggcact ctcaatcgca      1380
     ttgttaggaa ctgcaaaggc tccggcacct ttctctgccg aggaaattgg tgtcctggag      1440
     gaactttgtt cattgcttcg tccgttcgag aaagccacaa aattaatatc gggcgggaag      1500
     taccccacta tgtccctcgt aattccaatt gtctgcgaaa tgcaaataca agtgttttct      1560
     tataaacata gctttaaaag cccagaagcc attctggcat tcaacttttt aagtgatcgc      1620
     tataatgatc gttttgggca ctatgaaacg cgcaccgtcc ctaggatggc aacattaatt      1680
     gaccccaggt ttaaaaaaca gggcttccaa agaacgaata atgccgatca agcatatcga      1740
     gcattagaag acgagcttca caatgttttt aaaaatttgg ctcaagaacc atccacatca      1800
     gcgtcgatag cgcctacacc acccaatcca acttcgagct attttacgaa tcttcaactc      1860
     aaaatacata agttcaagaa caacgactac gcgttccgac gcaattatat tgctcaggca      1920
     acacgtagaa agcgggaacg agccagamac ttgcgatccc ttaaatttkt ggatggtaaa      1980
     tatagaaatt atagaagtgt attatgatta ttttaaaaca atattattmt aattctagct      2040
     gtgttcaaac aacatgcagc cctkcaagga gctaamaaaa aattctttgt attccagcca      2100
     ctcgtgtgaa tcagagagag cctttagcaa agcaggccaa ataatttcgg atcgccgtac      2160
     ccggttgaag tccgaagttg ttgaccagct aatgtttatc aataagaatt actatatctt      2220
     taataagtga cttatccgat ctctatggac tgaatttttg tttttatttt attaatttct      2280
     ctaaatatgt tacttgaata aatttgttat tttttttcgt ttaaatacaa attctataaa      2340
     gactttttaa ttatattttt taatataaaa ttatttttsa aaacaccgat gtttcatcga      2400
     t                                                                      2401
//
ID   hAT-4_DK    repbase;    DNA;    INV; 2279 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2279
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1226-1226 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2279 BP; 800 A; 410 C; 445 G; 623 T; 1 other;
     cttggcccca ccagagaact gcaagagtgg cattttttag cactctactc acacccaact        60
     aaattcgggt gccggtgcca ctcaccaccg agcatcaaag taacagacaa acacccacaa       120
     aaaaacatct gtgtgttgca agtactctgt gagctgagca cccgatcatt gcggtacttt       180
     tcgtcagcgg gtgccgatca cactcgcact caaagagggc atcagaaaaa caactatgca       240
     aaaagagttg caagaaaaaa acacatttat gacctgggtg tcgcgacgac acacatgaga       300
     aaaacaacta tgcaaaaagg attgtaagaa aaaaacgcat ttatgacctg ggtgtcgcgc       360
     tgacgccctt ttatgacccg ggtgtctaga caacacccgg gtgtttgtgt cgacacccgg       420
     gtgtttggga catgatcgcc tctttgtttt gaacacttgt tggcgatcgg attcattctt       480
     gtttggatag cttagaaaga ggtcgcaatt atggcagaaa cgtcaaatat tattaaaaat       540
     aaaataaatt gtggaacata ctcagttggt ccacaacata aaggaaaaag tgtcatatgg       600
     aacatcttgt gcgacatttt aaaagaagat gaaactgtgt tggacggatg gttgtactgc       660
     agtatatgcc tgaaagtgct caaatttatc caaaatcaga cgtctaattt atcccgccat       720
     aaatgttgtg tcaatttaag aagaccacaa gaactaaaac tggtttctga atgtgacaaa       780
     aaggaagcaa tagaaaaatg cacccaatgg gttgtgcaag actgccggcc gttttctgca       840
     gtaaccggag acggatttaa gaacatggtg cagttcttta ttaaaatcgg cgcagcctat       900
     ggggatagag tagacgtgga tgatttgcta cctgatccaa caactttaag tcggaaagcg       960
     caatcggatg cagaagataa acggactctt atttctactg aaataaagga agctgtggac      1020
     agtggaggag taacggcgac cgtcgacatg tggactgacc agtatgtcca aagaaatttt      1080
     ttgggtgtca ccttgcacta cgaaaaaaac tataagctgt gtgatatcat catgggactg      1140
     aagtcaatgg atttccaaaa atcgactgga gaaaacattt aaaaaaaatt aaatgtttgt      1200
     ttgcccaatt taatattgac aatattgata atgtgaagtt tgtaacagat agaggagcaa      1260
     acattaaaaa agcattagag aataacaccc gtctaaattg tagtagtcac ctatttgcaa      1320
     atgtgcttga aaaatcgttt gaagaggcca ttgagttgaa caaaattgtt aaaacttgca      1380
     aaaaaaattg ttaaatattt taaaaaggca aatttacagc acaaattgga aacaacatta      1440
     aaaagcgcat gcccgactcg atggaactca aactacaaaa tgctcaagtc aattttagat      1500
     aactgggtta ctattgatga agtattaagt gagactcaag tagcagaaat atatatggac      1560
     ttgaacaaat cgacattaaa agtaatggta gagctgctag aagattttga aagaattttt      1620
     aaagaactgc aaacatgtag ctcgccatct ttatgttttg tkttaccttc catttcaaaa      1680
     attctagaac tatgccagcc aaatatatta gacatttcat caatagcatt gctaaaagaa      1740
     aaaatcaata ataacattaa agatatttgg cagacgaatt tgagtatatg gcacaaagcg      1800
     gctttttttc tctatccgcc cgctgcacat ttgcaagaag atctttttga tattaagtat      1860
     ttctgaaatg ggaaatttag attcgtgctc aaccagaagc tcaagttttt caaaccaatc      1920
     taccaatatg tccaatccag aaagtcttac acattatcat tagttaatac cccaccaaca      1980
     gtgtctaaaa ccacattctt tttctcgaaa tcagttgctg cgtctgatgt aaattatatt      2040
     gaaacgccat tagaagaaat tgataaatat tgtagagaaa gagtcccatt aagtgaacat      2100
     tttgaaacaa ttgagtggtg gaaaaataat gaaatatgct gccgcgcgag tattttcctt      2160
     agcaggtaat attattacag aaaaacgaaa tagactatgt ccgaaatctt tagacagcct      2220
     gtttttctac attcgtttta caacaatttt aacagaacgg aataattatc ccttattat       2279
//
ID   hAT-4_DRh   repbase;    DNA;    INV; 2680 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2680
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1429-1429 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2680 BP; 861 A; 487 C; 504 G; 827 T; 1 other;
     agagatctgc aacgagtcaa acgttttggg gtacacccga tcattgactc gtatctggta        60
     tgattcaatc acttcgcttg atccaaaaag tatgagcggt gagcgaacgt tgtgagtgaa       120
     catttctgtt gcatcaaacg atcaaagctt atcaatgacc gtgtgtgatc gttctcaacc       180
     gcaggcatga tcgtttgtga gtgcaacatt tctcatacat gattgttgtg atcaaatatt       240
     tgggttcgct tgtgttcaga tggtttacat gagtggtttt ttcgtacggt acttttcgtc       300
     tgagatcggt ttgatcgact ttggctcgtg ccactttttg agttttgtgg cacgttgttt       360
     gactttttcg ccggcacgca taatttgtaa agttttaaaa aatggacatg aaagtgttgc       420
     tgagcaaatt acacatggca catacacact atctgccaaa cgtaaaggac gcagtttaat       480
     ttggaatgtc ttggcagaaa ttgtaaagcc agacaacacc atattgaccg gattcgtatt       540
     ctgccgcact tgctccaagg ttctaaagta caccgcaagc caaacatcta atttaaacag       600
     acatagctgc tgcaaattaa ctaagcagac atcaccttwa aaatgtgtct ccgctttgga       660
     caagtctgag gccatagaaa aatgtacatc gtggataacg gaagactgtc gaccatttac       720
     agctgtgcgt ggatctggct ttcttaagct agtacaattt ttcatcaaga tcggggccac       780
     ttatggtgaa cacatcgatt tggaagactt attaccggat cccactacaa tttctcgaaa       840
     ggttaaaaag tgcgccacag agaaaaaaca aaatattaaa gaggaaataa ttgacattgt       900
     aagcagcggt ggagcctcag ctacaatcga catgtggacc gacgactacg taaaaaggaa       960
     ttttctaggc gttacatttc attaccaaaa ggagtttaaa tttttcgata ttgttttggg      1020
     catgaaatca atggatttcc aaagatccac aggtgacaat gtcttgcgaa aacttaaaag      1080
     cctgttcatg gaatttaatg ttcaaagtat tgataatatt aagttcgatt aactgataga      1140
     ggctccaata tggtcaaagc tttggaacaa aatattcgcc taaactgtag cagccactta      1200
     ttctcaaatg tgttagacaa atctttttat ggcaccaaag agctaacagg tatcttagaa      1260
     tcgtgcaaaa aggtggttaa atattttaag aaagcgaatt tgcagcatct tttacctact      1320
     tcgttaaaaa gccaatgtcc gacaaggtgg aactcgcact atagaatgct taaattataa      1380
     tcgaaaattg gggtgaaatg aacagcgtct taaaaaataa tgatcacagc cagcttttgc      1440
     tgcctataga tataaacacc actacagctc tggttgaaat gtgtgagaat tttgaaatca      1500
     tttttaagaa acttaaaggt gtagatcctt gttaacattg atgaaatatg ggttcccaat      1560
     ttaagtttgt ggcacgaagc tgcatatttc ttattccacc agctttgaat atgcaaccag      1620
     atgacatcgc cgaaattaaa agattctgtg tttcgcgcat gatagacaat tcatatactg      1680
     cgttgcttac agaaactggg tcttcgtgtc aatccacacc ttcacttgct tcgacatcaa      1740
     atttttcttt tgatgctatc ggcagtgaga taactgattt aaattcgact atacaagctg      1800
     cagcacctga taaaaacaac gacgctttct tttttccaaa tttaataaaa caatcaaact      1860
     taaaaatcca agaaacgccc gaggacgaac ttgaaaagta ttgcaaggaa ttcgttgaaa      1920
     tagactacaa atttagttta attgaatggt ggcaaagtaa acaaaataaa taccccttgt      1980
     tgtcaaaact agcgatccag atacattcaa tgccagctag cagtgcggca gctgaacgat      2040
     ctttttcatt ggctggaaac attattacag aaaaacgaaa ccgattggag ccaggatcag      2100
     ttgacagttt gcttttccta aattcttatt ataaaaatta taatacttag tttagattta      2160
     agactacata tgtacatttg aaaacaagaa tatgaaatat ttctgttaat agtttttttt      2220
     ttttatatga attaattttt aatttttatt ttgtatacga aaaacgttat ttatttttta      2280
     atttaatttt gaatttgaac ctaatatgaa aaaataaaaa cttgttcatt taatcctcca      2340
     aatagttttc cttttcattt tatttgttga tcgcaatcaa ctcgagtatt ttagtcttac      2400
     tcacaatcaa ctcattcaca tcgtccacta aatcgaatcg atcacgatct gttcgagatg      2460
     attgcgagtt cggcaacgtt catttcatgg actcgaacac gaagcaaaaa tcagcatgtt      2520
     gatcgacccg aagcgcgacg atgagctaaa agaactcaaa ggcaaaatga tgcacgagca      2580
     tgattattct ccgaattttt atttcgggtg tgcatcactc acgatcacat ttctgcagaa      2640
     tgagttgagt tgaattgagc gaaatttggg cacgctgatc                            2680
//
ID   hAT-4_DTa   repbase;    DNA;    INV; 2708 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2708
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6245-6245 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(307..2082,2086..2298)
FT                 /product="hAT-4_DTa_1p"
FT                 /translation="MAANTNELWDFFEKHDGEDFAICKTCKKKLRTNKISN
FT                 LKAHLANIHKIIVNGRKKNQLETKDIGLKKPRAKKIDIKICKKQLIRSYIG
FT                 LVTDDSVPFNVLNSQNMRNILDPICEGLYAKDGKKLTLNACNAKKTLATVA
FT                 QNVRIDMKNEVRNRLLSLKIDCATRLCRNIFGISSQFISNGQIMSRILGMV
FT                 ELKGAGASTAKNLAAEVLKVLQKFDINLKQILSITSDNGANMIRATKLLSA
FT                 ITEEEDEDNCTNDEYLEKIKLMEKTPNMSVGNVVVCRCAAHTAQLCALDVT
FT                 KSPDVLKYLITCRNLTKYIRKNSNGYRDIFTLRSLKMPQLDCPTRWGSTYT
FT                 MIENLKEAKEVLIKIESIKNKNQNENFELDSYLWEFIESYYTVLSPLQKSI
FT                 MKFQEEQLHYGNFYAQWLKCRLLTAKIISDSKQILVSTIGGKILESITNRT
FT                 KTLMENKVLLSCLHLDPRFHSTLTGDQKLEAIEYLYTLWDRLNDVSPAGNI
FT                 HSESAQSEKLLNTTSVSMEDDLLDEYLAQGILSNTVSTNDIYSKIKNLQLP
FT                 PMRSDANVLSFWKEKQNTDPELYALSNVCFAVPPTQVKKIYIFLLIKLKYY
FT                 IFFSFSFFSQVTIERAFSTLKLVLTDNRNRLSEETLENILLVKLNPNFLDA
FT                 AIDTLPLFQNDEXE"
XX
SQ   Sequence 2708 BP; 973 A; 462 C; 462 G; 810 T; 1 other;
     cagtgtttaa aatctagcaa catgttttaa agattcggat tttgctttcg atttttgttt        60
     gtagattttt caagtcaaat caaaggcaac atattgcttt tgaaattttt caaactaaaa       120
     cagcagccag atttttgctt ttgaatttga taaagctgaa acagcagcca gatttttgct       180
     tttgaatttt tagctggctg aaacagcagc cgaacttacg acttttgtag atttttaaat       240
     ccaagcaaca gctgctttaa agttttaaat aaatttatct caaaaaaaca aaaaatcatt       300
     tctgatatgg ctgcgaacac aaatgagttg tgggattttt ttgaaaagca cgatggtgaa       360
     gattttgcta tctgcaaaac ttgcaaaaag aagctccgga ccaacaaaat aagcaatctt       420
     aaggctcatt tagccaatat tcataaaata atagttaatg gacgtaaaaa aaatcaattg       480
     gaaacaaaag atattgggct aaaaaaacct cgagctaaaa agattgacat taaaatctgc       540
     aagaaacaat taatacgttc ttatattgga cttgtaaccg atgacagcgt gccatttaat       600
     gtattaaatt cacaaaacat gagaaatatt ttggatccaa tctgtgaagg actttacgca       660
     aaagatggaa agaagctaac cctaaatgca tgcaatgcta aaaaaacatt ggcgaccgtt       720
     gcacaaaatg tgagaattga tatgaagaac gaggtaagga accggttact ctcattaaag       780
     atagactgtg caaccaggtt atgcagaaac atttttggca taagttctca atttatttca       840
     aatggtcaaa taatgtctcg tattttgggt atggtagagc tcaaaggtgc tggggcaagc       900
     acggccaaaa accttgctgc tgaagtccta aaagtcctcc aaaagtttga tatcaattta       960
     aaacaaatat tatcaattac atcggataac ggagctaaca tgatccgggc cacaaaactt      1020
     ttgtcggcta ttactgagga ggaggacgaa gataactgta ccaatgatga atacctcgaa      1080
     aaaattaagt taatggaaaa aactccaaat atgtcagtag gaaatgtagt cgtgtgtcgt      1140
     tgtgctgctc acacagctca actctgtgcc cttgatgtga cgaaatcacc agacgtatta      1200
     aaatatttaa taacctgccg taacttaacc aaatatataa gaaaaaattc taatggatat      1260
     cgagacattt ttacgcttag atcattgaaa atgccccagc tagattgccc aactaggtgg      1320
     ggatcaacgt atactatgat tgaaaatttg aaggaagcca aggaagtact aattaaaatc      1380
     gagtctatta aaaacaaaaa ccagaacgaa aactttgaat tagactccta tttgtgggag      1440
     ttcattgaaa gctattatac tgtgctgagc ccattgcaaa aaagcatcat gaaatttcaa      1500
     gaggagcagt tgcattatgg aaatttttat gctcaatggt taaaatgcag attattaact      1560
     gccaaaatta taagtgattc aaaacaaatt ttagtgtcta ccattggagg aaaaattttg      1620
     gagtctatta caaatcgaac aaaaactttg atggaaaaca aagtactatt atcatgtctt      1680
     caccttgatc cacggttcca ttcaacattg actggtgatc aaaaattgga ggccattgaa      1740
     tatttataca cactttggga cagacttaac gatgttagtc ctgctggcaa cattcattca      1800
     gaatctgctc aaagtgaaaa attattaaat accacttctg tcagcatgga agatgacttg      1860
     ttagatgagt atttggcaca aggaattcta agtaatacag tcagcaccaa cgacatatat      1920
     tccaaaatca aaaatcttca attgcctccc atgcgaagtg atgcaaatgt ccttagcttt      1980
     tggaaagaga aacaaaatac ggatccagaa ttatatgctc ttagtaatgt ctgctttgcg      2040
     gtacccccca cacaggtaaa aaaaatatat attttcctac tttaaataaa actaaagtac      2100
     tatatatttt tttccttttc ttttttttct caggttacta ttgaacgagc attttcgact      2160
     ttaaagttgg tccttaccga caacagaaat cgactgagtg aagaaacact ggaaaacata      2220
     ttgctagtca agttaaatcc aaatttttta gatgctgcaa tagatacttt gccgcttttt      2280
     caaaacgatg aatwtgaata aaaagggtta tgtctagcaa tccgtcgttt tttaaagcta      2340
     tttaaccata tttttctgta acaaaaacat ttaatgtaac attgaaatta agcaaatcta      2400
     atctataatc aacctgtcag aaacagacta tatgtgcctg atttcaaaat ctacaaaagc      2460
     agaaatttag ctgctgtctc agctagcttg aaatacataa acaaaaatcc ggctgctgtt      2520
     tcagctagct ggcaatccaa aaatccagca ttttgcctat tcgggctttg cttttactgt      2580
     tggctgtaag tttatcaaaa agccaaatct gaagtaaatt atttttgtaa ggctttcaaa      2640
     tagtcaaagc accccaaagc taaaatttaa cagattttgc tgcttatatc tcagcatttc      2700
     aaacactg                                                               2708
//
ID   hAT-4_LMi   repbase;    DNA;    INV; 2392 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2392
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3029-3029 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           519..2015
FT                 /product="hAT-4_LMi_1p"
FT                 /translation="MPKAKCSDSVKLRGFVREFGEKFFSTDGKILFCKLCE
FT                 VKVSAEKRFNVQQHCNTAKHSNCVKRSDENNSRQMLLFEQTGQSSTVQSFC
FT                 KDLCEMMVSCNIPLEKLKNPCFRRFLEKYTTHPVPDESTLRKNYLSVCYND
FT                 VLNKIRITVAEQKIWLSIDETTDVSGRYIANVVVGVLKVDGPGDIFLLTCE
FT                 ALDRVNNSTIAILFDNSLKLLWPDGVKRDNVLLLVTDAASYMAKAAKGLQI
FT                 LYPSMVYVTCLAHALHRVAEEVRSNYPDVDKLISCGKKIYIKAPLRVQKFK
FT                 EQAPSIPLPPKPVLTRWGSWLNAAEYYCTNYTQIKTIFCELDSDESSAIKT
FT                 VKDVFTDTLSGNLAYINANFSVISKAIKRLEAVGTQLCEALSIVQHVQSEL
FT                 DRARGHVADKVKNKLQSVLQRNPGYSTMCKISDSLSGNAATFEDSEAKLTC
FT                 SDLAAFKYAPVTSCEVERSFSRYKTILSDNRRSLTMENLKMHLVIQCNFAD
FT                 TED"
XX
SQ   Sequence 2392 BP; 776 A; 424 C; 493 G; 699 T; 0 other;
     cagggcccgg attttaatga caagtcatat tttttctgaa cttcagggtg aattttagaa        60
     caatttatac acaaatctag gcattttagt gtagaaaaaa tgtattttaa ttgtgcatat       120
     aaagtcatat ttcaacatat tttagtaata ggtcatattg cggctaactt ttattataac       180
     aggtcatatt tccgccaaat tttgccaaaa tgcatatact gtttctcttg tatctttcgg       240
     gatacaggaa taagaaaatg aatatgttgc tcatgagaca atatttaacg tgatattatg       300
     aaacataaac agataaatta ggtacagagc tttatttctc aggactgtag tagaaaagca       360
     gtgtagcaca acagtcgttt cacgaacata aaacactgtt gcgcagagtc gacaatacgc       420
     tctcagagcc aacaaaggcg gcttctgtcg taataataat cgcagtcgcg caggtgttca       480
     cagtaaccag tttgaataca gcctgtgcct tgttcatcat gcctaaagca aagtgctcag       540
     acagcgtgaa gttgcgagga tttgttcgag aatttggaga gaagttcttt agtactgatg       600
     ggaaaatact attttgtaaa ctgtgtgaag ttaaagttag tgcagaaaag cgctttaatg       660
     tgcaacaaca ctgtaatacc gccaaacaca gcaactgtgt gaaacgaagt gatgaaaata       720
     acagcagaca aatgttgtta tttgaacaga caggtcaatc ttcaaccgtg caatcattct       780
     gcaaggattt gtgtgagatg atggtgtcct gcaacatccc attggaaaag ctgaagaatc       840
     catgcttcag acggttcttg gagaagtaca caacacatcc agttccagat gaatctacac       900
     tgagaaagaa ctatttatcg gtatgctaca atgatgtgct caacaaaata cgaattactg       960
     ttgctgagca aaagatctgg ctgtcgatag atgaaactac ggatgttagt gggcggtata      1020
     ttgcaaatgt tgttgttggt gttctaaaag ttgatgggcc tggagatatt ttcctactaa      1080
     cgtgtgaagc tctcgataga gtaaacaatt cgacgattgc tattttgttt gacaactctc      1140
     tgaagctact gtggccggat ggtgtgaaaa gagacaacgt tctgctgctt gtaacagatg      1200
     ccgcttcata tatggctaaa gcagccaaag gacttcagat tctctacccc agtatggtgt      1260
     atgtcacttg ccttgcacat gcgttgcaca gagttgctga agaggtacga tcaaattacc      1320
     ctgacgtgga caaattaatt tcctgtggca agaaaatcta tatcaaagct ccgctacggg      1380
     tgcagaaatt caaggaacag gcaccttcaa tacccctccc acctaaacct gttcttacac      1440
     gatggggttc ttggcttaat gctgctgagt attactgcac caactacacc caaataaaga      1500
     caatcttctg tgagcttgat agcgatgaat caagtgctat caaaactgtg aaagacgtat      1560
     ttacagatac attgtctgga aacttggcat acatcaacgc caatttttca gtgatatcaa      1620
     aagccatcaa acgactggaa gctgttggca ctcagctatg tgaggccctg agtattgtgc      1680
     aacatgtgca gagtgagttg gatcgagccc gtggtcatgt ggctgacaaa gtgaaaaaca      1740
     aactgcaaag tgttctacaa cgaaatcctg gatattctac aatgtgtaaa attagtgaca      1800
     gtctttctgg gaatgccgca acatttgaag atagtgaagc aaagctgacc tgtagtgacc      1860
     tggctgcctt caaatacgct ccagtgacgt cttgtgaagt ggagaggagc ttttccaggt      1920
     acaaaactat cctcagcgac aaccgtagat ctttgacaat ggaaaacctg aaaatgcacc      1980
     ttgtgatcca gtgcaacttt gcagatactg aagattaaca gacggtatta aataatgtaa      2040
     agtgctttaa ataatttgtg tgcagaaata aaaatattgt tttactgttt cgatagatga      2100
     tctcctgttc actgtacttt gtgtttagaa aataaaagat tcagacgttt aaaaaatagg      2160
     tgctaattag cctcaaaccc tacagaaaga aagaactata cttacaatat tttgagaagg      2220
     gaattttgta ttattttatg gtaaataaaa aataaaataa agaaacaaga atgcttgaaa      2280
     taaacttcta ttaagtcata ttttactttt ttaaggtcat atttatataa gttttaggtc      2340
     ataaatgctt gcatatttca ctgtttttta ggtaattaaa atccgggcct tg              2392
//
ID   hAT-4_PBa   repbase;    DNA;    INV; 6675 BP.
XX
AC   .
XX
DT   21-MAY-2012 (Rel. 19.03, Created)
DT   21-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-6675
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 652-652 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3311..4303,4297..4683,4662..5552)
FT                 /product="hAT-4_PBa_1p"
FT                 /translation="MEMCDESIKKRKRSFIKAWLTDNRYQSWIREVSNNNS
FT                 QYHCSICNKNFSCSSLISRHADSACHKNNLKKGSSLPNNDEKSKKISQPVF
FT                 QQKWLDIEEFKCWLREVPNNANLSFCSICNKTITGGLAQIYRHAESKAHLD
FT                 KYKSFIEINKSNQNLQTEDNESLLSFDERKKLAEIRYAALIADKNISHQTA
FT                 KEILNFFQHIGKDPNILKSMSMGRTKCKNIITNVLCPIETERVVNKIQNTK
FT                 FSIFIDETSDICNTKWMTFMVRYVDPETLDVRSQLVKLINIDAKDSSAEKL
FT                 FQAFKCEMWKMKIPFLNIIALSCDNASVMIGKFSSFKKNKKLEEVCPHLLT
FT                 FTCPCHSAALIAHAACNKIPEFCEEFLRKTSSFINNSPKRLSVYNEFSECF
FT                 QETNHKLLKLCDTRWLSHYLCVERLLESWETIKYFLNEMVVSEKTQRGEHL
FT                 LSIMGNIETKAYFLFNKSLFSFLKYVLNFFNAFNAFFQASETRIHLLQPKS
FT                 LQFLFQICRNFLKDEYLKPFSVNTVFSLSENHKILHKINLGTECEEYLYEL
FT                 LMQGHEDAVTTVRTNCLMFYVTAAEEIRKRLPINNKFLLKLQVFRPFVSLF
FT                 NTDRETSFNDVSFIAKTIGSVDEDALKKEWIALPLDFTMEEKQNLSKLNFD
FT                 NMWKEILHPKHPNNITKYPNLTNVLNAVRSLPNSNADPERMFSSLSNLKTK
FT                 NRNRLSSASINATCVLKSGLRARGETCLNMMIEEKYLSLMSIQINYMLILL
FT                 KKNAVL"
XX
SQ   Sequence 6675 BP; 2395 A; 964 C; 987 G; 2323 T; 6 other;
     cagggatgcc atttcatgta cgattgcagc cacgctgcag cacgtagagg ggataggctg        60
     gcacacacac tagcgcgagc gctcgtccgt gtacgctccg cgcttcggcc agcttcgagc       120
     ggtagagaag gagtaccgac aactgctgtc ttcttctttc tcgagaaacg ctgtaccgct       180
     gatttgaagc tggcgtctca tgacatgaca cgaattaatc atgcgaggcg cgatgccatt       240
     gtcgattatt tttacacttt tatacattta ttttattaag ttaataacat tattacaata       300
     tatttttttc atacataaat aaaaattaaa atttgtaaat acaaaaatcc actctttgcc       360
     aatatatacg ctttttattt gcaaaaagta attattatat taaaaaaaat ttattgtggt       420
     cttataaaga tatttagata tagctattaa aaactgagcg tataaatata taataaatat       480
     ataaatatac atatatatat attatatata tatatttata tatatataac atatatatat       540
     ataatattgt tgctcgacgg aaatcgcgag aaggtggtgg tctcttccgt caggagggaa       600
     atgtaaaaaa ttatttattt aaattattaa taaaaaatag tttaaataat ttaattattg       660
     taatattaaa aattaatttt ttaatattgc aaaattgatt ttttacattt ccctgtgtgt       720
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt       780
     gtgtgtgtgt gttgtgtatt tatttttgcg attgatatat tctttttcat atcaactatt       840
     agttttacta ttatcaatta tatttattaa ataaatttaa taatattaat atattcttta       900
     taattgtgaa tatatatata ttcacaataa aaaaatataa aattaaatat tatatattaa       960
     atataattaa ttagaggaac ttgttgtgta aattgataat ccacgatagg ataaacaata      1020
     taggatgaat ctgtttataa atttatatat tgttgtttta aaattatatt attagattaa      1080
     taattaaaaa atttttggta ttaaatttga attcaaatca aaatgtagtt tggacagggt      1140
     ttaaaatgag ttacagttta gtagattatt cgaatattaa tttttaataa ttaattgagg      1200
     aagaatttaa ttaaatttag tataatttta ttaattgata atagatttat aatgtgtaca      1260
     aattgcccgt cattctcatt aatacatgag tgagagaagt cgtaacatag taaatatatt      1320
     ggaaaatgta tttagataaa atttcattaa aggaatttgt tggaataata ctgttaaatt      1380
     taagaaagac ttagttttaa ttctaaattt aaaaattaat tattttgagg ataatgtaaa      1440
     ttatttattg gtaaataaaa ttatatttgt ttgggaattg gttatagtaa taaatgaaga      1500
     aataattttt tgtaattata aagttaagta atgtaaatga aaaagtttta atgtaaggaa      1560
     gataatttta tttattttac cttttgtatc agggattaat aaattatgtt tttattattt      1620
     ataaaaatat tctcgaattt agaagagcta ggaagaatat gatagttaat gtaaaataat      1680
     tattattaat aactttttag agaagagatt ttagtcaatt ttaaagatat ctagttcttt      1740
     ttgaataaat ttaattttta tttggttgta tgaagtatgg gacgataaat tttaattgta      1800
     ttgtggaata aaataaattt taattaattt attttattaa gtttttatga ttttaatgaa      1860
     ttgtaagtta ttttgaatag taaattattt gtatttaaat attttttatt taaaatwata      1920
     ttttttataa ttatattttt ttcaatattt cttccccggc ctcttccttc tccatttcct      1980
     tccgggcctc tttctcctct ccggcccccc ctccaactat atctcataca tctcccccgt      2040
     tgcaaggcct tcttgcacgg gagcgcccac cactatttcg tctataaggc actgaaaata      2100
     attaaaatat taatatgttt acatatatat gtattataca tgacatatat gtgtgttatt      2160
     tatatacata waattattta aataaataat accactatct tgctgctgct gctgttgctg      2220
     ctgctgttgt tgctgctgct gctgcggttg ttgtttctgt ataaaaaaaa cttttgttga      2280
     aaaatctaaa aattacaaat taaccagata caggtctgga aataatttta ttggaccatc      2340
     aatattatta tgtaagacac ttaaatataa taataataat ttcacaaaaa tgtttctgat      2400
     ctagcaaccg atttaaatat aacagatttc acagataatc atttkaaaga tccaataaaa      2460
     ttatttacat atcagtatct gtccaaattt ttatatttgt cagcaaaagc gttctttttc      2520
     ttaccagcaa gtttacttgc tcccgcagct gttgcaattg cagctcatgt tgctctctta      2580
     attgctgcat ttgtagctca tgctgtttct gctgctgttg catcatatca gcaaactttt      2640
     tcttttgcta aaatacataa actatataat agtaacatta ttatactact gattatacta      2700
     ctgatatcag ataatgataa aattwtaata cacgcgtaca cacgtacacg caggcacacg      2760
     tacacgcagc acagcacacg caggcacacg cacatgcata cgataatgaa gcatattaaa      2820
     ttacattgaw aatgtgattt atatttctta aataataata aattgtaact aacctgtcat      2880
     cttgcgtcgt cgagttatgc tgctcgctgt gtcgccgaat aagaaagaaa caacgatctc      2940
     gattttccat tgtttatctc acgatgcgcg acgatttcat ttgtctttcg gtgacttcgt      3000
     gtaccgtctt tcgatcacat cgtgtatcgt gtatccccat cttaactttt taatattgaa      3060
     gaatatattc gagattaaaa ggtataactt tccatataca catttataca cacacgcacg      3120
     cacacacaca cacacacata tatattcaca tatacgtata cggagagaga cgatttagga      3180
     tcgcaaaata ttttgacaaa taacagaatc ctgatctctt tccgtgacac acgcatacat      3240
     ataattttca tattatattt ctatttctct ttttatcttt tttcgatttt tttgtccttt      3300
     tataattgat atggaaatgt gtgacgaatc aatcaaaaaa cgtaaacgaa gctttataaa      3360
     agcttggctt actgataata gatatcaatc atggatacgc gaagtatcaa ataataatag      3420
     tcagtatcat tgtagcattt gcaataagaa tttttcatgt agttcattaa tttctcgcca      3480
     tgcagattct gcatgtcata aaaataatct taaaaaagga tcatcattac ctaacaatga      3540
     tgaaaaatca aaaaaaatat ctcaaccagt ttttcaacag aaatggttag atatcgaaga      3600
     atttaaatgt tggttacgag aagtacctaa caatgcaaat ttatcttttt gttccatttg      3660
     caataaaact attactggtg gtttagcaca aatatatcgt cacgcagaat ccaaagcaca      3720
     tttagataaa tataaaagtt tcattgagat aaataaatca aatcaaaatt tgcaaacgga      3780
     agataatgaa tcacttttgt cgtttgatga gcgtaaaaag ttagcagaaa ttagatatgc      3840
     cgcattaatt gccgataaaa atatttctca tcaaactgca aaagagattc ttaatttttt      3900
     tcaacatata ggaaaagatc ctaatatatt aaaaagcatg agcatgggtc gtacaaaatg      3960
     taaaaatatt attacaaacg ttttatgccc aattgaaacg gaacgtgtcg ttaacaaaat      4020
     tcagaacaca aaattttcaa tatttattga cgaaacgtct gatatttgta atactaaatg      4080
     gatgactttt atggtacgat acgttgaccc ggagacatta gatgttcgtt cacaattagt      4140
     taaattaatt aatattgatg ccaaagattc cagcgcagaa aaattgtttc aagcatttaa      4200
     atgtgaaatg tggaaaatga aaataccatt tttaaatatt atagctctat catgcgacaa      4260
     tgcatctgtc atgataggaa aattttcatc atttaaaaaa aattagaaga agtatgtcca      4320
     catttattaa catttacatg cccttgccat tccgccgcat taatagcgca tgctgcatgt      4380
     aataaaatac cagaattttg cgaagaattt ttacgaaaaa cttctagttt tattaacaat      4440
     agccccaaac gattatctgt ttacaatgaa ttttctgagt gtttccaaga aacaaatcac      4500
     aaattgttaa aattatgtga tacacgctgg ctttctcatt acttatgtgt agaaagactt      4560
     ctggaatctt gggaaacaat taaatatttt ttgaacgaaa tggttgtaag tgaaaaaaca      4620
     caacgtggag aacatctgtt gtctataatg ggtaatattg aaacaaaagc ctattttctt      4680
     ttttaaaata cgttttaaat ttctttaacg cattcaatgc attttttcaa gcatcagaaa      4740
     cacgaattca tttattgcag ccaaaatctt tacagtttct ttttcaaatt tgccgaaact      4800
     ttttaaaaga tgaatattta aaaccttttt ctgtaaacac agttttctct ttatcagaga      4860
     atcacaaaat tcttcataaa attaatttag gtacagaatg cgaagaatat ctttacgaat      4920
     tactgatgca aggacacgaa gacgcagtta caactgttcg aacaaattgc ttgatgtttt      4980
     atgtaactgc tgcagaagaa attcgtaaaa gattaccgat aaataataaa tttttattaa      5040
     aattacaagt ttttagacct tttgtaagct tattcaatac tgatagagaa acttcattta      5100
     atgatgtttc ttttatagct aaaactatag gtagtgttga tgaagatgct ttaaagaaag      5160
     aatggattgc attgccatta gattttacaa tggaagagaa gcaaaatctt tccaaattaa      5220
     attttgataa tatgtggaag gaaattttac atccaaaaca tccaaataat attactaagt      5280
     atccaaattt aacaaatgtt ctgaatgctg ttcgatcact tccaaattca aatgccgacc      5340
     cagagagaat gttttcctct ttaagtaatt taaaaacaaa aaatcgaaat agattatcgt      5400
     cggcttccat taatgccacg tgcgttttaa aatcaggatt aagggcgaga ggagaaacat      5460
     gtttaaacat gatgattgaa gaaaagtatt tgtctcttat gtcaatacag ataaattata      5520
     tgctaatatt gctaaaaaaa aacgcagtac tttaaggcta catgccgtga atgacaatga      5580
     aattgctggt ccctcgtggg caggttaaaa atgttaaata ttagattatt agaatcttgt      5640
     ccatagcaga catcacgctt aaagagaata agcgtgtaaa aaatcttgtc catagcagac      5700
     atcacgctta aagagaataa gcgtgtaaaa aatcttgtcc atagcagaca tcacgcttaa      5760
     agagaataag cgtgtaaaaa atcttgtcca tagcagacat cacgcttaaa gagaataagc      5820
     gtgtaaaaaa tcttgtttgc gggagatatt atgagaaaaa aaagcgaatt tgtatcagta      5880
     atatgtatgc gtatagttat acataacaca cacacacaca cacacacaca cacacacaca      5940
     cacacacaca cacacacaca cacacacaca cacacacaca cacagggaaa tgtaaaaaat      6000
     caattttgca atattaaaaa attaattttt aatattacaa taattaaatt atttaaatta      6060
     ttttttatta ataatttaaa taaataattt tttacatttc cctcctgacg gaagagacca      6120
     ccaccttctc gcggtttccg tcgagcaaca atatatacgt tttatattta tagaaaataa      6180
     atacaataaa agtacaaaga atataatata caaacgctaa gtttttaata attatatcta      6240
     aatatcttta taagaccaca ataaattttt ttaatataat aattactttt tgcaaataaa      6300
     aagcgtatat attggcaaag agtggatttt tgtatttaca aattttaatt tttatttacg      6360
     tatgaaaaaa atatattgta ataatgttat taacttaata aaatawatgt ataaaagtat      6420
     gtaaaaataa tcgacaatgg catcgcgcct cgcatgatta attcgtgtca tgtcatgaga      6480
     cgccagcttc aaatcagcgg tacagcgttt ctcgagaaag aagaagacag cagttgtcgg      6540
     tactccttct ctaccgctcg aagttggccg aagcgcggag cgtacacgga cgagcgctcg      6600
     cgctagtgtg tgtgccagcc tatcccctct acgtgctgca gcgtggctgc aatcgtacat      6660
     gaaatggcat ccctg                                                       6675
//
ID   hAT-4_RPr   repbase;    DNA;    INV; 1787 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT-type DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1787
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3339-3339 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(285..788,734..1576)
FT                 /product="hAT-4_RPr_1p"
FT                 /translation="MRTLALICSQQLIEQLKIKKFALQIDETTLQSNEALL
FT                 MTYVRFFNDNQLCEEMLFAQKLKTDTKGETIFKVVKKYFIENNVPLKNIIA
FT                 CATDGAAAMVGKYRGFIAHLKSAIPEVFCIHCVLHRQHLVSKKLEDVCMCT
FT                 SYCNKISKLHKIKCTSRSPVSTTLKIFSVNQMHFKIACFNNFEDFQRLVMH
FT                 TEVRWLSKGNCLRRFVTLWDSIVSFLRDKSIGQEIIAVKCDIFYLSDIFEK
FT                 LNLLNKELQGRNSSLISSXESITAFLRKLXLFWHXVGRRVLIQFPSLATLN
FT                 AELKDDDIIVYVEHLKQLHNDMQYRFNDLIEMDVPNWLVDPFGVDAAEVDT
FT                 DIQETLIELQCDITAQAKYKSNKQNFWICNEIASKFPLLWEKANLFFTAFP
FT                 SSYLVESAFSRVVYLLSKERNRLDIEKRGDLRLSLTTMEPDIRKLASLHQA
FT                 QGSH"
XX
SQ   Sequence 1787 BP; 635 A; 266 C; 323 G; 560 T; 3 other;
     cagtgtttct caacgggggc catatggccc cccagtgggc cacagcgtat tttaaggggg        60
     ccacagaaaa aaaagtaaaa tcaggggggc cacggaaact tctgtagggg gccacaaaaa       120
     ttttcacgaa cagtatttta aatatttaaa aaataaataa aaaacaaacg tagcaattta       180
     aatagaaaaa aaaatgaata ttttcacgtc aatttgtaca tggggatata ttatggcgcg       240
     ccattactca cacacaaaac aaaattatag ctaatagtgc aagtatgcgc acattggcgc       300
     tgatctgctc ccaacaatta attgagcaat taaaaattaa aaaatttgct ttgcaaattg       360
     atgaaactac tttacagagc aatgaagctc ttttgatgac atatgttcga ttttttaatg       420
     ataatcaact ttgtgaggaa atgctttttg cccaaaaact caagacggat actaaaggcg       480
     aaacaatatt taaagtagtc aaaaaatatt ttatagaaaa taatgttcct ttaaaaaata       540
     ttattgcttg tgccacggat ggtgctgcag ctatggtggg taaatacaga ggatttattg       600
     ctcatttaaa aagtgctatt cctgaagtgt tttgtattca ctgcgtactt catcgccaac       660
     atttagtttc aaaaaaattg gaggacgttt gcatgtgcac tagctattgt aataaaatca       720
     gtaaactaca taaaatcaaa tgcacttcaa gatcgcctgt ttcaacaact ttgaagattt       780
     tcagcgttta gtaatgcata cagaagttag atggttatcg aaaggaaatt gcctgcgccg       840
     ttttgttaca ctttgggata gcattgtatc atttttacga gataaatcga ttggacaaga       900
     aattattgct gttaaatgtg atatatttta tctttcagat atattcgaaa aattaaattt       960
     attaaataag gagttgcaag gaagaaacag cagtcttatt tcttcgaawg aatctattac      1020
     tgcttttctt cgaaaactcm aactattttg gcacaawgtt ggacgacgtg ttctgataca      1080
     gtttccatca ttagctactc ttaatgcaga attgaaagat gatgacatta tagtatatgt      1140
     tgagcatttg aaacaactac ataatgatat gcaataccga tttaatgatt tgatagaaat      1200
     ggatgtgcca aactggttag tagatccatt tggagtagat gctgctgaag ttgatacaga      1260
     tatacaagaa acacttattg agctacaatg cgatattaca gctcaagcta aatataaatc      1320
     taataaacaa aatttctgga tttgtaatga aattgctagt aagtttccct tgctttggga      1380
     aaaagcaaat ttatttttta cagcatttcc cagttcttac ctggtagaat ctgcatttag      1440
     tagagtggtt tatttattat caaaagaacg aaatcgactt gatattgaaa aaaggggaga      1500
     ccttcgtctg tcactgacaa ctatggagcc agatataaga aaattggcca gtttacatca      1560
     ggcgcaagga tctcactaaa taaaacttct taatgagatc cttgagaaat tttatagaat      1620
     aagatataat tttttatact gcacattttt ttttctatat gtatattgta taaaacataa      1680
     taaaaaaatt ataaaataaa tgcatttttt tactagtggg aagggggcca cgcgtgcaaa      1740
     tatatttttt tggagggcca cgagtaaaaa aaggttgaga accactg                    1787
//
ID   hAT-5N1_DK  repbase;    DNA;    INV; 668 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-5_DK; hAT-5N1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-668
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1227-1227 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 24-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 668 BP; 215 A; 125 C; 114 G; 214 T; 0 other;
     tagacttctg catgagtgta ctcatttgta gcataacaga tctgtacagt agtgtagagt        60
     tcttaaaaat actgcaccca atcctttctg tacagtatac tctataggcc agaagtagat       120
     agcacaacat ttttagtgtg cccactttac gtgagtgcag tatatggttg tacccttcgg       180
     gagtgagtac tatatttgct gtacagcttg ttagttgtac agcttgttag ttgtatgtgt       240
     acaactgtgc agatgagttc agtattcttc aataagtgca taaaaatggt acataaaata       300
     atgtttctcc attctaatat taaaaattta aatataaatt ctttaataaa ataaaattct       360
     ttataagaaa tacatagtac acacgagaac tctatatgtg tgcatgtacc agtcatgaag       420
     tttcactcac tgtacaataa gtcaactgca caccaaaaca ctgtacagtg ccttgactac       480
     tgcacaccat ttttgctgta ctcataaaca gctgtacaac tatggaatga gtgagaacac       540
     tgtctgtcaa aacagacaat actaccctac tcactcacac ccaagtatac tgtgcagtaa       600
     aaagtgtgtt cccgtttcta gaataagtga ttcatttgtc gttttggatg cattcatgca       660
     gaagtcta                                                                668
//
ID   hAT-5N1_DRh repbase;    DNA;    INV; 469 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5N1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-469
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1430-1430 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. ~40-bp TIRs. Both termini are >97%
CC   identical to those of hAT-5_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 469 BP; 115 A; 118 C; 100 G; 135 T; 1 other;
     tagacattta cgccgccgag ccacgccgcc gccgccgccg atttttatct tttttaaggc        60
     gccgccgccg aatcgcgaaa atatcggcgc ggcggcggcg gcggcggcgt tcggcgcaat       120
     agcattttgt ttgatgcttt taagtaatcg aataaaagaa tcgawattgt ctcagctcca       180
     tctctcagaa aaagaagtgt taatttgttt ttaatttctt gaaatcttat gtttgtttaa       240
     ttatgttatt atgtttaata aggaaaataa ataaaagttg aagaaattaa ggaaactttt       300
     atttttaaaa aaattttgtt tttactgcgt acgccgccgg ccgccgacaa attcgacggc       360
     ttagctgccg ccgccgccgc cgttttcatt ttaactctac gccgccgccg ccggcttttc       420
     ttgaccccca cgccgccgcc gacgaccaag ccatcggcgt aaacctcta                   469
//
ID   hAT-5_AP    repbase;    DNA;    INV; 3133 BP.
XX
AC   Contig22772;
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   19-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_AP.
XX
NM   hAT-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3133
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1789-1789 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Aphids have very diverse TEs often present in young single copies
CC   or very small families. Therefore original sequences are often
CC   more representative than consensus sequences from this genome.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 3133 BP; 1157 A; 434 C; 494 G; 1048 T; 0 other;
     gggtggtcct tattttttga attcaaaaaa ttgttgacga gtaccccaaa ttttgttcta        60
     tgtattgcaa aaataattat gataaagttt gggcatgata agtctacccc ttcccgtgcc       120
     tcaaaggggt tgaagttttt ggtgatgata tatcggtaaa tctatttttg ctctccgata       180
     atataatatt tagactatta gctgtgtatt tttagaccac aaaaccacaa acacatttta       240
     tctttgacta taacacttat cgcattttta tctacatgcc atagccgtat atttcataat       300
     aaattgaata cgtgatagtg attaatagaa ataaaacagt aaaacataat attaaattac       360
     cattattagt taatctgtcg gtttgttcag acgttcagtg ttgttcacaa tagtgtcata       420
     agttagtgcg acttttctac acaaagtgtt acacatttgt tttttttttt agttttacgt       480
     ttgatttaaa aatgtcccgt caatatattt tccttttagg taatatttcc aatcaaatta       540
     ctggaaataa gttaccttcc aatggagatt gcctttgggt attattttat aacatgcgag       600
     ttgtaaattt aaatttgaat gacagttcgg gacttgttgc tgatgaatgc ttattgtttt       660
     ggaaaaaggc aagaatacct actcaatatc attgtgatat agttcgaaaa ataaaaaatt       720
     tgtatgaaag ttggcgaagt ttagataaaa ataaaacaag aaagtctgca acacaacagt       780
     gcaaagaaaa caattttaaa aactctttaa ataatttgtt cgatattgcc cacaaagatg       840
     ctttcaatat aattaaaatt gatgaagaca ggcagtttct aactttacaa agacaagaag       900
     gtcgtgtcgg gtatatggca ggtgtggaca aaaaattatg tgcagttgaa gaacgaaaat       960
     gtgaacgaga gcaaaggaga gaattgttca agcaaacatc catgatgcga cctggtaaat      1020
     taatttttat attaaaaaaa taaataattt atctgattat aataacatta atttacataa      1080
     tatacaatat aaaattgact atatctatta ttttatttgt aatattattt ttttcttagg      1140
     cccatctcac actgttgatt ttgaggagag tatatcaagc gatgatgaac gtgatgtgct      1200
     taaatctaaa gattccgaaa tgtgtgaaag tattataatg ccaattaaaa ataaacgagg      1260
     taggaaagaa attatgacta gtcgtttagc atcagcttta gacaaatgta aggttagtga      1320
     cagggatgca gttcacttat taatagcatg tgccgaggta tttaatgtaa atgtaaatga      1380
     ctatgcaata aatcgctctt cagttaaaag aagtcgtgaa agttttcgtt accaaatatc      1440
     ttccgaaatt aaaacagaat ttcatcaatt aaatcttaat tttgcagttg tccactggga      1500
     ctcaaaaata cttcctaatt tgattggaac cgaaaatgta gacagattac cagttattat      1560
     aacagcacca aacgtagaac aacttcttgg ggtaccacat ttgtcatctg gtactggaaa      1620
     ggaaatttct tctgcagtgt atgacacatt aaaagattgg agtatgttgg aaaaagtgca      1680
     agcgtttgtt tttgatacaa cagcatccaa cagcggtaga ttaaatggat catgtgtgct      1740
     attagaacaa atgttaaacc gaccaatact gtttttggct tgtcggcatc acatatttga      1800
     aattattttg caatcagttt tctcatactc aaaacttaca acaatgtctg gtcccgaaat      1860
     tcctattttt aaacgtttta aaaataactg gaatcaaata gatcaaacga aatacaacac      1920
     ttgggtaagt gataatgagg tcaaaaaaat attgcataaa gtagccgatg atgttataat      1980
     attttgtaaa gatactttaa accaaaatct accaagggat gattacaaag aatttttgga      2040
     attggtgata atttttttgg gtggggtacc acctaaaagt attcatttta aacgtccagg      2100
     agcttatcat ctagctagat ggatgtgtaa gggaatatat tgtttgaaaa tatacatatt      2160
     tcaagaacaa tttaaactga caaaagcaga aataacttca ttaaaaacta tatgctgttt      2220
     tattgtgaaa tgctatatag agttttggtt taggtctcct aatgctattg aagcacctta      2280
     taatgatgta ctttttttaa gaaaacttga agactataag tccgatgata agaaagtggc      2340
     tgagcttgct ataaaaaaat ttataaatca tttatggtat ctgggagaag aaaccgcttg      2400
     tttttcgtta tttgatgaca ggattgaaaa tcacgtgaaa aaacaaatgg ctcaacaatt      2460
     attagaaaat gacgaccttc aagaagacga attgaccaca gaaatacaaa aaaaatatgt      2520
     attaaaaaat ggtgatgtct cacaattttt aaaacaagac ttaccacttg aattaataca      2580
     caataataca atacataaat aatcattata ttatatatta tttttttttt taatttacag      2640
     gaaactttca acctcacaac atatttgtaa gaaactttta tttagtaaat aaatattata      2700
     tatagcaaca attatagtac ttcatgtttt gtgcgtaaca ttaatattta agagattaga      2760
     ggtcaaaaac taaaaactta taaaatttcc taaaatatta attatgacca gttttttttt      2820
     aaatttacgg gattccatca acttaacaac atatttataa gaaactttta tatagtaaat      2880
     actaaatata tatagctaca gtaatagtac tttaagtttt ttgcgtaata tcaatattta      2940
     agagagtaca cgtaaaaaat ggaaattcat ccccaattag taaaacttca acccctttga      3000
     ggcacgggaa gaggtagact tatcatgccc aaactttatc ataattattt tttcaataca      3060
     tagaacaaaa tttggggtac tcgtcatcaa atttccaaaa aaaaaaattg acctctataa      3120
     ctaaggacca ccc                                                         3133
//
ID   hAT-5_DBp   repbase;    DNA;    INV; 1322 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1322
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 610-610 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..958
FT                 /product="hAT-5_DBp_1p"
FT                 /translation="MESPKKVTSIVTDNDASMKKACDLMQIKNFPCFAHTI
FT                 NLLIQDTLKLPMLTQVLQKCKRIVNYFKSSTIAYEKFKKAQGETPYSLIQE
FT                 VPTRWNSALYMMQRILFTNTHISTVLLGIPKAPQPLGAEEVLMLEDFIKIL
FT                 EPFEYATKSTSHEKVVTISIVIPLICELNKKIADMKHKIITNEGKTTFQYI
FT                 KNRMSERLSQYETRTVARLATILDPRFKKLGFLSQTHADEAAKALEIELYN
FT                 KMSKLTHDAPTXPTLQPENRQFTFLQKKVAEKTRSARADSIIALRQFLEVF
FT                 NSPEDCNPLTFXKVF"
XX
SQ   Sequence 1322 BP; 467 A; 276 C; 224 G; 349 T; 6 other;
     tcactatakc ggattcactw aatctaatac taactgaatg gaatctccta aaaaagttac        60
     atcaatagta acggacaatg acgccagcat gaaaaaggca tgtgatttga tgcagattaa       120
     aaactttcca tgttttgcgc acaccataaa tttattgatt caagacactt taaaacttcc       180
     aatgctgact caagtgttac aaaaatgcaa acggatcgtg aactacttta aaagcagcac       240
     aatcgcgtac gaaaaattta agaaggcgca aggtgaaacc ccatacagtt tgattcagga       300
     ggtgcccacc cgttggaact ctgctctata tatgatgcag cgcattttat ttactaatac       360
     mcacatatcg acagtscttt taggtattcc aaaggcccca caaccattag gagcggagga       420
     agtccttatg ctggaagact tcattaaaat attggagcca tttgagtatg caacgaagtc       480
     gacttcgcat gaaaaggtgg tgaccatatc aatagtcatc cccttgatat gtgagctcaa       540
     caaaaaaatt gctgacatga aacataaaat aataacaaat gaaggaaaaa caacgtttca       600
     atatattaag aaccgtatgt cagaacgctt gagccaatac gaaacaagga cagtggctag       660
     acttgcaacc attttagatc caagatttaa aaaactcggc tttctttccc aaacacatgc       720
     ggacgaagca gctaaggccc tcgaaattga actgtacaat aaaatgtcca aattaaccca       780
     cgatgcgcca acamcaccaa ctctacagcc ggagaaccgg cagtttacct ttttgcaaaa       840
     aaaagttgct gaaaaaacga ggtctgccag ggcagactct attatagccc tgcgacaatt       900
     cttagaggtt ttcaactctc cggaggattg caacccatta acttttwata aggtatttta       960
     aatttaaact ctagatattt tatataaaat ccaatattta ttttatagat gagccctgac      1020
     gaaatggaac ctttcaaagc tactgcaaag cagtcccctc tgcgtgccag ccacttcaac      1080
     tgcatccgag agagcgttca gcaaagccgg acaaataatt agtgaccgca gaagctgtct      1140
     aaaaccacaa actgtagata aacttttatt tttaaacaaa aatgcagatg atctcctgta      1200
     aataaatgtt gaaattaaaa aaaaatattt tttttacttc gataatcgat tataatcgat      1260
     gttttccttc tcaaacatcg aaaacatcga tgtcaccgaa catcgatgtt tttccagctc      1320
     ta                                                                     1322
//
ID   hAT-5_DK    repbase;    DNA;    INV; 1512 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1512
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1228-1228 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..1195
FT                 /product="hAT-5_DK_1p"
FT                 /note="transposase."
FT                 /translation="MYIYYQXFLGNEIKNKIXRILRDFGCDLLMDDPIIVT
FT                 DRGSNMKAAFNGLSTIHCANHLIHNVIGKVVXEVPELLDLVXRCSKYFKKS
FT                 GQNLNLTSTLKSYCPTRWNTIFYLLKSVELNWMEISQILVEKNELARITDI
FT                 NLINISGMVNLLAPFECCSKKLEGSNYPTLHLTVPHINNLKKISSANENDI
FT                 EIVKKSKLALLQYLDSIVTQNLKKYHNISLFLFPPTNKLTKFSELEKEQTF
FT                 KDVEEMMISIHINSQNDDIEKLIKPTQDLDNIFADYSQPVESTNIFTYIEN
FT                 ELQTYKNINKAYSEDFDVLQWWSINKDRFPLLYKVSCKLLSAPASSAASER
FT                 AFSVAKNLICEKRSKIATTEDMVHKIMFLHSNINNLNVNSLIK"
XX
SQ   Sequence 1512 BP; 568 A; 252 C; 237 G; 447 T; 8 other;
     aagaaktata aaatgttwtt sgaatatata ataaaatatg tacatatatt atcaaamatt        60
     tttaggtaat gaaataaaaa acaaaataga scgaatctta cgtgactttg gatgtgattt       120
     actgatggac gatccaataa ttgttaccga ccgaggatct aatatgaaag cagcattcaa       180
     cggactgagc acaatacact gtgcaaatca cttgatccac aatgttattg gcaaagttgt       240
     gaawgaagta ccagaattgc tggatttggt tmatcgctgc agcaagtatt ttaaaaaatc       300
     tggacaaaac ttgaacttaa caagcaccct aaaaagctac tgtccaactc gttggaacac       360
     catattttac cttttgaagt cggttgagct aaattggatg gaaatttcgc agattttagt       420
     ggagaaaaat gaactagcaa gaattacaga cataaattta attaatatta gcggaatggt       480
     gaaccttctt gcaccttttg aatgttgctc caaaaagctg gagggtagta attatccaac       540
     attgcacttg actgttccac atataaataa cttaaaaaaa atatcatcag caaatgaaaa       600
     tgacattgaa atagttaaaa aatctaaact tgcgctttta cagtacttag attcaatagt       660
     tacacaaaat ttgaaaaaat atcacaacat ttccctgttt ttgtttccac ccactaataa       720
     attaactaaa ttctcagaat tagaaaagga acaaactttt aaagacgtcg aagaaatgat       780
     gattagtatt catataaata gccaaaatga tgatatagaa aaattaatta aacctacaca       840
     agacttagat aacatatttg cagattattc gcaacctgtt gagagcacaa atatttttac       900
     atatattgag aacgaacttc aaacatataa aaatataaat aaagcgtata gtgaagattt       960
     tgatgttctg cagtggtggt caattaataa agaccgtttt cctctactgt ataaagttag      1020
     ttgcaagtta ctatcagctc ccgcgagcag tgcagcatcg gaaagggcat tttctgttgc      1080
     caaaaattta atctgcgaaa aacgttcaaa aattgccacc actgaagaca tggtacataa      1140
     aataatgttt ctccattcga atattaataa tttaaatgta aattctttaa taaaataaaa      1200
     ttctttataa gaaatacata gtacacacga gaactctata tgtgtgcatg taccagtcat      1260
     gaagtttcac tcactgtaca ataagtcaac tgcacaccaa aacactgtac agtgccttga      1320
     ctactgcaca ccatttttgc tgtactcata aacagctgta caactatgga atgagtgaga      1380
     acactgtctg tcaaaacaga saatactacc ctactcactc acacccaagt atactgtgca      1440
     gtaaaaagtg tgttcccgtt tctagaataa gtgattcatt tgtcgttttg gatgcattca      1500
     tgcagaagtc ta                                                          1512
//
ID   hAT-5_DRh   repbase;    DNA;    INV; 2022 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2022
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1431-1431 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. ~40-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2022 BP; 643 A; 397 C; 391 G; 590 T; 1 other;
     tagacattta cgccgccgag ccacgccgcc gccgccgccg atttttgtct tttttaaggc        60
     gccgccgccg aatcacgaaa atatcggcgc ggcggcggcg gcggcggcgt tcggcgcaat       120
     agcattttgt ttgatgcttt taagtaatcg aataaaagaa tcgatattgt ctcagctcca       180
     tctcgtaatt ctcatctcta agtattatct ctagagcatt tcacagctgt tgtcctcgtg       240
     tgtttgtttt gaattgtgcg tccatttcgc gatttcataa agtaagtttt aaattatatt       300
     attcgtaata catatatgta tatgtatgta ttctatattt taaaaacaaa tagatggata       360
     aggcactgag catgtattca atcaaacttc agcgaagcac agctcgtaaa agcaamgtgt       420
     gggatttctt tggcaccttg gttttttgta agctgtgttt ggaagaacag aaaaaagtcg       480
     acgaaactac aatattttac atggtaaaac atatttttta cttaattaaa atccaaataa       540
     gatgtaaatt gtttcagtgc taaagtacag tcatattcaa agagctgttc gacaggaaat       600
     ttaagtcgtc acctcaaaaa tgatcacaat ttacgcgata tcgattctcc gggtacttca       660
     ttggctgcac gaggggcatt accaaacttc tttaataaca ccatgccaat taaatctcca       720
     agagatagaa aatgggcgct gggacgtgat ttagctttgt ggatggctag agatctgctg       780
     ccatttcata caataagcca taatggcatt aaagacttct taacaaaata taaagttgtg       840
     gtatctgcag atgacattcc acacttcaaa actttgtcaa caacagcttt agacgatgta       900
     tatgaatgca ttttaaaaga agcaataagg atggtatcag gacaaaagca cttcgcctta       960
     acattcgatt tgtggaccga taactataga agaagaagtt atatcacatt tacatttcac      1020
     ttcttgtcga cgaattttga gatgaagcat ataacgctag aaacaaaata cgtggcaaaa      1080
     tctcatacgg caagtaatat tctaacagag ctcgaagagg taactgaaat gtatcatttg      1140
     gaaatgggat caaattttgt ggtaaccgac caaggaagca atgtcaaaaa agctattaat      1200
     ttgggctgta taaacaacca cttctgcctt ggacatggtc ttcacaattt gcttaatata      1260
     gatggttaca attccgtgtc ggatattaag aatttagttg tgaagtgcaa aaatattgtg      1320
     agtgctttac gatttaaaac acatgtatta agatgccaag ctgacgctct ttaaaatgag      1380
     gttttgtcaa gcatcgacaa tttggaagaa ctcctcggag tttttgttaa aaatgtataa      1440
     ggagctactt ggcgatccac aacaagatat tgatcagcag gatagttcca gagatggttc      1500
     atcagcatgc aaaattttaa agctagctca acgacactcc aaaaatacaa aaaacagcaa      1560
     tttggaagct gaatgccacc tacttttaag tttgtcctca tcccaagacg ttttaacatt      1620
     ttggaatgaa aaggcacctg caatgccatt gttatcgaag ctggcacaga aggtgttgtg      1680
     tattccggca acgagcacac ctagtgagcg agttttttcg attgctggtc ttaccgtttc      1740
     tcaaaaacga tctcagctca gtcctcataa tgtaaataaa attatattta tacatgataa      1800
     ttacgaaaca tgcaaagttt aaaaaaaata aaagtttaag aaattaagga aacttttatt      1860
     taaaaaaaaa ttttttactg cgtacgccgc cggccgccga caaattcgac ggcttagctg      1920
     ccgccgccgc cgccgtttcc attttaactc tacgccgccg ccgccggctt ttcttgaccc      1980
     ccacgccgcc gccgacgacc aagccatcgg cgtaaacctc ta                         2022
//
ID   hAT-5_DTa   repbase;    DNA;    INV; 2662 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2662
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6215-6215 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(200..310,484..1135,1192..2288)
FT                 /product="hAT-5_DTa_1p"
FT                 /translation="MFRNIKVGKGATVYNIVEQFSLSVLGLKMENIDPADV
FT                 LPNSVQIKLSSGEYQISEKRGRSKVWSVFGKVVDKQNRDVPGFVACRTCPS
FT                 VMKFFGNTSNLVRHKCYKEKSSPSSSALGETVLDASTKAEITLALTKWSVK
FT                 NCRPFQIVADEGLLDLADVLVRIGARLGSSVDIKKSLPHPTTISRNIRELY
FT                 QKEVSQVKQELAQVRSFGFSITSDVWTDMFLKRSYLSVTIHYILEDKLFNR
FT                 LLTMTSMNGESCTGAKIRSKVEDCLNEFSLDMRKAVVVTDRGSNMISAFKN
FT                 YDHINCVNHLLNNVIEKTFKDIPELELMLSTSSKIVKYFKKSGENINLNSS
FT                 LKSICPTRWNTIYYTLKSIESNFNDITAILLRKNELSRMRDLNSRDLSSVT
FT                 EVLGHFENSSKTLEGEKYPTLHLVIPHIGKLNKICCDNSINTLVAKKLKES
FT                 LENGIKNVVLKHISKFHNLAHFLFPPTNQLLQFTQEEKMETIALCKELMTA
FT                 TNENMDEENLNEIGDEHIFSDYITKSACGDIQEKSEKEVQRYLNLQVKYSD
FT                 DFDVLAWWKNNENYVPSLYKLSRKIFSIPSSSAASERVFSRARNLLSEKRS
FT                 AIGSNPTLVDEIMFLNSNYKFN"
XX
SQ   Sequence 2662 BP; 903 A; 483 C; 480 G; 796 T; 0 other;
     tagagccctg catgaatcaa cagtatgttt cgttcacagt attaccgtag taggctagga        60
     tactgttact actgtgcttc ccagtttcga gatatgaatc atccgaaacc tatgtttcaa       120
     atgattcgga tcatatgaac acacaacaaa aatttttgcc aacagtgtgg attcgagact       180
     atgtttcaaa cgtttcgaga tgtttcgaaa catcaaagta ggcaaagggg ctactgtgta       240
     taatattgta gagcaattca gtttgtctgt gctggggcta aaaatggaga atattgatcc       300
     tgcagatgtt gtaagttaaa attctaagta gcatcagaaa tcgcgcagct ctgaattggt       360
     gttgcaatct tatgtgcatc aatataaatt tacgccacct caccgctgcg cgatttctgt       420
     ggctccccag actatatatc tatcatgtag aaatatacct aatccttttt ttttaaatat       480
     tagttaccca attctgtgca aataaagctt agttccgggg agtatcaaat tagcgaaaaa       540
     cgaggaagaa gcaaagtttg gtctgtgttc ggcaaagttg tcgacaagca aaacagagat       600
     gttccaggtt tcgtcgcttg tagaacgtgt cccagcgtga tgaagttctt tgggaacaca       660
     tcaaaccttg tgaggcacaa gtgctataag gagaaatctt cgccgtcatc tagtgctttg       720
     ggagaaaccg tattagacgc tagcaccaaa gctgaaatta ctttagcttt aacaaaatgg       780
     tcggttaaaa attgtcgacc cttccaaata gttgcagatg aaggcctctt ggatcttgca       840
     gatgttttag ttcgaattgg tgctcggctt gggtcctcag tcgacattaa aaaaagccta       900
     ccccatccaa ccacgatttc tcgcaacata agggaattat atcagaaaga ggtatctcaa       960
     gttaagcagg aactggccca agtaagatcg tttggtttct ctataacctc agacgtatgg      1020
     actgatatgt ttctaaaacg ttcatatcta agcgttacaa ttcattatat tcttgaggat      1080
     aagctattta accgactgct tacgatgact tcaatgaacg gcgagtcttg cacaggtact      1140
     attaagatgt caaatttttt ctaaccgtta ttaatatgca atatatttca ggcgcaaaaa      1200
     taagaagtaa ggtagaagac tgccttaatg aatttagtct tgacatgcgt aaggcagtgg      1260
     ttgtcacaga ccgtggatcg aacatgatct cagccttcaa aaactatgat cacattaact      1320
     gtgtgaacca ccttttaaat aacgttattg aaaaaacgtt caaggatatt ccagaacttg      1380
     aactaatgtt atcgacatcc agcaaaattg taaagtattt taaaaaatcc ggcgaaaata      1440
     ttaatctaaa ttccagttta aaaagtattt gcccaactcg ttggaatact atttattaca      1500
     cacttaaatc aattgaatcc aacttcaacg atataactgc tatactttta agaaaaaatg      1560
     aactaagcag aatgagagat cttaactcgc gagaccttag ttccgttacg gaagtattgg      1620
     gccacttcga aaattcttcc aaaactttag aaggagaaaa atatcctaca ttacacttgg      1680
     tcataccaca tattggaaaa ctaaacaaaa tttgttgtga caattcgatt aatacactag      1740
     tagcaaaaaa actaaaagaa tctttggaaa acggtataaa aaatgttgta ctaaaacaca      1800
     tttcaaaatt tcataatctc gctcatttcc tgtttccgcc aaccaaccaa ttgctgcaat      1860
     tcactcaaga agaaaaaatg gagactatag ctctatgtaa ggaattgatg acggcaacca      1920
     atgaaaatat ggatgaggaa aatttaaatg aaattggaga tgaacatatc ttttccgatt      1980
     atataactaa atcggcctgt ggtgacatcc aagaaaagtc agaaaaagaa gttcagcgct      2040
     acctaaactt acaggtgaaa tactctgatg actttgatgt cctagcttgg tggaaaaaca      2100
     atgagaacta tgtcccatct ttgtacaagt tatcaagaaa aattttttcc ataccttcaa      2160
     gtagcgctgc ttcagagaga gtattttcaa gggccagaaa cttgctctca gaaaaaagaa      2220
     gtgctatagg atccaaccca accttagttg atgaaataat gtttttaaat agcaactaca      2280
     aatttaatta acaattgttc acatgaacat attcactatg aagtaatcta agtcccccag      2340
     aaaacaattt tttttacttg tgtcattgct tgtatattaa atttacgata ttttcaaatt      2400
     ggagtagact tttggttaaa taacttaaaa aatcattttt ttattcacag taggcgtttc      2460
     gcctacgtag tgtttcgaat tatctcgaat tgttcgaaac attgaaacat atgaaacata      2520
     ctgccaaatt gtttcgagat atttcgtcta taatgtttcg aaacattgaa actttgaagc      2580
     ttcgaatcat acgaatcacc gaaacatatg aaacgtactg tgacagaatg atcctaacac      2640
     tgttgattca tgcagggctc ta                                               2662
//
ID   hAT-5_LMi   repbase;    DNA;    INV; 2318 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2318
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3030-3030 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(191..649,610..819,788..1693,1644..1928)
FT                 /product="hAT-5_LMi_1p"
FT                 /translation="MQSESKKRTSGDLPSFKKEWEYQYFFVEKGENAKCLI
FT                 CGRILAGQRKFTIERHYKIFHKDEYSLFSDSERMGKLTELKKSDQTTPDES
FT                 DVSCFCYERSTTLFCHVFHVTDLVCYGALFYIFQDDSNDSPVVRASYKIAL
FT                 NIARAGKTLLKVSLYCKSWKNFAEGEFIKECINDAADFLCPLNANQFRAIS
FT                 LSRRTVTRRISAMAGDVYRQLISTGVYCIFHRTVQEFIAFSIALDESTDIS
FT                 DTAQLVIYIRGVDAALHITEDFLDMIPLKSTTTGAHILKAVEEAVDSVGLN
FT                 WDRLVSVTTDGAPAMKGEQTGFVGLLRKKLQRTEESLYSIHCILHQEVLCA
FT                 KVAKLGDIMQDVIRTVNYLRSHGLTHRQFRQYLAEIGEEYGDIPYHSEVRW
FT                 LSRGNVLKRFFELRIPISQFLKDKGRHDPKLENPEWVADLAFLVDITSHMN
FT                 KLNTSLQGENQLIWEMSEKVEAFTRKLALWERQLTSENAVHFPTLSSVQEK
FT                 SYTEYVSVIIAIKEEFLKRFGDVSHVSSFKRNFSSDLGMYHMYQAFEWFSR
FT                 PFAVSVDDIHPDLQMELIDLQCNSRLKDKFLLARRLIDFYQDFPQQEFPRL
FT                 HREAAKIMSVFGSTYVCERFFL"
XX
SQ   Sequence 2318 BP; 682 A; 464 C; 559 G; 613 T; 0 other;
     caggggcggg caaacgttgc acgcggcacg tgtgcgctta gcgccgcacg cgtgctgcac        60
     acgagcagtc gtggactggt gggcagcggc ggcaactcgc aggttgcggc agtgtgacaa       120
     caggcgtggc tgcggacgtt gatgccaagc gaccactaca tagcgaacgt tacatttcaa       180
     gcaccagaaa atgcagagtg aatcgaagaa acggacaagt ggggatttgc cgtcttttaa       240
     aaaggaatgg gagtatcagt atttctttgt ggagaaaggc gaaaatgcga aatgtttaat       300
     atgtggccgt attctcgctg gtcagcggaa atttactatt gaacgccatt acaaaatatt       360
     tcacaaggac gagtatagct tattttcgga ttctgagcgg atggggaaat tgactgaact       420
     gaaaaagagc gatcagacga cgccagatga atccgacgtc agttgctttt gttatgagag       480
     gtctacaact ttattttgtc atgtcttcca tgtaaccgat ctagtatgtt atggagcact       540
     gttttatatt tttcaggacg acagcaatga tagcccagtg gtacgtgcaa gttacaaaat       600
     tgcgcttaat attgcaagag ctggaaaaac tttgctgaag gtgagtttat aaaggaatgc       660
     atcaatgacg ctgctgattt tctgtgccca ctgaatgcaa atcagttccg tgccatcagt       720
     ctttctcggc gaactgtaac tcgtcgcata agtgccatgg caggtgacgt ttaccgtcaa       780
     ttaataagta caggagttta ttgcattttc catcgcactt gatgagtcca cagatatttc       840
     tgacaccgcg caattagtga tttatatccg cggcgtggac gctgctctgc acataacaga       900
     ggatttctta gatatgatac ctttaaaaag cactaccacc ggcgcgcaca ttctaaaagc       960
     cgtcgaagaa gccgttgatt ctgttggact gaactgggat cgtttggtgt cagtgacgac      1020
     agacggagca cctgccatga aaggggagca aacgggattt gttggattgc tcagaaagaa      1080
     gctacagcgc acagaagaat cattgtacag cattcattgc attttgcacc aagaagtact      1140
     ctgtgcaaaa gtagcaaaac taggggacat catgcaagat gttattcgta cagttaatta      1200
     tttgagatcc cacggcctta cacatcggca gtttcgacaa tatttagccg aaattgggga      1260
     agagtacggt gacataccat accacagtga agtccgctgg cttagccgag gcaatgtact      1320
     aaaaagattt tttgaactga ggataccaat aagtcagttt ttaaaggaca aaggaaggca      1380
     cgaccccaaa ttagaaaatc cagagtgggt tgccgacctt gcatttttag tggacattac      1440
     ttcacatatg aataaactga acactagttt gcaaggcgaa aatcaactga tttgggaaat      1500
     gagcgaaaaa gtggaagctt tcaccagaaa gcttgcgctg tgggaacgac agctcacatc      1560
     agagaacgcg gtgcatttcc ctactctgtc ctctgtccaa gaaaagagct acactgaata      1620
     tgtttccgta attattgcca taaaagagga atttctcaag cgatttgggg atgtatcaca      1680
     tgtatcaagc ttttgaatgg ttttcgagac catttgctgt ttctgtagat gatattcatc      1740
     ctgatctgca aatggaacta atagatctac agtgtaattc tcgtctgaaa gacaagttcc      1800
     ttttggcaag acgtctaata gacttttatc aagactttcc acaacaagag tttccccgtc      1860
     tccatcgtga agcggcgaag atcatgtcag tgtttggctc gacatatgta tgtgagcgat      1920
     tttttctgta atgaaactta ataagtcacg gttacgagca aacatgagtg atgaaaattt      1980
     gcgtaattgt ttgcgtttgt ctgtatgtag aaattttgta ccagacatta accgtattgt      2040
     aaacacaacc agtgatcatt aaataaaatg aatcataggt aataggattc aaaccatgat      2100
     ttattttcag ctatcctatt aaccctgttc ctttatttaa taaatcaagc taggaaaaaa      2160
     gcattacaga aagatgcggt gagaggacag gaaagggtat gacggggagg ggaggcaaga      2220
     gaagcgggtg gccggcttgc ccctgcgtgc acgcttcaca cagttaactg cacacgtgcg      2280
     agtgcgcttc acacgagcac aattcctgcc cgcccctg                              2318
//
ID   hAT-5_RPr   repbase;    DNA;    INV; 1731 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT-type DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1731
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3340-3340 (2015).
XX
DR   [1] (Consensus)
XX
CC   Termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           308..1213
FT                 /product="hAT-5_RPr_1p"
FT                 /translation="NAHTSDKIAELISTIHEEFGLYPSKIAATVTDNAANF
FT                 VKAFKEYGIKENCIEVEEQQDIYCCISESESDSETADFEISKNREFPLILP
FT                 SHIKCSAHTLNLCASADVIKTIKKTGILYSIHKRVMAKCNFLWRAASRPKT
FT                 AEGIEKIIGFILSRPGETRWYSLYDALSKILLMKGKSPQVFQFLKIKNSLS
FT                 EEDFLYIEEHLECAKPVADALDILQGEKHLYYGTLTAVVYALIPKLEKLLL
FT                 KQFIFCKPIVESLLNSINIRFKDIFQFANQDSMNAAIATIHTQNLKIGGSI
FT                 VFLPQYRPEF"
XX
SQ   Sequence 1731 BP; 600 A; 304 C; 317 G; 509 T; 1 other;
     aatatcttaa attttgtaat tgattccatg gtgcctttaa gaatagtgga taatgagcat        60
     tttaaaaaaa tattttcaga ccttaatgtt tcacatcaag gcttgaaaat gcttagccgt       120
     aggtcgttgg gcaggaaaat ggactctgtt tatgaacaga atgttgattg cttaaaacaa       180
     ctatttaaaa atgtaaaata tgtatgcagt actgctgaca tctggtctgg gcggcggaga       240
     agttttttgg ggctaactgc tcactggata gaagaagatc tgtagctctg gcgtgtagac       300
     gatttaaaat gctcacacat ccgataaaat tgcagaatta ataagcacca tccacgaaga       360
     atttggcctg tacccatcca aaattgcagc tacagtaaca gataacgcag caaatttcgt       420
     aaaggctttt aaagagtacg gaattaaaga aaactgcatt gaggtggagg agcagcaaga       480
     tatttattgt tgtattagtg aatcagaatc ggattcagag actgcagatt ttgaaatttc       540
     aaaaaacagg gaatttccgc tcatattacc atcccacata aaatgttccg cacacacatt       600
     aaacctctgt gcctccgcag atgttattaa aacaataaaa aaaacaggta ttttatattc       660
     catacacaaa agagtcatgg ctaagtgcaa ttttctatgg cgagctgctt cacgacctaa       720
     aacagcagag ggcatcgaaa aaataatagg attcattctt tccagacccg gtgaaacaag       780
     gtggtactcc ttgtacgatg ccttgagtaa aattcttctg atgaagggaa aaagtcccca       840
     agttttccag tttctaaaaa ttaaaaattc tctctctgaa gaagattttt tatacattga       900
     agagcacttg gagtgtgcaa agccagtggc cgatgctttg gatattttgc aaggggaaaa       960
     acacctgtat tatggaacat tgactgcagt agtttatgcc ttaattccaa aattagaaaa      1020
     actactttta aaacaattta tattttgtaa accaatagtg gaatcattac ttaacagtat      1080
     taatataaga tttaaggaca tttttcaatt tgcaaatcag gactcaatga atgctgcaat      1140
     agccacaatt cacacccaga atttaaaaat aggtggttcc atcgtgttcc ttccgcagta      1200
     caggccagaa ttttaaatta ttttaaagaa gcagtggccg cagaagtaat acaggaagaa      1260
     atgaacttcg aggaagcctc atcgaccgat agaactgact ttttcaactt cgaaaatgaa      1320
     gctgctatta cttgtcaaac aacttcggca gaaattcagg tgctgcacta tttaaaaggt      1380
     agtcagcgga atctggatac gttagagaaa tatccagaaa taaaaaaagt ttttatcaag      1440
     tacaacaccc cctgccgtcg tcggcacccg ttgaaagact attcagctac gcaacgatgg      1500
     ttaatctacc gaaatgcagc aaactgagcg acaaaaattt cgaaaccagg gtgattttaa      1560
     aagcaaattc gcatctatta agtgatttaa agttgcagga aaaaagataa ttataaattt      1620
     tccctgtttt ttgaaatttc aaaatctgca gtctctgaat ctgattctga ttcactaata      1680
     caactataaa ttttaattat ttcaattttt ttatttcctk ttctttcaac t               1731
//
ID   hAT-6B_LMi  repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1642
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2919-2919 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1642 BP; 483 A; 330 C; 313 G; 505 T; 11 other;
     tagaccgcgg atccttaggt tataacctat tcttttcctg agttcctagt tgcaaataaa        60
     cttgtactta cgcgtttcat gactaattaa aaccgaaacg ctacttttat agcacctaaa       120
     ataacctatt tcggcgttaa cacctgcttt tgcctatttc agctttaaaa tcctaaaaag       180
     cacctatttc ttctatttcg gaaagacttg cttcaaagta tcaaagaaaa cagtattgcc       240
     atcggtctgt tccgkcagag ttaacgctgc gtaaaaaaat tatgtggact cagctgatac       300
     ggacgcactg caaagaatcc gagaktatac tgcgtatgga tttctgaaga tgaaactact       360
     gacaatcttg gccggcacat tgcaaaactg attgttggca atccagagct tatttcgttt       420
     gttcaaaaca actcccaaak actaaacaac aaataatagc awactttgtc aacaccgtca       480
     atgtgctaca tgcaaaggcg taaatgaaaa kgaagtgctg gtctkgcttt gacagatgcc       540
     gctgcacata gcttccaccg tttcactgct ccaagtcttc taccgtttga tgcgcatgta       600
     acttgtgtag macatgatat gaaccgtgta acacagctcg taaggctaga gttccctaac       660
     gtaaataaat tattaatctc catggtaaga aagtttttgg tgagacatag ttaagggtgc       720
     aggcattcaa agaacaattt ccagatgtcc cctttgcacc tgaatctgwt tcccgctggg       780
     gcacgtggtt agcagcagta taattctacg ataagcacct cccagctgtc cagaagtttg       840
     ttgaaaatct accggaggat gccacttctg taacttatgc aagatccctc agttcaactt       900
     gagttggctt atattatggc gggagttatt tccgaattag aacgctcagg aagacctatc       960
     tacgaaacat tcttgctgga ggaagtgaaa aagaaaatta atgaatcgca ggtgtagttg      1020
     gagaaaaagt acgggaaaaa tgcaacaggt tttccagaac accggcctga aggacctttg      1080
     ggtgctagca tccatattca gcggaaaatt gtgttccatg tgttcctgtc cgacataccg      1140
     aamgtgaagt gctccctgtc amatctggtg atgtaggaac attcattctt ggctcttaaa      1200
     ttaatactaa acgacaagag ccatggsttt tctctggaaa acttacaaac tatttcagtc      1260
     atttactgtg aagccaacta tgggctgaat gtttgagatc actggtttat tcagcaattg      1320
     ttatattgta tatgtgtctc gacatatggc ctctgatttg cattgtattt ttatcttcga      1380
     aaaactataa aattttggta tcaatttgat cactaatgtt gtgtgatgct ttctgtgttg      1440
     aggaactgtg cacgttttca tttccttatt gtaaacgaat aaaaatttgc tcacaagtca      1500
     acattacgta ttttacatta cgttttttcc ctctgattaa taacttttag cctattttag      1560
     ttttatttgg cctcaatcag gcaacgaaag agcaatttta ggcgcctaaa attctctttt      1620
     tagaccaaaa atccgcggtc ta                                               1642
//
ID   hAT-6_AP    repbase;    DNA;    INV; 2428 BP.
XX
AC   Contig27391;
XX
DT   20-AUG-2009 (Rel. 14.08, Created)
DT   20-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_AP.
XX
NM   hAT-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2428
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1790-1790 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(700..1083,1087..1848)
FT                 /product="hAT-6_AP_1p"
FT                 /translation="MSIKLRSDFQIFLIGSQITQIHGSKLPSNGQVLSVFF
FT                 YNMRTVNLTTRESAALAVRECCIFWEKARIPIRAIHHCITKLINLYEEWRN
FT                 LQKNAQKVGESYRLKENDLKKKIDLLFDIAHFDALKLIKIVDKQFLVNQRL
FT                 PGRPGCLGGIDIKGEIKENIHIQRKLNESKRKEIYNTSCASTSTLLDNSFE
FT                 QNLETDSLESSDISELETSINSLELIEPPTKKKKCRGKINFITPKLAGALD
FT                 RCQLSIRDSVYVLQATLEALNFNTDDYVINQTSIHRARESYRCERGEPIKL
FT                 QFKKSLPNYAVVHWDGKMLPDTTTRNATVERLPIVITSKNIEQILGVPKLE
FT                 RSTGEEQAAAVCNALRDWGLCNIVQALCCDTLRPIPVV*"
XX
SQ   Sequence 2428 BP; 878 A; 317 C; 398 G; 835 T; 0 other;
     taaatcggtg tgtatacata taaaagtgaa ctgcaaacaa tttcaggtca attaaataaa        60
     gttaacccgt gccgacttga agttaaagtt tgagcttaat acatttttaa ataattttag       120
     acaatttttg tatttccgta aatatttcgt aaaccattat gaaaatcgta attttttata       180
     atatgttttt tcaagtaaat taaatttcca atatatttta taatataaca ttttttaata       240
     aatctattaa tttataagat gcataagttt taatcttaaa aaacagaatt tctccacaaa       300
     tttataattt acattttatt attttattgt aggattaata ataataatct tagcttataa       360
     tatttggtaa aattataaaa tgttcaatgt tctaagtaat attatgtact tcttatacac       420
     ttatttgtgt aattattagt tcttcatatt ttcgtattat actcgtataa ataataaacg       480
     ataagattgt gaaaacgatt aagatgtgtt gaaatacgta ttgtttatct ataacttatc       540
     gcattaatag tttccgtagg tattagtctt gctttataat ttataaaaga tattattttg       600
     ttagtgatac tcgtttattt cagttgtgtc aacgtcttat gtgttaaagg ttattattgt       660
     gtttgtcgtt agtaattcat aataatttaa atagcaaaaa tgtcaataaa actgagaagt       720
     gattttcaaa tatttttaat tggatctcaa atcacacaaa ttcatggctc aaaacttcca       780
     tccaacgggc aagtactttc tgtatttttc tacaatatga gaaccgttaa tcttactact       840
     agggaaagtg cggcgttagc tgtacgagag tgttgcattt tttgggaaaa agcccggatt       900
     cctattcgag ctattcatca ttgcataact aaattaatta acttgtacga ggaatggcgt       960
     aatctacaga aaaatgcaca aaaagttggt gaatcttatc ggttaaaaga aaatgattta      1020
     aaaaaaaaaa tagatttgtt atttgatatt gctcattttg atgcgttaaa attaattaaa      1080
     atataagttg ataaacagtt tctagtaaac cagcgtttac cagggcgtcc tggttgtctc      1140
     ggaggtatag atattaaagg agaaataaaa gaaaatattc acattcaacg aaagttgaat      1200
     gaatcgaaaa gaaaagaaat ttataataca agttgtgctt caacttcgac attactcgat      1260
     aactcatttg agcaaaattt agaaactgat agtctagaaa gtagcgatat atcggaatta      1320
     gagaccagca ttaattcttt agagctaata gaaccaccaa ctaaaaaaaa gaaatgccgt      1380
     ggaaaaataa attttataac accaaaattg gccggagcgt tagatagatg tcaattaagt      1440
     attcgagatt ctgtatatgt tctccaggct actttagaag ctttaaattt taatacagac      1500
     gattacgtaa taaaccagac ttctatacac agagctcgag aatcataccg ttgcgagcgt      1560
     ggtgaaccaa taaaattaca atttaagaaa tcactaccta attacgcagt agtacattgg      1620
     gacggaaaaa tgttaccgga tactacaact agaaatgcaa ctgttgaacg acttccaatc      1680
     gtgataacta gcaaaaatat agaacaaatt ttaggagtac caaaacttga gcggtcaaca      1740
     ggtgaagaac aagctgcagc tgtgtgtaat gcattacgag attggggact atgcaatata      1800
     gtacaagctc tgtgttgtga cacactgcgt ccaataccgg tcgtttaaat ggagcatgca      1860
     ttttaattga aaaaaagtta ggtagagact tactacatct tccgtgtaga catcatattt      1920
     atgaacttat tttgagagcc gtttttgaaa ttaaaatacc tcaagttact acaagcccaa      1980
     gtattccatt atttaaaaat tttcaaaaac aatggtgtga aatacatact aataaatata      2040
     atagtgggat tgaagatcaa gcatgtggtg aatttagaaa atgtgaagga agatattctt      2100
     agttttgtca aagataaatt aaaaattaaa cactcgtgga gattaccgtg aatttttaga      2160
     attagtagta atgtttcttg gtggtgattt ggaaaacaat ataacaattc atcctccggt      2220
     gctatgcatc aagctcggtg gatggcacgg gcaatttatt gcttgaagat atttttattt      2280
     agaaattatt ataatattgc agagtctgtt aaaaaggcaa ttggagatat ttgtgttttt      2340
     atcattatat tttatgttaa agcttggtta ggttagattg acctaaaatt ttttgcagtt      2400
     cacttttata tgtatacaca ccgattta                                         2428
//
ID   hAT-6_DBp   repbase;    DNA;    INV; 2198 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2198
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 611-611 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Partial sequence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2198 BP; 801 A; 360 C; 405 G; 631 T; 1 other;
     ttttttattt atgatactaa agttataaga tattacatag gttgtgattg cttcatctga        60
     aataaaagaa aaaatactaa atggagacta ccaactggta gaaaaaagag ggcgtagtaa       120
     tgtgtgggag tttttcgcca aaatcaagga cgaaaatgga gaggaaattg acgggtttgt       180
     ggcatgcaaa atgtgctaca ccgtaatgaa attttccggc agcacatcaa atatagtgaa       240
     gcacaaatgc tacacaatca attcacacaa agcccaaaac gcagcactca tggaagtgaa       300
     tcctgaagtg aaacaggagg gtgttgaaat tttgacggaa tgggcaataa aaaactgccg       360
     atccttcaaa atcgtggagg atagcggttt aaaaaaattt gtcgtacatt ttaaaggttg       420
     gagcaacgtt tgggccgaac gttgatgtag aaaagctact tccacatcca acgaccattt       480
     cgagaaaaat ttcatccatg tatgagacac atttcggccc aattaaacaa gaaatagtca       540
     caaataaatg taatggttat gccataacga gtgacatatg gacggacaat ttttaaaagc       600
     cgcatatatt tcatgcacag tccattacat aaaggatgga gttttgattg agcgtttgat       660
     ggccatgaag tcgatgaagg ataatgcgtg cacaggtttg ctattcaagt aactcttaaa       720
     tccaagattc ttatttttcc ccttatttca taggtgcaaa tattttgtta aaaatggatg       780
     aaattttaag cgagttcgat tgcaatttgg gaaatgataa gccagtaatc gttactgatc       840
     gcgggtcaaa catgattgct gccttccggg accataataa aatccactgt attaatcata       900
     tgctaaataa tacagtggaa aaagccatta aagaagttcc tgagatgggc gaaatggtga       960
     caacctgcag caaactggtt aaatttttta aaaaatctgg gaacaattcg ctgttaggct      1020
     tcactctaaa aagcttctgt ccaactagat ggaacactgt gttctatttg attaaatcaa      1080
     tagaagccaa ttggttggac ataagcaata ttttaattga gaaaaatcaa attggaagac      1140
     tagaaggcct tcacataggt gaactttcat ctgtagcaaa aattttagag gtatttgaaa      1200
     acgtctcaaa aaaacttgag gctagcaaat accctactat acatttggta atacccaata      1260
     acaccaaact aaaaaaaaca tgtttgagcg gcacaaacga ctcaaaaata ggagagtccc      1320
     taaagattgc cctcttcaca aatattttgg ctgtgaagag ccgaatattg aaatgtggca      1380
     caagatcgct ctatttttgt ttccgccaac aaacaaatta aaaaacttcg aagaaagtga      1440
     aaaattaaaa ataattactg agtgtaaact gattatggaa agttttaaag attacaccaa      1500
     catcgcagaa gccgagtgga aagaggaaga cgacgaattt tcagaattcg ttgaagaagc      1560
     ttcataagcc aggtgtcgac gatgttgaaa gggagattac aggatatagc aatattaatg      1620
     tcccttatgc aaccaatttt gattgcttag gttggtggaa tatgcataaa aatttctttc      1680
     cactattgca taaaacgagc tccaaaatat tttgcatacc agcaagtagc gcatcctccg      1740
     aaagaatatt ttcggatgca agaaatttaa taaccgaaaa acgttgcata ttagcaaata      1800
     attcagacaa tgtaaataaa ataatgtttt tacattccaa tttaaattag ttagggtata      1860
     gtaattaaga aattatagaa ttataaaatt aaatttaata atacatatat gtaaattaag      1920
     cgaaataata atgaatttac aaacaattta caaggacttg ctccactttt caatattttt      1980
     tttcagcgtw taaaaataca ggcaaatatg catagttgta tcggacattc tagaatgcat      2040
     tcgaaacaat tcgaatgcga actgcaactc taactcattc aattcggttt tcatccccca      2100
     aatgttgtgc gagtgagacc tacacagtca ctcattcatt ttttttcgtc tcagcattct      2160
     atctcactca attcaatttc aaggttgtgc atttgaat                              2198
//
ID   hAT-6_DK    repbase;    DNA;    INV; 2670 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2670
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1229-1229 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 12-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           482..1729
FT                 /product="hAT-6_DK_1p"
FT                 /note="transposase."
FT                 /translation="MTETAQTLKNKIDSGTYKVNKRTKGKSLIWNILYEIL
FT                 KEDDTVVDGWIYCGKCKKILKYVVNQTSNLSRHKCCVELKQPKEVKKVSES
FT                 DKKQATIKCTEWVVRDCRPFSAVSGSGFKNLVNFFIKIGATYGENVDVDDL
FT                 IPDERTLSRNAEKLAMEKRKIVAEDVKDLMESGGVAATLDMWTDQYVQRNF
FT                 LGVTLHYQKNYKLHDIILGIKSMDYAKSTGENILDKIKSLFLEYNVENIKN
FT                 ITFVTDRGANIKKALENNIRLNCSSHLFANVLQKSFEQTTELDETVHACKK
FT                 IVKYIKKANLQHRLQTTVKGACPTRWNSNYTMMKSIVDNWLTITQLLSESP
FT                 GAQRLMDVNISILKPLVELLQHFERIFKELQTCSLPSLCFVIPSISKMYEL
FT                 CDANIDDFSSVALLKENIKQTS"
XX
SQ   Sequence 2670 BP; 888 A; 510 C; 536 G; 736 T; 0 other;
     cagagaacgg caagggtgcc tgtttcgaca actctattca cacttgtcaa aattttggtg        60
     ccggtgtttc ttaccaccgg caaataaagt aaacgagtcg cacacacata aacttgcacg       120
     agtataacga gtggcatgtc taccgagcac ccgattacgt tttcaacgat tgtttttatt       180
     cattttacac ctggtacttt tcgttgctcg gtgccggtgg cactcacaca cataactaaa       240
     cgagcgagta gttgaagcac acataagtaa acgagcgagt gggtaaagca cacaaaaaat       300
     actcgggtgt tttgaagtca tccgagtagt ttttgtgtgc tttacccact cgttcgatta       360
     gcattcggtt tttttactat gtgtcaacga cgataatcgc actcttctcg ctcttgtcaa       420
     cgcacgtgaa aatcgacggc ataacattgg tttggtgacg ctaaagacaa aaaattgcaa       480
     gatgactgaa actgcacaaa cattaaaaaa caaaatagat tcgggaacct acaaagtgaa       540
     caaaagaaca aagggaaaaa gcttaatttg gaacattttg tacgaaattt tgaaagagga       600
     cgacactgtg gttgacggat ggatttattg cggtaaatgc aaaaaaattc taaaatacgt       660
     ggtaaaccaa acgtcgaact tatctcgcca caaatgttgt gtagaattga agcaacccaa       720
     agaagttaaa aaagtgtcag agagtgacaa aaaacaagcc acaataaagt gcacggagtg       780
     ggttgtgcga gactgtcgtc cattttctgc agtttctgga tcgggattca aaaacttggt       840
     caactttttc atcaaaatcg gtgccaccta tggcgaaaac gtggacgtgg acgacctaat       900
     acccgatgag agaacattaa gccggaatgc ggaaaaacta gccatggaaa aaaggaaaat       960
     tgttgctgag gatgttaaag atctaatgga aagcggagga gtggcagcaa cgctagatat      1020
     gtggacagac caatacgtcc aaaggaattt tttgggtgtc acattacact accaaaaaaa      1080
     ttataagctt catgacatca ttctgggaat aaaatctatg gattatgcta aatctacagg      1140
     tgaaaatatt ttggataaaa taaaaagctt gtttttagaa tataatgttg aaaacataaa      1200
     aaacataaca tttgttacgg atagaggagc gaatattaaa aaggcgttgg aaaacaatat      1260
     acgtttaaat tgcagcagcc atcttttcgc caatgtttta caaaaatctt ttgagcaaac      1320
     aaccgaattg gatgaaaccg tgcacgcttg caagaaaatt gtaaaatata tcaagaaggc      1380
     gaacttgcaa caccggcttc aaaccacagt gaaaggggca tgtccaactc gctggaattc      1440
     taattatacc atgatgaagt ctattgtcga taattggctg acaataacac agttgttaag      1500
     cgagtctcca ggagcacaaa gacttatgga cgtcaacata tccatattaa agccgttggt      1560
     ggagttgctg cagcattttg agcggatttt taaagaacta caaacatgca gcttgccgtc      1620
     actgtgtttc gtgataccct ccatttccaa aatgtatgaa ctttgcgatg caaatattga      1680
     cgatttttca tcagttgccc ttttgaaaga aaatataaaa cagacgtcgt gaaatttgga      1740
     aaaaaaatgt gagtgtatgg cataaggcgc atttttttgt atccacctgc agccctcatg      1800
     caacaggatg acctaattga aataaaatta ttctgtgctg atcagatgga aacactcaat      1860
     agctctgtac taaaaaatac aaatagtttt ccaccctatg cagaaagctc aaatagccca      1920
     aacaatttac tcaaaactca agctcaatca cccgtttcaa gaacatcatt tttttcccga      1980
     agttagttgc cacatctaat tctaattcgc gagaatctgt actggaagaa atagaaagat      2040
     attgcaagga aagggtacca ataaccgaac attttgaagc tatcgactgg tggaaagcta      2100
     acgagttcaa ttaccctcgg ttgtcgaagc ttgcctttat actccatgcg atacctgcaa      2160
     gcagtgccgc cgctgaaagg gtgttttcgt tggcaggcaa tattatcact gaaaaacgaa      2220
     atagactgtc tcccaaatct gttgacagta taatattttt gcactccgtt tttaaaaaat      2280
     atgaatattt ccgaatttta aaaatagaac aaatgaaaat gtatactgta tttttaattt      2340
     actttaatgt attttggttg taccaggttg caaaaggaat cacaaaaatg aactagagca      2400
     tctagtcacc gggtgttgtt tttggctcaa gtattgtgtt ctagctttta ctcacttctc      2460
     tttcgagcat ttctcgctca acttcaacac acacaccgaa tcaaaataag actcctagac      2520
     gaactacgct tgtgtgcaca aatatacgag aattattgtc gagtgtttac tcgcacccta      2580
     ttctcgttgc cgaaaaataa ctcgggtgtc aaaaatactc ggtgtttatc cggtggtccg      2640
     gttgatccgg tggtttgctg ccgctctctg                                       2670
//
ID   hAT-6_DRh   repbase;    DNA;    INV; 743 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-743
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1432-1432 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~90-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 743 BP; 245 A; 132 C; 135 G; 230 T; 1 other;
     tagaggtgca gaaacatcga tgaaaacatc gatgcatcga tgtttttgaa attttctaaa        60
     tcatcgatgt tttttttcaa ccatcgatgt ttctgtgccg tcactatcaa gagaaaaagg       120
     caaaggaaag ctacgtacaa aaaaaaaggt ccgtaccaag ccagactgaa tcttcggact       180
     atttcaaaaa ataccacggc gcgctccgaa gcaatagtta tgctcaggca gcatatagag       240
     actacgaatg aggccgaagt gtgcgagccg ttgaagtatt ggaaggtacg tttctaaatt       300
     gttttaagtc attattttta gtaattaatt atgctttcag gagtcgtcga acagtatggc       360
     gcccttcaaa gaagtggcaa aaaaatttct atgtgtccct gccacttcct gcgagtcaga       420
     aagagccttc agcaaggcgg ggcaaattat ttctgaccgc aggacgcgcc taaagcctga       480
     tattgttgac aaacttatgt tcataaacaa aaatcacatt tttttaaaaa atgtttaact       540
     aaattttaag aaatgatctc cgttttctaa accaagtgaa taaatgtttt gtttttctat       600
     ttttaataca accacaagtg tgcattttaa taatttaaaa aatattattt taatttttta       660
     aaacatcgat gtttcatcga tgttttgggt gaaaaasatc gaaaacatcg atgtctccat       720
     acatcgatgt ttctgcacct cta                                               743
//
ID   hAT-6_DTa   repbase;    DNA;    INV; 2468 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2468
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6216-6216 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(258..422,426..1202,1300..1803)
FT                 /product="hAT-6_DTa_1p"
FT                 /translation="MPKTQKKGDRLKEWLKDINESAITVIDDNLYCKSCQK
FT                 HVRNVNILNYILSYNLMSIGSDRKSQLIQHIRTELHKQKPNSITSRNEQET
FT                 PFFSNLCEAMIAVNLPFKSINNNIFRTFLHKYTNQNIPDESTIRKNYLDRS
FT                 YQKALQEIKNEIGNNAIWISVDETTDRNGRYIANLITGSLDEKKSTRPYLI
FT                 ACRQIEKVNNSTISRFVNNGLRSLWPDLNEENVLLMVTDAAAYMIKAGQNL
FT                 KVFYPNMIHVTCLAHGLHRVAETIRGHFPKVNKYISDVKKIFLKSPHRCAQ
FT                 YKLMLDIELPPEPNNNEMGNLDVVNSLGSDDAQAIQNVQEQLKDLTVKREL
FT                 LTIQNYFCTMPSIIENLEKGSNSLKQNMVLLSKAQEMINDVPESLGDILKK
FT                 KLKDVLLKSPDFKTIEKLNDSINSIDGMNSIDDLNMEKIYKYKYAPLTSCD
FT                 VERSFSAFKLLLTDKRTKLTVENIEKILVTYCKQNYN"
XX
SQ   Sequence 2468 BP; 906 A; 408 C; 408 G; 743 T; 3 other;
     tagacatcgg attatatgca aaatcatatt tttaacggct tgtcgaaatc aaatttcgat        60
     tggackgaaa ttcgtttcac gttaaaataa taagattaag gccatgttgt ttttgcatat       120
     tcgacatatc ttgcatatca agaacatatc caacatattt tacgacatat tatcaaagca       180
     ggcttttgtc agaatgttta agwattcaaa aaatcatttc aaagagagtt tgttgtgaag       240
     agttgattat taaaaaaatg ccgaaaactc aaaagaaagg tgatcggctt aaggaatggt       300
     tgaaagacat taacgagtct gccattacag taattgacga caatctatac tgcaagtcct       360
     gccaaaaaca tgtaagaaat gtaaatatat taaattatat tctatcttat aatttaatgt       420
     cctagattgg tagtgatcgt aagtcgcaac ttatacaaca cataagaaca gaattacata       480
     agcaaaagcc aaatagtata acatctagaa acgaacaaga aactccgttt ttttccaatc       540
     tgtgtgaagc catgatagca gttaacctac catttaaatc aattaacaac aacattttta       600
     gaactttttt acacaaatac acaaatcaaa acataccaga cgaaagtacc atacgcaaaa       660
     actatctaga cagaagctat caaaaagccc tccaagaaat taaaaatgaa atagggaata       720
     acgcaatttg gatatcagta gacgagacaa ccgacaggaa tggacgttat atagcaaatt       780
     taataactgg atcactggat gagaagaagt caacgcgtcc atatttgatt gcttgtcgtc       840
     aaatagaaaa agtcaacaac agtacaattt ctagatttgt aaacaatgga ttgagatctc       900
     tatggccaga cctaaatgaa gaaaatgtac tgcttatggt tacagacgca gctgcttata       960
     tgataaaggc tggtcaaaac ttgaaggtat tttatcccaa catgatacat gtgacttgct      1020
     tggcccacgg attgcatcgg gtcgcagaaa ctattcgagg acatttccca aaagtcaaca      1080
     aatacatatc ggacgttaaa aaaatatttc tgaaatctcc ccaccgttgc gcccaataca      1140
     aattgatgct agatattgaa ttaccgccgg agccaaataa taacgagatg gggaacttgg      1200
     attgaggctg catgctttca tgctacaaac tttaatggaa tcagtcgtgt aggttattct      1260
     tatttattga cagtaactat ttactaaata tatttatagg ttgtaaattc tctaggaagc      1320
     gacgatgctc aagctattca aaatgttcag gagcaactaa aggacttaac tgtaaaaagg      1380
     gaactcctaa ctattcagaa ttacttttgc accatgccgt caataattga aaatttagaa      1440
     aaagggtcca attctctgaa gcaaaatatg gttctgctga gcaaagctca agaaatgata      1500
     aatgacgttc cagaaagctt gggagatata ttaaagaaaa aattaaagga tgtactattg      1560
     aaaagcccgg actttaaaac gattgaaaaa ctgaatgact caattaacag catagatgga      1620
     atgaattcga ttgacgattt aaacatggaa aaaatctata aatataaata tgctccattg      1680
     acgtcgtgcg atgttgaaag aagcttttcc gcattcaagc ttttactcac agacaaaaga      1740
     acaaaattaa ctgttgaaaa tatagaaaaa attttggtca catattgtaa acaaaattac      1800
     aactaaaatg tactttaaca tcctaactat tgcttagcgt gatccccaaa gcactaaata      1860
     cactcatatt aaatacgtat tttttctgat ttttttggtg taatggcgaa tatataaatt      1920
     tgttgcgtgt ggtttgcaac aatttttttt ttgtttaaaa ccaattccag ccgaattggg      1980
     gctttgcact ttcaatttcc ctgtggatcg gctaatgtgg cgggtacagt tttcaaaaat      2040
     tatattgatt ggtccaactt tttaaattat agaaataagc agtagtttga tgaaaatgtt      2100
     cacaaactaa cacgattttt gaaaccgatt ttcttaagat acggtggtgc aattgtagct      2160
     atttttatgt ataccccttc tgtcasctac agaaatacat tttaaacatt tttaccatta      2220
     agctcgaaat atatgtgcct gtaagagaca gaaacatatt cgacatattt tgcatattct      2280
     cgacatattt tacatattcc cgacatattt tgcatattct cgacatattt tgcatattcc      2340
     attgcataaa aaaatgcata tttgcgatat gtcgtcgtca ttcgaatacc aatttaatat      2400
     agtgcctaaa tccaaaattt ggcggtattt gaagcaaaaa tgaagaaaaa catataatcc      2460
     gatgtcta                                                               2468
//
ID   hAT-6_LMi   repbase;    DNA;    INV; 2827 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2827
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3031-3031 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(736..834,924..1097,1129..2496)
FT                 /product="hAT-6_LMi_1p"
FT                 /translation="MHRSKKKKKQVLFTFSQREQISTLCSDRRVKCYGSGC
FT                 KIFRIIQQMGKLFSAKHATRRLVDVFLRLLIFLSLRILFYRYPLVIRNTLY
FT                 MRFVSSVKKSHLTQHADGIAHKANVERKSKLKQTLLTNKSGESSEKNKFCS
FT                 DLCHAFVAANIPFRKLENPIFRGFLEKYCHQSIPAESTLRKNYVDSAYNAA
FT                 LHRIREDVGESCIWISVDETTDSLGRYIANLIIGKLDPDAPSRAHLIYSKQ
FT                 LAKTNQQTIAQFVNNGLKVLYPNGVDENKVLLAVTDAAAYMIAAFQLLKVF
FT                 YPLMLHVTCVVHGINRIAEQVRLQFPKVNKVISMVKKIFVKAPSRIQAFKE
FT                 QLPDVPLPPEPVVTRWGTWLIAAEYYSTHLSAVQKVVENIPEDAASVTAAM
FT                 ELLKDSSLKRDLSYIRAHYTFMARIISQLEGSGRPIYDNISLLEEVKMKIN
FT                 EAPGEVGGKVRAKMQTVLQKNTGLKELCAAADILSGKSSTPDCSIPVQHVP
FT                 KMKYAPVTSVDVERSFSAYKLILTDKRHSFSLENLEKILVIYCEANYGQNM
FT                 "
XX
SQ   Sequence 2827 BP; 844 A; 555 C; 536 G; 892 T; 0 other;
     tagaccgcgg attttaggta aaaacctatt ttgttcctga gttcctattt gcataaaaat        60
     ttgtacttat gcgtttcatg actatttaca cttaatagcg ttaattctat aggacctaaa       120
     aaagcctatt tcgatgttag tgcctatttt tgcctatttc ggctttaata tcctaaaaag       180
     tgcctatttc atcatataag tttttccaca ctatacgaca gatggaaaaa atattttctg       240
     cccagcgtgc agcaaggtgg ctagttgata tgcgctcatg cttcgtattt gcctaacact       300
     tcggtctttt tttatttttt tatatcgcta tccctgttaa taccaaatac tctttatagg       360
     tgttttatta ttcatatgta aaaaatagat cacggatctt taggttaaaa cctatttttt       420
     ttcctaagct ccaatttgca tataagttgg tacttatgcg gattaaaaaa tcacaatgtt       480
     aatcgtagac gccctctata gctaaattac tgcccttcgc gcattttctc gctgctgtct       540
     acaggcaatc ctatcaaact actctgtttc gtgaaaggta ttatacgtga attttccggt       600
     tcgaaaaata atttgccagt agtgagatgt tttcatctga agcaccggta gattccattc       660
     gcttgttcag aaggggcggc catctgtcag gtgccatatg tccagcaacg agtacggtct       720
     tcccctaccg ctcccatgca ccgcagtaaa aagaaaaaaa aacaggtatt gttcactttt       780
     tcccagcgag aacaaatcag tacattgtgt agcgaccgac gtgttaagtg ttactgacgt       840
     tctaagtgca aaataaattc tagtttctgt gtgagaatac tacgccatgc cgaaaacagc       900
     tagttcaaag tctactcata taaggcagtg gctgcaagat tttccgcatt atacaacaga       960
     tgggaaaatt attttctgcc aagcatgcaa caaggaggtt agttgatgtt tttcttagac      1020
     ttcttatttt cctgtcactt aggattcttt tttatcgcta tcctttagta atacgaaata      1080
     ctctttatat gcgattctaa actgcatttc ccttttctct cgtattaggt ttcgagtgtt      1140
     aagaaatctc acttaactca gcatgcagat ggaatcgcac ataaagctaa tgttgaacga      1200
     aagtcaaaat tgaagcaaac tcttttaacc aataaatctg gtgaatcctc cgaaaaaaac      1260
     aagttctgca gtgatttgtg tcatgcattt gtggcagcaa acatcccctt tcggaaacta      1320
     gaaaacccta ttttcagagg ttttcttgag aagtactgcc atcagtctat tcctgcagag      1380
     tcaactttac gtaagaatta tgtggattca gcttacaatg ctgcattgca cagaatccga      1440
     gaagatgttg gagaatcttg tatatggatt tctgtggatg aaactactga cagtcttggc      1500
     cgttacattg caaacctgat tattggcaag ctagatccag atgctccatc cagggctcat      1560
     ttgatttact caaaacagct tgcaaaaact aaccaacaaa caatagcaca gtttgtgaac      1620
     aatgggctta aggtgctata cccaaacgga gtggatgaga ataaggtgct tctggccgtc      1680
     actgatgctg ctgcatatat gatagcagcg tttcaactat taaaagtatt ctacccattg      1740
     atgctgcacg taacttgtgt agtgcatggg atcaaccgca tagcagagca agtaaggcta      1800
     caatttccta aagtaaataa agtaatatct atggtgaaga aaatttttgt taaggcacca      1860
     tcaagaatac aggcgttcaa agaacagctt ccagatgtcc cactgccgcc agagcctgtt      1920
     gtcacccgct ggggcacgtg gctgatagca gcagagtact atagtacgca tctctcagct      1980
     gtccagaagg tggttgaaaa tataccggag gatgctgcat ccgtaactgc agcaatggag      2040
     ttactcaaag attcttcttt aaaacgggac ttatcttaca ttagggccca ctacacattt      2100
     atggcaagaa taatttcaca attagaaggc tcagggagac ctatctacga caatatttct      2160
     ttgcttgaag aagtcaaaat gaaaattaat gaagcgccag gtgaagtagg gggaaaagta      2220
     cgggcaaaaa tgcaaacggt tttgcagaag aacactggcc tgaaggagtt gtgtgcagct      2280
     gccgacatac ttagtggaaa atccagcact cctgactgca gcattcctgt ccaacatgtg      2340
     ccgaaaatga agtacgcccc tgtcacatct gttgatgtag aacgttcttt ttcagcgtat      2400
     aaattgattc tgacagacaa gcgccacagt ttttcactag aaaacctaga aaagattttg      2460
     gttatttatt gtgaagccaa ctatggtcag aatatgtgaa actacgaatg tattaattaa      2520
     accattgcca catctttttt acggagatct ttatcttgca ggaactcaaa aatatttgga      2580
     gttatgttca acattaatgt tgtagattgc tgtgctctgt aactgtgtaa atattcattc      2640
     tccttgtttt aatgactaat aagatgttca tactgtcaac actgtgtatt ttaatttatt      2700
     tttattttct ctgcatcatt tttattagag cctattttag gttttatata gcctaaatga      2760
     actactgaag gagcctattt taggtgccta aaacacactt ttttacgacc taaaaatccg      2820
     tggtcta                                                                2827
//
ID   hAT-6_RPr   repbase;    DNA;    INV; 2743 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT-type DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2743
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3341-3341 (2015).
XX
DR   [1] (Consensus)
XX
CC   Termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..2534
FT                 /product="hAT-6_RPr_1p"
FT                 /translation="MTEMENSVKNDVPVERCTAPDNLALPSTIVEDHLQPL
FT                 YSVEVESTPCDWLATSQILLEESNMEPYNEVLLQVSEQYQVNEDEEIIEKL
FT                 LDKGFSHFTRAEKLEIIKCRPTPSLRLNCAHKYKTARNFHVRWYDKFKWLC
FT                 GSAKKDKMYCWPCLLFSNVRYHKNWNELGQNNLTNIHTSFRQHESSKSHIV
FT                 AYMKMLKFNRVKYEFRMDAPFCENADSYNEIVKKNRYIIKCLVDTICSDRL
FT                 QSLIRLDNCNNCAQLLSELAKNDCKLRDYLNSTNILVNLTDKILCDIITSI
FT                 SKAIFVKIKYELEDTRYCALFIERIEDKNENVYLIIICRFINKLRIVQHRL
FT                 ISFLEVSKYPYSNDLLQAFLIIIHDLGCCEKLISIAYDRSLFSRDFTNQFE
FT                 IAIRKLCKHVLLIDYTPPNAAINVFNSIKSTKAGKLFFIKLSGLTFLLTSS
FT                 KYDRNLSEYIERFLPDFNSNEWTYPKNVLSLAKQQSEILSLIEHITKNAEL
FT                 YLSQTYLQALGLKVCLNELEFQLILDLSKTIYLQFENLMKTLIENEIELDI
FT                 SIYKQRLLNKKNKLFQKLEIHSQIEQLNLIQNPSYKLSQQKYYNMIKEFFD
FT                 ISMMHLPSTNKIYDQRLLSFSLLLDTKYFLQYSNNFPCEMFKILKNLFKKH
FT                 FDFVRLKNELMVVYKTKDLYKENIITFHDYLLYHSLMLVFPEVYKLTLLTM
FT                 TMFENHSFIKTLTCPIFTDVKNYFEKNTTLNKFNNLLYLIIEKKLVHELWM
FT                 KELLYSEVIDQLSQYDHKLGLVYR"
XX
SQ   Sequence 2743 BP; 1022 A; 383 C; 440 G; 898 T; 0 other;
     ggccagggat tgttcagctc agacccccac cacgatcata atgacgtaag gtgtggcttt        60
     ctgcagttcg gagcacactt aaaggaagtt ttctgctgat tttgggtaaa atcatcaatt       120
     attttttaaa tgattatcat taaaatcaag tgactacctt acacagttaa taatttatta       180
     aatagtattt gcaaagttca caggggaaaa tgactgaaat ggaaaacagt gtcaagaatg       240
     atgtgcctgt tgaaagatgt acagctccag ataacttagc tttaccgtca accatagtcg       300
     aagatcacct gcaacctcta tactctgtgg aagttgaaag cacaccctgc gattggctgg       360
     ccacctcgca gatcctgtta gaagaaagta acatggaacc gtacaatgaa gttctgttgc       420
     aagtatccga acaataccaa gtgaatgaag acgaggaaat catagaaaaa ctgctagata       480
     aagggttcag ccattttacc agagctgaga aattggagat tatcaagtgt aggccaacgc       540
     caagcctgcg tctgaactgt gcgcacaagt ataaaacagc taggaatttc cacgtgagat       600
     ggtatgataa gtttaaatgg ttgtgcggaa gtgcgaaaaa ggataaaatg tactgttggc       660
     cctgtctatt gttcagcaac gtaagatatc acaaaaactg gaacgaactg ggacaaaata       720
     atctgacaaa tatacacact tcgttcagac agcatgaaag ctcaaagtct catatagttg       780
     catacatgaa aatgttgaaa tttaatcggg taaaatatga atttagaatg gacgcccctt       840
     tttgtgaaaa tgcggacagt tacaatgaga ttgtgaaaaa gaatcgatat ataatcaaat       900
     gccttgttga taccatttgt tctgacaggt tacaatcgct aatcagactg gataactgca       960
     ataattgcgc gcaactactt agtgagttag caaagaatga ttgtaaattg agagattatc      1020
     taaattctac aaatatttta gtgaatttaa cggataaaat tttgtgcgat ataatcacaa      1080
     gtattagtaa ggctatcttt gtaaagataa aatacgaact agaggatact agatattgtg      1140
     cattgtttat tgaaagaata gaagataaaa atgaaaacgt ttatctaata ataatttgtc      1200
     gttttataaa caaacttaga attgtacagc atagattaat atcatttctt gaagtaagta      1260
     aatatccata ttctaacgat ctgttgcagg cttttctaat tatcatccat gatcttggat      1320
     gctgcgagaa actcatatca attgcttatg atagaagcct atttagtaga gattttacca      1380
     atcaatttga gattgcaatt agaaaactgt gtaaacatgt gctattaatt gactacactc      1440
     caccaaatgc agcaattaat gtgttcaact ctattaaatc aacaaaagct ggtaaattat      1500
     tttttataaa attatctggt ttaacatttc tattgactag ttcaaaatat gataggaatc      1560
     tttctgagta tattgaaaga tttctacccg actttaattc taatgaatgg acatatccaa      1620
     aaaatgtgtt gagtttagca aaacaacaaa gtgaaatact gtcattaatt gagcatataa      1680
     ctaaaaatgc tgaactttat ctttcacaaa cttatttaca agctttagga ttaaaagttt      1740
     gtctaaatga actagagttt cagttgattt tagatttatc taaaacaatc tatttacaat      1800
     ttgaaaattt aatgaaaaca ttgatagaaa atgaaattga actagatatt tctatttaca      1860
     aacaacgttt attaaataaa aaaaataaac tattccagaa gttggaaata cattcccaaa      1920
     tagaacagtt aaatttgatc caaaatccta gttataaact atctcaacaa aaatactata      1980
     atatgataaa ggaatttttt gatatttcaa tgatgcatct accaagtaca aacaaaatat      2040
     atgatcaaag attattatca ttttctttat tgttagatac taaatatttt ttacaatatt      2100
     ccaacaattt cccatgtgaa atgtttaaga ttttaaaaaa tctttttaaa aaacattttg      2160
     attttgtacg attaaaaaat gaactaatgg ttgtgtataa aacaaaagat ttgtataaag      2220
     aaaatataat aactttccac gattacctat tatatcatag tttaatgcta gtttttccag      2280
     aagtttataa actaacattg ttaaccatga ctatgtttga aaatcatagt tttattaaga      2340
     ctttaacttg tccaattttt actgatgtta aaaattattt tgaaaaaaac acaacgttga      2400
     ataagtttaa caatttattg tatttaatta ttgaaaagaa attagttcat gagttgtgga      2460
     tgaaagagtt actgtacagc gaggtgatag accagctgtc acaatatgat cataaacttg      2520
     gtctcgtcta taggtagaat ctgggggcac ttacagagag taatttgcct tttttttact      2580
     gacattatga ataatgtcta ttaagtttta attgaaaatt tattcttaaa atttaaagaa      2640
     atctagatga atttaagtca tgcatagaaa atatacaatt ttttttgtac aggaaaaatg      2700
     gcaaaataaa tattttttta aatacttttt ttttgctttt taa                        2743
//
ID   hAT-7N1_DTa repbase;    DNA;    INV; 650 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-7N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-650
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6153-6153 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 650 BP; 246 A; 102 C; 108 G; 194 T; 0 other;
     cagggttcgt aaacatcact cattttaaat atccctcaaa aacaagccga ctgtgatgaa        60
     aataaatata tatcaatcac gatacaaaca aattgtcatc tttgctcatt caaatacata       120
     tcgctcactg atcgaaaaat attcatcatg agtgaggaaa ataaaatgat gaaaaagtga       180
     gggaaaaaaa tatccctcac gagtgatgaa atgatcattg acaatatagt caaagacaaa       240
     tagcaccgac aactcaaaag cgtgttcaat ttacaatggg cagaaataaa gtatttgatc       300
     catagtcggt ggtagactta gcagaagata caaaagatgt aacctgcgtt taaaaacata       360
     taaattgctt attaaagtct agataataca aagaaaaact tttataaaac ttggtgttag       420
     tagccttatt ttggttatat tttcctcatt ttttcctcac aaaatgtcaa aaatgaggaa       480
     aatgttttga ggagaaagca gtataaagca gttgtgattt ttgtcagaaa aatattcatc       540
     agccctgctt ggttactcct cattttattg tgacaaatat caccgcccta tgttgaaatt       600
     attttgtttg agcaaaatga cagattgtga gggatatttt acgaaccctg                  650
//
ID   hAT-7N1_LMi repbase;    DNA;    INV; 1005 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; hAT-7N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1005
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2920-2920 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 1005 BP; 266 A; 251 C; 234 G; 254 T; 0 other;
     cagggctggg caaatgccgt ttcgcgagcg cgagcgctct cagcggctca cgcggcctgc        60
     tcgcggctcc ccccccccca gccagcagtg ccccccccac tcacactcga ctagccgcgc       120
     acctcactac accacgcgga accactcgtt ctgtttactt gtggaaatcg cgtccggtgt       180
     tcgtgataaa gcagaactag tgtctgaaaa atggctgagg aggacgtaaa atctttgaaa       240
     agaaagtctt ctgaacaccc acagtgggaa gaagagtact tttttgttgg aacgcaaagc       300
     ggacctcagt gtttgttttg caattcaaca ttgtcttcat ggaagaagta caatgtgaag       360
     cgtcattttc aactgcttca cgaaaaagat gtagttagtt tgagtaaaga agaacgaaaa       420
     gtcaaactta tagaaatgaa gcagaaaaag gagaaagacg taagtatact tgtagataat       480
     tatgttatta attcaattta ctgctgttat taatatgttg tgtgcatttt ccgtcaattt       540
     taccttctcc tgtacgtatt tacaggtaga aaaccttcta atccacaacg ctgcagcgat       600
     gagagtaagc tatcatgtag ctcttaaaat agctaaaact gcgcggccct tcagcgatgc       660
     agaatttgtg aaagaatgtt ttgttgctgc cgcaacaatt ttgtgcccag caaatcttcc       720
     tctttttgaa accgttcctc tttcacggag aacggttagc aggcgcattg aagaaatggc       780
     aaacgacgtg gaagctcagt tgagagacag gatcaaagat ttagttttct tttctttagc       840
     attggatgaa agcactgatg tatgtgcact gtgcatcagc aagcggccag ccacaccgca       900
     cagccctgct acccgcactg ctggctctca aggccgctca gcgctgccct cgcggctctc       960
     gctgctcgcg ggcagccgcg cgagcagctc tcgtgcccac ccctg                      1005
//
ID   hAT-7_AP    repbase;    DNA;    INV; 2951 BP.
XX
AC   Contig56589;
XX
DT   20-AUG-2009 (Rel. 14.08, Created)
DT   20-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-7_AP.
XX
NM   hAT-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2951
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1791-1791 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(317..874,909..2714)
FT                 /product="hAT-7_AP_1p"
FT                 /translation="MPRLQIYLIGPMNNQITGSKLPSKRDCLSVLFYNMRL
FT                 VNLNLHDSSRLVIDECSIFWKKARIPTHDNSDCIKKLKKLYEEWRKLDKNK
FT                 TRTTELQKTHENKFEEQLDNLFDISHANALNLIKIEEDKQFLFRQREKGRP
FT                 GCMLGTDMKLAGIEKRKATLKENEDGRKKRREMETLKLTGKLLNIENYYNL
FT                 FLNNDFLERIRLYSSSSSEDQDNTLLEEVLNETPGCSLPMPSSSNPIRAKK
FT                 SIMTSRLSAALDKCKISDRDAVHLLTAAAESFQVNCLEFTINRSTIKRARE
FT                 NFRKQSSEAIKSTFIDQNLNYVIVHWDSKLLPDILSKENIDRLPVIVSASN
FT                 VEKLLGVPALTSGTGEKISSAVHNLLLDWNLVDKVQAFVFDTTASNSGRLN
FT                 GACVLLEQLLNRDILFFACRHHIFEIVLQAVFAHVKITVMNGPDIPLFKRF
FT                 KNHWKNIDLSNFRIFSTFQHSHTNLKDVANNISLFCIQRLNDNFPRDDYRE
FT                 FLELVLIFLGGSPPRGIKFRQPGAYHLARWMAKAIYCIKILLFSDQFKITT
FT                 REQNSLDEVCCFIVKCYIQEWITAPNPVTAPMNDLLFLKKLKNYNGKLGEV
FT                 AIRKFINHLWYLNEECAVFSIFDDRVNNETKQRMAKYILEGKEQYSNNSEE
FT                 ENEESKKKLNLKFDDLTHFLNKDHPFDLLTNKSWKLFERFQISDIFLRAHP
FT                 STWKDIEEYRQAKEVISSLKIVNDAAERGVKLMEEYNQKFSKNEEQKQFTL
FT                 QVNIKNQSNLQSKMPNNSIYFSGCSRISQNIFRLQS*"
XX
SQ   Sequence 2951 BP; 1120 A; 387 C; 455 G; 989 T; 0 other;
     aggcaaaaat attggtttta cggtttttaa aatatatttt acgaacggtt gaagatacgt        60
     tcaaatattt attattatat taaaaataat gtgaaattac cgtcatcgtt atcaaaagta       120
     gataaaactc cgatagcgat aaaataaaac ttaataacag ttatgaatta tacagataaa       180
     caatataata gttataaaag gacattttat attttagttg ttgtatttca cttgaacgtt       240
     tcgcgttttt atagttttat agtgattatt ttaagttata atttatacgt tactgtttca       300
     aaatttattt tacaaaatgc ctagactaca aatttattta attggaccca tgaataatca       360
     aataactggt tcgaaattgc cttccaagag ggactgtttg tctgttttat tttataatat       420
     gcgcttagta aaccttaatt tacatgatag ttcacgcttg gttattgatg aatgttcaat       480
     tttttggaag aaagctcgaa ttccaacaca tgataactca gattgcatta agaaactgaa       540
     aaaattatat gaagaatgga gaaaattaga caaaaataaa acacgaacaa cagaattaca       600
     aaaaacacat gaaaacaaat tcgaagaaca attagataat ttatttgata tatcccacgc       660
     caatgcctta aatttaatta aaatagaaga agataagcaa tttttattta gacaacgaga       720
     gaaaggtcgt cctggttgta tgcttggtac ggatatgaaa ttagcgggca ttgaaaaacg       780
     taaagcaact cttaaagaaa atgaagatgg gcgaaaaaaa cgacgagaaa tggaaacctt       840
     aaaattgacc ggtaagttat taaatataga aaattaaatt gtatacatat tttcttaatt       900
     ttgattagta ttataattta tttttaaata atgatttttt agaaagaatt cgactttaca       960
     gttcatctag ttctgaagat caagataata cacttttaga ggaagtttta aatgaaactc      1020
     caggttgctc attaccaatg cctagttctt caaatccaat acgggctaaa aaaagtatta      1080
     tgacatctcg cttatcagca gctttagata aatgcaaaat tagtgatcgg gatgcagtgc      1140
     atttattaac agctgcggcc gaaagttttc aggtaaattg tttggaattt acaataaata      1200
     gatcaactat taaacgagcc cgtgaaaatt ttcgtaagca gtcatctgaa gctattaaat      1260
     caacatttat tgatcaaaat ttaaattatg taattgtaca ctgggattct aaactattgc      1320
     ctgatatatt aagtaaagaa aatatagata gacttcctgt aattgtatca gcttcgaatg      1380
     tagaaaaact tttaggggtt cctgctctaa cttcaggtac tggagaaaaa atatcttcgg      1440
     cagtgcacaa tttattatta gattggaatt tggtggataa agttcaggcg tttgtgtttg      1500
     ataccacagc aagtaatagt ggtcgtctta atggggcatg tgttctttta gaacaattat      1560
     taaaccgtga tattttattt ttcgcatgtc gtcatcatat atttgagata gttttgcaag      1620
     ctgtatttgc tcatgtgaaa attactgtta tgaatggccc tgacatacct ttatttaaac      1680
     ggtttaaaaa tcactggaaa aatatagatt taagcaattt tagaatattt tctacttttc      1740
     aacattcgca tacaaatttg aaagacgttg caaataacat atctttattt tgtatacaaa      1800
     gattaaacga taattttccg agagatgact acagagaatt tcttgaactg gttttaatat      1860
     ttctaggagg ttcacctcct cgtggaatta aatttcggca accaggtgct tatcacttgg      1920
     cacgatggat ggcaaaagcc atttattgta ttaaaatttt attattcagt gatcaattta      1980
     aaattactac tagagaacaa aactctcttg atgaagtttg ttgtttcata gttaaatgct      2040
     atattcaaga gtggatcacc gcaccaaatc cagttacagc accaatgaat gatttgttgt      2100
     ttttaaaaaa actaaaaaac tacaatggta aattaggaga agtcgccata agaaaattta      2160
     ttaaccattt atggtatttg aacgaggaat gtgccgtgtt ttctatattt gacgatcgtg      2220
     ttaacaatga aacaaaacaa cgtatggcaa aatacatttt agaagggaaa gaacaatata      2280
     gtaataacag tgaagaagaa aatgaagaat cgaaaaaaaa attaaattta aagtttgatg      2340
     acttaactca ttttttaaat aaagatcatc catttgattt attaactaat aaatcgtgga      2400
     aactatttga acggtttcaa atttctgata tatttttacg agcacaccca agtacatgga      2460
     aagacataga agaatataga caagctaaag aagttatatc gtcattaaaa attgttaatg      2520
     atgcagcaga aagaggtgtt aagttgatgg aggaatataa tcaaaaattt tctaaaaatg      2580
     aagaacagaa acaatttact ttacaagtaa atataaaaaa tcaatcaaat cttcaatcaa      2640
     aaatgcctaa taattcaata tatttttcag gttgttcaag aatatcgcaa aacattttcc      2700
     ggctgcagtc gtgaagtctt aaaaaaaaat tttgaatatt aatagtatta actataattt      2760
     gtataatatt cttataactt aactgagtaa tttaactgca acaacaaaac tgttgattcg      2820
     atactatttt cacccataac attatttgta gaaaaatcaa ttgtatttaa ttagtttatc      2880
     aaacattttt ttcatacctt caaccgttca taaaatagat ttaaaaaacc gtaaatccaa      2940
     tatttttgcc t                                                           2951
//
ID   hAT-7_DBp   repbase;    DNA;    INV; 2681 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-7_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2681
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 612-612 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Partial sequence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2681 BP; 874 A; 466 C; 519 G; 819 T; 3 other;
     agtgatgagt aaaaatcaac tcattttgcc gtacgcatca ttccgatcat cttgtgtcct        60
     cggttcaaaa tttctcaatc aattcaactc actgaacaaa aaacagtgat gagtgaaaat       120
     caactcattt tgccgtacgc atcattccga tccaaaaaat gagcaggtgt atacgaaagc       180
     atcaatggga tcaacttgag ttgagtgtgg atgactaaac gattagcgac aagacgacac       240
     aatgtgagcg ttacgactgc atgtacaata acaatttcta tgccagcttc ttgtagttta       300
     gcttgtagtt tgtagcttgt tctttttttt ttttggtcaa attcttcgtt ttgcttcata       360
     wtacatttta gtacttcata attagttgca ttttgttact tgattgatat ggagggtatc       420
     attgaaaaaa ttcgcgcaaa tgaataccaa ttggctgccc gacataaggg tagaagtaat       480
     atttggaaca tattgacaga aattgttaag gaggatggcg ttgttctgga tggtttttta       540
     tattgccgat cttgtcatga tcttgtgaaa tactcaccga aacagacttc aaatttaagc       600
     cgacacaaat gctgcaagtt gcttaaagag tcaaaattgt tgactacagc gaaaccagag       660
     gacaaaaaag atgctattga cgcatgtgtg gaatgggtga cacaggactg ccgacccttt       720
     tcatcaatta atggcaatgg atttaggaac atggcaaagt ttctagtcaa tattggtgga       780
     aggtataagg aaggagttga tcttgatgac ctgctgcctg atgcaacgac ggtgtctcga       840
     gctacgcaaa agttggcgga tgagaaaaaa aacatgatta aagatgagat agatccgaag       900
     ttgctaatag tggtggagca actgccacag ttgacttgtg gacggacagt tacgttcatc       960
     gcaactttct tggtgtcacc ttgcactacc aaaaagattt waaattggta gatctcatct      1020
     taggtgttaa gtcaatggac ttcgagcgtt caactagcac aaatgtttta aacaagttga      1080
     acactttgtt tgctgaattc ggcatatata atttggacca aatgaagttc gttaccgatc      1140
     gaggcacaaa tatcgtcaaa gctttgcaga ataatattag gttaaactgc agcagccatt      1200
     tgcttgccaa cgttttggag aattcgttta aggaatctaa agaagttgct gaattagtag      1260
     aaatgtgcaa aaaaattgtc aaatatttta agaaagctaa tttacaacat catctacaaa      1320
     catctgtaaa aaatcaatgc ccaacaagat ggaattcgaa tttcacaatg tttaagtcta      1380
     ttgtggacaa ttggttcaac attaatgaaa ttctaataga aaaacaagaa agtcagcgat      1440
     tgttgcttat aaacatatca acsctaaaac aattggtaga cttatgtagc gatttcgaaa      1500
     taatttttaa gaagcttcaa ttctgcagtt ctccatccct gtgttttgtg ataccttcaa      1560
     ttgaaaaaat gaggcatatt tgcgcgccac aagaggaaga tgtaccggca ctggtaacat      1620
     taaaagaaaa gatatgtaat aacgttaatg aaatttggat tccaaatatt tgtgtgtggc      1680
     ataaagctgc ttgttttttg tttccacctg cgttacaaat gcagcctaac gatcaagacg      1740
     caatacaaaa attttgcatt tcacaaatta agaacttgga cgttccatca actagttctg      1800
     ctcaaattag cccaagcaca ccaaacggcg atttctcaga attttcattt gaaagctcaa      1860
     ctttttcaac aagtacccaa gcagacaagg atcagaatgt ttcttttttt ccccaaccta      1920
     attaaaaagt ccactctgaa tagcttgaaa acacctgaag atgagctgga aagctattgt      1980
     aaagaaatgg ttgatatagg agatgacttt gatgttttaa aatggtggaa ggataaagat      2040
     cagacatatc acagactctc aaaattcgca cttaaagtcc actcaatgcc ggcaagtagt      2100
     gctgctgcag agcgcggatt ttctttggct ggaaacgtca ttactgaaaa gaggaaccgt      2160
     ctttgcccaa aatctgtcga cagcataata tttttaaact cgtattataa agcatttgac      2220
     cattgattct gtttttcgat cctttaatat aatttcttaa tatatttaaa atcaaaatta      2280
     aaacatgaaa ataaacgctt tgttgtaaaa tcattttcat tgtgttgcat ttcaccttct      2340
     tcttcacaca tttcatctgt gcaaaaaaag ttcagtttgc gtgaatgagt aaaatcatat      2400
     ttccatgagt aaaatcattc gtgttgattt ttgtgagttg agtgctattc ttgttcaaaa      2460
     aaatgattgt tgaaccgaat gagtagcgcc cgaaatcatt atgctgaaca cgagccgaac      2520
     aatttggagt gacacaaaaa atcgctcgca cctgagtgga tttaaaatct ataacgaaaa      2580
     tgtgagcgca tgcaagtttg attggctgat ccgaacagtg cgattattcg gctgttgagc      2640
     gcgtacgaat ttttttcatt cacccgaatc cgttctctgg t                          2681
//
ID   hAT-7_DTa   repbase;    DNA;    INV; 2422 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2422
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6184-6184 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 2422 BP; 888 A; 391 C; 421 G; 719 T; 3 other;
     cagggttcgt aaatatcact cattttaaat atccctcaaa aacaagccga ctgtgatgaa        60
     aataaataaa tatcaatcac gatacaaaca aattgtcatc tttgctcatt caaatacata       120
     tcgctcactg atcgaaaaat atttatcatg agtgaggaaa ataaaatgat gaaaaaaatg       180
     agggaaaaaa atatccctca cgagtgatga attgatcatt gaaaataatg tcaaagcaac       240
     gacaactgat ataatgggac gaaataagga atttgattca cagtctgtgg tagaattaac       300
     ggacgatcca aaagtagtaa catgcgttta ctgcaataaa tcgatgtcaa accattcagg       360
     taatataaaa aggcatttta agttacaaca tgaagtagaa tataacgaag cagaaagtaa       420
     tgaccgagtg agtattacaa tttttcagaa ggagaactta tttcaatgta gttttgcagt       480
     taaagggatc tttaaaaaaa ccacggaaac ttacttcggc tgtactaaaa tcaactaaaa       540
     atgagtatct tatcaatatt acaaaattag tggcctctgc cggaatgcca tttcgaattt       600
     ttgataacgc agcatttcaa aacattttac agccttggtc tgatgcctat gtctgccctt       660
     ttaattcaag aagcatatgt atacatatat ctcaagcagc aaagaaggtt aaagaatgta       720
     ttgtcggaca tattaaaagt aaaatggttt gcctgaaaat ggatattgca tcaaaaaatg       780
     accggagtat tatgggagta aatattcagt tattagacga atttaaagta attgtataca       840
     ccattggcat gattcaactg gaaggacgtc acactgcaga atacttgaaa acagaaataa       900
     ttaattgttt aaaaaagttc gaaattaata ttaataacat ttattcaatg acaacagaca       960
     acggtgccaa cgtcgtaaaa accgccaaaa ttttaaaaga atttgaagaa gctggcttgt      1020
     tagatgagga aaactgtgat aactttctgg acatagaaaa aaatttaaaa agttccctaa      1080
     gcgtagtaca ttgcgctgca catacactac aattagcttc ttgggatgtg atcaaaacaa      1140
     ttgaagaaaa tttggatgaa tgcagaaaac aagttaaawa acttcgaacc gatttccgta      1200
     ggcagaacga gcctcttcct attctggaca acaacactcg ttggagttca acatacaata      1260
     tgataaagtc gttgaaatta gctagaacaa gaatagatcc acgtatttat tcaatcaact      1320
     gggacttcgt agacgaattt tatttttcat tcaaaccaat tgctgaatgc actacaatgt      1380
     tgcagtctac tgaaatggtt tttggcgatt tttaccgaga atggcttctt tgcgaagctc      1440
     atcttaacaa gctcggaaat gatttwaact tggctaaaaa attacaatca tccttatcaa      1500
     aaaggaagac gattttatta gakaatgacg catttattta agccatttat ttagacccca      1560
     gattttccta taaaggatcc aaatttttaa acgaagaaca aaaaaggatt gccactgtaa      1620
     gttagtaata acaaatgtaa gtaatttaag taattaaagt tttactctca gaaaaaattg      1680
     ctgtctattt ataacaattt aatgaatacc aaaagtgatg ccgaaagttc aacaacggag      1740
     gaatttccag aaacttcatc aagttccagg ttcaacattt taaaatgcga cccgaacctc      1800
     ttcagtcaaa ataatgaccg cttaattgaa acccagatat ctaattttca atacggagat      1860
     caaatggaga tcgacgggaa tgttctagaa tattggaaac gattttcggt tacgaaccca      1920
     ataattggaa aagttgctga agtagctttg tctgtcccgg cgacccaggt atctgtcgag      1980
     agagcattca gttctctgcc ccatatattt acccggctaa ggactcggct gagccaaaaa      2040
     tctttagaaa atattttgat tttaagacta aattctgaag tgcttaaaaa tgttgagttt      2100
     gacgaaggga caaacatatg aaatgtataa taaagtctag aacttgtttt gtcttgcttt      2160
     ctagaactta aagtaatcga acttggtttt agaagccttt ttttgttttt attttcctca      2220
     tttttccctc acaaaatgtc aaaaatgagg gaaatgtttt gaggagaaag cagcataaag      2280
     cagttgggat ttttatcaga aaaatattta tcagccctgc ttggttactc ctcatttaat      2340
     tgtgacaagt atcaccgccc taggttgaca tttttttatt ttaacaaaat gacagatttt      2400
     gagggatatt ttacgaaccc tg                                               2422
//
ID   hAT-7_LMi   repbase;    DNA;    INV; 3207 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3207
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3032-3032 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(212..511,477..1535,1522..2118)
FT                 /product="hAT-7_LMi_1p"
FT                 /translation="MAEEDVKSLKRKSSEHPQWEEEYFFVGTQSGPQCLFC
FT                 NSTLSSWKKYNVKRHFQLLHEKDVVSLSKEERKVKLIEMKQKKEKDVSILV
FT                 DNYVINSIYCCYIIMLLIQFTAVINMLCAFSVNFTFSCTYLQEENLLIHNA
FT                 AAMRVSYHVALKIAKTARPFSDAEFVKECFVAAATILCPANLPLFETVPLS
FT                 RRTVSRRIEEMANDVEAQLRDRIKDLVFFSLALDESTDVCDVAQLAVFLRG
FT                 VDGQFNVVEELLDLVPMHYTTTADDIFSCLENIIEKYELCWEKLSSIATDG
FT                 APAMIGHKSGVVALIRKKLKAVGVQQEIPAIHCVLHRVNLLAKCAKLVGVM
FT                 DVVIKTINILRSHGLGHRQFKSFLADLECEYGDVPYFCDVRWLSRGVVLER
FT                 FFNLRKEIALFMDAKGKPVKELDDSQWILDLAFLTDLTKHLNSLNVALQGK
FT                 NKVISDSFSVTVFDTILAFKRKLLLWEKQLSEMSSVHFPSVALIVSENNLE
FT                 KERLKEHFDEFLTVLQSLEENFDSRFEDLNRLESDFNLFATPFAVNVENVS
FT                 SEIQLELIDFQCNRVLKEKFRTAENLESFYKYFPREQFPLLFKTAARVYSF
FT                 FGTTYLCESVFSIMKLTKSKLRSSLTDVHLTGAVRLMTSNFTPNIEMLVQN
FT                 HFK"
XX
SQ   Sequence 3207 BP; 886 A; 646 C; 672 G; 1002 T; 1 other;
     cagggctggg caaatgccgt ttcgcgagcg cgagcctctc agcggctcac acggcctgct        60
     cgcggctccc ccccactccg ccagccagca gtgcccccca ctcatactcg actagccgcg       120
     cacstcacta caccacgcgg aaccactcgt tctgtttact tgtggaaatc gcgtccggtg       180
     ttcgtgataa agcagaacta gtgtctgaaa aatggctgag gaggacgtaa aatctttgaa       240
     aagaaagtct tctgaacacc cacagtggga agaagagtac ttttttgttg gaacgcaaag       300
     cggacctcag tgtttgtttt gcaattcaac attgtcttca tggaagaagt acaatgtgaa       360
     gcgtcatttt caactgcttc acgaaaaaga tgtagttagt ttgagtaaag aagaacgaaa       420
     agtcaaactt atagaaatga agcagaaaaa ggagaaagac gtaagtatac ttgtagataa       480
     ttatgttatt aattcaattt actgctgtta ttaatatgtt gtgtgcattt tccgtcaatt       540
     ttaccttctc ctgtacgtat ttacaggaag aaaaccttct aatccacaac gctgcagcga       600
     tgagagtaag ctatcatgta gctcttaaaa tagctaaaac tgcgcggccc ttcagcgatg       660
     cagaatttgt gaaagaatgt tttgttgctg ccgcaacaat tttgtgccca gcaaatcttc       720
     ctctttttga aaccgttcct ctttcacgga gaacggttag caggcgcatt gaagaaatgg       780
     caaacgacgt ggaagctcag ttgagagaca ggatcaaaga tttagttttc ttttctttag       840
     cattggatga aagcactgat gtatgtgatg ttgctcaact tgcagtcttt ttgcgaggcg       900
     ttgatggtca gtttaatgtg gttgaggaac tcttagattt agtgcctatg cattacacaa       960
     caacggccga cgatatattt tcttgcttag aaaatataat agagaaatac gagctttgtt      1020
     gggaaaaact ttcatcgatt gcaacagatg gggctcctgc aatgattggt cacaagtctg      1080
     gagtggttgc tttgataaga aaaaagttga aagcagtcgg tgtccagcag gaaataccag      1140
     caatacattg cgttcttcat cgtgttaatt tgctagccaa atgtgccaaa ctagttggcg      1200
     tcatggatgt ggttataaag acaattaaca ttctcagatc gcacggtttg ggacatagac      1260
     aattcaaatc gttcctggca gatctcgagt gtgaatacgg tgatgttcca tatttttgtg      1320
     atgtacgctg gttgagtcga ggtgttgttt tagaacgatt ttttaattta cgtaaagaga      1380
     tagcattatt tatggatgcg aaaggaaaac cagtgaaaga actggacgac tcacagtgga      1440
     ttttagacct tgcgttttta actgacttaa cgaagcatct gaatagcttg aatgtagctt      1500
     tgcaaggtaa aaataaggta atcagtgaca gtttttgaca ctattttggc tttcaagaga      1560
     aaattgcttt tgtgggaaaa gcaactgtca gaaatgtcaa gtgtacactt cccgagcgtt      1620
     gcactaattg tcagtgaaaa caatttggag aaagagaggc tcaaagaaca ttttgatgag      1680
     tttctaacgg tgctacagtc tctcgaagaa aatttcgaca gtagatttga agacttaaat      1740
     cgacttgaaa gcgatttcaa cctttttgca actccttttg cagttaacgt ggaaaatgtt      1800
     tcttctgaaa ttcagttaga gctcattgac tttcaatgca atcgtgtgct gaaggagaag      1860
     tttcgcactg cagaaaactt ggaaagcttc tataaatatt ttccacgtga acagtttcca      1920
     ttgttattca aaacagctgc tcgtgtgtat agtttttttg gaacaacata cttgtgcgaa      1980
     agtgttttct ccataatgaa actgacaaaa tcgaagctta gaagtagtct gactgacgtt      2040
     catctgactg gtgcagtgcg cctaatgacc agcaatttca caccaaatat cgagatgttg      2100
     gttcaaaatc attttaaata aatccagaat gatgtaaatt aatgcttatt tcttttttgt      2160
     tcgtagtacc tctcctctga aatgacaatt cttttatgtg tatgtcacct tgttgtttat      2220
     cttgacagga aactgatagg ctttgcgatc atagagtttc ttccccttta tgttttctat      2280
     atatcatagg agttaagttt agttatccct tttacttcct ccagggagaa ggtttttgtt      2340
     ttacacttga taaattatac ttatcttaat agttcctagg tttttgcttc ccgcagcagg      2400
     gatattttat tttcctttag cttacaaatt ttcccatgta cttatttggt tattttttag      2460
     aagttcttta tcgtaccacg acaacttcgt tgtggtacca ctgacatagg cagggaactt      2520
     tttccattgc tctcaggtct tgagttctgg aattttttcc ccttcagaat ggtgtcagtt      2580
     ttcatccttt cctaaggatg taatgaacct taataattgt taccttctga ccgaccaccc      2640
     agtttctcgt cattgtaatg aagcaagttt ttagttgcag aaagttcagt tttgttacat      2700
     tttgttaaaa aaaatctaca caattctgtg aaaatataac gtaaaattta gaataaaaga      2760
     gtcttttctt aattctttac gtctatgtcc tatttgtggc cacgaaagta ggttttacag      2820
     tggttcgaaa ctgtgtttca tccttacatg agcaaccgtt gcatggtaca ggatacacaa      2880
     ttttcgggta agcactatta acacttactt cccactcaaa catgctgtgg cagatatgat      2940
     tgtaccggtg cccttttcac ggaagccgca tcagcttgaa acgacctcat gtgttttcta      3000
     cgtgcagtaa gtatttcagc ttgtccttac tcagcgccct cacagctgca cagttgcccc      3060
     cacccgtgca ctgtgcatca gcaagcggcc agccacaccg cacagctctg ctacccgcac      3120
     tgctggctct caaggccgct cagcgctgcc ctcgcggctc tcgctgctcg cgggcagctg      3180
     cgcgagcagc tctcgtgccc acccctg                                          3207
//
ID   hAT-7_RPr   repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   16-MAY-2018 (Rel. 23.05, Last updated, Version 2)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Mariner-25_RPr;
KW   hAT-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3272-3272 (2015).
XX
RN   [2]
RP   1-1288
RA   Bao W.;
RT   "Reclassified and renamed.";
RL   Direct Submission to Repbase Update (16-MAY-2018).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus. SINE2-1_RPr region is masked
CC   out.
CC   [2]: Classfication corrected and renamed it to be hAT-7_RPr.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..818
FT                 /product="hAT-7_RPr_1p"
FT                 /translation="MLLFSNNYFNLYIGNENVCKRRQLLTLQCIIYYYYCY
FT                 ISLYNFKKMLKTRQMKDPNNISACYNKSIREIKNTPPNKLPAPLVMAVGED
FT                 KESDDSPFDDDDDCINIFAPFAQKSANITEAWKTEIINYTKLDQAPVDVDI
FT                 LEWWKTLENSFKNLSRMAKDIFSICATSVPSERLFSQAAMIMTNRRSSLTS
FT                 DSVKALLCINAWAKCILKTKICGNIF"
XX
SQ   Sequence 1288 BP; 437 A; 209 C; 218 G; 424 T; 0 other;
     tagtgctgca cgagaccgag acgaggcgag actttatgca gtctcggtct cggtctcggt        60
     cgctcaagtc tcggtctcgg tctcgtcgag atatctcggt ctcggtctcg gttttttgaa       120
     tttttgttta agtattaaaa gcggtttgct attaataatc ttttcaaaaa atgttattat       180
     tttctaataa ttattttaat ttatatattg gtaatgaaaa tgtgtgtaaa agaagacaac       240
     tacttacact tcaatgcatc atatattact attactgtta tatatcttta tataatttca       300
     aaaagatgtt aaaaacgcgc caaatgaaag acccaaataa catatctgcc tgctataaca       360
     agtcgattcg tgaaataaaa aatacacctc ccaacaaact tcccgctcca ttagttatgg       420
     ctgttggtga agataaagaa tctgatgatt caccttttga cgacgacgac gactgcatca       480
     atatttttgc accatttgct caaaaatcag caaatatcac cgaagcatgg aagacagaaa       540
     taattaatta caccaaatta gaccaagcac cagtagacgt tgacatttta gaatggtgga       600
     aaacacttga gaattccttc aaaaatttgt ctagaatggc gaaagatatt tttagtatct       660
     gtgcaacttc agtgccatcg gaaagattat tttcgcaagc tgcgatgata atgaccaata       720
     gaagatcttc tctaacttct gactcagtaa aagctctttt atgtatcaat gcttgggcaa       780
     agtgtatctt aaaaacgaaa atttgtggca atatttttta ggtgcataga tagtcttttt       840
     tttcaaattc actaattcca aaattctaaa atataattca aataatatca aagttcaaag       900
     tattagatta ttaatagtga aatttatgaa attgaatgaa tgaatgatat gaatagtgaa       960
     atttagtgaa tttatgtaaa aattatgtaa ttcgaagggg gcatgtaatt cgaagtcaaa      1020
     tagatgtagt aatattgaac atatataata aaatcgtatc ttttaataat taattcaata      1080
     cccgtaatga ttatttatta ataaagaaca caattttata attttgtagc taaaaattaa      1140
     tatttgaaaa accgagacga gaccgagatt tctcgacgag atatatatca tgtctcgatc      1200
     tcggtctcgg tctcggttgc tcaagtctcg tctcggtctc ggtctcggta ccgagaccga      1260
     gatttgtctc gtttctcgtg cagcacta                                         1288
//
ID   hAT-8_AP    repbase;    DNA;    INV; 2875 BP.
XX
AC   Contig1007;
XX
DT   20-AUG-2009 (Rel. 14.08, Created)
DT   20-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-8_AP.
XX
NM   hAT-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2875
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1792-1792 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(250..2025,2278..2613)
FT                 /product="hAT-8_AP_1p"
FT                 /translation="MSAKLRSTKNGIFLVGDVQHQINGSKLPSNGQVLAVL
FT                 FYNIREVKLTINESANLAVRECVIFWEKARIPTKSLPNCVKKLVDLHQVWQ
FT                 GLQKNAKKTQDVFKQRQQAFTDSLNNLFDIAHADALQLIKIEEDKIFLKHQ
FT                 REPGRVGYLGGVDKKLSDKEKRAQLRATEEENRRMKYLSASNSLVSNEPVE
FT                 DDLFSISDENIDSPDNQQTTIENTQPETGAILRVPKKNFITSKLVAALDRC
FT                 QLSMRDSVFILQATIEALGYNTDEYPISKSSIQRIRTVKRKERAEAIKIDF
FT                 KNEVPDVVTVHWDGKLLPALNARNCKEERLPIVISFKNKEQLIAVPKLDGS
FT                 TGREQAQAVWNAIIDWDLEEKVQILCCDTTASNTGRLNGACILLEQKLDRE
FT                 LLIFACRHHIYELVLKSVFEIKISQVTTSPDIPLFKKFRENWKNVDPNMIQ
FT                 GYREKVEKFFTTSEIEALLTFYHAELTKKIVRDDYRELIELSVIFLNGDPD
FT                 RKLKIRPPGAMHQARWMARAIYSLKICLLSSQSKLTSKDKSSLLDVCIFIV
FT                 TCYVKPWLQCIIPIKSPNQDMCFLKSLKTYENVEKKHFKSGSTQIIFFIFS
FT                 EKNIYDFISAKSKYLFTRLKIDDNFLLESPSSWQTNTSFLKAKNAVSTLAV
FT                 VNDTAERGVKLMQDFHGLITVEEEQKQFLLRCVQEHRSIFPDCNKKTLKRK
FT                 YVQ*"
XX
SQ   Sequence 2875 BP; 1008 A; 481 C; 525 G; 861 T; 0 other;
     gggtgtccca gaaaattcaa tgtaattttt ttcatatgca taccctctta atttttttgt        60
     attgtatcaa aacactcata aatgaaattt catgaacttt tgaccacgat aagccgtgcc       120
     gactcgagta gtaacctgtc gttgcctgtc attacatgca ttatagacgt gcgcgcttat       180
     gaacgcagtt atgtgcgtat aatttccggt tgttcatgtt agtaagcata ttgtttttgg       240
     cgaatcaaca tgtcagccaa attacgcagt actaaaaacg gtatattttt agtaggagac       300
     gtacaacacc aaataaacgg gtcaaaactt ccctctaatg gacaagtact tgcagtattg       360
     ttttataata tccgtgaagt aaaattaact attaatgaaa gcgcgaatct cgctgttcgt       420
     gagtgtgtta tattttggga aaaggcgcga atcccaacca aatcgttacc taattgtgta       480
     aaaaaacttg ttgacttaca tcaagtttgg caaggcttac aaaaaaatgc aaaaaaaaca       540
     caagacgttt tcaaacagcg tcaacaagca tttacagaca gtttaaataa tttgtttgat       600
     attgcacacg ctgatgcctt acaattaatc aaaatagagg aagataaaat atttttaaag       660
     catcagagag agcctggtcg agttggttat ttgggtggag tggataagaa actgtcagac       720
     aaagaaaaaa gggcgcaact aagagcaacc gaagaagaaa atcggcgaat gaaatatctt       780
     tctgcttcaa attctctggt gtcgaatgaa cctgtagaag acgatttatt ttccatttct       840
     gatgaaaata tagattcacc agataatcag caaactacta tcgagaacac acaacctgag       900
     actggagcga ttctaagagt accaaaaaag aattttatta cttcaaaatt agtagctgca       960
     ttagacaggt gtcagttgag tatgcgagac tctgtgttta ttcttcaagc tactattgag      1020
     gcgcttgggt ataatacaga tgaatatccg ataagtaaat cttccatcca acgaatccgt      1080
     acggtaaaac gaaaagaacg agcggaagct ataaagattg attttaaaaa cgaagtacca      1140
     gacgttgtca ctgttcattg ggacggaaaa ttgttgcctg cactaaatgc tcgaaattgc      1200
     aaagaagaac gtcttcctat agttatttca tttaaaaata aagaacaact tattgctgtc      1260
     ccaaaattgg acggttctac aggaagagaa caggcacagg ctgtttggaa tgcaatcata      1320
     gactgggatc tcgaagaaaa agtacagatt ctttgttgtg atacgacagc ttcaaataca      1380
     ggtcgtctca atggcgcttg tattctccta gagcaaaaac tagacaggga attgcttatt      1440
     tttgcttgtc gccatcacat atatgagctg gtcctaaaat ccgtttttga aataaaaata      1500
     agtcaagtga ccacaagtcc tgatattccg ctcttcaaga agttcagaga aaattggaaa      1560
     aacgtcgatc ccaatatgat acaaggatat agagaaaaag tggaaaaatt ttttacaact      1620
     tctgaaatag aagcactgct tacattttat catgctgaat tgacaaaaaa aattgtcaga      1680
     gatgactatc gagagttgat agaactttca gttatatttt taaatggaga tcccgatcgg      1740
     aaattaaaaa tcaggcctcc gggtgccatg caccaagctc gatggatggc gagagcaatc      1800
     tattccctaa aaatatgttt gctaagttct cagtcaaaat taaccagtaa ggacaagtca      1860
     tctcttctag atgtctgcat atttattgta acttgctatg tcaagccttg gcttcaatgt      1920
     attataccaa taaaatcacc gaatcaagat atgtgttttc taaagtcttt aaaaacatac      1980
     gagaacgttg aaaaaaaaca tttcaaaagc ggctctacac aaatttagcc aacatttatg      2040
     gtatttgact gaagaagcag ctatcctggc actatttgac gatgaggtaa acgaagcaac      2100
     aaaaataaag attgtggaaa atttaacaaa tgaaaatata ttgaccactg ggaaacgata      2160
     catcccatca aaggacgaac tttgcggttc attgtacggt tagtatgaca tataaatatt      2220
     aatataataa tatgttagtt gtttttatta tagatatctt cagttatttc taactaaata      2280
     ttttttatct tttcagaaaa aaatatttat gactttatat cggccaagag caagtatttg      2340
     ttcactcgtc tcaaaattga tgataatttt ctcctcgagt ctccttcatc gtggcaaact      2400
     aatacttcat ttctcaaagc caaaaatgct gtgtcaaccc ttgcagttgt taacgatact      2460
     gccgaaaggg gtgttaagct gatgcaagac tttcatggtt taattacagt tgaagaagaa      2520
     caaaaacaat ttttattacg ttgtgtacaa gagcacagaa gcatttttcc cgactgtaat      2580
     aaaaaaactt tgaaaagaaa atatgttcaa taattaattt taaaattata ataaacgtaa      2640
     aatgtcaacc aattggtgtt ttatttttta aaacgtattc taattttaag gttttccata      2700
     gtgctgcagc ctaaattata tttgaaagtt tgacgttaag tcggcacggg ttctggtgat      2760
     cggaagtcga taatatttca taaatgagtt attaggacca aatgaaaaaa aattaggggg      2820
     tatgcgtacc taatttatca aaaaaaatat atccccctta tgtcatggga caccc           2875
//
ID   hAT-8_DBp   repbase;    DNA;    INV; 2613 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-8_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2613
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 613-613 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3'-end is uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(459..1223,1477..2379)
FT                 /product="hAT-8_DBp_1p"
FT                 /translation="NQIICNQDKTTESSFKEYAATLKSKLLAGELKPIGSR
FT                 GRSKVWDTFSRLVNTNGIVATDAVVCNICKNIYKFEKSTSNLVKHKCYIMA
FT                 NSRKRSHPVVDVPTDTKKKCTNLATEWTIKNGRPFNLISDSGLKTLAQFFI
FT                 SVGAKLGENVNIDSLLPHPTTISRNICALYDFHFNEVKIEINEHKQYGYSI
FT                 TSDIWTDDFFKESYISLTMHYVKEGTLKNRLLAVKSMGGASCTGKKYNIGK
FT                 YNNKIIIYVYMHIFKVWTKLKLNKHPKKLLSNSLEYIFNLLKSVELNWMEI
FT                 SQILVDKNEISRIQDINLNNISGMVKLLAPFEXCSKKLEGSNYPTLHLTVP
FT                 HINNLLKKISSPIQNDLEIVKKCKLKLLEYIDSIVIQNLKKFHNIALFLFP
FT                 PTNKLAKFSQLEKDQTFKQVEEMMINIHINSQNDDIEKLIQPTEVIDNIFA
FT                 DYSEPIQSTNILSDIQDELQTYKNVNKAYREDFDVLQWWSINKDRFPLLYQ
FT                 ISCKILAAPASSAASERAFSVAKNLICEKRAKIATSEDMVNKIMFLHYNIN
FT                 NLNIDNLIT"
XX
SQ   Sequence 2613 BP; 950 A; 438 C; 437 G; 785 T; 3 other;
     tagacttctg catgaatgta ctcatttgtg acataacaga tctgtacagt agtgtagtgt        60
     tttaaaaaca ctgcactcat tctatactgt acagtgtact ctataggtcg gaacaaagta       120
     gcacaacatt ttcagtgtac tcacttcgag tgagtacagt atatcgttgt acttgtcgtt       180
     agtgagtact aaatttgtgc cttttccaac acactgtaca gtttgtctgt tgacgtgtac       240
     aactatttga cgtgtacaaa tattttttca taaattcata aatatggatt ttaaggagaa       300
     cgacgctcgt gcaatgaact ctcaagatag cgtaagtttt tgtccaaata tatatgtttt       360
     gtaacaaagt ctatgtgttg ttttatatgt ttgtgattgt cttttgtatg tttgtggcta       420
     tttagtgcca gagaaccagg ttttaacaca tgtattaaaa ccaaattatt tgcaatcagg       480
     acaaaacaac ggaatcctct tttaaagagt acgctgccac gctaaaatcc aaattattag       540
     ctggtgagct taagcctatt ggttcacgtg gtcggagcaa agtgtgggac acattttcta       600
     gactggtcaa tacaaacggc atagtggcga ctgatgcagt agtgtgcaac atatgcaaaa       660
     acatttacaa atttgaaaaa agcacatcaa atttagtaaa acacaaatgc tacattatgg       720
     ccaatagccg aaagcgcagt catccagtcg ttgatgtacc cacagacacc aaaaagaagt       780
     gcacaaatct ggcaacggag tggacaataa agaatggtcg accgtttaat ttaatttcgg       840
     attctggttt aaaaaccttg gcacagtttt ttatttctgt cggtgcgaaa ctaggagaaa       900
     acgtcaatat tgactcatta ttgccgcatc ccacaactat atcgcgaaac atttgtgcgc       960
     tttatgattt tcactttaat gaagtgaaaa tcgaaattaa cgagcataaa caatacggat      1020
     atagcattac ttcggatatc tggacggacg atttctttaa ggaatcttac atttcactaa      1080
     caatgcatta tgtcaaagaa ggcactctta aaaaccgcct gctagcagta aaatcaatgg      1140
     gtggagcctc ttgtaccggt aagaagtata acattggaaa atataataac aaaataatta      1200
     tatatgtata tatgcatata ttctaaaata tccaaatttc ttaggtaatg aaaaaaaaaa      1260
     acaaaataga gcgaatctta cgtgattttg gatgtcattt atgatggacg atccaataat      1320
     tgtaaccgac cgagagctaa tatgaaagca gctttcaacg gactgacaat acactgtgca      1380
     aatcacttaa tccacaatgt gatttgcaaa attgcgaatg aagtactaga attgcgcttt      1440
     gattaatcgc tgcagcaagc ttgttaaata ttttaaaaag tctggacaaa actgaaactt      1500
     aacaagcacc ctaaaaagct actgtccaac tcgttggaat acatatttaa cctcttgaag      1560
     tcggttgagc taaattggat ggaaatttcg cagattttgg tggataaaaa tgaaatttca      1620
     agaatccaag acataaattt aaataatatt agcggaatgg tcaagcttct tgcaccgttt      1680
     gaaatktgct ccaaaaagct ggagggaagc aattatccaa cattacactt aactgttcca      1740
     cacatcaata atttattaaa aaaaatatcc tcaccaatac aaaatgattt ggaaatagtc      1800
     aaaaaatgca aactaaagct tttagagtac atagattcga tagttataca aaatcttaaa      1860
     aaatttcaca acattgccct gtttttgttt ccacccacca acaaattagc taaattttca      1920
     caattagaaa aggaccaaac ttttaaacaa gtagaagaaa tgatgattaa tattcatata      1980
     aatagccaaa atgatgacat tgaaaaatta attcaaccta cggaagtcat agacaacata      2040
     tttgcagact attcagaacc tattcaaagc accaatattt tatcggatat tcaggatgag      2100
     cttcaaactt ataaaaatgt taataaagcg tatagggaag attttgatgt tctgcagtgg      2160
     tggtcaataa ataaagaccg ttttccgctg ctttatcaaa ttagctgcaa gatactagca      2220
     gctcccgcga gcagtgcagc atcggaaagg gcattttctg ttgccaaaaa tttaatttgc      2280
     gaaaaacggg cmaaaattgc cacatctgaa gacatggtca ataaaataat gttccttcat      2340
     tacaacatta ataatttaaa tatagataat ttaataacat aaaataatta ttgtaataag      2400
     cattcatttt aatattaata atttgtaaat acactatttt ataataaata catttgaaac      2460
     gaaaataaaa ataaattttt taatcagaca tacatatgtg catacataaa cacgagaaat      2520
     atttatgtgt atgttccagt catgaagttt ctctcactgt acagtaagtc aactgaacac      2580
     caaaacactg tamagtgagt tgactacggc aca                                   2613
//
ID   hAT-8_DTa   repbase;    DNA;    INV; 2271 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2271
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6246-6246 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(302..412,478..1305,1361..1858)
FT                 /product="hAT-8_DTa_1p"
FT                 /translation="MPNPNRKDNRLKWLEEFPTEKLVLLEEKIYCETCKKN
FT                 ITVVKKSQLQQHIQTILHIHNKKKTEKLDNHEGEDNFQFELCQAMVAANIP
FT                 FNALSNTTFNNFLEKYTKENIPSESTIRKNYLDRCYQHKMDEIKEHIGSNK
FT                 IWISIDETTDKAGRFIANLIVGTLTENERTTPYLIACKEIQKVDSSAISRF
FT                 VNSTLNSFWPNEMENKVMLLLTDAAAYMIKAGQHLKIFYPNIIHITCLAHA
FT                 LHRIAETVRLEFPDVNKFVSSVKKVFLKSPSRSKKYSESLDIMLPPEPVVT
FT                 RWGTWIEAVIFHANHFTGIKSVLESFDPNDADSIKVTRELLTNSDLQSNLM
FT                 FIRKYFEKLPNYISALEESGMTLKQGMEIVEKAKMLFQKVPGRIGKDIQEK
FT                 FRKVLHRNPDFTLIESINTSINNCTFSVPNITKENVVKYTNSPLTSCDVER
FT                 SFSAYKLIHSEKRQKLTPSNMEKLIIIYCKQNYN"
XX
SQ   Sequence 2271 BP; 860 A; 378 C; 358 G; 675 T; 0 other;
     tagacatcgg attttaggta aaaacatatt ttgaacgagc agtccaaaat ttttttggat        60
     tgcatacaaa tttgtttcat gtaacgtaga tcattttgaa ggcggcatat ttttgcaaat       120
     ttgacctttt tacatatctt ccacctaaaa gcatatttcg gaatatgtca accttttttg       180
     acctttttga cctttttttg ctttgaatat atgcctttaa gtaggcgaac tgaaattgat       240
     actgttaaag tcaaaataat ttcatagtcg tgtgccttgt gattgagaat ttaaacgaaa       300
     aatgccgaat cccaatagaa aggataatcg cctgaaatgg ttggaggaat ttccaacgga       360
     aaagctggta ctattggaag aaaaaatata ttgcgaaaca tgtaaaaaaa atgtaagtgt       420
     ttgtatttag ttctctttac ttgtttgctt ttatataaat gttttccact cccgaagatt       480
     actgtagtga agaaatcaca attacaacaa cacattcaaa ccattttaca tattcataat       540
     aagaagaaaa ctgaaaaact tgacaaccac gaaggggaag acaattttca gtttgaactg       600
     tgccaagcaa tggtagccgc taacatacca tttaatgcac ttagcaacac aacatttaac       660
     aactttttag aaaaatacac taaagaaaac attccgagcg aaagcacaat aagaaaaaat       720
     tatttggaca ggtgttacca acataaaatg gatgaaatca aagagcacat aggaagcaat       780
     aaaatatgga tctctataga tgaaacaacc gataaagccg gaagatttat tgcaaatctt       840
     atagtgggaa cactaactga aaacgaaaga actacgcctt acctaatagc ttgcaaggaa       900
     attcaaaaag tagatagttc ggcgatatca agatttgtaa atagtacatt gaacagtttt       960
     tggccaaatg aaatggagaa caaagtaatg ctgttattga cagatgctgc agcatatatg      1020
     attaaggcag gtcagcacct taaaatattt tatccaaaca taattcatat tacttgtttg      1080
     gcccacgctt tacatcgaat cgcggaaact gttcgattgg aattcccaga tgtgaacaag      1140
     tttgtgtcga gtgttaagaa agtatttcta aaatcaccat cccgatcgaa aaagtacagt      1200
     gagagtctgg atataatgct accacctgag ccagttgtta cgagatgggg aacatggatt      1260
     gaagctgtta tatttcacgc aaaccacttt acaggaataa aatcggtaag cattccaaaa      1320
     gcaagtcaat gtaaatacct aacaatttat tttggcccag gttctagagt ctttcgatcc      1380
     aaacgatgcg gactcgataa aagtaaccag ggagttgctt acaaattcgg accttcaatc      1440
     aaatttaatg tttattagga aatactttga aaaacttcca aattacataa gtgctctaga      1500
     ggaatcaggg atgacattaa aacaggggat ggaaatagtg gaaaaagcta aaatgttgtt      1560
     tcaaaaagtt ccaggaagaa ttggaaagga cattcaagaa aaatttcgaa aagtgttaca      1620
     tcgaaatcca gatttcaccc taattgaatc cattaacact tcgataaata attgtacatt      1680
     ctcagttccc aacattacaa aagaaaatgt cgttaaatat accaattcac cattgacatc      1740
     atgtgacgta gagcggagtt tttcagcata caaattaata cattcggaaa aaaggcagaa      1800
     acttactccg agtaacatgg aaaaacttat aattatatac tgtaaacaaa attataacta      1860
     actttctctt tacagtttat aaaatctaaa ttctacccaa ataacaaaac aaaaacaacc      1920
     aaaattatat gtaaaaacac aaaatttacc tccttgggcc aataaaaatt tttgtaatac      1980
     tttgtttccg tttaaaattt ttttaaataa accactgact cgtcattaat aaaagaagcc      2040
     atcttttcaa ttctatgagc gaaaaataaa accgaacctt ttttgacctt ttttgaccta      2100
     ttcaaatagg ttaaaatagt cttagcatat tccttaacct tctttgacct aaaaaaaggc      2160
     atatttttga tatgccacca tttactgaaa gcctgtattt ttataagtct attttaaaaa      2220
     tttcaaattt tttagaccac aaacaaaaaa aaacctaaaa tccgatgtct a               2271
//
ID   hAT-8_LMi   repbase;    DNA;    INV; 4019 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4019
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3033-3033 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1263..2270,2311..2493,2468..3046,2848..3618)
FT                 /product="hAT-8_LMi_1p"
FT                 /translation="MFNIEDNICVPRSSGPVMTTAAHTSQHASSISSHLDS
FT                 PDRSMLENISHDPGKYCDEILTEEVRDIWIHKGAEFFQNKNSDFSETTTHF
FT                 ADVSGKTKTRKLTRTVFTRKLTNGECVERKWLLYSPSMKSVYCYCCRLFNN
FT                 TVGNNLSSSRGYKDWKHINNLLKEHENSLRHRESMMNYVARSKIVGRVDTG
FT                 LLSQFNVEVNYRRSILKRIVAVVKFLASRGLGFRGENDILGSENNGNYLGC
FT                 LEFPFLADHIRKYGNRGKGNTSYLSANICNEFINVMGQKVLTTIVNELKAV
FT                 RYYSISVDSSPDLSHVDQLTFIVRYVKDGQPVERFFAIFAYGGADSFDISI
FT                 KDCRGQSYDNAANMAGKYSGLQARIKEKCEFAIFVPCATHSLNLVGVQAAA
FT                 GCFVFRRLQGVSEAVAYFQFVQKLSTFSSASNNRWKVLKECLGANKVLKSL
FT                 SETRWSARADALNALNNGYNDIFEALKSISSNTDQPVETRNEAQSLCKKMK
FT                 KLETILLTEIWDDLSRTINNTNVTLQSSTVTIDLQQNFLHLFPISSVLHAV
FT                 DSISMNLQPKRKIQVLTIRVIPKGREFAASISLFPKIRQRLSSYRHNRLAT
FT                 KLFASISDFISSARSRFDQYESSAKEKNPGADYKGNSQRTRICSKHITFSE
FT                 DSSETVQLSAKEAFRVEDFLPIIDTLDSCLKRRSEAYEKVSKHFSFLSQLK
FT                 QIDSEQLRNRCKKFAEFHHADVNADELISECFHLKQYLKKIPNESPELSIS
FT                 SLHSLIKADKIEETFPNVKVATRIFLCLMVTNCSGERSFSQLKRIKNELRT
FT                 TMLQERLTNLSIMCIESDTLQQLDFEDVIEDFAFQKSRKKPLTAT"
XX
SQ   Sequence 4019 BP; 1268 A; 770 C; 790 G; 1190 T; 1 other;
     cactaccgtc tctaccatag gggcacaagg ggcacagggc ccccagcctg atgggggccc        60
     cgagaaactc gttcctttct cctaggcaat gactttttta aagtgaattt ttgccgcact       120
     tattataaag acccagaaat tgtctcgaaa cgtgtcatat atggtgtggc aagtgacttg       180
     gttttcacaa gcacagtacc gttttttgtt cctttgaaca catctggtaa ataactgaat       240
     tgttacttat actaagattt caacgtgtat agatgggcat taaaaatgat ctgacatacc       300
     tgaaatctaa ctagtggaga aggtacttca cttaaaagac gtattttctc ttattccgag       360
     agaagtgact tcattgtggg acgctgcttg tcatgtggaa gttgcgtgtc agtctctcca       420
     caaacgtaag aactcttctt tttattccta ctttttctcc cactttcttt actcttctta       480
     tagtcccaag tgaaacgcca gtagcagctt gaactttatc aagggaactg ttttatgcga       540
     ttttatcctg tcttttacgt cttccgacat aaacttaatt gcgttataca caatatctcg       600
     tctctggtta tgcagaaccc ttcctgcacc aactggtgga gacagcaatg acgcgctatg       660
     tatgacagtt tcttttattt ttatttggct tcaggcagag cccatttaat cagatccaaa       720
     tctttaatat aaggaagcag aaatacatga acttcgataa ctagaagggt ctggagcaga       780
     ctggtgcgkc ctccccttag aacaaagtaa tggactcgcc cggcgcttag gacgacaatg       840
     cgcaacggcc tcccctacga agaaaccaat ggactcgccc ggtgcttagg acggcactgc       900
     gcatcggcca atgcatccag tcccggtgaa ttcggcattg ttggagtttc taccttacga       960
     agcgatagtt cgttatcggg gtgcttcgaa gcgccatttg attgtacgcg atttacgcga      1020
     ttcactctgt ttacttggca gtgactactt gatatttttg tagtgtcttt caacaatgtc      1080
     aaaaagaaca tacttaagtg gttcagaaaa aagaaaaaaa acttgcaatt caaaaagaaa      1140
     ccgtcagcag actacctaaa cttacttcat ttttcactgt tgaagaaact aacaggcaga      1200
     gtgattcatc tacctcatca tctcaagata tctctaaatc tcaaagctta gaaacggtgc      1260
     ccatgtttaa catagaggat aacatttgtg ttccgaggtc atcaggtcca gttatgacga      1320
     cagctgcaca cacatcacaa catgcttctt ccatctcaag ccacttggat tcaccggaca      1380
     gaagtatgtt agaaaacata tctcacgacc ctggtaagta ctgtgatgaa attttaacgg      1440
     aagaagtccg tgatatttgg attcacaagg gcgcagagtt tttccaaaac aaaaatagcg      1500
     acttctcaga aaccactaca cattttgctg atgtaagtgg taaaacaaaa accagaaaat      1560
     taactaggac tgttttcact cgcaaactga cgaatggtga gtgtgtagaa agaaagtggc      1620
     ttctgtattc accatccatg aaatctgtgt actgttattg ttgccgtcta ttcaataaca      1680
     ctgtcggcaa taatttgagt tcttccaggg gatacaaaga ttggaagcat ataaacaact      1740
     tattaaagga gcatgagaac agtttacgcc acagggaatc aatgatgaat tatgttgcaa      1800
     gaagcaaaat tgttggtcga gttgatactg gattgctttc ccagtttaat gttgaggtca      1860
     actataggag gagcatattg aaaagaattg ttgcagttgt gaaatttttg gcgtcaaggg      1920
     gactagggtt tcgtggagaa aatgatattt tggggtctga aaacaatgga aattatttgg      1980
     gatgcttaga atttcctttt cttgctgatc atatacgaaa gtatggcaat cgtggcaaag      2040
     gaaatacatc atatttgtct gcaaatattt gcaatgaatt tattaatgta atgggacaga      2100
     aagtgttaac gacgattgtc aacgaattaa aagcagtcag atactattca ataagcgtgg      2160
     attcctcgcc agatctctcc catgttgacc agctaacttt catcgttcgg tacgtaaaag      2220
     atggccagcc tgttgagaga ttttttgcaa tttttgccta tggaggagca tagggctcaa      2280
     agtatagaag atactgttat gaagttttag gatagctttg acatttcaat aaaagattgc      2340
     cgcggacaga gctatgataa tgcagcaaat atggctggaa agtattccgg tcttcaggca      2400
     agaataaaag aaaaatgtga atttgctatt tttgtaccat gtgccacaca ttcactaaat      2460
     ttagtaggtg ttcaggcggc tgcagggtgt ttctgaagca gtagcatact tccagtttgt      2520
     ccaaaaattg tccacctttt cttctgcttc gaacaatcgt tggaaagttt tgaaagaatg      2580
     tttaggtgca aataaagttc tgaagtccct ctctgaaacc agatggtctg ctcgtgctga      2640
     cgctcttaac gctttgaata atggctacaa tgatattttt gaagctttaa agtcaattag      2700
     tagcaacact gatcagccag tggaaacaag aaatgaagct caaagccttt gcaagaaaat      2760
     gaaaaaactc gagaccattc tcctaacgga gatatgggat gacctttcga gaactatcaa      2820
     caacacaaat gtaactttac aaagtagtac cgtcacaata gacttgcaac aaaacttttt      2880
     gcatctattt ccgatttcat cagttctgca cgcagtagat tcgatcagta tgaatcttca      2940
     gccaaagaga aaaatccagg tgctgactat aagggtaatt cccaaaggac gagaatttgc      3000
     agcaagcata tcactttttc cgaagattcg tcagagactg tccagctgag tgccaaagaa      3060
     gcatttcgtg tagaagattt tctgcctata atcgacacat tggattcttg tttgaagcga      3120
     cgttcagaag catacgagaa agttagcaaa cattttagtt tcctttctca gttaaaacaa      3180
     atcgattctg aacagttgag aaacaggtgc aaaaaatttg cagaatttca tcatgcagac      3240
     gttaatgctg atgaactcat atcagaatgt tttcatttaa aacaatattt gaaaaaaatt      3300
     ccaaatgaat ctccagagct aagtatatca tccttacatt ctttaataaa agcagataaa      3360
     atagaagaaa cctttccgaa tgtaaaagtt gctacccgga tatttctttg tctaatggta      3420
     accaattgca gtggagagcg ttcattttcc cagttaaaga gaatcaaaaa tgaattacga      3480
     acgactatgc tacaggaacg acttactaat ttgtcaatca tgtgcataga aagtgacacc      3540
     cttcaacagt tggactttga agacgtaata gaagattttg catttcagaa atcccgaaag      3600
     aaacctttaa cagcaacgta agtccaattt gcaaaacagt aatcactagt attttatttg      3660
     tgtatttcta accataataa ccaataaatt cactaaacaa atgtacatca ttctgatgag      3720
     ttcattcaaa ggaaaattct gttttgttgt agggtcccct aatctgtgtg ccagtcatct      3780
     gcatagaaag agacatactc caaaaatgta tattttgtat tctcgaaatc tttaaagaaa      3840
     tcattaattt gaatgaaaga ctaatttgtg gaactaatca ttagtatttg gtttgtaata      3900
     ttttaaccaa ttaagtcact aaataaatgt acaccattct gatgcattca tttagttttt      3960
     tttaagggcc ccaaaacact gagtgcccag gggcccctgc atggcttaag acggccctg       4019
//
ID   hAT-9_AP    repbase;    DNA;    INV; 987 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-9_AP.
XX
NM   hAT-9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-987
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(9), 2100-2100 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..774
FT                 /product="hAT-9_AP_1p"
FT                 /translation="MCIFNKYLIKYFKFYSKFDIHADFARSPTFLTNIIRP
FT                 NKTKYFILFILFNDNSIKNELSIILSNFQCITDTITCLEKSGVNLGKSLEL
FT                 VQNVENKLSEGGRGIEFAKVKLSEVLSKNPGLSQIKKISEIISGEIRNDDE
FT                 DLAELSPEDISCFKYAPIVSADVERSFSKYKVMLRDNRRSFQFDNLKAHFV
FT                 TSCWYSFNNY"
XX
SQ   Sequence 987 BP; 351 A; 129 C; 138 G; 368 T; 1 other;
     gggcccggat ttttatgcaa atgcatattc ttctacattt gacgtataat aattctgatt        60
     aaatatcttg atgtttcgta aaacgtagat tctactgtta attttttttt gcatattttt       120
     gcatatttgc atcaaaatgc ataataattg catatttcgg ggtaattaca taaaatgtgc       180
     atatttaata aatacttaat aaaatatttt aaattttact caaagtttga tatacatgcc       240
     gattttgccc gatcgccgac gttcctgaca aatataattc gaccgaataa aacaaaatat       300
     tttattttat ttatattatt taatgataac tcgatcaaaa atgaactttc gataattcta       360
     tcaaatttcc aatgcataac agacactatc acgtgtctag aaaaatcggg tgtcaatctt       420
     ggaaaaagtc tagaattggt tcaaaatgta gaaaataaat tgagtgaagg aggacgaggt       480
     attgaatttg ctaaagttaa actatcggaa gtattatcaa aaaatcccgg attatcacaa       540
     ataaaaaaaa tttctgaaat tataagcgga gaaataagaa acgatgatga agaccttgca       600
     gagttgtcac cagaagatat ttcttgtttc aaatacgcac ccattgtgtc agcagacgtg       660
     gaaagaagtt tttcgaaata caaggtgatg ctacgcgaca atcgtagaag ttttcaattt       720
     gataatttaa aagcacattt tgttacatca tgttggtact cattcaataa ttattaatta       780
     atacacattt ttatgcttta tacacatttt aaaaaatgat atttaaattg tatttttttt       840
     tcacttaata ctatattttt taattttttt taaattttga ttttttaaac aatanttttt       900
     tttgcatatt atttgcatat ttttgaattt ttgagtgcat atatatgtgc atatttaaca       960
     aaaatgtttg cataaaaatc cgggccc                                           987
//
ID   hAT-9_DBp   repbase;    DNA;    INV; 2827 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   hAT-type DNA transposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-9_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2827
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 614-614 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. ~350-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..2144
FT                 /product="hAT-9_DBp_1p"
FT                 /translation="MSLTNKSFNIFKYFEEGDNGLVKCKTCFRMLKKDRAF
FT                 NLKKHLMLHDIRPEQKENDSSGMQPKKIVKHQQIKVQINKKQLIRSYIGLV
FT                 TENSVPFNVLNSDNMRNIIDPICQGLKEKSGKNFSLNGTKCKSVLRQVAEK
FT                 IRQEIHNECKHRILSLKIDSATRLDRNIFGVSAQFISSDEIKSRVLGMVEL
FT                 RGAGSSSAKNLAKEILSVLDKYGISLSQIVSITSDNGANMIKTTKILSEMN
FT                 LSEDDMEDAGIQENVEYIKQIELFGKTETALVGDIQICRCAAHTGQLCALD
FT                 VTKNANIREYLLMCRNLTKHIRKHRDLFELKNFKLPQLDCPTRWGSTYNMV
FT                 DQLSKAKSILSLIETVENKSRDDDFIVNEMLWEFMESYVTIMAPLQKTIVQ
FT                 FQEEQLHYGNFYALWLVCKLTTNQILSKSAPDSIIYTIGEALIESMETRTK
FT                 KLTSNVGFEACLYLDPRFHHILDSSQKERAVSFLKTLWAQIKMHSPIATLS
FT                 SSTSSIASEDSNSKSNFDILDDFLSVSVVPNESTDVHAKIETLKLPYMKSS
FT                 TNVLHFWKERKSCDAELYELSKICFAIPPTQVRTIT"
XX
SQ   Sequence 2827 BP; 972 A; 486 C; 538 G; 831 T; 0 other;
     tcgttttgct cttgctacag ctgtcacttt tttccagagc gggagcagag ccgtagcaga        60
     aaaatgaaaa ttgactgctc tgctctgctc cgagctacga aaagttcaaa gctattgcta       120
     tagcaacagc agaaaaaaat attttgtgct cctcgtagcc gtagccgtag ccaaaaatct       180
     agagcgagag cagagcagag tcaaaaatat tttttcatgt gctactgctc tagcttagtt       240
     ttgtttttgt ttttttctcc cctgattttt atgcaccgtc actgtgtgac cactttcttt       300
     acctcctttc ttccttaccc actttcttta cccttgtaag aatgataaga agaaaacaga       360
     tttgtcactt gtaatttgga attcaaggtg ctaatatgtc tctgaccaat aaatcgttca       420
     atattttcaa atattttgag gagggtgaca acgggctcgt taaatgcaaa acatgttttc       480
     gaatgttaaa aaaagatcgt gcctttaatt taaagaaaca tttaatgttg catgacattc       540
     gacctgaaca aaaagaaaat gattctagtg gcatgcagcc caaaaaaata gttaaacatc       600
     agcaaattaa agttcaaatc aataaaaaac aattaatccg gtcctacatt ggtctagtca       660
     ccgagaatag cgtcccattt aatgtgctaa attcagacaa tatgcgtaac ataattgatc       720
     ccatatgtca aggtctaaaa gaaaaaagtg ggaaaaactt ttcattaaat ggaacaaagt       780
     gcaaatctgt tcttcgacag gtagcagaaa aaattcgaca agaaatacat aacgaatgta       840
     aacatcggat tctatcatta aaaattgata gtgcaacgcg acttgatcgg aatatattcg       900
     gtgtcagtgc tcaattcatt agttcagatg aaataaaatc gcgagttctt ggaatggtgg       960
     aactcagagg agctgggtca agttcagcca aaaatcttgc caaggagatt ctatctgtat      1020
     tagacaaata cggaatatct ctaagccaaa tcgtgtcaat tacttcagat aacggggcaa      1080
     atatgataaa gacgacgaaa attttatcag aaatgaactt gagcgaagat gacatggaag      1140
     atgccggtat tcaagagaac gtcgagtaca ttaagcaaat cgagcttttt ggaaaaactg      1200
     aaactgcgct tgtaggtgat atacaaatat gtcgctgtgc agcacacact ggacagcttt      1260
     gtgcactcga cgtgacaaaa aatgcaaata ttagagaata tttgttaatg tgccgaaatc      1320
     ttacgaaaca cattcggaag caccgtgact tgtttgaact gaaaaatttt aaattacctc      1380
     aattggattg tccaactaga tggggatcaa cttacaacat ggttgaccaa ctcagtaagg      1440
     cgaaaagtat tttaagcctt attgaaactg tcgagaacaa atcaagagat gacgatttta      1500
     tagttaatga aatgttatgg gaatttatgg agtcgtatgt gactattatg gctccactac      1560
     aaaagaccat agtgcagttt caagaggagc aacttcacta tgggaatttt tatgctctgt      1620
     ggttggtctg caaactgacc actaatcaaa ttttatcaaa aagtgctccg gattcaatta      1680
     tttatacaat tggagaggcg cttattgaaa gtatggaaac acggaccaag aaattaacat      1740
     ctaatgttgg cttcgaagct tgtttgtact tagacccaag attccatcat attctggaca      1800
     gctctcaaaa ggaaagggca gtcagtttct taaaaacatt gtgggcacaa atcaaaatgc      1860
     atagtcccat tgcaacattg tcatcgtcta ctagctcaat tgcttcagag gacagcaata      1920
     gtaaaagtaa ttttgatatt ttggatgact ttttaagtgt aagcgttgtg ccaaatgagt      1980
     caaccgatgt acatgcaaag attgaaacat taaaattacc gtatatgaaa tccagtacaa      2040
     atgttttaca tttttggaaa gagaggaaat catgcgatgc agagctctac gaactaagca      2100
     aaatatgttt tgctataccg ccaactcaag taagaactat tacttaattc gaaacaaaat      2160
     tttaatttcc aaacatttat aggtaacaat agagcgggca ttttcttcat taaaactggt      2220
     gctgtcggac aacagaaatc gtttaagcca cgacacatta gaaaatatac tccttgttcg      2280
     cctaaactca acacacttag ataatgcgat cgacaacttg agtttatttg aagacgacga      2340
     ttaattattt actaaataaa tttttaaata gaaaattaaa tacatgactg aatagcataa      2400
     tttttaaatt ttgatttaat taggagttat taatatttat ttgttgtttc tgtttctgtt      2460
     tgtttattat tacctaaata tcattcttac aagggtaaag aaagtgggta aggaagaaag      2520
     gaggtaaaga aagtggtcac acagtgacgg tgcataaaaa tcaggggaga aaaaaacaaa      2580
     aacaaaacta agctagagca gtagcacatg aaaaaatatt tttgactctg ctctgctctc      2640
     gctctagatt tttggctacg gctacggcta cgaggagcac aaaatatttt tttctgctgt      2700
     tgctatagca atagctttga acttttcgta gctcggagca gagcagagca gtcaattttt      2760
     atttttctgc tacggctctg ctcccgctct ggaaaaaagt gacagctgta gcaagagcag      2820
     agcaata                                                                2827
//
ID   hAT-9_DTa   repbase;    DNA;    INV; 2310 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; autonomous; hAT-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2310
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6217-6217 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           223..1896
FT                 /product="hAT-9_DTa_1p"
FT                 /translation="MVSITKLFNQHNLLIWLRVDSQEKGKPRASDVWKRFQ
FT                 KIDKTTAKCLLCNKQYKTSNNTSNLRDHLRRKHAYCEDQSLLEPEISESTT
FT                 PSHYEQDSPRKIEIDNAVMNLIVSDMQPFRIVEETGFKKLVSILDPKYKLP
FT                 SRTALQNVCLMTSYEKCKERLQNLLKCVNYCSITSDGWTSRANVNYLTVTC
FT                 HFILKDKLRSAVLSTCPLINDTNHSGQNIADSINKVLDEWNIREKVVAVVT
FT                 DNAQSMKKACTILQKFNLPCFAHTLNLVMQDVLKHYSLKDIIIKCKKLVGF
FT                 FKSSSIAYAKFRSAQLRNPPLSLIQEVATRWNSAYKMINRILLTKDSISTV
FT                 LLSTRKSPEPLNAEEIEFLEDIEDLFSQVDDATKKISANDSVTISLILPLT
FT                 CGLLKNIMESCQNMKTVEGTFIGEYLLERLVHRLKSYEEMPLLKKATLLDP
FT                 RFKKEGFKSLSIADEAAAELKREVELIEKGTLEVSSSNLSSPQSPSLLGKR
FT                 DIFGFLKSAVLKKSIQVEEGHILEQYFRQINISTAKNPIQYWEVISAHIFV
FT                 LIIYIVXLLFL"
XX
SQ   Sequence 2310 BP; 787 A; 407 C; 424 G; 690 T; 2 other;
     tagagctgac aaaagatcga ctgaagtcga ctacaagtcg atagtatgct ttgcgattgt        60
     tcagtcgatt ttcagtcgac tactatcgac ttttttttta atcaagtacc gtttgtagct       120
     catttctata gtttaactct aatatttctt tataaaatca aaagaatctt ttgaaattat       180
     tttcatttaa aatggagaag tttttagctg tttccaaaga aaatggtaag tataactaaa       240
     ttatttaatc agcataatct attaatttgg ttacgagtag actctcaaga aaaagggaaa       300
     ccgagagctt ccgatgtatg gaagaggttc caaaaaatcg acaagacgac cgcaaaatgt       360
     cttttgtgca acaagcaata taagaccagc aacaacacct caaacctaag ggatcatctc       420
     agaaggaagc atgcttactg cgaagatcag tctttgcttg agccggaaat aagcgagagt       480
     actacaccct cgcactatga gcaggactct ccccggaaga ttgaaattga caacgctgtg       540
     atgaacttaa ttgtatcaga catgcaacct tttcggattg tagaagaaac cggatttaaa       600
     aaattggtga gcattttgga cccgaaatac aaattgccta gcagaaccgc cttgcaaaac       660
     gtgtgtctaa tgacgtcata cgaaaaatgc aaggaacgtc ttcaaaatct tctcaaatgt       720
     gtaaattact gctcaataac gtcagacggt tggacatcaa gggccaatgt taattattta       780
     accgttactt gccattttat attaaaggac aagctaagat cagcggtttt atccacttgc       840
     ccattgatta atgacaccaa tcattcgggt caaaatattg cagattcaat taacaaggta       900
     cttgatgagt ggaacattcg ggagaaggta gtagccgttg ttactgataa cgctcagagc       960
     atgaaaaagg cttgtacgat tttgcagaaa ttcaatttgc catgttttgc tcatacccta      1020
     aacttagtta tgcaagacgt tttaaagcat tattccctga aggacattat tattaaatgc      1080
     aaaaaattgg ttggtttttt taaaagtagc tcaattgcgt atgctaaatt ccgatccgcg      1140
     cagcttagaa accctcccct gtctttaatc caggaagtag caacgcggtg gaatagcgca      1200
     tacaaaatga taaatagaat tttactaacg aaagattcta tttcaacggt tcttctaagt      1260
     acccggaaat caccggaacc gcttaacgct gaggaaattg agtttttgga agacattgaa      1320
     gatttattta gccaagtgga cgatgccacg aaaaaaatat ctgctaacga ttctgtgaca      1380
     atttcgttaa tattgccttt aacgtgtggt cttctgaaaa atataatgga gtcttgtcaa      1440
     aatatgaaaa cagtggaggg cacttttata ggagaatatt tgctggagcg tcttgttcac      1500
     cgattaaaat catatgagga aatgccatta ttaaaaaaag ctactctttt agatccgcgc      1560
     tttaaaaaag aaggcttcaa atccttatcg atcgctgatg aagcagcagc agagcttaaa      1620
     cgtgaagtgg aactaatcga aaaaggaacg cttgaggtat cttctagcaa tttgtcatcg      1680
     cctcagtcac catctctctt aggaaaacgt gatatattcg gattccttaa aagtgcagta      1740
     cttaaaaaat ccattcaagt tgaggaaggg cacatcttag aacaatattt caggcaaata      1800
     aatatttcta cagcgaagaa tccaatacaa tattgggagg taatatctgc ccatattttt      1860
     gtattaataa tttatattgt gwgtttgctc tttttgtaga tgtcggagtc aaaatataaa      1920
     actttgaaat gctgcgctag gaaatattta catatcccag caacctcaac tgaatctgag      1980
     cgaatgttca gcaaagcggg ttacattgct tcagatcgaa gatctgctct aaagcccaga      2040
     aatattaaca tgttactttt tttaaacaag aaccaatggg tccttagtaa ttaaaaattt      2100
     gacttttatg twtatttaaa tttacataca gactgattaa aaaaaaacaa acaatactat      2160
     taaaggcttt atttattatt tacttggaat agaattgata aaaacttttc ttctaatgtc      2220
     aaataacgac tagtcgataa tatcgaaaca gtcgactgaa atgctgtcaa acagtcgact      2280
     gactacacta tcgatagttt tgcagctcta                                       2310
//
ID   hAT-9_LMi   repbase;    DNA;    INV; 2760 BP.
XX
AC   .
XX
DT   23-APR-2014 (Rel. 19.11, Created)
DT   23-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2760
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3034-3034 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(239..598,609..1205,1126..1389,1320..1970)
FT                 /product="hAT-9_LMi_1p"
FT                 /translation="MAHSVKKRQSSDVLSRAFKSEWGLQFFVEEKGENSQC
FT                 LVCSRIIAGHRKYHIERHYTTVHKELSALVGVDRENKFAELKRCSAGQQAD
FT                 LNVSNPLKYCVCVVCTHLPVEMQHVYSPFRCFPATSCSGPALKASYKIALK
FT                 IARSNKPFNDGEFIKECIIEAAELVTPLEVQKFSEISLSRRTITRRIAVMA
FT                 ADVYRQLIHSVSKFIAYSIALDESTDITDTAQLAVYVRGVDSDLHVTEELL
FT                 DLVPMKDTTRGIDLLKAVEEAVEAVGLNWSMLVSVTTDGAPAMRGTQNGLV
FT                 ALLRKNYNDHKTICTEFIASSIKRHLCHCCAKTTTITRRFVRNSLLRPSRG
FT                 ICAKFSGMEHVMKLVVRIVNYIKSHGLLHRQFQQFLTEVHEQYGDVIYYSE
FT                 VRWLSRGACLKRFTVWRCHLLLRSTLVKSGGMPETILELRPAIVQFLKDKE
FT                 KHEPILEDPEWIADLAFLVDLTAHLNVLNKTLQGEKQLIPHLMEKVEAFKM
FT                 KIALWKGQLLNKNTAHFPNLSDVKDNANFEKFISVLEEIKEQFANRFQDTA
FT                 NLAPLFETFSRPFAVSLESAPVHLQMELIDLQCNSRLKDKFYYVKTIQEFY
FT                 EGFPQDDFRVFIMRLQRLYPCWVNIV"
XX
SQ   Sequence 2760 BP; 770 A; 544 C; 644 G; 802 T; 0 other;
     cagggctggg cacggcgggc catgccgggg ccagctgggg ccacgggcgg gccaagtgag        60
     gctcggactg tctcggcttt gctcgcgctt cccggaagtc ctcgctatgg cgcgacattc       120
     agttttgcag tgcgatgcgc ctctgttgct tgcggcttat ggtgcgatat tttcccaact       180
     agcagcgctg tttgcttttg gttaagaggg agtgtgtgac agaactgtgg ttgcagcaat       240
     ggcacattca gtaaaaaaga ggcagtctag cgacgtattg tcacgagcat ttaaatccga       300
     gtgggggtta caattctttg tcgaagagaa aggtgaaaat tctcagtgtc tagtatgcag       360
     tcgcataatc gctggacacc gtaaatatca tatagaacgc cattacacca cagtacataa       420
     agaattaagt gctttagttg gcgttgatag agaaaacaag ttcgcagaac taaaaaggtg       480
     cagtgcgggg caacaagccg atctcaacgt aagtaaccca ttaaaatatt gtgtttgtgt       540
     tgtttgtacg catttgcctg tagaaatgca acatgtttac agtccgttcc gttgtttcta       600
     atttttagcc ggcaaccagc tgtagcggac cagcattaaa agcaagctac aaaatagcgc       660
     tcaaaattgc cagatccaac aaacctttca acgatggcga gtttattaaa gaatgcatta       720
     ttgaggcagc cgaactcgtg acgccattgg aggttcagaa gttttctgaa attagtcttt       780
     cgcggcgaac aataactcga cgcatagctg tcatggcagc ggatgtctac agacagttaa       840
     ttcacagtgt cagcaagttc attgcttact caattgcttt ggatgaatcg accgatatta       900
     cagacacggc acaacttgca gtttatgttc gtggagtcga cagcgatttg cacgtgacag       960
     aagaactgtt ggatttggtg ccaatgaaag acacaacgag agggatagat ttgctgaaag      1020
     ctgttgaaga ggcagttgaa gccgtcggac taaattggag tatgttggtt tcggttacca      1080
     ccgatggagc gccagcgatg cgagggacac aaaatgggct cgtagcattg ttgcgcaaaa      1140
     actacaacga tcacaagacg atttgtacgg aattcattgc ttcgtccatc aagaggcatt      1200
     tgtgctaaat tttcagggat ggagcacgtc atgaaactgg tagtccgaat tgtaaattat      1260
     ataaaatcac atggactatt gcatcgccaa tttcaacagt ttttgacgga agtccatgaa      1320
     cagtatggag atgtcattta ttactccgaa gtacgctggt taagtcgggg ggcatgcctg      1380
     aaacgatttt agagttaagg cctgctattg ttcagttttt gaaggacaag gaaaagcatg      1440
     aaccaatatt agaagatccg gaatggattg cagaccttgc atttttagtt gatttgaccg      1500
     cacacttgaa cgtcctcaat aagacgttgc aaggggaaaa gcagttaata cctcatttaa      1560
     tggaaaaagt agaggcgttt aaaatgaaga tcgcattgtg gaagggacaa cttttaaaca      1620
     agaacactgc ccatttccct aacctttctg atgtgaaaga caatgcaaat tttgaaaaat      1680
     tcatttcagt tttagaagaa ataaaggaac agtttgcaaa tcgctttcag gatactgcta      1740
     atctcgcacc tctttttgag acgttttcaa gaccatttgc tgtatcactt gaaagtgccc      1800
     ctgtgcattt gcagatggaa ctgatagatt tgcagtgtaa ttcccgactg aaagacaagt      1860
     tctattacgt aaaaactatt caggagttct acgaaggatt tcctcaagac gacttccgcg      1920
     tcttcataat gaggctgcaa aggttatatc catgttgggt caacattgtg tgaacgattt      1980
     ttttcagtaa tgaaattaaa caagtcacga ttacgtggca gcctgagtga cgacaatctc      2040
     ataaactgcc tccgcctgtc agtgtgccga cagtttgttc cagatatcaa ttttattaca      2100
     tattcagaga atcaaaacgc aattcaataa ttgttttttt gtttgtgata tttatggtaa      2160
     gaatttggtc atgacactgc ctgtagagag gtgctacgta atcgtttgtt ttttcttttc      2220
     acatgtactt gtgctaattg tttccatgcc tttttgtgat atattctgtt tagaaccggt      2280
     caggacactg ttggtagaga attgctaagt aataattctg tttttctttt gcatgtaggt      2340
     gtgataagtt attccatccc taacgtcatt ataatgatgc tacattttgt ttttgcctct      2400
     gtttctatac ttacgttaaa atgtgagact tttacaagaa aaaacgtggc tcgcacacta      2460
     ttactagaag aatgcagttg caaaacatgt tatttattta ttaatttatt ttacaaacag      2520
     ccagcctctc tttgcgattt atagcttcac gttttcgcat tctttaatac ggcataatat      2580
     aacacatagc agcatgcaaa ccggtcttgt gttccgtgcg cgacggttct gccatctaag      2640
     cggcgactct gcagtttatt ccttcgaagt tcccgctcag acggcagagc ggcgtggtgg      2700
     ggccagcggg ccatcaggcg ggaaagaatg gcccgcgggc caagtttgtg cccacccctg      2760
//
ID   hAT-N10_AAe repbase;    DNA;    INV; 1083 BP.
XX
AC   .
XX
DT   22-APR-2019 (Rel. 26.01, Created)
DT   22-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1083
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1083
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 127-127 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1083 BP; 359 A; 187 C; 205 G; 331 T; 1 other;
     tagagatgta ccgaatagca ctattcggcc tttggccgaa taccgaatag ttgaaatatt        60
     attattcggc caaacgaata ttcggccgaa cattcggccg aataatgact taatattcgg       120
     tcaaataaaa cctaaatatt cggccgaata acacccgtat gtgggtccaa tttcttaaaa       180
     actatatttt taattctggg tcaatataaa gaagacagtt tttaggtagg gaaagctgaa       240
     gaataaaacg aagtataaat ggaaatgaat gatcgtcttc ttgagctwtt gaaaccgttt       300
     gcagaaatca taagttctga ggatttctgt atttctgaag ctaggaagct gtatcctatt       360
     gctgtttttt gtttaagaaa tttggtttac tattcaaaaa attgaggcaa atagaccgca       420
     gatccctgac tcgcatgata atagaagaac gtgatcagta ggttttgcaa agaatataga       480
     acgtatagaa agtcctgata attgacggac tttaaggggg ctcgaagagc ataaatctag       540
     agaacctgac agccgttcgc gctgaatatt gaatgattgg tcaacaccag cgattgacca       600
     gaaagttaaa ttttcagcac aaacggttgt ctggttctct agatttgtgc tcttgaaaat       660
     gccgggttta gcttcgatgc atctatacct taaaaacaaa ttttcaaacg cttctaacta       720
     gccaagcggt acgttacagc tcctgcaaga tgagatacaa tttgatttgc cgaaaatggt       780
     aacgccatag aacagagaaa ttctcacttt ttcaatattt ggcatcaaaa tctattcaag       840
     gtgtccataa aaagaaaaat tcggtcatca cttgaataaa ttattgattt ttttaaattt       900
     tccttacata aacataatat ttattctaca gtttagttta ttttgttatt attcggtcac       960
     tattcggcct attcggccga ataacggatt tcattattcg gcagaacgaa tattcggcaa      1020
     aataaaaaaa atcgagatat tcggcccgaa tattcggccg gccgaatatt cggtacatct      1080
     cta                                                                    1083
//
ID   hAT-N10_AP  repbase;    DNA;    INV; 372 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; hAT-N10_AP.
XX
NM   hAT-N10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-372
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2110-2110 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 372 BP; 132 A; 62 C; 57 G; 121 T; 0 other;
     catagataat aaagatatgg ataggccatt gaagcttatc atgcgttcat gtattactat        60
     caattttgag gttatatggg gtaaaatggt aaatacacct actacattta tcattaatat       120
     aatgccgaaa actactcaaa accaaaagtc ataggtatat tatattatta ttatagttcc       180
     atgttagaaa tttagaatat ttcatattat accggcgggc ggcaattatt tgaagtttga       240
     acataacctt aaatagtacc ccatgcagga gagagaacat tcttaaagat attttctctc       300
     tcccacaaaa aagaacgcga cctcatacgg tgttaatata gccatggcct atccatatct       360
     ttattatcta tg                                                           372
//
ID   hAT-N10_BTa repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   24-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-341
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 941-941 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to the consensus.
XX
SQ   Sequence 341 BP; 96 A; 73 C; 74 G; 98 T; 0 other;
     cagtggcgat tctgcaagtt ggcaacactg tttttcctcc atttaaatcc attgaaaata        60
     tcgattctag gtgaggcaag ctgcctcacc aagaatcgat tgttttacat acatttaaat       120
     ggaggaaaaa cagtgttgcc aactttcaag aatcgccatg gactctaacg tcgtcaacca       180
     ttggcggatc cagcaaattg gcaacactgt cttttctcca tttaaaccta tggaaatgta       240
     tcgattcttg gaggggccag gtgctccgac aagaatcgat tatttagcat aggtttaaat       300
     ggaggaaatc cggtgttgcc aaattgctgg atccgcctct g                           341
//
ID   hAT-N10_LMi repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.11, Created)
DT   10-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-723
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3067-3067 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 723 BP; 196 A; 158 C; 145 G; 224 T; 0 other;
     cagtggcgca gccacggggg gggggggggg ggctaatggg gctgaagccc ccccccccag        60
     cacctcccaa agatttttta attttattat tttttattgt tttcattttt tatttttaaa       120
     caggtcggca ccggaaattt gaaatagtac acatgtaata aatcacaacg taactataat       180
     ttgccaagca caagtgaacg tgacaatggg tcgccaacgt gatgccgcca ctgagaacgt       240
     gtgctgctgt tactgtgagc ggttttaatg ccgccgcgac cagctttgat gctgccgcta       300
     ttgttactgc tatgctgaag ttacgagccg attgttcata tgcggcgacc cgctgcttag       360
     caggtcagcg gcgccaccga gtggaatctt atgaacaaca atagtgttat tttagttcaa       420
     tttttacaca tagagtctca tgttaattaa actgtaaaga cctttctctt tggctagtaa       480
     catagaagct gcttaattat tttacgagct gattatatac actccatttc caccacgttg       540
     ctcctcttcc actttcaaat taatgcgagc ctactcattt tatttcttgt gcaattgttt       600
     tcgtagtata attggttaaa ttataaaaag tgtaaaaata agtcatagat taataaattc       660
     aataggcttt atttttaaaa aaatagcccc cccccccaga accaaatcct ggctgcgcca       720
     ctg                                                                     723
//
ID   hAT-N10_RPr repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N10_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-571
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3351-3351 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 571 BP; 185 A; 90 C; 88 G; 208 T; 0 other;
     cagggcttct taaactatgg gtcgcgaccc caaatggggt cgcgtagcaa aattctgcgg        60
     tcgcgagaga ttttaatgtc aaatatttat atataccatt ttataacatc actagagttg       120
     gcggaataca gtggacttgc agcgtctaga cacgcgcatt tgttgaaggt tttgagctat       180
     ctccaccgac agcagtaaac gatcgatgat cgctattatt atactattat tatccatctc       240
     attaaatttt ttacttatat tttaatttaa tacttaccac gcaactactt gaatatattc       300
     gagcgaatta agacgctcag aatccacttt tatttttgaa actataataa atacaatttt       360
     ataatttttt gtgcaatttt taattttaga tttttgtatg tttcaaaacg aattctaaaa       420
     ctatatattt tcatatgtat atgtatattg ttacctaata aataaatcat caaaaaatat       480
     taatttattt ttcttttata tttgtatggg gtcgtcaaga aactcgcaat cataaatggg       540
     gtcgtgaatg acaaaagttt aagaagccct g                                      571
//
ID   hAT-N11_AAe repbase;    DNA;    INV; 2112 BP.
XX
AC   .
XX
DT   02-MAY-2019 (Rel. 26.01, Created)
DT   02-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2112
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2112
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 142-142 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 2112 BP; 692 A; 383 C; 384 G; 653 T; 0 other;
     tagggtgggg cttatttcca aaaatcttcc gtagtcagga tttacaaagt ggaaaatgat        60
     caccggtccc aaaataacat cctgtgaaaa aatgagattt tttggtgaag gtttagaggt       120
     ggcgcaaagg gcgtaagtgc aattttccca ttttagtgaa ctctgaaaaa atttggtatg       180
     cttttcagct tgttttggtg attttaggac ccttaagggc aaaaaatcac ctcaaaattg       240
     cgatatctcc actcctttag atgatatttg acgaaatata ttttatacat gcgatttttg       300
     gcccttgtat aggttacgct gactgattac tatgaacccg aataagcata tgaatagctg       360
     gggaggattc ctatgcaagt agaatggaac aaagagcaaa gaaggacgag agaaagaaca       420
     aaggacacag aagaatgtaa ggtggggtga gttaaacaag ggaaggtgta actgatgata       480
     ttatattaga atgaactacg gaaccgtgaa aatatctcgg ttggatgtat gagatgtgat       540
     tatatgcaag ttcaacacta attttgtatt ttagaatgcc cgttttatat aactccagca       600
     attgctttta taatctgaaa gaaagtacag aggggcctaa accaatacag gctcaaaatc       660
     cgtacacttc atacaaatag aaggagtttt atatgaagtg gaagggttta gattcatttc       720
     ataggtgttc ggattttgat cccgcacgat atatccttat taggtaaatt cataaacgat       780
     ttctgctttc tagcagtaac acttcctctt agaatttcca caggaatttc tggattatga       840
     tgccatttca acaattaatt gcgtttgggc ttccaatact tcacttttgc cacaacacct       900
     tcaacataac ttcggacaaa cgaaaatgca gttgaagttc aatacatcgt tctacatctg       960
     tatatgaaat cgatgtatat aaacaacaac agaaggaaaa aatcggtagt caaaattcaa      1020
     attactgcac gagcttctat agggtgcaag agataaagca cttcaggttg aaaacctctc      1080
     gaattaaaac aaaatttaag cttcacagtt ctgaaacata tttttttagg aattgcgaca      1140
     gagctacatg aaggaatttt cacaggatgt cctatgtata tataaatgct tatataaatt      1200
     tgttatgaat ttaattaata ctgtgtgagg ctgaatttcc aggatgtata ttttgcaacg      1260
     gtccatttcg ataaattgct atcaacatcc aggaaaaaaa accgaacgat tattgaacta      1320
     aagcagtgaa gtggacatgc atttatctat acctaccagg agaataatga tgaaacttcg      1380
     catggagttg aggacatttt agccgttact gcaatttttc tattaagagt aatctaaaat      1440
     cgtatgcatg ggtcgaaaac tagagatggg tcaaaaattg gtgctcttcc cctacttgaa      1500
     gaaacattgc tcgaaatatt tctgaagtag gtaatattaa atagaagtca atataatcat      1560
     cgttttctac tggaactttt ctccattgcg taaaatcgag attttacaag attcctcagt      1620
     tacactcaac acatcactag tttcaccctc ccaactgttt aacccacccc accttacatt      1680
     cttctgtgtt ctttgttctt tctctcattc ttctttgctc ttcgctccat tttactagca      1740
     taggaattct ccccagctaa tcatatgctt attcgggttc atagtaatca gtcagcgtaa      1800
     cctatacaag ggccaaaaat cgcatgcata aatatatttc gtcaaatatc atctaaagga      1860
     gtagagatat cgcaattttg aggtgatttt ttgcccttaa gggtcctaaa atcaccaaaa      1920
     caagctgaaa agcataccaa attttttcag agttcactaa aatgggaaaa ttgcacttac      1980
     gccctttgcg ccacctctaa accttcaccg aaaattctca ttttttcaca ggatgttatt      2040
     ttgggaccga tgatcatttt ccactttgta aatcctgact acggaagatt tttggaaata      2100
     agccccaccc ta                                                          2112
//
ID   hAT-N11_AP  repbase;    DNA;    INV; 631 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_AP.
XX
NM   hAT-N11_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-631
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2111-2111 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 631 BP; 234 A; 103 C; 98 G; 196 T; 0 other;
     cagcgtttct taaactgtgt tccgcggaac cccagggttc cgcagagatc acttcagggt        60
     tccgcgaaac ttaagtgctt tttttcaaaa ttttaaatcg atctctgtgt taaatgttgg       120
     tgcatttcaa aagatgaata tcctcaattg tcacaaaagg ccgtgttggc acttttacca       180
     tttgtaacca cttatatgtg tgaaacgggg ttcaccacct atgtaccaac aaaaacaaaa       240
     taccgcaaca gacttgatgc cgaacctaat atgagaatac aactttcatc aataaagccc       300
     aatattaaga atatttgtaa taataaaaag taatttcact catctcatta aaattaaaat       360
     ttagaagtcc tgttattgtc tgttatttaa aatatttttt gaattaaata cagaatagtg       420
     tgtacacatt attattaaac gaaattatta taatttttat tgcaaataat ccttacataa       480
     aatgacacat taaaactatt gaaacaaagt atgggttcta attgtcgagc tataataact       540
     tactgttgaa agctaaaaaa aaagtagggg ttccacgata aaagtggaca taaaaaaggg       600
     ttccacggat aaaaaagttt aagaaacgct g                                      631
//
ID   hAT-N11_BTa repbase;    DNA;    INV; 300 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   21-AUG-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-300
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 940-940 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. TSDs are 6-bp long. Termini show
CC   similarity to other hAT families.
XX
SQ   Sequence 300 BP; 99 A; 50 C; 66 G; 85 T; 0 other;
     cagggttgcc acagtcaggg aaaaccggga aatgtcaggg aattttaaaa agtcagggaa        60
     aaccgggaaa tgtcagggaa aatgacgaaa atgtcaggga aaatttgtta aatcaccttc       120
     atttgctttc tagaatgggt ttgagatttt gaacaagaaa ttttgcctga aaactatttt       180
     caattatgcc ttcttaacca tccgtcacat cttcaattgt cagggaattt caccaaaatg       240
     tgtcagggaa atcagggaaa tgtcagggaa tttcattttc taaattctgt ggcaaccctg       300
//
ID   hAT-N11_DTa repbase;    DNA;    INV; 991 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-991
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6154-6154 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 991 BP; 324 A; 201 C; 192 G; 274 T; 0 other;
     cagtggcgga aatttgcctt cgagaatcga ttccgaccgc catacttcga agccggaatg        60
     cattcggttt cataccacaa cactgtttac gattccataa ggttggccgc gttttccgct       120
     agtgtacctt caaaaccgca tacttcgaat cgagaaagta ggcggtagcc gagcacactt       180
     cgtgctgcat taccgtccta tatactgttg catatagggt ggtaatctat tcgctttact       240
     gagtggcata ccaagtatat gaggctgtaa tgcaagtgca ttactgaata ggatacctgg       300
     tttataggtt tgtagtgcac ccgttttact gactggttta ccctgtatat agggttgtaa       360
     tgcaaatgct ttacgaactg gtataccacg taataggggt ttattcgaag ccaaattaaa       420
     gaatgtgatt ttcaactaaa aattataatt ttattatttg ttttattaag acagctggca       480
     tcattgtaac gtagaataag ctacttagtc catttcttat tacagcatct atatttaaga       540
     ataaatggga aattagttgt caatttatta agaatgttta gctgtacttc ccatataata       600
     catcaaaatt tccactatat tttaccataa cacgtcagac tctgcaaagt tccaaaacac       660
     aagtgacgcg ttgcaagaaa aaagcgcgtt aaaaaagagt agacaaaaaa ttacacaaac       720
     aacatgccgt ggaaaccaaa acttgctgaa aaaaacatag gcgctcggat gtgtgcgtaa       780
     ttaaaaaatc atagaaacgt tcaacagaaa aaaaacgtgc gacccgaacg attcccgaag       840
     tcccgatgaa aagggagagc aggaaacgaa tacaatgccc cattacaatc ctacgttcca       900
     gaagctggag aaacgatcga ttacgaatat accttctcga atgcattcta tctccatacc       960
     caatttcggc cgaatgcgga ttgcgccact g                                      991
//
ID   hAT-N11_LMi repbase;    DNA;    INV; 4138 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4138
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2930-2930 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 4138 BP; 1194 A; 770 C; 860 G; 1313 T; 1 other;
     cagtgttttt caacctgtgg gtcgcgaccc ccagggggtc gcaaagactt gctcgggggg        60
     tcgccgtcac acgaggaagt acttgcacca ttgaacaacc agcccagtgc acctctgact       120
     acaaagggtt ccataataca aaaatatagg cctaataaaa gagaaattta ctttttgtta       180
     aaattatata attccttgtt taacattaat tctgaattga atagaacgta gattttattt       240
     tttgtattac aatgtgttat cgatgaataa gcgcaaagtc tgaaaactgt tttcaggaac       300
     cattcgttag ataaatgtac aagatgcaat aattaattct aagaaattaa aaaaaatcta       360
     cttctttaaa aattgtctat acagtgggag ctttcttaat cagcataatt cggttctgaa       420
     tcttgcctaa gttcgaaaca ctcgttatgc aaaatataca tttctgtcgg aaaccatgta       480
     aaataatgtc ttccattccg aaaaatacac attaaaaaca gcgtccaaca atttacaaga       540
     aagctgtatc aacagaaaga acattacatt cgttgccttt gagataacga acatagtttt       600
     gttagagttc gtgttgaggg gggttcaggg ggtcgccgga atattttagt cggaaggggt       660
     cgcatattgg aaaaggttga aaatcactgc catatggcaa cgcgaggcgt taatgggcta       720
     ctagatccat ctccagatga tttccttata tttacataaa aatctaatta catcctgcac       780
     tggcacgagc aataattttc gaagtcgtcg ttaaccgtca ttcacacaca aacgacaact       840
     gaaacataac cattaatctg tgacccccat aaacagtgaa tatgtcgcac gtaaacaatc       900
     agtagagagc actgcgtttg ccttgctttg ctctgactac agtatgtgtc aaattattga       960
     atttgtgtcc tgcttgtgtt acacagttta cagatgaaat ctgcttaaaa gctgtcgtta      1020
     ttgtgtgggg atgtgatctg atgacggttt cgttttagct gatattttta gaggacgtat      1080
     tttaaatgac tgttttaacg atacccgtgt tctgaaccta attttcgttt tcttctgttc      1140
     caggtgagta cccagtgttg aatgcctctg caccatgcaa gtcttacctg gtgagttgta      1200
     ttcagtttgt cttctcgttc cacgacgatt tccaaagccc tacatctcga aacagtgcag      1260
     aaaactgtac cagggttttg aatatacaag agctttgcag ttaaatgtga aatttaaaag      1320
     cgactttctt acgagatacg gaactttctg tttatattca catttacatt cggctctgag      1380
     gatatcccat ctttgtgaaw agaaaaatgg gaatgttggt aagtctatac ctgcagtaag      1440
     tagtctgtag atggaggtgg agcctgtaag atgccagggc gagaggtaaa tagttctatg      1500
     ttctgggtaa ttcagaatcg ctgtccccgg tttctaggga ttgtacaaga ggctaacatt      1560
     gtgcatacct gccaactttt acggtttatc cgtaaaattt accgaaattg cagcatttta      1620
     cggttttacg gatggactgt gttgttttac gacttcgagg gcaaaaattt gaaacgttaa      1680
     catttgataa tcaccccact tccgtacaat cgattgtttg cgtgggtcga aggcaagtct      1740
     acgatagagg ataacaagtt ctatgataac gattgatgct tttaagagtg tgatgtttgt      1800
     gtcgtcattg gagttgaatt taaagtcggg ataacagttc ttccatgtga atcttaggtt      1860
     tcgacaggct ctgcaccgca aactcaaaga agtgatcatg agttagttgt tggcattcag      1920
     acctagaaca cagtgatcga tctccaggat acagaaaaat tccttttctt ttcatcaatg      1980
     agaaagtact tttgtacgta ctgcctgtga ctacatcaac aagtttgcac tcaaggtttg      2040
     acaaaattga agatacacag ttttcatcca ttcgtttttc cttggaaacg tttcctatat      2100
     tgttatgcaa ggaagagaat gaaactacag atgagatggt gaatgagctt cggaggcagt      2160
     tcacagctct tcacgtagat gacagtttgg ttgcaaatca aggtgctgca gatgattcca      2220
     gttggacacc aatacgaaga attcgtggaa ccgaaggact tttctagaaa ttcggttata      2280
     cttaagtagt gctctctatt ctcaccacag cccatagcaa tgcaaaatgt gaacgtgttg      2340
     tcaaccttgt gaagaaaaat agaacagact tcaaatcatc catgtccaat caatctcccg      2400
     agtctttgta ttttggagag caatagttct ggtacctgtc aagacaaaac attttctcaa      2460
     gacatcttgc aggaagctaa gaaggtcaca aatatgactt caaagtcgaa ctagcatgtg      2520
     atttgcagtg tgtgttatat cttgcctatg ttaagttaaa ctagttttat tgtgtaaagc      2580
     ctttttcaac tatcgcatat ctgcttaatt tatcaaggaa gtcttgttat gtatgctcca      2640
     aaccaatatt caccacgcct gctgcaattt aacatgcatt tcttctcgat tgttacgttc      2700
     atctagaaac gttggcgtag gatgtaagtg gatatgaccc aaaagtattg ttatgttatt      2760
     attatattat tattattatt ttcatgaaac cgtggtatgt tggcattcgt cagacttttt      2820
     gtcgcgcgtg atttttactg atagcccttt tcaaaagctg gcaggtatga ttgtgataac      2880
     gaactcatgt tcggaaatta atcttttact catatatggg ctggagaaaa agtaacgaca      2940
     actattattt ttctcggaga tgacattatt gacagagatg cttaccgtta cacactttca      3000
     gtataatcgc ccccgttatt tatgaccttt tgccgaatgt ctggaaggcg tcgtatacca      3060
     tctgcgcgtc tatttttgat gacgtcgcgt attgcccgcc ctatggcgta gatgagtgtt      3120
     tttcatcctg tgggtcgaga ccccctgggg ggtcgcaaag tcttgctcgg ggggtcgcgg      3180
     tcgcaggagg atgcagtagc ggcatgttcg atagcaaacc tacgtttcgt gacgttcaac      3240
     tactgtggca gaaggggcac acggaagtga cagggtttcg taaaagtcgc ttaattaaca      3300
     agtcatccgt aggtggaaaa ttgcctttgt tgtgacacgt ttcgggtggc cctcaatgag      3360
     acatcgaaag agtgacagat acaagatgta cctatgccac ttttgatttc tgatgttggg      3420
     ccgaccgaaa cgcgtaacaa tgaagccatt tttccacctc atgatgaatt gttaattaag      3480
     cgacttaaca gcgtttgtgc agtactgcta cagttattta caatggtcgc aatcttcttg      3540
     tatgactttg tcacatgttc aaatattgtt atgtcagaaa aatatcacta acataatatt      3600
     atttttagtc aatacataac aatacctttt tactactggg tcatagtagt ttgctgctgg      3660
     taacgagttt tcagtgcagt attattttta atcaactaat atcaatacca ttttattact      3720
     ggatcatagt attttgctgc tagttaaggg ttttcagtat cctttcgaag aaatccaatg      3780
     tttatgagca cccttgaaat attaagaagt gatgcatcag ctatgatggt tttatactcg      3840
     cacattacaa cacgtcacct caaattacgc attgtggttt attattcatg acagcaaaac      3900
     catacatcaa atacgtgtag tcataaagtc tttttttttt ttttattcgt ttccgctact      3960
     gcagctttca ccagatgtga atggctgcgc agatcttaga tacatctaag aaagaaaatt      4020
     aaatactttg cctttggaat cactgacata gttttattac gggcctgggg gggggggggt      4080
     cgccgggcat ttttactcgg aaagggggtc gcgcgttcaa aaaggttgaa aaacactg        4138
//
ID   hAT-N11_RPr repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N11_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-435
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3352-3352 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 435 BP; 127 A; 84 C; 98 G; 126 T; 0 other;
     cagcggttct caacctgtgg gtcgcgaccc cggcgggggt cgaacgacca aaacacaggg        60
     gtcgcctaaa gccatcggaa aatacatatt tccgatggct ttagccgctg agaagccgcg       120
     ctaccgtctg cagcagcgct attcagctgg aacgcacgcc gttatggccg ttaatgttat       180
     ttattggaat tagtaataaa tatttctcaa tatataatta aatattgttt ttgtgattaa       240
     tcactatgtt taaattatgt ttgatttgta gcaatgagaa tacataatgc atatcaggta       300
     tttacattcc gaatcataac tgtagcaaaa ttacagttat gaagtagcca ccaaaattat       360
     tttttggttt ggggtcaccg caacatgagg aactgtattg cggggtcacg gcattagaaa       420
     ggttgagaac cactg                                                        435
//
ID   hAT-N12_AAe repbase;    DNA;    INV; 1148 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.01, Created)
DT   06-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1148
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1148
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 143-143 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 1148 BP; 397 A; 205 C; 212 G; 334 T; 0 other;
     tagggtgacc atctcctgaa gactcaaaat caggacattt taaaattttc acaacttagg        60
     gtgctttggc attgggggtt tttctcggcc gatttgtctg aaactttgca ataagaagca       120
     ttttaatacg atgcatgttg tggccaaata tgaggtcagt agctttcaaa aaccccactg       180
     ccaaagtgaa tcaaaagtgc caagaatagg atccggccct acctgtgcaa gttctgtttt       240
     agctcaaatt ccaaatatga ctcatattcc caattcccaa tagcattttc aaagtttttt       300
     ttctcaattt ttaatgttga ggacttgtaa tgtaaaatca cgagacactt ctgattagca       360
     ggtatgagta tacgtacaaa ttcttaaata taactaggta gtcttttgct aagacaataa       420
     gaatccttta ggaatctgcc gagggtctca gaatattaat ttagatatcc cacgaaatcc       480
     tgcagattat tgcagcaatt taccgatgat ttcaaaaaaa aagaatgttt agtgtctgat       540
     caagatttcg ctaggtaata actaagaatg tcaaaaacag ccaagtatat ttcatagagt       600
     ctaataaaaa cttaaatgaa atccacctag aaccttttgg gagatttata agacataata       660
     atgccaggaa ataacggtag cattcctcga atcgtggtta tacagagaat atgctaagaa       720
     tctttttaag aatttcataa agaagcttcc gttaagtttc cataaaggtc tcgtaagaat       780
     tcgctaagga tctcgccagg aattcatgaa gagtcctaca aaaaatcaat caaagttttt       840
     gggagaaatc cgtcaaagat tttctttgga aaccgacagt tttttctaca cgattctctg       900
     aaacattcgt aaaggatctc tccagaaact ttgattagac atggtgtgca gcacgagatg       960
     ttagatggag gaaatccctc tttgcgatgc atcaaaatat tgaaacgaag ataggaaatc      1020
     ccgtggttgc tactatctgt gctgaaaaag caggacaaat cttaaaatat gaaaaataaa      1080
     tcaggacgcc tcaaaagaaa ctcaaaatca ggacatgtcc tgctaaatca ggacggatgg      1140
     taacccta                                                               1148
//
ID   hAT-N12_AP  repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_AP.
XX
NM   hAT-N12_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-492
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2112-2112 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 492 BP; 162 A; 50 C; 62 G; 218 T; 0 other;
     cagggctagg atttatatgc aacagcatgt tttttttgct acttctgatt attgattttg        60
     tcagtaatgt ccacgaatca cctcatgatg agataaatgg tggtattttt attttgcatg       120
     tttttgcata ttttggataa aatgcatatt attgcatata ttgaataaaa ttaatattat       180
     tgcatatttc gattataaga atgtaaaaaa tgcatgtttt atagtatatt tcgtaaaact       240
     tggttttttt gtcaaatata aattttattt catgtaacac gcacgtagtt aatgtgaatt       300
     atacatttta tttctaaatt atattatttt aagacaaaca gcctatcatt gatgtatttt       360
     aataaataaa tatttttttt gtaactatat tttagtgttt atcttataaa aaattaaatg       420
     catatttttg catattttgg tatataaaat gcatatttta caatttttta ttgcatataa       480
     atcctagccc tg                                                           492
//
ID   hAT-N12_BTa repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-255
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 938-938 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to the consensus. TSDs are 5-bp long.
XX
SQ   Sequence 255 BP; 97 A; 41 C; 45 G; 72 T; 0 other;
     cagggtgtct accgtcagta aaaacgaaaa accggaaaat atcaggaaat tcgatgttat        60
     caggaaaatg tcaggaaaat cggtcatgga tcaggaaatt ctgagtgctt caagcatttt       120
     tcaaacattt gattcaattc atcaaatatg ttgatttttt aaatcaaacg agtgtcaatt       180
     tattcgcgcg aaaaatcagg aaatctcgtc taaaatatca ggaaaatcca aaattaaatt       240
     ttagtagaca ccctg                                                        255
//
ID   hAT-N12_DTa repbase;    DNA;    INV; 1212 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1212
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6186-6186 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1212 BP; 443 A; 179 C; 209 G; 381 T; 0 other;
     tagagcttga aaattatcga tgtcagtatc gatattatcg atacttctga tatttttcaa        60
     acatcgatgt ttatctataa catcgatgtt tttctgacgt tttattagag agaaacgaac       120
     agatttcact ctttaattct gaggaccaaa ataactttta atacaaaatc acttaaagta       180
     gggacaaatt accatgcaag aaccgcgagt tcttggtatt ttattcttct ttggtcccat       240
     agatattatg aaatacttaa aagtaggcga aaagggcata ggttatggca aaaaatggaa       300
     aataaaagaa ccgcgagttc ttgggaagag gaggaacttt ggttttttta gtaccaaaaa       360
     caaagtcttg gttgcagcta ccgaccttct gtccgctatt aaaaaatctc aagaaaccgc       420
     gaattcatag cctttgataa gaattggtcg cttttcgaag atcgtttgag cgatttggac       480
     tcaaggatcc aaaaaaaaac aaccgcgaat tcttcagaag aggaggaatt tttacttctt       540
     tatggtatag tatcaattaa agtaggggaa aataaccata ggttgtggca taaaatcgaa       600
     aatgaaagaa ccgcgatttc ttggggaaag gaggaactct cgttctttta ataccaacaa       660
     caaacaaaac gaagaccgtt tgagcaattt tggcaaagga tcaaaaaaaa aaagcaaccg       720
     ggaattcttc agaagaggag gaatttgttc ttctttagta ccaaaaaatg gtatggaaca       780
     aaggtttgtt ctattatttt acataagtat ttcctcataa tatattttaa aaaaaattct       840
     taagaagccg tgaatgtctt tgactaagaa ttggtgtctt tctagacatg tgacgcaact       900
     caactcaatg atcaaacata aataaaccac gagttcttaa gaggacgatc ctttagtctg       960
     aaattgcatt ttaataatga aaaccggaaa ttaaaattaa ataaattacc cgcgattttt      1020
     tctaataata atattaataa taatgcaagt gtattatgca tgtatataat aataatacgt      1080
     ggtattaaca gaattataaa attgttttta atttgtcttt gctttccttg aaaacatcga      1140
     tattatcgat acgataatga taaagtatcg aaaatatcga tactgtcatt tatcgataat      1200
     tttcaagctc ta                                                          1212
//
ID   hAT-N12_LMi repbase;    DNA;    INV; 2679 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2679
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2931-2931 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2679 BP; 829 A; 531 C; 541 G; 777 T; 1 other;
     tagtgatggg aacaatcgaa tgaaaacaat cgattcattc ggttgttgga aaaaaatcga        60
     tcattcggtt gtagtttctc gtatcggttg aattattcat tcattcttct gagtgaaacc       120
     agtcggtggg accaaccgaa tgaaacaacc gattcagtcg gttggactat tcattcgttc       180
     ttttgagtga aaccagtcgg tgggatcaac cgaatgaaaa aatcgacgca gtcggttgga       240
     ctactcattc cttcttttga gtgaaatcag tcggtcggag caaccgaata aaaaaatcga       300
     cacagtcggt tggaccactc attccttttc ttttgagtta aatcagtcga tgggaccaac       360
     cgaatgaaaa aattgacaca gtacgttggc ctcttcatta gttcttttga gtgaaaccag       420
     tcagtgggag caaccgaatg aaacagtcag tcggtcgtag ttttactatg ttggattaat       480
     attcgtttat ttttttcgaa tgaaagtagt ctgtgggaac aaccgaatga aaacatgcga       540
     cacttttgca gttttgtaca ttgactgaat tactcattct ttcttttcaa gtgaaaagag       600
     gcagtaagtt tttctgtcgg ttgaaccatg taatcattat cccaactgaa acgactcatt       660
     agtgttttag cttacagagc tatccattta tttctatgaa tgaaactgac atgcacatca       720
     gataactaca gcagtgctac attataccgc catgtaaaag gggtatgcca aagttaaaat       780
     gcgtattaca atgttcattt aattatgtac tgaatgaagt aacttttcgt tttataatac       840
     acagtaacag tgattcatat tttgttgtag attaaattgt tcgaggtgcc atcaacgagt       900
     aactaattag atgtcatatc gctggagcag gcctgcgatc actttcattg cccaccacag       960
     acctcaaaaa cgccgatcat ctgggcccga tcagattact ttcgcagaca cccacaatct      1020
     gtagaagata agtggccgat gaccacgaag taccgcgggg agcggggaca cgagaggggg      1080
     tgctgcctcg cttgcgtttt cactgctgac agcgccagca ggcgcgcgcc aaactccaca      1140
     caacagtgtc tggcggggcg gtgcgtgcca tcgccgattg ttgtcggttt cttactgtct      1200
     caataaagaa gcgtggaaac tacagggtgt tccaaaatga tcgctacaag tttaatctcg      1260
     catactgtat ctccgaagtg ggaacaggta gaaacgtgcg gtttgcggct tattgttcat      1320
     acatatctaa ggtactagta ggacagagtt aagtatktta actttgagca tatttgctag      1380
     atccaaattc gaagatcact aaaacattag gtattgtaaa aaaaagttta ttaaagtatt      1440
     ttgtataaaa atatttctta taaaaatatt tttgttaatt ccatctaatt tgaaggagta      1500
     cgagaagaca tacaacattt atcagtgctg taaattttct tcagcgcgtc tgtattcgtc      1560
     aacagtgtat gaaaacattc atctcaagtt tcataattat tcactcttgt cacagatatt      1620
     tctgtggtta tcggtgaaac ggtgtggagg tttattccat ccctccgcca tgtaccatac      1680
     aaaatcttag atgaacagtg aactgccact tgttttgaaa gtcaagtgtg caaaatttca      1740
     tcaagatcgg aataaaactc tatattggcg tcgaagtctg gaataccttc tctcatgcat      1800
     caaactaaag tagatgtaga cggtgaccat tctctttctt tgaaggtgaa gagtgaaata      1860
     tatcattaaa attcgaatac aaacggaatt tgtcgaagtt agtaggtaaa gtaccctccg      1920
     ccatgcacct acgaaattta ttgtacacag ttaccttcgc cttgttttaa aggtcaagtg      1980
     tgcaaaattt catcaagatc gcagccaaat tgtggttttt gtcgaagtca gtatgtaaag      2040
     taccctccgc catgcaccga atgaaatttg atgtagacag tgacgttcct cttgctttga      2100
     aggtcaagtg tgcaaaattt catcaagatt ggaacaaaac tgcagatttg catgcaatag      2160
     aaacacacac acggacacac tgctatattt ttaagatttg tctctaagaa tgtttcatgc      2220
     tgaatcacgg ttcatttata cccgaaaagg ctgaaggagt atgcaaataa agtcacacaa      2280
     agtcgatgaa ttaataaaaa catccatata actgcagaaa ccgacaaaga ctttttccag      2340
     tcggttgtat cgcatcaagt gaaaccactc aatgccgaga acattcatat aaaggacaga      2400
     gacttgtttc attcggtgct cgcgcatcga ctgaaaccac tcaaacccac tgaatgagtg      2460
     aaaacattca tatagcggct gcaaccgaca gagactggtt tcattcgatt gtttcgcatc      2520
     gactgaaacc actcaaaccc cgccagtgag tgaaaacatt catacggcca cagagactat      2580
     tttcattcgg ttgtttcatt cgactgaaaa aaccgactga acgaaaaaac aaccgattga      2640
     ccaatcggtt gttaaaaaca gtcggttgtc ccatcacta                             2679
//
ID   hAT-N12_RPr repbase;    DNA;    INV; 460 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N12_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-460
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3353-3353 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to the consenus.
XX
SQ   Sequence 460 BP; 159 A; 65 C; 70 G; 166 T; 0 other;
     caggggtcgg caacccgcgg ctcgcgagcc gcatgcggct cttttatcca aattttgtgg        60
     ctcttcagcc tgtccaaaat aaattgtata tttcaatttt attgaaacaa atgaaaattt       120
     catttattaa agtaaagata ttttttcaaa aagaatttta aatgtgatag gtttgaaatt       180
     gaatagaatt atattaaaat acagtacgta atatatagga ctgccgccat tttcattcaa       240
     acacaggttt agttattatt tatttgttta tttactttgc aatatgtgaa aataaatata       300
     taaaacattt aaatgttatt gaatatcata aaataataat ttgtgaatac aaatgatcta       360
     cagagttttt tacactatca tccttgcggc tcttggtaag atttattaaa attatttaag       420
     gagaaatggc tctctactta aaataggttg ccgacccctg                             460
//
ID   hAT-N13_AP  repbase;    DNA;    INV; 626 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N13_AP.
XX
NM   hAT-N13_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-626
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2113-2113 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 626 BP; 177 A; 70 C; 96 G; 283 T; 0 other;
     cagggttggg attttatagc atttgcatat ttcttatgag atgcttaaaa aatagcagag        60
     taagctaaaa atgtgtttcg tgatacagag aactcaaatt aaaaatttta ttttgctttt       120
     ttttgcatat tttgcgattt tttagttttt agtgcttttt ttggactttt tgagattttt       180
     ttgcattttt acctgttttt gaatcaaaat cggtcatatt ttatgaaatt atattttagt       240
     aaacgtgttt ttagattttt gtcaatcgaa ttattacgat aatttcgtat taggtatttg       300
     gttctaactt ctaatttttg ttatctgctg attttgttgg gttttttttg tcgatttcta       360
     ctgcgattat taatcgccga ttatcaacga acgagcgttg aatgcgttgt atagtcaatt       420
     catttggatt ctgatcagag tgactaaatt atttcaaatc ttaagtaact acctataata       480
     atttgtaagt gattaaaaaa ttattaatta ataaatttcc tttttttttg catattttgt       540
     tgtttttatc gcatatttag cgatatttaa ggtaatatta tagcgcatat ttatgcaatt       600
     ttaagtgcta taaaatccca accctg                                            626
//
ID   hAT-N13_DTa repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-322
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6187-6187 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 322 BP; 124 A; 41 C; 52 G; 105 T; 0 other;
     tagagtcctg catgagtaca cttgaattga caaacaagtc aattttttga aaatagagtg        60
     agtgagttca agtgagttaa cttggatcac ttgtttcact tgatcactcg taaaaaaaaa       120
     caagtgatac aagcacagaa taaaagtgag tgggagtgat aaaattacta agcaaattat       180
     ttaggtgatt cgaaattatt ttatatctat ttattttata ttaaatcact tgtttttcct       240
     tatgaaaaaa taaaatgaaa aaagtgatcc aagttaactg attttaaaaa ttgacttcca       300
     agtacactca tgcaggactc ta                                                322
//
ID   hAT-N13_LMi repbase;    DNA;    INV; 2190 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 19.11, Created)
DT   16-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2190
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2932-2932 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2190 BP; 621 A; 447 C; 453 G; 669 T; 0 other;
     caggggcgta gataaggggg gggggacgag ggggttcaaa cccccccccc cagaactttt        60
     tttcactcgt gctaaaaata aaaaataatt tgtgtaatga atatgagagt tagactgaaa       120
     actttgccaa caaagagagg taccagggtg tctgtaagtt gtaatcgatg cttagttgag       180
     ctttgacttc ttacttgttg tcgggacact ttgtctcgaa tgtcttatgg gtggccttcg       240
     tgaggcctag gcaagcgtcg cgcacaactt tcaccacagt aaatctggcc aattaaaaaa       300
     ataataattg ctcaggtaac caccacctaa ccatcagtaa caatgaacaa gtattgttga       360
     attccagcca gaaacacgct ccacagactg tttaaagtac cgcgcgaggc ttgcctagcg       420
     tgtaacgaag gccaccgtgt cttatgttta ctactgctac caacttcagt gatctactaa       480
     ctttattact acagtagggt ggcgaacttg tacgtaacac agacaaatat attttttaac       540
     gagtcatgtt cccatcctct gcttacaaga agcaacctta ccttcgtccc actactgtaa       600
     atgcacactg atatcacgtt gtaatctcta aagtgtcatt tcgccaaagt agtattacaa       660
     agaagcgacg gatgtctatc ataggaggcg acagtggact ttgttaataa ctgtcgcctg       720
     tcagcttgct catattcgtc agcactgcaa cttcactacg gtaatttggg tttccaaagg       780
     ccgatgtgca ggtgctgaaa cgtaggggag accagggtaa cggcgccacc ctgggtaatc       840
     gcgccacccc agttttatga cgaacggttg gcagtacgag tacgcttgcc agtgttctat       900
     ctccgttacc taccgcggaa ctaattcctg tggtcgccgt ccgtgattgt tgacaggtat       960
     taatcgtgtg aaagaaattg ttagtttcga cgttttggat ctaattttcg agcctgtatt      1020
     ttattgaaat aagtacctct ataggctgtc agtgcttttt aatactcgta ttaacgtaat      1080
     ctgtagatat ttagcttcga tttcgtgtct ctaacctaat tgttttgcaa aatctttggc      1140
     tttaaattga cgttcttagc catatttttc aactggggca atgacgccat ggtggagaat      1200
     ttaggcaaaa tgaagtgtaa tacagatgca tacattttgt gaaatgggca cttgcagaat      1260
     gtagagaatg tagtaggttt gaagtgccaa aaactatacc ggtatttctg acttttgcgg      1320
     tgtcttaatc aagcctaaat tataaaatgt atttttattc caattttaca tcgacaagta      1380
     cttgaagcct tctaaatgtc taatacagaa gagtgataag tataaattac aacggttgta      1440
     acacttattt actactactc actcatcgtg taggtttatc cttgattttc aaatgtatgg      1500
     cgtcattacc ccggaaccca gggtaatggc gccactgcgt atactttcac aatatatttt      1560
     ttaacaataa aacttaacaa aatacatgtc tgaaaaaatt ataataaagt agtattagct      1620
     ggcgaagctg tagtattatt ctttacgaaa aagacacacc tttaataagg taaaaaaact      1680
     ggtttccctt aaggtggcgc cattcccctg gtctccccta tatgtcattt gtctgaaggc      1740
     tttcgatttt ttacgattgc tggcaactga cgacttgagc cagatgtggt agtgcggaag      1800
     gtatttctaa tttactaatc cctacagcga ttacttttgc tgtgaaaatt gggcttattc      1860
     tgtatgtaat gttaaaataa tttatgggaa tatagttggg caacgtcttc gacaacagcc      1920
     agtatttcgg caggtgaacg cccgtcattt tcaaggtatc actataccag aaaagactgc      1980
     tcttcatgtc tacaatcttt ttcaataacg cttcattctt ttatcaacta ttcgcaaaat      2040
     tttgcaaatt aatagaaaaa atcgcaagtt tgttttatgg gggggggggt gggcgtcaca      2100
     gctttggcac ctgtcaactg tgcgagggca cctcaatata gctctggctc tgaacccccc      2160
     ccccagatga aaaatttatc tacgcccctg                                       2190
//
ID   hAT-N13_RPr repbase;    DNA;    INV; 388 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N13_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-388
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3354-3354 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 388 BP; 118 A; 79 C; 74 G; 117 T; 0 other;
     caaggatgag caacacgcgg cccgcgggcc gcttgcggcc cccaagcatt tctaaaattg        60
     aatttatttt atcgactttc tcccatcaat atattgttat aaaattaatt ataataaaat       120
     ggtagtacat actaaaccga aatatttttt tatggcgagt tacttgtcga cgacgttttt       180
     aaacatgcaa tacgaacgcg ccgcgtctgc gcgatttttt tgtgacgaga tacacacttg       240
     tcggtgactt gttcaaacat gcaatacgga cgcgatgcgt ttcgtacgaa gtttcgtaaa       300
     ttattaataa gagttaatct atgtgcggcc cgccaaaaaa aattaaaatt taaattggcc       360
     cattgattaa aaaggttgct cacccctg                                          388
//
ID   hAT-N14_AP  repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N14_AP.
XX
NM   hAT-N14_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-302
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2114-2114 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 302 BP; 86 A; 57 C; 61 G; 98 T; 0 other;
     cagggatggc caacccgcgg cccgccttgg aaagttttgc ggcccgcgac atttatcaaa        60
     tatttacaaa aaaaaattat ttttgtgccg atagaatatt ctggaatgcc cgcgcaacgc       120
     ggtatcttat aattttatat gtggcctaat tttgaataaa aaaatataaa aatatgtgat       180
     tataataata ttttggctga tgaccttttt tttttttttt ggcaacccta tacactgcgg       240
     cccgcgggat tgtaatgtat ttaaaaagtg gcccgcaaga tcatttgggt tggccatccc       300
     tg                                                                      302
//
ID   hAT-N14_DTa repbase;    DNA;    INV; 858 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-858
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6188-6188 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 858 BP; 300 A; 137 C; 124 G; 297 T; 0 other;
     cagtgttggg acatacctag atacttttac ctaggtacgt acctaggtac aatttagtgg        60
     taccttttac cttacctagg tataaaaata attgagtacc ttttacctta cctagataca       120
     gatttgtata tacctttgga attattaagg tacttacata ggtattaaac attgatctga       180
     tttaaaatag ccaaatctga ctgcgacact gtagtatcgt ttcattgtat cgtttcgttt       240
     cgaaattgta atagtcggaa cgcagcatta aaagtcattg gaattcagcc gttctattgt       300
     ttgttttgtg aagttaaaac taatcgcagt tttattttat ataattttgt gcacgtatgt       360
     atgtttccat cactacatca atttatttat gaaaccaaag tgtatttggc gcgcaaaaat       420
     gccgtatgta agtaaacaaa cggcatatac atatgcacaa tatatagtca atgtttctac       480
     atacggaatt tttgcgcgcc aaatatgtac atgagggttt cataaataca ttaatgaagt       540
     gatacgtgca tacaattatt catgccgcgt gttttaaaaa tatatgcaca aaattaaaac       600
     atttaaattt aaatgaaatg aaaagatatt gtttgattaa gacgactaat aactgaaaac       660
     tagtcttatt ttaagtttaa atgattacat tgaacaaaac aaaaaaatta taaaaaataa       720
     aaaatacctt ataaatacct tttaccttta cctaggtact gggaaattta agtaccttta       780
     ccttacctag gtatttattt ttgcccaata ccttttacct tacctaggta aaaaaacaca       840
     gtacctttcc caacactg                                                     858
//
ID   hAT-N14_LMi repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 19.11, Created)
DT   16-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-528
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2933-2933 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 528 BP; 149 A; 94 C; 135 G; 150 T; 0 other;
     cagtggttcc caaagtggtc tatatagacc cccaggggtc tattccaacc tgcaaggggt        60
     ccacgtcagc ggaaaaataa tttgggggtc tatttgttgt aaatggggtc cacgatagtg       120
     gttcacattt aggaaggtcg caaccaaaat tcagaattat tctcacaatg ctgaagcttg       180
     atcctttgta tgtcactgtt cgcttcattg gctaagcgag agagtggagg aattctgtat       240
     tttcggtctc ctgctgcagg cccgtagtca gatttttttt tttttttggg gggggggggg       300
     gaggggagat cagtcaatta tgacgtatat attctaactt gtaaagcatt ttttcactcc       360
     acccttttac agttaaagtt atcaaagtta gtagcactat atgaggcgcg aaaacacatt       420
     tgaagttagg aattcgtaaa aaaattaata cacaaaaggc agggggtcta cacagggcag       480
     aagaagttgg caaggggtct acgagacaaa aaagtttggg aacccctg                    528
//
ID   hAT-N14_RPr repbase;    DNA;    INV; 320 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N14_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-320
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3355-3355 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 320 BP; 95 A; 67 C; 65 G; 93 T; 0 other;
     cagtgatggg caaagtacgg cccgcgggcc aactccggcc cgccgagggt ccatcgacat        60
     ggatagtata tggcccgcta taattacgtt ttgacggtcg agaagtataa agtagattct       120
     acttagtaga ataatagatg cataacctat aggtgaagct aaactagccg cgtagttaca       180
     caagtgtgta atgctgtaat gtttttataa tattatgatt aaaagcttta acacaaaatg       240
     cattttttct ataattctgg ccctcctcta gaatttctta aactttgtgg ccccccatta       300
     aaaaagtttg cccaccactg                                                   320
//
ID   hAT-N15_AP  repbase;    DNA;    INV; 585 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N15_AP.
XX
NM   hAT-N15_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-585
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2115-2115 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 585 BP; 213 A; 70 C; 78 G; 224 T; 0 other;
     gggttcggga cttgttgcat ttgcatattg tttaataatg actgcagaat agtctaagta        60
     agatataaat ttgttttaag tcataacgga ttgaaataca aaaattttaa ttgcatattt       120
     tcgcatattt tgccgttttc tgagcaaaac gcatatttga caaattttgg cagtttaatt       180
     gttatttata gcatatttac gcagttttcg ttttatgtta agtacatatt ttatttaaag       240
     ttgataatat cagaaaatat cttattgtac agtcaaactt tacagataaa caattcatca       300
     tttttatatt taataataat taaataatat attaaaaaaa acccaacctt ttttcattgt       360
     aggagaagac gaagaaaacg aaatcgaaca tatacttcag taatataatg ttgatagtgt       420
     tattgttgtc aaaaaaataa ctaattacaa aaaattttct aaatttaaat gaataaatca       480
     aattttttaa tgcataattg catatttttg cgcatatttc ggttatttta agtgcatatg       540
     tgcatgcata tttccaacaa tttgtgtgca ataagtcccg aaccc                       585
//
ID   hAT-N15_DTa repbase;    DNA;    INV; 832 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   04-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-832
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6189-6189 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs, showing RTGtaCAY specfic.
XX
SQ   Sequence 832 BP; 284 A; 140 C; 140 G; 268 T; 0 other;
     tagggtggac ttattttgta tgaaatttct aaggccatgc tctcacccct tcatatatag        60
     cctttttgta tccttaatcc attaaagaaa gaaaaagtaa aaaataatta gttttaggcg       120
     gtgcgcaacg gctttaaagt ttattacgca tatttcagat tcatctagat gccgtagact       180
     taattttata ctttgacagt attttaaaaa gtatcttaat cactttcccg agctttttaa       240
     caagggatga agtcgttgat aaaattcgag tccctgggag acaattacaa cttaaaaata       300
     acaataataa cgaataatca aggactttta gagtacaact tataaatatt acggtctctg       360
     aaaaataaga gtcaatatcg ttgtatccta aatgccagca ttcttctttg acgaaaattt       420
     ttattggcga acgcaaaagt gatagttaat cttcaaaatt gtaaaataga atctctattt       480
     tattgtgagt cacaaaaaaa aaatggtgag tcggggatcg aactcggtcc tttttgttcg       540
     gagacagaag ctctactggc taggctacgt ccaactgtta atattcatga aataaatttc       600
     tacttgactc ttttattcga gcgaaaccaa aaagttgaca tgttaaaatc tgacaagaaa       660
     tggaatgggg taaattccta gttttacact taatttttag cgaaacttta gggccattgc       720
     gcaccgccta aacgatgaaa taaaattttt ctgttttcgc ataaatttat tggacacaga       780
     aacctaccat ttaagatgct gagctcagtt gaccttaaag aagtccaccc ta               832
//
ID   hAT-N15_LMi repbase;    DNA;    INV; 956 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-956
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2934-2934 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 956 BP; 289 A; 166 C; 190 G; 311 T; 0 other;
     tagggatgca acatcgttga taaaaacatc gatgttcaga catcgatgtt cctgcggaaa        60
     aatatcgatg ttaaaaaaac atcgctctga aaaacgatac atcgatgttt ttccgatgtt       120
     tccatacgtt taagaaatat taggaaaaac acactgaaat gaagctgtgt tgccagaaag       180
     tatctgcctt atttatgttc tttcactagg ctacgaatac acagcgaaat ggcagattag       240
     aatgaaaaag aagttgggaa taaggtttcg ctacctattg cgctgatttt acttgggatt       300
     tacatcgatt tgttcattac atgcgaaata acttgtgttt tgttgacgta ttgcattttt       360
     cttagctgtc gacgtggaga aaattaaaca ttatgcatct ttcagttatt acttaataat       420
     gtatttttaa aatgaatatt catcaatgac gtttatcaaa tcatgtacct tgctgaaatg       480
     aaaatctatg ttatacttgg cttgttggct tttgtctcgg atttttcgtc gacttttgtt       540
     tgatgtttta actgacgttt tgacagtacg atatcagtct gactgggtaa cactgtcaaa       600
     gattcgattc cactgatgtt ggagggtgaa atttcagcaa tgccagcagc ccgtgctgga       660
     caaacatcag attaatcatc agattgtttc atatttcact tacctactat ttcaaaagta       720
     tgaaaacagc gacgagcgac gacagcagga gcaccgcact tgagctgacg ctggctgagc       780
     aactaataaa gtaataatgg agttgccaat caattgttga acgatgtcga tagttttgga       840
     cttctgtcgt cgatgcatcg gcgatatatc gctgttcaaa acatcgatgt taacatcgat       900
     gtttatggac gaaacatcga tgttttcaaa acatcgatgt atcgtttgca tcccta           956
//
ID   hAT-N15_RPr repbase;    DNA;    INV; 623 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N15_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-623
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3356-3356 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 623 BP; 210 A; 109 C; 94 G; 210 T; 0 other;
     cagtgatggc gaacctatga cccgcgggtc agacactgac ccgcgcaagc tttttcactg        60
     acccacaatt gctaggcaac catttgtttg tttacgcggg ttgatttaga ttttctaatt       120
     gtgtggataa tttatattct atctgtattt ttttcaatca cgcattgaca caaaagcaat       180
     ttaaatgcta tctataacct ttagtttgat cattacagtt ctaaaacgca aatgacgaca       240
     aatgcttttg tagtatttga aataaagcaa aagtgtttac aaaatatcaa ataaaatgta       300
     taattttact catattttgt ttgttaaaaa aatcgacaac ccaaagcaaa taaccatatt       360
     tagatttttc ttcagataaa acacactttt gtaaggtttt gttcagttat gtttgtaaaa       420
     agagacttcc atagcacttg tttcgtcccg ttttacccgt taagccaact gaattttaaa       480
     gatgtttagt tttgaaaata ttcagtttaa aatttttaaa cttaactctt gtgcaaatgg       540
     gcattagtga cccaagagct agtactaaaa aaaaaaaaat gaacaaaatt tgacccacgt       600
     ctcaaaaagg ttcgccatcc ctg                                               623
//
ID   hAT-N16_AP  repbase;    DNA;    INV; 615 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N16_AP.
XX
NM   hAT-N16_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-615
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2116-2116 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 615 BP; 253 A; 76 C; 92 G; 194 T; 0 other;
     cagtgtttgg aaggaacgag ttccaaaagg aacggattcc tggaacgaat tcctttttaa        60
     agaacggcac gatgaacgaa ttccttttta taaaaaaaga acgagaaaat gaactagttc       120
     ttttttttaa ggaaaaataa caaaattgtt cgttcctttc tagttccaat aatttacaca       180
     gataagtatg taaaaatcga aattaagata tattttttta atgtgtataa tgtatattgc       240
     taattagtga tcgttatcga gtatcgacgt taagacaatc gacatacgtt agccaaaaat       300
     ttaattttga agaaaatctc aaaatatata ataatatatt gcataaacat ataaaatatg       360
     tacctacttg tagttatata ttataaataa aaattaaaga agtatgcata atacgaaaaa       420
     aaaaacatta atgattaaat aagaattttt attttatttg gaactaaaaa aggaactcgt       480
     tcattttcca aaggaacgac aaaggaacga attctttttt tttttaagga acaaggaacg       540
     gaacgaattc ctttttttaa aaaaagaacg aggaacggaa cgaattcctt tttataagga       600
     actcgccaaa cactg                                                        615
//
ID   hAT-N16_DTa repbase;    DNA;    INV; 1215 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1215
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6190-6190 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1215 BP; 379 A; 200 C; 205 G; 431 T; 0 other;
     cagagcttgc aaggttcggt caaccttttc aaagtgttag gaaaaaacct gtcacaaaaa        60
     accctatgac aactgggtgt gagctaaccc cttaaaaggg tttttgctta acagatgtta       120
     cgctcagagc aaaacccttt ttttcagagt tatttcggtt tcggtttcta ctgactactt       180
     tgctcggtct gttaaggaaa acggtctttt gtgaatgtat gagtgtgtat gtgtgacctg       240
     ttcagtaatg cttcagtcgt aacattgctt tttgattatt aaaattcaaa agggtaaggg       300
     aaaatacgta atgtgtattt tctaaagctt aatctgtaag attagcccat ttaccattaa       360
     attccaatat tctacatatt ttaaataatt tacgattcca aaactccact tttggcatat       420
     ctttcttatg tagtaattaa taaccaaatc cacgtaataa gaagcgaatc ttttaagctg       480
     caagaaaaat tagagctttt taacaggtta aacctccttt agcagtttca aattttgttt       540
     atgtagcttt aaatcaattc ctaactattt aagaatatct tcacaacatt attcagtttt       600
     attcaaaata tttcgaaaga tttgaaggaa cgcgcgatcc attttgtagg aataggctta       660
     gttggaatac tttgagccat tttttatctt aagacttatg gtagttctca tttattctta       720
     tggtatagct catttgaaag gtaattcgtt tctttatggc atttcttatt aaagatagtt       780
     ccttatatag tcaattaata tattgaagca aacaaaaaaa tagcagctaa cctatattca       840
     gaatacaatt ttatatacat ttatatgtac aatgcaattt tagaattatc ttgatttcct       900
     atgtaaaatt tatgcacata tcacagcagg cctatacttt ttcctttcta gagaaaaccc       960
     atttttttga cttttattta acagtagtct ttcagaaacc cttttaggtg actgttaact      1020
     taaaagggtc tcaccgagtg gttattgaaa gaccgattgc tttgttcggt tgagccgaac      1080
     ggtcggaccg aaaccgacaa gcaaaactaa aaaagggttc cgctcagaga gagagtttgt      1140
     gagcaacatt tttttcggtt ttgtcgagat taaactgcct caggaaaatc ggttgacagt      1200
     tatttgcaag ctctg                                                       1215
//
ID   hAT-N16_LMi repbase;    DNA;    INV; 1892 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1892
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2935-2935 (2014).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1892 BP; 560 A; 395 C; 402 G; 535 T; 0 other;
     cagaggcggt tcgtcctacg gcgcaacgga gcaatgaacc cccacagaaa tattcgcctc        60
     tgagaaaact ttacagtata taacgatgtt aaactttaaa taacctactc tcccgccttc       120
     ttgacggata attatttagt aacgtatatg aacctcccta ccgacgtctg cagtcaagtt       180
     cgaaactggc ggtcagctct tccgggcctg cttcggcctt ggcgcaaaat caagttctgc       240
     acccccagcg accgcattcc agccactgag ttccgtggcg aggggtggag aagggagcgg       300
     gggcaggggg tgtctcctat cctgagcatt ggagcaacgc tccgtcgtgt atccgccaaa       360
     gcctccactt ccccccctgc tgccgcacct cgccagcgtg cagttcctct tcctccccag       420
     ttcttcagcc aacatgacac acaaatagca gaatccgaaa ctaattcata tctacactct       480
     tctgtagcat tataatgtct cttgttgtca ttgatccctg ctagcagtta agtttcttaa       540
     acttcaataa taagtagaat ctagttagca acgacagaca agagtgttct gttatttgtt       600
     gcagtgaagt taccaacact gtggccagct tttacagctg gtcacgcacg ggcgcgagga       660
     ttcgatatgc agttgtgagt ttgaagacgt gagttgtcag ttttgtagtg tcttaattgt       720
     gaagttaata tgtgtgataa tacagtgcag aggctaaggg agataatttc cctttcactt       780
     gaagagaagc ttcgtatcaa ggacctaggg agaccgacac cagatatcaa gttagtaaaa       840
     aaaactaata ataaaagtaa agaaattgta agaactttca aaccagacat ttatgggaaa       900
     gtagattgga tatgtggttg tgaaattaca aacaagttgt actgttttcc gtgtctgttg       960
     ttcgccaaag aaaattctgg gtgtgaaaca acttggacgc taaaaggcgt tgacgatctc      1020
     ggacatttaa cacagaagat aaagaaacat gagcgttctg catcacatat gactgcgaag      1080
     ctagagcaca accttttagg gaaacacgat attagacaac aactggacag tgcttacagg      1140
     cagtcagttg aaaggcacaa tgatcagatt cgcaaaaatc gttacgtgct ctctaaaatt      1200
     gtggattgca ttaaattttg tggtgctttt gagctcgcac ttcgtggaca tgacgaacgc      1260
     agtgattcat taaatccagg aattttgctg ttgcaacaat ttacgtcgac tcaggaggat      1320
     gtagaagaag aagaagttat tgaataagtc ctgagattcc attaaaccag taaagtagat      1380
     cgtggagtag gcctaccggg gaaaccacgt taaaaaaaaa ccgcgccaag tacactacct      1440
     cataggtggc gtggaaacgt gtgcatataa ttgagagtac aactttaaaa tggctttttc      1500
     tcagaaacgg taaatattag ggaaaaaatg tcagaacagt ttttgtagat agctacacaa      1560
     tctacaattt ttgtctgagc tattttcatc ataaaactaa ccgtttcgcc aaaaaataaa      1620
     acatttttgc gaaccttgac cttgtgtaaa attttttgca cacacgggat tgatggggac      1680
     ttttcacaat ttcattataa tggtatccca aacgtttatg caaattttca gcttgctggg      1740
     aattaatgca agggtgaatg tctattttga ccgggatatt atttctgtat agcaattatt      1800
     ttgctacccc ttttttttct tttttgctgt ttggaatttt cttatccatc ttcctttgaa      1860
     ccccctagaa aaacctacac gaaccgccac tg                                    1892
//
ID   hAT-N16_RPr repbase;    DNA;    INV; 840 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N16_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-840
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3357-3357 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 840 BP; 286 A; 131 C; 146 G; 277 T; 0 other;
     cagcgtttcc caaagtgtgg gtcgcgaccc ggcaccgggt cgcagaaaaa ttcagctggg        60
     tcgtggcaaa aattgtaaaa acacaaaaaa tctataacat tttgctctaa atttaatatt       120
     tttcgaaact ttttcaagta ctgcaggtgg caacccttta ccaccgtttc ctaccggacc       180
     gtttaaattc ggatgctctg attggctgat ttcgattcgt cattcagtgc cttctgtcga       240
     tattgaaaag gaagaaatgc ttaatcttag tgaacaagaa gttgataatt taattgaaat       300
     ttcatgcgac accgatctta aaaaagtgtt tgaaactgta ccactaatta atttttggtt       360
     gcgctgtcaa aaggaatatc caagcgtaag cgaaaaagcg atacaatttt taatgccttt       420
     tgtcaccact tatacgtgtg aaactgcgtt ctcagccttg gtgtacttaa aaaataagta       480
     tcgaaacaga ttggatgtcg aacctaattt gagaataaaa ttaacatcat taagtcctaa       540
     tttgaaatta ctatgtgatg aaaaacaaca tcatccttcg cactaaggtc aaaatatgta       600
     aaacaaaatt tactttaagt tttaaatgaa gataatggat tgtctttaat tacttatgtt       660
     tttgttatat aattattttg caatttttgt gtatgaaata aacaaacaaa taacttgaat       720
     tttgattttt attaaaaaat aaaatttgtt ttgtaaataa atgttttttt tataaggtgg       780
     gtcgcgaaaa aatttaaaat ctcgtaccgg gccgcggtca aaaaagtttg ggaaacgctg       840
//
ID   hAT-N17_AP  repbase;    DNA;    INV; 297 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N17_AP.
XX
NM   hAT-N17_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-297
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2117-2117 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 297 BP; 99 A; 39 C; 66 G; 93 T; 0 other;
     cagtggttct caacctgggg ggcgcgcccc cctagggagg cgtgacaaaa tttcaggggg        60
     ggcgtgaaaa tgttgaaaaa aaatgttaat tgtatattta ataatagtta attttaattt       120
     taaattataa ttttttttca ttgaagttgt attcatatta atccaataac caacattaaa       180
     gtatagttta catataaata ttatgcatac atcaatctta tagtagtgag gggggaggcg       240
     tgaactcata aaatagtttg aaagggggcg tggacctcaa aaggttgaga acccttg          297
//
ID   hAT-N17_DTa repbase;    DNA;    INV; 572 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-572
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6191-6191 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 572 BP; 217 A; 64 C; 67 G; 224 T; 0 other;
     cagggatcgc acgtaagaat tactttttta aaaaaattga caaataagtc ttatttttca        60
     atttttatta taaaagttga caaataactc ttatgcttca attttgttga tttttataat       120
     aaaaattgaa gcataagagt tatttgtcaa cttttataat aaaataaaga ttgaattgaa       180
     ataactcttg aactgtgggg tacattggtt taaaatttat atatgtataa tctacgcttt       240
     aatacctttc tgttgatatg ccatatgtcc ccaacatatt ttttataata ataatatttt       300
     ttacatcatc aaaaatattt tggggacata tggcatatca acagaaaggt attaaagcgt       360
     agattataca tatataaatt ttaaaccaat gtaccccaca gttcaagagt tatttcaatt       420
     caatttttat tataaaagtt gacaaatatt tgttgatttt tataataaaa attgaagcat       480
     aagagttatt tgtcaacttt tataataaaa attgaaaaat aagacttatt tgtcaatttt       540
     tttaaaaaag taattcttac ttgcgatccc tg                                     572
//
ID   hAT-N17_LMi repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 19.11, Created)
DT   23-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1648
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2936-2936 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1648 BP; 503 A; 320 C; 299 G; 526 T; 0 other;
     cagggccggc ggaaggggaa aatatcaccc gggcaaagaa tccatatggc gccccctaca        60
     acccattggt attactgact ttaaatttgc tatgctacct tacagatagc tgcttttaaa       120
     ggataactcc ttgaactcta taactataag aatcaattat caaactgagt aagatcttaa       180
     cttttgtcag ttaaatacac agagtaagtt ttggttaacg atatacgaaa caattattta       240
     cacatgagca tgcagaatat tctacgtcac tgattagaaa tttacagaac gattcaagaa       300
     acaacgattt atataaaatt aagattgatg atgcgataca gcatttattt acacatatat       360
     acataaacaa ccttgttaac tgcgaaagag aacacatata tgaacaaaag aatatacaaa       420
     tatattttgt aacagcattg tacaaagatt tcgtaataca aataatacaa ccagtaatat       480
     aattttatat ctttatacag ttttaatgca aattgtcctt tgagttgttt acaaagctaa       540
     gtaaagttaa cttttcgtgc ctttttctct gcaaagtctt taattaaagt tggttaatac       600
     acatctaacg agtaaaagtc ttatcgcttt ggtacatgta tcaagcatca gtgttggtat       660
     agaatgtaat tattgctact tatatcaatg gggaaagaac tttctttgag cctgaagttc       720
     gccgcctatc tgagaggccg ccaccctacc caccccagcc tgctaagacg ctacgtgtgt       780
     aaacacctct tctctattaa acgtaataaa acgaaaatac gttacgtaat gtaggcctac       840
     ttacctgtac tgtgttgtta tcttctggaa tatttgttga tttcttgctg gtttcctcat       900
     tctctggttc tacgttttca tttccattat tgtctgtttc aggagtacga aagaatttct       960
     ttaatgctgc tgcctgtttc tcattttcag ccgctaattg tgctcttctt tttctgtata      1020
     catttccaga aggcttcttt tttccgacat gttgataaag aacacattaa cgcaacgatt      1080
     cttctactaa gagtcgaaat tcaggagaca aaagaagaac acgcacacca tgaagcctgc      1140
     actacatgta catgacttct gatttataat tttctttcac gagacatttg acagtacaaa      1200
     caggactaat ttctttttgg ttgccgataa ctcaatattg tttgtgtgta ttgttagagc      1260
     ggccgacata gctttgtcgc aaggagtgca attgtcggca ccgcggcggt tgtaattgtc      1320
     agagcgtgtt attgttgctc aaaactccca actctcaaca atagccttta gctttgtcag      1380
     cggagatttt tttatagaca aataaggtga agggatgaag ggatttcctt tataggagat      1440
     tcaagaagaa accggggttg ttataaagag tgaggcctat ggcatgaggt agtaaccaat      1500
     gttgctacac aatttatgaa aaagttaatt tttagttcac tgtttacaat aatataaatt      1560
     tagcaaggat tttggcgccc cccaaactcc cctaaaattt ggcgccccgg gcggtcgccc      1620
     ggctcgcccg gcccttccgc cggtactg                                         1648
//
ID   hAT-N17_RPr repbase;    DNA;    INV; 904 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N17_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-904
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3358-3358 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 904 BP; 292 A; 141 C; 174 G; 297 T; 0 other;
     cagtggtttc caacctgtgg ggcgcgcccc cctagggggg cgcgagactg ttgcaagggg        60
     ggcatgcagc tgtttccaaa atatcatttt cgaatacaaa ccaaaaaagt cgaataggtg       120
     tcaaaaaaaa tgaatcagca aaataggtat acgtaatcca caatcctcgc cgcgaatttt       180
     tcgggtacaa atgctaaaac atccatccat actcttgctg gaacgaaaac atctcgcttt       240
     cgcgtttgga gccgagcgcc ggcggggcga ttagaaaccc gtttgtgatt gaaaaatatg       300
     atgattttgg ccttacgaca gcagagcagg aaatgataat tgacttatct agtgatagca       360
     cattaaagca gatgtttcaa gacgaaaata atattgttac gttttggcta cgagtaaagg       420
     acgattttcc tactttgaca aacaaagctt tagaaatttt attgccattt gtaacatctt       480
     acctatgtga aactggtttt tctacagtag ctgtcttaaa aacaaagtat cgatctcgct       540
     tagtgattga aaaggaactg agaaccgcga tttcttcaat gataccacgg tttgagaaaa       600
     tttgtgctga aaaacaagct caaccgtcgc attaaatttt tataatgttg tattaattat       660
     atattttttt ttttgtattt ttgtaagatt tgtttttatt acatttaaaa ttattatttc       720
     ttataataaa taattatttt tttatgtata tttttacata atattgtata ttattttgta       780
     gcccattaaa taaattataa tatcagttga gtatttatga aattagattg ttagaaaaat       840
     taagggggcg caacaatttt ttttttaaag gggggcgcag gtacaaaaag gttggaaacc       900
     actg                                                                    904
//
ID   hAT-N18_AP  repbase;    DNA;    INV; 815 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; hAT-N18_AP.
XX
NM   hAT-N18_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-815
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2118-2118 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 815 BP; 305 A; 120 C; 113 G; 277 T; 0 other;
     actagggccc ggatttatat gcaataaaaa tctataaaat atgcggattc atatcataaa        60
     tatgcaaaaa atatgcaaaa tgattttttt tacaaattaa caatatatta tgtataaaaa       120
     ttgtttatta ataaaaaaat gcaaaataac atttttaatg acattgtgta agtataaaag       180
     tgttataaat taattaaagt attactattt atattaaatt attattattg gacgagtacc       240
     agcatgaagt aataaatatg gatttcaagt tttcgaattg aaaactccta cgattatctc       300
     gaagcatact tttgtacttg gaaaaacttc tttccacgtc acaagataca attggtgcat       360
     atttaaaact cgataaatct tcaactgaca gttcctcgtc ttcatcacat tcagttacct       420
     cgccgttgat tataccatcg atttttttga ttgttcgacg tgtttgggta ataataaatt       480
     taccactaga aaatccaata tttgtcgtca ttcgtcggcc gtcgataacg atgatgtcga       540
     ttgacgatca cttatcgatg tataatgtgt tatttacaat cgacagtagg tatctttaca       600
     gacgtaaatt ctatgaattg tagaatatgc aacatttatg caactatcaa taaatatgca       660
     ataaatatgc attttcattc aaatatgcaa aaatatgcaa aaaaaaaaat tgaaccatag       720
     aatctacgca ttacgaaacg tcgacattta taatcaaaat tattctaggt gaattgtaga       780
     agaacatgca tttgcatata aatccgggcc ctagt                                  815
//
ID   hAT-N18_DTa repbase;    DNA;    INV; 752 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N18_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-752
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6192-6192 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 752 BP; 265 A; 124 C; 115 G; 248 T; 0 other;
     cagggaccga aaataatgat tatttttttt gagtaaaaaa taaaaatctc catttaatga        60
     ttattttgta agcaaaaaaa atatcgctca gaaataatga ttattttgtg agcgatatat       120
     ttcgctcaaa aatatcactc aaagtgggat tgcatccgtc ctacgcggaa ttttacaaag       180
     atttaaatgt gctcttgtag gtagaaccac ggagcacata ttccgttaag aaaaaaataa       240
     attttctttg tataaaccgc ttaaaaaaac aaaaaaaatc tttttgtata aaaacacttt       300
     ctgtgggaat cgaactcgtg cttacagctc ggtggaccaa cacactaaca cccagcccac       360
     atgtcgggtt ggatctaagt ggaatagttc ataacatctt gttaagtcgt tttactaata       420
     aataaatgac ataaagttct aaggttgata caacttgttg tatttaagca tacctcatgt       480
     caactaaaaa ccgcgtttta aaaagtttat acaaagaaat caccttcttt tattaactcg       540
     atgtgtgctc cgtggttcta cctacaagca gaaatttaaa agtttgtaaa attccgtaca       600
     gaacggctgt aatcgcactt tgagtgatat ttttaagcga aataatatcg ctcacataat       660
     aatcattatt tctgagcgat atttttttcg cttacaaaat aatcattaaa tggagatttt       720
     tattttttca cttataatga ttacggtccc tg                                     752
//
ID   hAT-N18_LMi repbase;    DNA;    INV; 1448 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 19.11, Created)
DT   23-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1448
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2937-2937 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1448 BP; 410 A; 320 C; 293 G; 425 T; 0 other;
     cagagctttc caaactgggt gtcgcgacac cctggggtgt cgcgtagtag tatcaagggt        60
     gtcgcgagac taacaaattt agactctaaa caaaaaaaaa acttgtcata aaataacaca       120
     aaatatcctt ctcttcatac taccctgaag actcgcctgc agctaatcat ccttctcttc       180
     attcagtgca ccacagatca cgtattaaag gaatgatcgg tcactcgatt atccggacct       240
     cagttatagg gattcgcgat tatccggatt gtcaaccgcg agtaaatatc tttgttgtct       300
     ggtccgagca tgtacaacat tacccgctgg aactacccac cgcatcccac accagttgcc       360
     agattccagc aaactgcgca tgcgcagagc tgctgctgat actcgataac agctcttccc       420
     atgcgcagtt tgctggaact ggcagctgct tgaacgaacc ttcactgtag tctgctttcc       480
     ttctcaaaaa gctgcacctg agcgtttttt aatggattta tcaaagccac gtcaccctcg       540
     gtagcgtttc ttacaattaa atgtcaatca atgacacagt ggctgtaaaa gctgtcacag       600
     attgtaaaag cagtcacaat tgtccactga ctaaagctat tcagtagcga tgtttagtat       660
     ggagtatggc cgggtgatta acggagagta gtattttaaa tgcagtgatc gttggttcga       720
     accctggtat gcgttaatat ttttttctct cagtttcctg tatgtaacag attctgggac       780
     cagaaatgac attcatattc ttacttgtca caaatattta tccatttttt ccgaatatgt       840
     cgggacttcc gaggtcgtgg tgaagcaaga acctaacaat agaacttaaa taataattca       900
     tcacttgtca taaatacatc ctctttattt ctgaaaataa tgtgataata ttgaactgaa       960
     agggaacagc cactgtgctg tctaaatcag aaatccgagc agctaatttc cagatgccgt      1020
     tttcaatcga tccagcaaaa ccgtatctgg ccctgacatg tacacacgac agcgaaaaac      1080
     ggtttccgaa attcagtttt cgtgtttcgg aagttgggtc gcatgtagaa gaagcaagta      1140
     ttactgtgtg agttaggcat tgttgtctgc ggtgttactc tgttgtacat ctccgtagtt      1200
     cctaatgttt ccttttcttg cgatgagtgt acgtaattgc tgcagtcagg atcaacatta      1260
     aacatgtcaa tgcgtacgag gatttcagtt tcgtttacaa actacattta agcgatactt      1320
     tatttcgccc ccccccccgc tagaaccatc taaattctac catatgtatt tatattagtg      1380
     aaagggtgtc gcgcaaaact gtaagctata aaagggtgtc gccatgaggg aaagtttgga      1440
     aagcactg                                                               1448
//
ID   hAT-N18_RPr repbase;    DNA;    INV; 956 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N18_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-956
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3359-3359 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 956 BP; 321 A; 162 C; 194 G; 279 T; 0 other;
     cggtgtttcc caacgtgggg cccacgcccc ccaggggggc aatttgatag ttaagggggg        60
     caattcgaaa atggactcga cacgacttta accctttcgc tccgggccat ttaaatgcaa       120
     tgctagatat cggtgccaaa tttaacaaaa aaagcaaatt cttaaataat tgcggtaaat       180
     aattattagg tataattccg tttgacgaga ccaaaatatc aactgggtga ttggcgtcgt       240
     caagtaaact tcgtccgggg ttcaccgcgg agcgtgcagt ctgccgcggg gaaccccgga       300
     cgttttaaaa actcgctaaa cagcgcagtt gttggcactt aattggccca tcgctgcata       360
     tcaaatatgc agtatcaaga agaactcgca gaattgcaaa atgatgagtc agttaaaact       420
     ttatttaata taaaaggagc gatggcatgg ctttgtgagg aaacagaaat caaataccta       480
     aattcaacca aatgtgcaag aaaactattg ctaccgtttc catcttcatt tttagctgaa       540
     tgtggattta gtgctgtaaa tgatttactg gtaaaaaaaa gaaatcggct ggatataaca       600
     caacgtggag acttgagact gcagctaacc aaattggaac cttatataaa atctctgtgc       660
     agcaagcatc aagcgcaagg atctcactaa attaaaataa taaattaata tagaaaaatc       720
     tgtattaaaa ttatttggaa tttgaatttc agtttttcat tatatgtttt gaaattttac       780
     ttactgtgtt ttgttaacaa tttcagagtg atttcttcct agaacctatc atttatgttt       840
     cttaagtgaa cgaatcaatt ttttaatgtt aaaaattata tatgttacat aggggggcat       900
     aaaaatttta taaaggttaa ggtggggcat gacacaaaaa aggttgggaa acactg           956
//
ID   hAT-N19B_RPr repbase;    DNA;    INV; 1145 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N19B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1145
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3360-3360 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1145 BP; 380 A; 206 C; 184 G; 374 T; 1 other;
     caggggtggc caacaagtcg atcgcgaggc cagttttggt cgatcgtcga tcgctcgcaa        60
     tgtctggggt ggaattccgt gtaccatgga ctttgaagcg aaaatgaaat ataattttac       120
     aaactgactt aattcttaca agccagaaaa tttgaagaag atttttggaa atatgtcaac       180
     cgagaaaaat atcccagtat caccaaatgt agcgaatata tctattcttg tttcggatct       240
     acatacctat gcgaatcggc attttcatac ttgaagctaa cgaagactaa acaacgttct       300
     gtcctgactg attcccatac tgaagactca ttattattat ctttgtcagg atatacacct       360
     aattatgatt ccttggttag agacatgcaa actcagtctt cccattaatg ttaaggcaac       420
     aaagtaaatt ctaaatctgt ctttatctgt agctactttg aattaataaa tattgttaat       480
     aattatccat gttcttttaa ttcccctgga tgtgagtttt ttggcccttt aaataattat       540
     tgttgttgtt ttttacgtag gtagataagc cgtatatcta tatttcagta cgaggtgtac       600
     tcagcgagct attgatagat tagcaaaaag taagtcatat tattctttca tgataaattt       660
     tcctggcccc aaaaaaaacg cgaaagtgaa atattgaaat caaattatca gccatactgt       720
     gcatttttat aacaactttt tcatatttac gaacaaatag tacaacaact tatacattgc       780
     agttgataaa aaaattaaat tgcattttaa gttagtaaaa atctatcttg aaaaagtgtc       840
     ggaaaatmga attttttagg taccgcatgt acggaatgct gctatcaaaa gttgggtctg       900
     gaaatttatt ttcttcatga gcctatatct cgaaaactta ataagtgatt taaaaaaata       960
     atatatttta cttatctacc catacctcgc tggaatgcac cttatactga aacacagtgt      1020
     ataaacatag tatgcatttc acaccccttc ttccccctta gactacgcct atgacaacaa      1080
     gtcgatcgcg acacactttt aagataaaaa gtagatctta tatacagaaa agttggccac      1140
     ccctg                                                                  1145
//
ID   hAT-N19_AP  repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   03-FEB-2015 (Rel. 20.02, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   DNA8-41_AP; hAT-N19_AP.
XX
NM   DNA8-41_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-349
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 1971-1971 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
RN   [3]
RP   1-349
RA   Bao W.;
RT   "Renamed to hAT-N19_AP.";
RL   Direct Submission to RR (02-FEB-2015).
XX
DR   [3] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 349 BP; 120 A; 53 C; 67 G; 109 T; 0 other;
     cagaggttcc caaactgtgg gtcgcgaccc aaaagtgggt cgcgattata tttttggtgg        60
     gtcgcgctat aatttgatat aatacatatt tttcgttgat gttcaaagtt caaatacagt       120
     ttttcgttaa tcgttatctg cgagattgac gattacgagt ttacagcacc gtatcaaaca       180
     gattaatagt tatacctatt gaaaagaaag cgatttatct gaaacaaatt agtgttagta       240
     agtacctaaa tacctaaaaa aaaaaaaagg tcattcaatg tattgtgggt cgccaaattt       300
     taaaaaattc tcaaaatggg tcgtacaata aaaagtttgg gaacctctg                   349
//
ID   hAT-N19_DTa repbase;    DNA;    INV; 1881 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   06-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N19_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1881
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6193-6193 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1881 BP; 700 A; 232 C; 236 G; 713 T; 0 other;
     cagggatcgt aattattatg atttttaaaa taaaaattag aaaataataa ttatttgttg        60
     atttttatag aaaaaattga aaaataagtt ttattttcaa tttttataat aaaaattgaa       120
     aataagtctt attcttaaat ttttattata taaattgaaa ataagtctta ttttccaatt       180
     tttataataa aaattgaaaa taagtcttat tctccaattt ttattatatg aattaaaaat       240
     aagtcttatt ctccaatttt tattatataa attgaaaata agtcttattc tccaattttt       300
     attataaaaa ttgaaaataa aaattgaatg caaatatctt ttaaaccaat ggaatatggg       360
     ccaaaatcta aaaacaggat tgatcttcga gtcaatacct ttcatatgag ctatgacatg       420
     actatgtcca aggatatttt aaggacttat agcgcctttt aatgttttat atatgtaact       480
     tctatgttcg gtggaagtac atgacgtcaa aaaaaaccat ttagtaccag aaaatccaaa       540
     tgataagaat aaatatccca gtcgaaatgc acctgtccat ctgtctgatt ttgcataaag       600
     taattaaaaa atgaaagtcg cgaattttcc aattatttat aagtatattt agttaagtta       660
     agttatgtat aatccacaca aataaatcct cttgttccta agaattcgcg gtttctaaag       720
     aatcgacata gaatacatat ttaggtatct gaagtaaagt tatgtaagat acacaaaaat       780
     atatcctctt gttcctaaga attcgcggtt tttaaaaaat tgatctaaag atgtattccg       840
     cgaattttta ggattagctt gagtggatta tacacagttt aactaaagag atcaattttt       900
     taaaaaccgc gaattcttag gaacaagagg atatattttt gtgtatctta cataacttta       960
     cttcagatac ctaaatatgt attctatgtc gattctttaa aaaccgcgaa ttcttaggaa      1020
     caagaggata tatttttgtg tatcttacat aacttacttc agatacctaa atatgtattc      1080
     tatgtcgatt cttaaaaacc gcgaattctt aggaacaaga ggatttattt gtgtggatca      1140
     tacataactt aacttaacta aatatactta taaataattg gaaaattcgc gactttcatt      1200
     ttttaattac tttatgcaaa atcagacaga tggacaggtg catttcgact gggatattta      1260
     ttcttatcat ttggattttc tggtactaaa tggttttttt tgacgtcatg tacttccacc      1320
     gaacatagaa gttacatata taaaacatta aaaggcgcta taagtcctta aaatatcctt      1380
     ggacatagtc atgtcatagc tcatatgaaa ggtattgact cgaagatcaa tcctgttttt      1440
     agattttggc ccatattccc attggtttaa aagatatttg cattcaattt ttattttcaa      1500
     tttttataat aaaaattgga gaataagact tattttcaat ttatataata aaaattggag      1560
     aataagactt atttttaatt tatataataa aaattggaga ataagactta ttttcaattt      1620
     ttattataaa aattggaaaa taagacttat tttcaatttt tataataaaa attgaagaat      1680
     aagacttatt ttcaattttt aatttaaaaa ttgaaaaata agacttattt ttaatttata      1740
     aaataaaaat tgaaaaaaaa ggtttatcac gttttcccat ttgccgaacc atactaagta      1800
     agtggttttt ttcccttatt ttttggacgc tattttgact atcaattttt ttaaactcat      1860
     aacacttatt tgcagtccct g                                                1881
//
ID   hAT-N19_LMi repbase;    DNA;    INV; 1187 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 19.11, Created)
DT   24-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1187
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2938-2938 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1187 BP; 331 A; 249 C; 278 G; 329 T; 0 other;
     cagaggtggg caatgagcga gccgcgctct cggagccgcc tgcctgagcg ggagcagagc        60
     cgcgagcagc tggcgtccat cacgtagttc ctgctgaaaa gactagatgg cgttatgcgc       120
     agccaacgcg ctaacgtagc cgcagaaatg cacctggctg agtgcgttat aaaataactt       180
     ataaagataa tagtgcaaac tctttagtat ccaactcgaa tgaacagatt ccactgctag       240
     gggtatctcc tgaaaaatgc tattatgttt ataagtaagt aacttataaa cataatactg       300
     gaaactcttc tctaaaacgt ccagcgcgtg cagtcgagcc ggcaaatatc ttataaagat       360
     aagagcgatt ttttttttgt ttcagaagac accgctaaca gtgccatctg ttagttcgaa       420
     ttttgtactt cagggttttc gttataatct atgatattac gttatggtac agtacgctgt       480
     ggagttgaaa tggctagtca aatcggcgcg gtaaagcggc gttctatttt ccagttcaac       540
     tctagttggg agtgtgatta cttgttcact gaaagcgaag gaggagcaaa atgtttggta       600
     tgtggtaaaa tactaggcat aaaaaagtac aatttagaac gccactatag aacacatcac       660
     ttcaaccagt atggaagtgt agaaggtgaa atgcgactta atcttcttaa taatctacgc       720
     gaggaaggaa gtaaagtaga ggtatgtatt ataatgctgt acctacttac gagataactt       780
     aatcacagtg ttttgtttaa taaaaccaat tttcctttga aatgacaact ctgttaattt       840
     cttacacagg aatgtgatgc ctcatcctcc gatgcagctg ttcgtgctag ttacagaata       900
     gctttgctga tagcccgtac ttcccgacca ttttgtgacg gtgaatttgt gaagcagagt       960
     ttggaagtcg tagcagacga actatgtcca cagttatcac gttctttcgc aagtttgagt      1020
     ctgtcgcggc gtactataac tcgccgtatc gaacgtttgt caggtgcgcc agcaagcatg      1080
     cagacctcta gcggcaacta ggataactac cggccgagcg cgaacgctgc tctttttccg      1140
     gcctgagccg gagcgctgct cattgagccg atttgtgccc acctctg                    1187
//
ID   hAT-N19_RPr repbase;    DNA;    INV; 822 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N19_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-822
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3361-3361 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 822 BP; 259 A; 154 C; 144 G; 265 T; 0 other;
     caggggtggc caacaagtcg atcgcgccgg tcgatcgcga ggccagtttt ggtcgatcgt        60
     tcgatcgtcg atcgctcgca atgtctgggg tggaattccg tctaccatgg actttgaagc       120
     gattgtagaa gaactttaga aacatattgt taataattat ccatgttctt ttaattcccc       180
     tggatgtgag tttttttggc cctttaaata attattgttg ttgtttttta cgtaggtaga       240
     taagccgtat atctatattt cagtacgagg tgtactcagc gagctattga tagattagca       300
     aaaagtaagt catattattc tttcatgata aattttcctg gcccccccaa aaaaacgcga       360
     aagtgaaata ttgaaatcaa attatcagcc atactgtgca tttttataac aactttttca       420
     tatttacgaa caaatagtac aacaacttat acattgcagt tgataaaaaa attaaattgc       480
     attttaagtt agtaaaaatc tatcttgaaa aagtgtcgga aaatcgaatt ttttaggtac       540
     cgcatgctgc ggaatgctgc tatcaaaagt tgggtctgga aatttatttt cttcatgagc       600
     ctatatctcg aaaacttaat aagtgattta aaaaataata tattttactt atctacccat       660
     acctcgctgg aatgcacctt atactgaaac acagtgtata aacatagtat gcatttcaca       720
     ccccttcttc ccccttagac tacgcctatg acaacaagtc gatcgcgaca cacttttaag       780
     ataaaaagta gatcttatat acagaaaagt tggccacccc tg                          822
//
ID   hAT-N1B_CQ  repbase;    DNA;    INV; 1169 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_CQ; hAT-N1B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1169
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 97-97 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >92% identity.
CC   8-bp TSD. ~87% identical to hAT-N1_CQ.
XX
SQ   Sequence 1169 BP; 410 A; 196 C; 167 G; 396 T; 0 other;
     caggggtgac caaagtatgg cccgcgggcc aaacgtggcc cgcgaggtga ttttttgtgg        60
     cccgcggacc cattttgaat gatcacgtaa aatggcccgt tgaccacttg taaagtgatt       120
     ttatgctttt ttttaaatta aggtttattc taaacatttt tatgcttatc ttttatattt       180
     tttgttaata aaaaagctaa tgacttatca gtattttgat ccccatttta ggacacacat       240
     attttgtcaa aaaatccttt taattaaaac aatttcacac ggttcaatgt gagtgaaact       300
     aataaatatc gtgaaaactt tcatcaaaca tttttgaaaa tatttataaa acgttcaaat       360
     ttgacttagg tagaaacctg taattgttct aaaaatataa gtattctaga ttaatttgaa       420
     agtcataatg acccttttat gaactgaccc tcaaactaac tttacactta gaaaccggga       480
     ttcgaactca tgacagttag ataacgaatc tgattgacta ccatctgatt caggtagaca       540
     caatgttgaa atcggaggat cgaggctatt gcaaatattt tacaaagctt ttgtcgaccg       600
     accctcccct ccccaattat taaaaattgg ctcaaaaaac aaggagcaaa aatatttata       660
     aaaaatcgaa aaatcaatgg aaacttaggt acgatcagct gaaatcaatt aaaaatgaat       720
     tcctcttcgt tcagaatcat ttgagcatgt tcgggtttat taaaaataaa ttttattttt       780
     gtaaattttc gatgaatcaa tgttttttcg caaaaaaaaa tcgtcgaatc tttttttttt       840
     gaaaataatg attgcagttt aactttacgg ttgcttaaaa cattttctat cattgaaatt       900
     ctagctctaa aagatttttc attagtcaca ctcgatttaa agataaaatt accccgttac       960
     ataaattgat cagtttacat gtcaccactt tgaaatataa atacaaaact attatttgta      1020
     attaccgaaa atgttcaaaa aataaataaa aaatcaactt atagatgtat tttccagtct      1080
     tttaaattaa aattatttag taaatctggc ccgcaagctc aattgagctt taaatttggc      1140
     ccggcctcca aaaactttga gcacccctg                                        1169
//
ID   hAT-N1B_DBp repbase;    DNA;    INV; 1616 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_DBp; hAT-N1B_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1616
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 616-616 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8bp TSD. It is a composite DNA
CC   transposon in which a Helitron-N1_DBp (701-1461, ~94% identical
CC   to consensus) is inserted into a hAT-N1_DBp (1-700, 1462-1616).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           6..407
FT                 /product="hAT-N1B_DBp_1p"
FT                 /note="hAT transposase, partial."
FT                 /translation="MSEIYQNIDISIYILLKKYYYRDIFWAKIVDNNIFEL
FT                 VFSDICCERKEMQVYLSMPFCSWETNPLEFWNSQISTMPMLAKVALSFLIT
FT                 PGSSVPSERLASAIKCIVCDSRSRMTDQHITERVFFKSLKKDLFCN"
XX
SQ   Sequence 1616 BP; 535 A; 250 C; 291 G; 539 T; 1 other;
     tagggatgtc ggaaatatat caaaatatcg atatatcgat atatattctc ttaaaaaaat        60
     attattatcg tgatattttt tgggcaaaaa tagtcgataa taatattttt gagttggtgt       120
     tctccgatat ttgttgcgaa agaaaggaaa tgcaggttta cttgagtatg ccattttgta       180
     gttgggagac aaatccgttg gaattctgga actcacaaat ttcaacgatg ccgatgctag       240
     cgaaggttgc tttaagtttt cttatcacgc ctggaagttc ggttccatct gaacggttgg       300
     cttctgccat taaatgtatt gtctgtgact cccgtagtcg aatgacagac cagcatataa       360
     ccgaaagagt tttttttaaa tcattgaaga aagatttatt ttgtaattaa gagtaattaa       420
     gagcattaaa taagagaatt aagtaattag aattattaag tacatattcc atgaattcca       480
     tgaaactttt ttttgtatta agttttttta taaataaatt tgaatacaat gtccttaata       540
     attttgttat tttttatttc aaagaactta aataaaagtt gcttgagagt gggtataaat       600
     atttgttgtt ttttcaattc actttttaaa taaaaaatat gtcttatttg cagttcatgg       660
     cggatgaaaa cacatattaa aaaccttttt ttwaatttaa caagaaagga aagctaactt       720
     cgggcggagc cgaagtttat atacccttgc agctaaaacc ggatatatat cgcaaacatc       780
     ggatatagtt ggccgatcat tatgaaattt ggtaggatgg atcaaaatat agtctgtacc       840
     aagttccagc tttctatctt caaaaacacg aaagttgggt catttccgat cgttcagtta       900
     tatggcagct ataggatata gtcggccgat cctaatgaaa tttggtaggt tggatcaact       960
     aaccaaaaaa agagtctgta ctaaattcca gctttctatc ttcaaaaaca cgaaagttgg      1020
     gtcatttccg atcgttgagt tatatggcag ctataggata tagtcggccg atccttatga      1080
     aatttggcat gtcgtattat tttgccaaaa atagctttca tgtcaaattt gaactctcta      1140
     actttaaaaa caccaaagtt ataccatttc cgatcaatca gttatatggc agctataggg      1200
     tatagtcggc cgatcccggc cgttccgact tatatactgc gtgcaaagaa aagaagggtg      1260
     tgtgcaaagt ttcaagacga tagctttaaa actgagagac tagtttgcgt agaaacagac      1320
     agacggacag acggacatgc tcatatcaac tcaggaggtg atcctgatca agaatatata      1380
     tactttatag ggtcggagat gtctccttca ctgcgttgca cacttttgga caaaattata      1440
     ataccctctg caagggtata aaaataacct tttttcaaat ttagctgact ataaaaaata      1500
     tcgaaaatac tcgatatatc gatttttttg ggtgatattt ctgaatatta tcgattgata      1560
     tttttttcac agcaaatatc atcaatacga tattttttca aaaaccaaca acccta          1616
//
ID   hAT-N1_AAe  repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   31-MAR-2011 (Rel. 16.04, Created)
DT   31-MAR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-491
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1313-1313 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96% identity.
CC   8-bp TSDs. 52-bp TIRs.
XX
SQ   Sequence 491 BP; 101 A; 88 C; 152 G; 149 T; 1 other;
     tagagatggt cgggtctcgg gttttcaaac ccgaaacccg acccgaaccc gaacccgacg        60
     ggttcgggtc gggttcgggt ttgaaaattt ttattttttc gggttcgggt tcgggtcggg       120
     tttgaaggct aaaaaattat cgggtacggg tcgggttcgg gcttgaaaaa wgtcgggttt       180
     agtcgggttt gggtcgggtt tggtgagaat tgttcacaaa gtaacaacct gaaagcttcc       240
     caatgcatca gaaacgatga atttatcatc ttttcgaacc cgggttctat tcgggttttt       300
     cttagaaaac tttttcgggt ttcgggtcgg gttcgggttt gaacagcgaa aaattttcgg       360
     gttcgggtcg ggtccgggtt tgcttttcaa tttttgtctc gggttcgggt cgggtccggg       420
     tttgaaggaa taaaataagt cgggtacggg tcgggttcgg gtttggaaaa tgtgaaaccc       480
     gaccatctct a                                                            491
//
ID   hAT-N1_AP   repbase;    DNA;    INV; 561 BP.
XX
AC   .
XX
DT   19-MAR-2009 (Rel. 14.03, Created)
DT   19-MAR-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_AP.
XX
NM   hAT-N1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-561
RA   Bao W. and Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(3), 660-660 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 561 BP; 176 A; 83 C; 92 G; 210 T; 0 other;
     cagcggttct taacctgtgg tcctcggccc cctgggggtc cgcgatactc atatcggggg        60
     tccgcggcag ccttaacaca taacatacgt caataagtga catgaatgca ttattacaat       120
     attgttggat tattattatt ttttttcttc atatcatata taatatgtgg attctatacc       180
     aaataattgt attattaata tttattaaat aatcagtttt tcttgttcat acgaaatgta       240
     cacgcataca gcactgtact ccacagtctt atatttaggt actgccacta agtgcagttg       300
     atcgatcgta ctccaattat agttttattt aacattttta taaaaaatta attgtaatat       360
     ttaataatta taaatgtgta tgttttttta agtctactta tgtaatttgt tttataaaat       420
     aattattata attttggtta tgataacatg agatgttttg taaaaaaaaa aggtattcga       480
     aaaaaatttg gtaagggggt ccgcgatttc tagatatctt tcatcggggg tccgtgatct       540
     acaaaaggtt aagaaccact g                                                 561
//
ID   hAT-N1_BTa  repbase;    DNA;    INV; 369 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-369
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 624-624 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 369 BP; 120 A; 56 C; 63 G; 129 T; 1 other;
     tagtgatggc gatatcaaat cgattatttc ggtaaatcga ttttttggaa aaaataatcg        60
     agaaaatcga atcgattttt tgttgccgat ttttaatcga aatcgatttt tcgagcagaa       120
     atcgaattat tgaaaaaatc gaaattttct acgttaatgt ggcacaaaaa ggcctaaatt       180
     ctgtgaaacc cgagtttcat ttcaaggttc agwtttgttt ttggcgttga aggtggattt       240
     ttaagtgttt taaaatcgat ttcgaagaaa atcgattttt tccatccgat tttaaaatcg       300
     aatcgatttt ctaccgaaaa tcaaatcgat ttcccgaaat cgatttattc gaaaacatcg       360
     ccatcccta                                                               369
//
ID   hAT-N1_CQ   repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1286
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 98-98 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92% identity.
CC   8-bp TSD.
XX
SQ   Sequence 1286 BP; 447 A; 202 C; 169 G; 467 T; 1 other;
     caggggtgac caaagtatgg cccgcgggcc aaacgtggcc cgcgaggtga tattttgtgg        60
     cccgcggacc cattttgaat gatcatgtaa aatggcccgt tgaccacttg taaagtgatt       120
     ttatactttt tcaaaattaa ggtttatttt aaacttttat atgctaatct tttttatttt       180
     ttgttaataa aaaaacttat katttatcaa tattttgatc cccactttag gatacaaata       240
     atttgttcaa aatattttat aattaaaaca atttcacacg tttcaatgtg agtgaaacta       300
     gtaaatatcg tcaaaacttt catcaaacat ttttagaaat attaaaaaac gttcaagttt       360
     gacttaggta gaattctgta atagttgcaa aaatataagt tttctttatt aatttgcaag       420
     tcataatgac ccttttatga actgaccctc aaactataca ttgcacttcc ttcgggattc       480
     gaactcatta cagttagata acgaatctga ttgactacca actgattcag gcagacaaaa       540
     tgtggaaatc ggaggatcaa gtttgttgca aatattttac aaagctttcg tcgatcaacc       600
     cacccctcca ccattataaa aaattggctc aaaaaccagg agcaaaaata tattttcaaa       660
     aaacttaaaa aaatgaaatt taagtgcaat cagctgaaat ttattaaata tgcattcctt       720
     tgcatttaga atcagttgag tttattaaaa ataatttgaa ttttagtgaa ttttcgatga       780
     aataaataaa tgttttttcg ctaatttttt ttttgtcgaa tctttttttg aaaataatga       840
     ttgcagttta actatacgga agcttaaaac attttctaac attttttttc attgaaatgt       900
     tgaaattctg gctctcaacg atttttcatt agccacactt aacttataga taaaattacg       960
     cctttagatg aattgttcaa catgtaatgt caccattttc gaaatataaa aacaaaactt      1020
     tttttttttt gaaaacacaa gtacattcag ctaaaaactt tttttttcaa atacctgaaa      1080
     caataaaatc aacaataccg atagaaaacc gttattttgt ggtttctatt attttgaatt      1140
     agattttttt taaataacag aaattaaatc ttttaaatta aaataacgta atttaatttt      1200
     tttaataacc ttttttgtaa atttggcccg caagctcatt tgagcttcaa atttggcccg      1260
     gcctccaaaa actttgagca cccctg                                           1286
//
ID   hAT-N1_DBp  repbase;    DNA;    INV; 856 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-856
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 617-617 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 8bp TSD.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           6..407
FT                 /product="hAT-N1_DBp_1p"
FT                 /note="hAT transposase, partial."
FT                 /translation="MSEIYQNIDISIYFLLKKYYYRDIFWAKIVDNNIFEL
FT                 VFSDICCERKEMQVYLSMPFCSWETNPLEFWNSQISTMPMLAKVALSFLIT
FT                 PGSSVPSERLASAIKCIVCDSRSRMTDQHITERVFFKSLKKDLFCN"
XX
SQ   Sequence 856 BP; 292 A; 106 C; 132 G; 326 T; 0 other;
     tagggatgtc ggaaatatat caaaatatcg atatatcgat atattttctc ttaaaaaaat        60
     attattatcg tgatattttt tgggcaaaaa tagtcgataa taatattttt gagttggtgt       120
     tctccgatat ttgttgcgaa agaaaggaaa tgcaggttta cttgagtatg ccattttgta       180
     gttgggagac aaatccgttg gaattctgga actcacaaat ttcaacgatg ccgatgctag       240
     cgaaggttgc tttaagtttt cttatcacgc ctggaagttc ggttccatct gaacggttgg       300
     cttctgccat taaatgtatt gtctgtgact cccgtagtcg aatgacagac cagcatataa       360
     ccgaaagagt tttttttaaa tcattgaaga aagatttatt ttgtaattaa gagtaattaa       420
     gagcattaaa taagagaatt aagtaattag aattattaag tacatattcc atgaattcca       480
     tgaaactttt tttttgtatt aagttttttt ataaataaat ttgaatacaa tgtccttaat       540
     aattttgtta ttttttattt caaagaactt aaataaaagt tgcttgagag tgggtataaa       600
     tatttgttgt tttttcaatt cactttttaa ataaaaaaat atgtcttatt tgcagttcat       660
     ggcggatgaa aacacatatt aaaacctttt tttaaattta aaaataacct tttttcaaat       720
     ttagctgact ataaaaaata tcgaaaatac tcgatatatc gatttttttg ggtgatattt       780
     ctgaatatta tcgattgata tttttttcac agcaaatatc atcaatacga tattttttca       840
     aaaaccaaca acccta                                                       856
//
ID   hAT-N1_DEl  repbase;    DNA;    INV; 513 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-513
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 427-427 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. Similar to hAT-1N_DP. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 513 BP; 186 A; 76 C; 90 G; 159 T; 2 other;
     tagagttggg ttgctcatga atgagtgaac aaaaaagagt tgttcactta agtgagtgaa        60
     ctgaacatgt tcacaattat tgatcttttt tgctcacttg ttcagttgct cagttgttca       120
     gttgctcagt attcagttaa gcagttgctt aaagatcttt attcgctcaa ttgttttatt       180
     tgctgactag ttmtttcctt atattactta aataaatatg tatatgatct caaataatac       240
     gccatttgac attgtactga ttttataatc tttgataaga gkgatgttaa caataggcaa       300
     gacagtataa aaccaaaaaa attgtcagca agtgaaactt gtgagcaaac ttgatcaact       360
     gaacaactaa ataactgagc aaataaaaaa ctgaacaaat gagcaactga acaactgaac       420
     aagtgagcaa ctgaaaataa ctgaacaaca agtgagtgaa caagtgagtg agtttgttca       480
     ctcaataaaa agtgagcaac tgaacttgtt cac                                    513
//
ID   hAT-N1_DF   repbase;    DNA;    INV; 1149 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   22-SEP-2015 (Rel. 20.09, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-1N_DF; hAT-N1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1149
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 764-764 (2012).
XX
RN   [2]
RP   1-1149
RA   Bao W.;
RT   "Reclassified and renaed as hAT-N1_DF.";
RL   Direct Submission to Repbase Update (22-SEP-2015).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1149 BP; 367 A; 203 C; 216 G; 363 T; 0 other;
     caggggcgta gctaccgccg tatacgccgt atcaattata cggggccccc gggccaaggg        60
     ggcccccaaa gtgtgtaaga gtgaatattt aaaatttgat ttttatttgt aaaatgggta       120
     aataatgtga taaataaata tttcttctca caatattttt tatacccttg cagagcaaaa       180
     gggtattata atttcggtca gaagtttgca acgcagtgaa ggagacacct cagaccccat       240
     aaagtatata tattcttgat cagcatcacg agtagaatcg gaatacgtct gtacgtctgt       300
     ccgtctgtcc gtctgtccgt ttccgcgtaa actagtctct cagttttaaa gctatcttgc       360
     tgaaactttc ccaaaaggtg tgtagttatt gcacgcagta tataagtcgg aacgggccgg       420
     atcggccgac tatatcggat agctcccata cgagagaatg aaataaaaaa ttctcacgcc       480
     gttgtttttg atcagatcga cttgatttct tcaagatggc gttttctaac tgttattgaa       540
     tttcggatta aatttgatca aaatcggata actctatcat atagctgcca taggagagat       600
     cgaaaaatat atatagaatt aatggaaata aattgataac atcgttgttt tttatcccac       660
     gagcatgatt ttttgaatat caagttttta aaaactctta tattgagaaa aaagtttcat       720
     aaaaatcgga caactatatc ttatagctgc cataggaaag atcgaaaaat ctatatagaa       780
     ataacggaaa taaaattgta acatcgttgt ttttcatcag acaagcatga tttttggaat       840
     atagagtttt ctaacgactc ttgaataccg aattaaattt catcaaaatc ggacgagtat       900
     atcatatagc cgtcatttga acaatagtcg aaaatataga aaatgaatag aaaaatcgtc       960
     ttagcttcga tgttgtttag ccgttatgta tttttttcga catatttgat gactgcaagg      1020
     gtataaaagc ttcggtttgc cgaagctagc ttcctttctt gttttctttt gtgaaaaatc      1080
     tttacctcca tataagggcc tccaaaaaat tttttatacg gggccccgac aaggcacgct      1140
     acgccactg                                                              1149
//
ID   hAT-N1_DK   repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-523
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1230-1230 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ~70-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 523 BP; 171 A; 86 C; 94 G; 172 T; 0 other;
     tagagctgga aaacaatcga tggcactatc gataccatcg atgtttctta aattttgtaa        60
     acatcgatgg ttcttgggcc gctatcgatt gtttttattg tattgaagta gcacataaag       120
     gagaaggagt gaatcaactt gagtattgga cggtaataat caatgtaata tgtaatgttt       180
     tcgtataacc aaaaatgttt tctctgtttt tttagacgca tacaaacgat acaacagcct       240
     tagcaatgct gtctaaaaag gtcttatgcg tgccagcatc ttcctgcgct tcagagcgag       300
     cgttcagcaa agctggacaa attatatctg acaggagatg cgcattaaaa tcaaacattg       360
     ttgatcagtt aatgttttta aataagaatt atgatctcaa ataaaaaaac tacttaattg       420
     atatttttat gttttatttg aaaacatcga tgtttcatcg atggtttctt caaaaacatc       480
     gaaaacatcg atggtcccaa acatcgattg ttttccagct cta                         523
//
ID   hAT-N1_DTa  repbase;    DNA;    INV; 1060 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   18-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1060
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6249-6249 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1060 BP; 340 A; 194 C; 174 G; 352 T; 0 other;
     tagacatctg catgactgga atcaaacagg ctttgaaatg attccattcg aatagaatag        60
     agttgagtaa atgctcagca cactatgact agaatggatt gcatcttggt ccgtatagag       120
     tatgacagaa aaggcctaga gttaaacgag tgataacgaa aaacagaatg tcatatttga       180
     ataggctgaa atcattcgag ttattcgaat ccattcgatt ttcttatatg acgtcataag       240
     ggcaaaatag aaaattaaat ttgttttgat atacatatat gtatgtctat aaataagtat       300
     ttttgtgatt tcttattttc gaaattacca agctcccctt agtttaaact caaaacacat       360
     gcaaaaatcc acgagaatta aaaaaaatat ggaaaaacaa ttagttttat gaacatatcc       420
     cagaaccaaa agatccgcct ctatcgccac agataaagaa aggaatggtc ttccttggac       480
     cgcgacttct tagtattgtc atcctggagt ttgttagata aattcttaag aagttgcggt       540
     ccaaggaaga ccattccatt ctgcctcttc actacactat tttgtacttc tcctccttgg       600
     tccgcgaatt cttaggattt gcggtagaag gaagaccatt cctttctgcc tcttcactac       660
     actattttat acttctcctc cttggtccgc gaattcttag gatttaaata tgaaaatggc       720
     atggttggat tcagtggcga gctaaaacta aaggtagatt tgtaatttaa aaaaagacaa       780
     aaaaccaaat atttatgtaa gtatttcaaa acaaatttaa ttttccattt tgcccttatg       840
     acgtcatgta agaactcgaa tggattcgaa taaattcgtc tgagttgttc gtgtactcat       900
     ttactcgatt cgttttccat caccatttct ggttcgactg agttttacgt cagtacactt       960
     atttattcaa gccagtttcc ctacacattc caactcattc aactcatttt gaacattgtc      1020
     aattcgaata tgtatttttt gttattcatg cagatgtcta                            1060
//
ID   hAT-N1_LMi  repbase;    DNA;    INV; 834 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-834
RA   Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3059-3059 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 834 BP; 247 A; 169 C; 174 G; 244 T; 0 other;
     cagtggcggc gctagacgaa aactgggcgt cggcgaactc gtctttgcga ggcccctttc        60
     attttttcag taaggaagaa aatgttaaat aaaatgagct gaattataca tcaataatca       120
     ttatactaaa attttattag tataatatac gagtattatt gcaatgacaa aaattacaat       180
     aaacaaacac aaattagaga aacttttcgg cttttcgtct cactgaattt ttttaagatc       240
     acatcttaat taatactagc cgctatttcg gcttcagttg atagtactga caacgcagat       300
     agtctttctt ggctcattgt gcttctcaag ttagtcttaa tcaattttaa ctttgtgaag       360
     cttctctcgg ccgaagctgt actgactgga actgtgagca tgattctgat tgttatataa       420
     acatttggat atacttcttc caaattgttt tctaaaatgt actgaagaag ttgttttgca       480
     agtatttaac taaaaattgc atcactgctg cactcatacg gaaataaata cggacaacta       540
     aatagctgcc ggccgggaat ggccgagcgc actaaggcgt cataccacgg tgagcgagat       600
     cgctctcgtc gggggtcgaa tcccaccctt gggtacggat gttgtgttcg tcctttggtt       660
     aagctagtgt aagttagatg taggtcgtcg ctacataacc tagcagttga aaagcgccgt       720
     taaacatcaa atataaaaaa aaaaagctaa aattttaaca atgttttgcg aggcccccac       780
     aggcgcgagg ccgtcggcgg ttgccgacgt cgccgacgcc tagcgccgcc actg             834
//
ID   hAT-N1_PPo  repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2755-2755 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. ~30bp TIRs. 8bp TSDs.
XX
SQ   Sequence 184 BP; 51 A; 32 C; 34 G; 67 T; 0 other;
     cagtgattct caaccactgt gccgcggcac ttttgtgtgc cgccaaattt tgcatatttt        60
     tgtcataaac tatttatgca gtgtgttgta gtaagtaaat aatttttatc tttttctttg       120
     tgtgccgcca aattttgaaa tcgttaaata tgtgccgcaa caaaaaaaag gttgagaatc       180
     actg                                                                    184
//
ID   hAT-N1_RPr  repbase;    DNA;    INV; 651 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-651
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3342-3342 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 8-bp long.
XX
SQ   Sequence 651 BP; 211 A; 116 C; 123 G; 201 T; 0 other;
     cagtggttcc caaagtggtc cctacggacc cccaggggtc cccggtatca ttcagggggt        60
     ccgtggaaaa ttaaaattga tttgggggtc cctgaacaac gtcagggggt ccgcgcaagg       120
     ttcaatataa aataataaaa ctgtgatcca tttttattat tatggaaatt agaaactaac       180
     aaggtgacca attaaattta atcaaaacta aaagcgtaat atctgcgttt gttgcaaaac       240
     gttttctgta aaaacaaaac ttgggaagag gagaacgttc tcagtttcca aatctttcga       300
     aattgcaaaa tagagatgaa gatttgcttg ctcactgtcg aacacttaac ggctcttcat       360
     gcagacctga accaaagatt actcgtgggg atttgcggtt gctactcaca aacattgagc       420
     cggatataaa tacactcata acatctcatc acgttcatcc aaattattaa tttttttaaa       480
     ttttatttta aacaaaagtt ataatttcaa taaatacttc ttcaacaaaa tgctttttta       540
     aatttgtaat ttttatacta tgcatttatg tagctttttc acttgggggt ccgtgggcaa       600
     gttttgacta taaaaagggg tccatgggtc aaaaaagttt gggaaccact g                651
//
ID   hAT-N20_DTa repbase;    DNA;    INV; 661 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   06-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N20_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-661
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6194-6194 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 661 BP; 210 A; 127 C; 109 G; 215 T; 0 other;
     cagggctgtg aaccactccg gagctgaacc actccgaacc ggagtggttc acttttttta        60
     gaaaacgaac cgaaccgtaa accggagcgc cgaatttttt tataattgaa ccggaaccga       120
     accggaactt ttttttttta tattcggttc ggttcacgaa aaatttattt tgtgtgttcg       180
     tgttttttta ttcaacagtg tggggggttt tctgatcata ttaacataga gtttatttac       240
     taagggaaat aaaaatgcgc caatttttgt ggctatgcaa tgactgcatc taactcaaac       300
     aatctaataa tatataacta tcatcttcca aaacttttcg cagtatgccc acattaaaat       360
     tacatgatta aagcaaagag tatactcttt gccttaactg gtaaacactt tataaatcat       420
     aaatctagta actttactta taagtcttaa tgttatggta catatttcaa tgaaaataca       480
     tggaaataaa tgttgacttt attatttcat taaaaaaaaa ttattttttt gaaccctggt       540
     tcgaacctga accctgctcc ggctcatcat tgaaccggtt cgcaaaccgg aacattatct       600
     gtcgattagg tttgaacccc gaaccgaacc catgcaaaaa taatatgggt tcacagccct       660
     g                                                                       661
//
ID   hAT-N20_LMi repbase;    DNA;    INV; 1256 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1256
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2939-2939 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1256 BP; 356 A; 256 C; 286 G; 358 T; 0 other;
     caggctgttc cagctcgcgc gctcgcccgt gagtaggggg caccgcttct cggccgtgag        60
     ctgttgcgtg ggacacggct gcggcgagcg tatgtgcaag tgaagcagcc ggtgggctgt       120
     gacgtcacga gaaactgcca gtctacattc caattcccgc gacgggcaca attgtttctg       180
     aaatagctat aactgaaact gccatttttc tccatggaaa tgcgggacac gtgacgccag       240
     gtcaatcctc agcgataata atgttttttg ttattataat taatgtaaaa gctctgtgaa       300
     cctgaatatc aatgatgtgg tttcatgact ggaatttaat aaagcatgtt catggtggca       360
     ttattttaca tttttaaatg cctgtttcat ggaaccaaca taaggagtat ttcttatcag       420
     tgtgtaacga attttcccgt tatttttaat gaagaatctg attttagaag ttgtttctag       480
     aatatcaaaa ggagccagat tatgactgaa tgatttatca gctgaaccgc atcctagttt       540
     ccaccatgtt aatcctaaat atggcaatac gaattttaca gtgcatttca taactaggat       600
     ttcggtcttc gagaaaagta ggctatgttt tttatgttca aagaaatggt acatttgcgt       660
     ttaggcataa tagcttactt caggcaaatg agtaacacac caccttaatt gataataact       720
     agagtaacca aaagtcgcct gtcttaaaag tttcagaacg cgctaaacag gagcaacaat       780
     aagtgacata acggtcgatc cagcatttat cacaagaaat ggcacaaata ctaaggtttt       840
     cagtttagaa agacagtgca agaaaatacg gacccaattt gcatcctcat aaaaattgta       900
     gggatgtgag acacacaagc aaaaaacggg gctgtccttt tttctgtaat gacgctgtag       960
     attgaatatt tttgtgcaat aagagttgtg atacattaga cattgtggac gtcagtctct      1020
     gttagtgaag agatacagtt cttataaaga agtaggcact aggctttggc ggctacacat      1080
     ttttgctgtt gtcacaacta cccattgacg agaactcaac gaacgcgtct gtttccttat      1140
     gcccgccgag tactggcgtg cgtgacgtca gcttgcccca ccaccgcagc tccgagctgg      1200
     ggtagtgagc gctcgtgtgc gctcctgctc gcggagcagc ctgttggaac agcctg          1256
//
ID   hAT-N20_RPr repbase;    DNA;    INV; 740 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N20_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-740
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3362-3362 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 740 BP; 218 A; 112 C; 163 G; 247 T; 0 other;
     cagtctttct caaagtgggc gataacgccc ccttgtgggc gctggaggcc tacagggggg        60
     cggtaaaggg cccagagaaa attggggggt gttgaagcgg tttagggggg gcgatggctg       120
     atttgtgttt tttctaatat tttaaactaa aatcaaaacc tacctactac actacatcga       180
     ttatttcgtt gtttcgttaa ttttgggcta caaaagccaa tcccgcaatt gtaccctgga       240
     ttgtggtcga ttgttcaacg attttttgat agcattccca tcgtcgtatt tgtgtgaacg       300
     tggatttagt gctgtggcaa cgctgctaac tagaaagaga aatcgtttgc atgttaccga       360
     acgcggtgac ttacggctgt ttttttgagt aaattcgagc ctgatattaa ccaaacttgt       420
     taaaaatcat cagattcatc cttcacatta gattagtttt aaaatttaaa ttgaaatgtt       480
     tgttttaatt tgaataaaag tttttctaaa tattatttat aaagttgcgt tttattgctc       540
     tcattagaac agtctcattt aaaatgtaag tttgaactca gaaacaggat aagactcata       600
     tggcacgcta taattaaatt aaagtaatga ttgcgattgt gatttttaag atgtggtaaa       660
     gttaaaaatt ttagggggcg ctagaaaata attgattctc aaagtgggcg gtagacgaaa       720
     tataagtttg agaacctctg                                                   740
//
ID   hAT-N21_DTa repbase;    DNA;    INV; 653 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N21_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-653
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6195-6195 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 653 BP; 236 A; 129 C; 95 G; 193 T; 0 other;
     cagggaataa aaccagaacc agaaccggaa ccgataaccg aaataaaccg attcctaata        60
     aagaaccgga accggtaccg agaccaaaat aaaaatttaa tttcgaaccg attaccgtat       120
     tgctggtacc ggtacggttt tggtactcat ttactaaatt cgttaaaaat cctgaataaa       180
     aaaataccca tagtatgtat cagctcccac tttccgctaa tcgacttctt cccgtccctt       240
     tttagcagat gtactgctca tgtaagaaaa tatcgctgta gcagaaacat tctttgtcta       300
     aacaagttga aaatctggca tttttggcgc cattcttttt aagaagctaa taaccctatt       360
     tcttcttaga aataaaaaag ttaaaaatta attaaaatct taatttgtat attttatatc       420
     aaaaaatcaa attaatttta atgatcttac attcaagttt ttttccaaat aaaactcaca       480
     taaatccttt taaagtatta attgaaatgt tttttaactg taccggtacg taccggtacc       540
     agaaccggaa ccaaaacatc aataccgaaa tataaccgtt taccgaataa gcagattcgg       600
     tatgggacca gtaccggaac cggaaccgaa ataagattcg gtttgattcc ctg              653
//
ID   hAT-N21_LMi repbase;    DNA;    INV; 1175 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1175
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2940-2940 (2014).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1175 BP; 309 A; 251 C; 250 G; 362 T; 3 other;
     caggggtggg caaatgcgct attgcgagcg cggacgcccg caagcgctca cactgcttgc        60
     ccgcgggcac tgccagcata gagttccccc tccactccct gctaacattg ctcggttgct       120
     ggcgtgagcg cgccaagacg ggcctgttca cttcscgtca ttagaatagt gttatcggtg       180
     tcgaagcctg cttggcgttc gtggtaggac aaaattagtg agaggaaaaa atattgaaat       240
     attttacaag aacttccctc gagaagagtt cccgcagctg tttagactag ctgctcgagt       300
     ctgcagtatg ttcggaacta aatatttgtg tgaaagtgta ttttttctaa atgaaattaa       360
     cgaaattgaa ggtcaggagt aatcttactg acgttcaact gactggagca atgcggttga       420
     tgaccagtga tctcactcca aacattgaga tgctaattta aaaaacttaa acagaattag       480
     agagtgatga aaacacacgt ttcttttttt ttctaagtgc gtctgaactt aacacttctc       540
     agtaataatg tgtattaagt taataawtgt ttaataaaaa tgcatgtatt ctttgtttct       600
     tattttgtgt ctgtgttgtg tttgtgacca gaaaattaag tcgacggaaa tgatagttta       660
     ttctccttta ttgattasta ttagtccctc tccctccctg ctcaccaatg acctgaacga       720
     cagaattttg aacgtaactg ctgtcaacct atgcaacgta ttattttgcg acgctgctgt       780
     actcattaca gcgtcacgca atgaaaatat ttttttcttt atttgttcct ttgacgttgt       840
     gttgtgcctc tatctgatag aattgttata agctgaaatt acttattcat tccatggcac       900
     ctttgtacaa cacaagattg gtctttaagg caatacttcc tcaaatacta tgcaaatgtt       960
     atatttcatc gtaagtattc attgcattgt catactgtag taattatgac agtgcaaaga      1020
     atacttctaa cgtgactaca aactcgcgcg tcagctgtcg atcgtgtatt atcggcagtc      1080
     ttcggcgctg ttcgcgagta agagatcgcg agctgcgctc acggtgcccg cacggcggca      1140
     aaagtgcccg cgggcagctc acgcgcccac ccctg                                 1175
//
ID   hAT-N21_RPr repbase;    DNA;    INV; 1187 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N21_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1187
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3363-3363 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 1187 BP; 363 A; 240 C; 274 G; 310 T; 0 other;
     caggggtctc aaactcgcgg ccctcgggac aatagtttgc ggccccccac ctcaatatca        60
     aagtttaatg ttagtgcggc ccgagtttga tacgaattgc acttttcagt gttgtgtgcg       120
     gagctgaatg aacctaccaa tcacggtggg gtatattgct ctcggaagcg ggacatcagc       180
     cgggcttatt gcgaacttgc gccattaccc cgggcccaga agcggagggg gagaaaaaaa       240
     aagccgaaaa gacgcatcgg ctaaacactg aaacagtgac accaagtgga attatatatt       300
     acacagcccc aaacatgtct ttttcaaagc ccctgcagtg aagagaaagg ttggtgatga       360
     gcacagacaa tttcaggaaa agtgggaagt gcaatatttc tttgttgagc acaggggcat       420
     cccgacgtgt cttatttgcg cagagaaagt tgcggtacac aaagaataca atttgaaacg       480
     tcattacaca actagacatg ctgaggagta tgcaaaatac cagggagatg agagagcaaa       540
     ccgggttgct aatcttaaaa catatctact gaggcaacaa gatttcttta agaaagcaac       600
     caaagagaat gatgcagcag tcgaagctct agctacgtgg ttagtgagat gattgctaaa       660
     gcaggaaagc cattcaatga aggtgaattt gtaaaaaaaa gtgcatatta caggctgcaa       720
     gtattgtctg tccagaaaag aaaggtcagt ttagcaacat cagcctttct gccgacaccc       780
     tagcagagcg catttctcac ctgtcaagtg acatttatga tcaactgtgt gagaaagtaa       840
     aatgtttcag tgtatactca gtcgctcttg atgagaccac agacatcacc gacactgtgc       900
     ccatctcgca atctatgttc gtggtgttga tgacaatttt gaagtcatag aggagttgct       960
     cacagtgatt gcaatgcatg gcatttattt attgctgatt tatttatttt tttcttatga      1020
     atttgttatt tttatttttt aacacaaaat aagatgaaaa aataaagaca tttgataaca      1080
     ttggaatgtt tttgtaagag cttttcttgt ggaaaacctg atgcggccca gcctcaccca      1140
     gactctacct ccagcggccc ccgggtaaat tgagtttgag acccctg                    1187
//
ID   hAT-N22_LMi repbase;    DNA;    INV; 1166 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1166
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2941-2941 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1166 BP; 390 A; 178 C; 237 G; 361 T; 0 other;
     cagtgcagga tttacgtata agctaaacaa gctatagctt agggccccca ctttcttggg        60
     ggccccaaaa aaattgtccg agcgagcaat tgtgatatat acaattgtcg tatatttaaa       120
     ctaatgtgaa aacttgagag gatattgtta attttgtctt cgcattggta gtgaatagta       180
     ggtgaatatg gactggggaa aaggactgaa agaggaagtc gcctggtaga attttgcaga       240
     aaagcagata tagaagaagg catatcaatg atgatgaaga ggatgcttta gagaagcttg       300
     agccaagaga cgagttcaga atcaaaacat ttatacctgt gatggagcat tagagtcagt       360
     ctggcacaga aggcctcagt atacaatgat gctgcaaaaa agttttcatt cttaacagaa       420
     ttagaagcta cagatgaaga gattcgtgaa ggagttactg ctttatgcca aacatatcct       480
     gcagatgtgg acatgaatct tgtaggagaa gtcaagcatt ttcaccaata tgttagacat       540
     agtcaagcct atggttcagc ggaacatgat agtctgacac atcaggatct gtatagggtt       600
     atatttgacg atcgtgtcca aacagcattc cctaatgtag aagcagtttt gagattgttt       660
     cttagtatga tggttacaaa ttgctctgga gaaagatctt ttctcaactg aagaggataa       720
     aaaatgaatt tagaacaaca atgactcaag acaaattatg ttccctcagt ctcatgtgca       780
     tagaaagtga caaattacgc agtttatcat ttgatgatgt catctgtgac tttgctctgg       840
     caaaggcaag aaagaaaata ttttagcgtt aatataattt cggattcctt aaaacatgtt       900
     tcaagagatt agattataag cctttgtaaa ttgtgccttt taaaagaatt tttgtttctt       960
     tttaccagag tttttttttt aagtttgtga tgaataaaaa tgattttaag ttaaacattc      1020
     attatttccc tatctataat tgtatatcaa ttaaatcctt taggtataag aaaatcatat      1080
     ttggcactaa catataatat ctggacatct aaagggcccc atatctcaaa tagcttaggg      1140
     ccttttcaag tctaaatccg gccctg                                           1166
//
ID   hAT-N22_RPr repbase;    DNA;    INV; 859 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N22_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-859
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3364-3364 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 859 BP; 360 A; 112 C; 129 G; 258 T; 0 other;
     cagcgtttcc caacctgtgg tacgcgtacc actggtggta cgcgagttgc tggttggtgg        60
     tacgcgaaaa ataatcaata atggcggaca taaaaattta aaaaaaaaat caaagcataa       120
     aaatgttttt tcctataata cataaaaatt attttaatta ataatattat acagtaaagt       180
     tgttaatatg tacagtaata aggttagtct gtctcaagat atacgagaaa atataatagc       240
     acatttaaca ggattaaaat tgtctttcat ggagtatttt ccaaaacccg aaaacacaaa       300
     tgataattgg atttcaaacc ccttctataa agaaaattta ggaaaagcta catcattatc       360
     gataaaagat aaagaaaatt taatagaatt atcatgtgac agaacttaaa tgataactat       420
     gtaaaaatct gcttaaagag actgattgta atgagtaagc tctatccaag caacattaaa       480
     tttaattggt acttacaggt agttgaatgc ttaaaagaaa ttaatttaga agatttgggc       540
     acaaatataa taatcctaaa gaagaacttt gtaaattaat taataatttt gaagagaaaa       600
     atatgtacgc aatttttaat tatttaaaaa aagttttaaa actaagatct tacactttac       660
     aaagtttata aagtgaacat gaacttgaac tcctttgtaa cagatacatt gtatctctat       720
     acaaataaag ataataataa taaaataaca cactcggaat aacaaatttc acgaaataca       780
     atcattttta cgaagtggta caatttagca tgatgtacta ccaagtggta cgcgagccaa       840
     aaaaggttgg gaaacgctg                                                    859
//
ID   hAT-N23B_RPr repbase;    DNA;    INV; 699 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N23_RPr; hAT-N23B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-699
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3365-3365 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 699 BP; 226 A; 119 C; 141 G; 213 T; 0 other;
     cagtgattcc caaagtgtgc gccgcggctc cccggagcgc cgcggtgccg tcataagggc        60
     gccgcgaaat attcaattaa acaattcggc aatttggtag catggaactt tctgattttt       120
     ggatatcagt aaaaaaggaa tatccactgg ttagtggtaa agctctacga atattaattc       180
     catttgcaac atcctattgg tgcgaagctg ggttttcggc ggtcgcggta ataaaaagta       240
     aatatcgctc gaaaattaac gttgaacaag aaatgagggt agccatatcc aattttattc       300
     cgagatttga gaagttgtgt agtgaacatc aagcccatcc atcccattaa taattttaat       360
     aatgttaatc atcaatggac gttcaataaa ttgtttgtga atttaaaatt cgtgtttaat       420
     ttattttcca actaacctaa ccacatggtg gttgtgcccg tactcgatat ggatattacc       480
     gaaacagttg aaattagata ttttatatta tcccaaggaa aatagtaagt atctgttttt       540
     aatttttcgc tgttaaatgg gtaatcgctt ttgaaaagga aagttttcca atttttcaag       600
     aaagtcaaaa atttagaaaa aatcttatgt attaagggcg ccgcggaaaa aatccgatta       660
     tttagggaac cgcaaaccga aaaagattgg gaacctctg                              699
//
ID   hAT-N23_DTa repbase;    DNA;    INV; 569 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N23_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-569
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6196-6196 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 569 BP; 153 A; 122 C; 129 G; 165 T; 0 other;
     catagctcgc aaataactgt tgaccgattc gtgcggtccc caaataactg tttttctctg        60
     agactttgag caaacaatca gagagcaacc gattgaattg ttcgtacaga aattttgctc       120
     gcactcagcc gacgagcagt tttttcggct ttcttttgct cggctcgctt acagaccgat       180
     tgctcctgaa cgacgtttca aaaagtcttt tgcgcatgtg ttaacgttaa cgtgcttggg       240
     cgatattgct ctccctttca ctcgcacgta ctttcaaagg gaatacattg tatagttgta       300
     ttagtgaaaa gactttttgc gatgactttt tcagtcaatc ggtcttttaa taagtctccc       360
     tgtgcgagcg acattcgtat ctctcattga acgaggttcg taacagagcg tctcacgaac       420
     agctcaacgt aaaaggctca accgaaaacc aaaacgaaag gaaacgaagt gtgctgcgca       480
     gagagagaac gaggggcatg ctatttttcg gttgttctcg ggagtagagc gtaaggaaaa       540
     aaacggttaa cagttatttg catgctttg                                         569
//
ID   hAT-N23_LMi repbase;    DNA;    INV; 2307 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2307
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3209-3209 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2307 BP; 697 A; 511 C; 420 G; 679 T; 0 other;
     agtggcggat acagaatttt ttctgggggg gggggggggg gggcacaagg ctgaggaggg        60
     tgaatgtcct taaaggcgtt gtgagactaa ttttaaaata cacacacaca cattacagtc       120
     attatcacat ataactgata taggaaacac ccaaaatatg ctccaaagcc acagtcgctt       180
     cttagaaaaa actttttaat atacttccat ctattagtac tattaatgca ctattagttt       240
     ctgtgcttta tggcgtcatt ttcaagtgcc catgattaca aaaatattac aatgattaaa       300
     ccacattaaa tagtgaaaag tttcaaaatt taccacaaaa taaaaagaaa agaattcaga       360
     gtctgaatgc cctgtgttca gctgtgggca catttgtttc atcctttatc atcataaagg       420
     atgaaacact tgcccacagc tgaacacagg gcattcaggc tctgaattta attcgatttg       480
     taactgtttc tcagcttggc cagatgggta tatgcgaatc cctatacaga ggaagccatg       540
     cgaaattggc attggtttct ccacatattt acaactttcg aataattgga ctataagatt       600
     gaataagact gaccacttga aaactcaaac aattgtacaa tacggtcgaa aaataagttt       660
     tgtacaatga tgcccacagg attatgatat taaatgtgcc aaatgaatta atggtgactg       720
     tacaaaaacc tagggcatat ggttcacaaa taaaaaaaat gttcaaatgt ttgtaatcct       780
     aaggaacgaa actgctaagg tctcggtccc tagtcttaca aactacttaa actaactcat       840
     tctaaggaca acacgcacac ccattcccga gggaggactc gaacccctgg cgggagcggc       900
     agcgtactcc gcgacgttgc gccccagatc acacggccat tcccgcgcgg cgcacatggt       960
     ttgattgtca ttttgataaa tgtagagttc catactcccg atactctttt ttttattttg      1020
     tggtaaattt ttaaactttt cactgtttaa tgtggttgaa tcattgtaat attttttgta      1080
     atcataggct cttgagaatg acgccatagt gcgccgaaac tagtagtgca ttggtagtta      1140
     gatggaagta tattaattcg acaagtgaag acgattttac ctggtgatgc caggagcaga      1200
     aaacatctgc actagttgca ggacattcat ttatttcgga gcgctgtcaa cgttacgctg      1260
     cccctagaca cgaaatatta ctgcacacat tgttacgggt aacgtttcca acactgcgac      1320
     gctgccttcc gctcactgct cctcgcctcc cggcagccat ggtacacgcc tcctgccgct      1380
     gccaacagcc agcgcacgaa tcgtcaactt accgtggaca aacagtactg tatccggcgt      1440
     agctgtttca ttatcaaaca atgcactgaa caacaatcaa acagccagta aatatgtcgc      1500
     gctaagtttg atattccctc aaaacctaaa atcagatttc ctgtgtcgcg ttgtactgaa      1560
     tcaatttctt cttcgtgctt tgtaaagtta ctacgcaaaa cgtgatgagt tttcaagaaa      1620
     gctttcccga tcaacaaaat tacacttgat tgtgtttcta gaagaatttc tactagcatg      1680
     aaaatccttt gtatctgatg tgcggaaaaa tgccattgaa atttctaatt tgctccaata      1740
     actggaaaat cgaaacgtgt agcttcaaat aaaactgttt ataatgcgtg gcagtactat      1800
     ttcttagtgt ctaggaaaag aatccagagg ataaactgat taccgaaaac acctgaatgc      1860
     gccagcctga acgcagccct agaaattcac gatttttttc acatagttaa atcctttaac      1920
     tttatttacg tatgaataaa acgtacacaa tatctcattt atctcccaag caatcacaaa      1980
     acaataaacg acttttattt agttttatcg taaattactg acaaaaaagg agcaagaagc      2040
     aattaaaagg aagcataaca caaaaagtca atttacgtta tgttaattac agggattttg      2100
     cctttttaaa ctcacagtta catgctgtct gtaagtaaaa gttaattatt cttatgctga      2160
     gatttctccc tcctccctcc ctccctcccc cctctctctc tctctctctc tctctctctc      2220
     tctctctctc tctctctctc tttttttgtc aggctgtctg gggggggggc acgtgcccct      2280
     gtgccccccc cccctaaatc cgccctt                                          2307
//
ID   hAT-N23_RPr repbase;    DNA;    INV; 923 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N23_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-923
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3366-3366 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 923 BP; 284 A; 173 C; 175 G; 291 T; 0 other;
     cagtgattcc caaagtgtgc gccgcggctc cccggagcgc cgcggtgccg tcataagggc        60
     gccgcgaaat attcaattaa acaattcggc aattttcttg gaatttccaa ttctcgaatt       120
     tttgcgccaa caatcgtgta tgctgacaaa attccaagaa tttagcaact ttcgagtctt       180
     tcattgtttt ctttccaatc cgcatctttt gaaacggcta gtgcgcaagc acggcttccc       240
     cacccaagct ttagtggcca cttcttcaga agaatctctt attgacttgt cttgcgataa       300
     tactttaaag ttaaaatttg gtagcatgga actttctgat ttttggatat cagtaaaaaa       360
     ggaatatcca ctgcttagtg gtaaagctct acgaatatta attccatttg caacatccta       420
     ttggtgcgaa gctgggtttt cggcggtcgc ggtaataaaa agtaaatatc gctcgaaaat       480
     taacgttgaa caagaaatga gggtagccat atccaatttt attccgagat ttgagaagct       540
     gtgtagtgaa catcaagccc atccatccca ttaataattt taataatgtt aatcatcaat       600
     ggacgttcaa taaattgttt gtgaatttaa aattcgtgtt taatttattt tccaactaac       660
     ctaaccacat ggtggttgtc ccgtctcgat atggatatta ccgaaacagt tgaaattaga       720
     tattttatat tatcccaagg aaaatagtaa gtatctgttt ttaatttttc gctgttaaat       780
     gggtaatcgc ttttgaaaag gaaagttttc caatttttca agaaagtcaa aaatttagaa       840
     aaaaatctta tgtattaagg gcgccgcggg aaaaaatccg attatttagg gaaccgcaaa       900
     ccgaaaaaga ttgggaacct ctg                                               923
//
ID   hAT-N24_DTa repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   09-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N24_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-479
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6197-6197 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs, showing RTGtaCAY specfic.
XX
SQ   Sequence 479 BP; 146 A; 82 C; 85 G; 166 T; 0 other;
     tagggcggtc cacatttgta tggaaaattt taaggtccta ctctcacccg cttatacggt        60
     gcgcattgtg gtattcaagg tataccaaaa gacaattttt aaaaaaatcg tgttttaggg       120
     tctgcgaatt ggtttcaaag tttatcaccc atacgcactg ttgccttcga tcaaaaagtt       180
     tttctgatca aggtggcata gatatcaaca attcagttga tgttttgctc tccttttttt       240
     taccaattat tccaacgaaa ttcataattt gacaagacaa gaaatgggag agcgattttt       300
     ttcgaccaaa ttcgaactgt tatacatgtc gtatgagtaa ttttaaagca aactttgaag       360
     acgtttcgca aggtctaaat ctcgaaaaaa aattgttttg ttttcacata cattttttgc       420
     atactttaat ataccatgtt aaggggtgag aaaagaattt cattttttgg accgcccta        479
//
ID   hAT-N24_LMi repbase;    DNA;    INV; 1754 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1754
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3210-3210 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1754 BP; 512 A; 344 C; 403 G; 495 T; 0 other;
     tagaggtctg cgcggatgcg gatatccgcg atatgcggat atccgcagta tttcttactt        60
     tgcggataaa attgtgagcg acgcggatat ccgcgtgtta tatgcggata aagagcgagg       120
     tatctgccca gtacgtctgt cgaaatgtta gctgaaaact tcaagcctgt ggacattctt       180
     ggaatccttg cagggcccag gtagagcgga agtctgttgt cctcatcccc tggccacagc       240
     ggacgtagct gtacccgagg gacctgcgcc taatccgttt acgcgaccgt gtcttatctg       300
     cggtctgtca agtgctttct gggtggcaaa ccggcccact gcccaccaga ggtgccatgc       360
     caaatttccg ctgccttcag ttagcgcttt gtagtgaccg agtgacaacg tatatcgtag       420
     tgaatacagt gacagttctt tcttaaaatg aacacgacat caatggatac tatatcgtgt       480
     aaagtgaaaa gaggtgattt gacattagtg aaggaaaaca aattgaaatc gtcaatttgg       540
     aaaaaaattg gatacgtatt tgatggcaag gaaaagatca acgatatagt ggcctgtttt       600
     gcgtgtaaaa aagtatattc ttacactgga cacaaaagtg gaacttcaaa tttgctgaaa       660
     cattcgtgtg agacaggaca aagtagcata attacttatt taaataccaa gacagatgca       720
     aaagttcctg aagttccgcc aaatttgaag acaaccgcga ccgaaaaact tatcaatctt       780
     gtcagcaaag acattttacc gttcgaagtt gcgtgtggat ctgggtttct cgagacggca       840
     cagtttctta ttgatgtggg ggcatatctc ctgaactatg tgtcttacag tcatttaatt       900
     atgtcaataa ccgtcgcgaa agtgcaagca atatgttggc aaagtttcat cgcaaccgaa       960
     tgaacggtac agccgcgcat aaaatacgaa caaacattca tgtttatgta ttagataaat      1020
     ggtgacggaa gtaataaaga ttgacaatag cattttatag caactttcat aatcagatac      1080
     ggtgtacagt gaaagtaacg tatttaggaa ggtacacaat gttagattgt ataggctggc      1140
     cgtagctgca gccgacattg tctctttttg ctgacagtta ccaattagaa gtagacggca      1200
     gttttaacac ttgaaatgac atgctttgct ttgtgtcaca taacctcttg tgcgttaata      1260
     tggggaaaat aaagtgtccc ttttgtaaaa ctccgaaaga accgtttctt ttttttaatg      1320
     taaacacagt aaaatctcct ctatgccgat cagttttaac cactgaaatt taagaagatg      1380
     cctgtattaa acagctgacg tagtgctccg accacacggg ctccgaagcg ctactgtgtg      1440
     tgtccggagc gccaatgttt tcctgtttgg aatagcctgt tttggagtag gtatagaaca      1500
     gttaccgtga ttcgagaagt caaaagtagt taagttgtcg cagaaatgac actctaacaa      1560
     taattatatc attacatacc atggttttaa atactgctat ctattactat tacccattca      1620
     aaactttaat atctgcggat gcggataacg aacttgcgga tgcggataaa gtgccgcgga      1680
     tgcggttgcg gatatgggcc ttgcggatgt ggtgcggatg cggataacac ttttcttatc      1740
     cgcgcagacc tcta                                                        1754
//
ID   hAT-N24_RPr repbase;    DNA;    INV; 568 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N24_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-568
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3367-3367 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Satellite sequences are masked out.
XX
SQ   Sequence 568 BP; 155 A; 117 C; 115 G; 149 T; 32 other;
     caggggtgtc aaactggcgg cccgcgaggt aattttttat ggcccacgat gttctaaaat        60
     aaagtgaaaa tataaaaaat tgttacgaag aaaatagcgc ttaggggaga tcgaggcaat       120
     accgtacaca caattccctc gttaaccctt taactactga agacaagtat acacgtggcc       180
     cagtgccttt cctgggggcc tgtataaacg cggtgactac ttccggcgac gtttagaaac       240
     tctccgtgtc acgtaatgta aactgatccc aatagcggaa accttaaaaa gagcattctg       300
     ggttgagatg ttgtggatca tacctatcaa atcaaatttg taaatttaat gaggctcgcg       360
     tgaatcttgc ctgttgcacc taattgctcg tcttttaaat gagtttgaca acccxxxxxx       420
     xxxxxxxxxx xxxxxxxxxx xxxxxxgaaa atcaccgaat tggcttccag tcataactct       480
     aatcaaattt gtaaatgtga tgtggcccgc gtgaatcttg cctattgcac caaatggccc       540
     gtgttttaat tgagtttgac cacccctg                                          568
//
ID   hAT-N25_DTa repbase;    DNA;    INV; 492 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N25_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-492
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6163-6163 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 492 BP; 151 A; 73 C; 83 G; 185 T; 0 other;
     tagagatgca aaaccatcga tgtaactttc gatattatcg atgtttttaa aaacggcgat        60
     acatcgatgt agtttttcaa ccatcgatgt atcactaaga gaaagagacg ctaagcagcc       120
     gtaagtaaac ttgataaatg agcacatttt ttccaatatt ttaagttttg ctacagtttc       180
     tttcatttga aaccccttag ggcggttcct cgttgtggat gaagtgtagt tttttaagaa       240
     atggactgaa gttttttttt attttatttt ctttattttc gttttgttct tcatggatct       300
     caatttttcg ttaaataaat ataagttagt attaaggttc agcaaaacaa tcattttatt       360
     agcaattgga tcaatttatg ggaaatttaa aaaattaaac aaattttcga tggtttcagc       420
     gatatatcga ggttttcaac catcgattgt gaaaacatcg atgtacccac catcgatggt       480
     tttgcatctc ta                                                           492
//
ID   hAT-N25_LMi repbase;    DNA;    INV; 1739 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1739
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3211-3211 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1739 BP; 525 A; 318 C; 346 G; 549 T; 1 other;
     tagggtgacc agacgtcccg tattttacgg gatcgtccct tattttgcaa gtgtcccgtt        60
     gtcccgacaa aataaatacg ggacgtatat tgtcccgtat tttactaacc gtcccatata       120
     ttttgaatta acatttttaa agtaatgtta gcgtaaccaa acggagaaca aatgtagtca       180
     taatcaagca atgaaggaaa taggcttcag ctcaaaggga atgaggcacg atttttgacg       240
     taattctttc atatatttcc aatatttcaa cctttggggg cgatcttttt ttattttaaa       300
     tgcaaaaaag catagggtgc ccaaaatcgc tatataattt taaagcattc ttgggcaacc       360
     tatgattttt tgcatttaag taatgctttc acacgacatg tgcaagtctt ccaactatac       420
     aaattcagtg attaatgaat tcattgcaag aagacagcgt gctgaaagag tctgatttct       480
     tggacatttt aagttcattt cacgagacgt taactgatta tatcgcgaaa tgggcttacc       540
     catttcatgt gctgaacgca tttaactagt ctcagctcaa atatcctctt ctatggaagt       600
     ctgttcagta aagaattaaa aatttacctg agtttgatga aaatattttg caagaaagat       660
     gtgaagatca gcttattgag aaagtgaacc atcttcaaaa tatacgtgaa gagaaaattt       720
     attaattgag aactgtgtag cgagttggta aaaactggtc tctcattttc aacttatttg       780
     catctgaaga tatctggagc aaatgctgat gtggacacag tgttctccgt cacaaatatt       840
     ttatggactg cgaaaacaac atatttagtg tgcaaactgt gaaggaagta attataataa       900
     gaactcattt tcacaatact tcatgtggtg atcattatgt gaaaataccg acctccggaa       960
     tgacacacat tcttctgcaa aatataattc acagagaaat acgtaaagtg cgtaagtaat      1020
     cataactgtc tttcttgctt gtctgcatgt gagaactata aaagaaaaag tatttcttta      1080
     attagtaatg caatttattt ggcttttagt tgtgcgagta gtttgttcaa aatgttcaaa      1140
     tgtttgtaaa cctattggac caaactgcta tggtcatcag tccctagact tacaaactac      1200
     tttaacttac ttaactaaag acaacacaca cccatggccs aggaaggact ctaacctccg      1260
     acggcgagca accgcgcgct ccgcagcaag gcgccttaga acgctcggcc actccgcggc      1320
     gagtagctat gtttggttaa tttttgtatt agcatctgac ttggtatgtc ttagttactg      1380
     agattgtacc ttatatgtag tttgtcccgt cccaaaaacc cgtaattccg atgcttgtcc      1440
     cgttgctttc atgttcttta agcaattaaa tacttttcct gttgtggtaa tagttttcta      1500
     aaataagtga tttcgaaatg taaatacgag aaccaccgaa tacgacacgt tagcttgggg      1560
     agcagggggg gggggaggaa gggggggggg gaacactggc tttgtccact atactgtgtg      1620
     tgcatcaatt cgtgtgttta tgtatgcgtt aatgctacag gtaaaggcaa catttagtgt      1680
     cacacgcatc ggtacccata tgtgtcccgt atttttattt tggaaatctg gtcacccta       1739
//
ID   hAT-N26_DTa repbase;    DNA;    INV; 680 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N26_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-680
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6164-6164 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 680 BP; 219 A; 131 C; 120 G; 210 T; 0 other;
     tagagacctg cacgagtaag taaaaatata ctcgattact actcggcgat gccgattcca        60
     actgtcaaat ctggaatcgt ggcatcgtag aatcgtaggc atcggcatcg ttttactcat       120
     atctgactcg tgttttttta ttaaacaaaa tcaaccaaaa ttcttgtcag aacaagagga       180
     accaatatac ccaagatttc acaattgtta gtcctatcta cttaagacca tagattaact       240
     ctttgacaat atgagaccgc gaattctttg gaacaagaga attttttttt atgttttacc       300
     gtctttgaac ccgacataca cgaaatctta accaaaatga gaccgcgaat tctttggaag       360
     aagaagaacc aataaaggac catgtccaaa acacgtatgg atttgttgtc tttaactagg       420
     tttttctatt cacgaattct aaaaaaaatg tacccgcgaa ttctttagaa gaagaggaaa       480
     ttttattgaa atttattttt aaatgtcaaa tttgaaattt gttggcgatg ctacgatgct       540
     actcgtacga ttctacgatg ccgagtatac tcggcatcgt ttgacacgat tacatgatta       600
     caaaaaataa tcgtggcatc gccaacttga ttacttttac tcgtggaatc ggcatcggca       660
     tcgtatcgtg caggtctcta                                                   680
//
ID   hAT-N26_LMi repbase;    DNA;    INV; 217 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-217
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3212-3212 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 217 BP; 22 A; 89 C; 83 G; 23 T; 0 other;
     caggcatggc caaacaccgc cccgcgggcg cgggcgccct cgccgtgccc gcgccgccgc        60
     ccgcgggcgg cctttgccgc gcccctgccc cgcgcactgt gcgcagcggc gtgtggggca       120
     ctagcgacac acggtcgcgg ccggggcggt caactacagt gtactccgcc cgcggggcgc       180
     gggcgcgccc gccgggcgga aatgttggcc atgcctg                                217
//
ID   hAT-N26_RPr repbase;    DNA;    INV; 414 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N26_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-414
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3368-3368 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 414 BP; 140 A; 78 C; 86 G; 110 T; 0 other;
     cagtggttcc caacctgtgg tccgcaagaa ctaaaatatg gtccgcgaaa cacttaacat        60
     ttttaaaata ataatatatt tatttgacat gcggccgcgt gtgcggcgac ggcgcggtga       120
     gtgggacgtc gagcgagctt agagcgccta aaaacaagtc caggagtcga ctaaaagcaa       180
     atgatgatgt gcgtgtcgct ttgagcaatc tcatcaatcc caggattacc catcttgtta       240
     agaaaatgca agctcaaaaa gcacattaat ataactgaaa acataatcac aatgttaatt       300
     gaagtttatt tttaaaatct aaaagtagtt tattgtgata ttgaaccttg tggtccctgc       360
     taacaacaaa aatattaaaa tggtccctgg tcataaaaag gttgggaacc actg             414
//
ID   hAT-N27_DTa repbase;    DNA;    INV; 1297 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N27_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1297
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6165-6165 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1297 BP; 426 A; 231 C; 230 G; 410 T; 0 other;
     tagagccctg cacaagtaac ctgacttgtt tgtcaaacct taaacccaac cgacctactt        60
     gaaacccatt tgacttgggt cgtttgggtt tgggtatttg ggtaagtgag tcaattttta       120
     cccaaaccca aacgacccaa acccaaacga cccaagtcaa atgggtttca agtagaacag       180
     ttcaggttta aggttaccca aagaaaaaaa attgattttt aaataagacg atgatcacaa       240
     ttttcacagc tcatcgaccc gtcgcgaatt cttaaggtca agatggttat ctgtgtataa       300
     tatttaaaat taaaggatac gatatatcga catttgtttc cacatcctcc gcccatgcga       360
     attcttttgg tcttcaaata ttacagatgt atgatccaca aaaacaaatt ctcttgctct       420
     aaagaattcg cggtttttga aaaatcaata tagaacatat tattaggttt cttagttaag       480
     ttatgtatga tccacacaaa taaatcctct tgttcctaag aattcgcggt ttgtgaagaa       540
     ttaataatta tagagccaag tataagcatt agtgccttag ctaagaagaa cacggtccaa       600
     ccaatctgaa gatcctcctg ttcttaagaa ttcgcgggtt ggaagaatta atataaaatc       660
     tatggaagtt cttaaattaa tcgatttttt caaaaaccgc gaattcttag gattaagagg       720
     atatatttgt gtggattata cataacttaa ctaagaaacc taatggtata ttctatatcg       780
     atttttcaaa aaccgcgaat tcttaggaac aagaggattt atttgtgtgg atcatacata       840
     acttaactaa gaaacccata tgtatatccc atatttattt ttctaaaacc gcgaattctt       900
     tagagcaaaa gaatatgttt ctgtggatca tacatctgta atatttgaag atcaaagaat       960
     tcgcatgggc aaaagaagtg gaaacaaatc ttgaccttta gaattcgcga cgggtcgatg      1020
     agctgtgaaa attgtcatca tcgtcttatt taaaaatcca ttttttttct ttgggtaacc      1080
     ttaaacctga actgatctac ttgaaaccca tttgacttgg gtcgtttggg tttgggtatt      1140
     tgggtaaatg ggtaaaattt tacccaaacc caaacgaccc gaaaattttg gggtcgggtt      1200
     gggtaggtaa atttttaaaa gaaagcctga cctacttgac ctgaaatttc gtttgggtac      1260
     ccaaataacc cattttgtat acccatgcag ggctcta                               1297
//
ID   hAT-N27_LMi repbase;    DNA;    INV; 1536 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.12, Created)
DT   08-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1536
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3213-3213 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1536 BP; 407 A; 304 C; 291 G; 534 T; 0 other;
     caggcatggc caaacaccac cccacgggca cgggcgccct tgccccgccc ttttccgcac        60
     tgtgtgcagc ggcgtgttaa tgttaaataa tgacacatta aatatttgtt ttgtttggct       120
     acacagttat tttaattaag atgttaattt tgccattttc aagtcacttg cagtacatac       180
     aacgttttgt acatagttat ataattattt gtgaagtttt aagttatttt aataagtcta       240
     tatatttacg tttttgacac agtatgtgtc ttggagtgtg ttctttcttt ctttcagaag       300
     ttttttcaca gttttatgct ttttaatact ttcaaatgtt atgtttcgtg cactttatta       360
     tttgcactta ttacattttg acagcacagt tcacgccatt gatagtataa aaaatttgca       420
     tttctttttt tgtatgtgtt agctacatgc aaaatgatca tataattcta cacttcaatt       480
     ttttttcgca gtgatataat ttacgttacg taatatctct gttgttttga gcttgaggtg       540
     tcgaaaatta tcctttctct ttaaggaatt caataaaggt ttctaaatat gttaaacagc       600
     ttaatgcaaa tggttttgtt tttcaagaaa gatatgtatt tctgctaatc acatgaatac       660
     tgcgtaatgt gcttatttca ttaaagaata aagttattgc tttggcgaat gaaaaaaggt       720
     agcaaatata tattagtgct aaaatcccga ttataaaagt actctacgac attgccatct       780
     ccacttagta gcctcactgt gttgcaaaaa atgccttcct tcgtttcccc ttgcagcgtt       840
     tggcatatag ccgtctcact cccacacatg ctgcaggcat tgcagtggtg ggggaagtag       900
     tgcgcccgtc aaaacggctc gcgcccgaag tgcgctagca tcttttcaga ggaactgggg       960
     gaaaatgcac ctaaaaccaa tcttttttgt tagttttttt gtgttttaac aaaaaatatt      1020
     tacttgtaag aatgagactc tatagccctt acataaaatt atttttaaaa tagcatattt      1080
     atgatactag ttcatttaag aaacatatat ctttcagaag aagcctactg tatatatgac      1140
     gagtgtgcat gtacaatact aatagaatca aatttgggtc acaaaattac taagtttttc      1200
     ttcgattcgt gttttggata ttttctaaag cttcgcgtag tgattctgcc atacaaacac      1260
     taattgttac ctaaacagta aatggtttgc ttgttttacc gttcttcgac cacattacag      1320
     agctgcgctt cctctgttac ttcgtttacg ttggatctga ccgcgggaca gtccagcgca      1380
     gagcagtgct gtgcggtctc actctttccg cagctatctc tctcgctccg ttgccgacac      1440
     tagcgacaca cggtcgcggc cggggcggtg aactacagtg tactccgccc gcggggcgcg      1500
     ggcgcgcccg ccgggcggaa atgttggcca tgcctg                                1536
//
ID   hAT-N27_RPr repbase;    DNA;    INV; 840 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N27_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-840
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3369-3369 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Satellite sequences are masked out.
XX
SQ   Sequence 840 BP; 267 A; 141 C; 139 G; 269 T; 24 other;
     cagggccgga ttttcctata ggctaactag gcttcagcct agggcctcaa gatcaagagg        60
     ggcctacatt caaattgtta gcaaaattaa aattacacta ttttaaaaac ataacatatt       120
     atatattaac atttaacata ttgatatata tcacagtagt gattttttta ttatttctca       180
     tgtaatttac aaacttaaaa atgggaggtg aaagggcctt ataagtggaa tagcctaggg       240
     cctcttttca tctaaatcag gccctggtct tacacaccct cttttcgcag aagtaacctt       300
     aatctaattt ccctggaaaa tggttctaga taaaagttac agatctcgta tgcgaggtga       360
     gtttaaagga atcgtaggag ccgtgttcga gaaaaaaaac aacctgxxxx xxxxxxxxxx       420
     xxxxxxxxxx aggttttcaa atgggttcaa atttcaaacc ttcatatctc tctttttatt       480
     aatccgattt caatgaattc tttaccgaat gatagagaaa cgttttctct atatccgaca       540
     taaattgcat ttttgtagta tgaatagttt caggcagggc cggattttcc tataggctaa       600
     ctaggcttca gcctagggcc tcaagatcaa gaggggccta cattcaaatt gttagcaaaa       660
     ttaaaattac tctattttaa aaacataaca tattatatat taacatttaa catattgata       720
     tatatcacag tagtgatttt tttattattt ctcatgtaat ttacaaactt aaaaatggga       780
     ggtgaaaggg ccttataagt ggaatagcct agggcctctt ttcatctaaa tccggccctg       840
//
ID   hAT-N28_DTa repbase;    DNA;    INV; 1255 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N28_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1255
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6166-6166 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1255 BP; 423 A; 212 C; 198 G; 422 T; 0 other;
     cagagcatgt aaaaaacagt tgactatttc tagctgtctc aaaataactc tcactttggg        60
     accctttgag caaatagtca catagaaact gtttatttcc tttcaaaggg ttttcggtct       120
     ttgctcaacc agtaaccgat ttttttgttt caaaacggtt tcggttgatc aaagaccgtt       180
     tgaactgaac ggagaacaaa aacggtcttt tgacttttta tacctatgtg tttaaacaca       240
     gaagatgttc tatactccaa aaatgttgtt tgttttttcc aaatatttta aacctaatta       300
     catgttttaa atttaatttt taaaaataat tccatttttt atttataaaa atcttaaaca       360
     aagagtattt tggattttat tgtgtcttaa gcttgaacgc aaagtacaga actttagcag       420
     accaatattt ccagttatat ttttacctaa tgtaaaatat gaaaaaccgc gagttcttca       480
     gaagattatg gaagatgaag atgatttact cggataatac tatctcttag acgctttatc       540
     aaacaaaata aaaaaccgcg agttcttcag aagatgatgg tcattatgta tatttactcg       600
     tataacacca tcacttagag gctatatctt acaagactta aatccgcgaa ttcttcagga       660
     gatgatggcc attgtatatc tttactcgta taacagcatc accaatggcg ttttatcata       720
     aaacttgaaa acagcgtatt ctttagaaac cgcgagttct tcagaagatg atggcctttg       780
     tatgtcttta ctcttataac agcatcacca atggcgcttt atcataaaac ttgaaaacag       840
     cgtattcttt agaagataat ggtaacagta attgtaatgc acctggtgct aataattaag       900
     ttatttacca tatatgtatt ttcaaatata tgttctatat attaccttaa atttttaaag       960
     gtgtaaggca aaggaaaggc agaactgtca aaaaagaccg tttttactga gcatttcaaa      1020
     gttttgttca tctactaaca gttttttggg accgtttcat acaaacggtc ccaaaaatcg      1080
     gttttttgaa ggaccgaaaa aatttatttt cagtcgagaa cggtcaaccg aaaaccgaaa      1140
     caaactgaaa tgaagggttt cgctcagacc gaaaccaaat ttttaaattt ttttcggttt      1200
     cgttcagacc gagacagcaa acgaaaaaac gatcaactgt tttttacatg ctctg           1255
//
ID   hAT-N28_LMi repbase;    DNA;    INV; 1070 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1070
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3214-3214 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1070 BP; 352 A; 216 C; 220 G; 282 T; 0 other;
     tagagatggg caaactagtt catttttggg aactagttca ctgatgatcg ttcctttttg        60
     ggaaccgttc ctttctactc gttcaccgtt ccttttttat ccaattatta tccaataaca       120
     gataatcaaa atagttagaa actgagtagt tggtttataa aagctgaaca ataatttctg       180
     agataaaaag taaatacgat attattgcag tctacatctt tcgaaatcga aatccctttt       240
     cctactcagc cgatatcacg cacaactatt tttttttcat tttttacgca aaaaacctaa       300
     caagtaggta gcacaaagaa acttaaaaat tgcagccacc taagtgtcac atatcggcta       360
     gggaggaaag ggaaaaatct atttatttga acactcttac actacatttt agggaaatga       420
     ttaaaagtta cgtgaaaaac taaatattaa atgaagcaga tgaaatctaa aaatgtacga       480
     ataataataa aaaactcgcg agaattatgt cttctgccgt tgataaaaat tacgaagaaa       540
     taagcagatt tgcctttatg atgcctgtaa aacgtatgta ttacacagaa tgcaattttt       600
     atgcgcgtta agttacaaaa ttataaaata cctgtaaaat gtaaattact ggtgatggac       660
     gctgaacaga atacgcgaag aaccagtagt tcaaagttca aaaagagtct gaaacacaat       720
     gagaatgggc gagcgcagtg aacaaaacgg acgacagctc gataccgagc agtgagctgg       780
     aactgaggaa ctgaaacaga gtgaccggaa cgggaccgcc tgcctggaac tggaacggcc       840
     acgcgcagtt cctggaactg aagtcgccgc aaccgttccg gacgacagtt cctggaactg       900
     gaagtcgcgc aaccgttccg gcgttcggac cgggaccgtc gaatgggacc gactaggagc       960
     acctaagtga acggcgaact gccgttcctc gtatgtagtt cctcggtcct tcagttcact      1020
     tttgtgaacc gttcctttgg aaccgttcgt tcgcgaacga cccatctcta                 1070
//
ID   hAT-N28_RPr repbase;    DNA;    INV; 633 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N28_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-633
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3370-3370 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. S.
XX
SQ   Sequence 633 BP; 199 A; 117 C; 107 G; 210 T; 0 other;
     caggggtcgg caacgtgcgg cccgcgggcc gcttgcggcc cttttaacat tttcctgcgg        60
     cccgcggcac aaaacggcaa ataataaaaa tttaaatcat aaaatatttc aaattttatg       120
     ttaataaagt ttggtaattt tcgctagtac aattattgtc tcagcgttca aatcttatat       180
     tagtaatccg cgctctttct ttgtatgatc actcgacttt tagtacgcca tttttacacc       240
     gacacaaagc gtgttgtcgc cgtcgaagct gcggattttc gcttcttctc tagttattta       300
     ttttatggtg atatataaat gtgaatgcaa tcgcattatt tttatttcgt ctggctttta       360
     atagaaaaaa tgatgaagga agatatgaag caatttcata gaagtaacta atgccgtttt       420
     tttgttgatt tgttaataaa tttcatttta attaataatc tgtattataa atagataaaa       480
     acaattaata cataagaacc cgaaataaat ataaaaagaa atatatatgt atatactgcg       540
     gccctcggta ataaaccaat aaccttttgc ggccctcggt aataaaccaa tacccctatg       600
     tggcccttta cagaaaaagg ttgccgaccc ctg                                    633
//
ID   hAT-N29_DTa repbase;    DNA;    INV; 977 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N29_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-977
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6167-6167 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 977 BP; 339 A; 182 C; 170 G; 285 T; 1 other;
     tagaggtgga gaaaaaatcg atgggaaaat cgatagatcg atgtttgatg atattttaca        60
     aacatcgatg ttccatcgaa aaaacatcga tgtttttttg aagtaaaaat caaattttgt       120
     tacgttttcc gagctgaact ggtcagagat atttgtaaaa ttaaaaaaca aaatgcttat       180
     acatatgaac acatgcattc cgaatataaa tggaaaacta atttctaaag cgtgcactgt       240
     acaggcacga caaaggaaaa ctgcaagccc tcatctccga aacggaaacg ggaaggctac       300
     actgtttgcc agcaattcaa aagatctgag gataaggcca ttgagtaata ctctagatta       360
     gcggactcac ccccgaaatt cgcgaaaaaa gtatcttcga tggaccgcga tttcttaaga       420
     actctcatct ctcaaaagaa atcgctgtcc aagggggatt atattaaatt cttaagaaat       480
     cgcggtccat cgaggatact tttttcgcga atttcggggg tgagtccgct aatctagagt       540
     attaccggcc attgcaatct gcagttactg gggaaaatct ttgaaaacat cagggaacac       600
     aataaatatg ataaaacatc tcaagccagc gaatttgtcg agcccatact cttcagattc       660
     aaaacggaaa aaagtaatca attatttttt ctttcttaat ggcccagttt gtacaaattt       720
     atttttattt aaaaacatcg atgtttttcg ttccggtctg tctcctgctc ttggtagtaa       780
     tcttttagct aaaatttaaa taccctctgc aaaggtatat ttatgttcat gtttatatga       840
     gtaaaaacaa ttgcaaatat acgccaagcc aatagaaatg cccattttta gtcaaaamca       900
     tcgaaaaaca tcgatgtttt ttgacaaaaa catcgaaaac atcgatgttc ccaaaaatcg       960
     atatttctcc acctcta                                                      977
//
ID   hAT-N29_LMi repbase;    DNA;    INV; 1122 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1122
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3215-3215 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1122 BP; 357 A; 200 C; 238 G; 327 T; 0 other;
     cagggccggc ccgtccatat aggcaaacta ggcaattgcc tagggcgctc gaatttgggg        60
     ggcggcaaat ttgtcgtgcg cgacgaaccc tcgtgcgctc gcggtgcggt ttactttgct       120
     gttgcgctgc ggttccagga gcgatgaatt cccggttact acacatagac agagcaacag       180
     gcaagagaca agacgcaagt caatgttaca tgcattctct ttgactcttc agaattttgc       240
     tagtaagcgt ttaatgaata gacgagtagc agtttgcaac taatcatccc gtgatcaaag       300
     ctggcgatac tgcaataaat tcaactgacg agagatttca tcagattaac aacctaaatc       360
     gtgtatttgg ctgtctgtac aacatacatg atgtacaaaa taaaactccc aaagctgttc       420
     ttgaagaatg tgttaatttg gaagagtctc taactcacaa agactctaaa gatattgatg       480
     ccactgatct atgcaatgaa ttacaagcca ttgctagcag agtacccaat aactcagggt       540
     cacaggacgt tctgagttat atttgtaaaa atggacttat agacattgta cctaatttag       600
     ttactgcact aagagtgttg cttactcttc ctgtgtctgt agccagtggt gagcgcagct       660
     tctcgaaatt aaaactataa aaacatatct gcgatccaca atgactcaag aaagacttgt       720
     ggggttggca actttgtcaa ttgaacgaga aacagcagac acaattgatt taaaggagat       780
     cgtctcagat tttgcaaaag ccaaggcaag aaaaatgaaa tttgtgtgac tctttgtata       840
     atgaagctta taattgtatc aattattgta aactatcaac caaaaccttt ttaaaagaca       900
     aaatgtaaaa acgatgaaaa agtaacatta ttgtataaaa gtgtatgatg tgtcccattt       960
     taatggggaa atatgtttat gtaatgtata tgttgtgatt atgtatttga ataaaaaaag      1020
     atgcaatgtg tattttacat tgatgtttta ttgcgatttt attaaatggg gcgccattaa      1080
     aataatttgc ctagggcgcc gaatttgttc gggccggccc tg                         1122
//
ID   hAT-N29_RPr repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N29_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-335
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3371-3371 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 335 BP; 87 A; 46 C; 76 G; 126 T; 0 other;
     caggggttcc caacctgggg tgctcgcacc ccctgggggt gcgagacgat attccagggg        60
     gtgcgagaaa agtccaggta aataatagga tattattatt attcaaatat ttttcatatt       120
     tttatttctc atgattaaga tattcattga gcttgttaga aaacatctca tttgttttcg       180
     ttttattgag tatatttcac atcttgggtt gttattatac tttttttttt tttttgttat       240
     atttatcctt gagcaaaata taaatttcag ggggtgtgag gttcgagtga aatttcttta       300
     ggggtacggg gcgaaaaaaa ggttgggaac cactg                                  335
//
ID   hAT-N2B_LMi repbase;    DNA;    INV; 1564 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1564
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3060-3060 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1564 BP; 442 A; 332 C; 375 G; 414 T; 1 other;
     cagtggcgta gctacgtcac caagggcccc ggggcaaaaa tgacattggg gccctcttta        60
     aactaaaact gtataccgat gcaaaactat ttcatcagct ccttaccgcc cactggaaga       120
     aataataagg caaacctaaa tactgctaag taaattatgt gtcacgcagc agataatata       180
     gttataactg taaaagtttg tttgtttggt atgcttttac gcaaaaatta ctgggtgcat       240
     ttggatgaaa ttttgccgag ggacagagtt ggacctgggc aggacatgca gataaaacga       300
     ccccatgctc cataccgatc agacttattt cgttgaatag cccagtcaaa gaaagaaaat       360
     aggggaaata ttcgtgtagg atggtttcag caaaaggaag ttgccggatt ttgcatgatg       420
     aaacactttg tattgagccg tgccgctacc aggctgcatg aagtaataag taaaataacg       480
     taagtcgaca tcttcgctta ttatgacgac actggggtag agggcagcgt ctagaatgca       540
     caattcacta ttgtgacaaa gtaaccatat tttctcttct tcttgcatgc atttcagagt       600
     gcagttggtt acagcacttc attgggatct atgattaagg agcactccct tgggggaatt       660
     cactatacaa acagtttagt taccataata ataccgttct gtaataatac attgtacagg       720
     cttcatattc aaatgtggtc acaccgtgta ttgtcaaaca cactgctagt aattcgccgc       780
     cattcactgt tatatcgcaa agattggcag ccatggcaac tccgacttca accgacaaca       840
     cactaacggt ggcagggtcg cgtcttagcg gacaagcaat agacattgtt atgtttatat       900
     tctgaggtgg gaataatatt tggatttcac ttcgtgcgtt tgaggtttgt tgctcagggt       960
     tcaaaaagtt aataaagctt gaaaatcctt cattcaacta aaatattata tacagtagat      1020
     cgtcgactat ccgaagtaat tgggagacat ggatgttcgg aaaaccgatt attcgtataa      1080
     tcaaactgta catttctatt tgccaataag aagtactgta gagtaaatgt atttattcag      1140
     tatttggagg tgctcgatcc ttcgcactgt gccgagcggc acgccgcwac actgcgaagg      1200
     cgcagttgtt gctgtgagca gctttgatgc tgcctctgct tctgctgcaa cgccgactga      1260
     agtgtgccga ttgttgtaca cagcgactgg cggcttggaa gatcagcagc accaccgagc      1320
     ggcgtcttgt gaaggcccca ctaaaagcaa tgttccgcca cccggtggcc cagtgcggct      1380
     actgtgggaa acttggtttg agggcaggtg gagataatgg acggtagggt gggagagcaa      1440
     aaacaaaaaa tcgatagtct actgtaactt ttttcaaacg tcgctcacgg aggccgaggg      1500
     ggcccctaga gctcgggggc cccggggcac tgccccgcct agccctatga tagctacgcc      1560
     actg                                                                   1564
//
ID   hAT-N2C_LMi repbase;    DNA;    INV; 1422 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1422
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2927-2927 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1422 BP; 419 A; 287 C; 317 G; 399 T; 0 other;
     cagtggcgta gctatgtcac caagggcccc ggggcaaaaa tgacattggg gccctcttta        60
     aactaaaact atgcaaaact acttcatcat cagttcctta ccgcctactg gaagacataa       120
     taaggcaaac ctaaatacta ttaagtaaat tattatgtgt cacgcagcag ataatattta       180
     attgtactct caaatataat tataactgtg aaagttggtt tgtttgttat gctttcacgc       240
     aaaagttact gggcggattt gaatgaaatt ttgcagaggg atagatttgg acctgggtag       300
     gacataaaga taaacgacct cttgggatag tttccgaagt tgctccatac taggtgaatg       360
     aagtcgcagg cataagctag taaaaaataa acaatgaaga agtattactt aaccatgaaa       420
     acatggcccc ctgccgcgaa gcaaaccggg aacagtcaag tccgcggtga cagcaggcgg       480
     actgttgtca gtaccgacat ctcactgtcg ctaaactcct cgctgttagg tcattgctcc       540
     gtaccgatca gcctaatttc gttgatagcc caatcaaaga aggaaaatag gggaaatatt       600
     cgtgtaggat ggtttcagaa aagaaagttg ccggattttg tttgatggaa tactttggtt       660
     tgagccgtgc ccctaccagg cttcatgaag tatatattaa tgtctggcca ggaaaaagta       720
     ataagtaaaa taactaagtt gacatcttcg cttattatag tggcagtggg gtacagggta       780
     gtgtcttgaa tgcacaattt actattgtga caaagtaacc atattttctc ttcttcttgc       840
     acgaatttca gagtgcaatt ggttacagca cttcattggg atctatgatt atggagcaca       900
     cccttgggga attcactaca caaacagttg agttaccata ataataccgt tctgtaataa       960
     tacattgtag agacttcata ttcaaatgtg gtcacactgt ctactgtcaa acactgtgct      1020
     agtaattcag caccattcac tgttatttcg caaagattgg caggcacggc aactccgact      1080
     tcaaccgaca atacgctgac gatggcaggg tccacgtctt agcggacaag caaaggacct      1140
     tgttatgttt atattctggg gtgcgaataa tttttggatt tcacttcgtg cgtttgaggt      1200
     ttgttggtca gggttcaaaa agttcaaagt cggaaaacct tcattcaact aaattattat      1260
     atacagttga acttcgatta tccgaagtaa ttggcggaca tgaaagtgtt caaggatcta      1320
     cggtaacttt tttcgaacgt cgctcacgta ggccgagggg ccccttgagc tcgggggccc      1380
     cggggcactg ccccgcctag ccctatgata gctacgccac tg                         1422
//
ID   hAT-N2_AAe  repbase;    DNA;    INV; 2705 BP.
XX
AC   .
XX
DT   29-NOV-2018 (Rel. 26.01, Created)
DT   29-NOV-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2705
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2705
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 152-152 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 2705 BP; 922 A; 444 C; 409 G; 920 T; 10 other;
     cagggtgtct actacctgga aaaacctgga aaacctggaa ttatcaggga attttattca        60
     acctggaaaa aacctggaat tctcagggaa tttcgactat actcagggaa aatatttcaa       120
     atcagtaatt catggtagaa tattgccttt ttgtaacaca aaatctcttc aatcaacaaa       180
     attttcggct gcgccgctat ttttgatgtt tagtcattta atttataatc atttctattt       240
     acttaggact taggattgcc aaaatggtaa aggcaagtac gattcccaat tccagttgga       300
     tttctttcaa gagcatatga aataaataat tttgtaggaa aagattgaag atcacaacag       360
     gtacgaaaaa tagtatattt tcaagttagc aggtctcttt tgaaaggctt gattattttt       420
     ggtctctaac gaaattttaa tcaatatggt ctctaaagtc actaaagtca aagccataac       480
     tctcccatgt tagcttcaga gcttcattaa ttttcaatga acttgggaca taccgaacca       540
     gatgaatact agaatatgat tcttaacaca tcagattaat ccaaaagtca actgttcaaa       600
     tagtaaaact attgataaac aatcaattaa ctattgtaaa acaaccaaaa aatgttaaac       660
     tggttttgaa aaataaacta tttgaaacat tgtttgttca attactttta atattttttc       720
     atgaagaaat agttgatcaa agttgtgctt gcagtgaatt ctsgtgcaac attctagagg       780
     cattagaaaa accttctgag actattacgt aactatttct ccagagattc cttctggaat       840
     actatcaaat actccaccag tgatgccacc agaaaatttc aatggatgct tacaggaatt       900
     tcttcagaat ttagtccaga aacttctaga gcactcctac gctacaacct ccagtaattt       960
     tcacagagat tactctgaag aaaaaactct cagtatttcc tggaatcgtt caaaacttcc      1020
     ttaaggcatt attcgatgaa atctgttata aacttttcca agaattcctc gataaattgc      1080
     atctgggatt ccttctgaag ttcctcttat ttcatccaaa tactattgct ttgaaccact      1140
     tcactaacat ttttcaaatt caatatccaa atctccatgg attcttctaa agttcattca      1200
     aggttccacg ccagtttttk ctmcgatcat ttatagatat ttktkcatgg attctgtcgg      1260
     aatttcttca aaaagccaag aacattattc aaagcttcga ttttttgtta tcttagcaat      1320
     ttatcaagaa aatctttgaa agaaattcat caagaatcmw ggagttmmaa atatcctcat      1380
     aggaattcat cattcatcag tgccatcaga aattacacta ggatattctt tggaaactcc      1440
     tcgcggattt ttmaaaattt tccataaaca atctgaaaat ttttattgac attttcctga      1500
     agacaaccca ggatgaatga ctgaaaaaaa tcttcaaagc ttcgaaaatc ccaaggaagg      1560
     ttttaaaaaa aaattggggt gagtcctagg aaaataaatg aaggaatcaa tggataaatt      1620
     tccggagaac ttgggacttc cttgaaaaat gtctgaaacg atttttggag caattcatga      1680
     tggaatcatc aaagtaattt cttcgccatg ataaagaacc aacaaatatt tatgatgatc      1740
     ttttgaacta aaaccatggc tcgtataaaa aaaactgtag gaaaccatcc gtggtagatg      1800
     taggagtgta gttttaatga aatagcctgg ttcttcgtag aaacaaatca tattaatttt      1860
     ttgaaggtat ctaaacgatt cttcgaagaa ttacataaca agttcgtaaa aatcacaaaa      1920
     caaactcttg aagcggtctt cggagtaata tatgaaagaa attcacagtg aaacgatcag      1980
     tacttaatac ttgtcataat ttcacgagga aggcttagaa atatgcttaa tatttgttca      2040
     aatgaggaat caaattctca tgtcgtggtt cttgttaggt ttatttttat attcattttt      2100
     cattcttttt tgagttcttg tttttttcag gttagagttc tcaaaagttc ttatttctta      2160
     ggctatccgt cactactagt cctgtttccc ccatgatatc atctaggaaa aaatataaaa      2220
     cggcctccag agaaaattct gggtgtcgcg ggatgtccat aaatctgaat ttcattttaa      2280
     gggaaagttt atttttttct ttaagatcaa atagaatatt ttttcatatc tggttttgat      2340
     gactaaagac actttcagag cattatataa acatttttgt ttttcgtaga aattgaatta      2400
     taaacaccag atttctctaa attttccgta tgttgtttac gcatttagaa cgaacagaaa      2460
     aacaaatatt ttttatagaa gttagtacaa ctttgaaatt tatcgttaga tttttttgtt      2520
     taagtgtttc gaagccaaac tacctatcct tgaaaataaa tttttaatca cctaaatttg      2580
     accattgtca atcatttttg tattttggag attttctcaa acctggaatt atattttgaa      2640
     atctggaaaa acctggaaat atcagggaat taaatttcaa tttctgtaaa tgagtagaca      2700
     ccctg                                                                  2705
//
ID   hAT-N2_AP   repbase;    DNA;    INV; 735 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2_AP.
XX
NM   hAT-N2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-735
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2101-2101 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 735 BP; 249 A; 84 C; 89 G; 312 T; 1 other;
     tagagcgcgg atttctatgc aattgcatat ttttttcctt ttaatatttt tggatttttg        60
     tcagttatct ccacgaatca tcataatttg aagctaatgg tgaaattttt ttttgcatat       120
     ttctgcatat ttaaaggtta ttgcatattt ttgcatattt tggcaaaatt caaaatttat       180
     tgcatattga agcgaaaatt taaaaaaatg tataaaataa tattttgtca agtagaaaaa       240
     ttaaaactaa atttcatagt cactaaataa taatttatat atatatttat ttataacatt       300
     ataagataaa taaataatcg attacgacgt aaacttaatc gctcttgctg tgtcggtcgg       360
     ttatcgacat accactgggc actcggttac atcgtttgtc gttgtctgta aatcgtgaat       420
     atgccgaaac ttgaaatgca tatgattatt aattttaata ataaataaaa ttttaaaaat       480
     aaattaagtt gttcagaaaa tttcctaaat tttttttttt aagcgttaaa gtnattaatt       540
     attataagtt ttattgtaca ttttaaataa ataaaaaatt cttgcatatt ttttacatat       600
     ttttatgatt ttgactgcat atttttacat attttcatga ttttgactgc atattttttg       660
     catattttca tgatttttac tgcatattat atggcatatt tcgatacttt taagtgcata       720
     aaaatccgcg ctcta                                                        735
//
ID   hAT-N2_BTa  repbase;    DNA;    INV; 825 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-825
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 649-649 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 825 BP; 245 A; 169 C; 206 G; 205 T; 0 other;
     cagggccgga ttaagggggt ggccacatgg gccgcggccc atggcggcaa attagggggc        60
     ggcaaatttt gcaatttttt taaatgtagg tataaaaaaa atcggattca gaaaaaaaaa       120
     ttatcaataa gaaaaggaaa caaaatctct ttttcctgag agtatagtaa tttctaattt       180
     tgtcgttttt cggtgataca agagacagca tctttaatta gtcgagttaa gagaggaact       240
     aaacacgcaa ttttgcctgg agctcagcgc agagaggaat gatgacgagg acttgagatg       300
     aaaaggacaa gccctcggcg cggcggtcag catgtaacac atattagcgc ctacaagact       360
     gcatgaatac ttcacccatt gcgccaaaca cagtgcggtc acgcggtcag gagcggttgg       420
     cgtgaaacgc atagcgccta caagactgca ggaatacttc acgcattgcg ccaaacacag       480
     tgcgatcagc gcggcgcagc ggcggaagtt aaaattatta aaccacattt atgtttgttc       540
     tttcataatt ttttggttca tttcttataa atggaggatc ttgtccacac agagataggt       600
     ttacggaact taactttcgc gtcaagttcc gtgaaatttt gctagtagtg ttgacagggc       660
     tttcgcaaaa aaatgtatcc aacacgagta ggtaaacgcg tcttatgcac ccctccccct       720
     ccggcacgtt cacttgatgg tttttattga tgtttcaaaa cgaatgagaa gggggcggca       780
     aaatacaggc ggcccatggg cggcaagtag gtaaatccgg ccctg                       825
//
ID   hAT-N2_DEl  repbase;    DNA;    INV; 390 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-390
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4023-4023 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to consensus. 3'-part is indeterminate.
XX
SQ   Sequence 390 BP; 151 A; 76 C; 59 G; 104 T; 0 other;
     cagggtatcc aaccggtttc gtaaccgtta tccttaaccg gtaaaaccga atcaaaaccg        60
     taaccgaaac cggaaccgat ataatatgtt tttgcctaac cggaaccgta accgaaatat       120
     atagcaacca gaataaccgt taccgatacc gaaacattag taccggttct gtaaaaatgt       180
     gttctttaaa aatacataag tcgtaaaacg tcttaaccat ttaatatgtc agatcctgca       240
     aatgcttttc ttttagagga ttttttttac aatacatatc attgaaaaaa aaaaagaaaa       300
     acgaaaaaca tatgttcatt catacaaaaa tgccgcgacc aaaaacaaat ccctaagttg       360
     tacttagtgt gaaaaaagtg tcgatgagta                                        390
//
ID   hAT-N2_DF   repbase;    DNA;    INV; 1708 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   14-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   Repeat from the Drosophila ficusphila genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   REP-3_DF; hAT-N2_DF.
XX
NM   REP-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1708
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1368-1368 (2012).
XX
RN   [2]
RP   1-1708
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
CC   [2]: Sequence updated and reclassified.
XX
SQ   Sequence 1708 BP; 579 A; 263 C; 281 G; 584 T; 1 other;
     cagggaccgt aaataatgat tattgtcgct attttcaaat gaataaatca atcacttcca        60
     atcaacatag aacaagcatg actagcacgt ttttatcctt taaggataca ctatgaatat       120
     ccttgatgat ttttaatttt taatttttat atttattctt ctattgttaa acattatgtt       180
     tgagcaaaaa aaataaaaat cacaaataat cattattttt gagcaaaaaa aaataaaamt       240
     caaaaataat gattatttgt gatttttatt tttttcgctc aaaataaaac tcaacaagca       300
     acaacttttg atcctttaag gatattacca atattgtcct atgtccttat aaagggaccc       360
     tagagcaaca attgacaaca accgcgtatt aattttattt attgacatat tttaatttga       420
     taataaaaag aagttctgat aaaagtgatg tgtttttttc ggccgaatac cgaataccaa       480
     aaaaagtggc caaataggcc gaataccgaa tactagccga atattcgtga catttctagt       540
     ttcgatatgg gtcgcaagcg aaattttgtt ctccgcaatt tttttaattt ccacgcggga       600
     aataatgttt cggagtgcaa aatttgcaaa tttacgttag ttggcgagta cgtgtgcaac       660
     atgaagcggc atatgcgcga aaacgaagct taaacagctc ttacgccaac tgtggcagtt       720
     gaaggaaaag gttagtaaat tcattttata taaataataa gcaataatta attcaacata       780
     ttttcagatt gatacagatg aagcctgctc aacctctact tgacagagac caattcgctt       840
     tcgcaaaatt ctcagtcttg ctcgctcttg accgagcttt taagtaacat tgaggtcgat       900
     gcccaagagg aagctgacga tgatgggcag caggaattat taaaaggata tgctgaaact       960
     gatagttaca gcccgaagcc catcggccta ggcgctgata taatgcagta ctggagtgag      1020
     aagcaatttc agtacccgaa tttatatcag cttgctaagg tggtgcttgc ggttccagct      1080
     acccaagtta gcgtagagcg tgccttttct gcgcttaaaa taatgctaac cgaccaaagg      1140
     tgcaacttgt cgagcgagtc gctgtcaaaa ttgttattcc taaaattaaa taaaaattat      1200
     aaaaatacat aaatgcataa taaattgaaa attaatgtac ctaattgttc tactggttga      1260
     tcattatgat gattatcatt atcattatca ttattatcat tgttttggta attgtgtata      1320
     tctgctgctg ctgctctgta tgtaacagtt gaccttatat taaataattg caacaaacac      1380
     aggtaaaata cattttattg ttgttgttgt tgttgtcaat tgttgctcta gggtcccttt      1440
     ataaggacat aggacaatat tggtaatatc cttaaaggat caaaagttgt tgcttgttga      1500
     gttttatttt tgagcgaaaa aaataaaaat cacaaataat cattattttt gagttttatt      1560
     tttttttgct caagcttaat gattatttgt gatttttatt ttttttgctc aaaaataatt      1620
     attagtcttg atttaaaaaa ttaaaaatcg ataagtaatc attacaaagt aatttttaaa      1680
     atattactta taatgattac ggtccctg                                         1708
//
ID   hAT-N2_LMi  repbase;    DNA;    INV; 4133 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4133
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3061-3061 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 4133 BP; 1226 A; 909 C; 783 G; 1214 T; 1 other;
     cagtggcgta gctatcatag ggctaggcgg ggcagtgccc cggggccccc gagctccagg        60
     ggcccctcgg ccttcgtgag cgacgatcga aaaagttaca gtagagcgtc gaatttttat       120
     ttaatttttt ttaccctccc accctatcgt ccatcatatc cccttcccct caaaccaagt       180
     ttcccacagt agccgcactg ggccaccggc tggcggaaca atgcttctaa ttgggccttc       240
     acaagacgcc actatgtggc gctgctgaca ggcgaagctg ccagtcaatg tgtccaacaa       300
     tcggcacact tcagtcggca gaagtagcgg cagcatcaga gctgctcaca gcaacagctg       360
     cgccttccaa gtgttgcggc gtgccgctcg gcgcaatgtg aaggatcgcg ctcctccaaa       420
     tacagtataa atacatttac tgtacagtac ttcttattgg caaatagaag tgtacagttc       480
     gaatatccga ataaaccggt tttccgaata tccgtgtccc caaattactt cggataatag       540
     acgttatact gtatataata ttttagttga atgaaggaat ttcgactttt aatttctcct       600
     gccgaaattg accccaacat ggacagttcg ccaattatgt aaggaaatta taacaaaata       660
     tgcattatta gaatgtgagg ttacggaagt atttaccgca gttttattct tctgcagcag       720
     ccgaaaggtc gttcagcaaa ttaaaaatta tcaaaacgca tctgaggtac agtatggctc       780
     aagctcgact cggacatttg gcactcatag caatcgaaaa caaggctgca tcaagtctag       840
     atttaacaga ccttattgat gattttgcaa aaaccaaagc caggaaaaga ttgtaaaata       900
     attgttaaaa taaaattgac tactttttaa ttgtgtaccc atattattac tataatgtac       960
     tgcagtcacg aaaacgctta ccgataatta ccgatcagaa atcatatctt tgccaacatc      1020
     tgcaatctaa cagtttgaag cattgtatta ctccagtagg tattctttca ttctgacttt      1080
     ggtgcgtgag gaaacacgaa cgaaatcccc acgacttgaa aaacgccact cattaagttc      1140
     gtgatacaca gtgaggcgcg aaaaataatt atgaattttt ttcaaggact aatagtattc      1200
     gtgttacaag aaatagaaaa attcccaact tttagaaaac aatgttttaa cacattgact      1260
     gccacgtgag ttaaatataa gtcacaggaa gtcttctctt cgggccacgt gaagtaaata      1320
     caactcacgg acatttttcc atttaaagct ccgtggtgca gttgtaactc acagtagcgt      1380
     gctgtgactt ggtgttacag tacgttatgg ccccagtaac aaatcatgtt cgtggcctcc      1440
     agttttcaag agctcaagag tagttattga cacttgaaat cgtgaattat atataactca      1500
     catggcccag tcatattgga gtttccttgt ttttataatt tattatttgg tgttacatat      1560
     tacttataca gtagattgta tatcacatac agttttaatt acattctcca actctaattg      1620
     caacaacaat gaaacagact gaaaaaaatt gggtaattcc actttgtatc tctaacacct      1680
     gcatgcactg tgctttatga agaaacactc ttcgcaaaaa tatgagtcac aatttcttac      1740
     atttccatgt agtttgtttg catttcttga cagcttgctc tcgtccaaat tcattcttca      1800
     ttttttcgta gcatccgtac acctatgact tgctgctccc atgttcacaa gagcacaatc      1860
     tgcaggcagc tcggtggcta cggtgagaga tttctcaggg gcatcggcat cttctgtatg      1920
     gagtagtctc aaagtcactt cctctttgaa ttctgtgatt gagatgatct tgttgttgat      1980
     gtatcggtaa atcacaagag catttaccag tgctgaccct gtcaacagtt caattgcaag      2040
     cttcctgtac catttcacac cccgccttag acaatatagg acttcatttg gtgagagaga      2100
     tctataaatg actgattata gtcagttatc attgctggtt ttttctttgt gcccctcttg      2160
     gtttgaactt cagcttcttc ctctccatga acagtactca gcatcaacac attcctctta      2220
     tttttccatt tcagtagtat cttcatcttc ttcacttatg tccataactt catctaaaag      2280
     cttctgtaca tgcctttgtt catctacata acttctacga gacactttct cctgctacaa      2340
     tatcactgtg ttacggagca aacaacactg aataaagact gtagtaacaa tgcagaaaaa      2400
     caataatgga actgtacgca aataatgttg tggaatgaaa gacttacagg agtaccaacc      2460
     caaaattatt agcgacatag caaatgacac acctggcact ttactctggc gccatgtgag      2520
     tcatatgtaa ctcacacaaa aaacataaac taaggtacta aattgcaata ttttcaactt      2580
     atttgtactt aaatagctta cttcaagcaa actaaagcag aatatggaaa aaaagtaaat      2640
     ggtccccggg ggtcggtaac ccaagtatac ctttggcagc caatatgtta atatagttat      2700
     tgttaaacag aatggactaa gacaaaatat taaatgtata cagcatattt aagtacagta      2760
     gaacagtatt gggcatatga tttgttgtgg ggatgtgaca ggtgacagca ggaaggggtg      2820
     gggggcagaa ggtgcgggaa agggcagacc gctggaatgg tcaggcattg ccgttctttg      2880
     tgcgcctgca aaacgaatag cgagaaagcg agcccccact ctgtctaccc cattacgtcg      2940
     caaaaggaaa ttacaaggtg ttttacaaag ttataccgac ccttccacag tgcacctcat      3000
     aaatcacaga tgacgtactg cgcagacaga cctggagagt gcgcattttc cacaaaatgc      3060
     gttgcgccag gaaacaggca tgtttatttt ccacaaatgc gttaatactg aaaggaatac      3120
     cgaacagaat ctacatacct ttctacacac taccttgcaa tggwaggcgg gaaatggatt      3180
     cggcattctg tggctttttt ctgggaacgg cgccttccca taccataaga actattcgct      3240
     cttcaattta cgttcatact aacactatac cctccgccgc attctgctca gttcttctat      3300
     gtgaaaaaca aacaacttca ctgtgtttta aagtaatggt gagaattcag cacttcacgc      3360
     aatcttttaa ggtacgtttc tacccgcaca ctatttgttt attctgccat ttaaaggttt      3420
     aattacattc acggatcaga agtttcatgt aataattact ttgtctcaat agtgaattgt      3480
     gcatcaagac gctgccctct accccactgt cacgataata agcgaagata tcgacttagt      3540
     tattttactt attacttttt cctggccaga cactaacata tacttcaaga agcctggtag      3600
     gggcacggct caatccaaag tgtttcatca aacaaaatcc ggcaacttac ttttgatgaa      3660
     accatcctac acgaatattt cccctatttt ccttctttga ctgggctgtc aacgaaatga      3720
     gctaacagcg cagtagttta gcgagagtga gttgtcggca ctgacaaaag tccgcctgct      3780
     gtcaccgctg acgaaaaata tcccatgggg cattttcatc tgtatgtcct acccaggtcc      3840
     aactctatct ctatccctct gcaaaatttc atccaaatca cctagtaatt tttgcgtgaa      3900
     agcataacaa acaaacaaac tttcacaatt atattagaga gtacgattaa atattatctg      3960
     ctgcgtgaca cataataatt tacttagtag tatttaggtt tgccttatta tgtcttccag      4020
     tgggcggtaa ggagctgatg atgaagtagt tttgcatctg tacagtatta gtgtaaagag      4080
     ggccccaatg tcatttttgc cccggggccc ttggtgacat agctacgcca ctg             4133
//
ID   hAT-N2_PPo  repbase;    DNA;    INV; 391 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-N2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-391
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2756-2756 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. ~30bp TIRs. 8bp TSDs. It is an
CC   internally deleted derivative of hAT-N4_RPr.
XX
SQ   Sequence 391 BP; 139 A; 66 C; 71 G; 115 T; 0 other;
     cagtgattcc caaagtggtc tatatcgacc cctaggggtc tatgacaacc tgcaaggggt        60
     ctacgtcagc gaaaaaaaat ttgggggtcc atgaaatgaa aatgggggtc cacgatagtg       120
     gatctcaaca catacactga tagtacctat ttacttacat catactatct tataatatca       180
     aaacatatac attatttatt ttgagtagtt ttaatttaaa ttcaattaat aaatgtataa       240
     attaacatgt gtttttactt taagttttta acactaaact tcactacagt tagaaattta       300
     caggaaatca atatcaggta agtagggggt ctacccaaca cggaaaaaca tggcaagggg       360
     tctacgacac aaaaaagttt ggggaactct g                                      391
//
ID   hAT-N2_RPr  repbase;    DNA;    INV; 482 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N2_RPr; HGT.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-482
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3343-3343 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 8-bp long. Terminal sequences are more than 90%
CC   identical to those  of HAT2_MD, suggesting a horizontal gene
CC   transfer.
XX
SQ   Sequence 482 BP; 120 A; 119 C; 116 G; 127 T; 0 other;
     caggggtccc caaactacgg cccgcgggcc acatgcggcc ccctgaggac atttatccgg        60
     cccccgccgc acttccggaa ggggcatctc tttcattggt ggtcagtgag aggagcacta       120
     tatgtggcgg tgccgcaaag cgctgcgtcg ctcatgtaca gtactacttc cgatgacgcg       180
     ggatgcacgc gtcacggctc cgaaaacagt gtaaaataac agccagaagt aggaagaaag       240
     gcaaagcact ataactaaac cggacattga ccatctcatt agccaaaagc aggtccataa       300
     ttcccacaga aatactgggc agtttggtga tttaaattta cttgttcttt atttgaaata       360
     ttctatttgt tcccgttttg tttttttttt ttactttaaa atagtttgtt ttatagtccg       420
     gccctccaac ggtctgaggg acagtgaact ggccccctgt gtaaaaagtt tggggacccc       480
     tg                                                                      482
//
ID   hAT-N30_DTa repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N30_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-491
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6168-6168 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 491 BP; 156 A; 61 C; 83 G; 191 T; 0 other;
     tagaggtgga gaaacatcga tggaaacatc gatgcatcga tgttttacaa ttttttagaa        60
     acatcgatgt tttttggcga caatcgatgt ttttgtaaca ttaccaattt taaagaaaaa       120
     ggcggaaaat gtgtttttaa tttaagttta ctgtattgac atgattttag atattcaact       180
     ggtggtgtag gatggaagcg gcggtggatt aagcttttca taatactatc ctataatact       240
     ataatgtgaa tatgctgatc acttaaatat tgttgatcaa ttttgtttaa tttttttgcc       300
     gaataaagcc tttgtttatt ttgtttttaa atgaactata taagtttttc agttgggcta       360
     tattattcta ctgatttatt taaaaacaaa ataataataa tttttgtaaa acatcgatgt       420
     ttcactcgat gttcttattg aaaacatcga aaacatcgat gtttgcgaac atcgatgttt       480
     ctccacctct a                                                            491
//
ID   hAT-N30_LMi repbase;    DNA;    INV; 1168 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1168
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3216-3216 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1168 BP; 336 A; 237 C; 224 G; 371 T; 0 other;
     cagtgcttta gttgggccgg tacggggcgg tacggcgtac cgcctaaaat tcaaactcgc        60
     tattagcgta ccggctaaaa ttctttctta aatctgtaaa aaatagacca actgtaaatt       120
     gtcgaatgga tttcggaaag aaaaattgga aagttttagg ttcgttggag ttgcgatcat       180
     aaccgtcgaa gcgttcaaat tgcactttcg cacaattcca tggaatctga ctggcggtca       240
     aatgttcgaa ttagccaatt gagagctccg actagtctga accgagacag aggaaatgct       300
     tcttaccgac tccaaagcgt ttaagaacct tgctccaaag agataagcca ctacatacgc       360
     aaagtctttt gtatgcaata tcgttgccta ttcgttgaag aaagcaagtg cgaaattccg       420
     gcaattcttt taaaaattta agggacagta catcgcaaca ttttgactta atttccattg       480
     atcaaatcat gaaacactgc acgagttacg tatgttttca tgcttagcac gacacgtttt       540
     gagaacgact cactgtcaag ataaaatatt taccgtaaat attatgttta cttaaccgtc       600
     tttttcgcac tgtagtcagt ttaagattat aaaatagtgt gtcgtagcac tagtaggaac       660
     taaaatagaa gcgaatttta atctctttga ccaatgcttc ttcaaccggc tggatgtgta       720
     catgttcaac tgttggtaac gctgccagtt ttgcttcttc cggcggtaaa cgcttggttc       780
     cgtctttaaa agttccacgc agttccattg tccgaatttt gtaatggttt tcgtgtgata       840
     taagtctgct tttaattccc ggcagcaaca cgcactctta ttgtcttctg gaacgccact       900
     cctgattagt tacgataaga tgtcgttgtc caaagccgat gggtggtatc ctcatctaca       960
     ctaaaccctt gaatacaatt aaaatgagtt tcgaatctgt aaattatagc tatattttgt      1020
     tagtgtattc acatgcctaa atctttactt tcttgatttt ctaaaaatgt ccatttgact      1080
     catttcatgt ggaatgagca gagtaccgcc taaaattttt tccgccgagc agagtaccgc      1140
     ctaaattttt tttccaacta aagcactg                                         1168
//
ID   hAT-N30_RPr repbase;    DNA;    INV; 604 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N30_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-604
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3372-3372 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 604 BP; 237 A; 83 C; 102 G; 182 T; 0 other;
     cagggggtct tcaacctggg ttccgcggaa ccctagggtt ccctggaacg ttgacagggg        60
     ttccgcaagt gatcactatt tgctcagcca aaacgcacgt aaaatggaaa tcatctatac       120
     aaggaatttt tcatgtagga acggggtagt ggactgtctt attaaaatat tagattaata       180
     taatatttaa gtaaaaatta caatattaat ataaattgga tataaaaagg cagttgattg       240
     taaaaaataa atataaataa atattttatg gataaaataa aatcttgaaa ttcggtaaaa       300
     gtcacgtgct tcaaatacac caatcaagac gcattaatta ttataaaatt taaaagttaa       360
     ttattcataa aatgtattct agaaaataaa taaaataaaa cctgattcgc tacctcacta       420
     tacaattgtc ttattaagat gtttgtatta agattaaata aagatacaag aataattttg       480
     cgaatttgag tagaaaaaaa gctttgataa actattttat ctgctactta aacatgaggt       540
     tccttcaaga aagaccatga gctccgaagg gttcctaaaa gtgtagaaag gttgaagacc       600
     cctg                                                                    604
//
ID   hAT-N31_DTa repbase;    DNA;    INV; 407 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N31_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-407
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6169-6169 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 407 BP; 132 A; 69 C; 78 G; 128 T; 0 other;
     tagggcgggt cgatttgtat ggggccgaaa aaagtgatga atcgtatagg gggaacgtaa        60
     tctttaaagg attctaagcc atattgtcga acatacttat ggtctaaaat gatgtttgac       120
     cccccccaaa cgcgaatgaa aaatacagct ttttttgagg aaaatatcat agtagtcagc       180
     tcagatgtat tattaaattt aaaataaaaa tttgaaattg atattcagta ctataaatgt       240
     gctgactact atgatatttt tctcaaaaaa acagtatttt tcattcgcgt ttgggggggg       300
     tcaaacatca ttttagacca taagtatgtt cgccaatatg gcttagaatc ctttaaagat       360
     tacgttcccc ctatacgatt tttggggtcc caaatcgacc cacccta                     407
//
ID   hAT-N31_LMi repbase;    DNA;    INV; 1127 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1127
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3217-3217 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1127 BP; 310 A; 254 C; 246 G; 317 T; 0 other;
     taaggcggcc aaccgtcccg gattctgcgg gaccgtcccg gattctaccg tcccgcgttg        60
     ggagactcaa taaaagtgtc ccgcaaaatg cctaatttgt cccgcatttt ggtaattttc       120
     atattccacc gactgcagat tattcccacg tatcttaagc ataagttcat atcctgaatc       180
     ggatttatga gtgtgattat atgcagtaac tgtcgttgtc tagtgtacat aaaaacagaa       240
     ataaatacac aactgagtga aacaccactt gctgttagcc cggggcacca ctcttagttc       300
     tcggaagttg gcagagatct taataggttc cagacgaaaa attccgggtg atgcagaagt       360
     tcaaccggcg attgtttagg ttgtaagtta gtccccgcgg agactcgaca ttgttgattt       420
     gtgtttgcgt gcttccccga tttcggttcg gtgaactaat ttacacgtaa gctattgact       480
     tctcttcctt caataccgct caagtactcg tagtatagta ctgttggacc aatttaatgg       540
     gcttacagtt gactgttgac agagtaaaat ttccgcgatg tcttgcatgt gctacgactg       600
     tctgactggg aaaaacatta tggtcacgtt ttcgtctgaa aataaacagg aagataatga       660
     aaattaccgt cgaggtgcct attattgtgt cctacgtttc tagtgcccgt gtcacaaacc       720
     gaggcacaaa tttctcactc agctaatgaa ggcatacagc aaaacaagaa tttaatagaa       780
     aagtaaaaca ttcgaagcgg tacaaatgtg ggtcctgcga gacataatat aggcgggaca       840
     cgggacattg atttcaaaat tggtactgcc acaaggactt gtaaaaggag ttcccttatt       900
     tacagaagta tacaacacct tcaaagtgcg gtgcaaaacc cccaatgggg tattctcttt       960
     tttttttaat acattgtttc caagtggacg ggcgggcctc attttgtttt gccgccccgg      1020
     gcctccaaca acgttagtcc actagtaaca ctgagtcacg cgttcaaagt cctcatccac      1080
     atcctcgaaa cgtcccgcat tgggatccga agaagttggc cgcctta                    1127
//
ID   hAT-N31_RPr repbase;    DNA;    INV; 409 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N31_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-409
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3373-3373 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 409 BP; 136 A; 87 C; 60 G; 126 T; 0 other;
     cagtgatggg caaactacgg cccgcgggcc aactccggcc cagtgaaagg ttcaatccgg        60
     cccgtcacat attttataat aataattaaa aataacaatt acacttcata tatttgtgag       120
     cagctttttc caataatgaa acttagaaaa agctgtgtca gaaatagatt gacgaatgaa       180
     ccacctcagt tcactcttaa gaataactac gtccccaatt tggaccaaat tatggcggaa       240
     ctattatcaa aacactcgca gcttcataca tcgcattagt ttaattttga tattataaaa       300
     atgtcttact cacttactgt atttttttaa ataaaaaaat tattatggcc cgccaaaaat       360
     ttttcctttt agtttttggc ccgctcctaa aaaagtttgc ccatcactg                   409
//
ID   hAT-N32_LMi repbase;    DNA;    INV; 1523 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1523
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3218-3218 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1523 BP; 484 A; 302 C; 318 G; 419 T; 0 other;
     taaggcggcc aaccgtcccg gattctgacg taccgtcccg cattggaaaa cttcataaaa        60
     gtgtcccgca aaatgcctaa tttgtcccgc aagtcccgca tcccggtaat ttttcacatt       120
     ccaccgactg cagattattc ccacgtatcg taagcattac gaatcaggat atgaagattt       180
     atgacagtga ttatgtgcag tacttttgtt gtctagaaaa gaaataatat ttagtacgac       240
     taggtgaaaa acctgtagct gttagcgcgg ggtgaccact cttaattctc tgagattgat       300
     aacgatctca ataacaatag gttccaaacg aaacgttccg ggagatgccg aagtacaacg       360
     gacggttttt taggttgcaa gttagtccgc gcggagaccc gacattgttg atttgtgttt       420
     gcgtgcttcg ccgggttccg tgaacaaatt tgtttgtttt acttagtaat gccgccgact       480
     attacaaaaa tgaaaaaaaa aatgtcaact gaccaaggac ttgcaaaagg ggttaccttt       540
     tttacagaag tgtacaccac cttcagaagt gcggtgcaaa acgtgtaatg aggtgtcctc       600
     agttgctcac ggcagtaaac atgtcattta acatctgaca aaaataaaag ggctcagacc       660
     gccacagata catcatcact ctcaacttat ttctgtcagg aaaacttcgc tgactaagaa       720
     gaacttgtaa gaaccgaagg tttgtgggct ttccacaatg taagtcacta tcagactttt       780
     atatcgatgg aattgattca aaaagtgttt caaaagaagt ttcgttgcgg gaaaactaag       840
     tgcgaagcag taataaagaa tgtgaaagct tctttttctt tagctaacct tcagacagaa       900
     cttcagaaca aaagactttc catttatcag tatctgtaca gacatttcaa atcacaaaga       960
     cctcaaaata tatccaatat tagtgcggta ctttcatcca aagactggaa ttaatgtaaa      1020
     aatattagat atcctgaatt tccctggtga aactgcagtt attatatatc attcttcaac      1080
     ggacatactg gaaaatcaat gggggaaaga gaaagtcatg gtaattcgtg cagatagtgc      1140
     caatagaaat tttggcggag ttcaacgtga atgacaatgc aaagctttct tcaaacttca      1200
     tgagggagaa aaagagttgg cgtggggtgg gcagcgcata ttgcacacag ctctacacaa      1260
     acatcagcag atttgttacc agtggacgtc gaatatattg ttacgaagat ttattcgtac      1320
     ttttacacag tgcgtgtaga aggtctcaaa atttttgcga acacagaaat gcaatacaaa      1380
     agaatcctgg gatatagtaa aacacgatgg cttgcacttt tgcctgcatt agagagagtc      1440
     ctgacactga gtcgcgtgtt catagtaccc atacacatcc tcgaaacgtc ccgcattggg      1500
     atttgaaaaa gttggccgcc tta                                              1523
//
ID   hAT-N32_RPr repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N32_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-424
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3374-3374 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 424 BP; 126 A; 93 C; 75 G; 130 T; 0 other;
     caggcatgtg caacctacgg cccgagggcc gaatccggcc cgtgtagtga ttttatacgg        60
     cccgcgacga cttttccaaa catcattgaa tctggcccgc taaccctaag ataatgtccg       120
     gtaaagataa ttttaataga gaaataggta tttaatagga aataggtata tagtccaatt       180
     atacaaacaa gttaaaaaaa tttggttctt atcgttttta tttatttata ttaattaaaa       240
     gctccacccc ttgccacgcc cacaggaaac tactctccaa tagtagtgcg attagtaagt       300
     acattgattt gtcgatttaa aaattttttt gctagaccta tattatatcc tgaagtactc       360
     cggcccgcgt aatctttcta ctttccaatc cggcccatag tcctgtaaag gttgcacatg       420
     cctg                                                                    424
//
ID   hAT-N33_LMi repbase;    DNA;    INV; 2437 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2437
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3325-3325 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long. Contains part of
CC   SINE-3_LMi insertion.
XX
SQ   Sequence 2437 BP; 730 A; 437 C; 502 G; 768 T; 0 other;
     cagtagcgta gctagggggg tgcggggggt gcggtccgca ccgggtacca actccaaggg        60
     ggtgacaaaa cttgccagag gtttcttttt tttctttttt tttttttttc cacgctaatg       120
     taccattgtt aatggtctga accgacgggg ctgttgccat tcttcgtcta ttatcgtgag       180
     tgaccggacg ccagagtttt cttccgcaat attcagaaga tcgaatgaaa tatttattca       240
     tttgcacgta agtaaatgga attatttatg aattttttaa tacaactttt tcttcccata       300
     gttgtaagaa agataacaag gggtttcttt tctgctgatg ccaaatgcct gaattttttc       360
     tttttaatga ttttttgaga atcagatgtt tctcccagct ttaaaagtga ttacgatact       420
     tattcagatg ttgctgccac ttttagagta taaacggtca ctgtgttcct ttttcgtgat       480
     ttgaacgtta aaataaacgg ccatttagcc aaaccagccg tattaattat atatcacgaa       540
     tttactttgt gctagggtgt tcaagtggtc aaacgtgcat gaactagtct agcataaaac       600
     cagaactgtt ttccgccgtg gctatcaatg tggtacgtta taatgttcag tgcagagctt       660
     tccgagctgg atgtcacgac acccaggggt gtcgcgtagt gccactaagg gtgtcgcaac       720
     aacagcaaaa tcttaagata aaataagaca gaacattgtg gaaaaaatac taaacatcct       780
     tcagttcgtt cagtgtgcac tttaagtaca agtgaatcat gaaaattaat attccttcaa       840
     agtatcattt atatagataa atctttctaa ttaaaatcag tgtgtttctt gtaaaacttt       900
     atatattcga aatggtgtcg cgactaggaa gagtttggaa agctctggta tagtgtgtaa       960
     gaaaaatcgt agaaaattac aaaaaaatac catatgggtt tattatttga tgcaactgtg      1020
     acgtcaaata gaacaaaatg ttcaaatgtt tgtagagctt atgggactta actacggggt      1080
     catcagtccc taaacttaca aactacttat gaactagcta atactaagga cggcacaaat      1140
     atccatgccc gaggggggat tcgaaccccc gaccgtagtg gccgtgcaga acgtgactgg      1200
     cgcgccgcag accgctcagc cactgcggcc ggctagaaca aatctcctta ctgtttgctg      1260
     ttcatgaata tctgacctcc gtaaaaaatg cataaaagca ttttctccta tacaacaaca      1320
     gacaactgat tactaactta ttgcatttca ggaagattgc tcttttaagc aatatttgac      1380
     taaaaatcta aagacaacta agaagtgttt gctataaatc aatatggaga tttctatttg      1440
     cttgtggacg aagcctttcg atttgcgaag gacacatgtg acgagatggg tattcctgtc      1500
     gaaaaaataa gaaatattag gaagaagaaa atgatgcctg gggaaaaggc tgcagacgag      1560
     acgctgactt tgcaccagga actgagaagg tcaatgttag agtgcatcga cagttccaac      1620
     aagaaattga tacacgttgc agaaacatgg agtgtatatc agaacatttt gctgttttag      1680
     agcccagaaa tccgattcag aaaaggaact tcccatgatt gtaaaatgtt taattgacaa      1740
     ttacgatgag atttctgaag atggtatcct cgcagaaatt ctacggctgc gaagatttct      1800
     gcaggctgct aatgtcccaa aagaagaatc tcttggatgg acatctttaa gagttttaca      1860
     gtttgttgtt gaatatgaaa tttctgaatc tgttccgaac ctcacttttg cattaagatt      1920
     tttcttaact ttgtgtgttt cggtagcgac ctgtgagaga agtttctcaa agctgagact      1980
     cattaagaat taccttagct ctactatgag ccaagcaaga ctctctaatt tggcaatttt      2040
     gtcaactgaa aatagtgtgg ctaaagctac tgactttgac catgcaattt caaaattttc      2100
     tgcagagaaa gttagacggg tgagattgta aactgcatgt gaaagtcacc agtcattaag      2160
     acagtcttta gctatttgtt ctgcttgatt aataatcgat taaactatgt tatttataaa      2220
     aactagtttt atttatttcc tttcatacag actgtttaca aactaattaa ctttctattt      2280
     tgctcatttc attatgtgta tcaaaaattt attcctctct ccttgaaatt tttttccatt      2340
     ctttctaagg ttggcgagag tggtggtggt gttggagggg ggggggtgac aagttggatc      2400
     accgcaccgg gtgccaaact acttagctac gccactg                               2437
//
ID   hAT-N33_RPr repbase;    DNA;    INV; 1868 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N33_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3375-3375 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1868 BP; 646 A; 264 C; 329 G; 629 T; 0 other;
     cagtggcgta cctagggggg ggcggtgggt gcggtccgca ccgggcggca cttaccttgg        60
     ggcggcattt tttatattta cttatagttg taaaaagcaa cttattcatt tcatatttat       120
     tttctttctt gaataataaa tgattattat gattattata agtttaatat ttgattcata       180
     taaattatga ttaactatat gatttcgaat attattcctc ggtgtatata aatgcatttt       240
     agtgtaaatt ttgaattcta attcaagaac aagataataa ttttatttta ttgtattcat       300
     taaaattcgt tgaattcgta aaaggatctt tacgattttg ttcggcaatt tttcctaact       360
     aaaatttttt gatatcagtt tataaatgtc atttcttttg aaaagtttat atgattactt       420
     tgaagtgata tatcaatatt tttttaaatc atcgatgatc gatttttctt ttgaaaagca       480
     gggccggcgg aaggcggtct gctaggtctg caaagcatta gggcgccggc ataagaacta       540
     tctttttcaa acaacaaaat ctaaacgaga caaaacaaaa atactgacga agttacaatt       600
     tcaggaatcg caaatagata aatatactca gtccgttttg aagaattgta tttggaatga       660
     taaattgctt ataaaccatt ttgttcattc gcgattcaat cttttaacag tgaagagtga       720
     aacaaattat tagggtgcca gtgcatttgg agagtttatt ataggtaagt atattatatt       780
     acgtattata gatatagatg ttattctaaa tgctattcag agtagtaaaa tgactttgcc       840
     gttttctata cataatatac tatttatttc gactttcgac aagttatatt tttattatat       900
     atccctagga tgaaacgagt aaaagaaagt ggtgcgtcat ttagaaagaa aaggaagaga       960
     agggaggaaa tacagactaa aaatactgga gcactactca aatatatctc ccataagtca      1020
     acttctagtt cttttagtat tgttgcctca aatacgggcg aagaagcagc cctcgaaggc      1080
     gaaaaaacat tttccaatgt tgttcaagag gaaagacctg cttcacatac tggcgaagaa      1140
     gtagaaagtt catcaagttc tgatgaagaa tctgctgcac aaattattcc gtctatttct      1200
     atgaaagata ttggattatg gcctaacaaa attgacgaca atacaagagt atttctggta      1260
     cgtcaaggtc cctttgcaat tcaaaatttg gacgccgact tcagcgaagg agtaaaacgt      1320
     cctaataata caatcaaagc caaaggtgaa acaagaaaac tgagtcagga ctggtttttt      1380
     caaattttgc ctaatggcga aaagctctta agatcgtgga tggtatattc aattctgttc      1440
     ccaacattgt aattttgtta agaatttttt taacaatttc aatcagtgtc gctagttgcg      1500
     aaagaagctt ctcaaaattg aagttgataa aaaattatct tcgttctaca atgagtcaat      1560
     taagactaca aaatcttgca atattgtcaa tagaacaaga aattacaaat aatataaatt      1620
     ttgagagcat tatacacgat ttttctagta tgaaagctag aagagtagat attatataaa      1680
     tatgtttacg agtgcataca aatatgtcta aaaaaattta ctctgtgtat taattaatat      1740
     tgattaaata acttaataat ttatttatgt gtattaattt ataaaaacca ctatttgatt      1800
     gacttataat agaaagggcg gcaaactgga gatcgccccg ggcggcaaaa gttctaggta      1860
     cgccactg                                                               1868
//
ID   hAT-N34_DTa repbase;    DNA;    INV; 576 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N34_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-576
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6170-6170 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 576 BP; 214 A; 68 C; 57 G; 237 T; 0 other;
     tagggatgtc gaaatattta aaaatatcgt atcgatgata ttttttattt aaacaaaaaa        60
     tcaaaatgat atttgatata tcagaaaaaa aatatctata tatcagatat ttttgatatt       120
     tttgttttat tatttttttt taattttaag ctgcataagc aataaccact aaacattaac       180
     ccacatacga tcttaaatta tatttttata atttttagtt tatatttatt aataaatgaa       240
     agaaaacaat atttattttt gctttctttt gcttttattt ataatattaa aatcaagtat       300
     ttcccgcgca ttttttttac gcgttttctt gaattctgaa tgctatgcta tgcattttca       360
     cttgccgaaa aataaatttt agcggcgctc atctttcaca tatgtatttt ttcttgtccc       420
     gatgaaaagt gagaccactt aaaattatca aaaaaaatgt gaaaaaaaat cgatgatata       480
     tgataattat tcaaaaaaaa tatcacgata aaaatattta ttttttcgta aaaaatatcg       540
     atatattgat attttgatat attttcgaca tcccta                                 576
//
ID   hAT-N34_LMi repbase;    DNA;    INV; 4661 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 20.01, Created)
DT   09-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4661
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 23-23 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 4661 BP; 1381 A; 892 C; 895 G; 1493 T; 0 other;
     catggccccc acaagggtgg ggctgggtgg acccatgggt ccagggcccg gtgctgaagg        60
     gggcccgagc ccagccctaa atgattcaat tttttgttac tgaaattaaa aacaaactag       120
     aaaaaaacat gttgaatatt tttcatccaa cgaaatttta gaagattcta caggcaattg       180
     tagtagatat ttatgataaa ccgcttatct taaacgatta cttcgattga tgctcttagt       240
     tattgccatt ggttggtatt gtatgtgtgt attaactaag gtgaccaacc gtaccgattt       300
     tttcgggaca gtcacgattt ttgtgtgtct gtcccgaatt ttttcaaagg taattcggta       360
     cacctatttg tcccggattt aacaattatg ttccgattta gaaatttatc tcacctgtat       420
     cggtctattt tattattagt tttaattatg atgggaaact gtttgacaaa aggttcgtta       480
     gacttaaggt acttatcaca aactgtcgaa accgtttcaa actgtttcca ctgagcatac       540
     gcgcacaaac tataccagtg agaaaatcag tgaatggact gctaacacca cttttccagg       600
     tcaaagatgg attgatatta tttctcattt cagacagaat catgtgccat tctcaaatgt       660
     gcttaagcta gtgcagtttc tcttctgcct ttccggaaat aatgctgtta ctgaaagggt       720
     attttcccca catgaataat atatggacaa gtgacaaaac acagcttgcc gtagaaactg       780
     tgaaatcaat attagtaact agagtaaatt attatgaaac ttgtgtagaa ttttttcaca       840
     tgttgttgaa aaatacagac ttgctgaaga aaattcactg cactgttaaa tacagttgtt       900
     ctgatcgcat tccttcatca tataaagtac taataaagtg taaattaatg tactttttgt       960
     aacaacttaa actgatattt tgtaattatt actttcacta aaatcttctt ctaatataat      1020
     gaaaatatat atacaaatta caaaatttgt aatgtgtccc gaatttggat ctagaaaatg      1080
     tggttatgtc ccgaatttga atctagaaaa tatggtcacc ttagtattaa cacagtatgc      1140
     aatgttttct ccttgtggag tacactcact gaacagagac ggtgcttatg ctgctgaact      1200
     gaattatgat gtgattcttt tttagaaatg ttgagagttt ttattctttc ttctctatta      1260
     gggctggtca ttgggaattg ttgaaacaac ttgtcccttt gtctaagtct tgttgcaatc      1320
     aaaggctaca aatactccgc caaattttga agcaacatcc ttcgatcttc aaagttttag      1380
     acgtgttcct gctgtattaa ctccatcagc aaaaaatatt gatttggatc tcaagaagta      1440
     cttgacagct ttcaaaggcc tcttgatatc attttggcgc aatatcttga cctctattga      1500
     tcacaaaaat gtcgttatac agaacaaagg aatttccctc aacgtagcga tgccggtgat      1560
     taacttaaag acattatgac atcactttga atgaagaaaa agtagttgct gaggcagttg      1620
     gcatttcatc agagattatc aataggaaac ctgatgcaaa tgaaaggaca gctgaacaac      1680
     ttcagctgta agcatcaaat taattcagat cttttttttt tgtctttcct gtttttaatt      1740
     ttgtaatgca agatttgaca acaatatttg cgagctatga acaatttttt catctatttt      1800
     caccagtttt tggctttcgt ggacctagaa agtaatgaac tgaaagttaa aatcaccaat      1860
     cccatctcaa agtatccttc agatttagca gatactgaca gcttctttga aattctaccc      1920
     atgtagaccg tcttcagtag gcctgcagtc tgtcaaccat aaaaggatcc aatgaaggtt      1980
     ctcagcacgt ttatgagaaa agcttcaagc aatttttttg gtactgagta gaacaattag      2040
     acatttttgt acgattcagg gccggattaa ggcaatcgca agtaccgtgg ccgccggggg      2100
     ccccgaacta gagggggccc cgccatgatc gccttcgaaa tttgtcacta tttaacgaag      2160
     agtcttgttt cctagtaaaa ggaaaaaaaa tcatcgaatt tagaatatta acatgatgca      2220
     ttcacactaa tcccgccatc gagagcacct ttattgttgt ctctactttt cctttaacgg      2280
     gacagtagtg ttgaatacca cggcagtctt acttcacgtg aaccagcgac aatacacatt      2340
     tcgatttgtc gcccagtcgg ccgccgattt gtgtcgaaac accagaaatg tttgatgtcg      2400
     ccgacaggcg cagttcgcct ttttgcgtac aacgcggcgc tttaggccca caacagtggg      2460
     tagtgtctgc agaggctgcc ctcagccggt gcaacatctg cagtaatctg cagttccctc      2520
     cgtttctacg aataatttgt aagtaaactt ttgttattag atgaaaaagt ctgcatattc      2580
     atatttgccg tgaaattatt atcaacttat agaaacacta catcagacat tacgataccg      2640
     gatattgcaa caatgaattt ctatttcgtc agccagaggg gactccagaa atatgcgaaa      2700
     aatattatac cagatgttag gaaggccttt cttaaaaatt tggaaaaata tttaccagtt      2760
     tactataaag ccataaataa gataaatata gaatagtttt agtgtcactg taatattaaa      2820
     aacacctaat acattgttac attcctattt ctccagtttt atgttgtgtt agttttaggt      2880
     acaagttcgt tgtttttaag ctcatattgg tatattttgt tgaatatttt ccttgtttta      2940
     gcttaaattt cccgcatttt gtgcatattt gaacacatac atttcacttg gcaaagccaa      3000
     ttggtgaact atccgggcgg tagtactgtc gtgattaaat gcagaagaaa gataaacgga      3060
     ggtgatacga aattaatcta ccaggtattc tgaaaagtac agcttaacac gttatacgcc      3120
     atttaaaaat cattttacac tggaaggatc gagaggccga attggcccct ttaccaattt      3180
     ttcccatgtg tcctgatcaa accgttaaat gaaatgagtt gacttctgtg attttttcat      3240
     cttttatata aagtattgtg caccctcttt tagagtgttc tacttcaaat agattcctaa      3300
     atattaagat tactacctag aaggaccgca gggccaattt ggcccctcat agcgtttctc      3360
     tgtattttcg gcatgtttcc ttgtaatact gtgtatgaaa taaaaccaac tgttgtctcc      3420
     ttgttgtttc aatatgcgac aacaatgcca tacattccag cactgattgc ggtagggcag      3480
     ctggggatgg cggtcatgta tggatgagtt atgcctgagt gattgattgt gtgagtgagt      3540
     gtgatctttt ctgacgaagg tcatggccga aaatttacaa gttgtatgaa tgtgaatatg      3600
     agtttgttgg cagctcagcg atcatcttta tggtgagttg ctagctatcc tcatattatc      3660
     aacattccaa tctggacctt ccattgttaa aaatcaataa aagtacatat gatggttaca      3720
     ctgaattatc tttcacaatc tggccgtata agcaataaaa ctgcatgggg ccaatttggc      3780
     cccagaggtt cttatacgta gtagcttgca tgcgatcctt ctagtattaa atgccaagta      3840
     gactagatag cagctataaa aacatgatat aattagttcc tttgcccatt ttactctggt      3900
     tgtcataccg cttagggatt cgttctcaag tcatgccgtt ggcgcagcag tttgacgtta      3960
     cttctggcgt ggcttgaaaa ggaattgatg gatcagcttt cggtgtaatg tagtgataga      4020
     ttttttttct tttcgccaac ttcctgcgaa gatgagattt tcatgtgtgt acagcaattc      4080
     cgccttacct ggcgcagcgt ctgccagaag tacgaacaag tgttctgtta agctaaacta      4140
     gggcttactg tggcccaggg ccgtagccag gggggggggg gatgaagggg atcaatcccc      4200
     cccccccccc aaaagcctca ctattcacct aattcctgat aaagtaattc aaaagtatgc      4260
     tgaagttgct ccttcgagat ttgtattgaa taaaatttaa tattgtctct attgaaatac      4320
     atctgcgcct ttagttcaac tatgttgtaa agcttcacaa gttagaatat acgtcataat      4380
     tggctgatcc cccccccccc cctccgaaac caaattctga ctacgggcct gctgtggcca      4440
     ttgtaagtaa agtctcaatt ttaagtaaaa taattttata aatgaagctt accgtatcaa      4500
     atttatacct tgttatacca agttaaagta cattctaaaa agagcatgat taagatataa      4560
     acttgcaatt acaaactact gcacacaaca gaaaaaaaga cagggggagg gcccgtctct      4620
     gattctgggt ccagggcccg caatcgaatg tgggggccat g                          4661
//
ID   hAT-N34_RPr repbase;    DNA;    INV; 707 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N34_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-707
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3376-3376 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TSD is 7-bp long.
XX
SQ   Sequence 707 BP; 233 A; 104 C; 111 G; 259 T; 0 other;
     taaggtgacc aatcgtcctc ctttagggag gacagtcctc cttttgtagg ttctgtcctc        60
     cctcgaaaaa tgtcctccta cctgtcctcc ttttcgatat ttgtcctcct ttttgatatg       120
     ttaatctctg tattcagaaa ttgtgttgag tttttatcga aagaaatgcc tgatattaaa       180
     atcgatgaca attgtctgtt tgaagaaatt agaagactga atatatattt aaattctgat       240
     aaattagaac aatgggaaaa tcaacatgtt gaaattgata aaagatgggt ggaaatattt       300
     aaccatttca aaaatgaaca cattccctat gaaaatttag taattcctgt tgaatttacg       360
     ttgtgctgcc ctggaacaaa tgcagcagtt gaaagagttt tttcaatggg taatgatttt       420
     tggctaagtg agaaatcaag attgaatgtt gatactctag ctgcagcact tactgtaaag       480
     ttcaatatga aggatatttc ttgctccgaa atttccaata tactgttaaa aaatgatata       540
     ttgacaaaaa atatccattc aatggaaaaa tactcgttta attaaataat tatagtaagc       600
     ataatttgta aattattgaa ttaataaaat gtttcactta tttacgttgt acttttttct       660
     taaatttttt tgtcctcctt ttcattgtaa aaaaattggt cacctta                     707
//
ID   hAT-N35_DTa repbase;    DNA;    INV; 1026 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N35_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1026
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6171-6171 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1026 BP; 361 A; 188 C; 157 G; 318 T; 2 other;
     tagaggcctg catgaatgta tttatttcca aacttacagt actgtacagc tgtacacggt        60
     actcamattt agtgtactca tacaatattg tagagagtac ccactctacc gatagtaact       120
     gagtacacta ttttagagtg aacacttttt taatactatg tgttatgctt ctcaatctga       180
     acaatactat gagtgtcgtc tcaattacta ttgtacagta ctgtactctg agtaaaaaaa       240
     aaagtgcaaa tttgtattgc aatagcccat cagaagacga agactccata actcawtcta       300
     atccacaaat cgatcctgtt tttgaagact acactcaacc aatccaaagc aatagccttc       360
     ataatacaat taatgatgaa atcgaaacat ataaacacgt taaaatctcg tacagtgacg       420
     actttaatgt cctgcaatgg tgatttatca ataagaaaac atttccatta ttatacaaac       480
     taggcctaca aatcttagcg gtcccagcaa gtagcgctcc gtcggagagg gcgttttcaa       540
     ttgcaaaaaa tccaatttcc gcaaagcgtt ccaaaattgc ttcgactggt caacaaaata       600
     atgtatttaa actccaacat agacagcatt aatgaaaatg tcttgaatag cgattaatgt       660
     attaataaat ccgtcaatat tttatgacta acgacacttt gtctctttca ttaggtttta       720
     agtgattctg ctagtggata gattacaata ttacaaagaa ataagcaagc tttaacattt       780
     tataaattca gtaggccttg taattttggg aaaacttcat tcactgtaca atgagttatt       840
     gtacaccaaa aacactgtat tcacaatata ctgtactgtg tctggaaaag tgagtacagt       900
     atttggcaat acagtcacaa gtactgcatt cactcatatt taaagtaatg aatacagaaa       960
     aacttataca agttttaaga atgagtgatt catttgtcag tttgaatgca ttcatgcaga      1020
     cctcta                                                                 1026
//
ID   hAT-N35_LMi repbase;    DNA;    INV; 853 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-853
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 96-96 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. 5'-end is not recovered. 3'-end
CC   31-bp is similar to that of hAT-N6_AFC.
XX
SQ   Sequence 853 BP; 266 A; 167 C; 133 G; 286 T; 1 other;
     gagtgtgagt cccatcaaaa atgtattaga aatgtaagat ttccgttttt ctaccttccc        60
     ctcaatcctt aacgaataaa tggcaataat tgacgtaagt ttgtttacaa tgtattggca       120
     gcagggcact ttcttsctcg taatagcata aaatattaat tataacgatt agagcatatt       180
     tattctttta tttagaaaat ttattaatcc tgtcatacaa tattatgaac cttttcactg       240
     accagcatta gttacaaaac taagttttat ttttttatta tttttggagg atttcttcat       300
     aattctaaaa gtcggcactc tacgaacgaa atatgtatcc tctctgggaa tatcatgacc       360
     tgctacagtt aataaccaaa taccaaagag gtatattggt ctttgccaaa tactcataac       420
     gatactgcca gtgaaaatta actgccactg atatttctac tactctcaat actcaatact       480
     ccctaaagcg tctaccgtta tcatagtacc tcgaattcgc attggtcact ccatgttatt       540
     agatacaaga ttcccacgag aacgtagtac acactttcac caacagatgg ataatcgtta       600
     aacagttatt acccatgatt cttacgcggt taattccatg gagtatagaa ctgaccagta       660
     tttggacagg acatctggtc gatactgtgg tcgaatcgtt tcattagtac caacttttgt       720
     gaacagatgg cactacgcag tacgcatagt tattacgata actgccagta tttgatgagc       780
     ggttattaca atcacggtta ttcataaata accggatatt tctatcagtt atcgttattt       840
     tggcccagct cta                                                          853
//
ID   hAT-N35_RPr repbase;    DNA;    INV; 925 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N35_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-925
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3377-3377 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. TSD is 8-bp long.
XX
SQ   Sequence 925 BP; 278 A; 144 C; 158 G; 345 T; 0 other;
     tagggttgcc aactgccctt ttttttggaa aggacagtcc ttttttaaca cctggttgtc        60
     cttgtccttt cttaaattag gaaaggacgc cttttgtcct tttttcagat attattcaca       120
     caaatctaat ttattttatt gtatttttga tttaagttct gacttccgag acttcttcat       180
     ttggcgtgtt gtttttctgt tctaactgaa ctgaataggt caacaggtta ttgatgtaac       240
     gatgaacaaa atgcaaaaaa tggtactgga tttgatgatt ctgatcaatt atattcttat       300
     ggtaggtgaa ttcctttcat aatgccgacg ctgttttgag gcctactttt ttgcaattaa       360
     tcacagattt ctgcatcaat ttttaaaata accactattc atggtatacc tttcgaaagg       420
     tgattgtatg tagatgtttt tcatgaatag tgcacgtttt aaacttatat aatatttttg       480
     agaaaaatga agtcgaaagt ttttggaaaa aattagaaac ttgctatttc ttatgtttgg       540
     gccacaaagt gaaatacttg atattattat tttggaatat aaattagctt atttaaaagg       600
     aaatttaacc ttctttctaa tgagcttatt gaaattgctg tagctttaat agtttgagaa       660
     atatagacaa ctgtttgcta aaaagtagta ataccttgaa aaaacataaa attaaaaata       720
     tctataaaac ggagccgaat cgagccatag tttatataga attttttgtt gcaaatgatg       780
     cccagaatcg cctcccgaag taacggtagt cttatgctga acaccctgta tattcccggg       840
     ccccaaaatc ctgtcgacgg ccctgaatgt acctaatttt tttagggtgt cctttttttg       900
     gaactttata gagttggcaa cccta                                             925
//
ID   hAT-N36_DTa repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N36_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-200
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6172-6172 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 200 BP; 75 A; 23 C; 25 G; 77 T; 0 other;
     tagacatcgg attttaggtg aaatcgtttt ttttaaatac gatttaaagc cacatttgat        60
     tagttacaaa ttttatttat taagttataa ttagatttag gccaaactta attgaggttt       120
     ttgtaaaaaa attttaacca atcaaatgtg gctttaaatc atatttaaaa aaaacgattt       180
     cacctaaaat ccgatgtcta                                                   200
//
ID   hAT-N36_LMi repbase;    DNA;    INV; 2417 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2417
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 97-97 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long. Terminal 14-bp
CC   sequences are similar to those of HATN11_DR.
XX
SQ   Sequence 2417 BP; 602 A; 546 C; 505 G; 764 T; 0 other;
     tagaggtctg cacctcgctc ggttgctcgc tcgaatcgcg tggtacatgt cgttctatga        60
     cagtccgaca ggtgtcggtg ctgcagcttg cggcaaggcg tgtggctgcg ctcgacttcc       120
     tccacgctcg ttcgagcggg gcacgctcga ccggcccgac cgtccacact gcccgctcgc       180
     cactcggtcg cccaccgcag cgccactcga gtccaaggcg agtgtcggga gcaaactaga       240
     cgctagagaa taaatcctga ctgcgaaatt tggaattgtt tcctttcccg ggtgcttcga       300
     aagctgttct ctcgatccag ttgaactagc tattcagttt cgcattttgt actttaccat       360
     acaagttatt atacgtgatt aacataaagt ttctgtgcta agatcattta ctaaatgagt       420
     tttccatgat ctttcttact ttcttgttcc cattttgtgg actgttagtt cctgtttagt       480
     ggtaggtgtt acttgccgtc ttaacgagca aatgattgta ttttatatcc attcctctta       540
     tcactctcaa gtcctggaat actttgtccg tcttttatat tgatattaaa tactacgata       600
     ttgatgtaca cccgttaggt taggtttgtg catctctctc tctgttgcac cccgttaata       660
     catattcccg tagcattttg gcactgtgcg tggttgctgc gcctctacct tttccgagtg       720
     agtccttaac gggaattttt ccaattgcaa cattcatata ttccccactg ccactgtcgt       780
     ctttcttatc tacataataa agaacgcatg caagcttttg tgcaatatat aggatccgcg       840
     ctttcttccg tcgtcagggt catatgccgg tctaatcctc atatatcctg tacctgtttt       900
     aaatcctctt attccaactg tttactttac acagctgtac gaatttatgg tgctcctgct       960
     gtttcagtga tatctgtgtt atatttattt agggccgtct gaagaatgtc acccgggtgc      1020
     accagccaaa agaatgaagt gcatgttttc ggaatggctg gactgtgaaa tgcgcgaggc      1080
     gcaatccacc aatgaggtgg acctttattt agcacgaatt gatggtgatg acgacgatct      1140
     gcttgaatgg tagaaacgca acagtactct ctttcctaag ctagctgtat tggcaaacag      1200
     tattttgtgt gcccgcctca aatgcaccta gtgaacgcac tttcagtgcg gcagggaacc      1260
     tgttctctga tagaagaact cgactcgatc tacaacgtgt caatgatatt ttaacaatac      1320
     attgcaatta caatgccact aacgaatagt ttggggataa tgttactttt cgatgtatac      1380
     tttgttgtac ggtaactttc acttttgtac attgcaataa aaacgttgtt cgttccgtag      1440
     tttctcttta gatcctttac attactttca aatgttgtag ttagtgaaaa caaccttttt      1500
     gtctcgtttg cggtataatg atattgcggt tacatgctac tatgcaggaa tacacgtcta      1560
     cagcataact gattttagtt cctttagtta gcgggggtgc gtcagacgca acagcagccc      1620
     acacctcaga gccacagagc cgctgccgta gcgactgaca aggaaaccta tccaagtgtc      1680
     actctccgat ttttatgaaa tttggatttg ttataataca tgaaaaactg tgggacccgt      1740
     atttttattt ttatttattt attttaagcg gtggaaaaac atatttaagg ggtgaaacgg      1800
     tccctccaaa attggggcta aaatagaaaa atcgtgataa cttagagatt aatgaagcga      1860
     ttttaatgat tttttggtat gaaagtatct tttgataaga gatcggccta ggtacattgc      1920
     agggggagtg acaattaggg gggcaactac ccctaaagtg accaattttt tgtgctcaaa      1980
     aaattgtttt gatttaatcg aagttgaatc tatgaaattt gtcttttatc aaaagatact      2040
     ttcataccaa aaatcattaa aatcgcttca ctaatctcta agttatcgcc atttttctat      2100
     tttagcccca attttggagg gaccgtttca ccccttaaat atgtttttcc gccgctaaaa      2160
     aaattacgtg tcccatagtt tttcatgtat tataaaatat gcaaatttca taaaaatcgg      2220
     agagtgacac ttgggtaggt ttccttgtga gtacagcggc agcactacgc tgtgcggcct      2280
     ctgcccgccc cgccccacgc agcctcgttc gagtgtcaac acgctcgctg cgagcgtaca      2340
     cactcgccgc gccaccgccg agcgttgcgc actcgaccga gtacgagcga gcgaaaccgg      2400
     cgatttgcag acctcta                                                     2417
//
ID   hAT-N36_RPr repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N36_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-468
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3378-3378 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TSD is 8-bp long.
XX
SQ   Sequence 468 BP; 148 A; 67 C; 64 G; 189 T; 0 other;
     tacggtgacc attcgtactg tttttggcag gacagtactg ttttttaaga cgctgtcctt        60
     cttttttttt tttaagcata aatgtcctgt tttttattta tttgtactgt ttttcaatga       120
     aatttaaatt atactcaaat ttaatttttg aatgtaaaaa tatagtataa atgtataata       180
     attaagttcg caaataatcg tttagaaaaa aattttctgt gtacattaac tttggacgaa       240
     cctttagcgt aaaacacaac ctgttttacc gatagagtag actagtcgac tagtgtaaac       300
     atcgatcgct aaacgtcatg taaaaactaa taactaaact aacctatact attatatggc       360
     cattgttttg taataaccga tctcgtgtta ataaacgtat taatattttt tatagttttt       420
     tttttgctcc ttgtcctgtt ttttgataca aaaataatgg tcaccgta                    468
//
ID   hAT-N37_LMi repbase;    DNA;    INV; 1428 BP.
XX
AC   .
XX
DT   25-JUL-2014 (Rel. 20.01, Created)
DT   25-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1428
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 24-24 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus. TSDs are 8-bp long. Terminal 14-bp
CC   sequences are similar to those of HATN11_DR.
XX
SQ   Sequence 1428 BP; 385 A; 309 C; 360 G; 374 T; 0 other;
     cagtggcggc gcgtcctatg tgttcactgg ttcagtgaac ccccggaaaa aagctcgtcg        60
     tgaaaaaaag taaataaata aaaagtgttt ttaaactatc attcttcgtt tcgttcttct       120
     atcagatcat tttatatgca cattcaaagt atttttatcg catgagaaac gttttacgtc       180
     gcggagacag cacgtatacg agtcgtagcg cggccgctta atataggcgg cagtggccgc       240
     agcgttgcaa tgcgcatgcg cggctgaggt tcaaattctc ttctgaaccc cctggaggca       300
     gcatatgggc gctcccgcgg cagggagggg cgaggggaaa cgccgctttt aacattggcg       360
     ttggagctgg tagagacgcc agctcctggc tactcgagct ctggcggtta cgcacgaatg       420
     gtcccgaagc aagacaatgg agctactgcg cacctcgcct tgcgcatgcg caaatcctcc       480
     atgaaggcaa catccgccct tcatatttgt ttttggcgca ttgaagattc atcaaaaaca       540
     cgtcatattt ggtaaaatat cttataacta taaattaaag acgcatcaac tgtaaaagcc       600
     ttcagaagat ccgatcatga ataataatga agtcactact ctccacctag caagaatagc       660
     cgtgtggtta gcggcatcgc gctgcgctgt cgaaggtagt gggttcgaga ccgactgcaa       720
     gcaatttttt ttaaacccaa tcttcttttt aacagatacg ggaacaacaa tgacttttgt       780
     attgttactt gccacatata ctttggacgt tttagcaaat gtgtcgcgat tttgagggta       840
     aatgacattt atactcttcg ttgtaacaaa tatttaactg tttgaaaaga tgtgggggag       900
     agcagccttt gcgcatgcgt aaggttagga gggggtgctg cttacagtgt cacgtgaccc       960
     gaaggtagct tgtctcttca tcgtaacaga ttcattttgt tacagtcact taacagtgta      1020
     atcagttact tactgtgttt tagtgttcat gtgcatattc atatgttctt ggtgtttatt      1080
     atcaaagaaa aatgaacaac gttcagtatc ttttagaaac aaattactca gctttaagct      1140
     tggaagaaaa gtgtgaaata aagaagcttg gtaggccgac gcctcagctc gagttgaagc      1200
     aagcgcaaac aagccgaggt aagacattct gcagatcttt taacgaaaat atatctaaag      1260
     gggggggggg gcaaaccggg gcgctttccc ccggcgccac tcgcagaggt gcgccaaatt      1320
     gtctctttgg acgccgagcg gggggggggg gggggggggg gcgccactat caagatccgg      1380
     cactgaaaga agtgaacccc cagtcatctg aagcaccagc cgccactg                   1428
//
ID   hAT-N37_RPr repbase;    DNA;    INV; 1527 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N37_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1527
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3379-3379 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 1527 BP; 519 A; 244 C; 299 G; 465 T; 0 other;
     tagggtgttt catttttccg aagttgtgag tatcacacaa ctttgcttgc cccctgagtc        60
     taagtattac aaaagatata tatgccaaat ttcaagaaga ttggacaatg attagaggtt       120
     gcacacatta gtcactatta tctcaaacta gctaatgaag tgttttgtgt taatgtaagt       180
     tttctttcta taatttcatt tacgtttctt tgttcattac tggttaataa ttaaacttga       240
     aaatgggaac taaaagtggt atttggctgt tagaaaaatt gcccagtgat gagtttttag       300
     gagcaaggct tccttcagaa gagcaagtac ttttagtgtt tattttagtg ttatcaatgt       360
     tggatgaaga cactcctgtt caaggatttc tagaggaaca acgcgtgaca atggttaact       420
     acatccaaaa tgttctaaaa gaaggaagcc atccaagaga agactacaaa gagttattaa       480
     atctcccact cctttattta ggaggttggg atgaaaacaa tttcactttc aggatcccag       540
     gagctttgca tcaagcaagg tggatggcaa aggcattata tgcacttaaa atagcccttt       600
     ttgctaaaca attgaatatg tctcaacgag aattgaaagg aatgaaacgc gtagccgatt       660
     ttgtcagtct catatattcg attttggcac gaggcaactg taagtcgatg ggctccaaag       720
     aatgatctgg atttgataca gcttctggac tcttacccgg gatacagacg tcaaaaacag       780
     tgcagtcaca gttgccaaaa ggcacctttg gtatctgtcg gaaacaaacg tgtgattggc       840
     ctttttggat gaacgtatta ctgaagaagt taaacaaagt atggttcaaa atttggaaac       900
     caaacctgcg aagaagaagg aattgaaaag attagagggt aaaaatctag actttgaagg       960
     aaaagacaag ccatttcgtt acccaaaaaa ccaagacgtt ctttgagtta tttgggatct      1020
     acgacgtgac agaatactgc agcgattctc taagaagcca cgtaaatgct cttaaagtgg      1080
     taaatgatgc tgtagaaaga ggaatagttt tgataaaaaa gtttaacgaa tcggttagag      1140
     acgaacaaca aaaacaattc ttgttgaggg tagtcgagta tcacagagaa gtcgtcacta      1200
     accgaacaaa agaagagatt gcatcatata aaattgatta atatacaagt accttacatg      1260
     ttcataatgc ctgctaaacc ttgtatttag agttattata attttaagtt tgtgatttat      1320
     agtttttcca ataaatgtca taaatattga gaatttcgta tttttcctaa atctataaaa      1380
     gtggtcaaag tgtgcaacct ctaaatatga tcaaatcttc tcgaaatttg gtatgcataa      1440
     cttttgaatt actgagactc ggaaggcgag caaagtctgc caaaatttta tattaatttt      1500
     tttcccccta caaaatgaaa cacccta                                          1527
//
ID   hAT-N38_LMi repbase;    DNA;    INV; 1172 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1172
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3068-3068 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1172 BP; 345 A; 258 C; 254 G; 315 T; 0 other;
     caggcctgcc caggaggcgg ctagacgagc acgagcgctc gctgcctggg ccgtgagcgc        60
     tcgcggctga atggggcgcc caggcgtcgt gacgtactgc agcagcaggg gagaggtgta       120
     aacaggcgct gtcttcagac gactaagcac aacgtcgttc cggcttagct ttagatgcga       180
     gcgcgtatgc ccaccacgca gtacataacg tacagagcac ctcttttcac gtcgaagaaa       240
     tttagtacga tggcttcaaa gcgaaaagca gacacatcaa cgtcaatgta caacacgtca       300
     gtgcaagaag cgtatatgtt tcttatatgc gagtgtctga aaatgcttag catgcttcaa       360
     aatccttaac aaaaaaatta atttacaacg gtattacaat accctccatg cgaaagacta       420
     tgggcacttg caagatgaag agcggaaagc ggaggttcaa agattaaaga acataccact       480
     aacaaggaga gggtttgaca tttgggtcac cgatttcgat cgaattttgc ataggcgtac       540
     catattgcat ataaaaggac acgtgtttcg gctttttgct agacagtagt ttttgaaaaa       600
     tcaaggtcaa atttgatgat ggaaaatcgc gttttgaatt gtatacatcg aaagatcgtc       660
     taaacatgag cattttttta ctaatatata tggggccaaa agttaatgac gttcgggcaa       720
     ttaacgtttt tttctgtttt catgctgcag ctattaacat tcaattgagt gtattatctg       780
     tttacaactg tttcatttgt gatacacaat aaaaaaacga taaaaataag aaacatatag       840
     aattttactt tcatccatca gaaatctctt tcattcataa gaaataaatt gtatttcctc       900
     tttcatacat cagtttcata caatcaattt gccacagaat agattattca accagcgaca       960
     agcgttacat cttcgtataa catatcagtg gccgtagaat tggactgacc gacaattctc      1020
     cgttgcgaag ttactttatt gggattcttg cctccctcac tgcccctcac aactcttttc      1080
     cgttaccgtt agccaccgcg agccggccga cagctcactg ctgtggcgcg agcgcgagcc      1140
     agctcgctcg agcagattgc tgagcaggcc tg                                    1172
//
ID   hAT-N38_RPr repbase;    DNA;    INV; 1886 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N38_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1886
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3380-3380 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 1886 BP; 679 A; 253 C; 261 G; 693 T; 0 other;
     tagggtgggt caaaaaaatc ggctattttt ttttttacaa gtgcaacgga aaaatgggtt        60
     cctagacacc ttaaaaaaat tcccaccaaa tatgagctct taattttgaa aggaagatcc       120
     tccgcatcgc agttttttat ttttttttca gtccaataga aaaaaattca tacctttcca       180
     ttaattgact gtacaaaaaa atgtttcgaa taaattttgt aggaaattta atgttctaca       240
     aaaaaggtat cttatatttt tttcgtaaac ctcgccattt gaaagatata aaggatttaa       300
     ttttgattat tttatgacaa attccatttt tgtttatgaa ttttatacct cgacaataaa       360
     tgacttttac gaaatgcgaa atactaatat ttgttggaaa ttaactgctc tataaaatcg       420
     gtgtcttatg ttttggcgat aaagttaacc gttcaaaaga tattcatcat caaactttca       480
     tgtgtacgga ttttaaaagt ttttgattag atattcgaaa aatttcaatt taatttataa       540
     atttcatttc ttgtcattaa tataagtatt atttgagttt tattttcaaa attatcaaaa       600
     tttttcttca tttattctaa acattttagt tttaatcatt agaaatcacg agatcctagg       660
     gaaaatttct tctctagaga atttttgttt cgtattttat ttcatctgtt tgaattgtga       720
     actttgaact agcaccacct actttttact tcatcgttat gttgtcgttg gtttgtatac       780
     atttatttct acagcatttt tagtgtttcc aaaatttatg gtcttgtata tgtgatcgat       840
     cgattaatta tttacaaata ttgtggttac tacgtgaatt aacttgatat ttatcgaaaa       900
     tatggataaa gaaattcatt tgatcggaaa acttgtgcaa aaactttcag aacgtaagtt       960
     accaacagtg aaagaggtta tgagtgtttt ttttcatcag ctcaaagttt tgaaatgttc      1020
     tgtcaaacaa agtgccaaaa atgcagctga tcaagttatt gaattatgga aaaacaacca      1080
     gattccgact agtgaatcga ctagtgtaat aaaaaaaatt cttcgctatc ataatcgatg      1140
     gttgaaattg caaaaatctt ttgcgcgaaa aaaatcatca ggacgatgca aaaatgaaat      1200
     aaaatttcag aacgaactta aagcattatt tgatattgtc gataataaat cgagacaaat      1260
     atacttaaac ataaataaaa acttaaaaaa tattttgacg tttctcaatc gataacaact      1320
     aaaattcgtg taaattttct taaaaatcat aaattaaatt gaaatttttc gaatatctaa      1380
     tcaaaaactt ttaaaatccg tacacatgaa agtttgatga tgaatatctt ttgaacggtt      1440
     aattttatcg ccaaaacata agaaaccatt tttatagagc agttaatttc caacaaaaat      1500
     tggtattttg catttcgtaa aagtcattta ttgtcgagtt ataaaattca taaacaaaaa      1560
     tggaatttgt cataaaataa tcaaaattaa atcctttata tctttcaaat ggcgaggttt      1620
     acgaaaaaaa tataaggtac cttttttgta gagcattaaa tttcctacaa aattcattcg      1680
     aaacattttt ttgtacagtc aattaatgga gaggtatgaa tttttttcta ttggactaaa      1740
     aaaaaaatga aaaactgcga tgcggaggat cttcccttca aaattaagag ctcatatttg      1800
     gtgggaattt ttttaaggtg tctaggaacc catttttccg ttgcacttgt aaaaaaaaaa      1860
     atagtcgatt tttttgaccc acccta                                           1886
//
ID   hAT-N39B_RPr repbase;    DNA;    INV; 513 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N39B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-513
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3381-3381 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 8-bp long. containing
CC   MSAT-1_RPr sequences, which is replaced by (NNN)n here.
XX
SQ   Sequence 513 BP; 169 A; 66 C; 81 G; 182 T; 15 other;
     cagtggttct taaccggtgt tccgcgaata tggtccaagt gttccgcgaa atttcaattt        60
     taaatgtatt gaaatttaga aacttaggaa agatacgaaa acaaaaaatt gttccttttt       120
     tttttaattt gaatttaatt ttaagttctt gctaaatacc gaatttcaaa ttatttaatg       180
     ttagtgttcc gcgagaaaaa tatatacata taattgtgtt ccgcgtctat gaaaaggtta       240
     agaaccactg atatnnnnnn nnnnnnnnng gttcttaacc ggtgttccgc gaatatggtc       300
     caagtgttcc gcgaaatttc aattttaaat gtattgaaat ttagaaactt aggaaagata       360
     cgaaaacaaa aaattgttct ttttttttaa tttgaattta attttaagtt cttgctaaat       420
     accgaatttc aaattattta atgttagtgt tccgcgagaa aaatatatac atataattgt       480
     gttccgcgtc tatgaaaagg ttaagaacca ctg                                    513
//
ID   hAT-N39C_RPr repbase;    DNA;    INV; 351 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N39C_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-351
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3382-3382 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 8-bp long. containing.
XX
SQ   Sequence 351 BP; 109 A; 42 C; 45 G; 155 T; 0 other;
     cagtggttct taaccggtgt tccgcgaata tggtccaagt gttccgcgaa atttcaattt        60
     taaatgtatt gaagattaga aaattttctt atttgtagca acgtactttt atgttcatta       120
     tttgattaat ttaattttca gaatttattt tttaaaacta tgtaataatt tatccttttt       180
     aattttaatt aatacatata tcttttttga aaattatatt cgatttttta ttattcatta       240
     attttaagtt cttgctaaat accgaatttc aaatttttta atgttagtgt tccgcgagaa       300
     aaatatatac ataattgtgt tccgcgtctt tgaaaaggtt aagaaccact g                351
//
ID   hAT-N39_DTa repbase;    DNA;    INV; 1170 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   16-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N39_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1170
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6173-6173 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1170 BP; 415 A; 159 C; 204 G; 392 T; 0 other;
     cagggaccgt aatcattata agttaaataa taaaaattac tttgtaatga ttaaaattca        60
     atttttatat tttacttaga gcataataat tatttttgat caaaaaaaat aggactcaaa       120
     aataattttt attgatgatt tttatttttt ttgctcaaaa taaaactcaa aacagcctcg       180
     cgggcctcct gtaagacttt tctccaatct gatttcacag ccgtttaaga ggctattaaa       240
     actacctcca cgattttttg caaatttttt taaccacttt taaaaaaatg gcttatccca       300
     tgatttgtat tttattccaa aacccattag cctgacctgc gacataatgg aatattggga       360
     ggagaaacgc tttgtattcc cctttttgta tcaactggcc aaggtcgtac attcagttcc       420
     cgctacgcaa gtgagcgtgg aaagatcttt ttcggccctc aaaatggtac tgaccgatca       480
     aaggtgtaac cttgctaatg aggctttatc aaaattatta ttcgtaaaat taaataataa       540
     ataaatatgt ttgtaaaaaa atagtggagg aggtccgcga ggctgttatg agttttattt       600
     tgattggaat aaaatacaaa tcatgggata agccattttt ttaaaagtgg ttaaaaaaat       660
     ttgcaaaaaa tcgtgggggt agttttaata accttttgaa cggctgtgaa atcagatcgg       720
     cgaaaagtct tacaggagga ccgcgaggct gttatgagtt ttattttgat cggaataaaa       780
     taaaaatcat aggataagtt atttttacaa agtggttaaa aaaatttgca aaaaatcgtg       840
     gaggttgctt tgataagcct ttagacggct gtgaaatcag attggcgaaa agtcttacag       900
     gaagcacgcg aggctgtttt gagttttatt ttgagcaaaa aaaataaaaa tcatcaataa       960
     aaattatttt tgagtcctat tttttttgat caaaaataaa gattaccatt gaacaaaaag      1020
     ataaaaatca aaaatttaaa aatcatggcg ggaatgcata gattggacaa agataattat      1080
     ttgggtgaaa atcatttttt tttaggccta ttataagtgg ccgatttttt tgtttgaaaa      1140
     aataaaaata ataattattt tcggtccctg                                       1170
//
ID   hAT-N3_AAe  repbase;    DNA;    INV; 783 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.01, Created)
DT   24-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-783
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-783
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 141-141 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 783 BP; 260 A; 132 C; 150 G; 241 T; 0 other;
     tagagatggg cgaaccgttc gcgaacggtt caaaagaact agttctttgc ggtgaacgaa        60
     tgatacgtag ttcttttttt gagaacggta gttcagcaag aacggtttac tgaactcgaa       120
     ctgcgaatga acgaacgcaa cgaactggag gagagaacta ttcggcatgc attcttcgat       180
     cgttctcacc gaacgaaaga aacaaaacga agcaaatgaa gaacgctaca ctccgctttt       240
     ggtatgtcct gtcctttcta cgtccacaag acgctggtta tgattatgtg cgacgaatga       300
     gcaacgaatg aaatgtgttt gtgtgaatga tgagtcctcg tcgcttcgct ttaatcattt       360
     caatcattca atatgtgttt ggattagctg gataaggcta aatacggact gacaaggctt       420
     ggcgcgcaaa gaaaagcgca aggaataagc ttatctattt ttattttata atttatttta       480
     caataaatct tttattctag tttccaaata aatgcattct gttcaatttt ctcttgtcaa       540
     agttttctaa ttgtaaacag aaacataatt taattaatca taattattat taattaatca       600
     taatttagca gaaaattccc gcgctgacta aaaaaatttt catgagtcgt aatacattat       660
     tttgaaagcg aaaaaaaaag atttttttta agaacgaaag aacggttcaa aagaactagt       720
     tctctttcga gaacggaacg aatgggaact gttcattgaa aagaactgtt ttgcccatct       780
     cta                                                                     783
//
ID   hAT-N3_AP   repbase;    DNA;    INV; 799 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N3_AP.
XX
NM   hAT-N3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-799
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2102-2102 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 799 BP; 269 A; 124 C; 159 G; 247 T; 0 other;
     cagtgttggg aaggaacgcg ttccttttat aggaacgagg ctcggaacgc gttctattta        60
     aaatatagga acgaggaacg ggaaagagtt cctattttta aggaacttga acgaaaattt       120
     ccgttcctca aataatgaaa aaaaaaaaaa aatgaaagtt gtttttaata ataatatttt       180
     ctagaatata tttagtgttg gtattttggt attacttcat caatcattag taaatagtaa       240
     aacgaacaac ctaggtatcg ttggtatatt ttaatttagt tcgagattag catacaaggt       300
     ataatcatag atattataag aatggatagg acatcgagct tatcaactga gaataaaggt       360
     atacaatttt tgaggttata agagcgccaa agattagtaa cctaacctca aaaagcactc       420
     ttatagtcta tctctctcgt agatattgaa ctttctctct tcttatatct gatatcatac       480
     gttttatcga ctatcgtctt gatatgagac gtgagtcgtt ttaatttaaa cgatatcgaa       540
     tgcgcggccc tgacgagaat cggtcggcgg actgattgtt ctctcgtggg acagagtata       600
     aaacaaatca tttttgttca aatcggtgct ccttaggaag gagttagtta accgataatt       660
     tctgacttaa aaattgttcg caaaaagaca ccattgacga cgtaaaaaat gtgtaaagga       720
     acgggaacgc gttctttttt cgcgacagga acgaggaacg ggaacgagtt cctttttaaa       780
     aggaactttc ccaacactg                                                    799
//
ID   hAT-N3_BTa  repbase;    DNA;    INV; 2830 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2830
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 650-650 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 2830 BP; 861 A; 555 C; 545 G; 869 T; 0 other;
     tagggtggga cttatttttt taaatcgaca aaaccaaatg ttgcacggtc ttaaatggtt        60
     ctatgtgata aaaaaacacg gtagccaaga ggattttgag aaaaaaaaat tttaacccgg       120
     cgcgcacaga gcctaaacat cgagattttt ccggtttttt tggcattttc gccgtatatt       180
     tttgatattt ttgccagcaa cacggattcg acgctagatg tccaaaaatt ggtacaaacc       240
     tagcacatac cttgcagatt aagggaaaat ttttgttttt ctcctaggtc actctcagtt       300
     cgcttggtaa tgccgaaact ctccgctcgg cagctctaaa aatcgaaatt tcgccgtttt       360
     ttaacgtata atgaactttt tgagcaacct ataatggtag taaaaatccg aaaatttgtg       420
     gaaagcaagt ccataccatc agtatggaag ggcaaatgtc agaaaactcc tacgtctttt       480
     actttctgcc aagctatgcc cataatggtg gaaaacttgt caaaaatagc tcaattttga       540
     ccgttttttc gcgttcgaaa atttattgga caccctgtaa tgacaatgaa ggtccgaaaa       600
     tttgtggaaa gtaagttcat accatctgta tgaaataaaa aattttactt ggttcatacg       660
     tcttatattc ttcgtcctgc gatacccgaa atggcagcga aaacgtcaaa aatacctcaa       720
     attggccgtt ttttgataat tttttggaac accttgtagt ggcagtggag gtccgagaat       780
     ttgtgcaaag taagttcata ccctccgcaa gggataaaaa aatctacttg gttcctatgt       840
     cttacattcc tcgttgtgcg gtgcccgcaa tcacttcgaa aacgtcaaaa atacctcaat       900
     tcggccgttt cttcaatggc gaaatttatt agacaccctg taatgacact ggaagttcga       960
     aaattgggga aaagcaagtc cataccacca gtataaaagg gcaaatttca aaaggtccat      1020
     agatgtttga ttcttggtcg cacggtgtct tcagatacac aaaaatcgtg aaaaatacct      1080
     ccattttgac cggtctttcg ctattaaaat ttaatagaca ccctgtaacg gcaacagagg      1140
     tcgaaaaatt tgctgaaagt aagatcattc catcttcatg caatgaaaaa ttctacatcg      1200
     ttcctatgtt atgcattcct cgttgtgcgg tgcccgcaat cgcatcggaa acgtcaaata      1260
     tatctgaatt cggccaattt ttcgcgtgtg aaattttttt ggcaccctgt tatgacatca      1320
     gcgactctta aaagtgccaa gtaaatatac gttgtttata catctgaaag gaacggcaat      1380
     ttttcaaaga cccttacatt tataattgtt gtcgctagac gccctgaagt gaggcgaaat      1440
     tttctaaaat acctaaattt atccattcct ttctttcaac actagcttct tacatagttt      1500
     cggacctccg ctgtcagtac agggtgtctg caaaaataat tcggtaaaaa aaattgaccg      1560
     cattcaggta tatttgacgt ttccgatgcg attgcgggca ccgcacaacg aggaatgcat      1620
     aacataggaa cgatgtagaa tttttcattg catgaagatg gaatgatctt actttcagca      1680
     aatttttcga cctctgttgc cgttacaggg tgtctattaa attttaatag cgaaagaccg      1740
     gtcaaaatgg aggtattttt cacgattttt gtgtatctga agacaccgtg cgaccaagaa      1800
     tcaaacatct atggaccttt tgaaatttgc ccttttatac tggtggtatg gacttgcttt      1860
     tccccaattt tcgaacttcc agtgtcatta cagggtgtct aataaatttc gccattgaag      1920
     aaacggccga attgaggtat ttttgacgtt ttcgaagtga ttgcgggcac cgcacaacga      1980
     ggaatgtaag acataggaac caagtagatt tttttatccc ttgcggaggg tatgaactta      2040
     ctttgcacaa attctcggac ctccactgcc actacaaggt gttccaaaaa attatcaaaa      2100
     aacggccaat ttgaggtatt tttgacgttt tcgctgccat ttcgggtatc gcaggacgaa      2160
     gaatataaga cgtatgaacc aagtaaaatt ttttatttca tacagatggt atgaacttac      2220
     tttccacaaa ttttcggacc ttcattgtca ttacagggtg tccaataaat tttcgaacgc      2280
     gaaaaaacgg tcaaaattga gctatttttg acaagttttc caccattatg ggcatagctt      2340
     ggcagaaagt aaaagacgta ggagttttct gacatttgcc cttccatact gatggtatgg      2400
     acttgctttc cacaaatttt cggattttta ctaccattat aggttgctca aaaagttcat      2460
     tatacgttaa aaaacggcga aatttcgatt tttagagctg ccgagcggag agtttcggca      2520
     ttaccaagcg aactgagagt gacctaggag aaaaacaaaa attttccctt aatctgcaag      2580
     gtatgtgcta ggtttgtacc aatttttgga catctagcgt cgaatccgtg ttgctggcaa      2640
     aaatatcaaa aatatacggc gaaaatgcca aaaaaaccgg aaaaatctcg atgtttaggc      2700
     tctgtgcgcg ccgggttaaa aatttttttt ctcaaaatcc tcttggctac cgtgtttttt      2760
     tatcacatag aaccatttaa gaccgtgcaa catttggttt tgtcgattta aaaaaataag      2820
     tcccacccta                                                             2830
//
ID   hAT-N3_DEl  repbase;    DNA;    INV; 527 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-527
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4024-4024 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 527 BP; 181 A; 97 C; 58 G; 191 T; 0 other;
     cagtgttggg gtgtacctag atacttgtac ctaggtacac ttttttgata ccttatacct        60
     tacctaggta aacaaatatg aggctacctt ttaccttacc taggtaaaga ttttattatg       120
     tatttaggta ctgaaatatt tttattcaat tttgttttca aattagcttg ataccactaa       180
     attgaatttc gtattctttt ccccaatatg taaataaaaa ataaataatt tcactgcaaa       240
     ttaaagaaaa gttaattcca ccgcacatgc aagataaaag atgtttcttg ttacatgttt       300
     atgctacaac atatacacaa tatcacaatt cctctgcaac ttcgtgaaga acaaaacgat       360
     taaattaaaa aaaatggtat taaaaatgtt tttttacctt ttttgtacct tttaccttac       420
     ctagatacat aacaaattgt gtacctttta ccttacctaa gtacttattt tcacaaatac       480
     cttgtacctt acctagatcc aaaaaactag tacctttccc aacactg                     527
//
ID   hAT-N3_DTa  repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-732
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6161-6161 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 732 BP; 285 A; 110 C; 119 G; 218 T; 0 other;
     cagtgctgcc atcactcagc ttgaaaaacc ggacagaaaa gccaaaaaaa acagggaaaa        60
     agaggacaaa aaaatttaaa aaaggacaaa aaaaaggaca aaagtaaatg cgcctccatt       120
     tttctgtttt taccaatggg tgatatattt acttaatata aatggatttt atattaaatt       180
     caattatgta atgatctatt gcgcccgact cacaaccttc ttcgtttgat cattttacca       240
     tggtcaattt ttgtgcgtat acgtaataat ctaaaattat taaaataata aaagcatttc       300
     aagtaactat attggtaata caaaaaaatt caatatctgc gtcaaacccg aataagagtc       360
     gttcaaatat gaaatttttt tctgacaaaa aggctgagag taaaaattga gaacttttta       420
     aagtgttttc ctcttttttt tgctacagaa aaaatcgtac tataaagaaa gtccatcgac       480
     tgcattacat ctctttgata atttgtaaaa agaattattt ttaaagtgcc gaactgtaag       540
     aataatggtt aaaacggcgt tttagcatat aaaagcaggt ttatacactt tcgactagca       600
     aaaagaacac tcaaaacctt atctttgaaa aaaggacaga tttccggata ggggatgttt       660
     gaattttttt ccggataaag tcgttaaaaa aaggacagat ctgtccggaa agaggacaaa       720
     atggcagcac tg                                                           732
//
ID   hAT-N3_LMi  repbase;    DNA;    INV; 1000 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1000
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2928-2928 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1000 BP; 340 A; 175 C; 169 G; 315 T; 1 other;
     tagacctcgg attttaggta aaaacctatt ttgttcctca ttaaataaag gcaataaaag        60
     ttgtacatac acgaattatg caaatttatg atcgaaaacg ctagttttat agcacctaaa       120
     aatacctaat tttaggttag tacctgattg tacctaaatt ttaaaaatcg aattaaataa       180
     aaaatgttat gccaaaaatt ctctcgtggt cttcccagct aagaattctg caaatatttt       240
     atcgaaaatt gtaattttat agtacctaaa gtacctaatt tcatattaga acctgacgta       300
     tctaattttt aaaaatccag acattagaaa cattgttctt aaattgccgg aggaggcagt       360
     gagtattact tcagctaaag atgttctaaa agacccaaca atttccaacg acattgcatg       420
     cataaaatct cattatgcat ttttggtccc tattattaaa tctctagagt gttcagggaa       480
     accagtctac atgcaactgc kattgataga agaggtgaca gaaaaaatca acttggtccc       540
     aggttctgtt ggtatgaaag ttagtgagaa actgaagaca gtgctacaaa aaactgcagg       600
     actgaccacc ctctgcacag tggctgacat ctcatcaggt aaatcaacag aacatgagtg       660
     tgcggcccca ttgcgcctaa taccgtcatt taaatatgct ccggtgacat ccgctgacgt       720
     ggaacgctca ttctcagcat ataagatgct attaacagac aagagatgca gtttctcaac       780
     ggaaaatctg gagaaagtgt tagttattta ctgtgactgc aattatggac atggacaata       840
     aaataatgtg gatttttgtc aatctgttta tctttctaga caataaaatt tcagattttg       900
     gtcacctatt ttctgatttt tataacctat ttttgtaagt gatagaacct attttaggta       960
     cctaatttaa gatttttaga acctaaaagt ccgaggtcta                            1000
//
ID   hAT-N3_PPo  repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-N3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-244
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2757-2757 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 8bp TSDs.
XX
SQ   Sequence 244 BP; 73 A; 31 C; 68 G; 72 T; 0 other;
     cagtgtttct caaagtgggc gataacgccc ccttgggggc gtttgaaacc tagagagggg        60
     cgttataggg ccccagaaaa aattgggggc gttgatatgg gttagggggg cgatgcataa       120
     tttgtaattt catttatttt atatagtatt ttaaatttca ctaaaattgt ataaaaatgg       180
     ggggcgctga aagatcattg attttcaaag ggggcggtaa aagaaataag tttgatatac       240
     actg                                                                    244
//
ID   hAT-N3_PXu  repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio xuthus: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-N3_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-235
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2723-2723 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8bp TSDs. 4bp TIRs. ~72% identical
CC   to hAT-N3_PPo.
XX
SQ   Sequence 235 BP; 75 A; 34 C; 51 G; 75 T; 0 other;
     cagtctttcc caaagtgggc gataacgccc ccttgtgggc gctgcaggtc tcaagttgcg        60
     ggttatagta aaagtttcgt ttagaattct ccgttaatat acatatatag gtcacaataa       120
     ttaattaatt taatttgaag ttatagtggt ttttaaatat gtgaaaatat gggggcgcta       180
     aaaaaatatt tattctcaaa gtgggcagta gacaaaataa gtttgggaac cactg            235
//
ID   hAT-N3_RPr  repbase;    DNA;    INV; 873 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-873
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3344-3344 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 8-bp long.
XX
SQ   Sequence 873 BP; 266 A; 176 C; 167 G; 264 T; 0 other;
     cagtggtcgc caaacagtcg atcgcgagct accggtagct cgcggggtaa ttttgggtag        60
     ctcacggcca cgctcgggtt ggcaaccctg agttgcttgt ccaaaaagct cgagctgtgg       120
     gaaaagaatg ttatccagtt tgaatataag cactttccta gtctgaagaa gattagcacc       180
     tcagcaataa ccaagaatac gttgaaattc tttcagactt aagacaacaa ttcgatcaac       240
     gattccaaga ttttaaaagc atattgattg tggcacaatt cgtcaactct ccttttgtag       300
     agatcgatgc agaagatttc tcagcttgtg ttgtaaaaca tttcggtgga gatcaggctg       360
     cagttgaaat ggaatttgtc gattttcaaa atgatctgtc tctaagaacc ctttctacca       420
     ctggaaatat ttggcctcta gtcccccaaa gaaaaatatc caattgtaat tcaagttgca       480
     ttgaggttga aagctatgtt cagctctacc tacttgtgtg aagcatcttt ttcaagtatg       540
     aagttcataa aaagcaaata tagaaacaga ctgaccgatg aacatttgga caactgcatc       600
     agaatggctg ctacaacata ctctccaaac ttcaagaaaa tacttgatga ccaaaaacag       660
     ttccactcct ctcattgaaa tgtacatttt aactttttgt tacacttact gtcagatatg       720
     tagattttaa tactagaaat gtatgtttgt aggcaataaa cgtgtgttaa ttccattttg       780
     cgtactttct ttcgtccagt attccttggt agctcactag aagatttata aatgctatgc       840
     tagctcacac gctcaaaagt ttggcgacca ctg                                    873
//
ID   hAT-N40_DTa repbase;    DNA;    INV; 1015 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   16-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N40_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1015
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6151-6151 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1015 BP; 330 A; 198 C; 196 G; 283 T; 8 other;
     cagagctccc caaaagtgtc cccattttac aggctgtcag aaaaagatct gttaccttag        60
     gacactatgg aaaaattata gagagacact ctcaaagtgt tttttgtttc aaagtgtctt       120
     agctcagaca ctgagcattt ccgtttgttc tatttaggaa cctgttttcc tgagacactt       180
     tgcctttcag aatctggcga aagtgtcttt ccatattaaa tgtgatttgc cagcataggg       240
     gtgacacaga aatctcttcg ggcggaattc ggttggaatc tgcgtgagca tcaacacaag       300
     ttccatacga atttcgccca aagagagtta cgcgcacccc cgcggataac aaattccatg       360
     aggccgtggc gtcacttcct tgattaagaa ttgtagtttt ctaaaaacta gttcgagcca       420
     attcgactga atgtttagaa ataaatcaac cgcgaattct tcagaagaag aggacccttt       480
     gtgaaaatgc gttttggtat caggagaact aacwctcctc agacgmmtaa ggaawaccca       540
     ccgcgaattc ttcagaagag gaggaccctt tgtgataatg cgtktttkgt gtcagacgaa       600
     cttactctct tcagacgaat aggaaaaaac ctaccgcgaa ttcttcagga gaagacaagc       660
     cttcacaaca ttttgtcgtt taacaatgaa ttacaatatt taaaaatgtt gccaaaaaac       720
     aaaatttaag taaccgcaga tatataatag tattatacaa ctaggtacta tgcactgtat       780
     taattttggc taagatgttt agagcaatat aggaaaatta acatttgtaa cggtaacagg       840
     acacttttaa attccagtac gaaaatgtgc tcccttactg aacgtaacat aaacgagtaa       900
     aacaaaacaa agtgtctttk ctcagacaaa gacagagctt tacaaatttt ttagtgttct       960
     gatcggagcc cgacagggta magaaaaatg atcgagcatt tatttacgag ctctg           1015
//
ID   hAT-N41_DTa repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N41_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-264
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6174-6174 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 264 BP; 95 A; 34 C; 38 G; 97 T; 0 other;
     cagggaccgt aaataatcat tatttgagat ttttatttta aaaggcctac tgaggttttt        60
     acaagtttta atcaacaatt taactggttt ttatgcactt tatagacatg aacaaataac       120
     agttaatttg ctttccagat ttgttgaaat gcatatactt tgtggacaag agtaaaaaga       180
     acgttatttt tgacgtttaa aacaaaatat cacagtagtc tttttaaaat aaaaatctca       240
     aataatgatt atttacggtc cctg                                              264
//
ID   hAT-N42_DTa repbase;    DNA;    INV; 441 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N42_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-441
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6175-6175 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 441 BP; 143 A; 73 C; 58 G; 167 T; 0 other;
     tagggttgtt aaaaaaatcg atagcactat cgatactatc gatggtttta atatttagga        60
     aacatcgatg gtttgaaccc acaatcgata ctatcgctcc aaaaaaataa ttgaatttta       120
     catgcaactt ttggtatatt ttaaggaaaa aaaagtattt taaagtatat acttaagaac       180
     acgacggtat tttaattgtt aaggctcaac atcgaatttt gtttcacttt aatcgctgta       240
     aaagttagac cgtttctttc cccctaattt ttatgagtca accacacatt ttccataatt       300
     tgtttttcat aattttcctt tattttaaca atttgttttt tattttcttt aattgttgat       360
     actatcgata gtatcgatag tgaccaccat cgatagccaa aaacatcgat ggtgtccact       420
     atcgattttt taacaaccct a                                                 441
//
ID   hAT-N43_DTa repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   17-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N43_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-211
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6176-6176 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 211 BP; 46 A; 55 C; 64 G; 46 T; 0 other;
     cagtggtggc cagcagaagc agcacacata caataaaaga atgcattgct tttgtgtgag        60
     tgcgagcatg cacgaatttg cctgtgtgcg tgacgttttt cagcttgaca gtgtacatgt       120
     gcgccgaaag gctgcagcgc gctggcagag cagcggcaga gaaattgcct atcccgtggg       180
     ccctgcgcgc tgcctctgct ggccaccact g                                      211
//
ID   hAT-N44_DTa repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   18-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N44_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-140
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6229-6229 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~82% identical to consensus.
XX
SQ   Sequence 140 BP; 38 A; 34 C; 32 G; 36 T; 0 other;
     caggggcgta ggcagggggg tttttgggtg ttaaacccct cctttcgggt gaaatcctat        60
     gcaaaatatg gttttcaaaa gtatgctaca caaaatttgt actgaaaacc cccctcaacc       120
     aaatcctggc tacgccactg                                                   140
//
ID   hAT-N45_DTa repbase;    DNA;    INV; 814 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   19-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N45_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-814
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6177-6177 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 814 BP; 262 A; 143 C; 149 G; 260 T; 0 other;
     tagggtgggt cgatttggag gtcaacaaat cgtagggggg gaacgtattc tatagactat        60
     tctaagcaac attgccaaag aaactatgcc ttggaaacca cgtttaaccc tccgcatttg       120
     caagagaaca atactggttt tttgatgaaa aatatctcag tagccttgac tttggaacat       180
     ttgtatggac gcgaaaaaag atataaatcg tttgggcgga acataatcaa tggaccattc       240
     taagacatat tggccaagaa actatatgcc taaaaccacg tttgaccctc cgcatttgca       300
     aaagaaaaat actggtattt cactttattt ttgagaaaaa tatcatagta gccgttacta       360
     atatacaaaa taacagtatt aaaaaaatgc tttaaagaga acaaaacatt tttaacaaag       420
     gggagaattt aaaattgaca aatatttcac ggctactatg atattttact caaaagtaaa       480
     acgaaatacc agtatttttc tcttgcaaat gcggagggcc aaacgtggtt tatggcatat       540
     agtttcttgg gcaatatggc ttagaaatgc ccagagattg ttttccgccc aaacgatttt       600
     ttacgttttt caggtccatt ctagtgtaga aattttaggg ctactgtgat atttttcatc       660
     aaatactggg tttttttctt ttgcaaatgc ggagggtcaa acgtggtttt caagatatag       720
     tttcttttgc aatattgctt agaattcttc ctagattgcg ttccccccct acgatttatc       780
     actttttttt gcccatacaa atcgacccag tcta                                   814
//
ID   hAT-N46_DTa repbase;    DNA;    INV; 520 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   06-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N46_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-520
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6178-6178 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 520 BP; 198 A; 70 C; 52 G; 200 T; 0 other;
     cagggaacga aaataactgt tattgtaaat ttttcataca aaaaaatcac gcacttagaa        60
     gggtcctaaa aattttttaa atacaccaca atttttatta gccattgtag tttacaaatc       120
     cgtaatgatt tttatttttt gatttttata ataaaactca aaaaataact gttatttttt       180
     gatttttatg aataacagtt attcccttga catttttgaa aaaatgaaat aatttaaaaa       240
     aaacataata cccgtgcttt ttataactta ctaaaaattt gttaaaaaag gcaaccgcgc       300
     atattttata cctatatttt ttttaaattt tgtttaccca caaaatcgcc ataaatcaag       360
     tttgagtttt attttgatca cgacgaataa ctgttatttg tcaactttta ttataaaact       420
     caaaaaataa cagttattct ttgagtttta ctttacaaat cagaaaataa ctgttaaagt       480
     gtgattttta aaataaaact tataacagtt acgttccctg                             520
//
ID   hAT-N4B_AAe repbase;    DNA;    INV; 2622 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.01, Created)
DT   25-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2622
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2622
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 153-153 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus. The sequence 405-925 is an
CC   insertion of non-autonomous Chapaev.
XX
SQ   Sequence 2622 BP; 870 A; 410 C; 423 G; 919 T; 0 other;
     cagtgccgta gcgtgcggtt ggccaggttg gcacccgcca agggcgccag cctacagggg        60
     gcgccaaaat gcgtgaaaca cttggtattt attttgaaga tattaaatta gggaatattg       120
     aattattgaa tattgaaaaa atcttatcag taacaatttc aaaagaatta ttggacataa       180
     tatagaaaaa tatgaaacaa tttctgaaaa gtttttaaca aaatatgcaa taggcatttc       240
     aaaatatatt gttcatacct tgtatatatt ttaaagcttg aagttcagat aattacacct       300
     aaattaagtt tgttaatgag aagaaacaaa gatttttatt atttagattt gtatgtatgg       360
     tagaagttag actatatgtt tcgatcacta gagttattta ttaacccctc tactagtagc       420
     tccagtgttt accgcaataa gaaaaaatca attcgcgata acttttttgt ttcttgatat       480
     tttaggacca ttttttcaca aattctaaaa aaaactcttc tatgatattg atgatattga       540
     tttattatat tgatcattgg tcatctggat cgggagattt tccgaaattc cttgggggac       600
     cgacgcctag ccataaccca cgttaatttc tcaggctaca gaatttttgt cgtattcgga       660
     tattcactct tcggaacaat acattaatga cagtaggttg tgaaaaaaaa atgaagcgat       720
     ttgatgcagc cgtcggtccc ccaaggaaca ttggaatatc ttcaaaagta gatcaccaat       780
     gtttggtatg gaaatggatt cataacctaa aagagttttt ttttgtgaac ttgtaaaaca       840
     atggtgcaaa tattgagaaa caaaaatgtt atcacgattt gaatattctt tttcgtggta       900
     aaaaatgaag ctgctggtag aggggtttta attacaagaa acacattccc gcctacattc       960
     taagccttga aaaaggttgc agaatcatga ccaaattcgt agaaaacagt gtcactcaat      1020
     cccaggctgg atcctaagag aaattttcgt agaaaagtgt acaaatttgt ctaatatcaa      1080
     aattagtttt agttaaaagt agttttctct aaatttttcc tctttttagt aaaaaatcat      1140
     ctttcatgaa gtcactgaag gtcatatttc ataacttgaa aattcacctt caagtcgctt      1200
     gcgctacctc taaatcttaa tatttttgga tcatatttga ggtttccctt ttcacgtgat      1260
     tcaaatccag aagagcacac gaatttttgg ttttgagaac tttcgaaaaa taagccgcac      1320
     cctaatgtgc atgaatctaa cataatcctg agcgggatcc acgaaactct gggcagaatt      1380
     tcaacagaaa attggtcaag attctctcaa aatcaaggac aggattctaa gcaaagctct      1440
     cgcttcgtct tgatcggtct tacacataat ttcaagtgtc attctgaaaa aatgttgagt      1500
     aatttttaaa tcttcatttg attttttact gctcgaaaat tcccacagca gacataattt      1560
     tagaatctat aatacatttt taataaccta aagaatgttc tatacaagct gaaactcgtt      1620
     tggtgttcca taaaagattg tagtagaatg gttgaatgtt actttttaca cctcttcgat      1680
     attttttatt aagatttgac ctggcagtga ttgagatttt tcttgtttat ttggtgtttt      1740
     ttttcatcga aagtatatat ggttaacttt cttctaatag atcctcgatt aaccttctca      1800
     tccaccgtga aattcaatta aaaggttctt aaaaaaactt ttaaaatttt tgtaaatact      1860
     tcctttttat ttggtatctt actgtgaaaa cagctttcaa agacaatggt tatatcgatt      1920
     atcatttgaa tacataattg aggggctact ctttgatgta tttcaagtaa tttactattg      1980
     attagttaca aaatttgtga tttccacatt gctgttttgc aataacactt ctagaggaaa      2040
     acttgactaa atctacgcaa aatttataaa aaaaagttct tttcaaatct taaacaattt      2100
     tcttcggttt ctgtacgaat atcttgaaaa aatgaaatat atttgatttt ttttcttttc      2160
     gaattctatt tcgggcataa gctcctaaat tctttctagt tcttcagggc aaaaaatttc      2220
     aaaactctgc ctaaaaacag atggatgttt gggaggattt ctttaaaaaa ttgtatttca      2280
     ccataatttg aaaattttgc ctgaaacatc taaccatatg aactataaat ttcttcggaa      2340
     tttttcagag catctttcag ataacattca aaagttctca gaaaattttc attggacaaa      2400
     taaaagaata aacatatttt cttggcggat tttagtcaat agtgtaatgc gttctgaact      2460
     taagaaaata ttttaactaa ttatgaaact tttgatgatt ttcataaaaa ttcttgtaga      2520
     aatcgctcaa agtgtttcaa aaataatttt tgatgagctt tgatttaggg gcgctaaaat      2580
     ggaggttcgc caagggcgcc atgataccac gctacggctc tg                         2622
//
ID   hAT-N4_AAe  repbase;    DNA;    INV; 1612 BP.
XX
AC   .
XX
DT   25-DEC-2018 (Rel. 26.01, Created)
DT   25-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1612
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1612
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 125-125 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1612 BP; 527 A; 253 C; 261 G; 569 T; 2 other;
     cagtgccgta gcgtgcggtt ggccaggttg gcacccgcca agggcgccag cctacagggg        60
     gcgccaaaat gcgtgaaaca cttggtattt attttgaaga tattaaatta gggaatatcg       120
     aatattgaaa aaatcttatc agtaataatt tcaaaagaat tattggacat aatatagaaa       180
     aatatgaaag tcgcttgcgc tacctctaaa tcttaatatt tttggatcat atttgaggtt       240
     tcccttttca cgtgattcaa atccagaaga gcacatgaat ttttggtttt gagaactttc       300
     gaaaaataag ccgcacccta atgtgcatga atctaatata atcctgagcg ggatccacga       360
     aaatctgggc agaatttcaa cagaaaattg gtcaagattc tctcaaaatc aaggacagga       420
     ttctaagcaa agctctcgct tcgtcttgat cggtcttaca cataatttca agtgtcattc       480
     tgaaaaaatg ttgagtaatt tttaaatctt catttgattt tttactgctc gaaaattccc       540
     acagcagaca taattttaga atctataata catttttaat aacctaaaga atgttctata       600
     caagctgaaa ctcgtttggt gttccataaa agattgtagt agaatggttg aatgttackt       660
     tttacacctc ttcgatattt tttattaaga tttgacctgg cagtgattga gatttttctt       720
     gttcatttga tgtttttttc atcgaaagta tatatggtta actttcttct aatagatcct       780
     cgattaacct tctcatccac cgtggatttc aattaaaagg ttctaaaaat ttaaaatttt       840
     tgtaaatact tcctttttat ttggtatctt actgtgaaaa cagctttcaa agacaatggt       900
     tatatcgatt atcatttgaa tacataattg aggggctact ctttgatgta tttcaagtaa       960
     tttactattg attagttaca aaatttgtga tttccacatt gctgttttgc aataacactt      1020
     ctagaggaaa acttgactaa atctacgcaa aatttataaa aaaaagttct tttcaaatct      1080
     taaacaattt tcttcggttt ctgtacgaat atcttgaaaa aatgaaatat atttgatttt      1140
     ttttcttttc gaattctatt tcgggcataa gctcctaaat tctttctagt tcttcagggc      1200
     aaaaaatttc aaaactctgc ctaaaaacag atggatgttt gggaggattt ctttaaaaaa      1260
     atgtatttca ccataatttg aaaattttgc ctgaaacatc taaccagatg aactataaat      1320
     ttcttcggaa tttttcagag catctttcag ataacattma aaagttctca gaaaattttc      1380
     attggacaaa taaaagaata aacatatttt cttggcggat tttagtcaat agtgtaatgc      1440
     gttctgaact taagaaaata ttttaactaa ttatgaaact tttgatgatt ttcataaaaa      1500
     ttcttgtaga aatcgctcaa agtgtttcaa aaataatttt tgatgagctt tgatttaggg      1560
     gcgctaaaat ggaggttcgc caagggcgcc atgataccac gctacggctc tg              1612
//
ID   hAT-N4_AP   repbase;    DNA;    INV; 808 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_AP.
XX
NM   hAT-N4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-808
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2103-2103 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 808 BP; 297 A; 84 C; 120 G; 307 T; 0 other;
     actagggccc ggaagttcat gcatttgcat gttttttttg aaccattaga tttattgcta        60
     agtgagctag aaatgcattt caagacacta cgaaaaacat atcaaaagtt tatagtgcat       120
     atttttgcat atttagtggt ttttaaattt tagagcatat ttcttaattt tacaatattt       180
     tagagcatat tttataattt atgaagatat agtatgaaaa ttcgtaaata aaaaaaaata       240
     aatttatatt aaaagaatac ttactagata ttcttatatt gtattaggta tatattgtgt       300
     tataactaca gtaaaatgtt ccaaaggcat tacaatttat aaaaaatttg aacaagttat       360
     tgaaaagaat ctgggcttta aaacactatc caaaatttcc aaaattatgc tgggagaaga       420
     aatgacaatg gataatttaa ctgaagattt ttcatgtgat gatttaatat attttaaata       480
     cgcaccaatt tcttcggttg acgtggagcg gagcttttca gtgtacaaaa atatgttggc       540
     agataacagg cggtcgttta tgtttgagaa tttatcaaaa tcgttgattg taaattgtaa       600
     tgtttaaaaa tatatataaa ttaatgaaat aatgtttttt ttttgtaaat tttaaatttt       660
     gtaattgaaa taaaaatgtt tttttcctca tatttataaa tttaaaaaaa atatttaagc       720
     atatttaagc gcatatatca ggatttttaa gcgcataagt gcatacatat ttccgtagtt       780
     tttagtgcat aaacttccgg gccctagt                                          808
//
ID   hAT-N4_BTa  repbase;    DNA;    INV; 2607 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2607
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 651-651 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 2607 BP; 748 A; 565 C; 527 G; 766 T; 1 other;
     tagggtgtgc cttatttttg agttttgcga aaatcaagtt ggtcaacccc taaaaagttt        60
     ctatgtagtc tctaaatgaa ccccctaaaa ggaaaaaatt ttaaaaaaat tttaacccgt       120
     gcctcaaagg gcctaaaggg cctaaaccca aaattcaaaa attttggcaa gcgacacatc       180
     aattctgaag gaaaatggca agttacggcc cttttagggc agaaatttcg tccgttttgc       240
     cgtatcttga agcgtaaggt cacaaacggc ccaatgacga cgtgaggcta tgggctggcg       300
     gggcgcgccg cggccggccc gccgctgagc gtgcgcgcgc ggcagggttg cgtatcgccg       360
     ctttacaacg gcgtagagga acgaacggtg gggtgggagg gggatatccg gtggaaaagc       420
     atccacattt tctatccata ttgaaaatgc attatacttt ttcaatatag atgaggaaat       480
     atgagccata caaggaagtg atgaaaagag tgacaaatac atatatagtt tgtacggtta       540
     ggagtgtaag tggggaaaat ttgccgtaac tacagaacag ccctgaaaat ctccgggaaa       600
     taaaagctgc tattgatgag aggtttgcat gagaggttta attaaggact aattaaaaag       660
     ataggtgcga tgttgtcgaa tcgtaagccc tttacgcgat caaaagcgat tagtgtaaat       720
     ttaattggaa aagtttaaga aaaatttgat gaaagaaaat tgccccaaat tcgggaagtg       780
     cttaaagtgt ttttctatca tgtgaagtgt tcgcacatga atgtcaatgg cagtaattcc       840
     aatatggaat gaaaaatgta gaatccctgt gatacatagt gtctatgttt catccaccca       900
     ccttttcatt agtgcattta acgtgacatc aattagaaag tttaattcga gaggttcaat       960
     atggcttacc cacttacatt ttctggtact gaaccccccc cccccccccc ccgccacagt      1020
     tacttgctat aatcaaaaat gtaatattag tttctcgaaa aaatatgatt taatttgggg      1080
     tttgaacccc actctttata accgtgggca atgcccttga ccactcggct actggggaag      1140
     atttgagtaa atgaggctaa tgtgtcattt agccccgtgg gtgaggccag gcaatcaaca      1200
     tcagctgtaa gttggcgaag ccagattgaa ccgattgaat aaaactttct aattgatgcc      1260
     gcgtcaaata caccaatgaa aaggagggta aacaaagtct tattgatgta tcaaaccttc      1320
     agtgatttca tatgaaatga aaaaacctat tttcttccgt ttggcgggac tcataagcga      1380
     gcgtgaattt ttcctgtcga gaaactctct cctgggcgcg agctttcttc ttgtctgctc      1440
     tcctcacctc tgctgcaagg atagtatcct tcactgtgga tattatgcat tctcatccag      1500
     gttttcgctg aagaattaaa matgctttat cctcttcatt ttccatgata tctagagtat      1560
     tgcataaagc aatgtcgaat aacacgtcga tttttgccgt aaaatcagtc tccaaattct      1620
     cttgaaccag cgatcgacgg ctagcatttt ttgatacgcg cctccactcc tcataaaaat      1680
     gtaaacattt ttaaaaacat ggacactatg tatcacaggg attctacatt tttcattcca      1740
     tattggaatt acaagatcag aggttttcga cgcaccgcca ttgacattaa tgtgcgaaaa      1800
     cttcacataa tagaaaaaca ctttaagcac ttcccgaatt tggggcaatt ttctttcatc      1860
     aaatttttct taaacttttc caattaaatt tacactaatc gcttttgatc gcgtaaaggg      1920
     cttacgattc gacaacatcg cacctatctt tttaattagt ccttaattaa acctctcatg      1980
     caaacctctc atcaatagca gcttttattt cccggagatt ttcagggctg ttctgtagtt      2040
     acggcaaatt ttccccactt acactcctaa ccgtacaaac tatatatgta tttgtcactc      2100
     ttttcatcac ttccttgtat ggctcatatt tcctcatcta tattgaaaaa gtataatgca      2160
     ttttcattat ggatagaaaa tgtggatgct tttccaccgg atatccccct cccaccccac      2220
     cgttcgttcc tctacgccgg tgtaaagcgg cgatgcgcaa ccctgccgcg cgcgcacgct      2280
     cagcggcggg ccggccgcgg cgcgccccgc cagcccatag cctcacgtcg tcattgggcc      2340
     gtttgtgacc ttacgcttca agatacggca aaacggacga aatttctgcc ctaaaagggc      2400
     cgtaacttgc cattttcctt cagaattgat gtgtcgcttg ccaaaatttt tgaattttgg      2460
     gtttaggccc tttaggccct ttgaggcacg ggttaaaatt tttttaaaat tttttccttt      2520
     tagggggttc atttagagac tacatagaaa ctttttaggg gttgaccaac ttgattttcg      2580
     caaaactcaa aaataaggca cacccta                                          2607
//
ID   hAT-N4_DEl  repbase;    DNA;    INV; 335 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-335
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4025-4025 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 335 BP; 78 A; 65 C; 72 G; 120 T; 0 other;
     caggggtgct cacgcctatg cacatggagc acaattgttt ttgtaaatgc acatgcttat        60
     ggagatgtga gggccggcac attaggtaag cttgctgggc acattttgct atacactaac       120
     aatttttcgt ttcttccttg cggtccaatt cgttactgat aagaccgagg caaggcaaca       180
     acaattacat tgtttttttt ttttggatgg ctaagtcaaa tgaaatttgt ttttgtcttt       240
     tcctcggctc tacactgaat tctttacttg tgttcgtgat cttttttaaa tgtgttggta       300
     aatgcactgc cataaggcag ttttgagcac ccctg                                  335
//
ID   hAT-N4_DTa  repbase;    DNA;    INV; 780 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-780
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6162-6162 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 8-bp TSDs. Other TE insertions are
CC   masked out.
XX
SQ   Sequence 780 BP; 268 A; 103 C; 110 G; 298 T; 1 other;
     tagggatgtc aaatatttta aaaatatcgt atcgctgata tattttcttt aagaaaaata        60
     tcaatatgat atataatata tcgccaaaaa acatcgatat atcagatact tttgatattt       120
     tttttcagtt gaatttcaaa attttagccg cgtaaataag ctaacaacaa agacttttgc       180
     cctaaaatta atgtaaaagc actagaaaag tattaaccaa ataattcgtt ttattaaatt       240
     ccttatttta ttagttccac acaaaaaagt ttttgttttt caagtgggat aacatttttg       300
     atgtattccc acttgtttta atagttttca aataaagttt gcacttagtt tgtttttatt       360
     attatttttt tttttttttg gctttgattt caacgaatgt tgaaaatgaa ggttggtcgc       420
     acgactagtg catatgacca gatactttgt cttgattttt gtgttacaca aacttaacct       480
     aaaaatgaat ccactccacg aggtcccttg ccctacccgg cgtgaaatgt gcgtgtttct       540
     tcaaaggcct gtgaatgtgg actgwtttat taatttcacc gaaataaatt ttaacacgct       600
     taattttttg atgatgatat gagagatgag atgagagaaa gatatgcaaa tatcaaataa       660
     tatcgaaaaa taaaatatcg atattgtgat atttggctaa ataaatatca cgatataaat       720
     atattttttt tgcaaaaaat atcgatatat tgatattttg atatattttt gacatcccta       780
//
ID   hAT-N4_LMi  repbase;    DNA;    INV; 2408 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2408
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3062-3062 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. Terminal 40-bp are similar to those
CC   of hAT-38_SSa.
XX
SQ   Sequence 2408 BP; 757 A; 463 C; 428 G; 754 T; 6 other;
     cagggttggg aaagttactt ttttaaagta actaagttac agttaaagtt acttccctga        60
     aaggtaactt agttacagtt atagttacta tacatcgaaa gtaactgtat cagttacaag       120
     taactttaca gttattttta cagttacttt taaaaattgt aattgtaact catttgtaaa       180
     tccgtaataa accttactcg tgtagaaagg aaacaagctt taatgtcaat caataattaa       240
     atacattaat acatacataa taataataca taattaatgc attattaaat aaattgtcca       300
     cagcatcttc tatctcattg catctcaatt tcaatgtttg ttcattttca ccaaatgtag       360
     tttttcaaac gttccatctc atgaaagtta cgtttcatct tgttcgttgt tcgcgtctcc       420
     gtgaaaactg ccgaatttgt tgtctactat atattcgcag cgtctgttac gctgaaatgg       480
     cagcaatgag caaacatttc aaaccgtgta ttcgcatcga gagctacgct atgacaggtg       540
     aagaggaaga attagtgata tggggcgctg cattaatagt aggctactcg acgaaataag       600
     cagacgaaga agacgtagtt gtcggaggag ggcaaaatac atactataga agatgtgacg       660
     ggaatgacac gctcatttga atttgaactg acaggctgtg cgagctgaat ttggaagaca       720
     tctctscttt tcgtaacttc accaagatgt cgccgtcaga ttttgaaatt ataatgaata       780
     ttacagggcc agttgtttca aagaaaggca caaagttcag aaaaacaact cctgtgaaga       840
     gaagacttgc tgttactctt tgtttctcgg caacaggaag tgcctatgaa acccttgcat       900
     atttattcca catttcaaag ccagccatgt cattactgtc cccgcagttt gtggagcttt       960
     ggatgaaggc ttatgtaaac gtaattcagt tatattaata gcactgaaac atatttaatt      1020
     gatcgtatat ttatttatgt tttcacatta ttccaaatcg tcattttcaa tgaaggaagc      1080
     ttctttagcc ttaaagtcac tcacactaca aatgaatgtg acaaggaatc tgctgctgac      1140
     gatccccttt tcacgtccac gtttagtaca cactgctgcc tcctacatac attcatttct      1200
     gcttcataaa aagcgctgta aaaacaaaat gttgtcatcg ctctttcatt ggccggcaag      1260
     taacgtaact tgataacgac tcattttcca aaataagata acgaatcctg ttgttattgc      1320
     tgcggtgttg agaaatgaga gacttaattg ttttatctac ttcacatacg gctggtgcca      1380
     aacaatgtag caattttctg tagggagtca tgcttctttt taattatttt tatgacatcg      1440
     aacattccac aggcactcct ctgcctctta ttaggtgacg aattcgtaaa tgttgcttct      1500
     tgtctacttc atttcgtgaa kgaacacacg gaaagacaac atgtaactct atagatacac      1560
     agagaaaaac cgaacactac cgctgcaaag gagcatttag tgctagcaag ccacggacat      1620
     tgtttcttta ccgacactgc cacggaacgc agcttttgtg ttgccagcat gttgtgaaaa      1680
     tcggtaccat agtccagaac tagcagcgag caacgttgca gaacatgttt caaactcatt      1740
     gtaaacgcgc cttaacgcca acgagcaagc aaaaactaac ttgtacatga attcttaagt      1800
     tcgctttgga gtttcgactg ctttgaattg ttttcccacc gcgacacaat ttgcagcaaa      1860
     aggaatcatt ttttccatcc aacgtcaaaa attcgaacac ttcagcataa gctggccaag      1920
     gcatgcgtgt gtcttcttcc ttctccatgt cgaaaggtgt ggaaaataat cggagactgt      1980
     acgctgttta cgtgtgacgc gtcaggtgat tgttatatac tcattgttgc gtacataatt      2040
     ataaaataaa aatgttatga atgaatgggt actattaaat gttataatgg tactgaaata      2100
     tatatttcat acatttccaa cgtacattgt tgaaaakatk taatttagaa ataaatattg      2160
     tttctttttt ctcttcacta aaatcaaagc ctggtattct gcagtcttga gattcttaca      2220
     aaaaatatgt tacgctactw gcgacaaaaa agtaacgata cttccgttaa atcgttaacc      2280
     gataaaagta acttagttac agttaaagtt actttakgca aataataacg ccgttaccgt      2340
     ccgttacctt tgaaaagtaa ctgttactag taacggcgtt acaagtaacg cgttactccc      2400
     caaccctg                                                               2408
//
ID   hAT-N4_PPo  repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; nonautonomous;
KW   hAT-N4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-140
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2758-2758 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. ~70bp TIRs. 8bp TSDs.
XX
SQ   Sequence 140 BP; 31 A; 40 C; 37 G; 32 T; 0 other;
     caacggcgga tccagggggg gggtcatggg gtcatgaccc ccctgagagc ttgacaaaat        60
     atatttacat attttgtcaa gctcttgact tgaccacgac tatgtgaccc cccctggcgc       120
     caaagctgga tccgcccttg                                                   140
//
ID   hAT-N4_RPr  repbase;    DNA;    INV; 619 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-619
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3345-3345 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 619 BP; 219 A; 104 C; 100 G; 196 T; 0 other;
     cagtgattcc caaagtggtc tatatcgacc cctaggggtc tatgacaacc tgcaaggggt        60
     ctacctcagc gcaaaaaaaa tttgggggtc catgaaatga aaatgggggt ccacgatagt       120
     ggatctcaac acatacactg atagaaccta tttacttaca tcatactatc ttataatatc       180
     aaaacatatt cagcgctgtt atcaatctcc taacgaaaaa aagaaacagg ctggacatca       240
     ttagccgagg agatttaaga ttaaccctta caaaattgac gccaaatgtt gataatttat       300
     tattaaagca tcaggttcat ccttctcact aaaaatattg acttattgct tatgttattt       360
     tatttatagt ttattttatg tttattcaat gttacgtaca ttttacataa cagatacaaa       420
     attttatttt gagtagtttt aatttaaatt caattaataa atgtataaat taacatgtgt       480
     ttttacttta agtttttaac actaaacttc actacagtta gaaatttaca ggaaatcaat       540
     atcaggtaag tagggggtct acccaacacg gaaaaacatg gcaaggggtc tacgacacaa       600
     aaaagtttgg ggaactctg                                                    619
//
ID   hAT-N5_AAe  repbase;    DNA;    INV; 1127 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.01, Created)
DT   31-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1127
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1127
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 126-126 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1127 BP; 355 A; 185 C; 207 G; 380 T; 0 other;
     catagtttcc caaactgtgg gtcgcgaccc ccaggggggt cgtgagctag tctttggtgg        60
     gtcgcgaaaa aattccaaag tacgaattta tttccaaagt ttttttctat gtttccttaa       120
     acttaaattc ttactttatg acaaaacaag ttttttccaa tgatcaggaa ttcagtcagt       180
     tggcactatc tatattattc taaggttaag gtctaaggct gagaagaacg tcgccaatac       240
     agccttcttt aatcgttctt tcttaataag ccatactcga acttccatga gtcgaagaga       300
     atattggccc atggaaatat cgaatgtgat gaacattata gtactcaggt ttttttttta       360
     ttttcaatat ggttcacggt ttcaaaatct ctattatcat caaacctgca tgcttctccg       420
     atatttctac gaaaacgttc agcattcggt ctaagatttt gtggttagaa ggataaaaaa       480
     tattctgtcg aaaaaaaatt cacataccta caattttagc tgcgaaattg tcttttcttg       540
     gattgagttt gtaaaacaat ccttaaactt gaaagtattc cattttctcc aacaaaatat       600
     tttcaaactt tcagtatgtg aagcaaactt tcaaggtcga atagttattg gtggtgcatg       660
     caacttcgat tataatcgaa atattgattc cgtgtggttc cgtgagtcaa tattgagcaa       720
     tggaacatcg actcatggag gtgtgactta attggaaaaa aaaaaaatgc tagaatataa       780
     tcagttctat atggaaattt gattgatgtc gagacattca atcaatcctt agtgttgtta       840
     aaagaatttt ctatattgag acagaaatct tgtaacgagc agttgcaagt acaaaagtaa       900
     aataaatgat tttattcact gtttttttaa tcaaacatag tgcatgtcaa tgtcaattac       960
     gtgtggtatt gtgatattgt gatcaaatct cattcccatc atagtaataa gtgacctcag      1020
     aagcttcagt acaaaacttg tttctgtaca atttttcact ggtgggtcgc aaagaatacg      1080
     cttgttggat aggtgggtcg cgcaaccaaa aagtttggga agctatg                    1127
//
ID   hAT-N5_AP   repbase;    DNA;    INV; 1039 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   25-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; hAT-N5_AP.
XX
NM   hAT-N5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1039
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2104-2104 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   8 bp TSD.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 1039 BP; 374 A; 125 C; 159 G; 380 T; 1 other;
     actaggctta gggacttcta gcatttgcat acttttgtta attattgtta aaaatagcag        60
     agtgcgaaat aaattcattt ctctgtgcca tgatatcaga tctaaaattt gaatgtgcat       120
     atttttgcat atttgataga ttttgcagga aagtgcttat tttaaaatta atatgcttat       180
     tttgcatatc ttgcatattt tcacaatttt ttgtaaaaaa aagtatttgg aaaagaataa       240
     ccagtgtaac ttggcattta ttaaattaaa tttcggatat ttacccaaat ccataacatt       300
     tttggaaaag aaaggaataa aattatccga ttcattaaaa actgtcgaag atgcgaaaaa       360
     taaaattgtt gacttaaaat gtacaaaagg caaagcagtc gtacagaagt taaatgacgt       420
     tttagacaaa aatcatggtt acaaagcttt attaaaaatt tcaaaaattt tgagcggcga       480
     agttgaagat atggaaggat tgcctgagga cttgacaagt aatgatttgg tttattttat       540
     gtatatgctc caatgtcgtc tgtagatgtc gaaagaagtt tttccgcgta taaaaattta       600
     ctgtcaagta atcgtcgtag attcacgttt gaaaacatca ggaaatatct ctttgtncag       660
     tgtaattttc aaggtaaaga aattaataaa aaaaataaga attaaaacat ttaattattt       720
     aaacattgtt ttgttcttac tttaggatcg gtagacacgg aagaacacta aaatgtaagc       780
     caattacctt ttaaaaatta aatttattaa atcattttaa attcaagtac ctacctaata       840
     atattctaat atagtaatat ataatataaa ttctaataaa acaaatattt aattttacca       900
     catatttgtt atacttcatt ttttttgggc atatcttcgt gcatatacgg tttttttagg       960
     tgcatatttt agagcatatt tggccatttt ttggtgcata ttttggtatt ttttagagct      1020
     agaagtccct aagcctagt                                                   1039
//
ID   hAT-N5_BTa  repbase;    DNA;    INV; 671 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-671
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 652-652 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 671 BP; 173 A; 166 C; 153 G; 179 T; 0 other;
     caggcccgcc acatcctatc tcgggccctg gtaccagttt taaggcccgg gcccccagca        60
     cagagggggt ccgggggcct cccccgggaa atttttaaaa ttttaaatct acttggacgc       120
     attttgaagc tcccatgacg gagattttcc atcagtttct gcagaataat tacgcctttt       180
     ttttactttt agcacaaaat actttcggat tgttgcattc aaaacacctg gaaatttttt       240
     tcgggagggg gggggcagat gatactattt tcaattctag gggggtccaa gcctccctgg       300
     actccccttt cgtacgtcta tggcaaggaa gttgagccat tgaagtcgcg gatgcccaga       360
     ctggagactc ttagcatccg acgacggaag aaaatgaaac gcagttacta aaaatatcaa       420
     tctatactaa aaatcttgaa aacagataga aatcttcaaa gaagtaagga aaattccaca       480
     gtgccccagc atgtttttga aaatttattc accttttgcg aaatttttag ggtaaatttt       540
     tcacttttcc ttacgagaca agggttacat gtgaattcgt agtggttttt caccagtggc       600
     acgggcccct ccagggcccg ggccccggaa ccagggaccc agtatccccc cccccccttg       660
     tggcgggcct g                                                            671
//
ID   hAT-N5_DEl  repbase;    DNA;    INV; 191 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-191
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4026-4026 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus.
XX
SQ   Sequence 191 BP; 30 A; 54 C; 51 G; 56 T; 0 other;
     cagtggtcgg cacacatact ataacatgct cgcacttctt tgtgtgagta atttgcacgg        60
     cgaaacttgt cagtgtgtgt gtgccgactg cggttttata ctgttcgtgt cggcctctgc       120
     cgccgcgctg ctgctgctct gccgacttgg ccttagccta tactccggag ataggccttt       180
     gccgaccact g                                                            191
//
ID   hAT-N5_DTa  repbase;    DNA;    INV; 1234 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   28-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1234
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6146-6146 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1234 BP; 409 A; 219 C; 192 G; 413 T; 1 other;
     tagggtggtt tttttttgta tgaaaaattc taaggtccta ctctcacccc cttatacttt        60
     gcgcattggt gcatttaaga cataccaaaa agaaaaagta taaaaaaatg cgatttagtg       120
     cttgcgcatt gacctttaag tttatcactc atacgaactg ttgcccttga tcaaatattt       180
     taatttcata tagatggcgt agacttgtca ttacttattg agtctaaaca taaaggtaac       240
     cttgtcacct ttacaaacgg ctaaagaaaa ataaaatcgc tatggcaata taagttccaa       300
     tatttaaggg agtcgcacca caaatcaaac aaatattttt ttttatttat cgcccccaaa       360
     ctatatgcag aatatgtgga taaaaagcta tttagatatt tttaaaaatc ttaatgtacg       420
     tatcgtggcc aaaaaaacac ttgctagggt tttataacaa gtttagatcc caagtcgaaa       480
     cctaaatttt tactttagtt tgttttcgta gtctatgaat tacgtggact attattcaac       540
     aaaatcgtct agatctacat ttattgaatc cttcatacaa acagacaaac aaagcaatat       600
     aattataccg aataattcat aaatttattt attttgttat atccctgcat tatagggtac       660
     agggtattat aatttcagtc aaaagtttgc aacgcaatga aggaatgata tccgactata       720
     tattcttgat cagcatcacc aggagagtcg atcaagccat gtccgtctgt cttttcttgt       780
     taagtcgcst tattcgtcaa aggacgtact cgaatttcct tgctctccca tacgctaacc       840
     agcatttttg caacaagctg agcactttca gataagaaac tttgtttcag aggaactgtc       900
     ctgtagagca aagtacggtc ctctttaacg gcaaagtttc ttcttcatca aaattgaaat       960
     ttagctttcc aaccaaaaaa aggtgctctc cattttgtta acgattatga acgaaatcaa      1020
     atatttgaca agtgtagata tgggaaaaga tttgcctacc caaaactcat actggcttac      1080
     gtgccgtatg agtaattttt ttggaaactt tgagaccatt gcgcaagccc ttagacttaa      1140
     tttaaaattt tttggatttt agtttaagtt attttgcaca aatatcttgt gtttaaaagg      1200
     gtgagataaa aattccttat aaaaaaccgc ccta                                  1234
//
ID   hAT-N5_LMi  repbase;    DNA;    INV; 1247 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1247
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3063-3063 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1247 BP; 405 A; 208 C; 254 G; 380 T; 0 other;
     cagagatgcc aacttagcca ttttatggct agatctggcc attttgaagt ggcgtctagc        60
     cactgttttt gaaaaaaagc tactgctggc attcctagcc attttggtga tattatatag       120
     ccatttctag ccatttttat tattcgataa ttttcacaac aaaaatgcaa aactctgaag       180
     tttttattat gaatagaaat gtatttattg atttattatt tttaacgttc ctccaaagta       240
     cgacaaatga aacaccactg tatcgaaaca gtgatacctg gaagtttcga gacaatgaaa       300
     cagttccgca tatcgattca ttgttttgaa acatacaaac aatggccaac actatgtagt       360
     tgcacttgct tggaaacgct gtacaagtta caacagtgtg gtgtgaagtg tctctttttt       420
     aacgtgtgtt aacattgagt gttggaagaa taccgtgtgc tgtaccagtg ttttgtgact       480
     gtgatagtta attatctagc catgccgaaa ccgcaatata cacaaactta caggaaggaa       540
     tgggaaaata tgtctgactt caaggaatgg gtacagccag tttcaacaga ctgtgtcagt       600
     taaaaaagct ggtatgagct tcagatagct tccgataact tgaagtaccc aacaaatatc       660
     tactaagtgt gaaagaaaca ttgaaaacag tgaacagcta tactgtttgg tattgcatgg       720
     gttttgagca aaatgcgaca aattgaaaac ctggcgaaac ttaattacta aaatggcgat       780
     caaacatcga cttctacatt ctgaagaggt gtcagtaagt gatgcaggag agaaaatcct       840
     tttgcggagt tagtctcact ccaagcgaag tcgagagaat ttttagccaa gtgaacttgg       900
     tgaaaaacaa actcagaaac agacttaaaa cgaatacact ctctgctatt ctgagtgtaa       960
     ggtatggatt gagacgcgaa cataagtgtt gtttttcata tgaaatccca gaagaaatac      1020
     tgaagcttgt tggtacgaat gctacataca cgagggagac cagtgaaatc tgcagcagca      1080
     gtagcaaaga aaatgaggat gaggacgatg atatttattt ttgctaggtg agtgtttttc      1140
     acattttaat ttttatgcat aaaacatata aattataatt tagccatttc tggccatttt      1200
     tgttggactg ttttgccatt ttctctgact gatagttggc aacactg                    1247
//
ID   hAT-N5_RPr  repbase;    DNA;    INV; 1985 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   25-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1985
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3346-3346 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 1985 BP; 656 A; 328 C; 335 G; 666 T; 0 other;
     tagtgatggg ctattagagc ggactcgttc cactggaacg agtccgatgg tggaacgagt        60
     tgattcaaat ccctatttta aaaaaaagtg attccgcccc gccccaaaaa attgaggcaa       120
     attaaaatga aaataattaa tactgtagtc gtttacacta aaataaaact cacttaaggc       180
     tactatgtag aagttcactg acacattcca acttgtaaga ggaatccaca ccaaaataca       240
     aaacctggcg agcttaaata ctgatgcttg aagaataaaa taagttccaa ggttttttta       300
     gaatatcgat tctaaaataa tattcatttt attattttgt taatttctaa acaaaagtag       360
     gggtcgatct aagacaggga gtcgaaggaa aaataatttc gtacccaata tagcgaacct       420
     tgcaaagaaa caccaggcac acccatctca ttaattaaaa agcaatgctg tagttacttt       480
     acttattatt taatatttta ttttacatat agaaaatgct gtgtgcttaa tctttaactt       540
     agcggctgga cgctctttct cttatcttca ttggcgaaag ttaaatcgtg tacatgttat       600
     tacgacgatc aaagtaatac tgagctaaaa aatagtatta cctaactggt ttacttactg       660
     ctgtatccct cccactctat cacctacttc acaaacattc gtcgattgga aatgggttgt       720
     agtttaatat tcgtttcatt tgaaaacaaa aaacattata acgctttctc aagatgtttt       780
     taatttttaa aaatttgttt ttgtccatta ctcttataat atacgaagaa tttcgaataa       840
     aatataatat acaaacacag aatgatctag agtgcaggtg gagtcagtcg gcgttgtcat       900
     ggtgatggaa ccgtttaacg actccggccc aacaccagca atttcattgg ttaaatccac       960
     tggaattggt ggagtcaaat ccggagtgat ttaaatcctt ttgaaaccgg actcgttcca      1020
     ttttttcgtt cactgaatct agccaataga aaatgctgga gctggaaccg gagtcgttaa      1080
     acggttccat caccatgaca acgccgactg actccacctg cattctagat catttgtgtt      1140
     tgtatattat attttattta aaattcttcg tattttacaa gagtaatgga caaaaacaaa      1200
     tttttaaaac ttaaaaacat cttgagaaag cgttataatg ttttttgttt tcaaatgaaa      1260
     caaatattta actaaaacct acttccaatc gacgaatgtt tgtgaaatag gtgatagagt      1320
     gggagggata cagcagtaag taaagcagtt aggtaatact attttttagc tcagtattac      1380
     tttgatcgtc gtcatgacat gtacacgatt taactttcgc caatgaagat aagagaaaga      1440
     gcgtccagcc gctaagttaa agatttggca cacagctttt tctttttgta aaataataag      1500
     atattttaaa agcttgatat taattcatag taaataaata tttctttctt tatgagtaat      1560
     tatcattttg tttgaagggt tataattttt ttttatggga ataatttcct acccatttgc      1620
     gtttttcttc ttgaatcaag ttaactccgg tggtcaagct agataacgac aaaactgcag      1680
     ttgctttaat ttttatattt gactagccta tttttgttaa tatttggtta cgttgttaat      1740
     tttatattta tcagatcaat tgggaattag ggaactactt aatgtgtgtt aaagaaatat      1800
     agttttgtta ttaactggaa aagctaactt ttaattattt atttaattac aatgcgtgac      1860
     atttgtacta atgcataggg taagtacaga ctggaatcag tgaacgagtt gttggaatcg      1920
     attccaaccc tggaactgat tcaaatccaa cgactccaaa cgcggactcg ttctgcccat      1980
     cacta                                                                  1985
//
ID   hAT-N6B_AAe repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.01, Created)
DT   04-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-451
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-451
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 128-128 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 451 BP; 169 A; 77 C; 67 G; 138 T; 0 other;
     tagcgttggg caaatttgag caaaacatcg atgttactga atcgattcaa attcgatatg        60
     acgaatcgat tcaccgattt aatcgaatcc tttgaatcga tgttttttaa tcgattcgat       120
     attcaagttt gtttgtaaac acacacaatc aagtactcaa aataatacaa gatgctaatg       180
     gattcgagtt ttgattctaa ttattgaatc gtctctcgga aattaaaaat aacacattaa       240
     acacgtcaag gttaattcaa agtaaggttg atggttcaac aatttattag aacattctaa       300
     aaattttcac cacattgaat cgaaacaaaa aattgaatag agaaaatcga ttcactcgat       360
     tttgagtgcc cttaacatcg attcaaaaaa tcgattaatc ggaacaaaaa catcgatttt       420
     cggaacatcg attcaaaatc gcccatcgct a                                      451
//
ID   hAT-N6B_AP  repbase;    DNA;    INV; 614 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   29-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6B_AP.
XX
NM   hAT-N6B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-614
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2105-2105 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 614 BP; 195 A; 94 C; 98 G; 225 T; 2 other;
     tagggcagag gacttgtagc atttgcatat ttgttttgct aagtcacaaa aatagcagag        60
     tacgaaacaa atacgtttca tgctttcaca aagctagttt tgaaatttta ttttgcatat       120
     aaatgcatat tttgagtctt ttttgttttt agggcatatt ttacactttt atacgcaatt       180
     ttatactttt tgagacatat ttaacttaaa tcaatttttt ccacaccgac atttttattt       240
     caaacaatac agtcaaaatg tttggataaa aatttaaaaa atgtttgtct ttttataata       300
     wtattgactg tccgcgggca cacgtttttc ctacaagcgc ttgaggatcg ccgataagcc       360
     aataatataa tttgctgtaa ttaattttat taatagatag ataatcgtaa acgatctaay       420
     gtcgtacacc atacgacatc accaccacag tgagccgtgt gcgcactatg gattgcgggc       480
     ttttattcga ttaggattaa aaaaaaatgt agaaaaattt taaatgcata ttttaagtgc       540
     atattatagg gtttttaagt gcataagtgc ttgcatattt agtgcttttt tagagctaca       600
     agtcctctgc ccta                                                         614
//
ID   hAT-N6C_AAe repbase;    DNA;    INV; 449 BP.
XX
AC   .
XX
DT   04-APR-2019 (Rel. 26.01, Created)
DT   04-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-449
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-449
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 144-144 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 449 BP; 168 A; 80 C; 66 G; 135 T; 0 other;
     tagcgttggg caaatttcag caaaacatcg atgttactga atcgattcaa attcgatatg        60
     acgaatcgat tcaccaaatt aatcgaatcc tttgaatcga tgttttcgga ccgattcgat       120
     tttcaagttt gtttcaaaat tacaaaatca agcactcaaa ataatacaaa atgctaatgg       180
     attcaatttt tgattccaac tattgaatcg tctctcggaa atgaaattac aacattaaac       240
     acgtcaaggt taattcaaag taaggctgat tatttaacaa tttattagag gagtctaata       300
     actttcacca tgttgaatcg aaacaaaaca tcgaatagag aaaatcgatt cactcgattt       360
     tgagtgcatt taacatcgat tcaaaaaatc gattaatcgg aacaaaaaca tcgattttcg       420
     gaacatcgat tcaaaatcgc ccatcgcta                                         449
//
ID   hAT-N6_AAe  repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   04-JAN-2019 (Rel. 26.01, Created)
DT   04-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-439
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-439
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 145-145 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 439 BP; 167 A; 75 C; 58 G; 139 T; 0 other;
     tagcgttggg caaaattgtc tataacatcg atgttactga atcgattcac atttgaactg        60
     ctgaatcgat tcaccgattt aatcgaatct cttgaatcga tgtttttgaa tcgattcgaa       120
     tcgaattcaa atttaaaata tagtttgaaa tgagaccaaa tgcaattaca ttcaatttta       180
     atatacctca attaaatcag ttctgaaact caatagaaca gatttactat tgcaaaaggc       240
     ttattaaaaa tttgatttat ttttcatcat gccattaaga aatattcata attttcaaca       300
     aaatgaatcg aatcaaaaaa tcgaataaag agaatcgatt cactcgattt cagatgcccc       360
     aaacatcgat tcaaaaaatc gattaatcgg aatgaaaaca tcgattttcg gaacatcgat       420
     tcaaaatcgc ccatcgcta                                                    439
//
ID   hAT-N6_AP   repbase;    DNA;    INV; 588 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_AP.
XX
NM   hAT-N6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-588
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2106-2106 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 588 BP; 180 A; 83 C; 93 G; 232 T; 0 other;
     tagggcagag gacttgtagc atttgcatat tttttttgca cagccacaaa aatagcagag        60
     tgcgaaacaa atacgtttca tgcttccaca aagctagttt tgaaatttta ttgtgcatat       120
     aaatgcatat tttacgtttt tttggtttgt agggcatatt ttacactttt atacgctatt       180
     ttatattttt tgagacatat tttacttgaa tcgatttttt ccacagcgac atttttattt       240
     caaacaatac agtcaaaatg tttggataaa aatttattta tttttaattt ttgtcgttta       300
     atatggtttt tgactgtgct cgggcacacg tttttcttag aagcgataac gattttaacg       360
     taaactatac ctacgacatc accaccacag atacgtgtgt acaccatgcg ggcttttatt       420
     cgattaggat aaataaataa taatgttaat gtattatgta tttattattt aaataaaaag       480
     gctaaaaaaa attttaagtg catattttaa ttgcatatta tggggttttt tagtgcataa       540
     gtgcttgcat atttagagct tttttagagc tacaagtcct ctgcccta                    588
//
ID   hAT-N6_BTa  repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   29-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-311
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 653-653 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 311 BP; 98 A; 53 C; 74 G; 86 T; 0 other;
     tagagtccct ttatactgag agtcaagaca atgtgaatcc atttctgatt ggttcccgta        60
     ttttaggcct tcacagtgtc acaaacggga ataaagatta cattttcacc gattgcaaag       120
     attataatct ggaatggacc agggaattac gggttcggca aggaacaaac ggaatgagag       180
     aaggaacgga gaaaggaatt tgagaatggg ccgatcaaag attacgaaaa acgttcaatt       240
     tctgtaatct ttattcccgt ttgtgactcc atgaggggtg ttgtcttgac tctcagtata       300
     aagggactct a                                                            311
//
ID   hAT-N6_DEl  repbase;    DNA;    INV; 472 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; hAT-N6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-472
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4027-4027 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~84% identical to consensus.
XX
SQ   Sequence 472 BP; 145 A; 75 C; 87 G; 164 T; 1 other;
     tagggttggt aaaacaatcg atagcactat cgatactatc gatggtcgaa caatttagca        60
     aacatcgatg gtttgggctc accatcgata ctatcgctct ataaaaataa atttktatta       120
     tggtatattt gaagaatatt tggagtatat tgcggtatat ttctgggaac ttgctaattt       180
     tcaactttca ggtcacactg catttccaaa aggttcgagg taggctaaga cagttggcct       240
     gcagaccatg gggaagcgtt atatgacaat tccattttta aagttgatgt aaatatgaat       300
     tcgttataat ttgctttgtt aatcagctaa aaattaaaaa tttggatttg tttttattga       360
     tatttcgttt atttttctga ggctgaacaa ttttcgatac tatcgatagt atggccacca       420
     tcgatagcca aaactatcga tagtgcacac tatcgatgtt ttaccaaccc ta               472
//
ID   hAT-N6_DTa  repbase;    DNA;    INV; 648 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   30-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-648
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6147-6147 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 648 BP; 239 A; 94 C; 78 G; 237 T; 0 other;
     cagggaccgt aaataatgat tatcgatgta tttttcaagc aaaaaaatca tccacttgga        60
     aaagccgtac aaacaaacga attataccaa tcggctacta tttgtgtgct ctatccatat       120
     ccgcaatgat cttttacttc ttgattttta tacattttac tccattttaa taattatttg       180
     ttgagttttt ttcaatcgct caaagaataa ttattattat tgtgagcaaa aaaaatatcg       240
     atcaaaaaat aatgattatt ttttgagcgt tattttttcg ctcaaaatat cgctcaaagt       300
     gggatatctc ctttctcagt agtttctttg gaaaaatgtt ttcgcagcat tataaagtga       360
     acctcgacga ccccacaaaa cctcattttt agatttgaaa aaaaagttta aaaaataatt       420
     ttttatatat atggaagagc gatattttga gcgaaaaaat aacgctcaaa aaataatcat       480
     tattttttaa tcgatatttt tttcgctcac aataataata attattcttt gagcgattga       540
     aaaaaactca acaagtaatt attaaaatgg agttcaattt ataaaaatca ataaataatc       600
     attaaatatt gatttttatt atatcactta taatgattac ggtccctg                    648
//
ID   hAT-N6_LMi  repbase;    DNA;    INV; 1773 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1773
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3064-3064 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1773 BP; 590 A; 311 C; 339 G; 532 T; 1 other;
     cagtgttgcc agacgtaggg aattttccct acacgtaggt acttttaagc attaaaatca        60
     tgtagggaat tttcatccaa aagtccacga cgcgtaggta ctttggtaaa attttacaat       120
     cgccgacaca ggcctagcgg gtaatgttgg caacagtcaa cacgcgggaa tgaagccgac       180
     aaatggtggc gaatttgaag tagccaatga tattttagac ggcgtagtgt tttctgttca       240
     tagtaaacaa tattaatttg aaaacttagt ttcagacaca ttaaaactga tgcgaaatat       300
     gatgatttca aagtatatca gtggaatggg gatcggtttg gaaatagtgt tagaaaatgt       360
     cagccaagaa aaattcattg tttccatgaa cgaaagacgt tatattacct tgactagact       420
     gttatttatt tacgtcagga cgatatacta gttagtattt gtaagtgaga agatgttgac       480
     aagaaaacgc taaaacattt gcgacagcca actttataat gaacaaaacg ctagatattc       540
     gttgtcaaca tagcattact ctttgaaaat cattacttta cagaaagtga aaaggcaaac       600
     ctcttaaagt tatctactgt acagttttgg gacaaagtgt cacagtgcaa gaactttaat       660
     gacattaaac agtttcaaaa tataggtatg ttagctaaca ttgtgctttg tttgccacat       720
     tccaatgctg cagttgaaag aattttttca atggtgacag atattaaggc caaacaacga       780
     aacagaattg gtacagacac tttagaagca ttagtgagag tgaaattcga catgaagaat       840
     caaggaaaat attgttgcga ttatgtcatt ccaaaagaca tgtactactg tttacttcaa       900
     acaacatatt ggtgaaactt caaatgcaca acttctacta caacagtgtc cacagtgaga       960
     catatgtgga tatcagcagc gaccagatgt aaacggttga ttccatagtc acgggtgtga      1020
     aacatggact gtcagaaatt gactttgaaa taatcttaag atatcccttt caaaatttcg      1080
     tcttttaata tatataattt aaaaggaaat taattatatt attaagtcta aatattcatt      1140
     ttttgtaatt gctgaaaaca tatttttaag caaaaaccgt gtaacaggtg tgacaaaatt      1200
     gagaagggaa aaatctgtgt aattatattt tgttactgta ttcacatgcc tgactctttg      1260
     tgactttctg amccttggct catttcatat ggaatgtgcc agttacccgg attttaaatt      1320
     tgtgacagca aaatagcact cagtcgcgaa ataaaagtcg ctgctgcaca tcgatccaga      1380
     aatggattta taaaaaaaac aaactatttt atattggtga gtaattacga cattcaacct      1440
     acattaagta ctaacctatt ctgaaacgtc tttattcctt tatatactgc tgaagttccc      1500
     gcccccaggc acatttctcc acaaaacaaa aaagccatca cggagggagc gtcttcatac      1560
     ataaaactat tttttttgtt gaaatcagtt tgaggtatga tgccacgccc ccctccaggc      1620
     cagagtcctg gattcagtcc ctcccagacc caaatcctgg ctacgcccct gatgtagggg      1680
     ctttaatgag gtggtaggga gaaagtaggg aaaacgtagg tacatttttg tgagactgta      1740
     ggtattttct ctctctgcca tctggcaaca ctg                                   1773
//
ID   hAT-N6_RPr  repbase;    DNA;    INV; 886 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-886
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3347-3347 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 886 BP; 290 A; 164 C; 190 G; 241 T; 1 other;
     cagtggttcc caacgggggc ggtaccgccc accggtgggc gctgaagaga tctagggggg        60
     cgtttttggt caaaggcaaa tttagggggc gttgaggact agccgacgcc cccctaggga       120
     atggaaggag ccaaagcata agccgtgcgt aggtcatgac aagattgcca gcattgggaa       180
     gcacttaaag aaggttttac aaatagattt tgggatgtcc tcaacatgat cattccagat       240
     tgggtcctag aaccttcctc aaacctacaa acagcagaat tatcactgca ggaggagttg       300
     atagaactgt caacaaacga agagttaaaa ttgaaattaa aaaatggata tcaagaattt       360
     tggcttcaaa ggcaaagtcc agtattatat ccggccgtat gggctacaat cagaaagttt       420
     tttattgcat tcccatcgcc aaatttagcc gaaacagtat ttagcgtagt cttcaatcta       480
     ctagcaaaca aaagaaacag attgtcagta gtggaacgcg gtgacttaag attgcwgatg       540
     acaaaaatgg caccaaatat cgaaaaatta gtgtcattac accagactca gccctctcac       600
     taataatatt acatctattt ttttagtaat atatatttct taatcaaatt ttgagcaata       660
     caccaatatt gttaatatct tctaataaaa taattttcaa aatctttctt gtttttcacc       720
     caagacccga gcgctatcga atcattcttt gaaaaagttg actacgaccc aataaagttg       780
     ggaacctatg gattacagtt agattattgt tttcaagaag gggagctggt aagtttattt       840
     ttttctgaaa agggggcggt agaccaaaaa aggttgggaa tcactg                      886
//
ID   hAT-N7_AAe  repbase;    DNA;    INV; 1156 BP.
XX
AC   .
XX
DT   28-JAN-2019 (Rel. 26.01, Created)
DT   28-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1156
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1156
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 129-129 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1156 BP; 369 A; 192 C; 197 G; 398 T; 0 other;
     cagtgccgta gcgtgctatt ggccaggttg gcactcgcca agggcgccag gctatagggg        60
     gcgccaaaat gggaaatttt tggagataca catttagtga ccggattttt aggagatatc       120
     tataaaaatc actaaataat atattttgat tatagttctc catagtaatc ataaatcagc       180
     ttatacacgg tgcctatgtt aaaacatcca taaatttaga gtctattaac tgatacctaa       240
     ttaaaatagt agaatttcac agaattgttg gaaaggttct caaccaactc gtgacataat       300
     ttcctcaaaa aaatcttgga ccttttacaa tgtttttaca gaatatcagg acaaacaatt       360
     tcattgaacc taaacgaaag ttttgattga atccagggcg caataatcac agaatcatca       420
     gagaattatg taacattggg attagagcaa gagtgaaaac cattggaatg ggatattttt       480
     tgtaataact gaaattttgt tttgtttctc caaaacaatg atctggatga tgaacgtttg       540
     agtccgtaca gaacttttcg taacattgat tgacaacatt tgctattaaa ttattttttt       600
     gctttttcct tatgaaactt atagaggata ccttggtaag atttctttag aaatcttctt       660
     ttgatctctt caactatttc atgaaaacaa aacataaact tttttacaca aagtcaaaat       720
     tttaaacttt aaacacaaag cctaaatttt aaactttttt acacgactta actcttctta       780
     tttttaaaaa taattattgt atgtttgata tagttttcct tcatgtttga cgtttctcat       840
     taacaccatc tacaagtctt gctgcacatg aacgtatttc gtgcaactta gccaccagat       900
     gataattgtg tgaagtggac gatggatttc aaaggacact gttctaaatg tgacgtctgt       960
     ttttttgtgg ttgaatttat ttgatcttta tcatgacaat ttttttttaa atttcgatgg      1020
     acaattctta caggaaacgc cctattattt taagaagtgt ccttgaaaat tttctggaat      1080
     ttcacgtcaa cttgtaaaaa aggggcgccc aaatggcggt ttgccaaggg cgccacgagg      1140
     ccatgctacg gctctg                                                      1156
//
ID   hAT-N7_AP   repbase;    DNA;    INV; 647 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_AP.
XX
NM   hAT-N7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-647
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2107-2107 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 647 BP; 219 A; 88 C; 97 G; 243 T; 0 other;
     gggctcggaa gttgtaggaa ttgcatattt ttctgtatga tcacaattta tagcagacct        60
     agctagaaat ttgaagtata caatcgcgag ttgaaaaatt gaaaattgaa aatgcatatt       120
     ttgcatattt taccaatttt agctaaaaaa gcgcatattt cattgatttt atacgcatat       180
     tatgcatatt ttatattttt ctaaaaaaat tgattttttt ctttcttaac ctgtatattt       240
     caactaatat tgaatataaa actcaaaatt atcaacgaag gtatttattg tcatcgccat       300
     agtcaattac ggagttaata acagtgatat tgtgacacgc atttagtcta tcatgctagt       360
     atgccgaaat acttatttgt agggctcgga agttgtagga attgcatatt gttctgtatg       420
     atctcaattt atagcagacc tagctaatta gatagaaata gaaatttgaa gtaggtatac       480
     aattgcgagt taaaaaaatt gaaaattgaa aatgcatatt tcgccaattt tagctaaaaa       540
     agtgcatatt tcattgattt tatacgcata tttaacattt ttaatgcata ttttgcaatt       600
     ttttcgtgca tattttacat tttttagctc ctacaacttc cgagccc                     647
//
ID   hAT-N7_BTa  repbase;    DNA;    INV; 1539 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   29-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1539
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 654-654 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 1539 BP; 449 A; 338 C; 337 G; 414 T; 1 other;
     caggctcgga ctggccataa ggccaatctg ccattggcag atacgccccc ttggcgcgcc        60
     aaaaacgcgc ccctctgaca gatagcaaaa taagaagaga aaaaaaatta cgaccgagaa       120
     tatatgcgga aaatttctta aatgaacgga agaagagaga gttaggagtg aagagaggtg       180
     cttttacgca tagtggtgaa cagaggtcca agaactactt tctgaagcgt aaacactttt       240
     ctgtgaaatt ttcacctttt tgttgacata caggcgcttt atcatccccc tccttcattc       300
     gctatgtgta actcccttag aagcgatggt cggttcgatt tttagacata cgcacccttt       360
     atagacctct tgagagacct ttaaacatat ttcttccttt tcaaaatgac tattgatttg       420
     gacataccat agcatatctc gggcaaactt aaccttaatt tatctcgaaa ttcaaaagta       480
     agagacatct aaagtgtaaa cgcgatacaa ctattctcgc aagatggatg tccacattgc       540
     atatgaaaaa tgtaagacgc gatggcgtga gtcgtgaact cgcaatgctc tgctctatgc       600
     tactagtttg aagcaccatt acgaataaga caaacggaaa caaacacaat atggaaataa       660
     agcgagggaa aggatgcgcg ttaacgacgg cgcagagata caactattcg tacttgatgg       720
     acgtccgtgc tgcatctgaa aaattgaagg cgcgatgacg cgaagcgtga gctctcaatg       780
     ctctgctata tgctgccaat gaggtgtcgc tcagattcgg gagaaaagtt aaaaaagagg       840
     cccgaacaca tctctcctac cttcggctgt gttactcacg tagtgcttga agcaccatta       900
     cgaataagac aaacgcaaac aaacacaata tggaaataga gcgagggaaa ggatgcgcgt       960
     taacgacggc gcagagatac aactattcgt acttgatgga cgtccgtgct gcatctgaaa      1020
     aattgaaggc gcgatgacgc gaagcgtgag ctctcaatgc tctgctatat gctgccaatg      1080
     aggtgtcgct cagattcggg agaaaagtta aaaaagaggc ccgaatacgt ctttcctgtc      1140
     ttcggctgtg ttgatactcg ttctttcttc ttttttcagg ttcttgtctg attctttttt      1200
     aggatggatt tkcagaccca cgtcttaagc tcgtgtaaac cgcagcactg gctcggttct      1260
     tttggaaata atggtgcttg gatgcgtcta gtggctttaa ttttttatgt tttctttaat      1320
     ttcagaagtc tgtcggtcac ttcaatacgt tcaattttgc aatttttact ctgtacgatt      1380
     aataaacttt gaacctgaaa atagcgtaaa cttgtgctgc tttgccaaaa ttttctgaac      1440
     ccctctccac gaaggggatg ccccaccagg aaatatcaca ttacgcccct ttaaccagcc      1500
     aagggtctac gccctcagat gcgagccagt ccgaccctg                             1539
//
ID   hAT-N7_DTa  repbase;    DNA;    INV; 1144 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1144
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6148-6148 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 1144 BP; 380 A; 193 C; 198 G; 361 T; 12 other;
     cagagctcgt aaataactgt cgacactttc aatatgttcg acaaataaca cttatttast        60
     gacacattgg gaaaattstc agaacgaaac agtttaattt ctgttttcag ttttttctgt       120
     ctttgctcaa cagaaaacag tttgttttgt gtcaaatgtg tttctgtttt ccagagacag       180
     ttattctggg acagttattc atatgtgtct cagtgtcaaa cagtaaaagt tgaaaacaaa       240
     aatttggtgg cacaagtaaa tmatcttcct ctgagatcga tttcaatgag catcgtgaat       300
     tgccgtcgac aagtcaccca tgcgctgctg aggaakttac ccttttctct gaatttttag       360
     atggtgtcca gtcattatca caaacaaagg aagatgcttc gcgtgaacca ctatcaaaaa       420
     tgtatgcaga tgtgkagagt tttgacatga ctttcagacg tttaccattg aactccaata       480
     tattgcagtt ttatgatgac ctgaagatgc aatcgccgta tttaagtgct cttgcccggg       540
     tagtgctggc tacaccagcc acacaggtta ctgtggaaag ggcattttcc gcactgcatt       600
     atgtattaaa tgagaaacga agctctctta gtgcgcaaaa cataaattcg cttttagttk       660
     tgaagctaaa cgccgaataa agtttattcg ataaattggt caaacatcaa attttcatat       720
     acamtcakga acaaattttt acaaaataaa ttattattcg gcaatacgaa gtttacatat       780
     atacgctaaa accatatcac gcataaamag tgtatttata taactacata tatggaaaag       840
     acttaaaatt tttaagttag aaataagcas wcaatccaaa aagacactta ttctgagaca       900
     gttgtaggtt ttgatcattc aaaaacactt attcwgtgag gtgaaagcaa aagtctccct       960
     ttttttctgt tattgagaga cagaaataaa gtttgtgtca gccgaaatca gtcaacagaa      1020
     aacactttaa aagaaaaaat aactgttttc tgtccgagac tgacagaaaa ttttagattt      1080
     tttctgtttt gtgagtaaca agacagtttc agaaataagt gttaacagtt atttacgagc      1140
     tctg                                                                   1144
//
ID   hAT-N7_LMi  repbase;    DNA;    INV; 1683 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.11, Created)
DT   06-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1683
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3065-3065 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1683 BP; 484 A; 318 C; 375 G; 505 T; 1 other;
     tagggatggg aaaaaccgac cggttaaaac cgataccggt attttagttt tgaataaccg        60
     kttttttcgg tatttatttg gtgtcggttg taaccggttt tttttagtta ttgccaagaa       120
     ccgggtaaaa aaaccggtac gactacttcc tgtagtagtg gttcaaaatg tgttttttgt       180
     aaataattaa aaaaaattaa aactagtaga ccctaatatt tagggctatt cctaaaattt       240
     ccactgctgt gaaatattag gtcatcgcag aaactaagaa aagcgatcag tgataattta       300
     agaacaatcc cggcagtcag aaacgcgcaa caaacgcgtg gcataagaac ttaagaactg       360
     gtgcagctat tgaggcatcg atgcacctgt tgccgtgtgg cgtggcctat tagacgacgc       420
     gcgtgcaccg gcagtgtacg agacttgcct ccgtctggtc atgcggcagt tccttgctgt       480
     cgtcgccaga catcggttgt gtcttaaatg gcaccatccc gagtgtggaa gtacttcacg       540
     aagtacggta gcagtgaggt acaatgctcc atttgcttta aaaagctgaa aacgggtgga       600
     ggtactacaa acatgctatg tcatttaagg agaaagcatc caaaatgttc cttggaagag       660
     aaggtaaatt cgattcatat acctattatg taagtgatgt actctaagct tggaatacta       720
     acttttaatg tattatcata ttgttatgct aacaagtttt attaatgtga ttccttgaaa       780
     gcgaggggct tttttaataa ccaatatggg tttaggtaac attgatcatg tggtgcctcg       840
     cgaggtagcc gtgcggtctg aggctccatg tcacggactg cgcggctgct ccagtcggag       900
     gttcgagtcc tccctcctcc ctcggtcatg gatgtatatg ttgtccttag cgtaagttag       960
     tttaagttag attaagtagt ttgtaagtct agggaccgat gacctaagca tttaggtctc      1020
     ataagaactc acacccattt gaacattctt tgatcatgtg gtacagagct ttcctagttc      1080
     aatttgcgta aatttacact gacaacaatc atactgttag tcggaactgt gactttattt      1140
     ttcgaaatac ttctgcagca ctgattgaag tttatttact gactgtaact tatatatatt      1200
     gtgtatataa cgagatattc gtatgcgctg gctcacaagt ccaacttacg gagtggttgg      1260
     ctcaatattc gcaactgccg gatggaaata ctaggccagt aaatctgtat gcttcgtata      1320
     tcgtcttcta cggactcctg gctaggctta cacacactca agaaggcgta gtattgggag      1380
     gggatcttgc aaaatatgga aagactagtg atttgtcgta taacgtaaat ttacctaaat      1440
     tttaactaaa tttcgtaagt ttcggtttcg gccgaaacta gaagaaccga cgattacggt      1500
     ttctgtttcg gccgcaaaat atgtttcgtt cgaactctac tggaaataat agcaataaaa      1560
     accgaaaacc ggttatttaa aaaaccggtt atcttgagca atttttacgg tgcggttaaa      1620
     ctggagatga aaagaaccgg tataaccgaa aaccggttgt ttcagcgata accgccatcc      1680
     cta                                                                    1683
//
ID   hAT-N7_RPr  repbase;    DNA;    INV; 1097 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1097
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3348-3348 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~76% identical to the consensus. Both termini are not determined.
XX
SQ   Sequence 1097 BP; 403 A; 155 C; 170 G; 369 T; 0 other;
     tggtaggctc aggttcaatc tgggggcgtt ctataaaata aaggggcggt gaaagcatag        60
     aaaagctcta gaaaaaacaa aaaattaatg aagcctgaac agatcattaa gaagtattca       120
     ttaaaagcgg tcaacaaaat caaaagcatt ttcgttaaat gacagaattc aatagtttgt       180
     tgctcttctc atgaagtccg ttggttgtca aaaagtgcct gtttgaaatc gattttacct       240
     cttcattcag ggcttagaaa acaaagacga tgctttattt gattaactca aaaaattata       300
     tagcttattt aacagacata tttaacaaat ttaatgaaat aaatctgaca gcttcaagtt       360
     gaagaaatga attaattaaa caaaacaaaa agtgttattt ctgcttttgt gacaaaactt       420
     cttctgtata aacaaagttt aggacgaaga gaattcagcc agtttccaaa tttattaaag       480
     gtagaaaaaa acatgatgat gttatcattt ggatgctttc cattcagact tcaatcaaag       540
     ataagaagat attttaaaaa aattaatgaa ctttcctttt tcggcgttca aaattttttt       600
     ttttatttag caaaaactct aaatattgat agaattaaca gcaaatgagg aacttaaaat       660
     ttaaatccgg gtatcaacat tttatggcta cagaagcaga tatctgaact gtagttcaaa       720
     agttattaaa agctttccct tcaacttata gtggatttag tgcagtcaca actctattaa       780
     acaaaaaaga agcagattgc aaatagttga acgcggcgac taagattact tggccaaaat       840
     agagccggac attcgcagaa tataatataa ctgctccaag ttccccacta aatattttta       900
     atgtttacgt gcaatgaaaa ttctattttg ttattactca atcttgtttt aagtttgtaa       960
     ttctatgttg attttattaa ataatttagt tatttcatgt tccaaggtac ttatttgcaa      1020
     caaaatcttt caggttgttt gtgtaaatac ttaaattagt atctttgtct ttcttgtatg      1080
     ctcataaaag ataaatt                                                     1097
//
ID   hAT-N8_AAe  repbase;    DNA;    INV; 1397 BP.
XX
AC   .
XX
DT   29-JAN-2019 (Rel. 26.01, Created)
DT   29-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1397
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1397
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 130-130 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1397 BP; 431 A; 241 C; 240 G; 485 T; 0 other;
     taggctgacc atacgtaccg tatttaacgg gacagtaccg ttttcatccc ctcgacggac        60
     tgtcccgtcg ttttatggaa aatgctcgaa ttgtcccgta ttttaggaaa tggagtattg       120
     gcacataatt ttcaacacca gtaaaaaaat aaaaataaaa acataacaaa cagtttttag       180
     aaatatttca gagtttatcg tcttactcat ctattttcca agcaattatt agtttctcaa       240
     acagagttaa acttgatccg tacatgcttc tgcttaactt tttgcgtttc tttactcata       300
     tttatgccaa attttggtgg atttccaaaa tacggatctt cataagataa ttattcatat       360
     aatacctaaa atgaaaaaga acaactatgt gtttacttct gatacgcaat tgattggatt       420
     aactgtttta aaagtggata tttcaataaa gtaatgaaat attagaaaaa tttacgtttg       480
     aatttgaaaa attgaaaagt gtaacgattt tttaggaaat tcttaaaaaa cgctgccttt       540
     cggaaatcaa agaatgagct tcaaggttct taagtgattt ttattgaatc atacagacat       600
     gtagcttggg attgcataat ctggttctgc tactttccct cgaatggcgt tttcccgaat       660
     gtcgttctcc caacgccagt tctcagaacg ctagttcccc gaaaacaccg tttccccgaa       720
     tagctcagtt ctccgaaaag ttctaacact cataattgtc ataacctttt gcatttcaag       780
     gtggtgaaca atatgtattt agtcgagaat gatcaaatat ctccttcttt ggtagcttat       840
     cgaatttcta attcaacact atctcactac ccgagcagaa gcaaagttct gaccattaaa       900
     tcgagatatt gatttgattg acataagaga taaaagatct gaagataata tcaaaatttt       960
     attcctggaa cttctgagcc atagctaaat ttgatgttgg aagatctaag gaatagctcg      1020
     ctgatattgg tgagatctta taaaagctaa atatgatatg ctaatagtat tccaggagta      1080
     aattttagat attattttcg gatcttttat ctcttatatc tttcaagtta atatcacttt      1140
     tgtatgtcca tatcaaaatt tgctattatt tagctttttt cgcctgctcg ggtaaagact      1200
     attattgcac ttttttgagc tgcattgctt tacaagggaa cgggtcattc ggggaaatgg      1260
     cttcggagaa acgggccatt cggggaactg gaattcgggg aaaagaagca caatcgcata      1320
     atctatgtct tttaaaattg tcccgttttt gttttttatt tgtcccgttt ttatctggtt      1380
     ggcttatggt cagccta                                                     1397
//
ID   hAT-N8_AP   repbase;    DNA;    INV; 865 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_AP.
XX
NM   hAT-N8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-865
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2108-2108 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 865 BP; 272 A; 131 C; 119 G; 343 T; 0 other;
     gggagcggat gtttatgcat ttatcatatt ttttaataac atctaaatta atgcggagta        60
     agatagaaat ttgtttcatc acctaaagaa ttcaaattta ccaatttaat tttgcatatt       120
     tttgcatatt tgtccgattt ttacttgatt gatcatattt ttatattatg catcatgctt       180
     ttagtacata tttgaggttt ttcgtaatat actaatatag taatatatta acggactcgt       240
     cacgcgtaat taatagttca aaatatcccg acggcggcgg gaatggccgg ttttcacccg       300
     ccgcggcggg atgtatgggt ttattcaaga catttcgatt actgtgcctt atcgatattg       360
     tcccgcgaca aaaataaata taaaataccg ttgtcgccgg agtcggtatc gactatcgaa       420
     caatttcgct aattgcagtt gtgttctacg tttctatatt gtataaaatt gtatacctat       480
     ttatttaaaa atgccgaaaa ttaattccaa atcgtcgaga tttcataatt ttgttttaaa       540
     cattgattat ccagtgcaat gcccaattac tagatatgtt ttcaaatcat ttcatgttca       600
     cctagttagt acttggtttc taatatctac ccatgtatat tattttcaga ttaacaaaca       660
     attcaccaac agttcttttt aaagttttaa ttttatgaat aattatttta tacctatata       720
     tttttaattt ttaataaaca aaataaattt aaataaaaat tttattggtg catattttta       780
     ataaattcta agcatatttt tatacttttt agagcttaat tgcatgcata tttttaaatt       840
     ttttggagca taaacatccg ctccc                                             865
//
ID   hAT-N8_BTa  repbase;    DNA;    INV; 164 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-164
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 939-939 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 164 BP; 47 A; 36 C; 36 G; 45 T; 0 other;
     cagtggcgtg gcgtgctttg cgatatatcg attgatctgc catttaaacc tatggaaaag        60
     gatcgataaa cagggtgttc gcagcgaaca ccttaataat cgattcttta ccatagcttc       120
     aaatggggaa atatcgataa tcgatcattc acgcctcgcc actg                        164
//
ID   hAT-N8_DTa  repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-174
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6149-6149 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 174 BP; 47 A; 47 C; 42 G; 38 T; 0 other;
     cagcggtcgg cagcgcccta ttaagtgagc atagggtttt gttctgccgc cgcgctgctc        60
     gcacatgtat aacgtagaac agcggtctgc acacacacat cgatgagctg cccagtgcaa       120
     attactcaca caaatataaa acaaaatgtc aacgtatgtg tgtgccgacc gctg             174
//
ID   hAT-N8_LMi  repbase;    DNA;    INV; 2490 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.11, Created)
DT   06-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2490
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2929-2929 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 2490 BP; 725 A; 533 C; 487 G; 745 T; 0 other;
     tagagatggg caatctgctc ctgaactgat tcaaagagcc agatccttct aaggagtgag        60
     tgatggatga atccgaaaaa aagagtggta gttcatccga tccgaaaagt ccctctggtg       120
     acagcaatga gctgcataag caccccttgc cacatgcttc agaagtttcc taaacccctt       180
     gccacatgct tcagaagttt cctaagctac aaaataaatg tggtatagac catgtgcaag       240
     tataaaactg caaaaaatga gcgcctaaac acgtgcagcg cctccgcgct gcgagtcgag       300
     aatcggtgag tcgagagcgg caagtcacac aagcagcacg gttcagtgag cgcgcggctc       360
     ccgaatcccg ctggctcgct gctccgcacg actccggcga tcgaggcgat ccgaccgcca       420
     actgagtcgg tgagttagct ggttcaccgg ttcacctctc cccaccactc tcccgactcc       480
     gctcgcttgc ggagccgccc gtgtggcgcg ctgctcatta ttccccccac tcctctggcg       540
     aaccgcatgg tgccgaacaa agcgactccg cgcatctctc tgttctctca actcctgtgt       600
     tctgataaag cttgcagctc gcttacagaa acgatcatct gaagcaacag aaaccgtcat       660
     ataggcaaat gtcctattcc gaatagtact cgagatgaaa cgtatttatt taatgttaca       720
     tgttttttct taataacagg aaatctgcag tctgtagcaa aaacgcgtta cagtacaaaa       780
     ttaaactata taaaatttcc gcgaaaaaga tcctactcca tttttctcga agacttgtag       840
     tttgcatgaa gggagcaaga gagacaaagt cttgtgcaat gtgcattctc tgttgcttag       900
     attttgtaag cccatatcac gcagtttcct gacttgatag acaagtgtcc tgtaacaaat       960
     tatgcgtctt ttatgcatct acactatttt ggcacgttga aaacaatgac tatataatcg      1020
     aataacaaag aaaataacaa tgtgcattaa tgttttctat ctctgaaacc attcagtttc      1080
     gggaatgtgt ccatttgaaa tttttgctgc tggcgtcaaa tctttgacag taacaacaaa      1140
     cttgtttccc aagagagaga gaacactagg atgtcaaacg agatgtgtct aaaattacgt      1200
     ttctgagtaa aatatcttgc tataatgttt cattacgaat ttaatgtgtt tggtacagcg      1260
     ggatgtgtgt gtttgcaatt aaagataaaa tatattggga agcacttaaa aaaataattt      1320
     gacttgctct gtatagagaa tatataaaac tttgcacaaa taacaggtga aagggttgta      1380
     gttacaggaa ttaaaatata agatggaacg gaaatcgtac cagcaactgc aaaacttaga      1440
     atataggagc ccagaacgct acccctgtac tacgccgact gtaagagtat caccgcagtt      1500
     atttacctaa ttatttcttt cggtaagact ctcttcgaac ttaatcagtt gttgatggtt      1560
     tgtactcaca aaagaaaaac tcattgacga catagtcgaa agtatctgta ctcgtcgtcg      1620
     tattttcgaa gaatttggct ggagatcttc acagtctttt tttttcgtat ttgaagttat      1680
     gaatgaaata gtccacgaac attcctcgct ttgtaaattt aatggacatt actcttttga      1740
     cgccttattt cctaaattaa ataaaacttt attgcttact ctggagctat cattatttta      1800
     ctgtttatgg gtgccagact ttagtgaaac aggtgatcgg ttctagcggc catcttgtag      1860
     cgagaatctg tcgcgctcac gtaagacacc cggccgtgtc gccgaatgtc gctgcttgta      1920
     gctgccgtgt cgcgtcgctg aatatcgcgc gctgtcgctc gcttttgttg ctcacgtagc      1980
     acgcggcatt agtgcgcatg gctattttgc tgcggcagtt gccacgtcct gcatggacct      2040
     ctcgcgctat cacgtttcat tcaactcgct caaactcgca aactactcac tgtataaata      2100
     tggaactagt atcattttat tctgcaaaat attctatttt ttgaatgaaa gtatacaaat      2160
     ataaaaataa tatatttttt ctttttccaa ttatttcacc ttcaaaaata tttaaattct      2220
     gttataacat ttttaaattt taatgtaggt gtaactaaca aattttaatt ctcgaaacta      2280
     ctaaggactt acaataaaat tattactctt ctttcttctt tcacaatatg gccaaatcag      2340
     ataaaggtat agtgacaaaa aagcaatgtg acatcgtttt acgtttttta tcagttggtg      2400
     agtcggtgag ccatgaaaaa gaactagttc atcccagtga gtgactattt ctgatccgat      2460
     ctctgaaaag atcggttttg cccatctcta                                       2490
//
ID   hAT-N8_RPr  repbase;    DNA;    INV; 615 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposons: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-615
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3349-3349 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 8-bp long. ~92% identical to the consenus.
XX
SQ   Sequence 615 BP; 178 A; 116 C; 141 G; 180 T; 0 other;
     caggggtgtc aaactggcgg cccccgaggt aatttcttgt ggcccacgat gtactgaaat        60
     aaaatgaaaa tagaaaaagt ttttatgaag gaaatagcgc ttaggggagg atcgaggcaa       120
     tatcgtacac acaattccca gtttccgttt aactactgaa gacgagtata cacgtggccc       180
     cagggccttt cctggggggc ctgtgggctt gtataaacgc gctgacttag ttccagcgac       240
     gtttggaagc catatgtctg ccactctcag tggaattcca gaatgattcg gttttaaaag       300
     acgaagtagg aattcccaaa atatattctt atttaggtga gaaatatcca aaaatgtttg       360
     ctgtacaaat tttgtgttat ttttggagta cgtccttgtg tgagcaacta tttccgtcta       420
     tgaaattaaa taaaacggca tacagatcaa gattgactgg ataaacatct atctacctta       480
     atgaagattg tctgttctca gtctctgaat ccagatattg gaaaactagg aaaaatttgt       540
     aaatatgttg tggcccgcgt gaatcttgcc tgttgcacca agtggcccgt ggtttaattg       600
     agtttgacac ccctg                                                        615
//
ID   hAT-N9_AAe  repbase;    DNA;    INV; 1116 BP.
XX
AC   .
XX
DT   11-APR-2019 (Rel. 26.01, Created)
DT   11-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   Non-autonomous hAT DNA transposon from Aedes aegypti.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1116
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1116
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 131-131 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1116 BP; 372 A; 183 C; 189 G; 372 T; 0 other;
     cagtggcgca accaaggggg ggttttgggg gttaaatccc ccccccagag ccagaaaaaa        60
     atataataat taccaaatat atttttgaaa ttcaacacta cacatcgtac aactaagaac       120
     aacgaagtag taattaagtt tggtttgaat taaaattgtg aaattcaatg gttttcacag       180
     ttatattctc ctaaagtgtt ttctttttat ttgttgaccc ctgtagaatt tcaaaattac       240
     atgcgaaatt aatgaaattt tgttgccttt tatggaaaac aaactaaggg ctttatgtga       300
     gaagtttgtt aaacattcag atatatgggg acctttttaa cagaaaattg acgcagttcc       360
     cgaagcatca aaaacccttt gtcaaatttt acgactttca gagcatatga attcccgaag       420
     aagctattct tcggttttta tagattgaaa atctcagaat gcattaagca tctggtggaa       480
     gcatctctgc cttattgagc gttctaacat tttcgatatt ttgcaggtgt tgataatgaa       540
     ttacattgaa tttttaggaa aaaggatgca tgaaaattga gtctttttta gtgaaattgt       600
     tggtaaaatg tgattccgac ttgtcccatt tagataggac gaataagcgt cccactatag       660
     tagttgttca gtctggttac agagtcatcc taaaacaaag ttggtcgcat tgaaaatttt       720
     gaaatattac acatttttgt tcataaaatc ttcacaatga aagcaaaaca cctttctgac       780
     cctcaactca attttttgga tttacaagtc aagttctcca atgctgattt acttctgacc       840
     tactgcaaga atcgtggcaa tgagttctat tgtaaattgc tgcggtcatt gtagaaaaac       900
     ttgaaaacat atttaagcag taacacagat gaagagcgat tgaatcgtat catgcaaata       960
     tattgttata ttgttcaatc tatttttgat atatgtgtta aaaaggtgta atatacatga      1020
     atttctcgac taatttttaa acataactac gttttcaaaa ataaacctta aagtttacaa      1080
     aaccccccct agaaccaaat cctggttgcg ctactg                                1116
//
ID   hAT-N9_AP   repbase;    DNA;    INV; 589 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   hAT-type DNA transposon family: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_AP.
XX
NM   hAT-N9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-589
RA   Jurka J.;
RT   "hAT-type DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2109-2109 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 589 BP; 212 A; 60 C; 82 G; 235 T; 0 other;
     gggctaggga cttctaggag tttgcatgtt tttaaataat cattaaaaac atagctaagt        60
     aatatagaaa tttgtttcat agcaatgcga gtttatattt aaaatttata gttgcatatt       120
     ttgcatattt gaccattttt catttataag tgcatatttg acaatttttt tataatatat       180
     aggtgtaagt ttataattta ataaaaaaaa cctaatttta aatgtagata ttagtatgat       240
     ggttttattt atagaaaata aatattttaa aattagtgtt tgttttcctc gccgatcact       300
     cgtattgtta cttatcggta caccacacgc gtgattcact aaaactcgat gtaagaaaaa       360
     aaaatcggaa aagaaaatta tcaattattt gttaatatac aagattttta ttataaatta       420
     caatttaaaa ttttgaaaat attatctaga tattaaaata aaaaggtttt attcaatagg       480
     tactatgatt ttttttttta atgcatattt taatagcata tttagtgatt ctctagggca       540
     taagtgcatg catattttaa ggtttttaag ggcatgaagt ccctagccc                   589
//
ID   hAT-N9_BTa  repbase;    DNA;    INV; 436 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-436
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 866-866 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 436 BP; 115 A; 75 C; 104 G; 142 T; 0 other;
     cagtgttcga aactcacctt tgagttttag gagccatgtg gcgcatcaag cccgattttt        60
     aggcgccatt gaagattttt taggggccaa attgactttt tgcctatata ttacggcgca       120
     tttagtgaaa agttagacgc aagatgtttt cgtaacagaa ctagtaagta gctgtaactt       180
     ggggaagaca aaagcactaa gaatgaaatc gtgaagaata gaaaaagcaa gctttcactt       240
     gtagtgctga aaattctgag ttttttcaat tcaaatagat ttgtttttct ttctttatgt       300
     gacttcctgt gaaaatccag atttttaggg ggcaattttt aggggccacg ttggcgcaga       360
     gccttcattt tttaggcgcc atggccgatt ttttaggcgc atttggcgcg ttggcgcctg       420
     tgagtttcga acactg                                                       436
//
ID   hAT-N9_DTa  repbase;    DNA;    INV; 522 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-522
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6150-6150 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 522 BP; 183 A; 71 C; 83 G; 185 T; 0 other;
     cagggttcgg aaaataacac acactgtaaa aaacttgtgt tattaacatg ttaaatgtca        60
     aagtgttaag tcaaaaaaag ttattgactt gtgtgtaaaa aattgtatcc tacatatgtt       120
     agaaacataa ataacacaca catgtcattt gtgttattta cacgacgtgt tttttacaca       180
     gcgtgttttt aacacaatga gtttttgaca ttaaagtgtc agaattgtat gttgaactga       240
     aaagcacggt tttctagagt gtaagaattc atatatgctt tgaaatggtt aaaactaaca       300
     tataaatatc ttcgacttgt taatgtcagt gaaatgtaat tttcatttgt gttaaaaaca       360
     cagtgtgtaa aaaacacgtc gtgttaataa cacattgtgt aaaaaacaca agtgagctgt       420
     gtgtgctaac aattattttt cacattttaa cacttttgta tttgacacct gtaaaataca       480
     atttttcatg tttttaacat gtgtgtcaat ttccgaaccc tg                          522
//
ID   hAT-N9_LMi  repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-684
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3066-3066 (2014).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 684 BP; 204 A; 147 C; 109 G; 224 T; 0 other;
     cagtgtttcc caaccttttt gaatacgcga cccccttcca actaaaaata ttttggcgac        60
     cccccacccc ctccccgaac cataacacaa ctatgtgtgt aatttcaaag gcaacgaatt       120
     taattttctt ctgttgatac aactttcttg taaaaacaat aaaaatacag tattgtacat       180
     tataggataa ttttagtcca tttttctgaa tggaacacat cctattatta catgaattcc       240
     gacagaaaaa tatatgttgc ataacgaggt ttcgcattgc aggtaaagct cagaagcgaa       300
     ttatgctcgt tgagcaaggt cccactgtat agtcaatttg taaacaatcg aatttctcaa       360
     aattacttat tgtatcttgt aaatttagct atcgcctggt acctgaaaac agttttcagg       420
     cctttcgttt attcattgtt aacacggtgt atttattata aaacaatctt tgttctattc       480
     aactgagaat tgatgatcaa caaggaatcg cgtaatttta atataaaata catttcactt       540
     ttcttaggca tatgtttttg cattacggaa cccctagtat tcaggcatgc tcctggctgg       600
     ttgttttatg gtgcaactac ttcctcctgt gacggcgacc cccgagcaag actttgcgac       660
     ccccctgcag gttgaaaaac actg                                              684
//
ID   hAT-N9_RPr  repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   hAT DNA transposon: consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT-N9_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-432
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3350-3350 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 432 BP; 163 A; 66 C; 71 G; 132 T; 0 other;
     cagaggtcgc caaagtggtc tatatagacc cccaggggtc tatttaacaa aagtaggggt        60
     cgatctgagc cagggggtcg aaggaaaaac aatttcgaac ccaatatagc gaaccttgca       120
     aagaaacacc aggcacaccc atctcattaa ttaagaagca atactgtagt tactttactt       180
     atttataatt acttattatt taataaatat taaggtattt aaatttcaac attaagatat       240
     ttttcataaa actattgtta cacaatgtaa aattacttta ataaatgttt aaaatcataa       300
     aataaatgta caaacacagt acctaataga tagttttatt ttaattaact gaaaattact       360
     tttatggggg tcgatggaga tttcgaaaaa ttatataggg ggtccatgat caaaaaagtt       420
     tggcgacccc tg                                                           432
//
ID   HAT1_AG     repbase;    DNA;    INV; 3702 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   HAT1_AG is a hAT-like autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   Autonomous DNA transposon; HAT1_AG; HATN4_AG; hAT superfamily;
KW   transposase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3702
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "HAT1_AG: a family of autonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 58-58 (2003).
XX
DR   [1] (Consensus)
XX
CC   HAT1_AG is a young family of autonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily. HAT1_AG elements are less than 1%
CC   divergent
CC   from the consensus sequence. The genome harbors 6 HAT1_AG
CC   elements.
CC   HAT1_AG has imperfect 11-bp terminal inverted repeats (3
CC   mismatches).
CC   HAT1_AG encodes the 603-aa HAT1_AGp transposase (pos. 1473 -
CC   3284).
CC   The N-terminus of HAT1_AGp (pos. 10-50) is composed of the
CC   BED zinc finger.
XX
FH   Key           Location/Qualifiers
FT   CDS           1473..3281
FT                 /product="HAT1_AGp"
FT                 /translation="MMAPTNATTSPVWDHFSPVETGAKCLYCLKVFKYTKG
FT                 TTSNLKRHLNLVHKTVPYLKQKQPIPQTINIDDEAGPSAVNFQPSNQYFNS
FT                 NMSIQGYLKKPINSETKKVLDRMLLDLICKECLPFNLVESEIFKKFVYTLN
FT                 PNYIMPTRKSLSNALLPSVYNQEFEKAKEKLSTAKAIAITSDGWTNLNQIS
FT                 FFALTGHYIDENCKLSSILIECSEFENPHSGRNIANWIQGTLNKFDIEDKI
FT                 VAMVTDNASNMKAASTELNFCHIPCFAHTLNLIVRDAIKKSVLPVVEEVKR
FT                 VVMLFKKSPKASQMLADTQKKLNLDQLKMIQEVSTRWNSGYDMLNRFYKNK
FT                 IALLSCADSLKMKISLESHDWEAIEQIVRVLKYFYSATNIVSAQKYITISH
FT                 VGLLCNVLLTKTSQFRNDEDIAENIQNLVALLIEGLQNKLKIYRSNEQILK
FT                 SMILDPRIKQLGFQDDVEKFKNICESIISELLPLQKPAVEVEKVVKKVSKD
FT                 VDMLFGDLLKNKGAQNYKTPRQIAENELHQYLSVENIDLENDPLLWWKEHQ
FT                 VLYPSLYTLAMSTLCIPGTSVPCERLFSKAGQIYSEKRSRLAPKKLQEILF
FT                 IQQNA"
XX
SQ   Sequence 3702 BP; 1286 A; 637 C; 686 G; 1093 T; 0 other;
     tagagttgtg cctcaagaac cagaactgta cgattcattc aattcatcct aaagaacgaa        60
     cgacctacgt tcatctaatc aacgttcatc gattctttat aaattataat gtattgagtt       120
     gttcatgaaa ataacccggg taggaacccg tcgaaatgaa gaacgtccta gtacgccagg       180
     tcgttcattc cccccataca aatatgaacg tgaatcgtat gaccaggacg ttcacgaaaa       240
     gaacgtccta cccgtcgaaa taaagaacgt cctagcaagc caggtcgttc attcccccca       300
     ttcaaaatga acgtgaatcg tatgaccagg acgttcacga aaagaacgtc ctacccgtcg       360
     aaataaagaa cgtcctagca agtcaggtcg ttcatttttt cccatacaaa tatgaacgtg       420
     aatcgtatga ccaggtcgtt cattctcctg atacaaaaat gcgctgtccc acatgataga       480
     catgtgtcga tgaaacaaaa tcagcatact ttctcactca gcccaacaaa acatccgatc       540
     tggcattctg cactggcttt ctgcggagag cacagtacaa gataagagag cggatagaat       600
     gtttcgttga tctacatcgt tcactctctt tctgatcctc ggagacgatg ccgcttctgc       660
     aatatgcgct ctctttttct tcccgctgca atactttcag ctgatagtta ccgagagaac       720
     gatcacagag atagagagtc aaaaaaatga cgaggacggg gggtggtatg tgggatgagt       780
     ttttttacct acttgtgagc gaggtacagt caaagttcaa taattgaacg aaattttggt       840
     ttgtatattt ttcgatggat atttgatagt aggttgatag atcaactaaa aagcatgcct       900
     ttatattagt gaatctaatt tcatagaaaa tcgcaaaact gtcgcctata atgaaaaaaa       960
     aacttcattt attttgtgca ggaaagaacg tgaaaattta tcaccaaacg tgacactaac      1020
     caaacagtga gctgccaatc gaagttcaat tagtgagttt gaactgtact agtcgttttg      1080
     tttgagagag aaatgacctt ctcgcgcttt gaggaagaga ggaaaattac actaatacgt      1140
     ttatggtcac taaatccata tgataaatac atagatcacg tgtgttcggt tcgttgttgt      1200
     ataggtgatt ttgaccgtta tttttgaata cgttcgattt cttcaatgtg ttgtaggctt      1260
     atggtaataa acattgctga aaccgtgatt gtattgataa attgatcttt gatatgccat      1320
     ttgttgtgat cttttgactt gtaaaccaca aattgatcta cgctccatcg aaataagtga      1380
     aaatttaata attgcacggc gatcaaaggt aacattagtc ttggtagtta aaaacaaaaa      1440
     cataaagtgt tgtatgaaac atttccacag atatgatggc tccaacaaac gcaacaacaa      1500
     gccctgtctg ggatcatttt agtccggtag aaactggcgc aaagtgcctt tattgtttaa      1560
     aggtgtttaa gtatactaaa ggaactactt cgaacttgaa gcggcatttg aatttagtgc      1620
     ataaaactgt gccgtattta aagcaaaagc aaccaattcc tcaaactatt aacatagacg      1680
     atgaagcggg accttctgct gtaaactttc agccatcaaa tcaatatttc aattcaaata      1740
     tgagcataca gggttatctg aagaaaccca ttaatagcga gactaaaaag gttttagata      1800
     gaatgttgct agatctaatt tgcaaagaat gtttgccatt taatttagta gaaagtgaaa      1860
     ttttcaaaaa attcgtttat acattaaatc cgaactatat tatgcctaca cgaaaaagtt      1920
     tatcaaacgc cctactacca agcgtatata atcaagaatt tgaaaaggct aaagagaaat      1980
     tatcgaccgc caaagctata gctattacgt cggatggatg gacaaacctg aaccaaataa      2040
     gtttttttgc cttaacaggt cattatatcg acgaaaattg caaacttagt tctattttga      2100
     tagaatgctc ggaatttgaa aatcctcata gtggtaggaa tatagctaat tggattcaag      2160
     gtaccttgaa caaatttgac atagaggata agattgttgc aatggttact gacaatgctt      2220
     ccaatatgaa agcggcatca actgagttga atttttgtca cataccatgt tttgcacata      2280
     cgttaaattt gattgttcga gatgctataa aaaaaagtgt gctaccagtt gtagaagagg      2340
     taaaaagagt agtaatgtta tttaagaaaa gtccaaaagc ctcacaaatg ctagctgata      2400
     cacaaaaaaa gctcaattta gatcaattga aaatgataca agaagtgtca acgcgatgga      2460
     attcggggta tgatatgctt aatcgatttt ataagaacaa aattgcatta ctctcctgtg      2520
     cagatagttt gaaaatgaaa atatctttag aatctcatga ttgggaagca attgaacaaa      2580
     ttgtgagggt tctaaaatat ttctattctg ctacaaatat tgtatccgcc caaaaataca      2640
     taaccatttc acacgtggga ttactatgca atgtgctgtt aaccaaaaca tcacagttta      2700
     gaaatgatga ggatatagca gaaaacattc aaaatttagt agctttgctc attgaaggtc      2760
     tacaaaacaa gctaaaaatt tatcgttcca atgagcagat acttaaatct atgatattag      2820
     atcctaggat taaacaactt ggctttcaag acgatgtgga aaaattcaaa aacatatgtg      2880
     aatcaattat atctgagctg cttccgttgc aaaagcccgc agtagaagtc gaaaaagtag      2940
     taaaaaaagt tagcaaggat gtggacatgc ttttcggcga tttattaaaa aacaagggag      3000
     ctcaaaacta caaaacacct agacaaatag ctgagaatga actacatcaa tatttaagcg      3060
     ttgaaaatat tgatttagaa aatgatccgc ttctttggtg gaaagaacat caagttcttt      3120
     atccatcatt gtatactctt gccatgagca ctttatgcat tcccggaacg tccgttccat      3180
     gtgaaaggct tttttctaaa gcgggacaga tatactctga aaaaagatct cgactagcgc      3240
     caaaaaaatt gcaggaaata ttgtttattc aacaaaatgc ataatcaaaa cgtcgttgca      3300
     aaatttgtaa catggagtat atgaaataat tgttttgtaa tgcacttttt gtaattaagt      3360
     aagacttgaa ttatctagat gtaagtgtta tttttgtaat ataaaaaatg aattcaaaat      3420
     ggtgttaaaa tgtgttggtt gccttaatca taatagatgc atcacttaat aacataatta      3480
     ggaatacacg agttttttag ttcagtgact aagaactgtt atgcttatta tatgaaactg      3540
     ttaacaaaca cccataatat gaaactatcg cgaaataaga tcgatttacc atactgtggt      3600
     tagttgacgt gaacgattga atcgcgattc acgctcagtt catgttaatg aaagaaccgg      3660
     taaattcacg ttcatggtaa tgaatcgaat tgcccaaccc ta                         3702
//
ID   hATm-1_AA   repbase;    DNA;    INV; 5665 BP.
XX
AC   .
XX
DT   30-OCT-2007 (Rel. 12.10, Created)
DT   31-OCT-2007 (Rel. 12.10, Last updated, Version 1)
XX
DE   hATm-1_AA, a family of autonomous hATm DNA transposons - a
DE   consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element;
KW   Autonomous DNA transposon; hAT superfamily; hATm group;
KW   hATm-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5665
RA   Kapitonov V.V. and Jurka J.;
RT   "hATm, a distinct group of hAT DNA transposons in animals.";
RL   Repbase Reports 7(10), 1046-1046 (2007).
XX
DR   [1] (Consensus)
XX
CC   hATm is a separate group of hAT DNA transposons. Significant
CC   identity between hATm and hAT transposases appears after PSI
CC   BLAST iterations. hATm transposons exist in genomes of different
CC   animals, including segmented worms (Helobdella robusta, leech),
CC   flatworms (Schmidtea mediterranea, freshwater planarian), insects
CC   (Aedes aegyptus, mosquito), and tunicate (Ciona savignyi sea
CC   squirt). All identified hATm transposons are characterized by
CC   8-bp target site duplications and conserved termini
CC   (5'-TAGGgtGgyccnnA). The planarian hAT-7_SM, hAT-8_SM and
CC   hAT-10_SM transposons also belong to the hATm group. Their
CC   putative classification as hAT transposons was not supported by
CC   significant similarity (BLAST and PSI-BLAST) to known hAT
CC   transposase proteins.
CC   hATm-1_AA is a young family of hATm autonomous DNA transposons
CC   identified in the mosquito genome. The consensus sequence was
CC   built based on multiple alignment of 20 copies that are ~2%
CC   divergent from the consensus. TIRs are 770-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1584..2229,2316..2401,2562..2767,2831..3630,
FT                 3696..4054)
FT                 /product="hATm-1_AAp"
FT                 /note="transposase."
FT                 /translation="MEDIRLVGKYLPLFPESANLPTYSEVFRKFMFHLRAE
FT                 KQKPRASAQLTTQALKTSWNKKHLNHLIDDVTVEQKILRYYETWKSLQKHI
FT                 LRMSAKETEKRNEFSHSLRNLFDIAKKYKPKTKEEKKASQYLQEQREQSTL
FT                 PTTTETGPTETISCSDFEEEANLQATEETNPPTSEQKEASLQQKKTLTGSD
FT                 FESSSQTQSESFTSIGTIGEDLQIPGPSKSSSTPKPQLKNVITVDVAAALD
FT                 RCKVNLTVHWDSKLLPSILSSKAIPKTERLAIVVSGDGIRKLLAVPPIQNS
FT                 TGIEQAVAVYNAVVDWGLEDRVMFTSFDTTASNTGRKKGACQHLNNMFKRQ
FT                 LIGLPCRHHIHELLVGKAFKVLQFETAQSPNVEIFRRFQMEWHRLEKSSYH
FT                 SGLNDAFVKSSITDNERVILLEFFERQLIEHHHREDYREVIQLTIIFLGGK
FT                 INENFKIRAPGAFHNARWMAKIIYSLKMFLYRYTFALPKATKDGLARFNVF
FT                 IVKVYLRNWFLSSCAAMSANNDLNLLKSLKIYEAVDKEIAEAVHKGFLNHL
FT                 QYLDSNLIGLCLFDEKLDVADKKRIMEALHTSDTQKIVPAKSIIESNDVST
FT                 LELHSFVQGCQDTKKLFHALEIPESLLETDITQWNCKKEYEDAKRRIQSLE
FT                 VVNDNAERGIALIKTYNSKLSTDENQKQFILQLVEEHRKMYKSPNKSDVI"
XX
SQ   Sequence 5665 BP; 1939 A; 966 C; 1012 G; 1748 T; 0 other;
     tagggtgcca atgaaaatcg atttttcgaa tttcaaaaaa aggtagtgct caaaagtttt        60
     gtctcctcga aaaaagtccc catgcaaaat ttgagctcaa tcggacttca ttaagtggac       120
     ccccaaagcg gtcaaagttt ggcttttttg acccatgaaa aatctccaaa gggggggggg       180
     gtacatgaaa tttccgaaat cgaaattttt tttttgatgc cagatgtctt agaaatgcat       240
     gaaacgtcga gatctggtgt tatttggaaa attttttttt ttgaaaaaat cgaccttttg       300
     ggacttagta aatttttgag ttgggggagt gaattgaatt tgaaatgaac gatttgaatt       360
     caattgctga gaaattcaag gcaatagtat tgaaacatat cctatatcat tgttggccac       420
     tgaaagcata ttatatgtga tatttcatta gggtggttca tttactttcc attagggtgg       480
     tcctttttgt taaaaaataa aaaaaataaa aaatagaatt ttaattgaat attgaagaca       540
     atagtattgg aacatctctc acattatcgt aagccatttt ctacatttaa tatgtggtat       600
     tttattaggg tggttcactt attttccata agggtgggcc tttctgtcga aaaatcataa       660
     tttgaatggg atattaaaaa caatagtatt ttatcacctc tttcatcatc gtaggccatt       720
     tccttcatta gattcgtgat atttcattgg gaaggctcac ttatattcca ttacggtggt       780
     cctttaaaaa aattgagaat ttgaatggaa tagtaaatac aagagtaatt aaacatctcc       840
     tatgtcatcg taggccactg ttaacatata atatgtgata tttcattagg gctattgtcc       900
     tcagttttgc ataagggtga tcatttaatt tgtaaattaa aaaaaaatat tctcaacaga       960
     tctaacaaat caactttgtt tgtatagttt tgaatcatga ttctttattg gcatgcaact      1020
     cttcgttaag atattttcat taaggttttc ttttgaatag ttaaaataaa acgttccaat      1080
     aacaataatc agtgaattca gtgaagcaca actctaactg ccataatcaa aatacagata      1140
     aaaaaggaat gaaataattt ttgacgtatt caaattatga caatagcttg atgggcgacg      1200
     atgaagggca acaaaagtgt ttagtttata ttttcaaaag agattctcag ccttgggctc      1260
     cttcattccc gaaacaaaag tacgttgcct tctgcttgct atagtacacg cgattcggtt      1320
     gtgacaacgt aggcaattcc agttttaaca atcagttctc gtttattctt caaagatgta      1380
     gctaaaagct cctgcttttt ctacctacat agaatataag ttatacctaa agtgaagaaa      1440
     atcaaatcgg tagatttttg tctataccta agcgtgttca aaatagaagc tccaaataaa      1500
     ttgtatttca gtggtgaata agaaaagcaa ttcgtgtgtc aaaaaaatta tatcaaggcg      1560
     tgtgcaagcg ttttttgtta aaaatggagg atattcggct agttggaaaa tatctacctt      1620
     tgttccccga atctgcaaat ttgccgacat acagtgaagt attccggaaa ttcatgtttc      1680
     atttgcgagc agagaagcaa aagcctagag ctagcgccca gttaacaaca caagctttga      1740
     agacatcatg gaacaaaaag catttgaacc atttgatcga cgacgtgaca gtggaacaaa      1800
     aaatcttgcg atactatgaa acttggaaaa gcttgcagaa gcacatacta aggatgtcgg      1860
     cgaaagaaac tgaaaagaga aatgaattct ctcattcatt gcggaacctt ttcgacatcg      1920
     cgaagaagta taaaccaaaa actaaagagg agaaaaaagc atctcagtat ttgcaagaac      1980
     aacgagaaca atccactctt ccaacaacaa ctgagactgg tccaacggaa actatctcat      2040
     gtagtgattt tgaggaggaa gctaatctac aggcaacaga agagactaat ccgccaacta      2100
     gtgagcagaa agaagcaagt ctacagcaaa agaaaacatt gactggtagt gattttgagt      2160
     cctcatctca aacccagagt gagtccttta cttcgatcgg tactatcggc gaagatttac      2220
     agataccagg taagtgtgaa ttgaatacat tgcaaatatg ttttaaaatg tttttcatgg      2280
     attctaatat ttttgatttt tatattttct tctaggtcct tcaaaatcat cttcaactcc      2340
     taaaccacaa ttaaaaaacg ttattactgt cgatgtggct gctgctttgg accgctgcaa      2400
     agtgagtgat cgaaatgcgg tatttctaat ttcatctata gcgaaatctt tggggcacga      2460
     cgtttcaaca ttattgttga acaaggagtc cattagatat tcaagaaaaa aaaaatcgtg      2520
     agcaaaagca ccatgagctg aaaacaacat ttaagccaca ggttaactta acagttcact      2580
     gggattcaaa gctgcttcct agtatattgt cgtctaaagc catccccaaa actgaacgat      2640
     tggctatagt tgtatctggt gatggcatcc gtaagttgtt agctgttccc cccatccaaa      2700
     attcaacagg aatagaacaa gcagtagcag tttataatgc agttgtcgat tggggtcttg      2760
     aagacaggta agttttttta gcttcaattt tattattgat aatttctaaa atataacgtt      2820
     cgttttttag ggttatgttt acatcatttg ataccactgc atcaaacact ggtcgaaaga      2880
     aaggagcgtg tcaacatcta aacaatatgt ttaaaagaca gcttattgga cttccctgta      2940
     gacatcacat acacgagctg ttagttggca aggcattcaa ggtactgcaa tttgaaacag      3000
     cacaatctcc aaatgttgag atctttaggc ggtttcagat ggaatggcac cgcttagaaa      3060
     agagttcata ccattctggt ttgaatgatg cgttcgttaa atcatcaata acagacaacg      3120
     agagggtgat tctattagaa ttttttgagc gacaactaat agaacatcat caccgcgaag      3180
     attatcgtga agttattcag cttacgatta tattcttggg tggaaaaatt aatgaaaact      3240
     ttaaaataag agctcctggt gctttccata atgcaagatg gatggctaaa attatttatt      3300
     ctttaaaaat gttcctttac cgatacactt ttgcgttacc taaggcaact aaagatggat      3360
     tagcacgatt taatgtattc attgtgaaag tatatctaag aaactggttt ctttcttcgt      3420
     gtgctgcaat gtctgcaaac aatgacctca atttgttaaa atcgcttaaa atttacgagg      3480
     ctgttgacaa agaaattgcc gaagcagtac ataaagggtt cttgaatcat ctgcagtatt      3540
     tggatagcaa tctcatcgga ttgtgtttgt ttgacgaaaa gttggatgta gcagataaaa      3600
     aaagaattat ggaagcctta catacatcag gtaaatactt tgtttaattt gttgtaccga      3660
     gattattatt tttctaacaa tattttgatt ttcagatacc caaaaaattg tacctgctaa      3720
     atccataatc gaatcaaacg acgtttcaac actcgagcta cactcgtttg tacaaggatg      3780
     tcaggatact aaaaaattgt tccatgctct agagattccg gaatccttgt tggaaactga      3840
     tattacgcag tggaattgca aaaaagaata tgaagatgcc aaaagacgta ttcaaagttt      3900
     ggaagtagta aatgacaatg cggaacgagg tattgcatta attaaaacat ataattcgaa      3960
     attgtcaacc gatgaaaatc agaaacagtt cattttgcaa ttagtcgaag aacatcgaaa      4020
     aatgtataaa agtccaaaca aatcagatgt aatttaggaa atatatgcga tgtaatgtac      4080
     caaaaacaac caacatgata tttttttaat atcacaattc ctttcctctc cctttcgttg      4140
     cttaccttat tgctactaca accattgcaa aatctaacag ttccccatct taagggcccc      4200
     ggggttacag ttcagagcct tctcaccaat cactctgatt ttttttatct gagcttgcac      4260
     agatggtaca aaactgaatt ggaaaggtca ctgaggctca atgcttgatc tctgagatga      4320
     gtgcatctga aatcacgaag tagcaagcgg attttgtatg agacgaggac tccgaactgg      4380
     ttcagcttag tgaagtgttg cattccgaat gaaaatcacg caaaactttt caaaaggacc      4440
     tttctaacaa tgagaggctt tctagaaaac tcttttgttg ttaactaagt tacctttaca      4500
     tttttcgtcg aacattacgc aaatattatg tagtagtcca caccataatc tttcggtctg      4560
     tagatattaa ggttgaaatt tttacaatga caccataatt aaggaaagtg gacgagactt      4620
     ttgcgagaaa tcatggtttc aaactatacg aaaaatgatg caccctaatg gaaaatgaga      4680
     gaaactccct aatgaaatat gttaacagtg tcctacgatg atgtcgcata tcaaatggaa      4740
     ctagaggcgc atgaattcag aggaatttaa agcctctcta aacaaaaatg aagacaatgg      4800
     cctacgatta taaaagaggt tttaaaatac tattgtgcta aaaaaaagga tcaaattcaa      4860
     aatttcttga ttttttttat ttaattttcg gcaaacacca atggaaaata agtgagccac      4920
     cctaataaaa tatcacgaat ctaatgaagg aaatgcccta cgatgatgaa agaggtgata      4980
     aaatactatt gtttttaata tcccattcaa attatgattt ttcgacagaa aggcccaccc      5040
     taatggaaaa taagtgaacc accctaataa aataccacat attaaatgta gaaaatggct      5100
     tacgataatg tgagagatgt tccaatacta ttgtcttcaa tattcaatta aaattctttt      5160
     ttttttttaa tttttcaaca aaaaggacca ccctaatgga aagtaaatga accaccctaa      5220
     tgaaatatca catataatat gctttcagtg gccaacaatg atataggata cgtttcagta      5280
     ctattgcctt gaatttctca gcaattgaat tcaaatcgtt catttcaaat tcaattcact      5340
     cccccaactc aaaaatttac taagtcccaa aaggtcgatt ttttcaaaaa aaaaattttc      5400
     cagataacac cagatctcga cgtttcatgc atttctaaga catctggcat caaaaaaaaa      5460
     aaattcgatt tcggaaattt catgtacccc cccccttggg agatttttca tgggtcaaaa      5520
     aagccaaact ttgaccgctt tgggggtcca cttaatgaag tccgattgag ctcaaatttt      5580
     gcatggggac ttttttcgag gagacaaaac ttttgagcac tacctttttt tgaaattcga      5640
     aaaatcgatt ttcattggca cccta                                            5665
//
ID   hATm-1_CCo  repbase;    DNA;    INV; 3643 BP.
XX
AC   .
XX
DT   21-AUG-2017 (Rel. 22.08, Created)
DT   21-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Cotesia congregata.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hATm-1_CCo.
XX
OS   Cotesia congregata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae; Cotesia.
XX
RN   [1]
RP   1-3643
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (21-AUG-2017).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(612..1010,1080..1232,1273..2016,2020..3015)
FT                 /product="hATm-1_CCo_1p"
FT                 /translation="LESVYIIAIQIQFFTIPPNAIYERFIYNEVSKFWSRA
FT                 GIPVQYSSRCTAKLAKLYNNYRDAQKNSNAEFEQEFSEYLDKLFDIAHGDV
FT                 QNKVDSDVLKFLNDQRTVRKYHLRILKSENDSIESVGKLQLNYKLLIVSSI
FT                 LENPIFKEDEDISVAQSMNEDEISDDLDSTITDDRSKSSNLSKYSLFFICL
FT                 LDLTLPPSSKSISEQILSSGTTSTSWQSISSTFELQGRNYEPKNERGTINI
FT                 LTEDLVATLDSCRISYRNSVRVISSIASALGVDTNDLILNKTSFNEYRSKI
FT                 RKEAAEKTKMLFGDIDVGAVVVHWDGKLIPDDLSCKKFDRVPIIVRSYNIE
FT                 KILDVPALPDGKGLTQAEAIFTALQHWGITENVKAICCDTTASNLGCRNGA
FT                 AIHLEQMLQTELLYLPCRHHIYELVLVCVFTTKIPGTEPNVKLFKSFKETW
FT                 STVDQTKYKNGLVGNKIPRKLMGKVEETNNKIENFLGTTLPRDDYKEFLEL
FT                 CQIFLGTIDTKKVYFHKPGAFHHARWMSKAIYSLKICIFRDILDIDDETKK
FT                 NLLDICLFIVFIYVPFWFEAPLAALAPNQDLRFLKAVYQYKTIDKQISEAV
FT                 LNKFKNHLWYLNGETAALSFFDENISFSIKRKMVKALENNENQDFDSSKRY
FT                 GIHTISEIVNLQKKDIDFFINSDSLQFFERFNIDKNFLKLDVETWADNNDY
FT                 LEGLRIVKNLQIVNDVAERAIKLTQEYINILTTREDQKQYLIQVVSEYKKK
FT                 YPNATKACLTKKL"
XX
SQ   Sequence 3643 BP; 1328 A; 508 C; 601 G; 1206 T; 0 other;
     tagggtgtcc gttgattccc aaatcgattt ttttttagca atcgccccct gaatctttag        60
     tttatgacct aaaaaaaaat atccaacaca aatgggctct taattttcac attaacccgt       120
     gccggaatca tgttatattt cccatttaaa taacatgaga tttttagact ttttactttt       180
     aatttttttt ctcagaaaca aatgggagta aaaatttgat cgatgcatat tctggtagga       240
     aattgaacgc tctacaaaaa agttctctta tgaattttcg ataaaacaac tccttcaaaa       300
     gttattcaac gttaaacttg ggtttattgt caattctatg atatttttaa ttttattttc       360
     atttttacct cttttggcta taaaatcgtt gaaataaaag attattatta ttatcaatag       420
     agtaccaatg atcatttatg tcgatataat ggtctaaaca gaaaaccaaa agaaaaaaat       480
     taatttttga gaaatataag cgataacaaa actttggatt tgctatgaac atgtaattaa       540
     gtttatgtag tataaattaa agtatttaaa tcggtatttt gtgtttactt actgaattca       600
     atccttatta attagagagt gtatacataa ttgccattca aattcaattt tttactattc       660
     cgcctaatgc catctatgag aggtttattt ataatgaagt gtcaaaattt tggagtagag       720
     ctggaattcc agtgcaatat agttcaagat gtacagcaaa attggcaaaa ctttacaaca       780
     attacagaga tgcacaaaaa aattcaaatg cggaatttga gcaggaattt tccgaatatt       840
     tagacaaatt attcgatatt gcacatggtg atgttcaaaa taaagtcgac agtgacgtct       900
     tgaaattttt aaatgatcaa aggacagtga gaaaatatca cttacgcatt ctcaaatcag       960
     aaaatgattc tatcgagtcg gttggtaagt tgcaattaaa ttataagttg tagttaaata      1020
     aaaattatta gaacctggga aagatattgt aattgctaaa taaaatattt ctttgttaat      1080
     taatcgtatc atcaattcta gaaaacccaa tttttaaaga agacgaggat atctcagtgg      1140
     cccaatctat gaatgaggat gaaattagtg acgatcttga ttcaacaatc acagatgatc      1200
     gctcaaagtc aagtaattta tcaaagtatt cataaaaggt ttatctactt gataagggtt      1260
     acatagttat aacttttttt tatttgtttg ttagatctga cgttaccacc aagctcaaaa      1320
     agtataagcg agcaaatttt gagtagtgga acaacatcta cgtcttggca aagcatatcg      1380
     tcaacatttg aattacaagg gcgaaattat gaaccaaaaa atgaaagagg aacaataaat      1440
     attctcactg aagatcttgt tgcgacatta gatagttgca gaatttctta taggaattct      1500
     gtacgagtga tttcatcaat agcgtcagct cttggagttg ataccaatga tttaatcctt      1560
     aataagactt cttttaatga atatagatca aaaatccgaa aggaggctgc tgaaaaaacg      1620
     aaaatgttat tcggtgacat tgatgttggt gcggtggttg tccattggga tggaaaattg      1680
     atacctgatg atttatcctg taaaaaattt gatcgagttc cgataatagt gagaagttac      1740
     aacattgaaa aaattttaga cgtgccagca ttgccagatg gtaaaggatt gactcaggca      1800
     gaagcaattt ttacagcact tcaacattgg ggaattactg agaacgttaa agcgatctgt      1860
     tgtgacacta cggcttcaaa tcttggttgt cggaatggag cggccataca cctagaacaa      1920
     atgttacaaa ccgagctttt atacttacca tgtaggcacc acatctacga gttagtatta      1980
     gtttgtgttt ttacgactaa aataccaggc acagagtgac caaatgttaa attatttaag      2040
     agctttaaag aaacttggag tacagttgat caaactaagt ataaaaatgg attagtaggc      2100
     aataaaattc ctcgaaaact aatgggcaag gttgaagaaa caaataacaa aattgaaaat      2160
     tttctgggta cgactttgcc tcgtgatgac tataaggaat tcttagagtt atgtcaaata      2220
     tttcttggta ctatagatac caaaaaagtt tacttccaca agccaggagc gtttcaccac      2280
     gcccgctgga tgtctaaagc gatttattcg ctcaaaatat gtatttttcg agatattttg      2340
     gacatagatg atgagacgaa aaaaaatctc ttggatattt gtttatttat tgtattcatt      2400
     tatgtgccgt tttggttcga agcacctctt gcggcgttgg ctccgaatca agatttgaga      2460
     tttttgaaag cggtgtatca atataaaaca atcgacaaac aaatatccga agctgtctta      2520
     aataaattta aaaaccattt atggtattta aatggtgaaa cagctgctct ttcatttttt      2580
     gatgaaaaca tatctttttc catcaaacgg aaaatggtca aggctttaga aaataatgaa      2640
     aatcaggatt ttgattcctc caaacgctat ggaattcata cgattagtga aattgtgaat      2700
     ttgcaaaaaa aagatattga tttttttata aattcggatt ccttacaatt ttttgaaaga      2760
     tttaacattg ataaaaattt tttgaaacta gatgttgaaa cgtgggcgga caataacgac      2820
     tatttagaag gcttacgaat tgttaaaaat ttacaaatag ttaatgatgt cgccgaaaga      2880
     gcaattaaat taactcaaga gtatattaat attttaacaa cacgagaaga tcaaaaacaa      2940
     tatttgatac aagttgtaag tgagtacaag aaaaaatatc ctaatgcgac caaagcttgc      3000
     ttaacaaaaa aattataaag aaagaaaaat aataataaat ctgcttataa tattatagac      3060
     aaagaaattt ttacattttt atttcaccat tttccatcaa tttattttaa agtatgtctg      3120
     tatgcggaaa ggtatgttat ttcttttagt tctcataaaa aagttttttc cccttgattt      3180
     tctgtttagg ccattatatc gacataaata atcattggta ctctattgat aataataata      3240
     atcttttatt tcaacgattt tatagccaaa agaggtaaaa atgaaaataa aattaaaaat      3300
     atcatagaat tgacaataaa cccaagttta acgttgaata acttttgaag aagttgtttt      3360
     atcgaaaatt cataagagaa cttttttgta gagcgttcaa tttcctacca gaatatgcat      3420
     cgatcaaatt tttactccca ttttttttct gagaaaaaaa attaaaagta aaaaatctaa      3480
     aaatctcatg ttatttaaat gggaaatata acataattcc ggcacgggtt aatgtgaaaa      3540
     ttaagagccc atttgtgttg gatatttttt tttaggtcat aaactaaaga ttcagggggc      3600
     gattgctaaa aaaaaatcga tttgggaaat aacggacacc cta                        3643
//
ID   hATm-2_AA   repbase;    DNA;    INV; 6488 BP.
XX
AC   .
XX
DT   30-OCT-2007 (Rel. 12.10, Created)
DT   20-MAY-2019 (Rel. 24.05, Last updated, Version 2)
XX
DE   hATm-2_AA, a family of autonomous hATm DNA transposons - a
DE   consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; hAT superfamily;
KW   Autonomous DNA transposon; hATm group; hATm-2_AA.
XX
NM   hATm-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6488
RA   Kapitonov V.V. and Jurka J.;
RT   "hATm, a distinct group of hAT DNA transposons in animals.";
RL   Repbase Reports 7(10), 1047-1047 (2007).
XX
RN   [2]
RP   1-6488
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (20-MAY-2019).
XX
DR   [2] (Consensus)
XX
CC   hATm is a separate group of hAT DNA transposons. Significant
CC   identity between hATm and hAT transposases appears after PSI
CC   BLAST iterations. hATm transposons exist in genomes of different
CC   animals, including segmented worms (Helobdella robusta, leech),
CC   flatworms (Schmidtea mediterranea, freshwater planarian), insects
CC   (Aedes aegyptus, mosquito), and tunicate (Ciona savignyi sea
CC   squirt). All identified hATm transposons are characterized by
CC   8-bp target site duplications and conserved termini
CC   (5'-TAGGgtGgyccnnA). The planarian hAT-7_SM,hAT-8_SM and
CC   hAT-10_SM transposons also belong to the hATm group. Their
CC   putative classification as hAT transposons was not supported by
CC   significant similarity (BLAST and PSI-BLAST) to known hAT
CC   transposase proteins.
CC   hATm-2_AA is a young family of hATm autonomous DNA transposons
CC   identified in the mosquito genome. The consensus sequence was
CC   built based on multiple alignment of 3 copies. The 5'-terminal
CC   portion of the transposon is not known.
CC   [2]: sequence updated to full-lenght.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(929..953,1511..1711,3280..3488,3894..5273)
FT                 /product="hATm-1_AAp"
FT                 /note="transposase."
FT                 /translation="MTVLNEVFHTQRSKSKMSLNAEEKRQLFVNKLSDKLP
FT                 CTVPCSESPLKVNETLESDKENTEKKAERNFTDRGKEKRPVAYKINLTTPK
FT                 VAAAFERTGISNRNASMILEALIEDNHTKSSSSTEYSINYQTIRRSRMQHR
FT                 QELAEKLKQSFDPSVPLVLHWDGKMLPDQNGKRVDRLPIVVTGSGVSKLLS
FT                 VPTVSSGTASAETAAIMEVISEWGLQERLVGMSFDTTSVNTGVNNGIISRL
FT                 PALLNKNMLALACRHHVAEIVLKHVFEIFGDKSKSSNLDCFNEFKKEFNEN
FT                 RGDQKLKTVLDDIRLKTLTEPWRDSVVEFCKDQLANQQQRGDYEELLELVI
FT                 MFLGEVPPKGIRLRKAGCLSRARWMGRSIYLLKLWIWTDNREDQKLWDHYT
FT                 TVALFIAQCFVRYWFRVNCSISAPRVDLEFSNEIHRFHDEKYRSAALKAFK
FT                 NHLWYLSEWNAAMAFFDPAIDSLEKQKMVVALNSSATPLGSHAKRRKTDKV
FT                 QNKIPMRATQIDENMTVSSYITEASKTFFDIMRIKTSFLHIDPAEWEKDEA
FT                 FLLGRDRVMALEVVNDVAERAVKLATDYNNKITKDPKQHNDLLQVVEYHRK
FT                 LKPLKY*"
XX
SQ   Sequence 6488 BP; 2157 A; 1145 C; 1183 G; 2003 T; 0 other;
     tagcctggga catggttata tgaaaaatat aaattcttgc tccagtccac ttttcgtgct        60
     cctcttgggt cctgtaatga ctgtgcaaaa ttttagctga atccgtgaaa ctatatttta       120
     gcgccagcgg tttgaagttt acataggatt tactatggga aaactaagtt ttccaaaaaa       180
     aaatctctag aggccgtcca tggtccccat aattcaaatc tgttgaattt ctgtatagaa       240
     aaaatatcaa tgaatcatac cttcgaagac cacaaatcga tcggacgcat gccgaaaaag       300
     ttattaagca taaaccaatt agtaatactc cgaacggatc attatttcat ttaactagca       360
     gcactgctgc ttctgctgtc ggtgggtggt ggtggtggcg tgtttgctat ggttagggat       420
     tcacgcagca agggagaaac ccgatagcgt gcgttaaaag tgaacgattt gaatgaaatt       480
     ttcacatttg ttgttggtat gatgggcggc gtaatttcca caggtgtgaa tattatttaa       540
     tccaagtgtt atttattgaa cggcgtattt actatatgat tttgaaggat cagtagagct       600
     ataaagccgc ataattatga cttacatgtc ataaccaaat tcgcatataa gctcaaattc       660
     cataaaaaaa atatagccat ggttgatgat atttagggag atagcgtgca gatttatgtt       720
     aataatccac ttattggttg tatcgatagc aattaaataa tctctggatt gaaatgattg       780
     ccacatgatg gcgattataa tgcacagcac acgatcaatc tttaaaataa cgttcaattc       840
     gggactacaa aatagctgat attttcatcg gtttaatgtg agaaaacaag agaaaaaata       900
     tgtctttctt tattatttct cacacacgat gacagtactt aacgaggtat tccgtaagtg       960
     caagtgcttt gtgaaatata tttttgcgtc ttcttgcaaa ttctcttcta tcctctccgc      1020
     tgtttctctg cttttcattc tcttcttatc ctactctctc tgtcaaccgt gtcaacccag      1080
     tgaatggcat tgttgacgtg attccggcag ctactagtcg actgtataaa aaatcaaaag      1140
     tagagcgcga gctgtgattg ttgtatcgaa aaacatggca agctcggcag taaaacagtg      1200
     tttgcgttca aaagtccagg tgcctttaat cggaccagtg ttgattaatt ttagtaagaa      1260
     cagaattccc acgaaaagag aagccttgca ggtgttgttt ttttacaatt atgtaaaaca      1320
     tctcaacgtt tcaatgagca taagtgaagc ggccgaccaa ataatgaaat tggaaattga      1380
     gggcctggcg ataaaacgaa aagatatcat acaagcttgc ttgcagcgat tgtacaatga      1440
     ttggcgaggt taaattcgat atttatcttt atttttttct actgatatga cgaaaattta      1500
     cattctatag atactcagcg ttcaaagagc aaaatgtcgt taaatgccga agaaaagaga      1560
     caactttttg tgaataaact ttctgataaa ttgccctgta cggtgccatg ttcggagagt      1620
     cctttaaaag tcaacgaaac gctggaatca gacaaggaaa atactgagaa aaaagcagag      1680
     cggaacttca ctgaccgcgg aaaagagaag agtgagtaaa aatttcttaa tattgcaaat      1740
     tatgttgggc agcgtccata aatgatgtag catttttcgg ccaatttttg acactcccct      1800
     cccccgtcgt agcctatttt cccatacctg ataagtagca aaatcgtaag ctcccccctc      1860
     cccactaaaa tgctacgaca tttatggacg gtcccttggt gttttctgca cttcttgata      1920
     taaatatcgg atatgtaatg ttagcacatc ctgggaatta attactaagt caatttctta      1980
     ttttttccgt atttaatgca cacaaaaata ctatgtattg cgaagcatat tcgtgtggca      2040
     taaatttgag aaaatagaaa caaaatcaga caatttgaca aatcgtcatt atcactacct      2100
     acaatataat ggagatacta aattttgata tgaactgtca taatatgtcc aactgacatg      2160
     gtttatccaa gcattgtcct taagaaggat ttttctagaa gttattctaa ggattttccc      2220
     gtaatttgcc tggagtagtt tcaacatatc atcctaataa tttctctaga taggctgatt      2280
     gggctatttc aaggaagttt cagagaattg cagttagctg taacgtaaag ttagttaaga      2340
     aattttaccc gtatccaagc tatccttatt ataatattct taacccctgg tattacacaa      2400
     aaacatctta taacgattcc tgcaagaatt tctccagaga attttttttt caagaatttt      2460
     gtctaaaaat tcacttagca gtaattctgc attttatttt ttcctcataa ctccctcaaa      2520
     tattaaaaca gaaattcttc caagtaaata atttaaaaca attcgaagat tttttcaggt      2580
     tttcaacaaa tgcttcatcc ggcttttatt tgtataatga tttttttcta cgaaaatctc      2640
     caagaacact aatacacaaa aataacccag cagaaccaaa aaagaaataa tctagatatc      2700
     tttctttgaa ttctgcaagg tttattctta gaagcaatat tcgaatttgt tgataaattc      2760
     aatgaattac ttgaatagtt gaaatagttt acggaggaag ttttgctaca aatgattaga      2820
     ttaacattta gctttttagt aacttaagct ttgtgttttg aagatttact tttcataaaa      2880
     cacataaccg gtggaaaaac ggtaaataaa tcttaaaata actcaaatgg attaaaggag      2940
     ccttttgaga tggaatttca gaaaaatatt caaagctgcg ggtgttattt ctggaagaaa      3000
     ctttgtttaa atgtatctca tgaatccttg aagaaactat acaacattac caagatgtgt      3060
     gtaagtctgc tcattgtgaa tgaatgaata agatggatgt cctacctagt ttaagatttc      3120
     atgtaaaaaa tgtgcaatgt tgtgaagaag cagttttctc cggaataaat gacaaatcta      3180
     caaaatagca cagctcgtta aatttgcaag acatcgacta agaaccggtc aaaataaacg      3240
     agaacaaatt gctcgaggaa ttttattttc aattttcagg gccagtcgct tataaaatta      3300
     atctcacaac cccgaaagtg gcagcagcat ttgaaagaac tggaatttcg aatcgaaatg      3360
     caagtatgat acttgaagcc ctaattgagg acaaccatac aaaatcatcc agctcaactg      3420
     aatactcgat caattatcag accattcgtc gttccaggat gcagcatcgc caggaactgg      3480
     cagaaaaagt aaatatatat ttcttataac ataggtcgaa ttattaatcg gctttaataa      3540
     aaacagttcg actatttaaa taagaaaaca taacttccgt tttaaaagtt tataaaggct      3600
     taacaatttt gattgcttaa aattacatac aacttttttt caaccaacgt gaatcggttt      3660
     tttgaattag agtgcaatga aaaaaataaa catttcaact gttgatttca gttcttgtca      3720
     tagttcttgt aatattaata ttttaaaata gttctaaata agaaaattat taacatgccc      3780
     aatcataatt tcttaaatcc ttatcatgtc gactggcttt attttaaata tcatttaatc      3840
     ttttaatctt taaatctttt ttcctttgtt ttcttacttt gtgtattcat cagcttaagc      3900
     aaagttttga tccatctgta cctttggtac ttcactggga tggaaaaatg ctacctgacc      3960
     aaaatgggaa acgtgttgac cggcttccca tagtagtaac tggatcggga gtgtcaaaac      4020
     tgctttcagt acctacagtt tccagtggaa cggccagtgc agaaacggct gcgataatgg      4080
     aagtaattag cgagtgggga ttgcaggaaa ggctagtcgg tatgagtttc gacactacca      4140
     gcgttaacac cggcgttaac aatggcatca taagtcgcct tcctgcgctc ctcaacaaaa      4200
     acatgctagc gttggcatgc cgccaccacg tggcagaaat tgtactcaaa catgtcttcg      4260
     aaatcttcgg cgacaaatcg aaatccagca atctcgactg ttttaatgaa ttcaaaaaag      4320
     aattcaacga aaaccgaggt gaccaaaaac ttaagaccgt tctagacgac atccgtttga      4380
     agacattgac tgagccttgg agggatagcg ttgttgaatt ttgcaaggat caacttgcaa      4440
     atcaacagca acgaggagat tacgaagagc ttcttgaatt ggtaattatg tttttgggtg      4500
     aagttcctcc taaaggcata agattacgaa aagcaggttg tctcagccgg gcaagatgga      4560
     tgggtcgaag catttatctg ctgaagttat ggatttggac agataatcga gaagatcaga      4620
     aactgtggga ccattacacg accgtggctc tgttcatcgc ccaatgtttt gtaaggtatt      4680
     ggtttcgagt gaactgttcc atttccgccc cacgagtcga tttggagttt tccaatgaga      4740
     tccataggtt ccacgatgaa aaatacagat cggcggcatt gaaggcgttt aaaaatcatt      4800
     tgtggtactt gtccgaatgg aacgcggcca tggcattttt tgacccagca atcgatagtt      4860
     tggaaaagca aaaaatggtg gtggccttaa acagctcagc gacaccacta ggaagccatg      4920
     caaagagaag aaagacggac aaggtccaga acaaaattcc aatgagggca actcaaatcg      4980
     atgaaaatat gacagtttca agctacatta cggaggcttc caaaactttt tttgatataa      5040
     tgagaataaa gacgagtttt cttcatattg atcccgcgga gtgggaaaaa gatgaagcct      5100
     ttctattggg aagagatcgt gtaatggctc tggaagtagt gaacgatgta gcagagaggg      5160
     cagtgaaact ggcaacagac tataataaca aaataacaaa agatccaaaa caacataatg      5220
     atctgctaca agtagtagaa tatcacagaa aattgaagcc gctgaaatac tgaagtttag      5280
     aataagcata atgatacgta ttgttttcta tgatttgaaa ttgaactcaa aagaggtttt      5340
     gttattgatg aattggatta aaaacttgtt gagaaataaa aaagggaaaa atataattca      5400
     aacatgtgtt tcacttataa tttgaaagaa gtcatggttt ttcagtcaaa aattgcaggt      5460
     aacaatttgt tattaaattt attaattatt ttctatactt caatgtattc caaatttgaa      5520
     aacttaaact cgttataatg aacacatcgt caacaataat ttcggttgag atatttatga      5580
     aacctaaaac acgggttctt cttactatat cttcatagac atatactaag tgttcaacac      5640
     aattaaaaat aaacacgccc cgaataacta gtaatgctaa acaaccttta aaaaataaag      5700
     cgcatattaa aacactttaa aatcgtaaat gtcttcgcga gttttcgtgt ttctttgtct      5760
     ttttatttaa gtagattata aacaaaaacc tgcacgctat ctccctaaat atcatcaacc      5820
     atggctatat tttttttatg gaatttgagc ttatatgcga atttggttat gacatgtaag      5880
     tcataattat gcggctttat agctctactg atccttcaaa atcatatagt aaatacgccg      5940
     ttcaataaat aacacttgga ttaaataata ttcacacctg tggaaattac gccgcccatc      6000
     ataccaacaa caaatgtgaa aatttcattc aaatcgttca cttttaacgc acgctatcgg      6060
     gtttctccct tgctgcgtga atccctaacc atagcaaaca cgccaccacc accacccacc      6120
     gacagcagaa gcagcagtgc tgctagttaa atgaaataat gatccgttcg gagtattact      6180
     aattggttta tgcttaataa ctttttcggc atgcgtccga tcgatttgtg gtcttcgaag      6240
     gtatgattca ttgatatttt ttctatacag aaattcaaca gatttgaatt atggggacca      6300
     tggacggcct ctagagattt ttttttggaa aacttagttt tcccatagta aatcctatgt      6360
     aaacttcaaa ccgctggcgc taaaatatag tttcacggat tcagctaaaa ttttgcacag      6420
     tcattacagg acccaagagg agcacgaaaa gtggactgga gctgggattt gatttttgtc      6480
     ccacacta                                                               6488
//
ID   hATm-3_AA   repbase;    DNA;    INV; 4130 BP.
XX
AC   .
XX
DT   30-OCT-2007 (Rel. 12.10, Created)
DT   22-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   hATm-3_AA, a family of autonomous hATm DNA transposons - a
DE   consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; hAT superfamily;
KW   Autonomous DNA transposon; hATm group; hATm-3_AA.
XX
NM   hATm-3_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4130
RA   Kapitonov V.V. and Jurka J.;
RT   "hATm, a distinct group of hAT DNA transposons in animals.";
RL   Repbase Reports 7(10), 1048-1048 (2007).
XX
DR   [1] (Consensus)
XX
CC   hATm is a separate group of hAT DNA transposons. Significant
CC   identity between hATm and hAT transposases appears after PSI
CC   BLAST iterations. hATm transposons exist in genomes of different
CC   animals, including segmented worms (Helobdella robusta, leech),
CC   flatworms (Schmidtea mediterranea, freshwater planarian), insects
CC   (Aedes aegyptus, mosquito), and tunicate (Ciona savignyi sea
CC   squirt). All identified hATm transposons are characterized by
CC   8-bp target site duplications and conserved termini
CC   (5'-TAGGgtGgyccnnA). The planarian hAT-7_SM, hAT-8_SM and
CC   hAT-10_SM transposons also belong to the hATm group. Their
CC   putative classification as hAT transposons was not supported by
CC   significant similarity (BLAST and PSI-BLAST) to known hAT
CC   transposase proteins.
CC   hATm-3_AA is a young family of hATm autonomous DNA transposons
CC   identified in the mosquito genome. The consensus sequence was
CC   built based on multiple alignment of 4 copies that are 1-10%
CC   divergent from the consensus. TIRs are 140-bp long.
CC   The region 1436-2448 is an inserted CR1-82_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(400..649,1084..1325,1655..1771,2208..2355,
FT                 2431..2628,2685..3853)
FT                 /product="hATm-3_AAp"
FT                 /note="transposase."
FT                 /translation="MARGRLIKFVGPQCEVIKGARLPTVRQVLAAFYYQLR
FT                 WLKLSIRSSARKAVRQVLSYWKKNEIPITSEIQCILKVEALHAELSDNSVV
FT                 EFESTSEDSEKEEVEHSESIRKSQRGTQNVMTLELVQALDAAKASSDAAAV
FT                 ILAAAAKAFGVDLEKKLILTVLPFIKKARCNRKWCDEIDVGSQLCCESIWR
FT                 RENRFGIATLECSSKMIGRSIRWKVIAEHFVMLIVSDFFGTNLQIDLRGLA
FT                 SDDNPQLFELRQRTVRDQVERQAVLVTGKRTVQLLGVPFLEKGTGKAIGEA
FT                 VIELIEKWNLNDRIKAMSFDTTSVNTGWKNGAASCIERHLETNILWLPCRH
FT                 HIMELVLESVFHTIMGPTTGPDVTIFKKIQSNWNSFDKDAYEVPLISGFPD
FT                 FLKNRVSQIVCFAENSILVRILSRILVLRCYFLHYQLFLQLGQPRDDYREF
FT                 LELTIIFLGRVPPRGIQFRDPGPVHNARWMAKGIYCLKMYLFRAQFPQLEN
FT                 TDDLFSVCVFIVGVYIEAWYSAPFAASAPRSDLKLIADLKSFGSFHSDAAG
FT                 AAKKIANHLWYLSEELVGLSVFDTSLSFEEREKLVESIKNKQGNDDPPKKR
FT                 NVTELSICLDELATTNTMEFFKILNIRTDFFDQPAEEWSTNVEYRRGEEII
FT                 VNLKVVNDHAERAVKLMQDYNRNVSRKEDDFQNLLLTVEDLRKKLPNKQKA
FT                 TIRNFINT"
XX
SQ   Sequence 4130 BP; 1313 A; 771 C; 878 G; 1168 T; 0 other;
     taggccgtcc cttatttttc gaaatttcga aaagttaaaa gttcgttatt ctaaagtgct        60
     cgttttggtg agaaaaaaat catgtaaaat tatgaagtcc gtattttgac gttaagtggt       120
     cccccaacga ccctaaaggt attagatgta ggtgagcccc tcacgcagcg aaaagctcgc       180
     tactctagtg cacgcagcat gagtagcgat atccctttcg atacgcactc aaccgcgcac       240
     gttgagcgtt agcaaaaagc tttatttgtt tgtatttgtg aacgatttca caacgtaaac       300
     aattacacag ttatgcattc cataaaacac gagattagtt tagactagca catcggtacg       360
     tacgattgca ttttttaagc agtgaaatta atcgtaaaca tggcgcgtgg cagattaatc       420
     aaatttgtgg gacctcaatg tgaagttata aagggagctc ggctcccaac agtccgtcaa       480
     gtgttagctg cattctacta tcaacttcga tggctgaaac ttagcatcag atctagtgca       540
     aggaaagctg ttagacaagt tttaagctac tggaaaaaaa acgaaatacc tataacgtct       600
     gaaattcaat gcattttgaa agtcgaagca ctgcatgctg agttatctgg tatatgtaaa       660
     catacactgc gtaaaaatag caatgctcaa aaggaacgcg agcttcggtt ctgcaataaa       720
     cttgttggcc tcttcgatat atgtatcaaa aagtacggca atattggaca tgcaaaaaac       780
     tgtcaataaa tcgaaaaatt tgacgttgaa gcgagcaact caagaaaaca tagatttctt       840
     gagagaccag aggggaggaa atcgcataaa tacgcttgat gatgcacatg aggttctttc       900
     tgcaaatatt cgtaaaaagc agcaaaaaat gaaagaaaaa aagatcctag atgcgcgtcg       960
     gatgagggct gcagctcaat caattattgg taatatgttt gttaattttc accatggatt      1020
     tttagttgaa acctttgata atatacaata ctttaaacat ttttttttta ttatttactt      1080
     cagacaactc agtagtagag tttgaatcta ctagtgaaga ctctgagaag gaagaagtgg      1140
     agcactctga atctattcga aagtcacaga gaggaacaca aaacgttatg actttggagt      1200
     tagtacaggc tcttgatgca gcaaaagcca gctcagatgc agctgcagtc atcctagctg      1260
     ctgctgctaa agcatttggc gtcgatttgg aaaaaaaact aatattaacc gtactaccat      1320
     tcatcgtgag cgcgaaaagc taagagctga attggcgtct cacttgatgg aaaattttaa      1380
     tccagatgat attctcacgg tccactggga tggaaaaata gtgacttctt tatctgttta      1440
     tctgtttatc tgtttattat tgtaactcat cggacttatt agtctaaatg ataataaaag      1500
     gagcaattaa gataactaac aatacattat cattaacatt caaaaagtga gaatcacact      1560
     agtcgtaatc gcataatacg gttgacaaaa cgtttagcag gttcaccgaa ctcatattcc      1620
     tcttccacaa ttgaaaaggt ccttaacatt gcagaaaaag gctcgttgta accgaaagtg      1680
     gtgcgatgaa atcgatgttg gatcacagct gtgttgcgag tccatctgga ggcgcgaaaa      1740
     tcgattcggg atagcaaccc tggagtgttc agttcgttac tgataatttt agctgcagtg      1800
     gaaatctgtg caatattacg ccgacgttcc aacgtgtcca gattgagtaa ttggcaccta      1860
     tctggatagg gaggtaggtt tacagggtca cgccatggta aacttctcag cgcaaaccgt      1920
     atgaaccgtt tttgaaccct ctcaattctc aagttccaag tgagttggtg aggagtcaaa      1980
     caaccgaggc agtctctaaa attgggcgga caagggcaca atacaatgac ttaagacagt      2040
     agggatccgt gaagttttgc gcaattttag aaataaaccc aagctggcga tttgccttgg      2100
     caatgatttc cgtcatgtgg ggtatgaagg tcagcttagt gtccaattga acaccaaggt      2160
     cgcatacttg atcaactctg ttcagtagta taccatcgat tttgtagtca aagatgatag      2220
     ggcgttcaat tcgatggaaa gtcattgcag agcattttgt gatgcttatc gtcagtgatt      2280
     tcttcggcac caatttacaa atcgatctaa gagggcttgc aagtgatgac aatcctcaat      2340
     tgttcgaact gagacgtaga tttttgcatc atccgcaaat atggatttac aatttggtcc      2400
     aaggagcaac gcagcatcat taatatacag agagaacagt aagggaccag gtggaaagac      2460
     aagcagtact tgtgacgggt aagagaactg ttcagttact tggagttcct ttccttgaaa      2520
     agggtactgg taaagcaatt ggagaagctg taattgaatt gattgagaaa tggaacctta      2580
     atgatcgtat caaagccatg tccttcgata ctaccagcgt gaacacaggt aatcgtcgaa      2640
     tatttaacag ttatcaaacc ttaatattca ttatattttt caaggatgga aaaatggagc      2700
     tgcttcgtgt atagagcgcc acttagagac aaacattttg tggctgccat gcagacacca      2760
     tattatggaa cttgtcctag aaagtgtgtt ccatacaatt atgggaccaa caaccggacc      2820
     tgacgtaacc attttcaaaa aaattcaaag taactggaat tcgttcgata aggatgcata      2880
     tgaagtacca ctaatatccg gtttcccaga tttcttgaaa aatcgcgtgt ctcaaatcgt      2940
     atgttttgct gaaaacagta tccttgtgag aatcttatcg agaatattgg tattgcgatg      3000
     ttacttctta cattatcaat tatttttaca gcttgggcag ccaagagatg attatcgtga      3060
     gtttctagaa cttaccatca tttttctggg ccgtgtcccc ccaagaggaa ttcagtttcg      3120
     tgatcctggc cctgtacaca atgcacgctg gatggccaaa ggcatctact gcttgaaaat      3180
     gtatctcttt agagcacagt ttccacagct tgagaatacc gatgatttgt ttagcgtatg      3240
     tgtgtttatc gtgggagtat acattgaagc ttggtattcg gcaccgtttg ctgcgtctgc      3300
     accacgtagt gacctcaaac tcatagctga tctaaagagt tttgggtctt tccattcgga      3360
     cgctgctggc gctgctaaaa aaatcgcaaa ccatttgtgg tatttgagtg aggagctagt      3420
     tggcctttca gtgtttgata ctagtttgtc gtttgaagaa cgagaaaagc ttgtcgaatc      3480
     aattaaaaac aagcaaggaa atgatgatcc acctaaaaaa cggaatgtca ccgagctaag      3540
     catttgcctt gacgaactgg ccacaacaaa caccatggag ttttttaaga tactgaatat      3600
     tcgaactgat ttcttcgatc aaccagcgga ggaatggagt acaaatgttg aatatcgaag      3660
     aggagaagaa attattgtta atctcaaagt agttaacgat cacgcggaaa gagcagtaaa      3720
     actgatgcaa gattacaaca ggaatgtatc ccgaaaagaa gacgattttc aaaaccttct      3780
     gcttactgta gaagatcttc gaaagaagct gccaaacaag caaaaagcaa caattcgaaa      3840
     ctttattaac acatgaaata aatatacttt tcaaggaata tgatatgata catatattac      3900
     tttcatccga ctagtaccct atcgatgcct aaggcacata cgttagagca gcgtgctcgt      3960
     aggcgtgtcg gggggtggcc tataccagat acctttgggg ccgttggggg accacttaac      4020
     gtcaaaatac ggacttcata attttacatg atttttttct caccaaaacg agcactttag      4080
     aataacgaac ttttaacttt tcgaaatttc gaaaaataag ggacggccta                 4130
//
ID   hATm-6_CV   repbase;    DNA;    INV; 4737 BP.
XX
AC   .
XX
DT   22-AUG-2017 (Rel. 22.08, Created)
DT   22-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Cotesia vestalis.
XX
KW   hAT; DNA transposon; Transposable Element; hATm-6_CV.
XX
OS   Cotesia vestalis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae; Cotesia.
XX
RN   [1]
RP   1-4737
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (22-AUG-2017).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(636..935,922..1446,1659..2297,2411..2719,
FT                 2785..3552)
FT                 /product="hATm-6_CV_1p"
FT                 /translation="MIFFVSFICNNLKCQLHWHFILLRLFSMYFQILFYQL
FT                 YINFFVREAFCSELHYFFCWYSNASATYVVFLNYLRCLLVYQYIFSAPKTH
FT                 HFVYMIITIFSKQFFRNKAFSHYINSFIINNSTMNKEIRLIGIPVQKLTNP
FT                 KLPKVKEVMREFFYQLKVLKFSIKQSAKNSADKVIELSEAPNVVKKILRFH
FT                 SEWLKLQKDFNKKSDKVKEKEFQTDLEQLFDIVSKNSLKGVDDNIRKLYLD
FT                 QKFCTHKEILSNIVPASNSTTDMMEIDESSKYLKTLITDLNQPSTSHGIVL
FT                 SGKSESFSTHTLSGTTNSGSDLEYEPPIPTKRAKINVLTPKVVSALDRANV
FT                 SSRNAMFIIAPVLSAAGIKIEDTTLSYRSIQRARMVQRKDIAQGLKDNFKT
FT                 HDKYVVHWDGKMLNDLIESKSVERLPVLLTAYGTEQLLGVPKMNSGTAVNQ
FT                 TSAILSTLSEWGIIKYVKAMCFDTTAVNTGNQSITKNILLLSVSSIIVLQE
FT                 FTTVHVRKIEKILGRELIWLSCRHHIFEIVLRGAFEVFWPVSSGPNVQMFG
FT                 RFKKFWDDIDITNYKSDVEDAVVADIISNKKDEISSFITKSLQVLLQPRND
FT                 YKELLELSLIFLGEMPQEKISFKRPGAVHHARWMTKAIYSLKMYLFRDEFK
FT                 LSQKELHGLRHFCIFIVTLYLKAWFSSTSATTAANHDLQFMKNLLEYKHIN
FT                 PLISSATCEKMISHSWYLSDELAILSLFDDSVPLEVKKSIVEAVNTREGTD
FT                 SKAKRFVIAKKHLNSLAQRTLSDFVSKKSLNLFKIFDRPYDFLDVDGELWP
FT                 TNESYLKNKEYFQQLKVVNDSAKRAVALVSEYNQCLTKNEEQFQY"
XX
SQ   Sequence 4737 BP; 1663 A; 721 C; 741 G; 1612 T; 0 other;
     tagggtgggt cgaaaaaatc taataattta tttttgactt catactctga aaaataggtt        60
     cgtagacacc taaaaagaat tctctccaat tataagctct taattataac gggaaggtcc       120
     tccgctttgc gggtgtctat ttttttcgaa taatcagata aaaaaatttg tatctcgctt       180
     ccaactgctt ggaaaaatat tgcgtggcat agattttgtg agaaattgaa tgctttacaa       240
     aaaaggtctc ttatgacttt ttcaaaaact caaccaatta aaagatattc atagttgaag       300
     tttggctatt ttaaggaaaa tattcgtttt tattatgaat tttataagtc aatgaaaaaa       360
     aattatttcg gattgcggaa ctcatgatgt tgtaggaaat ttactgctct acaaaaatgg       420
     tctcctatga ttttttgatt aagtgaagcc gttacgagat attcatcgtc aaacattaac       480
     gaatatcaat atttccagtt tttgaccaat aattcgataa attttaattt aaactatgag       540
     tttcaggaaa atttacataa atttaaattt ctatcataaa agtcactcct acaggagtta       600
     tttgttcaaa aattcactaa gaagtttttg ttctaatgat attttttgta agctttattt       660
     gtaataattt aaaatgtcaa ttgcattggc atttcatatt attacggttg tttagtatgt       720
     attttcaaat tttattctac caattataca taaatttttt tgtgagagag gctttttgtt       780
     ctgaattaca ttacttcttc tgttggtact ctaacgctag cgccacctat gttgtatttc       840
     ttaactatct tcgttgtcta cttgtttatc agtacatttt cagtgctcca aaaactcatc       900
     atttcgtata catgataata acaatttttt cgaaataagg cattttctca ttatataaat       960
     tcatttatta tcaataattc tacaatgaat aaagaaatac gtttaatcgg tatacctgtg      1020
     caaaaactca ctaaccctaa gttaccaaaa gtgaaagagg ttatgagaga gtttttctat      1080
     caacttaaag ttttaaagtt ttcaatcaaa caaagtgcaa aaaattcagc tgacaaggtt      1140
     attgaattga gtgaagctcc taatgtagtc aaaaaaattc tccgttttca tagtgagtgg      1200
     ttgaaattac aaaaagattt taataagaaa agtgataagg taaaggaaaa ggagtttcag      1260
     actgatcttg aacaattatt cgacattgta agtaaaaatt ccctaaaagg ggtggatgat      1320
     aacattagga agttgtattt ggatcaaaaa ttctgtacac acaaagagat tctttcgaat      1380
     attgtacctg cgtcaaactc aactacagat atgatggaaa tcgatgaaag cagtaagtat      1440
     ctgaaataaa taattgttat aaattcagtt aggagtgtaa aacttccttt atatttatta      1500
     taaacaatga gaatatcatt tttctactta acttgcatta taaatatcag tattcctacg      1560
     tatgacattt gactccacgg tatctggtac tcatgtttaa ttgcttctca tcataatgaa      1620
     taagtgttgg aaaatttgtc tgtttaattt aaaaatgaac tcttattaca gacttgaatc      1680
     aaccgtctac cagtcatggg attgttttaa gtggaaaatc agaatcattc tcgacgcata      1740
     cattaagtgg aactacaaat tctggatctg atttggagta tgaaccccca attccgacaa      1800
     aacgagcaaa aataaatgtc ttaactccta aagtcgtttc tgcacttgac agagctaatg      1860
     tcagcagtag aaacgcgatg ttcattattg ctccggtttt atcagctgct ggtataaaaa      1920
     ttgaagatac aacgctcagc tataggtcca tccaacgagc tcgtatggtt caaagaaaag      1980
     acattgctca aggattaaaa gacaatttta aaacacacga taaatacgta gtgcattggg      2040
     atggtaaaat gctaaatgat ctaattgaat ccaaatctgt ggaacgacta ccggttcttt      2100
     taactgcgta tggtactgaa caattacttg gagttccaaa aatgaattct gggacggcag      2160
     ttaatcaaac atccgccatt ttatcaacat tgagtgaatg gggtattata aagtatgtca      2220
     aggcgatgtg ttttgacact accgctgtta atacaggtaa tcaatcaatt acaaaaaata      2280
     ttttattgtt gtcagtctag tttaatttct atttcttact aaattttact atcaaaatgt      2340
     attaatcgtt tactcgttta gatttgaaat ataaccattg atttttctta aatactaaat      2400
     tcaacgatag tcatctatta ttgttctaca ggaattcaca acggtacatg taaggaaaat      2460
     tgaaaagatt ttgggaagag agttgatctg gttatcatgt cgtcatcaca tttttgagat      2520
     cgtattaagg ggcgcatttg aagtattttg gcctgtgtca tctgggccaa atgtacagat      2580
     gtttggaagg tttaaaaaat tttgggatga tatagatata actaattata aatctgatgt      2640
     tgaagatgct gttgttgctg atatcatttc gaataaaaaa gatgaaatct ctagttttat      2700
     tacgaaatct ttacaggtat gatttaactg tgattcaaat tataaaaatt tcgttatttt      2760
     tgacaaattt tttatttttg atagttacta caaccccgaa atgattataa agaattattg      2820
     gaattatcat taattttcct tggagaaatg cctcaagaaa agatttcttt caaacgtcct      2880
     ggtgctgttc atcatgctag atggatgact aaggccattt atagtttgaa aatgtatcta      2940
     ttcagagatg aattcaaact ctctcagaaa gaattgcacg gtcttcgtca tttctgtatt      3000
     tttatagtca cattgtattt aaaagcttgg ttttcatcaa cttctgcaac aactgctgct      3060
     aatcatgact tgcagtttat gaaaaattta ttggagtaca aacatatcaa tcctttgatt      3120
     tcttcagcta cgtgtgaaaa aatgatttcg cactcatggt atttgagcga tgaacttgcc      3180
     attttatcac tgtttgacga tagcgttcca ttagaagtaa aaaaaagtat tgttgaagct      3240
     gttaatactc gtgaaggtac agattctaaa gctaaaagat ttgtaattgc taaaaaacat      3300
     ttgaattcat tggcgcagag aactctgagt gactttgtgt ctaaaaagtc attaaatctt      3360
     ttcaaaatct tcgatcgacc gtatgacttt cttgatgtcg atggtgaatt atggcctact      3420
     aatgagagtt atctcaaaaa taaagaatac tttcaacaac taaaagttgt caatgattca      3480
     gcaaagcgag ctgttgcatt agtcagtgaa tataatcaat gcttgacaaa aaatgaagaa      3540
     caattccagt actaattgca agttgtcaaa ggacatcaaa aaacattccc aaattgtaat      3600
     aaaagaaatt atttatagta atagcgtact gttatgttaa aaatatagac aattacattg      3660
     caattgataa ttcaataaaa aatttatcta aaccggtgag gttagccaag cggtctaagg      3720
     cgcatggctt atagagcgct cggactagct caccggccag gcgtgggttc gaatcccaag      3780
     ctggtcttag aaaccatctt ggttaacatt caaccctttc cgcgtagatt aagattttca      3840
     caaccccaaa agaccccaac gtaccattcc caacagttaa agtcggcgat atgaccacag      3900
     cagttaaaac cgactctaaa tagaattaat taaaaaacaa aaaaaaaaaa tttatctata      3960
     aaaaagttaa atactggttg tttctcactt gattcaatac ttttcatatt aaatttgaca      4020
     aagaaatatg tcattcactt caaattaaac taatcattgg ctatatgtcg aaaaaaatgc      4080
     tctaatttct tgttttaatg caatcaaaca agctcaagac tgaaaacaat attaaaaaaa      4140
     ttgtttataa catttcttta tcgatcgaaa ctcaaattta tgtaaatttt cctgaaactc      4200
     atagtttaaa ttaaaattta tcgaattatt gatcaaaaac tggaaatatt gatattcatt      4260
     aatgtttgac gatgaatatc tcgtaacggc ttcacttaat caaaaaatca taagaaacca      4320
     tttttgtaga gcagtaaatt tcctacaaaa acatgagttc cgcaatccga aataattttt      4380
     tttcatcgac ttataaaatt cataataaaa acgaacattt tccttaaaat aaccaaactt      4440
     caactatgaa tatctttaaa ttggttgagt ttttgaaaaa gtcataagag accttttttg      4500
     taaagcattc aatttctcac aaaatctatg ccaccgaata tttttccaag cagttggaag      4560
     cgagatacaa atatttttat ctgattattc gaaaaaaata gaaacccgca aagcggagga      4620
     ccttaccgtt ataattaaga gcttatactt ggagagaatt ctttttaggt gtctacgaac      4680
     ctatttttca gagtataaag tcaaaaataa attattcgat ttttttgacc cacccta         4737
//
ID   hATm-6_RP   repbase;    DNA;    INV; 4388 BP.
XX
AC   .
XX
DT   22-AUG-2017 (Rel. 22.08, Created)
DT   22-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Rhodnius prolixus.
XX
KW   hAT; DNA transposon; Transposable Element; hATm-6_RP.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4388
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (22-AUG-2017).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(901..1425,1590..2198,2374..2745,2766..3599)
FT                 /product="hATm-6_RP_1p"
FT                 /translation="MDKEIHLIGKLVQKLSERKLPTVKEVMSVFFHQLKVL
FT                 KCSVKQSAKNAADQVIELWKNNQIATSESTSVIKKILRYHNRWLKLQKSFA
FT                 RKKSSGRCKNEIKFQNELKALFDIVDNKSLKLLGNDIQELYSNQKSDTRKE
FT                 ILSNNPNKSNRTMTMMEVNESRKYLQHLIIINFSHNIITLILDLNQPSTSH
FT                 EIARSEKSESSSTLTLSQATNFGSDLEYVPQMPITRAKINILTPELISALD
FT                 RANVSSRHAMFIIAPVLSSVGVNIEDTTLSYRTIQRTRMLLRKDIAIGLKD
FT                 NFKAHDKYVVHWDGKILNDIAESKCVDRLPILLTAFGTEQLLGVPKMNSGS
FT                 AENQAAAILSTLNQWGIIHYIKAMCFDTTAVNTGNSLIIYFYSTGIHHGTC
FT                 KEIEKAIGRELIWLPCRHHIYEIILRSAFEVYWPVSSGPNVPIFGRFKKFW
FT                 DTIDKTKYKSGVEDTIVANIVMNDKNDLSTFITRYLHLQVLFENNFKGRGK
FT                 FLTFYELSQPRDDYKELLELSLIFLGEMPRDQVSFKRPGAIHHARWMAKAI
FT                 YCLKMFIFRDEFVLSKKELDSSRQLCIFIVIVYVKAWFSSTSATSAANHDL
FT                 EFMKNLIKYKQINPLISSVTCEKMTLHLWYLCDELAVLSLFDDTVPVNIKK
FT                 NIVEAVKTREGTDSKARRFIIDKKNLDSILQKNISDFVSKKSMKLFELFDL
FT                 PYDFLDKNIDLWSTDDSYNENKEFFAQLKVVNDVAERGVALVSEYNQCLTK
FT                 NEEQFQFLLQVVKEHRKNYPTCNKNLFEN"
XX
SQ   Sequence 4388 BP; 1579 A; 607 C; 660 G; 1542 T; 0 other;
     tagggtgggt caaaaaaatc ggctattttt ttttttacaa gtgcaacgga aaaatgggtt        60
     cctagacacc ttaaaaaaat tcccaccaaa tatgagctct taattttgaa aggaagatcc       120
     tccgcatcgc agttttttat tttttttttc agtccaatag aaaaaaattc atacctttcc       180
     attaattgac tgtacaaaaa aatgtttcga ataaattttg taggaaattt aatgttctac       240
     aaaaaaggta tcttatattt ttttcgtaaa cctcgccatt tgaaagatat aaaggattta       300
     attttgatta ttttatgaca aattccattt ttgtttatga attttatacc tcgacaataa       360
     atgactttta cgaaatgcga aatactaata tttgttggaa attaactgct ctataaaatc       420
     ggtgtcttat gttttggcga taaagttaac cgttcaaaag atattcatca tcaaactttc       480
     atgtgtacgg attttaaaag tttttgatta gatattcgaa aaatttcaat ttaatttata       540
     aatttcattt cttgtcatta atataagtat tatttgagtt ttattttcaa aattatcaaa       600
     atttttcttc atttattcta aacattttag ttttaatcat tagaaatcac gagatcctag       660
     ggaaaatttc ttctctagaa tttttgtttc gtattttatt tcatctgttt gaattgtgaa       720
     ctttgaacta gcaccaccta ctttttactt catcgttatg ttgtcgttgg tttgtataca       780
     tttatttcta cagcattttt agtgtttcca aaatttatgg tcttgtatat gtgatcgatc       840
     gattaattat ttacaaatat tgtggttact acgtgaatta acttgatatt tatcgaaaat       900
     atggataaag aaattcattt gatcggaaaa cttgtgcaaa aactttcaga acgtaagtta       960
     ccaacagtga aagaggttat gagtgttttt tttcatcagc tcaaagtttt gaaatgttct      1020
     gtcaaacaaa gtgccaaaaa tgcagctgat caagttattg aattatggaa aaacaaccag      1080
     attgcgacta gtgaatcgac tagtgtaata aaaaaaattc ttcgctatca taatcgatgg      1140
     ttgaaattgc aaaaatcttt tgcgcgaaaa aaatcatcag gacgatgcaa aaatgaaata      1200
     aaatttcaga acgaacttaa agcattattt gatattgtcg ataataaatc attaaaactg      1260
     cttggcaatg atattcaaga gctatattca aatcaaaaaa gtgatacccg gaaagaaatt      1320
     ctttctaata acccaaataa atcaaacaga actatgacta tgatggaagt aaatgaaagt      1380
     cgtaagtatt tacaacattt aattatcata aattttagtc ataattaaaa atcaattgaa      1440
     ttgattataa aaataaataa taaaatatat ttatttaata aattatatca taaatgtcaa      1500
     tatgttcatg ataataaata aaaaattatt cgtgttcttt atctgatatc aaaataaatg      1560
     cgtttcatat ttgtgcttcc gttaattaaa ttataacgct tattctagat ttgaatcaac      1620
     cctcaaccag ccatgagatt gctcgaagtg aaaaatctga gtcatcctca acgcttacat      1680
     taagtcaagc tacaaatttc ggttcagatt tagagtatgt tcctcaaatg ccgataacac      1740
     gagcaaaaat aaatatttta actccagagc ttatctcggc actcgacaga gctaatgtca      1800
     gtagtagaca tgcgatgttc attattgctc cagttctatc aagtgttggt gtaaatattg      1860
     aagatacaac tcttagttac agaacaattc aacgaactcg catgctctta cgaaaagaca      1920
     ttgctatagg actaaaagat aacttcaaag ctcatgataa atacgtcgtg cattgggatg      1980
     gcaaaatact gaatgacatt gctgaatcga aatgtgtgga tcggttaccg attcttttga      2040
     ctgcttttgg tactgagcag ttacttggag ttccaaaaat gaatagtgga tcggcagaaa      2100
     atcaagcagc agctatctta tcgacattaa atcaatgggg tattattcat tacattaagg      2160
     cgatgtgttt tgacacgact gccgttaata cgggtaacta atcaatgatg atatatttaa      2220
     aaaaaatttc attttcatct ttctagttga attgttttca tacataaatt gaattatcag      2280
     ctcgtgccta ttatttataa tgattcattt attaagattt tgaataagtg taacaatttt      2340
     tcttaaatgc ataacttaaa gtgtgattaa taatcactga ttatctattt ttactctaca      2400
     ggaatccatc acggtacatg caaagaaatt gaaaaggcca taggaagaga attaatttgg      2460
     ttaccatgtc gccatcatat ttatgaaatc attttgagga gcgccttcga agtgtattgg      2520
     ccagtatcat ccggtccaaa tgttccaata tttgggagat ttaaaaaatt ttgggacaca      2580
     atcgataaaa cgaagtataa atctggtgtt gaagatacta ttgttgctaa tattgttatg      2640
     aatgataaaa atgatttatc tacatttatc acacgatatt tacacttaca ggtattattt      2700
     gaaaataatt ttaagggtag aggaaaattt ttgacttttt acgaataatt gattatttat      2760
     ggtagttatc gcagccccga gatgactata aagaattatt ggaattatca ttaatttttc      2820
     ttggagaaat gcctcgagat caagtttcct ttaaacgtcc tggagcaatt catcacgcaa      2880
     gatggatggc aaaggcaatt tattgcctaa aaatgtttat ttttagagat gaatttgtcc      2940
     tttctaagaa agaattggat agttctcgac aactttgtat ttttatagtt atagtgtatg      3000
     taaaagcttg gttttcatca acttctgcga cttctgcggc taatcacgac ttagagttca      3060
     tgaaaaattt aattaagtac aagcaaatta atcctttgat atcctcggtt acatgtgaaa      3120
     aaatgacttt acatttatgg tacttatgtg atgaacttgc cgttttatca ctatttgatg      3180
     ataccgtacc agtaaacata aagaagaata ttgtcgaagc tgttaagact cgcgaaggta      3240
     cagattctaa agcaagaaga tttataattg ataaaaaaaa tttggattca attctgcaaa      3300
     aaaacataag tgactttgtt tctaagaagt caatgaaact gtttgagctc tttgatctgc      3360
     catatgattt tcttgataaa aatattgatt tatggtctac tgatgacagt tataatgaaa      3420
     ataaagaatt tttcgcacaa ttaaaagttg ttaatgatgt ggcagagcga ggtgtcgcat      3480
     tagtaagtga atacaaccaa tgcttaacaa aaaacgaaga gcaatttcaa tttttattgc      3540
     aagttgtcaa agagcatcgg aaaaattacc caacttgcaa caaaaacttg tttgaaaatt      3600
     gaaataaaat acttatttat aactagttgg acattgtttt tctctgatac tgaaacatat      3660
     cataatataa tatatgtata atgaaaactt tgcttttttt attaataaat atttaactga      3720
     gcgataaata atgtccaatt cattttttaa atcgagacaa atatacttaa acataaataa      3780
     aaacttaaaa aatattttga cgtttctcaa tcgataacaa ctaaaattcg tgtaaatttt      3840
     cttaaaaatc ataaattaaa ttgaaatttt tcgaatatct aatcaaaaac ttttaaaatc      3900
     cgtacacatg aaagtttgat gatgaatatc ttttgaacgg ttaattttat cgccaaaaca      3960
     taagaaacca tttttataga gcagttaatt tccaacaaaa attggtattt tgcatttcgt      4020
     aaaagtcatt tattgtcgag ttataaaatt cataaacaaa aatggaattt gtcataaaat      4080
     aatcaaaatt aaatccttta tatctttcaa atggcgaggt ttacgaaaaa aatataagat      4140
     accttttttg tagagcatta aatttcctac aaaattcatt cgaaacattt ttttgtacag      4200
     tcaattaata gagaggtatg aatttttttc tattggacta aaaaaaaaat gaaaaactgc      4260
     gatgcggagg atcttccctt caaaattaag agctcatatt tggtgggaat ttttttaagg      4320
     tgtctaggaa cccatttttc cgttgcactt gtaaaaaaaa aaatagtcga tttttttgac      4380
     ccacccta                                                               4388
//
ID   hATm-NA6_CC repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   22-AUG-2017 (Rel. 22.08, Created)
DT   20-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Cotesia congregata.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hATm-NA6_CC.
XX
OS   Cotesia congregata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae; Cotesia.
XX
RN   [1]
RP   1-354
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (22-AUG-2017).
XX
SQ   Sequence 354 BP; 114 A; 61 C; 60 G; 119 T; 0 other;
     tagggcgtgc caaaatgtat cttccttgat ggacctttta aaattggaat tttgagttcc        60
     acttttaaca ggagttacgt ttgggcattt cctgtcatat tttgagcgta aaggatttat       120
     ttgattttta tagaattttt taacaggagt tttgttcggc taaattttga aatttttaaa       180
     ttccagcaaa aatggccgaa cgaaactcct gataaaaatt tctgtaaaaa tcaaataaat       240
     cctttacgcc caaaatttgt caggaaatgc ccaaccacaa ctcctgttaa aagcggaact       300
     cgaaatttca attttaagag gtccatcaag gaagttacat tttggcacac ccta             354
//
ID   hATm-NA6_CV repbase;    DNA;    INV; 355 BP.
XX
AC   .
XX
DT   22-AUG-2017 (Rel. 22.08, Created)
DT   22-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Cotesia vestalis.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hATm-NA6_CV.
XX
OS   Cotesia vestalis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae; Cotesia.
XX
RN   [1]
RP   1-355
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (22-AUG-2017).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 355 BP; 110 A; 63 C; 69 G; 113 T; 0 other;
     tagggtgtgc caaaatgtaa cttccgtgag gaacctttta aaattggaat tttgagttcc        60
     gcttttaaca ggggctgtgt ttgggcattt cctgagatat tttggggtga gacgataaat       120
     ttgattttca tagaattttt taacagaagc ttagtttggg catttccgct gaaaattcaa       180
     aatttggccg gaagtgccca attgaatctc ctgttaaaaa ttctatgaaa atcaaataaa       240
     tcctctcacc ccgaaatatc tcaggaaatg cctaaacaca gctgctgtta aaagcggaac       300
     tcaaaatttt aattttaaaa ggttcctcac ggaagttaca ttttggcaca cccta            355
//
ID   hATm-NA6_GI repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   22-AUG-2017 (Rel. 22.08, Created)
DT   22-AUG-2017 (Rel. 22.08, Last updated, Version 1)
XX
DE   A hAT transposon from Glyptapanteles indiensis.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hATm-NA6_GI.
XX
OS   Glyptapanteles indiensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Ichneumonoidea; Braconidae; Microgastrinae;
OC   Glyptapanteles.
XX
RN   [1]
RP   1-354
RA   Zhang H.H., Zhou Q.Z., Wang P.L., Xiong X.M., Luchetti A.,
RA   Raoult D., Levasseur A., Santini S., Abergel C. et al.;
RT   "Unexpected invasion success of miniature inverted-repeat
RT   transposable elements in viral genomes.";
RL   Direct Submission to Repbase Update (22-AUG-2017).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 354 BP; 122 A; 61 C; 55 G; 116 T; 0 other;
     tagggtgtgc caaaatgtaa cttccttgat ggacctctta aaattgtaat tttgagttcc        60
     gcttttaaca ggagttgtgt ctgggcattt cctaacatat tttaagccta acgaatttat       120
     tagattttca gaaaattttt taacaggagt tttgattagg catttttgct gaaatttcaa       180
     aatttcaaaa tttggccaaa caaaactctt gttaaaaaat actatgaaaa tataataaat       240
     cccttacgct caaaatatgt caggaaatgc ccagacacaa ctcctgttaa aagtggaact       300
     caaaactcca attttaagag gtccatcaag gaagttacat tttggcacac ccta             354
//
ID   HATN1_AG    repbase;    DNA;    INV; 1724 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   HATN1_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   HATN1_AG; nonautonomous DNA transposon; hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1724
RA   Kapitonov V.V. and Jurka J.;
RT   "HATN1_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 2(11), 14-13 (2002).
XX
DR   [1] (Consensus)
XX
CC   HATN1_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily.
CC   The HATN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies of this transposon identified
CC   in the sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   HATN1_AG
CC   occurred recently (in the last 1 Myr).
CC   HATN1_AG elements are flanked by 8-bp target site duplications.
CC   HATN1_AG has 15-bp terminal inverted repeats.
XX
SQ   Sequence 1724 BP; 575 A; 350 C; 289 G; 508 T; 2 other;
     caggtatgtc aaactggcgg cccgcgggcc gcatgcggcc ctcgtcaatg ctgaatgcgg        60
     cccgcgagaa tattttgaga attgctaaaa tcactccaaa ccaaaaaact gttattacta       120
     tttgtcgaag tgtatttaat tttccagaga agaacaatca tttagatggt atatttttcg       180
     aatctaacat gaatgtaccc ataacatctc ataaacttat tctacacaat cgtacagaac       240
     aatcgagacc cttaagaaac attgaattga acgcaaactc agtcggtatt atgtttcgat       300
     taaattctga atattagcat agtattgtgc acactcgatt gcacattcta tatggaaaaa       360
     tagatttgcg actaccttyt accaacgaaa aagtaatgaa aataacttga tacacacact       420
     tggaaacttc gcaacaacta atgatggatt gtcagaatcg catccacggc tcaaaaccat       480
     tttcgatctt agctatagca acttcgaatc cggccaaatc aaaccaacag ttccgttcgg       540
     tgccgtccga agcctataga gccgtttaaa gccattcgga accgttggag tcatcggttg       600
     tygcacggag cggctaatct acagtgagaa atggatccgg tcggtcccac cgaatttgac       660
     catctcaatg cccccgagtg ccgagtaaag gattcattcg gctccgaatt tctccgattt       720
     gcacggctcc aaccttataa tgttacatca ttgatgttgg attggagcca cttctgtttt       780
     tttgtcataa tcatgccacc atcaatttta ataaagatga ttgtagccaa gttggaattt       840
     tgtctacccc acattttgca agacgaatta atgtactttt gaacctcccc aaaaatctaa       900
     accaaaatga tatgattacg cttaagacta agagatttag attaaggatt aaaataatcg       960
     aaatgccaaa gccctgcaat acatagctta ttaatagatt agctcacaca gtccatacct      1020
     caattcgcga atcatctccc ttcaagtgca aaacaagatt tgccaatctt tatgggatca      1080
     cacaccacga atcttcgtca gataaaatta tcgtaattta acaaaattat tcgtaaaata      1140
     tgggttcttg taataagaaa tgccaccata ccaccatata ccaccatata ccccttcgaa      1200
     cttagaaatt agcgaaaaat aatgtttaaa cacgtttttt ttacaatttt cctcttgatc      1260
     tatcaaaaaa ttgcatgcaa atatttttgt tattcatcca gcggtggata gctcggatgg      1320
     cttgaaaaag ttccgcaaca ggctggtaga cttcccctac ctcagtaaaa aagtgtggtt      1380
     gagtgatatt ttctaacaga agtgccgtgt tagaccgcga ctaatgagaa atttcctatt      1440
     ttaataataa ggatgaaaac aacgcatgtg actttaaaag tgcattaaac attttttttt      1500
     aaataaaaaa gtgcacaata aaaaaaccat agcaaatttg taaataagaa actattccag      1560
     atttgaagca aggagtacaa aaagtcaatt tgtttaacaa taatgatttt aaacagtatt      1620
     ttatatgatt attgaggtat attttttatt ctcaactttg cggcccacga atcactgaaa      1680
     atctgtactt gcggccctct tatgaattga gtttgacaca gctg                       1724
//
ID   HATN2_AG    repbase;    DNA;    INV; 365 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   HATN2_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; HATN2_AG; nonautonomous DNA transposon;
KW   hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-365
RA   Kapitonov V.V. and Jurka J.;
RT   "HATN2_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3(2), 19-19 (2003).
XX
DR   [1] (Consensus)
XX
CC   HATN2_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily. One subfamily of HATN2_AG was formed as
CC   a result of transpositions of the P4_AG transposon whose copies
CC   harbor HATN2_AG.
CC   HATN2_AG elements are flanked by 8-bp target site duplications.
CC   HATN2_AG has 15-bp terminal inverted repeats.
XX
SQ   Sequence 365 BP; 73 A; 94 C; 120 G; 78 T; 0 other;
     cagtggcgga ttaagggtat cgggggccct aggcggtaag acgagttgag gccccctgta        60
     aatggtaaat ggtgttgggg gggtggtagc ggcactaaac ttgctgttgg gagattgaac       120
     agtaaacttg aaatgccgtc gggggccctt cgatcatcag tcacaggctc taaaattttt       180
     gctgacgggg gggggggggt gcaaatgatt cgccagcctc ggggccccaa cgtccatcct       240
     tccgggggcc cttgtcgcta gtactctgtc catacggcat actatagaat ggcgatctac       300
     ggggccccta aatcggcggg gccccaggcg accgcctagt ccgcctaccg ttagatccgc       360
     cactg                                                                   365
//
ID   HATN3_AG    repbase;    DNA;    INV; 348 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   HATN3_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; HATN3_AG; nonautonomous DNA transposon;
KW   hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-348
RA   Kapitonov V.V. and Jurka J.;
RT   "HATN3_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3(2), 20-20 (2003).
XX
DR   [1] (Consensus)
XX
CC   HATN3_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily. HATN3_AG copies are ~3% divergent from
CC   the
CC   consensus sequence. HATN3_AG has 15-bp terminal inverted repeats.
XX
SQ   Sequence 348 BP; 61 A; 88 C; 113 G; 84 T; 2 other;
     cagtggcgga tttagggtgt tgggggccct aagcgttaaa aggagtggag gccccccggt        60
     tggtgtcgag cggggggggg gggggggtgc atattgttgc attaggtttt gaatcaaacc       120
     cacttcaatg gtttgctggc gggggggggg ggkgtstgct cagaatccct gtactgggcc       180
     cctatagttt atgagtccct tcatccatgg ggcccctaac tagcacagaa gctcttgttg       240
     agactactgt acacattgtt ctatatgctg gacttcctta cacggggccc ctacattgac       300
     ggggcccccc gcggccgctc agtccgcgca ccgttaaatc cgccactg                    348
//
ID   HATN4_AG    repbase;    DNA;    INV; 762 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   HATN4_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; HAT1_AG; HATN4_AG; nonautonomous DNA transposon;
KW   hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-762
RA   Kapitonov V.V., Pavlicek A. and Jurka J.;
RT   "HATN4_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3(3), 59-59 (2003).
XX
DR   [1] (Consensus)
XX
CC   HATN4_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily. HATN4_AG copies are ~5% divergent from
CC   the
CC   consensus sequence. HATN4_AG has 15-bp terminal inverted repeats.
CC   HATN4_AG has imperfect 11-bp terminal inverted repeats (3
CC   mismatches).
CC   The nonautonomous HATN4_AG elements are related to the HAT1_AG
CC   autonomous transposon. These elements share the ~85% identical
CC   450-bp 3' and 120-bp 5' termini, respectively.
CC   The genome harbors ~100 HATN4_AG elements.
XX
SQ   Sequence 762 BP; 265 A; 178 C; 125 G; 192 T; 2 other;
     tagagttgtg cctcaagtac cagaactgta cgattcattc aattcatcct aaagaacgaa        60
     cgatctacgt tcatctaatc aacgttcatc gattctttat aaatcataat gcactgagtt       120
     ggtcaccaaa ataacgtcct aaataacgcc cgccaaaata acgaacgtta tagtacgcca       180
     ggtcgttcat tttccccata caaatatgaa cgtgaaccgt atgaccagga cgttcacgaa       240
     aagaacgacc tatccgtcga aataaagaac gtcctagtac gctaggtcgt tcattcccgt       300
     catacaaata tgaacgtgaa ccgtaatacc aggaccatgt aatgaacgtc ctacacgtcg       360
     aaatgaagaa cgtcctagta caccaggtcg ttcattttcc caatacaaat atgaacgtga       420
     accgtatgac cmggacattc ackaaaagaa cgacctatcc gtcgaaataa agaacgtcct       480
     agtacgctag gtcgttcatt cccgccatac aaatatgaat gtgaaccgta ataccagtac       540
     gttcatgaaa agaacgtcct accaatcgta ataaggatct tcctggtctg cctaataatt       600
     ttcaagatgc aaaacaattt acaatttgca atacaataaa acaatttacc atattttctt       660
     caactgaaat gaacgaatga atcgcgattc acgttcagtt catctgaatg aaagaactag       720
     tacgttcacg ttcatggaaa tgaaccgaat tgcccaagcc ta                          762
//
ID   HATN5_AG    repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   HATN5_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; HAT1_AG; HATN5_AG; nonautonomous DNA transposon;
KW   hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-205
RA   Kapitonov V.V. and Jurka J.;
RT   "HATN5_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3(3), 60-60 (2003).
XX
DR   [1] (Consensus)
XX
CC   HATN5_AG is a young family of nonautonomous DNA transposons that
CC   belongs
CC   to the hAT superfamily. HATN5_AG copies are less than 1%
CC   divergent
CC   from the consensus sequence. Some copies are 100% identical to
CC   each
CC   other. It is likely that this family is currently transposable.
CC   HATN5_AG has imperfect 23-bp terminal inverted repeats (10
CC   mismatches).
CC   The genome harbors ~100 HATN5_AG elements.
XX
SQ   Sequence 205 BP; 52 A; 50 C; 40 G; 63 T; 0 other;
     caaggataat gtatttagaa ggttgatttt tatcgctttt gctgggcgac attgtggggg        60
     acatctgtca ctctctgcat acaaatttca ttaccccgca ccagccctcc ccgattttta       120
     taccggagcc cccggaagag aaatgtcaag tcgagaaatg tcattttgct ctgaacaact       180
     tcaccttgtc atttataaca ccttg                                             205
//
ID   HATN6_AG    repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   HATN6_AG is a hAT-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; HATN6_AG; nonautonomous DNA transposon; TC1N-2_AG;
KW   hAT superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-315
RA   Kapitonov V.V. and Jurka J.;
RT   "HATN6_AG: a family of nonautonomous hAT-like DNA transposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3(5), 91-91 (2003).
XX
DR   [1] (Consensus)
XX
CC   HATN6_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   putatively to the hAT superfamily. HATN6_AG copies are ~2%
CC   divergent
CC   from the consensus sequence. There are several HATN6_AG-like
CC   subfamilies present in the genome.
CC   HATN6_AG has imperfect 36-bp terminal inverted repeats (3
CC   mismatches
CC   and one indel). The genome harbors ~30 HATN6_AG elements.
CC   A small subset of HATN6_AG elements (~10 copies) was transposed
CC   as a
CC   composite TC1N-2_AG-like transposon.
XX
SQ   Sequence 315 BP; 94 A; 62 C; 63 G; 96 T; 0 other;
     caggggtctc caaactacgg cccgcgggcc gcatgcggcc ctcaagagct taaaatgcgg        60
     ccccgatgac tttgccagat ttagaataaa tattaggtta ttttgacttt ttcaaaagaa       120
     attgtatttt tttttacatt tcttagacaa aaatcaagct ttagtaacac gaatctgttc       180
     aagtatcgtt agtattttgt tataaaaatg agatttaaac gttcactcat caattatagg       240
     taacatcaaa tggccctcaa catagtgatt tttgaagcaa tgcggcccgc gggctgaaaa       300
     gtttggaggc ccctg                                                        315
//
ID   HATx1-1_AAe repbase;    DNA;    INV; 1272 BP.
XX
AC   .
XX
DT   19-DEC-2018 (Rel. 26.01, Created)
DT   19-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   Half Tx1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   HATx1-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1272
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1272
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 514-514 (2021).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. Encode only ORF1.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1153
FT                 /product="HATx1-1_AAe_1p"
FT                 /translation="MTETVINTVQFRFPAGSPQPSWVEVATFLKQLDTDLM
FT                 SMETAYKTAQDRSLFIKFTSKEAMTESQRKNVDPRQFVYANGKSVAVRMST
FT                 AGANTQYVRVFDLPPELPDDSLSPVLGQFGTIEHVVREKFPPDLGLDHMYT
FT                 GVRGVYMDVKTNIPPSIDVGNRKGRIFYDGLKDTCFLCRGLGHRKDSCPQR
FT                 QSRNKKDKRKLGNSGSCSYADVVSGEARTSEALEXSEALEEDIIEVLEEED
FT                 EEEEYIDQPTEALEEEPVAQSACDTGADSEKERRRKESMEKLGEVAKAIHE
FT                 AMLNSKAAQRRAEFAASRSGTGSSTGAGPKTKVARKTRY"
XX
SQ   Sequence 1272 BP; 371 A; 269 C; 346 G; 284 T; 2 other;
     cagttctatc gttgccgtcg tcgagmacgg acgcaagtaa ttgtgttccc ccttgatcgg        60
     tttctcgtta ttgtcagaag agtttccaag cgcgctttgt ttcacggtcg ttaactgttg       120
     ctacacctct cgtggttgat ttttgtgctg tagaaacagc atgactgaaa cagtaatcaa       180
     taccgtacag tttcgctttc cggcgggtag tccacaacca tcatgggtgg aagtggcaac       240
     cttcctaaag cagctggaca cggacttgat gtcgatggaa accgcgtata aaacagcaca       300
     agaccgttcg ctgttcatca aatttacgtc caaagaggct atgacggaat cacagcgcaa       360
     gaatgtggat ccacggcaat tcgtttatgc gaacggaaaa tcagtagcag tgaggatgtc       420
     gaccgcgggt gcaaatacgc aatacgtccg tgtgttcgat ctgccacctg aactgccgga       480
     cgatagtttg tcgccggtgc tcggacagtt tggtacgatt gagcatgtgg tacgagagaa       540
     gtttccgccg gacctgggcc tcgaccacat gtacacagga gtgcgtggag tgtacatgga       600
     cgtgaaaacg aatatcccac catcaatcga tgttggtaat aggaaaggga ggattttcta       660
     cgatggtctg aaggacactt gcttcctgtg tcgaggattg ggacaccgca aggactcttg       720
     cccacagcgg caaagccgaa acaaaaagga taagaggaaa cttggaaact ctggatcctg       780
     ttcatatgct gacgtcgtgt ctggggaagc aagaacatca gaagcgttgg aaatstcgga       840
     agcattggag gaggacataa tcgaagtact tgaagaagag gatgaagaag aagagtacat       900
     cgaccagccc acggaagcat tagaggagga accggttgcg caatccgcat gtgacacagg       960
     agctgattcg gaaaaggagc gacggcggaa agaaagcatg gaaaaattgg gagaggtggc      1020
     caaagcaatc cacgaggcga tgctgaactc aaaagcagcc caacggcggg ccgagtttgc      1080
     ggcttcacgt tctggtacag gttccagtac aggtgccggg ccaaaaacaa aggtcgctcg      1140
     caagacccgc tattgataaa tttgtatgat ttttttttag aataacgaat tgttcggcaa      1200
     gataatcggc tccgtagagt ttttagaaaa caattgagcc ttccaaataa acgattagaa      1260
     aaaaaaaaaa aa                                                          1272
//
ID   HEART-1_LFu repbase;    DNA;    INV; 2502 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 26.11, Created)
DT   21-OCT-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   A family of HEARTs from the scarce chaser genome - consensus.
XX
KW   HEART-1_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2502
RA   Gong Z. and Han G.Z.;
RT   "Insect retroelements provide novel insights into the origin of
RT   Hepatitis B viruses.";
RL   Molecular Biology and Evolution 35(9), 2254-2259 (2018).
XX
DR   [1] (Consensus)
XX
CC   KB882390_consensus_sequence. Either retrotranposon or integrated
CC   virus.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..795
FT                 /product="HEART-1_LFu_1p"
FT                 /translation="MPXTRTGXHTTPXTSNMAQRERXPSPRARRXQSPHLF
FT                 TSEXEXXXXXXXDPXRPPTWAQGLLXQFQAVASRXEILEQSQTSASTPPTA
FT                 NTFAGLRRNMPLDMAPGDSQVLELASLMKLRVESGKLRPRDMYELETVLNL
FT                 ISYWETSTPDTQRILYHRLRVLAIATEHGWEVAGKVADLHKQDLLNVPPEL
FT                 LNKPAPVIVQVPTRQSRPRQQATXTGWTEPWQASQPQEWRNSQPTSQRGSQ
FT                 RGRRGPRSGSRR"
FT   CDS           632..2401
FT                 /product="HEART-1_LFu_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="SKXQPGNPDPDNKQPXQXGQNXGKPVSHKNGETXSPP
FT                 ANGVLNAADEXPDQEAAAETXPHGTAREDMEDALDLLXFLNWQGSAPPQDP
FT                 VDYPPEPDEDDSGNESEDXXXXNTGTSESDEVDNASGFLMCLPXKXIPTLV
FT                 IPPVQEVKVLPYIKCYPYQSESVXQLALLGADLPKPPDAPYVFASSRXTXE
FT                 LTLVVXNLVKQTVLEESXNIKCAFRATVIPKGSGKPRLILDLSPWTAYFNK
FT                 PKFSLLDAAKALTRLVPGTQLVKLDLLDAFHQLQIRKEHRXFYGLRLDGKT
FT                 YQFXRVPMGHTLAPAIMQRFSKEVAXEIRTQFNVHMIAYLDDWLITGYAXT
FT                 LPLXHEIANFLTQELGISLNWAKCQLTPKTXMEYLGVFIDTDHMILRLLPG
FT                 TIARVHLIICLIPRLKTDDIPKAAGFLSWVIYILDLPRFLISDVYQRRTRW
FT                 LQQLYXLQVFHKERPFNMLTENXLHIFTDATPWQGGIVIPQWNRQWTRVFD
FT                 XELPIFEAEGFMALLGPYMVHQLGLLXENXVITVHCDNXAIVHCLXKGKGY
FT                 LFTNDLYCXMFVYLIKELPHRVAWVFIPGDLNPADRPSRTLPT"
FT   CDS           1264..2115
FT                 /product="HEART-1_LFu_3p"
FT                 /translation="VRLXGXRHPKRLRETXXXXXXVTMDSLXQXXKXLXTR
FT                 RSQSLDQTGPRHTXGQARPPGRXPSTPDPERXPXXLRPSPXREDVPIXQGP
FT                 HGPXTGPSDHATLLQRSRXGNXDPIQRPHDRLXRRLXNHRXRXHAPPRPRD
FT                 SKLPNPGIRNIXKLGQMPANTKNXNGXPRXVHXHRPXDTATPARHHCQSPX
FT                 NHLXXTPPKDXRHPESXGIPQLGNLXIGFTPVPDQRRLPKKDALVTTXLXP
FT                 TSVPQXKXXQHANRKXAPHLHGRHTLAXRDRXTTMEPTMDKSX"
XX
SQ   Sequence 2502 BP; 656 A; 692 C; 530 G; 442 T; 182 other;
     cgggatcttg tcatcgggga gaccccagat ctcccgatgc ccayaacacg macaggcwcs        60
     catackacgc ctrgyacttc yaayatggcg caragggaac gyasyccytc gccscgcgca       120
     mgrcgygsgc artcgcctca yytgttyack tcrgaggysg aacrnnnnnn nnnnnnnnnn       180
     nnggacccbg ahaggccccc gachtgggcc cagggcctct tggahcagtt ccaggcagtv       240
     gcdagcagat tdgaaatatt ggagcaaagc caaacttccg cctccacccc tccvaccgcc       300
     aacaccttcg cagghctvcg caggaacatg ccvctggaca tggcccchgg agacagccaa       360
     gtcctdgaac tagchtcact catgaaacta agagtvgaaa gtggaaagct acgaccacgg       420
     gacatgtacg agttggaaac agtdctvaat ctcatctcgt actgggaaac dtccacaccg       480
     gatacccaaa ggathctgta ccacaggcta cgggttttag caattgccac ggagcacggd       540
     tgggaggtdg ccggcaaagt dgccgacctd cacaaacaag atcttctcaa cgtgcctccg       600
     gaattactca acaaaccagc cccggtdata gtccaagtvc caaccaggca atccagaccc       660
     agacaacaag caaccgvcac aggvtggaca gaaccdtggc aagccagtca gccacaagaa       720
     tggcgaaact cbcagcccac cagccaacgg ggttctcaac gcggccgacg aggdccccga       780
     tcaggaagcc gccgctgaaa ctvcaccgca tggtactgca cgggaggaca tggaagatgc       840
     cttggaccta cttgahttcc tcaactggca gggatcggcc ccgccacagg acccggtcga       900
     ctaccctccg gagccggatg aggacgactc cggvaacgaa tcvgaggaca ncnangnacn       960
     aaatacaggt accagtgaaa gtgatgaagt dgataatgcg tccgggttcc tcatgtgcct      1020
     accaavcaaa vcvatcccga ccctagtgat cccccchgtg caggaagtba aagtgttacc      1080
     ctacataaag tgctacccbt accaaagtga atcagtgttv caactdgccc thctcggtgc      1140
     cgacttaccc aaaccacccg acgcaccdta cgtgttcgcc agttcccgca dcacacvdga      1200
     gttaaccctc gtvgttcava atctagtgaa rcaaacagtg ctngaagart ccycyaayat      1260
     taagtgcgcc ttyagggcya ccgtcatccc aaaaggctcc gggaaaccrc gcytratayt      1320
     rgayttgtca ccatggacag cctayttcaa yaarccaaar ttctcsttac tagacgcagc      1380
     caaagccttg accagactgg tcccaggcac acarytggtc aagctcgacc tcctggacgc      1440
     sttccatcaa ctccagatcc ggaaagarca ccgrasmttc tacggccttc gcctygacgg      1500
     gaagacgtac caattcrcca gggtccccat gggccayaca ctggccccag cgatcatgca      1560
     acgcttctcc aaagaagtcg ctsaggaaat wcggacccaa ttcaacgtcc acatgatcgc      1620
     ytayctcgac gactggytaa tcacaggrta cgcrmtcacg ctccccctcg yccacgagat      1680
     agcaaacttc ctaacccagg aattaggaat atcaytaaac tgggccaaat gccagctaac      1740
     accaaaaaca amaatggart acctaggrgt gttcatygac acagaccaya tgatactgcg      1800
     actcctgccc ggcaccattg ccagagtcca yytaatcatc tgyctsatac cccgcctaaa      1860
     gacrgacgac atcccgaaag cygcgggatt cctcagytgg gtaatctaya tattggattt      1920
     accccggttc ctgatcagcg acgtctacca aagaaggacg cgctggttac aacarctcta      1980
     cracctacaa gtgttccaca argaaagrcc yttcaacatg ctaaccgaaa acragctcca      2040
     catcttcacg gacgccacac cctggcargg agggatcgts ataccacaat ggaaccgaca      2100
     atggacaaga gtrtttgaym angaactacc aatattcgaa gcagaaggtt tcatggcnct      2160
     aytgggaccc tacatggtac atcaaytagg actccttcma gaaaatwstg taattaccgt      2220
     tcattgtgat aaycwagcca ttgtacattg tttawcaaaa ggaaaaggtt atttgttyac      2280
     taatgatttr tattgtraaa tgtttgtgta tttaataaag gaattgcccc atagggtggc      2340
     ctgggtgtty atccccggtg acttaaatcc tgctgaccgt ccttcccgga ctcttcctac      2400
     ttaaatgcct ggccagcagc aytcytgcac cgggtattta agcgggagac cgcggatgga      2460
     caagtyagtc tggacyttgt catcggggag atacacagca ta                         2502
//
ID   HEART-2_LFu repbase;    DNA;    INV; 2526 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 26.11, Created)
DT   21-OCT-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   A family of HEARTs from the scarce chaser genome - consensus.
XX
KW   HEART-2_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2526
RA   Gong Z. and Han G.Z.;
RT   "Insect retroelements provide novel insights into the origin of
RT   Hepatitis B viruses.";
RL   Molecular Biology and Evolution 35(9), 2254-2259 (2018).
XX
DR   [1] (Consensus)
XX
CC   KB882572_consensus_sequence. Either retrotranposon or integrated
CC   virus.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..790
FT                 /product="HEART-2_LFu_1p"
FT                 /translation="MPXTRTGXHTTPGTSNMAQRERTPSPRARRAQSPHLF
FT                 TSEAEQEPXXXPDPXRPPTWAQGLLXQFQAVASRXEILEQSQTSASTPPTA
FT                 NTFAGLRRNMPLDMAPGDSQVLELASLMKLRVESGKLRPRDMYELETVLNL
FT                 ISYWETSTPDTQRILYHRLRVLAIATEHGWEVAGKVADLHKQDLLNVPPEL
FT                 LNKPAPVIVQVPTRQSRPRQQATXTGWTEPWQASQPQEWRNSQPTSQRGSQ
FT                 RGRRGPRSGSRR"
FT   CDS           627..2396
FT                 /product="HEART-2_LFu_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="SKXQPGNPDPDNKQPXQXGQNXGKPVSHKNGETXSPP
FT                 ANGVLNAADEXPDQEAAAETXPHGTAREDMEDALDLLXFLNWQGSAPPQDP
FT                 VDYPPEPDEDDSGNESEDXXXXNTGTSESDEVDNASGFLMCLPXKXIPTLV
FT                 IPPVQEVKVLPYIKCYPYQSESVXQLALLGADLPKPPDAPYVFASSRSTQE
FT                 LXLVVQNLVKQTVLEESXNIKCAFRATVIPKGSGKPRLILDLSPWTAYFNK
FT                 PKFSLLDAAKALTRLVPGTQLVKLDLLDAFHQLQIRKEHRXFYGLRLDGKT
FT                 YQFXRVPMGHTLAPAIMQRFSKEVAXEIRTQFNVHMIAYLDDWLITGYAXT
FT                 LPLXHEIANFLTQELGISLNWAKCQLTPKTXMEYLGVFIDTDHMILRLLPG
FT                 TIARVHLIICLIPRLKTDDIPKAAGFLSWVIYILDLPRFLISDVYQRRTRW
FT                 LQQLYNLQVFHKERPFNMLTENKLHIFTDATPWQGGIVIPQWNRQWTRVFD
FT                 QELPIFEAEGFMALLGPYMVHQLGLLQENTVITVHCDNQAIVHCLTKGKGY
FT                 LFTNDLYCKMFVYLIKELPHRVAWVFIPGDLNPADRPSRTLPT"
XX
SQ   Sequence 2526 BP; 686 A; 716 C; 540 G; 462 T; 122 other;
     gtcgttcttt cggcatagta tcagaaataa tatgcccaya acacgmacag gcwcscatac        60
     tacgcctggt acttccaata tggcgcaaag ggaacgcacc ccttcgccvc gcgcacgacg       120
     cgcgcagtcg cctcatttgt tcacbtcgga ggccgaacaa gaaccagann nncanccgga       180
     cccbgahagg cccccgacht gggcccaggg cctcttggah cagttccagg cagtvgcdag       240
     cagattdgaa atattggagc aaagccaaac ttccgcctcc acccctccva ccgccaacac       300
     cttcgcaggh ctvcgcagga acatgccvct ggacatggcc cchggagaca gccaagtcct       360
     dgaactagch tcactcatga aactaagagt vgaaagtgga aagctacgac cacgggacat       420
     gtacgagttg gaaacagtdc tvaatctcat ctcgtactgg gaaacdtcca caccggatac       480
     ccaaaggath ctgtaccaca ggctacgggt tttagcaatt gccacggagc acggdtggga       540
     ggtdgccggc aaagtdgccg acctdcacaa acaagatctt ctcaacgtgc ctccggaatt       600
     actcaacaaa ccagccccgg tdatagtcca agtvccaacc aggcaatcca gacccagaca       660
     acaagcaacc gvcacaggvt ggacagaacc dtggcaagcc agtcagccac aagaatggcg       720
     aaactcbcag cccaccagcc aacggggttc tcaacgcggc cgacgaggdc cccgatcagg       780
     aagccgccgc tgaaactvca ccgcatggta ctgcacggga ggacatggaa gatgccttgg       840
     acctacttga httcctcaac tggcagggat cggccccgcc acaggacccg gtcgactacc       900
     ctccggagcc ggatgaggac gactccggva acgaatcvga ggacancnan gnacnaaata       960
     caggtaccag tgaaagtgat gaagtdgata atgcgtccgg gttcctcatg tgcctaccaa      1020
     vcaaavcvat cccgacccta gtgatccccc chgtgcagga agtbaaagtg ttaccctaca      1080
     taaagtgcta cccbtaccaa agtgaatcag tgttvcaact dgcccthctc ggtgccgact      1140
     tacccaaacc acccgacgca ccdtacgtgt tcgccagttc ccgcagcacr caagagttar      1200
     ccctygtngt ycaaaaycta gtgaarcaaa cagtgctnga agartccycy aayattaagt      1260
     gcgccttyag ggcyaccgtc atcccaaaag gctccgggaa accrcgcytr ataytrgayt      1320
     tgtcaccatg gacagcctay ttcaayaarc caaarttctc sttactagac gcagccaaag      1380
     ccttgaccag actggtccca ggcacacary tggtcaagct cgacctcctg gacgcsttcc      1440
     atcaactcca gatccggaaa garcaccgra smttctacgg ccttcgccty gacgggaaga      1500
     cgtaccaatt crccagggtc cccatgggcc ayacactggc cccagcgatc atgcaacgct      1560
     tctccaaaga agtcgctsag gaaatwcgga cccaattcaa cgtccacatg atcgcytayc      1620
     tcgacgactg gytaatcaca ggrtacgcrm tcacgctccc cctcgyccac gagatagcaa      1680
     acttcctaac ccaggaatta ggaatatcay taaactgggc caaatgccag ctaacaccaa      1740
     aaacaamaat ggartaccta ggrgtgttca tygacacaga ccayatgata ctgcgactcc      1800
     tgcccggcac cattgccaga gtccayytaa tcatctgyct sataccccgc ctaaagacrg      1860
     acgacatccc gaaagcygcg ggattcctca gytgggtaat ctayatattg gatttacccc      1920
     ggttcctgat cagcgacgtc taccaaagaa ggacgcgctg gttacaacaa ctctacaacc      1980
     tacaagtgtt ccacaaggaa aggcccttca acatgctaac cgaaaacaag ctccacatct      2040
     tcacggacgc cacaccctgg cagggaggga tcgtcatacc acaatggaac cgacaatgga      2100
     cragagtgtt tgaccaagaa ctaccaatat tcgaagcwga aggtttcatg gcactattgg      2160
     gaccctacat ggtacatcaa ctaggactcc ttcaagaaaa tactgtaatt accgttcatt      2220
     gtgataacca agccattgta cattgtttaa caaaaggaaa aggttatttg ttcactaatg      2280
     atttatattg taaaatgttt gtgtayttaa taaaggaatt gccccatagg gtggcctggg      2340
     tgtttatccc cggtgactta aatcctgctg accgtccttc ccggactctt cctacttaaa      2400
     tgcctggcca gcagcattcc tgcaccgggt atttaagcgg gagaccgcgg atggacaagt      2460
     cagtctggac tttgtcatcg gggagacccc agatcatcat catcattaca tgcgtaatta      2520
     ggtaag                                                                 2526
//
ID   HEART-3_LFu repbase;    DNA;    INV; 1528 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 26.11, Created)
DT   21-OCT-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   A family of HEARTs from the scarce chaser genome - consensus.
XX
KW   HEART-3_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-1528
RA   Gong Z. and Han G.Z.;
RT   "Insect retroelements provide novel insights into the origin of
RT   Hepatitis B viruses.";
RL   Molecular Biology and Evolution 35(9), 2254-2259 (2018).
XX
DR   [1] (Consensus)
XX
CC   KB888611_consensus_sequence. Either retrotranposon or integrated
CC   virus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1449
FT                 /product="HEART-3_LFu_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KNQATFXGSEGLITXPGKSAPEVQLPVINXVQYLSYV
FT                 KCYPXDNPDVSRLVLVGADLPKPAXAPFIFLKSRVTEATKCMIQVLERQGV
FT                 VKKXPNVKCAFRFXVXPKANGKPRTILDLSPWTEYFXKPXFSLLDAAKAIL
FT                 RLGXGVKMAKLXLDXAFHQIQIKKEHXQFYGVNLEGDNYQFCRLPMGHALA
FT                 PAIMQRFAVAVAHEVEQQFSIRLVPXLDDWLLAAHDLTLEQVMTITTFLEI
FT                 ELGITLNHAKCKFXPQSSLEYLGVRIDTDSMQIQLLPATIARIHLIICVLP
FT                 RLRSQDLPKAAGFLSWAVYMLNLPRFLITDVYTRNSRWLKECYDEQVFARV
FT                 RNFDLRRLRNITIYTDATPWQGAVVIPEWDREFIHIFPEEQAIYQAEGFMA
FT                 LLAPYMLLQMXLIXCNXNVTXXCDNMSVVHSLNKGRGILFNDFNNCKXLIX
FT                 LIKELPQGVAWVHVPGHLNPADXPSXTVPNYMXGQQLV"
XX
SQ   Sequence 1528 BP; 418 A; 361 C; 336 G; 364 T; 49 other;
     aagaatcagg ccaccttcra aggctcygaa ggacttatta ctcwgccagg taaaagtgcc        60
     cccgaagtgc aattaccagt gattaatgas gtgcaatacc tctcctatgt gaagtgytat       120
     cccwatgaca accccgatgt gtcccgatta gtgctagtgg grgctgatct gccaaagcca       180
     gcagmtgccc catttatatt tctaaaatcc agagtcacag aggccacaaa gtgtatgatt       240
     caagtattag aacgtcaagg tgttgtgaaa aagktcccta atgtgaaatg tgccttcaga       300
     ttctyggtgw tacccaaggc aaatgggaaa cccagaacca ttctcgacct ttccccctgg       360
     acggagtatt ttcrcaaacc acrgttctcg ctactggatg ctgcraaagc cattttacgt       420
     ctcggacygg gagtaaaaat ggcaaaacta raccttgact yggcctttca ccaaatacag       480
     attaaaaagg aacacygcca gttctatggr gtgaacctgg aaggagataa ttaccaattt       540
     tgcaggctac ccatggggca cgctttagcc ccagcaatta tgcaacgctt cgcagtggcg       600
     gtcgcgcacg aggtggaaca acagttcagc atccggttgg tcccvtantt ggacgactgg       660
     ctgctagcag cacatgactt aactcttgaa caagtcatga caatcactac cttcctggaa       720
     atcgaactag gcatcaccct gaatcatgcc aagtgcaaat tctbbccgca atcttcatta       780
     gaatatctgg gagtaagaat cgatacagac tccatgcaaa tccagttgct gccggcaaca       840
     attgcaagga ttcacctaat catctgtgta ctgccacgcc tgagaagcca ggacctccca       900
     aaagctgcag gattcctgtc ctgggcagtc tacatgttaa acctccccag attcctgatc       960
     acggacgtat acacccggaa ctcdagatgg ctcaaggaat gttacgacga acaagttttt      1020
     gcacgagtcc ggaacttcga cctgagacga ctacgaaaca taaccatcta cacagacgca      1080
     accccatggc arggagcagt agtgattccg gaatgggacc gtgarttcat ccatatmttc      1140
     ccggaagaac aggcgatcta ycargccgaa ggtttyatgg cccttytggc accatayatg      1200
     ctactgcaaa tgcawctwat trattgtaat trtaatgtga ctrttatrtg tgataatatg      1260
     tcagtggtcc actctcttaa caagggacgt ggaatattgt tyaatgaytt caataattgt      1320
     aaaatkttga ttgawttaat aaaggaattg ccacagggag tggcctgggt ccaygttcct      1380
     ggtcacttaa accctgctga ccrtccttct yggactgtcc cgaattatat gcytggtcag      1440
     cagcttgttt gaccrggtat ataaggcrgg ygtccgggat ggcgcgtcag ttggtaaagt      1500
     gatcaggagc gggatccaga tcatcatc                                         1528
//
ID   HECTOR      repbase;    DNA;    INV; 638 BP.
XX
AC   U17152;
XX
DT   03-SEP-1998 (Rel. 3.08, Created)
DT   03-SEP-1998 (Rel. 3.08, Last updated, Version 1)
XX
DE   Transposase from DNA transposon Hector element, partial cds.
XX
KW   hAT; DNA transposon; Transposable Element; DNA transposon HECTOR;
KW   hAT superfamily; HECTOR; transposase.
XX
OS   Musca vetustissima
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Muscoidea; Muscidae; Musca.
XX
RN   [1]
RP   1-638
RA   Warren D.W., Atkinson W.P. and O'Brochta A.D.;
RT   "The Australian bushfly Musca vetustissima contains a sequence
RT   related to transposons of the hobo, Ac and Tam3 family.";
RL   Gene 154(1), 133-134 (1995).
XX
RN   [2]
RP   1-638
RA   Warren D.W.;
RT   "HECTOR.";
RL   Direct Submission to Genbank (11-NOV-1994)William D. Warren,
RL   Molecular Genetic Resource Service, CAMBIA, GPO Box 3200,
RL   Canberra ACT 2601, Australia.
XX
DR   GenBank; U17152; Positions       1     638.
XX
SQ   Sequence 638 BP; 225 A; 102 C; 133 G; 178 T; 0 other;
     caatgggtcg tcgaggattg tagacctttt tcagctgtca atggatccgg ctttgaaaag        60
     ctagtacagc atttcataaa tcttggtgct aagtatgggg aaaatattga cattaaagat       120
     ttgcttccca gccaaagaac aatatcgcgg aatatccaaa agacggctga agaaacaaaa       180
     aatggaatta aaaatgaaat tgcagaagtt gtgcgaggtg gtggtgcgtc cgctacaata       240
     gatatgtgga cggataacta tgtgaagagg aattttttag gtgtcacatt acattaccaa       300
     tcaaaatcaa aatttgttga tatggtttta ggtatgaaat cgatggattt ccaaagactt       360
     aaatctttat ttaatgagtt tggtgtgcag gatctgggac caataaagtt tgtaactgac       420
     agaggatcaa acatattgaa agccctggaa caaaacacac gactgaactg tagcagtcat       480
     ctattttcaa atgttcttga aaagtctttc gaagatactg cagaactcaa agaattatta       540
     aaggcatgcg caaaattagt taaatatttt aagaaagcta atttgcagca caaattgcct       600
     acatcattaa aaagtccatg cccgacccga tggaactc                               638
//
ID   HELENA      repbase;    DNA;    INV; 4004 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 2.00, Created)
DT   10-JUN-2011 (Rel. 16.06, Last updated, Version 2)
XX
DE   Helena repetitive element; LINE-like retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   target site duplication; poly(A) tail; LINE-like retrotransposon;
KW   HELENA.
XX
NM   HELENA.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-711
RA   Petrov A.D., Schutzman L.J., Hartl L.D. and Lozovskaya R.E.;
RT   "Diverse transposable elements are mobilized in hybrid dysgenesis
RT   in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(17), 8050-8054 (1995).
XX
RN   [2]
RP   1-711
RA   Petrov A.D.;
RT   "HELENA.";
RL   Direct Submission to Genbank (11-MAY-1995)Dmitri A. Petrov,
RL   Organismic and Evolutionary Biology, Harvard University, 16
RL   Divinity Ave, Cambridge, MA 02138, USA.
XX
RN   [3]
RP   1-4004
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (10-JUN-2011).
XX
DR   [3] (Consensus)
XX
CC   10 bp target site duplication.
CC   CDS	<3..530.
CC   [3] consensus expansion. This consensus is generated from 10
CC   sequences with ~93% identity.
XX
SQ   Sequence 4004 BP; 1306 A; 957 C; 851 G; 885 T; 5 other;
     tgaaaaataa gaggaagaaa ccattatctc ccaatactag ctctaagagg ccgaataaak        60
     atttgaagct agtctcgccc tcagcatcaa caagtatggc aatctctggc aacaggtttg       120
     ccttgctaga catggamatg gacatggatg taacaaacga aagccatgtt gaaagtcaca       180
     gggctccaaa tgaaagccct actagcgctt ctgaggctga tcagcagaac aatactaacg       240
     tcagtattga tgtaagtgac acagccaatm acccacagca taacgcaatc aataccaacg       300
     accagcttca cggtacccca aagccaccgc aaatagttgt gtgtgttact gaccttaatg       360
     atctttttga actcattatg gaggtcacta gtctagataa cgtggcagtg aaagtcaacc       420
     aaggagaaac ggccagaata tttcccaaag acagtgacac ttacagagca attgtcaaac       480
     attttgatgg tattggtatt gagttccata cctatcaatc gaaggaagag aaaccataca       540
     ggatagtagt taaggggctt caccatagca ctcttaacaa cgaaattatt gacaawttaa       600
     aaaacaaatg gctttgatgc tctgcaggta cataacccaa gaccaaggag taacaaagat       660
     ggaaaactca atatattttt cattaatata aggccatgcg caaaaattaa tgatatatgt       720
     gatatcaaaa ctctgccgac aaaaagtgag gatagaaagg atgcgcaaaa catctgaaat       780
     cgcccaatgc acacgatgtc aggaatacgg acacacagcc aaatactgcc gtcgtcaccc       840
     caattgtgca cgatgcggtg aaaatcatct caccaagcta tgcacacgtc cccatgatga       900
     acagccttcc tgtttgcact gtggagggaa tcatatggca agctacaaag gttgccaatg       960
     gtaccaggac tatctacgac gatcaatggg ctcttcaatg aagcaacagg ctcacacgca      1020
     accgtctaga cagatcagga ggaatcaaga tcgaccaaac cagaaacaac cacaaaggaa      1080
     acagcagcag cagcagcaac caactcgaca gcaacaaata cctaacattc ctagagtcaa      1140
     tactggaggc aagtcctatg cctcaatagc aaggaacggc aacgaacctg cccagcgccg      1200
     tctacatagt ttgcaagcgc aacaacagct acttaagcga atagaaaata tcaggcagca      1260
     gcatcatcca gctgacgttc aatcattatt ggaacaacag caacagcaat tttaatgcaa      1320
     caacagctgc aactacagca gcagcagcaa ttcctcttgt ggcttcagga gcagcaacgg      1380
     gaacaacaac aacaaaacaa gcaaaatagt gaacggctag aacggctgga aaaaatggtc      1440
     catgaaatgg ccagcatgat aaagcaatgg acakgggatg gatcgactcc ccagcttcat      1500
     agcaacgcct cagcctccca atgaatccac tcaaggtcct tatctggaat gttaatggca      1560
     tcgcaggaaa agccagtgaa gttgagctct tcgcgcacaa caacaatgtc gaagtgaaat      1620
     cagactaaac cgaggagaaa cagtcaaaat acacgggtac accttctatc cagcttacaa      1680
     gccatcacgt cacagtcacg gtgtcggagg agcggcggta ttcgtgagga gtactctccg      1740
     ccattttcca caaagagtaa ttgaaacgag caccatacaa atgtcttcaa taaaaattgc      1800
     cacaggtttg ggagagatgg aatatagcgc catatactgc ccaccaagaa atagaattga      1860
     agaaaggcat ttcagtgaca tactcgcttc ttgcggccaa aggtatctgg ttggtggaga      1920
     ctggaatgcg cgacattggc tgtggggaga tacctacaat tcacccaggg gccgagaact      1980
     agccgaagcc attacagcca gaggagctaa tattcccgca acaggatcac caactagata      2040
     tccatatgtg tctagtcaca cacctagttg cattgatttc gcattatacc atgggatacc      2100
     ggattctcaa acaaatatcg gccaaagctg ggatctagac tctgaccata tagccctgtt      2160
     gtaaatttgc aaacagatgg ttcttatgtc aggccaaacc ctcgattaat taccaaccgt      2220
     actgacatca tggctttcag acaacatctt gaatgctcga ttcaattaaa tccgaccttg      2280
     gactctggag tagacattga gaatgcagta gattttctaa ctgaaaatat acatagcgct      2340
     gctactgcca caactccaca catcaccgag tcacgtccca attcgttatg gcattgtttt      2400
     cacgagggag gctaaagagc tgatcagaac aaagaggtgc cttcgaagaa gagcaattcg      2460
     atcacaagat ccttgggacc gaattttgtg gagccgagca gcaaaacagc tacgtaacct      2520
     cctaagggaa ctcagaagtg aatttcttcg aaaactggct tccatggact acaccgttga      2580
     tgcgaactac tctctacgga aatgtacaaa atcactcaaa cgacaaccct ttagacaggt      2640
     acctgtccga tgtcctggtg gcgaacttgc gaacagatta tgatgattca caagccaggc      2700
     aaaccagaag ctgatcctga gtcgtatcgg ccaataagtc tcttaccctc cctgtctaac      2760
     tatgggaaag gactattgcc aatcggatta ctgccattac aagccaatgc aatatcttgc      2820
     cggatcacca attcggattt cgagagggac acggcactgt ggacaggtca cagattggtg      2880
     aagcacatca tgcaggcttt tgacgaccta gagttctcaa acgctgtctt cattgacatg      2940
     cagcaagcgt tcgataaggt gtggcacgat ggattactgt gcaaaataaa aaacctttta      3000
     cctgcaccgt actatggcct tctaaggtca tatctggaag tacgagagtt caaggtcaag      3060
     gtaagggaca catactcgtc cacctatact atgagagcag gagtgccaca gggcagtgtt      3120
     cttggtccgc tgctctactc gttgtatacc tcagatatac ccagccctac ctctcaacat      3180
     atggacgatc cttctaaggc tattattgcg acatatgcag atgacatcgc agtcatttat      3240
     aactccaaaa gttgcgtaga agctagcaat ggacttcagg ggtatctgga tactctcgca      3300
     gcttggtgca aacggtggaa tttgaaggtt aacccgttaa aaactattaa cccatgcttc      3360
     accctcaaaa tgcagatgca tatccctcca attcagcttg aaggagttac cctggagcag      3420
     ccgccacaag ctaagtatct cggcatcacc ttagacaagc gccttacctt tgggccacac      3480
     ctcaaagcta cggtaaaaaa atgtcgccac agactgcaac aactgcggtg gctcaacaat      3540
     aaaaggagca ccttgccgct gagatgcaaa agagctgtat acgtgcactg tattttgccg      3600
     atatggctct atggagtgca gatttggggg attgcagcca aatcaaatta taaacgcata      3660
     caggtactgc ccctggtacg tacgcggttc tacactccat aaggacctca aagtgcatac      3720
     agtcgaagaa cagattggaa ggcacacaag cagatacagc gacaaattgc tgagacaccg      3780
     cagcctgctc gcaagaggac tactccctgc ccaacctcta aggcgactca aacggcaagg      3840
     ttttgccaag acgattgggc gccagtaaga ccacccgcat taaaatcctc atactacgtt      3900
     atggggttcg gctctaaata acatttctat ccatgtgttg ttaaggtact aaattatgat      3960
     tgtacaggtt ctacacttaa tacaaaaaaa aaaaaaaaaa aaaa                       4004
//
ID   Helena_Ds   repbase;    DNA;    INV; 4912 BP.
XX
AC   chr3R;
XX
DT   17-DEC-2007 (Rel. 12.12, Created)
DT   19-DEC-2007 (Rel. 12.12, Last updated, Version 1)
XX
DE   The only complete copy of the non-LTR retrotransposon Helena from
DE   the complete genome of Drosophila simulans.
XX
KW   Non-LTR Retrotransposon; Transposable Element; HELENA; Helena_Ds;
KW   LINE-like; ORF1; ORF2.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4912
RA   Rebollo R., Lerat E., Lopez Kleine L., Biemont C. and Vieira C.;
RT   "Losing helena: the extinction of a drosophila line-like
RT   element.";
RL   BMC Genomics 9,  (2008).
XX
DR   droSim1; chr3R; Positions 15006433 15011344.
XX
CC   Helena belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   The Helena sequence includes two open reading frames that
CC   encode the 579-aa ORF1p (positions 294-2033) and 907-aa
CC   ORF2 (positions 2030-4753).
XX
FH   Key           Location/Qualifiers
FT   CDS           294..2033
FT                 /product="ORF1p"
FT                 /note="DNA/RNA-binding protein."
FT                 /translation="MDTNNETSNSQLRNKPIDYEEMRQVAGKSPLDIRMEL
FT                 LNQRSSCTESVNLSTITTTITFTSATCNTTSTTTAAISRPSSREKAATRLS
FT                 DAQKLLTKERKRKTNLTPNHSSKRAVRDAKLEPYPAINSNSNSNNRFAMLD
FT                 MELDETSDGIETPQVCHDVASTSCASAAPNIPNDDCVPNVTSNSPQQYTDK
FT                 QNSYKQSKPPQIVLSLTNLNDLYELITEVTSLDNLTVKVNQGETVRILPKD
FT                 SDTYRAIVNLFDNSGIEFHTYQMKEEKPHRIVVKGLHHSTLTYEIIDNFKT
FT                 YGFDVLQVHNPRSRRNREEKLNIFFINIKTCAKINDIYDINTICRQKVRIE
FT                 RMRKSSEIAQCIRCQEFGHTAKYCRRHPNCARCGENHLTKLCVLPNDQQPI
FT                 CIHCGGNHTASYKGCQFYQEYLRRSMGTVKKQQPKQAKFDKSATNQQQPQQ
FT                 KQQHAIASTPKDHTGSLSYADIARNGNTTAQPRLHNVQLKGTNIKQQHPLD
FT                 VQSILAQQQEQFMKWQQQLQQQQQQQFLSWLQQQQQEQQQQNKLNSQRLER
FT                 LENIVFEMANMLKQRTGDTSAPQLHSNALPSQ"
FT   CDS           2030..4753
FT                 /product="ORF2p"
FT                 /note="endonuclease/reverse transcriptase."
FT                 /translation="MNPLKILIWNVNGISGKAREVELFAHNNGIDILLLNE
FT                 IRLNRGNTVKIYGYSFYPAYKPSSHNHGMGGAAVLVRSSLRHFPQRVIETR
FT                 TIQMSSVKVSTGLGDMEFSAIYCPPRNRIEERHFSDILVSCGQRYFVGGDW
FT                 NARHWLWGDTYNSPRGRELAEAISARGAYILATGSPTRYPHVPSHRPTCID
FT                 FAVYHGINLDRTSISENWDLDSDHVALVATLQTEGAYVRPCSRLINSRTDL
FT                 LVFRQHLENSLQLNTVLSSKEDIENAVDSLTQNIHRAASASTPSEPEIRPR
FT                 SYGIVLTREARELIRTKRRLRRRAIRTQDPWDRILWNRAAKQLKVVLRELR
FT                 SDFFEQKLSSMDYTVDANYSLWKCTKALKRQPLRWVPVRCPGGEFAKTEVE
FT                 QANAFGFHLEDRFTPYDFATTEQIRETHQYLQMPLQMSWPIKPIRIEEILE
FT                 IIKLLPKHKAPGIDRICHATLKVLPIKAIIYIALIFNAILRIQVFPRQWKM
FT                 AAILMIHKPGKPEDDPESYRPISLLPSLSKLWERLIANRINDIIRQGNILP
FT                 DHQFGFRKGHGTIEQVHRLVKHILQAFDDCEYSNAVFIDMQQAFDKVWHVG
FT                 LLCKIKTLLPAPYFCILKSYLEERQFKITVRNSYSSIYPMRAGVPQGSVLG
FT                 PLLYSLYTADIPCPSFEHMAAPNRTLIATYADDIAVVYNSRDSREAANGLQ
FT                 EYINALAAWCKRWNLKINPLKTTNPCFTLKTLIPNTPPIRLEGVTLNQPLQ
FT                 ATYLGITLDKRLTFGPHLKNTVKKCGHRSQQLRWLMNRRSTLSMRCKRAVY
FT                 AHCIVPIWLYGIQIWGIAAKSNYNRIQVMQNRALRQITNCPWYVRNSTLHK
FT                 DLNIHTVESQIGRHTSRYSDRLLSHSSLLARRLIPARPLRRLKRQGFAKTI
FT                 GQQ"
XX
SQ   Sequence 4912 BP; 1657 A; 1095 C; 981 G; 1179 T; 0 other;
     tgagctggtc acactgagcg gttgtttata gtttttgtct gtgaatttca ctttaaattt        60
     aattcgcaaa cctgcattcg tagctgtgca aaacagcacg cattctaaca tttggactct       120
     gccttgcaga gtcggcatgt gaacatcaac aaagaacggt ggataaggtg caaaaaaatt       180
     tgcattctct gcccattggg cccctcacca cgtggcagcc gcacaaggga ggcaacaagc       240
     aacgtactta ttagaaaaaa aaaaaataaa tagaccggat tagtaactgt aaaatggata       300
     cgaacaacga aacttctaac tctcagctta gaaataagcc gattgattat gaagaaatgc       360
     ggcaagtagc tggtaagtct ccactggata tcaggatgga attattgaat caacgctctt       420
     catgcactga atctgttaac ctaagcacaa taactacgac gataacattt acaagtgcaa       480
     cttgcaatac tacatctaca acaactgcag caatcagtag gccgagctcc agagaaaaag       540
     ctgctactag attgtctgat gcgcaaaaac ttctgacgaa agagaggaag aggaagacca       600
     atttaacacc caaccatagc tctaaacgag ctgtcagaga cgcgaagctg gagccatatc       660
     cagccataaa tagtaattca aactcaaaca ataggtttgc catgctagac atggaattgg       720
     acgaaaccag tgatggcata gaaactccac aagtttgtca tgatgtcgca tccacctcgt       780
     gtgcatcggc tgctccgaat attcctaatg atgactgtgt accaaatgtg acatccaata       840
     gcccacaaca gtatactgat aagcagaatt cttataaaca atcaaaacca ccgcaaatag       900
     tactgagcct taccaatctt aatgatctct atgagctcat tacggaggtc actagcctag       960
     ataatttaac agttaaagtc aatcaagggg aaacagtgag aatattaccc aaagactctg      1020
     atacttacag agctattgtt aatctttttg ataattcggg aattgaattc catacgtacc      1080
     aaatgaagga agagaagcct cacagaatag ttgttaaggg actccaccat agcaccctaa      1140
     cctacgaaat tatcgacaac tttaaaacat atggctttga tgttctacaa gtacacaacc      1200
     caagatccag gagaaataga gaagaaaaac ttaatatatt cttcattaat ataaagacct      1260
     gtgcaaaaat taatgacata tacgatatta acacaatatg ccgacagaaa gtgcggatag      1320
     aaagaatgcg taaatcatct gaaattgcac aatgcatacg ttgtcaggaa ttcggccaca      1380
     cagctaaata ctgtcgtcgt catcccaact gtgctcgatg tggtgaaaat cacttaacca      1440
     agctatgcgt acttcccaat gatcaacagc ctatctgtat acactgtgga ggaaatcaca      1500
     cggcaagtta caagggttgc cagttttacc aggagtatct tcgacgatca atgggcactg      1560
     taaagaagca acaacctaag caagccaagt ttgataaaag tgcaacaaac caacaacaac      1620
     cccagcaaaa acagcagcat gcaatagcta gcactcccaa agatcatact gggagcttgt      1680
     cctacgcaga tattgcaaga aatggcaata caacagccca gcctcgtcta cataatgtac      1740
     aattaaaggg aactaatatt aagcagcaac acccgcttga cgttcaatca atattggcac      1800
     agcaacagga acaatttatg aagtggcagc aacagcttca acagcaacaa cagcagcaat      1860
     tcctatcgtg gctacagcag cagcaacagg agcaacaaca acaaaacaag ttgaatagtc      1920
     aacgactcga aaggctggaa aatattgttt ttgaaatggc caatatgctg aagcaacgga      1980
     ctggggatac atcggctccc caactccata gtaacgcttt accatcgcaa tgaaccctct      2040
     gaagattctt atctggaatg taaatggtat ttcaggtaaa gccagagaag tagagctctt      2100
     cgcacacaac aacggcattg acattcttct cctaaacgag atcagactca acagagggaa      2160
     cacagttaag atatatggat acagctttta tcccgcatac aaaccttcaa gccataatca      2220
     cggaatggga ggagcagcag tactggtgag aagttctctt cgtcatttcc cgcaaagagt      2280
     tattgaaacg agaactattc agatgtcttc agtcaaggtc tccaccgggc tgggagatat      2340
     ggaatttagc gcgatttact gtccaccaag aaatagaatt gaggaaaggc acttcagtga      2400
     catacttgtc tcttgtggac aaaggtattt cgttggtggg gactggaacg cccgacattg      2460
     gctatggggt gacacgtaca attcacccag aggtcgagaa ctagcagaag ccatttcagc      2520
     cagaggggct tatatccttg caacaggttc accaactaga tacccacatg tgcccagtca      2580
     cagacctacc tgcattgatt ttgctgtgta ccatgggata aacttagaca gaactagtat      2640
     ttctgaaaat tgggatctag actccgatca tgtagccctt gtggctactc tacaaacaga      2700
     aggtgcctat gttagaccat gctctcggtt aataaacagc agaactgatc tccttgtttt      2760
     cagacaacat ctggaaaact ctctccaatt aaatacggtt ctgagctcta aggaagacat      2820
     cgagaacgca gtagacagtc taacgcaaaa tatacataga gccgcttctg cttctacgcc      2880
     gtctgagccc gagatacgcc ccagaagtta tggtattgtt ctaacaagag aggccagaga      2940
     acttatcaga actaagagac gccttcgaag aagagcaatt cgaactcagg atccatggga      3000
     cagaatcttg tggaaccgag cagcaaagca actcaaagtc gtcttaaggg aactcagaag      3060
     tgatttcttt gagcaaaaat tatcctccat ggactacacc gttgatgcaa actattcgct      3120
     gtggaagtgc acaaaagccc ttaaacgaca accacttcga tgggtacccg tacgctgtcc      3180
     aggtggggaa tttgcaaaaa ctgaagtgga acaggctaat gcattcggct tccacctaga      3240
     ggatcgcttc actccttacg acttcgccac gacagaacaa ataagagaga ctcaccagta      3300
     cctacaaatg ccattgcaga tgtcttggcc tattaagcca ataaggatag aagaaatcct      3360
     tgaaataatt aaattactgc cgaagcataa agctccagga attgacagga tttgtcatgc      3420
     cacgctaaag gttttaccta taaaagcgat aatatatata gcactaatct ttaatgctat      3480
     tttaaggatc caagtgttcc caagacagtg gaaaatggct gctattttga tgatccacaa      3540
     gcctggaaag ccggaagatg atcctgagtc gtatcggcct ataagcctct taccctcact      3600
     ttctaaatta tgggagagac ttattgccaa tcggataaac gacattataa gacaaggcaa      3660
     tatcttgccg gatcatcaat ttggatttcg aaagggacac ggaactattg aacaggtcca      3720
     cagactggtg aaacacatac tacaggcttt tgacgactgc gagtactcca acgccgtctt      3780
     tatagatatg caacaagcct tcgacaaagt atggcatgtt ggattattat gcaagataaa      3840
     gacccttcta cctgcgccct acttctgtat tttaaagtca tatctagaag aaagacaatt      3900
     taaaatcacg gtgagaaata gctactcctc tatataccca atgagagctg gagtccctca      3960
     gggcagtgtt ctcggaccgc tactgtattc cttgtacact gctgatatcc cttgcccgag      4020
     tttcgaacac atggcagcac cgaacaggac tcttattgca acctatgcag atgacatcgc      4080
     agttgtatat aactctaggg acagcagaga ggcagctaac ggactacaag aatatattaa      4140
     tgctctggca gcctggtgta aacggtggaa cctaaaaata aacccactga aaacaacaaa      4200
     cccgtgcttc acgttaaaaa cgcttatccc aaacacccct ccaattcggc tagaaggagt      4260
     taccctgaat cagcccctgc aagcaacata tctaggtatc accctggata aacggctcac      4320
     ctttgggccg catctaaaaa acacagtaaa aaaatgtggc cacagatcac aacagctgag      4380
     atggctcatg aatagaagga gcactctttc gatgaggtgc aaaagagctg tgtatgcgca      4440
     ctgtatcgta ccgatatggt tatacgggat ccagatttgg ggaattgcag ccaaatcgaa      4500
     ttataatcgt atccaggtga tgcaaaatcg cgcattacga caaataacca actgcccctg      4560
     gtatgtacgt aactctacac tccataaaga cctcaatatt cacacagttg agtcacaaat      4620
     tgggagacat acaagtcgat atagtgacag attactgagc catagcagtc ttcttgcaag      4680
     acgtctcatc cccgctcgac ctctaagaag acttaaacgg caaggcttcg ccaagacaat      4740
     tgggcagcag taaaaactct tcatttatgt tcctactcca cttattttat tttatagtgt      4800
     ttggtaattg ataagaatac ttctccacac tgtgatgtta agatacaata ttatgatgta      4860
     cggattcttc acttaataaa tattaataaa aaaaaaaaaa aaaaaaaaaa aa              4912
//
ID   HELENA_RT   repbase;    DNA;    INV; 1317 BP.
XX
AC   .
XX
DT   28-FEB-2001 (Rel. 6.01, Created)
DT   01-FEB-2007 (Rel. 12.03, Last updated, Version 2)
XX
DE   Reverse transcriptase region from Helena - a consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; retrotransposon; HELENA; HELENA_RT.
XX
NM   HELENA_RT.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Petrov A.D., Lozovskaya R.E. and Hartl L.D.;
RT   "High intrinsic rate of DNA loss in Drosophila.";
RL   Nature 384(6607), 346-349 (1996).
XX
RN   [2]
RA   Petrov A.D. and Hartl L.D.;
RT   "High rate of DNA loss in the D. melanogaster and D. virilis
RT   species groups.";
RL   Mol. Biol. Evol 15(3), 201-207 (1998).
XX
RN   [3]
RP   1-1317
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
DR   [3] (Consensus)
XX
SQ   Sequence 1317 BP; 417 A; 306 C; 265 G; 327 T; 2 other;
     aaagctccag gaattgacag gatttgtcat gccacgctaa aggttttacc tataaaagcg        60
     ataatatata tagcactaat ctttaatgct attttaagga tccaagtgtt cccaagacag       120
     tggaaaatgg ctgctatttt gatgatccac aagcctggaa agccwgaaga tgatcctgag       180
     tcgtatcggc ctataagcct cttaccctcc ctttctaaat tatgggagag acttattgcc       240
     aatcggataa acgacattat aagacaaggc aatatcttgc cggatcatca atttggattt       300
     cgaaagggac acggaactat tgaacaggtc cacagactgg tgaaacacat attacaggct       360
     tttgacgact gcgagtactc caacgctgtc tttatagata tgcaacaagc cttcgacaaa       420
     gtatggcatg ttggattatt atgcaagata aagacccttc tacctgcgcc ctacttctgt       480
     attttaaagt catatctgga agaacgacaa tttaaaatca cggtgagaaa tagctactcc       540
     tctatatacc caatgagagc tggagtccca cagggcagtg ttctcggacc gctactatat       600
     tccttgtaca ctgctgatat cccttgcccg aatttcgaac acatggcagc accgaacagg       660
     rctcttattg caacctatgc agatgacatc gcagttgtat ataactctag ggacagcaga       720
     gaggcagcta acggactaca agaatatatt aatgctctgg cagcctggtg taaacggtgg       780
     aacctaaaaa taaacccact gaaaacaaca aatccatgct tcacattaaa aacgcttatc       840
     ccgaacaccc ctccaattcg gctagaagga gttaccctga atcagcccct gcaagcaaca       900
     tatctaggta tcaccctgga taaacggctc acctttgggc cgcatctcaa aaacacagta       960
     aagaaatgtg gtcacagatc acaacagctg agatggctca tgaatagaag gagcactctt      1020
     tcgatgaggt gcaaaagagc tgtgtatgcg cactgtatcg taccgatatg gttatacggg      1080
     atccagattt ggggaattgc agccaaatcg aattataatc gtatccaggt gatgcaaaat      1140
     cgcgcattac gacaaataac caactgtccc tggtatgtac gtaactctac actccataaa      1200
     gacctcaata ttcacacagt tgagacacaa attgggagac atacaagtcg atatagtgac      1260
     agattactga gccatagcag tcttcttgca agacgtctca tccccgctcg acctctg         1317
//
ID   Helitron-1N1B_BTa repbase;    DNA;    INV; 748 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-1N1B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-748
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 259-259 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 748 BP; 184 A; 141 C; 183 G; 240 T; 0 other;
     tcatatatat aagctccaag acctcctaaa tttgcatatc tggtaacgct tagttccagc        60
     gttctaccgg gccgattttc atgatttttg cggctatcga caggcaattg tctctagatg       120
     agcccgctct attcagattt tgaaaatatg acccaggttt ttttacatta cgcggtaaag       180
     ttgcgaattc tcccatttaa acaatgtaaa tttttatttt ttgtcatagt tcgtttgagc       240
     gttctactgg gccgatttcc ataatttttg cggttatcga caggtgatag tccctagatg       300
     agcccgctgt aatcagattt tggaaatatg acccagattt ttttataatt gagtatacct       360
     gggagcttag aaagggggca aaatttgaag gaaaattgaa ctaagcggga aattgtgaat       420
     cttggtctgt tagtagggtt agggtaaagg taagtgaatc gaaggtgtgc tcctttacta       480
     cagactatcc aaaagtaacg aaacgctccg ttccgttcgt tccgtttcgt ttcagtcttg       540
     gcctgaagtt ggaaataaat ggcggttttc ttatttgatt cttattggtc caatcgctcc       600
     cggccagagg gagattggac aaatgagagt cgggtatgaa aatcttttca ttttttttgg       660
     tcgttctttt gtcgaagcgg gcctaagaga gggcgaagcg ccctctgggg gttgggccgc       720
     gtagcggcca gggggcatag ccccctag                                          748
//
ID   Helitron-1N1_BTa repbase;    DNA;    INV; 850 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-1N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-850
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 257-257 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 850 BP; 223 A; 181 C; 193 G; 253 T; 0 other;
     tctatactat aagctccaag acctcctaat tttgcgaaac tggtaacgct tagttccagc        60
     gttctaccgg gccgattttc atgatttttg cggctatcga cgggcaattg tctctagata       120
     agccaactct tttcagattt tcaaaatatg gcccaggttt ttttatatta cgtggtaaag       180
     ttgcgaattc tcccatttaa acaatgtaaa tttatacttt ttgtcatagt tcgtttgagc       240
     gttctaccgg gccgatttcc atgatttttg cgtaaatcga caggtaatag gccctagatg       300
     agcccgctgt aatcagattt tggaaaaagg acccaggttt ttttaaaatc acgttataaa       360
     agtgagtgag tttacagaat gctccggtac tgctaccgct atgcgcggga ggatgcgcag       420
     tggtcgagga ggttgcgcag tagctgtgta gcctgcgcat cagctctaca cttatctaca       480
     caagattcgc acctgcaacc tcatgtcgag cggtggccga gtcgtctaag acgtcgaatg       540
     cgtccacttt gaactcggtg taggttcgat ccccgactca tgaaacctta attattacct       600
     gactatcatt gttcattgtt ttactgcaat atttcatcaa gcagtcattc caaaacgcgt       660
     ccttttaatt ttaaagtaat tttaagtaaa gtttaaaatt aaagtatacc tcatatcgta       720
     attttttagg ggaaaaataa aactaacact gataggaggg taaaaatagg gccgcgaagc       780
     ggcccattga tggcgcggag cgccttcagg gggttgggcc gcgtagcggc cagggggcgt       840
     agccccctag                                                              850
//
ID   Helitron-1N1_DSuz repbase;    DNA;    INV; 837 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-1N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-837
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 110-110 (2022).
XX
DR   [1] (Consensus)
XX
CC   93% identical to consensus.
XX
SQ   Sequence 837 BP; 269 A; 137 C; 137 G; 292 T; 2 other;
     tatacccttg cagagggtat tgtgatttca gtcagaagtt tgcaacgcat tgaaggagac        60
     gtttccgacc ccataaagta tatatattct tgatcagcat cactagacga gtcgatctag       120
     ccatgtccgt ctgtccgtcc gtttctacgc aaactagtct ctcagtttta aagctatcgg       180
     gctgaaactt tcccaaaagt cttctttctt ttgcaggtag tatataagtc ggaaccagtc       240
     ggatcggaca actatatctt atagctccca wgsgaacagt cggaaaaaaa atttaaaaaa       300
     atgatatctt tggtgttttt taacatataa cctcctacgc ttggaaataa cattttttaa       360
     ttagttctga atttcgaatt taattttatc aaaatcggac gactatatca tatagctgcc       420
     ataggaacga tcggaaaatt ggtgggaaaa taatatgaaa caaattatag cttcggtgtt       480
     ttttgacata ttatcttata ctattgggaa tatcattttt tgtattttta ggaatttcga       540
     attaaattta ataaaaatcg gacgactcta acatatagct gtcaaagaaa cggtcagaga       600
     aataatgaaa taattatttt taaaaaaatg ttgctttgtt gattttgatc gtattttctt       660
     ttactctggg atatagaata ttttaacttt tcagcattac gaatttaatt ttacacaaat       720
     atcactgaag ctagcaacaa tccttaagaa tttaacatgg tgttactaac attgattatt       780
     tcttataact gcaagggtat acaaacttcg gcttgccgaa gttaacttcc tttcttg          837
//
ID   Helitron-1N1_DVir repbase;    DNA;    INV; 519 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   31-MAR-2007 (Rel. 12.03, Last updated, Version 1)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; Helitron-1_DVir; Helitron-1N1_DVir.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-519
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 129-129 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron transposons transposed in the Drosophila virilis genome
CC   a few million years ago (numerous copies are less than 5%
CC   divergent from the consensus sequence). Helitron-1N1_DVir is a
CC   deletion derivative of the autonomous Helitron-1_DVir. These
CC   transposons are usually inserted in the TTT|TTT target sites
CC   without the target site duplications (the insertion site is
CC   marked by "|"). Different families of Helitrons constitute ~5% of
CC   the D. virilis genome.
XX
SQ   Sequence 519 BP; 147 A; 113 C; 108 G; 151 T; 0 other;
     ttataccctg aacccattaa aaatgggtat aagggtatat tgtatttgtg caaaatccaa        60
     atgtatgtaa caggcagaag gaagcatctc cgaccccata aagtatatat attcttgatc       120
     agcatcaata gccgagtcga tctagccatg tccgtctgtc tgtccgtccg tccgtccgtc       180
     cgtccgtccg tccgtccgtc cgtccgtccg tatgtatgaa cgcaaggatc tcagaaccta       240
     taagagctag agacttgaaa ttttagatgt aggtgctcct agtgcctgcg cagatcgagt       300
     ttgtttccga taatcgataa cttactccgt ttccaagcaa tcgataaaaa tcgatatcga       360
     tatcctgttt tttgggcaat tttggtaaat aataagagct agagtcacca aacttgacat       420
     atagcttcta aaatagaata tatatatgca tttgatgttg gaagaagagg gttcagggta       480
     tcccctagtc gggagctccc gactagaacc tcttacttg                              519
//
ID   Helitron-1N2_DSuz repbase;    DNA;    INV; 617 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   11-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-1N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-617
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 147-147 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus.
XX
SQ   Sequence 617 BP; 191 A; 104 C; 110 G; 212 T; 0 other;
     tatacccttg cagagggtat attgatttca gtcagaagtt tgcaacgcag tgaaggagac        60
     gtttccgacc ccataaagta tatatattct tgatcagcat gactagacga gtcgatctag       120
     ccatgtccgt ctgtccgtct gtccgtccgt ttctacgcaa actagtctct cagttttaaa       180
     gctatcgggc tgaaactttc ccaaaagtct tatatctttt gcaggtagta tataagtcgg       240
     aaccagccgg atcggacaac tatatcttat agctcccata ggaataatcg gacaaaaaaa       300
     tttaaaaaaa ttatatcttt ggtgtttttt agcatataac ctcctaagct tggaaataac       360
     attttttaat tagttttgaa ttttgaatta aattttatcg aaatcggacg actatatcat       420
     atagctgcca taggaacgat cggaaaattg gtggaaaaat aatatgaaac aaattatagc       480
     ttcggtgttt tttgacatat tatcttatac tattgggaat atcatttttt gtgttttaag       540
     aatttcgaat taaatttaat aattatagct gcaagggtat ataagcttcg gcttgccgaa       600
     gctaactttc tttcttg                                                      617
//
ID   Helitron-1_AAe repbase;    DNA;    INV; 8288 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Helitron family from Aedes aegypti.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8288
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1316-1316 (2011).
XX
DR   [2] (Consensus)
XX
CC   There are 6 sequences with >98% identity. Both termini are
CC   uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1272..5303,5273..6118)
FT                 /product="Helitron-1_AAe_1p"
FT                 /translation="MAPNKRKCIGRVQTKAKKVKEQRKQESSLTRNKRLAA
FT                 LRERARASRASETTAEREVRLKGVAFRTLRTRDKETIQCREERLKNAAERA
FT                 AAARAVETQQHRELRLQAMAQRATTSRAEETDQQRKSRLQDMALRSATSRS
FT                 EETVQQRETRLHDMALYATASREEETVQQREDRLYNQRERTVLLRTTETVE
FT                 QHATRVQEMRCMARHSRTIRHINLALEAFRYDPQKNYMEHNDVTIGKMEVV
FT                 CTYCQAKKFKNEAPGICCKNGKVNLSQLEPPPQALLDYMSGNTPESKHFLK
FT                 FIRKYNACFQMTSFGATLVVEQAGFPSTFTVQGQIYHKAGSLLPLPEQPPK
FT                 FLQLYFIGDEQMETDRRCSYISGTRRQIVQHLQQMFQEHNDLVRVFKSALD
FT                 RMPSDEFKVIIRADRRPPDEHERRFNAPQVDEVAVVVTGDAYDQRDIVIQK
FT                 RGESLQRISETHRPYDALQYPIMFPHGEDGYHFNLKQIDPTTGESTTKKVS
FT                 AMDFYAYRLMIRGDAYNHLLNCRQLFQQFVVDMYVKIESERLLYIRLNQRK
FT                 LRVDDYVHLKDAIANDGNVDNLGALVILPATFTGSPRHMHEYTQDAMTYVR
FT                 MYGRPDLFITFTCNPAWPEITEXLTNGQSVNERHDLVARVFRQKQLKLIEA
FT                 ITKGHVFGAPRCWMYTVEWQKRGLPHSHNLIWLVNKLQPTQIDDVISAELP
FT                 DPVVDPELHAVITKNMIHGPCGNLNLSSPCMRDGKCTKKYPRNFVEQTQTG
FT                 NDGYPLYRRRSTENGGMSVKLKVRNTEVEIDNRWVVPYSPLLSKMFQAHIN
FT                 VEYCNSVKSIKYVCKYVNKGSDMAVYGISSENTNDEVMQYQLGRYVSSNEA
FT                 VWRIFGFPIHERHPTVVHLSVHLENGQRVYFTPENASRFADHPPNTTLTAF
FT                 FQLCQEDPFARTLLYPEVPRYYTWDAAKKIFHRRKVGKPVLGHDIFASDAL
FT                 GRVYTVHPNNAECFFLRMLLHSIRGPRSFVELRTVNQTVCQTFREACQVLG
FT                 LLEGDRHWDDTLQEAALLCLPDQIRTLFAIILTTCAPSNPYALWEKYKEAL
FT                 SEDVLMNVRRSIPTVQITYNTDIFNKALIMLEDKCVAMANKTLLQLGLPAP
FT                 IRNEERMIDADYIRETAYNIIDLTDYVVEKESLLNSDQKIAFELIMDEVVK
FT                 QSGGVIFLNASGGTGKTFLTNLILAKIRAQGEIALAVASSGIAATLMEGGR
FT                 TAHSAFKLPLDLTRQENPTCNISKTSGKAQVLKLCKLIIWDECTMAHKKAL
FT                 EALDTTLKDIRGNNKLMGGALLLLCGDFRQTLPVIPKSTPVDEINACLKYS
FT                 AIWKHVTKVSFNIYNDWIIRVNILFLFFFRLPYFIFIFLQVTLKTNMRICL
FT                 GDEHAQTFAKQLLEIGEGRVAIGSNGYIKLAPNFCNLVSSAAELIDVIYPE
FT                 IADNYRNMNWLRERAILAAKNEDVNDMNNQILAKVPGAMMEYKSIDTVEEA
FT                 DDAVNFPPEFLNSLDPAGMPPHRLLIKEGCPIILLRNLDPPKLCNGTRMCV
FT                 RKMLANVIEAVILTGKGQGETVFIPRIPLVPSDLPFSFKRLQFPVRLAFSI
FT                 TINKSQGQSIEHCGVDLRSPCFSHGQLYVACSRVGSPKNLNILAPSDETKN
FT                 VVYKQVLS"
XX
SQ   Sequence 8288 BP; 2775 A; 1518 C; 1700 G; 2289 T; 6 other;
     atggcagccg tgaaatagtg gatcaaagac tgaaatcatg taaaatggat atctttcaat        60
     cggtgtttat ataatggaaa ttaatcttca tctggaaatc caagatggct taccttaatt       120
     taaatttgcg actctgaatt aatgcctgaa attatgtaaa tcctagaaag agactgaact       180
     atgaaaatcc tagaaagagt aaaaatcatg cggaataaac attcttctat cgagttcgat       240
     gatataagat cacaaaaata aatatatagc ggcatttgga aatccgagat aatggaccgg       300
     gattcaaaat ggaagccgta ggataaagtt tttttttcga ttcacgatgt tattttggat       360
     tcacgaaatc aatatttggc gcccaagata gagaatctga attctaaatg gctttcatga       420
     cagtgaattg agtcctgaaa ccatacaaaa tggatggaac atggcggccg tgaaataatg       480
     aatgaaagcc tggaaccatg gtgaaaggat taatttcctt cggatttaga tagtatatca       540
     tgaacatgaa tatttggtcg atcacattct atttaaattt gacatggttt ttcagtgtaa       600
     ttaaaaaaaa aaataaagtc aaaattaagt gaacaaactt taaaaatata aaataaaaaa       660
     caacacaaag tgagataaac tcatttcaat tcgaataatc gatagagatg gaagatagag       720
     atagacatag agaagataga gatggaaagc acttttatta ggtactagct aacattaccc       780
     ggctttacga tcattgtttg aagatttcaa tcgcgattaa gcgtacctac tatatgttga       840
     agatcaggta cttcacacac cctgcagtgg agatgtcaat tggtaagaat tgtagaggta       900
     acgcgtagcg gataatattg tacccagaca tgaaataaaa gagaggagct ggcagatagc       960
     ggtatcagtc agtagcctgt ggagcagaag ccttgagttt atgtttatta ttttcaacac      1020
     tatattccat tacaatcaat cagtttcgtg ttctatcaaa aaagtgtctt tagtaaagca      1080
     aaagtgagaa ttacggagat aaagataata attatcgaag gaagtgagta aaagtgttaa      1140
     ttctattcca ttaattaatt actaattcca ttagtaatga tataaaccct catattgatt      1200
     catttattaa caaaatttag ttttcagatt aaatagaatt tattcaagtg ttattctctg      1260
     caatcgatac aatggctccg aataaacgaa agtgcattgg tcgagtgcaa acaaaagcga      1320
     aaaaagtgaa agaacagcgc aaacaagaaa gttcattgac aaggaataaa cgtcttgccg      1380
     cattgcgtga acgggcaagg gcttctagag cttcagaaac gacagcagaa cgggaggtca      1440
     ggttgaaagg tgttgcgttc agaacgttaa gaactagaga taaggaaaca attcagtgtc      1500
     gcgaagaacg gcttaaaaat gcggcagaaa gagctgcggc agcaagagct gtggagacac      1560
     aacaacatcg tgaattacga ctgcaggcta tggcacagag agccacgact tcgagagcag      1620
     aagagacaga tcaacaacgt aaatcccgac tacaagatat ggccctgcga tccgcgacat      1680
     ctagatcaga agaaacagta caacaacgtg aaacacggct gcatgacatg gccctatatg      1740
     caacggcatc cagagaagaa gagactgttc aacagcgtga agatcgtcta tacaaccaaa      1800
     gagagaggac agtgcttttg agaacaacag aaactgtcga gcagcatgca actcgagtac      1860
     aggaaatgag gtgtatggca agacactcac gaaccatacg acatatcaat ctggcattgg      1920
     aagcgtttcg ttatgatcca cagaagaact acatggaaca taatgacgta actataggaa      1980
     aaatggaggt agtttgcacc tattgccaag ctaagaagtt caaaaatgaa gctccgggaa      2040
     tttgttgtaa aaatggaaaa gtgaatctta gccagttaga accaccgcca caagcacttt      2100
     tggactacat gtcaggaaat acgccagaat ccaaacattt tctcaaattc ataagaaaat      2160
     acaatgcatg ctttcaaatg acatcctttg gcgcaacatt agttgttgaa caagctggtt      2220
     ttccatcgac attcacagtt caaggacaga tttatcataa ggctggatca ttgcttccgt      2280
     taccagagca gccgccaaag tttctgcagc tgtatttcat cggagatgaa caaatggaaa      2340
     cagatcgcag atgcagctac atatcaggaa ctagacgaca gatagtgcaa catttgcaac      2400
     agatgtttca ggagcacaac gatttggtca gagtttttaa atctgcattg gatcgtatgc      2460
     cttcggatga attcaaggtg atcataaggg ctgatcgaag acctcctgat gaacatgagc      2520
     gtcgcttcaa tgcaccacaa gtagatgagg ttgcagttgt tgtaactggt gatgcttatg      2580
     atcaacgtga tatcgtcatt caaaaacgag gagaatcatt acaaaggatt tcggaaactc      2640
     atagacccta cgatgctttg cagtacccaa taatgttccc tcatggtgaa gatggatatc      2700
     acttcaatct aaaacaaatc gatccgacga cgggtgaatc taccaccaaa aaagtttcag      2760
     ccatggattt ttatgcctac cggctaatga ttcggggcga tgcttacaac cacttactca      2820
     attgcaggca actattccaa cagttcgtcg ttgatatgta cgtcaaaatc gaaagtgaac      2880
     gccttcttta cattcgcttg aatcaacgaa aactaagagt tgatgactat gtccacctca      2940
     aggatgcaat agcgaacgat ggtaacgttg acaaccttgg cgcgttagtt attctgccag      3000
     ctacatttac aggtagccct agacatatgc acgaatacac tcaagatgcc atgacgtacg      3060
     tcaggatgta tgggagacct gatctgttca ttaccttcac atgcaaccca gcttggcctg      3120
     agatcacgga gwtgcttacc aatggacaat cagtaaacga acgtcacgat ttggtggcga      3180
     gagttttcag acaaaagcaa ctaaaactta ttgaagccat aacgaagggt catgtttttg      3240
     gagcgccaag gtgttggatg tatacagttg aatggcaaaa gcgaggattg ccacattctc      3300
     acaatttgat atggttggta aacaaacttc aaccaacaca aatcgatgac gtcatatccg      3360
     ctgagctacc tgatccggtw gtagatcctg aacttcatgc tgttataaca aaaaatatga      3420
     tccacggtcc atgcggcaac ctcaatttaa gttcaccatg tatgagagac ggaaaatgta      3480
     ccaaaaaata tcccagaaat ttcgttgaac aaactcaaac tggaaacgat ggctatccat      3540
     tatatagacg acgtagtaca gaaaatggtg gaatgtcggt gaaattgaaa gtacgcaata      3600
     cagaagtaga aattgataat agatgggttg taccatattc gccattgctg tcgaaaatgt      3660
     tccaagcaca catcaacgtg gaatactgta acagtgtaaa atccattaaa tacgtwtgca      3720
     agtacgtgaa taagggaagc gatatggctg tttatggaat aagcagtgaa aacacaaatg      3780
     acgaagtaat gcagtatcaa ttgggaagat acgttagtag taacgaagca gtatggcgaa      3840
     tttttgggtt tccgatmcat gaaagacatc ctactgttgt tcatctcagc gttcatttgg      3900
     aaaacggcca gcgagtttac ttcacacctg agaatgcttc tagatttgct gatcatccgc      3960
     caaatacaac attgactgca tttttccagc tatgtcaaga agatcctttt gcaagaactt      4020
     tgttgtatcc tgaagttcca cgttactata cgtgggacgc agcgaagaag attttccaca      4080
     ggaggaaagt gggaaagccc gttcttggac atgatatctt tgcaagtgac gctttgggtc      4140
     gagtttatac cgttcatccc aacaatgctg aatgtttttt tctgaggatg cttctacatt      4200
     cgattcgagg accaaggtct ttcgtggaac tcagaaccgt aaaccaaaca gtgtgtcaaa      4260
     catttcgaga ggcctgccag gtgttaggat tgttggaagg tgatcggcat tgggatgata      4320
     cattgcaaga agctgcatta ttgtgccttc cagatcaaat aagaactctt tttgccataa      4380
     tattgaccac atgtgctcca tccaacccat atgcattgtg ggaaaaatat aaagaggcac      4440
     ttagtgaaga tgtactcatg aacgtccgta gatcaattcc cacagtacaa atcacgtata      4500
     atacagatat tttcaacaaa gctctgatca tgcttgagga taaatgtgtg gccatggcta      4560
     ataaaacgct gttacagctt ggtttgcctg caccgatacg aaacgaagaa agaatgatag      4620
     atgcagatta catacgtgaa acagcctaca atattataga tctaacagac tacgtcgttg      4680
     aaaaggaatc attgctgaat tcagatcaga aaatagcttt cgaactgatc atggatgaag      4740
     tagtaaagca aagcggtggt gttatatttt tgaatgcttc tggaggcacc ggcaaaacat      4800
     ttttgaccaa cttgattctc gcaaaaatca gagcccaagg agaaatcgct cttgcagtag      4860
     cgtcttccgg aatagcggca acgttgatgg aaggaggcag gactgctcat tctgcgttca      4920
     agctaccact tgatttaacc aggcaggaaa accctacctg taatataagc aaaacaagcg      4980
     gtaaggcaca agtgctcaaa ttgtgcaagc tgatcatatg ggatgaatgt actatggctc      5040
     ataaaaaagc tctagaagcc ctggacacca cattgaaaga catacgcggt aataataaat      5100
     taatgggagg agcgctgtta ctgctgtgtg gagactttcg tcaaacgcta cccgtcattc      5160
     cgaagtctac tcccgttgat gagattaatg cttgcttgaa gtattcagct atatggaaac      5220
     atgttaccaa ggtaagtttt aatatatata atgactggat tatacgagtt aatattttat      5280
     ttttattttt cttcaggtta ccttgaaaac aaatatgaga atttgtttgg gcgatgaaca      5340
     tgctcaaaca ttcgccaaac aacttctgga aatcggagaa ggccgagttg caattggttc      5400
     gaatgggtac atcaaattgg cacctaattt ttgtaacctg gtgtcatctg cagcagaact      5460
     gatagatgtg atctatccag aaattgctga caactatcgt aatatgaact ggttgcggga      5520
     aagggcaatc cttgcagcca aaaatgaaga cgtcaacgac atgaataatc aaatacttgc      5580
     caaggttcca ggtgcaatga tggaatataa atcaatcgac actgttgaag aagcggatga      5640
     tgctgtcaat ttcccaccgg aattcctgaa ttcgcttgat cctgctggaa tgccaccaca      5700
     ccgtctactt atcaaagaag gatgtcccat catactgctg cgaaatcttg atcctcctaa      5760
     actgtgtaac ggaacgagaa tgtgtgtgag aaagatgcta gctaatgtta tagaagcagt      5820
     catcctaaca ggaaaaggac aaggtgaaac tgttttcatt ccaaggatac cactggtgcc      5880
     ttcagatctt ccattttctt tcaaaagact gcaatttcca gtgaggcttg cgttctcgat      5940
     aacaatcaat aaatcgcagg gtcagtcgat cgagcactgt ggggtggatt taaggtcccc      6000
     atgtttttct catggtcaac tttacgttgc atgttcgagg gttggttcac cgaaaaattt      6060
     gaacattctt gccccaagtg atgaaacgaa gaacgtggtt tacaagcaag ttttgtcttg      6120
     aaggcagaag aaattattgg cattgaatgt gttgacgtga aattcgaggt aaaagtgcat      6180
     aataaactgt aggggaaagt gccatataaa atgtagataa gaaataaaaa gtgaaataaa      6240
     agtcatattc aaatggttaa catgaatttc attatgaagg ctgtgtattt tttttaatat      6300
     aaatcttaag atatttacta tgattgacaa aataccaaga agagaacatc tatcgtaagt      6360
     ttagtaaaat gagtttaatt tcaagctcat gtaaatctat aacacattac ggagtaagag      6420
     gaaaatggct attttttaca aggagtaaaa ctgtagagct gttcacagtg ttaaaggagt      6480
     catatgcaat cttcagtggc gaaaaaaggt gttggttaca aaagcagtta tgctcttttt      6540
     aaaatgttgc agaaatgaaa ttaaaaaaaa aaaaagaatt gccctgcaaa aaagggtttt      6600
     tttgtttgca catagtaaca aacgctaaaa atgatattgc actccttgat ttgattatcg      6660
     acagtatccg cttatcttta catttccacc ttctaaaatt ttgactacgt atgcacaaac      6720
     ttggagcaga aaaaaataca tttttaacac ttccggccga aacaatttta gttcaagtca      6780
     ttttactacg tatgattttt ttgtggcgac acgtcattac cgttaaaaaa tttatacgac      6840
     agatccgctt tacggataga gaaactgaag cagcagaatg ccgccgtagt cttattttcc      6900
     aacgagtgca agtttttata cgtgagtcac acatcacaca atctataaca caagtactga      6960
     gaaaaaatga tctgtttata aaattatact atgttattac ttacagttct acatggatca      7020
     aattttgcat ttgttagttg gttgaatgac cggaataaca tatcttatat cacaataact      7080
     tttgtagaaa gaatgacatc caaagtctat cattaatttc cttttagttt attctccttc      7140
     ttggcatttc gtccccattg gtatagaggc tgcttttcag ccacaacacg atagtattgc      7200
     ttcgttagag cgtattacac cgagatacct taagcttcag gggcgaagcc tcatgaagac      7260
     ccgtattccg aagtgttagt gttgcatcaa atcgattgta ggcaaatgtc cttgcaagcg      7320
     ttcgcccgct taatgcaaaa aagattgttt tccctttttt taggtccgac gagcgatagc      7380
     gagtaaggac agcaagcgtc tgcccggtaa aatgcaatca tagttttaat cgacagttat      7440
     ttgtaaaaca ctacaaatca ctcaactggg aacaacttca gttctcaaaa attaaataaa      7500
     acttagaatt cttatagtga ttatgttatg accaatattt atatttttat tctgagcaaa      7560
     tttgctcctt tcttcttctt ggtattagtt tgcatctcag cctaatgttt tatgaatgct      7620
     tgcgcattcc ttaaccgagt tgctaaagtt gcatgttttt cactcttata tcatgtaaca      7680
     ggtacaataa tactttattc ccataaaagt cccaaaaatt tcttttaaaa aagattcggg      7740
     accatccgga atcgaaccta ggttacttct tcaaagcttt gctttacagc cccgggcgtt      7800
     accacatggc tacggawgaa ctcatttcac acaataggga tcgcccatat ataacgccta      7860
     tgtacctact gctatcctat catgcaatag aatgtcggtt ccagagacac attactcgcc      7920
     aatcgcaaga tttgtgaaaa gcttaatgta tagaagggga tgcttaatgt atagaagaga      7980
     tgctccaaaa agatctcaac atattttatt ttgtacaacc atgtgaaaag gccgcttttc      8040
     gtacacagca tcagcgcggt ggttttggcg cagtgagatt gcgtaacaag caaaatgtta      8100
     agtttacaat caattccaga aacggctgct gttctttttg gtatgtaatg caataagcat      8160
     gaagcagcag aaatatttag tgtaattaat taaaagcttt tacagaaatt acgactaaaa      8220
     attgaagtga ctccaacatc aaattacatc ccgagcaagg ccgggtaata tcagctagta      8280
     atawtata                                                               8288
//
ID   Helitron-1_AEc repbase;    DNA;    INV; 7807 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-7807
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 541-541 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           901..1767
FT                 /product="Helitron-1_AEc_1p"
FT                 /translation="MDKLLEIFNDLKNKARCYPRNLTDVSLDEEKIFSQNY
FT                 EAFKVMKKRLLDLPRLPCISCEKLCVSRDVSKLEKLRKTVDGPFWKDLMAY
FT                 VTEHNTDTGFICKLCLSKFHRGVLPPACILNNLAVKPLPDVLSDFNDYEEM
FT                 LIKRVSSFQVVQTMGCVSNKHMPHRQMIRKVKDRTFHLPLPLQETLDKVCP
FT                 PEDPINLNRELHILVRGIPKRSKVVWENLVDINKVYKALQWSKDHNPXYSE
FT                 IRLPASSDDLINDKLQETEYRIVGDGSDSDEIDEVVENTVQHNKDNKK"
FT   CDS           3417..6050
FT                 /product="Helitron-1_AEc_2p"
FT                 /translation="MTKSNVTNLYRVYLKKKRKKCYLINHYRFNVKTEPEK
FT                 YFYSLLLLFKPWRDLSEIKGAYETYADAFKNSASALTKAMKYHERLEEIQS
FT                 AFERVAELIEKRENDLKTADRDKFDDNELDCNPIEADDAMKDLIDFGKIDA
FT                 PIDLSQMMSRLNEDQKRVFDRVCQVLQNKNQILRLYVSGEGGTGKSFLIET
FT                 IKHWIRIHLKKATAISAPTGIAAFNIDGLTIHRMFQLPVTHESTAKYTHLS
FT                 DMVLKTLRDELKTVELFIIDEVSMISNVTFMFINLRLCEIFDTTDTDDGFF
FT                 GRKHILLFGDLLQLPPVKEQSPFVKMSRSEIHKYLGTMGGSDLWRLFDYDE
FT                 LLINMRQRCDNTYRDILSRIRIGLVTDSDINVLQSRKIHFKGSSCDERLNE
FT                 LCTYMNQLPVDTICLLPTCYLCKVLNTAMLDKIDGDEIVLIAEDDVDCAPA
FT                 MKKRVHKILEDKDDKVSETAGIERVIAIKIGAKVMIRRNIDVTLGLVNGTI
FT                 GNVVAVNRSVDGNRIDSIKIVISDNKEITITKVDIKFEVFHKMVVHRKQFP
FT                 LSLSYGITIHKSQGITCKNAMMDLGTSVFSDGQAYVGLSRVSTLEGLHLIN
FT                 FNPASVKANSGAIVEYNRLRSVFKAQLPQIHSSEKKAVKIHDCRWAIPNII
FT                 DDVQNYGCEEPESIVTWKIYGLCNDDHVSCYANVILQCAFHCVRIRQQILK
FT                 NKVSNALTDAICAYAERKCCNILAVRRSVGERFEERTQQDVSEFFTALMST
FT                 YSEINDVLELELKHVTSCSNAKCNYNVTTLEKSCLLILPIQSTLKRKKGVT
FT                 LQTLIDLEFSKRETINGNCNECKGTVLKKKTVIESTLSVLVIQLNLYTFLN
FT                 GASKKIIDNRRHRRVLSRLIKKSTR"
XX
SQ   Sequence 7807 BP; 2493 A; 1418 C; 1700 G; 2192 T; 4 other;
     atcatcgcct acctgctaaa aaactccccc tattcagcac ctccgcaaga tcacattggg        60
     cacacctcgg aaccgcctac ccggaatttc atcaggttgc anccaagtcg tggagtatac       120
     gctcccacct ccatggtccg gtatacgact taaagctaga atcctatcct atattatatt       180
     aaatactatc ctaaatatgt acattatata tacattttta cacatgattg tcgtcagacc       240
     ccagacaggc ccgagctaaa agagcccttt gcctcttcag ggcctgacgc tcccactcgg       300
     cccgctcctt cttgcgcatg acgacctcgc agaaatccgc gagggccgtc caacacgcag       360
     cggagcacat agccgccctg acaatggagc cgtatgtcct gtcaaggaca tcgagcccca       420
     accgctcaaa aagtgacgtc ctctccgcgg cccaagatgg gcaaaacaac agcgtgtgca       480
     tcgccgtatc cgcagtcgta tgacaatgcg cacaaatcgg cgacgcgtta cgctgtatct       540
     caaaaaggta ggcctcaaag cacccatgac ccgtcaaaat ctgggtcatg cggattgtat       600
     gaatatactg aaaataaaga atgggggagg gggccctcca tcgcccactc tcgtgagaac       660
     gcaatcatat tttaatattg ttctgtttca cataattgtt ccgtttcacg tgcgagtacc       720
     agattaggac atcctccgga atgctatgca aatcctaatc tgtgcaagtc gtacattgca       780
     acgataagca ctttatcgcc tcattttcct ttcgtgagga atattcgaag aaatgtctac       840
     aaattgatag gcaattataa aaagtttcgt cagttgtttt cggctttgag attcgtcaat       900
     atggataaat tgcttgaaat tttcaatgat ttaaagaata aagcaagatg ttatccaaga       960
     aatttaacgg atgttagttt ggacgaggaa aagattttct cgcaaaatta cgaagcgttt      1020
     aaagttatga aaaagcgatt gttggatcta ccacgtctcc cttgtatctc atgcgaaaaa      1080
     ttatgtgtga gtagagacgt ttctaagctt gagaagttga ggaaaacagt ggacggacct      1140
     ttttggaaag acctgatggc ctacgtaaca gaacacaata ccgatactgg attcatttgt      1200
     aagctttgtt tgagcaaatt tcacagaggc gtgttgcctc ctgcttgcat tttgaataat      1260
     cttgccgtaa aaccattacc agatgtttta tcggatttca atgattacga agaaatgtta      1320
     atcaagagag tgagcagctt ccaagtagtg caaacgatgg gttgtgtttc gaacaaacat      1380
     atgccgcaca gacaaatgat ccgcaaagta aaagatagaa catttcattt gcctctgcct      1440
     ttacaagaaa cattggataa ggtatgtcct ccggaagatc ctataaattt gaatcgcgag      1500
     ttgcacatcc tcgttcgagg tatacccaaa aggtctaaag ttgtttggga aaatttggtg      1560
     gatattaata aagtgtataa ggctttacaa tggtcgaaag accataatcc tcantactcg      1620
     gaaattcgtc ttccagcgtc gtctgacgat cttataaatg ataagttgca agaaacagaa      1680
     tatcggatcg tcggtgacgg aagcgacagt gatgaaatag acgaggtggt tgagaacact      1740
     gtacagcaca acaaagataa taagaaataa atgatcaagc cgttttaaaa cgtaaggctt      1800
     tcctcacgca aatcactaaa gattcgggta ttaatgatca gtatacaata tacccaatgc      1860
     acgcgaaaag aatcgataac gaatctgcat tcaagcttta tcgaatgttg aaaattgaag      1920
     atgttccaat ggataatcgt tataatatat ctggatgtca tgtgtttccc tgatttatat      1980
     cccgagggtg tcaatggaca acgngaagat agaaactttg cattgccgga ttatttattt      2040
     gtcagaacgc gattgatgtc gaaacacagt agnttcaggt tgaatctaca gtatctgttc      2100
     tttcttctca atgatgctaa ttaccgacaa ttgaaaaatg gtgtctatta tactatgatg      2160
     gttgctaacc cacgagagag atacactgct ggtagatact tgaatgaatt gaaagacgaa      2220
     caattggaat cgaattgaat gagtattttt gcaaaactga gaaatacgga tcaattttgg      2280
     cgacaaccgt ccaataatgt caaatgcatg actctgcatt atggtccggc gacgtggttt      2340
     ttaactttga gtcctagtga atggaaatgg tccgatttgg gtgaatattt acgagacatg      2400
     aatcctgata aacagaagtt gggcattagc gaactaatcg catacgatcc tgtaagtacg      2460
     tctagattca tgtgtataaa atttaaagcc acgattgatt ttatttgttc gtccgataac      2520
     ccaataggag aggtcattca ctatttctgg cgactggaat atcaaagtag aggtatccag      2580
     cacgtgcatt gtatgatttg gataaaagat gctccagtgc taggaaaatc gccggatgaa      2640
     gaagttgttg cgtttattcg aaaatacgtg acgtgcgaaa ttccagatga aaacgtttcg      2700
     ccaacgttgt acgaaacggt tataagtgat cagaatcata aacataactc gtattgcatg      2760
     cgtacgaaaa aaaaccgaaa cgaatattta cagaaagtgt cggttcgatt ttcctcggcc      2820
     agttactgac aatttcgttt taagagacgt catcacttcg atagtgggta gaaaaacttt      2880
     acgcagtaag agcagattgt acgatcttcc tcgcaagaag tcggaaaggt ttatcaatga      2940
     ttataatccg gctatcaagt tagcctggga ggggaatatg gacatacaat ttattggaga      3000
     aaaatcagag tttttaaact cgtacttaac aaaatacacg acaaagtcgg agaaatgcaa      3060
     tatagacttt gcaatgatag attccaataa gcccttggca tcgaaactgt ggaattttgc      3120
     gatgcgttca ttgaataaca gagaatgcgg tgctttagaa gctgcggaca cactgctagg      3180
     gaatcccttg tatggtacag acagtgatac cattgtcaaa tggattgacg ttaatgagat      3240
     gagaaacaga aaagttaaaa catttaatga aattaaagct ctcgatgaaa attctacgaa      3300
     tatttattgt ccgtcgctca tcgatgatta ctatccaagc agacctaagg aattagaatc      3360
     attgaatttg tacgattttg ccagattttg ggaaattacg agacagatgc caaaaaatga      3420
     cgaagtcgaa tgttacaaac ttgtatcggg tttatttaaa aaaaaaacga aaaaagtgtt      3480
     atttaattaa ccattatcga tttaatgtaa aaactgaacc cgaaaaatac ttttactcgc      3540
     tgcttctttt gtttaaaccg tggagagatt tgagtgaaat caaaggtgca tacgagactt      3600
     acgcggatgc ctttaagaat tcagcgtctg ctttgacgaa ggcgatgaaa tatcacgaaa      3660
     ggctcgaaga aatacagtca gcttttgagc gcgttgctga attaatcgag aagcgcgaaa      3720
     atgatctgaa aacagcagat agagacaaat tcgatgacaa tgaactggat tgcaatccga      3780
     tagaagctga cgacgcgatg aaagatctga tagattttgg taagattgac gccccgattg      3840
     atttatcgca aatgatgtcg cgattgaacg aagaccagaa aagagtcttc gatagagtat      3900
     gtcaagtttt acaaaataaa aatcagattc tgcgactgta cgtaagtggc gagggtggta      3960
     caggaaaaag ttttcttatt gaaacgatta aacattggat cagaatacat ttaaaaaaag      4020
     cgactgccat atctgctccc acgggtatcg cggcattcaa tatcgatggc ttgacgatcc      4080
     atagaatgtt tcagctaccc gtcacccatg aatctacggc aaaatatacg cacttgtcag      4140
     acatggtttt gaaaactttg agagacgaat taaagactgt cgaattattt ataatcgatg      4200
     aagtatccat gatttcgaat gtgacattta tgtttatcaa tctacgatta tgtgaaatct      4260
     ttgatacgac agatacagat gatggtttct ttggcagaaa acacattctt ctgtttggag      4320
     acttgttgca gcttccccct gtaaaagaac aatctccgtt cgtgaaaatg tctcgatcag      4380
     aaattcacaa gtatttaggt accatgggtg gatctgattt gtggagattg ttcgattacg      4440
     acgaactctt gattaatatg cgacaaagat gcgacaacac atatcgtgat atactttcta      4500
     gaatacgaat aggtttggta acggattctg atatcaatgt tcttcagtcg agaaaaatcc      4560
     atttcaaagg aagtagttgc gacgaaagat tgaatgaact ttgcacttat atgaatcaat      4620
     taccggttga tacaatatgt ttattaccca cgtgttattt gtgcaaggtt ttgaacacgg      4680
     caatgctcga taaaattgac ggtgatgaaa ttgtactgat agcagaagat gatgtcgatt      4740
     gtgctccagc aatgaaaaaa agagtgcaca aaattttgga agacaaagat gacaaagttt      4800
     cggaaacagc tggcattgaa agagtaatag cgattaaaat tggcgctaaa gtgatgattc      4860
     gacgaaacat tgatgtaact ttgggacttg tcaatggaac gataggcaat gtagttgcag      4920
     ttaatcgctc tgttgacgga aatcgtattg attccattaa aatagttatt tcggataaca      4980
     aagaaatcac aataacgaaa gtagatatta aattcgaagt atttcacaaa atggtggtac      5040
     atcggaaaca atttccattg tctctcagtt atggaataac tatacacaaa agtcaaggaa      5100
     ttacgtgtaa aaatgcaatg atggatctag gaacgagtgt gttcagtgat ggtcaagcct      5160
     atgtaggttt gtcacgagtg agtacactgg aaggcctaca tttgataaat tttaatccgg      5220
     catccgttaa agcaaactcg ggagccattg tagaatataa tcgactgaga tctgtgttca      5280
     aagctcagct accacaaatc cattcgtccg agaaaaaggc tgtgaaaatt cacgactgtc      5340
     gatgggccat acctaatatc attgatgatg tacagaatta tggttgcgag gaaccagaaa      5400
     gtatagttac atggaaaata tacggcctct gcaatgacga tcatgtttcg tgttacgcta      5460
     atgtaatatt gcaatgtgcg tttcattgtg tacgtatcag gcaacaaata ctgaaaaata      5520
     aagtatcgaa cgcattgact gatgctatct gcgcgtatgc tgagcgtaag tgttgcaata      5580
     ttctagcggt tagaagatct gtcggagaac gcttcgaaga acgaacacaa caagatgttt      5640
     cggaattttt cacggctcta atgtcgacgt attccgaaat caatgatgta ttagaactcg      5700
     aattgaagca cgtaacatct tgttcaaatg ccaaatgtaa ttacaatgta actacgctgg      5760
     aaaagagttg tttgctaata ttacctatac agtcgacatt aaaaaggaaa aaaggtgtca      5820
     ctctgcaaac tttgattgat ttagaatttt cgaaacggga aacgataaat ggcaattgta      5880
     acgaatgtaa gggtaccgtt ctgaaaaaga aaaccgtaat cgaatcgact ttatccgtct      5940
     tagtaataca gctcaattta tacacttttc taaacggtgc ttctaaaaaa attatcgaca      6000
     atcgacgcca ccgacgagta ctgtcacgat taataaaaaa aagtacaaga taataagcgc      6060
     tatatttcac gagggcgaag aaatgaatcg tggtcactac acgtgtatgt tgagagcaga      6120
     caaaaagtcg gaatggtgtt actctaatga tttacaagtt atcaagaaga aatggcccaa      6180
     aggagcacaa ggggcataca tgttgttctt cgagcagatt aagtaagttt ggaaataact      6240
     tttacatata atgacacttt cttggaatag aacggaattc ttctggtacg tttacgtgaa      6300
     ccttaataaa ctattgaggt ttataattaa attttatttt cagaatattg aaacaattaa      6360
     tcgtctgctt cggcgctgta taagggctgc cgtaagcgct gaaataaagc atcggttgct      6420
     ccggcgccgt ataaacgctg cattaaaaca tcgactgctc tagcactgta taagggttgc      6480
     cgtaagcgcg gaaataacac atcggctgct ctgacgctgt atgtaggctg ccgtaagcgc      6540
     cgcattaaaa cgaatgcaat aaagttctgg cttgccctag gtatcgatat attactatga      6600
     ataacaaaaa tttcttatcg tagtcgaaga acttcatgat atttcagagt attattaaga      6660
     aatgaatctc tatgtcaaag atcgtgttaa aatcggagag acgaagaaaa tgtggttgcg      6720
     ttctcacgag aatgggcgat ggaggggccc attctttatt tttagtatat tcatacaatc      6780
     cgcacgaccc agattttaac gggtcatggg tgctttgagg cctatctttt tgagatacag      6840
     cgtaacgcgt cgccgatttg tgcgcatcgt cgtgcgactg cggatacggc gatgcacacg      6900
     ctgttgtttt gcccgtcttg ggccgcggag aggacgtcac tttttgagcg gttggggctc      6960
     gatgtccttg acaggacata cggctccatt gtcagggcgg ctatgtgctc cgctgcgtgt      7020
     tggacggccc tcgcggattt ctgcgaggcc gtcatgcgca agaaggagcg ggccgagtgg      7080
     gagcgtcagg ccctgaagca tatttaatat aatataggat aggattctag ctttaagtag      7140
     tataccggac catggaggtg ggagcgtata ctccacgact tgggtgcacc ctgatgaaat      7200
     gccgggtagg cggttccgag gtgtgcccaa tgtggtcttg cggaggtgct gaatagggga      7260
     agttttttag caggtaggcg atgatgtccg ctgtccttcc ttataggagg gacgcagact      7320
     tatcgaatct tgcacaatca ggagaccggc ttctgggtgt cttcccctca tccggttagg      7380
     ttctccttcg ggagcatccc ggatgagggg ctatgaagac ttttctcctc ctcgcaaaca      7440
     aaaaaaaact atattcatac aatattaaaa attcattctg ttgcaatcga aataaatatt      7500
     aataaaattg tgttaaaatc ggagagacga agaaaatatg gttgcgtcct cacgagaatg      7560
     ggcgatggag gggcccattc tttattttaa gtatattcat agaatattaa gaattcattc      7620
     tgttgcaatt gaaataaata tgtaatgtat ggtcaatatt tattataatt ataagttaca      7680
     tatatactat taaatataat atatatgcat atgatatata tttatatgta tataccatat      7740
     gtttcaattt tttctaactg tattgcatga attgtagctt acagaaggtt acgtgataag      7800
     aaaatat                                                                7807
//
ID   Helitron-1_AP repbase;    DNA;    INV; 2907 BP.
XX
AC   Contig2609;
XX
DT   21-FEB-2009 (Rel. 14.02, Created)
DT   27-FEB-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   Helitron-type DNA transposon family.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_AP.
XX
NM   Helitron-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2907
RA   Jurka J.;
RT   "Helitron-type DNA transposons from pea aphid.";
RL   Repbase Reports 9(2), 466-466 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project. It can be incompletw.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..2898
FT                 /product="Helitron-1_AP_1p"
FT                 /translation="MIHGPCGNSNNRSPCMESGSCSKKYPRPFIQETQTGD
FT                 DGYPKYRRRAPENGGFTVEINGKTLDNRWVVPYNPVLLRTFGAHINVEYCN
FT                 SVKSIKYICKYITKGSDQAAFGFENDNDEVKLYESDRYISSSEAVWRILAF
FT                 PIHERFPTVFHLSVHLENSQRVYFNPNDSSRLTDMINNPPKTTLLAFFDLC
FT                 KTDDFAKTLLYVDVPSYYVWKNNRFERRKRGINVIGWPGIKRDQALGRVYT
FT                 IHPNNTDCYYLRLLLHEIRGPTSFLKLKTVNGTIQPTYQTACKALGLLEYE
FT                 RHWDTTMEEAVLCGSPFKLRELFAIMLIFCQLSDAISLWEKYKDSLSEDIR
FT                 HRVELDIQPENVNSIINEVYNKCLVTIEDTVLSLGGTFLQHYGLPQPSRCE
FT                 AVLQNKDYLREINYDSNILAQYINFNENLLNNEQSYVYNKILEGIEKNTGK
FT                 TFFLDAPGGTGKTFVINILLARVRKDHGIALAVASSGIAATLLEGGKTAHS
FT                 VFKLPLNLTRVETPMCNISKQSNIAQVLKDCKLIVWDECTMAHKGGFEALN
FT                 RTLKDIRGYNSLMGGVTVLLAGDFRQTLPVIPRGTRADEVKSCLKASYLWP
FT                 HIQKVALNKNMRVHVKGDTSAGIFAEMLLKIGDGNFPSLEGEITIPSNLCT
FT                 VVSSLSELTSRIYPDIINIKMKPIEWLCERAILTPKNDKAAEINEILLKAF
FT                 NEKAVEYKSFDSVIQSDDAVHYPLEFLNTLNPSGLPSHKLILKIGAPIMLL
FT                 RNLNPPKLCNGTRLQVKALHKNVIEAIVITGCARGDIVLIPRITLIPTDYP
FT                 FEFKRIQFPIKVCFAMTINKSQGQSLSMAGIDLREECFSHGQFYVACSRVS
FT                 SASSLVILALKGSTKNTVYKEVLR*"
XX
SQ   Sequence 2907 BP; 982 A; 483 C; 557 G; 885 T; 0 other;
     tcctacgatc gtcatgatat tatagctagg atatttcatt taaaagttaa gacgttaatg        60
     aaattgttaa caaaagggaa tttgtttggg gaagtgcaat gttttatgta ttcggtcgaa       120
     tgacaaaaac gtggtttacc acacatacat attttgttat ggctaaaaca gcgcatttct       180
     ccagataaat tagattttat cattagtgcg gaaatacctg atcctgaaaa agatcctctc       240
     ctttacggta ttatcaaagc caatatgatc catgggcctt gcggtaattc aaacaataga       300
     tcaccctgta tggagtcagg tagctgtagc aagaagtatc ctagaccttt cattcaagaa       360
     acacagacag gagacgacgg gtatccaaag tataggcgaa gagctccaga aaatggtggt       420
     tttactgttg aaataaatgg taagacactt gataatcgtt gggtagtacc gtataaccca       480
     gtgcttttac gtacatttgg tgctcatatt aatgtagagt actgtaactc tgtaaaatct       540
     ataaaataca tttgtaaata tattacaaaa ggaagtgatc aagcagcatt tggttttgaa       600
     aatgataatg atgaagtcaa gctttatgaa agtgatcgat atatcagcag ctctgaggct       660
     gtatggagaa ttctggcttt tcctatccac gagagatttc caacagtctt ccatctttcc       720
     gtgcatttag aaaatagcca gcgtgtttat ttcaacccta atgactccag tcgtttaaca       780
     gacatgatta acaatccacc aaaaactact cttttagcat ttttcgactt atgtaaaaca       840
     gatgattttg caaaaacact tctttatgtt gatgttccat cttactatgt atggaaaaat       900
     aatagatttg agagaagaaa acgcggaatt aacgtaattg gttggccggg aataaaacga       960
     gatcaagctc tgggtagagt atataccatt caccctaata ataccgattg ttactatctt      1020
     cgccttttac ttcatgaaat ccgaggtcct acatcttttt tgaaattgaa aactgttaac      1080
     ggcacaattc aacctactta tcagacagcg tgtaaggctc taggcttact ggaatacgaa      1140
     aggcactggg atacaactat ggaagaagct gtgctttgtg gttccccatt taaattacgg      1200
     gaactttttg caattatgtt gatattttgt caattgtcag atgctataag tctttgggaa      1260
     aaatataagg acagtctttc agaagatata agacatcgag tggagttgga tatacaaccc      1320
     gagaatgtga attcaattat taatgaagta tacaataaat gcttagttac tattgaagat      1380
     acagttctat ctctgggagg tacatttttg caacattatg gtttacctca accatcaaga      1440
     tgtgaagcag tcttacaaaa taaagattac cttcgagaga tcaattatga ttcaaatatt      1500
     ttggcacagt atataaattt taatgaaaat ttactaaata atgaacagtc ctatgtttat      1560
     aacaaaatat tagagggtat tgaaaagaac actggcaaaa catttttctt agacgcacct      1620
     ggaggtactg gtaaaacatt tgtcataaat attttattgg ccagagtacg aaaagatcat      1680
     ggaatagctt tggctgtagc ttcttcaggc atcgctgcta cattgctaga aggaggtaaa      1740
     acagctcatt ctgtatttaa attaccatta aacctaacga gagtagagac acctatgtgt      1800
     aatatttcca aacagagtaa tatagcacaa gttctaaaag actgtaagtt aatagtttgg      1860
     gatgaatgca caatggccca caaaggtggc tttgaagccc tcaatagaac attaaaagat      1920
     ataagaggat ataatagttt gatgggtgga gtcactgtgc tgctagcagg agattttcgg      1980
     caaacattac ccgttatacc taggggtaca agggctgatg aagttaagtc atgtctaaaa      2040
     gcttcgtatt tgtggccaca tatccagaaa gttgcactta ataaaaatat gagggtacat      2100
     gtgaaaggtg acacatctgc tgggattttc gctgagatgt tacttaaaat aggagacgga      2160
     aatttccctt cattggaagg tgagatcact attccctcaa atttgtgtac agttgttagc      2220
     tctttatcag aactaacttc cagaatttac ccagatataa taaatatcaa gatgaaaccc      2280
     atcgaatggt tgtgcgagag agccatatta actccaaaga acgacaaggc agccgaaatc      2340
     aatgaaattc tactaaaggc atttaatgaa aaagctgttg aatataaatc ttttgattct      2400
     gtgatccaat cggatgatgc tgtccattac cccttagaat ttcttaatac tctgaatcct      2460
     tctggtcttc catcacataa acttatcctt aaaattggag cacctataat gttactaaga      2520
     aatcttaacc cacctaaatt gtgtaatgga actagattgc aagttaaagc tctgcacaaa      2580
     aatgtaatag aagctatagt tatcactggg tgtgctagag gagatatagt tttgatcccg      2640
     agaataacgt taataccaac tgattatccc tttgagttta aaagaataca attcccaatc      2700
     aaagtttgct ttgctatgac tattaataag tctcaaggac aatcgttaag catggcaggg      2760
     attgacttaa gagaagaatg tttttcacat ggacagttct atgtcgcatg ttctagagtt      2820
     agctctgcca gtagtttggt tattttagcc ctaaaaggca gtaccaaaaa tactgtttat      2880
     aaagaggtat tgagatgaac acaaaaa                                          2907
//
ID   Helitron-1_BM repbase;    DNA;    INV; 5072 BP.
XX
AC   .
XX
DT   01-MAY-2010 (Rel. 15.07, Created)
DT   01-MAY-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   DNA transposon - consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5072
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 935-935 (2010).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           69..1016
FT                 /product="Helitron-1_BM_1p"
FT                 /translation="MTTICRYCNALKFKRETAGLCCASGKVKLDPLLTPPQ
FT                 PLKPLFDGTDPDSSHFLQHILEYDNCFRMTSFGANIIREGGFMPTCKVKDT
FT                 XHITNHSHQHNELQHITTTYTPHTTPSHEVTPYSSTNDCLQLQXQGQIYXX
FT                 HGSMVPTRNEPHQFLQIYFISSMVDQLNVRCNIQGTQQLKRRIIEQLQAFF
FT                 HANNAXVNMFKTALERMPSDTHKFVIRADCTPTGEHVRRFNAPTVNDVAAI
FT                 IVGDPTKSRDIVVQRRSNIMHRVNETHRLYDALQYPIIYWQQCSWYKEYNS
FT                 FTSDTKNKLNFMDCLKVLLCELKV"
FT   CDS           2491..4851
FT                 /product="Helitron-1_BM_2p"
FT                 /translation="MELIPNYGTPDLFITFTCNPKWTEIERELEPGQKPQD
FT                 RHDIIARVFQQKLKVMMDVLTKYRVFGDTRCYMYSVEWQKRGLPHAHILIW
FT                 LLNKLHSNEVDDIVSAEIPDPVTDPHLHDIVTTQMVHGPCGALNPLSPCMA
FT                 DGKCTKRYPRPLVAETVTGNDGYPVYRRRSKEDNGRTIKVKVQNQEIEIGN
FT                 EFIVPYCPLLSXIFETHANVESCHSAKSIKYLCKYVTKGSDMAVFGIASEN
FT                 ANDEISNFQMGRYVTTNEALWRLLSFQIHERYPTVVHLAVHLENGQRVYFT
FT                 EANAAQRAERPPSTTLTSFFAMCEADPFAATLMYVEMPKYYTWNQSTKKFQ
FT                 RRKQGTPVPDWPQVFSTDALGRMYTVHPRNDECFYLRLLLVNVRGPKSFAH
FT                 LKTVNGHQCQTYREACQLLGLLENDSHWDLTLADSVVSSNAYQIRTLFAII
FT                 ITTCFPSQPIQLWNKFKDDICEDILHRLRIQTNNPDIQITDEIYNEGLILI
FT                 EDQCLTIANKLLIEVGMIAPNRSMHDAFDQELNRELQYNVDTLQEFVRNNV
FT                 PLLNQQQKQVYETLMQAVDNNTGGLFFLDAPGGTGKTFVVSLILATIRSRC
FT                 DIALALASSGIAATLLDGGRTAHSALKLPLNLNTIDTPTCNISRSSAMGKL
FT                 LMQCKLIVWDECTMAHKKSLEALNFTLKDFRRNNNIFGGSMILLAGDFRQT
FT                 LPVIPRGTPADELNACLKASPLWNNVKTLSLTTNMRVQLQNDQSAARFSKQ
FT                 LLAVGNGKVPVDATSGLITLTNDFLSPICRLSISSY"
XX
SQ   Sequence 5072 BP; 1664 A; 989 C; 986 G; 1426 T; 7 other;
     atcgcttggc attccaatat gatcccactg cgaactacag tgatgatgaa aatttagata        60
     ttggaccaat gacgactata tgccgatatt gcaatgcgtt aaagttcaaa agagaaacgg       120
     ctggattgtg ctgcgcaagt ggaaaagtca aactagatcc attacttaca ccaccacagc       180
     cactgaaacc attgttcgat ggaactgatc ccgattccag ccattttctt caacacatcc       240
     ttgaatacga taactgcttt cgcatgactt cctttggagc taatatcatt cgagaaggcg       300
     gcttcatgcc gacttgcaag gtaaaagata caanacacat aaccaatcac tcacaccaac       360
     acaatgaatt gcaacacata acaactacat atacaccaca cactacacca tcacacgaag       420
     ttacaccgta ttcttcaaca aatgattgtt tgcaattaca gatncaagga caaatatatn       480
     atttncatgg ttcaatggtg ccaacacgaa atgaaccgca tcaatttctg caaatatatt       540
     tcatttcgtc gatggtggat cagctgaatg tgcggtgcaa tatacaggga acncaacagt       600
     taaagagacg aattattgaa cagttgcaag cattttttca cgctaataat gctgnggtta       660
     atatgttcaa aacagcattg gaacgaatgc catcggatac gcacaaattt gtcataagag       720
     cggattgtac cccaacaggg gaacatgtgc gaagattcaa tgcacccacc gttaatgatg       780
     ttgctgctat tattgttggc gatccaacta aatcgcgaga cattgtcgtt cagcgaagaa       840
     gcaatatcat gcatcgtgta aacgagacac atcgtttgta cgatgcgtta caatatccaa       900
     tcatttattg gcagcagtgc tcttggtaca aagaatacaa cagttttact tcagatacaa       960
     aaaataaact gaatttcatg gattgcttaa aagtgctgtt atgtgagctt aaagtatgac      1020
     aattaacaaa aattattgaa actagtggtc ccgcagtagt cgaaattcga ctacaattaa      1080
     ttgaaattat aagtttgaac attattaagg ttctattgtc aaagaatatt acttctatag      1140
     tcacaaattt cgtctacacc tatagacaaa taaatataaa gacgaacaat actatcctat      1200
     tctcaatttg actacgactt aaagcaataa gaaaagtctg acaataaaca aagggttata      1260
     ttatgcaggt gtgcgtgggt gtgcgtcaaa tacttggtag tgtgtgtaat tttttcttga      1320
     tttaatttat tatctactat ataaaaataa gtcgggtttt ccttcctgac gctataactc      1380
     cagaacgcac gaaccgattt ccacggtttt gcattcgttg gaaaggtctc gggctccgtg      1440
     aggtttatag caaagaaaat tcaggaaaaa attcaacaga aaagcgtgaa aatctttttt      1500
     tttttcttta acgcgccagc ggcaacacgt ttatttgaca actgtctatt gtgtactact      1560
     aatcaattga attgtcctta aagcataaaa aatcacttaa tgacacaaac cacattcgtt      1620
     tagtaattag atttaaaata agaatttaat cgatcagaaa tttagcttta tgattatttt      1680
     tcctgggttc ttagctttga gtttattatc agtataatct attttatatg tttagtttga      1740
     tttatgttaa aaagaatata aagtaacaaa ttaaaatgtt gtaaaacgct acttttttca      1800
     aaacgtttct aaacgttttg taagttatca aaatgacatc catcaaagtg acgttttcta      1860
     aagtcggggc ggaataagca tatactttaa gtgtataatc tatggaataa gcccccagtt      1920
     aatttcactg tgaaattgtg aaaaaaagta aaaaaaaagt tattcgtttc ctaacatttc      1980
     aattggaaag catcaaatca atcacgtgta ttgtgcaaat ttttattcaa tttcaacagc      2040
     aggcatttgt ctttaaggtc gtaagttgaa ctgtgtaaat tatgtggatc gtgcatttga      2100
     ggttaaattc accactctgt ccatagtcca aaatgcctag aagacgacgg gcgaacatcg      2160
     gccgccgcac aagacatgca agccagcaac aagtgtattc acagaactta agcgaagaaa      2220
     gacaaaatat aataagagaa aatgcccgat tgagacaacg cgtgagcaca cgaagatcat      2280
     tggcatcata caatcgcttg gcattccaat atgatcccac tgcgaactac agtgatgatg      2340
     aaaatttaga tattggacca atgacgacta tatgccgata ttgcaatgcg ttaaagttca      2400
     aaagagaaac ggctggattg tgctgcgcaa gtggaaaagt caaactagat ccattactta      2460
     caccaccaca gccactgaaa ccattgttcg atggaactga tcccgaatta tggaactccg      2520
     gatttattta ttacgttcac atgcaatccg aagtggacgg aaattgaacg tgagttagaa      2580
     ccgggccaaa aaccgcaaga tcgccatgac ataatcgcca gagtatttca gcaaaaactc      2640
     aaggttatga tggatgtgct tactaagtat cgagtttttg gtgacacacg ttgttatatg      2700
     tactcggtgg aatggcagaa gcgtggacta ccgcatgctc atatcctaat ttggttgctg      2760
     aacaaattac attcaaatga agtggatgac atcgtatcag ctgaaattcc tgatccagtc      2820
     actgatcccc atctacacga cattgtgacg acacagatgg tgcatggacc gtgcggtgca      2880
     ttaaatccat tatcgccttg catggctgat ggaaagtgca caaaacgata tccgcgaccg      2940
     ttagttgctg aaacagtcac agggaacgat ggatatccag tttatcgtcg gcgttcaaaa      3000
     gaagataatg gtcgaactat caaagttaaa gttcaaaatc aagagattga gatcggaaat      3060
     gaattcattg taccatattg cccgctgcta tcangaattt tcgaaacaca tgcaaacgtt      3120
     gagagttgtc attcggccaa atcaatcaaa tatttgtgca agtacgtcac aaaaggcagc      3180
     gacatggctg tgtttggtat tgcgtcggaa aatgcgaatg acgaaatcag caacttccaa      3240
     atgggcagat acgtcactac taatgaagca ctgtggcgat tattgtcatt tcaaattcat      3300
     gaaagatatc ccacagttgt acatttagca gtgcatttgg aaaatggcca aagagtttac      3360
     ttcactgagg ctaatgcggc acaacgagct gagagaccac catcgacaac attgactagc      3420
     ttctttgcaa tgtgtgaagc agatccattc gcagcgacgc tgatgtacgt tgaaatgccc      3480
     aagtattaca cttggaatca atcaacaaag aaattccaac gtcgcaaaca aggaacccca      3540
     gttccagatt ggccacaggt gttttccact gatgcactag gtcgcatgta taccgttcat      3600
     cctagaaatg acgaatgttt ttatttgcga ctgctgttgg taaatgtacg tggaccaaaa      3660
     tcatttgcgc atttgaaaac tgtgaatggc caccaatgcc aaacatatcg agaagcatgt      3720
     caactattgg gtttgctgga gaacgattct cattgggatt taacacttgc ggattcagtt      3780
     gtttcatcaa atgcgtacca aatacgaacg ctgttcgcaa ttatcatcac cacatgtttt      3840
     ccttcacaac caattcagtt atggaacaaa ttcaaagacg acatatgtga agatatcttg      3900
     catcgcttgc gcattcaaac gaataatcct gacatccaaa taaccgatga aatctacaat      3960
     gaaggattga ttctgattga ggatcaatgc ttgactattg caaacaagct actgattgaa      4020
     gtaggaatga ttgcgccaaa tcgatcgatg cacgatgcat tcgaccaaga attaaatcga      4080
     gagctgcaat acaatgttga tacattgcag gaattcgttc gaaataatgt gccgttgctg      4140
     aatcaacagc aaaaacaagt atacgaaaca ttaatgcaag cggtggacaa taatactggt      4200
     ggtctattct tcctggacgc acctggagga acagggaaaa catttgtcgt ttcattgatt      4260
     ttggccacta ttcgatcaag atgtgacata gctttggcgt tagcatcatc tggaattgcg      4320
     gcgactcttc tagatggcgg tcgtactgca cattctgcgc ttaagttgcc actcaattta      4380
     aacacaattg atactccaac atgcaatatt tcccgatcca gtgcaatggg aaaattgttg      4440
     atgcaatgca agctcatcgt ttgggatgag tgcacaatgg cacataagaa atcacttgaa      4500
     gcacttaact tcacactgaa ggattttcgg cgaaataaca acatctttgg cggctcgatg      4560
     atattgttgg caggcgattt caggcagacg ttgccagtaa ttccccgtgg aacgcctgca      4620
     gatgaattga atgcttgcct gaaggcatca cctttatgga ataacgtaaa aacattatcg      4680
     ctaaccacta atatgagagt tcaacttcaa aatgatcaaa gtgctgcacg attttccaaa      4740
     caattgttag ctgttggcaa tggaaaagtt ccagttgacg cgacatctgg attaattact      4800
     cttaccaacg actttttgtc gccgatttgt agactctcaa ttagctctta ttgaaaatgt      4860
     tttcccaaac attagtgaga attatgagaa ttatgcttgg ttaagtcaac gagcaattct      4920
     tgccgcaaag aataatgatg tacacgcact gaatttcacc attcaatcaa aaattgctgg      4980
     cgatttggtg acatacaaat ccgttgattc cataacaaat cccgatgatg tagtaaatta      5040
     tccaacggag tttttgaact ctctggagtt gc                                    5072
//
ID   Helitron-1_BTa repbase;    DNA;    INV; 4028 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4028
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 256-256 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1076..2311
FT                 /product="Helitron-1_BTa_1p"
FT                 /translation="NTIKHNKSHVSIIARFDNRIYQLPGGKTAHRVFKLPL
FT                 QMTSENDIKPAKLTTALKQILTEVDFIIWDEASMILSTAFQIVNVTLQDLM
FT                 RNNDPFGGKAVCLGGDFRQLLPVVKKGSRNQIVKSALISSPLWKHFKIFHL
FT                 KKNMRANNEEFSEWLLQIGNGKKEIVEFPSEMICNENIVDSIFKEYNEETL
FT                 KTSILLASRNCEVDRLNEEVLSKMEGETIVSEGFSWATAVDGDLTDQDELT
FT                 LRYQPEYLASLNPSGMPSQNLKLKEGAVVMLLRNICIEDGLCNGTRLIVLK
FT                 INKYILHCSILTGEKKGKIVSLPKITLNTKEQTNLPFVLNRKQFPVRLAFA
FT                 MTISKSQGQSFDRVGIFIDKERPMFAHGQLYVALSRCRTKEGLKIKIINFD
FT                 DDKNKNTAMNIVYQEVLH"
XX
SQ   Sequence 4028 BP; 1457 A; 705 C; 708 G; 1158 T; 0 other;
     tcttactata gtaaaaaaaa ataaggcctt ttttgtgtgt acgtccgtgt catttcgcat        60
     tctcattggt ctttcattaa ccaatcagaa aacgtcattg aaaatccccg ggaaatttaa       120
     atgtattctt ccgtaaagga attattgata ggtagacagg tataaaaatg ggatgtattt       180
     cttctaataa ccaggataaa agggaggatt attacctata caggatagtc ctagaaaaac       240
     gggatgtacc tatattaata aaccgggata acaggaagga tatcgatcat tgtgtatcga       300
     tattcgatac atcgttttgt tctaaagcag tattgactgg gataaaacgg gattccttca       360
     taataaccgg gataaaaggg aggaatttta catcctatac gggatagtca tggatagaac       420
     gggatgtacc tatattaata aaccgggata acaggaagga tatcgatcat tgtgtatcga       480
     tattcgatac atcgtttttt ctaaagcagt aatgactggt ataaaacggg atttcttcat       540
     agtgaccggg ataaagtgga ggaattttac ctatacagga tagtcatgga tagaacggga       600
     tgtacctata ttaagaaacc gggaaaacag gaaggatatc gatctttgtg tatcgatctt       660
     cgatacatcg tttttttcta aagcagtaat gactgggata aaaccggatt tcttcagagt       720
     gaccgggata atatgcagta attttaccta tacagtatag tcatttataa tagtggatgt       780
     aactatgtta aggaaccggg ataaaacaca tcaaatgcat catgaaacat agcaaacaca       840
     tcaaacacat catgaaacac gtaaaacgca atatacacat catgatacac ctaaaacaca       900
     tcaaacacaa caaacacatc atgaaacaca atcaaacaca ttaaacacaa caaatacatc       960
     atgaaacaca atcaaacaca tcaaacacaa caaacacatc atgaaacaca atcaaacaca      1020
     tcaaacacaa caaacacatc atgaaacaca atcaaacaca tcaaacacac catgaaacac      1080
     aatcaaacac aacaaatcgc atgtatcgat aatcgcacgt ttcgataacc gcatttatca      1140
     acttcctggt ggaaaaacag ctcacagggt ttttaaattg ccacttcaga tgacatccga      1200
     aaacgacatt aaaccggcaa aacttacaac agcattaaaa caaatattaa cagaagttga      1260
     ttttataata tgggatgagg cttcaatgat attgtcaaca gcttttcaaa tagtgaacgt      1320
     aaccttgcaa gatttaatga gaaacaatga tccattcgga ggaaaagcag tttgcctagg      1380
     cggagatttc agacaattat tgccagtagt aaagaaagga agcagaaatc aaatagtcaa      1440
     atcagcttta ataagctctc ctttatggaa acatttcaaa atcttccact tgaaaaaaaa      1500
     tatgagagca aacaacgaag aattcagtga atggctgcta caaatcggaa atggaaagaa      1560
     agaaatagtt gaattcccat cagaaatgat atgtaatgaa aacattgttg atagcatttt      1620
     taaagaatat aacgaagaaa cattaaaaac atcaatactt cttgcatcca gaaattgtga      1680
     agttgacaga ttgaatgaag aagtactctc aaaaatggaa ggagaaacaa ttgtgagtga      1740
     aggattcagt tgggcaactg cagtggacgg agacctgaca gaccaagacg agttaactct      1800
     gagatatcaa ccagaatact tagcttcact gaacccttca ggaatgccaa gtcaaaattt      1860
     gaagttaaaa gaaggagctg tggttatgtt actacgcaac atttgtatcg aggatggatt      1920
     gtgcaatggg acaagattaa ttgtcttaaa aataaataaa tacattttgc attgctcaat      1980
     tttaaccgga gaaaaaaaag gaaaaatagt ttcactacca aaaattacac ttaacacaaa      2040
     agaacaaacg aacctacctt ttgttttgaa taggaaacaa ttccccgtta gattagcttt      2100
     tgctatgact attagtaaaa gccaagggca atcgtttgac agagtgggaa tttttataga      2160
     taaagaaaga ccaatgttcg ctcacgggca actgtatgta gcattgtcta gatgtaggac      2220
     taaagagggt ttaaaaataa aaatcattaa ttttgatgac gacaaaaata aaaacacagc      2280
     aatgaacatt gtttatcaag aagttctgca ttaactttgt atattttcta ctgtttaaat      2340
     tgaggaatgc aaaatgtact tattatctta aaaacaatta attttgtccc tatgaacaaa      2400
     ccttttttta ttatgtatat aacttaaaat tataatttca ctaaacgtga tggacgcacg      2460
     gagaacgccc agagttaacg ccaggggatg aaaccccttg gagacttgat ggtacaattt      2520
     tttatctacc aatattattc acggtaaaat taaatcaccc aacccaagta gcatttttca      2580
     acggaaaaat tgcgatttta tcgccgataa aataaaaata ataaaaataa tattggtaga      2640
     taaaaaattg taccatcacg tccccaaggg gtttcatccc ctggcgttaa ctctgggcgt      2700
     tctccgtgcg tccatcacgt ttaccggtcg attttaccgg tgataaaatc gctaggatca      2760
     tcaacatatg agcgattatc gcctcagtcg ccacggtggt aggccaacac ttttccatta      2820
     ggctatggcc gcaacatgat tcccaagtgc gaattgcctc tatgtagatg gatcggcgct      2880
     tcgcaacctt acaacttttt acattgcgtt gactgacacc gagttttcat tgggtttttt      2940
     tttttttttt tattttccct cctctgtact ttatgaaata cgtactgtac tttatgaaat      3000
     acggttggta aaatgaggtt ctactggtaa tctcatcatt ctgtctttgt aaaattacca      3060
     agaatagtga gatggcaaag atatcgatgg accttggtaa aaacgccgat attttttatc      3120
     gcctgtggta gaattacaga gataaaatgg taaattaagt taccgggaat tgattacgaa      3180
     taaaagtggt attcttacct ggaaaaatca gtaaaaatac cggtctgcct ttctaacatt      3240
     accaatgatt gataaaaaaa agagatggta aagttaccaa cggaccttgg taaaaacggc      3300
     agcggcggcg gcatagaaac atgtttcata agcgtcattc atgcgttagt aggcgttgat      3360
     gaaaaattgc aatttattgc aattttatct ctataaaatc gcgttcgata aaatcgcgat      3420
     tttattgcaa tttatcgcga tttttctccc gataatattg cgatgattcg ccgtcgataa      3480
     aatcgcgatt tttttatccg ataatattgc aataaatcgc gacgtcgata aaatcgcgat      3540
     atattctccg attaaatcgc aatttatggc gatcactact actcgggaat tgcagcagca      3600
     aatccaaaaa ttgttacgca tcaccgccac tctttaattt aaatatcaaa ccgacctgtg      3660
     gccttttatc aaggttaata taaatacatc ccgttttatt aatgacaaac ctattatatt      3720
     tcgtttatat tatattatat tctatcctat ttgctttcca tccattttat tttatcccat      3780
     ataaaccgtt tcaaactgat tattcacctt tttttaaaac tccaacctta attgaagtaa      3840
     gtttttagct aaattgaaga tgatcttttg aatgaataag cacttaacag aacttcagca      3900
     gtattaatat taatacaatt tacgagaata atgtaaatta aaaaaaatta agtgatattt      3960
     tcataacgaa ttgacagaat atacgagggg gttgggccgc ggagcggcca gggggcggag      4020
     ccctctag                                                               4028
//
ID   Helitron-1_CFl repbase;    DNA;    INV; 2561 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.04, Created)
DT   09-JAN-2012 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2561
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 823-823 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           283..2526
FT                 /product="Helitron-1_CFl_1p"
FT                 /translation="MREFNVFAQSYQMMGEELEXQRRLEMESGELLPELQL
FT                 LFTSRPGMDRRRYNAQRTNEVAAVFSTTADGEIPESYVTIRNKNTKTLQKV
FT                 SIMDPNVEPWIYPLFYPYGTQGWHRDLKKLNSDRRITRGQYIKYRIAIRDE
FT                 FNVFLLGRRLFQQWLVDSYVKIEKDRIDYCKNHQKELRSETYQGLRDYXQT
FT                 TANNLNGRIGKMVILPSTFIGSPRNMLQNYQDAMAXVSKFGKPDLFITMTC
FT                 NPKWREIEENLLPGQQASDRPDICARVFNIKKDYLIDLIVKQKFFGEVAAF
FT                 VYVIEFQKRGLPHVHMLITLKYNFKITTPQIVDKYISAEIPDPCENRILHD
FT                 IVMRHMIHGPCSDWCLVDGRCSKHYPKPFLEETRMDENAYPYYRRRNNGRN
FT                 FERPGGYVVDNRYVVPYCPTLSIIFNSHINVEVVSSIKSVKYLYKYIYKGH
FT                 DVAAITIEPITESVVIDHDEIHNYIEARYVGSVEASWRILGKKLQDKSHAI
FT                 TRLPVHLPNEQNIIIENENIDDAMTSALDQVTMLIDYFSLNLRDEEAKQYL
FT                 YIEIPSYYTFKKEKVNGKNVSRWVKRKSHYNCIGRMYSVSPTQIELFHLRL
FT                 LLLTVKGATSFNDLRTVNGEFCQSFSAACLALGLIEDDDEWKRAMNEAVGW
FT                 MMPRQLRRLFVRILLHCQPLHPEELWENFKVAMSEDYIRYFGTLQRQNKAY
FT                 TQINSMLRAEGKSFVDFPQMKQLTENDEEENCMIFEEAMEIGTKRYQH"
XX
SQ   Sequence 2561 BP; 930 A; 345 C; 437 G; 846 T; 3 other;
     taataatttt tttcaacata ttcgtagtaa tataacagtt cgttttcatt tgcatcattt        60
     aacgctaatt taattaactt tcaagataga cgacctggtc catattgttt taaaatacaa       120
     ggacagattt attatcaaat taataaagca ttatatgctg cacaaaacga aagtcctact       180
     tatggtcaac tttttatcgt agattcaaat gaagcgatag atcatcgtct taatcaaaat       240
     tcatatttag atttcgaaat cgtacaaaac cttgaacaaa taatgcggga atttaatgta       300
     tttgctcagt cttatcaaat gatgggtgaa gaattagaaa ancaacgacg tttagaaatg       360
     gaatctggtg aattattacc ggaattacaa ttattattta cttcaagacc aggtatggat       420
     cgacgtcgat ataatgctca aagaaccaat gaagttgctg ccgtattttc tacaactgct       480
     gatggagaaa ttccagaatc atatgttaca atacgtaata aaaatactaa aactttacaa       540
     aaagttagta ttatggatcc aaatgtagaa ccatggatat atccattatt ttatccatat       600
     ggcactcaag gatggcatcg tgatttaaaa aaattaaata gtgatagacg aataactaga       660
     ggacaatata ttaaatatcg tatagctatt cgtgatgaat ttaatgtttt tttattagga       720
     cgtcgtttat ttcaacagtg gcttgtagac agttatgtaa aaattgaaaa agatagaatt       780
     gattattgta aaaatcatca aaaagaatta cgtagtgaaa catatcaagg tttaagagat       840
     tatntacaaa ctacggcgaa taacttaaat ggacgtattg ggaaaatggt tatacttcct       900
     tccacattta ttggatcgcc acgtaatatg ttacaaaatt atcaagatgc aatggcaatn       960
     gttagtaaat ttggtaaacc agatcttttc attactatga cttgtaatcc aaaatggcgt      1020
     gaaatcgaag aaaatctttt acccggtcaa caagcttcgg atagacctga tatttgtgct      1080
     cgtgttttta acattaaaaa agattattta attgatttga tcgttaagca aaaatttttt      1140
     ggtgaagtag cagcgtttgt atacgttatt gaatttcaaa aacgcggttt gccacatgtt      1200
     catatgttaa ttactttaaa atacaatttt aaaataacaa ctccgcaaat tgttgataaa      1260
     tatatttctg ctgaaattcc tgatccatgt gagaatcgta ttctacatga tatagttatg      1320
     agacatatga ttcatggacc ttgtagcgat tggtgtttgg tagatggacg ttgttcaaaa      1380
     cattatccga aaccttttct cgaagaaact agaatggatg aaaatgctta tccttattat      1440
     cgtcgacgaa ataatggaag aaattttgaa cgtcctggtg gatatgtagt tgataatcgt      1500
     tatgttgttc catattgtcc tactttatca attatattta atagtcatat aaatgttgaa      1560
     gtagtttcaa gtattaaatc agttaaatat ctatataaat atatttataa aggacacgat      1620
     gttgctgcta taactattga accaataaca gaaagtgttg ttattgatca tgatgagata      1680
     cataattaca tcgaagctcg ttatgttgga tctgttgaag ctagctggcg tattcttggt      1740
     aaaaaactac aagataaaag tcacgctata acacgtttac cagttcatct tcctaatgag      1800
     caaaatatta taattgaaaa tgaaaacatt gacgatgcaa tgacttctgc tttagatcaa      1860
     gttactatgt taatagatta tttttcatta aacttacgcg atgaagaagc aaaacagtat      1920
     ttgtatatag aaattccaag ttattataca tttaaaaaag agaaagttaa cggtaaaaat      1980
     gtatcacgtt gggtcaaacg taaaagtcat tataattgta taggacgaat gtattccgtt      2040
     agtccaacac aaatagaatt atttcattta cgattattgt tactcacagt aaaaggggcc      2100
     acaagtttta acgatttaag aactgtaaat ggagaatttt gtcaatcatt ttcagcagca      2160
     tgtttagctt taggtttgat cgaagatgat gatgaatgga aaagagctat gaatgaagct      2220
     gttggatgga tgatgccacg acaacttcgt agattatttg tacgtatatt attacattgt      2280
     caaccattac atcctgaaga gttgtgggaa aactttaaag tagcaatgtc tgaggattat      2340
     attcgatatt ttggtacgtt acagagacaa aataaagcct atacgcaaat taatagtatg      2400
     cttcgtgctg aaggtaaaag ttttgtagat tttccacaaa tgaaacaatt aacagaaaat      2460
     gacgaagaag agaattgcat gatatttgaa gaagctatgg aaataggcac caagcgatat      2520
     caacattaga caataataat aatcataata atcgttttta t                          2561
//
ID   Helitron-1_DAna repbase;    DNA;    INV; 1839 BP.
XX
AC   .
XX
DT   27-APR-2008 (Rel. 13.05, Created)
DT   28-APR-2008 (Rel. 13.05, Last updated, Version 1)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; Helitron-1_DAna.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1839
RA   Takahara S. and Sato H.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 8(5), 537-537 (2008).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron
CC   transposons in the Drosophila ananassae genome.
XX
SQ   Sequence 1839 BP; 617 A; 320 C; 357 G; 545 T; 0 other;
     tctatatata taaaagaaca acgtgtttta tgttacacat cttataaatc aagaacggaa        60
     gaacagattt gagtgaaaat tggtagggag gtagcttaga gccaggagaa ggacatagga       120
     tactttttgt cccgttcgac agcgttcctc cctttcctcc ctggcccata cttttttatt       180
     taggcagaca gctaagaaga aaatgtcaaa tcagttacaa acgaagtcaa attcatagtc       240
     aggctctcaa atttaacaac gaaccaaaaa gattgtgttg cgctgaaatc aatattaaaa       300
     ctatttctat taaataaata attaacaagt ggattgaagt gaagtgaagt ttaattaata       360
     atgccgcgac caagacggtc gaatctttcc cgacgaagcc gtaatgcaag aacaatacaa       420
     aatattgcat atgaaaggac tgaagaagaa cgagaaattg cacgtgaaca gcgccgcaat       480
     agtatggctc gacttcgtgc ttctcaaata gatttcaatt tgcgacgcag atatttagct       540
     gatttgaatc gagctgcgtt tcgatacgat tgcagcaatg attacagctt gcatcctagc       600
     gtttgcattg ggcaaatgga cgttgtttgc gagtattgtg gtgcattaaa gttttccgga       660
     gaaacgcctg gattatgctg cgttaatggt aaagtgaaat tgccagtgtt gactccgcca       720
     caagagccat tgtattcatt gctttgcggc gaaacacaag aatcacgcca ctttcttgca       780
     aatactcgaa aatacaatag ttgtttccaa atgacgtcat ttggggcaga cattatcgaa       840
     gaaggaggtt ttaatccgac atttaaggta tttatttttg tacttacata gaatgtagtt       900
     aaagaatctg gtttttattt tgtagataga atcgagcggt ttaatatcat ttccaaataa       960
     tttctgtaat tttgtctcat caaaagacga acttatcaac aatgtatttc caaatattat      1020
     ttctaactac aaaaataatg aatggttgag tgagcgagca attttagcgg ctaagaataa      1080
     agatgtagat gacctgaact acataattca aaataagatc attggaacaa tgcattcatt      1140
     caaatctatt gactgcgtca caaatgaaga tgaagccacc aactatccaa ttgaattttt      1200
     aaactctttg gacgtgcctg gcttaccacc gcacaattta cgcctaaagg ttggctccgt      1260
     agtaatcatg cttcgaaaca taaaccaacg aaaactgtgc aacggtacgc gtttggtggt      1320
     tagtaaattg atgaacaatg taatttacgc tacgataatg ataggaaaat tcaaaggtga      1380
     ggaagttctc attccgagga tcccgatgat cccaaccgat atgccgtttg aatttaaaag      1440
     acttcaattt ccgatacgtc ttgcatttgc catgacaatc aacaaatcac aaggccaatc      1500
     cttaaaagtt tgtggtttaa atctagaaca ttcatgtttt tcccatggtc aattatacgt      1560
     ggcatgttct cgggtcggaa gaccatctgc gttgtttgtt tttgcgcctg ataataaaac      1620
     aaaaaatgtc gtgtatcaca aggtgcttaa gtgaagagca acctatgtac taaaatacag      1680
     aaataataat gaatgattaa ggaggagaaa caaagaatat tgtataccca caagtattac      1740
     agaatttaat taatttgaaa attattcttt tttgtttgac ttatttttta tgcgtgcaac      1800
     aacaatatgc cacagcgaaa cgtggcaggg tactgctag                             1839
//
ID   Helitron-1_DBp repbase;    DNA;    INV; 5055 BP.
XX
AC   .
XX
DT   13-JAN-2012 (Rel. 17.05, Created)
DT   13-JAN-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5055
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 582-582 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           289..3291
FT                 /product="Helitron-1_DBp_1p"
FT                 /translation="MPRVSRSSQEQRRQAALSRSRARYERNASQIRTRNSQ
FT                 HIANVRDNNPNLREESRAQDSAARAQRRRSERVRNLERIRDAQAHSTRRED
FT                 SEERRREQLRNTAEHATRRTIPELRILNAFGTWPQRAIVERTPRSDGESSV
FT                 RNAAEHATRGQDYSGFRIPERIRDAEARATRREDSEERRREQLRNTAEHST
FT                 RRTIPEFRIPERIRDADARAIRREDPEERRREQLRNTAEHSTRRTIPEFRI
FT                 PERVRDADARAIRREDPEERRREQVRNTAEHASRRTIRNFEFQGRIRDAAA
FT                 RAAHREDSEERAREQERNTEDHRQRRRDSEDRQRERERDADNRRATRRNPI
FT                 ARTQEQRINTSQRRETRQQRRIREEQIRQMAEDRLINFRMDPQNRLDASQR
FT                 QSQRNMDARAQLSEDELDQEREQQRNRIRATARDLYHRNIKEGPTEICICC
FT                 GGTWFRSQVSGLYILAISSKFPLLNVGNAFYLSRKFPSPSGKYNFCRTCRR
FT                 AISLGKLPSLCLSNGFDFPEIPECLNGLTCLEERLISPRIPFMRIISLGYE
FT                 RQCGIRGAVVNVPISVPDIVTALPRSFDSTHVIQVHLKRRLEYAHNFMTET
FT                 IRPARVLEAVRYLVNTELYRKHNISLNESWLAGLQGINEIPFIADERDREA
FT                 VEQLLQQQHLSQNAAELEENLNPGGHETLSENNDTAIQRIALAPGEGRRPT
FT                 SLTLDEDAEELSFPTISCGEIFKGXTTYAKKARSQIRFYDRRCAVVPKVLY
FT                 MYKFYEMQRIQNSISIALRKKSGAVTAGNLRDESFVDRLVQHDDGYHILKG
FT                 LRSAPAHWEAEKKVIAMIRQFGLPTFFITLSAAETKWNELLVILSLLLDNR
FT                 AISEEEAAALSSSEKARLIRSDPVTCSRYFDYRLRQLMKLFKTDIFGEFNL
FT                 SHFYWRIEFQHRGSPHSRGVYWLAGAPKLEDAENTEQVINFIDRFITTNGD
FT                 DPELQEVIQYQRHKHSASCLRELRGQEFCRFNMPYPPMPETLFCIQ"
FT   CDS           3201..4358
FT                 /product="Helitron-1_DBp_2p"
FT                 /translation="CFLPERVTRTGVLPIQYAVSSYARNAFLHPIEENEVN
FT                 VKEHKTLFKKIKEALRTISNEDAALYNNFDYFLTHLETNFEAYKLALRSSL
FT                 KKPQIFLRRQFSDRSLNAYNRDILGLHRANTDIQFILDAYACCSYIINYIN
FT                 KSNRGVSQLLREAMAEISHGNISIKRKLQHLGNKFINATEISAQEAAYNIL
FT                 GLHMSEASEGTIFINTCHPDKRVRLXRSNEELERLPNNSVDIFERNILGRY
FT                 VQRHEQLEGICLADFAAWYRFVKRNARSAANHREDYDEANDVEVDDEDEVA
FT                 EQSYPLMDGSGCVKKRRHPLILRWVRFSINSSPSDYFREHLMLFYPWRNEE
FT                 AELLSNDIEDTSEQTTKPLRQKKGTMMCXMIWIGKSSXRFARG"
XX
SQ   Sequence 5055 BP; 1486 A; 1110 C; 1187 G; 1263 T; 9 other;
     aaatttaaag agggcggaag tattttttta ccagtgcgaa attttaagcg cgagaaagta        60
     ttttccagtg aaaattaaag tgcgcaagta ttttttcgag tgataaaaaa attaaaagta       120
     cgttaataac gggctaaaaa ttgttttcaa ataatatttg gtaagtctat ttctaaaaag       180
     tcctttaact tttaaatttt aaaatctaat accctggacg aaattccacg tatgtgattt       240
     tatatgctat atttcataat ttttattttt tatacagcac tataaaaaat gccacgcgta       300
     tcacgntcgt cccaggagca acgccgccaa gctgctttaa gccgcagcag agcccgctac       360
     gaacgaaatg cgtcccaaat aagaactcgg aactctcaac atatcgccaa cgtccgagac       420
     aataacccaa acttacggga ggaaagtcgt gctcaggatt ccgctgcacg cgcgcagcgg       480
     agaagaagcg aaagggttcg gaaccttgaa cggattcggg acgcacaagc gcattcaact       540
     cgtcgggagg actccgagga gcgacgacga gagcagttgc gaaacactgc tgagcacgct       600
     actcggagga ctattccgga acttcgaatt ctgaacgcat tcgggacatg gccgcaacgc       660
     gcgatcgtcg agaggacccc gaggagcgac ggcgagagca gtgtgcgaaa cgctgctgag       720
     cacgctactc gcggacagga ctattccgga tttcgnatcc ctgaacggat tcgggacgcg       780
     gaagcgcgcg cgacccgtcg ggaggactcc gaggagcgac gacgagagca gttgcgaaac       840
     actgctgagc actctactcg gaggactatt ccggaatttc gaattcctga acggattcgg       900
     gacgcggacg cgcgcgcgat ccgtcgagag gaccccgagg agcgacgacg agagcagttg       960
     cgaaacactg ctgagcactc tactcggagg actattccgg agttccgaat tcctgaacgc      1020
     gttcgggacg cggatgcgcg cgcgatccgt cgagaggacc ccgaggagag gcgacgagag      1080
     caggtgcgaa atactgctga gcatgcctcc cggaggacaa tccggaattt cgaatttcag      1140
     gggcggattc gggacgccgc agcgcgagct gctcatcgcg aggactcaga ggaacgagcc      1200
     agggaacagg aaaggaatac tgaagatcac cgacagcgac gaagggattc tgaggacaga      1260
     cagcgagaac gggagaggga cgccgataac cggagagcaa ccaggagaaa tcccatcgca      1320
     agaacacagg agcaacggat aaacacatca caacgccggg aaacacgaca acagcggagg      1380
     attcgggaag aacaaattcg gcaaatggcg gaggatcgat taataaactt caggatggac      1440
     ccccaaaatc gactggatgc ctcccaaagg cagtcgcaac gcaatatgga cgcaagagct      1500
     caactttcgg aggacgaact ggatcaggaa cgagaacaac agcgaaatag gattcgagca      1560
     acggcgaggg atctttatca caggaacata aaggaaggac caacggaaat ttgtatttgc      1620
     tgtggaggaa catggttccg ttcgcaggta agtggattat acatcctggc tatctcctct      1680
     aaatttcccc tcctaaacgt tggcaacgct ttttatttgt cacgaaaatt tcccagtccg      1740
     tccggcaaat ataacttttg ccgcacttgt cgtcgtgcca tctctcttgg caaactcccg      1800
     tcactctgcc tttctaatgg gttcgacttc ccagaaattc ctgagtgctt gaatggactc      1860
     acctgcctcg aagaacgcct tatctcaccg agaattcctt ttatgaggat tatttccctc      1920
     ggctatgaaa ggcaatgcgg aatcagaggg gcagtagtga acgttccaat ttcagttcct      1980
     gatattgtga ctgcgcttcc gcgctctttc gactctactc atgtcatcca agtccattta      2040
     aaaaggagac tagagtacgc tcacaatttc atgactgaaa ctattcgacc cgctcgggtc      2100
     cttgaagctg tacggtactt agtgaatacc gagctctaca gaaagcacaa catttcactg      2160
     aacgaatcat ggctagcagg acttcaagga attaatgaaa ttccttttat tgcggatgaa      2220
     cgtgatcgcg aagcagtaga gcaacttctt cagcagcaac acctatccca aaatgctgca      2280
     gagctcgaag aaaatttaaa tcccggaggc catgaaacat tatcggaaaa taatgatact      2340
     gcaattcagc gcattgcatt ggcgccgggt gaaggccgtc gcccaacaag cttaacgctt      2400
     gacgaagacg cagaggaact ttcctttcca actatttctt gcggagaaat atttaaagga      2460
     aanacaacct atgcgaaaaa agccagatct caaatccgat tttacgaccg tcgctgcgct      2520
     gtagttccta aagttttata catgtataaa ttttacgaaa tgcagcgcat tcaaaattct      2580
     atttcaattg ctttacgcaa aaagtcaggt gcagttaccg ctggtaatct gcgggatgag      2640
     tcatttgttg acagacttgt tcaacatgat gatggctacc acatccttaa aggcttacgg      2700
     tctgcaccag ctcattggga ggctgaaaaa aaagttattg ctatgattcg acaatttggg      2760
     ttgccaacct ttttcattac tctttccgct gctgaaacta agtggaatga acttttagtt      2820
     atcctttccc ttctattgga caatagggct ataagcgagg aagaagcggc agctctttcc      2880
     agctccgaaa aggctcggtt aatccgatcc gatccagtga cgtgctcccg gtacttcgat      2940
     tataggttgc ggcaattaat gaaattgttc aaaaccgata tttttgggga attcaatctt      3000
     tcccattttt attggagaat cgaattccag cacagaggat ctccgcactc tcgtggcgtg      3060
     tactggcttg ctggtgctcc taagctcgaa gacgccgaaa ataccgagca agtaataaac      3120
     tttatcgata ggtttattac tacgaatgga gacgatcctg agcttcaaga agtaattcag      3180
     tatcaacgcc acaagcatag tgcttcctgc ctgagagagt tacgcggaca ggagttctgc      3240
     cgattcaata tgccgtatcc tcctatgccc gaaacgcttt tttgcatcca atagaagaaa      3300
     acgaagtaaa cgttaaagaa cataaaactt tgttcaaaaa aattaaggaa gctttaagga      3360
     ccatttctaa tgaagacgca gctttatata ataattttga ttattttctg acccaccttg      3420
     aaactaattt tgaagcctac aaattagcct tacgttccag cttgaaaaag ccacaaattt      3480
     ttcttcgcag acaattctcc gaccgatcgc tcaacgctta taatagagat attctaggct      3540
     tacacagagc taatacggat attcaattta tcctagacgc gtacgcttgt tgtagttata      3600
     tcattaacta cataaacaaa tcgaacagag gcgtatcgca gttgctccgt gaagccatgg      3660
     cagaaataag ccatgggaat atttctatta aaaggaaatt acagcacctc gggaataagt      3720
     ttattaacgc tacagaaata tcggcccaag aagcagctta caatattttg ggtctgcata      3780
     tgtcggaggc aagtgaaggt actattttta taaacacttg ccatccagac aaacgagtta      3840
     gattgnctcg ctcaaatgaa gaattagagc gactaccaaa caactcggtg gatattttcg      3900
     agcgtaatat tcttggccga tatgtgcaaa ggcatgagca gttggaagga atttgtttag      3960
     ccgatttcgc ggcttggtac agatttgtca agcgaaatgc acgatctgcc gctaatcata      4020
     gggaagacta tgatgaagca aatgatgtgg aggtagatga cgaagatgaa gttgctgagc      4080
     aaagctatcc actgatggat gggtctggtt gcgttaagaa acgcaggcat cccctgattc      4140
     taaggtgggt tcgctttagc attaactctt cgccttccga ttatttccga gagcatttaa      4200
     tgctcttcta tccttggcga aatgaagaag ccgaacttct ttccaacgac attgaagaca      4260
     cttccgagca aaccacgaag ccattaaggc aaaaaaaagg aactatgatg tgttngatga      4320
     tatggattgg aaagagttct ngaagatttg caagaggata ggggagatna tgctcctgtt      4380
     gcggaagaac ctgcctccca attctcggac gaagagttta gagctttggc agtaccaaat      4440
     atagagcgga acgtaaacat tcttcactat gacgacgcgg taaacaaccc tgaagaagac      4500
     ggcgaacttc attaattaga ctccccctgt tagtttccga cgatgacctt tgctgctaac      4560
     tcggtccctc aancacaagc aaagacaata ttatgcacat gtatgcataa tgttgtttgt      4620
     aaaaatattt tttacgaata tgttggtgga ggggccggtg tgggaaaaag cagactggtt      4680
     tctaccatct atcagtctgt gacttggcga gcaaataagc ttcccggtgc tacggattcg      4740
     gcgaaggtat gtgctctgga aaagctgctt ttggaattgg aggactgaca cttcattcag      4800
     tgttttctct tccaattaat caggcttcag gtcccttgag acctttaagc aatgacagtt      4860
     taaatacaat ccattgcagt tgattgatct ccaattgatt ataattgatg aaatttcnat      4920
     ggttggttct aagatgcttt catttttgga tcaaggcttc gtcaaatttt ccgaagccct      4980
     gacttaagtt ttggtggaat atctattata gtttttggag atctaaagca gctttcccca      5040
     gttggagaca gttgg                                                       5055
//
ID   Helitron-1_DEl repbase;    DNA;    INV; 1278 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1278
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from Drosophila elegans.";
RL   Repbase Reports 12(4), 430-430 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           42..1202
FT                 /product="Helitron-1_DEl_1p"
FT                 /note="helicase."
FT                 /translation="MPRGRRANIGRRTRHASQQQVRSQNLSEERQNIIREN
FT                 ARLGQRVRTRRSLASYNRLAFQYDPTANYSDDENLDIGPMTTICRYCNALK
FT                 FKRETAGLCCASGKVKLDPLLTPPQPLKPLFDGSDPDSSHFLQHILEYNNC
FT                 FRMTSFGANIIREGCFMPTCKVKDTTHITNHSHQHNELQHIWDKCTTAHKK
FT                 SLEALNFTXKDLRRNNNIFGGLMILLAGDFRQTLPVIPRGTPADELNACLK
FT                 ASPLWNNVKTLSLTTNMRVQLQNDQSAAQFSKQLLAVGNGKVPLDATSGLI
FT                 TLTRLSLKRLMPNLIEATIINEMYAGENICIPRIPMIPTDLPFDFXRLQFP
FT                 VCLAFAMTINKSLGVCEMNLENHCFSHGQLYLACSRVGKPSAFF"
XX
SQ   Sequence 1278 BP; 418 A; 273 C; 253 G; 331 T; 3 other;
     tgcatttgag gttaaattca ccactctgtc catagtccaa aatgcctaga ggacgacgtg        60
     cgaacatcgg ccgccgcaca agacatgcaa gccagcaaca agtgcgttca cagaacttaa       120
     gcgaagaaag acaaaatata ataagagaaa atgcccgatt gggacaacgc gtgaggacac       180
     gaagatcatt ggcatcatac aatcgcttgg cattccaata tgatcccact gcgaactaca       240
     gtgatgatga aaatttagat attggaccaa tgacgactat atgccgatat tgcaatgcgt       300
     taaagttcaa aagagaaacg gctggattgt gctgcgcaag tggaaaagtc aaactggatc       360
     cattacttac accgccacag ccactgaaac cattgttcga tggaagtgat cccgattcca       420
     gccattttct tcaacacatc cttgaataca ataactgctt tcgcatgact tcctttggag       480
     ctaatatcat tcgagaaggc tgcttcatgc cgacttgcaa ggtaaaagat acaacacaca       540
     taaccaatca ctcgcaccaa cacaatgaat tgcaacacat ttgggataag tgcacaacgg       600
     cacataagaa atcacttgaa gcacttaact ttacantraa ggaccttcgg cgaaataaca       660
     acatctttgg cggcttgatg atattattgg caggcgattt caggcagacg ttgccagtaa       720
     ttccccgtgg aacgcctgca gatgaattga atgcttgcct gaaggcatca cctttatgga       780
     ataacgtaaa aacattatcg ctaaccacta atatgagagt tcaacttcaa aatgatcaaa       840
     gtgctgcaca attttccaaa caattgttag ctgttggaaa tggaaaagtc ccacttgacg       900
     cgacatctgg attaattact cttactcgac tttcgctgaa aaggcttatg ccaaatttga       960
     ttgaggcaac cattattaac gaaatgtacg caggtgaaaa tatatgtatt cctcgaatac      1020
     caatgattcc gactgatctt ccgtttgact tcaamagatt gcaatttcca gtttgccttg      1080
     cgttcgcaat gacaattaac aagtcgcttg gtgtttgcga gatgaattta gaaaatcatt      1140
     gtttttcaca tgggcagtta taccttgcgt gttcacgagt tgggaaacca tccgcttttt      1200
     tttaacgtca gaccaaaaaa caaaatatgt ggtttaccaa agagcacttc aatgaaacgg      1260
     ataatttgaa ggaagtaa                                                    1278
//
ID   Helitron-1_DEu repbase;    DNA;    INV; 8136 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Helitron DNA transposon from Drosophila eugracilis: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-8136
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 810-810 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3931..7011,6981..8087)
FT                 /product="Helitron-1_DEu_1p"
FT                 /note="helicase."
FT                 /translation="ESKAWPRPDLLLLHGIAVPQANSKLSRIYLEEHCEFR
FT                 EEIYQNASKLAYTGEYFTFCKTCHSNIKAGRKPKGAISNGLDFPEIHNSLS
FT                 GLTPLEERLISPRLPFMIIKSIGHERQSAIKGAVVNVPIPVSNIVTSLPRA
FT                 FNEAEVVQLHLKRRMEYGHDFMAETIRPFKIAEAIRYLVSTELYRKHNVSV
FT                 NEQWISNFISDTVPFVASQADLALVQGQLEIQQEDENPEAFNSVENTEAED
FT                 LNPGGQETLLENIQTHDVGMTRITIAPGEGQKPLDVILDEDSEELAFPTIY
FT                 AGVKRPSSESYTTIVRSELRNVDRRGCRTDKLFFNYKKLELIKIRNNISTC
FT                 LRKRSASSAITAANVLNEDFMGNLICHDEGYRILRDIRTSPAHWEDEKKKV
FT                 MAMIRQFGLPTFFITLSAAETRWPELIVLLKRNVDRVNISEEEAMSLQFRE
FT                 KARLIRTDPVTCARYFDYRYREVLKLMKKPGGIFGSNFVTTYYWRVEFQQR
FT                 GSPHIHGMFWLKDAPKIDLNNEESISNVIAFIDQFVTVDATSTDLAPYIEY
FT                 QKHKHGHSCLKNVRGQSICRFGIPYPPMPRTEILKPLPEETQNISLHRENF
FT                 KRIRNFLLRNQTDDLISHFSIFENFLSHDQVSLSYEDYIYAIRSSLKKPHI
FT                 FLKRTFAEIQVNAYNKHILSMQRANMDIQLILDPFACCSYIINYINKSQRG
FT                 ISKIMREAANEIKGGNSSIRQKLQYLGHKFISGTEISAQEAVYCCLGMALS
FT                 ETSNKCVYINTFPPEQRVRMLKPTRDLQNMPPNSTDIFLKGLLDRYEQRPD
FT                 VHDGMCLADFAANYEFCKSRGSTRQRATSNDEEENEILGQEYFALRDGSGF
FT                 IRERNKKSIIRYSPXNVNTDRSNYFRALVMLYAPWRNEQVELMEINCEQYY
FT                 TLNEEAIKANFEKYNAIDSLEDALRRAMEADSHNEENVDEEAAIDEEFRAL
FT                 AFPEISSQINVLNLNNNVSDVEPDNNIRVIKLPPIISPENLATLVRSLNLR
FT                 QKTFLTHVLHNAKKILYFTSLCKKNSVFYEFVGGGAGVGKSRLISTLFQSL
FT                 SKEYNSRVGCDPTSVKILLCAPTGKAAFGIGGSTLHSMFSLPVNQAGSAFR
FT                 SLSPDSLNTLRSRFIDLKVLIIDEISMVGATMFSHLDSRLKQIFSNVEAPF
FT                 GGISVIVFGDLRQLRPVGDRWIFQAPSHDPYSAIFGSYLWSPFRFFELTEI
FT                 MRQRDDQPFAIALNNMASGQMSSEDISLLRSRISDESHVPNDAVHLFSNNQ
FT                 DTDRYNREKLNSIPTERFNSEAVDSLKSAQISLDQRDRCLEQAKFLKTSET
FT                 QGLCASLILKTTAKYMMTVNVDTSDGLVNGATGVLREIGFSTSNIPDILWI
FT                 QFLDESIGVRARSKCRHRQEASWTPIFKVIKSF"
XX
SQ   Sequence 8136 BP; 2558 A; 1538 C; 1632 G; 2389 T; 19 other;
     tttttatacc cgttactcgt agagtaaaag ggtatactag attcgttgaa aagtatgtaa        60
     cagatagaag gaagcgtttg cgaccctata aagtatatat attcttgatc aggatcaata       120
     gcgaagtcga ttgagccatg tccgtctgtc cgtccgtccg tccgtatgaa cgctgagatc       180
     tcaggaacta taacagatac aaagttgagc ttaagcatga agattcttga ggtcccggga       240
     cagcgcaagt ttatttcagc atcccgccac gcccactcta acgcccacaa atcacaaaaa       300
     actaaaatcg ctgaaatctc agaactatta gagctagaaa gttgaaattc agtatgtata       360
     atctttggat gccagcgcat cttgtagtgg tactattatc tggccacacc cactcttacg       420
     cccaccaagc acaaaagacg gttttcgcat tttgtagaaa agctgatatc tcggtaacta       480
     ttagtgatag aaaattggga ttaggcatgt agatttttat gatgccccca atgcgaatcg       540
     tttttttctc atctagccac gcccacttta gcgcccacaa aacacagaaa accaaaaatg       600
     cgaaaatctc gagaactaat aagagctaga agggtaggct taggaatacg tattttagaa       660
     atggcactgc agcttgttga cttaktgaga tttccatccg gccacgccta ctcgaacgsc       720
     caccccactg aatctmaatg acctgctcat gcaataccga aactgawggc acccgaagga       780
     cactcagatc agttgaagac gccgcgaaac tcgwatcact tcwatctgst cacatcgaag       840
     acactcgact cattccaaga cacccaactc atttcaagac actgccgact cacttatttc       900
     sctctatttg ckatagagtg tgtcgggtgt ctatagtgcm tcggaatcat gtgcatagaa       960
     ttkagtgggt gacaamgacc tatagcgtct caaaacacac aaaaccacaa tgcgaatctg      1020
     gactcagggc gtgtgatctt ggcttgcgcg agggcgacaa acactcgaaa tgtatgagtg      1080
     tgattcgkgt gccgaaaaaa gacacccttg acgttctcwg gtctgcgamc tgtggcatac      1140
     atacatatgt gcatatgcat gttcttttaa taaacgtgta aagccacata ttttgtcaat      1200
     gtatatatat ttacatatat aatcttttaa gctattacca ctttcaaaga aatacttaat      1260
     aataatttta aatagcttgt tatttatgtt tttatgtttt attttgttta tttattaata      1320
     tttggtggca ctagctaaaa cgtttccagc acttatatga aagttaaaaa ccgaatagcg      1380
     gtgatatcat tgacagattt atttattcca gcgttgtaga aggtttttcc ttcaacttgc      1440
     tatttgaaat ccattggctt agaaaaaacg ttgaccaaca ttggcgaacc cgcgcatcca      1500
     gtccacgatt tgtttaattc aaatgattgg atcttttcct ccttatatta ttttcccaat      1560
     tagactaatt taattcttta atatttaaag taaatcaaaa gaagtaatag aaataaaatg      1620
     aaatggaaat ttttctgatg catttttcca aagcgccgcg tgaaggctaa aaagagttaa      1680
     aatatgttat agacactgat gaaaaaaagc gatactcgca cttaaaawga acatagaaaa      1740
     ttaatgcgat taattttggc ggtaaaaact acattatagt tctcccgtag tatttcatwc      1800
     tgttattgct accgctttca atatgacaag agctggggca gagccacagc agaacaacga      1860
     aaaattatgt gcactgctct gctcggaggt tcgacgagtt gcgagctaag gtatagcgat      1920
     agcagaaaat gatattctct tctcgcgccg tgcggggagt gagagcaata acctgataat      1980
     agtggtttct gtattagttt tcaaagcaat tgtaaatatt attaatctga ccgttaactg      2040
     tcattttata tcactatatt atattatctt tgtaccaaaa caaaaacaaa acggcacatt      2100
     gtacggagca aaaatatatt ttggtgccca gctctcagag ggaatatcat cttgtgctat      2160
     tctatacctg gtcgtcctcg tcgcccgaag cggcagacgt acacatgttt gtgtttctct      2220
     gttcctccgt agtctgctcc ggctctgtct ccggttctct caaagtgaga gcggtagcaa      2280
     agaattcgct gctacgaagt agtaatcaac cctgcatata cgttaatgat ataaattcat      2340
     tcaatttttg ccttatgaaa tttaaagtta gtaagctgtt gctcaatact ggcgctaaag      2400
     ttagaaaakt aacgaatagt ctgccatgtt tgaaagagcg tgcatttctt cttattcaag      2460
     tttgagatta ttactatttt tgcctttgta atttcgaaaa actatttatt cttaaaatag      2520
     taatagaaaa gaactgaaat ggcgaaggag ctgagtcttg atcttaactg ctttctctaa      2580
     tacttttttc gaaataaatt aagaatttgt gcgtggttgc tgcctctgct gacttcattg      2640
     ctgcttctgg ttgctgctct cgattctaag taccatttta aagtagattt attagattat      2700
     tagattaagt ctttttaaag actttccctt aacttatttg ctttaatatt ttaaattatt      2760
     aaacttgact tgcccctttt aaattaaaag tccccacatt aaaatttttg accttgaccg      2820
     aaaatttaag taaatttgaa tcccattttt acccggttgc gagtggttta ttcacgtcac      2880
     tggcaccgct ttttgcttat aatatttcat aaattaaact tttcaattta aaagtaaaac      2940
     cttcttaata ttgtcccacg tttacccttt atataaatat atttcctttt atatatatta      3000
     ttttattatt tttattatta ttacagtttt attattatta ttattatttc atatattcca      3060
     ctaatactaa tttacaatat actacttaca atttctttat tttgaataaa taaacccgtt      3120
     ttccttaaaa aatattattt caataacatt tgtatttcga caatatttgt ttaaaaaaaa      3180
     tgcctcgttt gcgtagaccc actgcgtctc aacgggctag gcaacagata ttaagaaata      3240
     gggtaaatag gggaaatgag cagtatgcag agatggagag gatagaaaat acacattctc      3300
     agcgcaggcg gagacaaaat atcgagtata ggacaatgga gcaggctcaa aatactgcga      3360
     gccgtaggga aaggcgcttg gaccccgttg ttcgtacggg tgaacaagca gtcaatactc      3420
     gccgtcgttt cgaaacacga caaaatagcg agtcccgggc tttggagcag gcgcaaaata      3480
     ctgcagcccg tagggaaagg cgcttggacc ccgttgttcg tacgggtgaa caagcgccaa      3540
     tcctgtttat cgtgcgggtg agcaagaagc aaataccctg cgacgatcac aggtccggta      3600
     tactcaggaa cgcttgctag aaagagagcg ggatagggct aggagagcta cagttaggag      3660
     tgttagggat cgcagggtcg tcgagcaagc aagaaataca ctagctcgac gaagtgcacg      3720
     tatagctgcc cgacaagcaa ctatcgatgc cattagaaat ataagccaaa gagttagtca      3780
     gtatagaagc cttagtgaaa atagggaagc agaaaacctt cggaatttga tccgaagtca      3840
     ggaggtaaga ttaaattttt ctcaggacac tcataggacc agtgccagca gacctactga      3900
     attagcagct cacatagcta cattcaatag gaaagtaaag cttggcccag accagatttg      3960
     cttttgttgc atgggattgc ggttccccaa gcaaatagta agctatctag aatctacttg      4020
     gaagaacatt gcgagtttag ggaagagatt taccagaatg cgagtaagct tgcttacact      4080
     ggtgaatatt tcacattttg taagacatgt cacagtaata taaaagcagg aagaaagccc      4140
     aaaggtgcca tttctaacgg cttagatttc cccgaaattc ataattcttt gagcggactt      4200
     actcccttag aggaacgact aatttcacct cgccttccat ttatgattat taagtcgata      4260
     ggtcatgagc gtcagagcgc tatcaaagga gctgttgtca atgtacccat tcctgtaagc      4320
     aatatcgtga cgtcccttcc acgagctttc aatgaggctg aggttgttca gctccacctc      4380
     aagcgaagaa tggaatatgg tcatgatttc atggctgaaa ctattaggcc ttttaagatc      4440
     gcagaagcta ttaggtattt agttagtaca gagctttaca gaaagcacaa tgtgtcagtt      4500
     aacgagcagt ggatctctaa ttttatatcc gacactgttc cattcgtagc atctcaagcg      4560
     gacttagcgt tagtacaggg acaattggaa atccagcagg aggatgaaaa tccggaggct      4620
     ttcaattccg ttgagaatac agaagccgaa gatttaaatc ctggaggaca agaaactttg      4680
     cttgagaata ttcagacaca cgatgtagga atgacgagaa tcacaatagc tccaggtgag      4740
     ggccaaaagc ctctcgacgt gattctcgat gaagattctg aagagttggc attcccaact      4800
     atatatgctg gcgtaaaaag accatcttca gaaagttata caaccatagt tagatcagag      4860
     cttaggaatg tagatagaag aggttgtaga actgacaaat tattcttcaa ttataaaaag      4920
     ttggaattaa taaagattcg aaataacatt tcaacttgtt tacgtaagcg tagtgcttct      4980
     agcgcaatca cagctgctaa cgtacttaat gaagacttta tgggaaattt aatttgtcat      5040
     gatgaagggt atagaattct tagggatatt cgcacgtctc ctgcccactg ggaagatgaa      5100
     aagaaaaaag tcatggctat gattcgccag tttggcctgc caactttttt cataacacta      5160
     tcggccgctg aaaccaggtg gcctgagcta atagtactgc tcaagcgcaa tgtagatagg      5220
     gttaatataa gcgaggaaga agctatgagc ttgcagttta gggaaaaagc gcgcttgatc      5280
     agaacagacc cagtgacgtg tgctagatat tttgattata ggtatagaga agttctgaag      5340
     ctgatgaaga aacctggggg tatcttcggc agtaatttcg ttactaccta ttattggcga      5400
     gttgagtttc aacagagagg ttcacctcat attcacggca tgttttggct gaaagacgcc      5460
     cctaaaatag atttgaacaa tgaagagtct atatctaacg taatagcctt catagatcag      5520
     tttgtgactg tggatgccac aagcacggat ttggctccgt atattgagta ccaaaagcac      5580
     aagcatgggc attcgtgtct aaaaaatgtg cgtggacaat ctatttgtcg attcggtatt      5640
     ccataccctc caatgccccg aacggaaata ctgaagccac ttccggaaga aactcaaaat      5700
     atttctcttc atcgcgaaaa ctttaaaaga attcgaaact ttttacttcg caatcaaact      5760
     gatgatttga ttagccattt tagcatattt gaaaattttc tttctcacga tcaagtgagc      5820
     ctcagttacg aggactacat atatgctatt aggtctagtt tgaaaaaacc acacattttt      5880
     ctgaagagaa catttgcaga aattcaagta aatgcttata ataagcacat tctttctatg      5940
     caaagggcaa atatggatat ccagttaatt ttggaccctt ttgcttgctg tagctatatt      6000
     attaattata ttaacaaatc ccaaaggggt atttcgaaga taatgcgcga agcagccaat      6060
     gaaattaaag gaggcaattc aagcattcgt caaaagctac agtatcttgg tcataagttt      6120
     atttcaggca ctgagatatc agctcaggaa gccgtatatt gttgtctggg aatggcgtta      6180
     tcggaaacta gcaataaatg cgtttacatt aacaccttcc ctccagaaca acgagttcgt      6240
     atgttaaaac ctacacgcga ccttcaaaat atgcctccga attcaaccga catatttttg      6300
     aaaggattgc ttgataggta cgaacaaaga ccagatgttc atgatggcat gtgtttggcc      6360
     gattttgctg caaattatga gttttgtaaa agccgtggaa gtactcgcca aagggcaaca      6420
     agtaacgatg aagaggaaaa tgaaatttta ggtcaggaat attttgcact gcgcgatggt      6480
     agtggattta ttagggaaag aaataagaag agtataatta gatatagtcc tkttaacgta      6540
     aacacagata ggtcaaatta tttcagagca ttagttatgc tctatgctcc ttggagaaat      6600
     gagcaggtag aactaatgga aataaattgc gagcagtatt atactcttaa tgaagaggct      6660
     attaaagcca attttgaaaa gtataatgcg atagacagtt tagaagacgc gcttagaagg      6720
     gccatggagg cagacagtca taacgaggaa aatgtagatg aggaggccgc aatcgatgag      6780
     gagtttaggg ccttagcgtt tccagaaata tcttctcaaa ttaatgtctt aaacttaaac      6840
     aacaatgttt cagatgtaga accggataac aatatccgag ttataaagct cccgccaatt      6900
     atttcacctg aaaacttagc aaccttagtt agatccctta atttaaggca aaaaactttc      6960
     ctaacacatg ttttgcataa tgcaaaaaaa attctgtatt ttacgagttt gtaggaggcg      7020
     gagcaggtgt cggcaagagt agacttatat cgactttgtt tcaatccctt tctaaggagt      7080
     ataatagtag agtaggatgc gacccaactt cggttaagat tttattgtgt gctcccacag      7140
     gcaaagctgc tttcggaatc ggaggctcca ctctccattc catgttctct ctccctgtaa      7200
     atcaggctgg gtccgcattt aggagcttaa gtccggattc gttaaatacc ctgcgttcaa      7260
     gatttattga tcttaaagta cttataatag acgaaatttc tatggtcggc gctacaatgt      7320
     tttcccattt ggattctcgc ctaaagcaaa ttttttctaa cgtagaagct ccctttgggg      7380
     gtatttcggt tatcgtgttc ggcgatctta gacaattgcg gccagtaggt gatcgttgga      7440
     ttttccaggc cccgtcgcat gatccataca gtgctatatt tggatcttat ctttggagtc      7500
     cttttaggtt ttttgaactc acagagataa tgcgacagcg agatgaccaa ccctttgcaa      7560
     tagctcttaa taacatggcg tccggccaaa tgtcgtctga agatattagt ttacttagat      7620
     cccgtatttc cgatgaaagt catgtcccaa atgacgcagt tcatcttttt tctaataatc      7680
     aggacacaga tcgatacaat agggagaagc tcaactcgat tcccacagaa cgctttaact      7740
     cggaagctgt agattcactt aaatccgcac aaattagctt agatcagaga gacaggtgtc      7800
     tggaacaagc aaagttttta aaaacatctg aaacacaagg tttgtgtgcc tctctaattt      7860
     taaaaaccac tgcaaaatat atgatgacgg tcaatgtaga cacatccgat ggccttgtaa      7920
     acggagccac tggtgttctt agggagatag gattcagtac gtccaacatt cccgatattc      7980
     tttggataca atttttagat gaaagtatag gtgttagagc acgatcaaag tgcagacata      8040
     gacaagaagc ttcttggacc ccaattttta aggttattaa aagtttttaa attaattcaa      8100
     atcagaaaaa ctaatttact aaaaaccaaa ataaaa                                8136
//
ID   Helitron-1_DF repbase;    DNA;    INV; 2350 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   28-JUL-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   Helitron-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DF.
XX
NM   Helitron-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2350
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 765-765 (2012).
XX
RN   [2]
RP   1-2350
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
CC   [2] updated to full length.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(303..1106,1120..2157)
FT                 /product="Helitron-1_DF_1p"
FT                 /translation="MPRKRKAGTLSRDTSRSRYMRNRRSERIAQLHQEEPE
FT                 DTRXERNEVREEPEVTRAERNEVRRLEQRQPRRVTVNRGRTNDHQRQQVHR
FT                 AFIYNSLLRLAFQYEPDIEYYAHSKVVIGTMDKECPHCHALKFKNEPAGMC
FT                 CASGKVQLPEIETPPEPLNGLLIGTDPDSNVFLKSIRTFNSCFQMTSFGAT
FT                 EIVRNTNANGQNYNSTFKIRGQVYHKMGSLLPMPNEQHKFLQIYFMGGEDS
FT                 GSALANRVNARCDYNNLDSFYARRIVIRILESVINVVLLEALNRTLKDIKN
FT                 NDKLFGGTLLVLSGDFRQTLPVIPRSTYADEINACLKSSPLWRNVXKLQLK
FT                 VNMRVQMLRDPSAETFSKQLLDIGDGKYGIDETGYVKLPTDFCTIADSQDT
FT                 LIEQIFPDLHSQYVNHEWLAERAILAAKNVDVDSLNQKIQMLLPGNLVSYK
FT                 SIDTVCDDSEAIHFXXEFLNSLDSQGMPTHNLKLKVGSPIILLRNLNPPRL
FT                 CNGTRLVIKKLMNNVIEASILNGKFRGENILIPRIPIILDAPIQFKRIEFP
FT                 IRLAFAMTINKSQGQTMSICGLDLRTPCFSHGQLYVACSRVGKPSSLFVLA
FT                 KDGLTKNIVHAIALRD"
XX
SQ   Sequence 2350 BP; 802 A; 445 C; 438 G; 660 T; 5 other;
     tctaatatat aaaattctcg tgtcacagtt tttgtgacct tactcctccg aaacggctat        60
     accgattctc atgaaaattt gtgagcgtat tgagtaagtc tgacaattac ccaacgtata       120
     tttttcatcc tcttaaatcg tgttcgacat accaaaaatc gcatataaag tgagtttcta       180
     cctcatcaca ctgacaaaaa cacgctacca tagcatttta aatcaattta aactggggaa       240
     aaaatccttc atcattaagt aaaatcatta attctattta tgagtgttct gtccagtgag       300
     ctatgccaag aaaacgcaaa gcgggtactt tgagccgtga tacaagtaga tctcgataca       360
     tgcgaaatag aagatccgaa agaatagcgc aattgcatca agaagagcca gaagatacac       420
     gakctgaacg caatgaagtc agagaagagc cagaagttac acgagctgaa cgcaatgaag       480
     tcagaagatt agaacaacga caaccacgcc gtgtcacagt caatagaggc agaacaaatg       540
     accatcaacg acaacaggta catcgagcat ttatatataa ttcattactg cgtctagcat       600
     tccagtatga gcccgatatt gagtattatg ctcactcaaa agtggtaatt ggtactatgg       660
     acaaggaatg tccgcattgt catgctctga aatttaaaaa tgagccagct gggatgtgtt       720
     gcgcgtcagg aaaagtgcaa ctaccagaaa ttgaaacacc acctgaacca ttgaacggct       780
     tacttatcgg cacggatcca gattctaacg tgttcctgaa gtcaattcga acatttaatt       840
     catgctttca aatgacatcg ttcggagcma cagaaatagt tcgaaatact aatgcaaatg       900
     gtcaaaatta caattctaca ttcaaaatta gaggccaagt ttatcataaa atgggctcac       960
     tgctgccaat gccaaatgaa caacataaat tcttacaaat ctactttatg ggcggagagg      1020
     attccggaag cgcacttgcc aatcgcgtga atgcacgttg tgattataat aacctggatt      1080
     cattttatgc cagacgcatc gtcatatgac gaatattagc ggatattgga gagcgtcata      1140
     aacgttgttt tgcttgaggc gttgaacagg acattgaaag atattaaaaa caacgacaaa      1200
     ctatttggcg gaactctgtt ggtcctttca ggtgatttca gacaaacact tccagtcatt      1260
     ccacgttcaa catacgctga tgagatcaac gcttgcctaa aatcatctcc attgtggcgt      1320
     aatgttkaaa aattacagct aaaagtaaat atgcgcgttc aaatgcttcg agatccatcc      1380
     gctgaaacat tttcaaaaca actcttagat atcggtgatg gaaaatatgg tatagatgaa      1440
     actggatacg taaaattacc gaccgatttt tgcacaatcg ctgattcgca agatactcta      1500
     attgaacaaa tatttcccga tttacactca cagtacgtaa atcatgagtg gcttgcagaa      1560
     agagcaattt tagcggcaaa aaatgtagac gttgacagtt taaatcaaaa gatacaaatg      1620
     ttgttgccag ggaacttggt atcatataaa tctattgata cagtttgcga cgacagcgaa      1680
     gcaatacatt ttcmaamaga gtttttgaac tcactggatt cgcaaggcat gccaacgcat      1740
     aatttaaaat taaaggttgg atctccaatt atcctacttc gaaatttgaa cccgccccga      1800
     ctgtgcaacg gtacgcgatt agtcattaaa aaattaatga acaacgtgat cgaagccagc      1860
     attttaaatg gaaagttcag aggtgaaaat atactaatac caaggattcc tattatactt      1920
     gatgcgccaa ttcaattcaa acgaattgag tttccgatta gattggcatt tgcaatgact      1980
     atcaacaaat cccaaggtca aacgatgtct atttgtggct tagatttaag aacaccatgt      2040
     ttttcacacg gacaattata cgtggcatgc tctcgagtgg gtaaaccatc cagtttgttt      2100
     gtattagcaa aagatggact cacaaaaaat attgttcacg ctatagcatt aagagactga      2160
     tattatttaa tagtgttata aattataata acttattaaa aataatgttt gctttttgtt      2220
     atttttatat tccctcatgg tttatagcgc tccagatgac tttataatac ataagtctag      2280
     aactgagtaa attttgtaga gaaattataa agtcatctgg tggcaaaaca acgtttgccg      2340
     ggtcagctag                                                             2350
//
ID   Helitron-1_DK repbase;    DNA;    INV; 5860 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.07, Created)
DT   19-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   Helitron-type DNA transposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DK;
KW   helentron.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5860
RA   Jurka J.;
RT   "DNA transposons from Drosophila kikkawai.";
RL   Repbase Reports 12(7), 1174-1174 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1594..5538
FT                 /product="Helitron-1_DK_1p"
FT                 /note="HUH nuclease, DEAD-like helicase, and
FT                 apurinic-like endonuclease."
FT                 /translation="MIRQFGLPTFFITFSAAESKWNELLVTLSRLLDNRNI
FT                 TEDEAASLSTAEKARLIRSDPVTCSRYFDFRFRQLIKLFKSSEIFGEFTLV
FT                 HYYWRIEFQHRGSPHSHGMYWFSGAPKLEGPENSDQVVSFIDRFITTTGDD
FT                 PELQEVIQYQRHKHSSSCLRELRGQEFCRFQMPYPPMPETMVLFPLEDNEP
FT                 NVEHFKEMFKKIKELLKSTSDEEAAVFNNFENFLTHLQISFEEYKFAIRSS
FT                 LKKPQVFLRRKFSDRLVNAYNRDILGLHRANMDIQFILDAFACCSYIINYI
FT                 NKSNRGVSQLLREAMTEISHGNISVKRKLQHLGSKFINATEISAQEAAYNI
FT                 LGLHMSEASEGNIFVNTCHPDKRVRIVRSNRELEQLPGNSTDIFEQNLLDR
FT                 YVQRHGDLESICLAEFAAWYKFSKVNAPSEPSNEDYDEAIDLELNEQNPIS
FT                 NQSYQLLDGTGSVKRRKHALILRWVRFSINSSPSDYFREHVMLFFPWRNEE
FT                 TELLSNDNEMTFRNNHEIIKRNKEQYDVFDDMELERVLQDLQNFEREDNGL
FT                 LPQEPASQYLDEEFRALAVPNVGQNVNILQDDNAVNNTEDGELQLIRLPPL
FT                 VSDDNLCSLSRSLNAKQRQYYAHVMHNIAAKKTFYEYVGGGAGVGKSRLIS
FT                 TIYQSITWRANKLPGATDSAKVLLCAPTGKAAFGIGGLTLHSVFSLPVNQT
FT                 SGPLRPLSNDSINTMHCKLIDLQLIIIDEISMVGSKTLGYLDQRLRQIFRS
FT                 QDVVFGGKSIIVFGDLKQLCPVGDRWIFLENISNPYNILAGTNLWSNFRYF
FT                 ELTEIMRQRDDHAFALALNNMSEANMTDADVVLFRQRVVTPNDVPDDAIHL
FT                 FASNDEVNQYNALKLAQIATEEFVSTAIDTVKSANMSVRNKETTLRNAQNM
FT                 KTSETQGLPYILHLKTTAKYMVTVNIDTNDGLVNGATGQLMQIDNCMVNNV
FT                 RLVTKLWIKFSDPTVGAMARSKVRRNDHPDWTPIEKTARVFQCGSSGHSSV
FT                 DRKQFPVVPAEAITIHKSQGATYSKVAVHLKRGIKRASLYVGCSRATSASG
FT                 LFLLGDFVPPTRFGATNVQAELESLRGEKALTTQYELLINGDNAISMYYHN
FT                 IESLRAHREDIANDNIICSANFLCFVETWTLPQEEYNLRDFDIIRRIDNNR
FT                 LNGIGKNGILIYAKQSISSNVQFLFETKKSPSPRATYQSIVFKYLDTSFII
FT                 VYRSPGFPIARFRNEIKSEVEKVRRMDNNKVVILGDFNICRSSASDVLEEF
FT                 LNGHNLLSLNNSATTKHQTQIDWIFSDSRVPEAVALTYKTPYSHHDGIFFK
FT                 YSL"
XX
SQ   Sequence 5860 BP; 1877 A; 1173 C; 1199 G; 1610 T; 1 other;
     cacgggatgc tgcagcgcat gcactcgcca ggcaggactc ggaggagcga cgacgacagc        60
     aggtkcaaaa caccctctct cgctctaacc ggagggcaca agaggaaaat aggagggccg       120
     agcgagcacg agacgccgag gtccacagaa tcgcgaggaa caacccaata actcgggcac       180
     gggaacaaca aaggaacaca atgcatcatc ggaacaccag acttcagagg agacttcggg       240
     agcagcaaat tcaggaaatg gctgaggagc ggctcctcac atacaggtct atttcccaaa       300
     atcgccaggc tgaatctgca aggcagtctc agcggaatat tgcttctaga gccgaacttt       360
     ccacggatga aagacaggat caacgggaac gccaacgcca aaggaaccga gccactgcga       420
     gggaacaata tcgacggaat atcaaggatg gaccaactga atgctgtgta tgctgtggag       480
     gaacatggtt tccatcgcag gtaagtggtt taacaaaatt tctatatctg ctaagtatcc       540
     cgctttagat gttgacaacg cattttattt aagtaggaaa tttccgagtc cgtccggcaa       600
     atatcagttt tgcagcacat gtcgtcagag tgtttcaaag ggtaaattac cttccctttg       660
     cctctctaaa ggctttgact tcccagatat ccccgagtgc cttaaaaatt taacatgcct       720
     tgaggagcgc cttatttctc cacgaattcc ttttatgcgc attatctccc taggatatga       780
     aaggcaatgc ggaattagag gtgcagtagt aaatgttccg atttcggtac ctgatactgt       840
     aaacgcgctt ccccgttcct ttgattcgac tcatgtcata caggttcacc ttaagaggaa       900
     gctagaatat tcccacaatt tcatgacaga aacaattcga cccgctcggg tccttgaagc       960
     tgttcgttat ttagttaaca ctgagcttta cagaaagcac aatattgctt ttaatgggag      1020
     ttggcttact caaatgggag atcgagaaga aatccctttt atcgcagatg aagccgaccg      1080
     agaggaggtg gaacagctat tacgccaact acccaattct caattaaatc gaccagaaga      1140
     agatttaaat ccaggcggtc atgaaaccct tttagaaaat aatgacactg ctcttcaacg      1200
     tatagctttg gcccccggag aagggcgcct gccaactaat ttaaccctcg atgaagatgc      1260
     agaagaactt tcgttcccaa caatctcttg cggtgctgtt ttcaaagcaa aaaccaccta      1320
     cgcaaaaaaa gcaagatcgc aaattcgttt ttacgatcgt cgttgtgcag tagtacctaa      1380
     ggtactttat atgtacaaat tttacgaaat gcagcgaatt caaaattcaa tctccattgc      1440
     ccttcgtaaa aaatcaggtt ccgtaactgc tgccaatgtg atggatagtt cgtttgttga      1500
     caaccttgta cagcatgacg acggatatca cattctaaaa ggtcttcgat ccgctccagc      1560
     tcactgggaa gctgagaaaa aaaagtcata gctatgataa ggcaatttgg gctgcctact      1620
     ttttttataa ctttttccgc agcggaatcc aaatggaatg aacttttggt gactctttct      1680
     cgtctattgg ataatagaaa tattacagaa gacgaagcgg catctctttc tacagccgaa      1740
     aaagctagat taataagatc tgacccagta acatgctccc gatactttga ctttaggttt      1800
     cgacaattaa ttaaattgtt caaaagctcc gaaatttttg gcgagtttac tctggtccat      1860
     tattattgga ggatagaatt ccagcacaga ggatcgcccc actctcatgg aatgtattgg      1920
     ttttctggcg ctccaaagct agaaggacca gaaaattccg atcaagtggt gagtttcatt      1980
     gatcgtttta ttacaaccac aggggacgat cctgaattgc aagaagtaat tcaatatcag      2040
     cggcataaac atagttcttc gtgtttaaga gaactgcgtg gccaggaatt ctgcaggttt      2100
     caaatgccat accctccaat gcctgaaaca atggttttgt ttccgttaga agacaacgaa      2160
     cccaatgttg aacattttaa agaaatgttt aaaaaaatta aagagctttt aaagtcaact      2220
     tccgatgaag aagcagccgt ctttaataat tttgaaaact ttcttaccca tctacagata      2280
     agttttgaag agtacaagtt cgccatccga tcaagcttga aaaagcctca ggtatttctt      2340
     cgccgcaaat tttccgatag gttggtaaat gcttataaca gggatatcct gggcctacat      2400
     agggcaaaca tggatataca gtttatctta gatgcatttg cctgttgtag ttatataatt      2460
     aactacataa acaaatcgaa ccgtggggtg tcgcaactgc ttcgagaagc catgactgaa      2520
     ataagccatg gaaatatttc agtaaaaaga aagttgcagc atctcgggag caaatttatt      2580
     aatgctacgg aaatatcagc ccaagaagca gcctacaaca ttttaggctt acacatgtct      2640
     gaggcaagtg aaggaaatat ttttgtaaac acttgccatc cagataaaag agttcggata      2700
     gtgcgatcta atagagaatt agagcagctt cctgggaact caactgacat tttcgagcaa      2760
     aacttgcttg atcggtacgt acagaggcat ggagacttag aatcgatatg ccttgcagaa      2820
     tttgcagctt ggtacaaatt ttccaaggta aacgcaccat cagaaccgtc caacgaagat      2880
     tatgatgaag cgatcgactt ggaactaaat gaacaaaatc ccatttctaa ccaaagctac      2940
     caactgctag atggaactgg gagtgtcaaa agacgcaagc atgccttaat tcttagatgg      3000
     gttcgcttta gcataaactc ttccccttct gattatttca gagagcacgt aatgcttttc      3060
     ttcccatgga gaaatgaaga gactgaactt ctttcgaatg acaatgaaat gacattcaga      3120
     aataatcatg aaatcattaa gcgcaacaaa gagcaatatg atgtgtttga tgatatggaa      3180
     ctagagagag ttcttcaaga tttgcaaaat tttgaaagag aagataatgg gcttctacct      3240
     caggaacctg cctctcaata tctagatgaa gaatttaggg ccttggcggt accaaacgtc      3300
     ggacaaaacg ttaatatact ccaagatgac aatgctgtaa ataacacaga agatggcgaa      3360
     cttcaactaa ttagacttcc cccgttagtt tctgatgata acctttgctc gctgtccagg      3420
     tcgcttaacg caaagcaacg tcagtattat gcccacgtaa tgcataatat agcagccaaa      3480
     aaaacatttt atgaatatgt tgggggaggt gctggagttg gcaaaagcag actgatttca      3540
     actatatatc agtctataac ttggcgagct aataagctac cgggagcaac ggattctgca      3600
     aaggtcttac tttgtgctcc tactggaaaa gcagcttttg gaattggagg acttacactt      3660
     cattccgttt tctcacttcc agtgaatcaa acatcaggtc ctttaagacc tttaagcaat      3720
     gactccataa acacaatgca ttgcaagcta atagacctcc aattaattat catcgatgaa      3780
     atctcgatgg tcggatctaa aacgctagga tatttagatc aaagacttcg acaaattttt      3840
     agaagccaag acgtagtttt tggcggtaag tctattatag tgtttggaga tctgaagcag      3900
     ctgtgcccag taggagatcg gtggatattc ctagagaata tctcaaatcc gtataacatt      3960
     ctggctggca caaacctgtg gagtaatttt aggtatttcg agctaacaga aataatgagg      4020
     caacgggacg atcatgcatt tgctttggct ttgaataaca tgtcagaagc taacatgaca      4080
     gatgcagatg tggtgctttt taggcaaaga gttgtcacgc caaacgacgt tccggatgac      4140
     gcaatccact tatttgcttc caatgacgag gttaatcagt acaacgcctt aaagctcgct      4200
     caaatcgcca cagaagagtt tgtttcaact gccatagata ctgtgaaatc agctaatatg      4260
     tcagtaagaa ataaagaaac aactctcaga aatgcccaaa atatgaaaac gtccgaaacc      4320
     cagggactgc catatattct gcatctaaaa acaacagcaa agtatatggt taccgtcaat      4380
     atagatacaa atgatggact ggtaaatggg gcaacaggcc aattaatgca gattgacaac      4440
     tgcatggtaa acaacgttag gttagtaaca aaactttgga ttaagttttc agatcctaca      4500
     gttggtgcca tggccaggtc aaaagttcgg agaaatgatc atccagattg gactccaatt      4560
     gaaaaaacag ctcgagtatt ccaatgcgga agctcaggac attcttcggt tgatcgaaaa      4620
     caattccctg ttgttcctgc tgaggctata actatacata aaagccaagg agcaacctac      4680
     agcaaagtcg cagtgcacct taaaaggggc attaagcgag cttcgcttta cgtaggttgc      4740
     agcagagcaa caagcgcatc gggtcttttc cttttaggag actttgttcc tccaactaga      4800
     tttggagcta caaatgtcca agcagagcta gaaagcttaa gaggtgaaaa ggccttgact      4860
     acgcagtatg aattattgat caatggggat aatgccatct ccatgtatta tcacaacatt      4920
     gagtctcttc gcgctcatcg cgaagacatt gccaatgaca acattatttg ttctgcaaac      4980
     tttttatgtt ttgttgaaac ctggactctt ccccaggaag agtacaactt aagggatttc      5040
     gacattatca gaagaattga taacaatcgg ttaaatggta ttgggaaaaa cggaatactc      5100
     atatatgcta aacaaagtat ttcgtcaaat gtgcaatttc tttttgagac aaagaaatcg      5160
     ccaagtccca gagcaaccta tcaatcgatt gtttttaaat atcttgacac gtcatttata      5220
     attgtgtata ggagtcccgg atttcctatt gcaagatttc gaaatgaaat taaatctgaa      5280
     gttgaaaaag tacgcagaat ggataataat aaagtggtaa tattaggaga ttttaatatc      5340
     tgcagatcct cagcgagcga tgttttggag gaatttttga atggacataa tcttttgtca      5400
     ttgaataatt ctgcaacgac aaaacaccaa acccaaattg attggatatt ttctgactct      5460
     cgagttccag aagctgttgc ccttacatat aaaacacctt atagccatca tgatggtatt      5520
     ttttttaaat atagcttgta agagtgtata cttaagttat ttaacaaatt atggctataa      5580
     gtagaattta ttgtaaatat agtattgtaa atatataaaa aaaattgaaa atattaacaa      5640
     attttccaat atatttcata tttagctata atttccccct cgtggattga gaccttgtcg      5700
     tggtgtgggg gcttagtacg tgaatttcga aaaaaataaa atttactgaa actaaccgca      5760
     atccttactt aaacttaaac tcttaaacta ttttttattt ttttacttac tgcaagggta      5820
     tttcaacttc ggctagccga agttagcttc ctttcttgtt                            5860
//
ID   Helitron-1_DPe repbase;    DNA;    INV; 7229 BP.
XX
AC   .
XX
DT   07-JAN-2012 (Rel. 17.08, Created)
DT   07-JAN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7229
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1376-1376 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..6678
FT                 /product="Helitron-1_DPe_1p"
FT                 /translation="MPRRLSASQQSQRRKLRNRSNRDRNLGNLENIEFIEN
FT                 RELVIDAHPXFVEPVRNQELETEGPNQETAWQVSGVGQEEQAAVPGXQVEN
FT                 AAGDSDGINAQNKRQVSVRQSVRLRNQHVENIEERVELRTRQGQVANTERR
FT                 FKRRRSQRYRATEQAQNTAEHVLRRTDSRIRREEQVADTVRRSRRRQDSXY
FT                 RAREQEQNTXEHIVRRTDAQIRHEEQVADTVRRSRRRQDPDYRTREQEQNT
FT                 VEHIVRRTDARIRHEEQVADTVRRSRRRQDPDYRAREQEQNTVEHIVRXTD
FT                 AQIRHEEQVADTVRRSRRRQDSDYRTREQERNTERRQRVRLNNERRRMLER
FT                 EQDRVRRVQERSLVDRRRISRARDTLARQAARAAARQLEIDAARTASQRVS
FT                 QYRSDSSNRVEQNLRNASRMQQERANISQEDRAQIEPRIRLSGLEALKVVY
FT                 NRNVKLGPDQVCLSCKGLWFPKQICKIPRVLLESDCEFSGEIFALESLLEF
FT                 PSDCPTLKFCRTCHSNIKKRIKPKLFFNELDFPTLPDCLKGLTPLEERLIS
FT                 PRLPFMIIKPILPGGRGQNAIKGAVVNVPISVSDIVKELPRAFHEAQVIQL
FT                 HLKRRKEYLHAFMAETIRPSKIFEALRYLVTTDLYKKHNVVVNEQWISGFT
FT                 SDIVPFVASQADAAFLESMQNRDRNVDTEPAHPDEEVEAEELNPGGQETLL
FT                 ENNIPFDDRIIKIAPGQGQRPLDMILDIDSEELSFPTIYAGVKRQSSQSFT
FT                 TIVRSELRNVDRRGCRTDKLFFNYKKLELIKIRNNISICLRKRSTSSAVTA
FT                 ANALNENFIGGLINHDEGYRVLRDIRSSPAHWEDEKKKVMAMIRQFGLPTF
FT                 FITLSAAETRWPELLVLLKKNVDREIISEEEAMNLPYTEKERLIRADPVTC
FT                 ARYFDYRYREILKVMRNREGIFGENFVIKYYWRVEFQQRGSPHIHGMFWLK
FT                 DAPAVDLTSTESISTVIAFINKHITVDVTDSELAPYVEYQKHRHKDMSCLK
FT                 KANKSGKKVCRFGIPYPPMPQTEILSPLPEETPNLDFHQGNFKKIQDLLNS
FT                 DQSSDMIDHLSIFENFLSHEQVSLNYEDYKYAISSGLKKPHIFLKRSFAEI
FT                 CVNAYNKHIISMQRANMDIQYILDPYACCSYIINYINKTQRGISKLMREAA
FT                 KEVQGGNYTXRQKLQHIGHKFISGTEISAQEAVYCCLGIPLSGTSNKCVQV
FT                 NTFPPEQRVRMLKSTSILQNMHQESTDIFVKGLLERYEQRPTDLEGLCLAD
FT                 FAANYEFSKSGKRTCQNRDDEEDEENEAQVEVFIPLRDNSGFIRERTKPSI
FT                 LKYMRFNINTDRSNYFRALAMLFYPWRDEEKDLVSVNCEDLYNNHQELVNS
FT                 NFQKFNALGDLEDALRRAMEAEENREEGEEVVDEAIAEEFRALAIPEISSQ
FT                 INVLNLNDQAADQDRSIRLIKLPPIVSLNILANLIRSLNLKQKTYLTHVLH
FT                 NVRNKAVFYEFVGGGAGVGKSRTISTIFQTISQEFNRRPGSNPETVKVLLC
FT                 APTGKAAFGIGGATLHSMFSLPLNQSNHAFKQLGPDLLNTLRSRFIDLKIL
FT                 IIDEISMVGEKMFSYLDMRLKQIFSRPESPFGGISVIVFGDLRQLCPVGDR
FT                 WIFKSSSGAHNPYSAIVGSSLWDGFKFFELTEIMRQRDDQPFATALNNMAS
FT                 AVMTSEDIQLLRDRIVHGSEAPRDAIHLFYSNSETDKYNKEKLSSIMTAEY
FT                 TSIALDSIKAEHLNPDIKTKYLDSVKSFKTSNTQGLCTSLVLKTTAKYMMT
FT                 VNVDTSDGLVNGATGVLMQIDLSSSNTPELLWIHFLEESVGVNARSKRSHS
FT                 NESSWTPVQKTTKSFQYHQNEQVTIDRKQFPIVAAEAITIHKSQGATYSKV
FT                 VVHTSSNMQREALYVACSRATSANGLYIVGPLIPSRPKRDCPVAKEMENLR
FT                 SAKLLHTHFDCLLNPSELNIFFHNTESLHCHFIDVCSDQLMLKSSILCFVE
FT                 ASTYSNEAYNIPGFSTAVRLDCQSVASGARPKRGILIFVRNELLNHCSIIE
FT                 SNRYYADSGNLASPVFEYALFKYKSVGFIVIYRTPTYPLRKFEAEFEVLFQ
FT                 RHPFLDRNSVVLGDFNLCLRSLSGCCKKIYEFLSERNCRSLLDLNSSTTNC
FT                 DTHIDWAFSNISDSRATARTFETIYSYHSGILVNVREAED"
XX
SQ   Sequence 7229 BP; 2257 A; 1377 C; 1568 G; 2014 T; 13 other;
     ttttatatat atatatataa ttatatttta tantatatat acatatatta ttatatatta        60
     tatcgtattt attatatagt tatattatta ttactattat atgtatatat tatattatta       120
     ctatatagtt tttcttattt ttattattta attatatttt acatacattt tgtcatgcct       180
     cgtaggctat ctgcttctca gcagtctcag agacgcaaat tgagaaacag atcaaataga       240
     gatagaaatt taggaaattt agaaaatatc gagtttattg aaaataggga acttgtaata       300
     gatgcacacc ctgngttcgt tgaaccagtt agaaaccaag agctagagac ggagggacca       360
     aatcaagaga ctgcttggca ggtttccggt gtaggtcagg aagagcaggc agccgtcccc       420
     ggcgancagg tagagaatgc agcaggcgat agcgatggca taaatgcaca gaataaacga       480
     caagtgtccg tgcgtcagtc cgtacgttta cggaaccaac atgtagagaa tatagaagaa       540
     agagtagaat tgagaacacg acaggggcaa gtggccaaca ctgagcgtcg gttcaaacgg       600
     agaaggagcc aaaggtatag ggctacagag caggcacaaa ataccgccga acatgtactg       660
     agacgaacag actctcgcat tagacgcgag gagcaagtgg ccgatactgt gcgtcggtcc       720
     agacgtagac aggactcgga ntatagggca cgagagcagg aacagaatac ngnagaacat       780
     atagttagac gaacagacgc acagattaga cacgaggagc aagtggccga tactgtgcgt       840
     cggtccagac ggagacagga cccggactat aggacaagag agcaggaaca gaataccgta       900
     gaacatatag ttagaagaac agacgcacgg attagacacg aggagcaagt ggccgatact       960
     gtgcgtcggt ccagacgnag acaggacccg gactataggg caagagagca ggaacagaat      1020
     acngtagaac atatagttag angaacagac gcacagatta gacacgagga gcaagtggcc      1080
     gatactgtgc gtcggtccag acgtagacag gactcggact ataggacaag agagcaagaa      1140
     cggaatacag agaggcgaca acgcgtacgt ttaaataacg aaaggagacg catgttagaa      1200
     agagagcagg atagagttcg cagggtccaa gaaaggagct tagtagatcg taggcgtatc      1260
     tcgcgagcgc gagacactct ggcacgccaa gctgctcgtg ccgcagcacg acagttagaa      1320
     attgacgctg ccagaacngc tagtcagaga gttagccaat ataggagcga tagcagcaat      1380
     agagttgagc aaaatttaag aaacgcctcc cgaatgcagc aggaacgagc aaatatctcc      1440
     caggaagata gggctcagat agaacccaga atcaggctta gtggcctaga agctctgaaa      1500
     gtagtttata acaggaatgt aaagctgggt cctgatcagg tttgcctttc ttgcaaaggc      1560
     ctgtggttcc ccaaacaaat ttgtaagatt cctcgcgtcc ttttagaaag tgattgcgag      1620
     tttagtggtg aaattttcgc tcttgaaagc cttttagaat tcccttctga ttgcccaaca      1680
     ttaaaattct gcagaacatg tcatagcaac attaagaagc gtataaagcc taagcttttc      1740
     ttcaatgaat tagatttccc cacgctgccc gactgcttaa aggggcttac tccattagag      1800
     gaacgactga tttctcctcg acttccattt atgataatta agcctatatt gcctgggggg      1860
     cgaggtcaaa atgccattaa aggggcagtg gtaaacgtcc ctatttcggt aagcgatatc      1920
     gtgaaggagc ttccacgagc tttccatgaa gcccaggtaa ttcagctcca cctcaaacgc      1980
     agaaaagagt atcttcatgc tttcatggct gaaaccatta gaccttccaa aatttttgaa      2040
     gcacttcgtt atttagttac cacagatttg tataaaaagc ataatgttgt agttaacgag      2100
     caatggatct ctggtttcac atccgatatt gttccattcg tagcatctca agcagacgca      2160
     gcctttttag aaagtatgca gaatagagat aggaatgtag atacggagcc ggcccatccc      2220
     gacgaggaag tagaagccga agagctcaac cctggaggtc aggaaactct gcttgaaaac      2280
     aacataccat ttgatgatag gattatcaaa atcgcaccag gtcaaggcca acgacctctc      2340
     gacatgattc tagacattga ctcggaagag ttatcctttc ccacnattta tgcaggcgtc      2400
     aaaagacaat cttcgcaaag ttttacaacc attgttagat cagagcttcg aaatgtagat      2460
     aggagaggtt gtagaactga caaactattc ttcaattata agaagttaga actcattaag      2520
     attcgaaata atatttcaat ctgcttacgt aagcggagca cttccagtgc agtaacggca      2580
     gctaacgctc ttaatgagaa tttcataggg gggcttatta accacgatga gggatatagg      2640
     gttcttcgcg atattcgatc gtctccggct cactgggagg atgaaaagaa gaaggttatg      2700
     gccatgattc gtcagttcgg cctgccgact tttttcatta ctctgtctgc tgctgaaacg      2760
     cggtggccag agttgcttgt tttgctcaaa aaaaacgtag atagggagat cattagcgaa      2820
     gaagaagcaa tgaatctacc ctacaccgaa aaggagcgtc ttatcagggc agatccagtt      2880
     acttgtgcta ggtatttcga ttataggtat cgcgagattt taaaagttat gaggaatcgg      2940
     gagggcattt tcggggaaaa cttcgtcatc aaatattatt ggcgtgttga attccaacaa      3000
     agaggttccc cccatattca cggcatgttt tggctgaaag atgccccagc agtggactta      3060
     accagtacag agtcaatttc aacagttata gccttcatta acaaacatat tacagtagat      3120
     gtcacagact ctgaattagc tccgtatgtt gaataccaaa agcatcggca taaggacatg      3180
     tcatgtctta aaaaagccaa taaaagtgga aaaaaagttt gtagattcgg tattccatac      3240
     cctccaatgc cccaaacgga gatattgagt ccactgccgg aggaaactcc aaaccttgat      3300
     tttcaccaag gaaattttaa gaaaattcaa gacctactga attctgatca atcctctgat      3360
     atgattgatc acttgagcat atttgagaac tttctttcgc acgaacaagt gagcctcaat      3420
     tacgaggact acaaatatgc aatttcttct ggtttaaaga aaccacacat ttttctaaaa      3480
     aggtcatttg ctgagatttg cgttaatgct tataataaac acatcatttc aatgcaaagg      3540
     gccaatatgg atatccaata cattttggac ccttatgcat gctgtagcta tataataaat      3600
     tatataaata aaacccaaag gggtatttca aagcttatgc gcgaggcggc aaaagaagtt      3660
     caagggggca attacacgat nagacaaaag ctacagcata ttggtcacaa atttatttct      3720
     ggcactgaga tatctgctca ggaagccgta tattgttgtc taggaattcc gttgtccgga      3780
     actagcaaca aatgtgttca agtaaatact ttccctccag agcaacgagt tcgaatgctc      3840
     aaatccacaa gcatcctaca aaatatgcat caggagtcca ctgacatatt cgtcaaagga      3900
     ttgctggagc ggtatgaaca aagaccaact gatcttgagg gcctgtgtct agccgatttt      3960
     gcagcaaatt atgaattttc taaaagcggg aaaagaacct gccaaaatag agatgatgaa      4020
     gaggacgaag aaaatgaggc acaagtagaa gtttttatcc ctctccgcga taatagtggt      4080
     tttattaggg aaagaactaa gccgtccatt ttaaaatata tgaggtttaa tataaataca      4140
     gataggtcaa actattttag agcattagct atgctgtttt atccgtggag agatgaagag      4200
     aaagatttag tgagcgtaaa ttgcgaggat ctttataata atcatcagga gttggtaaat      4260
     tcaaatttcc aaaaattcaa tgcattagga gatttggaag acgcgcttag gagggccatg      4320
     gaagccgaag agaataggga ggaaggtgaa gaggtagttg atgaggcaat tgctgaggag      4380
     tttagggctt tagcgattcc agaaataagt tcccagataa atgttttgaa cttgaatgac      4440
     caggcagcgg atcaagatag aagtattcga ttaattaagc ttcctcctat tgtttccctt      4500
     aatattttag ctaatttgat tagatcgctt aatttgaagc aaaaaaccta tctcacccat      4560
     gttctgcata atgtgagaaa taaggcagtt ttttatgagt ttgtaggtgg cggcgcaggc      4620
     gtcggcaaga gtagaaccat atctaccatt tttcagacca tttcccagga gtttaatcgt      4680
     agaccaggat ctaacccaga aactgttaaa gttctgctgt gtgctcccac aggaaaagct      4740
     gcatttggta ttggaggtgc cacacttcac tcaatgtttt ctttacctct caatcaatcc      4800
     aaccatgctt ttaaacaatt gggtccagat ttgttaaata ccttgcgttc aagatttatt      4860
     gatcttaaaa ttcttataat tgacgaaatt tctatggtcg gtgaaaaaat gttttcatat      4920
     ttggatatgc gtctaaaaca aatattttca aggcccgaga gtcctttcgg tggcatttct      4980
     gttatcgtgt ttggcgatct aaggcagtta tgtccagtag gtgatcgttg gatattcaaa      5040
     tcctcatcag gagcgcataa tccatacagt gcgatagttg gctctagtct ctgggatggc      5100
     ttcaagtttt tcgaacttac agagataatg cgacagcgag atgaccaacc ttttgcaacc      5160
     gcactaaata acatggcatc ggccgtaatg acgtcagaag atattcaatt gcttagggac      5220
     cgaatagttc acggcagtga agcaccaaga gatgcgatcc acttatttta tagcaatagc      5280
     gagacagata agtacaataa ggagaagcta tcatcgatta tgactgcaga atatacttca      5340
     atagctttag actccatcaa agccgagcat cttaacccag acatcaaaac aaaatatctg      5400
     gactctgtta agagtttcaa aacttcgaat acacaaggct tgtgcacttc attggttctc      5460
     aaaaccacgg ctaaatatat gatgacagtc aatgtagata catcagatgg tcttgttaac      5520
     ggagccactg gtgttttaat gcagatagat ctcagctcat ccaatactcc cgaacttctt      5580
     tggatacatt ttctcgagga aagcgtagga gttaacgcac ggtcaaagcg cagccatagt      5640
     aacgaatctt cttggacccc agttcagaaa actacaaaaa gttttcaata ccatcaaaac      5700
     gaacaagtta ctattgaccg aaaacagttt ccgattgtag ctgctgaagc tataactatt      5760
     cataagagtc agggagcaac atacagcaaa gtggtcgtcc acacttcatc caatatgcaa      5820
     agagaagcat tgtatgtagc ttgtagtagg gccaccagtg cgaacggact ttatatcgtt      5880
     ggaccactca ttccttcgag acccaagcgg gactgtcctg tcgcgaaaga gatggagaac      5940
     ttgcgttccg ctaagttact tcacacccac ttcgattgtt tactcaatcc gtccgaatta      6000
     aatattttct tccataatac ggaaagcttg cactgccatt ttatcgatgt ctgttctgat      6060
     cagctaatgc tcaaatcttc tattttgtgc ttcgttgagg cttccacata ctctaatgaa      6120
     gcttataata ttcctggctt ttccacagca gtgcggttag attgccagtc cgtagccagc      6180
     ggagctagac cgaaaagagg cattctaata ttcgttagga atgaactttt gaatcattgt      6240
     agtattattg aaagtaatcg atattatgcg gattccggga acttagcatc tccagtgttc      6300
     gagtatgctt tgtttaagta caaatctgtc ggttttattg ttatttacag aacccccacg      6360
     tatccgttgc gaaagttcga agcagaattt gaggtcttat ttcaacggca tccattttta      6420
     gatagaaatt ccgtagtgtt aggagatttt aatttatgcc ttcgttccct ttcaggttgc      6480
     tgtaagaaaa tttatgaatt cctttcagaa aggaattgta ggtcattgtt agatttgaac      6540
     tcgtccacaa ccaattgcga tacgcatatt gactgggcgt tttcaaacat ttccgatagc      6600
     agggccaccg cgcgcacctt tgagactatc tatagttatc atagtggaat tttagttaat      6660
     gttagagagg cagaagacta aacttttttg gtaatcaggc attagcgtaa atatttaata      6720
     ttttgtatta tttagccgta ttctgaatta tattaattct ttaatcttta cctttgttaa      6780
     acctttttta tttttatccg ttttattatt ttgttaatta agtttaggta tgaaataggt      6840
     ttattattaa tcatttctat gtatgtatat aggtattcnt gttagtctag atatttttta      6900
     taaaggattg gaatcctttt tttaaatttt tggggaatat ggagcttaaa aatgctttta      6960
     aaagcagctc aagtcgactc gtaggtcccc aagattatat tttggctaga gtgaccccat      7020
     tgcatcgtga tggcctcccc gtggtgttcc ctgggtacca atttaatgta ttaaattggg      7080
     agctaattcg agcggcgttt acgtataaaa tatattttat aacttacatt catgtatgta      7140
     gatcataagc tcacgtatat actgactgag taccgggtat aaagtagagc cgcggccttc      7200
     gccgcggctc acaacgttcc ccctcgttt                                        7229
//
ID   Helitron-1_DSuz repbase;    DNA;    INV; 8786 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   11-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_DSuz;
KW   helentron.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-8786
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 125-125 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1997..8431
FT                 /product="Helitron-1_DSuz_1p"
FT                 /note="HUH nuclease, DEAD-like helicase, and
FT                 apurinic-like endonuclease."
FT                 /translation="MPRISSLSQEQRRQAALRRSRAQYAQNASQIRTRNAQ
FT                 HIALARTSNLEVAEEARSRNSAARSQRRRSERIRASERLRNTDNRATWRAN
FT                 EENRGLERTRDAEAHASARSNSEERRRQQVQNTADHATWRSIGENRGLERT
FT                 RDAAARAMVRSDSEERRREQSRNTADHATWRSIGENRGPERARDAAARAMV
FT                 RSDSEERRREQSRNTADHATWRSIGENRGPERARDAVARAMVRSDSEERRR
FT                 EQSRNTADHATWRSIEENRGLERTRDAAAHASARSNSEERRRQQVQNTADH
FT                 ATWRSIEENRGPERARDAVAHAIVRSDSEERRREQSRNTADHATWRSIEEN
FT                 RGLERLRDAAAHRITRNNPITRTQEQRTNTVHHRNTRLQQRFREQQIQEMA
FT                 DERLLTYRSSSQNRQAESSRQSQRNIAARAQLSEDEREDQRERQRRRSRAT
FT                 AREQYLRNIKDGPTKFCTCCGGTWFPSQVSGLNIRTISSKYPNFSLDNAFY
FT                 LSRKFPSPSGKYQFCSTCRQGVSKGRIPSLCLSNGFDFPEIPECLKNLTCL
FT                 EERLISPRIPFMRIISLGYERQCGIRGAVVNVPISVPDTVSVLPRTFDSTH
FT                 VIQVHLKRKLEYSHNFMTETIRPARVIQAVRYLVNTELYRKHNISFDRDWL
FT                 NQMGAEEEIPFIADESDREVVEELLRQHSHSQSNDAQEGDLNPGGHETLLE
FT                 NDDIGLQRIAMAPGEGRIPTNLTLDDDAEELSFPTISCGEIFKGNSTYAKK
FT                 ARSQIRFYDRRCAVVPKVLYMYKFYEMQRIQSSISIALRKKSGAVTAANVR
FT                 DNSFVDSLVQHDDGFHILKGLRSXPAHWEAEKKKVIAMIGQFGLPTFFITL
FT                 SAAESKWNELLVILSLLLDSRDITEEEAAEKARLIRSDPVTCSLYFDYRFR
FT                 QLMKLFKSFEIFGGLRLVHYYWRIEFQHRGSPHSHGMYWFSGAPKLEGPDN
FT                 AEEVTRFIDRFITTSGDDPEIHEVIQYQRHKHSASCLRELRGQQFCRFNVP
FT                 YPPMPETLVLYPFEENESNVEEYKEIFKKVKELLKSVSEEESAMFNNFEYF
FT                 LSHLEISYEEYKFAIRSSLKKPQVFLRRQFSDRLLNAYNRNILGLHRANMD
FT                 IQFILDAYACCSYIINYINKSNRGVSQLLREAMTEISHGSVSVKRKLQHLG
FT                 SKFINATEISAQEAAYNILGLHLSEASEGNVFINTCHPDKRVRIVRSNREL
FT                 EQLPANSTDIFERNLLDRYVQRHEQLESLCLAEFAAWFKFSKLNARSEQSN
FT                 EEYDEPIDFDADEENNVAAQSYQMLDGTGRVKRRNHALILRWVRFSLSSSP
FT                 SDYFREHVMLFFPWRSEETELISNDNESTFRNNFEIIKRNKEQYDVFDDME
FT                 LERVLQDLQNVDREENGPLPEGPASQYLDEEFRALAVPDVGQNVNVLQDEN
FT                 DSNGELPLIRLPPMVSDDNLCSLTRSLNFKQRQYYAHVMYNVAAKKTFYEY
FT                 VGGGAGVGKSRLISTIFQSITWRANKLPGATDSAKVLLCAPTGKAAFGIGG
FT                 LTLHSVFSLPVNQTSGPLRPLSNDTLNTMHCKLIDIQLIIIDEISMVGSKM
FT                 LGYLDQRLCQIFRSQDVSFGGKSIIVFGDLKQLSPVGDRWIFAENTSNPYN
FT                 ILAGANLWNNFKFFELTEIMRQRDDHAFALALNNMSEANMTDADIELFRTR
FT                 VLPVTDVPDDAIHLFCSNADVNHYNSLKLAQIRTEEFVSTAVDTVKSANMS
FT                 ERSRESTLRHAQNMKTSETQGLPYILHLKTTAKYMVTVNIDTNDGLVNGAT
FT                 GQLMRIDNCMVNGSLLVTGLWIKFTDATVGTIARSKVRGNDHPDWTPIYKT
FT                 ARVFQCGNSGHSSIDRKQFPVVPAEAITIHKSQGATYSKVAVHLKRGIKRA
FT                 SLYVGCSRATSASGLFLLGDFVPPTRFGATNVQVELERLRGEKALTTHYEF
FT                 LVNENEDISLYYHNVESLRAHREDVANDNIICSANFLCFVETWTLPQEEYT
FT                 LRDFDIIRRIDCNRLNGIGKNGILIYAKQNISQNVLFLFETKKSTNTRATY
FT                 QSIAFKYLDTSFIIVYRSPGFPIARFRNEIKADVEKVRRMDNTKVVILGDF
FT                 NICRSTGTDILEEHLNAYNLFSINDSPTTKQITQIDWIFSDSRIPQALAIT
FT                 YETPYSHHDGIFFKYSL"
XX
SQ   Sequence 8786 BP; 2820 A; 1714 C; 1803 G; 2446 T; 3 other;
     tatacccttg cagagggtat aatgatttca gtcagaagtt tgcaacgcag tgaaggagac        60
     gtttccgacc ccataaagta tatatattct tgatcagcat cattagacga gtcgatctag       120
     ccatgtccgt ctgtccgtct gtccgtccgt ttctacgcaa actagtctct cagctttaaa       180
     gctatcgggc tgaaactttc ccaaaagtct tatatctttt gcaggtagta tataagtcgg       240
     aaccagccgg atcggacaac tatatcttat agctcccata ggaattctct gaaaaaaaaa       300
     tgttaaaaaa ttatatcttt ggtgcttttt aacatattac ctcctttcct tggaaataac       360
     attttttaat tagttttgaa tttcgaatta aattttatca aaatcggaag actatatcat       420
     atagctgcca taggaacgat cgtaaaattg gtgggaaaat aatataaaac aaattatagc       480
     ttcggtgttc cttaacatat agcatcctac gcttggaaat aacatttttt aattagtttt       540
     gaatttcgaa tttaatttta tcaaaatcgg acgacaatat catatagctg ccaaaggaac       600
     gatcgtacaa ttggaaataa tggacgactc taacatatag ctgtcaaaga aacggtcagc       660
     gaaataatga aatatttatt atacccttgc atttattatt tttatattat ttttttgtaa       720
     ttgatttttt taaccatgtc cgtctgtctt aaagctatcg cgcttttcca aaagtctact       780
     ttcttatgca gaaagtatat aagtcggaac cagcctgatc ggacaactat atcttatagc       840
     tcccatagga ataatcgaaa aaaaattttt tattatacct acgcttggaa ataagatttt       900
     ttaattagtt ctgaatttcg aatttaaaat ttaaaaataa aatgaaacaa attatatctt       960
     cggtgtttct tggcatatta ttatctagca taagatggga ataacatttt ttgtattttt      1020
     aagaatttcg tatttaaatt taatttaaat cggacgactc taacatatag ctgtcaaaga      1080
     aacggccagc gaaataatga aataattatt taaaaaaaat tatttttgct ttgttgattt      1140
     tgatcgtatt ttcctctaca ctgggtatag attattttaa cttttcagaa ttacgaaact      1200
     aattttacac aataaactga cgactataat attttgctga atggggtggt gttaggacac      1260
     gaataacatg gatacaggtg tccaaattat aaggtaggat acccgttttt cctattttag      1320
     attacagaaa taaccttaac aaggttgcca cgaagctaga taacaggtaa taatgcagtt      1380
     attacgcaat ccttaaatta ggtaatcaac ttggcttacc taatttacct acgaattgtc      1440
     cctaaaatca ggcattgtcc gccatcgaaa gggttatatg aaggttaata gcaggtatga      1500
     ttcaaaccta tatattgact cgtaatccta atccccggat tagtctgtga aaaccagttg      1560
     ccgagtgaca acgtatacat tgttgtgtgt atcttttata ttcaattaat ataaacacac      1620
     cgaaagtata aggtgaaaag tgaatgaaaa tccaccaaaa agtacaaggt gaaatgtgaa      1680
     tataagccca taaaaaagta aaaggtgaaa agtgattaaa aatccaccaa aaggtataag      1740
     gtgaaaagtg aaaaaagtgt gtaacaaaat aataaagtat tattatattt ttttcctttg      1800
     gtaagtattt ctataaagta aaacaggatt cataaattcg tatcacataa gtctcttctg      1860
     gtgaaattca ggtggaacat caatgaacat caataaatat ttaccagaat cccgaccaaa      1920
     gagattttga aaatctctga caaattataa ccccttaact tttatacaat tattttttaa      1980
     cagcaaaata aagagaatgc cgcgcatatc ttctttatct caagagcagc gccgccaagc      2040
     tgcgcttaga cgaagccgag cccaatatgc tcaaaatgcg tcacaaataa ggacccgtaa      2100
     tgcgcagcac attgccttgg cccgtacaag taatttggag gtagcagaag aagctcgctc      2160
     gcgaaattcc gctgctcgct ctcagagaag gagaagcgaa agaattcgag ccagcgaacg      2220
     attgaggaac actgacaatc gcgctacctg gagagcgaac gaggaaaatc gaggactcga      2280
     gcgcacacgg gacgctgaag cgcacgcaag cgccaggtcg aattccgaag agcgacgacg      2340
     acagcaggtg caaaatactg ctgaccatgc tacctggaga tcgatcgggg aaaatcgagg      2400
     actcgagcgc acacgggacg ctgcagcgcg cgcaatggtc aggtcggatt ccgaggagcg      2460
     acgacgagag cagtcgcgaa acactgctga tcatgctacc tggagatcga tcggggaaaa      2520
     tcgaggaccc gagcgcgcac gggacgctgc agcgcgcgca atggtcaggt cggattccga      2580
     ggagcgacga cgagagcagt cgcgaaacac tgctgatcat gctacctgga gatcgattgg      2640
     ggaaaatcga ggacccgagc gcgcacggga cgctgtagcg cgcgcaatgg tcaggtcgga      2700
     ttccgaggag cgacgacgag agcagtcgcg aaacactgct gaccatgcta cctggagatc      2760
     gatcgaggaa aatcgaggac tcgagcgcac acgggacgct gcagcgcacg caagcgccag      2820
     gtcgaattcc gaagagcgac gacgacagca ggtgcaaaat actgctgacc atgctacgtg      2880
     gagatcgatc gaggaaaatc gaggaccaga gcgcgcacgg gacgctgtag cgcacgcaat      2940
     agtcaggtcg gattccgagg agcgacgacg agagcagtcg cgaaacactg ctgatcatgc      3000
     tacctggaga tcgatcgagg aaaatagagg actcgagcgt ttacgggacg cagcagctca      3060
     taggatcacc aggaacaacc ctatcactag gacacaggag caaaggacca acacagtgca      3120
     tcatcggaac acaagacttc agcaaagatt tcgggaacaa caaattcagg aaatggctga      3180
     cgagcgactt ctcacataca ggtcgagttc acaaaatcga caggcggaat cttccagaca      3240
     gtcacagcgc aatattgctg caagagcaca actttcagag gatgaacgag aggatcaacg      3300
     ggaacgccag cgacggagga gtcgagctac ggcaagggaa caatatcttc gtaacattaa      3360
     ggacggacca actaagtttt gtacgtgctg tggaggaacg tggtttccat ctcaggtaag      3420
     tggtttgaac atacgtacta tttcttctaa ataccccaat tttagtctag acaatgcctt      3480
     ttatttaagc agaaagtttc cgagtccgtc cggcaaatat caattttgca gtacatgtcg      3540
     tcaaggcgtt tccaaaggta ggataccatc cctttgtctc tctaatggct tcgactttcc      3600
     agagatacct gaatgcctta aaaacttgac atgtcttgag gagcgcctta tttctcctcg      3660
     aattcccttc atgcgcatta tatcccttgg atatgaaagg caatgcggaa taagaggcgc      3720
     tgtagtcaat gttccaattt cagtacctga tactgtaagc gtactcccgc gcacctttga      3780
     ttcgacccat gtaatccagg ttcatttaaa aagaaagtta gaatattccc ataatttcat      3840
     gacggaaact attcgacccg ctcgggttat tcaagctgtg cgatacttgg ttaacactga      3900
     gctctacaga aagcacaaca tttcctttga ccgtgattgg ctcaatcaaa tgggagccga      3960
     agaagagata cctttcatcg cagatgaatc tgaccgagaa gtcgtagaag agcttcttcg      4020
     tcaacattct cattctcaat caaatgacgc gcaagaaggt gatttaaatc ccggaggtca      4080
     tgaaacccta ttagaaaacg atgatattgg acttcagcgt attgctatgg ctcccggaga      4140
     aggccgcatt ccaacaaatt taacccttga cgacgacgca gaagaacttt ccttcccaac      4200
     tatttcttgc ggcgaaatat ttaaggggaa ttcgacctat gcaaaaaaag caagatcgca      4260
     aattcgcttt tacgaccgtc gttgcgcagt agtgcccaaa gtcctttata tgtacaaatt      4320
     ttatgaaatg caacgaattc aaagttctat ttccattgcc ctacgaaaaa aatcaggtgc      4380
     agtaactgct gcaaatgtga gggataattc atttgttgac agtcttgtac aacatgacga      4440
     tggatttcac attctaaaag gcctccgttc agmtccagca cactgggagg cagaaaaaaa      4500
     gaaagttata gccatgatag gacaatttgg gttgcctaca ttcttcataa ccctctctgc      4560
     tgctgaatct aaatggaacg aactcttagt tattctatct cttttattgg atagcagaga      4620
     cattactgag gaagaggcag cagaaaaagc tagattaatt cgatcggacc cagtaacgtg      4680
     ctccctgtac ttcgactaca ggttccggca attaatgaaa ttatttaaaa gcttcgagat      4740
     atttggtggg ttaagactcg tccattatta ttggaggatc gagttccagc acagaggatc      4800
     gccgcactct catggcatgt attggttttc tggtgcccca aagctagaag gacccgataa      4860
     cgccgaagag gtcacccgct ttattgatcg tttcattact accagcgggg acgatcctga      4920
     aattcatgaa gtaattcaat atcagcgcca taagcacagc gcttcatgtt taagggaact      4980
     gcgaggacaa caattctgcc gttttaatgt gccataccca ccaatgcctg aaactctggt      5040
     tttgtatcca tttgaagaaa acgaatccaa cgttgaagaa tataaagaaa tatttaaaaa      5100
     agttaaagag ctcctaaagt ctgtttccga agaagaatcg gccatgttta ataattttga      5160
     atattttctc agccatcttg aaatttcata tgaggagtac aagttcgcca ttcggtctag      5220
     cttaaaaaag ccccaagtat ttcttcgtcg ccaattttct gataggttgc taaatgctta      5280
     caatagaaat attttaggct tgcatagagc aaacatggat attcaattca ttctagatgc      5340
     ttacgcctgt tgtagttata taattaacta cataaataaa tccaaccgtg gcgtgtcgca      5400
     actgcttcga gaagcaatga cagaaataag ccatggaagt gtttccgtca aaagaaaatt      5460
     gcagcattta gggagcaagt ttattaacgc tacagaaata tctgcccaag aagctgcata      5520
     caacatttta ggtttacact tgtctgaggc tagtgaaggg aatgttttta ttaacacttg      5580
     ccatccagat aaaagggtcc ggatagtccg atctaacaga gaattagaac agcttcccgc      5640
     aaactcaaca gatatttttg agcgaaattt acttgatcga tacgtgcaaa gacatgaaca      5700
     actagaatcg ttatgtcttg cggaatttgc ggcttggttc aaattctcca agctaaatgc      5760
     acggtcagaa cagtcaaacg aagaatatga cgaaccaatc gactttgatg cagatgaaga      5820
     aaataacgtt gctgcacaaa gttaccaaat gctggatggg actggtaggg taaaaagacg      5880
     taatcatgcc ctaattctta ggtgggttcg cttcagttta agctcttctc catcagatta      5940
     ttttagagag cacgtaatgc tctttttccc atggagaagt gaagagacgg aactcatttc      6000
     aaacgacaat gaaagcacat ttagaaacaa ttttgaaatt attaaacgca ataaagagca      6060
     gtatgatgtg tttgacgaca tggagttaga gagagttctt caagatctgc aaaatgtgga      6120
     tagagaagaa aacggccccc ttcccgaagg gccagcctct caataccttg atgaagagtt      6180
     cagggctttg gcagtmcccg acgtcggcca aaacgtaaat gtactccaag atgaaaatga      6240
     ttcaaatggc gaacttcctc ttataagact tcctccgatg gtatctgacg ataacctttg      6300
     ctcgcttacc cggtctctca actttaagca acgccagtac tacgcccacg taatgtataa      6360
     tgttgcagcc aaaaaaacat tttatgaata tgttggtgga ggggccggag tgggaaaaag      6420
     cagattgatt tctacaatat ttcagtctat aacttggcga gcaaataaac ttcctggggc      6480
     aacagattcc gcaaaggttt tactttgtgc tcctactgga aaagcagctt ttgggattgg      6540
     gggactaacg cttcattcag ttttctccct tcctgttaat caaacatctg gtcctttaag      6600
     acccttaagc aatgacactt taaatacaat gcattgcaag ttgattgata tccaattaat      6660
     tattatagat gagatctcga tggtcggatc aaaaatgctt ggatacttag atcaaagact      6720
     ttgtcaaatt tttagaagtc aagatgtaag ttttgggggc aagtctataa tagtgtttgg      6780
     agatctgaag cagcttagcc cagttggaga tcgttggata ttcgcagaaa atacatctaa      6840
     tccctataat attctggcag gagctaacct ttggaataac tttaagtttt tcgagctaac      6900
     ggaaataatg cggcaacgtg acgaccacgc ttttgctttg gctttgaata atatgtctga      6960
     agccaacatg acagatgcag atattgagct tttcaggaca agagttcttc cagtaaccga      7020
     tgttcctgac gatgcaattc acttattctg ttctaatgct gacgtaaacc attacaactc      7080
     cctaaaactt gcccaaatta gaactgaaga atttgtgtca actgcagtag atacagttaa      7140
     gtcagctaat atgtctgaaa gaagtcgaga atcaactctt aggcatgccc aaaacatgaa      7200
     gacctctgaa actcagggtc taccatatat tttacacctg aagactactg caaaatatat      7260
     ggttaccgtc aatattgaca caaatgatgg acttgtaaat ggggcaactg gtcaattaat      7320
     gcgaattgac aactgtatgg ttaacggctc attattagtt actggactgt ggattaagtt      7380
     tacagatgcc actgtcggta ctatagctag gtcaaaagtt cgaggaaatg atcacccaga      7440
     ctggactcca atttataaaa cagcccgagt attccaatgc ggaaattcgg gacattcttc      7500
     tattgatcga aaacaatttc cagttgttcc tgctgaggct attaccatcc ataagagcca      7560
     aggagcaacc tacagcaaag tcgcagtgca tcttaaaaga ggcattaagc gagcttcgtt      7620
     gtacgtaggt tgcagcagag caactagcgc atcgggcctt ttccttttag gagactttgt      7680
     ccctccaact agatttggag ctacaaatgt ccaagtagaa cttgaacgtt taagagggga      7740
     aaaggctttg actacgcatt atgaattttt ggtcaatgaa aatgaggata tctctttata      7800
     ttaccacaac gtggaatctc ttcgcgctca tcgcgaagat gttgccaacg acaacattat      7860
     ttgttctgcc aactttttat gttttgttga aacctggact cttccacaag aagagtacac      7920
     tttaagggat ttcgacatta taagaagaat agattgcaat cgtttgaatg gtattgggaa      7980
     gaacggaata cttatttatg ctaaacaaaa catttcgcaa aatgtattat ttctgtttga      8040
     gacaaagaag tccacaaaca caagggcaac gtatcaatcg attgcattta aatatcttga      8100
     cacgtcattt ataattgttt ataggagtcc cggatttcct attgcaagat ttcgaaatga      8160
     aattaaagct gatgtggaaa aagtgcgtag aatggataat actaaagtag taatattagg      8220
     agattttaat atttgcagat ccacagggac tgatattctg gaggaacact tgaatgccta      8280
     taacctcttt tcaatcaatg attctcccac aacaaaacaa ataacacaaa ttgattggat      8340
     attttcagat tctcgaattc cacaagctct tgccattact tatgagacac catatagcca      8400
     ccacgatgga atttttttta agtatagctt gtagtaggta atataattaa atatataaat      8460
     tgtaaaaatt gtaataggtt agaaaaaata ataattgtat atagcawatt gtatatatgt      8520
     atttttatgg tattattaat ttatttattt ctatctatca acgtagtttt caaaattgta      8580
     tatatatatt atataaatga taatattttc cccctcgtgg attgtgacct tgacgtggtg      8640
     tgggggctga gtacgtgaaa ttgttttaat atcactgaag ctagcaacaa tccttaaaat      8700
     gtaacatagt gttactaaca ttgattattt cttataactg caagggtatt caaacttcgg      8760
     cttgccgaag ttaacttcct ttcttg                                           8786
//
ID   Helitron-1_DVir repbase;    DNA;    INV; 8816 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   19-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   Autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; Helitron-1N1_DVir; Helitron-1_DVir;
KW   helentron.
XX
NM   Helitron-1_DVir.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-8816
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 130-130 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of autonomous Helitron
CC   transposons transposed in the Drosophila virilis genome a few
CC   million years ago (copies are less than 5% divergent from the
CC   consensus sequence). The Helitron-1_DVir consensus sequence
CC   encodes the 2118 Hel-1_DVirp protein composed of the REP, HEL,
CC   and apurinic endonuclease domains. Helitron-1_DVir elements and
CC   non-autonomous elements transposed by the Helitron-1_DVir
CC   enzymatic machinery (e.g. Helitron-1N1_DVir) are usually inserted
CC   in the TTT|TTT target sites without the target site duplications
CC   (the insertion site is marked by "|"). Different families of
CC   Helitrons constitute ~5% of the D. virilis genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           2285..8638
FT                 /product="Helitron-1_DVirp"
FT                 /note="HUH nuclease, DEAD-like helicase, and
FT                 apurinic-like endonuclease."
FT                 /translation="MPRTKKLSVLNRARRQQARNELNRSNSEYAEHERINN
FT                 IESQRERRENEGFSQTERNRNRQRNQVRRQYIVYRANEQRQNTVDHSSRRA
FT                 NSPVREQEQLANTSRRSTRRQDPVYRANEQRQNTVDHSTRRANSPVRQQEQ
FT                 LANTSRRSTRRQDPVYRANEQRQNTVEHSTRRANSPVRQQEQLANTSRRST
FT                 RRQDPVYRANEQRQNTVDHSTRRANSPVREQEQLANTSRRSTRRQDPVYRA
FT                 NEQRQNTVDHSTRRANSPVRQQEQLANTLRRSRRRENPVYRADEQEQDNIR
FT                 RARHRQDIQRRLLERARDRNQRSQVRENPIRRIIEQARNTSVRRSARIHAR
FT                 QEAFDANRSLSQRVSQYRGNTGNRIAENRRNATRNRGERAINFSEDRISPA
FT                 IRSSLDGLIAGFNRTVKQGPDQVCLCCKGLWFPHQVEKISREVIESKCSAE
FT                 VSSDILYLSSIFPSDNNKYDFCKTCSRSIKLGKKPKTSITNGLDFPDLPDC
FT                 LKGLTPLEERLISPRLPFMIIKSLGYGRQNAIKGAVVNVPIPVANVVTSLP
FT                 RAFNESEVVQIHLKRRMEYIHDFMAETIRPSKVAEAIKFLVNTELYRKHQI
FT                 TINEQWLSSFSSDEVPFVASADDRDLVSQLVARSAQASIDEQNNIEEDINP
FT                 GGQETLLENVPVENIAMQRIVIAPGEGQRPLDMIEDCDSEELAFPTIFAGI
FT                 KRKCAESFTTIVRSELRNFDRRGCRTDKLFLNFKKLEMINIRNSTSICLRK
FT                 HSATRGITAAQVLNEEYLENLIRHDDCYRVLKNIRTSPAHWEGEKKKVMAM
FT                 IRQIGLPTFFITFSAAETRWAELLVLLSKNVDKLEISEELAANLSFANKAR
FT                 LIRADPVTCARYFDFRYRQVLKLMKKEGGVFGSHRVIKYYWRVEFQQRGSP
FT                 HVHGMFWLKDAPIVDLADESSIPSVKSFIDQFITTETNNPDVAPFLEYQTH
FT                 NHGHSCRREVRAQNICRFGIPYPPMPQTEILFPLEEDAENKEVHRRNFEKI
FT                 QGVLEYPFDRESIDYLSDFNNFLTHDQLNLSYECYINALRSSIKKPKIYLK
FT                 RSFAAIKLNAYNTHLLLLQRANIDIQFILDPYACCSYVVNYINKSQRGISK
FT                 LMREAVSEISRGNVTLKQRLQHIGHKFISGTEISAQEAVYCCLGMSLSESS
FT                 NAVVFINTSLPENRVGLRKSKQQLQNLPDDSVAILEIGLIDHYVQRPDALD
FT                 SLCLADFAAFYSFSKRHSGTRQNIDDADDIETSRASQQLVYALRDGSGFVK
FT                 KRNTPIIIRYRRFNINTDRSNYFRELVMLYVPWRDENVELVARDCESFCGQ
FT                 NHELIESNRRKYNSLNDSELQHALENAVQAENEENVENQEVVDDRFRVLGL
FT                 PEINPHLNVLNINGNDENLDSEDNNVRLIKLPAIVSAESLADIVRSLNLKQ
FT                 KTYFTHVLHNAKNKSVFYEFVGGGAGVGKSRLILALFQSLSVMYNSRPGSD
FT                 PNSPKIILCAPTGKAAFGISGSTLHSMFSLPVNQSGSDLRALSNDLVNTLH
FT                 SRLIDLKLIIIDEISMVGSKMFSQLDSRLKQIFKNTSPFGGISVIVFGDLR
FT                 QLSPVGDRWIFESNSNDPYSAIYASLLWDLFKYFELTEIMRQREDQPFASA
FT                 LNNMASGNMTADDISLVRSRICQQSDVPDDAIHLFSTNAATDSYNTIKLNS
FT                 IPTDQFISTADDFIKATHLTAACRQRILEAVSSFRSSETQGLCMSLLLKTT
FT                 AKYMITVNVDTGDGLVNGATGMLMQIDFDASSTPIILWMKFSDDTVGVLAR
FT                 SKCTHRTEPFWTPIQKIVKSFQYRRNEQVSIDRRQFPVVPAEGITIHKSQG
FT                 ATYSKVVVHTCSRMQRAAIYVACSRATTASGLFIIGDFVPPKPPKNDDKVQ
FT                 NEIEKLRTGKLLRTHYDHLVNSSALDIFFHNTESIHCHIEDIRSDKLMLQS
FT                 SVLCFVEASTYSNENIEIPGFTVVVRLDCEVIPNAPRPKRGIVIYIKNAIL
FT                 NNISNCFSGRQISGSFVFEHAIFRYKSVCFLVIYKSPSYPLGLFKTEFEVL
FT                 FQQYLFLRERCIVLGDFNLCLSKFDRCRALYDELLRKGLRCLLDLKTPTTN
FT                 CDSHIDWAFSNLSSEEVSARTLETVYSYHSGISLTVQDRVN"
XX
SQ   Sequence 8816 BP; 2831 A; 1575 C; 1758 G; 2652 T; 0 other;
     ttataccctg aacccattaa aaatgggtac aagggtatat tgtatttgtg caaaatccaa        60
     atgtatgtaa caggcagaag gaagcttcac cgaccccata aagtatatat attcttgatc       120
     agcatcaata gccgagtcga tctagccatg tccgtctgtc tgtccgtccg tccgtccgtc       180
     cgtccgtccg tatgtatgaa cgcacggatc tcagaaccta taagagctag agacttgaaa       240
     tttgaaagtt ttagatgtag atgctcctag ctcccgcgca gatcgagttt gtttccgata       300
     atcgataact tgctccgttt ccaagcaatc gataaaaatc gatatcgata tcctgttttt       360
     tgggcaattt tggtaaataa taagagctgg agtcaccaaa catgatatgt tgcttctaga       420
     atattatata tatgtcaagt atctttcatt ttatacctat cgccaccccc ccgctaccac       480
     cccagagcta taaatcaagt taataaccca acttgtatcg ccaaccaata taagctagaa       540
     tttaaatgca attgactttt tcagaataca caaatattct atggtacaat aagatatact       600
     gtataaaatt tcatcaagat cggttaagat acatagaagt tattaaagaa accatgtggt       660
     tatatgtata tgtacatata tattggcagg ccacgagtca gcggcagctg gcacaaattt       720
     ctgtatacat gtgcactaat acacacaaaa agaattacaa ttgcgattgc atcgtatgct       780
     ctatgtacat atgtggtcct attttagttc agtttttttt caattagtag caactttcgg       840
     tatggctgca aggtaaaaag ccacgggaag cagttcaatt gttatatgtc tggaataagc       900
     ggcgcaagtt caattccaat ggggaaaaag aatttttttg actatttatt atttgtctaa       960
     taatgttagt tttattcctt cacccattaa aaacggaaat aagtcaagag aatgcttttt      1020
     ttttgcttaa agccctagta agcttggcaa gtgcgtagtg cgagctattt caggtaaggt      1080
     atgcataaat atccatgcat cttaatcact aaaatgtcaa tttacgcaaa atttaatttc      1140
     ctcattcaga aatcatattc tttattaaat cttacaaaag aatgtaatca tatgtattta      1200
     tatctatttt catacataca tacgttttag gcttaggcct aaccagtgcg tatacacata      1260
     cgtatataca ttataataat ttacatatgt acatatgtgt gtttgtacac attattttct      1320
     tcccgcaagt agtcgaagac cacgaagtgg aacttttcaa cactgttact ataaatctgc      1380
     gcgcgtaatt tgagaatttt atttcgtaaa tatttattat agttacatga ttttaataat      1440
     tcataagaca gtcttaagga ggttgactga tgcattaata aatattatca ttagattaat      1500
     gttattatat atgtgattat aataataaat aaagtagcgc gcgcatttcg atatgtatac      1560
     taaatcgtgg cgttaggaga gtgaatattt cccaacactc tctcttcaaa tgtgctcaga      1620
     agaagcagta atcgatttag tctgtagcct gcgattgcca tcaaactacc actaaccaaa      1680
     cagcatatag atggaacgtg ccgtagaagc aaaatgggca caaaaagtgc ctgttttggt      1740
     tttgtgattt gtgatttttg cgtttcttac tgatctaaca acgattttta ttcgaataaa      1800
     ctatattcta tcggttccga gcggttgaaa ataaataaat tgcagtgttt tgtgaccatt      1860
     ttaataaaaa cagtgaatta tcgatgaatt accgataaaa atagttttcg gccgttacaa      1920
     cttggcgtgt atgtgcaagt gtgtgattga cacttattag gaatcgtatt tgtgcgaatg      1980
     caattcacac agctggtgtt gtaagggaag ttttggagaa ccattttagc tgaaatcgca      2040
     aaaatcgcaa gtttttaaat ataattataa ttttaaagtc tttttaaaga ctatacaaat      2100
     attacctact ttttatttat tccagacata tatatatatc tatatataca tataatatat      2160
     ataaattata taaattaatt ttaataaatt ttattgcaaa taatttattg gaattaatta      2220
     atttaaatta cgaattttac tatattacat ttttattttt attaaagttt taaagttaag      2280
     taaaatgcct aggacaaaaa agttgtcagt tttgaatagg gctcgtagac aacaagctag      2340
     aaatgagcta aataggtcta attctgaata tgctgagcat gaacgtatca acaatataga      2400
     gtcccaacga gagcgtaggg aaaatgaagg ttttagccaa actgagagaa ataggaatag      2460
     gcaaagaaac caagttcgca gacaatacat agtttacagg gcaaacgaac aaagacaaaa      2520
     tactgtagac cactcgagtc gacgagctaa ttctccagtt agagaacagg agcaattggc      2580
     taatacttcg cgtcgatcga cacgcagaca agacccagtc taccgggcaa acgaacaaag      2640
     acaaaatact gtagaccact cgactcgacg agctaattct cctgttagac aacaggaaca      2700
     attggctaat acttcgcgtc gatcgacacg cagacaagac ccagtctacc gggcaaacga      2760
     acaaagacaa aatactgtgg aacactcgac tcgacgagct aattctccag ttagacaaca      2820
     ggagcaattg gctaatactt cgcgtcgatc gacacgcaga caagacccag tctaccgggc      2880
     aaacgaacaa agacaaaata ctgtagacca ctcgactcga cgagctaatt ctccagttag      2940
     agaacaggag caattggcta atacttcgcg tcgatcgaca cgcagacaag acccagtcta      3000
     ccgggcaaac gaacaaagac aaaatactgt agaccactcg actcgacgag ctaattctcc      3060
     agttagacaa caggagcaat tggctaatac tttgcgtcga tcgagacgca gagaaaaccc      3120
     agtttatagg gcagacgaac aagaacaaga caatattcgt cgagctcgcc atcgacaaga      3180
     catacaacga cgacttttag aaagagctag ggataggaat caaagatcac aggttagaga      3240
     gaatccgatt cgtaggataa ttgagcaggc acgtaacaca agtgtgaggc gaagtgctcg      3300
     cattcatgca cgacaggagg cttttgacgc caatagaagt ttgtcccagc gagttagcca      3360
     gtataggggt aatacaggta ataggatagc agagaatagg cgcaatgcta cgaggaacag      3420
     gggtgaacgt gcgattaatt tttcagagga tagaatctct ccagctatta ggagtagctt      3480
     agatggtctg atagctggat tcaatagaac agttaagcag ggtcccgatc aggtttgcct      3540
     ttgttgcaaa ggcttatggt ttccacatca agtggaaaaa atttctcgtg aggttattga      3600
     aagcaagtgt agtgcagaag taagctccga tattttatat ctttcctcta tatttccctc      3660
     tgataataat aaatatgatt tttgcaaaac gtgtagtcgt agcattaaat taggcaaaaa      3720
     acctaaaact tctattacaa atggcctaga ttttcccgat ctgccagatt gtttgaaagg      3780
     cttaacgcct ttagaggaaa ggctgatttc ccctcgcctt cctttcatga ttattaagtc      3840
     attaggatat ggtcgacaaa atgcaattaa aggagcagtg gtcaatgtac ccattcctgt      3900
     ggccaatgtt gtaacgtccc ttccgagggc gtttaatgag agcgaggtag tgcaaattca      3960
     tctcaaacgt aggatggaat atatccatga tttcatggct gaaaccatta ggccttctaa      4020
     agttgctgaa gcaataaaat ttttagtcaa caccgagctt tatagaaagc atcaaattac      4080
     tattaatgaa cagtggttgt cgtctttttc gtctgacgag gttccgtttg ttgcatctgc      4140
     tgatgacagg gacttagtat cgcagttagt ggcaagatct gctcaagcct ccatagatga      4200
     gcagaataat atagaagaag atattaatcc aggaggccag gaaacattat tagaaaacgt      4260
     ccctgtcgaa aatattgcca tgcaaagaat agttatagcc cctggagagg gtcagcggcc      4320
     tttagacatg atcgaagatt gtgattcaga ggagctggcc ttcccaacta tttttgctgg      4380
     cattaagaga aagtgtgcag aaagttttac aaccatagtt aggtcagaac ttagaaactt      4440
     tgataggaga ggttgtagaa cagataaatt atttctcaat tttaaaaaat tggaaatgat      4500
     taatataagg aacagtactt ccatttgctt acgtaagcac agcgccactc gaggcattac      4560
     ggcagcacaa gtccttaatg aggagtattt agaaaattta atacgtcacg atgattgcta      4620
     tagggttttg aaaaatattc gcacttcacc tgctcattgg gaaggagaaa agaagaaggt      4680
     catggcgatg ataaggcaga ttggtcttcc gacatttttt ataacctttt cggcagcaga      4740
     gactagatgg gcagagctgt tagttttact ttctaagaat gtagataagc tagaaatttc      4800
     agaagaattg gcagctaatt taagttttgc caataaagcc cgtctaatta gagccgaccc      4860
     tgttacttgc gctaggtatt ttgattttcg ttacaggcag gttttaaaac tgatgaaaaa      4920
     ggaaggcggt gtttttggta gtcacagagt tattaagtat tattggcgag ttgagtttca      4980
     gcaaagaggc tccccccacg ttcatggcat gttttggctg aaagatgctc cgatagttga      5040
     cttggctgat gagtcaagca ttccgtctgt aaagtccttt attgatcagt ttatcacaac      5100
     tgaaacaaat aacccggatg tggctccatt tttggagtat caaactcaca atcacgggca      5160
     ctcatgtagg cgagaagtta gggcacaaaa tatatgtaga tttggtattc cataccctcc      5220
     catgccccaa acagaaattc tattcccatt agaagaagat gctgaaaata aagaagtgca      5280
     tcgcagaaat ttcgaaaaga ttcagggagt tttagaatat ccgtttgatc gagaaagtat      5340
     agattacctt agcgatttca ataacttttt gacccacgat caacttaact taagttatga      5400
     gtgctatata aatgcactca ggtcgagtat aaagaagccc aaaatatatt taaagcgatc      5460
     attcgcagca attaagctta acgcttataa tactcacctc cttctactgc agcgcgcgaa      5520
     tatagatatc cagtttatat tagatcccta tgcttgctgc agttacgtcg ttaattatat      5580
     taacaagtcc cagagaggca tttcaaagct aatgcgtgaa gctgtaagtg agataagcag      5640
     gggcaatgta actttaaagc aaaggttaca gcatataggg cacaagttta tttcgggtac      5700
     ggaaatatcc gcccaggaag ccgtttactg ctgtttaggt atgtctttgt ccgaaagcag      5760
     taacgcagtg gtttttatta atacctcatt accagagaat cgggttgggt taaggaagtc      5820
     taagcaacag ttgcaaaact tacccgatga ctcagtagca atattggaaa ttggacttat      5880
     agaccattat gttcagcgcc ccgacgcttt agatagttta tgcctagctg attttgctgc      5940
     tttttacagc tttagcaagc ggcatagtgg tactcgccaa aatatagatg atgctgatga      6000
     catcgaaaca tccagggctt cccagcaatt agtttacgca cttcgcgatg gtagtgggtt      6060
     cgtaaagaag aggaacactc ctattataat taggtatagg agatttaata ttaatactga      6120
     taggagcaat tattttcgag aattagttat gttgtatgtc ccatggaggg atgaaaatgt      6180
     agaactagta gcaagagact gcgaatcgtt ttgcggccag aatcatgagt taattgagag      6240
     caatcgcagg aaatacaata gcttaaatga cagtgagctt cagcatgctc ttgaaaatgc      6300
     agtgcaggca gaaaatgaag aaaatgttga aaatcaagaa gtagtagacg atagatttcg      6360
     cgtattagga ttaccagaaa taaatcctca tttaaatgtc ttaaacatta atggaaatga      6420
     cgagaatcta gattcagaag ataacaatgt ccgattaata aaacttccag ctatagtttc      6480
     agctgaaagc ttagcagata tagtcaggtc acttaattta aagcagaaaa cttattttac      6540
     acatgtttta cacaatgcca aaaacaaatc cgtcttctac gaatttgttg gaggtggtgc      6600
     gggtgtcgga aagagccgac ttattttagc tctttttcaa tctttgtccg ttatgtacaa      6660
     tagtaggcca ggaagtgatc caaattctcc taaaataata ttgtgtgctc caacaggtaa      6720
     agctgctttc ggaatcagtg gctcaacact gcattccatg ttttccttac cagtaaatca      6780
     atctggttcc gatttgaggg ctttaagtaa tgatttagta aatactttgc attcaaggtt      6840
     aatcgacctt aaactaatta ttatagatga aatatctatg gtaggctcca aaatgttttc      6900
     ccagttggac tcccgtttaa aacaaatttt taaaaatact tctccattcg gtggtatttc      6960
     tgtcatagtt ttcggggatc tacgacaatt atctccagta ggtgaccgtt ggattttcga      7020
     atccaactct aatgatccct acagtgcaat ttatgcttca ttgctgtggg accttttcaa      7080
     gtattttgaa ctcacagaaa taatgcgtca acgggaggac caaccgtttg cttctgcttt      7140
     aaataatatg gcatcgggaa acatgacagc cgatgatatt agtcttgtcc gatctcgcat      7200
     ttgtcagcaa tcggatgtgc ccgatgatgc cattcatcta tttagtacaa atgcggcgac      7260
     agatagttat aacacgataa agctaaactc aattccgact gatcaattta tttctaccgc      7320
     tgatgatttt ataaaagcaa cacatttaac tgcggcttgt agacagagaa ttttagaagc      7380
     cgttagtagc tttaggtcgt ccgaaacaca gggattgtgc atgtcccttc ttctaaaaac      7440
     cactgcgaaa tatatgatta cggtcaatgt agatactggg gatggattag ttaatggggc      7500
     aacaggcatg ttaatgcaaa tagatttcga tgcatccagc actcccatta ttttatggat      7560
     gaaattttca gatgataccg taggagtact tgctcgctca aagtgtacac atcgtacaga      7620
     acctttctgg accccaattc agaaaatagt taaaagtttt caatatagaa gaaatgagca      7680
     agtttctatt gaccgcagac agtttccagt tgtacctgca gaaggtataa ctattcacaa      7740
     aagtcaggga gctacgtata gcaaagtggt ggttcacact tgctctcgta tgcagcgtgc      7800
     tgcaatatac gtagcttgta gtagagcaac aactgcttcc gggttgttta taataggaga      7860
     ttttgttcct cctaagcctc cgaaaaatga cgataaggtc caaaatgaga tagagaaatt      7920
     gcggactgga aaactacttc gaacacatta tgatcactta gttaacagtt ccgccctaga      7980
     cattttcttt cataatactg aaagcattca ctgtcatatt gaagatattc gatcagataa      8040
     gcttatgctt cagtcgtctg ttctatgttt cgttgaggcc tcaacatatt caaatgaaaa      8100
     tattgaaatt ccagggttta ctgttgttgt ccgtcttgat tgcgaggtaa taccgaatgc      8160
     accgcgacct aagaggggaa tcgtcattta tattaaaaat gcaattttaa acaatatatc      8220
     taattgcttt agcggtaggc aaatttctgg gtcattcgtt tttgagcatg caatatttcg      8280
     ttataagtct gtatgttttt tagttattta caaaagtccg tcatatccgc ttggtttgtt      8340
     taaaacagaa tttgaggttt tatttcagca atatttattt ctaagggagc gttgcattgt      8400
     tttaggagac tttaatttat gcttgagcaa atttgataga tgtagggctc tttacgatga      8460
     attgctcaga aagggattaa ggtgcctatt agatttaaaa acgcccacta ccaattgtga      8520
     ctctcacatt gattgggctt tttcaaatct ctccagtgag gaagttagcg ctaggacact      8580
     cgagacagtg tatagttacc acagtggtat ctctctaacg gttcaggata gggtaaatta      8640
     agtttctata tatatgtcta tataattaca atatgtttaa tttaaactta agaatttttt      8700
     tatgaatata aataaatata ttacctatat ttatatttaa aagttgtttt gtggtcttgt      8760
     acttgggttc agggtatttt ctagtcgggc acccccgact agagcactct tacttg          8816
//
ID   Helitron-1_DYak repbase;    DNA;    INV; 9848 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   19-JAN-2022 (Rel. 27.01, Last updated, Version 3)
XX
DE   Autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; Helitron-1_DYak; DNAREP1_DYak; helentron.
XX
NM   Helitron-1_DYak.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-9848
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 128-128 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of autonomous Helitron
CC   transposons transposed in the Drosophila virilis genome a few
CC   million years ago (copies are less than 5% divergent from the
CC   consensus sequence). The Helitron-1_DYak consensus sequence
CC   encodes the 2186-aa Hel-1_DYakp protein composed of the REP, HEL,
CC   and apurinic endonuclease domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           2551..9111
FT                 /product="Hel1_DYakp"
FT                 /note="HUH nuclease, DEAD-like helicase, and
FT                 apurinic-like endonuclease."
FT                 /translation="MPRLNRPTASQRARTQMLRNRINRENEGYAEVERVAN
FT                 TVSQRRRREDSLVRNAEQGVNTVSRRSRRLNRPVRAIEQESNSQFRSQRRL
FT                 DPAIRAVEQAADTRRRSARRQNSENRAVEQVQNTAGHRERRLDPALRAVEQ
FT                 AADTRRRSERRQNSENRAVEQVQNTAGHRERRLDPALRAIEQAADTRRRSA
FT                 RRQNSENRAVEQVQNTADHRERRLDPALRAVEQAADTRRRSIRRQNSENRA
FT                 VEQVQNTAGHRERRLDPALRAVEQAADTRRRSVRRQNSENRAVEQVQNTAG
FT                 HRERRLDPALRAIEQAADTRRRSERRQNSEIRAMEQEQNTANHRRRRLDTV
FT                 YRAGEQEANTLRRALARDTQERLLERERDRANRARARAGRDRRAVEQARNT
FT                 LARRSARLAARQATIDAIRNISQRVSQYRSLSANREAENLRNALRSQEIRL
FT                 DIAQENRTIRIRPIEIEAHIATFNRNVKLGPDQICFCCKGLWFPKQISKLS
FT                 RSYLEEHCEFREEIYQNARHLAFTGNLFKFCKTCHSNIKAGRKPKGAISNG
FT                 LDFPEIHNSLRGLTPLEERLISPRLPFMIIKSIGHERQSAIKGAVVNVPIP
FT                 VSNIVTSLPRAFNEAEVIQLHLKRRMEYGHDFMAETIRPAKIADAIRYLVN
FT                 TELYRKHNVSVNEQWISDFTSETVPFIASQADVAFVEGQLAIQQEDENSEA
FT                 RNSDQNTEAEELNPGGQETLLENNQTHTVGMTRITIAPGEGQKPLDVILDA
FT                 DSEELAFPSIYAGIKRPSSESYTTIVRSELRNVDRRGCRTDKLFFNYKKLE
FT                 LIKIRNNISTCLRKRSASSAITAANVLNEDFMGNLICHDEGYRILRDIRTS
FT                 PAHWEDEKKKVMAMIRQFGLPTFFITLSAAETRWPELLVLLKRNVDRVNIN
FT                 EEEASNLQFREKARLIRTDPVTCARYFDYRYREVLKLMKKPGGVFGSNFVT
FT                 TYYWRVEFQQRGSPHIHGMFWLKDAPKVDLNNEESIRTVIAFIDQFVTVDV
FT                 TNPDLAPYIEYQKHKHGHSCLKKVRGQSICRFGIPYPPMPQTEILNPLPEA
FT                 TQNSLHHENFKKIRDFLLRNHADDMISHLSIFENFLSHNHVSLSYEDYIYA
FT                 IRSSLKKPQIFLKRTFAEIQVNAYNKHILSMQRANMDIQLILDPFACCSYI
FT                 INYINKSQRGISKLMREAANDIRRGNSSIRQKLQYLGHKFISGTEISAQEA
FT                 VYCCLGMALSEASNKCVHINTFPPEQRVRMLRPTRDLQNMPQNSTDIFLKG
FT                 LLDRYEQRPDFHEGLCLADFSANFEFSKSRRSTRQRANSDDETEEGNDVLG
FT                 DVYFPLRDGSGFIRERNRASIIRYRPFNINTDRINYFRSLVMLFSPWRNEQ
FT                 VDLIQRNCEEFYKENEEAIKANFEKYNAIDSLEDALRRAMEADSIEENEEE
FT                 EVEHNEEFRALAIPEISSQINVLNLNNNLLDVDPDSNIRVIKLPPLISPLN
FT                 LANLVRSLNLEQKTFLTHVLHNARTNRTFYEFVGGGAGVGKSRLISTLFQS
FT                 LSKEYNGRVGCDPTSVKILLCAPTGKAAFGIGGSTLHSMFSLPVNQAGSAF
FT                 RSLSPDLLNTLRSRFIDLKILIIDEISMVGATMFSHLDSRLKQIFSNVETP
FT                 FGGISVIVFGDLRQLRPVCDRWIFQAPSHDPYSAIFGSYLWSPFRFFELTE
FT                 IMRQRDDQPFAIALNNMASGQMTSDDISLLRSRISDESQIPNDSIHLFTSN
FT                 QDTDRYNREKLNSIPTAQFLSEALDSVKSAQISLEQRNRCLEQARSLKTSE
FT                 TQGLCTSLTLKTTAKYMMTVNVDTSDGLVNGATGVLREIGFSTSNTPDLLW
FT                 IQFLDESIGVNARSKRRHCEEASWTPISKIIKSFQINSNQATTIDRKQFPV
FT                 VPAEAITIHKSQGATYSKVVVHTNSSMQRAALYVACSRATTAAGLFIIGPF
FT                 VPPRSAQDSASEAELRELRSTKLLNTHFDCLINSPNLHIFFHNTESLHCHI
FT                 SDVCSDRLMLRSSLLCFVEASTYSNEVYEIPGFTTAVRLDCQSVASGARPK
FT                 RGILVFIRNELFENVSLCSSGRFFSNISNLASPVFEFAIFKYRSLGILVLY
FT                 KSPTYPLKKFETEFKELFQQHTFLNSNCLVLGDFNLCLHSISGCCKQIFDF
FT                 LVDVKGFSSLLDLDSSTTNSNTHIDWAFSNIFDNRATARTFETTYSYHSGI
FT                 LVSVREAE"
XX
SQ   Sequence 9848 BP; 3153 A; 1743 C; 1898 G; 3052 T; 2 other;
     ccattacatt acaagttttt aagaatgtac gatttcaagg agtagcatgt tctatgacgt        60
     cagagacagc cagccgatga cgtaatagat cggtgcagcg actttttggc agacgctaac       120
     aatattcaaa actggaaaaa tgcttcaagc gttattttgt gcacaaataa aatattcgta       180
     ttattaaata caccctttga aatattatgg ttctgcctcc acgaaataag cccaatctgt       240
     ttaaatatta tcttattata taattttgat cggagcaatg ctttatctga gtagctgata       300
     tatgatgata aataaatgaa atcatatgtt gttttgcttt tctttcccac ttctcaataa       360
     ttcaatatat attgatctag tgttgaaaag aattttagtg ttaaatctcg ctcttagctt       420
     ctctctctta gggcgctttt ccacgttttt tacaagtgcg tggcaggtga atgttagaga       480
     gagagggacg tctctgttga cactttgaaa ggagtagcat gttctatgac gtcagagaca       540
     gccagccgat gacgtaatag atcggtgcag cgactttttg gcagacgcta acaatattca       600
     aaactgcaaa aatgcttcaa gcgttatttg tgcacaaata aaatattcgt attattaaat       660
     acaccctttg aaatattatt gttctgcctc cacgaaataa gcccaatatc aatatctgtt       720
     ttaatattat cttattatat aattttgatc ggagcaatgc tttatctgag tagctgatga       780
     tatatgataa taaataaatg aaatcatatg ttgttttgct tttctttccc acttctcaat       840
     aattcaatat atattgatct agtgttgaaa agaattttag tgttaaatct cgctcttagc       900
     ttctctctct tagggcgctt ttccacgttt tttacaagtg cgtggcaggt gaatgttaga       960
     gagagaggga cgtctctgtt gacactttga aaatagaaat cgatgcgcac tctttataaa      1020
     gagagaaact cggtttttga acaaacataa tattatcaat atgtgccatt tttcctttct      1080
     gaccttttat ttatcttctt ttactatagt aaaatatatg tctaaactat tttcttttgg      1140
     taagataaaa gtaaaattct agaagcttga agtttgtttt tcttatgagc tggcaggcgc      1200
     tacaatcatt aagcctttaa tcatatgtta tggttatttg gcttttctca ggtactcttc      1260
     aataattcaa tatatattga tctagtgttg aatagaatgt aattttaata agagcattgc      1320
     tcttagaaaa tgttaaatct aaatggaaga actcgctctt agcttacggt gctttcccgc      1380
     gcttttcttg aaaaagtaaa tagtaaaaga aaagaaagaa gaagggagtc agtcgaagac      1440
     taaattttgg tattacaaca tctttttaga gccgagtgcg atttttaatt gatttttcca      1500
     gttcttaacg tttttttgcc aaccaataag tgttaagctc aatttttaac gtaaagatta      1560
     cattttttaa taaaaagttg catacattaa cgtaaaatta aatttttaaa ttacaacgcg      1620
     gtcgtgagtg ctgttgctgc ttcgattgac gtcgctgccg tttggcccgc tgctgtctcg      1680
     tcgctgcgct cattgctaag tatcaaattt gtagttgatt tttctttatc ctaatatcgc      1740
     ccacgctttt ctacctatat taatataaga actgagcctt tttaaaggct tattcttata      1800
     tttttatcca tatacgtatt ccgcgtatat aaacttaata gtactaaaag tttaagtctt      1860
     tttaaagact tgcacttata atactattaa tactatacta tattattata ctatataatt      1920
     atactatatt caaataataa taatttaagt cttaagtctt tttaaagact tcttaactta      1980
     ttattatttt ttttcacatt taatcttaat atattctata aattttccca ttaatagcat      2040
     ttttaaaggc ttactcttat atttttatyc atatacgtac ttagcgtata taatcttaat      2100
     agtactaaaa gtttaagtct ttttaaagac ttgtacttat aatactattg atactattat      2160
     atttcttcaa ataataataa tttaagctta agtcttttta tagacttttt cttaactaat      2220
     tattatttct cttttttcac atttaattaa tataaatata agaattatac tttttaaaaa      2280
     aataattttt atatatacat attttacata tttatacgta tttgtttaat agtgctgcaa      2340
     gcgttagtct ttgtaaagac tatcttctaa tactattaat ttaattatat tgatatttaa      2400
     aataataata taagcttgag tctttttaaa tacttattct tataatatta tttttctatt      2460
     aagtattttt tcctgtgttc aataaataat aatttttaaa tattatatat ttataaatat      2520
     tttattaagt agtgtacatc atttttagaa atgcctcgtc taaatagacc cactgcttct      2580
     caacgtgcaa gaacgcaaat gttgagaaat aggataaata gggaaaatga aggatatgca      2640
     gaggtggaga gagtggcaaa tacagtatct cagcgtaggc gtagggaaga ctcgttagtc      2700
     aggaatgcag aacagggcgt caatacagtg tcgcgaaggt cgagacgctt gaatcgtcct      2760
     gttcgtgcga ttgagcaaga atctaactct cagtttcgtt ctcaaaggcg tctagatcct      2820
     gcaattcgcg cagttgagca agcagccgat actcgacgtc gttctgcaag gcgacaaaat      2880
     agcgagaatc gagctgtgga gcaggttcaa aatactgctg gccataggga aaggcgcttg      2940
     gatcctgctc ttcgcgcagt tgagcaagca gccgatactc gacgtcgttc tgaaaggcga      3000
     caaaatagcg agaatcgagc tgtggagcag gttcaaaata ctgctggcca tagggaaagg      3060
     cgcttggatc ctgctcttcg cgcaattgag caagcagccg atactcgacg tcgttctgca      3120
     aggcgacaaa atagcgagaa tcgagctgtg gagcaggttc aaaatactgc tgaccatagg      3180
     gaaaggcgct tggatcctgc tcttcgcgca gttgagcaag cagccgatac tcggcgtcgt      3240
     tctataaggc gacaaaatag cgagaatcga gctgtggagc aggttcaaaa tactgctggc      3300
     catagggaaa ggcgcttgga tcctgctctt cgcgcagttg agcaagcagc cgatactcga      3360
     cgtcgttctg taaggcgaca aaatagcgag aatcgagctg tggagcaggt tcaaaatact      3420
     gctggccata gggaaaggcg cttggatcct gctcttcgcg caattgagca agcagccgat      3480
     actcgacgtc gttctgaaag gcgacaaaat agcgagattc gggctatgga gcaggaacaa      3540
     aacactgcca accatagaag aaggcgcttg gataccgtgt atcgcgcggg tgagcaagaa      3600
     gcaaataccc tgcgtcgagc actggcaaga gatacacagg aacgcttatt agaaagagag      3660
     cgtgataggg ctaacagagc tagggctagg gccggtaggg atcgcagggc agtcgagcag      3720
     gcgagaaata cacttgctcg acgaagcgca cgattagctg ctcgacaagc aacgatcgat      3780
     gcaattagaa atataagtca aagagttagt cagtatagaa gccttagtgc taatagggaa      3840
     gcagaaaatc ttcggaatgc acttcgaagt caggagatta gacttgatat agctcaggaa      3900
     aataggacta ttagaatcag acctattgaa atagaagctc acatagctac attcaatagg      3960
     aatgttaagc ttggcccaga tcagatttgc ttttgttgca aaggattgtg gttccccaag      4020
     caaataagta agctttctag gtcttatttg gaagaacatt gcgagttcag ggaagagata      4080
     taccaaaatg caagacatct tgctttcact ggtaatcttt tcaagttttg caaaacttgt      4140
     cacagcaaca ttaaagccgg ccgaaagccc aaaggggcca tttcaaatgg cttagatttc      4200
     ccagaaattc ataactcttt gaggggccta actcccttgg aagaacgact gatttcacct      4260
     cgccttccat ttatgattat taagtcaata ggtcatgagc gtcaaagtgc tattaaagga      4320
     gcagttgtta atgtccctat tccagtaagc aatatcgtga cgtctcttcc acgagctttc      4380
     aatgaggctg aggtaattca gctccacctc aaacgaagaa tggaatacgg acatgatttc      4440
     atggcagaaa ccatacggcc tgccaaaatt gctgacgcta ttaggtattt agttaatact      4500
     gagctttata gaaagcacaa tgtgtcagtt aacgagcagt ggatctctga cttcacatcc      4560
     gaaactgttc cattcatagc atctcaagct gatgtagcct ttgtagaggg acaactagcc      4620
     atccagcagg aggatgaaaa ttcggaggcg cgtaattctg atcagaatac agaagccgaa      4680
     gaactaaatc ctggaggaca agaaactttg cttgagaata accagacaca tactgtagga      4740
     atgacgagaa ttacaatagc tccaggtgag ggccaaaagc ctctcgacgt aattctcgat      4800
     gctgattctg aagaactggc attccctagc atatatgctg gcataaaaag accatcttca      4860
     gaaagctaca caaccatagt tagatctgaa cttaggaatg tagatagacg aggttgtcga      4920
     actgataagt tattcttcaa ttataagaag ttggaattaa taaaaattcg aaataatatt      4980
     tcaacttgct tacgtaagcg gagtgcctcc agtgccatta cagctgctaa cgtcctaaat      5040
     gaagatttta tgggcaacct catttgtcat gatgagggat ataggatcct tagggatatt      5100
     cgcacgtctc ctgctcactg ggaagatgag aagaaaaagg tcatggccat gattcgccaa      5160
     tttgggctgc caactttttt cataacttta tcggccgctg aaactaggtg gccagagctg      5220
     ttagtactgc tcaagcgcaa tgtagatagg gttaatataa atgaagaaga agcttcaaat      5280
     ttgcagttta gggaaaaggc gcgccttata agaacagacc cagtgacgtg cgctagatat      5340
     tttgattaca gatatagaga agttttaaaa cttatgaaaa agcctggggg tgtctttgga      5400
     agtaatttcg ttactaccta ttactggcga gttgagtttc aacagagagg ttcgcctcat      5460
     attcacggca tgttttggct gaaagatgcc ccaaaagtgg atttaaacaa tgaagagtct      5520
     atacgtactg taatagcctt cattgatcag tttgtaactg tggatgttac aaacccagat      5580
     ttggctccgt atattgaata ccaaaagcat aagcacgggc attcgtgtct taaaaaagtg      5640
     cggggacaat ctatttgtcg tttcggtatt ccataccctc caatgcccca gacggaaatt      5700
     ttaaatccac ttcccgaagc aactcaaaat tctcttcatc acgaaaactt caaaaaaatt      5760
     cgagattttc tacttcgcaa tcatgcagat gacatgatta gccatttaag catatttgaa      5820
     aattttcttt ctcacaacca tgtgagcctc agttacgagg actacattta tgctattagg      5880
     tctagtttga aaaaaccaca gatttttctg aagagaacat ttgcagaaat tcaagtaaat      5940
     gcttataata aacacattct ttctatgcaa agggcaaata tggatatcca gttaattttg      6000
     gacccttttg cttgctgtag ctacattatt aattatatta acaaatccca acggggtatt      6060
     tcgaagttaa tgcgagaagc agctaatgac attagaagag gcaattcaag cattcgacaa      6120
     aagctacagt atctcggtca caagtttatt tcaggcactg agatatctgc tcaggaagcc      6180
     gtgtattgtt gtctgggaat ggcgttgtcc gaagcaagta ataagtgcgt tcatatcaac      6240
     accttccctc cagaacaacg agttcgtatg cttagaccta cacgcgacct tcaaaatatg      6300
     cctcagaatt caactgacat atttctgaaa ggattgctgg atagatacga acaaagacca      6360
     gatttccatg aaggcctgtg tttagccgat ttttcagcaa attttgagtt ttcgaaaagc      6420
     cgtagaagta ctcgtcagag ggcaaatagt gacgatgaaa ctgaagaagg caatgacgtg      6480
     ttaggagatg tatattttcc gctccgagat ggaagcggtt ttattaggga aagaaatagg      6540
     gctagtatta ttaggtatag gccatttaat attaatacag ataggattaa ctattttaga      6600
     tcattagtta tgctcttttc tccgtggcga aacgaacagg tagatttaat tcaaagaaat      6660
     tgcgaggaat tttataagga gaatgaggag gctattaaag ccaactttga aaagtataat      6720
     gccatagata gtttggaaga cgcgcttaga agggccatgg aagcagatag tatagaagaa      6780
     aatgaagaag aggaggtcga acataatgag gagtttaggg cattagctat tcctgaaata      6840
     tcttctcaaa ttaatgtttt aaacttaaac aacaatttgt tagatgttga tccggatagc      6900
     aatatccggg taataaagct tccgccactt atatcccctt taaacttagc caatttagtt      6960
     agatctctaa atttggagca aaaaactttc cttactcatg tcttgcataa tgcaaggaca      7020
     aatcgaacct tttatgagtt cgtaggtggc ggagcaggtg tcggcaaaag tagattaata      7080
     tcaacgttat ttcagtccct atccaaggag tataatggta gagtaggatg cgacccaact      7140
     tcggtaaaaa ttttactgtg tgctcccaca ggcaaagctg ctttcggaat cggaggatcc      7200
     actcttcatt ccatgttctc tctccctgta aatcaggctg ggtccgcatt tagaagttta      7260
     agtcctgatt tgttgaatac ccttcgttca agatttattg atcttaaaat tcttataata      7320
     gacgaaattt ctatggtcgg tgcaacaatg ttttctcatt tagactctcg cctaaagcaa      7380
     atattttcta atgttgaaac tcctttcgga ggtatttcgg ttatcgtgtt cggcgatctt      7440
     agacagttgc ggcccgtatg tgatcgctgg atttttcagg ccccgtcgca tgatccatac      7500
     agtgctatat ttggatcgta tctgtggagt ccttttaggt tttttgaact cacagagata      7560
     atgcgacagc gagatgacca accgtttgca attgcactta ataacatggc atccggccaa      7620
     atgacgtctg atgatattag cttgcttaga tctagaattt ccgatgaaag tcaaattcca      7680
     aatgactcaa ttcacctttt tacaagtaat caggacacag atcggtacaa tagggagaag      7740
     cttaactcga tacccactgc tcaatttctc tcggaagctt tagactcagt taagtccgct      7800
     caaataagct tagagcagag gaacagatgt ctggaacaag ctaggtccct aaaaacatct      7860
     gagacacaag gattgtgtac ctcgctcact ttaaaaacca ctgccaaata tatgatgacg      7920
     gtcaatgtag atacatcaga tggtctcgta aacggagcca ctggtgtcct tagagagata      7980
     ggcttcagta cgtccaacac tccagatctt ctttggatac aatttttaga tgaaagcata      8040
     ggagtaaatg cgcgttccaa gcgcagacat tgtgaggagg cttcatggac gccgatttcg      8100
     aaaattataa aaagttttca aattaattct aatcaggcaa ctacaattga ccgaaagcag      8160
     tttccagtgg ttcctgcaga agcaataact attcataaaa gtcaaggcgc tacgtacagt      8220
     aaagtggtag ttcacactaa ctccagcatg cagagagctg cgctgtatgt agcctgtagt      8280
     agagccacaa ctgcggcagg tcttttcatt attggacctt ttgtcccccc aagatccgct      8340
     caggattcag cttcagaagc agagctccga gaattgcgtt ccactaagct actgaatacc      8400
     catttcgatt gtttaatcaa tagtccgaac cttcatattt ttttccataa tacggaaagt      8460
     ttacactgcc acattagcga tgtttgttcc gatcgtctaa tgcttaggtc ttctcttttg      8520
     tgcttcgttg aagcatcaac atactcaaat gaagtatacg aaattcctgg ctttaccaca      8580
     gcagtgagat tagattgcca gtcagtagct agcggagccc gaccaaaaag aggcattctc      8640
     gtttttattc gaaacgaact atttgagaat gttagtcttt gctcaagtgg tcgatttttt      8700
     tcaaatattt caaatttagc ctctccagtg tttgagtttg ctatctttaa gtaccgatct      8760
     ttagggattc ttgttttata taaaagtccg acctatccct taaagaagtt tgaaactgaa      8820
     tttaaggagt tatttcagca acacacattt ttaaatagta attgtttagt gttaggagat      8880
     tttaacttgt gcctccactc catctctggc tgctgcaagc aaattttcga ttttttagta      8940
     gatgtaaagg gttttagttc gttgctagat ttggattcgt ctacaaccaa tagcaatacg      9000
     catattgatt gggcgttttc aaatattttc gataatcggg ccactgcgcg cacatttgag      9060
     accacatata gttaccacag tggtatatta gttagcgtta gggaggcaga gtaggtattg      9120
     tatagttatt taattaaata taaactaaat aagtatatat ttttgaattt ttttaattat      9180
     ttattattaa atwaaaaaaa aaacaaaaac aaaaaaaaac aaaaaaataa aaaaaaataa      9240
     ttaatattat taaataaatc tgataattta atttaattta caaaaaataa caagaaaaac      9300
     ccaaaaaaaa tataattgaa ttttttaatt attaaatgta tttattatta aattaaaaaa      9360
     caaaaaaacc caataaaata aataaaaaca aaaaaaacct aaaaaaataa ttaatatttt      9420
     taaataagtc tgataattta atttaattta aaacaaaaac aagtgagaac ccacaaaaaa      9480
     aattaagtaa aaacctaaaa aaataagtca tatttttaaa taagtttgat aatttaattt      9540
     aatttaattt aataattcat tttttaatta tttaatttaa tactaacaat atctatgcct      9600
     ccgtatgcta cgggtaaaca aaatttttgg ggaacatgga gttttaaaaa tttttcaaag      9660
     tttgaaaact caagtcgact cgtaggtccc caaaattgat tttggtttaa acgaccccgt      9720
     tgtaactcaa cggcctccac gtggtgttcc ctgggtaccg atttcaaaat tttaatcgga      9780
     agctaattcg agcggcgaaa agttacgtac atatatgaag gcatatttat tgttttttaa      9840
     atttagct                                                               9848
//
ID   Helitron-1_FoCa repbase;    DNA;    INV; 10760 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-10760
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2487-2487 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. The 5' terminus is uncertain. The
CC   3' junction is CTTG|T.
XX
FH   Key           Location/Qualifiers
FT   CDS           2344..7314
FT                 /product="Helitron-1_FoCa_1p"
FT                 /note="DUF5401, Y2-transposase, and helicase."
FT                 /translation="MVRKKQRLNCRDEFESASDSETKNSMMHRRRPGETES
FT                 QASLRRDANARRTADSRLAETEEERSARCLANARRNTESRLAETEEERSER
FT                 CLANARRNNESRLAETEEERSERCLANARRNNETRLAETEEERSARCLANA
FT                 RRNNESRLAETEEERSARCLANARRNNESRLAETEEKRSARCLANARRNNE
FT                 SRLAETEEERSARCLANAQRTSVVRLTETDEEAMKRKIQDNQRISSRRQLE
FT                 TPKERDERLEQLRTNRANASCRVLKMTARAAIIDNLEESIVELHNMGEMNV
FT                 LCEFCNAKHFARERPTDKKFTVCCNKGKVKIQNFATYEYIKRLLTGKDPDS
FT                 KHFMEHIRSYNNAFAFASVGAQIKAPPGYGPYCYRIHGQIYHRAGTLHPEE
FT                 GEPRKYAQLYILDPDEATSQRLNEPSNVACKNHVMSNLLDIMKDNPFARAF
FT                 KMLHEFEKEEKIKEQSQGHLAKEVTMAIVNDRALDNRRYNMQTCNEVAIIF
FT                 SNTDGEPPLERDLLIHLRPTGENSPTTKRISILNKNLDALTYPLLYPYGEQ
FT                 GWGEDLALCVRSHSTNVNTNSRKRVTLKMYYSYIFSVRETFSPFLSAGKLT
FT                 QQYFVDAYVKAEANDLNFVRQNQSKLRAGSYDALVDYMDSVAEQDGIVPGK
FT                 PIILPSTFQGSRRNMNQNYQDAMSIVRKFGKPDLFITMTCNPKWFEITANL
FT                 EDGQKPENRPDLVARVFNVKLRSMLEDLTKKCVLGHVLAKVHVIEFQKRGL
FT                 PHAHILIILKDIDKPRTVDLIDKIVCAEIPNNETHPRLFDVVTKNMIHGPC
FT                 DKINSKSPCLVAGKCSKGFPKPFQHETLANVNGFPFYRRRNLEPVVTNKNI
FT                 KIDNRWVVPYNPYLSLKYNCHINVEICASIRSVKYLFKYAYKGHDCAKVEL
FT                 RIDEIKTHVDSRYVSPPEAAWRIFRFPMQDRTHSISRLKVELPGKKRVSFD
FT                 PNKIQEAIHKAENTDSTLTAFFELNTQDPKARQYKYAEIPEYYVFNAKNKW
FT                 VRRKDGHTDKVIGRLYSVSMSDGERYFLRLLLLHVAGPTSYDDLLKYQGHA
FT                 YDSFYEVAKARGLICDQTVWNDTLNDAAYASMPRQLRELFAYICVFGETSD
FT                 MTGLWNEHKENLTEDFVRVHGHPSDEECDMCESYALRDISETLITHGRKCS
FT                 DYKLKDPPSHLPLNLNDFVDIELERGVAEDLKSTLTEEQLSAFEAIEYSIN
FT                 SAEPVEKCFFLDGPGGSGKTYLYKTLLSYVRGQGDIALPVASTGIAANLLK
FT                 GGRTYHSQYKLPLNLNETSVSSIEMTTNDATLIRTAKLLIWDESTMASVHA
FT                 LHCIDRLLKEIMRNDLPFGGKVLLLGGDFRQTLPIIPHGDAVSIVQASIKF
FT                 SHLWRKFQILKLNNNVRSLDKEYSDWLIKLGNGELTNVDGLQDSLIEIPEA
FT                 MLATENIIKDIFGESLTPEKVEQFSKMAILCPTNADVDEINEQVLKILQGE
FT                 CKTYLSTDSIMTDEDSDRDDYPTEFLNTLNPSGSASHELKLKVGSLIMLLR
FT                 NLNTKRGLCNGTRLVVVELKPNLIIAKVLTGSAEGNIVFIPRIDLIADSDL
FT                 PFQLRRLQFPVKLAFAMTINKSQGQTLDKVGIYLATPVFSHGQLYVAFSRV
FT                 RRSSDVRVYVRDMTEQGKLLENSNKVFTRNVVFKDVLQK"
XX
SQ   Sequence 10760 BP; 3608 A; 1861 C; 2165 G; 3126 T; 0 other;
     tttaaatgtt gtctatgtat ttcgctggcc gggattcgtt ggccgaccac acatgctaag        60
     gtttgaaatt gccgcttcgt gtgagtagtc tcatagcccc ggctcttaaa tttaacattt       120
     ctgtctatgt gtgactattt taatataaga tgagcaatgt gtttggcttg atgaaataaa       180
     aataagtttt aatgctatta atatttacaa aagtaatgct aaggcaaatt taattttgtt       240
     tttatatatt tttaatggaa tgttttattc atttaaatta tttcataaat acatgtgtaa       300
     attttaagta ggaagcatga aagtaagtaa gaaacattga aacaaataaa acaaaaaaca       360
     gttcttgaaa tttaaaaaat catcaaacta attacaaata agagggagac ttaaaaagct       420
     tcattaaaat tttatgattt tgcacattta ccacattatt ccttcatttc ttcatcatcc       480
     tgtagaagag attcctctaa cttcttcgcg gcagctacct gttcggcatc agcgttagcc       540
     tcctcctcct caattttctt cttttcttct tctaatattc gtttccgctc ctcctccttc       600
     ttcacttctt tccataacaa gaaatcagga tcatgcgttt gctgcttcaa ggcgtcattc       660
     tcttctttca gtcgcttggc ttcaagctgc tgtttctgaa tttgaatttg ttcaaagcgg       720
     cgttttcggg aaagggcgtc tcgattagcc gtaccgcagg attgacagta tgggaagtcg       780
     gctgtaataa taaataataa aatacatata gatgtgatga cccaaaatta actatcgaag       840
     aatctatatt tcgacgttca attaaaaggt tttttgacag gtggatttct aactctaaat       900
     gtttagtaac acagttatac ataccgtgag taaagctgtc acactgtcgg cagcgtcccc       960
     acttgctagc ggaatcaaat tgatttgctc ggaagattag aggctgcttg caatttttgt      1020
     gtgggcacac agctataaaa aaacaaagta aaatttgtat ttgtagagac gatataaatt      1080
     attagactaa ctttattaaa tagtagtaca tcgtatacgc tggactatca aaaactaata      1140
     aagcataaat attagatttt caatgaaata taattaccag gtttgtccat cgcctgaccc      1200
     cggataacaa atccgcactg aacgcaaaat cgatcatttg gtgctttcaa gagccgtgta      1260
     gaggccacat cccaaccagc ggccacagcg ttgggagaaa attcagaagc gactctataa      1320
     gccatatgaa agtaaatcaa gaattgaata cagttcgcaa aatgtagaaa ttaattttca      1380
     agggaactgc aaaaattgtg gcaaccgagc tgacagttgg cgatcgactg atgagcatta      1440
     aactgctgtc agacgtttta ttgtctcagc tcgacgttga cagaacgttt ctattgccag      1500
     acggtgccaa cttaccattg aaagatagga ttcaagactt ttcgaatctt ccaatgctaa      1560
     ttatacattg caggataggg ccaatagtga aagcattaaa aaattaaaat tttatgattg      1620
     gctctcagtt atacgttagc tgaacgttgt gaaagcttgc tgaaatttgc atccctttac      1680
     caatttgtgt cggcagggtg gaaacgtttg tttacgttac cccctctcct gcaaggcata      1740
     attataggac ctgctaacag tcaacaaaaa cgttttgtca acgttaagct gaattaatca      1800
     aacggtagca acaattttag tggtcatcac tttgctgtgc aatgtcgtca gactgggttg      1860
     ccgaaattat tttgagcttt ccttggaaat ctgtttttca ttgaattttt gtgtgcagga      1920
     aactacaaaa aacagaaaat taactaaatt taaatttaac taaataaaag agttttccaa      1980
     ttgattgttc agaaaatcat tttaggtagg taatttgact gatgatttgt ttgaattttg      2040
     tttggaaatg gttgcagcca ctaattaaaa aattcgctat ttgcaagaat ttctatataa      2100
     actatatttt taccaattaa tttgattaat tttttcttag gcaagcaacc cgtaaattct      2160
     cgcattattt gcatttgcac gggaaacagt cctaagtcga cttattttca gccctaagtt      2220
     ggcattttcg attcattata cataattttg agtgatctat ctgtagacac atactgagcc      2280
     ctaagtggca accacttgag ctattcgtag caattttgag ccctaagttg gcagttattc      2340
     agaatggtac gcaagaagca acggttaaac tgcagagatg aatttgaatc agcatctgat      2400
     tcggaaacta aaaattctat gatgcatcga cgacgaccag gagaaactga gtcgcaagca      2460
     tcacttcgga gagacgctaa tgccagacga acagctgaca gcagattagc agagacagaa      2520
     gaggaaaggt cagcacgttg cctagcaaat gctcgacgaa acactgagag taggttggct      2580
     gagaccgaag aggaaaggtc agaacgttgc ctagcgaatg ctcgacgtaa caatgaaagt      2640
     aggttagctg agaccgaaga ggaaaggtca gaacgttgcc tagcgaatgc tcgacgaaac      2700
     aatgaaacta ggttagctga gaccgaagag gaaaggtcag cacgttgcct agcaaatgct      2760
     cgacgaaaca atgagagtag gttggctgag accgaagagg aaaggtcagc acgttgccta      2820
     gcgaatgctc gacgaaacaa tgaaagtagg ttagctgaga ccgaagagaa aaggtcagca      2880
     cgttgcctag cgaatgctcg acgaaacaat gaaagtaggt tagctgagac cgaagaggaa      2940
     aggtcagcac gttgcctagc gaatgctcag agaacttcag tagtgagatt gacagagact      3000
     gacgaagagg caatgaaacg aaaaattcag gacaatcaac gaatttcatc aagacgccaa      3060
     cttgaaacac ccaaagagag agatgagaga ttagagcaat tgcgcacaaa tcgagccaat      3120
     gcttcatgtc gcgtgctaaa aatgacagca agagcagcca taattgataa tttagaagaa      3180
     agcattgtgg aattacacaa tatgggggag atgaatgttc tttgtgaatt ttgcaatgcc      3240
     aagcattttg ctagagaaag accaaccgat aaaaagttta cagtttgctg caacaaagga      3300
     aaggtcaaaa tccaaaattt tgcaacatat gagtacataa aacgactttt aacagggaag      3360
     gacccagatt ctaaacattt catggaacat ataaggtcct acaataatgc attcgcattt      3420
     gcatcagttg gagcacaaat taaagctcca cctgggtatg gcccgtactg ttacagaatc      3480
     catggtcaga tctatcacag ggcagggacc ttgcatccag aagaaggcga accacgaaag      3540
     tacgcgcaat tgtatatact tgacccagat gaggcaacca gtcaaagact gaacgaacct      3600
     tctaatgttg cctgcaaaaa tcatgtgatg tcgaacctgc ttgatattat gaaagataat      3660
     ccgtttgcaa gagcattcaa aatgcttcat gaattcgaga aggaggagaa aatcaaagaa      3720
     caaagccaag gacatttagc caaagaagtt acaatggcga ttgttaacga ccgagctctt      3780
     gacaaccgtc gatataacat gcagacatgt aatgaggttg cgataatctt cagcaatacc      3840
     gatggcgagc ctccactaga aagagattta ctaattcatt taagaccaac cggcgaaaat      3900
     tctcctacaa caaaacgaat tagtattcta aacaaaaatc ttgatgccct gacctatccc      3960
     ctcctctatc catatggaga acaaggctgg ggagaagact tggcgttatg cgtacgttct      4020
     cactcgacaa atgttaacac aaactcgaga aaaagagtaa cactaaaaat gtactactct      4080
     tacatatttt cggttcgtga gacatttagt ccgtttttga gtgccggaaa acttactcag      4140
     caatactttg tcgatgcgta tgtgaaagct gaagcaaacg accttaattt cgttcggcaa      4200
     aatcaaagca agcttagagc aggtagctat gacgcattgg tggactatat ggactccgtt      4260
     gcagaacagg atggaatagt tcctggaaaa ccaataattt taccttcgac ttttcagggt      4320
     agcagaagaa atatgaatca aaattatcaa gatgctatgt ccattgtaag aaaatttgga      4380
     aaaccagatt tattcatcac aatgacatgc aaccccaaat ggtttgaaat tactgcgaac      4440
     ttggaagatg gccaaaagcc tgaaaataga cccgatttgg tagcacgggt attcaatgtt      4500
     aaattaagat cgatgctgga ggatttgaca aaaaaatgtg tcctaggaca cgtacttgca      4560
     aaagtacatg tcattgaatt tcaaaaaaga ggtctccctc atgctcatat tcttataatt      4620
     ctaaaagata ttgataagcc aaggacagtt gaccttatcg ataagatcgt gtgtgccgaa      4680
     atacctaata acgaaacaca tccaaggcta tttgatgtcg ttacgaaaaa tatgatccac      4740
     ggcccgtgtg ataaaattaa ttcaaaatca ccatgcttgg tggccgggaa atgttcgaaa      4800
     ggttttccaa aaccatttca acatgaaact ttggctaacg ttaacggatt tccgttttac      4860
     cggcgacgca atttagaacc agttgtgact aataaaaata ttaaaattga caatagatgg      4920
     gttgttccat ataacccata cttaagttta aaatacaatt gtcatatcaa tgttgaaatt      4980
     tgcgcatcga ttagaagcgt taaatattta tttaaatacg cttataaggg acacgattgc      5040
     gcaaaagttg agttacgaat agatgagatt aagacacatg ttgattcaag atatgtcagt      5100
     cctcctgagg cagcttggag aattttcaga ttccctatgc aagatagaac tcattccata      5160
     tcaagattaa aggttgagtt accaggcaag aaacgagtgt cattcgatcc taataaaatt      5220
     caagaagcaa ttcataaagc agaaaataca gactctacat taacggcatt cttcgagtta      5280
     aatacccaag atccaaaagc caggcaatac aagtatgcgg aaattccaga gtattacgta      5340
     tttaatgcaa agaataaatg ggttcgtcgt aaagatggac acactgacaa agttatcgga      5400
     cgtctgtatt ctgtgagtat gagcgatggc gagagatatt tcttgaggtt attgctactt      5460
     catgtagcag gaccaacaag ttatgacgac cttctaaaat atcaaggaca tgcttacgat      5520
     tcattttatg aagttgctaa ggcgagaggt ttgatttgcg atcaaacagt gtggaatgat      5580
     acattaaatg atgctgctta tgcatcaatg ccacgtcagc tgcgagaact ttttgcatat      5640
     atttgtgtat ttggagagac ctccgacatg acaggcctat ggaatgaaca taaagaaaat      5700
     cttaccgagg attttgtaag agttcatggc catccatctg acgaagagtg tgatatgtgt      5760
     gagtcatatg cgctaaggga tatttcagaa acacttatta cacatgggag aaagtgttct      5820
     gattacaaac taaaggaccc tccttcccat ctgcctttga atttaaatga ttttgtagat      5880
     attgagttag agcgtggcgt cgcggaagat cttaaatcaa cattgacaga agaacaactg      5940
     agtgcatttg aggcaataga atactcaata aactctgctg aaccagttga aaaatgtttt      6000
     ttccttgacg gccctggtgg aagtgggaaa acttacttat ataaaacact tttaagctac      6060
     gttagagggc aaggtgatat tgcattgcct gttgcatcaa caggaattgc tgctaatttg      6120
     ttaaagggag gacggaccta ccactcccaa tacaaacttc cattgaattt aaacgagaca      6180
     tcagtttcat cgatagagat gactacgaat gatgcgacgt taattcggac cgctaaactg      6240
     ctaatttggg atgagtcaac gatggcatca gttcatgctt tgcattgcat tgataggctg      6300
     ttgaaagaaa ttatgagaaa tgatcttcca tttggaggaa aggttttact cctcggaggt      6360
     gattttaggc aaacattgcc aataatccca cacggtgatg ctgtatcaat tgtccaggca      6420
     agcataaaat ttagtcacct ttggaggaaa tttcaaattt tgaaattgaa taataatgta      6480
     agatcacttg ataaggaata cagtgattgg ctaattaaac ttggtaacgg tgaattgaca      6540
     aatgtggacg gattacaaga tagtttaata gaaattccag aagcaatgct ggcgacagaa      6600
     aatataatta aagatatttt tggtgagtct ctaactcctg aaaaagtaga gcaattttca      6660
     aaaatggcta ttttatgccc cacgaatgca gacgttgatg aaataaacga gcaagtcttg      6720
     aaaattctgc aaggagaatg caagacatat ttaagtactg actcaattat gacagacgag      6780
     gattctgata gggatgatta cccgaccgaa ttcctgaata ctttaaatcc ttctggatca      6840
     gcatcacatg aactaaaatt gaaagttggt tccctcataa tgctactgag aaatttaaac      6900
     acaaagcgtg ggttgtgcaa tggaacacga ttagttgttg ttgaactaaa gccaaacttg      6960
     attattgcca aggttcttac aggatcagct gagggaaaca tagtctttat ccctagaatt      7020
     gaccttatag cagattctga tcttccattt caactaagaa gactgcaatt ccctgttaag      7080
     ctagcatttg ctatgactat taataagtcc caaggtcaga ctttggacaa ggttggaatt      7140
     tatttggcta ctccagtatt cagtcatgga caactttacg ttgcattttc aagagttaga      7200
     aggtcctcag acgttagagt ttatgtacgt gatatgaccg agcaaggaaa attattagaa      7260
     aattcaaata aggttttcac gaggaatgtt gtcttcaagg atgtacttca gaaataaaat      7320
     gatataatat ttataataaa ttcacaattt aatcgcaacc gggcaatgat tgtaagactg      7380
     agcccgttgc gtaaaaaaca aattctacat gcaaaatgta tttctaaact ttttaaagct      7440
     tggttagtaa tacacgcata agtcgcatat aggattctta gtggaataag gcgtcgttca      7500
     taaattatgt cacgcaaggg atgggggggt gggtctaagg ctccaatgat atcgtgccta      7560
     tgtgacacat gttaaaggat ggggggtggg tcttgaaaat cgcgattttt gcgtgacata      7620
     atttatggat ggcgcctaat aaaaaattat aatgatatcg gtagcactgg aaagtgttta      7680
     ggaaatctcc atgacctata tttattcgtc gctgtaattt taaggttgaa catactatga      7740
     caacatttgg agattattag gttttttaga tggatgaatt tttgttcaaa tttaaaatgt      7800
     tactaatgtg ttttaatttg ttttagaaat tcattaacaa gataactccg atgaaactcc      7860
     atatggcata attccacaat aaagtttcaa aagttgagag cttaatacaa ataaaattag      7920
     caaagacccg aacagcctag cagttgacga caaatgagtt ggctactcat atttcgccac      7980
     cacagaagta ctaatttgct aataagcttg atgaaatgtt caagtttata aaaaattgtt      8040
     cgccagttta catagtttga tagagagttt gataaattga ttggaatatt gatattttat      8100
     tgtacaaaaa atttctataa aaatattaaa taaacatgtg cgtggtacat tgtgcatcca      8160
     ttttatgaac aactggacct aatggggatg gaacttgccc aggttaaaaa ctataaacta      8220
     tactaaattc attaactaaa aaggggtggg attcaatttg tggttcataa aatggatgca      8280
     cattgtttgt ggcctctact gcaaaagggt ataaatcaga agaggagggc ccaccctgtg      8340
     ctcaccaacc atgcatttaa cgggatggac ctttgaaatt attgggggta aaattataga      8400
     ttaaggggga tcgaaaagat taaatgcata gtcggtgagc tacccttttc ccacaaaaat      8460
     tctaacctac ccttaaatac tttgccttaa aattatgact aaaaactact ataataacta      8520
     acgccctact tccacccacg cgcacatact aataattatg attagctatt taaaatattt      8580
     ttgagtcgaa cctaattggg taccaaagga taagaattaa aaattttgaa ttttggaaca      8640
     gtcacgaata gaataagttt aaaaagccaa atagaaatat aattttgaaa gcgagtacat      8700
     ataataattt aaaaatccaa tcgaaataaa attttgaaag ctgataataa ggttaattag      8760
     gaaagggaga gccaagttcg cagctgataa cgatggcagc taatgatttc gtgcttcatg      8820
     tctgacaatt ccctgaacag tcaggaaatg aagatcacat tccacgcaag tatatcgatg      8880
     aggtgggcag ctgggttccg catgaacggg ggacattttc tcgaacggga ttactggagg      8940
     gatttgttct tccatgcgaa ggatgctcaa gtaggtcaag tctaataaat aaattggttt      9000
     caattagtta tactattaaa attacaaact ggacttgacc gcaaagttaa gagaaatatt      9060
     tctttgcacc ttgataaacc gttcccatca gtttctcatc cgtgtacgga tttgtaatct      9120
     ctccaatggt accgtcgaaa tccttttgac gaacaagttg caatgaggct aaaaatataa      9180
     ttagcaaata taattttagt caatataagt aagtaaaata aaagtaaaaa taaaaagtag      9240
     aataaagtaa gtaaataagt aaaattatta atttaggaag atgattactt acaattggcg      9300
     gaatccagcg gcaagaagcc acaaatatcc cgcacacaaa acggacatct aggttgatgg      9360
     gtgggcgaga actgatcccc gctcgctgat gaactcacgt gtttaatcaa acactgcacg      9420
     caataatgat ggccacatgg ttttgttcca tccccagcat tattgttcgc tgcgatggtg      9480
     tacattgcag gcaattcatc gcaaattaag caaagctaag aggatcaaat aaatttattt      9540
     catgttaaag ggtaacaaat tttttaaatt actgagcgta tttgaagtag tatttatttt      9600
     atgtcaaacc gtaaaaaatt ttcaattact taccgtcttt gaagttgtcg acgaacaaga      9660
     tccaattgaa gaagaaggag agttcatttt cgtttaattt tgtaattaaa tgtacaactt      9720
     cctgagcaat tttaatctta aaatcgagag agctctgtac tgctcgggtg ctccgatcca      9780
     agtgggagtg gggaatcgct gacggctctc ttcgtgaggt gtggcatgat atgtaagtta      9840
     gcaagcaaac aggacccatc gtttgtaagg aaatttggga gactgacaat tttgtctgct      9900
     gatccagcaa gcaaacggaa cccattgttt ctaatgaatt tcgggagact gacaattttg      9960
     tctgctgatc caacaagcaa tgtttacaaa catttcgcgc ggtaagcagc tcaccatttt     10020
     gttattggtc ctcaagattc tcagttcctt tttattgtgc gtccaatgct caaccatacg     10080
     gcggtgtctc acatgcttta tgtgataatg tgataattat agtgtagctt aaatatgata     10140
     ttctaattat gcataattat ttgagtgtta ttttaggaaa tatattcgat gctcaagacg     10200
     tatttatgtt ttttgcagaa ttgatgcaga ataattttgg ttgcctttaa tgcaacggaa     10260
     cgccatttta ctttttattt acaaggcgaa gtattaatac agttaatccc agacgtggtc     10320
     cctactacaa atttagatta atgtacttaa attatcttgc accaggtcat gaatattact     10380
     gtgagaaata ttaatgtaga ttttaattaa gtctaaaaat tatttaaaca tctgtctatt     10440
     gaattctggt gaaaatttga cggctggaat attaaagggg caatttgcgg acatgacctt     10500
     aaattacgtg cagttttggg taatgttacc cttcgagtgt tcagtgatca tgtaatttca     10560
     aagaattcgc acccgaacat ggaaaattag aaaggttata ttgtttaagg atattgatac     10620
     gccgagaaac ttgataaatt taaaacacaa aatttaagcg aaactcaaac agttcctatc     10680
     ttgcacatct tcgtaatagg aaccttagct gtacgtctcc attatgcaca cggcccgcag     10740
     aggcgggctt gatagacttg                                                 10760
//
ID   Helitron-1_NVi repbase;    DNA;    INV; 6398 BP.
XX
AC   .
XX
DT   18-FEB-2009 (Rel. 14.02, Created)
DT   18-FEB-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Helitron DNA transposon from Nasonia vitripennis - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6398
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(2), 481-481 (2009).
XX
DR   [1] (Consensus)
XX
CC   The 5'- and 3'- end are incomplete.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..1960,1852..3741,3669..5042,5030..5701,
FT                 5554..6384)
FT                 /product="Helitron-1_NVi_1p"
FT                 /translation="KRKYYQENREXILKKQRLRYHLNKEKRLASVKXYYES
FT                 NKEKILVQRKNKRHEMSLKRSVVKXKXXLAKKIXKKYKSIXIKQSXKKXIQ
FT                 TKEKYIQNVMQKLDCPSVLDRRIEADKLVTSAFYVRDNHISKVKRELXNXK
FT                 EKIEVSLTRLGGEPIDDDNCSYALTALCGLPKHTSSSEGYFGESTYDFTNG
FT                 QINDKLETHIILNEQGQTMNILPTIESNTKSKIWQCNDYCKKVDPDVLNEL
FT                 NNLFQDLIDVTYINAYNFLKKIDNCSAQSHNSEKQGHPIICYSKPLLCTSK
FT                 FLKLNILSVHYPKLRTIKRFLYKIIDIYKQIEKIESALNNIDIEVLKNIAL
FT                 NAEQAAIFINSTNDEICLNETQIKNKYSQGIKEYTKIDMDPPKIPCVSCER
FT                 LCCERSMESVDKYLDKTNLVEELLDIHIPEKQNYWKRLKELYDSPNFNNGF
FT                 ICKCCSGKLKKYILPSTCVLNELYVKEVPDEIKTLNTYERMLIQRAKAFQT
FT                 IVKMGTVMKKNLPNYCKIDKVTGRTFHLPLPLEETLKKICPDTDPLNINHE
FT                 MFILIRGNPTKGKIIWEDYVDVKKIWHALHWLKRWNPLYFNIQIPSCPEQI
FT                 KDILGNLNLQYEDLAXDNKMIIHKIMSMNTILKIIYLIKMLTKLIRKQTYM
FT                 KSXKNDNTQNNEYEHXSENNISNQNVDKIDTETNIHEKPQIAALLTQKSQS
FT                 DPYYEQYSIYPLHTKXINETDSKLYQMLQIYATALDVRAEDLDLKCFPDLY
FT                 PYGMYGQHEKRSVSLRDYDYIRSRLTSKHXQFRLNIQYLFYLLFNNNIRQI
FT                 SAGIFHKLNVVNPRYKYTVKELTEXLEQDQLDSNLESIFSRLRGTEAYWKQ
FT                 VRNDLECMMNEYGPATFFITLSPGEWMWSALAEYIREANXWENDKRSISEL
FT                 IAADPVSASRYIRNRFQAMLAYILSSAHPIGKVAHYYYACEYQGRGLPHYH
FT                 CLFWIHDAPVYGKAPNKEIQKFILQNITCRIPNKHVSPELHRRVMAYQRHT
FT                 HNNYCMRKKKTKTGFKSACRFGFPRPITPKLVLREVSVAIANKRKLRNKSR
FT                 FYDLPRGPDEQCINDYMPALLVLWEGNNDAQFICESSYLLTKYVSSYGTKG
FT                 EKSTVDFSDIQSNKSLCSRLWSFSMRALNHRECGAIEAADTLLGHPLHATD
FT                 TDTVIRWLDVRMIRNRKLKPFKEIKKLPPDSTDIFYDSLIDSHYPNRPQEL
FT                 NSLCLYDFAKWFDIIKKKPVYKAEYYEMPGGLFCKKRKKPYLINHWKYNPI
FT                 INQKIIIIHYYYYFNLGGIPMNSNNQPEXYYXSLLLLFQPWRDTDELKNGE
FT                 DSFTMAFQKRQCELXDAMKYHDKCGXIREAMEKMNEIIQNQLLETQENKSN
FT                 PDNLPEGCVPIEIENAIKDFKDMAEKVVMNEADIENSISRFNVDQSNIFKK
FT                 ITSVLQSNDKILRIFISGPGGTGKSFLIETIVAWNKXIRKKETAVTAPTGI
FT                 AAYNVSGLTIHRLLHLPVEHGCTAKYKELSSAALKQIRQSLENVDLIIIDE
FT                 ISMVSNITLMYIHLRLTEIFNTSECDDGWFGKIHIIVFGDLLQLPPVREKF
FT                 AFVEVTKKEIEKYIGAINSFNLWTLFEYDELTINMRQKNDNQYNEILSRLR
FT                 LGFXTDTDINVLQQRKLKFSSTNSLEIMQELCAVYEKLPTDTVCLLPTRNM
FT                 CDILNDAMLXRIDSEDINLIANDSFKCPKNLQKKVLKMLDEDKDNACGIER
FT                 VIKIKINSKVMIRRNIDVSLDCLIGLVNGTIGSVISVAKDKGDEIISVRIK
FT                 LKDGTEHSIPKLEYKFVIMDKVYIIRQQFPICNSYGITIHKSQGLSLENAI
FT                 VEAGNSIFCSGQTYVALSRVTKLQGLHLINFDPTNVKADSSAILQYNRLRQ
FT                 KYRPDLQALVIQNDCMFSRPXAVQDRRWTVSKHILDIQANNSKLNIYLTVI
FT                 GLFMVSQMRIMYLVMLTLVYRXCFIVHLLEGFYWRPKVLTFIKYXSDSNWV
FT                 IHGFPNEDNVSCYANACIQSLFHCSSVRRILLEAKGFDLLKHSFNQYIAKT
FT                 PVNIKALREYANEQYSACEQQDAAEFLLHLCNASMFLQSVIKHEINVVTRC
FT                 PNCDERNSITTSNYILXLCLPDPMHIXTLQEVFDYNIDNWKNVEGECSNHC
FT                 ACKRLQKTTVHVKNTIIILQLLLFSVDHQTTXKITNFRMKDIPKTVLKINK
FT                 KKYKVINCIFHHGKSIETGHYTNVVRQNNHWFEINDMYIKQRPWPRGAKDA
FT                 YLLFLEEITGN*"
XX
SQ   Sequence 6398 BP; 2436 A; 902 C; 1049 G; 1945 T; 66 other;
     caaacgtaag tattatcaag aaaatagaga amaaatttta aaaaagcaaa gattacgtta        60
     tcacttaaat aaagagaaac gattagctag tgtcaaaaam tattacgaat caaataagga       120
     aaaaatttta gttcaaagaa aaaacaagag acatgaaatg agcttaaaac gaagcgttgt       180
     taagwcwaaa aktagsttag ctaagaaaat wrcaaagaaa tacaaatcta tcannataaa       240
     acaatctrat aaaaaattna twcaaacaaa agaaaaatat atacaaaatg ttatgcaaaa       300
     attagattgt ccatctgtat tagatcgtag gatagaagct gataaattag tcacrtctgc       360
     tttttatgtt cgagataatc atatttcgaa agtaaaaaga gaattgcwaa attktaagga       420
     aaaaattgaa gtttcyttaa ctagattagg tggtgaaccw atagatgacg ataaytgttc       480
     ttatgcactt actgctttat gtggtttacc taaacatact tcttcttcgg aaggatattt       540
     tggcgaatca acatacgatt tcacaaatgg acaaattaat gataaactag aaacacatat       600
     tattttgaac gaacaaggac aaacaatgaa tattctacca acgattgaat caaatactaa       660
     aagtaaaatt tggcaatgta atgattattg taaaaaagtt gatccagatg tattaaatga       720
     acttaacaat ttatttcaag atttaattga tgttacatat ataaatgctt acaattttct       780
     gaaaaaaatt gataattgtt cagcacaatc tcataattca gagaaacaag gccatccgat       840
     tatttgttat agcaaacctt tgttatgcac atcraaattt ttaaaattaa acattttatc       900
     cgtccattat ccaaaactcc gcaccatcaa acgattttta tataaaataa ttgatattta       960
     taaacaaatt gaaaaaatcg aaagtgcttt gaataatatt gatatcgagg tattgaaaaa      1020
     tattgcatta aatgctgaac aagcagcaat atttattaat agcactaacg atgaaatttg      1080
     cttaaatgaa actcaaataa aaaacaaata tagccaggga ataaaagagt acacaaaaat      1140
     agatatggat ccacctaaaa ttccttgcgt ttcttgcgaa agactttgtt gtgagcgcag      1200
     tatggaatct gttgataaat acttggataa aacgaatttg gtggaagaat tactcgatat      1260
     acatattcct gaaaaacaaa attactggaa aagattaaaa gaattgtacg attctccaaa      1320
     ttttaataat ggatttattt gtaaatgctg cagtggtaag ttaaaaaaat atatattacc      1380
     atctacatgt gttttaaatg aactttatgt taaagaagtc cctgatgaaa taaaaacttt      1440
     aaatacrtat gaaagaatgt tgatacaacg agccaaagct ttccaaacaa ttgttaaaat      1500
     gggtacagtg atgaagaaaa atttaccyaa ttattgcaaa attgataaag tcacaggtag      1560
     aacttttcat ttaccgttac ctttagagga aaccttaaaa aaaatttgtc cagataccga      1620
     tcctctaaat attaatcatg aaatgtttat tttaatacga ggtaatccga caaaggggaa      1680
     aattatttgg gaagattatg ttgatgttaa gaaaatatgg catgctttgc attggttaaa      1740
     acgttggaat cctttatatt ttaatataca gataccgtct tgtcctgaac aaattaaaga      1800
     cattcttgga aatctaaatt tacagtatga agatttggct amagataata aaatgataat      1860
     acacaaaata atgagtatga acacsattct gaaaataata tatctaatca aaatgttgac      1920
     aaaattgata cggaaacaaa catacatgaa aagccrcaaa tagctgcatt actaacacag      1980
     aaatctcagt cagayccata ttatgaacag tattctattt atccattaca tacaaaaara      2040
     attaatgaaa ctgattcaaa attatatcag atgctccaga tatatgctac tgctttggat      2100
     gttcgtgctg aagatttaga tttaaaatgt tttccagact tgtatcctta tggaatgtat      2160
     gggcagcatg aaaaaagatc tgtaagtttg agggattatg attatataag atctagattg      2220
     acatctaaac acycacagtt tagattgaat attcagtacc tattttattt gttatttaat      2280
     aataatataa gacaaatcag cgctggaatc ttycataaat tgaatgttgt taatccacgc      2340
     tataaatata cagtaaaaga acttacagaa maattagaac aagatcaatt agattccaat      2400
     ttagaaagta ttttttctcg tttgcgaggt actgaagcat attggaaaca ggttagaaat      2460
     gatttagaat gcatgatgaa tgagtatgga ccagctacgt tttttattac tttaagccct      2520
     ggtgagtgga tgtggtctgc attagctgaa tacatacgcg aagctaatkg ttgggaaaac      2580
     gataaaagat ctattagcga acttatagct gctgatcctg tgtcagcttc aaggtatatt      2640
     cggaacagat tccaagcrat gctagcttat atactttctt cggctcatcc aataggaaaa      2700
     gtagctcatt attattatgc ttgtgaatac cagggcagag gattaccaca ttatcattgt      2760
     ttattttgga ttcatgatgc accygtttac ggtaaagcac ctaataaaga aatccaaaaa      2820
     tttattttac aaaayattac atgtcgaata cctaataaac atgtttcacc ggaacttcat      2880
     agacgtgtta tggcttatca acgtcataca cataataact attgtatgcg taagaaaaaa      2940
     actaaaacag gtttcaagag cgcttgtcgt tttggatttc cccgtccaat aacacctaaa      3000
     ttagttttga gagaagtttc tgtagctatt gcgaacaaaa gaaaattaag aaataagagc      3060
     agattctatg atttaccacg aggaccagat gaacaatgta ttaatgatta tatgcctgct      3120
     ttgttggtac tttgggaagg taataatgac gcgcaattta tttgcgagtc ttcttacctg      3180
     ttaacaaaat atgtatcctc ttatggaact aaaggagaaa aaagtactgt agatttttcc      3240
     gatattcaat ccaataaatc tttgtgcagt cggctttggt ctttttctat gcgagcccta      3300
     aatcacaggg agtgcggagc aatcgaagca gctgacacat tgttagggca tcctcttcat      3360
     gctacagata ctgatactgt aattagatgg ttagacgtta gaatgatacg aaatagaaaa      3420
     cttaaaccat ttaaagaaat aaaaaaacta ccaccggact caacagatat attttacgat      3480
     tcattaattg acagccatta tccaaaccga cctcaggaat taaattcatt rtgtttgtac      3540
     gaytttgcaa agtggtttga tataataaaa aagaaaccag tatataaggc agaatattac      3600
     gagatgccag gaggtctctt ttgtaaaaag cgraaaaagc cttatcttat aaatcactgg      3660
     aaatataatc caataatcaa ccagaaratt attatyattc actactacta ctatttcaac      3720
     cttggaggga taccgatgaa ttaaaaaatg gggaagattc ttttacaatg gcatttcaaa      3780
     aaagacaatg cgaattaatk gatgcaatga agtatcatga taaatgtgga aygatacgag      3840
     aagctatgga aaagatgaay gaaattattc aaaatcaatt gctggaaacg caagaaaata      3900
     aatctaatcc agacaatttg ccagaaggct gtgttccgat tgagatagag aatgccataa      3960
     aagattttaa agatatggcc gaaaaagtcg tcatgaacga agcagatata gagaattcta      4020
     tttcaaggtt caatgtagat caatcaaata ttttcaaaaa aattacttct gtcttacagt      4080
     ctaatgacaa aattttgaga attttcataa gtggcccagg tggtactgga aaaagtttct      4140
     tgatcgaaac tattgtcgca tggaataaaa saatacgtaa gaaagaaaca gctgttacag      4200
     cgcctactgg gatagcagct tacaatgttt ctggtttaac tattcataga cttttgcatt      4260
     taccagtgga gcatgggtgt acagcgaaat ataaagaact atcgtctgca gctttgaaac      4320
     aaatacggca aagcttggaa aatgttgact tgattattat tgatgaaata tccatggtat      4380
     ctaatattac attaatgtat attcatttac gtcttactga aatcttcaat acttccgaat      4440
     gcgatgatgg ttggtttgga aaaatacata ttattgtatt tggtgattta cttcaacttc      4500
     cacctgttcg agaaaaattc gctttcgttg aagtaacgaa aaaagaaatt gaaaaataca      4560
     ttggagctat aaattcattt aatttgtgga ctttattcga gtacgatgag ctgacaatta      4620
     acatgaggca aaaaaatgat aatcaatata acgaaatact cagtagacta aggttaggat      4680
     ttmtwactga tackgatatc aatgttctac aacagcgaaa actaaaattt tcaagtacaa      4740
     atagtcttga aataatgcaa gaattgtgcg cggtgtatga aaaattacct actgatactg      4800
     tatgtttgtt accaacgagg aatatgtgcg atattctaaa tgatgctatg ctgmgtagaa      4860
     ttgattctga agatatmaat cttatagcta atgattcttt caaatgtccg aaaaatttgc      4920
     aaaagaaagt tttaaaaatg ttagatgagg acaaagataa tgcttgtgga attgagcgtg      4980
     taatcaaaat aaaaataaat tcaaaagtta tgataaggag aaatattgat gtctcattgg      5040
     attagtaaat ggcactatag gttctgtaat ttctgttgct aaagataagg gagatgaaat      5100
     catcagtgtc cgtataaaat taaaagatgg tacagaacat tcaataccta aactagaata      5160
     caaatttgtc attatggaca aagtatatat aatacgtcaa caatttccga tctgtaacag      5220
     ttacggaata actattcaca aaagtcaagg cttaagttta gaaaatgcta ttgtagaagc      5280
     aggtaattct atattttgtt ctgggcaaac ttatgtcgct ttatcacgag taacgaaatt      5340
     gcaaggctta catcttatca attttgatcc racaaatgtt aaagctgatt catccgcgat      5400
     cctgcaatat aatagattaa gacaaaaata tcgyccygay cttcaagcat tagttattca      5460
     aaacgattgc atgtttagta gacccartgc agttcaagat agacggtgga cagtatcaaa      5520
     acacatttta gacatacagg ctaataatag taaattaaat atwtatctga cagtaattgg      5580
     gttattcatg gtttcccaaa tgaggataat gtatcttgtt atgctaacgc ttgtatacag      5640
     agyttgtttc attgttcatc tgttagaagg attctattgg aggccaaagg ttttgacctt      5700
     ctaaaacatt cttttaatca atatatagca aaaacwcctg ttaatattaa agcattaaga      5760
     gaatatgcaa acgaacaata ttccgcttgt gagcagcaag atgctgctga atttctttta      5820
     catctttgta atgcatcyat gtttttgcar agtgttatca aacacgaaat taatgttgta      5880
     acaaggtgtc cgaattgyga tgaaaggaat tctataacaa cttcaaatta cattttgyca      5940
     ctttgtctac ctgaccctat gcatatacaw acattacaag aagtttttga ttataatata      6000
     gataattgga aaaaygtcga aggggagtgc agtaatcatt gtgcatgcaa aagattacaa      6060
     aaaactacyg ttcacgtaaa aaatacaatt ataattttac aactactatt gttttccgtt      6120
     gaccatcaga cgacawcaaa aataactaat ttcagaatga aagatatacc aaaaactgta      6180
     cttaaaatca ataaaaaaaa atataaagta attaattgca tttttcatca cggtaaatct      6240
     attgaaacag gacattacac taatgtggta cgtcaraata accattggtt tgaaataaat      6300
     gatatgtata ttaaacaaag accatggcct cgtggagcaa aagatgccta cttattattt      6360
     ttagaagaaa tcactggcaa ttaaaaaatw aaagttct                              6398
//
ID   Helitron-1_PBa repbase;    DNA;    INV; 4136 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4136
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 607-607 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. 3'-end is not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(786..1835,1769..3382)
FT                 /product="Helitron-1_PBa_1p"
FT                 /translation="MLYYMLCYMLCYMLTAFETAKQLVQKYLDNELQKQQD
FT                 ASQDDPENAIGVQNIEAGEAMQDFKDLGAKIKEEDVSEMIIKLNTDQKRVF
FT                 DRVISTIKLNKSVLRLYVSGEGGTGKSFLIKTIKCWIKQNLNKETAVAAPT
FT                 GIAAFNIDGLTIHRLFQLPVEHGHTPKYKQLSDHVLKVLRADLNDVILFII
FT                 DEISMISNLILMYIHLRLSEIYDTTECNDGWFGRKHILLFGDLLQLPPVHE
FT                 DFVFVHLLKEKIDKYIGTLGTINLWTTLFEYDELTINMRQQGDMAYRELLS
FT                 RIRIGLLTNSDHEILQNRKISFTNTSFNSRLDEICNFIINLYQLTLCVYFL
FT                 LVICVIFFYYQFIPVDTVCLLPTCHMCDILNTAMLNRINSKEILLIAEDTI
FT                 NCIPYIKKKVLKVLSKNDEDDTRTAGLSKQIIIKIGAKVMIRRNIDASLGL
FT                 VNGTIAKVISIVQDINTEYVEKIKLLLPTGSEYLIERVSVKFQVMDRAYVI
FT                 RKQFPLSLSYGITIHKSQGLSLQNAIMDIGNSVFNAGQVYVALSRVTSREG
FT                 LYLINYDPSSIKASEDAIIEYNRLKQTYKSEAKLITISKQKYTKIKDTLWT
FT                 LPKVISSVQESHETVQKNTVWVIHGFQNKDKVSSYANAVLQCLLHLNVIRK
FT                 QIFECDKLNVLGILMNRYENGISDLNTFTVRQDLGGNFSSCIKQDASEFLI
FT                 AICEKYDYIKNLVKHQIRSTIRCKTCDNTIVITNDNILISIPITNLKKDSY
FT                 DLNDLLNITFSRWYHSHDLCKNCTGKDTIFKKELTLTREILIIYLQLFSEQ
FT                 NGKLIKIDQFNLRAVPTTTISVGGQFYKVMNAIFHHGSSIEDGHYTSICRD
FT                 ETSNGWIDIDDAQINKKKWPRGAKNVYIYFFKKDY"
XX
SQ   Sequence 4136 BP; 1590 A; 508 C; 631 G; 1407 T; 0 other;
     tcaagagaca cgggtggtgt ctcgacgcca agttcacgcg cagcgaagtt cgcgtagaac        60
     ggcggcgaga cgcccgtggc tctatttacg cgagaccccg ggatgaactc ggtctacatt       120
     ttcatatctc agcaatgact gcattgatta agttttaatt acgcttaatc gatagctgag       180
     tatcaaatta tataagaaaa gtgtttttat tttttttctc cgtgttctac aaactgagat       240
     atcgcgacgc aatcgtgacg caaagttcaa attggtaaat ttaagaaacg tcctggtcgt       300
     cgtcgtgact ctcctttttc tgtcgcaaga ggcgctaatg aacgtctctg tatgacagct       360
     cttgcagcgc tcattttttt tatttgatat gtctttgaca gatgtccttc gtgtgaagtt       420
     gtacgtattg attaataaaa aagaagatat aacgtgtgtc acatataata gtaagtaata       480
     ttgtaataat aatgtaagta atattgtaat aatatataat acattgaaga aatagaaata       540
     gaaatagaaa tagaattaga tttttacaac aaattaaatt attagatttt tattattata       600
     gatttttatt atattattag attattgaca acaaatgtat tagattttta caacaaatta       660
     atatttatta ttaatattta ttaacaatta ttaacaaatt attacattaa acataaataa       720
     cataaaaata acataacata aaacataaat taatataaca taaaacaaca taaataatat       780
     gttatatgtt gtattatatg ttatgttata tgttatgtta tatgttaacg gcatttgaaa       840
     ctgcaaaaca gttagttcag aaatatctag ataatgaatt gcaaaaacaa caagatgcat       900
     ctcaagatga tccagaaaat gcaataggtg tgcaaaacat agaggcgggt gaagccatgc       960
     aggactttaa agatcttgga gctaaaatta aagaagagga tgtttctgaa atgataataa      1020
     aattaaacac ggatcaaaag agagtatttg atagagttat tagcactatt aaattaaata      1080
     aatcagtatt acgattatat gttagcggtg aaggtggtac tggaaaaagt tttctaatta      1140
     agactattaa atgttggata aaacaaaatc ttaataaaga aactgctgta gcagcaccta      1200
     caggtattgc agcatttaat atagacggtt tgacaattca cagattgttc caattacctg      1260
     ttgaacatgg tcatactcct aaatataaac aattatctga tcatgtattg aaagttctac      1320
     gagcggattt aaatgatgtt atacttttta taatagatga aatatcaatg atatctaatt      1380
     taattttaat gtatatacat cttcgattat ccgaaatata tgacactact gaatgtaatg      1440
     atggctggtt tggtagaaaa catattcttt tatttggaga tcttcttcaa ttacctcctg      1500
     tacacgaaga ttttgttttt gttcatttat tgaaagaaaa aattgataaa tatattggca      1560
     ctttaggaac cattaatttg tggactacat tatttgaata tgatgaattg acaattaata      1620
     tgcgacagca aggagatatg gcttatcgtg aattgttatc gcgtattcgt attggtttat      1680
     tgacaaattc agatcacgag attcttcaaa atagaaaaat atcctttacg aatacttctt      1740
     ttaattcaag attggatgaa atatgtaatt ttattatcaa tttataccag ttgacactgt      1800
     gtgtttactt cctacttgtc atatgtgtga tattttaaac actgcaatgt tgaatcgtat      1860
     taattcaaaa gaaatattat taattgctga agacacgata aattgtattc catacataaa      1920
     aaagaaagta ttgaaagtat tatcgaaaaa tgatgaagat gatactagaa cagctggact      1980
     ttcgaaacaa attattatta agattggagc aaaagtaatg ataagacgta atattgatgc      2040
     tagtttggga ctggtaaatg gtacaatcgc gaaagtaata tcaattgttc aagatataaa      2100
     tactgaatat gtagaaaaga tcaaactttt attacctaca ggttcagaat acttgattga      2160
     aagagtcagc gttaaatttc aagtgatgga tagagcttac gttatcagaa aacaatttcc      2220
     attatcatta agttatggaa tcactattca taaaagccaa ggattaagtt tacaaaatgc      2280
     tattatggac attggtaatt ctgtatttaa tgcaggacaa gtttatgttg ctttgtcacg      2340
     agtaacatct agagaaggtt tgtatttaat taattacgat ccctcatcta taaaagctag      2400
     tgaagatgca attattgaat ataatcgatt aaaacaaacg tataaatcag aagcgaaatt      2460
     gattactatt tcaaaacaaa aatatactaa aataaaagat actttatgga cattaccaaa      2520
     agttatttct tctgttcaag aatcacatga aacggttcaa aaaaatactg tttgggtaat      2580
     acatgggttc caaaataagg ataaagtttc atcttacgca aatgcagttt tgcaatgtct      2640
     tttgcattta aatgttatta gaaaacaaat ttttgagtgt gataaattaa atgttttagg      2700
     tatattaatg aatcgatatg aaaacggaat atctgatttg aatacattta cagtacgaca      2760
     agatttagga ggtaattttt ctagctgtat aaaacaagat gcatctgaat ttctcatagc      2820
     tatctgtgaa aaatatgatt atataaaaaa tctagttaag catcaaatac gttccactat      2880
     acggtgcaaa acttgtgata atacaattgt tattactaat gataatattc ttatttcaat      2940
     tcccattact aatttaaaga aagacagtta cgatcttaat gatttattaa atattacttt      3000
     ttcgaggtgg tatcactctc atgacctatg taaaaattgt acagggaaag atacaatatt      3060
     taaaaaagaa ttaacattaa cacgagaaat acttatcatt tatttacaat tattttcaga      3120
     acaaaatggt aaattaataa aaatagatca atttaatttg cgtgcagtac caacaactac      3180
     aatatcagta gggggacaat tttataaggt aatgaatgcc atttttcatc atggatcatc      3240
     tattgaagat ggtcattata caagtatatg tagagatgaa acgtctaatg gatggataga      3300
     cattgatgat gcgcaaatta acaagaaaaa atggcctaga ggagcaaaaa atgtgtatat      3360
     atattttttt aaaaaagatt attaaaaaat aatgactgaa tactgattgt tttttctagt      3420
     atatataaag taaaaaaatg tttcaaatat gctaaataat aaatactatt tgttactaaa      3480
     aaaatgagtg atatcctaat aaaattacct tttaaaaaag gtaaaaaata acgccaagtt      3540
     cacgcgcccg ttttcttatt tatgtaaaag aaagaatttt atacaaaaat ttccatctac      3600
     aaaagtcttt ttaataataa atttcatatt ggtacaaaag atgtgatatg aagaactggc      3660
     gccaacttct aatttaataa aataaaaaga gctttacatt gaaatacatt ttattttgta      3720
     gttcattttt atttgaaaaa tcgtttcatt atttctacaa aaaacatgat atcaaaaatt      3780
     ggcacaaact tttaattata tgaagtagaa aagaaacttt gcaaaggtga aaaaagatgt      3840
     tatcaatcca aaattaatgt caatttgtag ttgccaaaaa aattttattg aattattgta      3900
     cttgtgttta tataaaaata aaatataaaa gaaaatctga tgtgtaagaa aaaaaaacga      3960
     cgtacaaaaa cttggcgcgc ccgggtcgca ttaaaacacg tacgtacaca cttactgtat      4020
     tatattgcac tcttactgtt tatcttttta cattaataat gtatatatta cttttaaaaa      4080
     tatttgtaaa taaatttttt atataatttt tatataattt tctttaacat tatatg          4136
//
ID   Helitron-1_RPr repbase;    DNA;    INV; 3281 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3281
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3235-3235 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(652..879,831..3002)
FT                 /product="Helitron-1_RPr_1p"
FT                 /translation="MAVFRIENNNVHSPPLNQNDEITNYQIGRYISSNEAV
FT                 WRIFGFPIHERDPAVIHLAVHLENGQRVYFRTIQRLIMLKRPARIFQNDTA
FT                 LDHAINPPKTTLTEFFELCNRADAFGAFAQTLLYSEVPRYFTWAQSKKWIP
FT                 RKQGIPVDACPGLFKSNSLGRVYTVNPRQTECFYLRLLLVNVTGPLSFQDI
FT                 RKVDGQQYPTYKDACLALGLLEDDNHWDSMLAEAALNCTGTQIRLLFAIVL
FT                 TTCFPARAQMLWDNHKDSMTDDILYRHRTRCNDLTISFSEAMYNEALIAIE
FT                 DLCIAIANLPISHFGMGSPNRSASDLLNTDMNRELQYDTVQMASIVSRNVP
FT                 LLNDEQKIIYDRIMLAVSAGQGGFFFLDAPGGTGKTFLISLLLAEIRSKNG
FT                 IALAVASSGIAATLLDGGRTAHSAFKLPLNIKNNPDAVCNIKKQSSMATVL
FT                 KQCKIIIWDECTMAHKHSLEALDRTLKDIKNNDKLFGGTLLLLSGDFRQTL
FT                 PVIPRSTYADEINACLKSSRLWRNVEKVQLTVNMRVQMLQDPSAETFSKPL
FT                 LDIGDGKVAVHENTGCIKLQTDFCTIIDSQNSLIDHIFPDVHTQYANHKWL
FT                 AERAILAAKNVDVNGLNLKIQQLLPGDLVSYKSIDAVCDTNETVNYPIEFL
FT                 NSLDLPGMPPHHLQLKVGSPIILLRNLNPPRLCNGTRLVIKKLMKNVIEAI
FT                 ILNGKFQGENVLLPRIPMIPTDVPIEFKRTQFTIRLAFAMTINKSQGQTLS
FT                 VCGLDLETPCFSHGQLYVRCSRVGKPSSLFVLAKDGLTKNIVHSIALRD"
XX
SQ   Sequence 3281 BP; 1021 A; 644 C; 591 G; 1025 T; 0 other;
     tctaatatat aaaattctcg tgtcacggtg ttcgaacttg aactcctccg aaacggctcg        60
     atcgattttt gtgatcctta gcgtgattgt cggccagggt ggagaatcgg ccaacatcta       120
     tttttcatcc ccctaaatgt taagggtagt ccacccctaa attttttttt tttatttttt       180
     aggcaaaatt ttttgttttt attattttat gacacatcat acaaaaatac atacaaccct       240
     aaatttttac ccctctacga tcaaccctta tattttattt gtaaacttta atttttttta       300
     gtaaaatttt tttttttttt tgtgatgact tacaataaaa aatctcatat tactctcaac       360
     ttttcacccc tctacgatca acccctattt tttatttgtt aattataaac tttaattttt       420
     tggcaaattt ttttttttat tttttgatga cttacaataa aaaatctgga aaatggcgga       480
     caatctttca ttaaaactac caacaacgca gacatcgaca ttgacaatcg ttgggtggta       540
     ccatattctc ctctgctgag caaaaccttt aatgctcata taaatgttga gtcatgcagt       600
     tcggtgaaga gtatcaaata tatttgcaag tatgtgaata aaggaagtga tatggctgta       660
     tttcggattg aaaataataa tgttcattct cctccgttga atcaaaatga tgaaatcacg       720
     aattaccaaa ttggccggta tatcagttcc aatgaagctg tctggcgtat tttcggtttc       780
     ccaattcatg aacgggatcc agcagttatc catttagctg tccatcttga aaacggccag       840
     cgcgtatatt tcagaacgat acagcgcttg atcatgctat aaatccaccg aaaactacgc       900
     tcaccgaatt ttttgaattg tgcaatcgtg cggatgcttt tggtgccttc gcacaaacac       960
     tgctctattc tgaagttccg cggtatttta catgggctca atcgaaaaaa tggatacccc      1020
     gcaagcaagg gataccagtt gatgcgtgcc ccggtttatt caaatcaaat agtttgggtc      1080
     gtgtatatac cgtcaatcca aggcagactg agtgctttta tctgcgacta ttgttggtta      1140
     atgtcaccgg accattgtca tttcaagata tacggaaggt agatggacaa cagtatccta      1200
     cgtataaaga tgcatgcctt gctctaggct tgctagaaga cgacaatcat tgggacagca      1260
     tgcttgctga agcagcatta aactgcacag gaacacaaat tcgtctacta tttgctatag      1320
     tactgactac atgtttcccg gcccgagcac aaatgttgtg ggataatcac aaagattcaa      1380
     tgactgatga tatattgtat cgacatcgta caaggtgcaa cgatctaaca atatcattca      1440
     gtgaagcaat gtacaatgaa gcattgattg ctatcgagga tctttgcatt gctattgcga      1500
     atttaccaat cagtcatttc ggtatgggct caccgaatcg aagtgcatct gatttactca      1560
     acacagatat gaatcgtgaa ctacagtacg atactgtaca aatggcgagc attgttagcc      1620
     gcaatgttcc actacttaat gatgaacaaa aaattatcta cgaccgtatc atgctggcag      1680
     tttcggcagg acaaggagga ttcttttttt tagatgcacc aggtgggact ggcaaaacat      1740
     ttcttatttc gctacttctt gccgagatac gatcaaaaaa tggcatcgca ttggccgttg      1800
     catcttctgg cattgcagca actttattag atggaggcag aacagctcat tcagcattta      1860
     agctgccgtt aaacattaaa aataatccag atgcagtgtg caacataaaa aaacaatcgt      1920
     ctatggccac agtgctgaaa caatgtaaaa ttattatctg ggatgaatgc actatggcac      1980
     acaaacattc gcttgaggca ttggatagga cattaaagga tataaaaaac aacgataaac      2040
     tatttggcgg cactttgtta ctcctttcag gtgatttcag acaaacactt cccgttattc      2100
     cgcgttcaac ctacgctgat gaaatcaacg cgtgcttaaa atcatcgcga ctatggcgta      2160
     atgttgaaaa agtacaactg acggtgaaca tgcgcgttca aatgcttcag gatccatccg      2220
     ccgaaacttt ctctaaacca ctgttagata ttggcgatgg gaaagttgct gtacatgaaa      2280
     atactggatg cataaaatta cagacggact tctgcacaat catcgactcg caaaatagtc      2340
     tcatcgatca catatttccc gacgtacaca cacaatatgc aaatcataag tggctggcag      2400
     aaagagcgat cttggcagct aaaaatgtgg acgtcaatgg gttaaattta aagatacaac      2460
     agctgttgcc tggggacttg gtgtcatata aatctatcga tgcagtttgc gataccaacg      2520
     agactgtgaa ttatccaatt gagttcttaa attcattgga tttgccaggc atgccaccac      2580
     atcatttaca attgaaggtt ggatctccga ttattctact tcgaaactta aacccaccac      2640
     ggctatgtaa tggcacacga ttagtcatta aaaaattaat gaaaaacgtt attgaagcca      2700
     tcatcttgaa tggcaagttt caaggcgaaa atgtgttgct gccacgaatc cctatgattc      2760
     ctacagatgt gccaattgaa ttcaaacgca ctcaattcac aattagattg gcattcgcta      2820
     tgacaatcaa taagtcacaa ggacaaacat tgtctgtatg tggcttagat ttggaaacac      2880
     cgtgcttctc ccacggacaa ctatatgtgc gatgttctcg cgtgggaaaa ccatccagtt      2940
     tgtttgtgtt ggctaaagac ggactaacca aaaatattgt acactctatt gcgctaagag      3000
     attaattttt ttttttttca actgccataa ttgatagtaa aaatataaat atttattttt      3060
     gatgtttaga tagctatcaa agactgttgt ttaaaatata ttcgttactc taataaagat      3120
     ttatttatta acctaaataa aacatacttt tattctttat aatgcattcg attataaata      3180
     cttccccgca cacttatagt agataattat ttttatttaa ctataaaaat gtttcctaga      3240
     aataacatac atggcaaaac aacgtttgcc gggtcagcta g                          3281
//
ID   Helitron-1_SI repbase;    DNA;    INV; 2858 BP.
XX
AC   .
XX
DT   24-NOV-2011 (Rel. 19.02, Created)
DT   24-NOV-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-type transposon sequence - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-1_SI.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2858
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 315-315 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           102..1901
FT                 /product="Helitron-1_SI_1p"
FT                 /translation="MEFFEIKETEDDSESLSDGDNXLNPKIETQGAENNAE
FT                 ATVVNNQGKAMLTQIADNNDGYYEQYTIHPLYEKKSRESAAALYQMLKIED
FT                 SPLDNREKSLDLLCFPDLYPFGVNGQRETRRIKLHDHEFIKCRLTSKHPRY
FT                 RLNQQYLFYLLNNANNRQLSRGIYHKLNVTNLRDQYTAVQYLEAMHKELLE
FT                 SNLSTIFSTLRNTEQYWRKPRSDLNCMTQHYGPATRFVTLSPGEWEWNDLG
FT                 EYIREVNGWRNDSSCISVLVARDPVSTSRFLDNKFRAMLDFICSEDHPIGE
FT                 VTHYFWRREYQGRGIQHFHLLIWIKDAPIIGESSVEDVAKFILQHISCKMP
FT                 DKNISPTLYKRVNTYQLHKHNDYCLRSKKTGRKVIRVCRFGFPRVITETLI
FT                 IKDVVSSIAGRKKLKHRSRLYDLPRTDNEVNVNDYNPVLLTAWEGNMDIQF
FT                 VGEXSTLLTWYVTKYVSKAGKCELSENILESXDRKNKSVASCLWNVXLRFL
FT                 NHRECGALEAADTLLGIPLCGTDPKTTIRWLDVNQIRYRKVKSCKEVEALD
FT                 GESKDIFCPSIIDNHYPNRPTEFESTSLYEFAQWYDITKIKPKSKNIIXYQ
FT                 DG"
FT   CDS           1828..2856
FT                 /product="Helitron-1_SI_2p"
FT                 /translation="MNLHNGMILRKSNQKVKILYXIKMDNXYYLKRRQRAY
FT                 LINHYRYDVNTRPEDYFFALLLMFQPWRKIEELKNGCDTYAESFHTVKLHL
FT                 VEALQYHERMXELRKAFETAKELVQQQLDEKQQHVSQDDPDNPIGVQNVQA
FT                 GEAMQDFKDLGNKXXEEVDMSQMISKLNVDQKRVFDRVTSTVMSNEKSLLR
FT                 LYVSGEGGTGKSFLIKTIKCWIKQNLNKDTAIAAPTGIAAFNVDGLTVHRL
FT                 LQLPVEHGHTPKYKQLADHVLKVLRADLKDVVLFIIDEVSMISNLTLLYIH
FT                 LRLSEIFDTTDCDDGWFGQKHILLFGDLLQLPPVHEDPAFVTLSKEKIQKF
FT                 "
XX
SQ   Sequence 2858 BP; 970 A; 438 C; 567 G; 872 T; 11 other;
     aaaaagtatt cgatgcttta acgtggttaa aacgttacaa tcctctgtac aaacatatta        60
     tactgccaga tacncacgaa ggattatgtt cagaaaaaga tatggaattt tttgaaataa       120
     aagagacgga agatgatagt gaatctcttt cggatggcga taatatnttg aatccaaaaa       180
     ttgaaacaca aggagcagaa aataatgcgg aagctactgt tgtaaataat cagggtaaag       240
     caatgttaac tcagattgct gataacaatg atggttatta cgagcagtat actattcacc       300
     ctttgtacga aaagaaatcg cgtgaaagtg ctgctgcgtt gtatcaaatg ttaaaaattg       360
     aagattcacc cttggataat cgtgaaaaat ctttagatct gttgtgtttc ccagatttat       420
     atccttttgg tgttaatgga caacgtgaaa ctagacggat taaacttcat gatcacgaat       480
     ttattaaatg tcgtttgaca tctaaacacc ctcgatacag attaaatcaa cagtacttat       540
     tttatttatt aaataacgca aataatcgtc aattgagtcg tggtatttac cataaactca       600
     atgtaactaa tttgcgagat cagtatacgg ctgtgcaata tttagaagcg atgcacaaag       660
     aattattaga atctaacttg agcacgatat tctccactct gagaaatacg gaacagtact       720
     ggcgtaaacc acgaagtgat ttaaattgta tgacgcaaca ttacggacca gcgacacggt       780
     ttgtaacatt gagtcctggc gaatgggagt ggaatgattt aggtgaatat attcgtgaag       840
     taaatggatg gcgtaatgat tcgtcttgta tcagtgttct cgttgccaga gatcccgtgt       900
     caacatcgag atttctcgat aataaatttc gggcgatgct tgattttatt tgttccgaag       960
     atcatccgat cggagaagtt acacattact tttggcggcg agaatatcaa ggcagaggca      1020
     tccaacactt tcatctgtta atttggataa aagatgctcc aattattggt gaatcatctg      1080
     tcgaagatgt tgccaaattt attttacaac atataagttg taaaatgccg gataaaaata      1140
     tttctccaac gttgtataaa cgagttaata cgtatcaatt acacaaacat aacgattatt      1200
     gtcttcgttc taagaaaacg gggcgtaaag ttattcgtgt atgtcgtttt ggttttcctc      1260
     gtgttattac ggaaacgtta atcatcaaag acgttgtaag ttcgatagca ggtagaaaaa      1320
     aattaaagca tagaagtagg ctttatgatc ttcctcgaac agataatgaa gttaatgtaa      1380
     atgattataa tcctgttctt cttactgcgt gggaaggaaa tatggatata caatttgttg      1440
     gtgaaaantc aacgttgctt acttggtacg ttactaagta tgtaagtaaa gcaggaaagt      1500
     gtgaattatc tgaaaatatc cttgagagtg nagatcggaa aaataaatca gtggcgagtt      1560
     gtctctggaa cgttgnttta cgattcttaa atcataggga atgtggagct cttgaagctg      1620
     ccgatacatt gctaggcatt cctttatgcg gaactgatcc aaaaacgact attagatggc      1680
     tagatgttaa tcaaatacga tacagaaaag tcaaaagctg taaggaagtt gaagctcttg      1740
     atggagaatc gaaagacata ttttgtccat ctataataga caatcattat ccgaatagac      1800
     cgacggaatt tgaatctacg tctttatatg aatttgcaca atggtatgat attacgaaaa      1860
     tcaaaccaaa aagtaaaaat attatatntt atcaagatgg ataatgntta ttatcttaaa      1920
     cgacgacagc gtgcgtatct tattaatcat tatagatatg atgtcaatac taggccggaa      1980
     gattatttct ttgcgttact tcttatgttt caaccatggc ggaaaataga agagcttaaa      2040
     aatggttgtg atacttatgc ggaatcattc cacactgtaa aattacatct cgtcgaggca      2100
     ttgcagtatc acgaaagaat ggangaattg cgaaaagcat tcgaaactgc gaaggaatta      2160
     gttcaacaac aattggacga aaagcaacag catgtgtctc aggatgatcc tgataacccg      2220
     ataggtgttc aaaatgttca agctggtgag gcaatgcaag attttaaaga tcttggtaat      2280
     aaangtcncg aagaggtcga tatgtctcaa atgatttcaa aactgaatgt ggaccaaaaa      2340
     agagtatttg atagagtcac tagtactgta atgtcaaatg aaaaatcgtt actacgatta      2400
     tacgttagtg gagaaggagg tactggcaaa agtttcttaa ttaaaactat taaatgttgg      2460
     ataaaacaaa atctcaacaa ggatactgct atagcggcac ctaccggtat agcagcgttt      2520
     aatgtagatg gtttgacagt acatagattg cttcaattac ccgttgaaca cggtcatact      2580
     cctaagtata aacaattagc tgatcacgta ttgaaagttt tacgagcaga tcttaaagat      2640
     gtcgtccttt ttataattga cgaagtatca atgatatcta atttgacttt gttgtatata      2700
     catctacgat tatctgaaat attcgatact actgattgtg atgatggntg gtttggtcaa      2760
     aagcatattc ttttatttgg agatttgctt caattacctc ctgtgcacga agatcctgcc      2820
     tttgtcactt tatcgaagga aaaaattcaa aagtttct                              2858
//
ID   Helitron-2N1_BTa repbase;    DNA;    INV; 2814 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2814
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 258-258 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 2814 BP; 823 A; 487 C; 563 G; 941 T; 0 other;
     tctaaaacta taaaggagag gccccaattt tgtacccaat gtttcagcga cttcccgaag        60
     gcggatttcc ttgaaacttt gtacgcatgt gcggttcgtg ctgaaggggt gcaattcgtc       120
     gtccgatttt cgaaattttg attctaaggg ttgaaaacac gctaaaaaag ggtgactcgt       180
     gtgttagagc ggtgttccgc gatcgatcgt cgtcgtctgg tcgtcgtggt ttcccttctt       240
     ttattgcgtc tcgatcagct gttttttctg tctaattttg gagattccga accggagcag       300
     tgttgccgaa atcacgaaat ctgtaatttc acgttatatt ttcatatgtg ttaagaatgt       360
     tctgcgttca ttcttgaaag ttgatgtaat tagaggattg taaattgttc gttctcggtc       420
     acctgatgac tcggctgccc gaggcgttcg tcgtcatgga tattcgtcgt ttatgaagaa       480
     ttccgatttt ttttcgtaca gtgcgcgtcg tcttttgaat tttgttaata tttgtcgtgt       540
     atgaagaatc ccgaattttt agtaaagtgc gcgtattcgt tttaatattg agaatggatc       600
     ggagtcgaaa acgtgggcgt ccggcgaagc gtggcaatgt ttctcgcaat ttatccgcgc       660
     gacgcaaagt gcggcatgat ggctatctca gtgagataga taatgtacga cgtaggggtg       720
     aacagggaaa taacctcaat tcatttcggc agagcactga taatattatc gaaaatgatt       780
     atccggaaaa taatttcgga cttttaaatg tgaagtgcca gtattgtgat ggaaaaatta       840
     ttgaaatttt atttttccat cgagaagctg gtcatcataa aacttaaatt ctccatgatt       900
     tttcgtattc gatagcagca aatttggttc aaaatttaaa gtcgtaaatt tggattgttt       960
     ctcatggaag agatgattta agaacggaaa ttttgaaaca ccgcaacgga tatacgtggt      1020
     ttcgcacttc agtcgtgcga tacggacatc catcaagttt aaaaaaatgc atcaagtccc      1080
     cgtcaccgcc gaccaacgcg tttgtcgatc gaatcaacta caggtagtat gagcaggggg      1140
     tctaaacgcc ttcaattttt tgaacgcaat acggacatcc gtcgaggttg tatagttgta      1200
     tcaaggcgcc gtagcaaacg cgtcccattg tttatcgtta catacgaata taagttgaga      1260
     gaggccagtc ataatgcctt caattttata catacatatt tttgggcaaa atgagagacg      1320
     acgtttcttc ttttgcgacg ttgcagactt ccttgaaatt ttatttttct ttcgagaagc      1380
     tggtcaacaa aaaaacttaa attctccatg atttttcgta tgcgattgca gaagatttgg      1440
     ttcaaaattt atgtcgtaaa tttggattgt ttctcatgga agggatgaat taggaacggg      1500
     aaattttgaa acaccgcaat ggagatacgt ggtttcgcac tacagtcggt gcgatacgga      1560
     catccatcaa gtttaaaaaa atgcatcaag tccccgtcac cgccgaccaa cgcgtttgtc      1620
     gatcgaatca actacaggta gtatgagcag ggggtcaaaa cgccttcaat tttttgaacg      1680
     caatacggac atccgtcgag gttatatagt tgtatcaagg cgccgtagca aacgcgtccc      1740
     attgtttttc gttacagacg aatataagtt gagagaggcc agtcatgatg ccttcaattt      1800
     tatacataca tatttttggg caaaatgaga gacgacgttt cttcttttgc gacgttgcag      1860
     acttccttag aaattttatt tttctttcga gaagctggtc aacataaaac ttaaattctc      1920
     catgattttt cgtattcaat agcagaagat ttggttcaaa attatatgag ctttggaagc      1980
     agacagagat gcaaaagcca tacaactgtt gtacctcaaa atgttggtca tgaaaatagg      2040
     tttggagaag aggtcgcgaa gttggtcttc gattccaggc tcggcaagtc tgagaagacc      2100
     attatgacag catctgttaa aatggccgtt cacctcctct tttttgaaat gcaaggcatc      2160
     acaatactgg tacttcacat ttaaaagtcc gaaattattt tccggaataa tttaattttt      2220
     ccagattata aatttaaatt gttattaaat gatgataaat tcaaaattcc aattccaatt      2280
     tccaaaattt cagagcatgt tatatcttct ttcaaaattt attgtcaatt caagttgcta      2340
     ttcaattaaa ataaattact taactacttt tttaggtcta gcgcaagatc tcaaaatgtc      2400
     tgtcacactc atgattttat attttttaag tttattcttt tgtatgattt ttcatttaat      2460
     gtttttagtg tagagcaaca tctcaaaatt tgcctttttt atttattgaa attaataaat      2520
     acatcttctt acaacagtta tttatttttt aatttcaaga ctgctgggtc tataaattac      2580
     taccatattt acaaaattga tactcgcaaa catgtttttt gtttttgctg atgggtacaa      2640
     caacagcccc catatgtaaa aatattttgt agcttctgaa taattatatt aaaaaatata      2700
     aatatgggca taataggtat agtaaaatat attaatacaa aagttattgt tataacatgg      2760
     tgtaatttca ttaatgacgg tttatcaccg tgcgaagcac gggttggttg ctag            2814
//
ID   Helitron-2N1_DSuz repbase;    DNA;    INV; 720 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-720
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 114-114 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
SQ   Sequence 720 BP; 190 A; 179 C; 145 G; 206 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgtcggaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccccataaag tatatatatt cttgatcagg atcactagcc       120
     gagtcgatct agccatgtcc gtctgtccgt ctgtccgtct gtccgtctgt ccgtctgacc       180
     gtctgtccgt ctgtccgtct gtctgtccgg atgaacgctg agatctcgga aactatgaga       240
     gttaggctat tgagatttgg cgtacagatt cctgagcttc ttacgcagcg caagtttgtt       300
     tcagtagact gccacgccca ctctaacgcc cacaaaccgc ccaaaactga aactcctaca       360
     gttttgatgc tagatagaaa attttaactg aaatgtattg ttctcatcaa tacctatcga       420
     ttgacctaaa aaaaagtttg ccacgcccac ttaaacgccc acaaaccgcg aaaacctgtg       480
     acgcccacaa tttggatgct agatgaaaaa tttgaactga aatgtattgg tgtcgtcaat       540
     acctatcgat tgatccaaaa ataaatttgc cacgcccact ctaacgccca taacgcttaa       600
     atctgtctac cgccggtagg tggcgcattt taatttcgct ttgctgcttg catatctcca       660
     tttccctttg agtaacgggt atctgatagt cgaggtactc gactatagcg ttcttccttg       720
//
ID   Helitron-2N1_DVir repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   31-MAR-2007 (Rel. 12.03, Last updated, Version 1)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; Helitron-2_DVir; Helitron-2N1_DVir.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-928
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 131-131 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron transposons transposed in the Drosophila virilis genome
CC   a few million years ago (numerous copies are less than 5%
CC   divergent from the consensus sequence). Helitron-2N1_DVir is a
CC   deletion derivative of the autonomous Helitron-2_DVir. These
CC   transposons are usually inserted in the TTT|TTT target sites
CC   without the target site duplications (the insertion site is
CC   marked by "|"). Different families of Helitrons constitute ~5% of
CC   the D. virilis genome.
XX
SQ   Sequence 928 BP; 286 A; 179 C; 157 G; 306 T; 0 other;
     ttataccctt gcagagggta ttataatttt gtcgtgaaat gtgtaacgca tagaaggaga        60
     catctccgac cccataaagt atatatattc ttaatcagca tcaacagccg agtcgatata       120
     gccatgtccg tctgtccgtc tgtctgtttc tatgcgaact agtccctcag ttttaaagct       180
     atcttaatga aactttgcag aactccctct ttctgttgca cgcagcacat atgtgaaaac       240
     cagctggatc ggaccactat atcatatagc tgccatagga acgatcggtc gaaaattaag       300
     tttttgtatg aaaaaacatt ttgtttatca agatatcttg accaaactcg gcatttatta       360
     gttttacttt actcctcata tatatgcaaa atcctattaa gatcggacca ctatatcata       420
     tagctgccat aggaacgatc ggtcgaaaat taagtttttg tatgaaaaaa cattttgttt       480
     ttcaagatat cttgaccaaa ctcggcattt attagtttta ctttactcct catatatatg       540
     caaaatccta ttaagatcgg accactatat catatagctg ccataggaac gatcggtcga       600
     aaattaagtt tttgtatgaa aaaacatttt gtttttcaag atatcttgac caaactcggc       660
     atttattagt tttactatgc tcctcatata tatgcaaaat cctattaaga tcggaccact       720
     atatcatata gctgccatag gaacgatcgg tcgaaaatta agttgtatga aaaaacattt       780
     tgtttatcaa gatatcttga ccaaactcgg catttactat tttcccggta cttcttagat       840
     aggggcaaag cactatgagc attatgaaaa ggttgggtct gcaagggtat tagatctttg       900
     gcgtgccgaa gatagccctt ctttctcg                                          928
//
ID   Helitron-2N1_RPr repbase;    DNA;    INV; 2409 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2409
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3236-3236 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined.
XX
SQ   Sequence 2409 BP; 817 A; 365 C; 366 G; 861 T; 0 other;
     ttaaaactgt ccggtaggac agttgtataa gggttgatcg tcaaaaactg cacgaaaaag        60
     cgtaacgttg aaaaacaccc aactttgaca atttttttct ctttttctat aaaagataaa       120
     attcccaaat tttctttaaa atatagggca aaccctcctt tatcactgta atttttttgc       180
     aacaacccag atctaatagt tttcgagaaa aaagttgccg aaaatgagca aaaacggcat       240
     tttcagaaat tgttgttgtt cttgttcttg ttcttgttct tgttcttgtt gttgttacct       300
     tttttgtaaa ctgcgtagcg cctaaacgcg cgaaccgatt ttcatgaatg aggtgtcatt       360
     cgattcggaa ttttatgtag atgtgccttt tgggggtctc gatgctgtac attgaatggg       420
     agaggagtta gcccccttta tgtaaagccc cctccaaaat tattattact aattactctg       480
     taaatcttag cccgattttg ataaaatttg gtaggatgac agggttaggg ctcccctacg       540
     taacattaaa gcgacgatct gctcttacac ttgttaaggg gaagtatagc aatcgtttca       600
     aattatcgac aagtgaaccg attttcatga atgaagtgtc aatcgaatcg aaattttgta       660
     cagatttgaa ctttaaaagt ctcgacgccg tgcctcataa ggaggggagt tcgccccacc       720
     caaataaggc ccattctaaa actattatta ccaatatttc tatatcgctt atgccgattt       780
     tgataaaatt tagcacgaag aagtggttaa agctcctcta cgtgggtgtg aagtgccttc       840
     atgctcttac acctactaag aggaagtatt gcaatcgata aaattatcac tgagtgaacc       900
     gatttacatc aatgaattgt cgttcgattc aaaatctttg cttctcagcc ttttagggag       960
     aagtactgta atcgcagttt atttttctta ctcctcttaa aaggaagtac ttaaatcgca      1020
     atttaatttt gctatttacg tacaaatacc ttcctatttt attcaaaacg ctttctcaaa      1080
     aaagttgtta ttgaggatgg caactataat cattctttaa aaagatctct ccaatggtag      1140
     ttatggttcc gacttaacac cttatcaggt tataatgata gaattgctta ttctaaattt      1200
     taaaaaaatc tgtgaagcag ataagtaact ttgtaaaata gacaaaaagg aaaatctatc      1260
     caaaaggtac aaaaatctct ttaacaaaaa cttacagttt aaaaagttaa gtataagggt      1320
     tgattaaacg ccaaaaggta cacaaatcag caagtaccca acatttcatt aatacttcat      1380
     tgatattatt taagtaattt tactgcatta attttcatta atatttttta gaattcatta      1440
     gatgtcacag acccttatgc tggccagttc attcataata tttttttgtt ataattatga      1500
     taaaatgtat attataactt cgttattaaa taggtacttt attttaactg tattccaaat      1560
     tattcttctg atttatcttt aatatgccct ttattctgaa gttgtcacat atatgtacat      1620
     gcatgttaaa gtagaaaaag acaaagttag agtcggctac tgattaaatt tgaatctcgg      1680
     aggatttaaa acaatatttt agtattgaat tcgtcttacc gaaatattcg tgagcacaaa      1740
     taacacacag ttaataacaa gtagattgtg caacaataat tattcatttc tcaattgtaa      1800
     tttaatttag tccccctaat tttatttatg catattttat ttattttata ttacatatat      1860
     acctagaaga atacctagat tgagaatgta attgaagaaa actatattat ttgcggataa      1920
     agccagatta attattacct attattataa acgtttgact actacataaa gtaacaatta      1980
     cattaatcga agaatgaact tatatatttt tgtttaaaaa taaaaataaa taaataaaat      2040
     aagcaaaatc attgatgtat gttggtgtaa gcatttttta aaaacagttt ttgaattttt      2100
     agcctcatat tttttatgat ttttttttta acctgtgatt aatagtttga ttattataga      2160
     taaatagata ctacaatcaa tctacagtgc tacttgaaca tatattttgt agatgaaaat      2220
     ggccagcata agggtctgtg acatctaatg aattctaaaa aatattaatg aaaattaatg      2280
     cagtaaaatt acttaaataa tatcaatgaa gtattaatga aatgttgggt acttgctgat      2340
     ttgtgtacct tttggcgttt aatcaaccct tatacttaac tttttaaact gtaagttttt      2400
     gttaaagag                                                              2409
//
ID   Helitron-2N2_DSuz repbase;    DNA;    INV; 795 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 27.01, Created)
DT   14-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-795
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 148-148 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
SQ   Sequence 795 BP; 234 A; 194 C; 147 G; 220 T; 0 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtcggaaagt atgtaacagg        60
     cagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccggatg aacgctgaga tctcggaaac       180
     tatgagagct aggctattga gatttggcgt gcagattcct gagcttctta cgcagcgcaa       240
     gtttgtttca gtagactgcc acgcccactc taacgcccac aaaccgccca aaactgtggc       300
     tcctacagtt ttgatgctag aataaaaatt ttaactgaaa tgtaatgttc tcatcaatac       360
     ctatcgattg acctaaaaaa aagtttgcca cgcccacttt aacgcccaca aaccgcgaaa       420
     acctgtgacg cccacaattt ttatgctaga taaaaaattt taactgaaat gtattcgtct       480
     cgtcattacc tatcgattga ctcaaaaaaa agtttgccac gcccacttta acgcccacaa       540
     accgcaaaaa cctgtgacgc ccacaatttt catgctagat aaaaaatttt aactgaaatg       600
     tattggtctc gtcgatacct atcgattgat ccaaaaaaaa atttgccacg cccactctaa       660
     cgcccataac gcttaaatct gtataccgcc ggtaggtggc gcattttaat ctcgctttgc       720
     tgcttgcata tctccattta gctgagtaac gggtatctga tagtcgaggt actcgactat       780
     agcgttcttc cttgt                                                        795
//
ID   Helitron-2N2_RPr repbase;    DNA;    INV; 901 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-901
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3237-3237 (2015).
XX
DR   [1] (Consensus)
XX
CC   5'-termini are not determined.
XX
SQ   Sequence 901 BP; 282 A; 139 C; 173 G; 307 T; 0 other;
     gttaaatatt aaattggaaa taaagttaat aatcatggtc aactgagccg aaaattgccg        60
     acaaaaaccg atcgcattcg gcttgttaga gagaaaagag agagaagtga tattaaaaag       120
     tcacggctaa ggctggttgg gttaaggttc ctagaatctc cagtttttcc tagaatttgc       180
     gttctctaac ccatcggtcc ttgatggcat aggtttggac tgactttact gctctgtagt       240
     gagtttatcc gctatatctc aggaacggaa aatcgcagaa acttcaaatt tgatatttcg       300
     ttcaagtgcc accagaggaa gcgacaataa atttttggtc aaaataggtc caccggaagt       360
     accactttac tgaatagatt tttcactttt ttaacttttt ctcaaaaacc gcttcttgga       420
     ttttcttcaa acttggtata attatagctc acaaatagtt ctacaacttt tataggaaac       480
     atttttctgg aatacttcga ttaagggcac ttttggggga gggggtgggt gggtcagtcc       540
     ggtagaatgc cagttcgctg taatatatgg acttactctt tatggtaggc tactctttac       600
     tgaacaaata ttttgtagat gaaaatggcc agcataaggg tctgtgacat ctaataaatt       660
     ctaaacaaaa ttaatgaaaa tttaatgcag taaaattact taaatatcaa ttgtaataaa       720
     atgtcaatta acgaacgttt ctatataact gaaattacga actgaagtat gaatgaaatg       780
     ttgggtactt gctgatttgt gtaccttttg tcgtttaatc aacccttata cttaactttt       840
     taaactgtaa gtttttgtta aggagatttt tgtacctttt ggatagttct atttatagtt       900
     t                                                                       901
//
ID   Helitron-2N3_DSuz repbase;    DNA;    INV; 1124 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1124
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 149-149 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
SQ   Sequence 1124 BP; 355 A; 228 C; 222 G; 319 T; 0 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtcggaaagt atgtaacagg        60
     cagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccggatg aacgctgaga tctcggaaac       180
     tatgagagct aggctattga gatttggcgt acagattcct gagcttctta cgcagcgcaa       240
     gtttgtttca gtagactgcc acgcccactc taacgcccac aaaccgccct aaaatgtaac       300
     tcctacagtt ttgatgctag atagaaaatt ttaactgaaa tgtattagtc ttgtcaatac       360
     ctatcgattg accaaaaaaa aattttgcta cgcccactct aacgcccaca aacctccaaa       420
     gaaaaaagct atgacgtcag agccagacaa tgcgaaatgt ttttacgcgt gtatgtgtgt       480
     gtatgtaaat agttgccggc cgaacttagc ggcaaagaaa aaagccctgc cggcgctcag       540
     agagagcaaa gtgcgcggct aacttattct attgaataat gaacccttta tccatttgtc       600
     ccattgacgg gcaaaaacct ttaaagatct gtacatcttt atttatctct ttcaaagaat       660
     atgaattagc ttaataaata cctatagatt gtcccaaaaa aacttttccg ttttcagtcc       720
     aatgctctca aaccaaagta gttaggacaa gccttgacac tagagccaga aaacgacata       780
     catacatacg tatgtgttta tgcatgtgtg tggacgtaaa aaattgcaat ctaatatccg       840
     cggcaaatag aattctttca aacgaagcta ttcaaccaaa tattttgaaa tacagaatgt       900
     gccttaaaat tgtgtatgtt tagcaagcat acataaatat aaatgttttt tgtctatttt       960
     atgtgttgct ttctcattct tggcgctggc tgaaacaaaa gcagagccga gaaatgagag      1020
     caagggagag agaacaaagt gcgcggctaa cttattttaa agtttgttat ctgagtaacg      1080
     ggtatctgat agtcgaggta ctcgactata gcgttcttcc ttgt                       1124
//
ID   Helitron-2N3_RPr repbase;    DNA;    INV; 7548 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-7548
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3238-3238 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined. 88% identical to the consensus.
XX
SQ   Sequence 7548 BP; 2988 A; 1284 C; 1138 G; 2138 T; 0 other;
     ttttgaaaat gccgtttttg cccatttttg gcatcgtttt tctcaataac taattaatct        60
     gcatagttgc aaaaaaaatc acttataaag gaggatttgc ccaatatttt aaagaaaatt       120
     tgggaatttt atcttttata gaaaaagaga aaaaaaattg tcaaagttgg gtgtttttca       180
     acgttacgct ttttcgtgca gttttgacga tcaaccctta tacaactgtc ctaccggaca       240
     gttttaatac aacttataag caatataaat aattattcca gaaggaagaa agaatattgc       300
     caatttcagt cattgtatat ttactgtttg tatatttcta ttctttctaa gacgtccata       360
     cgtcttcctt tccttcctga tgtaacagcg tcattgtgtt cttgatactg tccggttggt       420
     gactgtgttt gatgaggtgg tttgcgtaag ttgagtctgt tttgttgtat ttgtacgaac       480
     ggatgttttc ttggtatcag tctttgattt ttctcccgct ttaaccaata taagtactac       540
     ctcatatagg acagactagt ttttaaagtc ataagggttt gttagtttcg gtttgttcac       600
     ttattctatt tcctaaacgc ggttttgagg cccagatatt gaacacctaa cgatcgacgc       660
     agaaatggca gtaacattac tatcacatgt tgaagaagta tacgcaagga cacttagcga       720
     ctgacattat caaaaatata cataaaaaac tgaagacaca gaacaaaaca gataatcagg       780
     aactacgcac agcaaataac ctaagacaga aactaaaaaa gaataatctc atattaactt       840
     aagcggacaa aggcaactct acggtaattt taacacactc agactatgtt aacaaaacga       900
     cttcataaac aaaaacggac aaacccaact taagaacgac ccgacaacac gagtccaaca       960
     gcaaatcaag acagctataa aaacagccac ctttatcgta cctaaaaatg gagtactcaa      1020
     atacgtatcc atgaatccca cagcacctaa cctgagaaca gttcccaaag tttacatata      1080
     aaaaatacac aacacattat ccacttattg aaagacacag aactaacatt ctcatcacgc      1140
     ctcatatccc ttgacattac aaacctttac acttctaccc tgtcagagac tctttaaata      1200
     ttataaaaca gaaactaaaa gacgaaaaca cactacagta cattgaccaa ctaatagctc      1260
     taaccgaaac cgaaactacc ttcaaacaaa attactttag atttaacaat aacttttacc      1320
     ttgctaatga caaattaagg aatgggacac tccccatcgg caatattgtc tgaaatattt      1380
     atgcaacatg aacgtgtgtt ccacaattga agaaagaatt cggtgcaaca ttttacgcac      1440
     gttatgtaga ccatttaatg tagaccactt actactcata ctcaaactag atgtagacat      1500
     atgtaaatta ttttcttaac taaacagaca tcgccctaac ataaatttca cacatgaata      1560
     tgagaacgac aaaactctta acttcctgga tatcacactt actataagag acaacaactt      1620
     agaattcgga atattcagaa agcccacgtc cactgacact attatacaca acagttccta      1680
     ccatcctatt caacataaac tagtcgctct cagacacctg acagattgaa aactaaacct      1740
     cttgtactga ccaactatga gtgagaactc aacatcattc gcacaatagc cacaaataac      1800
     agttatacca ccaacattat taataaatta ctaagtacaa acaaacattg cccaaaccaa      1860
     ggccaaaaca ataacccacc caacatattc gccactttta cttacatcgg aaacgagaca      1920
     tacaaactat gtaacctttc caagaaacta ggcctcaaaa ccgcgcttag gaccaacaac      1980
     aaactgggaa acagtgcaca aatcgaaact aacaaccctt atgacaacag cggtatttac      2040
     aaactagttt gtccagacta tgatagtacc tatactgacc agagcgggag aaaaatccaa      2100
     gacagataca aagaacacat ccgctcgtac aaacacaact tacgcaaacc tccttatcaa      2160
     acacagtcat caactggaca gtatcaacaa cacaatgact ctgttacatt caggaaaaaa      2220
     ggaagactta cggacatctt agaaatatac aatcagaaat ccattcacca aaacattatg      2280
     aaagaccaaa ttaactataa ctctgataca ctctttaaag tcattccgta ccaaacacac      2340
     cgacacagct gagcaaacct cacaaaaaaa agcatgaata taaccagcgt gtagcatgtt      2400
     ctctactatt aaaagtgttc tatttaagat tttatttatt tacgcatcat ttgttaaacg      2460
     attagaatca catattcatc aatatttaat ttaacaacaa ttatttccca gtacaaatga      2520
     actaggtatg attcagtttt tcctgcttac gttctcacaa cttccatttt acaattctaa      2580
     aacattacct acgcacaaaa catgcatatc ccttaaatac ctactaggat tctttaattt      2640
     tatttcagca tttgtacaaa aaaagacgtt cacatagaag gatttgtacc aactacttcc      2700
     gtcatgttca aggaccggaa attatttatt tccggcatat cgaaaatctg cacgattgta      2760
     atacttccac ataggaaggg tgagacaaag taaaaaaact tgaaaacgtt agagtaatgt      2820
     aaccgacata aagtgctcct gtcgacaatc acttgtaact caagcattgg atatttatgt      2880
     attaatttaa ataattacgg ttggacaaat ttatctgcta acaactatta cataacttga      2940
     ctgactcaca caaaatacca tctcaccaat ttgggttcag gtcaaagcat ttatcaataa      3000
     catcaagtta agcgagtaac tgaacatatc gtgaataaag tagaaaacag aaagtacaca      3060
     gcagctatat ttcttgattt agctgatgta tttgacaatt ttgacacgct ggactgcttt      3120
     acaaaattag gtagacttac gctcttaatt acattattca aatcatacga tcctttttac      3180
     aagacctaac tttctgggta agattcaata acatttacag tactcgacga caattctcgc      3240
     gagcctgcct cagggagcaa taagtcctat actcttcaat ttctactcta tggacagacc      3300
     taaacctagt ataacgatgt tagctactta cgacacaatg tcattaacaa aagacgacaa      3360
     cacagacatt aacaaaacca tcaccgactt acagacatca actaatctta taacaaactg      3420
     gttcaaaaaa aaaggaaatt gaatttaaac ctatcgaaaa cgtaagcaaa aatcttccct      3480
     ctaagaaggt tacgaaatga agatctaaga tccctataaa caaccgagaa aagatcaagg      3540
     agtgtgctag ctcgacgtaa ctctggagtc gacacatcaa cacaaaactg caacaatcat      3600
     aacccaactg agacagttat agccacttat taacataaaa acactaacaa taacgtacaa      3660
     gacactacta aaacctattc tgacataccc ctgtcaaatt tggataacag ctagtaaacg      3720
     actgaccaaa caactaaaga cattacaaaa aataattcac tgaacgtctc ttcgttcacc      3780
     agaaacacac aaattcatgc aaaggatttc gtgttgtatt aaataaaaaa gtattctaac      3840
     aatataactg gtatttttac aaccattaca cttgaaagaa actgatataa tttggtaact      3900
     tggttagcag tgattgattg ttgttagtag ttacttcttc agtaaagttt aaagtggatg      3960
     ccattgataa gatttctcaa tagaacttca attccaaaaa caatttagaa atccaaaaga      4020
     atgctaattt tgaacttata gtcgattaaa aagaaaatca aagaatacat tttagaaaaa      4080
     caatttgggg aaacaaaaat gctaattttg aacttatagt cgattaaaaa gaaaagatta      4140
     aagaatacat caaaaaggtt tagaaatcaa tttggggaaa caatgaagct aattttgaac      4200
     ttatagtcga ttaaaaagaa aagattaaag aatacatcaa aaaggtttag aaaacaattt      4260
     ggggaaacaa taatgctaat tttgaactta tagtcgatta aaaagaaaag attaaagaat      4320
     acattaaaaa ggcttagaaa acaatttggg gaaacaagaa tgctaatttt gaacttatag      4380
     tcgattaaaa agaaaagata aagaatacat caaaaaggct tagaaaacaa tttgggaaaa      4440
     caagaacgct aatttgaact tatagtcgat taaaaagaaa agtaaagaat acattaaaaa      4500
     ggcttagaaa acaatttggg gaaacaagaa tgctaatttt gaacttatag tcgattaaaa      4560
     agaaaagatt aaagaataca ttaaaaaggc ttagaaaaca atttggggaa acaagaatgc      4620
     taattttgaa cttatagtcg attaaaaaga aaagattaaa gaatacatca aaaaggctta      4680
     gaaaacaatt tggggaaaca ataacgctaa tttagaactt atagtcgatt aaaaagaaaa      4740
     gattaaagaa tacatcaaaa aggtttagaa aacaatttgg ggaaacaaga acgctaattt      4800
     tgaacttata gtcgattaaa aagaaaagat taaagaatac attaaaaagg tttagaaaac      4860
     aatttgggga aacaaaatgc taatttgaac ttatagtcga ttaaaaagaa aagattaaag      4920
     aatacatcaa aaaggtttag aaaacaattt ggggaaacaa gaatgctaat tttgaactta      4980
     tagtcgatta aaaagaaaag attaaagaat acatcaaaaa ggtttagaaa acaatttggg      5040
     gaaacaagaa tgctaatttt gaacttatag tcgattaaaa agaaaagatt aaagaataca      5100
     ttaaaaaggt ttagaaatca attcaaaaaa caattgggga aacaaaaatg ctaattttga      5160
     acttatagtc gattaaaaag aaaagattaa agaatacatc aaaaaggcct tagaaaacaa      5220
     tttggggaaa caaaaatgct aattttgaac ttatagtcga ttaaaaagaa aagattaaag      5280
     aatacatcaa aaagtttaga aaacaatttg gggaaacaaa gaatgctaat tttgaattat      5340
     agtcgattaa aagaaaagat taaagaatac attacaaaaa acaatttggg gaaacaaaga      5400
     atgctaattt tgaacttata gtcgattaaa aagaaaagat taaagaatac atcaaaaagg      5460
     tttagaaatc aattccaaaa aacaatttgg ggaaaccaag aatgctaatt ttgaacttat      5520
     agtcgattaa aaagaaagat taaagaatac attaaaaagg ttagaaatca attccaaaaa      5580
     acaatttggg gaaacaaaaa tgctaatttt gaattatagt cgattaaaaa gaaaagatta      5640
     aagaatacat caaaggttta gaaatcaatt ccaaaaaaca atttggggaa acaagaagct      5700
     aattttgaac ttatagtcga ttaaaaagaa aagattaaag aatacatcaa aaaggtttag      5760
     aaatcaattt aaatactttt tgtagtattc aaaattaaag aattaaccaa cactgaacgt      5820
     agtcaagacg tagcattaat attaatttgt aagtaataat taaatgataa catgctattt      5880
     tcatgcaaga ataataaaaa tataattgaa atttaaaata agtaattgat aataaagtct      5940
     taccttgttt aaagaatatc caagtccatc agcatctcag tagatcacca gtccaatagc      6000
     acttgacact tgacactatt taaaataatt cacaacacta ttcgcactaa aactgtatat      6060
     cacgcactaa gtataactta aacacaattt ataaaataga acttcacttt aacacgcact      6120
     aatattcact taaaaaatca cgttaataaa gagacacgac taacgagtta aagatggccg      6180
     ccggtaactg gccaggcaga tcagctggta aaggaaggtt atctaagcag agtgaccaac      6240
     ttttttttca tttatgaatg aaataaaatc cctaattcgc taattacaca ttcactaatt      6300
     acattttatt tttgtagatt atgaatgaaa ataaatgaaa aaaaagttgg tcactctgct      6360
     tagataacct tcatttacca gctgatctcc tggccagtta ccggcggcaa ttttgaactc      6420
     gttactggtg tctctttgtt aacgtgactt tttaaagtga atattagtga gtgttaaagt      6480
     gaagttctat tttataaatt gtgtttaagt tatacttagt gcgtgatatt gagttttagt      6540
     gcgaatagtg ttgtgaatta gtgtaacaag gtcaagtgct attgggctgg tgatctactg      6600
     agatgctgat gaacttttat attctttaaa cactttaaag acgttcagta aattagtttt      6660
     tgtaatgtaa cgttttcagt tttttttttt tttactttgt ctcacccttc caatgtggaa      6720
     gtattacaat cgtgcagatt ttcgatatgc cggaaataaa taatttccgg tccttgaaca      6780
     tgacggaagt agttggtaca aatccttcta tgtgaacgtc tttttttttt gtacaaatgc      6840
     tgaaataaaa ttaaagaatc ctagcaggta tttaagggat atgcatgttt tgtgcgtaga      6900
     taatgtttta gaattgtaaa atggaagttg tgagaacgta agcgggttca cgtgtcgata      6960
     atttgaaacg attgctatac ttccccttaa caagtgtaag agcagatcgc cgctttaatg      7020
     ttacgtaggg gagccctaac cctatcatcc taccaaattt tatcaaaatc gggccaagat      7080
     ttacagagta attagtaata ataattttgg agggggcctt acataaaggg ggctaactcc      7140
     tctcccattc gatgtacagc gtcgagaccc ccaaaaggca catctacata aaattccgaa      7200
     tcgaatgaca cctcattcat gaaaatcggt tcacgcgttt aggcgctacg ttgtttacaa      7260
     aaaaggtaac aacaacaaga agaacaagaa caagaacatt ttttgaaaaa gccgtttttg      7320
     ctcattttcg gcaacttttt tctcgaaacc tattagatct gggttgttgc aaaaaaatta      7380
     cagttataaa ggaggatttg ccctatattt taaagaaaat ttgggaattt tatcttttat      7440
     agaaaaagag aaaaaaattg tcaaagttgg gtgtttttca acgttacgct ttttcgtgca      7500
     gtttttgatg atcaaccctt atacaactgt cctaccggac agttttaa                   7548
//
ID   Helitron-2N_DW repbase;    DNA;    INV; 827 BP.
XX
AC   .
XX
DT   10-SEP-2011 (Rel. 17.09, Created)
DT   10-SEP-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Helitron-like DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-2N_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-827
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1739-1739 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 827 BP; 234 A; 169 C; 163 G; 259 T; 2 other;
     tttttatacc cttgcaaaaa gggtatatta attttggtca gaagtgtgca acgcatagaa        60
     ggaagcattt ccgaccatat aaagtatata tattcttgat cagcacgacg agacgagttc       120
     aaatagccat gtccgtccgt ccgtccgtcc gtccgtccgt ccgtccgtcc gtccgtccgt       180
     ctggatcaac gcaaactcct cctagaccgt aagagctaca gagctgaaat tttgcatgta       240
     ggcttgtata tactgcaggc gttgtatatc tcggattcag ccggatcgga tcactatatc       300
     atatagctcc catacaaatg gcaaagtcac gaacagtgac ttttctcaat aacttcgtta       360
     ttttctgagc tattgtcgtg aaatttaata ttggtgagtt aattacacat ataaacgact       420
     gtgccaaatt tgatcaagat cgggtgacta tatcatatag ctcccatagg aacgatcttt       480
     cgaaaacagt gacttttgtc aataacttcg ttacttttga cgcgattgct ttcaaattaa       540
     acatttgtta gtttaatata tctgttaatg actgtgccga atttgataaa gatcgggtta       600
     ctatatcata tagctcccat aggaacgatc ggtggaaaac agtgactttg atcaatatct       660
     tcgttatttc ctatgctaag attgtaggcc gttctttcgc aaacattagc ctttttagnt       720
     naaacgtttt tccactttga tggctatagg taaggaaaga gttaccaaaa aagttgcaag       780
     ggtatacaaa ctttgacgcg gtcgaagtta gccccggccc tctggtt                     827
//
ID   Helitron-2_AAe repbase;    DNA;    INV; 6227 BP.
XX
AC   .
XX
DT   31-DEC-2010 (Rel. 16.01, Created)
DT   31-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   Helitron-like sequence from Aedes aegypti: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6227
RA   Jurka J.;
RT   "Helitrons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (30-DEC-2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           922..5532
FT                 /product="Helitron-2_AAe_1p"
FT                 /translation="MVTVLPRELEDDYAFNVCIKKHLIHKSNYLSGFVKKS
FT                 VVKAWLEYLITTPLYRREGIIFNQERLRAFINGPQSATSGGEEMIQLELID
FT                 VNNDAELLAGQQQTVMWNEDKCLELAPAQNRQPVSIVYDDNAEELSFPDIY
FT                 LGYPRTFRAGTRVTPYMKATSELRRSDRRGTKPNHLLYMAMKILRLRVAEG
FT                 LQNVFKNIGTVDITRGQISDRRFVDELMERNLSFMKSIPNSVQYWYLRKQD
FT                 LFAMIRQLGKPTMFLTLSASETQWPLLLKQLHKLSSEYNGIDLSDPLQELN
FT                 AQQRATLVNDDAVTCCLYFNKLVDVLMGILSSPRFSPFGKHYVVDFFKRIE
FT                 FQHRGSPHAHIMLWLANDPNETVSEHMPATMELIRKVCSISAIHLSETIDK
FT                 QIHSHTFTCYKRNEKRCRFNIPYWPMNEERTLVPLSADDSRRDRLRKRASE
FT                 MRNILETKAFDTLEEFLADCRCTYEYYLDVLRSSIQRPTIFLKRSMNEMWT
FT                 NPFNPWIAEKLRSNMDLQFILDVYSCACYLAGYVNKSNRGVSGLHRELINL
FT                 QQQYPDQDYAALLKKVSLKMLNSVEMCAQEAAWVLLRLPMSEASRKVEFVP
FT                 TMWPQERVRSRKQFKQMDEEEIDEDSTDIWTKNIIQKYEEREDMDDICLAD
FT                 FVAWYTPCRGANSYKRRSVPRILKWRGYSMNELEEYKRESVLLFLPFRNEH
FT                 CDILDGTKFLQLYEINEADILRKRKEYDRDLNLEQTVEEYLRTCENEVDGE
FT                 HENAATKKHDEFVRTISMIPNDDDIEYLPTGALNAVIRKRTNVMSKEDYCA
FT                 MVRATNVEQRDLILHVIDGLHSYNEINKPLQTFFTGPAGCGKTFTLRILME
FT                 TINRFSQAHNAQKNAYVACASTGKAAVAIGGTTVHSAFRITMSRQKNSKLS
FT                 FEMLQMYRNAFSNIKAVIIDEVSMIGADVLNTIHTRLQDITGNYDEPFGGI
FT                 TIIFCGDLRQLPPVNARAVYKPTGNSFHGAVLWQVLNFFPLVKVMRQSDVE
FT                 FSSILTKIGNGQKMTADETKLIESRFRTVEWCKQNVPGAIRLYHRNMDVEQ
FT                 YNNEALTDQDTLECTADDVFAGYRDAAQLASSRIKLYKMSVVETGGLPYLL
FT                 RLSVGMPYMITTNVDVEDGIVNGAIGELKYIEKDEDDCIVKLWFKFENEVI
FT                 GAALRIKSRPAVYSRPGILQTDWTPISKRSASIKLSGIIKCKRIQFPVVSA
FT                 CALTIHKSQGGTFPEVVYDYDKSQDQQLVYVGLSRVTSLQGLFLTNSTNSF
FT                 KFHHAKGSNSPKMVDLRNELQRLGNHRLRTLGDELREILDHSGPACTLMSI
FT                 NVQSLNAHAMDIATDQILTSVEFLALSETWLDDHSSVDIAGYSCINQFKRP
FT                 GVRAGGVAIYQKDTAFNVAVPHTIQKISEEYDAMLGVADQVGDICAASIMV
FT                 MDIKVLLITVYISPGTTVQDTKMFLIRNLFNYVKQDTPIVVTGDFNIDVSK
FT                 QENIKFVDFMIKHFNLKLANRLNEATTLGGSCIDLTFIKNISVECSRYCSY
FT                 FSYHRPILSILTIEAPELSNI"
XX
SQ   Sequence 6227 BP; 1870 A; 1315 C; 1377 G; 1664 T; 1 other;
     tttgattgaa gatgtgctca gatttcctaa gattaactca catttactca aaagtgctgc        60
     ctgataccaa cgaaaaagtt taaacaattg cctgatgtaa gtggtctcag aggtgaaaac       120
     atcgaagtct gacagaaaac aaggatgaaa atattgaatt ccaacaaaaa cattaacgca       180
     ggattgctca gagttactct cgattgttca ctttcttgcc ccttgtgttg attattgaaa       240
     attaaatcat ttggaaattt tagggattca cattttaact gactattgtt taacattgca       300
     gaaattgttc cacctcattc tatggagaat gagtcttttc aaactcctga tcttattagc       360
     cagcatgagt agtcagtaaa tctaaaatta tcaatattat attttgaaca gtgatcgata       420
     tgacagaggt tggtccatct agccctacat cagatgaacc taatttggaa agagccgatc       480
     gagaatattg caaacgattc atcgataatc aattcgggtt tgcatgcagt gtttgcgata       540
     ggctttggtt tctgaacgat ctgaaaccaa tcaccgaagc tgcaggtaaa gtgttgctgg       600
     atgctggtca ttttgattct gttacgggat ttaaagtatg ccaaacgtgt cgaagtagct       660
     tgcaacggaa ttctgtgccg aatctgtcta catcgaacgg ctttaagtat ccaccttttc       720
     cgccgggtct gccaccattg gacccaatca ctgagaggct gatctcacca cgtttgcctt       780
     tcatgcaaat tcgtcgcctg cgccgcgcgc aaggtctgtt aatacatcgt aatattgtga       840
     gtttgtttaa cattatccga aattttaggc agttacacga tcatcggtca agtgatcaat       900
     gtcccagtag atgtagatga gatggttacg gtgcttcctc gtgagttaga agatgattac       960
     gcgtttaatg tgtgcatcaa aaagcactta atacataaat caaattactt gtctggattc      1020
     gtcaaaaagt ctgttgttaa agcttggctt gaatatttaa taactacccc attgtatcgt      1080
     cgggagggta tcattttcaa tcaggagcga ttgagagctt tcatcaatgg gcctcaatct      1140
     gccacgtcgg gaggggagga aatgatccag ctagagctca ttgatgttaa caatgatgca      1200
     gaattgctcg ctggtcaaca acaaacggtt atgtggaatg aggataagtg tctggagctt      1260
     gccccagccc aaaaccggca accagtctca attgtctacg atgacaacgc cgaggagctt      1320
     tcttttccgg atatttatct tggatatccg aggactttca gagctggcac tcgtgtgacg      1380
     ccgtacatga aagccactag tgaactgcga cgaagtgaca ggcgtggaac aaagccaaac      1440
     cacttgttgt atatggctat gaaaattcta agacttcgag tggcggaggg attgcagaac      1500
     gtcttcaaga acataggaac agtggatata acacgaggcc agatcagcga ccgaagattc      1560
     gtggatgaac taatggaacg aaacctatcg ttcatgaagt caatcccaaa ctcggtccag      1620
     tattggtatc taaggaagca ggaccttttc gccatgatac ggcagctggg caagccaaca      1680
     atgttcctga cgttaagtgc cagtgaaacg caatggccat tattgttgaa gcaactacac      1740
     aagctctcca gtgagtataa cggcatcgat ttgtctgatc cgttgcaaga gttgaacgcc      1800
     caacaacgtg caacgctggt caatgacgat gctgttacgt gttgcttata cttcaacaaa      1860
     ctcgttgatg tgctgatggg cattctttct tcgccgagat tcagtccatt cggaaagcac      1920
     tatgttgttg acttcttcaa gcgcatcgag tttcaacacc gtggaagtcc acatgcccac      1980
     attatgcttt ggttggcaaa tgatcctaat gaaacggttt ccgagcatat gcctgctaca      2040
     atggagctta tcaggaaagt ttgctccatt agcgcaattc atttatcgga aacgatcgat      2100
     aagcagattc atagccatac attcacctgc tataaacgga atgaaaagcg ttgtcggttt      2160
     aatattccat actggccaat gaacgaggag cgaacattgg tacctctctc cgccgacgac      2220
     agtcgacgtg atcgattgag gaaacgtgcc tcggaaatgc ggaacatttt agaaaccaag      2280
     gcatttgaca cgctagagga gtttcttgcc gattgtaggt gcacttacga gtactatctc      2340
     gatgtacttc gttcctcgat ccagcgacca acgatcttct taaaacgatc gatgaatgag      2400
     atgtggacga atcctttcaa cccgtggatc gcagagaagc ttcgttccaa catggatctg      2460
     cagttcattc ttgacgtgta ctcatgtgca tgttatttgg ctggatacgt gaacaagtcg      2520
     aaccgaggcg tcagcggatt acatcgtgag ctcatcaatt tgcagcagca ataccccgac      2580
     caggactatg cagctttgtt gaagaaggtc agcttgaaga tgctgaattc tgtagagatg      2640
     tgtgcccaag aagctgcatg ggtacttctt cgactaccaa tgtcggaagc cagcaggaaa      2700
     gtggaatttg tgccaaccat gtggcctcaa gaacgcgttc gatctcggaa gcagttcaaa      2760
     cagatggacg aagaagaaat tgatgaggat tcgaccgaca tatggacaaa gaacatcatc      2820
     cagaagtacg aagagcgtga agatatggat gatatttgtt tagctgattt tgtagcttgg      2880
     tatactccat gcagaggtgc caatagctac aaacgccgga gcgtaccacg aatactaaag      2940
     tggcgaggtt atagtatgaa cgagttagaa gagtacaagc gtgaatcggt actcttattt      3000
     ctaccgttca gaaatgaaca ttgtgatatt ctggatggta caaagtttct tcagctgtat      3060
     gaaataaatg aagcggacat cttgaggaaa cggaaggaat atgatcgcga tctcaatttg      3120
     gagcagactg tcgaggagta ccttcgtact tgtgagaacg aagtagatgg agagcacgag      3180
     aatgctgcca ccaagaagca tgacgagttt gttcgaacga tttccatgat tccaaacgat      3240
     gatgacatcg aatatttgcc aacaggagcg ctaaacgcag tcatcaggaa gcgcaccaac      3300
     gtcatgtcaa aagaggatta ctgcgctatg gtacgggcta ccaatgtgga acagcgtgac      3360
     ttgatcttgc atgtaatcga tggactacat agttataacg agatcaataa gccattgcaa      3420
     actttcttca caggtcctgc aggatgcggc aaaactttta cgctgcgcat cctgatggag      3480
     acaatcaacc gcttcagtca ggctcacaac gctcaaaaga acgcgtatgt tgcatgtgct      3540
     tccacaggaa aggcagctgt tgctattgga ggaacaacag tgcactctgc tttccggatc      3600
     acaatgtcaa gacaaaagaa ctcgaagctt agttttgaaa tgcttcagat gtaccggaat      3660
     gctttttcaa atataaaagc tgttatcatc gacgaggtca gcatgatcgg agcggatgtg      3720
     ctgaatacta tacatacgcg tctgcaagat attaccggaa attatgacga accgttcggt      3780
     ggaatcacca tcattttctg cggtgactta cggcaactac cacccgtaaa tgcaagagcc      3840
     gtttacaagc caactggaaa ctctttccat ggtgctgttc tttggcaagt gcttaatttc      3900
     ttcccgcttg tcaaagttat gagacagtct gatgttgaat tttccagtat acttaccaag      3960
     attggtaacg gccagaaaat gactgccgat gaaactaaat tgatcgaaag tcgattccgt      4020
     actgtcgaat ggtgcaagca gaatgtgcca ggagcaataa gactgtacca tcggaacatg      4080
     gatgtcgaac agtacaataa cgaggcgcta actgatcagg atacactgga gtgtaccgcc      4140
     gatgacgtat ttgcgggata tagggatgcc gcccagttgg caagttctcg catcaagctc      4200
     tacaagatga gcgtcgttga aaccggtgga ttaccgtatt tgctacgact gtccgttggt      4260
     atgccataca tgatcactac caacgttgat gttgaagatg gcatagtgaa tggtgcaatc      4320
     ggtgagctga agtacattga aaaggatgaa gacgactgca tcgtgaaact ctggttcaaa      4380
     tttgagaatg aggtgattgg tgctgcattg agaatcaaat cgaggccagc tgtttactcg      4440
     agacccggta ttctgcagac cgattggaca cccatctcaa aacgatcggc tagtatcaaa      4500
     ctgagtggca taatcaaatg caaacgcatt cagtttccgg tggttagtgc ctgtgctttg      4560
     actattcata agtcgcaagg tggcactttc cccgaggtcg tgtacgacta tgacaaaagc      4620
     caggatcagc aattggtata tgttggtttg tcacgggtta cttcactgca aggactattt      4680
     ttgacaaact ctaccaattc tttcaagttc catcacgcca aaggcagcaa ttctcccaag      4740
     atggttgact tgaggaacga gctgcagcgc ttgggcaatc atcgattacg gacgcttgga      4800
     gacgaactgc gtgaaatact ggatcacagc ggccctgcct gcacattgat gagtatcaat      4860
     gtacagagcc taaatgctca tgcaatggat attgctacag accaaattct gaccagtgta      4920
     gaattccttg cacttagtga gacttggcta gatgatcact catccgtcga cattgctggc      4980
     tacagctgca tcaaccagtt caaacgccca ggcgtgagag ctggaggtgt ggcgatttac      5040
     cagaaggata cggccttcaa cgtagctgtt cctcacacaa ttcaaaagat tagtgaggag      5100
     tatgatgcaa tgcttggcgt agcagatcag gttggagaca tttgtgcggc atcgattatg      5160
     gttatggaca ttaaagtact tctaataaca gtgtacattt ctccaggtac tactgtgcaa      5220
     gatacgaaaa tgttcctgat ccgtaattta ttcaattatg taaaacaaga tactcctatt      5280
     gtagtcaccg gtgactttaa tattgacgtt tccaaacaag aaaatattaa atttgtcgat      5340
     ttcatgataa aacatttcaa tttaaagttg gcaaaccgtc taaatgaagc gaccacatta      5400
     ggtggttctt gtattgattt aacgtttatt aaaaatataa gtgtagagtg tagtcgatat      5460
     tgttcatact tttcttacca tagaccgatc ctatcgattc taacgatcga agcacccgag      5520
     ctatctaaca tttaatctac tggagaagtt tgacgaacta cagctggagc caggaccgga      5580
     accgatcatc caaccaaaca acgcaagcaa gcgacgacga aacaaacaaa ctcaatcatc      5640
     tggaacatca ctggatcatt cctggaacac caaacactgg ttctcggaac cacagaacga      5700
     caaacggtcc ttttcaggat caccaaaatg aacgacaaac ggtccttttc aggaccacca      5760
     aaatgagtcc ataaagagtc aattactgaa aaatttcatc cgatcaataa aaatacaaga      5820
     ctagtacact tgcaaattca tacacatgac aaattattaa taatccttca ctacacttat      5880
     actcgaactt cactctcatt caaacatcat aatcaactca aatccttttt aaagtatttt      5940
     actttgaaat ccgaaactct gaaaaagctt ccaaaccaaa tgacagatcc cccttaaacc      6000
     ataacgtaat tgaatactca caatcacagc acctatcatc tatcataaaa cattatattt      6060
     atcatctgca aaaagctacc gcactgttgt aagagtctga cccataattg atcgaagttg      6120
     tgtccatagt agttctacgt gaaccccgcg gtaatgtaac agacattacc caccccaatt      6180
     tttttgatct gtattwaggt tcagcgagaa ttctacagtt tggaaaa                    6227
//
ID   Helitron-2_BTa repbase;    DNA;    INV; 5801 BP.
XX
AC   .
XX
DT   08-MAR-2018 (Rel. 23.03, Created)
DT   08-MAR-2018 (Rel. 23.03, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, a sample sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5801
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(3), 254-254 (2018).
XX
DR   [1] (Consensus)
XX
CC   5'-end is indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..4868
FT                 /product="Helitron-2_BTa_1p"
FT                 /translation="MAEDGENILIGNVLSPHNIFHVPADGNCLFSCLSMCI
FT                 YGDILFNNQMRKIIVDHVISAWQRLHSYTFTSTGETYTSPNEYASEMSKDG
FT                 IYGTTCELIAASEIFDHQFQIFRNGNIIAQFGALNDSFSRLKLSGEISNGH
FT                 FDVLIPVSRGLSISNFTFSENLVPSSKLKRVYTKRKSNLAQKNIRKKNKNR
FT                 ISILRSKKKLSSNNWTNKLNSGFMYDIRIDYQNDSSVALGQMSLVCKYCNA
FT                 KRWKDEASGLCCNNGRTNLPKLPTPPEPLNSLLTGHHSLSKHFLNNTRKYN
FT                 GCFQMTSFFANIVNESFCRTTFKIQGQVYHSIGSLLPSVGKQPSFLQIYFV
FT                 KNDVIERDIRLDNYSSLSPDLVLELQRMLHNANGYIKDFLSASEIMTKNDN
FT                 VQLVIHANKKVNDVHKGRLNLPRTNEIAVLLSGNIGDKRDIVIRQRDEGLQ
FT                 RISETHRSYDALQYPLIFSYGENGYSIDILQYDPVQSKPGKKTVSALNFYS
FT                 YRIMERVGLNNHLLHFRELFNQFLVDMFAKIETERLRFIRFNQSKLRAENY
FT                 LHLKDAIDKNDANPSEIGQKVILPSSFTGSPRYMHEKSQDAMTYVRHYGRP
FT                 DLFITFTCNPNWPEIKTNLYGDEKPYDRHDLVSRVFYLKVKKLKKILIQHK
FT                 LFGEVRAFMLSFEWQKRGLPHVHILLWLLNKIKPNQIDEIISAEIPNHEKD
FT                 PKLYEIVKSNMIHGPCGELNLKSPCMSEKTCTKRYPRPFRDETQSDHDGYP
FT                 LYRRRSVENGGFTVNINGLTVDNRWVVPFSPVLSRTFDAHINVELCSSIKS
FT                 IKYVCKYINKGSDLSSFSLKNEYDEILIYETGRYISTSEAVWRILGFNIHE
FT                 RFPSVMQLSVHLENGQRVYFTDENLMEKLKNPKNTTLLAFFNLCKSDDFAK
FT                 KLLYCEIPSYYVWKDNTFIRRKIGAKVYGFPDVFKSQVLGRIYTIHPNNSE
FT                 CYFLRLLLTKIRGPTCFNDLKTVNNEIHPTFKSACQSLGLLEDDNHWNLTF
FT                 EERAISDNPCSLRELFAIILVFCDVGDPLRLWERHKDKLFSDIKFTLQQKF
FT                 LEMNETIILEKAQNECLLLLQKVIKDLSGNSLSFFGLPDPIYLESELEQKR
FT                 NYFYERETSYDYELASAIIKTHESKLNEEQAIVFHQITDSLFNNEGNIFFL
FT                 DAPGGTGKTFLINLLLAKVRICGKIALAVASSGIAATLLWGGRTAHSVFKL
FT                 PIDILSHENPVCNISKQSDAAKVLRDCQFIVWDESTMSHKKCVEALDRSLQ
FT                 DIRNNNLPMGGITVLFSGDFRQTLPVIPSGTPADEINACLKSSHLWNKMVV
FT                 LHLSKNMRVHVGSEKNMEEFAQILLEIGNGTRYEVDDRIVLDDNTCVVVNQ
FT                 INELIAKIYPNMKKIQSIHYSWFKERAILSARNEDVLEINNLCLKNIESPE
FT                 NTYLSIDSTTEIENAVHYPVEFLNTLNPAGCPPHTLHLKVGVPIMLLRNLK
FT                 PPKLCNGTRLIIIALHKYLIEAKIITGPNEGETVFIPKIPIIPSNLPFQFK
FT                 RFQFPVKLCFAISINKSQGQTLKTVGVDLRHDCFSHGQVYVAFSRVSSPEN
FT                 LFVLQPTCKTKNIVYKQVLC"
XX
SQ   Sequence 5801 BP; 2007 A; 887 C; 952 G; 1955 T; 0 other;
     aatttcatga aatttcactt tccatctctg atcgtctcat tttaaatctg tttcattttt        60
     tacaggtata aaattgtggt actaacaaaa actttaaaac acggacaatg gcagaagatg       120
     gagaaaatat tcttattggt aatgttcttt caccacataa catttttcat gttccagctg       180
     atggaaattg tctctttagc tgtttgtcaa tgtgcattta tggcgatata ttattcaata       240
     atcaaatgcg taaaattata gttgatcacg tcatcagtgc atggcaaagg ttacactctt       300
     acacatttac atcaactggt gaaacatata cttcacctaa tgaatatgct tcagaaatgt       360
     caaaagatgg catttacggt acaacgtgtg agttaattgc tgcaagtgaa atatttgatc       420
     accaatttca aatttttaga aatggtaata ttattgctca attcggtgcc ttaaacgata       480
     gtttctcaag gttaaagtta tccggagaaa tatcaaatgg acattttgac gtgttaatac       540
     ctgtttctcg tggattatca atatctaatt ttactttttc tgaaaatttg gtcccttctt       600
     caaaattaaa acgagtgtat actaagcgaa aatctaattt ggctcaaaag aatatccgga       660
     aaaaaaataa aaatcgtatt agtatattac gttcaaaaaa aaaattgtcc tcaaataatt       720
     ggactaataa attaaactca ggtttcatgt atgacattcg aatagattat caaaatgact       780
     cgtctgttgc tttaggtcaa atgagtcttg tatgtaaata ttgcaatgca aagagatgga       840
     aggacgaagc atcaggattg tgttgtaata atggaagaac taatttacca aaattaccca       900
     caccaccaga gccacttaat agtcttttga ctggtcatca tagtctatct aaacattttc       960
     taaataatac tagaaaatat aatggttgtt tccaaatgac atcatttttt gctaacatag      1020
     taaacgaatc tttttgtcgt acaacattta aaatacaggg gcaagtttac cacagtattg      1080
     gtagtctgtt gccatcggtg ggaaaacaac catccttctt acaaatttat ttcgttaaaa      1140
     atgatgttat tgagagagat attagactcg ataattattc aagtttatca ccagacttag      1200
     tattagagct ccaaagaatg cttcataatg caaatggcta catcaaagat ttcttgagtg      1260
     cttcagaaat aatgacgaaa aatgataatg ttcagttagt aattcatgcg aacaaaaaag      1320
     ttaatgatgt ccacaaaggg agactaaatt tgccaagaac aaatgaaatt gctgtattat      1380
     tgtcaggaaa tatcggtgat aaaagagata ttgttatacg acaaagagat gaggggcttc      1440
     aaagaatcag cgaaacccac cgatcttacg atgcattgca atatcctctt attttcagtt      1500
     atggtgaaaa tggttattca atagacatct tacaatacga tcctgtacag tcaaaaccag      1560
     ggaaaaaaac tgtttcagcg ttgaactttt attcataccg tattatggaa cgagtgggtc      1620
     ttaataatca tttactacat tttagagagc tatttaatca atttttagtt gatatgtttg      1680
     caaaaattga gacagagcga ttaaggttta tacgatttaa tcaatcaaaa ttgcgagctg      1740
     aaaattattt gcatttaaaa gacgcaatcg acaaaaatga tgcaaatcca tcagaaattg      1800
     ggcagaaggt tattttacca tcttcattca ctggtagccc tcgctacatg catgaaaaaa      1860
     gtcaggatgc aatgacatat gttcgtcatt atggcagacc agatttattt ataactttta      1920
     cttgtaatcc taactggcca gaaattaaaa caaatctata cggagatgaa aaaccatatg      1980
     atcgccatga tcttgtgtct agggtttttt atttaaaagt taaaaaatta aaaaaaatat      2040
     taatccaaca taaactgttt ggtgaagtaa gagccttcat gctttcattt gagtggcaaa      2100
     agcgtgggtt accacatgtt catatcttac tatggttgtt gaataagatt aaaccaaatc      2160
     aaattgatga aattatttct gctgagattc caaatcatga aaaagaccca aaactatacg      2220
     aaattgtaaa gtcaaatatg attcatgggc cttgcgggga gttgaattta aaaagcccat      2280
     gcatgagtga aaaaacatgc actaaaagat atccacgtcc atttcgtgat gaaacacagt      2340
     ctgatcatga cggatatcct ctgtatcgaa ggagaagtgt tgaaaatgga ggtttcaccg      2400
     ttaatattaa cggtctaaca gttgataata ggtgggttgt tccattctcg ccagttctgt      2460
     ctcgaacatt tgatgcgcat attaatgttg aattgtgcag ttcaattaaa tctataaaat      2520
     atgtatgtaa atatatcaat aaaggttctg atttatcatc attttctctt aaaaatgaat      2580
     atgatgaaat actgatttat gaaactggta ggtatatcag tacatcagaa gctgtctgga      2640
     gaatcttagg attcaacata catgaaagat ttccttcagt gatgcaatta agtgtgcatc      2700
     ttgaaaacgg gcaaagagtt tacttcactg atgaaaattt aatggaaaaa ctgaaaaatc      2760
     caaaaaatac cactttgtta gcatttttta acctttgtaa aagtgatgat tttgctaaaa      2820
     agctcctata ttgcgaaatt ccatcttatt atgtttggaa agataacaca tttattagac      2880
     gcaaaattgg tgcaaaagtt tatggttttc cagatgtttt taaaagtcaa gtccttggta      2940
     gaatatatac tattcaccca aataactctg agtgttattt cttgcgattg ttattgacca      3000
     aaattagagg acctacgtgc tttaatgatt taaaaacagt aaataatgaa attcatccaa      3060
     cattcaaatc tgcttgccag tcactggggt tattagaaga tgataatcat tggaacttga      3120
     catttgagga aagagccatc tctgacaacc cttgtagttt gagagaatta tttgcaatta      3180
     ttcttgtatt ttgtgatgta ggagatcctt tacgtttgtg ggaaaggcac aaagacaagc      3240
     ttttttcaga tattaagttt acattgcaac agaaattcct ggaaatgaat gaaacgatta      3300
     ttcttgaaaa agctcaaaat gaatgtttac ttttacttca aaaagttatt aaggacttgt      3360
     ctggaaactc actctcgttt ttcggtttac ctgaccctat atatttagaa tctgaacttg      3420
     agcaaaaaag aaattatttt tatgaacgag agacttctta tgattatgaa ttggcatctg      3480
     caataattaa gacacacgaa tctaaattaa atgaagagca agcaattgtg tttcatcaaa      3540
     ttacagatag cttatttaat aatgaaggta atatcttctt cctcgatgcg cctggtggaa      3600
     ctggcaaaac ttttttgata aatcttttac tagctaaagt acgaatttgc ggtaaaattg      3660
     cacttgctgt tgcttcttct ggaatagcag ctaccttact gtggggtgga agaaccgcac      3720
     attcagtgtt caaattacct atagatatac tttcccacga aaaccctgtt tgtaacattt      3780
     caaaacaaag cgatgcagcc aaagttttac gagactgtca atttattgtt tgggacgaaa      3840
     gtacaatgtc acataaaaaa tgcgtagagg cattagaccg ttctctccaa gatattcgca      3900
     ataacaatct accaatggga ggaattacag ttctattctc tggcgatttt aggcaaacac      3960
     ttcctgtcat tccatcagga acaccagcag acgaaatcaa tgcttgctta aagtcatctc      4020
     acctttggaa taagatggta gttttacatt tatccaaaaa tatgagggtt catgtagggt      4080
     ctgaaaaaaa tatggaggaa tttgctcaaa ttttgttgga gattggcaac ggcacaaggt      4140
     atgaagttga cgatagaatt gtgttggatg ataacacgtg tgtagttgtt aatcaaatta      4200
     atgaattaat tgcaaaaatt tatcccaaca tgaaaaaaat tcaatcaatt cattattcat      4260
     ggtttaaaga aagagcaatt ttgtctgcca ggaatgaaga cgttcttgaa attaacaact      4320
     tatgtttgaa aaatattgaa tctccggaaa atacttactt atcaattgat tcaacaactg      4380
     agattgaaaa tgcagttcac tatcctgttg aatttttaaa cactttaaat cctgctggtt      4440
     gtcctccaca tacattgcat ttaaaggttg gtgtacccat tatgctttta agaaatctaa      4500
     aacctccaaa attgtgcaat ggtaccagat taattattat tgctttacat aagtacttaa      4560
     ttgaagcaaa aataattaca ggcccaaatg aaggagaaac tgtattcatt cccaaaattc      4620
     ctataattcc atcaaacttg ccgttccaat ttaagcgttt tcaattccct gtgaaacttt      4680
     gttttgcgat cagcataaat aaatcacaag gtcaaacgtt aaaaacagtt ggtgtagatc      4740
     taagacatga ttgcttttca catggacagg tatacgtagc tttttcaaga gttagttctc      4800
     cagaaaattt gtttgttcta caaccaactt gtaaaaccaa aaatattgtt tataaacaag      4860
     ttttatgtta atttaatgca aacaaacttt cacagagaat tgaaaacgct tcaaatttgc      4920
     ttcaacaatt atgaacaaca ataatgagtt gattgaattt ttttcatgtt gttttaaaat      4980
     cattgcataa tcaaaaattt agtagagatc ttcttgggac gtagtaacga ttttttgcga      5040
     ttaaatcatg attttgtcat gatacaatca tgattttttt agaaactatt ttttgctcct      5100
     tgaatgattc tgttcgaatt tcttgtccag gtgaatcctg tgatccttgt gtttaggtac      5160
     ttcacattta aaagtccgaa attattttcc ggaataattt aatttttcca gattataaat      5220
     ttaaattgtt attaaatgat gaaaaattca aaattccaat tccaatttcc aaaatttcag      5280
     agcatgttat atcttctttc aaaatttatt gtcaattcaa gttgctattc aattaaaata      5340
     gattacttaa ctactttttt aggtctagcg caagatctca aaatgtctgt cacactcatg      5400
     attttatatt ttttaaattt attcttttgt atgatttttc atttaatgtt tttagtgtag      5460
     agaaatatct caaaatttgc cttttttatt tattgaaatt aataaataca ttttcttaca      5520
     acagttattt attttttaat ttcaagactg ctgggtctat aaattactac catatttaca      5580
     aaattgatac tcgcaaacat gttttttgtt tttgctgatg ggtacaacaa cagcccccat      5640
     atgtaaaaat attttgtagc ttctgaataa ttatattaaa aaatataaat atgggcataa      5700
     taggtatagt aaaatatatt aatacaaaag ttattgttat aacatggtgt aatttcatta      5760
     atgacggttt atcaccgtgc gaagcacggg ttggttgcta g                          5801
//
ID   Helitron-2_DBp repbase;    DNA;    INV; 3876 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Helitron transposon from the Drosophila bipectinata genome.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3876
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 621-621 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 3' end is uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           246..3158
FT                 /product="Helitron-2_DBp_1p"
FT                 /translation="MSEVIRNEVMPPKKSNLGRHTRNTEAKRRNISNMTDE
FT                 ERASIRETERLRAMRMHNAESAETRAARLERTRLRVRQSRSAAIDLIRSQN
FT                 NERDRARVAEARLQLATDRNLQYNRLAFRYNPTVDYSSNRNVVIGRMNQVC
FT                 THCQALKFNNEPKGLCCASGKVKLPQLEAPPEPLHSLLAGSTAESKHFLSN
FT                 IRKYNSCFQMTSFGAEIITAQFMPTFKIKGQIYHKAGSLLPFSDSEHKFLQ
FT                 MYFIGDDGAEVDARYGINTSLKKPIISQLQKLFHERNHLVRLFKTAIDMMP
FT                 SDTHKIVIHADKTPAGEHIRRYNAPTIDEVAIVIVGDQFQPRDIVLHRRND
FT                 RLVNVAETHRCYDALQYPLIFWDGADGYHFNVRMVDPVNGVETNKKCSAMN
FT                 FYSYRLMVRRTDDNHILKCRQLFHQYIVDMYAKIETERLLFLRLNQTKLRS
FT                 EEYIHLRDAVMNDRNTTNVGKLTILPSSYIGSPRHMQEYAQDAMAYVRCYG
FT                 RPDLFITFTCNPAWDEIVQLLFPGQSSTDRHDITARVFRQKLKSLMDFIVK
FT                 HGVFGSVRCWMYSVEWQKRGLPHAHILIWLYDKITPDEIDDVICAEIPRAE
FT                 VDTDLHAVVIKNMIHGPCGTLNPSSPCMVDGKCSKRYPRAFAANTVTGNDG
FT                 YPLYRKRXTEDGGTSATLNMRIGDIEVDNRWVVPYSPLLSKSYKAHINVEY
FT                 CNSVKSIKYICKYVNKGSDMAVFGVQAENGDSNAVRVVDEISQYQAGRYIS
FT                 SNEAAWRIFSFPIHERYPAVVHLAVHLENGQRVYFTERNVQERVLNPPATT
FT                 LTAFFTLCQEDXFARTLMYSEVPSYYTWNATKKVFARRKRGEPVEGQPGIF
FT                 KENTIGRLYTVHPNQDECFFLRMLLVNVAGPRSFQYLKNLNGITHATFRSA
FT                 CQALNLLENDQQWDICIHDACNTAHPHQIRSFAPLLIRSSCTKNNNNKIIQ
FT                 YCNTYPKSVPRYPNKL"
XX
SQ   Sequence 3876 BP; 1155 A; 839 C; 842 G; 1028 T; 12 other;
     tatatctata tatataaaaa tgctctgttc gtatctactt cctttataga cttgaaaagt        60
     tctgaaccgt ttaagcccaa attttgacac aacatgcgtt gaggttccag ctcggttatt       120
     gtctactttt gatgttgata gcttatctgc gtttgcgaat atatcagttt tttcgcgttt       180
     ccccgtgccc ctacttttct atttaggcag ccagctaaga agaaaatgtc aaatgaaaat       240
     gtcagatgtc agaagtcatt agaaacgaag tcatgccacc caagaagtcg aatttgggtc       300
     gtcatactcg caatacagaa gcaaaaagac gtaacatttc gaatatgact gacgaagagc       360
     gggcctccat ccgagagact gagcggctga gagcaatgcg gatgcacaac gcggagtcag       420
     cagaaacgcg agcagctagg cttgagcgaa cacgattgag agttaggcag tcgcgttctg       480
     cagcaatcga tttgattcgg tctcaaaata atgaacgcga cagggcaagg gtagctgaag       540
     cgcgtttaca gcttgcaaca gatcgaaacc tgcaatacaa tcgtcttgca ttccgatata       600
     atccaactgt tgattatagc tcgaatcgca atgtcgttat tggccggatg aatcaggtct       660
     gcacacactg tcaggctctc aaattcaaca acgaaccaaa aggattgtgt tgcgcttccg       720
     ggaaagtgaa attgcctcaa cttgaagcac caccagagcc tctgcactct ctattagctg       780
     gatctactgc tgaatcgaag catttcctgt cgaacattag gaaatacaac tcttgcttcc       840
     aaatgacgtc atttggtgcg gaaattataa ctgcgcaatt catgccaact tttaaaatca       900
     aaggacaaat ctatcacaaa gccggttccc tgcttccgtt ctcagacagc gaacacaaat       960
     ttcttcaaat gtacttcatt ggtgatgatg gagctgaagt cgatgcacgt tatggaatca      1020
     atacctcgct gaagaagccc attatttcgc agctacagaa gctttttcac gaacggaacc      1080
     atttggtgcg tttgttcaaa acagcaatcg atatgatgcc ttcggatacc cataaaattg      1140
     tcattcatgc agacaaaacg cctgctggag aacatatcag gagatacaat gctccaacta      1200
     tagacgaagt ggcaattgtc atagtcgggg atcagttcca acctcgagat attgttctcc      1260
     atcgacgaaa cgatcgattg gtaaacgtcg cagaaactca ccgttgttac gatgctttgc      1320
     agtatccact catcttctgg gatggtgccg atggatatca tttcaatgtg aggatggtag      1380
     atccagtcaa tggtgtagaa acgaataaaa agtgcagcgc gatgaacttt tactcatacc      1440
     gattaatggt tcggaggacc gatgacaatc atatattgaa atgtcgtcag ttgtttcatc      1500
     agtacattgt cgatatgtat gcaaaaattg aaacagaacg tttgctgttc ctccgattga      1560
     atcagacgaa acttcggtcc gaggaatata tccatttgcg ggatgctgtg atgaatgacc      1620
     gtaatacaac caacgttgga aagctcacga ttttgccatc ctcatacata ggtagtccac      1680
     gccacatgca ggaatatgct caagatgcca tggcatatgt tcgttgctac ggccgtccag      1740
     acttatttat caccttcaca tgcaatccag cttgggacga gatagtgcag ctgttatttc      1800
     ctggacaatc gtctacggat aggcatgaca tcacagcccg tgttttcaga caaaagctca      1860
     agtcactgat ggatttcatt gtgaaacatg gagtttttgg atctgtgcgg tgctggatgt      1920
     attcagtaga atggcagaag agaggattgc cgcatgcgca catactgatc tggctgtatg      1980
     ataaaattac tccagacgaa atcgacgatg tgatatgcgc tgagattcca cgggccgagg      2040
     ttgatacgga tttgcatgca gttgtcatca agaacatgat ccatggccca tgtggtaccc      2100
     tcaacccaag ttcaccatgc atggtagacg ggaagtgttc caagcgatat cctcgagcat      2160
     ttgcagccaa caccgtaaca gggaacgatg gatatcctct gtataggaaa cggtnaactg      2220
     aagatggcgg gacttcggca actttaaaca tgagaattgg tgatattgag gtagacaatc      2280
     gttgggtggt tccatactca cccctattgt caaaatcata caaagcgcac atcaacgtag      2340
     aatattgcaa ttccgtgaaa tcgattaaat atatctgtaa gtacgtgaat aaaggcagcg      2400
     atatggcagt ttttggtgtt caggcagaaa atggtgacag caatgcagta cgagttgtcg      2460
     atgaaatctc tcaataccag gctggaagat acataagcag caacgaggct gcatggcgaa      2520
     ttttttcgtt ccccattcat gaacgctatc cagctgtagt tcacttggca gtccatttgg      2580
     agaatggtca acgtgtctat ttcaccgaac gaaatgtaca agaaagagtc ctgaatccgc      2640
     ctgcgacaac tctgactgcc ttcttcacct tatgccagga agatgmtttt gccagaacct      2700
     tgatgtattc agaagtgccc tcttattaca cgtggaatgc cactaaaaaa gtgttcgcgc      2760
     gacgcaaacg aggcgagccc gtcgaaggac aacctggcat cttcaaagag aatacaatcg      2820
     gtagactcta tacagtgcat cctaatcaag atgaatgttt cttccttcgc atgctgttgg      2880
     tgaatgtggc cggtcccagg tctttccagt atttgaaaaa tctcaacggc atcacacatg      2940
     ccaccttccg cagtgcgtgc caagccttaa atttgttgga gaacgaccaa cagtgggata      3000
     tctgcattca tgatgcgtgc aacacggcac atccgcacca aattcgctca ttcgcaccat      3060
     tgctcattcg ctctagctgt accaaaaata ataataataa aataatacaa tactgcaaca      3120
     cttatccaaa aagtgttccc cgatatccga ataaattata ggaatcacga ttggctcagt      3180
     ggacgagcga ttctcgctgc caagaacaaa gatgtctacc agctcaatga tgtaatccaa      3240
     tccagcatag aaactgacga aattacatat aagtcgatag acaccgttgt ggaggcagag      3300
     gaagcagtta attaccctac ggagtttcta aactcacttg atctgcctgg aatgccacca      3360
     cacatattga aattaaaaat aggtgtgccg attatcatgc tccggaatat gaatcagccg      3420
     aaactctgca acggtacgcg actcgcagtc aagaaattga tgaacaacgt tgtagaagca      3480
     acgatcataa gtggtccttt taaaggtgaa gatgtcctca ttcctaggat tcctatgttc      3540
     ccgactgata caccgttcca gttcaagaga ttgcagtttc ccattcgttt ggcgttcgca      3600
     atgaccataa ataaagctca aggtcaatct ctggagtttt gtggtttgga tttggatgaa      3660
     gattgttttt cacacggaca attatatgtt gcgtgttccc gtktcggaaa accaaataga      3720
     gaaacaaaga atattgtata cckacaagta ttamggaatt aaatkaatkt gaaaattatt      3780
     cttttttttt wacttatttc ttatgcgtgc aaccacaaca tgccacagcg aaacgtggca      3840
     gggtacwgct agtmgttaat aaaaatcwat mtaatg                                3876
//
ID   Helitron-2_DF repbase;    DNA;    INV; 2129 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 17.06, Created)
DT   28-JUL-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   Helitron-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_DF.
XX
NM   Helitron-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2129
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 766-766 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1917
FT                 /product="Helitron-2_DF_1p"
FT                 /translation="MPAIRRSNLGRRTRNATNQSNYRSNRTAQEREYVNER
FT                 ERIRISQTREAPNRPMHDAFNQELHRERLYDLNALKELIQTNLPLLNKQQK
FT                 YVFETLMEVTNDETGGIYFLDAPGGTGKTFLISLILATIRSQNKIALALAS
FT                 SGIAATLLEGGRTAHSALKLPLNMQSNETPTCNVSKNSAMAKVLQQCKLIV
FT                 WDECTMAHKKSLEALDRTLRDLRSNNNRFGGAMILLGGDFRQTLPVIPRST
FT                 PADELNACLKSSNLWKYVKVLHLSKNMRVELQNDQSGNIFSKQLIDIGNGK
FT                 FPIDMLTGCINFPQSFCQLIRSKDELIQKVFPDVSQNYRNHDWLSERAILA
FT                 AKNLDVNELNFKIQEQIIGELKIYKSVDSATNQDGVVNYPPEFLNSLDLPG
FT                 LPPHNLQLKVGSVVIMLRNINQPRLCNGTRLAIKKLLNNVIEATILKGKYK
FT                 GEDVLIPRIPMIPTNVPFEFKRLQFPVRLAFAMTINKSQGQSLSVCGINLE
FT                 NPCFSHGQLYVACSRVGKPSDLFIYAPGNQTKNIVYHKALQ"
XX
SQ   Sequence 2129 BP; 733 A; 367 C; 411 G; 618 T; 0 other;
     tcttatatat aaaaatgaat cgcaaaatgt gttggtaagc gcatcacatg aaaacggctt        60
     gaccgatttg gctgaaaatt ggtagggaga cagcttagaa caagaagaag gttgtagcat       120
     aagaaaatta tgggaaaacc ttctggaaaa gtcgctagcg gcttaacaga tgtacacaat       180
     gttgtatgta attacgcaat cgttcttatg gggtaggcag taggcatttg gttttaagta       240
     aaaaggtttg ctttatcaaa gtttttataa aaaaaaagtg ttttgtttgt gagtagtgaa       300
     aaaataatgc ctgctataag acgaagcaat ttaggtagaa gaaccagaaa tgctacaaac       360
     cagtctaatt accgatctaa tcgtactgca caagaacgtg aatacgtaaa tgaacgtgaa       420
     agaattcgga tatcacaaac gcgtgaagcg cccaatcgtc caatgcatga cgcttttaac       480
     caagagttgc atcgagaaag actgtatgat ctcaacgctt tgaaagaatt aattcaaaca       540
     aatcttccac tgttaaataa acaacagaag tatgtatttg aaactcttat ggaagtaaca       600
     aatgatgaaa ctggagggat ttacttctta gatgcacctg gtggtacagg aaaaactttt       660
     ttgatttcat taatattagc aacaatacgc tcacaaaata aaattgcact tgcactcgct       720
     tcgtcgggaa tcgcagcaac tttgcttgaa ggtggtcgaa cagcccattc agcactaaaa       780
     ttgccattaa atatgcaaag caatgaaact ccaacctgca acgtttcgaa gaactctgca       840
     atggcaaagg ttttgcagca atgtaaattg attgtttggg atgaatgcac gatggcacat       900
     aaaaaatctt tggaggcttt agacagaacc ttaagagatc tacggagcaa taataaccga       960
     tttggtggtg caatgatttt attaggagga gattttcgtc aaacattgcc agtgattcca      1020
     cgatcaacgc cagctgatga actcaatgca tgtctaaagt cctccaattt gtggaaatat      1080
     gtcaaagtac ttcatttaag caagaatatg cgtgtcgagt tgcaaaatga ccaatctgga      1140
     aacatatttt ctaaacaact cattgacatt ggtaatggca aatttcctat agacatgttg      1200
     actggctgca ttaactttcc tcaaagtttt tgtcagttaa ttcgatcaaa agatgaactt      1260
     attcagaagg tgtttccaga tgtttctcaa aattacagaa accatgattg gttgagcgaa      1320
     cgagctatac tggctgcaaa aaacttagat gtgaatgaat taaatttcaa aattcaagaa      1380
     caaattatag gcgaattgaa gatatataaa tcagttgatt cggctactaa tcaagatggt      1440
     gtagtcaact atccaccgga atttttaaac tcgctggatt tgccaggttt gccacctcac      1500
     aatcttcaat taaaggttgg atcggtggtt ataatgttgc gaaatatcaa ccaaccgcgt      1560
     ctttgcaacg gtacacggtt agcgataaaa aaattactta acaatgtgat agaagcaact      1620
     atactcaaag gaaaatataa aggagaagat gttctcatac cgcgcatccc aatgattccg      1680
     actaatgtgc catttgagtt taaacgacta cagtttccag tgcggcttgc ttttgctatg      1740
     actataaaca agtcccaggg gcaatcatta agtgtttgtg gtattaatct agagaaccca      1800
     tgtttctcac atggtcaatt gtatgttgcc tgttcccgtg ttggaaaacc atcagatttg      1860
     tttatctatg cgccaggtaa tcaaacaaaa aacatcgtat accacaaagc actacaatga      1920
     taataataaa aattatgatt cacatgatta acaataaagc gattacatac ttttaaatcc      1980
     ttatatatgt tttattaaat tattttttat tcacaacgcc ctattacagg gtgacggttc      2040
     tgtttaggag atttttttta aatacgtagg cacaaaaact gccacattac aaatcttttt      2100
     gacaggacga agtctgtcgg gtcaactag                                        2129
//
ID   Helitron-2_DRh repbase;    DNA;    INV; 5713 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5713
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1388-1388 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           254..5095
FT                 /product="Helitron-2_DRh_1p"
FT                 /translation="MIIKSIGHERQSAIKGAVVNVPIPVSNIVTSLPRAFH
FT                 EAEVVQLHLKRRMEYGHDFMAETIRPSKIADAIRYLVSTELYRKHNVSVNE
FT                 QWISDFTSETVPFVASQADLAFVEGQLAIQQEDVNLEAGNSEENEEAEELN
FT                 PGGQETLLENNQAHNVGIPRITMAPGEGQKPLDVILDVDSEELAFPSIYAG
FT                 VKRPSSESYTTIVRSELRNVDRRGCRTDKLFFNYKKLELLKIRNNISTCLR
FT                 KRSASSAITAANVLDEAFMGNLISHDDGYRILKDIRTSPAHWEDEKKKVMA
FT                 MIRQFGLPTFFITLSAAETRWPELLVLLKRNVDRIDISEEEALNLQFREKA
FT                 RLIRTDPVTCARYFDYRYREVLKLMKKPGGVFGSNFVTTYYWRVEFQQRGS
FT                 PHIHGMFWLKDAPEVDFNSEESIASVVAFIDQFVTVDVTNTDLAPYIEYQK
FT                 HKHGHSCLKKVRESVCRFGIPYPPMPRTEILKPLPEETPNLSLHHENYQKI
FT                 RSLLLRDQSEDLISHLSIFENFLSHDEVSLSYEDYIYAIRSSLKKTQIFLK
FT                 RTFAEIQVNAYNKHILSMQRANMDIQLILDPFACCSYIINYINKSQRGISK
FT                 LMREAANDIRRGNSSIRQKLQYLGHKFISGTEISAQEAVYCCMGLALSETS
FT                 NKCVFINTFPPEQRVRMLRPTSVLQNMPQDSTDIFQKGLLDRYEQRPDSHD
FT                 GLCLADFAANYEYSKTRGRARQGENSNNEAEEENEVLGTVFFALRDGSGFI
FT                 RERNQPSIIRYSPFNINSDRPNYFRALVMLYSPWRDEQVELFQRNCEEFYH
FT                 EHEEAIKANFDRYNAIDSLEDALRRAMEAEESSEENVDEEAAVNEEFRALA
FT                 FPEISSQINVLNLDDRVQEVDPDSNIRVIKLPPIISPENLATLVRSLNLKQ
FT                 KTFLTHVLHNARRNASFHEFVGGGAGVGKSRLISTLFQSLSKEYNGRVGCD
FT                 PTSVKILLCAPTGKAAFGIGGSTLHSMFSLPVNQAGSAFRSLSPDLLNTLR
FT                 SRFIDLKVLIIDEISMVGATMFSHLDSRLKQIFSNVDTPFGGISVIVFGDL
FT                 RQLRPVCDRWIFQPPSHDPYSAIFGSHLWSPFRFFELTEIMRQRDDQPFAI
FT                 ALNNMASGQMSSEDIVLLRGRTSVESQIPNDAIHLFSSNQDTDRYNREKLN
FT                 SIPTDQFISEAIDSVKSAHISSEQGNRCLEQARALKTSETQGLCTSLILKT
FT                 TAKYMMTVNVDTSDGLVNGATGVLREIGFNTSNSPNILWIQFLDDSIGVAA
FT                 RSKCSHRQEASWTPVVKIIKSFQINSNQATTIDRKQFPVVPAEAITIHKSQ
FT                 GATYSKVVVHTSPSMQRAALYVACSRATSAAGLYIIGPFVPPRSAQGSPSE
FT                 EELRELRSAKLLSTHFDCLLNSPNLHVFFHNTESLHCHISDVCSDQLMLMS
FT                 SILCFVEASTYSNEAYDIPGFATAVRLDCQSVANGARPKRGILVFVRNELF
FT                 ENVSLCSSGRFLANSSNLASPVFEFAIFRYRSLGIVVIYKSPTYPLLKFET
FT                 EFKELFQRHTFLNSNSLVLGDFNLCLHSISGCCRRVFDFLADVKGFSSLLD
FT                 LDSSTTNCNTHIDWAFSNIFDNRATARTFETTYSYHSGILVSVREAE"
XX
SQ   Sequence 5713 BP; 1703 A; 1178 C; 1245 G; 1587 T; 0 other;
     gcaaatacgt aagctttcta gagcctattt ggaagaaaat tgcgagttta aggaagagat        60
     ttaccagaat gcaagccagc ttgctttcac tggggaatcc tttaagttct gtggcacatg       120
     ccacggcaat ataaaagccg ggagaaagcc caaaggtgcc atttccaacg gcctagactt       180
     cccagaaatt cctcattcct tgagggggct tactcccttg gaggagcgac tgatttcacc       240
     tcgccttcca tttatgataa ttaagtcgat aggtcatgag cgtcagagtg caataaaagg       300
     agctgttgta aatgtcccca ttccggttag caacatcgtg acgtcccttc cacgagcttt       360
     ccacgaggca gaggttgtac agctccacct caagcgaaga atggagtacg gacatgattt       420
     catggcagag accattaggc cttccaaaat tgctgacgcc atcaggtact tagttagtac       480
     agagctttac agaaagcaca atgtgtcagt gaacgagcag tggatctctg atttcacatc       540
     cgaaactgtt ccattcgtag cttctcaagc ggacttagcc tttgtagagg gacaactagc       600
     catccagcag gaggatgtaa acttggaggc gggaaattcc gaagagaatg aagaagccga       660
     agagctaaat cctggaggac aggaaactct gcttgagaat aaccaggcac acaatgtagg       720
     aattccgaga atcacaatgg ctccaggtga gggccaaaag cctctcgacg tgattctcga       780
     tgtcgactcc gaagaattgg cgttcccaag catttatgct ggcgtcaaga gaccatcttc       840
     ggaaagttat acaaccatag ttagatcaga gcttaggaac gtagatagaa gaggttgtag       900
     aactgacaag ttgttcttca attataagaa gttggaattg ttgaaaattc gaaacaatat       960
     ttcaacttgc ctacgtaagc ggagcgcttc tagcgcgata actgccgcca acgtactcga      1020
     tgaagctttc atgggaaact taatttccca tgatgacgga tatcgaattc ttaaggacat      1080
     tcgcacgtct cctgctcact gggaagatga gaagaagaaa gtcatggcta tgattcgcca      1140
     atttggtttg ccaactttct tcataactct gtcggccgca gaaactaggt ggccagagct      1200
     gctagtactg ctcaagcgca atgtagatag gattgacatt agtgaggagg aagctttgaa      1260
     cttacagttt agagaaaagg cgcggctgat cagaactgac ccagtgacgt gtgctaggta      1320
     tttcgattat aggtataggg aagttctaaa gctcatgaag aagccggggg gagtctttgg      1380
     aagtaacttt gttactacct attattggcg agttgagttt caacagaggg gttcccctca      1440
     cattcacggc atgttttggc tgaaagacgc cccggaagtg gatttcaaca gtgaagaatc      1500
     tattgctagt gtagtagcct tcattgatca gtttgtaact gtggatgtta caaacacaga      1560
     tttggctccg tacattgaat accaaaagca taagcacggg cattcgtgcc ttaaaaaggt      1620
     gcgcgaatcc gtttgtcgat tcggtattcc atacccccca atgccccgca cggaaatatt      1680
     gaagccactt cccgaagaaa ctcccaattt gtctcttcat cacgaaaact atcagaaaat      1740
     tcgcagtctt ttacttcgcg atcaatccga ggatttgatt agccatctta gcatattcga      1800
     aaattttctt tctcacgatg aggtgagcct cagttacgag gactatatat atgctattag      1860
     gtctagtttg aaaaaaacac agatttttct gaagagaaca tttgcagaaa ttcaagttaa      1920
     cgcctataat aaacacattc tttcaatgca aagggcaaat atggatatcc agttaatttt      1980
     ggaccctttt gcgtgctgta gctacataat taattacatt aacaagtccc aaaggggtat      2040
     ttcgaagtta atgcgcgaag cagctaatga cattcgaaga ggcaactcaa gcattcgtca      2100
     aaagctacag tatctcggtc acaagtttat ttcgggcact gagatctctg ctcaggaggc      2160
     cgtatattgt tgtatgggat tggcgttgtc agaaacaagc aataaatgcg tgttcataaa      2220
     caccttccct ccagaacaac gagttcgtat gcttagacct acaagcgtcc tgcaaaatat      2280
     gcctcaggat tccactgaca tctttcagaa aggtttgctg gacagatacg aacaaagacc      2340
     agattcccat gacggcctgt gtttagccga ttttgctgca aattacgagt attctaaaac      2400
     ccgtggtaga gctcgccaag gggaaaatag taacaatgag gctgaagaag aaaatgaggt      2460
     cttaggaaca gtttttttcg cacttcgcga tggtagtgga tttattaggg aaagaaacca      2520
     gccgagtatc attaggtata gcccctttaa tattaattct gataggccca actattttag      2580
     agcattagtt atgctatatt ctccatggag agatgaacag gtagaattgt ttcagagaaa      2640
     ttgtgaggag ttttatcatg agcacgagga ggctattaaa gccaactttg ataggtataa      2700
     tgccatagac agcttagaag acgcgctcag aagggccatg gaggctgagg aaagtagcga      2760
     ggaaaatgta gatgaggagg ccgcagttaa tgaggagttt agggccttag cttttccaga      2820
     aatatcttct caaatcaatg ttttaaactt agacgaccgt gttcaggaag tagatccgga      2880
     tagcaatatc cgcgtaataa agctcccgcc aattatttcc cctgaaaatt tagccacctt      2940
     agttaggtct cttaatttaa agcaaaaaac tttccttacg catgtcttgc acaatgcaag      3000
     gagaaatgct agtttccatg agttcgtagg aggcggagca ggtgtcggca agagtagact      3060
     tatatccacc ttattccagt ccctttccaa ggagtataat ggtagagtag gatgcgaccc      3120
     aacttctgtt aaaatactgc tgtgtgctcc cacaggcaaa gctgcttttg gaatcggagg      3180
     ctccactctc cattccatgt tctctctccc tgtaaatcag gctgggtctg catttaggag      3240
     tttaagccct gatctgttaa ataccctgcg ttcaagattt attgatctta aagttcttat      3300
     aatagacgaa atttctatgg tcggcgcaac catgttttcc catctggact ctcgccttaa      3360
     gcaaattttc tccaacgttg atactccctt cggaggcatt tcggtcatcg tgttcggcga      3420
     tcttaggcaa ttgcggccag tttgtgatcg ttggattttc cagccgccgt cgcatgatcc      3480
     atacagcgct atatttggat cccacctctg gagtcctttt aggtttttcg agctcacaga      3540
     gataatgcga cagcgagatg accagccgtt tgcaatagca ctcaacaaca tggcgtccgg      3600
     ccaaatgtcg tctgaagata ttgtcctact tagaggccgc acttccgtag aaagtcagat      3660
     tccaaatgac gccattcacc ttttttcaag caatcaggac acagaccgat acaataggga      3720
     gaagctcaac tcgattccca ctgatcagtt catttcggaa gccattgact ctgtaaaatc      3780
     tgcacatatt agctcagagc aggggaacag atgtctggaa caagctaggg cattaaaaac      3840
     atctgagaca caaggtttgt gtacctcgct cattttaaaa accactgcta aatacatgat      3900
     gacggtcaat gtagacacat cagatggtct cgtaaacgga gccactggtg tccttaggga      3960
     gataggtttc aacacgtcca actctccaaa cattctttgg atacaatttt tagatgacag      4020
     tataggagta gctgcacgat caaagtgcag tcatcgccaa gaggcttcat ggaccccagt      4080
     agttaagatc ataaaaagct ttcagattaa ttctaaccag gccacaacca ttgaccgaaa      4140
     gcagtttcca gtggtacctg cagaagcaat aactattcac aaaagtcaag gcgctacgta      4200
     cagcaaagtg gtggttcaca ctagtcctag catgcagaga gctgcgctgt acgtagcctg      4260
     tagcagagcc acaagtgcag caggtctcta tattattgga cctttcgtcc ccccaagatc      4320
     cgcccaggga tcgccttccg aggaagagct ccgagaactg cgttccgcta agttactgag      4380
     tacccatttc gattgtttac tcaatagtcc gaaccttcat gtctttttcc ataatacgga      4440
     aagcttgcac tgccacatta gcgatgtgtg ttccgatcag ctaatgctta tgtcttccat      4500
     tctgtgcttc gttgaggctt ccacatactc aaatgaagca tacgacattc ctggcttcgc      4560
     cacagcagtg cgactagatt gccagtcagt agctaacgga gctcgaccaa aaagaggcat      4620
     tctcgtattc gttcgaaacg aactctttga gaatgtcagt ctttgttcaa gtggtcgctt      4680
     tctggctaat tcctcaaatt tagcctctcc agtgttcgag tttgccatct ttaggtaccg      4740
     gtctttaggg attgtagtta tttataaaag tccgacctat ccgttgttaa agtttgaaac      4800
     agagtttaag gagttatttc agcggcacac atttttaaat agtaatagtt tagtgttagg      4860
     agatttcaat ttatgccttc actccatctc tggctgctgt aggagagttt tcgattttct      4920
     agcagatgta aaagggttta gttcgttgct agatttggac tcgtcgacaa ccaattgcaa      4980
     tacgcatatt gattgggcgt tttcaaatat tttcgataat agggccactg cgcgcacatt      5040
     tgagactaca tatagctacc acagtggtat attagttagc gttagggagg ctgaataggt      5100
     agggaaaatt gtatatatta tatttatagt atgtatatat ttaaattaaa caaaaaacca      5160
     aaaaacaaaa aaaattaaat agttgcatgc taaatttttt tatagtaact aaattaaatt      5220
     ttatagtaaa ttaaataaaa caaaaaaccc caaaaaaaat taaatagttg catgcaaaat      5280
     ttttttatag tatgtatata cttaaattaa actaaatttt tttttattaa aaaaaacgca      5340
     aaaaccccaa aaaaaaacta attagtaagg tcaaataagt attagtagta ttagtagtaa      5400
     gtacataagt atgccttccg tatgttacgg ataaacaaaa ttttggggaa catggagatt      5460
     ccaaacttga ataaagtttg gcaactcaag tcgactcgta ggtccccaaa ttttattttg      5520
     gtttgaaaga ccccgttgca aatcaacggc ctccacgtgg tgttccctgg gtaccgattt      5580
     taacataaaa atcgggagct aattcgagcg gcgaaaaaca tacaagaagg catatttata      5640
     ttaagttgtt tagctgagta acgggtatct aatagtcgag gcactcgact atagcgttct      5700
     ctcttgtttt tta                                                         5713
//
ID   Helitron-2_DSuz repbase;    DNA;    INV; 15856 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-15856
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 126-126 (2022).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           4164..10727
FT                 /product="Helitron-2_DSuz_1p"
FT                 /note="HUH nuclease and DEAD-like helicase."
FT                 /translation="MPRLSRPTASQRARNQLLRNRANRENIEYAEMERVEN
FT                 VEAHRRRRENFLVRDAEQGVNTASRRSRRLNLTARAVEQAANTRSRSERRQ
FT                 ISELRDIEQDQDTANRRERRLDAAFRADEQAADTRRRSNRRQNSQVRATEQ
FT                 AQNTADHLERRLDPVFRAGEQAADTSRRSIRRRNSQVRATEQAQNTADHLE
FT                 RRLDPVFRAREQAADTSRRSIRRRNSQVRATEQAQNTADHLERRLDPVFRA
FT                 GEQAADTRRRFIRRRNSQVRATEQVQNTADHSERRSNPAFRADEQAADTRR
FT                 RSIRRRNSQVRATEQVQNTADHSERRSNPAFRADEQAADTRRRSIRRLDPT
FT                 YRAGEQEANTLQRAQVRSTQDRLLERAQDRARRATARSFRDRRVVEQARNT
FT                 LARRSARIAARQATIDAIQNISQRVSQYRSLSGNREAENLRNLIRSQEIRH
FT                 SISQEHRPSRRPTEVEVLIATFNRKVKLGPDQICLCCKGLWFPKQINKLSR
FT                 AYLEEHCEFREEIYQNASQLAFTGESFKFCATCHSNIKAGRKPKGAISNGL
FT                 DFPEIPHCLRGLTPLEERLISPRLPFMIIKSIGHERQSAIKGAVVNVPIPV
FT                 SNIVTSLPRAFNEAEVIQLHLKRRMEYGHDFMAETIRPSKIADAIRYLVNT
FT                 ELYRKHNVSVNEQWISDFTSETVPFIASQADLALVEEQLAIQQEDVNSEAT
FT                 NSDENAEAEELNPGGQETMLENNQTHNVGIPRITMAPGEGQRPLDVILDAD
FT                 SEELAFPSIYAGVKRPSSESYTTVVRSELRNVDRRGCRTDKLFFNYKKLEL
FT                 IKIRNNISTCLRKRSASSAITAANVLDEDFMGNLISHDDGYRILKDIRTSP
FT                 AHWEEEKKKVMAMIRQFGLPTFFITLSAAETRWPELIVLLKRNVDRVEINE
FT                 EEALNLQFREKARLIRTDPVTCARYFDYRYREVLKLMKKPGGIFGSNFVTT
FT                 YYWRVEFQQRGSPHIHGMFWLKDAPEVDFNNEESMSSVIAFIDQFVTVDVT
FT                 NTDLAPYVEYQKHKHGHSCLKKVRGQSVCRFGIPYPPMPQTEILKPLPEET
FT                 QNFSLHHENFKKIRSFLLRDQSDDLISHLSIFENFLSHDQVSLSYEDYIYA
FT                 IRSSLKKPQIFLKRTFAEIQVNAYNKHILSMQRANMDIQLILDPFACCSYI
FT                 INYINKSQRGISKLMREAANDIRRGNSSIRQKLQYLGHKFVSGTEISAQEA
FT                 VYCCLGLALSESSNKCVHVNTFPPEQRVRMLRPTSVLQNMPQNSTDIFQKG
FT                 LLDRYEQRPDSHEGLCLADFAANYEFSRSRGRTRQGRNSDNEAEEENDILG
FT                 EVYFALRDGSGFIRERNRPSIIRYSPFNINIDRQNYFRALVMLFSPWRDEQ
FT                 VDLVQRNCEEFYLGNEEAIKANFDRFNSIESLEDALRRAMEVEENNEENID
FT                 EEAAVNEEFRALAFPEISSQINVLNLNNNVQEIDPDSNIRIIKLPPIISAE
FT                 NLATLVRSLNLKQKTFLTHVLHNARRNASFYEFVGGGAGVGKSRLISTLFQ
FT                 SLSKEYNGRAGCDPTSVKILLCAPTGKAAFGIGGSTLHSMFSLPVNQAGSA
FT                 FRSLSPDLLNTLRSRFIDLKVLIIDEISMVGATMFSHLDSRLKQIFSNVDA
FT                 PFGGISVIVFGDLRQLRPVCDRWIFQPPSHDPYSAIFGSYLWSPFKFFELT
FT                 EIMRQRDDQPFAIALNNMASGQMSSDDISLLRTRISDESQVPNDAIHLFSS
FT                 NQDTDRYNREKLSSIPTDQFNSEAIDSVKSAQLSSEQRNRCLEQARVLKTS
FT                 ETQGLCTSLILKTTAKYMMTVNVDTSDGLVNGATGVLREIGFSTSNTPNIL
FT                 WIQFLDESIGVSARSKCSHRQEPSWTPVVKIIKSFQINSSQATTIDRKQFP
FT                 VVPAEAITIHKSQGATYSKVVVHTSPGMQRAALYVACSRATSAAGLYIIGP
FT                 FVPPRSAQDSASEEELRELRSAKLLNTHFDCLLNSPNLHVFFHNTESLHCH
FT                 ISDVCSDQLMLKSSLLCFVEASTYSNEAYDIPGFTPAVRLDCQSVASGARP
FT                 KRGILVFIRNELFENVSLCSSGRFFANSSNLASPVFEFATFKYRSLGIIVI
FT                 YKSPTYPLIKFETEFKDLFQRHTFLNSNCLVLGDFNLCLHSISGCCRRIFD
FT                 FLADAKGFSSLLDLDSSTTNCNTHIDWAFSNIFDNRATARTFETTYSYHSG
FT                 ILVSIREAE"
XX
SQ   Sequence 15856 BP; 4133 A; 2920 C; 3343 G; 5389 T; 71 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtcggaaagt atgtaacagg        60
     cagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccgtctg tctgtccgga tgaacgctga       180
     gatctcggaa actatgagag ctaggctatt gagatttggc gtgcagattc ctgagcttct       240
     tacgcagcgc aagtttgttt cagtagagtg ccacgcccac tctaacgccc acaaaccgcc       300
     caaaactgtg gctcctgcag ttttgatgct agatagaaaa ttttaactga aatgtattag       360
     tcttgtcaat acctatcgat tgacccaaaa aaaaatttgc tacgcccact ctaacgccca       420
     caaacctccc aagaaaaaaa gctatgacgt cagagccaga caatgcgaaa tgtttttacg       480
     cgtgtatgtg tgtgtatgta aatagttgcc ggccgaactt agcggcaaag aaaaaagccc       540
     tgccggcgct cagagagagc aaagtgcgcg gctaacttat tctattgaat aatgaacaat       600
     ttatccattt gtcccattga cgggcaaaaa cctttaaaga tctgtaaatc tttatttatc       660
     tctttcaatg aatatgtatt agtttaataa atacctatag attttcccaa aaaactttcc       720
     cgttttcagt ccaatgccct caaaccaagg tagttaagac aagccttgac actagagcca       780
     gaaaatgaca tacatacata cacatgtatt tatgcatgtg tgtgggtgta aaaaattgca       840
     aactaatatc cggggcgaat ataacttttt caaacaaagc tattcaacca aatattttat       900
     tgaataacta gtgcaaacat tttgtatatt taaatgtaca gaatgtgcct taaaattgtg       960
     tatgtttagc aagcatacat aaatataaat gttttttgtc tattttatgt gttgctttct      1020
     cattcttggc gctggctgaa acaaaagcag agccgaaaaa tgagagcaag ggagagagaa      1080
     caaagtgcgc ggctaactta ttcaattaaa tattgaacaa aaaaataaac tatttgtcct      1140
     tttttccctc tgtcctccaa ccactttact tatagctgta attttgttga ttgcttatgt      1200
     tcaacgaaca tacatatatt aatacaaatg tttttattct attttatgtt gtgctctctc      1260
     tttcttggcg caggctgtaa caaatgctgg tcaaaaaaaa caatggcagt tacagcgctg      1320
     ccaacgctaa gagagagcag gtcaaaaaaa aagagaacga aaagcgctgc caacgataag      1380
     agcgtacagt gcgcggctaa cttattctat tgaatattaa acaatttact cctgttctct      1440
     accctaacac caattcattg gtctatcaat ttcaattacc tatttctgat tattgttaga      1500
     tttaaattgc tgaaaagcaa cagcatgggc gcgggaggga gggcttttgc tctttgcatt      1560
     ttttcccttc ttagtgcatt tttatgcgcc aaaagagagg tatatttggg ggaaaaggac      1620
     cgaaatccgt gcacgttaaa ttggcgggct aaaagtttac agcgctgtac atatttctgt      1680
     tgtcttttaa aagatatgta tgtttattta tgttgtttgt atgtttaatc aatgcctttg      1740
     attgtcaaac aaaatagcca gttcactcca acgcccacaa accgcccaag gagttgagaa      1800
     aagcaatgac gtcagacgtc actcagacaa tgtacatatg tatacatcat tttatttctg      1860
     catgtttgta tgtaaatagt tgcaaactga attaagcagc gaccagaact ttttcaaaca      1920
     ttatttgacc aaacatttta ttgaacaatg acgcaaacat ttaaattgaa gaaaacatta      1980
     taggctctaa aattgttcat attaagcaaa catacataaa tattaatgtt ttcagtctat      2040
     tttatgtttt gctcgtcgtt ttagactccc ctgttttcta cccttacacc atgttattgg      2100
     tctacttaat tccgattagg ttaatataag atttaagtgc ctgaaaaaca atggtawggg      2160
     cgcgggaggg agggcttttc gctctttgca ttttctctta ccgcagtgca ttcacatggg      2220
     ccaaatgaga aggaagattg gagcaaaagg accgaaaatc cgagcacgta aaattggcgc      2280
     gaaaaacttt acagctttgt aaatcttttt gttatgcctt ttaccagata tgcatatgca      2340
     ttgttttaat caatacctat agactgtccc ataaaatctt tgctacgccc atttcaacgc      2400
     ctacaaacac ccaagaagtt agggaaagca atgatgtcag agccagataa tgacatatat      2460
     ttacatatgt ttgtttgcat gtaaatagtt gcaaactgaa atgcgcggcg aatataactc      2520
     ttttaagcta tgtgcattat atacacaata cgcctaaagg ttgtttacat gtacatacat      2580
     tgtacattaa tataaatgtt atttgtatgt tatgtcttgc tctctctttc tcggcgcaag      2640
     ctgaaacaaa agcgggacaa gaaaatgaga atgaaaagcg ctgcaaacgc aaagagagag      2700
     cacagtgcgc ggctaactta ttctattgaa tatttagcaa ttcaaactat ttgtcctttt      2760
     cccctctgtc ctctggccaa tttacttatt gctattattt tgttgtttgt tgatgcttaa      2820
     caaacataca ttaatataaa tgttttcagt ctgttttatg tattgctctc actccttggc      2880
     gcaggctgaa acaaaagcgg gacaagaaaa tgagaatgaa aagcgctgcc aacggtaaga      2940
     gagagcacag tgcgcggcta acttactcta ttgaataata agcaacttaa ttttgttccc      3000
     cttttggctc tacccgaaca ccagttcatt ggtctaccac ttgtatttac caaattccga      3060
     tcaggttaat gtatgattta aattgcaaaa acaatagaaa gggcgcggga gggagggctt      3120
     tttgctccta gcattttctc tctttgtgca tttttatgcg ccaaaagaga agtatatttc      3180
     ggggaaaagg accgaaaatc cgtgcccata aaattggcgg gcaaaaactt tacagcgctg      3240
     taaatcttct gttatctctt tagtctacga ctaaccatcg taagcgaata tactgcccgt      3300
     gtgccgaatg cgatttttgc taatttttca agtgtcttcc aatttaaaag cgatattcct      3360
     aacgtaaatt aacctttgca agcaatttaa cgtaaactca ataaattaat tttcctttgc      3420
     taagaagtta acgtaaattt gtgtttttcc tttgctaaaa agttaacgta aatttgtgtt      3480
     tttgcgcgca cgcgagttgt tgctgcttct gccgacgtcg ctgccgcgat ttgctgatga      3540
     ctggttgctg cgcactttgc taagtaccat ttttaaagta attttattaa caataacaaa      3600
     catttctatt ttcatattgt aaattttttt ctggtaaatt tccgatttaa aatttttttc      3660
     attttttcat ttttcatttt aaagtagttt catttaaaat tataaacatt tctattttca      3720
     tatttaaaat tttttccgat taaattttcg attttaaatt tttgtaatcg cttcgcactt      3780
     ttttcttact tatagaaata taagacaatt gcctttttaa aggctttttt tatattttta      3840
     taaatttacg tatttattat ctaatagtcc tataagtttt agtcttttta aagactaaca      3900
     cttataattc tatttataaa ttaaggtatt tatttattca cttatttaag tgttttaata      3960
     ttttaataat atttgttagg tatcaacctt attaacatta taataatatt ttaagactag      4020
     gtctttttaa agactttttc tttgaatatt attatttcat attttcaata aacgtaacta      4080
     atcctctttt aataaaatta tatttagtat taatatttta aagatatatt tttcattagg      4140
     gaaatttaaa tatttttata aatatgcctc gacttagtag acctactgca tctcaacggg      4200
     ctaggaatca attattaaga aatagggcaa atagggaaaa cattgagtac gcagagatgg      4260
     agagggtaga aaatgtagaa gctcatcgta ggcgaaggga aaatttttta gtcagggatg      4320
     cagagcaggg cgttaataca gcgtctcgta ggtcaagacg ccttaatctg accgctcgtg      4380
     cagtcgaaca ggctgccaat actcggagtc gttcagaaag gcgacagatt agcgagctta      4440
     gagatataga gcaggatcaa gacacagcga accgtaggga aaggcgcttg gatgctgctt      4500
     tccgtgcgga tgagcaagca gccgatactc gacgtcgttc taatagacga caaaatagcc      4560
     aagtgcgagc tacagagcag gctcaaaaca ctgctgacca cttggagagg cgcttggatc      4620
     ctgtttttcg tgcgggtgaa caagcagccg atactagtcg tcgttctatt aggcggcgaa      4680
     atagccaagt gcgagctaca gagcaggctc aaaacactgc tgaccacttg gagaggcgct      4740
     tggatcctgt ttttcgtgcg cgtgaacaag cagccgatac tagtcgtcgt tctattaggc      4800
     ggcgaaatag ccaagtgcga gctacagagc aggctcaaaa cactgctgac cacttggaga      4860
     ggcgcttgga tcctgtcttt cgtgcgggtg aacaagcagc cgacactagg cgtcgtttta      4920
     ttaggcggcg aaatagccaa gtccgagcta cagagcaggt tcaaaatact gctgaccact      4980
     cggaaaggcg ctcgaatcct gctttccgtg cggatgagca agcagccgat actcggcgtc      5040
     gttctattag gcggcgaaat agccaagtcc gagctacaga gcaggttcaa aatactgctg      5100
     accactcgga aaggcgctcg aatcctgctt tccgtgcgga tgagcaagca gccgatactc      5160
     ggcgtcgttc aattaggcgc ttggatccta cgtatcgtgc gggtgagcaa gaagcaaata      5220
     ccctgcaacg agcacaggtt agatcaacac aggatcgcct gttggaaaga gcgcaggata      5280
     gggctaggag agctacagct agaagtttta gggatcgcag ggtcgtcgag caggcgagaa      5340
     atacactggc tcgacgaagt gcacgtattg ctgctcgaca agcaaccatc gatgcaattc      5400
     aaaatataag tcaaagggtt agtcagtata gaagcctaag cggaaacagg gaggcagaaa      5460
     accttcggaa cttaatccga agtcaggaga tacggcatag tatatctcag gagcataggc      5520
     ccagtagaag acctactgaa gtggaagttc ttatagccac ttttaataga aaagtaaagc      5580
     ttggtcccga tcagatttgc ctttgttgta aaggattgtg gttccctaag caaataaata      5640
     agctatctag agcctattta gaagaacatt gcgagttcag ggaagagatt taccaaaatg      5700
     caagccagct tgctttcact ggtgaatctt ttaagttctg tgcaacctgt cacagcaata      5760
     taaaagccgg cagaaagccc aaaggtgcca tttccaacgg cctagatttc ccagaaattc      5820
     ctcattgctt aagggggctt actcccttgg aggaacgact gatttcacct cgccttccat      5880
     ttatgattat taagtcgata ggtcatgagc gtcagagtgc tataaaagga gctgttgtaa      5940
     atgttccaat tccagtaagc aatattgtga cgtccctccc acgagctttt aatgaagctg      6000
     aggttataca gctccacctc aagcgaagaa tggaatatgg acatgatttc atggcagaga      6060
     ccattaggcc ttctaaaatt gctgacgcta ttagatactt agtgaatacc gagctttaca      6120
     gaaagcataa tgtgtcagta aacgagcagt ggatctctga ttttacatcc gaaactgttc      6180
     ccttcatagc atctcaagct gacttagcat tagtagagga gcaattagcc atccagcagg      6240
     aggatgtaaa ttcggaggcg actaattccg atgagaatgc ggaagccgaa gagctaaatc      6300
     ctggaggaca agaaacgatg cttgagaata accagacaca caatgtagga attccgagaa      6360
     ttacaatggc tccaggtgag ggccaaagac ctctcgacgt gattctcgat gctgactctg      6420
     aagaattagc gttcccaagc atatatgctg gcgtcaagag accatcttca gagagttata      6480
     caaccgtagt taggtctgag cttagaaacg tagatagaag aggttgtaga actgacaaat      6540
     tattcttcaa ttataagaag ttggaattaa ttaaaattcg aaacaatatt tcaacttgct      6600
     tacgtaagcg cagcgcctcc agcgctataa cagctgctaa cgtacttgat gaagatttta      6660
     tgggcaactt aattagccat gatgatggat atcgaattct taaagatatt cgcacgtctc      6720
     ctgctcactg ggaagaagaa aagaagaaag tcatggctat gattcgccag tttggtttgc      6780
     caactttctt tataactctg tcggccgctg aaactaggtg gccagagctg atagtactgc      6840
     tcaagcgcaa tgtagatagg gttgaaataa atgaagaaga agctttaaat ttacaattta      6900
     gggaaaaggc gcgcctgatt aggacagacc cagtgacgtg tgctagatat tttgattata      6960
     gatataggga agttcttaag ttaatgaaga aacctggggg tatctttgga agtaattttg      7020
     ttactaccta ttattggcga gttgagtttc aacagagagg ttcacctcat attcacggta      7080
     tgttttggct gaaagatgcc ccggaagtgg atttcaacaa tgaagaatct atgtctagtg      7140
     taatagcctt cattgatcag tttgtaactg tggatgttac aaacacagat ttggctccgt      7200
     atgttgaata ccaaaagcat aagcacgggc attcgtgtct taaaaaggtg cgcggacaat      7260
     ctgtttgtcg attcggtatt ccatatcctc caatgcccca aacggaaata ttgaagccac      7320
     ttcctgaaga aactcaaaac ttttctcttc accacgaaaa ctttaaaaaa attcgtagct      7380
     ttttgcttcg cgatcaatca gatgatttga ttagccatct tagcatattt gaaaattttc      7440
     tttctcatga tcaggtgagc ctcagttacg aggactacat atatgctatt aggtctagtt      7500
     tgaaaaaacc acagattttt ctgaagagaa catttgcaga aattcaagtt aatgcttata      7560
     ataaacacat tctttctatg caaagggcaa atatggatat ccagttaatt ttggaccctt      7620
     ttgcttgctg tagctacata attaattata ttaacaaatc ccaaaggggt atttcgaagt      7680
     taatgcgaga agcagctaat gacattcgaa gaggcaattc aagcattcgg caaaagctac      7740
     agtatcttgg tcacaaattt gtttcgggca ctgagatctc tgctcaggag gccgtatatt      7800
     gttgtctggg attggcgttg tcagaatcta gcaataaatg cgttcacgta aacaccttcc      7860
     ctccagaaca acgagttcgt atgcttagac ctacaagcgt cctgcaaaat atgcctcaga      7920
     attccactga catctttcag aaaggtttgc tggacagata cgaacaaaga ccagattctc      7980
     atgaaggcct gtgtttagcc gattttgctg caaactatga gttttcaaga agccggggaa      8040
     gaactcgtca agggagaaat agtgacaacg aagctgaaga agaaaatgat attttaggag      8100
     aagtttattt cgcgcttcgc gacggtagtg gttttattag agaaaggaat aggccaagta      8160
     ttattaggta tagccccttc aatattaata tagatagaca gaattatttt agagcattag      8220
     tgatgctttt ttctccgtgg agagacgaac aggtagattt agtacagaga aattgtgagg      8280
     agttttacct agggaatgaa gaggctatta aagccaattt tgatagattt aattccatag      8340
     aaagtttgga agacgcgctt agaagggcca tggaagtaga ggagaataat gaggaaaata      8400
     tagatgagga ggccgcagtt aatgaggagt ttagggccct agcttttccg gaaatatctt      8460
     ctcaaataaa tgttttaaac ttaaacaaca atgttcaaga aattgatccg gatagcaata      8520
     tccggataat aaagctcccg ccaattattt ccgctgaaaa cttagcaact ttagttagat      8580
     ccctcaattt gaagcaaaaa acctttttaa cgcatgtttt gcataatgca agaagaaatg      8640
     ctagttttta tgagttcgta ggaggcggag caggtgtcgg caagagtaga cttatttcta      8700
     cgctatttca gtccctttcc aaggagtata atggtagagc aggatgcgac ccaacttcgg      8760
     ttaaaatatt attgtgcgct cccacaggca aagctgcttt tggaatcgga ggctccactc      8820
     ttcattccat gttctctctc cctgtaaatc aggctgggtc tgcatttagg agcttaagcc      8880
     ctgatttgtt aaataccctg cgttctagat ttattgatct caaagtactt ataatagacg      8940
     aaatttctat ggtcggcgca acaatgtttt cccatttgga ctctcgccta aagcaaattt      9000
     tttccaacgt cgatgctccc ttcggaggta tttcggtcat cgtgttcggc gatcttagac      9060
     aattgcggcc agtatgtgat cgttggattt ttcagccgcc gtcgcatgat ccatacagtg      9120
     ctatatttgg atcttacctg tggagccctt ttaagttttt cgaactcaca gagataatgc      9180
     gacagcgaga tgaccagccg tttgcaattg cactcaataa catggcgtcc ggccaaatgt      9240
     cgtctgatga tataagctta cttagaaccc gaatttccga tgaaagtcaa gtaccaaatg      9300
     acgcaattca ccttttctca agcaatcagg acacagatcg gtacaatagg gagaagctca      9360
     gctcgattcc cactgatcag tttaactcgg aagctataga ctcagttaag tctgcacaac      9420
     ttagctcaga gcagaggaac agatgtctgg aacaagctag ggtattaaaa acatctgaaa      9480
     cacaaggttt gtgtacctca ctgattttaa aaaccactgc taaatatatg atgacggtca      9540
     atgtagatac atcagatggt ctcgttaatg gagccacagg tgttcttagg gagataggct      9600
     tcagtacgtc caacactccg aatattcttt ggatacaatt tttagatgaa agcataggag      9660
     ttagtgcacg atcaaagtgc agtcaccgtc aagagccttc atggacccca gttgttaaga      9720
     ttatcaagag ctttcagatt aattctagcc aggccactac cattgaccga aagcagtttc      9780
     cagtggtacc tgcagaagcc attactattc acaaaagtca aggagctacg tacagcaaag      9840
     tggtggttca cactagtcca ggaatgcaga gagctgcact gtatgtagcc tgtagcagag      9900
     ccacaagtgc agcaggtctt tatatcattg gacctttcgt ccctccaaga tccgctcagg      9960
     actcagcttc agaagaagag ctccgagaat tgcgttccgc taagttactg aatacccatt     10020
     tcgattgctt actcaatagt ccgaaccttc atgtcttttt ccataatacg gaaagcttgc     10080
     actgccacat tagcgatgta tgttccgatc agctaatgct taagtcttca cttttgtgct     10140
     tcgttgaggc ttccacatac tcaaatgaag catatgatat tcctggcttt accccagcag     10200
     tgcgactaga ttgccagtca gtagctagcg gagctcggcc aaaaagaggc attctcgtat     10260
     tcattcgaaa cgaacttttt gagaatgtta gtctttgttc aagtggtcgc ttttttgcta     10320
     attcttcaaa tttagcctct ccagtgttcg agtttgccac ctttaagtac cgttctttag     10380
     ggattattgt tatatataaa agtccgacgt atccgttgat aaagtttgaa acagaattta     10440
     aggatttatt tcagcggcac acgtttttaa atagtaattg tttagtgtta ggagatttta     10500
     atttgtgcct tcactccatc tctggctgct gtaggagaat tttcgatttt ttagcagatg     10560
     caaaaggttt tagctcatta ctagatttgg attcgtccac aaccaattgc aatacgcata     10620
     ttgattgggc gttttcaaat attttcgata atagggccac tgcgcgcaca tttgagacca     10680
     cgtatagcta ccacagtggt atattagtta gcataaggga ggcagagtag gtagtgtaca     10740
     tatgtatata cttaaatata atattaataa tatatattta aaaaaaaaaa aaaaaaacaa     10800
     aaaaaaattt agtaattaaa atttaattaa ttatttatta acaaaaaaaa aattaaaaaa     10860
     attgtgtctg tgtgtctgtc tgtctgtctg tctgtctgaa tgtctgtctg tctgtctgtc     10920
     tgtctgtctg tctgaatgtc tgtctgtctg aatgtctgta tgtctgtctg tctgaatgta     10980
     tgtctgtctg tctgtctgat gtctgtctgt ctgtatgtct gtatgtctga tgtctgtatg     11040
     tctgwatgtc tgtatgtctg tatgtctgta tgtctgtmtg tctgtatgtc tgtatgtctg     11100
     tatgtctgtc tgtctgtatg tctgtctgtc tgaatgtctg tctgtctgtc tgaatgtctg     11160
     tmtgtctgta tgtctgtatg tctgtctgtc tgtctgtctg tctgtctgtc tgtatgtctg     11220
     tctgtctgta tgtctgtatg tctgtctgtc tgtctgtctg watgtctgtc tgtctgaatg     11280
     tctgtmtgtc tgtatgtctg tctgtctgta tgtctgtatg tctgtatgtc tgtatgtctg     11340
     tatgtctgta tgtctgtatg tctgtatgtc tgtatgtctg tatgtctgta tgtctgtatg     11400
     tctgtatgtc tgtctgtctg aatgtctgtc tgtctgaatg tctgtmtgtc tgtmtgtctg     11460
     tmtgtctgta tgtctgtatg tctgtatgtc tgtatgtctg tctgtctgaa tgtctgtmtg     11520
     tctgtatgtc tgtctgtctg tctgtctgtc tgtctgtctg tatgtctgta tgtctgtatg     11580
     tctgtmtgtc tgtctgaatg tctgtctgtc tgaatgtctg tctgaatgtc tgtctgtatg     11640
     tctgtctgtc tgaatgtctg tctgtctgta tgaatgtctg tctgtctgtc tgtctgtctg     11700
     aatgtctgtc tgtctgwatg tctgtatgtc tgtatgtctg tctgtctgtc tgtctgtctg     11760
     aatgtctgtc tgtatgtctg tctgtctgta tgtctgtctg tctgtatgtc tgtatgtctg     11820
     tatgtctgta tgtctgtmtg tctgtatgtc tgtatgtctg tatgtctgtm tgtctgtatg     11880
     tctgtctgtc tgtatgaatg tctgtctgtc tgtctgtctg tctgtctgtc tgtctgaatg     11940
     tctgtctgat gtctgtctgt ctgwatgtct gtctgtctgt ctgatgtctg tctgtctgtc     12000
     tgatgtctgt atgtctgtct gtctgtatgt ctgtatgtct gtatgtctgt mtgtctgtmt     12060
     gtctgtctgt ctgaatgtct gtctgtctgt ctgaatgtct gtctgtatgt ctgtatgtct     12120
     gtatgtctgt atgtctgtat gtctgtatgt ctgtatgtct gtatgtctgt ctgtctgtct     12180
     gtctgaatgt ctgtctgtct gtctgtctga atgtctgtct gatgtctgtc tgtctgtctg     12240
     tctgaatgtc tgtctgtctg tctgtctgaa tgtctgtatg tctgtatgtc tgtctgtctg     12300
     tctgtctgaa tgtctgtctg tctgtctgtc tgtctgtctg tctgaatgtc tgtctgtctg     12360
     aatgtctgtc tgtctgtctg aatgtctgtc tgtctgtctg aatgtctgtc tgtctgtctg     12420
     tctgtctgaa tgtctgtctg tctgtctgtc tgtctgaatg tctgtctgtc tgtctgaatg     12480
     tctgtctgtc tgtctgtctg tctgaatgtc tgtatgtctg tatgtctgtc tgtctgtctg     12540
     tctgtctgtc tgtmtgtctg tctgtctgaa tgtctgtctg tctgaatgtc tgtctgtctg     12600
     aatgtctgat gtctgatgtc tgtctgtctg aatgtctgtc tgtctgtctg tctgtctgtc     12660
     tggctggctg gctgtctgtc tgtatgtctt acaaaaaaac acaagtatta actaatatta     12720
     aggtaaaata aatattccta aaaaaaacat agaaaattaa gtagttgcta ctgctaacta     12780
     ttcaattgtt tatgtttttt cttttcttat taaaaaaaac aaaaaaccaa aaaaaatatt     12840
     tattacattt aactttattt tataaaaact gaataggtat tattgtagta aattattgaa     12900
     aaaactaaaa aacaaaaaaa aagtatagta ggatgtctga atgtctgtct gtctgtctgt     12960
     ctgtctgtct gaatgtctgt ctgtctgaat gtctgtctgt ctgtctgtst gaatgtctgt     13020
     ctgtctgaat gtctgtctgt ctgtctgtct gtctgaatgt ctgaatgtct gtctgtctgt     13080
     ttgtctgatg tctgtctgtc tgaatgtctg tctgtctgtc tgtctgtctg aatgtctgcc     13140
     tgtctgaatg cctgtctgtc tgtctgaatg tctgtmtgtc tgtctgtctg tctgaatgtc     13200
     tgtatgtctg tctgtctgtc tgtctgaatg tctgtctgtc tgtttgtctg tctgaatgtc     13260
     tgcctgtctg tctgaatgtc tgtctgtctg aatgtctgtc tgtctgaatg tctgaatgtc     13320
     tgatgtctgc mtgtctgtcg gtctktctgt ttggttggct ggctgtctgt ctgtatgtct     13380
     tacaaaaaaa cacaagtatt aactaatatt aaggtaaaat aaatattcct aaaaaaaaca     13440
     tagaaaatta agtagtttgc tactgctaac tattcaattg tttatgtttt ttcttttctt     13500
     attaaaaaaa aacaaaaaac caaaaaaaat atttattaca tttaacttta ttttataaaa     13560
     actaaatagg tattattgta gtaaataatt gaaaaaacta aaaaacaaaa aaaaagtatt     13620
     agtagaatgt ctgwatgtct gtmtgtctgt mtgtctgtmt gtctgwatgt ctgtmtgtct     13680
     gwatgtctgt mtgtctgtct gtgtgaatgt ctgtcggtct gaatgtctgt ctgtctgtct     13740
     gtmtgtctgw atgtctgtmt gtctgwatgt ctgwatgtct gtmtgtctgt mtgtctgtwt     13800
     gtctgwatgt ctgtmtgtct gwatgtctgt ctgtctgtct gtctgtctga atgtctgcct     13860
     gtctgaatgc ctgtctgtct gtctgaatgt ctgtctgtct gtctgtctgt ctgtctgtct     13920
     gaatgtctgt ctgtctgaat gtctgtctgt ctgtctgtmt gtctgwatgt ctgtmtgtct     13980
     gtctgtctga atgtctgtat gtctgtatgt ctgtatgtct gtmtgtctgt ctgaatgtct     14040
     gtmtgtctgt ctgaatgtct gtctgtctgt ctgtctgtct gtctgtctga atgtctgtct     14100
     gtctgwatgt ctgtctgtct gaatgcctgt ctgtctgtct gwatgtctgt mtgtctgtmt     14160
     gtctgtmtgt ctgtmtgtct gwatgtctgt mtgtctgtmt gtctgwatgt ctgtmtgtct     14220
     gwatgtctgw atgtctgtct gtctgtctgt ctgtctgtct gtctgtctgt ctgaatgtct     14280
     gtmtgtctgt ctgtctgtct gtctgaatgt ctgtctgtct gtctgaatgt ctgtctgtct     14340
     gtctgtctgt ctgaatgtct gtctgtctga atgtctgtct gtctgaatgc ctgtctgtct     14400
     gtctgaatgt ctgtctgtct gtctgtctgt ctgtctgtct gtctgtctgt ctgaatgtct     14460
     gtctgtctgt ctgtctgaat gtctgtctgt ctgaatgtct gtctgtctgt ctgtctgtct     14520
     gtctgtctgt ctgtctgaat gtctgtctgt ctgtctgtct gaatgtctgt ctgtctgtct     14580
     gwatgtctgw atgtctgtct gtctgwatgt ctgtctgtct gtctgaatgt ctgcctgtct     14640
     gaatgcctgt ctgtctgtct gaatgtctgt ctgtctgtct gtctgtctga atgtctgtct     14700
     gtctgwatgt ctgtmtgtct gtctgtctgt ctgaatgtct gtctgtctga atgtctgtct     14760
     gtctgtctgt ctgaatgtct gtctgtctgt ctgtctgaat gtctgtctgt ctgtctgaat     14820
     gtctgtctgt ctgtctgtmt gtctgtctgt ctgtctgtct gtctgtctga atgtctgtct     14880
     gtctgatgtc tgtctgtctg tctgtctgtc tgtctgtctg aatgtctgtc tgtctgtctg     14940
     tctgtctgtc tgtctgtctg tctgaatgtc tgtctgtctg tctgtctgaa tgtctgtctg     15000
     tctgwatgtc tgtctgtctg aatgtctgtc tgtctgtctg aatgtctgtc tgtctgtctg     15060
     tctgtctgtc tgaatgtctg tctgtctgaa tgtctgtctg tctatctgaa tgtctgtctg     15120
     tctgtctgtc tgaatgtctg aatgtctgcc tgtctgtctg aatgtctgtc tgtctgaatg     15180
     tctgaatgtc tgaatgtctg tctgtctgtc ggtctttctg tttggttggc tggctgtctg     15240
     tctgtatgtc ttacaaaaaa acacaagtat taactaatat taaggtaaaa taaatattcc     15300
     taaaaaaaac atagaaaatt aagtagttwg cttactgcta actatttaat tgtttatgkt     15360
     ttttcttttc ttattaaaaa aaaacaaaaa accaaaaaaa atatttatta catttaactt     15420
     tattttataa aaactaaata ggtattattg tagtaaatta ttgaaaaaac taaaaaacaa     15480
     aaaaaaagta ttagtaggtt gtagtaacgt aaaataagta atatatattt taatttattt     15540
     ggtaccatta ataattatgc cttccgtatg gtacggataa acaaaatttt tggggaacat     15600
     ggagttttca aatttgtaca aagttagaca actcaagtcg actcgaaggt ccccaaaatt     15660
     gaattttggt ttgaaagacc ccgttgcaaa gcaacggcct cctcgtggtg ttccctgggt     15720
     accgatttta acatagtaat cgggagcaaa ttcgagcggc gaaaaacata catgaaggca     15780
     tatttatttt aaaktttggt ttctgagtaa cgggtatctg atagtcgagk tactcgacta     15840
     tagcgttctt ccttgt                                                     15856
//
ID   Helitron-2_DVir repbase;    DNA;    INV; 9141 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   19-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   Autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; Helitron-2_DVir; Helitron-2N1_DVir;
KW   helentron.
XX
NM   Helitron-2_DVir.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-9141
RA   Kapitonov V.V. and Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 132-132 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a consensus sequence of a family of autonomous Helitron
CC   transposons transposed in the Drosophila virilis genome a few
CC   million years ago (copies are less than 5% divergent from the
CC   consensus sequence). The Helitron-1_DVir consensus sequence
CC   encodes the 2059-aa Hel-2_DVirp protein composed of the REP, HEL,
CC   and apurinic endonuclease domains. Helitron-1_DVir elements and
CC   non-autonomous elements transposed by the Helitron-1_DVir
CC   enzymatic machinery (e.g. Helitron-2N1_DVir) are usually inserted
CC   in the TTT|TTT target sites without the target site duplications
CC   (the insertion site is marked by "|"). Different families of
CC   Helitrons constitute ~5% of the D. virilis genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           2729..8905
FT                 /product="Hel-2_DVirp"
FT                 /note="HUH nuclease, DEAD-like helicase, and
FT                 apurinic-like endonuclease."
FT                 /translation="MPRASKKSANQRRQDAINRSRVYYIENTESVCLRNSQ
FT                 RLADTRECNGDIREVERNTDALARSKRRSARFRQDERDLDAAARATQRQDE
FT                 DVRALEQTQNTADHAVRRQNLEYRTLERERDAEAHATRRQDLEIRLQEQEL
FT                 NTVEHTVRRQNVEYRESERQRDAAAHVTRRQDLEIRLQEQEINTVEHTVRR
FT                 QNEEYRASERIRDASAHVARRLNVNVRELEQDANTVQHNIRRQNEAYRTRE
FT                 RERDVLNRRNARQNIIARRREQVVNSSQRRVTRNQDRIRENELRNMAEARV
FT                 INFRNSFQNRAIQSAQQSQRNRDAREEMSTEQREQQRDLQRQRRVFSARDK
FT                 YLENIKKGPTEICISCGGTWFPFQVKLLNKINLSAKFPNMDISKAFYLSNK
FT                 FPSLSEDYLFCSTCRRHISSGKIPSLCLSEGFNFPEIPDCLKDLTCLEERL
FT                 ISPRIPFMRIISLGYERQCAVRGAVVNVPISVSETVTALPRTFENSHVVQI
FT                 HLKRKLEYAHNFMTETIRPARVLEALRYLINRELYLKHNISVASNWLGVNA
FT                 HNEEVPFVADPADITAVDSLLRCRMETDSEGHDTSDLNPGGQETLLDNESI
FT                 ENNAIIGRIAMAPGEGRRPIDMTTDEDAEELSFPTISCGEICKSKSTYCRK
FT                 AKSQIRYYDRRCAKVPKILYMYKCYELTRIKSSISICLRKKSRNANITVGN
FT                 LRDEGFVSNLVQHDDGYHVLKGLRSATAHWEAEKKKVLAMIRQFGLPTFFI
FT                 TLSAAETKWSELLVILSLILDNRVLSEEEAANLSSSEKARLIRSDPVTCSR
FT                 YFDYRFRQLLKLFKTDIFGEYQLSHFYWRIEFQHRGSPHSHGMYWLSSAPK
FT                 LNENSSQSSRQVIEFIDRFITTNGDNPDLEEVIKYQQHRHSFSCQREINRH
FT                 KICRFNMPYPPMPQTEILYPLEEGDSNLRRHQDMWKKIKELLDSSVSDAEA
FT                 LSLNNFDSFLAHINTDYIGYKFALRSSLKKPQIFLRRKYCDKMLNAYNEDI
FT                 LKLYRANMDIQYILDAFACCSYIINYINKSNRGVSQLLREAMNEISSNNIS
FT                 VKQKLQHIGNKFINGTEISAQEASYNILGLHMSGCSHGEIFVNTSHPDQRV
FT                 GMVKAQRDLETLPSDSKDYFLPNLLDHYVQRPDELNNLCLADFAAKFKYSK
FT                 SLNAHSTGDYEEENDDEEREDNANDGSPMVLKNRSGILRERRHSLILRWRR
FT                 YSINISRSDYFRELVMLFFPWRNEQVDILSTDNEQTFNAQFQIIESNRKRY
FT                 EYLDEAHFQEVLDEIQEVNNDNNDGQEISASQLLDEEFRGFAVPEVARNIN
FT                 VFEDNVHEGNSDENAIRMIKLPAQVPENELNLMVRSLNSKQRQYYAHFMHN
FT                 MNVMQIFYDYVGGGAGVGKSRLISTIYQSLTLRFNTRVGCDSDSAKILLCA
FT                 PTGKAAFGIGGLTLHSVFSLPVNQYSMELRPLSNDAINTMHSKLIDLKLII
FT                 IDEISMVGAKMLSYLDLRLKQIFRNNTYFGGISILAFGDLKQLPPVGDRWI
FT                 FAPNSRDPYSIILGAPLWDLFQYFELTEIMRQREDCAFAIALNNMSEGKMT
FT                 DTDKLLIQQRIVLPSEINNIPNDAIRLFYSNQKASDYNNIRLSQIIIEEYT
FT                 SKSKDMLKTKSISERNKLNILENIKAFKTSETQGLPYLLKLKTTAKYMITV
FT                 NINTNDGLVNGASGQLMHIDYTASVSDVLVSTLWLKFTEATVGAQARAKKT
FT                 NPLHSDWTPIERVLRTFQYRKNDQVTIERLQFPLVPAEAITIHKSQGATYK
FT                 KVAVHLQDGISRAALYVACSTATNASGLFLIGKFNPPREIQATDPVYIELE
FT                 KLRGEKKLTTHHQIYFERVEGNILTYFHNIEGLHNHSLDISNDFIIKAADI
FT                 LCFVETWSREGQVYNIDGFDILGRIDGSMCTGSTRPPGGIIVYAKSYIAQS
FT                 AEILSVVNINLEHNKVCQILIFQHLDTKYVVVYRNPSFSFSEFRKLFLEHL
FT                 EQELDRHSKIVILGDFNSCRARVRDQLEIRLNELGISSLLRGVPTTKQLTE
FT                 IDWVFSTNGLDNKRAQVYETAYSYHDGIFVFNS"
XX
SQ   Sequence 9141 BP; 3007 A; 1615 C; 1778 G; 2739 T; 2 other;
     ttataccctt gcagagggta ttataatttt gtcgtgaaat gtgtaacgca tagaaggaga        60
     catctccgac cccataaagt atatatattc ttaatcagca tcaacagccg agtcgatata       120
     gccatgtccg tctgtcgttt ctatgcgaac tagtccctca gttttaaagc tatcttaatg       180
     aaactttgca gaagtcccta tttctgttgc acgcagcaca tatgtcaaaa ccagctggat       240
     cggaccacta tatcatatag ctgccatagg aacgatcggt cgaaaattaa gttgttgtat       300
     gaaaaaaatg ttttttttca agatatctcg aacaaactcg gcatttatta atgttactat       360
     actactcata tatatgcaaa atyctattaa gatcggacca ctatatcata tagctgccat       420
     aggaacgatc ggtcgaaaat taagtttttg tatgaaaaaa cattttgttt ttcaagatat       480
     cttgaccaaa ctcggcattt attagtttta ctaagctcct catatatatg caaaatccta       540
     ttaagatcgg accactatat catatagctg ccataggaat gatcggtcga aaattaagtt       600
     tttgtatgaa aaaagatttt gtttgtcaag atatcttgac caaactcggc atttattagt       660
     tttactaagc tcctcatata tatgcaaaat cctattaaga tcggaccact atatcatata       720
     gctgccatag gaacgatcgg tcgaaaatta agtttttgta tgaaaaaacc ttttgtttat       780
     caagatatct tgaccaaact cgacatttat tagttttact atgctcctca tatatatgca       840
     aaattctatt aagatcggac cactatatca tatagctgcc ataggaacga tcggtcgaaa       900
     attaagttgt tgaatgaaaa aattgtttgg ctttcacgat attttgaaca aacaaatttk       960
     tttcctgtgc ctcttagata tgagcattat gagtcatcag tggaatgata attaacgtcg      1020
     gagtaatata agctcttttt gttatttcta caagtggttg atttagaatg tgttcagaaa      1080
     ggaggctaaa aagcatacgt ttttcagcaa aaaagttgcg cttaagtcaa atattcgcaa      1140
     acgtttgtga aaattcgggg tttgtagtta tattgcagaa gaataattta attgtaatac      1200
     aaaagatcgg tatttattat gttaccttaa gcatttcaaa tataaatagt tacgcgcgca      1260
     ctattcagtg ttacaatgag ctttttcaat aggtagtacc ttgcccgaaa tgaaaaattg      1320
     agagtgcatg ctttgcaaca tattttaagt aatcgatttt cgattctcgc tgtaaaaagt      1380
     ttcactgaga agccctaaaa ataattgtcc catggaatta aattttaaaa tggtaatcaa      1440
     ggaaggaatc gcttctgacc ccataaagta tatatattct tgattaggac ggcaagctga      1500
     atcgactaag taatatccgc ctacctgttt ttctgtctgg cggtatgtca tatgtattat      1560
     ataagttatg ttcacatata tatataaatt atatatgttc aaaaattggt caaattacct      1620
     atacatggaa gtcctatcgt aaatctattt ttaatctata taaacaaatt aaaatatgtt      1680
     gttttatgtt ttaatattat ttaatttaat attatttaca tttatgaccg aagcgcaaat      1740
     acattaagtt gtatattcgt aatatatata aatatatatc tacacttacg cataagtatg      1800
     tatgctttta gttatacaac cgtaatataa aactattata ttattgattc gataatgatc      1860
     ttttgcattc aaatgtcgct ggaagtgcgc gcaatgaaat gttcagtgaa ctttcaaagg      1920
     gagcttttga aaaagcgaat tcgcctatta tcaggcgaga caaacgaaat tgccattcac      1980
     tcttcaacca accatcgatt tgtgcggtcg tcgattctcg attgcgatta cgattctaag      2040
     aatttgcgtt tttcttagat ttaaaacaaa tcaaacttaa tattcgttat aataagatcc      2100
     agtgcaactg aaattaaata attcttcggt tatttcagtt ctttgaagaa tatttaatat      2160
     aacaatctat aatcgggttt gccgcgaaaa atcggcaatt attccccgcc agtgctagtg      2220
     aacatttgtg tgtgtatgtg tgcgttgtga cctcacctcc cccttagact aacaacctgt      2280
     gtgtgtgcgt gtgtaaacat tttgtgcaag agtgtgaggc gcacttgcta gcggtggacc      2340
     aataatacgt gagtgttggt gttcgtgtaa gcgttgtgac tctggcattg ctttgcaata      2400
     tattttctgg atgtttgcac tacacctgtt gtactggatt ttatctaact ggaaaaatcg      2460
     caagtttatt cgaaaagctt agatagtctt tttaaagact tattgattta taatattttc      2520
     ctttttcaat acatatttat atatatttaa atataataat atatatatat tcaaactaac      2580
     aattaaatta tcaaataagt taatattata attattttct ttttcagtat ctatcttaag      2640
     tttcgattca tatttaatta ttctttgtta tcttaacata actttaattt tcgaaatatt      2700
     tgggaataat ttcttcagtt tttttaaaat gccgcgcgcg tctaaaaaat ccgctaatca      2760
     aaggcgtcaa gatgccatta atcgtagtcg tgtctactac atagagaata ctgaaagcgt      2820
     ttgccttcga aattctcaac gtttagctga cactcgtgag tgcaacggtg atattcgtga      2880
     agtagagcgt aatactgacg ccctggcccg atctaaaaga agaagtgctc gatttcgaca      2940
     ggatgaaagg gatcttgatg cagcagctcg cgcaacgcaa agacaggatg aggatgtgcg      3000
     agctctggag cagacacaaa atacagcaga ccatgctgtt cggcgacaaa atctggagta      3060
     ccgtacccta gagcgtgagc gcgatgcaga agcccatgct acaaggagac aggacttaga      3120
     aattagactg caagagcagg aattgaacac agtggaacac actgtgcgtc gccaaaacgt      3180
     ggagtaccgc gaatcagaac gccagcgaga tgcagcagcc cacgttacaa ggcgacagga      3240
     tttagaaata agactgcaag agcaggaaat taacacagtg gaacacactg tgcgtcgaca      3300
     aaatgaagaa tatcgtgcat ctgagcgtat acgtgatgct tctgctcatg tagcgcgaag      3360
     actgaatgtt aatgttcgag agctagagca ggacgctaat acagttcaac ataacattcg      3420
     tcggcaaaat gaagcatatc gcactagaga gcgtgaaaga gacgtcttaa atcggcgaaa      3480
     tgctcgtcaa aatattattg caagacgcag agaacaagtc gtcaattcct ctcaaagacg      3540
     agttactaga aaccaggatc gtataagaga gaacgaatta cgaaatatgg ctgaagctcg      3600
     agttataaac tttagaaata gttttcaaaa tcgtgccata cagtcagctc agcaatctca      3660
     gagaaataga gatgctagag aagaaatgtc aactgaacag cgcgagcaac agcgtgactt      3720
     gcaaagacag cgtagagttt tttctgccag agataaatac ctggaaaata ttaagaaagg      3780
     ccctacagaa atatgcatat catgcggagg aacttggttt cctttccaag taaagctttt      3840
     gaataaaata aatctatcgg caaagtttcc aaacatggat atttcaaaag cattttatct      3900
     gtccaataag ttcccaagtc tatctgaaga ctatttgttt tgctccactt gtcgccgaca      3960
     catatcgtcc ggcaagattc cgagtctctg tctgtccgag gggttcaact ttcctgagat      4020
     tccagactgt cttaaagact taacgtgtct tgaagagcgt ttaatttcgc caagaatccc      4080
     atttatgcgg ataatttctc ttggctatga gcggcaatgt gcagttagag gagctgtggt      4140
     caacgtacca atttctgttt cggaaactgt gacagctctt ccgcgcacct ttgaaaacag      4200
     tcatgtagta caaattcatt tgaagcgtaa gctggaatat gcgcataatt tcatgactga      4260
     gacaattagg cccgctcgtg tgctcgaagc gttgcggtat ttaataaaca gagaattata      4320
     tcttaagcac aatatttcag ttgcttccaa ctggctaggt gtaaatgctc acaatgaaga      4380
     agtccctttt gttgctgatc cagctgatat aacagctgtg gatagccttc ttcgctgccg      4440
     aatggaaaca gattcagaag gacacgacac ttctgatctt aatccaggtg gacaggaaac      4500
     tttgttggat aacgagtcaa tagaaaacaa tgctataatt ggtcgtattg caatggctcc      4560
     aggtgagggt cgacgaccaa ttgatatgac gacagatgag gatgctgaag aattatcgtt      4620
     cccaaccatt tcatgtggcg aaatttgtaa aagcaaaagt acttattgtc gaaaggccaa      4680
     atcacagatt cggtattacg atcgtcgttg cgcgaaagta ccaaaaattc tgtatatgta      4740
     taagtgttat gagctcacac gcataaaaag ttctatttct atctgccttc ggaaaaaatc      4800
     aagaaacgcc aatatcaccg ttggtaactt gagagatgaa ggttttgtca gcaatcttgt      4860
     gcagcatgat gacggatatc atgttcttaa gggcctgcga tctgctacag cacattggga      4920
     ggctgagaag aaaaaagtgc tggcaatgat tcgtcagttt gggctaccaa cttttttcat      4980
     aacgctttct gctgctgaaa ccaaatggag tgagctgttg gtcattctat ctctcatttt      5040
     ggataataga gtccttagtg aggaagaagc agcgaatctt tcaagttccg aaaaagctcg      5100
     actaattcgg tctgatcctg tgacttgctc aagatatttt gactataggt ttaggcagct      5160
     gttgaaatta tttaaaacag atatttttgg agaatatcaa ctctctcact tttattggag      5220
     aattgaattc caacataggg gatcgccaca ttcacatggc atgtattggc taagcagcgc      5280
     tcctaaactg aatgagaata gttcccaaag tagccgtcag gttatagaat ttattgacag      5340
     attcattaca acaaacggag ataatccaga tttggaagag gttattaagt accaacagca      5400
     cagacatagc ttttcatgcc aaagagaaat aaataggcat aaaatttgtc gttttaacat      5460
     gccataccct cccatgcctc agactgagat actatacccc ctagaagagg gagattcaaa      5520
     tctgagaagg catcaagaca tgtggaagaa aatcaaagag ctactagata gttcagtttc      5580
     ggacgctgaa gccttaagct taaataattt tgatagtttt cttgcacata taaatacgga      5640
     ttatattgga tataaatttg cactgagatc gagtcttaaa aagccgcaaa tatttttgcg      5700
     tagaaaatac tgtgacaaaa tgttgaatgc atataatgaa gatatattga agctatatag      5760
     agccaacatg gatattcaat acatactaga tgcgtttgct tgttgtagtt atataataaa      5820
     ctacataaac aaatcgaata gaggggtttc tcaattattg cgagaagcca tgaacgagat      5880
     aagtagtaat aacatttcag ttaagcaaaa actacaacat atcggcaata agttcatcaa      5940
     tggaacagaa atatctgcgc aggaggcttc atacaacatc cttggactcc atatgtcagg      6000
     atgtagccat ggcgagattt ttgtaaacac ttcgcatcct gatcaaagag ttggtatggt      6060
     gaaagcccag agagatttag aaacactacc ttcagattca aaagattatt tcttaccaaa      6120
     cttgctagat cattatgttc aaagaccgga cgaattaaat aatttgtgcc tagctgactt      6180
     tgctgccaaa tttaaatatt ctaagtcgct aaatgcccat tcaacaggag actacgagga      6240
     ggaaaatgat gatgaagagc gggaggacaa tgccaatgac gggagtccca tggtactcaa      6300
     aaatagatca ggaattttga gagaacgtag gcactctctt attcttcggt ggagaaggta      6360
     tagcataaat atatcccgat ctgattattt tcgagaactt gtaatgctct ttttcccttg      6420
     gcgaaatgag caagtggata ttcttagcac cgataatgag caaacgttca atgcacaatt      6480
     tcaaatcatc gaatcaaata gaaaacgata tgaatatttg gatgaggctc attttcaaga      6540
     agtcttagat gagatccaag aagtcaacaa tgacaataat gatggacaag aaatttcagc      6600
     atctcagttg cttgatgaag aattcagggg atttgcagta ccagaagttg ctcgaaacat      6660
     taacgtattt gaagataatg tgcatgaagg caactctgat gaaaatgcaa tccgaatgat      6720
     taaattacct gcacaagttc cagaaaatga gcttaattta atggtgcgat cacttaacag      6780
     taaacaacga caatattacg ctcactttat gcataatatg aatgttatgc aaatatttta      6840
     tgattacgtt ggaggtgggg cgggtgttgg aaaaagtagg ctgatatcaa ctatatatca      6900
     gtcactaact ttaagattta acaccagagt tggttgtgac tctgattctg caaagatatt      6960
     gctgtgtgcc ccaactggca aagcagcctt tggaattggt ggactcactc tccattccgt      7020
     gttctctttg cctgttaacc aatattcaat ggaattaaga ccccttagca acgacgcaat      7080
     caacactatg cactcaaagc ttatagactt aaagcttatt attattgatg aaatttcaat      7140
     ggtgggtgca aaaatgttgt cgtacttgga tcttcgtcta aagcaaattt ttagaaataa      7200
     tacatacttt ggcggaattt caatattggc atttggtgat ctaaagcagc ttccaccagt      7260
     tggcgataga tggatttttg ctccaaactc gagagaccca tatagcataa ttttgggagc      7320
     accactttgg gatttatttc aatattttga attgaccgaa ataatgcggc aacgtgagga      7380
     ttgcgccttt gccatcgcat taaataatat gtcagaagga aaaatgactg acacggacaa      7440
     gctgcttatt caacagagaa ttgttttgcc ttccgaaata aataatattc ccaacgatgc      7500
     tataagattg ttctactcaa atcagaaagc gagcgactac aataatatcc gacttagcca      7560
     aattattatt gaagaatata cttcaaaatc taaagatatg ctgaagacca aatcaatatc      7620
     tgaaaggaac aagctaaata ttttagaaaa tattaaggca ttcaagactt ccgaaaccca      7680
     aggccttccc tatctgctta agctcaaaac cacagctaaa tatatgatta ccgtcaatat      7740
     aaataccaat gatggtttgg tcaatggagc aagtggacag cttatgcata ttgactatac      7800
     agccagcgta tctgatgtgt tagtttcgac gctctggctt aaatttacag aagcaactgt      7860
     gggagcgcaa gcaagagcaa aaaaaacaaa tcctttgcac tctgattgga caccaattga      7920
     aagagtttta agaacatttc aatataggaa aaatgaccaa gtaacaattg aacgcttgca      7980
     atttccattg gttcctgctg aagccataac catccacaag agtcagggag caacctacaa      8040
     aaaagttgca gtgcatttgc aagatggcat aagccgtgca gcattatacg tagcttgtag      8100
     cacagcgact aatgcatctg ggcttttcct tataggaaag tttaatccgc ctagagaaat      8160
     acaagctacc gaccccgtct atattgagtt ggaaaaactc cggggcgaga aaaaattgac      8220
     cacccaccat cagatatatt ttgagagagt agaaggaaat attttgacat atttccataa      8280
     tattgagggc ttgcataatc atagtttaga catttcaaat gattttataa taaaagcagc      8340
     agatatttta tgtttcgtag agacttggag tagagaaggc caagtatata atatagacgg      8400
     ctttgacata ctcggtcgaa tcgatggtag catgtgtaca ggtagcacta gaccaccagg      8460
     tggcataatt gtttatgcaa agtcgtacat tgcacaaagt gctgaaatat tgtctgtggt      8520
     aaatattaat ctggaacata ataaagtttg ccagatcctt atatttcaac acttagatac      8580
     caaatatgta gttgtttata gaaacccgtc cttctccttt tccgaatttc gtaaattatt      8640
     tttagaacac ttagagcagg agcttgatag gcacagtaaa atagttattt tgggagattt      8700
     caattcatgc cgggctagag ttcgagacca gttagaaatt agattgaacg agcttggtat      8760
     atcatctctt ttgcgtgggg tacctacaac aaaacagcta actgaaatag attgggtatt      8820
     ttcgactaac ggactggaca ataaaagagc ccaggtgtat gaaacggcat atagctacca      8880
     cgatggtatt ttcgttttca atagctagga aacttttgat aaatttatct tttgtgtgat      8940
     ggatcaaaaa catatatata tatatatata tatatatata tataaatatt cttcggctgt      9000
     tcgctctcga tcacatattt ttttttgaca tggacatgga gggaagccag accaaaaagc      9060
     ttaaattcgc acttaataga aaagcttcgg tctgcaaggg tattaaatct tcggcgtgcc      9120
     gaagatagcc cttctttctc g                                                9141
//
ID   Helitron-2_FoCa repbase;    DNA;    INV; 7671 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-7671
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2488-2488 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. Several bps of target can be
CC   included in the consensus.
XX
SQ   Sequence 7671 BP; 2331 A; 1543 C; 1676 G; 2121 T; 0 other;
     tttttctatt ttttcccatt tacttgcatg actcatggaa gtatatgtga aacatatagt        60
     atgcaatcac ttaagggcaa tgttaatttt gtttggtcgt ataggccgac tttttaagct       120
     agatggatgc ggttagtggc attcgaacaa gctcaaaaat gtaggcatag ggtacgcgaa       180
     ccgtttttgg aaattttgat tactttttta tcttttcacc ttcaagtgta aatgggcact       240
     agggacacta aatatttttt caaatgggct gggtgaatga gaatgaaaat ctgattgcgg       300
     gatattgtct acagggccta gggctacaac aaatgtttga aacatttttt aaaatagggc       360
     ctcctatacg cgcgaaaatt caaaatgttg aattttgggt ggcttcagtc tgacaggggt       420
     acagactggg gggattaata ttttgaactg gaaagatgtt cattgtgttc ctgagggtcc       480
     ctaggggtgc ccttaaagga ccactttttt cgaaatcgca cttaggtgaa aagttatggc       540
     ggtgtgaaga tgtgagaggg ttagtcattg aggaggagat cctccctaat tgtccatctc       600
     acatttcgat gtactatgga tatatggtag tacaccatga gtgtacaaaa atctttgttt       660
     gactccatgg ccccattggt gcccccatcc ccccacaccc tcaatggggc aaaaaatgcc       720
     aaactcacgt gttccaaacg tttacattca gttttgttcg ggttttgcaa attctggcca       780
     taatattgta gcccaaatag ttttagtatc caatgaactt caattagatt tcatacttac       840
     atattatatt caattccaaa gttaaccttt atcaattttt gatgtataat attttctata       900
     atatttatta acatatatgc atatgtatgt agtattaatg atattataat attttctcat       960
     catgggtgtc ttcgtttgaa tgtgttgtga gtctcccttt accccatgaa ttcgcggtat      1020
     aaggaaagtg gtgtgtttac ctgcacgact gttgcttcac atgtcattgc gaagaatata      1080
     attgttttta tatttatcga agtatttaat taaattcaac ataataaaag cgattaatta      1140
     cacgtcaagt tcacaataaa cacaaacgat gccatctaga caaagaaagt tacgaaagta      1200
     caagcacgat atagcaaaca agtgcaaaat tcagaaggac acaaaaacca tacaagaaga      1260
     aagtattgat gtcgaaaaga tggaaataga ccccactgag gttgaactgg ccctgtcacc      1320
     tcaccaacaa ctcttcatca ggaatatcaa ccaagttgca aaccggacat gtttcatttg      1380
     caatcgtctt tggtacgata agggcatcag gttagcgtaa aagaaaatat aatgaaacaa      1440
     aggaatcatg ttaatcggca ccaaatttat ttttacttta aattttgcag ggttttgtca      1500
     gtaactgaag gaattcgaag agtcctgggg tcagtggcaa ataggtacga cagtaatacc      1560
     ttggaacatc tcgttccaac tactggagac caaatagatt gctgccatcg ttgccatgac      1620
     aacctgaaca aaggaaaagt tccagcaacc gcaatggtca accacatgta tgtcccagag      1680
     tcacccaacg ttatcagtat tttgacggat gtggaggcaa ggatggtcag tcgtgcgaag      1740
     gcctttctta aaatccacaa attgagtcga ggacgaggac aagttgctct tcaagggcag      1800
     gtcatccact ttgcccaaag cgtggaggaa gttcaggagc agttacgcct cgggccgaac      1860
     acatcaaacg gcacaataat tgtcacggaa tcagttggag actttccaca ttcctccata      1920
     tttgatataa ggcctcaagg tagagcaatt taaatcacta ctcaattttc ttagtacata      1980
     atgttaattg tattggtttt agtacttcgt gaagctctag agtggttgct cataaataat      2040
     cccggatact caaacgtgac aatggaggag ttcaacctgg acggtattcg gcttgaagat      2100
     gccgttgtag cacagaacga aggtgatagt tatccaacac cagatgtgac tgataggaag      2160
     ggaaggccac gcatcgaggg tggatatgtt ccaattccaa gaaaaccgtg gatgatggca      2220
     atgcggctga gcttctgtca aacctccaag cgatttctaa aagcaggaac tggaggaaaa      2280
     caatgcactg caatgtctgc tgccgctgtg gcgtatgctg cagtaaaatc tccgggtact      2340
     tggacaatac aagatggaga ccggatgttg acggctggtg actactacta ccagaaatgt      2400
     cgcaacagga ttataggtat gtggaatatt cgtgctgaga tattgtgatt gagtggtaaa      2460
     tttcgtgttt acatacagaa aggaacgcaa ctaatggtga aggccgcgca cagattgttg      2520
     catacgacta tttaaaccct gatgagatcg agggacaaat tgcaaatgtt tttggaaaat      2580
     ctgttagtat aagcttggtg gacggaggta ttgtcttcta cgctgcgttt gaaaggtgga      2640
     tggcagaagt agaagactat gcgaagaggg cgctagccag tgccattgag gatttcgtct      2700
     cgagcaactc agactacgcg ttaattactg gtggttcgta taatcacaaa tactgccaac      2760
     atgtttccat tacaaaaatt taaaataatc ccatcccgta ggtcaataca caatgggcct      2820
     aagcaaaagc gatggacatc tctactattt tgacagtcac gctaggactc aacaaggcat      2880
     gatttcaaat gcagcaactc agcaggcttt aattttaaag ctacgccaat gtcaagaaag      2940
     ctaccatcat ctttgcaaaa tagtcaacaa caattgtgtt caaagcctaa atgctgctgt      3000
     tcttaccgta actcctctga atattacaat tcgtgaagac ataaatagcc catcggaagt      3060
     tgaagagata gataatccca atgacatgca tgctgcattt ggcgacgagg cacaagaaga      3120
     ttgcctcatc cacaatattg acttccttga gcctcggttg gacagatttg ggcagagtag      3180
     agaagaacaa ttgcaagaag atgtgaccga tctcgtttgc actagctctt gcaacttgca      3240
     agaaaatgtg aatcttcata ggacggctgc tccgccaatt aacgtgcgtt acgaaattca      3300
     tttggaggag aaatgcttca ttcaatgttt cccccacgga caatacggtt tggacgaaaa      3360
     tagagaccaa gatcacgctg ctaaattaac gcctcacgca tactttgcga ccagagtgat      3420
     gtcagccgat cgtcgatttc gtcgtaatga ctatctcttc tatgcacttt caaggtcgga      3480
     acaatctatc atggattcca aaattgccgt ctgcgccaac atgaaatttc aagaccagga      3540
     aaatgagaat gctccggtgg cagaaaatat tcatttgtac atgagcgcca tccgtggttc      3600
     caagtcgtac tggaagaaat acacaggaga tatcatggca atggtgacaa gacttggtcc      3660
     acctacgttc ttccttacag tgtctactga tgatattggt tccgctgata ttctcactgc      3720
     aatgtggagg gcatcgcgtg acgaacctgt tccagccaat attcagaatt tgccgtatga      3780
     cgaacgtcgg gagctattaa actccaatcc cgtggcagcc gcacgtcatt tcaaccttag      3840
     gacccaggaa ctgataaagt tactgaccaa tgatccaaca atatttggaa agccggtggt      3900
     cgactatacc ttccgtgttg aatttcaaga ccgcgggagt ccccatctac actccctcat      3960
     ctgggtagaa aatccaccag attttgctac cacagaaggt atcgaattca ttgacgccaa      4020
     tgtttcatgc agtctccatg gtgaaacaga aattggggac ctggttagac gttaccaaac      4080
     gcacaaaaat acacctacat gcttcaagaa aggtagcaca tgccgcttcg gctttcctcg      4140
     acctgtaatg gctgagacaa gtttaacatt ggacgaagac agcaggaccc gaggacgagg      4200
     catcatctta cgaagaaatg aagatgagat gtggattaac aattatcatc cgaaactcct      4260
     ttggctcctc cgttgtaata tggatataca gcccgttctt ggggttgcag cagtagccct      4320
     gtatatcgct aaatatattg gtaagaatga accggaaacc ttccgcgaag atattcgccg      4380
     cacaattcaa accttgaggg aaggtaatca tccgattcgt tatcagatgg agaaagtttc      4440
     ccgaattctt ttgaatcggc ggactttatc gtctcaagag tgtgctgcca gaatgtgtaa      4500
     tatcccaatg cggttttcgt cgcgtagctt cgtcttcgtt cccaccttcc gtccttggga      4560
     tcggataaga atgcttcgaa aggatgcatt tctgaatggt gacgaagtaa aatttgctag      4620
     gtaaatgaca atattgtaat cataaatatt tgccttttaa tgctaatcat aaaattaaat      4680
     tttgttttaa ctctagtaac ataattgaca aatattgtga acgcccggat gatcttggca      4740
     atatctgcct ctttgaattt gcttcgaaat atcaaccatg tcgaagttat gtgcaaccag      4800
     atgaggattt ggttgaaggg tttgaggagg aaattctgcg aagacaaaga ggttctcggg      4860
     ctttctacct aagagacaga agcatgggta tgtggaaaaa gagagaaacc ttttccatag      4920
     tcaaaagccc atctttccat agcgacactg atgcagccaa ttttatctac gcgcacattc      4980
     tcctatacat tccattcaga aatgaggagg tagagctgct aattccaggc gaatctgtgc      5040
     aggagactta cgaacgacgg aagagcgata tgaggacaaa tgaagatttt cacctcatcc      5100
     gtccggagat ggcgacagca ttggaggctg ctatagacaa aatttcacat gatcgagatg      5160
     cccaacttca aaatgacctt gctgaggacg accatttcct ttacttcccc gatgttgata      5220
     atgcaagcaa cgttttgatg gcaccagggg acgaatatca aatccctttc atggacgaag      5280
     aaagcttcga aactgaattg gccaaaatga accctgatca aaaggagatc tacgatctca      5340
     ttcagcagtg tttggatgat caaggacgag tccaacttaa gttgttcatt actggtgctg      5400
     ggggaactgg aaagtcgttt ttgatctctt tactgactaa cctcattccg ataaaggaag      5460
     gcggtcctgg actggacggc gtagtgcttg ctgctccaac aggagttgca gctctgaata      5520
     taaacggtca gaccctccat cgtacatttc atctggccgt agaggcaggg tctgtcccac      5580
     actacgccaa actaggagct caaatgctac agcgtatgcg cgaaaaattt aggaacgttg      5640
     agtggatcat ccttgatgaa gtttcgatga tttcctacga ggtgaggcaa atgtatcatt      5700
     aattatattt cgtattaatg atggtccagc ggtaccatga atagtaagaa ttactatttt      5760
     taattaggta ttccggcaga ttgatcatcg cctgtgcgat tgttttgatt ctgagatgcc      5820
     gtttggagga aagaacgtta tctgcgttgg ggatctcttc cagttggaac cagtgaatgg      5880
     acactgcatc tacgaaacgc cgcgtctcta tctaggagaa gccaacattt ggcatgcttt      5940
     tgagtttcgg gaattaacgg taaacatgcg tcaagtgaat gatcccctcc ttcgaatatg      6000
     taaccatcta cgtgaagcaa atctcacaag cgaagacctt gagatcttaa gaaccaggga      6060
     gttaaaggat gccaaccctc tggagccaaa gatgaaagac atgcaagaga agtttaagaa      6120
     ttccatccgt atctatgcaa cccgtgccca agtagcaagc tacaatcgcc tgcggactag      6180
     acaacttcgc gatgacaaaa gtataaatgt ctacaccatt cgggcaaggg acaccttcaa      6240
     ctctggacca aatgttggat gccaagcacc tctatcccgt agttctagag acagcaataa      6300
     atgcggagga tttcctgctt ccatccaact agctgctgga tctagaatta tggtgatccg      6360
     aaattccacg acaacgcgat acctggtcaa tgggtcaatg gggaccgttg ttgggttcac      6420
     ctggaatatg cttgcaagag aacaacaccg ttctggtgac ctacccgcca ccgtacaagt      6480
     aaagtttgac gacccaagga tctgcggaaa ttcagatggt atcttcgatc tccgacctga      6540
     agacgtcgtg tacaacaacg gacgcggggg tgaagaaata cggcgtcgaa tgctaccgat      6600
     agtgctttgc tgggcagtca cggttcataa ggtacagggg ataacagtgg acactgccgt      6660
     aatatatctt ggaccggagc tctttgctca cggacaagct tatgttgccc ttagtcgtgt      6720
     ccgaacactc gatggtgtag ctattttaca gcaagacgat accaagttgt gccaagaact      6780
     aaatcaaaag ctggtagcgg aaatgagaag gcttagggat aaacttcttt aatattgttt      6840
     actttaaata tataatcaaa acaacaattg ccaaaatgta tttagctaat ctgaaataaa      6900
     tagcttgagc gaagtgaaca atgaggtaga taaaaattgg taaataattt agcggtaaaa      6960
     ccgcaggaaa acctattttt tcatttcctg ttccatgtct aatttcattt cattcagttt      7020
     cacagtatca aaattgagag gaaatgcgag aaacaagatt ttttttcaaa tatcggtact      7080
     acccaaattg ggtactaccg atatttgatg gtggggaaaa ataggcgcaa attttggcaa      7140
     atgtattggc tcatttggtc catctcatca acccccctaa cctctgaaat tcatcaacat      7200
     cccaatatcc attgtcatgg tcgatcggtt actcaatgtg caggccttaa ttttcaatgt      7260
     ctaagtgata tgtcaaatgt cctacaatct ttaaattcaa ctagaggcgg gatcgcacca      7320
     tataattcat acttgtcgag attgaggaat ataggtcaag ttagattaga ataggttagg      7380
     ccataataaa aatgtttaac cagtgaaaag ttttgcatga agcatcacaa ttgcaattag      7440
     ttaaaataca aaattaagaa tgtagtttcc ggagtcaata tttgcgccta tttttcccca      7500
     ccatcaaata tcggtagtac ccaatttggg tagtaccgat atttgaaaaa aaatcttgtt      7560
     tctcgcattt cctctcaatt ttgatactgt gaaactgaat gaaatgaaat tagacatgga      7620
     acaggaaatg aaaaaatagg ttttcctgcg gttttaccgc taaattattt t               7671
//
ID   Helitron-2_HMM repbase;    DNA;    INV; 7486 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-7486
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2636-2636 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. The 3' end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           2573..6625
FT                 /product="Helitron-2_HMM_1p"
FT                 /note="helicase."
FT                 /translation="MNHLCNNCQAQKWKTEAPGLCCSNGKVDIPKIPEPTP
FT                 VLKELLLGSHPRSKHFLSHTRHYNTLFQMTSFGATEIREGNFMPTFKIQGQ
FT                 VYHLIGNLLPAEGEKSEFLQIYFVSLADQLSLRSNINPNLRTDLINPLQKE
FT                 LHDYNSYIQSFKYNLENRPLQDLKLIIHADLKPPNEHRGRYNAPTVDEVAI
FT                 LLVDEDKGPRDIVLSTRDGHLQRVSELHRAYDPLQYPLMFPRGNNGYCVNI
FT                 QQQNVAARSKTVSCMQFYAFRLMVRANDINSLHYFRGLLNQYCVDMAAKMI
FT                 KERLDFIRKNQKKLRAEEYIHLRDAVVNDQSINASHIGQIIILPSSFTGSP
FT                 RYMNEKSQDAMTYVRKFGGPDLFITFTCNPEWAEIKNELFPDQKPQDRHDI
FT                 VSRVFHLKLKIMINLLTKKNIFGSSKAFVYSVEWQKRGLPHAHILLWLTNK
FT                 IPSDSIDDIIRAEIPDKEQDPELHNIVVKNMVHGPCGSHNPMSPCMIENIC
FT                 SKKFPRRLLIDTQTGDDGYPNYRRRAPDCGGNTCVLKVKGTEMEIDNRWVV
FT                 PYNPVLLRIFNSHINVEFCHSVKAIKYICKYIHKGCDQATFTVQSKNEVEK
FT                 YINGRYLSSSEAVWRIFQFPIHERYPAVIHLAVHLQNGQRIYFNEENFQDR
FT                 VINPPVSTLNAFFELCRNDDFAKTLLYNEVPQYYIWECNKFSRRKRGQDVD
FT                 GFPGIKKDSALGRVYNVHPAQTECFYLRMLLMNVRGPTSFRNLRTVNGITM
FT                 ATYQSACKELGLLEGDEHWENTLSDAAVSESAAKLRELFAIILIFCQPSEP
FT                 LKLWRKNCNRLCEDIINRVRNENHDHLLRCTKEIHNEGLILIENKIYEMSE
FT                 KSLKDFGLPSPIRNNSNNVEPQEEILRKSYDINDLHNFISNNISKLVPDQV
FT                 FTYNSVVKSVLAEKGKIFFLDASGGTGKTFVTNLILAKVRAQGKIAIAVAS
FT                 SGIAATLLRDGRTAHSTFKLPLNVSLDRDNVCSIRKNGPLGKVLQDASLIV
FT                 WDECAMTHRAHVEALDRTLKDLRNSNKAMGGVTMMFSGDFRQTLPVIVRGT
FT                 RADIIKSCLKSSPLWKSIDILKLSTNMRSYHGGGTSDFENKLLLIGEGKVP
FT                 ESDDKKISLDKDLGRIVTNIEDLILKVYPNVANIHQQNHQWMCERAILAAK
FT                 NSNVDAINEKIIAKLPGDSINYVSIDAVVDQEDAIHYPQEFLNSLNPCGLP
FT                 PHLLKLKIGTPIILLRNLHPPSLCNGTRLQVKFLRSNVIGAVILTGPAIGQ
FT                 TVLIPRIPMVPTDLPFSFKRIQFPVRTSFAVTINKAQGQTFKHIGIDLREC
FT                 CFAHGQLYVALSRSGCGENQYILMPEENKTKNIVYTEIL"
XX
SQ   Sequence 7486 BP; 2488 A; 1248 C; 1430 G; 2313 T; 7 other;
     tctatactaa tataataaag ckgaagagtt tgtttgtttg tttgtttgtt tgtttgtttg        60
     aacgctaaga tctctggatc tactggtccg atttacattg tttttgtttt gtatgaaagc       120
     tgcattcttc agaagtgcta taggctatat aacattacat tacacatata tactaatata       180
     ttaaaatact ttcwaatttg acatgcaatt tattctgcca tgttaataac aaccgtcgtt       240
     gctaagcaac ggtttgcaaa gtttctttgc tgttttaaga aaacgtsacc caatgaactt       300
     atattttgat attcatcctt atgaaaataa atataagagt cacttttagc attttatcta       360
     gatgattgaa attatagttt actgtattac attctattmt aatatataat tatggagatg       420
     tcactgattc gaaatgacct agccttcggg cggcatagta tgactgacgc gaatgggcag       480
     acattgacgg wtttacaaaa ttttcataca ttttcgaact attgttaatt tttatgtaat       540
     tattttgctg tttgtaatta atttaagcta cactttagtt ctcttcttct tttcttggtg       600
     tggtgtaaag tttagtcctg cgcgacattg cccactactt ttgatttaat gttatctata       660
     ctattgaaaa gacatttatg ttcaaacaca gttatattaa aaatttataa tcgaaagtta       720
     tttcatcatc aaggacgttt aatgaagata atcttcggct tttaaagcat ataatttgga       780
     cgtatacttt ttgaaaatgt aaaatcaaaa taattcaacg ctgtttacgg ccgcmactct       840
     ttcgctttat tatattagta tagattagat tttattccta ttcgctaatc cataattaat       900
     gatttgtaca ctactcttcg tcgtcgttgg tattattgtt attatgtttc gtttggtaaa       960
     aataaaacta ataattaatt tgttggtggt tgatttctga tttggtcaga ataagagaaa      1020
     cataagttat aggtgatata tagattaata taattatata cttatttttc taagttagat      1080
     ttcgatctta cagtgtcgct atttttttta tttgtgtaaa tatagtattc aatgaatgag      1140
     attgatctgt taagatttta tattattttt atttttatat taatatatta aaatagatag      1200
     taacctataa ttatatttgt tgtaactttt accatttcaa ttattaaaca agttgattag      1260
     ttgatattta aatgtataga ttataatata tcgtaaattc aatatagtaa aagtgccgtt      1320
     tcgcgcataa ttaaataata aagaatataa taatttaaaa gattttgtgc aatacgtttg      1380
     tatttttgtt tgatcaataa taatttcaca aatacttatt tgaaaataat aataataata      1440
     tcgtcttttt tatactttta acagtataat aaagtctttt ttaatgttaa gtttttttta      1500
     ataaaacctt tgtttatatt tttcatattt gacagttgtc ttcatttgtc gtatctttat      1560
     tcattcgttt aatacgtgta gattttttgg acttttgcta aaaagttata tataatcttt      1620
     cacaatatta taataaataa ataggttgtg tagttcgcga tgcctagaag gaaatctcac      1680
     ctttctcggc attctgccac agcgaaacgt ctaaagctca ttcgaagcaa tgaaagcgaa      1740
     gatgaacgtt cccaacgttt agctgatcag aatgcacgga cttctaataa ccgaactcaa      1800
     gagacgagca ttgaatatcc caacgtttgg ctgatcagaa tgcacggact tctaataacc      1860
     gaactcaaga gacgagcgtt gaatactcca acgattggct gatcagaatg cacggacttc      1920
     taataaccga actcaagaga cgagcgttga atactcccaa cgtttggctg atcagaatgc      1980
     acggacttct aataaccgaa ctcaagagac gagcgttgaa tactccaaac gtttggctga      2040
     tcagaacgca cggacttcta acaaccgagc tcaagagacg agcgtcgaat actccaaacg      2100
     tttggctgat cagaatgcac ggacttctaa taaccgatct caagaaacga gcgttgaata      2160
     ctcccaacgt ttggctgatc agaattcacg agctgttaat aaccgagctc aagagacgag      2220
     cgttgaatac tcccaacgtt tggctgatca gaatgcacgg acttctaata accgcggaca      2280
     agagactagc gttgagcgct cccgacgttt ggctgaacaa gatacgagga cgtctaataa      2340
     tcgtgcccga gagtcaagcg ttaaccgatc tgaacgtctc aatagccaaa acgcaagaac      2400
     tactgcaagg cgtgctcaag aaacatgcgc tgaacgttcg cagcgtttga taaatcaaaa      2460
     cacacgagct gcagctacga gattacatag gcaaactaat ctgttaaatg cagccttcgc      2520
     ctacgactct aatcttaatt attgtacagt agacgatgtt aaaattggta gaatgaatca      2580
     tctttgcaac aattgtcaag cacagaaatg gaaaactgaa gcgcctggtt tatgttgcag      2640
     caacggtaaa gtagatattc ctaaaattcc ggaaccgaca ccagttttga aagaattatt      2700
     attaggtagt catccacgtt caaaacattt tttaagtcat acaaggcatt acaatactct      2760
     attccaaatg acttcatttg gtgcgacaga aattcgtgag ggaaatttta tgccaacctt      2820
     taaaatacaa ggacaggttt accacttgat aggaaactta cttcctgctg aaggtgagaa      2880
     atctgagttt ttgcaaatat atttcgtttc actagctgat cagctatctt tgcgttctaa      2940
     tattaatcca aatttgcgaa ctgatctcat taatcctttg caaaaagagc tacacgatta      3000
     taatagttat attcaaagtt ttaagtataa tcttgaaaac agaccactac aggacttgaa      3060
     attaattatt catgctgatt taaaacctcc taatgaacac agaggtcgct acaacgcacc      3120
     aactgtagac gaagtcgcta ttctcttagt cgacgaggat aaaggtccac gagacatcgt      3180
     gttaagtacc agagatggtc atcttcagag agtttctgag ttacacagag catatgaccc      3240
     gctgcaatat cctctgatgt ttcctcgagg aaataacggt tactgtgtca atattcaaca      3300
     acaaaatgtt gctgcaagat ccaaaacagt atcatgtatg caattttatg cttttaggct      3360
     aatggtgaga gcaaatgata taaacagctt acattatttt agagggctgt tgaaccaata      3420
     ctgtgtagat atggcggcaa aaatgattaa agagaggctt gattttatta gaaagaatca      3480
     aaaaaaattg agagctgaag aatatataca tttacgagac gcagtagtaa atgatcaaag      3540
     tatcaatgct tcccacattg gtcagattat tatattgccg tcttcattca caggatctcc      3600
     acgatacatg aatgaaaaaa gtcaagatgc tatgacatac gtcagaaaat ttggcgggcc      3660
     agatcttttc atcactttca cttgcaatcc agagtgggca gaaataaaaa atgagttatt      3720
     tcccgatcaa aaaccgcaag atagacatga tatagtttct agggtatttc atttgaaact      3780
     caaaattatg attaaccttt taacaaaaaa aaatattttt ggatcaagta aggcatttgt      3840
     ttacagcgtt gaatggcaga aaagaggact acctcatgca catattctgt tatggctaac      3900
     aaataaaatt ccatcagatt ctatagacga cattataagg gctgaaatac ccgacaagga      3960
     gcaggaccct gaacttcaca acattgtggt aaaaaacatg gtccatggcc cttgcggctc      4020
     ccataatcca atgtcaccat gcatgataga aaatatttgt tccaaaaaat ttccgaggag      4080
     gttacttatt gatacacaaa ctggtgatga tggttatcct aattatagac gaagagctcc      4140
     agattgcgga ggaaatacat gtgtactcaa agtaaaagga actgaaatgg aaatagacaa      4200
     tagatgggtt gtgccttata atccagtttt attgcgaatt tttaattcac acattaacgt      4260
     agaattttgc cactcagtta aagccataaa atatatatgc aagtatattc ataagggttg      4320
     tgaccaagct acgttcacag tgcaaagcaa gaacgaggtc gaaaaatata ttaatggtcg      4380
     ctaccttagc tcctccgaag ctgtttggag aatctttcag tttcctatcc acgagcgcta      4440
     cccggcagta attcatttgg ctgtccattt gcagaacggc caaagaatat atttcaatga      4500
     agaaaacttt caagatcgcg tcattaaccc tcctgtatcg actcttaatg cctttttcga      4560
     actctgtaga aatgatgatt tcgctaaaac attgctatat aatgaagtac ctcaatatta      4620
     tatttgggaa tgtaataaat tttctagacg aaaacgcggg caagatgtag atgggttccc      4680
     tggaattaaa aaagattcgg ctttaggccg tgtttacaat gttcatccag cacaaacgga      4740
     atgtttttac ttaagaatgc tattgatgaa cgttcgagga ccaacttctt tccgaaatct      4800
     tagaactgta aacggtatta ctatggccac gtaccaaagc gcttgcaaag aactaggatt      4860
     attagaagga gatgaacatt gggaaaatac tctttcagat gctgctgttt ctgaatcagc      4920
     cgctaaatta agagagttat ttgctattat attaatattt tgtcagccat ctgaaccact      4980
     gaaattatgg agaaaaaatt gtaatcgttt atgtgaggat ataataaata gagttcgtaa      5040
     tgaaaatcac gaccaccttt tgcgttgcac taaagaaata cacaatgaag gcctgatatt      5100
     gattgaaaat aaaatttatg aaatgtccga aaaatctctt aaagactttg gtcttccttc      5160
     cccgattcgt aataattcaa ataatgtaga acctcaggaa gaaattttac ggaaatcata      5220
     tgacatcaat gatttacata attttatttc taataatatt tccaagttag tacctgatca      5280
     ggtatttact tataattcag ttgtaaagag tgttttggct gagaaaggca aaatattttt      5340
     tttagatgct tcaggtggca cgggaaaaac ctttgtgacc aatttaatat tagccaaagt      5400
     tagggcacag ggtaaaatcg ccatagccgt tgcgtcatca ggtattgcag caacattatt      5460
     gagagatgga agaactgctc actctacgtt taagttgccc cttaatgttt cacttgatag      5520
     agataatgtg tgctccattc gaaaaaatgg tcctttgggc aaagtgctgc aagatgcgag      5580
     cctcatagta tgggatgagt gcgctatgac tcatagagct cacgttgagg ctttagatag      5640
     gacgcttaag gatctacgaa attcaaataa agctatgggt ggagtcacta tgatgttttc      5700
     cggtgacttt agacaaacat tgcctgtaat agttagggga actagagcag atattatcaa      5760
     gtcatgtttg aagtcatccc cgttatggaa atctatagat attctaaagc tttcaactaa      5820
     catgaggagt tatcacggtg gaggcacctc agattttgaa aacaaactct tattaatcgg      5880
     ggaagggaaa gtacctgaat cagacgacaa aaaaatttcc ttagataaag accttggtag      5940
     aattgtaaca aatattgaag acctgatatt aaaagtgtac ccaaatgtag ccaatataca      6000
     ccaacaaaat catcaatgga tgtgtgagag ggcaatttta gctgcgaaaa attcaaacgt      6060
     tgatgctatc aatgaaaaaa ttatagctaa attaccaggt gacagcatca attatgtttc      6120
     cattgatgct gttgtggatc aagaagatgc gattcattac ccccaagaat ttttaaattc      6180
     tttgaatccg tgcgggctac ctccccattt actaaaattg aaaatcggca cgcccataat      6240
     tttgttacgg aatctacacc cgccaagttt atgcaacggc actagattac aagtgaaatt      6300
     tctgcgaagt aatgtcatag gggccgtaat tttgactgga ccagccattg gtcaaacagt      6360
     gctgattcca cgaattccca tggttccaac agatttgcct tttagtttta aaaggataca      6420
     atttccagtt agaacatcat ttgccgtcac aatcaataaa gcgcagggac aaactttcaa      6480
     gcatattggg attgatttaa gggaatgctg ttttgctcac gggcaattat atgttgcttt      6540
     atctagatcc gggtgcggtg aaaaccaata tattttgatg cctgaagaaa ataaaacaaa      6600
     aaatattgta tatacagaaa tattgtaata taatactgta aataataaaa aaatattgta      6660
     tatacagaaa tattgtaata taatagcttt aagtcatttt aaattttttt cttttatttt      6720
     gacccgagat ctcattttat ttttttcttt tattaaaaca acaaaggttc tggtatttga      6780
     aagaaacgaa gagaggacgg aacgcaatgt ccgtgtgatt ggtaagatat tagaacgagt      6840
     gaatgaggtg gtatacttga ggagtatgtt cagtagagat ggaagataca gggttaacgg      6900
     agccttagct gcattgatga gacggcgaaa cgtcagcaca gctgcgcgtt tggccgtaca      6960
     caatgcagts ttggtaccga tgttgttata cggcagcgaa acgtgggtat tacagaagaa      7020
     gaatgagaga aagatgaatc ccgtggagat gcgatctctt tataggatat gcggagtcag      7080
     tttagctgat cgaatccgca atgaagagat acacagaatg gcagatacta acgaggaagc      7140
     gacggtgaaa atgaagaaga acatgttcag ctggtttggg cacgttgaac gaatgagtga      7200
     agaaagaata gcaaaaaaac ttatgatgga aaagtgagtg gtaagaaagg taagggaaga      7260
     cctcggttta ccttaaaaaa cacagtatca aatatactgg aggaaggtca cgtaaaaagc      7320
     atggggaccc cctgaagggc atgtatgaag aggttgatga cagtggacga ggcgaaagag      7380
     gtatgtagag atcgtagcat ttggcgctcc gttctctctg accaccccgc tacggataaa      7440
     gcgtgaagtt aagttatttt ggcccgaacg aagtcgggat gggccg                     7486
//
ID   Helitron-2_NVi repbase;    DNA;    INV; 6512 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6512
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 763-763 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1373..1708,1712..2152,2140..2721,2721..3248,
FT                 3209..3589,3593..4069,4143..4637,4628..5485)
FT                 /product="Helitron-2_NVi_1p"
FT                 /translation="LNNDKIGFIANSEYDDKTYTLNYLGKMDQECEFCSAK
FT                 HFLLELPVDKKYSNCCHKGKVIIKDKFQYPICLLQLTNRKSQESKQFMRLI
FT                 RNYNNALAFASFGAKLDIVPGHGPVFRICGQTYHNAYSLNPVTNENRKFGQ
FT                 LYIIDNEIANEIRFSTDIKCNIKLLNENDNILRKINPYAEAYKMMHEVEEE
FT                 ELKRARNANELPREVKMFITRQNYSNNKTFELPSCNEVAVVFVGEEGEPPF
FT                 NRDFCIDSKNSKPEIFQLNIPIISKHVDPMTYPLIFPFGQGGWQPNYESEI
FT                 KNKTQVTALLYYSFXLSVRNEFNPCLNLGKLTQQFIVDSWCKVEGTRLFYI
FT                 RNQQAKLRTETYRGLMDYVTNKAQSINVNIGKMVILPSTFIGSPRSLQQNY
FT                 IDAMTVVQTFGKPDLFVTMTCNPKWIEIVENLNENENTLDRPDLVARVFHL
FT                 KVAAFWNEIXKKIFGKIIGYIYVIEFQKRGLPHMHALLYLDFKDKFHSSDQ
FT                 IDNIISAEIPDESNYPILYGLFKQHMIHGPCEIQNKNSPCMDKSKFICTKK
FT                 FPKPFASSTNYNVENGYPIYRRRNDGRIIKYGSNRTANNQFVVPYNPYLLL
FT                 TFNCHINVEICSTVKSINICLNIYIKVPIPLYLFKYLYKGPDSALVGFRKE
FT                 NDLNNESDITSNNSNEITNVLNYDEIEQYLAMRYVCPPEAMYRLLEFKLYD
FT                 QSHVIYRLAVHLENEQFVYFKQGSETELIDRNVNTTLTAWFELNKINSLAR
FT                 DLLYIIPNHYVFDKKLKIWTPRKRIYKPILSRMYFVDPKKRELFYLRMLLL
FT                 HVKGATSFENIRTVEGIVYSSFYEAALALHLISADNEWDKCLQEAINYQFP
FT                 NALIQLYSFILIFHHPCNAKELYNKYKTYFYDPKLNDEIAEQTCLTKINNI
FT                 LISHGITLRDSHLHMIRTLFTHLIRDNVIFLTRFNHQISVISVAWTGIAAN
FT                 LLHGGKTVHTTFKLPLNLSELSTSNVSPNSNYGKFLKTIKVLKYAFDAIDK
FT                 LFKDLHNSVEPFGGIVVVLSGDFRQILPVVRRGSRAQILESCVKKSSIWNK
FT                 FKIMKLIDNIRVTNNDQLFNLGYSWLLNVGEQNCTLKFEKQNHVTLISNDM
FT                 LSRGNLIYEIFGSKIDPNDKTLYQKVILAPTNIDVLKINDEILDQLEGESH
FT                 TYLSIDLVNTETNEDMFNSISIEFVHXLTPNGLPPHKLTLKVDAIVILLRN
FT                 LNLDGGLCNGTRLMIQELRSYVVKAEIITGTSKGKIILIPRIDLSPSIEEV
FT                 PFTMVRRKFPFRLGFAMTINKSQSQSFDNVGLYLPSSVFSHGQLYVALSRV
FT                 RQKNNLKILLAXDSVITENQDDKINYLNKRFNDNLKIYIKNVVYREIFELD
FT                 NF*"
XX
SQ   Sequence 6512 BP; 2508 A; 789 C; 831 G; 2376 T; 8 other;
     ttgcgaggtt atgatcactt gttttggtat aactttcaaa gcttccgaat atatccacca        60
     ggtgtgccac ttttgcctta acttgcgaat acttaaaacg ggatcaatta ccatattatg       120
     gcgcgttttt caaagttaca actatgtcag atttatctat ttattagttt atactacaaa       180
     atttaattgt aaactcatat aaaaatttga gttaataaca ttgaaatttt taatttcaat       240
     tgaatgtaat tataagatca ttttaaattt ataagttaaa aaatgttaaa tgaaaattat       300
     attaatgtat tattataagt catgcttcgt ggggtgcgtg gtagcatatg gccgggtaaa       360
     ttgagtacgt tattataata ataataataa tatttatcat tttattataa tggtttaatg       420
     ttgtaactgt tgaataaata taagtgtatt tatattttat tttaaatata tcgtgtttta       480
     aaatattatt tattgtttta cattattaaa tataattatt tttaattaaa atgatatatt       540
     ttatacttga gactaaaaaa attaatagaa ttttcacttg ttctgttttt ttagattgtt       600
     aaacgaaata aatataatta cttaatattg attgaatgta tgttttaaga tataagttcc       660
     aatgaattat tattaacttt atatattgat aaaattttat ttttaatact aactaattct       720
     aatctcttat ttattatact aggattagat cagcgtgctt tgcgcttgat aacttagatt       780
     ttatctggta ataatttaat cattttttaa tcattttttt taatacttag aaaaaaattt       840
     aattcattat tctttagaat catatttata aaaaaaatgt atatcttcca ctctttgaaa       900
     atttacaaca ttataaaata tattccaaag agtttaagta taaagtttaa aatatacata       960
     atcaatcaaa ctaagtgata acgctaaatg taaaatttct ttctaaaaat atcattaatt      1020
     ccatattart actacattca aatttatata ttttatataa ctccttagta catattttat      1080
     aataattgca tgaagagttt cataagtttg tggagttttg ttatcattga atttaaaatg      1140
     tttttttaaa tgtcattatt tttatactga cgctagatct agattttata ctttattctt      1200
     gactccttgg tatatgtttt acaatattta agagatttgt caagttttta gaaagtagaa      1260
     aatttacttt gttctaaagc atagacgttg attccttatt tactcatcaa aataaatctt      1320
     cctcattatg aatcatgatt aatcttaacg aatataataa aacacacatt aattaaataa      1380
     tgataaaata ggatttattg ctaattctga atatgatgac aaaacatata ctttaaatta      1440
     cttaggcaaa atggatcaag aatgtgaatt ttgtagtgct aaacactttt tattagaatt      1500
     accagttgat aaaaaatata gcaattgttg tcataaagga aaagttataa taaaagataa      1560
     atttcaatat ccgatttgtt tgttgcagtt gactaatcgc aaatcacaag aaagtaaaca      1620
     atttatgcga ttaatacgaa attataataa tgctttagct tttgccagtt ttggggctaa      1680
     actagatatt gttcctggcc atggccctta agtttttcgc atttgtggtc aaacttatca      1740
     taatgcttat tcattaaacc cagtaacaaa tgaaaataga aaatttggac aattatatat      1800
     aatagacaat gaaatagcta atgaaattcg gttttcaact gatataaaat gcaacataaa      1860
     attactaaat gaaaatgaca atatcttacg taaaataaat ccttatgctg aagcatacaa      1920
     aatgatgcat gaagttgagg aagaagaatt aaaacgtgct cgaaatgcca atgaattacc      1980
     tagagaagtt aaaatgttta ttacacggca aaattattct aataataaaa cctttgaact      2040
     tccatcatgt aatgaagttg cagtagtttt tgtaggtgag gaaggagaac ctccatttaa      2100
     tcgtgatttt tgtattgatt ctaaaaattc aaaacctgaa atattccaat tataagtaaa      2160
     catgttgatc ctatgacata tcctttaatt tttcctttcg gacaaggagg atggcaacct      2220
     aattatgaaa gtgaaattaa aaataaaacc caagttacag cgttgctata ttattccttt      2280
     cytttaagtg tacgaaatga atttaatcct tgtttaaatt taggtaaatt aactcaacaa      2340
     tttatagtcg attcatggtg taaagttgaa ggaacgagat tattttatat tagaaatcag      2400
     caagcaaaat taagaactga aacgtatcgt ggattaatgg attatgtaac aaataaagct      2460
     caatcaatta atgtcaacat tggcaaaatg gttattttac catcaacatt tattggaagt      2520
     ccgcgttctt tgcaacaaaa ttatatagac gcaatgacag tcgtccaaac atttggaaaa      2580
     cctgatttat ttgttactat gacttgtaat cctaaatgga ttgaaattgt agaaaattta      2640
     aatgagaatg aaaatacatt agatagacct gatttagtag ctcgagtttt tcatcttaaa      2700
     gtagctgcat tctggaatga ataamaaaaa aaatttttgg taaaattatt ggttacatct      2760
     atgtaattga atttcaaaag cgaggattac ctcatatgca tgcactacta tatttagatt      2820
     ttaaagataa atttcatagt tctgatcaaa ttgacaatat tattagcgct gaaataccag      2880
     atgaaagtaa ttatcctatt ctgtatggtc tttttaaaca acatatgata catggaccat      2940
     gtgaaattca gaataaaaat tcaccatgta tggataaatc aaaatttata tgtactaaaa      3000
     agtttcctaa accgtttgct tcatctacta attacaatgt agaaaatgga tacccaatat      3060
     atcgtcgacg taatgatgga cgaataataa agtacggatc gaatcgtact gctaataatc      3120
     aatttgtagt cccatataat ccttatttat tgctaacatt taattgtcat attaatgtcg      3180
     agatatgcag cactgtaaaa tcaattaata tttgtttaaa tatttatata aaggtcccga      3240
     ttccgcttta gtaggtttta gaaaagagaa tgatttaaat aatgagtctg atattacatc      3300
     taataattca aatgagatca ctaatgtttt aaattacgat gaaatagaac aatatttagc      3360
     tatgcggtac gtatgtccgc ccgaagcaat gtatagatta ttagaattta aattatacga      3420
     tcaatcccac gtaatttatc gattagcggt ccatttagaa aatgaacaat ttgtatattt      3480
     taaacaagga tctgaaacag aattaataga tcgtaatgtg aatactacat taacagcttg      3540
     gtttgaatta aacaaaatta attctttagc acgagattta ttatatattt aaattcccaa      3600
     tcattacgtg tttgataaaa aattaaaaat ttggactcca cgaaaacgaa tatataaacc      3660
     catattgagt cgtatgtatt ttgttgatcc taaaaaacgt gaattatttt acttacgtat      3720
     gttgttatta catgtaaaag gtgccacatc atttgagaat atacgaactg tagaaggtat      3780
     cgtatattct tcattttatg aagcagcatt agctttacat ttaatatcag cggataatga      3840
     atgggataaa tgtttacagg aagctataaa ttatcaattc cccaatgcat taattcagtt      3900
     atattctttt attttaatat ttcatcatcc ttgcaatgct aaagaactat acaataaata      3960
     taaaacttat ttttatgatc ctaaattaaa tgatgaaatt gcagaacaaa cttgtttaac      4020
     gaaaattaat aatattttaa tttcacatgg aataacgtta cgtgattcat gattatacct      4080
     ttaattgacg aaactattca aattttcaat tactctaatg atttgcgaaa ctactccatt      4140
     agcaccttca tatgattcga acattattca ctcacttaat aagagacaac gtgatatttt      4200
     taacgaggtt caatcatcaa atttcagtta tatctgtagc ttggactggt atagccgcaa      4260
     atttgttaca tggaggtaaa acagttcata caacatttaa attaccatta aatttatcag      4320
     aattatcaac aagtaatgta agtcctaatt caaattatgg aaaatttcta aaaacaataa      4380
     aagtattaaa atatgcgttt gatgctattg ataaattatt taaagatttg cataattcag      4440
     tagaaccatt tggaggaata gtagtcgtat tatcaggaga ttttcgtcaa atattacctg      4500
     ttgtacgacg tggaagtcga gctcaaattc tagaatcatg tgtcaaaaaa agttcaatat      4560
     ggaataaatt taaaattatg aaattaattg ataatattag agtcacaaat aatgatcaat      4620
     tgtttaatct tggttattaa acgtaggcga acaaaattgc acacttaaat ttgaaaaaca      4680
     aaaccacgta actttaatat ccaatgatat gttatctaga ggaaatttaa tatatgaaat      4740
     tttcggaagt aagattgatc ccaatgataa aacattatat caaaaagtaa tattagcacc      4800
     gactaatatt gatgttttaa aaattaacga cgaaatatta gatcaattgg aaggagaaag      4860
     tcatacatat ttaagtattg atttggtaaa cacagaaaca aatgaagata tgtttaattc      4920
     aatatcaata gaatttgtcc attyattaac acccaatgga cttcctcctc ataaattaac      4980
     attaaaagtt gatgcgattg taattttatt gagaaattta aatttagatg gtggtttatg      5040
     caatggaact agattaatga tacaagaatt acgatcttat gttgttaaag ctgaaattat      5100
     tactggtacc tctaaaggta aaattatttt aataccccga attgatttaa gtccttcaat      5160
     tgaagaagtt ccatttacca tggtacgaag aaaatttcca tttagattag gatttgcaat      5220
     gactataaat aaatctcaaa gtcaatcgtt tgacaatgta ggattatatt taccgtcttc      5280
     agtttttagt catggtcaat tatatgttgc tttatctaga gtacgtcaaa aaaataattt      5340
     aaaaatatta ttagcaraag attcagtaat aacagaaaac caagatgata aaattaatta      5400
     tttaaataaa cgtttcaatg ataatctaaa aatttatatt aaaaatgttg tttatcgtga      5460
     aatttttgaa ttagacaatt tttaactaat tttatattac gtatcttcta atattctcga      5520
     taattaatat ttcatttatt tatatatgtt aatactgaac attaatttaa tttttctata      5580
     cattacaatt tttaatatgg ttatgtataa gtatgttctg cctaacaatt aaayaataag      5640
     catcaaagaa ataaaaatag cagcaaccaa tttcattgcc attggtagcg cttgtatatt      5700
     atcattttta tataataaat taattaaata gcaaaatata attatttaat tataaaagtt      5760
     ttatattgta agcatcaaac aaataaaata gagcaaccaa tttcattgcc gttggtagcg      5820
     cttgtacatt atatttatgt atttaacaaa ttatttaaat aataaaatat cartatttga      5880
     ttataaaaac tttacataat aagcatcaaa caaattaaat agcagcttcc aattccatca      5940
     cagttgatag cgctcgtaca ttttcattta yatatttaac gaattattta aataacaaat      6000
     atgagtattt gattgtaaaa atttacgtaa taagcatcaa aaataaatag caaccaattt      6060
     attgcattgt agcgcttgta tttatcattt tctaaaatta tttaaatagc aaaatataat      6120
     tatttaatta taaaagtttc atattgtaag catcaaataa ataaaaagca gcaaccaatt      6180
     ttattgacgt tggtagcgtt gtacattatt atttattatt taacaaatta tttaaataac      6240
     aaaatataat tatttaatta taaaaattta tatagtaaac atctaagaaa aaaaaataga      6300
     atcatccaat ttcattgcca ttggtagcgc ttgtgcatta taatttataa attcaataaa      6360
     ttaaaataag ttattaaatt tattaaattt acagtacaaa actacatttt aatttaatat      6420
     aaagctactt ctacatctca aatttgtagc gctcccttat tatattacaa attatggtat      6480
     aaatatgtat ataaaaactt caaaataaac ca                                    6512
//
ID   Helitron-2_RPr repbase;    DNA;    INV; 12929 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-12929
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3239-3239 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined. The Tpase coding direction is
CC   inverse with the terminal structure: the hairpin structure is on
CC   the 5'-end.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3135..3578,3577..10110)
FT                 /product="Helitron-2_RPr_1p"
FT                 /translation="ILKILNYITEMPSKYRKRKQIIKNLVTGIRQTIDSTA
FT                 ELENYTIVTPAATKQQRYYVKNREGIVRKQRQYNLRQKVEIKEKQKVYNLE
FT                 HKEKIQEKQREYDLAHKEEIXKKQREYNLAHKEEIQKKQREYDLAHKEEIK
FT                 KKQREYNLAHKEEIQKKQREYDLAHKEEIKKKQREYNLAHKEEIXKKQREY
FT                 DTAHXEQKRKKQRVYNVVHKVGIARKQKQKDRINSEKKTETQRKYNEKKRN
FT                 KVSSRQKRYDGRNRAVINLKRNIRYFLTRQNVNKPSASFATLLKKRIQTRK
FT                 KINTFQGECALINRLCATLKRNRKFNKHRSVRNKTKRTVFYYLIKHSNHLV
FT                 GIARSYFRYLNNKLKAVVDEAVNKFEINKIKTLTPKNIVKVFGGKQKHTAH
FT                 SEPYFYESSYSAIPPGHILLADSQXVFVNGHNFKKYITKDNNIVEWPCGIT
FT                 CKFSKQSMSTILNKLVEFVXGDINAVSIKKLANKCRYRHHDKKGHTIHCAS
FT                 HNSIFKCSTLLQLLSELSVHYTAFRNIKRQIYTMRNLFFKINRVTSCINKA
FT                 NNVESILRSVNDLKKFLGTLKIDTNKFKKYVPSTSCDTNEINILNKYKKNL
FT                 SSLKSKVTSFPENFCACCNMLIYDEDLKDFINFQKNNNKSWRAIIIYINKN
FT                 YDNIHRDGLKICTYCARKLNQNCIPGRAAYNCLEVDPVPEEVGKLNIFETM
FT                 LTQLVKSFQCVIRLQPKKGKIAVSEKLKGLKGRVTYLPLPLQKNVDLLPNE
FT                 LPQNHEVVVLVNGVPTQNRVIWRDLVSANKIYKAIAALKEINPLYANVNLN
FT                 VKLLPNINENIGNKYTFKDVSGASIKKVDSTTFYKTGFYTFHSLHPINMSA
FT                 VESSEIESYQMQQMKGDYVSVFDKNLDYLTFPHLFPKGRFGKFDVNRNIPL
FT                 SDAEYRKTRILNKDGRFRRDPCYLFHLLNDSEFKYLGGAIAHLLNVRAYKP
FT                 YTVNDILTKVTVNDEQLEQHLINLFSSLRGTKEYWQRRRQELNAMTRDFGA
FT                 PTFFVTLSCAEYDHSELLQYIVKINKDVPNVEKMSAGELCALDPTSVCRYY
FT                 HRLIRNMFKFLINDKINPVLGFVEHYFWRVEYQERGAPHYHMLLWIRDSPE
FT                 INNDXFKKVADFINTYICARLPDPLESPVLHSFVRKYQXHKCNSYCQRKYR
FT                 VKQKMYTKCRFGFPRKVTDELIINDIISTIASRVKGFGPKRVYDLPRQRSE
FT                 VRINDYNPVLLLASGGFNVDVQFVKDGDLRLVIYVTSYISKNEKTELEDLW
FT                 ADICKESNKKALWSLGLKKLTHRQIGLYETVDRLLGHHLYGKSEDMRYIST
FT                 TFRENRKLCLKPYNQLQNMPANSTDIYLKSWLNDYYPNRPDDLENLNLYDF
FT                 CRYYDLSRDQLEAENRIKLKNNVILRKRGKPYVIQHPIYKTLNTEQDRNKY
FT                 YHSLLLLFKPWRNESDILKGFRTYQEAFXHYSAELKEAMTYHDKLIMIEEG
FT                 IKELQSKIAEFKEENFINLEEDNIIREVQDADVAMLEVCAAMYTSIDDRDN
FT                 KFNLNEDQSRIFNKITKTLIDQSXNKCNSQIKLFVSGVGGTGKSYLLKALK
FT                 VWINNTFPPKKDTISVAITAPTGLAAYNVNGVTIYRLLSLPVEHQQTAEYN
FT                 KLNVESCRAIRHVLKDMKLLIIDEISLVSSLVFAYIHLRLTEIAKNNEPFG
FT                 NFNILLFGDLLQLQPVKGNQVFKKLTRIECKSKLGSIGSVDLWSMFEYDEL
FT                 KINVRQKNDKSGFINTLLNIRSGKICEEDIALLNSRVLPNNDLNNVIQNYK
FT                 ELLDSGRNPLCLFATKAQCTTFNKLYSDKFAKEIVTIDSIDEIDYNSKLSN
FT                 KKTKDLNLIINKISEDVSRTANLSKTINLFVGAKIMIKRNIDIANGIVNGT
FT                 IGAVERFVYKGNVVDSLIIIVNNKPFSLERVKARFLLLKNIYVHRKQFPVT
FT                 LSYAVTIHKSQGLTLDCLFTSLGKEVFAPGMHYVALSRVTNLNGLYLIDFD
FT                 SSKIKVDTDAISEYRRLNKMIQSPCLQTANNNICVSPTINLTKKESLLQSN
FT                 VNRELFSKTEIFGLPNSDGVSCYANVVAQCLINIDSVKFNLTNNLVNNINI
FT                 TFPDPKTRDNYQKVSVTCELFNILTSGITRGAKKPNTKRLRELIAHGSDVN
FT                 FNANIQQDAQEFLSFVINALKTENNIPSRLFDCTVKFVRKCFNCNSYWDDV
FT                 PINPEVMYFLEFGVLQNNEPVSFQTLFDYKLSDITCSECGENKIYIRSKLN
FT                 SVSDYLIVILKRYQGNRVLNEIHSFDENNVXIDGFNFTLASVIYHYGSDLN
FT                 SGHYVCAVKSPNNSWTLLNDDFINYNFKFDPGLKDAYILFLKSIT"
XX
SQ   Sequence 12929 BP; 4515 A; 2029 C; 2154 G; 4214 T; 17 other;
     ttaaaactgt ccggtaggac agttgtataa gggttgatgg tcaaaaactg cacgaaaaag        60
     cgtaacgttg aaaaacaccc aactttgaca atttttttct ctttttctat aaaagataaa       120
     attcccaaat tttctttaaa ataaagggca aatcctcctt tatgactgta attttttgca       180
     acaacccaga tctaataggt tttgagaaaa aagttgctga aaatgagcaa aaacggcttt       240
     ttcaaaaatt gttgttgttc ttgttcttgt tgttcttctt cttcttcttg ttgttgttac       300
     cttttttgta aacaacgtag cgcctaaacg cgcaaaccga ttttcatgaa tgaggtgtca       360
     ttcgattcgg aattttatgt agatgtgcct tttgggggtc tcgatgctgt acctcaaatg       420
     ggagaggagt tagccccatg tatgtaaggc cccctctata actagtttta ctaataactc       480
     tgtaaatttg gcacgttttt gataaaattt ggtagggtga aagggatagg gctcctctat       540
     ctaaaattaa agcgacgttc tgttcttaca cctaataagg ggaagttttg caatcttttc       600
     aaatcatctt cgcaataacc gattttcgtg aatgaagtgt catattattc aaaattttat       660
     gtagatttgc attttagagg ccttgacgct gcgcatattt gggacgggag ttcgtccaat       720
     gtatgtaagg ccccttccaa tattattgtt actgataact ctgtaaatca gcccgatatt       780
     gataaaattt gggaggatga aggggttagg gctcccctgc ttaacagtaa agcgaaggtg       840
     tgctcttaca cctattaagg ggaagtattg caatcgtttc aaattatcaa atggtctggc       900
     tgtgggtgta tgaagggagc acattttctc agaaaagact tccgcgtgtt actttcttca       960
     aacatggaca ttttattgca cggtagatta agcctcgctt agataatgaa agtgtaacga      1020
     gcggcctgaa aaaattctcc ctctatctct ctctgtttca gtgtgtgtga ttatcaaata      1080
     ccagaaatcg cagaacgtta aatgtcttag cttagatgag ataaagtttt agtcaaaatc      1140
     ggtataccgg aagtatcact ttaatgacga gatttttcag tttgtcagga atttttggga      1200
     aacttataca ggaaatccga ttaatcctaa atttctaaac ttattagaat taaatataac      1260
     aaacgtccca agtttgtaga atatttgtaa gtataattta aagaataata ttaagaggaa      1320
     gtcgtgagag tgttgttacc agattttgtt catagaaatt ataatttctg agaaaatctt      1380
     gttccaaaag ttgcgataag agaacttcat cagttaaaac tgtttgtaat attaatttgt      1440
     atttgttgcg atgagaaaga gtcaataata ataatgtttt ctataattta ataaaccatg      1500
     aagwaatgtc tacatagaaa cattcagaaa taatatctat gactaatccc caacttgata      1560
     atataaatgc cattagactt tactctttcc mcctgaatag taaacaatga acatggtatg      1620
     gttttaattt aataaacttt aaacttattt aaacttaact tagtggcgtg atttccccct      1680
     cctttatctt ttgaatgcac tataaagtgg aaataattat ttaatctaat tcaaacgtct      1740
     tttgacatcc gtagaagaag tgcttgttat tttttctatt ttattagcta ttaaactatt      1800
     tattgaagac ttcatacatc cttctcaatt tggtaagtag attttttgta attatttagt      1860
     taaatacatt ttaattcaga aattactctt atttggcggt tgattttagt ccgattaatt      1920
     gtgcttaact gctgatgtct gtctagatga aaagtgatcc tagttctgac tgattgttaa      1980
     aattcacttc ctttatcaaa aagttaatga atattgctta gagtactttc gttgctcgat      2040
     cggaaaaata aagtttaaaa atttaaaagt ttaaaccttc ttgttgtgat gtggatactc      2100
     taatttattt ttatttttta tccatttttt ggacgtatct ccccgctttt atgaccaact      2160
     tgcttcatta cttttgtctg ataataaact tgtaacccaa attatcatgt taatgaacag      2220
     ttttcacttc ttcaagattt tctctaaaca attttctact gtaattttct cggcacatag      2280
     tttgcatata tttacgtcta ttacttttat ttgaaacatt tttccgataa aattcaattt      2340
     caaacgattc tggtggagga aggaaggtag gcaggctaaa gtacaatcat ttcattctag      2400
     tgatcggagg taccacttaa gtcctaacaa atgaattcaa tattccgctt aaattcttag      2460
     tttgaagaga attgtttaac cggaagtgcc tgtttaaaaa ataaataaaa cattttttta      2520
     ctttttcact tcctcttaga caagtattgc gcccttgtaa aaattttccg tttcatcttt      2580
     ccaccggaaa tgtatatatg cgcacatact gtatatgtag cgttgtgtgt gttgtcaaaa      2640
     tatctcaaaa cgaaaatcgt atkaagctga tactcgtatc agtgattaaa ctgatactaa      2700
     tttcaatcag gttcgacaaa gcccacagac aatacaatcc ctaaaccgga agtctctact      2760
     mtgctgcatt agtgaagaat ttcttcgttt ttcattgatt ttattttaat tttcctctag      2820
     gtttkttttt atttattttt gtaagttgca aatctatctt atacccataa ctcattattc      2880
     agtttggata actaaaaatt aactttcccc cattgctgtt atagtcaatt attgttctaa      2940
     aagttctttt ttgttcatac atcaaattaa aatattccca atttaaaaaa attactcttt      3000
     aaagttttat gtttcattgc aacaaacaaa atttacttct ttttgcgaac ctaaaaataa      3060
     tttttttttg ttttcagagt ctaagaaaaa aatacgttaa gtatttatat tctgtattaa      3120
     ttatttattt ctaaatacta aagattttaa attatattac agaaatgcct tctaaatacc      3180
     gaaaaagaaa gcaaataatt aaaaatttag taacgggtat tagacagaca attgacagca      3240
     ctgctgagct cgaaaactac actattgtga ctcccgccgc aactaagcaa caacggtact      3300
     acgttaaaaa tcgcgaggga atagtaagaa aacagcgaca atataattta agacaaaaag      3360
     tagaaataaa agaaaaacag aaagtgtaca atttagaaca taaagaaaaa atacaagaga      3420
     aacagagaga gtatgattta gctcataaag aggaaatama gaagaaacag agagagtaca      3480
     atttagctca taaagaggaa atacagaaga aacagagaga gtatgattta gctcataaag      3540
     aggaaataaa gaagaaacag agagagtata atttagcata aagaggaaat acagaagaaa      3600
     cagagagagt atgatttagc tcataaagag gaaataaaga aaaaacagag agagtataat      3660
     ttagctcata aagaggaaat amagaagaaa cagagagaat atgatacagc tcatwcagaa      3720
     caaaaaagaa agaagcaaag agtatataat gttgtccata aagttggcat agcaaggaag      3780
     cagaaacaaa aagacagaat aaacagtgaa aagaagactg aaacacaaag aaagtacaat      3840
     gaaaagaaaa gaaacaaagt cagcagtaga caaaaacgtt atgatggaag gaatcgagct      3900
     gttatcaact taaaaagaaa tattcggtac tttttgactc gccaaaacgt aaataagccc      3960
     tcggcgtcat tcgcaacttt attgaaaaaa cggatacaga ctcgaaaaaa gataaatacg      4020
     tttcaaggtg aatgcgcgct aataaacaga ttgtgtgcaa ctttaaaacg gaatcgtaag      4080
     tttaataaac accgcagtgt aagaaataaa actaaacgca cagtgtttta ttacctgata      4140
     aaacattcta atcatttagt cggaatcgct cgatcctact ttagatatct aaacaataaa      4200
     ttaaaagccg ttgttgatga ggccgttaat aagttcgaaa taaataaaat taaaacccta      4260
     actcctaaaa atatcgtgaa agtwttcgga ggtaaacaga aacacactgc acattctgaa      4320
     ccttatttct acgaaagctc ttacagcgcg attcctcccg gacatatatt actcgctgat      4380
     agccagmacg ttttcgtgaa cggacacaat tttaaaaagt acattactaa agataataat      4440
     attgtagaat ggccttgcgg tatcacgtgt aaattttcaa aacaaagtat gagcactatt      4500
     ttaaataaat tagttgaatt tgttmacggc gatataaatg ctgtgtcaat caaaaagctt      4560
     gcgaacaaat gtcggtacag acatcacgat aaaaaaggac acaccataca ctgcgcttca      4620
     cacaacagca tattcaaatg cagtacactt ctgcaacttc tttcggaatt atcggtacat      4680
     tacaccgcgt ttaggaacat aaaaagacag atttacacca tgcgtaatct atttttcaaa      4740
     attaatcgtg taacttcgtg tataaataaa gcaaataatg tcgaatctat tttacggtcc      4800
     gttaatgatt taaaaaagtt tctcggaaca cttaaaatcg acaccaacaa atttaagaaa      4860
     tatgtacctt ctactagttg cgacaccaac gaaataaata ttctgaataa atataagaaa      4920
     aacttgtctt ccttaaaaag taaagtaact tcttttccgg agaatttttg cgcgtgttgc      4980
     aatatgttaa tttatgacga ggatttaaaa gatttcatta attttcagaa aaacaataac      5040
     aaatcgtggc gagctataat tatttatatt aataaaaact atgataatat tcaccgggac      5100
     ggtcttaaaa tttgtacata ctgtgcacga aaattgaatc aaaattgtat tcccggacgc      5160
     gccgcgtata actgtttaga agtagatccc gtgcctgaag aagttggtaa gctgaatatt      5220
     ttcgaaacaa tgctgaccca attagttaaa tcgtttcaat gtgttattcg tctccagccg      5280
     aaaaaaggga aaattgcggt cagcgaaaaa cttaaagggt taaagggtcg cgtcacttat      5340
     ttacccctcc ctttgcagaa aaacgtggac ctacttccga acgaactgcc ccaaaatcat      5400
     gaagtggttg tactggttaa tggcgtacct acacaaaacc gagtcatatg gcgagattta      5460
     gtgagcgcga ataaaattta caaagcgatt gccgctttaa aagaaattaa cccgttatac      5520
     gcgaacgtaa atctaaatgt aaaattgtta ccgaatatta acgaaaatat aggtaataaa      5580
     tatactttta aggatgtatc cggggcttcc ataaaaaaag tagatagtac aactttttac      5640
     aaaaccggat tttatacttt tcactccctt catccgataa atatgagcgc agttgaatcg      5700
     agcgaaatcg aatcgtatca aatgcagcaa atgaagggag attacgtgtc ggtttttgat      5760
     aaaaatttag attatttaac atttccgcat ttatttccta aaggcaggtt cggaaaattt      5820
     gacgtaaata gaaatattcc tctgtcggac gctgagtatc gtaaaacgcg aatattgaat      5880
     aaagacgggc gatttcggcg ggatccttgt tatttatttc acttgttaaa cgacagtgaa      5940
     tttaaatacc taggcggggc cattgcccac ttgttaaacg ttcgcgcgta caaaccgtac      6000
     acggtcaatg atattttaac taaagttacc gtaaacgatg aacagttgga acagcattta      6060
     atcaatctat ttagttcgtt acggggtact aaagagtatt ggcaacgtcg acgccaagaa      6120
     ctcaatgcca tgacacgcga ttttggggcg ccgacttttt ttgtaacttt gtcatgtgca      6180
     gaatatgatc attccgaatt attgcaatac attgtcaaaa ttaataaaga tgttcctaac      6240
     gtggagaaaa tgtccgccgg ggagttatgt gcgttagatc cgactagcgt gtgtagatat      6300
     tatcaccgtc tcatccgaaa tatgttcaag ttcctaataa acgataaaat aaacccggta      6360
     ttaggtttcg tggaacacta tttttggcgc gtagaatatc aagaaagggg ggcgccgcat      6420
     taccacatgt tattgtggat tcgggatagt ccggaaatta ataacgatts ctttaaaaag      6480
     gttgccgatt ttattaacac atatatttgt gctcggttac cggatccttt agagtcacct      6540
     gtcttacact cgtttgtccg gaaatatcaa wtgcataagt gtaactcgta ctgtcaacgt      6600
     aaatatcgcg ttaaacaaaa aatgtatact aaatgtcggt ttggatttcc gcgtaaagtt      6660
     accgacgaat tgataattaa tgacataatt tccacaatcg cgtctagagt taaaggtttc      6720
     ggtccgaaac gtgtttacga cttgcccaga cagagaagtg aggttcgcat taacgactac      6780
     aaccctgtcc ttctattagc ttccggcggg tttaacgttg acgtgcaatt tgttaaagac      6840
     ggagatttga gattagtcat ttacgtaact agttatatat ctaaaaatga aaaaacggaa      6900
     ttagaagatt tgtgggctga tatatgtaaa gaatcgaata aaaaagcgtt gtggagttta      6960
     ggtttaaaaa aattaacgca tcgtcagatc gggttatacg aaacagtgga tcggttactc      7020
     gggcatcatt tgtacggtaa atcggaagat atgagatata tcagcaccac gtttcgcgag      7080
     aatagaaaac tatgtttaaa accgtataac caactacaaa atatgccggc taattccacg      7140
     gatatatatt tgaagtcatg gctaaacgac tactatccga atcgacccga cgatctagaa      7200
     aatttaaact tatacgactt ctgtcgttat tacgatcttt cccgcgatca attagaagcc      7260
     gaaaaccgaa taaaattaaa aaataatgtt attttaagaa agcgtggcaa accttacgta      7320
     attcaacatc cgatttacaa aacgttaaat acagaacaag accgcaataa gtattatcat      7380
     tcccttttac ttctttttaa accgtggcga aatgaatcgg atattttaaa aggttttcgg      7440
     acgtaccaag aagcgtttga scattattcc gcggaattaa aagaggccat gacttaccac      7500
     gataaattaa ttatgattga agaaggaatc aaagaacttc agagtaaaat tgcggaattc      7560
     aaagaagaga atttcattaa tttagaagag gataatatta tccgagaagt gcaggatgca      7620
     gacgtggcga tgttggaagt ttgcgcggcg atgtacacta gcattgacga tcgcgataat      7680
     aaatttaatt taaacgaaga tcagagccgg atttttaata aaataactaa aacacttatc      7740
     gaccaaagtc awaataaatg caatagtcaa ataaaattat tcgtctctgg tgtaggcggt      7800
     acgggtaaat cgtatctctt aaaagcgtta aaagtttgga ttaacaatac atttccgcct      7860
     aagaaagaca ctatttcggt ggctataacg gctccgaccg gcctggctgc atataatgta      7920
     aatggcgtca ccatttaccg gcttttgtcg ctcccggtag agcaccaaca aaccgccgaa      7980
     tataataaat taaacgtcga aagctgtcgg gcgattaggc acgttcttaa agacatgaaa      8040
     ttattgataa tcgatgaaat tagtttagtt tcgagtctcg ttttcgctta tattcatctt      8100
     cggttgacgg aaattgctaa aaataatgaa cctttcggta attttaatat tttacttttc      8160
     ggtgatttgt tacaattgca gcccgttaaa ggtaatcaag tttttaaaaa gttaacccgc      8220
     atcgaatgta aatccaaact cggatctatc ggttctgttg atctttggtc gatgttcgaa      8280
     tacgacgaat taaaaattaa tgtaagacag aaaaatgata aaagcggttt cataaatacc      8340
     ttgctcaaca ttcggtcggg taaaatctgc gaagaagata tcgcactatt aaactcgcgt      8400
     gttttgccaa ataatgattt aaataatgta attcaaaatt ataaagaatt actcgattcc      8460
     ggtagaaatc cgttatgtct cttcgcgact aaagctcagt gcacaacttt taataaactt      8520
     tattctgata aattcgcgaa agaaatagtt acaatagata gtatcgatga aattgattat      8580
     aattctaaat tatcgaataa aaaaactaaa gatttgaact tgataattaa taaaatttcg      8640
     gaagacgtct ctcgtacggc taatttatct aaaacaataa atttatttgt tggcgcgaaa      8700
     ataatgatta aaagaaatat cgatattgct aacggaattg taaacggaac aataggtgca      8760
     gtggaacggt ttgtttataa aggaaacgtc gtagattctt taatcattat cgtgaataac      8820
     aaaccctttt ctttagaaag ggtaaaagcg cgatttctgt tgttaaaaaa tatttacgtg      8880
     cataggaaac aatttccggt gactctttcg tacgcggtaa ccatccacaa atctcaaggc      8940
     ttaaccttgg attgtttatt cacgagttta ggaaaagaag tgtttgcacc gggcatgcac      9000
     tatgtagctc tctcgcgggt cactaattta aacggtttgt atttaattga tttcgattcg      9060
     tcaaaaataa aagtagatac ggacgcgata agtgaatacc gtcgtttaaa taaaatgatc      9120
     caatcaccat gtttgcaaac tgcgaataat aatatttgcg tttcccccac catcaattta      9180
     acaaaaaaag aatcccttct ccaatcaaat gttaatcgcg aacttttttc taaaacggaa      9240
     atatttggct taccaaattc tgacggcgtt tcatgttacg cgaatgttgt tgcacagtgt      9300
     ttgattaata tagattccgt taaatttaac ctaacgaata acctcgtcaa taatataaac      9360
     ataacttttc cggatccaaa aactcgcgat aactaccaaa aagtgagtgt aacttgcgaa      9420
     ttatttaata ttttaacatc cggaataact cgtggtgcca aaaaacctaa taccaaaaga      9480
     ctccgcgaat taattgctca cggtagcgac gtaaacttca acgctaatat tcagcaagac      9540
     gcgcaagaat ttctatcgtt cgtaataaac gctttaaaaa cagaaaataa cattccgagc      9600
     aggttatttg attgtacagt taaattcgtt mgaaaatgtt tcaattgcaa tagttattgg      9660
     gatgacgttc ccattaatcc tgaggtaatg tactttctag aattcggggt tctccaaaat      9720
     aacgagccgg ttagttttca aacgttattc gactataaat tatcggatat aacttgttca      9780
     gaatgcgggg aaaataaaat ttatattcga agtaaattaa attcggtatc ggattatcta      9840
     atagtaatat taaagcgtta tcaaggaaat cgtgttttaa atgaaatcca ctctttcgat      9900
     gaaaataatg ttaawattga cggttttaat ttcacactgg cgtccgtgat ttaccactac      9960
     ggttcggacc ttaattctgg ccactacgtt tgcgcggtaa aaagtccaaa taattcgtgg     10020
     actttgttaa atgacgactt tattaattat aattttaaat ttgatccggg tttaaaagac     10080
     gcgtatattt tatttttaaa atcaataacg taacgtgctt aaaaaaaaat ctatattttt     10140
     agtaaaactt aaaatatttt tatatcgaat tttagccgtt ggagagccag cagatgacat     10200
     ttggactgac tgaaaatatt ctatttgata ttattaattt atttgtgcat gtttctgttt     10260
     tttgaagtaa aaaaattgtt tacatagaat atgtttttcg caatgaatac ctctgtttgg     10320
     tcctcacata ctatcacaat agtaagtgac aacaaattta ttatgcccac ctaagttttt     10380
     atactatttc acttaagatc taataactgt gttcattttt tgtttttagt ttttatttaa     10440
     taacttgaat agttgatggt acgattctat accttaggtt ccatgtctca agtcaatcac     10500
     tcgccttgaa agaaattatt gcttcatttt cgatgtcatt tcccattttg taatttattg     10560
     tatttaatca ggccaaatat atttcaaaca acaataatat aaaaagaaga tgacgcaatt     10620
     tattcaattg taatttacat ttatatttgc gaataaaaca aattctatgt cttatcgtac     10680
     gatatttata agttaatttc tgtattttat ttaattgcat gttttaagtt tgtatatatc     10740
     atttgaatta gttttcttat accgaatggc caaaaggtca tcacttaata attcaatatt     10800
     cttaattata tggttttgat gttttactta tctttaaatg aacctttcac agttccagcc     10860
     ctataagcag ttaatttaat tacataatgg aattgaattg cactcaactt cttgtaactt     10920
     tttaaatatt acgatcgttg tttcttctaa attatgaagg aaacttttat ttatgaactg     10980
     aatttaattt tatgtttgat gcagttgtaa gatttgcaca actaattcaa aagaaacaat     11040
     ttattatatt aaataaaaaa aattgtccac actgtgaaag atttgtttaa aaataattat     11100
     attattattt atttacatat ttttgtactt ttattttaaa tgtgagacta aactaactga     11160
     cggactaagt ccgccaagcc ggtcccaagc ccaggtgaga aaggatgagg ggtccgtcgg     11220
     agttacttat gtttcaggat gtaaaggcta actatacgca gagccaggag agggaggata     11280
     tattcataaa tgtttatgct gtgtaaatat ggtattgttt gcaaccctct ataaaactat     11340
     aaataaatct atccaaaagg tacaaaaatc tctttaacaa aaactttcag tttaaaatgt     11400
     taagtataag ggttgattaa acgccaaaag gtacacaaat cagcaggtaa ccaacatttc     11460
     attaatactt cattgatatc attaacctaa ttttactgta ttaacttttc attaatattt     11520
     tttagaattt attacgtgtc ccagaccctt atgctggcca ttttattcat aataattttt     11580
     ttgatataat aataaaaggt gagtaatatc atcattagtt ataaaaaggc actttacttt     11640
     aactgtaatc taaattatta ttgcgatttt tctttttagg cgctttattc tgaataatca     11700
     tcacactctc acattcaaat ggaaaaggga aagtaggagt tggtctattg ctgctgaaat     11760
     ctgaatcacg gatttaaaat aaattgaatc ttgaattagt cttactgcag aatatatgag     11820
     cacaaattat gcagttaata acaaataaac aatacttgta attataattc atttgcaaac     11880
     tttaattgaa tgtagtcttt aattgagtac ttatcaaaga cgttttgtta tcaaataatt     11940
     agtaaagcac tttaataata atttttattt atttatttat ttaaataata attgccatct     12000
     gaaaaatata aatatcttta ttttgtttta catatatgta tataaccttc agagtaatcc     12060
     atctagggat aaattaattt aaaaatatcc ttaattacgt tgtatttatt tagttagtat     12120
     atactgtata ataagaaaag taatgtaatc gcctattttt tcaggcggta tttaacgtcc     12180
     atctaccaat taggtgacgt ggacaggggc gaaagctcat aatttactaa aaacaatttt     12240
     ttctgacaaa taaaaagtag tcttactggg gttctaccac ttacattgtc acgctcttga     12300
     ctacaagacc aacgcccgcc cctagtatat caatatttaa atctatatct ataatataag     12360
     tataatatat atacaaatat aagtaaacaa attaaaagtg taattaaaga taactataat     12420
     aatatttaat attaataaac catgttaagt attaattatc tgttattttt aaagaagtgt     12480
     acttggcaaa ttgtatccaa ctaatttaat caaaggatga acttaaatca atgattttta     12540
     ggttcatact gatgtaataa tttcggtgaa tgcatttttt aaaaagtatt ttaataattt     12600
     aatttaattt aataattttt ttttaaattg cgtttcatta aaaaacctgt gcattaatag     12660
     atagatacgt ccttttaaaa tcaatctaaa ttagatgaag cgagccttct cgcagcacaa     12720
     aaattattat gaataaaatg gccagcataa gggtctggga cacgtaataa attctaaaaa     12780
     atattaatga aaagttaata cagtaaaatt aggttaatga tatcaatgaa atattaatga     12840
     aatgttggtt acctgctgat ttgtgtacct tttggcgttt aatcaaccct tatacttaac     12900
     attttaaact gaaagttttt gttaaagag                                       12929
//
ID   Helitron-2_SIn repbase;    DNA;    INV; 4378 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4378
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 316-316 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           10..4359
FT                 /product="Helitron-2_SIn_1p"
FT                 /translation="MPRRKIERTLEEEEEFRRRRREKNVEINVVVVRMRKQ
FT                 QVIIVYEIYVGDIRVFELHEEIIEENIEEIIRVNTTNTVPIRQQRHAEYQS
FT                 HYRSRRKQMRRLDINRLLIDDINEYYIGSMNISCIHCNAKHFAAEKISNKG
FT                 NSFHDCCSHGTVYLESLPQSPQFLRNLFDGTHIKSNNFFKHIRSYNSSFSF
FT                 ASFNANLVNFPNRRPGPYCFKIQGQIYYQINTALYAAQNEKPSYGQLFIID
FT                 SNEAINYRLTENSELDLEIIQNLERIMRECNAFAKSYQMMGEELEIQRRLE
FT                 IESGELLPELQLLFTLKPGIDRRRYNAQRTNEVAAVFRTTADGEIPESYVT
FT                 VRNRSTKTLQNVSTMDPNVEPWXYPLFYPYGTQGWHCNLTKLNSNKRXTRG
FT                 QYIKYRMAIRDEFNVFILGRRLFQQWLVDSYVKIEKDRINYCKNHQKELRX
FT                 ETYQGLRDYIRTMANNLNGRIGKMVILPSTFIGSPRNMLQNYQDAMAIVSK
FT                 FGKPDLFITMTCNPKWREIEENLLHGQQASDRPDICARVFNIKKDYLIDLI
FT                 IKQKFFGEVAAYVYVIEFQKRGLPHIHMLVTLKYNFKITTPQIVDKYISAE
FT                 IPDPNENRTLHNIVMKHMIHGPCGDWCLVNGKCSKHYPKPYQEETRMDEDA
FT                 YPYYRRRNNNKSFERPGGYVVDNRYVVPYCPILSIIFNCHINVEVVSSIKS
FT                 VKYLYKYIYKGHDAATIIIEPETNNVIVDHDEIRNFIETRYVGPVEACWRI
FT                 LEKKLQDKSHTIFRLPVHLPNEQNVIIENEANEEAMTSALNQVTMLIDYFS
FT                 LNSRDEEARQYLYVEIPRYYTFKKEKINGRNVXYWAKRKSHYNCIGRIYSV
FT                 SPTQIELFHLRLLLLTVKGATSFDDLKTVNGEKCQSFSAACLALGLIEDDD
FT                 EWKRAMNEAVGWMMPRQLRRLFVRILLHCQPLHPEELWENFKAAMSEDYIR
FT                 HFGLIQGQKKAYTQINTMLCAEGKSLADFPQMEQXIDNDIENDYITLEEAM
FT                 EVGTRQYEQLNNKQKEIVDLVLNELDTNNHDNNCIYIDGPGGSGKTFIYTT
FT                 IYHLAKIRNKHICSMAFTGIAATLLPAGKTVHKTFGLPVPLYADSSSNIKI
FT                 QSKEAHYLKETDIFIWDEAPMAPRYALEIMDRTLRDIMNNDLPFGGKIIVL
FT                 GGDFRQLLPIKVHGTRSEIVNLSIKFSSIWKHFINFSLTENMRVLPEETEF
FT                 AKFLLDMGDGILNDSNDNIQLPDCCIAPINADIVQDVYSDLIRNKEFDKMA
FT                 KCAILSARNVDVDEINKRVVELLDTFEERIYTSIDSTENCDDNGDIGEALL
FT                 PEYLNTLSPSSLPPYELRLKPKCVIMLIRNLSINEGLCNGTRLMIIELADH
FT                 LLKCKILTGDKIGDIVFLNRITLYCENIYPFTFKRRQFPIKLAFAMTINKS
FT                 QGQGQTFDSVGIDLRKDVFNHGQLMLLFQEYVLGKH"
XX
SQ   Sequence 4378 BP; 1590 A; 614 C; 752 G; 1414 T; 8 other;
     ttttgtaaaa tgccaaggcg naaaatagag cgtactttag aagaagaaga agagtttcga        60
     cgacgacgtc gtgaaaaaaa cgtggaaatc aacgtcgttg tcgtcagaat gcgaaagcaa       120
     caagtaataa tcgtatatga aatttacgtt ggtgatattc gagtattcga gttacatgaa       180
     gaaataattg aagaaaatat tgaagaaata attcgagtaa atacgacaaa tactgtacca       240
     atacgtcaac aacgccatgc agaatatcaa tctcattatc ggtcacgaag aaaacaaatg       300
     cgtcgtttag atattaatag attactaatt gatgatataa atgaatatta tattggttct       360
     atgaatatat cttgtattca ttgtaatgca aaacattttg cagctgaaaa aatatctaat       420
     aaaggaaatt catttcatga ttgttgtagt catggtacgg tttatttaga atcactacct       480
     caatctccac aatttcttcg taatctattt gatggtactc atataaaatc taataacttt       540
     ttcaaacata ttcgtagtta taatagttca ttttctttcg catcatttaa cgctaattta       600
     gttaattttc caaatagacg accaggtcca tattgtttta aaatacaagg acaaatttat       660
     tatcaaataa atacagcatt atatgctgct caaaatgaaa aaccgtctta cggtcagctt       720
     tttattatag attctaatga agcgataaat tatcgtctta ctgaaaattc tgaattagat       780
     ttagaaatca tacaaaatct tgaacgtata atgcgagaat gtaatgcatt tgctaaatct       840
     tatcaaatga tgggcgaaga attagaaatt caacgacgat tagaaataga atcgggagaa       900
     ttgttaccag aattacaatt attatttacg ttaaaaccag gaattgatcg acggcgatat       960
     aatgctcaaa gaactaacga agttgcagcc gtttttcgaa ctactgctga tggagaaatt      1020
     ccagaatcat atgtaacagt acgtaataga agtaccaaaa ctttgcaaaa tgttagtacc      1080
     atggatccca atgttgaacc atggatntat ccattatttt atccatatgg tactcaagga      1140
     tggcattgta atttaacaaa gttaaatagt aataaacgaa tnactagagg tcaatatatt      1200
     aaatatcgca tggccattcg tgatgaattt aacgttttta tattaggacg tcgtttattt      1260
     caacagtggc ttgtagatag ttatgtaaaa attgaaaaag acagaataaa ttattgtaaa      1320
     aatcatcaaa aagaattacg tnctgaaact tatcaaggtt taagagatta tatacgaact      1380
     atggcgaata atttaaatgg acgtatcgga aaaatggtta tacttccctc cacatttatt      1440
     ggatcaccgc gtaatatgtt acaaaattac caagatgcaa tggcaatcgt tagtaaattt      1500
     ggtaaaccgg acctctttat tactatgact tgtaatccaa aatggcgcga aatcgaagaa      1560
     aatcttttgc atggtcaaca agcttctgat agacctgaca tttgtgcacg agtttttaat      1620
     attaaaaaag attatttaat tgatttgatt ataaaacaaa aattttttgg agaagtagca      1680
     gcctacgtat atgtaattga atttcaaaaa cgcggtttac cacatattca tatgttagtt      1740
     actttaaaat ataatttcaa aataacaaca cctcagattg ttgataagta tatttctgct      1800
     gaaattcctg atccaaatga aaatcgtact ttacataata tagttatgaa acacatgatt      1860
     catggacctt gtggcgattg gtgtttggta aatggaaaat gttcaaaaca ttatcctaag      1920
     ccatatcaag aagaaactag gatggatgaa gatgcttatc cttattatcg tcgaagaaac      1980
     aataacaaga gttttgaacg ccctggtgga tatgtagtag ataatcgtta cgtagttccg      2040
     tattgtccta ttttatcgat tatttttaat tgccatataa atgttgaagt agtttcaagt      2100
     atcaaatcgg ttaagtatct ttataaatat atttacaaag gacacgatgc cgctactatc      2160
     ataattgaac ctgaaacaaa taatgtaatt gttgatcatg atgagatacg taattttata      2220
     gaaactcgtt atgtcggacc tgtagaagct tgttggcgta ttctcgaaaa aaaattacaa      2280
     gataaaagtc atactatatt tcgtttacca gtccatcttc ctaacgaaca aaatgttata      2340
     attgaaaatg aagctaatga agaagcaatg acttctgctt taaatcaagt tacgatgtta      2400
     attgattact tctccttaaa ttctcgcgat gaagaagcaa gacaatattt atatgtagaa      2460
     attccncgct attatacgtt taaaaaagag aaaatcaatg gaagaaatgt ancatattgg      2520
     gccaaacgca aaagtcatta caattgtata ggacgaatat attccgttag tccaacacaa      2580
     atagaattat ttcatttacg gctattatta ctcactgtaa agggagctac gagttttgat      2640
     gatttaaaaa ctgtcaatgg agaaaaatgt caatcgtttt cagcggcatg tttagcttta      2700
     ggtttaattg aagatgatga tgaatggaaa cgagctatga acgaagctgt tggatggatg      2760
     atgcctcgac aacttcgtag attatttgta cgtatattat tacattgtca accattacat      2820
     cctgaagaac tttgggaaaa ttttaaagca gcaatgtcgg aagattatat tcgacacttt      2880
     ggattgatac aaggacaaaa gaaagcatat acgcaaatta atactatgct ttgtgctgaa      2940
     ggtaaaagtc ttgccgattt tccccaaatg gaacaattna tagataacga tatagagaat      3000
     gattatataa cacttgaaga agctatggaa gttggtacca gacaatatga acagttaaat      3060
     aataaacaaa aagaaatagt agatctcgta ttaaacgaat tagatactaa taatcacgat      3120
     aataattgta tttatatcga tggtccnggt ggttcaggta aaacatttat atatactact      3180
     atatatcatt tagccaaaat tcgaaataaa catatatgtt caatggcttt tacgggtata      3240
     gcagctacgt tattaccagc aggaaaaaca gttcataaaa catttggatt accggttcca      3300
     ttatatgctg attcgtcatc taacattaaa attcaatcta aagaagctca ttatttgaaa      3360
     gaaacggata tttttatttg ggatgaagcg ccaatggcac cacgatatgc tttagagatt      3420
     atggatcgaa cgctgcgtga tatcatgaat aatgatttac ctttcggtgg aaaaattatt      3480
     gtattaggtg gtgattttag acaacttctt cctattaaag tacatggtac tcgaagtgaa      3540
     atcgtgaatc tttcaatcaa atttagttct atttggaaac attttataaa tttttcttta      3600
     acggaaaaca tgcgagttct tcccgaggaa actgaatttg caaaattttt attggatatg      3660
     ggagatggga tattaaatga ttctaacgat aatatacaac ttcctgattg ttgtatcgca      3720
     cccattaatg ccgatattgt acaagatgta tatagtgatt tgatacgaaa taaagaattt      3780
     gataaaatgg cgaagtgtgc gatactttct gcaagaaatg tcgatgttga tgaaattaat      3840
     aaacgagttg tcgaattatt agatacattt gaagaacgaa tttatacaag tatagatagt      3900
     actgaaaatt gcgatgataa tggcgacatt ggtgaagctt tgttaccaga atatttaaat      3960
     actttatctc cgtcatctct tccaccttat gaattacgtt taaaacctaa atgtgttatt      4020
     atgttgatta gaaatcttag tattaatgaa ggtctttgta acgggactag actaatgatt      4080
     attgaacttg ctgatcattt actaaaatgt aaaattttaa caggagataa aataggagat      4140
     attgtttttt tgaatcgtat aacgttgtat tgcgaaaata tatacccttt tacttttaaa      4200
     agaagacaat ttccgataaa attagctttt gctatgacaa ttaataaatc acaagggcaa      4260
     gggcaaacat ttgacagcgt tggaatagac ctccgtaaag atgtatttaa tcatggtcaa      4320
     cttatgttgc tttttcaaga gtacgttctt ggcaagcatt aaaagtttat cttggtaa        4378
//
ID   Helitron-3N1_NVi repbase;    DNA;    INV; 4960 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.05, Created)
DT   13-MAY-2009 (Rel. 14.05, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-3_NVi; Helitron-3N1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4960
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(5), 964-964 (2009).
XX
DR   [1] (Consensus)
XX
CC   The ~1-kb homology at the 3'-end  with Helitron-3_NVi suggest
CC   this element is a nonautonomous helitron.
XX
SQ   Sequence 4960 BP; 1702 A; 891 C; 709 G; 1654 T; 4 other;
     ctagcaaaaa acgctcgctt cgctcgcgat taacaaatta attgtgatga tatttaaggg        60
     gatgtcgtcc caaaaaacac tgtttttcta ttacataaaa ctttttgaat aaagtttgct       120
     aatgaaaaac cgagtctgta gcgccgtagt gttaaggtag ttcacttggc ccagtggtgc       180
     tcaattcgag gttgaattag aaaattaatt tttttaaata ttatgcagtg ttatcaagtg       240
     tgaaaactct agaattttta gttttgtata tcaaaatatt gatagaaagt gtttagagca       300
     tcaaatatcc tcaaaactta gaaaagtgag aaacactgcg cgcatatata gatatactga       360
     tagcatagaa ttgaaacttt cgattgctgt aacttttcaa aaagcaccgc ttgccctatc       420
     aaatttttat ttccttgatt tgtattatga ttttacatca tgacctagtt tttgaaaaag       480
     atgtaagatt tattttcttc gtaattaaac aaaatgtaca ctaaatttag acttaaaaaa       540
     tcataccgct tggrgggtaa aaaattttac cacgttatag agggcactta ataggatata       600
     tttacaaaat tgcaagaata ttaatttttt gagtgaacta ccttaagttt aatgaatcgt       660
     tctaccgaaa gaaacttcgt cgtactcatg cgattgcagc gccaacctta aaatctaatt       720
     ttacataaaa ctttttaaat aaagcttgca aatgaaaaac cgagtctgta gcgccgtagt       780
     gttaagttta atgaatcgtt ctaccgaaag aaaaattcga tcggactttc tgtttttcta       840
     gaagtttgaa aatacaaaat actccgtggt ggatttgcga agcttttgcg ccgacatccc       900
     cttaattatt tgacgtgtca ttattaaata tactgttaaa tattagatgt acactcgatg       960
     gtagttaatt cttgtggaac gtttttgaaa tgctccaata agattgccag attgataaat      1020
     tctaaccaat caaaagcacg acttcggaaa cgtttcataa gaattaatta ccgtcgagta      1080
     taaatgaata tattcaatac agccaacatt ctataaaagt agttatagct actagtacac      1140
     aggaccggct ttaaaattat agaataaaat agaaataaat tttgaatatt aaaaaatgtt      1200
     tttaaactct ttgtaattat ttgatgacag tattaattat attaacaaaa tctaacaaaa      1260
     aaataatatt aattaaacat tttttttatt tacatttata aaataatgta aattgtgaga      1320
     ttataacaat cataacattt atattctgta ctaaaatgta atacataata cgatatttac      1380
     ttttatatta aatgataacg atatcttcaa tccctaacga aaaagaaaaa tgaaaacaat      1440
     tgaaaaaaaa cgttatgaac tgcagatgat agcagaaaaa tgtcggaatt gagacacaga      1500
     taacagtaat cttttgttgt cttcagtttt atttagtttg ctagatactt cagttggatt      1560
     tctttttttt tcaggtgtaa aattttacaa tttagaaaat aaataaaaaa atgaatacaa      1620
     cagacaataa ctattaataa gtgaagacaa cagttttttc atagttcaaa gcagttttct      1680
     tcattttata attgctgtct tctacgttca ctagtttgtt cccaatcaaa acagctatct      1740
     tcggatttct acacattttt cttaactttt ttaaaaacac gcctttaata acataaaaaa      1800
     gaaaattaac ttttaaaaaa gtaaaaggtt aggcgagttt gatatattcc gcaacgaaat      1860
     aacagataaa aaagaactga gatcaatcaa ccaaagtcaa gtttattata tttaatcata      1920
     atgaagcaac aacatttttt ttggtcaata aagggcttac ttaacttaaa gttaaattat      1980
     atactgatca attaggaaga attctcaaga tacttactac gtaacttgcc atgaccgttt      2040
     cattgtactt atggtgtttt tatgacgtta taataaaata cgtaaagaga aaattttagt      2100
     tgttcaccaa taaacaaaat gaaacggtca tggcaagtta cgtagtaagt atcttgagag      2160
     ttttgaagtg aatacttcta taggctcgcc gggtacacat tttactgggg agtgaatcgg      2220
     cgagcggcga ccgtcacggc ggcgcgacag accgatcgtc acgaaagcag cggcagctct      2280
     ttccccccac cacgcactct tcgccgcgca tgttagcatg ctcgcacagc tcagctcttc      2340
     ccttacatat cagccgcact tatttacaca cgctgcaagc ggctatcgga ttttctcgga      2400
     tttcggacgc gctaatatag cggtaccttt tcatggtact tcaatttttt tgcgtcaact      2460
     agacgacgtg acttttttaa tatgcgcaaa acgtttgcag gtaaacatta ttgacttatt      2520
     gcggtaaaca ttatcactgt atgacacgcc ctggcgtaaa cctcgattta ccgcacgctc      2580
     gtgcaaaaat gcactctcta aatctcggat tacgcacgtt gtgtcataaa atatcgtacg      2640
     atactattat tcttattata ttttctttat tcgtattata ttttgcctat cctaaattta      2700
     ctagttgatc aatgattact tcacctaaga ttttttaact ctctgtcaaa gttgcgatta      2760
     agttggaaaa ataagaaaat ggcggcgatt tacgcatcaa aatcactaaa tcaaaaaatt      2820
     ataaaaattt atcaaaaaag tcacaattaa atgtatcctt gtagattagt actttgcact      2880
     caacgaagac gcatttgaat ttgcgtcgaa gactaattca tttcagtttt gccgcgaaga      2940
     ctatagtata tatattttga actcttgcgt cgaagactat aaagtacatt tgcagtcccg      3000
     ctgcgaagac tagtacattt ctcacttcgt atacgtttga ttctctggca acgaaactat      3060
     tcaaaatttt ccaaaattcc acaccatcta tttaagtatt cacttctatc ggctgtcccc      3120
     gagacagcca catttttcta attgatcagt atataactta acttaagtta agtaagccct      3180
     ttattgacca aaaaaatgtt gttgcttcat tatgattaaa tataataaac tggactttgg      3240
     ttgattgatc tcagttcttt tttatctgtt atttcgttgc ggaatatatc aaactcgcct      3300
     aaccttttac ttttttaaaa gttaattttt tgagatttta gtccttttta gtaaattttt      3360
     ttaggtattt catatttctc ctaaaaataa aatataagca tctttagcac cttttgacca      3420
     tggttttatt gtaacatttt tatcactaac atgaaatcac tgattgttct gatacactac      3480
     cctcgaatga tttctacacc tagacaccaa aaccaagtgc gaactaccta gacctcgtca      3540
     tcggccaccc tgtacaccaa gacgccgtcc acgtatgatg tatgtaccta gaaataaaaa      3600
     aaccacggag cgcaccacct agacctcgtc atcggtcacc ctgtacacct agacaccaty      3660
     ctcgaattat ttttatayct agacacaaaa aaccacgaag cgtaccacct agacctcgtc      3720
     atcggccacc ctgtacacct agacaccgtc ctcgaatgat ttatttacct agacaccaaa      3780
     aaccacggag cgcaccacct agacctcgtc atcagccacc ctgtacaccg agacaccgcc      3840
     ctcgaatgat gtatttacct agacataaaa aattacggag cgcaccacct agacctcgtc      3900
     atcggccacc ccgtacacct agacaccgtc ttcgaatatc catttatcgt ctccatttat      3960
     ctcgaccaaa attgcagatt tcatcttgtg atatgcatgt gcgtcatttc atattcacaa      4020
     acacatagaa ttaaaaaaag attatacctg cacaaataac tatttgcagc atccctttga      4080
     tctcgaccaa aactgcggat tttatcttgt gatatgaatg aatacttaca gcattcgtca      4140
     ttatatgtca cgaacacaaa actttaaaaa aacgattata tctgcacgag taattatttg      4200
     tagcatccct tttatgtaaa tcgaatctgc agataacatt ttgtgatatg catgaataca      4260
     taaatcgtca tttcatattc acaaacaaat aactttaaaa aaaattatat ctgcacaaat      4320
     atttaatcgc agcatccctt ttatctggac caaatttact gattacatct tatgatatgc      4380
     acgaatacat aaagcattcg tcatctcata ttcacaaata gatggcttta aaaaaaacag      4440
     catatctgca caaatattta atcgcagcat ccctttcatc tggaccaatt ttaaaataat      4500
     ctttattcat ccatgtatat atatatatat atatatatat atatatatat atatgtcaaa      4560
     aatataaaaa aaaattaatt aattgcgtct atttttttta attgttttaa cagcttccaa      4620
     tctacctgga ccaaatcttg aaaatgtttt ttagtaggaa tgtatatttt tatcatatgt      4680
     acctgtctat accaataaat agttttttta tttataaaat acatcaagtt ttgtggaata      4740
     aatgcaaaaa aaaatccgga cggacagacg gacatttttt aagttctttt actgctaaaa      4800
     actaattgaa atttgataca tttrattttt ttttcggtaa cttgaatgat ttaagttcaa      4860
     agaacatttc taccgtaaaa tagatttaat tttttttttt acgagttttg gagggttttt      4920
     acaaaattga ccaaatataa aattttaata tagtgtagat                            4960
//
ID   Helitron-3_AAe repbase;    DNA;    INV; 6792 BP.
XX
AC   .
XX
DT   31-DEC-2010 (Rel. 16.01, Created)
DT   31-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   Helitron-like sequence from Aedes aegypti: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6792
RA   Jurka J.;
RT   "Helitrons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (30-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. The ORF is corrupted.
XX
FH   Key           Location/Qualifiers
FT   CDS           796..1989
FT                 /product="Helitron-3_AAe_1p"
FT                 /translation="MVKELPRQLDDDCAFNVCIKKHMIHKSSYLSGYVKKG
FT                 TVKAWLNYLVATPLYRRNGITFSEEHLAAIEPVQQLGIPQTANTSFDLEVI
FT                 DASNEVELLIGQQHTLLWNEDKCLEIAPGQNRTPLSIIYDEFAEELSFPDI
FT                 YLGYPRSFNPEVRVTPFMMATSEIRRRDRRGAKPEHILFMAMKIMRLRVSE
FT                 GLKNTFKCMGTANITRAQLQDREFLETCIERNLSFLKSIPNSIQYWQQRKR
FT                 DVFAMIRQLGKPTMFLTLSANEIRWPHLLTVLHKLSNGSSDAGVANIMQQL
FT                 TALQRATLVSEDPVTCCVYFNKLVNVIMQLLSSTRYSPFGKYYVVDYFKRI
FT                 EFQHRGSPHAHILLWLANDPREDMSENMPATVQLIDMLCSVRADDLTETYG
FT                 NQVN"
FT   CDS           2719..5349
FT                 /product="Helitron-3_AAe_3p"
FT                 /translation="MWPHERIKSRKRTKQMDEEELEEDSTDVWTLNIIQRY
FT                 EAREGMDEVCLADFAALYTEERRAKNTYKIRRFPRILRWCGYNMSELVEYK
FT                 REMVLLFLPFRNEVCDVLDRNKFLMLYEDNEAAILAKHKEYDCELNLDQVV
FT                 AEYIRLSDEDDVQQEVANKKRDEYVRTISMEPNDDDINNLPNGPMAAVVKQ
FT                 RANVMSKQEYCEMVRATNAEQRDLILHIIHSLHSFDDSIKPVQIFFTGPAG
FT                 CGKTFTLRILMETINRFSQAHNSQNNSYVACASTGKAAVAIGGTTVHSAFR
FT                 ITMSRRQSSKLSFESLQLYRNAFANVKAIIIDETSMLGADVLNTVHVRLQE
FT                 ITGNYDDPFGGMQIVFCGDLRQLPPVNARPVFKPSVNSMHGAVLWQSLEFY
FT                 PLVQVMRQTNEQFSTILTKIGNGEQLSPDEVVIIESRFRTAEWCQQHVPRA
FT                 IRLFHRNVDVERYNSIALVDREAAECTADDIYSGFKDNSQLAGARTKVHKM
FT                 SVAETGCLPYLLRLAVGTPYMLTTNVDVEDGIVNGAIGELMFVERDEDDTQ
FT                 QQITRLWIKFENDSIGRMLRVKARPLVYSKPGVLKAEWTPIAKRSANISLN
FT                 GGVKCKRVQFPVVSACALTVHKSQGGTFSEVVYNYEKSQEQQLVYVGLSRV
FT                 TSIEGLYLTNPSNDFKFHHGKAAVTPRIKDLRTELGRLNNHRLRTIGEDVM
FT                 ATIASNTSAVMLMSINVQSLNAHSLDITTDRVLNAVDLLALSETWMENGTQ
FT                 TVLAEFDCITQEKRDETRAGGVAIYQNTAASTAAVSHAIDKLSASYDAMLG
FT                 EADKYGDICAAEISVMGTRTLLFSLYISPGMTKTEFVFLIFIINSFLLQAP
FT                 RSSKRNFSWRVIWSCTAKRPCQSS"
FT   CDS           2115..2729
FT                 /product="Helitron-3_AAe_2p"
FT                 /translation="MDQTRILLPITTGDGRLDQLRRAAVSMRDALETKAYD
FT                 SMEAFLVDRNCTYEYYLDVIRSSIRRPTVMLKRSMSELWTNPFNPWIGKIM
FT                 RSNMDLQFVLEEFSCAAYVVEYVNKTNRGISSLHRELIKLQEEHPDHDYNG
FT                 LLKKVSIKMLNSVEMSAQEAAWYLLRQPMSEASRKVLFCLLHIGAGHANSH
FT                 LFYLIGGIHSDDVAT"
XX
SQ   Sequence 6792 BP; 1830 A; 1578 C; 1560 G; 1824 T; 0 other;
     ttaacaattg ctttaaattt tatcattttt attatactgt caaaaactgt gtctaaaagt        60
     tattccccta tcacgttcta ctcgaggaga attcaacacc actcgtacga ttcccgtacg       120
     taccccatca ccacgtcatg ttcgagaaca attaaacgtc ggtgatattc cagtggtgct       180
     tgacgcattt catgattcct catcgtatcc catggaagaa gaagccaacg atgttcctgt       240
     tatcccggaa gaagacgatg gcgatgatcg gtatgaaaat gaggatcctt tgctgtattt       300
     aactcagggt gaacccaact tggaccgtgc tgatcgagaa ttcgataaac gtttcataga       360
     aaacgagttc ggctatgcct gtgacgtgtg tgcacgaatt tggtttcaga atgatctgaa       420
     accaatcagt aatgccgatg gtgccgtgtt gttggcggcc aactatttcg aaactgttga       480
     aggattctca gcgtgtctta cttgtcgaag cagcttgaaa cgtggcctga tccctacact       540
     gtcccaaacg aatggcttta catatccaaa atttccgtca aatctgcctc cgcttgatcc       600
     gatcaccacc agactggttt caccaagaat ctgctttatg cagctgcgcc gtctgcggca       660
     tgcagcaggt ttgtagttta tagtggtatt tttatttata gatatatttt attcatttcc       720
     ctgtataatt tttgtgaaat aggtagtttg gccattattg gtcaaattat caacgttccg       780
     gtggatgtgt ctgcgatggt gaaggagctt cctcggcagc ttgacgacga ctgtgcattc       840
     aatgtgtgta tcaagaagca catgatacac aagtcaagct atttgtccgg gtacgtcaag       900
     aaaggtacgg ttaaggcctg gcttaactac cttgtcgcca caccgctgta taggcgaaac       960
     ggcattacgt ttagtgaaga acacttggcg gccatcgagc cagtgcagca acttggaata      1020
     ccccaaacgg caaatacatc tttcgatttg gaggttatcg acgcatcgaa cgaggttgag      1080
     cttctcattg gtcaacagca taccctgttg tggaatgagg acaaatgtct cgaaattgcg      1140
     ccaggccaga acagaactcc actatccatc atctatgatg aatttgcgga agagttgtcc      1200
     ttcccggaca tatatctggg atatccaaga tccttcaatc ctgaagttcg cgtaacgcca      1260
     ttcatgatgg ctactagcga aataagacgc cgtgatcgac gaggagcaaa gccggagcat      1320
     atccttttca tggcgatgaa gatcatgcgc ttgcgagttt ccgagggatt gaagaacact      1380
     ttcaaatgca tgggtacggc caacataact cgcgctcagc tgcaagaccg ggagtttttg      1440
     gagacatgta tcgagcgtaa tctgtccttc cttaaatcca tccctaactc gatccagtac      1500
     tggcagcaaa ggaagcggga tgtctttgcc atgatccgcc agttggggaa gccaaccatg      1560
     ttcctcacat tgagcgcaaa tgaaattcgt tggccgcatt tgctcaccgt actgcacaag      1620
     ctgtcaaacg ggtccagtga cgccggtgta gcaaatatca tgcagcagct gactgcgcta      1680
     cagcgtgcta ccctcgtaag cgaggatccc gtgacctgtt gtgtatattt taacaaactg      1740
     gtgaatgtga tcatgcagct gctctcgtcc acacgataca gtccatttgg gaagtactat      1800
     gttgttgatt atttcaaacg catagaattc cagcaccgtg gcagtccgca cgctcacatt      1860
     cttctctggt tggctaacga tcctcgggaa gacatgtcag agaatatgcc tgccactgtt      1920
     caactgatcg acatgctctg ctccgtccgt gcagatgacc taactgaaac ttatggcaat      1980
     caggtaaatt gaaagtatct atagtgtgat gagtgatttc ttatgagtat aatgttttct      2040
     aggtccataa acatacgttt acttgcttca aacgcaatga taagcggtgc cggttcaata      2100
     taccatattg gccgatggat cagaccagga tactactccc gatcacaaca ggagatggcc      2160
     gacttgatca gttgcgcaga gctgctgtga gcatgcggga tgctctcgaa accaaggcat      2220
     acgatagtat ggaagcgttc cttgttgacc gcaactgcac gtacgagtat tatcttgacg      2280
     tgatccgttc ctcgattcgg cgaccgacag tcatgctgaa acgctctatg tcagaactct      2340
     ggaccaaccc tttcaatccc tggattggta agattatgcg ctccaacatg gacctgcagt      2400
     ttgtcttgga ggagttctcg tgtgctgctt atgtcgttga gtatgtcaac aaaacaaaca      2460
     ggggcataag cagtttacac cgcgagctga taaagctgca ggaagagcat cccgatcacg      2520
     actataatgg attgctgaag aaagttagca tcaaaatgct caacagcgtg gaaatgtccg      2580
     cccaagaagc tgcgtggtat ttgctcaggc aaccgatgtc ggaagctagc cgtaaggtac      2640
     tattttgttt gttacatatt ggtgcaggtc atgctaattc tcacttattt tatcttatag      2700
     gtggaattca ttccgacgat gtggccacat gagcggatca agtcgcggaa acggacgaag      2760
     caaatggacg aagaagaact cgaagaagac tccaccgatg tttggaccct caacattata      2820
     caacgctatg aagcgcgtga aggcatggac gaggtgtgct tggcggattt tgcagcactt      2880
     tatacggagg aaagaagggc gaagaatacg tacaagatac gcagatttcc ccgtatattg      2940
     cgttggtgtg gatacaacat gtcggaactg gttgagtaca aacgggagat ggtgctgctc      3000
     tttctgccat tcagaaatga agtctgcgat gtactcgatc gcaataagtt tctcatgttg      3060
     tatgaagaca acgaggctgc tatactcgcc aaacacaagg agtacgactg cgagctgaac      3120
     ctggaccagg tcgtagccga gtatatccgt ctgtctgatg aagatgacgt acagcaagag      3180
     gttgctaaca agaagcgcga tgagtacgtt cgcaccatca gcatggagcc gaacgatgac      3240
     gacataaata acttgcccaa tggacccatg gcggcagttg tcaagcagcg tgcaaacgtc      3300
     atgtccaagc aggagtactg tgagatggta cgtgcaacaa atgcggagca acgtgatttg      3360
     attttgcaca tcattcacag tttgcacagc ttcgatgaca gtatcaaacc cgtgcagata      3420
     ttcttcacag gcccggcagg ttgtggcaag acgttcactt tgcgaatact catggagacc      3480
     ataaaccgct ttagccaagc acacaattcc cagaataatt cgtatgttgc ttgcgcatca      3540
     actgggaaag cagctgtggc tatcggagga actacagtgc attccgcctt tcggatcaca      3600
     atgtctcgga ggcaaagttc aaagctaagc tttgagtcat tgcagttgta ccgcaacgct      3660
     ttcgcaaacg tgaaagctat catcatcgac gaaaccagca tgcttggtgc tgatgttttg      3720
     aacaccgtcc acgttcgact ccaggaaatc accgggaatt atgatgatcc gtttggtgga      3780
     atgcagattg tattttgcgg tgatcttcgt cagctacctc cagtaaacgc acgtccagtc      3840
     ttcaagccga gtgtcaactc aatgcacggt gccgtcttat ggcagtctct cgagttctac      3900
     ccgttggtcc aggtaatgcg acaaaccaat gagcaattct ccaccatcct taccaaaatc      3960
     ggtaatggag agcagttgtc tccggacgaa gtcgtcatca ttgagagcag attccgtaca      4020
     gcggagtggt gtcagcaaca cgtgccgcgt gcaatccgct tgttccatcg aaacgtcgac      4080
     gtggagcgat acaattccat cgcattggtg gatagggagg cagctgaatg cacggcggat      4140
     gacatttatt ccggtttcaa ggacaactct cagctggctg gtgctcgcac aaaggtgcat      4200
     aagatgagtg tagcagagac tggttgccta ccgtacctac tacggcttgc tgtgggtact      4260
     ccgtacatgt tgacgaccaa tgtcgacgtt gaagacggaa tcgttaacgg tgcgatcgga      4320
     gaactaatgt tcgtcgaacg cgacgaagac gatactcagc agcagatcac taggttgtgg      4380
     ataaaatttg agaacgactc cattggaaga atgttgagag tgaaggccag accactggta      4440
     tactccaagc ctggtgttct gaaagctgag tggaccccaa tcgccaagcg atcagcgaac      4500
     attagcctca atggtggagt taagtgcaag agggttcaat ttccggtggt gagcgcttgt      4560
     gcccttactg tacacaaatc gcaaggaggc accttctcag aagttgtgta caactacgag      4620
     aaaagccagg agcagcaact ggtttacgtt ggcctttcaa gggttacttc catcgaagga      4680
     ctgtacctga cgaaccccag caacgatttc aagtttcacc acggaaaagc cgctgtaacg      4740
     ccaagaatca aagatctccg aacagagctt ggacgtttaa ataaccaccg tctgcgtacc      4800
     atcggcgagg atgttatggc aacaatagca tcaaacacgt ctgctgttat gttgatgagt      4860
     ataaatgtgc aaagcctgaa cgcacactca ttagatatta ccacagaccg tgttctcaat      4920
     gccgtggact tgctcgcact gagtgaaaca tggatggaaa atggcacaca gacggtcctg      4980
     gctgaatttg actgcatcac ccaagagaaa cgtgacgaaa caagagctgg cggtgtggcc      5040
     atttaccaga acacagctgc atccaccgcg gccgtttctc acgccatcga caagctcagc      5100
     gctagctacg atgcaatgtt gggtgaagca gacaagtacg gtgatatctg cgccgccgaa      5160
     atctcggtta tgggtactcg cacgttactg ttttcgttgt acatttcacc aggtatgact      5220
     aaaacggagt ttgtgtttct cattttcata ataaattctt ttcttttaca ggcaccacga      5280
     tcaagcaaaa gaaatttttc ttggcgcgta atctggtcct gtacagcaaa acgtccatgc      5340
     caatcatcgt aacgggggat ttcaacatcg acgtgttgaa gccggaaaac cttgagttca      5400
     tcgatttcat gaggacatat ctgcacctag atttggtctc agatcgatct caagcgacta      5460
     ccatgggagg gtcatgtctg gatctgacgt tcacccggaa cattcgcgta cagtgcaaga      5520
     gatactgtgc gtatttctca taccaccgac cgatactctc agtgcttgag atttgaacgg      5580
     tctgccaatt gagaatctcg gcctgcctcc agttgagctc tgctttattc tccccccgtc      5640
     gttgacttcg ttctcactcc gtccatcaat acgctttctt catgatgttt cgtgacccgc      5700
     gattcaaggc tcaactatct ggtaaataga cttctaggct aagatgtaca aaatatctaa      5760
     ttcttttcgt tttcttttac atcgttcagc gttaacaatg aaacattgtc cagtaaattg      5820
     tttccatcga caactattcc tgctgccagt gcatctctga cggtagagtg tcggctttcc      5880
     tcccgttttg ctgtgcctgg ttttgaaatc tccaaccttt ctttctttgt caaatccttg      5940
     catcgtgaga gaagacgttt cgtaacccgc gattcaaggc tcgataatct ggtaaatgtg      6000
     atttgatggt ttgaggtttg cataatatgt aattcgtttc attctcttcc aaatcgttca      6060
     gcaccaacag tggaacatcg tccattcgaa ggtttcataa actgcagttg agctctgcct      6120
     agtgcacagt ctgtttctgt gacgaagttc cgattgattt tggatatcaa atcatggcca      6180
     ccaacctatc gcaacattat gcttgattct tctgttgatg cgctcttcaa aatatcgtgg      6240
     atgttttgca acccgtgata aaaggctcaa ccatctggta aatataattt aacgcaaaac      6300
     tttacaaaat atataattct tttctcccac tctttcagag tcaacaacga atccgtcctg      6360
     tcgagtcatc tgatgggcct cgaccatcct tcggtcacac cgtcaacatc atctttcaca      6420
     acaaacggcc tttttcaagg ccaccaacat ttcgataaag agttagttaa acgatatttc      6480
     ctattatatg tatcacaaat atcactttaa tcctccacat cgaccatcga gaatgatggt      6540
     tttggtaaaa ttgaaaatag gtacctgtgg ctaaatctat atatgcactc aatttaaaga      6600
     aaagatcgtc aaatttcggc ttgtgagagt tgtcaatata cacagggttg gacaagtttt      6660
     atactcttta taccattggt ttccctaaca tagacatcaa atcaatatat ccagccaatt      6720
     aatgaaccaa ctaacgttat ccaacgtcaa cttggcggtc gtatctcgga aacaacctct      6780
     tacttttttc tt                                                          6792
//
ID   Helitron-3_DRh repbase;    DNA;    INV; 4124 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4124
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1389-1389 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1255..3849
FT                 /product="Helitron-3_DRh_1p"
FT                 /translation="MDGSGCVKKRRHPLILRWVRFSINSSPSDYFREHLML
FT                 FYPWRNEEAELLSNDIENTFRVNHEAIKTMKRNYDVFDDMELERVLEDLQE
FT                 DRGDNAPDAEEPASQFLDEEFRALAVPNIERNVNILQDDNAINNPEEDGEL
FT                 QLIRLPPLVSNDDLCSLTRSLNYKQRQYYAHVMHNVVCKNIFYEYVGGGAG
FT                 VGKSRLISTIYQSVTWRANKLPGATDSAKVLLCAPTGKAAFGIGGLTLHSV
FT                 FSLPINQASGPLRPLSNDSLNTIHCKLIDLQLIIIDEISMVGSKMLSFSDQ
FT                 RLRQIFRSPDLSFGGKSIIVFGDLKQLSPVGDSWIFSERTINPYSVLAGNS
FT                 LWSNFKYFELTEIMRQRGDHAFAQALNHLSEACMTIADIELLKQRVVSPSE
FT                 VPDDAIHLFSSNEEVNNYNSLKLAQIGTEELVSTAVDTVKTANISTRNREN
FT                 TLRYAQNMKTSETQGLPYVLHLKTTAKYMVTVNIDTSDGLVNGATGQLMLI
FT                 DHCLVNGSNLVTRLWIKFFEPTVGAIARSKVRNSPDPEWTPIVKASRVFQC
FT                 GRSEHASVDRKQFPIVPAEAITIHKSQGATYSKVAVHLKRGIKRASLYVGC
FT                 SRATSASGLFLLGDFVPPTRFGAPNVQDELQKLREEKFLTTHYEFVVNRNE
FT                 DISLYYHNVESLRSHREDIFNDPIICSANFLCFVETWTLPSEDFSSQGFDI
FT                 IRRIDSNRLNGIGKNGIMIYAKRNIAENVVFLFETNKSSSSRTIYQSIAFK
FT                 YLNTSFIVVYRNPTFPIAQFRNEVMSDVERIRSLENNSELVILGDFNICRS
FT                 TTTDRLEEALNEFNLIPINNSATTKHLTQIDWIFAENELRNAVALTYKTSY
FT                 SHHDGIFLKYRY"
XX
SQ   Sequence 4124 BP; 1305 A; 751 C; 825 G; 1237 T; 6 other;
     attgggaggc tgagaaaaaa agttatagcc atgattcgac aatttgggct gccaacgttt        60
     ttcataactc tttccgctgc tgaaactnag tggaatgaac ttttanttat cctgtctctt       120
     ctattggata atagggcttt gagcgaagaa gaagcggcag ctnnttccag ctccgaaaag       180
     gctcggttaa tccgatccga tccagtgaat tgctctcgat acttcgatta gaggttgcga       240
     caattaatga aattgttcaa aaccgatatt tttggggaat ttttattgga gaatcgaatt       300
     ccaacacaga ggatctccgc attctcatgg catgtattgg cttgctggtg ctcctaagct       360
     cgaagacgcc gaaaatacca gcaagtaaaa aactttgtga ataggtttat tactacaaat       420
     ggagacgata ctgaactaca agaagtaatt cagtatcaac gctacaagca tggtgcttct       480
     tgcctaagag agttacgcgg acagcagttc catatcctcc tatgcccgaa acgcttatng       540
     ttgaagatca tagaacctag tttaaaaaaa ttaaggaagc tttaaggact atttcaaatg       600
     aagacgcagc tttatttaac aattttgata attttctgtc ccaccttgaa actaatttcg       660
     aagcctacaa gctagcctta cgttccagct taaaaaagcc acaaattttt cttcgcagac       720
     aattctccga ccgactgctc aatgcttata atagagatat tctaggctta cacagagcta       780
     atatggatat tcaatttatc ctagatgcgt acgcctgttg tagttatatc gttaactaca       840
     taaacaaatc aaacagaggc gtatcgcagt tgctccgtga agccatggca gaaataagcc       900
     atgggaatat ttccattaaa aggaaattac agcacctagg gaataagttt attaacgcta       960
     cagaaatatc ggcccaagaa gcagcttaca atattttggg tctgcatatg tcggaggcaa      1020
     gtgaaggtac tattttttta aacacttgcc atccagacaa acgagttaga ttggctcgct      1080
     caaatgaaga attagagcga cttggaagga atttgtttag cagatttcgc agcttggtac      1140
     ngatttgtca agcggaatgc acgatctgcc gctaatcata gggaagacta tgatgaagca      1200
     agtgatgtgg aggtagatga cgaagatgaa gttgctgagc aaagttatcc actgatggat      1260
     gggtctggtt gcgttaagaa acgtaggcat cccctgattc taaggtgggt tcgctttagt      1320
     attaactctt caccttccga ttatttccga gagcatttaa tgctcttcta tccttggcga      1380
     aatgaagaag ctgaacttct ttccaacgac attgaaaaca cattccgagt aaaccatgaa      1440
     gccattaaga caatgaaaag gaactatgat gtgtttgatg atatggagtt agaaagagtt      1500
     ctggaagatt tgcaagagga taggggagat aatgctcctg atgcggaaga acctgcctcc      1560
     caatttttag acgaagagtt tagagctttg gcagtaccaa atatagagcg gaacgtaaat      1620
     attcttcagg atgacaatgc gataaacaac cctgaagaag acggcgaact tcaattaatt      1680
     agactccccc cgttagtttc caatgatgac ctttgctcgc taactcggtc cctcaactac      1740
     aaacaaagac aatattatgc acatgtgatg cataatgttg tttgtaaaaa tattttttac      1800
     gaatatgttg gtggaggggc cggtgtagga aaaagcagac tgatttctac catctatcag      1860
     tctgtgactt ggcgagcaaa taagcttcct ggtgctacgg attcagcaaa ggttttatta      1920
     tgtgctccga ctggaaaagc tgctttcgga attggaggac tgactctaca ttcagtgttt      1980
     tctcttccaa ttaatcaggc ttcaggtccc ttaagacctt taagcaatga tagtttaaat      2040
     acaattcatt gcaagttgat tgatctccaa ctgattataa ttgatgaaat ttctatggtt      2100
     ggttctaaaa tgctttcatt ttcggatcaa cggcttcgtc aaattttccg aagccctgac      2160
     ttaagttttg gtggaaaatc aattatagtt tttggagatc taaagcagct ttccccagtt      2220
     ggagacagtt ggatattttc ggagaggaca attaatcctt atagcgtttt agcaggaaat      2280
     agcttatgga gcaactttaa gtattttgag ctcacagaaa taatgcgcca aagaggcgac      2340
     catgcatttg ctcaagccct aaatcattta tctgaggctt gcatgacaat tgcagatata      2400
     gagctcctta aacaaagagt tgtttcaccc agcgaagttc ctgatgatgc cattcattta      2460
     ttttcttcta acgaagaagt taacaattac aattccctaa aactagcgca aattgggacg      2520
     gaagaattgg tttccactgc tgttgataca gtgaaaactg cgaacatatc tacacgaaac      2580
     agagaaaaca cgttaagata tgctcaaaat atgaaaacct ctgaaacaca gggtttgcca      2640
     tatgttcttc atctcaaaac aactgctaaa tatatggtga ccgtcaatat agacacaagt      2700
     gacggacttg taaacggagc aactggtcag ctgatgctaa ttgaccattg cttagtgaat      2760
     ggctcaaatt tagtaacgcg actttggatt aaattttttg aacccacggt tggcgctatc      2820
     gccagatcaa aagttcggaa cagtcccgat cccgaatgga ctccaatagt aaaagcctct      2880
     cgagtttttc aatgtggaag atcggagcat gcttctgttg accgaaaaca atttccaatt      2940
     gttcctgctg aggctattac catccacaaa agccaaggag caacatatag caaagtcgcc      3000
     gtgcatctta aaagaggcat caagcgagct tcgttatatg ttggatgcag cagagccact      3060
     agcgcatcag gacttttcct tctaggcgac tttgttcctc caacaagatt tggagctcca      3120
     aatgtccaag acgaacttca aaagttaaga gaggaaaagt ttttgactac gcattatgag      3180
     tttgtggtta acagaaacga agacatctcc ctgtattacc ataacgttga gtctcttcga      3240
     agccatcgcg aagatatttt taacgaccct attatttgtt ctgcaaattt tctttgtttt      3300
     gtcgaaactt ggactcttcc cagcgaagac ttttcttcac aaggtttcga cataataaga      3360
     agaattgata gcaatcgatt gaatggtatt ggcaaaaatg gaattatgat ttatgccaag      3420
     cgaaatattg ccgaaaatgt agttttcttg tttgagacaa ataagtcttc gagctcaaga      3480
     actatatacc aatcaattgc cttcaaatat cttaatacat ccttcattgt tgtttatagg      3540
     aatccaacgt ttcctatagc acaatttcgt aatgaagtta tgtcggacgt agaaaggata      3600
     cgcagcttag aaaataatag cgaattggtt atattaggag attttaatat ttgcagatcc      3660
     acaaccactg atcgacttga ggaagcttta aatgaattta atctaattcc aatcaataat      3720
     tctgcaacta cgaaacattt gacgcaaatt gattggatat ttgctgaaaa tgagctgagg      3780
     aatgctgttg ctcttacata caaaacgagc tacagtcatc atgatggaat ttttcttaaa      3840
     tataggtatt aagatttgtt tattaattta tttatcaatt tattaactta tttatttatt      3900
     tgaattgtat atatttaagt aaaatagaaa tagattatta tattgtttaa agattgtgat      3960
     aaatttttta tttataaagt gcaatataga ttaagctatt ataatatttc cctctcgtgg      4020
     attgagacct tgtcgtggtg agggggctga gtatgtgagg attcataata aatatcacgg      4080
     aaaccagcat caatcctttg ttttaactag ttcataaaaa aaat                       4124
//
ID   Helitron-3_FoCa repbase;    DNA;    INV; 7350 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-7350
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2489-2489 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. Several bps of target can be
CC   included in the consensus.
XX
SQ   Sequence 7350 BP; 2334 A; 1427 C; 1527 G; 2062 T; 0 other;
     tttttctatt ttttccccat aagctcaaat gtgggggcat tgtgagacat ttggtgctat        60
     atgtggaaca tatagtatgt tgtccggcac tcttatggga aatgtcgatc gctcgtacaa       120
     aaaaacggtt tgacctacag ggatggaata acgttcattg gatacatctg gggaagcttt       180
     aaaatgactt ttttctaatt tatgctatct tgaaccgttt ttaagatatt caagaaaaac       240
     cgttttttcg gattcgaaat cttaaatgtt tcgctgaatg aattgggtgc atgatatact       300
     attgcatgct atagcaaata tgttcacaat gattttatct atgatattta cttgaaaatt       360
     ttttcgaaat ggagctttgt tatggcacca gattcgaatt ttcgaaaaat ttcgcgtttt       420
     cagcaaccaa tttctccact gagctacagc caagaggata cattttggtg acctgaactc       480
     aacgggttcg tataggggag ggtcccggct agtgccctca actaattgac tttttcgaaa       540
     taagccttag ttttcgagtt atggcgcgat ttctgaattt caaaccaaaa cagcaaaaac       600
     ttgatttaac caccgagtat actttagata taattaaaat atttttttag gttaataaat       660
     acgtatagaa tttataatcc atcaattata tgttatcaac tttcaaacta aaatattgat       720
     gaagatgcaa atacaaattt actacttata gaaaaaaata agttgtctgc gtaggcatat       780
     ggagactcgt ctcagtgtac ccctgttgtg tgggaactcg acgagcagat acttcagctc       840
     cattgttgct tcccgacatt tctgcttaaa atacaaaata aatacaatat ttgtagtact       900
     ttttaaatta caaattttta attaagttta cgagcaatgc cgtataaggc gaggaaacgg       960
     cgaaagttgg aacaaatgag gtgggcaaaa agatcaaata ttacagcaac cgtatctgag      1020
     gagaacgaaa tatcaaatat tgaaaataat cagggcgagg taaatcggat tgtcgatcca      1080
     accgaggaag gagcaattct cccgcagcct acgcccattc atgctagccc ccattgctca      1140
     gaagaaacac cacagcaaat actcttcagg atcaacatta atcaggctgc cgaatggcgg      1200
     tgccgaattt gtgaccgtac gtggtacaga aagggtattc ggtgagtatt ttgaagatgt      1260
     tgataaagta gatattttaa aaatcataat aataaaatta ttttcacaga tcactaattg      1320
     tgacaaaaat cattcacgac ctcctagctg ctgtcgataa caattatgat cagacggtga      1380
     aatcccagct cattccagag gttttggaaa tcattgactg ttgcaagcgt tgtcacgaaa      1440
     acttaaagag ggggagagtt cctgctgctg cattggtcaa caatatgttc gtcccaccat      1500
     ctccgaatat catcaagaat ctaacagaag tagagtcgag agtggttagt agagcgaaag      1560
     cgtttctgaa gattttcaag ttggggcgag gaaaaggaca atctgcatta cgtggacaag      1620
     tcatccattt cgcgcaaagt gtcgaagagg tccaggatca gctgagactt gggccaaata      1680
     ataattatgg gacagttata gtaagtgaat ctgtggaaaa ctttccccac tcgtcgacat      1740
     acacgattcg tcccgcaggt atagcatatt tacgtggttg atctatattc gagtattaat      1800
     tatttaatta tttaattatt tcctccagtg cttcgagagg cgctccagtg gctgctggtc      1860
     aacaacgatg gatactcaaa tgtcaccatt gagcagttca atttgaatgg aatccgtatc      1920
     caggatctaa tgattcaaga agaaagtgct actccaagtc cagtaataaa cattaggcag      1980
     cgtcaacatc gggtaaatac tggatacatc gccataacgg gaaagacgtg gatgtcgtcg      2040
     ttacagttaa gtttctgcca aacggcagcc gtattcgggg aatcagccgg aaagcaatgc      2100
     actgcaattt cggcggtcgc tacagtttat gcagcagtta agccgccgaa cgagtggaca      2160
     gtccaagacg gagacaggat tttgactgaa ggtgactttt atgacaatca atgtcgcaag      2220
     aagttggtag caggtatcag aattcaaata ttgtacctgt ctctaagttt aagtatgata      2280
     tatatgtacc atcccacagc tcgtgtaatc acggaagagc atcagcgtcc tgtcattcct      2340
     gatcatcttg ctgtggacga aattcttggc gaggtccgaa attgttatgg aaacattgtg      2400
     cgcatcgaac tcgttgaagg cgggacagtc atttatggag gattcgacaa gtttctgagg      2460
     gaggcccaaa cgatcacaac aaattcagta gctgatgctt tatcccaatt ccttcatggc      2520
     caatcaaatt acgggctcat tacggcaggc aagtttgtta gaagaaatct taattaaaat      2580
     gtattgaaat attttttaat caattctaaa ttcacacagg tgcttatacg atgggactga      2640
     ttcggacaga gcgttacatt ttctacttcg acagtcattc taggagtcag caaggccata      2700
     tatctttagc taagtccgcc aaagcagtaa tccttaggct cgatcgtaac cacccagaaa      2760
     gtattaatca tattagatct attgtcaaca aaaattgcgt gggaggtcct gaatccgcca      2820
     tcataaccat tactcccctc aaactcacaa taatcgacca aggacccgac ataacaccgc      2880
     ctccagcgat tccgggaccg tctgacctcc cagaagatct gccgccagaa actgtggttt      2940
     ttggtgaaga agctgcggaa gactgtttgc tacacccagt ggactacata gagccacagc      3000
     tggaaaaatt caatctcaat cgaactgcag ctccacccgt gagattaact tctgagaatc      3060
     acttagaaga aaaatgtttc atcacctgct tcccacatgg aaaatttgga ttggatgaaa      3120
     agagagatga acgatttcgc atcaccacgc atgcatactt tcagacaagg gtaatgtcgg      3180
     gagatcctcg gttccaccgc atagattatc tcttttatgc actttcaaga tctgaagagt      3240
     cgattatccg agcaaaaatt aatatctgtg ggaacatgaa ataccaggat tctgaaaatg      3300
     ataacgctcc tgcagctgaa aatttacatc tatacatgag cgcaattcgt ggctccagat      3360
     cttattggaa gaggtatacg ggggacataa tggcaatgat tatgaggctt ggtccgccaa      3420
     tattttttct aacggtttcc tacgacgaca tgggctcagc tgatgtgctc aatgcaatgt      3480
     ggaaggccgg tcatcccaaa gacgaccctc ctccggacaa tattcaagat atgccattcg      3540
     actttcgtcg ggagttatta aactcaaatc ctgtcgccgc cgcccgccat ttcaatctca      3600
     ggacaaatga attaataaaa ttactgaacc aggatcaaac gatatttgga aagccagtag      3660
     tggactatac attccgggta gagttccaag accgaggtag tccacacctt cattcactta      3720
     tatggattca ggatgcaccg aacctttcca cacctgaagg aataaacttt atcgaccgca      3780
     acgtgtcgtg ccgacttcta ggtagtggaa tggaggatat tgtacggcga tatcagtcgc      3840
     acaaagatac gaccacgtgc tttaagaaag gttccacgtg tcggtttggg tttccacgac      3900
     ctcttgcatc tgaaaccact ctggaagaaa ccaacaatgg tcatggagta atcctaaggc      3960
     gttgtcaagg ggaagagcgg gtgaacaact accatccgac actgctgaag attcttcgat      4020
     gcaacatgga tatacagatt gtaacaggcg ttgccgctgt cgccctttat atagcaaagt      4080
     atatcgggaa aaatgaacct gaaaccctcc gtgatgacat tcgacacacc cttcagactc      4140
     tccgtgaaag tcgacaacca atacgggtac aaatggagaa ggtatggatt tcgttactta      4200
     gttttccaaa aaattttaag aggtactatt catcattcat attttcatat aggtctctcg      4260
     gcttttatta agtcgcagga cagtaggatc ccaagaagct gcctatcgta tggcaaatct      4320
     tcctatgaga catacgtcac gtgcatttgt atacatcccg acctatctac ctggtgatcg      4380
     catcagattg ttgaagaaaa atgcatatct agaaagggat gaggtacaat ttgcaaggta      4440
     tgtacagtaa aattgcatga aaaaaatgta taaataaaac aggaaattta agttgcctat      4500
     tttaattcta gtaatataat tgacaaatat tgcaatcgtc ctgaagatct acgaaatata      4560
     tgtttattcg aattcgcctc caagtatcag cccgtacgaa attatcaaca ggtagatgat      4620
     gattttgatg aaggagagga acaagaacac caactactac atgccaatcg attgatgcca      4680
     cgatctttct accttaagga taggtctatg ggactctgga gagaaagagc aaagtacgcc      4740
     gtaatcaaga gcccaccatt tcatagtgac tccgacgcgg aaaactttat ctacagccat      4800
     ctactactgt acgttccatt cattgaggag aatttcacgg cggacgggga atctgttaca      4860
     gatgcatttg agaagaataa ggccaatatt aggacaactt tggacttccc tttaatacgt      4920
     cctgatatag agaaagatct tgaagcagta gctcttcatc tagctgatct taatcaggac      4980
     ccccaagaaa cgcttgcaat ccatgaggtc gaggagtatc aataccttcc tgacgtctat      5040
     gacggaagta atgtgcttcc agctcaagaa gaatatagga ttgtacttct gaatgaagcc      5100
     tgcttcatgg ctgagaagct aaaaatgaac caagaccaaa aattcatata cgacatgatt      5160
     gaaggacatt tatgcgatcc tagcagaggt caactacaac ttttcatttc tggagctggt      5220
     ggaacaggaa agtcgttcct aatttccttg atgacgaacc tcatctgtgc gaaggaagat      5280
     ggaccaggcc cagcaggtgt acttttggcc gccccaactg gagtggcagc tttaaatata      5340
     aatggacaaa cccttcatcg cactttccaa cttgctgtag aatctggttc tgttccacgt      5400
     tacgctcctc ttggcgcaat aatgctgcag agaatgcgag ataaatttcg ggatgttgag      5460
     tggatcatca tggatgaagt atcaatgata tcttatgagg ttagtatatt atcaataact      5520
     aaattaatac gtaattttag gaaatattat aagtcatctt taataagtta actaaaatat      5580
     ttttgtttag ttattccgtc aagtaagcca acgtttggga gaatgtttcg acaacacgct      5640
     gccatttgga gggaaaaatg ttattgtcgt gggagatcta ttccagttgg agcctgttaa      5700
     tgggcactgc atctatgatc agccacgaca gttaggagcg gaagaaaacc tttggaagaa      5760
     tttcgctttt aaagaactta cggtcaacat gcgacagggt caagatccac tcttacatat      5820
     ctgtaacaac ctacgagaag gaaacatcac cactactgat ctccatgagt tgcggatgcg      5880
     agagtttagt gaagatactt cgagcaccgc tatgaaagat aaattcaaag atgctattag      5940
     aatatttcct acaagaaatc aggcatctat ttacaaccga ctcaagacca ggacttttcg      6000
     tagtgaccct cacataaaag tctatactat caaagcgagg gatagtttct tttctggaac      6060
     caaagctgga tcccgtgctc cgttggcata tagccacaga gacagcaata aatgtggtgg      6120
     cttcgtaagt tccattgact tagcagttgg atcaagaatt atggtaatcc ggaattcgcc      6180
     gacaaaccgt tatttagtca atggctcaat gggaacggtc gtcgggttca agtgggaaga      6240
     acttgcaagg gaacaacatc atcacggcga tctcccttca agtgtattgg tgaaatttga      6300
     cgattggcgc attgctggga ctcgggaagg tgtctatgag ttaaaaccta cagatgtgac      6360
     atacacaggg aaagcaaagg aagaaattca aagatggatg ctacctattg tcctttgctg      6420
     ggcagtgaca gtgcacaagg tacagggaat caccgtagat aaagcagtga tctatttggg      6480
     agccgagatt tttgcccatg ggcaagccta cgttgcctta agtcgcgtca ggacactgga      6540
     tggagtcgct atattggaac aggacgacaa caaattaact gcgaaaccac ccgacaaact      6600
     tatagcggag atggctcggc tgcgcgcctt atagatatat atagagtatc aaaatattgt      6660
     catgatttgt aatattaaca atttgaatct cttgaattaa agttggactg ctcgttgcaa      6720
     ttaaaacgta ttttttttac ttatttgaat tatcatattt ttaatattaa ggtgaaaagc      6780
     atcaaataag tattgcggta aaaccgctga aaaatctatt ttttcaaaac taaagatact      6840
     tacaatattc tacaaaaagg agagaaaaag taacaaacaa ggcgtagaaa acatttacct      6900
     gtatataata tattagggaa aaaatagggg caatcaaaat aggtaaaata aagaataaaa      6960
     aacaataata tcggaaatgt ctcgtcctaa ttgacaacca tgtaatgttt aggaaataca      7020
     atgagaacaa atacgtggct aatgtgcaca gctacaactg aggaattcat gcattaaaaa      7080
     ccagtaataa aagtttataa tcctacagag ctattcatgt tcgtcttaac atatagttta      7140
     cgtaatttat atttttatta gcatatttaa gataataagg aatctttaga aatacccaaa      7200
     aattgctcct atttttttcc taatatatta tatacaggta aatgttttct acgccttgtt      7260
     tgttactttt tctctccttt ttgtagaata ttgtaagtat ctttagtttt gaaaaaatag      7320
     atttttcagc ggttttaccg caatacttat                                       7350
//
ID   Helitron-3_HMM repbase;    DNA;    INV; 4946 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4946
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2637-2637 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           2295..4898
FT                 /product="Helitron-3_HMM_1p"
FT                 /note="helicase."
FT                 /translation="MVRENEDNHILKCRRLFHQYAVDMYVKVETERLTFIR
FT                 LNQAKLRSEEYIHLRDAINADGNAQNVGRTTILPATYVGSPRHMHEYAQDA
FT                 MCYVRHYGTPDLFITFTCNPKWTEIQQELFTSQSPIDRHDITARVFKMKLK
FT                 SLMNFIVKHRVFGETRCWMYSVEWQKRGLPHAHILIWLVERIRPNDIDHVI
FT                 SAEIPDYNEDPLLHEVITKNMIHGPCGILNPISPCMVEGKCSKRYPRQLVA
FT                 ETITGNDGYPLYRRRSIDDNGKXAIVKVNRQDIEVDNRWVVPFSPLLCKXY
FT                 KAHINVEFCHSAKSIKYICKYVNKGSDMAVFGVAAENSNDEVTQYQMGRXV
FT                 SSXEGMWRIFSFPIHERHPTVFHLAVHLENGQRVYFTDANVLQRVDRPPST
FT                 TLTSFFEMCQNDDFARTLLYSEMPRYYTWNQSSKKFQRRKRGQPVTGYPQV
FT                 FSTDALGRLYAVHPSQDECFYLRLLLVNVRGPTSFQHLRXVNGVLCXTYRE
FT                 ACQHLGLLENDTHWDHTLEDXXIYSNPKQIRTLFXIILXTCFXSTPIDLWH
FT                 KYKDHMAEDILHQMRLRTSNADLQMNEEIHNEALILIEDMCLMLTNKVLIQ
FT                 IGMIAPNRPMHNSFDQELRREAQYDSEALREMVDRTVPLLNQQQKYACDTL
FT                 MKVVNDGTGGIYFLDAPGGTGKTFLLSLILATIRSQNGIALALASSGIAAT
FT                 LLEXGRTAHSALKLPLNLQIXETPTCNLSRNSAMAKVLQQTRLIIWDECTM
FT                 AHKKSLEALDRSMQDLRNNRNRFXGAMILLAGDFRQILPVVPRSTPADELN
FT                 ACLKSSILWKYIKILKLSINMRVELQEDQSGEVFSKQLLDISNGNIAVDTS
FT                 SGYITFPTNFCNFCE"
XX
SQ   Sequence 4946 BP; 1653 A; 869 C; 905 G; 1504 T; 15 other;
     cgcgtgaatg actggaccga tttcactaat tctttttttg ttgtatttgt tattattaga        60
     aggttcttac ggaaaaaaat attaagaaaa tctctcagaa atattgaaaa atgtacattt       120
     aatttagcat attttaaaaa acgcgagtaa caaatgtcaa tgtcattcac agccatagat       180
     tatattgatg aaagagcatc gtttgcttta ctgtcatcgt ttgtttggcc aacaacgttt       240
     gttttgatta ttgtttgcta attttttatt ctggttgcca tcttgaatac acgtttttga       300
     ggacagccag aagaattatc cactttaagt tatctctact tgatattggc gtatcgccat       360
     tcgtttataa ttgttaaatt atattacttg atattggcat agaatcctaa tgggaaagcc       420
     attgaataaa aagaagtgaa gtgaagtgtt tgttaatcac ggtaagttca cagcttcata       480
     ttgattttta gtaacttttg ctgattacac aataatacaa tttggtatac atggttatac       540
     agaaaatgta tgagagcttt tcattttcag ttggattttc gtttttaaca atgccaccaa       600
     ccagacgtac aagcttaggc cgcagaactc gaaatacggc aagtcaaaga aatataagag       660
     caaatcaaac tgatgagcaa cgcgaagcgc gaaatgaact tgaacggaat cgatatcaag       720
     atagaaattt tgtgtttaat ccccacagag ctgcattcag ttataatgtg gcaattgatt       780
     acagttcagc gaaaattgtt gctattggac aaatgagtat tgtgtgtcca cattgcaagg       840
     cattgaaatt caaaaatgaa gcccctggat tgtgttgcgc cagcggccaa gtcaaattga       900
     cgccattggt accgccacca gagccactac attcattggt atctggaatt ggtccagatt       960
     cttatcattt tttgactcat atccagcagt acaataattg ctttcaaatg acatcatttg      1020
     gggcaacaaa ggttattcga gacaatttta tgcctacttt caaagtaagt aattatttgt      1080
     ttatttattt taatttattt atttatttat tcataaggcc caccaacaat tgatacaatt      1140
     attatatgcc attaagaaaa acaaagtaaa ttattctaat tgctcaatta tttacagtgg      1200
     cacatgcaaa taaatttaac gataacaaca aacaacaact taaaaataat aaattacacg      1260
     tgctacacac aagttataca ttattaagat aaaaaacagt ttcatatatg cattaataaa      1320
     ttattcactt attctatttt gttatacaag tacgaaaaaa aaacaattaa tattaataat      1380
     ttaaggtaag agacactaaa taataaatat ttttaaatta aaattaaatt aatggcatta      1440
     taatggtaaa catttttttt tagttttact acctatggca aataagtttt ttaggtctac      1500
     tacctatagc tgtcatggaa ggctgttcaa tgtcgaggtt taaagtagtt ttaatttgaa      1560
     atgatgtaaa gtattgtggc agtattttgc gagccacatg gtggtaaaat ttgctatata      1620
     attacctgta tatatattta tattcttgca gattcagggt caaatatatc atcgaacagg      1680
     ttccttattg ccagtgcctg atcaagacta taaatttttg caaatatatt ttatgggcaa      1740
     ttcagcaaga gaagtcgatc agcgttgcgc acacaacaac tcagtgaaaa gatacattgt      1800
     ggaacaactt caaacatttt tccatcaaca caatgaataa gttgcattat tcacaactgc      1860
     attagaccgc atgccatctg ataatcacaa aattgtcatc agagccgata aggcgcctgc      1920
     aggacaacat gctggacgtt ttaatgtgcc aacaattgat gaagtggcta ttgtcgttgt      1980
     gggtgaaaat ttagaaaacc gagacattgt tttacatcgg cggaacgatc agcttcagcg      2040
     tgtgtctgaa acacatcgat catatgatgc cttacaatat cctatcttat tttggcaagg      2100
     tgaagacggc tatcattttt caatgaagat gataagtcca gttacaggta aattattaac      2160
     aatatgttta ctacattaaa atatatgttt actaacataa aatttatatt attatcataa      2220
     cacaagaaat tgtttacagg tgctgacacg aacaaaaaaa ttagttcaat gaattattat      2280
     tcatacagag actgatggtt cgggaaaatg aggacaatca catcttaaaa tgtcggcgtc      2340
     tatttcacca gtatgctgtg gatatgtatg tgaaagttga aactgaacga ttgacattta      2400
     tcaggttgaa ccaggcaaaa ctccgttccg aggaatacat tcatcttcgg gatgccatta      2460
     atgctgatgg aaatgcacag aatgttggca gaacaactat tctcccagca acatacgttg      2520
     gaagtccgcg tcatatgcat gaatatgctc aagatgctat gtgctatgta agacattatg      2580
     gcacaccmga tttgtttatc acattcacat gcaatccaaa gtggacagaa attcaacaag      2640
     aattatttac tagccaatca cccattgatc gccacgatat cactgcaagg gtgttcaaaa      2700
     tgaaattaaa atcactcatg aattttatcg ttaagcatcg cgtgttcggc gagacgcgct      2760
     gttggatgta ctcagttgag tggcaaaaac gcggattacc acatgcgcat atcctcattt      2820
     ggttggttga gaggataaga ccgaatgata ttgatcatgt gatatcagca gaaattcccg      2880
     attataatga agacccactg ttacatgagg ttattacaaa aaatatgata catggtccat      2940
     gtggaatatt aaatcccatt tctccgtgta tggttgaagg aaaatgttca aaacgctacc      3000
     caagacaatt agtagcagaa actattactg gaaatgatgg atatccactt tatcgccgcc      3060
     gatccattga tgacaatgga aagtmagcaa tagtcaaagt aaatcgacag gacattgaag      3120
     ttgataatcg ttgggttgtt ccgttttcgc cattactctg caagkcatat aaagcacaca      3180
     taaacgtcga attttgccat tccgcaaaat ccataaaata catttgcaag tatgtgaaca      3240
     aaggtagtga tatggctgtc ttcggagttg ctgccgaaaa ttcaaatgat gaagtcactc      3300
     aatatcaaat gggccgctwt gttagtagta asgaaggcat gtggcgtata ttttcgtttc      3360
     ctatacatga acgacaccct actgtttttc acttggccgt acatttggaa aatggtcaac      3420
     gggtgtattt tacagatgca aacgtattac aacgagttga caggccacca tcgacaacat      3480
     taaccagctt ctttgaaatg tgccagaatg atgattttgc cagaacgcta ctttattcag      3540
     aaatgccaag atattatacc tggaatcaat catcaaaaaa attccaacga cgaaaacgag      3600
     gacaaccagt tacaggttat ccacaagtat tttccaccga tgcactaggc cgtctttatg      3660
     cagtccatcc cagtcaagac gaatgtttct atttgcgttt actgttagtc aatgttcgtg      3720
     gtccaacatc attccaacat ctgcgaasag ttaatggtgt attgtgtkgc acatacagag      3780
     aagcctgtca acatctggga ttgttagaga atgacactca ttgggaccac actctcgaag      3840
     atkctstgat ttattcaaat cctaaacaaa tacgaacatt attttstata attttgwcta      3900
     catgcttcmc atcaacaccg attgatttat ggcataaata caaagatcat atggcggaag      3960
     atatattgca tcagatgcgt cttagaacat cgaatgcaga tttacaaatg aacgaagaaa      4020
     ttcacaatga agcattaatt ttaattgagg acatgtgctt gatgcttacc aacaaagtat      4080
     taatacaaat aggaatgata gcacccaatc gcccaatgca caactcattt gatcaagaat      4140
     tgagacgcga agcccaatac gattccgaag cattaagaga aatggttgat agaacagtac      4200
     cccttttgaa tcaacaacaa aaatatgcct gcgatacgct catgaaagta gtgaacgatg      4260
     gaactggcgg aatttatttt ttagatgctc ctggtggaac tgggaaaacg tttttgttat      4320
     cattgatttt ggccacgatt cgatcgcaaa atggaattgc actagcccta gcttcatcag      4380
     gtattgcagc tacgttgttg gaasgcggtc gaacagctca ttcagctctc aagttgccgt      4440
     tgaaccttca aataamtgaa actccaactt gcaacctttc gaggaattct gccatggcca      4500
     aagtgctgca gcaaaccaga ttgatcattt gggatgaatg cacgatggca cacaaaaaat      4560
     ctttagaggc attagatcgc tcaatgcaag atttacgaaa taacagaaac cggtttgstg      4620
     gtgcaatgat actattggca ggtgattttc gacaaatatt gccagttgtt ccacgctcaa      4680
     cgccagctga tgaactaaat gcatgtttga agtcgtccat tttatggaaa tacattaaaa      4740
     tacttaaatt gagtataaac atgagagtcg aattgcagga agaccagtct ggagaagtgt      4800
     tttccaaaca actgctcgat attagtaatg gtaatattgc tgttgataca tcatcgggat      4860
     acattacatt ccctaccaat ttttgtaact tttgtgaatg aaagaccgaa ctcatggaga      4920
     tggttttccc aaacatagct caaaat                                           4946
//
ID   Helitron-3_LMi repbase;    DNA;    INV; 6017 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6017
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2987-2987 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1696..1944,1821..3953,3635..4471,4270..5871)
FT                 /product="Helitron-3_LMi_1p"
FT                 /translation="MNTWGFVKNCAFKYDPTLDYSNHRLIKIDRMNKACRF
FT                 CGALKWKEETAGMCCSGGKVSVPTLEEPADPLNNYFLETPTSHSSSMEGGN
FT                 GGNVLLWGQGIRTYIRRAGGSFKQLFSGDTDESQQFLNRIRKYNACFHMTS
FT                 FGADRILAMPGFSPTFTVQGQVHHKIGSLLPPSNGEAKFLQIYFIGDDERE
FT                 TDRRCQIIHGVERATVQKIQKVLHDHNVLVHEFKTALENMPDDSCKXVIHA
FT                 DRVPSGQHARRYNAPTVAEVAAVVAGADHTAPRDIVLCKQDDSVTRIADTH
FT                 RYYDALQYPIMFWKGQEGYHFGIPQMNPATGQPNPNKKVTCKDFYAFHLMV
FT                 REHDFNLPLRCRVLLSQFLVDMYVKMESERLRFIALNQRKLRAENYVHLQD
FT                 AIANDANVNPNDLGQMVILPSSFVNSPRYLHEYTQDAFSYVRNYGRPDLFI
FT                 TFTCNPAWAEIREELMVGQKPTDRHDIVARLFKIKVQKLVALLTKGQVFGE
FT                 VQCFMYSIEWQKRGLPHVHLLLWLKQKLRPNQIDALISAELPDPNVDKQLY
FT                 DTVTKSLLHGPCGMLNPMSPCMKDRKCSKKYPRPLLKETQTSENGYPLYRR
FT                 RAPEDGGHTVTMKLRGMAQEVVLDNSWVVPYSPLLCKIFNAHINVEYCNSV
FT                 KAIKYICKYINKGSDQAIFIVQQQGYANIDPRDEVQMFRAGRYVSSNEAAW
FT                 RILGLPLHERHPTVTHLAVHLPNGERVYFTESNLRDRIAAPPTTTLTAFFR
FT                 LCQTDEFARTLLYTDVPKYYTWNTSQKEWKRRVQGTPVEGWQVSRSICQQQ
FT                 RSCMADIGLAASREASDSDTPGGAPSQWRARVLYGVQFARSNSGTAHYHPH
FT                 RIFPSVPDRRICQNIAVHRCAKILHMEHVTERMETTCAGHPGRRMASVKAS
FT                 DALGRIYTVHVTHFECYCVRLLLTRVRGPISFQALKTVDGQVKATFQEACE
FT                 AMGLLEDDGHWDATIEDAVLCRSSAKLRELFSIMLSTCGLSNPMALWNKYK
FT                 RAFLKTSRISTKGQHRPAMKYILTNLLSLLRIKFSRWWGNGCLISTCPPHN
FT                 DQESCPLICSGNSVTTKSVSEDIAHQYQGTAQASDEIYFNESLKLIEDKVF
FT                 SMVGKRLSDFDMPTPQRSGELSTDLLRELSYDMTDLEAQVAQTEPLLLPEQ
FT                 RHVFNTILSRVESGKGGLLFLDAPGGTGKTFLLNLLLAQLRKDRNVALAVA
FT                 SSGIAATLLSGGRTAHSVFKFPLNLASEETPTCSISKTSGRAALLQQCKLI
FT                 VWDECSMSHKRAIEALNRSLQDIRGNGMLMGGVVVLLAGDFRQTLPVMSEA
FT                 LRQTRSMRASNPRPVGTRRKFTAKTNMRVQLYNDQESGLFAQYLLDIGEGR
FT                 IATDAEGLIKFENHFCTVVSSEDNLINEVFPSLHDNLSNEEWLCERVILAP
FT                 KNESVRNINNKIIAQVPGEVTTYMSIDTVMTTDDATSYPVEFLNSLELSGV
FT                 PSHKLELKVGVPVLLMRNLDAPRLCNGTRLRITDLRRHIVQATIITGGAKG
FT                 ETVLIPRIPIIPTNLPFQFKRLQFPLKVAFSITINKSQGQTLKVAGIHLAT
FT                 PCFSHGQLYVGCSRVSRARNLYVYSENKKSRNVVYRDVLQ"
XX
SQ   Sequence 6017 BP; 1628 A; 1304 C; 1425 G; 1659 T; 1 other;
     ctatacatat tataaatgcg aaagtttgta tgtttgttac cgcatcacgc taaaactgca        60
     gcactgattt agatgaaatt tcatatagag atttcttatg tcttggatta ggacataggc       120
     tacttttcaa aatgtttatt acaagttatt tatttgaaat atatccatag aaatacgtaa       180
     cggttgtaag aagcttctaa tacaacagca gaggtgctat gtagtgtatg tcatgtttag       240
     ccgcgagggt taacgcgtca tgtcataaac ttccattatt ttgggcaatg gttcgtgtcc       300
     tgctatagtg attttttttc tttgttattg ttatcttttt tactttcgaa tatacaaaaa       360
     gattctggga tactgccaaa acggcttaac tgacatataa ttacatacac aagaaatctg       420
     aatgttggcg tttatgccgc actcattttc atttgttgta acaaatgaag gaagtatgta       480
     tataaattga agactttaaa taaaatatgc tctaagtacc atggcaagaa aaaacattga       540
     cttttgtgta aatgggatct agataccaag ccctattttg tgtacaaagc gcgaactgcc       600
     acgtataaat agcgtacgta aactgcaacg aaagtagtag caaatgcact caacagatgg       660
     caggcagtat aacactcatg aaaatatttc tcaggacgta taatgtgtat tcaattgtga       720
     tattatccag gttcttaaat attgttttct ccttggtttt cgatgacgtg tattggactg       780
     tcaccttcaa ctatagatgt tcgaacattg tgatgttatc gtaattcttt aaaattgtat       840
     tctctttgga tttcaatgaa taatagtttc tttggtgatt tcgattgttt atagcattcg       900
     aacgtttgct tttagtgcat tgacgtgact ttgctggtta gatttcactg attcaatctt       960
     tctctggtga tttcgttggt ttgtaagact tggttggttt gtttccctgt tatatttatt      1020
     gtttctttca ttcgtttagt tcgtatttat aggatcagga tagtttcttt attcgttaca      1080
     tttgttgttt cttttgttgg ttcgctttgc atttgtagga tctcaacagt tcgtttctcc      1140
     gttagatttc gttgtttatt tcgttacttt cttgttattg tttctttctt cgtttctccg      1200
     agttaggttc gttgtttctt tcgttggttc gcttagcttt tgtaggatct cggcagtctt      1260
     ttctccgtta ggtttgctgt ttatttcgtt cctttacttg gcatttgttt tcgattactg      1320
     tattgttgtt attgtagtta cttactagat tttgttgttt ggtcggatat tttacgacac      1380
     cagttcctca ctttaggtat tactgtttaa gtttctaatg cctggcaaac gcaagtcaaa      1440
     tctatctcgg agctctaaac gcgctcgagc tatgaagata gctagacagc aacaatcgcc      1500
     tacagatgct gaagagcgga aaattgggca ggcggagcgg caggcagtgt tcgagcggct      1560
     gaaaccgctg cgcaagctga tgatcggcgt cagcagaacg ctgaacgcac tgcatctctg      1620
     cgtgtttctg agacagccga agaagcagac gcacgccgac atgctgttgc acaacgacaa      1680
     gttcaacgtc ggctcatgaa tacctggggt ttcgtaaaaa attgtgcttt caagtatgat      1740
     ccaactttgg attacagtaa ccacagactc atcaaaattg accgtatgaa caaggcatgc      1800
     agattttgtg gggcacttaa atggaaggag gaaacggcgg gaatgtgttg ctctgggggc      1860
     aaggtatccg tacctacatt agaagagccg gcggatcctt taaacaatta ttttctggag      1920
     acaccgacga gtcacagcag ttcctaaatc gtataaggaa atataatgca tgttttcaca      1980
     tgacctcctt tggggcagat agaattctag ccatgcctgg gttttcaccg accttcacgg      2040
     tgcagggaca agtgcaccat aaaatcgggt cccttttacc tccgtccaat ggtgaagcta      2100
     aatttttgca aatttacttt ataggggacg acgagagaga gactgacaga cggtgtcaaa      2160
     ttattcatgg agttgaacgc gcgactgtac agaaaattca gaaagttctg catgatcaca      2220
     acgtattggt gcacgagttt aaaacagctc tggagaacat gcccgacgat agctgcaags      2280
     tggtgattca tgcagatcgt gtgccaagcg ggcagcacgc acggcgctac aacgcaccga      2340
     ccgtggccga ggtcgcggct gtggtcgcag gtgctgacca taccgccccc agggacattg      2400
     tcctgtgcaa gcaagacgac tctgtcacca ggatcgcgga cacgcaccgc tactatgatg      2460
     ctctacagta tcccattatg ttttggaaag ggcaagaagg atatcacttc ggtattcctc      2520
     aaatgaatcc tgcgactggg caaccgaacc caaacaaaaa agttacatgt aaggatttct      2580
     atgcatttca cctgatggtc cgcgaacacg acttcaactt gccgttgcgg tgtagggtac      2640
     ttttgtcgca atttttggta gacatgtacg tgaagatgga gagtgagcgt ctaaggttca      2700
     tagcgctaaa ccaaagaaag ctgcgtgcag agaattacgt ccatctccaa gacgcaattg      2760
     cgaacgatgc caatgtaaat ccgaacgact taggtcagat ggtcattctc ccgtcatcat      2820
     ttgtcaatag tccgaggtat cttcacgaat acactcagga cgcgttctcc tatgtccgga      2880
     actatggtcg gccggactta tttatcacct ttacgtgcaa ccccgcctgg gccgagatca      2940
     gggaagaact gatggtcggg cagaaaccga cagatcgcca tgacattgta gcgcgccttt      3000
     ttaagattaa agtacaaaag ctggtggccc tccttacgaa agggcaagtt tttggtgaag      3060
     tgcagtgctt catgtattcc attgagtggc aaaagcgcgg cttgccgcat gtgcacttgc      3120
     tgctatggtt aaaacagaaa ttgcggccga accaaatcga tgcactgata tcagcagagc      3180
     tacctgaccc caatgtggac aagcagctat atgacacggt cactaagagc ctactccacg      3240
     gtccttgcgg aatgctgaac cctatgtctc cgtgcatgaa ggacagaaaa tgcagcaaaa      3300
     agtatcctcg accactgtta aaagagaccc aaacgagcga gaatggatat ccattgtaca      3360
     gacgtagagc gcccgaggat gggggacata cagtcacaat gaaactgaga ggtatggcac      3420
     aagaagtcgt actggacaac agctgggtcg ttccatactc accactcctt tgcaaaatat      3480
     ttaatgccca cattaatgtg gagtactgta actcggttaa ggcaattaaa tacatttgca      3540
     aatacataaa caaaggcagt gaccaggcga tatttattgt gcaacagcag ggctatgcta      3600
     atattgatcc aagagacgaa gtgcagatgt ttagagccgg tcgatatgtc agcagcaacg      3660
     aagctgcatg gcggatattg ggcttgccgc ttcacgagag gcatccgaca gtgacacacc      3720
     tggcggtgca ccttcccaat ggcgagcgcg tgtactttac ggagtccaat ttgcgcgatc      3780
     gaatagcggc accgcccact accaccctca ccgcattttt ccgtctgtgc cagacagacg      3840
     aatttgccag aacattgctg tacaccgatg tgccaaaata ttacacatgg aacacgtcac      3900
     agaaagaatg gaaacgacgt gtgcagggca ccccggtcga aggatggcaa gtgtgaaggc      3960
     gtcagatgcc ctgggcagaa tttacacagt gcatgtaaca cattttgagt gttattgtgt      4020
     acgtttgctt ctgacccgtg tccgtggccc catcagtttt caggccctga aaacagtcga      4080
     cggacaagta aaagccacgt tccaggaagc atgtgaggcg atgggacttt tggaagatga      4140
     tggccattgg gacgctacaa tagaggacgc tgtattgtgc cggtcatcag ccaagctgag      4200
     agagctcttt tctataatgc tgagcacctg tggactctcg aaccctatgg cactttggaa      4260
     taaatataaa agagcgtttc tgaagacatc gcgcatcagt accaagggac agcacaggcc      4320
     agcgatgaaa tatattttaa cgaatctctt aagcttattg aggataaagt tttctcgatg      4380
     gtggggaaac ggctgtctga tttcgacatg cccaccccac aacgatcagg agagttgtcc      4440
     actgatttgc tcagggaact cagttacgac atgacagact tggaggccca agttgcccaa      4500
     actgagcccc tgctattacc agagcaaagg catgttttca atacaatttt gagtcgcgtg      4560
     gagagcggaa aagggggtct ccttttcttg gacgcacctg ggggcactgg caagacattc      4620
     ctgttgaatt tgctgctggc ccagttgcgc aaggacagga atgtcgcgct agctgttgcg      4680
     tcctctggta tagccgcgac cttgctcagc ggaggaagaa ctgcccactc ggtattcaag      4740
     tttcctttga accttgcgag tgaggaaacg cccacttgca gtataagcaa gaccagtggt      4800
     cgcgccgctc tgttgcagca gtgcaaatta attgtgtggg atgaatgctc gatgtcacac      4860
     aagcgtgcga tcgaggcgct caaccgaagc ttgcaagaca tccgtggtaa cggaatgttg      4920
     atgggtggag tcgttgtctt gctcgcaggc gacttccgac agacgctgcc ggtcatgagc      4980
     gaggcactgc ggcagacgag atcaatgcgt gcctcaaatc ctcgccctgt gggcacacgt      5040
     agaaagttta cagctaaaac taatatgagg gtccaactct acaacgatca agaatctggg      5100
     ctctttgctc aatacctcct cgacatcggt gagggccgca tcgcaacgga tgcggaaggc      5160
     ctaataaaat ttgaaaacca cttctgcact gttgtaagct cggaagataa cctaattaat      5220
     gaggtttttc caagcttaca tgacaacttg agcaatgagg aatggttatg tgaaagagtt      5280
     atcttggcgc ctaagaatga atcggtgaga aatatcaata acaaaattat tgctcaagta      5340
     cctggtgagg tgactaccta catgtcaatc gatacagtga tgacaacaga tgacgcaact      5400
     tcataccctg tagagttcct aaactcatta gagctgtcag gggtgccatc ccacaagttg      5460
     gagctgaagg tgggtgtgcc tgttttattg atgcgtaact tggatgcacc acgattatgc      5520
     aatggcacca ggttacgcat cacggacctg agaaggcata tcgtgcaggc caccatcatc      5580
     accggtggag ccaagggaga gactgtatta ataccacgaa ttcccatcat cccaacaaac      5640
     ttgccattcc agtttaaacg cttgcagttc ccattgaaag tggccttctc gatcactata      5700
     aacaagagtc aaggacaaac attaaaagtg gcaggtattc atctggccac cccatgtttc      5760
     tcgcacggac agctctacgt aggctgctcc cgtgtatcga gagctagaaa tctctacgta      5820
     tactcggaga acaagaagtc tcgaaacgtc gtttacaggg acgtattgca atagattttt      5880
     ggctctccat ccattccaag acaattatat gttccgtgct aacaatgtcg caaacagtca      5940
     tgcagttatt tatgcccttt cttggcactt taatgtctga ctattgaacc gcgggtaaca      6000
     ccgcgggagc agctagt                                                     6017
//
ID   Helitron-3_NVi repbase;    DNA;    INV; 5522 BP.
XX
AC   .
XX
DT   14-APR-2009 (Rel. 14.04, Created)
DT   14-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5522
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 764-764 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus may be incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..776,780..1013,1017..3104,3080..3733)
FT                 /product="Helitron-3_NVi_1p"
FT                 /translation="NTSYPQELKDLLFQNNSKSINFKKNIRGYNNLFAFAS
FT                 FGSKLVYFNNPGPQVLKICGQVYHNSYSLHPNENEDPKYGQLYIIDNEIAN
FT                 KYRANNYKIDKPDSNILEFLCTFLSLNNPYAKAYKMMYEIENEENINAHNN
FT                 NITPPEIVMSLTRDNHTKNKSYFATCNEVAVVYIGNYGEPPFDRDIRIYPK
FT                 TEKPQQINILSKHLDPMTYPLIFPFGHPGWQPYIKCTKKEYKNNNISTLQF
FT                 YSYRLSIRGDFNPYLNLNLSQQFIVVVWTRIEGCRLYYLRTHQAQLRTEMY
FT                 KGLMDYVSNRANIDNSRIGKMVILPSSYIGSPKSIQQNYLDSMTLQVDGKP
FT                 DIFITMTCNPNWKEIQENLLPYESTIDRPDLISRVFHEKVKILKTELLKNN
FT                 IFGKVKGYVYVIEFQKRGLPHIHMLLWLHTNDKFRDTDQIDSIISAEIPNE
FT                 NEYPRLYNIVKNNMIHGPCGSQNKNCVCMNEDKTRCTKNFPKPYVNQTHYN
FT                 PDGYPSYRRRKNNNKITFSKHRIADNSFVVPYNPYLLLLLECHINVEICST
FT                 IKAIKYLFKYFHKGPDTALVKFANEHNPGNEDNVNENNDTYKYDEISQHLS
FT                 TRYVCAPEAIYRIWEFLLHEQSYVIKRLAVHEEDEQYVYYQEGCEHEMIDK
FT                 NVHTTLTSWFKLNKEDKNATQYLYHEIPYHYVFDKKTKKWNKRKKFIKPLI
FT                 SRMYFVNPNKREAFFLRLLLLHVRGAKSFADIRTVDGIIYDKYGNACISRG
FT                 IISTDEEWNKCLAEAAVFKFPKSMCELFAYILVFQRPINSLELYDKYKCHF
FT                 MDPKLPKIQAEQRALKNIESILLLHGLRLNDFHISSIENNYDDEEYNNELQ
FT                 VCKDGENLETLINSLSTDQKKIYDLIINATINSIGNKYYFIDGLGGSGKSY
FT                 LHNVMIKYLISMNVPFITMAWTGIAANLLINGKTVHSIFKLPLNINEQTTC
FT                 NICPNSKYGXHIKNVKIIIWDEISMVSKHAFEAIDKCFRDICKNDLPFAGK
FT                 VIVTSGDFRQTLPIVRHRNXTKIKMIKQNKNQNDLMTEIFGHKIDPNDSTL
FT                 KNKVILSPLNSNVLKINESIVERIDGDHYIYYSDDRIQSDADDKLTNTIPT
FT                 EFLNSLTPNGLPPHKLILKKGAIISCLRNLDIDGGLCNGTRLIIKDMKQYV
FT                 LTAEIITGKYSGKQVLLPRIDLAPSLDEIPFGMVRRQFPIRLSFAMTVNKS
FT                 QGQSFDKVGLYLSTPVFSHGQLYVALSRTTSKEKLKIFK*"
XX
SQ   Sequence 5522 BP; 2159 A; 788 C; 752 G; 1795 T; 28 other;
     ataacacatc atatcctcaa gaattgaagg atctattatt tcaaaataat tcaaaaagta        60
     ttaattttaa gaaaaatata agaggttaca ataatttatt tgcatttgcc agttttgggt       120
     ctaaattagt atactttaac aatccggggc cacaagtatt aaagatatgt ggacaggtat       180
     atcataattc atattcatta catccgaatg aaaacgaaga cccgaaatat ggccaattgt       240
     atattattga caatgaaatt gcaaataaat atagagcaaa taactataaa attgataaac       300
     ccgattcaaa catattagaa tttttatgta cttttttgtc tttaaacaat ccttatgcaa       360
     aagcatataa aatgatgtat gaaatagaaa atgaagaaaa tattaatgct cataataata       420
     atataacacc tcctgaaata gtaatgtcat taacacgtga taatcataca aagaataaat       480
     catatttcgc aacatgtaat gaagttgctg ttgtatatat aggaaattat ggcgaacctc       540
     cgtttgaccg tgatatacgt atttatccaa aaactgaaaa accacaacaa ataaatattc       600
     tcagtaaaca tcttgaccca atgacatatc ctttgatatt tccttttggt catccaggat       660
     ggcaacctta tataaaatgt acaaaaaaag aatataaaaa taataatata tctacactac       720
     agttttattc atatagatta agcatacgtg gtgatttcaa tccttatttg aatttgtaaa       780
     atttatcaca acaattcatt gttgttgttt ggacaaggat cgaaggatgt cgattatatt       840
     acttacgtac tcaccaagca caattaagaa ctgaaatgta taaaggatta atggattacg       900
     tttccaatcg ggcaaatatt gataattctc gaattggaaa aatggtaata ttaccatcat       960
     cttatatagg tagtcctaaa tcaatacaac aaaattattt agattcaatg acttaactac      1020
     aagtcgacgg aaaaccagat atttttataa caatgacatg taatccaaat tggaaggaaa      1080
     ttcaagagaa tttattaccg tatgaaagca caatagatcg tcctgattta atctcaagag      1140
     tcttccatga aaaagttaaa attttaaaaa ccgaactact aaaaaataat atttttggta      1200
     aagttaaagg ttatgtttac gtaatagaat ttcaaaaaag gggattacca catattcata      1260
     tgttattatg gttgcatacc aatgataaat ttcgagatac tgatcaaatt gattctatca      1320
     taagtgctga aataccaaat gaaaatgaat atccaagatt atacaatata gtaaaaaata      1380
     atatgataca cggtccctgt ggatcacaaa ataaaaattg tgtttgtatg aatgaagata      1440
     aaacacgttg tactaaaaat tttcctaaac cttatgtcaa tcaaacccac tataatcctg      1500
     atggttaccc ttcttaccga cgaagaaaaa ataataataa aattacgttt tcaaaacata      1560
     ggattgcaga taatagtttt gtcgtaccgt ataatccata tttattatta cttttagaat      1620
     gtcatattaa tgtagaaata tgtagtacga ttaaagctat aaaatatttg tttaaatatt      1680
     ttcataaagg tcctgataca gctcttgtga aatttgcaaa tgaacataat ccaggtaatg      1740
     aagacaatgt aaacgaaaat aacgatacat ataaatatga tgaaatatca caacatctct      1800
     ccaccagata tgtatgtgca cctgaagcta tatatcgcat atgggaattt ttactacatg      1860
     agcaatctta tgtaattaaa agattagctg ttcatgaaga agatgaacaa tatgtttatt      1920
     atcaagaagg atgtgaacac gaaatgattg ataaaaatgt ccatactaca ttgacatctt      1980
     ggtttaaatt aaataaagaa gataaaaatg caacgcaata tttatatcac gaaattccgt      2040
     accattatgt ttttgataaa aaaacaaaaa aatggaataa aagaaaaaaa tttataaaac      2100
     ctctcattag tagaatgtat tttgtaaatc caaataagcg tgaagcattt ttcctacgac      2160
     ttttattatt acatgtacgt ggtgcaaaat catttgcgga tatacgtact gtagatggaa      2220
     ttatttatga taaatatgga aatgcttgta tatcaagagg tattattagt actgatgaag      2280
     aatggaataa atgtttggca gaagctgcag tattcaagtt tccaaaatcc atgtgtgaat      2340
     tatttgcata cattcttgta tttcaaagac ctattaattc gttagaatta tacgataaat      2400
     ataaatgtca ctttatggac ccgaaattac caaaaattca agcagaacaa agagctttga      2460
     aaaacataga aagtatttta ttattacatg ggttgagatt aaatgatttc catatatcta      2520
     gtattgaaaa taattacgat gatgaagaat ataataacga attacaagta tgtaaagatg      2580
     gtgaaaattt agaaacatta attaattctt tgtctaccga tcaaaaaaaa atttatgatc      2640
     tgatcattaa tgctacaatt aacagtatag gaaataaata ttattttatc gatggtctcg      2700
     gtggaagtgg taaaagttat ttacataacg tgatgattaa atatttaatt tcaatgaatg      2760
     ttccgttcat tacaatggcc tggactggta ttgctgctaa tttattaatt aatggaaaaa      2820
     ctgtccatag tattttcaaa ttaccattaa atattaatga acaaacaacg tgtaatattt      2880
     gtcctaattc aaaatatggt raacatatta aaaatgtaaa aattataatt tgggatgaaa      2940
     tatcaatggt ttcaaaacat gcttttgaag caattgataa atgttttcgt gatatatgta      3000
     aaaatgacct tccttttgca gggaaagtta ttgtaacatc tggtgacttt agacaaaccc      3060
     tgcctatagt acggcataga aacaraacaa aaatcaaaat gatttaatga cagaaatttt      3120
     tggacataaa attgatccta atgattcgac attaaaaaat aaagtgatat tgtcaccgtt      3180
     aaattctaat gtactaaaaa taaatgaaag tatagttgaa agaatagatg gagaccacta      3240
     tatatactat agtgatgatc gaatccaaag tgacgcagat gacaaattga caaacacgat      3300
     acctacagaa tttttgaatt cattaacacc taatggattg ccaccacata aattaatatt      3360
     aaaaaaaggt gcaataatta gttgcttaag aaatttagac attgatggtg gtctttgtaa      3420
     tggtacaaga ttgataatta aagatatgaa acaatatgtt cttacagcag aaattattac      3480
     tggaaaatat tccggtaaac aagtattatt gcctcgtatc gatttagctc catcactaga      3540
     tgaaatacca tttggtatgg ttagaaggca atttccaata agacttagct ttgctatgac      3600
     agtaaataaa tctcaaggcc aatcgtttga caaagttggt ttatatttat ccactccagt      3660
     atttagtcac ggtcagttat atgttgcatt atcaagaaca acatcaaaag agaaattaaa      3720
     aatttttaaa tgatgaatct gcatacaaaa ataataaaaa tattacaaat aacgaatgta      3780
     aaaaacgaaa attaaacgac gaaatgaaaa tttacacaaa aaacatagtc tattctgaaa      3840
     tattcagaaa ttaattatat taattataaa acattactaa aatatgaagt atcttttgat      3900
     tgattgagta atcgctacta atacaacaat actaaagtat aaattatata ttgatttgct      3960
     gagaactctt cactattagt acattactga aatctgcgtc atgtctcmay taattattat      4020
     ctccagtaca ttactcaaat ttaaattatt ttttgattgg tcgaataatc gccactaatt      4080
     atacattacc aaaatttaaa taatatattg attggctgag ttatctccac taattgtaca      4140
     ttactaaaat ataaatttst attaawtatc grtkttrtgy ctaattatac taaattatat      4200
     twaagtttgc caaagtntgc catagttttc cataatattt caaattrtty aaattcagaa      4260
     atttagtaat ctttrgcata ccttggtata ctttggcaca ctctkataca cttnattaca      4320
     tattgacaca catgggtttt tcataaattg argacttata aaattaaatc taaatatcat      4380
     atgtcatatt gataattgta aataaaatgt gaattyaaca taattatatt aaaattagaa      4440
     atgtaaaata ttggcaaata atcgccacag aaactatatt caaaatccaa atgttarata      4500
     tacttaataa tatattgtat aartattaga taagtaatca ttaagtttat tttgtagcga      4560
     tatattaaca ctattataca catctctaaa taatttgcaa tgcaggcttt attattaaaa      4620
     tgttacattt aataattaat gayagtctcc accctgtgaa acgcagagag caaatttaca      4680
     actaatatta atataaataa tcatttacaa tagtatcatt tccaggcttt tttacaaaaa      4740
     caggcatgaa acaagatcat atctgcacaa atgattattc gcagcatccc ttttatccgg      4800
     accaaatctg cagattacgt cttgtgatat gcgtgaatac atagagcagt cgtcatttca      4860
     cattcacaaa cagatatctt taaaaaatca gatcatatct gcacaratga ttattcgcag      4920
     catccctttt atccggacma aatctgcaga ttacgtctag tgatatgcgt aaatacatag      4980
     agcagtcgtc atttctcatt cacaaacaga tatctttaaa aaaccagatc atatctgcac      5040
     agatgattat tcgcagcatc tcttttatcc ggacaaaatc tgcagattac gtcttgtgat      5100
     atgcgtgaat acatagagca gtcgtcattt ctcattcaca aacrgatatc tttaaaaaac      5160
     cagatcatat ctgcacagat gattattcgc agcatccctt tcatctggac caaatctgca      5220
     gattacgtct tgtgatatgc rtgatagagc agtygtcatt tcacattcac aaacagatat      5280
     ctttaaaaaa ccagatcgta tctgcacaga tgattattcg cagcatccct ttcatctrga      5340
     ccgaatctca agatcactac taatgatata tgtaaaacat acatgtatct atgtggcgca      5400
     tatgatttaa aaaataattc agattataaa tacaaataaa catatttgcc atatttctct      5460
     aaaaagatta tcatttacag catccgacac atctggacca atcttactgt gtttttgata      5520
     ta                                                                     5522
//
ID   Helitron-3_RPr repbase;    DNA;    INV; 3686 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3686
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3240-3240 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           505..3168
FT                 /product="Helitron-3_RPr_1p"
FT                 /translation="MIHGPCGAFNMTSPCMENGKCKKNFPKPHTNDTITDI
FT                 DGYPMYRRRSTENGGHTFTMRLPNFPNQVEFDNQWVVPYSPLLSKTYKAHI
FT                 NVELCSSVKSIKYICKYVNKGSDLAIFEVQNINKNDEIARYQMGRYISSNE
FT                 AIWHILSFPIHERDPAVQHLAIHLENGQRVYFTEENVLQRAFEAPKTTLTE
FT                 FFTLCQKPDVFGQFAKTLVFGDVPRYFTWNKSSKKWEPRKQGKPHPSITGI
FT                 FKAKTLGRLYTVHPKQRECFYLRLLLVNVPGPTSFEFLRTVNGRVFNTYQD
FT                 ACRELQLLEDDNHWDLTLADAALTSTPNNIRQLFAIILTTCYPSQAQTLWE
FT                 KYKNYMTEDILHRIRQTNQCQNIDYTPEMYNEALVLIEDLCVLISNLPLNH
FT                 YGMPSPNRPATDLVNTDLQRENQYDHGSLATIIMNSEPLLTAEQKIIYDRI
FT                 MLAVAAEQGGFFFLDAPGGTGKTFLISLILAKIRSQQKIALAVASSGIAAT
FT                 LLDGGRTAHSTFKLPLDVHNKPDAMCNIKKNSGIAAVLRKSSIIIWDECTM
FT                 AHKYSLEALNRTMQDLNSNNKLFGGAILLLSGDFRQTLPVIPRSTFADEIN
FT                 ACLKQSFLWRSVETLRLTINMRVQLQNDPSAQIFSEQLLDIGNGKIELQPN
FT                 TQCIKLPDNFCTVVQDKNELIQSIFPDIQNNYLNHEWLSQRAILAAKNVDV
FT                 DEINFQIQQLLPGDLMSFKSIDTVVDENESVNFPIEFLNSLDIPGMPPHNL
FT                 RLKIGSPIILLRNLNPPQLCNGTRLVIKKITGNILEATILAGKFKGKVVLL
FT                 PRIPMIPSDSTIPFKRLQFPIRLAFAMSINKSQGQTMSICGLDLENPCFSH
FT                 GQLYVACSRVGKPSNLFVLAKDRLTKNIVHRLVLN"
XX
SQ   Sequence 3686 BP; 1205 A; 688 C; 663 G; 1130 T; 0 other;
     tcttaatata tataaatctc gtgtcacaat gtttgtcctc aatggactcc taaaccactt        60
     aaccgattat aataaaattc gcacaccatg tgcagttcga tccaacttga gagataggat       120
     agtttaaatc tcaaattata gtcgcaattt taatttattg ctaattattt gtctgttatt       180
     atttgacagt cacaattatc tgttaactcc aaatgattct aacagatgtc gatacctttc       240
     gactgggttg agtaagtaat caatagatgg cgctgctatg gtaaatctac gaacgtgtca       300
     tataagctac attaatattc aatttttggt atcacacgtt gttggctgta tacgatagag       360
     tggcaaaagc gaggtttgcc tcatgcccac attttggttt ggcttaaaga tagaatccgt       420
     cctgaagaaa tcgatcaaat aatttcagcc gaaatttcag acccattaat tgatcaagaa       480
     ttatttgata ttgtcaccaa acacatgatc catgggccat gcggtgcttt caacatgacg       540
     tcaccgtgca tggaaaatgg aaaatgtaaa aaaaacttcc caaagccgca tacgaatgac       600
     acgatcacgg atattgatgg ttatccaatg tatcgccgca gaagtactga gaatggtggc       660
     cacacattta caatgcgact gccgaacttt ccaaatcaag ttgagtttga taatcagtgg       720
     gtggtaccat actcaccact actttcaaaa acttacaaag ctcatatcaa tgttgagctt       780
     tgcagttctg ttaaatcaat taagtatatt tgtaaatatg taaacaaagg cagtgatttg       840
     gccatatttg aagtacaaaa cataaataaa aatgacgaaa tagcacgata ccaaatgggc       900
     agatacatta gcagcaatga agctatttgg catattctca gctttcccat ccacgaaaga       960
     gatcctgctg tccaacatct ggcaatacat cttgaaaacg gtcaacgtgt atacttcact      1020
     gaagaaaatg ttctccaaag agcgttcgaa gctccgaaaa cgactctaac tgaatttttt      1080
     acattgtgtc aaaaacctga tgtttttggc caattcgcga agacattggt gtttggtgat      1140
     gttccacgtt atttcacatg gaacaaatcc agtaaaaaat gggagccacg gaaacaagga      1200
     aaaccacatc cttccattac aggcatattc aaagctaaga cattggggag actttacacg      1260
     gtacatccaa agcaacgtga gtgcttctat ttacgtttgt tattggtgaa tgttcccgga      1320
     ccaacgtctt ttgaattttt acgaacagtt aatggtcgag tattcaatac ataccaggat      1380
     gcatgtcgtg aactgcaatt gctagaagac gataaccatt gggacttaac gcttgctgat      1440
     gctgcgttga catcaacacc gaataacatt cgtcagttgt ttgcaattat tttgacgaca      1500
     tgttatccct cgcaagcaca aactttgtgg gaaaaatata aaaattatat gacagaagac      1560
     atcttgcacc gaattagaca aacaaatcaa tgccaaaaca tagattatac accagagatg      1620
     tacaatgaag cattggtctt gatcgaggat ttatgtgttc ttatttcaaa tttaccactt      1680
     aatcattatg gtatgccatc acctaatcgt ccagccaccg acttagtcaa taccgattta      1740
     caacgagaaa accaatatga ccatggaagt ttagcaacaa ttatcatgaa cagtgaacca      1800
     ttactgacag cagaacaaaa aattatttat gatcggatta tgctggctgt tgctgctgaa      1860
     caaggcggtt tttttttctt ggatgcaccc ggtggaaccg gtaagacatt tttaatatcg      1920
     ttgattcttg ccaaaatacg gtcgcaacaa aaaatcgcat tagcagtagc atcgtcaggc      1980
     attgcggcta ctttactgga tggtgggcga acagcacatt caacattcaa gctgccattg      2040
     gacgttcata ataaaccaga tgcaatgtgt aacatcaaaa agaatagtgg aatagctgca      2100
     gtgttgcgga agagttctat aataatttgg gatgagtgca caatggcaca caaatattca      2160
     cttgaagcat taaacagaac tatgcaagat ttaaacagca ataataaact tttcggtggt      2220
     gctatcttac ttttgtctgg tgacttccgg cagaccttac cggttatacc tcgctctact      2280
     ttcgcggatg agattaatgc atgtttgaaa caatcattct tatggcgaag tgttgaaaca      2340
     cttcgattga ccataaatat gcgagtacaa ttgcaaaatg atccatcagc acaaatattt      2400
     tccgaacaac tgctagatat tgggaacggt aaaatagaac tgcaaccaaa tacgcaatgc      2460
     attaaactac cagacaattt ttgcactgtt gttcaagata aaaatgaatt gattcagagt      2520
     attttcccgg atatacagaa taattatttg aatcatgaat ggcttagtca acgggcgatt      2580
     ttggcagcca aaaacgttga tgttgacgaa attaacttcc agatacaaca gttgttacca      2640
     ggcgatctga tgtcttttaa atcaatcgat actgttgttg atgaaaatga aagtgtaaat      2700
     tttccgattg aatttttaaa ttcattagat atccctggaa tgccaccaca taatcttcga      2760
     ttaaagattg gttcccctat tattctcctc cgtaatttga atccacctca attatgtaac      2820
     ggtacgcgtt tggtcatcaa aaagatcacc ggaaacattc ttgaagcaac cattttggct      2880
     gggaagttta aaggaaaagt ggtcctgctg ccacgtattc cgatgatacc atcagattct      2940
     accataccct tcaaaaggct acagtttcca attcgtttag ctttcgccat gtctataaat      3000
     aaatctcaag gtcaaacaat gtccatttgt ggtttagatt tggaaaatcc atgtttttct      3060
     catgggcaac tatatgttgc gtgttcacgt gttgggaaac cgtcgaatct atttgtgtta      3120
     gctaaagaca ggttaaccaa aaacattgtg caccgattgg tgttaaatta aattgaaatt      3180
     gaaagtattt ataattcaaa aaaatagata ttaatgttta aaagtttaag actgtctgcc      3240
     ttgcctacct cattcatgag tttaagcgtc acatgttatt tactgtatta tactgtaata      3300
     tacttatatt tgttataaaa ttaaatggaa ataataaatc tgataaattt ttattttgta      3360
     cctattgatt tctgcttaat atcaagtgta agaacatttt aattaattct gttcaacgta      3420
     cttccccttc aaatctcaat ccagtgaatt tgtataccaa catcaacatt ttcgtctttg      3480
     ttcgtaaata atttcattgt actaaagggt tatagtagta gaaagtcaaa taaggagatc      3540
     accatatttt tttacaaata ccatctgtgt gaaaaagcat agtggactcc gtgactgatg      3600
     ttctcttatt gttcctccta gattgtttac tataatgtaa tataacaaaa actttagcca      3660
     cagcaacgcg tggccgggtc agctag                                           3686
//
ID   Helitron-4_DRh repbase;    DNA;    INV; 4898 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4898
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1390-1390 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           560..1795
FT                 /product="Helitron-4_DRh_1p"
FT                 /translation="MPMKDTDSDFDAVSFKEYKEKYQLLRNNLENFDYDGF
FT                 DDFYAKNNIVSDEHYYNIIRAGITRPKLFYRRTPAEKWHNPFNPFVFHCLQ
FT                 SNMDFQIIQDEYACAAYVVEYVNKHNRGISNLQRQIIQVMDENPEFDIVDI
FT                 TKKLSVDLLHAVEMPAQEAAWYLLREPMAKASVTTVYIPTIYPTERQRIRK
FT                 TLKELQELDDDCTNVWKENWFDRLIQFVANYTMNTKGEYYQRKIPRIVRYR
FT                 NYEMANNFNDYRREMVLLHIPFRSEDNDVLAENKFIQIYEDNKKLILERRK
FT                 EFESNLDIEKTLEICRALGREDEEEEQQLRGEANVIFEADPYERLVNDPHS
FT                 AINADIQYATFNKLGAIAKKKENLMETQLFNELMRSANCEQKELLMHIISH
FT                 LQTPNDSPFDDQTYDGNL"
FT   CDS           1755..3866
FT                 /product="Helitron-4_DRh_2p"
FT                 /translation="MIHRLMIKLMMEIYNRFSDTDGYCNAYITCASTGKAA
FT                 VAIDGTTVHTALKISISKLLPLSSEMLHLYRSLFRYIRVLIIDEISMIGAE
FT                 LLAKIDLRLKQITGNHNQDFGGIDVILIGDLRQAPPVRATLIYKPIRTLMV
FT                 GPHLWRSLKFYQLTQVMRQANSQFSSILTKIGNGDILEPSELQLIESRFYT
FT                 KEDALRLCPNGVRLFHTNHAVDTYNNEILQGDPDKVISTATDIITGTNTAE
FT                 QEATCRVRLHKKSVIDTGGLPYQVTFVKGKYYLVTTNIDVTDGIVNGAVGK
FT                 LVHLDFNEDNNICRVWLEFCGSPKVGRKVRKKNARLAIQSRVSPLAVPIEL
FT                 RTSTIPLTTDKKVTVKRKHFPIISACALTIHKSQGGTFDQIVYEYDKTHPQ
FT                 QLVYVALSRVTSIEGLFIVTPHDDPTQFRFHHNRRQATSTSSLLAEFKRLS
FT                 LNTLKTRAQVIVDVISNKKGVSLFTFNVQSLKNHYADLDDAVILKSNILLL
FT                 TETWLANGQQCNIPHFNCIVQFKRDTVRAGGVAIYQNMSDITRIVTPNMEM
FT                 ISKNIQDFSVRHTSVADLCAAQCVMENGITVVMAVIYVSPNQKIVDIQEFI
FT                 HRVLLEYTEEGSRLLRRYNTNLYEIPLILAGDFNINFSDKKSEPLTQFLLE
FT                 EFDSKINNDPTMSTTRFNTTIDAVFSRYLDKIESQMFVSYFSYHKPIVTTI
FT                 ELTD"
XX
SQ   Sequence 4898 BP; 1697 A; 904 C; 973 G; 1321 T; 3 other;
     aaaaagacct tttcgctatg actgacaatt aggggctcca actgctttca tgacactcag        60
     tgcaaatgaa actgggtgga ctgatttgct caaattattg tacaggctga aaaatcatgg       120
     agcaaatgtt tctgatgaat ttctatcgaa aatgtcatat gtacagaaag gtgaacttgt       180
     caacgaggac gcagtcacat gtgcaattta cttcaacaaa ttggtgaatt gtttgttgaa       240
     gatatttgca gtcaaaacga gacaatccat ttggcaaata tcgagtgaaa cattacttca       300
     aacgaataga attccagcac cgtggaagtc cccatgccca catactttta tggttggaaa       360
     atgctccaga taatctatta agtaacagca caggagtcat agatatggtc gacaagttag       420
     tttcagtatc agaatcagaa gcttctggaa atatcaaact cataacacct tacaaaaaat       480
     cggatcccgg gaaaaaagat aattgtcgat ttggagcacc ctttttacca tcgcgtaata       540
     caatcctaca ataacattga tgccaatgaa agatacggat tccgatttcg atgcggtgag       600
     ttttaaagag tataaggaaa aataccaatt actgagaaac aatttggaga actttgatta       660
     cgatggattt gatgattttt atgctaagaa taatattgtt tctgatgaac attattacaa       720
     tataatccga gctggaataa cgcgaccgaa gttattttac cgtcgaacac cagctgaaaa       780
     atggcataat cctttcaatc catttgtgtt ccattgtctg caatcaaaca tggatttcca       840
     aatcattcaa gatgagtacg cttgtgctgc ttacgtcgtc gaatacgtaa acaaacataa       900
     tcgaggcatc agcaatttac aacgacagat tattcaggtt atggacgaaa atccagagtt       960
     tgatatagta gatataacga agaaattgag cgttgatctc ctacatgccg tcgaaatgcc      1020
     cgcacaagaa gccgcttggt atttgttacg tgaaccaatg gctaaagcat ctgtcaccac      1080
     cgtttatatt ccaacaatat atccaactga acgtcagaga ataaggaaga ccttgaagga      1140
     actacaggag ctagatgatg actgcaccaa tgtatggaaa gaaaattggt tcgatagatt      1200
     gatccagttc gttgctaatt acaccatgaa cacaaaagga gagtactatc aacggaaaat      1260
     tcccagaatt gttagatatc gtaattatga aatggccaat aatttcaacg attacagacg      1320
     agagatggta ttattgcata ttccttttag aagcgaagat aacgacgtac ttgctgaaaa      1380
     taagtttatt caaatatacg aagacaacaa aaaattgatt ttagagcgta ggaaagagtt      1440
     tgaatcgaat ttagacattg agaagactct tgaaatttgc agagcgttag gtagagaaga      1500
     tgaagaagaa gagcagcagt tgaggggaga agccaacgtc atcttcgaag ctgatcctta      1560
     tgagcgatta gtgaatgatc ctcattctgc cattaatgct gatatacaat acgcaacgtt      1620
     caacaaactt ggagccatag cgaagaaaaa agaaaattta atggaaactc aactcttcaa      1680
     cgaactgatg aggtcggcta actgcgagca aaaggaactg ttaatgcaca ttatatctca      1740
     tcttcaaact ccgaatgatt caccgtttga tgatcaaact tatgatggaa atctataaca      1800
     gatttagtga tacggacggg tactgtaatg cctacataac ttgcgcttct actggtaaag      1860
     ctgctgtggc gattgatggt acaacagtgc atactgctct aaaaatttcg atttccaaat      1920
     tgttgcctct atcatcagag atgttgcatc tatatagatc gctttttcga tacatcaggg      1980
     tactgattat cgatgaaatc agcatgatag gtgcagaatt gttggctaaa atcgatttgc      2040
     gcctgaagca aattacggga aatcataatc aggattttgg aggtatagac gtaattttaa      2100
     ttggggattt acgccaggcg ccacctgtaa gagccacatt aatatacaag ccaattagaa      2160
     cactaatggt tggacctcat ctgtggcgaa gtctcaagtt ttaccagctc actcaagtta      2220
     tgagacaggc gaattcgcaa ttttcttcaa tactgacgaa aataggaaac ggcgatatat      2280
     tagagccatc agaactgcag ctaatcgaat caagatttta cacgaaagaa gatgctctaa      2340
     gattgtgccc taacggtgtt cgtttattcc acacaaatca cgcggtcgat acctacaaca      2400
     atgaaatttt gcaaggagat cccgataaag ttatttcaac agcgactgac atcatcacgg      2460
     gaactaacac ggctgaacaa gaagctactt gtcgcgtcag attgcacaaa aagagtgtta      2520
     tcgataccgg tggactaccg taccaagtaa ctttcgtaaa aggaaaatat tatttagtta      2580
     cgacgaacat tgatgtgact gatggaattg tgaatggggc agttggcaaa ttagttcatc      2640
     tggacttcaa tgaagacaac aacatttgcc gagtctggct ggaattttgt ggttcaccaa      2700
     aagtcggtag aaaagtgagg aaaaaaaatg ctaggttagc aattcaaagc agagtcagtc      2760
     ctcttgctgt gcctattgaa ttgagaacat cgaccatccc tttgacaacg gacaagaaag      2820
     tcactgttaa acgaaaacac ttcccaataa tttcggcttg tgcgttaacc attcacaaat      2880
     cacagggcgg gacattcgat caaattgtct atgagtatga caagactcat cctcagcaac      2940
     tagtttatgt tgcactctct cgcgtaacta gcatcgaagg tttgttcatt gttacacctc      3000
     atgatgaccc aacacaattc agatttcatc ataatcgtag acaagcaaca tcaacttctt      3060
     cgttattggc agaattcaag aggctatcct taaatacact gaaaacaaga gcgcaagtta      3120
     tcgtcgatgt cattagcaat aaaaaaggtg tctcgttgtt tactttcaat gtacaaagtc      3180
     ttaaaaatca ttacgccgat ttagatgacg cagttattct gaagagcaac attttattgc      3240
     ttaccgaaac gtggttggct aatggtcagc aatgtaatat accacacttc aattgcatcg      3300
     ttcagttcaa acgtgatacc gttcgtgcag ggggtgtagc aatatatcag aacatgagtg      3360
     atataactag aatcgtaacg ccgaacatgg agatgatttc caaaaacatt caggactttt      3420
     ctgttcgaca tacaagcgtt gcggaccttt gtgcggctca gtgtgtaatg gaaaacggta      3480
     tcacggtggt catggcagtc atctacgttt caccgaatca gaaaattgtg gatattcaag      3540
     agttcattca cagagtactg ttagaatata ctgaagaagg ttctcgactt cttcggagat      3600
     ataatacaaa tttgtatgaa attcccctaa ttttggccgg tgattttaac atcaactttt      3660
     ctgataaaaa atcagagcca ctgacacaat ttctccttga agaatttgat tcgaaaatta      3720
     ataacgaccc aacaatgtct acaacaagat tcaatacgac tattgatgca gttttttcga      3780
     gatacttgga caaaattgaa tctcaaatgt ttgtatctta ctttagttac cataagccaa      3840
     ttgtcactac gattgaatta actgattaga tttatatacc tagaataaat aagtaaaaat      3900
     catttttgta taaatgttgt aaattattgt tgtaaatcat ttttcgcctt cattcactcc      3960
     tgatgaattt ctatcgaaaa tgtcatatgt acagaaaggt gaacttgtca acgaggacgc      4020
     agtcacatgt gcaatttact tcaacaaatt ggtgaattgt ttgtggaaga ttttgcagtc      4080
     aaatcgagac aatccatttg gcaaatatcg agtgaaacat tacttcaaac gaatagaatt      4140
     ccagcaccgt ggaagtcccc atgcccacat acttttatgg ttggaaaatg ctccagataa      4200
     tctattaagt aacagcacat gagtcataga tatggtcgac atcagaatca gaagcttctg      4260
     gaaatatcaa actcataaca cataaacaca ccttcacgcg ttacaattac atntacggcg      4320
     ttgatggaat accaatttgg gggtcgaaga aaatattgat aaaaaaacaa cacgaaaaac      4380
     cgacgcacag taccaaaaag agtttcggga acggaaaaaa caaaagcatt ctgataatca      4440
     ggaatccatt caaaaaagaa atgcgcagcg ccagcaaaat tttcgacagc gacagaagga      4500
     cagtaaaaaa aaattggagc agaccacgaa ttgtaataat cagaaagcaa ttgcantgga      4560
     ccgaagccag gggtaccgaa aacaaatcca cagcgtcaaa aggagtttag ggaacgcaga      4620
     aaaaggcaac acatcgaagc gcaggtgttg caattaccaa aaacctcttc tttgggaatc      4680
     agtttggatc cagaattatt ggaaatggag aaaacttttc cacatacgga caaggaagta      4740
     agctagaaat tacacaacat aatgagccga aaaatcaatt acaactgatg gtgcaatacc      4800
     agttgaccag aatcggcaat taaaanagag agtgtgtcga gggacaagca tgaagaatcc      4860
     tgcatcttgt gaaaaatatc gtcgaagtcg ggtgagtt                              4898
//
ID   Helitron-4_FoCa repbase;    DNA;    INV; 7439 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-7439
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2490-2490 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. Several bps of target can be
CC   included in the consensus.
XX
SQ   Sequence 7439 BP; 2332 A; 1449 C; 1507 G; 2151 T; 0 other;
     ttgtttttct attttttcca cataaagctc aaatgtcggg gcaaagtgag acagttggtg        60
     ctatatgttg aacatatagt atgttgttag tcgaactcaa tgttaaattt tttggctcgt       120
     gtaggccacc cttacaagtt atgaagatgg ggtaaaaagc atctggagcg tcttcgaaat       180
     atagggatag ggcacgcaca ccgtttttcg aaattttgaa acgtttttga aataaccact       240
     aaaacgtttt tttcattaaa aaaatgttaa atgttatcgt gaatggaatt tggtgctttc       300
     tagaaagtcg agtcaaatag caattgtttg cataattgat ttggctacga catttgttcg       360
     acgacttttt caaaatgaga cttaggtgag gcgctaaatg caaatctttg aaaatttttg       420
     ctaattcaac taccaatttc tagtcaaggc tacagctatt atggtacatt ttgatgactg       480
     gaacaaaatg gaattggttc agggaaggtt caacttagtt tcctccctct tatgcttttt       540
     tcgaaatctg gctttgtttt cgaactatat gcaaatgaat ctggattgtt atatattgac       600
     aaaatccttt agagcgcaaa taatttaacc ttttcatatg ttgtttgcaa tagtggacag       660
     aaaatatcgg aataaattat tgtaaatcgt aaattattgt tgacaattta ttttttattt       720
     aactaaaaat tatatacgaa tctatcatgc ccaattacct gatgcgaatt aaatcgttac       780
     ttttattgct tgagaatttt gtgtgttttg tttgtacata catatagtat gtacaaatta       840
     gcattcagct caatcctagg gtgccccgtt aggagcgaaa tcatatttac ctttcaactc       900
     cagtaaaaac actgctgagc atttttttat ttacatatac aaattaataa atttatttat       960
     agtttgctag ttttcaaact caagagatat gccgtcaaaa caatttaggc gacgaaagaa      1020
     acaacaagca tggaacaaat cccagtctcc ttccagctca attaacgtag caaatataga      1080
     atttattgaa ccattgttag ataataataa tagggacagt cagctcaacg atcagccctg      1140
     tcaagaaata gaggaagttg agcagccaat ggacgttgac gttggaaatg tcgaaattgg      1200
     tcgtcatcac gaagaaactc ccgagcaaat tctattcatg tccaacatta atcaggctgc      1260
     cgactgccgg tgtcgaattt gtgatcgaac ttggtacaaa aagggcatta agtaagtatt      1320
     ttgtaataaa ttgtttaata atttaaaaca aatatgaata cgtcttgaat tttaactttt      1380
     aattgaatat tgtttttctc agacggctca ctgtgacaca agtaatttat gatcgccttg      1440
     ccgatatcgg taataaatac gacccaatcg tgaaggcaca gctgctacca tttgtttcag      1500
     aaataatcga ctgttgctgc cgttgccatg acaatcttaa gaaaggaaaa gtaccagcca      1560
     cggctctagt caacaacatg ttcgtgccag cctcaccgga agtcatcgta catttatcag      1620
     aaattgaatg caggatgatt agtagagcca aagcgttctt gaaaattttc aaattaggtc      1680
     gaggccgggg acaagcagca ttaaaaggcc aggtcattca ctttgctcaa agtgtggagg      1740
     aagtgcagga acagctgcga cttgggccag ataataatta cggtactatt atcgtgacag      1800
     aatcggtagg aaacttccct cacccgtcaa tttacgagat tcgtccacga ggtttgaaaa      1860
     tatttcattc aagaatattt aatttaaata aacctatttc caaatatata tgcattaaat      1920
     aacaaattat tttacagatg ttcgagatgc cctaaactgg ctactacgac acaatccaag      1980
     ctactccaat gtcaccatcg atcaattcag gatagatgca attcaattaa aagatctcat      2040
     tattcaagag gagcaccaag acacgagccc aagtcctgca ataaatattc gacgtcgagg      2100
     gcatcgtatt cagacaactt tcgccgccgt tgcaggaaaa ccgtggatgt cgtcgttgga      2160
     gctcagtttt tgtcagtctg ctgacatttt cgcagactcc gctgggaagc aatgtactgc      2220
     aatttgtgca gttgccgcag catatgccgc tgtaaagcct ccaggcggtt ggacagtcca      2280
     agatggggat cgtattatga cggaaggcga ccattactac aatcagtgtc gcgaaaatct      2340
     atcaggtata gtcttaatat ttgagtatta ttatccttaa ttaaatttga tgcaatatat      2400
     ttttcatcag cctcatcacg ggtcgttcac aatgaacatc atctcacggc ggacgagatc      2460
     atcggggatg taaataattg ttacggcaag attgttcgtg tgtccctcgt cgatggaggt      2520
     accgtaattt atggagcatt tgataggttt ttgcacgacg ccggacctat aacaactaat      2580
     tccgttgctg ctgctgtttc cgacttccta aactttccat acagttatgg acttctcaca      2640
     gcaggtacgt gaagcaaatt caactgttcg gaaattcaag aataaataat tgtaaaactt      2700
     tctaggagca tatacgatgg gacttatcgg aagtgaggaa cacatcttct atttcgatag      2760
     ccacgctagg agcaaacagg gccataaatc gttcgctcgt tcgggcaagg gcgtgattct      2820
     taaattagat cgcagcaacg ccgccagtat caaccacatc aactctctcg taaataagaa      2880
     ttgcgttgct ggaactaact cggccgtcat cacgataact ccgctcaatc ttgcaattct      2940
     tgacgaccca caaaccaata cggatttgcc agcgaacgat aatcctgcgc cggttcctga      3000
     accagcggca ttcggcgaag aagctctgga ggattgtctt ctacatccta cagatttcgt      3060
     cgagccaaga ttagagtcaa tcagacttaa tcgtactgct gcaccgtgta ttcgtgtaaa      3120
     tgatgaaaat cacctggaag agaaatgctt cgttaaatgt ttccctcacg gtcaatttgg      3180
     attggatgaa gagcgggatc aacgtctacg tcttacaaca catgcctact tccaaaatag      3240
     agtgatgtca gcggattctc gatttcaccg caacgattat ttgttctacg ctctatcaag      3300
     gtctgaggaa tccattattc aatcaaaaat caacgtgtgc ggtaatatga aatatcaaga      3360
     ctcagaaaac gacaacgctc cagcagctga aaatctgcat ctatatatga gcgccatccg      3420
     tggttccaga tcatattgga aaaagtatac tggagatatc atggcaatga tatctcggct      3480
     tggcacacca acattcttcc taacggtgtc atacgacgac atgggttctc cagatgtctt      3540
     aactgcaatg tggaaagcat gtcatgagaa gaacgatcct cttccagata agatagaaga      3600
     tttaccattt gaagttcgtc gcgagctgct aaattcaaat cctgtcgcgg ctgctcgtca      3660
     cttcaacctg agaactcaag aattaatcaa attacttaca accgacgtga ctatctttgg      3720
     caaaccggtt gtcgactaca cattccgtgt agaattccag gaccgtggaa gcccacacct      3780
     tcactctctt atttgggttg acaatccccc tgacttctcc tccactgaag gaatcgcctt      3840
     cattgacaga aacgtttcat gcaggttgga aggaactgga atggatgata ttgtacggcg      3900
     ttatcaatgg cataaggaca caacgacgtg ttttaaaaaa ggttcagaat gtcgattcgg      3960
     atttccgcga ccgttggcca caaaaaccac tataaaacct gatgaatcta gcagaggtcg      4020
     tggagtaata ttgcaacgta aaaaaggaga agagaggatt aataattacc acccaaaact      4080
     tcttggcctc cttcgatgca atatggacat tcaagtagta attggtgtcg caggcgttgc      4140
     atactacatt gcaaaatata taggaaaaaa tgagccggag acacttcgag aggatattcg      4200
     acacaccttg caaacacttc gcgacagtcg gcagcccatc cgcgttcaaa tgcaaaaggt      4260
     aaatactcct tggtaaaagt agtaataatg accaaaattt atgaccaaaa tgtgattatg      4320
     taggtgtctc gtcttttatt gagtcgacga acggtgggct cccaagaagc tgcttaccgc      4380
     atggtaaata ttccaatgcg tcacagttcc agagggttcg tgttcatccc tacttatctt      4440
     cctggggatc gcatccggtt actaaaaaag aatgcttatt tggagagaga tgaggttcaa      4500
     tttgcaaggt gcgcgagaat ttatatttcg tatgtatata tatattaact agtttacata      4560
     tttacgaatt acagcaacat tatcgataag tattgcaatc gtcccgatag tctggccaac      4620
     ttatcacttt tcgagttcgc ttcgaagtat caacctgtac aaaattatca gcatgacgac      4680
     gatgatttag atgaaggacg ggaacaaatc caagaggaaa gatccgttcc agtcagacag      4740
     ccccctttct atctcaagga tagaacattg ggaatgtgga aggaacgtgg aaatttcgca      4800
     attgttaaga gcccaccctt caacagcgat tccgaccacg ctaatttcat ttacagccac      4860
     ctacttttat acgtcccgtt cgcgaatgag aatttcttgg ttgacggtga atctgtcgag      4920
     gaagcatatg aaaggaataa ggccgacatg aggactacag agaattttcc acttattcga      4980
     cctgatatgg agaaactcct tgaggccgcc gtcctgaatg ctgccacttt tcgcgaaacg      5040
     gacgctgaaa ttatttttga gggagaggat gactttgaac atctgcctga tgtttataac      5100
     gcaagtaatg tccttccagc tcaagaaaat tacagtatac ctggccttaa tgaaacagat      5160
     ttcgaaatag agggtctaaa atgaatgaac atcaaagaca aatttacgac atggttaacc      5220
     aacacatcac ggatcctagc catggacaat ttcaactttt catctccggc gctggtggta      5280
     cggggaagtc attcctgatt tctctattgt ccaccctaat tcgcaccaag gtgggtggtc      5340
     ctggcctttc aagtttaatt ttggcagctc ctactggtgt ggctgccttg aacataaatg      5400
     ggcaaactct tcatcgtgcg tttcatctcg cggttgagtc aggttcggtt ccacgatatg      5460
     ctccactggg tgctcaaatg ttgcaaagaa tgcgggacaa gttttctgaa gtggaatgga      5520
     taatcatgga cgaagtttct atgatatcat acgaagtaag ttaaccaaca aataatataa      5580
     caatgcttta aatatctaca aatcagtgat ttattattat tttaatctac aggtttttcg      5640
     gcaagtgagt cgtcgcttag gtgaatgtta tgataacact gatccatttg gtggaaagaa      5700
     cattatagtg gtaggagatc tcttccaact ggaaccagtt aatggtcact gtatctacga      5760
     ccagcctcgt caattaggag gagaggaaca tctttggcag aaatttgcat tttgtgagct      5820
     cacccttaat atgagacaag gacaagaccc aattctcaat atttgcaaca accttcgtga      5880
     aggacaaata acttctgcag atctccacaa acttcgttca agagaattta acgaggagac      5940
     atccagcgtt gacataaaag ataagtttaa agatgcaata cggatttacc cgactagaaa      6000
     tcaagcagca gtatataatc gacgtaagac gacaaatcta agagatgatc cgaatatcaa      6060
     agtctaccaa ataaaagccc gagatacatt cttcactgga accaaagctg gtactcgtgc      6120
     tcgattggca tacagtcacc gggatagcaa caaatgcggt ggcttcctac catctattga      6180
     actagcagtt ggctccagaa tcatggtaat acgaaattcg cagaataacc ggtatctagt      6240
     gaatggctcg atgggtacgg ttgttggttt caactgggac gagctagcga gggaccaaca      6300
     tcatcaagga gatttgccat cgagcatcag ggtaaaattt gatgacttac gaatagctgg      6360
     aacgccggat ggaattttcg acctgaaacc ggcggatgta gtgtacacag gaaaaagaaa      6420
     cgaagaaatc cagcggtgta tgttacccat tgttctgtgt tgggcggtaa cggttcataa      6480
     agtacagggg gtgaccgtag accaagcagt tatttattta ggagcggaga tatttgcaca      6540
     cggacaggcc tatgttgccc ttagccgagt acgaacactt gatggggttg ccattgtgga      6600
     gatggacgac aacaaattaa aagcaaagcc caccgagaaa ttagttgtag agatggctag      6660
     gctccgaagt ttgtagttat acatagatat ttacataact tcgtactgtt gaaaaataaa      6720
     tatttccatt ccaacaaaac ttgatgcata tttattatgt ttactattta tgatttaatg      6780
     catatataat ttcaccaaaa ctctaggtga aaagcgtcaa ataagtgggc ggtaaaaccg      6840
     ctgaaaactc tattttttca atagtagatc attatattgt tacgaagaat tgagagaaaa      6900
     agcaaaaaac aaggcgtaac atctctattt aaacttaata tgtcgcctga aaaaataggg      6960
     gcaattgcct gtttaatgac ttgataaata agtgaattta atattaacct actgccattt      7020
     ggttacttca caattcagtt tctccagacc taattgatgt atttttagtc ggaaggcagt      7080
     ttttaatagc tatgtcaaaa atgatttcaa caacagtttt taagtcattt taaattatat      7140
     ggataaataa acgctcagaa atggattgat aaaatcatta caggtataaa aggtataact      7200
     ttgatttaag atatacctac ataggtcaat cttggcaatt tatatgaaaa taaactaaac      7260
     attaaattta cgtattaagt cattgatcaa gcaattgccc ctattttttc aggcgacata      7320
     ttaagtttaa atagagatgt tacgccttgt tttttgcttt ttctctcaat tcttcgtaac      7380
     aatataatga tctactattg aaaaaataga gttttcagcg gttttaccgc ccacttata       7439
//
ID   Helitron-4_HMM repbase;    DNA;    INV; 3175 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-4_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3175
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2638-2638 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. The 5' end is uncertain. An
CC   insertion of RTE-2_HMM-like non-LTR retrotransposon is excluded.
XX
SQ   Sequence 3175 BP; 1091 A; 486 C; 553 G; 1041 T; 4 other;
     cgtgatgagc attttctgtt gaaataaaaa aaaattggat ccaactttaa aaaattgcca        60
     gaaaagatat aaaaacaaca cttttctaca ttcccataca aaagatccgt attaatactt       120
     aaaagtcaat ttggacttta ataccgtact ataaagttta aatgttagtc gctggattcc       180
     gggaaggcaa aacaattgac tgacgttagt atcgtataaa tattatagct ccagatccca       240
     gagtcgccag gactattagt cttacatgta gttaagacat atgcttacat attatatgct       300
     tactcactaa tttgaaaata ggatccttta aaaggtagca aaaaataacg gtatatctct       360
     ttctgggcaa atgatgaagc catcggattg atctggttat atatgaggga tctttaaata       420
     gtccgtaaat aatatattta aattttaaag aacctttagg aagtttggca gaagtaaagg       480
     tacacgtgaa agaatgtgaa atatacattt tttactttaa aacatatata aaaacgagaa       540
     tttctatttt aatgtaactg gaagtgtgct ttaagttggc actatctctg aaggtttttt       600
     taagttagag agtatgcata cagtcttaag tacatattag atttcagctt tgctaaaatg       660
     atgtaggtct gggggccctg ggatctcagt cttttaatgt caatatttgt caatatttct       720
     atggtaaaat gtcacttgaa atgtaaaagt ctctttgttg taaatgtgca tctacattat       780
     taaatctaaa agccacaaat tttataaaat taataaagtg ttgtgtattt gtgacttact       840
     aaatatgcct tctataaggc ggtggacaaa tttaggcaga agaatctaat cgtactgccc       900
     agaacgtgaa gattgcaatg aacgtgaaaa aaatcgattg agacagaccc gtaaagcacg       960
     atagtttact actactgata atggtgcaaa tttgaatcga gctccttttt gttatatata      1020
     tcaattgatg ccagcagtgc ctacagctgt gttgctattg gacctatgaa ctcagttagc      1080
     caatattgta aggttattgt aaaaattgaa atttaaaaat tgttattgta aaataaagcc      1140
     aatagattgt gttgtgtaaa ttgataccgt aacttccacc tccagagcca ttgtactcat      1200
     tggttttagg aataggagca tattccatat acacttctta aaaaatattc aacaatacaa      1260
     cgactgcttt caaatgactt catttggagt aacaaaagca gttcgggaga atttaatgct      1320
     aatttttaag ttttgtcata gtatctgcag ttgcatgtat gttaatcata actattatag      1380
     cccatacgca ttacaataca tttttccctc aacagttaca aggtcaaata tatcatagag      1440
     caggtttatt gttaccagta ccagatagcg actacaagtc ttagcaaatt tattttatga      1500
     aaaattctcc acaagaaatc aacctacgtt gtacacataa caattcactg aaaaggtcaa      1560
     tagttgaaca attacaaaaa ttatttcacg aatacaatta actaattata tttttcaaaa      1620
     gtgcaatgtt ttaatgcatc ttctatcgat gaagttgcca ttgttgaaat tggagaaaat      1680
     ttggagtcac gtgaaataat cgattacaac gtattaagga aacacatcgc tcatatgatg      1740
     cactgcaata tcccattata ttttggcaag ttgaagatgg ctatgatttc ccaatcaaga      1800
     tgataaatgc aggtaattga aatattttgt ttatgagatg ctatgtcatc tacaatatca      1860
     cttactaaac actttaattt gatttgacag ttgaatttag aaagaacttt aaaagatcta      1920
     cggattttat tatcaggaga ttttcgccaa acattgccag tggttccacg ttcaaagcaa      1980
     gctgatgaac tgaaatcatg tttaaagtcc tccaaattgt agaaacatgt caaggtatta      2040
     catttaagcg agaatattcg tgtcatgatg caaaatgatc aatctggaga catattctct      2100
     aattaactca ttgatattgg taatggcaaa cttcctatag atgcgctgat tggctgcatc      2160
     acctttcctg atcgtttttg tcagttaacg taatccaaag atgaactcat tcatcataaa      2220
     gtgcttccaa atgttgctga aaattattta ttccatggtt ggttgaacgg aagagcttta      2280
     ctggctgcca aacacactga tataaatgaa ttaaattttc aatttccaag atgtaattcc      2340
     tggcgtaatg aggacatata aatcagttga tacggctact aatgaagatg atgtcgtgaa      2400
     ctatctaccg gaatttttaa actcacttga tttgccaggg tttccgccta acaatcttca      2460
     tggtccattt aagtggcggt tggcggtttt taattggagc ctcttcaatt aaagcttgta      2520
     tgtgtagttg taattttgcg aaactttgta aaggcacacg attagcgata aaaaaataat      2580
     gaataacgta atagaagcaa tcatattgaa aggaaagtat aaaggagaag actttttgat      2640
     gatgcggggc atcccaatga tttcgactga cataccatwc gagcttaaaa gactacagtt      2700
     tccagtacgg cttgatttcg caatgactat aaacaaatcc caggggcagt tatcgagtgt      2760
     ttgtggtatt aatatagaaa actcatgttt ctcgcatggt ctgttgtatg ttgcctgttc      2820
     ccgtgttgga aaaccatctg ckctgtttgt ttacgcgcca gataaccaaa caaaaaaaac      2880
     gggtaccata aagttctaca atgaaaatga aactgaattt agaataagta aaaataaaat      2940
     ataataagta ggtatcataa taagatatcg gaaattgtta tttttattgt agtttttaat      3000
     gaatattaca agaatttaaa gtgatttaag ttttttttkw atattatata attgttgact      3060
     tatcaacttt ctttattttt ttatcttact agctgacccg gtgtcccgaa tagtagaata      3120
     catattaaaa aaaagaatcg actgtaaggc gatacgaagt tcgcgggtct gctag           3175
//
ID   Helitron-4_NVi repbase;    DNA;    INV; 3763 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   15-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3763
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 765-765 (2009).
XX
DR   [1] (Consensus)
XX
CC   The conensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(142..879,869..1168,1181..2536,2527..2739,
FT                 2743..3525)
FT                 /product="Helitron-4_NVi_1p"
FT                 /translation="RIIMYLTRNSNHDKRRYNAAKCDEVAVVFVGENGQPP
FT                 EDRDVCIYSKHRAPNIPYISKHVDPMSYPLMYPNGGFGWMPNMKNKNNKNN
FT                 ISMLQFYCHKFSIRNDFNPYLNLGKLTQQYIVDAWVKVEGSRLFFLNKNQH
FT                 QLRTDLYKGVMDHLKNKSNDDNVKIGKMVILPSTFSGSPRSLQQNFLDSMT
FT                 IVQKYGKPDLFITMTCNPKWKEIKQNLRKNESAIDRPDLVAKVFNAKVNEL
FT                 LNEILMKFFKKNIFGKCIAYTYVIEFQKRGLPHMHLLAFIHKNHKLNNADD
FT                 VDKLISAEIPDEMKYPRLHNIVKQSMIHGPCGKNNLNSPCMDSKTKKCTKN
FT                 FPKQTTFNNTGYPLYRRSNNGKQIRFNKNNIADNRFVVPYNPYLLLKFNCH
FT                 INVEVCSTIQCVKYLFKYCYKGHDCAFIKMSQGNNENECXEENFNYDEIKQ
FT                 YLNTRYVSPPEAMYRLLQYAMYVLSHVIYRLAVHLKNEQFVFFKEGSEEEL
FT                 INKNLNTTLTAWFELNANDPQARQYLYVDIPYFYVFNEKTKKWTPRKRVWK
FT                 PIISRMYFVNPKDRERFFLRLLLLHVKGAQSYEELKTLENVTYATFHEVVV
FT                 ARKLITTDEEWDKCLEEAIKVEFPKALCNLFGYICVFHHPVNVKELFEKYK
FT                 AYFYSPLLTKEIRENISLKHINSILTSHGYTLTDFNLPKFSEDVEETNYEE
FT                 FYATNKIENDSLYNISSLTNKQREIFDAVINSVINKANQVKCFFIDGPGGS
FT                 GKSYLLNTIITHLNKEKISVLPVAWTGIAANLLINERTSHVIFKLHHITSL
FT                 NINEDSTCNITPNSIYRKNLKNVEVIIWDEITMTSKHAFQAVDKLFKDLCN
FT                 NDIEFGGKVMIVSGDFQTLPVVKHGNRTKIIENCVKNSHLWSKFQIMTLKD
FT                 KMRVSNCDKEFKQWLLKIGDGKYSNKFEMDNDITLLPTELLSTSDIIMEIY
FT                 GDCFDNNNANKLCERVILAPKNNDVLKINNNILNRMQGDVREYLSVDSCED
FT                 DNKEMLPIEFLNSLTPNGLPPHKLRLKVGAVIILLRNLNLNDGLCNGTRLI
FT                 VRKMMQFCIQAEIISGKQFGKVVLIPRIDLTSSKEEIPFDMTRRQFPVRLG
FT                 YVMTINKSQGQTFNKVGVYYM*"
XX
SQ   Sequence 3763 BP; 1532 A; 472 C; 597 G; 1160 T; 2 other;
     atgttcttta atgctattaa aggaattaga taattttttt cgacaagtaa acatatacgc        60
     taaatcatac aaaatgatgc acgaagtcga aatggaagaa caaaatcgtt tgaaaaacaa       120
     caacgttgag tttaatagta aagaattata atgtatttaa cacgcaattc taatcatgat       180
     aaacgtagat ataacgcagc taaatgtgat gaagtagctg tggtatttgt aggtgaaaat       240
     ggtcaaccac cagaagatcg agatgtatgt atatattcaa aacatagagc acctaatata       300
     ccgtacatta gtaaacatgt agatcctatg tcatatccac ttatgtatcc taatggaggt       360
     tttggatgga tgcccaatat gaaaaataaa aataacaaaa acaatatttc aatgctacaa       420
     ttttattgtc ataaattcag cattagaaac gattttaatc cttacttaaa tttaggaaaa       480
     ttaactcaac aatacattgt tgatgcttgg gtaaaagttg aaggttcacg attatttttt       540
     ttaaataaaa atcaacacca attaaggaca gatttataca aaggtgtcat ggatcactta       600
     aaaaataaaa gtaacgatga caacgtaaaa attggaaaaa tggttatatt accttcaaca       660
     ttttcaggaa gtccacgatc gttacaacaa aactttttag attcaatgac aatagttcaa       720
     aagtatggta aaccagatct tttyattact atgacatgta acccaaaatg gaaggaaatt       780
     aaacaaaatt tgagaaaaaa tgaatcagct attgatagac ctgatttagt agcaaaagtt       840
     tttaatgcaa aagttaatga attattaaat gaaattcttt aaaaaaaaca tttttggaaa       900
     atgtattgca tatacttatg taattgagtt tcagaaaaga ggtttaccac atatgcactt       960
     gttggctttt attcataaaa atcataaact gaacaatgca gatgatgttg ataaacttat      1020
     aagtgcagaa atacctgatg aaatgaaata tccaaggtta cataatatcg ttaagcaatc      1080
     aatgatacat ggcccttgtg gtaaaaataa cttaaattca ccatgtatgg atagcaaaac      1140
     aaaaaaatgt accaaaaact ttccgaaata gtttaattag caaactactt ttaataatac      1200
     tggatatccc ctttatcgac gaagtaacaa tggaaaacaa attcgtttca ataaaaacaa      1260
     tatagctgat aatcgatttg tagttccata caatccgtat ttattgttga aatttaattg      1320
     tcatattaat gttgaagtat gttcaactat tcaatgtgtc aaatatttat ttaaatattg      1380
     ttataagggg catgattgtg catttataaa aatgagtcaa ggtaataatg aaaacgaatg      1440
     traagaagaa aatttcaact acgatgaaat aaaacaatat ttaaatacaa gatatgtaag      1500
     ccctccagaa gcaatgtatc gtctactaca atatgcaatg tacgttttat cacacgtaat      1560
     ttaccgatta gctgtacatt taaaaaatga acagtttgta ttctttaagg aaggatcaga      1620
     agaagagttg attaataaaa acttaaacac aactttgact gcatggtttg aactaaatgc      1680
     aaacgatccg caagctagac agtacttgta tgttgatata ccatattttt acgttttcaa      1740
     tgaaaaaaca aagaaatgga caccaagaaa aagagtttgg aagccaatta taagtagaat      1800
     gtactttgta aatccgaagg atcgtgaaag atttttttta agattattat tattacatgt      1860
     aaaaggggct caatcttatg aagaattaaa aacattggaa aatgttacat acgcaacatt      1920
     tcatgaagta gttgtagcta gaaaattaat aaccaccgat gaagaatggg acaaatgctt      1980
     ggaagaagca atcaaggttg aatttcctaa agctctgtgt aacctgtttg gttatatatg      2040
     cgtatttcat cacccagtaa atgttaaaga attatttgaa aaatataaag catattttta      2100
     cagtccattg ttaactaaag aaatacgtga aaatatctca ctgaaacata tcaattctat      2160
     tttaacaagt cacgggtata cactgactga tttcaattta cctaaattta gtgaggatgt      2220
     tgaggaaacc aattatgaag aattttatgc aacaaataaa attgaaaatg attcattata      2280
     caatataagc tctttaacga ataaacaacg tgaaattttc gatgcagtaa taaatagtgt      2340
     aattaataaa gctaatcaag tgaagtgttt ctttattgat ggacctggag gtagtggaaa      2400
     aagctactta ctaaatacaa ttatcactca tttaaataaa gaaaaaataa gtgttttacc      2460
     tgtagcatgg actggtatag cagcaaattt attaataaat gaaagaactt cacatgtaat      2520
     ttttaaatta catcattaaa tataaatgaa gattcaacgt gcaacattac tcccaattca      2580
     atatatagaa aaaatctgaa aaatgtagaa gtcataattt gggatgaaat aacaatgaca      2640
     tcaaaacatg cttttcaggc agtggataaa ttatttaaag acttatgtaa taatgacatt      2700
     gaatttggtg gcaaagtaat gattgtatca ggtgacttct gacaaacact acctgttgtc      2760
     aaacatggga atcgaacaaa aattattgaa aattgtgtga aaaatagtca tttatggagt      2820
     aaattccaaa taatgacttt aaaagataaa atgagagtta gtaattgtga caaagagttt      2880
     aaacaatggc tattaaaaat tggagatgga aaatattcca acaaatttga aatggacaat      2940
     gatataactt tacttccaac agaattatta tcaaccagtg atataattat ggaaatttat      3000
     ggagattgct ttgataataa taatgccaat aaactttgcg aaagagtaat tttagcgccg      3060
     aaaaacaatg atgtactaaa aattaataat aacattttaa ataggatgca aggcgatgta      3120
     agagagtatc taagtgtaga ttcatgcgaa gatgataata aagagatgtt accaatagaa      3180
     tttttaaatt cacttacgcc aaatggccta ccgcctcata agttacgttt aaaagtaggt      3240
     gctgtaatta ttttgctgag aaatttaaat ttaaatgatg ggctttgtaa tggtactcga      3300
     ttaatagtaa ggaaaatgat gcaattctgt atacaggcag aaataattag cggtaaacaa      3360
     tttggtaaag ttgttttaat accacggatt gatttgactt cttcaaaaga agaaattcct      3420
     tttgacatga caagacgaca gtttccagta cgattaggat atgtcatgac aatcaacaaa      3480
     tcacaaggcc aaacatttaa caaagttggt gtctattata tgtagcatta tccagggtaa      3540
     cgttaaaaaa atttaacaat tttactttca aaaaattaag tttcgaggat aaaagtaaaa      3600
     ataatgatga ttcaaataag atatatacga aaaatatcgt atatcatgaa atattaaatt      3660
     aataataaac taataaaata tgtcagttat tgagaaaaga tgtgaatgga ttcacggcac      3720
     acagatacct taagtatact ttaatataat agtagaagta gat                        3763
//
ID   Helitron-5_DRh repbase;    DNA;    INV; 4612 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.08, Created)
DT   05-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-5_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4612
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1391-1391 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1399..4563
FT                 /product="Helitron-5_DRh_1p"
FT                 /translation="MNFYAYRLMIRLDVDNHLLRYRRLFQQYCVDMYVKVE
FT                 TERLNFIRFNQSKLRSDEYIHLRDAIATEGHAANIGCLTILPATYVGSPRH
FT                 MHEYAQDAMTYVRNYGRPDLFITFTCNPKWPEITNLLLPGQTSSDRPDITA
FT                 RVFKQKITVLMNYIVKQKVFGAVRCWMYSVEWQKRGLPHAHILLWMFDKIR
FT                 PDQIDSIISAEIPDKQTDPELHSIVTTSMIHGPCGVHNPESVCMDNGNCTK
FT                 RFPRPLTAETISGHDGYPLYRRRSPDDNGKWIEVMVKRNETNVTVIVDNRW
FT                 IVPYCPLLSKTFSTHCNVEYCNSIKSIKYVCKYVNKGSDMAVFGIADPNAN
FT                 DEVTKFQLGRYVSCNEAIWRLFSFPIHERHPTVVHLSVHLENGQRVYFTDA
FT                 NAAQRAERPPATTLTNFFSTCESDPFARTLLEEEVHPRQDECFYLRLLLVN
FT                 IRGPTSFESLRTVDGVLCASFREACQRFNLLENDAHWDSTLADAIVSASTN
FT                 RIQSLFAIIIATCHPSNPTALWDNYKDHMVRRTTDNFTITEEMRNEALIQI
FT                 EDICMLMCGSLLATLGMPAPNRSMHDAFNREFQREHHFDQTNLAERVRTNV
FT                 PLLNAEQKNVYDSIMKVVDDETGGLYFLDAPGGTGKTFVISLILATIRSRS
FT                 QIALAVASSGIAATLLEGGRTAHSALKLPMNLLTVDQPTCTMSKNSATAKL
FT                 MRECKIIIWDECTMAHKRALEAVDRTMKDLRGDSKLFGGALILLSGDFRQT
FT                 LPVIPKSTAADEVNACLKSSSLWRYVKKFKLSTNMRVALQNDPSAAEFSRQ
FT                 LLALGNGEIPVDVSTGLISFPANFCEFTSSKEELITKVFPDIAQNYKNLDW
FT                 ISERAILAAKNKDVDSLNFVIQSQIAGELHSYRSVDSVTDEDEATNYPTEF
FT                 LNSLDVPGTPPHNLQLKVGSIIIMLRNLNHPRLCNGTRLSVKKLMNNVIHA
FT                 TIIKGKFKGEEVLIPRIPIIPTDLPFQFKRIQFPVRLAFAMTINKSQGQSL
FT                 DVCGINLEYQCFSHGQLYVARSRVGKPSSLFIFAPDNKTKNIVYHIALH"
XX
SQ   Sequence 4612 BP; 1357 A; 1006 C; 1021 G; 1227 T; 1 other;
     atataaaaat ggtgcaaaaa atgtacgcca tcgcaaaaca agagaacggc tgggccgatt        60
     tggctcaaat tttttttcag ttgtttgtaa ttgccagaag aaggttaata cataagaaaa       120
     ttttgggaaa acctgccgga aaagtcgcta tcggctcaag agatgtattc attgttgtac       180
     ataaaactgt taaaacagca gtctttggaa ataatgcctt cattgttgta cataaaactg       240
     taaaaaatcg agttaacgaa acattgccaa agttttaatt ggaaatgcga tacattctca       300
     gaatgtccgt aataatcgaa cgcaagaggt acgtgcagaa ataaacgcat cggcacgcgc       360
     ccgaattgca cagcttcgcg ctgcacaaag accacctcaa gcccgacaaa atgtgagtag       420
     aagaagacca gccgcaaatg aaaacttgaa tcgcgctgca ttcgcataca attccgaaac       480
     accctacaaa gatcatagct gcgttgttat tggttcattg tctgtcgtat gtcagcattg       540
     caatgcactg aagtttcgat tggaaacccc cggcttatgc tgtgcaggtg gcaaaattaa       600
     attgcccgtt ttggctcatc caccagagcc attgtattcg ctactatatg gaaattcagc       660
     ccaatcaaac agcttcctaa agcttgcaca aaaatataac ggatgctttc aaatgacgtc       720
     atttggagcc gaggttgttc atcaaccagg ctacaatccg agttataagg taatggcgtc       780
     ttttttcaaa attgcatccc aacattcaga ttcaagggca aattcaccat cgagcgggcg       840
     ctttgttacc accaccaaac aaagatcata aattccttca gatctacttc attggtgatt       900
     cggaagatga actaaatcag cgttgtgcaa ttttcactgc aactaaacgt gaaattatac       960
     aacaattgcg aaatcttctg catgagcgta atgaattggt cagattgttc aaaaccgcat      1020
     tggatacaat gcattctgac gaccacaaaa tcattatcag cgctgacaaa aggcccactg      1080
     gaagccatgc aagacaattt aatgctccca ctattaatga agtcgcagtg gtgattgttg      1140
     gcgagaatgt ggaatcacgc gatattgttc tcaagcgtcg ggatgatggc caattgcagc      1200
     gagtttatga gactcatcgg tcatatgatg cacttcaata cccgttgatg ttctgtcgtg      1260
     gagaagatgg gtatcacttc aacataaaga tggtcaatcc aacgacaggt ttgtttacaa      1320
     gtcatcactt ctttttgatt ctacaactaa gtttgaattc aaattttagg agaagaaacg      1380
     aataagaagg tcagctctat gaatttttat gcgtatcgat tgatgattcg actagatgtt      1440
     gacaatcatc tgttgagata ccgccgtttg tttcaacagt actgtgtcga catgtacgtc      1500
     aaagtagaaa cggagcgtct caatttcatt cgtttcaatc agtcgaagtt gcgctcagac      1560
     gagtacatcc acttgcgtga cgccatcgct actgaaggac acgcggccaa catcggttgt      1620
     ttgaccattc tcccagctac ttatgttgga agcccgcgcc atatgcatga gtacgctcaa      1680
     gatgcgatga cgtatgtccg taattacgga cgcccggatt tattcatcac gttcacatgc      1740
     aatccgaaat ggcccgaaat tacgaatctg ttgcttccag gacaaacatc tagcgatcga      1800
     cctgacatca ctgcacgagt attcaagcaa aagatcacag tacttatgaa ttacatcgtt      1860
     aagcagaagg tttttggcgc agttcgttgt tggatgtact cggttgagtg gcagaagcgt      1920
     ggcttaccac atgcgcacat tctgctttgg atgttcgaca agatccgacc agatcaaatt      1980
     gattcgatta tttcagccga aataccagat aaacaaactg atcccgagct gcattccatt      2040
     gtgacaacga gcatgatcca tggcccttgc ggagtccaca acccagaatc agtatgcatg      2100
     gataacggaa actgcacaaa acgatttccc cgtccgttga cggctgaaac aatcagtgga      2160
     cacgatggat atccattgta taggcgtcgt tctccagatg acaacggcaa atggatcgaa      2220
     gtaatggtga aacgtaacga aacaaacgta acagtaatcg tggataaccg ctggatcgtt      2280
     ccatattgcc cgcttttgtc gaaaacgttc tcaacgcatt gcaatgttga gtactgcaac      2340
     tctatcaaat ccatcaaata cgtttgcaaa tatgtgaaca aagggagcga catggcggtg      2400
     tttggcattg ctgatccgaa tgcaaacgat gaggtgacga aatttcaact tggacgctac      2460
     gttagttgta acgaggccat ttggcggcta ttttcatttc cgattcatga acgtcacccg      2520
     actgtcgtgc acttatctgt tcacttggag aacggccagc gtgtctactt tacggacgcg      2580
     aacgcagcgc aaagagcaga acggccacca gcgacaacgt tgacaaattt cttttcgaca      2640
     tgcgaaagcg atccgttcgc aaggacttta ctcgaagaag aagttcatcc acgccaagac      2700
     gaatgcttct atcttcgctt gcttttggtg aacattagag gccctacatc cttcgagtcc      2760
     ctgcgtactg tggatggtgt gctgtgcgcc agttttcggg aggcttgcca acgttttaac      2820
     ttgctcgaaa acgatgctca ttgggattca acgctcgccg atgccattgt ttctgcgtca      2880
     acgaatcgaa tccaatcatt atttgcaata atcatagcca catgtcatcc gtcgaacccg      2940
     accgcactgt gggacaacta taaggaccac atggttcgca ggacaactga taattttacc      3000
     attaccgaag aaatgcgcaa cgaagcgtta atacagatcg aagacatttg catgctcatg      3060
     tgcggcagtc tactagcgac attgggaatg ccagcgccaa atcgttcaat gcacgatgct      3120
     ttcaatcgcg agtttcaacg ggagcaccac tttgatcaaa ctaacctggc cgaaagagtc      3180
     cgaacaaatg tgccgctttt gaatgccgag cagaagaacg tgtacgattc gataatgaag      3240
     gttgttgacg atgaaacggg aggcttatac tttctcgatg ctcctggtgg gacaggcaag      3300
     acattcgtca tttcgttgat tctggcaacg attcggtcaa gatctcaaat tgcgttggct      3360
     gttgcatcat ctggcattgc tgctacattg ttggaaggcg gtcgaactgc acattccgct      3420
     ttgaagctac ccatgaatct tctgacggtt gaccagccaa cgtgcacgat gagcaagaat      3480
     tcggcgacag cgaaattgat gcgagaatgc aaaataatca tttgggatga atgcacgatg      3540
     gcgcataaac gagctttgga ggcagttgac cgaacgatga aggatttacg aggtgattcg      3600
     aaactatttg gtggggcttt gatattgctg tccggagatt ttcgtcaaac gcttcccgtc      3660
     atcccgaaat ctacggctgc cgatgaagtt aatgcatgcc taaaatcgtc ctctttgtgg      3720
     cgatatgtca agaagtttaa attgtccacg aatatgagag tcgcattgca gaatgacccc      3780
     tccgctgctg aattctcgag acaactgctg gcgcttggca atggcgaaat tcctgttgat      3840
     gtttcnactg gactaatatc gttcccagca aatttttgcg agttcacatc gtcgaaagag      3900
     gaactcatca caaaagtgtt tcccgacatt gcacaaaatt ataaaaatct cgattggatt      3960
     agtgaacggg caatactagc agcgaagaat aaggacgtag atagtttgaa tttcgttatt      4020
     caaagtcaaa tcgctggaga actgcattca tacagatccg ttgacagcgt gaccgacgag      4080
     gatgaagcga ccaactatcc gacagaattt ttgaactcac tggatgtgcc aggaactccg      4140
     ccgcataatt tgcaactgaa agtgggatca attattataa tgctgcggaa tctaaatcat      4200
     ccgagattat gcaacggtac gcggttgtcc gttaaaaaac tgatgaacaa cgtgattcat      4260
     gcgacgatta ttaagggcaa atttaaagga gaggaagttc ttatcccacg aattccgatt      4320
     attccaacag atcttccatt ccaattcaag aggattcagt tcccagttcg attggcattt      4380
     gcgatgacaa tcaataaatc gcaaggccaa tcgttggatg tctgcgggat taatctggaa      4440
     tatcaatgtt tttcacatgg gcagttatac gtagcccgtt cgcgtgtggg aaagccgtca      4500
     tcattattta tttttgcacc ggataacaaa acaaaaaata ttgtttatca catcgctctc      4560
     cactgatttc gagtcaaata aatttttatg aaatttgaat taccagtgtt tt              4612
//
ID   Helitron-5_FoCa repbase;    DNA;    INV; 9074 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-9074
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2491-2491 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. Several bps of target can be
CC   included in the consensus.
XX
SQ   Sequence 9074 BP; 2934 A; 1836 C; 1837 G; 2461 T; 6 other;
     ttcttagtga ggcaaatacc aagcaactaa aaaattacta agtatgcatt tgacccaccc        60
     caaaaaagtg accatctgcg atatctcagt cgtttctcaa ccgattttga tgaaattttg       120
     caccggtcat tgttacataa tctagaaaag ggatctgatc cgactaagcg attctgtgat       180
     tttgaccgga gttatgggca aaaatgtggc cttaaaaaca catttgtaat tattgctaat       240
     tactggcaaa ctttatcaac agtttgatac ccacgaattg tagagcagtt tatcccgaaa       300
     attttaagta taaatatatc aaaatccgct aagaattggc ttagttattc caatttgaag       360
     ttcagaaatt aaaagtaaga tattgaagaa atcgtcattg acaacgacgc aagactaaca       420
     acacaagaat tagaaaacac tcccacaaaa taaccattca aattgtaaat gcaacagtat       480
     tgctaaactg cgttacatgg tcattgtctt actcctttac acctgggatt ttggatttac       540
     gaagtttagc ccgtcgtcag catgcgacta tttcctccac ctcaccttgg gttttctggg       600
     ccttagtccg tcaggtttcg gcctttctgg gctttggtcc gttagtcctt ggcgcggtgg       660
     agcaaacgac aaaaggcagt tgcaagcagt ggccacggaa gttgtggcgg cagatgacgg       720
     ggacatcgaa caaccgaggg aaggtccctc tgtccacacc cttccacggc cactcgtgga       780
     gagaagaagg agataaaaat gagtagagct agataagatg acaaaatgag tgactagcct       840
     ccgtccccac acttccgctg ccactggttg caaccaaatc gtaatttgaa tgacatcatt       900
     ataagaaaca gtagcaaatc aaagacttac tgtttgctta tgctaccgcc ccgcccgttt       960
     ttcgttactt ttgcaacttt tactcccacc actccaccac tctttactta ggcgacccgc      1020
     actacccacc attctttatt tgtgcaacaa gcactacccg ccactcttta cttgtgcaac      1080
     aagcactacc cgacactctt gatttgtgca agcactaccc gccactcttt acttgtgcaa      1140
     caagcactac ccgccattct ttatttgtgc aacaagcact acccgccact ctttacttgt      1200
     gcaacaagca ctacccgaca ctcttgattt gtgcaaccag cattacccgc cactctttac      1260
     ttaggcgacc cgcactaccc gccattcttt atttgtgcaa caagcactac ccgccactct      1320
     ttacttgtgc aacaagcact gcccgccact ctttacttgt gcaacaagca ctacccgcca      1380
     ctctttaatt aaaaaaacag ctccacccgc cagtctatac ctatgcaacc gcccaacttt      1440
     taccgtcgca tgctgacgat tgcaattcat atacatatac cagcataaga aatggcgttc      1500
     aacattccgt atcacatact ctgcaatgcc gttggaggtg atctgcgagg tgaaaattat      1560
     tgcgaagcaa aatcggtgta tggaatggct ctaatcaaat taggagaaga aaatacattc      1620
     cacgcacgaa aattcttgaa agaagtcata tcattttgta tcgaagtaag taaagaaaaa      1680
     tatacaaaca aaattcaagt gatgaaatta aaactgatct cattttcgaa ataggaagtt      1740
     aactgtaccg agtccacgtg tttgtcaccg ttgacaccat tcattggact gcgagactcg      1800
     gagatcattt cagtacttga ggatgaatta aaacaaaagc caactaatta tgtagtaccg      1860
     gatcctaatt ctttctacgg aaatattgta acaaaactcg gattgcaaaa cactcgagca      1920
     aaccgagaat atctacgtga atttgtgaag acgtcatatc tggtacaaaa atttaatatt      1980
     ataaaaacaa aacaagtatt attctaaaga tttggttatt gtgaaacttc tacaggaatt      2040
     tcttcaaaga aaaacacatc aagaaatcct gacatcattt agcttgtctg ataaccacaa      2100
     cgtacatgct aaacatggaa cctcactata tggggacgtg gctttgagat taaaccttcc      2160
     taacatcgat gtagttcgct tcagcctgtc caggtggagt aaacattttt ctaattttgt      2220
     ggggacgact gggaatgaaa gaaagggaag acgaaacgag cccattacaa gacgccctcc      2280
     acgtaaacga ccccaccttg acatcgaaga tatcccttcc tcatcaatgc tgcaattttg      2340
     tacaatagaa ttccatacag cagttcatca gtatccagag aaagtttgtg acctgtgcca      2400
     tcgcatgcag tatacattga aagctctctc aactgctgga ttaaactttt tgcacgaaca      2460
     ctttgattgt attcctatac atcttcattt atgccaaaga tgccatcgag cagcaaagaa      2520
     gaaaaatatc ccacctcaag ccttcttcaa tggaatgaaa caggaaacaa taccagaagt      2580
     gattaagtgc ctatcgcctc ctgaatttca actcatttct caagtccggc catttatgaa      2640
     gatattttat ctcagcaaag gacgaggaca gcaagcaata aagggttcag ccattcattt      2700
     tccaaactcc ttgaaagaaa tatgccaaga acttcctcta cccaattcca gtwcagagtt      2760
     tgtggtcgtc catgaaaaaa ttgaaggaat tcaaaatcag catgacttca gagttcgccc      2820
     atctgccgtt ttgaaagccc tgcaatggtt gaaacaaaac aattggctgt atagaaatgt      2880
     tgccatatgt gagagggatg agagtgcaat tcagccagta ataatcgaag cttcagttac      2940
     tcaagcaatg gtgccamaca agaatatacc agttactatg cttacgtact cgaatttagg      3000
     acaaaacagg cgaattctcc gagcgtcttg caaccaagca tcacatggta gatttaatga      3060
     agctggccga ggsaagcaat gcactgcaat gtccatgacg agcttggcct actcttgcat      3120
     tcaaaatcca tcgacttgga ccacagatac cctagatgat attctccttc gtggcgacaa      3180
     gttataccaw gaaaaagcca ctcgcggaga attccttaca gcttttgaag cccagggaca      3240
     aattgataac atatttggag cattgactgt ggcagttgct attgatgaat cggatgcaag      3300
     aagtctcaat ggacaactca atcgtctggc tagacaattg agttcgcaag ttctccgcct      3360
     tgatgcagca ttgagaaact tcatagaatc tgaatacacc actgcaatac ttactgttgg      3420
     atcgtattca atggctatca tgaagtacgt aggaaatgtt tatctgttcg acagtcattc      3480
     aaggggaccg catggacggg ttgctgtcaa tggcttagca tgcattatcg aattcgaaat      3540
     atcatttgca gcagctgaaa tttccaaact tgtgcataga aatctggagc ccaaacatga      3600
     tccaaaaagt cagaacactg ctaattatct attcaatatc actccagtaa ttacagtaac      3660
     agagtatcga agagaagaag aagaagctgt tgtctccacc agtcataatt caagacattc      3720
     aaatcctgca cctgccacgt ctcaagacac tggtgaccga ttcagtgatt tactgcacga      3780
     agctcaagca tttggggaaa acgttatggt ggattcattg ctgcacaatg ttgacttcag      3840
     tgttcctgat attggagaaa ttgttacttc ctccaaggca caaaatacac catcacttct      3900
     tatcgaaaag gagaaaggtc gccccctata ccctaatcat gaagcgtttc tagaagaatt      3960
     aagttttgtc aacctctttc cctttgggcg cggaggcgtt tcttctgtta gacctgtcca      4020
     aatcacacca ctcgactatt tccaagcmcg agttatgtcc aatgacacac gattttggga      4080
     taatagttat ctcttttacg ccctcaatag aatggaagag cacaaagtga aacaaaagat      4140
     tgcagtatgc gggcaaatgc gaaccagtag taatggcgta caaaattatg atgaatatcc      4200
     tggattgaca aacgttcacc tgtacatgtc tgctatacgt ggaggtgcat cgtactggaa      4260
     atcttacaaa ggagacctca tcgcaatgat tgctcagcga ggcattccca acatattttt      4320
     aactgtatca tcggatgatc taaattccac tgactctatt tgcgggcttc tacttgctga      4380
     tgccatgcga ggaaattgta acgccgattt aatcacacaa attcggcaga atttagaatc      4440
     tcgtaattat gcggagttgg agaaaattgt taacacgctt agttatgaac agaaatcaga      4500
     tctgcttaat cggcatccag ttcagtctgc tcggcatttc agtcatcgaa tcaacaattt      4560
     gatgacactt ttacgaaaat gtgggaaaga gatttttggg cacgaagttg acgatcacag      4620
     ttatcggatt gaatttcaaa atcgaggatc tgctcatata catatgctgc tctggcttaa      4680
     agacgcccca cgcgattatc actctactga gggcaaaaga cttattgagt caaacatgtc      4740
     ctgctccatt cctgaggatg acgaacaatt aaagtcgtta gtattgaagt atcagcaaca      4800
     ccgtcatacc aagacttgct tcccacgtac gcagtattgc agattcgact ttcctagaaa      4860
     ggtgtcaaag gaaaccgtca tacttgagga agatgacatt aaccgtaaca agggccggtt      4920
     ttgtattctg aagcggaatg aaaatgaaac ttacatcaac aattaccacc ctatcctttt      4980
     gaaaattttg aagtgcaaca tggatataca gctcgtcacg gacgcaaatg ctatagcatt      5040
     ttatattgcc aaatacatca gcaaggccga gcccacagac atccaagacg aaattcagat      5100
     aattatgcaa cagctccaat cgaactcgaa ggcctcatat tatcagatgg caactagtat      5160
     tgcgatgaag ataatgaaca aaagacaagt tagtgcaccc gaagcggcgt accggttatg      5220
     tcatcttaag ctgcgtcaca gttcaagagg atttgtcttt atccctgcat acttgcctaa      5280
     caaaagatta catttaattc agaaagaatc aataggaaat gcgaatgtga aaatagggct      5340
     aagtattatt gacaaatatt gcctccgtcc aacgaatttg gccgatattt gcttgctgga      5400
     gttcgcagcc aaatacattg cagctaagag agacgaaact gaagcagatt tacaagaagg      5460
     aaatgaggag gaagaagaag aatttgaagg acacactatt cgtttaaata atggaacagt      5520
     catgaagatc agaaaaaggc cagctattgt aaagtatcct aactttgatg cccttagtca      5580
     atcagaagat tactattact gcatgatgct cctgtactat ccatttattg acgaaaatgc      5640
     tatcacgagt ggctttcaaa caataattga tgcatttaaa gaaagatcag gtsaatttag      5700
     gaattctact catgctgatt tccttcgccc aacccttgca caagagattg acagagctct      5760
     gattagaata caaaattttg aagagccaat gacaccgcta attgatggag aaaattacgt      5820
     tccttacgag tttgaagatg aggataacaa tggtccagag aatgaaatat ttcagccgat      5880
     aaatgatgta ggaaatttgc aagaacgatt ccatacgctg tcagaagagc agaaagaagt      5940
     gtttttgaaa gttaaaagct acttggatgg agccgacctt ggcaaaatga ttgctgctat      6000
     ctctggatct ggaggaacag gcaaaagcta tttgatagac actcttgcgt cattaatttc      6060
     ttcctattgc cttaacggtc acaacctact aaaagcagcg cctactggaa tgagcgcgtt      6120
     aaatattaat gcaaccacta tccatagagc cttcaaactt ccagtacaga ggggattcat      6180
     tccagcatac gtcccattaa aaagcaagca agttgaagag ttacgggtta atttgaggca      6240
     gttgaaatgg ataatcatag atgaggtgtc aatggtatcg tatcaaagcc taaggatgat      6300
     tcatttgcgt ctttgtgaaa taaccaacaa tgatgagccc tttggaggat tgaatatttt      6360
     agtattggga gatcttatgc aatttcgacc cattaatgct tcttggatat ttaagccgcc      6420
     aagcacctac ctccatgaag tgaatctttg gaagttgttt agtttctacg aacttttcac      6480
     caaccaccgg caaactggag acacgcggta cttacaactc ttagagcgac tgaggtttgg      6540
     acagtgcact caggaggatt taggccttct tcaagcccga atttttgact tggaagattc      6600
     tgagttgttt gcaaagttct cggatgcctt ggcacttttt cctacaaaca cggatgtcaa      6660
     caaatttaac gagaagcaga cagagaaatt gaaagaccaa ttatcaaaag tcaataagaa      6720
     aacctacata atgagggcaa aagatacata tgccgcagga gttcattacg atgagccgtg      6780
     ccctgaaaat ttgattccca aggaagaaag actcactgct gggattccaa ccactattga      6840
     gattggtgtt gggagtcgaa ttatgcttcg ccgtaattgg agtctatctg atggtaaatt      6900
     ttctataaag tttccttgta aaaaaaatta agcatattgt ggattgcagg actagttaat      6960
     gggagtgttg gaacagtggt cggtatcaag tggactgctc ttagagatga acctcttcag      7020
     cctggagatc taccgcaatt tctgattgtt cgatttgatg gggggatggg aggacgtaag      7080
     aaggacatta atggatatgt accggtagaa tgttcgactt ttgaattccc tggtatggtt      7140
     ataaaacaaa tgttcaaggc atatataagt gcaaggtact ttactaaaaa attaaaatct      7200
     tgctatccag gaaaaaggca gacgttaatt aagaggaggg ccttcgctgt gatattgtgc      7260
     tgggcgctag tttttcataa aacacaggga ttaactcttc acttcgccag tattgattta      7320
     tcgaaacgcc agtttgctaa agcgatgggg tatgttgcct tgagccgact caagtcttct      7380
     agtggattgc gcataatcgg cgtgaatgag acaaatattt tgacgctcaa gaaaaatgcc      7440
     gccccatgtg acgaagacgc actcagagaa ctatatcgac tccgattaat gaagattcaa      7500
     gttgacgaga atgaaattca cgatttgtta aactgggtgt gtgaataccc ggtatgtttg      7560
     atttgtaaaa aatggatctg cggatgtgta tgtatataag tttatatcat tttttttaca      7620
     taatttatga tcttgacaag acagaaacag ttttatatgt aacgtgtttt gagaatgtca      7680
     tgatgtatta aaagtcactc gattaaaagt attaaataaa caaggtccca aaaaagggga      7740
     aatcttagtg agacacgcgt gcaataacaa ggaataaata aaacttccgg tgtcacattt      7800
     gcatcacctc tcccggaaca attgattgca tgagcattaa gtttggaagg aacggaattg      7860
     catcccagct ctaataaatc tttcggaata tgcatgccaa ttgatgaaat tctatggtta      7920
     caattgacaa attttggtaa acaacaaaac ttacaaacaa acaacaaact tcgggcaaca      7980
     cccgaaattt taaaaactca gcgagatttg cgaaagaagc accatgtcga gccaatctca      8040
     agcctctaca gtttgctatg acgaggagga ggaactagtc aaagaacaag ttgggcttat      8100
     tcgaaagctt tatgaggcga acaagcgtgc acgcattctc gaggtcgaga atggaacatt      8160
     gcggtcaaaa ctttgggttt tggaaagttc agttgaacaa gcagctttct tagacgtttg      8220
     caagaaggta aataagaaat aaatatataa gaagcattgc atggaaaaag taatgttata      8280
     ttttaatcag ttgaaggacg cggaggaaga aatcgcccga ttacgagccg agaaggagga      8340
     acttagaaaa attaccgacg ctaggcagac aaaacttttc cacagaattc ttgcagaaaa      8400
     agtcagcaga aaatattttg caaatgatgc caagaatgaa tacgctcaaa agaagaaagt      8460
     gaatttacag ttatcaagac aggaacggat ggcaaaagtt tgggagcaac gagcgagatt      8520
     gaaaaatact gagctgcgtc aagttaaaaa aattaatgcc agaaatgaag aaaatctgtt      8580
     aactgaacca atcaatgtag aaactgttca gttccatgtt cacgaaaaat ctgcacataa      8640
     tttagatcca tcaaacatag agcagaggtt atgtgcatgc ggtaagcaga tggaagaaac      8700
     cggaacaaag gtggcaaaga ggaaggaacg gaggaggaag gccaagtttt attcaaaatg      8760
     tgaagatgat agaaaatctt tctgtcgaat ttgttataga agtttgtgat ttctttcgga      8820
     agtaattgtt gagttcggtc agtaaggtcg taattgtatg tattagctca ttaggtcaaa      8880
     taaccccaaa atttacacat tttgcaataa atttattggc gttgtgctgc aattccgttc      8940
     atgccaaact taatgttcat gcaataaatt gttccgggag aggtgatgca aatgtgacac      9000
     cggaagtttt atttattcct tgttattgca cgcgtgtctc actaagattt cccctttttt      9060
     gggaccttgt ttat                                                        9074
//
ID   Helitron-5_NVi repbase;    DNA;    INV; 5915 BP.
XX
AC   .
XX
DT   16-APR-2009 (Rel. 14.04, Created)
DT   16-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-5_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5915
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 766-766 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus may be incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           1357..5610
FT                 /product="Helitron-5_NVi_1p"
FT                 /translation="MPRRRVVRTQEEEEIFQENRRERRAESQRRRRQAERN
FT                 AIIDESRNEPVLRDHLGPMNISCTHCRAQHFIGEKVSNKGFSFNDCCSHGA
FT                 VHLEPTPVFPTVLNDLFNGSHAKSNDFFQHIRVYNNSLSFASFNANLVNFA
FT                 SRRSGPYCFKIQGQIYYQINTALYPEDNDSPSYGQLFIIDPLEAIYLRMEQ
FT                 NSDLQYETLEILDKVIRENNIFAKSYEMMKQEINNQQTLINSDEPVPELQL
FT                 LFALKPGTDARRYNFQRTNEVAAVFSTTADGDIPESYVTIRNKNTKTLQYV
FT                 STMDPNVEPWIYPLFYPYGNQGWHQNLQCINRNNAGGNNRRVTRLAYTRYK
FT                 IAIRPDEFNPFILGRRLFQQYVVDAYVKIEKDRIMYCKNHQKEIKADTYQG
FT                 LHDYMQNSANDINGQVGKTIILPSTFIGSPRHMQQCYQDAMALINRKGKPD
FT                 IFLTMTCNPKWPEIVENLLPHQQASDRPDIVARVFHLKKERLLDFIIKKNF
FT                 FGEVAAYVYVIEFQKRGLPHMHLLITLAYGSKITTSEIVDKFISAEIPDAQ
FT                 NPTLQEIVLKNMIHGPCGSWCQVDGKCSKKFPKHFVNETNMDENGYPNYRR
FT                 RNTGILHKQTNGNEVDNRWVVPYCPILLEKFNCHINVEVVTSIRSVKYLYK
FT                 YIYKGHDAATVTIGESNEGTLINHDEIRDFLEARYVGPVEAFYRILSKILQ
FT                 DKSHAIIRLPLHLPYQHTVTINGKGNITQENLSSSSSMLLDYFKLNLENPE
FT                 ARQYFYADIPSKFVHKKSKIDGLSVSSWQVRKQRFNCIGRMYSISPTQLEL
FT                 FHLRLLLLHVKGATSFDYLKTVDGILHPTFTAACLALGLIEDDEEWIRAME
FT                 EATVWMMPAQLRRLFVRILIHCQPVHPEELWDKFKDAMSEDFSRTNELTIS
FT                 HQKAYAHINNLLNMEGRXLSDFPTMEQTVELNISYDETDEATLPQMAELGQ
FT                 QQYENLNNEQKEIVDTVLHAVDLNDHDRNNCIYIDGPGGSGKTFIYTTLYN
FT                 LLSSKNIKVCTMAFTGIAATLLPHGKTVHKTFGLPVPMYHDSSSSIKAQSK
FT                 EGLFLKNADVFIWDEAPMAPRYALEIANRTLQHIMNNNLPFGGKIIILGGD
FT                 FRQLLPIKIRGTRCETLNLCIKYSELWKYFKKFTLTTNMRVRPNEINFAKY
FT                 LLEVGNGTINDLHDNIDXPEHCILDANNNIAYYSFGKLIEEKRFEDMSKCA
FT                 ILSARNIDVDEINKQVTNLLDVTSEHVYTAIDSTENCNNGELDEVLLPEYL
FT                 NSLNPTSLPPYELRLRKHCIVMLIRNISINEGLCNGTRLRIIDFSNHLLKC
FT                 IILTGDKAGRIVFINRITLYCENDYPFTFKRKQFPIKIAFAMTINKSQGQT
FT                 FHKITIDLRANVFNHGQLYVAMSRVRSWDSVKIYLGRQRQGVQVKNYVYKE
FT                 LYL*"
XX
SQ   Sequence 5915 BP; 2188 A; 887 C; 889 G; 1949 T; 2 other;
     caagtaatca tattatatcc aaaatattgt tttgactcat ttaaaaaata tcaatgctag        60
     agggttagaa ttttgcatag taatttgttt tcacttacta catcaataaa tcaagttatc       120
     attattgtaa gtgatataat tttgattagt ttatcagtac ctgtatgaca attttgacgt       180
     taaagccatt gagttcaatg tgtcagtatg aaccaagaca attaaataga aactgccgtc       240
     gtagcctaat tctacacaat tttgcaagtt tctgagcaaa gacacagatg tctaacttta       300
     atagagctga tgtaatacca ttcaagctcg aatattgact atgactggat ctattcactc       360
     ataatagtca atattcacac tttcagagat tctctggcta tcttggacac acaaatatta       420
     tcatctgcat tatataatgt ttcgcaaaag aaaaatcaca tcagaaatca gaaaagatac       480
     atcagaatag taaacttcac agagccctga gtgtgcggct attaatttac atacatgtag       540
     gatcaggttg ccaattttaa cacatacttc tttaaaatac aacaaaacgt gtgactttat       600
     gtagaatcta actaattcta atttttatta gattaattta aagctaagaa tacatatatt       660
     ttgtttcaag atttgaaaat attaaagtat aacagaaaaa ttaataatgt atgcgattca       720
     caattatgta acctcggtat ttatattttt tattgaacat tgacaattat aactattttt       780
     aatttttgtt tgtttcaggt tttctaggat acatttgaag ctgttacaac acttacttct       840
     ttgtttacta ttatttaatt aaaaaaaatg taaacatttt ttgtatcatt aattttttat       900
     taaagataaa gacaaatcat ttataataat attgtgtcaa aatttattta cgtctaacct       960
     attacaataa cttaagacct cctattacac cttcacatct tcaacacttg aacttaaaaa      1020
     aatttaattt gaaaacttga acttgaaaat ttgaacttca taacttgaac ttgaaaactt      1080
     aaacttgaca acttgaattt gtaaactgaa acttaaaaca ttacaattta ctaaaactga      1140
     aaataaactt tgatcaaaaa ctaatcttca aattgcaaat aactttcaac tgaaaatatt      1200
     acttacgaac taaaattatt aataaaattt ataaatagaa tcttattttt caaattatat      1260
     ttcattacct ttatacttat tttgtatttc ttattttagc aactttgtat taatttaact      1320
     aaatttctat caaatattaa taattaattt acaacaatgc ctcgccgaag agtagttcgt      1380
     acacaagaag aagaagaaat atttcaagaa aatagacgag aaagaagagc tgaatcccaa      1440
     agacgtagac gacaggctga acgtaatgct attattgatg aatccagaaa tgaacctgta      1500
     ctccgggatc atttaggacc aatgaatatt tcatgcacac attgtagagc acagcatttt      1560
     attggagaaa aagtatcaaa taaaggattt tcttttaatg attgctgtag tcatggggca      1620
     gttcatttag aacctacacc tgtatttcct acagttctca atgatttgtt taatggatct      1680
     catgctaaat cgaatgactt ttttcaacat atacgtgtct acaataattc attgtccttt      1740
     gcttctttca atgctaactt agttaatttt gcttcaagac gttcaggacc atattgtttc      1800
     aaaattcaag gacaaatata ttatcagatt aacactgccc tatatccaga agacaatgac      1860
     agtccatctt atggacaact tttcattatt gatccactag aagctatata tttaagaatg      1920
     gaacaaaatt ctgatcttca gtatgaaaca ttagaaattt tagataaagt aataagagaa      1980
     aataatatct ttgctaaatc atacgaaatg atgaaacaag aaataaataa tcaacaaacc      2040
     ttaataaact ctgatgaacc agtaccagaa ttacaattat tatttgcatt aaaaccagga      2100
     actgatgcac gaagatacaa ttttcagcga accaatgaag tagctgctgt tttttctaca      2160
     acagctgatg gcgacattcc agagtcttac gtaactattc gaaacaaaaa tacaaaaact      2220
     ttacaatatg taagtacaat ggatccaaat gtagaaccat ggatttatcc attattttat      2280
     ccttacggca atcaaggatg gcatcaaaat ttacagtgta taaatagaaa taacgctggt      2340
     ggtaataatc gacgtgtgac ccgtttagct tacacaagat ataaaatagc tattagacca      2400
     gatgaattta atccttttat tttgggacgt cgattatttc aacagtatgt tgtagatgct      2460
     tatgtcaaaa ttgaaaaaga tagaattatg tattgcaaaa atcatcaaaa agaaattaag      2520
     gcagatacat atcaaggatt acatgattac atgcaaaatt cggctaatga tattaatgga      2580
     caagttggaa aaacaataat tcttccatca acattcattg gttcacctcg ccacatgcaa      2640
     caatgttatc aagatgcaat ggccttaatt aatcggaaag gtaaacctga tatctttctt      2700
     acaatgacat gtaatcccaa atggccagag atagtagaaa atcttttacc tcatcaacag      2760
     gcttctgata gaccagatat tgtagcccga gtatttcatt taaagaaaga acgtttatta      2820
     gattttatta tcaaaaagaa tttttttggc gaagtcgcag catatgtata tgtaattgaa      2880
     tttcaaaaga gaggtctacc ccacatgcac ttattgataa ctttagctta tggttctaaa      2940
     ataaccactt cagagattgt tgataaattt atttctgctg aaattcctga tgcacaaaat      3000
     ccaacattgc aagaaattgt tttgaaaaat atgatacatg gtccatgcgg tagttggtgt      3060
     caagtagatg gaaagtgttc caaaaaattt cctaaacatt ttgtaaacga aacaaacatg      3120
     gatgaaaatg gttatcctaa ttatcgcagg agaaatactg gaattttaca taagcagact      3180
     aatggtaatg aagtcgataa tagatgggtc gtaccatatt gtcctatttt attagaaaaa      3240
     tttaactgtc atattaatgt agaagtagtt acaagtatta gatccgttaa atatttatat      3300
     aaatatattt ataaaggtca tgacgctgct actgtaacaa ttggtgaatc taatgaagga      3360
     acattaatta accacgatga aattagagat tttctagaag ctcgatacgt tggacctgtt      3420
     gaagcatttt accgcatact tagtaaaata ttacaagata aaagtcatgc tataataaga      3480
     ttgccattac atttaccgta tcaacatact gttacgataa atggcaaagg aaatattaca      3540
     caagaaaatt taagttcttc aagtagcatg ttactagatt attttaaatt aaatttagaa      3600
     aatccagaag caagacagta tttttatgca gatattccta gcaaatttgt tcataaaaaa      3660
     tctaaaattg atggtttatc ggtttcaagt tggcaagtcc gtaaacaacg ttttaattgt      3720
     attggacgta tgtattcaat tagtccaact caattagaac tatttcattt gcgtctattg      3780
     ttattgcatg ttaaaggtgc tacaagtttt gattatttga aaactgttga tggtatccta      3840
     caccctacat ttacagcggc atgtttagct ttgggtctta tagaagacga tgaagaatgg      3900
     attagagcca tggaggaagc aaccgtgtgg atgatgcctg cgcaacttcg acgattgttt      3960
     gttcgtattt tgatccattg ccaacctgtt caccctgaag aattatggga taaattcaaa      4020
     gatgcaatgt ctgaagattt ttcacgaaca aatgaattaa ctataagtca ccaaaaagct      4080
     tatgctcata ttaataactt attaaatatg gaaggtagar ctttaagtga ttttcctacg      4140
     atggagcaaa cagtcgaact aaatatatca tatgatgaaa ctgatgaagc aactttgcca      4200
     caaatggcag aacttggtca acagcagtat gagaacttaa ataatgaaca aaaggaaatc      4260
     gtagatacag ttcttcatgc agttgatctt aatgatcatg atagaaataa ttgcatatat      4320
     atagatggtc caggaggatc tggaaaaact tttatttaca ctactctgta caatttatta      4380
     tcatcaaaaa atattaaagt atgtacaatg gcatttactg gtattgctgc aacattactc      4440
     ccgcatggaa agacagtaca caaaacgttt ggcttgccag ttcctatgta tcacgattca      4500
     tcatcaagta ttaaagcgca atcaaaagaa gggctatttt taaaaaatgc cgatgtgttt      4560
     atctgggatg aagctccaat ggctccaaga tatgctttag aaattgcaaa tcgaacattg      4620
     caacatatca tgaacaataa tttgccattt ggaggaaaaa ttattatact aggaggagat      4680
     tttcgacaac ttcttccaat taaaattaga ggaactagat gtgaaactct gaatctttgc      4740
     attaaataca gcgaattatg gaaatatttt aaaaagttta ctcttaccac aaatatgaga      4800
     gtaaggccaa atgaaattaa ttttgctaaa tatttattag aagttggtaa cggaacaata      4860
     aatgatttac atgacaacat tgatsttcct gaacattgca ttcttgatgc aaataataac      4920
     attgcttact attcattcgg taaattgatt gaagaaaaac gatttgaaga tatgagtaaa      4980
     tgtgctatac tgtcagctcg aaacattgat gttgatgaaa tcaacaaaca agtcacaaat      5040
     ctattggatg taacgagtga acatgtatat acggctatcg acagtacaga aaattgtaat      5100
     aacggtgaat tagatgaagt gcttttgcca gaatacttga attctctaaa tccaacaagt      5160
     ctacctcctt atgagttgcg cttaagaaaa cattgtattg taatgcttat tagaaatata      5220
     agtattaatg aaggtctatg taacggtaca cgattaagaa taatagattt ttctaatcat      5280
     ttattgaaat gtataatttt aactggcgac aaagctggac gtatcgtttt cataaaccga      5340
     attacattgt actgtgaaaa tgactatcct tttacattta aaagaaaaca atttcctata      5400
     aaaatagctt ttgcaatgac catcaataaa tcacaaggcc aaacatttca taaaattact      5460
     atagacctgc gagcaaatgt ttttaatcac ggtcagcttt atgtagctat gtccagagtt      5520
     agatcttggg attctgttaa aatatatctt ggaagacaaa gacaaggagt acaagtaaaa      5580
     aattacgtat ataaagaatt atatctataa cttcctttaa gacaaatttt tttgtcatta      5640
     caaaaatttt aataaatatg cttacaattt gttttacttt ttcaatgata ggcattaatg      5700
     agtattttat tgcataatta tttatacaga gttacaactt caagatttaa tacgtgaaat      5760
     aattaaatat aattatatct attgtcttta ttattttaaa ttatctacgc actgaaaatg      5820
     ttctgttttc atgattgata tatgtttata tccaaaactt aaacatgccg cgcgcaacgc      5880
     gcgcgctaaa ttcctagtga atcataaaaa ctgag                                 5915
//
ID   Helitron-6_DRh repbase;    DNA;    INV; 6534 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-6_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-6534
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1392-1392 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 6534 BP; 2071 A; 1284 C; 1306 G; 1858 T; 15 other;
     tttttgkatt cwtawktttt aagattgtat acaaatcata wagatctcgc aaataagatc        60
     ggcatactga cataatcttt tcctttcaac agattcccag attgcagatt cagttatttt       120
     tttattktaa atatgcaaaa catctktcat ccattttaca aaggtctttt ttatattaaa       180
     gtttgatacc ccacgactgg ttaagggttt ctctgatagw tttattttat atttatttgt       240
     aaccctacat wctamaactt ttacaaatat tgacgaacac tatgcaggct atgaataata       300
     cagaaatacc agcctttata ttgacacgta tgcctaatcc atggattagt ctgtaaataa       360
     cagtcgccgt ataacaacst gttctgtgta agccagtatt acttttattg tgtacttttt       420
     gttattcaaa agtgaaaaat taaattaaaa gtgcgtaaag tgatttaaag tgatatctcc       480
     tacaattgat aattggtaag tttccgttta tttgtcaaag ttgtccgaat tttctgtctc       540
     cctttgctgt tttaatacac attatatttt tcacaattta ataataacaa ttgcagtatt       600
     ttgtctattt atcagaaaat tataaaatta tgtatgtatc aaccttaaac caaatacggg       660
     gcttaagatt gaagcataca taaatttatc atagtattag acacatttca aaattccctg       720
     ttaaaacttt taaaacaaac acgtattatc ctttaatttt atttatacga ttttttaaac       780
     aggaaaataa agagaatgcc acgcgtatct wctttatctc aggaacaacg ccgccaagcc       840
     gcactaaggc gcagccgagc ccaatatcgt caaaatgcac cgcagataag gacccgcaat       900
     gccctgcata ttgccgagct acctggaggg ccgmtgaaga aaatcgcaag ccagggaacg       960
     agaacaggac gctgcagcgc acgctcttgc cagggctaac tccgaggagc gccgacgaca      1020
     gcagtcgcaa aatactgcta atcgcgctac ctggagggcs gatgaagaaa atcgcaggcc      1080
     agagcgagaa caggacgcta tagccacgct cttgccaggg ctaactccga ggagcgccga      1140
     cgacagcagt cgcaaaatac tgctaatcgc gctacctgga gggccgatga agaaaatcgc      1200
     agaccagagc gcgtaaggga cgctgatgct cacaggatcg ttaggaataa ccccataact      1260
     cgtgcgcatc agcagcacta taacacattg cgtagtcggg agacacgcct acagcggaga      1320
     cttcgagagc aacaaattca ggaaatggcc gcggaaagac tattcacata taggagcagt      1380
     acccaaaatc gtcaggcgga atctttaagg cagtcgcagc gaaatattgc tgctagagct      1440
     gaactttccg cagatgaaag ggaggatcaa cgggaactac agcgccggag gagccgaaac      1500
     actgcgcggg aacaatatct tcgaaacatt aaggacggac caacaaaaat atgtacatgc      1560
     tgtggaggaa catggtttcc atcccaggta agtggtttga atcaatttct tatatcttct      1620
     aagttcccca atatgaacgt aggcaactca ttttatttaa gtaggaaatt tccgagtccg      1680
     tccggtatat atctattctg cagtacatgc cgtcaagctg tttccaaagg tagactacca      1740
     tctctttgtc tttccaatgg cttagacttc ccagaaattc cggagtgcct taaaaactta      1800
     acgtgtctgg aagagcgcct tatttctcct cgaattccgt ttatgcgcat tatctcccta      1860
     ggatatgaaa ggcaatgcgg aataagagga gcggtggtaa atgttcctat ttctgtccca      1920
     gacactgtaa gtgcgcttcc ccgatccttt aattccacac atgtaatcca agttcacctt      1980
     aaaaggaaac tggaatactc ccataacttt atgacagaaa ctattcgacc cgctcgggtc      2040
     cttgaagctg tacggtactt agttaacact gaactgtaca gaaaacacaa tatcattttt      2100
     gataatgact ggcttaacca agtgggcgat agggaagaat taccttttat cgcagatgaa      2160
     tctgaccgag aagaagttga acagctattg cgacaacagc tttattctca acaaatccat      2220
     caacaagaag aagagctaaa tccaggcggt catgaaactt tattagaaaa taacaatact      2280
     gagctcgaac gtattgcttt ggcccctggg gaaaagtcct ttatatgtac aagttttatg      2340
     agatgcagcg aattcaaaac acaatttcca ttgccctacg aaaaaagtca ggtgcggtaa      2400
     ctgctgcaaa tataagggat gaatcgtttg ttgacagact tgtacagcat gacgacgggt      2460
     atcatattct gaaaggtcta cgttccgccc cagctcattg ggaggctgaa aaaaaagtta      2520
     tagccatgat aagacaattt gggttgccta catttttcat aactctttcc gctgctgaat      2580
     ctagatggaa tgagctgtta gttattattt ctcttttgkt ggatggcaaa aatataaatg      2640
     aggacgaagc ggcagctctt tcgagtaccg aaaaagctcg cttaatccga tctgacccag      2700
     taacatgctc ccgttacttt gactacaggc tccgacaatt gctgaaagtt ttcaaaagtt      2760
     ccgagatatt tggcgaatat accctagtcc actattattg gaggatcgag tttcagcaca      2820
     ggggatcgcc acactctcat gaattcattc aataccagcg ccgtaagcac agctcttcgt      2880
     gtttaagaga gctgcgtggc caggaattct gccgcttcaa tatgccatac cctccaatgc      2940
     ctgaaacatt ggttttatat ccattagaag aaaacgaaac caatgttgaa cattctaaag      3000
     aattgtttaa aaaaattaaa gagcttttaa agtctagttc cgatgaagaa gcaggcactt      3060
     ttaataattt taaccttttc ctggcccacc ttgaaactac atttgaagaa tataagtttg      3120
     ccattcgctc cagcctaaaa aaacctcaga tatttcttcg tcgcaaattt tccgacaggt      3180
     tgttaaatgc ttacaacaaa aatattttgg gcttacatag ggcaaacatg gatattcaat      3240
     ttatcctaga tgcgtacgcg tgttgtagtt atatagttaa ctacattaac aaatccaacc      3300
     gtggagtgtc gcaactcctt cgcgaagcaa tgactgaaat aagtcacgga aatatttcag      3360
     ttaaaagaaa actgcagcat ctcgggagca agttcattaa cgctacagag atttctgccc      3420
     aagaagcagc ctacaacatt ttaggattac acatgtcaga ggctagcgaa ggaaatattt      3480
     ttgttaacac ttgccatcca gataaaagag tgcggatagt gcgatctaat agggaaatag      3540
     aacagcttcc tgaaaactcc actgatatct ttgagaaaaa cttacttgat cggtatgtac      3600
     aaaggcatga acaattagag tcaatatgtc ttgcagaatt tgcggcttgg tacaaattcg      3660
     gcaagtcaaa ctctcgaaca gaaaggtcca acgaagatta tgatgaaccg atcgacttgg      3720
     aaccagatga tgaaaacgcc attgctgaac aatgtttcgc acttctagat gggactggta      3780
     gtgtgaaaag gcgtaagcat gccttaattc ttagatgggt tcgctttagc ttaaactctt      3840
     ccccatctga ttattttaga gagcatgtaa tgcttttctt cccgtggagg agtgaggagt      3900
     cggaacttat ttcaaatgac aatgaaagaa cattcaggaa taattttgaa ataatcaagg      3960
     ccaacaaaga gcaatatgat gtgtttgatg atatggaatt ggagagggtt cttcaagact      4020
     tgcaaaattt tgatagagaa ccaaacagtc ctcttgctga ggggcttgcc tcccaatacc      4080
     tagatgaaga gtttagagcc ttggcagtac caaacgttgg gcaaaacgta aatgtactcc      4140
     aagatgacat tgaaaataac ccagaggatg gagaacttca acttattaga cttcctcctt      4200
     tggtatctga agacacactt tgctccctta ctaggtcgct taactttaag caacgccagt      4260
     attacgccca tgtaatgcat aatgttgcag caaagaaaat tttttatgaa tatgttggtg      4320
     gaggtgctgg agtcggaaaa agtaggctga tttcaacaat atatcagtct ataacgtggc      4380
     gggcgaataa gcttcctggg gcaactgatt ctgcaaaggt tttactttgt gctcctactg      4440
     gaaaagctgc ttttgggatt ggaggactta cgcttcattc tgttttctcc cttcctgtta      4500
     atcaatcttc gggtccctta agacccttaa gtaatgactc tttaaacact atgcattgta      4560
     agttaattga catccaatta attattatag atgaaatttc catggtcgga tcgaaaatgc      4620
     ttgggtattt agatcaaaga cttcgacaaa tttttagaac tcaagatcta atttttggtg      4680
     gaaaatcaat aatagtgttt ggagatctga agcagcttag cccagttggg gatcggtgga      4740
     tattcctaga aaatagtaat aacccctata acattcttgc cggagctaac ctttggaata      4800
     attttaagtt ttttgagtta acgaaataat gagacagcgc gacgatcacg cgtttgcttt      4860
     ggcattaaat aatatgtccg aggccaatat gacagacgca gatgtagagc ttcttaggca      4920
     aagagttgtt tcacccaccg aggttgctga tgacgcaatt catttgttct gctctaatga      4980
     tgaggttgcc cattataata cctttaagct tgcccaaatt cagactgaag agttttttca      5040
     actgccatag atactgttaa atcagcaaat atgtcagaaa gcaatagagt caggacgtta      5100
     agaatggccc aaaatatgaa aacctcagaa acccagggct tagcatatat tcttcagcta      5160
     aaaacaacgg caaagtatat ggttaccgtc aatatagaca caaatgacgg actagtaaat      5220
     ggtgcaactg gccaattaat gcaaattgac cattgcatgg ttaacggctc ccctatagtt      5280
     acaggactgt ggattaagtt ttcagatcct acggttgggg ccatagccag gtcaaaagtt      5340
     cgaaggaatg ataatcccgg ttggactccc attcagaaaa cagcccgagt ttttcagtgc      5400
     ggaaattcag gacattcttc gattgatcgt aagcaattcc cagttgttcc tgctgaggct      5460
     attaccatcc acaaaagcca aggagcaacc tacagcaaag tcgcagtgca tcttaaaaga      5520
     ggcattaagc gagcttcgct ttacgtagga tgcagcaggg caacatgcgc atcgggtctt      5580
     ttccttttag gagactttgt tcctccaact agatttggag caacaaatgt ccaagaagaa      5640
     cttcaatgtt taagagggga aaaggctttg actacgcaat acgaattctt ggtcaataga      5700
     aatgatgcca tctcattgta ttaccacaat gttgagtctc ttcgtgctca tcacgaagat      5760
     attgccaacg acaaaattat ttgttccgca aactttttat gttttgttga aacctggact      5820
     cttccacatg aggagtataa taagggcggg aggggccgtt gaatggcttg ggaagaacgg      5880
     aatactcatc tatgctaagc agagtatttc gcaaaatgtt gtatttttgt tcgaaaaatc      5940
     aataagccca tgagcaccta taatcaattg catttaattg cgtcattttt aattgtatat      6000
     aggagtccta gatttcctat tacaagattt cgaatgaaat taaagctgac gtcgaaaaag      6060
     tgcgcagaat agataatatt aaagtggtaa tattaggaga ttttaatatt tgcagatcct      6120
     taagaactga ttctctggag gcaattttaa atgcgtataa cctttttgga acaaacagct      6180
     ctccaacaac aaaacacctt acgcagattg attggatatt cactgatgct cgaattccgg      6240
     aaaccctcgc cctcatatat gaaacaccat atagtcatca tgatggaatt ttcctcagtt      6300
     atagcttgta aagaaatata actattatat aataagcgct caattgtaaa taaataaaat      6360
     aaatagatat aatataaatt gtaaaaagat aattgtatat atattctaat tgtatttatc      6420
     tttattattt aagcaaatat agtttccccc tcgtggattg agaccttgtc gtggtgtggg      6480
     ggctgagtac gtgaatttcg aaataaatat cactgaaact agcaacaatc cgat            6534
//
ID   Helitron-6_NVi repbase;    DNA;    INV; 3746 BP.
XX
AC   .
XX
DT   22-APR-2009 (Rel. 14.04, Created)
DT   22-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-6_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3746
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 767-767 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..1672,1647..2159,2113..2325,2277..3386)
FT                 /product="Helitron-6_NVi_1p"
FT                 /translation="RNCKPKNIIMSITRNDELDKNRYNEVAMIFVGEDGHP
FT                 PIERDIVIYSTHDKPISIPLISKHTDPMTYPLIYPNGGYKWMPNMKCKFGK
FT                 NNISNLQFYNYRLSVRNEFNPYLNLGKVSQQAIIDAFVKVESSRLYFIRKN
FT                 QNILRSDCYKGVMDYLHKKGDAENIKIGKMFILPSNFTGSPRHLKQNYIDS
FT                 MSLVNRYGKPDLFLTMTCNPNWKEITENLQKYENSIDRPDIVAKVFQQKVK
FT                 EFKELVIKDGILEKSIAYTYVIEFQKRGLPHMHMLLFLDENYKLDTPEKVD
FT                 NLINAEIPNKNFYPRLYSIVKQFMIHGPCGVINKNSPSMDKNTEKCTKNYN
FT                 NETSFQATGYPIYKRRNDGIKINYKNKNSQRTADNRFVVPYNPFLLLKFNC
FT                 HINVEVCSTVQCIKYLFKYCYKGHDCAFVEIRNADINFEEDNNNKNQTLST
FT                 EEDEYKYDEINQYLNTRYLSPPEAMYRLLEYCLHEISHVIKRLAIHDKDQQ
FT                 YVYFEKGKEEKIKNKIIETTLTAFFKLNQTDLDARNYLYSDIPIHYTFDEK
FT                 LKTWNKRKKIKHGTKGKKYNKPILSRMYLVNPKDRERYFIRLLLLHVKGPT
FT                 SFEDLRTVNGVLYPTFYEAAIAKQLVNEDEEWDKCLQEAIQIQFPTVLCEL
FT                 FAFICIFHNPINARELYEKYKSNFYHPKYEECAGENIALNAIEKVMQANGL
FT                 TLSDFNLPNITMNIEEFDNATFLYKEKNTLKNLIMQHFCIKKKTNMLNELQ
FT                 KKIASLNINQKNIYDAVLESLNYKQDKCIFIDGPGARREWKKLFLKKVRTR
FT                 XQERVEKVILKESLNYKQDKCIFIDGPGGSGKSYLLNVLIDYLKLHNIPFL
FT                 CVAWTGIAANLLSNGRTVHTTFKLPLNINDCTTCNVKPNSVNGRKLKDVQI
FT                 IIWDEISMTSKFAFEAVDRLFQDLCDVTVIFGGKSMLVSGDFRQTLPVVRH
FT                 GSRIEVIENSVKYSYLWTNFRRMTLNQNLRVSNNDDNFKQWLLNVGDGKRL
FT                 NLYEEENELFEIPVNMISKGDIITEIFGNNIKMNDETLKDKVILAPKNNDV
FT                 IDINNKILDIMEGHFVEYLSIDTAEDDNGENLDVMLPTEFLNSLTPNGLPP
FT                 HKLKLKIGAIVILLRNLNINEGLCNGTRLIVKQFLKYSIQAEILNGKNIGK
FT                 LVLIPRITI*"
XX
SQ   Sequence 3746 BP; 1510 A; 456 C; 598 G; 1179 T; 3 other;
     aaggaattgc aaaccaaaaa atattataat gtcaattaca agaaatgatg aattagataa        60
     aaatagatat aatgaagttg caatgatatt tgttggtgaa gatggccatc caccaatcga       120
     acgtgatatt gttatatatt caacgcatga taaaccgatt agcatacctc ttataagtaa       180
     acacactgat ccaatgacat atccacttat atatccaaat ggtggttata aatggatgcc       240
     taatatgaag tgtaaatttg gtaaaaataa tatttctaat ttgcagtttt ataattatag       300
     acttagtgta agaaatgaat ttaatccgta tcttaattta ggcaaggtat ctcaacaggc       360
     aataatagat gcgtttgtta aagtagaaag ctccagatta tattttataa gaaaaaatca       420
     aaatatttta cgaagcgatt gctataaagg tgtgatggat tatttgcaca aaaaaggaga       480
     tgctgaaaat ataaaaatcg ggaaaatgtt cattttacca tcaaatttca ctggaagtcc       540
     taggcattta aaacaaaatt atattgattc tatgtcactg gttaatcgtt atggaaaacc       600
     tgatctattt ttgacgatga catgtaatcc gaattggaaa gaaattacag aaaacttaca       660
     aaaatatgaa aattcaattg atcgaccaga tattgtggct aaagtatttc aacaaaaagt       720
     gaaagaattt aaagaattag ttataaaaga tggaatttta gaaaaaagta ttgcatatac       780
     ttacgttatc gaatttcaaa aacgaggtct acctcatatg catatgttac tatttttaga       840
     tgaaaattat aaacttgata ctcctgaaaa agtagataat ttaataaatg cagaaattcc       900
     aaacaaaaat ttttatccgc gcttgtatag cattgtaaaa cagtttatga ttcatgggcc       960
     ttgtggagta ataaataaaa attctcctag tatggataaa aatacagaaa aatgtacaaa      1020
     aaattataat aatgagacaa gtttccaagc aacaggatat ccaatataca aacgaagaaa      1080
     tgatggtatt aaaattaatt ataaaaacaa aaattctcaa agaacagctg ataatcgatt      1140
     tgttgtacct tataatcctt ttttattatt aaagtttaac tgtcatatta atgtagaagt      1200
     atgttcaact gtccaatgta ttaaatactt atttaaatac tgttataaag gtcatgattg      1260
     tgcttttgtt gaaattcgta atgcagatat taattttgaa gaagataata acaataagaa      1320
     tcaaacttta agtacggaag aagacgaata caaatatgat gaaatcaatc aatatcttaa      1380
     tacaagatat ttaagtcctc ctgaagctat gtacagatta ttagaatatt gtttacacga      1440
     aatttcgcat gttataaaaa gattagctat tcacgataaa gatcaacaat atgtatattt      1500
     cgaaaaaggg aaggaagaaa aaattaagaa taaaataata gaaacgacat taaccgcatt      1560
     ttttaaatta aatcaaactg atcttgatgc aagaaattat ttgtattctg atataccaat      1620
     acattacaca tttgacgaaa aactaaaaac atggaacaaa aggaaaaaaa tataataaac      1680
     caatattaag cagaatgtat ttagtaaatc cgaaagaccg agaacgatac tttatcagat      1740
     tattactttt acatgttaaa gggccaacct catttgaaga tttacgtact gttaacggag      1800
     ttttatatcc tacattttat gaagctgcta tagcaaaaca gcttgtcaat gaagatgaag      1860
     agtgggataa atgtttacaa gaagcaatac aaatacagtt tccaacagta ctatgtgaat      1920
     tgtttgcttt tatctgtatt tttcataacc ctattaatgc acgagaatta tatgagaaat      1980
     ataagagtaa tttttatcat cctaaatatg aagaatgtgc aggtgaaaat atagcactaa      2040
     atgcaattga aaaagtaatg caagcaaacg gtttgacgtt aagtgatttt aatttgccta      2100
     atataacaat gaacattgaa gaatttgata atgcaacatt tttgtataaa gaaaaaaact      2160
     aatatgctaa atgaattaca aaagaaaatt gcatccctta acattaatca aaaaaatata      2220
     tatgatgcag ttttagaaag tttaaattat aaacaggata agtgtatttt tattgacgga      2280
     ccaggrgcca ggagagagtg gaaaaagtta ttcttaaaga aagtttaaat tataaacagg      2340
     ataagtgtat ttttattgac ggaccaggcg ggagtggaaa aagttattta ctyaatgttt      2400
     taatagatta cttaaaatta cataatatac catttttatg tgttgcttgg acaggtattg      2460
     cagcgaactt acttagtaat ggaagaacag tacatacaac atttaaatta ccactgaata      2520
     ttaatgactg tacaacatgt aatgttaaac ctaattctgt aaatggaaga aaacttaaag      2580
     atgtacaaat tataatatgg gatgaaatat caatgacatc gaaatttgct tttgaagcag      2640
     ttgatcgtct ttttcaagat ttatgtgacg taacagtaat atttggtggt aaatctatgc      2700
     ttgtttcagg agattttaga caaacattac cggtagttcg acacggtagt cgaattgaag      2760
     taatcgaaaa ttcagtgaag tatagctatt tatggacgaa ttttagacgc atgacattga      2820
     atcaaaacct tcgtgtatcc aacaatgatg acaattttaa acaatggcta ttaaatgttg      2880
     gtgatggaaa acgtttaaat ttatatgaag aagaaaatga attatttgaa atacctgtta      2940
     acatgatatc aaaaggagac atcattacag aaatctttgg aaataacata aaaatgaatg      3000
     acgaaacatt aaaggataaa gtaattcttg ctcctaaaaa caatgatgta attgatatta      3060
     ataataaaat actggatatt atggaaggac atttcgttga atatttaagt atagatacag      3120
     cagaagatga taatggagaa aacttagatg ttatgttacc tacagaattt ctgaattctt      3180
     taactcctaa tggacttcct ccacataaat taaaattgaa aattggagct attgtaattt      3240
     tattaagaaa tttaaatatt aatgaaggtc tttgtaatgg aacacgatta atagttaaac      3300
     aatttttraa gtattcgatc caagcagaaa ttttgaatgg aaagaatatt ggaaaattag      3360
     ttttgatacc aagaatcacc atctaaagaa gaacttccat ttaatatgcg tagaaaacaa      3420
     tttcctatta gattaggttt cgcattgaca ataaataaat cacaaggtca gtcatataat      3480
     aaagttggcg tctatctgcc atcaccagtt tttagtcatg gtcagttata tgtggctcta      3540
     tctagagtaa aagacagaca atagtaaaca tacaaaaatt tacactaaga atattgtata      3600
     caaggaaata ttataaacag tacaatatta taacagctgc actttttttt taaatgcagc      3660
     gctggaaata tgagaatcgg ctgcagcatt ttttaaatgc agcgctggaa atatgagaat      3720
     cggctgcagc attttttaaa tgcagc                                           3746
//
ID   Helitron-7_DRh repbase;    DNA;    INV; 2908 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-7_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2908
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1393-1393 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1501..2760
FT                 /product="Helitron-7_DRh_1p"
FT                 /note="helicase."
FT                 /translation="NLLDKLIVGKSSKLKKIALAVASSGIAATLLNGGRTA
FT                 HSTFKLPLDLVNLETPHCSISKQCNMAAVFKDCKLIVWDECTMSHKGGLEA
FT                 INRTLQDINENTMLMGGITVLLAGDFRQTLPVVPRGTRADEIKACLKSSFL
FT                 WPQIKKLALTKNMRVHLKGDSSAGIFAETLLKIGNGVHPTVDGKIVITSRL
FT                 GNVVKNVQDLTSKIFPDISNISCKSLDWLSERAILTTKNERATTINNLLLN
FT                 SFDGLEVSYKSVDSVPDADNAVHYPVEFLNSLNPPGIPQHNLSLRIGAPVM
FT                 LLRNLSPPKLCNGTRLQIKGLHKNVIEATVFTGCAKGETVFIPRIPLIPSS
FT                 LPFQFKRLQFPLKVCFAITINKSQGQTLKLAGLDLREDCFSHGQFYVACSR
FT                 VSSASSLIILAPEGSSKNVVYTEVLK"
XX
SQ   Sequence 2908 BP; 950 A; 511 C; 549 G; 898 T; 0 other;
     atccctaaag attataaaat gaaagaccga tttttaaggg gatacggcca cagcccaaac        60
     cgtaagagca agagcagcca aattttttca cagtattcca ttgggggcgt gggcgcccac       120
     taagatccga tatgtccccc cagtggcccc aaacagctcc aacatccatt attctgagca       180
     aaaaaaagtt gatgtattta agcttaactt ctaaagtggt tggaatttcg atatttggtt       240
     ttttccgaat tttaggtttt gaaaaggcct aattagaaat ctaaaagaaa tttcgatatc       300
     ccccataatt tgggggctac atttaaaatt aacttttcga tttaaaaaat ctaaaccgct       360
     gctccgatca agatgatttt tcgctcaata gttattctat ggcccaaatg cttaagttta       420
     atttttcaag tttttaacat ttttttaagt atttttaacg aatttattta gattttctaa       480
     gttattgcgt tgcattttgc gggagcctgt cgagagagcg aaacccagag agcggatgcc       540
     aagagagcga cggccgagag agcaacagcc aagaaaactg atgaggggga ggggtagtgc       600
     tgcagggaaa ggggagggga aagaggcaat ttaagttaaa tttgttttgg attttaaaaa       660
     cttaaactgc tgctccgatc aatatgattt tcgatcaata gtcagtcctg tggatcaaat       720
     gcttaggttt tatttttcat tttgtagcag aagtaagagc cttatttaat ttccaccatg       780
     gaagaaaata gaaaattact acaaattctg taagcaaagc caaaatgttt ccaagttaaa       840
     tattaatctt aagattcgaa cttttgacca aatacgtatg tacatatgta tatttggata       900
     tgttttgatt tgcttatatg tacaatacat gtacatacat acaatgtgtg tgtatgtttc       960
     tattcgaaag tagataatgt gcttaaatac aaataaaatg atttattata cccgtttatc      1020
     gatcaaatgt ggaatctgaa aataatacgt tactttgctg tttttgtatt ggatgccaat      1080
     cttttactgt gtgtacaaag gttttcgttt cattcaaaac aagaaatttg aaaacaacaa      1140
     attccaattt acaaacaagt atacatattt gtgcgcaaat taaaattgca ttgataacat      1200
     tgtaactgat aaaaagtata caagctcacg acttttactt ggatcacttt catttattat      1260
     atagctctgc cagtatcctt ctgattctct ctcttgaagg atcttctaca aaggttgttt      1320
     acacaaaggt tttcaaaaaa cgcccaaata agaaataaga aagtcctgac aacccaattt      1380
     cctaactcca aactaatatt aagcgaacga gcaaaaagtc gtatacaata caattttaca      1440
     aagcgttggg gctgagatgg gtgaaatatt ttttttggat gcacctggag ggacaggtaa      1500
     aaccttcttg acaaacttat tgttggcaaa agttcgaagt taaaaaaaat agccctagct      1560
     gtagcatctt ccggtatagc tgctaccctg ctcaatggag gtcgaactgc tcattctaca      1620
     tttaaacttc ctttggattt agttaattta gaaacacctc attgctctat ttcaaagcaa      1680
     tgtaatatgg ctgcggtgtt taaagattgt aagttaattg tttgggatga gtgcacaatg      1740
     tcacataaag gtgggcttga agccataaat agaaccctgc aagatattaa tgagaatact      1800
     atgttgatgg gtggtattac agtcctgcta gctggagact ttcgccaaac ccttcctgtt      1860
     gtgccaagag gtacaagagc tgacgaaata aaggcctgtt taaaatcttc atttttatgg      1920
     ccacagataa aaaaactagc gctcacgaaa aatatgcgag tgcacttaaa aggagacagt      1980
     tctgcaggaa tttttgccga aactctttta aaaattggga atggcgtcca tccaacagtt      2040
     gatggaaaaa tagttataac atcacgctta ggaaatgtag tcaaaaacgt tcaagacctt      2100
     acatccaaaa tatttcctga catttccaac atatcatgta aaagcttaga ttggctatct      2160
     gagcgcgcca ttttgacaac gaaaaatgaa agagcaacca ctattaataa tttattgcta      2220
     aactcatttg atggtttaga agtctcctat aaatcggtcg actctgttcc tgatgctgat      2280
     aatgctgttc attaccctgt tgaattttta aattccttga atcctccagg aattcctcag      2340
     cataatctgt ctcttaggat tggagcaccc gtaatgttat tgcgaaattt aagtccccca      2400
     aagttatgca atgggacacg attgcagata aaaggtcttc ataagaatgt aatcgaagca      2460
     acagtattta cggggtgcgc gaagggggaa acagtgttta tacccaggat cccattaata      2520
     ccatccagtc tgccgtttca gtttaaaagg ctacaattcc ctctaaaagt ttgctttgca      2580
     ataactataa ataaatcgca ggggcagact ttgaagctgg ctggactaga tcttagagaa      2640
     gattgcttct ctcacggaca attttatgtc gcatgctcta gagttagctc tgccagtagc      2700
     cttattattc tcgctcctga aggatcttct aaaaatgttg tttacacaga ggttttaaag      2760
     taatcatatt aattaacatt attaaaccta gaaagtttca gtggaatagg tctaattgga      2820
     gataccacat taaaaaaaac gagccaattt ctctacctca ggggtggtgt ggaattggga      2880
     aagtcttgac aaccgtactc aaaactaa                                         2908
//
ID   Helitron-7_NVi repbase;    DNA;    INV; 5904 BP.
XX
AC   .
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Helitron DNA transposon - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-7_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5904
RA   Bao W. and Jurka J.;
RT   "Helitron DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1392-1392 (2009).
XX
DR   [1] (Consensus)
XX
CC   The both ends may be incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(25..381,314..895,822..1316)
FT                 /product="Helitron-7_NVi_1p"
FT                 /translation="MPLEICGQLYIYDDITSVEKRLKKNEKLTKDHIEILT
FT                 TLIPDNPYAKNFRCLNQLANIQNLPNYRLYFVRKNDKQKHRYNKPLTAECG
FT                 AIIVSKSVIPDDYDLCIYPKAKTNSDKNLFKFQMIMTFAFILKLKQILIKI
FT                 YLSKLSHHVDPMVFPLMFPSGDLGWSIGYNKKPNSESNKIYDIDNLLLNIN
FT                 RSKNNKRNLENLTLLQYYSYRLSYRPKIKHFSPLLYSGRLTQQYFIHALVM
FT                 VESNRMNFFRNNQKQLRIECYQGLFDHVFNSASNISQNFEKKKKDWVIHIT
FT                 CYIYRKSPIYAATLSRCNGNNFILPATYIGSPRYMQQHYQDAMAITRAKSR
FT                 PDLLITMTCNPKWKELKMVLKNFPSGTTPNDIPNITVRLFYAKFNSFLNDT
FT                 LKNKIFGEVLAYVYIIEFQKRGLPHAHIVVTLHPNNKIMTPESINKYISAE
FT                 IPDNSNKDLQKLVIKHMLHGPHTDTSPCLKKK*"
FT   CDS           join(1385..1615,1612..3045,2961..3803)
FT                 /product="Helitron-7_NVi_2p"
FT                 /translation="MVIHYIVGYNTSENHTYSTKKYKQIIPVDNRMVVPYN
FT                 SFLLQKYKCHINVEYCASIQSIKYIFDYIHKGGDRAKFKKKIDDNENNEPD
FT                 TIVFDEITQFIDGRYLSGMEVAWRLQEFPLCGRSHTVTRLAVHTKDQQKII
FT                 FEEHKESEALRNAETTLTAWFKLKKTDDFAKNITYVEIPQYYRFDQKTKSW
FT                 IKRSRNYKYSAIRRLNVVYPKDSERFFLKLILNRMKGATSFEDLRTYDNKL
FT                 YQSYKEAALAMGLVADDSCVYNIFEEACQIMLPFQLRKFFAWFILAENIQG
FT                 NTIWNMFKNFFTEDFKENKENNALSHIQSILETEERCCKDFSLPEPANLIV
FT                 NDDMSSENIMQSATIFKQMVNQLNEDQHSIFTEIINSKTNIYFIDGPGGSG
FT                 KTFLYKTLIHYFISLNKQVLSMAWTGIASILLPKGMTSHRTFKLPLDLDNV
FT                 DTAFLKLESDKKKLRLADLIIWDEASMIPKKALEIIDRTLQDVCYNKLPFG
FT                 GKLIVLGGDFRQILPVMKHGYRNSIVEETIKYSKLWPLFKVLKLKKIFVLM
FT                 IENSHHYYIFQIMASFQSFKIKKNIRSNDREFSSLLLDIGEGKINPFRIPQ
FT                 LWKTNDVCDKIYSNINQNISINSVILAPHNEDIKIINNKVLKLLYGDSWTY
FT                 YSIDYATHKGVDQTDENIHLNYPIEMLNEIREGLPPHKLDLKINSTVMLIR
FT                 NLSIIDGLCNGTRLKIVKLYQYNIEAEIITGENIGNKVFIPRITLNTGENS
FT                 SFPFTLYRKQFPIILAFAITINKSQGQSFDSLGIFLRRPLFSHGQLYVALS
FT                 RCKNPNKIFIQNELEDSSKIDNIVWSEIFKDAI*"
XX
SQ   Sequence 5904 BP; 2305 A; 729 C; 845 G; 2024 T; 1 other;
     tctcatattt ctccgaattc actgatgcct ttagaaatct gtggtcagtt atatatttat        60
     gatgatataa cttctgtaga aaaaagatta aaaaagaatg aaaagttaac taaagatcat       120
     atagaaatat tgactactct tattcccgat aatccatacg ctaaaaattt tagatgtttg       180
     aatcaattag caaatataca aaatttacca aactacagat tatattttgt tcgtaaaaat       240
     gacaaacaga agcatagata taacaaacca cttacagctg aatgcggtgc aatcattgtt       300
     tctaaatcag tgattccaga tgattatgac ctttgcattt atcctaaagc taaaacaaat       360
     tctgataaaa atttatttaa gtaaattatc tcatcatgta gatcctatgg tttttccttt       420
     aatgtttcca tctggtgatt taggatggag tatcgggtac aataaaaaac caaattctga       480
     atcaaataaa atttatgata tagataatct tctccttaat ataaatagaa gtaaaaataa       540
     taaaagaaat ttagaaaatc tcactctttt acaatattac tcttataggc tatcatatag       600
     accaaaaata aaacatttct ctccattatt atatagtggt agacttactc aacaatactt       660
     tatacatgca cttgttatgg tagaaagtaa tagaatgaac ttcttcagaa ataatcaaaa       720
     acaattaagg attgaatgtt atcaaggttt attcgatcat gtttttaatt ctgcttcgaa       780
     tatttcacaa aattttgaaa aaaaaaagaa agattgggta attcatatta cctgctacat       840
     atataggaag tccccgatat atgcagcaac attatcaaga tgcaatggca ataactagag       900
     ctaagtctag accagattta ttaattacta tgacttgtaa tcctaaatgg aaagaattaa       960
     aaatggttct aaaaaatttt cctagtggta ctactccaaa tgatattcca aatattactg      1020
     ttagattgtt ctatgcaaaa ttcaattcgt ttttaaatga tactttaaaa aataaaattt      1080
     ttggagaagt acttgcatat gtatatataa tagaatttca aaaaagagga ttaccacatg      1140
     cgcatatagt tgtcacattg catcctaata acaaaataat gacacctgaa tcaataaata      1200
     aatacatttc cgctgagatt ccagacaatt caaataaaga tttacaaaaa ttagtaatca      1260
     aacacatgtt acatggacca catactgata catctccttg tttaaaaaaa aaataaaaaa      1320
     agtaatacta cttgtattaa aaattttccc aaagaatttt gctaccacac aacttttaaa      1380
     gtaaatggtt atccattata tcgtaggtta taatacatct gaaaatcaca cgtattcaac      1440
     aaaaaagtat aagcaaatta ttccagttga taaccgtatg gtcgttcctt acaatagctt      1500
     tctactgcaa aagtataaat gtcatataaa tgtagaatat tgtgcatcta ttcaaagtat      1560
     taaatatata tttgattaca tacataaggg cggagataga gcaaaattta aaaaatagat      1620
     gataatgaga ataatgaacc agacactata gtttttgatg aaattactca atttattgat      1680
     ggaaggtatt tgagcggaat ggaagtagcc tggcgactac aagaatttcc attatgtggt      1740
     agaagccata ctgttactcg tttagcagtt catactaagg atcaacaaaa aataattttt      1800
     gaagaacata aagagtcaga agcattgcga aacgcagaaa caactttaac ggcatggttt      1860
     aaattaaaaa aaacagatga ttttgcaaaa aatattactt atgttgaaat tccgcaatat      1920
     tatagatttg atcaaaaaac aaaatcttgg ataaaacgat cgcgtaatta taaatatagt      1980
     gccattcgac gattaaatgt agtatatcca aaagatagtg aaagattttt tttgaagttg      2040
     atactaaaca gaatgaaagg tgctacttct tttgaagatt tgcgaactta tgataataaa      2100
     ctatatcaat cttataaaga agcagcactt gctatgggtt tagtagctga tgactcttgt      2160
     gtttataata ttttcgaaga ggcctgtcaa ataatgttgc cctttcaatt acgtaaattt      2220
     ttcgcttggt ttatattagc agaaaacatc caaggaaata caatttggaa tatgttcaaa      2280
     aattttttta ctgaagattt taaagaaaat aaagaaaata atgctttatc tcatatccaa      2340
     agtatattag aaacagaaga aagatgttgt aaggatttta gtttaccaga acctgctaat      2400
     cttattgtta atgatgatat gtcttccgaa aacataatgc aaagtgccac tattttcaaa      2460
     caaatggtaa atcaattaaa tgaagatcaa cactccattt ttacagaaat cattaacagt      2520
     aaaactaaca tttactttat tgatggtcct ggaggttcag gaaaaacttt cttatacaaa      2580
     actttaattc actattttat ttcattgaac aaacaagtct tatcaatggc ttggactggt      2640
     attgcttcta tattattacc aaaaggaatg acaagtcata gaacttttaa attaccttta      2700
     gatttggata atgtagatac tgcttttcta aaattagaat cggataagaa aaaattaagg      2760
     ttggctgatt taattatttg ggatgaagcc tctatgattc cgaaaaaagc tttagaaata      2820
     atagatcgaa ccttgcaaga tgtatgctat aataaattac cttttggagg aaaattaata      2880
     gtattaggag gtgattttag acaaattctt ccagtaatga aacatggtta tagaaattct      2940
     atcgttgagg aaacaattaa atattccaaa ttatggcctc ttttcaaagt tttaaaatta      3000
     aaaaaaatat tcgttctaat gatagagaat tctcatcatt attattagat ataggagaag      3060
     gtaaaattaa tcctttcaga atacctcaac tttggaaaac taatgatgtt tgtgacaaaa      3120
     tttatagcaa tattaatcaa aatatttcta taaattctgt aattttagct cctcataatg      3180
     aagatattaa aattataaat aataaagtat taaaattgtt atatggtgat tcatggacat      3240
     attacagtat agattacgca acacataagg gtgtagatca aactgacgaa aatattcatc      3300
     taaattatcc aattgaaatg ttaaatgaaa ttagagaagg tcttccacct cataaattgg      3360
     acttaaaaat aaattcaaca gtaatgttaa ttcgaaattt gagtataata gatggtctat      3420
     gcaatgggac tcgtttaaaa attgttaaat tatatcaata taatattgaa gcagaaataa      3480
     ttactggaga gaatattgga aataaagtct ttataccaag aatcacctta aatactggag      3540
     aaaattcttc atttccattt actctttata gaaaacaatt tccaattata ttagctttcg      3600
     caataacaat aaataaatct caaggacaaa gttttgattc cttaggaatt tttcttagac      3660
     gaccattatt ttctcatggt caattatatg tagctttatc tagatgtaaa aatcctaata      3720
     aaatatttat tcaaaatgaa ttagaagact cttcaaaaat cgataatatt gtgtggagtg      3780
     agattttcaa agatgcaatt taaaacaaat ttattgcatt attttttttt taaatcctat      3840
     gagttattat tataaatatg ttttaaaaat atttcatcga aattaaaaaa aaaaaaacaa      3900
     atttttttta tagattatta ttttttaaga cctccgttac ttttttttat attacgatac      3960
     agtaattaat tatctttctt tcaaagctcg ccaacaaatt ttaataattt ggtttaaaca      4020
     aaaaatacta atttttaagt tcaaatattt atttacttat tattatattt tttagcagat      4080
     tattaacaat ggaatgggat ccagttcaaa attcattagt tcgtgtagag aatgttgaac      4140
     acagagatta tttaattgca ttgaataatc aaatagatca acacttaatc gaacaagtaa      4200
     attatgaact ttacttgaat gatttagtaa gagatcacga aaataataaa ttaaaagagt      4260
     taaattctca aatagaattt tatgaaatat ttgacaatga aatggatgta gcttcaatat      4320
     tttccaattt agatgaaatt cctactgata taactttaac tattcaaaag attttaaaat      4380
     ttcgtaaaaa aaataattta ttaccaagta aactcaaaga taataatcat gatgtatatg      4440
     ttaaatatat tttaaatata agcaacatta tacatcatat tcaattaact acaaaaaata      4500
     attaatttgt aacatttttt tattattatt tggaacaaca ctaaattatt tctttcagat      4560
     gcaggaaaca atttaaatta tttataaaat tatttactaa cgaacttaat ttacagattg      4620
     gaagtatgta aatcaacatc agtcaataat gcaagcatag tcatccgtta tctctagtag      4680
     aaaatgttaa ataaataaaa attattatta ttttagtttt tttttgtaca aaaaaaatca      4740
     aatgaaatat tttacgttat attttcttaa aattgatcgt aaatattatc taaatatttt      4800
     tcatcaaaat tcaatcacaa tatttttttt cataacaaat tattattttt taagacattt      4860
     gaaaattttt taattataga aaattagaat cactaaaaat atttctttat aaattatttt      4920
     tttgacaact ttcaatatac acaatataca aacagaaacc aatacagaac agatacacaa      4980
     ataattatta gataatatca taagtttatt tcgtattatt ataggacatg atataataat      5040
     acttagttga cttgtaaaaa tttaatgatt atttgtacac ttttacatga aagaagtttg      5100
     aattaaattt aagcttaaaa acttctttct agtaaaagtg tttctgtagg acggaggatg      5160
     gtatgaggtg gagtcttagg ggaggaggat tggtatctaa gactcccgtg gttatatggc      5220
     tctaggcgat gattccacgg ttttttttag attattgtat acaaatttta attgataaaa      5280
     atggatcgga attaatcgtt tcatttttaa caataaccat aattttatat aatttaatca      5340
     tgtcatttaa ttatgtaaaa ttattggtga tttttataca ataaaawaca aaaaaaaatc      5400
     aacgcaccta aagtacattg tattatgact ctaatacaat atgctcgaca gtacctcttg      5460
     ggtggtgtgg aaaactgtca ttctaaactt taaaccgatg tatcgattag aaatttagtg      5520
     aggttttgat ctttacattt ttgatgtaaa gatcggacat aacgatcgga cgctttaatc      5580
     attttatttt aattctatcc aatcgtaaaa tgttataaat ttgtatctaa ttgttacatt      5640
     cttctgtctt acaataatcc tcaaaatgtt ttacttctca aagtgtgaaa ttactccaaa      5700
     gagaagaagt ggagggaaag tggaggggaa gtggagggaa agtgcagggg aagtggaggg      5760
     aaagtggagg gaagtggagg gaaatggagg gaagtggagg ggttagtgga gggacaacgt      5820
     agggatagtg gagggatagt ggaggaaagt ggagggaagt ggagggggtg gaggggattt      5880
     tcaattaaaa tcacgcttac aact                                             5904
//
ID   Helitron-8_DRh repbase;    DNA;    INV; 3042 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-8_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3042
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1394-1394 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..254,113..829,778..1737,1730..2701)
FT                 /product="Helitron-8_DRh_1p"
FT                 /note="helicase."
FT                 /translation="IDSYICAEIPDLQKDPLLHEIVKTNMIHGPCGVLNIN
FT                 SPCMKKVNAQKNFLKSFLRKLLQEMMVIPNIGEDPQWMGGLLLKLMVFAMY
FT                 EEGKCTKKFPKKFLKETITGNDGYXQYRRRSPMDGGLTVKINGITVDNRWV
FT                 VPYNSVLLRTFGAHINVEHCNSVKSIKYICKYVNKGSDQATVAVESLKDEV
FT                 HVYQSGRYISSSEAVWRILSFPIHERYPPIFHLSVHLENGQRIYFDPNKPN
FT                 QLANQLTNPAKTTLTAFFDLCKIDHFAKTLLYVEVPSYYIWANKKFQRRKX
FT                 GLDVPEFSGVKKDNTLGVCIQYIQKIVSAITYFGRVYTIHPKNSECYYLRL
FT                 LLHEVRGPTSFSFLKTVNGVLYDTFQLACKALGLLEDDKHWDXTLXEAXLC
FT                 QSPNKLRDLFAIMLTHCQLSDAMXLWNKYKESLSEDILYRLKSRIDGDIDP
FT                 GLMEXVFNKCLICXEDLTLSXGGDVLSSYGLPEANRDQEVLENXDYLREMN
FT                 YEINEVQVSNDENSLTPEQKDCFKTILESVGAGNGGMYFLDAPGGTGKTFL
FT                 LNLLLAKVRQDKKIALAVASSGIAATLLTGGRTAHSAFKLPFDLINMETPY
FT                 CNISKQSNXAFVLKXCKLIVWDECTMAHKGGFEALDRXXKDIKRQRGNDLL
FT                 MGGITVLLAGDFRQTLPVVPRGTRADEIKSCIKSSFLWCKIQKMALTKNMR
FT                 VHLLGDGTAGVFAQTLLKIGNGDYPTXXGKIKXSSSLGTVVSTLEELTSKI
FT                 FPDISEILHKSLDWLSERAILASRNDRAASINDQLIKSFNGEEVTYKSVDS
FT                 VTEPEDAVHYPAEFLNXQNPAGLPLHVLSLKIGTPIMLLRNLXPPKLCNGT
FT                 RLQVKALHKFVIEAVIFTGCAKGETVFIPRIPLTSSNLPFEFKRLQFPVKV
FT                 CFAITINKSQGQTLKVAGLDLRDECFSHGQFYVACSRVSSAKSLMILSHDG
FT                 QTKNVVYREVLK"
XX
SQ   Sequence 3042 BP; 994 A; 525 C; 599 G; 882 T; 42 other;
     aaatcgattc ttacatttgt gcagaaattc ctgatttaca aaaggatcct ttgctgcatg        60
     agattgttaa gactaacatg atacatgggc catgtggtgt attaaatatt aattcgccat       120
     gtatgaagaa ggtaaatgca caaaaaaatt tcctaaaaag tttcttaagg aaactattac       180
     aggaaatgat ggttatmccc aatatcggcg aagatcccca atggatgggg ggcttactgt       240
     taaaattaat ggtataactg tagataatcg ttgggttgtg ccatacaatt ccgtgctttt       300
     gcggaccttc ggagctcata taaatgtgga acattgcaac tcagtaaagt ctattaaata       360
     catttgtaaa tatgttaaca agggcagtga ccaagcaaca gttgcagtcg agagtcttaa       420
     agatgaggtc catgtgtacc aaagtggtcg atatataagt agctcagagg cagtatggag       480
     gattttatcg tttccaatac atgaaagata tccccctatt tttcatttaa gtgttcattt       540
     ggaaaatggt cagcggatat actttgaccc aaataaaccc aatcaattag ctaatcaact       600
     aactaatccg gcaaaaacta cgcttacagc gttcttcgat ctttgcaaaa ttgaccactt       660
     tgcaaaaaca cttctttatg ttgaggtgcc atcctattac atttgggcta ataaaaaatt       720
     ccaaagaaga aagaakgggt tagatgtacc agagttttct ggtgttaaaa aggataatac       780
     tttgggcgtg tgtatacaat acatccaaaa aatagtgagt gctattactt aagactttta       840
     cttcacgaag ttcggggtcc aacgtcattc tcttttttaa aaaccgttaa tggtgttttg       900
     tatgatacat tccaattggc ttgcaaagcc ttaggcttac ttgaagacga taagcactgg       960
     gactkcacgt tggmagaagc akcattatgc cagtctccaa ataaattgcg cgacctcttt      1020
     gcaataatgt taactcattg ccagttatct gatgccatgm ktctttggaa taagtacaag      1080
     gaaagtcttt cagaagatat attgtacaga ctaaaatcta gaatagatgg cgatatagat      1140
     ccmggactka tggaaagwgt tttcaataaa tgtttaattt gcmttgaaga tctmacattg      1200
     tcmatsggcg gagatgtctt atcaagttat ggtttacccg aggcaaacag agatcaagag      1260
     gttttggaaa acakggatta cttgagagaa atgaattacg aaattaatga agttcaagta      1320
     agcaacgatg aaaattccct tactccagaa caaaaagact gttttaaaac gatcttagaa      1380
     agcgttggag ccggaaacgg tggaatgtat ttcttggatg ctcctggtgg cacwgggaaa      1440
     acgtttcttt taaatttgct attggcaaaa gttagacaag acaaaaaaat tgctttggct      1500
     gttgcwtctt caggaattgc ggccacgctm ttaaccggag gacggacagc ccattcwgca      1560
     tttaagcttc cwtttgattt aataaatatg gaaacaccct attgtaacat ttccaaacag      1620
     tccaacatkg cwttcgtcct taaamattgt aaactcattg tttgggatga atgtactatg      1680
     gctcataaag gtggatttga agctctcgat cgawckwtaa aggacataaa gaggcaatga      1740
     cttattaatg ggaggtatwa ccgttctatt ggctggagat tttmgacaaa cgctcccagt      1800
     tgtaccccgw ggaacaaggg ccgatgagat aaaatcttgc ataaaatctt cctttttgtg      1860
     gtgtaaaata caaaaaatgg ctcttacaaa aaatatgcgc gtgcacttac taggtgatgg      1920
     aackgccggt gtttttgccc aaactttact taaaatagga aatggagatt atccgackst      1980
     tgakggmaaa ataaaawtkt catcaagctt gggtactgta gtaagcactt tggaagagct      2040
     tacatctaaa atttttcctg atatttcaga aatcttacac aagtcattgg actggctatc      2100
     agaacgagcc attttagctt caagaaatga cagagctgct tcaattaatg atcagctaat      2160
     aaaatcattt aatggagagg aagttacata caaatcagta gactctgtta ctgagccaga      2220
     agatgctgtg cattatcctg cagaatttct taacawgcag aatccagcag gactsccwtt      2280
     gcacgttctt tcgcttaaga tcggwacacc aatwatgttg ttaagaaact taagwccccc      2340
     aaagttatgc aatggaacga gattgcaagt gaaagctctt cacaaatttg ttattgaagc      2400
     cgttattttt accggctgcg ccaagggaga gacagtattc ataccaagaa ttcccttaac      2460
     gtcatcaaac ttaccttttg aatttaaacg cctacagttt cctgtaaagg tttgttttgc      2520
     gataacaata aataaatcac aaggacagac tttgaaagta gctggattag accttaggga      2580
     cgagtgtttc tcccacggcc aattttatgt ggcctgttca agagtcagct cggcaaagag      2640
     ccttatgatc ctgtctcatg atggtcaaac aaagaatgtt gtttacagag aggttttaaa      2700
     ataagaatat attaaaaatg ttttaattgt ggactaggcc tatttgggga aaccacctta      2760
     aataaaaacg cgccgtatcc cctacctccg ggtggtgtgg aaatggggat tcattttagt      2820
     ttcagttaaa aactgaaagt gtaaagaaag aaaacctcaa ttacattaaa ttatatagtt      2880
     aatactctat tacttttaaa taagaactcc agctttaaga taaatgcgaa taaggaatat      2940
     acagatgtgg agagctatcc gcaaaatata cagacatatc tacattcaaa attatccacc      3000
     gcaagcaaag ctgcgggcac cttgctagta tatatatata ta                         3042
//
ID   Helitron-9_DRh repbase;    DNA;    INV; 4989 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-9_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4989
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1395-1395 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(812..1282,1191..2063,2072..2743,2695..4986)
FT                 /product="Helitron-9_DRh_1p"
FT                 /note="helicase."
FT                 /translation="MRSFXXYRIMXQERNTREHAIRREDXSYRESERGMDA
FT                 ARHAXMRXFEDYRIMEQERNTREQTIRRQSPCYRXDYRQRDAEYHRTARSD
FT                 HARRSQQQRINSSQRRMTRQQTRIMVEQVRQMNEARVINYRSNSQNRAVES
FT                 QRQSQRNIDARARLSPEDTIEVIHKIVQWSLKDNPSEILMRELDCLPKIEQ
FT                 IEQRELQGQIRRSGARNTYLNNIKMGPSKICTSCGGHGFPFRLKRLXKGII
FT                 VSKYPQLDVSKAFYLSEKFSNSSDRYFFCNTCHARISKGKIPNLCLSEGFD
FT                 LPEVPPCLKDLTCLEERLISPRIPFMRIVSLGYERQCAVRGAVINIPVSVS
FT                 ETVTALPRTFENTHVVQVHLKRKLEYRHSFMTETIRPGKVMEAMRYLVSTE
FT                 LYQKHNVFVSQNWLDEFRGNNEVAFIADNRDLPIVEALLNEQMEVNPAPQI
FT                 SSDFKSWRTGNIIRKRSSRKPNQIIAMAPGEGRRPVDMTTDEDAEELSFPT
FT                 ISCGEIFKCKTTDAKLSLKFGFTIDGVQKFQKXYICYKRYELTRXKDAISI
FT                 CLRKKSGNSHVTASNMMDETFVNGXIQHNDGYHLLKGLRSSPAHWEAEKKK
FT                 VLAMIRQFGLPAFFTTLSAAETKWNELLVNLCQILDKRTITEEEAGNLSSS
FT                 EKARLIRSDPVTCQGTLTIDYVNIGPSYLPRYFDYRLRQLMKLFKSNIFEE
FT                 FNSTHFYWRIEFQHRGSPHSHGMYWLQNAPKIQSDIGPGNLEEVIAFIDRF
FT                 ISTNGDNVDLQDIIKYQLHRHTVTCKREFNRDGKCRFNMPFPPMPETKILY
FT                 PFSDDERITDRQKTTWRKMQDLLDDKRNVTDVEAQHLNHFENILNKLEVNY
FT                 EEYILAIRSTLKKPQIFLRRKFSDRMLNAYNEDILKLHRANMDIQYILDVY
FT                 GCCSYIINYINKSNRGVSILLREAMEEITEGGHRDRSVKEKLQHLGNKFIN
FT                 GTEISAQEAVYNILGLHLSETSNGSKFINTSLPEQRVRMVKSKKELERLPS
FT                 DSTDIYVAGLNDYYTLRPESMEQVCLADFVALYDRKVRKTRNEEDEYAEHE
FT                 EEDEEENIAAENLIMLNNSGTLKKRSKPYILRWRRFSKNSSRSDYYRELVM
FT                 LFYPWRNEQMDILEKNNEETYNLNKVLIETNRKNYDKISEEDFEEIIREIQ
FT                 QNNNDDLEDNDILASQLLDDEFRGFAIPEVERNPNVFQENSTDPSSDEDGP
FT                 RVLKLPPLIPVDDVCSLVRSLNSKQRQYYAHLMHNMNQKNIFYEFIGGGAG
FT                 VGKSRLISTIYQSLMLRFNTLAGSNPDSAKVLLCAPTGKAAFGIKGHTLHS
FT                 LFSLPVNQSSAGLKPLSADTLNTTYSKLMDVKLIIIDEISMVGTRVLSYLD
FT                 CRLKQIYRTNQYFGGISIIVFGDLKQLQPVGDKWIFKPNTRDVYSAIIGTP
FT                 LWDLFKFFELTEIMRQREDCDF"
XX
SQ   Sequence 4989 BP; 1695 A; 895 C; 1090 G; 1290 T; 19 other;
     tatatatgaa tatatataat atatctatct aattttaata tttaaaatct aaatcttaaa        60
     tttgagaaac atttcggacg aatttttatc aawatgccgc ggctaaggaa aacgtccgcg       120
     gaacaaagac gtckcgctat taataatcgt agtcaggctt tttatakaga taatttaaat       180
     gaagtacgtt cccgaaattc gcaacgattg gcagaagctc gggaagcgga tacgcaakgc       240
     agagaagaag aacgctcgca agatgcacag gctcattcct tacgcagacg aaatcgtagg       300
     ttcgcaattc gagagcagaa tcggaatacc gtggatcatg ccattcgaag agaaagcccc       360
     acccatagag agtctgagcg cgaaactgat gctgcgcgct acgctttaat gcgttcttcg       420
     gaagaatata ggttattggc tcaggaaaga aatactaggg agcatgccat aagaagggaa       480
     gatccgactt atagagagtc ggaacgcgaa gtggatgctg cgcgccatgc ttttatgcgc       540
     tccttcgaga ataatggtga gagctgcgcg tcacgccggc gcctttcgag aattatmgaa       600
     taatggatca gggaagaaat accagggagc acgcaattag aagggaagat ccgacttata       660
     gagagtctga acgcgaagag gatgctgtgc gccacgctct gatgcgctct ttaatggatc       720
     aggaaagaaa taccagggag cacgccattc gaagggaaga tcctagttat agagagtctg       780
     aacgtgaaat ggatgctggc gccacgctct gatgcgctct ttcgawgant atagaataat       840
     ggawcaggag agaaatacca gggagcacgc cattagaagg gaagatncga gttatagaga       900
     gtctgaacgn ggaatggatg ctgcgcgcca cgctcwkatg cgcwctttcg aagactatag       960
     aataatggaa caggagagaa ataccaggga gcaaaccata agaaggcaaa gtccctgtta      1020
     tagaawtgac taccgtcagc gagatgcaga ataccatcgg acggcaagga gtgatcatgc      1080
     aaggagaagc cagcagcaaa ggataaattc atcgcaaaga agaatgaccc gacagcaaac      1140
     ccgcataatg gtagagcagg tcaggcaaat gaatgaggct cgagttataa actatagaag      1200
     taattcacaa aatcgtgcag tggagtctca aagacaatcc cagcgaaata ttgatgcgag      1260
     agctagattg tctcccgaag attgaacaga ttgaacaaag agagctacaa ggacaaatta      1320
     gacgatctgg agcacgtaat acctatttaa ataatataaa gatgggtcct agtaaaatat      1380
     gtacaagttg tggaggacat ggtttccctt tcaggttaaa gcgcttaama aagggaatta      1440
     tagtatcaaa atatccgcaa ctagatgttt caaaagcctt ttacttatct gaaaagtttt      1500
     ccaattcatc tgaccgttat ttcttctgca atacatgtca cgcaaggatt tcaaaaggca      1560
     aaataccaaa cttatgctta tcggagggct tcgacctacc tgaagtgcct ccttgcttaa      1620
     aggatctaac atgcctggaa gaaagattga tttcaccgag aataccgttt atgcgaattg      1680
     tttcattggg atatgagagg caatgcgcgg taagaggagc cgttattaat attcctgttt      1740
     cggtgtcgga gactgtcaca gccctgccgc gcacttttga gaatacccat gtggttcaag      1800
     tgcatttaaa acgaaaattg gagtaccgac acagttttat gactgaaact attcgaccag      1860
     gcaaagttat ggaagcgatg cgttacttgg tcagtacgga attataccag aagcataacg      1920
     tctttgtttc tcaaaactgg ctcgatgaat ttcgaggtaa taatgaagtt gcgtttattg      1980
     ctgacaacag agatctccca attgtggagg cacttttaaa tgagcaaatg gaagtcaatc      2040
     ctgctccaca gatcagctct gattaagata atttaaatcc tggaggacag gaaacattat      2100
     tagaaaacga tccagtagaa aaccaaatca aataatagcg atggctcccg gcgagggtcg      2160
     tcgaccggta gacatgacaa ctgatgaaga tgctgaggaa ttatcttttc ccaccatttc      2220
     gtgtggagaa atctttaaat gcaaaacaac ggacgcaaag ttaagtctca aattcggttt      2280
     tacgatcgac ggtgtgcaaa agttccaaaa atkgtatata tgttataaac gctatgaact      2340
     tacacgtgkc aaagacgcaa tctcaatttg cttaaggaaa aagtctggaa actcacatgt      2400
     taccgcttca aatatgatgg atgaaacatt tgtgaacggc ttwatacagc ataatgatgg      2460
     atatcacctt ttgaaaggct tacgatcctc tccagctcat tgggaagctg agaagaaaaa      2520
     ggttttggct atgattcggc aatttggatt acccgctttt tttacaacgc tctcggccgc      2580
     tgagaccaag tggaatgagc ttctwgtaaa tttatgtcaa attttggata aaagaaccat      2640
     caccgaagaa gaggcgggca atctttctag ttccgaaaaa gctagattga ttagatcgga      2700
     cccagttact tgccaaggta ctttgactat agattacgtc aattgatgaa attatttaaa      2760
     tcaaatattt tcgaggaatt taattcgact catttttact ggagaattga atttcaacat      2820
     aggggatccc cacactctca tggaatgtac tggcttcaaa atgcgccaaa aatccagagt      2880
     gacattggtc ccggtaattt agaggaggta atagccttta ttgacagatt catttcgact      2940
     aacggagata atgttgactt gcaggatatc attaaatatc agttgcatag gcacaccgtt      3000
     acttgcaaaa gggaattcaa ccgagatgga aaatgtcgct ttaatatgcc atttccaccg      3060
     atgccggaaa caaaaattct atatccattt tccgatgacg aaagaattac agataggcaa      3120
     aaaaccacat ggaggaaaat gcaagatctt ttggatgata aacggaacgt taccgacgtt      3180
     gaagctcaac atttaaacca ttttgaaaat atcctcaaca aactagaggt caattacgaa      3240
     gaatatattt tagctattcg atcaacttta aaaaagccgc aaatatttct acgtagaaaa      3300
     ttttcggata gaatgcttaa tgcttacaat gaggacatac taaaacttca ccgagccaac      3360
     atggacattc aatacatttt agatgtgtac ggttgttgta gctatatcat aaactacatc      3420
     aacaaatcaa atagaggagt ttcaatattg cttagagaag ctatggaaga aataacagaa      3480
     ggaggacatc gcgataggtc tgtaaaggag aaactccagc atcttggaaa taagttcata      3540
     aatggaaccg aaatatcagc tcaggaagct gtttacaata ttttagggct acatttgtca      3600
     gaaaccagta acggaagcaa gttcataaat acatcgcttc ctgagcaaag agtacgaatg      3660
     gtcaagtcaa aaaaggagtt ggagcgactg ccctcagact ctacagatat atacgtcgca      3720
     ggattaaatg actattatac acttaggccg gaaagtatgg agcaagtatg tctcgcggat      3780
     tttgtcgcac tctacgatcg aaaagtccgc aaaaccagaa atgaagaaga tgaatatgcg      3840
     gagcatgaag aggaagatga agaggagaat attgcagcgg aaaacctaat catgctgaat      3900
     aattcaggta ctcttaagaa acgaagtaag ccgtatattt tgaggtggag acggtttagt      3960
     aaaaattctt caagatctga ctattatcga gaactggtaa tgctttttta tccttggcga      4020
     aatgagcaaa tggatatcct ggaaaaaaat aatgaagaaa cgtataatct caacaaagtc      4080
     ttaattgaaa ctaatagaaa gaattacgac aaaataagtg aagaagactt tgaggaaata      4140
     ataagagaaa tacaacaaaa caacaatgat gatctcgaag acaatgacat tctcgcatca      4200
     caacttttgg atgatgaatt tcggggattt gccattcccg aagtggaacg gaatcctaat      4260
     gtgtttcaag aaaactctac tgatcccagc tctgatgaag atggtcccag agtcttaaaa      4320
     ttgcctccat taattcccgt tgatgacgtt tgtagtttag tgcgatctct taatagtaaa      4380
     caacgtcaat attatgccca tttaatgcat aatatgaatc aaaagaacat tttttatgag      4440
     tttattggag gcggcgcagg agttggaaag agtcgattaa tttcgaccat ttatcagtca      4500
     cttatgttaa gatttaacac cttggctgga agtaatccag actcggcaaa agttttactt      4560
     tgcgctccaa caggtaaagc ggcctttgga ataaaaggac atacattgca ttcattgttt      4620
     tcattacccg tgaaccagtc ttctgctgga ttgaagccat taagcgcaga tacgttgaat      4680
     actacatatt caaaacttat ggatgtaaaa ttgattataa ttgatgaaat atcaatggtg      4740
     ggaactagag tgctatcata tttggattgc cgcttaaaac aaatttacag aacaaaccaa      4800
     tattttggag gaatttccat aatagttttt ggagacctta aacagcttca gccggttggt      4860
     gacaaatgga tatttaaacc caacacaaga gacgtatata gcgcgattat tggaacaccg      4920
     ctatgggatt tgtttaaatt ttttgaattg acggagataa tgagacaacg tgaagactgt      4980
     gactttgct                                                              4989
//
ID   Helitron-like-10_Hmel repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like element from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-245
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           88..243
FT                 /product="Helitron-like-10_Hmel_1p"
FT                 /translation="IFEFLEFFSPKTIYVVISICLQIFISIGQTVWEPIGD
FT                 KECKKSPVERSARFA"
XX
SQ   Sequence 245 BP; 63 A; 54 C; 53 G; 74 T; 1 other;
     ctaggggcgc gaaccggacc tcaattttga ctcgctgcgc tcgcaaaatc tcggtagtgt        60
     tcacatgttg agcgaagcga gaaatgaatt tttgaatttt tagaattttt ttcrcctaaa       120
     accatctacg tggtcatatc tatatgtttg caaattttca tctcaatcgg tcaaaccgtt       180
     tgggagccta ttggtgacaa agagtgtaaa aagtctccag tagagcgctc cgctcgcttc       240
     gctca                                                                   245
//
ID   Helitron-like-11_Hmel repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like DNA transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-11_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1284
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           602..312
FT                 /product="Helitron-like-11_Hmel_1p"
FT                 /translation="KLLQYQKILAAKRASRRYAYTSESAAPACLTRIGGSV
FT                 VECSPATRAARVQFPADAFYLIFVTGSHVVLAFHQGQNTLFSINHKLEKKN
FT                 PPAFIATKI"
XX
SQ   Sequence 1284 BP; 431 A; 213 C; 238 G; 401 T; 1 other;
     ctagcgaccc tattgcggct tcgcccgctt ttactactgg attattcata taatgtatgt        60
     ttgcaaagca cttaagataa tgtgaaaatt aattaaaccc taatgcaacc cgcattttcg       120
     tagtttcaat aaggattttc caattgtttt acacagcaag gattttttag taggtaccgt       180
     aattttaaat ctgtggctac taatcttttc aagtacttat taaaatatat ttaaattact       240
     atttttagat agttaaatga cattaaataa tacattcaac tcgaattatc caatacgtgc       300
     aaacgcatct aaatcttcgt tgctataaag gcaggcgggt tttttttttc gagcttgtgg       360
     ttaatgctga agagggtatt ctgtccctga tgaaaagcaa gcactacgtg gctgcctgtg       420
     acgaaaatta aatagaatgc atcggccggg aattgaaccc gggctgcccg cgtggcaggc       480
     gagcattcta ccactgaacc accgatgcgt gtaaggcagg cgggcgcggc ggactcgctt       540
     gtataagcat aacgtcgcga ggcgcgtttc gcagcaagga ttttttgata ttgtaacaac       600
     ttctaaagta cttattaaaa tgaaaaacag aaaagacagt tttgatctac attaaatggc       660
     caacgtaact aatatactta tttatatgct gagagtaagg gataagtgaa acttgactcg       720
     atacagttga tgtgtgaacg gcgtgatgtg tcaayaatta aatgcgtttt tctctaaaac       780
     tattcgcaat ttcgaaatag tttaaaaagc aaattttatc ttcgtttaac gtagaaattt       840
     aataaagtat tttaaaggat aaggattaat accattatgg aaaaatatcc ctcacaataa       900
     aaaatatatt gaaattacta tttttagaca gaaatatgat cactacacgt tattcttaaa       960
     agatacgaat atgctctcgc ggactttttt gtagatctta ttaagaggaa caatactcca      1020
     gtacattttt ttcatgtagt acttaccatt aaagcagcgc atgcgcgaaa gtgtctcaac      1080
     gggtaggact ttatacacat ttatcgtatt tatgttaatt tacataagaa tgtacaaata      1140
     ataaactata tataaacctt ccctgagaaa tactcgacct aatggtgaaa accgcatcaa      1200
     aatccgttgg gtggtttaga agaagaagag ttagaaagtt cagacagaca cgaaaagcga      1260
     ctttgtttta taagatatag gata                                             1284
//
ID   Helitron-like-12_Hmel repbase;    DNA;    INV; 870 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   14-APR-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-12_Hmel.
XX
NM   Helitron-like-12_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-870
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           808..602
FT                 /product="Helitron-like-12_Hmel_1p"
FT                 /translation="TLRSLDLLVRFSLFLFCMKAAFFRSAIGYITLHYTYI
FT                 LIYFKVHSNLTCNLFCHVNNNRRCYATATATF"
XX
SQ   Sequence 870 BP; 347 A; 129 C; 133 G; 261 T; 0 other;
     ctagtggacc cggacgcggc tacgcctgct tcaactataa gaatatttat taaatatatt        60
     catgaaatta ttttcaattc tcaatagaat tagtaagaaa atataagctc aaataatcaa       120
     aaagaataat aagtagatac acattattag aaaaaattat ctgagttatt gaaatgaact       180
     aacaaaagga ttaaaagtaa ctaaaggata ggtattctta atattagaaa aagtacctaa       240
     agttttccgt acgtgcgtac atagatatcg actctacgaa ataactaaac atttctctct       300
     attaagtagg ataattttag cgggcaatat caaataaaat aagaagagaa tcaaagtgta       360
     ttttaaatta attataaaca acaaataaaa gttcgaaaat gtatgaaaat ttataaaacc       420
     gtcaacgtca tctgcccgtt cgcgtcggtc atactgtgcc gcccgctagg tggctaggtc       480
     atttggaatc agtgacatct ccttaattat ttattagtat gttatacagt aaactataat       540
     ttcaatctag ataaaatgct aaaagtgact attatattta ttttcataag gatgaatatc       600
     aaaatgtcgc ggtagcggtc gcgtagcaac gacggttgtt attaacatgg cagaataaat       660
     tgcatgtcaa attagaatgt actttaaaat atattagtat atatgtgtaa tgtaatgtta       720
     tatagcctat agcacttctg aagaatgcag ctttcataca aaacaaaaac aatgaaaatc       780
     ggaccagtag atccagagat cttagcgttc aaacaaacaa acaaacaaac aaacaaacaa       840
     actcttccgc tttattatat tagtatagat                                        870
//
ID   Helitron-like-13_Hmel repbase;    DNA;    INV; 3491 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-13_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3491
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2707..3033
FT                 /product="Helitron-like-13_Hmel_1p"
FT                 /translation="LLTHPAVDTSAVCYSSFTYPLLSAYVFHFNKYFRSCY
FT                 NIKKSLLRNGSPLAMRPPRRLPHTHRWFSGRMLACHAGGPGLIPGRCILFN
FT                 FPHRQPRSACFSSGTEYPLQH"
XX
SQ   Sequence 3491 BP; 956 A; 731 C; 646 G; 1126 T; 32 other;
     atcctatcct atatcttata aaacaaagtc gcttttcgtg tctgtctgad vtttctaact        60
     cttcttcttc taaaccaccc aacggatttt natgcggttt tcaccattag gtcgagtatt       120
     tttcrdagaa ggtttatata tagtttatta tttgtacatt cttatgtaaa ttaacataaa       180
     tacgataaat gtgtctaaag tcctacccgt tgagacactt tcgcgcatgc gctgctttaa       240
     tggtaagtac tacatgaaaa aaatgtactg gagtattgtt cctcttaata agatctacaa       300
     aaaagtccgc gagagcatat ttttatcttt taaggataac gtgtagtgat catatttctg       360
     tctaaaaata gtaatttcaa tatatttttt attgtgaggg atatttttcc ataatggtat       420
     taatccttat cctttaaaat actttattaa ttttctacgt taaacgaaga taaaatttgc       480
     tttttacact atttcgaaat tgcgaatagt tttagagaaa aacgcattta attgttgaca       540
     catcacgccg ttgacwcatc agctgtnccg antcaagttt tacttatccc ttactctcag       600
     catataaata agtatnttag ttacgttggc catttaatgt agatvrraac tgtcttttac       660
     tgwtttttca ttttaataag tactttagaa gttgttaaaa tactaaaaca tccttgctgc       720
     gaaacgcgcc tcgcgacgtt ttgcttattt atacaagcgc gtnatgagca gtcatcggtg       780
     gttcagtggt agaatgctcg cctgccacgc gggcggcccg ggttcgattc ccggccgatg       840
     cattctattt aattttcctc acaggcagcc acgtagtgcc tacccaaccg gtgtcgctgt       900
     tttaacagca ttaaccacaa gctcgaaaaa aaacccgcct gcctctatag caaagaagat       960
     ttagatgcgt ttcacatatt ggataatttc agttaaatgt attatttcag cgcgatattg      1020
     gtttcatatt ttttgtatta gttattagta ggtaggtttt tgtttataat ttcttccgtt      1080
     taaaaatagt catttaaata tctaaaaata gtcatttaaa tatattttaa taagtacttg      1140
     aaaagattag tagcacagat ttaaaattac agtactaaaa aatccttgct gattaacggt      1200
     tcgccgccca ccacgcgtcc gtcgtgcccc gcaacatttt gcttataata gtggatccgc      1260
     cgcacccgcc tggcttcttt cccccgggca tggaaggaag gcctgctcat tatgctgctg      1320
     agggataccg atctataatc cttcttagta cggtcgccaa gctgttcgag aagttattyc      1380
     tctcacttcw ycagtyrcac atccacccam raagcgagca ktttggcgag cgggtatacy      1440
     actctgggta aacyacgcaa magtgatcaa ccgagakaga gtgtgagtgt gcaatagcag      1500
     tcttccttga cgtagcacgc gtattcgacc gcgtctggca cccgggctta yttcataaag      1560
     tgctcagagc cggcaccccc ccgcacgtcg cgcatgtctt tgccgctctg ctttgtaagt      1620
     gacagracat tttgcgtgag agttgagagt gctagcagcg acccgatcgc tgccgttgtc      1680
     ccagtcagaa ttttgtcacc tgctctctac gcactataca ttgatgacat cacaatgccc      1740
     tagcgagtat tactcaacga ggaatcctgt aggtcgtacg gaacctcacc ctccggcgag      1800
     tgacacaggc accatactac gtgaacacca cgcgccactc accgcaacct aaaaatagaa      1860
     accctagagg tacacattgg tcgcctcgcg tccaacgtat tccgttgcgc cgatgtatcg      1920
     ggtcacctgc acctaaggag cagcactccg catacccggc cgcccgaggt cagacgtctt      1980
     cttccgaggg actttctatc ctcctccaaa tccgactcat gagcagtcat cttggtcgtt      2040
     taatctaggc cttcctcaag aaaccgagtg ttcaattcca atcccctccc cttccatgtg      2100
     tctgctctaa agcaggtttt cgcctgagac cacggtcaga ccaacgctct gatgtcgttc      2160
     tgagctacta cggagatggc cgagagaatg cttcaattct gcgcctggca aagtaaattt      2220
     agaagtgatt gcacgtattt tggagttatc caataattat aatgtatttc cacgcgacat      2280
     agttggttac atctttcgtt taagtatttt tgggtaagag aatagtaggt agtctgttgt      2340
     ttataatttc tttcgtttaa gttttctgtt atttgtgtta tttatttgtg tttattttaa      2400
     aacaattgga aaatccttat tgraattacg aaaatgcggg ttgcattagg gtttaattaa      2460
     ttttcacatt atcttaagtg ctttgcaaac atacattata tgaataattc agtagttaag      2520
     gcgggcgaag ccgcgagcgg gtcgcaattt caatatawat tttttattgt gagccatatt      2580
     tttccataat ggtattaatc cttatccttt aaaatacttt attaattttc tacgttaaac      2640
     gaagataaaa tttgcttttt acactttttc gaaattgcga atagttttac agaaaaacgc      2700
     atttaattgt tgacacatcc cgccgttgac acatcagctg tatgttactc aagtttcact      2760
     tatcccttac tctcagcata tgtttttcat tttaataagt actttagaag ttgttacaat      2820
     atcaaaaaat ccttgctgcg aaacggctcg ccactcgcca tgcgtccgcc gcgtcgcctg      2880
     cctcacacgc atcggtggtt cagtggtaga atgctcgcct gccacgcggg cggcccgggt      2940
     ttgattcctg gccgatgcat tctctttaat tttcctcaca ggcagccacg tagtgcttgc      3000
     ttttcatcag ggacagaata ccctcttcag cattaaccac aagctcgaaa aaaaaacccg      3060
     cctgmcttta tagcaacgaa gatttagatg cgtttgcacg tattggataa ttcgagttga      3120
     atgtattatt tcagcgcgat atatttggtt tcatattttt tgtagtagtt attactaata      3180
     acttattagt aggtaggttt ttgtttataa tttcttccgt ttaaaaatag tcatttaact      3240
     atctaaaaat agtcatttaa atatatttta ataagtactt gaaaagatta gtagcacaga      3300
     tttaaaatta cggtacctac taaaaaatcc ttgctgtgta aaacaattgg aaaatcctta      3360
     ttgaaactaa aaaaatgcgg gttgcattag ggtttaatta atdttcacat tatcttaagt      3420
     gctttgcaaa catacattat atgaataatc cagtagtaaa agcgggcgaa gccgcaagag      3480
     ggtcgctagt t                                                           3491
//
ID   Helitron-like-14_Hmel repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-14_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-393
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           371..204
FT                 /product="Helitron-like-14_Hmel_1p"
FT                 /translation="SGRVCLFVCLNAKISGSTGPIYYVFVLYESCILQKCY
FT                 RLYNITLHIYTNKLKYFLI"
XX
SQ   Sequence 393 BP; 149 A; 58 C; 60 G; 126 T; 0 other;
     ctagtggacc cggacgcggc tacgcctgct tgaactataa gaatatttat taaatattat        60
     ataatatatt tatttttata aggatgaata tcaaaatata agttcatttt gggtgacgtt       120
     ttcttaaaac aacaaagaaa ctttgcaaac cggtgcttag caacgacggt tgttattaac       180
     atggcagaat aaattgcatg tcaaattaga aagtatttta atttattagt atatatgtgt       240
     aatgtaatat tatatagcct atagcacttc tgaagaatgc agctttcata caaaacaaaa       300
     acatagtaaa tcggaccagt agatccagag atcttagcgt tcaaacaaac aaacaaacaa       360
     actcttccgc tttattatat tagtatagat ata                                    393
//
ID   Helitron-like-15_Hmel repbase;    DNA;    INV; 607 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-15_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-607
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           311..511
FT                 /product="Helitron-like-15_Hmel_1p"
FT                 /translation="RPARGFTRVNYVIINFCLHDYVLVTSMQNLRLLAFVV
FT                 TKFHTNFRPQKQPLRSRILQIPVLASTYVL"
XX
SQ   Sequence 607 BP; 169 A; 142 C; 107 G; 189 T; 0 other;
     ctagcggccc gcccgcggct tcgcctgcgt gaactacgtt attattaatt tctgtctcca        60
     tgagtaccta cgtcctataa gtgacgtcca tgcaaaattt gagactccta gcatttgtag       120
     taacgaagtt tcatacaaac tttcaacccc aaaaacaacc ccttagaagt cgaatattgc       180
     aaattcccgt cttagcgagc acctacgtcc tataagtaac tcctatgcaa aatttgagat       240
     tcctagcact tgtagtttct gagatttcgt gatgagtgag tgacctttcg attttatata       300
     tatagactag cggcccgctc gcggtttcac ccgcgtgaac tatgttatta ttaatttctg       360
     tctccatgac tacgtcctag tgacgtctat gcaaaatttg agactcctag catttgtagt       420
     aacgaagttt catacaaact ttcgacccca aaaacaaccc cttagaagtc gaatattgca       480
     aattcccgtc ttagcgagca cctacgtcct ataagtaact cctatgcaaa atttgagatt       540
     cctagcacat gtagtttctg agatttcgtg atgagtgagt gacctttcga ttttatatat       600
     atagata                                                                 607
//
ID   Helitron-like-16_Hmel repbase;    DNA;    INV; 296 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-16_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-296
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..117
FT                 /product="Helitron-like-16_Hmel_1p"
FT                 /translation="HVYGSASGLLKITKKVKFKFTLIKIRTEVYVLITNLK
FT                 LT"
XX
SQ   Sequence 296 BP; 107 A; 51 C; 54 G; 84 T; 0 other;
     catgtttacg ggagcgcgag tgggctttta aaaataacta agaaagttaa atttaaattt        60
     actttaatta aaataagaac agaggtttat gttcttataa ctaacttaaa attaacttaa       120
     ctagtgaatc gaccgagcag aagtgcatgc tctaatcgac taaagaataa aatatataat       180
     aattaaaact aaaacactac gtttgtttcc catggcatga ggggattcgc gttacatacg       240
     ccgaacgctg attaggcgtt taccggtacc gttctcacgc catgaggcaa cataac           296
//
ID   Helitron-like-1_Hmel repbase;    DNA;    INV; 419 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-419
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           165..4
FT                 /product="Helitron-like-1_Hmel_1p"
FT                 /translation="IKKLCQFKVFSSTNLLIAVTVILYNCFTELTESLVFN
FT                 FFINISISSGRSPARAH"
XX
SQ   Sequence 419 BP; 156 A; 71 C; 64 G; 128 T; 0 other;
     ctagtgggcc cgtgcggggc tacgcccgct tgaaatagaa atattaataa agaaattgaa        60
     aactaaagat tcagtcaatt cagtaaaaca gttgtataaa ataactgtta cggcaattag       120
     caaatttgtc gaactaaata ctttaaattg acataacttt tttatttatg aaccgattgt       180
     aataaaataa accctatatg ttttcggaag cttgccagaa tccaatagtg aaaaccgcat       240
     ctaaatcggt taagccgatt ctgagattag cgattacaaa cgcacagaca aacagacaaa       300
     aattttaaaa atcattgttt tgggttctat tacgttaata aaggttccca ataacatttt       360
     ttttaaatat cttccaagta cagacaccga ccctcttacg attttattat aagtataga        419
//
ID   Helitron-like-2_Hmel repbase;    DNA;    INV; 575 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-575
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           272..63
FT                 /product="Helitron-like-2_Hmel_1p"
FT                 /translation="YNAIKRYEHLYIFFASFCMKFTAYSSTSRRLKLILFA
FT                 ASSKPMRYFPITILKLVQTPLLTSPTRAWTVFS"
XX
SQ   Sequence 575 BP; 199 A; 97 C; 103 G; 176 T; 0 other;
     ctagcggccc ccgtgcggct acgcccactt gaaatatacg aatgtttatt taagtgtatt        60
     taagaaaaaa ccgtccaagc gcgagtcgga ctcgttaaca gaggagtctg taccaatttc       120
     aggattgtga ttgggaaata cctcataggt tttgatgatg cggcgaataa aattaactta       180
     agtctacggg aagtactact ataagcggta aatttcatac aaaatgaagc aaaaaagatg       240
     tataaatgct catatctttt gatagcgttg tattagaagc ttaatttctg tgctgcaaaa       300
     acctgtaatc ctgaatatct gatatcagaa gtataatggt cttcacagac ggacaaaaaa       360
     gtgaccctat aagggttccg tttttttcct tttgaggtac aaaaccctaa aatggattaa       420
     ttatcttagt ttgcataacg cattaaataa atcataattt aagtgttttg gaaattgatt       480
     tgtttttcat atttaattct ctcaactcaa agccacgcat tgccttgtta ccaaagcgga       540
     gaaatgaaaa tactaaatca aaacaaatta aatca                                  575
//
ID   Helitron-like-3_Hmel repbase;    DNA;    INV; 429 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   14-APR-2021 (Rel. 26.04, Last updated, Version 2)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-like-3_Hmel.
XX
NM   Helitron-like-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-429
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           417..202
FT                 /product="Helitron-like-3_Hmel_1p"
FT                 /translation="YNKAEEFVCLFVCLFVCLFVCLFVCLNAKISGSTGSI
FT                 YFVFVLYESCILQKCYRLYXITLHIYTNKLKYFLI"
XX
SQ   Sequence 429 BP; 177 A; 71 C; 65 G; 115 T; 1 other;
     ctagcggacc cggacgcggc tacgcctgct tgaaatataa gaatataatt tctatagaaa        60
     tataatttca atctagatga aatgctaaaa gtgactatta tatttatttt cataaggatg       120
     aatatcaaaa tgacgcggta acgaacgcgg tcgcgtagcg acgacggttg ttattaacat       180
     ggcagaataa attgcatgtc aaattagaaa gtattttaat ttattagtat atatgtgtaa       240
     tgtaatntta tatagcctat agcacttctg aagaatgcag ctttcataca aaacaaaaac       300
     aaagtaaatc gatccagtag atccagagat cttagcgttc aaacaaacaa acaaacaaac       360
     aaacaaacaa acaaacaaac aaacaaacaa acaaacaaac tcttccgctt tattatatta       420
     gtatagata                                                               429
//
ID   Helitron-like-4a_Hmel repbase;    DNA;    INV; 984 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-4a_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-984
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           856..692
FT                 /product="Helitron-like-4a_Hmel_1p"
FT                 /translation="GSRDEHRILFFSHICNIFVIYQYIKIINLTRNLFRHV
FT                 NNNRRYALLSNGLQSLLF"
XX
SQ   Sequence 984 BP; 385 A; 144 C; 153 G; 302 T; 0 other;
     ctagtgggcc cggacgcggc tacgcccgcg aaaatataag cctaaatcat taaaataagt        60
     taaaaaataa taataagtgg agatttatta ttagaaaaaa tatctgagta accgaaatga       120
     acaaaccaaa gaagtaaaag taactaaagg aaattcttaa tattagaaaa aaaaacctaa       180
     agtttgctgt gcgcgcgtac taaacatttt tctatattaa ataattatta atttttgcga       240
     acaatattaa ataaaatctc aaatgattaa aattacgata ttttaagtgt ataacatcgg       300
     tatagataac cgaactgaga taaattaatt ataagcagca aataattaca taaaaaataa       360
     tagtaattcg aaaatctata aaaatttaca aaatcatcaa agtcatccgc ccgttcgcgt       420
     cggtcatact catattatgc cgcccgaagg ctaggtcatt tggaatcagt cacatcttaa       480
     ttatttatta gaatgttata cagtaaatta taatttccat ctagatgaaa tgctaaaagt       540
     gactattata tttattttca taaggatgaa tatcaaatta tagaaatcat ctaatttttg       600
     ttaatgattt gtataaagag atttgtataa atctatatcg gcgcgcacca tgtatgcatt       660
     aagcaaactc actgtgggtg acgttttctt aaaacagcaa actttgcaag ccgttgctta       720
     gcaacgcgta gcgacgattg ttattaacat ggcggaataa attccttgtc aaattaatta       780
     ttttaatata ttggtatata acgaaaatat tacaaatatg agaaaaaaaa agtatcctat       840
     gttcatcccg ggaccctcaa gtatctctat atgagtattt tatcacaatt aaattagcgg       900
     tttggccctg attgcggaaa agacagacag acagacagac agacagacag agttactttc       960
     gaatttataa tataggtatg gatt                                              984
//
ID   Helitron-like-4b_Hmel repbase;    DNA;    INV; 946 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-4b_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-946
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           427..275
FT                 /product="Helitron-like-4b_Hmel_1p"
FT                 /translation="YDRRERADDFDDFVNFYIFSNYYYFLCNYLLLIINLS
FT                 QFGYLYRCYTLKIS"
XX
SQ   Sequence 946 BP; 370 A; 137 C; 145 G; 294 T; 0 other;
     ctagtgggcc cggacgcggc tacgcccgcg aaaatataag cctaaataat taaaataagt        60
     taaaaaataa taataagtgg agatttatta ttagaaaaaa tatctgagta accgaaatga       120
     acaaacaaaa gaagtaaaag taactaaagg aaattcttaa tattagaaaa agtacctaaa       180
     gtttgccgtg cgcgcgtact aaacattttt ctatattaaa taattattaa tttttgcgaa       240
     caatattaaa taaaatccca aatgattaaa attacgatat tttaagtgta taacatcggt       300
     atagataacc gaactgagat aaattaatta taagcagcaa ataattacat aaaaaataat       360
     agtaattcga aaatatataa aaatttacaa aatcatcaaa gtcatctgcc cgttcgcgtc       420
     ggtcatacta taccactcgt aggctaggtc atttggaatc agtgacatct taattattta       480
     ttagaatgtt atacagtaaa ctataatttc catctagatg aaatgctaaa agtgactatt       540
     atatttattt tcataaggat gaatatcaaa ttatagaaat catctaattt ttgttaatgt       600
     atacaaatct atatcggcgc gcgccatgta tgcattaagc aaactcactt tgggtgacgt       660
     tttcttaaaa caacaaactt tgcaagccgt tgcttagcaa cgcgtagcga cgattgttat       720
     taacatggcg gaataaattg cttgtcaaat taattatttt aatatattgg tatatatcga       780
     aaatattaca aatatgagaa aaaaaagtat cctatgttca tcccgggacc ctcaagtatc       840
     tctatatgag tattttatca caattaaatt agcggtttgg ccctgattgc gtaaaagaca       900
     gacagacaga cagagttact ttcgaattta taatataggt atggat                      946
//
ID   Helitron-like-5_Hmel repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-594
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           330..124
FT                 /product="Helitron-like-5_Hmel_1p"
FT                 /translation="RFFHTNFQPLICTLRGRILENDETRVQLNTFKNLNFK
FT                 FYKNRCRFXFFSIQTLNPYFTPLGLKFFKIPS"
XX
SQ   Sequence 594 BP; 201 A; 92 C; 109 G; 190 T; 2 other;
     tctatatata taaaaggact tgtcctcact gactgaggta agacgcacgc acagccgtaa        60
     ccgctgtgcg tagaaacgtg aaatttggac agatgtttac tttcgtaatc tggacatcca       120
     ctaagaaggg attttgaaaa attttaaccc taaaggggtg aaataggggt tcaaagtttg       180
     tatggaaaaa aanttaaatc ggcaccgatt tttataaaat ttgaaattta gatttttaaa       240
     agtatttaat tgaacacgtg tttcatcgtt ttctagaatt ctccccctaa gggtgcaaat       300
     aaggggttga aagtttgtat ggaaaaatct ttaaaacgcc accgattttt ataaaatttg       360
     aaatttagac tcttaaaaat atttaattga acacatgttt catggttttc tagaattcac       420
     cccctaaggg tgcaaataag gggttgaaag tttgtatgga aaaatcttta aatcgccacc       480
     gatttttata aaatttgaaa tttagactct taaaaatatt tcattgaaca catgtttcat       540
     ggnttattag aattcaccct taaatacgca agcgaagctg cgcgcgtccg ctag             594
//
ID   Helitron-like-6a_Hmel repbase;    DNA;    INV; 1352 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-6a_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1352
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           737..444
FT                 /product="Helitron-like-6a_Hmel_1p"
FT                 /translation="LRWPFNVDQNCLLLFFILISTLEVVTISKNPCCETAR
FT                 HSPCVRRARLPYTHRWFSGRMLACHAGGPGSIPGXCILFNFPHRQPRSACF
FT                 SSGTEYPLQH"
XX
SQ   Sequence 1352 BP; 470 A; 228 C; 245 G; 404 T; 5 other;
     ctagcgaccc tcttgcggct tcgcccgctt ttactactgg attattcata taatgtatgt        60
     ttgcaaagca cttaagataa tgtgaaaatt aattaaaccc taatgcaacc cgcattttcg       120
     tagtttcaat aaggattttc caattgtttt acacagcaag gattttttag taggtaccgt       180
     aattttaaat ctgtgctact aatcttttca agtacttatt aaaatatatt taaatgacta       240
     tttttagata gttaaatgac tatttttaaa cggaagaaat tataaacaaa aacctaccta       300
     ctaataacta ctacaaaaaa trtgaaacca aatatatcgc gctgaaataa tacattcaac       360
     tccaattatc caatacgtgc aaacgcatct aaatcttcgt tgctatagag gcaggcgggt       420
     tthttttttc gagcttgtgg ttaatgctga agagggtatt ctgtccctga tgaaaagcaa       480
     gcactacgtg gctgcctgtg aggaaaatta aatagaatgc atbggccggg aatcgaaccc       540
     gggccgcccg cgtggcaggc gagcattcta ccactgaacc accgatgcgt gtaaggcagg       600
     cgggcvcggc ggacgcatgg cgagtggcga gccgtttcgc agcaaggatt ttttgatatt       660
     gtaacaactt ctaaagtact tattaaaatg aaaaacagta aaagacagtt ttgatctaca       720
     ttaaatggcc aacgtaacta atatacttat ttatatgctg agagtaaggg ataagtgaaa       780
     cttgagtaac atacagctga tgtgtcaacg gcgggatgtg tcaacaatta aatgcgtttt       840
     tctgtaaaac tattcgcaat ttcgaaatag tgtaaaaagc aaattttatc ttcgtttaac       900
     gtagaaaatt aataaagtat tttaaaggat aaggattaat accattatgg aaaaatatcc       960
     ctcacaataa aaaatatatt gaaattatta tttttagaca gaaaaatgat cactacacgt      1020
     tattcttaaa agatacgaat atgctctcgc ggactttttt gtagatctta ttaagaggaa      1080
     caatactcca gtacattttt ttcatgtagt acttaccatt aaagcagcgc atgcgcgaaa      1140
     gtgtctcaac gggtaggact ttatacacat ttatcgtatt tatgttaatt tacataagaa      1200
     tgtacaaata ataaactata tataaacctt ctacgaaaaa cactcgacct aatggtgaav      1260
     accgcatcaa aatccgttgg gtggtttaga agaagaagag ttagaaacaa cagacagaca      1320
     cgaaaagcga ctttgtttta taagatatag ga                                    1352
//
ID   Helitron-like-6b_Hmel repbase;    DNA;    INV; 1343 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-like-6b_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1343
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           729..406
FT                 /product="Helitron-like-6b_Hmel_1p"
FT                 /translation="LRWPFNVDQNCLLLFFILISTLEVVTISKNPCCETXP
FT                 XXYKRVXXXTXIGGSVVECSPATRAARVRFPADAFYLIFLTGSHVVLAFHQ
FT                 GQNTLFSINHKLEKKTRLPL"
XX
SQ   Sequence 1343 BP; 462 A; 223 C; 233 G; 407 T; 18 other;
     ctagcgaccc ccttgcggct tcgcccgctt ttactactgg attattcata taatgtatgt        60
     ttgcaaagca cttaagataa tgtgaaaatt aattaaaccc taatgcaacc cgcattttcg       120
     tagtttcaat aaggattttc caattgtttt acacagcaag gattttttag taggtaccgt       180
     aattttaaat ctgtgctact aatcttttca agtacttatt aaaatatatt taaatgacta       240
     tttttagata gttaaatgac tatttttaaa cggaagaaat tataaacaaa aacctaccta       300
     ctaataacta ctacaaaaaa tatgaaacca aatatatcgc gctgaaataa tacattcaac       360
     tccaattatc caatacgtgc aaacgcatct aaatcttcgt tgctatagag gcaggcgggt       420
     ttttttttcg agcttgtggt taatgctgaa gagggtattc tgtccctgat gaaaagcaag       480
     cactacgtgg ctgcctgtga ggaaaattaa atagaatgca tcggccggga atcgaacccg       540
     ggccgcccgc gtggcaggcg agcattctac cactgaacca ccgatgcdtg tawvnhvvrn       600
     gacgcgcttg tahgdcgrgg gcgycgtttc gcagcaagga ttttttgata ttgtaacaac       660
     ttctaaagta cttattaaaa tgaaaaacag taaaagacag ttttgatcta cattaaatgg       720
     ccaacgtaac taatatactt atttatatgc tgagagtaag ggataagtra aacttgagtc       780
     gatacagctg atgtgtcaac ggcgtgatgt gtcaacaatt aaatgcgttt ttctctaaaa       840
     ctattcgcaa tttcgaaata gtgtaaaaag caaattttat cttcgtttaa cgtagaaaat       900
     taataaagta ttttaaagga taaggattaa taccattatg gaaaaatatc cctcacaata       960
     aaaaatatat tgaaattact atttttagac agaaatatga tcactacacg ttattcttaa      1020
     aagatannaa tatgctntcg cggacttttt tgtagatctt attaagagga acaatactcc      1080
     agtacattat tttcatgtag tacttaccat taaagcagcg catgcgcgaa agtgtctcaa      1140
     cgggtaggac tttatacaca tttatcgtat ttatgttaat ttacataaga atgtacaaat      1200
     aataaactat atataaacct tccctgagaa atactcgacc taatggtgaa aaccgcatna      1260
     aaatccgttg ggtggtttag aagaagaaga gttagaaagt tcagacagac acgaaaagcg      1320
     actttgtttt ataagatata gga                                              1343
//
ID   Helitron-like-7_Hmel repbase;    DNA;    INV; 412 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-412
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           277..110
FT                 /product="Helitron-like-7_Hmel_1p"
FT                 /translation="DTFFSHICNIFDIYQYIKILINLTCNLFRHVNNNRRY
FT                 ATVAKQRFAKFVVRKRHPK"
XX
SQ   Sequence 412 BP; 140 A; 65 C; 75 G; 132 T; 0 other;
     ctagtggacc cgaacgcggc tacgcccgct tgaactatac gaatatttat taaatatatt        60
     tatgaaatta ttttcagttt tcaatagaga gatgcgttaa gcaagctcat tttgggtgac       120
     gttttctaac aacaaacttt gcaaatcgtt gcttagcaac ggtcgcatag cgacggttgt       180
     tattaacatg gcggaataaa ttgcatgtca aattaataag tattttaata tattggtata       240
     tatcgaaaat attacaaata tgagaaaaaa aagtatccta tgttcatccc gagaccctca       300
     agtatctcta tatgagtatt ttatcacaat taaattagcg gtttggccct gattgcgtaa       360
     aagacagaca gacagacaga gttactttcg aatttataat ataggtatgg at               412
//
ID   Helitron-like-8_Hmel repbase;    DNA;    INV; 3792 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3792
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3208..3555
FT                 /product="Helitron-like-8_Hmel_1p"
FT                 /translation="RHTISDKKIMNNVIEAIIXKGKYKGEDFLIXRIPMIS
FT                 TDIPFELKRLQFPVRLAFAMTINKSQGQLLSVCGINIENSCFSHGLLYVAC
FT                 SRVGKPSALFVYAPDNQTKNNVYHKVLQ"
XX
SQ   Sequence 3792 BP; 1290 A; 592 C; 634 G; 1250 T; 26 other;
     atctatatat ataataaaac tgtaaagggg gtaaaatctg tacattgaat ataaactaaa        60
     aaaaacactt cagggggact caatacaact aatagaaggt aaaaatatga tttttggaat       120
     tcttgtctgt ctgtctgttg tgactcttta actcaaaaac tactggacag atttaaatga       180
     aacttctttt gttgcatagc tattagtctt cggcaacata taggctataa tttattttga       240
     tagtccgaat acctgatgtg agaccctagc agcccgccta atctataaga gatatcaata       300
     caacgaatta ggaaaagtta ttcaacgtga tgagcatttt ctgttgacat aaaaaaaaat       360
     tggatccaat gtggaacccc agtcacccag ctaaacttta twacatataa ttcgtcagtc       420
     gtcttaaaat aaattattct acgtaataaa catttgtttt gacgtttacg taataccata       480
     attattattt aaaatggttc aacaccaaat gatataaatt taagtaaata tttttaataa       540
     atatatacaa attaaataaa atttaaaaag aaaatccata aatcggtaac atatatgtgt       600
     atcacagata aaaaadatta hattcttata attttgaggc ccgttgtggc gcagtggcac       660
     aagcaccgga ctgtatacac gacaggttct gagttcgatt cctacttgaa gaaatgaaat       720
     atttaatatt ttcattacct cactctggaa sgaggcaaaa gtaattttat aatatcaaaa       780
     caatatacga aatatcttct tttttataaa aattaatcgc tgaatgtgtt gctaagcgca       840
     aatctcgaga gcagctgaac cgatttcggt aattcttttt ttataatatt ccttgaagta       900
     cgaggatggt tctaacggac agaaaaaaat taaaahttac cagaaaaggt ccaaaawcat       960
     gacttttcta tattcccata caaaagattc gtattaatat ctacttaaaa gtcaatttgg      1020
     actttaatac actactataa agtttaaatg ttagtagctg gattcctgga aggcaaaaca      1080
     attgagtgac gttagtatcg tataaatatt atagcccaag aacccagagc tgccagaccg      1140
     acgtcatttt agcaaaggtg aaattttgag gactattagt cttacatgta gttaagacag      1200
     tatgcttact cactaacttg aaaatgggat cctttcagag gtagagaaaa ataacggtat      1260
     atctctttyt ggvaaaatga taaagccatc ggattgatct ggttgcttag ggtctggggc      1320
     tagaggggtc ttgaaatagt ccgtaaataa tatatthtaa attttagatt tactttaatg      1380
     taatttgccc caattttaaa gaacctttat gacgtctggc agaagtaaag gtccacgtga      1440
     aagaatgtga aatatacatt ttttacttta aaacatatat aaaaactctc ttccttactt      1500
     aagggagcgt tttcaattga cacttccaag tgaaagacct gtacgctcat gtgtaactct      1560
     aagaaagctt gagtgcccta tatttaatac ctctttctat gaaaaatcct tcacagttca      1620
     agcagtgcgc ttatggaact cactacctaa ctctatactg tcgggcaatc catctctaaa      1680
     tactattaaa atcaaattaa aacaacattt cttaatctca attagaatct ttagtagtcg      1740
     ctttgtcttt tttttattaa ttttcttttt ctgtttcaac tcttttatgt cattgtatat      1800
     atttatgtag gtatagtaat attgattaat attatgtata tttgtatgta ggtttattat      1860
     tattattaac attatattaa aataccgcac ccgaatcatt tcttttaaca tcccctacat      1920
     tcaagggttt ctggtagaga tctctattag agataagtta tccattgtac acattttttc      1980
     tgttdtcata agttttctgt actttctttm ttgtgtggta cataaataaa tgagaaaaaa      2040
     agagactttc tdctttaacg caactggaag tgtgctttaa gttggcacta tctctgaagg      2100
     ttttttaagt tagagagtat gcatacagtc ttaagtacat attagactat caatcctcaa      2160
     aatttcagct ttgctaaaat gatgtaggtc tgggggccct gggatctcag tctattaatg      2220
     tcaatatttg tcaatatttc tatggtaaga tgtcahttga aatgtaaacg tctcattgtg      2280
     cgtctatatt aytaaatcta aaagccacaa attttataaw attaataaag tgttgtgtat      2340
     ttgtgactta ctaaatatgc cttctataag gcggtggaca aatttagnca gaagaatcta      2400
     atcgtactcc cagaacgtga adattgcaat gaacgtgagc acgatagttg actgataatg      2460
     gtgcaaattt gaatcgagct gctttttgtt acgatatatc aattgatgcc agcagtgcct      2520
     acagctgtgt tgctattgga hctatgaact cagcttgcca atattgtaag gttattgtaa      2580
     aaactcagtt tgccaatcaa tttggtggcg caatgatttt attataagga ggaggattgc      2640
     cagtggttcc acgttcaatg caagctgatg aactgaattc atgtttaaag tcctcgaaat      2700
     tgtggaaaca tgtcaaggta ttacatttaa gcaagaatat gcgtgtcatg ttgcaaaatg      2760
     atcaatctgg agacatattc tctaaacaac tcattgatat tggtaatggc aaacttccta      2820
     takatgcgct gactggctgc atcacctttc ctgatagttt ttgtcagtta acgtaatcaa      2880
     aagatgaact cattcataaa gtgcttccaa atgttgctga aatgttgctg attatttatt      2940
     ccataattgg ttgagcgaaa gagctttact ggctgccaaa cacactgatg taaatgaatt      3000
     aaatataaat tttcaagatg gcattcctgg caaaataagg acacataagt cagttgatac      3060
     ggcaactaat gaagatgatg tcgtgaacta tccaccggaa tttttaaatt cacttgattt      3120
     gccaggattg ccgcctcaca accttcaatt aaagcttgaa tgtgtagtta taatgttgcg      3180
     aaatattaac caactgaaac tttgtaacgg cacacgatta gcgataaaaa aataatgaat      3240
     aacgtaatag aagcaatcat attdaaagga aagtataaag gagaagactt tttgatahyn      3300
     cgcatcccaa tgatttcgac tgacatacca ttcgagctta aaagactaca gtttccagta      3360
     cggcttgctt tcgcaatgac tataaacaaa tcccaggggc agttattaag tgtttgtggt      3420
     attaatatag aaaactcatg tttctcgcat ggtctrttgt atgttgcctg ttcccgtgtt      3480
     ggaaaaccat ctgctctgtt tgtttacgcg ccagataacc aaacaaaaaa taacgtgtac      3540
     cataaagtac tacaatgaaa atgaaactga atttagaata agtaaaaata aaataaaata      3600
     taataagtag gcatcataat aagatatcgg aaattgttat ttttattatn atttttaatg      3660
     aatattataa gaattaaaaa tgatttaagt ttttattttt ttatcttact agctgacccg      3720
     gtgtcgcnaa tagcagaata catattaaaa aaaatcgact gttaggcgat acgaagttcg      3780
     cgggtctgct ag                                                          3792
//
ID   Helitron-like-9_Hmel repbase;    DNA;    INV; 697 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron-like transposon from Heliconius melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Helitron-like-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-697
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           640..491
FT                 /product="Helitron-like-9_Hmel_1p"
FT                 /translation="LKWIEGHLKRIIESKNXFFKFLVCLSVCMITLISEST
FT                 EPIYLKLSPIALF"
XX
SQ   Sequence 697 BP; 256 A; 100 C; 100 G; 237 T; 4 other;
     ctagcggccc gcccgcggct tcgcccgctt gaactacatd attattcatt taataaacag        60
     aattgactga cagtcaaatg tgttgatgtc aatgaataat ttaatttact cgttcagaaa       120
     cagccttaaa tgttaaatta ttgatttggg taaggattta taatattctt tgtaaaataa       180
     ctgtaatgat tgcatattac aaaaaatacc caaatcgaat cgaataatcc aatatcgaaa       240
     tcgaatncaa aataattaat cgaatatcga atcgaaaata tttaattgag aacctcctcc       300
     ttgttttgaa agtcggttaa aaatacagat ttattacaaa caaatacaga tttattataa       360
     gtataagtat agatatggat tgctatatat ttgcaggcaa actcatgcct tgagttcatt       420
     caaatghcga taactttttt tttaatgaac cgattttgat gaaacaaact ttagatgtta       480
     agttgagtta aaacaaagca attggtgaaa gttttaagta aatcggttca gtactttcgg       540
     agattagcgt gatcatacat acagacagac agacaagaaa tttaaaaaah atatttttgc       600
     tttctattat tctttttaag tgtccctcta tccatttcag tcaaaaatac taaatgtaca       660
     gacaaaatat ttttactgtt ttattatata tagagat                                697
//
ID   Helitron-N10_LMi repbase;    DNA;    INV; 1726 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.12, Created)
DT   28-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1726
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3240-3240 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1726 BP; 583 A; 260 C; 366 G; 517 T; 0 other;
     tctctatata taaaaggcaa tgtcccgact gactgactac tgactgactg actcatcatc        60
     gcccagccca aaccactgaa gatagaaact tgaaatttgt agagggtgtt gatcttactc       120
     tgtaggcgtc atttaagaag cgatttttcg atattccgtc cgtaaggggg tgaaataggg       180
     gatgaaacgt tttttgaaaa tacgttgcta tttaggcaat tttgaagcta gaactacaaa       240
     atttcggatt ttaattcagg gttcgaattt aaaagacacg tgtttcggca ttttttgaaa       300
     ttcaaccaat aagggggtaa aataggggac gcaaaaaatt gattttcaaa aatatgttgc       360
     tgttaactca aattttaagc tacaactacg aaacttcgga tatggaatct tggtcaggat       420
     taaaaaaaca cgagtttcag tatttttgga aattcaacaa gtaagagggt aaaatagggg       480
     atgaaaaatt ctttttgaaa acacgttgct attcagacaa ttttgaagct agagctgcaa       540
     aaattgatat ttgtattgtt ggttagaatt taaaaaatac gtgtttcggt atttttggaa       600
     attcaaccat aaagggggtt aaattggaga ggggatgttt ttcgaaaatc tgttgctatt       660
     taggcaattt tgaagttaga actacaaatt ttcggatttg gattcggggt tcgaatttaa       720
     aagacacgtg tttcggtatt tttggaaatt cgaccaataa gggggtgaaa tacgggatgc       780
     aaaaattgat tttcaaaaat atgttgctgt taactcaaat ttcaagctat aactacgaaa       840
     cttaggatat ggactcttga tcaggattaa aaagacacga gtttcggtat ttttggaaat       900
     tcaacaacta agggggtaaa ataggggatc aaaaattctt ttcgaaaaca cattgttgtc       960
     aagacaattt tgaagctaga gctgcaaaaa ttggtatttg tattgttcgt tagaatttaa      1020
     aaaatacgtg tttcggtatt tttggaaatt caaccatcaa gggggttaaa ttggagaggg      1080
     gatgtttttc gaaaatcttt tgctattaag gcaattttga agctacaacc acataaattg      1140
     gtatatgttt tcttggtcag aattaaaaag acacgtgttt cggtattttc agaaaattaa      1200
     tcatttaggg ggtgaaatag gggatgaaac attttttgaa aatacgttgc tactaagcca      1260
     attttgaacc cagaattaca aaaaaatgat atttgcatac ttggttggaa tttaaaagac      1320
     acatgttggg gtatttttcg aaattcaact attaaggggt gccatagggg gttacaagta      1380
     gtaaaatcaa atgttcaaat gtttgtaaat cttaagagac ttaactacgg ggtcatcagt      1440
     ccctaaggct tacaaactaa ttaaactaac ttagactaac ttatgctaag gacaacacaa      1500
     acacccatgc ccgaggggcg aatcgaaccc ccgacggcga acagcagcgc gcaccgcagc      1560
     atggcgcctc aatacgcacg gccattctgc cgcggctaca agtagtatca caacatttca      1620
     ttatgatagt acttaagcta tatctatgaa aatttatatt aagagggaga aacaactggt      1680
     gcagaccaac cagcctacgc atgcgaagca gcgggcgtta agctag                     1726
//
ID   Helitron-N11B_LMi repbase;    DNA;    INV; 3369 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.12, Created)
DT   06-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N11B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3369
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3241-3241 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 3369 BP; 1082 A; 643 C; 619 G; 1025 T; 0 other;
     tctatactaa taataaatct gtaaatgtag gcctgtcgct gttcccttca atcttcaaaa        60
     ctactggacg aatcttcatg cggttttcac aggaaacatg agaaaagttt gggtcaacat       120
     ataggcataa ttttatcaaa atcggatcac gagaaaaaaa aagatatcgt aattttaagt       180
     gttttcagta accgtcgtgt ctgttttttc aactattaaa aacctcttat ctccaaaact       240
     acttcacgaa tttgcatggg gttttcacag gtaacttgag cgtaactgga caatatatag       300
     acttcgtttc ataaaagtcg gatcacggaa aaaaagaata tcgtaatttc aattttttat       360
     ctacgaccgt tatgtctgtc tgtctctttg aacacgtata tctccaaaac tacttgacga       420
     attttcatgg ggttttcaca cgtaacttta gaacatcgtg cggttacata aaggcttcaa       480
     taattaaaat cggatcacag aaaataaaga tatcataatt taatcatttg cttaaaagcc       540
     atcgtgtatg tctatttgtt gagggtaatc tccaaaagta ctacacgaac tttcatgggt       600
     ttccacaggt aaattgagaa tagtttggag agtaacatag gcttagtttc atcaaaatcg       660
     gatcagagga aggaaagata tcgtaatttg aagtttttgt gtatactatg cttataagta       720
     tggtgtagta cagcaaatct ccaagagtac tacacgaact ttcatggggt ttcataggtc       780
     aactgagagt accttggcgc aacatataag cttcatttca tcaaaatcgg atcaggggaa       840
     gaaaagatat cgtaatttgt agtttctggt gtatgctatg cttgaattgc agcgtagtat       900
     agcaaagatc cgatagaggc gctgttactg acatagtata ccaaataact aatagatggc       960
     gatgctgcgt tgtttattct cataactaaa gtgtaataca ctgaaacaag ggctatgatt      1020
     ttccttacgg cagcggtgta gtgtattgat gttggtaacg gccgttgaat cctttttgaa      1080
     aaatcagtca cgtacaatga ggggaataat tcttagtgtt gataatgaaa taaataatta      1140
     atgttgttcc gatcagtaaa ttaatgatcc ccctaaagcg aatatttcgt tgccaacgtt      1200
     aacatactaa accgctgcca ctgcaagtaa aatttaaccc aggtacggca caaaaaaata      1260
     atttttacta gctgtatccc gcatgccttg caatgccatg gaaagaaaaa aaagtgcttc      1320
     tttccgcggg tatcatttga atttaaaaca taacgacatt ccttcgcgtc tatcgatgct      1380
     ctaatttaca taagaattct ttgcaaggaa aatggaattt atgtagttcc ctttctgatt      1440
     tcggtgtatc ctcattacat tttgagtgcg ttctgtttag gaatgcctcg aaaacgccat      1500
     agtacaggaa aggacaaagt gaggcgacgt tagttacata gtacaccaaa taactaatta      1560
     tggcgttgct gcgttttttt cattctcata actatggtgt aatacactac aagaaggggt      1620
     acaattttac ttacggcggc ggcgttgtgc gctgatgttg gcaacggccg ttgaatgctt      1680
     tttcaaaaat cagtcacgta gaataagggg aataattctt tatgttcacg atgaaataaa      1740
     taatttatgc tgttctggtc agtaaattaa tcatcctcct aaagcgaata gttcgttgcc      1800
     aacgatagca aactaaaccg ctgccactgc aagtaaagtt tagcccaggt aggacacaaa      1860
     aaattttttt ttcttcctag ctgtatccca tatgctttgc aatgtcatgg aaagaaaaga      1920
     agtgcatctt tcgacgggta taaccactaa attatacata gagtagaaat atctatggag      1980
     tgagcattgg cttctgtgca tcttctcaac attaagctgg aattaccaag tgatactgag      2040
     acaaatccac tctttccaca catttatttg ctcttaggat tggtttgtac cgcattggct      2100
     gcaaagaagc cccacctcct tttcgcagag caaccacgta acatgaaata atatctaaat      2160
     aaatgtgtca cagaagcaac aagaaagttg aggaagcgtc gctaaaaggg ccatttacac      2220
     atagtcatcc gtcttaaccg aacaaaaaag gaccaagatg aagtcatcga ttagtagatt      2280
     tttcccaata tcaggtgata tttccacctt aatgttgagg acagaaaatc tgttctgcgc      2340
     atctgaatgc tcactccaga gatatttctg ctctgtgcct gccactagag ataatataca      2400
     cacgcgagcg acaaactcat cagaaacctc cctgctttca taattgttcg gtacaatatt      2460
     gtgattaaaa tttgtaatta cttacttttg gtgcggacta cattaagata gagaaagacg      2520
     tcttcttttg cagagacaat tgtacttaga gttataatcc gacttctgaa tatatagttc      2580
     tattacacaa gatcgatttc aacttcgtgc tttacgaagt aatcactgca ggacgtgagg      2640
     acatgtatta gctgaaagag tggccgatgc tgctaacaca gtcaagacaa ttcactggaa      2700
     atactactat atttaatgga aagttctata cagacgatca gctgacgcca ttccttcaac      2760
     gattacccag acttacttta tcgcacattg acaccaccat gacgtcttat ttaaacagac      2820
     atgaactgct ctgttgattg aattaccaga ctttcagtat tcgtcgactt ttcgataata      2880
     tggagcactg catacagaat aactacattg tccccagtgc aacactgcaa cattctaata      2940
     cttcagcata cacttactgt gagagataaa cagtttagta ctacgccata gaaccaatac      3000
     atggcgctgt tattattatt actatttctc atctcaacga tagaagtgtt ttcagaagtt      3060
     tatgccagac agacaattac acacctcagt cttaacttta tgaacacaaa ctaacaatga      3120
     atttacatcg ttccggagta cggacttaaa ttaatttcac tttttgtatg aaaaacttta      3180
     tgaacattca tcgttttcga caatgacttc tacttaaatt tgacatcttg gctaggagaa      3240
     ctgagtttat tgacagagcg atccaacaag gattctgttt ttgctgacct aggtccggaa      3300
     ccctaaaaaa ccatgatata cacaggtccc tctttaacaa ccgttgcgaa gcacgggcat      3360
     ataagctag                                                              3369
//
ID   Helitron-N11_LMi repbase;    DNA;    INV; 2716 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.12, Created)
DT   03-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2716
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3242-3242 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2716 BP; 881 A; 498 C; 535 G; 802 T; 0 other;
     tcaatataca tatataaaaa tggaacgtgg gcgtgtgtcc gtatatttca cttggtagcc        60
     aaaattattc actgcagacc aatggcggtt atgcatgaga gagcctttag gttcgcggtg       120
     tgcactatgg tgttttggtc gcggtgtgtg gcggtgggtg agtgtggcga acaaaaatcc       180
     gtaaaatgtg gagcaatacg acgatcaaca gatgctcaaa gataaaaaga ctcaaagata       240
     aaacactggg aaacacagac atacattaac tgagcattaa ctacactggc aattcacaat       300
     gatctcaata taaacactgg aaagacaact gtagtgctta ggatcaaaat actgacaact       360
     ggattagaga gacaaatagc ctatacgtcg agcgtcacgg tttcataata catagtacca       420
     tctccatatt atctttgagc tcactgcaat acacagactg tagacatacg ttaatgtatg       480
     tctgtgacgg aaagttcgta agtcataggt tactttggtt tagcggacag tatcgcgtta       540
     ctaacagatt aataccattc atttaggtga gtaattaaca tctgtgtttg tattctttat       600
     tttagctttt ctagagcaat aaataaatgg ttgaactgca tttaatgcgg cccggctagc       660
     gctcgctagg tggcgtcgcg tgtaccgatt cacagggaat gagaagatta ctaatttact       720
     aaccggacaa gggtacgtcg agaacttgcc aaccatagag caggaacagc aaaccgattc       780
     acagggaatg agaggaattg tctttacgcc acctagcgag cagtagccgg gccgcattaa       840
     atgcagttgt accaaatact tttaggaaaa gctacgtact ccgagactta cgaagtttat       900
     cgtacatgtg aaaatacggt tactgtataa ttcttaaatc gagatagatt caaaggaaaa       960
     cacagacata cattaactac acaggcaata cacagactgt agacatacgt taatgtatgt      1020
     ctgtgatgga aagttcgtaa gtcatatata agtatatgct gctcaagtgg taaaattgca      1080
     ttgccagtaa caaaattacc tccatgtgaa ttctttgaat atatttacat aagaattctt      1140
     tgcaaggaaa atcgaattta tgtagttccc tttctgattt cggtgtaggc ctatcctcat      1200
     tagattttga gttcgttatg tttaggaatg cgtagaaaac gccatagtac aggaaagaac      1260
     aaattgagga gatgttagtt acatagcaca ccaaataact aacagatgcc gatgcttcgt      1320
     tttttcattc tcataactgt ggtgtaatac actacaacaa ggggtacaat tttacttacg      1380
     gcatcggcgt actgcgctga tgttggcaac ggccgttcaa tgctttttga aaaatcagtc      1440
     acgtagaatg aggggaataa ttctttatgt tcacgatgaa ataaataatt tatgctgttc      1500
     tgatgagtaa attaataatc ctcctaaagc gaatagttcg ttgccaacga tagcaaacta      1560
     aaccgctgcc actgcaagta aaatttaacc cagctgtatc ccacatgctt tgcaatgtca      1620
     tggaaagaaa agaagtgcat ctttcgacgg gtataatttg aatttaagaa gtaacgacgt      1680
     tccttcgcgt ctattgatgt tttcatttaa taagaattat ttgcaaggaa aatcgaattt      1740
     atgtagtttc ctttctgatt tccgtgcgtg cttattagat cttgagtccc ttctctttag      1800
     aaatgcctag aaaacggttt agtacagtaa agaacaaata gaggccctgt tagttacgta      1860
     gtacaccaaa taactaatag aaggcaatgc tgctttttta tgctcataac tatggtgtag      1920
     ttctctacaa gtgattgtat cctttcttta atatccgttg cgaagcacgg gtgtacagct      1980
     atctattaca aatctctaat ctcctaaaat acttcacgga tttacatggg acaacttcgt      2040
     ttcataaaag ggggatcacg gaaaaaaaag aaaaagaaag atatcgtaat ttaaagtttt      2100
     gtatctacga ccgttatgtc tgtctgtctc ttagaacacg tttatctcca aaagtacatg      2160
     acgaattttc gtaggatttt cagccgtagc ttgagcatat cgtgcggttg gatacacgtt      2220
     tcatttcatc aaaatcggat cagagaaaat aaagatatca taatttaaac atttgtctaa      2280
     aagcaatcac tatctatctg caaaggccaa tctccaaaag tactacacga gctttcatgg      2340
     gggctaaaaa gcaaaggata catggcgctg ttattattat tactatttct catctcaacg      2400
     atagaagtgt tttcagaagt ttacgccaaa cagacaatta cacaccgcag tcttaacttt      2460
     atgaacacaa cctaacattg aatttacatc gttccggagt acgggctgaa attaatttca      2520
     atttttgtat gaaaaacttt atgaacattc atcgttttcg acaatgactt ctacttaaat      2580
     ttgacatctt ggctaggaga actgagttca ttgacagagc gatccaacaa ggattctgtt      2640
     tttgctgacc taaaaaacca tgatatacac aggtccctct ttaacaaccg ttgcgaagca      2700
     cgggcatata agctag                                                      2716
//
ID   Helitron-N12B_LMi repbase;    DNA;    INV; 3079 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 19.12, Created)
DT   04-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N12B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3079
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3243-3243 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. The sequence has hairpin at both
CC   ends, and short non-symmetrical TIRs.
XX
SQ   Sequence 3079 BP; 921 A; 594 C; 616 G; 947 T; 1 other;
     tggcccactt taggttacgg tagtaacact aaaagtgggc ctttgcgatc gtcttttgac        60
     agctcgaaat ttaaatgaaa ataacggctt aaccattcat ctgacacgaa aattgaataa       120
     ccgaatttgt agaggagaaa attctctaca actttgctct cttatgtttt tttcatatct       180
     cgtatcgttt cagagatatt tgcaaaaata acggcgattt tgggatgtct gtctgtccgt       240
     aacgtgttcc cactttttaa gtcgaaccgt tcaaccgatc ggcaccaaat tttacagaca       300
     taattgttgg ccgccagaga ccagaacctc cctttttcaa atatttcgga caaaaaatac       360
     gttagtaaca ccaaaaaaag ccgtttgtaa tgtaatttta attgcaaata aaccgttcat       420
     ctgacgcgaa aattgaataa ccgaatttgt agaggagaaa attctctaca actttgctct       480
     cttatgtttt tttcatatct cgtatcgttt gagagatatt tgcaaaaata acggagattt       540
     gacaccctcc attgaattaa cgaaaaccag ccgttcggag atgtcacgtg acattcctcg       600
     cccagaactc tctctggcat acgccatctt gcgttgcgta tttgatgatt ttcttattgt       660
     aacttacacg ttgtcatttc aaagcaatgg cgcactgaag aattaacaaa aacacgtcgt       720
     tcttcgtacg ataaatgata atctagtgtc taaaaatgcc atattagcat cagttaacaa       780
     ctgccatcaa tagtacgaga ttaaaggacg caacttgtaa ttgttagccg tagtgtagtg       840
     ggcagcgcgt tggactgtaa tgctcatggt cagtggttcg gaacccacca ctacccaaaa       900
     attttttttt ttcctaaaag ggtttcgggc actcttatta attaaataga gctatgttct       960
     tcaatgttta gagttgtgca tatgtaagaa tgctccctct aaaatgcgtg tttgttctat      1020
     ttcgtgaaca tgccgtgaaa tacgtaacaa cgaattgaac aatggtcttc tgaagcatat      1080
     gcacgtaaac tgggaggata ctgtaataat gaacattctg macaaagtgc tgatacaggt      1140
     agtttcgtat ataaaggaag tcccagattt ctgtggcaag tgtagttcct taatgaaacg      1200
     gaagggaagt gtatacattg caacaaatta ccttgtttat ttttttctaa gcgtttattc      1260
     actatttatg gaatatattg aaagtcatta attagaatca atgcatctac taaaatgttt      1320
     gtctttgaca tggttgctat ggacgctttt aacgtagatg gtattacctt tcctgtagtt      1380
     cagatatgac ttcgttcatg ttactctgtt ctgcgctaaa ataaagagca aatattctat      1440
     ttcaaaccgt gattacgttt tcttttacag ctaaaatcac aaacggaata agtgtggtaa      1500
     tactgaattc cacataactc tagtactcaa taatatatat atacaaagtt agtactatca      1560
     atacgtcatt tacaacagtc attgtaacag tatctcccca gtttatgtac atgtgataaa      1620
     gaagtctatg tttacaattc gttgctatgt atttcatggc atgttctcga aacagaacaa      1680
     atgcactttt cagagaaagc gctgttacct ttgaacaact cggaatcttg cagaatacag      1740
     ttgtgttcag ttaacaagag tgtgcgaaaa ccttttagga agcaagagga aaaataaagt      1800
     gggccaaaaa aattgacagt ggtgtttttt cttcagtgag atcgatgctt tgcggtcgtt      1860
     tgttcatatt cgttctgggt tgttcgttga gaattttact cagtttttta ttacagatgg      1920
     cgttgaacca acaccgtctg aagagaaggc ctgtgcactg ccgtgccacg tcacgtcacg      1980
     tcacgcagag taggtcgcga tcgcgtagct cactggctgg ctgatggggc acagcccacc      2040
     gcctcacagc ggccagccag tgagctacgc gatcgcgacc tactctgcgt gacgtggcac      2100
     gggagcgcac aggccttctc ttcagatggt gttagttgaa ccgtctttcg ttttctctct      2160
     tttcattggt tcttcggttt gaacgggtac tttgtggacg ttggtttgtt ttgtcctatt      2220
     ttgatcgttt cggataactc agttttctcg ttacagaggg cgtcgagcta ccatgccggc      2280
     aaccctctga ccgagcgcgc tgagccaccg cgccctagca agttccgaac caccgtctaa      2340
     catgttcgta catcacaaac taattcctcg cctattacgc tatggcgaac agctgcgaga      2400
     gtaatccgtg attctcgtac catcgatggc aggtgttaac taactaacca acattagatt      2460
     ataattcatt gtcctaagaa cgacgtgttt ttgataattt tcagtgcgcc attgctttga      2520
     aatgacaacg cttgagttat aataagaaaa tcatcaagta gagaaagcaa gatggcgtac      2580
     gcaaaagaga ttttggggcg agggatgtca cgtgactgat ttacgaacgc caaatgtacg      2640
     ctgtgttcca tccaggctat agtcactcgt ccgaacgcca aatgtacgct acgttcgttc      2700
     caggctatag tcattcgtaa ccagtacagg caaagaaaat aaactttgaa ctaccaaggc      2760
     aagacaggtg ataatatttt aacggaaaaa tataatgaaa atgtgggaga gatattaaaa      2820
     tgatagttca aagaggtaaa agttcaaaaa agagtatgtt tgtcaaagct aaactcaaat      2880
     atcatataat tttggctgtt tgttaaaata cggtcagaaa gaatattacg tgttgggtgc      2940
     atagatatta ccacaatagt agagtcgtaa tcatatcacc ataatttttt attatttaga      3000
     ttattatttt ggtccaaaat gtttgcaaaa acttataaaa ctacaaatct aaagtgggcc      3060
     gtaaaacacg tcagtgcga                                                   3079
//
ID   Helitron-N12C_LMi repbase;    DNA;    INV; 3049 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 19.12, Created)
DT   04-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N12C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3049
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3244-3244 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. The sequence has hairpin at both
CC   ends, and short non-symmetrical TIRs.
XX
SQ   Sequence 3049 BP; 899 A; 563 C; 587 G; 1000 T; 0 other;
     tggcccactt taggttacgg tagtaacact aaaagtgggc ctttgcgatc gccttttgac        60
     agctcgaaat ttaaatgaaa ataacggctt aaccgtcatc tgacacgaaa attgaataaa       120
     cgaatttgta gaggagaaaa ttctctacaa ctttgctctc ttatgttttt tttttcatat       180
     cttgcatcgt ttcagagata tttgcaaaaa taacggcgat ttgacgatgt ctgtctgtcc       240
     gtaacgtgtt cccacttttt aggtcgaacc gttcaaccga tcggcaccaa attttacaga       300
     cataattgtt ggccgccaga gaccagaacc tccctttttc aaatatttcg gacaaaaaat       360
     acgttagtaa cactaaaaaa agccgtttgt aatgtaattg taattgcaaa caaaccgttc       420
     atctgacacg aaaactgaat aaccgaattt gtagaggaga aaattctcta caactttcct       480
     ctcttatggt ttttttcgta actcgcaccg ttacagagat atttgcaaaa ataacggcga       540
     tttgacaccg tctcttgatt ttacgtaaac caggcgttag gaaatgtcac gtgacattcc       600
     tcgcccagaa ctctctctgg catacgccat cttgcttcct gtattttatg attttcttat       660
     tataacttac gcgttgtcat ttcaaagcag tggcgcactg aagaattaac aaaagcacgt       720
     cgttcatagt acgataaatt ataatctagt gtctaaaatg tcattttagc tgttagcaac       780
     tgccagcaat agtacgagaa ttaagggaca cttcgtatgc gccgtggtgt agtgggtagt       840
     gcgttacgtt gtgatgcatg tggtcggtag ttcgaaaccc gccgatacca tttttttcgc       900
     cttggctcct aaaagggttt ccggcactct tattaattaa atagagctat cttctgcaat       960
     gtttagagtt gtgcagatgt aagagtgctc cctctaaaat gtgcgtttgt tctatttcgt      1020
     gaacatgccg tgaaatacgt aacaacgaat tgaacactgg tcttctgaag catttgcaca      1080
     acaacgggga ggatactgtg ataatgaata ttctaaacaa cgtgctgata ctggtagttt      1140
     catatataaa tggagtccta gatttctgtg gcaactgtcg ttccttaatg aaacggaagg      1200
     gaagtgtata cattgcaaca aattacctgc ttttttttcc taagcaatta ttcactatta      1260
     atggaatatg ttgaaagtca ttaattagaa tcaatgcgtc tactaaaatg tttgtctttg      1320
     gcatggttgc tatggacgct tttaacgtag attgtattac cttttctgta gttcagatat      1380
     gactttgttc atgttacttt gttctgcgct aaaataaaga gcaaatattc tgtttcaaac      1440
     cgtgactacg ttttctttta cagctaaaat aacaaacgga ataagtgtgg taataccgaa      1500
     ttccacaaag ctctagtact taatctatat acaaagttac tattatcatt acgtcattta      1560
     caacagtcat tgtaaaagta tctccccagt ttgtgtacat gtgataaaga agtctatgtt      1620
     tgcaattcgt tggtatgtat ttcatgatat gttcacaaaa tagaacaaat gcacttttca      1680
     gagaaagcgc tgttaccttt gaacaactcg gaatcttgca ggatatagtt gtgttcaatt      1740
     aacaagagtg cgaaaacctt ttaggaaaca agatgaaaaa aatgccagtg ggtttttatt      1800
     tattattttt tatttatatt ttttgttctt caggtagatc gatgctttgc ggtcgtttgt      1860
     tcatgttcgt tctgggttgt tcgttgagaa ttttgctcag tttttttaat tacagatggc      1920
     gttgagccct ctttcttttt ctctcttttc attggttctt cggtttgatc ggtcctttgt      1980
     ggacgttggt ttattttgtt taattttgat cgtttcgtcg ttgactcagt tttttcgtta      2040
     cagagggcgt cgagcactct gaccgagcac gctgagctac cacgccggca accctctgac      2100
     cgagcgctct gagccaccgc gcccggcaag tttcgaacca ccgtctaaga tgttcgtgca      2160
     tcacaaacta attcgctgcc cattacgcta cgccgaacag ctgcgagagt aatccgtaat      2220
     tctcgtacca tcgatggcag gtgttatctg ctaacatggc atttttagac attagattgt      2280
     aattcattgt cctaacaacg acgtgttttt gataattttc agtgcgccat tgctttgaaa      2340
     tgacaacgct tgagttataa taagaaaatc atcaaataca gaaagcaaga tggcgtatac      2400
     aaaagagagt ttcgggcaag gtttcgggcg agggatgtca cgtgactgat ttccgaacgc      2460
     caaatgttga gcacctccat aaaaccaacc agacatgtgg tggttattat tttatgtata      2520
     ttttactgtt ttaattttga ccagccatcc attttatatc tatccaccag cacatgattt      2580
     tctatataac tatcatccag tacacctacc agattttatg tggagataag cagtttaatg      2640
     tcaatgagac cagatgatga caccataggt tcgaaaccgg tcgtcttgaa taaataaaat      2700
     aaaattgcga tcttggcatc tatcctattt atacaataag atcgttccct aagatgagta      2760
     aattaagtga taatgaaaat gtgggagaga tattaaaata atagtttaaa gaggtaaaag      2820
     ttcaaaaaag agtatgtttg tcaaagctaa actcaaatat caaataattt tggctgtttg      2880
     ttaaaatacg gtcagaaaga atattacgtg ttgggtgcat agatattatc acaatagtag      2940
     agtcgtaatc gtatcgtcca taatttttat tatttgtgtc cgaaatgttt gcaaaaaatc      3000
     ataaaactac aggcaaatct aaagtgggcc gtaaaacacg ccagtgcga                  3049
//
ID   Helitron-N12D_LMi repbase;    DNA;    INV; 1345 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.12, Created)
DT   06-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N12D_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1345
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3245-3245 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1345 BP; 416 A; 267 C; 239 G; 423 T; 0 other;
     tggcccactt taggttacgg tagtaacact aaaagtgggc ctttgcgatc gtcttttgac        60
     agctcgaaat ttaaatgaaa ataacggctt aactattcat ctgacacgaa aattgaataa       120
     ccgaatttgt agaggagaaa attctctaca actttgctct cttatgtttt tttcatatct       180
     cgtatcgttt cagagatatt tgcaaaaata acggcgattt tgggatgtct gtctgtctgt       240
     ccgtaacgtg ttccctgttt ttaagacgaa ccgttcaacc gatcagcacc aaattttaca       300
     gacataattg taggccgcca gagaccagaa cctccctttt tcaaattttt cggacaaaaa       360
     atacggtagt aataccaaaa aaagccgttt gtaatataat tgtaattgca aacgaaccgt       420
     tcatctgaca cgaaaattga ataacctaat tggtagaggg gaaaattctc tacaacttcg       480
     ctccattatg tttttttcat atcttgcatc gttgcagaga tatttgcaaa aataacggcg       540
     atttgacgat gtctgtctgc tgtaacgtgt tcccactttt taggtcgaac cgttcaaccg       600
     atcggcacca aattttacag acataatttt ggctaccaga gaccagaacc tcgcttttta       660
     aatatttcgg acaagaaata cgttagtaat acaaaaagcc gtttgtaatt ttaattgcaa       720
     ataaaccgtt catctgacgc gaaaattgaa taaacgaatt tgtagaggag aaaattctct       780
     acaactttgt tcccttatgt ttttttcata tctcgtatcg tttgagagat atttgcaaaa       840
     ataacggagt tttgacaccc tccattgaat taacgaaaac cagccgttcg cagatgtcac       900
     gtgacattcc tcgcccagaa ctctctctgg catacgccat cttgcgttgc gtatttgatg       960
     attttcttat tgtaacttac acgttgtcat ttcaaagcaa tggcgcactg aagaattaac      1020
     aaaaacacgt cgttcttcgt acgataaatg ataatctagt gtctacaaat gccatattag      1080
     catcagttaa caacggccat caatagtatg agattaaaga acgcactcct aactgtagcc      1140
     gtagcgtagt gggcaagcgt tggactgtga cgctaaaggt cggtggttcg gaacccgcca      1200
     ctacctaatt tttttttcct aaaagggttt cagacactct tattaattaa ttttttatta      1260
     tttagattat tattttggtc caaaatgttt gcaaaaactt ataaaactac aaatctaaag      1320
     tgggccgtaa aacacgtcag tgcga                                            1345
//
ID   Helitron-N12_LMi repbase;    DNA;    INV; 715 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 19.12, Created)
DT   04-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-715
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3246-3246 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. The sequence has hairpin at both
CC   ends, and short non-symmetrical TIRs.
XX
SQ   Sequence 715 BP; 216 A; 142 C; 132 G; 225 T; 0 other;
     tggcccactt taggttacgg tagtaacact aaaagtgggc ctttgcgatc gtcttttgac        60
     agctcgaaat ttaaatgaaa ataacggctt aaccattcat ctgacacgaa aattgaataa       120
     ccgaatttgt agaggagaaa attctctaca actttgctct cttatgtttt tttcatatct       180
     cgtatcgttt gagagatatt tgcaaaaata acggagattt gacaccctcc attgaattaa       240
     cgaaaaccag ccgttcgcag atgtcacgtg acattcctcg cccagaactc tctctggcat       300
     acgccatctt gcgttgcgta tttgatgatt ttcttattgt aacttacacg ttgtcatttc       360
     aaagcaatgg cgcactgaag aattaacaaa aacacgtcgt tcttcgtacg ataaatgata       420
     atctagtgtc tacaaatgcc atattagcat cagttaacaa cggccatcaa tagtatgaga       480
     ttaaaggacg catctcttaa ttgttagccg tagcgtagtg ggcaacgcgt tggactgtga       540
     cgctgaaggt cggtggttcg gaacccgcca ctacctaatt tttttttcct aaaagggttt       600
     cagacactct tattaattaa ttttttatta tttagattat tattttggtc caaaatgttt       660
     gcaaaaactt ataaaactac aaatctaaag tgggccgtaa aacacgtcag tgcga            715
//
ID   Helitron-N13_LMi repbase;    DNA;    INV; 2562 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.12, Created)
DT   06-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2562
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3247-3247 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. 3'-end is similar to that of
CC   Helitron-2_PM, and 5'-end is similar to that of Helitron-N1_AC.
XX
SQ   Sequence 2562 BP; 825 A; 446 C; 528 G; 760 T; 3 other;
     tctctatata taaaaatgtt gtgttggttt gtgtgtgttt gaaaatctca aaaagttctt        60
     caccgattga gctccaaatt tgccacaacg ttgcactgta acacaggaag gtttttagat       120
     acctatttgt ttaatatatt acacataacc tatatatatg acacttttgc gatttttggc       180
     aacaactttt ccacattgta aaatttatat aaattcgtat gtgatatata tttaaaaata       240
     ggtatgtaaa aacatgcgcg taatccagta gtacgttgta tcaatatttc aaagcattcg       300
     gtcaagaact ttcggagata taagattttg aacataagac taaacatggt tctaagttag       360
     atttctaaga cgagatacag gaagggtagg caatgacgaa gaggggaggg gagatataca       420
     cgtacttttt taattgtaac caagactcca aataccaact tttgtagttc aggcttcaaa       480
     actgacttaa tagcagcatt tttcaaaaat cttttcatcc cctatttcac ccccttaatg       540
     gctgattttc agaaaaagct gaaagacgcc ttttttaaat tctaaccaag aatccgtata       600
     ccaatttatg taggtctagc atcaaaattg actggataac agcgtatttt caaaaaactt       660
     ttcatcccct atttcacccc cttagggacg gaatatcgaa aaatcgcttc ttaaacgtcg       720
     ccaacggtgt aagatgaaca ccctctgcaa atttcaagtt tttatcatca gtggttttgg       780
     ctgggcgatg atgagtcatt catttaatct gtcagtcagt cactcggaac attgcctttt       840
     atttatagat attacgcgtt gcaagctgtt gtgatctctc tcgaaggtgg tctatgcagt       900
     gtcccctgtt atatactgag tattaccaag cggagcgcag cggagtcgct tactaagtcg       960
     gacgactggg aggacgaccc tgctactcaa cgaattgtgc acgatgaaca tatgggcccc      1020
     ctgagtgcca aacaatagcc gttggcaacg aaatgctcag tttacaagat gattgattta      1080
     ttgacagtgg ttcgtacaag aacgtattaa cgacagagca gaaatgcata aatggttatt      1140
     ttatggtcaa aaaacgattc gttcaaaata ttcaatctga taaggatctc cttcgaatta      1200
     ccactgcgtt acagaaaaca acattcccga gtaacgctcg ggaaccagat gctttctaat      1260
     aatgtttgca attgaagtag ccgggcctct aacgatatat atcgaatgtg cgcttctaaa      1320
     tccctgccga caaaaaatgg acgtttacca tcgtagaatt acttggaaat gaaggtttwa      1380
     ttttacttac ggcagctgcg gcattcggtg ctaatgtaat atttcatggt aaacgcggaa      1440
     gattattagc ctcattgtat gtaactgagt tttcaaagag cagtcaagag attttggcaa      1500
     catcagccgc tgccgcaagt gaaattttac cgaacattat acaaatacat caacatgaaa      1560
     aatgacgtat cgattttcga ttataattat acaaggaggc caatgaaact tacacaattc      1620
     aaaaggcgct ttgccataga tgcgtgcaag acgaaaatca tgtgtatacg tagccattaa      1680
     gagaggcaaa aggaagcaga tgttttcata tctatagctc tgatcacgct ttaaattctc      1740
     cagctgccaa ataagtgagc gtcgaaaatt gaggtggtac caacttctgc cttgcgtacc      1800
     ggtcaggtgc tatggtaaaa atgcgacact aaagtaacaa cttttcgtgg aaacgcattt      1860
     tagatacgct catgtttaat ggttaatttt cagtaagatc gatcatgata ttagcagtgg      1920
     aaatcaaaac accatagaaa cgaattctga acaaaacgtt gtttatgkgc gtcgttattt      1980
     cattttattt tatgtaacag taactttgtg atagtttcca gcagataaca cataatttga      2040
     agcaattccc taatttttaa tttcttcatt ttatataggt acgacgagcg aaagacgaga      2100
     cgtgcataga gatagatgga ggaggagatt gaagatggat ggaaggaaag ggagtgatga      2160
     acagaggccg gggattagat agagggagga tgaagaggta gatagtgggg aagcaggaga      2220
     cagacatagc ggatgggaaa tagatggaaa gaatgtagaa aacaatagct ttttactaag      2280
     gtggtccaga gtcggtaaac tgatctgtat gtttgtggag aaaacgaacg acaaaaaagt      2340
     aatctatctt aagggtttaa aataatgagt atctgtgaaa ctaacctttc gttttacata      2400
     ctatactttc gttttacata gccacwgagc ctaaaacgaa cgatattgat atgattgaag      2460
     cattctctcg gtgattctat gttcacatga gttacagtat ttccttttct atttatttca      2520
     tatgagagtg agccacagcg aagcgtggtc gggtttagct ag                         2562
//
ID   Helitron-N14_LMi repbase;    DNA;    INV; 2817 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.12, Created)
DT   09-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2817
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3248-3248 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2817 BP; 937 A; 541 C; 499 G; 840 T; 0 other;
     tcttacatct tataaaatag gctgtatgtg tgtatgtatg tatgttgttt gtatgtatgt        60
     atgttccaca tctcctccta aactactgga ccgatttcaa ccaaacttgg tacacatgtt       120
     ccttaatatc aggcaacaat cgctgtcggg gtaagaatca cctacgacac atacgtaagg       180
     agatatgacg tcataaacaa tgagatgcgc gaaaaactgc tgcgtcaaac gacaatgctg       240
     cacattttct cctaaaccac tggaccgatt tcaaccagat ttggtacaca tatttcgtac       300
     cgtgaggtaa caactgctgt aggagtacga accacgtacg acacatggtt caggagatat       360
     aacgtcatga acaataggaa tcgcaaaaaa ctgctacata atgcgacgag actttataaa       420
     tacactgtat gagaatgaca gtacttggcg acttgcaaca aactttaaac ataatttcaa       480
     acctttatta aactttttct cgcagacaac cacatcaaaa taatgaaagg aaaaaagttt       540
     ctcgcttact acttttccgc tgttcatgga gcaaaactat ggcattcggt ataacgttac       600
     aatttataat ttctacacta ccaattgtac tcgcaggaaa ttttgcagac agaatacaca       660
     cttaaagctg aatgtacgtt cgaaattgta tcacagtacg acacgtagtt catgagatat       720
     gaggacgtaa agagtaacgt tcatggaaaa ccgccccatc aagcatcacg ttttaatcta       780
     ttacttcttt actactaacc atattcgcaa cagattttac cgacatacag cacttataca       840
     aatcaatata ttcctgcaaa attttacaat tgtacaacat atctatacta ataataaatc       900
     tgtaaatgta ggcctgtcgc tgttcgcttc aatcttcaaa actactggac gaattttcat       960
     gcggttttca caggaaacat gagcgaagat tggttcagga tctaggcatg atttcatcaa      1020
     aatagaatca cgaagtgttt tcatagaccg tcgtgtctgt ctgttcatct attagaaacc      1080
     acttctccaa aactacttca cgaattcgca tggggttttc acaggtaact tcagcgtacc      1140
     ttgggacaac atatagactt agtttcataa aaatcggatc acggaaagaa gaacatcaca      1200
     atttaacgtt tttcatcgac aaccgtcatg tctatctttc tctttcatct ccaaaactaa      1260
     tagacgaatt ttcaggggtt tttcacagga aacgtgaggg tatcttgcgg ttacagaaac      1320
     gcttcatttc acaaaatcgg atcagaaaaa gtaagatatc acaatttaaa catttctctg      1380
     aaagcaatcg catgtgtcta tttgtagaga gtaatctcca aaagtactaa atgaacattc      1440
     atgggggtat cacagataaa tagagaatat cctggggcaa catataggct tcatttcatc      1500
     aaaatcagat caggaaagta aaagatatcg taatttgaag ttttaggtgt atttcatgct      1560
     tggaaagaac ggcgtaatgc agcaaagaac taatagatag cgctgcgggt gttcgtgtga      1620
     agttcggggc agcgatcgga ttattaccct ttgaaaatac tacttactct ttgacttttc      1680
     aaatttacca tatttctgaa aatcgttttc ttggttgcta tgttctacga aatatgattc      1740
     aacgcaatga atataaaact gatacaatcc tcgccgtgtt taatccatat atttacatac      1800
     tgatatcaca gtctaacgta tatgtacaac tgctatggaa gtttaagtct cacgcttgga      1860
     gcgacaatag cgcatctaac ggaaagagag ccaaccgtaa gaataataat tgttttcagt      1920
     gatatttcta cttcattaag gaaatactta ttacttatta tatttcagct ttccatgcct      1980
     cagcccattg tccagagata tgaatgatca tgaaataaat gttttaaatg gcgaatataa      2040
     ctgatgtatg atgtaagcta catcatattc atgaagatat gcctatttct aacacgtttc      2100
     gcaaacgtat taaaaaaaaa ctactgacac attttcatgc ggttttcaca ggaaatttga      2160
     gctaagattg gggcaacata taggcatgat ttcatcaaaa tcagatcacg gaaaaaagat      2220
     acatcgcaat cttaagtgtt ttcagtaact gtctgttcat ctattagaaa tacctaatct      2280
     cctaaactac ttcacggatt tgcatggagc aacttcgttt cataaaagtg gaatcaggga      2340
     aattgtttta gatgtaggtt atgcttgaag tatggattgc gtagtacagc aaacaagcga      2400
     tagaggcgct gtagtgcacc aaagaactaa taaacaccgc tgctgcataa taagtatggg      2460
     gtagtacaac aaggaagcga acgtctgtga cagaattaag caatcttatg tctacgaata      2520
     ccaacaaaca ttgaacatag tgttactgat ttcgctttgt gtattaaata cttaacgaca      2580
     tttctttgct tattttggca cgtttcactt tttgtatcaa aaactttatg aagatacatc      2640
     gtttcggaca atgactttta cttacatttg acatcttggc taggacaact gagtttattg      2700
     acagagcgat ccaacaagga ttctattttt actgactgag gtccggaacc ctaaaaagcc      2760
     atgatacaca caggccctcc ttcaacaacc gttgcgaagc acgggcatat aagctag         2817
//
ID   Helitron-N15_LMi repbase;    DNA;    INV; 1808 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.12, Created)
DT   10-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1808
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3249-3249 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1808 BP; 588 A; 328 C; 420 G; 472 T; 0 other;
     tctatataaa taaaaatgaa tcgccaaatg tgttgctaag cgtaaaactc gagaatggct        60
     tcaccgattt ggctgatctt ttctttgttc tgttcgtaat tctcaggaca aggtttgtat       120
     gaaagaaaat ttttggaaaa tatcagaatt tgagaaaaac tgaaagtacg cttccggctc       180
     ggatcatttt ctagattctc caacaatcag cttattcatt cgctactcgc ctagcgacca       240
     aatacgctgt aacggagcga acaaatacgc caaggaggtt cgaataaagg gagatggcgt       300
     tatgcactca agcttaaaac agccagacag atttaacatg aaacgttgtt tctttagaag       360
     cccctcagta ttattcttac ctccatggtg ttgtcggtgg taatcatatc tttggagcgt       420
     tgcaaagata gaattgatgc cagttcgtgg tatttttgag tgttacaaac aaattgagca       480
     cagatcgtgg tttatttttt ttacaacaat gcctccattg cggcgtcgta atatcggtcg       540
     gcgtacgcgc aacgcaatcc tactacgtga tcgtagagtc tatgagaccg acgaagatcg       600
     tacacgcgct tggaggtaaa tcgagaaaga aattctgaag cgcgatccgt tatgactctg       660
     gaacaacggg tacagtcgag ttcgactcgc tcagttgcag tttacgcaca aaataatttg       720
     gatcgtcgac aaaacagacg gcaacatgtg acgattagaa ctgaacgttt ggcgttcaca       780
     tacgatccag tagtcgatta cgcaccggat gcatcagttg gcttcggaac aatgaacaat       840
     gtttgtcaat aacccgtttc caattgattt acccatccat tttgacttct attcccaatc       900
     aaggtcccga ttgcaataac aataaataag atcagagaga gggggaggag aagataagaa       960
     tgggagaatg aaatggattt aaaagggggg atgatataga cgcagagagg aggggggagg      1020
     agatggatat ggtgtggggt aagagggagt ggtgtgaagg tgatggaaaa agataggggg      1080
     aggaggagat ggcgaaatag aggagggagg aagggaagaa gagaagagat tacggtatat      1140
     atcccatacc cattatgtta cgaaatatca accaaccgcg actttgtaac ggcacacggc      1200
     tagcagtgaa aaaattactg aacaatgtga tcgaagcaac cattctaaag ggaaaatata      1260
     agggagaaga tgtgttgata ccccgcatcc caatggtacc aactgacgta ccgtttgaat      1320
     ttaaacgact acaatttcca gtgcggcttg ctttcgctat gaccataaat aaatcacagg      1380
     gtcagtcgtt gagtgtttgc ggcgtcaatc tggaaaaccc atgcttctct catggacagt      1440
     tgtatgttgc ctgctctcgc gtcggaaaac cgacagcttt atttatttac gcgccaggca      1500
     atcaaacaaa aaatatcgtg taccataagg cattacaatg aaaataccac attactacta      1560
     ctactactac taaagtcttg caatgtacaa aatagaaaac ttatatttgt aagtaattgt      1620
     tgtttattat ggagacacaa atctataaat aaagtgatca ctctgaaata tgttttatta      1680
     ctgcgaaggg ccaataactt ttgacataac aaagtctgtc ggggaagacc tattaacata      1740
     aaaaaatcaa tgtagtgttg ttttagagaa aaaaaatagg gcagaacaac gtctgccggg      1800
     gcagctag                                                               1808
//
ID   Helitron-N16_LMi repbase;    DNA;    INV; 919 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.12, Created)
DT   11-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-919
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3202-3202 (2014).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 919 BP; 292 A; 166 C; 146 G; 315 T; 0 other;
     tcatatatat tatttctcat cggtgttttt ttttgtgggt acgccatatc tcccgtatta        60
     cttatccaaa attaatgatt gaggtatcat tttcaaggtt tcgttctcca ctaatgacga       120
     aaaatacaca gatagtttaa agttattgtt ttcacaaaaa aactttattt tgaaaaaaat       180
     tgtactgttc gtacaatcta agttgatacc cggcgaacga tcgtaaatgg gacatgtatt       240
     tacggttgct cccatcagcc accgcgccga gtatcaactt agtttgcgcg gccgatataa       300
     aagcaatgta gaaggtgcca tctattgaca atctgtttaa ctaacatgaa cgacagctct       360
     tgcagttgtt tagattcttt atgcaagcca aagaccttct ttgatgcaag catagtttat       420
     cacacgattt cggttataca cgtcgatgta acgacgaaaa atacacaaat aatttaacta       480
     acaggcacga cagctcttgc agttgtttag attctttacg caagcgtagt ttatcacgag       540
     atttctgttt cacacgtcga tgcacaacag ctgttggaat tgttcacttt gttcaagcaa       600
     gcgttgtgta ctgctgctaa agcacataca gcaaaaagaa tactaacatt gttttcaaag       660
     aatgttttgt aaaataaaca agttttcaaa aaataaaata aacatgaaaa agtcaatatc       720
     tgatttttta tgtttcacaa ttaatcatat tgtatttaat tatataaatt ttcttacaat       780
     gagactaata tttgttacta ctattcaaag tttattatct tttatacata tgtacttgca       840
     tctgcctctt ctccattact atcttaccta tctgtgactg atcaggatag agtgcgaatt       900
     attcgcacgg gtcaactag                                                    919
//
ID   Helitron-N17B_LMi repbase;    DNA;    INV; 2926 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.12, Created)
DT   12-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N17B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2926
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3203-3203 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 2926 BP; 942 A; 517 C; 638 G; 829 T; 0 other;
     tcataccgcg cacggcagtg cgcggtatta atatgttcgt aaacggcgcg tgcgaatttg        60
     cgattcttta ggggcccata tctcaggttc tattcatctc agagtgaagg ggtaaagtgt       120
     tctggataga tcttggccta gtgatcattt gtgtacatat tagaagaatg ggtatactat       180
     agctatcata cagtacatcg tcaaaatttt caaagttaca cacttcctgg agcccatcca       240
     aattgagcaa atcagttggc ttttgtacat gacgtgtagt ctatggtggg ctttaaacgg       300
     cttacaaaag caccattcat tcatgggcgg ttcctgagaa aatctaaaaa aaaaaaaaaa       360
     aaacgaattg tggggatggt cacttcgata ctttctattc attgcaaatc ttcgaaattt       420
     ttaccatatg ttcttatgat gatattctcg aggccgtttt taaatttttt cgatatcgtt       480
     atccgttacc gagatccaga ggttgaaact tatcatagtt ttgcacaaaa tcacaaaacc       540
     cgatttttag ccgttttagc accgtgaatc gcaaatatct aaataactaa ccatagaaaa       600
     ttgttcaaat atttacaata catcctgtag acatttatct ataaacggca tttttcagtt       660
     ttcgtaaatc ttagtccgtt agcaagatac ggccgaaaaa ccgcgatatt ttgctagaaa       720
     aagtgcgtat tgtgctgaaa gacggcgttc ggacagctct gaaacttacc atgcgatttg       780
     aaaaaaggta ctcggcgaaa aaaattgatt tttgtacatc ttaaagattg aaatcttcgg       840
     tcgatgaagg ggtgattttt gttttcgttt actttacagt taatatgcag catccggttt       900
     agtgaactat tgcaacatat tttaaagagt ttgcagaggt aaaaacacat tgcgtagact       960
     tctcgtatgg ttgattttag gttacacata gctgcgtatg aaatgtagat aacatatcga      1020
     aattttattt aaagtttaga gcagaatgat atcttatgtg gttcttgaga tatcggtccg      1080
     tgaatgatag cacgcgacag taataggttc gaaaacgcta tttctgattg tgaggtaacg      1140
     tatcttgagg aataggaaat gactaaaatg ttatgtgtat gttgtttagg tgtttatctg      1200
     gaaaatccgt ttcccgtttt tggaaatgtg tattcgttat cgcgatacgc tacaaaaatc      1260
     ataatttttg gtatcaaaag atccaactgc gtgcattggc aaatctacac ttctattcat      1320
     ggcaaatcgt cgaaattttt acgatgcgtt ctaatattat gattccggaa agctttgaaa      1380
     gtttttccga taatactatc cattaccgag atctgtagat tccaagttac cgcacatatt      1440
     catgacaaat atgcatgtaa tatccggtct gacgtgtaat tatggtttta actaactagc      1500
     gaacgtacag caagggttct tggtttggag gtcacgaacc tgtgtttcta gtcgccgttt      1560
     attcaccgat aacatttata aaagttacaa atcatcgtaa atctttcagg ccactggacg      1620
     tgcaaaattc gtcatcgtaa tggttggatc aacgtgaacg acttgaatta tcgtgaaata      1680
     gcaacatcat ataaaactaa attctcagct ggactcgaaa atatttacat gctttttatg      1740
     gaacgatatt gatagtgttt aacaatgttc tttgaaatag ttaagcgtgt ttagcaatca      1800
     tctgaatgtg aagctctttt tagaaagtaa actactacat agtcaatttg gtctgacgtt      1860
     tgtacaaatg tatcaaggta tataaaatac tatccaaatt ttactcacca ttgatttcat      1920
     gttatataag cagtacactc tgatgtaaca ggaaaaagac gggaaccagc tgaaaaatgc      1980
     tcctgccgga gcacagaaaa ggcgaatatg ttctctgaca caaaagtgtg gaaccagctg      2040
     cctcaatcct cattccgact tcctcaccaa aaattttggc atgcgaacat attcgcgctt      2100
     ttttcggctg aatgtgagta ggacagagac agtgcaacag gcagagagag ccatatatga      2160
     tggaacagag aaagtgtcag ttcaggagaa aggcatatgc atgaaaacag cagtgggaag      2220
     cgaaacgaga tgtcggaagt caggaacagt ggcaacaaca aactaagaca gatgcagata      2280
     gtagcaattg gagcaaaaga gaaaacagtg ggaaactgag acgaatggag accatacata      2340
     aagcatgagc gtgcggctct ccaatactat agcacgaaac aatttgtcca atttttccca      2400
     tccccagtac ccgcgtgcta aagttttccg gtctacaggt caaaccccaa gcaaaccatc      2460
     ccatggacat atgtgtaaag gagacaatcg tgattgaaga caatgaaagc cgactctaag      2520
     tgagaaagaa aggatactgg caacaggaca ggaagtgaat gggacaacgt cagtggggca      2580
     gagagacgat gaaagtggca gaaacagaca gcggtgagga atcgcgaggg aaagggatga      2640
     agacattgaa agtttgacac agacagaaag cggcagtggg agagacagca aacaaacgga      2700
     cagagacata tatagacact gacagtgaga cgacattgct gactatgacg gcttaactgg      2760
     gcaaaagtat ttacaaagtt atgcgctaaa agtgcgcgaa tatgttcgca tgccaaaatt      2820
     tttggtgagg aagtcggaat gaggattgag gcagctggtt ccacactttt gtgtcagaga      2880
     acatattcgc cttttctgtg ctccggcagg agcatttttc agctgg                     2926
//
ID   Helitron-N17_LMi repbase;    DNA;    INV; 2417 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.12, Created)
DT   12-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2417
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3204-3204 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 2417 BP; 777 A; 432 C; 545 G; 663 T; 0 other;
     tcataccgcg cacggcagtg cgcggtatta atatgttcgt aaacggcgcg tgcgaatttg        60
     cgattcttta ggggcccata tctcaggttc tattcatctc agagtgaagg ggtaaagtgt       120
     tctggataga tcttggccta gtgatcattt gtgtacatat tagaagaatg ggtatactat       180
     agctatcata cagtacatcg tcaaaatttt caaagttaca cacttcctgg agcccatcca       240
     aattgagcaa atcagttggc ttttgtacat gacgtgtagt ctatggtggg ctttaaacgg       300
     cttacaaaag caccattcat tcatgggcgg ttcctgagaa aatctaaaaa aaaaacatga       360
     tttttgggta ccaaaaaaac gaattgtggg gatggtcact tcgatacttt ctattcattg       420
     caaatcttcg aaatttttac catatgttct tatgatgata ttctcgaggc cgtttttaaa       480
     ttttttcgat atcgttatcc gttaccgaga tccagaggtt gaaacttatc atagttttgc       540
     acaaaatcac aaaacccgat ttttagccgt tttagcaccg tgaatcgcaa atatctaaat       600
     aactaaccat agaaaattgt tcaaatattt acaatacatc ctgtagacat ttatctataa       660
     acggcatttt tcagttttcg taaatcttag tccgttagca agatacggcc gaaaaaccgc       720
     gatattttgc tagaaaaagt gcgtattgtg ctgaaagacg gcgttcggac agctctgaaa       780
     cttaccatgc gatttgaaaa aaggtactcg gcgaaaaaat ttgatttttg tacatcttaa       840
     agattgaaat cttcggtcga tgaaggggtg atttttgttt tcgtttactt tacagttaat       900
     atgcagcatc cggtttagtg aactattgca acatatttta aagagtttgc agaggtaaaa       960
     acacattgcg tagacttctc gtatggttga ttttaggtta cacatagctg cgtatgaaat      1020
     gtagataaca tatcgaaatt ttatttaaag tttagagcag aatgatatct tatgtggttc      1080
     ttgagatatc ggtccgtgaa tgatagcacg cgacagtaat aggttcgaaa acgctatttc      1140
     tgattgtgag gtaacgtatc ttgaggaata ggaaatgact aaaatgttat gtgtatgttg      1200
     tttaggtgtt tatctggaaa atccgtttcc cgtttttgga aatgtgtatt cgttatcgcg      1260
     atacgctaca aaaatcataa tttttggtat caaaagatcc aactgcgtgc attggcaaat      1320
     ctacacttct attcatggca aatcgtcgaa atttttacga tgcgttctaa tataaaatac      1380
     tatccaaatt ttactcacca ttgatttcat gttatataag cagtacactc tgatgtaaca      1440
     ggaaaaagac gggaaccagc tgaaaaatgc tcctgccgga gcacagaaaa ggcgaatatg      1500
     ttctctgaca caaaagtgtg gaaccagctg cctcaatcct cattccgact tcctcaccaa      1560
     aaattttggc atgcgaacat attcgcgctt ttttcggctg aatgtgagta ggacagagac      1620
     agtgcaacag gcagagagag ccatatatga tggaacagag aaagtgtcag ttcaggagaa      1680
     aggcatatgc atgaaaacag cagtgggaag cgaaacgaga tgtcggaagt caggaacagt      1740
     ggcaacaaca aactaagaca gatgcagata gtagcaattg gagcaaaaga gaaaacagtg      1800
     ggaaactgag acgaatggag accatacata aagcatgagc gtgcggctct ccaatactat      1860
     agcacgaaac aatttgtcca atttttccca tccccagtac ccgcgtgcta aagttttccg      1920
     gtctacaggt caaaccccaa gcaaaccatc cccatggaca tatgtgtaaa ggagacaatc      1980
     gtgattgaag acaatgaaag ccgactctaa gtgagaaaga aaggatactg gcaacaggac      2040
     aggaagtgaa tgggacaacg tcagtggggc agagagacga tgaaagtggc agaaacagac      2100
     agcggtgagg aatcgcgagg gaaagggatg aagacattga aagtttgaca cagacagaaa      2160
     gcggcagtgg gagagacagc aaacaaacgg acagagacat atatagacac tgacagtgag      2220
     acgacattgc tgactatgac ggcttaactg ggcaaaagta tttacaaagt tatgcgctaa      2280
     aagtgcgcga atatgttcgc atgccaaaat ttttggtgag gaagtcggaa tgaggattga      2340
     ggcagctggt tccacacttt tgtgtcagag aacatattcg ccttttctgt gctccggcag      2400
     gagcattttt cagctgg                                                     2417
//
ID   Helitron-N18_LMi repbase;    DNA;    INV; 1388 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 19.12, Created)
DT   16-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1388
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3205-3205 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1388 BP; 429 A; 284 C; 270 G; 405 T; 0 other;
     tctatatcta tatataaaag gcttgtgtgt gtacgtgctg acagactttt ctccatgacc        60
     acatactgcc acccactcgt ggttgtggtg gtagatagcc cttggtctaa tgatgttagt       120
     aagggagttt ggtcgcggtg cgtggcagtg ggtgagtgtg acgagcaaaa attcgcaaaa       180
     tatgcaataa atactcttag gaaaagctat atactctgtg acttacgaac tttacggtac       240
     gagtcaaaat ctgtttattc tttcaatcgt cagacaatgc ggtcctttca gactttaata       300
     acgacgagga atatcaaata cgcaattttt taaatagatc acatgtttcc gtcaaccaca       360
     cattaccgac tatgaacaga gacacaaaac aaagataaaa atccagatag actcaaagat       420
     aaaaatactc gtggaacatt gatcactgtc gtggaagcgt ggtggaaaca cagacataca       480
     ttaatgaatg tctcttaggc catagatatt gatatgcctg tgccagtaag ctcactggtc       540
     tgtgctaatc agtgatctct gatacatata gccgcgacac tctctgctgt gaaaggtgtt       600
     atcgtttgac agctgggtca agaaaaacta tgcgacgtag tcctactcat atcccggcgg       660
     cctcctgtga taatgttggc aacagatgtt gaataacgag aatcatgtga catcgtcata       720
     agccaatcgc gtgacacgca aatattttgt cgtgaaatca agcatacagc aggaacagca       780
     gtatttatct acactctatg tggttcggtc atctttgcaa cgattttata tcgtgttatt       840
     gatgttgcca acataaaaac acgaggccgc caggatagaa agtaaaattt taccgaatca       900
     gatacatccg ttgttgtcac atctcattat gaccagcact ttcacgcgaa actcttttgt       960
     atagagtctc atgattcaca cagtcttaca attcattcca aattcctatt caagaagata      1020
     tttgtgaaaa ctgttacaaa tcaatattcg cacttatcca atatcgtttt cagaaatgta      1080
     atttgccagc cgctttcggc gctgctgttg caatgtgtaa ctttatgaac acaacctaac      1140
     attgaattta cattgttccg aagcacggac ttaatttcac tcttagtatg aaaaacttta      1200
     tgaacattca tcgttttcga caatgacttc tacttaaatt tgacatcttg gctaggagaa      1260
     ctgagtttat tgacagagag atccaacaag gattgtgttt ttgctgacct acgtccggaa      1320
     cccaaagaac catgatatac acaggacctt ctttaacaac cgttgcgaag cacgggcata      1380
     taagctag                                                               1388
//
ID   Helitron-N19B_LMi repbase;    DNA;    INV; 1377 BP.
XX
AC   .
XX
DT   23-JUL-2014 (Rel. 19.12, Created)
DT   23-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N19B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1377
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3206-3206 (2014).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus.
XX
SQ   Sequence 1377 BP; 416 A; 224 C; 344 G; 393 T; 0 other;
     ttttgcacag tgtgtgtgat ttggtccaac ttaaaagata ggatagtttt tatctcgatt        60
     aataacctca atattatttt tattgcaaat taaatgtttt tatctaggtt gggtaagtat       120
     ccaataattg gcgctgttct tcaacttgaa gtctgggcta gcggcaaagt tctcggttgg       180
     agagcgaaag gtcacgggtt cggatttttt cactttgagt tttaacctag ccttcacctc       240
     tcaacgatgt gaggagtcgc cagaaacgac acgtggttcg gattccacgt taaactgtag       300
     gtcccctttt cccggttgga taactggggt aggttaggga catgttaggc gccgaagtgg       360
     cgtccaatcg aaagacttgc accaggtcac tgagccacac gaaattatta ttatattcga       420
     tttaggacgt ttccttgatg ctacaattta tttcacatta cacatttttt ccaaatttac       480
     ataaggcata accgtgcttt ttaaaatttt tcgtgtattt cattttattc taattttgct       540
     gtgtattatc tactatatat aaaaatcaat tctttagtct cgctaaaact cagaaatggc       600
     ttcaccgatt tgaataattt tttttttttt cgctttaata caggggtggt ttagaaaaaa       660
     tagggaaaac ccaaaggaac agctgaaaaa tcgaaaaaat cgaaattggt aattttgtaa       720
     ggggggcatc gccacttcgg attagattcg tattttatgc gctgccatac cgttcatccg       780
     actgcgataa aattttgcac acttgagctt caaaacaaga ggaacggcac tgtctacata       840
     ataattcgca cggtgcatgg cggagggtac tttacaacag acttcgacac caatctacag       900
     ttttattcct atcttgatga aattttgcac acttgacctt caaaacaaga gaaacatcac       960
     tgtctacata agatttcgta cgatgcatgg cggagggtac cttactccag actttgacac      1020
     cgtttgaccg atcaccatga atttggcagg tattgtaatt ttcatataca gggagggagg      1080
     ggatgaacaa gaggggagag attggcagag agcggggagg taatgacagg ggatggatag      1140
     gtggatagag ggggggagga ggaggaggag agggaggaga gaggggagga ggagatggac      1200
     agagagagga gggaggagta catggactaa ctgaatattg gaataaataa atacccgagc      1260
     aacgccgggt tttcaggtag ctaatacagt gagaagccta agaaaagagg taagaaaatg      1320
     gagatggggg aagtgatgga gagagattaa ggaaaggagt gtaggatgta atccaat         1377
//
ID   Helitron-N19_LMi repbase;    DNA;    INV; 2000 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 19.12, Created)
DT   24-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2000
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3207-3207 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 2000 BP; 636 A; 323 C; 476 G; 565 T; 0 other;
     tctaatatat aaaaatgaat gtttgtgtgt tcgtatttta tgcgcggccg taccgttcaa        60
     ccgattgtga tgaaactttg tcaacatatt gcttgcactt tcgcgatggt cataggcacc       120
     attaaatgac tgtacgacaa atagttcagg agatatgacg taataaacaa tgaaatgcgc       180
     ggaaaagtgc tgcatcatgc gacgtctgct tctaaaccac tgtaccgatt tcaaccaaat       240
     ttggtacaca tattccttcc atgaggtaac aattgacgta ggggtaagaa ctgcttacga       300
     catatagttc aggagatatg acgtcataaa caattatatg gttgaaaacc tgtggcatca       360
     tgcgacatgc gaataaggac actttattca tcctaaaatc ttcatgacat tttggacact       420
     tgaccttcaa aacaagagga aggtcactgt cacataaaat tttggatggt gcatgacgga       480
     ggatacttta catatggact tcgtcagatt ctacagttgt attccgatcc tgatgaaatt       540
     tttaaatatg attgaacaat tcagtttatc agtgcagtat taatatattc agattaccta       600
     caatcatttc aattaattaa cgtgactaaa cagttaattt tcagatttcg gcgaagtttc       660
     gaatgaaata aaatttctga aaattctagc agctctctct ggaagttacg ttacattttt       720
     cagggtgata atcatcaaag aaacatttaa aacataaata ttgttcacac catgtgaatt       780
     ttatgtaagc aatttaaagt aagaattttt tttaaaaagc ttcagtggaa agcatacttc       840
     attcagattt ttaaatgacg gttttttggc tgtcagcttt gatgcatacc aagcgtaccg       900
     aatcattggg gtgaaaacca ccagcagaag gaatttgttg ttaccaacgt atggttttaa       960
     tgcgaatttg aaaataaatc taatatataa aaattaatgt ttgttgtttg tctttttgtt      1020
     cgtattttat gcacggccat accgtacatc cgattgcgat aaaactttgt caactcattg      1080
     cttgcactcg cgcgaaggtt ataggcatac taaaattaac ttcgtatggt gcatggcgga      1140
     gggtgcttta caattagtta attcgtttct tacgccttca cgctgaaatg gctggacgga      1200
     tatgaatgaa atttggaaca gaggtagctt ataccctgat taatacatgg gctacctttc      1260
     gtaagccacc gtatggtgcg tggcggaggg taccttacaa tgggttaata tgtttgctac      1320
     tccttcatgc tgaaagatgg acagatttga atgaaatttg gaatgagata gcttataccc      1380
     tgaattaacg catgagctac ctttaggaag ccaccgtacg gtgcatggcg gagggtacct      1440
     tacagtgggt taacacgttt gttactcttc acgctgaaac ggctggaatg aaatgtggaa      1500
     tgaagatagc ttataccccg aattaataca tgggccatgg cggagggtac gttacaacaa      1560
     acatccaaat tgtttgactg gtcaccatga aagtcagcac ataaatgtat gttttcatga      1620
     aggagatttt tataatctgc aagccagtga atttagcatg gcggagggta ccttgcgact      1680
     ttgacaccgt ttgaccagtc accatgaaac ttggcgcata tatgtatgtt ttcatatata      1740
     ggagggagag gagtaggtgg aggaggagac ggacagaaag ggagggagga gacggacaga      1800
     gagaggggag aggaggagaa tgagagaggg gagatggtga caggtgaaag gagatgaaca      1860
     gagggagggg aggaggaaat ggacagagaa agacgggagg agacggaaga gagaggaaaa      1920
     gagaaggtga cagagagagg aaaagaagat ggactaactg gaataaataa gtaccgggcg      1980
     acgccgggtt ttcagctagt                                                  2000
//
ID   Helitron-N1B_BM repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   05-NOV-2012 (Rel. 20.10, Created)
DT   05-NOV-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_BM; Helitron-N1B_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-266
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3209-3209 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 266 BP; 86 A; 50 C; 48 G; 82 T; 0 other;
     tctatactaa tattataaag aggaaagatt tgtttgtttg tttgtattga ataggctccg        60
     aaactactga accgatttaa aaaattcttt cactgttgga aagctacgct atccccgggt       120
     gacataggct atatttatta tattttcaaa aaaattaggg atccttactg aaactccaat       180
     aatgtaaccc aatgtgtaaa aaaattacct aaaattcttt acatcgcgtg cgctacttcc       240
     caagcgaagc cggggcgggc cgctag                                            266
//
ID   Helitron-N1B_DEl repbase;    DNA;    INV; 934 BP.
XX
AC   .
XX
DT   22-JUN-2021 (Rel. 26.06, Created)
DT   22-JUN-2021 (Rel. 26.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1B_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-934
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(6), 2813-2813 (2021).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 934 BP; 306 A; 153 C; 145 G; 330 T; 0 other;
     tatacccttg cagagggtat tataatttca gtcagaagtt tgcaacgcag tgaaggagac        60
     atctccgacc ctataaagta tatatattct tgatcagcat cactaggcga gtcgatctag       120
     ccatgtccgt ctgtccgtct gtccgtctgt ccgtctgtcc gtccgtttat atgcaaacta       180
     gtctctcagt tttaaagcta tctgcatgaa actttcccaa aagttgtctt tctattgcag       240
     gtagtatata agtcggaacg agccggatcg gacgactata gcatatagct cccataggaa       300
     caatcggaaa aataaatgaa aaaaaattat aactttgctg ttttttaatt ttttgtttag       360
     ttcttcgaca tttagcaatg gttaaatatt tccgatttac ggtttaaatt tcatcaaaat       420
     cggacgacta tagcatatag ctcccatagg aacaatcgga aaaataaatg aaaaaaatta       480
     taactttgct gttttttaat tttttgttta gttcttcgac atttagtaat ggttacatat       540
     ttccgattta cggtttaaat ttcatcaaag tcggacgact atatcatata gctcccatag       600
     gaacaatcgg aaaaataaat gaaaaaaaat tataactttt ctgtttttta attttttgtt       660
     tagttcttcg acatatagca atggttaaat atttcagaat tatggtttaa attttatcaa       720
     aatcggacgt ctatatcata tagctcccat tagaaataat aaaaatatat aaaataacta       780
     tcaaataatt gagctgcaaa tcatcatagc ttcaatgttt ttaaacatat acgaaagtaa       840
     atcataattt taatgttttc aaaaatgttt aattcttgca atagctgcaa gggtatatga       900
     acttcggctt gccgaagttt gctttctttc ttgt                                   934
//
ID   Helitron-N1B_LMi repbase;    DNA;    INV; 1576 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1576
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3228-3228 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1576 BP; 491 A; 261 C; 372 G; 452 T; 0 other;
     aagaaagtcg tgttagttac actatttata actaaagaac gtctgaaccg atttggctca        60
     aaattggtgg ggaggtagct tagaagcagg agacggacat aggaaggttt ttagatacct       120
     atttatttaa tattttatgt atgacacatc tatctatatt aataaaaatg aattgccgca       180
     tgtatgaaag cgcatcactt gagaatggct tcaccaattt ggctgatctt ttctttgttc       240
     tgttcgtaat tctcaggaca aggtttgtat gaaagaaaat tttggaaaat ctaccggata       300
     atattagaat ttgagaataa ctgaatgtac gcttccagct cggatcattt tctagattct       360
     ccaacaatca gcttattcat tcgctactcg cctagcgacc aaatacgctg taacggagca       420
     aacaaataca ccaaggaggt tagaagaaag ggagggcatt gcttgaagcc agggattaac       480
     tggtatgtag ggtttaattt taaatccgct acacagacct agcgggcaat gttggcaaca       540
     gccgttgatt ccgggaaatt gcgttacgtc gctgttagcc aatcgggtga tagtatacaa       600
     tatccaatga gatttgccga tttcttacca gtactacgtt tttcgttcat ggaaacacta       660
     ttgattgttc tcgtggttat aagtgattag catttgtaag actgtttcca taagggaagt       720
     ccatttcact cttatacatg aaaaacatca tcttcctcag taagtttaat gtgtctgaaa       780
     ctaaattatt atgcggattc tcaaaataat atcgtttagt atgaagagaa aacaactgtc       840
     gccaactaaa atttcattgg ctgtctcaag ctttgccacg attggtcggc ttcattccca       900
     cgatccaaca gctgttgcct gtgtcgcgga atgtaaaatt ttaccggtat gtagcaatgt       960
     tgttaattgt gtttcaatta gattcctaat aagagttcat tattcactta caggtaaagt      1020
     aactaacaag aaggtcaact gtatgaattt ttatgcctac cgtttgatga ttcaccgaaa      1080
     cgaggacaat cacatactga aatgccgcag attgtttcat cagttcgccg ttgatatgta      1140
     tgttcgtgca ataaaaccat taagagtacg gacattaaag ctactaacct cacagataga      1200
     gcagctcgaa agttctctct aataacccgt ttccaattgt tttacccatc ctttttcact      1260
     tctattccca atccgggtcc cgattgcaat aataataaat aagatcagag agagggagag      1320
     gaggagatag agaatggggg aatgaaatgg atttaaaaag ggggatgata ggagggggga      1380
     ggagatggat atggtgtggg gtaagaggga gtggtgtgaa gatacgggga ggaggagatg      1440
     gacaaaggaa ggtgggagga ggcgatggag aagtagagga gggaggaagg gatagacatc      1500
     gggagaagaa gagaagagat tagggtatat atcccataca cattagcgac tgcgaagcgt      1560
     tgccgggttt gctagt                                                      1576
//
ID   Helitron-N1B_PPo repbase;    DNA;    INV; 727 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_PPo; Helitron-N1B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-727
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2736-2736 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Termini are CA/TC..CTAG/TA. This is
CC   a longer version of Helitron-N1_PPo.
XX
SQ   Sequence 727 BP; 250 A; 108 C; 122 G; 247 T; 0 other;
     tctatactaa tattataaag aggaaaactt tgtatttttg tatttttgta tgtattgaaa        60
     taactcaaaa accactggac cgattttaaa aattctttca ccatcagaaa ggtaatttat       120
     ctgtgagtaa cataggctat attttattat tactaatgtt taggaactat taataaacag       180
     cgtgtttctg gacgccggcg ttaaaaattc actaaacttt aacttttctc ggcttacgct       240
     gcctaaaccg ttagaggtat ataaaaatga tgtatgaaag aattgtagat ctcaaaaagt       300
     tctacagaaa agtccgcgat agcatatatc tatctttaac ggttttctta caataaccac       360
     ttttttgttt acaaaatgaa ttaaaaacct cacgctattt gcagcgttct tttattggtt       420
     tcaatattaa tccttatcca aataaatgcg tttgttatca ggagaattta atgtagaata       480
     aaattgtcct ttacagtatt taaattggac taatagttta gaagatatcg cgaacacaaa       540
     caataagggt aaccgaaaaa tcagcttaca agctaccggg cttagaaatt tggaatcttg       600
     catcggtaga tttctgttat tacgtagatt actactaagt taatactttt ggtaataggt       660
     tgaaaaaagg ggaacgtaat aggttatatt tgtatttcac gcgggcgaag tcgcgagcaa       720
     cagctag                                                                 727
//
ID   Helitron-N1C_BM repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   05-NOV-2012 (Rel. 20.10, Created)
DT   05-NOV-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_BM; Helitron-N1C_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-211
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3210-3210 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 211 BP; 52 A; 30 C; 42 G; 87 T; 0 other;
     tctatactaa tattataaag aggaaagatt tgtttgtttg tttcgaatag gctccgaaac        60
     tactggaccg atttgaaaaa ttctttttcc attagaagcc gacattgtcc ctgatgaaca       120
     taggctactt ttttttattt ttttttattt tatttttttg gtttcatgtg tgttttaatg       180
     tttccgaagc gaagcgaggg cgggtcgcta g                                      211
//
ID   Helitron-N1C_LMi repbase;    DNA;    INV; 1702 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.12, Created)
DT   11-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1702
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3199-3199 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1702 BP; 519 A; 318 C; 385 G; 480 T; 0 other;
     tctatatata taaaagaaag tcgtgttagt tacactattt ataactaaag aacgtctgaa        60
     ccgatttggc tcaaaattgg tggggaggta gcttagaagc aggagacgga cataggatac       120
     tttttgtccc gttcgaccgc gttcccgtgt tacgtgacat tatatcagaa tttgagaaaa       180
     actgaaagta cgcttgcagc tgggatcatt ttctcgattc tccaacaatc agattattca       240
     ttcgctactc gcctagcgac caaatacgct gtaacagagc gaacaaatac gccaaggagg       300
     ttagaataaa gggagatggc gttatgcaca caaggttaaa actgtcagac agatttaaca       360
     tgaaacgttg tttctttaca agcccctccg tattattctt acctccatga tgttatcggt       420
     ggtgatcata tctttggagc attgcaaaga tagaattgat gttatttcgt ggtatttttg       480
     agtgttacaa acaaattaag tacagatcgt ggtttatttt ttagaacaat gcctccattg       540
     cgtcggcgta atatcggtcg gcgtacgtgc aacgcaatct tactacgtga tcgtagtcaa       600
     tgagaccgac gatcgtacac agcgcttgga ggtaaatcga aaagaaattc tcaagcgcga       660
     tccgttatga ctctgaaaca aagggtacag tcgagttcga ctccctcagt tgcagtttac       720
     gcacgaaata atttgggtcg tcgacaaaac agacggccac gcgtggcaat tataattgaa       780
     cgtttgggga cagatacaat ccagcagtcg attacgcagc ggatgcatca gttggcttcg       840
     gaacaaactg tcgccatcta aaatttcatt ggctatctca agctttgcca cgattggtcg       900
     gcttcattcc cacgatccag cagctgttgc caacatagct ataccacgca tgtgtcgcgg       960
     attgtaaaat tttaccggta tgtagcaatg ttgttaatcg tgtttcaatt agattcctaa      1020
     taagacaaga aatgaacgca acacaaagac tttcgaaacg ttgtattgcc atccacttat      1080
     tttatttcaa ttgttttgtt tcatatggaa tttctatcat taaagtatga tcatgctaca      1140
     attactttgt atctaattca aaaactctta agaagatata cacgtgttat aagaaacatt      1200
     tctatactgc tcgctgcgag aaaaacatgc taagctgtgc tgtaaacatg tgcggttttg      1260
     tttttttctt cccagtcatt tttaacataa aacaggaaag ttgtttttat gcctacactt      1320
     ataatcatac ctgttcgtac aatgcaacca ttaaacgtgc ggccattgaa gctactaacc      1380
     tcacagatag agcagctcga aacgtctctc taataacccg tttccaattg atttacccgt      1440
     ccattttgac ttctatcccc aatcaagttc cgattgcaat aacaataaat aagatcagag      1500
     agctgggaag gagagtatgg gaatgaaatg gatttaaaaa ggggagatga tatagacgca      1560
     gagaggaagg ggaggagatg gatatggtgt ggggtaagag ggagtggtgt gaaggtaggg      1620
     ggaggaggag atggacaaag gaaggggaag gaagggatag acatagggag aagctactgc      1680
     gaagcgttgc cgggtttgct ag                                               1702
//
ID   Helitron-N1C_PPo repbase;    DNA;    INV; 52 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_PPo; Helitron-N1C_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-52
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2737-2737 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. It is a 3' end portion of
CC   Helitron-N1_PPo-like element.
XX
SQ   Sequence 52 BP; 12 A; 10 C; 14 G; 16 T; 0 other;
     ggctactttt ttatcttaat attgcgtgga cgaagtcgcg ggcaacagct ag                52
//
ID   Helitron-N1D_LMi repbase;    DNA;    INV; 872 BP.
XX
AC   .
XX
DT   24-JUL-2014 (Rel. 19.12, Created)
DT   24-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1D_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-872
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3200-3200 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 872 BP; 276 A; 162 C; 218 G; 216 T; 0 other;
     tctatatata taaaagaaag tcgtgttagt tacactattt ataactaaag aacgtctgaa        60
     ccgatttggc tcaaaattgg tggggaggta gcttagaagc aggagacgga cataggatac       120
     tttttgtccc gtaaaatata agaatttgag aaaaactgaa agtacgcttc cagctcggat       180
     cagtctttag attctccaac aatcagctta ttcattcgct actcgcctag cgaccagata       240
     cgttgcaacg gagcgaacaa atacgccaag gaggttagaa taaagggaga tggcgttatc       300
     tatgctgaga acaggcattg cttgaagcca gagagcaact ggaaaatcta tcagaaaatt       360
     tcagaattag agaaaaactg aaagtgggtg gaatcgcgtc gtaataatga cccttcacca       420
     ttatagtgca aaatctaata tcggtcggcg tttgcgcaac gcaatcctac tacgtaatcg       480
     tagaggcaat gagacagcaa cgataatcac aggaaagttc aaaggagagg atgttctgat       540
     tccaagaata ccactgattc aaaccgactt gccgtttcat tttaagcgtg accagtttcc       600
     tgttcgcccc agtcgttgga cgtttgtgga ataaatcttg aatcgccgtg tttttcccat       660
     gggcagttgt acgtggcgtg ttcaagagtt ggtaaaccat ctgcactgtt cgttttctct       720
     ccggacggaa agacatcgac taaggcaggg ggaaggaagc gatggggaaa tagaagaggg       780
     aggaagggat agacataggg agaagaagag aagagattag cgtatatatc ccatacacat       840
     tagctactgc gaagcgttgc cgggtttgct ag                                     872
//
ID   Helitron-N1D_PPo repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_PPo; Helitron-N1D_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2738-2738 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Termini are T/TC..CTAG/TA. ~88%
CC   identical to Helitron-N1_PPo.
XX
SQ   Sequence 184 BP; 61 A; 27 C; 34 G; 62 T; 0 other;
     tctatactaa tattataaag aggaaaactt tgtttgtttg attgtaatga aataactcaa        60
     aaactactgg gccgatttca aaaattcttt caccattaaa aagctacgtt gtcagtgagt       120
     aacataggct atgttttata ttatttttta atttcacgcg gacggagtcg cgggcgaaag       180
     ctag                                                                    184
//
ID   Helitron-N1_AAe repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.01, Created)
DT   24-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Helitron family from Aedes aegypti, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-254
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-254
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 147-147 (2021).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to the consensus.
XX
SQ   Sequence 254 BP; 74 A; 43 C; 62 G; 75 T; 0 other;
     tctatataaa taaaaatgga atgatgtttg tatgtcacga aatggctcat gaacgggtca        60
     acggatttga acgattcttt ctccattttg ttcgtcaagg gttccgacgt gtttgtgtgt       120
     atgaaagttc caggatattc accgaaaaag tcgtaaaaac gagagtgaac gggactgtca       180
     ttttatatgg gacgattcat agcggttttc aacagcctac ttgatggcaa gacgaagttt       240
     gccgggacca ctag                                                         254
//
ID   Helitron-N1_BM repbase;    DNA;    INV; 432 BP.
XX
AC   .
XX
DT   05-NOV-2012 (Rel. 20.10, Created)
DT   06-NOV-2008 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-432
RA   Bao W. and Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3211-3211 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 432 BP; 155 A; 71 C; 72 G; 134 T; 0 other;
     tctatactaa tattataaag aggaaagatt tgtttgtttg tattgaatag gctccgaaac        60
     tactgaaccg atttgaaaaa ttctttcact gtttggaagc tacactattc ccgagtgaca       120
     taggctataa tcttttttga aaaaaattag ggatccttac taaaactcca ataatgtaac       180
     ccaaggtgta aaaaaattac ctaaaatatt ctttacatcg cgtgccctgc gaaaactatt       240
     gatgatagaa taaaataatg tactacgact ttgtagaaca cattattatt tacaaaaagt       300
     gtcgcgacag catatgtcta actattatag ttatgccgca ataagtgttc ttttatttaa       360
     aaaaataaaa caacgtcaaa tatcgttgaa atttttgtta aagacccgag cggagccgga       420
     gcgggccgct ag                                                           432
//
ID   Helitron-N1_BTa repbase;    DNA;    INV; 1796 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1796
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 634-634 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1796 BP; 487 A; 352 C; 398 G; 558 T; 1 other;
     tctatactaa taaagcagac ttcacgttga ttgactcact cactgactga ctgactactc        60
     actcactcac gtatcagcgg atctcgtgaa cgggaggccg tgtgaccctg agattccgca       120
     ctgggatccc tctctacccc gaggcgccgg ataagggagg atttcgcgat ccgcccgccg       180
     gttcgcggga tatcgcggtc cgcgtgggtc gattttcccg taaggacaac gggtgcgaga       240
     gagagtgcga gcgagatgga gcgatttccg cgtttcgcgc tgaaagacag ctgataaatt       300
     ttacgtgtgt tcttctggta cgcgcaacgg gtgcgaggaa gatggaagga gttaagcgtc       360
     caacgagtgc gaggaagatg gaacgagttc ggcgtcgcgc tgttggaaac gccgcgccat       420
     gattgttgcg agctccgact cgtgcatccg ttgccgggct actctctcag ggatgtgaaa       480
     atctggaaaa tctgtctatg catcggcata gaataaagag actgacgtag tctcttcatt       540
     ctacggcatt ggttcgcgat tttcgcgatt ggttcgcgca ttggttcgag tktccttccg       600
     tttttttttt tgcaagatta gtgaaaaatg tgctccgcgg aacctttcgt ttcgttttgt       660
     tttgttttgt tttttttttt aaaaaattta cctgctcaag ttcgaaagta aaaaaattgt       720
     tgtgatttag tcttcacgtc gcctggggtt actttttgtt acttttatct tgttttgaaa       780
     tgattaaggc aaattctcgg gaaattttga gagaagctgt tgcttggctt cattaataaa       840
     ataaataaat aaaaatggaa cataaagacg gtgtgcaacg cttcaatcgg aggagaagcg       900
     ggggtttcgc gcgcatttca tcaatatttg actccgatcg tggaaccgaa acacatgagt       960
     cttacttgca aaattttaaa tcatcgctaa tgctcttttt ttttcttttt ttttttttta      1020
     atttcaaaac attaaatctt atatagggaa accgatggtt acatcccata gttctcgtga      1080
     aatttagatt ggattcttcc aattcgtcac ttttaacaag cagaattgaa gcgagcaact      1140
     atttgaactc cggagtgggt atgtggtatc atacaaaatt gaaggaaaat catacgtttt      1200
     cgcccatctc aagtaacaga tgtttatgag ttttatgcgc acatttacgt agtcttaatt      1260
     gagtcagaaa ttcgcgtgta tgccacgata ttgatgtgaa taacgcgcaa ttgtaatgat      1320
     cttaaaaatt cgctaggaac acgacgtatt tgccgtgata ccgtggtgat tatcgtgtaa      1380
     tttctaattt gttttacaaa atccctggaa aaatcaagtt ttctccgcga tgtagatgac      1440
     aaacccgcca ttgctgtgaa ttaaacgaaa ccgctggcta aatcccgtaa ttttcgcggc      1500
     tgaaactcac cagctaactt caattgaaca ttgaactgac aaaagtaaca aatcttcatg      1560
     aaaataacca acttttgatt gggtattttt tattattata attatcatgt gagcttattg      1620
     cagaacggac caaaatagca gcatactact aatctctact ttttaatcaa accagtgcgt      1680
     ctcgccaatt ttgaaatagt agataataat tcagaaacac aattagtaac tgatcactaa      1740
     tcacagtgat tgctgatggt ggggttttcc tgtgcgtagc acgggtttcc tgctag          1796
//
ID   Helitron-N1_DAn repbase;    DNA;    INV; 853 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Helitron from fruit flies.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-853
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 296-296 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 853 BP; 234 A; 158 C; 178 G; 282 T; 1 other;
     tttttatacc cttgcagagg gtattataat tttggtcaaa agtgtgcaac gcagtgaagg        60
     agacatctcc gaccctataa agtatatata ttcttgatca ggatcacctc ctgagtcgat       120
     atgagcatgt ccgtctgtcc gtctgtctgt ttctacgcaa actagtctct cagttttaga       180
     gctatcgagt tgaaactttg cacacaccct tctttccttt gcaggcagta tataagtcgg       240
     aacggccggg atcggtcgac tatatcctat agctgccata taactgattg atcggaaatg       300
     ccataacttt ggtgtttttt aagttagagg gttgggactt tccacacatg ttatatttga       360
     ccaaaatatc ttatgtacaa aatttcgtaa ggatcggccg actatatcct atagctgtca       420
     tagaacgatc gaaattggca taactttggt gttttttaag ttagaaagat gggatttggt       480
     acagattcta ttttgggaaa aacaatctga tttgtcgaat ttcataagga tcggccgact       540
     atatcctata gctgccatat aactgattga tcggaaatgc cataacttcg ttgtttttca       600
     agttagaggg ttgggacttt ctgcgcattc tatatttggc caaaatatct tatctgcaaa       660
     atttcataag gatcggccga ctatatccta tagctgtcat akaactgatt gatcggaatt       720
     ggcataactt cggtgttttt caagttagaa ggatgggact ttcggtggag attcctcttt       780
     gggcaaaata attcgatttg ccaagtttca taaggatcgg ccgactatat acgatagccg       840
     ccatatatct gat                                                          853
//
ID   Helitron-N1_DAzt repbase;    DNA;    INV; 1079 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila azteca genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1079
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 586-586 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Both termini may be different by
CC   several bps.
XX
SQ   Sequence 1079 BP; 343 A; 251 C; 186 G; 299 T; 0 other;
     tgtgtgtaac gcacagaagg aagcgtttcc gaccccataa agtatatata ttcttgatca        60
     gcatcaatag ccgagtcgat atagccatgt ctgtctgtcc gtctgtccgt ccgtccgtct       120
     tcatttgcgc ctatatctca gagactatta aagctagagc aaccaaattt tgtatccagg       180
     cttctgtgtt atcacactac tccgaatgta tttcaaaatt tcgccccgcc cacttccgcc       240
     cacacaaagg acgaaagtct gtggcatgca caattttaaa gatacgagaa aactaaaaac       300
     gcagaatcat agagaatgac catttctatc agagtgttga atctggatca gatcggatta       360
     ttaatatagc cacaatgaag aaaaccattt cgaaagtcat cgttccctct cgctctctct       420
     cacacgcgac cctgtcggct ttgcctattc gtccaaatga gcgcctagat ctcagagact       480
     ataagagcta gagcaaccaa actttctatc caagctcctg tgatatcact tcaatacaag       540
     tgtatttcaa aattttgcca cgcccccttc cgcccccaca aaggacgaaa atctgtggaa       600
     tccacaattt ttaagatacg agaaaaccaa aaacgcagaa tcatgaaaaa ttaccgtatc       660
     tggcagattg ccgattctgg atcaggtctg agcattatta tagccagaag gaacaaatta       720
     aatttcagtg gctacccaac ggcagccaag cgattccctc tctctctcgc acacacttcc       780
     atgtctcttg tatgtagtta tacatgtgta tgtaaaaatg tagcagccga agtaaaaatt       840
     atatgtaaat aaaaatggaa acagataact tctaaaatat aaaaatacag catagggttc       900
     gacttaattt tttgaaattt tccattttgg ccaaaattta attcgtctct tttgcgaaca       960
     tataattaat taaataaatc gtaagctcat atgtatacat aaatacgtat atactgactg      1020
     agtaccgggt ataaagtaga gccgcggcca ttgccgcggc tcacaacgtt ccctctcgt       1079
//
ID   Helitron-N1_DBi repbase;    DNA;    INV; 588 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Helitron DNA transposon from the Drosophila biarmipes genome.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-588
RA   Kojima K.K. and Jurka J.;
RT   "Helitron DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 808-808 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 588 BP; 160 A; 149 C; 118 G; 161 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgtcggaaag tatgtaacag        60
     gtagaaggaa gcgtttccga ccccataaag tatatatatt cttgatcagg atcactagcc       120
     gagtcgatct agccatgtcc gtctgtccgt ccgtccgtat gaacgctgag atctcggaaa       180
     ctataagagc tagaacattc atacttggca tgcagattcc tgggcttcct gcgcagcgca       240
     agtttgtttc agcggggtgc cacgcccact ctaacgccca caatccgcga aaatctgtag       300
     cgcctacagt ttttatgata gaaacaaaat tttaactgaa atgtgtttgt ctcatcaata       360
     cctatcgacc accaaaaaaa aggtgccacg cccactctaa cgcccacaaa cggccaaaac       420
     gcttaaatct gtctgccgcc cacataacat ctactgaaat agccggtagg tggcgcccta       480
     aaatatcgct ttgctgctta tatatcttca ttttcctttt gctcccttaa gctgagtaac       540
     gggtatctga tagtcgaggc actcgactat agcgttcttc cttgtttt                    588
//
ID   Helitron-N1_DBp repbase;    DNA;    INV; 1479 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Helitron transposon from the Drosophila bipectinata genome.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1479
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 622-622 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1479 BP; 394 A; 293 C; 292 G; 500 T; 0 other;
     ttataccctt gcagagggta ttataatttt ggtcaaaagt gtgcaacgca gtgaaggaga        60
     catctccgac cctataaagt atatatattc ttgatcagga tcacctcctg agttgatatg       120
     agcatgtccg tctgtccgtc tgtccgtctg tctgtccgtc tgtctgtttc tacgcgaact       180
     agtctctcag ttttaaagct atcgtcttga aactttgcac acacccttct ttcctttgca       240
     cgcagtatat aagtcggaac ggcccggatc ggccgactat atcctatagc tgccatataa       300
     ctgattgatc ggaaatggta taactttggt gtttttagag ttagagagtt caaatttgac       360
     atggagctat ttttggcaaa acattacgtc atgccaaatt tcataaggat cggccgacta       420
     tatcctatag ctgccatata actgaacgat cggaaatggt atttggtaga aatatcaact       480
     ttcgtatttt tgaagataga agcttgggac tttttttaga ttttgtattg taataaattg       540
     gattatatat tcctattccc ataaggatcg gccaactata tccgatgttt gcgatatata       600
     tccggtttta actgcaaggg tatataaact tcggctccgc ccgaagttag ctttcctttc       660
     ttgtttggtt taattatacc cttgcagagg gtattataat tttggtcaaa agtgtgcaac       720
     gcagtgaagg agacatctcc gaccctataa agtatatata ttcttgatca ggatcacctc       780
     ctgagttgat atgagcatgt ccgtctgtcc gtctgtccgt ctgtctgtcc gtctgtctgt       840
     ttctacgcga actagtctct cagttttaaa gctatcgtct tgaaactttg cacacaccct       900
     tctttccttt gcacgcagta tataagtcgg aacggcccgg atcggccgac tatatcctat       960
     agctgccata taactgattg atcggaaatg gtataacttt ggtgttttta gagttagaga      1020
     gttcaaattt gacatgtgag ctatttttgg caaaacatta cgtcatgcca aatttcataa      1080
     ggatcggccg actatatcct atagctgcca tataactgaa cgatcggaaa tgacccaact      1140
     ttcgtgtttt tgaagataga aagctggaac ttagtacaga tttaattctt ggtcagttga      1200
     tccaacctac caaatttcat taggatcggc cgactatatc ccatagctgc catataactg      1260
     aacgatcgga aatggtattt ggtagaaata tcaactttcg tatttttgaa gatagaagtt      1320
     tgggactttt tttagatttt gtattgtaat aaattggatt atatattcct attcccataa      1380
     ggatcggcca actatatccg atgtttgcga tatatatccg gttttaactg caagggtata      1440
     taaacttcgg ctccgcccga agttagcttt cctttcttg                             1479
//
ID   Helitron-N1_DEl repbase;    DNA;    INV; 630 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   16-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-630
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from Drosophila elegans.";
RL   Repbase Reports 12(4), 431-431 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. It shows similarity to
CC   Helitron-2N1_DVir in sequence and terminal structure (It is
CC   inserted between TTT and TTT and ended with TTATA...CTTG). It is
CC   a basic non-autonomous Helitron family and it has many
CC   derivatives with duplications of internal sequences. One major
CC   derivative family has a duplication of the sequence 1-328 of
CC   Helitron-N1_DEl, and another family has a duplication of the
CC   sequence 335-482.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 630 BP; 200 A; 111 C; 103 G; 216 T; 0 other;
     ttataccctt gcagagggta ttataatttc agtcagaagt ttgcaacgca gtgaaggaga        60
     catctccgac cctataaagt atatatattc ttgatcagca tcactaggcg agtcgatcta       120
     gccatgtccg tctgtccgtc tgtccgtctg tccgtctgtc cgtccgttta tatgcaaact       180
     agtctctcag ttttaaagct atctgcatga aactttccca aaagttgtct ttctattgca       240
     ggtagtatat aagtcggaac gagccggatc ggacgactat agcatatagc tcccatagga       300
     acaatcggaa aaataaatga aaaaaaatta taacttttct gttttttaat tttttgttta       360
     gttcttcgac atatagcaat ggttaaatat ttcagaatta tggtttaaat tttatcaaaa       420
     tcggacgtct atatcatata gctcccttag aaataataaa aatatataaa ataactatca       480
     aataattgag ctgcaaatca tcatagcttc aatgttttta aacatatacg aaagtaaatc       540
     ataattttaa tgttttcaaa aatgtttaat tcttgcaata gctgcaaggg tatatgaact       600
     tcggcttgcc gaagtttgct ttctttcttg                                        630
//
ID   Helitron-N1_DHyd repbase;    DNA;    INV; 1119 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 25.08, Created)
DT   25-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila hydei genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-1119
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2246-2246 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus.
XX
SQ   Sequence 1119 BP; 304 A; 200 C; 236 G; 376 T; 3 other;
     ttataccctg atcccattaa aaatgggaaa tcagggtata atggttttgt gcaaatgtat        60
     gtaacaggca gaaggaggcg tggcagaccc cataaagtat atatattctt gatcaggacg       120
     acaagccgag tcgattgagc cctgtccgtc tgtctgtctg tccgtctgtc cgtctgtccg       180
     tctgtccgtc tgtccgtatg tgtgaacgcg tggatctcag catctataag agctagagac       240
     ttgaaatttt ttttgtaggt ccgtgtatag cacgcgcagg tcaagtttgt ttcaaatatt       300
     cgataactat tcgcatttaa ttgttatcga ataaaaacat tattgaaatg cagtaaataa       360
     attatatctc gaacgtctta agagctagag cctccaaatt ttgtatttag tsttatgtat       420
     attttatgca attttgattt ttgttggatt ttggataccg gctccaaatt cccccaaatt       480
     cttagaattt aagtttagtt ggaactaggg ccattatgtg aaggcgtttg catctcaacc       540
     aagccaatag gatatgtaga tcatatgctg aaaatttcat taaaatccat taagtaaaac       600
     agaagttatt aaacaaaacg tttggccaat ttgcaaaagc acatgtcagc agcgccacgc       660
     gcacgcattt ttcctatgcg tgtgcacaca tacattcaaa tgcgtgtatw cttttctatt       720
     ccaagaattg aaattgcgat tgaattgtgc tgaattatta gctgctactt atgttcaaat       780
     ttgcaacagc tcgcgtaaga agggcagtgg ctgcgttggt agaggcgcck ctcggatgca       840
     gcttggtccg ggttcgagac cagaggagat gaaatgtttt ttattgtttt atattattta       900
     tttatttttt ttttttagtt atgaagtggc ggtgttggta gagtttgtgc acgttgcgca       960
     aataatccgg gttcgaatcc tggtctcgca atgtcgattt ttatttgttt tctttttttt      1020
     ttaatactcg atacaaacta cggaaaatat tacaaaactc aaaggactgg gatcagggta      1080
     tctcctagtc gggcaccccg actagagctt tcttacttg                             1119
//
ID   Helitron-N1_DSer repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1303
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1849-1849 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The termini are TA|TC..CTAG|TA.
XX
SQ   Sequence 1303 BP; 441 A; 259 C; 241 G; 361 T; 1 other;
     tccgtcaatc ttgaacaaca atctacatgt tcaatacgca aaaatggacc tattggtaaa        60
     ttactacaag acgcctcatt gattatgtgg gacgaatgca cgatgagcca tagagcacat       120
     atagaggccg tgaacagaac cttacaggat ctaaggaact cctctgcagt catgggcggg       180
     attacttttg tatttgctgg agattttcga cagactctcc ccgttattaa cagaggcacg       240
     cgagcagata tcatcaaggc atgcttgaaa tcgtctccca tatggactac gattgaaaca       300
     ttaaaattaa ggacaaatat gagagctcat cttcatggaa tcactgatag cgatttccca       360
     cagcaactgc taaaacttgg ggaaggaatt tttccaactc caaatttaag cggtcattgt       420
     gacattcttc tggatgagtc tctaggccaa atactccata atttggaaaa tttaatagat       480
     tctgtatacc ctgatatcga gaatttgcac gaaagagact tccattggct gtgttctcgg       540
     gctatagtat cacctaagaa tgatactgtc aatgaaataa ataatctgat tgttcaaaaa       600
     gtccccggcc aaacaaaaac atacaaatcg atcgacactg taacgaatat tgaagatgca       660
     gtccattatc cacaggaatt tttaaattcg ttgaaccctt ctggactgcc accccatgaa       720
     ttgacgttaa aaatcggaat cccaatcatg cttttaagaa atttaaaccc tccgagcatg       780
     tgtaatggga cgaggctgct tattaaggag ttaaaggaca atttaatagt agcaactatt       840
     atcactggcc cagcaagtgg tcaactagct catataccga ggataccgat gatcccaact       900
     gatctgccaa tcccatttaa acggcttcaa tttccggtaa aaacatcttt cgcattaaca       960
     attaacaagt cccaaggcca aaccttcgaa ttagtaggga tcgatctgcg aaataaatgt      1020
     tttactcatg gtcaactgta tgttggtcta tcgcgagtcg gagcccctga aaatcaattt      1080
     attttgctgc cacaaaataa aacaacatca aatattgttt acagagaagc wctaacaaaa      1140
     taaatgtatt ttcttttagg gttatgacct caataattga aaaaaaaaaa aaaaaataaa      1200
     ggatgaatat gtgtcatatt attattatta ttatgaatgt gttaaaattg acaaatctaa      1260
     atgtaatgtt taatgcccgt gcgaagccgg gacgggccgc tag                        1303
//
ID   Helitron-N1_DT repbase;    DNA;    INV; 892 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   26-JUL-2021 (Rel. 26.08, Last updated, Version 5)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_DT.
XX
NM   Helitron-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-892
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1377-1377 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 892 BP; 247 A; 205 C; 184 G; 256 T; 0 other;
     tatacccgtt actcgtagag taaaagggta tattgtattc gtgcaaaagt atgtaacagc        60
     tagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcgctagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtctgtccg tctgtccgtc tgtctgtctg       180
     tctgtctgtc tgtctgtctg tccgtatgaa cgctgagatc tcggaaacta taaaagctag       240
     aagattggca ttttgcacgc agattctagg agctcctacg cagcgcaagt ttgtttcaaa       300
     aaggtgccac gccccctcta acgcccacaa gccccctcta acgcccacag ttttgaagct       360
     attatgaaaa tagtaactga tatgtattcg cttcgtcaat acctatcgat tggccaagta       420
     aaaaattgcc acgcccactc taacgcccac aaacccaata aacgcttaaa cctggccagc       480
     gcctacattt ccgcctttca tgaccagtag taccaatatc tggcggtaga tggcgcaata       540
     caatatacac tagcgccatc taggaaatgg cattggaaaa aatctgcctt tttttctgtg       600
     gtcactctaa ttcacattat gttaatgcaa attttaaatt atttgaaatg gggcgcgcat       660
     tttgtctctt tttgctcgta tacgtttttc acaagtgcat tcacctgcgc tagagagaga       720
     cggaagatgt gctaggcaga attgaaagtt ctagaaagcc tcttctagaa agagatccct       780
     gggtaaaaat cgagcggcga aaaacatata agaaggcata tttctattaa gttgtttagc       840
     tgagtaacgg gtatctaata gtcgaggcac tcgactatag cgttctctct tg               892
//
ID   Helitron-N1_HSal repbase;    DNA;    INV; 3508 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Helitron transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3508
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 836-836 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to the consensus. The 3'-terminus is not
CC   determined.
XX
SQ   Sequence 3508 BP; 1035 A; 636 C; 751 G; 1086 T; 0 other;
     tcaagaggca cggtagtgcc tcgcgccaag ttcaagcgca acgaagttgc gcccgaacga        60
     cgcgaggcat accgtgccta tattacgcga aactgcgagt tgaaacgagg tgagatattc       120
     atatctcagc aatggctaaa ccgatcgagg ttttttcagt cccaatcgat tcggccttaa       180
     aaaataggaa gaaaagtgtc cttgtgtttt ttgtgtacgt tgtctctaaa tgtagatatt       240
     ttaaaataaa gtccaaatca cggaaaattt cgattcagta agaaagtaag aaacgctaga       300
     ccgcagagga gaggggattt gtgcatctca cttttccgac accagaggcg ttacaagcgc       360
     gctgaagaag cagcgagtgc gagtgagcaa gcgatagaga gtaagagaga gaagaatatt       420
     gctagaatac aggagtagaa atgtgcgaga aagagaaaga gagcgagagc gagagagaga       480
     gagagagaga gagagagaga gagagagaga gaagccaaga ttttttgcat taaatatttt       540
     ttattgcatt gttataataa ctaatttatt ataataacaa gtaaaataac cataaaactc       600
     agtgttctag taaataatga agacactgtt tttgaagtac cggactgtgt atcattggga       660
     gttttcgata catttatctt cagattgcaa atcgctctca tttgcagagt tgatgttgag       720
     tagagttttt cagttgatgc tattgttttg ttatatcatt tttttgtaga acagttttgt       780
     agagttttat ttatagtatt caatagaaga atttattgtt agagatataa gttttacttg       840
     tacaaactta ttacttgtat aacgaaaata ataaattaca ttgcccaaag atacacgctc       900
     aggtgcggta cgatgcacag tactaaaagc gtaaacattg ccgtttatat catttctttt       960
     gtaaagtagt gttgtagagt tttattatag ttataaattt tacttgtaaa attttatgtt      1020
     acatatataa cttgaaaaaa aataatttga aatttctaaa aataacacaa tacgtgttgc      1080
     gcgtgtactt ggcgcctctt tttacctttt tgtttaaaaa ggtaagtttt atacaacgtt      1140
     acgggctctc tgagacgcgt cccggcggga caaggtcgcg cgactttgaa aacaacatgt      1200
     tcataagtac gcaactgccg cgaccgtctc cattattgtt tacgccgcgg cggcggacgg      1260
     atcggcggat cgccgcgcgt aataatttcc gaattttcac gctcgatcac agtgtacgcg      1320
     cgcgtgtaac gtgtaatatt cgtgcgtgtg tgtgtgtgtg tgtgtgtgtg tgcgtgacga      1380
     tccggagcat cttgagcaat agcagtgttt catggtcttt aaaggtaaac ttttattggt      1440
     taacttggtt aagttgaaga agctaatttg tagtctcgag tcttcgtact cttgatgcgg      1500
     ggcgcatttg tcgctgtaat actaatgagg aaactcgctt tttgttacag atctgctgga      1560
     gtttgcggcc acgcgatagc tgcggttacc gggacgcagt ttcgacggac gccgatgccg      1620
     caccggagga tccggttcgg gccgagcaga gtcggcttga aggtgaggtt caccgatcgt      1680
     ttgtacattt cttcttgatt cattgcgatc gaaaaccgag cgattggaat aaaagccgtt      1740
     gaattacgat ggcaaagggt caacgtttgt atctgcgcgc gcgcttccgc gaactgaact      1800
     caacctaacc taacttttaa cctaacggtt taactaacga aactatattt tttgttacag      1860
     atccgcagca gaacgcggct gactctgtct gctgtgtatc ggtgagtcag agaagaaaag      1920
     acatttttat ggtgatgggt gtttgcaata tctcgagaaa atcaatgcga tttaattata      1980
     cttttttcac acgttgctcg aaataatcag gagatcgtgt ctttcaatga ccgtattaca      2040
     caacagaatc tttaagatat aatatatatt tctctctttt atatttactc tgaatcatta      2100
     gaagatacag atataaatgc tttagtttgt tattatattg aaatcaagat atggaattat      2160
     ttgctgcgat tcaatcaata taactcctgc ttcgagtagt gtgtaatgtt aaaatttgat      2220
     cagaattgcg ccatcgcacg tgaaattcac cattatttat cttattcggc ttgataaatt      2280
     ttatgtctgt cgagtttatc aattttctac atttttcacg cgtgtcagaa gcgataatat      2340
     ttcatttgaa attaccgata aattcggtac gcgcgtttat ttacattaca acttagtcct      2400
     tacgaaacaa gacgtgcgtt tctttcgaat taccgttcgc gaaacaaaac attttcgttt      2460
     tttctctctt gtctaaacgt cgtaattttc attcgcgatt gattctacgc gaatcgcgtc      2520
     tcacgtatac attctcggaa cgttgcaatt tatcgtgttt acttcttttt gggataaaaa      2580
     tctcatctct tgaacgcgac catatacgct tctttgtctc gccattcctt ttccttaaat      2640
     cccatcgaaa ttaatgaaag agaaaagata aacaaagaga aagaaaaagc gacaaaatat      2700
     tgtgaaaaaa gaaacttgtc ctggatgctg aggagactgg acattggacg gatgcagagt      2760
     cacaggagtc aacgaaagtc ggtgagtgtg cagatcaaac gctcagaaag cgtcatgttt      2820
     tataatgcat gctcatatat aaatcgcatt ggttttcggc cagagataat aaaaaatagt      2880
     gcgcgataat atgcgttcat atctagttta ataaaaatat gaattgcgag aagcactgtt      2940
     tgcttcctct ctgatcattg cggaaatatt tattctgcga aaaattatac gcggaacctt      3000
     gagagtgata atcgataaga tatatatttg acgaatgaaa aaccatactg attgcactga      3060
     agctggcttc cttttgcaac actttatacg aatattaatc tgatattttg tgcataatat      3120
     ttatgcgcag tgtcaattta aaaaaattta acgaatcact gctacggcag tctcttcctc      3180
     gatatacacc gacatatttt ttctcatgct cgtgcttcgg cttcgagcta gcaaaaatac      3240
     tagcgaccgc gttcctcgtc aatgtgacct cggcgatgtt tacacctcgg caggcgcgat      3300
     cccgtgctcg ttgtttacgt ccgataattt tcaacatgtc catttctttc cgcgaaggcg      3360
     cgtttgatta accgggctag atggtatccc aataaagaga agtgcctgac agttcttatc      3420
     ttatcccgta ccatctggtt ttacgtcagc gcgaatgatt acaattacat cgcgcggtaa      3480
     acgaaaacaa gcgagacggt gttttaca                                         3508
//
ID   Helitron-N1_LHu repbase;    DNA;    INV; 1742 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Helitron DNA transposons from Linepithema humile, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1742
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 355-355 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements >94% identical to the consensus. The 5'-end is not
CC   determined.
XX
SQ   Sequence 1742 BP; 579 A; 263 C; 259 G; 640 T; 1 other;
     taaaatatga taaaatatag tatataatat aattaattat atatacgaca gctttatgta        60
     caagagtttt atagaagagt tttatagaaa tagtgtacaa gttttttcat agttctttag       120
     tcccacttgg tgccatttcc tgatatcata tttttttgta agaagtatat agaatagctt       180
     tttttgaaaa ttttaatata tacgacaggt ttttttgaaa ggtttaatat atacgacaat       240
     ttttttgaaa agtaaaacaa tactgttttg ttttagttgt gacaagagcg tgtacttggc       300
     gccttttttt tacctttttt taaaaaaggt aattttttga tagatatcat tctttttttt       360
     taataatata tatacgacag ctttttttat ttaatatata caacaatttt tttgaaaggt       420
     aaaacaatac tgttttgttt tgattgtaat aaaattgact ggaaattata aatattgttg       480
     gaactaattt agtatacata gaacagaaat attaaacgtt tgagctattt aattttattt       540
     attttagaca aatcatacac taaagtctct aaacaattgt cacataaggc atagtgataa       600
     atggtgtgat tgtataaatt ttaattttac catacattct gtcaaaaaag cacatgtttc       660
     gagactttag tgtatgattt gtctaaaata aataaaatta aatatcaagg ttcaatattt       720
     ctgttctatg tatactaaat tagttctaac aatatttatc atttccagtc aatttcattt       780
     tgtgttttac aagatttttt gtttagtttg tgtttataat cttttttcta tggataaata       840
     aaattcaata atatacctaa aatatgatat gaacattttt cttacactta attctctgcc       900
     cacactgtga tgtggataat tttgttgtca accatagcgt taactacaga aggcgactta       960
     tgctatattt tttwaaatat aaaattgact gaagaattat aaatattgtt gaaactaatc      1020
     taggatactc agaacagaaa tattaaactt tgagctattc aattttattt attttagaca      1080
     aatcatccac taaagtctcg aatcatgtat gaataataac ctgcaaaata aaaaattttc      1140
     aaaggtgtag tagatactta ctaagacatt cacattcacc aacatatcac ttatttcatt      1200
     taatacgaat ttctaacaaa tttggtcact cgcactacac tgctctggat taataagcag      1260
     tcttgagtgt gcaccaaagt aacagagcaa tgtagtgcga gtgaccaaat ttgttagacc      1320
     gaattcacta ttattacttt tttataacac tttctgatct gaaaggttat gtaaaaatgt      1380
     caaatcgtaa gcgcgcgccg cgcggcttct cagcgccatc agcgcaccta acgtcagaaa      1440
     tcggaaactg gacattttag caggacatcc tagaaaagac acgattattt cagacatttc      1500
     gactttggac tattataact ttttttctac agcacctaca gtaaaaacaa gcatactttt      1560
     cttatgtaat ttgggtatgc gctatcgatt gagcctatta tcaactcaat cggcccagcc      1620
     gttattgaga tccgataatc tcggctcgtc tcaactttcg ggctcgcgta aagatacacg      1680
     gtcggtcttg cgcgcggcgc gctgcgcgtg aacttggcgc gagacactac cgtgtctctt      1740
     ga                                                                     1742
//
ID   Helitron-N1_LMi repbase;    DNA;    INV; 2022 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2022
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3229-3229 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 2022 BP; 648 A; 357 C; 435 G; 582 T; 0 other;
     aagtcgtgtt agttacacta tttataacta aagaacgtct gaaccgattt ggctcaaaat        60
     tggtggggag gtagcttaga agcaggagac ggacatagga tactttttgt cccgttcgac       120
     cgcgttcccg tgttacgtga cataaaactg aaagtacgct tccagatcgg atcattttct       180
     agattctcca agaatcagct tattcattcg ttactcgcct agcgacaaaa tacgctgcat       240
     cggagcaaac aaatacgcca aggaggttag attaaaggga gacggcgtta tcaatgctga       300
     gaatacatga gaaacatcat cttcctcagt aagtttaatg tgtctgaaac taaattatta       360
     tgcggattat caaaataata ttatttacta tgaagagaaa acaactgttg ccatctaaaa       420
     tttcattggc tatctcaagc tttgccgcga ttggtcggct tcattcccac gatccagcag       480
     ctgttgccaa catagctata ccacgcctgt gtcgcggatt gtaaaatttt accggtatat       540
     agcaatgttg ttaatcgtgt ttcaattaga ttcctaataa gagttcatta ttcacttaca       600
     ggtcaggaaa caaacagacg aatattgctg ccaattacaa aaaccatact atctggttga       660
     gcgaactagc cattttggca gcgaaaaata aggacgtaga cgatttgaac ataaaaattc       720
     aaagccaaat cgctggccaa taacatacat ttattaatat tgtctcaagg aaatgtatta       780
     ttgttgatat ttgcattcat ttacttcgat ggtttccatt tccgatcctg ttgaagtcgt       840
     caattatcca acaaaattcc tgaattcatt ggatttgcta ggaatgccac cgcacgattt       900
     gcaaatcaag gttgggtctg tgataatcat gttacgcaat ctaagccaac cgaaactatg       960
     caatggaaca agactctctg tgaagaagct gatgaacaat gtgattgaag caacgataat      1020
     cacaggaaag ttcaaaggag aggatgttct gattccaaga ataccactga ttccaaccga      1080
     cttgccgttt caatttaagc gtgtccagtt taccgttcgc cttgcattcg caatgacgat      1140
     taataaagcg catgaccagt cgttggaagt ttgtggatta aatcttgaat cgccgtgttt      1200
     ttcacatggg cagttttacg tgacgtgttc gagagttggt aaaccatctg cactgttcgt      1260
     tttctctccg gacggaaaga caaaaaatat cgttcatcaa caagcgttac aatgaacgca      1320
     acacaaagaa ttccgaaacg tatttgtatt ttagttaatt attttgtttc ataaggactt      1380
     tctatcatta aagtatgatc atgctataat tactttgttt tcaactcata ggctctcaag      1440
     aaggtataaa caagttataa aaagcatttc tattctgctc gctgcgagaa aaacttgcta      1500
     agctgtgctg taaaaatgtg cggttttgtt ttcctttttc cagtcatttt taacatgaaa      1560
     caggaaagtt tttttcttaa atgtataatc acgcctgttc gtacaataaa atcattaaaa      1620
     gtacggccat taaagctact aacctcacag atagagcaac tcgaaaggtt tctctaataa      1680
     cccgtttcca attgatttac ccatccattt tgacttatat taccaatcag ggtcccaata      1740
     acaataaata agatcagaga gaggtggagg aggagattga gattgggaat gaaatggatt      1800
     taaaaagggg ggatgatata gacgcagaga ggaggtggag gatatggata tggtgtggga      1860
     taagagggag tggtgtgaag gtgatggaaa aaagacaggg ggaggaggcg atgtgaaaat      1920
     agaggaggga ggaagggata gacataggga gaagaagagg agagattggg gtatataacc      1980
     catacacatt agctactgcg aagcgttgcc gggtttgcta gt                         2022
//
ID   Helitron-N1_PBa repbase;    DNA;    INV; 1785 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1785
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 608-608 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 1785 BP; 686 A; 268 C; 230 G; 590 T; 11 other;
     tcactataaa attacctttt ttttaaaaaa aggtaaaaaa agggtgtcaa gtatagtgga        60
     tattgccaac tcaaatgatt gtgtaaaatt tatataaaag atttgatatc aataattggc       120
     gccaagttat agtcttacaa acatgaagct acaagtccat tttagtcaaa ttatatattt       180
     caatcgtata aaagatttga taaaccactg ttttaaaaaa ataaaactca agtagtagtt       240
     tctttaattt aaaaataata aaaaccaaat tatatgtata tctttctatc cattaaaaac       300
     ttctttttct aacccaagtg gtagtaatta tttagcttta aaatattttt atatcacaaa       360
     attgctttac tcaatttacg tttttattac aaagaattat aaagtaacag tataaaataa       420
     atgataaaat tttatttaaa taaaaaaaat ttttatgtaa aaacacttgg cgctgcttag       480
     atcaaacgaa aatgcaaaac taatgatgag attatttgaa tgttacaaat aaaggcaaaa       540
     tttattattt aatatgatta aattataatt acacacacac acacacacac acacacacac       600
     acacacacac acacacacac acnnnnnnnn nnntatatat atatatatat atatatatat       660
     atatatatat atatatatat atatatatat atatatatat atatatatat tggaagaaat       720
     aataaactta aataatcatc catgcaatcc gatcaaacaa tgtgtatata tacacacata       780
     tatattgtta ttaaatagtt taagatcaat ataagttgga aattatcaaa tatcaatctt       840
     taaattcttt gtaaattttg caattatata tatatatata tatatatatg tatgtaattg       900
     tctaataata aatagttgat tagaaatatg attcaaaatt ataatatatg tatagttctc       960
     tagatatgtt atttttttaa ttgacaaatt ttcattttta ttcgctttgg aactgatttt      1020
     tctagagtga cataataaga gtatgtagat aagattgaat aaaagaataa tatctttgtt      1080
     ctctgataaa atgaaaaata gaacttacct gcaaagtata gacacaaaca tgagttacac      1140
     tccgaaatta ttacaaattg tcaaactcgc cgcgaacgtc aacatcgttg gccaccactc      1200
     ggacgtgcag aaaaagaata atagtagtat gcaatttatt aatactgcta atgtttcctt      1260
     tttaatttta atatacgcgt atttattatt atattgatac ccgagaggtc taaccaaaaa      1320
     cactaccgtg tttacatcaa tcaattttat cgacccagcg gataaatcag gccgataaat      1380
     cagggtcact gcaggaccca gcgaacattg attcgctaga ttctacaata accctgactt      1440
     atcagtctga taatccgctg ggtcgataag attaataatg acatctcgtg acagacgttg      1500
     cagccgtaca aaggcgacga taatgacgtt tcttaaagta aaaatttcca aatcggactt      1560
     tgtgtagcaa tatctctgct tgtagggcac gtagcagaaa aataaaaata cttttattat      1620
     gcaagtcgga ctcaagctat cgatcaagcc tacttagaac ttgatcagta tagccgttat      1680
     tgagattcga taatttcaga tgctcgaacc tcgacgactc gcgtaaagtc acacggcagt      1740
     gttctcggtt gacttgacac ccgagacact accgtgtctc ctgat                      1785
//
ID   Helitron-N1_PPo repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-174
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2739-2739 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Termini are CA/TC..CTAG/TA.
XX
SQ   Sequence 174 BP; 59 A; 24 C; 32 G; 59 T; 0 other;
     tctatactaa tattataaag aggaaagatt tgtatttttg tatgtattga aataactcaa        60
     aaactactgg gccgatttta aaaattcttt caccgttaga aaggtaattt atctgtgagt       120
     aacataggct atatttttta atttcacgcg ggcgaagtcg cgagcaacag ctag             174
//
ID   Helitron-N1_PXu repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio xuthus: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-196
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2719-2719 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Termini are TA/TC..CTAG/T, ~79%
CC   identical to Helitron-N1D_PPo.
XX
SQ   Sequence 196 BP; 53 A; 33 C; 44 G; 66 T; 0 other;
     tctatactaa tattataaag cggaagagtt tgtttgttta aacgcgctaa tctcaggaac        60
     tactggtccg atttgaaaaa ttcttttttt gttggatagt ccatttatag aggaaggctt       120
     taggctatat aacattacgc tgcgaccaat agtttttttt taattccgcg cggacggagt       180
     cgcgggcgac agctag                                                       196
//
ID   Helitron-N1_RPr repbase;    DNA;    INV; 1006 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1006
RA   Bao W. and Jurka J.;
RT   "Helitron transposons from insects.";
RL   Repbase Reports 15(10), 3419-3419 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 1006 BP; 308 A; 217 C; 200 G; 281 T; 0 other;
     tctatataaa taaaaatgta aatgttcgtt tgttcaaaat cttaaatctc cgaaagttct        60
     tcaccgattg ctttgaaatt ttgacacaac gttgcattcg aatacgggcg tgtttttata       120
     tacctattat atagatgtca cccctgtgac aggtaaaaac atgctttttt taaaaaacac       180
     gccatctgtt ggacgtaaaa gcaacacacg ctatactaaa tattttacga ttccatttca       240
     atgtttccga ttgcattgtt aaattgaatg ttcatagatt tcaatgtgca acaaatagcc       300
     ctgaatccac cggctacaac gttaactgct ttcttcacgt tatgtcaaaa tgacgcgttt       360
     gcgaaaacac tgctgtattc ggaagtgcct acgtattaca catggaatgc gagtagaaaa       420
     tcatttgaac gacgcaaacg aggagagcga gtcgacggac aacctggcat atttaaagaa       480
     actacgatag gcagactgta caccgtgcat cccaatcaag atgaatgctt ctttcttcgc       540
     atgctgttgg taaatgtgcc cggtccaacg tcttccagca attgagaatt gtcaacggcg       600
     ttacccactt tccgcagtgc atgtcaagct ctgaatttat tggagaacga ccgacactgg       660
     gatgtatgca ttaatggacg cgtgcaacac gtcacatcca aatcaaattc gtgcattgtt       720
     tgcaatcata ttgaccgcct gctctccttc atctccaaca gagttatggg agaaatataa       780
     atcgcacatg gctgaagata ttttccgtcg aatacgcaag gaaaattcaa atatgaacat       840
     ggatttcaca gcagaaatct acaacgaagc gttgataatg attgaagatt tgtgcttaga       900
     aatcgcgaac aaagttctca atcaattggg aatgccatca ccgaatcgat ctgctgctgc       960
     ttcgctgcgg actgagccac agcaacgcgt ggccgggtgc agctag                     1006
//
ID   Helitron-N20B_LMi repbase;    DNA;    INV; 1235 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 20.01, Created)
DT   22-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N20B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1235
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 1-1 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1235 BP; 371 A; 262 C; 243 G; 359 T; 0 other;
     tacttataag acgcatttgt tgtctgtctg tctgttctct tataactcaa gatccagaca        60
     accaaataac gtgaaatttg gtacacgtac acaaaattac atggggaagg ttcttaaaca       120
     ggtttcgttc cattttttga aaaccaaccg gaaatttgag aaaaagtgaa agtgcgtttt       180
     caatgtgtcc gtgtaaatct atatcttcgc actgatcttg atgaatttgc acaatttcaa       240
     aacaactgta catcgttcgt gctggtggag ggtacttttc cgatcttgat gaattttgta       300
     cacttacctt gttactgtca ttctaactac aaacatgcgg tcacacattc agggtgattt       360
     gtctgcagga caatttgcaa acaagttgct ccagattgga gatggtaaag ttcctgaaga       420
     tccttcaaca ggcctcatca ttatgccatg tggtcaaatt gtcaactctc ctgacgaact       480
     tctgtccaag gtgtatccta acattcagca aaacttcaag gatcaggact ggctttctca       540
     cagagcaatt ctggcaagca gaaatgatgt ggttgagaag ctgaatgtca ccattcagaa       600
     gcagcttcca gggcaagaat atgcctacaa gtccatagac tgcatcctta atgatgatga       660
     agcagtacaa tatcccattg agtttttgaa ttccatccag actcctgatt tgcaagccca       720
     caacttgatt ctgaaagttg gtgctccagt aatgctgatc agaaatattg atgcacccag       780
     gttgtgcaat ggcacaagat taattgtgaa aaagctgatg caacatgtaa ttcaagccac       840
     agtactcaca gggagtgcta agggtgagga tgtcttcatt ccaagaatac ctatcattcc       900
     ctcagacaac accatacaat tcaagagaat acagttccct ttgaaactgt gctttgccat       960
     gacaatcaac aagtcacagg gccagtctct tgggattgct ggtatagact tgcagacacc      1020
     atgcttctct catggacagt tgtatgtggc ctgctccaga gtgggcaaag acgaaaatct      1080
     ttttgtacat actccaaatg gaactgccaa aaatgttgtt tatcacattg ctttaacata      1140
     aatgtaccct tttattacat gcaaataaac ggttttgtac gcttctacag aaaaccttat      1200
     tttaaacccg ggcaaagccg ggtacttgca gctag                                 1235
//
ID   Helitron-N20_LMi repbase;    DNA;    INV; 655 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-655
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 2-2 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 655 BP; 200 A; 122 C; 120 G; 213 T; 0 other;
     ctctatactt ataagacgca tttgttgtct gtctgtctgt tctcttataa ctcaagatcc        60
     agacaaccaa ataacgtgaa atttggtaca cgtacacaaa attacatggg gaaggttctt       120
     aaacaggttt cgttccattt tttggaaaac caaccggaaa atttgagaaa aagtgaaagt       180
     gcgttttcaa tgtgtccgtg taaatctata tcttcgcact gatcttgatg aaattttgca       240
     caattgacct tcaaaacaag aggaagggca ctgtctacat aaaatttcgt tcagtgcatg       300
     gtggagggta cttatggatt tcgccaaaat ccacagtttt gctccgatct tgatgaaatt       360
     ttgtacactt gaccttgaaa acaagatgaa ggttactgtc tacataaaat ttcgttcggt       420
     gcatggggga gagtacttta cttacagact tcgattgcaa tctctataca tataagacgc       480
     atttgttgtc tgtttgcaaa ttttttgtac atactccaaa tgactgccaa aaatgttgtt       540
     tatcacattg ctttaacata aatgtaccct tttattacat gcaaataaac ggttttgtac       600
     gcttctacag aaaaccttat tttaaacccg ggcaaagccg ggtacttgca gctag            655
//
ID   Helitron-N21_LMi repbase;    DNA;    INV; 1139 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1139
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 3-3 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1139 BP; 365 A; 206 C; 202 G; 366 T; 0 other;
     tcattatata aatacgctaa cacgaaactg agggtacaga tttttaatat taatcataca        60
     agaaggccaa tgaaacgtac ataattcgaa aggtggtttg tcatagatgt tgcgaatata       120
     aaaattgtgt gtgcacgtag ccgttaagag tggtaaaaag aaaaagaaat tttaggatga       180
     tactccaaat tctccataag ttttgcacta tattataacc cgttgtaggt ggcatattgg       240
     tacaggtaaa attagctcag tcagttagcg cttggagttc caatcttaag tcccgggttc       300
     gattcccact gccccccttt tttttaattc ttcgtaatgt tcaattctta acttttaaat       360
     atagttttta aatataatta aacaattcag tttatgaacg cagtattaat atattcagat       420
     tcattacaat aatttcaatt aatgtgttta aagagcaatt gttttaaata atacatttca       480
     agtgtctccg ttgattttcc ataagaacat agttttattg aaaaatggta acccaacaag       540
     gattttctaa tagtgaagtg agtgttggaa acatcgcaag tacaaatttg aatgaagact       600
     taaccctcga gcgggcgtgc tggggtactg agtaccccat aggccatagg ggaatttcgt       660
     agtgcgcagc atagcaatgt tactgcaaaa tataaatatt tacctggttc gtaagggaat       720
     tgtaatttac gatagaaggt ggtgtattga gtaccccacg cgccttctcg tgaaaggaaa       780
     taaaaatgta aacaatcgac gcgcccgctc aagcataaaa aagcatcacc agtgctctgc       840
     attatgcttt ttcaatttat aaagacaaag gacatgatca gcgataatcc tgcgcctatg       900
     tgccctgtac caatgatgaa aggctttaca aaagttgttt ttactgaagt tttgtaatgg       960
     ggcccccgtc tttcattctc tcgtttcctc tctgcccttt ctttcacctg ttctcatagc      1020
     attcacataa aacctataaa tttgcagtgc tcaataaatt ccaattacat taaaattttt      1080
     ttcattttca tgactttgca aacacaactg gtcgaatttc gaccacaggc aatactagt       1139
//
ID   Helitron-N22_LMi repbase;    DNA;    INV; 1166 BP.
XX
AC   .
XX
DT   23-JUL-2014 (Rel. 20.01, Created)
DT   23-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1166
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 26-26 (2015).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus. Termini are uncertain.
XX
SQ   Sequence 1166 BP; 370 A; 158 C; 353 G; 285 T; 0 other;
     tctatataaa aatcattgcc gcatgtatgt aagagcatca cttgagaacg gctcgaccga        60
     tttggctgac ctttttttgt gttcgtaatt ctcaggacaa ggtttgtatg aaagaaattt       120
     tggaaaatct accggaaaat tggaaaattt gagaaactga gtttttcaat gtgtttttga       180
     atgaactcaa cactacaact cacgattcgg acgatggaga ggggtaattc ttttttgttt       240
     tgttcgttat ggtcctggaa aagttttcag aaaaaaaatc gggacagtta caaaggaaag       300
     tcggaaaatt cgaacaaagt gcaaaaatca taatttttgt atgcactctc tatcatagct       360
     gacgatagga acgacatatt tggtttgacc gatcaccatc aaatttggca catttctgta       420
     ttttttcacc gaggaggttt ttatgctccg caacccaccg tatggtgcat ggcggagggt       480
     accttgcaat agacttcgac gccatttgac cgatcaatag atttcatcac cgttttaccg       540
     atcaccatga aacttggcac atgtatgtat gttttcatgg agaagttttt taccctctgc       600
     aagccgctgt atggtgcatg gcggagggta acttgcaata ggcttcgaca ccgtttgatc       660
     actcaccatg aaagttggca ggtatatgta atttttcata gatagcgggg aggaggagat       720
     ggagaggggc aggaggagat gtagagagaa agggagagga gcagagagga ggatggagga       780
     gatggactaa tggaagattc gaataaatac ataatgtagg aaatgttact gtgaattaca       840
     cgtaccattg tttatatcag aaggagggga gaaggagaag gagaggagga ggagacgaag       900
     gcggaggtag acagaggggg ggaggaggag atggacggag aggcatgaaa tatgaagaaa       960
     ggagggagga tataaacacg gagaggagga gatggatagt gtgggataag agatgtacag      1020
     ggagtgggtg aaggtgatgg acagagatag ggggaggaga tggacaaagg gggaggagag      1080
     gtagagaggg gaggaggaga gggatagaga gggggaggag aaggagataa gtgtatatcc      1140
     aattcccata catattagca attgcg                                           1166
//
ID   Helitron-N23_LMi repbase;    DNA;    INV; 1374 BP.
XX
AC   .
XX
DT   23-JUL-2014 (Rel. 20.01, Created)
DT   23-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1374
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 4-4 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1374 BP; 431 A; 265 C; 292 G; 386 T; 0 other;
     tcttatacat aaaaatgaat gtttgtctgt atgtcctcta tgtgttcata aaccattcat        60
     tcgattgcaa tgaaactttg gtgaactgtt caccgtacgc ccacgaaggt tcctgaccca       120
     aaaacaaaag agcacgacac atagctcagg agatatgacg tcataaataa tgagaggcca       180
     ccgcgtgaga atacccagat ttatgcgtca attattggaa aatgggagta gttagggacc       240
     tgcaacaaag tttgcatgta atttcggacg tttatgaagc gttttgtaac tgaccccccc       300
     ccccccacaa aatgatgaaa cgaaagaagt ctaccgctca caacagtttc gctgtagatg       360
     ccgtaaaact gtcgcatcag gcatgacctt gtatcaaata aagttagcat tacagatttg       420
     catgttacta tttatttttg tctgcaagtc tcccttaatt ctcttgcatc caaaattaag       480
     caatctgttt tcttaatctc tatctatata aaagcgaaag gacactcact cactcactga       540
     ctaaacacga aatctcgaaa actacttcac ctatgaagct gaaatttggc aggaatgtag       600
     tttataggta gaaaacgtca gctaagaaag tattttgtga taggtgcatg gcggagcata       660
     cttctcctac agactcacga aatctacagt ttcattccga tcttcacgaa atttcgcacg       720
     cttgaccttc aaaacaagag gaaggtcacc gtctacctta agtttcatac ggtgcatggg       780
     ggagggtact ttgcaacata aaaatggatc cctaaatacc ttggtcgcgc cataacttga       840
     gaacggctcg accgatttca cagatccttt ttttttttgt tgttttcgtt attctcagaa       900
     caagggttgt atgaaataaa actggaatat ttgagaacaa caaagtgcgt ttttcaatgt       960
     gaccctgcgt ttctattgca tagaaatcta tagttttgtt ccgatattga tgaaattttg      1020
     cacactctac cttaaaaaca agaggaatgt cactgtctgt ataaaatttc gttcggtgca      1080
     tggtggaggg tacttaactt acggaatttt acaaaatgca tagttttgct ccaatcttta      1140
     tgaatttttg cacacatgac ctttaaacca agaggaagat cactgggtac ataaatgttt      1200
     gtatggtaca tgacagaggg taccttgcag aaaactttgc cgagagaggg aaaggtggaa      1260
     acgaacagag agatgggaga gaaagaggtg gatgcagaga gaggggggaa ggggatgtgg      1320
     actacgagag tgtaggataa ataaacaccc gggcaacgcc gggtttacag ctag            1374
//
ID   Helitron-N24_LMi repbase;    DNA;    INV; 1122 BP.
XX
AC   .
XX
DT   24-JUL-2014 (Rel. 20.01, Created)
DT   24-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1122
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 5-5 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1122 BP; 376 A; 165 C; 251 G; 330 T; 0 other;
     tcttaatata tataaaaatt gaggtgtttg tgcctatatt tcactctgca gccaaaacta        60
     cacatcgcaa acgaatagtg tttgtatgtg gtagtaggta tcagtctccc attgtgcact       120
     atggtggtag agggttgata acgataaggg ggtggaagat atgggagttg aaagttaccg       180
     acttatataa aattctacgt gtgggtgtca atattttgct cttcagcaaa aactacacaa       240
     tggagacgaa cgatctctct gtgttgttgt agtacaaagt ctcccgttgt acaccatagc       300
     agttccgtgt cgatagctat aagagggtgg aagatatagt ggttgaaagt cgtcagctta       360
     tataaaattc ggactgaaga ccagcgatga cttttgacac tataatagca aagaggttat       420
     atacagcgaa acgtgatgca cattcttcag ttgtttttct gcaacaagcg tacgaataaa       480
     gaaaaataag tgcatattgc agtttgaaaa gtaaaactac caagaaagat gccaaagcgt       540
     aagaaagaaa tttcgcgttc tcgatccgtt tctaaaagac agaaaacggc gctgaaaagt       600
     gaatctacag acgatagaaa cttgaaattt gtagacgttg tttatcttac actgtaggca       660
     tcagcgattt ttcgatattc ccatccctaa gggggtgaaa taggggatga acggtttttt       720
     gaaaatacgt tgctattaag gcaattttga agcaagaaat acaaaacttc ggatttagat       780
     ttttgattgg aattttaaaa acacgtgttt cgatattttt ggaaattcaa ccattaagcg       840
     ggtgaaataa gggaaaatct tttaagggtg ctactaagac tattttgatg ctagaaatgc       900
     gaaaatttgg atttggaacc atggttagaa tttaaaaaaa tgtgtttcgg gatgttttga       960
     attctgccat caatggtgca atagggggtg gcaagttgta tcaaaatact tgattaggaa      1020
     agcattttta aagctaaatc tatgaaaatt tatatttaga agtagaaaca accaatgcag      1080
     accatccagt ctacgcgtgc gaagcagcgg gaattaagct ag                         1122
//
ID   Helitron-N26_LMi repbase;    DNA;    INV; 1182 BP.
XX
AC   .
XX
DT   25-JUL-2014 (Rel. 20.01, Created)
DT   25-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1182
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 6-6 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1182 BP; 362 A; 221 C; 247 G; 352 T; 0 other;
     tcattatata aatacgctaa cacgaaaatt gtggtacaga ttactaattt attcgtacaa        60
     gaaggccaat gaaagttaca taattcgaaa gattgtttgt cgtagatttc acgaatataa       120
     atattatgtg tgcatttagc cattaaaagt ggtaaaagga agtagaaatt ttcctatcta       180
     cagcttggat caagttctac attctccaac aatcagctca ctgattggct attcgcctcg       240
     accaaagacg ctgtaatgca gcgcatctgc agtattaaaa taacgcatta aaataagtga       300
     atatcgaaac atggagtgct cccaactcac tttcttgtgc cgttcaaatg cttcattttc       360
     gcagtgatta agagtggtta aaggaaatgg atgttttcat atgaatgccg atataaagga       420
     tgatgcgccg ggagaggcat ctagcggtgc tcgggtggaa ctacgaagtc gagaatgccg       480
     atataaatga tgatgcgccg ggagaggcat gtagcggtgc acgggtggaa ctacgaagtc       540
     gacatgttgt cagctctgga attctgaata tcgcagtatc gaaataacat tatttcttgg       600
     cgttgtataa atatacgaac accgaaattg tagttccatt tcaaatatta ggctaatgaa       660
     agttatataa ttcgaaaatg gcatgagaag tatatacttc cgtttttatt tgttgttatt       720
     gtgtcaggca ttttccttaa cacgtaaaag ataccgtttc atacctccca gtgccggtta       780
     aattttacca aatatcccag cggcctccta tgataatgtt ggcaacagat gctgaatagt       840
     gagaatcctg tgagtcttca ttttagccat cgcttgacaa cgctgatgtt ttctcatgga       900
     atcttcgctt tacgagggca attattttta ctgagcggac gagggtacat acaagaacct       960
     gtcaaccata aagcaggaac agcattattt gtttacttca tggtctgtac gatacactaa      1020
     tcgagtcatt ctatgtggtt cgaacaaatg ggcaaagatt ttctatcgtg ttgttgatgt      1080
     tgccaacata atcacgcggg ccgccgacat gatacgtaaa attttacccc cagtgaccac      1140
     tgtaaacaca attggtcgat tttcgaccac aggcaatact ag                         1182
//
ID   Helitron-N2B1_HMM repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   08-MAR-2013 (Rel. 19.10, Created)
DT   08-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N2_HMM;
KW   Helitron-N2B_HMM; Helitron-N2B1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-479
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2639-2639 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. The 5' end is uncertain. The 3'
CC   terminus is CTAG/TA. It is an internally deleted derivative of
CC   Helitron-N2B_HMM.
XX
SQ   Sequence 479 BP; 144 A; 81 C; 83 G; 171 T; 0 other;
     atctatacta atataataaa gcggaagagt ttgtttgttt gtttgtttgt ttgtttgaac        60
     gctaagatct ctggatctac tggtccgatt tactttgttt ttgttttgta tgaaagctgc       120
     attcttcaga agtgctatag gctatataac attacattac acatataaac taatatattt       180
     taaagtactt tctaatttga catgcaattt attctgccat gttaataaca accgtcgcgt       240
     cgctacgcaa ccgttaccgc gacattttga tattcatcct tatgaaaata aatataatag       300
     tcacttttag cattttatct agattgaaat tatagtttac tgtataacat tctaataaat       360
     aattaaggag atgtcactga ttcgaaatga cctagccttc gggcggcata gtatgagtat       420
     gaccgacgcg aaaatattct tatagttcaa gcaggcgtag ccgcgtccgg gtccactag        479
//
ID   Helitron-N2_AAe repbase;    DNA;    INV; 2136 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 26.01, Created)
DT   09-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Helitron family from Aedes aegypti, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2136
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2136
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 132-132 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to the consensus.
XX
SQ   Sequence 2136 BP; 621 A; 477 C; 434 G; 604 T; 0 other;
     tttgacgtta actacgtctt acggcaatat actgggtgtc aattgaaaat ctaaaatttt        60
     gcgaccgtca cgaaattatg taagattttg aacgctaata actcagtcat ttatcgatag       120
     attttaaaaa ttttcccacc aatcggtcgg aaatgtatac agcaatttcc tcgaatggag       180
     aaaactattg aatatcgaca ataaactatt gaaaatttgg aaaatgtcga cccctttctt       240
     acgcaaccaa tcacgtgcaa gcagttttcc acgcttcttt tgcgttccgc ttcgcactat       300
     aaaagcagac cgattcctgc ttcttcgctc attcttcttt ttgccgtcag actgtgaaca       360
     tggtcggcga gcaagtctcg agtgcctttc gcattctcag ctcagttttc aatggaacgc       420
     gaatggaaca acaacacgcc gccgcgactg aagccgcttg ttgaagcgcc catcgtcatc       480
     gccaccgcaa acctcatcgg gcgaggagga tttctaccag tgcgccgtca gcatctggct       540
     gccagaggca agctcttgat catcaagcgg cggcaaaata ccagcgtccg gattgtgaaa       600
     tcgctcaaga tttccaaatg tgctcgcgct tccagagttg gcgctgcagg aatcggggcg       660
     caaaggtaag tttgtacgag gtggctgaag aaaatcgacc aaagccgctt gttgaagcgc       720
     acatcgtcat cagcaccgaa aatctcaccg ggcgaggagg attgcaacca gtgcgccgtc       780
     aaaatgtgtc cgtgttacgc aaattcaaca attcaatcgg cacttttcag agccaacaaa       840
     tgtgttttaa agagttgatt gtgtaatatt ctttaatttg ttcgagatgg ctgaagaaaa       900
     tcgaccaaag ccgccaaaat gtgtccgtgt tacgcaaatt caacaattca atcggccctt       960
     tccggagcca acaaatgtgt tttaaagagt taattgtgta atattcccta atgtgtttac      1020
     cacatacttg ctataatttc ttaattcatc tcatagcagc atacaataat tgatttatta      1080
     cgaataattg acaatacggc aatttgagga tgtttccgag gacgctgctg cagtgccgtc      1140
     gggatgcaat aacagcataa tgctaatctt gtacatccct tacccagaca tcagtttcat      1200
     atagcctatt tcccagataa gaaaacgaag aatttgaaag gaggagcatc acctgctatt      1260
     ctaagggtat aaagcatccc ttcttcgttg aattcggttt cattctgttt tcgctttcga      1320
     gctggtaaga gctcctccaa acctgctcag ctcctcgcta ccagaggcaa gctgtttgta      1380
     cgagatggct gaagaaaatc gaccaaagcc gcttgttgaa gcgcacatcg tcatccgcac      1440
     cgcaaatctc atcgggcgag gaggattgca accagtgcgc cgtcaaagtg tgtccgtgtt      1500
     acgcaaattc aacaattcaa tcggcccttt tcagagccaa caaatgtgtt ttaaagagtt      1560
     gattgtgtaa tattcctaat ttgttcgaga tggctgaaga aaatcgacca aagccgcttg      1620
     ttgaagcgca catcgtcatc gcaccgaaat ctcatcgggc gaggaggatt gcaaccagtg      1680
     cgccgtcaaa atgtgtccgt gttacgcaaa ttcaacaatt caatcggccc tttccagagc      1740
     caacaaatgt gttttaaaga gttaattgtg taatattccc taatgtgttt accacatact      1800
     tgctataatt tcttaattca tctcatagca gcatacaaca attgatttat tacgaataat      1860
     tgacaatacg gcaatttgag gatgtttccg aggacgctgc tgctgtgccg ttgggatgca      1920
     atatattttc tattgttaag gaatgattca aatattacgt aacgcaaaat tttattttaa      1980
     acatatatct tttctaaatt cacaaaccat tacattctgg attataacta aaggaaggtt      2040
     gcaattatga catttgacta taatacaaat gcagcaaatt aaatggcgta gttaacgtca      2100
     tgcggtcgtg tcttgtacac aacccccact gatttt                                2136
//
ID   Helitron-N2_BTa repbase;    DNA;    INV; 821 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-821
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 635-635 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 821 BP; 247 A; 153 C; 188 G; 233 T; 0 other;
     tctatattat acagctacaa gcaaaatctt ggaagcacta tttctgacga actgccggac        60
     cgataaggat gatctttaca tgtatgtcat ctgtagtaga tgtagatgtg caaaaaatta       120
     tgaaaccccg aacttttaat gttgtagagc ttttaaagct catgtcactt aagtccaatg       180
     ttaatagcgt gagagatatg tcgtttccgc tagaaacgtc aaggtgtggg attctacctg       240
     agtgactcga ataaacaata aaacaatgga aaagctcgtg aagggctcct cattcgaaga       300
     gttgaggaac ggtgcatcgc tcagggttca aggttcaagg tccaaggtat aaggtttaac       360
     tcaatttttc ctgcattctt ccggcttcga tttgtggcat tggtcaattt acttgattgc       420
     tgaatttcta ttaatattta cagcagataa acagcagata caaagtgaga aggcaggcgc       480
     tgcgtcgcgt cgggacggac caaatattat taactcttaa cggtcgaaat ccgatttttt       540
     tttttaaaat taagtattta aaaataacat aataaatgga aatttctcca gtaagtggac       600
     tgtgaaatta tgtacatcca gctattcctc atcatttaca aatctgagtg ttacgtcaaa       660
     aattttgaaa tcgatgcagc tcgaacacaa aatggtgtat taaaatggaa gaacattttt       720
     gcctatacat atgcgtatag ggcccgcgaa gcgggcctga gggcgcgagg cgccctcccg       780
     ggggttgggc cgcgtagcgg tcagggggca gggcccccta g                           821
//
ID   Helitron-N2_DBi repbase;    DNA;    INV; 962 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Helitron DNA transposon from the Drosophila biarmipes genome.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-962
RA   Kojima K.K. and Jurka J.;
RT   "Helitron DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 809-809 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 962 BP; 317 A; 150 C; 154 G; 341 T; 0 other;
     ttataccctt gcagagggta taatgatttc agtcagaagt ttgcaacgca gtgaaggaga        60
     cgtttccgac cccataaagt atatatattc ttgatcagcg tcacaagacg agtcgatcta       120
     gccatgtccg tctgtccgtc cgtctgtccg tccgtttcta cgcaaactag tctctcagtt       180
     ttaaagctat cgggctgaaa ctttcccaaa agtcttcttt ctattgcagg tagtatataa       240
     gtcggaacca gccggatcgg acaactatat cttatagctc ccataggaac tatcggggaa       300
     aaaatttaaa aaaaattata tctttcgtgt tttttaacat atacctttct aagcttggat       360
     ataacatttt taaattagtt ctgaatttcg aattaaattt tatcaaaatc ggacgactat       420
     atcatatagc tcccatagga acaatcggaa aattagtggt aaaataatat tgaaaaatta       480
     tatcttcggt gttttttaac ttataacctc ctacgcttgg aaataacatt ttttatttgg       540
     ttttgaattt cgaattaaat tttatcaaaa tcggacgact atatcatata gctgccatag       600
     gaacgatcgg aaaattagta ggaaaacatg aaataaaaat tatatctttc gtgtttttta       660
     acatataacc ttatgagctt gaaaataaca ttttttaatt agttctgaat ttcgaattaa       720
     attttattaa aatcggacga ctatatcata tagctgtcat aggaacgatc ggataattgg       780
     tgggaaataa tgtgaaacaa attatagctt tggggctttt tgacatatta tcttataata       840
     ttgggaatat aaatttttat atttttaaga atttcgaatt caatttaata aaattattga       900
     ttatttttta taactgcaag ggtatacaaa cttcggcttg ccgaagttaa cttcctttct       960
     tg                                                                      962
//
ID   Helitron-N2_DBp repbase;    DNA;    INV; 1870 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Helitron transposon from the Drosophila bipectinata genome.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1870
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 623-623 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. The consensus is ~95% identical to
CC   that of Helitron-1_DAna.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1870 BP; 641 A; 330 C; 363 G; 536 T; 0 other;
     tctatatata taaaagaaca acgtgtttta tgttacaaca cttataaatc aagaacggaa        60
     gaacagattt gagtgaaaat tggtagggag gtagcttaga gccaggagaa ggacatagga       120
     tactttttgt cccgttcgac agcgttcctc cctggcccat acttttttat ttaggcagac       180
     agctaagaag aaaatgtcaa atgtcaaaat gtcagttaca aacgaagtca aattcatagt       240
     caggctctca aatttaacaa cgaaccaaaa agattgtgtt gcgcttccgg gaaagtgaaa       300
     ttgcctcaac ttgaagcacc actagagcct ctgcactctc tattgatatt tgtaagaaat       360
     caatattaaa actatttcta ttaaataaat aattaacaag tggattgaag tgaagtgaag       420
     tttaattaat aatgccgcga ccaagacgat cgaatctttc ccgacaaagc cgtaatgcaa       480
     gaagaataca aaatactgca tatgaaagga ctgaagaaga acgagaaatt gcacgtgaac       540
     agagccgcaa tagtaaggct cgacttcgtg cttctcaaat agattttaat ttgcgacgaa       600
     aaattttagc tgatttgaat cgagctgcgt ttcgatacga ttgcagcaat gattacagct       660
     tgcatcctag cgtttgcatt gggcaaatgg acgttgtttg cgagtattgt ggtgcattaa       720
     agttttccgg agaaacgcct ggattatgct gcgttaatga taaagtgaag ttgccagtaa       780
     ttccaagatc tgcggctgcc gacgaaataa acgcttgcct caaatcgtca aatctatggc       840
     gctatgtgaa gaaactgcag ctgataacaa acatgagagt tacattgctt aatgatacat       900
     ctgctgaaga tttctcggag caatttctga ctatcggtaa tggtcaagta cctgtcgatg       960
     aatcgagcgg attaatatca tttccaaata atttttgtaa ttttgtctca tcaaaagacg      1020
     aacttatcaa caatgtattt ccaaatatta tttctaacta caaaaataat gaatggttga      1080
     gtgagcgagc aattttagcg gctaagaata aagatgtaga tgacctgaac tacataattc      1140
     aaaataagat cattggaaca atgcattcat tcaaatctat tgactgcgtc acaaatgaag      1200
     atgaagccac caactatcca attgaatttt taaactcttt ggacgtgcct ggcttaccac      1260
     cgcacaattt acgcctaaag gttggctccg tagtaatcat gcttcgaaac ataaaccaac      1320
     caaaactgtg caacggtacg cgtttggtgg ttagtaaatt gatgaacaat gtaatttacg      1380
     ctacgataat gataggaaaa ttcaaaggtg aggaagttct aattccgagg atcccgatga      1440
     tcccaaccga tatgccgttt gaatttaaaa gacttcaatt tccgatacgt cttgcatttg      1500
     ccatgacaat caacaaatca caagcccaat ccttaaaagt ttgtggttta aatctagaac      1560
     attcatgttt ttcccatggt caattatacg tggcatgttc acgggtcgga aaaccatctg      1620
     cgttgtttgt ttttgcgcct gataataaaa aaaaaaatgt cgtgtatcac aaggtgcttg      1680
     agtgaagagc aacctatata ctaaaataca gaaataataa tgaatgatta aggaggagaa      1740
     acaaagaata ttgtataccc acaagtatta cagaatttaa ttaatttgaa aattattctt      1800
     ttttgtttga cttatttttt atgcgtgcaa caacaatatg ccacagcgaa acgtggcagg      1860
     gtactgctag                                                             1870
//
ID   Helitron-N2_DEl repbase;    DNA;    INV; 594 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-594
RA   Kojima K.K. and Jurka J.;
RT   "Helitrons from Drosophila elegans.";
RL   Repbase Reports 12(4), 432-432 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to consensus. Fragment. It shows similarity to
CC   Helitron elements from Drosophila.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 594 BP; 149 A; 120 C; 158 G; 167 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atattgtatt cgttgaaaag tatgtaacag        60
     gtagaaggaa gcgtttccga ccatataaag tatatatatt cttgatcagg atcaatagcc       120
     gagtcgatct agccatgtcc gtctgtccgt ctgaccgtct gcatgcagat tctagtagtt       180
     cctaagcagc gcaagtttat ttcaaaacgg agccacgccc actctaacgc ccacaaatcg       240
     tgaaagtatg tactgtcact ctgagacatg taaggttggg gtggttgatt gctgtgtgtg       300
     cgtttcggtc atatctatcg gtagacccaa aaattttcaa aatcgagcta ttattttaga       360
     agttatgggg cttatgaagt tctctgccgc cgctctgccg ctgctcagcc actgatcggc       420
     cgctgttctg ccggtgctag cagactgaga gggcaagaga gagagagaac gagagaactg       480
     ttagcggggg gtgggggtgc tgcacgctct tagcttctag tgttggctat gcagttcgac       540
     agatggcgcc acctaaactt tgattgtttt gtaggggaaa tacttaggtt gaag             594
//
ID   Helitron-N2_DMo repbase;    DNA;    INV; 2976 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-2976
RA   Bao W.;
RT   "DNA transposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2848-2848 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 2976 BP; 935 A; 541 C; 590 G; 910 T; 0 other;
     tctatatata taaaagaaag ttgtgtaaaa gtgaagactg cttataactt gatttgggct        60
     gaaccaattt tcatggtttt tgatttgttg gatttgtctc cgcaacgagt ttagtatagg       120
     gtcttaaaaa tactgaaaaa atttgccgaa tacttgaaaa acgcggtttt ttccccaaat       180
     gttcaaattt tttttatacc cagtaggctt ggtaacagtg acagttttga caatagtgta       240
     gaagtaaata aacaaatgta gtcagtcagt ctacggcaca gcctcaggcg aacctgacta       300
     ttcataaaaa agcacatttg ttaaaaaaaa aaattttgaa aaacaatacg catacggaca       360
     aaagcaaaat atctcgaaag ttcaggtagg tattgttgaa tttgtttttc tcagacatta       420
     tttttgtaaa taatttatat ttgtatttct cgacattatt tttgtaaata atttttattt       480
     atatttctcg atttctcgat attttatgtg gttttgtgcg attgtgcata ttcagtatta       540
     ctattaatga aaatgccgcg tcctagaaga tctaatcttt cccagcggac ccataatgca       600
     attaggctac ggaataccgc gagtcaatta tctgacgaag aacgagaaag gcgccgcgtt       660
     agtacccagc aaagaagggc cttaattcgt gcttctcaaa gagaggcagc ccgtgaaacg       720
     gcaataagaa atggttcaag gattgatttg aatcgagcag cgtttcgata tgattgtacc       780
     attgactaca gcttgaatcg tttagtttgc attggtccaa tggacgttgt ttgccagcat       840
     tgtggcgcat tgaagtttgc tggtgaaacg cccggtttgt gctgccttag tggtaaagtg       900
     acattgccat tagtggtctc gccaccagag ccattgcgtt ccctgcttta tggcgaaaca       960
     ctagaatcac gacattttct agcgaacact caaaaataca atgcctgttt ccaaatgact      1020
     tcatttgggg cggaaattat tgaagaacac ggatataatc cgacatttaa ggtaatttac      1080
     gttaaaaatt ttattttctt atttgggata atgtagttgg ttagatttct gtaaaaagtg      1140
     tttgtaaatc taactataac tatggctttg aatgtaaaga ttcaaggcca gatttgccat      1200
     cgcattggat cattgcaacc tattgaagat gaacagcaca aattcttgca aatatacttc      1260
     atgggcaata tggaagagca acttgatcgg cgccaagaaa tcaacactgc gatgaaaaga      1320
     gcaattctcc aagatttgca gcaaatgctt catgaacatc atgcattggt caagttgttc      1380
     aagaccgctt tagagcgcat gccaagagat gactataaaa tagtaatcag agcagataaa      1440
     agaccagctg gaacacatga acgcacattt aatgctccaa caatcgatga agtggcaatc      1500
     ctgattgttg gtgaaagctt ggaagcacgc gatattgtgc ttacacgacg cagtgctgcg      1560
     caactacaaa gaatatctga aacgcaccgt tcatatgacg ctttacaata cccgctgatg      1620
     ttttggcaag gagacgatgg atatcacttt aatatcaaaa tgataaatcc attgaatggt      1680
     aagatcaatc attgttttca ttttaacttt atatatacat tttattctgt ttgcttttgg      1740
     tacacaaaaa aagttatcac tcttaattta gtagagagta gctgtaagag tcgtaaacct      1800
     attaggggct ctaaaataca atttttactg catttgtttc aggtgaggaa actggcaaga      1860
     aggttagttc tatgaattat tacgcatatc gtttgatgat tcgtgaaaat tctgacaatt      1920
     atttgttgcg atttcgtcga ctgtttcaac aatactgcgt tgacatgtac gtgaaaatcg      1980
     aaacggagcg cctgactttc atccgtttga atcaagctaa attgcgttcg gaagagtata      2040
     ttcatttacg cgatgcaata attacagacg gagattctga aaatgttggt cgattgacta      2100
     ttttaccagc gacatacaca ggtagcccgc gtcatatgca tgaatatgcg caagatgcaa      2160
     tgacatatgt tcgtcattat ggtcggccag atctattcat tacatttaca tgtaacccga      2220
     aatggatcga aattattcaa ttgctgcttc ccggacaaac atcaagtgat cgacacgaca      2280
     tcaccgcacg ggttttcagg caaaaaattc ggtcactaat aaattacatt gttaagcaac      2340
     acgtctttgg gattactcgt gctggtgtgc aaacgaagat gaagccacta attatccaac      2400
     tgaatttttg aactccttgg atgtgcctgg tttaccaccg cacaatttac aactgaaggt      2460
     tggctcggta gttatcatgc ttagaaattt aaaccaacca aaactgtgca atggaacgcg      2520
     tttagtaata agaaaactgt tgagcaatgt tattcacgcg tcgatactca aaggaaaatt      2580
     taaagatgag gaagttctta ttccaaggat tccgatgatc ccaacagata tgccctttga      2640
     gtttaaacga attcaattcc cgattcgtct tgccttcgcc atgacgatca acaaatcaca      2700
     gggccaatct ttgactattt gtggcctcaa tctagaaaat gcgtgttttt ctcatggtca      2760
     attgtacgtg gcatgctcac gtgttggcaa accatccgca ttatttgttc ttgcacctga      2820
     ccaaaaaacg aagaatgtcg tttaccacaa ggtgcttgaa tgaaaatctg attaataaat      2880
     taattagagt gtatcccaac ctgaacaaca taccttttaa tcatttttta cctagaaata      2940
     agggtagggc aatgcaacgc ttgctgggac tgctag                                2976
//
ID   Helitron-N2_DSer repbase;    DNA;    INV; 2618 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2618
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1842-1842 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. The termini are TA|TC..CTAG|TA.
XX
FH   Key           Location/Qualifiers
FT   CDS           224..940
FT                 /product="Helitron-N2_DSer_1p"
FT                 /note="helicase."
FT                 /translation="IKAFPVKHSKHIERRNLIDSVYPDIENLHERDVHWLC
FT                 SRAIVSPKNDTVNEINNLIVQKVPGQTKTYKSIDTVTNIEDAVHYPQEFLN
FT                 SLNPSGLPPHELTLKIGIPIMLLRNLNPPSMCNGRRLLIKELKDNLIVATI
FT                 ITGPASGQLAHIPRIPMIPTHLSIPFKRLQFPVKTSFALIINKSQGQTFEL
FT                 VGIDLRNKCFTHGQLYVGLSRVGAPENQFILLPQNKTTSNIVYREALTK"
FT   CDS           1000..2508
FT                 /product="Helitron-N2_DSer_2p"
FT                 /note="helicase."
FT                 /translation="RMNLCHIIIIIMNVLKLTNLNVMFNARAKPGRAVNRT
FT                 LQDLRNSSAVMGGITFVFAYDTLIEAVNSGSGGIYFLDAPGGTGKTFLISL
FT                 LLARIRSRNDVALALASSGIAATLLEGGRTAHSALKLPLNMQITETPICNI
FT                 AKNSAMAKILQVCKLIVWDECTMAHKRSLEALDRTLKDLRDNQNIFGGAMI
FT                 LLSGDFRQTLPVIPRSTVAVELNACLKSSNLWQYVKTLHLTTNMRVFLQQD
FT                 ETAYVFAKQLLDIGNNKVAVDTSTGFITLPTDFCHITDSKVELIQRVFPDI
FT                 AQKFNNHNWLGERAILAAKNKDVEDLNATIQNFLPGQLVSFKSVDTVMNQD
FT                 DVVNYPTEFLNSLELPGLPPHNLQLKVGSVVIMLRNINQPRLCNGTRLAVK
FT                 RLMNNVIEATIIKGKYKGEDVLIPRIPMIPTDLPFDFKRLQFPVRLAFAMT
FT                 INKSQGQSLEVCGINLEFPCFAHGQLYVACSRVGKPSSLFIYAPQNKTKNI
FT                 VYEKALN"
XX
SQ   Sequence 2618 BP; 851 A; 504 C; 518 G; 745 T; 0 other;
     tcttctatat atataaaaat atacagctgt tcgttagtct cgctaaaact cgagaatggc        60
     tgaacggatt tatcttatct tggtcttgaa ttattcgtgg aggtctaggg aaggtttaaa       120
     aggtgagaaa aattcgatta attgccggga aaatcctcaa aacagtattt ttctatttcc       180
     catacaaacg ttttctaaat aaaatgtaca ggcagacagc tgaatcaaag catttcctgt       240
     caaacattca aaacatattg aaagaagaaa tttaatagat tctgtatacc ctgatatcga       300
     gaatttgcac gaaagagacg tccattggct gtgttctcgg gctatagtat cacctaagaa       360
     tgatactgtc aatgaaataa ataatctgat tgttcaaaaa gtccccggcc aaacaaaaac       420
     atacaaatcg atcgacactg taacgaatat tgaagatgca gtccattatc cacaggaatt       480
     tttaaattcg ttgaaccctt ctggactgcc accccatgaa ttgacgttaa aaatcggaat       540
     cccaatcatg cttttaagaa atttaaaccc tccaagcatg tgtaatggga ggaggctgct       600
     tattaaggag ttaaaggaca atttaattgt agcaactatt atcactggcc cagcaagtgg       660
     tcaactagct catataccga ggataccgat gatcccaact catctgtcaa tcccatttaa       720
     acggcttcaa tttccggtaa aaacatcttt cgcattaata attaacaagt cccaaggcca       780
     aaccttcgaa ttagtaggga tcgatctgcg aaataaatgt tttactcatg gtcaactgta       840
     tgttggtcta tcgcgagtcg gagcccctga aaatcaattt attttgctgc cacaaaataa       900
     aacaacatca aatattgttt acagagaagc tctaacaaaa taaatgtatt ttcttttagg       960
     gttatgacct caataattga aaaaataaaa taataataaa ggatgaattt gtgtcatatt      1020
     attattatta ttatgaatgt gttaaaattg acaaatctaa atgtaatgtt taatgcccgt      1080
     gcgaagccgg gacgggccgt gaacagaacc ttacaggatc taaggaactc ctctgcagtc      1140
     atgggcggga ttacttttgt atttgcgtac gacactttga tagaagctgt gaacagtgga      1200
     tctggtggaa tttatttcct tgatgctccc ggaggaaccg gaaaaacgtt tttaatttca      1260
     ttgcttttgg cgaggatcag atcgcgaaat gatgttgctc tagcgttggc ttcatctgga      1320
     atagctgcaa ctctgctaga aggcgggcgg actgcacatt ctgccttgaa attaccacta      1380
     aacatgcaaa tcacagaaac accaatttgc aacatcgcca aaaatagcgc aatggccaag      1440
     atcctacagg tatgcaaatt gattgtttgg gatgaatgca caatggccca taagaggtca      1500
     ctggaggcac tggaccgaac gttgaaagat cttcgtgaca accaaaatat ttttggtggg      1560
     gccatgattc tgttgtcagg tgattttcgt cagactcttc cagttattcc ccgatcaact      1620
     gttgctgttg aactaaatgc atgcctaaaa tcatcaaatt tgtggcagta cgtaaagaca      1680
     ctccacttaa caactaacat gcgagtattt ttgcaacaag atgaaactgc atatgtgttt      1740
     gcgaagcagt tgttagacat tggaaataat aaagttgcag tggacacctc gaccggattc      1800
     atcacattac ctacagattt ctgtcacatc acagactcaa aagtggaact tattcagcga      1860
     gttttcccag atatagcgca aaagttcaat aaccataatt ggctgggtga acgagcaata      1920
     ttagcagcga aaaataaaga tgtcgaggat cttaatgcga ccattcagaa ttttcttcca      1980
     ggacagttgg tttccttcaa atcagtcgac accgtaatga accaggatga cgtagtcaac      2040
     tatcccactg agtttttaaa ttcactggaa ttgcctggat taccacctca caatttgcag      2100
     ttaaaagtgg gatcagttgt catcatgctg cgtaacatta atcaacctcg actatgcaat      2160
     ggaacaagac tggctgtgaa aagactgatg aataacgtca ttgaggcgac aatcataaaa      2220
     ggaaaataca aaggagagga tgtcttgatc ccgcggatac cgatgattcc aacggactta      2280
     ccattcgatt ttaaacggtt acaatttcca gtgcgtctgg cctttgcgat gaccataaat      2340
     aaatcgcaag gacagtcgtt agaagtttgt ggaatcaact tggagtttcc ctgtttcgcg      2400
     catggacaat tatacgtcgc gtgttcgcgc gtcggaaaac cgtcttcttt gtttatttac      2460
     gcaccacaaa acaaaacaaa aaatatagtt tatgagaaag ctttaaatta attaacagac      2520
     tgtattttaa cagtgtgtgt ctgtgaatat caaatttaaa ccttataaat agccagtatt      2580
     tcaggatgag gcagtacgaa gtctgccggg tcagctag                              2618
//
ID   Helitron-N2_DT repbase;    DNA;    INV; 938 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.08, Created)
DT   26-DEC-2011 (Rel. 17.08, Last updated, Version 4)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-938
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1378-1378 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 938 BP; 277 A; 163 C; 165 G; 333 T; 0 other;
     ttataccctt gcagagggta ttatgatttc agtcagaagt ttgcaacgca gtgaaggaga        60
     cgtttccgac cccataaagt atatatattc ttgatcagca tcacaagacg agtcgatcta       120
     gccatgtccg tctgtccgtc tgtccgtctg tccgtctgtc cgtctgtccg tctgtccgtc       180
     tgtccgtctg tccgtctgtc tgtttctacg caaactagtc tctcagtttt tgagctatcg       240
     ggatgaaact ttcccaaaag tcttctttct attgcaggta gtatatatgt cggagccgac       300
     cggatcggac aactatatct tatagctccc ataggaacaa tcggaaaaaa aaactttaaa       360
     aaattctagc ttcggtgttt tttgaaatat taccttctac ttttggggat gttatttttt       420
     aaatatttct gaatttcgaa ttaattattt aaaaaatcgg actactatat catatagctg       480
     ccataggaac gatcggaaaa ttaatggaaa agtaatagga aataaattct agcttctttg       540
     gtttttattg tattatcttc tactctagga tatgactctt tttaaatatt tccgaatttc       600
     aattttaatt taatcaaaat cggacgacta tatcatatag ctgccatagg aacgatcgga       660
     aaattaatgg aaaagtaata ggaaataaat tctagcttct ttggttttta ttgtattatc       720
     ttctactcta ggatatgact ctttttaaat atttccgaat ttcaatttta atttgatcaa       780
     aatcggacga ctatatcata tagctgccat aggaacgatc ggaaaattaa tgagaaatat       840
     tagaaaattg aacatttttg cgatttgtta attaatagga atgatctgca agggtatata       900
     agcttcggct ggccgaagct agcttccttt cttgtttt                               938
//
ID   Helitron-N2_HMM repbase;    DNA;    INV; 1102 BP.
XX
AC   .
XX
DT   08-MAR-2013 (Rel. 19.10, Created)
DT   08-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1102
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2640-2640 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. The 5' end is uncertain. The 3'
CC   terminus is CTAG/TA.
XX
SQ   Sequence 1102 BP; 347 A; 171 C; 161 G; 423 T; 0 other;
     atccatacct atattataaa ttcgaaagta actctgtctg tctgtctgtc ttttacgcaa        60
     tcagggccaa accgctaatt taattgtgat aaaatactca tatagagata cttgagggtc       120
     tcgggatgaa cataggtact tttttttctc atatttgtaa tattgtcgat atatactaat       180
     atattaaaat acttattaat ttgacatgca atttattccg ccatgttaat aacaaccgcc       240
     gttgctaagc aacggtttgc aaagtttgtt gttagaaaac gtcacccaaa atgagcttgc       300
     ttaacgcata catggcgcgc gccgactcaa ccttatgaga cacaaaaaca atgttctaca       360
     aaaatattgt cccttaaata ttgtttaaaa aagtccgcga tggtatatgt ttatcgaggt       420
     atagatttgt ttacattaac gggattttga tgatttctat aatttgatat tcatccttat       480
     gaaaataaat ataatagtca cttttagcat ttcatctaga ttgaaattat agtttactgt       540
     ataacattct aataaataat taaggagatg tcactgattc gaaatgacct agcctacggg       600
     cggcatagta tgaccgacgc gaacgggcag atgactttga tggttttgta aattttcata       660
     cattttcgaa ctactgttaa tttttatgta attatttgct gtttataatt aatttatctc       720
     agttcggtta tctataccga tgttatacac ttaaaatatc gtaattttaa tcatttggga       780
     ttttatttga tattgttcgc aaaaattatt aactatttaa tatagaaaaa tgtttagtac       840
     gcgcgcacgg caaactttag gtactttttc taatattaag aatttccttt agttactttt       900
     acttcttttg tttgttcatt tcaattactc agatattttt tctaataata aatctccact       960
     tattattctt ttttaactta ttttaattat ttaggcttat attttcttac taattctatt      1020
     gaaaaccgaa aataatttca taaatatatt taataaatat tcgtatagtt caagcgggcg      1080
     tagccgcgtc cgggtccgct ag                                               1102
//
ID   Helitron-N2_LMi repbase;    DNA;    INV; 3039 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3039
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3230-3230 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 3039 BP; 993 A; 521 C; 551 G; 974 T; 0 other;
     tgaattgctg ttcgttagtc tcgctaaaac tcgagaacgg ctgaaccgat ttggctaatt        60
     ttagtcttga aatattcgtg taagtccagg gaaggtttaa acggtgataa aatatggaaa       120
     agttgtccgg aaaagaggaa aatcgggaaa aactgaaaca gctttttcca gtgagctatc       180
     aataccgttc gtccaattgc gataaaattt tgtacatttc atgttgaaag caagaggaag       240
     gttcgcatca aataaaaatt tggaaaagtc gcccggaaag taggaaaatt taggaaaaac       300
     cgaaagcgat ttttttctat gaataaaaat caattgccac atggttgtaa gagcatcact       360
     tgagtacggc ttgacaggac aaggtttgta tgaaataaat tttttggaaa atctaccgga       420
     aaattggaaa atttgagaaa aactgaaagt gcgtttttca atgtgttttt gattgaattc       480
     agcactataa ctgactattc gcacgacgga gaggggtaat tctttttttt tttgttcatt       540
     atggtcttgg aaaagttttc agtaaaaaaa aatagggaca gttaaaaagg aaagtcgcaa       600
     aattcgaacc aagttccttt ttcaatgtgt ttctaaatgt actcaacact ataagttgag       660
     aaccgttcat ccgattgcga taaaattttg atcatttgac gttcaacgaa agatgaacgt       720
     tcttatgaac taaaaatttg ggaaagttac ccggaaaatt tgaaaattcg cgagaaactg       780
     aaagagcttt tttcaatggg atatcaatat cattcgtctg attgcgataa aattttgcat       840
     atttgacgtt caaagcaaga gtaacgttca tgaataaaaa tttggaaagt tccagaaaat       900
     tggaaaattc agaaaaaaga gagaagctta ttcacgtgtt tttccgacat aaaacaatat       960
     aatgacctaa ttggctagtg aacgcgcaat attggcggca aaaacaaaga tgtcgatgat      1020
     ctcaatgcga caattcagaa tttccttcca ggagagttgt ttacttacaa atcagtgaca      1080
     cagctacaaa ccaggatgac gtagtcaact atcccacaga atttttaaat tcattggaat      1140
     tgcctggact accaccacat aatttgcaat taaaagtagg atcagttgtc atcttgctgc      1200
     gtaacataaa tcaacctcga ctttgcaatg gaacgagact ggctgtgaag aagctaatga      1260
     ataacgtcat cgaagccaag atcatcaagg gaaaatacaa aggagaggat gtcttgatcc      1320
     cgcgtatacc gatgattcca acggatttgc cattcgcttt taagcgttta caatttcccg      1380
     tgcgtctggc ttttgcaatg accatcaata aatcgcgagg ccaatcgttg caagtttgcg      1440
     gaatcaactt ggagtttccc tgtttcgcgc atggacaatt atacgttgcg tgttcgcgcg      1500
     tcggaaaacc atcatcttta tatatttacg caccgcaaaa aagacaaaaa atatagttta      1560
     taagaaagct ttaaattaat taactgtata accagctact atgtatatac agcagtggac      1620
     gtcttttggc caatatgatg atgatgataa ctgtgttgta tttaatgtag acaaaaatat      1680
     tgtattaatt tttaattgat agcaatattt ctttaataac caaacaaaat ttaaaccatg      1740
     taagatataa attacttaat gtgtattgtg tgcatttggg tatatatgtt gttactaata      1800
     catatatgtc tgaaataaaa ttcattttga tacaattcaa atatttttat tatagactat      1860
     attaatcact ctttacggta agaaacatat tttcacaaat ttccgcaatt gatacttgaa      1920
     tcggcaacat ataaataata attaatcaaa catcacaggc gaacccggct tgctgatgat      1980
     gtcttgactt ggctcgccag gacttgacgg catggcggga ggcctcggtg actcggacaa      2040
     gtctggttga accagaatat tgccgatgtt gtgctcctga cttttttcta tctcatacaa      2100
     atcctttagt tcttcggcag ttaaattaag ttctgaaaat gttattccct cagatgtgat      2160
     ggtgacattg ttgagatgta cttcggtttt aataacagta gttgtttcac tcgatttttt      2220
     tgttccttag ccctattaat tcgtattatt cggctcaaat tgtgaccgca tttgatgcaa      2280
     aacttgaagg tatcagcggt tattgttaaa cattcgtcgc atcttaacat tttttgtgca      2340
     actaggacag gtacttctgt tgttctgccg ttctatccac ttttttacaa aaggacaatg      2400
     catttttaaa agttaattat aacttctgaa aaatagttaa gaagtcaaag agtaaatagc      2460
     ttttccagag agtaattatt gttcgatatt tcgctttata tacttcaaat caaaaaatat      2520
     cttgaattac acactttctg aagtatctta tccggtactt cagcgctcaa gctatctcca      2580
     caccagattt catcacaata gattcagtgg tttatgtaat gatatatagc caaatcggtt      2640
     cagccgttct cgagttttag cgagactaac gaacagcaat tcatttttat ctttgacagt      2700
     tcatatacgg gttcagatcg tgtaaagcga actttactct ttcaaagtat atttctgaac      2760
     gcacccaaca caacaaccaa gtcattattt tacatgtttt aaatctaaat tttcctcgca      2820
     atttttccat attttatcac cgtttaaacc ttccctgaac ttccacgaat gtgacatgaa      2880
     cattatcctg gacatgtgtg cgatttgccc actctttccg cccactatcg agccgatact      2940
     tagactatct gatgatgcct ttataaagct actgggtcta aaatacatat gatttaaatt      3000
     aatatggttt atattaagag gtaagtgata cgaagttca                             3039
//
ID   Helitron-N2_PBa repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1316
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 609-609 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. The 5'-end is not determined.
XX
SQ   Sequence 1316 BP; 428 A; 202 C; 198 G; 488 T; 0 other;
     acacacacac acacacacat cttattcatg ttctttttag aggtatgagc agcgccaagt        60
     gtttttacat aaaatttttt tatttaaata aaattttatc atttatttta tactgttact       120
     ttataattct ttgtgataaa aacgtaggtt gagtaaagca attttgtgat ataaaaatat       180
     tttaaagcta aataattact accacttggg ttagaaaaag aagtttttaa tggatagaaa       240
     gatatacata taatttggtt tttattattt ttaaattaaa gaaactacta cttgagtttt       300
     atttttttaa aacagtggtt tatcaaatct tttatacgat tgaaatatat aatttgacta       360
     aaatggactt gtagctccat gtttgtaaga ctataacttg gcgccaatta ttgatatcaa       420
     atcttttata taaattttac acaatcattt gagttggcaa tatccactat acttgacacc       480
     ctttttttac tttttttaaa aaaaggtaat tttatagtga tatcagacat tttgaagtat       540
     tccactatac ttgacaccct ttttttacct ttttttaaaa aaaaggtaat tttatagtga       600
     tatcagacat tttgaagtat tatattatat taccggcggc aatcgataaa atagatagca       660
     atttttttat tcaattattt attttttttt tcttataatc tcctatctta ttatgttatc       720
     ctaataactt ttacgatttt cgaaggtatc gagagacacg tgaggataac atgatgaggt       780
     aggaggttac aagaagtgat acaacttaaa tttggcgcca tgcagataat aaaatattat       840
     tatattaccg gcggcaatcg ataaaataga tagcaatttt ttttcaattt tttttcttat       900
     aatctcctat cttattatgt tatcctaata acttttacga ttttcgaagg tatcgagaga       960
     cacgtatccc aactctcttc cgctgggtcg ataagattaa tagtgacatc tcgtgataga      1020
     cgttgcagcc gtacaaaggc gacgatgatg acgtttctta aagtaaaaat ttccaaatcg      1080
     gactttgcat agcaatatct ctgcttgtag ggcacgtagc agaaaaataa aaatactttt      1140
     attatgcaag tcggactcaa gctatcgatc aagcctactt agaacttgat cggtttagcc      1200
     gttattgaga ttcgataatt tcagatgctc gaacctcgac gactcgcgta aagtcacacg      1260
     gcagtgttct cggttgatct tgacttgaca cccgagacac taccgtgtct cctgat          1316
//
ID   Helitron-N2_PPo repbase;    DNA;    INV; 345 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-345
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2740-2740 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Termini are TA/TC..CTAG/TA.
XX
SQ   Sequence 345 BP; 121 A; 57 C; 57 G; 110 T; 0 other;
     tctatactat tataataaag cgtaaacaca cacttctttg ttgcctaaga tgtcagcaat        60
     tacagcatat ttttgaataa ttttttttta ataaaaagcc ctacacttac gtcacgcttt       120
     aggctatata ttttcacgcc attaaactta gggggtaaat attttggata aaaaccctaa       180
     tgtgggaaag agaccataag ttgctgccaa catcaaggaa gcaagattgc caaggtttgt       240
     catgtcatgt cattttgaca tttgcaattg ataatttgac aaatgtaaac aataaaataa       300
     aattttcata atttcatgcg gatgaagtcg cacgggaaca gctag                       345
//
ID   Helitron-N3_AAe repbase;    DNA;    INV; 1854 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 26.01, Created)
DT   09-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Helitron family from Aedes aegypti, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1854
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1854
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 133-133 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to the consensus.
XX
SQ   Sequence 1854 BP; 554 A; 396 C; 378 G; 526 T; 0 other;
     ttttgacgtt ggataacgtc ttacggcaac atactggggt acaatttcga aaaacgaaaa        60
     atcgctcgcg tcacgaaaag tggttagatt ttgactgtta ataacttact aacgcccgga       120
     tagattttca agattcttgc accaatcgat tggaaatctt tctacgaatc tactccaaca       180
     atgaaaacta ttgattctca tgactaaact attgaaaaat tgggaaatat cgaagcatgt       240
     cttatttttc atagaaaagc acatttttct tgtgtattcc tgacacagac atcattgcgc       300
     gatatcttag ccactttcgt cattcaaagg gaaacgcccc tttcggtctt cttcttactt       360
     ctctttatta tctcgtgttc agtcgaagcc aaccaaactc gacttcacgc gcgcatcagt       420
     caatcgttga ccagcaaccg gagaaggact catatcggaa taaattttac acgttcgtcg       480
     ctgctgctgc tgctgtttat tcccaagcta aaagctgcgg gttccgtgta atcgctcatc       540
     atggcccttg gcatccagct agcccatcga attcgtggag aatgcgtcca gaaaccttga       600
     taattaccgt cggaggagtg agcaaaccat cgaatacaag gatggacaag aaagcacaaa       660
     attaccgacc gcatttcaat ttaatcgtct tcggtgatct tttggtgtgt ttctgtctaa       720
     caatggaatg aaaacccagt ttgatcgacg gtgactacca ccaaccgtcc ttttcaggac       780
     gacaatttca ttttaaaaga gttgtgagaa ttttccaccg tgaagagcga cattactgat       840
     gattggatgt gattgattca gattttggtc agtcatttgc acgcaaccat aaatgggaaa       900
     taaatttccc attgtgcgcg cgcggggcga tcgtcgacag tgtgtgcatg agtcggataa       960
     attgcgaacg gcacttgaat gaagaatccc tcccggtttg tttcgcattt agagatgatc      1020
     gcataatgcc gttgtcgccg tcgctaccta catgatacta gagcgatcag tatcaactcg      1080
     tcgaacacag agctaaaact aatcagcaac agctttgttg acgtttcgat ttggtaagac      1140
     attgtcgatc gaatggaaat acgcacacag aaaagactgc gaaaatgcta ccgccgcccg      1200
     acccgaacga cgggaaccta tgttaaactt tgtttgccat ttatctccgt tgaaaactaa      1260
     tcatccgaaa ctataattga taactaaata aattatttaa tcaattgtgg ccctgaaaag      1320
     ggcagttgtt tgaaattgtg cttcaatgca atttaagcgc gttcgccacg gatacgacga      1380
     gtatcgaaag gcttcggaac ccacttaagc aatcaatctt agtggatcat gcgtggacct      1440
     tcaagcggaa tatttgtttg ttgagcaaaa gttaccgctc atgcttcttc ttccatcgac      1500
     cggttgaagt gttaatcgaa ccaaccaaat aataacacaa aatgttcata ataggtcaga      1560
     attgacatgc aacaaatagt gtgaaaattg attagaagag cacttatttt cgacctacaa      1620
     gaattctgtg ccaattttcg gattttcata caaagtaggc caaaaccgta tcgaaaatcg      1680
     gtcggtcgaa aatcatcgaa aatcggtcga aaattagtgt tgggtcgaaa attggtgctg      1740
     ttctcttaga aatctttcat aagttcgtga cggtctcaag ccaggaaata gaagaagcta      1800
     aagttatcca acgtcacttt ggcggtcgta tctcggaaac aacctcttac tttt            1854
//
ID   Helitron-N3_BTa repbase;    DNA;    INV; 889 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-889
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 636-636 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 889 BP; 291 A; 174 C; 203 G; 221 T; 0 other;
     tcattaatat aaacttcgaa ggattcagac tttcagcgat tccacctttt tctatttcac        60
     tcgagaggtt gccagattgt gcgataaatg tgaatatttt acattgattt gaattgagaa       120
     aagtgttaaa aaagcaactt atctggcaac aatagagtcc gggagggacg agaggctgcc       180
     ttcctgggaa aacccatgat ttagccggaa atgtcattaa aacaattgat tccgtttgaa       240
     gcatcaattg tatactaagg gaaagctatt ttaaaataat aattgtaaat ggacacagat       300
     gctacagaga gggaaaaagg aaagggaaag gaaatgaaat taggatatga ttactaatat       360
     gcaatcagag agaataaaac aaaaacatca gagaaattta tatgcgatga aagtataaga       420
     aaaaaacacg agtgggctca ttgcgattcg gaactcgaac tatactatcg ttgagcagtt       480
     tttagacccc tacgccaccg ataatcttct taagaggtaa agatgaactt ttgctacttc       540
     agcaagtcaa atcgcggaag gagatccatg gactgtccac ccgatgggat gacgtcccag       600
     tcaaatgcgt ttttgaagaa atgatcgatc cccatcatcg cttcatctcc acacatctat       660
     tcatgtgcaa atgatggcat gctccggcaa caaggttctg tgacgaaatc atttttgcct       720
     ccagagtctc caaaatgtat acatcttagt gatcaaatgt ccaatcactg agaaaaatgg       780
     ctcgcggagc gagccgaatg tcactcgcgt agcgagtgat cgggggtcca gggggcgcag       840
     ccccttggct ggccgtgacg gacgcgcaaa gcgcgtccag aacggctag                   889
//
ID   Helitron-N3_DMo repbase;    DNA;    INV; 776 BP.
XX
AC   .
XX
DT   15-OCT-2020 (Rel. 25.10, Created)
DT   15-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-776
RA   Bao W.;
RT   "DNA transposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2847-2847 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 776 BP; 234 A; 152 C; 158 G; 231 T; 1 other;
     tataccctga acccattgaa aatgggaaat cagggtataa tggttttgtg aaaagtatgt        60
     aacaggcaga aggaatcatc gcagacccca taaagtatat atattcttga tcaggacgac       120
     gagctgagtc gatatagccc tgtccgtctg tccgtccgtc cgtccgtccg tccgtatgag       180
     caaaaggatc tcagaagata taagagctag agagctgaaa tttggcatgc atactcgtgt       240
     ataccatagg cagtacgagt ttgctttatt ttttcgataa ctcatccgat aactttttta       300
     tcgagaataa tcgaaaaatc gactttgttt tttcagccta atttgaacac ttttagacct       360
     ggagacttca aatttgcgtt gtatataaag ttaatggata caaagatttt gtaatttaca       420
     gattttggat accacgcccc attcgccccc aatttgtaaa aaacgcattt caagtactag       480
     agacttgtgc tttggaatgt acacacattt tagccatatg attacgcttt gaaagtttca       540
     ttaagatcat acgtctacaa aagaaattat tcaacaaata aattctcata atattgccca       600
     cactgcagcg cagcccaagc gcagtcgctg cttactgcgc agttagcaga gcgcgtgctt       660
     ataagtgcat gtgtatgtat gtgtgmataa aagaagtcca gaatgattag aatatcagct       720
     tggagggttc agggtatctc ctagtcgagc agtctcgact ggagccttct tacttg           776
//
ID   Helitron-N3_DSer repbase;    DNA;    INV; 1978 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1978
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1843-1843 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The termini are A|TC..CTAG|T.
XX
SQ   Sequence 1978 BP; 592 A; 408 C; 445 G; 529 T; 4 other;
     tctatctata tatataatat gctctgttcg tgtctacttc cttcatagac ttgaaaagtt        60
     ctgaaccgtt taagcccaaa tttttacaca acatgcgttg aggttccagc tcggttattg       120
     tctacttttg atgttgatag cttatctgcg tttgcgaata tatcagtttt tttcgcgttt       180
     ccccgtgccc ctactgctgc gccctctaca ggcagccagc tgaatcgaag catttcctgt       240
     caaacattca aaacatattg aaagaagaaa ttggagatta aaatttaatt tttttgttca       300
     ggttcagtaa gaaacgaagt catgccaccc aagaagtcga gtttgggtcg tcgtactcgc       360
     aatacagaag caaaaagacg taagattacg aatatgactg acgaagagcg ggcctccatc       420
     cgagagactg agcggctgag agcaatgcag atgcacaacg cggaatcagc agaaagacga       480
     gcagataggc ttgagagaaa acgattgaga gttaggcagt cgcgttctgc agcaatcgat       540
     ttgattcact ctcaaaataa tgaacgcgac agggcaaggg tagctgaagc ttggatgctc       600
     caggaggaac ggggaaaaca ttcctcatta cattgattct ggctacggtt cgagctaaca       660
     aggacatagc tttagctctt gcttcatctg gaatcgctgc gacattgtta cctggtggga       720
     ggactgctca ttcagcgctg aagttgccgt tgaacatgca aatcatcgag actcctacgt       780
     gcaacatttc cagagcatct ggcatgggaa aagtattgca aagatgtaaa ctcattgttt       840
     gggatgaatg cacaatggca cacaaaaaat cgctggaggc tctcgatcga tcattgcggg       900
     atttgcatgg agctgtccaa ccatttggga atgcgttaat attgctcgca ggggatttca       960
     ggcaaacgtt gcctgtgatt tcccgatcga caccagctga cgagataaat gcttgcctga      1020
     aatattctat attgtggcaa catgtacgta cattacagtt gaagacgaat atgcgtgtcc      1080
     agttacagaa cgatgactca gccgacgtat tctcacgaca gctactggac atcagggaac      1140
     ggaaagctgc cagtcaatga gacgtcgaga aaaatagtat tgcccgagaa tttctgtaat      1200
     ttagttacat cgaaggaagg acttatccaa aaagtgttcc ccgatatccg aataaattat      1260
     aggaatcacg attggctcag tggacgagcg attctcgctg ccaagaacaa wgatgtctac      1320
     cagctcaatc atgtaatcca atccagcata gaaactgacg aaattacata taagtcgata      1380
     gataccgttg tggaggcaga ggaagcagtt aattacccta cggaatttct waactcactt      1440
     gatctgcctg gaatgccacc acacatattg aaattaaaaa taggtgtgcc gattatcatg      1500
     ctccggaata taaatcagcc gaaactctgc aacggtacgc gactcgcagt caagaaattg      1560
     atgaacaacg tagtagaagc aacgatcata acwggtcctt tcaaaggtga agatgtcctc      1620
     attcctagga ttcctctgat cccgactgat acaccgttcc agttcaagag attgcagttt      1680
     cccattcgtt tggcgttcgc aatgaccatt aataaagctc aaggtcaatc tctggagttg      1740
     tgtggtctag atttggatgc agattgtttt tcacacggac aattatatgt tgcgtgttcc      1800
     cgtgtcggaa aaccagatag tctttatatt tacgcggaga atggagaaac gaagaatatt      1860
     gtataccmac aagtattaca gaattaaatg aatttgaaaa ttattctttt ttgtttgact      1920
     tatttcttat gcgtgcaacc acaatatgcc acagagaaac gtggcagggt acagctag        1978
//
ID   Helitron-N3_DSuz repbase;    DNA;    INV; 552 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-552
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 103-103 (2022).
XX
DR   [1] (Consensus)
XX
CC   95% identical to consensus.
XX
SQ   Sequence 552 BP; 146 A; 139 C; 113 G; 153 T; 1 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtcggaaagt atgtaacagg        60
     cagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccgtatg aacgctgaga tctcggaaac       180
     tatacaagct acaatactgg gattaggcat gcagattcct gagattcctg cgcagcgcaa       240
     gtttgtttca gcagagtgcc acgcccactc taacgcccac aagccgccca aaactgtggc       300
     tcctacagtt ttgatgctag aataaaaaat tttaactgaa atgtattgkt ctcgtcaata       360
     cctatcgatt gacccaaaaa aaatttgcca cgcccactct aacgcccata acgcttaaat       420
     ctgtctaccg ccggtaggtg gcgcatttca atctcgcttt gctgcttgca tatctccatt       480
     tccctttggt cccattagct gagtaacggg tatctgatag tcgaggtact cgactatagc       540
     gttcttcctt gt                                                           552
//
ID   Helitron-N3_DT repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   21-AUG-2012 (Rel. 17.09, Created)
DT   06-AUG-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_DT.
XX
NM   Helitron-N3_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-616
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(9), 1770-1770 (2012).
XX
RN   [2]
RP   1-616
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 616 BP; 169 A; 153 C; 117 G; 177 T; 0 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtgcaaaagt atgtaacagc        60
     tagaaggaag cgtttccgac cccataaagt atatatattc ttgatcaggg tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccgtctg tccgtctgtc cgtctgtccg       180
     tctgtatgaa cgctgagatc tcagaaacta caaaagctag aaggttgaga tttcccacac       240
     atattctttg gcttcctacg cagcgcaagt ttattttagc cgagcgccac gccccctcta       300
     acgcccacaa tcgcccacta acgattttaa aatgggtcct gcgcccacat ctttaaagat       360
     ttccgagaag tataaatgca attttgttgt gtatatttat acctatcgaa atgtagaaga       420
     catttttcaa atcggaccat tcattaaaaa gttatacgca atcaaaaatt atatatctat       480
     ctccctcgca ctccctttag ctgagttacg attattagtc gggacaccaa cccgacacag       540
     cgttcgcact ccctttagct gagtgacggg tattagatag tcgggacaac aacccgacta       600
     tagcgttctc tcttgt                                                       616
//
ID   Helitron-N3_LMi repbase;    DNA;    INV; 1659 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1659
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3231-3231 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1659 BP; 454 A; 305 C; 336 G; 564 T; 0 other;
     tcctatacat attataaatg cgaaagtttg tatgtttgtt accgcatcac gctaaaacta        60
     cagcactgat ttagatgaaa tttcatatag agatttctta tgtcttggat taggacatag       120
     gctacttttc aaaatgttta ttacaagtta tttatttgaa atatatccat agaaatacgt       180
     aacggttgta agaagcttct aatacaacag cagaagagca ttgtagggta tgtcatgttt       240
     agccgcgagg gttaacgcgt catgtaatag acttccgtta ttttgggcaa tggttcgggt       300
     cctgctatag tgaaattttt tttctttgtt attgttatct tttttacttt cgaatataca       360
     aaaagattct tggatactgc caaaacggct taactgatat ataattacat acacaagaaa       420
     tctgaatgtt ggcgtttatg ccgcattcat tttcatttgt tgtaacaaat gaaggaagta       480
     tgtatataaa ttgaagactt taaataaaat atgctctaag taccatggca agaaaaaaca       540
     ttgacgtttt gtgtagaatg ggatctagat accaagccct attttgtgta caaagcgcga       600
     actgccacgt ataaatagcg tacgtaaact gcaacgaaag tagtagcaaa tgcactcaac       660
     agatggcagg cggtacgctg cagttaacac atgaaaattt ctcaggagtt ttcgagacac       720
     ttcagctata gatgttcgaa cattgtgatg ttatcgtaat tctttaaaat tgtattctct       780
     ttggatttca atgaataata gtttctttgg tgatttcgat tatttatagc attcgaacgt       840
     ttgctttagt gtgtgtgact tcgttgttca tagttttctt ttgttggttc gctttgcatt       900
     tgtaggatct caacagttcg tttctccgtt agattctttt tatctcttct tttctccgtt       960
     aggtttgttg tttatttcgt tacttttctc cgttaggttg ctgtttattt tgttccttta      1020
     cttggcattt gttttcgatt actgtattgt tgttattgta gttacttact ggagctgtca      1080
     ggggtgccat cccacaagtt ggagctgaag gtgggtgtgc ctgttttatt gatgcgtaac      1140
     ttggatgcac cacgattatg caatggcacc aggttacgca tcacggacct gagaaggcat      1200
     atcgtgcagg ccaccatcat caccggtgga gccaagggag agactgtatt aataccacga      1260
     attcccatca tcccaacaaa cttgccattc cagtttaaac ggttacagtt cccattgaaa      1320
     gtggccttct cgattactat aaacaagagt caaggacaaa cattaaaagt ggcaggtatt      1380
     catctggcca ccccatgttt ctcgcacgga cagctctacg taggctgctc ccgtgtatcg      1440
     agagctagaa atctctacgt atactcggag aacaagaagt ctcgaaacgt cgtttacagg      1500
     gacgtattgc aatagatttt tggctctcca tccgttccaa gacaattata tattccgtgc      1560
     taacaatgtc gcaaacagtc atgtagttat ttatgccctt tcttggcact ttaatgtctg      1620
     actattgaac cgcgggtaac accgcgggga gcagctagt                             1659
//
ID   Helitron-N3_PBa repbase;    DNA;    INV; 3967 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   15-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Helitron-type DNA transposon: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3967
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 610-610 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. The 5'-end is not determined.
XX
SQ   Sequence 3967 BP; 1430 A; 507 C; 717 G; 1313 T; 0 other;
     ctgtaaaaat aaaaagttct cggatgcaaa gatatgaatc ttgagtttta tttttatttt        60
     tttaagaaga tataatttgc gtcagtaatt gaaaaacttt ttttccatta aaaagtaaca       120
     cttttatata ataatctttc acatacacgc tgcgcgtaca cttggcgact tttttacttt       180
     ttataaaaag taagtttgtt gtgatatcat ttattttgtt gtgttaagta ttttataaat       240
     aatttataaa taatatatat atttccatgg taaatcttta cattagggga cacagctccg       300
     atgaccttga ccttgatata tgttatagag gtgagggtac tgatcatctc tttcttataa       360
     cttaattggc ggtctcgtat agtttttgag atatacttat ataaatgtta gtaaattttt       420
     acattagggg acatagctcc gataatcttg acccggacat atattgtcaa ggacactctc       480
     ctgagtaaca atcaaaaggt ttaaccagta gttattgttt attaaaaagt tatatacaga       540
     aaaaatttga aaaatacgtt aatttttatc agtgtatcaa catatagatt tgaattgaac       600
     tttgtgcaga aagttgtaaa cccatgtgga acctcgcttc gcattgaagt gtatgtttgg       660
     agacagtatg ttccgtcccc cctcctacgg aggggctcca ctactaaaag atctaatcta       720
     accccgtatc acagatcaat taaataattt agcaatttat ctttatcatc gataacgctg       780
     agaaactcgt gaagacgcat gttgacgata caaacgacgc acgactaata cctaataaat       840
     aaactgaaag ataccaccaa aatataaata ctaccttgaa ataacatata tatgtatgta       900
     tatgtatgta tgtacactat ccatcatata caaggtgtca tataaacaga ataataacat       960
     ttcaaaatta agctttatgt aagtatatct cgaaaactaa acgagaccgc cgattaattt      1020
     ataaggaaaa gttgatcagt acctcacctc tataacatat atcaagctca agatcatcgg      1080
     agctgtgtcc cctaatgtaa agaaatacca tttccatttt ttgccacata attataacat      1140
     gatgatatat cttgtacata caactgtaaa aataaaaagt tctcgggtgc aaagatatga      1200
     atcttgagtt ttatttttat ttttttaaga agatataatt tgcgtcagta attgaaaact      1260
     tttttccatt aaaaagtaat acttttatat aataatcttt cacatacaca ctgcgcgtac      1320
     acttggcgac ttttttactt ttttataaaa agtaagtttg ttgtgatatt attatcttta      1380
     ctatttacag tttcttatcc acttcgatta gttacacata tactttacat atttaaaata      1440
     ttatagataa aatattatat agatttttaa aatttaagaa agatcaaatg ataaactttt      1500
     ccatagtaat tttaataatt ttaagaatta gagtgagtgc tcttaaattg agtacttttt      1560
     cttaatatta atataatatt cttataatat ataatattct taacttttga aattaaaata      1620
     ataacaattt taacaaattt taaaagaata agtagttttt attaattata aaattctttt      1680
     aatgtctaca agttatttaa atttagttca cttatgaatc tatcaaccaa ttaatcaaat      1740
     ggagttaaat atttataatt cggtaaaaag tggttaaaat ttttaattaa aatggcgtaa      1800
     agagaactat agaaatttat tactttaaaa tttatatgtt tttagttgtt tataatttta      1860
     taattacttt aaagttacta tatcaaactt acaaatacag atttaaagca taatattgaa      1920
     gatattaaga aaattatata atctttaaat aaaatatgaa caaatacata aatgtattaa      1980
     taatattatt aatagattaa ttttatatat ttctccagaa attttatatc tcagttgaat      2040
     tattaacagt aatttatctc taatttggtt ttagttaaat taaactaatt cctaaatatt      2100
     tgtaagttaa aaatttaagt caaaattaaa tagtaatttt ttacattaag tatgattaat      2160
     aataagtatt gaataatgga ataagtttaa ataatttaat tgctctataa atgtatgtac      2220
     tgagtttcaa taaaatcggc gaattacagc tcatatagct ccgaattgta tgttagtttg      2280
     gttttagata aaatcttgtc catatttgta aaatatttta atttttatgt aatatcaaat      2340
     aactttctat ttgattaata aaatcctttt tatatcttta tatttatata aactttaacg      2400
     tcacttgtgt aggtccataa atcatcaata aaaataaaaa ttttttaaat gaaaaatttt      2460
     aaattaatat acaaaattgc gttatttaca attctttacg tctatagact attaaaataa      2520
     gatttgaaaa tatttttgaa atttcaaggt cacacctgtg ccaaaatgtt cgacctaaat      2580
     aaatatcgaa tatgaagtcc atacgattaa aaataaaaat tttcaaaatg gcggcagaaa      2640
     aattttaaaa ttaaagtaca aaattgttta agattttaca ctctaggtct atagatcatg      2700
     aaaataagaa aatgaaaaat gaccttgaaa atatttttgg aatttcaagg tcacacctat      2760
     gccaaaatct tagttttaaa taaacatata taaatgctga atttgaagtc cgtacgatta      2820
     aaaataaaaa ttttcaaaat ggcggcagaa aaattttaaa ggaagagttg cggaagaggt      2880
     gcaaagatat gcggaaagat tgtggaagag ttgcggaatg gttgcggaat agttgcggaa      2940
     aggttgcgga agagttgcgg aagaagtgca aagatatgcg gaaagattgt ggaagagttg      3000
     cggaatagtt gcggaaatgt tgcggaatgg ttgcggaaag gttgcggaag agttgcggaa      3060
     aggtatgcgg aaaggttgtg gaagagttgc ggaatggttg cggaagagtt gcggaagagg      3120
     tgcaaagata tgcggaaaga ttgtggaaaa gttgcggaat ggttgcgaga gagttgcgaa      3180
     atggttgcga agatgtgcgg aaagattgcg aaagagttac ggaatgcgga atggttgcgg      3240
     aaattgcgga aggttgcgga agaggtgcaa agatatgcgg aaagattgtg gaagagttgc      3300
     ggaatggttg cggaaggttg cggaatagct gcaaagatat gcggaaagat tgtgaaagag      3360
     ttgcggaatg gttgcggaga tatacggaaa ttgtgagaaa gttgcggaat ggttgcagag      3420
     atatgcggaa agattgcgga gatgcggaaa aattacggga ggattgcgga atgattgcgg      3480
     aagtatgcgg aaaagttgcg gaacggatgc ggagatatcc ggagaggttg cgggaagaga      3540
     gaaaatatgc agagagactg cggaatgacc atgaaattat ataacattca tatttcgcgc      3600
     tgaggacttc atcgccgccg ccgcgtagtg gcgaaaattg caaccgtagc ccatacggag      3660
     ggcgacgata ataatgataa taatgacgac gtttcttaat agtaaatttc taagtatcgg      3720
     actttgaatc gtaatatctc cgctcatacg acacggagag gaaaactaaa aacactttta      3780
     ttatataatt cgaacctaag ctatcgattg cgcctattca gaaattgatc ggttcagccg      3840
     ttactgagat ccgataatct tgatggttag caactcgtcg gctcgcgtaa agagacacgg      3900
     ccggtctcgc gctcgtgaag cgctggcgct cacacttggc gacgagccac gaccgtgtct      3960
     ctcgata                                                                3967
//
ID   Helitron-N3_PPo repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-252
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2741-2741 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 252 BP; 75 A; 39 C; 63 G; 75 T; 0 other;
     atatataaaa gaaagtcgtg ttagttacac tatttataac tcaagaacgg ctttaccgat        60
     atggctgaaa attggtgagg aggtagctta gagccaggag acggacatag gatactattt       120
     attccgttta tggatggatg tttctctctc tcgatgaaat ttggcacaga tgtagaggat       180
     agtctggaag aacacatagg ctatttactt tttttttaat tccacgcgga cggagtcgcg       240
     ggcgaaagct ag                                                           252
//
ID   Helitron-N3_PXu repbase;    DNA;    INV; 293 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio xuthus: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N3_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-293
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2720-2720 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Termini are A/TC..CTAG/T, ~85%
CC   identical to Helitron-N3_PPo.
XX
SQ   Sequence 293 BP; 86 A; 39 C; 70 G; 98 T; 0 other;
     tctatatata taaaagaaag tcgtgttagt tacactattt ataactcaag aacggcttta        60
     ccgatatggc tgaaaattgg tgaggaggta gcttagagcc aggagacgga cataggatac       120
     tatttattca ttttttttcg aatttatgcc ttgaagagct gctttttatt taacttacta       180
     atattataaa tgcgaatgtt tagatggatg tgatgtggat ggatggatgg gtgggctaca       240
     ctaattaagt ttttttatat atccacgcgg acggagtcgc gggcgacagc tag              293
//
ID   Helitron-N4_AAe repbase;    DNA;    INV; 3506 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 26.01, Created)
DT   09-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Helitron family from Aedes aegypti, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3506
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3506
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 134-134 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to the consensus.
XX
SQ   Sequence 3506 BP; 1003 A; 775 C; 716 G; 1012 T; 0 other;
     ttttgacgtt ggataacgtc cttcggcaac atatgggggt acaatttcaa aaaacgaaaa        60
     attgagcatg taacgaaaaa tggtcaggtt ttgaccgcta ataactcagc catttgtcga       120
     tagattttca atatttatac atcaatcgat cggaaattta tctacgcgtc gattcaaatg       180
     gaggacacta ttgattattg gcaacaaact attgaaaaat cgtaaaatgt tgaccccttt       240
     cttatctaac caatcacgtt caagcacatt tttgggttcc gcttcccact ataaaagcgc       300
     accggtcctg cttcttccct cagtcttctt tttgcggtcg gactgttcac acggtcgggc       360
     gagtcatttt cgctttgcgt ttgctcccgc cgtcacagtt caatttgtgt cgtcggaaga       420
     ggaagacgca aggttgattt gcggcggcga tgacgatggc ttgggcgctt ctccgagcag       480
     cgaactactg ccgctcggaa aaacgtccaa gccgtcgtca tcgccgccgc aaatttatcc       540
     gcgcttgcag atttcgactt tgaattcagc atcggtggtc aagaagcaag cccgctagga       600
     acgaaatacc acaggccctc tgagttgctg atccgaggag ctgcttctaa tcgagcgtcg       660
     gacttgtgaa atcgctcaag attttaagag tgagcatcgt ttgcagattt cgacttatgc       720
     ccggtaatca acaacccgtt gctcttgtgc gccatccacg tcacgtcatt tagctggttc       780
     gtcgtataag caaatcggcg cttttcaggg ccatcaaatg tgttgaaaag agttgaaaga       840
     ataatatttt cgaccttatt acatcttata tttctcaatc aatctcacag cttcatacaa       900
     aatttaattt gtcatgaata attgatggca cgacaatttg atactgtatt cgcggacgct       960
     gctgcagtgc cgtcacaaca tttcacaacg attgtaaaat agagtggcat ttccaacagc      1020
     ttcttagact tgccatattt tatgagaaca tatgtaacaa aattgcgaca tatttagaat      1080
     gcttctgaaa agaaattctc attgaacaat tttcatcatt ttggcaccca tggatcagaa      1140
     attttccttc atacaaaaga aaactattga ttatcaatag ctaaccattg aatattggaa      1200
     atctttctac gaatcgactc caataattaa aactattgat tttcatgaat aaactattga      1260
     aaaatcgata aatatcaagg catgtcttat tttccataga aaagcacatt tttcttgtgt      1320
     attcctagca cagacatcat tgctcgatat cttagccact ttcgtcatgc aaagggaaac      1380
     gcccctttcg gtcttcttct tactcctctt tattctatcg tgttcagtcg aagccaacca      1440
     agcttcaatg agccccgcgc acatcagtca atcgtcgacc agcaattgga gaaggactcc      1500
     tatcggaata aattttacac attcgtcgct gccgctgctt ctgctcttgt ttattcccaa      1560
     cccaagctaa atgctgcggg ttccgtgaaa tcgctcatca tggccatggg catccagcta      1620
     gaccatcaaa ttcgtggaga actcgtctag aaaccttgaa aattgccgtc ggaggagtga      1680
     gcaaaccaac gaaaacaacg aagcacaaaa ttaccgaccg catttcgatt taatcgtctt      1740
     cggtaatctt ttggtgtgtt tctgtctaac aatggattga caacccagtt cgatcgacgg      1800
     tgactagccc caaccgtcct tttcaggacg accatttcat tttgaaagag ttgtgagaat      1860
     tttccaccgt gaagagcgac attactggtg attggatgtg attgattcag attttggtca      1920
     gtaatttgca tgcaatcatt tatcacggct aaataatgct tctcgagaat cacagtgtca      1980
     agaaataaaa ttcccattgt gcgcgcgcgg tcaggtaaat cgcgaacggc acttgaatta      2040
     agaatccatc acggtttgcc tcgcaattag tgatgattga atgatgccgt tgtcgtcgtc      2100
     gcatgctaga gcgatcagta tcaacttggc gaacaaagag ctaaaactta tcagcaacag      2160
     ctttgttgac gttttgattt ggtaagaaat tgtcgatcga atcgaaatac acacacagag      2220
     aagactgcaa aaatgctacc gccgcccgac cctagcgacg ggaacctaga tacaactttg      2280
     tttgccattt atctccgttg aaagcttatc attcgaaatt acaattgata actaaatatt      2340
     atttattcaa ttgtggccct gtaaagggtt gttgtttgaa attgtgcttc aatgcaattt      2400
     aagcgccttc gccacggata cgacgagcca gctggatgta cttcggcatg atggtgacac      2460
     gcttggcgtg gatcgcgtac aggttggtat cctcaaacaa accgaccagt taggccacgc      2520
     tcgcttcctg cagggccatg acggtcgcgc tctggaatcg cagatcggtc ttaaggtgac      2580
     acgggagacc gtgttatttt ccctatcttt tgtctcactc taacaattat catcaaaact      2640
     ttgcagaagc aaatctctag ttttagtgaa ccgattaaac tgaaaattta atgggttgtg      2700
     cactacatat atataatgct agtgatacat ttttcgcatc gatatattga gtggtacttg      2760
     agattaactt ttcaaatgga gagggtgatt aaaacaccgt cccgtggcct taatcaagaa      2820
     gtcctgatcg atttcaccgc cagcaacaac gattgctgtg gcgcacaaga ttcgcaaact      2880
     ctgcacctgt tatgatgtgg agctgggctt gtcagatgat tatggtgata tttgcgctgc      2940
     cgagatcact ataatgaatt gtcgggcact actggtttgc ttctacattt ctccggatac      3000
     cacaatgaag cagaagaagt tctttatggc gcggaacttc ttcgagtatc aaaaggagac      3060
     catgccaatc atcgtgacag gtaacttcaa catcgatttg agcaaagagg agtacacaga      3120
     gttagcggac ttcatggaca agagcctcaa cctcaaactg gcttcggaat ccactaaagc      3180
     aaccaatctt agtggatcat gaatggacct aacgttcaac cggtatattt gtttggagag      3240
     caaaagttac cgctcatgct tcatcttcca tcgaccggtt ctatcggtgt tgaagtgtta      3300
     accgaaccaa ccaaataata acactcaatg tccataatag atcagaattg acatgcaaca      3360
     aatagtttga aaattgatta gattttttgt cagtacctag aaatctttca taagttcgtg      3420
     acggtcctaa atcaggaaat agaagaagct aacgttatcc aacgtcaact tggcggtcgt      3480
     atctcggaaa caacctctta cttttt                                           3506
//
ID   Helitron-N4_BTa repbase;    DNA;    INV; 2430 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Helitron transposon from Bemisia tabaci, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2430
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 892-892 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to the consensus.
XX
SQ   Sequence 2430 BP; 704 A; 530 C; 516 G; 680 T; 0 other;
     tcacaatata taattccgta agcccgatcc tttgggtcaa aattcagcgg ggaccgccgg        60
     gccgatccgt gcgcgggtgg taccggcttg accgtcccgg tcccccgatg gcgggaaaaa       120
     tagagggatc gcgcggcggg ccccgcgccc cttgcgccct ttgaaagatc ggttatcccg       180
     ttcgtcccgt cgggagatgc gcggtttttc gttatttccg ggcgcttttt ttcggtcagc       240
     tgataattcg gctgcccgag gcgtttgtcg tcatggaaat cgccgtgggt gatggattta       300
     cggcggaagc gtacctcaaa attttacgta aattaaccat attcacacaa cgggaagttc       360
     ggagatcaac ttttgaacga gatataaaca aagcgatgac caaagtgcga agccacggat       420
     ctccttttgc gacgttgcag aagcagactc cctgccacac tcaacgtaat ttatttaaaa       480
     ctatcttaat ttttcttctc cttcggcaga atattctgta tatatttcaa gcataaagtt       540
     agcttctttc tcatttaaaa aaattggaaa aaaaaatgag taaacaaaaa gcaggaaaat       600
     ttccgcaatc cttcgatccc aggattgcag gctcgcggtg tgaacaccaa taggcaacga       660
     ggatatccta accctacatt aactcctaac cgtggtaata acgtctttta tgaataaatt       720
     caacctttcc gctcatggaa gaaagaataa tttactaggg ttaaattgca cgccaaacgt       780
     cactatgaca gtctcagtaa tatgaaaata tggcaacatc aatcttgacg ctaagctcaa       840
     gctgtacaca ctttgaattc agttcccgta accaatggac aataaaaacg ttaatagctt       900
     agctagaagt tgatttcagt agttttcgtt gcgcgaatcg tgttctgcat gaaattctgt       960
     tgaagaatca tgtatcagag tgcttaaatt cttaacttgt ttaatggtcc attcaatcta      1020
     aaaaagcgaa catagaaaac ttttctaact tttctcagaa aaaatgtttt atcgggagaa      1080
     acgaggcaac gttggactgc tcatacggcg tcgaaacaca acatgggcct tttaagcccc      1140
     atttttcgat gccgcgatta tcctaacgcg agttcgaata atcgcgccga acacggtgtg      1200
     cggtcggtgt caaactcata tcagcgcctg caagactgta ggaatacttc acgcattgcg      1260
     ccaaacagtg cggtcggcgt caaacgcata ttagcgccta caagactgca tgaatacttc      1320
     tcgcattgca ccaaacgcaa tgcgagagtt atttgcgata actactcgac cacgggtata      1380
     ggcacattgc cgctaactgg attgaaggcg catcacattg tgaagatgac tcgacactcg      1440
     actgagctcc cttccctggc ttgcgcgacg ctaaaatcgc cgcaaaacta ggaccacgcg      1500
     tcatttcttt tgacggtccc tgcccggttt ttgccacaat taaagggtaa ataagtatct      1560
     taattgcaac gattcagcaa ctcggacgat gtttaaacga tgcagcgatt ctgaaacttg      1620
     attcgcgtaa aattaatttt ggtttaataa aaagaaaaca gaacgaacgg aaatatcgcg      1680
     tcgaaatttt ttgtgatttt atttcaaatc attccgggaa tttctcggaa acttctacaa      1740
     aaactgtgtg tagctttttt taaaaaaaat tgattaaaaa taaatgagta gagatttgca      1800
     acgttgcaat cggagataag aacacttttt ttccgcgtgc aggcgtcgat ttttgatttc      1860
     atttacggca ggcgtaacga gataactatt cgaccatggg tgtaggcata ttgccgctag      1920
     ccgaatggaa ggcgcgtcac actgcaaaga tgactccacc gcgttccctt ccctggctcg      1980
     cgcgacgcta aagtcaccgt taaactagga ttacgtgtca tcattcttgc ctctctgctc      2040
     cggtttttac cataagtaaa gggaaaatat gtgtcctcat tgtaacgatt cagaaactcg      2100
     gaggatattt aatttttttg ttttgttaca taaaaagaaa atagaatgaa cgaaaatatc      2160
     gcgtcgaaat tttcgatgct tacatttgag atcatttagg aaaattcgtg gaaaaactgt      2220
     gtgtagcttt ttaaaaacgg tgtacaaaaa taaaacataa aaattggtac acaacgttgc      2280
     aatcagagac gaatatgctt tctttcgcgt gcacccgtcg gcttttgaat ccattcatct      2340
     cttaaataac ttgaacgtgg ttgttctact attttttacg tgtagctttt ctcagtggtt      2400
     ggcggccgcg tagcggccac aggcctctag                                       2430
//
ID   Helitron-N4_DMo repbase;    DNA;    INV; 915 BP.
XX
AC   .
XX
DT   15-OCT-2020 (Rel. 25.10, Created)
DT   15-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-915
RA   Bao W.;
RT   "DNA transposons from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 2846-2846 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 915 BP; 233 A; 163 C; 196 G; 323 T; 0 other;
     tataccctga acccattttc aatgggaaat cagggtataa tggttttgtt gaaatgtatg        60
     taacagggag aaggaggcgt ggcagacccc acaaagtata tatattcttg atcagggtga       120
     cgagctgagt tgatttggcc ctgtccgtct gtctgtccgt ctgtccgtct gtccgtctgt       180
     ccgtctgtcc gtatgtatga acgcgtcgat ttcagaagat ataagagcta gagacttcaa       240
     atttttttta aaatgtccgt aattacagcg cgcatatcaa gtttatcatt aaaaatcgat       300
     aactcatctc gatctttttt tatcgataaa aaaccttatc gaaacccagt tataaaatta       360
     tatcttctac acctttattg ctagagtctc caaattttta atgtatgctt atatgcaatt       420
     tatacaattt cggtttttgt taaaatttac cccccacctc taaattcacc ccctcaccct       480
     cacttttgta aaaagcgtat ttcaaatact agagacttgt gctttggcaa ttacatgcat       540
     attcatgtta taatcataat ctaaaagttt catgaagatc gtacgtccat aaaaaaagtt       600
     attaaacaat taagttctca tagtaagcgc acactgcagc ccatgcgtgt ttatgcgtgg       660
     ttgcttgtat gtgtatgtgt gtgtgtatgt gtgtgtgtgt atgcgtttgt gtctgtatgc       720
     gtgtgtgtgt gtatgtgtgt ctgtatgcgt gtgtgtgtat gtatacctgt gtgtgcgtac       780
     gtgcgtgtgt gtgtgtgtgt gtgtgcgtgt ttcttgtgta agctgaaagt cgcgaaaaag       840
     tattgaaata tctattgctc caagggttca ggggatctcg tagtcgagca gtctcgacta       900
     gagctttctt acttg                                                        915
//
ID   Helitron-N4_DSer repbase;    DNA;    INV; 845 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-845
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1844-1844 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 845 BP; 256 A; 144 C; 142 G; 303 T; 0 other;
     tttataccct tgcagggtat tataatttca gtcagaagtt tgcaacgcag tgaaggaggc        60
     acctccgact atataaagta tatatattct tgatcaggat caacagccga gtcgatctag       120
     ccatgtccgt ctgtccgtct gtccgtctgt ccttctgtcc gtctgtccgt ctgtccgtct       180
     gtccgtctgt ccgtttctac gcaaactagt ctctcagttt tgaagctatc tgaatgaaac       240
     tttgtagtta gccttctata tactctcact cgtatatatg tcggaacggg ccggatcgga       300
     cgactatatc atatagctgc cataggaatg atcgtaaaat ttttacaaaa aaatttttaa       360
     ctttttcagt tttcaataga attggatcaa atttaagata tagccatttt actatactct       420
     acaattttgt gtaaaatttt atgaaaatcg gaccaatata tcatatagct cccataggaa       480
     cgatcgagaa attaatacaa ttaaatttat aactttttca gttttcagct gattttcatc       540
     aaatttaagg tatagctatt ttatattagt cttaaatttt gtgtcaaatt ttatgaaaat       600
     cggacgacta tatcttatag gtgccataca aacgatcgtt tgatgtagag gaaaaatgca       660
     aatctgtgta tgtaaaactg caaatataat atgtataggt gaatgaaatg aaagcaggta       720
     ttactattca ttgtttttta acacaaatat atataattta tattgtatgg attcctattc       780
     atagaagttc tatctgcaag ggtatataaa cttcggcgtg ccgaagttag ctttctttct       840
     tgttt                                                                   845
//
ID   Helitron-N4_DSuz repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   10-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-684
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 104-104 (2022).
XX
DR   [1] (Consensus)
XX
CC   88% identical to consensus.
XX
SQ   Sequence 684 BP; 205 A; 146 C; 140 G; 193 T; 0 other;
     tatacccgtt actcgtagag taaaagggta tactagattc gtcggaaagt atgtaacagg        60
     tagaaggaag cgtttccgac cccataaagt atatatattc ttgatcagga tcactagccg       120
     agtcgatcta gccatgtccg tctgtccgtc tgtccgtatg aacgctgaga tctcggaaac       180
     tataagagct agaatgttgg gactggcatg cagattcttg ggcttcctgc gcagcgcaag       240
     tttgtttcgg cagtgtgcca cgcccactct aacgcccaca aacgactata acactaaaac       300
     ccgtctagcg cccacatttt ttaatatttt gtaaaaattt aaatagagtt tgttcttatt       360
     ataataccca tctacatgcc aaaaattatt gaaatcggac attcattaaa aagttataac       420
     caaataataa tcaatatttt gcaaattcaa tcgagattgc acaccacatg cagcaaatca       480
     gctgttttca ctataggcgc tataggctag ttggcgctat aggctaggtg gcgctataga       540
     agaagaagat aggtggcgct ataggctaga tgtgttagtg aaaaaagcag agcttcttta       600
     agcatatctc catccctctc gcactccctt aagctgagta acgggtatct aatagtcgag       660
     gccatcgact atagcgtttt ctct                                              684
//
ID   Helitron-N4_LMi repbase;    DNA;    INV; 2403 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2403
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3232-3232 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 2403 BP; 843 A; 380 C; 490 G; 690 T; 0 other;
     aaatgaattg ctgttcgtta gtctcgctaa aactcgagaa cggctgaacc gatttggcta        60
     attttagtct tgaaatattc gtgtaagtcc agggaaggtt taaacggtga taaaatatgg       120
     aaaagttgtc cggaaaagag gaaaatcggg aaaaactgaa acagcttttt ccagtgagct       180
     atcaataccg ttcgtccaat tgcgataaaa ttttgtacat ttcatgttga aagcaagagg       240
     aaggttcgca tcaaataaaa atttggaaaa gtcgcccgga aagtaggaaa atttaggaaa       300
     aaccgaaagc gatttttttc tatgaataaa aatcaattgc cacatggttg taagagcatc       360
     acttgagtac ggcttgacag gacaaggttt gtatgaaata aattttttgg aaaatctacc       420
     ggaaaattgg aaaatttgaa aaaactgaaa gtgcgttttt gattgaattc agcactataa       480
     ctgactattc gcacgacgga gaggggtaat tcttttttta tttttttgtt ttgttcatta       540
     tggtcttgga aaagttttca gtaaaaaaaa aaaaaaatag ggacagttaa aaaggaaagt       600
     cgcaaaattc gaaccaagtt cctttttcaa tgtgtttcta aatgtactca acactataag       660
     ttgagaaccg ttcatccgat tgcgataaaa ttttgatcat ttgacgttca acgaaagatg       720
     aacgttctta tgaactaaaa atttgggaaa gttacccgga aaatttgaaa attcgcgaga       780
     aactgaaaga gcttttttca atgggatatc aatatcattc gtctgattgc gataaaattt       840
     tgcatatttg acgttcaaag caagagtaac gttcttatga aataaaaatt tggaaagttt       900
     cccggaaaat tggaaaattc agaaaaaata gaaagagatt tttctatgaa atatcaatac       960
     cattcatctg attgcgataa aattttgcac attcgacgtt caaagcgaga ggaaggtttg      1020
     agtgaagtaa aagtttggaa tagttggcca gaaaatagga aaatttgtgg aaaactgaaa      1080
     gagctctttt ctttgggata tcaatatcat tcgtacgatt gcgataaaat tttgcacatt      1140
     tgacgttcaa agcaagagta catacatatt agcaattgcg aagcattgcc gggtcgacta      1200
     gatgacccgg tgaacttcgt atcacttacc tcttaatata aaccatatta atttaaatca      1260
     tatgtatttt agacccagta gctttataaa ggcatcatca gatagtctaa gtatcggctc      1320
     gatagtgggc ggaaagagtg ggcaaatcac gcacacatgt ccaggataat gttcatgtca      1380
     cattcgtgga agttcaggga aggtttaaac ggtgataaaa tatggaaaaa ttgcgaggaa      1440
     aatttagatt taaaacatgt aaaataatga cttggttgtt gtgttgggtg cgttcagaaa      1500
     tatactttga aagagtaaag ttcgctttac acgatctgaa cccgtatatg aactgtcaaa      1560
     gtcactgtca aaggttacac atacactaaa tatatgcaaa gtgcacactg aatatagtgc      1620
     cactgcaaag tgccttgaaa ctaacgccaa aaacaaaaca aaaaaatttt gtcattctgt      1680
     caccattata gttaccatta ttagtgcacg aaaacattat tatctgatac tgtttacaat      1740
     gccgaggaga aaaagaccta acataggtcg tcgaagtcaa tcaaatgtgc gacgagctac      1800
     ctcacgcgct aaccgcactg atgaccagcg agagactgat aatgataaca gtcgtattgg      1860
     tatggcagat ttgcgttcta gagtgaatta caatgaagta gataggtata gaatggaacg      1920
     agttcgggca catcgatcac aacagcagcg agcacgggaa aatgaaattg atcgattccg      1980
     cagacgcaat gctccagtga acctggaacg aggagcattc tcttacgatc cggaaataga      2040
     ttatagtgcc gacaaatctg taacaattgg ggaaatgtca atcatttgtc aacattgtaa      2100
     agctttaaaa tacagcggtg aatctgcagg attatgttgt gctggtggta aagtaaaatt      2160
     gccacaattg gtcccaccac ctgatccatt acactcatta gtttttggga tggaaaatga      2220
     ctctaaacac ttcttggcaa catccaaaaa tataacaatt gcttccaaat gacgtcgttt      2280
     ggtgcaacgc atattgtaca gaacagtttc atgcccactt tcaagtaata cttaatattg      2340
     ttttaataaa attatggttt atattaagag gtaagtgata cgaagttcac cgggtcatct      2400
     agt                                                                    2403
//
ID   Helitron-N4_PPo repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-132
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2742-2742 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 132 BP; 47 A; 21 C; 18 G; 46 T; 0 other;
     tatcatacta atattataaa gaggaaagat ttgtttgttt gtatgaatag gctccaaaac        60
     tactgaaccg attttaaaaa ttctttcacc atttgaaagc tacattatcc ccgagtaaca       120
     taggctatat tt                                                           132
//
ID   Helitron-N5B_LMi repbase;    DNA;    INV; 1127 BP.
XX
AC   .
XX
DT   24-JUL-2014 (Rel. 19.12, Created)
DT   24-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N5B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1127
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3201-3201 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1127 BP; 353 A; 181 C; 236 G; 357 T; 0 other;
     tctatatcta taaatgtgaa tgtctgttcg gtgtacgttt atcacgtctg aaccacaaga        60
     cataaagagc taaaaatttg tacagttact aatgtctacc cggggaaggc tttaggcacg       120
     gttttatggc gatcggatag ctatttatct atatatatta atgtgaatgt ctgttcggtg       180
     tacgcttatc acgtccgaac gacaagacgc agagacttaa atatttgtac agttactaat       240
     ttatacctga ggaaggtttt aggcacggtt ttatagcgat ctgatagata tttagtaatt       300
     tgaagaatat aacgcgaaat gcggaacaat aattactctt tgaaaattat atttactctt       360
     tgaaaatggt tttattggtt gcattgttgc ttgagggttg ataatgataa aagggtggag       420
     tatattggga tggaaagtta tcggtgtata taaaattcta cgtgtgtgtg tgttaatatt       480
     tcgctctgca gcgaaaacta cagaacgcaa acgaatggtc tgtgtgtaat tgttgtccga       540
     agtctcccgt tgtacaccat agcagttcca tgccgatagc tataaggggg tggaagatat       600
     ggtggttgaa agtcgtcaaa ttataaaaaa aatcggactg aaggccagcg atgacgtttg       660
     cgactctata gcaaggaggt tacatacagc gaaacgtgat gccacagacc atatctttgg       720
     tctatgcgtg ctacaatgtc ttcagctctt tctctgtaag gataagcata cgaataagga       780
     aatataagaa taaataaata aagcagtaaa aaagaaattt cttttaatac atctctttaa       840
     aaaaatcgat ttgacgtttc gcgcattaca tcaagtgatc gatctgtgat attattacaa       900
     tcattattgt tgaatttcgt gattggattc ttcgaaacga gtgcattttt acgtgtgatt       960
     tgatctacac tacttacttt cctgataaac ggtaagtgca tagacttctg caatctgata      1020
     ggaatatttt tcagttcctt caaaaccagt ctcatagcac actactgaaa gatagcttat      1080
     ctatcataat caaccaacac gcgagcggag ccgcgggttt aagctag                    1127
//
ID   Helitron-N5_AAe repbase;    DNA;    INV; 5983 BP.
XX
AC   .
XX
DT   09-APR-2019 (Rel. 26.01, Created)
DT   09-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Helitron family from Aedes aegypti, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5983
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5983
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 148-148 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to the consensus. FEILAI_B insertion is masked
CC   out.
XX
SQ   Sequence 5983 BP; 1799 A; 1234 C; 1233 G; 1714 T; 3 other;
     tttgacgtag aagtacgtct ttcttctcta tacaggagtg aaattggaat ttcaaaacca        60
     agagcgttac gctggcatga aatattttaa acgttcataa cttttcgctg gcttaacgaa       120
     atttcttgat tagcacctca atcgaaagat aagacatcaa agcttcatgt cgtttactta       180
     ctgaatccca catacctgtc caaatagttt aataactgtt ttaaaataga acgttgattt       240
     caagcaaatc tataaatagg ggtggctaga gaaaatttga cgtcatttgc ttttcactct       300
     ccgattggct cgcatctcag caggcgacag atcggcttgc tctgaccggg cgtgcttctc       360
     aggcacagac atcgacagcg aaggacgccc ccgtttgtct tgcttcgctc aaatcaaact       420
     gtcgagcgag cgagagaaga tgccgtccga agctaaagcc atcaccgctg ccgccgccta       480
     gaagaagaag aggaagcagt ccacaggtga acttgcggtc gaactgtgaa cacggtcggg       540
     cgagtcattc tcgctttgtg gttcaccgct tgtttgcgtt cacccagcca tcgtcatcgc       600
     cgccgcaaat ttcatcggcc gaggagctgt tgacccgcgc ttcaaaattt cgactcgtga       660
     tgaaatcatc attggtggtc aagaagcaat cccgttagga gcaaatacca gaagccccct       720
     gagttttgct ggtccgagca gtgttattta tccgtaacaa catcgaagct aacaaagcca       780
     tcggttcttt tcagagccat caaatttgtg gaaaagagtt aaaagagaaa tatttccgac       840
     tttatttata acttctaata ttcctaaatc aatttcacgg cttcatacaa aatttcattt       900
     gtcatgaata atttatgact caaccatttg agattgtact cgcggacgct gctgcagtgc       960
     cgtcggggtg agtgctcaac atttcacaac gattgtaaaa tagagtggct tttccaacag      1020
     cgccttttat gttccatatt ttatgggaac actttgatta ggaaaattat cccgtgtaac      1080
     aaaattgcga catatttaga atgcttttga taagacattc tcattgaaca attgtaataa      1140
     ttttggcacc catggatccg aaatttaccg tcataataaa gaaaactatt gattatcaat      1200
     agctcgtatt gaatatttag ggaatgccaa tcattccaac aattcatgtt cgaccaattt      1260
     ctcacgtatt agtattctcc acaattttca agtaattcca agcccaacac attattagca      1320
     catacccatt tcccagattg gtcgatcaga aagcgaagag cacaaaaggg aggagcatca      1380
     tctgctattc caaggttata aaacatgctg ccttcgttgg attcagtttc attccatttc      1440
     cgctttcgag ctggtaagag ctcctccgaa cttgcttagc gagaagtacc tcgctgctag      1500
     aagcctgctg agctgttaat ccagaatctg gtttgtgaaa tcgctcaaga tttcaaaatt      1560
     gagctacgtt tccagatttc aactaaatcc ctgtgatccg ctaccctgtt gctgttgtgc      1620
     acccatgaaa tatttagctg gtttgtcgaa taaactgaga acttattcac atgttttttc      1680
     tcagcgaaga atcacaccat caacgaaaat agcgcgaaag caataaccaa tcgcgtgcga      1740
     gtagcgaacg gagtgacgaa acaaccaagc gagaacccca ccactcgcca tcggtgaacg      1800
     gagctcgagc aaataaaacc actggttgtt ctgctcccag ctcattcaca aatcgaacgg      1860
     cataacgaac ggatcaagca gcggagcagc aaagaagagc gcgtgaaagc cacagcagtg      1920
     tgcgagtagc gaacggaacc agagagcaac gaagcgaaag caacaactga aaatcattca      1980
     gtggacggat tagtagtcag cgccaaccgg cgacctgttg gaaactaacg ccagcgaaat      2040
     atacaccatc tgcctctcct taccattcat attcttgtac ttgatgaatt caatgaaatg      2100
     gtttggtttg gcgatggagc aaagagttat ttaggatgat tttacttgac aaagagttgt      2160
     tgataaatat tccaatcaaa aagagttgtt ttgaaaaagt tcacttttag cagaattttc      2220
     ctcggaaaat ttctgcttta ccaaagagtt gttaatgaaa ttcctgcagc aaagggtcga      2280
     gtttctcccc acgaatattt ccggccagga ccagtcatgg aggacaatcc atcccgagca      2340
     tcacggcccc cgcttccaaa attctcgagt acggaaattg gaaaatgtat tgaaactgcg      2400
     acagatttca aatactgttc aataaactgt ttcttgacca attgtaatga gcaactattg      2460
     atctgaattg atttttctac atgttgtcta ttgcgttaat ctgagaaata ggctatatga      2520
     aattgatgtc ttggcaaggg acgtacaaga tgagcattat gctgttattg catcccgacg      2580
     gcactgcagc agcgttctcg gaccatcctc aaattgtcgt attgtcgatt attcgtgata      2640
     aatcagatat tgcgatgcta cgagatgaat taagagacta tagctagtat gtggtaagca      2700
     cattaagaaa tattactagc tatactgtgt ttatcacgag aagttcttac tagctcgaaa      2760
     gtgtaaatga aatgaaccga atcctgttgt tgttacagag ggattttaat ccgaaggtca      2820
     ttcgtccctt aaatgaaccg aatctgtcga agatagtatg ttttacataa tttgaattgc      2880
     agacgatgct cctccctttc gtattcttcg ccttcttctg attgaccaat ctaggataag      2940
     atacatgaag ttgatgtctt ggttagggat ttacatatct tggaaaattc acatgcgcgt      3000
     tcgtatggac agtaaaaata tcaacattat tttaacagct tacaataaat taaaatcacg      3060
     catgttttgg tttcgtgcaa attttaaata tttctgatca atgttcaatg tgttctgatt      3120
     tatatactat gacatttgca atagactaac mtgtagaaaa atttcagatc aatagttgct      3180
     cattacaatt ggtcaggaaa ccagtttgtt gaacagtatt taaaatctgt cgcaatttta      3240
     atacattttc caattcccat actcgttttg gatttaggaa gtgttccccc attatatgat      3300
     aaatcaacga tgctgttgga aataccatac aatgccgagt agtatgatgt tattacggtc      3360
     cgacggcgct gcagtggtaa attctaaaat tcttgtaatt atgtggggta aattatgtga      3420
     accaaattat agtataccgc gatatttata tcattataga taaatcagta aatatcatcc      3480
     aataaaccct tttatgaacg tatgttggcc ctgaaaaggg ccgattgagc ttggatgctg      3540
     tgaccacgag tcgaaatcta gaagcgcgga tcggtcaacc tagaaatctt gagcgatttc      3600
     acaaaccaga tgctggattg gcagcttgaa gattaacagc tcagcagatt tctagcagcg      3660
     aggtacttct cgctgagcaa gttcggagga gctcttacca gctcgaaagc ggaattggaa      3720
     tgaaactgaa tccgacgaag gaagcatgtt ttatagcctc agaatagcag atgatgctcc      3780
     tcccttttgt gctcttcgct ttctgatcga ccaatctggg aaatgggtat gtgccaataa      3840
     tgtgttgggc ttggaattac ttgaaaattg cggagaatgc taatgcgtga gaaattggtc      3900
     gaacatgaat tgctggaagg gttgacatta actaaatatt caatacgagc tattgataat      3960
     caatagtttt ctttattatg agggtaaatt tctgatccat gggtgccaaa attattacaa      4020
     ttgttcaatg agaatgtctt ttcaaaagca ttctaaatat gtcgcaattt tgttacatgt      4080
     gataattttg ctaatcaaag tgttccctta aaatatggaa catcaaagac gctgttggaa      4140
     atgccactct attttacaat tgttgtggaa tgttgagcac tcaccccgac ggcactgcag      4200
     cagcgtccgc gattacagtc tcaaaatgtt taktcataaa ttattcatga caaatgaaat      4260
     tttgtatgaa gctgtgaaat tgatttagga atattagaag tcatatataa agtcggaaat      4320
     atttctcttt taactctttt ccactaattt gatggccctg aaaagggccg atggctttgt      4380
     tagctttgat gctcgtacag ataaataaca ctgcgggatg ttatcagttg attgccatgg      4440
     tcaaacgggg aatcctcaac tcaaatgtat aaatttgagc aagttatttg cttatacgac      4500
     gaaccgaaag gttcgtggcg tggatggcgc acaacagtaa caggtagtgg atcaccgggc      4560
     ttttgtcgaa atctgacgat ggcggcgatg acgatggctg ggtgaacgca aacaagcggt      4620
     gaagcacaaa gcgagaatga cttgcccgac cgcgttcaca gttcgaccgc aaattttcct      4680
     gtggactgct tcctcttctt cttcttctag gcggcggcag cggtgatgac tttggcttcg      4740
     gacggcatct tctctcgctc gctcgacagt ttgatttgag cgaagcaaga caaacgggga      4800
     ggtccttcgc tatcgatgtc tgtgcctgag aagcacgccc ggtcagagcc agacgatctg      4860
     ttgcctgctg ggatgcgatc caagcggaga atggaaagca aatgacgtca aattttctct      4920
     agcaccccta tttataaatt tgcttgaaat caacgttctc ttttaaaaca gtaattaaac      4980
     tatttggaca ggtatgtggg attcagtaag taaacgacat gaccctttga tgtcttgtct      5040
     ttcaattgag gtgccattca aggaatttcg ttaaaccagc taacagttat aagagttcaa      5100
     aatatttcat gccamcgtaa ggctcttggt tttgaaattc caatttcact cctgtataga      5160
     gaatttttat tttactttca aactgtgcgg cataatcaaa tgcaaacgca ttcagttccc      5220
     gatggttagt gcctgtgctt ttactgttca taagtcgcaa ggtggaactt tccccgaggt      5280
     cgtgtacgac tatgacaaaa gccaggatca gcaattggta tatgttggtt tgtcgcgggt      5340
     tacttcactg caaggactat ttttgacaaa ctcttaattt tttcaagttc catcacgcca      5400
     aaggcagcaa ttctcccaag agggttgact tgaggaatga gctgcagcgc ttaggcaatc      5460
     atcgattagt gacgctttga gacgaactgc gtgaaatact ggatcatagc gtccaagccg      5520
     gcatattgat gagtatcaat gtacagagcc taaatgctca tgcaatggat attgctacag      5580
     accaaagcac tggaccgatt ctatcgattc ttacgatcga agcacccgag ctatcaaaca      5640
     tctaatctac tggaggagtt tggcgaacta cagctggagc cagaaaccga tcacccaacc      5700
     aagcaacaca aggaagcaac gaccaaacaa acaaattcaa tcatctggca ttattcctgg      5760
     aacaccaaac actggttctc ggaaccacag aacgacaaat ggttcttttc aggactacca      5820
     aaatgagtcc aaaaagagtt aacttctgaa aacttcatcc gatcaataac aacacaaaac      5880
     tagtacactt acaaattcat acacatgaca aatcaaatta ttaatcatcg tagttctacg      5940
     tcaaccccgc ggtaatgtaa tagacattac ccaccccaaa ttt                        5983
//
ID   Helitron-N5_DSuz repbase;    DNA;    INV; 2445 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2445
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 105-105 (2022).
XX
DR   [1] (Consensus)
XX
CC   90% identical to consensus.
XX
SQ   Sequence 2445 BP; 767 A; 490 C; 467 G; 698 T; 23 other;
     tctactatat aaaaataagt cgggttttcc ttcctgacgc tgtaactcca gaacgcacga        60
     accgatttcc acggttttgc attcgttgga aaggtctcgg gctccgtgag gcttatagca       120
     aagaaaattc aggaaaaatt tcaacagaaa agcgggaaaa tcttttttta catacagcgt       180
     catctctgat acatagcatg aactacaaac caagatttta agtagatggc gccggtgcga       240
     cgagctgaga gaccaccatc gacaacattg actagcttct ttgcaatgtg tgaagcagat       300
     ccattcgcag cgacgctgat gaatcaatca acaaagaaat tccaacgtcg caaacaagga       360
     accccagttc cagattggcc acaggtgttt tccactgatg cactaggtcg catgtatact       420
     gttcatccta gaaatgatga atgtttttat ttgcgactgc tgttggtaaa tgtacgtgga       480
     ccaaaatcat ttgcgcattt gaaaactgtg aatggccacc aatgccaaac atatcgagaa       540
     gcatgtcaac tattgggttt gctggagaac ggttctcatt gggatttaac acttgcggat       600
     tcagttgttt catcaaatgc gtaccaaata cgaacgctgt tcgcaatkat catcaccaca       660
     tgttttcctt cacaacsaat tcagttatgg aacgaataca aagacgacat atgtgaagat       720
     akcttgcatc gcttgcgcat tcaaacgaat aatcstgaca tccaaataac cgtgaaatct       780
     acaatgaagg attgattctg attgacwatg cttgactatt gcaaaaagcc atcgaatgca       840
     ttcaaccaag aattmaatmg agagctgcag tacaatgttg atgcatgtgc cgttgctgaa       900
     tgaacagcaa aagcaagtat acgaaacatt aatgcaagcg gckkacaata atactggtgg       960
     tctattcttc ctgkacgcac ctggaggaac agkgaaaaat ttgtcatwtc attgattttg      1020
     gccactwttc gatcaagatg tgacatagct ttggcgttag catcatctgg aactgckgcg      1080
     mctcttctag atggcggtcg tactkcacat tctgcgctta agttgccact caawttaaac      1140
     agaattgata ctccaacgtk caatatttcc cgatccagtk caatgggaaa attgttgatg      1200
     caatgcaakc tcwttgtttg ggatsagtgc acaatggcac ataagaaatc acttgaagca      1260
     cttaacttca cactgaagga tcttccccgt ggaacgcctg cagatgaatt gactgcttgc      1320
     ctgaaggcat cacctttatg gaataacgta aaaacattat cgctaaccac taatatgaga      1380
     gttcaacttc aaaatgatca aagtgcagca caattttcca aacaattgtt agctgttgga      1440
     aatggaaaag tcccagttga tgcgacatct ggattaatta ctcttaccaa cgacttttgc      1500
     cgatttgtag actctcaatt agctcttatt gaaaatgttt tcccaaacat tagtgagaat      1560
     tatcagaatt atgcttggtt aagtcaacga gcaattcttg ccgcaaagaa taatgatgta      1620
     cacgcactga atttcaccat tcaatcaaaa attgctggcg atttggtgac atacaaatcc      1680
     gttgattcca taacaaatcc cgatgatgta gtaaattatc caacggagtt tttgaactct      1740
     ctggagttac caggatttcc accacataac ttgcaactca aagttggtac agttattatg      1800
     atattgcgta atttgaatcc accgcgactt tgcaacggta ctcgactttc ggtaaaaaga      1860
     cttatgccga atttgattga ggcaatcatt attaacggaa agtacgcagg tgaaaatgta      1920
     tgtattctcg aataccaatg attccgactg atcttccgtt tgacttcaaa cgattgcaat      1980
     ttccagttcg ccttgcgttc gcaatgacaa ttaacaagtc gcaaggccaa tcgcttagtg      2040
     tttgcgggat aaatttagaa aatcattgtt tttcacatgg gcagttatac gttgcgtgtt      2100
     cacgagttgg gaaaccatcc gctttgtttg tgttaacgtc agaccaaaaa acaaaaaatg      2160
     tggtttacca aagagcactt caatgaaacg gataatttgc ggacacgtga aacgcttcga      2220
     ttcagtattt actttggatt cactttcatt tacttagaga agttcaacta aataacactt      2280
     catttttgta atcgaaatga attcattact gttgtgaaat gaaataaaat ttttmctttt      2340
     caaatataaa acaaaaaaaa ttttcttcat cttttaatca ccaaacgaaa tgttacataa      2400
     aacgaagcca tctggtggcg aaacggagtt cgccgggttt gctag                      2445
//
ID   Helitron-N5_LMi repbase;    DNA;    INV; 1420 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1420
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3233-3233 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1420 BP; 453 A; 239 C; 272 G; 456 T; 0 other;
     taaatgtgaa tgtctgttcg gtgtacgttt atcacgtctg aaccacaaga cataaagagc        60
     taaaaatttg tacagttact aatgtctacc cggggaaggc tttaggcacg gttttatggc       120
     gatcggatag ctatttatct atatatatat aatgtgaatg tctgttcggt gtacgcttat       180
     cacgtccgaa cgacaagacg cagagactta aatatttgta cagttactaa tttatacctg       240
     aggaaggttt taggcacggt tttatagcga tctgatagat atttagtaat ttgaagaata       300
     taacgcgaaa tgcggaacaa taattactct ttgaaaatta tatttactct ttgaaaatgg       360
     ttttattggt tgcattgttg cttgagggtt gataatgata aaagggtgga gtatattggg       420
     atggaaagtt atcggtgtat ataaaattct acgtgtgtgt gtgtgtgtta atatttcgct       480
     ctgcagcgaa aactacagaa cgcaaacgaa tggtctgtgt gtaattgttg tccgaagtct       540
     cccgttgtac accatagcag ttccatgccg atagctataa gggggtggaa gatatggtgg       600
     ttgaaagtcg tcaaattata aaaaaattcg gactgaaggc cagcgatgac gtttgcgact       660
     ctatagcaag gaggttacat acagcgaaac gtgatgccac agaccatatc tttggtctat       720
     gcgtgctaca atgtcttcag ctctttctct gtaaggaaat ataagaataa ataaataaag       780
     cagtaaaaaa gaaatttctt ttaatacatc tctttaaaaa aatcgatttg acgtttcgcg       840
     cattacatca agtgatcgat ctgtgatatt attacaatca ttattgttga atttccttta       900
     atcccttcag atatgccatt tcagttcaaa agacttcagt ttccagttcg tctagctttt       960
     gccatgacaa ttaacaaagc tcaaggacaa tcattaaacg tcgcaggaat ccatttacag      1020
     ccctcatgtt tttcacatgg tcaattatac gtcgcttgct caagggtggg caacccaaaa      1080
     agtctctaca tttacgctcc aaacaatact acaaataacg tagtttacta gaatgcccta      1140
     aaatgaaatt aaaatgaatt tggacattac tctcaccata cgtgttgaga tattgcaaca      1200
     caggctataa ggaataatgt atgtattatt tattgtaaat cattaagcac ttcacataat      1260
     tttatttttt tattcgaatg ttgattaaaa atgtttgttt ctaaaaaagg tattgtattt      1320
     catttcatcc ttcaaaacca gtctcatagc acactactga aagatagctt atctatcata      1380
     atcaaccaac acgcgagcgg agccgcgggt ttaagctagt                            1420
//
ID   Helitron-N5_PPo repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-274
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2743-2743 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Termini are A/TC..CTAG/T.
XX
SQ   Sequence 274 BP; 73 A; 49 C; 65 G; 87 T; 0 other;
     tctatacata taataaaatt ggagtgtctg tttgtaatat caaaagaaaa tccagatttc        60
     gggaagatga tgtatttgcg ttgctgataa cgaaaatcgc atttaatttt tttttgtctg       120
     tctgtccgca agccgcgttt gttccgggta atctccgaaa cggctgggcc gatttcgacc       180
     ggactttcac tgaagggtag ctgacataga cgggcatatt ataggctact ttttatctta       240
     atattgcgtg gacgaagtcg cgggcaacag ctag                                   274
//
ID   Helitron-N5_RPr repbase;    DNA;    INV; 893 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   22-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-893
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3241-3241 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 893 BP; 310 A; 143 C; 160 G; 279 T; 1 other;
     tctatatata taaaaatgaa tgtgtgtctg tttgtttgta ctcgatagat tcaaaaacca        60
     tacatccaat cgccgtgaaa atttgggaaa ttattaggta tatccccggg aaggtttttg       120
     caaatttttt ttaaaatcag agttggggct ctaggtgctc ccgaacaaat atcccaaaaa       180
     tatcaaaata acatttaatt agtaatattt gttgaaagtg taaccatgaa aaccatgaaa       240
     aacagttttt tgcaattatt aatacgagaa taaattatac cgaagatggt ggaaaatcca       300
     ttaaactaaa agtactcaac aatactattg acgttgataa tcgttgggta gtaccatatt       360
     ctccattact actaaaaacg tataacgcac acataaatgt tgggtactgc aattcagtga       420
     aagctataaa atatatttgc aaatatgtga acaaaggaag cgatatggca gtgtttggag       480
     tggaaaatac aactgcatct aacgatgaag tcacccaata tcaactggga cgcttcataa       540
     gtagcaatga ggctgtatgg cgtattacct gtatatcatt ttccattcat gagcgatatc       600
     caacggttgt tcatttagca gtacatcttg aaaatggaca gcgtgtgtat tttacatcag       660
     aaaatgtacg tgcaagagca atgtcaccac cgccaacaac attaactgaa tttttcacat       720
     tatgtagaaa tgmtaccttt gcaaggacac tactgtactc tgaagtaggg ataattttat       780
     tgttaatttt catttcgatg tattgtatac atttggtcat taataaatta tgtttgaggt       840
     atcaaaactg cctttttgtt caaacacagc aacgtgtgaa cgggtacagc tag              893
//
ID   Helitron-N6B_PPo repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N6_PPo;
KW   Helitron-N6B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-405
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2744-2744 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Termini are TA/TC..CTCG/TA.
XX
SQ   Sequence 405 BP; 114 A; 71 C; 91 G; 129 T; 0 other;
     tcttacttct tactaatatt ataaatgcga aagtttaggg atggatggat ggatggatgt        60
     ttgttagcgt ttgtagccta aacggctgaa cggatctcca tgaaatttgg cacaggttta       120
     gagcatagtc tggaagaaca cataggctac tttttatccc gggaatagtt acggttcccg       180
     tgggattcat taatttagtt ttttaatgtt cactcgatca ttctgcaacg gttcaacata       240
     tcttattgaa atttggcaca gatataaaac aaagtctgga gtacacatga gataagcttc       300
     atcccagaga aatgtccggt tcccgaggga tacgtagctt tttgtaattt atatagttcg       360
     tatgttttct aataccacgc ggacgaagtc gcgggcaaca gctcg                       405
//
ID   Helitron-N6_LMi repbase;    DNA;    INV; 905 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-905
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3234-3234 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 905 BP; 292 A; 164 C; 137 G; 311 T; 1 other;
     tattatttct catcggtgtt ttttgtgggt acgccatatc tcccgtatta cttatccaaa        60
     attaatgatt gaggtatcat tttcaaggtt tcgttctcca ctaatgacga aaaatacaca       120
     gatagtttaa agttattgtt ttcacaaaaa aactttattt tgaaaaaaat tgtactgttc       180
     gtacaatcta agttgatacc cggcgaacga tcgtaaatgg gacatgtatt tacggttgct       240
     cccatcagcc accgcgcgtg taaattatgt taattagaaa tcttaacgct aatcagggat       300
     taattaatgg tgcaagatta gtggtgactc acttaggcga gtacatcatc actgctaaat       360
     tcattgacts cgataaaact gtgctaatac cccgcattaa cctcacacct tctgatccaa       420
     ccatgccttt ccaaatgata agaagacaat tcccaataaa agtagccttc gctatgacca       480
     taaataaagc acaaggtcag acgcttcaaa gggcaggatt atatttacca gaacctgttt       540
     tttcgcatgg acagttatac gtggcttttt cacgagttcg ctcattcagt gatatttatg       600
     tttgtgctaa agacacatta taactactaa cattgttttc aaagaagttt tgtaaaataa       660
     acaagttttc aaaaaataaa ataaacatga aaaagtcaat atctgatttt ttatatgttt       720
     cacaattaat catattgtat ttaattatat aaattttctt acaatgagac taatatttgt       780
     tactactatt caaagtttat tatcttttat acatatgtac ttgcatctgc cttttctcca       840
     ttactatctt acctatctgt gactgatcag gatagagtgc gaattattcg cacgggtcaa       900
     ctagt                                                                   905
//
ID   Helitron-N6_PPo repbase;    DNA;    INV; 190 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N6_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-190
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2745-2745 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Termini are CT/TC..CTAG/TA. More
CC   than 15000 copies are >90% identical to the consensus.
XX
SQ   Sequence 190 BP; 55 A; 25 C; 50 G; 60 T; 0 other;
     tcatactaat attataaatg cgaaagttta gatggatgga tggatgtttg ttagagtttg        60
     tagcctaaac ggctgaacgg atttcgatga aatttggtat agatgtagag gatagtctgg       120
     aagaacacat aggctactca cttttgtttt tttttaattc cacgcggacg gagtcgcggg       180
     cgaaagctag                                                              190
//
ID   Helitron-N6_PXu repbase;    DNA;    INV; 196 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version 1)
XX
DE   Helitron from Papilio xuthus: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N3_PXu; Helitron-N6_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-196
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2721-2721 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Termini are TA/TC..CTAG/T, ~89%
CC   identical to Helitron-N6_PPo.
XX
SQ   Sequence 196 BP; 56 A; 30 C; 49 G; 61 T; 0 other;
     tcttacttct tactaatatt ataaatgcga atgtttagat ggatggatgg atgtttgttt        60
     gaaggtatct ccagaacggc tgaacggatc tcgatgaaat ttggcataga tgtagaacat       120
     agtctggaag aacacatagg ctactaatta agtttttttt taattccgcg cggacggagt       180
     cgcgggcgac agctag                                                       196
//
ID   Helitron-N6_RPr repbase;    DNA;    INV; 1162 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Helitron DNA transposons: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1162
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3242-3242 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined.
XX
SQ   Sequence 1162 BP; 393 A; 207 C; 213 G; 349 T; 0 other;
     tgacgtgaat acgtctttaa atttgaatca tatggtggca atccaaaaaa tctaatgata        60
     acaaaatcgg gggatacagt ttggcattat agtttcgaat ctatcgtcta catccaaaat       120
     taaattagac cactggatag ctaaaggatc aaagaattca ttacgataag cgaggactgt       180
     gacgcatcgc gcgcggtgga gggggaagcg ccgccatttt gagataattt tgctgcgtat       240
     cgagatttgc aattagtata acttttgact cggagaagct acgatgttcg tttaagtttt       300
     aatcgtcagc tgtcgtcaca atctatcgat tgtatataaa acattagtgt aaaatagtga       360
     cagtgaatat aataaaggtg ttagaataaa aaaatattat caaaaatata taatgtcggc       420
     ctatacgcgt cgaaaagcca aaaccaaata cagagatcgt atacggttgg aaagggcttc       480
     tcaagaacaa tcgaatggta aaagtcgcaa agccggtgga gtcgccatat atcgcaacat       540
     caatagcttc actgattgta atagagttaa cattgacatt tcggaaattt atttggaaat       600
     gaaagacgca aaagctggtg atgtctgtct agtaaacgaa aaaggccaat ggcatcttca       660
     aattcgtact cgggtgtgtg tatatccatc cgggcacagc gttagcagaa attaaactct       720
     ttatgttacg atcgttgtta aaatattcca aaaacatctc taaaattata cccgattacg       780
     agcctgatct tactacacca attatgatag ttggagactt taatgttgat gtctcacaaa       840
     accgctcatt gcccgacttc atgctcagcg agttcaattt gtcttatatt gaaacttctc       900
     caacaacgtt aggtaatacc tatattgatt taacgtttac cagaaatctc gatgtatctt       960
     gtatgccatt tgtgtcgtac ttttcgtatc acagacctat aattaataaa gttatattgt      1020
     aacacagtaa ttatttgttt ccttgatttc atcctaaata cataaataaa aatattttat      1080
     ataaaaaata taacccgtta cgtaaacgta ttcacgtaca acacacggcc gtgtccatga      1140
     cacagccaca gtagagcttt tt                                               1162
//
ID   Helitron-N7_LMi repbase;    DNA;    INV; 1457 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1457
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3235-3235 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1457 BP; 462 A; 298 C; 234 G; 463 T; 0 other;
     tctatacatc ttataaaata ggctgtatgt gtgtgtgttg ttgtgtgtat gtatgttcca        60
     catctcctcc taaactactg gaccgatttc aaccaaactt ggtacacatg atccttacta       120
     tcaggcaaca atcgctgtcg gggtaagaac cacctacgac acatacgtaa ggagatatga       180
     cgtcataaac aatgacagtc gtgaaaaacg gccgcatcat gcgataatat tctacatctg       240
     ctcctaaact aatggaccga tttcaaccaa atttggtaca aatattcttt aaggtcagga       300
     atcatttgct atggttgcaa aaaccaccta cgatacatag ttcatacgat atcacgtcat       360
     aaacaatgaa aactgcccca tcttggcgcg tgattttatt cgtcaactat ttgacaatga       420
     gatcatgagt tcatgatgta tatctacggc atttggcatg acgttacaag ttattacttc       480
     tacactgtaa attgtattcg cgagacaatt cacagacagt acacatacat accactgaat       540
     gttccttcga tactatatca cagttcgaca tatagttcat gagatatgaa gtcataaaca       600
     atttggttca tgaaaaaccg catcatcacg catgaggttt cgatttatta cgtctttact       660
     gctaacacca ttcacgacat attttgcaga cattaggcac atataccact gaatgtacct       720
     tcgaatttac atcatagtac gacacatatt tcaggagata tgacgtcata aacaatgaaa       780
     tttccgaata actgctacat catgcgctat ttttccacat ctcctcctaa aataatggac       840
     cgatttcaac taaacttggt acacatattg cttactatca gacaacaatc gctgtggggt       900
     taaaaactac ctacgacaca tagttcagga gatatgacgt cgtgaacaat gagtcagaaa       960
     aaaacttccc acgaataccc cttattccga cagatctacc ttttaacttc aagagactac      1020
     agtttccagt gagacttgca ttttctatta cgattaacaa aatcacaggg acaatatgtt      1080
     aaataccgcg gagtggattt gacatctcca tgtttctcac atggacaact ctatgtcgcc      1140
     tgctcaaggg tgggctcacc aaagaattta ttcatactag ctcctggaca agtaacaaga      1200
     aatattgttt atagtcaagt tttgaattaa attaatgtta tacatcattt gtattttatt      1260
     actatttttc tttctttgga tactgcactt ataattttgt acattatgca tatttctttg      1320
     ttttactgtt gcacaatttc taagctgttt tcatgaatac atgaagatga aatcttttcc      1380
     ggatttttat tttcgtttct aatataacac tggaaaaatg catatatacc cggggaatac      1440
     cgggtttagc agctagt                                                     1457
//
ID   Helitron-N7_PPo repbase;    DNA;    INV; 408 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio polytes: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitron-N7_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-408
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2746-2746 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Termini are AA/TC..CTCG/TT.
XX
SQ   Sequence 408 BP; 108 A; 76 C; 104 G; 120 T; 0 other;
     tctatacata taataaaatt ggagtgtctg tttgtaatat caaaagaaaa attccagatt        60
     tcgggaagat gatgtatttg cgttgctgat aacgaaaatc gcatttaaaa attttttgtc       120
     tgtctgtccg caagccgcgt ttgttccggg taatctccga aacggctggg ccgatttcga       180
     ccggactttc actggagggt agctgacata gacgggcata ttataggcta ctttttttta       240
     attccgcgct gtcaaaatgg cgaccggacc gctatctctg gaacgggtgg accgatttgg       300
     acgggacttt gactggaagg tagctggtaa aaagtagatg cacgcgggaa tgttatagac       360
     gacttttttt tataatccac gctaacgaag tttgcgggcg acagctcg                    408
//
ID   Helitron-N7_PXu repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Helitron from Papilio xuthus: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; nonautonomous;
KW   Helitron-N7_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-160
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 2722-2722 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. Termini are TA/TC..CTAG/TA,.
XX
SQ   Sequence 160 BP; 40 A; 38 C; 34 G; 48 T; 0 other;
     tcttatatat aaaattctcg tgtcacaatt ttcgttccca tactcctccg aaacggcttg        60
     accgattctc atgaaatttt gtgagcatat tgagtaggtc tgagaatcgg ccaacatcta       120
     tttttaatcc cgcgcggacg gagtcgcggg cgacagctag                             160
//
ID   Helitron-N8B_LMi repbase;    DNA;    INV; 1112 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.12, Created)
DT   06-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N8B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1112
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3236-3236 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1112 BP; 388 A; 208 C; 189 G; 326 T; 1 other;
     tctaatatat aaagcagagt gtccgtatgt ttgtgtgtac gtattgcata caaatctaca        60
     gttttgttcc aatctttatg aaattttgca cacgtaagct tcaatccatg aggacggtcg       120
     ccgtaagtgt aaggatcacg tacaacacat agttcacgag atatgacgtc ataaacaatg       180
     agatgcgaga aaaactgctg cattatgcga caatgttgcw cattttctcc taaaccactg       240
     gaccgatttc aaccaaattt ggtacacata ttccttaccg tgaggtaaca attgctgtag       300
     gggtaagaac cacatacgac acatggttca ggagatataa cgtcataaac aataggagtc       360
     gcaagaaact gccacataat gcgacgagac tttatgaata cactatatga gaacgagagt       420
     acttagcgac ttgcaacaaa ctttaaacat aatttcaaac ctttattgaa ctttttctcg       480
     ctgacaacca tagcaaaatg atgaaaggaa aaaagtttct cgcttactac ttttccgctg       540
     ttcatggact aaaactacgg cattcggtat gacgttacaa tttataattt ctacactaca       600
     aattgtagcc gcaggaaatt ttacagacag tatacacaca tatagctgaa tgtaccttcg       660
     aaattgtatc acagtacgac acgtagttca tgagatatga gcacataaac agtaacgttc       720
     atggaaaacc gccccatcac gcaccaagtt ttaatctatt acttctttac tactaattgt       780
     attcgcaaca gattttacag acatacagca cttatacaaa tgaatatata cctgaaaaat       840
     tatacaattg tacaacatat aactcaataa atatgagatc gtacgaattt tatatgtcat       900
     ttgtattttg attactatct ttctttgttt ggatactgca cttataattt tgtacattat       960
     gcaagacagc cttatttctt atatattctc cgataaatat aacatgtttt tagaaaaaag      1020
     gagatggaca gagagagaag ggataggaga agtactaact caaggcagga ataaataaat      1080
     aaatacccgg gcaacgccgg gttttcagct ag                                    1112
//
ID   Helitron-N8C_LMi repbase;    DNA;    INV; 1608 BP.
XX
AC   .
XX
DT   24-JUL-2014 (Rel. 20.01, Created)
DT   24-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N8C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1608
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 25-25 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1608 BP; 538 A; 315 C; 284 G; 471 T; 0 other;
     tctttatata taaagcagag tgtccgtgtg tttgtgtgta cgtattgcat acaaatctac        60
     agttttgttc caatctttat gaaattttgt acacgtaagc ttcaatccat gaggacggtc       120
     gccgtaagtg taagaatcac gtacaacaca tagttcacga gatatgacgt cataaacaat       180
     gagatgcgcg aaaaactgct gcattaagcg acaatgctgc tcatttcctc ctaaaccact       240
     ggaccgattt caaccaaatt tggtacacat attccttacc gtgaggtaac aattgctgta       300
     ggggtaagaa ccacatacac acatggtcca ggagatatga cgtcataaac aataggagtc       360
     gcaagaaact gccacatcat gtgatgagac tttattcata cactgtatga gaatgagagt       420
     acttagcgac ttgcaacaca cattaaacat aatttcaaac ctttattaca ctttttctcg       480
     ctgacaacca cagcaaaatg atgaaaggaa aaaagtttct cgcttactac ttttccgctg       540
     ttcatggact aaactacggc attcggtatg acgttacaat ttataatttc tacactacaa       600
     attgtagccg caggaaattt tacagacagt atacacacat atagctgaat gtgccttcga       660
     aattgtatca cagtacgaca cgttgttcat gagatatgag gacataaaca gtaacgttca       720
     tggaaaaccg ccccatcacg caccaggttt taatctatta cttctttact actaactgta       780
     ttcgtaacag attttaccga catgcagcac ttatacaaat gaatatatac ctacaaaatt       840
     atacaattta caacatataa ttcaataaat atgagatcat gtatatactg cgatgggtaa       900
     aaacctttca catcatgcac cacgttttaa tacatttacg tatttactac taagacactc       960
     ctgtattcca gtcagctgaa agaaattcct gaaagctgac agtgctgttg acaactgtga      1020
     accaactgtg aagcgtactc ggctgtaggc gaaagcaaga gacttctata gagctacagg      1080
     gaaaggaaga gaatgaaaca gtgtacatcc aacgaatacc cattatttcc ggcagatcta      1140
     ccttttaact tcaagagact gtagtttcca gtgagacttg cattttctat tacgattaat      1200
     aaatcacagg gcaacctatt aaatactgca gagtggtttt gacatctcca tgtttctcac      1260
     acggacaact acatgtcgct tgctcagggg tgggctcccc aaagaattta ttcatattag      1320
     attttggaca agtaaccaga aatattgttt ataatcaagt tttgaattaa atgaatgtat      1380
     gtaaggttac atatcatttg catcttgatg actacctttc tttgtttgga tactgcagtt      1440
     attattttgt acattatgca agacagcctt atttcttgaa tactctccca taaatatgac      1500
     atgttattaa aaaaaggaga tggacagaga gagaagggat atgagaagta ctaactcaaa      1560
     gcttgaataa ataaataaat acccgggcaa cgccgggttt tcagctag                   1608
//
ID   Helitron-N8_LMi repbase;    DNA;    INV; 1494 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.12, Created)
DT   09-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1494
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3237-3237 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1494 BP; 490 A; 284 C; 262 G; 458 T; 0 other;
     tctaatatat aaagcagagt gtccgtatgt ttgtacgtgt tgcatacaaa tctacagttt        60
     tgttccaatc tttatgaaat tttgtacacg taagcttcaa tccatgagga cggtcgccgt       120
     aagtgtaaga atcacatacg atatatagtt cacgagatat gacgtcataa acaatgagat       180
     gcgcgaaaaa ctgctgcatt ttgcgacaat gctgctcatt ttctcctaaa ccattggacc       240
     gatttcaacc aaatttggta cacacattcc ttaccgtgag gtaacaattg ctgcatggtt       300
     aagaatcaca tacggcacat ggttcaaaag atattacgtc ataaccaata gaaatcgcaa       360
     aaaatgccat ataatgcggc gagactttcg aaatacactg tatgagaatg acagtactta       420
     gcgacttgca acaaacttta aacataattt caaaccttta ttaaactttt tctcgctggc       480
     aaccatagta aaatgatgaa aggaaaaaag tttctcgctt actacttttc cgctgtttat       540
     ggagtaaaac tacggctctc ggtatgacgt tacaatttat aatttgaaca ctacaaattg       600
     tagcgacagg aaattttaca gacagtatac acatatatag ttgaatgtag cttctaaatt       660
     gtatcacatt ccgacacgta gttcatgaga tatgagcacg taaacagtaa cgttcatgga       720
     aaattgctcc atccggctgg aagcgaaagc agtttacttc catagagcta caaggaaagg       780
     aacagaatga aacagagtac acccaacgaa tacccattat atcccacaaa tctaccttca       840
     agagactgca gtttccgact tgcatttcta tacatcaaca aggcacaggc caatcacttt       900
     gtgtggcagg cattaatttg gacacgccat gtttctcaca cggccagttg tacgtggctt       960
     gctccagagt cggcacgcca gataatttgt ttgtttacac tccagacgga caaacgaaga      1020
     atattgtgta ccatcaagct ttgagataag agtgttaatt acttcttttc tgactataca      1080
     ctttcatgat gttttcgtga aaacggtatg tgtttttaag taaatatggt gtcttttctc      1140
     cacctctgat gactgtaaaa atgtacttaa attatactaa atattaaaaa tgctaaaact      1200
     atttgtttat gaaacatttt catttattta ttattttcag agtcaactta tttcttgacg      1260
     aaattcaagt atactgaaat gataaaatta tttactttat aatttaaaaa gaaatcgaag      1320
     aataagtggt atcaataaac ctttggtttg aaattggtgt atatccggaa agtcagaatc      1380
     ggaagcctgg aacctgattt ttataatatg tgctttccat ctacacctac tgcagtttca      1440
     catgcagcct ggcagatatt taacatcccg ggcaacgccg ggttttcagc tagt            1494
//
ID   Helitron-N9B_LMi repbase;    DNA;    INV; 1500 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 19.12, Created)
DT   02-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N9B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1500
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3238-3238 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1500 BP; 455 A; 269 C; 379 G; 395 T; 2 other;
     tctagatata tataaatgaa tgtttgtctg tatgtcctct atgtattcat aaaccattca        60
     ttcgattgca atgaaacttt ggtgaactgt tcaccgaacg cccacgaagg tttctgaccc       120
     aaaaacaaaa gggcacgaca catagctcag gagatatgac gtcataaata atgagaggcc       180
     accgcgtgag aatacccaga tttatgcgtc aattattgga aaatgggagt agttagggac       240
     ctgcaacaaa gtttgtatgt aatttcggac gtttatgaag cgttttgtaa ctgatctccc       300
     ccccccccct cccacaaaat gatgaaacga aaagaagtct cccgctcaca acagtttcgc       360
     tgtagatgcc gtaaaactgt cgcatcaggc atgaccttgt gatgttttac ttgattactg       420
     ctgactgtct tcgcaacata ttttgcatat agtatcgata tgtatcacta aatgtgccat       480
     caaatttata tcactgtacg acacatactt caggacatat ctaatatata aaaattaatg       540
     tttatttgtt ttttgttcgt attttatgca cggccatgcc gtacatccga ttgcgataaa       600
     actttgttaa cccattgctt gcactcgcac gaaggttata cgcatactaa aattgaattc       660
     gtatgatgca tggcggaggg tgctttacag ttagctaatt cgtttcttat gccttcacgc       720
     tgaaatggct ggacggatat gaattaaatt tggaacaggt agcttatacc ctgattaata       780
     cgtgggctgc ctttcgtaag ccaccgtatg gtgcatggcg gagggtacct tacaatgggt       840
     taatacattt gtttctcttc acgctgaaac ggctggacag aattgaatga aatgtggaat       900
     gtagatagct tataccccga attaatacat gggctacctt tcgtaagcct acgtaggtgc       960
     atgacggagg gtacgttaca acaaacatcc aaattgtttg actggtcatg aaagtcagca      1020
     cataaatcta tgttttcatg aaggagattt ttataatctg caggacagtg aatttagcat      1080
     ggcggagggt accttgcgac tttgacacca cttgacctat caccatgaaa cttggcgcat      1140
     atgtatgttt ccatatatag gagggagagg agtaggtgga ggaggagacg gacagaaagg      1200
     ggagggagga gacggacagg agagagagag gaggagaatg agggagggga gaggaggaga      1260
     atgagagagg gaagatggtg gcagacaagt gaaaggagat gaacagaggg aggggcggag      1320
     gaactggaca gagaaagggm mtggaggaga ggggggggag caggcgaaca gggaggacgt      1380
     aagggaggag acgggtgtat ataaatcatt cataattaaa caagctaact ctttcaaatt      1440
     acaaacgtta tttgcacaat tatttcttct gcgacagcaa cgcgccgggt accagctagt      1500
//
ID   Helitron-N9_LMi repbase;    DNA;    INV; 1386 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.12, Created)
DT   27-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   Helitron-N9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1386
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3239-3239 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1386 BP; 418 A; 224 C; 359 G; 385 T; 0 other;
     tctaatatat aaaaattaat gtttgtcttt ttgttcgtat tttatgcacg gccataccgt        60
     acatccgatt gcgataaaac tttgtcaact cattgcttgc actcgcgcga aggttatagg       120
     catactaaaa ttaacttcgt atggtgcatg gcggagggtg ctttacaatt agttaattcg       180
     tttcttacgc cttcacgctg aaatggctgg acggatatga atgaaatttg gaacagaggt       240
     agcttatacc ctgattaata catgggctac ctttcgtaag ccaccgtatg gtgcgtggcg       300
     gagggtacct tacaatgggt taatacgttt gtttctccga ggatgaattt ggattaatac       360
     tggcttctct tcacgctgaa acagctggac ggatttgaat gaaatttgga atgcagatag       420
     cttataccct gaattaacgc atgagctacc tttaggaagc caccgtacgg tgcatggcgg       480
     agggtacctt acagtgggtt aacacgtttg ttactcttca cgctgaaacg gctggacgga       540
     attgaatgaa atgtggaatg aagatagctt ataccccgaa ttaatacatg ggctaccttt       600
     cgtaagcctc cgtaggtgca tggcggaggg tacgttacaa caaacatcca aattgtttga       660
     ctggtcacca tgaaagtcag cacataaatg tatgttttca tgaaggagat ttttataatc       720
     tgcaagccag tgaatttagc atggcggagg gtaccttgcg actttgacac cgtttgacca       780
     gtcaccatga aacttggcgc atatatgtat gttttcatat ataggaggga gaggagtagg       840
     tggaggagga gacggacaga aaggggaggg aggagacgga cagagagagg ggagaggagg       900
     agaatgagag aggggagatg gtgacagaca ggtgaaagga gatgaacaga gggaggggga       960
     ggaggaaatg gacagagaaa gggacaggag gagacggggg gaggagcagg tgaacagaga      1020
     gaagggaaag gaggagatgg actaatggaa gattggaaac ctcatatata tttgttcgtt      1080
     tgttcgtatt ttatgcgctg ccataacgtt catctgattg cgataaaact tcgtcaactt      1140
     acttcttgct agtttatggc cagttcaaga attgtttttg agaggaaaaa ttaatataat      1200
     gaagtaacaa atgaaatgat aacttctcct ttagtatgtt aaatttcaat aaatgtattt      1260
     attatcgact ataaaatgaa tatttatttc tatcattcgt aattaaacaa gctaacactt      1320
     tcaaatttca aacgttattt gcacaattat ttcttctgcg gcagcaacgc gccgggtacc      1380
     agctag                                                                 1386
//
ID   HELITRON1_AG repbase;    DNA;    INV; 6666 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   20-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   HELITRON1_AG, a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; HELITRON class;
KW   HELITRON1_AG; Rep/helicase.
XX
NM   HELITRON1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6666
RA   Kapitonov V.V. and Jurka J.;
RT   "HELITRON1_AG, a rolling-circle DNA transposon from African
RT   malaria mosquito.";
RL   Repbase Reports 2(10), 8-8 (2002).
XX
DR   [1] (Consensus)
XX
CC   HELITRON1_AG is a first example of HELITRONs (a rolling-circle
CC   DNA transposons) present in insects. The A. gambiae genome
CC   contains many families of HELITRONs. HELITRON1_AF is one of them.
CC   A defective copy of a HELITRON-like element is also present
CC   in the D. melanogaster genome (AE002840, positions 9827-9264).
CC   HELITRON1_AG has all basic hallmarks of HELITRONs: it is
CC   flanked by 5'-TC and CTAG-3', is inserted into the AT target
CC   site and encodes a 1792-aa HELITRON-like Rep/Helicase protein,
CC   called AGHEL1p.
XX
FH   Key           Location/Qualifiers
FT   CDS           820..6195
FT                 /product="AGHEL1p"
FT                 /note="HELITRON-like Rep/Helicase protein"
FT                 /translation="MQPSVSDIVSQNLTPPEETPNEKKARLQRKRQALYRA
FT                 KKRLPGAAPTLAAVQDDQQAVPSTLAGSSLSAASAILQQQQRRNTDDELLN
FT                 EIAGRYSTPPDETPPEKKARLARKRQALYRAKKRLAGAAPTVAAVQDDQQA
FT                 VPSTSAGTSLSGAPAILQQQQLRRNIDDDLLNEIAGRYSTPPDETPPEKKA
FT                 RLARKRQALYNARKRMVQTPNVATVVNRAPAPASAPVPAPAPAPTPALVDP
FT                 TAAVAIRVPIHQQLQTYVRHLRDHEADQQRQFIARRRMTGHLRVAHGNHES
FT                 YSCPSLHTLAPRVPCNFCSALKWPGEPPSVCCNSGQVVLPPFPEPPAELRQ
FT                 LFDVPQFLLNIRRYNNAFAFTSIGASIRGNDPVRQDLRVGHGGIYNYRIQG
FT                 ALCHRIGSLAVLPGRPPCYAQLYFYDSSSEGQYDEMLNARAKAYGSELNRE
FT                 ILAILQRVFSTHNPIAEMFKHAYERMSVRDDLRLCIHSRIPGIDQRRYNAP
FT                 TADEVGGVFVCDDTTGATEHTRDIVLQHRATGYLQPVFDTNQLADALQYPI
FT                 LFPRGETGWTYGMPKVQRRTRQQQQPSRPTSSSNGAAHIDENDDAAEDPNP
FT                 ELDGAERSANQITPREYAAYRIAWRENAQTLMHRAGRLFQQYCVDQYCKIE
FT                 MQRLKYLREHQAQLRTEAYTGFMDLAGAEGTIADLHPDNLPNVAVEIPVVQ
FT                 EPPVAPRRSIIDPPSNLSRTGTRVILGPSFVGSNRYMRAQYQDAMAIVRAL
FT                 GKPDLFITVTCNPKWPEITQCLLPRQQAPDRPDVIVRVFRLKLKAILNDLT
FT                 MGALGIEVARIHVIEFQKRGLPHAHILVILAEEDKPQTPADYDKIVSAELP
FT                 NPATSSQLFETVQSCMMHGPCGAANPAAPCMKDGTCEKGFPKSFCEQTRSM
FT                 DNGYPQYRRRNNGRSVTVKGIELDNRYVVPYNPWFTHKYNCHINVEVCTSI
FT                 SSVKYLYKYVYKGHDRLSVTLAVGNDEIQQHIDARYLSPTDSCWRIMRFEL
FT                 QAKTHTVVTLPIHLENQQNVFFRANETVSCVLNRGNHTMLTRFFQLAAHDN
FT                 FARALLYHDVPTYYRYAKPTANQRLPWQEPGTKHWIRRIRTGHKTVIGRMV
FT                 SCSMQLMERYCLRLLLCYRKGPTSYEDLRTVNGSVCETFQQAAINEGLLED
FT                 DSEWDRALEEAATYRMPAQLRHFFALILSSGMPQNPRTLWESYASEMSEDF
FT                 HHRNRDRYTTEESDLNKLLRDVEHFRALSDIDRYLRGTTPSKVLTSSPGMP
FT                 QLSEYEHVQAHIMDDDDVNEFIIAERSYLITDLDATLATVHQLNDEQRMVY
FT                 ETVTAAIDRQLATAASQANAGDQRLFFLDGPGGTGKSFLVEKILAHVRRCG
FT                 EIALATAASGIAALLLTGGKTVHSTFKLPLDLNNHSTCSITVQSKRAEMLR
FT                 QTALIVWDEASMSSRFALEAVDRTLQDITGVQLPFGGKVVLLSGDFRQILP
FT                 IVPKGTDAQIINECIKKSTLWPLFRSLQLRDNMRVRTAPNANQASELRDFA
FT                 NLLLRIGEGRHDTFAGLDPSLAKIPHDMIVPHTANPTNDLNTLIDKIYPDM
FT                 QRHFQHPSFFSDRAILSPLNVDVASVNNLVLDRIPGPEQEYRSVDTLVNPE
FT                 EHEHLQLPSEYLNTLNVSGIPVHRLRLKRFAPVLLLRNLNSDMGLCNGTRL
FT                 QIVGLKRNCLHAKILTGTRRGEDVLLPRIFCDSNDKGHPFQIRRKQFPVQV
FT                 CFAMTINKSQGQSLHHLGLYLPQDVFAHGQLYVALSRVTSRANIAVLIPNP
FT                 KRADEEGVSTSNIVYREVVDR"
XX
SQ   Sequence 6666 BP; 1706 A; 1761 C; 1639 G; 1560 T; 0 other;
     tctatatata aattttcgtt aacgctgacg ctcgatgtca cactttgcgt tacgctgttt        60
     ctatctcgcc cgttctgcct tcgctgccgt ataacaccat cacgctcgca cgaccgcacg       120
     acgaataccc ctaccatcgt gagcacgacc aacgctgcag gggtgctcaa ccgtttcctc       180
     gctttccgaa ctcgaccgag cagtgcgcac actatcgact cgcccttgcg agcccctgcc       240
     agcgcatgcg cgtacgagca agcgagcgag cgagcgaacg atcgagttgg ctacgcgata       300
     tgatatattt tttgacaaaa cgaatatcgt ttattaatac ggttataggt gcgatttaca       360
     cttttttaag ttgatttcca gtttttttag tttagtttga gtattaggtt aatttcttta       420
     ggtgcgcatg gtgaagtata gtgtagtgta gtttagaaaa gtgttgtgta ttgtagtgta       480
     gtttagtacg cagggcagtg tagatttagt gtaaggagat tattttcgta acgtacgttt       540
     cgtgtacgtt ttgtggttca atttgttgtt cctgcgtgga acgtgtgttc ctgtgttcct       600
     gtgttcctgt gtttctgtgt tccggcgttt tcttgcaatt ctgtttttgc tacgatatgg       660
     agcataatga ggaaagtgtg ggcaacggtt gccctatgat tgacatcatg tcaggtataa       720
     tatttcctac tttcttttat tcacagcact tatctaaaat tctttttttt tgttttacaa       780
     ttttcaacag ccccagttac agaaccctat ccacaaacca tgcagccctc cgtaagtgat       840
     atcgtctcac agaatctcac tccaccggaa gaaactccga acgaaaagaa agcaaggctt       900
     caaaggaagc gacaggcgtt gtacagggcc aagaagcgcc tcccgggtgc agctcctacg       960
     ctggcagctg tacaggacga ccaacaggct gtaccttcaa ctttggccgg gtcatcctta      1020
     tcagcagctt ctgcaatcct gcaacaacaa caacgaagga atacggacga cgaattgctc      1080
     aatgaaatcg ctggacgata ctccacccca ccggatgaaa caccacccga gaagaaggca      1140
     aggctcgcca gaaagcgaca agcgctgtac agggccaaga agcgcctcgc gggagcagct      1200
     cctacggtgg cagctgtaca ggacgaccaa caggctgtac cgtctacttc ggccgggaca      1260
     tccttatcag gagctccagc aatcttgcaa caacaacaac tacgaaggaa tattgacgat      1320
     gatttgctca atgaaatcgc tggacggtac tccaccccac cggatgaaac accacccgag      1380
     aagaaggcaa ggctcgccag aaagcgacag gcactgtaca atgccaggaa gcgcatggtg      1440
     caaactccga atgtcgcaac tgtggtcaac cgcgccccag caccagcatc agcaccagta      1500
     ccagcaccag caccagcacc aacaccagca ttggtagacc caactgcagc agttgctatc      1560
     cgagtgccaa tacatcagca gctacaaaca tacgtgcgcc atcttcgcga ccatgaagca      1620
     gatcagcagc gacaattcat agcccggcgt cgtatgaccg gccatctgag agtagcacat      1680
     gggaaccatg agtcgtacag ttgtccctcg cttcatacgc ttgcaccacg cgtaccttgc      1740
     aatttctgtt ccgctctcaa gtggcctgga gagccgccca gtgtgtgctg caacagtgga      1800
     caagttgtgc ttccaccgtt tcccgaaccg ccagcagagt tgcgccaact atttgacgtg      1860
     ccgcaatttc tgctcaacat ccggcgatac aataatgcgt ttgccttcac ctctatcggt      1920
     gcctcaatac gaggaaatga cccagtacgc caggatctac gagtcggtca cggtggaatt      1980
     tacaactatc gcatacaagg tgcgctttgc catcgaatcg gttcgctcgc tgtgcttcca      2040
     ggacgtccac catgctacgc acagctgtac ttttatgatt caagctcgga gggtcagtac      2100
     gacgaaatgc tgaacgctcg ggccaaagca tatggtagtg agctgaatcg tgaaatattg      2160
     gccattttgc aacgtgtttt ttcgactcac aatccgattg cagagatgtt taagcatgcg      2220
     tacgaacgga tgtctgttcg agatgatctg cggctttgca tccactcgcg tataccaggc      2280
     atcgatcaac ggcgttacaa tgcaccgact gcagatgaag ttggtggcgt gttcgtgtgc      2340
     gatgatacta ccggagccac ggaacataca cgcgatattg tgctgcagca tcgtgccaca      2400
     ggatacttgc agcctgtgtt tgataccaac cagttggcag atgcactcca atacccgatt      2460
     ctgtttccgc ggggtgaaac cggttggact tacggtatgc caaaggtaca gcgccgaacc      2520
     agacagcagc aacaaccaag cagaccaaca agttcgagca acggagcggc gcacatagat      2580
     gaaaatgatg atgctgctga ggatcctaat cctgagttgg atggagcaga gcgttcagca      2640
     aatcaaataa cgccacgcga atatgccgca tatcgcatag cctggcggga aaacgctcaa      2700
     acgcttatgc atcgtgccgg acgattgttt cagcagtact gtgtagacca gtactgtaag      2760
     atagagatgc agcggttgaa atatttgcga gagcaccagg cacaacttcg cactgaggcg      2820
     tacacgggct ttatggatct tgccggcgct gaaggtacca tcgcggatct tcatcccgat      2880
     aatttgccta atgtggctgt ggaaatccct gtagtgcaag aaccacctgt tgcaccccgt      2940
     cgttccatca tcgatccgcc ctcgaacctg tcgcgtacgg gcacgcgtgt tattctcgga      3000
     ccatcatttg tcggtagcaa tcgatatatg cgagcgcaat atcaagacgc aatggctatt      3060
     gttcgagctt tgggtaaacc ggacctgttt atcaccgtca cgtgcaatcc gaagtggccg      3120
     gaaatcacac agtgcctact tccacgtcag caggccccgg atcgacccga tgttatcgta      3180
     cgtgtctttc ggttaaagct gaaagccata ctgaatgacc taaccatggg agctctcggg      3240
     attgaggtag ctcgcattca cgtgatcgag ttccaaaaac gtggccttcc ccatgcacac      3300
     atactcgtga ttctcgccga ggaagacaaa ccgcagaccc cggcagacta cgacaagatc      3360
     gtgtctgccg aacttcctaa tcctgcaacg tcgtcgcaac tgttcgagac ggtacagagc      3420
     tgtatgatgc atggaccgtg tggggctgcc aatcctgccg caccttgcat gaaggatggt      3480
     acatgcgaaa aagggttccc aaagtcattc tgcgaacaga cgcgcagcat ggataatggc      3540
     tatccacagt accgtcgtcg taacaatggg cgcagtgtga cggtgaaagg aatcgagctg      3600
     gacaaccggt acgtcgtgcc ctacaaccca tggttcacgc ataagtacaa ttgccacatc      3660
     aacgttgagg tgtgtacttc gatcagcagc gtgaaatatt tgtacaaata cgtgtacaag      3720
     gggcacgacc gtctgagcgt taccctggcg gtaggcaacg atgaaattca gcagcatatc      3780
     gatgcacgct acctttcacc gacggacagc tgctggcgaa taatgcgctt tgagttgcaa      3840
     gcaaaaacgc acaccgttgt tacactgcct atccatctgg aaaatcaaca gaacgtgttt      3900
     ttccgggcaa acgaaaccgt ttcgtgcgtg ttaaaccgtg gtaaccatac catgttgaca      3960
     cgattcttcc agctggcggc acatgacaac tttgccagag cgctgctgta ccacgatgtc      4020
     ccgacgtact accggtacgc gaaaccaact gcgaaccagc gactaccgtg gcaggaaccg      4080
     ggaacaaagc actggatccg tcgcatacgt accgggcaca agacagtgat cggccgaatg      4140
     gtgtcctgta gcatgcagct tatggaacgc tactgcttgc ggttgcttct ttgctaccgc      4200
     aagggtccaa catcgtacga ggatctgcgt actgttaacg gttcggtgtg cgaaacgttt      4260
     cagcaggctg ccatcaacga agggctgctt gaggatgatt ccgagtggga tcgtgctcta      4320
     gaagaagcgg ccacttatcg tatgcccgcc cagttgcgcc atttcttcgc actcatcctt      4380
     tcgtctggga tgccacaaaa cccgcgcacc ctgtgggaaa gctatgcgag tgaaatgagt      4440
     gaagattttc accaccgcaa tcgcgaccgg tacacgacgg aggaatccga cctgaataag      4500
     ctgctacgtg atgttgaaca cttccgggcg ctgagtgaca tcgatcgcta cctgcgcggt      4560
     acgacgccat cgaaggtttt gaccagttcc ccaggaatgc ctcagctttc ggagtatgaa      4620
     cacgttcagg cacacatcat ggacgatgat gatgtcaacg agttcattat cgctgaacga      4680
     tcgtatctga tcacggatct cgatgctacc cttgccaccg tacatcagct caacgacgaa      4740
     caacgcatgg tgtacgaaac ggtcacggcg gcaatcgatc gtcaattagc gacggcggca      4800
     agccaagcga acgctggtga ccaacggtta ttcttcctgg atggccctgg tggaacgggt      4860
     aaatcttttt tggtagaaaa gatactggca cacgtccgtc gctgcggaga aattgcgctc      4920
     gcaactgcag caagcggcat agcagcactg ttgcttacag gagggaaaac agtacactcc      4980
     acgtttaagt tgccgctgga cttaaacaat cattccacct gtagcattac ggttcagtcg      5040
     aaacgggccg aaatgcttcg acaaacagca ctgatcgttt gggatgaggc gtcgatgagc      5100
     agtcggtttg ctctcgaagc agtcgatcgg accctgcagg acataacggg tgtgcagctt      5160
     cctttcggcg gtaaggtggt gctgctgtcc ggtgactttc ggcaaatttt accgatcgta      5220
     ccgaagggca cggatgcaca aatcatcaac gagtgcatca agaagagcac attatggccc      5280
     ctgtttaggt cgctacaatt gcgcgataac atgcgggtac gcacggcacc aaacgcgaac      5340
     caagccagtg agttgcgaga ttttgccaac cttctgcttc gtatcggtga aggacggcac      5400
     gatacgtttg caggactgga tccatcgttg gcaaaaatac cgcacgatat gattgtgccc      5460
     catactgcga atccgacaaa cgaccttaac accctgatcg acaaaatcta cccggacatg      5520
     caacggcact tccaacatcc gtcattcttt tcggatcggg ctattctgtc gccgcttaac      5580
     gtggatgttg ccagcgtgaa caacctggtc ctagaccgaa ttcctggacc ggaacaggag      5640
     taccgttcgg tcgatacatt ggtcaacccg gaggaacacg agcatctgca acttccttcc      5700
     gaatacttga acacactcaa tgtcagcggc atcccagtgc atcgcttgcg gctgaaacga      5760
     tttgcaccag tacttttatt gcgcaatctt aattccgaca tgggattgtg taacggtacg      5820
     cgtttgcaaa ttgtaggcct aaagcgaaac tgtttacacg ctaaaattct gacaggcacg      5880
     cggagaggcg aagacgtcct gcttccacgg atcttctgtg acagcaacga taagggtcac      5940
     ccgttccaga tccgccgtaa acagtttccg gtgcaagtgt gctttgcgat gaccatcaac      6000
     aagtcgcaag ggcaatcgct tcaccatttg ggcctatatc tgccgcaaga tgttttcgcc      6060
     catggccagc tatacgttgc actctcgcgg gtgacatcac gagcgaacat tgctgtgctg      6120
     ataccgaacc cgaaacgcgc tgacgaggaa ggtgtctcca caagcaacat cgtctaccga      6180
     gaggtcgttg acagatgatt cttctactga accagagtgt gacgtaatta ctgaaaacag      6240
     aaaattagac attacataaa tataaatatc cattctttca gtttgaaccg gctattcact      6300
     aacaatacat ctaccagaac ctagaacaag acggcagcaa aatacaaaca atacatgtgt      6360
     acatcttcct tggctatcct tactgcattt tcgtttcatg cagcgcctgc aaccaaaacg      6420
     atcacgtaaa cgacgggaca atcaattgaa cttccatgct ggaaggtgga gctttacttc      6480
     atgcaccacg ttccatgcgc acctgacttt gactgaacac cccacatttc caggctctcc      6540
     agcaatcttt ccttggaatg ccatgagact tccaatttcc acgaggaacg aggtggcatg      6600
     ctccagttgt ttctgtgcag cctggagttt ccgtgcgtag cactgtaacc gggcctctta      6660
     agctag                                                                 6666
//
ID   HELITRON1_DM repbase;    DNA;    INV; 564 BP.
XX
AC   AE002840;
XX
DT   29-JAN-2003 (Rel. 8.00, Created)
DT   29-JAN-2003 (Rel. 8.00, Last updated, Version 1)
XX
DE   HELITRON1_DM is a remnant of a HELITRON transposon.
XX
KW   Helitron; DNA transposon; Transposable Element; HELITRON1_DM;
KW   HELITRON1_DM.; rolling-circle DNA transposon; the HELITRON class.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-564
RA   Kapitonov V.V. and Jurka J.;
RT   "HELITRON1_DM.";
RL   Direct Submission to Repbase Update (26-DEC-2002).
XX
DR   Genbank; AE002840; Positions    9827    9264.
XX
CC   HELITRON1_DM is a fossilized portion of a HELITRON rolling-circle
CC   DNA transposon. It is over 70% identical to HELITRON2_AG found in
CC   the A. gambiae genome.
XX
SQ   Sequence 564 BP; 177 A; 115 C; 107 G; 165 T; 0 other;
     ctgcgcgcga aagaatacat taatttgcga gacgctatca acaacaacgc cgacgtcgcc        60
     gaaatcggta accatatcat tttaccgtaa tcgtaaatag gcagtccacg tcatatgcaa       120
     gaatatttac aggatgctct gactttcgtg cgcgaatatg gacgaccatg tttatttatc       180
     acgttcacat gtaatccaaa atggccagag attacatctt tactactgcc tggccaaatg       240
     caatgcatcg ccatgacatt acagcacgtg tgttcagaca aaagttgaag tctttaataa       300
     gtttcattac taaatcacat gtattttgtc ctacactttg ctggatgtgt tcggttgagt       360
     ggcaaaagcg gtttggtttg gttcaacgac agaatctgtc ctgaagtaat cgatagtatt       420
     atttctgcgg aaatattgta gatccatcca cttcattgct ttgcatggct aatagaaatg       480
     tactaaaaat gtcccaaaaa attttaccaa taatacggtc agaaatgtcg acgaatacct       540
     aatatatcgt cgaagaaatc ctga                                              564
//
ID   Helitron1_Dmoj repbase;    DNA;    INV; 2125 BP.
XX
AC   .
XX
DT   28-AUG-2008 (Rel. 13.09, Created)
DT   28-AUG-2008 (Rel. 17.07, Last updated, Version 2)
XX
DE   A new family of helitrons in Drosophila mojavensis.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Drosophila mojavensis; Helitron1_Dmoj.
XX
NM   Helitron1_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2125
RA   Styles P.;
RT   "Helitron1_Dmoj: a new family of helitrons in Drosophila
RT   mojavensis.";
RL   Repbase Reports 8(9), 907-907 (2008).
XX
DR   [2] (Consensus)
XX
CC   Helitron1_Dmoj inserts preferentially into 5'-TT-3' target sites
CC   in T-rich regions and does not produce TSDs. The consensus was
CC   obtained by alignment of 67 elements. Elements are on average
CC   97.5% identical to the consensus. Helitron1_Dmoj possesses a
CC   series of 8bp direct repeats at the 5' end, and does not encode
CC   any proteins. A Helitron1_Dmoj insertion is found within a
CC   recently-transposed Transib1_Dmoj element, therefore
CC   Helitron1_Dmoj is currently active in Drosophila mojavensis.
XX
SQ   Sequence 2125 BP; 700 A; 392 C; 425 G; 608 T; 0 other;
     ttagactcat tcacgaaagt gaaatgagta tattggtttt gtgcaatgtc cgtcttgctg        60
     tccgtccgtc tgtccgtctg tccgtctgtc cgtatgaacg caatctattt cggcgctatt       120
     gaagctagag acttgaaatt tggaacacat actcgtgtat atctccgatt tataaagtgt       180
     taaaattttc ccgatccgcc cactaggggc gtggcaaatc ggaaaatgca ttttccgata       240
     taccagaaat catgtttgtt gaagagctag aaagctgaaa tttggtatgt aggtccgcgc       300
     cgaccaccca agatcacaag ctatggcgga tatatctccg cccattaggg gcgtggcaaa       360
     tcggacaaaa ctgtatctcc taaagttata aacttagaat gctgaaattt tgcacgtaag       420
     ctaatgtttt aattctatga agatgggtga aaaaattata tatctacgcc cactaggggc       480
     gtggcaaatc ggacctgaag atatagtgat ttttcgaatt ctgctatatt ttaggcacta       540
     ttgatgctag agatctgaaa tttggtatat atacgcgggt tgatcaccca agtccaacga       600
     gctatggtag atatatgtcc gcctataggg ggcgtggcaa accgcaaaag tttatatctc       660
     ctacagttta agagctagaa gcttcaaatt tggatagtta agttactggt ggcctcctct       720
     atcgatgccc caaaaataat ttttaagcct ctttaggggc gtggcatatc gaaaaatacc       780
     ctgtaatttt cacatttttt gagcgtaaga attcaaattt tgcatttagg taaccggttg       840
     ctcgttctaa gaactggcta aaattgagga gtcgacggcc actaggggcg tggcaatcgg       900
     catttacagt gcccgaattg cgacatttat atgcgtcagc catctattta tgtatatgta       960
     cacataagta ggcttaatag gcattgatag cacggaagga aacattttta taaaattaat      1020
     aaaatataaa aaaagctaaa ataacaaaaa tttgcaattt acaaaaaagt gttttcagcg      1080
     ggatttgaac tcgcacccaa cccaaacagc atgtttgtca aaatagctaa aataaagatc      1140
     gtcggcgctt cagcctacag caccaccgcg tcgtttcgat caatagtagt taaaacgaaa      1200
     tcacattatt gttatgacgc cacatagcaa agaaaagcca gtgtagcggc tggaaattca      1260
     aaaacaatgc aaagacaaat caatcgcaac gggattctta gaatatgcta gagcacgcat      1320
     ttatgtgtac atacatacac acatacaaat gagcgcgtgt ataaggctgg aatgcttgat      1380
     gctatgcgtg caggcttaca tatataatta tatatacata tgtatgtatt tgcgtatatg      1440
     tatttgaggg ctaatttaag aagaaacaaa tttaaactta taaaattatt cgactaagaa      1500
     aatgaaaagt attaagtgcc attcagtcaa gctcgcacct tcccaataaa atatctattt      1560
     tataaaaaac gaaatatgta tgaaaaaaaa aaaaaaaata ataataacat agtagaggtt      1620
     cgaacctccc ctactctaac attacttgcg tcgcccttag cacccgcgcc actgctttgc      1680
     tcgagcaatc agttgctaaa atagaatagc ttaataagag agcgtcatca gacaaaacta      1740
     cagtaacggc tagaaagtcc agaaatcaat cgaaattcta agaatgtgag aaaaggcgcg      1800
     cttctgtctg tacgcataga atagacgatg agtgtgtgca caagcatagg aaaatcgcgc      1860
     tgatctgctg ttagcttgaa gtgaagccgg tatccaatgt atggatataa atacatatat      1920
     aataaaaatc aaaattgtat aaattatata tgtatgtaat ttgaatgcaa tagctatcga      1980
     tgattttcca attttaatgg caaaatgccg tgttttttgc tgcgcactag acttgaaaat      2040
     tgcactatat actctggttg acagcgtttg ggctgtgaat gagtcttctg caatcggtat      2100
     cgcccgactg caacgttctt acttg                                            2125
//
ID   HELITRON2N_AG repbase;    DNA;    INV; 1087 BP.
XX
AC   .
XX
DT   29-JAN-2002 (Rel. 7.00, Created)
DT   29-JAN-2002 (Rel. 7.00, Last updated, Version 1)
XX
DE   HELITRON2N_AG, a nonautonomous rolling-circle DNA transposon - a
DE   consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; HELITRON class;
KW   HELITRON2N_AG; HELITRON2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1087
RA   Kapitonov V.V. and Jurka J.;
RT   "HELITRON2N_AG.";
RL   Direct Submission to Repbase Update (26-DEC-2002).
XX
DR   [1] (Consensus)
XX
CC   HELITRON2N_AG is a nonautonomous rolling-circle transposon
CC   derived
CC   from the autonomous HELITRON2_AG. Some copies are less then 1%
CC   divergent. It's very likely that the mosquito genome harbors
CC   some active Helitrons.
XX
SQ   Sequence 1087 BP; 334 A; 193 C; 216 G; 344 T; 0 other;
     tctatatata taaaaatctc gtgtcacggt gtttgtcgcg agcaaactcc gaaacggctg        60
     gatcattttc aacgaaactt tgcacacacc ttatggtggt atgagaatag gttttaagac       120
     tcacatcatt ttcagaagtt gcactaaact taatttatta gcaattttct aactcccata       180
     caaaggacat cattgttgtt gttgtataca gcactttgac agtcggtgtg aagcgcggtt       240
     tacactcggt gtaaggtgcg gtttacactc gctgtgaaat gcctagcggt ttacgatgct       300
     gtcacaaata tccataatga caaaacagag atggagtact ttagtttggg aataatgaat       360
     taaaaaatac atgctatttc gctttgtcct gtttgctgtt tgatgttcca aaacgaacaa       420
     atatgcttgc tttaataatt gtaacataaa catgtttggt tactgatgtt aaactcgcaa       480
     gtgtaaacaa catttttcgt tatggtgttt tttttttcgg tctgcccggc tgcggtctta       540
     cccgaggtca aacgatgtct gtttgcggtt tggacttacg aacatcgtgt ttttcgcatg       600
     gacaattata tgtggcatgt tctcgcgtgg gtaaaccttc caatctatac atactagcta       660
     aagacagatt aaccaaaaat atcgtccatt cattagcgct tcgagatttg cattagagat       720
     tcatagtagt tatatgtgtg tgacaagtat gtaattattt gcatgtaaat aaatcaatct       780
     acgtaattct acactgtttt actgttccaa attatgttct taaacatatt atttgagtaa       840
     ttaacgacaa tgacatcaat gaaaacaaat aaaatgaata aaaaattaaa tgtgaattta       900
     aacacctata tttgcaactt aacggactgg cagacgaagg cgcgagaccg tgagcggttt       960
     cggacactcc tgaggcaggc caagaccgca aagcggttgt agtgccggat aagtaatttg      1020
     caacttcaaa tacttaatcg gcaactaata aaatgtgggg taaaactagg tttaccgggc      1080
     cagctag                                                                1087
//
ID   HELITRON2_AG repbase;    DNA;    INV; 6365 BP.
XX
AC   .
XX
DT   29-JAN-2003 (Rel. 8.00, Created)
DT   29-JAN-2003 (Rel. 8.00, Last updated, Version 1)
XX
DE   HELITRON2_AG, a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; HELITRON class;
KW   HELITRON2N_AG; HELITRON2_AG; Rep/helicase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6365
RA   Kapitonov V.V. and Jurka J.;
RT   "HELITRON2_AG.";
RL   Direct Submission to Repbase Update (26-DEC-2002).
XX
DR   [1] (Consensus)
XX
CC   HELITRON2_AG is a rolling-circle DNA transposon. The consensus
CC   sequence encodes well-preserved remnants of the ~1600-aa
CC   Rep/Helicase
CC   protein (positions 1448-5992). There is not enough sequence data
CC   to reconstruct it precisely. There is only a 57% nucleotide
CC   identity
CC   between HELITRON2_AG and HELITRON1_AG. However, HELITRON2_AG is
CC   75% identical to HELITRON1_DM from D. melanogaster.
CC   Nonautonomous elements derived from HELITRON2_AG is deposited in
CC   Repbase as HELITRON2N_AG.
XX
SQ   Sequence 6365 BP; 2074 A; 1231 C; 1181 G; 1879 T; 0 other;
     tctatatata taaaaatctc gtgtcacggt gtttgttgcg agcaacctcc gaaacggctg        60
     gatcattttc aacgaaactt tgcacacacc ttatggtggt atgataatag gttttaagac       120
     tcacatcatt ttcagaagtt gcactaaacc aaggaccgta aagatatcag gtcaagttat       180
     aagcccgttt tgacagctag gtggaagaag aatcgacgaa gaaaactgac agttagtttt       240
     ccgcgtttgg cgaacgcttc aagttctcga aggaaaattt ccattttaaa tcacgggcag       300
     tgtcctaaca aactaaaata ttcacccaaa ttgatctcca ccaaatatta accatgcaaa       360
     acgtaaacaa tccatcaata catatacaag cggaaaacca tctgtcaaaa tcggagccca       420
     ggggggggat cgccaaaacc gctataacta cacctcatta tacattccac cttgcactaa       480
     acttaattta ttagcaattt tctaactccc atacaaagga catgattgtt gttgttgtat       540
     acagcacttt gacagtcagt gtgaagcgcg gtttatacgg acgtcacacg aagcgtaaac       600
     tttggcgtaa actgaatttt agccatacaa ccctgaaatg ttttgacagt aagtttacgc       660
     tctcccatac aaatcaagcg taaacttttt gagtttacgc ctcgtgtgac gtccgtatta       720
     cactcggtgt aaggtgcggt ttacactcgc tgtgaaatgt ctagcggttt acgatgctgt       780
     cacaaatatc cataatgaca aaacagagat ggagtacttt agtttgggaa taaagaatta       840
     aaaaacacat gctatttcgc tttgtcctat ttgctgtttg atgttccaaa acgaacaaat       900
     atgcttgctt taataattgt aacataaaca tgtttggtta ctgatggagt tcaacatcaa       960
     ggcaagtgta aacaacattt ttcgttatgg tgttttttct tcggtctgcc cggctgcggt      1020
     cttacccggc gctctggcac caatcgaatc tggcaccaat cgaacataca aaatgtatgg      1080
     gatttgatat gttcgatttg ctatcaaaca aatcgaacat gtcaaattcc atacattttt      1140
     catgttcgat gtcgtgtttg attggtgcca gagctccacc tttatgtgta catggggcta      1200
     ttgaatgagt agcagttttc tagcatacaa gtgacatttg agagcttaga agcaaactca      1260
     cgttaatact tttgtttgtg caatttgagt atcaaaactg tgtaacaaca taaaaatttt      1320
     aatcgatata tcggaaaaaa cacgtatgta atatgaagtt ccttcaaaaa aatattatta      1380
     tccctttatt gatatcatta ttcctttaaa attctgtttt tcattaattg gcgttttata      1440
     gtaaacaatg ccagcaagga ggaatatagg acgaagaacg aatacagcag caagtaagag      1500
     aaggagcaga actgaaagaa catctgatca aatagatcgt gacaatttaa gtttgcgtga      1560
     aggaatgtca cagttacgcg catctcagtc acaacacaat cgaatagggc gaaatcaaca      1620
     acgacgatta gaaagagcac aaacgcgccg gttcgtaact aacatccgca gaacatatga      1680
     ccaacaacga cagcaagagc atcgagcttt ttcatattct tccttccatc gaattgcatt      1740
     tcaatacgag cctgacattg catattataa tcattcaaaa gttttaatag gctccatgga      1800
     tcaggaatgt cgcttctgcc atgcacttaa attcaaacat gagccagctg gaatgtgttg      1860
     cgcttctgga aaagtttatt tgccatcact tgagacacca ccggaaccgt tgaaaggttt      1920
     acttacaggt acagattctg attctgccat gtttctgaaa tccatccgaa aattctattc      1980
     gtgtttccaa atgacctctt ttggagcgac cgaaatagtt tccaacgctt cttcaaatgg      2040
     tcaaatattc aattctacgt ttaaaattaa aggccaagtt taccacaaag tagggtcgtt      2100
     attaccaatg ccaattacta cccctaattt tttacaaatt tatttcatgg gtggtgacga      2160
     taacaatcgt gtaaatacgc gttgtagttt cactaacctc agttcgatca gtgccagacg      2220
     cattgtctat gaattgggcg cccttttgaa tgagcataat gttttattga attcttttaa      2280
     atcacatatg cacgaattaa caagtgataa ttatgctatt gtcattaatc cggataaaac      2340
     cccatccgga gaacatgtgc gtagattcaa tgcacctgtc atgaatgacg ttgctggaat      2400
     cgttatcggc gaccgcacgt ctacgcgaga aatcgttatc cgaagaagga acaacaatct      2460
     ggagttcatt tcggatacac atcgctccta tgatgctctc caatatccac tcatcttctg      2520
     gaaagggcaa gacggatact gtattaatat taaacaacgg gatccaatta caggtaatgt      2580
     cttactaaaa cagcaacata tttttattct acaaactgta tgtttctttt tatatacatt      2640
     ttgttatagg aaacgaaaca aaaagttagc tctatgaatt tttattcata tcgtttgatg      2700
     gttagacgca acgaggataa cttaattctt cgatgtcgtg aactattcca acaatttatt      2760
     gttgacatgt atgcaaaggt agagaacgaa agactacgat atctacgtca caatcaaaag      2820
     aaactgcgag caaaagaata tatccattag cgagacgcta ttatgagcga tgtaaacagt      2880
     gccgatattg gtgataatgt tattctacca tcatcgtatg tgggtagtcc acgtcatatg      2940
     caagagtata taaaggatgc aatgacattc gtacgggaat aatgaagacc atgtttattc      3000
     atcactttca catgtaatcc aaagtgggaa gagattacat gtttgctttt gcccggacaa      3060
     aatgcaacac accgccatga aataacagca cgagtgttca agcaaaaatt gaaatcttta      3120
     atgaacctaa taacaaaaat ggatgtattt ggacctacac gttgctggat gtactcagtt      3180
     gaatggcaaa agcgaggatt acctcatgct catattttaa tttggttagt cgataaaata      3240
     cgtcctgaga caatgatagc ttgatatcgg cggaaattcc cgatccgtca agagatcagc      3300
     tactctttga tattgttacg actaacatga ttcatggtcc atgcggcgct cttaattctt      3360
     tatcgccttg catggcagaa ggaaaatata caaaacgttt tcctaaacaa ttcaccaatg      3420
     agacaatcac taatgtcgat ggatatccga tatatagaag aagaaatact gaaaacggag      3480
     ggcattccta cacacataaa attaaccaag actcattcat tgatattgac aatcgatggg      3540
     ttgtgccata ttcgccactt ttaacaaaaa catttaacgc tcatatcaat gttgaattct      3600
     gcagttcggt gaagagcatc aaatacatct gtaaatacat caacaaaggc tctgatatgg      3660
     ccgtattcaa tattcaaaat actgaagtaa atactgctgg atcaattacc aacgacgaat      3720
     taacgggcta tcaaattggt cgatacatca gttccaatga agccgtctgg cgtatatttg      3780
     gttttcaaat tcatgaacgg tatccggctg ttgttcattt agccgtccat ctcgaaaacg      3840
     gtcaacgcgt tttttttctg aggaaaatgc aattgaacgt gctacaaatc caccgagaac      3900
     aacactaact gcattttttg aactatgtaa ccgtacggat gtattaggtg cctttgctcg      3960
     gactctccac tattccgaag taccgcggtt ttttacatgg catcaaacaa aacaatggat      4020
     gccccgtaaa caaggcatac cagtagatgc atgtcctggc ctgtttaaat caaatacctt      4080
     aggccgtgtt tataccataa atccaaagca gatagagtgc ttctacctac gacttttgtt      4140
     gataaatgtt attggcccct tatcgtttga aaatatacgt acagtaaatg gccaacaaca      4200
     ttcaacatat aaagatgcat gtcttgcatt gggcttgctc gaaaatgaaa accattggca      4260
     cgatatgatg gctgaagcta ctcttgattg tacagcaacc cagatacgac ttctttttgc      4320
     taaagtatta tatgaattat atttttatat aaggattata tgactgacga tatactgcat      4380
     agaataagga tgtcccacaa tgacccaacg atgccataca gcgattatat gtataatgag      4440
     gcattgatcg ctattgaaga tctatgtatt atcattgcta atttatccct tcatcatttt      4500
     gggttaaatt caccaaatcg agctgcatct gatgtagtgg acactgaagt taatcgtgaa      4560
     ctgcaataca atattacagc aatggaagac attgttgctc gcaacgttcc actgttgaat      4620
     gatgaacaat caatgattta cgaacaaatc atgctggcag tatcacaggg agagggtggt      4680
     ctctttttct tggatgtccc aggtggcact ggaaaaactt ttctaatttc gttaattctt      4740
     gccaaaatac gatctaataa tgatatcgcg ttagccgttg catcatctgg aattgcagca      4800
     acattattag aaggaggaag aacagcgcat tcagcattta aattaccgtt gaacattcat      4860
     aataacccag ctgcagtgtg caatataaaa aaaaaacaat cgtctatggc caaagttctg      4920
     caaaactgta aaattatcat atgggatgaa tgtactatgg ctcacaaaaa ttcactggaa      4980
     gcacttaata gaacactcaa agatttaaga aataacaatc aattctttgg aggtatttta      5040
     ctactcctat cgggtgattt caggcaaaca cttccagtga ttccacgatc aacatatgct      5100
     gatgagatca acgcttgctt gaagttgtcg ccattatggc ataattttca aaaggtacag      5160
     cttagcaaaa acgtgcgcgt tgaaatactt caggattcat cagctatgac tttctctgat      5220
     caattgttag atattggcaa cggaaaagtt cctttccatg gcaatactgg ttgcattaaa      5280
     atgccatcaa atttttgtac agtcgtcgat tcctagcaga cactcataga ttgcatattt      5340
     cccgatttaa aaactcaata tgtacatcaa tcgtggcttg cagaaagagc tattcttgca      5400
     gcaaaaaatg tcgacgtcga agaattaaac ttccaaatac aagatgcatt gcctggtgat      5460
     ttggtttcct acaaatcatt tgatacagtt tgtgattccc acgaagctgt taattatccg      5520
     acagagttat tgaactcttt aaatttacca ggcatggctc cacatgtact cagattaaaa      5580
     gttggatcac cggtaatact gctaagaaac ttgaatccac cacgtttggg taatggcacg      5640
     cgactggtaa ttaaaaaatt aaagaaaaat attatagaag caacaattct aaatggcaaa      5700
     tttgttaatg aaaatgtgct gctaccacgc attccaatgt tctcaactga ttcaacaatt      5760
     gagtttaagc gcgtgcaatt tccaatcaat ctggcttttg caatgacaat taataaatcc      5820
     cgaggtcaaa cgatgtctgt ttgcggtttg gacttacgaa catcgtgttt ttcgcatgga      5880
     caattatatg tggcatgttc tcgcgtgggt aaaccttcca atctatacat actagctaaa      5940
     gacagattaa ccaaaaatat cgtccattca ttagcgcttc gagatttgca ttagagattc      6000
     atagtagtta tatgtgtgtg acaagtatgt aattatttgc atgtaaataa atcaatctac      6060
     gtaattctac actgttttac tgttccaaat tatgttctta aacatattat ttgagtaatt      6120
     aacgacaatg acatcaatga aaacaaataa aatgaataaa aaattaaatg tgaatttaaa      6180
     cacctatatt tgcaacttaa cggactggca gacgaaggcg cgagaccgtg agcggtttcg      6240
     gacactcctg aggcaggcca agaccgcaaa gcggttgtag tgccggataa gtaatttgca      6300
     acttcaaata cttaatcggc aactaataaa atgtggggta aaactaggtt taccgggcca      6360
     gctag                                                                  6365
//
ID   HelitronN-1_DPe repbase;    DNA;    INV; 1155 BP.
XX
AC   .
XX
DT   16-JAN-2012 (Rel. 17.08, Created)
DT   16-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-autonomous helitron: consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HelitronN-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1155
RA   Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(8), 1383-1383 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 1155 BP; 328 A; 302 C; 217 G; 308 T; 0 other;
     tttttatacc cgatactcaa aatgagtatt ggggtatatt agatttgtgg taaaagtgga        60
     tgtgtgtaac gtccagaagg aatcgtttcc gaccccataa agtatatata ttcttgatca       120
     gcatcaatag ccgagtcgat tgagccatgt ctgtctgtcc gtctgtccgt ccgtccgtct       180
     gtccgtccgt ccgtctgtcc gtctgtccgt ctgtccgtct gtccgtcccc ttcagcgcct       240
     aatgctcaaa gactataaga gctagagcaa cgatgttttg gatccagact tctgtgatat       300
     gtcactgctc caaaaatatt tcaaaacttt gccccgccca cttccgcccc cacaaagggc       360
     gaaaatctgt ggcatccaca atttcgacga tacgagaaaa ctaaaaacgc agaatcgtag       420
     aagatgacta tatcttctag agtgcaaaat ctgaaccaga tcgtataatt attacagcca       480
     gaatcacgaa aacaatttca ctctttctcg ctctgtctca ctctaacaca caggtttcat       540
     ggtcggtttt gccaattgca aaatatgagt tcaaggatct cagaacctat aaaagccaga       600
     gcaaccaaat ttggtatcca cactcctgtg atatcggacc ttgaccgttt cctgtccaaa       660
     tttcgccaca cccccttccg cccccgcaaa ggacgaaaat ctgaggcaac cacaaatctc       720
     agagactatt aaggctagag taaccaaatt tggtacacac actcctttaa gatgtcacta       780
     taaaacgtat atctcagaat ttcgccccac ccccatccgc ccccacaaag gacgaaaatc       840
     tgttgcatcc acaatattgc agatttgaga aaactaaaaa cgcagaatca tagataatga       900
     ccatatctat cagattgctg aatctggatc agatcagatc atttttatag ccaaaaggaa       960
     caaatcaatt tgcagtggct acgcagcgcc cgacgtcacg ctcagactga ttttctgtct      1020
     ctctcgcacg cactctttgt cgtgtcgtta aatattagcg gcgtctgccg gaggagagcc      1080
     atactgactt agtatcgggt ataaccgtag agttgcggtg tccgcagcaa ctcacaacgt      1140
     tccccctcgt tttct                                                       1155
//
ID   HERMES      repbase;    DNA;    INV; 2749 BP.
XX
AC   L34807;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   22-DEC-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Musca domestica Hermes transposon transposase gene, complete cds.
XX
KW   hAT; DNA transposon; Transposable Element; Ac element; HERMES;
KW   Hermes transposon; Tam3 element; hAT element family;
KW   hobo transposon; transposase.
XX
OS   Musca domestica
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Muscoidea; Muscidae; Musca.
XX
RN   [1]
RP   1-2749
RA   Warren D.W., Atkinson W.P. and O'Brochta A.D.;
RT   "The Hermes transposable element from the house fly, Musca
RT   domestica, is a short inverted repeat-type element of the hobo,
RT   Ac, and Tam3 (hAT) element family.";
RL   Genet. Res 64(2), 87-97 (1994).
XX
RN   [2]
RP   1-2749
RA   Warren D.W.;
RT   "HERMES.";
RL   Direct Submission to Genbank (21-JUL-1994)William D. Warren,
RL   Molecular Genetic Resource Service, CAMBIA, GPO Box 3200,
RL   Canberra, ACT 2601, Australia.
XX
DR   GenBank; L34807; Positions       1    2749.
XX
CC   repeat_unit 1..17
CC   /rpt_type=terminal inverted repeat
CC   CAAT_signal 354..357
CC   TATA_signal 394..399
CC   CDS 450..2288
CC   /codon_start=1
CC   /product="transposase"
CC   polyA_signal 2300..2305
CC   polyA_signal 2336..2341
CC   polyA_signal 2349..2354
CC   polyA_signal 2353..2358
CC   repeat_unit 2733..2749
CC   /rpt_type=terminal inverted repeat.
XX
SQ   Sequence 2749 BP; 946 A; 457 C; 502 G; 844 T; 0 other;
     cagagaacaa caacaagtgg cttattttga tacttatgcg ccacttgcta cttatgagta        60
     caattgtgct ttgccacttg aacaaaaaat tcattgattc atcgacactc gggtatgttt       120
     tgtcgtgtcg ttctgcgcac tcagttaaat tttttgtctt actctcttgc tctcagcaca       180
     tcaagtgttg ttacttgttg ttactcagtc gcctgcctta tgcttttgga gagcgaaagc       240
     acaacgatca gaacggagaa gtaacaactt gttttgctaa caagtggctt atgcacttga       300
     gtgtgtttta cacatgtttt tgagtttcac agcaaaatgt tccgatttga gcacaataat       360
     tttaccgtta ttttgagttt tttagttttg aataataaat gtgatttact gttcatcctc       420
     aaaagagttt aagcagtagt agagattaga tgcagaaaat ggacaatttg gaagtgaaag       480
     caaaaatcaa ccaaggatta tataaaatta ctccgcgaca taaaggaaca agttttattt       540
     ggaacgtttt agcggatata cagaaagaag acgatacatt ggtggaaggg tgggtgtttt       600
     gccgaaaatg cgaaaaagtt ttaaaataca caactaggca gacatcaaac ttatgtcgtc       660
     ataaatgctg tgcctctcta aagcaatccc gagaattaaa aactgtttca gctgattgca       720
     aaaaggaagc aattgaaaaa tgtgcacaat gggtggtacg agattgtcgg cctttttcgg       780
     ccgtctctgg atccggcttt atcgatatga taaaattttt tattaaagtt ggagccgaat       840
     atggtgaaca tgtcaacgtt gaggaattgt taccaagtcc aataacgcta tcgagaaagg       900
     taacttcgga tgcaaaagaa aaaaaagctc tgattagtcg agaaattaag tctgctgtag       960
     agaaagatgg tgcatcagca acgatagatt tgtggaccga taattatata aaacggaatt      1020
     ttttgggagt aacgttacac taccatgaaa acaatgaact gcgagatcta attttaggtt      1080
     taaagtcctt agattttgaa agatccacag cagaaaatat ttataagaag cttaaagcca      1140
     tttttttaca attcaacgtc gaagacttga gtagtataaa atttgtgaca gatagaggag      1200
     ccaatgtcgt aaaatcattg gcaaataata tcagaattaa ctgcagcagc catttgcttt      1260
     caaacgtgtt ggaaaattca tttgaggaga cacctgaact caatgtgcct attcttgctt      1320
     gcaaaaatat tgtaaaatat ttcaagaaag ccaatctgca gcacagactt cgaagttctt      1380
     taaaaagtga gtgccctaca cggtggaatt ccacatacac gatgcttcga tctattctcg      1440
     acaactggga aagcgtgatt caaatattaa gtgaggcggg agagacacag agaattgttc      1500
     atataaataa gtcgataatt caaacaatgg tcaacatcct cgatgggttt gaaagaattt      1560
     ttaaagaatt acaaacatgc agttcaccat ctctgtgttt tgttgtgcct tccattttaa      1620
     aagtaaaaga aatatgttca cctgacgttg gcgacgttgc agatatagca aaattgaaag      1680
     tgaacattat aaaaaatgta agaataatat gggaagaaaa tttaagcata tggcactaca      1740
     cagcattttt tttctatccg cccgccttgc atatgcaaca agagaaagtg gcacaaatta      1800
     aagaattttg cttatccaaa atggaagatt tggaattaat aaaccgcatg agttccttta      1860
     acgaattatc cgcaactcag cttaaccagt cggactccaa tagccacaac agtatagatt      1920
     taacatccca ttcaaaagac atttcaacga caagtttctt tttcccgcaa ttaactcaga      1980
     acaatagtcg tgagccacca gtgtgtccaa gcgatgaatt tgaattttat cgtaaagaaa      2040
     tagttatttt aagcgaagat tttaaagtta tggaatggtg gaatcttaat tcaaaaaagt      2100
     atcctaaact atctaaactg gctttgtcgt tattatcaat acctgcaagt agcgctgcat      2160
     cggaaaggac attttcccta gctggaaata taataactga aaagagaaac aggattgggc      2220
     aacaaactgt cgacagcttg ttatttttaa attcctttta caaaaatttt tgtaaattag      2280
     atatataatt acatttttaa ataaaaagaa tattttttat aagtttgttt gttaaaataa      2340
     aaaaaaaaaa taaataaatt ttggactgga aaaaatttaa gtttaaaaga agcatttttc      2400
     tttttttttt taatatactt atgctctttt cctagtcttg tacagaatca tatgcaatac      2460
     tacaaacaat agcacacaca cacaaccctc atgttcaatg agtatacaac acaacaagaa      2520
     gtgagtataa tttgccaatt gacaaatcgc acacgtccac ttgtgagttt gtacactttt      2580
     tactctctca tactctagcg gtgatcttaa catcaaacaa ctgttgttgt taagttgtga      2640
     aaaaatactc gtgtataaaa aaatacttgc actcaaaagg cttgacaccc aaaacacttg      2700
     tgcttatcta tgtggcttac gtttgcctgt ggcttgttga agttctctg                  2749
//
ID   HERMIT      repbase;    DNA;    INV; 2716 BP.
XX
AC   U22467;
XX
DT   15-SEP-2005 (Rel. 10.09, Created)
DT   15-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Lucilia cuprina transposon Hermit, complete cds.
XX
KW   hAT; DNA transposon; Transposable Element; HERMIT.
XX
OS   Lucilia cuprina
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Oestroidea; Calliphoridae; Luciliinae; Lucilia.
XX
RN   [1]
RP   1-2716
RA   Coates C.J., Johnson K.N., Perkins H.D., Howells A.J.,
RA   O'Brochta D.A. and Atkinson P.W.;
RT   "The hermit transposable element of the Australian sheep blowfly,
RT   Lucilia cuprina, belongs to the hAT family of transposable
RT   elements.";
RL   Unpublished (2005).
XX
DR   EMBL/GenBank/DDBJ; U22467; Positions       1    2716.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..875
FT                 /product="HERMIT_1p"
FT                 /translation="MNLEIIKSIENGVFRLSKKAHSRSKIWEFFCQIEKED
FT                 GKIIDGLVICEKCNRILKYNGKQTSNLIRHNCYVARSRNVALKQVNSADKE
FT                 NYLLACSQWVVEDCRPFSIVDGKGFKKMVQSLLNIGTKYGNHIDIADMVPN
FT                 SRTISRRISDIADDKRSKINEELQMAITSGTASITTDL"
FT   CDS           965..1882
FT                 /product="HERMIT_2p"
FT                 /translation="MDFESSTANNVLTKLNSILKNFEVNSMENITFVTNRG
FT                 SNIVKALKGQNRINCANHLLNNVLDSGFNSTSELTPFFGACKKLVKYFKKT
FT                 SLQHILSTSLKNYCVTRWNSHLNLFQSISNNYFKIQEILASINEMQRISDI
FT                 NLALLNALVAIFEKFDIMSKKLQGVNYVTINYVYLTINTLKTICEASDSDI
FT                 EIIKTLKINILREMETKYVANLTILHYAACFLYPPTNSCLDERQLNEVKDF
FT                 CVSELMKCVPSSESSVSSLNFNEPPKDFQLFFSTFMNSINPSMAESISDEV
FT                 NRYSYLKINFDVKF"
XX
SQ   Sequence 2716 BP; 997 A; 392 C; 406 G; 921 T; 0 other;
     cagagatgtg catgagatga ttcactattg attcctattc gtattatctt tgcttttgtt        60
     ttgcttctaa tcatcagcat atcttaatag cattgcttgc attgtttgtt cttttacaat       120
     tgattgtcat ttactcaatc acttttaaag tgccgttagc aataacaaat caaaaacaat       180
     aattgctgtc ttatttttat gtaaagtatt atgtaaagta ttcaaagtat attcgtaaaa       240
     gttcaatgaa aagtgagtac attttacaaa agcagtgttt tttttttatt tgaataaatt       300
     ttcgtacgag gtttaaaaac attattttgt gtttttaaga tataatgaat ttggaaataa       360
     taaaaagtat tgaaaatggt gtttttcgtc tttcaaaaaa agcgcatagc agaagcaaaa       420
     tttgggaatt tttttgtcaa attgaaaaag aagatggtaa aattattgat ggactggtga       480
     tatgtgagaa gtgtaatcgc atactaaaat ataatggaaa gcagacgtct aatctcatcc       540
     gccacaattg ttatgttgca cgaagccgca acgttgcgtt aaaacaagtt aacagtgcag       600
     ataaggaaaa ttatttgtta gcgtgttcgc aatgggttgt agaggactgt cgcccatttt       660
     caattgtaga cggcaaaggt tttaaaaaaa tggtacaatc gcttctcaat attgggacaa       720
     aatatggaaa tcacatagac atagccgaca tggtgcccaa ttccagaacc atatcacgcc       780
     gaataagtga cattgcagat gacaaaagat ctaaaataaa tgaggaattg caaatggcaa       840
     taacgagcgg aactgcatcc attactacag atctctgaat tttgtgaaaa gacaattttt       900
     atgtgtaaca tttcatttaa taaaagattt aaagttaaaa gaaattgttt tagatgtcaa       960
     atcaatggat ttcgagagta gcacagcaaa taatgtgcta acaaaattaa attccatttt      1020
     gaagaacttc gaagtaaata gcatggaaaa tataacgttt gttactaata ggggatcaaa      1080
     cattgtaaag gctcttaaag gtcaaaatcg gataaactgc gcaaatcact tgttgaataa      1140
     cgttttggat tcgggattta acagcacaag tgaactaacg ccattttttg gggcttgtaa      1200
     aaagttggtc aagtatttta aaaagacctc tttgcaacat atactatcaa cttctcttaa      1260
     aaactattgt gttacccggt ggaattcaca tctaaattta tttcaatcaa tttcaaataa      1320
     ttattttaaa attcaagaaa ttcttgcttc aattaatgaa atgcagagaa tttctgatat      1380
     caatttagcc cttcttaatg cacttgtagc catttttgaa aaatttgata ttatgagtaa      1440
     aaaattacaa ggtgtaaatt acgtcacaat taactacgtt tatttaacca tcaataccct      1500
     taaaactatt tgcgaagcaa gcgattcgga catcgaaata ataaagacat taaaaataaa      1560
     tattttaaga gaaatggaaa ctaagtacgt tgctaattta actatacttc attatgcggc      1620
     atgtttcctg tatccaccaa ccaattcctg cctagatgaa agacaactaa atgaagtcaa      1680
     agatttttgt gtttccgaat taatgaaatg tgttccgtcg tctgaaagtt cagtcagttc      1740
     tttaaatttt aatgaaccac caaaagattt ccaactattt ttctcaactt ttatgaactc      1800
     aattaatccg tccatggcag aaagtatatc agatgaagta aatcgttaca gttatcttaa      1860
     aataaacttt gatgttaaat tttaaagtgt tgcaattgtg ggaaagtcat agttcagagt      1920
     atcctcgatt atacaagttt gcccaaaaaa tactggcgat acctgcaagc agtgccgcat      1980
     ctgaacgagt tttttctgca gcaggtaaca taataactga aaagcgtaac cgtattggcc      2040
     caaaaactgt gaataattta ctttttttga attcactttg taaatatgag taataacatt      2100
     attgccattt ataatttatt aaaaaaaata gttttaggat tgaactgaat tgcattaact      2160
     tttttatttc acaacctttt aaatatagtt aaaatatgct caataaattt tttgtaagat      2220
     aatactatgt aatacctata atacattaat aaatgaaata caaatatgtt tatttctaac      2280
     gaaatataac atttagtttg atttattata tcttaatttc agaaaataac tttattttaa      2340
     atctatttct tatataaaaa tataacatta taattttgaa taatattata tctttataaa      2400
     taaaataaaa taagaaaatg caagaaccat gctcctaaat acaatcgtaa ataaattaaa      2460
     acatactcac tcaaagaagc agaattttac tcaaaagcat tagcatattc acaacaatca      2520
     tatatattca atgctttttg cgaatattat gaatatccag aaactgcaag caattatatg      2580
     catttagtaa ctaaactctt gttgtagtga atcatgcaaa ggcacctttc gtttaagtga      2640
     tgtatactga tgtctcagtc ttcacttttg caaaataatt aatatgtcgc ttgaatgcca      2700
     ttcatgcaca tctctg                                                      2716
//
ID   HeT-A2_DVi  repbase;    DNA;    INV; 4880 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   HeT-A non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   HeT-A2_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4880
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1938-1938 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~85% identical to HET-A_DV.
XX
FH   Key           Location/Qualifiers
FT   CDS           1240..3810
FT                 /product="HeT-A2_DVi_1p"
FT                 /translation="NYLPLTTLTIIAMSNPDTSSTTYSSAELAISPGLLND
FT                 LSDMSLSPMSPMPTPLNRLQSFSADSLVAAATRATTPSALSPQAFISTACK
FT                 MPAQKGQQQKRATNMKGTNIVSEPTTTKMASADAQAQLVHFKRLIAQLESD
FT                 CAENAVTEHFSTNTQNVENSNIHSNGHYSGDLIANNTDSNEARQFNSPTYA
FT                 TILADNVAHQNSKNLLCLNCSSDSSSSHAPGIGGPGGKITTTATTGASHYK
FT                 LLHPTGKTANQNRKINARKTNRQISANSRSSQQDSRRNQHANRFNLLSESD
FT                 LEAPQQHLPQQLPATTKQPTTSTKIPTIAKVAMXNVHPAAAATAVNTTPPD
FT                 SLSFNTQHQQADAVNISAPAAKHYKPPQICILHANQPEQNGIDSVIAKLNG
FT                 QNPPIIDYGLKLGGPGILRILPKTLETYSKIINVLNLDNSINYNTYQRREE
FT                 RSFRVVVRGIHASTSTDAIRNELTCMGYTIRNVYCPKYKNRSGPGTYQPNI
FT                 FFVELAPDPAKNRSIFGVRNLCKYVVRFEWPKINGKKLPQCHRCQRFNHTA
FT                 RYCRHPARCVKCGNEHLTQTCVKPANVPATCANCGSDHTANYKGCPLYLDL
FT                 QQAKLLSQPTTKNTKSQIRQPQQKQPNLPQRQKQPQRQQPAQQQQAPTQKP
FT                 TPMQPKKNKKKKQNKKSKQNGGQTKPQPISIPSAVSITSVTPSNSDNINTA
FT                 NNANNFNPPTVPASNSLDPRSRWARIQRLQKQQQQLRQLERPHSVQSREQI
FT                 VSIQRQLLENLSKRQVATDQQPVPQGQPLPMQMDVEQQPQQKQQPNNTYPP
FT                 NDPNNQILFQMAQKKQEQLDRLTGSMSLMQRQLQELFRHGDNSTMPAKTCN
FT                 NSNQ"
XX
SQ   Sequence 4880 BP; 1628 A; 1310 C; 755 G; 1185 T; 2 other;
     taaatcaata aattgctata gctatatata ttttcaatta cttattaaat atacatatat        60
     acctagcata tatattgcta caaactgtcc gtctacggac aatcataccc tcttagctaa       120
     aaagagagca atttaatcaa aaatttatta cctataaata aattaataca taaccaaaaa       180
     taacaattaa cccttcaaat ctctaaaaac aaggtattac atcaactttt gccataaaac       240
     ttcaagccca aaggtgacca atcagattaa cctaaaaatt ctagcaattt ctcagcaaaa       300
     gtttatgcca atatatgacg tgtgtgtgtg tgggcaattg ttctggtttt ttgcacactt       360
     atacaatcgc taaaatagtt gctgtcgcgc aacttgacac acacacgcat acacacactt       420
     attacatttc ataatttaca catatataca tctgtcaaaa catatacata tatactttca       480
     catacatatc tacaactcct gtcaaaacac atatataaac aaatatatat atctacagca       540
     aacacataca aactcacwta tatacattac ttcccctctt ttttgacgtc catataagtg       600
     acgcgcgcat agaaacctga cgaagctgag agcaggcgca accgtagcta gtcgactttc       660
     tggtttgtga attgactaaa tcggtcaact tggtgcgaaa ccaaaagcac acactcacaa       720
     acaaatcaca acaaagcgcc atttagtcgt ttcatccacc catcgccatt ttgcactttt       780
     cctatttcat ataaactcaa cctttgcaaa aaccaacaaa gagcttaagg ttttacacgt       840
     cccctttgta ggctgctctt aattttcgta aaggttgaca caaacaaatt caaaactggt       900
     gcttcatcac caataaacta aataaattaa aactaaatac ttaccttaat caaacctatt       960
     aaaaaattga agcttaatca ggtgtgtcgc caccaacaat attaagccac aatcacacat      1020
     acacttactt atacttacct tatcacacct tctcatatac ttacctatac ttaccattat      1080
     cacaccttca tatatatctc tatacttacc ctatcacacc ttcatatttt aatatttacg      1140
     ccctataaat aaaaatataa tttcataccg gtgtgccatc accaatcata aaatatatat      1200
     aatatatata cttaccatat aaaatactta ccatattaaa actacttacc tttaaccaca      1260
     cttaccatta tcgccatgtc aaatccagac acttcgtcca ccacatactc gtccgcagag      1320
     ctggcaatat cgccaggcct cctgaatgac ttatcagaca tgtcactctc accgatgtcg      1380
     ccaatgccga caccactgaa ccgtctgcaa tcattttcag cagactcttt ggtggcggcc      1440
     gcgactaggg ccacgacacc atcggcactg tctccccaag ctttcatatc gacagcctgc      1500
     aaaatgcctg cgcaaaaggg acagcaacaa aaacgtgcca cgaatatgaa agggacaaac      1560
     atagtgtctg aaccgacaac aacaaaaatg gcgtcagccg atgctcaagc acaattggtc      1620
     cattttaagc gtctgattgc tcagcttgaa tccgattgtg ctgaaaatgc cgtaactgaa      1680
     catttttcaa ccaacactca aaatgtcgaa aactctaaca ttcatagcaa cggacactat      1740
     tctggtgatc ttatcgctaa taacacagac agtaatgaag ctcgccaatt caactcgcca      1800
     acatacgcaa ccatcttggc tgacaatgtt gcgcaccaaa actccaaaaa cttgttgtgt      1860
     ttaaactgca gtagtgacag cagctccagc catgctcccg gtattggtgg tcccggcggc      1920
     aaaatcacca ccacagccac taccggtgca tctcactata agttattgca tcccacaggc      1980
     aaaacagcca atcaaaaccg caaaataaac gcgcgcaaaa caaatcgcca aatctcggcc      2040
     aattcccgtt catcacaaca agattcaagg cgcaatcaac atgcaaatcg attcaattta      2100
     ctgtcagaat ctgaccttga agcgccacaa caacacctac ctcaacagtt gccggcgaca      2160
     actaaacagc cgacaacgtc gactaaaatt cctaccattg caaaagtagc aatgnccaat      2220
     gtccatccag ccgctgccgc cacggccgtc aatactactc ctccagattc cctgtccttt      2280
     aatactcaac atcaacaggc tgatgcggtc aatatttctg cccctgcggc gaaacattac      2340
     aaaccgcccc aaatatgcat cttacatgca aaccaacccg aacaaaacgg catcgattct      2400
     gtaattgcca aattaaacgg acaaaacccg cccataattg attatggatt aaaattgggt      2460
     ggtcctggca tattaagaat cctgccaaaa actttagaga catactctaa aatcataaac      2520
     gtcctcaatt tggacaattc aatcaattat aacacgtacc agaggcgtga ggagcgctca      2580
     ttccgggttg tggtgcgggg cattcacgcc tccacaagca ccgacgcaat ccggaacgag      2640
     ctgacctgca tgggctatac gattcgcaac gtatattgcc caaaatataa aaatcgcagc      2700
     ggccctggta catatcaacc gaatatattc tttgtggaat tggctcccga tcccgcaaag      2760
     aatcgatcca tattcggtgt cagaaatctc tgcaaatacg tcgtccgctt cgagtggcct      2820
     aaaataaatg gcaagaaatt gcctcagtgt caccgatgcc agcgcttcaa ccacacggcc      2880
     cgttattgcc gccaccctgc tcgctgtgta aagtgcggta atgagcacct cacacagact      2940
     tgcgtcaaac cggcaaatgt gccagccact tgtgcaaact gcggctcgga tcatacagcc      3000
     aactacaagg gctgcccctt gtatctggat ttgcaacaag caaaactgtt aagccagccc      3060
     accactaaaa acacaaaatc acaaattcgg cagccgcaac aaaaacagcc gaatttaccg      3120
     cagcggcaaa agcagcctca gcgtcagcaa cctgctcaac agcagcaagc tccaacgcag      3180
     aagcctacgc caatgcaacc aaagaaaaac aaaaagaaaa aacaaaacaa aaaatcaaaa      3240
     caaaatggcg gacagacgaa accgcagcct atcagcatcc catccgcggt ttccatcaca      3300
     tctgtcacac catcaaattc agacaacatc aatacggcaa acaatgccaa taatttcaat      3360
     cccccaaccg ttcccgcatc caactctttg gatccacgct ctagatgggc gcggatccaa      3420
     agattacaaa aacaacagca gcagctgcgt caactcgagc gacctcactc tgttcagagc      3480
     agagaacaga tcgtttcaat acaacgccag ctgcttgaaa acttatcaaa acggcaagtt      3540
     gccactgacc aacaacccgt cccgcaaggg cagccactgc ctatgcagat ggatgttgag      3600
     cagcagccgc aacaaaaaca acagccaaac aacacctatc ctccaaacga tcccaataat      3660
     cagatactat ttcaaatggc ccaaaagaag caggagcagc tagataggct aacgggctca      3720
     atgtcgctga tgcagcgaca attgcaggaa ctatttcgcc acggcgataa ctccacaatg      3780
     cccgccaaaa cctgcaacaa ctcaaatcaa taaactgttc agatgcccgg cttcattgac      3840
     acattcactg ctaatccaaa caaaaaattt cggaaaaaac tgacaaattt tacttacctc      3900
     tagctcacta aaaaatgctt ttttcttttc cttttgtact tacctctcac ttacctcttt      3960
     attattttac ctacctcatt tacttacctt tttactttat cctccttttg ccactgtttt      4020
     ttcctgaaat atacttacct catcacaaat tgcatttctc aatgcaaaca ttaaatagca      4080
     taatcaacaa cgcaaccaac agaaactgca atcaacaagt tatcaaaaca aactgccagc      4140
     catgtgccgc tgtgtgcgcc gctgtgtctg ctcgctcgcg acaccctgga acttttcatt      4200
     gctggaatga cgtgagcaca tgcacacaca cgagtacacg tcttcgtcca tgcgctggcg      4260
     ctcacacgga caccactgac aagatgtcta tgcgatattg cccggctagt cacagccaaa      4320
     atccttgccc accccatggc caatggcaaa agctactgct atttgcattt ttaaatgcaa      4380
     aaaacggcca ttatggggag gggggggcaa tctcttattc accacggact acctccagca      4440
     gcttcaacta tcatcttaat tcagccaaca ataagaaaac acacacaatc aaatcataca      4500
     cacacacaca aagccatatc gagaaagcaa caataacaaa cacaatgcgc ttactgttgc      4560
     ctcctctcat acacgaattt gccaattcgc tattatttcc caatattctt tttcattccc      4620
     tttcccgcaa cgcagatatt taaattatgc caatttgcat ctgataacag ccagtgctaa      4680
     gcgagagaag gtacttggcg aaaacaacat caatcttctt atcaaatgcg atattattta      4740
     tctgctcttg atgtgtggat ccaacatagg gatggggaga attttttaat ctgggaaaat      4800
     aaaacattaa acattcaaca caggacggac atgaaaaatc gcagttgtga attgtggagt      4860
     ggcccaggcg tgatctgtcc                                                  4880
//
ID   HeT-A3_DVi  repbase;    DNA;    INV; 4347 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 17.09, Created)
DT   14-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   HeT-A3_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4347
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1939-1939 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(201..671,675..2624)
FT                 /product="HeT-A3_DVi_1p"
FT                 /translation="MISASRKIVNTPAPPATAVAPPFLTTATATTTTTTET
FT                 PSFPSYAAALAHNNAAPLAQITIIRSGTSSSPTSSNNDDCNNSNLPISGEK
FT                 LFHKQQLISTKAVSQTRRKTARILNRKISAKSRLTQQYTSSNARLASNRFS
FT                 LLSESDLDASDHQLQPKSSPPKQRQANAMINSLASAVQSALTACPPSSPML
FT                 APTTTTSTHNAPTAQTAAIAATPKTASIPAASTTIPFYXAVTNAPPNIVTN
FT                 FLSAPIQQQHEQHTNFNPVPKQFKPPQICVQHNESNWNGIDSLVAKLNGHN
FT                 PPIVDYGLKLGGPGILRIIPKSTQTHEHIIHILETDSSINFNTYQKRDERS
FT                 IRVVVRGIHASISTTKIRNELSDMGYIIRNVYNPVYRNRSNPGHHCPNLFF
FT                 IELAHNSIKNPTTIFNVQELCKFLVRFEWPKTDDRKLPQCHRCQRYNHTAR
FT                 YCRHNPRCVKCGQEHLSQQCTKPINLPANCANCSQSHTANYKGCPLYLDLL
FT                 KSKLISNTNIRNVQSRQQLLPRQSNPNIQRQQRRQIRSQQRQQAHMPLQLQ
FT                 LPLQQQLPTLLSLPKPTNKKQKAKARKQKSKQHKRAQMERALAQRQRSNVI
FT                 KAANIPIINNYNNIPINNVNSDTIPVHNSIKPAPSANLSSSIAAVTTTSTA
FT                 AATRNISRTSANLDPRLRWPKTQNIQQQQQQRQIEQFGSMINRDQTVLMQR
FT                 QHLDTLTSTRHNAASAHHLNQHEPTPMQIDAEFQQQPPQQQHHQTPILPST
FT                 EHNSTTQLLVKLAQRQQEQLDKLTRYMSDVQQKMQGIFRHGDDSTQIAASP
FT                 SSSSI"
XX
SQ   Sequence 4347 BP; 1451 A; 1221 C; 652 G; 1022 T; 1 other;
     gcagctctag tgatgcgcaa acacagtaaa caaatgcacg aaatatagct ggacatgcca        60
     actataatca caatatctat aacagcaaca ttaataatat taagaaaaat aaaaacgaag       120
     gacactcttc aagtgacctt tttattgata ttgagggtat cgatagtgga ccatctacgt       180
     caacagcagc taatctactg atgatttctg catcgcgaaa gatagtcaac acaccagctc       240
     cacctgctac agccgttgct cccccttttt taacaacagc aacggcaaca acaacaacaa       300
     caacagaaac tccatcgttc ccatcatacg cagccgcact ggctcacaat aatgctgctc       360
     ccttggcaca aatcacaatt attcgcagcg gaaccagcag cagccccacc agcagcaaca       420
     acgatgattg caacaatagc aatttgccca tatctggcga aaagctgttc cataagcaac       480
     aactcatatc aactaaagct gttagtcaga ctcggcggaa gactgcacgc atcctaaacc       540
     gaaaaatctc agccaaatcc cgtctgacgc aacaatatac atctagcaat gcacgactag       600
     catcaaatcg attcagtctt ctatccgaat ccgatctaga tgcgtccgac catcagctac       660
     aaccaaaatc gtaatcgccg cctaaacagc gacaagcgaa cgctatgatc aatagcctcg       720
     cttctgctgt acaatcagct ctgacagcat gtccaccatc ctcaccaatg ttagctccca       780
     caacaacaac ctcaactcac aacgcaccga cggctcaaac agcagcaata gcagctaccc       840
     caaaaacagc ttcaattccg gctgcttcaa caacaatccc cttttacwat gctgtcacca       900
     acgctccccc caatattgtg actaacttcc tttctgcccc catccaacaa caacacgagc       960
     aacatacaaa ctttaatcct gttccaaaac agttcaagcc cccacaaata tgcgttcaac      1020
     ataatgaatc caattggaat ggcattgatt cgttagtggc caaattaaac gggcacaatc      1080
     cacccatagt cgactacggc ctaaaattgg gtggccctgg catcctacga atcattccca      1140
     aatcgactca aacacacgaa catatcatac atatccttga aactgacagc tccattaact      1200
     tcaatactta ccagaaacgt gatgaacgct caattcgggt tgtcgtacga ggcattcacg      1260
     cctccattag cacgaccaaa attcgaaatg agctatccga tatgggctac ataatacgta      1320
     atgtatataa ccctgtttat cggaatcgca gtaatcccgg tcatcactgc ccgaatctat      1380
     tctttattga attagctcat aattcaataa agaatccaac aacaattttc aacgtccaag      1440
     aattatgcaa attcttagtc cgttttgagt ggccaaaaac cgacgacagg aaactgcctc      1500
     aatgccaccg ctgccaacga tacaatcaca cggcgcgcta ctgtcgtcac aatccgcgct      1560
     gcgtgaaatg cggccaggag catttatcgc aacaatgtac taagcctatc aatttaccgg      1620
     caaactgtgc caactgctcc caatcacaca cggccaatta taagggctgc cccttatatc      1680
     ttgacttgct gaaatcaaaa ctaatatcaa atacaaacat tcggaacgtt cagtcaaggc      1740
     agcaactgct accgagacaa agcaatccga atattcagcg gcagcaaagg cgacaaatac      1800
     gctcgcagca acgtcaacag gctcatatgc cactgcaatt gcaattgcca ttgcaacaac      1860
     agctgccgac attgctgtct ttgcccaagc caacaaataa aaaacaaaaa gccaaagcgc      1920
     gcaagcaaaa atcaaaacaa cacaagcgag cacaaatgga acgtgcgctt gcgcaaaggc      1980
     aacgatcaaa tgttatcaaa gccgcaaata ttcccatcat taataattac aacaatatcc      2040
     caattaacaa tgttaattct gacaccattc ctgttcataa ctctatcaaa ccggcaccaa      2100
     gcgccaatct ttcatcctca atagcagcag taacaacaac atcaacagca gctgcaacga      2160
     gaaatatatc aagaacttcc gcaaatttgg acccgcgcct aagatggccc aaaactcaaa      2220
     acatccaaca acagcaacag cagcgtcaaa ttgaacagtt tggttcgatg atcaatcgtg      2280
     atcaaactgt tcttatgcag cgccaacacc tagatacact tacgtccaca cgacataatg      2340
     ctgcctctgc tcaccacttg aaccagcacg agcctacgcc aatgcaaatc gatgctgagt      2400
     ttcagcaaca gccaccacaa caacaacatc atcaaacccc tattcttcct tccactgagc      2460
     ataactcaac cacccaacta ttggttaagc ttgcccaaag gcaacaagaa caactggaca      2520
     agttgactcg ctacatgagt gatgtgcagc agaaaatgca aggaattttc cgacatggag      2580
     acgactccac tcaaatagct gcttcaccct catccagctc catctaaggc tctgaacaaa      2640
     taacctatca actaactgaa aagaaaagaa actccaactt acctctttca taaacatctt      2700
     tcaaacctac ctttacttac ttacctttct acaactttca ctgatataaa acacctatgc      2760
     gtatgtgtgt ttgcctgcat cgcttattgt catccttcgc aattgcgccc aacatcagat      2820
     gcacgcactc gctcacactc aaacgcgtgc ccaaataaat atccagcaca cacttccgta      2880
     tgctggcaca cactcacata accaatgccc agcaaacgtt gcctcaccat cacagaatta      2940
     tatactcgca cacagacgcg ccagcccgcc tgccgccggc ccatcccatt gccgcctatt      3000
     tgcatcccct ccagtgcgca cacagacgca taacgccgct actatcatac acttacacgc      3060
     acgcgcaacc acaaagacaa cgcactcagc ccaagtatag cccagctgat tgaacttcac      3120
     catcatcatc ctcgctaccg tcaccagcaa aacatgtcaa ccagcggctg caaaaacaac      3180
     aatcaacatc aacaacaaag tgctgctgca cgaagctggc aactatcttc attagcagcc      3240
     gtttagcaac accagcagcc gccgccgaat agcagcccca gcaacaacat caaaaaccgc      3300
     ttcatctata atcaataaga ttcattcact acttatatat atgtatgtat gtgcgtgcat      3360
     gtatgtatat acatgcatgt atgcgcatat atgtacatac atgtatgtat atatatgtgc      3420
     attaattaca tataatttaa atactctcct taatacttct atatgtggca gattgtaata      3480
     caagagccac ttaggttccc ggattgctca gctaatgcca atgttttcta ccaaggaaac      3540
     tgccttttcg agtgtgagag aatggcaccg gctcagcagt cttactattg caattgcaca      3600
     catgtatata tagtaacttt ctccattgaa atattttcga gggatccagt cctaaattta      3660
     ataacaaaat atttgatgaa ctttttcaat tacctgcccc aatcttatat agaatctcac      3720
     ttgacgatca aatggcacgc ctcgatgatg taatattatc gctgctgcca attatagtgt      3780
     ccatatcata acaagtcgcc atgtaatcct atcacacggt ggcaatttac ctatcgctgc      3840
     acactcgtcg caattatata ttcacacata catatatatg tacttgcaag cgcacaaact      3900
     tgctggtatg tatttgttgt cagatatacg cacgagcgca agcacacgca ctgtcataac      3960
     aaaataccaa caaaatcaca gacactcaca cacatgcgca aaagcttgcc catgcacatt      4020
     gtgagcgtgc caccctatct tttatcgtct agactttcaa aacataattt ctaaaaatgc      4080
     aaagaataca catgatccct ccaaaatgtt tcaatccaaa acaaaagatt ttctctctca      4140
     tactcatcaa cgcacaaaca gcataactcc tgtcaattac ctgctggctt atggtaaaaa      4200
     ttatttactg acgccgcaca agccccaatt gtatattaca tccactctta tcaaaccaca      4260
     actaatgtat accatgtaac atccaatacc tagtatttaa tacaattaca acaaattatt      4320
     ttataattat tctcactaat cacacaa                                          4347
//
ID   HET-A_DV    repbase;    DNA;    INV; 6192 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   14-JAN-2012 (Rel. 17.01, Last updated, Version 2)
XX
DE   Drosophila virilis non-LTR retrotransposon Het-A, a consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; gag domain;
KW   HET-A_DV.
XX
NM   HET-A_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RA   Casacuberta E. and Pardue L.M.;
RT   "HeT-A elements in Drosophila virilis: Retrotransposon telomeres
RT   are conserved across the Drosophila genus.";
RL   Proc. Natl. Acad. Sci. U.S.A 100(24), 14091-14096 (2003).
XX
RN   [2]
RP   1-6192
RA   Gentles A. and Jurka J.;
RT   "Het-A non-LTR retrotransposon.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 6192 BP; 2029 A; 1623 C; 973 G; 1548 T; 19 other;
     taaatcaata aattgctata gctatatata ttttcaatta cttattaaat atacatatat        60
     acctagcata tatattgcta caaactgtcc gtctacggac aatcataccc tcttagctaa       120
     aaagagagca atttaatcaa aaatttatta cctataaata aattaataca taaccaaaaa       180
     taacaattaa cccttcaaat ctctaaaaac aaggtattac atcaactttt gccataaaac       240
     ttcaagccca aaggtgacca atcagattaa cctaaaaatt tctagcaatt tccagcaaaa       300
     gtttrtgcca atatatgacr tgtgtgtgtg tgggcaattg ttctgrtttt tctttgcaca       360
     cctatacaat cgctaaaata gytgctgtcg cgcaacttga cacacacacg catacacaca       420
     cttattacak ttcataaatt acacatatat acatctatca aaacatatac atatatactt       480
     tcacatacat atctacaact cctgtcaaaa cacatatata aacaaayata tatatctaca       540
     gcaaacacat acaaactcac ttatatacat tacttcccct cttttttgac gtccatataa       600
     gtgacgcgcg catagaaacc tgacgaagct gagagcaggc gsaactgtag ctagtcgaca       660
     ttctggtttg tgaattgact aaatcggtca acttggtgcg aaaccaaaag cacacactca       720
     caaacaaatc acaacaaagc gccatttagt cgtttcatcc acccatctcc attttgcact       780
     tttcctattt catataaact caacctttgc aaaaaccaac aaagagctca agcttttaca       840
     cgtccccttt gtaggctgct cttaattttc gtaaaggttg acacaaacaa aatcaaaact       900
     ggtgcttcat caccaataaa ctaaataaat taaaactaaa tacttacctt aatcaaacct       960
     attaaaaaat tgaagcttaa tcaggtgttt cgccaccaac aatattaagc tacwatcaca      1020
     catacactta cttatactya ccttatcaca cttctcatat acttacctat acttacctta      1080
     tcacaccttc atattacata tattcatact tacctatact taccttatca tactcatata      1140
     taattataat ttcataccgg tgtgccatca ccaatcacaa actatatata atatatatac      1200
     ttacctcaac catatactca ccgtatacca atacctacct ttcacccata tttaccaatt      1260
     accactatca atatgtcaga tccaaacact acgcccacta ctcacctgtc cgccgagcct      1320
     rcaatatcgc caggactctt gtcaaactta tcaggcctac tgctctcgcc gatactgaca      1380
     atgccggcat caatgaacgg tctactatca atttcagtag actcattggc gccagcaaca      1440
     gccctgtccc cccaggctct catatcgaca gccagtgaaa cacctgcgca aaaaggacaa      1500
     gaacagaaac gcgctgcgrg caaagaaaca gaaaacactg tttcggaaac gacaacaaca      1560
     tcatcaataa cggcaaaaac aacagctaca aacacgaata tcgagagtat tcatatacca      1620
     gctgacgctc aggcacaact agcacatttt aaacgcctaa ttgcccagct tgagttggat      1680
     actactcctc caaacagtca agctgccgac aactttacca gctactacga tgaacactcc      1740
     tctagtgatt caatcgtaaa tattatggat agcgatgatg ccccttgcac accaaagcca      1800
     gctcaaccgc tgccgatgag cacctttcgc caccatactc ccacttcggt tgttgctaca      1860
     aaaacctcca cacaagtcat ttcgccaaca tatgcagcca ttttggctgg caatgctgca      1920
     aatcaaaaac ccaaaaattc aacgtgtata agcagcagca gtgacagcag ttccaacaat      1980
     gcacccggta ttggtggtcc cggcggcaaa atcaccacca cagccactac cggtgcatct      2040
     cactataagt tactgcatcc cacaggcaaa acagccaatc aaattcgcaa aaataatgca      2100
     cgaaagtcaa atcgccaaaa ctcggcaatt tctcgcctat cccagcaaga tgctcaaaga      2160
     cgcaaccaat ttgcaaatcg gttcacatta ttatctgaat ccgactttga agcgccagat      2220
     acacatcagt cccaacagct gccggcgaaa actaacaatt tggccgtgcc gtacaagctg      2280
     ccctgtcacc tgtcaaacag tcaacaacta cgacaacaac tccaactaac acaagagcag      2340
     cattgacaag tatccattyc gccactgccg ccacggccgt caatgctact ccttctaact      2400
     ctcccgactg tcaacaacaa cagcaagctg gtgcgatcaa tgtttctgcc cctgcggcga      2460
     aacactacaa accgccacag atatgcattc agcattacaa ccagccagat caaaacggca      2520
     tcgattctgt aattgccaaa ttaaacggac aaaacccgcc cataattgat tatggattaa      2580
     aattgggtgg tcctggcata ttaagaatcc tgccaaaaac tttagagacw tactctaaaa      2640
     tcataaacgt cctcaatwyg gacaattcaa tcaattataa cacgtaccag aggcgtgagg      2700
     agcgctcatt cmgggttgtg gtgcggggca ttcacgcctc cacaagcacc gacgcaatcc      2760
     ggaacgagct gacctgcatg ggctatacga ttcgcaacgt atattgccca aaatataara      2820
     atcgcagcgg ccctggtaca tatcaaccga atatattctt tgtggaattg gctcccgaty      2880
     ccrcaaagaa tcgatctata ttcgaaatca gaaatctttg caaatacgtc gtccgcttcg      2940
     agtggcctaa aatagatggc aagaatttgc cacagtgcca ccgatgccag cgctttaacc      3000
     acacggcccg ttattgccgc caccctgctc gctgtgtgaa gtgcggtaat gagcacctca      3060
     cacagacttg cgtcaaaccg gcaaatgtgc cagccacttg tgcaaactgc ggctcggacc      3120
     atacagccaa ttacaagggc tgccccttgt atctggatct gctacaagca aaactgttgt      3180
     ccctgccaaa cagcaaaaat atcagtccga atgttcggca gcctcagccg aaattacagc      3240
     ggcggcaaaa gcagcctcag cgccagcaat ctgctcaaca acagcagcag caacgcaaaa      3300
     accagcgcca gtgcagccta agctaatcaa caacaaaaat aacaagaaat caaaacaaaa      3360
     tggtggacag ataggaacgc aaccaattag cactccagct ggagttcccc gaaaatctac      3420
     cacaccatca caaacaacaa tatcaatacg gcaaacaatg ccaataactc caatcccccc      3480
     accgtctcct catccaactc cttggatcca cgctctagat gggcgcggat ccaaagttta      3540
     caacaacaac aacagcagca acgccaactt gagagacctg actctgttca aaccagagaa      3600
     cagatcatct caaggcagcg ccagatgcta gaaaattgtc catccggcag ccacctccgc      3660
     cacaacccgt cacacaacaa caatccacgc caatgcaagt tgacgttgag cagcagccac      3720
     cacaacaaca gcaactttac aacaccctcc tccaacgatt gcgaaacgat atactgcttc      3780
     aaatggccaa caagcagcaa gagcagttag acggtctgat gggctcggtg ttgatattgc      3840
     aacaacaatt gcaaggagtg ctccgcctag gcgcagactc tacaccgctc gctgtaccat      3900
     ggtcaaactc aagccaataa tttgttcaga gcccgttttc attggctcat ctactgctaa      3960
     tcaaaattaa aatcctggaa aaaatagcaa cttttactta cctccaactt ttttattagt      4020
     taatttcccc tttattttag tacttacccg ttacttacct ccttattatt tttacctacc      4080
     ttatttactt acctttttaa tttatcctca agcagctatt attttcctaa aatataccaa      4140
     cctcatcaca aattgcattt ctcaatgcaa cacaacacaa tcatcaatgc aattgtcaaa      4200
     agttgcaaaa tacaaaatgc cacaacaaat tgccagtcat gttccgctat gtgcgcctct      4260
     gtgtctgctc gctcacaaca ctccagcttt tcaatgctcg aatacagtga gcttatgcac      4320
     acacacgcgc acacctattc gtcaatgcgc tggcgcacac taaaacataa cagacaagat      4380
     gtctgttcca cacttgccca ccccatgacc aatggcaaca gaagctgcta tttgcatccc      4440
     taaccggcct acgagggaag acgggcaact tccttttcaa gaaaagctcc agaaatccac      4500
     atttggcagc atcaaacatc atcactcctt tacacacaca cacacacaca atcacatcga      4560
     gaaagcaatg aacacaaaca caatatgctt atcattgcct cttcacacca atgaatctgc      4620
     caattcaaaa ttacttacta aaattctctc tcatttttta tcccgcatcg caaatattta      4680
     atcatgccaa cacgcatttg ataacagcca gtgctaaatg agagaaggta ctcggctaaa      4740
     ataacatcaa ttttcttatc aactgcggtg ttatttatct gcttttgatg tgggaaacag      4800
     aggataggga gattttttaa attgggaaaa caaaaaacca acaatcaaca caggacggac      4860
     atgacaaatc acagttgtga attgtggagt ggccctggtg ttctctgttc atttgccaac      4920
     cctatgtctc gggcaatgca gacacacaca ccataattgg gaacacacac acactgtata      4980
     ttcatgcgcc gagtccaatt ctctatcaat aagaaacaag aaaacattct ccttatttcg      5040
     tacatcaaac acagacaaat cacaacgaaa aattatttaa actccattaa ataaattctc      5100
     tcatcatttg ctgtactctt atcaataatg ctggcttatg gcgaaccaga tttgctgacg      5160
     ccgcacacca ctccaattgt acttcttcta tacacttgaa tttttattta ctaaaaataa      5220
     gagacaatca ttttagctct ttcataaagt attttttgca caaatggtat gaattaattg      5280
     gcaaattcat ataattttgt aaaacataca cgacacaaat tcctaaacat gtatatacac      5340
     ataaacatat cacaaaacac aaaaatttaa aatgtataga attaagagta tatcaataaa      5400
     ctctggaggg gggattggtt cggtgtgtga cggtgggagg ggggatactt tgtaccgctg      5460
     caggatagtg gcctgtgtgt gggtgtgcat acccgtgatg gtttggagcg gttagcatga      5520
     gctagtaggc accttaatgc tgcctcgcca tgtctcgagc cctccaggcc accacgacca      5580
     tcatactaaa cactcgcctc tctgtgcgat gcgaatgctc gatgcccgac gctcggtact      5640
     cggtactcgg tacacgatgc tcggtgtcct cgatcccgtt tcccattcgt ctcatccgac      5700
     ccggtctcct gctcaaccta aaacagaaaa aattgagtct ctttttggtg cctgaagtga      5760
     acggacgtgc tcgcggagaa ataaaaagta aaaatcatat aaattcggca gcgcgcgcca      5820
     aaacgaaccg aacatagtat atagggacac gattgcaaag tgcaaattgc aatacatatc      5880
     cctcggtttt ttcattcggt ttttcactcg ctcaatacag tggctttttt ttccttgtac      5940
     atatatatag tgcacgtggc ctgctgtgac ttttgcacaa agtgtcgcca cgtggacaat      6000
     ctagaacttt tgctttagtt gttctgctgc gcatcagacg ctggcgcacg gcgtgcaaaa      6060
     acacaaaagt gggttatgta taacaaatac ataactgcct agggccttat atgtactaaa      6120
     attaaccact ataactcata ctctcgtcaa taaatcaata ataattgata taacctaaaa      6180
     taaaattaca ta                                                          6192
//
ID   HETA        repbase;    DNA;    INV; 6081 BP.
XX
AC   U06920;
XX
DT   30-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon HeT-A.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; telomere;
KW   HETA.
XX
NM   HETA.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6081
RA   Danilevskaya O., Slot F., Pavlova M. and Pardue L.M.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres.";
RL   Chromosoma 103(3), 215-224 (1994).
XX
RN   [2]
RP   1-6081
RA   Pardue L.M., Danilevskaya N.O., Lowenhaupt K., Wong J.
RA   and Erby K.;
RT   "The gag coding region of the Drosophila telomeric
RT   retrotransposon, HeT-A, has an internal frame shift and a length
RT   polymorphic region.";
RL   J. Mol. Evol 43(6), 572-583 (1996).
XX
RN   [3]
RP   1-6081
RA   Danilevskaya N.O., Lowenhaupt K. and Pardue L.M.;
RT   "Conserved subfamilies of the Drosophila HeT-A telomere-specific
RT   retrotransposon.";
RL   Genetics 148(1), 233-242 (1998).
XX
RN   [4]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (17-FEB-1994)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
RN   [5]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (11-MAR-1998)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
DR   GenBank; U06920; Positions    1016    7096.
XX
CC   HETA is a telomere specific LINE-like retrotransposon; it forms
CC   tandems and its promoter is located at 3' UTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(719..2158,1879..3492)
FT                 /product="HETA_1p"
FT                 /translation="QKPNMSMSDNLFSDDEVLSISSSPEQRSSPFYLNISP
FT                 MSHGSDNSQINTVIINSKKLPSNQADISLKNSSGAAIKIVNSLSHKKKENT
FT                 NVNNAQKDPLSLTNTTASTCGAKSSISEGKLSSPPSTSHTYEGKLLTKLTH
FT                 THTDFRGAKTSDAMGSFPSLSHSDNSIEKNLSSSTKIGPNASSPPSHAHTH
FT                 TSKSTDISLESRSKHPALANTDARSIKANANDNGEIFSSLIQIDERKQEER
FT                 PCTTINAFWSIFKPKPDVTKLSLKRKPTNPTKNTGKKCISPHKKSAYLCPS
FT                 AQDDLNLNLNPKSSAKPTVVNLPAARILSRPAAKRDLFKSSSSRSPDEQPM
FT                 SFSEVVAGTGSIFAAPCVPAPLTKTPGKRTNDDLDCSNFKTPNKKLCATSN
FT                 FVTPSIFPPLITPVFKSKAAQSVYEESKARNGPPPPALACSINASARSARR
FT                 HPGSPPYPLIIQMQSCLHGKSCPRAVEHLLYSSMMKIMRDFQLCNSQHFSA
FT                 AHHSRFQEQGSSICLRGIQSQKWTPPAGPRLQHQCLCSQRTAPPGIAPLPP
FT                 HNTDAELPPWKIVPQSRRAPPILVNDVKEIVPLLEKLNYTAGVSSYTTRAI
FT                 EGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHST
FT                 PCSWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILS
FT                 LKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLS
FT                 SCCTKPRTTPATCVNCSGQHISAYKGCPAYKAEKQKLAANNVDINKIRTIK
FT                 DATNNFYKRQGPPLRNNTPRLPHSSAILSKSIAEARQEAARKSMLNPFRQN
FT                 INDRRPRFSSHDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSN
FT                 PAQRHLEDYQDMLRRERSEENDQESEKGTPNTKQVGNDSPPTTSRAARASF
FT                 KPRIIDDTTPSPKICNPNSQKGLLDDPTTSLANRVDNLEKKIDILMALIIQ
FT                 GRNNNLDMDTSN"
XX
SQ   Sequence 6081 BP; 2199 A; 1545 C; 1032 G; 1305 T; 0 other;
     aaataaataa aataaattaa acaattaact aaataattaa ataactaaaa ttaataatat        60
     aatccgttcg cttgccaaag actctcacgc gcataactaa ttaaaatcga ttttcaagtt       120
     gacaaataaa tggtttaaaa ttgtcctcag gctgcaaaga aaagccgcgg caacaataaa       180
     catttagtga cacgcgaaaa gcgaacattt gattagtgta atacttgtgc aaaccgacaa       240
     gctgccgcca taacaaaacg gagacgaaga atcataaaga acaaaagcta aatccaccag       300
     catagcaaaa ataaattaac aaataaaata aaagcaaatt taaataacat aataaattaa       360
     acttatttaa taaaccaatt aattttaatt aattcaatta aacgctaaat ctacataata       420
     ctccacgcgc aaattaattg aaatcgtctt tctagttaat aaattaaaag tttaaaaatt       480
     gtctccggcc gcaaaatttg aaccgcgacg ataaaaacat ttaattgaca aacaaaaagc       540
     gaacaattat tcagtgaact atttgtgcaa aattgacaag cagacgccat aattaaaagg       600
     agaagaagcc aaaagacgaa gagaagaaag caaccagaag aactcaaaga agaaaaggag       660
     gaaagcccaa ttaaagaaag ccagggtatt tataccttac acttatcgtt taatataaca       720
     aaaacccaac atgtccatgt ccgacaacct tttttctgac gatgaggtac tttcaatttc       780
     ctcaagccca gaacagcgat cttctccgtt ctacctcaat atatcgccca tgtcccacgg       840
     atcagacaat tctcagatta atacagtcat cattaattcg aagaaattgc cctcaaatca       900
     agcagacata agtttaaaaa actcttctgg ggctgctata aaaattgtta attccctttc       960
     acacaagaag aaagagaaca caaacgttaa taatgcccaa aaagaccccc tctcactcac      1020
     caatactact gcaagcactt gtggcgccaa aagcagcatc tcagagggga aattgtcttc      1080
     tcctccgtcc acctcacaca catatgaggg gaaattactc acaaaactta ctcacacaca      1140
     cacagacttt agaggcgcca aaacgagcga tgcaatggga agtttcccct ctctctcgca      1200
     cagcgacaat agcatagaga aaaatctgag ttcttccacc aaaattggac caaacgcttc      1260
     ttcccctcct tctcatgcac acactcacac tagcaaatcc actgatataa gcttagaaag      1320
     ccgctcaaaa catcccgcgc ttgccaatac ggacgcacgc tctataaaag ccaatgctaa      1380
     tgacaatggg gaaattttct cctcacttat acaaattgac gaacgcaagc aagaggaaag      1440
     gccttgcaca actatcaacg ctttttggtc tatttttaaa cccaagccgg acgttactaa      1500
     actaagtcta aagaggaaac ccaccaatcc cactaaaaac actgggaaaa aatgcatctc      1560
     ccctcataaa aagagcgctt atttatgccc ttccgctcag gatgatttaa atttaaattt      1620
     aaaccccaaa tctagcgcca agcccactgt ggtgaattta ccagctgccc gcatcctaag      1680
     ccggcctgca gccaagcggg atttatttaa atcatcatcc tcccgaagcc cagacgagca      1740
     gcctatgagt ttttcggaag tggtcgctgg cacgggttca atttttgcgg caccctgtgt      1800
     cccggcacct ttaacgaaaa ctccaggcaa gcggacaaac gacgatctgg actgctccaa      1860
     ctttaagacg cccaataaaa aattatgcgc gacttccaac tttgtaactc ccagcatttt      1920
     tccgccgctc atcactcccg ttttcaagag caaggcagct caatctgttt acgaggaatc      1980
     caaagccaga aatggacccc ccccgccggc cctcgcctgc agcatcaatg cctctgctcg      2040
     cagcgcacgg cgccacccgg gatcgccccc ctaccccctc ataatacaga tgcagagctg      2100
     cctccatgga aaatcgtgcc ccagagccgt agagcacctc ctatactcgt caatgatgta      2160
     aaggaaattg tacctctact ggaaaagctg aactacacag caggagtctc cagctatact      2220
     actagggcta tagaaggaaa cggggtcagg atacaggcaa aggacatgac cgcctataac      2280
     aaaattaaag aagtcctggt ggccaacgga cttcctttat tcaccaacca gcccaagtcc      2340
     gagagaggct tccgagtcat catcagacat ctccaccact ccacaccatg ctcgtggata      2400
     gtcgaggaac tgctgaagct cggattccaa gcgcgattcg tcagaaatat gacgaatccg      2460
     gctacaggtg gccccatgcg aatgtttgaa gtggagatcg tcatggccaa agacggcagt      2520
     catgacaaaa tactctcact caaacaaatc ggtgggcaaa gggtggacat tgaaaggaaa      2580
     aacaggacac gggagccagt ccagtgctac agatgccaag gcttcaggca tgccaaaaac      2640
     tcttgcatga ggccgccaag atgcatgaaa tgcgctggcg aacacctgtc ttcctgttgc      2700
     accaaaccaa gaaccacccc cgccacctgc gtaaattgct ctgggcagca tattagcgcg      2760
     tacaaaggat gccctgcata taaggcggaa aaacaaaagc tggcggcaaa caacgttgac      2820
     ataaacaaaa taagaacaat caaagacgca acaaataact tttataaacg tcaaggcccc      2880
     cctctacgca acaacacccc tcggctaccg cacagctcag caatcctgag caaatcaatt      2940
     gccgaagctc gccaggaggc agccagaaag tcgatgttaa atccattccg acaaaatata      3000
     aacgacagaa gaccacgatt ctcctcccac gacacggcca ttcagaagcg tctgaataaa      3060
     tggcgccgaa acaccaacaa aatacccaaa aagggtagga tagccttaaa ggataatgca      3120
     aagccacgac cggcacatag gacaagtaac ccagcgcaaa gacatctgga ggactaccag      3180
     gacatgctcc gaagggaaag gagtgaagaa aacgaccagg aatctgagaa gggcaccccc      3240
     aataccaagc aggtcggcaa tgacagccct ccgaccacga gcagagcagc cagagccagc      3300
     tttaagccaa gaatcattga cgataccacg ccatcgccaa aaatctgcaa tcccaactca      3360
     caaaaaggcc tcttggacga ccccacaaca agcttagcta atagagtcga caatttagaa      3420
     aagaaaattg acattttaat ggccttaatc atacaaggaa gaaataacaa tcttgacatg      3480
     gatacatcca attaatctta caactactta tatattcttt aataaatata tccaatagaa      3540
     aagcgcacgt cggtctgctt ttaaaatcct tcaccgtcat caccttcctc gacggagcct      3600
     aatttattgg aaaaataaat caattatatg ttggcacaaa aatgtaaaca cacactcacc      3660
     taaacgcacc cggacgaaca agcctatgac aacgcactcc agctgatctg taagaaacaa      3720
     aaaatatgaa tagatagatc gatatgaaaa ggatatgtgc ggcagaaaca tgatgagcaa      3780
     aaggcgactc gctgcagcaa cttatgcaca acgtcactta cctgaaattt cttgccgtac      3840
     gatctcctgt agtatccctt atcacagctg caatctactt gcaatgctgc actgcaataa      3900
     acgtactaca aaagctgcat acgttttgat caggacacct cgtgcggacg tgctaaaaaa      3960
     aatttccttt ctgctgctct tattgacgct aaaaccttaa aacctacaaa caaaacaatt      4020
     aaataataac aaatcaaata agacaaccaa ataatacact tacctcattg actgcagcta      4080
     aatcgctgac ccacattcag tgcagccgac agcaggagac gggcccgcaa aagcaaaaca      4140
     aaatcgccaa ttttgcgatt ataaacacga aaaattgaca attttgcgat gccgtctccg      4200
     cctcctgatg ccactgcatt gacaagcatc actagcgagg agctgacacc acaccaaaaa      4260
     gctgtaaaat ccgtccacaa attgtatatt ttgcctcagt gtcgtatctg caatgttttt      4320
     ccgataacct gtaaggaaag aaaaattaat aagaaaatta tacaaaatta attaaggacg      4380
     acagaaaata gcaaaccaga caggcaaatt aacagataca aatatgagac tccatcctgc      4440
     tgccgacaca caagtaaatc cttcaactcg acaacaggag acgggccttg caaaagcaaa      4500
     acaaaatcgc caacttttgc gattataaat acaaaaaatt gacaattttg caacgccgtc      4560
     tccacctcct gttgccactg cattaataag gatcaccagc gcggcgtgac gccacactaa      4620
     aaggctgcaa aatccgtcca caaaatgtat acttttcctc agtacaatac tttctaatga      4680
     acttccgcca acctgcaatg aaaagaaaag aaataggtat ataaaacaaa acaaacaaaa      4740
     ggacaaccta aaattagcaa accagacagg catactagta gatgctaata tgcagctcca      4800
     tcctactgac gacaaccacg caactccttt ctccaagacc gcaaatactg aaacaaggaa      4860
     gcacaagcta atactgggaa ttatttattt aaacaaaaat acttatctaa ttgccaattc      4920
     gacgactcca aatccgcggc taaccggcgg cgatggccca taaataaagg gcctcctaat      4980
     taattacaaa atgtacctga aaaacataaa attaacgcaa ctataattaa cgcaattaat      5040
     aaatcaaata aatacaagta taatacttac ctccaagcaa acgtacctga aaaacaaaac      5100
     caaaaaaaaa attaatgcaa taaataaatc aaataaatac aaacataata cttacctcca      5160
     atttacctcc cagccaatct acctgaaaaa cataatctaa tacaatctca aaaacaaata      5220
     acaaatgtaa tacttaccaa attttaattt tgtattcatt tccatgaccc caacgctgca      5280
     actgtcctcg gcaacaattc ctgttccggc ggctccatgc tgccaatcct gacgcactgg      5340
     ccacaagacg cggcgctgct ggcaatctct cgatgaacaa ccgatctaca atttccatga      5400
     cgactcctct gtcacgatga gacagaagac accaccaacg ccagcagctc caaaacaata      5460
     caacaacggc cgcgcggaac ccatcttcag aattccctct tcctgacgac cggcgaacga      5520
     gttctggaat aaacaatgta ttaattgcaa acatctaccg atgagggtag aagagatact      5580
     caccaaacga ctgcggcgcg ggaacaaact aactgcaacg ccggccggac ctatttgttg      5640
     caagtggcgc gcatccagcg cctgcaacat gccccagccc aagtacacaa ctacttacct      5700
     gcaacgtcgc cagaggctcc cagcgaatcg gtgcttccgt ccttctggcg ggggtacctg      5760
     aaaagaaaca aattaaacaa tattaatcct aaatttcaat gttttttgta aaataattta      5820
     aattgttaaa tgtaaacaag ccttgcaata tgttaatgtt accagtccat gctactgtct      5880
     aaaagccaag aatacaaaaa atactaatta taaactaact caccacgccc aacccccaaa      5940
     ctcaccccat gcaatgttaa acctataaat tcaaataatt gtacctatat attgcacata      6000
     ctgtaatcaa aggcaaaata aatcgtggat gcggaacaga atttactctg tctccgtacc      6060
     tccaccagca aagttaaaaa a                                                6081
//
ID   HETA_DSi    repbase;    DNA;    INV; 3010 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 17.08, Created)
DT   14-JAN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; HETA_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3010
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1646-1646 (2012).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..2963
FT                 /product="HETA_DSi_1p"
FT                 /translation="MSSSDHLFSEDEVLSITSSERSSPIHVNISPMSHGSG
FT                 NSLVNTVNINQKKLPANQKKSPINSSWVAFNFFNSLSLNMKENINAKNAQR
FT                 DPLSITNTAAANVGAKSSISKGKSPSSPPLSSQIHKRNSLPTMTHTNTAAL
FT                 TNTDATQREFKSTTATCTNAAAATNTDTELRGAKPSDAMGNFPSLPHTDSA
FT                 EKNLSSSTKIGRNASSPPSYTHTQINKAAETNLESCSKSPALANSKTQPNK
FT                 ANDIDSGEIAPPLIQINESKQEERPSTTAKAFWSIFNPKPDTSKLSLSKKP
FT                 TIRSVNTGKRSISPHQRSASLRPXAQGDLKLKSNNRSMPTVXNLTTARTLS
FT                 RPAAKRDLFKSPSRSPDEQPMSFSEVVAGTGPIFVAPTVPAPLTKTPAKRT
FT                 NDDLDCSSFKTPNKRLCVTTNFKSPSIFPPLTTPVFQSKAAKSVYEESKTR
FT                 NRLSHQPLPCSTNAPARSATTAPPQNTXAELPPWKLVPLSCRAPPILVDDV
FT                 KEIVPLLEKLNYTAGVSSYTTRATEGNGVRIQAKDMTAYHKIKDVLIANGF
FT                 PLFTNQPKSERGFRVVIRHLHHSTPCSWIVKELLTLGFSARFVRNMTNPAT
FT                 GGPMRMFEVEIVTAKDGSHDKIISLKQIGGQRVDIERKNRTREPVQCYRCQ
FT                 GFRHAKNSCMRPPRCMKCAGDHLSSCCTKPRTTPATCVNCSGEHISAYKGC
FT                 PVYKAEKQKLAANNIDTNKIRTIKDATNNFYRRQGPPPRNNTPRLPHSSAI
FT                 LNRSIAEARQEAARKSVLNPFRQNMNDRRPRFSSHDTAIQTRLNKWRRNTN
FT                 KIPKKGRTTSKNNAKPRLVSKTSNPAQRHLENYQDMLRKQRSEENDQEPEK
FT                 GTPNPMQVSNDSPPTTSRAARASFKPRXIDEATPSPINSNPNLQKGLSDDH
FT                 TTNLANRVDNLEKKIDILLALIIQGRDNNLDMETSN"
XX
SQ   Sequence 3010 BP; 1003 A; 838 C; 554 G; 607 T; 8 other;
     agaaggagga attccaaagc aaatcgacga taaactggag aacactatta aaccaaaaat        60
     ccagggtatt tataccacta caattatcgc aaaaaattta taaattttta aatataaatt       120
     tttaaatata ataaaaaana aaaatgtcca gttctgacca ccttttctct gaagacgagg       180
     tactttcaat tacctctagc gagcgatctt cccctattca tgttaatatt tcgcctatgt       240
     ctcacgggtc cggcaattcc ctggttaata ccgtcaatat taaccagaag aaattgcctg       300
     caaatcaaaa gaaaagccca attaactctt cttgggtagc ctttaatttc tttaattccc       360
     tttctctaaa tatgaaagag aatataaacg ctaaaaatgc ccaaagagac cccctctcga       420
     tcaccaatac tgctgcagcc aatgttggcg ccaaaagcag catctcgaag gggaaatcgc       480
     catcttctcc tccactctct tcacaaatac acaagcgaaa ttcactcccc acaatgactc       540
     acacaaacac agccgcactc acaaacaccg acgctactca aagagagttc aaatccacca       600
     cagcgacctg cactaatgca gctgcagcca ctaatacgga cacagaatta agaggcgcca       660
     aaccgagcga cgctatggga aatttcccct ctctcccaca caccgacagc gcagagaaaa       720
     atctcagctc atccaccaaa attggacgta atgcttcttc ccctccttct tatacacaca       780
     cacaaataaa taaagccgcc gaaacaaatt tagaaagctg ctctaaatct cccgcgcttg       840
     ccaattcaaa aactcaaccc aacaaagcca atgatattga cagtggtgaa attgctccac       900
     cacttataca aattaacgaa agcaagcagg aggaaagacc aagtacaact gccaaagctt       960
     tctggtctat ttttaaccct aaaccggaca cttctaaact cagcctaagc aaaaaaccca      1020
     ccattcgctc tgtaaatact gggaaaagaa gcatttcccc tcatcaaagg agtgcttctt      1080
     tacgccctga ngctcagggt gatttaaaat taaaatccaa caacagatcc atgcccactg      1140
     tggngaattt aacaacagct cgcaccctta gtcggcctgc tgccaagcgg gacttattca      1200
     aatctccgtc caggagccca gacgagcagc ccatgagttt ctcggaagtg gttgctggaa      1260
     cnggtccaat ctttgtggca cccacagttc cggctcctct aacgaaaact ccggccaaga      1320
     ggacaaacga cgacttggac tgctccagtt tcaagacgcc aaataaacga ttatgcgtga      1380
     ccaccaattt caaatctccc agcatttttc cacccctcac cacacccgtt ttccaaagca      1440
     aggcagccaa atctgtatac gaggaatcca aaaccaggaa tcgactctca caccagccgt      1500
     taccctgcag caccaatgct cctgcacgca gcgcaacgac ggcaccccct caaaatacag      1560
     angctgagct gccaccttgg aaacttgtgc cactaagctg cagagcgcca cccatactcg      1620
     ttgacgacgt caaagaaatt gtcccgctcc tggaaaagct aaactataca gcaggagtct      1680
     ccagctacac taccagggca actgaaggga acggggtcag gatccaggcc aaggacatga      1740
     ccgcctacca caaaatcaaa gatgtcctta tagcaaacgg ctttcctcta ttcaccaacc      1800
     agccaaagtc cgagaggggc ttccgagtag taatcagaca tctccaccac tccactccat      1860
     gctcgtggat tgtcaaggag ttgctgacgc tcggattctc agcgcgcttc gtcagaaata      1920
     tgacgaaccc ggctacaggt gggcccatgc gcatgtttga agtggagatc gtcacggcca      1980
     aggacggcag tcatgacaaa attatctcac tcaaacaaat cggtgggcaa agagtggata      2040
     ttgaaaggaa aaacaggaca cgggagccgg tccagtgcta cagatgccag ggcttcaggc      2100
     atgccaagaa ctcatgcatg aggccaccaa gatgcatgaa atgcgctggc gaccacctgt      2160
     catcctgttg caccaagcca agaaccaccc ctgctacctg cgtcaactgc tctggagagc      2220
     acattagtgc atacaaggga tgccccgttt acaaggccga aaaacaaaag cttgcggcaa      2280
     acaacattga cacaaataaa atacgtacaa ttaaagacgc aaccaacaac ttttatagac      2340
     gtcaaggccc tcctccacgc aataacaccc ctcggctgcc acacagctca gcaatcctga      2400
     acagatcaat cgctgaagcc cgccaggagg ctgccagaaa gtcggtgtta aatcctttcc      2460
     gacagaatat gaacgacaga aggccacgtt tttcctccca cgacaccgcc attcagacgc      2520
     ggctgaataa atggcgccga aacacnaaca agatacccaa aaagggtagg acaacttcaa      2580
     aaaacaacgc aaagccaaga ctggtatcca agacaagcaa cccagcgcaa agacatctgg      2640
     aaaattacca ggacatgctc cgaaaacaaa ggagtgaaga aaatgaccag gaacctgaaa      2700
     aaggtactcc aaatcccatg caagttagca acgacagccc tcctaccacc agcagagctg      2760
     ccagagctag cttcaagcca aganttattg atgaagccac gccatcgcca ataaactcca      2820
     atcctaactt acaaaaaggc ctctcggacg accacacaac aaacctagca aatagagtcg      2880
     acaatttaga gaagaaaatt gacattttat tggccttaat catacaagga agagataaca      2940
     atcttgacat ggaaacatcc aattaatcct acatctactt atanttatat taacgatatc      3000
     tatatccgac                                                             3010
//
ID   HETRP_DM    repbase;    DNA;    INV; 1872 BP.
XX
AC   L03284;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster subtelomeric heterochromatin tandem
DE   repeat sequence.
XX
KW   DMHETRP; HETRP_DM; tandem repeat; Repetitive element.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1872
RA   Karpen H.G. and Spradling C.A.;
RT   "Analysis of Subtelomeric Heterochromatin in the Drosophila
RT   Minichromosome Dp1187 by Single P Element insertional
RT   Mutagenesis.";
RL   Genetics 132, 737-753 (1992).
XX
DR   GenBank; L03284; Positions    2372    4243.
XX
SQ   Sequence 1872 BP; 582 A; 388 C; 320 G; 582 T; 0 other;
     ttcggcactg tgttaatttt tgttggctga ttttgtaaga ttatattcga taaaaattga        60
     aaaaagattt ccagaaggat aatgttttaa aaatataatt ttttttatac accggcaaga       120
     acaaaacgat tattaatatt gttatttaat atattattaa tataattgtg tctcatccat       180
     ttcgcgtatt cagtttgtaa tttggtgcgg cagcaagtac ggatcaactc gaccaggtca       240
     aactgactga aggatcttct tacatttccc ttcttcaaca tattctctaa tatctataca       300
     cactgcgttc actacatttt catctccctc taacacacta ttcttgacaa cccgatcgga       360
     cctcacgcag ctgcagaggt tgttcgtgcc ctctgcgcag cgctcgacag aattttactg       420
     aaggaatctt catacatttc ccttcttcaa catattctct aatatctata cacactggcg       480
     ttcactacat tttcatctcc ctctaacaca ctattcttga caacccgatc ggacctcacg       540
     cagctgcaga ggttgttcgt gcctctgcgc agcgctcgac agaattttac tgaaggaatc       600
     ttcttacatt tcccttcttc aacatattct ctaatatcta tacacactgg cgttcactac       660
     attgtcatct cactctaaca cactattcat gacaacccga tcgctgcaga ggctgttcgt       720
     gcctctgccg cagagctcga acgaatttta ccgcaatatt acaattttat aagaatgtta       780
     aattacagaa ggaattccta gaatgcgaac agtcacgctg cgacatatgt gtacgcatcg       840
     ttacattttt gcaatgcttt tacaccaaaa acagagaaaa aaaaaataaa aaatataaat       900
     atttatatat tttatgcaaa aaatataata ataaatataa aaatataatt tcctttatac       960
     accggcaaga aaaaacgatt attaatataa aaaaaaaccc agcaaattta tggataaaca      1020
     acatttgcac aacatatgta aatttcgtag taactagata atacatttta tttatataaa      1080
     tatagatacg cgcatacgga actgggctaa attcgcgtgc aatatgacgc acaagcgaat      1140
     ttcagtccac gcgcagttta ccatagtagc tctgcagcga acgactgcct ctagcagact      1200
     gagctatcag ttgtagcggc ggcgcttata tagtgcccga acaatcgata gtgactgtcg      1260
     ctactggtta tcgtggccgc gttatcgatg tgcgcgcgat atcgatattg ctcaaccttt      1320
     agtgtctctg atattggcgg gcgcgcgatt gagagtgacc gtaccgcatt tgcccttcaa      1380
     gattgtgccc ttgctctatg gtaagtgtga ccaattctgg gctttacttg cccgggtttt      1440
     tttaaattaa aatttctcgg tctgttttgc taactctttc atttcttata ttacggtttt      1500
     ctcttgcccg ttgccattga caatgtacga cagagagagc aagagagata cttggattgc      1560
     ctctcattct ctctctcata atataggcca atagtgttag cgtatgcgag aggagtgtca      1620
     atatactgta ctcttcgatt ttttgcaagc caaaatggcg gcggccgaag tgagagcaat      1680
     atctaggcca ctcctctctc tttagggcgt tggaaattga gtggccatta aaagacatag      1740
     ataaaaaaaa aaacagataa gtttattgaa attcgactac tattaaaatt aaaattgata      1800
     attaagaaat aacaacatat ttcatggaaa aaagaataaa gactcatatg tacaactttg      1860
     ccaaaaatta gg                                                          1872
//
ID   HidaAg1     repbase;    DNA;    INV; 5523 BP.
XX
AC   AB090822;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon HidaAg1 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like; HidaAg1.
XX
NM   HidaAg1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090822; Positions       1    5523.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..1695
FT                 /product="HidaAg1_1p"
FT                 /translation="MSFSSQMQNALGLTRSMSADTSKTSVGKQLPASGIPT
FT                 LRAPMAAGNAGSVVSKTVEDLQRSLAAEKEEKMKLTVLLQELQAQISIMMK
FT                 KSRETKEEARRDKEKAIRHREEYRRDMALIREENTKLLAQLMAMKVVTTTA
FT                 GSIPSASLSQRQQSSPQPSMASVVANGDTASTSHRVTLTQSQYRRAPISNF
FT                 VESDGIWREVTRRKSRRSDNRRNERESTQYQQSVHQPQQSSRDQQHGAQHR
FT                 PQTTRPNRQDIIEVTSFTGKMWYQVYKQIREAPEMEKMNEKLHIGRRTAKL
FT                 NLRMKVARSIDSSEAMARIQGVLRDEGSVRVLTQMTEVIITNVDPLANDGD
FT                 IRSAIGNVTGSASSIATIQLWQLSDGTQRARVCLPLAHAKLIIRLRLKVLY
FT                 TMCAVKEAPHTPIEKLRCYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLA
FT                 ATCEAEVRCASCAGPHRMGSAQCVQSNSQ"
FT   CDS           1695..5213
FT                 /product="HidaAg1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMITLQINISNCSTSQNLMLQAAKEQHADVILVSELY
FT                 RHPPNNGNWAVDSSGRVAVVAAGSRPIQRMWGSAVPGLVAADIGGITFISC
FT                 YASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSARTKRKGE
FT                 ELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASPSIVRYNTWEVL
FT                 KSYWYSDHRYVRFSVDSSSVLGNGIQLHRHQHQLQPQQRRFHRQSPAHRRK
FT                 PRWRRAGRRWKVGQFLPESFCFALEAVHFAEIARTPETLQVALSRACDVAM
FT                 ERVSSSTPYYQTKPQVYWWTPERAQLRELCKEASDNAHSRVDPDERAAASE
FT                 IHQERRSELKRAITTGKGQLFQQQIDEVNANVYGSGYQVVTSHLRGSRTPP
FT                 ELDREVLERIVTDLFPDHNSFDWPMPTETSSEPYHIRPVTDLELERIADDM
FT                 CSRKAPGLDGIPNIALKTAIKKHTAVFRSIYQGCFDRGEFPAHWKIQRLVL
FT                 LQKPGKPPGESSSFRPLGMLNGLGKVLERLILNRLNEFLENGETSHLSPNQ
FT                 YGFRRGKSTVQGILRVVQAGRTAKSFNRTNGRDMRCLMVVSLDVRNAFNTA
FT                 SWKSIAMALRSKEVPASLQKLLQHWMTDRQLVFDTDDGPVTRNLSTGVPQG
FT                 SILGPTLWNVMYDSVLDVQLPEGAEIIAFADDLLLLDPGITPEAASQRAEE
FT                 AVSAVNLWMENHCLELAPAKTELVTISSKRQGNINVPVVINGVERRTTRSI
FT                 RYLGVVIDNQLSWKSHVEYCTTKALRTAKALGCLMRNHSGPKCAKRRLLAS
FT                 VVDSILRYAAPVWHEATKNQECRRMLQRVQKHCAIKVSSAFPTVRYQTAVV
FT                 LASMIPICLLVQEDARCYQRQQEAGGALSAGILRAEERINTMQSWQEEWDA
FT                 DASQADASRFVRWTHRVIPDIAAWHFRRHGEVNFHLSQVLSGHGFFRDDLC
FT                 RMGFTPSPDCIRCTGVPETAEHAMFECPRFAEIRQKLLGEANTDAITPETL
FT                 QFHLLQSQEKWSRIAEAAKQITSALQRDWNEERARLAVSSTLSPSHPVGPS
FT                 DRNQVIAARRERRNARRRERRAREREAQQQNPSLVFSASSEATEGRESAHP
FT                 ERREQVRPQRRIRQHMPQQKEVVELSDVTQYATAISEDVYSSNPIQGGLTA
FT                 AESAVATETEISSR"
XX
SQ   Sequence 5523 BP; 1524 A; 1292 C; 1438 G; 1269 T; 0 other;
     gaagaggttc ccgaaggggt gacgtgtcaa cagtccaggc agaggagctc cgtgtttttc        60
     ttccagattt tgttgtaaaa agacgcaaga agataggcat tttataagat aacagcagtt       120
     aatcgcgttt acacttgaac cagtgtcata cgacagatta gggtgctgct acactccgcg       180
     aattttatgc acacacatcg aaatgacagc cacacagcag ctggaggcag ttaatgtttt       240
     ctccacaaag gggagcaagt ttcggtggta aagatgagtt tttcatctca aatgcagaat       300
     gcgctcggat tgactcggag catgtcagcg gatacatcaa aaacaagcgt ggggaagcag       360
     ttgcctgctt ctggaatacc aacactacgc gctccaatgg ccgctgggaa cgctggctct       420
     gtagtctcca agacagtgga agacttacag cggtcgctag cagcagagaa agaggagaag       480
     atgaagctca ccgtgctttt acaggaacta caagctcaaa ttagcattat gatgaaaaaa       540
     tctcgagaga cgaaggaaga ggcacgtcgt gataaagaaa aagccatcag acatcgtgag       600
     gagtaccggc gcgacatggc actaatccgt gaggagaata cgaaactcct ggcccaatta       660
     atggcaatga aggtagttac aacaactgca gggagcattc catccgcttc cttatcgcag       720
     aggcagcaat cttcaccgca gccctctatg gcatcggtag tggcaaatgg ggacacagcg       780
     tctacatcac accgggtgac gctgactcaa agccagtata ggagggcacc aatttctaat       840
     ttcgtggaat cagatggtat ttggcgcgag gtgactcgac gcaagtcacg tcggtctgac       900
     aatcgccgga acgagaggga atctacgcag tatcaacaaa gcgtgcatca acctcaacaa       960
     agttcccggg accagcagca tggtgcgcaa catcgacctc agacgacacg tccgaaccgg      1020
     caagacataa ttgaggtaac atcatttaca ggtaaaatgt ggtatcaggt gtacaaacaa      1080
     atacgcgaag cacctgaaat ggagaagatg aacgaaaaat tgcatattgg tcgtcgtaca      1140
     gccaagctca atctacgcat gaaagtggct cgtagcattg acagttctga ggcgatggca      1200
     cgcatacaag gagttctacg agatgaaggc tcagtccgtg tactcaccca gatgactgag      1260
     gtcatcataa cgaatgtaga tcccttagca aatgacggag acattcgaag cgccatcggg      1320
     aacgtgacag ggtctgcttc gagcatcgcg actatacaac tatggcagct gtcagatggt      1380
     actcagaggg cacgagtttg cttgcccctg gctcatgcaa aactaataat tagactgcgc      1440
     ctaaaggtgt tatacaccat gtgtgcagtg aaagaagctc ctcacactcc catagagaaa      1500
     ctgcgttgct atcggtgttt ggaaaggggc catgtgtcgc gagactgtca cagcccagtc      1560
     aatcattcga acgtatgtat ccgctgcggt actagtggtc acttagcggc cacctgcgag      1620
     gcagaagtac gttgcgcttc ttgtgctggc ccgcatcgta tgggcagtgc tcaatgtgtt      1680
     cagtctaatt ctcaatgatg attacgctgc aaattaatat ttcgaactgt agtacttcgc      1740
     agaatcttat gcttcaagca gcgaaggaac aacatgctga cgtgatactg gtatcggagc      1800
     tataccgaca cccaccaaat aatggtaatt gggcggtgga ctcatcggga agagtagcgg      1860
     tggtagctgc tggatctcga ccaatccagc ggatgtgggg cagcgctgta ccgggtctag      1920
     ttgctgctga cattggtggt ataaccttca tcagctgcta tgcttctcct cgaatgactg      1980
     ttgctgagtt tgaggaattc cttaacgcag ttgaaatcga agtaagtgcg caccctaacg      2040
     tagtgctagg aggggatttc aacgcctggc acgaggcttg gggaagcgct aggacgaagc      2100
     gaaaaggcga ggagctgctc aataccgtcg aacagctcgg gttaatagtg ctaaaccgtg      2160
     gtaatacctc aactttcacc ggacgaggaa tcgcaggaga aagcgtgata gacgtgactt      2220
     ttgcaagccc atcgattgtg cgctacaata catgggaagt gcttaaaagt tattggtata      2280
     gcgatcatcg ttatgtccga ttttctgttg acagctcatc tgttttaggt aatggtatac      2340
     aacttcatcg tcatcaacac caacttcaac cacagcagcg tcgttttcat cgacaaagtc      2400
     ctgcacaccg acgaaaacct cgctggcgcc gcgctggccg acgatggaag gtggggcaat      2460
     ttctaccgga atctttttgt ttcgctctcg aagcagtcca cttcgcggag attgcaagga      2520
     ctcccgagac acttcaggtg gctctctcta gggcgtgtga tgtagcaatg gaacgcgtca      2580
     gttcatcgac accctactat caaacaaaac ctcaggtata ttggtggacg ccagagagag      2640
     cacaattacg tgagctctgc aaagaggcta gcgacaatgc ccattcacgt gtggaccctg      2700
     atgagagagc agcggcatcg gaaattcatc aagagaggcg aagtgagctg aaacgtgcca      2760
     taactacggg gaaggggcag ttatttcaac agcaaataga cgaggttaat gcgaacgtgt      2820
     atggttcggg ttatcaggtc gtcacctccc acttgcgcgg tagtcgcact cctcccgaat      2880
     tggatcgaga agtgttggag cgcatagtca ccgacctgtt tcctgaccac aattcattcg      2940
     attggcccat gcctacagaa acctcatccg aaccttatca catccgacct gtgacggatt      3000
     tagagctaga acgtatagct gacgatatgt gctcgagaaa ggcacctggg ctggacggca      3060
     ttcctaatat cgctctcaag actgccatca agaaacatac agcagtgttt cgttctatct      3120
     atcaaggctg tttcgatcgc ggcgaattcc cggctcattg gaaaattcag cgtttggtgc      3180
     tactgcagaa acccgggaag ccaccgggag aatcttcatc cttcaggcct cttggaatgt      3240
     tgaatgggct tggaaaggtg ctagagcgcc ttattctgaa ccgtctaaat gagtttcttg      3300
     agaacggtga gacttcccat ctttccccaa accagtacgg cttccgtcgg gggaaatcga      3360
     cggtgcaagg tatcctgaga gtagttcaag ctggaagaac cgcgaaatct tttaatagaa      3420
     caaacggacg tgacatgcgc tgtttgatgg tggtttcctt ggatgtgcgg aatgcattta      3480
     atacggcgag ctggaaatcg attgcaatgg cgctaagatc caaagaagtc cctgcttctc      3540
     tacaaaagtt actgcagcat tggatgactg atcggcaact tgtttttgac accgatgatg      3600
     gccccgtaac gcgaaatttg tctacaggcg ttccacaggg gtccatattg ggccccacat      3660
     tgtggaatgt tatgtatgat agtgtgctgg acgtacagtt gcctgaagga gcggaaatca      3720
     tagcctttgc cgatgatctg ttgttattag atccgggaat tactcctgaa gcggcttcgc      3780
     agcgtgcaga agaagcggta tccgcggtta atctttggat ggaaaatcat tgcctggagc      3840
     tggcgccggc caagaccgaa ttggttacaa tctcgagcaa aaggcagggc aatataaacg      3900
     ttccggtggt catcaatgga gtggagcgga gaacgacccg aagtattcgc taccttgggg      3960
     tcgtgatcga caaccaattg tcttggaagt cgcatgtaga gtattgcacg acgaaagcgc      4020
     ttcgaacagc aaaggcgctt gggtgtctta tgcgcaatca cagtggcccc aagtgtgcaa      4080
     aacgacgtct tctggcatcc gtagtagact ccatccttcg ttatgccgcg cccgtttggc      4140
     atgaagctac caagaatcag gaatgccgga ggatgctgca aagggtgcaa aaacattgtg      4200
     caataaaagt gtcaagcgca tttccgacgg tacgttatca aacagctgtt gtgctagcca      4260
     gcatgatacc tatctgtctg ttggtacaag aagacgctcg atgttaccaa cgacaacaag      4320
     aggcgggagg agccctttcg gcagggatac ttcgagcaga ggagcgcatc aacaccatgc      4380
     aaagctggca ggaagaatgg gacgcggacg caagtcaagc tgatgccagc agattcgtgc      4440
     gatggacaca tcgtgtcatc cctgacatcg cggcatggca tttccgaaga cacggagaag      4500
     ttaacttcca tttgtctcag gttttgtccg gtcatggctt tttccgtgac gacttgtgtc      4560
     ggatggggtt cacaccgtcg ccagattgca tcaggtgtac gggtgttcca gagactgccg      4620
     agcacgcaat gttcgagtgc cccagatttg cggaaatcag acaaaagctg cttggtgaag      4680
     ccaacactga cgcgattacg cccgaaacac tgcagttcca tctcctacaa agtcaagaaa      4740
     aatggagcag gatcgctgaa gctgcgaagc agatcacctc cgcattgcag cgggactgga      4800
     acgaagaacg agcgcgtctg gcagtttcca gcacattatc accctcgcat cctgttggac      4860
     caagcgatag aaaccaggtc attgctgcaa gacgtgaacg ccgcaatgcc aggcgccgtg      4920
     aacgaagggc ccgtgagagg gaggcacagc aacaaaaccc atctcttgtc ttttcagcgt      4980
     cttcagaagc aacagaaggg cgcgaatcag cccacccaga acgcagagag caggtacgac      5040
     cacagcgcag gatcaggcaa catatgccgc aacaaaaaga ggtagtcgag ctttcagacg      5100
     tcacccaata tgcaacagct atcagtgagg atgtctactc ctccaaccct attcagggag      5160
     gacttacggc ggcagagtca gcagtggcta cagaaaccga aatatcctct cgctaatcgg      5220
     tgacacaaca acaaatcgga agctccttca gactcgtcag tgtcctgttg gaattgggtt      5280
     ggatagattt gtatttttct ttatttttgt cttaaaaatc attttgcttt attttgtttc      5340
     gaactatcaa atagttatta ttaatgtaat acacacacaa gagaactgct atgacggcat      5400
     tacaaaatcg cacttactaa ccctcgcggg aattgcatgt tgcgaaaggc gagggagggt      5460
     tattctactt tgtttgtata aaataatacg aaataaatct cccgacattt atattaaaaa      5520
     aaa                                                                    5523
//
ID   HMSBEAGLE_I repbase;    DNA;    INV; 6529 BP.
XX
AC   AC004563;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   06-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   HMSBEAGLE_I is an internal portion of HMSBEAGLE retrovirus-like
DE   element from Gypsy superfamily.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   gag-like; pol; internal portion; HMSBEAGLE_I; DMLTR5.
XX
NM   HMSBEAGLE_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Snyder P.M., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.
RA   and Davidson N.;
RT   "A transposable element that splits the promoter region
RT   inactivates a Drosophila cuticle protein gene.";
RL   Proc. Natl. Acad. Sci. U.S.A 79(23), 7430-7434 (1982).
XX
RN   [2]
RP   1-6529
RA   Kapitonov V.V. and Jurka J.;
RT   "HMSBEAGLE_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   GenBank; AC004563; Positions   14375   20903.
XX
CC   HMSBIGLE_I is an internal portion of HMSBEAGLE Gypsy-like
CC   LTR-retrotransposon which is an active mobile element.
CC   LTR of HMSBEAGLE retrotransposon is listed in Repbase Update
CC   as DMLTR5 [1]. The internal sequence has been found by [2]
CC   in GenBank sequence AC004563.
CC   HMSBEAGLE generates 4-5 bp-long duplication of the TATAT-like
CC   target-site upon its integration into the genome.
CC   HMSBEAGLE_I internal sequence encodes gag (position 1260-2663)
CC   and pol (position 2603-5782) polyproteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           1260..2660
FT                 /product="HMSBEAGLE_I_1p"
FT                 /translation="MANPNNIIRPSAFSSNERPVPSERHDLPEQHRVDMSV
FT                 EQLTALIGQTVAQVLPGLIKQMNNNTLDFTDVSDQVVEPEYRNNLADFDRV
FT                 PDIVKSIREFSGNPAEFGSWKKSVDRIMETYTPFVGTPKYYGILHTIRNKI
FT                 VGSADVALESYSIPLDWKAMSRCLTLHYADKRDITTLEYQMSTLVQGHQQS
FT                 VEDFHQDVYKNLSLILNKVGCMQMSRESEHFVTKMYREKALDTFIRGLRGD
FT                 LPRLLAIKEPADLPSALHYCLKLENQTFRSNHAANKGQQSSFRGNEKPIPA
FT                 PRNFQPSNAFGHRQPPPVPPRHPMRRPPQYLGQPFPAPRQHVSNFGNAPFI
FT                 PPRQNYQQQWQQYNAPPRPFATKPQPRPEPMDVDGSVQTRNINYMNRPHSD
FT                 INKRQKNYNIQTVNMRQPSIEVTGSSSSMTGYQRSMQDYETQNNINGTLNE
FT                 YCDGQIDNLDSEQRDHVLHFLE"
FT   CDS           2930..5779
FT                 /product="HMSBEAGLE_I_2p"
FT                 /translation="MKGMGAQIDLKNLTMTLENGKRVVLKEKQFEAVSTIS
FT                 PRIKHLEVEQRMILNKIIDSYPGLFADPNQKLTYTTSVRAAIRTISDTPIY
FT                 SKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGKK
FT                 KYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQIL
FT                 LKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALDDILHEHIGKICF
FT                 IYIDDIIIFSKDDETHYQNLDTIFRTLQQANMKCQLDKCEFMKRKVEFLGF
FT                 VVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNYAKLAK
FT                 PLSSLLRGEDGRISRTLSSKKSVSLNREAIEAFKKLKSSLVSPDVILHYPD
FT                 FKKEFHLTTDASNFAVGAVLSQENRPISFLSRTLSKAEENYATNEKEMLAI
FT                 IWALKKLKIYLYGKAKVKIFTDHQPLTHSLSSWNGNARIKRWKAYLEEYDY
FT                 EIFYKPGRENTVADALSRGPTVEQINTVASTMHSSDSSSHGLIPSVEAPIN
FT                 AFKNQIFFRESESENYSFSIPFPTFQRHLVDRNLFTPDSLLSDLKEYLNPS
FT                 VINGIFTSEDVMGKIQILYPIHFQGFKIRFCQSKVKDLVNEAEQEEEILRT
FT                 HNRAHRNAVENKAQLSERVYFPKMRKKVSAIVNQCLVCKTAKYDRHPTHPE
FT                 IRQTPLPEYPGQIIHIDIYSTERHLVLTAIDKFSKLAMGRVIKSKAVEDIR
FT                 KALRDIVFYYGVPKLIVMDNEKSLNSASIKFMLTDQLGIELYKAPPYKSTV
FT                 NGQIERFHSTLSEIMRCLKGDGTHRGFEELLDRAIYEYNYTVHSVTKKRPL
FT                 EVFFGRIATVAPEKYEQARLDNIDRLRQKQETDIEYHNRTRKPIKTYIKGQ
FT                 EIFVRVNTRLGSKLSSRFRKELVKEDRSTTILTESGKLVHKSNIRS"
XX
SQ   Sequence 6529 BP; 2353 A; 1336 C; 1247 G; 1593 T; 0 other;
     tggcgcccga acagggacca gcgaataaac gcgaacgaaa gacaaaattc taagtcgcgg        60
     agcaaaatca aaattttgct aaaaaatatt cgttggttaa attgtgccga agaaactccc       120
     gcgagttatt aacaaacaaa attcacggtc ggctataaaa taaaattgtt tgagaaaaaa       180
     acagattttc cggaagagga aaatacttat cggcatagca ttgcccattg gtggatcaca       240
     gtttctgtca ggccagcccg cagaaaacct tctttggagt gctgacgtgg attccccagt       300
     agcccaggca aaaaggacaa cattcaccca gccaggagga gtgaccgcaa caattctatg       360
     ttaaataaat gcaaaacgaa gaacagcaat ttcatcgaaa aggagaagga aaagtagaag       420
     tagaacgccg agaataacgg aactacagaa gagcaacacg gataacagtt aacagtgcaa       480
     cccaaaacgt aacggcagag gtaaagacga cgaacggcag agaacggctg cgtgaaccaa       540
     agtgcagaca agaaggaaaa aaaaagaaca acaacagcac agccgtagca gcagcagcag       600
     cccgccaaaa agaacaggaa taagaacacg ttgacgacga agaagctgaa gctgaaacaa       660
     ccgaagagga ggcagagaga ctacaagaac ctggaaagta cactggaaaa aacatcagca       720
     atttgaaatt caggcatcca cccataataa aacataagta taccaaaaaa aaaaaaaaaa       780
     aaaaaaattt taagtatatt attattatta tattattatt ataatattat tattattatt       840
     atatttttat tattatatta ttagtattat attattatta ttatattatt attattatat       900
     tattattatt acattattat tattatatta ctattattat tttattatta ttattgatat       960
     tattattaat actatatttt caacccagtt cctagagatc ttctgaaagg aaaattttcc      1020
     tatttactgt tcctttctgg tacactgttc tcaaagcaaa ataaccgcgg tgagctaaaa      1080
     tttattgcat gcaaaaataa aaaaaaaaaa atataaaaat aaaaaataaa aaaacaaaaa      1140
     caaaagataa ataagcaaac acatacacac gcattccata ttttctgccc acaacttttg      1200
     ttaagttcaa attggtttag gcttgttttg tgcaggtgtt gtccgaatta aaaatcagta      1260
     tggcaaatcc taataatata ataagaccat cagcttttag ttcaaacgaa agaccggtgc      1320
     cctcagaaag acacgacctg cctgaacagc atcgcgtaga catgagtgtc gaacagttga      1380
     cagcattaat tggccaaacg gtggcccaag ttttacctgg attgataaaa caaatgaaca      1440
     acaatactct tgactttact gacgtgagcg accaggtcgt cgagcccgaa tacagaaata      1500
     atttagcgga ctttgacagg gtgcctgata tcgtaaaatc gatcagggaa ttctctggaa      1560
     atccagcaga attcgggtct tggaaaaaga gcgttgatag aatcatggag acttataccc      1620
     catttgtggg tactccaaaa tattatggta tacttcatac cataagaaat aaaattgttg      1680
     gaagtgctga tgtggcactc gagtcctaca gcattccgct ggactggaag gccatgtcga      1740
     gatgtctcac tctgcattac gcagataaac gggacataac taccttggaa taccaaatgt      1800
     caactttggt tcaaggccac cagcagtcgg tggaagactt ccaccaagac gtctacaaaa      1860
     atctgtcgct tattctaaat aaagtcggct gcatgcaaat gagccgagaa tccgagcact      1920
     ttgttacaaa aatgtacaga gaaaaagctc tggatacttt tatcagaggc cttcgaggag      1980
     atttacctcg ccttttggca ataaaagagc cagctgatct cccctcagct ttacattatt      2040
     gccttaaact tgaaaatcaa actttcaggt caaaccatgc ggcgaataag ggtcaacagt      2100
     cgagtttcag aggaaacgaa aaacccattc cggcaccccg caattttcag ccgtcgaatg      2160
     cctttggcca tcgacagcct ccaccggtcc ctccacgaca tcccatgagg agacctccac      2220
     aatatttagg ccagccattc ccggcgccaa ggcaacacgt gtctaacttc ggtaatgcac      2280
     cgttcattcc accccgacaa aactatcaac agcaatggca acaatacaat gccccacccc      2340
     gtccctttgc gaccaaacca caaccaagac cagaaccaat ggacgtggac ggcagtgtac      2400
     agacgcgaaa cattaattat atgaatagac cacactcgga cataaacaaa cgacaaaaga      2460
     actacaacat ccaaacagtg aacatgagac agccaagtat tgaagtaact gggtccagtt      2520
     caagcatgac aggctatcaa cggtcgatgc aagattatga aacccagaac aatataaacg      2580
     gcacactaaa tgaatactgt gatggacaaa tagacaattt ggacagcgaa caacgagacc      2640
     acgtgttgca ttttttagag tagaagactc ctcactacca tacttcgaat gtagagtggg      2700
     gagtggaaag gttttaaggg tgttgattga cacaggctct aataaaaatt acatccagcc      2760
     caatttggtg acgaacgcga taccaaataa caagccttac atagctgata ctccaggcgg      2820
     tgatgtaaaa atatcgcatt acaaaagagc aagccttttc gatttcgaaa taaaattttt      2880
     tttgttacca acgctgaaga cttttgacgc catacttggc aaagacacaa tgaagggaat      2940
     gggagcgcaa attgatttga agaacctaac catgacactg gaaaacggga aaagagttgt      3000
     tctcaaagaa aaacagttcg aggctgttag cacaattagt ccgagaataa aacacttaga      3060
     ggtggaacag agaatgatat tgaataaaat aattgattcg tatccaggtc tcttcgcaga      3120
     cccgaatcaa aaactaacct acacaacaag tgtaagggca gcaatccgaa ctatatcgga      3180
     tacgccaata tactcaaaat tctatcagta cccaatgtct cttaaagacg aggtacacaa      3240
     acaaatttcc gaacttttac acgatggaat cattcgaccc tcaaggtcac cttacaattc      3300
     accagtgtgg attgtaccaa aaaaactcga ctcctctggc aagaaaaaat acagggtggt      3360
     aattgactat cgaaaactta acatggtaac ggtagcggac agatacccta tccctgacat      3420
     taatgaagtg ttggcccaat tgggagacaa caagattttc tcagtgctcg atctgaaaag      3480
     tgggtttcat cagattcttt taaaggaatc tgatatcgaa aagaccgcct tctccatcaa      3540
     taatggaaaa tatgagttta cacgactccc attcggtctg aaaaatgcac cgtcaatttt      3600
     ccagcgcgca ctggacgata ttcttcacga acatatcggt aagatatgtt tcatttatat      3660
     tgacgacatc atcatcttta gtaaagatga tgaaacacat taccagaacc ttgacactat      3720
     tttcagaact cttcagcaag ccaacatgaa atgtcagttg gataaatgcg agttcatgaa      3780
     gagaaaagtg gagttcctag gcttcgtcgt gtccgacaag ggcattgaaa ccagcccaac      3840
     caaggtacag gcaatctcag actttccaat tccaaggaca ctcaaagaac tgagatcatt      3900
     cttgggatta tccggatatt acaggcgatt tattcctaac tacgctaagt tagcaaaacc      3960
     acttagctcg cttttgagag gggaggatgg tcgaatttcc aggacattat cgtcaaaaaa      4020
     atccgtctcc cttaatcgcg aagcaataga agccttcaag aaattgaaga gcagcttggt      4080
     ttctccagac gtaatactcc actacccgga ctttaagaaa gaatttcacc taacaacgga      4140
     tgcttccaat ttcgcagtag gtgctgttct ttcacaagag aacagaccca tctcattttt      4200
     atcgagaaca ctctcgaagg cggaagaaaa ttatgccacg aatgagaagg aaatgttagc      4260
     cattatctgg gctctaaaaa agctaaaaat ttacctttac ggtaaagcaa aggtgaaaat      4320
     ctttactgac catcagcctt tgacccattc tctcagtagt tggaatggaa atgcgaggat      4380
     taagagatgg aaagcatacc ttgaggaata tgactacgaa attttctaca agccaggcag      4440
     agaaaatact gtagccgacg ctctgtccag aggaccgaca gtcgaacaaa ttaacacagt      4500
     agcctcaaca atgcacagct ctgacagttc gagccatggg ctgataccta gcgttgaagc      4560
     cccgataaac gcattcaaga atcaaatttt cttcagggag tccgagtcag agaactactc      4620
     atttagcatt ccattcccga catttcaaag gcatttagta gatcgcaact tgttcacacc      4680
     cgatagtctc ttgtcagatt tgaaagaata tcttaaccca tccgtgatta atggaatttt      4740
     cacatccgag gatgtaatgg ggaaaattca aattctctac cccatccatt ttcagggttt      4800
     caagattaga ttctgccaaa gcaaagtcaa agaccttgtt aacgaagccg aacaagagga      4860
     agaaatactt aggacacata acagagcaca cagaaatgct gtggaaaata aagctcagtt      4920
     gtccgaaaga gtatactttc ctaaaatgag gaaaaaagtt tcggctatcg tgaatcagtg      4980
     tttggtgtgt aagactgcta aatatgacag acatcccacg catccagaaa taagacaaac      5040
     tcccttgcca gaataccccg gacaaattat tcatattgac atctactcga cagaacgaca      5100
     tctggtgctc acggcgattg ataaattttc caaactggcc atgggaagag ttatcaaatc      5160
     caaagctgta gaagacatta ggaaagccct aagagatatc gtgttttatt atggagtgcc      5220
     taaattaata gtaatggaca atgaaaagtc cctcaactca gcctctatca aattcatgtt      5280
     gacagaccag ctgggtattg agctctacaa agcacctccg tataagagta cagtaaatgg      5340
     acagatagaa agatttcact ccacactctc tgaaataatg agatgtttga aaggagatgg      5400
     aacacatagg ggcttcgagg aacttctcga tagggccatc tatgaatata actacactgt      5460
     ccattctgtc acaaaaaaac gacctctaga ggtgttcttc ggcaggatag ctaccgtagc      5520
     tccagaaaaa tatgaacaag ctagactgga caatatagac cgacttaggc aaaaacagga      5580
     aaccgacata gaataccaca accggacaag aaagcccata aaaacctata tcaaagggca      5640
     agaaattttc gttagggtta atacaagatt aggttctaag ttatcaagta gatttaggaa      5700
     ggaactagtt aaggaagacc gaagtaccac aatattaaca gaatcaggga aattagtaca      5760
     taaaagtaac ataagatcat gattgcttca gaacaattac tgtggccaca tcgatagaca      5820
     agtagaacat agaaacatta aacatactga ttaacgtaac cacgagaatt aaatttgaaa      5880
     cgattcgact ttgacagacg agttggccat aggtttgcag aattagattg ggctcgtgaa      5940
     agaagagatt gcgttgtgaa tgcgtttctg cggagcgagt ttaaattgaa tgagaccagt      6000
     agcctacttg aaaacaatat accgatttct gccttgacgg tcaaataaat gttaaaactt      6060
     tcacacgttc tcgctttaca caacggaact acaatttgaa tgccattgaa atctccatat      6120
     tgaatcagtt aattccttat ttcttatatt ttaaaacatg atcagtaaag gaaactaata      6180
     ataataaata aataataatt taatttgaat aataataaaa tttaccaatt aaagacgaaa      6240
     tgtacggaat caatgccttc tgcaaaggtt ccaatggtct aaaaatatgt agatataaat      6300
     tcattagtaa tttagtaaaa accagaattt taatagaagc aatcaagttg tcaatgcaga      6360
     acacatccga gttgcacaaa cctcgaacgc acgcaacaat aaacacctgg cattcaaacc      6420
     attaatgctg tgcccaaact accacgaatc accccaccaa cgatgcgact caaaaacatc      6480
     ccatccttat gatgaccgct cgaggacaag cgtcaattaa gaggggagg                  6529
//
ID   Hoana1      repbase;    DNA;    INV; 3520 BP.
XX
AC   .
XX
DT   20-SEP-2009 (Rel. 14.09, Created)
DT   21-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoana1.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3520
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           667..2490
FT                 /product="Hoana1_1p"
FT                 /translation="MEETNEIIERKIASGAYTLSGQRKGRSSLWNILSEIV
FT                 NEADENVPGFVFCRTCAAVLKYKNGQTSNLHRHKCCKNLKKTVTFAQISAE
FT                 DKTLATKICANWVAEDCRPFTVVKGGGFKKMVKFLIQIGARYGENIDVDDL
FT                 IPDPTTVSRNVTKAAHEKKKELSEEIEEVVRSGGASATIDLWTDNYVQRNF
FT                 LGVTFHYIYNQKFHDVVIGMKSMDFQKTTSQNVYTKLKSVFDQFGVDNIER
FT                 IKFVTDRGANIIKALENNTRINCSSHLLSNALEKSFSEAVDLSENLEACRK
FT                 LTKFFKKANMQHLLKTTLKSHCQTRWNSNYRMVKSILENWADINQILTAKN
FT                 ESNRLLKINLTTVKSLVDLCENIEIVFKKLQETQSPSLCYVIPSITKLKQI
FT                 LRPNDDEAENIESLKKYLVKNIENIWMENLSIYHRVAFFLYPPANNLQPSD
FT                 TIEIINFVVSLIGSNSVQTNLNGVGSPSSTVSFDSFNIIFNEFDNVVDPQP
FT                 SSSSDAFFFQDLLEKTTRKKIETSYEEVLRYSRELIDMSHNFNLLEWWENN
FT                 KKIFPNLYKVALQVHSIPASSAAAERSFSLAGNIVTEKRNRIAPGGVDSII
FT                 FLNSIQRNDL"
XX
SQ   Sequence 3520 BP; 1200 A; 576 C; 638 G; 1106 T; 0 other;
     cagagaactg cacgaatcac attttttttg ttcatactcg agtaatgata ggttactctg        60
     attgatttta aaatttgatt catgtgaaca gagcgatccg aatgcttcgt gtcaatgatt       120
     tggaacaatt ttgaatcact atcgcatcaa ttgggaatga tttgttttga tttgttcaga       180
     agcaaagcaa tacccgaaaa tgatgtaaaa tcatacacat atgattgatt ctgattcgcc       240
     tgctgagctt aatgagcttt aatctggagc cttttgaggc tgtatctgga gcctatatga       300
     ggcttaatat atttataagg ttacgtggaa atttggttaa aagcaacgcc ataaataggg       360
     taatcaaaat ttggtcaaga ggataataaa ataataaata aatattaaac aattggcttt       420
     gtaacataat ctttctcggt gtggagcaac ctgacttata gctatgcgcg tttgaaaatg       480
     tcgccagtat gttgggctga tttttaattc caccttattt cattattaat caattaattt       540
     aaaaccatgt ttcgagacta ccaaatcttt aattgaaaca aaataatcga tttttttgta       600
     ccatataaaa atttgtgcca tcactacttg ttactcatta ctttcaaata gtattctcta       660
     ataaaaatgg aagaaactaa cgaaataatt gaaagaaaaa ttgcgagcgg agcttatacc       720
     ctcagtggcc aacgaaaagg acgtagttcc ctgtggaaca tattatccga aatagtaaat       780
     gaagcagacg aaaatgtgcc aggatttgtt ttttgccgta cctgtgcagc tgtgcttaag       840
     tacaaaaacg ggcaaacatc taatttgcac aggcataagt gctgcaagaa tttaaaaaaa       900
     acagtaactt ttgcacaaat atcagctgaa gataagactt tggccacaaa aatctgtgca       960
     aattgggtgg cagaagactg tcggccattt actgtagtca aaggaggagg gtttaagaag      1020
     atggttaaat tcttaataca gattggagcg agatacgggg agaatattga tgtggacgat      1080
     cttattcccg acccaacaac agtgtcacga aatgtaacga aggcagcaca cgagaaaaaa      1140
     aaggagcttt cagaggaaat tgaagaagtt gtgcgcagtg gaggagcatc cgcgactatt      1200
     gacttgtgga ctgacaacta cgtccaacga aattttttgg gagttacctt ccattacatt      1260
     tacaaccaaa aattccatga tgttgtcatt ggtatgaagt caatggattt ccaaaaaacc      1320
     acaagccaaa atgtgtacac aaaacttaaa tcggttttcg accagttcgg ggtcgacaac      1380
     atagagcgca tcaaatttgt aaccgatcga ggggcaaata ttataaaggc tctcgaaaat      1440
     aatacaagaa ttaattgtag cagccacctg ttgtctaatg cactagaaaa gtcattttcg      1500
     gaagctgtgg atctatccga aaatttagaa gcatgcagaa aactgacaaa attttttaaa      1560
     aaagcaaaca tgcaacattt attgaaaacc accttaaaaa gccactgcca gacaaggtgg      1620
     aactctaact atagaatggt aaaatctatt ttggaaaatt gggctgatat taaccaaatt      1680
     ttaacagcga aaaatgagtc gaacagactg cttaagatta atttgaccac tgtcaagtcc      1740
     ttggtagatc tttgcgaaaa cattgaaatt gtttttaaaa agctgcaaga aacacaatcc      1800
     ccgtcacttt gctatgtaat accgtctatt acaaaattaa aacaaatttt acgcccaaat      1860
     gatgatgaag ctgagaacat agaaagctta aaaaaatact tggtaaaaaa tattgaaaac      1920
     atttggatgg aaaatttatc aatttaccat agagtagctt tttttttgta cccaccagct      1980
     aataatttac aaccttcgga tacaattgaa attattaatt ttgttgtatc attaatcgga      2040
     tcaaactcag ttcaaacgaa ccttaacgga gtgggaagtc cttcatccac agtttcattt      2100
     gattcattta atataatatt caacgaattt gacaatgttg tcgatcctca gcccagttcc      2160
     tcaagtgatg cttttttttt tcaagactta ttggagaaga caactcgtaa aaagatagaa      2220
     acttcctatg aagaggtact tcgatattca agagaattaa ttgatatgtc gcataatttt      2280
     aatttattgg agtggtggga aaacaataaa aaaatatttc ccaacttgta caaagttgcg      2340
     cttcaagttc actctatacc agcaagcagt gcagcagcag aaagatcatt ctcattagca      2400
     gggaatatag ttacagagaa acgtaacaga attgcgccag gcggtgttga cagcatcatt      2460
     tttttaaatt ccattcaaag aaatgattta taatgtcttg ttattaaaac gcacacatat      2520
     attttaaaaa tgattttttt gtgttattat ttcattattt gtatctatta tattatctat      2580
     tattattatc tattatatta tccgatcaat cagttatatg atagctaaag gatatagtcg      2640
     gccgatcctt atgaaattgg gcagatcgga ttattttgcc agattctata gagtgtccca      2700
     tcgttctaac ttaaaaatca acaaagttat tgcattttcg atcaatcagt tatatggcag      2760
     ctataggata tagttgaccg attccgaaag aagcatgagt gcaaagtttg aagacgatag      2820
     ctttaaaact gagaaactag tttgcgtaga aacaggctgc cagacggcaa acggaaattc      2880
     ctatattgac tcaggaggtg atcctgatta agaatatata tactttatag ggtcggagat      2940
     gtctccttca cttgatcctc caatttgatc aattttttct tgggtgtact gcggaaactg      3000
     agggtgaaag gtcgtatgac agatctggat cgttatcagc attttggtga tttttgaccc      3060
     ctttatgcat tttattgtga agcattgtga agaaatatta tgataatatg aaacgtcatt      3120
     atttcgctga atccctgtcc ccttagttga tagagaagct gaaattctgt ctattctatt      3180
     tgtatatcaa aaaaattaaa ataaacatta ctacaagtct ctggtttcaa tcatacattt      3240
     ttactcgagt atacctcaat gatttaaatc atctgcctgg atcgtagcct acttcaacaa      3300
     tcattttgta tcaaagtcag tcaattatac ctgacgattt ttttgaagcg atttgattca      3360
     aaccgagcta aactatacga tacaaatcac atcaactgat ttaaagttga cttgtacttg      3420
     aatcgatttg aaatgttgtg acatatgatg tgatttgatt tgatctgttt ttgttaaaga      3480
     tgattttatc atactcaatc atactcgttg cagttctctg                            3520
//
ID   Hoana2      repbase;    DNA;    INV; 2427 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Drosophila; Hoana2.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2427
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           255..1121
FT                 /product="Hoana2_1p"
FT                 /translation="MYVCISILMVKWRNLGTRRRSVTPIATSAENQECDYN
FT                 SSGSEKDVLPNKPSNKVKRSKISHVWKYFKKSDHQKLAKCLDCGKEYKTSG
FT                 NTSNLRDHLKRCHPSLEINKSDCSTPAEVTDRNETASTSSSCRSSMNSVAS
FT                 YFKRAVLYESNSKRKTDIDKALTEMVAKDVQPYNIVENEGFIKYTHVLDPR
FT                 YKLPSKTHLRDVLMSNLYKETSAKLSLIFEEVSDVSITCDLWTSSANASFL
FT                 TVTGHFVHNFELKTASLATKKTVKRYKSLFAKHCRYFAKYFNRLEHFN"
XX
SQ   Sequence 2427 BP; 847 A; 450 C; 462 G; 668 T; 0 other;
     tagaggtgga gaactatcga tggcgctatc gacactatcg atggttggcc gctatcgagc        60
     cgcaatcgat agtgtcagac acgttcgata gtgacccaaa cactatcgat agtgccttcg       120
     atagctagcg cctcacatca cgaaaataat ttcaacattc acttgtgaaa atattgaaaa       180
     atttcgtata aaattgacgg caagtcaaaa gtaactgata aaaatggatc gctttttaaa       240
     aaaaggtatg tgtaatgtat gtatgtataa gtattttgat ggtaaagtgg cgaaatttag       300
     gtacacgtcg gaggtccgtt acgcctattg cgacaagtgc agaaaatcaa gagtgcgatt       360
     acaacagctc aggctcagaa aaggatgttt tacccaataa accgagtaac aaggtaaaaa       420
     gaagtaagat ttcccatgtt tggaaatatt tcaaaaagtc cgaccaccaa aaacttgcca       480
     aatgccttga ctgtggcaag gaatataaaa caagcggcaa tacgtcgaac ttgcgcgacc       540
     atttaaaaag gtgtcatcct agcttggaaa taaataaatc ggactgtagc acaccagctg       600
     aagttacaga taggaacgag actgcgtcta caagcagcag ttgcagatca agtatgaact       660
     ctgtggcttc ctacttcaaa agagctgtct tgtacgagtc gaattccaag cgaaagaccg       720
     acatcgacaa agcattaaca gaaatggttg ctaaggatgt acagccgtac aacattgtcg       780
     aaaacgaagg ttttattaaa tacactcatg tattggatcc tcgctataaa ttgccaagca       840
     agacccactt gcgtgatgtg cttatgtcca atctgtacaa ggaaacctct gccaaattgt       900
     cattgatatt tgaagaagtt tcggatgtat caataacatg tgatttgtgg acatcgagtg       960
     ccaatgccag ttttttgaca gtgacgggtc attttgttca taactttgaa ctaaaaacag      1020
     cgtctttggc tacaaaaaaa actgttaaac gttacaaatc actgttcgca aaacattgca      1080
     gatactttgc gaaatatttt aatcgattgg aacattttaa ctaagacggt gtgcattgta      1140
     actgataatg ccagctccat gcttaaagca tgtgaaatgt tgcaaattca aaatttgcca      1200
     tgctttgcgc acacaatcaa cttagttgtg gaagatgcat taaaagttga tgacacagtc      1260
     ataagggatt tgtttactaa gtgcaaatca atagtgagat ttttcaaaca aagcacgatt      1320
     gctaacgaaa aatttaaatt agcacaagaa ggcacgactt atactttgct gcaagaaata      1380
     ccaacaagat ggaacagttt ctttttcatg attgaaagaa ttttaaaaac aaacgatgcc      1440
     attgccaaag tcctattagg aacaacaaat gcacctcagc catttactgc tgaggaaata      1500
     cttgtgctaa aggatataga aaaattgttg tcttttttcc agcaagcaag cgaaaaaatt      1560
     tctggtggga agtatgtaac tatatcacta atcataccca tggcatatgg acttttccgc      1620
     aaaatcgaaa gtttttcacc tatgctaaac actttgcaag gaaaaattat ccaaaatata      1680
     ttaatggaat caataaagaa acgtctttcc atttatgagc aaaggacatt atgtaggatg      1740
     gcaacattgt tggacccacg ttttaaaaaa aatggatttc tacacgcttc aaacgctgaa      1800
     caaccagcag tcttttttga aaacgaactg gcaaattctt caatcaaata gacctcaaat      1860
     aatctgtcca tttcaccgga cacaagtgcc caggagacat tatttgattt tttgtgtgag      1920
     cgatcaaata gcaaagtcag aaacgcacaa ctggatgcta ttcttattaa aaggcaatat      1980
     ctggagaggg caattgccag tcaagatgtg gatccactat tatggattaa ggtataattc      2040
     gaaaacaaat tataagttaa caatatttac atacattact tttattttag gcgaatcaaa      2100
     ctgattttcc ctgcataaaa cgactgtttt gcaaatacct ttgcattcct gctacatccg      2160
     tagaatcgga aagagcattc agcaaggcag ggcaaattgt ttccgagaga cgcacccggc      2220
     tcaaagaaga aaatattaac atacttttat ttttaaatca aaacttctgg ttaaaataaa      2280
     acaattttct taaaaactta aaaaaaaact tgtttgtcgg acgatagtat cggtgactat      2340
     cgatggcact atcgacacta tcgagggttt gagaaaaaca atcgccggct atcgatggcg      2400
     ccgactatcg atagttctcc acctcta                                          2427
//
ID   Hoana3      repbase;    DNA;    INV; 2542 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana3 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoana3.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2542
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           387..2294
FT                 /product="Hoana3_1p"
FT                 /translation="MCEKMDKAKVQRALKENDPDYKLVKPENSKSDVWQLF
FT                 SLIEKCGEKINFVCCTKCKIVFAYTAKTGTGTLLRHKCDVVKAQLNNQPSM
FT                 KEFVKHDVPRSVLRNLACKQLKLVAKDLQPLNATEGTTIHTQISFFSITFF
FT                 SQYTQLVSLQIFNLQLHYLILVGEGFQEYVQEVINVVSTYGKQNFKDLVVS
FT                 RRTLTRDIMVTEYTRIKSELQKTLHLYELAFTTDMWTDTYTQRSFISLSAH
FT                 YITNSFELKVSILGIKEFTSEKKTGVNILAHVQNILEEYDLKSSLHKSVIV
FT                 TDNGANVVAAFNKYKRISCACHNLNLVMEDVLERNRNQELEILLDNCKKLV
FT                 GYFKHSELNNKLTKSLKQDVRTRWNSIYIMLSSILEGQEEIEKLLLQKNEI
FT                 KRIANIDFVFMKHLINFLAAFKECSEQLSSEKQPTMHIYVLWFEKLKKHCN
FT                 SLNEFVDADIISQLRSMTLNSLQKRFQPATINFVGLFLNPPFKELKFLGEE
FT                 KKNHVILTVKNMIDELKKNLDFNFESESENSPPKNTNHNFAEFFDNRQTKK
FT                 IKLMKSDTDIEIDNYLTIEYSADTPILTFWENAHHLKLLRMLAKQILNIPV
FT                 SSATSERVFSCSGQILNDRRTRLTSSNLDKILFLNKNM"
XX
SQ   Sequence 2542 BP; 903 A; 422 C; 445 G; 772 T; 0 other;
     tagaggtggg catgggctcg tgttttcgtc gtggcacgcg tgcgcacgcg tggccacgcg        60
     tgttcgtaac aaaaataaaa atttaacacg cgtgcgtgcg ttttcgtgcc gaccctccaa       120
     aacacgacaa aacacgaagc attaaaaatt gtattttctg gaaatttcga gaaaaaaaaa       180
     tttttgcaac gttgtatttc gattttgtca tttgacaaag tgccaaaatg ccaaaatgcc       240
     aagtgccgtg atgccactcg atattggcaa aaaaaaaata ttttttacaa ctttttcatt       300
     cgatagtggc gactttcgat aattttcagc ttaagcttct caatgacata gttgaccacc       360
     tctatatttt gtgtaaaacc aatagaatgt gcgaaaaaat ggataaagca aaagttcaac       420
     gggctttaaa agaaaatgat ccggattaca agcttgtgaa accggaaaat tctaaaagtg       480
     atgtgtggca attattttcg ttgattgaga agtgcggtga aaaaattaat tttgtttgct       540
     gcacaaaatg caagatagtg ttcgcctata cagccaagac aggcactgga actttattgc       600
     gacacaaatg tgatgtagta aaagcacaac ttaacaatca gccatcaatg aaggaatttg       660
     tgaaacatga tgttcccagg agcgtgcttc gcaatttggc atgcaagcag ctgaaactag       720
     ttgccaaaga cttgcagcct ctgaatgcta ctgaaggtac aacaattcat acacaaatta       780
     gttttttttc aattaccttt ttttctcaat atacacaact agtatcttta caaatattta       840
     acttacaatt acattaccta atacttgtag gtgaaggatt ccaagaatac gtccaagagg       900
     tcatcaatgt tgtttctacc tatggcaaac aaaattttaa ggacttggta gtgtcgagga       960
     gaactttaac ccgagatatt atggtgacgg agtataccag aatcaagtcg gagctacaaa      1020
     aaactctaca tttgtatgag ctagcattta ctacggatat gtggacagat acctacaccc      1080
     aaagaagttt tatatcatta agcgctcatt atataacaaa ctcatttgag cttaaagttt      1140
     ctatattagg tatcaaagaa tttacctcgg aaaagaaaac gggcgttaac attttagccc      1200
     acgttcaaaa tatcttagag gagtacgatt taaaatcaag tttgcataaa tctgtaattg      1260
     taaccgacaa tggcgcaaat gttgtcgcag cttttaacaa gtacaaacga atttcatgcg      1320
     cctgccataa cttaaattta gttatggagg acgttttaga aaggaatcgt aatcaagaac      1380
     ttgaaattct tttggataac tgtaaaaaat tggttggata ttttaagcat tccgaattga      1440
     acaataaatt aactaagagt ctgaaacaag atgtaagaac tcgatggaat tccatttata      1500
     tcatgctctc gagcattctt gaagggcaag aggaaattga aaaactactt ttgcaaaaaa      1560
     acgaaattaa acgaatagcc aatatagatt ttgttttcat gaaacatctt attaattttc      1620
     ttgcagcctt taaagaatgc tccgagcagc tgagttcaga gaaacaacca acgatgcata      1680
     tttacgtact ctggtttgaa aagttaaaaa aacattgcaa ttcacttaat gagtttgtag      1740
     atgcagatat tataagtcaa ctaagatcta tgacgttaaa ttcattgcaa aaacgctttc      1800
     agccagcaac aataaatttt gttggcctct ttttaaatcc gccatttaaa gaattaaaat      1860
     ttttagggga agagaaaaaa aaccatgtaa ttctaacagt aaaaaatatg atagatgaat      1920
     taaaaaaaaa tcttgatttt aattttgaat ctgaatctga aaacagccca ccaaaaaata      1980
     ccaatcacaa cttcgcagag ttttttgata atcgacagac taaaaaaatt aaattaatga      2040
     aatctgatac agatatagaa attgacaact atttgactat tgaatacagt gcagatacac      2100
     ctatattaac attttgggaa aatgcacatc atttaaaact tttgcgaatg ttggcaaaac      2160
     aaattctgaa tattccagtt agctctgcta caagtgagcg agttttttca tgttcagggc      2220
     aaattttaaa cgatcgtcgt actagactta caagctctaa cttggataaa atattgtttt      2280
     taaataaaaa tatgtaaaat attaataaga ttttcctaca tatacaatta tactattata      2340
     tattaagata ctttaatttg ataaaaaaaa tatatgtacc tattcctatt taaataaata      2400
     atgtaaataa tttatttcgt gttgggccgt gttgggccgt gttgccaaaa tttttggccg      2460
     tgcgtgtgcg tgcgtgctaa aaaaacttcg ctgtcgtgtc gtgttgggcc gtgtcgaaaa      2520
     attcagccca tgcccacctc ta                                               2542
//
ID   Hoana4      repbase;    DNA;    INV; 2532 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana4 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; Hoana4.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2532
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1269..2270
FT                 /product="Hoana4_1p"
FT                 /translation="MIKAFSSSDKIHCINHLLNNAVEKAINAIPEVENIVT
FT                 SCSQLVRYFKKSGNNSSLGVSLKSFCPTRWNIVYYLLKSIEINWIELTAIL
FT                 KENKQTCRVDDININHLGAIVRLLEVFENVSKKLEASKRPTIHLILPNLNK
FT                 LKKTCNIEYYDAEIIKSLKFQLNSQILSTVTPNLSKYHNIALFLFPPTNKL
FT                 IQFSQTEKETIINDCKIIMSQFLEDNSDLNNNAAQLVDDEFADYFDVPKFE
FT                 TVQDKVEQEISGYSNIKVAYTPDFNALAWWHLNKQFFPLLHKTSCKIFCIP
FT                 ASSAASERTFSNARNLITEKRCQIATNSENINKIMFLHSNLN"
XX
SQ   Sequence 2532 BP; 863 A; 442 C; 450 G; 777 T; 0 other;
     tagacatctg catgattaca ttcataacat acttctaata gagtacattc gaatcgaata        60
     gaatgaagtg agtggaatga tggaattgaa atgagattgt atgaatgtaa gcttaggttc       120
     ctctcgtaat ttgagacgtc aaacgaaatg acagggaatg aacgaatcga aaagtgaaat       180
     gagatatatg tcaatgtcat gtatacccga atccttcgag ttgtttctta tcattcgtgc       240
     acatttcttt ctgagagctg ctacaaattt gtctacaaat ttttaacaat ttttaactta       300
     atatcaaaaa aaaagagctg ccaaaaaaaa aaacggaaat atggacaacg aatttataaa       360
     agaagccgac gagcctgtat gtatatattt gtagagtttt ttaaagttta gtgtttaggt       420
     ttttaagagt taatttaatt tatttaaaat atataggctg tgcaaagcgc ggtgggtatc       480
     aaagagaacc tgcaaagtgg aatgtacacc ttaacagaaa agagaggcag aagcgaagtc       540
     tgggagtttt tccgcaaaat aaaaaccgaa aatggagaac aaattgatga ctttgtagct       600
     tgtaagatgt gctatactgt tttaaagttt acaggaagca catctaacct ggtcaaacat       660
     aagtgctaca tcctaaatgc cagcaaattc cacaccgctg ctcttgttga agttaacaaa       720
     gctacaaaag acgagggctt atctgttgta accgaatggg ttcttaagaa ctgccgtcct       780
     cttaacatta ttgacgactc tggcatcaaa cagtttgctt catttttaat taatgttgga       840
     gctaaatatg gtgcaaatgt cgatgttaat aagctgttac cacatccaac taccgtatcc       900
     cgaaacataa aatctatata tttgacccac tttgggccaa taaaaacgga aatagaaaag       960
     tacaaagcct ttggatatgc tattaccagt gacatatgga ctgataactt cttaaaaaca      1020
     gcatatttgt cgtgcactgt ccattacata agagagggag ttttggtcga tcgccttatg      1080
     gccatgaagt caatgaaagg ctcgcccaac acaggtttgt taactctatc tttatgttac      1140
     aagtataatt acaatttttt ctttgtcaag gtgccaatat aaagaaaaaa atagaggcga      1200
     ttttgaagga ctttggatgt gaccttgaag tagacaaacc cgtaatcgta actgatcgtg      1260
     ggtcgaacat gattaaagcc ttttcgagct cggataaaat tcactgcata aaccacttgc      1320
     ttaacaacgc tgttgaaaaa gctattaacg ctattcccga ggtggaaaat attgtcacaa      1380
     gttgcagcca gctagtcaga tattttaaaa agtcaggaaa taattcatcg ttaggggtgt      1440
     ctttaaagag tttttgtcca actcggtgga atatcgtcta ctatttgctc aagtccattg      1500
     aaataaattg gatagagcta acagcaattt taaaagaaaa taagcagacc tgcagagtgg      1560
     atgacatcaa tattaatcat ttaggtgcaa ttgtacgatt gctggaagtt tttgagaatg      1620
     tgtccaaaaa acttgaagct tctaaacgcc caacgataca tttaattttg ccaaatttaa      1680
     acaagttaaa gaaaacgtgc aatatcgagt actatgacgc agaaataatt aaaagcctta      1740
     aattccaact caatagccaa attttatcta cagttactcc aaatctgtca aaataccata      1800
     acatagcttt gttccttttt cccccaacta acaaactaat tcaattctca caaactgaga      1860
     aagagaccat tattaatgat tgcaaaataa ttatgagtca atttcttgaa gacaattctg      1920
     acctcaacaa taatgcagcc cagttagtag atgatgaatt tgccgattat ttcgatgtcc      1980
     ccaaatttga gacagtacag gacaaggtgg aacaagaaat ttctggatat tccaatatta      2040
     aggttgcata cactcctgat tttaatgctt tagcttggtg gcatttaaat aagcaatttt      2100
     ttccgctatt gcacaaaaca agctgcaaaa tattttgcat tccagcgagc agcgcggctt      2160
     cggaacggac cttttcaaac gcaagaaatt tgataacaga gaagcgttgt caaatcgcca      2220
     ctaactctga aaatattaac aaaataatgt ttttgcattc aaatttaaat tagatataaa      2280
     ttcgctgcat ttaatttgtt tttatttcct tttatttaca tttacaactc gaatcatttg      2340
     aatgaaacgt ctctgttttc aacgttctca attcactcaa ttcgtttcct tctatcaaat      2400
     gattgtgcaa atgagtaggc gtaagagatc catccctctc acatcatgtt ggctttgctc      2460
     tcaaattcac tcaactcatt tttagcattg tgcatttgaa tgtgggtttt ttgccactca      2520
     tgcagatgtc ta                                                          2532
//
ID   Hoana5      repbase;    DNA;    INV; 2373 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana5 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoana5.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2373
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           601..1497
FT                 /product="Hoana5_1p"
FT                 /translation="MHPDRLKVGKGQNDNATALDVFVGRSTFYSNDSARKR
FT                 KLDEMVMNMIAVDVQPFSCVEDEGLINLLREMDPRYKLPSRTHLRDTVLPN
FT                 QYDRLKIVLISVLDKIDFLALTTDLWTSRANEGYITITCHFVWTGAKLISA
FT                 VLATRQLVTSTNHTAPNIAETISSVLTEWAIASKVVCVVTDNDSTMKKACE
FT                 LLKYKHLPCVAHTINLLVQDALRFPVVESILSKCKSIVAYFKRSTVAYEKF
FT                 KEAQGVDQPVGLLQEMPTRWNSAYEMIKRIIKTNEHITVVLVTSRNAPPPL
FT                 TPDEVDV"
XX
SQ   Sequence 2373 BP; 734 A; 489 C; 504 G; 646 T; 0 other;
     cagaggtgga gaaacatcga tgttaacatc gatgtcatcg atgttttgaa aacatcgttg        60
     acatcgatgt ttggcaagcc aacatcgatg tttatcatct ctaacgagca tcaagcaggg       120
     aagacgtgaa aattgtaagt agatttaaat taagttattt ctgataaatt actaatgtta       180
     tgttgcaaac tagtgttctg ttggtggtgt tggctgaggt agtggagtgg aggcatggag       240
     agatatctga aacgtaagta ttattaacat aaaagctgag gaaactttgc atttatatgt       300
     gcatacatat gtatgcacgt atgctctgct tgcacgtgcg cgcatggcat gtgtgtgtgt       360
     gcatatgtac atttgtactt ttacatggta tttgtattaa aatagtactt tttaggaaca       420
     tcaaaatcgg atgaaaatgt ggaggagcca gcaccaggtc caaaaaagaa gcgggaagct       480
     tcggttgcct gggatcactt caaaaaagac gttagaaaga cacacggagt ttgcaattat       540
     tgtggcaaag ctataaaaac aaacggtaat actacaaacc ttctcgacca tctaaggcac       600
     atgcacccag atcgccttaa agttggaaaa ggccaaaatg acaatgcaac tgctttggat       660
     gtgttcgtgg gaaggtcaac gttttacagt aacgattctg ccagaaaacg gaaactcgac       720
     gaaatggtga tgaacatgat agctgtagac gttcaaccat tcagctgtgt tgaggatgaa       780
     ggtctcatta atcttttaag agaaatggac ccgcgctaca agctgccaag ccggacccac       840
     ttgcgtgaca cagttcttcc aaatcaatat gaccgtttaa agatcgtcct aatttctgtt       900
     ttggacaaga tcgactttct ggccctaacg actgatctgt ggacatcgag ggcaaacgag       960
     gggtacataa ccataacgtg tcattttgtg tggaccggcg caaaactgat ctcggcagta      1020
     ttggcaacta ggcagcttgt aacatccaca aaccacacgg ctcccaacat agccgaaact      1080
     atatcatctg tgctgacaga gtgggctatt gcaagtaagg tggtttgcgt agtaacggac      1140
     aacgactcga cgatgaagaa agcgtgtgaa ctgcttaaat acaaacactt gccctgcgtg      1200
     gcacatacaa ttaatttact tgtgcaggat gctctacgtt ttccagttgt tgagagtata      1260
     ttaagcaaat gcaagtcgat cgtcgcctat tttaaacgaa gcacagtagc gtatgaaaaa      1320
     ttcaaggaag cgcagggagt agaccagccc gttggactgt tgcaagagat gcctactcga      1380
     tggaatagtg cttacgaaat gatcaagcgg atcattaaaa caaatgagca catcactgtc      1440
     gtgctggtca catctcggaa tgcacctcca ccgcttacgc cagacgaagt agatgtctga      1500
     catgacttgt gcgaacttct gtccccgttt gatgatgcca ctctatcagt ttcaaccaac      1560
     accaccgtat cagtttcaat tatcatccca gttatatgcg agcttttcca caaaatttct      1620
     ggtctggatt gtaaactcaa aacaactgaa ggaactattg ctttgggata tatcaagact      1680
     tgcttgcgtg agagattatt gccatatgag ggtagaacca ttccacgtat agccaccatt      1740
     cttgaccctc gttttaaaaa acagggtttt ctcagccaaa ccaactcaga agaagcggct      1800
     aaagctttgc aggacgagct aaactccacc cttgtgtcca ttcctcgaca gcaaccagca      1860
     ccaccaacag aagaacccac acgattttct ttcatgaaat caaaattgga tgcaaaagtt      1920
     caatcattcc gggccgatgc tattgtcctg ttgcgacaac atgtggaaaa agagaaccag      1980
     cccgaaaagt gcgagccact tgcgtattgg gaggtaagaa tgttttaatt aagacctttt      2040
     gttcttaaaa tataacaatt tatcttattt cagatgtcta ccgaagaagc ttttaaaatc      2100
     ttgtctaaaa agtatttttg cgttcccgct tcatcgtgtg aatcagaacg tgtattcagc      2160
     aaagcaggac aactgatatc cgaccgtcgc accagacttt catcttcggt cgtcgacaaa      2220
     cttttgtttt taaacaaaaa caaacatata aataaaattt gactgtgata aaaaaaattt      2280
     tttttctttt aaacatcgat gtttcatcga tgttttgccc caaaaacatc gaaaacatcg      2340
     atgtccgcga acatcgatgt ttctccacct cta                                   2373
//
ID   Hoana6      repbase;    DNA;    INV; 2594 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana6 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoana6.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2594
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           407..1891
FT                 /product="Hoana6_1p"
FT                 /translation="MHCNKVYKTSGNTSNLFDHMKRLHPGISMEEQQKRAN
FT                 TIVPFLFNQYDRDSSRKKLIDNALAVLVSADMQPFSIVEDSGFREFVRVLD
FT                 PRYTLPSRKTLQHVYMKNIFEDLKTKLFTILDRVNSCAITADLWTSKANES
FT                 YITATCHFITKDFVLRSVVLATKPLLDDSNHSAQNIASSLRGICDEWNIFD
FT                 KIAAITTDNANSMIKACEFLQKRHLPCVAHTINLVVQSCLAIDCLQDILLK
FT                 CKRIVTYFKSSSIALSKFKASQETDIKYSLIQEVPTRWNSAYHMIERILLT
FT                 NEAISKVLLSTSKAPTPFTADEVAILKDIVQLLSPFDNATKQVSSSTSVTA
FT                 SLIVPIVCGLLHTLDSFRLKLNSFEGIEALNCLVDQVKKRLLGYEKRTFPK
FT                 MSTLLDPRFKKQGFRSPFNADDGLHALENELAALKTPTEKESDCQQPLFEF
FT                 VVKNISTLGRTNRVDAIVELQQYMRAAHSPQQTDPLKFWKVISLQICSLI"
XX
SQ   Sequence 2594 BP; 833 A; 489 C; 480 G; 792 T; 0 other;
     tagagctggg tcggccactc acgatagtat cgatatatcg aatatttggg tttgcgaacc        60
     actatcgatg tttgagtgcc gatagtaaac gatagtggca agcttgcaca tctttacttt       120
     tggcgaacaa ctgcggagat ctacacgtga aagttaatat tggtgttggc ggagaaaatg       180
     gacaaatttt tgcaaggcga atacgataaa ggtaggtatc taaactagtg catatctgag       240
     tatgttttgg actctttctc aataactaat ttctgatata taacttttta caggcataag       300
     tgcaaagagc aagtcggagg aggacgaaaa ccaggtgaaa cgaataggga agtccaaagt       360
     gtggaaccac tttaaaaagt cccaagatgg caagacggca agttgcatgc actgtaataa       420
     agtttacaaa acgagcggaa acacgtcaaa cttgtttgac catatgaaac gactccaccc       480
     gggaatttca atggaagagc aacaaaagcg cgcgaatacg attgtaccct ttttgtttaa       540
     ccagtacgat cgagactcgt cacgtaaaaa acttattgac aacgctttgg ctgttcttgt       600
     gtcggcagat atgcaacctt tttcaattgt agaggattcc ggatttcgcg agtttgtcag       660
     agttcttgat ccacgataca cacttccttc gcgaaagact ctacaacatg tatacatgaa       720
     gaatatattt gaagacttga aaacaaaact ttttacaata ttggaccgcg ttaacagttg       780
     cgccattact gcagaccttt ggacttcaaa agccaacgag tcgtatatta ctgcaacttg       840
     ccactttata acaaaagact tcgttttgcg ctcagttgta ttggccacaa agccgttatt       900
     ggatgactct aatcattcgg ctcaaaacat tgcttcttca ttgcgtggca tttgtgacga       960
     atggaacatt tttgacaaaa tagcagctat tacaacggac aacgctaact ctatgatcaa      1020
     agcttgtgag tttttacaaa aaagacatct accctgtgtt gctcacacca taaacctggt      1080
     tgtgcaaagc tgtttggcga tcgattgctt acaagacatt ttacttaaat gcaagcgaat      1140
     tgtcacatac tttaaaagca gctcaattgc acttagtaag tttaaagcgt cgcaagaaac      1200
     ggacattaaa tatagcttga tacaagaagt gcccacaaga tggaacagtg cctatcacat      1260
     gatagaaaga atactactta caaatgaggc catctcgaaa gtacttttaa gtacgtctaa      1320
     agcaccaaca ccattcactg cggacgaagt cgcaatatta aaagatattg ttcagttact      1380
     atctccgttt gataacgcta caaaacaggt atcttccagt acttcagtta cagcatcgct      1440
     gatagttcca attgtttgtg gattattgca cactttggac agcttcagat tgaagttaaa      1500
     ttcatttgaa ggcattgaag ctctaaattg tttagttgat caagtaaaaa aacgactttt      1560
     gggctatgaa aagcgcacct ttccaaaaat gtcaactctt ctggatccaa gatttaaaaa      1620
     gcaaggtttt cgttcgccct ttaacgccga tgatggcctt catgcattag aaaacgagct      1680
     agctgcctta aaaacaccaa cagaaaagga atcagactgc cagcagcctc tttttgaatt      1740
     tgttgttaaa aatatttcta ctttggggag gacaaaccgg gtcgatgcca ttgttgaact      1800
     tcaacagtac atgcgagcgg cacattcacc tcagcaaaca gatcctttaa agttttggaa      1860
     ggtaatttct ttacaaatct gcagtttaat ttgaacttat tatctttttt taatttcagg      1920
     gcgctccaga tgattctctt cttaaaacta cagctgaacg ccttttttgt gtgcaagcat      1980
     catcgactga gtctgagagg agttttagta aaacgggaca aattatttct gctaggagag      2040
     catcactaaa ggccaaaaac gtggatatat tatcctttct caaaataatt cacaaaatct      2100
     tcttatgatc aatcaaataa tttctaaata ggtacactga cgactaatat tgtaacatga      2160
     gttcaatgct atagcctcaa cggttagtat tttctgttct aagttatacc tgctaaaacc      2220
     ttagactagg ttatagcatg tgtaactcaa aacagaagat acaaaccgtt gaggctatag      2280
     cattgaactc atattacaat attagtcgtc agtgtacaaa tttagaatat attaacctat      2340
     tcataagaat cttttgtgaa ttatttcatt tcttcctttg ttataagcga cttcatatga      2400
     ttatgagatt ttgttatgtt ttgttattcg aataaagaat ggcctttaag aagttttttt      2460
     tattatttac tctaaatgca acttaaactt gatttataat ttttttagtt cgatactatc      2520
     gatactatcg aatatttgta tgaaaaacct cgaaaacctc gaatatgcca actatcgatg      2580
     ttttcccagc tcta                                                        2594
//
ID   Hoana7      repbase;    DNA;    INV; 2519 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoana7 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoana7.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2519
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           642..2174
FT                 /product="Hoana7_1p"
FT                 /translation="MQCGKVLKTSGNTSNLMQHLRTAHPIREQAENIAVSP
FT                 CMNKFLESSKQYSNASARKIAIDKAVMRMIALDMQPFSIVTDRGFVNLMKC
FT                 VDPLYKLPSKTHLRNVILNNEYEASKEKLKKSLEQVDHVGITTDCWTSKAN
FT                 EGYLTVTVHFVLPSFQLHSAVLSTEKLVTPESHSALTIADSLNLILTEWNV
FT                 LKKVTSIVTDNDASMKKACDLLQIKNFPCFAHSINLLIQDTLKLPMLTPVL
FT                 QKCKRIVNYFKSSTIAYEKFKKAQGETAYSLIQEVPTRWNSALYMMQRILT
FT                 TNTHISAVLLGIPKAPQPLGADEVLMLEDFIKILEPFEHATKSTSHEKEVT
FT                 ISIVIPLICELNKKMADMEKIIITTEGKATFQYLKKRMSERLSHYETRTVA
FT                 RLATILDPRFKKFGFLSQTNADEAAKALEIELYNKMSKFNHDAPTPPTPQP
FT                 ENKQFTFLSQKVGEKIKSSRADSIIALRQYLEVSNSPEDCNPLTFYKVFLI
FT                 EIPKFYIKFNDLFYR"
XX
SQ   Sequence 2519 BP; 886 A; 461 C; 453 G; 719 T; 0 other;
     tagagctgga aaaaacctcg atgtaacatc gatatatcga tgttgccgaa aatttagcaa        60
     catcgatatt ttagttttca acatcgatta tcgtcacttg cagccgaata aaagaggaag       120
     catcaacgcg tggtaaggta agtgaaaatt aaaatgaata ttattaacaa aaactaatcc       180
     attgttattt ttcattttaa tagagtaatt ggtggtgttg gcagtcatcg tgggagaatt       240
     atggacaaat ttttaaaaag taagtttgat gaaactgttg taaaatgaat atttgtatgt       300
     atgcatgtat gcatgtatgg gtagaaatgt gtttaattct actctaattc tacaatgcat       360
     tcatctatac atctttattt gcgttagacc catatatatg tatatattta tacatatatg       420
     tttaatgctt tacacatatt tatacataca tacaactatt agaacatttg ttataagttc       480
     ataaattaat attattttgc attacaggaa cttcgaatgt gttgggcgac gtggaaaacg       540
     aagaaaacaa agaaatctca atttcgaata acaagcgcaa ggaaaaaatt tcaatagttt       600
     ggaattattt taagaaggga acaaatcaaa ccgcgtcttg tatgcaatgt ggaaaggtcc       660
     tcaaaacatc tggaaatacc agcaatttga tgcagcattt gagaactgca catcctataa       720
     gagagcaagc agaaaacatt gcagtttcac catgcatgaa caaatttctt gaaagttcta       780
     agcaatactc aaatgcctct gctcgaaaaa tcgctataga caaagctgta atgaggatga       840
     tagcattgga tatgcaacct tttagcattg ttaccgatcg cggatttgtt aatttaatga       900
     agtgcgtgga tcctttgtac aagttgccaa gtaagacaca tttgcgtaac gttatcttaa       960
     acaatgagta tgaggcctca aaggaaaaac tcaaaaaatc attagagcag gtagatcacg      1020
     ttgggattac aacggactgc tggacatcta aagccaatga gggttattta acggttacag      1080
     tacactttgt cttaccatct tttcaacttc actcagcagt gttgtcaaca gagaaacttg      1140
     taactcctga aagccactct gctcttacta ttgcggattc attaaacctt atattgacag      1200
     agtggaatgt cttaaaaaaa gttacatcaa tagtaacaga caatgacgct agcatgaaaa      1260
     aggcatgtga cttgttgcaa ataaaaaact ttccttgttt tgcacacagc ataaatcttt      1320
     tgatccaaga tacgcttaaa cttccaatgc tgactccagt gttacaaaaa tgcaagagga      1380
     ttgtgaacta ttttaaaagc agcacaatcg cctatgaaaa attcaagaag gcacaaggtg      1440
     aaaccgctta tagtctaatt caggaggtgc ccacgcgttg gaactctgct ttgtacatga      1500
     tgcagcgcat attgactacg aacacacata tatcagcagt gctattaggc attccaaagg      1560
     ccccacaacc attgggagca gatgaagttc taatgctgga agacttcatt aagatattgg      1620
     aaccctttga gcatgcaacg aagtcgactt cgcatgagaa ggaggtgacc atttcaattg      1680
     taattccttt gatttgtgag cttaataaaa aaatggcgga catggagaaa ataataataa      1740
     caactgaagg aaaagcaacg tttcagtacc tcaaaaaacg tatgtcagaa cgcctgagcc      1800
     actacgaaac acggacagta gctagacttg cgacaatttt ggatccacgc tttaaaaagt      1860
     tcggctttct ttcgcaaaca aatgcggacg aagcagctaa agccctcgaa attgaactat      1920
     acaataaaat gtccaaattc aaccacgatg cgccaacacc accaactcca cagccggaga      1980
     acaaacaatt taccttcttg agccaaaaag ttggagaaaa aatcaagtct tccagagcag      2040
     actctataat agctctgcgg caatacctcg aggtttccaa ctctccagag gattgcaacc      2100
     cattaacatt ttataaggta tttttaattg aaatcccgaa attttatata aaattcaatg      2160
     atttatttta tagatgagcc caaatgaaat ggaacctttc aaagctactg caaagcagta      2220
     cctttgcgtg ccagcaacat ctactgcatc cgaaaggacc ttcagtaaag ccggccaact      2280
     gataagtgac cgcagaagct gtctaaagcc aaaaattgtg gataagcttt tgtttttgaa      2340
     caaaaatgct gatttgatct cctatatgaa ttctgaatga ttgatctcct gtaaataaat      2400
     ttagaaatta accaaaaaaa aattgttttt aaacttcgat aatcgattat aatcgatttt      2460
     ttccccttaa aacatcgaat acatcgatgt caccgaacat cgatgttttt ccagctcta       2519
//
ID   Hoana8      repbase;    DNA;    INV; 3123 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   16-SEP-2011 (Rel. 16.09, Last updated, Version 2)
XX
DE   Hoana8 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Hoana8.
XX
NM   Hoana8.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3123
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
CC   The original consensus included Helitron insertion (masked).
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1929
FT                 /product="Hoana8_1p"
FT                 /translation="SVAMVSLWGRNWLSKILSAYLVSFSYFNHSLLDIRVS
FT                 NMTSEAEAIPRKITSVELKTIPRGKGKSLIWNILYEIQREDGSLVDGWIFC
FT                 STCEKVLKYSQKQTSNLSRHKCCVQLKNPPEEKNVADADKKEAIKKCTSWI
FT                 VQDCRPFTAVSGPGFKELVKFFIKIGATYGSNVNIEDLLPDPTTLSRNTGK
FT                 EAAEKKVELAQNLKNAVNAGDVSATVDMWTDNYVQRNFLGVTVHFFKDARL
FT                 QSLVLGIKSMEYQRSTADNISRKLRTLFADFNIDNVEKVKFVNDRGSNIKK
FT                 ALEEYTRLNCSTHLLSNALESSFNEATDLADTLDTCKKVVKYLKKSNMQHH
FT                 LQTTLKNPCPTRWNSHYTMLKSIVDNWAEVNKIINETPTAPVLNENLAELK
FT                 SLVALLEGFERVFKELQICKSPSIFFVVPSIAKIFELCETQMTDFLSIAKL
FT                 KENLLNHINAIWKENLSIWHKVAFFLYPPATVIQQDLHEIKSFCVYQMEIN
FT                 TAENDQDSNSSFILNNNNAMRLTPPSVASKQSX"
XX
SQ   Sequence 3123 BP; 944 A; 554 C; 535 G; 838 T; 252 other;
     cagagaacgg cacgggtggc acttttcggc aacttatgca tgctcataaa aattcgtata        60
     tggatggcac tctccactca tcagaaaaat tacatgatgc gacacacaca aattccaata       120
     agtgtaatga gtgtattgcc tttctagcac ttgttcactt tgtgtatgtg tgactttaaa       180
     cactcagaca ctcaggtatt ttacgctcgt aagtattaat catacttgcc acacaaatga       240
     gagattagta aaaatcatga ttgtgtcaaa aaaacatgag tagtaaaaac acacatgaaa       300
     gtcttgagtc ttttcagaaa cacctaggtg ttttcagatt gatctgttgc tatggtttca       360
     ctttggggac gaaattggtt gtcaaaaata ttatccgcat atttagtatc attttcttac       420
     ttcaatcatt cattattgga tatccgagta agcaacatga ctagtgaagc cgaagctatt       480
     ccccgaaaaa ttacaagtgt cgaacttaaa acgataccta gaggaaaagg taaaagctta       540
     atatggaata ttttatatga aattcaaaga gaagatggat cactggtgga tgggtggatt       600
     ttttgcagca cttgtgaaaa agttttaaaa tattcccaaa agcaaacctc caatttgtcg       660
     agacataagt gctgcgttca attaaaaaat cctccggagg agaaaaatgt ggcagatgcg       720
     gataagaagg aggccataaa gaaatgtaca tcgtggatcg tccaggattg ccggcctttc       780
     acagcagtgt cgggacccgg atttaaagaa cttgtgaaat ttttcattaa aataggagcc       840
     acgtacggaa gcaacgtaaa tattgaagat ttacttcccg atccgacaac tctaagccga       900
     aacaccggaa aggaagcggc cgaaaaaaaa gttgaattgg cgcaaaattt aaaaaacgct       960
     gtaaatgccg gagatgtgtc agccacagtc gacatgtgga cggataacta cgtgcagcgg      1020
     aacttcttag gagtaaccgt ccactttttc aaggacgcta gactgcaaag tctggtcctg      1080
     ggaattaaat cgatggagta ccagaggtcc acagcggata acatttcgag aaaactgcgg      1140
     accctcttcg ccgacttcaa catagacaac gtagaaaaag ttaaatttgt aaatgatcga      1200
     ggatcaaaca taaaaaaagc tttggaagaa tatacccgac taaactgcag cacccatctg      1260
     ttgtctaacg cgttggaaag ctccttcaat gaagcaacgg atttggcgga taccttggac      1320
     acgtgcaaga aggtggtaaa atatttaaaa aaatctaata tgcaacacca tttacaaacc      1380
     accttaaaaa acccgtgccc cacccgatgg aactcccact ataccatgct aaaatcaatt      1440
     gttgacaact gggcggaggt caacaaaatt ataaatgaga cgccaactgc acctgtccta      1500
     aatgaaaatt tagcagaact aaaatcttta gtggcgttat tagagggctt tgagagggtt      1560
     tttaaagagc tacaaatttg taaatctccc tcaattttct tcgtagttcc ttcaatcgca      1620
     aaaatctttg aactatgcga aactcaaatg acagactttt tatcaatagc taaattaaaa      1680
     gaaaatcttt tgaatcacat aaacgctatt tggaaggaaa atttaagcat ttggcataaa      1740
     gtcgcctttt tcctttatcc accagctact gtaatccaac aagatttaca tgagataaaa      1800
     tctttttgcg tttaccaaat ggaaattaat accgccgaaa acgatcaaga ttccaattca      1860
     agcttcattt tgaataacaa taacgcaatg agacttacac ccccctcagt tgcttctaag      1920
     caatctttxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1980
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2040
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxgtgttttt taagttagag      2100
     ggttgggact ttccacacat gttatatttg accaaaatat cttgtgxxxx xxxxxxxxxx      2160
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxa aattggcata actttggtgt      2220
     tttttaagtt agaaagatgg gatttggtac agattactct tttggcaaaa taattcgaca      2280
     tgccaaattt cataaggatc ggccatttat atacgatccg ctacatatct aataatacaa      2340
     gatgcgtggc gccacctagc ggactgcgac txxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2400
     xxxxxxxxxx xxxxxxtcct ttcttgtttt ttcaaattta gtccacccta ttgactatac      2460
     atccgaaacg ccattagaag aactggaaag gtattgccga gaaagagtgg ctctaaccga      2520
     gggctttgaa ccaactgatt ggtggaatca aaataaaaat gcataccccc gactttctca      2580
     tcttgcactg caagtccttt ctatacctgc cagtagtgcc gcctgtgaga gggtgttttc      2640
     tatggccggt aatattatga ccgaaaagag gaataggctt acaccaaagt ctgtagacaa      2700
     cataattttt ctccacttca tctttaaaaa ttcacgcgaa gcttaaatat tttaatttca      2760
     ataaagtccc ctattatgta aattcaatgt tttttatttt ttatatgtta ttataaatta      2820
     atatatatgt tcaagttatt ttaataaaac catccttgcc tattattgtt ttatgaaatt      2880
     ttttttgtgc ctttccttcc actcatcttt ttttcatcag tgcctacgat tgattttcaa      2940
     aaattttaca gagtaaagaa aaggcaagta ctcaaaatca tgtgtgttta cacacacccg      3000
     aaattttttg acacagtaac tactcgtagc cgaaactttg tgcacgaaag gcactcggat      3060
     gtataaaaca cccggtgttt ttcgggtgta ctcattgagt gagtggcatg ctgccagact      3120
     ctg                                                                    3123
//
ID   HOBO        repbase;    DNA;    INV; 3016 BP.
XX
AC   X04705;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   HOBO is an autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase;
KW   hAT superfamily; Autonomous DNA transposon; DMHOBOG; HOBO.
XX
NM   HOBO.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3016
RA   Streck D.R., MacGaffey E.J. and Beckendorf K.S.;
RT   "The structure of hobo transposable elements and their
RT   insertion.";
RL   EMBO J 5, 3615-3623 (1986).
XX
DR   GenBank; X04705; Positions       1    3016.
XX
CC   HOBO transposase is encoded by CDS 316-2250; HOBO induces
CC   8 bp target site duplications upon its integration in the genome;
CC   it has 12-bp terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..2247
FT                 /product="HOBO_1p"
FT                 /translation="MAPYIMIVEFLCLWSSVSAVNCPFFVFYDAITSLLGF
FT                 SIIWKPKEKVTIMAEAADFVKNKINNGTYSVANKHKGKSVIWSILCDILKE
FT                 DETVLDGWLFCRQCQKVLKFLHKNTSNLSRHKCCLTLRRPTELKIVSENDK
FT                 KVAIEKCTQWVVQDCRPFSAVTGAGFKNLVKFFLQIGAIYGEQVDVDDLLP
FT                 DPTTLSRKAKSDAEEKRSLISSEIKKAVDSGRASATVDMWTDQYVQRNFLG
FT                 ITFHYEKEFKLCDMILGLKSMNFQKSTAENILMKIKGLFSEFNVENIDNVK
FT                 FVTDRGANIKKALEGNTRLNCSSHLLSNVLEKSFNEANELKKIVKSCKKIV
FT                 KYCKKSNLQHTLETTLKSACPTRWNSNYKMMKSILDNWRSVDKILGEADIH
FT                 VDFNKSSLKVVVDILGDFERIFKKLQTSSSPSICFVLPSISKILELCEPNI
FT                 LDLSAAALLKERILENIRKIWMANLSIWHKAAFFLYPPAAHLQEEDILEIK
FT                 VFCISQIQVPISYTLSLESTETPRTPETPETPETPETPETPETPETPETPE
FT                 TPESLESPNLFPKKNKTISSENEFFFPKPVTESNSNFNESPLDEIERYIRQ
FT                 RVPLSQNFEVIEWWKNNANLYPQLSKLALKLLSIPASSAELKECFP"
XX
SQ   Sequence 3016 BP; 1019 A; 561 C; 578 G; 858 T; 0 other;
     cagagaactg caagggtggc acttttttac cactcgactc acaccctaca attttgtgtg        60
     cgggtgctac tcgccacgca catcgcgggt acttacaaac acacagtata aatctgaaca       120
     tgcagacaag acaccccgtt gtgtgcgcac ccgaatcaat acggtgtttt gcgtcgcggg       180
     tgccgctcac acagtgccta aaaagggatg agtgagaaaa acacttgtgg gtataccgtt       240
     aaacacatgg gtgtttccaa aaatactcgg gtgtttccaa aaatactcga gtggtctcgt       300
     aggtagtcga gtcaaatggc gccatacata atgattgttg agttcttgtg tctttggtcc       360
     agtgtctcgg ctgttaattg cccctttttt gttttttacg atgcaattac tagcttgtta       420
     ggattcagta ttatttggaa gccaaaggaa aaggtcacaa taatggcaga agcggctgat       480
     ttcgttaaaa ataaaattaa caatggaaca tactcagttg ccaataaaca taaagggaaa       540
     agtgttattt ggagcatttt atgtgacatt ttaaaggaag atgaaactgt tctggacgga       600
     tggctgttct gcaggcaatg ccagaaagtg ctcaaatttt tacacaaaaa cacctccaat       660
     ttatcccgcc ataaatgttg tctaacatta agacgaccaa cggaattaaa aattgtttcg       720
     gaaaacgaca agaaagtagc tattgaaaaa tgcacccaat gggttgtcca agattgtcgg       780
     ccgttttctg cagtaaccgg agccggattt aaaaatttgg tgaagttttt cctacaaatc       840
     ggcgctatct atggggaaca ggtagacgtc gatgacttac tacctgatcc aacaacatta       900
     agtcggaagg ccaaatcgga tgcagaagag aagaggagtc taatctcgtc cgagataaaa       960
     aaagctgtgg atagcggaag agcaagtgcg accgtcgaca tgtggactga ccagtatgtc      1020
     caaagaaact ttttgggcat cactttccat tacgaaaaag aatttaaact ttgtgacatg      1080
     attttgggac taaaatcgat gaattttcaa aaatcgactg ccgaaaacat tttaatgaaa      1140
     attaaaggtt tattttcgga attcaatgtt gagaacattg ataatgttaa gtttgtgact      1200
     gacaggggag caaatataaa aaaggcttta gagggcaata cccgtttaaa ttgtagcagt      1260
     cacctgttgt caaatgtttt agaaaaatcg tttaacgagg ccaatgaact caaaaaaatt      1320
     gtgaaatcat gcaaaaaaat cgtgaagtac tgcaaaaaat caaatttgca gcatactcta      1380
     gaaaccactt tgaaaagcgc ctgtccgact agatggaact ccaactacaa aatgatgaag      1440
     tccattctgg ataactggcg tagtgtggat aaaatattag gtgaagctga tatccatgta      1500
     gattttaata aatcatcttt aaaagttgtg gtagatattc taggagactt tgaacgaata      1560
     tttaagaagt tgcaaacatc tagctcacca tctatatgct tcgtattgcc atccatctct      1620
     aaaattttag aattatgcga gccgaatatt ttagaccttt ctgcagcagc attgcttaag      1680
     gaaagaattt tggaaaatat tcgtaagatt tggatggcaa atctaagcat atggcataag      1740
     gcggcatttt ttttatatcc acccgcagca catcttcagg aagaagatat tcttgaaata      1800
     aaggtgtttt gcatttcaca aattcaagtc ccaatttcat acacattaag cttagaatct      1860
     acagaaactc caagaactcc agaaactcca gaaactccag aaactccaga aactccagaa      1920
     actccagaaa ctccagaaac tccagaaact ccagaaactc cagaaagtct agaaagtcca      1980
     aacttatttc caaaaaaaaa caaaacaata tcttctgaaa acgaattctt cttcccaaag      2040
     ccagtaactg agtctaattc caacttcaat gaatctccat tagatgaaat tgaacgatat      2100
     attagacaaa gagttccatt gtctcaaaat tttgaagtaa ttgagtggtg gaaaaataac      2160
     gcaaacttat accctcagtt gtcaaagtta gcattaaaac ttttatcaat accagccagt      2220
     agcgcagagc tgaaagagtg ttttccctag caggtaatat aataacagaa aagcgaaata      2280
     gattatgccc aaaatctgta gatagcctcc tttttttgca ttcctattac aaaaacctaa      2340
     acaactcgca atagatattc cttcttataa gtatatttta tattattaat tcttattatt      2400
     tgcttaattt ttgtataagt gttaagtatt aagtataagt attaattaat aatatataag      2460
     attgttattt gttaagacat tagatgcaaa atcctaaaaa tgtgaaagta atgaagttcc      2520
     ttatatttaa tagatacttt ttaagcccac tatgttttta ttatttagat tgagacatta      2580
     aaaaacgtaa aaatcaacaa atgccgtctt taattgcaat tactttatgt gtttgaaatg      2640
     ggaggcaccc attgagtcca tcaaagagca aagacatgag cacaaaaatt ttcttgggta      2700
     ttccctttta cccttcattt cttatacccg tcacgcttcc acccatacaa attttaggcg      2760
     tacaaaaaat gagaactgca gcccgcatac aaaaaatgac ctgcggccga tcgttgactg      2820
     tgcgtccact cacccatacg gctcttgcgc agcaggcctc gggtggtttt tttactcgta      2880
     acaaaaacac aacgtcggta aaacactcga gtattttgtg ttgccgcaag tagggtgtca      2940
     aaaaaaacgg ggtgcctaga gtaccgagtg tttatcgggt ggacgtagag tgcgagtggc      3000
     gggctgcagt tctctg                                                      3016
//
ID   Hogri1      repbase;    DNA;    INV; 3437 BP.
XX
AC   .
XX
DT   10-OCT-2009 (Rel. 14.10, Created)
DT   11-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Hogri1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hogri1.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-3437
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1281..2219
FT                 /product="Hogri1_1p"
FT                 /translation="MLGNVIESAFKEVDALKDMLNQAKELVKYMENSGAFL
FT                 NLETPLVNYSPNEWKSIYHMLKSIESHWTELINLCGDISGHNQQEISSVVN
FT                 LLGHFEKCCRTLEDENLPTLHLVIPHLHRLRKQCSQPSQTTVESNMKLKLM
FT                 DLLESLVQNHIVEFHKMAMFLFPPTNQLLQCTRTERNQTIEKCRMLMKRFC
FT                 PQESSQNCDTLATVKQEEEDDLFSDFVTAHTPEDMILKEIRRYSDLQVPLC
FT                 DGYNVLNWWYFHKDNFPLLYPLSCRILGTPASSAASEKVLAKAQSLLTHTN
FT                 FSHVSHHCIANKIMFLNNNSY"
XX
SQ   Sequence 3437 BP; 1072 A; 675 C; 707 G; 983 T; 0 other;
     actcatttat atatatatag gtatatggtg agcgcaatta tacaattcat ttaatcacac        60
     atgtttaata aatatttaaa tatttcaaga atcaagcaca taatgaaaac acagtcgatt       120
     tgctacagca cggcaacagt tcgatcaaaa atcgaaactg gcgaatttaa ggtgatttcc       180
     aagcgaagtc gaagtcgagt gtggaatgta ttttcccggg ttgtggataa aaatggaacg       240
     gaactcagga atgtggtttg ccgatcatgt ccgagtatct tcaagttcca cggcagcact       300
     tcgaatttgg ttaggcacaa gtgctacaga aatgccattg attttggcca aacaggctct       360
     gatgggaata agcgaatatc cagtgatctt gaaatgagca ctgaagatca ggattatggc       420
     gttgatttag atccactgga tgaagtgaag agttccgacg cattgctgga tgatgaggac       480
     acaaagggga gacttgcaca agccctcgcc gagtgggccg tcgagaattg ccgagccttg       540
     gatattttcg aggataccgg attaaggaag ctagcagcat tatttattga actaggcgct       600
     tattttggta cccaaatcaa agtggatgat ctcatgccgc agacagcggc cataactgcg       660
     aatatataca actgctatca agacaaattg gagaaggtgc gccgggatgt gtgtgtggca       720
     aggataaatg gattcagcat cacatgcaac acccgaacag ataattccat ggagaatacg       780
     cagctttgcc tgaccatgca ctacatcaag gatggtaagc tattcagtcg tctgctcaca       840
     gttgccagcc gggatgcgga gtcctgcaca ggtaattatc aaacttaaat aactcaaaca       900
     gaattattgc tcattgattc gaacaaaaac gttgagcttt tacttaatga atcagatttt       960
     taactcaata tttgaattgt gtgcactcaa atcggttttt aactatcatt tcaaattgaa      1020
     tctatgactt acatttaaat taatttttaa caatgatttc aaattgaatc tataataatt      1080
     cgattgaata tatttgaaga atatctcaca ttatatctaa tcaaaatttt atcgcaggtt      1140
     ctctattgaa aacacaaatc aatacaattt tgagtgattt ccagtgcgtg tgggaggaag      1200
     ataaaccaat ttttgtgaca tcgagtgagt ctatccgaga tgccatcatc ggagaagggc      1260
     aagtggattg cattagcaaa atgttgggca atgtcattga atctgcattt aaggaagtcg      1320
     acgctctgaa ggatatgtta aatcaagcca aggagctggt taaatatatg gaaaactctg      1380
     gtgcattctt gaacttggag acgccattgg tcaactactc gccaaacgaa tggaaaagca      1440
     tttaccacat gctaaagtct atcgagtccc attggaccga gcttatcaat ttatgcggtg      1500
     atataagtgg tcataaccaa caggaaattt cttcggttgt caatcttctt ggacactttg      1560
     agaaatgctg ccgaaccttg gaggatgaaa atttgccaac tttgcatttg gtcataccac      1620
     atttgcaccg actgcgaaaa caatgcagcc aaccgagtca aactacagtt gagtccaata      1680
     tgaagctcaa actgatggat ctcctggaat cactggtgca aaatcatatt gtcgaatttc      1740
     ataagatggc catgtttctg tttccgccaa ctaatcaatt gcttcaatgt acacggaccg      1800
     aaagaaatca gacaattgag aaatgcagga tgttaatgaa acgcttctgt ccccaagaga      1860
     gcagccaaaa ttgtgatacg ttagcgaccg tcaagcagga ggaggaagat gacctcttct      1920
     ctgattttgt aaccgcgcac acgcccgagg atatgatcct taaggaaata cgcagatatt      1980
     ccgatcttca agtgccactt tgcgatggtt acaacgttct caattggtgg tatttccaca      2040
     aagacaactt tccgctcttg tatccgctca gttgcagaat tttgggcaca cctgcgtcaa      2100
     gtgcagcctc ggagaaagta ttagcaaaag cgcaaagttt attaacccac acgaatttta      2160
     gtcacgtttc tcatcattgt atagcaaata aaataatgtt tttaaacaac aattcttact      2220
     aaactacaca ataagcaaat taattttaaa atatgaataa ctaaaaaata ttaaagggaa      2280
     gtgcaactgg ttcaaattta ttcaaatata tcgctgaact caaattgaaa cttgaatcaa      2340
     atatacgatt gtgatttatt cacatgattc gatattttag ccatatagtt ctgatagttt      2400
     gcggcggttg gccgatagcg aactgataaa tttcagtgct agcatacgct gcctctcgcc      2460
     gttgttcaat actcgcgcac agagaaaatt ttggaagaga agaagctagt tgttattcga      2520
     tctttcgtgc atttgaaaca aatagaattg tgtaaaatca actacaaagc gagcgcggag      2580
     cgtgtaaaat gcatttgtat gaaatcaggc ggtaaagcaa atgcatagat taagaagaat      2640
     gtgcgtgtgc accacgcaca cattgttaga tttttcggtc cccatttcgc tgctgctcac      2700
     aaactgacgt caacgttggc gtcgctgcct acgtcgccgt catcgtcatc atacgccttg      2760
     tcgtcaatga gagcgaagag cataacagtg tctaccaatt tgacggcata ttgtgcataa      2820
     aagagagaga gacaatggtg agcgcaacag caacaacaac gaagtcaaaa gaaaaatgtt      2880
     ttcatatttt atactgcctg tcatcgcgga aaagtggaaa attgcaaaaa accgcaattg      2940
     ccacggcaat aattgtgcac taattagccg attgctgacg cgacctaacc aaaaattgca      3000
     tttctctgtc aacagtgacc ccaaattgca acagctgatg ctgtgtggcc aggcaacaaa      3060
     aaaagaaaaa aatcattgtc acctctctgc cgctggccct ccgttgctgc tgctgctgct      3120
     gcactgcttc tgttattctc ttattgtgcc aagcacagtt ccaagctgtc ccccctcacc      3180
     cctgttgccg cccactgcaa agttcgccca gtgaatgatt cacatttttc ttttgctagt      3240
     ttttcttttt tcttctcttc tatgcttttt tatgtgaatt tttgtttttg ttgttgttgt      3300
     tcgctgtgcg ctgcgcgagt tgttggcaaa tgcgtgcgcg caattaattt gcaaaaaata      3360
     aaaaaaattc gaaaattgta acagtgctta taaatattta tgcattgact gctgtaaata      3420
     tatatttata aatgtgt                                                     3437
//
ID   HOMER       repbase;    DNA;    INV; 3789 BP.
XX
AC   AF110403;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Bactrocera tryoni transposon Homer putative transposase gene,
DE   complete cds.
XX
KW   hAT; DNA transposon; Transposable Element; HOMER.
XX
NM   HOMER.
XX
OS   Bactrocera tryoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
XX
RN   [1]
RP   1-3789
RA   Pinkerton C.A., Whyard S., Mende A.H., Coates J.C., O'Brochta A.D.
RA   and Atkinson W.P.;
RT   "HOMER.";
RL   Direct Submission to Genbank (01-DEC-1998)Entomology, University
RL   of California, Riverside, CA 92521, USA.
XX
RN   [2]
RP   1-3789
RA   Pinkerton A.C., Whyard S., Mende H.A., Coates C.J., O'Brochta D.A.
RA   and Atkinson P.W.;
RT   "The Queensland fruit fly, Bactrocera tryoni, contains multiple
RT   members of the hAT family of transposable elements.";
RL   Insect Mol Biol 8(4), 423-434 (1999).
XX
DR   GenBank; AF110403; Positions       1    3789.
XX
FH   Key           Location/Qualifiers
FT   CDS           349..2208
FT                 /product="HOMER_1p"
FT                 /translation="MAEKEDSIGCKIANGSYSLSGKRKGRSFVWNILSEIL
FT                 KPDGTLLEGFVYCRTCLKVLKYYNGQTSNLIRHPCCRNIKTSQELRTVTVE
FT                 DKNEAVKKFTSWVVEDCRPFSVVQGSGFIKLVKFFIKIGASYGEHVDVEDL
FT                 LPSATTISRNVQKCANEKKEELKEEINNIVSSGGASATIDMWTDNYVKRNF
FT                 LGVTFHYQKDLKFFDLVLGMKSMNYESSSGDNVLNKLSSMFKEYGVQNMSQ
FT                 IKFITDRGSNMVKALKQNIRLNCSSHLFSNVLDKSFEETEELTDVLASCKK
FT                 IVKYFKKANLQHLLPTSLKSQCPTRWNSNYGMIKSIIDNWFEINNIMTDNE
FT                 QSQRLLHVNVSILKVLVSMCKDFETVFNKLQLCSSPSLCYVLPSILKIKNI
FT                 CEFNNSDIAAISVLKENIRKKIEEIWVVNLSIWHKVATFLYPPAINMQPND
FT                 LDDIKNFCISQIQNNAISAPTSATSAGNDSLSPTAISPTLTTHFSFNESNQ
FT                 IDQSHSSSLCSKTGGDTFFFTYLVKRTTPQATEKPEDEVERYSREEVEMTE
FT                 NFNLMEWWQSNQSKYPHLSKFALQIHAIPASSAAAERSFSLAGNLITEKRN
FT                 RIAPGSVDSLLFLNTYYKNYNA"
XX
SQ   Sequence 3789 BP; 1254 A; 651 C; 687 G; 1197 T; 0 other;
     cagagatctg caacggacac acaatttccg tgcacactcg aacacttacc caaaaccggc        60
     ttgtatcgct ttctttgaac gagcagaagg attgctcgtt agcgactgtg cgcacgcgaa       120
     cgtgctgatc acaacactcg agtgtcgtgc atacgtgttc gtttgggttc gggtgttttg       180
     cgaatcaata tgttcgagtg tccgagtgta ggctcgagtg tccgagttta ggctcgagtg       240
     tgcaaagcat tttttgttta tgtataatcg ttagtacagt tgattaattt gctttgtgag       300
     tgttaggaat tttatatgat acatattaca tgatatatat tgaaaataat ggccgaaaaa       360
     gaagattcta ttggttgcaa aattgcgaat ggcagttaca gcttgtctgg taagcgcaaa       420
     ggccgaagtt tcgtatggaa tattttatca gaaattttga aaccggacgg aactttactg       480
     gaaggttttg tttactgccg cacttgctta aaagtattga aatattataa tggtcagacg       540
     tctaacctaa ttcgtcaccc atgctgcaga aatattaaaa catcacaaga attaagaacc       600
     gtcacggtgg aagacaagaa tgaagctgta aaaaaattta catcctgggt tgttgaagac       660
     tgccgaccat tttcggttgt gcaaggctca ggctttataa aacttgtgaa attcttcata       720
     aagataggtg catcgtatgg cgaacacgtc gatgtggagg atttgttacc gagcgcaaca       780
     acaatttccc gcaatgttca aaaatgtgca aatgaaaaaa aagaagaact taaagaagaa       840
     ataaataata ttgtgagcag cggtggagct tcagccacaa tcgacatgtg gacggataac       900
     tatgtgaagc ggaacttttt aggagttacc ttccactacc aaaaagactt gaaattcttc       960
     gacttggttt tgggaatgaa atctatgaat tatgaaagtt cttcgggtga caatgttctt      1020
     aataaactta gcagtatgtt taaagaatat ggtgttcaaa atatgagcca aattaaattc      1080
     attactgaca gaggaagtaa tatggttaaa gctttaaaac aaaatatacg tcttaactgc      1140
     agtagccatc tattttccaa tgtattggac aaatcattcg aggagacaga agagcttaca      1200
     gatgtgttag cttcttgtaa aaaaattgtt aaatatttta agaaagcaaa tttacagcat      1260
     cttctaccca cttcattgaa atcccaatgt cctactcggt ggaattctaa ttatggaatg      1320
     attaaatcca taattgacaa ttggtttgaa attaacaata taatgactga taatgaacaa      1380
     agccaacgat tattacacgt aaatgtatcc attcttaaag ttttggtttc aatgtgcaaa      1440
     gattttgaaa ctgtattcaa taaattacaa ctttgcagtt ctccatcgct atgctacgtt      1500
     cttccgtcca ttttaaaaat aaaaaacatt tgtgaattta ataatagtga tatagctgca      1560
     atttcagtct taaaggagaa tataagaaaa aaaattgagg aaatatgggt tgtcaattta      1620
     agtatatggc ataaggttgc aactttttta tacccacctg ctataaatat gcagccaaat      1680
     gatttggatg atataaaaaa tttttgcatc tctcaaattc aaaataatgc aatatcagca      1740
     ccaacttcag caacatctgc gggaaacgat tccttaagcc caaccgccat ctcacctact      1800
     ttgacaacgc atttttcttt caatgaaagt aaccaaatag atcaaagcca ttcttcttct      1860
     ttatgttcaa aaactggagg cgatacattc tttttcactt atttggttaa acgaaccacc      1920
     ccacaagcca cagaaaagcc tgaagatgaa gttgagagat atagcagaga agaggtagag      1980
     atgactgaaa attttaattt gatggagtgg tggcaaagta atcagagtaa atacccccat      2040
     ttatcaaagt ttgcattgca gattcatgca atcccagcca gcagtgcagc tgcggagaga      2100
     tctttttctt tagctggcaa cttaattact gaaaaacgta acagaatagc gccaggctct      2160
     gttgacagtt tgctgttctt aaatacatat tataaaaact ataatgctta atggttggga      2220
     gttatatcta aagtatgcgt gcaatgatag ttttataaac atattttcct ttatttatat      2280
     ttaatttcaa gagtgataaa aagcatggaa tgcgtttttt ttaatgattg aatgattgaa      2340
     atatcttttg tttatgcgaa gactgattta ataaaagtat attgaagaat gaaaacagaa      2400
     gtttttataa ttatataagc atatttgtcg ccaagaggtt tggcgggaca ggttattgaa      2460
     aacgtggtca atacccccaa aagtggacgt atgggcatcc tactctaggt tggatatttt      2520
     cattcattta aaaagtatta taatctgcaa taattcagaa tcacgatcac gcaaacaaac      2580
     aaagagtgtg aaactttgca ttatacactt cagaactcaa acgcattttg tacggacatt      2640
     catcttaaaa ttattttaat ttcgtatgac acttttagca agcttaggca gctaagatat      2700
     atacatttat atatttacat atatattcct tgcgctcgct atgattagga ataagcgaaa      2760
     tcttaaattt aataaactta tactagcaaa aatcaaaata tcattgctca tataaattcg      2820
     tatataaaat gtatgctaca attactatat agtagtccaa aaatatgaat tcttattttt      2880
     cacagaaata cttttgctaa aaaaggatct ttttcttttc ttatttttcc cagaaataca      2940
     tttgtaaaag gatcgtaatc cttttttatt ttcctcataa aagatttaaa cagttcaaga      3000
     gctcaaaaca tgcgctacat cagctaccta ctaaattttt caatagctca aagcatgcgc      3060
     tacatcagct cgaacctacc taccctacgc ctttgcgcaa atgattatct tatgataaca      3120
     aatgcccaca tatagatttg gcaatggcaa tagcaataga tttgacagtt agcaagacat      3180
     agattttatc ctgtcgagat gccccgtaag taagtatgaa tgtacatata tctatactag      3240
     ccactctctt tattgattgg tttttcccaa aacacaaaat gcagttgcag tcaagtcaca      3300
     ctgcttggaa acacacgtat gcatgtaaaa aagcaactat cattattctt ctctgattct      3360
     taactgggtc ttatgttatg gttatgcaac tatattttta attttaaaat gcgtcattcc      3420
     tttgatacat gcatacatat agtttaaatg ctgtatttca atgatattgg ctgttaaagt      3480
     gtatacagca ttaataattt ctcatatttt tgctcagaaa aatgtgatac acttcttcta      3540
     catccgtgtt ctgtccgagt atccgtgcaa tagttgaaca aatttcgggt tagcttcggg      3600
     tgtcgagtgt ggacactcgc ttgtgatcgt tttgaagaga gtatgatcga acagactcga      3660
     acacacagaa agcagctgcc gggtgtgcca ctcgatcgaa cccattgctg ccgagtgtgg      3720
     cgctcgctcg tgctcgattt ttaatgaggg tgatcgaaca tgttcgaaca cacccaatgc      3780
     agctctctg                                                              3789
//
ID   Homo1       repbase;    DNA;    INV; 2817 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo1.
XX
NM   Homo1.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2817
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           426..2240
FT                 /product="Homo1_1p"
FT                 /translation="MTSEEIKIKINRGVYKIAAKHKGKSIIWSILYDIYKE
FT                 DESVLEGWVFCNKCGKVLKFVANQTSNLSRHKCCLSLRQPTEAKKVSNLDK
FT                 ITATKKCLEWVVQDCRPFSAVNGIGFRSLVEFFVKIGATYGANVDIDDLLP
FT                 DATTLSRNAENDAEEKRAIISNDVKEAVDNNAASATIDMWTDRYVNRNFLG
FT                 VTLHYLKDFKLNDIILGLKSMDFEKSTGENILKKLKSIFTQFNVENINNIK
FT                 FVTDRGTNVKKALENNIRLNCSSHLFSNVLEKSFDEACELKDILHACKKIV
FT                 KYLKKASLQHKLSTTLKSPCPTRWNSNYNMVNSIVNNWSTINNILSETEGG
FT                 QKLIVVNISTLKIILLLLEDFERIFKELQTCSSPSLCYVLPSIAKIKLLCE
FT                 PNAEDVSSISVLKSRILVNVNTIWKENLSIWHKAAFFLYPPAAKMEHEELL
FT                 EIKNFCIEQMYNYVRFSNQPSQNNSCTLESNPASPNCPLEAKIPKRDMFVP
FT                 KTTFFFSQLVAQANNNLKSPPEEFESYSGERVTLTEDFEPIEWWKTKENCY
FT                 PLLSKLALQLLAIPSSSAAAERVFSLAGNIITEKRNRLGPKTVDNLLFLHS
FT                 FFKNNNL"
XX
SQ   Sequence 2817 BP; 990 A; 481 C; 480 G; 866 T; 0 other;
     cagagagctg caagtgtgcc aatttttgcc accttactca cactcaataa aatttgtgtg        60
     ccggtgctaa tcaacactgg ttcagcaaat cataaacaca cacttataaa aaattgtgtg       120
     agtgctgctc atgcaggcaa tatcttgctg tcactcacaa caatgtaccg ttttcttttt       180
     gcttgtcact caagtatttt tcgtcaacgc ttgccggtcc cacttacact tacagcgaac       240
     gtagaaaaaa agcgagagtg tgaaaagagc aatgtgtaac aaacacaagt agacaaaaca       300
     catgtatgac acccaagtgt tttacaggca ccatggtgta agtgtcaaag taacggttgt       360
     tttgattttg ctttagctcc tttcttagct tcctagttta cttcgtgttt gattttggca       420
     tcgaaatgac atctgaggaa attaaaatta aaataaatcg tggtgtttat aaaatagccg       480
     caaaacataa aggcaaaagc ataatctggt caattttgta tgatatatat aaagaagatg       540
     aaagcgtcct cgaaggttgg gttttttgca acaaatgcgg aaaagtctta aaatttgttg       600
     ccaaccaaac atcaaatttg tcgcggcaca aatgttgtct ctcattacga cagccaactg       660
     aagcaaaaaa agtttcaaac ttggacaaaa tcacggcaac aaagaagtgt ctggaatggg       720
     tagttcaaga ttgtcggcct ttttctgcag tgaacgggat tggttttcgc agcctggtgg       780
     aattttttgt aaaaatcggt gctacttatg gagcaaacgt cgacattgac gacctactgc       840
     ccgacgctac aacattgagt cgaaatgcgg aaaatgatgc agaagagaag cgagctataa       900
     tatccaatga tgttaaagaa gcagtagata ataatgcagc atcggctacc attgatatgt       960
     ggactgaccg atatgtaaat agaaattttt taggcgtcac tctgcattat ttaaaagatt      1020
     ttaagctgaa tgacatcatt ttgggcctaa aatcaatgga ttttgaaaag tcgacagggg      1080
     aaaatatttt aaaaaaattg aaatctattt ttacacaatt taatgtcgaa aacataaaca      1140
     acattaaatt cgtgacagat aggggcacca atgtaaaaaa agctttagaa aataatatta      1200
     gattaaattg tagtagtcat ttattttcaa atgttttaga aaaatcgttt gacgaagcat      1260
     gtgagcttaa agacatatta cacgcctgca aaaaaatagt taagtattta aaaaaagcaa      1320
     gtttgcagca caagttaagc acaacattaa aaagcccatg ccctactcga tggaattcca      1380
     attacaatat ggtcaattca atagtaaata actggtcaac aattaacaat atattaagtg      1440
     agacagaggg aggtcaaaaa cttatagtcg taaatatatc cactttaaaa ataatattat      1500
     tactacttga agattttgag agaatattta aggaattaca aacgtgtagc tctccttcat      1560
     tgtgctatgt tttaccctca atagccaaaa taaaacttct ttgtgagcca aatgctgaag      1620
     atgtttcgtc gatatctgtt cttaagtcaa gaatattagt aaatgtgaac acgatttgga      1680
     aagaaaattt aagtatttgg cacaaggcgg cttttttttt atatcctcca gcagcaaaaa      1740
     tggaacatga agaattatta gaaattaaaa acttttgcat tgaacaaatg tacaattatg      1800
     ttcgtttttc aaatcaacct tcgcaaaata attcttgtac attagaatca aatccagcaa      1860
     gtccaaattg tccacttgaa gcgaagattc ctaaaagaga tatgtttgtg ccaaaaacaa      1920
     cttttttctt ctcccaactg gtagctcagg ccaataacaa tttaaaatcg cccccagaag      1980
     aatttgaaag ttattctggt gaaagagtaa ctttaactga ggatttcgaa cccattgagt      2040
     ggtggaaaac caaagaaaat tgctatccgt tattatctaa gttagcattg caacttcttg      2100
     caataccttc aagtagtgca gcagctgaaa gagtattttc tttagcgggc aacataataa      2160
     cagaaaaaag aaatagatta ggtccaaaaa cggtagacaa tttgctcttc ttacactctt      2220
     tttttaaaaa caataatttg taatttaatt tttattttaa acttgactga aaaaaaaaaa      2280
     aaacagaata ttttgttatt tgcgatataa tgtttatatt tctcttatgt taagctttaa      2340
     tatatttagt ttgttaatta aatgaagtat tataatgttt atttaatata tttaatgaat      2400
     ataaaaaaat atatttttta tttaaatatt gcttttttgt tcactatttt ttcctattgt      2460
     gcatgcattt ccaacagcaa gtacgtaaac atgtacatac gtaaaaaaaa aaacacatct      2520
     caaccgaagg cctgcacaaa agaaacctca acacacacac acattgtatg cttcaatttt      2580
     tgtgtatctc ttttcaccca actttcttgc gacgctcaag cgtcggcata tgtcacacac      2640
     acatatgcaa aagaaatacc tactcacttt tgcagctagt gtgcacaaac actcaaatat      2700
     ttttgtgagg cgagcgattg tactcatttg tacggtgttt gaaaacaccc gggtgtcaaa      2760
     atcacccaac atttacccgg tgcaccttca gtaccggtgg cttgttgcag ttctctg         2817
//
ID   Homo10      repbase;    DNA;    INV; 3922 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo10 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo10.
XX
NM   Homo10.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3922
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1416..2828
FT                 /product="Homo10_1p"
FT                 /translation="MSSVESCLERALLYDTKSKRKRDIDRALTEMVVKDML
FT                 PCTIVENEGFIEYTRVLEPRYNLPSSRHLRDVLMLHLFKETSAKLAVILEN
FT                 VADIAITCDLWTSSTNVSFLSVTGHFVLDYSLKTVCLARQKLIDSTDHSAQ
FT                 NIANTLQDILNFWNILDKTVCVVTKNSSSMLEACEILKIQNHPCFAHTLNS
FT                 VVQDGLKLEDDAMKALIAKCKTIVKFFKQSSITNEKFKNVQENFASILLEE
FT                 SHSRWNSLHFMIERILASQEAINAVLLPIKSAPLQLTVDEIIILKDIDIIL
FT                 SLFQEASDKISGENYVSLVIPLAHGLFRKVHNLSSQLQTSVGERMKNTILK
FT                 SITKRLSTYEQRTVTRVATILDPRFKKDGFQLNTNAEKAAIFLQHELMNLT
FT                 NREPSINLDLESNTKTQDSLLDFLYQPVIRKPKNEKFDASYIKRQYLETPL
FT                 APLKMDPFLWMKVNICYQCLKIQFLH"
XX
SQ   Sequence 3922 BP; 1339 A; 722 C; 718 G; 1143 T; 0 other;
     cagatgttgt gacgtcacag ttcagtgcaa tcgtactgtt tgtgcctaca tacacacata        60
     cataaacatc tgtttgataa agcagagagt agacagagaa aaagggagag tgagaaatca       120
     gctcgattat ctcggccgta gtggttgaaa ccatcgatgt cactatcgat gtcaatgtac       180
     tctcgatgta ttgaactatc gaatagtcaa atgggccgat agtatcatcg atagcttgct       240
     tttcatcgct gtaatacatt ttggcgcact ttttgcaaaa gtcgaatcat agctcagtgc       300
     taaaaataca ataaaaatat cacgaactca aagctgcata ctgaaacaca ttaaaaaatg       360
     tgtaaataat ttctccgaaa aaaaaagtac ctcaaatgtg aaaaagaata tagaacaagc       420
     ggcttaaggt aaaatgaaaa atccagttat tcttattcag gtattaaatt tctttattaa       480
     atttccttgc aggctgatca gacaaatttt ccactgattg tggatcaagt gaaatagata       540
     taaatgcaaa acacgttttg ttaataaaaa tattttttgc cactatcaac aactaccgat       600
     tgtttctggt ttactatcgc caactatcga ttgcacacat catcgatagt ctgacacccc       660
     cacttggccg aatgcgtgaa attttgcttt cgatagcgcc atcgatagct tcgagcacta       720
     ctaaaaagtt cgatggtgcc accaatagta cggcttgcac atcactgaga cacactcttg       780
     cgtttttctg tatctgagag ccaagcggat ttgcaattga ttggagattt ctttttccgc       840
     attattaata ctctttaaat gcacacaaca gaatcaaatg gatagatttc ttctaaaagg       900
     taataatcat aacgcaattg agaagtatct taataacact gagttttctt taaggtaagc       960
     gtccgaattc gacgcgggct tgggatacca gcttcacgga ttctgataag aattctacgg      1020
     tcgaaaagcc aacaccaaag aaacaaaaaa ggatctcaga ggtttggaag tattttaaga      1080
     ggtccgacga cagactcttc gctaagtgtc tgtgctgcgg taaactttat aaaacgagcg      1140
     gaaacacatc taatatacgt gaccatttga aaagattcca ctcaaacgta tctgtacttg      1200
     attccagcgc atccgctgca gaagctttag tggataacga taacaacaag gacaccaatg      1260
     acaccaatga caaccatgac gacaacgacg acaacgatga caacaatgac gacaacgacg      1320
     acaacgatga caaagctgac cactacgacg acaaccacga caaaaatgag aacaacgacg      1380
     acaagatcgc gtctacaagc ggcagctgta gatccatgag ttctgtggaa tcttgtttgg      1440
     aaagagcttt attatatgac acaaaatcaa agcgaaagag ggacattgat agagctttaa      1500
     ccgagatggt tgtcaaggat atgctgccat gtaccatcgt tgaaaatgaa ggctttatag      1560
     aatacactcg tgtattggaa cctagataca atcttccaag tagcagacat ttgagagatg      1620
     tgttgatgct ccacttgttt aaagaaacat cggctaaact ggccgtgatt ttggagaacg      1680
     ttgcggatat agcgattacg tgcgacctgt ggacttcaag cactaacgtt agcttcttaa      1740
     gcgtcactgg tcatttcgtt cttgattata gcctgaaaac agtatgttta gcaagacaaa      1800
     aattaataga ttcaacagat cactctgctc aaaatattgc aaacaccttg caagatatat      1860
     tgaatttttg gaatatacta gataaaactg tatgtgtagt aacaaaaaat tccagctcaa      1920
     tgctagaagc atgtgaaata ttaaagatac aaaatcatcc atgcttcgct cacaccttga      1980
     attcggtggt acaagatggg ctaaaactgg aagacgatgc aatgaaagct ttaattgcaa      2040
     agtgtaagac gatagtgaag ttttttaagc aaagttctat aacgaatgag aaatttaaaa      2100
     atgttcaaga aaacttcgcc tctattttat tagaagaatc tcattcaaga tggaacagcc      2160
     tccactttat gatagagcgc atattagcat ctcaggaagc cattaatgca gttttattgc      2220
     caataaaaag tgcaccgctg caattgactg ttgacgaaat cattatatta aaagacatag      2280
     atataatatt gtcacttttt caggaagcaa gcgacaaaat atctggtgaa aattatgtgt      2340
     cattagtaat acctttagca catggtcttt tccgcaaagt tcacaatctt tcatcacagt      2400
     tacaaacttc ggtaggagaa agaatgaaaa atactatatt gaagtccata acaaagcgtt      2460
     tgtctacata cgagcaacgg acagtaacca gagtggcgac aatattagat ccgcgcttca      2520
     agaaagacgg gtttcagcta aatacgaatg ctgaaaaagc tgcaatattt ttgcaacacg      2580
     agttgatgaa tctgaccaat agagagccct caattaactt ggatttggaa tcgaacacaa      2640
     aaactcagga ctcactttta gatttcttgt atcaaccggt cattagaaaa ccgaaaaacg      2700
     agaaatttga tgcatcttat ataaagaggc agtatctgga gacaccctta gcccccctaa      2760
     aaatggatcc ttttttatgg atgaaggtga acatctgcta tcaatgccta aaaattcagt      2820
     ttttacatta aatttcattt caggcttccc agacggaatt cccacttgta aaatcattgc      2880
     tatttaagta tttatgcatc cccgcaacat ctgtagaatc agagaggctt ctcagaaagg      2940
     cggagcgaat tgtttctgac ggaagaacaa ggcctaaaga agaaaactta aacattttgt      3000
     tgtttttgaa ccaaaatctt tggattaagt caaaatacaa aaccctatat taataaatta      3060
     actaattttt tgtatgcata tatgtataaa aaaaataaat aaaacaagca aaatacagtg      3120
     aataaatagt atacgttaac aattttcatt gcttagtgac aactttaatt tcgattttat      3180
     agattacgct cttccagtca agtacttaaa gtggccctgt tgtcgtaaat taattctgaa      3240
     tatatagtgt gtttttgaga actactgatg gtatagactt gaaattggct taaatttgta      3300
     gtatatattc aaggggaata ccaaagatac atgtataagt tactataact tactattgaa      3360
     cgtattaatg tataataata catcccctag atagaggatt tctattttaa ttctttgatt      3420
     tttttgttct ttacgtttta taggaaatat cacaaaacaa tttgaaccac tgtaattttc      3480
     acgcatctac atatttacat catgttttga atggctaacc attcgtcaag ctcgacgcct      3540
     tctaaggtga gcaagttgaa caaattttca aagtgatgct cacgaacatt aggttttgac      3600
     ctggcaaacg cattgaaata tcgaacaata gaatttgaat gtcctggggg gtccgttgat      3660
     tcacgtatca tattgcgagc cgcaaacttg aaagcaatgt acagtctgtt acaggtattc      3720
     atatgactgt tccttagtct ctgaaattca ccgttggtat attgattgag taagtcatca      3780
     tctttgccaa ccagtaacat ttccttctgt gcgctaaact gttgaagagc ggcgtaatct      3840
     tctactaaag tggacgcttg tggagtccat tcgatgataa agtctttcca tttctcaagt      3900
     tcctctttat tcacaacatc tg                                               3922
//
ID   Homo11      repbase;    DNA;    INV; 2511 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo11 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo11.
XX
NM   Homo11.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2511
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           917..1405
FT                 /product="Homo11_1p"
FT                 /translation="MLIFAKLIGTGFRNYVQAILNIGAQYGTRDSHDLILS
FT                 RKKLTGNVMVAEYNRIKDLLTTDLPNKHMAFTTDMWTDQFTQRSFLCLSAH
FT                 YIDESFCLKTSILGVKEFLEEKKTGGNILEQVKYILLEYNLEDKRLSCACH
FT                 NLNLVMDDVLEKNLVEEIKTLLEK"
XX
SQ   Sequence 2511 BP; 859 A; 391 C; 470 G; 791 T; 0 other;
     tagaggtggg cacgggccgg gtttttatcg ggtacccgtg ggcacccgcg gttacccgtg        60
     ggtatgggct gaaaaatcta atttcgggct gggtgtgggc ggttgcgggt tagactgctt       120
     aaatccgatt tacccgatta aatttttact gttttattaa aatttaaaat gtataaattg       180
     tgtaatttgc aggtgctctg tacttgcctg caaaaacagg gttgctttcg acatcgataa       240
     ttttgtgtgc gcttgcaaat taagcaatta ttatgcattt aaatttgaat aaaactgtcc       300
     gctgacggaa atacaaatct taattttatt ccagcatttt gacaacaaaa tcaataagat       360
     tggttcgctg tttagaaaat gtagcaacgt aatattccgt taaatattta aatatttgct       420
     atacctgatt tcgtgtacaa atacgattaa tttttgtatc gatgatctct ataaaattgt       480
     cattacgatt aaaagcataa taagcattgt acaagaaaat gaacggtaat aataatgagt       540
     gtgctaaaac aaaatgtgaa gtgcaaagag caattagtgc caatcacaat atgtacaaat       600
     tgatagaaaa ttcttctgga aagagtgatg tttggaaaac tttcaagatt gtggaattcg       660
     atggaaagcc tcttgatttt gtgtgctgct gcaaatgcaa gcttgttttg gcttttagcg       720
     tcaaaaatgg caccacaaca cttgctcggc acaaatgcgc tttcatgcct ccacctaatc       780
     aaccattgtt aaactttaca tcgaaggctg ttccgaagaa tgttctaaaa aacaattagc       840
     ttttgtagcc aaagacttgt tgccattaaa cgtaactgag ggtaggtaaa agataatttt       900
     ttttttatat tcatcaatgt taatatttgc taaacttata ggaactggtt ttcgtaatta       960
     tgttcaagct atattgaaca taggcgccca gtacggaacg cgcgactccc atgatctgat      1020
     tctgtcccga aaaaagttaa caggaaatgt tatggttgca gaatacaatc gaataaagga      1080
     tctgctcact actgacttgc caaacaaaca catggcattc actaccgaca tgtggaccga      1140
     ccagtttacc cagagaagct ttctttgctt aagtgcacat tatattgatg aatccttttg      1200
     tttaaaaacg tcaatattag gagtaaaaga atttctagaa gaaaaaaaaa ctggcggtaa      1260
     cattttagag caagtgaagt atatattgct tgagtataat ttagaagata agagactttc      1320
     ttgcgcctgt cataacttga acttagtcat ggacgacgtt ttagaaaaga atctcgttga      1380
     agaaattaag accttattgg aaaaataaat aaatcttgtt aaatatttta agcattcaga      1440
     gcttaacaaa aaactgagca aatcactaaa acaagatatt aaaacgcgtt ggaattcagt      1500
     tttcattatg cttgaaagca tttgggaagt tcaggaagag attaaaatgt tacttttaac      1560
     aaaaaatcat ctacaacgta tagcagatat tgatttcact ttaatggaat gtttaatttc      1620
     gtttttaaaa ccattcaaag attgttctga caaattgtca tctgaatcag agccaaccat      1680
     tcatatatat gctttatggt acgagaaact aaaaaaaatt gtaaaattga aatgtatgac      1740
     tccaatgtta tggaacatgt aaaagaaaag accttgaact ctttagagaa gcgttttcag      1800
     gcaacttccg ttcatttggt tggatcattt ttaaatcctc cattcaaaga attaagtttt      1860
     ttgccagctg aaaaaaaaat tatgtcttag aaaccgttaa atgcatgatg gcagaaattt      1920
     atgatatgca aaatgattca gttgaggacg cgaaaattga aaactctccg ccaaatttga      1980
     atcatgaatt tcaagagttt ttggacaaaa atcaaccaaa aaaaagaaaa cttgacgaac      2040
     ctgacaaaaa tgcaattgac ttagaaattg ataaatatta tgccacacgc tataattcaa      2100
     acttgtcaat cttaaatttt tggcaggagg caacgaacct taaattgttg caagtggtgg      2160
     ccaaaaatat tttatgtatt ccggtaagct ctgcaacaag cgagcgagta ttctcctctt      2220
     ctggaaaaat tttaaatgaa aggcgaacaa ggctatcaag cgcaaatctt gatatgctcc      2280
     ttttcttata taaaaacata taatatttct gtaaataata ttgtaaattt taagaataaa      2340
     atggttgtta tttttgagaa aaaaaaattg taatgtttga gaattaaatt tgttgtaatt      2400
     gtttcgggcg ggcgggttgg gcgcgggtat gacaattttt tttgctttcg ggtacggata      2460
     aaactttgaa cttctgaccg tgggcggaaa ttcggcccgt gcccacctct a               2511
//
ID   Homo2       repbase;    DNA;    INV; 2774 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo2.
XX
NM   Homo2.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2774
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           429..1823
FT                 /product="Homo2_1p"
FT                 /translation="MSLIRKHSEIWNHFEDIGSQQAKCKYCKCTISWKSLS
FT                 NLSRHLKSKHPTAMEPVVRQSEEITVVVQNPQPKIKNFVHKPLSDGKAEQI
FT                 DRQLVKMIAKGHHALRLVEEPEFKKLIDDVSHAPGYKLPTRKTLTTSLIPK
FT                 VRDELLGQILDNLRMATAVCLTTDGWTSLSNESYIAVTVHYINQDKTVLQS
FT                 HTIACEAFEESHTSENLFGFLKKIVGKWELQNKVMAIASDNAHNIVGAIKL
FT                 GNWKQVRCFAHSLNIIVQKALEKISSVRTKVKAIAEYFNRSSSGLKKLKDM
FT                 QAMFNLPQLKLTQDVPTRWNSTFKMFQRLSMLKEAVVAALSTRTDLILSPE
FT                 DWSLIEGVLPILQPFYQLTEEICAEKNVTLSKIIVLVGLLQKKMVTLNASI
FT                 ASHTLQEVVETLIFEMDGRFREVETNVLYAESTILDPRFKRRVFKSAEAFQ
FT                 NVVSDIKKKTDKNAHRCRTE"
XX
SQ   Sequence 2774 BP; 893 A; 529 C; 565 G; 787 T; 0 other;
     catttcatat ttatttaaga aaatatacca ttgcgctata aaacctaaac cacaagacta        60
     attaattatc gcaggggctt caacaaataa atttgttggc aacgaatcca cagtcagctg       120
     aatagtgttg ggttgctcat gagtgagtga acaaaaaaga gttgttcact aaactgagca       180
     actgaacatg ttcctctcga attgttcttt attgctcact tgttcttttt tgctcacttg       240
     ctcactatag ctcacttgtt cttttttgct cacatgctct tttgctcagc tgtttttcaa       300
     cactcactgt tgcctttgct catttttacg tactgttagc tcattttgcg ttcttccgtt       360
     ttttattgtc ttcaaactca cattttcgtg tttcgcgcca acttttgttt cgcttttaaa       420
     aattcattat gtcgctaatc cggaagcaca gtgagatttg gaatcatttt gaggacatag       480
     ggagtcaaca ggccaaatgc aaatattgca aatgcaccat tagctggaaa tcgctgagca       540
     atttgagccg gcaccttaaa agcaaacacc ctacagctat ggagcccgtt gttcgacaga       600
     gcgaggagat aacggttgtt gtacaaaacc ctcaaccaaa aattaaaaat tttgtacata       660
     agccgttgtc agatggaaaa gcagaacaaa ttgaccgcca gcttgtgaaa atgatcgcca       720
     agggtcatca cgctttgcga ttggttgaag agccggaatt caaaaagctt attgatgatg       780
     tctcgcacgc tccagggtat aagcttccca caagaaagac gttaaccacc tctttgatac       840
     ccaaagttcg tgatgaactt ttgggacaaa ttttggacaa tttgcgaatg gccactgcgg       900
     tatgtctaac aacagacggc tggacatcac tcagcaatga gagctatata gcagtaactg       960
     tgcactacat aaatcaggat aaaacagtgc tacaatcaca caccattgct tgcgaggcct      1020
     ttgaagagtc acacacttca gaaaaccttt ttggtttcct caaaaaaatt gttggcaagt      1080
     gggagttaca aaataaagta atggctatag cttcggacaa tgcccacaac attgttggtg      1140
     ctataaaatt gggcaattgg aaacaggtga ggtgttttgc gcactctcta aacatcattg      1200
     ttcaaaaggc tttggagaaa atcagcagtg tgcgcacgaa agtaaaagct atcgcagagt      1260
     actttaaccg tagctcatca gggctaaaaa agttaaagga catgcaagct atgtttaact      1320
     tgccacaact gaaactcacg caggatgtgc ccacaaggtg gaattccacc ttcaaaatgt      1380
     ttcaacgact gtcgatgttg aaagaggcag ttgtagcagc cctctccaca cggacggacc      1440
     ttattttgtc cccagaagac tggagtttga tagaaggtgt acttccaatt ttacagccct      1500
     tctatcaact aacggaagag atctgcgcgg aaaaaaacgt gacgctatca aagataattg      1560
     tcttagttgg gttgctgcaa aaaaaaatgg tgacactaaa tgcgtctatt gcaagccata      1620
     ctttgcagga ggttgtcgag acgctcattt ttgaaatgga tggcagattc agagaggtgg      1680
     aaacaaatgt tttgtacgca gaaagcacca ttctggatcc aagatttaaa agacgagtat      1740
     ttaaatcagc agaagccttt caaaacgtgg tttctgacat aaaaaaaaaa actgacaaaa      1800
     atgcgcaccg ttgtcgcact gaatgaagtt gtcccagctg aagaattggg ttctactgac      1860
     aaagacgaca tctggaacga gtacgacaat aagttccaac aagtaaccca ccccacaaat      1920
     acaattgctg ctggtattcg agaaatggat aaatatttag ctgaagagta tatatctcgg      1980
     aaggctgatc cattggaatg gtggaatcag cgaaaaatgc aatacccgca tttatataca      2040
     tatatgctaa gtcgcctatg catagttgca acatctgtgc catgcgagcg catattttcc      2100
     agtgctggtg aaacagtaac caaaagacgg tccctgttga agccgaccaa tgtggaaaat      2160
     cttatgattt tacataataa catgtaaatt ttatgtatgt tcctaaataa tagtattttt      2220
     atttaacgag aagactaata ttcccaatga agggaatttc tttaacttta actttttgtt      2280
     ttttattttc taatttagtt ttaagtacaa gttttataga acataaatac tcccaatgaa      2340
     aggaataaaa tctgaataaa gtttttggtt tgttttgtta aattagtttt aagtacaaga      2400
     cttataaaaa tctttaaaaa agatttaaaa tggaacataa cgtatttcat tgtctgttgt      2460
     gtgaagaatt cagtagcttt gagctgttca tgaacagtga gcaactgagc aatgtgagtg      2520
     agcaatgtga atgagcaact gagcaaagtg agcgagtcga ctcacttcga aaaaaagaac      2580
     aagtgaacat gttcaccaaa ttgagcaacg tttacccaac actacagctg aaactagccc      2640
     agcttagact cgggataaac cgaaggttcg ttacaactgg cgcccaacgt ggggccctgc      2700
     gataagagtg tgattagtga atacttgtga atatggtgcg agcgtgggta tacaatctta      2760
     aaaaagatga agtg                                                        2774
//
ID   Homo3       repbase;    DNA;    INV; 2359 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo3 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo3.
XX
NM   Homo3.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2359
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1540
FT                 /product="Homo3_1p"
FT                 /translation="MKDHLRSIHKIDQNVEVPAVPNTSGVAQISIAESFQN
FT                 MVEYSTDGNKTKRINDAIIYMISKDVQPFSIVENKGFIHLMNTVAPRYKIP
FT                 SRYLITKWVDEKFLEMKEMWKRLLNGKTLTLTMDVWSDQMSMRSYLGITAH
FT                 FQLELEMTSLTIGVLELSERHTSVYLTEMLESCCKDWHIEKELVTAVVTDN
FT                 GANVVKAVDLGFGRKKHIPCFAHTLNLIARSAMQRDSISACIEKVKGIVTF
FT                 FKQSCVASDSLRKVTDKVLIQDVATRWNSTYYMIERYLELKNFVNDIVISV
FT                 RNDVEILNGNELQLLNNIMPMLRPLEEATKIIGSDTYCTASMVIPMVNILK
FT                 TKLLNVDDITPEANDIKKFLLFEIDKRMGSIEKVCLKCHH"
XX
SQ   Sequence 2359 BP; 824 A; 381 C; 457 G; 697 T; 0 other;
     tagtgatgtg aaaaaacatc gatgcatcga caatcgatgt tttttggcga tgttttccga        60
     tgtttttatt gataccgatg ttaagtgatg catcgatgtt tgacagaaca tcgggcgttg       120
     aatttcacaa cattgcagaa catatgggta tactgccact tggaaaaatt cgcgaatttg       180
     ttttattttt ttaccccgtg tttgcaatgc caaagtaagt aaattgttga aaatatatat       240
     aaatatagtt atttgcaatt acaaatgtat ttattctaga ataacaacaa agacaagctt       300
     ttgctggagg cactttacta aaattgatgt aaatagcgca aaatgcaaca tttgcaacaa       360
     agttttgaag actgcgggta acacgaccaa catgaaggac cacctgcggt ccattcataa       420
     aatagatcaa aatgttgaag tacctgcagt acctaatact agcggtgtgg cacaaatttc       480
     tattgctgaa agctttcaaa atatggtgga gtatagcacc gacggaaata aaacaaaaag       540
     aatcaacgat gcgattattt atatgatatc aaaagatgtg caaccatttt cgatagtcga       600
     aaacaaaggc ttcatacatt taatgaatac ggttgcaccg cgttacaaga taccgtcgcg       660
     atatttaatt acaaaatggg tggatgagaa gtttttggaa atgaaggaaa tgtggaagag       720
     attgctgaat gggaaaacgc taacattaac aatggatgta tggagcgacc agatgtcaat       780
     gcggagttac ttgggcatta ctgctcattt tcagcttgag cttgaaatga cttccttgac       840
     tatcggagtt ttagagctaa gcgagcgtca cacatcagta tacctcactg aaatgctgga       900
     gagttgctgc aaagattggc acattgaaaa ggaattagtg acagccgtcg tcaccgacaa       960
     tggggcaaat gtcgtcaaag ccgttgacct aggttttggg cgaaaaaagc acataccatg      1020
     ttttgcacat accctaaatc taattgcaag atctgctatg caaagagatt caataagtgc      1080
     atgcattgaa aaggtaaagg gaattgtaac tttttttaag cagagttgcg ttgccagcga      1140
     tagcttaaga aaagtaacgg acaaggtatt gatccaagat gtggctacta gatggaatag      1200
     cacatactac atgattgagc gttacttgga gcttaaaaat ttcgtaaacg atattgtcat      1260
     aagtgttcgc aacgatgttg agatactaaa tggaaatgaa ttacagttgc ttaataatat      1320
     catgccaatg ctgcgccccc ttgaggaagc cacaaaaata ataggctcag atacatattg      1380
     cacagccagt atggttatcc caatggtgaa tatcttaaaa acaaaattgc ttaacgttga      1440
     tgacatcacg cccgaggcaa atgacattaa gaaatttctg cttttcgaaa tcgataagcg      1500
     tatgggttca atagagaagg tatgcttgaa atgtcatcat taatttattc taactctatt      1560
     actaaaatta agtctatgat aaaaccgatg gtcaaagact acaatagtaa tgatatcgtg      1620
     acaagcacaa ctaaatccga ttctttttgg gaccaccatc accagctggc acattctcat      1680
     gagcctgatg gggatattga tgtggagatg atagcgtacc tgcgaatgcc attagcgtca      1740
     tttgaaagca accctctaca agtatgggaa ggtatgaaaa acacatatcc caatttacat      1800
     aaaatggcgc tgcaattttt aacggtagtt tgatcgtcgg ttccttctga gcgggttttt      1860
     ttcagcggcg tcatatcttt taagccaaag gagaaatagg ttagatccaa accgactaag      1920
     ccgcatttta tttttgcaaa gtatcgacaa aaaatacttt tttgaaaaaa agtaattaca      1980
     ataattaaaa tttcgttgaa agcataaaaa aggactgcta aggaaacatt tattaatatt      2040
     atttattgtt atattattat tttattcatt ttgattctca atgtaattaa aaagactgct      2100
     aaggaagcat ttgttatatt attttttaat ctgttaatta tattgttaag taaaccaatc      2160
     agtagagaaa taaaaaaaaa actaataaag catttattta aaaggctttt aagaattgaa      2220
     ttaacgaaaa ataacggaat tggtagaaaa catcgataca tcgatgttta taaccgatgt      2280
     tttacacaac atcggtttat cattttgcaa acatcgatga acatcgacat cgaattttcg      2340
     acccaaattt acatcaata                                                   2359
//
ID   Homo4       repbase;    DNA;    INV; 3423 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo4 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo4.
XX
NM   Homo4.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3423
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1717..3000
FT                 /product="Homo4_1p"
FT                 /translation="LFKIVIFVLYGALHKGWGSCGAFNGHEIYERNDMHWF
FT                 VIIIYLFIFFIITFIYLYFFHYMYLGLNIRAKIVEILTQFGCDLELDNPVI
FT                 VTDRGSNMVKAFCGFEKINCANHLLNNAIEKAIDAVPAVGNIVSMCTKLVK
FT                 YFKKSGINFSLGLTLKSFCPTRWNTVYYLLKSIEINWIEITTILRDKNQIA
FT                 RIEGINVSEVGSIVRILEAFETVSKKIEASQRPTIHLILPNLNKLHKICEI
FT                 DYTDIENIQDLKLKLQTQISITILSNLSKYHNIALFLFPPTNKLKQFTDTE
FT                 KDTIINECKNIMKHFRAESIATTDITEAEEDEFAEYIEHQQVDSTTDIIGQ
FT                 EIAGYSNLNIAYHSNFDVLAWWNMHQHIFPLLHKTSCKIFCIPASSAASER
FT                 VFSKARNLITEKRCLLATNPDHINKIMFLNSNMN"
XX
SQ   Sequence 3423 BP; 1115 A; 621 C; 590 G; 1097 T; 0 other;
     tagagagctg catggcagca ctcataacct agcaaaattg agtccacttg aattgagact        60
     gagtgagtga atgagggaat acaaactagt tgatagaatg tgagttcgta tggactcaat       120
     gcctcatatc tcactccatt aagtaaaaag gatgagaata aataagacgt aaataggaat       180
     acaacattta accgaagcat acaggcgtcg aggcacttga gtttctgcat gcatatatct       240
     tcgtgtcaac acttcgtatt tgttcggctc cgtcgcttga gggttgagca gtgaaaaaat       300
     ctaatgccaa aatcagtgcg ctgcgagcgg tcaagcagaa agcacgcatt ttaatatgag       360
     gcctggttgc gcacttattt tttcttattt tccttctctc tctctgccct ttccatttag       420
     agagtatatc gaacttttga aagggtttgc cttgctcatg catgttagtg ttttcatgtc       480
     attatgttat gtttcgatct atccataatc ttattaaatt ttatattaat taattataat       540
     acaaagtatc taattgacca ttcagaattt actaagcgga ccaaaaagat ttatgcgggt       600
     cataaaattc atacttatgt actatttaaa aatgccagga tgcttatgcc aatcgcttat       660
     gtatttgctg tttattctcg tatgagacac taatatttgc taatcttttt tggtactcta       720
     tctatctccc tctctcaata tgagcgaaaa ttgaaattcc ttcgcgacga tcccgttata       780
     aacacactgt tgcaatctct tgctatatgt aacgcctgtg tgcgttagtc ttgctgccta       840
     tgtaatatgc ctgtagaaaa tgtgagcgaa aattgaaatt ccttcgcgac gatcccgtta       900
     taaacacact gttgcaatcc cttgctatat gtaacgcctg tgtgcgttag tcttggtgcc       960
     tatgtacaat gtaaattcga aaatttaccg tttgttttgt ctacttacaa tgcttaatag      1020
     tattaagaaa aagttcattc cttcgacacg ttgtcagcaa gcagaccttt cagctatgga      1080
     cggagaaaat aattctatcg aaattgtatg taaactgtgg ttgtttaaat tgacttgaaa      1140
     taaacatatg tacatatgta tgtaggttcc tgaaaacgca gaggatatta agcaacatct      1200
     tctgagtggc atatataaac tgactgcgaa gagaggtcgt agcgaagtgt ggaattattt      1260
     ctcagtaatt gaaaaagaaa atggaacgca attggctgac actgtagcct gtaagatgtg      1320
     ttattctgtt tttaagttta caggaagcac gtcgaattta gtcaaacata aatgttataa      1380
     agtgaacgcg aaagaaatac gcaaatcttt agctatcgaa gtaaatgctg aaacaaaaca      1440
     ggaatgtgta actatcgcaa ctgaatgggt tattaaaaac tgtcgccctc taaaaatgat      1500
     agacgattct ggtctaaaaa agttttcatc atttttaatt aatgttggcg caacgtttgg      1560
     ttccaatgtc gacgtagaca aattactgcc acacccaaca acaatatccc gaaatattat      1620
     aacattgtat gagtcacatt ttggcccaat aaaagccgaa atacaaaaat ataaatcctt      1680
     cggttatgct attaccactg acttatggac ggatagcttt ttaaaatcgt catatttgtc      1740
     ttgtacggtg cattacataa aggatggggt tcttgtggag cgtttaatgg ccatgaaatc      1800
     tatgaaagaa acgacatgca ctggtttgtt attataattt atttatttat tttttttatt      1860
     attactttta tttatttata tttttttcat tacatgtatc taggtttaaa tattcgagcc      1920
     aaaatagtag aaatactaac tcaattcgga tgcgatttag aattggataa tcctgtaata      1980
     gtaacagatc gcgggtcaaa tatggtgaaa gcattttgcg gcttcgaaaa aattaattgc      2040
     gctaaccacc tgctcaacaa tgctatagag aaagctattg atgctgtccc cgcggtagga      2100
     aatattgttt ccatgtgtac gaagcttgta aaatatttta agaaatccgg tattaacttt      2160
     tcattaggat taacattaaa aagcttttgc cctactcgct ggaatacagt ctattaccta      2220
     ttaaaatcaa ttgaaattaa ttggatagag ataacaacca tattaagaga taaaaatcaa      2280
     atagccagaa ttgaaggaat taatgtaagt gaggtaggtt ccatagtccg tatactagag      2340
     gcatttgaaa ctgtgtcaaa aaaaattgaa gcttctcaac ggccaaccat acatttaatt      2400
     cttccaaatt taaataaatt acacaaaatc tgtgaaatcg attacacaga tattgaaaat      2460
     attcaagatc tcaagctaaa actccaaacc caaatttcaa ttaccatcct ttcgaattta      2520
     tctaaatatc acaacatagc cctatttctc ttccccccca caaacaaatt aaagcagttc      2580
     acagacactg aaaaggatac tataataaat gaatgcaaaa acataatgaa acattttcgt      2640
     gcagaaagta ttgctactac tgacatcaca gaagcagaag aagatgaatt tgctgaatat      2700
     attgagcatc agcaagttga tagcactaca gacattatag gacaggaaat agccgggtac      2760
     tcgaatctaa atattgcata ccattcaaac tttgatgtct tagcttggtg gaatatgcac      2820
     caacatattt tcccattatt acataaaact agctgcaaaa ttttctgtat tccagcgagt      2880
     agcgccgctt cagagagagt attttctaag gctagaaact tgattactga gaaacgctgt      2940
     ttactagcca cgaatccaga tcacataaat aaaattatgt ttctcaattc taatatgaac      3000
     taaacaaata aatatattgt attacaaaat tacatagtct ttcgtttgtt tattatttat      3060
     gagaagggta tgcaaccatt cgtacgcata aagaatgtgt tgtcgctacg aaattgcaac      3120
     gctaaatttg ccgtgtgtct gccgtctggt ttgcacacac acaattacat agcccttcgt      3180
     gttttccttt tttttttttt ttcgttgctg gcagcgcagc aactcataca ctcggcaaag      3240
     caactcatat actcagactc aaacttattt attctttttc gctcaataca atattgtgca      3300
     tccaagtcat atacgagcgc actcacacac tcatacaatt ttcgttttgc gctcggtgcc      3360
     actcatctca atatgagcat tgttaattcg aagtcgtttt ttcggcactc atgcagctct      3420
     cta                                                                    3423
//
ID   Homo5       repbase;    DNA;    INV; 2432 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo5 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo5.
XX
NM   Homo5.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2432
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           628..2064
FT                 /product="Homo5_1p"
FT                 /translation="MISIASHFKSTVLYDSNSKRKAEIDKALTEMIVKDVQ
FT                 PYNIVDNEGFVQYTQILDPKYKLPSKTHLRDVLIYNYFKATTEKLSVILEN
FT                 IPDIAITCDLWTSSANACFLTVTSHFVHHNELKTVSLATKKLLNKINHCSQ
FT                 NIADTLREILIEWNILNKTVCIVTDNASSMLKACEILQIRNLPCFAHSINL
FT                 VVQDVLKVDDVIIQDLFTKCKSIVRFFKQSTIANEKFKLAQEGSAYTLLQE
FT                 TPTRWNSFYFMIERILKTNDAIAKVLLSTTNAPQPFTAEEILVLKDIEKVL
FT                 AFFQQASEQISGGKYVTISLIIPMAYGLLRKIESVSPLLQTLQGRTIKNIS
FT                 MESIKKRLSIYEQRTVCRMATILDPRFKKDGFQHSSNGEQAATFFENELAN
FT                 FSAKEFPINQPVARQTSSQSTLFFDFVGERSMTKVGNSRVDAILIKRQYLE
FT                 RPTVSQDTDPLLWMKVCLKLNYKFNIILFINQII"
XX
SQ   Sequence 2432 BP; 820 A; 456 C; 450 G; 706 T; 0 other;
     tagaggtgga gaacaatcga tgtcactatc gaaactatcg aatttagggc acaatcgagc        60
     tatcgaaata tcgatggtca aataatgcga tgcttatcga tagtgtcgtc gatatttttt       120
     cttacatcac tgcaatcaat gttggcgctt tattcatctt gaccgcagaa agtttagtta       180
     atctaacact attattatat tacattttta aacaaaatgg atcgcttcct ccaagaaggt       240
     aatgcccata acatattatt agaatgtatt ttgcaatatt tgtgtttgat ttaaggtaag       300
     cgcagcattg ccacggcgca cagtggggcc tctgtcggcg cgccggcttc tgattgcagc       360
     aatgcgaata ctgcagcaat aacgccctca caggcgaaaa gaaataagat ttccgaagtg       420
     tggaagtatt ttaagaggtc tggagacaaa caagttgcta agtgccttac ctgtggtaag       480
     gaatataaaa caagtggcaa cacatctaat ctccatgacc acttgaggag gtttcatcct       540
     ggtttagaga ttaaaaatcc agactctagc acacctgctg tatgtgctga agggaacgac       600
     cctgctgcca gtagttgtaa atcaaatatg atatctatag cgtcccattt caaaagtact       660
     gtcttgtatg actcaaattc caaaagaaag gcagaaattg acaaagctct aactgaaatg       720
     attgtcaaag atgtgcagcc ctacaatatt gttgataatg aaggctttgt tcaatatact       780
     caaattctgg atccgaaata caaactaccg agcaagacac atttacgaga tgtgctaata       840
     tataattatt tcaaggcaac cactgaaaag ctgtcagtaa tacttgaaaa tattcctgat       900
     attgcaataa catgtgactt gtggacatca agtgccaatg cttgtttttt gactgtaacg       960
     agtcattttg ttcatcataa cgaactaaaa acagtatcct tggctacgaa aaaactgtta      1020
     aacaaaatta atcactgttc gcaaaacatt gcagatacat tgcgagaaat attgattgaa      1080
     tggaatattc tcaataaaac tgtatgcatt gtaacagata atgctagctc catgcttaaa      1140
     gcatgtgaaa tattacaaat ccgcaatctg ccatgctttg cgcattcgat caacttggtg      1200
     gtacaagatg ttttaaaagt tgatgatgta ataattcaag atttatttac taagtgcaaa      1260
     tccatagttc gattttttaa acaaagcaca atagcgaatg aaaaatttaa actagctcaa      1320
     gaaggttcgg cgtatacttt gttgcaggaa acacccacca ggtggaatag tttttatttc      1380
     atgattgagc gcattttaaa aacgaacgat gccattgcca aagtcttatt atcaactaca      1440
     aatgcaccgc agccgtttac tgctgaggaa atccttgtcc tcaaagatat agaaaaggta      1500
     ttggctttct ttcagcaggc aagtgaacaa atttcaggtg gaaagtacgt taccatatcc      1560
     ctaataatac ccatggcata tggactttta cgcaaaatcg aaagtgtttc acctctgctg      1620
     caaactttgc aaggaaggac tattaaaaac atatcaatgg aatcaataaa aaaacgcctt      1680
     tccatatatg agcaaaggac agtatgcaga atggctacaa tattggatcc acgttttaag      1740
     aaagatggat ttcaacacag ctcaaacggt gagcaagcag caacattttt tgaaaatgag      1800
     ctagcaaatt tttctgccaa agagttcccg attaatcagc ctgtcgcacg acagacaagt      1860
     tcccagagta ctcttttttt tgattttgtg ggtgagcgat caatgaccaa agttggaaac      1920
     tcacgagtgg atgcaatcct tattaaaagg cagtatctgg agaggccaac tgtctctcaa      1980
     gatacggacc ctctgttatg gatgaaggta tgcttaaaat tgaattataa gttcaatata      2040
     attctattca ttaaccaaat aatataattt attttgcaga tgaatcaatc tgattttccc      2100
     tctattggaa gccttttctg caagtacctc tgcattcccg caacgtcagt agaatcggaa      2160
     agagcattca gcaaggcggg ccaaattatt tcagagaggc gaacacgact caaagaaaaa      2220
     aacattaaca ttcttttatt tttaaatcgt aacttttgga tcaaataaac aatatatata      2280
     tcttatattc aattcaaata tatttggctg ttggggtaca ctttcgatgg cgctatcgat      2340
     actgtcgatg acaccatcga caatatcgat ggttcaaaat aaacaatcac caaaaatcga      2400
     gagcgtccaa tatcgatagt tctccacctc ta                                    2432
//
ID   Homo6       repbase;    DNA;    INV; 3172 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   15-OCT-2020 (Rel. 25.10, Last updated, Version 4)
XX
DE   Homo6 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo6.
XX
NM   Homo6.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3172
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
RN   [3]
RP   1-3172
RA   Jurka J.;
RT   "Masking a Helitron insert.";
RL   Direct Submission to Repbase Update (13-MAR-2012).
XX
RN   [4]
RP   1-3172
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-OCT-2020).
XX
DR   [4] (Consensus)
XX
CC   The consensus includes a Helitron insert (masked by x).
CC   [4]: Termini determined and sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           516..2321
FT                 /product="Homo6_1p"
FT                 /translation="MPPQKRNFNINKYFDASDDDYVKCKKCERLLKKDRVF
FT                 NLKKHLLLHEIQIDDKGSEISDSVATSKNLKHQLVKVKINRKTLIRSYIGL
FT                 VTEESVPFHVLNSINMRNIIDPICQGLEAKHGINFKLNGSKCKSVLKHAAA
FT                 NVRREIKEESKNRLLSLKIDSATRLGRNIFGISAQFISKNEIKSQILGMVE
FT                 LKGADSSKSKNLAKEIISVLEKYEISLGQIVSITSDNGANMLKTSKILSQI
FT                 LYTSDEDLDETFIEQKNIEYIRQIHNFEKNENMFVTDIQICRCAAHTAQLC
FT                 ALDVTKHAVIKKCLFQCRNLTEYIRKSSNGYRDLFELKNFKLPQLDCATRW
FT                 GSTFNMVKKLHNAKSILDIIESVENQTEEENFEANDALWDFMESYITSMAP
FT                 LQKAIVQFQAEQLHYGNFYAVWLTCKLATNQILSKNSSNNDSLISIIASNL
FT                 LQSMEARTKTLVSNVGFDACLYLDPRFHNIIDNSQKERAIDFLXTLWEKIK
FT                 IFGSNPSMTYSNNSLDTDAGHTKDNNFELLDDFLSASMVVPNESTNVHAKI
FT                 ETLKLPVMKANTDVLCFWKYKKSTDPELYALSKVCFAIPPTQVSISVLINT
FT                 KIQS"
XX
SQ   Sequence 3172 BP; 1088 A; 539 C; 573 G; 971 T; 1 other;
     cagcgtttga aaatgctctg ctatttcgta gcatttcgtt gagctctcgc taccgctctc        60
     atttttgacg agagccgtag cagagttgta gcccaacaat aaaaagtttg tgctctgcta       120
     tgctctcagt ttcgtctcgt caaaaactac agcagtagcg agtagcacaa aaacaactga       180
     tgtgctacgc tctgccgtag cggtagctga aaacagatag cgaaagcgat agctgaaaac       240
     agcgaacgag atgaaatcat agcgagatga aaacggagcg agatgaaaac agagcgagat       300
     gaaaacagag cgatatgaaa acagagcgag atgagagtag gacaaacagc agattttttt       360
     tgtttgcttt tactgcaatt tttggtcggt tttcgaaatg caccgttact tttttcattt       420
     tgctttgtgg tagagagaaa atttgacact ttttcatttt gctttgtggt agagagaaaa       480
     tttggcactt tgaagtttta attcaatgtg caaacatgcc accgcaaaaa aggaatttta       540
     atattaataa atatttcgat gcaagtgatg acgattacgt taaatgcaaa aaatgcgaaa       600
     gacttttaaa aaaagatcgt gtttttaatt taaaaaagca tttattgttg cacgaaatac       660
     aaatcgatga taaaggaagt gagattagtg attctgttgc cacgtctaaa aatttaaaac       720
     atcaactagt aaaagtgaaa attaacagaa aaacattaat tcggtcatat attggccttg       780
     taactgaaga aagcgtgcca ttccatgtgc ttaattcaat taatatgcgc aatataattg       840
     accccatatg tcaagggctt gaagcaaaac atggaataaa ttttaaattg aatggaagca       900
     aatgcaagtc tgttcttaaa cacgctgcag cgaatgttcg acgcgaaata aaagaagaga       960
     gtaaaaatcg cctattatct ttaaaaattg atagtgcaac gcggcttggg cgaaatattt      1020
     ttggcatcag tgcacaattt ataagcaaga atgaaataaa atcgcaaatt cttggcatgg      1080
     tggaacttaa aggagctgac tccagcaaat ctaaaaatct agctaaggaa attatttctg      1140
     ttttagaaaa gtacgaaata tctctgggcc aaatcgtatc aataacatcg gataatgggg      1200
     ccaatatgtt aaagacttca aaaattttgt cacaaatttt gtacacaagc gatgaagatt      1260
     tggacgaaac ttttattgag caaaagaata ttgagtacat aagacaaatt cataattttg      1320
     aaaaaaatga aaacatgttt gtgactgata tacaaatatg ccgatgtgca gcccacactg      1380
     cacagctttg tgcacttgat gttaccaaac acgcagttat aaagaagtgt ttatttcaat      1440
     gccgcaacct tacagaatac atccgaaagt cttcaaacgg ctaccgtgat ttatttgaac      1500
     ttaaaaattt taaattacct caattggatt gtgctacaag atggggatca accttcaaca      1560
     tggttaaaaa acttcacaac gcaaaaagta tattggatat aatcgaatct gtggaaaatc      1620
     agacagaaga agaaaatttt gaagcaaatg acgctttatg ggattttatg gagtcatata      1680
     tcactagtat ggctccacta caaaaggcaa tagttcagtt ccaagcagag cagttgcatt      1740
     atggaaattt ttatgctgtt tggctaactt gcaaactagc cactaatcag attttatcga      1800
     aaaactcttc aaataatgat tcactaattt ctataattgc aagcaatctt cttcaaagta      1860
     tggaagcacg aacaaaaaca ttagtgtcaa acgtgggctt cgacgcttgc ctttatttgg      1920
     accccagatt ccataatatt atagataatt cccaaaaaga aagagcaatc gattttttaa      1980
     asacattgtg ggaaaaaatt aaaattttcg gttccaatcc cagtatgaca tactcaaata      2040
     attcattgga tacagacgct ggacacacca aagacaataa tttcgagctg ttagacgatt      2100
     ttttaagtgc cagtatggtt gttccaaatg agtcaactaa tgtccatgca aagattgaaa      2160
     cactaaagtt accagtgatg aaggcgaata cagatgtttt atgtttctgg aaatacaaaa      2220
     agtcaaccga tcccgaactt tacgccctaa gcaaagtatg ttttgctata ccgccaactc      2280
     aagtaagtat ttcggtttta ataaatacaa aaatacaaag ctaaaaacaa tatatacatt      2340
     tctttacaat tgcaggttac aatagagaga gcgttttcct cgttgaaact ggtgctgtcc      2400
     gataatcgaa atcgattaag tcatgagact ttggagaaca tacttttagt taggcttaat      2460
     tcgaatcatt tagatagtgc tatagagaat ttaagtttat ttgaaaatga agattagtat      2520
     atgtttattt actttagttt ctaatttcgt cactgaaata ggtttttttt ttaatttttt      2580
     attttttttt ttaatgtctt tatttgaaaa tgaatataaa taaagatttt gagtataatt      2640
     tctaatttag taactgaaaa aatgtttttt attatttgat ttctgtaact acacaattta      2700
     tccctacgtt aatttgacat caatcaaaaa ttgaagtaaa aataaacaca aaacaaaatg      2760
     cggctgctca aatcgctccc atttgccaga tctgacggca aaaaatctaa aatgacagcc      2820
     ctgctcatat cgctctcgca catttgtttt actctcatct cgctctgttt tcatctcgct      2880
     ctgttttcat ctcgctccgt tttcatctcg ctatgatttc atctcgttcg ctgttttcag      2940
     ctatcgcttt cgctatctgt tttcagctac cgctacggca gagcgtagca catcagttgt      3000
     ttttgtgcta ctcgctactg ctgtagtttt tgatgagaca gaactgagag catagcagag      3060
     cacaaacttt ttattgttag gctacaactc tgctacggct ctcgtcaaaa atgagagcgg      3120
     tagcgagagc tcaacgaaat gctacgaaat agcagagcat tttcaaacgc tg              3172
//
ID   Homo7       repbase;    DNA;    INV; 2451 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 16.09, Created)
DT   01-OCT-2011 (Rel. 17.07, Last updated, Version 4)
XX
DE   Homo7 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo7.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2451
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-76 (2009)DOI 10.1007/s10709-008-9259-5.
XX
RN   [3]
RP   1-2451
RA   Jurka J.;
RT   "Removed LTR from the consensus sequence.";
RL   Direct Submission to Repbase Update (01-APR-2011).
XX
DR   [2] (Consensus)
XX
CC   Original consensus included a Gypsy-type LTR. Removed from the
CC   current consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..2021
FT                 /product="Homo7_1p"
FT                 /translation="MSGVWDYFKKCADGKTAKCTKCGQICQTSGNTTNLSA
FT                 HLIRKHPNLSTIEESKAAGPISTLLQKKYDASSARKKTLDSALTTYITSDR
FT                 RPYCVVEDKGFRHLVEVLDPRYQLPSRRTLRDVCIPNLFIEMKQKLREILD
FT                 KIEFCAVTTDGWTSKANENYLSVSCHFITEEFEMRTAVLSTTKLKEETNHS
FT                 AQNIANSLRDVFNEWGVAQKITAIVTDNASNMKSACEILSKSNVPCVAHTI
FT                 NLIVQECLANENLKPLLAKCKQIVGFFKSSTIAYAKFREAQNKENPLSLKQ
FT                 ECPTRWNSAYHMVKRFLETKDAICKVLLNTPKALSPLSADEIVILEDLEKL
FT                 LSPFEHATKSTSSSSLVTVSMVIPVCCGLLHNLESLKGNLATEEGERACTI
FT                 LIYGTRNRLLKYESRSNTRISTLLDPRFKKDGFLSPFNVSEAEKFLESELS
FT                 MFNALSEPHPSSSNLPAPKPAVQPHPLFDFLKKKKSEKIRSIRADSIIGLK
FT                 QYFNTENVEPSISPLDYWKVKIHNIRVNHF"
XX
SQ   Sequence 2451 BP; 835 A; 460 C; 470 G; 686 T; 0 other;
     tagtgctggg aaaaagatcg atctagcaaa cgatatatcg atgtttcata tccatcgaaa        60
     atatcgatgt agaaaacttc gatacttgat atatcgccat cactatacca ttaattcccc       120
     atcacttgaa ttaaaagcgt gggataagac tgtcaggtaa tttgcaaatt attttaacaa       180
     tataattcaa atactaacgt aaacccactt ttcatttagg attttggtgt tggtagtgtt       240
     gtaggtagag aaatggataa gtttttaaag agcaaggaca atggcgaagg taaatattat       300
     tttactgctt atgtcagcca cacacgtggt ctgcagcttt tgcgttttaa aacaatgtaa       360
     caaacacgca tttgtttgta gattgcgacg cggataagga aaatggagag gaggagatac       420
     cacgtaagag gaccaaatat ggtatgtctg gggtatggga ttattttaaa aagtgtgcgg       480
     atggcaagac tgccaaatgt acaaaatgtg gccaaatatg ccaaacaagt ggcaatacca       540
     caaatttgtc tgctcattta ataagaaaac atcccaattt gagcaccatt gaagagtcga       600
     aggctgcagg ccccatctca acgcttcttc aaaaaaaata tgatgcctca tcagccagga       660
     aaaaaacact ggacagtgcg cttacaacgt acattacgtc tgatcgtcgc ccatactgtg       720
     tagtggagga caaggggttt cggcatctcg tcgaagttct tgatcctcgc taccagcttc       780
     catcaagaag aacattgcgc gatgtctgca taccaaatct ctttatagaa atgaagcaga       840
     aactgcgcga aattcttgat aagattgagt tctgcgctgt tactactgac ggctggactt       900
     caaaagcgaa tgaaaactat ttatcagtta gttgtcattt cattactgaa gagtttgaga       960
     tgcggacagc ggttctgtca actacaaaac ttaaagaaga aacaaatcat tccgcacaaa      1020
     acattgccaa ttctctacgc gatgtattca atgagtgggg agttgcacaa aaaataacgg      1080
     caatcgtaac tgataacgca tcgaacatga aaagcgcttg cgaaattctt tcaaaaagta      1140
     atgttccatg cgtagcgcat acaattaatt tgattgtaca agaatgtttg gcaaatgaaa      1200
     atttaaagcc tttattggca aaatgtaaac aaattgtggg tttttttaag agcagtacca      1260
     tagcttatgc gaaattcagg gaggctcaaa ataaggaaaa cccactcagc ctaaagcaag      1320
     aatgcccaac aaggtggaac agtgcctatc acatggtaaa aagatttttg gaaaccaaag      1380
     atgccatatg taaggtgtta ctcaacactc caaaggcatt gtcgccctta tcagcggatg      1440
     aaattgtcat tttggaagac cttgaaaagc ttttgtctcc ctttgagcac gcgactaagt      1500
     ccacatcatc gagcagcttg gtcaccgtgt cgatggttat tccagtatgc tgtggccttc      1560
     ttcataacct tgaaagcctc aaaggcaacc tagctactga ggagggtgag cgtgcttgta      1620
     cgatattaat atatggcaca agaaaccgac tacttaagta cgagtcgcgg tcaaatacaa      1680
     gaatctccac tctcctggac ccccgattca agaaagatgg atttttatca ccttttaatg      1740
     tcagcgaagc agagaaattt ttagaaagtg aactctctat gttcaacgca ttgtccgagc      1800
     cacatccatc ttcctctaac ctgccagcac caaaaccagc agtccaaccc cacccactat      1860
     tcgactttct aaaaaagaaa aaatctgaaa aaattagaag cattcgagca gattcaatta      1920
     taggattgaa acaatatttt aacacggaaa atgttgaacc aagtatttcc ccattggact      1980
     actggaaggt aaaaatacat aacataagag taaatcattt ttaattaaaa caatttcttc      2040
     acagatctca actgacaacg catttaaaag atgcgtgaaa aagtttttgt gcgtcccagc      2100
     aacgtccaca gaaagtgaac gaatgttcag caaagctgga cacatagtaa atgagaaaag      2160
     gagttgtctc aagccgcagc aagtagatat gctgttcttt ataaacaaaa atgattggac      2220
     gaagtaaatg atcttattaa ataatataat ctttgttaca tagtttagtt tagtttatat      2280
     gaaacgtttt ttaattttaa taagaaattc atcttttgtt ttttatatga aaactttttt      2340
     tttaattttg ggagttaaaa tatgtttatg aaaatatcga tacatcgatc tgagacccat      2400
     acataatatc gaaatatcga tctacgtaag ttcgatcttt tcccagcact a               2451
//
ID   Homo8       repbase;    DNA;    INV; 2538 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   15-OCT-2020 (Rel. 25.10, Last updated, Version 3)
XX
DE   Homo8 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo8.
XX
NM   Homo8.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2538
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
RN   [3]
RP   1-2538
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3]: Termini determined. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           244..1977
FT                 /product="Homo8_1p"
FT                 /translation="MDKFLRDASGKGIISIQLYLYFCICICMCYFCVDRKS
FT                 TDIDEGETQVKRTRYGQSEVWKFFTKSCNGSAKCLKCGKVYLTSGNTSNLS
FT                 GHLKRMHPTLTISELPKETGSILSFIDKKYEPSSNRKKALDSALMYYISSD
FT                 MRPFSVVENKGFRHLVKALDPRYELPSRSKLRDSCMTDLYKKMRENLKSVL
FT                 DRVEHCAITTDCWTSRANESYLTVTCHFITENFMLRTAVLSTKKLLDETNH
FT                 SADNISLTLREVLIEWQVIEKVTAVVTDNARSMIKACELLQKRHVPCFAHC
FT                 INLVVQGCLSKEKIKNVIGKCKSIVSFFKNSSIAYAKFRDEQKIEKPYNLK
FT                 QECPTRWNSAFYMVERILSTHAAIAKVLLNTPKAVLPLSADEILVLEDLKL
FT                 LLAPFDHATKRASSSSSVTTSIIIPIVYGLIHNLEKINVRLVSDDGREAYN
FT                 SLMEGIRQRLTQYEKRTVTRIATLLDPRFKKEGFLSIANASESQKILENEL
FT                 ATLYCVLPASPTNDIQCLPAPNCSSTEPELFEFLEENISKKVRSGRVDSIL
FT                 ALRQYFMSENLSSSSSPLDYWKVMFLRYKMI"
XX
SQ   Sequence 2538 BP; 847 A; 434 C; 489 G; 768 T; 0 other;
     tagtgctggg cgcaacatcg atgtaatatc gatacatcga tgtttgaaat aaaatgagaa        60
     acatcgatgt ttgtttttcg atgatcgatg ttgtgtataa atgttcccac cactaaattt       120
     actggtttct ttacattaag caaaaattgt gttgtgagct tggtaagaac aaatttgcat       180
     ttatttattt ctttctttta ttttttattt attatttttg taggatattg gtgctggtag       240
     gcaatggata agtttttgag agacgctagt ggcaaaggta ttattagcat tcaattatat       300
     ttatatttct gcatatgtat atgtatgtgt tatttttgtg tagatcgcaa atcaacagac       360
     attgacgaag gagaaacaca agtaaaaagg acaaggtatg gacagtcgga ggtgtggaaa       420
     ttttttacca aatcgtgtaa tggttcagca aaatgcctaa aatgtggaaa agtatatctt       480
     acaagtggca ataccagtaa tttatctggc cacttaaagc gaatgcatcc gacgctaact       540
     ataagcgagc ttcctaagga gacagggtct attttatcgt ttatagataa aaaatatgaa       600
     ccgtcttcaa ataggaagaa agctctcgac agtgcgctga tgtactacat aagttcagat       660
     atgcgaccat tttcggttgt cgagaacaaa ggattccgac accttgtcaa agctcttgat       720
     ccaagatatg agttgccatc tagatcgaag ttgcgggatt cttgcatgac agatctctat       780
     aaaaaaatga gagaaaatct caagtctgtc cttgatcgcg tggaacactg cgctataaca       840
     actgattgct ggacctcacg tgctaacgaa agttatctta cagtcacgtg ccattttatt       900
     acagaaaact ttatgttacg cacagcagtt ttgtccacca aaaaactctt agacgagact       960
     aatcattcag ccgataacat atccctaacc ctgcgtgaag tcctgataga atggcaagta      1020
     attgaaaaag tgactgcagt agtgacggat aacgccagaa gtatgatcaa agcttgcgaa      1080
     ctgttacaaa aacggcacgt gccatgcttt gcgcactgca taaacttggt tgtccaaggc      1140
     tgtttatcca aagaaaaaat taaaaacgta atagggaaat gcaagagtat tgtgtcgttt      1200
     ttcaagaaca gctctatagc gtatgccaaa tttagagacg agcaaaaaat agagaagccc      1260
     tataatttaa aacaggagtg tcccacaagg tggaatagtg ctttttatat ggtagagcgc      1320
     attttaagta ctcatgccgc catcgcaaag gtactgctga acaccccaaa agcagtgttg      1380
     ccactatctg cggacgagat tcttgtgttg gaggacttaa agcttctact cgctcctttt      1440
     gaccacgcga caaaaagggc atcatcgagt agttcagtga caacatcaat aattattcca      1500
     attgtatacg gacttataca taatttagaa aaaattaatg tccgactggt ctctgatgat      1560
     ggtcgtgagg catacaattc attaatggaa ggaattcgac aaagacttac gcaatacgaa      1620
     aaacgcacag tcacgcgaat agcaactctt ctggatccca gattcaaaaa ggagggcttt      1680
     ctgtcgattg cgaatgccag cgaatcccaa aaaattttag aaaatgagct tgctaccctc      1740
     tactgcgttt tgcccgcgtc tcccactaac gacatacaat gcttgccagc accgaactgc      1800
     agctctacag aaccagagct ttttgagttc ttggaagaaa atatttcaaa aaaagtacgg      1860
     agtggacgag tggactctat tttggcactt cgtcaatatt ttatgtccga aaatttatca      1920
     tcatcatcca gtccattaga ctattggaag gtaatgtttc tcagatataa gatgatttaa      1980
     aattatattg atattttatt tgcagatctc aaatgacaag ccagtcgtaa aatgcgctaa      2040
     gaaatattta tgcgtgccag caacctctat ggagagtgag aggatgttca gcaaagctgg      2100
     actacttgta agcgaaaaaa gaagctcgct gaagtcaaaa aatgttgaca tactggtgtt      2160
     catcaacaaa aacgattggg tcttaaatga gacccattag aatatgagat ggtaagtttc      2220
     ccatacttag attaatttta aataatgata ttaataacaa tgtaattgca gatcttaaaa      2280
     tacgataatt taaaaaaaaa gactgatgga gtgatatatt ttttattttt tatttacttt      2340
     ttttattgtt tcttttttat ttttaagttt tgaaatggat tacaaacgaa aatatataat      2400
     ttaattttat taagaatgta aacattgaat tcatttataa taaaaaaaaa ttccgatttt      2460
     tcatcgatac atcgatgttt tggattgaaa aacatcgaaa catcgatgtc atcaaacatc      2520
     gatgtatctc cagcacta                                                    2538
//
ID   Homo9       repbase;    DNA;    INV; 2542 BP.
XX
AC   .
XX
DT   09-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Homo9 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Homo9.
XX
NM   Homo9.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2542
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1583
FT                 /product="Homo9_1p"
FT                 /translation="MYLFMYVHMYIYLYDKINCFRITTKTSFCWKHFAKID
FT                 GNSAKCNICGKTIKTAGNTTNMKDHLRNVHKIREEDQTPVSNSGTPRQASI
FT                 AASFQNITDFGGEGQKTKKINDAIVYMIAKDIQPFSIVENAGFIYLMNTVA
FT                 PRYEIPSRYKVTKWLDEKYSQMKDLWRTRLTGKSISLTMDIWSDQMSMRSY
FT                 LGITAHFLLEQEMSSLTIGAMQLSERHTGPYLSEMLEICCSDWNIDKKQVT
FT                 AIVTDNGTNIKKAAEITFGPKIHLPCFAHTINLIARSAIQRESVNGCIAKT
FT                 KSIVAFFNHSGVASDHLRKATDKVLIQDVPTRWNSTYYMIERFLEVKTQVN
FT                 DILLSIPNDQMLLTGKEFELLNNVLTMLRPLEEATKIVSGDKYCTASTVIP
FT                 IVSIIKDKLEKLSDNTQEAKDMKEFLLLEIERRMGSIEQVYFKYS"
XX
SQ   Sequence 2542 BP; 864 A; 424 C; 489 G; 765 T; 0 other;
     tagtgatgtg aaaaaacatc gatgcatcga caatcgatgt ttttttggcg atgtttaccg        60
     atgttttccg atgtttttat tgataccgat gttaagcgat gcaccgatgt ttttaagcga       120
     tgcatcgatg ttttccaaaa cgtcgctggt ttgattttat acatattttg cgtatattgt       180
     cgtgtgttgc ctgaaagtgc agttatacaa acttaagcag caaatattgc aatgccgaag       240
     taagtaaata tagtaacatt acttatatgt atttatttat gtatgtacat atgtacatat       300
     atttatacga caaaatcaat tgttttagaa taacaacaaa gacgagtttt tgctggaagc       360
     atttcgccaa aattgatggc aatagtgcga aatgtaatat ttgcggcaaa acaatcaaaa       420
     ctgcagggaa cactacgaat atgaaagatc atctacgcaa tgtgcataaa ataagggaag       480
     aagaccagac acctgtgtct aacagtggga cgccacgaca agcttcaata gctgcaagct       540
     tccaaaatat cacggatttt ggaggagaag gacaaaaaac aaaaaaaata aatgatgcaa       600
     ttgtttacat gatcgcaaag gacattcagc cgttttcaat tgttgaaaat gctggattca       660
     tttatttgat gaatactgtc gcacctcgtt atgaaattcc ttcgcgttat aaagtaacca       720
     aatggctcga tgagaagtac agtcaaatga aagatctgtg gagaacaagg ctgactggaa       780
     agagcatatc cttaacaatg gacatatgga gtgaccaaat gtcaatgcgc agctatttag       840
     ggatcactgc tcattttctc ttggagcagg aaatgtcttc attgacaatt ggagctatgc       900
     agttaagcga gcgtcacaca ggaccatatc tgagcgaaat gctggaaatc tgttgctcag       960
     attggaacat tgacaaaaag caagtaacag ctattgtcac agacaatggt acaaatatta      1020
     aaaaagctgc tgagataacg tttgggccca aaattcacct gccctgcttt gcgcacacga      1080
     ttaatcttat tgctcgctcg gccatccaaa gggaatccgt aaatggatgt attgccaaaa      1140
     ctaaatcaat cgttgctttt tttaaccata gtggtgtggc cagcgaccat ttaaggaaag      1200
     caacagataa agtacttatt caggatgttc caacgagatg gaacagtaca tattatatga      1260
     tagagcgctt tttggaggtc aaaacgcaag tgaacgacat tttactgagt attccaaatg      1320
     accaaatgtt gcttaccgga aaggaatttg agctgttaaa caatgtgctt acaatgctac      1380
     gcccccttga ggaagcaacg aaaattgtca gcggagacaa atattgtacg gccagtacgg      1440
     tcatacccat tgtcagcatc atcaaagaca aattagaaaa attaagtgac aacacacaag      1500
     aagcgaagga tatgaaggag ttcctgcttc tcgaaataga aaggcgaatg ggatcgattg      1560
     agcaggtata tttcaaatac tcttaattgg tagtttcgtt aaatatatat ttgtaatgta      1620
     ctgttttagg tatcgattct agcaatggcc acgttgcttg atactagatt taaaaaatta      1680
     cattttaaag atccagttgc atgtgccaat gcactgatga aaattaaatc tatgtttaaa      1740
     gaaaatgaaa gcaaagaggt cataccaccg acaacaggga actcggattc tttttggaac      1800
     caccatcacc agctcgcgca gtgtcacaac ccgaatgtgg atatggacgt agaaataagc      1860
     tcttatctac gaataccgct tacttccttc gaaagtaatc caataactgt ttgggaaagc      1920
     atgaaatgta catatccgaa tttgtacaaa attgctatgc aatttttgcc ggtgatggga      1980
     tcatccgttc cctctgaacg ggttttctca gcggcttcaa atattttgtg ccgtaaaaga      2040
     aacagaatga cacctgagcg actaagtcgt attttgttac tgcaaagcat tgacaaaaaa      2100
     tatttttttt aattgtttct ttttaatatg tagtttataa gtaacattga aagataaaaa      2160
     aactgctatg aaagcatacg tttttttttt ttttttgttt gtttaataat ttttaattaa      2220
     ctgctatgaa agcatacgta ttattttttt ttttttttgt ttgttgttta ataattttta      2280
     agataagata agtctcatga atatgaaaag attgctataa gtttttcatt tttaagttaa      2340
     aaataattta agtgaaataa taacgctatg aaagcaccta tgaagaagct ttaaaacccg      2400
     aaaaaaacgt ttcttaatag aatgggaaaa tacatcgatg catcgaagtt ttgacccgat      2460
     gtataaacca aacatcgatg cttgacaacg aaaacatcta tgggcatcga catcgatgtt      2520
     tttactcaaa tttacatcac ta                                               2542
//
ID   HOPEBm2     repbase;    DNA;    INV; 4047 BP.
XX
AC   .
XX
DT   30-JUN-2010 (Rel. 15.06, Created)
DT   30-JUN-2010 (Rel. 15.06, Last updated, Version 2)
XX
DE   Bombyx mori retrotransposon HOPEBm2 DNA, partial sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART1;
KW   HOPEBm2.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4047
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of Target Specificity in R1 Clade Non-LTR
RT   Retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
RN   [2]
RP   1-4047
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (30-JUN-2010).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..384
FT                 /product="HOPEBm2_1p"
FT                 /translation="RLLEPRAWRCLRCFSTGHCLARCVSAVDRSGLCFRCG
FT                 QPGHKAAVCLAAPHCSLCAAAGRKADHRAGGKARPPASKNAERNRRRQVKR
FT                 RQKKRLAGGAPAGTLSPAEAFAPDSGGNGVGEGAMDVVQS"
FT   CDS           339..3614
FT                 /product="HOPEBm2_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RGQWSRGGSDGCGSVLMDHTYRFLQGNMNHSAGAQDM
FT                 LLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRTAMVPPLAM
FT                 VTRGPGIVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVI
FT                 LAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVNRGSIATCVRWTGES
FT                 IVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPAPAAGARGV
FT                 DPPQSASRSFPRWALKLLNRELLVEASMVAAWAPKRPQPVDVETEAEWFRG
FT                 AMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRASRRCTRHRRRR
FT                 RLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQNMERLLEALEADP
FT                 WGSPYKMWADKLVRGKLRPWAPSMTERLQPQQLRDIVSALFPQEREGFVPP
FT                 AMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLAL
FT                 ALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIV
FT                 LLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFREGRSTVDAILRVRSL
FT                 SDEAVSRGGVALAVSLDIANAFNTLPWTVIGGALERHGVPLYLRRLVGSYL
FT                 GARSVVCTGYGGTLHRFRSCRGVPQGSVLGPLLWNIGYDWVLRGALLPGLR
FT                 VICYADDTLVVARGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALW
FT                 FHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRL
FT                 MGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMAR
FT                 FLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSEL
FT                 RARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDD
FT                 WVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHT
FT                 LAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQ
FT                 KEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP"
XX
SQ   Sequence 4047 BP; 620 A; 1166 C; 1456 G; 802 T; 3 other;
     cgcctkctmg aaccgcgcgc ctggcggtgc ctmaggtgct tcagcactgg gcactgcctc        60
     gccaggtgcg tgagtgcggt tgaccgcagc ggactgtgct tccgctgtgg tcagcctgga       120
     cacaaggcgg ccgtgtgctt ggctgcgccg cattgttcac tatgtgcggc ggccgggcgc       180
     aaggctgacc accgggccgg gggcaaggcc cgccctccgg ccagcaagaa tgctgaacga       240
     aatcggcgcc gccaagttaa gcggcgtcaa aagaagcggt tggccggggg agcaccggcc       300
     ggcactttgt cccccgctga ggcgttcgcg cccgatagcg ggggcaatgg agtaggggag       360
     ggagcgatgg atgtggttca gtcttaatgg atcacaccta tcgcttcctg cagggaaaca       420
     tgaaccactc cgctggggct caggacatgt tgctccagac catggcggag tggtcaattg       480
     acgtggctgt ggtcgccgag ccatacttcg ttcccccagc ggatgactgt tggtttgggg       540
     acgttgatgg cttggcggcc atacatatca gaagaaccgc gatggtcccc cccctggcga       600
     tggtgaccag gggccccggg atcgtcgcgg tacagttaga aaatatcgtc gtgatcgggg       660
     tgtacttttc tccgaatcgg cctaccgtcg agttcgagcg gttcctggac gggctagagg       720
     tgatcgctcg tcacctcgct ccccgttcag tgatactggc gggggacttc aatgcgaagt       780
     ctgtcgcttg gggttcccca ttcacggacg ctcgtggtag gctgctggag gagtgggcgg       840
     tcgcggtcgg tctctgtatc gttaataggg gctcgatcgc gacttgcgtg cggtggacgg       900
     gcgagtctat cgtggacttg acgttcgcga gctcgcccgt cgcgcggcgc atcctcggct       960
     ggagagtggt ggtgggggcg gaatcgttgt ccgatcaccg gtatatccgg tacgatcttt      1020
     ctgcccctgc gccggcgccg gctgcgggtg cccgcggggt tgaccccccg cagagtgcat      1080
     cccggtcatt ccctaggtgg gcactgaagc tcctgaacag ggagctcctg gtggaggcct      1140
     ctatggtggc ggcgtgggcg cccaagcgcc cacaacctgt cgatgtggaa accgaggccg      1200
     aatggttccg gggcgcgatg caccgcatat gtgatgcctc gatgccccgg gtcggctctc      1260
     ggcactctgg acggcgacag tcgccctggt ggtcgcccga aattgcaaga ctgcgtgcgg      1320
     tctccattcg ggcgagccgc cggtgcacta gacaccgccg tcgccgccgc ctgcggcgcg      1380
     acgagcccgt cgcgttcgcg gaggaggaag ctcggctgca ccgcgaatat cgcgctgcga      1440
     aggacgccct gcggctggcc atcaggcggg ccaaggagca gaacatggag agactcttgg      1500
     aggcgctcga agcggatccg tgggggagcc catacaaaat gtgggcggac aaattggtac      1560
     gcggcaagtt gcgcccgtgg gccccctcta tgactgagcg tctccagccc cagcagctgc      1620
     gggacatcgt ttcggcgttg ttcccgcagg agcgggaggg ttttgtccct cccgctatgg      1680
     gcgggccgtc tgacaccgtc gacggccaag ctcctgctga ggtgcctcgt attaccgagg      1740
     cagagctccg ggtggccgtt gtcaagatga ctgcgaaaga cacggccccc ggcccggacg      1800
     gagtccacgg ccgggtattg gccttggccc tcggtgccct gggggaccgg ctccttgagc      1860
     tatataatgg ctgcttggag tcgggacggt ttccgtcgct ctggcggacg ggtagacttg      1920
     tgttgttgag gaaggagggg cgcccggtgg atacagccgc cgggtatcgt cctatcgtgc      1980
     tgctggacga ggcgggaaaa ttgctggaac gtattctggc tgcccgcatc gttcggcacc      2040
     tggtcggggt ggggcctgac ctgtcggcgg agcagtacgg cttccgggag ggccgttcga      2100
     ccgtggatgc aattcttcgc gtgcggtccc tctcggacga ggccgtttct cggggtgggg      2160
     tggcgctggc ggtgtctctt gacatcgcca acgcatttaa cactctgccc tggaccgtga      2220
     tagggggggc actggagagg catggagtgc ccctctacct ccgccggctg gttgggtcct      2280
     atttgggggc caggtcggtc gtatgtaccg ggtacggtgg gacccttcat cgtttccggt      2340
     cgtgccgtgg tgttccgcag gggtcggttc tcggccccct cttgtggaat atcgggtacg      2400
     actgggtgct gaggggcgcc ctcctcccgg gcctccgcgt tatttgttac gcggacgaca      2460
     cgttggtcgt ggcccggggg gatgatttta gggagtctgc ccgtctcgcc acagcgggag      2520
     tggccctcgt cgtcggaagg ataaggaggc tgggtctcga cgtggcgctc aataaatccg      2580
     aggctctgtg gtttcacggg ccgcggaggg cgccacccgt tgacacccac atcgtggttg      2640
     gaggcgtccg gataggggtc ggggtgcagt tgaagtacct cggcctcgtg ttggacagcc      2700
     ggtgggcctt tcgtgctcac tttgcggagc tggtcccccg attgatgggg acggccggtt      2760
     ctttgagccg gctgctcccg aatattgggg gaccggatca ggttgtgcgc cgtctctacg      2820
     cgggggtggt gcgatcgatg gccctgtacg gtgcacctgt gtgggctgag ccgcgcaacc      2880
     gggccactat ggctcggttc ttgcgccggc cgcagcgcac cgttgccatc agggtcatcc      2940
     gcggatatcg caccgtctcc ttcgaggcgg cgtgtgtttt ggcggggacg ccgccatggg      3000
     agctggaggc ggagtcgctc gctgccgact atcggtggcg cagcgagctt cgtgctcggg      3060
     gcgtggcgcg tgtccccgag agtgagctgc gcgcgcggaa ggcccattct cggcggtccg      3120
     tgctcgagtc gtggtcgagg cgattggcca accccacgtg ggggctacgg accgtcgagg      3180
     cggtttaccc ggtctttgat gactgggtga atcgtggcga gggacgtctc acctttcgtc      3240
     tggtgcaggt gctgaccggg cacggatgct tcgggaagta cctgcgccgg ataggggctg      3300
     agccgacgac gaggtgtcac cattgtggac acgacctgga cacggcggag catacgctcg      3360
     ctgtctgccc cgcttgggag gtgcagcgcc gtgttctggt cgcaaagata ggacctgact      3420
     tgtcgctgcc tggcgtcgtg gcgtcgatgc ttggcagcga tgagtcatgg aaggctatgc      3480
     tcgacttctg cgagtgcacc atctcgcaga aggaggcggc ggggcgagtg agggaaagct      3540
     ctcctcacta cgcagaaacc cgccgccgcc gagcaggggg tcgggaccgg ggtcgtatcc      3600
     gtgacctggc cccctaagag ctaggggtcc cacccgtttt gtgcggggag ggacccagac      3660
     gaggggtggc gtgctctgca cgctcacccg caataggaag ccgggtgatg gtagaccgcg      3720
     ttcccccgac cgctctgggg gaaggtgtaa cgcggcgcca tcaaagcggg ctctcggccc      3780
     gctgaacgag ggaaccggtg gtcgtttcgc tggcggccac cggtccggcg tccgtgggac      3840
     ggtgggatgg atgtaatgtg ctctgcgtca accctgtccc gccgtttcaa tagccccgac      3900
     tgggctccgg cccggtccga ggtagggcgc cggttgtgag cggcaggagt ttttagtgag      3960
     gttcaactcc cacatacccc acctgccgcg cgggtgggga tccggcgatt ttctcctgta      4020
     gaaaaaaaaa aaaaaaaaaa aaaaaaa                                          4047
//
ID   Hopers2     repbase;    DNA;    INV; 2756 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Hopers2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Hopers2.
XX
NM   Hopers2.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2756
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1521..2381
FT                 /product="Hopers2_1p"
FT                 /translation="MRKTIVLSFFYLFAGTLIRTKVEQCLNSFGLDLNDAI
FT                 IVTDRGSNMISAFKESAHIHCINHLLNNVVEKAFKAVPELLQIEKKCAKLA
FT                 KYFKRSGQNLKLELSLKGVCQTRWNTIFYTMKSIEHNWHDVVQILNEQNEM
FT                 NRLDGLNYSDITAITNVLSKIEEISKFLEADEYPTMHWVIPRIHALQKFIK
FT                 DANSDKDIEQKFSWSLSMHIDSVLLKYITKYHRIALFLFPPTNQLRQVDRT
FT                 LTIEECKEMMRSFLTDDKENLDLSATCSNKFEEFLADFIEPLSGVK"
XX
SQ   Sequence 2756 BP; 826 A; 505 C; 599 G; 826 T; 0 other;
     tcagattttg cactctagaa gatatagtca tcttctacga ttctgcgttt ttagttttct        60
     cgtatcgtcg aaattgtgga tgccacagat tttcgccctt tgtgggggcg gaagtgggcg       120
     gggcaaagtt ttgaaatatt tgtagagcag tgacatatca cagaagtctg gatccaaaac       180
     atcgttgctc tagctcttat agtctttgag cattaggcgc tgaaggggac ggacagacgg       240
     acggacgggc agacagacag ggctcaatcg actcggctat tgatgctgat caagaattag       300
     agccctgcac gagtacacac tacttcgtat taacagttag gagccacact gtgcacagta       360
     tcaaaacatg attcatgtat ccttttcaca ctatctttca attcattttc tttacttcat       420
     ttgctgactc attgactcaa ggcataattg tcgagtgact cctgtcaaat cgtatgactc       480
     gcactcacac tgttactaaa aacgttgtga cagagagaga gtgtatgagg tgtctctctc       540
     gctcaatttg ttgtgcattg ttttgctcac tgcagtgtgg aatgtgtgag tcaaacgaat       600
     cgaaagaaaa gaaaacgtca aaaagctaac gagaaggaca ttttcattta attttttgtc       660
     ggtgcttgta ctgtttgcta attactgaaa atggaaaatt cgattgttgg ttcttttgat       720
     tatgtaagtt tagtagaaaa atttatgcgt gtgtttctat tcgaatatta tatgcacatt       780
     taattcgcag tccttgtcac catctggctg cgaattacca ggcgatataa aagcaaaaat       840
     aatggctggc caatacaaaa ttagccaaaa acgtggcaaa agcaaggtgt gggaagtttt       900
     tggtcctgtc gttggagagg acagcaatgt tattccaaac atcgtggcat gtcgaaattg       960
     ttttacgatt ttcaagttta ctggtgccac gtccaatttg gtccggcata agtgctataa      1020
     ggttaccaaa tctgaagaaa acggtaacgt ttatgaacct gtcgtagatg ccgaaacgaa      1080
     attatcggtg acaaaggtcg tgacgaagtg ggtcgttcaa aattgccgac catttaatat      1140
     tatcagcgat tcaggactta aggacgttat aaccgtggcc cttgatattg gaagtcgttt      1200
     tggaccaaac ataaacgtta gcaacctgct acctcatcca acaactgtat cgcgtaatgt      1260
     cacagattta tacaataagg aacttcgagc tgtcacagaa gaaatagcct taatgaaagg      1320
     taatggctac actattacgt cggacgcatg gacagacacc ttttcgcaga agtcttattt      1380
     atgtgtaact ttacactata tatttaaagg aagcatgaaa aaccgtttgt tggaaatgat      1440
     ctgcattaac ggtgaatctg caacaggtac gtgtttatac ccttacagag ggtataaatt      1500
     atttacgaaa tgtgaggcaa atgaggaaga caattgttct ttctttcttt tatttatttg      1560
     caggcacatt aattcgtact aaagtggaac aatgtttgaa ttcttttggg ctagacttaa      1620
     acgacgccat tattgtaaca gaccgtggat caaacatgat atctgcattt aaggaatcag      1680
     ctcatattca ttgtataaat catttgctga acaacgtcgt tgaaaaagca ttcaaagcag      1740
     ttcctgaatt gcttcaaatc gaaaaaaaat gcgcaaaact ggctaaatat ttcaagaggt      1800
     ccggacagaa cttaaaactc gagttgagtc ttaagggtgt atgtcagacg agatggaata      1860
     caatttttta tacaatgaaa tcgatagagc acaattggca tgacgtcgtt caaattttaa      1920
     atgaacaaaa cgaaatgaat cgtttagatg ggttgaacta tagcgacatt accgcaatca      1980
     caaatgtact ctctaaaatc gaggaaattt cgaaattcct ggaggcggac gaatatccga      2040
     ccatgcactg ggttattccc cgcattcatg ctcttcaaaa gttcataaaa gacgctaatt      2100
     cagataagga tattgaacaa aaatttagct ggtccttgag catgcatatc gactcagtac      2160
     ttttaaagta cataacgaag taccacagaa ttgcgttgtt tttattccct ccaacaaatc      2220
     aattgagaca agtggataga accctcacga ttgaagagtg taaggaaatg atgcgttcat      2280
     ttctcactga tgacaaagag aacttagacc tgtcggcgac ttgttcgaat aaattcgaag      2340
     agtttctagc tgattttatc gaaccgcttt caggtgtaaa atgaaatgtt caaatccttt      2400
     ttgttggatc gttggggctc aaccctccga tctgttttat tgtcatttct gttctgtatt      2460
     ttacaattgt ggtttgggct tttgtaagcc aaaagccgcg gagctgcgct gccagtgacg      2520
     ccggcagcgg agcggcagaa ctatgtgttc ttatctctta tatgttaata tgtatatgct      2580
     cagcgctgtt ggtagcgaga gcgcgaggga agatatatgt gtgtatgcat gtatattagt      2640
     gccgtcaagt catgggaaca tgctgacgct gcacttgggt cgctcgaggc attcttgagt      2700
     gaatcgtaat acgatcaccc agaatgtctg ggactttatt gttacgtaaa cactga          2756
//
ID   Hopers3     repbase;    DNA;    INV; 3063 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Hopers3 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Hopers3.
XX
NM   Hopers3.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3063
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           186..2645
FT                 /product="Hopers3_1p"
FT                 /translation="MTPKKREKTNVWIYYVNNTESGLATCRMCNGTLKNNR
FT                 VSNLKTHLWNRHNIKVLKITPIETKVDESSDLDSEISEKIKRKQKTTAVHK
FT                 KQTLRQKRNALWKYFENNIDSGQAKCKICKAPLRNRVSNLKGHLFQQHDIN
FT                 LYYAKRQPMKKIRVNVNSLLLRNNKNDVWNYYENIIDSGIARCKTCNGTLK
FT                 NNRVSNLKTHLLKMHNLNLSVKKIQPIESASSEADSVHSVKIIPKEILKIN
FT                 VNRKQLLRSFIGLVTEDCIPLKVLDSPNMRNIIGPICDGLEASAGKPMSLK
FT                 ASSCIKHLQLVASNIRLDIKTELKNKLLSFRIDSASRLCRNIVGISAQFLS
FT                 DAQIKSRFLGMIELRKEPPKNVAVEVINVLKRYDIKVAQMVSATSDNGEPI
FT                 EESGDDCSNEEYLKKIELVEKSPNILLGHVRVSRCAAHSAQLCVLDVTKSS
FT                 EIINYIFTCRNLTKYIRKPSNRYHETFEQKQLKMPQLDCPTRWGSTYAMLE
FT                 HLKLAKDVIPKNESVRSNIQDGSYVIDSFWEFIESYCVVFGPLQKTILKFQ
FT                 EEQLHYGNFYAQWLKCKICTEKIVKDASQTLTTTIGNIILNSIDKRTKKFM
FT                 NSRRLVSCLYLDPRFHHTLTAEQKVKARDYLKQVWDRITEVNPEVTCSASM
FT                 VSIPDQSVGFDEEDELLNQYLTQGLLEANVGSKSDVYTKIETLQLPFHRID
FT                 VDVLSFWQAKENSDQELYAISKVCFAIPPTQVNSIHFYYKFKVLLNIFHSS
FT                 QVAMERQFSTLRLMLTDDWNQHGQETLENILLVKLNPNFLESAIDQLPIFQ
FT                 NDHDPPPDRIYKRRRFCS"
XX
SQ   Sequence 3063 BP; 1065 A; 582 C; 594 G; 822 T; 0 other;
     cgaatatcag aagtcgcggt caaagtacaa aaactaagca aaaactgtgc aagtagtgag        60
     cttttcgacg ttcgtcagaa tcacggctgg ctgcgaagat tgaagaagtc gcagtcgtga       120
     cggcagtcgt cgtcgatatt gtcaagtgtt ttccgaggct caataagtaa ctcaatcgat       180
     tgacaatgac gccaaaaaaa cgcgaaaaaa ctaatgtttg gatttactac gtaaataata       240
     cagaaagcgg gctggctacg tgcagaatgt gtaatggcac cttaaaaaac aatagggtgt       300
     cgaatctaaa aacacattta tggaatcgtc acaatataaa agttttaaaa ataaccccga       360
     tcgaaaccaa agttgacgag tcatccgatc tggattccga gatttctgaa aaaataaaac       420
     gcaagcaaaa aacaacagct gtgcataaga aacaaacact tagacaaaaa cgtaatgctc       480
     tttggaaata tttcgaaaat aatatagaca gcggtcaggc caagtgcaaa atatgcaaag       540
     ccccgcttag aaacagagtt tcaaatctga aaggtcattt attccaacag cacgatataa       600
     acttatatta tgccaaaaga caacccatga aaaaaattag agttaatgtg aatagcctgt       660
     tacttcgaaa caataaaaat gatgtttgga attactatga aaatattata gacagcggta       720
     tagccaggtg caagacatgc aatggcacac tgaaaaacaa tagagtttca aacttaaaaa       780
     cacacttatt gaagatgcat aatctaaacc tatcagttaa aaaaattcaa ccgatcgaat       840
     cagcctcatc cgaggcggat tcagtgcatt ctgtcaaaat aataccaaag gaaatattaa       900
     aaattaatgt gaatagaaaa cagttactta gatcttttat tggtcttgtg accgaagact       960
     gcataccctt aaaggtgttg gattcaccga acatgaggaa tatcattggc ccaatttgcg      1020
     acgggctgga agcttcagct ggaaagccaa tgagcttaaa ggcctcaagc tgcattaaac      1080
     atttgcaatt ggttgcatct aacataagac ttgacatcaa aactgaattg aaaaacaagc      1140
     tgttgtcatt cagaatagac agtgcctcgc ggctatgcag aaacatagtg ggaatcagtg      1200
     cacaattcct aagtgacgct caaataaaat cccgcttttt aggaatgatt gaacttagaa      1260
     aagagccacc caaaaatgtt gccgtcgaag tgatcaatgt tttaaaaagg tacgacatta      1320
     aagtagccca aatggtgtca gctacatccg ataacggaga gcccatagaa gaaagcggag      1380
     acgactgttc caacgaagag tatctcaaaa aaatcgagtt ggtggaaaaa tcacccaaca      1440
     tcctattagg acatgttcga gtctctcgct gtgctgctca cagtgcccaa ctttgtgtcc      1500
     ttgatgttac aaaatcctcg gaaataatta attacatatt cacttgtcgt aatttgacga      1560
     aatatatcag aaaaccatcg aaccgatatc acgaaacttt tgagcaaaaa caactaaaga      1620
     tgccccagct agactgcccc accagatggg gctcaaccta tgcgatgttg gaacatttga      1680
     aacttgctaa agacgtgata cccaaaaacg aatcggtgag aagtaacatt caagacggaa      1740
     gctatgtaat agactcgttt tgggaattta tcgaaagcta ttgcgtcgta ttcggtccct      1800
     tgcaaaaaac aatactcaaa ttccaagagg agcaactgca ctacggcaat ttttatgctc      1860
     aatggttaaa atgcaagata tgcactgaaa aaatcgtaaa ggatgccagt caaactttga      1920
     cgacaacaat tggaaatata attttgaact ccatcgataa gcgaacaaaa aaatttatga      1980
     atagtagacg tttagtttcg tgtttgtatt tggatcctcg attccatcat accttgacag      2040
     cagagcaaaa agtgaaagct agagattatt taaaacaagt ttgggataga atcacggaag      2100
     ttaatcccga ggtcacttgt tcagcatcga tggtttcgat tccagatcaa tccgttggct      2160
     ttgacgaaga agatgagtta ctaaaccaat acttgactca aggactactt gaagcgaacg      2220
     ttggaagtaa aagcgatgtg tatacaaaga ttgagactct tcagcttcca tttcacagaa      2280
     ttgatgtaga cgttctatcg ttttggcaag cgaaagagaa ctctgatcag gagctgtatg      2340
     caataagcaa ggtgtgcttt gcaataccgc ccactcaggt aaatagtatt catttttatt      2400
     ataaatttaa agttttatta aatatttttc attcatcaca ggtggcgatg gagcgacaat      2460
     tttctacgct acgactgatg cttactgacg attggaatca acatggtcag gaaacactag      2520
     aaaacatatt gttggtgaaa ttaaatccaa attttcttga atcagccatt gaccagttgc      2580
     cgatttttca aaacgaccac gatccccccc ccgatagaat ctataaaaga agaaggttct      2640
     gcagctgacg cagctggtcg ggattgtcga agaccgacat tgctgtgaga cccgcactcg      2700
     agtaaaagta ttgaagtatt tcaaattctt tttttctata aatttttttt tttttttttt      2760
     tttttctcaa cacttgtcac tttatctttt cgcacttgta aaataaaact cgaaatattt      2820
     atacagtttt tgtttttaag ttttcggctc ggcttgtcga cttcgacaaa agtgtgatgg      2880
     acattaaaaa aaccaatagt attaagtgca aaaattactg caaaacaaag cgtaaaactt      2940
     cgtcggcgac tgccgaaggt aaaaatcaac tggcactttt tcgctttgac gacttgcaca      3000
     ccagccgtgg gccgactgac gtcagttttc gttactcagc tttgactgcg aattcttatt      3060
     tcg                                                                    3063
//
ID   HOPPER_BD   repbase;    DNA;    INV; 3131 BP.
XX
AC   AF486809;
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Bactrocera dorsalis strain white eye transposon hopper, complete
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; HOPPER_BD;
KW   hAT transposon; terminal inverted repeat.
XX
OS   Bactrocera dorsalis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
XX
RN   [1]
RA   Handler M.A.;
RT   "A new hopper element from the hAT transposon family exists in
RT   the Bactrocera dorsalis white eye strain.";
RL   Unpublished.
XX
DR   Genbank; AF486809; Positions       1    3131.
XX
SQ   Sequence 3131 BP; 1092 A; 487 C; 565 G; 987 T; 0 other;
     tagtgttggg gactatcgaa tcaaaacaat caagttattc ggtggttcag caattttcat        60
     tcattcgata gttttcaaga aatcactcat tactattttt tcgttcattc gaattttttc       120
     gttcatacca atatttcgtt caaaacgaat attttgttcg atactaattc ttcgtttatt       180
     actatttttg cattcattag tattttttcg ctattgaatg atttttcgaa tgaatgattt       240
     tatgcaagta gatatctagc aaagattttt tgtacgaatt catttattcc atttcaagta       300
     aatggtatta tattcagcaa atgtacgaat aatgctgaaa ttgtgtgtat ttcaaaatta       360
     tgttgaatga tttatgtgtg ataatggaaa ttaaattgaa tgcatgtatg agtggtagaa       420
     gttaatagat gcttaaaata gatttaagtg aaaagtatta ataataataa atatagactt       480
     ataaagcgat aatgtaggag gcattataat taataagatg gctaaagtag attcatatgg       540
     tcatcggtat ttggcaagat taaatgacag tttctagtcg gtttgaaaaa atccaatggc       600
     tttgaaatta agcaggttgg caacttggtt acgtattgcg attcgaaatt gtagctatgt       660
     atacattcac ttaaccgttt taactgtcgg tattatttgc agcatcaata gtaaaacatt       720
     tgaattgggt cgcaacttat ataaatattg gttttagatt tttaattgca gtgttttctg       780
     tggtaatata aaatgtattt atgtattttg taaagaaaat gctgaaaatg tttttataca       840
     taattagata aaacaaaaat gcgccctgga ttaaagagat cagccgtgtg ggagtttttt       900
     actaagaatg gtaataacgt caactgcaat atttgtaaaa aaaatttaaa gtttgctggt       960
     aacacatcaa atatgaatga tcacctacga cgaaggcatc catcatcaca tagtgtgggg      1020
     gagacttctt cggcgatagt cgaacgagca cctgctgtaa gtgacttaga tatgccaagc      1080
     tgttcttcaa cgcaaagaga tgtgaactta acagtggaaa ctattgaaag tgagataagt      1140
     agtgcttctt tggtacctcc tgtgaacgta gaaactacaa gttcttcaac aatacccagt      1200
     agaaatattt caggtggtgg accattaaaa agaagggcaa tgcaaacaaa attatttgtt      1260
     acaagcacgc gatctgagct ttcggaaact gaaaagagaa gtatagatga gtctcttatt      1320
     aaaatggtta caagagatat gcaaccactc tctattgttg aaaatgaagg atttcgagaa      1380
     tatacaaaaa agcttcagcc tttgtattca atcccaaaca gaaaacttct ttccaacaca      1440
     atgttgcctt caaaatataa cgagacacgg aaaaagcttc atgccatttt gcaaaatatt      1500
     tcacaccttt ctataacgac agatatgtgg actactgaca gccagaagtc ttttttaact      1560
     gtaactagtc atttcatttg ggaaagcaaa atgaactcag cagtcctggc aactaaagta      1620
     gtgttcggct cacatactgc tcaaaatata gccacagaat taaaaagcat ttttgacgag      1680
     tggtcaattt ttaacaaaat agtgacgata gtgagtgata acggtgcaaa tattaaaaaa      1740
     gcgataaggg atatactcca aaaacaccac cacccatgtg tcgctcacac cctaaattta      1800
     tgcgttgtgg atgcgataaa gactgttcct cagattttag agcttataac gaaatgtaga      1860
     gctatagtaa catatttcca tcatagctct caagcagcag aaaaactaaa aaatatgcaa      1920
     aagcaaatgg gagtagctga acttaagatg aagcaagacg ttgctactag atggaactct      1980
     ggccttataa tgatggaacg tatatgcttg ataaaagaac cgctctctgc tgtactaact      2040
     tccttaccta gtgcaccgaa ctttctgaat gcatcagaat gggaaaggtt acgtgattcc      2100
     atcactgtat tgaagccgat agagcatatg acaatagaac tttcagcaca aaactaccca      2160
     acgatgtcac tagtggtgcc tatagtcaga ggactgcaat atgcaataag atcccagcaa      2220
     atgaaaacta cggagggaga atgcttgaaa agtagtttgt tggaagtaat ttcgagacga      2280
     cttggccaac cagagtctga caagatgtgt gccaaatcga ccttcttaga cccacggttt      2340
     aaaaagattg cctttggaaa tgaaagtaac tctagtaatg ctcaaaaatg gttgggagaa      2400
     gaggtatcag cattcataga gcggaaccaa aggactgcta cagccccagt catagaatta      2460
     cccgcggata aaagtaaatt atctctttgg actctacttg accaaaaagt agcggaagca      2520
     aaaactattt gtcacaacgc ccctagtgtt aatgcacata tttcgttgga acaatatctt      2580
     agacaagatt tcgttgagag acatcaaaac ccgttaaact attgggacag caaaaaggca      2640
     acttttccag aactctacga gctttccaac aaatatttat gtatacctgc tacttcagtt      2700
     ccttccgaaa gggttttttc taaagctggg caaataataa atgatagaag aaatagactt      2760
     aaaggtgaaa agctagatca aataatgttt ttaaatagca attttaatat ataattaata      2820
     tttttttgcg ttcttctgat atttatattt atatttatat ttattttata tgatattgaa      2880
     tatcttttct gtgctttact atttttatgt tttattaaaa tattgaatta aattaaacct      2940
     ttgtattggt ttaattaaaa atgaataaaa tgccagtact tttttgttgt ttgaagagca      3000
     cgcctttgct tagttattga atttgattaa ataaatgaat gaatgaatga acgaaaaaat      3060
     tcattcgata gtcaaaatca ttcagtcatt aacaatcgat agttgaaatc actcgatagt      3120
     tcccaacact a                                                           3131
//
ID   Hopseu2     repbase;    DNA;    INV; 4962 BP.
XX
AC   .
XX
DT   10-OCT-2009 (Rel. 14.10, Created)
DT   11-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Hopseu2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hopseu2.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-4962
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1351..3798
FT                 /product="Hopseu2_1p"
FT                 /translation="MAPKKREKTNVWIYYVNNTESGQATCRMCNGTLKNNR
FT                 VSNLKTHLWNRHNIKVLKITPIETKVDESSDQDSEISEKIIRKQKTTAVHK
FT                 KQTLRQKRNALWKYFENNIDSGQAKCKICKAPLRNRVSNLKGHLFQQHDIN
FT                 LYYAKRQPMKKIRVNVNKLLLRNNKYDVWNYYENIIDSGIARCKTCNGTLK
FT                 NNRVSNLKTHLLKMHNLNLSVKKIQPIESASSEADSVHSVKIIPKEILKIN
FT                 VNRKQLLRSFIGLVTEDCIPLKVLDSPNMRNIIGPICDGLEAAAGKPMSLK
FT                 ASSCIKHLQLVASNIRLDIKTELKNKLLSFRIDSASRLCRNIVGISAQFLS
FT                 EAQIKSRFLGMIELRKEPPKNVAVEVINVLKRYDIKVAQMVSATSDNGEPI
FT                 EESGDDCSNEEYLKKIELVEKSPNILLGHVRVSRCAAHSAQLCVLDVTKSS
FT                 EIINYIFTCRNLTKYIRKPSNRYHETFEQKQLKMPQLDCPTRWGSTYAMLE
FT                 HLKLAKDVIPKNESVRSNIQDGSYVIDSFWEFIESYCVVFGPLQKTILKFQ
FT                 EEQLHYGNFYAQWLKCKICTEKIVKDASQTLTTTIGNIILNSIDKRTNKFM
FT                 NSKRLVSCLYLDPRFHHTLTAEQKVQARDYLKQVWDRITEVNPEVTCSASM
FT                 VSTPDQSVGFDEEDELLNQYLTQGLLEANVGSKSDVYTKIETLQLPFHRID
FT                 VDVLSFWQAKENSDQELYAISKVCFAIPPTQVNSIHFYYKFKVLLNIFHSS
FT                 QVAMERQFSTLRLMLTDDWNQHGQETLENILLVKLNPNFLESAIDQLPIFQ
FT                 NDHDPPPIESIKDE"
XX
SQ   Sequence 4962 BP; 1571 A; 1028 C; 1020 G; 1343 T; 0 other;
     cggcttcatg ttgtactcgg taagggggaa agcctcatca gagaccaatg tatatgggga        60
     tacacggttc gagcgcggca gagcagacgg cgatggtacg tgaatgctgt agtcatccag       120
     gctgtatcgc aaatcagagt gcagccacac accagcgtcg ccaattttgg catctgttgc       180
     gacattcaca tagacgaacc tatacttggc gtcaacgatt accattagca tcatggaggg       240
     ttctccattg cttggcatgg gtcttgtttt gcaatgcttt ccttaaatat cgatgctata       300
     attaattata ttaaaggaat gtaattattt atgttcctta ccatctatag ctccaatgca       360
     attgggaaat ccccaaatat cgtagaagtc tgaggcgatt tgtttccatt cgtctgctga       420
     tgtcggaaac ggtaggtatt cttcattgag cacattgtac aaaacaggta ttgtttcctt       480
     taatatcttc gtaattgtcg gtatatatgt gggttttgtt tgacgaaagg gcatacggcc       540
     agtggacaaa tagaacaggg tgactttaag tcgttcctct gaggtaatgc tgtttctgaa       600
     tgggctcttc ttttcctgta taaaaggccg caccttttcc aaaattatat taaactgatc       660
     tggcgagatt cgcaatactc ttccatagag tacggagtct tcatctgcta tttcccttcc       720
     caacttacat tcgaagcctg aaattgatta atatccatga atttatacaa tacaaaaatt       780
     gttttaatgt tttactggcc ttcaaactct cgttgcaaca atcccctttt taatgcctcc       840
     atcttcctcc tgcgctggtt ctgctttcgc agcatgagca atgcagtcaa ataattattt       900
     tgcattaata acaatgctgc acatagtttt cttctttttt ctatttccat tttgcttgtt       960
     attttgtgta ctgtttatat tttgtgcatt cttcttttca tttttctgtg tagaagctac      1020
     cagcactgtt tgtgccaaca acggtgtttg ccaacacgaa cagctgttcg ttcagcccga      1080
     ttttgtggtt caaaagtaaa ttctgtgcaa gcaaaccaaa aaaagttgta aattattgct      1140
     tttctctgcc tcaaactgta caaaatgaac tgtgatgctt tttgcacttc ttcgaatatc      1200
     agaagtcgcg gtcaaagtag aaaaactaag caaaaactgt gcaagtcgcg agtggctgcg      1260
     aagattgaag aagtcgcagt cgtgacggca gtcgtcgtcg atatttgcaa gtgttttccg      1320
     aggctcaata agtaactcaa tctattgaca atggcgccaa aaaaacgcga aaaaactaat      1380
     gtttggattt actacgtaaa taatacagaa agcgggcagg ctacgtgcag aatgtgtaat      1440
     ggcaccttaa aaaacaatag ggtgtcgaat ctaaaaacac atttatggaa tcgtcacaat      1500
     ataaaagttt taaaaataac cccgatcgaa accaaagttg acgagtcatc cgatcaggat      1560
     tccgaaattt ctgaaaaaat aatacgcaag cagaaaacaa cagctgtgca taagaaacaa      1620
     acacttagac aaaaacgtaa tgctctttgg aaatattttg aaaataatat agacagcggt      1680
     caggccaagt gcaaaatatg caaagccccg ctaagaaaca gagtttcaaa tctgaaaggt      1740
     catttattcc aacagcacga tataaactta tattatgcca aaagacaacc catgaaaaaa      1800
     attagagtta atgtgaacaa gctgttactt cgaaacaata aatatgatgt ttggaattac      1860
     tatgaaaata ttatagacag cggtatagcc aggtgcaaga catgcaatgg cacactgaaa      1920
     aacaatagag tttcaaactt aaaaacacac ttattgaaga tgcataatct aaacctatca      1980
     gttaaaaaaa ttcaaccgat cgaatcagcc tcatccgagg cggattcagt gcattctgtc      2040
     aaaataatac ccaaggaaat attaaaaatt aatgtgaata gaaaacagtt acttagatct      2100
     tttattggtc ttgtgaccga agactgcata cccttaaagg tgttggattc accgaacatg      2160
     aggaatatca ttggcccaat ttgcgacggg ctggaagctg cagctggaaa gccaatgagc      2220
     ttaaaggcct caagctgcat taaacatctg caattggttg catctaacat aagacttgac      2280
     atcaaaactg aactgaaaaa caagctgctg tcattcagaa tagacagtgc ctcgcggcta      2340
     tgcagaaata tagtgggaat cagtgcacaa ttcctaagtg aggctcaaat aaaatcccgc      2400
     tttttaggaa tgattgaact tagaaaagag ccacccaaaa atgttgccgt cgaagtgatc      2460
     aatgttttaa aaaggtacga cattaaagta gcccaaatgg tgtcagctac atccgataac      2520
     ggagagccca tagaagaaag cggagacgac tgttccaacg aagagtatct aaaaaaaatc      2580
     gagttggtag aaaaatcacc caacatccta ttaggacatg ttcgagtctc tcgctgtgct      2640
     gcacacagtg cccaactttg tgtccttgat gttacaaaat cctcggaaat aattaattac      2700
     atattcactt gtcgtaattt gacgaaatat atcagaaaac catcgaaccg atatcacgaa      2760
     acttttgagc aaaaacaact aaagatgccc cagctagact gccccaccag atggggctcg      2820
     acctatgcga tgttggaaca tttgaagctt gctaaagacg tgatacccaa aaacgaatcg      2880
     gtgagaagta acattcaaga cggaagctat gtaatagact cgttttggga attcatcgaa      2940
     agctattgcg tcgtattcgg tcccttgcaa aaaacaatac tcaaattcca agaggagcaa      3000
     ctgcactacg gcaattttta tgctcaatgg ttaaaatgca agatatgcac tgaaaaaatc      3060
     gtaaaggatg ccagtcaaac tttgacgaca acaattggaa atataatttt gaactccatc      3120
     gataagcgaa caaacaaatt tatgaatagt aaacgtttag tttcgtgttt gtatttggat      3180
     cctcgattcc atcatacctt gacagcagag caaaaagtgc aagctagaga ttatttaaaa      3240
     caagtttggg atagaatcac ggaagttaat cccgaggtca cttgttcagc atcgatggtt      3300
     tcgactccag atcaatccgt tggctttgac gaagaagatg agttactaaa ccaatacttg      3360
     actcaaggac tacttgaagc gaacgttgga agtaaaagcg atgtgtatac aaagattgag      3420
     actcttcagc ttccatttca cagaattgat gtagacgttc tatcgttttg gcaagcgaaa      3480
     gagaactctg atcaggagct gtatgcaata agcaaggtgt gctttgcaat accgccaact      3540
     caggtaaata gtattcattt ttattataaa tttaaagttt tattaaatat ttttcattca      3600
     tcacaggtgg cgatggagcg acaattttct acgctacgac tgatgcttac tgacgattgg      3660
     aatcaacatg gtcaggaaac actagaaaac atattgttgg tgaaattaaa tccaaatttt      3720
     cttgaatcag ccattgacca gttgccgatt ttccaaaacg accacgatcc ccccccgata      3780
     gaatctataa aagatgaata attttaaatg aacaatttac aaaaaaatta aatattaaaa      3840
     tattaaaaat caactggcac tttttcgctt tgacgacttg cacaccagcc gtgggccgac      3900
     tgacgtcagt tttcgttact caggaaagtg gaagtgctgt gcagctttga ctgcgaattc      3960
     ttatttcgtc tatttatata actacaatat gtagtctata acttcaatat taaatatgaa      4020
     atagtttaag cataaacatc tatttatcta aatttatttc catgcatttt cgctcggatt      4080
     tattttcccg cgacgttttg caacactaac aaccacatac atttgaatta cgaaaaagtg      4140
     tgccaaagtt ttcgcgaatc tagttacaag ttgacacaaa tatgcacata agcataaaac      4200
     gggctgcata tatgcggcca taaatcacgg gccacgtgga tacgcagtgc gtatgctata      4260
     tgcaaatgaa tacggctaca aagtgccggc gataaaacgc tgccgactta tcgccagtgg      4320
     aagcgccgcc aagtcgccgc caacaatttt tggaggtcta ggtgagacta taaattggcc      4380
     gtcgtcccag tccggtccca cagaaaataa gggaacgtgg cgtaatggca aagttggaac      4440
     gaattctcac atctttgttc cttctaggcg tggccggggc cctcccgatg gtggacctgg      4500
     actctgagga cgtgatagac ttgtcggatc tgggggaggc tatattcggt aatccggaca      4560
     gcgagaccac gggcgtcctg gtcgatgccc atgatgagca gtcccaacag aatcccgagg      4620
     agctgggaac ctactacgaa ggcgacatcc tcattcctct aagttatcgc gaggcgcgtt      4680
     ccaacggcac ccgcaacggc atcctcgcgc agagcttccg ctggccggga gccgtcgtgc      4740
     cctacgagat caagggtccc tttacgaccc aagagctggg caacattaac cacgccttca      4800
     aggagtacca caccaggacc tgcgtgcgct tcaagccgcg ctccaccgaa aaggactata      4860
     tatcaattgg aagcggaaag tcgggctgct ggagcagcat tgggcgactg ggcggacgcc      4920
     aggaggtcaa tctgcagtcg cccaactgcc tccggaccta tg                         4962
//
ID   Hovi1       repbase;    DNA;    INV; 2690 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Hovi1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hovi1.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-2690
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           628..2526
FT                 /product="Hovi1_1p"
FT                 /translation="MILPLFYRMETPNDISEKIRNGTYVLLPKRMGRSPVW
FT                 DLFADVRKSDGTILDGYLCCRKCNRLFKYDGKHTSNLNRHRCFYVGVEDHK
FT                 PITMEDKKAALEACAQWIIADCRPYSIIEGAGFHKLAKFLVQIGAKYGENI
FT                 KIDDLLPEAGTISRQLNKTAQMKKVEMKAFLEQRMENRIEASVTMDMWTDM
FT                 YVKRNFLCASLHFQKDNRLQNIALGIKSMDLSRTNDELILSKLKNMLAEFG
FT                 IKHLDKLIFVTESEDQKTKPFRNLTRINCSSELLSNVLELAEDASSELKGI
FT                 IQNCKKLVKYFKNSNSYHNLPSILRSPGTTRWNSNFVMFKFITEHWVKITK
FT                 ILADLNQDPLLGDINISTIQSLLKLYQDFDTILHKLQDASYPSLCFVLPSI
FT                 NKLKVLCAPDPNDIAAIVEFKQNILSNLSTWTSKLSVYHRVANFLYPPAKE
FT                 YIEDKHDGAKEFCRKELLERLSQSSNNIKKEKSDTETQTMDSHTNDIKDDN
FT                 TNSWKSRDLNEENSNTSMQSMDSNNPEDKYTDFKFFFSHLIHTPKLSLEDW
FT                 VNYEIERYSSHIEQYDRYFDVMTWWQQNQTNFPYLSKLAFFILSIPASIAA
FT                 SQGIRNLAGNLIVTGKSNCIAPKAVDSTVFLNLAP"
XX
SQ   Sequence 2690 BP; 911 A; 493 C; 530 G; 756 T; 0 other;
     catgccaaag gcaaggcccg agcgtcgtta ttcctttagc ggtgcaccca gcttgcagac        60
     cacggaggac acgctggccc agttgtgcgg ttcctatgaa attgtcgacg tctatgatca       120
     aaataatagc acatctatgg acctgcccaa gaaatcgata aggaataacg ctgacaaagc       180
     gaaatgtgat caatccgcag atttggatga cgatgttatg gacaagaatc gcaaacgcaa       240
     tcggcacacg gaaaatctgg aggagctctg tagtgcgcaa aatgcattaa tgacgcgcgt       300
     tgccgacagc ttggacgcaa tacgctccaa catggccgag cagacgaatg taatgctgca       360
     gcatttcaaa agaatggagg aaatcgaatt gaaaaagctg gaggcgatca aatgttttaa       420
     gaaatagcat atttttattg tccttagtta gtatgtttct tttaaatatc tataagcttt       480
     taataaatgt gtacatatct atttgcatat attcatgtgg aatagtttta gttttggtta       540
     gattgtagaa tacccttccc tttttaataa gtttatgtat aaactgataa gtatttatat       600
     tttcaataat atttgcttat tataaccatg attttgcctt tgttttacag aatggaaaca       660
     ccaaacgata tttcggagaa aatacgaaat ggaacatacg tgcttctgcc caagcgcatg       720
     ggcagaagtc ctgtttggga tctatttgca gatgtacgta aatccgatgg caccatactg       780
     gatggttatc tgtgttgccg taaatgcaat cgactcttta aatatgatgg caaacataca       840
     tcaaatctga atcggcatag atgcttctat gttggcgtgg aggaccataa gcccataaca       900
     atggaggata agaaagccgc tcttgaggct tgcgctcagt ggataattgc cgattgccgt       960
     ccctatagca ttatagaagg tgccggtttt cataagctgg ccaagtttct cgtacaaatc      1020
     ggtgcgaaat acggtgagaa tataaaaata gatgatttgc tacccgaagc gggaaccata      1080
     tcgcgccagc tgaacaaaac ggcgcaaatg aaaaaagtag agatgaaagc atttttggag      1140
     cagagaatgg agaatagaat tgaggcctcc gtcaccatgg acatgtggac agatatgtat      1200
     gtaaagcgta attttctatg tgctagtctt cactttcaaa aggacaacag gctgcagaac      1260
     atagcactcg gcattaagtc catggacttg agtcgtacaa acgatgaact cattcttagt      1320
     aaattaaaaa atatgttggc cgaattcggc atcaagcatc ttgataaact gatatttgta      1380
     actgagagtg aagaccagaa aacgaaaccc ttccgcaatt tgacacgcat aaattgttct      1440
     agcgaattgc tttcaaatgt tttggagctc gccgaagacg cttcaagcga actgaaggga      1500
     ataattcaaa attgtaaaaa gctggtaaaa tattttaaaa attcgaatag ctatcacaat      1560
     ttaccatcaa tattgagaag tccgggcacg acacgttgga attcaaattt tgttatgttc      1620
     aaatttataa cagagcattg ggtaaaaata acaaaaatac ttgctgattt aaatcaagat      1680
     cctctacttg gtgatattaa tataagcaca attcagtctc tactcaaatt atatcaagat      1740
     ttcgatacaa tattgcataa attacaagac gccagctatc cttccctgtg ctttgtcctg      1800
     ccatcgatta acaaattgaa agtactttgt gcaccagatc cgaatgatat tgcggcaatt      1860
     gttgagttta aacaaaatat tttaagtaac ttgagtacgt ggacctcgaa gttgagtgtc      1920
     tatcaccgag tcgctaattt tttatatcca cccgccaagg aatacataga agacaagcac      1980
     gatggggcaa aagaattctg cagaaaagaa cttttagagc gtctcagcca aagttcaaat      2040
     aatatcaaaa aagaaaagtc ggatacagag actcaaacaa tggactccca tacaaatgat      2100
     attaaagatg ataatacgaa tagctggaaa tcgagagact tgaacgaaga gaattcaaat      2160
     acgtcaatgc aatcaatgga ctccaataac cctgaagata aatatacaga tttcaagttt      2220
     ttcttctctc acctaatcca tacgcccaag ctttcacttg aagattgggt taactatgaa      2280
     attgaacgtt actcaagcca tatagagcaa tatgaccgat attttgatgt tatgacctgg      2340
     tggcagcaaa accaaacgaa ttttccctat ttatcgaagc tggcattttt tatactttca      2400
     atacccgcat ccattgcagc ttcacagggt atacgcaatt tagctggaaa cctaatagta      2460
     actggcaaaa gcaactgcat agcgccgaaa gctgttgaca gcacggtatt tttaaacttg      2520
     gctccttaaa ttaactattt ggccacaaaa tgttaagaaa cttttcaaat ttgataaaag      2580
     aaaatgccaa atggtattcc aagaaatgta taaaaaataa agatttaaca ttcattttgg      2640
     atttatatat atatatctat atatagttta gccagattgc atttggcatg                 2690
//
ID   Hovi2       repbase;    DNA;    INV; 2970 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Hovi2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hovi2.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-2970
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1496..2434
FT                 /product="Hovi2_1p"
FT                 /translation="MEEVFKEVNELKQMLQTCISLLKHCEMSGKLTNTKSL
FT                 PSSTQSNTILCCIKSVEDNWHLVSEILVDKSETPILIADIKAVVHILLSFE
FT                 QSVQAMAEETMPTLHIIIPHLHKLKKLCSNKPEDIAIATILKSALRSHLDS
FT                 IETVHITKYHKIALFLFPPTNKLLLFEESDKRATIEECKRMMQQFYVETDN
FT                 TRKRIKLDMEYCGDGLFTDFLEPMSTDTKLDIINNEINEYLSRKMSLHEMS
FT                 NVLDWWNANRVLFPLLYKVSCKILGTPASIAPSQRALLQARTLLSEQPNGM
FT                 QCAEDMINEIVFLGNNFKYDC"
XX
SQ   Sequence 2970 BP; 949 A; 601 C; 586 G; 834 T; 0 other;
     ggaatcgata cattactcag atttaagtac tcgtatcgca ttaatcggct atcgaccgac        60
     caccacaacc gcgaaacata ccaagcattt acaggtattt acagtttgtg tctaaataaa       120
     agacacttat gttgtgattt attattactt cgagttaaat acatttgcgc tttgcataaa       180
     tgcagttacc ccattttcat cgagcaacaa gcacaacaga aacgcatacc gagtatttca       240
     aagcaccaaa ccatttgcat tgaattttgt gagtattcga atgtctcatt tggtggtgga       300
     aaactctcgg cccactcgtc gccagcattc gtactattct ataaaagagg ccaaacattt       360
     tgaacgaatg caagtgaaat ggatctgcta gagattaaaa gcgaaatgag ctatcaagag       420
     caggtatata tttatttatt ttatcaacac acattcaatt gattatttat ttgatttaca       480
     gaattcggaa tatgaatgca cttcccctct ggacggaact acaagttcca ataattatgg       540
     ccatatttca aatttcagga ggaaaatagt aaacggccaa attaaactta gggaaaaacg       600
     cggtcgaagt aaggtttgga atatttttgc cctaatgatt gatgaaaatg gcgacaaaat       660
     tgaaaatgtt gtggcctgcc gaaactgttt caacgtatac aaatactcgg gctgtacctc       720
     gaatctggtc aagcacaaat gctacatcaa ctccgagcca aaagagaatg gtgtccgcag       780
     ctaccaagat gtggaagtag acagtgaaac cctaggcaga ctaaacgatg cggccgccca       840
     gtggctggtg acaaattgtc gctcctggac catactcgag gactcgggcc tgaagaatat       900
     tgcacgcatc tttgtggcaa tcggtgccaa tttcggtgaa aatgtcaacc tagacgctct       960
     aatgccaagc ccaacaacca tagcatgcaa tatatccgac ctgtacgaat cccagcgcca      1020
     aactattgct gcggagctgc acaaggctaa aggcagcgga tacagcataa cagtgactat      1080
     ctggaaggac agctacctca aaaaacctta tgcagccgta accgtgcact atatccagaa      1140
     atctgctatg atcagtcgct tgctcgccgt gtccccattg aacagggatt caaggacaag      1200
     taatgccaga aactccttaa ataatctacc cagaaaagtt acccaaacca gtttccgcaa      1260
     gactaaacta tctaaaatcc tttaaggaga atccttttat ctgaatacgt tttaatattt      1320
     ctctgccttt gcaggtaacc agatcagaga acacattaaa aactgcctgc gtgcatttga      1380
     aagcgacttg gacgtggagg atccaataat tgttacggac tgcgaagaag ccgctacgcc      1440
     tgcctcggat tgtcagcatc atgtgcactg catccgcagt ttgttaaaca atgtcatgga      1500
     ggaggttttc aaggaggtta acgagttgaa gcaaatgcta caaacatgca ttagcttgtt      1560
     gaagcactgc gaaatgtccg gcaaattaac taatacgaaa tcattgccca gttctacaca      1620
     aagtaataca attttgtgct gcatcaagtc tgtggaggac aactggcatt tggtgtccga      1680
     aattttggtt gataagtcag aaacgccgat cctcatcgct gatattaaag ctgttgtcca      1740
     tattttactc agctttgaac aatctgttca ggccatggca gaagagacca tgcccacgct      1800
     gcacatcata atcccccatc tgcataagct gaaaaagctc tgttccaata agcccgaaga      1860
     cattgccata gccacgattt tgaagagtgc attgaggagc cacttggatt caattgaaac      1920
     agttcacata acgaaatatc ataaaatagc cctctttctt tttccgccca caaataaact      1980
     gcttctattt gaggaatccg ataaaagggc cacaattgaa gaatgcaagc gcatgatgca      2040
     gcagttttat gttgaaaccg ataatacgcg aaaaagaatc aaattagata tggaatactg      2100
     tggagatggc ctttttacgg actttctgga gcccatgtcc actgatacga agcttgatat      2160
     tataaataat gaaataaacg agtatctgag cagaaagatg tcgctccacg aaatgtcgaa      2220
     tgtcttggat tggtggaatg caaatagagt tctgtttccc ctgctctaca aagtcagctg      2280
     caaaatactg ggtacacctg ccagcattgc cccttcccag cgggctcttc tgcaagctcg      2340
     aactctgctc agcgagcagc cgaatggaat gcaatgtgcc gaagacatga taaacgaaat      2400
     agtattttta ggcaataatt ttaagtatga ttgttaaatt cagatattgt gatttcctta      2460
     gcattaacac atttcatagt tcctataatg aactatagca atttcaaatt tttaaagtaa      2520
     aatcaaatgg ttgtgcctac tctttgtttg cagaggccat tatagttcta tgacatttcc      2580
     gtcacaatag agtgcatata ttttattata agtattaaca gcccagtcga ttttggatca      2640
     gaaagctctt caaagatctt tatgaaattt atttgagagt gttgttgagt gaagaaataa      2700
     ggtcaatggt tgtattttaa aaattggcag aaaacgattg tatataggtt tattttatta      2760
     aatttcacaa ctgcttcaca caatattaaa gtttctgagt gatataactt aactaagtgt      2820
     ttaaatagtt tttgaattaa atgtgaggcc cggcaattta atggtgctgc caccttatag      2880
     aaaaagtggc cagatgggta ctttgcttca atgtttaatt cttatcgata ctatcggtat      2940
     tctcttcaaa atatcaggcg tataaatgta                                       2970
//
ID   Howilli1    repbase;    DNA;    INV; 2816 BP.
XX
AC   .
XX
DT   07-OCT-2009 (Rel. 14.10, Created)
DT   08-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Howilli1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Howilli1.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2816
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           394..2154
FT                 /product="Howilli1_1p"
FT                 /translation="MSLIRKHSEIWTHFEDIGNQQAKCNYCKCLLSWKSQS
FT                 NLSRHLKCKHPAAMEPVVRQNEESSVVVQSAQPRITTFIHRPVPVSKSQQI
FT                 DRQLVKMIAKGHHALRIVEETEFQKLIHDVSQTPGYKLPTRKTLTNALIPK
FT                 IKDECTGKIMKMLSASTAVCLTTDGWTSVTNESYLAVTVHFIETEFTVLTS
FT                 YTLACQGFEESHTSTNLCGFLQNIVSEWGLENKVAAIASDNAHNIAGAIRI
FT                 GNWKHVRCFAHCLNLIVQKALVKMSRVRTKAKAISQYFNRSTSGLKKLREM
FT                 QALFKLPELKITQDVPTRWNSTYKMFQRLTVLKEAIVAALSTRTDLILSPE
FT                 DWDLIDGVLPILQPFFQITEEISAENNVTLSKIIVLVGILQKKMVSISSNI
FT                 KNPTLNELITEIIVDMDERFRDYEGNFLYAESTILDPRFKGRVFKSVEAFK
FT                 KSVADIKTNLLRSVASSSENISPNNESLNFKTQDKDDIWTDYDTNFKQVSQ
FT                 PTNNTAAAIREMDKYLAEEYINRKDDPLVWWNHRKSQYPLLYAYMLKRLCK
FT                 VATSVPCERIFSSAGETVRKRRSLLKPKNVENLMLLHNNM"
XX
SQ   Sequence 2816 BP; 921 A; 516 C; 542 G; 837 T; 0 other;
     tagtgttggg ttgctcatga gtgagtgaac aaaaaagagt tgttcagtga agtgagcaac        60
     tgaacatgtt ctcttccaat tgttcttttt tgttcacttg ttcttttttg ttcacttgtt       120
     cttttttgtt cacttgttct tttttgctca cttgttcttt ttggttcact tgttcttttt       180
     ggttcactag atctttttgg ttcactagat ctttttggtt cacttgttct ttttggttca       240
     ctagatcttt ttggttcact agatcttttt ggttcacttg ttctttttgg ttcactagat       300
     ctttttggtt cacttgctcg atctacgttt cttttgtctc aagttctttt ttcatattag       360
     cgatcatatc agtttcactt ttaaaaattc agaatgtcgc taataagaaa acatagcgaa       420
     atttggactc attttgagga cattggcaat cagcaggcga aatgcaatta ttgcaaatgc       480
     cttctgagtt ggaagtccca aagcaattta agccgacatt taaaatgtaa acacccggca       540
     gctatggagc ccgttgtccg ccaaaatgag gaaagctcgg ttgttgtgca aagcgcccaa       600
     ccaaggatta cgacatttat tcacaggcct gtcccagtga gcaaatctca gcagattgat       660
     cgacaattgg tcaaaatgat tgccaagggt catcatgctt tgcggatagt ggaggaaacc       720
     gagttccaaa aattaattca cgacgtatca caaactccag gctataagtt gcccacaagg       780
     aagacattga cgaatgcatt gattccaaaa attaaagatg aatgcaccgg aaaaattatg       840
     aagatgctca gtgcgtctac agcggtctgc ttaactaccg acggttggac atccgttacc       900
     aacgagagct atttagcagt cactgtgcac tttatagaga cggagtttac agtgctaaca       960
     tcatacacgt tagcttgcca gggatttgaa gaatctcaca cctccacaaa tctgtgcgga      1020
     tttcttcaaa atattgtttc agaatgggga ctcgaaaaca aagttgcggc aatagcttca      1080
     gacaacgcac acaatattgc tggtgctatt cggataggca actggaaaca tgtccgttgt      1140
     ttcgcccatt gtctcaattt gatcgttcaa aaggctttgg tgaagatgtc cagagtgcga      1200
     actaaagcta aagctatatc acaatatttt aatcgcagca catccggatt aaaaaagtta      1260
     agggagatgc aagctctgtt taagttgccc gaacttaaga taacgcaaga tgttcccact      1320
     cggtggaact ccacttataa aatgttccaa agactgacag tgttaaagga agcgattgtg      1380
     gcagccctgt ctactcggac agatttaata ttgtcacctg aggattggga cctaattgat      1440
     ggagttcttc ccatactgca gccgtttttc caaataacgg aagagatttc agcagaaaat      1500
     aatgtgactc tttccaaaat aatcgttctg gttggcatac tgcaaaaaaa aatggtcagc      1560
     ataagttcaa acattaaaaa tcctacttta aatgaattaa taactgaaat tatcgtggac      1620
     atggacgaac gcttcagaga ctatgaggga aactttttgt atgcggagag caccatactg      1680
     gatccaagat tcaagggacg ggtttttaaa tctgtggagg cctttaaaaa gtccgttgcg      1740
     gacattaaaa caaatttatt gcgatcagtg gctagctcgt cagaaaatat ctcaccgaac      1800
     aacgaaagtc taaatttcaa aacgcaagac aaggacgaca tatggactga ttatgacaca      1860
     aattttaaac aagtcagcca gcccaccaac aacacggcag cagcaattcg tgagatggac      1920
     aaatatctgg ccgaggaata cataaataga aaggatgatc cattggtatg gtggaatcat      1980
     cgaaaatcgc agtatcctct tctatacgca tatatgctaa agcggctctg caaagttgcc      2040
     acatctgtgc catgcgagcg catattttca agcgcaggcg aaacggtgcg caaaagacgt      2100
     tcgcttttga aaccaaaaaa tgttgaaaat ctaatgcttt tgcataataa catgtaaatt      2160
     tcaagtaagg atatcataat ttttgaagtt ttcccaaata agaccctttt ttcttttagc      2220
     aatgcaagca gctatattaa catctaataa tcataagaat caaagcattc caactgaatg      2280
     gaattataaa acatgttacc ttaagttttt gttttgaaat tgttttaatg ttgttttgaa      2340
     atataaatat gttatttagc atgaaatgtg atatatttta tttcagcagg ggtcgaaaaa      2400
     aaatatataa aactgtactt caaatatatc ggtaactgca ggacgttact tttatttata      2460
     aaaaggacat ctagttgaaa aaaaaagaca ttttttttat tgttaaataa aaatcataaa      2520
     gtatcactaa taatattacc aaaatcgaca acaatgctta agatgtaatt ttcaaaataa      2580
     aactcagaat gtttatgctg agcaactgaa caactgagca atgtagagaa caactgaaca      2640
     actgagcaat gtagagaaca actgaacaaa tgagcaatgt agagaacaac tgagcaactg      2700
     tagtgaacaa ctgagcaatg aagtgagcaa gtgaacaaaa tgagcgagtt gactcacttc      2760
     gaaaaaaaga acaagtgaac atgttcacca aaatgagcaa tctttaccca acacta          2816
//
ID   Howilli2    repbase;    DNA;    INV; 2847 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Howilli2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Howilli2.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2847
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           537..2234
FT                 /product="Howilli2_1p"
FT                 /translation="MKAFSKVGFFATNGKVLKFVSNQTSNLSRHKCCLSLR
FT                 QPAETKKVSNMDKTTATKKCLEWVVQDCRPFSAVNGTGFRSLVEFFVTVGA
FT                 TYGANVDIDDLLPDATTLSRNAENDAEEKRAIVSNDIKEAVENNAVSATID
FT                 MWTDQYVNRNFLGVTLHYLKEFKLNDIILGLKSMDFQKSTGENILKKLQSI
FT                 FAQFNVDNITNIKFVTDRGTNVKKALENNIRLNCSSHLFSNVLEKSFDEAR
FT                 ELKDILYACKKIVKYFKKASLQHRLTTTLKNSCPTRWNSNYNMVSSIVKNW
FT                 TTVNNILSETEGGQKLIAVNISTLKIILVLLEDFERIFKELQTCSSPSLCY
FT                 VLPSIAKIKILCEPNTEDISLISVLKARILVNLNTIWKENLGIWHKAAFFL
FT                 YPPAANMEHEDSLEIKTFCIDQMNNYVSFPNEPSQNNSFTSESNPASPNCQ
FT                 LEVIPKKVTFVPKTTFFFSQLVAQSNNNLKSPLEELDNYCSERVSLTEDFE
FT                 PIEWWKTKENCYPLLSKLALQLLAIPSSSAAAERVFSLAGNIITEKRNRLG
FT                 PKTVDNLLFLHSFFKNNNS"
XX
SQ   Sequence 2847 BP; 961 A; 497 C; 513 G; 876 T; 0 other;
     cagagaactg caagtgtgtc aatttttgcc accttactca cactcaatga aatttgtgtg        60
     ccggtgccac tcatcaccgg ctcagcaaat catgaacaca cacttataca aaattatgtg       120
     agtgccacat ctaccacata taccatctgt cgctcacaac aatacaccgt tttctttttg       180
     catggcaacc aagtgttttt cggcaacgcg tgccggttgc actcacactt aaagcgaacg       240
     tagagaaaaa aacaaaagtg tgaaaaagac aacatgcaat aacgcaagtg gtcaaaatac       300
     atgtatatca cccaagtgtt ttataggcac catggtgtgt gtgttgaatt gtgtgctaat       360
     tgcttctgaa ctgaatcagt tcttagcttt gattagtgcg tgtttgattt tgccatcgaa       420
     aacaatgaga gcagaagacg tgaaaaattt aataaatcgt ggcatttata aagtagcccc       480
     aaaacacaaa ggcaagagcg taatttggtc aatattgtgt gacatatata aagaagatga       540
     aagcgttctc gaaggttggg ttttttgcaa caaatggaaa agtcttgaaa tttgtttcca       600
     accagacatc aaatttgtcg cggcacaaat gttgtctatc attacgacag ccagctgaaa       660
     caaaaaaagt ttctaacatg gacaaaacca cagcaacaaa gaagtgtctt gagtgggtgg       720
     ttcaggattg tcggcctttt tccgcagtaa acgggactgg ttttcgcagc cttgtggaat       780
     tttttgtgac agtcggtgct acttatggag cgaacgttga cattgacgac ctactgccgg       840
     atgcaacaac attgagtcgg aatgcggaaa atgatgcaga agagaagcgg gcgatagtat       900
     ctaatgatat taaagaagct gtggaaaata atgcagtatc ggctaccatt gacatgtgga       960
     ctgaccaata cgtaaacaga aattttttag gtgtcactct gcattattta aaagaattta      1020
     aattgaatga catcattttg ggcctaaaat cgatggactt tcaaaaatcg acaggggaaa      1080
     atattttaaa aaaattgcaa tccatttttg cacaatttaa tgtcgacaac ataacaaaca      1140
     taaaatttgt gactgatagg ggcaccaatg taaaaaaagc cctggaaaac aatattagat      1200
     taaattgtag cagtcattta ttttcaaatg tgttagaaaa atcgtttgac gaagcaagag      1260
     agcttaagga catattgtac gcctgcaaaa aaattgttaa atattttaaa aaagctagtt      1320
     tgcagcacag attaactaca acgttaaaga actcatgtcc tactcgatgg aactccaatt      1380
     acaacatggt ttcttcgata gtgaaaaact ggacaacagt aaacaatata ttaagtgaga      1440
     cagagggagg tcaaaaactt atagctgtaa atatatctac gttaaaaata atactagtac      1500
     ttttagaaga ttttgagaga atctttaaag aattacaaac atgtagctct ccttcattgt      1560
     gctatgtttt gccctcaata gcgaaaataa agattctttg cgagccaaat actgaagata      1620
     tctcgttaat atctgttctc aaagcaagaa ttttagttaa tcttaacacg atttggaagg      1680
     aaaatttagg catttggcac aaggcggctt ttttcttata tcctccagca gcaaacatgg      1740
     aacatgagga ttcattagaa attaaaacct tctgcattga tcaaatgaac aattatgttt      1800
     cttttccaaa tgaaccttcg caaaataatt catttacatc agaatcaaac ccagcaagtc      1860
     caaattgtca acttgaagta attcctaaaa aggttacgtt tgtgccaaaa accacttttt      1920
     ttttctccca actggttgca cagtcgaata acaatttgaa atcgccccta gaggaattag      1980
     ataattattg tagtgaaaga gtttctttaa ctgaggattt cgaacccatt gagtggtgga      2040
     aaaccaaaga aaattgttat ccattactat ccaagttagc attgcaactt cttgcaatac      2100
     catccagtag tgctgcagct gaaagagtat tttctttagc gggaaacatt ataacagaaa      2160
     aaagaaatag attgggtccg aaaacggtag acaatttgct ctttttgcac tcttttttta      2220
     aaaataataa ttcgtaattt aattcctatt ataacttcat tgaaggaaaa aatttttttt      2280
     ttatttgctt tgaagcgata taatgtttat atttccctta tgttaatttt gttaattata      2340
     ttaaatgaat gcactgaagc aagttaatct ttatgtaata tattaaatga ataaaataag      2400
     ttatttttga gtttttgtta attatattaa atgaatgcac tgaagcaagt taatctttat      2460
     gtaatatatt aaatgaataa aataagttat ttttgagttt aatattttct tttattgttt      2520
     actattttcc tgttgtacgc actaatgcag ctacttgcac aaaagacacc gcaacatcgg      2580
     cgacactcta cacattctat gactcaattt ttgtgtatgt cttttcaccc atcttttttt      2640
     tcgaggctca agcgccggca catgctgtac acacacatgc gaaaaaatac ctactcactt      2700
     ttgcagcttg tgtgcacaaa cactcaagta ttttcgtgag gcgagcattg tacacatttg      2760
     tgcggtggtt gaaaacaccc gggtgtcaaa atcacccaac atttacccgg tccaccttga      2820
     gtaccggtgg cttgttgcag ttctctg                                          2847
//
ID   Howilli3    repbase;    DNA;    INV; 2559 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Howilli3 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Howilli3.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2559
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           51..1550
FT                 /product="Howilli3_1p"
FT                 /translation="MFSDVFRCFVTYRCLSMHRCLTEHRVLNFTTLQNICF
FT                 SATRKNSRICLIYLPCVCNAKVSKLWKIYINIVICNYKCIYSRITTRTSFC
FT                 WRHFTKIDGNSAKCNICDKVLKTAGNTTNMKDHLRSLHKIDQNVEVPAVPN
FT                 ISGVAQISIAESFQNMAEYGTDGNKTKIINDAIIYMISKDVQPFSIVENKG
FT                 FIHLMNTVAPRYKIPSRYLITKWVDEKFLEMKEMWKRLLNGKTLTLTMDVW
FT                 SDQMSMRSYLGITAHFQLELEMTSLTIGVLELSERHTSVYLTEMLERCCKD
FT                 WHIEKELVTAIVTDNGANVVKAVDLGFGRKKHVPCFAHTLNLIARSAMQRD
FT                 SISACIEKVKGIVTFFKQSCVASDNLRKVTDKVLIQDVVTRWNSTYYMIER
FT                 YLELKNFVNDIVLSVRNDVEMLNGNELQLLNNIMPMLRPLEEATKIIGADT
FT                 YCTASMVIPMVNILKTKLLNVDDITPEANDIKNFLLFEIDKRMGSIEQVCF
FT                 KCHH"
XX
SQ   Sequence 2559 BP; 886 A; 417 C; 494 G; 762 T; 0 other;
     tagtgatgta aaaaaacatc gatgcattga acatcgatga tttttgggca atgttttccg        60
     atgtttttcg atgttttgtg acataccgat gtttatcgat gcatcgatgt ttgacagaac       120
     atcgggtgtt aaatttcaca acattgcaga acatatgttt cagtgccaca cggaaaaatt       180
     cgcgaatttg tttaatttat ttaccctgtg tttgcaatgc caaagtaagt aaattgtgga       240
     aaatatatat aaatatagtt atttgcaatt acaaatgtat ttattctaga ataacaacaa       300
     ggacaagctt ttgttggagg cactttacaa aaattgatgg aaatagcgca aaatgcaaca       360
     tttgcgacaa agttttgaag actgcgggta acacgaccaa catgaaggac cacctgcggt       420
     cccttcataa aatagatcaa aatgttgaag tgcctgcagt acctaatatt agtggtgtgg       480
     cacaaatttc tattgctgaa agctttcaga atatggcgga atatggcacc gacgggaata       540
     aaacaaaaat aatcaacgat gccattattt atatgatatc aaaagatgtc caaccatttt       600
     cgatagtcga aaacaaaggc ttcatacatt taatgaatac ggttgcaccg cgttacaaga       660
     taccgtcgcg atatttaatt acaaaatggg tggatgagaa gtttttggaa atgaaggaaa       720
     tgtggaagag attgctaaat gggaaaacgc taacattaac aatggatgta tggagcgacc       780
     agatgtcaat gcggagttac ttgggcatta ctgctcattt tcagcttgag cttgaaatga       840
     cttctttgac tatcggagtt ttggagctaa gcgagcgtca cacatcagta tacctcactg       900
     aaatgctgga gcgttgctgc aaagattggc acattgaaaa ggaattagtg acagccatcg       960
     ttaccgacaa tggggcaaat gtcgtcaaag ccgttgacct aggttttggg cgaaaaaagc      1020
     acgtaccatg ttttgcacat accctaaatc taattgcaag atctgctatg caaagagatt      1080
     caataagtgc atgcattgaa aaggtaaaag gaattgtaac tttttttaag cagagttgcg      1140
     ttgccagcga caacttaaga aaagtaacgg acaaggtatt gatccaagat gtggttacta      1200
     gatggaacag cacatactac atgattgagc gttacttgga gcttaaaaat ttcgtaaacg      1260
     atattgtctt aagtgtccgc aacgatgttg agatgctaaa tggaaatgaa ttacagttgc      1320
     ttaataatat catgccaatg ctgcgccctc ttgaggaagc cacaaaaata ataggcgcag      1380
     atacgtattg cacagccagt atggttatcc caatggtgaa tatcttaaaa acaaaattgc      1440
     ttaacgttga tgacatcacg cccgaggcaa atgacattaa gaacttcttg cttttcgaaa      1500
     tcgataagcg tatgggttca atagagcagg tatgcttcaa atgtcatcat taatttattc      1560
     cttaaaaaat tttattttaa atgtattgtt tcaggtctca attctggcaa tggctacagt      1620
     acttgatcca agatttaaga aactgcattt taaagaccct caggcatgct caaactctat      1680
     tacaaaaatt aagtctatga taaaaccgat ggtccaagac tacaatagta atgataacgt      1740
     gacaagcaca actaaatgca attctttttg ggaccaccat caccagctgg cacagtctca      1800
     tgagcctgat ggggatattg atgtggagat gatagcgtac ctgcgaatgc cattagcgtc      1860
     atttgaaagc aaccctctac aagtttggga aggtatgaga aacacatatc ccaatttaca      1920
     taaaatggct ctgcaatttt taccggtagt tggatcgtcg gttccttctg aacgggtttt      1980
     ttcagcggca tcatatattt taagccaaag gagaaacagg ttagagccaa accgactaag      2040
     ccgcatttta tttttgcaaa gtatcgacaa aaaatacttt tttggaaaaa agtaattaca      2100
     ataattaata ttgtttggaa tcataaaaaa ggactgctaa ggaagctttt attgttatat      2160
     tattatttta ttcattttga ttctcaatgt aatgaaaaag actgctaaga aagtatagtt      2220
     atattattat atttgattct caatgtaatg aaaaagactg ctaagaaagc atttgttata      2280
     ttattattta atcacaagac tacgtaaaat tcgtgaattg atatagtttt aagttctatt      2340
     aattatattg ttaagtaaac cactcaataa agaaataaaa aaaaaacgta gcatttattt      2400
     aaaaggcttt taggaattga attaacgaaa aataacggaa ttggtagaaa cattgataca      2460
     tcgatgttta tagccgatgt ttcacacaac atcgatttat cattttgcaa acatcgatga      2520
     acatcgacat cgaaatttcg acccaaattt acatcacta                             2559
//
ID   Howilli4    repbase;    DNA;    INV; 2631 BP.
XX
AC   .
XX
DT   08-OCT-2009 (Rel. 14.10, Created)
DT   09-OCT-2009 (Rel. 14.10, Last updated, Version 1)
XX
DE   Howilli4 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Howilli4.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2631
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (0001)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1309..2304
FT                 /product="Howilli4_1p"
FT                 /translation="MIRAFEDFEKIHCVNHLLNNAVEKAIAAVPEMGHIVS
FT                 TCTKIVKYFIKSGMNTSLGFSLKSFCPTRWNTVYYLLKSVETNWIEVTTIL
FT                 KDRNQTGRIEGININHLGSIVRVLEAFEQTSKKLEASNSPTIHLILPNINK
FT                 LKKTCQSDCSDIHLIQSLKSALHIQIFSTVVPNLSKYHYLALFLFPPANKL
FT                 IKFSSTEKETVIKDCKTIMQNFVQGSNSSTTETPVTMDEFADFVEVQQVEI
FT                 ADQVKHEITSYANINVSYTLDFDPLAWWNLHANCFPLLYKTSCKIFCIPAS
FT                 SAASERTFSNARNLISEKRCLIAGNSENINKIMFLHSNIK"
XX
SQ   Sequence 2631 BP; 865 A; 452 C; 472 G; 842 T; 0 other;
     tagagagctg ctcggattca ctcaatacat ataaaaatat gaatggactc gaattgaatt        60
     gaattgagtg agtgcttgct aacactggag tgaatgtgtg tgagtgtgaa tgtatattgc       120
     ttcttataac tcacagcatc catcgaaaaa agttcgaatg aatgaagtat aaagccgaat       180
     gaaaaatttg gctaacacaa ttcgaattcg aattcattcg agttatagct tacaaatttt       240
     gtacagtcat tccgtttgtg tcgctgaaaa gaaatggaag tggaaacaga aaccccaggc       300
     aactctgtat gtaattttca gtgttttttg tcttttgttt tgtgttgatt attgtattgt       360
     agtaatatgg ttaataaatt attttctttg tgcttagata ttatctgtaa ctgtgacctg       420
     tccataaatg ttacctatat aatttttttc agatttaatt tagttttatt gaaatatata       480
     ggttgtgaaa agcgcagaga aaaatgcaga tgaaataaag aagaagattg atagtggcat       540
     gtataagcta attgagaaga aggggcgcag cgaagtgtgg aaattttttt ccaaaataat       600
     taatgctgat ggagaggagc tggctgagtt actagcctgt aatatgtgtt tttcggtgtt       660
     taagtttaca ggaagcacgt ctaacatggt aaaacacagg tgttatttgg ttaactccag       720
     caaatcgatg aaaactatgc ctgtggacgt taatgcagca acgaaaaagg aaggcatact       780
     tattatgact gaatgggttg taaagaactg tcgtccttta aaaattgtag atgactccgg       840
     ctttaaaaag gtggcgcagt ttttaattaa cgttgggtcg tcctttggat ccaacgtaga       900
     cttggaaaaa ttgttaccgc atccaaccac tgtttcccga aacatagcag ctatctacga       960
     ggcacatttt ggcccaataa acggtgaaat cgaaaaatat aaggcctccg gatacgctct      1020
     cacaagtgac atatggaccg acaattactt aaaagtatcg tatttgtcat gcactatcca      1080
     ttacataaaa gatggaatcc ttgttgatcg actcatggct atgaagtcaa tgaagatgtc      1140
     ctgtacaggt atatatctca tgaccataag ttgtatagtt gaattcaaat gaattttttt      1200
     taattattag gtttaaaaat tcggtctaaa attcaagaga tactgcaaaa cttcggatgt      1260
     gatctagaaa tcgacaatcc agttatagta accgatcgtg ggtcaaacat gataagagcc      1320
     tttgaagact ttgagaaaat acattgtgta aaccatcttc tcaacaacgc tgtggaaaag      1380
     gctattgctg ctgttcctga gatgggtcac atcgtttcta cttgtaccaa gattgtgaaa      1440
     tatttcataa agtctggaat gaacacctcg ttaggatttt ccttaaaaag tttttgccca      1500
     actcgttgga atacagtgta ttacctttta aagtcagttg aaactaattg gattgaggta      1560
     acaacgattt taaaagacag aaatcagaca ggtagaattg aaggcatcaa catcaaccat      1620
     ttaggttcca tagtccgagt gctggaagct tttgaacaaa cttcaaaaaa actggaagca      1680
     agtaatagtc caaccattca cctcattctc ccaaatatta acaaattgaa gaaaacttgt      1740
     cagtccgatt gttccgatat tcacctcatt cagtcactga aatctgcttt acacattcaa      1800
     atattttcca cagtagttcc gaatttatct aagtaccatt acctagcctt gtttcttttt      1860
     ccacccgcaa acaaactaat taaattttca tccactgaaa aagagactgt aattaaagac      1920
     tgcaaaacta ttatgcaaaa ttttgttcaa ggcagtaatt ccagcacaac tgaaacacct      1980
     gtaactatgg acgaatttgc tgatttcgta gaagtccaac aagttgaaat cgcagaccaa      2040
     gttaaacacg aaataacctc atatgcaaat ataaatgttt catatacgct agattttgac      2100
     ccattggctt ggtggaattt gcatgcaaat tgttttcctc tgctttataa gacaagttgc      2160
     aaaatattct gtattccagc gagcagcgca gcttcggaac gaacattttc caacgctaga      2220
     aatttgattt cagaaaagcg ttgtcttatt gctggtaact cagaaaatat aaataaaatt      2280
     atgttcttgc attccaatat aaaatagaaa taaatgtaat aaaatatatg caaaaaaaaa      2340
     taagagttta catttcattg gtttttgtct ctttctctct ttcttttcta ttatacaaat      2400
     aaatgaaatg aaaaactact tggcaactcg aatccatttg aaaccaactc atttttcttt      2460
     acctgtcaca attcattcaa ttctcttttg tgttttagct ttgtgtgtat gagtcctgtg      2520
     ctagagcact cactcactca tactttttcg gcctcgcact cgaactcact caactcattt      2580
     tgagcattgt caattcgaat aaggtttttt gactactcat gcagctctct a               2631
//
ID   Howilli5    repbase;    DNA;    INV; 2648 BP.
XX
AC   .
XX
DT   18-OCT-2009 (Rel. 14.10, Created)
DT   30-DEC-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Howilli5 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Howilli5.
XX
NM   Howilli5.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2648
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
RN   [2]
RP   1-2648
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-DEC-2021).
XX
DR   [1] (Consensus)
XX
CC   [2]: ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(285..317,479..1160,1217..2313)
FT                 /product="Howilli5_1p"
FT                 /translation="MEGGKTTQSEKVVKRAASTREILAQEIKENLHSGLYS
FT                 LIEKRGRSEVWQFFSRIKNENGDELVELVACKMCLSVLKFTGSTSNLTKHK
FT                 CYIVNASKTQKSSPVDVSSETKQEGVAVATEWVVKNCRPLKIIADSGLNKF
FT                 ASFLINVGATYGPNVDVDKLLPHPTTVSRNIAAIFDSHFVPIKEEIVKYKV
FT                 FGYAITSDIWTDNFLKDSYLSCTVHYVKEGVLVDRLMAMKSMKGMSCTGAN
FT                 IRAKIGDILKNFECDLELDNPVIVTDRGSNMVKAFHDLQKIHCVNHLLNNA
FT                 VEKGINAVPELGYMVSTCTKLVKFFKKSGKNSSLGFTLKSFCPTRWNTVYY
FT                 LLKSVEINWIELTTILKDKNQTNRIEGINVNHLGSVVQILKEFETVSKKLE
FT                 ATKSPTTHLIIPNLNKLKKICLSDSNDIVIIQALKSALYTQILSTIEPNLS
FT                 KYHKIALFLFPPTNKLLQFSPHEKETVIDECKLIMERFLKNSGSNTLQIPI
FT                 ANDEFADFVEVQQVDPNNNQIDQEIKGYSNINVPYSTNFDALAWWDMHQKF
FT                 FPLLHKASCNIFCIPASSAASERTFSNARNLITEKRCLIAANADNINKIMF
FT                 LNSNLN"
XX
SQ   Sequence 2648 BP; 920 A; 449 C; 474 G; 805 T; 0 other;
     tagacagctg catgacttca ttcacttaat aagtaaaata gagtatactc ggatagaatt        60
     gaatagagtg agtgacagac gcacaatgag tgagtgtgta tgagtattag tatattttgg       120
     tactcataca aagcaaattg aatgacactg agtactgact gagtactcag taaaacggag       180
     tgtcaaattt gacacatcta aaaacattcg agttatccaa gtatcagggt acatattttg       240
     tgtatttatt ttctttgcat cgttgaaaca cagcagtcgc aaaaatggaa ggaggaaaaa       300
     ctacccaaag tgagaaagta tgtaatttaa agcgtatttt gttgtttttg ttttcgtttg       360
     ttttgttatt gctgtagtca aatattgcat atatctttct gcttagcttg tgacctgtcc       420
     ataaatgttt tttgtgtaat ttctttcaga tttaatttag ttcaattaaa atatacaggt       480
     tgttaaaaga gcggcgagca caagagagat ccttgcacag gaaataaagg agaatctgca       540
     ttctggattg tatagcttaa tagaaaagag gggtcgaagc gaagtgtggc aatttttctc       600
     aagaataaaa aatgaaaatg gagatgagct agttgaactt gtagcctgca agatgtgttt       660
     gtcagtcttg aaattcacag gtagcacttc aaatttaacg aagcataaat gctacatagt       720
     caatgccagc aaaactcaaa aatcttcccc ggttgatgtg agttcagaaa ctaaacagga       780
     aggcgtagct gttgccactg aatgggttgt caagaactgc cgcccattaa aaattatagc       840
     agattccgga ctaaacaaat ttgcatcatt tttaattaat gttggtgcaa cttatggtcc       900
     aaatgtagac gtggataaat tgttaccaca tccaacaaca gtttcccgga acatagcagc       960
     gatatttgac tcgcactttg ttccaataaa agaggaaatt gttaaataca aagtttttgg      1020
     atacgcaatc actagcgata tatggacaga taacttttta aaagattcat atttatcgtg      1080
     cactgtgcat tatgtaaagg aaggagtact tgttgataga ctcatggcca tgaaatcaat      1140
     gaaaggaatg tcctgcacag gtgtgttaac ttaatgaacg agtgtacatg attttaataa      1200
     atttttctat aactaggtgc aaatattcgg gcaaaaatag gcgatatctt aaaaaacttt      1260
     gaatgtgatc ttgaattgga caaccccgta atcgttactg accgtgggtc aaatatggta      1320
     aaagccttcc acgatttgca aaaaattcat tgcgtcaacc atctcctcaa caatgctgtt      1380
     gaaaaaggta ttaatgccgt acctgagctg ggctatatgg tcagtacgtg caccaagctg      1440
     gtgaaatttt ttaaaaaatc gggaaagaat tcatctttgg gatttacgct gaaaagtttt      1500
     tgccccactc gttggaacac agtttactac ctgcttaaat cagttgaaat taattggata      1560
     gaactgacaa caatattaaa agataagaac cagaccaata gaatcgaagg tattaacgtc      1620
     aaccacttag gttccgttgt tcaaattcta aaagagttcg aaaccgtctc aaaaaaattg      1680
     gaggcaacca aaagtccaac aacacattta attattccaa atttaaacaa attaaagaaa      1740
     atctgtctgt ccgattccaa tgatattgta attattcaag ctctaaagtc cgcattgtat      1800
     actcaaattt tatcgacaat tgaaccaaat ttatcaaaat atcacaaaat agccctattt      1860
     ctatttccac ccacaaacaa attgttacaa ttttctccgc atgaaaagga aaccgtaatt      1920
     gacgagtgca aactaattat ggaacgtttt ttaaaaaaca gtgggtctaa cactttacaa      1980
     ataccaatag caaatgacga atttgctgat tttgtagagg ttcaacaagt tgacccgaat      2040
     aataaccaaa ttgaccaaga aataaaaggg tactccaata taaatgtacc gtacagcaca      2100
     aatttcgatg cactggcttg gtgggacatg caccaaaaat tttttccttt attgcacaaa      2160
     gcaagttgca atattttttg tataccggca agcagcgcgg cgtctgaaag aaccttttca      2220
     aacgcaagaa atttaattac tgaaaaacgc tgcttaattg ctgcaaatgc agataatatt      2280
     aataaaataa tgttcttgaa ctcaaacttg aattaaatgt agtatatatg taaataagta      2340
     tatgaaatga atattaaaat gtaatctatc tatgtatttg ctttcgtttt tatgggtttt      2400
     gaagtacaga ttctgtacgc acaacaaaaa aacaacaaaa atgctgtgtc ggcacctgtc      2460
     attcggatac attcgaaaca tacttactta tactcactta tactctctgt tttaacattg      2520
     tgcggccgag tataaagcaa gcctatccac tcactcatac ttattccgtt tcgcactcat      2580
     attcactcaa ctcaatttga gagtagtata tccgaatgtc acttttttga cattcatgca      2640
     gatgtcta                                                               2648
//
ID   Hoyak1      repbase;    DNA;    INV; 2603 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoyak1 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoyak1.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2603
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1287..2096
FT                 /product="Hoyak1_1p"
FT                 /translation="MIKAFSDAENIYCVNHLLNNAVEKAIHAIPEMQSLVS
FT                 NCSKLVKYFKKSGMNSTLGVSLKSFCPTRWNTVFYLLESVETNWIELTAVL
FT                 KEKNQTSRVEEININHLGTIVRLLETFENVSKKLEASKRPTIHLILPNLNK
FT                 LIKTCQFDCNDTNIIRDLKFQLNSQLSSTVNPKLKKYHKIALFLFPPTNKL
FT                 IQFSPTEKEAVINDCKILMNHFLQDSCILNNFETELAEDEFAEYLDVPKVE
FT                 TIQTKVEAEIAGYSNINVAYTPDFNVLAW"
XX
SQ   Sequence 2603 BP; 859 A; 461 C; 450 G; 833 T; 0 other;
     tagacatctg catgattcca ctcataacat acgtcacata gaatacattc gaatggaatt        60
     gaattgaatg agtgaaacgc acgaaatgaa acgacattgt atgagtgaga ggttctcatt       120
     ccactcataa cttcctacct gcaacgaaat gaacgtaact gaatgaagcg taaaatgaaa       180
     tgaaacattt ggaaatgcct agaacattcg aatgattcga gttgttgcgt gcgaattcgg       240
     tccattcctt tgcttattct tgacagctgt acttcaaaga cgcaataatg gacgcattat       300
     tttcaaaaaa agccgacaaa tctgtatgta tttgtctaac gttttgtttt aatttactat       360
     tgttgtttta atgtatatat atttataaca attcgcttat ttgttttgat cgtgcttaga       420
     ttaaaacctg tgtatttgtg acctgtccat aagtgtttat tgtgtaattt tttttcagac       480
     ttaattcagt ttgattgcaa tatataggtt gtaaaaggca cagtggacat taaagagaag       540
     ctgactagtg gcatgtacag cctaattgaa aagagaggcc gaagcgaagt ttggcaattt       600
     ttctccaaaa ttaaaaacga tgatggagaa gaactcgtca accttgtagc ttgtaagacg       660
     tgctataccg ttttaaaatt tacaggcagc acatcaaacc tggtcaagca caaatgttat       720
     ttaaataatg caagcaaatt tcgtcaaggt gctccaatag aagttaatca ggaaacaaaa       780
     gaggagggca tatctgttgt aacagaatgg gttgtcaaga attgtcgtcc ccttaaaatt       840
     attgatgact cgggcatcaa aaagtttgca tcatttttaa ttaatgttgg agctacatat       900
     ggtggaaatg tcgacgtcaa taagctgtta ccacatccga caaccttatc ccgaaatatt       960
     tcaacaatat attcgtccca ctttggcccc ataaaatcag aaatacaaac atacaaagcc      1020
     tttggatatg ccattacaag tgacatatgg acagatgact atttgaaggc atcttatttg      1080
     tcatgtaccg tccattacat taaagaggga gttctggtcg atcgccttat ggccatgaag      1140
     tcaatgaagg gcttgcccag cacaggtttg ttaactccat ctttgtgtgt ataagtataa      1200
     ttcattattt ttcttatcaa ggtctcaata tccgaacaaa aattgaggct attttgaagg      1260
     attttggatg tgacctcgtg accaatatga taaaagcctt ttcggacgct gagaatattt      1320
     attgcgtcaa ccatttgtta aataacgctg ttgaaaaggc cattcatgct attcctgaaa      1380
     tgcaaagcct tgtttcaaat tgcagcaagt tggtaaaata cttcaaaaaa agcggaatga      1440
     attcaacact tggagtatcc ttgaagagct tttgtccgac tcggtggaat accgtgtttt      1500
     acctacttga gtcagttgaa accaactgga ttgagttgac agctgtcttg aaggaaaaaa      1560
     atcagacatc tagagtggaa gaaatcaata taaaccattt aggtactatt gttcgattgt      1620
     tggaaacgtt tgaaaatgtg tccaaaaaac tggaagcatc taagcgccca acaatccatc      1680
     ttattttacc aaatttaaat aagctgataa agacctgcca atttgattgc aacgatacaa      1740
     atattattag agacttaaaa ttccaattaa atagccagtt atcatctaca gttaatccaa      1800
     agttgaaaaa atatcacaaa atagccttgt tcctttttcc cccaacaaat aaactaattc      1860
     aattttcacc tactgagaaa gaggcggtca ttaacgattg caaaatttta atgaaccact      1920
     tccttcaaga cagctgcatc ttaaacaact ttgaaactga gttagctgaa gatgaatttg      1980
     ccgaatattt agatgtccct aaagttgaga caattcaaac caaggtggaa gcagaaattg      2040
     caggatattc taacataaat gttgcataca cccctgattt taatgtttta gcttggtgaa      2100
     atttgaataa acaatttttt ccacttttgc ataaagtaag ttgcaaaata ttttgcattc      2160
     cagcaagcag tgcggcttcg gaacgcgcat ttattagcgc aagaaattta attacagaaa      2220
     agcgttgttt aatagccacc aatccagaaa atataaacaa aataatgttt ttgcattcga      2280
     atttaagtta attatattgt tattttagta ataaatttaa tatataacca aattacatat      2340
     atgcatacac aactataaaa acaaatttca tttctttttc attgtttaca gttgtcactc      2400
     gaatcattcg aatgaagcgt ctcaatttac tgtgttctca ttccattcaa ttcatttcca      2460
     tctgtttcgt tgttgtgcga ctgagtcgta cgtaaattca ctcactcact cataccagtt      2520
     tgactttgct ttcattctca ttccattcat tttcggcatt gtgcatttga atgtgccttt      2580
     ttcgccactc atgcagatgt cta                                              2603
//
ID   Hoyak2      repbase;    DNA;    INV; 2561 BP.
XX
AC   .
XX
DT   21-SEP-2009 (Rel. 14.09, Created)
DT   22-MAR-2010 (Rel. 15.04, Last updated, Version 2)
XX
DE   Hoyak2 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; transposase; HOBO;
KW   Hoyak2.
XX
NM   Hoyak2.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2561
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           295..1797
FT                 /product="Hoyak2_1p"
FT                 /translation="MCIKCGKTYQTSGNTTNLSCHIKRIHPNLTVSDLPQR
FT                 QQLSSRSFIEKKYETSSNRKQTLDSALCSYITSDLRPFSVLENKGFRNFVS
FT                 HLDPRYELPSRTTLRNVSMANAYAEKKAKLFELLKNVKHCAITSDCWTSRA
FT                 NECYVTVTCHFVTADFELRNAVLVTEKLIDETTHSSENIANSIRAVLEEWS
FT                 VLGKVTAMVTDNAKNMIKACEILQIRHVPCFAHSINLTVQDCLASENVKPI
FT                 LEKCKRIVAFSKSSTISFVKFREAQDCVRPYSLKQECPTRWNSAFYMVERI
FT                 FITKVAIASVLLNTSKGLMPLTSDEISILEDLKALLSPFEHATVHTSSSTS
FT                 VTVSSVIHVPCGILHNLSALKSKLQTKVVCDDLLQGVNKRLVPYESRTVTR
FT                 MTTILDPRFKKEGFWKTFNSSQGVKSLEEELSHIYAQTKSSTSLNPPTPEP
FT                 TAESNLLFSFLQANKNQKIQSDCVDSILALRHYLNGTNLEPAQNPLDYWKV
FT                 QKKII"
XX
SQ   Sequence 2561 BP; 861 A; 488 C; 491 G; 721 T; 0 other;
     gtcggggaac tcgactatag cgttctctct tgttttttta tcaattcaat aaaattaact        60
     taaaatatga tcagatttaa cagattgtgt ttaatattgg tgttggcggc atttgggatg       120
     aagaagatat tgaaagagca gaacagcaat ggtaagtaga ctatttagtt acaattatat       180
     gatttgtaat gtaaattttt gccaaagtag ttgccgggaa agacgaacaa agcgacgcgg       240
     ccgagggtat gctcacaaat aagaggaaaa aatatgggac atcttctgtt ttaaatgtgt       300
     attaaatgtg gcaaaacata tcaaacaagt gggaatacga ccaacttgtc ttgccacata       360
     aagaggatac atcctaattt aacagtaagt gatttgccac aaaggcaaca gctgtcaagt       420
     cggtcattca ttgagaaaaa atatgaaaca tcgtcgaacc gaaaacaaac actggacagt       480
     gccttatgct cctacattac ctcagacttg cgcccttttt cagtgctgga aaataaaggc       540
     tttagaaatt tcgtaagcca ccttgatcca aggtatgaat tgccttcacg aaccacatta       600
     agaaacgttt cgatggcaaa tgcatacgca gaaaagaagg ccaagttgtt cgaactttta       660
     aaaaacgtaa agcactgtgc aattacttcc gattgctgga cgtcaagagc aaacgagtgc       720
     tatgttactg tgacgtgcca cttcgtgaca gcggacttcg aattgcgcaa cgctgttttg       780
     gtcactgaga agctcatcga cgaaacgacc cactcttcgg aaaacatagc aaactccata       840
     cgcgccgtgc tcgaggaatg gagtgtgtta ggaaaggtca ctgctatggt cacagacaac       900
     gccaaaaata tgataaaggc atgtgagatc ctgcaaatta gacatgttcc atgctttgcg       960
     cactcaataa atttaacagt gcaggactgt ttggcatctg aaaacgtcaa acccatttta      1020
     gaaaagtgta agcgcattgt tgccttttct aaaagtagca caatttcctt tgtcaaattt      1080
     agagaggcgc aggattgcgt acgcccatat agtttgaagc aagagtgtcc aaccaggtgg      1140
     aacagcgcct tttacatggt ggaacgaatc ttcattacga aggttgctat cgcaagcgtt      1200
     ttactaaaca cgtccaaggg gttaatgccg ctaacctcgg atgaaatatc cattctggag      1260
     gacttgaagg cattactttc accgtttgag catgcaacgg tgcacacatc ctcaagtacg      1320
     tctgtgacag tgtcatcagt gattcatgtt ccttgcggta tattacacaa cctgtcagcc      1380
     ctgaaatcga aactccagac aaaggtggta tgcgatgact tgcttcaagg ggtcaataaa      1440
     agattggtcc cctatgaatc tcgtactgtg acacgaatga ccacaatatt agaccctcgc      1500
     tttaaaaagg aggggttttg gaaaacattt aattcctctc aaggagttaa atctttagag      1560
     gaggagctgt cgcacatcta tgctcaaaca aaatcatcta catctttaaa cccgccaaca      1620
     ccagaaccca cagcagagtc caacctgtta ttcagtttct tacaggccaa caaaaatcaa      1680
     aaaattcaaa gcgattgcgt ggattctata ctagctctac gccattattt gaatggtact      1740
     aatttggagc ctgcacaaaa cccattagat tattggaagg tacaaaaaaa aataatttag      1800
     atggtaacca acttaatcca atttcttctt ttaacagata tcaaatgaca ccgcattcaa      1860
     aacatgcgat tttaaagtac ttctgcgttc cggccacttc caccgaaagt gaacgaatgt      1920
     ttagcaagga aggactggtt ttgagcgaaa agcggagctc gctaaaagcc aaaaatatta      1980
     atgttatttt atttttaaac aaaaatgact ggataaatta atttaagtta tgtatctttt      2040
     ttttttgagt agaactcaat gttatttttt attttatcaa ttgaattgtt attttatttt      2100
     aatttttttt tttcttttta tgtttaagaa gtaaaaacta taaggaaact atggacctct      2160
     aataaagctt tttttttata aacaacttgt atccatttga tttatttatt cggaataaaa      2220
     tacactttac aaaaaaaaaa accctaaaaa gttcgatgta tcgatacatc gatgtttttt      2280
     tctgaaaaac atcgaaacat cgatgtaggt aagcagaatt tctgccacaa gtgtcaaaaa      2340
     aacgggaaat gaacacacga cccagacagc agccgtgtgt tccccgagaa aagccagcga      2400
     accaagatgt caattaaaaa agcaatttga ggaattagac gtagttactg acagcaattc      2460
     cccgatcttt tggcctcaga tttttaagaa taaaacaata ccagatataa cgattaattt      2520
     aaataaaaac aagagagaac gctatagtcg agttccccga c                          2561
//
ID   Hoyak3      repbase;    DNA;    INV; 3271 BP.
XX
AC   .
XX
DT   22-SEP-2009 (Rel. 14.09, Created)
DT   22-SEP-2009 (Rel. 14.09, Last updated, Version 1)
XX
DE   Hoyak3 is a putative autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; HOBO; transposase;
KW   Hoyak3.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3271
RA   Ortiz M.F. and Loreto E.L.S.;
RT   "Characterization of new hAT transposable elements in 12
RT   Drosophila genomes.";
RL   Genetica 135(1), 67-75 (2009)DOI 10.1007/s10709-008-9259-5.
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           633..2333
FT                 /product="Hoyak3_1p"
FT                 /translation="MAPSEVWKYFENKAVEGLAVCNICKSSLKNNRISNLK
FT                 AHLQKQHKIHVNVISLENLETSSTSSSKIIRKKIKIEVNKKQLIRLYIGLV
FT                 TEDSIPFNVLNSQNMRNILDPICEGLKTAEGKMMKLNAVNCKNTLEIVANN
FT                 IRTHITAELKNTLLSLKIDSATRMSRNIFGISAQYINSAQIKSIILGMIEL
FT                 KGAGSSGAKNLAAEVIKVLNKYNINLNQIVSITSDNGANMLKATNILSFVS
FT                 EQNNEENDYECTNDDYLDKIDLIEKIPKVLIGNIEVCRCAAHTAQLVALDV
FT                 NKSLDIIKYLLNCRNMTKYIRKPSNGYREIFELKKLKVPQLDCPTRWGSTY
FT                 IMLKNLLEAKDILSKIESLKNRTDEKNFDVDASFWDFIETYCNVFSPLQKS
FT                 IQRFQEEQLHYSNFYAQWLKLKILTEKIVNDSSHNLTKTIGNKILNSIETR
FT                 TKTLLNNKFVVSCLFLDPRFQHILSPQQKTDAINHLKSIWDRLYSLNPTGN
FT                 MCSTPSSSFNQIDNFFYDEEDEMLEAYLSQGVQSKVNSSIDVYTKIENIQL
FT                 AYQRFDIDVLSYWMERKAVY"
XX
SQ   Sequence 3271 BP; 1143 A; 568 C; 597 G; 963 T; 0 other;
     cagtgttcga aaagctgcag tcgaattagc agaagtcgca atatttttgc ttttcactgc        60
     ttctgctgcg agcgatatca gaaagcgaac aattgcttct gcttctgctt ctgaaaaatc       120
     agaagtcgca gtcaaagcat aagtaaaaat cccgcagcga cgaatatcaa aaatcagcag       180
     cagtcgccgt ttttcgtttt ttcgctttct gctttgctgt tgcttttcgt cgctgctgca       240
     gctaccgacg actttcggaa gtcgtcggca gtcgcagcag cataagtcgg tgccttcgac       300
     tgtttgctgc ttttgatttt cgttgctatt gctgctgacc aacagtcgta gcagcataag       360
     tcggtgcctt cgactgtttg ctgcttttga ttttcgttgc tattgctgct gaccaacagt       420
     cgcagcagcg taagtcggtg ctttcgactg tttgctgctt ctgatttttg ctgccgagca       480
     gcataaggcg acagacgcat gaggcgacaa atttcggaag tcatccgcag cgaccgcagc       540
     tttcgcagcg tttatttcct catattaatt ttacttgtaa aacgtttgct gcttgattga       600
     cacgtacgct cacttgcata tttctgctaa ccatggcacc aagtgaagtt tggaaatatt       660
     ttgaaaataa ggcagtcgag ggcttagctg tatgtaatat atgtaaaagc tctctaaaaa       720
     ataacagaat ttcaaattta aaagcacatt tacaaaaaca acacaaaatt catgttaatg       780
     tcattagttt agaaaatctt gaaacttcat caacaagttc ttctaaaata ataagaaaaa       840
     aaataaaaat tgaagtaaat aaaaaacaat taataagatt atatatagga ttggtaaccg       900
     aagatagcat tcccttcaat gttctaaatt cacagaatat gagaaacata cttgatccaa       960
     tttgtgaagg tctaaaaaca gcagaaggaa aaatgatgaa attaaacgca gtaaactgta      1020
     aaaatacatt ggaaatagtg gcaaataata taagaacaca tataacagct gaacttaaaa      1080
     acacgttatt atctttgaaa atagacagtg caacgcgtat gtccagaaat atttttggaa      1140
     taagtgcaca gtatataaat tcggctcaaa taaaatctat aatattagga atgattgagt      1200
     tgaaaggtgc aggatcaagt ggagccaaaa atcttgcagc cgaagtgatc aaagtgctta      1260
     ataaatataa tataaattta aatcaaatcg tatctattac ttctgacaac ggggcaaata      1320
     tgcttaaggc aactaatatt ttgtcatttg tgtctgaaca aaataatgaa gagaacgatt      1380
     acgagtgcac caacgacgat tatttggata aaatagactt aatagaaaaa attcccaaag      1440
     ttttaatagg aaatattgaa gtttgtcgtt gtgctgcaca cacagcacag ctggttgccc      1500
     tcgatgtaaa taaatcattg gacataatta aatacctact taattgtagg aatatgacta      1560
     aatatattag aaaaccatcg aatggatacc gcgaaatatt tgagcttaaa aaattaaaag      1620
     tgccacaatt agactgtcca acaagatggg gatccacgta cataatgtta aaaaacttgt      1680
     tggaagcgaa agatatttta agtaaaattg agtcacttaa aaacagaacg gatgaaaaga      1740
     attttgatgt agatgcctcg ttttgggatt ttattgaaac atattgtaat gtttttagtc      1800
     ccttgcaaaa atctatacaa agattccaag aggagcaact acattatagt aatttttacg      1860
     cacaatggct taaactaaaa atattgaccg aaaaaatagt caatgattca agtcacaatt      1920
     taacaaaaac tattggaaat aaaattttaa attcaataga aacacgaaca aaaacattgt      1980
     taaataataa atttgttgtt tcatgcttgt ttttggatcc ccgctttcaa catatattgt      2040
     ctccgcaaca aaaaaccgac gcaataaatc atttaaaatc aatatgggac agactatata      2100
     gtctgaaccc tactggcaat atgtgttcaa ctcccagctc tagcttcaat caaatagaca      2160
     acttctttta tgacgaggaa gacgaaatgt tagaggccta tttatcgcaa ggcgttcaat      2220
     caaaagtaaa tagttcaata gacgtgtaca caaaaattga aaatatacaa cttgcatatc      2280
     aaagatttga catagacgtg ctatcttact ggatggaaag gaaagcagta tactgaccag      2340
     gagttatacg cagttagtaa cgtttgttat gccgtaccgc caactcaggt aaataaaaat      2400
     ggcataaata atttaggttc cttcttagat agtttcttat tttataacag gtgtcgattg      2460
     aacgagcatt ctccactctg aggctggtgc ttaccgacta ccgcaatcga ttaagccagg      2520
     atgttcttga gaacatattg ctagtcaaat taaatccaac ctttttggac atggccattg      2580
     atactttgcc actttttgaa aacgaagaac ttactgttag tggtttataa aataatagtt      2640
     ataacagaaa gcaataaaaa tttatttatg tatcattttt caaaattcat atactaatat      2700
     gtttttattt ttgctaattt tgtttctata atttttttaa aattgattag ttgtattatt      2760
     ttataagcat tatacaaaaa gaaagtccaa aaaataaaaa agtacaagaa gtacgctata      2820
     agtaatttcc aaaaaattta gtcattcgta attaaataaa agtcgcggct actgaatgaa      2880
     tttgtcgcct catgcgtctg tcgccttatg ctgctcggca gcaaaaatca gaagcagcaa      2940
     acagtcgaag gcgccgactt ctgctgctgc gactgttggt cagcagcaat agcaacgaaa      3000
     atcaaaagca gcaaacagtc aaaggcaccg acttatgctg ctgcgactgc cgacgacttc      3060
     cgaaagtcgt cggtagctgc agcagcgacg aacgtctacg atgaaaagca acagcaaagc      3120
     agaaagcgaa aaacggcgat tgctgctgat ttttgatatt cgtcgctgcg ggatttttac      3180
     ttatgctttg actgcgactt ctgatttttc agaagcagaa gcagaagcaa aatcatgtga      3240
     aattaaactt acggcagttt tttaaacgct g                                     3271
//
ID   I-10B_LMi   repbase;    DNA;    INV; 1860 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-10B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1860
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3103-3103 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1860 BP; 578 A; 367 C; 374 G; 537 T; 4 other;
     atatatttaa agtcaaatca tctgttgaat tctcggatat gtggctagac tccaagctta        60
     gttggatgac acacatcaat ttttttattt ccaactgtat tccaatatga acatcatccg       120
     atcattaacc agagtctggt ggggagcgaa tcgcaatgtg ttattgacca tatccataca       180
     gagctttaat tagaagtagg gtcgagtatg gatgcacagt gtatgggaat gctaatatca       240
     ggtacctccg taaactggat acgtttsaat acagttgcat ccaaacatgt cttggagcca       300
     tgagatcaac tcctaccaat gctctcttag tagaggcact ggaaatgcct cttcatttta       360
     ggcgtcagtg gttagccagc agatatatat taggaaggtt ggcgataacg aaacacccag       420
     taactgagaa atgtgattta ctggctgtat tggctaacag aacactgcat cgtcccccag       480
     acttctttag aagttttctg gcactgamag acctgagcaa cagtattata ctacaagaag       540
     actttctcag ttkgaatgcc ccttttgtcc cagcccatct gtccctccag tgctatattt       600
     ggaattcaac ccttgcatkg gtagcagtct taataatatg atagttgatg catacctccg       660
     cgagaagtgg aatgacgctt tacatatata cactgatggc tcacgttctg catcagaagg       720
     taatgttgga tgtgctatct tatgcccaca aacaggccac tatgacaaat acaagctgcc       780
     atcgtcaacc tcctccttta ctgcggaagc aatagcgatc atggaagcta tcaagtactc       840
     ttcaacccaa aattacgacc gtattttaat tatttctgac tcaaaaagcg ctttgacttc       900
     catagagagt agaaactggg gtaaatacag cagtaagctg gttattgaca tcgcacggga       960
     aatgacagaa tgctctcgaa gaaataaata tgtttactta atgtggataa aatcacatgc      1020
     aggtatttta cataatgaaa ctgtagacca gttggccaaa gaagcagcta attccggtgt      1080
     ttatttggat atccggctac ctttcaccga cttcttgcat caaataaaac ttggaatcag      1140
     atatgactgg gaagaagaat ggagaacatc agctttgtat aaaggaaaaa cattataatt      1200
     ggatacagcc tcatatacct ggtcaaccat ggtttcacag cttgccccta cacaggagag      1260
     ctacttcttc aatttcgagg atgagattta atcacggcag cttcccctca catttattcc      1320
     gtttacaact caggaattca gataaatgtg actgtaacaa cttagatgtt ggggacatga      1380
     atcatttgat attcgcctgt ccaaggtacg gtcaatacag agagcagttt tttgcagaac      1440
     ttcggagact tagagttcct ctcccaacaa gtgtcatcgc ccttctagta atggcagaca      1500
     aagcagtgct tggatgtctg ataaatttat ttcagcgagc agtctgaggg tatgacaaaa      1560
     taactgtggg cctataaata cagtcaagaa gagacaattt tacaactagt ttgattcaca      1620
     agcatttaag cacagacatg tcgaacttta caaatctctg atcattcagt acgaagtgct      1680
     tcgtatatcc gcgagtgtat gcagagcgct tggagtacaa agtgtttgga aatgaaattg      1740
     ttatgtccag tgatgaagaa tcaaaattca atctgtgcag ctcaaaatgc agtagtttaa      1800
     attttttgtg tatttaaatg gctaaaatag tgtattttcg ctaaaggcca aataaattaa      1860
//
ID   I-10_AAe    repbase;    DNA;    INV; 5749 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5749
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1365-1365 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           492..1778
FT                 /product="I-10_AAe_1p"
FT                 /translation="METDGGEGDSNDNSHSKESPPSKPFRIKIYPSTFSGP
FT                 FVVYFRKKERPINVLLISSEVYKIYKSVKEIKKISLDKLRVVFGSREDANA
FT                 LLESKLFVNSYRVYAPCDSCEINGVIYDEDLNCDDIKNHGLGIFRNKSIAP
FT                 VQILECNRLSKLFFNGSESKYVYSNCIKITFSGSVLPDYVMIDNVIFHVRL
FT                 YYPKIMHCERCLLFGHTASFCSNKLKCSKCGDGHPTSDCKENSGVCIHCRK
FT                 KHISFEQCTVYIENQSKLNQKIKNKNLLSYADIMKSSDNINSPNTYEILPD
FT                 NDDNDFGKQQNFTYNPPIKRKRTHNNSSKTNSFSFEPQPSSSYNTNFPVLK
FT                 NCSQQKNIPGFKKNNTSFDEQFKQTDKINDNENSDNSILKILEELVDFLEL
FT                 SEFWKKIIKMILPFLASILNKLNAVGPIISSLFSL"
FT   CDS           1781..5470
FT                 /product="I-10_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASKDSKILKILQWNCRSITNKIDRLKVLITNFNIDI
FT                 FCLNETWLERTKFFRIPQFKIIRKDRTVSYGGVLIGIRDNIEFKYLDLSVE
FT                 SQIEYVAVSITKNGFTFCIICFYIPPNASFSVSQIKNILDLIPSPFYILGD
FT                 FNAHNIAWGSHKSDGRGSLIMDLIDELNLNILNDGSLTRIAVPPNNPSCID
FT                 LSLCSNSLSLMSSWKTINDPNNSDHLPILIEFQNTRCDKFTQETFVFDLYK
FT                 NVDWIKFADLMSISIIRSDTSLSAIEKYNLFSKLLFECLHKSQKKKVITGN
FT                 LKKNRPSFWWDDECSNALKNKSVAFKLFRRSGRREDYFLYCKAEALFTRIT
FT                 KFKKRNFWRHFVESLDKETSLAKLWSVARNLRNYDSSDPNVLEYSEAWIEQ
FT                 FASKICPDFVPTLVNFKNQTVNYFPELCVPFSLEELHLALSLTKNTAPGID
FT                 NIKFIVLKKLPEDCKEFLLSIYNLFLSKNIIPFEWRFVKVVSILKPGKDPS
FT                 LADSRRPISLLSCLRKLMERMLLNRLELWAEKNNIFSSSQYGFRKGRGTRD
FT                 CTALLASQIQLSFNKKQDVVSTFLDVSGAYDSVLIDLLFKKMNNLKIPNLI
FT                 SNFLYNLFSLKIMHFFHNGSSKIIRHSCFGLPQGSSLSPFLYNLFTSDMMN
FT                 IIPNGCFLIQFADDNVLSISGKNREIIRHFMQSALDNIDTWAFDNGFTFSV
FT                 QKTKFMIFSRKHSTISISLYLNGYEIEQVFDYKYLGIWFDSKLNWASHISY
FT                 IQKVCSKRINFLRSITGTWWGAHPSDLLTLYKTTIRSVMEYGCFTFGNAVQ
FT                 THFSKLEKLQFRCLRICLKLLNSTHTQSIEVLAGIEPLKIRFQKLNCKFLL
FT                 QCVSYKHPIIDNLKSLYEINPTSKILSSFTYCLNENLTPISSPGFQNYNIN
FT                 IHTFRPLIDLSLYEELKQIPKIEHPRFANYLFERKFEGISRDQFYFTDGSL
FT                 IQNVAGFGVFNNFLAHFFKLQNPCSIFIAEITALYFACNLIRLFTPNLFII
FT                 CSDSLSSLHALNSINFNSKTHHILLELKNLLYDLYTQGFLIKFLWVPAHCN
FT                 IYGNEQADSLAKLGVTRGIIYNREICASEYHSKLNKYCMDNWQHFWNSSDK
FT                 GRWCHSICPFVDKFPWFKNISVNRNFICTFSRIMSNHYICNSYLYRFDMKD
FT                 SNLCDCGEFYEDIDHIVFVCTKFMIPRNKFIKNLKIFYQTPPTSVRDILGS
FT                 KFYPTLKLLYNYLNEISYLV"
XX
SQ   Sequence 5749 BP; 1877 A; 790 C; 864 G; 2218 T; 0 other;
     catactcggt aagtaggcct tgaccaggca acacggtttt tttcttcgct tgtcattttt        60
     ttctccaatt tcagattcga gattttccga ggatttcaat tttggacgtt gatgttggtt       120
     acgttgtttc ctgttttcaa cttactttca agagtttgtg ttcagatatt gggattcaaa       180
     aacttcaaga atttgtcgat ttgtggaatt attcatcgga ggaccgtctt caaaattcta       240
     agtatcattc gagatttccc aaggatttca atttgggacg ttgatgttgg atacgttttt       300
     cctgttttca acttactctc aagagttggt gttcagaaac cgggattcaa acatttcaag       360
     aatttgttca tttgtggaat tattcatcgg agggccgtct ttaaaaatct aagtatcgtt       420
     tgtatttgtt ttgttcctta cgttatttct tattctattc tgttcattac tgtttacatt       480
     tagtttatat tatggaaact gacggagggg aaggagattc gaatgataat tctcattcta       540
     aagagtctcc tccttcaaaa ccttttcgga taaaaattta tccttctact ttctcgggtc       600
     catttgttgt ttactttcgt aaaaaagaaa gacccattaa tgttttattg atttcttcag       660
     aggtttataa aatatataaa tctgtgaaag aaatcaaaaa aatttcttta gataaattaa       720
     gagttgtttt tggatctaga gaggatgcca atgccctctt agaatctaaa ttgtttgtaa       780
     attcatatcg tgtatatgct ccatgtgatt cttgtgaaat caatggagtt atatacgatg       840
     aagatttaaa ttgtgatgac attaaaaatc acggtttagg tattttcaga aacaaatcca       900
     ttgcaccagt tcagattttg gaatgcaatc gattatccaa attatttttt aatggtagtg       960
     aatctaaata tgtttattca aattgcataa aaattacatt ttctggttct gtgttaccag      1020
     attatgtaat gattgataat gttatttttc atgttaggct ttactatcca aagataatgc      1080
     actgtgagcg ttgtctccta tttggtcata ctgctagttt ttgttcaaac aaattaaaat      1140
     gttctaaatg cggagatggg catccgacct cagattgtaa ggaaaattct ggtgtttgca      1200
     ttcattgtag aaaaaaacat atttcttttg aacaatgtac agtttatatt gaaaaccaat      1260
     ccaaattaaa tcaaaaaatt aaaaacaaaa atctcttatc atatgcagat attatgaaat      1320
     catcagacaa tattaattct ccaaatactt atgaaatttt accagataat gatgataatg      1380
     attttgggaa acaacagaat ttcacttaca atcctcccat taaaagaaaa agaacacata      1440
     ataattcatc aaaaactaat tcatttagtt ttgaacctca accatcatct tcttataaca      1500
     caaattttcc tgtacttaaa aattgtagtc agcaaaaaaa tattcctggt tttaaaaaaa      1560
     ataatacttc ttttgatgaa caatttaaac aaactgataa gatcaatgat aatgaaaatt      1620
     ctgacaattc aattttgaaa atattagaag aattagttga ttttttggaa cttagtgaat      1680
     tctggaaaaa aataattaaa atgattctac ctttcttggc ttctatttta aataaactga      1740
     atgcagttgg acccatcatt tcatctcttt tttcattgta atggcttcga aggattcaaa      1800
     aattttgaaa atattacagt ggaattgtcg cagcataact aacaaaattg acagacttaa      1860
     agtattgata acaaacttca atattgatat attttgttta aatgaaactt ggttggaaag      1920
     aaccaaattt ttcagaattc cacaattcaa aattatacgt aaagatagaa cagtttcata      1980
     tggaggtgtt ttaattggta ttcgagacaa tattgaattt aaatatttag atttatcggt      2040
     ggaatcccaa attgaatatg tagctgtttc aattacaaaa aatggtttta ctttttgtat      2100
     aatttgtttt tatattcctc ctaatgcttc tttttcagta tcccaaatta aaaacatttt      2160
     agatttgatt ccttcccctt tctatatttt gggagatttt aatgctcata atatagcatg      2220
     gggtagtcac aaatctgatg gtagaggttc attgataatg gatttgattg atgaattaaa      2280
     cttgaatatt ttgaatgatg gatctttgac tagaattgca gttcctccta ataatccttc      2340
     atgtattgac ttatcccttt gttcaaatag tttatccttg atgtcttctt ggaaaactat      2400
     taatgatcca aataatagtg atcatttacc tattttgatt gaattccaaa atactagatg      2460
     tgacaaattt acacaagaga cttttgtatt tgatctatat aaaaatgtag actggattaa      2520
     atttgcggat ttgatgtcaa tttcaattat aaggagtgat acttctcttt ctgcaattga      2580
     aaaatataat cttttttcaa aattgttgtt tgaatgctta cataaatctc agaaaaagaa      2640
     ggttattaca ggaaacttaa aaaaaaatcg gccttctttc tggtgggatg atgaatgttc      2700
     aaatgctttg aaaaacaaat ctgttgcatt taaattattt cgtagatcag gtcgaagaga      2760
     agattatttt ttgtattgta aagctgaagc tttatttaca agaattacca aatttaagaa      2820
     aagaaatttt tggagacatt ttgttgaaag tcttgataaa gaaacttctt tagctaaatt      2880
     atggtctgtg gcaagaaatt tgagaaatta tgattcttca gatccgaatg tattggaata      2940
     ctctgaagct tggattgaac aatttgcatc taaaatatgt cctgattttg ttcctacact      3000
     tgttaatttt aaaaatcaaa ctgttaatta ttttcctgag ctttgtgttc ctttttcttt      3060
     agaggaatta catttggctt tatcactcac taaaaatact gccccaggta ttgataatat      3120
     taaattcata gttcttaaaa aattaccaga ggattgtaag gaatttttac tttcaatata      3180
     taatttattc ctttctaaaa atattattcc ttttgaatgg cgtttcgtaa aagtagtaag      3240
     tattcttaaa cctggtaaag atccttcatt agctgatagt cgaagaccta tcagtttatt      3300
     atcatgttta cgtaaactta tggaacgtat gcttttaaat cggttagaat tatgggcaga      3360
     gaaaaataat attttttcat cttcccaata tggattcaga aaaggtcgag gtactcgtga      3420
     ttgtaccgct cttttagctt ctcaaataca actttcattt aataaaaaac aagatgtagt      3480
     ttctactttt cttgatgttt ctggtgcata cgattctgtt ttgattgatt tgcttttcaa      3540
     gaaaatgaac aatttaaaaa ttcctaattt aatttcaaat ttcttgtata acttattttc      3600
     tttgaaaata atgcattttt tccataatgg gtcatctaaa attattcgtc atagttgttt      3660
     tgggttacct caaggatcaa gtttgagtcc atttttgtat aatttattta catcagatat      3720
     gatgaatatt attcctaatg gatgtttttt aatacagttt gctgatgata atgttttatc      3780
     tattagtggt aaaaatagag aaattatcag acatttcatg caatctgcgt tagataatat      3840
     tgatacctgg gcatttgata atggttttac attttcagtt caaaaaacta aatttatgat      3900
     tttttcaaga aaacattcaa caattagtat tagtttatat ctaaatggat atgaaattga      3960
     acaagtgttt gattataaat accttggtat atggtttgat tctaaattaa attgggcaag      4020
     tcatatttca tatattcaaa aagtttgttc gaaaagaata aacttccttc gatcaattac      4080
     tggtacttgg tggggtgctc atccgtctga tttattaacg ctttacaaaa caactattcg      4140
     ctctgtgatg gaatatggtt gttttacatt tggtaatgct gttcaaactc atttttcaaa      4200
     acttgaaaaa ttgcaatttc gttgtttaag aatttgtttg aagcttctga attcaactca      4260
     tactcaatct attgaagtat tggctggaat tgaaccactc aaaattcgat ttcaaaaatt      4320
     aaattgtaaa tttttgttgc aatgtgtttc atacaaacat ccgattattg ataatttaaa      4380
     atcgttatat gaaatcaacc cgacaagtaa aatattaagc tcctttacat attgtttaaa      4440
     tgagaattta acgccaattt cttcccctgg attccaaaat tacaatatta atattcatac      4500
     ttttcgaccc cttattgatt tatctttata tgaagaattg aaacaaattc caaaaattga      4560
     acatccgcgt tttgcaaatt atttatttga acgtaaattt gaaggtatca gtcgtgatca      4620
     attttatttc actgatggat ctttaattca gaatgttgct ggatttggag tatttaataa      4680
     ttttttggct cactttttta aattacaaaa tccttgttct atattcatag ctgagataac      4740
     tgctttatat tttgcatgta acttaattag actttttact ccaaacttat ttataatatg      4800
     ttctgatagt ttgagttctc ttcatgcttt gaactccata aactttaatt caaaaactca      4860
     tcacattctt ttggagctta aaaatctttt gtatgattta tatactcaag ggtttttaat      4920
     taaatttttg tgggttcctg ctcattgtaa tatttatggc aatgaacaag ctgattcttt      4980
     ggccaaatta ggggttactc gtggaattat ttacaataga gaaatttgtg cttcagaata      5040
     tcattcaaaa cttaataaat attgtatgga taattggcaa catttttgga attcgagtga      5100
     taaaggacgt tggtgtcatt ccatttgtcc gtttgttgat aaattcccat ggtttaaaaa      5160
     catatctgta aatagaaatt ttatttgcac tttttcacga ataatgtcga atcattacat      5220
     atgcaacagt tatttatatc gctttgatat gaaggattca aatttatgcg attgtgggga      5280
     attttatgaa gatattgatc atattgtgtt tgtatgcacc aaatttatga tacctagaaa      5340
     taaattcatt aaaaatttga aaatctttta ccaaactcct cctacatctg tccgtgatat      5400
     acttggaagt aaattttatc ccactttgaa actattatat aattatctaa atgagatatc      5460
     atatcttgtt tgatttgtat ctgccttaat tttctttgtt tttttttcag gattgaaata      5520
     tgaaacacct accatgagag attatttccc atttttctga ttgaacgttt cagaagatca      5580
     agaatctggc tctgttatgg ttctatccga gtgagccttt agtttataag atatttatta      5640
     taacgtttta aaaaagatga agaggttttg tgcctttttg agaagatcta attaagtgat      5700
     cactcaaagg ggtttttccc tctttcaaaa ttttagttaa aataaataa                  5749
//
ID   I-10_DBi    repbase;    DNA;    INV; 1136 BP.
XX
AC   .
XX
DT   11-JAN-2012 (Rel. 17.06, Created)
DT   11-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-10_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1136
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 934-934 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Only 3 sequences. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(4..219,153..920)
FT                 /product="I-10_DBi_1p"
FT                 /note="ribonuclease H."
FT                 /translation="DRLIVXXKSFHPLRGKYAPPPLTLHFMIFKNQGPQFK
FT                 QLFEXVTHKYSDRKWXPMVQSPMPQPPLQWLTNTDEMXTDGSKSDATTTFA
FT                 VVDQHRLIVSWGRLPHHFSVFAAEAVAIIKAIKFALELKGSYIICSDSLST
FT                 LQGVQNFYNNNNLLSEIRHLCIKNSSKIKLLWVPAHIGIFGNEMADNAAKL
FT                 AGRALCHTIIPGVQQDIWKNIKNILRDIELEDWSSFNHWYKQFNPDKKDIK
FT                 FPTSLNGRECAILTRLKTGHTNLTHKHILNGESRLNCPSCGEELSVKHLLY
FT                 TCGHYQNREQTYSVSPRHQIYYLTSQLPTPNYYYLS"
XX
SQ   Sequence 1136 BP; 378 A; 261 C; 183 G; 308 T; 6 other;
     taggatcgcc ttatcgttgk aamaaagtca ttccatcccc tmcgtggaaa atacgctcca        60
     ccgccattga cactacactt catgattttc aaaaatcaag gaccccaatt taagcagctw       120
     ttcgaagmag ttacccataa atactccgat aggaaatggm taccgatggt tcaaagtccg       180
     atgccacaac cacctttgca gtggttgacc aacacagatt aattgtttct tggggtcgac       240
     tacctcacca cttctcagtt tttgctgcgg aagcagtagc tataattaag gcaattaaat       300
     ttgctctcga acttaaagga agttatatca tctgcagtga tagtctgtcc accctgcaag       360
     gagtacaaaa cttctacaat aacaataacc tgttatccga aattcgtcac ctctgcatca       420
     aaaacagtag caaaattaaa ctgttatggg tcccggccca tataggaata tttgggaacg       480
     agatggccga caatgctgca aaattagccg gtcgggctct gtgccataca atcatacctg       540
     gagtacaaca ggacatctgg aaaaacatca aaaacatttt gcgagacatc gaactggaag       600
     actggtcgtc gtttaaccac tggtataaac aatttaaccc tgacaagaaa gacatcaagt       660
     tccctacttc actcaacgga agggaatgcg ccattctcac acgattaaaa accggacaca       720
     caaatctcac gcataagcac atccttaatg gggaaagtcg gctaaactgc cctagttgcg       780
     gagaagaact atcagtaaaa catctactgt atacctgtgg acactaccaa aacagagaac       840
     aaacctattc ggtctcaccc cgccatcaaa tctattatct gacctcacag ctgccaactc       900
     caaactatta ttatctttcc taaggaattg taaaattaca cacctaattt aaactcccct       960
     tttaattatc taatatccat ttcttcaaat gttaaatctc aaatacaaat gtaaacaaat      1020
     tgttatcaat tgtcgagtcg atggccatag tagctagtta ctccttcctc taaattagtt      1080
     attatattgt aaattcgatt tatgtattat agctaaaatt gaattaaaat taatta          1136
//
ID   I-10_LMi    repbase;    DNA;    INV; 5730 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5730
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3143-3143 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(218..673,2074..2868,2846..3229,3049..3816,
FT                 3820..4035,4191..5276)
FT                 /product="I-10_LMi_1p"
FT                 /translation="SSCVYEHGSGCVEPIGSKALLERNEDLKEKRLAFTAQ
FT                 QHQHHPTKEVPNQSSASSGMPVFTLYITTQVLSPIRGRSFAVSPNSVKEQT
FT                 PQQVQSGQGQIACHTNVIYEQNKTNRYHNDATGPFYVFAEGTNGDVVKYHP
FT                 MTLGKLLHTSDTNLASFVCSAASSFLICGDFNSHHSAWGNVFNDSEGLHLF
FT                 SAIEDLDLVILNDSSPTLIPSPFQRPTAVDISLVSPDFHQITKWETFSYSL
FT                 GSNHFPIKIVLGFEINLSRKYYANSPWKIKDANWEKYQKIIQEELKKQTPS
FT                 WTPREAYAALTSAINLASNNSIPQCKTEFYSTKPRVLWWNSDCSKVVAKRR
FT                 LALSRYRKEQTLQLFLEYKRIDANTKRFLKRRKKEAWINYCNRLNKFSNIS
FT                 EVWKTVRSLKYGNSVVSPLVVVRYLHWWWLGEFVAKMAPPSCPEAPMDILQ
FT                 ERDLSHHLLAPFSRRELESVMKNFTNTYPGIDCVHYDMIKNLPRDGLDLLL
FT                 WILMKHGEEGYSWLNGLRKLLHLYSRQENVRKYIPHIDQSPVLLCGENSKF
FT                 ASGWIRSASLDFNETWGRGVLMVEWTTQIITPILKTGKCPKIHTSYRPIAC
FT                 PPVWGKLLKDFQSRLENWLEYKELLQRSQFGFLKGRGTLDSITILCSDILA
FT                 ALHEKKFLSSLFLDVTSAYDNVQISMLLEKLKRFDIPASWIYGISTFLMRR
FT                 TIYVRYQDQFRGPLILSKGLPQGAILSPLLYILYSKDLEEIIPPNVHILQY
FT                 ADDICLYSSSSMEDSAVDQLVAAVVEVDDWLQANGLEISSSKSSVIIFSNR
FT                 VHHNVIHVRSYSFQVKSSVKFLGMWLDSRLNWITHINYIITNCIPIMNIIR
FT                 SLTRVWWGANPNVLLDYTEHQVILGRLAITNHPVIEKCEMLQDVLANRALH
FT                 RPPDFFRSFQALKDLRNSIIATKRLPQFERPFCPSPSVVPVRYLEFNSYIG
FT                 CNLNVIVETYLREKWSDALHIYTDGSCTVSEGSVRCAILCPQTGHYEQYKL
FT                 PSSASSFTAEAIAIMKAIKYSLTQSYDRILILSDSKSVLSAIENRNWDKNS
FT                 SKLVIDITQELTDCSRRNKFVFLMWIKSHADILYNESVDQLAKEAAQSGVH
FT                 LDIQLPFTDFFREIKLAIRSHWEEEWRSSALYKGRHYSWIQPGIPSQPWFH
FT                 NLSLHRRVTSSITRMRFNHGSFPSHLFRLHLRNTDKCDCNFSDVGDINHLI
FT                 FVCPRYCQYRDQFLSELRGTGCLSQ"
XX
SQ   Sequence 5730 BP; 1811 A; 1081 C; 1159 G; 1679 T; 0 other;
     tcggggtagc taattttcga agcttttttc cttgattaat tcaagaaatc cgtgaaggac        60
     tattataaac tgtgtgagaa tttttataca aaaggaaaaa gttttaataa attaattagt       120
     cagtggtcct tcaagaatgg acagtggaca gtactgggga gggaggaagt ccctctcgtg       180
     atggtgagtt actcgcccgc gaaatacaaa gtgctgaagc tcttgtgtgt atgagcatgg       240
     aagtggatgc gtcgaaccga ttggcagcaa agctttgtta gaaagaaatg aagatttaaa       300
     ggagaaaaga ctagcattta ctgctcaaca acatcaacat catcctacaa aggaggtacc       360
     gaatcagtca tctgctagct caggtatgcc tgtatttacc ctttacataa cgactcaagt       420
     cctcagccct attcggggca ggagttttgc tgtctcgccg aattctgtta aggagcagac       480
     tccgcaacaa gtacaatccg ggcaggggca aattgcgtgt catactaatg tgatctatga       540
     acaaaataag accaataggt atcataatga cgcaacaggg cctttttatg tgtttgcaga       600
     gggaaccaac ggcgacgttg ttaaatatca tcctatgaca ttggggaaac tgctgcatac       660
     ctcagatacg aattaaaaaa aaatttcgaa cctcaaagtc gttgaaagaa tggaattcga       720
     gttgactttt ttcagggaat tcagcaaaca gatttgtaga ggtcaatcct ttaagtaata       780
     aacaatggtt gcttatgttc ctaaccacag aaccatcgcc aggagtgata aggaatgttg       840
     acattgagtt gtcagaatca gagttaaagg aagcgtaact aaattcgcag gatgtttaaa       900
     cgtacaaatc aaatgggcgc tgtaattaat gtcccccgcc aaacatgtgt tcttacgttt       960
     gcctcacaat ttttgccagc gccactgcgt acggaatgcg ttgtccatta ggccgtacat      1020
     tccgtcagtc agacagtgtt ttcgtcgtct ccgtttggtc atttgagtta ccagtgtcaa      1080
     tcagatgctc gctgttacac ttgtggagga aatcatgatg tagcacagtt tcaagtgtaa      1140
     cagcttgttg tgtccactgc agaggggctc gtacggcaag agacaaactc gtcctatgtt      1200
     tttaaaacaa caagaggtta agaaagcttc agctacctta tatctctttc aaggaagcgg      1260
     aagaatatgt gaataaaaga ccatatgctg aggtggcaga aaccatagta aggacaagtt      1320
     ggattgggag agggaatttc ccagcattca gaattcacag catagattca caaccatcat      1380
     tcatcctaac agacccaaac ctgggaagcg tacatcattt ccaactcctc tctttgctaa      1440
     tactaacttg ccggcctctc caataacaga aaagccgtag acaccggcgc tctcatagct      1500
     gtttttccac aacagtcata tgcacctagt cagcttcttg gagaagagga tagaaatata      1560
     gaattgattg aaaagttttt ctggaatatt acacctcata acgcagttta cctcttcaaa      1620
     taaagttaat gtgggccaca cagacatcta taatatggtt gcgtctattt tattgaagag      1680
     ataaaacatg gatcaaaacc agataacaac acctcctaat tgcaacatga acttaatata      1740
     ttacaatgga atgctaggtc cgcaatttca aataagggga ttctagaaaa agaactactc      1800
     aatcacaata ttgcaattgc tgcatccaag aaacgtggtt taaaccacaa acctttgtta      1860
     aattcaaagg attcaatctt gtgagatcga tagaccagat ggtaaagggg gagtggcact      1920
     actaattaga gatactatca gttataaaga aatacctctc agatgcaata atctgcattt      1980
     ccaggtagca gctgctaaag tagaaacttt gaaaggtaac ttcactatta tgtcagtata      2040
     taaagcaccg aggttagcaa cgagtaataa tgattggctt catttgtttg ctcagctgca      2100
     tcctcctttc ttatttgtgg tgattttaac tcccatcata gtgcttgggg caacgtattt      2160
     aacgattcag aaggtttaca cctcttcagt gcaatcgaag atctggattt ggtaattttg      2220
     aatgatagtt ccccaacatt gataccttcc ccttttcaac gaccaacagc agtagacata      2280
     agtctcgttt ctcccgattt ccaccaaatt acgaagtggg agactttcag ttattctctg      2340
     ggatcaaacc atttccctat aaaaatcgta ttgggttttg agataaactt gagtaggaaa      2400
     tattatgcaa atagcccatg gaaaataaaa gatgccaatt gggaaaaata tcagaaaatt      2460
     attcaagaag aactcaagaa acagacacca tcatggacgc caagggaagc ttatgctgca      2520
     cttacttcgg ccatcaatct agcaagtaat aactcaatac cacagtgtaa aacagagttt      2580
     tattcgacga agccacgtgt tctctggtgg aattctgatt gttccaaagt tgtagccaag      2640
     agaagactag ctttatccag atatcgcaag gagcagactt tacaattatt cctggaatac      2700
     aaaaggatag atgccaacac taagagattc ctgaagagaa gaaaaaagga ggcttggata      2760
     aattactgta atagactgaa taaattctct aacatctcag aggtttggaa gacagttcgc      2820
     tctctaaaat atggtaactc agtagtatct ccattggtgg tggttaggtg aatttgtggc      2880
     aaaaatggct cctccgtctt gcccagaagc gccaatggat attctgcaag aaagagattt      2940
     gagtcaccat ttacttgctc cattctccag acgtgaattg gaatctgtta tgaaaaattt      3000
     cacgaacaca tatccgggaa ttgattgtgt tcattatgat atgattaaaa atttgcctcg      3060
     ggatggatta gatctgcttc tttggatttt aatgaaacat ggggaagagg ggtactcatg      3120
     gttgaatgga ctacgcaaat tattacacct atactcaaga caggaaaatg tccgaaaata      3180
     catacctcat atagaccaat cgcctgtcct cctgtgtggg gaaaactctt gaaagacttt      3240
     caaagccgac ttgagaattg gctggaatac aaggaattac tgcaacgatc ccagtttggc      3300
     tttcttaaag gcagaggaac gctggacagt ataacaattc tatgcagcga tattctcgct      3360
     gctctccatg aaaagaagtt cttatcatca ttatttttag acgtcacatc agcatatgat      3420
     aatgttcaga tctctatgct tttagaaaaa ctaaaacgat ttgatattcc tgccagttgg      3480
     atatatggaa ttagtacttt tttgatgagg agaacaatat atgtccgtta ccaggatcag      3540
     ttcagaggac ctctgatctt atctaaaggc ttaccccagg gagcaatcct tagccccttg      3600
     ttatacatac tttattctaa ggatcttgaa gaaattattc cgccaaatgt tcatatattg      3660
     cagtatgcgg acgatatatg tttatactca tccagttcca tggaagattc tgcagtcgac      3720
     cagttagtag cagcagtagt agaggtggac gattggttac aagcaaatgg ccttgaaata      3780
     tcatcttcaa aatcttcagt tatcattttt tcaaattgac gtgtgcacca taatgtgatt      3840
     catgttagga gttattcatt tcaagtcaaa tcatctgtta aattcttagg aatgtggctc      3900
     gattccaggc ttaattggat aacacacatc aattacatta ttactaactg tattccgatt      3960
     atgaacatca tccgatcatt aaccagagtc tggtgggggg caaatcccaa tgtgctactg      4020
     gactatacag agcattaatt agaacaggat agagtatgat gcacagtaat gggaatgcca      4080
     atatcaagta catctgtaaa ctaggaggtt tcaatatagt tgcatccgaa catgctcgga      4140
     gtggaagcgc tggaaatgcc tcttcatttt aggcgtcagt ggctggctag caagtaatac      4200
     taggaaggtt agcgataacg aatcacccag taattgaaaa atgtgaaatg ctgcaggatg      4260
     tattggctaa cagagctctg catcgtcccc cagacttctt tagaagtttt caggcgctga      4320
     aagacctgag aaatagtatt attgcaacaa aaagacttcc acagtttgaa cggccttttt      4380
     gtcctagtcc ttcagttgtt ccagtacgat acttggaatt taactcttat attggatgca      4440
     atcttaatgt gattgtcgag acatacctcc gtgagaagtg gtcagatgct ctacatatat      4500
     acactgatgg atcatgtact gtttccgaag gtagtgtcag atgtgctatc ctatgtccac      4560
     aaacgggtca ctatgagcaa tataaactac cgtcatcagc ctcttctttt actgctgaag      4620
     caatagcaat tatgaaggct attaagtact ctttgaccca gagttacgac cgtattttaa      4680
     tattgtctga ctcaaaaagt gttttgagtg ccatagagaa caggaattgg gataaaaaca      4740
     gcagtaagct ggttattgac atcacacagg aactgacaga ttgctctcga agaaataaat      4800
     ttgttttctt aatgtggatt aaatctcatg cagatatatt atataacgaa tctgttgacc      4860
     agttggccaa agaagcagcc caatctggtg ttcacttgga catccagtta ccttttactg      4920
     actttttccg tgaaataaaa cttgcaatca gaagtcactg ggaagaagaa tggagatcgt      4980
     cagctttgta caaaggaaga cattatagtt ggatacagcc aggcattccc agccaaccat      5040
     ggtttcacaa cttgtcttta cataggagag taacttcttc tattacgagg atgagattca      5100
     atcacggtag cttcccttca catttattcc gtttgcatct taggaataca gacaaatgtg      5160
     actgtaactt ttcagatgtg ggggacatta atcacttgat attcgtctgc cctaggtact      5220
     gtcaatacag agaccaattt ctctcagaac taagaggcac agggtgcctt tcccaataaa      5280
     tatcatcagt cttctagtaa tggcagacag agcggtgctt agaagcctgt caagatttat      5340
     tttagtcagc aatttcaaga tatgaattta aaaaaatcat atagttacaa tcaagagaga      5400
     agagatgact ttgcaactcc cttgcatcac aaactttttg gcatagtcat ttgaaatatg      5460
     cattggtggc gacaggctgg tgtaatatct ccataattct ttgttcaatc agtttaaagt      5520
     gcttttttct ctaataatgt ttagaaactg tcattttatt tacagccgct tggtgatcat      5580
     ggtgctttaa aaaatcaaga tttttttttt tctgctgtta aatgctgaag aacatatttt      5640
     cgatttgtac aattcagaaa tgtatttata tcaaattttg tatttgtaag tggctcaata      5700
     gtatatttat gctaaaggcc aaataaataa                                       5730
//
ID   I-11_AAe    repbase;    DNA;    INV; 5409 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5409
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1366-1366 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..1352
FT                 /product="I-11_AAe_1p"
FT                 /translation="MDGDGEDDGTEKSEPQSRSPRIREYPVGAKGPFIVYF
FT                 RKIAIPLKVLLISSELYSKFTSIKELKKINEFKVRVVLSKREEANEIVKMD
FT                 RFEGVYRVYIPCEDVEVDGVIYDEVLTPEEVMQLGEGRFRNRALPSVPVLD
FT                 CERLTMMNADKSNRVHSNALRITFAGTMIPDFVNVSNVFIPVRVYTPKVML
FT                 CSRCNMFGHTDKYCSNKVKCVKCGQDHESSKCPRNTNTCILCKGSHDSLTT
FT                 CKAYQEVKKQVRNKLVARSKASCAELLKAVNDPAGGARARGGGRPPGHSLR
FT                 QICSPRSKTIVRPVHLRMTFKLKRIAVTDHRESVRLTLWRQIVNPRRLNKR
FT                 KVSLRRQNIFHLCNPQKISQGSRRLTSLRLLSTLFRKF"
FT   CDS           1356..5195
FT                 /product="I-11_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="SHCVVCLASTQHGVSLWNLLPRYYRRSGKLLNLFCPS
FT                 SRHSSNSSAVGMECNNTQRALSFLQWNARSIIRRLPGLNALLAEYEVDVFC
FT                 ICETWLTEANFLNIPGYHILRKDRSEPYGGVLIGVRHGIEFHSLPVTTPCP
FT                 IEVVVCSIKVKDFTCSVLSVYIPPNCSFSAESMRQIINSVPQPCIILGDFN
FT                 AHGVAWGSLRDDGRSKIILDIIDDFRFSILNDGTGTRINLQSNNPSCLDLS
FT                 LCSSSIALNCTWEVVNDPFGSDHLPIVIKYCKSGQVLQDRCSLYDLAKHVD
FT                 WQTFSLKVTELINKTQDNRNLNETYSRFARGITNALRNSQTKPVPTVHTFK
FT                 RSPTIWWDEECTNALQAKSRMFKTFRRTGYREDFIEYKRLEALFVRITKKK
FT                 KRGYWKSFVENLDKDTALATLWSTARKLRNSSYCSSSVDSYSEEWVSRFAQ
FT                 KICPDFVAPENEYISAIDTGTSVDTTAAPFTIEEFEFALGSSNNTCPGLDG
FT                 IKFTVLRKLPLIAKTFLLDLFNKFVAYNVCPDEWREVKVVGILKPSKDPSS
FT                 EDSYRPICLLPCPRKLLEKMILNRLEPLLEKSGVLSKTQYGFRRGRGTRDC
FT                 LALLATNVQIAFNKKEELAAVFLDISGAYDSVLIDKLCSKLHFLGVSSLIS
FT                 NFLLNLLSKKKLSFYLNNVFKTSRDSFYGLPQGSCLSPFLFNVYTNDMDDC
FT                 LADKCFLVQYADDSVIWVAGKDKIVMQTSLQQTIDNLILWGDSHGFSFSND
FT                 KTEIMIFSRKRSPTSIKVFLYDTEVKLVFESKYLGVWFDPKMTWKMHIHYI
FT                 VKKCQKRVNFLRTITGTWWGAHPKLLLTLYKTTILSVLEYGSFVFDQAAKT
FT                 HMLKLCRLQNRCIRISLGLMQSTHVQSLEVLAGVPPLPLRFFELGCRFVIQ
FT                 SFESKNEVERVLDKLFEINPSSKMLASYRYAITMDMDKTPSHKYFDYAIEI
FT                 HTFPLNVDTSLHAMVRDTPDWLMPKVAASALRVKLKNVKNVQVFYSDGSKS
FT                 GIKAGFGIYHNQKGYSFSLNQPCSVFLSEVLAIFHCCQLIQQNAPSRYFIC
FT                 SDSMSALSALGTNRFDSRASLFILKIKEFVYKLSRIGYTIIFLWVPAHSSI
FT                 HGNEEADALAKEGASNGPLYQREIQASEYFAQIKEKIRLDWQKSWSEDQLG
FT                 RWCFSIFPSVSFKPWFDNLPVTRNFIRNMSRIISNHYGCKSHLFRINILQE
FT                 NKCSCEKDYEDIDHIVWSCERHTAMRNTLINSLSRNNLPIGLPIRDLLGSR
FT                 NIPYLKYVNEFLQTIEQKI"
XX
SQ   Sequence 5409 BP; 1564 A; 1090 C; 1128 G; 1625 T; 2 other;
     attcttcgct catcagttgt tgcaggcaga cgtgtttttt catttctccc gtgttcaata        60
     gtgtgaagcc gttctattgt tagcagacca ttgttggagt tgcatcgatt tcaagctaag       120
     tattgttcga tccatagttg atttgccgag acaacagaga gcctttttta ttagaactat       180
     ttgctaaatt ccgctcctcc atttttgcaa tggacggaga cggggaagat gatggcactg       240
     agaaatctga accacaatca aggtcgccta gaatccggga atatccggta ggcgcaaagg       300
     gccctttcat agtctatttt cgaaagattg ccattccgct caaagttttg ttaatctcgt       360
     ctgaattgta cagtaagttc acctctatca aagaattgaa gaagattaat gagttcaagg       420
     ttagagtcgt tctctcaaaa cgagaggagg ccaacgaaat cgttaaaatg gatcgctttg       480
     agggtgttta cagggtgtac ataccatgtg aagatgtcga agtcgatggc gtcatttatg       540
     acgaagtact cacgcctgag gaagtcatgc agctcggtga aggcaggttc cgtaataggg       600
     ccctsccttc cgtgcctgtt ttggactgtg aacggctcac catgatgaac gctgataaat       660
     ctaacagagt tcactcgaat gcattgagaa tcacatttgc tggaactatg attccagatt       720
     tcgtgaatgt cagcaacgtt ttcattccgg ttcgtgttta cactcccaaa gtcatgctct       780
     gcagtcgctg caacatgttt ggtcatacag ataaatattg ctccaacaag gtaaagtgcg       840
     ttaaatgtgg tcaagatcac gagtcctcca agtgccccag gaatacaaac acatgtattc       900
     tttgcaaagg cagccatgat tctctcacaa cgtgcaaagc ataccaagaa gtgaagaaac       960
     aggttaggaa caaactggtt gctcgcagta aggctagttg tgctgaattg ttaaaagcag      1020
     taaacgatcc ggccgggggg gcccgggcgc gggggggcgg gcgccccccc ggccattccc      1080
     tacgtcaaat atgttcaccc cgctcgaaaa cgattgtgcg tccggttcat ttgagaatga      1140
     ctttcaaact caagcgcatt gcagttacag accaccgaga aagcgtaagg ttaactctgt      1200
     ggcgacaaat agtaaatcca cgtcgtctga acaagcggaa ggtttcgctt cgtcgtcaaa      1260
     acattttcca cctctgcaac ccacaaaaga tatcccaggg ttcaagaaga ttgaccagcc      1320
     tgaggttgtt gtcgactctg tttcggaaat tttgaagtca ttgtgtggtc tgtttggcgt      1380
     caacccaaca tggtgtaagc ttgtggaatc tgttgccccg gtattatcga agatctggga      1440
     agctcttaaa tctcttctgc ccctcctctc gccactcctc gaattcttcc gctgtaggaa      1500
     tggagtgtaa taatactcag cgcgcgttat cgtttcttca gtggaatgct agaagtatca      1560
     tccgaaggct acctggctta aatgctttgt tagctgagta cgaagttgac gtattttgca      1620
     tttgtgagac atggttgact gaggctaatt tcttgaatat tcctggttat catattcttc      1680
     gtaaagatcg ttctgagccg tacggtggag ttttaatcgg cgttcgtcac ggtattgagt      1740
     ttcattccct ccctgttacc accccttgtc caatcgaagt cgtcgtttgc tcaatcaaag      1800
     tgaaagattt tacatgctcc gttctatctg tctatattcc tccgaattgc agtttcagtg      1860
     cagaatcaat gagacaaatt attaattctg taccgcaacc atgcataatc ctgggcgatt      1920
     ttaacgccca tggagttgcg tggggatcgt taagagatga tggtaggtca aagattattt      1980
     tggacataat cgacgatttt cgcttcagca ttttgaatga cggcactggc actcgtatca      2040
     atcttcaatc aaataaccca tcttgtttgg atctttcact atgttcatcc tcaatcgctc      2100
     taaattgcac gtgggaagtc gtaaatgatc cgtttggtag tgatcatcta cctatcgtaa      2160
     tcaaatactg taaatcaggg caggtactac aggatcggtg ctcattgtat gatttagcaa      2220
     aacacgttga ttggcaaaca ttctcgctca aagtcactga attgattaat aagacccaag      2280
     ataatagaaa tctcaatgaa acttatagta gatttgctcg aggcataact aacgcgctcc      2340
     gtaactctca aacgaagcca gttccaactg tacacacatt caaaagatct cctacaatat      2400
     ggtgggacga agaatgtact aacgctttgc aggccaaatc tagaatgttt aaaacatttc      2460
     gtcgaactgg ttacagagaa gattttatcg agtataaacg gttggaagct ctatttgtaa      2520
     gaattacgaa aaagaaaaag cgtggatatt ggaagtcttt tgttgaaaac ttagataaag      2580
     atactgcctt agcaacattg tggtcgactg ctcgtaagct tagaaatagt agctactgct      2640
     cttcttctgt agacagttac tcagaagaat gggtgtcacg ttttgctcaa aaaatttgcc      2700
     ccgatttcgt cgcacctgaa aatgaataca tcagtgcgat tgacactgga acttctgtag      2760
     atacgactgc cgcgccgttt acgattgaag aatttgagtt tgcactagga tcatcgaaca      2820
     atacttgccc tggattagat ggtataaagt tcaccgtttt gcgaaaactg ccgttgatag      2880
     cgaagacatt cttacttgat ttattcaaca aattcgttgc ctataatgtg tgcccagatg      2940
     aatggcgtga agtcaaagtt gttggaattc tgaagcctag caaagatcca tcttccgaag      3000
     attcttatcg cccgatttgt ttgttgccat gtccaaggaa attactggag aaaatgattt      3060
     tgaatcgctt agaacctttg ttagaaaaat caggtgtact ctctaaaact caatatggat      3120
     ttcggcgtgg tagaggaacc cgagactgcc ttgctcttct agcaacaaac gttcaaattg      3180
     cgttcaataa gaaagaagaa ttagccgcgg tcttcctcga catttctggc gcttatgatt      3240
     cggtactgat cgacaagctt tgttccaaat tgcattttct tggggtttct tcgctgattt      3300
     caaatttttt gctcaatctt ctctcaaaaa agaaattgtc attttatttg aacaacgtct      3360
     tcaaaacatc aagagatagc ttctatggtt tgccgcaggg atcatgcttg agcccgtttc      3420
     tgttcaacgt atacacaaat gacatggacg attgtttagc agataaatgc tttctcgtgc      3480
     agtacgccga tgatagtgtc atttgggtag ctgggaagga taagatagtc atgcaaacct      3540
     cacttcagca aactatagat aatttaattc tctggggtga ttcgcacggt ttctcgtttt      3600
     caaacgacaa aacggaaata atgatatttt cacgaaaacg ttcaccaaca agcataaaag      3660
     ttttcctgta cgacacagaa gtgaagctag tgtttgaatc taaatatctc ggcgtctggt      3720
     ttgatcctaa aatgacctgg aagatgcata tccattacat agtgaaaaaa tgtcaaaaac      3780
     gggttaattt tctaagaacc ataacgggaa cttggtgggg tgcccatcct aaacttctgt      3840
     tgacacttta taagactaca atattatctg tacttgagta cggtagcttt gttttcgacc      3900
     aagctgcaaa gactcacatg ttgaagttgt gtagacttca gaaccgctgt atcagaattt      3960
     ctctaggctt gatgcaatca actcatgtcc agtcgttaga agttctagcc ggagtccctc      4020
     cgcttccgct tagatttttt gaattaggtt gtcgatttgt tatccaaagt ttcgaaagta      4080
     aaaatgaagt tgaacgtgtt cttgacaaat tgtttgaaat aaatccttca agcaaaatgc      4140
     tcgcatcata tagatatgct attactatgg acatggacaa aacgccttca cataagtatt      4200
     ttgattacgc gatcgaaatt cacacttttc ctctaaacgt tgatacatct ttacatgcaa      4260
     tggtacgtga tacacccgat tggttgatgc ctaaagtcgc ggcctctgcg ctacgagtca      4320
     agctaaaaaa cgtgaaaaat gttcaagtct tctattcgga tggttctaaa tcaggaatca      4380
     aagccggttt tggaatttac cataatcaaa aaggatattc gttcagtttg aaccagccat      4440
     gttcggtgtt cttatccgaa gtactagcga tttttcactg ttgtcagctg attcagcaga      4500
     atgcgccttc taggtacttc atttgttcag atagtatgag tgcgttaagc gcactcggta      4560
     ctaatcgttt tgatagtagg gcgtcccttt ttattttgaa aatcaaagaa tttgtctaca      4620
     aactatctcg catagggtac acaatcatat ttttgtgggt tccagcacac agttccatac      4680
     atggaaatga agaagctgat gcacttgcaa aagaaggcgc ttcaaatgga ccgttatacc      4740
     agagagaaat ccaagcatcg gagtatttcg cacaaattaa agaaaaaata cgtttagact      4800
     ggcaaaaatc ttggagtgaa gatcaattag gaagatggtg cttctctatt tttccatcag      4860
     tttcgttcaa gccatggttc gacaatcttc ccgtaactag aaattttata cgaaacatgt      4920
     ctcgcattat ctccaaccat tacggatgca aatcacatct ttttcgtatt aatattctac      4980
     aggaaaacaa atgctcgtgc gaaaaagact acgaagacat agaccacata gtttggtcct      5040
     gcgaacgtca tactgctatg agaaatacgc ttatcaacag tctatcgagg aacaatttgc      5100
     ctattggatt gccgattcga gacctgctag gatcccggaa cataccgtat ttgaaatatg      5160
     tgaacgagtt tcttcaaact attgaacaaa agatttgatt ctcatattga tcaaatgatc      5220
     aacgctgtta taatctattc taatattcca ctcgttttct aaacttacta ctttttccat      5280
     aatcaataaa tattttatga agcacggctt tgtgatggtg ctaattgtcg ccgaatgagc      5340
     cagttagatt aaggtttatg wttgtatatg taatgttttg ttttgtttca ataaaaaaaa      5400
     aaaaaaaaa                                                              5409
//
ID   I-11_LMi    repbase;    DNA;    INV; 5530 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5530
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3144-3144 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(105..1205,1049..1651,1659..3386,3313..4155,
FT                 3927..4697)
FT                 /product="I-11_LMi_1p"
FT                 /translation="MDSGEYGEGGQNKLSENLKTLATVANVVQALHNADLA
FT                 MEVQDIVSSRKRQAEITNSKPDKRTASATSISSDENIINNVGCSQVSDNKL
FT                 HYPKTRLYRENDVGPYSLYIESSTNDVGRLHPMSVGKMIHNSYPEKKGQIL
FT                 NITQIGRNRIKIDASNPDMANLLLKSPLWSSKNMNPFIPSHLIYKQGVIRD
FT                 VFVELSEEEILQEISSPAEVINVKRMTKKVISDNKETIVKLQTCVLTFDSQ
FT                 TLPQYVYLHGTRCEVELCIPSVKQCFNCLRFGHIGKQCRSQNRCKRCGGHH
FT                 SHLQCTSTTVKCIYCHEPHEATDRICTSIYSGNRSTYLLHKIPSPTESQRT
FT                 SFDTIPFQVSHKDIHLLLRKQKVLQDMHKYLFRKQVNVFATQNSISYRESE
FT                 NFLRHHSFSGVTQGYSPSFKETKSAVVDTSNLAEFPLIKASSSGKTTEVKD
FT                 HSLNGQQTNSHYIPNFYQKFNRTKRHNAKSVYNVSEFNTKSYRQTMQNVRF
FT                 DPRGLTGNHIEFNPFRPQQIPQEDKETESTNSLSDKIFHLILSIIDQLQKN
FT                 EPVDTQTVKTRLLELLPKPRSYPSSKIGNLRILQWNARSVLSNKISLENEL
FT                 YQQKIMVACISETWFKSDISIAFKGYNLIRSDRLDGKGGVAILVHKSMPFS
FT                 NIDIQLINDNLQAVAIKIFLSSSTYCIMSVYNLPRNKIEPDIWSKVFQQLT
FT                 TPVIICGDFNCHSISWGNEFTDREGAALLTAIEDNQLIILNDGSPTLIPHP
FT                 FHRPSAVDLTLCSPQVANISHWEILSDSLGSNHLPILLIVNDNILPQKRQI
FT                 KSGWNIKXAQWDVYKAYLLQNTLNLGEPSNVRKLYEDLRNAILDAADKSIP
FT                 RKKSVDLNKRPPSNWWSPDCSKAIARRRLALHSYRRNPSLDNYLKLCKTQA
FT                 QSKKFLKQQKKAHWRTFCENMNKQTNISEVWQCVKKLRNRFSPVINSCIQL
FT                 DVSCVEAFMDRLCPPSVPLPITIPSVEYSAHFLCQPFQYAELQKVLKEASD
FT                 TAPGIDSIHYSMLQNMPTITQMRLLSIYNRIWMKEELMSEWTTQIIIPVAK
FT                 PNANPFDEKSFRPIALSSCISKTLEHMIKNRLEWWLESRNLLPKPQFGFRK
FT                 GKGTLDNLSILTTEIQTVYKKKQILSALFADNLWSLLQKFKQFIKRSKYFQ
FT                 LFSQIISGAYDNVLILVLFQKLLNLGIPSSFVSGIKSFLIERKIFVRHNYK
FT                 LYGPRTIYDKGLPQGAILSPLLYIIYTSDLEYIFSPRIKTLQYADDICIYA
FT                 IDKRLHTVEYLLDQAVTAFTQWLDEHGLTLSENKSTVVHFTKQRIQGRADF
FT                 IQLGEREFPVKPSVKFLGMILDMRCTWNNHIAYITNKIEKSMNVMRSVAGT
FT                 WWGAHPSVLLILYRSLIRSVLDYGSFLYGIVHEKHWLSLTAYSIDVSGYVW
FT                 EPCDLHPPMHCNRKIHECYEISCWHLVGSPSLCVTDIIQISNKISFGLWKF
FT                 PVWHSSRKTLAKLDSLQYRCLRICLGAMRSTPTNALLAEAVEMPLSIRRRH
FT                 LASRFLLRKIQDSAHILHSHLTQLQTMFPENNVNENQLPLLVLATNTIREI
FT                 QYHIMPNVIGIPFQFPFSRQFSKITVHYCNLMRNSTHNWNNVVMHWISEVS
FT                 SKALLIFTDGSKLGTNGPVGCAFLCPQLSQYKQYVLPTFFSIYSAEAIAIK
FT                 EAIKLEDRQDIEI"
XX
SQ   Sequence 5530 BP; 1944 A; 1028 C; 938 G; 1616 T; 4 other;
     tctttggtta agctcgttgg tttgacgtat gtgtgattat tagttcttaa aaaagtgaat        60
     aatttatttt attcccttta aaagtataat ttgaattctg tgctatggat agcggggaat       120
     acggagaggg aggtcagaac aaactctctg aaaatctaaa aacattggca actgtcgcca       180
     atgtggtaca ggcattacac aatgcagatc tcgccatgga agtgcaagac attgtttcat       240
     ccaggaaaag acaagcagaa attacaaaca gcaaacctga caaacgtaca gcatcggcga       300
     cttcaatcag ctcggatgag aacataatta acaatgtggg ctgctcacag gttagtgaca       360
     ataagttaca ttatcctaaa accagactgt acagagaaaa cgacgttgga ccttactcac       420
     tctatattga aagttcaaca aatgacgttg gtcgcttaca tcctatgtct gtaggaaaaa       480
     tgattcacaa cagctatcca gaaaagaaag gccaaatttt aaatattacg caaataggtc       540
     gcaacagaat aaaaattgat gctagtaatc cagacatggc aaatttatta cttaaatctc       600
     cactctggtc atccaaaaat atgaatccgt ttattccgtc acatttaata tacaaacaag       660
     gagtgattcg tgatgttttc gttgaattgt cagaagaaga aatcttacaa gagatctcat       720
     caccagcaga agtcattaat gttaaaagaa tgacaaaaaa ggttattagt gataacaaag       780
     aaacgatagt taagcttcaa acatgtgtct taacttttga ttctcagaca ctcccacaat       840
     atgtatattt acatggtaca agatgtgagg tagaattatg catcccttct gttaaacaat       900
     gttttaattg tcttcgattc ggtcatatag gaaaacaatg tagaagtcag aatcgatgca       960
     aaagatgtgg gggacaccac tctcacttgc aatgcactag cacaacagtc aaatgcatat      1020
     attgccatga accacatgaa gctactgaca ggatatgcac aagtatttat tcaggaaaca      1080
     ggtcaacgta tttgctacac aaaattccat ctcctaccga gagtcagaga acttccttcg      1140
     acaccattcc ttttcaggtg tcacacaagg atattcacct tcttttaagg aaacaaaaag      1200
     tgctgtagta gacacttcta atcttgctga gtttcctcta attaaagcta gttcatcagg      1260
     caaaactact gaagtcaaag atcactcatt aaatgggcaa caaacgaaca gccattacat      1320
     tcccaacttt tatcagaaat ttaaccggac aaaaagacat aatgccaaat ccgtctataa      1380
     tgtatcagaa tttaacacaa aatcgtacag acaaacaatg caaaacgtaa gatttgaccc      1440
     aagaggttta acgggaaatc acattgaatt taatccattc cgaccgcaac agatccctca      1500
     agaagataag gaaactgaat caactaacag tttatcagac aaaatatttc atttaattct      1560
     ttctattata gatcaattgc aaaaaaatga accagtggat actcaaacag tcaaaaccag      1620
     gcttctggaa ctgctgccca aaccaagaag ttaattgata tccctcatcc aaaataggga      1680
     atttaaggat tttacaatgg aatgcaagat ctgttttatc taacaaaatt agcctggaaa      1740
     atgaactata ccaacagaag ataatggttg cttgcatatc agaaacatgg tttaaatctg      1800
     atatatctat agctttcaag ggctacaatt taataagatc tgatagattg gatggaaaag      1860
     gtggtgttgc aattttggtt cacaagagta tgccgttttc taatattgat attcagttaa      1920
     ttaatgacaa tcttcaagca gtagccatca aaatctttct cagttcatct acttattgca      1980
     taatgtcagt gtataatctg ccaagaaata aaatagagcc tgatatttgg agcaaagtct      2040
     ttcagcaatt aactactcca gttattatat gtggagattt taattgccac agcataagtt      2100
     ggggcaacga attcacagat agagaaggag ctgctttgtt aactgcgata gaagataatc      2160
     agttaatcat attgaatgat ggttctccca cattaatacc ccaccccttt catcgaccat      2220
     ctgcagtgga cttaacttta tgttctcctc aagttgccaa catttcacac tgggaaattc      2280
     tatcagattc tttaggttca aaccatctac ctattttgct gatcgtcaac gacaatatct      2340
     taccacagaa aagacagata aaaagtggtt ggaatattaa aamagcacag tgggatgttt      2400
     ataaggccta tctgctacaa aacaccttga accttggcga accatcaaat gtgagaaagt      2460
     tatatgaaga tttacgaaat gctatcttgg atgcagcaga caaatcaata ccaagaaaaa      2520
     agtcagtaga tttaaataaa agacctcctt caaattggtg gtctccagac tgctctaaag      2580
     caatcgccag acgaagactt gcacttcatt catacaggag gaatccatca ttagataact      2640
     atcttaaact ttgtaaaacg caggcacaat ctaaaaaatt tctaaaacaa caaaaaaagg      2700
     ctcattggcg aactttttgt gagaatatga ataaacaaac gaatatatca gaagtttggc      2760
     agtgtgtcaa gaaactaaga aacagatttt cgccagtaat aaactcctgt atacagttgg      2820
     atgtctcttg tgtagaagct ttcatggata gattatgtcc accatcagta ccccttccaa      2880
     tcacaattcc atcggtggag tactcagcac actttttatg tcagccattt caatatgcag      2940
     aactacaaaa agtcctaaaa gaagcttctg atactgctcc tggaatagat tcaatccatt      3000
     actcaatgtt acaaaacatg cctacaataa ctcaaatgcg tttattaagc atttataata      3060
     gaatatggat gaaggaagaa ttgatgtctg agtggacaac tcagattatt attcctgttg      3120
     caaagcctaa cgccaatcct tttgacgaaa aaagcttcag accaattgca ttatcatctt      3180
     gcattagtaa aacacttgaa catatgatta aaaatagact ggaatggtgg cttgaatcta      3240
     gaaatttact cccaaaacca caatttggtt ttcgcaaggg aaaaggaacg cttgataatc      3300
     tctcaatttt aactacagaa attcaaacag tttataaaaa gaagcaaata ctttcagctc      3360
     ttttcgcaga taatctctgg agcttatgat aatgtgttaa tmctggttct ctttcagaaa      3420
     ttattaaatt tgggtattcc gtctagcttt gtgtcaggaa tcaaatcatt tttaattgaa      3480
     cgtaaaatat ttgttcggca taattataaa ttatatggcc caagaactat atacgataaa      3540
     ggcctaccac agggagctat tttaagccct ttactttaca ttatctacac atcagacctg      3600
     gaatatatct tttctccacg aatcaaaact cttcagtatg ctgatgacat atgtatatat      3660
     gctatagaca aaagattaca tacagtggag tatttattag atcaagcagt cacagcattc      3720
     acacagtggc ttgatgaaca tggccttaca ttatcagaaa ataagtccac agtggttcac      3780
     tttacaaaac aaagaattca aggtagagcc gatttcattc aattgggaga aagagaattt      3840
     ccagtcaaac catcagtaaa gtttttgggc atgattttag acatgcgttg cacttggaat      3900
     aatcacatag cgtatattac aaataaaata gaaaaatcca tgaatgttat gagatcagtt      3960
     gctggcactt ggtggggagc ccatccctct gtgttactga tattatacag atctctaata      4020
     agatcagttt tggactatgg aagtttcctg tatggcatag ttcacgaaaa acactggcta      4080
     agcttgacag cctacagtat agatgtctca ggatatgttt gggagccatg cgatctacac      4140
     ccaccaatgc attgttagct gaagcagtgg agatgccttt atcaatacga agacgtcatt      4200
     tagcaagcag attccttcta aggaagatac aagactcagc acatatttta catagtcacc      4260
     ttactcaact gcaaacaatg tttcctgaga acaatgtaaa tgaaaatcag cttcctttac      4320
     tggtattagc aacgaacacc attcgtgaga tccagtacca cattatgcca aatgtcattg      4380
     gtattccatt tcagtttccc ttcagtcgcc aatttagcaa aattacagtt cattattgta      4440
     acttgatgag gaactccaca cataattgga acaacgtcgt catgcactgg atatctgaag      4500
     tatcatcaaa ggcattatta atatttacag atggttcaaa attaggtacc aatggaccag      4560
     ttggatgtgc cttcttatgc ccccaacttt ctcaatacaa gcagtatgtt cttccaacat      4620
     tcttctccat atactcggca gaggcaatag ccatcaaaga agcaataaaa ttggaagaca      4680
     gacaggacat cgaaatatag cgataataac tgattctaaa agtgttatac aaactattga      4740
     acatcgaaaa tggaacttga cacaaatata tatatagcag aaattgttga cttagtggca      4800
     caaagcaatg actcaggaac agtcttttct ttcatatgga ttcctgctct tcggctatca      4860
     catacaatgg acaagtgacc agttagcgaa atctgcagtc agaactgggt tacacttcat      4920
     gctcamgttc ctccatcaga tcttaatcca tggatcaaaa gaaaaataaa tatatactgg      4980
     aaagaatact ggaaatcatc ttcatcagtt aaggccaaat ggtatgcatc aatacaaaga      5040
     tcaataccgc agaaaccttg gttccatgat aaaaaggtca caagaaaatt aattacaagt      5100
     gtaattcgga tgcggtttaa tcatggttgt tttccagccc atctacataa gataggcatc      5160
     caaaactcgc cttattgtga ctgtgataat tcctcgtatg ctgatctgaa tcacattttt      5220
     ttcaattgtt ctaaattcac aatgtataga cagaacttta tggaagacct aagaaaagct      5280
     aatgtgcatt ttccttgtgg atttccgagt attctatatg acaacaacat atgcgtctat      5340
     aaaacaatat ttaaattcat gtcatctgct caaattgtta tataatttaa ttgcaaacca      5400
     tmaaaattag tgttttaaga gattacttgt tgtaaatatt agccatgtaa gatatgtgta      5460
     aattgtatgg ctgtatgttt cttttttttt tttttttttt ccaaatgcca aataaaaaaa      5520
     agaatttaaa                                                             5530
//
ID   I-12_AAe    repbase;    DNA;    INV; 5409 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5409
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1367-1367 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1547
FT                 /product="I-12_AAe_1p"
FT                 /translation="METDIKDPPDLANPEHSPRARAYPVTAKPPYVVFFRQ
FT                 IEKPLDITTISNDLHKHYRSIQQTRKITMRKIRVVVSERNDANDIVKNRLF
FT                 KQYRVYIPSEEVEIDGVISDSTLSGQYLLENGVGKFRNPNAPSVNVLEVNQ
FT                 LVVPRKEGEDVVYDPSYSFRITFEGTALPDFVEIDHVLIPVRLYVPKVLMC
FT                 TNCKRYGHSAKMCDNKARCGKCAEIHDESTCSFVSPLCIRCNAEHDPSPKS
FT                 CPSYQDHVNMTRRKLLEKSRLSFAELLSTADQETVVLDNLFSPLADLPADD
FT                 LDDDENGNCSYTYVYPKRKKKTANIKRRSENMPPQNQAPQIALTSDQLTSQ
FT                 QSSPNTSKQNKTQQFYRLSQKVPQQTVGATFSIHDKKQFPPLPATQDKPAG
FT                 SSPDQSILSIPQLIRMMCAVFRVSNVWMSVVESLMPLFSLIWEKIIAHMPL
FT                 LAFIAANDA"
FT   CDS           1540..5232
FT                 /product="I-12_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MMPSATPQQLSLLQWNAHSILPKIANFRSLINLNQVQ
FT                 IFAISETWLTEEKDFYVPQFNILRSDRDQPYGGVLLGLKHGIEFKRVEIEQ
FT                 PSPIEIVAATINVTSTELTIASIYIPPTINLRYTDLKRIVDTLPAPLMLLG
FT                 DFNSKGCAWGEQIDDSRAKIIYDLTDEFDLVILNTGEITRIACPTQSCSRL
FT                 DLSICSSRIALNCSWKVIDDPSGSDHLPIIVSLQSNTPESASTTNYDLTKH
FT                 IDWNRYRGQLDSIVTEINHSEDPIETHAFLIDSIKQSAIASQTKPIPNGGN
FT                 VRKNPTIWWDWECSKMLTKRSDAFKTFRSSGSTEDFLKYKKAEAESKRLFK
FT                 IKKRGYWKKLIESFDKDTALGSLWAIAKKMRNSSTPRENLNSYSEEWIEQF
FT                 SRKICPQFAPNSKPEIQNSSLGDGNCDLTKDFSLEELESALCLAENNAPGM
FT                 DGIKFALLKNMPLNAKKLLLNLYNAFFKFNVCPSTWYELKVLPILKPGKSA
FT                 SEHESYRPISLLVCDRKAFEKMILVRIEHWAEKQKVLSPSQYGFRRARGTR
FT                 ECLGKFSTAIQLAFAKKENLTAVFLDISGAFDSIRIDLLYQKLVSIGLPRQ
FT                 MSDFLFTLLKFKTMHFIINGCIRETRIGYVGVPQGSCLSPLLYNIYVNDVD
FT                 SCITEDCELIQFADDAVIWISEKDEEIARTHIQSSIRNLERWSADNGLTFS
FT                 SSKTEMMIFSKKHKLPEMKLMLDQNEIKAVESHKYLGIWFDRKCLWGGQIR
FT                 DIVRKCQKRINFLKTICSTWWGAHPSDMITLYKTTILSVMEYGSITFCSAS
FT                 KTHILKLERIQYRAIRICLGSMMSTHTSSLEIMAGIKPLKLRYEELNLRFV
FT                 LKNISSDNQFKKDLAILKNLKPQNYLVSYFNTISEMNATTSTHSCSSHLKI
FT                 DDFLFVPQIDFSLHSELENSSEICRKSLANSLFRNKSENVPPENMFFTDGS
FT                 KSYETVGFGLHSETVSLSYKLESPASIFCAESTAIYKACTLIDELPIGLYM
FT                 ICSDSMSTLKALSSRVLDKNSNSTVLMVKQILRKLHSNGYTIRFLWVPAHC
FT                 GIHGNESADDLAKTGALTGEVFERNIQYDEYLPTIKSYMQTRWQQKWTEDE
FT                 LGRFCYSILPNVSNKPWFIEYDFSRNLIKNMSRLIANHFCLSSHLFRIGIK
FT                 QSNICDCGDGYEDFDHILWHCQRYNEHRRKMLDELQKHGHATPCSIRDILG
FT                 TLNNQILICVNNFINEAKIVL"
XX
SQ   Sequence 5409 BP; 1748 A; 1116 C; 1063 G; 1482 T; 0 other;
     cattccacgt ttagcttttg acgagaacgg tcgtgttggc aaagcagtgt tcgattgtgg        60
     tatagaaagt gaagcctttt gtttcctccg tcgagtgatc gttgaacaaa gctaagtacc       120
     attgtttctt tcctatcgag aatttgtagc gtgtgtgagc cagtgaccgc aagtccgttg       180
     cggctatgga gacggacata aaagatcctc ctgacttggc aaatccagaa cattcaccga       240
     gagccagagc ataccctgtt acagctaagc ctccatatgt agtgttcttc cggcaaatcg       300
     aaaaaccatt agacatcaca acaatctcca atgacctcca taagcattac cgctctatac       360
     agcagactcg taaaattacc atgaggaaaa ttcgggtagt cgtgtcagaa cgtaacgatg       420
     ccaacgacat agtaaagaat cgcttattca agcagtatag agtgtacatc cctagcgaag       480
     aagttgagat agacggtgtt atctccgatt ccaccttgag cggccagtac ctattagaaa       540
     atggagtcgg aaagttcaga aatcccaatg ctccatcggt gaatgttctg gaggtcaacc       600
     aactagtcgt ccctcgcaaa gaaggtgaag atgtcgtata tgatccgagt tactcttttc       660
     gcattacttt tgaaggaacg gcccttccag attttgttga aatcgatcac gtgttgatcc       720
     ccgttcgatt atatgttcct aaagtgttga tgtgtacgaa ttgcaaacga tatggtcact       780
     cggctaaaat gtgcgataac aaagcacgtt gtggcaaatg tgctgaaatt catgacgaat       840
     caacgtgctc tttcgtgtct cctttgtgca ttcggtgcaa tgcggagcat gatccatccc       900
     cgaagagttg tccctcttat caagaccacg ttaacatgac ccggcgaaaa ttattggaaa       960
     agtccagact ttcattcgct gaactgcttt ccaccgcgga tcaagaaaca gttgtcttag      1020
     acaatttgtt ctctccactt gcagaccttc cagccgatga tctcgatgat gacgagaatg      1080
     gcaactgcag ctacacctac gtctatccaa aacgaaagaa aaagaccgct aatatcaaaa      1140
     gaagatccga aaacatgcct ccccaaaacc aagctcctca gatcgcgtta acatcagatc      1200
     agttaacctc acaacagtcg tctccaaaca cgtctaagca aaacaaaaca caacagttct      1260
     atagactctc tcaaaaagtc cctcagcaaa ccgtcggcgc gacttttagc attcacgaca      1320
     agaaacagtt tcctccgctc ccagctacac aagataaacc tgcaggtagc agtccagatc      1380
     agtccatttt gtccatacca cagttgattc gtatgatgtg cgcagtattc cgtgtctcca      1440
     atgtgtggat gtccgttgtt gaaagcctga tgcccctgtt cagcttaatc tgggaaaaga      1500
     taatcgccca tatgcccctc cttgctttca ttgctgctaa tgatgcctag tgctactccg      1560
     caacaactaa gcttacttca atggaatgct catagtattc tcccaaaaat agcaaacttc      1620
     agatccttaa tcaatttaaa tcaagttcaa atattcgcaa tatcagagac atggttgaca      1680
     gaagagaaag atttttatgt accacagttc aatatactta gaagcgacag agaccagccg      1740
     tatggcggag tcttgcttgg tttgaagcac gggattgaat ttaaacgagt tgagattgaa      1800
     caaccctccc ctatcgagat agtggccgct actattaatg tcacatcaac agagttaacc      1860
     attgcctcca tctatattcc tcccactatc aacttaagat acacagatct taagcgtatt      1920
     gtagatacac ttcctgcgcc tctgatgctc ttaggtgact ttaattcgaa aggatgcgca      1980
     tggggtgagc aaatagatga tagtagagca aagattattt acgatttaac tgatgaattt      2040
     gatcttgtaa ttttgaacac tggtgaaata actagaatag cgtgtcccac tcagtcatgt      2100
     agtagactag atttgtcaat ttgttcatca agaatagcgt taaactgttc atggaaagta      2160
     atcgatgatc catcaggaag cgatcatctt ccgataatcg tatcacttca atctaacact      2220
     ccagaatcag cttcaacaac taactatgat ttaaccaaac acatagactg gaataggtat      2280
     agaggacaat tagattcgat cgtcaccgaa attaatcact ccgaggatcc gatagagaca      2340
     cacgcatttt tgatcgattc cataaaacaa agtgcaattg cgagtcaaac gaaaccaatc      2400
     cctaacggag gcaatgttcg gaagaatcct acaatatggt gggattggga atgctccaaa      2460
     atgttgacaa aacggtcaga tgcattcaaa acgtttagat catcggggag taccgaggac      2520
     tttcttaaat ataaaaaagc cgaggcggaa tctaaaagat tattcaagat taaaaaacgt      2580
     gggtactgga aaaaactcat tgaatcgttt gataaagaca ccgctcttgg gtcattgtgg      2640
     gctattgcca aaaaaatgcg aaacagtagt acacctaggg aaaatttaaa tagttactct      2700
     gaagaatgga tcgaacagtt cagcagaaaa atttgccctc aattcgcccc aaattcgaag      2760
     cccgagattc agaactcttc attaggagat ggcaactgtg atttaacgaa ggatttcagt      2820
     ttggaagaac tggaatcagc attgtgtctg gcagagaata acgctccggg aatggatggt      2880
     atcaagtttg ctttactgaa gaacatgcca ctcaacgcga aaaaactttt attgaatctt      2940
     tacaatgcct ttttcaaatt taatgtttgt cctagtacgt ggtacgaact aaaagtcctc      3000
     cctatattga aaccaggaaa aagtgcttcc gaacatgaat cttatcggcc aatttcactt      3060
     ttagtatgcg acagaaaagc ctttgaaaaa atgatcttgg ttcgtataga acattgggca      3120
     gagaaacaaa aagtgttatc tccttctcag tacggtttta gacgtgctcg tggaacgcgt      3180
     gaatgcctgg gaaaattttc tactgcgatt caactagcat ttgccaaaaa agaaaatttg      3240
     accgctgtgt ttttggacat ttcaggagcc tttgattcta tacgtattga tcttctatac      3300
     caaaaactgg tttccatagg actcccaagg cagatgagcg actttctttt tacgctgttg      3360
     aagtttaaaa ctatgcactt cataataaac ggatgtatta gagaaacccg gattggatac      3420
     gttggagtcc ctcaaggctc atgcttgtcc cccctactct ataatatata cgtgaacgat      3480
     gtcgattctt gtatcacgga ggattgtgag ctgatacagt ttgctgatga tgctgtaata      3540
     tggatttccg aaaaagacga agaaatagca agaactcaca ttcaaagctc aatccgaaat      3600
     cttgagagat ggtcagctga caatggttta accttttcca gtagtaaaac cgaaatgatg      3660
     atattctcga aaaagcataa gctgccagaa atgaaattaa tgttggatca aaacgagatc      3720
     aaagcggtag aatcacacaa atatttggga atttggtttg atcggaaatg cttatggggt      3780
     ggtcaaatta gagatattgt tagaaaatgc cagaaaagga taaacttctt gaaaactatc      3840
     tgcagtacgt ggtggggagc ccacccttca gatatgatca cgctgtacaa aacaaccata      3900
     ttgtccgtga tggaatatgg tagcattaca ttctgcagcg cttccaaaac acatattctc      3960
     aaattagaac gcattcaata tcgagctata aggatctgct taggaagtat gatgtcaacc      4020
     catacttcat ctttggaaat catggctgga attaaacctt tgaagctaag gtatgaggaa      4080
     ttgaatttaa gatttgttct gaaaaacata tcctcagaca accaatttaa aaaggacctt      4140
     gccattttga aaaatctcaa gccacagaat tacctcgttt cgtacttcaa caccatcagt      4200
     gagatgaatg ctacaacaag cacacattca tgctcatcac atctcaaaat agatgacttc      4260
     ctatttgtac ctcaaattga cttctcttta cattcagagc tagagaacag ttctgaaata      4320
     tgccgcaaaa gcttggctaa tagtttattc cggaacaagt ccgaaaacgt accacctgag      4380
     aacatgtttt tcaccgatgg atcgaaatct tacgaaaccg taggttttgg attgcacagc      4440
     gaaaccgtta gcttgagtta caaacttgaa tctcctgcat cgatcttctg cgcagaatca      4500
     actgcaattt acaaagcatg caccctaata gatgaacttc ctataggact ctatatgatc      4560
     tgctccgata gtatgagtac acttaaagcg ctttcttcgc gtgttcttga caaaaactca      4620
     aacagtactg tgttgatggt gaaacaaatt ctgagaaagc tacactctaa cggatacaca      4680
     atacggtttt tgtgggtccc ggcccattgt ggtattcatg gcaatgagtc cgcagatgat      4740
     cttgcaaaaa caggagcact aacaggagag gtcttcgaac gtaatatcca atatgacgaa      4800
     tacttaccaa caatcaagag ctatatgcaa acaagatggc agcagaaatg gaccgaagat      4860
     gaattaggca gattttgtta ctcaatatta ccaaatgtca gcaataagcc gtggtttatc      4920
     gaatacgatt ttagtagaaa cctaattaaa aatatgagtc gattgattgc taatcatttt      4980
     tgcctttctt ctcatctttt ccgcatagga attaaacagt caaacatttg cgattgcggg      5040
     gacggatatg aggacttcga tcatattctt tggcattgcc aaagatataa tgagcatcga      5100
     aggaaaatgc tagacgagtt gcagaaacac ggacacgcga caccctgcag tattagggat      5160
     attctgggca cattgaacaa ccagattctg atttgtgtga ataactttat aaacgaagcg      5220
     aaaatagttt tatagagaac cacagaaaaa aaaacgaaac tcttcaatga taatagttaa      5280
     atgctaacac cttcattttt tatatttata tacattttaa ttttaatatt tttgtaatcg      5340
     ctactcggcg ccgttatgct gtaattgctt ttgtgcctaa taaaaaaaaa aaaaaaaaaa      5400
     aaaaaaaaa                                                              5409
//
ID   I-13_AAe    repbase;    DNA;    INV; 5497 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-13_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5497
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1368-1368 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..1658
FT                 /product="I-13_AAe_1p"
FT                 /translation="MVGNEGSSSQMPPIIEEMSSDHPSVADPQLIGTDPQP
FT                 TASRHRCYPASAKGPYEVFLRQKDKPLNVLLISAELYSNFKTVKEVRKIGF
FT                 SKVRVVLTNREEANNVALNERLSRLYRVYVPCNLVEIDGVIQQADMDLSYL
FT                 KDEGVGKFKDPRIPSVPVLECNQLAIASDDENGKSFKPSYSIRVTFEGTIL
FT                 PDFLEIRNVLIPVRIYSPKPMLCNKCKRYGHTEPLCANKARCGKCGKSHHD
FT                 ATCPIQENICLHCKKSHESHRDCSAYKKRAQFATARIWQKSKLSYAETVGN
FT                 LPNSDFCHENPYASLSELSDIDENESVCSRSESLKRKKLTRAKKSKRTKSS
FT                 DHQPDSILSSQNVMNVPTSKSSNHQPCVAPLASRQQHQSVSSHPPFLDFPS
FT                 TSRLSQPSRKPPEFQYKESDFPNLPGVASSTENSSTAVGLTVTQIVKLFSE
FT                 IFQLTPAWTDILLKLTPILNILLKKLISSWPLLGLLVSIDG"
FT   CDS           1654..5325
FT                 /product="I-13_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANSLLNQKFSVFQWNCRSILPKIANLRCFLLKLNVD
FT                 CFALSETFLTPDLNFYLQNYNILRNDRDIRAGGVMLGIKNCYSFRRIDLPN
FT                 VNPIEVVAAEIEIDNMVFSIASLYIPPSARLIPSVLRTLVSKLSHPVFLLG
FT                 DFNSHGCAWGEDRDDSRANMIYDILDEFRLSVLNTGKVTRIACPPSCNSRV
FT                 DLSLCSSNLSLSCVWDVVDDPAGSDHLPIHISFCTNSKRELVVPYDLTKHI
FT                 DWSKYSSTILTEIENVSVQEPDLHGFLTNLILMAAENSQTKPIRSSLSKTK
FT                 APTIWWDQECTDIVKQRSDAFKMFRKFGLMQDFLNYKKLEAKSKMIFKNKK
FT                 RNFWKQFVESLTKDTAMPILWQTARRLRNFNPSPSDIREFDSSWIDRFAEN
FT                 VSPCFVSTQPPLFIENDTVSMDLVEDFSFTDLENALVSCNNSSPGMDGIKF
FT                 SLLKNLPTPAKELLLRSYNWIFKNKSIPVAWRNIKVVAILKAGKDPGISQS
FT                 YRPIGLLSCTRKILEKMILVRLEVWAEKNQLLSPTQYGFRHAKSTRDCQAL
FT                 LATDIQIAFRSKQALTAVFLDIKGAYDSVLIDILCHKLCKLGVPVQLADFL
FT                 FNLLSLKTMHFYQNFQVKHVRNSCLGLTQGSSLSPLLYNLYTSDIDSSIES
FT                 GCVLVQYADDACLWATAKDVKFSEGTLQTSLNNLAIWAQNLGLEFSASKTE
FT                 IVVFSNKRTLSPLQLHLYDLRITQSLCYKYLGLWFDSKCTWRIHVQYVVRK
FT                 CQRRINFLRTIAGTWWGAHPSDMIKLYKTTILSVIEYGSFIFHMTAKSHFI
FT                 KLERIQFKSLRICLGLLNSTHTQSVEVIAGVLPLNIRFLELNCRYLANCHI
FT                 TSSRVMIQLDELFRIHPQSNFLRSYRECLVLPTSPSSDNFYDYEVPARPFE
FT                 IDVNTSLVQNLANLPKPLLPCQAKQAYLENLSNINAEEMFFTDGSLGVDNC
FT                 GFGVYNCNFEASFQLEFPCSIYKAEMLAVKFTVDYIKSLPPKRYLICSDSL
FT                 SSIESLKNIRVSTKTSLIALYIKETVAWLAKRQYTITFMWVPSHCGIEGNE
FT                 FADALAKQGARNGDVYQHCPEARDFYAIIRQTALSSWQDSWSNSELGRYCY
FT                 SILPKVSLSSWFSTLQCNRLFVKNMSRLISNHYTLKASLFRVNIVNSNLCD
FT                 CSLSYEDIDHIIWQCEKFEETRPSLLQQLERENRAPQPIRDVLGNMDILYM
FT                 QIVNNFIKKSKIQL"
XX
SQ   Sequence 5497 BP; 1649 A; 1185 C; 1054 G; 1609 T; 0 other;
     cagtcgctct tcaactctcg atcgaatcgg ttgtgtttag cctttattct gctttcgaac        60
     tccgtgcggt gttattgtgt gaaggtcaat tcgagggact catttcaaag ctaagtatct       120
     attgtgcttt ctattgtcgt gggaacgcat tgtttcgcaa cccattactg gttgcacgag       180
     attggtctcg gtagcaaaat atggttggca atgaggggtc ttcctctcag atgccaccaa       240
     tcatcgaaga aatgtcttcc gatcatccat cagtagccga tcctcaactg attggcacag       300
     accctcagcc tactgcttcc cgccatcgtt gctatccggc atcagcaaaa ggtccatatg       360
     aagtgttcct ccggcaaaaa gataaaccgc ttaacgtgtt gttgatttct gcagagcttt       420
     acagtaattt caagactgta aaggaagtcc gaaagattgg tttcagcaag gtccgcgttg       480
     tgctgaccaa tcgtgaagaa gcaaataatg ttgctcttaa tgaacgtttg tctcgcctct       540
     atcgagtata tgttccatgc aatttagtgg agatcgatgg cgtgattcag caggctgata       600
     tggatctgtc gtaccttaag gatgaaggtg ttggcaaatt caaagaccct cgtatccctt       660
     cggttccagt tttggaatgc aatcagctag ccattgcatc tgatgatgaa aatggaaaat       720
     cgttcaagcc ctcctattct atccgggtga cgttcgaagg aacaatcttg ccggactttc       780
     tcgaaatcag aaatgtcttg atccccgttc gaatctattc tccgaagcct atgctttgca       840
     acaaatgcaa acggtatggc cacacggaac cactctgtgc gaacaaagca cgttgtggga       900
     aatgtggaaa atctcatcac gatgccacat gtccaatcca agaaaacatc tgcctccatt       960
     gtaaaaagag ccatgaatcg caccgcgatt gctctgctta caaaaaacgt gcccaatttg      1020
     ccacagcacg aatctggcaa aaatccaaac tcagttatgc tgaaacagtc ggtaatttgc      1080
     ctaactccga cttctgtcat gaaaacccgt atgcgtcgct cagtgaactg tcagacattg      1140
     atgaaaatga gtcagtatgt agccgttcgg aatccttgaa acgcaaaaag ttaacccgag      1200
     caaaaaaatc aaagagaacc aaatcctccg atcatcagcc agattccatt ctgtcgtctc      1260
     aaaatgtaat gaatgttcca actagcaaat cttccaatca tcaaccatgt gttgcaccgt      1320
     tggcttcgcg acaacaacat caatccgtta gctcgcaccc accgtttctt gattttccat      1380
     ccacctctcg tctgtcacaa ccctcccgga aacctcctga gtttcaatac aaagaatccg      1440
     attttccaaa cctccctgga gtggccagct ccacagaaaa ctcctctaca gctgtaggtt      1500
     taacagttac ccagatagtt aagctatttt cggagatatt ccagctaact ccggcttgga      1560
     cagacatcct cctgaaactg acacccatat tgaacatcct tctgaaaaaa ctgatttcat      1620
     cgtggccact ccttggactg ttagtatcta tcgatggcta actcacttct aaaccagaag      1680
     ttttccgtat tccagtggaa ttgcagaagt attctgccaa aaatagcaaa tctaaggtgc      1740
     ttcttactta agctaaatgt tgattgtttc gcgctctcgg aaacatttct tactccggat      1800
     ttgaattttt atctacagaa ctacaatatt cttcggaatg atcgagatat ccgagcaggg      1860
     ggtgttatgt tgggtataaa gaactgttat tcatttcgtc gtatagatct accaaatgtt      1920
     aatccaatcg aagtggttgc ggctgaaatt gagattgaca atatggtgtt ttcaatcgct      1980
     tccctgtata ttcctccatc agctagattg atacctagtg tcttaagaac gttagtcagc      2040
     aaactttctc atcctgtatt tctactcgga gattttaact cccatggttg tgcgtggggg      2100
     gaggatagag atgacagtag agctaatatg atctacgaca tattagacga atttcgccta      2160
     tcagtgttaa acacagggaa agtaactcgg atagcctgtc ctccatcttg taacagtaga      2220
     gtcgaccttt cactgtgctc atcgaattta tctttaagtt gtgtctggga tgttgttgat      2280
     gaccctgctg gtagcgacca tctgccgatc cacatatcat tttgtacaaa ctctaaaagg      2340
     gaactagtgg ttccctatga cctgacaaaa catattgatt ggtccaaata ctcctcgaca      2400
     attttaacag aaattgaaaa cgtttcagta caggaaccgg atttgcacgg attcctaaca      2460
     aacttgattt tgatggcagc cgaaaactcg caaactaagc caatccgttc gtcactttcc      2520
     aaaactaagg ctcccacaat ttggtgggac caagagtgta ctgatattgt caagcagagg      2580
     tcagatgcct tcaaaatgtt ccgaaagttt ggattgatgc aagatttctt gaattataaa      2640
     aagttagagg ccaaaagtaa aatgattttc aaaaataaga aacgtaattt ttggaagcag      2700
     ttcgtagaat ctctgaccaa agataccgcc atgcctattt tatggcaaac agcgcgtagg      2760
     ctgaggaact ttaatccaag tccttcggat attcgagaat ttgattcgag ttggatcgat      2820
     cggtttgctg aaaacgttag cccttgtttt gtgtctactc aaccgccgtt attcattgaa      2880
     aatgatacgg tttcaatgga tctagtagag gattttagct tcacagattt agaaaacgct      2940
     ctcgtatcgt gtaataattc ttcacctggc atggatggaa tcaaattctc tctattgaaa      3000
     aatctaccta ctcctgctaa agagctcctc cttcgttcat acaactggat cttcaaaaac      3060
     aaatccattc cagtagcctg gaggaatatt aaggttgttg ctatactcaa agctggtaaa      3120
     gaccccggta tatcacagtc gtatcgtcca ataggtttgc tatcctgcac tcgtaaaatt      3180
     ctcgaaaaaa tgatcctcgt tagactagaa gtttgggctg aaaaaaatca actactttct      3240
     ccgacgcaat atggttttcg ccacgcaaaa agtacaagag attgccaagc attattagct      3300
     actgatattc aaatcgcatt tcgatccaaa caagcattga ctgcagtttt ccttgatata      3360
     aaaggggcgt acgattcagt gctaattgac attctatgcc acaagctatg caagcttgga      3420
     gttccagttc agttagctga ttttttgttc aacctcttgt cgctgaaaac tatgcatttc      3480
     tatcagaact ttcaagttaa acatgtccgc aactcatgtc taggattaac acaaggatct      3540
     tctctaagcc ctctgcttta caatctctat actagtgata tagatagcag cattgaaagc      3600
     ggatgtgttt tagtacaata cgctgatgat gcatgtttat gggctactgc taaagatgtt      3660
     aaattttcgg aaggaactct tcagacctct ttaaataacc tcgcaatatg ggcacaaaac      3720
     ctcggattgg aattctctgc ttcaaaaacg gaaatcgtgg tattctcgaa taaacgaaca      3780
     ttgtctccac tacagttaca tctgtatgac cttcgaataa cccaaagcct ctgttataaa      3840
     tatctcggtt tatggttcga ttcaaaatgt acttggagaa ttcatgtcca atatgttgtt      3900
     cgaaaatgtc aacgaagaat aaactttcta cgtaccatag cagggacatg gtggggagct      3960
     cacccgtcgg atatgataaa attgtacaaa acgactatcc tatcagtaat tgaatacggc      4020
     tctttcattt ttcacatgac tgctaaatcc catttcatca aactcgaacg gattcagttc      4080
     aagtccctga ggatatgctt gggtttgctg aattctactc atactcagtc ggttgaagtg      4140
     atagctggtg tccttccgct gaacattcgg tttctagaat tgaattgcag gtatttagcc      4200
     aattgtcaca taacatcttc tagagtgatg atccaattag atgaactgtt cagaatacac      4260
     ccacagtcaa atttccttcg atcgtaccga gaatgtcttg tgttgccaac ttcccctagc      4320
     tcggacaatt tttatgatta tgaagtgcca gcacgcccat ttgaaatcga cgtcaatacg      4380
     tcgttagtcc aaaatctggc gaatttgccg aaaccgttac taccatgtca agctaaacaa      4440
     gcataccttg agaatttatc aaacattaac gcagaggaga tgtttttcac ggatggctct      4500
     ttaggagttg ataactgtgg attcggagtc tacaattgta acttcgaagc aagcttccag      4560
     ttagagtttc cgtgttcaat ctataaagcg gaaatgttag ccgtaaaatt tacagtagat      4620
     tatatcaaat ctcttccacc caaaagatac ctcatttgct ccgatagctt aagctcaata      4680
     gaaagcctaa aaaacattcg agtttctacg aaaacaagtc taattgcttt gtacattaag      4740
     gaaaccgtgg catggcttgc caaacgccaa tatacgatca catttatgtg ggttccgtcg      4800
     cattgcggga ttgagggcaa tgaatttgct gatgcccttg caaagcaagg agcccgaaat      4860
     ggtgatgtgt atcaacattg cccagaagct cgcgattttt atgcaatcat aagacagaca      4920
     gctttgtcgt cttggcaaga tagttggtct aatagtgaac taggtagata ctgttacagt      4980
     attctaccca aagttagtct ttcttcttgg ttttcaacat tacagtgcaa tagactgttc      5040
     gtaaaaaata tgtctcgcct aatatcgaac cattatactt taaaagcatc tcttttcaga      5100
     gtaaacatag tcaactccaa cctttgcgat tgttccctga gctacgaaga cattgatcac      5160
     attatttggc aatgtgagaa attcgaagag acaagaccat ccctgttaca acaattggaa      5220
     cgagaaaatc gagctccgca acccatcaga gatgttttgg gaaatatgga tatcctctat      5280
     atgcaaatcg ttaataactt catcaaaaag tcaaaaattc aactgtgaac tgttcttata      5340
     ataataatac accatttttg ttcattttgt gaaaaaaaaa ctaacaaaaa tactatgtgt      5400
     aaatagattg taaacaacta acatgaaaaa tcggctccgt taaggtcttc caatgagcct      5460
     aataaactat ttagtaaata aaaaaaaaaa aaaaaaa                               5497
//
ID   I-14_AAe    repbase;    DNA;    INV; 5122 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-14_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5122
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1369-1369 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..1350
FT                 /product="I-14_AAe_1p"
FT                 /translation="MPGNDGASQQTAAPRKRCYQPDFPGPFLVIAEAQGEA
FT                 NLSISTMAKRIIQNFGRDYVKAAPISRRKMKILMRTANAANSLLEMDVENV
FT                 SFMVPQRLIETLGVASIELEVEDEELRDAISFDKGKSIQLFNPDIVEIRRV
FT                 VKKHGTELTPLTTVIITFSGLTLPTHVEINRALYKVKPYIYPLRQCRNCWR
FT                 LGHSLKNCRSKKRCHCCLENDISDDHECNQTSPQCVNCGGKHAANDTRQCP
FT                 KIKRQXEADRDRQNSYSQGPTDWFSLLGKKEAAPLEAPCVIISPPNAESTM
FT                 VPAIQSQPSLQASSDLQVPSTCCGPASSGSKQPSVTGSVTRAKRTKRASTG
FT                 DISEDGLPSLELHVEEQVCTAIKEGLNTNNVREMIRELQDSSSGFTEQQFR
FT                 SEILALISERVKQYIGSLRL"
FT   CDS           1366..5022
FT                 /product="I-14_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNTSTSMWPLQFMQWNCRGINSKKASMINLINSTKSS
FT                 VLLISETHLDADKQFDIQGFHVFRKDHRSNARGVLVAARKELQPKSFPLTT
FT                 PEGIDAVACQIACSLGNMVIVSVYIHPNSTVSQAELEEFLGGIPQPCIVGG
FT                 DWNAKHPLWGDHRQDRRGDSLQSALLNLNLVVLNNGSYTRVDVHRASSVID
FT                 ITLASADISLLFEWRTLDYAFGSDHFPIAFGTEEITTEIKQQPFNYRKMDW
FT                 DAFRNRVEDEISANMGVVDYETFFQIVWGSLTQSSPAQRTQNNPKMVPLPY
FT                 WDDELKSALSDSRRAFKVWRRSLEYAAYEGYKEAELKFKKLVKKKRKESWR
FT                 KHCDTLDSQTSVRDLWRWAKRFKGRKSGNQCQLRNEQVLEQLLDRLAPAYT
FT                 CTQPMEILECDCGRHSPGGFFTIHDLQTAFKQGKDSSPGVDGICYSVLNNL
FT                 PFNGQVCLLKIFNAIFDCGNIPEAWKIFKIIPILKPGKPPEEAASYRPIAL
FT                 ASCFRKTYENMVKEKIEWYLEHNLRFPELICGFRKGKGTFDALHILIDEVR
FT                 TAFHNHQHVVLCSVDVMSAYDNVQIPLLVRELRRVGISECLVKSIYGLFVE
FT                 RIISGSIDSLRNIERRTWIGLPQGSPLSPLCFNILISSLMVSRTPGPVKID
FT                 FADDMSIIVRGTTLEDSVSIIQGAVSDLADGLTSVGLEVSPTKCSAMIFSN
FT                 RALGESYPIYINNTMVNYKSCIKLLGLYLTPTLSWGMQISYIKQKASLYVN
FT                 FMRSVAGQTWGAHPDALLTIYKTCIRSILDYGCIFFESAPTDELVKLDRIQ
FT                 WACIRIILSSTKTTHTGSLEVLCGLLPLKLRREMLACKFVNKRFSLESWYE
FT                 KFVIPVIEGRAAQSGIGKAILMYRVYAGPLSTIRILPCFHFTPQIRQKLVS
FT                 IDLSIHRLLQNNHRYCTEEIENMIATRYPNATLLGTDGSRSSAACGYAVVS
FT                 QTGEALCQTKLPPTVSVFHAELLGIYRALEHIYACQGLEFLILSDSLSSLT
FT                 SLANRKLQPKLPPLWYQTRKLIRDIEESGKSVTLMWVPAHRNIAINEAADR
FT                 EAKAASVHGSPERYQFSSFDIVFPSKRKAVSIWQEVWDNGSKGRFCYSILP
FT                 TVTTNPWWSSYNLNRRQIVVLSKLISNHSRIAAHLKRNNIIEDDNCECGDG
FT                 ASSPDHLIFTCARYEAHRQELWRAVIKEGIAPDVQIILKTQNSILYELLAN
FT                 FFIRTNIDL"
XX
SQ   Sequence 5122 BP; 1543 A; 1130 C; 1126 G; 1321 T; 2 other;
     cagttacaat cgaactgcgg tgagccacag acgtgttgag ccaactttcg atatatctac        60
     ctatctctat tatcggatcg gttattgttc ggtcgctttt gtgaaataat gcctggcaac       120
     gacggtgcat cgcagcaaac cgctgctcct cgaaaacgtt gctatcagcc ggacttccca       180
     ggacctttcc tggtaatagc agaagcacaa ggtgaagcta atctatcaat ttcaacgatg       240
     gccaaacgga ttatccagaa ctttggccgc gattatgtga aagctgctcc aatatcaaga       300
     cgtaagatga aaatcctcat gcgaacggcg aacgctgcta acagtctact ggagatggat       360
     gtggaaaatg tttcatttat ggtccctcaa cggctgatcg aaactctcgg tgtagctagt       420
     attgagctag aagtggaaga tgaggaatta cgcgatgcca tctctttcga caaaggcaaa       480
     tcaattcaac tattcaaccc tgacatagtt gaaattcgcc gggttgtaaa gaaacatggc       540
     accgagctga cccctctaac gacagtgata atcactttca gtggtttaac tctacctacg       600
     cacgtggaaa taaatagggc gctctacaaa gtcaagccat acatctatcc actacgtcaa       660
     tgtcgtaatt gttggaggtt aggtcatagc ctaaagaact gtaggagcaa aaagaggtgt       720
     cattgctgtt tagaaaacga catttcggac gatcatgaat gcaaccagac ctcaccgcag       780
     tgtgtcaatt gcgggggtaa gcatgcagcg aatgacacta gacaatgtcc gaaaataaaa       840
     cgtcaaatkg aagctgatcg agatagacag aattcgtatt cgcaaggscc tacagactgg       900
     ttttcgcttc ttggaaagaa ggaagcggcc cctttggaag ccccatgcgt aataatttct       960
     cctccaaatg cagaatctac aatggttcct gcaattcaat ctcaaccttc tctacaagca      1020
     tcatcggatc tccaagtgcc atcaacctgc tgcggtcctg ctagtagtgg cagtaagcaa      1080
     ccatctgtta ctggttctgt cacacgagcc aaacgtacga agcgagcatc aacaggggac      1140
     atttctgagg acggcctccc aagcttagag ctgcacgtgg aggagcaagt atgtacagct      1200
     ataaaagaag ggttaaatac caacaacgtc agggaaatga ttcgtgagct gcaggattcg      1260
     agctcgggtt ttactgagca acagtttcgg tcggaaatac ttgccctcat cagcgaaaga      1320
     gtgaagcagt acataggttc actgcgttta taatgaacaa ctactatgaa cacttcaacg      1380
     tcgatgtggc ccttacaatt tatgcaatgg aattgtaggg gaattaactc taaaaaggct      1440
     agcatgatca acctaattaa ttctacaaaa tcatcagtat tgctgatttc cgagactcac      1500
     ctggatgctg acaagcagtt cgatattcaa ggcttccatg tcttcaggaa agatcatcgg      1560
     agcaatgcac gaggagtact agttgccgca aggaaggagc tacaaccgaa atcgtttcca      1620
     ttgactacac ctgagggcat tgatgcggtg gcctgccaaa tcgcatgcag tctcggcaat      1680
     atggttattg tatcagtcta catccatcca aactcaactg ttagtcaagc agaattggaa      1740
     gagtttctgg gtggcattcc gcaaccttgc atcgtaggcg gtgattggaa tgctaaacat      1800
     cctctttggg gtgaccatcg tcaagatcgt cgaggagatt cacttcagtc agccttatta      1860
     aatttgaatc tcgttgtgct gaataatggc agctacacgc gggttgatgt tcatcgtgct      1920
     tccagtgtga tagacatcac cttagcatca gctgacataa gtcttctttt tgaatggaga      1980
     actttggact acgcattcgg aagcgatcat tttcccattg ctttcgggac tgaagaaatt      2040
     accaccgaga ttaagcaaca accattcaac tatcgcaaaa tggactggga cgcattcaga      2100
     aatagagtag aagacgaaat ctctgcaaat atgggtgttg tagactatga aacctttttc      2160
     caaattgttt ggggaagcct cacgcaatct tcaccagccc aacgcactca gaacaacccc      2220
     aagatggttc ccttaccgta ctgggacgat gaactaaaat ctgcactatc ggacagcaga      2280
     cgcgctttca aagtgtggag acgttcactg gaatacgctg catacgaggg atacaaggag      2340
     gcggaattga agtttaagaa gctagtgaag aaaaaaagga aagaatcttg gagaaaacac      2400
     tgtgatacat tggattctca gacttcggtt agagatcttt ggagatgggc taagcgattt      2460
     aaaggaagga aatcgggaaa tcagtgccag ctgcggaatg agcaagtatt ggagcaattg      2520
     ttggatcgtc tagcccccgc atacacttgc acccaaccta tggagatatt ggagtgcgat      2580
     tgtggaaggc attcgccagg aggattcttc actattcacg atcttcaaac ggccttcaaa      2640
     caagggaaag actcctctcc cggtgttgat ggaatttgct actcagtgct caacaatctg      2700
     ccattcaatg gacaagtatg tctcttgaaa atcttcaacg ctatatttga ctgtggaaac      2760
     attcccgaag catggaaaat tttcaaaatc atcccgattt tgaaaccagg caaaccacct      2820
     gaagaagcag cgtcttaccg cccgatagcg ttggcttcct gctttcgtaa aacttacgaa      2880
     aatatggtaa aggaaaaaat cgaatggtac ctagaacaca acttgcgatt ccctgaatta      2940
     atatgtggtt ttcgtaaggg aaagggtact ttcgatgccc tccacatatt aatagatgaa      3000
     gttcgcactg cttttcacaa ccaccaacat gtagttttat gtagcgtgga tgtgatgagc      3060
     gcctatgata atgtgcaaat tcctttactc gttagagagc tgcgaagagt aggtatatct      3120
     gaatgtctcg tcaaatcaat ttatggtctc ttcgttgaac gtataatatc ggggtcaatc      3180
     gatagcctca gaaacatcga aagaaggaca tggattggat taccacaggg ttctccgtta      3240
     agcccccttt gcttcaacat cttaatcagc tcgctgatgg tatctcgtac tcctgggcct      3300
     gtcaagattg atttcgctga tgacatgtcc atcatagtac gagggacaac tctagaagat      3360
     agcgtttcca ttatccaagg tgcagtgtcc gatcttgcgg acggattgac ttcagtgggg      3420
     ttggaagtat cccctacaaa atgttcagca atgatattta gcaatcgtgc tctgggagaa      3480
     agttatccaa tctacataaa caatacaatg gttaactaca aaagctgtat caagctacta      3540
     ggattatatc taactcctac actctcctgg ggtatgcaaa tcagctacat caaacaaaaa      3600
     gcatcacttt acgtaaattt catgcgatcg gttgctgggc aaacttgggg tgcccatccc      3660
     gatgctttgc tgaccatcta caaaacatgt attcgatcaa tactcgatta tgggtgcatc      3720
     ttctttgagt cagcaccaac cgacgaactc gtcaaactgg atcgaataca gtgggcttgc      3780
     atccgcatta tcctaagttc caccaaaacc acccacactg gatcattaga ggtattgtgt      3840
     ggacttctac ctctaaaact ccgaagagag atgttggcct gtaaatttgt caacaaaaga      3900
     ttttcactag aatcatggta tgaaaaattt gtgataccag taatagaagg acgagcagcc      3960
     caatccggga taggcaaggc gattcttatg tatcgcgtat atgccggacc tttatccaca      4020
     atacgaatcc taccgtgctt tcatttcaca ccccaaataa gacaaaaact tgtttccatt      4080
     gacctgtcga tccataggct gttacaaaat aatcatcggt actgcactga ggaaattgaa      4140
     aacatgattg ctaccaggta cccaaatgcg actttactgg gtacggatgg atctagatct      4200
     tcagcagcat gtgggtatgc agtggttagt caaacaggcg aggcattgtg ccaaaccaaa      4260
     cttcccccta cggtgtcggt ttttcatgcc gaacttttag gcatttaccg agctttagag      4320
     cacatatacg cttgtcaggg attagaattt ctcatcctgt ccgatagtct tagcagctta      4380
     acaagcctag ctaatcggaa gctacaaccg aaactaccgc cattgtggta tcagacaaga      4440
     aagttgattc gagacatcga agaaagcggt aagtccgtca cgctaatgtg ggttccagca      4500
     catcgtaaca ttgctatcaa cgaagccgca gatagagaag ccaaagcagc atccgttcat      4560
     ggtagcccgg agagatacca attctcttca ttcgacatcg tcttcccctc taaacgcaaa      4620
     gcagtgagca tttggcagga agtttgggac aacggctcta aagggagatt ctgctacagt      4680
     atcctgccta cggtgactac caatccgtgg tggtcttctt ataaccttaa ccgtcgtcaa      4740
     atagtggttc tatccaaatt gattagcaac cattcaagaa tagccgctca tctcaagagg      4800
     aacaacatca tagaagacga taactgcgag tgtggcgacg gagcttcatc acctgatcac      4860
     ctgatattca catgcgcaag gtacgaggct caccgccaag agctttggag agccgttatc      4920
     aaggaaggaa ttgctccgga tgttcaaatt atacttaaaa ctcaaaacag tatcttgtat      4980
     gaattgttag ctaacttttt cattcggaca aatatcgatc tataaaatgt atttcatttg      5040
     ttaatctcac ctggctaaaa tatgttgtaa aacaagaggc caaataaaga agtgttgaat      5100
     taaaaaaaaa aaaaaaaaaa aa                                               5122
//
ID   I-15_AAe    repbase;    DNA;    INV; 4983 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-15_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4983
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1370-1370 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..1239
FT                 /product="I-15_AAe_1p"
FT                 /translation="MADDNLRRQRQYPISSPGPFLVIAESEDGSNLAPSTL
FT                 SKNVIRLMGDQFVKSLPQSKRRIKILMASAEAANTLVAAKLPNVSFSIPQR
FT                 LVETLGVGHVELDVDDEELQYAISFDKTKAEQDNNPEVLEIRRITKRAGEG
FT                 RERLTTVIVTFAGQTLPTHIELNRALYPIKQYVFPQRQCIKCWRFGHGEKN
FT                 CRSKIRCNRCTETNITVEPEHVCETEEPKCVNCNGGHLANEVKKCPYAIRR
FT                 KEADLNRNAAYSQGPKDWFSNLAIPTAKVPTIVIPPTTTFIPIENEDTNND
FT                 HLAPGPSKRRRPSTCLDGEAIPALELHVESSIRSVVEEAFKSPEIIGAVDD
FT                 IIGAPVEYKERAEENLRAAISEVVSQRVQTFMSSLRL"
FT   CDS           1246..4908
FT                 /product="I-15_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="NTPGTPVQSIPLQILQWNCRGAISKKANILHLINSLQ
FT                 SSVVCLSETHLDNMTSFDISGFRVFRKDHQRNSMGVLVAARNELHPKALTL
FT                 PSIDGIEWIGLQLHSCVGVMSIVSLYIHPHASVSQNQLEILIRCVPRPCVL
FT                 TGDWNAKHPMWGNVRHNSRGNYLHAVLEDSDLVILNDGSITRFDATRTASA
FT                 LDLTLVSAEISLMFNWEVIEDPNSSDHLPISCGSLELIVETRFPAINYRRM
FT                 DWEKFNSNVESAILCVESEITYEQFFNILWSALVDSSPPPRHVGSLKVPQP
FT                 FWDDELSAARQDSRSKFKVWRRTLEYEKYCEYVEADNEFKRLVKVKKRQSW
FT                 KQLCDGFDSQTSVSSLWTLARRFKGRASGGNRQLRDEQQINIFLDKLAPAS
FT                 TMENVINFPNCDCNIHNHSSCFTTLELEAVIQKGKDTAPGVDGISYSVIQR
FT                 LPFIAKKSLIKIYNTIFETGVIPEVWNTFQVVPILKPGKPPSEANSFRPIA
FT                 LASCLRKSYETMVKEKIEWYVENHKLLPDGICGFRKGKGTLDALHLLIDEV
FT                 QTAFQNRQHVIACSIDIQGAYDNVQIHSLVAQMRSLGVAECLSMSVYALFK
FT                 ERHLVVSLGDTSKIERTTWKGLPQGSPLSPLCFNLLIHGLFKPSDGAVIRV
FT                 GFADDITIAVRGSNMLDSVNKSQEAINEMVHEINNLGLQVSPSKCTAIVFA
FT                 KRMVDDVPQLRVEDQILEYSPSLKLLGLHLTPTLHWGKHFFYLKHRAGLFI
FT                 NFMKSVAGQAWGADPGALLTIYKSCVRPILEYGSIFFRGASEKDSITLDRI
FT                 QWNCIRIALGSTKTTHTGSLEVMAGLTPLDIRREAATMKFIERRYSIKSWN
FT                 DKFVKTTIDGSASTWIRRSILQYTAYTGRQVETFEVLPCFEFELGMRQKVV
FT                 TVDKSVSFELSXNSSLKANEVVRNLLEHRYPNASNLATDGSKTIDGTAYAV
FT                 VNAFGQPISQIKLPHQVSVFHAELLALRKVTQIIAAMPRADYVVLTDSLSS
FT                 LESLSNIKITSYHPSAWYEIKALVQSIEEKGSSITFLWVPSHQNIPLNEAV
FT                 DGAAKEACQSGGSDYYRFTCLDIAYPTRTRSINLWQSAWNAGIKGRFCHSI
FT                 LPIVSTQAWFNDFGFSRREIVLLSKLISNHSRLPSHLKRNNIVEDDTCQCG
FT                 EGVASPDHLLFDCNIYEDWRRNVWIEIVGERAFPDLQLILRSRDMNVLKTI
FT                 ANFFINCNIDM"
XX
SQ   Sequence 4983 BP; 1497 A; 1072 C; 1110 G; 1303 T; 1 other;
     cagtgctgct ttagccttgg ttagcaacag acgtgtcgca ccaaagcgtg tatagcaaaa        60
     taaatttcaa tagaaactac aacttctgtt gaactgagta tggctgacga taatctccgt       120
     cgtcaaagac agtatcctat ttcatcgccg gggccattcc tggtaatcgc tgaatctgag       180
     gatggctcaa atttagcacc atcgacgctt tcgaaaaacg tgattcgcct gatgggagat       240
     caatttgtga aatcattacc acaatcgaaa cgccggatca aaatattaat ggcatcagct       300
     gaagctgcga ataccctggt tgcggcaaag ttaccaaacg tttcgttctc gattccgcag       360
     cggctagtgg agacgttagg tgttggccat gtggaactcg acgttgatga tgaagaattg       420
     caatatgcca tatcattcga taagacaaaa gccgagcaag acaataaccc tgaagtgttg       480
     gaaattcgac gtatcacgaa gcgcgcgggt gaaggtagag agcggttgac tactgttatc       540
     gtcacgtttg cgggccaaac actacctacc cacatcgagc tcaatagagc gctctatcca       600
     attaaacagt atgtgtttcc ccaacgccaa tgcatcaaat gttggcgttt cggacacgga       660
     gagaaaaact gtaggagcaa aattcgatgc aacaggtgca ccgagactaa catcacggtt       720
     gagccagaac atgtatgtga gacggaggaa ccgaaatgcg ttaattgcaa cggcggtcat       780
     ctagcaaatg aagtcaagaa atgcccttat gctattcgcc gcaaggaagc cgatcttaac       840
     aggaacgcag cttattccca aggacctaag gattggttct ccaacttagc aattcccact       900
     gcaaaagtac caactatcgt tattcctcca actacaacct tcattccaat tgagaatgaa       960
     gacaccaata atgaccatct tgccccagga ccaagtaagc gtagacgtcc atctacttgt      1020
     ctggatggcg aagcaatccc agctttggaa cttcacgtgg aatccagcat tcggtctgtc      1080
     gtggaagaag ccttcaaaag tccggaaatc attggagccg tcgacgacat catcggagcg      1140
     ccggtggaat acaaagaaag agctgaagaa aatttgcggg ctgctatcag tgaagtggtg      1200
     agccaaaggg tgcaaacctt tatgagctct ttacgtttat aataaaacac gccgggcacc      1260
     cccgttcaaa gcatacctct acaaattcta cagtggaatt gtaggggagc gatcagcaaa      1320
     aaggcaaaca tcttgcatct cattaacagc cttcaatcat cggtagtgtg tttatccgaa      1380
     acacacctag acaacatgac cagcttcgac atttccggtt ttcgagtttt tcggaaggat      1440
     caccagcgaa actctatggg ggtactcgtt gctgctagaa acgagttgca ccctaaggct      1500
     ttaacattac cctcgatcga tggaattgaa tggatcggat tacaactcca cagctgtgta      1560
     ggtgttatgt ccatcgtttc gctctatatt catccacatg catcggtatc ccagaatcaa      1620
     ttagaaatat taattaggtg tgtaccacgc ccgtgtgtgc tgactggaga ttggaatgct      1680
     aaacatccta tgtgggggaa tgttcggcat aactctcgtg gcaattatct gcacgctgtt      1740
     ttagaggact ccgatttagt aatacttaat gatggtagta tcaccagatt cgacgctaca      1800
     cgaaccgcta gtgcattgga cctcacttta gtgtctgcgg agatcagctt gatgttcaat      1860
     tgggaggtga ttgaggatcc taacagtagt gatcatctac ccatctcctg tggatcgcta      1920
     gaactgattg tagaaacacg gttccctgca atcaattaca gaagaatgga ctgggaaaaa      1980
     ttcaactcga atgtggaaag tgcaatactt tgtgtggaaa gtgaaataac atacgaacaa      2040
     ttcttcaata ttctatggag tgctttggta gattcttcac ctccccctcg tcatgttgga      2100
     agtcttaagg tacctcaacc tttctgggac gatgaattga gcgcagcccg tcaggactct      2160
     agatcgaagt tcaaggtctg gcgtcgtacc ctagaatatg aaaagtattg tgaatatgtg      2220
     gaagcagata acgaattcaa aagactggtg aaagtgaaaa aaaggcaatc ttggaagcag      2280
     ctttgtgacg gtttcgattc ccaaacttca gtcagctcac tttggacgct tgcacggaga      2340
     ttcaagggcc gtgcatccgg tggaaatcgg caattacgtg atgaacaaca gattaacata      2400
     tttctggaca aacttgcacc tgcatctaca atggaaaatg tgataaactt cccaaattgt      2460
     gactgtaata tccataacca tagttcttgc ttcacaactt tggagctaga ggcggttatt      2520
     cagaagggaa aggacactgc tccaggtgtc gatggtatat cttactcagt gattcagagg      2580
     ttgccattca tagccaagaa atcattgatt aaaatttaca acaccatttt tgaaacaggt      2640
     gttatccccg aggtctggaa cacctttcaa gtggttccga ttctgaagcc tggaaaacct      2700
     ccatcagaag ctaactcttt ccgccccata gccttggcgt catgtctccg taaaagttat      2760
     gagactatgg ttaaagaaaa aattgaatgg tatgttgaaa atcacaagct tcttcctgat      2820
     ggaatttgcg gatttcggaa aggtaagggc accctagacg cactccatct gctcatcgat      2880
     gaagtgcaaa cggcgtttca gaatagacaa cacgtgatag cctgtagtat cgacatccaa      2940
     ggagcatacg acaacgttca aatacattct ctggtggcac aaatgagatc attaggagtt      3000
     gctgagtgcc tatccatgtc ggtttatgca ctgtttaaag aacgacatct tgttgtgtct      3060
     ctgggagata cgagtaaaat tgaacgcaca acatggaaag ggctgccgca aggatcccca      3120
     ctgagcccat tatgcttcaa tctactgatt cacggactat tcaagccgtc tgatggtgct      3180
     gttattcggg tcggctttgc tgatgatata acaattgcgg tacgtggttc gaatatgctg      3240
     gatagtgtaa ataaatccca agaagcaatc aatgaaatgg tgcacgaaat aaacaacctt      3300
     ggcttacaag tatcaccttc taagtgtaca gcgattgttt ttgcgaaaag aatggtagac      3360
     gatgtgccgc agctgcgagt ggaagatcaa attttagagt acagtccatc gttgaagctg      3420
     ctaggacttc acttaacacc tacattacac tggggaaaac atttcttcta tcttaaacat      3480
     cgcgcgggac tgttcatcaa cttcatgaag tccgttgctg gccaagcatg gggtgccgat      3540
     cctggcgctc ttcttaccat ctataaatct tgcgttagac cgatcttgga gtacgggtct      3600
     atatttttcc gtggcgcctc cgagaaagat tcgattactt tagaccggat ccaatggaac      3660
     tgcatacgta ttgcacttgg atctacgaaa acaactcata cgggttctct agaggtgatg      3720
     gcaggtctaa cacctttaga tatcagaaga gaagctgcaa ctatgaaatt cattgaacga      3780
     agatattcca tcaaatcttg gaatgataaa tttgtgaaga cgacaatcga tggttctgct      3840
     tcaacctgga tccgtcgtag tattttacag tacacggctt atacaggacg tcaagtggaa      3900
     acattcgaag tactgccatg ctttgagttc gaattaggca tgagacaaaa agtggtaact      3960
     gttgacaaat cggtatcgtt cgaattatca agmaactcat ccttgaaagc taacgaagtc      4020
     gtccgaaatc ttctcgaaca tcgatatccg aatgcatcaa atctggctac agacggttcc      4080
     aaaacaattg atggaactgc ctatgcggta gtaaatgcgt ttggtcagcc aatcagccaa      4140
     attaaacttc cgcatcaagt ttctgttttt catgcggagc tgcttgcact acggaaagtc      4200
     acacaaatta tcgcagctat gccgagggcc gactatgtag tactcacgga tagcttaagt      4260
     agccttgaat ctctttccaa cataaaaatc acctcttatc acccgtcagc gtggtatgaa      4320
     attaaggcat tggttcaatc catcgaagaa aagggatcaa gcattacatt cctatgggta      4380
     ccatctcatc aaaatattcc gttaaacgaa gcagttgacg gagcagcaaa agaagcatgc      4440
     caatcgggtg gatcagatta ctatcggttc acatgtttgg acatagctta tccaactcgg      4500
     acaagatcta tcaacttgtg gcaatcagct tggaatgcgg gcattaaagg cagattttgt      4560
     cacagtattc ttccaatcgt ttcaacgcaa gcatggttca atgattttgg tttttcgcgg      4620
     agagaaatcg ttcttctatc caaactgata agcaaccact ccagactgcc gtcacacctc      4680
     aagcggaata acatcgttga agacgacact tgccagtgtg gcgaaggcgt agcttcgcca      4740
     gatcatctcc tattcgactg caacatctac gaggattgga gacggaatgt ttggatcgaa      4800
     atcgtcggtg aaagggcatt tccagatcta cagttaatac tacgtagcag agatatgaat      4860
     gtacttaaaa caatagcaaa tttctttatt aattgtaata ttgatatgtg aattatttgt      4920
     tgacaaaaca tggccaaaca atggaaacaa gaggccaaat aaataaataa atagaaaaaa      4980
     aaa                                                                    4983
//
ID   I-1_AA      repbase;    DNA;    INV; 5258 BP.
XX
AC   .
XX
DT   27-JUL-2009 (Rel. 14.07, Created)
DT   28-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Aedes aegypti Nimb non-LTR retrotransposon - consensus sequence.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; I group;
KW   I-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5258
RA   Kapitonov V.V. and Jurka J.;
RT   "Nimb - a novel clade of animal non-LTR retrotransposons.";
RL   Repbase Reports 9(7), 1535-1535 (2009).
XX
DR   [1] (Consensus)
XX
CC   Nimb is novel clade of I-like non-LTR retrotransposons. It
CC   includes families of retrotransposons present in fish, molluscs,
CC   sea squirts, sea urchins and insects: I-1_DR, I-3_DR, I-5_DR,
CC   nimbus, I-3_AC, I-4_AC, I-1_CI, I-1_SP, I-1_AA, I-1_BM. I-1_CI is
CC   a family of tunicate Nimb non-LTR retrotransposon. The consensus
CC   sequence was derived from multiple alignment of 10 copies ~99%
CC   identical to each other. The 3' terminus is composed of the
CC   (TAAAA)n microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1344
FT                 /product="I-1_AA_1p"
FT                 /note="ORF1."
FT                 /translation="MAPPKGGGKKKKATEVQPKLDGHREGPKFIVIKRKDL
FT                 KDGSFEKVSPIFIHKGIKSICGEPLNIIKLRDGTLLVKTKNISQANQLLRG
FT                 KMMFDMEIAVEENAKLNQTKGIVTCADLRYATEEEIMEDLQEQGVSNVEVM
FT                 KRKRDGKLVATNSYILTFKSSGVPESVKIGYHVLSVRLFIPRPMRCYKCQF
FT                 FGHSSKFCLKEEVCSNCCQVGHTSNDCSGKTHCRNCSSSEHASWSTKCKVF
FT                 EAEQEITRIKVTENVSIREARQLYKARYPTITHAFSEIVRNSQVQVQNSIS
FT                 QIPVDEPKALSISSPSQQQRVDSQFALPSSVHAGSDHVGAIGMEYQVAKAS
FT                 RPLSQDTNELDEHELDVKRMRAAPSSSSGSSRSSDYDISLASNGL"
FT   CDS           1316..5014
FT                 /product="I-1_AA_2p"
FT                 /note="ORF2: AP endonuclease, RT, RNase H."
FT                 /translation="MISPLPVMDCKNSIVQWNCNGFFNSFQEIKVLDAQYN
FT                 PMVICLQETHLKHRNSASFKNFDLYRCDFTSDNDRARGGVMTLVRSQFVSR
FT                 RFNVDTVLQVVVVELLYPFKFTLCNIYLPPNELIEYDELAKLIIQLPKPFI
FT                 ILGDFNAHHSLWGSKVNSTRGKLIENLLSNFDLNIFNDGKGTRLNSSNGNE
FT                 TCIDLTICSASLSTLFSWNVLDDTCNSDHYPIFITPLNTRTVDEKRPHWIL
FT                 KTADWEKFSLIANFDDAFFNKSIDDQNAHVVETIINAANHCIKKSSAKAGR
FT                 KSVPWWNDTISKAVKDRTHSLNYFKKHPTSENEKRYKILKSKARALMRYHS
FT                 KQSWRNMVASINSNVPQTLIWKQIRSISGRHQSNLITALKHNDSILSSRTD
FT                 IVELLGKHFSEISSSKNYSSSFQRHKSIIEKSPLIITNNEKAYNKSFTTFE
FT                 FKSALNSTKGSSPGFDMIHYEMLKHLSESGKRYLLKFYDRIWTQQIFPNEW
FT                 RLAILIPINKPGKDSSLASSYRPISLTSCLCKLLERIVNKRLIWHIETNHI
FT                 LSNYQFGFRRGRSTTDSLTIIESDIQEALLKKHHTYAIFFDLEKAYDLTWR
FT                 RHVLNKLKYIGIDGNMLCFINNFLKNRKFRVLQGNTFSAPYELENGIPQGA
FT                 VLSVTLFLLAIDDIFQQIDSKCKMLLYADDIVLYMSSNFLNSIKKRIQSSI
FT                 NKMQKWLSNHGFRISISKTSCVHFCRRRKHSTNLVFRINDENIKEVEEVRF
FT                 LGMIFDRKLSWRTHIANVKKRCLKAMNIIKTLSNIKWGSDRKTLIKLHNAI
FT                 VLSRLEYGDCVYSSASSNLLKSLESVHHQGLRLASGAFRSSPVASILVDTG
FT                 FLPLSSRRDQHTLFQMSRILKNQTHPMLELMQNLSAGRNVKDRTFYSRCTK
FT                 ILNRLNVELPTIKTEHYSQVSPWLLSEPDINIDFSVFRKTTTNPKVYMSMF
FT                 NQIVHKYSNYRFLFTDGSKLNSITSCAIFDESKQITKKIRLPNNCSVYNAE
FT                 LTAILHAIEEIIFTDYDKFIIITDSLSALLSLSDPFSNHPIIQNIFDNISK
FT                 CQQKNKTIKFYFVPSHMGIRGNEIADKAAKEALSESDQQGELLAKDFKNFT
FT                 KMRFSQFWENVWKNITDNKYRQIRDSTHYWPCINTLGKRDSVVITRLRLGH
FT                 THYTHSYLMSKDDPPICDSCKQTITVRHIFDECSKYSMIRRKLCIHGIDTL
FT                 KDDLVGMKNVIRFMKETELYNLI"
XX
SQ   Sequence 5258 BP; 1760 A; 992 C; 931 G; 1575 T; 0 other;
     cattcgcagt taaactctcg ttcggatagg acgtatatca agtgtgctcc tctattgatt        60
     ggaaatatcg ttctctactt tttttattcc gacactccgc tttgttaagt attactctat       120
     tgtttttgtg aaggtcgtga cattccaact gctgtcgccg agaacagttc cgccaataaa       180
     atggcccctc caaagggagg aggtaagaaa aaaaaggcaa ctgaagtgca acccaagctc       240
     gatggtcatc gggaaggtcc taagttcatc gtaatcaaac gcaaggattt gaaggatggt       300
     tcttttgaga aggtcagccc gatcttcatc cacaaaggga tcaagagcat ctgcggtgaa       360
     ccacttaaca ttatcaagtt gagggatgga acgttgttgg tcaaaacgaa aaacatcagc       420
     caagccaacc agcttcttcg tggtaagatg atgtttgaca tggaaattgc tgtcgaggaa       480
     aacgccaagc tcaatcagac aaaaggaatc gtaacatgtg ctgacctcag gtacgctacg       540
     gaagaggaaa ttatggaaga tcttcaagag caaggagtat ccaatgtcga agtcatgaag       600
     cggaaaaggg acggtaagct ggtcgccacc aacagctaca ttctcacatt taagtcttcg       660
     ggagtacctg agagtgtcaa aatcggatac catgttctga gtgtgcgttt gttcattccc       720
     cggccgatga gatgctacaa gtgtcaattc ttcggtcact cgtccaaatt ttgtttgaag       780
     gaagaggtat gtagtaactg ttgtcaggta ggtcacacgt ccaatgattg ctcaggaaaa       840
     acacactgta ggaactgtag ctcctcagaa cacgcgtcat ggtccaccaa atgcaaggtg       900
     tttgaggccg aacaagaaat cacacgtatt aaggtcaccg agaacgttag cattagggaa       960
     gctcgacagt tatacaaagc taggtacccc accatcacac acgcttttag tgagatagtc      1020
     aggaacagtc aggtacaggt acagaactcg atctctcaaa ttccagtgga tgaaccaaaa      1080
     gccttatcga ttagctctcc ttctcaacaa caacgagtag actctcaatt cgctttgccg      1140
     agctcagtgc atgctggctc agatcatgtt ggtgcaatag gcatggaata ccaagtagcg      1200
     aaagcatccc gtcctctctc tcaagatacg aatgaattag atgaacatga actcgatgtg      1260
     aagagaatga gagctgcccc atcttcttca agcggtagta gtagatcgtc tgattatgat      1320
     atctcccttg ccagtaatgg actgtaaaaa ctcaatcgta caatggaatt gcaatggatt      1380
     cttcaatagc tttcaagaaa ttaaagtctt ggatgcccag tataatccaa tggtaatttg      1440
     cttacaagaa acacacctta aacatcgtaa ctcagcttct tttaaaaatt ttgatctcta      1500
     tagatgtgat tttacatctg ataatgaccg agcgcgtggc ggtgtaatga cattggttag      1560
     atctcaattc gtctctcgtc gtttcaatgt agatactgta cttcaagtgg ttgttgtcga      1620
     actattatat ccatttaaat ttaccctatg taacatttat cttcctccca acgaacttat      1680
     cgaatatgat gaacttgcta agttaataat tcaattgcca aagccgttta ttattctcgg      1740
     agattttaat gctcaccatt ccctttgggg ttcgaaggtg aattcaaccc ggggaaagct      1800
     tatcgaaaat ctgctttcta atttcgacct taatatcttc aatgatggca aaggaacacg      1860
     tttaaattct tccaacggta acgaaacatg catagatctt actatctgct cggcttcttt      1920
     aagcaccctt ttctcatgga atgttcttga tgatacctgt aacagtgacc attaccctat      1980
     tttcataacg cctctcaaca ctcgtacagt tgatgaaaag cgacctcatt ggattttaaa      2040
     aacagctgat tgggaaaaat tttcactaat cgcaaatttt gatgacgctt tcttcaataa      2100
     atcaattgat gatcagaatg cccacgttgt tgaaacgata ataaatgcag caaatcactg      2160
     tattaaaaaa tcttctgcca aagctggacg aaagtcagtt ccatggtgga atgatacaat      2220
     atcgaaagca gtcaaagata gaacacatag tttaaactat tttaaaaaac atccaacatc      2280
     tgaaaatgaa aaacgatata aaatccttaa atctaaagca agggctctca tgcgatatca      2340
     cagtaaacaa tcatggagaa atatggtagc ttcaattaac tctaatgtcc cgcaaacact      2400
     tatttggaag caaataagga gtataagtgg gagacaccaa tccaatttaa taacagcatt      2460
     aaaacataat gactccattc tctcaagccg tactgatatt gtcgaactct taggaaaaca      2520
     tttctcagaa atatcttcat ctaaaaatta ctcctcttca tttcaaagac acaaatcaat      2580
     aatcgaaaaa tctccactaa ttattacgaa caatgaaaaa gcctataata aatcatttac      2640
     gactttcgaa tttaaatcag ccctaaactc gactaaagga tcctctcctg gatttgacat      2700
     gattcattat gaaatgttga aacatttatc tgaatcagga aaacgatatt tattaaaatt      2760
     ttacgatcga atatggacac aacaaatctt tcctaatgaa tggcgactag ccatattgat      2820
     tcctattaat aagcctggaa aagactcttc tttggcttcc agctatcgtc cgatatcgct      2880
     gacaagttgt ctttgcaagc tccttgaaag aattgttaac aaaagattaa tctggcacat      2940
     tgaaacaaat catattttat ccaactacca atttgggttt cgccgcggac gatcaacaac      3000
     agacagttta actatcattg aatccgatat ccaagaagct cttctcaaaa aacatcatac      3060
     ttatgcgata ttttttgact tggagaaagc ctatgacttg acttggcgtc gccatgtttt      3120
     gaataaattg aaatatatag gaatagatgg taacatgtta tgctttataa ataattttct      3180
     caaaaatcga aaatttcggg ttctgcaagg aaacacattt tcagctccat atgaattgga      3240
     aaacggtatc cctcagggtg ctgttcttag cgttactttg tttctactag caattgatga      3300
     tatattccag caaatcgact ctaaatgtaa aatgttgctt tatgccgatg atatcgtgtt      3360
     gtatatgtca tcgaacttcc tgaattcaat taagaaacga atccaatctt caatcaacaa      3420
     aatgcaaaaa tggctctcaa atcacggttt tagaatatca atatcaaaaa catcttgcgt      3480
     tcatttctgt agaaggagga aacacagcac aaatttggtt ttccgtatca acgatgaaaa      3540
     tatcaaggaa gttgaagaag taaggtttct tggaatgatt tttgatagaa aactatcgtg      3600
     gcgaactcac attgcaaatg ttaagaaaag atgtttaaaa gctatgaata ttatcaagac      3660
     attgtcgaac attaaatggg gatctgatcg aaaaacatta attaagttgc acaatgctat      3720
     tgtattatca cgtttagagt atggagactg tgtatattcc tctgcatcat caaaccttct      3780
     gaaatctcta gaatccgtcc atcaccaagg ccttcgctta gcaagcggag ccttccgatc      3840
     atctccagta gctagtattt tagtggatac tggcttttta cctttgagtt caagaagaga      3900
     ccagcatacc ctatttcaaa tgtcaagaat tttgaaaaat caaacccatc ctatgctaga      3960
     gttaatgcaa aatttgtcgg caggccgtaa tgttaaagac cgaacttttt actctaggtg      4020
     cactaaaatt ttaaatcgtt taaatgtaga gttaccaact attaaaacag aacattatag      4080
     tcaagtttct ccatggttgc tttctgaacc cgatatcaat attgatttta gtgtttttcg      4140
     taaaacaact acaaatccta aggtatacat gtccatgttt aatcaaattg tccataaata      4200
     ttccaattat cgttttttat tcacagatgg gtcgaaatta aattcgatca cttcttgtgc      4260
     aatatttgat gaaagcaaac aaataacgaa gaaaatcaga cttccaaata attgttctgt      4320
     gtataacgct gaactaacag ctatactaca tgcgatagaa gaaatcattt tcactgatta      4380
     tgacaaattt attataataa ctgattcatt gagcgcattg ctatcactat ctgacccctt      4440
     ttctaatcat cctatcatac aaaatatttt tgataacatt tctaaatgcc aacaaaaaaa      4500
     taaaacaatt aaattttatt ttgttccaag ccatatggga attcggggca atgaaatcgc      4560
     ggataaagcg gcaaaagagg cattatctga gtcagatcag caaggagaat tattagctaa      4620
     agatttcaaa aattttacta aaatgcggtt ttcacaattt tgggaaaatg tatggaaaaa      4680
     tatcacagac aataaatatc gccagattcg tgattcaaca cactattggc cttgtattaa      4740
     tacgcttggt aaaagagatt cggttgtcat aacgagatta agattaggcc atactcatta      4800
     cacccattct tacctgatgt ctaaagatga tccgccaatc tgtgattctt gtaagcaaac      4860
     cataactgtc aggcatatct ttgatgaatg ctcaaaatac tccatgataa gaagaaaatt      4920
     gtgcatccat ggtatagata ctctcaaaga tgatttagtt ggtatgaaaa atgttattcg      4980
     ttttatgaaa gaaactgaac tgtacaatct aatatagaac aaaacattga aaaaagaata      5040
     tatgaaatta atagaaagca ttgtatgttt cctaaagtta aaggtgttaa gttaggtttt      5100
     taattattca ctttgttatt attatagtat tagtgttatt gtattattag tgtatcttta      5160
     tatttattgt attaatcatt gaaatattgt atatataact gccctctgac ggcccatata      5220
     gccctagttg cgctggtggc cgaccaaata aaataaaa                              5258
//
ID   I-1_BM      repbase;    DNA;    INV; 5377 BP.
XX
AC   .
XX
DT   27-JUL-2009 (Rel. 14.07, Created)
DT   28-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Silkworm Nimb non-LTR retrotransposon - consensus sequence.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; I group;
KW   I-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5377
RA   Kapitonov V.V. and Jurka J.;
RT   "Nimb - a novel clade of animal non-LTR retrotransposons.";
RL   Repbase Reports 9(7), 1536-1536 (2009).
XX
DR   [1] (Consensus)
XX
CC   Nimb is novel clade of I-like non-LTR retrotransposons. It
CC   includes families of retrotransposons present in fish, molluscs,
CC   sea squirts, sea urchins and insects: I-1_DR, I-3_DR, I-5_DR,
CC   nimbus, I-3_AC, I-4_AC, I-1_CI, I-1_SP, I-1_AA, I-1_BM. I-1_CI is
CC   a family of tunicate Nimb non-LTR retrotransposon. The consensus
CC   sequence was derived from multiple alignment of several copies
CC   ~98% identical to each other. The 3' terminus is composed of the
CC   (TAAA)n microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1472
FT                 /product="I-1_BM_1p"
FT                 /note="ORF1."
FT                 /translation="MDKPTPTVSYANVTSKTSYPKKDQAIIINSIDGIMIR
FT                 DYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKILKVKDH
FT                 VLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIP
FT                 DPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVC
FT                 NGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNS
FT                 TINLESEINQIYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQ
FT                 PEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDR
FT                 SEEQVWKDIKTELDQSETQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTD
FT                 DIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP"
FT   CDS           1532..5308
FT                 /product="I-1_BM_2p"
FT                 /note="ORF2: AP endonuclease, RT, RNase H."
FT                 /translation="MKILQWNVNGFHRRLENIQRILNDIDPLCICIQETNF
FT                 KNNYCAKLKNYIHFFKNRSNSSIASGGVATYVKSHTLPKEVDIISPLEVIA
FT                 IRIEYPLAITICNVYLPNSCPLSENDLNNLKNQLPTPFVLLGDFNSHHFYW
FT                 GSDHCDLRGKIISDWLDVDENMILLNTNQPTHFNNSNGHTSSIDLAFASRS
FT                 ISTYFDWYALDDLYDSDHYPIMITLKIDLSPANENAPQHFKYQMADWPNFR
FT                 SDIEIKINQLSKVTPESLTRINDLVDEFNQILLGSAEKHIPKTTGKIKKKQ
FT                 VPWWNDECDKSLKESKRAYRLYKKEKRKAEYYQKSPNRLDDLQNLQDSLKI
FT                 DYKRKRAKRFNARRIFKESRKKSWESFITSINSYTPPGIVWQKINAINGQK
FT                 SKKQTIVLKNNDRQLSGDPKNNSELLASAFAANSSSNNYSQEFLSFKNQIE
FT                 ENNNVFDFLDNSNSINQNITIHELYFYLHQLKHSSPGPDNISNTLIKNLPL
FT                 VALERLLDIYNFIWLNQVFPDKWREAIVIPIPKPGKLPTLTSSYRPISLTC
FT                 NLCKLLEKIVSNRLRWYLEQNQLISAVQFGFRQYKSTLDHLAYLENEILTS
FT                 FAIKNKVVAVSLDLEKAYEMVWKHRVLLLLEQMSIKGNTLAFVRNFLENRR
FT                 IRVKIDGIVSDPINTENGLPQGSVVSVILFLVSINSVTEVIERPVKGCLFA
FT                 DDLTLVCSGNSIKPTQTLLQNTLDKLSEWCRHTGFKFSDTKTEFIVLAKRK
FT                 KKETVSLTINNKQIKEVRHLKILGLIFDQKLNWVDHIKKLKSDCYNRLNVI
FT                 KILSGSSWGSDSTCIKNTYKALIRQKIDYGSIIYDSASSNILKTLESIHNT
FT                 SLRLSLGAFRTSPINSILVEAEEMPLAFRRKELCLSYAINHITNNKDSFIL
FT                 KDPVPSDIEFRLQPTLSSPLRLRIKKYLAEINLDFPPVFPRKHHYYPPWHQ
FT                 SNFTINMEIAQNNPRDTTSDYIYKDLFYEIKNNHLDFKMYYTDGSVCEGRS
FT                 GCAIVSENYSCKNRLQDYTSILTCEAVAILECLNIIKTNTNHKKYIVFTDS
FT                 MSTLMALSNNHNKNPLIILIKEILTGLIDNNYLIKLIWIPSHQGISGNERA
FT                 DTEAKRATKLAQCNYLTSNIQDLKKHIKWKIKTLWNSYWVKDNKSALYDIR
FT                 KSVFEKRNFQINNRKDQVVLNRLRIGHCNITHIHLITKEEIKKCSRCDSNI
FT                 SIKHLLTECPMFNAERHTSALPMCLFDCLNNNVKCTLKFLKIIDYHRLI"
XX
SQ   Sequence 5377 BP; 2002 A; 1006 C; 874 G; 1495 T; 0 other;
     cagttgcctt gcggtccccg tacggttcac acgtatcggt cgacgcggcg cggttaacga        60
     gtaattacga atataatatc actaccgagt gttctgtttt aacaccgttt gtcaagttag       120
     gggtactcct ggcaacggga gccccttctg acactatgga taaacctacc cccaccgtaa       180
     gttatgccaa tgtcacatct aaaaccagct acccgaagaa agatcaagct attattataa       240
     actcaatcga cggaatcatg attcgagact acttgttagc cctttccgca gtgaccaaat       300
     caacgtcaat ccgcttcatt tctcgcattt ccaactcgag aatctgcgtg tacttggact       360
     caaaacaaac agctgacgaa ttggttgacg tcattaaaat ccttaaagtg aaagaccacg       420
     tattggagat tcggccgctg ataacaagaa acaaacgtat cgttttatcc aacgtttgcc       480
     ccataattcc gcacgatatc ttagaagaaa aatttaatga aatgggtatt aaagtattgt       540
     ctcccataac attcatgaaa gtgggcatcc cggaccctgg tttttcacac attatgagct       600
     ttaggagaca agtatacgtt tcccctgagg atgaaaaaag attaccagaa tcgatgcaaa       660
     ttaactatga tgaaaccaat tattggattt atattacaaa cgaaacaatg aaatgctttg       720
     tatgtaatgg aatgggacac ttggcaaaat actgtccgca aagcagtcaa caggttcttg       780
     gtaccaaagg ccctaacaac ctcacgcaag acaattcaac tacttccaat gacactacag       840
     tcgaatccaa caagctaccg tcacagtctc tcaattctac aattaatctt gaatctgaaa       900
     taaaccaaat ctacccccct accgaaattt ccaaaccgca agtaccaaca aacttactac       960
     cacacaataa atttgacata tacaaaggtg ttaagcggat tcatccatct acctcttcag      1020
     aaccatcaca accggaaata aatcaagctg aacctacttt agatgacagt aatattatag      1080
     tcagtgatta cacggatgaa accgacagca attggtctct ggacgaagaa ctaaagaaga      1140
     cccctaagtc actcaagaag aagaagaaaa ctctcgatga cagaagtgaa gaacaagttt      1200
     ggaaggatat taaaacagag ctggatcagt cagaaacaca acctcacttc ccactcacct      1260
     tagaccagtt tattagtttt ttagataatt cccgtagcaa acaaaatctt caagaactta      1320
     tcaaagacta tacggatgat atcccggatc taattgatat gtgcacgttt ctccgcacta      1380
     aaatgaattt aaataggaac ctcaaaaata gatgtacaag attagttaag aaactagaac      1440
     ttatcaaact gttagaaacc agtaacaagc catagtctct tttattacaa tttgcttaaa      1500
     aataaggtaa gtgatttagt tatttgacag aatgaaaatt ttacagtgga atgttaacgg      1560
     ttttcataga cgattagaga atatacaacg tatattaaat gatattgacc ctctttgtat      1620
     ttgtatccaa gaaactaatt ttaaaaataa ctactgtgct aagttgaaga attatattca      1680
     ttttttcaaa aatcgatcaa atagcagtat agctagtggt ggagtagcta cttatgtaaa      1740
     atcacacaca ctgcccaaag aggtcgatat tattagccca ctagaagtga tagcaataag      1800
     aatagaatat cctttggcta ttacaatatg taacgtctat ttgcccaata gctgcccctt      1860
     aagtgaaaat gacctgaata acctaaaaaa tcagcttcca acaccttttg tattattggg      1920
     tgactttaat agccaccatt tttattgggg ttcagatcac tgtgatctga ggggtaaaat      1980
     tatatctgac tggttagatg tagacgaaaa tatgattctc cttaatacta atcagcccac      2040
     acactttaat aatagcaatg gtcacaccag cagtatcgat ttagcctttg cttcacgaag      2100
     tatatcaact tactttgact ggtatgcatt agacgatcta tacgacagtg atcactaccc      2160
     tattatgatt acattaaaga tagatttaag ccccgctaac gaaaacgccc cgcaacactt      2220
     caaatatcag atggcagact ggcctaactt tcgttctgat atagaaatta aaattaacca      2280
     actaagtaaa gttacacccg aatctttgac cagaattaat gacttagttg atgaatttaa      2340
     tcaaatactt ctcggttcag cggaaaaaca tatacctaaa acaacaggga aaattaaaaa      2400
     gaaacaagtg ccatggtgga acgacgagtg tgataaatca cttaaagaat ctaaaagagc      2460
     atatagactt tataaaaaag aaaaaagaaa agccgaatat taccaaaaaa gtccaaatcg      2520
     tttggacgat ctccaaaatc ttcaagattc acttaagata gattacaaaa gaaaaagagc      2580
     caagagattc aatgctagaa gaatatttaa agaaagcaga aagaaaagtt gggaaagttt      2640
     tatcacttcc attaatagtt acactccgcc agggattgta tggcaaaaaa taaacgctat      2700
     taatggacaa aaaagcaaaa aacaaacaat agtcttaaaa aacaatgata gacagttaag      2760
     tggtgatcca aaaaataact cggaattatt agcgtctgct tttgctgcaa actctagctc      2820
     taacaattac agccaagaat ttctatcttt taaaaaccaa atagaagaga ataataatgt      2880
     attcgatttt ttggataata gtaactctat caatcaaaat attacaattc atgaactgta      2940
     tttctattta caccaattaa aacactctag ccctggacca gacaacatat ctaacacctt      3000
     aatcaaaaac cttccactcg tggctctaga acgactcctt gacatttaca acttcatttg      3060
     gctcaatcaa gtctttcctg ataagtggcg agaagccatt gttataccga ttccgaaacc      3120
     ggggaaatta ccaaccttaa cttccagtta cagacctata tcgctcactt gcaatttgtg      3180
     taaattactc gaaaaaatcg taagtaatag attgagatgg tatttagaac agaatcaact      3240
     aatatcagca gttcaatttg gttttagaca atataagtca acattagatc atcttgcgta      3300
     tttggaaaac gaaatattaa catcctttgc aattaaaaat aaggttgtgg cggtttccct      3360
     ggatttggaa aaggcttatg aaatggtgtg gaaacacaga gtcttgttac tcctggaaca      3420
     gatgagtatt aaaggtaaca ccctagcctt cgttagaaat tttttagaaa acaggaggat      3480
     tagggttaag atagatggca tcgtttcaga tcctatcaat accgagaacg gtctaccgca      3540
     gggatctgtg gtgagcgtaa tacttttttt agtttcaatt aatagcgtaa cagaggttat      3600
     agaaagacca gtgaagggat gtttatttgc ggatgactta acccttgtat gcagtgggaa      3660
     cagcattaaa ccaacgcaaa cactattgca aaatacttta gataaactaa gtgaatggtg      3720
     tcgacatact ggatttaaat tttcagatac gaaaactgaa tttatcgttt tagcaaaaag      3780
     gaaaaagaaa gaaacagtaa gcttaacaat taataataaa caaattaaag aggtccgtca      3840
     tctaaaaata ttaggtttaa tctttgatca aaaactgaac tgggtcgacc acataaaaaa      3900
     actaaaatca gattgttata atagactcaa cgtcatcaaa attctatcag gaagtagttg      3960
     gggctcagat agcacatgca ttaagaatac atacaaagca ttgataagac aaaaaattga      4020
     ctatggctct attatttatg actctgcatc ttccaatatt ttaaaaaccc tagaaagtat      4080
     acacaacact agtttaagat taagtctagg agccttcaga acaagcccaa taaacagcat      4140
     tctagttgaa gcagaggaaa tgccactagc ttttaggaga aaagagttat gcctgtcata      4200
     tgccattaac catataacaa acaacaaaga ctcatttata ctaaaggacc ctgtaccatc      4260
     ggatatagaa tttaggttac aaccaaccct ttcatctcct ttgaggttaa gaattaaaaa      4320
     atacctcgca gaaataaatt tagattttcc cccggtgttt ccacgtaaac accactacta      4380
     tcctccgtgg caccaatcaa atttcacaat aaatatggaa atagctcaaa ataatccccg      4440
     agacaccaca tcagattata tctacaaaga tcttttctac gaaattaaaa ataatcactt      4500
     agacttcaag atgtactaca cggacggctc agtctgtgaa ggtagatctg gttgcgctat      4560
     tgtatctgaa aattatagtt gcaagaatag actccaagac tatacctcta tattgacatg      4620
     cgaagcagtt gctatactag aatgcttaaa cattattaag acaaacacaa atcacaaaaa      4680
     atatatagtt ttcactgatt caatgtctac cctcatggcc ctttcaaata atcacaacaa      4740
     aaaccccctt attattctga tcaaggaaat tctaaccggg cttatagata acaattattt      4800
     aataaagcta atctggattc ctagtcacca aggcatatct ggaaatgaaa gagctgacac      4860
     agaagctaag agagccacaa agttagccca atgtaattac cttacttcta atatacagga      4920
     tcttaaaaaa cacattaaat ggaagattaa aacactctgg aatagctatt gggtaaaaga      4980
     taataaaagt gctttatatg atataagaaa atccgttttt gaaaaaagga attttcagat      5040
     taataataga aaagatcaag tagttttaaa tagattaaga ataggtcact gtaacattac      5100
     tcacatccat cttattacaa aagaagaaat aaagaaatgt agtcgatgtg atagcaatat      5160
     atctattaag catttactaa ctgagtgccc aatgtttaat gcagaaagac atacttctgc      5220
     cttgcctatg tgtttgtttg actgtttaaa taataatgta aaatgtactt taaaattcct      5280
     gaaaattata gattaccata gattaattta actataagct tatagtggtc gttaatgacc      5340
     attgttgtta aaaagcgacc ttaaataaat aaataaa                               5377
//
ID   I-1_BTa     repbase;    DNA;    INV; 6240 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6240
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 702-702 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1919
FT                 /product="I-1_BTa_1p"
FT                 /translation="MSDPPVDPGDPPGINSQTQNASVSVSADPLVNATESR
FT                 KTIILKKIDDLLYPDNSTGPFVISLSYDGLGNKHATLIGEALYRCNIVGIK
FT                 SIKKINKSLVNIEFVKRDYANNLVSNHKTILPYENARVFIPLNYITRRLVI
FT                 NDVHTDLGIESIGNYLKDKYANVISVRRIFRRNEKGVLTPTPKLELLWEGT
FT                 TRPDFFYIFYSRCKATPYIYNVTTCSNCLNYGHRAEFKGILTCKGLNRCPN
FT                 CSDQHAAHDICPNATKCLHCKGPHKTFDPSCPSXLEQKSIKKIMAFENLSF
FT                 HEATKKLEVLKTENIKLTLNDRLLAIQNKIKAGETISIDDIDPKNFPVLNN
FT                 KYLVLTSNXDQEQTSPDNFQYSIDDLRRPYSEVVLSPSPIRKKVKISEVND
FT                 PVMPSDRWLKNYQIQSSSTQIHKPISDQNKGFWPVPNKGNQTIVSQSHLGQ
FT                 QQLKLAPPPSNKNSSYSNSSTIPTKQTPSARSPVQPPNTGQKQAPQQQYKP
FT                 SSSTKSITPTNLQTKKTNPSQSTINTPSPTLTHSSEPVSSLVLMDIGSETT
FT                 LSP"
FT   CDS           2027..5809
FT                 /product="I-1_BTa_2p"
FT                 /translation="MSPPTLSTLPSNFHILNWNMRSLLSNETDLKILLSDL
FT                 KPDIVLLSETWLNNSSRVKFPGYNIIRDDRDDGYGGLLSLIKIKYKFQRLS
FT                 LDTTSLLNSRIETQSFKLIFDNSSEFFFLNMYINPTSKLLLNNLLTFFESN
FT                 NLVGKPLFWAGDCNAEHPLWGYPSSDPRGEVLVNLSHQLDLFNINSLNPQP
FT                 TRKTAPGRSLRFNDLAFISEPLCRNTYWKALQTGGSDHLPCSYFLNKTISS
FT                 DITSIPSTSSFAPPKLEKLPKLENWSLFKSHLNQLLTCSYYSYDSYINIVK
FT                 EAYANSVRDERLLKTPHSQFVQLPPSSPTTTXPSKPKKYKRIPWWNEECQM
FT                 LKNKRDFLLRDYQRNCSFSTFLEYKKTNAEFKLLVKSTKKKNWREFTDKLN
FT                 HFTPAKEIFEKVRILNRSLTPYQDINFDWIDDLHLTLTPDSQFSKQWNNSS
FT                 SFSNSFEKISKEEFFLAIKKLKKKNPGLDDTLVEFISEAPTKAQNILLDIF
FT                 NNILITKKIPDDWKNVKIFTSLKKDKDPQLASSYRPIGIISAYRKLFERII
FT                 LNRLEFFLEKNHKLSPFQFGFRKGKNVYHNHFQISSHAYKAIGEKAYMATL
FT                 FLDIKNAYNNVNYNILYKKLISIGINPDLARIIFNLISNNSIIVSYFNKTT
FT                 NPRLQPKGLTQGGILSPLLYLIYTSDLFRSLSTSYISEFADDISIYNIHKK
FT                 LDVAMELLNSDLKCINNALSALGLDLSLPKIQAIIFSTRRLPDNLSFNLDD
FT                 FLIPVLPSATYLGLLYTRKMNWLPHINSIKLKISCKLNILSYLHGCSWGIN
FT                 QDVSRKLFMSMIRPILDFGLPIYCRNFNLIERTNILQNSCLRKTLSVLRST
FT                 PTNNLNAESAIPPILNRFNFLTDKLLIRAMSMNHSPIIRNIKMLERSIMNS
FT                 NYWVNKQHPLFLNRWILRNPLLPKILKSDLPCSLMRDPVFQFFQPNTIFLD
FT                 IPKKKLSDHISIQMNFNELMRLKFRNFTQYYTDGAKTAEYTTSAFLSNEFY
FT                 KVYSLSEYNSIFEAETWAILQAVEHSISLNLSNVAICTDSHSVLVNLINQX
FT                 PDLHPLIEETKEILFRYRERNIWLIWIPSHSGILGNERVDQLTKSIHLAQP
FT                 IDNKIFFKQLFPLISQQNFNDWNSDWIACTWKGQRLKSLLPTLSRKPWFYR
FT                 LDWKRSLITNLIRLRIGHGLYPTHLFRINLTTSNLCECGSIGNLEHILFQC
FT                 DKLKNRNTLFSELINKFEIFPPYSTLYLLSVGDLNTLKSIALFLDKNDIHL
FT                 "
XX
SQ   Sequence 6240 BP; 1937 A; 1483 C; 810 G; 2002 T; 8 other;
     cgttcgaacc tccgagctga ctagtgtgta gtgcgtatta cttccgcttc cttatcttct        60
     tggttctcgc tagtttttta ctaccgtttt ttcgtttttg agttttttta gttcctatgt       120
     cttccagcta gttttctttt ttcctcattt ttctagtcaa tttctttggt tatttttgtt       180
     tatccttttc taagtttttg ttaatctatc tccgtcccat gtggtaagtc cgtcttttct       240
     aacctctgtc tcccgatgac agcctaaaaa tgtctgatcc cccagtagat ccaggggacc       300
     cccctggtat taactcccaa acccaaaatg cttctgtctc cgtaagtgcc gatcctttag       360
     ttaatgctac cgaaagtaga aaaacgatta ttcttaagaa aattgatgat ttactgtatc       420
     ctgataactc aactggcccc tttgttatct ccttatctta tgatggttta ggtaacaaac       480
     atgctaccct tataggtgaa gccctttata gatgtaatat tgtcggtatt aagtccatca       540
     aaaagattaa caaaagttta gtcaatatcg aatttgtgaa acgcgactat gctaacaatc       600
     tggtttccaa tcacaaaact attctcccct atgaaaatgc tagggttttc attcccctca       660
     attatattac tcgtagatta gtaatcaatg acgtacatac agacctaggc attgaatcta       720
     taggcaacta tctaaaagat aaatatgcta atgttatctc agttcgacgt atcttccgaa       780
     gaaatgagaa aggtgtttta actcctaccc ctaaacttga acttctttgg gaaggtacta       840
     cccgtcctga cttcttttat atcttctatt ctcgttgcaa agctaccccc tacatctaca       900
     acgttacaac ctgttctaac tgtttaaact atggccatcg tgctgaattt aagggtatct       960
     taacttgtaa aggtcttaat cgatgcccaa actgctcaga ccaacatgct gcgcatgata      1020
     tttgccctaa tgcaaccaaa tgtcttcatt gcaaaggtcc ccacaaaacc ttcgaccctt      1080
     cctgtccttc mttmcttgaa cagaaatcta ttaaaaaaat tatggccttt gaaaacctta      1140
     gcttccatga agcaaccaaa aaacttgagg tgctgaaaac cgaaaatatc aaactgaccc      1200
     tgaatgacag acttctagca atccagaata aaattaaggc aggagagacc atttctattg      1260
     atgacatcga tcccaagaac ttcccggttc tgaataataa atatctagtt ctaacctcaa      1320
     acamtgacca agaacaaaca agtcctgata actttcaata ttctatcgac gaccttagaa      1380
     gaccctattc agaagtcgtt ctttccccct ctcctataag aaagaaagtt aagatttcag      1440
     aggttaacga tccagtaatg ccttccgata gatggcttaa aaactatcaa atccaatctt      1500
     cttctactca gatccataaa ccaatcagtg atcagaataa aggtttctgg cccgttccga      1560
     ataaaggaaa ccaaactatt gtctctcaat cacacttagg acaacagcaa cttaaattgg      1620
     ctcctccccc tagtaacaaa aactcttcat attctaattc atctaccata cctacgaaac      1680
     aaaccccttc cgctagatcc ccggtacaac ctcctaatac tggacaaaaa caagcacccc      1740
     aacaacaata caaaccttct tcttctacaa aatcaataac cccaaccaat ctccaaacta      1800
     aaaagacaaa tccttcacaa tccactatca atacaccttc tcccactctt acccattctt      1860
     ctgaacctgt ctcctcacta gtcctgatgg atattggtag tgagactact ctatctccct      1920
     gatcttcccc cctaaaaccc agttctgttt ttaatccctt tttctttttt tccctttctt      1980
     tttaaccccc ctacttcccc tctttcccct ctaacactct ctccttatgt cacctccaac      2040
     tttatctact cttccctcaa actttcatat cctgaactgg aatatgagat ctttactctc      2100
     taatgaaact gacctcaaaa ttcttctttc tgacttgaaa ccagacatag ttttgttatc      2160
     tgaaacctgg ttaaataact cttctcgagt caaatttcca ggttacaaca ttataagaga      2220
     cgatcgcgac gatggttacg gtggcctctt atcactaatt aaaatcaaat ataaatttca      2280
     acgtctctcc ttagacacta catcactatt aaactcaaga atagaaacac aatccttcaa      2340
     acttatattt gataattcat ctgaattctt ctttttgaat atgtacatca atcccacaag      2400
     taaacttcta ctgaacaacc ttttgacctt ctttgaatcc aataacctgg ttggcaaacc      2460
     tcttttctgg gctggtgact gtaatgcaga acaccccctg tggggctacc cttctagtga      2520
     ccctagaggc gaagttcttg ttaacctttc ccatcaatta gatcttttca atatcaactc      2580
     acttaatccc caaccaacaa gaaaaactgc tccgggccgt agccttagat tcaacgattt      2640
     ggcctttatt tctgaaccac tctgtaggaa cacttactgg aaagctcttc aaacaggtgg      2700
     tagtgatcac ctaccatgct cctacttctt aaataaaaca atctcttcag atatcacctc      2760
     gataccttcc acctcctcat ttgctcctcc taaactagaa aagttaccaa aattggaaaa      2820
     ctggagtttg tttaaatcac accttaatca acttctcacc tgttcctact acagttatga      2880
     tagctatatc aatatagtga aagaagccta cgccaacagc gttagagatg agagattact      2940
     gaaaactcct cattcccagt ttgtccaact ccctccctct tctccgacaa ccactawtcc      3000
     ttctaaaccc aagaaatata aaagaattcc ctggtggaat gaggaatgtc aaatgttaaa      3060
     aaataaacgt gactttctcc taagagatta ccagagaaat tgttcctttt ctactttttt      3120
     agaatataag aagaccaacg ctgaatttaa actcctggtt aaaagtacaa aaaagaaaaa      3180
     ttggagagaa ttcacwgaca aacttaatca ttttactcct gctaaagaaa tttttgaaaa      3240
     agttaggatt cttaacagat cactaacccc gtatcaagac attaattttg attggattga      3300
     tgatcttcat ctaaccctta cccctgattc tcagttctct aaacaatgga acaactcttc      3360
     atccttctct aactcatttg aaaaaatttc gaaagaagaa ttctttttgg caattaagaa      3420
     acttaaaaag aaaaatcctg gtttagatga caccttggtt gaattcattt cagaagcccc      3480
     caccaaagcc caaaatatcc tccttgacat ttttaacaat atcctaatta ccaaaaagat      3540
     acccgatgac tggaaaaacg ttaaaatctt cactagttta aagaaagaca aagatcctca      3600
     attagcctcc tcctatagac cgattggaat tatctctgct tataggaaac tttttgaaag      3660
     aataattctc aatcggttag aattctttct cgaaaaaaat cataaactct ctcctttcca      3720
     attcggattt agaaagggaa aaaatgtata tcataaccat tttcaaattt ccagccatgc      3780
     ctataaggcg atcggtgaaa aagcttatat ggcaactctt tttttggata ttaaaaatgc      3840
     ctacaataac gttaactata atatccttta taagaaactc atttcaattg gcattaaccc      3900
     tgacctagct cgtattatct ttaatcttat ttcaaataac tccattatag tctcatattt      3960
     caataaaact acgaatcctc gcctccaacc taaaggcctg acccaaggtg gtatccttag      4020
     tccgttactt taccttattt acacctctga tttatttaga tccctctcta catcatacat      4080
     ttctgaattt gctgatgaca tatctattta taacatccat aagaaattag atgtagcgat      4140
     ggagttactt aattcagacc ttaagtgtat taacaatgca ctctcagctc taggacttga      4200
     cctttctctc cctaaaatcc aggctattat tttttctact aggagactcc ctgataacct      4260
     ttcttttaat cttgatgatt tcttaatccc tgtacttccc tcggccacat atttaggcct      4320
     cctatatact agaaaaatga attggcttcc acatattaat tctattaaac ttaaaatttc      4380
     ttgtaaatta aacatcttgt catatctaca tggttgttct tggggtatta accaggacgt      4440
     ttctcgaaaa cttttcatga gtatgattcg cccgattctt gatttcggcc tcccaatata      4500
     ctgtagaaat tttaatctta ttgaaagaac taatatactc caaaattctt gcctacgtaa      4560
     aactttaagt gttcttagat caacccctac caacaatcta aacgctgagt cagctattcc      4620
     ccctatcctt aatagattta acttcctaac agataaactt ctaatcagag caatgagcat      4680
     gaatcacagc cccattataa ggaatataaa gatgcttgag agatcaatta tgaatagtaa      4740
     ctattgggtt aataaacaac acccactttt tcttaacaga tggattctga gaaatccttt      4800
     acttcccaaa atcttaaaaa gcgatttgcc gtgctcgctt atgagagatc ctgttttcca      4860
     atttttccaa cctaatacca tcttcttaga cattcctaaa aaaaaactat ctgatcacat      4920
     ttcaatccaa atgaacttta acgaattaat gagattaaaa tttaggaact ttacccagta      4980
     ttatactgat ggcgccaaga cggctgaata caccacgtca gcctttctct ctaatgaatt      5040
     ctataaagtc tattctctat cggaatataa ttctatattt gaagccgaaa cgtgggctat      5100
     tctccaagct gttgaacaca gtattagcct taatctttcc aatgttgcaa tttgtacaga      5160
     ctctcatagc gtattagtta acctgattaa tcaamaaccg gacctccacc ccctcattga      5220
     agaaactaaa gaaatcctgt ttagataccg agaaaggaat atttggctga tctggatccc      5280
     tagtcactca ggaatattag gtaacgaaag agttgatcaa ttgactaaat ctattcattt      5340
     agctcagcca attgataata aaatcttttt taaacaattg ttccccctta tctcccaaca      5400
     aaactttaac gattggaact ctgattggat agcttgtacg tggaaaggcc aaagactaaa      5460
     atctcttctc cctactctct ctcgtaaacc wtggttttat agacttgact ggaaacgctc      5520
     ccttatcacg aatctaatta gacttagaat tggtcatggc ctgtacccca ctcacttgtt      5580
     tagaattaac ttaacaacct ctaatttgtg tgaatgtggt tccattggaa acctagaaca      5640
     tatccttttc caatgtgata aacttaaaaa tagaaatacc cttttttctg aacttataaa      5700
     taaatttgaa atcttcccac cctattcaac cctatatctt ctttcggtcg gcgacctcaa      5760
     tacccttaaa tccatagccc tttttctaga taaaaatgat atccacctct aatctaccaa      5820
     atcttcattc ttacactaat aatttcccta tatttttttt cactcccacc aaccgtctta      5880
     ccctctgttt tattcaatct acccttttgt ccaaacaaat cattctctct macacattca      5940
     atccctaccg tatgttcact ttgtttgttt tccattaccc agtctctggt cataggaagt      6000
     cgctctgccg ggtatcagag cgtgaaaatg gtgaagggtt ctcaccctct ccctactcaa      6060
     ctcctccttt ttatcaatcc ctcacctttt tccatgtttt tagttttttc tcttttcaca      6120
     cctctaaagt cggtaactag tcacctgtaa ccttctctct acacgtatca cactagtcta      6180
     aagttggctg caggtgctta gacacaaagc cataaaacaa cagaaaaaaa aaaaaaaaaa      6240
//
ID   I-1_CQ      repbase;    DNA;    INV; 3415 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3415
RA   Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 106-106 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..3299
FT                 /product="I-1_CQ_1p"
FT                 /translation="MNDGSHTYHRGTTNSCIDISLCSQSLINTLTWCIHTD
FT                 THGSDHNPIEIHACGLSPSTTRRRRWRYEDANWNDYELEIERRLEADREYT
FT                 ISEITQSILKAAEASIPRTSGKPGRRSVYWWNKEVEDAIKTRRKALRKLKK
FT                 LSNESPLRDDALNMFRIARNHARKVMEESKKKSWEEFLDGISNQTSCTEMW
FT                 RRVNALSGKRRTRGLSMEVGGSLTDNPALIAQEIGQYFQKLSATEGYSSKF
FT                 QRLKSTAEENPVSFQIDASNENEDYNKCFSMDELLRALDNAHSKSSGPDDV
FT                 GYPMLKHLPYLAKKSLLNAINKLWLSGSFPEEWRKSIVIPIPKKGQNASSP
FT                 TGYRPISLTSCIAKVAERMVNRRLTTVLEENNLLIDQQHAFRKGRGSGTYF
FT                 ARLGDILDDARTQGHHIDLAALDISKAYNQTXRTGVLRQLQDWGFNGSLAM
FT                 FLKXXLSDRTFQVAIGNTLSDLFVEENGVPQGSVLAVTAFLIGMNNVSLDL
FT                 PKNTHILLFADDILLITHGPTFARNRIKMQAAVRAVGKWADSVGFKIASEK
FT                 CAILHSCSTRHHHWKRPIVLNGVNFPNREKIKILGVTLDRNLNYNQHFREV
FT                 KESCRSRIQLIRTISSRHKTSNRKTIIQVGNSIITSKLVYGIELTCAAFSA
FT                 LVNTLTPVYNEIVRRASGHLKSSPILSIMIESGNLPFPLKAALILAKRTTS
FT                 VMEKIPEESSTLLRKTNEILREKIGSSLPEVAKLPRVQERRWDDVKPKIDW
FT                 KIHHKIKPTDTAAQKRAVFKQRVEQKYQRHQHIYTDGSVSRHGVGMGAYSV
FT                 HWSISKKIDNKCSIFTAETAALIIAVDMTQEDRIYETVIFTDSASALLNVE
FT                 SGKSKNALIQTLESKLENRTDITFCWVPSHCGILGNEKADKLAGEGYRAEA
FT                 WITPLPKQDVNRWINTQLELVWENQWHITRDVFTRKIKGTTKSWDDRGHRT
FT                 EQRIMSRLRIGHTRLTHRHLMGLGPREMCFTCGVPITVEHILVDCPSYTAQ
FT                 RQENLLSNSIREILGHEPESEQRLLKFLRETHLYETI"
XX
SQ   Sequence 3415 BP; 1136 A; 782 C; 711 G; 783 T; 3 other;
     acggccaatc taatttcgca actgaactac aaaagctcat tgatcaactt gaatctcctt        60
     ttttgatttt gggagatttt aacgcccacg acccgctgtg gggcagtctt cgcgaggacg       120
     gtagggggaa ggcaatccgt caagcagccg aaaccaacaa cattattgta atgaacgacg       180
     gtagtcacac ctatcaccgg ggaacgacaa actcgtgtat cgacatcagt ctctgctctc       240
     aaagccttat caacacctta acatggtgca tacacacgga tacgcacggc agtgatcata       300
     atcccattga gattcacgca tgtgggcttt ccccaagcac aacccgaaga cgacgatggc       360
     gctacgaaga tgcaaattgg aatgattacg aattggagat tgaaaggaga ttagaagcag       420
     atcgtgaata cacaatttcc gagataacac aatctatcct caaggcagcc gaagcaagca       480
     taccacgaac cagtggcaaa cccggccgcc gttctgttta ttggtggaac aaagaagtag       540
     aagatgctat taagaccagg agaaaagcgc tcagaaaact caaaaagtta tcaaacgaaa       600
     gcccccttcg agatgatgct ctgaacatgt tccgaattgc caggaatcat gcacgcaaag       660
     taatggaaga aagtaaaaag aaaagctggg aagagtttct cgacggcatc agcaaccaaa       720
     catcgtgtac tgaaatgtgg cgtcgggtaa acgctcttag tgggaaacgc cgtacgcgtg       780
     gactctccat ggaagttggc ggctctttaa ctgataatcc tgctttaatt gctcaggaaa       840
     ttgggcagta ttttcagaaa ttgtcagcta cagaaggtta cagctcaaaa tttcagaggt       900
     tgaaatcaac agcagaggaa aatcccgttt cgtttcaaat tgatgcatcg aacgaaaacg       960
     aagactacaa caagtgtttc agtatggacg aactattacg agccttagat aacgcgcaca      1020
     gtaaatcatc aggaccagat gacgtaggct accccatgct caaacactta ccgtacttag      1080
     cgaagaaatc tctcctcaac gcgatcaaca aattatggct ttccggatca tttcccgaag      1140
     aatggcgaaa aagtattgtt atcccaatcc caaaaaaagg ccaaaatgcg tcttctccta      1200
     ctgggtaccg accaattagt ctcacaagct gcatagctaa agttgctgaa agaatggtca      1260
     accgccgact aaccacagtt ctggaagaaa acaatctcct catcgatcaa caacatgctt      1320
     ttcgcaaagg ccggggatcg ggtacctatt tcgcccgtct aggggatatc ctagatgacg      1380
     ctagaactca agggcatcac atcgacctgg cagctcttga tatttccaaa gcgtataatc      1440
     aaacatngag aacgggtgta ctaaggcagt tgcaggactg gggcttcaac ggaagtctag      1500
     ccatgttcct gaaaaanntt ctatctgata gaacatttca ggtcgccatc gggaacacac      1560
     tgtcagatct attcgtcgaa gaaaatggcg taccacaagg ctcagtccta gcagtaaccg      1620
     ctttcctgat tggcatgaac aacgtctctc ttgatcttcc caaaaacaca cacatattac      1680
     tatttgctga tgatatcttg ttgataactc acggaccaac atttgctagg aaccgaatca      1740
     aaatgcaggc agctgtccga gctgtaggaa agtgggcgga tagtgtggga ttcaaaattg      1800
     ccagcgagaa gtgtgccatc ctgcatagct gctcaactcg tcaccatcac tggaaacgac      1860
     ctatcgtact caatggagta aactttccca atagggaaaa aatcaaaatc cttggtgtaa      1920
     cattggatcg caacctcaat tataaccaac actttagaga agttaaagaa agttgtagaa      1980
     gccgtattca gctcattaga acaatcagca gtcgacacaa aacaagcaac cggaagacaa      2040
     tcattcaagt tgggaacagc ataatcacct caaagctagt atatggaatt gaactaacat      2100
     gtgctgcatt ttctgcacta gtcaacactc taacacctgt ctacaacgaa attgtacggc      2160
     gtgcctcagg ccatctcaaa agctcaccga ttctatcaat tatgatagaa tctggcaatc      2220
     taccttttcc cctgaaagca gcgctgatat tagcaaaaag gacaaccagt gttatggaga      2280
     aaattcccga agaatcaagc accttactaa ggaaaacgaa cgaaatctta agggaaaaga      2340
     taggatcttc actaccggaa gtggccaagc ttccccgtgt tcaagaacgg agatgggacg      2400
     atgttaaacc aaaaattgac tggaaaattc atcacaaaat caaacctacg gacaccgctg      2460
     ctcaaaaaag agcagttttc aaacaaagag tggaacaaaa atatcaacga catcaacaca      2520
     tttacacaga cggatcggta tcccgacacg gagtcggaat gggagcttac agtgttcatt      2580
     ggtcaatatc taagaaaatt gataacaaat gttctatatt tacagctgag actgctgccc      2640
     tcattatagc tgtcgacatg acccaggagg atcgcattta cgaaacagtt atttttacag      2700
     actctgcaag cgctcttttg aatgttgaat ctggaaaatc caaaaatgcc ctgattcaaa      2760
     cattagaatc gaaattggaa aaccgtacgg acattacctt ctgctgggtc ccaagccact      2820
     gcggaatact cggaaatgag aaagctgaca aacttgctgg tgaagggtac cgtgctgagg      2880
     catggataac gccactcccc aaacaagacg ttaatagatg gatcaacaca caactcgaac      2940
     tagtttggga aaaccagtgg cacataacca gagacgtctt cactaggaaa ataaaaggaa      3000
     ccaccaaaag ttgggatgat cgaggacacc gaacagaaca acgcattatg tccagactta      3060
     ggataggaca taccagacta actcatcgac acctcatggg actgggccct agggaaatgt      3120
     gtttcacgtg tggagtacct attactgtgg aacatattct cgttgattgc ccttcctata      3180
     ccgctcaacg ccaggaaaat ttgctttcga actcaatccg agaaatatta ggacacgaac      3240
     ccgaatcaga acaacgcttg ctgaaatttt tacgagaaac tcacctgtac gaaaccatat      3300
     aatcaaatgt atatacaaat tttgtgaaat cttcctctaa ttctatccca tctttctttt      3360
     gaaaaagagg cgaatgcacg tggagtgtaa aacctctata ataaaacaac aacaa           3415
//
ID   I-1_DAn     repbase;    DNA;    INV; 5318 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5318
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 378-378 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1321
FT                 /product="I-1_DAn_1p"
FT                 /translation="MRDPPDIWKEKPSPTSKFLIISRTDDSTFKGVSPFNI
FT                 KKVIDITCGGVVVSCRKLRDGNLLLQTKDNRQAEKLLKLTTILDIPVAVSE
FT                 HRTLNYSKGIIYSNDLRGIDEEEILENLKSQKVSAVRKIMKTFTVEPTETG
FT                 LITLTFDKLDLPDHIYIGYERVQVRPYIPSPIRCNNCLRLGHLQKFCKNTE
FT                 TCFMCSQPSHIDMTIGEKCERGPCCINCTEKKMPDNKHHPRDRNCPVFLSH
FT                 KEVQAIKTLQKVDNRTAWSIYRKRHHHDGSLYASVASSMQHNTSQQQRLTQ
FT                 NTPPTTASTSHHPPSSEDTGRPIIGYDDKEDESMLTDSSIENNRKDSTNSK
FT                 VNILPKNISNRTKRNLINKEKTNSTIITRSKLKILQN"
FT   CDS           1374..5063
FT                 /product="I-1_DAn_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonulcease H."
FT                 /translation="MTLKILQWNINGYTNNYNELLILIKLHNPKVISLQET
FT                 HITLSQQFPIPVNFKMYNTTSIIAKGGVALLIHKDVQHKPIPVGQIFDAIA
FT                 LEIYSKRKVNILSTYIPPSQKFTTSDLENTIPQSSTPSLITGDFNGWNTLW
FT                 GSPKSNRRGRILGEYILKNNYIILNNGQPTHFSTHNSYTHIDLALCSPSLK
FT                 IHCEFKIMDSPQGSDHFPITINIFNKEKKIFNYTSKFLTKKANWEKFENLT
FT                 NCLHSQIPVSTNTNKEHSNINKIILNSAYNSIPQSHPPKTQYNVPWWNKKL
FT                 NILKTKKNRAWRLFNREMNQENLIQYKKANAQFRREIRLSKKESLHALTST
FT                 ISSQSKAELVWNNIRQFCGIHKSTHIHCIQNSNKNSTVTNSKDIATAFSKH
FT                 WSSNSEDQNFSQSFRDAKNNTYRSDTNYLPNKTADFMEQDITDLEFNAALN
FT                 SLKGNTPGNDKINYIMIKHIGKPVKKRLINFFNSILSSFIPQAFKISTVVP
FT                 IHKAGKDKTTIESYRPISLNPCIAKTLDKIISKRLWWFVTSNKLLNSRQVG
FT                 FKRGKSVTDCLLYVDAIISRTLSEKKHASVIALDFEKAFEKVGLHTIKSQL
FT                 NQWGCGPKLTKYVTQFMTSRKIRVRVNHSQSLIQPLHNGIPQGSPLSVILF
FT                 LIAFNSLSDTICRHKNLNFIAYADDYNIIIDLKKEKNLQIDLNRLFEDINN
FT                 WCNTSGASLSITKCKHMHICRKQCCTCQVSTQTHVIESVKELKILGVSFDS
FT                 KYSWKPHINNLTKSLTKSSNIIKFLANDKYNCQPTTLVQIVKSLSLSKIDF
FT                 GLPLYGLAPKTQIKPIKSILNNALRTALGAFRSTPIYNIYVESNITPLETR
FT                 IQHLQAKLSKTIIQSTDTPLKPILDKILKNKITKYRNSAIQKSIISCSNLG
FT                 LPVNPIKPTPKSNPPWNLSPESIDIALSKYRKDQTNLSVFIKEFSDIKSKM
FT                 NNFTFIYTDGSLYNHIPAYAITTETTVLKMAILPTYSSVFTAEIIAILEAI
FT                 EISRTIKGKICICSDSLSALNSIKNIDNNSHYPTLIRESITKLYPKIKILW
FT                 IPSHVGIIGNEFADNAAKYATTAPLVTTKNLNQTDINKYIKSKLSNNSLNL
FT                 LQNTSSWYQTININYTNINDYSKNKEITSLSRRDQTKFIRLRLGHTRLTHQ
FT                 YRMLQSTSNTCQFCNQVAMTLNHILNECVAFNPARNPFPNGNLHSAISNPT
FT                 TSNILRILNFLKKTKTINLI"
XX
SQ   Sequence 5318 BP; 2088 A; 1252 C; 740 G; 1238 T; 0 other;
     cagtttacgt tgggccgtcg atgcgatcag tcgtgtgtct cttccaaatc aaacttctaa        60
     gcgaggcaaa ctcaagtggc aaatattcta acttacatac agttctataa ttagatttgt       120
     tatcagttag tgcaccagca gtgacaatct tcttgcttac actagaagct taaaacgaac       180
     aatgcgcgat ccaccagaca tatggaagga aaaaccttct ccaactagca aattcctaat       240
     catatcaaga accgatgatt caacctttaa aggagtctca cctttcaaca taaaaaaagt       300
     tatagatata acatgcggag gcgtagtcgt cagttgtagg aaactacgtg acggaaacct       360
     tctcctacaa acgaaagaca atagacaagc cgaaaaactc ctaaaactaa caaccatatt       420
     ggacataccc gtagcagttt cagaacacag aaccctgaac tactcaaagg gtataatata       480
     ctcaaatgat ctgcgaggaa ttgatgaaga agagatcctt gaaaacctaa aaagccaaaa       540
     agtgtcagcc gtaagaaaaa ttatgaagac cttcacagta gagccgacag aaactggact       600
     tataactcta acatttgaca agctagacct ccccgatcac atttacatag gatatgaaag       660
     ggtccaagtt cggccttata taccatcccc aatccgttgc aacaactgcc tacggctagg       720
     tcacctccaa aaattctgta agaacacaga gacctgcttt atgtgcagcc aaccttccca       780
     tatcgacatg acaattggag aaaaatgcga acgtggacct tgctgcatca actgcactga       840
     aaaaaagatg ccggataata aacaccatcc cagagacaga aattgcccag tatttctttc       900
     ccataaggaa gtgcaagcca tcaaaaccct ccaaaaagtg gacaacagaa cggcctggtc       960
     aatctacagg aagagacacc atcatgatgg gtctctatac gcatcggttg caagctcaat      1020
     gcagcacaac acctcccaac aacaaagatt gacacagaac acgcccccga caacagcatc      1080
     aacctctcac cacccaccat catcagaaga cactggcaga cccattatag gatacgacga      1140
     caaggaagat gaatcaatgc taacggactc gagtattgaa aataacagaa aggatagtac      1200
     aaacagtaaa gtaaatattc tccctaaaaa tataagcaac agaactaaaa gaaatcttat      1260
     caataaagaa aaaacaaaca gcacaattat aacaaggtca aagcttaaaa tattgcagaa      1320
     ttaactaaat actaaagact acagattaaa tataaataaa tctagacgta aatatgacac      1380
     ttaagatatt acaatggaac attaatggct acacaaacaa ttataatgaa ctgctaatcc      1440
     taatcaaact acacaatccc aaagttatct cccttcagga aacacacata accctctccc      1500
     aacaattccc catccctgtc aatttcaaaa tgtacaacac aacgtcaatt atagcaaaag      1560
     gtggagtcgc cttattgatc cacaaagatg tccaacataa accaattccg gtaggacaaa      1620
     tttttgatgc catagcttta gaaatctact ccaagcgaaa agttaacatc ctatccactt      1680
     atattccacc ttctcaaaaa ttcaccactt cagatttaga aaacactatt ccacagtcat      1740
     caacaccttc gctgatcact ggtgatttta acggttggaa tactctgtgg ggctccccca      1800
     agagcaatcg caggggtagg attctcggtg aatacatttt aaaaaacaat tatataattc      1860
     taaacaatgg ccagcctacc catttctcca cccacaactc ttacacccac atcgatcttg      1920
     ccttatgctc tccaagcctt aaaattcact gtgagtttaa aataatggac tcaccccagg      1980
     gtagcgacca tttccctata acaatcaaca tatttaacaa agaaaaaaag atatttaatt      2040
     acacaagcaa atttctaacc aaaaaagcaa attgggaaaa atttgaaaat cttacaaatt      2100
     gtctccatag ccagatccct gtttcaacaa acacaaacaa agaacacagc aacataaaca      2160
     aaataatact aaatagcgct tacaatagca tcccccaatc ccatcctcca aaaactcaat      2220
     acaatgtccc atggtggaac aaaaaattaa atatcttgaa aactaaaaaa aaccgagcat      2280
     ggagattgtt taatagggaa atgaatcaag aaaacctaat acaatataaa aaagccaacg      2340
     cccagttcag aagagaaatt cgcctcagta agaaagaaag tttgcacgca ctgacctcca      2400
     ccatttcaag ccaatccaaa gcggaattag tctggaataa catcaggcaa ttctgcggaa      2460
     ttcacaaatc aacacacatt cattgtatcc aaaatagcaa taaaaactca acggtcacaa      2520
     attcaaaaga catagctaca gccttttcca aacactggtc atctaattca gaggaccaaa      2580
     acttctccca gtcatttaga gacgccaaaa ataacacata cagatcagac accaactatc      2640
     tacccaacaa aacagccgac tttatggaac aagacattac ggaccttgaa tttaatgctg      2700
     ctttgaacag tctaaagggg aacaccccag gaaacgataa aataaactat ataatgataa      2760
     agcacatcgg aaaaccagtt aaaaaaagat taataaactt tttcaactca atcttaagtt      2820
     cttttatccc tcaggctttt aaaattagca ccgtagtccc aattcacaaa gcaggcaaag      2880
     acaaaacgac aatagaatca tacagaccaa tctcccttaa cccatgcatt gcaaaaacgc      2940
     ttgataaaat aatttccaaa cgactgtggt ggtttgttac ctctaacaaa cttctcaaca      3000
     gccgtcaagt tggatttaaa agagggaagt ctgtgacaga ctgtctacta tatgtagacg      3060
     ctatcatcag caggaccctt tcagaaaaaa aacacgcctc ggtcatagca cttgacttcg      3120
     aaaaagcttt cgagaaggta ggacttcaca ccataaaaag ccaactgaac caatggggtt      3180
     gcggacccaa gttaacaaaa tatgtaacac aattcatgac aagccgtaaa atcagagtca      3240
     gagtaaacca cagtcaatcg ctaatccagc cactccacaa cgggataccc cagggttccc      3300
     cattgtcggt aatattattc cttatagcat tcaatagctt atcagatacc atttgcaggc      3360
     ataaaaattt aaacttcatt gcatatgctg atgactataa cataataata gatctcaaaa      3420
     aagaaaagaa cttgcaaatc gacttgaacc gcctctttga agacattaat aactggtgta      3480
     atacatcagg agcttcattg tctatcacaa aatgcaaaca tatgcatatt tgcagaaaac      3540
     aatgctgcac ttgccaagta tccacacaaa cacatgttat tgaatcagta aaagaactaa      3600
     aaatattagg agtatccttc gactcaaaat atagttggaa accacacatc aataatttaa      3660
     ctaaatctct aactaaatcg tcaaatataa taaaattcct agcaaacgat aagtacaatt      3720
     gtcaaccaac aaccctagtc caaatcgtga aaagcttatc cttatcaaaa atagatttcg      3780
     gcctgccact atacggacta gcaccaaaaa cacaaataaa accgatcaaa tctatactca      3840
     acaacgccct tcgaaccgcg ttaggagcct tccgctcaac acctatttat aatatctacg      3900
     tcgaatccaa tattacccct cttgaaacta gaatacagca ccttcaagcc aaattatcaa      3960
     aaactataat tcaatcaaca gacactccgc tgaaaccaat ccttgacaaa atcctaaaaa      4020
     acaaaataac aaaatacaga aactcagcca tacaaaagag tatcatctcc tgtagcaacc      4080
     ttggcctccc ggtcaaccca ataaaaccca cgccaaagtc aaatccgcca tggaatctaa      4140
     gtcctgaatc aatagacata gccttaagca aatacagaaa agaccaaaca aatttgtcag      4200
     tattcataaa agaattttca gacataaaat caaaaatgaa caacttcaca tttatttata      4260
     ctgacggatc cctttacaac catatacctg catacgccat aaccaccgaa accactgtcc      4320
     ttaaaatggc catacttccg acctactcct cagtctttac tgcagaaata atcgctatat      4380
     tagaagccat cgagataagc cgcacaataa aaggaaaaat ctgcatctgc tccgactcac      4440
     tgtctgcctt aaattcaata aaaaacattg acaacaactc acattacccc acattaatta      4500
     gagaatcaat tacaaagctc tatccaaaaa taaaaatctt gtggattcca agccacgtgg      4560
     gaatcatagg aaatgaattt gctgataacg ccgctaaata cgcaactaca gcacctttgg      4620
     tcacgacaaa aaatctcaac cagaccgata taaacaaata cataaaatcg aagctatcta      4680
     acaattcact aaacctatta caaaacacat caagctggta ccaaactatt aacataaatt      4740
     atactaacat caatgattac tccaaaaaca aggaaatcac cagtctatca agacgagatc      4800
     aaactaaatt cattagatta cgtctagggc atacaagact cacccatcag tatagaatgc      4860
     tgcaatcgac atctaacacc tgccagtttt gcaaccaagt tgcaatgact ttgaaccaca      4920
     tacttaatga atgcgtagca tttaatcctg cccgaaaccc cttcccaaat ggtaacctcc      4980
     attctgccat ttcaaatcct acaaccagca acatcctgag aatcctaaat tttcttaaaa      5040
     aaacaaagac aatcaatctt atctaataat taagcgtcca acaacacaat agaaataaga      5100
     aaactaattt tcgaattata tagaattgtg caaaaacttg aatttcacat agactaatac      5160
     agacattagg attaagtaaa taacaaaaaa tgtaactacg aaaaacaaaa aataaaataa      5220
     atgagccagc cgaaagcctt agtagctatg gctgcaacgc ccccccccct gtagctttag      5280
     ttttaacttt aagctaacag aatgtaaata aataaata                              5318
//
ID   I-1_DAzt    repbase;    DNA;    INV; 5448 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5448
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 883-883 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           193..1485
FT                 /product="I-1_DAzt_1p"
FT                 /translation="MHEPPDISKFSKTNNNAQLNEPKYIVLKRNDNESFEK
FT                 VSPFVIKKTIDYACGGEVEMCKKIRDGSLLIKTKTKLQALKLLRLTKMTDI
FT                 DITAAEHKTLNFTKGVIYCNVLRYITENEILQELKAQNVSEVRKILKKQPN
FT                 NINQEGNALTETGLIIITFATHKLPEKINIGYEIVRVRPYIPLPLQCKNCL
FT                 RFGHPATICKSPETCKNCSEGNHTNEGELCKKMRNCLNCKNNPEVDYQHSP
FT                 LDRKCPAFLKQQELTAIKITEQVDHKTALDIYHNRHSQQLKNTYAKTAAQS
FT                 TSLTTTTHAPTHTSPNSPCTHTQTSATQQLRNSPSTSTSHNHNAPTTQSTT
FT                 ARSTETIQLQKEHQQQHIVAEDMETDSNTPNTENKSHTLQPTEDIKLRIFL
FT                 KDKSSPLSTNFKAPKTKTKTKPRTAKNKNQHSDSESI"
FT   CDS           1574..5257
FT                 /product="I-1_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MLKILQWNIRGYTNNYNELLVIIKKYSPQIICLQETH
FT                 HFNTNTPSPVPVNYHIYSNTASNRFGGVATLVHKSIQHSQSNQSRDLETLG
FT                 IEIVSKTKINILSTYIPPNKPFSLKCLNDHFETHNTNQIILGDFNSWHHSW
FT                 GSPQDNRRGRILSKFFQTANLTILNDGSPTHFSTHNTFTHIDLSLCSPQLT
FT                 PFTNWKIVDDLHGSDHFPILMSLFPQPQTTNFSRPFFKIKEADWPRFKKIT
FT                 NDLSELIPKSTNINREAATINKIILQAAHHSIPQTTPHRFSKNTPWWNKTL
FT                 TKLRANKFKTWQNFKRSNSTENLLSYKRANALFRRELKLSKAKAMNDFTST
FT                 IDPNTPSDKIWASIRRLCGLNPTKTIHCITDTTNNLHTTETTQIAHLFAQH
FT                 WSDHSKDENFNQNFTANKYSDSTTTVIPCPTAQTIELPITQIELLSALHSL
FT                 KGTTPGLNRISYPMIKNTSDLLKTRITNLFNIIFNNFIPQSYKTNLVIPIQ
FT                 KPNSNKTIIANYRPISLNCCLSKTLEKIIAKRLWWFVTQNNLIHPNQSGFK
FT                 HGKSVADGLLFADHLITRSLRSKKHTSVIALDFSKAFDRVGVHTVIDQLNT
FT                 WKVGPKIINFVKNFMSNRQIRTKIKNIISRPYPLHNGIPQGSPISVILFLI
FT                 AYNKLSHIISLQKEIQFSAYADDFFLIIPLNRQKNQTYNLDNLFSNIHEWC
FT                 SYSGASLSLQKCQHLHICRKQNCTCNISCNNTPIPSVTSLKILGLTINNKY
FT                 RWDSHIKQIQPALNNKLNVIKCLSSPKLNCNTHTLLNITKATLISKIDYAL
FT                 FIYGHAPKSTINKLKPLFNAAIRTSLGALRSTPIPNLLFESNIPTIEQKRD
FT                 LITTKAYKTVLNSSNSPLHKYIKKNGNIKISKLTSTLEKVIISCKKHNIPY
FT                 LPFPKKAITPQWQFIPSLINTTLQKFSKPNTPPSTYRQQFLELKDKYHNHK
FT                 FIYTDGSLQNSTATFAITTENEILKRCILPHYSSILSAETIAILEAIKLVQ
FT                 KRKGKYIICSDSLSSIKSISNINNNNLYPITIRTLLTKIAPKIKLLWIPSH
FT                 CGIEGNELADTTAKSTYHMPLHYTLNLNTTDINKFLANDLAEKIKQNIDLC
FT                 NRWYQQLNPNQTYTNLYLKSTNKKGITRSDQIKIIRLRLGHTRFTQQHYYN
FT                 PGNIIPCPNCHTTDELNIKHILTNCTATSHLKNQIFQNTCPISILENPTIE
FT                 NISKIIEFLKKTNIYHLL"
XX
SQ   Sequence 5448 BP; 2203 A; 1491 C; 626 G; 1128 T; 0 other;
     cagtatcact tcaacctctc aagagacaag acgtgctgca actgtataag aaccgctaaa        60
     cgcaaacgca aaatcttacc agcaaacgag tgacaaacaa atattaaaac caaaagagaa       120
     aacaaaaaaa aaaaaacaaa aacaaacaca caacaaacag ttacaccggg cttgagccca       180
     aaaacaataa ccatgcacga accaccggac ataagcaaat tcagcaaaac aaacaacaac       240
     gcacaactaa acgaacccaa atatattgtc ttaaaacgaa atgataacga atcgttcgaa       300
     aaggtatcac catttgttat taaaaaaacc atagactatg cctgtggagg ggaagtggaa       360
     atgtgcaaaa aaataagaga cggctctctt cttataaaaa ctaaaactaa actgcaagcg       420
     cttaaactac ttaggctaac caaaatgaca gacatagaca ttactgcagc agaacacaaa       480
     acactaaact ttacaaaagg cgtaatatac tgcaatgtac tacgttacat aaccgagaac       540
     gaaatactac aagaactaaa agcgcagaac gtatcagaag tacgaaaaat tctaaaaaaa       600
     caaccaaaca acataaacca agaaggcaac gcactcacag aaacgggact tattataata       660
     acattcgcaa cacacaaatt acccgaaaaa attaacatcg gatacgaaat cgtccgagtg       720
     cgaccctata tcccccttcc ccttcaatgc aaaaattgtc tacgttttgg tcaccctgcc       780
     accatctgta agagtccaga aacatgcaaa aactgctcag aaggaaatca cacaaacgaa       840
     ggggaacttt gcaaaaagat gaggaactgc ctaaactgca aaaataaccc cgaagtagac       900
     taccaacata gccctctcga ccgcaaatgc ccggcattcc ttaagcaaca ggaattaact       960
     gcaataaaaa tcaccgaaca agtcgatcac aaaactgcgc tggatatata ccacaataga      1020
     cacagccagc agttgaaaaa tacctacgct aaaacagctg cacaatcaac atcgcttaca      1080
     acaacaacac acgcaccaac acacacatca cccaattccc catgcacaca cacacaaacc      1140
     agtgccacgc agcagctaag aaactcccca tctacttcca catcccataa ccataacgca      1200
     cccacaaccc agtcaaccac agcacgatca accgaaacaa tacagctaca aaaagaacat      1260
     caacaacagc atatcgtagc agaagacatg gaaacagaca gtaacactcc caatacggaa      1320
     aacaaatctc atacattgca gcccaccgaa gatataaaac taagaatatt ccttaaagat      1380
     aagtctagtc ccctatctac taactttaag gcccccaaaa caaaaacaaa aaccaaacca      1440
     agaacagcta aaaacaagaa ccaacacagc gacagcgaat ctatttaaaa ctaaaatcct      1500
     atacttaact ttagcttaaa tccaaaacaa aaccaattaa caaccttaaa aacttaaact      1560
     caaaactata gcaatgctca aaatactaca atggaacatt agaggataca caaacaacta      1620
     caatgaactc ttagttataa taaaaaaata ctctccacaa atcatatgtc tccaagagac      1680
     tcaccatttc aacacaaata ccccctcccc cgtcccagta aattaccata tttattccaa      1740
     cacagcatcc aaccgatttg gtggagtagc cacattagtc cacaaatcca tacaacattc      1800
     tcagtcaaac caatctcgag acctggaaac actcggaata gaaattgtat caaaaacaaa      1860
     aattaacatc ctttcaacat acatccctcc caacaaacct ttctcactca aatgtttaaa      1920
     cgaccacttt gaaacgcaca ataccaacca aattatccta ggcgacttca atagctggca      1980
     ccacagttgg ggatcacccc aggacaacag aagaggaaga atattatcaa aatttttcca      2040
     aaccgccaac ctcactatac tcaacgacgg ctccccaacc cacttttcca cacacaatac      2100
     attcacccac atagaccttt cgctatgctc tccccaactc acccccttca ctaactggaa      2160
     aatagtcgac gaccttcatg gtagcgatca tttcccaatc ctaatgtcct tgttcccaca      2220
     gccacaaaca acaaacttct ctcgaccctt tttcaaaata aaagaagcag attggccacg      2280
     attcaaaaaa ataactaatg atttaagtga actgataccc aaaagcacga acatcaatag      2340
     agaagcagca accataaaca aaataattct acaagcagca caccacagta taccacagac      2400
     aaccccgcat cgcttcagca aaaacactcc ctggtggaac aagaccctaa ccaaacttag      2460
     ggcaaataaa tttaaaacct ggcagaactt caaacgttcc aacagcacgg aaaatctcct      2520
     cagttataaa cgagctaacg ctctcttccg aagagagctg aaattatcca aagctaaagc      2580
     catgaacgat ttcacgtcca caatcgaccc caacaccccc tcagacaaaa tctgggcaag      2640
     catccgacgt ctctgtggac ttaaccccac taaaaccatt cactgtatca cagatacaac      2700
     caacaattta cacacgacag aaacaaccca aatagctcat ctttttgctc aacactggtc      2760
     agaccactcc aaagacgaaa actttaacca aaacttcact gccaacaaat attcagactc      2820
     aacaactaca gttataccct gtccgacagc acaaacaata gaattaccaa ttacacaaat      2880
     agaactacta tctgcattgc actcccttaa aggaacaact cccggcctta accgaatatc      2940
     gtaccctatg atcaaaaaca cctccgactt actcaagaca agaatcacta acctatttaa      3000
     tattatcttc aacaacttca tcccgcaatc ctacaaaacc aacctagtca tccccataca      3060
     aaagcccaac tcaaataaaa caataatagc caactataga ccaatttcac taaactgctg      3120
     cctatccaaa accttagaaa aaataatagc caaacgccta tggtggttcg taacgcagaa      3180
     taaccttatc catcccaacc aatccggatt taagcatggc aaatcggttg cagacggtct      3240
     gctcttcgca gaccatctga taaccaggtc gctgagatcc aaaaagcaca catctgtcat      3300
     cgcccttgac ttctcaaagg ctttcgacag agtcggagtg cacaccgtaa ttgaccagct      3360
     aaacacctgg aaagttggac caaaaataat aaacttcgtt aaaaacttta tgtctaacag      3420
     gcaaataaga acaaaaatta aaaacattat aagccgccca tacccactcc acaatggtat      3480
     cccccaagga tcaccaatat cggtcattct ttttttaatt gcctacaaca aactctcaca      3540
     catcatcagc ctgcaaaaag aaatacaatt cagcgcttac gccgacgatt ttttcctaat      3600
     tattcccctc aatagacaaa aaaaccaaac atacaattta gacaacctct tctctaacat      3660
     tcatgaatgg tgttcatatt caggagcatc actttccctc caaaaatgcc aacacctcca      3720
     catttgccga aagcagaact gtacctgcaa catatcgtgc aacaataccc cgatcccctc      3780
     agtcactagc ctaaaaatat taggactaac aataaacaac aaatacagat gggactcaca      3840
     cataaaacaa attcaaccag ccttaaacaa caaacttaac gtcattaaat gcctatcaag      3900
     ccctaaacta aattgtaaca cacacacact tttaaatata accaaagcaa ctctaatatc      3960
     aaaaatagat tatgcacttt ttatctacgg tcacgcccct aaatcaacga ttaataaact      4020
     taaacctttg tttaacgctg caatccgcac atcccttgga gcactacgct caacccctat      4080
     acccaatttg ctcttcgaat caaacatacc aacaatagaa caaaaaagag accttatcac      4140
     aaccaaagcc tacaaaacag tactaaacag ttcaaactca cctcttcaca aatatattaa      4200
     aaaaaatgga aacataaaaa taagtaaatt aacgtcaaca ctggaaaaag tcattatctc      4260
     atgcaaaaaa cacaacattc cctacctccc atttccaaaa aaagcaatca ccccccaatg      4320
     gcaatttatc ccttccctta tcaacactac actacaaaaa ttcagcaaac ccaacacacc      4380
     accaagcaca tacagacaac aatttcttga actcaaagac aaataccaca atcacaaatt      4440
     catatacacg gacggatcct tacaaaacag cacagcaact tttgccatta ccaccgaaaa      4500
     cgaaatcctt aaaagatgca tcctacccca ctactcatcc atcctatcag ccgaaaccat      4560
     agccattctt gaggcaataa aattagtcca aaaaagaaaa ggaaaataca tcatttgctc      4620
     cgactccctc tcatcgatca aatccatctc caacatcaac aacaataatt tatatcctat      4680
     taccataaga accctcctca ccaaaatcgc ccctaaaata aaactccttt ggatacctag      4740
     ccactgtggt attgaaggta acgagctagc cgacactaca gccaaatcca catatcatat      4800
     gcccctacat tacaccctca accttaacac aacagacata aacaaattcc ttgccaatga      4860
     tctagcagaa aaaattaaac aaaacataga tctctgcaac agatggtacc aacagctaaa      4920
     cccaaaccaa acatacacaa acctgtacct aaaaagtacg aataaaaaag ggatcacacg      4980
     tagtgaccaa attaaaataa ttaggctcag actaggacac acacgattta cacaacaaca      5040
     ctactacaac cctggcaaca tcataccctg ccctaactgc catacaacag acgaacttaa      5100
     tattaaacac atcctcacta actgcaccgc aacttcccac ctcaaaaacc aaatcttcca      5160
     aaacacatgc cccatatcca tcctcgaaaa cccaactata gaaaacatct caaaaattat      5220
     tgaattccta aaaaaaacga acatatatca cctcctataa ccctaattaa actaaacaat      5280
     atatatatgt atgtaaatat gtaaatgtaa gatgtaaatg taaatatgta aatacactag      5340
     cccctaaata cctctaacaa gccgaaggcc tttgcagcca gcgctttaga tattaagtta      5400
     gtgttaattt aaattatagc taacttttat aaataaataa ataaataa                   5448
//
ID   I-1_DBi     repbase;    DNA;    INV; 3568 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3568
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 925-925 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3568 BP; 1434 A; 952 C; 396 G; 784 T; 2 other;
     tcatcacaga actgctctgg gtatatactt tgagcgacac ggatacaaaa caagaaactc        60
     ttatgcaaac acactccacc acaaccacaa taagaacccg atctccaaat acgctcaccg       120
     cgaaccacac tccggcaccg gaaaaaattc tccaaaacca caaccaacac gaccaggacg       180
     acaccgaagc catggaaacg gacaamatca accccaccag aatatcacgc gacagcgaat       240
     cggtttaaaa gccacagatc tcccctactt taaagttcaa ccttagaact tcttacacta       300
     ccagaatgtc actaatttta atccaatgga atattcaagg atatacaaat aactataata       360
     atctccttat cctgattaaa aamtactctc cgcatatcat tacacttcaa gaaacacaca       420
     tacaatacac taacaatata ccaactccaa taaattacac actactaaca aacatagcca       480
     ccaatagatt tggcggcgta gcgctattag tacacaagtc aattcaatat tctatagtaa       540
     acgttccaaa cgaccttgaa gctctagcaa tacacataaa atccaagaag aacatgcaca       600
     taaagacaac atacattgcc ccaaacagaa ccgtcacaaa ccaaatgctt gaagacactt       660
     tgtacaataa ccaaacacca tcacaataat tctaggagac tttaacggat ggcaccctgc       720
     ctggggttcc ccgaaaacta attctcgagg aaaaacaata caacgattta ttgacaacac       780
     acagctaatc ttactaaatg acaaatcccc cacacatttc tcaacacaca acacatacac       840
     gcatatcgac ctttcacttt gctcagcaac acttgcccca cacgccaagt gggaaatact       900
     taatgatctc cacggcagcg accattttcc gatagttatc tctctattcc ctccaaacac       960
     gataaacaaa ttttcaaaac cattttttat attaaaaaaa gccaattggg agcaattcga      1020
     gactctcaca cacaaaaata acgaaatatt ccccacttca ctaaacgtca acaaagaagc      1080
     cgcacaactt aacaaaatta tattacatag cgcaaacatt tccatcccac aaacctcagt      1140
     aaatacaaag cccttcaagg ttccctggtg gaacaaaaaa ctagcacagt taaaaaagaa      1200
     aaacaattag cttggaaagc acttaatcgc aaacatcaac cttacaaatg ttataaacta      1260
     cagacgctta aacgccaaat acaagttcga aattaaaaaa gaaaaagcga agcttccagc      1320
     tcctttacat ccaccataca accagaaact ccttcatcta aaatatggag caacataagg      1380
     cgcttctgcg gtcttaaccc aagcaaacaa attcacgcca tacttaatcc caaaaacaac      1440
     acaacaacaa cagatactct caaaatagcc aacaccctct cgcaacactt ctcagagctc      1500
     tcaagcgacc taaacttctc agacgaattc cgaaataaca aatataaaat caacacaaac      1560
     aattatacac cgacctcaac agccaaaact atcgaggaaa acataactca ccttgaatta      1620
     attgcagcac tacaaacact gaaaggatcc actccaggat taaacagaat ttcttacgaa      1680
     atgatacgca acagctccct taccaaaatt atacaaacca attcgtcttt aaaaaaggca      1740
     aatcgacttc ggatagtctc ctatacgtag accaatctct tgacttttca agagcctttg      1800
     atcgagtagg tgtgcacact ataattgatc aactccagaa tggaaaacag gcccaaagac      1860
     aatcaattat gtcaaaaatt tcatgctcaa acgtaaaata attgtcagag tcggtccgaa      1920
     catgtcaaat tcactcccat tatccaatgg tatcccacaa ggatcaccta tatcggtaat      1980
     cctatttctc atcgcataca ataaactctc aaacataata tctttacaca gagaaattaa      2040
     atttaacgca tacgccgatg actttttcct cataataaat ttcagaaaca acaaaaacct      2100
     taatttcaac ctagacaact tattacatga cataagcagc tggtgctcat actcaggggc      2160
     atctctatcc ttagctaaat gccaacacct ccatatttgc caaaaacaca attgcactag      2220
     caccataagc tgtagcaata caccaataca gcaagtaaca gcactcaaaa tcttagggat      2280
     aaccataaac agtaaataca aatgggacac acacataaaa tcacttcttc catcactaca      2340
     ccaaaaattg aatatcataa aatgcctctc caacctcaaa ttcaattgta acacacaaac      2400
     actactccac gtcgcaaaag caacagtcat agcaaaaatg gaatatggcc tgtttctata      2460
     cggacaggct ccgaaaagcg tgctaaacaa attaaaaaca ccctttaaca ctgcaatccg      2520
     tctagccctt ggcgcctacc gaaccacacc cataaataac ttgctatacg aagccaacgt      2580
     cctcccatta gagcaaaaac gagaccttca aacagccaaa ctcacaaaaa acttatattt      2640
     tccaaagata caccaataca caaacttgtc aaacaaagac aatcaaaaaa gaacccatca      2700
     accatagacc gcacaataaa cctttgtcaa gcactaaacc taccctacga accagttaaa      2760
     ctacacaaat accagccacc ttgggatctc ccaaacctca tagacacaac atttagagag      2820
     cacaagaaac aaaccacacc accagataca tacaggaaac tatacgaaca taccaaagac      2880
     agccataaaa cacacaaatt catatttacg gacggatcaa aaagctagcc gaccaaacag      2940
     caaaataaac atgcaatatg ccccttattt ataccccaaa cattaattta acagacataa      3000
     acagacactt aaaactagaa ttcctaacaa gaaataaact aaacatagaa cactgcaatc      3060
     aatggtataa aaacattaac aaagacaatt caaacatcga caattattgc agatccttcc      3120
     atcccaaatc gagcagactc gatcaaatta aaataacacg ccttagacta ggccacacaa      3180
     aacttacaca cgagcactac tttaatcaaa accaaacctc accctgcccc ttctgccaag      3240
     gcgacaatac cataccccac ctattaaatt catgcccatc actcctccct actaaactat      3300
     ctatcttcaa aaatacaaac ccattaaatc tccttaacga actcaaccct gataatttag      3360
     aaaaaatctt aactttctta aaaatttcaa acctatacca caaaatttaa aaatacccaa      3420
     aatgtacata aataaaattt accaactatg tagcctaaat acaacaatac gacattaacc      3480
     ttaaaagccg aaggccttgc cgccagcgct ttaccaacta agttagtcta gttttgtaaa      3540
     cttctctatc tttaataata aataaata                                         3568
//
ID   I-1_DBp     repbase;    DNA;    INV; 4216 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4216
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 701-701 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..4029
FT                 /product="I-1_DBp_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSITLLQWNMNGYFNNYHELQLLINDSNPDVICLQET
FT                 HINTNLTNIAYPKQFIGYFYNFSSNTYAKQGVSLLVRKDIPHKPIPINSNT
FT                 CSLGIELLSHPKICIFNTYIPPSQFVAANEILKIVDLSSKPILYVGDFNAW
FT                 SPLWGSSLHNSRGLQIEEVINKSTLTLLNDGSATHHSTHNSFTAIDLTLAS
FT                 ASLFPFCKWSVLDSLYGSDHYPLKTKIQFRTNPINIPPSPKFKLDKANWDL
FT                 YRAKCRDNFNFPTTHDLNLFAAKIIKGIKASANLAIPQTKPSLHQRNVPWW
FT                 SKALQDLRQQKQSLWHAYKQTQSTAALISYRKANALFKYNSKKAKRESYER
FT                 FTSNITPLSSTKKTWADLNRLIGNFPSNLRTIKYNNENLHHSVDIADAFGN
FT                 FWSDYSKDGNFSNQYKARKEVILSQEYTPTKLSTASTDLDSNFSLSELEYA
FT                 LQHAKGKTPGIDRISYPMLKQLPSEAKHRLLEMYNAMLARGTYPHVWKSAV
FT                 IIPILKPNKPTHEITSFRPISLLPCLSKTLEKMLAKRLMWFVTKHKLISPH
FT                 QTAFKQQHSTIDSLLHLHHYASDALSTKNHVTILATDFERAFDRVGVHTVL
FT                 DQLSRWGVGQKTFNLAKAFMINRSIRVRVNNTLSKFYTLHNGIPQGSPLSV
FT                 VLFMIAFQSLNNIILRHKQIKLAIYADDAIIFSKCKNTTALNNKFKEVLNE
FT                 IQIWGNTSGATLAVNKCKVFHICKNKRCTYPPLSHNDIDIERVSFLKILGL
FT                 TFDKRLTFKQHCSELRKKLIKRLNIIKFLTSKRSLIHRTTLIQATRALLLS
FT                 IIDYGLPIYGWCAPSHLRKILPPYHAAVRRSIGAFPTTPTKCILAEAGLPD
FT                 IITRVTQTTFKLIPKLMCSTNSILLKDYKVASKHRRKFKVQSTIRRCITFT
FT                 KRHNIGSPYRWNKVIPSPPWKIRSTAIDTTLHDFQKSKTPITTFKQLFEEV
FT                 THKYSDRKWLYTDGSKSDATTTFAVVDQHGLIVSWGRLPHHFSVFAAEAVA
FT                 IVKAIKFALELKGSYVICSDSLSTLQGVQNFYNNNNLLSEIRHLCIKNISK
FT                 IQLLWVPAHIGITGNEMADNAAKLAGRAPCLTIIPGVQQDIWKNIKNILRD
FT                 IELEDWSSFNHWYKQSNPDKKDIKFPTSLNGRECAILTRLKTGHTNLTHKH
FT                 ILNGETRPNCPNCGEELSVKHLLDTCGHYQNSRTHLFGLTPPSNLLSDLTA
FT                 ANSKLLLSFLRNCKITHLI"
XX
SQ   Sequence 4216 BP; 1392 A; 1078 C; 635 G; 1110 T; 1 other;
     ccccgaaaaa aaacccttac cccctacccc cttcctccca cctcttccca ctccccgatc        60
     ccccagtccc ctacccccac aaccccttat cagccaaaga aatccacttc acttgctcat       120
     aacaagtata acttatctcc tgcatcacat gcatacttac aagaaatcca cgctgagtac       180
     gaaagtaaca gccgagcaac atcttcaaat caaaaaccaa aaaaccaact acacacaata       240
     ttaatttaaa tacccacgaa tctgacgatg ctatgagtga tacatactag ctccatcaat       300
     ccaaaccaaa ccaaataaca ccctctctct ctcttcctac ttatgtccat tacactatta       360
     caatggaaca tgaatggtta ctttaacaat taccatgagc tacaactttt gataaacgat       420
     agcaaccctg atgttatttg ccttcaggaa acacatatta ataccaacct aacgaacatt       480
     gcttacccca agcaatttat tggatatttc tataacttta gctctaatac ctatgccaaa       540
     caaggtgtta gcctacttgt acgtaaagac attccccaca agcccatacc aattaacagt       600
     aatacttgct ctttaggtat tgaactccta tcccatccca aaatatgtat ttttaataca       660
     tatatacctc catctcaatt tgtagcagcc aacgaaattc ttaaaatagt agatctttct       720
     agcaagccaa tcctatatgt gggtgatttt aatgcctgga gtccattgtg gggatcatct       780
     ttgcataact ctagagggtt acaaatagaa gaagtcataa acaaatcaac cttaactctc       840
     ctcaatgatg gctccgctac ccatcattcc actcacaact ctttcacggc tattgatcta       900
     acattagctt ccgcatcgtt gttccctttc tgtaagtggt ccgtactaga ctctctttac       960
     ggaagcgatc actatccttt aaaaacaaag attcaatttc gaactaatcc cataaacata      1020
     ccgccatccc ctaaattcaa attagataaa gccaattggg atctgtatcg tgccaaatgc      1080
     agagataact tcaatttccc tacaactcac gacttaaatc tgtttgccgc caaaataata      1140
     aaaggaatca aagcctcagc caatttagca atccctcaaa ccaaaccctc tctacatcag      1200
     agaaatgttc cttggtggag caaagctctg caggatttaa gacaacaaaa gcaatctctt      1260
     tggcacgcat acaaacaaac tcagagcacc gctgctctaa tttcttacag aaaagccaac      1320
     gctcttttca agtacaattc aaaaaaagca aaacgggaat cctatgaaag attcacctct      1380
     aatataacgc ctctatcatc gaccaagaaa acttgggctg acctaaatcg cttgataggt      1440
     aattttccaa gtaacctcag gacaataaaa tacaacaacg agaacctcca ccactccgta      1500
     gacattgccg atgcatttgg gaacttttgg tcggactact ctaaggacgg caatttctcc      1560
     aaccaataca aggcccgtaa agaagtaatt ctttctcagg aatacacacc caccaagttg      1620
     tcgaccgcct ctacagacct tgactcaaat ttttccctta gtgagcttga atatgcactt      1680
     cagcatgcga aagggaaaac acccggtata gaccgaattt catacccaat gctgaaacag      1740
     ttgccctccg aggccaaaca ccgcctatta gagatgtata acgctatgct cgctaggggt      1800
     acctaccctc atgtgtggaa atccgccgta attatcccta tcctaaaacc taacaaacca      1860
     acacatgaaa taacatcatt tagacctatt tctttactcc catgtttaag caagacctta      1920
     gaaaaaatgc tagccaaaag gttaatgtgg ttcgttacga aacataaact tatcagcccc      1980
     caccaaacgg cttttaagca acagcatagc actattgatt ccctcctgca tctccaccat      2040
     tacgcatcgg atgccctttc taccaaaaat cacgttacca tattggcaac tgattttgaa      2100
     agggctttcg atcgcgtagg ggtgcataca gtactggatc aactttcacg gtggggggta      2160
     ggtcaaaaga ccttcaactt agcgaaggcc ttcatgatca accgttctat ccgagtaaga      2220
     gttaacaaca ctctatctaa attctatact ctccacaatg ggatcccaca aggatcgccc      2280
     ctctctgtgg tattgttcat gatcgccttc cagtccttaa acaacataat tttaagacat      2340
     aagcaaatta aactggcaat ttatgcagac gatgccataa tttttagcaa atgtaagaat      2400
     actactgcac taaataataa gtttaaagaa gtccttaatg aaatccaaat ctggggtaac      2460
     acctccggtg cgactcttgc tgtaaataaa tgtaaagttt ttcatatttg taaaaataag      2520
     cgctgtacat acccaccatt atcgcacaat gacatagata tagaacgcgt ttcttttctt      2580
     aaaatacttg gcctgacatt tgataaacga ctcacattta aacaacactg tagcgaactt      2640
     aggaagaaac ttattaagag acttaacatt ataaaattct taacatctaa gcgatctctc      2700
     atccaccgga ccacacttat acaagcgaca agagctctgt tgttgtccat tattgattat      2760
     ggactcccca tctacggctg gtgcgcgcca tcgcacttaa gaaaaatctt acctccttac      2820
     catgcggccg tcaggcgtag cattggcgca tttccaacga ccccaactaa atgcatccta      2880
     gcagaagcag gtttgccgga cattataacc cgagtcacgc aaactacctt taaattaata      2940
     ccaaaactca tgtgctcaac caactctatt ctgctgaagg actataaagt tgcctcaaag      3000
     caccgtagga aattcaaagt ccaatctacg attcgaagat gtataacctt taccaagaga      3060
     cacaacatag gatcgcctta tcgttggaac aaagtcattc catcccctcc gtggaaaata      3120
     cgctccaccg ccattgacac tacacttcat gattttcaaa aatcaaagac ccctatcaca      3180
     acgtttaagc agctattcga agaagttacc cacaaatact ccgataggaa atggctttac      3240
     accgatggtt caaagtccga tgccaccacc acctttgcag tggttgacca acacggatta      3300
     attgtctctt ggggtcgact acctcaccac ttctcagttt tcgctgcgga agcagtagct      3360
     attgttaagg caattaaatt tgctctcgaa cttaaaggaa gttatgtcat ctgcagtgat      3420
     agtctgtcca ccctgcaagg agtacaaaac ttctacaata acaataacct tttatccgaa      3480
     attcgtcacc tctgcataaa aaacattagc aaaattcaac tgttatgggt cccggcccat      3540
     ataggaataa ctgggaacga gatggccgac aatgctgcaa aattagccgg acgggctccg      3600
     tgccttacaa tcatacctgg agtacaacag gacatctgga aaaacatcaa aaacattttg      3660
     cgggacatcg aactggaaga ctggtcgtcg tttaaccact ggtataaaca atctaaccct      3720
     gacaagaaag acatcaagtt ccctacgtcg cttaacggaa gggaatgcgc cattctcaca      3780
     cgattaaaaa ccggacacac aaatctcacg cataagcaca tccttaatgg ggaaactcgg      3840
     ccaaactgcc ctaattgcgg agaagaacta tcagtaaaac atctactgga tacctgtggt      3900
     cactaccaaa acagcagaac acacctattc ggtctcaccc cgccatcaaa tctattatct      3960
     gacctcacag ctgccaactc caaactatta ttatctttcc tacgaaattg taaaattaca      4020
     cacctaattt aaactccccc ttttaattat ctaatatcca tttctttaaa tgttaaatct      4080
     caaatacaaa tgtaaacaaa ctgttatcaa ttgtcgagtc gatggccata gtagctagtt      4140
     actcttccct ctaaattagt tattatattg taaattcgat ttatgtatta wagctaatat      4200
     tgaaataaaa aaaaaa                                                      4216
//
ID   I-1_DEl     repbase;    DNA;    INV; 3983 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3983
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 553-553 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(187..480,435..749,727..921,777..1046,
FT                 1016..1342,1263..1568,1481..2752,2724..3299,
FT                 3244..3765)
FT                 /product="I-1_DEl_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKIIQWNXHGYKNNYPEXQISSKTYXPHIIALXETX
FT                 ITXPSQIPTPVNYTSYHSTNNSNSXGGTSPLIHNSXSQKQLSLSTDFDAVG
FT                 ATITPKQNLTFRRSWSHYHPKTKFNIISAYISXSKPFXXKSLENVLSSXNA
FT                 QTLVLGDFNSWHPYWGSPKAXKRGTTXATYIDKSNYXLLNDKSPTHFSTHQ
FT                 THTHIDLPXQQPTTFLXNSQHSPRLPLXSNGRPPWCXHFPILISTSILPTS
FT                 PTFTAXPTFKLKEADWXLTEIIYXNYIWTTSMVRPFSHINLNLHSSYLPHL
FT                 HRXTYIQTXRSRLGSHRNNIXKLYITESAHLSXPKNTTFPYSAQFLGGTXX
FT                 XKKDKTKKWDKLKKINQKMGQIKKNINTHNKNAKFKRAIREAERTXIYNFT
FT                 SQINHNSDPSKTWANIKRLCGLYPSKTIHSLYNPITHSAITDQTEIANFIG
FT                 QSWSEEAEDYNFSSSFRKASTVRTLSDNLGQKKQKITTFPHLSAKQVQSKH
FT                 KLDYPSKTAIEIEKDITFIEFSSALNSLKGNTPGLDRISYSMIKNLPAPLN
FT                 TELLTTSTTSSSPIFPNLSNSAKPSRTFKHRIINNFNNILKSHIPQSFKLS
FT                 LVLPILKPSETQTDIKSYRPISLNSCLAEVLDKIVAKRLWWFVLNDDLIHS
FT                 NQFGFKRGKPVLDSLLYIDHLASRSISLKKHLSIISLDFTKAFDKIGIHTV
FT                 INQLLEWKLGHHIINYVKNFMTNRKITVKSSNNLSKSFPLNNGIPQGSPIS
FT                 VIIFLIAYNSLTTIISIHKEVKFCAYADDFHFLIEHNKLKNPTTNLESVFK
FT                 EINEWCTLSGSVLSKDKCQTLHICRKXNCKAKLXTGNTPIKTTQTLKILGL
FT                 TINSRYDWXSHIIKLKADLAKPLGIVKHLSSMRYNTNTTTLIQVLKSLIVS
FT                 KVDYCLPIYGYSPKSHLNKLKTPLNAAIRAALGAFRSTPTHNLLIEANVNT
FT                 IEHKRDFLTGNLFKNLLHSKDTPLIKLLKTNKNETQIPKQIKTKHRYPSTI
FT                 DRTIQICKNQNIPXHPIKKNTCKNFDLVAIQKSINTDLTKQNKNSTPPIVF
FT                 QQLFQSLKSTYPNHNFIYTDGSKAGDNIAYSVTDENNVIKTGLLPAYSTVL
FT                 SSEIIAIYKAAQICIKKRGKHAICSDSLSSITSIANPNNNSYYPTTIRNLL
FT                 SKHFPKITINMDTKPCWHQRKRNSGLQLIWIPSHVGIKGNETADSEAKKAI
FT                 RQPLIYTDNHNSRDITQNLKKSLKHRHTELINKTSTWYQYISKLSPPNFPH
FT                 NFPELNRRQQIVITRLRLGHTKMTNAHYXDRSIPNTCPLCNNAPLDVNHIL
FT                 SLCPSLSAQRSSSFPNLNPTQALANPTKVNSLMILTFLEKSNIIYKI"
XX
SQ   Sequence 3983 BP; 1496 A; 1087 C; 439 G; 913 T; 48 other;
     aaacaaaaga caakccaaac ctacttaaca atacacttag agcaaaaaam gaaactgaaa        60
     acctacatca tcaaacaaag caacatawaa aatagctgca aaccaatccg actcagaaga       120
     cgaaatatta taagtttctt gcamagccta acattaattg cacactctta gattttacca       180
     aactaaatgc tcaaaataat tcagtggaat wtccatggtt acaaaaacaa ttacccagaa       240
     mttcaaattt cwagtaaaac ttacaascca cacatcatag cacttcwgga aacccwcatc       300
     acaastccct ctcaaatccc tacsccggtt aattatacct catatcatag taccaacaac       360
     tcaaatagcw ttggaggcac atcgccacta attcataact ctawttccca aaaacaacta       420
     tccctatcca ctgatttcga cgcagttgga gccactatca ccccaaaaca aaatttaaca       480
     taatatccgc ctatatctcc mccagtaagc cctttgamaw caaaagcttg gaaaacgtat       540
     taagttcgsc aaacgcccaa acacttgtgc taggsgactt caacagctgg cacccctatt       600
     ggggctcgcc taaagccaam aaaagaggca caacawtagc kacatacata gacaagtcca       660
     actacwtcct acttaatgac aaatcaccaa cccacttctc gacacaccaa acacacacac       720
     acatagacct tcctttscaa cagccaacat agccccagac ttccactgkg aagtaatgga       780
     cgacctccat ggtgcgwcca ttttcccata ttaatctcaa cctccattct tcctacctcc       840
     cccaccttca ccgctwaacc tacattcaaa ctwaaagaag cagattgggw tctcacagaa       900
     ataatatatw caaactatat ataacagaaa gcgcccacct ctctatsccc aaaaatacca       960
     cattccctta ctccgcwcag ttccttggtg gaacawggaa wkataaaaaa gataaaacca      1020
     aaaaatggga caaattaaaa aaaatataaa cacacacaac aaaaacgcta aatttaaaag      1080
     agcmattaga gaagctgaac gsacctmaat ttataatttc acctcacaaa ttaatcataa      1140
     ctcagaccca tctaaaacat gggcaaatat taaacgcctg tgcggcttat acccctcaaa      1200
     aaccattcac tccttatata acccaataac ccattcagct ataacggacc aaacagaaat      1260
     agcgaacttt atcggacaat cttggtcaga agaagcagaa gattacaact tttcctcatc      1320
     tttccgcaaa gcaagtacag tctaaacaca aactagacta cccctctaaa acagcaatcg      1380
     aaatcgaaaa agacatcaca ttcattgaat tttcatcagc tctcaactcc ctaaaaggca      1440
     acactccagg cctagaccgc atwtcatact ctatgattaa aaaccttccc gcacctttaa      1500
     acacagaatt attaacaact tcaacaacat cctcaagtcc catattcccc aatctttcaa      1560
     actcagctta gtcttaccta tccttaagcc ctcagaaacc caaacagaca taaaatcata      1620
     tagaccgata tccttaaact catgtctagc cgaagtacta gacaaaatag ttgctaaaag      1680
     gctgtggtgg ttcgttttaa acgacgacct cattcacagc aaccaattcg gtttcaaaag      1740
     aggtaaacct gtactagaca gtctactcta catagaccac ttagcttcca gatctatttc      1800
     cctcaaaaag cacctctcaa taatatcttt agactttacc aaggccttcg acaaaattgg      1860
     catacacact gttattaacc aactcctcga atggaaactg ggtcatcata tcattaacta      1920
     cgtcaaaaac tttatgacaa accgtaaaat aactgtaaag tcatccaaca acctctctaa      1980
     atctttcccc ctcaacaatg gaatcccgca aggatctcca atttctgtca ttatattcct      2040
     tattgcttac aactccctta ctacaataat ttccattcac aaagaagtaa aattctgcgc      2100
     ttacgcagac gatttccact tcctcatcga acataacaaa cttaaaaacc ccacaaccaa      2160
     tctcgaatca gtctttaaag aaataaatga atggtgcacg ctctcgggct cagtcctgtc      2220
     aaaggacaag tgccagacac tccacatctg ccgaaaacam aactgcaaag caaaactgcw      2280
     cacaggaaac acacccatta aaaccactca aactcttaaa atcttaggcc ttaccataaa      2340
     cagcagatac gattggwcat cccacataat caaacttaaa gccgaccttg ctaaacctct      2400
     cggaatagtc aaacacctct cctcaatgag atacaacacc aacaccacaa cactaattca      2460
     agttctaaaa tctttaatag tttcaaaagt tgactactgt ttacccattt atgggtactc      2520
     acctaagtcc cacctaaata aactaaaaac tccattaaac gctgcaataa gagcagcact      2580
     tggagcattc cgatccacac ccacacataa cttactaata gaagccaacg ttaatactat      2640
     mgagcacaaa cgggacttcc ttaccggcaa cctctttaaa aatctattac actccaaaga      2700
     taccccactt atcaaacttt taaaaacaaa taaaaacgaa acacagatac cctagcacaa      2760
     tagatagaac aatccaaatc tgcaaaaacc aaaacatccc atwccaccca ataaaaaaga      2820
     acacctgcaa aaattttgac ctagttgcma tacaaaagtc gatcaacacc gatctaacca      2880
     aacaaaacaa aaactccacc cccccaatag tctttcaaca actcttccag tccctaaaat      2940
     ccacataccc gaaccacaac tttatttaca ccgatggatc gaaggcagga gacaacatcg      3000
     cgtacagtgt taccgatgaa aataatgtaa tcaaaacagg cctactacct gcctattcta      3060
     cagtcctttc cagcgaaata atagccatct acaaagctgc acaaatctgt ataaagaaaa      3120
     gaggcaagca cgccatatgt tcagactcmc tttcctccat cacctccatc gcaaacccta      3180
     acaacaattc ctactacccc accactatcc gtaacctact ttccaaacac tttcccaaaa      3240
     taacaattaa tatggatacc aagccatgtt ggcatcaaag gaaacgaaac agcggactct      3300
     gaagcaaaaa aagcaatcag acaacccctc atatacacag acaatcacaa ctccagagat      3360
     atcacgcaga acctcaaaaa atcattaaaa cacagacaca cagaattaat aaacaaaacc      3420
     tcgacatggt accaatacat atctaaatta tcaccaccta acttccccca taacttcccc      3480
     gaacttaata ggagacaaca aatcgtaatc acccgcttgc gacttggcca cacaaagatg      3540
     acaaacgcac actatmttga ccgttcaata ccgaacacat gcccactgtg caacaacgct      3600
     cctctagacg ttaaccatat cctttccctt tgcccttctc tctcggcaca acgatcctca      3660
     tcattcccca atctaaaccc cacccaggcc ttagccaatc ccaccaaagt taattcccta      3720
     atgatcctca ctttcctaga aaaatcaaat ataatctaca aaatataaac tattcctaag      3780
     gtatataagt tcaccagaaa atgtatatat atwtataaaa ccataagtag aataataata      3840
     taaaataaat aattaaataa tgctagtata aaatactaaa ccaccctcag agctgaaggc      3900
     ctcttgcagc tatagctcta accacatatt tttgttaact cctagtttta actattagtt      3960
     agcattgtat aaataaataa ata                                              3983
//
ID   I-1_DEu     repbase;    DNA;    INV; 5267 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.06, Created)
DT   19-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila eugracilis genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5267
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(6), 919-919 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           164..1408
FT                 /product="I-1_DEu_1p"
FT                 /translation="SLLWPLGHPILGITALPALVLAPKQKKRPYQRIDFPE
FT                 LPLTPQKNPRFIVVASKSTKPLSEYSCFAVHRAIKHISKEISTISTLRDGN
FT                 LLLLVNSREVADKFTKIQSLPGIAEVEIKLHQSLNFVKGTIYAPCLINVPE
FT                 SEIVEELKSQNVHSVYKFTKIVDGKPKPSGKILVTFDSYKIPSKLDVSWHT
FT                 VKVREYFPNPMRCKSCQLLGHTMKHCKNTATCVSCNLSPHLPVPCTRIFCA
FT                 NCSGDHPASSPTCPKYQFQRELLCIKTSKKCSFREARNILQQKNNNNASTT
FT                 FASVASAASPPSTTDRTQNTIPTKTTKTTTNTLTPKPDSVTNTTSPTNMPI
FT                 SSLSNSYKSSLSAAPDTQDPSSLISPIDRSRSNIIKALIEEANKIKVPESP
FT                 TNSNALNISSDSDSSMETLDS"
FT   CDS           1473..5144
FT                 /product="I-1_DEu_2p"
FT                 /translation="MPIKILQWNINGIFNNYHELSILINEQSPDILCLQET
FT                 NLPCNFINFVCPKGYIGYFHNLPQNISAKQGVGILIKQNLPHSHQNIDSNI
FT                 LCSVLELNVSIGIQIVNVYIPPNQSFTTSDLSAILDRVRHPYIVLGDFNSW
FT                 SPLWGSSQSNTRGKKIEKLISEQDLIVLNNGSPTHLSTHNSLTHVDLSLIT
FT                 PQIAHRCSWSILSNLHGSDHFPISIDFSIHFSTSPTPPLPKFKIDLANWDA
FT                 YRSMCERRALDWKSGCLNHQVAQITKAIRSAANCSIPQTKRVVRKAAVPWW
FT                 DYNLQRLRNEKQQLFAVYKARMSDTNLINYKRANAVFKKSVLVAKRTCLEN
FT                 FTSRISPLSSSKKVWSDVKRLAGVPPQPFRFLKCDSGVVTGSEDIAEEFGH
FT                 LWSNYSADSNFSAEYVHQKDAYLSQSYLLTALSSPAKCLEKNFTLAEIEYA
FT                 LAGSKGKTPGADRISYPMLKEMPLSLKTRLLGVYNQIFNSGKYPHSWRSAT
FT                 VIPIPKPNKPPAEINSYRPISLLSCLGKTIEKMIARRLMWFITRNNLISQN
FT                 QVAFKQKHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVL
FT                 SQLERWGVGPRLYNLIKAFMTNRSFRVRVNNNTSNTHSLYNGIPQGSPLSV
FT                 VLFIIAFDKLNCILSRHKDIQLSIYADDAIIFSKLKNVNIVKDKFVDVLSE
FT                 IDSWGAISGASLAIEKCKLLHICRKHRCTLSHINFKNKRIENVKSLTILGL
FT                 TFDTKLLFDQHCIKLRKQLESRFNIIKFLSSKYTNIHINTLIGITRALMLS
FT                 KIDYGLPVYGWCAKSHLNKLQAPYHGAIRRAINAFPTSPTACILAESGLPS
FT                 IQARREEMTMQLICKMHLTKNALLRKDFSAMFKQKRNYKVISTLRRCASFT
FT                 TQLGLPPPNHRNTAKLPAYWNSTKANVILDMYNGSKNNTTRAEFQTRFRCL
FT                 QEKLGTKSWLYTDGSKTDDDTTFAVVDSNGKIISGGMLPPYNSIFTAEAFA
FT                 ILQACLFATKHSGHFVICTDSLSTLSSLRNWGQTDPTIVEIRRLSSFNNIT
FT                 LVWTPSHQGIHGNELADQAAKDMRLKPSFLFTPFNNKDLRNRIRLHLKDKQ
FT                 FREWDLYDHRYFSINNTFTKISLPGHLGKRACSTFIRLRIGHTRATHEHIL
FT                 TGTPRPVCRCGEHLEIDHLLNSCRLLESVRALIFGQKKPSDSLNIISQETI
FT                 MNFYHFVIRTNLNI"
XX
SQ   Sequence 5267 BP; 1619 A; 1346 C; 866 G; 1436 T; 0 other;
     cagtcatcga ctatctctct tcgagtgcgg acgtcgttgt cttcctaatt gtcagtggtt        60
     tttgcaattt cgcttcttcc cctttcgctt attttttcgc ttcccctctt tccatcgcgc       120
     acgtgtgttt ttgcatattt ttttctcaag tgcacagcaa taatctttat tatggcccct       180
     gggccaccca atcttgggga taaccgcttt gccagcctta gtgttagccc caaagcaaaa       240
     aaaaagaccc tatcaaagga tcgatttccc tgaacttccc ctcacccctc aaaagaaccc       300
     tcgatttatc gtcgttgctt ccaaatccac caaaccgcta tcagaatact cttgcttcgc       360
     agtccaccgg gctattaagc atatcagcaa agaaatctct acgatctcta ctctacgtga       420
     tggcaatctg cttcttctgg ttaactcccg tgaagtcgcc gataagttca ctaagattca       480
     atctttgcct ggcatagctg aggttgagat caagctccac caatccctca attttgtcaa       540
     gggcaccatt tatgcccctt gcttaataaa tgttcccgaa tcagaaattg tagaagagct       600
     taagtcacaa aatgtgcaca gcgtctacaa attcacgaaa attgttgacg gcaaacccaa       660
     accttctgga aaaatattag ttacttttga ctcctacaaa ataccaagca agcttgacgt       720
     ctcttggcac accgtaaagg ttcgggaata ttttcctaat cctatgaggt gcaagtcttg       780
     tcaactattg ggacacacaa tgaaacactg caagaacact gcaacttgcg tttcttgtaa       840
     cctctcccct catcttccag tgccctgcac tcgcattttt tgtgcaaact gtagcggcga       900
     tcatccagcc tcctctccaa catgcccaaa atatcaattc cagagagaac ttctctgcat       960
     aaaaacaagc aagaaatgca gcttccgtga agcccgcaat attttacaac aaaaaaacaa      1020
     taacaacgca tcgactacct tcgcttctgt cgccagcgca gcaagccctc cgtccacaac      1080
     cgaccgaacc caaaatacga tacctacgaa aacaacgaaa acaacaacaa acacattaac      1140
     tccgaagccc gatagtgtaa ccaacacgac ctctcccacg aacatgccaa tctcatctct      1200
     ttcaaattca tacaaatctt ctctctccgc tgcacccgac acacaagacc cgagctcttt      1260
     aatcagccca atcgatcgct cgcggtcgaa tattattaaa gctcttattg aagaagcaaa      1320
     caaaatcaaa gtaccagaat ccccaactaa ctctaacgcc ttaaatatat catccgactc      1380
     cgattcatca atggaaacat tggattcata gtccagtctt tcccatagca tttcctatat      1440
     ccaacagaaa tcttattgat ttattttaat atatgccaat taaaatatta caatggaata      1500
     taaacggaat ttttaacaat tatcatgaac tttctatatt aataaatgaa caatcccctg      1560
     acattttatg tttacaagaa acaaacctgc cctgtaactt tataaacttt gtctgcccca      1620
     agggctacat tggttatttc cacaatttac cgcagaacat cagtgctaag caaggcgttg      1680
     gtattcttat caaacaaaac ctcccccact cacaccaaaa tatcgactct aatattctct      1740
     gctctgtttt ggagcttaat gtaagcattg gcatacagat tgtcaatgtt tacattcctc      1800
     caaatcaaag ttttacaaca tctgacttat ccgccattct cgatagagtt agacacccct      1860
     acatagttct aggggacttc aactcgtgga gccctctatg gggctctagt cagtcaaaca      1920
     ccagaggtaa aaaaatcgag aaattaatat cggaacaaga tctgattgtc ctcaacaatg      1980
     gatctcccac acatctatcc acccacaatt cccttaccca cgttgacctt tccttgatta      2040
     ccccgcagat agcacacagg tgcagttggt caatcttatc caaccttcac ggtagtgatc      2100
     acttccccat atctattgat ttttccatac attttagtac ctcccctacc cctcccctac      2160
     ctaaatttaa aatagatcta gccaattggg atgcatatag atctatgtgc gaaagaagag      2220
     cgttggattg gaagtcaggt tgtttaaacc accaagttgc acaaataaca aaagcgatta      2280
     ggtccgcagc caactgcagt attccacaaa ccaaacgggt tgtgcgcaag gctgcagttc      2340
     cgtggtggga ttacaacctt cagaggcttc gaaatgaaaa gcaacagctg ttcgcagttt      2400
     ataaagccag aatgtccgac accaacttga taaattataa aagagccaat gcagttttta      2460
     aaaaatctgt acttgtggcc aaaaggactt gtcttgaaaa tttcacctcc aggatatccc      2520
     ctttatcgtc ttccaaaaaa gtttggtccg acgtaaagag gctggccggc gtaccaccac      2580
     agccgtttcg atttttgaag tgcgattcag gtgtcgtaac aggttctgag gatatcgcag      2640
     aagagttcgg gcatctttgg tcaaactatt cggctgacag taacttttca gccgaatacg      2700
     tacaccaaaa agacgcctat ttatcgcagt cctatcttct gacagctctg tcatcacctg      2760
     ccaaatgctt agaaaaaaac ttcacattag ccgaaatcga atatgcatta gccgggtcaa      2820
     agggtaaaac ccctggggct gaccggatat cctacccaat gcttaaggaa atgccactct      2880
     cccttaaaac caggctttta ggagtataca atcaaatttt taactccgga aaatacccac      2940
     acagttggag atcagccact gtcatcccaa ttcccaaacc aaataaacct ccggcagaaa      3000
     tcaacagcta ccgccccatt tccctcctat cctgtttagg aaaaactata gaaaaaatga      3060
     ttgcccgccg acttatgtgg ttcatcaccc gaaataacct gatctcgcag aaccaagttg      3120
     catttaaaca aaagcatagc actatggacg ccttgttgcg tattcaacac ttcgcgtcaa      3180
     acgctctttc cacgaaaaat cacgtctcta tattagcgac tgattttgaa agagccttcg      3240
     atcgcgtggg gattcatgcc gtacttagtc agcttgagcg ctggggtgtt ggtccaagac      3300
     tttataacct tataaaggcc ttcatgacca atcgttcctt cagagttcgc gtaaacaaca      3360
     acacctccaa cacccacagt ctctataacg gcataccgca aggctccccc ctttcagtag      3420
     ttctttttat tatcgctttt gataaactta attgtatttt aagtagacat aaggacattc      3480
     aactctcaat atacgcagat gacgctatta ttttttccaa attaaaaaat gtaaatattg      3540
     ttaaagataa atttgtagat gtattaagtg aaatagattc ctggggagcc atttcgggtg      3600
     cgtccctagc cattgaaaaa tgtaaattac tccatatttg ccgcaaacac agatgcactc      3660
     tctcccatat taactttaaa aataaaagaa tagaaaatgt taaaagttta acaattttgg      3720
     gcttaacctt cgataccaaa ctcctatttg atcagcattg tattaaacta agaaaacaac      3780
     tcgagtccag atttaacatt ataaaatttt tgtcatccaa atacactaac atccatatta      3840
     atacactaat aggaattact cgtgccctga tgctctccaa aatagattac ggtctaccag      3900
     tttacggatg gtgtgcaaaa tcacacttaa acaagttgca ggctccatac catggtgcaa      3960
     tccgacgtgc tataaacgct tttcctacct cacctaccgc atgcattttg gctgagtcgg      4020
     gcctaccgag cattcaggct cgcagagaag aaatgaccat gcagctcatt tgcaaaatgc      4080
     atttaacaaa aaatgctcta ctaaggaagg atttctcagc catgttcaag caaaaacgga      4140
     attacaaagt catatcaacg cttaggcggt gtgccagctt cacaacgcag cttggccttc      4200
     ccccgcccaa tcataggaat actgctaagc taccagccta ttggaacagc acaaaagcta      4260
     atgtgatcct tgatatgtac aacggctcaa aaaataatac caccagagct gaattccaga      4320
     cccgctttcg atgcctacaa gaaaaactcg gcacaaaatc ttggctctac accgatggat      4380
     caaaaacaga cgacgacact acctttgctg ttgttgacag caatggcaaa ataatctcgg      4440
     gtggaatgct acccccttac aactccatct ttactgcgga agccttcgcc atattacaag      4500
     cctgtctctt tgccaccaaa cactcgggac actttgtaat ctgtaccgat agcctttcca      4560
     ccttatcttc tttacggaat tggggtcaaa ccgatcccac aatcgtggag ataagacggc      4620
     tttcttcttt taataatata acccttgtat ggacgcccag ccaccaaggt atccatggta      4680
     acgaactagc agaccaggcc gcaaaggaca tgcggctaaa accatccttt ctttttactc      4740
     ctttcaacaa caaggactta agaaatcgta tccgtctcca ccttaaggac aaacaattca      4800
     gagaatggga cctatatgac caccgatatt tttccatcaa caataccttc acaaaaattt      4860
     ctctgcctgg gcaccttgga aagcgggcat gttcaacatt catccgcctt cgtatcgggc      4920
     acacccgtgc aacacacgaa catatcctta ctggaacacc acgtcccgtc tgccgttgcg      4980
     gcgaacacct cgaaattgac catctactca actcatgccg tcttctggag agcgtcaggg      5040
     ccctgatttt cggccagaaa aaaccctccg atagtttaaa tataatttca caagaaacca      5100
     ttatgaactt ttaccatttt gtcattagaa ccaacctaaa tatttaagta tctttaattt      5160
     aataatttta atctcgagtc gtaggcccta gcagctagta ctctttaaga aatgtattag      5220
     atttagtatt gtatactaga tttaattttg ttaaataaat aaataaa                    5267
//
ID   I-1_DF      repbase;    DNA;    INV; 5287 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.06, Created)
DT   05-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5287
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 963-963 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..1334
FT                 /product="I-1_DF_1p"
FT                 /translation="MDITAVEHKTLNFSKGIIYCNELRYVDEETILQELKS
FT                 QKVTEVRKLMKKNYNNTNLADNTLIETGLVVITFATTKLPETIRVAYESVR
FT                 VKDYIPLPLRCKKCLRLGHPTIVCKSVETCSNCSETKHTDIGDKCSNEKNC
FT                 INCKNNPEIDSRHSPLDRKCPSFLKQQELTAIKIKEKVDHKTAQRIYFERH
FT                 GYQIRGTYARILTNATTLNTTNATTPITTNSQSSSTTNSHSANTNSTKNLL
FT                 QHQNTYIAPAPRASNLSNSIASGSSKPNTSSNQHIQHHNNRDILEEMDTDH
FT                 INPPTPKTTARSTELTGDLKLRIFHKDKSNTLSSSLKPSKQKSKTTNKNKL
FT                 TNQSDSESV"
FT   CDS           1430..5083
FT                 /product="I-1_DF_2p"
FT                 /translation="MTLIIIQWNIKGYMNNYNNLLILIKKYSPHIISLQET
FT                 HIQYTNNIPIPINYSLLTNHATNRFGGVALLIHKSVQHTTLSIPDDHEALA
FT                 THIQSKLNFNVFSTYISPNTSVTSQSLENTLSSQQTPSLLTGDFNGWHPSW
FT                 GSPTSNSRGKIVQRFIDNSQLIILNDKSPTHFSTHNTFTHIDLTLCTPSLA
FT                 PHAKWEILNDLHGSDHFPILIHLFPTTDTPKFNRPFFKLKEANWVQYNKLT
FT                 QDINDKFPPSQLVNKEAAQVNKIILYSANLAIPQTSPNIKPYRVPWWNKKL
FT                 DQLRKEKQSAWKTLNRNVTLENIIDYRRKNAKFRYELKNSKKEATKSFTST
FT                 IQPSTPSSKIWANIRRFCGLNPVKGIHAITNPDNNEITTSNAEISNIFAKY
FT                 FSNLSDDQNFTEEFLNNKYRNNSVDYSPSPTAQTIEKKIANLELASALQTL
FT                 KGTAPGLNRISYQMIKNSSPTTKTRITDLFNKIFDTHIPQAYKTSLVTPIL
FT                 KPNSDKTQPTSYRPISLNCCLAKTLDKIIAKRLWWFVTHNNLLNKNQFGFK
FT                 KGKSTSDSLLYVDYLISKSNTHTSLVTLDFSRAFDRVGVHSIINQLQEWKT
FT                 GPKIINYIRNFMRNRKIIVRIGPHTSNSLPLSNGIPQGSPISVILFLIAFN
FT                 KLSDIISLHKEIKFNAYADDYFLIINFNKNKNICFNLDNLLNDIENWGSYS
FT                 GASLSLSKCQHLHICKKHYCTCTISCNNMLIPTVDSLKILGIHLDNKYKWN
FT                 THINKLIPALHKKLNIIKCLSSLKFNCNTHTLINVVKATVIAKIEYGLFLY
FT                 GHAPKSILNKIKSPFNSAIRLALGAFRSTPTNNLLQEANIPPVEIKRDFQT
FT                 AKLSKNLIYSKDTPIHKFVKQRKRRKKRPPIIDHIINFCQELNLPYEPQKL
FT                 WKHKPPWDLPNLIDTSIRLHKKSNTSREIYQKLYEDSKANLNSYKHIFTDG
FT                 SKITDTITYAITTETSILKCGILPPYSSVLTAEIIAILEAIEFIKNKKGKY
FT                 VIFSDSLAAIDSIKNTNNNNIYPNKIRSILTQLAPKIKLMWIPGHAGIAGN
FT                 ELADQAAKSTNKFPLIFTPNINPTDIKRHIKAEFTTRQKQNIIHCNQWYQS
FT                 TNMRNHISDFFRNTHQKWTRLDQTKITRLRLGHTNLTHQHYLNQNPKPPCP
FT                 NCQADLSLPHILNSCPPLLQVKQAIFKNSNPLDLLRDPNPDNIEKILQFLK
FT                 TTQLYHKI"
XX
SQ   Sequence 5287 BP; 2111 A; 1369 C; 627 G; 1179 T; 1 other;
     gcaataccca agctcggctt ggcaaaccat ggaagaacca ccagacaaat tctccaaatc        60
     ttacaactcc agactcggtg aaccgaagtt tgttgttgtc aaacgaaatg acaaccaatc       120
     acttgaaaaa atttccatat tcatcataaa aaatnctgtt gactacgcat gcggagggga       180
     agtcgaatct ttaaaaaact aaaagatggg tcaatattga ttaaaactaa aaacgattta       240
     cagcaaaaaa actccttaga ctgacaaaaa ttgcagatat ggacatcaca gcagtcgaac       300
     acaagactct aaacttttca aagggaataa tatattgcaa tgaattgcga tatgtcgacg       360
     aagaaacaat acttcaagag cttaaatctc agaaggttac cgaagtaaga aaactaatga       420
     aaaaaaatta caacaacacc aatcttgctg acaacacact gatagaaacc ggcctagtcg       480
     taataacttt tgcaaccacc aaactgccag aaactataag agtagcctac gaatctgttc       540
     gcgttaaaga ttacatacct cttccacttc gttgcaaaaa atgtctccga ctcggtcacc       600
     caacaatcgt atgcaaaagt gtagagacat gctcaaattg ctcagaaaca aagcacacag       660
     atataggaga taaatgctct aacgaaaaga attgtatcaa ctgcaaaaat aacccagaaa       720
     tcgattcccg acacagcccc ctcgaccgca aatgcccaag ttttcttaaa caacaggaac       780
     ttacagctat taaaattaaa gaaaaagttg accataaaac tgcacaacgt atatattttg       840
     aacgacacgg ctaccaaata agaggaacct acgccagaat actaacaaac gccactactc       900
     tgaacacaac aaacgccaca actccaatca caacaaactc acaatcatca agcacaacaa       960
     actcacactc agcaaacaca aactcaacca aaaacttact gcaacatcaa aacacttaca      1020
     tcgcacctgc accccgagcc agcaacttat ctaactcaat cgcatccgga tcaagcaaac      1080
     caaacacatc atcaaaccaa cacatccaac accataacaa ccgggacata ttagaagaaa      1140
     tggacaccga ccacattaac cctcccacac caaagaccac ggcccgctct acagaactca      1200
     ccggagacct taaattaaga attttccaca aagataagtc taatacccta agtagcagtt      1260
     taaaaccctc taaacagaaa tctaaaacta ctaacaaaaa caaacttact aaccagagcg      1320
     acagcgaatc tgtttaaacc ccctaaaact aacgtaagac ctaaaaactt aactactcgc      1380
     taccctacct aaagctaaac ccactacaag atacttatat atctttagaa tgacccttat      1440
     tataatccaa tggaatataa aaggctatat gaacaactac aacaacctac ttatcttaat      1500
     caaaaaatac tcacctcaca taatatcact acaagaaaca cacatacaat acactaataa      1560
     cataccaatc ccaatcaact attcattact aacgaatcac gccacaaaca ggtttggcgg      1620
     cgtggcacta ctaatacaca aatcagttca acatactaca cttagtatcc cagacgatca      1680
     cgaagcacta gcaacacaca ttcaatccaa actaaatttt aacgtatttt caacatacat      1740
     ctctccaaac acatccgtca caagtcagtc actcgaaaac acactatcta gtcaacaaac      1800
     accctcacta ctcacaggag attttaatgg ttggcaccca tcctggggtt cacctacatc      1860
     aaactcacga ggaaaaatag tacaaagatt cattgacaac tcacaactaa ttattcttaa      1920
     cgacaaatcc cccacacact tttcaacaca caatacattc acacatattg acctcactct      1980
     ctgcacgcca tcacttgctc ctcacgctaa gtgggaaata ctcaatgacc ttcatggcag      2040
     tgaccatttt cccatactta ttcatctatt tccaacaaca gacacaccta aattcaatag      2100
     accatttttt aaattaaaag aagcaaattg ggtacaatac aataaactta cccaagacat      2160
     aaatgacaaa ttcccacctt cccaattagt taacaaagaa gccgcccaag tcaataaaat      2220
     tattttgtac agcgcaaatc ttgctatccc acaaacatct ccaaacatta agccatacag      2280
     ggttccatgg tggaacaaaa aacttgacca gctacgaaaa gaaaaacaat cagcttggaa      2340
     aacacttaac cgcaatgtaa ccctagaaaa cataatagac tacagacgca agaatgcaaa      2400
     atttaggtac gaactaaaaa atagtaaaaa agaagccacc aaatccttta cctcaactat      2460
     ccaaccctca actccttcat ccaaaatatg ggccaacata agacgcttct gcggccttaa      2520
     tccagttaaa ggaatccatg ccataacaaa cccagacaat aatgaaataa ccacgtcaaa      2580
     cgctgaaatt tccaatatct ttgcaaaata tttctcaaac ctatctgacg accagaattt      2640
     cacagaggag tttttaaata acaaatatag aaacaactca gtagactact caccatcccc      2700
     aacagcccaa accatagaaa aaaagatcgc aaaccttgaa ttagcatctg cattacaaac      2760
     acttaaagga actgccccag gattaaatag gatatcctat caaatgatca aaaatagctc      2820
     acccacaaca aaaaccagaa ttacagacct attcaacaaa attttcgaca ctcacatacc      2880
     acaagcctat aaaaccagcc tagttactcc aattctcaaa ccgaacagcg acaaaaccca      2940
     acccacttca tatagaccca tatcccttaa ctgttgccta gcaaaaacgc tagacaaaat      3000
     tatagccaaa agactttggt ggtttgtgac ccacaacaat ttattaaaca aaaaccaatt      3060
     tggcttcaaa aaaggcaaat cgacttcaga cagtctactc tacgtagact acctcatatc      3120
     gaagtcaaac acgcacacct cactagtcac tcttgatttc tcaagagcct ttgacagagt      3180
     aggtgtgcac tccataatta accaactcca ggaatggaaa acaggaccga aaataataaa      3240
     ttacattaga aatttcatgc gaaacagaaa aataattgtc cgtattggcc cccacacatc      3300
     aaactcccta ccactatcta acggaattcc acaaggatca ccaatctcag tcatactgtt      3360
     tctcatagca ttcaataaac tatctgacat catatcccta cacaaggaaa ttaaattcaa      3420
     tgcatacgct gacgattatt tcctaataat aaatttcaac aaaaacaaaa atatttgctt      3480
     taacctagac aaccttttaa atgacataga aaactggggc tcatattcag gagcatccct      3540
     atccctatca aaatgccaac atcttcatat ctgcaaaaaa cactactgca cttgcaccat      3600
     aagctgcaac aatatgctaa ttcccacggt agactcccta aaaatcttag gaatacattt      3660
     agacaacaaa tacaaatgga acacacacat aaataaactt atacctgcac tccacaaaaa      3720
     actaaacata ataaaatgcc tatccagcct taagttcaac tgcaacacac acaccttaat      3780
     taacgttgta aaagctacag ttatcgccaa aatagaatat ggtctattcc tatacggaca      3840
     tgcacccaaa agcattttaa acaaaataaa atctccattc aactccgcta tccgcctagc      3900
     tctcggagcc ttccgatcta cgccaacaaa taatctactc caagaagcca acattcctcc      3960
     agtagaaatt aaacgagatt tccaaacggc caaactgtca aaaaatctca tctattccaa      4020
     agacacccca atccataaat ttgttaaaca acgtaaacga agaaagaaaa gaccgccaat      4080
     tattgaccac ataataaact tttgccagga actcaactta ccctacgaac cacaaaaact      4140
     gtggaaacac aagccacctt gggacctccc caacctcata gacacatcga ttcgtttgca      4200
     taagaagagt aacacatcca gagaaattta tcagaaacta tacgaagact caaaagctaa      4260
     tctcaactca tacaaacata tattcactga cggttcaaaa ataacagaca ccataacata      4320
     cgccataact accgaaacaa gcatcctgaa atgcggtatc ctcccaccat attcctctgt      4380
     acttacagct gaaataattg ccatccttga agcaatcgag ttcataaaaa acaaaaaagg      4440
     caaatatgta atcttttccg actctctcgc agcaatagac tcgattaaaa acacaaacaa      4500
     taacaacatc tacccaaaca agattagatc aattttaacc cagttagcgc caaaaattaa      4560
     attaatgtgg attcctggcc atgcgggcat agcggggaac gaactagccg accaagcagc      4620
     aaaatcgacc aacaaatttc cactaatttt taccccaaat ataaacccca cagacattaa      4680
     aaggcacatt aaagcagaat ttacgacaag acaaaaacaa aacattatac actgcaatca      4740
     atggtaccag tccaccaaca tgcgtaacca cattagcgat ttctttagaa atacccacca      4800
     aaagtggacc agactcgacc aaaccaaaat tacccgacta cgtctaggac atacaaacct      4860
     gacccaccaa cactatctga atcaaaatcc aaaaccacct tgccccaatt gccaagctga      4920
     cctctcctta ccccacatac taaactcatg cccccctctt cttcaagtca aacaggccat      4980
     cttcaagaat tccaacccgc tagaccttct cagagacccc aacccagata acattgaaaa      5040
     aatcctacag ttcttaaaaa caacccaatt ataccacaaa atttaaaaaa aaaaactaat      5100
     taattaatta atgtacgaca taagaaataa taataatatg attattaggt taagaaacat      5160
     gtaactacac catccaaatc attaacccac atagcctaag gccccgttgc cagtgctgta      5220
     ccacaagtta gcttagtttt gtaaactttt ctatctttta taataataat aataataata      5280
     ataataa                                                                5287
//
ID   I-1_DK      repbase;    DNA;    INV; 4313 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4313
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1333-1333 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. ~88% identical to I-2_DF and
CC   I-6_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..424
FT                 /product="I-1_DK_1p"
FT                 /translation="VLTNTTTTINTRSPNTQTSTALNAQTTPTSCDHNEPN
FT                 RATTSTAPIKRTLAPKETLLTHNQHDQDDIEAMETDNPNPTRITTQYGSQL
FT                 TQDLKLKIFPKDKSNTLSTNFKPEKKRLNLPTKTNAPIPATANRFKSHRSP
FT                 IL"
FT   CDS           460..4113
FT                 /product="I-1_DK_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLILIQWNIQGYTNNYNNLLILIKKYSPHIIALQET
FT                 HIQYTNNIPTPINYILLTNTATNRFGGVSLLVHKSIQYSIVNIPNDLEALA
FT                 IHIKSMKNMHIKTAYIAPNKTVTNQMLEDILHNNQTPSLVVGDFNGWHPAW
FT                 GSPKTNSRGKTIQKFIDNTQLILLNDKSPTHFSTHNTYTHIDLSLCSATLA
FT                 PHAKWEILDDLHGSDHFPIVVSLFPPNKLNKFSKPFFKLKKANWLQYETLT
FT                 HKNNDTFPTSTNVNKEAAQINKIILHSANISIPQTSANTKPYKVPWWNKEL
FT                 AQLKKEKQLAWKALNRNINFTNVINYRRLNAKYRFEIKRSKSEASSSFTST
FT                 IHPETPSSKIWSNIRRFCGLNPMKQIHAILNPKNNTATTDTLEIANSFSQH
FT                 FSELSNDSTFSDEFRNNKYKITTANYRPTSTAQTIEENITYLELIAALQTL
FT                 KGSTPGLNRISYEMISKSSHTTKNRIKNLFNQIFDSHIPQAYKISLVIPIL
FT                 KPKSDKTNISSYRPISLNSCLAKTLDKIIAKRLWWFVTHNKLLNENQFGFK
FT                 KGKSTSDSLLYVDHLITKSKMHTSLVTLDFSRAFDRVGVHTIIDQLQEWKT
FT                 GPKIINYVKNFMLKRKIIVRVGPHISNSLPLSNGIPQGSPISVILFLIAYN
FT                 KLSNIISIHKEIKFNAYADDFFLIINFNKNKSLNFNMDNVLHNINSWCSYS
FT                 GASLSLAKCKHLHICRKHNCTSTISCSNTQIQQVSALKILGITINTKYKWD
FT                 THIKSLLPSLHQKLNIIKCLSNQKFNCNTQTLLHVAKATIIAKIEYGLFLY
FT                 GHAPKSVLNKIKTPFNTAIRLALGAFRTTPINNLLYEANILPLEQKRDLQT
FT                 AKLTKNLIFSKDTPIHKLVKQRKSKKNPSTIDRTINLCQALNLPYEPVKLH
FT                 KCKPPWDLPNLIDTTFRTHKKQTTPPDTYRKLYQHTKDSHKTHKFIFTDGS
FT                 KINSTISYAVTTDTNIVKYGILPPYSSVLSAEIIAILVAIDQVKSTRGKFM
FT                 ICSDSLSAIDAIKNTNNNNFYSNKIRSLITKLAPKIKILWIPGHVGIAGNE
FT                 LADHTAKSTSNMPLIYTPNINLTDINRHLKLEFLTRNKLSLEHCNQWYKTI
FT                 NKNNSNIDNYYRSFHPKSSRLDQTKIIRLRLGHTKLTHEHYFNQNQPQPCP
FT                 FCQGDNTISHLLNSCPSLLPTKLSIFKNTDPTNLLSELNPDNLEKILIFLR
FT                 SSNLYHKI"
XX
SQ   Sequence 4313 BP; 1750 A; 1154 C; 470 G; 939 T; 0 other;
     tgtactcaca aacaccacaa ccacaataaa cacccgatct ccaaatactc agacatcaac        60
     agctttaaat gcacaaacta cacccacatc ctgcgatcac aacgaaccaa acagagccac       120
     aacatcaacc gcaccaatca aaagaacact ggcaccgaaa gaaaccctgc taacccacaa       180
     ccaacacgac caagacgaca tcgaagccat ggaaacggac aaccccaacc ccaccagaat       240
     aacgacacaa tacggatcac aactcacaca ggaccttaaa ctaaaaattt tccctaaaga       300
     taagtcaaac actctctcca ctaactttaa accagaaaaa aaaaggctaa atcttccaac       360
     aaaaacaaac gcaccaatac cagcgacagc gaatcggttt aaaagccaca gatctcctat       420
     actctaaggt tcaacctcag atctctttcc accccaaaaa tgtcactaat tttaattcaa       480
     tggaacattc aaggatacac aaataattat aataacctcc taatcctgat taaaaaatac       540
     tccccacata tcattgcatt acaagaaaca catatacaat acactaacaa tataccaact       600
     ccaattaact acatactact aacaaacaca gccaccaaca gatttggcgg cgtatcgcta       660
     ttagtacaca agtcaattca atattccata gttaacattc caaacgacct tgaagctcta       720
     gcaatacata taaaatcaat gaaaaacatg cacataaaga cagcatacat tgccccaaac       780
     aaaaccgtca caaaccaaat gcttgaagac attttgcaca acaatcaaac accctcacta       840
     gttgtaggag actttaatgg gtggcacccc gcctggggtt ccccgaaaac aaattctcga       900
     ggaaaaacaa tacaaaaatt cattgacaac acacagctaa tcttactaaa tgacaaatcc       960
     cccacacact tttcaacgca caatacatac acacatatcg acctttcact ttgctcagca      1020
     acactagccc cacacgccaa gtgggaaata cttgatgatc tccacgggag cgaccatttt      1080
     ccaatagtcg tctccctatt ccctccaaac aaattaaaca aattttcaaa accctttttc      1140
     aaattaaaaa aagccaactg gcttcaatat gagactctca cacacaaaaa taacgacaca      1200
     ttccccactt caactaatgt caataaagaa gccgcacaaa ttaacaaaat cattttacat      1260
     agcgccaaca tttcaatccc acaaacctca gcaaatacaa aaccctataa ggtcccctgg      1320
     tggaacaaag aactagccca actaaaaaaa gaaaaacaat tagcttggaa agcacttaac      1380
     cgcaacataa atttcacaaa tgttataaac tacaggcgct taaatgctaa atacagattc      1440
     gaaataaaaa gaagtaaaag cgaagcttcc agctccttta catccaccat acatccagaa      1500
     accccctcat ctaaaatatg gagcaacata agacgcttct gcggtcttaa cccaatgaaa      1560
     caaattcacg ccatactcaa tccaaaaaac aacacagcaa caacagatac cctcgaaata      1620
     gccaattcct tctcccaaca cttctcagaa ctgtcaaacg attcaacctt ctcagacgaa      1680
     ttccgaaata acaaatataa aattacaaca gccaattaca gacccacctc aacagcccaa      1740
     actatcgagg aaaatataac ctaccttgaa ctgattgcag cactacaaac tcttaaagga      1800
     tccaccccag gattaaatag aatctcttac gaaatgatta gtaaaagctc acataccaca      1860
     aaaaacagaa taaaaaacct tttcaaccaa attttcgaca gccacatacc tcaagcctac      1920
     aaaataagtt tagttatacc gatcctcaag ccaaagtccg acaaaacaaa catctcttca      1980
     tacagaccca tttccctcaa cagctgtcta gcaaaaacac tagacaaaat aatagcaaaa      2040
     agactatggt ggttcgtgac ccacaataaa ctacttaatg aaaaccaatt cggctttaaa      2100
     aaaggcaaat cgacttcgga tagtctacta tacgtagacc atcttataac gaagtcaaaa      2160
     atgcacacct ccctcgtcac tcttgacttt tcaagagctt ttgatcgagt aggtgtgcac      2220
     accataatcg atcaactcca ggaatggaaa acaggcccaa aaataataaa ctacgtcaaa      2280
     aacttcatgc tcaaaaggaa aataattgtc agagtaggcc cgcacatctc caattcactt      2340
     ccattatcca atggtatccc acaaggatca cctatatcag ttatcctatt tctcattgca      2400
     tacaacaagc tctcaaacat aatatctata cacaaagaaa ttaaatttaa cgcatacgct      2460
     gatgatttct tcctcatcat aaatttcaac aaaaacaaaa gccttaattt caatatggac      2520
     aacgtattac ataatataaa cagttggtgc tcatactcag gagcatccct atccttagct      2580
     aaatgcaaac acctccatat ttgtcgaaaa cacaattgta ctagcaccat aagctgtagc      2640
     aatacacaaa tacaacaagt atctgcactc aaaatcttag ggataaccat aaacactaaa      2700
     tacaaatggg acacacacat aaaatcacta cttccatctc tacaccaaaa gctaaatata      2760
     attaaatgcc tctccaacca aaaattcaac tgcaatacac aaacactact tcacgttgcg      2820
     aaagcaacaa taatagcaaa aattgagtac ggcttgttcc tatacggaca cgctcccaaa      2880
     agtgtattaa acaaaataaa aacaccgttt aacactgcaa ttcggctagc ccttggcgcc      2940
     ttccgaacca cgcccattaa taacttgcta tacgaagcca acatcctgcc attagagcaa      3000
     aaacgagacc tccaaacagc aaaactcacg aaaaacctaa tattttcaaa agatacccca      3060
     atacacaaac tcgtcaaaca aagaaaatca aaaaaaaacc catcaaccat agaccgcaca      3120
     ataaatcttt gccaagcact taatctaccc tacgaaccag taaaactaca caaatgcaag      3180
     ccaccttggg atctcccaaa tctcatagat acaacattca gaacacacaa gaaacaaact      3240
     acaccaccag atacttacag aaaactatac caacatacca aagacagcca taaaacacac      3300
     aaattcatat ttacagacgg atcaaaaata aactccacta tatcatatgc agtcacaaca      3360
     gataccaata ttgttaaata tggtatccta cccccatact catcagttct ttccgctgaa      3420
     ataatagcca tcctagtagc gatcgaccaa gtcaaaagca caagggggaa gttcatgatc      3480
     tgctctgact ctctctcagc aattgacgcc ataaaaaaca ctaacaacaa caacttttac      3540
     tcaaacaaaa tcagatcact tataacaaaa ctagccccga aaatcaaaat attgtggatc      3600
     cctggtcatg taggcatagc aggcaacgag ctagccgacc acaccgcaaa atcaacaagc      3660
     aacatgcccc ttatttacac cccaaacatt aacttaacag acattaacag acacttaaaa      3720
     ctagaatttc tcacaagaaa taaacttagc ttagagcact gtaatcaatg gtacaaaacc      3780
     ataaacaaaa acaattcaaa catcgacaac tactacagat ccttccatcc caaatcaagc      3840
     agactcgatc aaactaaaat aatacgcctt agactaggcc acacaaaact tacacacgag      3900
     cactacttca accaaaacca acctcaaccc tgcccttttt gccaaggcga caataccata      3960
     tcccaccttt taaactcctg cccatcactc ctccccacca aactatccat tttcaaaaac      4020
     acagacccaa caaatctcct cagcgaactc aacccagata atctagaaaa aatcttaatt      4080
     ttcttaagat cttccaatct ttaccacaaa atataaaaac atacccaaaa tgtatataaa      4140
     taaaaattac caactaagta gccaaactac aatgtcaaat atgtaattaa aacaatatat      4200
     ataatatcat gaatcttaaa agccgaaggc cctgttgcca gcgctttacc aactaagtta      4260
     gtttagtttt gtaaacttct ctatctttaa taataaataa ataaataaat aaa             4313
//
ID   I-1_DPe     repbase;    DNA;    INV; 4166 BP.
XX
AC   .
XX
DT   16-JAN-2012 (Rel. 17.08, Created)
DT   16-JAN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila persimilis: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4166
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1647-1647 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..4002
FT                 /product="I-1_DPe_1p"
FT                 /translation="MTLTIIQWNLRGYINNYNELQIIIKQYQPHIIALQET
FT                 HLFNIHNIPIPINFSLYAKNYSPNFGGAAVLIHNSIESKEIHLQTDFDATA
FT                 IEVESKKKFKIISAYISPSQNFNESNLHNVLSNNSSSLILGDFNSWSKLWG
FT                 SPKNNARGNTVAKFLNNTNFILLNDKSPTHFTTHNTYTHIDLSFCSPDLFQ
FT                 YANWKIIDDLHGSDHFPILITLFNNNKQNKTQNNPIFKINSANWDAFKDKT
FT                 DYFNTKSSPSNNINKESSCLNKILLQSAHLTIPQTSIKNHPRNVPWWNNGL
FT                 QTLNNERKQAWNKLKKHITTTNIIRFRKAAAKFKKEIKSAKNKSLSSFTSE
FT                 IQPQTKTSQTWSNIRRFCGLNNMKNIHTIIHPTTLQPTSDNPSIANSFAEY
FT                 WSDQSKDSNFSSMFTNNKYSISTYQSSPPSQSAQKIESDITSIEFSSALSS
FT                 LKGHTPGIDRISYPMIANTSPAVKDRILKHYNNILNNYIPQAYKIGLVIPI
FT                 AKPGYIKTSITSYRPISLNSCFAKVLDKIIAKRLWWFVTTNKHIHTNQVGF
FT                 KRGKSVTDNLAYLDHLITDALSHKQHLSIVSLDFNKAFDKIGLHAITKQLQ
FT                 EWNIGPKILNYIINFMSKRKIKCRVANNLSSTFPLHNGIPQGSPISVIIFL
FT                 IAYNKLANLITIQRNLTFTAYADDFHIIVKFKKNQTQENLNLDDLFQKIDE
FT                 WCSFSGSSLSFDKCKHLHICRKHNCKCTITTRNLNIPSVDHLKILGLTFDS
FT                 KYRWTRHIEDLASSLSNKINIIKCLSSNKFNCNTHTLISITKAIIVSKIDY
FT                 GLVFYGNSSITWLKKIQTILNCAVRIALGAFRTTPITNLLMEANINTVADR
FT                 RDFLQAKLIKNLYFPNNSPLHKISKSLQSRIHFNNKIPSAITYSLQHCKKQ
FT                 NISLLVKPEIKTKLPFWKFQPNTINTELEKLDKNNTHDSIYQQHFLTIKNQ
FT                 FNDHTFLFTDGSKTISATSFAITTEKNTLKVGLLQNFSSIYSAEIIAIFEA
FT                 IQIVKSMRGKYMICSDSLSSLQAIGNPDNFNYYESKIRSLLMQLHPKIKLL
FT                 WIPGHKNIKGNELADQKAKSASIMPLTYTHNNNISDINKHLKTKMLKDKLI
FT                 KLEQTSNWYQFINPNQITADKFTKRLDQNTTSRIKQTKIIRLRLGHTRITH
FT                 QHYLDPTKINTCTHCLNNVPVTIEHLLKDCPSSQLTDIRFKIFANNNPLTF
FT                 LSNPTKTEIDLIIKYLKETNLYPLI"
XX
SQ   Sequence 4166 BP; 1699 A; 985 C; 467 G; 1014 T; 1 other;
     actctgatat cgactcagaa atagacagta aacaccctat caaattccca taaaaacagc        60
     acaacctcta acantgtaaa aattctacca ctaactacct ctaagcgcag actagcagca       120
     attaaggctg cggacaaatt aaaaagctca agcagcaaaa aaacaagaca gaagaacccc       180
     aatactgacg ccttgagtag caacaactgc tcaatggaaa tagaatccga ctaaaactaa       240
     cagatcaagt aaaaacaacc caaataacca gcactcaaga gataaaaact caaaaaaatg       300
     actctgacaa taatccaatg gaaccttcga ggctacataa acaactataa tgaactacaa       360
     attattatta aacaatacca accgcatata attgcattac aagaaacgca tctatttaat       420
     attcacaata tacccattcc tatcaacttc tcactttacg ctaaaaacta ctcacccaat       480
     tttgggggag cagcagtcct catacacaac tcaatcgaat caaaggaaat acatttacaa       540
     actgacttcg atgcaactgc tattgaagtt gaatcgaaga aaaaatttaa aataatttct       600
     gcatacatat cgccaagcca aaattttaac gaaagtaacc tacacaatgt tctcagcaat       660
     aactcaagct cacttatttt aggtgatttc aacagttgga gcaaactttg gggctcacca       720
     aaaaataacg caagaggcaa tacagtagcc aaattcctaa ataacaccaa ctttatactc       780
     ttaaacgaca aatcccccac acactttacc acacacaata catacacaca tattgaccta       840
     tcattttgct ctccagactt attccaatac gctaactgga aaatcatcga cgaccttcac       900
     ggaagtgacc atttccctat cctcattaca ctctttaaca ataacaaaca gaataaaaca       960
     caaaacaacc caatcttcaa aataaactca gccaactggg atgcatttaa ggacaaaact      1020
     gactacttta atacaaaaag ttcgccctca aacaatatca ataaagaatc atcatgtcta      1080
     aataaaattc tactacaaag cgcccatctt accatcccac aaacatcaat taaaaaccat      1140
     cccagaaacg ttccctggtg gaacaatgga ctgcaaactc tcaacaacga aagaaaacaa      1200
     gcatggaaca aactaaaaaa acacattaca actacaaaca tcattagatt tcgaaaagca      1260
     gcggcaaaat ttaaaaaaga aattaaatct gcaaaaaata agtcactttc ctcttttact      1320
     tcagaaatcc aaccacaaac aaagacaagt caaacctggt caaatataag acgcttttgt      1380
     ggactgaata atatgaaaaa catccataca attatccatc cgaccacttt acagccaact      1440
     tcagataacc cctccattgc caattcattt gccgaatact ggtctgatca gtccaaagat      1500
     tccaacttct catccatgtt cactaacaac aaatattcaa tttcaacata tcaaagctct      1560
     cctccatcgc aatctgcaca gaaaatagaa tcagatatca cttccataga attttcctcc      1620
     gcactctcaa gcttaaaggg ccatacacca ggtattgatc gaatctccta cccaatgatt      1680
     gcaaatacat ccccagcagt taaggatcga attttaaaac actacaataa tatacttaat      1740
     aactatatac cccaagctta caaaataggt cttgttatac caatagctaa acccggctac      1800
     atcaaaacat caataacctc ataccgcccg atttctctaa actcttgctt cgcaaaagtc      1860
     ctagacaaaa tcatagccaa gaggttgtgg tggtttgtta ctacaaacaa acatatacac      1920
     acaaatcaag ttggtttcaa acgtggaaaa tcagttacag acaatctagc gtacttagat      1980
     catctgataa ctgatgcatt atcccacaaa caacatttgt caatagtatc attagatttc      2040
     aataaagcct ttgacaaaat tggactacat gcaataacta agcaactcca agaatggaac      2100
     atcggcccaa aaatacttaa ctatattatt aattttatga gcaagagaaa aatcaaatgt      2160
     cgcgtagcaa acaacctatc gagcactttt cctctgcata acggaatccc ccagggatca      2220
     ccgatatcag ttattatatt cttaatagca tataataaac tagcaaacct cattactatc      2280
     caacgaaatc tcacattcac agcctatgca gacgattttc atattattgt caaatttaaa      2340
     aaaaaccaaa cccaagaaaa tttaaatctc gatgatctat tccaaaaaat cgacgaatgg      2400
     tgttcgtttt caggctcatc cttatcattt gataaatgca agcacttaca tatatgccgt      2460
     aaacataact gtaaatgcac aataacaacg agaaacctaa acattccgag cgtagaccac      2520
     ttaaaaatat taggactcac attcgattca aaatatagat ggactagaca catagaagac      2580
     ttagctagct ctctctcaaa caaaattaat ataataaaat gtctctccag taacaagttc      2640
     aattgcaata cgcatacact aatatcaatc acaaaagcaa taatagtttc taaaattgac      2700
     tacggactag tattttacgg caattcctca ataacttggc ttaaaaaaat tcaaaccatc      2760
     ctaaactgtg cagtaaggat agctttggga gcattcagga caaccccgat tacaaatctt      2820
     ttaatggaag ctaacataaa cacagttgca gatcgacgtg actttctaca agccaaacta      2880
     ataaaaaacc tttattttcc aaacaactca ccgcttcaca aaatctcaaa gtccctccaa      2940
     agcagaatcc acttcaacaa caaaatacct tcagcaataa cttactcact acaacattgc      3000
     aaaaaacaaa acataagcct tctcgtaaaa cccgagataa aaactaagct acctttctgg      3060
     aaattccaac caaataccat aaataccgaa cttgaaaaac tagacaaaaa taatacacac      3120
     gactctatat accaacaaca ctttcttacc atcaaaaacc aatttaatga tcacaccttt      3180
     ctgtttacgg atggatcaaa aaccataagt gccacatcat ttgcaatcac aacggaaaaa      3240
     aacaccttaa aagtgggctt actacaaaat ttttcttcaa tttactctgc cgaaatcata      3300
     gccatattcg aggcaataca aattgttaaa tctatgcgcg ggaaatatat gatatgttca      3360
     gactctctat cctctcttca agccataggc aaccccgata acttcaacta ttatgaatct      3420
     aaaattagat ctcttctaat gcaactacat ccaaaaataa aactactctg gatcccaggt      3480
     cataaaaaca taaaaggaaa tgaactagca gaccaaaaag cgaaatcagc ttcaataatg      3540
     ccccttacat acacacacaa taacaatata tcagacatta ataaacacct caagacaaaa      3600
     atgcttaaag acaaacttat aaaactagaa caaacatcga actggtatca atttatcaat      3660
     cccaaccaaa taacagccga caaattcacc aaaagactag accaaaacac cacatcaagg      3720
     ataaaacaaa caaaaataat tagactaaga ctaggacata caagaataac tcaccaacat      3780
     tacctagacc ctaccaaaat aaatacttgt acgcattgcc tgaacaacgt tccagtaact      3840
     atagaacacc tactcaaaga ctgcccatcc tcacaactca cagacatacg tttcaaaatc      3900
     ttcgctaaca ataatccgct gacattcctc tctaacccaa ctaaaactga aatagaccta      3960
     atcataaaat atctaaaaga aaccaactta tatccattaa tctaactcta atataaaacc      4020
     tatggaatac atctcacata taataaacat aatataataa gcataacgta ataacaacat      4080
     agccgaaggt cgtagtaacc agtgctatcg ttaataagct aggttaatag ctttaactct      4140
     aacctcgctg taaataaata aataaa                                           4166
//
ID   I-1_DSer    repbase;    DNA;    INV; 5239 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5239
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2047-2047 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..1390
FT                 /product="I-1_DSer_1p"
FT                 /translation="MGDPPDPDPANAVSTGQLLKSPGPKYLIVSRSDPGLD
FT                 LNNVNPFLIKKQIDFACGGEIEECKKLRNGSLLIKTKTNVQALKLMQLKTF
FT                 TPTINVTVTLHSSLNCTKGVIYSNDLRGIEENIIIQELAAQQVTDVRKILK
FT                 RDNGSLKETGLIIITFNTHNLPDYIMIGYQRTAVRTYIPLPLRCNNCFKFG
FT                 HLNKFCNNNKICYNCGSLQHLDPSTNEKCSRPQKCINCNEEQQQTSPHNSS
FT                 SRKCPVFLTQQELQAIKTTHKCDNKTAHAILKARTSDNTPHSYSSVIKNQN
FT                 SQQSRNADGPQQLKGPGPNNHEITRSPPISYADIYPSSSNNVTNKITPSTT
FT                 TKSTNKSIKILPLNTPKRLLASMKKDAKKPKPNTKNNSDASSDSGEMDTF"
FT   CDS           1394..5092
FT                 /product="I-1_DSer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="SKTNQTTNQNMLNIIQWNIKGYRNNYPELQILIKHHH
FT                 PQIIALQETHLTNTSSLPIPINFSLYCSDSTNAFGGAALLVHNSISHSNKT
FT                 LSPDFEATCVTINSKRKIDLICTYISPTKQFNIKNLENVLTPTSPSTIVLG
FT                 DFNSWHPYWGSPRSNSRGNTIAKFLDRSDYTLLNDKSPTHYSTHNTFTHID
FT                 LSLATANIAPEIYWKVLNDLHGSDHFPILISMFPTHSSPNLTSKPSFNLKN
FT                 ANWDLFSTHISNQSTHNQPTSNTNKEAATLKKILIQSAHLSIPQNTTYSLP
FT                 HTVPWWNKTLALQKKNRNLKWRTLKNNISTENIIEYKKANAIFRKSIREAK
FT                 KSSILKFTSAIHPNSDPTKMWANIKRLCGIYPSKHIHSIHNPSTQTTSVDP
FT                 TEIGNTLGDLWSKEAKDSNFPTEFRTNKILLTPPCPYPLSPTALEIEKNIT
FT                 LIELNAAINSLKGHTPGLDRISYPMIKNAPISYKLRILHHFNNILDSHIPQ
FT                 SYKISLVLPILKPNKPQTNPNSYRPISLNPCMAKVLDKILAKRLWWFVLTN
FT                 KLIHNNQFGFKRGKSVLDSLLYVDHLATRSLSLKKHLTIISLDFAKAFDKI
FT                 GIHTLIRQLEEWKLGPRIIRYVHNFMSNRKIIIKNGTSLSHSFPLDNGIPQ
FT                 GSPISVILFLIAYNSLTDIISLSKQVKFTAYADDFHLIIQHNRNKNPQINL
FT                 TTLFQHIREWCSSSGSSLSLEKCQVLHICRKRNCTAKIVTGSINIPTTDSI
FT                 KILGLTINNRYNWHSHINNLKTSLSRPLNIIKHLSSKKYNCNTATLIQITN
FT                 SLLISKIDYCLPIYGKAPTSILNRLKSSQNTAIRAALGAFRTTPTNNLLTE
FT                 SKISPILIRQKYHTSKLATKLIHSHDSPIGKFLQTKKKKYRYPSTIDTIID
FT                 SCKSLSLHLSPAKNYPSKKYNPEIIIKATNTSLSHYNKNTTPPITFHQLFH
FT                 SIKNSLPNHQFLYTDGSKTNDIVSFSITNDHNTIKTGLLPYYSSVLTSEAI
FT                 AILEAVQFCKKNSGKFAICSDSLSSLRAITNSNNHSYYPSTIRNIITKLFP
FT                 KIILIWIPSHIGIKGNERADRTAKEAYNYPLILTQNFNSKDITQHLKNYYS
FT                 HIEKDLQNQCNHWYKHIALNTPSNYSLKTTNLSRQQQIIINRLRLGHTQIT
FT                 NAHYINRTIQNTCPLCNNATIDIKHILIDCTTLSQHRTSSFSHENPTQLLA
FT                 NPTTENSMKILSFLHKANLTHKI"
XX
SQ   Sequence 5239 BP; 1936 A; 1588 C; 598 G; 1113 T; 4 other;
     cattggcttt gcctctactg tcaagagcag acgtctactt ctccaaactc taaacagaaa        60
     aaaataaaat aataaataca agtaaaaacc tacaaaaact accaacaacc gcaagtgcaa       120
     gtacaagtgg aagtgcaagt acaagtgcaa gtgcaagtac aagtgcaaga gaactgaaaa       180
     actaccaacg gtacaagtca gagtcgtagg gatgggggac ccccccgacc ccgacccagc       240
     aaatgctgta tcaactggac agctcctaaa atccccagga cctaaatatc taattgtctc       300
     cagatctgac cccggccttg acctcaacaa cgtcaaccct ttcctcatta aaaaacaaat       360
     tgattttgcc tgtggtggag aaattgaaga atgcaagaaa ctccgcaacg gatcactgct       420
     cattaaaaca aaaacaaatg tacaagcgtt gaaactcatg cagctcaaaa ctttcactcc       480
     taccataaac gtcacagtca cactacacag ctctcttaac tgcaccaaag gtgtaatata       540
     ctccaacgac ttaagaggaa ttgaagagaa catcataata caagaactag cggcacaaca       600
     agtaactgac gtacggaaga tattaaaacg agacaacggc tctcttaaag agactggact       660
     cattattatc acctttaaca cacacaacct tcccgactac atcatgattg gctaccagag       720
     aacagcggtc aggacctata tccctttgcc gctaagatgt aacaattgct ttaaattcgg       780
     ccaccttaac aaattctgca ataacaacaa aatttgttac aactgcggat cactgcaaca       840
     cctagaccca tctacaaacg aaaaatgctc aagaccccag aaatgcatca attgtaacga       900
     agagcaacaa caaacaagcc cacacaactc ctctagcaga aaatgcccag tattcctcac       960
     gcaacaagag cttcaagcca taaaaacgac acacaaatgc gacaacaaaa cagcccacgc      1020
     aatcctcaag gcccgcacct cagataacac accgcactcc tactcatctg tcatcaagaa      1080
     ccaaaattcc cagcaaagcc ggaacgcaga tggacctcaa caactcaaag gacccggacc      1140
     caacaaccac gaaataacca gatcaccacc tatatcatac gccgacatct accccagctc      1200
     cagtaacaac gtaaccaata agattacacc ctccacaacc actaaatcca caaacaaatc      1260
     cataaaaatc ctacccctaa acacacctaa aagattactt gcttccatga aaaaagatgc      1320
     taaaaaacct aaaccaaaca ccaaaaataa ctctgacgca tctagcgact caggggaaat      1380
     ggacacattt taatcaaaaa caaatcaaac aactaaccaa aacatgttaa atattataca      1440
     atggaatatc aaaggctaca gaaacaacta cccagaatta caaatcctca ttaagcacca      1500
     ccacccccaa atcatagcac tccaagaaac ccacctcacc aatacatctt ccctaccaat      1560
     ccccataaac ttctccctat actgcagtga cagcaccaat gctttcggag gagcagcact      1620
     attggtgcat aactccatct cacactccaa taaaaccctc agcccagact ttgaagccac      1680
     ttgcgtcaca attaattcaa aaagaaaaat agatctcata tgcacataca tttcccccac      1740
     caaacaattc aacattaaaa acttagaaaa tgttctaacc cctacatccc cctctactat      1800
     cgtactaggg gattttaaca gctggcatcc ttattggggc tcccctagat ccaactccag      1860
     aggcaacaca atagctaaat tccttgacag atccgactac acattactaa atgacaaatc      1920
     tccaacccac tattcgacac acaacacatt tacacacatc gacctttctc tcgccacagc      1980
     caatatcgct ccagagatct attggaaggt cctcaatgat ctacacggta gtgaccactt      2040
     tcctattcta atttcaatgt tccctacaca ttcatccccg aacctcacat ccaaaccctc      2100
     cttcaatctg aaaaatgcca attgggacct ctttagtact catatttcca atcagtccac      2160
     tcataatcaa cccactagta acacaaacaa ggaagcagct actcttaaaa aaatcctaat      2220
     ccaatctgcc cacctatcca taccccagaa caccacctac tccctcccac acactgttcc      2280
     ctggtggaac aaaactctag ctctacagaa aaaaaataga aacctcaaat ggcgaacttt      2340
     aaaaaacaac atcagcactg aaaatataat cgaatacaaa aaagctaacg ccatcttcag      2400
     aaaatccatt agggaagcca aaaaatcctc catcttaaaa ttcacatctg caatccaccc      2460
     aaactccgac ccaacaaaaa tgtgggcgaa cattaaacga ctctgtggaa tatacccttc      2520
     caaacacata catagcattc acaacccctc cactcaaaca acttctgtag atccaaccga      2580
     aataggcaac acactcggag acctatggtc aaaagaggca aaggactcca acttccctac      2640
     cgaattccgc accaacaaaa ttctccttac accaccctgt ccctacccct tatccccaac      2700
     agccctcgaa attgaaaaaa acattacact tattgaactt aacgcagcca taaactctct      2760
     aaaaggacac acacctggcc tagaccgcat ttcttatcct atgattaaaa atgcacccat      2820
     ctcctataag cttcgaatcc tccaccactt caacaacatc ctagactccc acatccccca      2880
     atcctataaa atcagcctcg tactacccat cctcaagccc aataaacccc aaaccaaccc      2940
     caactcctac cgccccatct cactcaaccc ttgcatggcc aaagttctcg acaaaatcct      3000
     agcgaaaagg ttatggtggt ttgttttaac aaacaaactc attcataaca accaattcgg      3060
     cttcaaaaga ggcaaatctg ttctagatag tctactttac gtagatcatc tagcaaccag      3120
     atctttgtct ctwaaaaaac acttaacaat aatatctctt gactttgcta aagcctttga      3180
     taaaattggc atccacaccc tcatccgcca gttggaggaa tggaaactag gcccmcgcat      3240
     tataagatac gtccacaact tcatgtccaa ccggaaaata ataataaaaa acggcacatc      3300
     cctctcccat agcttccccc tcgataatgg tatcccacaa ggttccccta tctcagtcat      3360
     cctcttccta atagcctaca attccctaac cgacattatc tccctttcaa aacaagtcaa      3420
     gttcactgcc tacgccgacg acttccatct tattatmcaa cacaaccgga acaaaaaccc      3480
     ccaaatcaat cttacaaccc tattccaaca tatccgagaa tggtgctcat cctctggatc      3540
     ctccctctct ctagagaaat gtcaagtcct acatatatgc cgaaaaagaa actgcacagc      3600
     aaaaatagtc actggctcaa ttaacatccc taccaccgac tccataaaaa tccttggcct      3660
     gacaatcaac aaccggtaca actggcattc tcacataaac aacctaaaaa catccctctc      3720
     ccgtcccctt aacatcatta aacacctctc ctcaaaaaaa tacaattgca acaccgccac      3780
     cctcatccaa atcacaaact ccctcctcat ctccaaaata gactactgcc tacccatcta      3840
     cgggaaagct ccaacctcca tccttaaccg actcaaatcc tcacaaaaca cagctataag      3900
     agcagcgctt ggtgccttca gaacaacacc aacaaataat ctgctgactg aatcaaaaat      3960
     aagccctatt ctaatcagac aaaaatacca cactagcaaa ctagcaacta aactgatcca      4020
     ctcgcatgac tccccaattg gcaaattcct ccaaacaaaa aaaaaaaaat acagataccc      4080
     cagcacaatt gatacaataa ttgactcctg caaatcccta tccctccatc tctcccctgc      4140
     taaaaactac ccatccaaaa aatacaaccc agaaataatc ataaaagcca caaacacatc      4200
     cctatcccac tacaacaaaa acaccacacc ccctataacc ttccaccaac ttttccattc      4260
     tataaaaaac tccctcccca accatcaatt cctctacacc gacggctcaa agactaacga      4320
     cattgttagc tttagcataa ccaacgacca caacaccatt aaaaccggac tcctacccta      4380
     ttactcttct gtcctcacaa gcgaagctat agccatacta gaagcggtac aattctgcaa      4440
     gaaaaattca gggaagttcg ctatatgctc tgattcccta tcttccttaa gagccataac      4500
     caactccaac aaccactcct actaccccag cacaatcaga aacataataa ccaaactctt      4560
     ccccaaaatt atwcttatct ggatcccaag ccacataggc ataaaaggga atgagagagc      4620
     ggacagaaca gccaaggaag cttacaatta tccactcatt cttacccaaa acttcaactc      4680
     caaagatatc acacaacacc tcaaaaatta ctacagtcac atagaaaaag atctgcaaaa      4740
     ccaatgcaac cattggtaca aacatattgc actcaacacc ccttcaaact actccctcaa      4800
     aaccacaaac cttagcagac aacaacaaat aataatcaat agactacgtc taggccacac      4860
     acaaatcaca aacgcccact atattaatag aacaatacaa aacacttgcc ctttatgcaa      4920
     taatgccaca atagatataa aacacatatt aatcgactgc actacacttt cccaacatag      4980
     aacctcatcc ttctcccacg aaaacccaac ccaactcctc gcaaacccaa caacagaaaa      5040
     ctcaatgaaa atcctctcct ttctccacaa agccaacctc acccacaaaa tctagccttt      5100
     aagtcctttg tataatacta aaatctgtat acatttaatc gagcggtagg ccacagcagc      5160
     caatgctcaa tatcctatgt tagcctttag tttacaacca accgctagct ttatataaat      5220
     aaataaataa ataaataaa                                                   5239
//
ID   I-1_DSuz    repbase;    DNA;    INV; 5397 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5397
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 609-609 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           443..1561
FT                 /product="I-1_DSuz_1p"
FT                 /translation="MLVKTKNVAEKFLKSKNLAGICEIECKLHESLNFVKG
FT                 TIYAPFLVNVPDDEIVKELADQNVHSVFKFSRKVDGKLKPSGVILVTFDLY
FT                 NLPSKLDVSWHTIKVREYIPNPMRCKSCQIIGHTAKFCKNTPTCEICNFPP
FT                 HTPKPCTRTQCANCSSDHASSSPSCPRYQQQKELIKIKTTRKCSIREARLI
FT                 LKQQSTTTTHPSPNYAQAVSNSNSLPNTISNTQKENTINENIDEHSKEPAK
FT                 ADSQPQPLSITPSSSNSITRFEIRSPSQTSSKQKLQTSPTTCTVNTKTIED
FT                 FEHLNHSPNSFSPSSSVHSVRSELSPLSLNYPDFQERLKNSRSLRSEADKL
FT                 LSEMKSNSNSSDSDTAMDVADSASAPLNSL"
FT   CDS           1576..5262
FT                 /product="I-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MVINILQWNIKGIFNNYHELKLLITERSPDILCLQET
FT                 HLPHNFNNFRCPPGYVGYFWNFPHNTSAKQGVAILIKQQIPHSQKSISSHL
FT                 LCTAIKVELTHPIFIINMYIPPCQGFSSTDLSHALNQLPGPILLVGDFNSW
FT                 SPMWGSPYPNSRGKKVERVISSFDLIVLNDGSGTHLSTRNTITHIDVSLIS
FT                 PRIAHRSSWSICDQLHGSDHFPIFVSLEFPFSPDKTLPIPKYKTDLADWNK
FT                 FGQICIELESKWVPGCLNHQVALLTKYIRTSANSSIPQTKRIPHKSKIPWW
FT                 SPQLQQLRETKQELFHTFKSQMSSINLINYKRANAIFKKTVLSEKRKSLEN
FT                 FTSRISPLSTTKKIWSDINRLAGSPKIPIKCIKTANALITDSSSISEQFKE
FT                 IWAKYGADENFSNTYIGLKESYLSSSYNPTTISPTARSLDTPFRLHEIEAA
FT                 LQTAKGKCPGADKISYTILKQIPPCLKQRLLDIYNSMLSTGNYPHTWRSSI
FT                 TIPIPKPKTNSSEINGYRPISLIPCLSKIIEKMIALRLMWFINRHNLINGN
FT                 QVAFKRNHSTMDALLKIQHFVSNAISTRNHVSILATDFEKAFDRVGPHAVL
FT                 SRLQLWGIGPRLYNLVKAFMTNRTFKVRVNDKTSTSANLLNGIPQGSPLSV
FT                 VLFIIAFDHVNLRLARYKKINLSLYADDIIIFTKEKNLRTVKNTFLKILQD
FT                 LESWGISSGASLAIEKCHTLHICRKVHCCFPTLEFRNKTIQTVTNLKILGI
FT                 IFDSRFSFKEHCITLRKQLEVRANIIKFLSSKFSHIHPNILTNITRALILS
FT                 KIEYGLPIYGWCAATHLRKLQSPYNTSVRRSINAFPTSPIRCILAEAGLPT
FT                 IMERLNEVTMNLIPKLFTSPNHSLVKDFKACFRKTRTPRVPSTLHRCAKQA
FT                 AQIGLAAPKRRIIVSSTPPWKVTSHYIKKDLHFFAKSDTPSRVFQAQFGLL
FT                 RSQLGARNWLYTDGSKTDSSSTFAVVNEDNDIIAAGTLPNFNSIFTIEAFA
FT                 VLQACQYANKNKGKFAICTDSLSTISALENPGQSDPTICQIRKIICFKAPK
FT                 ITIIWVPSHQGILGNEQADAAARFMSTAPTLLFTPTSAKDIFRLITSTNKE
FT                 KLKSDWEGIIHRYNTLNPAREKTTFPTDLNKHDRRIYTRLRIGHTQETHEH
FT                 LLQGLAPPPCRFCGGIISSIEHLLDTCQALNHTRFSIFGSVTVPSSLLTSP
FT                 SIPNIKKLKEYITTVHLRI"
XX
SQ   Sequence 5397 BP; 1739 A; 1466 C; 829 G; 1362 T; 1 other;
     cagtcaccga ctaactctct tcgagcgcag acgtcagtgc ctaatctcgt gtcttatctt        60
     tcttcttttc gtggattgat ccacaccgtt cttcgcttat aaacggtcat ttattctttc       120
     acgtgcaagt gccttcgatc acaaatctaa agttaaagtt attgtgtcat ggcctcaggg       180
     cctcccaaat tcggggacaa tcgctttgct atgcttagcg acagccccaa aaaaaaaaaa       240
     gaaaagacct tttgttaaac ttcaagaaga gttccccgaa cttcccgaaa aaacaaaaga       300
     aaaccccaaa ttcatcatta tatcttccaa agatcccaag aagaaaattt cagaatactc       360
     ctgcttcgct gtttaccgcg cgttgaatat tataagcaaa gaaatagtat ccatctccac       420
     cctccgcgat ggcaacctcc taatgctggt gaaaaccaaa aatgtggcag aaaaattctt       480
     aaaatcaaaa aatcttgctg gtatatgcga aattgaatgc aaactccatg agtcccttaa       540
     ctttgtcaag ggtaccatat atgccccctt cctcgtaaat gtccccgatg acgagatcgt       600
     gaaagaactg gccgaccaaa atgtacactc cgtattcaaa ttctctagga aagtagatgg       660
     caaactaaaa ccttcgggtg ttatactcgt aacattcgac ctgtacaact tgcctagcaa       720
     actagacgtc tcctggcaca ctatcaaggt aagggaatac attcccaacc ctatgaggtg       780
     taagtcttgc caaattatag gtcatacagc caaattctgc aaaaacacgc ccacgtgcga       840
     aatatgtaat ttccccccwc acacccccaa accctgcaca cgtacccagt gcgctaattg       900
     ctctagcgat catgcttcct cgtccccctc atgcccaaga taccaacaac aaaaagaact       960
     tataaaaatc aaaactacac gcaagtgcag tataagagaa gctagactga ttctcaaaca      1020
     acaatctaca acaacaacac atccatcacc caactatgca caagctgtgt ccaactcaaa      1080
     ctctttacct aacacaatca gtaatactca aaaagaaaac actataaacg aaaacatcga      1140
     cgaacactcc aaagagcctg ccaaagcaga ctctcaaccc caacctctct caattactcc      1200
     ctcctcaagc aattccatta cacgctttga gattcgctct ccaagtcaaa catcatccaa      1260
     acaaaagctg caaacaagcc ccacgacatg cactgtcaat acgaaaacga tcgaagactt      1320
     cgaacaccta aatcactcac caaactcttt ctctccctcc tcaagtgtac acagtgtacg      1380
     ctcagagctt tcccccctct ctttaaacta tcccgacttc caagagcgct taaaaaacag      1440
     tcgctctctt agatctgaag ctgataaact cttaagcgaa atgaaatcta attctaactc      1500
     atctgattca gatacagcta tggatgtagc tgactctgcg tcagctcccc ttaattccct      1560
     ttaagatact ttagaatggt tatcaacatt ttacagtgga acataaaagg aatctttaat      1620
     aactatcacg aattaaaatt acttataacc gaacgctctc ctgacatttt atgccttcag      1680
     gagacacact tacctcataa ctttaataac tttaggtgcc cgccgggtta tgtggggtat      1740
     ttttggaact ttccccataa tacctctgct aaacagggcg tggccatact tataaaacag      1800
     caaattcctc actcccaaaa gtccataagc tcccacctgc tctgcactgc aattaaagtc      1860
     gagcttactc accccatttt tataataaac atgtacatcc caccatgtca aggcttttca      1920
     agtacggatc tttctcacgc tctaaatcaa cttcctggac ctatattgtt agtcggagac      1980
     tttaattctt ggagccctat gtggggttcg ccttatccca attcccgcgg taaaaaagtt      2040
     gagcgagtca tttcatcgtt tgacttgatt gtcctaaacg acgggtctgg aacccatctc      2100
     tccacccgca acaccataac acacattgat gtttccctaa tttcacccag aatagcccac      2160
     cgtagcagtt ggtctatatg tgatcaattg catggaagcg atcatttccc cattttcgtt      2220
     tccttagaat tcccattctc cccagacaaa accctaccaa ttccaaaata taaaactgat      2280
     ctcgctgact ggaataaatt cggccaaatc tgcatcgaac ttgaatccaa gtgggtaccc      2340
     gggtgcttaa atcatcaggt tgctctactt acaaaataca tcagaacgtc cgctaactcc      2400
     tccatccccc aaacaaaacg aataccacat aaatcaaaaa tcccatggtg gagcccgcaa      2460
     cttcaacagc tcagggaaac aaagcaagaa ctgttccaca catttaaatc tcagatgtca      2520
     tccataaacc ttatcaatta taaaagagcc aatgccattt ttaagaaaac tgtcctttct      2580
     gaaaaacgga aatcccttga aaattttacc tcacgtattt cccccctttc gaccaccaaa      2640
     aagatatggt ccgacattaa tcgtctggca ggctctccga agatcccaat aaaatgcatc      2700
     aaaacagcaa acgcactcat aacagactcc agtagcatat cagaacaatt caaggaaatc      2760
     tgggccaaat acggagctga tgaaaacttc agcaacactt acataggtct taaagaatcc      2820
     tacctatcct catcatacaa tcctaccaca atatccccaa cagctcggag tttggacact      2880
     ccatttagac tgcacgaaat cgaggcagct cttcaaaccg ccaaaggcaa atgccctggc      2940
     gcagataaaa tatcctatac catcctaaaa cagatacctc catgtcttaa gcagagactt      3000
     cttgacattt acaactccat gctatccacc ggcaattacc cccacacctg gcgatcttcc      3060
     attaccattc ccatccctaa acccaaaacc aactcctcag aaattaatgg ctatcgccca      3120
     atatctctaa taccctgtct tagcaaaata attgagaaaa tgattgcact ccgacttatg      3180
     tggttcatca accgccacaa tctgatcaac ggcaaccaag ttgcatttaa aaggaaccac      3240
     agcactatgg acgcacttct gaagatccaa cacttcgtgt cgaatgccat ttcgaccagg      3300
     aatcacgtct ccatcctggc gacggatttc gaaaaggcct tcgatcgcgt ggggccacat      3360
     gcagttctct ctcgactcca gctttggggc attggtccaa ggctttacaa cctggttaaa      3420
     gcttttatga cgaataggac ctttaaagtc agagtcaacg acaagacttc aacttcggcc      3480
     aacttgctta acggaatccc acaaggctcc cctctgtcgg tagtcctgtt catcatagct      3540
     tttgaccacg taaaccttcg tttagctagg tacaagaaaa taaacctttc cttatatgca      3600
     gatgacataa taattttcac aaaagaaaag aacctcagga cggtaaaaaa tacattttta      3660
     aaaattcttc aggacttaga gtcttgggga atatcctcag gcgcttctct tgccatagaa      3720
     aaatgccaca cacttcacat ttgtcgcaaa gtccactgtt gcttcccaac tttggagttt      3780
     agaaataaaa ccatccaaac agttacaaat ttaaaaatac ttggcattat atttgattct      3840
     aggtttagtt ttaaggaaca ctgtattact ttaagaaaac aacttgaagt ccgcgcaaac      3900
     attataaaat tcttaagttc taagttttca cacatccatc ccaacatcct aaccaatata      3960
     acccgtgccc ttatcctatc caaaatcgaa tacggactcc caatctacgg ttggtgtgca      4020
     gcaacccacc taaggaaact gcaatcacct tacaatacct cagttcgcag atcaataaac      4080
     gcattcccaa catcgccaat acgatgcatt ctggccgaag cagggttacc aaccataatg      4140
     gaaagactaa acgaagtcac catgaattta ataccgaagt tattcacaag cccaaatcac      4200
     tcgctggtca aggatttcaa agcctgcttc agaaaaacac gcacgcccag ggttccctca      4260
     acccttcaca gatgcgccaa gcaagctgcc cagataggcc ttgcagctcc taagcggaga      4320
     attatagtta gttccacccc accctggaaa gttacatcgc actatataaa aaaggatctt      4380
     cacttcttcg ccaaaagtga cacacccagc agagttttcc aagcacaatt tggtcttcta      4440
     agaagtcaac taggggcaag gaactggcta tatacggatg gatctaaaac ggattcatcg      4500
     tctacattcg cagtcgtcaa cgaggacaac gacatcatcg cggcaggaac cctcccaaac      4560
     tttaactcca tatttaccat cgaagctttt gcagtcctac aggcctgcca atatgccaac      4620
     aaaaataaag ggaaattcgc aatttgcacc gacagcctat ccaccatctc tgctctggaa      4680
     aaccccggac aatcagatcc cacaatatgc cagataagga aaattatttg ctttaaggca      4740
     ccgaaaataa ccatcatttg ggtccccagc catcagggaa ttcttggaaa cgagcaagct      4800
     gacgcagctg cccgatttat gagcaccgca ccaacccttt tatttacacc taccagtgcc      4860
     aaagacatct tcagacttat tacatccacc aacaaagaaa agctaaaatc tgactgggaa      4920
     ggtatcatcc atagatacaa cacactaaac ccagcccgcg aaaaaacaac ttttcctacc      4980
     gacctcaaca aacatgatcg cagaatttac acccgacttc gcatcggaca cacacaggaa      5040
     acccacgaac atcttcttca aggattggct cccccgcctt gccgcttctg cggaggcatt      5100
     atttcttcga tcgaacatct tctcgatacc tgccaggctt taaatcatac acgattttcc      5160
     atttttggat ccgtcaccgt tccatcctcc cttctcacat ccccctccat accaaacatc      5220
     aaaaaattga aagaatacat tactacagtt catctccgaa tttagatatc gtaatttagc      5280
     ttaaacagcc gggccgaagg actttagctt ccagcgcccc ttctttcttt ttaaatatta      5340
     attttagtat tatatactag ctttaatttg ttaaaataaa ataaataaat aaataaa         5397
//
ID   I-1_DT      repbase;    DNA;    INV; 5328 BP.
XX
AC   .
XX
DT   27-JUL-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5328
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1702-1702 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           427..1374
FT                 /product="I-1_DT_1p"
FT                 /translation="MIPGDIPVTVSEHRSLNTCKGVIYCPDLNGIDTEEIL
FT                 ENLKSQKVVEIKKITKYLQRKTTDTGLIIITFSQQENPEFIYIGYQRVKVR
FT                 IYIPPVMRCFNCLRIGHPSKICKFTELCLSCSQPAHINQELGESCTNSLSC
FT                 INCKERNIPDNNHHARDKVCPVLITYKEIQAIKAIQKVSNREAWSIYKTRH
FT                 QHDGSLYSTVASRNHGKPQQVPKNTTTTFTLPPTTTKPATMDNEKNKTDQP
FT                 SGSNVRPPIQYESEEEMASASDTSQPPTNDKSNSATKIYPTKLSKREKRLL
FT                 KQDYMLTRSKIKAIVNNTNTKTTN"
FT   CDS           1430..5077
FT                 /product="I-1_DT_2p"
FT                 /translation="MTIKILQWNINGYLNNYNQLQLLIKKYTSQIICLQET
FT                 HLIPYRNFPTPINYNIYTHNSAGNASGGVAILVHNSIQHSEIDLPHDFESL
FT                 CLRIHSKYTFNIICSYIPPRLHFTYNNLDNVYCNLSTPTLITGDFNGWHTL
FT                 WGSPSNNSKGITLAQFIHQSPLAILNDGSPTHFSTHNTLTHVDLTLASAAL
FT                 ALESNWSIETNTFGSDHFPIITTLFDTTSTPTIVPKFKLDRANWPKYKEAS
FT                 NYFSLQRPISQNLNKEAANLTKIVHQSANCSIPQTSPNRFSKRTVPWWNPH
FT                 LQTLKKSKNFHFNILRRNISNANIINYRKANALLKREIKIAKRNSLEIFTS
FT                 EINPNSSTSQIWSNLRRFCGLRPRVGIHCIAKPNSPTKITDSLAIANELCS
FT                 FWSTESNDENFSTTFTHHKNNLLPIAHNYQPSTSALKIESEITTFELNIAL
FT                 SKQKGKSPGLDRVSYQMLQNLHPTVKIRLRDHFNNILNNYIPQHYKLSKII
FT                 PINKPNTDKTSLNSYRPISLNSCFAKTLDKIIANRLWWFVSYNNSIDSRQT
FT                 GFRKGKSISDNLLVLDHLISSSLSTKNHLSVISLDFTKAFDKIGIHTIVDE
FT                 LRSWKIGPVIVNYCINFMTNRKIKVYANNHSSFTRPQHNGIPQGSPLSVIL
FT                 FLIAFNKLNSVILNHKQFNFCAYADDYHIFKKINKNSRIDIDPLITDILTW
FT                 CEYSGAVLSLNKCKHLHFCKKHSCQLRITTTLTPIDNTDTLKILGMTFNKK
FT                 YNWKDHIATLVSSLSNRLNIIKCLSSNKYNCNVLTVINTIKTLIMSKIDFG
FT                 LPFYGNSPESIIKPIKTIYHSAIRSALGAFRTTPIHNLLYESNMMPIDIRT
FT                 NYSISKIIKPILLSNNSPLKSIVTSILKSKKRNPKIPSVLNRSLKSAIELG
FT                 LPTKPLIFKKQTNPPWWDISDSIDTTLHNLSKSTTPQLVYQQKFLELKNKY
FT                 PYSTFIYTDGSKTHDATSFSVVTNNTSQQHLLPYYSSIFSAEIIAIYNAIL
FT                 IVKHSPNPSVICSDSLSALNAIANPSNNSFYPTTIRQILLKTNKITIAWIP
FT                 GHCGIQGNEVADKAAKTAFSLPHQFYNNNNISDIQQHIKKHFKTQLTELFN
FT                 KTNNYYKTNNFNKNNIYDYGRLQTEIPIPRYTFTKIIRLRLGHTNLTHSYI
FT                 FTRPPTIPSCPLCSSQITSPLHILIECSFLYTLRSSLFSSSNPIQTIFDLK
FT                 ATNIKK"
XX
SQ   Sequence 5328 BP; 1959 A; 1413 C; 643 G; 1313 T; 0 other;
     cagttcaatt tcggcagtcg atacgaacgg ttgtgcaatt cttgtgttct ctcaagtaat        60
     aaaccttcaa tcttccgaag cgaataaccc cccaacccct cgcctacata ttgacttctt       120
     atcagcaatt gaaatcacca gcaattgtct gcaccgacaa aaaaccgtcg cgtagccaac       180
     tgaagacaac ataatgcttg accccccctg gcaccgaccc ccgcacccga cgggaagttt       240
     ctcgttatct ctcgagctga caacaacaac gatggttcct tagcaaaggt atcgccgttt       300
     acattgaaaa aaattattga tgtaactgtt ggaggagtag tagaagaatg caaaaaactt       360
     caagacggaa atattcttgt taaaaccaaa aataagtctc aaactgaaaa acttttgaac       420
     ttaaaaatga ttcccggaga catccccgtt acagtctctg aacaccgatc actaaacacc       480
     tgcaaaggag tcatctattg tccagactta aacggaatcg acactgagga aatcctagaa       540
     aacttaaaat cccaaaaagt tgttgaaatt aagaaaatca caaagtactt acaacgtaaa       600
     acaactgata ctggtctaat aattattaca ttttcacaac aagaaaaccc agaattcatt       660
     tacatcggtt accaacgagt taaggtacgc atttacattc caccggtaat gcgctgcttt       720
     aactgcctaa gaattggtca tccatcgaaa atctgcaaat tcaccgaact ttgcctgtca       780
     tgcagccaac cagcccacat taatcaagaa ctgggagaat catgcaccaa cagtctaagc       840
     tgcatcaact gcaaggaaag aaacatcccc gacaacaacc accacgccag ggacaaagtc       900
     tgccccgttc tcatcaccta taaagaaatc caagcaatca aagctatcca aaaagtaagc       960
     aaccgcgaag cttggtctat ttataagacc agacaccaac acgacggatc cctctactct      1020
     acagtggcca gtcgtaacca tggcaaaccg caacaagtcc caaaaaacac aacaacaacc      1080
     ttcacgctac caccgacaac aaccaaacca gctacaatgg acaatgaaaa aaacaaaaca      1140
     gaccaaccct ctggaagtaa cgttcgacca ccaattcaat acgaaagcga ggaagagatg      1200
     gcttcagctt cggacacctc gcaaccacct actaacgata agtctaactc cgctactaaa      1260
     atctatccta ccaaattatc aaaaagagaa aaaagattat tgaaacaaga ttatatgcta      1320
     actaggtcca aaatcaaagc catagtaaac aatacaaata caaaaacaac aaactaaata      1380
     attctaagat atattctaaa ccatattaca tttttaagaa gaaaatatta tgactattaa      1440
     aatactgcaa tggaatataa acggctactt aaataattat aaccaactcc aactcttgat      1500
     aaaaaaatac acatcacaaa tcatatgtct acaagaaact cacctaatac cctatagaaa      1560
     tttcccaacc ccaattaatt acaacattta tactcataat tctgctggca atgcctcagg      1620
     aggcgttgct attttagtac acaactcaat tcaacacagc gaaattgatc ttccacatga      1680
     ctttgagtcc ctctgcttaa gaattcactc caaatataca tttaatatta tctgctcata      1740
     catacccccc aggctacatt ttacttacaa caaccttgat aatgtctact gcaacttatc      1800
     aacccccacc cttattactg gtgactttaa tggctggcac acgctatggg gctcacccag      1860
     caacaacagt aaaggaatta cccttgccca atttatccac caatcccctc tagccatact      1920
     aaacgatggc tctcccacac actttagcac ccacaacacc ctcacacacg tcgacctgac      1980
     tctcgcatca gcggccctag cacttgaatc caattggtct atcgaaacaa atacgtttgg      2040
     aagcgaccac tttcctatta taacaacact atttgacact acatctacac caaccatcgt      2100
     accaaaattt aaactagaca gagcaaactg gccaaaatat aaagaagcta gtaactactt      2160
     tagcctccaa cgccctataa gccaaaacct gaacaaagaa gcagccaacc taactaaaat      2220
     agtccatcaa agcgctaact gttctatccc acaaacctca cctaaccgtt tttcaaaacg      2280
     tacggtccct tggtggaacc cccacctaca aacacttaag aaatctaaaa actttcactt      2340
     taatatcctt cgacgaaaca tctccaacgc gaatataata aactacagga aagccaacgc      2400
     cctccttaaa cgcgaaataa aaattgctaa acgaaactca ctcgaaatct tcacctcgga      2460
     aataaatcca aactcctcga cttcccaaat ctggtccaac ctacgcagat tctgtggact      2520
     tcgaccaaga gttggtattc attgcatcgc aaaacccaac tcacccacga aaataacaga      2580
     tagtctagcc atagccaacg aactttgctc cttctggtcc accgaatcaa atgatgaaaa      2640
     tttctcaaca actttcaccc atcacaaaaa taacctatta cccattgccc ataactacca      2700
     accttccact agcgcactta aaatagaatc tgaaatcacc accttcgaac tcaatatagc      2760
     tctttcaaaa caaaaaggaa agtccccggg ccttgatcgg gtatcctacc aaatgctaca      2820
     aaaccttcac ccaacggtaa aaatccgact acgtgatcac tttaacaata tactaaacaa      2880
     ttacattccc caacattaca aacttagcaa aatcatacct attaacaaac ctaatacaga      2940
     caaaacttcc ctgaactcct atcgtcccat atctctcaat tcatgcttcg caaaaaccct      3000
     ggacaagatc atagcaaatc gactatggtg gtttgtttcc tacaacaact cgatcgatag      3060
     tcgtcaaact ggattccgaa aagggaagtc aatatcagac aatctactgg ttttagatca      3120
     cctgatatct tcttccttat ccacaaagaa tcacttatca gtaatctcgc tcgattttac      3180
     aaaagctttt gataaaattg gaatccatac gattgtcgac gaattgcggt cttggaaaat      3240
     aggcccagta atcgtaaact actgcattaa cttcatgacc aatagaaaaa ttaaagtcta      3300
     tgccaacaac cactcctcct tcacccgccc acaacacaac ggcattcccc agggttcgcc      3360
     gctctcagta attttgttcc ttatcgcatt taataaacta aactcagtta ttctcaatca      3420
     caaacagttt aacttttgcg cctatgccga cgactatcac atatttaaaa aaataaacaa      3480
     aaactcacga atagatattg accccctaat cacagatatc ctgacttggt gcgaatactc      3540
     cggtgctgtc ctttcactga acaaatgtaa acaccttcat ttttgcaaaa aacactcctg      3600
     ccaactccga ataaccacta ccctcacacc aatagacaat actgacacat taaaaatttt      3660
     aggaatgaca ttcaacaaga aatataattg gaaagatcac attgctaccc ttgtctcttc      3720
     cctctcaaac cgccttaaca taataaagtg cctatcgagt aataaataca attgtaacgt      3780
     cctcactgtc attaacacta tcaaaacact aataatgtcc aagatcgatt ttggcttacc      3840
     cttttacggt aattccccag aatccataat aaaaccgatt aaaactatat atcactctgc      3900
     cattagatca gcactaggtg cttttcgaac cacccccatc cataacttgc tttacgaatc      3960
     caacatgatg ccgattgata tccgaaccaa ttattccata tccaaaatca taaaacccat      4020
     ccttttatcc aataactctc cacttaaatc aatagtcacc agtatactaa aatcaaagaa      4080
     acgaaaccca aagattccat ccgttctaaa cagatcactc aaatctgcca tagagcttgg      4140
     cttaccaacc aaaccactaa tttttaaaaa acagactaac ccaccttggt gggacatatc      4200
     agactcaata gacacaacac tacacaatct aagcaaatcc accaccccac aactagtata      4260
     ccagcaaaaa ttccttgaat taaaaaacaa atacccatac agcacattta tttacacaga      4320
     cggttcaaaa acccacgacg ccacatcgtt tagcgtagtg accaacaaca caagccaaca      4380
     acacttatta ccgtactaca gctccatatt ctctgccgaa attattgcca tctacaatgc      4440
     aatcctaata gtcaaacact ctcctaaccc atcagtcatc tgttccgact cactttctgc      4500
     tttaaacgcc atagccaatc cctccaataa ctccttctac ccaaccacaa tcagacaaat      4560
     ccttctgaaa accaacaaaa taacaatcgc atggatccct ggtcactgcg gcatacaggg      4620
     caacgaagtt gccgacaaag ccgcaaaaac cgccttctcc ctgccacatc aattctacaa      4680
     taacaataat atatctgaca ttcaacaaca catcaaaaaa cactttaaaa cccaattaac      4740
     agaactattt aataaaacaa acaattatta taaaacaaat aactttaaca aaaacaatat      4800
     atacgactac ggacgtcttc aaaccgaaat acccatacct cgatacacat tcacaaaaat      4860
     tatacgtctc cgattaggac acaccaactt gacccatagc tatattttta cacgcccccc      4920
     cacaataccc tcttgcccac tatgctctag ccaaatcaca tcacctctac acattcttat      4980
     agaatgttct ttcctataca ccctacgatc gtcacttttt tcctcctcaa accccattca      5040
     aacaatattt gacctaaaag caaccaatat aaaaaaataa tacaatatct taaaaacata      5100
     attaacgtaa tttagattaa gcctgtaatt aataatagaa agaatttatt gaagtaaaaa      5160
     aattgattgt tacctaatta atagtttatt ttagctcgta aatttgtaaa gaatgaaaaa      5220
     gaaaaaattg aattttttta gcttaaggcc ccgtagctat agctaaactt aagttcgcct      5280
     gtaaatttta cattatagtc gaacacttaa taataataat aaataata                   5328
//
ID   I-1_DVi     repbase;    DNA;    INV; 3058 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3058
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1940-1940 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. ~87% identical to I-2_DWi from
CC   Drosophila willistoni.
XX
SQ   Sequence 3058 BP; 1020 A; 755 C; 490 G; 791 T; 2 other;
     ataaatataa ttcgtatata ccccccaacc aaagactatt agcaacagat ttaataaata        60
     ttatagagcc agcccaaaaa cctatagttt ttgtagagga ctttaacgtt tggagtccgc       120
     tttgggggtc ctgctcccgg aaccccaaag gttataaagt tgaagatctt atagtcaaaa       180
     caaacttagc cattctaaat ggcggctctg ccacccacca ttctacccac aactccttta       240
     ctaacatcga cctaagtatg gcgcccgcaa ccctggtacc attctataaa tggtccattg       300
     gccaaaactt aggcgggagc gatcatttcc ctattactat taaccttcgc acacatatta       360
     aacctgaaaa atttccggct tccaattagg ttcaaaaccg accatgcaac tggagtacct       420
     tccaatctgt ctgtaaaaat cactttcagt ttccctcggc caacgatctg aacctcttcg       480
     ctgccagaat tacgaaaacc ataaaaacag cagccaacgt agccattcca caaactaatc       540
     ccaaataaca gataaggtac cctgcttggt tcagcccaag tctccaagat ctgagaaaac       600
     aaaagcaagt tatctggcac atctataaat cctctcaaaa ctgtaacaat ctagtagctt       660
     acaaaaaagc gagagccctg tttaaaagag aagctattag ggcaaaacga gaatctttta       720
     gcagtttcac ctctaaaata aacccacttt ccacaaccaa aaaaatatgg gccgatatca       780
     acaaattagt agkgattttc ccagggcctt ttaaatccat cagagacaac aatgtagagc       840
     tccaaaattc agtagacatt ggcaatgcat ttggagctat gtggtccaat tattccaggg       900
     atgaaaactt ctcaaatgcg tataaagtta ataaggaaaa cgttctctct caggcatatc       960
     tgcccaacca catatcctca aattctaagt accttgaatc tcagttcaca ctgatggaac      1020
     tagaattagc ccttcaacac gctaaaggga aaactcctgg gtatgaccgc atctcgtaca      1080
     atatgcttcg aaacttacca atagaaggaa agaaaagaat actagaaatg tacaacataa      1140
     tgttgatggg ggtaactatc cgcacgcttg gaaaacggct acaattatcc caatccttaa      1200
     gccaaacaaa ccttcccacg aattatcatc ctttcgcccc atatccctac tctcctgctt      1260
     gagcaaaaca ctggaaaaaa ttcttgccaa aaggatcatg tggttcatat ccaaaaataa      1320
     acttatcagc cccaaccaaa ctgcattcaa acaacagcac agtaccattg actccctatt      1380
     gcatatccat cattacgcgt cagatgccct ttcaaccaga aatcatgtaa ccatcctggc      1440
     tactgatttc gaaagggcat ttgagcgcgt tggagtgcac acagtactgg agcaactttc      1500
     ccggtggggg gttggtccta agaccttcaa cctcgtgaag gctttcatga ccaagcgatc      1560
     catccgtgtt agagttaata acaccttatc taagttctat aaattacaca tcggcatacc      1620
     acaagggtct ccactctcgg tggttttgtt catgattgcc ttcaactccc tcaataacat      1680
     aatactaaaa cataagaaaa tacaactctc cgcgtacgcg gacgagtcat tatctttagt      1740
     aactgcaaaa atacaaattt actcttcctt acgtttaaac aaatacttaa tgatatcgta      1800
     gaatggggaa aactctcagg agccactctt gctttaaaca aattgttctc ccccgcatac      1860
     catgcagcag tacggcgtag cattgacgcc tttstcacta ctccgacgga atgcctttta      1920
     gctgaagcgg gtcttcctga aatacagacg agaactgcgc aactgacttt caaactcatc      1980
     ctaaaattct ttgctcgacc aacccaattc tgcttaaaga ctttaacaga atggttaagc      2040
     agcgccgaag atttaaagtc ttgtctacta tccgtagatg ttgcagtttt ttcaaaaaca      2100
     tcaattggat atgccatatc gttggaacaa aatcagccca tcccctcctt ggcaactaca      2160
     ggaccacacc gtgaacacct ctctccactt ataaaaaaaa atcagaaaca cctaaaagta      2220
     tatttcagca aatgctagcg ccgaatcgga aaaattcccc aactggagtt ggctctacag      2280
     tgacggatcg aaaacaattg actccactag cttcgcagtt gtaagccaat caggaactgt      2340
     ggtcgcatca ggagtgctcc ctgcatactt ttctatatat tccgccgaag ctgtagctgt      2400
     tctaaaagca attaaacatg ctctcgagct taagggaaaa tttataatat gcagcgacag      2460
     tctttctact ctcaatgcca ttaacaacac atacaaccaa aacagcctga tatgcgaaat      2520
     tcgacatctt tgcatcaaac acgataccaa aataaaactc ctttgggcgc caggtcacat      2580
     gggcataaaa ggtaacgaac tggcagatgc agcggctaaa ctggcaggac agtctccttg      2640
     cctaacagtc atccctggtg tcagagaaga cctgggcaca ccgctttaac ccacgaccac      2700
     ctgcttaaag gaaaagccaa tcccaactgc ccaaaatgcg ggggagaatt atcaatccaa      2760
     cacatattga ataactgccc acaacttaat aacattagga cttgtctatt tggccaaatc      2820
     caacctacct ctcttcttac cacacctact cacaataatg taaaattgct aatcaaattc      2880
     ttagacacca ataacatact aaatagcata taataatata tatataattt aaaataatat      2940
     acatataata ctataaataa tttaactgtc gagtcgatgg ccttagtagc tagcactccc      3000
     tcccgttagt tattatatta tttttttgta taataattaa ttacgtaaac taaataaa        3058
//
ID   I-1_DWi     repbase;    DNA;    INV; 5172 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5172
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1959-1959 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with ~99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..681
FT                 /product="I-1_DWi_1p"
FT                 /translation="MTEPPDIWRKHPPSGDGKFLTISRTDNGNMTNISPFI
FT                 IKKTIDYTCGGEVELCKKTRDGNLLVQTKNPAQTSKLLKLNVMPNDIPIKV
FT                 EEHKALNVTKGVIYSNELRGIDEDTILENLKDQKVQEIKKILSKKYGVLTE
FT                 TGIVIITFALHNLPEHRKMQQQNYLQQL"
FT   CDS           1296..4997
FT                 /product="I-1_DWi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTLTILQWNLNGYSNNYNELLILINRFKPKIISLQET
FT                 HLTNLSQVPIPTNFSMHHTTCSTXKGGVAILVHKSIQHKLISVGQSFDAIT
FT                 VEIHSAKKFYIVAAYIPPNQKFSLVDLETAFPNTSTPTLYTGDFNSWNSYW
FT                 GSPSSNRRGKILAKFIHDHNNIILNNGQPTHFSTHNTFTHIDLAFCSAELK
FT                 INCDFSISDTLEGSDHFPITIKMFSNDQYKTHTRYTQRFLTKQANWDKFER
FT                 LTDELNNITTISPNVNKEASNINKIILQSAYKSIPLCKPPKRQYNVPWWNK
FT                 EIANSREKKILAWKALNRDMTTENIIRYKKLNAQLRRLIRESKARSVHEFT
FT                 SDISPRSTTETIWNKIRRLNGLHKSSQIHCMQDTTTNTLNSDAGEIATSFA
FT                 NHWSRQSEDQLFTSAFVEAKQKTNTTHTYSPPHNSAKFMEQEIGFLEFASA
FT                 LNSLKGHTPGFDKINYSMIQHVSTPLKTRIVTLFNRILQTHIPQIYKISTI
FT                 IPVLKPGQDKTTIEAYRPISLNSCIGKVLDKIISKRLWWFVTTNKLLNSHQ
FT                 LGFQKGRSTADCLLLVDALISRSLSAKRHISLVSLDFAKAFDKVGVHTIIN
FT                 QLKKWQCGPTIIKFIKNFMANRQIRVCVNKNYSNCKPLRNGIPQGSPLSVI
FT                 LFLTAFNSLSELIARHKNINFTAYADDYNILVDLNKEKQSTIKLDNLFENI
FT                 DTWCQTSGASLSLTKCKHLHICRKQNCHPQVSSQSATIENVKELKLLGLSF
FT                 SAKYKWHSHIKNLQKSLNKSLNILKCLSSPKFNCHTYTLVQIVKSICLSKI
FT                 DYGLPIYGRAPKTTIKPIKTALNTALRVALGAFRSTPINNLYFEANIPTIE
FT                 NRTQQLLTKVINPILNSYDTPLKEIINKINKNNRKAYRDSTLQKCINSCFN
FT                 LGITPTPIGKTPKSDPPWFINTNTIDLHLNVFKKGHTSNEIYTKQFAEIKL
FT                 KLNDHTFIYTDGSLKNCITGYSITTENKTLKLGILPLYSSVFSAEIIAIFD
FT                 ATIIATKIKGKVCICSDSLSAIEAIQNINNNTYYPDIIRKTLIKQQPKIML
FT                 LWVPSHVGIKGNEFADEAAKTATISPLFTHPNYNKTDINRHIKNHFSNLNT
FT                 LLIQQTSCWYQEINRHNKYNVDDYLKKLEICQIARKTQIKLIRLRLGHTRL
FT                 THEHRFLQNNPNHCKFCNTNSIMNIEHILNTCTVFQSFRNHIPNQNLIALL
FT                 SNPTPENLKEIIKYLNLTNIMNLL"
XX
SQ   Sequence 5172 BP; 2023 A; 1220 C; 730 G; 1198 T; 1 other;
     tcagttgaat tgtgactctc attgcggtag gtcatacttt cggtgacaat aaacactcaa        60
     agcacaaagc aaagtcagaa aaaacaacaa caaacaacat aatctatttt tggacacaca       120
     taactgttta cgtgtaagaa tcaacaagta acggtgcagc tttacagcaa aaccagcaat       180
     atgactgagc caccggacat ttggagaaaa catccgccgt ctggtgatgg caaatttcta       240
     accatttcgc gaactgacaa cggaaatatg acaaacattt ctcccttcat aataaaaaaa       300
     acaattgatt atacctgtgg aggagaagtt gaactgtgca aaaaaactcg tgatggtaat       360
     cttttagtcc aaaccaaaaa cccagcacaa acaagcaaac tactgaagct caatgttatg       420
     ccaaacgaca tcccaataaa agtagaggag cacaaagcct taaacgttac taaaggcgta       480
     atctactcta acgagctaag aggtatagac gaagacacca tcctagagaa cttaaaagat       540
     caaaaagtcc aagaaataaa aaaaattctt tcaaaaaaat atggagtact tactgaaact       600
     ggcatcgtaa ttattacatt tgccctccac aatctaccag agcatcgcaa aatgcaacaa       660
     caaaactacc tgcaacaatt gtagccaaga cgaacacatt gatactctaa caaagagata       720
     tgcgacaaag agccaagtta cataaattgc cgaatcaaca aattaccgac ttataatcat       780
     cagcccagag ataaaaaatg cccagtcttc ctcacccacc tcgaagtgca ggccataaaa       840
     gctcacgaaa aagttgacaa tagaacagca tggtcgattt acaaaaaacg acacccacat       900
     gatggctcgc tctactcttc agtagcaaaa tctcacctgt acaacaataa aaatcaaccg       960
     caacaagaag acaatgcaac acaaccagaa gcgccaccct aacaatcccg gaaagcacta      1020
     agcgaaaagc agttcagtac gaatcggaac ccgaagacat gtcaaccgac accctagacg      1080
     accaaccaag ttcaagcagc aagtctaaaa accctagcat actcccacat aatatatcta      1140
     atagatcgaa acgtatcata acaagaagca tgactaagtc taagaacact aacccgtctc      1200
     caaattcttt gaaaactctc ataaaatcta acaacgtcaa aatttaagat ctaaatctaa      1260
     actagcacta catctaatca ctctataaac ttaacatgac actaacaatt ttgcaatgga      1320
     acctcaatgg gtattcaaac aattacaacg agctcttaat cctcataaat cggttcaagc      1380
     caaagataat ttctttacaa gaaacccacc taactaactt gagtcaagtt ccaattccaa      1440
     ctaatttttc aatgcaccac actacctgct ccacakcaaa gggcggcgtg gctatattag      1500
     tgcataagtc aattcaacat aaactgattt ccgtcggcca atcatttgat gccatcacag      1560
     tcgaaattca ctcagcaaaa aagttttata ttgttgccgc ctatataccc cctaatcaaa      1620
     aattttcttt ggtagacctt gaaacagcat tcccaaatac aagcacccca accctttata      1680
     caggagactt taacagttgg aacagttact ggggctcacc ttctagcaat cgcagaggta      1740
     aaattttagc caaatttatt cacgaccaca acaatatcat cctaaacaat ggtcaaccca      1800
     cacacttctc tactcacaac acattcacgc acatagacct tgcattctgc tcagcagaac      1860
     ttaaaataaa ctgcgacttc agcatcagcg acactctcga aggaagtgat cacttcccta      1920
     tcaccataaa aatgttctcg aacgatcaat acaaaactca cacacgatac acacaaagat      1980
     ttttaacaaa acaagcaaat tgggataaat tcgaaagact gactgacgag cttaacaata      2040
     taacaacaat atccccaaat gttaataagg aagccagtaa catcaacaaa attatcctac      2100
     aaagcgcata caaaagtatc cccctctgta aaccacccaa acgtcaatac aacgtacctt      2160
     ggtggaacaa ggaaatagct aacagtaggg aaaaaaaaat actagcatgg aaagccctta      2220
     atcgagacat gactacagag aatatcatca gatataaaaa acttaatgct caacttcgta      2280
     gattaattag agagagcaaa gctcgaagtg tacatgaatt tacctctgac atttccccta      2340
     gatctaccac cgaaacaata tggaataaaa taagaagact taacggactc cacaaatctt      2400
     cccaaatcca ctgcatgcag gacacgacca caaatacatt gaattcggac gcaggagaaa      2460
     tagcaacatc ctttgcgaac cactggtcta gacaatcaga ggaccaacta ttcacctctg      2520
     catttgtaga agcaaaacaa aaaacaaata ctacccacac ctatagccca ccacacaact      2580
     ctgccaaatt catggaacaa gagataggct tcttagaatt cgcatcagca cttaacagcc      2640
     ttaaaggaca tacaccaggt ttcgacaaaa tcaattacag catgattcaa catgtatcaa      2700
     caccacttaa aactagaatc gtcactctat tcaaccgcat cctacaaaca catatcccac      2760
     agatttataa aatcagcaca ataataccag ttttaaagcc gggacaagac aaaactacaa      2820
     tagaagcata cagacccata tccctaaact catgtatcgg aaaagtcctg gacaagataa      2880
     tttcaaagcg gctatggtgg tttgtcacaa caaacaaact acttaacagc catcaactag      2940
     gcttccaaaa aggaagatca actgccgatt gtctactcct tgtagacgct ctgatcagta      3000
     gatccctttc agcaaaaaga cacatatcac ttgtctcgtt agattttgcc aaagcgtttg      3060
     ataaagtcgg agtccacacc attattaatc aattaaaaaa atggcaatgt ggccctacaa      3120
     taataaaatt cattaaaaac ttcatggcca ataggcaaat cagagtgtgc gtcaataaaa      3180
     attattcaaa ttgcaagcct cttcggaacg gtattccaca aggatcacca ctatcggtta      3240
     tactgtttct aacagcgttt aatagtctct ctgagttaat agcaaggcac aaaaatatta      3300
     acttcaccgc atacgcagac gactacaata tattagttga tctcaataaa gaaaaacaaa      3360
     gtacaataaa actagacaat ctatttgaaa acattgacac ttggtgccaa acttcggggg      3420
     catcgctgtc tctcacaaaa tgtaaacacc tacatatttg tagaaaacag aattgccacc      3480
     ctcaagtctc gtcccaatca gccaccatag aaaacgtcaa ggaactaaaa ttgctaggac      3540
     tctcctttag tgccaagtac aaatggcatt cccacataaa aaatttgcaa aagtcgttaa      3600
     ataaatccct taatattcta aaatgtctct cgagcccaaa atttaactgc cacacataca      3660
     cattagtaca aatagttaaa agcatatgcc tctcaaaaat agattatggc cttccgatct      3720
     atggtagggc ccccaagaca acaatcaagc caataaagac cgcactaaac acagcactgc      3780
     gagtcgctct gggcgctttc cgctcgacgc caataaataa tctatatttt gaagcaaaca      3840
     tcccaaccat tgaaaacaga acgcaacagc tattgaccaa agtgattaac ccaatcctta      3900
     attcgtacga caccccactt aaagaaataa taaataaaat aaataaaaat aataggaagg      3960
     cgtacagaga ttccacctta caaaaatgca taaattcttg cttcaatttg ggtattacac      4020
     caaccccaat aggaaaaaca cctaagtcag accctccgtg gttcattaac acaaatacaa      4080
     tcgacctaca cttgaacgtt tttaagaaag ggcacacgag caatgaaatt tacactaaac      4140
     aatttgcaga aattaagctt aagcttaacg atcacacatt tatatacacc gacggttctc      4200
     tgaaaaactg tataacaggg tattcaatta cgacagaaaa caagactctt aaattgggga      4260
     ttctgccact atactcatcg gtattttcgg cagaaatcat tgccatattc gatgcaacca      4320
     taatagccac caagataaaa ggcaaagtat gcatctgttc tgactcgttg tcagcaattg      4380
     aagctattca aaatatcaac aacaacacat attacccaga cataattcga aaaacactaa      4440
     tcaaacaaca gcctaaaatc atgctcctat gggtccctag ccatgttggt ataaagggca      4500
     acgaatttgc tgatgaagca gcaaaaacgg cgactatatc acccctcttt acgcatccca      4560
     attataacaa aacagacata aacagacaca ttaaaaacca cttctccaac ctaaatacac      4620
     tactaattca acagacatca tgctggtatc aagagataaa cagacataac aaatacaatg      4680
     ttgatgacta tcttaaaaaa ctagaaattt gccaaatagc tagaaaaacc caaataaaac      4740
     ttataaggct acgactagga catacgagac taacacacga acaccgattc cttcaaaata      4800
     atcccaacca ctgtaaattc tgcaacacaa attctattat gaatatagaa catatcttga      4860
     acacatgcac ggtgtttcaa agctttcgaa accatatccc aaaccaaaac cttatcgcac      4920
     tcctatccaa cccaacccct gaaaatctaa aagaaattat aaaatacctc aatctaacca      4980
     atattatgaa cctcttataa gataagctag catagcaaaa taatatattc tagactaaga      5040
     aaattgtatg aattatatta aaagaatgaa tatctaaaca tgaaccagcc gaaggcctta      5100
     gcagctatgg ctgtcctccc tgtagctata gatttatcta taagctaaca ttgtacaaat      5160
     aaataaataa at                                                          5172
//
ID   I-1_DYa     repbase;    DNA;    INV; 5368 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5368
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1919-1919 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..1366
FT                 /product="I-1_DYa_1p"
FT                 /translation="MPPEINRLFKSSDTGPKFIIIKRTDNETFKNVSPFLR
FT                 KKVIDYACNGEVETAKVTKEGSMLIKTKDTLQAQKLLKMTNFHNFPVEVSE
FT                 HKTLNFSKGVIYSNDLRNIDDETIVNELKPQNVTEIRKIKKIENNEPKETG
FT                 LIIITFASLTLPDTLMIGYERVNVRPYIPLPLRCRNCLRFGHPTTACSSNK
FT                 ICINCSAEQXTTTDEICTKTKFCVNCKYDIPDNKHSPLEKTCPAFIKQKEL
FT                 TSIKTLEKVDHKKALMIYYSRHTHQPTLYSTITTEKTTKEATPITKLPIVL
FT                 PNSLQNGKNTASTSSAAKPPSRNTTTYDDLDTLMDTTPITASTSTLNSSIQ
FT                 EDLKLRIYTNKQNTLAKPLKSKEKTEQKQKKNNSNKTPLLNSDSDSI"
FT   CDS           1477..5130
FT                 /product="I-1_DYa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKVIQWNMNGYINNYNQLQIIIKKHNPKIISIQETH
FT                 LHSTQNIPIPINYTIYHENTATNSFGGVALLVHNSLQHQNVQISAFDFDTI
FT                 AVTIHSKFKFTIXSSYIPPNKPFTIQNLRNIYDNLQPPLLITGDFNSWHRS
FT                 WGSQTNNQRGNTLFKFINQNSLVTLNNGSETHFTTHHTFTHIDLSIXSPPI
FT                 NLNSKWYTDSSLSGSDHYPIHIDLFEEHNMNNPIERPRFNLKKANWPLFQE
FT                 IADKLSIEKPPSSNVNKELAIITRIIIQSANESIPQSHQSRRQRNVPWWDQ
FT                 TLQQLRNEKQTAWKNLNRNTNMTXVLAYKKANAKLKREIKIRKKSATESFT
FT                 TEISPSSPIGKIWTKINHFCGLKTRHHIHCLTDPNDTTQSIMDXNEIANXL
FT                 CTHWSKASLDXNFHTAFIQRKSNPIPHTHVPSPTALSIEQDISLTELLAAL
FT                 NQLKGKTPGRDRISYPMLKNLSANLHKRLLKLFNNILSSHIPQQLKVSSVI
FT                 PIPKPNTDKTNINSYRPISLNPCISKVLDKIIAKRLWWLASNSKLLDNRQM
FT                 GFRKGKSVSDSLAMLDYQITASLSKKSHASIISLDFAKAFDRVGIHSIIDE
FT                 LIAWKIGPRISNYITYFLTNRKITVLSNKSYSNPQPLHNGIPQGSPLSVIL
FT                 FAIAFNQLNKILAAHKQMDFTAYADDFTIIYNLGKKQNNLNLDALLNDINQ
FT                 WCNYSGASLSTNKCKHLHVCRKRTCNFTLQTNDTPIQNVTSLKILGITIAR
FT                 NYRWNKHIENLTLELAKRLDVIKCLANKKFCCNTNTIIYVVKSIIMSKIDY
FT                 GVHIYGNAPKSTLSKLRTIYHSAIRIAFNAFRTTPINNLLHEANILPIEHR
FT                 TTYATQKNIKIIINSKFSPIEKIYNKIKNSKRIPKVPSSLHNTIEQLKKVN
FT                 IYVSPETSRKEKTPHWLCSNTSTNTXLHTSSKAETAPSIYQQXFNELKNTL
FT                 AGRHFLYTDGSKSASGVSYSVTTETEIIYHHILPQYSSIYTAEIAAILTAC
FT                 NHASKQRGKFAICTDSLSALKEIENIKSQNYYTTSIRNILNKYKRNKILIL
FT                 WVPGHCGIPGNELADETAKNAHNFPLITQKNFNTSDILEHIKXNTVTFKTS
FT                 IFNNSSIHYKNISHDSTPTKNISRSDSIKFTRIRLGHTNLTHSHILNKTPP
FT                 PICTTCNTNITLQHILLDCPDLQQNRSNLLKQTIREITSFENIHQTIQFLK
FT                 NTXLYHTI"
XX
SQ   Sequence 5368 BP; 2223 A; 1399 C; 634 G; 1094 T; 18 other;
     ttatatggcc agtaccactc caagcttcga gaagtaaaga cgtgcgacta attaacagcg        60
     gacctatacg ccttatcagt taaaaaccaa caacaacact aaccatataa aaaacttttt       120
     tggacaaaca aacgacatta aaagagaaca aaaaacaaaa aagtgacaaa gcaaaaaggg       180
     ctagtgccca acaacaatgc ctcccgaaat aaatagacta tttaaatcat ccgacactgg       240
     acccaaattc ataatcataa aaagaacaga caatgaaaca tttaaaaacg taagcccatt       300
     cttaaggaaa aaagttattg actacgcatg caacggtgaa gtggaaacag ccaaggtcac       360
     aaaagaagga tcgatgctaa tcaaaactaa agacacccta caagcacaaa aacttctaaa       420
     aatgactaac tttcacaact tccccgtaga agtaagtgag cacaagaccc tcaacttctc       480
     caaaggagtt atatactcca atgatctccg taacatcgac gacgaaacaa ttgtaaatga       540
     actaaaacca caaaacgtga cagaaatacg gaaaattaaa aaaattgaaa acaacgaacc       600
     taaagaaact ggcctcatca ttatcacctt tgcatcacta acgcttccag atacactgat       660
     gattggatac gagagagtga atgtacgccc atatattcct ctwccactca gatgccgaaa       720
     ctgcctaaga ttcggacatc ccacaactgc ttgctcatca aacaaaatat gcatcaactg       780
     ctccgcagaa caawacacaa caacagacga aatatgcacc aaaactaaat tttgcgtaaa       840
     ctgcaaatac gatatcccag acaataaaca cagcccatta gaaaaaacat gcccagcatt       900
     tataaaacaa aaggaactaa catctataaa aaccctcgaa aaagtcgacc acaaaaaggc       960
     cctaatgatt tactactcac gacataccca ccaacctact ctatactcaa ccataacaac      1020
     cgaaaaaaca acaaaagaag ccacgccaat caccaaacta cccatcgtct tacccaattc      1080
     acttcagaac ggaaaaaata ctgcctccac ctcttcagcc gctaaacccc catctagaaa      1140
     caccacaaca tatgatgacc tcgacacact aatggacacc accccgatca ctgcatctac      1200
     atcaacactg aactcctcca tacaagaaga cctaaaacta agaatctaca ccaacaaaca      1260
     aaacactctc gccaaacccc ttaaatctaa agaaaaaact gaacaaaaac aaaaaaaaaa      1320
     taatagcaac aaaaccccac ttcttaatag cgacagcgac agtatctaat acaaacaaaa      1380
     ataaaataaa tacaaaaaaa gtagaatgca attatacatc aaaacaggta aattgtctct      1440
     atttcccaaa ttaattaaaa tcccaattta aaaaaaatgc ttaaagtaat acagtggaac      1500
     atgaacggtt acattaacaa ctacaaccaa ttgcaaatta ttataaaaaa acacaaccct      1560
     aagataatat ccatacaaga aacacactta cactctactc aaaacatacc tattccaata      1620
     aactacacca tctatcacga aaacaccgcc acaaacagtt ttggaggagt tgctctcctc      1680
     gtccataact cattacaaca tcaaaatgta caaatcagcg cctttgactt cgacacaata      1740
     gcagtaacaa ttcactccaa attcaagttc accatakcat catcttacat cccacccaac      1800
     aaacctttta caatacaaaa cctcagaaat atatacgaca acttacaacc accccttcta      1860
     ataactggag attttaatag ctggcacagg agctggggct cacaaaccaa caaccaaaga      1920
     ggaaacacat tatttaaatt tatcaaccaa aactcactcg taacacttaa caacggctca      1980
     gaaacccact ttaccacaca tcatacattc acacacatwg acctttccat tgsatcaccc      2040
     cctattaacc tgaactcaaa atggtatacg gacagctcgc tttcaggcag cgaccattac      2100
     ccaattcaca tagacctatt cgaagaacat aacatgaaca acccaatcga amgaccaaga      2160
     tttaacctta agaaagcaaa ctggccccta ttccaggaaa ttgcggataa gctgtctatt      2220
     gaaaagcccc caagctccaa tgttaataaa gaactcgcta ttattacaag aataataatt      2280
     caatccgcca atgaatccat cccccaatca caccagtcta gaagacagcg gaacgttcca      2340
     tggtgggacc aaaccctcca acaattaaga aatgaaaagc aaacagcatg gaaaaatctc      2400
     aacagaaaca ctaatatgac aamcgtatta gcctacaaaa aagccaacgc caaactcaaa      2460
     cgagaaataa aaataagaaa aaaatcagca acggaaagct ttacaaccga aattagccca      2520
     agctcaccca tcggaaaaat atggactaaa ataaaccatt tctgcggcct gaaaactagg      2580
     caccacatcc actgccttac cgatcccaat gacacaacac aaagcattat ggacaawaat      2640
     gaaatagcca acwacctctg cacccactgg tctaaagcat cgcttgacag maacttccac      2700
     acagcattca tacaaaggaa atcaaatcca atccctcaca cacacgtccc atcccctaca      2760
     gcgcttagca tcgaacagga catatctctt acagaactcc ttgctgcact taaccaactc      2820
     aaaggaaaaa ctccaggccg agaccgtata agctatccta tgcttaaaaa cctatccgca      2880
     aacctacata aaagactgct aaaacttttc aacaacatcc ttagctcaca catacctcag      2940
     caacttaaag taagcagcgt cataccwata cccaaaccga acacggacaa aaccaacatt      3000
     aactcctacc gacccatwtc actcaatcca tgcatatcca aagtccttga taaaataata      3060
     gcaaaacggc tatggtggct tgcttcaaat agcaagcttc tagataaccg gcaaatggga      3120
     ttcagaaagg gaaaatcggt ttctgattct ctagctatgc tagattatca gataactgca      3180
     tccctatcaa agaaaagcca cgcgtckatc atctcactag acttcgccaa agcgtttgac      3240
     agagtaggca tccacagcat cattgacgaa ctcatagcct ggaaaatagg cccaaggatc      3300
     tccaactaca taacatactt cctcaccaat agaaaaataa cagtcctttc caacaaatcc      3360
     tactcaaacc cccaaccact acacaatgga ataccgcaag gatccccctt atctgtgata      3420
     ttattcgcaa tagcattcaa ccaattaaac aaaatactag ctgcgcacaa acaaatggat      3480
     ttcactgctt acgccgacga cttcacaata atttacaatc ttgggaaaaa acaaaacaac      3540
     ctcaacctag acgcacttct caacgacata aatcaatggt gcaactactc gggtgcatcc      3600
     ctctctacca acaaatgcaa acatctgcac gtttgtagga aaagaacctg caacttcaca      3660
     ctgcaaacca acgatacccc catacaaaat gtaacgtccc tcaaaatact aggaataaca      3720
     atagccagaa actacagatg gaacaaacac atagaaaatc ttactttaga actagctaaa      3780
     agactagacg tcattaaatg tctagccaac aaaaaattct gctgcaacac aaacacaata      3840
     atatatgtgg tcaaatcaat tattatgtcc aaaatagact acggcgtaca catttatgga      3900
     aatgccccaa aatcaaccct gagcaaacta agaacgattt accactcagc aataagaatc      3960
     gccttcaatg cctttcgcac caccccaata aacaacctat tgcatgaagc taacatactg      4020
     ccaatagaac atagaacaac atatgcaaca caaaaaaaca tcaaaatcat aatcaactcc      4080
     aagttctcac caattgaaaa aatttacaac aaaattaaaa attccaaaag aataccaaaa      4140
     gtcccgtctt cactacacaa cacaatagaa caactaaaaa aagtaaatat ttatgtatca      4200
     cccgaaacaa gcaggaaaga aaaaacccca cactggctgt gcagtaatac aagcactaac      4260
     accwcactac acacctcatc caaagcagaa acggcaccat caatatacca acaaaakttc      4320
     aatgaattaa aaaacacact agcaggcaga cactttcttt acacagatgg atccaagtca      4380
     gctagcggag tctcatatag cgtaacaacg gaaacagaaa ttatttacca ccatatactc      4440
     ccacaatact cctccatata tacagccgaa atagcagcaa ttctgacagc atgcaaccac      4500
     gccagcaaac aacgaggaaa atttgcaatc tgcacagatt ccctatcagc cctaaaagaa      4560
     attgaaaaca taaaaagcca aaactactac accacctcca tcagaaatat cctaaacaaa      4620
     tataagagaa ataaaatctt aattctatgg gtcccgggac actgcgggat tccaggaaac      4680
     gagctcgcgg acgaaacagc aaaaaacgca cataatttcc ctttgattac ccaaaaaaac      4740
     ttcaacacat cagacatctt ggaacacatc aaacwaaaca ctgtaacctt taaaacttca      4800
     atatttaaca actcatcaat ccactacaaa aatattagcc acgacagcac cccgacgaaa      4860
     aacatctcac gatcagactc aataaaattc acaagaataa gactaggaca caccaatcta      4920
     acccacagcc acatactcaa taaaactcca ccaccaatct gcacaacctg caacaccaac      4980
     ataacattac aacatatatt actcgactgc cctgaccttc agcaaaacag atcgaacctc      5040
     ttgaaacaaa caattagaga aatcacctca tttgaaaaca ttcaccaaac aatacaattc      5100
     ctaaaaaata cgaamcttta ccatacaata taagcaaaaa taaaaataaa aaatcatatc      5160
     cataaatatc aacctacaca taaataaatt agctttaaaa aactattaca tagtaattaa      5220
     ccgtaaaata agaacctcmc ttgtacatat aatataacca aacccaaaca aaatgtatat      5280
     aacttagctt aaggccctca gctgctatag ctaatccaaa attccgcata attttaatca      5340
     tgcgttaatt tctcaataat aataataa                                         5368
//
ID   I-1_Hmel    repbase;    DNA;    INV; 5519 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   an I element from Heliconius melpomene.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-5519
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1489..5253
FT                 /product="I-1_Hmel_1p"
FT                 /translation="SQLLMNFLYRPTLPKTYSKSLKSXTMAPLXFLQWNSK
FT                 SIRAKKHELLXIISLHNPVIIALSETWLVPDSRFRVPGFACLREDRNDGYG
FT                 GSAILIQHSSPYSRIPLPSHSQQLNAVAVRALGISFLSVYIPHPSPSIFLE
FT                 LKSIISSLPSPVVVLGDFNTHHTLWGCYYCDGFSPSLVDMIDDVDLCILND
FT                 GSPTRRVNPNQNPRSAIDLSLSSPSLASQLSWSVLPSTHGSDHFPILLSLN
FT                 NRLPPTPXPXLPHKFNLKKANWNEYADSVDCMLCNLSESGNYESIFVYYEG
FT                 FVSAIMSAADLHIPKYRSIQNWMHFNPWWDQECSDSVLRRTSAEESYAACM
FT                 TMENFIDYRRKDAKFRNCIWKKKKRGWISFCESLSPRSSSSLVWTNVKRFR
FT                 RSLNNVSSPNSNNPSVWLNDFANKLAPPFVPSQDLFISTPVESSEEMDXPF
FT                 SFEELKNVLTDLKDTSPGEDGISYSFITKLNDKSKHHFLNMINKIFQSGNI
FT                 PNSWKSQIVIPILKPGKCPSDFNSYRPIALASTISKIVERLLKNRLEWIVE
FT                 SRNILAPSQFGFRKGLSTIDSLSILTTDIRRAFAKGEYLVGVFLDVASAYD
FT                 NVLLPVLRQKLRQLSIPPRMSHYICNLLTGRSVSVRHPLLTIPSRLVWKGL
FT                 PQGSALSPLLYNIYTHDLELSVNXFCNILQYADDIVLYYSSNSVEDITFRL
FT                 NTALHYLNQWLSEHGLALSVAKCQAVVFTKKRVIPNFQILCDNIPIHLTEN
FT                 VKFLGIILDKRLNGVAHAEYLSRKCEKGINALRAVSGVWWGAHPYTLKLLY
FT                 NAIIRSHIDYGLFVLDPFNKLPTEKLNRIQYKCLRIILGAMKSTPTNALQV
FT                 ECVDPPLPIRRQFLSDRFVSKMLQLSSHPLRSKLSKLADLIPQGKPLPYLL
FT                 DSFLRLTSLPNPLTCFPSNPLFLTPYXALVHSPCIVTNLGLTKGDPGTNTK
FT                 FQAIVNENFSNHXLIFTDASKLSKESCVGAACWIPKFKIILQFKCPPESSV
FT                 FTGEAVALLEAVLFTHSHNFKQTVIFTDSLSCLMALKGSPFYSKLRSSIVL
FT                 RIRKELYSCHLKGLDVTLVWIPGHSGISGNESADSCAKSAIQCGTLDHFSN
FT                 SAQDLMSLADXHLHKSWNNFWXXSKSHKGKYYAXIQPDIPRRPWFYSQRFI
FT                 ERRIITTICRLRLGHASTPVHLAKIRVRDHSLCECGLDDGSPSHILFSCPK
FT                 LTRPLYDVLPHKVPRPLNVQCLLMFVFSPLCKFLCKYIKLNKIKL"
XX
SQ   Sequence 5519 BP; 1490 A; 1177 C; 997 G; 1807 T; 48 other;
     ttcgctgacg tttgttttgg ttgacacacg tgttcgtgaa aatatctttt tttagtabtg        60
     aaaatgttta ttttacatag tggaaacaat atataatagt gtaaatagat ccatactaat       120
     aaggtgattg gtaatagtaa gtagttgtgt tgtcttatag tttagattag ttttagtwta       180
     tagttaggtt attttatttt aagatggatc ctgatcctcc acctgacccc cctgatcctg       240
     gggggrgtaa tgtaaattct acagttcaag ywrtkaatag aaaaaggcaa gttgaggaaa       300
     catcctcaaa ccaggatatt attaaaaaaa ctattataga cccatccacc gccactcctt       360
     ccatccagaa tgtatggacc caccctgcct tatccgatgc cccaaaatcc tatattagta       420
     ctgataaagg tccttttatc gtgtatgtgt caagggaatc tcctgacccr tctgcaggga       480
     cctctwtaag agccattaaa tttggtcaat ttctccatac taataaaatc actgatatag       540
     ttaatgatgg agttaaaaat gtgggtcgca ataaaatcag tgtccaattt acatctgctg       600
     atgcagcaaa tagatttttg aataaycctg ttmttagtct atgtaaatat gtttgtgtaa       660
     tcccgacatt taatattaca aggatgggaa ttgtaaaagg rattcccgtt gaatggtctt       720
     tggaagagtt tgttggctca ctgatattcc ctastgcrtg cggagaagtt ataaaagcaa       780
     gacsaatgaa ccgsaagaat gtaagtgagg gtgtagttac atgggttcca actcaaactg       840
     ttgtaattac tatacgtggy cwacaaytgc ctgaaagagt gttctcctat aaatctgtcc       900
     ttaatattga actttataaa tatcctacaa tccagtgcct taattgctgt cgttttggtc       960
     atgttaagtc acagtgtaga tcaaagccaa ggtgctatag gtgttcccag tytcatactg      1020
     gtgaygcatg tgacatccgg caggaaaatt caacctgcat ccattgcaca gctaaacatt      1080
     ttgcaactga taaagggtgc cctgagtttg taagacaaca gaacattaag acggttatgt      1140
     cgcaagagtg tatttcctat atggaagcat cctctcggtt cccatctgtc caacgttcct      1200
     atgcagatgt tgctaaggaa atgttctcac ctcctgtttt cacaaactcc caatcccaac      1260
     aaagcagacc tgctacttcc tctaaatcct attgtaaaac agttttccaa gctccccgtc      1320
     cccacgctcc tatggcaaag ggatacaata gacaagctca ccagtccatt attagcaatt      1380
     gttcctcgtc ccttcctaat ggttgtgcac taaatcaagg ttctgacagt ccagcagaat      1440
     ctacaaagga tctgttaatt gctttgactg acactcttgt gagcataatc tcaactgctg      1500
     atgaacttcc tttaccgtcc tacgttgccc aaaacctact caaaatcttt aaaatccttm      1560
     acaatggctc cactatyctt yctrcagtgg aatagtaaaa gtattcgtgc taaaaagcat      1620
     gaaytacttt mtattatttc tctgcataat cctgtcatta ttgccctctc agaaacatgg      1680
     ttggtgcctg actcccgatt cagggtgcca ggtttcgcct gtttaaggga ggacagaaat      1740
     gacgggtatg gaggtagtgc tatcctyatc cagcactcyt ctccmtattc ccgtattcct      1800
     ctcccttctc atagtcaaca gttgaatgct gttgctgtga gggcccttgg tatttccttc      1860
     ctttctgttt acatccctca tccttcccct tccatctttc tagagcttaa gtctattatc      1920
     tcttcgcttc ctagccctgt ggtggtcctg ggtgatttta acacccatca cactttgtgg      1980
     gggtgttact actgtgatgg attttctcct tcgttggtgg acatgattga tgatgtggat      2040
     ctctgcattc tcaatgatgg vtcaccgact cgtagggtta atccaaatca gaaccctagg      2100
     tctgctattg acctttcctt atcttctcct tctcttgctt cccaactatc atggtctgta      2160
     cttccatcta cccatggtag tgatcatttc ccgattttgc tgtccttaaa taatagactt      2220
     cctcccactc ctantccttm ccttccccat aaatttaatt taaaaaaggc caactggaac      2280
     gagtacgccg actctgtgga ttgcatgttg tgcaatcttt ctgagtctgg taattatgag      2340
     agtatctttg tttactatga agggtttgtc tctgctatta tgtctgctgc tgacctacat      2400
     atccccaaat accgctccat tcagaattgg atgcatttca atccctggtg ggatcaggaa      2460
     tgctctgatt ctgtccttcg gcgaacatct gccgaggagt catacgcagc ctgtatgact      2520
     atggaaaatt ttatcgacta cagacgcaag gatgcgaagt ttagaaattg catttggaaa      2580
     aagaaaaaac gtggttggat aagtttttgt gaatccctta gtcctcgttc ctcttcttcc      2640
     cttgtttgga caaatgttaa gagatttcgc cgatctctta acaatgtcag cagtcccaat      2700
     tccaataatc cttctgtttg gctcaacgat tttgcaaaca aattggctcc tccttttgtc      2760
     ccatcccaag atttatttat atccacgccg gttgaatctt cggaggaaat ggatbbtcct      2820
     ttttcctttg aagaacttaa aaacgtctta acggatttaa aggataccag tccaggtgag      2880
     gatggtattt cttactcctt tattacaaaa ttaaatgata aatctaaaca ccattttcta      2940
     aacatgataa ataaaatatt tcaatcaggc aatataccca actcatggaa gtcccaaatt      3000
     gttatcccta tcctcaaacc tggaaaatgt ccttcagatt ttaattccta tagacccatt      3060
     gccctggcat ctactatatc taagattgtt gaacggcttt tgaaaaatcg actggaatgg      3120
     atagtggaaa gtaggaatat cttagcgccc tctcagtttg gctttagaaa ggggctaagt      3180
     actattgata gtctcagtat tcttactaca gatattcgac gagcctttgc caaaggagag      3240
     tatttggttg gtgtcttttt agatgtcgca tctgcatatg ataatgttct tcttccggtg      3300
     ctcaggcaga aattgcgtca gctgagtatt ccgccgagga tgtcccatta catatgtaat      3360
     ctgctgaccg ggagatcggt atctgtaaga catccacttc ttactatacc ttccagactt      3420
     gtctggaaag gtcttcctca aggttcagct cttagtccgc tgttgtataa catatacaca      3480
     catgaccttg aattatctgt taatartttc tgtaacatcc ttcagtatgc tgatgacatc      3540
     gtcctctatt acagctcaaa ttctgtggag gacataactt ttcgtttaaa tactgccttg      3600
     cactatctta accagtggct ctctgagcat ggcctggcat tgtcggtagc taaatgtcaa      3660
     gcggtcgtgt ttacaaaaaa gagagtaatt ccaaattttc aaattttgtg tgataatatt      3720
     cccattcatc taacagaaaa cgtcaaattt ttaggcataa tacttgataa acgattgaac      3780
     ggagttgctc atgctgaata tctcagcagg aaatgtgaaa aaggcattaa tgctttgaga      3840
     gctgtgtctg gtgtgtggtg gggcgcacac ccttatactc taaaactgct gtacaatgct      3900
     ataattcgca gtcatattga ctatggatta tttgtgttag acccctttaa taaattacct      3960
     actgaaaaat taaaccgaat acaatataaa tgtcttcgga ttatcctagg tgcgatgaag      4020
     tctactccta ccaatgcatt gcaggtggag tgtgtagatc ctccacttcc tatccgccga      4080
     caattccttt ccgatcgatt tgtgagtaaa atgttgcagc tgtcttccca tcctctacgg      4140
     tctaagctat ctaagctagc tgatctcatc cctcaaggca aacctttacc atacctgctt      4200
     gatagcttcc ttagacttac ctctctccct aatcctttga chtgttttcc ttctaatcca      4260
     ctattcctta caccgtataa bgccctagtt cattctcctt gtatcgtcac aaatcttggc      4320
     ctaaccaagg gagatcctgg caccaacaca aaatttcaag ccatagtaaa tgaaaatttt      4380
     tcaaatcacv tcctcatctt tacagatgca tcaaagcttt cdaaggaaag ctgtgttggt      4440
     gcagchtgct ggataccaaa attcaaaatt atattacaat ttaaatgccc tcccgaatca      4500
     tctgtgttca caggcgaggc tgttgctttg ttagaagcag tcctgtttac acattcccac      4560
     aattttaaac agacggttat ttttactgac tcactaagct gcttaatggc cttaaaggga      4620
     agcccatttt atagtaaatt gagatcttca attgttttaa ggattcgtaa agaattgtac      4680
     tcttgtcatc taaagggttt ggatgttact ttggtgtgga ttccaggaca ttctggaatc      4740
     agtgggaatg aatctgcaga ctcctgcgct aaatcagcta ttcagtgtgg cacattagac      4800
     catttctcca attccgccca agatctgatg tcccttgcgg ataytcatct gcataagtcc      4860
     tggaataatt tctggartgd gtcaaaatch cataaaggta agtattacgc chttattcaa      4920
     cctgatattc ctaggcgacc ttggttttat tctcaaaggt ttattgaacg gaggattatt      4980
     acaacaatct gtcgcttacg tcttgggcat gcttctactc ctgtacatct agctaagatc      5040
     agggtcaggg accactctct gtgtgaatgt ggcctggacg acggctcccc ttcccacatc      5100
     cttttctctt gtcctaagtt aactcgtccc ttatatgatg tccttcctca taaagtccct      5160
     cgtcctttaa atgttcagtg tttgttaatg tttgtgttta gtcctttatg taaattttta      5220
     tgtaaatata ttaaacttaa caaaataaaa ctttaaacta acahccatgt aaaatattat      5280
     ttattactaa tctaatgtgt tgtgtatata ttgtaaattt gtgtttgttt tgttttaggt      5340
     gaaggctgta ctaacacagg atctcttttt tttacatgta ttctataatt gtgtatattt      5400
     atctttttta ttaccggtca atttccttcg tgtgttttcc atacaacgtg acattggcga      5460
     aatgaattgt gctcaactgg cacgctcgaa acgccatatw tcgagaaatc aatcaaacc       5519
//
ID   I-1_HMM     repbase;    DNA;    INV; 2657 BP.
XX
AC   .
XX
DT   04-SEP-2012 (Rel. 19.10, Created)
DT   04-SEP-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2657
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2794-2794 (2014).
XX
DR   [2] (Consensus)
XX
CC   Temporarily classified as I. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2559
FT                 /product="I-1_HMM_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="QNYEILKEKIQSFQKLLRRAQIESWNRFCTSIGESTS
FT                 PLDMWNQMRWIKGYKXQXTNIDDTMATNLLSSLXPDSVCXXSPLFNSSNPQ
FT                 LESRITENELRSCIKSKDTAPGHDDISYSXVNYLSSNALTVLVSIYNRILI
FT                 NSXIPKQWRYISVIPIPKPGRDISNAGALRPISLISCLCKXFHSVLQKRLE
FT                 WYIENLDIYSLVKTLDDIGIGSIMCXYIWKILSERYLQINVNNNIXRKTCQ
FT                 GLAQGDPLSPLLFNIATXNICETMXNIXFLQYADDFVLYTSCSNINEGQAA
FT                 LQXXVNKFYNCVSEIGMKISTSKSKIIVFKKGINRFPVKIYVNEKLLEVVE
FT                 NVKYLGCWLDRXLRWAKQVNELQGKILKFLNIFKVLAGSGWGVHPKHLRRX
FT                 YLSSIRSRLDYASFLIDDSSEAHLKKXDLVQNKALRIIGGYVRSTPTHVME
FT                 SDLGIQPLQFRRFYLGGKFWLRSKSFKLCNTIQILETSIASDVLNKWKRKR
FT                 KPLLLNIHKRFRYLEVNQSNKINFFSFDTWINNLAVENVIKINIDNFNKPK
FT                 RTYNIDYLGDHCQRFISNDYSDFYKIYTDGSKEGNLSGAAFYDDQNSEFIK
FT                 FQINKNISIMHTELIAICEALSYISSVNHTKFVIFSDSKSSLQHIARCTSN
FT                 PKGIPVAFNILKLIHEYDQQNKLVVLQWIPSHVHILGNEIADTLAKEGITD
FT                 GVPMTIEPVSSDCVYLIRNLCYSFWKEYFDQRSLTKGIWYRTIQAEPSIKS
FT                 WIDSVCLNRKDCVTCLRLRSGHIPSNKFAFLMKKIDSPNCCTCNTIDDVYH
FT                 VTMECVQNEPLRRRLICRDFYNDIGACNSALAVPDSVLGKKILYIVQNKNN
FT                 "
XX
SQ   Sequence 2657 BP; 916 A; 368 C; 472 G; 877 T; 24 other;
     cagaattatg aaattctwaa agaaaaaatt caaagtttcc aaaaactcct taggagggca        60
     cagatagaat cgtggaatag gttttgtaca tctataggmg aatcaacttc acctttggat       120
     atgtggaacc aaatgagatg gattaaaggt tataaamtgc aaawaactaa tattgatgat       180
     acaatggcta caaatttatt aagtagttta kgtccagatt ctgtatgcsg aaawagtcca       240
     ttgtttaact catctaatcc acaattggag tctaggatca cggagaacga attaaggtcc       300
     tgtattaaat ctaaagatac agctccaggt catgatgata tttcgtattc twtggttaat       360
     tacttatcat ctaatgctct gacggttttg gtaagtattt acaataggat tctgataaat       420
     agctktattc cgaaacagtg gcggtatata tcagttatac caattccaaa gcctggtcgc       480
     gatatatcaa atgctggagc tctacgtccg atatcattaa tatcctgttt atgcaaaawt       540
     tttcattccg tacttcaaaa aagattggaa tggtatatag aaaatttgga tatttattct       600
     ttggtgaaaa cgcttgatga tataggtatt ggttccataa tgtgtaamta tatatggaag       660
     attctgtctg agagatatct tcaaattaat gttaataata atatttmtcg taagacttgc       720
     cagggtttag cacagggaga tcctttgtct cccttattat ttaatattgc tacttmtaat       780
     atatgtgaaa ccatgasmaa tattawtttt ttacaatatg ctgatgattt tgttttatat       840
     acatcatgtt ctaatataaa tgaagggcaa gccgctctac agmtgsctgt taataaattt       900
     tataattgtg tcagtgagat aggtatgaaa atttcaacat ctaaaagcaa aattattgta       960
     tttaaaaagg gcattaatag atttcctgtt aaaatatatg tcaatgaaaa actgttagaa      1020
     gtagtagaaa acgttaaata tttgggttgt tggctggata gatstttgag atgggctaaa      1080
     caagtcaatg aattgcaggg aaaaatttta aaatttctta atatctttaa agtgctagct      1140
     gggtctgggt ggggagttca tcccaaacac cttaggcgtw tttatttatc ttctattcga      1200
     agtcgtttag attatgcaag ttttttaata gatgacagta gtgaagcaca tttaaaaaaa      1260
     wtggacttag tgcaaaataa agckttaaga attattggmg gctatgttag aagtackcca      1320
     actcatgtta tggaatctga tctgggtata cagcctcttc aatttagaag attctatcta      1380
     ggcggtaagt tttggttgag atctaagtca tttaaattgt gtaatactat tcagatttta      1440
     gaaacttcta ttgcaagtga tgtgttaaat aaatggaaaa gaaaacgtaa accattatta      1500
     ttaaatattc ataagcgatt tagatatctt gaagtaaatc agagtaacaa aattaatttc      1560
     ttttcttttg atacttggat aaacaactta gcggtagaaa atgtaattaa aataaatatt      1620
     gacaacttca ataaacctaa aaggacttac aatattgatt acttgggtga tcactgccaa      1680
     cggtttataa gcaatgatta tagtgacttc tataagattt atacagatgg gtctaaagaa      1740
     ggcaatttat caggggcagc tttttatgat gatcaaaatt cggaatttat taaatttcaa      1800
     atcaataaaa atatttccat catgcataca gaactaatcg ccatttgtga agcactatcg      1860
     tatatttcgt cagtaaatca taccaaattt gtcatatttt ctgactccaa gagttctctt      1920
     caacacattg ctcgatgtac ctctaatcct aaaggtattc ccgtagcatt taatatttta      1980
     aaattaattc atgagtatga tcagcagaat aaattagtag tcttacaatg gatcccttca      2040
     cacgttcata ttttaggtaa tgaaattgct gatacactag ccaaggaggg aattacggat      2100
     ggtgttccaa tgactatcga accggtatct tctgattgtg tttatttaat taggaatttg      2160
     tgttactcgt tttggaagga atatttcgac caacgatctc taactaaggg tatttggtac      2220
     agaactattc aagcagaacc ttcaataaaa tcgtggattg actctgtttg cctaaataga      2280
     aaagattgtg tgacgtgttt aagacttagg tcgggacaca ttccatcaaa caaattcgca      2340
     tttctaatga aaaaaattga ttctcctaat tgttgtacat gcaacaccat agatgacgta      2400
     tatcatgtta cgatggaatg tgtccagaat gagcctctga gacgtcggtt aatttgcaga      2460
     gatttctaca atgatatagg agcatgtaat agtgctttag cagtgccaga ctctgtgtta      2520
     ggaaaaaaaa tattgtatat agttcagaat aaaaataatt gattgtaact aacattaatt      2580
     agaatgttaa ccaaacaggg cggcatggtc gttgtcacga caaagctctt aaataaaaag      2640
     aaaaaaaaaa aaaaaaa                                                     2657
//
ID   I-1_LHu     repbase;    DNA;    INV; 5864 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Linepithema humile genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-5864
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 478-478 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..2000
FT                 /product="I-1_LHu_1p"
FT                 /translation="MPRSRSRSRLKGNKGXSKIHDGVSNPKKTTSIISDSS
FT                 DSDIDMNTNNELTSKESTNMYLDITNDPKRISDIIGANSSNLNPTHDHATI
FT                 SSVPSTSGIKRSANDEPYSDTEIKKSIKVTTSNNNAKDSSSQKSETINAID
FT                 NLIKNRYAHTNQGPFYVYIQSSSSPPSPIHPLYIGRTLTKWGKNEFTEVKK
FT                 LGFSKISVKLKTKEAANLLVSQQPFKDRNMTCFIPNYRIFRQGIIRNIPTD
FT                 IDLEDLKTGIDCPTEITALRRLNRRVSIEDESGGKSTQFVPARTIVISFLN
FT                 QILPKYIYIFGVRYEVTPFIPKTTICYSCYRFGHSATQCRGKPRCSHCGRS
FT                 DHDNSTPCPNIASPPFCANCRGEHSPMDPLCPEFAIQKNVQLLAADRNIPL
FT                 KEARDLLSGKNQNFNLRNDIFNFPPLGGSPSPDSPPSFSHFSSPIFRSSPY
FT                 TNDSPVSYNGISYAQATDSSNSYNKTNKSPFSNIRGVPTPKAPNRPNQDSR
FT                 GSGHDYLLEPNGRSLFRPPDGCAIPSERPNINHPPSPPSGSQESQLNFILQ
FT                 LFTQLIAAVSNINPSLYNILINRSSLSYPSREKELPFNPYNNSHNG"
FT   CDS           1996..5475
FT                 /product="I-1_LHu_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MDKSSYNNIKIFQWNARGLISKKGELLKIINNYDVIA
FT                 ISESWLNPNFHFYIPGFTIYRRDSLRNKSSGLCLMIRNDIQSIIENEIIHY
FT                 EGTLDTLGASFSTAHGQLLIVSLYKHPEVRIGYDQWNSLFSSFTNFKNIIV
FT                 LGDFNAHNLSWGCATTSSTGRSLEEAASDNNLAILNNGSATRLTSPLQNKS
FT                 AVDLTFVNPDLIPVCSWQVLNDSMNSDHFPIVTTINAIILYSKRFYHKIDN
FT                 NATDWKIFKGHFALREDEISTRLQREDFDVSEQIHYLSTQFLEAVSSANGK
FT                 PLHSNSQTTYRSIKGPPPAPWWNLDCKLAAIERKTALKNFKKIPSLSNYIL
FT                 LKNKEALAKKVFRKAKSESWRKFCNEIEFKTAPGKIWKIIKCFKNRNLSEV
FT                 NYHPNSNKKNEELKGIIHSLCPDSCASPTPFENVDFSSGECILSRPISVSE
FT                 VSDVIARVNLHSSPGIDGISYRMISHLPSFMHEHICKLFNQILSSGSFPQD
FT                 WRKTLVFLIPKATPGKYRPISLTSCLLKVMEKIIASRLQWWCEHNKIITKS
FT                 QFGFRKGKSCYDNLALLSTEISTGLALAQYTPCLFLDIKGAFDNLLPNILI
FT                 HILRELKIPERLCKFIYNLTSFRTLFFNLNGELSQPYHTYKGVPQGSVLSP
FT                 LLFNLYINNLHKHISNNCRLLQFADDTAIYIRGNNIEENLLNLSTSASKVV
FT                 SYLEEIGLEISPSKSSLVIFTRKRIDPFSCCIDVNGSLIXSTDRAKFLGIL
FT                 LDYRFTGHLHVNYLYSKGIKLLNILKMLRGVWWGSHPSALLNIYKMVIRAS
FT                 LEYGNFVFSGVPYNLFQKLERIQFQALRLALGYRITTPTNIILAEACILPL
FT                 YTRFLLLTRRYLIRAFSLKKHPLITKLENLSDITSIHTRHNISNSFLLLKA
FT                 FYHCRTFKNRIKSEPLAIAHSISFDALLWTPNIRITDRSNFVENSDSNQIF
FT                 RLIYNDIISGKHVFYTDGSKKSDGLYVGLAVYAPSLEHSPFYRITSYASIF
FT                 TAESMAIDIAIDLIVSNQLKSSVIFTDSQSIVRSVANCSPLHCKNDLAVYL
FT                 KNKLYSAHAIGLHIELIWIPAHIGIDGNEMADRLANLAIRYGNNLNAPIPY
FT                 SDFFHHFKEKAYSRFFAFLDRWKNIKGVITLNIITTETKNPGSILFNLQIG
FT                 N"
XX
SQ   Sequence 5864 BP; 1767 A; 1374 C; 915 G; 1800 T; 8 other;
     ctggcgctgc atgcgaacgt gaacacacgc aattatgtag tgctcgaaag ttaattgtgc        60
     aataatatac ktattaagct wtcagagtgt ttwcwgtgtc ttgcagkctt ctagcatttt       120
     tagctcctga aaggccaggc tcaggctcta ttgcagggaa acctgccgct tttcggtgag       180
     aaggggggct aacctccctg atcccttcgc acgtggccga catgcctcgt tctcgatccc       240
     gttcccgcct taaaggtaac aaaggaaawt ctaaaataca cgatggggta agcaatccta       300
     agaaaactac ctctatcatt agtgattcta gtgattccga catcgacatg aatactaata       360
     atgaattaac ctctaaggaa agtactaata tgtaccttga catcaccaac gatccaaaac       420
     gtatttccga tataatcggg gctaattctt ccaacttaaa tccaacacat gatcacgcca       480
     ctatttcttc tgtcccatct acgtctggga tcaaaagatc tgccaatgat gaaccttatt       540
     cggatactga gatcaaaaaa tccattaaag ttaccacatc caataataac gccaaagact       600
     cttctagtca aaaaagtgag acaatcaatg ctatcgataa tctaataaaa aatagatatg       660
     cacatactaa ccaaggtcca ttttatgtgt atattcaatc ctcttcttct cctccctcac       720
     ctattcatcc tctctacata ggacgcaccc ttactaaatg gggtaagaat gaatttacag       780
     aggtaaagaa gttgggtttt tccaaaatct ccgtcaaact aaagaccaaa gaagcggcta       840
     atctattagt ttcacaacag cccttcaaag atcgcaatat gacatgcttt atcccaaatt       900
     acagaatctt tcgtcaggga ataatccgaa atatccctac ggacattgat ttagaggatc       960
     tcaaaacggg aattgactgc ccaactgaga tcactgcctt gaggagactc aacagaagag      1020
     tctctatcga agacgagtct ggtggtaaat ccacccaatt tgtacctgct aggactattg      1080
     taatatcctt tttaaaccaa atccttccca aatatatcta tatatttggt gtaagatacg      1140
     aggtcactcc ttttatacca aaaactacaa tctgttattc ttgttacaga tttggccact      1200
     cagccactca gtgtcgaggc aaacctcgtt gctctcattg cggacgatca gatcatgaca      1260
     actcaactcc ttgccctaac attgcgtccc caccattttg cgccaactgc agaggagagc      1320
     actctcctat ggaccccctc tgtcctgaat ttgccatcca gaaaaatgtt cagctacttg      1380
     cagcggatag gaacatccct cttaaggagg ctagagacct actctcaggt aaaaatcaga      1440
     attttaactt gaggaacgac attttcaatt tcccccctct tggtgggagt ccttcccccg      1500
     actcaccacc tagcttttct cacttctctt cacctatctt cagatcttct ccttatacta      1560
     atgactcacc agtcagttat aatggtattt cttatgcgca ggcgacggat agctctaact      1620
     cttataataa aaccaacaag agtccgttct ctaacataag gggagttcct acccctaagg      1680
     cccctaatcg tcctaatcag gacagccgag gttctgggca tgactatttg ctcgagccaa      1740
     atggtcgatc tctttttaga cctccagacg ggtgtgctat cccttctgaa cgacccaata      1800
     tcaatcaccc cccctctcct ccttctggct cccaagagag tcagctaaat tttattctgc      1860
     agctatttac tcagttaata gctgcggttt ctaatataaa cccatcttta tataatattc      1920
     tcattaacag atcctctttg tcttatcctt cccgggaaaa ggaacttcct ttcaatccct      1980
     acaataattc tcataatgga taaatcttca tacaataata taaaaatttt ccaatggaat      2040
     gctagaggac taatttctaa aaagggagaa ctccttaaga ttatcaataa ttatgatgtt      2100
     attgccatct ctgaatcgtg gttaaatcca aacttccact tttatattcc aggttttaca      2160
     atttacagaa gagactctct tcgcaataaa tctagtgggc tatgtctcat gatccgcaac      2220
     gacatccaat ctattatcga aaatgaaatt atacattatg aaggaacctt agacactctt      2280
     ggagcttctt tttcaaccgc acacggtcag ttactcatag tctctcttta taagcatcca      2340
     gaagttcgta taggatatga tcaatggaac tcgcttttct cctcatttac gaactttaaa      2400
     aatataatag tactgggcga ctttaatgct cataacctct cttggggttg tgctactacc      2460
     tcctccacag gtagatcgct tgaagaagca gcatcggata ataatctagc aattcttaat      2520
     aatggttcgg caaccagatt aacatctcca cttcaaaaca aaagcgctgt tgaccttaca      2580
     tttgtcaatc ctgatctcat ccctgtttgc tcttggcaag ttttaaatga ctccatgaat      2640
     agcgatcact ttcctattgt tactaccatc aatgctataa ttctctactc taaaagattt      2700
     tatcacaaaa tcgataataa tgccaccgac tggaaaattt ttaaaggaca ctttgctctc      2760
     cgagaagacg aaatttcaac tagacttcaa cgtgaagact ttgatgtctc tgagcaaatt      2820
     cactatcttt caactcaatt tctcgaggca gttagttcag ccaatggtaa acctcttcat      2880
     tccaactctc aaacaaccta tcgctcaata aaaggccccc caccagctcc ctggtggaac      2940
     cttgattgta agttagctgc tattgaaagg aagacagcct taaaaaattt caaaaaaatt      3000
     ccatccttat ctaattacat tcttctcaaa aataaagaag ctttagctaa aaaagtattc      3060
     cgtaaagcta aaagcgaatc ttggagaaaa ttctgtaacg aaattgaatt caaaacagct      3120
     cctgggaaga tctggaaaat tattaaatgc ttcaaaaatc gtaatctttc cgaggtaaac      3180
     taccatccaa attccaataa aaaaaacgaa gaactcaagg gtattatcca ttccctttgt      3240
     cccgactcct gtgcttctcc tactcctttt gaaaatgtag acttttcttc aggggagtgt      3300
     atactctctc gaccaatttc agtgtctgag gtttcggatg taatagccag agttaactta      3360
     cactcgtccc cgggtattga tggtattagt tatcgcatga tttcccatct tcctagtttc      3420
     atgcatgaac acatctgcaa gttattcaac caaattcttt cttcaggatc tttccctcag      3480
     gattggagga aaaccttggt tttcctaatc cccaaagcta caccgggtaa atatcgtccg      3540
     atatcgttaa cctcttgtct tcttaaagtc atggaaaaaa tcattgcctc aagacttcaa      3600
     tggtggtgtg agcacaataa aataattact aaatctcaat ttggatttcg taaaggcaag      3660
     tcatgctatg acaacttagc tcttctttca acagaaatct ctactggcct cgctctagca      3720
     cagtacactc catgcctttt cctcgatatc aaaggagcgt ttgataacct tcttcccaac      3780
     atcctaattc atatcttaag ggaactaaaa attcctgaaa ggctctgcaa attcatctat      3840
     aatcttacct cctttcgtac tctctttttc aatctgaatg gagaactatc tcaaccatat      3900
     catacatata agggcgtgcc tcagggctca gtgttaagcc ctcttctctt caatctatac      3960
     attaataact tacataaaca tatatctaat aactgtcgcc ttcttcaatt cgcagatgac      4020
     acggctatct atataagagg aaataatatt gaggaaaatc tcctcaacct atctacatcc      4080
     gcatctaaag tggtaagtta ccttgaggaa attgggttgg aaatctcccc ttccaagtca      4140
     tccttggtta tttttaccag gaaaaggata gatcccttct cctgctgtat tgatgtcaat      4200
     ggaagtctta ttgantcaac tgatagagcc aaattcttgg gcattctctt ggattataga      4260
     tttacaggac acttacacgt taactatctt tactctaaag gtatcaagct gcttaatatc      4320
     cttaaaatgc taagaggtgt atggtgggga tcccatccct ctgctctgct aaatatctac      4380
     aaaatggtca tacgtgcttc cttggaatac ggtaattttg tcttttccgg tgttccttat      4440
     aatctatttc aaaaacttga acgcatacag ttccaggccc twagactcgc acttggctac      4500
     aggataacca ctcctactaa tatcattctt gctgaggcct gtatattacc tctgtacact      4560
     agattcttgc ttcttactcg aagataccta ataagggcct tctcgctgaa gaaacatccg      4620
     ttgattacca aattggaaaa cctttctgac ataacttcta ttcacaccag acataacatt      4680
     tctaattctt ttcttctact taaggccttc tatcactgtc gtacttttaa aaatcgtatt      4740
     aaatctgaac ccctggctat tgctcactca atatcctttg atgctctact ttggacacct      4800
     aacatcagaa ttacagacag atccaacttt gttgagaact ctgactctaa tcagatcttt      4860
     agattaattt ataatgatat tatcagtgga aaacatgtct tttataccga tggatccaaa      4920
     aaatccgacg gtctttatgt ggggttggct gtttatgccc cctctctaga acattcaccc      4980
     ttctatagaa ttacatctta tgcttccatt ttcactgcgg aaagtatggc aatagatatt      5040
     gcaattgacc tcatagtttc taaccaactt aaaagctcag ttattttcac tgactcgcaa      5100
     agcatagtcc gttctgttgc aaattgctcg cctttacatt gcaaaaatga tctagcagtt      5160
     tatcttaaaa ataaacttta ctccgcacat gcaattgggc tgcatattga gcttatttgg      5220
     atccccgctc atatagggat agacggtaat gaaatggctg accgtcttgc aaatttagcc      5280
     ataagatatg gtaataactt aaatgcaccc attccttatt ctgatttttt tcatcatttc      5340
     aaagaaaaag catattcaag attttttgcc tttttggatc gttggaaaaa cataaaaggt      5400
     gtcattactt taaacattat tacaacagaa acaaaaaacc ctggttccat ccttttcaat      5460
     cttcagatcg gaaattgatc tcttccttaa ctcgcataag aagtaaccat tacaatttaa      5520
     atgcttctct tgccagatgc aatattatcg actctccgaa gtgtcaatgt ggctatcaat      5580
     ctgaaaacat tgaacatgtt ttatggaatt gcccacttta taacagtgct agagctgctt      5640
     ttcgttcgga attactaaaa actggaatca acccccctta ttcaactact attttactaa      5700
     aaaatccaac tcccgaaacc ttacacgctt ttgaagtttt tctaagaatg tctaacctct      5760
     ctttttaaat ctcccgcttc ctttatcacc cccccttctg ccgaaccaga tggccgcaag      5820
     agggaagaac cttcggagcc acgacatatt aaactaaact aaca                       5864
//
ID   I-1_LMi     repbase;    DNA;    INV; 5637 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 19.11, Created)
DT   21-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5637
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3134-3134 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           777..1745
FT                 /product="I-1_LMi_1p"
FT                 /translation="MEAANRFVNDNPLKPKQMVAYIPNHRTHRQGVIRNVD
FT                 LELTELELKEAIQSTIPVSQVRRMTKKILNQGVERNIPRQTCVITFASQYL
FT                 PEFVTIYGMRCSVRPYIPLVRQCFRCLRYGHLSNQCQSQSRCNKCGGNHED
FT                 TQCTSQTICCVHCKGNHTARDKSCPMYLKQKEIKSASATHNISFKEAEEYV
FT                 NRRSYAAVAGKFSESKVNWEKDFPLPKSSQHRFTKTVYHSRPTTIKNAPLP
FT                 NHLLANINLPISPIKENPYAPRPQTPEPQQSLPAGGVDKKKILIEELVTAF
FT                 TNLITQLTSSNKNNLDQTDIYNMIDHIVSKQ"
FT   CDS           join(1745..3547,3635..4918)
FT                 /product="I-1_LMi_2p"
FT                 /translation="MNIQQDRHSSKVTITLPYKIMDIKILQWNARSLYANR
FT                 ESFMHELYSKEYGIAVVSETWFKPNMTFKCRGYHVIRSDREDGKGGVAIFI
FT                 NTKLAYKQIAIPLPNLDFQAIAAEIYTNNYRFSIASVYRPPKCRNLEHHMN
FT                 TLLENITKPFLICGDFNAHHTAWGCQVNDKEGEYIMSCIDDHNIIIYNDGS
FT                 PTLNQGPWMRPSAVDLTLASPCMTQIVTWSVIQDTMGSNHFPITMNIQRGK
FT                 NKQMYFSNNSSWNMNKADWIKYRQILESAVNSIEINHHPHRVYTQLRNSIY
FT                 HAADEAIPKRTVITKARRLGNPWWNEECDRAVQDRRKALNDYIKQPNMDSF
FT                 LKYKQAAAKTKKLLKSAKKNSWINYCNSLSKNTDLSEIWHKVNRFRNVAPA
FT                 PNHIQTFDWVEEFCDLIAPPSVRNKPHRKRNWTSGEQHILNTPFNIEELIS
FT                 VIKESTNTAPGMDQITYPMIQNMPRNALDLLLRIYNEIWMHYELVQEWKTQ
FT                 IIVPIHKKGKDPWVATSYRPIVLSSCIAKTMEKLIKRRLEWWLESSSLLSG
FT                 SQFGFRRGRNCMDNLSILIYSVLSGFGENKYTAALFSDITKAYDSVRSAYY
FT                 WINTRGPPVSGQWSTTRISTQPTALCNLYFDIEKTLTQAVNIIQFADDICV
FT                 FTSHEILQEAINNLTSSIKNLNQWLCGNGLTIAPEKSSIVIFTRKAKVPRD
FT                 CLIHVDDKRIPVKASVRFLGMTLDSKLSWVAHINTVIGKSEQILNIIRSLT
FT                 RTWWGAHPSVMLLLYRALIRSRLDYGSMFYNYATNKQLEKLDRFQYRCIRA
FT                 CLGAMKSTPTNALLVEAREMPLHIRRKMLMERFIVEKLSCSQHPIHEILRL
FT                 FHSSTGNWGKKLYDIVTTYNDVANISRDILSNTQWPIYKYDYFVLRDHIPF
FT                 QIIEGKTQFLETISAMQRQLQVSGNKIIHIYTDGSKSADGNGTGCAIYSPQ
FT                 LQMEQKFKLPENASIYLAETYAVLKAIQYTINQNYSHFVILSDCKSVLQAM
FT                 SNIKLSKSTNEYLLQIRLWYHES"
XX
SQ   Sequence 5637 BP; 2086 A; 1101 C; 1096 G; 1352 T; 2 other;
     gtgatctttg acttgtgtat cgtgaaaata ttagttagta gagctcgagt ttttttgtca        60
     gtaaataaag gaaaaagccg tagatcaatc tataagtggt aggaatcaaa tatttaaggc       120
     aggaccaaaa ctttatataa ccgaaagagc ctgggacaca acaaatatgg atagcggmcc       180
     gttcggggag ggaggaggcc tctcacccga ttcggatctg tatgcccgtg aactactaag       240
     tgcagaagtt ctattgaaca tgggaatgga gattgatcca gcgacgaatt ctacagtaaa       300
     acgtgcactg gaagagactg aaggagtcca ggaaaagcga cgagcaatta actcccagca       360
     acatcaacaa agaattgtaa acgaggtaat gagttcgaca gcagatgact caggtaggtg       420
     tgacaagtat gttacaattg aaaggacaaa actcmctcac cacttggaaa atccaaagac       480
     accaactgct ggtaattcaa atatcaacca acatttacaa gatacctgta atacacagtg       540
     ggacagtgct tcagtagcaa atgtgaagtc aatatatgaa caaaacaaag gaaataggta       600
     ccaaagtgac gctgtcggcc cattctatgt attcgttgag ggtctcaccg gtaatgtggg       660
     caaatatcat ccaatggcat tgggaaaggc actttttact acagactgcg gcacaaacat       720
     gaaatactga atctcaaagt ggtgggaaaa acagaattaa aattgacttt tcaactatgg       780
     aagctgcaaa taggtttgtg aacgacaacc cactaaaacc aaagcaaatg gtagcataca       840
     tacctaatca ccgaacacac cgtcagggag tcattagaaa tgttgatcta gaattgacag       900
     agctagaact gaaagaagct attcagtcta caataccggt aagccaagtt cgaagaatga       960
     caaagaaaat actcaaccaa ggtgtagaga gaaatatacc gcgacaaaca tgtgtaatca      1020
     catttgcatc acaatactta ccagaatttg tgacaattta tggtatgaga tgtagtgtta      1080
     ggccatacat acctcttgtg agacagtgtt ttcgatgtct cagatatggt catcttagca      1140
     accaatgtca atcacagtct agatgcaata aatgtggagg gaatcatgag gacacacagt      1200
     gcacaagcca aacaatatgc tgtgtacact gcaaggggaa ccatacagct agagataaat      1260
     cttgccctat gtacctcaaa caaaaggaga taaaatcagc atcagcaaca cacaatatat      1320
     catttaagga agctgaggaa tacgtgaaca gaaggtccta tgcagcagtg gcgggaaagt      1380
     ttagtgaaag taaagtgaat tgggagaaag attttccact cccaaaaagc tctcaacata      1440
     gatttactaa aacagtatat catagtagac ctacaacaat aaagaatgca cctcttccta      1500
     atcatctcct tgctaacata aatttaccca tatctcccat taaggagaac ccgtacgcac      1560
     cacgaccaca gacacctgag cctcaacagt cacttccagc aggaggagta gacaagaaga      1620
     aaatattaat tgaggagttg gtgactgctt ttacaaacct aataacacag cttacctcat      1680
     caaacaagaa caatttggac cagacagata tatacaatat gattgaccat atagtatcca      1740
     aacaatgaat atacagcaag acagacacag ctcaaaagta accattactc tcccttacaa      1800
     aataatggac ataaaaattc ttcagtggaa tgcaagatca ttatatgcca atagagagtc      1860
     attcatgcat gaactttatt ccaaagaata cggtatagct gtagtcagtg agacttggtt      1920
     taaaccaaat atgacattta aatgccgagg ataccatgta ataagatcag atagggagga      1980
     tggcaaaggt ggtgtagcca tattcattaa tacaaaactt gcctacaagc aaattgcaat      2040
     cccactaccc aacctggatt ttcaagcaat agcagcagaa atatatacta acaattacag      2100
     attttcaatt gcatccgtat accgaccgcc aaaatgtcga aatttagaac accacatgaa      2160
     tacattacta gaaaacataa caaaaccatt cctaatctgt ggtgatttca acgcacacca      2220
     cacagcatgg ggatgtcagg tgaacgataa ggaaggagag tacataatgt catgtataga      2280
     tgaccacaat atcataattt acaacgatgg atccccaaca ttaaaccaag gaccttggat      2340
     gaggccatct gcagtggatc taacattagc ctccccatgt atgacccaaa ttgtgacatg      2400
     gtctgttata caagatacca tgggatcaaa tcatttccct ataactatga acatacaacg      2460
     tggaaaaaat aaacaaatgt atttctctaa taattcaagc tggaacatga acaaagcgga      2520
     ctggattaaa tatagacaaa ttttggaatc agcggtaaac tcaatagaaa tcaaccatca      2580
     tccacacaga gtttatacac agcttcgaaa tagtatatat catgcggcag atgaagctat      2640
     cccaaaaaga acagtaataa caaaagcaag aagattgggc aacccatggt ggaatgaaga      2700
     atgtgataga gcagtacaag acagaagaaa agccctaaat gattatatca aacaacctaa      2760
     catggacagc tttttgaagt ataaacaagc agcagccaaa acaaagaaac tattaaaatc      2820
     agctaaaaag aacagctgga taaattattg taacagccta agtaagaaca ccgacttgtc      2880
     agagatatgg cacaaagtta acaggttcag gaatgtagcg cctgcaccca accatataca      2940
     gacatttgat tgggtagaag aattctgcga ccttatcgct ccaccaagtg tacgcaacaa      3000
     gccacatagg aagagaaatt ggacttcagg agaacagcat atactcaata ctccgttcaa      3060
     tatcgaggag cttatatctg tcatcaaaga aagcacaaat acagctccag gaatggacca      3120
     gattacatat cctatgatac aaaatatgcc tagaaatgct ctagacctac tcctccgaat      3180
     ttataacgaa atctggatgc attacgaatt ggtccaagaa tggaagacac agatcatagt      3240
     tcctatacac aaaaaaggga aagacccatg ggtagccaca tcttacagac cgatcgtact      3300
     gtcatcttgt attgctaaaa cgatggaaaa actgataaaa aggcgattgg agtggtggtt      3360
     agaatcctca tccttactat ctggttccca atttggattt cgcagaggta gaaattgcat      3420
     ggacaactta tctatattga tctactcagt tctatctggc tttggtgaga ataaatatac      3480
     agcagccctg ttttctgaca taacaaaagc ctatgatagt gtcagatcag catattattg      3540
     gataaattga tacaattagg agcaccacct cagtttgtgg aagcaatgtc gacattaata      3600
     agtgaaagaa ttgtgtatat tagagtgaat atgaactcga gggcccccgg ttagtggaca      3660
     atggagtacc acaaggatca gtactcagcc cactgcttta tgcaatttat acttcgacat      3720
     agaaaaaaca ttaactcaag cagttaatat tattcagttt gcagacgaca tatgtgtgtt      3780
     cacctcccac gaaatattac aagaggcgat aaataatctt acttcatcta taaaaaactt      3840
     aaatcagtgg ctctgtggaa atggactcac gattgcacca gagaaatctt caatagttat      3900
     attcactaga aaggctaaag taccaaggga ttgtttaata catgtggatg acaaaagaat      3960
     accagtaaag gcgagtgttc gatttctagg aatgactttg gacagtaaac tctcttgggt      4020
     agcacatatt aatacagtaa ttggaaaaag tgaacaaata ctgaacatca ttagatccct      4080
     caccaggaca tggtgggggg cacatccctc agtgatgctg ctcttgtatc gcgccctcat      4140
     ccgatccaga ctagactatg gcagcatgtt ctacaactat gcaacaaaca agcagttaga      4200
     gaagctagac agattccagt accgatgtat tcgcgcttgc ctaggtgcaa tgaaatccac      4260
     tccaacaaat gcactactgg tggaagctcg tgagatgccc cttcatataa ggaggaagat      4320
     gctcatggag cgattcattg tagagaagct gtcatgttca caacacccaa tacatgaaat      4380
     actacgtctg ttccattcat ccactggaaa ttggggcaaa aagctgtatg atatagttac      4440
     gacctacaat gacgttgcaa acatcagcag agatatttta tcgaacacac agtggcctat      4500
     atataaatac gactatttcg tgctcaggga ccacatcccg ttccaaataa tagagggaaa      4560
     gactcagttt ttggagacga tctcagccat gcaaagacaa ctgcaggtat caggaaacaa      4620
     gataattcac atatacacag atggatcaaa gtcagctgac ggaaatggca ctggatgtgc      4680
     catttacagt ccacaactac aaatggagca aaaatttaaa ttaccagaga atgcttcgat      4740
     ttacttggct gagacatatg cagttctaaa ggcgatacag tacactataa atcagaatta      4800
     ctcacacttt gtaatattat cggactgtaa gagtgtacta caagcaatgt ctaatataaa      4860
     actctcgaaa tccacgaatg aatacctgct acaaatccgc ctatggtatc atgaaagttg      4920
     agaagacaga aaaagatcat attcatgtgg gtgaaggcac attgtggcat accaggaacg      4980
     agaaagcgga cagctggcaa agcaggcaac aagtaatggg acaaaactag agctaaaact      5040
     tccttacacc gaatatggca tattattcgc aaaagggcat ttgactcttg gcaagaagaa      5100
     tggacacata gctcacgcta caaaggacgc aactatgctc atatacaaga tagaatacct      5160
     aaaagaccat ggtttgatat agtcaatgga ccccgacaag caacgagtac attaagtaga      5220
     ataagattta accatggctc attccctgaa cacttatacc gattgaatat aaatcaaaca      5280
     ccggcttgtg attgtgatgg catctcgcga ggagatacga accatttatt ttttcaatgc      5340
     ccaaaatatc aagaagcgag gaaaggtttt tatcatctat catcaaaaat aaagtgccac      5400
     aaccaatgac aatcaaatcc ttactatacg aatccaacac gaaagtctac gaagccataa      5460
     tcgagtttat atgtaacgga aagattaaaa tataatggtc attactaaag taatttgggc      5520
     attaaaggac tatataaaat aaaggaagga aataatagta ttatatggca ttgattctaa      5580
     caaagaaatg actgaatggt ttgaaaccga agtcaaagaa acaaagaaac aacaaca         5637
//
ID   I-1_NVi     repbase;    DNA;    INV; 5957 BP.
XX
AC   AAZX01003261.1;
XX
DT   30-JUN-2009 (Rel. 14.07, Created)
DT   30-JUN-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   I-1_NVi is a non-LTR retrotransposon from the I clade.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; endonuclease; RNaseH; I clade; I-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5957
RA   Bao W. and Jurka J.;
RT   "I-type non-LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1394-1394 (2009).
XX
DR   EMBL/GenBank/DDBJ; AAZX01003261.1; Positions   14204    8248.
XX
FH   Key           Location/Qualifiers
FT   CDS           273..1877
FT                 /product="I-1_NVi_1p"
FT                 /translation="MTDESDGEDHIMQTSPIKTFPEERTKKVDDLRKRKTT
FT                 EQSQYKPEERNSTKRAHITQQDNNKDKTSQETNAQQHGNDQTDVLLYTEDI
FT                 PPPYKIIIVPTTETKTSENTSESSTKSIRLEPIHIAKTIIPILPNNSIDEI
FT                 KKSGKNRVTVITHNRKVANKILTLEILKEKKLTPFIPSSYIYRRGVIKHVP
FT                 TDITENEIKNNIKLTSPVANLTIQSVKRFYRYNKSESGTTSTPTTTIMITF
FT                 KGQVMPQYADLYRIKHSVEAYIPTVKLCANCYRHGHTKAFCKSKTRCIYCG
FT                 ETDHDSTLCTMKNETLKCINCTENHLPTDRNCKIRIREQQIITMATKRNIS
FT                 VQEAKQNYNELILNKKRIRFSEFPELSIATTPDELDYASQIYNTPRRRLFT
FT                 DTLKTSRPVNSRPLTNNSPKKLHNNVINKENNQLTYQHKNILISPNGDYKL
FT                 NYTATKQNQGNSPNNNNYLTTTPNLSTLASPLLTLNEKGFLLDKKISLTQN
FT                 DIVNYLNNDPNFYENILNILQENSYQNSQNTYIENNSL*"
FT   CDS           join(1890..3185,3062..3598,3647..3985,3915..4379,
FT                 4383..4928,4870..5808)
FT                 /product="I-1_NVi_2p"
FT                 /translation="VNIDLKEIKILQWNCHSLKSKLPIFRNSIEEYDIIAL
FT                 QETWLDELSNPKIPNYSIIRKDRKNSYPSGGVAIIIRNNIPFKIIENIYYS
FT                 EKTMETIAISIPLIQHNNDTNEENSLLIASVYRNPAKQTSINEWNSLFNSI
FT                 KNYKNIYIGGDFNAHHFSWGSSKICNSGEFLVESLLDNNLHILNDGTHTYY
FT                 TSKTITLPNNSVVQKIISSPLDLTLISTNLLHKTTWKIQEDNMYSDHYPIL
FT                 CTISLEIETIPFNSTHKISHKNVNWKLFSTLLKNYFEKNHQTIENMTIDEQ
FT                 YNFLINLCTTSIIQLNTKNNSKKTYENQALFSGDIFNTSPTELISQYHPSL
FT                 VKTFNKRPIKAPWWNQVCTELARERRLASFKLLKNPTQENLDDLKQIEKST
FT                 RKKLNKIKKIVLGNMLMKSLRLIQTPKLYGTSYKAIKTKIYKKKIKQNKKD
FT                 SFREHVNEIFTLDTDSKTIWNFIQSYKNITNIKPEYAPNDIEILENINQFI
FT                 EEFTSPAQSNNTDDDQYSIEPNNNNPYQELDAPFSPIELNLAIKEVKKQSS
FT                 PGLDKVDYEMIKNTPDCFKELLLKLIHFYYTNCNSPISWNKFLIILLPKDS
FT                 KKNSDPSHWPHVYKKNDLIPDTQNGFRKAKSCHHALAYILTDIHLATHKNL
FT                 YTLCVLIDIKSAFDNVCPKILDKILKDLGIPYKTRSFIYKLISNKQLFFKI
FT                 GNKLQGPYKKKWSSSRKCIESHFIETNYKDHIKKNGVPQGSVLSPILYNLY
FT                 VSLLKKILPNDIFLVQYADDNLIYCIHQDIPTAIEKLQQALVTFNAYFENL
FT                 KLQISPQKTKFIIFSNTNMQTNGNHSIEFNDAVIKESKSVKYLGMILDNTL
FT                 SWNEHAEHIIAKSTKQLNILKFLRGTWGGHPKVLKQIYLSLIRSSLEYGLF
FT                 LTHIKNSNRRSKIQKIQNQAIRLALGYRRSTPINVMHLESKIPYFNDRIRY
FT                 LSDNFILKLIAHDTPLKQKIENLSITIANNDRLNIKNNFPIIRSYNEIKSL
FT                 VQNKIQRHLHPIPYDYTYEAIVEQPDINVTSGLHIKKSANPPQEFKDNHSV
FT                 HNLHKNQLIHPKNLKITTQYTIFTDASKMKNQEYTGLAMFMASNNQAYQFK
FT                 IHTEASIFTAEGLAIFLSLNNIINSNFKRAYIFTYSLSILSALKDYTPNKS
FT                 RNTSHIILDIKTLLNKCSQENIKVTLIWIPAHINIKYNETVDSLAKNAIKD
FT                 GTNTIYLLPFSDFGDKIKQKLILNTQQLITDQGTYKGTHYFDHYYKDNEAK
FT                 PWFTKINLPREHITTINRIRPNHYNLSASLFRKNIIQSPTCECGYESENID
FT                 HILWDCPRFSNQRYSLINKLNHYHSKKKKNTPKDTTSLLKNPNEKPARIIT
FT                 EYLKRCNLQI*"
XX
SQ   Sequence 5957 BP; 2503 A; 1249 C; 738 G; 1467 T; 0 other;
     ccggcgacgg acgggagcca ctggcgcgat acaacgtgtt tctaaaactt tcttcatttc        60
     tttatttatt tgatgccata tctttcctaa aactaaaaac acaactactt ataaaaataa       120
     aaaactcgtt agaatagtta caactttaaa ctcactagta taatcagcaa taactactaa       180
     tatcggaaca ataatttcat aacctaaaac tgagttgaaa ctacccagcg aggatacagc       240
     cctaggggct tattctcaac aaacacctaa ggatgacaga cgaatctgat ggagaagacc       300
     atataatgca aacatcacct ataaaaacct tcccagaaga gagaacaaaa aaagtggatg       360
     atctacgaaa aagaaagacc acagaacagt cacaatataa gccagaagag agaaatagta       420
     caaaaagagc acatattaca caacaagata acaacaagga caaaacgtct caagaaacaa       480
     atgcacaaca gcatggaaat gatcagacag acgtcctatt atacacagaa gatattcctc       540
     ctccatataa gatcatcata gtacctacaa cagaaacgaa gacctctgaa aatacctcag       600
     agagctctac taagtcaata agactagaac ccatccatat agctaaaaca atcataccta       660
     ttcttccaaa caattccata gatgaaataa aaaaatctgg gaaaaataga gttaccgtga       720
     tcacacataa cagaaaggta gccaacaaga tactaacact tgaaattcta aaagagaaaa       780
     aactcacccc atttatacca agctcataca tatacaggcg aggagtaatc aaacacgttc       840
     caacagatat tacagaaaat gaaatcaaaa acaatattaa acttacatca ccagttgcaa       900
     atcttacaat acaaagtgtc aagagatttt acagatacaa caaatctgag tctggtacaa       960
     catcaacgcc aacaaccact attatgatca ccttcaaagg acaagttatg ccacaatacg      1020
     ccgatctata cagaataaaa cactcagttg aagcttacat ccctacagta aaactctgcg      1080
     ccaactgcta tcgacatgga cataccaagg ccttttgcaa gtcgaaaact agatgtattt      1140
     actgcggcga aactgatcat gactccacac tatgcaccat gaaaaacgaa acccttaaat      1200
     gcataaattg cactgaaaac cacctcccaa ccgacagaaa ctgcaaaatt cgcataagag      1260
     aacaacagat cattactatg gcaacaaaaa gaaatatttc tgttcaggag gctaaacaaa      1320
     actacaatga actaatatta aacaagaaaa gaataagatt ctcagaattc ccagagctta      1380
     gcatcgccac aactccagat gaactcgact atgcaagtca aatttataac actccaagaa      1440
     gaagactatt cacagataca cttaaaacat ccagaccagt taattctaga cctcttacta      1500
     ataactcgcc aaaaaagctt cacaataatg taattaacaa agaaaacaac caactcacat      1560
     atcaacacaa aaatatttta atctccccaa atggagatta caaactaaac tatactgcta      1620
     ccaaacaaaa tcaaggaaac tccccaaaca ataacaacta tctaaccaca actccaaatc      1680
     tttcaacact agcatctcct cttctcacgc taaatgaaaa aggattcctc ctagataaaa      1740
     aaataagctt aactcaaaat gatatagtca attacctcaa taatgaccca aatttctacg      1800
     aaaatatttt aaacatatta caagaaaata gctatcagaa tagccagaat acttatattg      1860
     agaacaacag tctataatat aatatctgag tcaatattga tctaaaagag ataaaaattc      1920
     ttcaatggaa ttgtcatagt ctcaagagca aactaccaat ttttagaaac tcaatagaag      1980
     aatatgatat cattgcattg caagaaactt ggttagacga attatctaac ccgaaaattc      2040
     ccaactacag tataataaga aaagatagga aaaatagcta cccatctggt ggagtcgcca      2100
     taatcattag aaataatatc ccatttaaaa taatagaaaa catatactac agtgagaaaa      2160
     caatggagac aatagctata tcaatccctt taatacagca caacaatgat accaatgaag      2220
     aaaactctct cttaattgcg tccgtatacc gtaaccctgc aaaacaaaca tccataaacg      2280
     aatggaacag cttatttaat agcattaaaa actataaaaa tatctacata ggtggagatt      2340
     tcaacgctca ccatttttca tggggctcga gcaaaatatg caactcagga gagttcctag      2400
     tagaatcatt attagacaac aacttacata ttctcaatga tggtacacat acatattaca      2460
     ctagtaaaac aataactcta cccaacaact ctgttgttca gaagataatc tcatctcctt      2520
     tagacttaac gttaatatcc acaaatttac tgcacaaaac aacttggaag attcaagaag      2580
     acaacatgta tagtgatcat tatccaatat tatgcaccat ctctttggaa atagagacga      2640
     ttcctttcaa ctctactcac aaaataagtc acaaaaatgt caattggaaa ctattctcta      2700
     cactccttaa aaactacttc gaaaaaaatc accaaacaat agaaaacatg accatagatg      2760
     aacaatataa ctttctcatc aacttatgca ctacatctat tatacaacta aacactaaaa      2820
     acaatagcaa gaagacctat gaaaaccaag cacttttctc aggtgatatt tttaacacct      2880
     ctccaacaga gcttatatca caatatcatc cgagcctggt aaaaactttc aacaaacgtc      2940
     caatcaaagc cccatggtgg aaccaggtgt gtacagagtt agcaagagaa agaagacttg      3000
     caagcttcaa attattaaaa aaccctacac aagaaaatct agatgacctt aaacaaattg      3060
     aaaaatctac aagaaaaaaa ttaaacaaaa taaaaaagat agttttaggg aacatgttaa      3120
     tgaaatcttt acgcttgata cagactccaa aactatatgg aacttcatac aaagctataa      3180
     aaacataact aacattaaac cagaatacgc cccaaatgac atagaaatac tggaaaatat      3240
     aaatcaattc atagaagaat ttacctcacc agcacaatct aacaatacag atgacgacca      3300
     atacagtata gaacctaaca ataacaatcc atatcaagaa ctagatgcac cattttctcc      3360
     aattgagtta aacctagcta taaaggaagt taagaaacaa tcttctccag gacttgataa      3420
     agttgattat gaaatgatca aaaatactcc ggactgtttc aaagagctat tactaaaact      3480
     aatacatttc tactatacaa actgtaatag tccaatcagc tggaataaat tcctaataat      3540
     actactacca aaagacagca agaaaaattc agacccatct cattggcctc atgtttatta      3600
     aaattaactg aaaaaatgat caacacacgc atacactttt tcgtagaaaa aaaatgattt      3660
     gattcctgac acgcaaaatg gatttaggaa agctaaatcc tgccatcatg cattagcata      3720
     tatcctcaca gacatccacc tagctacgca caaaaatctt tatacactct gcgtactaat      3780
     cgacatcaaa tcagcctttg ataatgtatg tccaaaaatt ttggacaaaa tactaaaaga      3840
     cctaggaata ccatataaaa caagatcctt tatatacaag cttatttcaa ataaacaact      3900
     attcttcaaa ataggaaaca aactacaagg accatataaa aaaaaatgga gttcctcaag      3960
     gaagtgtatt gagtcccatt ttatataatt tatacgtaag cttactcaaa aaaatcttgc      4020
     caaacgacat atttttagta cagtatgctg acgacaacct tatctactgt attcaccaag      4080
     atatacccac agctatcgag aaacttcagc aagccctagt aacattcaat gcatattttg      4140
     aaaaccttaa actccaaata tcacctcaaa aaacaaaatt cattatcttc tcaaacacta      4200
     acatgcagac aaatggaaac cactcgatcg aattcaatga tgctgtaata aaagaatcta      4260
     aatcagtaaa atatctgggt atgatattag ataatactct ttcctggaat gaacatgccg      4320
     aacatattat agccaaatcc acgaaacaac ttaatattct caaattccta cgtggtacat      4380
     agtggggagg tcaccctaaa gtattgaagc agatttatct ttcactaatt agaagctctc      4440
     tagaatatgg actattttta actcacataa agaactcaaa tcgaagaagt aaaattcaaa      4500
     aaatccaaaa tcaagcaatt cgattggctt taggctacag aagatccaca cccatcaatg      4560
     ttatgcactt agaatcgaaa ataccatact tcaatgaccg tatacgatac ctttcagaca      4620
     actttattct gaaactaata gctcatgata caccgctaaa acaaaaaata gaaaatctta      4680
     gtattacaat agctaacaat gacagactta atattaaaaa taattttcct ataattagat      4740
     catataatga aataaaatct ttagtccaaa acaaaattca aagacatctt catccaattc      4800
     cctatgatta cacatatgaa gcaatagtgg aacaaccaga tattaacgta acttctggac      4860
     tacacataaa aaaatcagct aatccacccc aagaatttaa agataaccac tcagtacaca      4920
     atcttcactg atgcatcgaa aatgaaaaat caagaataca caggactggc aatgtttatg      4980
     gcatcaaata atcaagccta ccagttcaaa atacatacag aagcatcaat ctttacagct      5040
     gaaggtttag caatttttct gtcgttaaac aacatcataa actccaattt caaaagagct      5100
     tacatcttta cttattcact gagtatcttg agtgcactga aagattatac gccaaataaa      5160
     tctaggaaca cttctcatat aatacttgac attaaaacct tgctaaacaa atgttcacaa      5220
     gaaaatataa aagtcacttt aatttggatt ccagcacata tcaacataaa gtataatgaa      5280
     acagtagatt cacttgcaaa aaatgctata aaagatggaa ctaacactat ctaccttcta      5340
     cctttctcag actttggtga taagattaaa caaaaactca tcttaaacac tcaacagctc      5400
     ataacagatc aaggaaccta taaaggcaca cactatttcg atcactatta caaagacaac      5460
     gaagcaaaac catggttcac aaagataaac ctaccaagag aacatataac caccatcaac      5520
     cgtataagac caaatcatta caatctgtcg gcaagtctat ttaggaaaaa cataattcaa      5580
     tctccaacat gtgaatgtgg ctatgaatct gaaaacattg accatatact atgggattgt      5640
     cccagatttt caaatcaaag atactcactt atcaacaaac tcaaccacta ccactcaaaa      5700
     aagaagaaga atacaccaaa agatacaaca tcactgctaa aaaatccaaa tgaaaaacca      5760
     gcaagaataa ttactgaata cttgaaacgc tgcaatctac aaatttgaac tctaacttga      5820
     atttaaattc aaaccaagtt tatgcaagac aatccaaatc tacattacca tcagtcaaac      5880
     atgcaaggtg gcacatcgga gtcgcgtccg ctcttggaca gcgatccaca gccaataaca      5940
     aaaagaagaa gaagaag                                                     5957
//
ID   I-1_PBa     repbase;    DNA;    INV; 6592 BP.
XX
AC   .
XX
DT   22-MAY-2012 (Rel. 19.03, Created)
DT   22-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   I-type retrotransposon sequence - a consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-6592
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 747-747 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           316..2058
FT                 /product="I-1_PBa_1p"
FT                 /translation="MNEESNKGKRPATEDTLDQLMIDATNTENENEEWKTV
FT                 ERKKKKARKQFSQTEKSAGETSNPNGPKTRDIGEDQSEEEMETEGEGDTLA
FT                 TAGCNKGSQSVSSSEMQQTNNTNNMATSNEQRKREAYVREDGVLKHISEID
FT                 VSKVSRRLEFEENFGSNYKVTLRITERAGTAKKGSNYFKIMHMLKDKRIYP
FT                 KRIMMNGFKMATLYFLNPIDANSAIKKINEDKEKDGYRAGIEDRDTCFKGV
FT                 VPLYLDSIMDFYDLLTKPEDVVRIERMMRRRWNKEENKVEFEPVDSVIITF
FT                 KGNQPRDKISFFNDLAVLRVRPYVAPVMQCYKCFRYGHRKIHCKSEECCIN
FT                 CGEKAHGHCDKPTKCRNCGEGHKSTDRKCDVYERNQRIKKVMAYNNASYKE
FT                 AIEILEGSEEGPTEVYDRYEKPNNWPLLSKPGQKANQRQKPLYRDKVIGKE
FT                 NNRKGKGMEGEAGGADDTSSDDLPYFSPDNSGFIRQEKKREDGRRRTKVPA
FT                 TRTNYYAQFNTREGEITKEKRGIALTQEKEGNLTNFPSNEQEGYSIGKTLI
FT                 TENEKRKEFIARLLVAVEKDWDLKSLLEQALRRA"
FT   CDS           join(2684..5170,5113..6468)
FT                 /product="I-1_PBa_2p"
FT                 /translation="MAPVTILVWNCRGIRNKKEELAMRIGNYDIAVITETK
FT                 QPKNVPIYFTGYKTYRSNNLDSKGGIAMVIHNRLEFDILKCQEDIHESVER
FT                 LGITIKNVSEKVNIVAVYRRPGIRLGKSTWRKILTNDENKYKTYYVGDFNA
FT                 HNTIWNCGDTDRNGENMCEIMXERDLVCYNXDTKSRMGMVDQTSNNLDLIL
FT                 GPIEDLDNIRTYQLQDSWGSDHYPIIMEMDYEIANYIKKTNRISSNKTKWD
FT                 EYSGRVTEIWERTRKALNLDSGDRDTRIRYNLLCESMKMAIEEITPRGRGN
FT                 KKENEKNKINKERANPVKWWDEECEEVIRNRKKAQKKFVRRGTMHAYIEYK
FT                 RCRAIARKVIKLKKTQSFESFCTSINKNISMNYVWNTMRIFRNCKAKIEWN
FT                 KWKSRNREESIKEMIEKLAPPSAENPPMEIRREREEGLRWKDNFTAAEWKR
FT                 ALRMIRKNTAPGRDGIEYDMIKRLPXRMQQEMLVVLNDIWKRNQLPKSWQE
FT                 YQVIFIDKPGQEKVRPIALASCIGKVMERMVNERLVWWAEKNNLINRDQNG
FT                 FRRGRSCADNLTQITTDIRNGFSRGEYTTALFVDVTAAYDNVDLNILIEKL
FT                 EEIGCPSDIVRFVYAWSRVRYTQFIVSGEETVDRRVYKGLPQGAVLSPLLY
FT                 SIYTRNITEELGRGIRTIQFADDIAMYTTSTNREANTLAIQEAANHLANRL
FT                 EKLGLELEPRKTVLVEFNKQGVRDKKVKIRLGEVDIXNSVGARFLGLWFDN
FT                 RVNFHHQVDLVRGKVKKANGLMKYLNKKRRGMEVNTALLLYKSMVRSVVDY
FT                 GLFIYFPREANQRLEWKGLNTQVSGQHRSQPKVGMERTQYAGLRTALGYRN
FT                 STPNNVIIAESKVMLLQDRAEMLARNFLLKIMIYGSEEMRLRMDQLEANEN
FT                 YERYIRPTSNRSCLGNAWSRIKWLKKHAGEGRKFEIFETDYEEITEEMETD
FT                 KYTAKQWKKKIHTDRQLIETIIENNKXRGTIKVMYTDGSRGRKSKSTGVGL
FT                 VIEEQETAYNISLPKECSSFTAEAFAVKTMLELIYQEKIEERRNYLILTDS
FT                 MSTIQALENNLLQVYKNMYIIKARSLYRKIIXSKKCRIIIGWVPAHEGIRG
FT                 NEMADKLAKEASQEPPSEEIKVPYSDFRSIFKRELWNNTQNKIIKDAEYKG
FT                 KFYFENFYKRKRRKPWFGNTNEERYFIVWINRIRSNHFNLNESLARKGYIE
FT                 DARCDCGNESESLEHVVWRCVRYDEERVGMDLELRGMGVRGEINLMDAIRE
FT                 LDWVVLKCIYKFFRKINRII"
XX
SQ   Sequence 6592 BP; 2557 A; 991 C; 1660 G; 1377 T; 7 other;
     agaagaggaa agagggcggt tcgagtggtg cggacgtgtt cgagtggtgt ctggcggttt        60
     tttagtgtta gaaaccctcg gaataggtaa atcagctctt ttcagagctt aataggtata       120
     gattgacgtg caatagtagg atatattaag gaacgggagc aataataggg caatatagaa       180
     gaaataaagg attgcgagga gcccccggga gaggggcggc gagaggagag aagggaaagt       240
     ataagcttga cactgagaga gaatgagacg ctaaagagga caataaggag gctcgaagca       300
     agactaaacg tagaaatgaa cgaagaaagc aacaaaggaa aaaggccagc gacggaagac       360
     acgctggacc aattgatgat agatgcgacg aacactgaga atgagaatga agaatggaaa       420
     accgtagaaa gaaagaagaa gaaggcaaga aaacaatttt cacagactga gaagagcgcg       480
     ggagaaacta gcaacccgaa tggcccgaag acacgtgata taggagagga ccaatcggaa       540
     gaggaaatgg aaacggaggg ggaaggagac acgttagcaa cggcgggctg caacaaaggc       600
     tcgcagtcag taagtagcag cgaaatgcaa cagacaaata atacgaacaa catggcaacg       660
     agtaacgagc aaaggaagag ggaagcatac gtgagggagg atggtgtgct taagcacatt       720
     agtgagatcg atgtgtctaa ggttagtagg agactggaat tcgaagaaaa tttcggaagc       780
     aactacaagg tcacacttag gataacggaa agagcaggta cagccaaaaa aggcagcaac       840
     tattttaaga ttatgcatat gctaaaagat aaaagaatat accctaaacg cataatgatg       900
     aacggattta agatggctac attgtatttt ttaaatccaa tagacgcgaa cagtgctatt       960
     aagaagatca acgaagacaa agaaaaagac gggtacagag cgggaataga agaccgggac      1020
     acgtgcttca aaggtgttgt accgctatac ctggactcaa tcatggactt ctacgattta      1080
     ctcacaaaac cagaggatgt cgtaagaata gaaagaatga tgagaagaag atggaacaag      1140
     gaggagaata aggtagaatt cgagccggtt gattcggtga taatcacttt taagggaaac      1200
     cagcccaggg acaagataag tttcttcaac gatctagctg tactaagagt aagaccatat      1260
     gtggccccag tgatgcaatg ttacaagtgc ttcagatacg gtcatagaaa gatacattgt      1320
     aagagtgaag aatgctgcat caactgcggt gaaaaagcac atggccactg cgacaaacca      1380
     acaaagtgtc gcaactgtgg agaggggcat aaatctacag acaggaagtg tgacgtttat      1440
     gaaagaaacc aaaggatcaa aaaagtgatg gcatataata atgcttcata taaggaagcc      1500
     atcgaaatcc tggagggtag tgaggaaggt ccaacagagg tctatgacag gtacgaaaaa      1560
     ccaaataatt ggccactcct tagcaaacca ggacagaagg cgaatcagag gcagaaacct      1620
     ctgtatagag ataaagtgat aggtaaagaa aacaacagaa aaggaaaagg aatggaaggg      1680
     gaagcgggag gtgcagatga tacaagcagc gatgacctac catacttctc acctgacaat      1740
     tccggattca taagacagga aaagaagagg gaggacggaa gaagaaggac aaaggtacct      1800
     gcaacgagaa ccaattatta tgcacagttc aatacgagag aaggagaaat tacgaaggaa      1860
     aagagaggaa ttgcattaac acaggagaag gaaggaaatt tgacaaactt ccctagcaac      1920
     gaacaggagg gctactcaat agggaagaca ttgatcacag agaatgaaaa aagaaaggaa      1980
     tttatagcca gactgttggt ggcagtggag aaggattggg atttgaaatc cctcttggaa      2040
     caggcactta gacgagctta aacgagacaa gggttgggaa ggagaccaga cgaacagaga      2100
     gcaagataag gaacaacacc agaaggacat tatacgagac agaaatagga tatatagaga      2160
     agaaagaaaa tacagagaaa ataggatagt agaaaaaatg agacaggact tttggaagga      2220
     caacgaatag atcaaaagac atatcatagc attaagttag aacctaagag ttaaattaag      2280
     aaccgtttac cgttttttat agtttataat aagattagga agatttagat cgtttacaaa      2340
     atacaacaga taaaacttaa agaatattag acaataagat taacaataag gtagttcata      2400
     atcgttacgt ttcatagtac aagtagaatc atagtcaatc cataagactg atactctcag      2460
     tagcattgtt aaatttgata ctcaattgct ttttgttttt ttttattatt ttttaaaact      2520
     tttatactct tagattattt tatttttatt ttaactttat ttttatttgt tttacatttt      2580
     attatcgttg ttttataaga aaggccacta cgaaaatttt tacctagagt aatttttctt      2640
     tttataaaat atttaagttg ctattttatt atacccatac acaatggccc cagtcacaat      2700
     attagtatgg aactgtagag ggatcagaaa taaaaaagaa gaattggcca tgagaatagg      2760
     aaattatgat atagcggtta taacggaaac taaacaacca aaaaatgttc caatttattt      2820
     tacaggctat aaaacatatc gatcaaataa tctagatagt aagggaggaa tagctatggt      2880
     gatacacaat agactagaat tcgatatttt aaagtgccag gaggatatac acgaatcggt      2940
     tgaaaggttg ggcattacga taaagaatgt ttcagaaaaa gtcaacatag tcgcggtata      3000
     caggagacca ggtattaggt tgggtaaatc cacatggcga aagatactca caaacgacga      3060
     aaataaatac aaaacatact atgttgggga cttcaatgca cacaatacta tttggaactg      3120
     tggagatacg gatagaaatg gtgaaaacat gtgtgagata atggasgaga gggatttggt      3180
     atgttacaat gamgatacaa aatccagaat gggaatggta gaccaaacgt ctaacaattt      3240
     agatttaata ctgggaccaa ttgaggatct ggataatata aggacatatc agttacagga      3300
     ctcctggggc tcagatcact acccaattat aatggaaatg gactacgaga tcgccaacta      3360
     cattaaaaag acgaatagaa tctcatccaa taagacaaaa tgggatgagt atagcggaag      3420
     ggttactgaa atctgggaaa gaacaaggaa agcattaaat ttggattcag gagacagaga      3480
     cacgcggata agatataacc tactatgcga aagtatgaaa atggccatag aagagatcac      3540
     cccgagggga agaggcaaca agaaagagaa tgaaaagaat aagataaaca aagaaagagc      3600
     aaacccagtt aaatggtggg acgaggaatg cgaagaggtg attagaaata ggaaaaaggc      3660
     acaaaagaaa tttgttagaa gaggaacgat gcatgcatat atagaataca agaggtgcag      3720
     agccatagcg agaaaagtga tcaaattaaa aaagacacag agctttgaat cattctgcac      3780
     atctattaac aagaacataa gtatgaacta tgtatggaat acgatgagga tattcaggaa      3840
     ctgcaaggcg aagatagaat ggaacaagtg gaagagcagg aacagagagg aaagcataaa      3900
     agaaatgata gaaaaactag cccccccgtc cgcggaaaac ccgccgatgg aaattagaag      3960
     agaacgggag gagggattaa gatggaagga caattttaca gcagcggaat ggaaaagagc      4020
     attaagaatg ataagaaaga atacagcacc tggaagggac ggtattgagt atgacatgat      4080
     caagcggttg ccasatagaa tgcaacagga aatgctagtg gtactcaacg acatatggaa      4140
     gaggaatcag ctaccaaaga gctggcagga atatcaagtg attttcatcg acaaaccagg      4200
     gcaagagaag gtcagaccga tagcgcttgc gtcttgtata ggtaaagtaa tggagagaat      4260
     ggtaaacgaa aggctggtat ggtgggcaga aaagaataac ttaataaaca gggatcaaaa      4320
     tggattcaga agagggaggt cctgtgcaga caacttgacg caaatcacca ctgacatcag      4380
     gaatggattc tccagagggg aatacaccac agcgctattt gtggacgtaa ccgcggccta      4440
     cgataacgta gatttaaaca tactcatcga gaagctggaa gagatagggt gccccagtga      4500
     catagtaaga tttgtgtatg catggagcag ggtcaggtat acccagttta tcgtatctgg      4560
     agaagaaact gtggatagaa gggtctataa aggtctaccg cagggggcag tgctgagccc      4620
     actgctgtac tcaatatata cgaggaatat tactgaggag ttaggaaggg gaatacgaac      4680
     aattcaattt gcagacgaca tcgctatgta caccacaagc acaaatagag aagcaaacac      4740
     cctcgcaatt caagaggcgg ccaaccatct ggccaacagg ctggagaagt tgggactgga      4800
     actagagcca aggaaaacgg tcctggtgga attcaacaag cagggagtac gagataaaaa      4860
     agtgaagata aggttgggag aggtggacat acasaacagc gtaggggcaa ggttcctagg      4920
     actatggttt gacaacaggg ttaacttcca tcatcaggtt gacctggtca gaggtaaggt      4980
     caagaaggct aacggcctca tgaaatatct aaataaaaaa agaagaggta tggaagtcaa      5040
     cacggcactg ctgttatata agagcatggt aaggtcagta gtggactatg gtctatttat      5100
     ttacttccct agagaagcca accaaaggtt ggaatggaaa ggactcaata cgcaggtctc      5160
     aggacagcat taggttacag aaatagcaca ccgaataatg taattatagc ggaatcaaaa      5220
     gttatgctgt tacaggatag agcagaaatg ctagcgagga attttctttt aaaaataatg      5280
     atatatggaa gtgaagagat gagattgaga atggatcaac tggaggcaaa cgaaaactat      5340
     gaacgctaca tcagacccac atcgaacaga agttgtctgg gaaatgcctg gtcgaggata      5400
     aaatggttaa agaaacacgc aggagagggt agaaaattcg agatcttcga gacggattac      5460
     gaggaaatca ctgaggaaat ggaaacggac aaatacacag cgaaacaatg gaaaaagaag      5520
     attcacacgg acagacagct gatcgaaact atcatagaaa acaacaaaat sagagggact      5580
     atcaaggtaa tgtacactga tggctccagg gggagaaaga gtaaatctac aggagtggga      5640
     ttagttatag aagaacaaga aacagcatac aatataagcc tgccaaaaga atgctcatca      5700
     ttcacagcag aagcctttgc agtcaaaacc atgctagaac ttatatatca ggaaaaaata      5760
     gaagaaagac gaaactactt aattctcact gactcaatgt caactataca ggctttagag      5820
     aacaacttac ttcaggtata caaaaatatg tatataataa aagccagatc cctgtatagg      5880
     aagataataa amagcaagaa atgcaggatc attataggat gggtccctgc acacgaaggg      5940
     atcaggggta atgaaatggc agataaactg gcgaaggagg cttcccagga acccccctcg      6000
     gaggaaatca aggtcccata tagtgacttc agaagtattt ttaaacgaga attatggaac      6060
     aatacacaaa acaagatcat aaaagatgcg gagtacaaag gaaaatttta ttttgagaac      6120
     ttctataaaa gaaaaaggag aaaaccktgg ttcggtaata ctaacgagga aaggtatttt      6180
     atagtatgga ttaatagaat cagatcgaat cacttcaatc tgaatgaatc attagccagg      6240
     aaagggtata tagaggacgc tagatgtgat tgcggtaatg agagtgagag tttggagcat      6300
     gtggtgtgga ggtgtgtgag gtatgacgag gagagagtgg ggatggactt ggagctgagg      6360
     ggaatggggg tgaggggaga gattaaccta atggacgcga taagagagct ggattgggtg      6420
     gtgttgaagt gtatttacaa gttctttaga aaaataaata gaatcattta atacaggata      6480
     cagagaaact taaaaaggaa tcagataaac ctgtgtcata taaccctagg gttgaagaca      6540
     catagtcgga aatatccgac gtcctccaac cggagggaaa aaaaaaaaaa aa              6592
//
ID   I-1_PPo     repbase;    DNA;    INV; 544 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-544
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3111-3111 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..292
FT                 /product="I-1_PPo_1p"
FT                 /translation="PLYSTISVITRLRLGFVATPVFLAKIRIYDHSLCECG
FT                 LDEGSLEHIFFNCPKLKVHLYDILPTQIPRPINIPFLLTLVYSPLVKVLFK
FT                 FLISNNIKL"
XX
SQ   Sequence 544 BP; 156 A; 103 C; 82 G; 202 T; 1 other;
     tcctttgtat tccacaattt ctgtaataac tcgcctacgt ctgggttttg tcgccacccc        60
     agtatttctt gccaaaattc gtatttatga tcattccttg tgtgagtgcg gtttggatga       120
     gggatcctta gaacatatat tttttaattg tccgaaactt aaagttcact tatatgatat       180
     tcttcctacc caaattccta gacccattaa tattccattc ttgctaacct tagtttacag       240
     ccccctggtg aaggttttat ttaaattttt aatttccaat aatattaaac tgtaattaaa       300
     atatataaat tttgtattta gtgtgtagta tagtaacatt ggtgttgtcc tattacagtg       360
     cctcgattga tatcatcagc taccggtcat ttgtcaatca cactggattc cgtctwtcta       420
     gttaactgct actcaaaatt ttagtctcgt tttatatact ttcaattatc ttcaaccttg       480
     acgttggcga aatcatcgaa ataacgatgg ggtccactaa acattaaaag aagaagaaga       540
     agaa                                                                    544
//
ID   I-1_RPr     repbase;    DNA;    INV; 5117 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5117
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3459-3459 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus. Low-copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           598..1320
FT                 /product="I-1_RPr_1p"
FT                 /translation="MPEYVFIHHVRCLVEPYISRVVQCYNCLRFGHMSNQC
FT                 RSKIRCSLCGEQHDRKDCEKKEDLKCIHCNGNHSATDKKCTEQLRQTKIKT
FT                 IMALENLSYSDAKMRFKNSYAKITDAPPVIYSKREFPPLTLNPNLNSITPQ
FT                 TEPAQPIKRARQISPPKPQFSQKEIESFLIRSTPSKNTPGGLVNFNPYRPE
FT                 ENYIETIRTKDWVCEIIMSVLDSIYPLITSQVREEELIKIIQERVSHFPFK
FT                 "
FT   CDS           1373..4252
FT                 /product="I-1_RPr_2p"
FT                 /translation="MTIQQLRILQWNARSALANKGSLEKCLENEKINIALI
FT                 SETWFKPNSNVKFRGFNLIHKTRSDGKAGVAILLQSSIPYVEINNLHTIDG
FT                 LMSVAVSIPLHVNKNITIVSVYNSPLNKINYNNWDNFIKILPHPLIVGGDF
FT                 NIHHKEVGSSFTDNKGRSLLEAAESNNLIYLNDGTATLVSNIRQKNKSALD
FT                 ISFCSASISPSFKWEVLNDPMGSNHLPILITSEKESIPHVPRRPFSKWKIT
FT                 KADWSLYNTTFSDLINNSCSDLDYSQLINIINKAAECSIPQFQFNSNSVVL
FT                 TKSWWTTECAGSYTAGVRRAFNKYKANPCLDNYIECKKLTSLATRIVKQAK
FT                 RKSWAKFCENLNKSTPIKDIWKKIKNISNKQNSYTPLVNGEWVQHFINTLT
FT                 PELAQNEIKIEENEHIDVNAKYLIDTFTLAELNRVLKSSPNSAPGLDQMHY
FT                 LMLYHMPIRGKKILLQIYNRMWSTGQFPDEWKHYIVIPFLKPNKPPNESSS
FT                 YRPISLSSCVLKTLERMIKYRLEWWCEHYNILPITQFGFRKGKTIQDCLSE
FT                 LTTDIQIALSSNKSTLGLFLDITAAFDNVQLPILATKLNSLGLPATFIRNI
FT                 INLLSGRKLYIKINNKLCEPRIAQTGLPQGGVLSPLLYALYVSNIERMVGS
FT                 QVKILQYADDICLYTSDVTIDGCINHLNETVGRLKEWSTNHGLTISATKTV
FT                 VCPFTRKRRLPLGDTISLGGFSFQVVRQVKYLGITFDKVLSWKQHVQSIET
FT                 RVGKYFNVLRAISHQKWGSDPNISLLFYRTTVRSIIDFGSFLYGQAKMSTL
FT                 KPLQLLQNKSLRLCLGYTKTTPLDVMHSEAGELPVNLRREQLCHRYVLKTM
FT                 SRNEKLYKQICLLSIKDLQMRYWRYKNSPVLSVSFTEVSHLKPLIYIADKL
FT                 PYFNANSEIISQNQPHVKFLQDYSNIPQPIVNRVFLDDISELFPPHTHFYR
FT                 RLQIK"
XX
SQ   Sequence 5117 BP; 1829 A; 809 C; 951 G; 1528 T; 0 other;
     gaaaatgagt gttgaaagtg gaggtccggg acctcctgaa atggaagtaa tggaagctgg        60
     ggtttctttt gaggagaaaa gggataaaaa cgaaggtgaa attgaaggtg atttaagtaa       120
     ggatgataaa gttaaagaat tgtatctacc tacagatgtt ggcccgtttg aaatatatat       180
     ggaaagtaag ggtcaaggac aaggtattgg tcaattacat gcaatgtcag taggtaaatt       240
     aattaataaa tatcatccaa tgattcagaa agacgtggtg gaaattacaa aaatggggaa       300
     aaaccgattg aggttaaagt ttagaaatgg tagtgctgcc aatacattag tactttctga       360
     tgagttgaaa aaagataaat ttgaatgttt tatacccagt tatttattga aaagaaaagg       420
     ggtaattaaa aatgtggatt taactctttc tgatgaggaa atagtaaatg agagtttgtt       480
     taatcagggc agaaatatta aattaatcgc tgctaaaaga tttataagga aatataaaaa       540
     tgggaatatg aaaccaaacc cacattttcg gtactcttga cttttagggg acaagtgatg       600
     ccagaatatg tgtttattca ccatgtacga tgtctagttg agccgtacat atctagagtt       660
     gtacagtgct acaattgctt acggtttggt cacatgagta atcaatgtcg aagtaaaatt       720
     aggtgtagtc tgtgtggcga gcagcatgat aggaaagact gtgaaaaaaa agaggattta       780
     aaatgtattc attgcaatgg aaatcactca gctacagaca aaaaatgcac tgagcaatta       840
     aggcaaacta aaataaaaac tattatggca ctagaaaacc tatcatattc tgacgctaaa       900
     atgcgtttta aaaattcgta cgctaaaata actgatgctc ctccagtgat atattctaag       960
     cgtgaatttc caccattaac attaaatccg aatttaaata gtattacacc acaaactgag      1020
     ccagctcaac caatcaaaag agcgagacaa atttcccctc ctaaaccaca gttttcacaa      1080
     aaagaaatag aatccttttt aattaggtcc accccgtcta aaaatacacc cgggggactg      1140
     gtaaatttta acccataccg accggaagaa aattatatag aaactatacg tactaaagat      1200
     tgggtatgtg agataattat gtctgtgttg gactctatat atccccttat aacgtctcag      1260
     gtaagggaag aagaattgat aaaaataata caagaaagag tttcacattt tccatttaag      1320
     taaatttatt cattcaatta ttatattttt tataaatcaa taatttttat aaatgacaat      1380
     tcaacagtta agaatacttc aatggaatgc acgatcagca ttggctaata aaggcagttt      1440
     ggaaaagtgt ctggaaaatg aaaaaataaa tattgcatta atttctgaga cgtggtttaa      1500
     accgaatagt aatgttaaat ttagaggttt caatttaata cataaaacta gaagtgatgg      1560
     taaagctggt gtagctatac tgttgcaaag ttcaattccg tatgtagaaa taaacaactt      1620
     acatacaata gacggattaa tgtccgtggc ggtgagtata cctttacatg taaacaaaaa      1680
     tattacgatc gtgtctgttt ataattcccc tttaaataaa attaattata ataactggga      1740
     taattttatt aaaattttac ctcacccact gattgtaggg ggagatttca acatacatca      1800
     taaagaagta ggctctagtt ttacggataa taagggtaga agtcttttag aggcggcaga      1860
     aagtaataat ttaatttatt taaacgatgg aactgccaca cttgtttcaa atattcgcca      1920
     aaaaaataaa tcagcattag atataagctt ttgttcagcc agtattagcc cgtcttttaa      1980
     atgggaagtt ctaaatgatc ctatgggatc aaatcaccta ccaatactga taacgtcaga      2040
     gaaagagagt atacctcatg ttcctcgccg accatttagt aaatggaaaa ttacaaaagc      2100
     agactggtct ctttataata caacattttc agatttaata aacaattctt gctcggatct      2160
     agactactca caattaataa atatcataaa caaagctgcc gagtgttcaa taccacaatt      2220
     ccaattcaac tcaaattccg ttgttttaac taagtcatgg tggacaaccg aatgtgcggg      2280
     aagctataca gcgggcgtaa ggagggcttt taataaatac aaagctaatc catgcttaga      2340
     taattacatt gaatgtaaaa aattgacttc tttggccact cgaattgtta aacaagcaaa      2400
     aaggaaaagt tgggcaaaat tttgtgaaaa tttaaataaa agtactccta ttaaagacat      2460
     ctggaaaaaa ataaaaaata tctctaataa acaaaatagt tatactcctt tggttaatgg      2520
     agagtgggtt caacatttta ttaacacact aactcctgag ttagcccaaa atgaaattaa      2580
     aatcgaagaa aacgagcaca ttgatgttaa tgctaaatat ttaatagata cttttacatt      2640
     agctgaactt aatagagtgc tgaaatctag cccgaactct gctcctggtt tggaccagat      2700
     gcactattta atgttatatc atatgccgat taggggtaag aaaatattat tgcaaattta      2760
     taacagaatg tggtccacgg ggcagtttcc ggatgaatgg aagcactaca ttgttattcc      2820
     tttcttaaag cctaataagc ccccaaatga aagtagttca tataggccaa tatcgctatc      2880
     atcatgcgtt ttaaaaacat tagaaagaat gataaaatat agattagagt ggtggtgtga      2940
     acactacaat attctgccaa taactcagtt tgggtttcgc aaaggaaaaa caatacagga      3000
     ttgcttgtca gaattaacca cagacattca gatagctctg tcgtctaata aaagtacact      3060
     tggccttttc ttagacatta ctgctgcctt tgataatgta cagttgccta ttttggcaac      3120
     taaattaaat agtttaggac ttcctgctac attcattaga aatatcatta atcttttatc      3180
     gggtagaaaa ctctatataa aaattaataa taaattatgt gagccacgta tagctcagac      3240
     tggcctgccg cagggcgggg tcttgagccc actattatat gcattgtacg tgagtaatat      3300
     cgaaaggatg gtaggatctc aagtgaaaat cctgcaatat gcggacgaca tctgtttata      3360
     caccagtgat gtaacaattg atggttgcat aaatcattta aacgagacag ttggtcgctt      3420
     aaaagagtgg tcaactaatc atggcttgac gatatctgca actaaaacag tggtttgccc      3480
     cttcaccaga aaacgaaggt tacctttagg agatacaatt tcgttaggtg gtttctcctt      3540
     tcaagttgtc agacaagtaa aatatctggg aattacattt gataaggttc tatcatggaa      3600
     gcaacacgta caatctattg aaacgagagt tggtaaatat tttaatgttt taagggcgat      3660
     ctcccatcaa aaatggggtt cggacccaaa tatttctctt ctattttata ggacaactgt      3720
     acgcagcatt atagattttg gatcctttct ctacggtcaa gcaaaaatgt caacccttaa      3780
     acctttacaa ttgctacaaa ataaaagttt aagattatgt ttaggataca ctaaaactac      3840
     accacttgat gttatgcatt ctgaagctgg cgagctgccg gttaatctca gaagagaaca      3900
     gttatgtcat cgatatgttc tgaaaactat gagcaggaat gaaaaattat ataaacaaat      3960
     ttgtttattg agtattaaag atttacagat gcgttattgg agatataaga actcacccgt      4020
     gttgtcagtt agtttcacag aagtttcgca tttgaaacct ctgatatata tcgcagacaa      4080
     attgccatat ttcaatgcca attcagaaat aatttcacaa aatcagccgc atgttaaatt      4140
     cttacaagac tattctaata ttccgcaacc aatagtaaac agagtatttc tagatgatat      4200
     ttctgaactt ttccctccac atacacactt ttaccgacgg ctccaaatta aatagtgaag      4260
     tgggatgtgc ctattttgat cccaatagca atacaagaaa aatgtttaaa ctgcctgcct      4320
     attctaccgt ttatacagcc gaactgatcg ccatcatcag gctatggtat actcttacac      4380
     ttggatgcca cagatatcac catatttagt gatagtagaa gcgccttaga tgccctgtat      4440
     cattggaagt tggcatcagc caatcattta ataattaaca ttgccgaagc tcttttaaat      4500
     ctgaaaaatc aaggaaagaa tattaagttt ggttggtgca aagctcactg tggtattagt      4560
     aataatgaaa cagtagattt acttgctaag gaggccagta gctctgggag tacttagcga      4620
     tccctctccc gccatcagat ttaaagggct gggtcaaaag aaaaatcatg aaaaatggca      4680
     gtgtaaattt gaaaatcgga taagggcttg ttttataaag caatggtacc acaggttaac      4740
     cataaagtac ggtttaaaga tggtattttg gtaaaagaat gttacgataa taaatagaat      4800
     gagagcaaac catggtattt gtggtcgtat ttgtttagaa taggaaattg gcctctcctc      4860
     tgtgcaggag atgtaatgag acggaggatt ttgaacacgt ggtatggtct gccctagtat      4920
     agtaaagaaa gggaaaagtt tttcaacgag atctcgagat attgcactgt tccccttatt      4980
     ttaaggagat aatattctcg aataatatct atgtgtattc ctttggtaga atttattaaa      5040
     caatacaata tttaaaaact accagccagt tgttgattgg ttaatagtgt aagcactgat      5100
     accaaaaaaa aaaaaaa                                                     5117
//
ID   I-2B_HMM    repbase;    DNA;    INV; 1889 BP.
XX
AC   .
XX
DT   27-FEB-2013 (Rel. 19.10, Created)
DT   27-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2B_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1889
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2795-2795 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. likely 3', 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1875
FT                 /product="I-2B_HMM_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="SLASQLSWSVLPSTHGSDHFPILLSXHNRXPPAPXPN
FT                 XPPKYNLKXANWXEYADSVDCMLGNPPESGNFENIILCYDRFVSAILSAAD
FT                 SHIPKKHSIQNWMHFNPWWDQECSDSVDRRTSAEESYTACMTMENYTEYAR
FT                 NDAKFRRMVGKKKKLGWVNFCESLDPRSPPSLVWTNVKRFRRSLNNAPSPN
FT                 SNNPSLWLNDFANKLAPPFVPSHDLFISPLIESSDEMDACFSFEELNNVLT
FT                 DLRDTSPGEDCVSYSFIARLNEKSKLHFLNLINNIFQSGNIPESWKSQIVI
FT                 PILKPGKCPSDPNSYRPIALASALSKIMERLLKNRLEWTVESRNILAPSQF
FT                 GFRKGLSTTDSLSVFTTDIRRAYAKGEYLVGVFLDVASAYDNVLLPVLRQK
FT                 LHQLSIPPRMAHFVCNLLTGRSISVKHPLLTIPPRLVWKGLPQGSALSPLL
FT                 YNLYTHDLELSVNSFCNILQYXDDIVLYYSSKSVEDITYRLNTALHYLNQW
FT                 LSDHGLALSVAKCRAVVFSKKRVTPDXQIYCGNNTIXLAENVKFLGMILDK
FT                 RLNGIAHAEHVSKKCENGINALRAVSGVWWGAHPYTLKLLXNAIIRSHIDY
FT                 GLFVLDPFNKVATENSIESNTNAYELL"
XX
SQ   Sequence 1889 BP; 511 A; 418 C; 346 G; 595 T; 19 other;
     tctcttgctt cccagctatc atggtctgtt cttccttcca cccatggtag tgaccacttc        60
     cctatwctmc tctctwtgca taatagacwt ccccctgctc ccmwtccwaa twctccmcct       120
     aaatataatc twaaamaagc taactggawt gagtatgccg actctgtgga ttgcatgctk       180
     ggcaatcctc ctgagtccgg taattttgag aatatcattc tttgctatga tcgktttgtc       240
     tctgccatct tatctgcagc tgactctcat atccctaaaa aacactccat tcagaattgg       300
     atgcatttca atccctggtg ggatcaggaa tgctctgatt ctgtcgatcg gcgaacatct       360
     gccgaggagt cgtacacagc ctgtatgact atggagaatt acactgagta tgcacgcaac       420
     gacgcgaagt ttmgaagaat ggttgggaaa aagaaaaaac ttggatgggt taatttttgt       480
     gaatcccttg atccccgttc tcctccttcc cttgtatgga cgaatgttaa gagatttcgt       540
     cgttctctta acaatgctcc cagtcctaat tccaataatc cctctttatg gcttaatgat       600
     tttgctaaca aactggctcc tccttttgtt ccatcccatg atttatttat atcccctctg       660
     attgaatctt cggatgaaat ggatgcttgt ttttcatttg aagaactcaa taatgtctta       720
     acggatttaa gagacactag cccaggcgag gattgtgtct cttactcttt tattgctaga       780
     ctaaatgaga agtctaagct acatttttta aatttgatta acaacatctt tcaatcaggt       840
     aacattcccg aatcctggaa atcccaaatt gttattccca tcctaaaacc tggaaaatgt       900
     ccctctgacc ctaattcata cagacccatt gccctagcat ctgctttatc aaaaattatg       960
     gaacggcttt taaaaaatcg tttggagtgg acagtggaaa gcagaaatat cttagcaccc      1020
     tctcagtttg gcttcagaaa ggggttaagt accacagata gtctcagtgt ttttactaca      1080
     gacattcgac gagcgtatgc caaaggagag tatttggttg gtgtttttct agatgttgcg      1140
     tctgcatatg acaatgttct tcttccggta ctcaggcaaa aattgcacca gctgagtatt      1200
     ccgccgagga tggctcattt cgtatgtaat ctgctgaccg gtagatcaat atctgtgaag      1260
     catccacttc ttactatacc tcccagactt gtctggaaag gtttgcctca aggttctgct      1320
     ctcagtcctc tgttgtataa tttatacact catgaccttg aattgtctgt caatagtttt      1380
     tgtaacattc ttcaatacgs tgatgacatc gtcctttact acagctcaaa atctgtggag      1440
     gacataactt atcgtctgaa tactgcttta cactatttaa accagtggct ctctgatcat      1500
     ggcttggcac tatcagtagc aaagtgccgg gcggtagtat tttccaaaaa gagagtaact      1560
     cctgatkttc aaatttattg cggtaataat actatccawt tagcagaaaa tgttaaattc      1620
     ttaggcatga ttctcgataa aagactgaac ggaattgccc atgctgaaca cgtcagtaaa      1680
     aaatgtgaaa acggcatcaa cgctttaaga gctgtgtctg gtgtgtggtg gggtgcacac      1740
     ccttatactc tcaaactact gtwcaatgcc attatccgta gtcacattga ctacggatta      1800
     tttgtcttag acccctttaa caaagttgct actgaaaact caatagaatc caatacaaat      1860
     gcctacgaat tattatagtg caatgaagt                                        1889
//
ID   I-2_BM      repbase;    DNA;    INV; 5480 BP.
XX
AC   .
XX
DT   28-JUL-2009 (Rel. 14.07, Created)
DT   28-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   A family of I non-LTR retrotransposons from a silkworm -
DE   consensus sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I group;
KW   I-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5480
RA   Kapitonov V.V. and Jurka J.;
RT   "New families of I non-LTR retrotransposons from animals.";
RL   Repbase Reports 9(7), 1532-1532 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus sequence was derived from multiple alignment of
CC   several copies ~98% identical to each other. The 3' terminus is
CC   composed of the (GAA)n microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1618
FT                 /product="I-2_BM_1p"
FT                 /note="ORF1."
FT                 /translation="MSMSSSVGENVPPDRGRSSLDSEMDDLSLILNSPVKA
FT                 SQKRPAEDVLSVPEKRSAPHLPAAASNQHTYTRPGFDNNSVLNYSETDSGP
FT                 FVVHVSRSDGDFAPVSNHTRTLKIAQIIYNGKISGIDEIKNMGRNRAAIIF
FT                 KTYNEANSFLTNPLLSSNKLSAIIPRFQVTRMGVVRQIPVEWSLEDLVSWI
FT                 ECRSVSTTVIKARRMNKKKKIDGKTVWEPTGTVVLSFLGQVLPKHVYCCSV
FT                 SLPVNIYTLPTIQCLKCCRFGHIRDQCRSQARCSRCAGPHEGNSCSVSENN
FT                 ITCLFCSGCHPASDPKCPEHARQRSIKMVMSEENISYIEAARRFPSVRTSY
FT                 ADVANSSLPQKPIFLSRSAPSSNTLPSSSPSSSRHTPSTSYKKTVFIEKSS
FT                 KPILSKSYDRHAHNDIISPPNSCLPNGCALSTPTPCAPATNDNLAELMSML
FT                 LLNILSKFNDILPNNVLIQIHALISSLVNSQPKHNDEGPTMELS"
FT   CDS           1590..5276
FT                 /product="I-2_BM_2p"
FT                 /note="ORF2: AP endonuclease, RT, RNase H."
FT                 /translation="MTKVLQWNCRSIRNKKQEIIYLSNQYNPVLFAVAESW
FT                 LRPDTLLRVPGFSCLRDDRDDGWAGTAILVRRNISFSRITLPPHSSAINIV
FT                 AVRCFNITVVSVYIPHPNSNLIQEFSTLLTSLPCPLLVLGDFNIRHTMWGS
FT                 ELCDSNSSLFLDKLDELNLCLLNDGTPTRRVSPSQSPSAPDLSLSSPSLVN
FT                 SISWSVLSNSHGSDHLPILLTLADSSIPSSIPYEPLLKFRLNKADWQKYSS
FT                 LVQNNLESLPDANDENTLFLYLEFCSILSSAAELTIPLKNSASNKIPSPAW
FT                 WDAECSQIVQKRKEAESEFSKILSLENFLEFQKISAISKRFLRQKKSLAWR
FT                 NFCESLSPRTPASLIWKKIKAFRKSQSDNNINSNSLSWLPDFISKLCPPFV
FT                 PFKPCPLIPSSASNDPMNSSFSFAELCCVLDNLRDSAPGIDGFPYSFIKKL
FT                 SDSSKKIFLNLLNHIFLSSSIPASWKTQLIIPILKPGKDPAQSCSYRPIAL
FT                 SSVLAKIMEHLIKNRLEWIVENRSILPNSQFGFRRGYGTLDSLSLLTSDIR
FT                 VAFSQNRHVIAVFLDISSAYDNVDLHLLRQKLINLNMPPRIVNFIFNLFYD
FT                 RSIIVRILGENSSHRTWKGLPQGSVLSPLLYNIYTAILDTTVNRFCRILQY
FT                 ADDIALYTISNSFSQACNCLNSALFNLNSWLNDHCLSLSIPKCSAVAFSRK
FT                 RVIPEINIEICNQSIPVLSKVKFLGILLDSKLSGVHHLNYICNKVEKSINV
FT                 LRALSGVKWGSHPYSQKLLYNALIRSHFDYGCFVLEPCNKMALTKLNRIQS
FT                 KCLRIISGAMKSSPINALQVECFEPPLALRRQFLADRFFYKVISLSNHPLL
FT                 ALLSQLAQLTETSRYWRHKSVPPLVNSYKKLQNLASPISQYDKFPLFLFSF
FT                 DCLLFRPTTFLNIGIHKDSPGANLQFQNIVQLQWPNHYHLFTDASKLSQNG
FT                 PVGAAVWIPKFKLSLKYKLPQTSSVYSGEAVALLEAALFIKTRGLSKSVIF
FT                 SDSLSCLQDITKFPSHSKVNFEIILKIKETLFQCHCSGLDVTLVWIPSHSG
FT                 ICGNELADSCAKEAVVMGCNKYNKIFPRDLHSLAKSDMLQSWNESWQISRQ
FT                 SVGKHYGNLQPTLPSKPWFSSHCHLPKKIVSAIIRLRLGHVCSPVFLAKIR
FT                 VRDHSLCECGLDEGTLDHIFFDCPNIVSPLYDILPNDIPRPININCLLTLV
FT                 YSKHVNILCKFLSANNIYL"
XX
SQ   Sequence 5480 BP; 1493 A; 1273 C; 882 G; 1832 T; 0 other;
     gagagggtag ttggacatct gtcagatcac acgcgtttcg attattttta gtgtttttcc        60
     cgttttttct gtgtttttaa gaattgtgtt gccctatttt tgttggtggt ggattagttt       120
     aagtttcatt taactggtaa gtgtattttt tatgtcaatg tcgtcctcgg tgggcgaaaa       180
     tgtcccgccg gacagaggga ggtcttcttt agattcagag atggacgatc tttctctaat       240
     acttaattct cctgtaaaag cttcacaaaa acgccctgcg gaagacgtat taagcgtccc       300
     agaaaaaaga tcagctccac atttaccggc agctgcctct aatcaacata cctacacccg       360
     gccaggtttt gataacaatt cagttcttaa ttactctgaa actgactctg gcccttttgt       420
     tgtccatgta tctcgttcag atggtgactt tgccccagtt tcgaaccaca cccgtaccct       480
     taaaattgct caaattattt acaatggtaa gatctcaggg atagatgaaa ttaaaaacat       540
     gggtagaaat agggctgcta ttatttttaa aacatataac gaagcgaatt catttttaac       600
     aaacccatta ctttcatcta acaaattgtc agcaattatt ccacgctttc aagttaccag       660
     gatgggtgtc gtgagacaaa ttcctgtaga gtggtctctt gaggacctag tctcatggat       720
     tgagtgtcgg tctgtttcaa ccaccgtcat taaagccaga agaatgaata agaaaaagaa       780
     aatagatgga aaaacagtat gggaaccgac gggtacagtt gtcctctctt ttcttgggca       840
     agttcttcct aaacatgtat attgttgcag cgtttccctc cctgtaaaca tatatactct       900
     tcccactatt cagtgtttaa agtgttgtcg ttttgggcac attcgtgatc aatgtcgatc       960
     gcaagcccgc tgctctcgat gcgcaggccc ccatgaaggt aattcttgta gtgtttcaga      1020
     aaataacata acctgcttgt tctgctctgg ttgtcatccc gcctctgacc cgaaatgccc      1080
     cgaacatgcc cgtcaaagat caattaagat ggttatgtct gaagaaaata ttagttatat      1140
     tgaggcagct cgcagatttc cttcagtccg cacctcctat gccgatgttg ccaattcttc      1200
     tcttccccaa aaacctatct tcctgagccg atcagctcca tcttcgaata ccctcccgtc      1260
     ttcctccccc tcatcttctc gtcatactcc gtcaacttca tacaaaaaaa ctgtttttat      1320
     tgaaaaatcg tctaaaccaa tactttccaa gtcttatgat cgtcatgctc acaatgatat      1380
     tattagccct cctaactctt gtttacccaa tggttgtgct cttagcactc ccaccccctg      1440
     tgcccctgct acaaatgata atctcgcgga attaatgtca atgctgcttc taaatatttt      1500
     atcaaaattc aatgatatac taccgaacaa cgtcttgatt cagattcacg ctttaatctc      1560
     tagtctcgtc aactctcaac caaagcataa tgacgaaggt cctacaatgg aactgtcgta      1620
     gtatcagaaa taaaaaacaa gaaattattt atctatctaa tcaatataac cctgtcctct      1680
     ttgctgttgc ggagtcatgg ttgagaccgg atactctgct tagggtgccc gggttctcgt      1740
     gtctccgcga tgacagagac gacggctggg caggaactgc tatcttggtc agaagaaata      1800
     tatctttttc tcgcattacc cttcctcctc attcctcagc aattaacatt gtggcagttc      1860
     gctgctttaa catcacagtg gtctcagtgt acatccctca ccctaacagt aaccttattc      1920
     aagaattttc gacactctta acctctcttc catgtcctct cttagtctta ggagatttta      1980
     atatacgcca tacaatgtgg ggttctgagt tatgtgactc aaattcctca ttatttcttg      2040
     ataaacttga tgaattaaat ttgtgtctac ttaatgatgg aactcccacc cgtagagtat      2100
     ccccatccca aagtccaagt gccccagacc tgtccttgtc ctctccctct ttagttaact      2160
     cgatttcttg gtctgttctg tccaactccc atggcagtga tcatcttcca atattactaa      2220
     ctctagccga ttcttccatc ccatcttcaa ttccatatga accccttttg aaattcagac      2280
     ttaacaaggc cgactggcaa aagtattcat ctttagttca aaataatctt gaatctcttc      2340
     ctgatgcaaa tgatgaaaat actctatttt tgtacctaga attttgttcc attttatcct      2400
     ccgctgccga actaaccatt cccttaaaga attcagcttc aaataaaatt ccctcaccag      2460
     catggtggga tgctgaatgc tcccaaatag tccaaaaacg caaggaggct gagtctgaat      2520
     tttctaaaat tctctcttta gagaatttcc tagaatttca gaaaatttcg gccatctcta      2580
     aaagattttt gcgacaaaag aaatctcttg cttggcgtaa tttttgcgag tctctctccc      2640
     caagaactcc tgcctccttg atttggaaaa aaataaaagc atttcgtaaa tcacaatctg      2700
     ataataatat taattctaat tccttgtctt ggcttcctga ttttatctcc aaactctgcc      2760
     caccctttgt gccttttaaa ccttgtccct taattccctc ctccgcctct aatgacccca      2820
     tgaattccag cttctcattt gcagaactat gctgtgttct tgacaacctc cgagattcag      2880
     ccccaggtat agatggcttc ccgtactctt ttataaaaaa attatctgac tcttctaaaa      2940
     aaatctttct aaatctttta aatcatatat ttctctccag ttctattcca gcctcatgga      3000
     aaactcaatt gataatccca attctaaaac caggcaagga tccagctcaa tcttgttcat      3060
     atagacctat tgctctctcg agtgtgctag ctaaaattat ggaacatttg ataaaaaatc      3120
     gtctagaatg gatagttgaa aacaggtcta ttctccctaa tagtcagttt ggctttagac      3180
     gaggttacgg aacattggac agcctgagcc tcctcacttc agatattcgt gttgcattct      3240
     ctcaaaatcg tcatgttata gcagtttttc tagatatttc ctctgcatac gacaatgtcg      3300
     accttcattt acttagacaa aaacttatta acctgaatat gcctcctaga attgtgaatt      3360
     ttatcttcaa tttgttttat gacagatcta ttatagttcg catcttaggt gaaaattctt      3420
     ctcatcggac ctggaaaggt ctgcctcagg gttctgttct cagtcctctg ctttataata      3480
     tttacactgc tattttagat actactgtga accgtttttg ccgtatcctc caatatgctg      3540
     acgatattgc cctctatacc atatctaatt ctttctcaca agcttgtaat tgtctaaatt      3600
     ctgctttgtt taacctgaat tcttggttga atgatcactg cttatccctg tccatcccta      3660
     aatgttctgc ggttgctttc tcccgtaaga gagttatccc tgaaataaat attgaaattt      3720
     gtaaccaatc tattccagtc ttgagtaaag ttaagttttt gggcattctc ttggattcta      3780
     aactctccgg tgttcaccat ttaaactata tctgcaataa agttgagaag agcatcaatg      3840
     ttctacgcgc actctccggt gttaagtggg gttcacatcc ttacagccag aagcttcttt      3900
     ataatgcttt aattagaagt cactttgact atggttgctt tgttttggag ccttgtaata      3960
     aaatggcact tacaaaacta aatcgtattc aatcaaaatg cctcagaatc atctctggcg      4020
     ccatgaaatc ttcccctata aatgccctac aagttgaatg ttttgaacct cctttagcct      4080
     tgcgtagaca gtttctagct gatagatttt tctacaaagt aatttctctc tcaaaccacc      4140
     cccttttagc tctactttcc caacttgctc aactgaccga aacctctaga tactggcgtc      4200
     ataaatctgt acctcctctt gtcaactcgt ataagaaact gcaaaattta gcttctccaa      4260
     tttctcaata tgataaattc cccctctttc ttttctcttt tgactgtctt ttatttcgtc      4320
     ccactacctt cttgaatatt gggatccata aagactcccc aggagcaaat ttacaatttc      4380
     agaacatagt acaactacaa tggcctaatc attatcacct attcactgat gcatctaaac      4440
     tatcccaaaa tggtcctgta ggtgctgcgg tatggatccc caagtttaaa ctctccctaa      4500
     aatacaaact ccctcagact tcctctgtgt actctggtga agctgttgct cttttagaag      4560
     cagctctttt tattaaaacc cgcggtctaa gtaaatcggt aattttttcg gactccttaa      4620
     gctgtcttca agacataact aaatttccat cgcattcaaa agtcaatttt gaaattatat      4680
     taaaaattaa agaaactctg tttcaatgtc actgctccgg acttgatgtc actctcgtct      4740
     ggatcccaag tcatagcgga atttgtggga atgagcttgc tgactcctgt gccaaggagg      4800
     ctgttgttat gggctgtaac aagtataaca aaatttttcc tcgagattta cattctctgg      4860
     caaaatctga tatgcttcaa tcttggaatg aaagctggca gatttctcgt cagtcagtag      4920
     gtaagcatta tggtaacttg caaccgaccc tgccctctaa gccttggttt tcctcccact      4980
     gccatcttcc taaaaaaatt gtctcagcta taatccgtct tagacttggc catgtttgct      5040
     cccctgtttt tcttgccaaa attagagtcc gtgaccattc tctttgtgag tgtggattag      5100
     atgagggtac cctggatcac attttcttcg actgccccaa tatcgtatcc cctctttatg      5160
     atatccttcc caatgacatt ccccgaccta ttaatattaa ttgtttatta actttagtct      5220
     attctaaaca tgtaaatatt ctgtgtaaat ttttatctgc taataatatt tatctctaaa      5280
     gtagttagtc taacatatat ttgtttgtgc tgttcttaaa accacagatt cgcgtatgga      5340
     aaaaccgacc aaatttattt gtatttagat ttagtaattt tttccctctc taagcacctg      5400
     tcatttttgt aaatactttg acattggcaa aatcaatgcc aaaggcgttg gagccaaatt      5460
     atctaaaaga agaagaagaa                                                  5480
//
ID   I-2_BTa     repbase;    DNA;    INV; 5099 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5099
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 695-695 (2018).
XX
DR   [1] (Consensus)
XX
CC   Bothe ends are indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..1391
FT                 /product="I-2_BTa_1p"
FT                 /translation="MQLSFSSWSDANGFLANLPADLGKYNVFIPSYRLIKT
FT                 GLIRGIPPDEPVEDLFASAKCKEEIHQIRRLYRYDRLKKIRIPLPMVTVSF
FT                 ITSKLPEYMYLDYYRVKVSQYVPPVKQCYNCFRFGHTRQRCRGKSVCQRCK
FT                 IGIHPEVDCKGGELRCLNCKGEHLSNSPSCPEWFTNYKVNYIMAEKSVPYR
FT                 EANASLKSYGDVYFLNAYTKKRFSLQENSSPSSGDNSPPIINNVTLKVQNR
FT                 KETNPKNPTNPKNGESTKPPKSQAKKTVTDDFPNVDWLQRNIFSRSYSETD
FT                 IPNRIVLENSMQAHKITTLELVNKIPSPSSSFKVIDNSGTSQDRNPDPSAS
FT                 LDQVGAYEVIAPNSPTPLIGSFWANDFNTDLQDSDISPEVGKSPSKTLMRK
FT                 NMHQETLSDNNLSLKVESKDAKTPKRLEFTPTQNEEKLPKPQPRKSSRKGS
FT                 KRRN"
FT   CDS           1434..5096
FT                 /product="I-2_BTa_2p"
FT                 /translation="MSLNFLSWNIHSVLTKGNRFDLDNIIRLNSISFVMLC
FT                 ETWLKSTDHFKLKNFVTYRNDRGVDPGGAVRNGGGLLTSIHSSFASKMIDN
FT                 LNYRSNVITDIEILVVQLELGPSNKIYLVNFYKHPLYRGNFGPLENVLRSL
FT                 YGEKIILGGDFNSQHPAWGYTHPTNEGRLLMDIFNDNDLVLANNQHLVPTR
FT                 RASKNCRPGVNDLILVKQSIIQKVSFQVQQIAVGSDHYPLTFQLQTDNPLH
FT                 KKNTLTQDHKPRPIHIRKFTRVVKKKFEAVQDQTAISYEKWEHIILESLEE
FT                 ARSPGPPKKPAPVHQTSKFVPWWNAKCQSVKNIRDIAFQQWKADNSWESLA
FT                 IYHEKAAKFKLVVKEEQRKSWHSMCSSLTINTPRTSVWTRLKTLQHCKEPT
FT                 KIKDTSWCQAYLENLTPDSVPNTPPPEEPPNPNLGSPLTFSYDEFLQSFYN
FT                 IKNKCPGKDKITKKILNALPQVAIKCLFNAYIQILSTENIPKSWNEVIIKP
FT                 ILKPMKPENHPTSYRPISLLSFPRKIFEKLLKNKLERFMEKNNLLSPHQYG
FT                 FRRFRSLNDCHSILNKCIINSISKKGFLACIFLDIKGAYDSVDLNKLRQTL
FT                 RACEVPDKMVNLIFNLFHTKEIFVNFNGETIGPRISYIGLMQGSVLSLLLY
FT                 LIYTRSVHRCLSHCMIIEFADDIVLINYNQNLGLAISESQEDLTTINSFLL
FT                 NELSLEISKPKTKIMIFTRKRLVNYVPIMLGHLEIERVADFKYLGIIYEQR
FT                 WNFNLHLKYIRDRVAVNTNLIRFIAGAKWGCNPKILKILAKSLIYPLFEFG
FT                 VPFYLNRVNLKTLNVIINKSIKSVFGLLQSSPNSATYVEVGIPPPSIRAQY
FT                 LTDKFIVKNYNFDQQSRKHTMVNLITLYTNYSYWWNKSVPFLISRLIDNRP
FT                 ILKFIRSDSEIFHSTDFSKELHIPQPIRNKGSINPNDIFLDFMSEHSNATF
FT                 LFTDGSKTDTFTTSAVYIKEPEETLTWSLNPMRSVYSAECKAILEAANLIT
FT                 FLGSPGAFICTDSKSNVSALNSDLSKCDNGELLRIKKFLMENPNVKLVWTP
FT                 GHEGIAGNEKADLGTKMLNNSINYTQEKIHYSNFLPHLKKKAMEKWQEEWE
FT                 SSCTGRRLYGIQEKVSFISWFHKFHWNRSSIKNFIRLRIGHGLFPTHXKRI
FT                 NLKDTDKCECGLLGDLNHILFQCEKLKDRDKMFQDLKNIKYLPPYNITSLL
FT                 HKPSLRKYKII"
XX
SQ   Sequence 5099 BP; 1727 A; 1190 C; 878 G; 1303 T; 1 other;
     aggttaaagg gattgaacat gtctccaacg cagggcgaaa tggtatgcaa ctaagttttt        60
     cttcctggtc tgacgcaaat ggcttcctag ccaacctacc agctgactta ggtaaatata       120
     atgtttttat accaagttac cgactcatca agactggcct tattcgagga atccctcctg       180
     atgaaccagt cgaggatctt tttgcatcag ctaaatgcaa agaagaaatt caccagatac       240
     gccgcttgta cagatatgat cgcctgaaga aaatcagaat accgctacca atggtcacag       300
     tttcattcat aacctccaaa ctcccggagt atatgtactt agattattac cgagttaaag       360
     tctcacagta tgtccctcca gtgaaacaat gctacaactg cttccgcttc ggacatacaa       420
     ggcaaagatg tagaggtaaa tctgtctgcc aacgatgtaa gataggaatc catcctgaag       480
     ttgattgtaa gggtggagaa ctaagatgtc taaattgcaa gggagaacat ctctcgaata       540
     gcccttcctg cccagagtgg ttcactaatt ataaggtaaa ctacataatg gcagaaaaaa       600
     gtgtcccgta cagagaagcc aacgcatctc ttaaatccta cggcgatgta tattttttga       660
     atgcgtatac aaagaaaagg ttttccctac aagaaaattc ctcaccttcc tcaggggata       720
     acagcccacc cattataaat aatgttaccc tgaaggtcca aaacaggaaa gaaactaacc       780
     ccaaaaaccc aacaaatccc aaaaacggcg aaagtaccaa accgcctaag agtcaagcaa       840
     agaaaactgt cacagatgat ttccccaacg tagactggct gcaacgtaat atattcagcc       900
     gtagctactc agaaacagat attcctaaca ggattgtctt agaaaattcc atgcaggccc       960
     ataagattac tacattggag ctagtaaata agatcccatc tcctagtagc agctttaaag      1020
     tgattgacaa cagcggaaca tcacaggacc gcaaccctga tccctctgcc tcccttgacc      1080
     aagttggcgc ttatgaagtt atcgccccaa acagccccac tcctttaata ggatcctttt      1140
     gggcaaatga ctttaatacg gacctccaag actccgatat ttcaccagaa gtcgggaaat      1200
     ccccctccaa gacccttatg aggaaaaaca tgcatcagga aaccttgtct gataataact      1260
     taagcctgaa agttgaatca aaggacgcca aaactcctaa aagattggag tttaccccaa      1320
     cacagaatga ggaaaagcta cctaagcccc agccgagaaa atcctcaagg aagggtagca      1380
     agagaagaaa ctaaatcaac tctttctaag tcctatatat tttaattgtt accatgagcc      1440
     tcaacttcct gtcttggaac attcatagcg ttctaaccaa gggcaataga tttgacctag      1500
     ataatatcat acggctaaat tcaatttcat ttgtcatgct ttgtgaaact tggctcaaga      1560
     gcacagacca tttcaaactt aaaaattttg taacatacag aaatgacaga ggagttgatc      1620
     caggtggagc tgttagaaat ggagggggtc tcctcacatc gattcattct tcattcgcta      1680
     gcaaaatgat tgacaacctg aattatcgtt caaatgtaat tactgacata gaaattttag      1740
     tagtgcagct agaacttggt ccctcaaata aaatttatct ggttaacttt tataaacacc      1800
     cactctacag gggtaacttt ggcccattgg agaacgtcct ccgctccctc tatggagaaa      1860
     aaatcatcct gggtggcgac tttaactctc agcaccctgc ctggggttat acccacccaa      1920
     ccaatgaagg tagactccta atggatatct tcaacgataa cgatttggtt ctagcgaata      1980
     accaacatct ggtaccaact agaagagctt caaagaactg cagaccaggg gttaatgacc      2040
     tgattctagt aaaacagagc ataatccaaa aagtatcctt ccaagtgcaa caaatcgcag      2100
     taggcagtga tcattatcct ctcaccttcc agttgcaaac agacaaccct cttcacaaaa      2160
     agaataccct cacccaagat cataaacctc gtccgatcca tatccgaaag ttcaccagag      2220
     ttgtgaagaa gaaatttgaa gctgtccaag accaaactgc tatctcatat gagaaatggg      2280
     agcatattat cctagagtcc ctggaagaag cacgatcccc tggcccaccc aaaaaacctg      2340
     cacctgtgca ccagacatct aaatttgtac cttggtggaa cgccaaatgc caatctgtaa      2400
     aaaacatccg agatattgca tttcaacaat ggaaagctga caactcgtgg gaaagcctcg      2460
     ctatttacca cgagaaggcg gccaaattta aactcgtagt aaaagaagag caaagaaaaa      2520
     gctggcacag tatgtgctcc tcacttacga ttaatacacc aaggacaagt gtatggacta      2580
     gattaaaaac cctgcaacat tgcaaggaac caactaaaat caaagataca tcgtggtgcc      2640
     aggcctactt ggaaaatctc actcctgata gtgtaccaaa cacccctcct ccagaggaac      2700
     ccccaaatcc caacttagga tctcctctta ccttctcgta tgacgaattt ctccaatctt      2760
     tttataacat caaaaataaa tgccctggta aagataagat caccaagaaa atcttaaacg      2820
     ctctcccaca agttgctatc aaatgcttgt tcaacgctta tattcaaatt ctatcaacag      2880
     agaacattcc caagtcgtgg aatgaggtga taatcaagcc tatcttgaag ccaatgaaac      2940
     cagagaacca tccaacatct taccgaccta tatctttatt atcatttcct agaaaaatct      3000
     ttgaaaaact tttgaagaat aagcttgaac gtttcatgga gaagaataat ctgttgtccc      3060
     ctcaccaata tggtttcaga aggttccgat ccttgaacga ctgccacagt attctgaata      3120
     agtgcataat taattccata tccaagaaag gtttcctcgc ctgtatattc ttggatatta      3180
     aaggagcata cgactcggtt gacttaaata agttaagaca aactctaagg gcatgtgaag      3240
     tccctgataa gatggttaat ctaattttta atctcttcca taccaaggaa atctttgtca      3300
     atttcaacgg agagaccatt ggcccccgca tctcttacat aggtttaatg caaggttcag      3360
     tcttaagcct gctattgtat ctaatatata caagatctgt acaccgatgc ctcagtcact      3420
     gcatgatcat agaatttgcc gacgacattg tcctcattaa ctataatcaa aacttgggcc      3480
     tagcaatttc agagtctcaa gaggatctca ctacaatcaa ctcctttctc ttaaacgagc      3540
     tatcgctgga aatatcgaag cctaaaacta aaatcatgat cttcaccaga aaaaggctag      3600
     ttaattatgt tccaatcatg ctaggacatc tggagataga gcgagtcgca gatttcaaat      3660
     atcttggcat tatatacgag caaagatgga attttaattt gcacctaaag tacatcagag      3720
     accgtgtggc ggtgaacact aatctcatca gatttatcgc tggcgccaaa tggggctgca      3780
     atcccaaaat ccttaaaatc ctagcaaaat cgctcattta cccactcttc gaatttggcg      3840
     tcccatttta ccttaaccgg gttaatctga aaaccctgaa tgttattatc aataagagca      3900
     tcaaaagtgt ctttggacta ctccaatcat ctccaaatag tgcaacctac gttgaagtag      3960
     gcatcccccc gccttcgata agggctcaat acctgaccga caaattcata gttaaaaact      4020
     acaacttcga ccaacagtct agaaaacata ccatggttaa tctaatcaca ctttacacca      4080
     actacagcta ctggtggaac aaatccgtac ctttcttgat tagcaggcta atagataatc      4140
     gcccaatttt gaaatttatc agatctgact ccgaaatatt tcattccacc gatttcagca      4200
     aggaactcca cataccacag ccaattagaa ataaaggatc tatcaacccc aatgatattt      4260
     ttctggattt tatgtcggaa cattctaatg ctacgttttt gtttactgat ggaagtaaga      4320
     ctgacacctt cacaacatca gctgtataca tcaaggaacc cgaagaaacc ctaacctggt      4380
     cgctaaaccc tatgcgatca gtctacagtg cagaatgcaa agccattctt gaggcagcca      4440
     acttaataac attcctcggc tcccctggtg cctttatttg taccgactcc aagagtaatg      4500
     tctctgccct aaactctgat ttaagtaagt gcgacaacgg tgaattacta agaatcaaaa      4560
     aattcctcat ggaaaaccca aacgtcaagc ttgtctggac cccaggacat gaaggtatag      4620
     ctggaaacga aaaagctgac ctaggaacca agatgttgaa caactcgatc aactatactc      4680
     aagaaaaaat ccattactct aacttccttc cgcatttgaa gaaaaaagcc atggaaaaat      4740
     ggcaagaaga atgggaatct tcctgcaccg gcagaagact gtatggaata caggaaaaag      4800
     tttcctttat ctcctggttc cacaaattcc attggaacag atcctctatt aagaacttta      4860
     taagattacg aataggacat ggtctattcc caactcacmt taaacgcata aacctcaaag      4920
     ataccgataa atgtgaatgt ggcctgctag gcgatctaaa ccatatcctc ttccaatgcg      4980
     aaaaactaaa agacagagat aaaatgtttc aagacttaaa aaatataaaa tatctccccc      5040
     cctacaatat aacttcatta ttacataaac cctcgttaag aaaatataaa ataataaat       5099
//
ID   I-2_CQ      repbase;    DNA;    INV; 4177 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   27-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4177
RA   Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 107-107 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identity to consensus (only 4 copies found).
XX
FH   Key           Location/Qualifiers
FT   CDS           201..3956
FT                 /product="I-2_CQ_1p"
FT                 /translation="MAIEPSTESSQDALXPNDDNQNPNLTNQQAVSSTSRP
FT                 ALTDGAADDTXTTTPTTTAIAVQWNLRGMAARTNELQQLLEQHRPVVVALQ
FT                 EIKTKKKKDKNKLDRRRYDWXFCFXPSDGYSNGVALGIXKDVPHRYIDVQG
FT                 PLQVVAARVEWPVLATFVSIYICREDGKTEIEDKLAQLVAQLPAPVVLLGD
FT                 FNAHSPLWGGNHIDQRGKAIECLLGKHNFIILNDGSHTRVDPSNGRSSAID
FT                 LSIVSDTIAPELVWSVDVDTRESDHYPIFIHSVDHTRAKRSRRPRWKYDSA
FT                 DWTKFANEVQKPNPESAQEIEEAIIAAAEVSIPRTSTRVGRKAVHWWTNEV
FT                 EEAVKDRRKKLRRLRKLGDDHPNKIQALNEFKLARNTARQIVEKAKADSWA
FT                 AFVSGIAPSSGTTEIWRRVNVFRNGPKVNIHQLVINGKLSDEPGEVAETLA
FT                 DYFAEVSAARQSTHRRAVPDQPTPTFEGGETSKYNETFSMEELDWAIRKSK
FT                 GLSAGVDNIGYPMIRNLPHLTKTRLLELYNRIWEDGNIPDRWKEGIVVPIP
FT                 KAGKDRKTVGNQRPITLVSCLGKIMERMVNRRLITTLEELGVFGDNQHGFR
FT                 RGKGVDTYLAELESEIQNWIDKRQHGELALLDLAKAYDTAERAPILQNLHR
FT                 WGIRGRMGCFVANFLKNRTFRVAIGSFLSTLRTMESGVPQGTILAVTLFLV
FT                 RMTEVRRYIPKGVSLKLYADDILLVVHGRSAVYVRKKIQEAISSVETWTQL
FT                 VGFELASTKSNVIHICRRNRHEERNPVTTDAGPIELVKYARLLGTGFDGRF
FT                 NFKQHISDTKKMLESRNRVLRVIGGHRISGARKTLLDVHRAIVQSRLFYAW
FT                 GIVSSATPAAIRPLGPAHVAGIRNASGAFRTSPVKSIYAEAGQLPFDYAAT
FT                 EATVTKAARLEAGGTISPQHPLGVRARREFQRITQEEMPEIARKLRIGDRP
FT                 WHAEKPKVDWEMTAYVRAGETSQKVAAAFGIVREKYGEHRQIFTDGSKDED
FT                 FTGCGFVDGTEQTAIRLPAQCSIFSAESFAILKALERIPEGDGETTVIYTD
FT                 SASVAEAVENGVSHHPWVQAIEREMRRTGAILCWVPGHCGIIGNERADETA
FT                 RSAKRLDRINLPVPAQDFLSWAKNLIRLAWEREWHGERDLFLRRVKPNTLP
FT                 GSDRDNQEEQRALTRLRIGHTRLTHEGLFRGERVTCDTCGVPMTVEHILCT
FT                 CRKFDGLRDDGAQSVYGALCNDPEAEKTLLRYLKNTKLLTEI"
XX
SQ   Sequence 4177 BP; 1150 A; 1152 C; 1154 G; 712 T; 9 other;
     cgttctgaat atagcgacgg aagcgagtcg acactggtcg aaagcgagga aggcctcgaa        60
     gcttccgaaa ctaacccctc canacctccc aaccaaatta ccaccccaaa aacaaaccct       120
     caaaaccctc ccaaccaaaa atcctcggga acggggaagt ccaagaattc gaagaacaaa       180
     accaaaaaga gtaaacagtg atggccatcg agccatccac tgagagctct caagacgctc       240
     taanccccaa cgacgacaat caaaacccga acctnaccaa tcaacaagcg gtgtcgtcca       300
     cctctcgccc tgccctcacg gatggggcag cggatgacac cncaaccaca actccaacaa       360
     cgactgcgat cgcagtccaa tggaacttgc gcggcatggc cgccaggacc aacgagctac       420
     aacaactctt ggagcaacac cgcccggtgg tggtggcact ccaagaaatc aaaacgaaaa       480
     agaagaagga taagaacaag ctggaccggc gacgatacga ctggnaattc tgtttcaanc       540
     ccagcgatgg gtattcgaac ggagtcgcnc tcggtatcga naaggacgta ccgcatcgct       600
     acatcgacgt tcaaggaccg cttcaagtcg tggctgctcg cgtcgagtgg ccagtattag       660
     ccacctttgt ctccatctac atctgtaggg aggatggcaa gaccgagatt gaagacaagc       720
     tagcacagtt agtcgcacaa ctgccggcac cggtagtact gttgggagac ttcaacgccc       780
     acagtccact ctggggtggg aatcacatcg atcagcgtgg aaaggctatc gaatgtttac       840
     taggtaaaca caacttcatt attctcaacg acgggagtca cacgagggta gacccgagta       900
     acggaagatc atcagcgatc gacctgagca tcgtgtccga cacgatcgcg cccgagctgg       960
     tttggtctgt ggacgttgac accagggaga gcgaccacta cccgatcttc atccacagtg      1020
     tcgaccacac gcgggccaaa agatcgagga gaccaaggtg gaaatatgac agtgctgact      1080
     ggaccaaatt cgcgaatgag gttcagaaac caaacccgga gagcgcacaa gagattgaag      1140
     aagcgatcat agctgccgcc gaggttagta tcccacgaac gtctaccagg gtgggtcgca      1200
     aagcggttca ctggtggacg aatgaagtcg aagaggcggt caaggatcgc cgcaagaaac      1260
     ttcgtcgctt gcggaagctg ggcgacgacc acccaaacaa aatccaggcg ctgaacgagt      1320
     tcaaactagc acgcaacaca gcgagacaga tcgtggagaa agctaaggct gacagctggg      1380
     ctgccttcgt ttcgggcatc gctcctagta gcggaacaac cgagatctgg cggcgggtta      1440
     acgtgttcag aaacgggccg aaagtcaaca ttcaccagct ggtgataaat ggaaaattgt      1500
     cagacgagcc cggggaagtc gctgagacgc tagctgacta cttcgctgag gtgtcggcgg      1560
     caagacaatc gacccaccgt cgggcggtac cggaccaacc aacgccgacg ttcgaagggg      1620
     gagaaacctc caaatacaac gaaacattca gcatggaaga actggattgg gctatccgga      1680
     agtcgaaagg gctatcagcc ggagtagaca acatcggata tccaatgatc cggaaccttc      1740
     cgcacctaac caagacccga cttctcgagc tctacaaccg gatatgggag gacgggaaca      1800
     tacccgaccg ttggaaagaa ggaatagtcg tcccgatccc gaaagctgga aaagacagga      1860
     agacagtcgg aaaccagaga ccgataacac tcgtcagctg cctcgggaaa atcatggaaa      1920
     gaatggtcaa ccgacgtctt atcaccacgc tcgaagagct gggagtcttt ggggacaacc      1980
     aacacggctt ccggagaggc aaaggtgttg acacctatct cgccgaactg gaatctgaaa      2040
     tccaaaactg gatcgacaaa cgccaacatg gggaactcgc tctactggac ctcgcaaaag      2100
     catacgacac cgcggaacgg gcaccgattc tccagaacct tcatcggtgg ggaatccgtg      2160
     ggcggatggg ctgctttgtt gcgaactttt tgaaaaaccg gaccttccga gtagctatcg      2220
     ggagcttcct gtcgacactt cggaccatgg agagcggggt gccgcaggga acgattctgg      2280
     cggttacact tttcctggtc cggatgacag aggttagaag gtacatcccc aaaggagtgt      2340
     ccctcaaact ctacgccgat gatatcctcc ttgtcgtcca tggtagaagc gcagtctatg      2400
     ttaggaaaaa gatacaggag gcgatctcca gtgtcgaaac ctggacccag ttggttgggt      2460
     tcgaactggc ctcgacnaaa tccaacgtga tccacatttg ccgacggaat cgacacgagg      2520
     aacgaaaccc tgtgaccacc gacgctggtc cgattgagct ggtcaagtac gcgcgactgc      2580
     ttggaacggg ctttgacggg aggttcaact ttaaacagca catctcggat accaaaaaga      2640
     tgttagagag ccggaaccgc gtactccgag taattggagg ccaccggatc agcggtgcga      2700
     gaaaaactct actcgacgta caccgtgcaa ttgtgcagtc gcggctattc tacgcttggg      2760
     gaatagtcag ttcggcgaca ccagcggcca ttcgaccact tggacccgca cacgtcgctg      2820
     gaatccgaaa cgcctccgga gcgttccgaa caagtccggt caaatcaatt tacgccgaag      2880
     ccggacaact tcctttcgat tacgccgcaa ccgaggcgac agtaaccaaa gccgcaaggc      2940
     tggaagcagg agggaccatc agcccacagc acccactggg ggtgagagct agacgggaat      3000
     tccagaggat cacccaagaa gaaatgcccg aaatcgcgcg aaaacttcgg atcggagacc      3060
     gcccctggca tgcggaaaag ccaaaggttg actgggagat gacggcctac gtccgagccg      3120
     gagagacctc ccagaaggtc gcggcggcgt tcggcattgt cagagagaaa tacggggaac      3180
     atcgtcaaat attcacggac ggatccaaag acgaggactt caccgggtgc ggattcgttg      3240
     atggcacgga gcaaacagcc atccgactgc ccgcacagtg cagcattttc tccgcagaat      3300
     cgttcgcaat cctgaaagct ctagagcgaa ttcctgaagg agatggggaa actacggtga      3360
     tttacactga ctctgctagc gtggccgagg cggtggagaa cggcgtatcc caccacccct      3420
     gggtacaggc cattgaaagg gaaatgagac gcacaggagc catattgtgc tgggttcccg      3480
     gccactgtgg cattatcgga aacgaacgcg ctgacgaaac ggcgagatcg gccaaacggc      3540
     ttgaccgcat taatctacca gtcccggccc aggactttct gtcatgggcc aaaaacctca      3600
     tccgcctggc atgggagagg gaatggcatg gcgaacggga tctcttcctt cgccgggtca      3660
     aaccaaacac cctgccagga tccgaccgag acaaccaaga agaacaacgc gcgctaaccc      3720
     gcctccgtat cggacacacc cgccttaccc atgagggtct cttcaggggc gaacgggtca      3780
     cgtgcgatac atgtggagtt cctatgaccg ttgagcacat cttgtgcacc tgcaggaagt      3840
     tcgacgggct tcgtgatgat ggagcccaaa gcgtttatgg agcactgtgt aatgacccgg      3900
     aggcggagaa gacgctcctc cgatatctta agaacaccaa gctgctaacg gaaatctagt      3960
     accactgtcg cgcccggaag tcccggggcc cccctgacca caagtctttg gaggcgtgga      4020
     acagggacaa cccctcggct cttccggggc gcctgggaaa gatcaagaag aacccacggg      4080
     aagtccggga gactcggggc ccccctagcc acaagtcttt ggaggagtgg aatagggaac      4140
     acccccgggc tcccggttta ccggtggaag aggacgc                               4177
//
ID   I-2_DAn     repbase;    DNA;    INV; 5330 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5330
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 379-379 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..1388
FT                 /product="I-2_DAn_1p"
FT                 /translation="MPPDINRLFKTSNTESKFMTINRTDNNTFKGLNPFLI
FT                 KKVIDYTCNGEVETVKVTKVGSLLVKTKNNLQALKLKKMTTFHDFPVIVSE
FT                 HKTLNFSKGVIYSNDLRNIDDETILQELKPQNVSEIRKIKKIENNEPKETG
FT                 LIIVTFASLTLPETMMIGYERVNIRPYIPLPMRCRNCLRLGHPTIACTSNK
FT                 TCNNCSAEQHTAIDEICSNDKFCINCKYSLTDNKHSPLDKSCPEFVKQKEL
FT                 TSIKTIEKVEHKTALNIYHSRHIHQPTLYSTVSTEKSNIQASTTTKPQSIS
FT                 SKHLKNYKNTAITPAVTKPQQRNATTYDDLDSHMDTTPPTASTSTLAPISS
FT                 LNSSISEELKLRIYTNKHNTLAKSLKSKEKNEQKQKKNNKNKNQLNSDSDG
FT                 F"
FT   CDS           1459..5115
FT                 /product="I-2_DAn_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonulcease H."
FT                 /translation="MLKIIQWNMNGYINNYNQLQIIIKNHSPKIISIQETH
FT                 LHGNQNIPIPINYTLYQVNSATNRFGGVALLIHNSLQHHNEPINAFDFDTI
FT                 AVTIYSKIKFTITSSYIPPNKNFTIQNLRNIYDNLQPPLLITGDFNSWHRS
FT                 WGSINNNKRGNTLFKFINQSSLITMNNGSATHFTTHHTFTHIDLAFASPPL
FT                 NLNSKWHTDSSLACSDHYPIHIDLFEEHNMNNPTERPRFNLXKANWPLFKD
FT                 IADKLSTDKPPSSNINKEAANITRIIILAANEAIPQSRHSKRKRNVPWWDK
FT                 TLQQLKNEKRIAWNILKRNINTTNILTYKKANAKLKREIKIRKKMSMENFT
FT                 AEINPNSPIGEIWTKINRFCGLKARHNIHCLTNPNDPTQSILDRNEIANTL
FT                 CTHWSNTSRDSHFHAIFLERKSNPILNTHIPSPAALKIEKDITFIELLAAL
FT                 NQLKGKTPGRDRISYPMLKNLSKTLQYRLLNLFNNILKSHIPQQYKASSII
FT                 PIPKANLNKTDVNSYRPISLNPCISKVLDKIIAKRLWWLATNGKLLDNRQM
FT                 GFRKGKSVSDSLAMLDYQITTSLSRKNHTSIISLDFAKAFDRIGIHSIIDE
FT                 LNAWKIGPKILRYTKNFLTNRKITVLVNKSYSNPQPLYNGIPQGSPLSVIL
FT                 FAIAFNQLNKILATHKNTEFTAYADDFTIMYKLGKIQNSLNIDPLLNDINQ
FT                 WCNYSGASLSTSKCKHLHICRKKNCNFTLQSNNSPLQNVTSLKILGITITK
FT                 NYKWNKHIDNLALELSRRLDVIKCLSSKKFCSNTNTIIYVVNSILMSKIDF
FT                 GIHLYGNAPKSTLSKLKTIYHSAIRIALNAFRTTPINNLLYEANILPIEHR
FT                 TTYATQKNIKIIINSKNSPIEKIYNKIINSKKTPKFPSSLHNTIEHLKNLN
FT                 IHISPLTCKREKTPHWLHHITNINTSLHTLPKEDTPPLTYQLRFNELKNTL
FT                 PNRHFLYTDGSKSADGVSFSVTTENEIIEHHILPQYSSIYTAEISAILKAC
FT                 NYASKXGGKFVICTDSLSALQEIDNIKNHNFYTSSIRNILNKDNKNKILLL
FT                 WVPGHCGIIGNEFADETAKKAHNFPLIIQNNFNQIDILKHIKRNTQSLKYE
FT                 ILNHSSSHYKNINHDSEPSKNISRADSIKFLRIRLGHTNLTHSHLLTKTPP
FT                 PICPNCNTILTLQHLLIDCPALEQERSKLKLKQTLTEITSFDNIQQTVQFL
FT                 KNIKMYHTI"
XX
SQ   Sequence 5330 BP; 2203 A; 1361 C; 640 G; 1122 T; 4 other;
     gtaccactct aagctgcgaa gtgtaaagac gtgtgactaa cgaccagtag acaaaaagaa        60
     aaaaccaaac cttatcagtt aaaaaaaacc aacaactata agccagtgat atacaaaaac       120
     aaaaaacaca aaaaacgaga gcaaaaagag aaaaaagaga ggcagaacaa aaaaaagggc       180
     aggtgcccaa aaactattaa aaaatgcccc ccgacataaa tagactattt aaaacatcca       240
     acacagaatc gaaattcatg accataaata gaacagacaa taatacattt aaaggcctga       300
     acccattctt gattaaaaaa gtaatagact acacgtgcaa tggtgaagtg gagacagtca       360
     aggtcacaaa agtaggatca ttattagtca aaacaaaaaa caacctgcaa gcactaaaac       420
     taaaaaaaat gaccaccttc cacgactttc ctgtaatagt tagcgaacac aaaacgctca       480
     atttctccaa gggagtcata tactccaacg atcttcgcaa cattgacgac gaaactattt       540
     tgcaggaact taaaccacaa aacgtctcag aaatacgcaa aattaaaaaa attgaaaaca       600
     atgaacccaa agaaactgga ctgatcatcg taaccttcgc atcattaacc ctcccagaaa       660
     caatgatgat aggatatgag agagtaaata tacgcccata tatccctctc ccaatgagat       720
     gcagaaactg ccttagactt ggacacccca caatcgcttg cacatcaaac aaaacctgca       780
     acaactgctc agccgaacaa cacacagcca tagacgaaat atgctccaac gacaaattct       840
     gcattaattg taaatacagt ctaacagaca ataagcacag cccattagac aaatcttgcc       900
     ctgaatttgt taaacaaaag gaattgacat ctatcaaaac aatagaaaaa gtggaacaca       960
     aaaccgctct aaatatatac cattctcgac acatccacca accaacttta tactccaccg      1020
     tttcaaccga aaaatctaac atccaagcat caacaaccac caaaccgcaa tccatttcat      1080
     ccaagcatct aaaaaattac aagaacactg ccatcactcc tgcagtcact aaacctcaac      1140
     aaagaaacgc aacaacatac gatgatctcg actcgcacat ggacaccacc ccacccacag      1200
     catccacctc cacattagct cctatttcat cactwaactc ttccatatcg gaagaactta      1260
     aacttagaat ctacacaaac aaacacaaca ccctcgccaa atccttaaaa tctaaagaga      1320
     aaaatgaaca aaaacaaaaa aaaaacaata aaaacaagaa ccaacttaat agcgacagcg      1380
     acggtttcta aaaaaaaaaa aaaacagcaa attagttcta tcaatcagtc aaatccaaaa      1440
     aaaaaaaact cttaaacaat gctcaaaata attcagtgga acatgaacgg atacattaac      1500
     aactacaacc aattacaaat tattataaaa aaccatagcc ctaagataat ctccatacaa      1560
     gaaacacacc tacatggtaa tcaaaatata cctatcccaa ttaattatac actttatcaa      1620
     gtaaactctg ccacaaacag atttggggga gttgcactcc tcatccacaa ctcattgcaa      1680
     catcataatg aaccaatcaa cgcctttgac tttgacacaa tagcagtaac aatatattca      1740
     aaaattaaat tcaccataac atcttcgtac ataccaccca acaagaactt cacaatccaa      1800
     aacctaagaa acatatacga caatttacaa cctcccctac taataactgg agacttcaat      1860
     agctggcaca gaagctgggg ctcaataaac aacaacaaaa gaggtaacac actatttaaa      1920
     tttataaatc aatcttccct cataacaatg aacaacggct cagcaaccca ctttaccaca      1980
     catcacactt tcacacacat agatctcgca tttgcttctc cccctctgaa tctgaactcc      2040
     aaatggcata cagatagctc cctggcctgt agcgaccact acccaataca catcgaccta      2100
     ttcgaagaac acaacatgaa caatcccact gaaagaccaa gatttaacct taamaaagca      2160
     aactggcccc tattcaagga tatcgcagac aagctgtcaa ctgacaaacc ccctagctca      2220
     aatattaata aagaagccgc caatataacc agaataataa ttctggccgc caatgaagcc      2280
     attccccaat cacgccactc taagagaaag aggaacgtcc catggtggga taaaacactt      2340
     caacaattaa aaaacgaaaa acgaattgcc tggaatatac ttaagagaaa catcaacact      2400
     acaaacatac taacatacaa aaaagccaac gctaaactta agcgggaaat aaaaattaga      2460
     aaaaaaatgt caatggaaaa cttcacagca gaaattaacc caaattctcc catcggcgaa      2520
     atttggacta aaattaaccg tttctgcggc cttaaagcta ggcacaacat ccactgtctt      2580
     accaatccaa acgacccaac acaaagcata ctagatcgaa atgaaatagc taacaccctc      2640
     tgcacccact ggtccaatac ctcacgagac agccatttcc atgcaatatt cttagaaagg      2700
     aaatccaacc cgatccttaa cacacacatc ccctcacctg cagctcttaa aatagaaaag      2760
     gatataactt tcatagaact ccttgcagca ctcaaccaac taaaggggaa aacgccgggt      2820
     cgcgaccgca taagctatcc tatgttaaaa aacctatcca aaacactaca atatagactt      2880
     ctgaatctat tcaacaacat actcaaatca cacatccctc agcaatacaa ggcaagcagt      2940
     ataataccca ttcctaaagc aaacctgaac aaaaccgacg tcaactcata ccgacccatc      3000
     tccctcaacc catgcatatc aaaggtcctt gacaaaataa tagctaaacg gctatggtgg      3060
     ctagccacaa atggcaagct tctagataac cgtcaaatgg gatttagaaa gggaaaatcg      3120
     gtttctgatt ctctagccat gctagattat cagataacta catctctttc aaggaaaaac      3180
     catacatcga ttatctcgct agacttcgcc aaagcattcg acaggatagg catccacagc      3240
     atcattgacg agctcaatgc ttggaaaatt ggcccaaaga tcttaagata tacaaaaaac      3300
     ttcctcacca acagaaaaat tacagttctt gtaaacaaat cttactccaa cccccagcca      3360
     ctatacaacg gaataccgca aggatctcca ttgtcagtga tactctttgc aatagccttt      3420
     aaccaactca acaaaatact agctacccac aaaaatacag aattcactgc atacgccgac      3480
     gactttacta taatgtacaa actaggtaaa atacaaaaca gccttaacat agacccacta      3540
     ctaaacgaca tcaatcaatg gtgcaactac tctggtgcat cactctcaac cagcaagtgc      3600
     aagcacctgc atatctgtag aaagaaaaac tgcaatttca ctctgcaatc caacaactct      3660
     cccctacaga atgtcacgtc ccttaaaata cttggcataa caataacaaa aaattacaaa      3720
     tggaacaaac acattgataa cctagctctg gaactatcca gaagactaga cgtaatcaaa      3780
     tgcctgtcta gcaaaaaatt ctgcagcaac acaaacacaa tcatatacgt ggtaaactcc      3840
     attttaatgt ctaaaattga cttcggcata catctatatg gaaatgcacc aaaatcgaca      3900
     ctaagcaagc ttaaaacgat ttaccactct gcaataagaa tcgccttaaa cgccttccgc      3960
     acaaccccaa tcaataacct attatacgaa gccaacatac taccgataga acataggaca      4020
     acatacgcaa cgcaaaaaaa tatcaaaatt ataatcaact ccaagaactc tccaatagaa      4080
     aaaatttaca acaaaataat aaactctaaa aaaaccccaa aattcccgtc ttcactgcac      4140
     aacacaatag aacatttaaa aaatcttaat atacacatat caccgctgac atgcaaaagg      4200
     gaaaagaccc ctcactggct gcaccacatc acaaatataa acacttcact tcacactcta      4260
     cccaaggaag atacaccacc cttaacctac caactacgwt tcaacgaact gaaaaacaca      4320
     ctaccaaaca gacatttcct gtatacagac ggatcgaaat cagctgacgg agtgtcattc      4380
     agcgtaacaa cagaaaacga gattatagaa caccacattc tacctcaata ctcctccata      4440
     tacacagccg aaatatcagc gatccttaaa gcatgcaatt acgccagcaa acawggaggg      4500
     aaatttgtaa tctgcacaga ttccctctca gctttacaag aaatcgacaa catcaaaaac      4560
     cacaactttt acacctcctc cataaggaat atattaaata aagacaataa aaataaaatt      4620
     ctgctactat gggtcccagg acactgcggg atcataggta acgaattcgc agacgaaact      4680
     gctaaaaaag cccataattt ccctcttatc atccaaaaca acttcaacca aatagacatc      4740
     cttaaacaca ttaaacggaa cacccaatcc ctcaaatacg aaatactcaa ccactcctca      4800
     tcacactaca aaaacatcaa ccacgacagt gaaccaagca aaaacatctc tcgagccgac      4860
     tcaattaaat tcttaagaat tagactagga cacaccaacc taacccacag tcacttactt      4920
     actaaaacac cacctccaat ctgcccaaac tgcaacacaa tactaaccct acaacactta      4980
     ttaatcgact gtcctgccct cgagcaagag agatcaaaac taaaattaaa acaaacatta      5040
     actgaaatca cctcatttga taatatacaa caaacagtac aattcctaaa aaacataaaa      5100
     atgtaccaca caatataaat tgaaacttcc atatacataa atatgtaaat agaatctaat      5160
     taaaatactt agtcattaac acttaattta agaacaccac acatgttaca tattataaaa      5220
     tagatcttaa gcagaaggcc attgtagcta ttgcttaata caaaagcaaa aattgcccgc      5280
     actttaaaat tgttggcaat tcctttataa ataaaataaa ataaaataaa                 5330
//
ID   I-2_DBi     repbase;    DNA;    INV; 5292 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5292
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 926-926 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..1332
FT                 /product="I-2_DBi_1p"
FT                 /translation="MLDPPWKRPPAPDGKYLVITRSDNQTFSNTSPFLIKK
FT                 TIDSAVGGEVAECKKTRDGNLLIKTKNKLQAEQLLKLTAMPCNIPIQVSEH
FT                 RSLNSCKGVIYCNDLRGIDEAEILENLKSQKVIEVHKITKRASFGLTSETG
FT                 LIILTYSLLNLPENINIGYEKINVRPYIPQPMRCMNCMRIGHIAKFCKKEG
FT                 SCLKCSRKIHTDAMLGEECQEIPCCINCLENKYPDTNHIPRDRKCPVFITH
FT                 QEVQAIKTLQKVDNRKAWSIYKQRHQHDGSLYASIAKSTQIQVNQGHKEQQ
FT                 SLIEPSPSTTLEQPTTSNQRKIITYDDDDEMSTSSISSGKNTNDKSNPNCI
FT                 VYPKNLTKREKRLLKNDGSKSPIQTRSKVKKIEIKNTTNLAP"
FT   CDS           join(1356..2045,1901..2233,2229..4091,4128..5042)
FT                 /product="I-2_DBi_2p"
FT                 /translation="MSFNILQWNMNGYTNNYNELLILIKQYNPKIISIQET
FT                 HLTPSQNIPIPVNFEIYHTLSIVAKGGVAILIHKSLQHTQISTRHIFDAIA
FT                 LEVHSARKFIIFAAYIPPNQKFSQSDLETMFPTLQNTPSLITGDFNSWNRL
FT                 WGSPKNNRKGNTLGKFIHNNNYIILNNGKPTHFSTHGTYTHVDLTLCSPDL
FT                 KISPPSKLVTHCKEVITSPLSYKCSPYRIKKQIGTYPDLSLNSLLPRSQNF
FT                 STFKISDTLQGSDHFPIVVQMFPLQNKKTNRYLPRFIMNLADWDKYETLTN
FT                 NLNTSLPIAPNTNQEASNINKIILQSATKASPKPRPLNSTTTYHGGIENKT
FT                 RVPKKQKIAWRTFNRNMSTQNLVNFKRINALYRREIRTSKKESIQILTSSI
FT                 SPDTKCETIWNKIRTFCGLHKATSIHCIKDYSSNHTLTDQGDIANAFSKHW
FT                 SLRSDDRNFSTLFLQAKNDIVNNRPHDLPHRTAEFMEQDINFIEFSAALNS
FT                 LKGNTPGYDKINYSMIKHSSKSLKKRIIILFNSILRSHIPQTYKVSTIIPI
FT                 HKPGKDKTLIESYRPISLNPCISKVLDKIISKRLWWFVTTNKLLNSHQLGF
FT                 RKGKSVTDCLLFVDALVSRALTEKRHVSIVSLDFEKAFEKVGLHTIIGQLR
FT                 SWGCGQKTISYVSNFMTNRKIRVRTDQTHSTIQNLHNGIPQGSPLSVILFL
FT                 IAFNSLADIIEKHRHLKFTAYADDFNILIDLKRSKSVISNLDSLFSEISNW
FT                 CSISGASLSLDKCNHLHICRKTNCHCKVETSICPIKTSKEITILGLTLNSK
FT                 YRWNSHINRLKKSLSKPLNIIKCLSSYKYNSHPHTLVQIANSILISKIEFA
FT                 LPIYGNAPKSTLRPIKTYMNSALRSALGAFPSTPTHNLYLEANVCPLETKI
FT                 QFMKAKLWNTIVHCQDTPLYPIVNKIINKQNKKYKNSVLQDCINICSNLDL
FT                 TITPVKNSIRHTPQQKRKATTPKEIFLKEFLETKHKLKNYNLIYTDGSLSN
FT                 EIIGYAITTESSTIKLGVLPEYSSVYAAEATAILDAIEIGLKSRGKTCICT
FT                 DSLSVVESIKNTENSTYLISKIRNLIINNFPKIKLLWVPSHVGIAGNEFAD
FT                 EAAKAATISPLIASTNINKLDRNRYLKSTLLNFAPQLINKTSTWYQTTNVS
FT                 HLNIAHYTKNPLFNKLSKIEQTKLIRLRLGHTRLTHANRFVQPPSNQCKFC
FT                 NCTDISIKHILNECPTFHNIRPKTPNSDLIPLLTNPSPENLLILLTFLKKA
FT                 NIINEL"
XX
SQ   Sequence 5292 BP; 2050 A; 1236 C; 759 G; 1246 T; 1 other;
     cagttcaact tcgacagtca atacgaacgg ttgtgcttct cttgtgatcg atcaaggaaa        60
     aaccttcaag tacccgaagt gaatcaactc gtgaatctat ttatagatct cttatcttat       120
     cgaaagacaa tttgacagcc gctcgtcaat caaaaagtgc agcttaagtc gctaataatg       180
     ctcgaccccc cctggaagag gccccccgca cccgacggga agtacctcgt catcaccaga       240
     tcggacaacc aaacatttag caacacatca ccgttcttga ttaagaagac tatagactct       300
     gccgtaggtg gagaagtcgc agaatgcaaa aaaactaggg acggaaacct tctgatcaaa       360
     acgaagaaca aactacaagc tgaacaacta ctcaaactta ccgcaatgcc ttgcaacatc       420
     ccaatccaag tgtcagaaca cagatcgctt aactcctgca aaggagttat atactgcaac       480
     gacttgagag gcattgatga ggcagaaata ttggagaact taaaatcaca aaaagtaata       540
     gaagttcaca aaattacaaa aagggcaagc tttggtctaa ccagcgaaac gggtctcata       600
     atactgacat actccctgct caacctaccg gaaaacatca acatcggcta tgaaaaaata       660
     aacgttcgac catatatccc tcaaccaatg cgttgcatga actgtatgcg tattggacat       720
     attgcgaagt tctgcaaaaa agaaggatct tgccttaagt gcagccgcaa aattcataca       780
     gatgccatgt taggagaaga atgccaagaa atcccatgct gcataaattg cctagaaaat       840
     aagtaccccg acactaacca cattccaagg gacaggaaat gtccagtctt tataactcac       900
     caggaagtac aagccataaa aacgctacaa aaagtcgaca accgaaaagc atggtccatc       960
     tacaagcaga gacatcagca cgacggctca ttatatgcat caattgccaa atctacccaa      1020
     atccaagtaa atcaaggaca taaggaacaa caaagcttaa tcgaaccctc accatcaaca      1080
     actctggaac aacctacaac aagcaaccaa cggaaaatta tcacatacga cgacgacgat      1140
     gagatgtcca ccagctctat tagttcggga aaaaatacca acgataagtc gaaccctaat      1200
     tgcatagttt accctaaaaa cttaaccaaa agagaaaaaa gattattaaa aaatgacggc      1260
     tcaaaaagcc caatacagac caggtctaaa gttaagaaaa ttgaaattaa aaatacaact      1320
     aacctagccc cttaaattct atctaacttt ttacaatgtc cttcaatata ctacaatgga      1380
     atatgaacgg atacactaac aactataacg aactcttaat cttaataaaa caatacaacc      1440
     caaaaattat ttctatacaa gaaacccatt taacaccttc ccaaaacatc cctatcccag      1500
     taaactttga aatttaccac acattatcca tcgtagccaa aggcggagta gccatactaa      1560
     tacacaaatc attgcaacac acacaaatct ctacaaggca tatwtttgat gccattgctc      1620
     ttgaagttca ttcagctaga aaatttatta tattcgccgc atacattccc ccaaatcaaa      1680
     agttctctca aagtgacttg gaaacaatgt ttccaacctt acagaataca ccatccttaa      1740
     tcacaggcga cttcaacagt tggaatcgct tgtggggatc acccaaaaat aatagaaaag      1800
     gaaacacgct aggaaaattc atacacaaca acaactacat aatcctaaac aatggcaaac      1860
     ccacacattt ctccacacat gggacataca cgcacgttga cttaactctc tgctccccag      1920
     atctcaaaat ttctccacct tcaaaattag tgacacactg caaggaagtg atcacttccc      1980
     cattgtcgta caaatgttcc ccttacagaa taaaaaaaca aataggtacc tacccagatt      2040
     tatcatgaac ctagcggatt gggataaata cgaaacactc acgaataacc taaacactag      2100
     tttaccaata gcacccaaca ccaaccaaga agctagtaac ataaataaaa taattttaca      2160
     gagtgctaca aaagcatccc ccaaaccaag gcccctaaac agcactacaa cgtaccatgg      2220
     tggaatagaa aactagagtc cctaaaaaac aaaaaatagc ttggagaaca ttcaacagaa      2280
     acatgagcac ccaaaatctt gtaaacttta aacgaattaa cgcactgtac agaagggaaa      2340
     tcagaacctc aaaaaaggaa agtatacaaa ttttaacatc cagcatcagc ccagacacta      2400
     aatgcgaaac tatctggaat aaaatacgca ctttttgtgg cttacataag gcaacttcca      2460
     ttcattgtat caaggactac agttcaaatc acacccttac tgatcagggg gatatagcca      2520
     acgcattctc aaagcattgg tctctccgct cagatgacag gaatttctcg acactttttc      2580
     tacaagctaa aaacgatata gtaaacaaca gaccccatga cttaccacac agaactgcag      2640
     aattcatgga gcaagatata aacttcatcg aattttctgc agcgttaaat agcctcaagg      2700
     gaaacacacc agggtacgac aaaatcaatt actcaatgat caagcactct tcaaaatctt      2760
     tgaaaaaaag aataattatt ctattcaaca gcattctaag atcgcacata ccacaaacat      2820
     acaaagtcag cacaataatc ccaatccaca agcccggcaa agacaaaact ttaatcgaat      2880
     cctaccgccc tatatcgctt aatccatgca tatctaaagt attagataaa ataatctcca      2940
     aaagactatg gtggtttgtt acaactaaca aattgcttaa tagtcaccaa cttggcttca      3000
     ggaaagggaa atcggttaca gactgtctac tgtttgtaga cgctttggtc agccgagccc      3060
     tcaccgaaaa acgacatgtt tccatagttt ctttagattt tgaaaaggca ttcgaaaaag      3120
     taggactgca cacaataata ggccaactga ggtcttgggg ttgcggccaa aaaaccataa      3180
     gctatgtaag caattttatg acgaacagaa aaattcgagt acgcacggac cagacacact      3240
     caactattca aaatctgcac aacggcattc cacaaggatc cccactatcg gtaattttat      3300
     tcctaatagc tttcaacagc ctggcagaca taatagaaaa acatagacac ctgaaattca      3360
     ctgcctatgc agatgatttc aacattctaa ttgacctaaa aagaagcaaa tccgtaatat      3420
     ccaacttaga ctctctgttc tctgaaataa gcaactggtg ctcaatctct ggagcatcat      3480
     tatccctaga taaatgcaac cacttacata tatgtaggaa aacaaactgc cattgtaaag      3540
     tagaaacaag catatgtccg ataaaaacat ctaaagaaat aaccatttta ggactaactt      3600
     taaactcaaa gtatagatgg aactctcaca ttaacagatt aaaaaaatca ctgtccaagc      3660
     cgctaaacat tataaaatgt ctttcaagct ataaatacaa tagtcatcct catacactag      3720
     tccaaatagc aaacagcata ttaatatcaa aaatcgaatt cgccttacca atctacggaa      3780
     acgccccaaa gtctacgtta aggccaatta aaacatacat gaactcagct ctccgctcag      3840
     cgttaggagc attcccgtcc actccaaccc acaatctcta ccttgaagcg aatgtatgcc      3900
     ccctagaaac aaaaatccag tttatgaaag ccaaactttg gaacacaata gtacactgcc      3960
     aggacacccc cctttatccc atagtaaaca aaattataaa caaacagaat aaaaaatata      4020
     aaaactcagt actccaagac tgcatcaaca tatgctccaa tctagatcta acaattaccc      4080
     cggtaaaaaa ctaagtaagt ccaacccccc atggcaataa gacctgaagc attagacaca      4140
     cacctcaaca aaaaagaaaa gcaactaccc caaaagaaat atttttaaaa gaatttttag      4200
     aaactaaaca caaattaaaa aactataacc ttatatacac ggacggatct ctatcaaatg      4260
     aaataattgg ctatgcaata acaacagaaa gctcaaccat aaaactaggt gtgctacctg      4320
     aatactcttc agtgtatgca gcagaagcta cagcaatcct tgacgcgatc gagataggac      4380
     taaaaagtag agggaaaacc tgcatttgca ctgattccct gtcagtagtg gaaagcataa      4440
     aaaatacaga aaactcaaca tatcttatct ccaaaattcg aaatcttata ataaacaact      4500
     tccctaaaat aaaacttctt tgggtaccaa gccatgtagg gatagctgga aacgaatttg      4560
     ccgatgaagc tgctaaagca gctacaatct cccccctaat agcttcaaca aacataaata      4620
     aattagatag gaatagatat ttaaaatcaa cactgcttaa ttttgctcca caactgatta      4680
     ataaaacatc cacatggtat caaacaacga atgtcagtca tcttaacatt gcccactaca      4740
     caaaaaaccc cctctttaat aaactatcaa aaattgaaca aaccaagctt atacggttac      4800
     gtcttgggca cactagactg acccatgcaa atagatttgt gcaaccgcca tcaaaccaat      4860
     gcaaattttg caattgtacg gacatatcaa taaagcatat attgaatgaa tgcccaacct      4920
     tccacaatat cagacccaaa acaccaaact ccgatctcat ccctctccta actaatccta      4980
     gccctgaaaa cttacttatc cttcttacat ttctaaaaaa ggccaacatt ataaatgaat      5040
     tataaggcta caaaaaacaa aatgtaaaaa tactttctaa tttcaagttt aagattaaga      5100
     attctatgtt ttctaattaa gtgttatttg ttaattgtaa tctaattgtt aagtgttgaa      5160
     ccttatataa gtactaagaa atatctgaat agataaccag ccgaaagccc cagcagctat      5220
     ggctgtcatc actactgtag cttagttttt ataagtaagc ctacagtgta caaataaata      5280
     aataaataaa ta                                                          5292
//
ID   I-2_DBp     repbase;    DNA;    INV; 5293 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5293
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 702-702 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..1353
FT                 /product="I-2_DBp_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="KVILDNLKSQKVERVEKIYKYIPNQVLNKTPQNETGL
FT                 IKISFKLTHLPDFLYIGYERVEVRTFIPRPMRCNNCFRFGHTAKFCKNTPT
FT                 CANCGLDAHVNYENSEICQNKPNCINCSLKKLPTSDHHARNKDCPVFLSNK
FT                 EVQAIKTLQKVDNRTAWSIYNRRHHDGSLYSSAAKSNLANSNQTSTRKTIS
FT                 YAPNEFETPTSRNXDPDPDEPMSSSSETPCTSHTAKKPAKILPLNTTNRTK
FT                 RLFKNDQSAIITRSKLKSLASIETKTTQ"
FT   CDS           1365..4751
FT                 /product="I-2_DBp_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTLKLLQWNMNGYLNNYNELQVLIKRFTPKIISLQET
FT                 HITYTQPIPIPVNYNIYYTASHSPDGGAAILIHKSIQHKSIPLQSTVDSIA
FT                 LEIQSVKKFNIIASYIPPNKKFNQIDLHSILPPGNSPNLITGDFNSWNTSW
FT                 GSPKINLRGRILGKFILDNNFIILNNGQPTHFSTHRTFTHIDLAFCSPELK
FT                 VYCDFKISDSLQGSDHFPITIEIFPKNQRASQNFVQRFITSRADWEKFEML
FT                 TEDLNNKIPISLNINQEAGNIKKIILQSAYESIPHTRPPKTHHNVPWWNKK
FT                 LEGLNKEKFKAWRTFNRDMSNENLIHYKKMNAKFRRELKLSKADSLFKLTS
FT                 TISPQSKPEAIWSNIKKLCGLHKATQIHAIKDNSSSDLLTSSEDISEAFAS
FT                 YWSLRSEDSQFSNLFIEEKNNLNTLNFLSPPHKTAAFMEQDINFLEFSSAL
FT                 NSLKGHTPGQDKINYDMIRHVAESLKMRIIRFFNNILKSYIPQSYKISTII
FT                 PIHKQGADKTMTESYRPISLNPCLSKTLDKIISKRLWWFATTNKLLNSRQL
FT                 GFKKGKSAMDCLLYADALISRALAEKRHISIISLDFAKAFEKIGLHTITNQ
FT                 LSVWGCGPLIIKYVMNFMSKRKIRVRANDNTSRTHPLHNGIPQGSPLSVVL
FT                 FLIAFNSLSDIIDKHKELQHTAYADDFNILIPLKKDKNISINLDMLFTEIN
FT                 EWCQKSGAMLSISKCKHIHICRKKQCSCQVSTQSAIINTVNELTILGLSFN
FT                 TKYKFKPHFNKLHKSLQKSSNIIKCLSSGKYNSHPNTLVQIVKSLCISKID
FT                 YALPIYGNSSKSLIKPIKTLINSILRTSLGAFCSTPTFNLYLESNIEPLET
FT                 RIEHLQTKTINTIMHANDTPLRKIIQQITKNNTKKYRTSTVDRCISRSLKL
FT                 ELPTSLPHKPKPILPPWFLDINLIDTRLSRLKKSDTNKDIFVQQFLEMKHQ
FT                 LMRKNFTLLFTDGSLNKEIIGFAVTTEDDILKQAVLPSYSTVYAAEAIAIL
FT                 EAIKIAVKTRGKFCICSDSLSTLEAIANINNSSFYISSIRDLLLKHKNKIK
FT                 LLWVPSHVGIKGNENADAAAKGATIAPLFSTTNVNRGDINKQLKSESLQKK
FT                 KLYSCKNHRTGTNKLIPKQLA"
XX
SQ   Sequence 5293 BP; 1931 A; 1319 C; 771 G; 1265 T; 7 other;
     taacaaaaaa kmwmaacagt tcaccttcga cagtctaacc gatcggtcgt gttcttccgc        60
     gagacgtcta cgtwgcgcag cttcaaaaca acaacacaag cacaaagcaa acgaaataac       120
     gaaatcttct tatctctact ccaactggag cgacggacaa ttttggcaga atttaagtgg       180
     ccttaaagtt tgttgacccc acaatgctgg accctccaga catctggaga aaaaccctcc       240
     agacggtata tatttggttg caaccagaac ggacgaagat tcccagcccc tggctgcaat       300
     ctgcccgttc attattaaga agacaatcga caatactatt caaggtgaag tttcaagttg       360
     taagaaaacc aaagacggca atttactgat taagactaaa aacttattac aagccgaaaa       420
     acttaagaaa ccgtcagcat gccttccaac actcatatgt cgatgtcccc attaaaatat       480
     ctgaacaccg aagtcttaac tcgagtattg ggatatatat tcgaacgatc tgcgaggaat       540
     tgatgaaaag tcatcttgga caacctaaag tcgcaaaaag ttgaaagagt cgagaaaata       600
     tataaatata ttcccaacca ggttctcaat aaaactccac aaaacgaaac gggtctaata       660
     aaaatctcat ttaagctaac ccatctgcca gactttctct atattggcta tgagagagtt       720
     gaagtgcgta catttatacc gcgtcctatg cgttgcaaca actgctttag gtttggtcat       780
     accgcaaagt tctgcaaaaa cacaccaact tgcgccaact gtggtctcga tgcccacgtt       840
     aactatgaga actcagaaat ttgccaaaac aagccgaatt gcataaattg ctcccttaaa       900
     aaactcccaa catctgacca ccatgcccgc aacaaggact gccctgtctt cctgtcgaac       960
     aaggaagtcc aggccattaa gaccctacaa aaagttgaca ataggacagc ctggtccata      1020
     tacaacagaa gacaccacga tggatctctc tactcctcag cagccaaatc caatctagcc      1080
     aactcaaacc aaacgtcaac aaggaaaaca ataagctatg ccccaaatga atttgaaaca      1140
     ccaacatcca ggaacmtcga cccagaccca gacgaaccta tgtcatccag ctcggaaact      1200
     ccctgcactt cccacactgc taaaaaaccg gcaaaaatcc ttccgcttaa cacaacaaat      1260
     agaaccaaaa ggctttttaa aaatgatcag agcgcaatta tcaccagatc taaacttaaa      1320
     tcccttgcct caattgaaac taaaacaaca cagtaacaat cataatgacc ctaaaacttc      1380
     tacaatggaa catgaatgga tacctgaaca attacaacga actgcaagtc ctgattaaac      1440
     gctttactcc caaaatcatt tcacttcaag aaacccacat aacgtacacc caaccaatcc      1500
     ctattccagt taactacaat atttactaca cagcctcgca cagcccggat ggcggcgcgg      1560
     caattttaat tcacaaatct atacagcaca aatccatccc tcttcagagc acagttgatt      1620
     ccattgcatt ggaaattcag tctgtaaaaa aatttaatat aatagcatcc tatatacctc      1680
     ctaacaagaa attcaaccaa atagatctcc attcaatttt accaccagga aactccccaa      1740
     atctaattac aggagacttc aacagctgga ataccagctg gggatcccca aaaattaatc      1800
     tgaggggaag aatattagga aaattcattc tggataacaa cttcattatc cttaacaacg      1860
     gacaacccac gcatttctca acacatagga cctttacaca tattgacttg gcattctgtt      1920
     cacctgaact taaagtatat tgcgacttca aaatcagtga ctccctccaa ggaagcgatc      1980
     acttcccaat caccatcgaa attttcccga aaaatcagag agcaagtcaa aactttgtac      2040
     aacgattcat tactagcaga gctgattggg aaaaattcga gatgctaact gaagacctga      2100
     acaataaaat accaatatca ctaaacatta atcaggaagc aggcaatatc aagaaaatta      2160
     ttttgcaaag tgcatacgag agcattccac acacgagacc acctaagacc caccacaatg      2220
     ttccttggtg gaataaaaaa ctggaaggtc tgaataagga aaaatttaaa gcctggagaa      2280
     cattcaatag agatatgtcc aacgaaaacc tcatccatta taaaaaaatg aacgcaaaat      2340
     tcagaaggga attaaaattg agtaaagccg atagcctatt taaattgact tcgacaatct      2400
     ctcctcagtc caaaccggaa gcaatttgga gtaatataaa aaagctctgt ggtcttcaca      2460
     aagctacaca aatacacgct atcaaggaca acagcagtag cgatctgctc accagctccg      2520
     aagatatttc tgaagccttc gcaagctatt ggtcactccg ttcagaagac tcccaattct      2580
     ccaacctttt cattgaagaa aaaaataatc taaatacgct aaacttttta tctcccccac      2640
     acaaaactgc agcgttcatg gaacaggata taaacttcct agagttctca tcggcactaa      2700
     atagcttaaa gggtcacacc ccaggtcaag ataagattaa ctatgacatg atacgacacg      2760
     tcgctgaatc actgaaaatg agaattatcc gctttttcaa caacatttta aaatcttata      2820
     ttcctcaatc gtacaaaatc agcacaatta tacctatcca caaacaaggt gcagacaaaa      2880
     ccatgacgga atcatataga cctatctccc tcaacccatg tttatctaaa acccttgaca      2940
     aaataatctc aaaacggcta tggtggtttg ctacaaccaa caagctactg aacagccgtc      3000
     aactcggatt taaaaaaggg aaatctgcaa tggattgtct gctttacgca gacgctctaa      3060
     ttagcagagc cctcgctgaa aaaagacaca tatccattat atctcttgac ttcgcaaaag      3120
     cattcgaaaa aataggtttg cataccatca caaatcaact atcagtatgg ggctgcggcc      3180
     cattaattat caaatacgtg atgaacttca tgtcaaaaag gaaaataaga gttcgtgcca      3240
     atgataacac ctcaaggaca cacccwctcc acaatggcat tccgcaggga tctcccctct      3300
     cggtagtact ttttctcatt gcgttcaaca gtctctcaga tataatcgac aagcacaagg      3360
     aacttcaaca cacagcttat gcggacgatt ttaacatctt aataccattg aaaaaagata      3420
     aaaacatttc aatcaacctc gacatgctgt ttactgaaat caatgaatgg tgccaaaaat      3480
     ccggcgcaat gctttcaatt tcaaaatgca aacacatcca catttgccgg aaaaaacaat      3540
     gttcatgcca ggtctctaca caatccgcaa ttataaacac agttaacgaa ctaactattc      3600
     taggtctgtc cttcaacaca aaatacaaat tcaaacccca cttcaataaa ttacacaaat      3660
     cactacagaa atcatcaaat ataataaaat gcctttccag cggaaaatac aacagccacc      3720
     ccaacaccct tgttcaaatc gtcaaaagcc tatgtatttc caaaattgat tacgctttac      3780
     cgatatacgg taactcctct aagtcactta taaaaccaat taaaacgtta attaactcaa      3840
     tcttgcgaac atctctggga gccttctgct ctacacccac tttcaatcta tacctggaat      3900
     ctaacatcga accattagaa accagaatcg aacacttaca aacaaaaaca atcaacacta      3960
     tcatgcacgc aaacgacaca cctctaagaa aaattatcca acagataacc aaaaacaaca      4020
     caaaaaaata tcgaacctca acggtcgacc ggtgcatttc tcgaagtcta aagctagaac      4080
     ttccaacctc ccttcctcat aagcctaaac caatattacc gccctggttt ctagacatca      4140
     atctaataga tacccgacta agccgtctaa aaaaatcgga tacaaacaag gacatatttg      4200
     tccaacaatt tctagaaatg aaacaccagc tcatgaggaa gaacttcacg ctcctgttca      4260
     cagacggatc cttgaacaag gaaataattg gctttgcagt aacgacagaa gacgatatcc      4320
     ttaaacaagc tgtccttcca agctactcaa cagtctacgc ggcagaggcg attgctattc      4380
     ttgaagccat caaaatagca gtcaagacta gagggaaatt ctgcatctgc tcagattccc      4440
     tatccacatt ggaagcaata gccaacatca acaattccag cttctatata tcgtcaatcc      4500
     gcgaccttct gcttaaacat aaaaataaaa tcaaacttct atgggtcccc agccacgtcg      4560
     gaatcaaggg caacgaaaat gccgacgcag cagcgaaagg agcgaccatc gctccactat      4620
     tttctacaac aaatgttaac cgtggagaca tcaacaaaca attaaaatct gagtccctac      4680
     aaaaaaaaaa actatattct tgcaaaaatc atcgcactgg taccaacaaa ttaatcccga      4740
     agcaattagc atagccgact acagtaaaac cgcacagacc tccaaccttc caagaagaga      4800
     gattaccaaa ataatccggc ttcgacttgg ccacaccaga ctcacccacg aacatcgctt      4860
     ctcacagata ccaaactatc aatgccagtt ctgcaccacg gacaccatat caatctccca      4920
     tatccttgat gactgccccg ccctacaaac acatagaaca aattttccaa attttaaact      4980
     ctcggatcta ttaattgacc ctaatcctgc aaacctccag ctaattctaa actttcttaa      5040
     atcagctaac cttttgcatc tcatataact ttatatgtta ttaaatttat aaataattta      5100
     agtgtaaata acttgttact acacgtgtaa ataatcatta ttttttataa gttaaattta      5160
     taagctaata tgtatgtaac accgtccggc cgaaagccac cgcagctatg gccaatcccc      5220
     atctgtacct taagtttgca acttttgagt gcagagtaca ataaataaat aaataaaaaa      5280
     tttgaaaata aaa                                                         5293
//
ID   I-2_DEl     repbase;    DNA;    INV; 5359 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5359
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 554-554 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..1454
FT                 /product="I-2_DEl_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="PPFIKNQLTYKVKKPQHGPRASKPGRQSVCAACHQPT
FT                 IKKRRQPQKLDIAFPELPPTSVDNPRYITIASINTEKTISQFSCFAVHRAL
FT                 KMISKNIVTISNLRDGNLLMLVKSQADAEKFLNTTELTGICKVQCKLHEAL
FT                 NFVKGTVYAPYLCDIPEKEIVDELKSQKVTEVYKFMKSYDGVSKPSGVVLI
FT                 TFELYNLPSKIEISWHSVKLREYIPNPMRCKSCQLLGHTTKKCGNTPLCSE
FT                 CAQPSHSPNKCTKICCANCAGEHSASSRQCPKYQEQREILRIKTVRKCTMR
FT                 EAKTIYKTTSHNTVNTASYSSVAKTSHHHSEYANQNKNDKIKIASTEEAPK
FT                 KTHSPSPILHSPPPIPXPSSPIQQSPLPVTPNQPKRPALLAHNKYNLSPAS
FT                 YEYLQEIHAEHESSSQATTSNHKKSTSHNNNLNTHDSDDTMSDS"
FT   CDS           1652..5209
FT                 /product="I-2_DEl_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="SNIAYPKXLTGYFYNISSNTYAKQGVSILVRKCIPHK
FT                 PIPINSNTCSLGIEILAHPNICIFNTYIPPSQLVVANEILKIVDLTTKPIL
FT                 YVGDFNAWSPLWGSSSQNSRGLQIEEVIYKSTLTILNDGSATHHSTHNSFT
FT                 AIDLTLASASLFPFCMWSLKDSLYGSDHYPVKTHIQFQTNPKNLPPSPKYK
FT                 IDKANWDLYRSKCKVHFNFPATNDLNLFAAKIIKGIKASANVAIPQTKPSL
FT                 HPRNVSWWSKTLQDLRQHKQSLWHAYKQTQSTAALISYRKSNALFKYNSKK
FT                 AKRESFERFTSNISPQSSTKKTWSDLNRLIGNFPNNLRTIKYNNVVLQHSA
FT                 DISDAFANFWSDYSKDDNFSHQYKTRKEEILSQEYTPTKLSTASTDLDSNF
FT                 TLSELEYALKYAKGKTPGIDRISYPMLKQLPSEAKYRLLEMXNAMLARGTY
FT                 PHVWKSAIIIPILKPXKPTHELTSFRPISLLPCLSKTLEKMLAKRLMWFIT
FT                 KQKLISPHQTAFKQQHSTLDSLLHLHHYASDALSTKNHVTILATDFERAFD
FT                 RVGVHTVLDQLSRWGVGQKTFNLAKAFMINRTIRVRVNNTLSKFYTLHNGI
FT                 PQGSPLSVVLFMIAFQSLNNIILRHKQIKLSIYADDAIIFSKCKNTTTLNN
FT                 KFKEILEEIQIWGNTSGATLAVNKCKLFHICKKQRCTYPPLSYNNIDIERV
FT                 PFLKILGLTIDKRLTFKQHCNELRINLINRLNIIKFLTSKRSFIHRTTLIQ
FT                 ATRALLLSKIDYGLAIYGWCAPSNLKKFLPPYHAAVRRSIGAFPTTPTKCV
FT                 LAEAGLPDIKTRVAQTTFKLIPKLMCSSNSILLKDFEVASKHRRKFKIQST
FT                 IRRCITFIKRHNIETPYRWNKVIPSPPWKLRATATDTTLHDFQKSRTPITT
FT                 FKQLFKEVTHKYSDRKWLYTDGSKSDATTSFAVVDQHGLIVSWGQLPHHFS
FT                 VFTAEAVAIIQAIKHALELKGRYVICSDSLSTLQGVQNFCNNNNLLSEIRH
FT                 LCIKNNSKIKLLWVPAHIGIDGNELADKAAKLAGRAPCHTIIPGVQQDIWK
FT                 NIKNILLNIELEDWSSFNHWYKQFNPGKKDIKFPTSINRRECAILTRLKTG
FT                 HTNLTHKHILNGERRLNCPNCGAELSVKHLLDTCGHYQNIRINLFGLTPPS
FT                 KLLSDLTASNSNRILSFLRICKIIHQX"
XX
SQ   Sequence 5359 BP; 1794 A; 1384 C; 801 G; 1369 T; 11 other;
     cagtcttcga ctatctctcg tcgcgagcgg acgtctctta tctccaaaca gcggttcccg        60
     tacggtcact gtttttattg gacccacgtg gttcttatct ttcacacctt ttcatcgcgt       120
     attttgcaat aatcttctaa ccaccgttta taaaaaatca attaacgtat aaagtcaaga       180
     agccccagca tgggcccagg gcctccaaac ctgggcgaca atcggtttgc gccgcttgcc       240
     atcagcccac catcaaaaaa agaagacaac cccaaaaact agacatagca ttccccgaac       300
     ttccacctac ctcagttgac aatccaagat atattacaat cgcctccatc aataccgaaa       360
     agacaatttc tcaattctca tgcttcgccg tccaccgtgc cttaaaaatg atctccaaaa       420
     acattgtgac gatttcgaac ctcagagacg gcaatttact catgcttgta aaatctcagg       480
     ccgatgctga aaagtttcta aacactaccg agctaaccgg tatatgcaaa gtacagtgta       540
     agctccacga ggccctcaat tttgtgaaag ggacagttta tgccccgtac ctatgtgaca       600
     ttcccgagaa agaaatcgtc gatgaactta aatcacaaaa agttacggaa gtttacaaat       660
     ttatgaaatc atacgatggc gtgtctaaac ccagcggagt cgtcctaata acattcgaac       720
     tctataacct cccatctaaa atcgaaattt cctggcactc ggtaaaactt cgcgagtaca       780
     taccaaaccc catgagatgc aagtcttgcc aactcctcgg tcacacaacc aaaaaatgcg       840
     gaaacacccc gctctgctcc gaatgtgccc aaccctccca ttccccaaac aaatgcacaa       900
     aaatctgctg tgccaattgc gctggtgagc attcggcctc ttctcgacaa tgccccaagt       960
     accaagaaca aagagaaata ctcagaataa aaacagtcag aaaatgcact atgcgtgaag      1020
     ccaaaacaat atacaaaaca acgtcacata atacggttaa caccgcctct tactcttcag      1080
     tagccaaaac atcacatcat catagcgaat acgcaaacca aaacaaaaat gacaaaatta      1140
     aaatcgcttc caccgaagaa gccccgaaaa aaacccattc cccttccccc attctccatt      1200
     cccctccccc cattccccan ccctcttccc ccattcaaca gtcccctctc cccgtaactc      1260
     ctaatcagcc aaagcgaccc gctctacttg ctcataacaa gtataaccta tctcctgcat      1320
     catacgaata tttacaagag atccatgctg aacacgaaag tagcagccaa gcaacaactt      1380
     caaatcataa aaaatcaact tcmcacaata ataatctaaa tacccatgat tctgacgata      1440
     ctatgagtga ttcatagttt cgtcaatcca aaaccacctt aagctccaaa ccaaatamca      1500
     tcmatcccct cttcccactt atgtccgtta caatagtaca atggaacatg aatggttact      1560
     ttaacaatta tcacgaacta caacttattg ataaacgata cmaaccctga tgttatttgc      1620
     cktcaggaaa cccatatwaa tgtcaactta atcgaatatt gcctatccca agmaacttac      1680
     tggatatttc tataatatta gctctaatac ctatgccaaa caaggtgtta gcatacttgt      1740
     tcgtaaatgt attccccaca agcccatacc aatcaacagc aatacatgct ctttaggtat      1800
     tgaaatccta gcccatccca atatctgtat ttttaataca tatatacctc cttctcagtt      1860
     agtagtagcc aacgaaattc ttaaaatagt agatcttact accaaaccaa tcctatatgt      1920
     gggagatttt aatgcttgga gtccattgtg ggggtcatcc tcgcaaaact ctagaggtct      1980
     ccaaatagaa gaagtcattt acaaatcaac tttaactatc ctcaatgacg gctccgctac      2040
     ccatcattcc actcacaact ctttcacggc tattgatcta acgttagcat ccgcatcgct      2100
     gttccccttt tgtatgtggt ctttaaaaga ctctctatac ggaagcgatc attatcctgt      2160
     aaagacacat attcagtttc aaactaatcc caaaaactta ccaccatctc caaaatataa      2220
     aatagataaa gccaattggg atctgtatcg cagcaaatgc aaagttcact ttaatttccc      2280
     tgccacaaac gacttaaacc tgtttgccgc caaaataata aaaggaatca aagcctcagc      2340
     taatgtagca ataccacaaa ccaaaccctc tctacatccg cgaaatgttt cttggtggag      2400
     caaaactctg caagatctaa ggcaacacaa gcaatccctc tggcacgcct acaaacaaac      2460
     tcagagcacc gctgccctga tttcctacag aaaatctaat gctctattca aatacaattc      2520
     caaaaaagca aagcgggaat ccttcgaaag atttacatct aatataagtc ctcaatcatc      2580
     taccaagaaa acttggtctg acctaaatcg cttaatagga aatttcccaa ataacctcag      2640
     aacaattaaa tataacaacg tagttctcca gcactctgca gatattagcg atgcctttgc      2700
     gaacttttgg tcggactact ccaaggacga caacttctca caccaataca agactcgtaa      2760
     agaagaaatt ctttctcagg aatacacacc caccaaactg tccaccgcct ccacagacct      2820
     tgactccaat ttcactctta gtgagctcga atatgccctt aagtatgcga aaggaaaaac      2880
     acccggtata gaccgaattt catatccaat gcttaaacag ttaccctccg aagctaaata      2940
     ccgactatta gaaatgtwta acgcaatgct agctagaggt acctaccctc atgtgtggaa      3000
     atctgccatc attatcccta tcttaaaacc twacaaacca acacacgaat taacatcctt      3060
     tagacccatt tctttactcc cttgcttaag caaaacgcta gaaaaaatgt tagccaaaag      3120
     gttaatgtgg ttcattacga aacagaaact tatcagcccc caccaaacag cttttaaaca      3180
     acagcatagc actcttgatt ctcttctgca tctccaccat tacgcatcgg acgccctttc      3240
     taccaaaaat catgttacca ttttggcaac tgattttgaa agggccttcg atcgcgtagg      3300
     ggtgcataca gtattggatc aactttcccg gtggggggta ggtcaaaaga ccttcaactt      3360
     agcgaaggct ttcatgatca accgtactat ccgagtaaga gttaacaaca ctctatccaa      3420
     attctatact ctccacaatg gcatcccaca aggatcgcca ctctctgtgg tattgttcat      3480
     gatcgccttc caatccttga ataacataat attaagacat aagcaaatta aactgtcaat      3540
     ttatgcagac gatgccataa tttttagcaa atgtaagaat accactacac taaataataa      3600
     gtttaaagaa atccttgaag aaatccaaat ctggggaaac acctccggtg cgacccttgc      3660
     tgtaaataaa tgtaagcttt ttcatatttg taaaaaacaa cgctgtacat acccaccatt      3720
     atcgtacaat aacatagata tagagcgagt tccttttctt aaaattcttg gcctgacaat      3780
     tgataaacga ctcacattta aacaacactg taacgaactt aggatcaatc ttatcaatag      3840
     actaaacatt attaaattcc taacatctaa gcgttctttc atccatcgga caacacttat      3900
     acaagcgact agagctttgt tgctgtccaa aattgattat ggcctcgcca tttatgggtg      3960
     gtgcgcgcca tcgaacttaa aaaagttctt acctccttat catgctgccg tcagacgtag      4020
     cattggcgca tttccaacga ccccaaccaa atgcgtccta gccgaagcag gattaccgga      4080
     cattaaaacc agagtcgcgc aaactacctt caaattaata ccaaaactca tgtgctcatc      4140
     caactctatt ctgctgaagg actttgaagt agcctcgaag catcgaagga aatttaaaat      4200
     ccaatccacg atacgaagat gtataacctt tatcaagaga cacaacatag aaacgcctta      4260
     tcgctggaat aaagtcattc cgtcccctcc gtggaaatta cgcgccaccg ccacagacac      4320
     tacactgcac gatttccaaa aatcaaggac accaatcaca acgtttaagc agctatttaa      4380
     agaagttacc cacaaatact ccgataggaa atggctttac accgatggtt caaagtccga      4440
     cgccacaacc agctttgcag tggtagacca acacggatta attgtttcat ggggtcagct      4500
     acctcaccac ttctccgttt ttactgcgga agcagtagct attattcagg caattaaaca      4560
     tgctctcgaa cttaagggaa gatatgtcat ctgcagtgat agtctgtcca ccctgcaagg      4620
     agtccaaaac ttttgcaata acaacaacct gttatcagaa attcgtcacc tctgtatcaa      4680
     aaacaacagc aaaataaaac tattatgggt cccggctcat ataggaatag atgggaacga      4740
     gttagctgac aaagctgcaa aactagctgg acgagctccg tgccacacaa tcatccctgg      4800
     agtacaacag gacatctgga aaaacatcaa aaacatattg ctgaacatcg aactggaaga      4860
     ctggtcgtcg tttaaccact ggtataaaca gtttaatcct ggcaaaaagg acatcaagtt      4920
     tcctacttcg atcaacagaa gggaatgcgc cattctcact cggttaaaaa ctggacacac      4980
     aaatctcacg cataaacaca tcctcaacgg cgaaaggcgg ctaaactgcc ctaactgcgg      5040
     agctgaacta tcagtcaaac atctacttga tacctgtggg cactaccaaa acatcagaat      5100
     aaacctattc ggtcttaccc cgccctcaaa actattatca gatcttacag cttctaactc      5160
     caatcgaata ttatctttcc tacgcatatg taaaattata caccagmttt aaatgttaat      5220
     tctcaaatac aaacaaaagt tttatcaatt gtcgagtcga tggccacagt agctagttac      5280
     tcttcttttc ctaaattagt tattatattt taaatttaat tttatgtata atagctaata      5340
     ctgaaaataa aaaaaaaaa                                                   5359
//
ID   I-2_DEu     repbase;    DNA;    INV; 5466 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5466
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 944-944 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           856..1488
FT                 /product="I-2_DEu_1p"
FT                 /translation="MQKRKKLNCKNNPELDHQHSPIDRKCPTFIKNQELTA
FT                 IKTTQKVDHKTAQRIYFERHGSQLRNTYAKTLANATTQMTTNPQSPNTNIN
FT                 THTNTTQPQHKKSNTTPTSGTQTPPSNTTXTGLVTTTLPSSQTLQRHHHHD
FT                 YDKLEDMDTDCITHTRKLTTPYSSQLTEDSLKIKIFHKDKSKNLTTNLKAS
FT                 KTKTKALNKNKLTNNSDSESI"
FT   CDS           1575..5231
FT                 /product="I-2_DEu_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLTIIQWNLKGYVNNYNQLLILIKKHSPHIISLQET
FT                 HIQYTNNIPIPINYKLSTNIATNRFGGVALLVHKSIQHTTPNTTDDLETIT
FT                 INIQSKLKLNISSTYISPTKNITIQTLQNAFNTQQAPSLIMGDFNGWHPSW
FT                 GSPTTNTRGKITQRFIDNAHLILLNDKSPTHFSTHNTYTHIDLTLCSPILA
FT                 PHTKWEILNDLHGSDHFPIIITLFPSTNTQKFNXPFFKLKEANWEKYNLFT
FT                 QQSNEKYPTSQNVNKEAAQINRIILSSANLSIPQTSPNTHPYRVPWWNKNL
FT                 DQLQKEKQKAWKTLNRHITLENIKDYRRKNAKFRYTLKNSKNEASRSFTST
FT                 IQPSTPSSKIWANIRRFCGLNPVKQIHAITNPDNNEVTTTNNEIANIFAKH
FT                 FSNLSHDMNFPEHFRNNKYRNNNVDYTPSPSAQSIEKQISNLELASALQTL
FT                 KGSAPGLNRISYQMIKNSSNTTKNRITALFNKIFDTHIPQAFKTSLIIPIL
FT                 KPNSDKTQTTSYRPISLNCCLAKTLDKIIAKRLWWFATYNNLLNKNQFGFK
FT                 KGKSTSDSLLYVDYLISKSHQHSSLVTLDFSKAFDRVGVHSIIDQLQEWKT
FT                 GPKIINYVRNFMLNRKIIIRVGQHRSNTLPLFNGIPQGSPISVILFLIAFN
FT                 KLSDIISLHKEIKFNAYADDYFLIINFNKKKNISFNLGNLLNDIENWGSYS
FT                 GASLSLSKCQHLHICKKHNCTCVVTFNSMQIPTVNSLKILGINIDSKYKWN
FT                 THIDKLIPALHKKLNIIKCLSSLKFNCSTYTLINVVKATIVAKIDYGLFLY
FT                 GHAPKTTLNKLKPPLNSAIRLALGAFRSTPTNNLLQEANIPPIELKRDLQT
FT                 AKLNKNLIYSKDTPIHKFVKQSKLKKKSPPIIDRIMNLCQQFHLPFEPQKL
FT                 NKLKPPWDLPNLIDTSIRLHKKSNTPKEIYQKIYEDTKSNLKSHNFIFTDG
FT                 SKITDIITYAITTETSILNCGILPPYSSVLTAEIIAILEAIKIIKNKRGKY
FT                 VICSDSLAAIDSIKNTNNNNIYPNKIRSLLTQLAPKIKLIWIPGHAGITGN
FT                 ELADQAAKSTNKSPLIFTPNINPTDIKRQLKSELKARQSQNLIHCSQWYQS
FT                 INTNSHHISDHFRQTHPNWNRLDQTKITRLRLGHTSLTHQHYLNQIPTPPC
FT                 PFCQGNLSLHHILNTCPPLLQTKQTIFQNSNPLHLLNDLNPENINKILLFL
FT                 KSTQLYHKI"
XX
SQ   Sequence 5466 BP; 2234 A; 1413 C; 613 G; 1202 T; 4 other;
     cagtacaact tctacctccg gagagataag tcgtgccaaa acagtgttaa acctagcttc        60
     gcgcaaacca aaaacgttat cagcaaaatc ttgcacaaac aaatatcaac cacaaagaga       120
     aaataaaaaa cccaacaaca ccaaacacac gataacctct aatacgggct caagcccttc       180
     attagctatc atgacggacc caccagacat tttcaaaatc tcatcaaaat cgtatcattc       240
     ccaattaggc gacccgaaat ttataataat taaaagaaag gacaacgact cgtttgaaaa       300
     aatatcacca ttcataatta aaaaatccgt ggactttgcc tgtggaggag aagttgacgg       360
     atgcaaaaaa ataagagacg gaacattgtt aataaaaaat gcctaaaaat gaattgcaag       420
     ccagaaagct tcttaaactt acaaaaatcg tagaaatgga agtgacaaca agtgaacata       480
     aaacattgaa cttctctaag ggagttattt attgtaacga ccttagatat attgacgaag       540
     acactatctt acaagaacta aaaccacaaa aagtaagcga agtaaaaaaa taatgaaacg       600
     acaaaacccc aacactaact ctgatagcag caacaccact ctagttgaaa ccggattgat       660
     cattatcaca tttgaaacac acaaactccc agaaatattg cgaatcgggt acgaaacagt       720
     gcgtgtacga gagtatatcc cacttcctct ccgatgcaga aaatgcctcc gctttggtca       780
     cccagcacca atatgcaaaa gctccgaaac ctgcactaat tgctcagaaa caaaacacac       840
     aaacgacgat gaaacatgca aaaacgaaaa aaactaaact gcaaaaacaa cccagaactt       900
     gaccatcagc acagcccaat cgaccgcaaa tgccccactt tcataaaaaa tcaagaatta       960
     acagctatta aaaccacaca aaaagttgat cacaaaactg cccaacgtat ttacttcgaa      1020
     cgacacggat ctcaattgag gaacacctat gccaaaacac ttgcaaacgc cacaactcag      1080
     atgacaacta accctcaatc accgaatact aatataaata cacacacaaa cacaacacaa      1140
     ccacaacata aaaaatcgaa caccacaccc acatcaggaa cccaaactcc tccatcaaat      1200
     acgacancta ccggtttagt cacaacaact ctaccatcaa gccaaactct tcaacgccat      1260
     caccaccacg attacgacaa actagaagac atggatactg actgcatcac acataccaga      1320
     aaactaacca caccatactc gtcacaactc acagaagact cactaaaaat aaaaatcttc      1380
     cataaagata agtctaaaaa cctaacaact aatcttaaag catctaagac taagaccaaa      1440
     gcgctaaaca aaaacaaact tactaacaac agcgacagcg aatccatata gaaccttaaa      1500
     ctctaagtaa gacttaaact taaaccgtta atactactaa taaagttaag ttacaaactt      1560
     tcatcttcac taaaatgtca ttaacaataa ttcaatggaa tttaaaagga tatgtaaata      1620
     actataacca actccttatt ctcatcaaaa aacattcacc gcatataatt tccctccaag      1680
     aaacccacat tcaatacact aacaatatac caatcccaat aaactacaaa ctatcaacaa      1740
     acatagcaac caacagattt ggcggcgtag cacttttagt tcataagtca attcaacaca      1800
     ctacccctaa caccacagac gacctagaaa caataaccat aaatatacaa tctaaactaa      1860
     aattaaacat atcttcaaca tacatatctc ccaccaaaaa cattactatc cagacactcc      1920
     aaaacgcatt taacacacaa caagcaccct cactaattat gggggatttc aatggttggc      1980
     atccttcctg gggctcacca acaacaaaca cacgaggaaa aataactcaa agatttattg      2040
     acaatgcaca ccttattcta ctgaacgaca aatctcccac tcatttttca actcacaaca      2100
     cttacacaca catagacctc acactctgct ctccaatttt ggccccccac actaagtggg      2160
     aaatactgaa cgaccttcat ggtagcgatc attttcctat tatcatcacc ctatttccat      2220
     caactaatac acaaaaattc aacakaccct tctttaagct aaaagaggcc aactgggaaa      2280
     aatacaactt atttacgcaa caatcaaacg aaaaataccc aacctcccaa aacgtaaaca      2340
     aagaagcagc ccaaattaac agaatcattc tatctagcgc aaacctttcc atcccacaaa      2400
     cctcaccaaa tacccacccc tacagagttc catggtggaa caaaaatctc gaccagctac      2460
     aaaaagaaaa acaaaaagcg tggaaaacac tcaaccgcca tataacacta gaaaacatca      2520
     aagactacag acgtaaaaat gcaaaattta gatacacctt aaaaaatagt aaaaatgaag      2580
     cctctagatc ctttacttca accatccaac catcaacccc ttcatccaaa atatgggcga      2640
     atataagacg cttctgcgga cttaacccag ttaagcaaat ccacgccata acaaacccag      2700
     acaacaacga agtaactaca actaataacg aaattgccaa tatctttgct aaacattttt      2760
     caaacctgtc acacgacatg aatttcccag aacattttcg aaacaacaaa tacaggaaca      2820
     ataatgtaga ttacacaccc tccccatcag ctcaatccat agaaaaacag atttcaaacc      2880
     tcgaactagc gtcagcacta caaaccctca aaggatctgc cccaggactc aacagaatct      2940
     cctaccaaat gatcaaaaat agctccaata ctacaaaaaa cagaataaca gccctattta      3000
     acaaaatatt cgatactcac ataccacaag ccttcaaaac tagccttata attcctatcc      3060
     tgaaaccaaa cagtgacaaa actcaaacca cctcctacag acccatctcc ctcaactgtt      3120
     gcctagcaaa aacactagat aagatcatag ccaaaagact ttggtggttt gcaacttaca      3180
     acaatctgct aaataaaaac caatttggat ttaaaaaagg caaatcgact tcggacagtc      3240
     tactttacgt agactatctc atatcgaagt cacaccaaca cagctcactc gtcactcttg      3300
     atttttcaaa agccttcgac cgagtaggtg tgcattctat aatcgaccaa cttcaggaat      3360
     ggaaaacagg gccgaaaata ataaattacg tccgaaattt tatgcttaac agaaaaataa      3420
     taattcgtgt cggtcaacac agatccaaca cactaccctt attcaatgga atccctcaag      3480
     gatccccaat ctccgttata ctattcctca tagcctttaa taaattgtcc gatataatat      3540
     ccttacacaa ggaaatcaaa tttaatgcat acgctgatga ctattttctc ataattaact      3600
     ttaataaaaa gaaaaatatt agctttaacc taggcaacct tctaaatgac atagaaaact      3660
     ggggttcata ttccggggca tccctatcct tatcaaagtg ccaacacctc cacatttgca      3720
     aaaagcacaa ctgcacttgt gtcgttacat tcaatagcat gcaaatcccc acagtaaact      3780
     cgttaaaaat cttaggaata aatatagaca gcaaatacaa atggaacaca cacatagata      3840
     aacttatacc tgcacttcat aaaaaactaa atataataaa atgcctatcc agtctcaagt      3900
     ttaactgcag cacatacaca ttaatcaacg tggtaaaagc tactattgtt gcaaaaatag      3960
     attacggcct gttcctatac ggacacgcac ccaaaaccac acttaacaaa ttaaaaccgc      4020
     ccctaaactc cgctattcgc ctagctctcg gagcctttcg ttctactcca acaaataacc      4080
     tcctacaaga agccaatatt cctccaatag aattaaaacg agatctgcaa acagccaaac      4140
     taaataaaaa cctcatttat tccaaagaca caccaattca caaattcgta aaacaaagta      4200
     aacttaaaaa gaaatctcca ccaattatag accgtataat gaacctctgc cagcaatttc      4260
     acctaccttt cgaaccacaa aaactaaaca aactcaagcc accctgggac ctacccaacc      4320
     ttatagacac atccatacga ctacataaaa aaagcaacac acccaaagaa atataccaga      4380
     aaatatacga agacacwaaa tcaaacctta aatcacacaa ctttatattc actgacggat      4440
     caaaaataac cgacattata acatacgcca ttacaacgga aacaagcatc ctaaattgtg      4500
     gaatcctacc accatactcc tctgttttaa cagccgaaat catcgccatt ctcgaagcta      4560
     tcaaaattat aaaaaacaaa agaggcaaat atgtaatctg ctcagactcc ctcgcagcaa      4620
     tagactcaat taaaaataca aacaataata atatttaccc aaataaaata agatcactat      4680
     taacacagtt agccccaaaa ataaaattaa tttggattcc tggccatgca ggcattacgg      4740
     gaaacgaact agcagatcaa gcagcaaagt cgaccaacaa aagcccacta atctttacac      4800
     ccaatataaa tcctacagat ataaaaagac aactcaaatc tgagctcaag gcaagacaaa      4860
     gccaaaactt aatacactgt agccaatggt accaatccat caacaccaat agccaccata      4920
     ttagcgacca ttttagacaa acccacccaa actggaatag actcgaccaa actaaaatta      4980
     cccgactacg tctaggacac accagcctca cccaccaaca ctatctgaac caaattccaa      5040
     caccaccttg ccctttctgt caaggcaacc tctccctaca ccacatacta aacacatgtc      5100
     cacctctctt gcaaacaaag caaactatct tccagaactc caacccgcta catctcctca      5160
     atgacctaaa cccagaaaac attaataaaa tactactttt cctaaaatca acacaattat      5220
     accacaaaat ctaaatataa acatttaata agactagttg cctaacttaa gaaaaataat      5280
     gtacagaata matagataac gattaaatat taagttaaga cacaacatgt atatatatca      5340
     tcccttaaga cttaagcacc aaaaactcac atagccgaag gccacagtag ccagcgctat      5400
     atcattaagc tagtctagtt ttgtaaactt ttctaccttt tataataata ataataataa      5460
     taataa                                                                 5466
//
ID   I-2_DF      repbase;    DNA;    INV; 4016 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4016
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 964-964 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4016 BP; 1605 A; 1059 C; 441 G; 894 T; 17 other;
     ccaccagaat atcaacctca tacggatctc aactcacaaa ggaccttaaa ctaaaaattt        60
     tccctaaaga taagtcaaac ccactgagta ctaactttaa acctactaaa tcgaaaacca       120
     aatcctctaa caaaaacaaa cataccacta acagcgacag tgaattgatt taaaagccac       180
     agatctcccc tactttaagg ttcaacctta gaacttctta cactaccaga atgtcactaa       240
     ttttaattca atggaacatc caaggatata caaataacta caataatctc cttatcctga       300
     ttaaaaaata ctctccacat atcatcactc ttcaagaaac acacatacaa tacactaaca       360
     atatacccac tcctataaat tacacactac taacaaacat agccaccaat agatttggcg       420
     gcgtagcact attagtacac aaatcaattc aatattctat agtaaacatt ccaaacgacc       480
     ttgaagctct agctatacac ataaaatcca agaagaacat gcacataaag acaacataca       540
     ttgccccaaa caaaaccgtc acaaacsaaa tgcttgaaga cactttgttc aataaccaaa       600
     caccatcact aattctagga gactttaacg gatggcacct tcctggggtt ccccgaaaac       660
     taattctcga ggaaaaacaa tacaacaatt tattgacaac acacagctaa tactactaaa       720
     tgacaaatcc cccacacatt tctcaacaca caacacatac atacacacat atcgaccttt       780
     cactttgctc agcaacactt gccccacaca ccaagtggga tmtacttaat gatctccacg       840
     gcagcgacca ttttccgata gtcatttctc tattccctcc aaacacgata aacaaatttt       900
     caaagccagt ttttatatta aaaaaagcca actgggagca ttacgagact ctcacacata       960
     aaaataacga aatattcccc acttcactaa acgtcaacaa agaagccgca caacttaaca      1020
     aaattatatt acatagcgca aacatttcca tcccacagac ctcagtaaat acaaagccct      1080
     acaaggttcc ctggtggaac aaaaaactag cacagttaaa aaaagagaaa caattagctt      1140
     ggaaaactct aaatcgcaac atcaacctta caaatgttat aaactacaga cgcttaaacg      1200
     ccaagtacag gttcgaaatt aaaaaaggaa aaacgaagct tccagctcct ttacatccac      1260
     catacaacca gaaactcctt catctaaaat atggagcaac ataaggcgct tctgcggtct      1320
     taacccaagc aaacaaattc acgccataca taatccccaa aacaacacaa caacaacaga      1380
     tactctcgaa atagccaact ccctctcaca acacttctca gagctctcaa gtgacctaaa      1440
     cttctcagac gaattccgaa ataacaaata taaaatcaac acaaccaatt atacaccaac      1500
     ctcaacagcc aaaactatcg aggaaaacat aactcacctt gaattaattg cagcactaca      1560
     aacacttaaa ggatccactc caggattaaa cagaatttcc tacgaaatga tacgcaacag      1620
     ctcccttacg acaaaaatca gaataaaaaa cctctttaac catattttcg acagccacat      1680
     acctcaagcc tacaaaataa gcttagtcat acctatactt aaaccaaaaa ctgacaaaac      1740
     taacatcgct tcgtacagac ccatttccct caactgctgt ctagcaaaaa cactagacaa      1800
     aataatagcg aaaagactat ggtggtttgt gacccacaac aaacttttaa atacaaacca      1860
     attcggcttt aaaaaaggca aatcgacttc ggatagtctc ctatacgtag accatctgat      1920
     aacgaagtcg aaaaggcaca cctccctcgt cactcttgac ttttcaagag cctttgatcg      1980
     agtaggtgtg cacactataa ttgatcaact ccaggaatgg aaggcaggcc caaaaataat      2040
     caattatgtc aaaaatttca tgctsaaacg taaaataatt gtcagagtcg gtccgcacat      2100
     gtcaaattca ctcccattat ccaacggtat cccacaagga tcacctatat cggtaatcct      2160
     atttctcatc gcatataata aactctcaaa cgcaatatct ttacacagag aaattaaatt      2220
     taacgcatac gccgatgatt tcttcatcat aataaatttc agaagcaaaa aagacctaaa      2280
     tttcaaccta gacaacttat tacatgacat aagcagctgg tgctcatact caggggcatc      2340
     tctatcctta actaaatgcc aacacctcca tatttgccaa aaacacaatt gcactagcac      2400
     cataagctgt agcaatacac caatacaaca agtgacagca ctcaaaatct tagggataac      2460
     cataaacagt aaatacaaat gggatacaca cataaaatca cttcttccat cactacacca      2520
     aaaattgaat ataataaaat gcctctccaa cctcaaattc aattgtaaca cacaaacact      2580
     actccacgtc gcgaaagcaa cagtcatagc aaaaatggaa tatggcctgt ttctatacgg      2640
     acaggctccg aaaagcgtgc taaacaaatt aaaaacaccc tttaacactg caatccgtct      2700
     agcccttggc gcctaccgaa ccacacccat aaacaaccta ctatacgaag ccaacatcct      2760
     cccattagag caaaaacgag accttcaaac agccaaactc acaaaaaacc ttattttttc      2820
     cagagataca ccaatacaca aacttgtcaa acaaagaaaa tcaaaaaaga acccatcaac      2880
     catagaccgc ataataaacc tttgtcaagc actaaaccta ccctacgaac cagttaaact      2940
     acacaaatac cagccacctt gggatctccc aaacctcata aacacaacat ttagagccca      3000
     caagaaacaa accacaccac cagatacata caggaaacta tacgaacata ccaaagacag      3060
     ctataaaaca cacaaattca tatttacgga cggatcaaaa atgaactcca ctatttcata      3120
     tgcaatcaca acagatactt atattattaa atacggaatc ctacccccat actcatcagt      3180
     actctccgca gaaataatag ccatattagt agcgatcgac caagtcaaaa gcacaagggg      3240
     aaagttcatg atctgctctg actctctctc agcaattgac gccataaaaa acacaaacaa      3300
     caacaatttt tactccaaca aaatcagatc acttctgaca aaactagccc caaaaatcaa      3360
     aatattgtgg atccctggca tgtaggcatt gcaggcgacc cccttattta caccccaaac      3420
     attaatttaa cagacataaa cagacaccta aaactagaat tcmtaacaag aaacaagcta      3480
     aacatagaac actgcgatca atggtacaaa aacattaaca aagactattc aaacatcgac      3540
     aattattgca gattcttcca tcccaaattg agcagactcg accaaattaa aataacacgc      3600
     cttagactag gccacacaaa actcacacac gagcactact ttaaccaaaa ccaaacctca      3660
     cactgcccct tctgccaags cgacaatacc ttaccccacc tattaaactc wtgcccatca      3720
     ctcctcccta ctaaamtatc tatcttcaaa aatacaaacc catcaaatct tcttaacgaa      3780
     ctcaaccctg amaacttaga aaaaatctta acmttcttaa aaacctcaaa cctataccac      3840
     aaaatctaaa aatacccaaa atgtaggtac ataaawaaaa agcctacaac kaacaacatg      3900
     taatwagcta atagacttaa ataamctcaa aagccgaagg ccttgctgcc agcgcttwac      3960
     catmtaagtt agtctagttt tgcaaacttc tcwatcttta awaataaaca aataaa          4016
//
ID   I-2_DK      repbase;    DNA;    INV; 4402 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4402
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1334-1334 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..380
FT                 /product="I-2_DK_1p"
FT                 /translation="LGKVDNRTAWSIYKKRHQHDGSLYSSVANTTQQRLNQ
FT                 LPRRGSNPISTPPPNTVSASASTSNRPPTPDDNRRNVIAYDDRDEAAMSTS
FT                 SVEEFENGNXKSTVNILPKNISKRTKRNIINKEKQIAQ"
FT   CDS           626..4150
FT                 /product="I-2_DK_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="NVLTTSIGAKGGVLVXKSVQHKSIPVGPTLDXIALEI
FT                 DAKQKINIFSIYISPSQTFTKTDXESTILNTSTPTLITGDFNGWNTLWGSP
FT                 KNNKRGXILEDYIQDKNFIILNNGQPTHFSTHSTSLTHLAFCSPNLSIHSD
FT                 FKIMDSPQGSDHFPITIKMFTQDRKIFKYSKKFFTNRADWEKFEKLSNILN
FT                 NQIPISTNTNKEHSNINKIILNSAYNSIPQSQPPKSQHNVPWWNKKLETLK
FT                 GIRNRAWRSFNKDMTQKNLIEYKKINAQYRREIRSSKRDSMQTLTSSISPE
FT                 SKPEKIWNKIRQFCGVHKLTNIHCIHDNHVNTSATNAVDIAAIFARHWSSL
FT                 SDDRNFSQEFLDAKQKVYRQNNNEHTHKAADFMEKQIEYLEFCVALNSLKG
FT                 HTPGNDKINYDMIQHTGKAVKIRIINFFNSILKSFIPQAFKISTIVPIHKP
FT                 GKNKTTIDAYRPISLNPCISKTLDKIISKRLWWFVTSNKLLNSRQVGFRKG
FT                 KSVSDCLLYVDALINRALSEKRHLSVISLDFERAFEKIGLHTIHNQLTKWG
FT                 CGPTILSYVTQFMTNRKIRVRVNQKYSLIHPLHNGIPQGSPLSVILFLIAF
FT                 NSLSDAISMHKNINFTAYADDFNIIIDLKKQKNPQINVDNLFEDIRNWCNK
FT                 SGASLSISKCKHIHVCRKINCSCQVSTHLNRIETVQELTILGLSFNSKYKF
FT                 NPHIQKLKKSLTKSTNIIKCLSNEKYNCQPLTLIEVVRSLCISKIDFGLPI
FT                 YGLAPKSTTKPIQTVLNNAIRAALGAFCSTPTYNLYIEANLSPVETRIKQL
FT                 QAKLSHTIIHARDTPLKPIIEKITKKKNRKFRNSALQKIIELCKKVDIPIN
FT                 PIKIQKIKKPPWHLKADAIDTRLSQHHKSNTNHAIFRQEFLQTKSELKNYT
FT                 FIYTDGSLNNDTIAYAITTENEILKQAILPPYSSVFTAEIVAILDAIEIGR
FT                 KIKGRTCICSDSLSAIDSIRNIDNPSYLPSKIRGLLNDLYPKIKILWVPSH
FT                 VGIKGNEFADDIAKNGTISPLITSPNINRSDINRYIKSIFSNSHLNLLQYS
FT                 SSWYQTINKNNYSINDYSKKPDIIKLPRKIQTKIIRLRLGHTRLTHNYRLL
FT                 QAITNTCQFCGNNTKSIEHILNECTAFQNHRTSIPNSNLTLLLSNPTTSNL
FT                 LKLHNFLKKTNLLHLL"
XX
SQ   Sequence 4402 BP; 1737 A; 1015 C; 591 G; 1050 T; 9 other;
     cgcttgggaa agttgacaac cgaacggcat ggtctatcta caagaaaagg catcaacatg        60
     acggctccct ctactcatcg gtggccaata ccacccagca gcgactcaac caactcccac       120
     gacgaggctc aaatccgatc tccacaccac caccaaacac agtctcggcg tcagcatcaa       180
     cctcaaaccg cccaccaaca ccagatgaca acagaagaaa cgtaatcgca tatgacgaca       240
     gggacgaggc agctatgtca acaagctctg ttgaagaatt tgaaaacggt aatagmaagt       300
     caacagttaa tatccttcca aagaatataa gcaagagaac caaaagaaat attataaata       360
     aagaaaaaca aatagctcaa taattactak atctaaactt aagaactctc ctattacaga       420
     tttggtaaat aactaaaaca ttaaaaagac accctctatc tacttaacac atgtcactta       480
     ctatattgca atggaacatt aatggttact taaataatta taatgaacta ttattgcttt       540
     taaaatcaca gaaaccaaac attatatccc tccaagaaac gcacataaca cccaccaaac       600
     cattccccat cccagttaat tttgaaatgt actcactaca tctattggcg ctaagggagg       660
     agtactggtc canaaatcag ttcagcacaa gtccatccct gtaggaccaa cattggattn       720
     natcgcactc gaaatagatg caaaacaaaa aattaatatt ttttccatat acatatcacc       780
     ctcacaaaca tttaccaaga ccgatntaga gagcactatt cttaacacat ctacacctac       840
     attaatcaca ggagacttta acggatggaa taccctttgg ggatcgccca agaacaataa       900
     aaggggaaaw atcttagaag attacattca agacaaaaat ttcataattc taaacaatgg       960
     ccaaccaaca catttttcca ctcatagtac atcactcaca caccttgcat tctgttcacc      1020
     aaacctcagt atacactccg attttaaaat catggattcg cctcagggwa gtgatcactt      1080
     ccccataaca ataaaaatgt tcacccaaga cagaaaaata tttaaatatt caaaaaaatt      1140
     ctttacaaac agagcagact gggaaaaatt cgaaaaactt tcaaacatcc ttaataacca      1200
     aattccaata tcaactaaca caaataaaga acacagtaac attaataaaa taatactaaa      1260
     tagcgcttat aatagtatcc ctcagtccca gcccccaaaa agccaacata atgtcccatg      1320
     gtggaacaaa aaattagaaa cattaaaagg tattagaaac cgagcctgga gatcctttaa      1380
     taaagacatg acccaaaaaa acttaataga atataaaaaa attaatgctc aatacagaag      1440
     agaaatccga tccagcaaaa gagatagcat gcaaacactt acatcaagta tatcaccaga      1500
     atccaaaccc gaaaagattt ggaataaaat cagacaattc tgtggcgttc acaaattaac      1560
     aaatatccac tgtatacacg acaaccatgt aaatacatca gctacaaacg cagtagatat      1620
     tgctgccata ttcgctagac attggtcatc tctttccgat gacagaaact tctcccagga      1680
     attcttagat gccaaacaga aagtttacag acaaaacaat aatgaacaca cacataaggc      1740
     agctgatttt atggaaaaac aaattgaata tctagaattc tgcgtagctc taaacagcct      1800
     aaaaggacac acccctggga atgacaaaat caactatgac atgatacagc atacagggaa      1860
     agcggtaaaa ataagaataa ttaacttttt caactctata ctaaaatcat ttatccccca      1920
     agcttttaaa atcagtacaa tagtcccaat ccataaacct ggaaaaaaca aaacgaccat      1980
     agacgcatat agaccaatta gcctcaaccc atgcatttct aaaacgcttg acaaaatcat      2040
     ttccaaacga ctgtggtggt ttgttacttc taacaaactc cttaacagtc gtcaggtagg      2100
     ttttagaaag gggaaatctg tgtcagactg tctactatat gtagacgctc taatcaacag      2160
     ggccctctct gaaaaacgac acttgtcagt aatatctcta gatttcgaaa gggcttttga      2220
     gaagatagga ctacacacaa tacacaacca acttactaaa tggggctgcg ggccaacgat      2280
     actaagctat gtaacacaat ttatgactaa ccggaaaatc agagttagag ttaaccaaaa      2340
     atactcttta attcaccccc tccataatgg aatcccacag gggtctccat tgtctgtgat      2400
     tctattcctc attgccttta acagcctatc agacgcaata agcatgcaca aaaacattaa      2460
     cttcactgca tacgccgatg atttcaacat aattattgac ttaaaaaaac aaaagaatcc      2520
     acagataaat gttgacaatc ttttcgagga cataaggaac tggtgtaata aatcaggagc      2580
     gtctctctcc atttcgaaat gcaaacatat acacgtatgc agaaagataa actgtagctg      2640
     ccaagtatct acccatctta acagaataga gacagtacag gaacttacaa tattaggcct      2700
     atcatttaac tcaaaataca aatttaaccc tcacatacaa aaacttaaaa aatcccttac      2760
     taagtcgacc aacattataa aatgcctctc aaatgagaaa tataattgcc agccactcac      2820
     gctcattgaa gtcgttagaa gtttgtgtat ctcaaaaata gattttgggc ttccaatata      2880
     cggattagca ccgaaatcaa ccacaaaacc aatacaaacc gtattgaaca atgcgatccg      2940
     agcagcgtta ggtgccttct gttcgacacc cacgtataat ctgtacattg aagcaaacct      3000
     atccccggta gaaaccagga taaaacagct tcaagccaaa ctttctcata caattataca      3060
     cgctagggac actccactaa aaccaataat agaaaagata acaaaaaaga aaaaccggaa      3120
     atttagaaac tcagcacttc aaaaaattat agagttatgc aaaaaagttg acattcccat      3180
     aaacccaata aaaatacaaa agataaaaaa gcctccatgg cacctaaaag cggatgccat      3240
     agacacacgc ttaagtcaac atcacaaatc aaacacaaac catgcaatat ttagacaaga      3300
     atttctgcag accaaatctg aacttaaaaa ctacacattt atatacactg acggatcact      3360
     kaacaacgac acaattgcat acgcaataac cacggaaaac gaaatattaa aacaggccat      3420
     tctcccaccc tactcatctg tcttcacagc agaaattgtt gctatattgg acgccattga      3480
     gattggacgg aaaataaaag gaagaacgtg catctgctcc gactccttat cagcaattga      3540
     ctccattcga aacattgaca atccatcgta cctcccctcg aaaatcagag gactattaaa      3600
     tgacttgtat ccaaaaataa aaatcttgtg ggttccgagc cacgtcggaa tcaagggcaa      3660
     tgagttcgct gatgacatcg caaaaaatgg aacaatctca cctttgatca catctcctaa      3720
     catcaaccgc tcagatatca acagatacat aaaatcaatc ttctctaaca gccatctcaa      3780
     tctcctacag tactcttcta gttggtacca aaccataaac aaaaacaact acagtattaa      3840
     cgattattca aaaaaaccag acattatcaa actccccaga aaaattcaaa ccaaaattat      3900
     tcgattacgc ctcggacaca ctcggcttac acacaactac agactattgc aggccataac      3960
     caatacctgc caattctgcg gcaacaacac aaagtcaata gaacatattt taaatgaatg      4020
     tacagcattt caaaatcaca gaacctctat tcctaattca aaccttaccc tgcttctctc      4080
     caatcctaca acgagcaacc tcctcaaact tcacaatttt cttaaaaaaa caaacctcct      4140
     acacctctta taaaataaaa tcaatactta agataacata aatttaacca aaaatcaaaa      4200
     cttatacgtt aagagaaaaa ctttgaatta taatatttgt taaaatagaa taataagaat      4260
     caaacctcat agattttaag agaaaacttt gaatgaaatc cctaaatcca gtcagcctaa      4320
     agcctaagta gctatggctg ccccccatct gttgctttag tttataactt taagcaaaca      4380
     gaatgtaaat aaataaataa at                                               4402
//
ID   I-2_DSuz    repbase;    DNA;    INV; 5355 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5355
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 610-610 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1429
FT                 /product="I-2_DSuz_1p"
FT                 /translation="MPPGPPNLGENRFAVLSESPKTKKKKRPYQKFSEEFP
FT                 ELPETVQKNPKFIIITAKNSTKTISEFSCFAVHRALNIISKEIISISTLRD
FT                 GNLLILVKTKDVAEKFLKTDRLHGICEIEAKYHEALNFVKGTIYAPYLNNI
FT                 PEAEIKAELKSQNVHDVFKFTRTNEGVIKPTGVILVTFDLYNLPSKLDICW
FT                 HTVKVREYIPNPMRCKNCQKLGHTAKFCKNTAMCCTCNLPPHAPTTCTRTE
FT                 CANCADKHPASSPVCPSYQQQKEILRIKTSKKCSMREAKIIHKQQQQTLSP
FT                 KITSATFATVVAPQQPSTTPTTTATLQQNKQTISNQTTAAASKAQEISAVP
FT                 APSPSPSSSPSTRPSIPSRTSPSPPTTSTRKSYDLIKQSRALNKEVRDFLN
FT                 ETDQLSSPKYPLDSDHSESQTKNTISESDSSMDQDF"
FT   CDS           2042..5170
FT                 /product="I-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MYLSFLHDWHIFRNGQFSNSPHGSDHFPIQIVLCLNP
FT                 SPDSSPPLPKYKTDLANWKLFEXECANFPLQWKPNSINHQVAQVTKCIRAA
FT                 ANRSIPQTKCIRHKAKVPWWNSTLQELRNEKQALFYTFKSNLTTSNLLNYK
FT                 KSNSRFKRAVLTAKRSCLEKFTSRISPLSSSKKIWSDVKRLAGVPPTPIKC
FT                 LKTVAGFVTSECQIAEEFGNTWSNYSADCNFSRNYVDQKQSYVNSIYQPNS
FT                 ICNAAKQLEQKFSLLEMELAIRTSKGKCPGYDRISYAVLKNIPPTLKEKVL
FT                 EIFNLTLVTGSYPHVWKSATVIPIPKPKKSDHSTNSFRPISLLSCLGKIIE
FT                 KMIARRLMWFITQKNRISHYQVAFKRSHSTMDALLRFQHFTSKALSTKNHV
FT                 SVLATDFEKAFDRVGLHSVLHQLELWGVGPRLYNLIKAFMTNRTFRVRVNN
FT                 STSKLHKLHNGIPQGSPLSVLLFMVAFEQITSIFNRHKDISISLYADDAFI
FT                 FTKKKDLDSVKETFSEVLEELEQWGTSSGASLSIEKCQVLHICRKHNCNFP
FT                 EIVFRNKSISYTENLKILGITFDSRFTFKTHCLILRKQLESRLNIIKFLSS
FT                 KYSHVHINTLINITRALMLSKIDYGLPIFGWCAATHIKKIQPPYHGAARRS
FT                 IYAFPTSPIKCILAESGLPSIPTRVKETTTRLIPKLYTTPNRLLADDFKST
FT                 FKDRRKYKCLSTLRICANFSKELDLPPPNRFKPPGPFPPWSRKQPIINTNL
FT                 RISSKCHTPSSVYRTRFQSEKERLGGKHWLYTDGSKTSESTSFAVVDANNS
FT                 IIAGGGLPLYNSIFIAEATAILLACRFAIDHKGKFVVCTDSLSSLLAINNP
FT                 EYRDPTIQEIQRIGKQYSTKITFFWVPSHQGIRGNEDADLAAHNMGRSPTF
FT                 IFTPINCNDIHNLTYNHLETQKMLEWNSFNHRYRSFNPTCTKIHLPAATGR
FT                 PQCSTFIRLRIGHTQQTHEHLLKGQNNPICSLCGGLPTIDHLLNDCPGLSS
FT                 LRSYFFGPQLPTQTLECPSAENIKXMHEFIKKAKLSI"
XX
SQ   Sequence 5355 BP; 1727 A; 1441 C; 889 G; 1295 T; 3 other;
     cagtcaccga ctacctctca tcgagtgcgg acgtctgtaa cttttctccc ggcagttcta        60
     ttcgtgcgag ttacgatcaa attttttctt atctctaacg aacacccgaa ctccacctaa       120
     cagcaagcaa atagtgacca tgccccccgg gccccccaat ctgggggaaa accgctttgc       180
     tgtcctcagt gaaagcccaa aaaccaaaaa gaaaaaacga ccatatcaaa agttttccga       240
     ggaattccca gaactcccag aaactgtgca aaagaaccca aagttcatca tcataaccgc       300
     aaaaaactca accaaaacca tttccgaatt ttcctgtttc gctgttcatc gagcactcaa       360
     catcatcagc aaagagataa tctcaatttc caccctcaga gacgggaatc tgctgattct       420
     ggttaaaacc aaagatgtag ccgaaaaatt tctaaaaacc gatcgtctac acggtatttg       480
     cgaaattgaa gctaagtacc acgaagcact taactttgtt aaggggacca tctatgcgcc       540
     ttacttaaac aacattcccg aagctgagat aaaggccgaa ttgaaatccc agaacgtcca       600
     tgacgtattt aaattcaccc ggacaaatga aggggtcatc aagcccactg gcgtgatctt       660
     ggtaaccttt gatttataca accttccgag caaactggac atttgttggc acacagtcaa       720
     ggttagggaa tatataccca atccaatgag gtgcaaaaac tgccaaaaac ttggacatac       780
     ggcaaaattc tgtaaaaaca ctgccatgtg ctgtacctgt aacctccccc ctcacgcacc       840
     tacaacatgc accagaactg agtgcgcaaa ctgcgctgat aagcaccctg cctcttcacc       900
     cgtctgcccg tcatatcaac agcaaaaaga aatactccga atcaaaactt caaagaaatg       960
     cagcatgcgc gaagccaaaa tcatccacaa gcagcaacaa caaaccttat cgccaaaaat      1020
     aacttcggcc accttcgcga ccgtcgtcgc tccacaacaa ccatcgacaa caccaacgac      1080
     aacagcaacg ctccaacaaa acaagcagac catcagcaac cagacaaccg cagcagcatc      1140
     caaagcgcaa gaaatttctg ccgttccggc accctccccc tctccctcct cctccccttc      1200
     caccagacct tcaattcctt cccgcacctc cccctctcct cccacaacct ccacccgaaa      1260
     atcgtatgat ttgatcaagc agtctcgagc tctcaacaaa gaagtgcgag actttctaaa      1320
     tgaaacagat caattaagtt cccctaaata tcccttagat tcagatcact ctgaatccca      1380
     aacaaaaaac acaataagcg agtctgattc ttctatggat caagactttt aaaaacatct      1440
     gaactatgaa atgaaatggt aaacgtaaaa cataatcttt ctatcctcta tgcctgtcaa      1500
     aattcttcaa tggaacataa atggtatttt caacaactac aatgaactta cactaatcct      1560
     aaacgacctc tcccccgatg ttttatgcct gcaagaaacc cacttgcccc ataacttcca      1620
     aaacttcatc tgcccaaaag cctatgttgg ctattttcac aacctttcac aaaataccac      1680
     aagcaagcaa ggtattggtg tgctcataaa gcagcatatt cctcacacct acaaagcaat      1740
     aaatacaaat attcttagca cggcccttca actcagtctt gataggcaat tactattata      1800
     aatatataca ttcccccttc tcaggcattc accagcagcg acattttaaa tataagaaat      1860
     cagttcacgg gtccccttct aatgttaggt gactttaatg catggagccc actatggggt      1920
     tcgcctgtat ccaatgggcg tggcaaagcc ttagagcggg ccatagtcga ttccaatatg      1980
     atcaccttaa acgatggctc agcaacccac atttccaccc ataacacact cacacatgta      2040
     gatgtatctt tcatttctcc acgactggca catatttcgg aatggtcagt tttcaaattc      2100
     tccacatggc agtgatcact ttcccattca aattgttctg tgtctgaacc ccagtccaga      2160
     cagttcccct cctttgccaa aatataaaac cgatctagca aactggaaac tattcgagag      2220
     kgaatgtgcc aactttcctc tacagtggaa accaaactcc attaaccacc aagtcgctca      2280
     agtaaccaaa tgcatccgtg ccgcggccaa tcgcagtatt ccgcaaacca agtgtatacg      2340
     gcacaaagcc aaagttccct ggtggaatag cacccttcag gagcttagaa atgaaaaaca      2400
     agctttgttc tacactttca agtccaactt gaccacttca aacctcttga attacaagaa      2460
     atccaattct cggttcaaaa gggccgtcct gactgctaag cgatcctgcc tggaaaaatt      2520
     tacctcacga atctcgcccc tgtccagctc aaaaaagata tggtccgatg taaagcgcct      2580
     agcgggagtg cctcccaccc caataaagtg cctaaaaacc gtagctgggt ttgttaccag      2640
     tgagtgtcaa atagctgagg aatttggtaa tacctggtca aattactctg cagactgtaa      2700
     tttctctcgg aattacgtcg atcaaaaaca aagctacgta aacagcatat accaaccaaa      2760
     ctcaatatgc aatgctgcga agcaacttga gcaaaaattc agtctcttgg aaatggaact      2820
     tgccattcga acttccaaag ggaaatgtcc tgggtacgac agaatatcgt atgcagtgct      2880
     gaaaaatatt ccccccaccc ttaaggaaaa ggtccttgaa atcttcaacc tcactcttgt      2940
     cactggttcc tacccacacg tctggaaatc agccacagta atccctatcc cgaagccaaa      3000
     gaaatctgac cacagcacaa acagtttccg tcccatctcg ctcctctcct gccttgggaa      3060
     aataatagaa aaaatgatag ctcgtagact catgtggttt atcacccaaa aaaaccgaat      3120
     ctctcactac caagtggcat ttaaaaggag ccactctacc atggacgctc tgctgagatt      3180
     tcaacacttc acgtcgaagg ccctttctac aaaaaatcac gtatccgttc tggctacgga      3240
     ttttgaaaag gctttcgacc gcgtagggtt acattcagtg ttacaccaac ttgaactctg      3300
     gggtgttggt ccaaggcttt ataaccttat caaagccttt atgaccaata gaacttttag      3360
     ggtccgagtt aacaactcaa cctctaaact acacaagctc cacaacggta tacctcaggg      3420
     ttccccttta tcggtgttgc tctttatggt tgcctttgag caaatcacct ccatctttaa      3480
     caggcataaa gatatatcca tctcgctgta tgcggacgat gcctttattt ttaccaaaaa      3540
     aaaagatctc gattctgtca aggaaacttt ctctgaagtt ttggaagagc tggagcaatg      3600
     gggtacttca tccggggctt cactctccat agaaaaatgc caggtcctac atatatgtcg      3660
     taagcacaat tgtaactttc ccgaaattgt attcaggaac aaaagtataa gctatacgga      3720
     gaatctgaaa attttaggga ttaccttcga ctctaggttt acatttaaaa cacactgctt      3780
     aatattacga aaacagctag aatctcgcct aaatataatt aaatttctta gctctaagta      3840
     ttctcatgta catattaata ctcttataaa cataaccaga gcattaatgc tctccaaaat      3900
     agactacggt ctcccgatct tcggctggtg cgcagccaca catatcaaga aaattcaacc      3960
     accataccat ggagctgcac gcagatcaat ctacgcgttt cctacgtcac ctataaagtg      4020
     catacttgcg gaatcaggac tacccagcat ccccacaagg gtaaaagaaa caaccacccg      4080
     gctaattcca aaattgtaca ccaccccaaa tcggttactg gctgacgact tcaagagcac      4140
     tttcaaggat agaaggaagt ataaatgcct ttctactctc cgaatatgcg ccaacttcag      4200
     caaagaattg gatctacccc caccgaaccg cttcaagccg cccgggccat ttccaccctg      4260
     gtctcggaaa caaccgatta taaacaccaa cctgcgtatc tcaagcaagt gtcacactcc      4320
     tagctcagta tatcgcaccc gatttcaaag cgaaaaagag cgcctcgggg gaaaacattg      4380
     gctgtatacc gacggatcca aaacatcgga atcaacctca ttcgcggttg tagacgctaa      4440
     caactccatc atagcggggg gaggccttcc cctttacaat tccatattca ttgcagaagc      4500
     cactgctata ttattagcct gccgctttgc aatcgatcac aaggggaaat ttgttgtctg      4560
     cacagacagc ctctcttctc tgctagcaat aaataacccc gagtatcgcg accccaccat      4620
     acaggagata caaaggatag gcaaacagta ttccacaaaa attacattct tctgggtccc      4680
     tagccatcag ggcatacgag gaaacgaaga cgcagacctg gctgcccaca atatgggccg      4740
     ctcaccaacc ttcatcttta cacccattaa ttgcaacgat atacacaacc ttacatataa      4800
     ccacttggaa acccaaaaga tgctggaatg gaatagtttc aaccataggt acaggagttt      4860
     taatcctaca tgcaccaaaa tacatcttcc agctgcgacc ggtagacccc agtgcagcac      4920
     ttttatccgg cttcgaatag gacacactca acaaacacac gagcacctat taaaaggcca      4980
     aaataatcca atttgtagtc tctgcggtgg acttccgacc attgaccacc tactaaatga      5040
     ttgtcccggt ctgtctagcc tcagatcata cttctttggg ccccagctac ccacacaaac      5100
     cttagaatgc ccatccgcag aaaacatcaa aawaatgcac gaattcatta aaaaagcaaa      5160
     gctctcaata taaaagttaa gttaaaatat gaaaaacaaa tgtatatatt atatataaat      5220
     aaaaccataa taaatacata gaacaaatka atcacaacca gagtcgaagg ccaccgcagc      5280
     cagtgctcgg tatttttgca attaagttag tcattgtatg cttagcttaa tttgttaaat      5340
     aaataaataa ataaa                                                       5355
//
ID   I-2_DTa     repbase;    DNA;    INV; 5223 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5223
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5924-5924 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1390
FT                 /product="I-2_DTa_1p"
FT                 /translation="MMGDPPDRGPPPSHSNNLELLETIGPKYMTIARSDQN
FT                 LDLSNISPFLIKKQIDFTCSGEVDECKKLRNGTLLIKTKTNIQAKRLLQLK
FT                 AFADIAVNVQIHNSLNFSKGVIYSNDIRGIDVDIIKRELASQRVHDVKKIL
FT                 RRQNGILTETGLVILTFNTLTLPEYIMIGYQKTNVREYIPLPLRCNKCFKY
FT                 NHISNACRNNKLCYNCGEEYHLDPNTNDKCTRPAHCVNCKEDQTAEPHNSV
FT                 NRRCPIFRTQQELTAIKTTKKCDNKTALSILRSRNTATTPHSYASITKTTQ
FT                 QQPTTLTNHTTLTNHTTQQNSGPQHLKGPDLTQQRLTRSRTTPTSYADLTT
FT                 THSNLDNLKPTQPPKPTPSTVQILPLTTSKRTIANLKAAAKATTKKTKKNP
FT                 TTPENASSDSCDMEIN"
FT   CDS           1414..5094
FT                 /product="I-2_DTa_2p"
FT                 /translation="SRLMLKIIQWNIKGYKNNYQELQILLKQFNPHIIALQ
FT                 ETHISLTESLPTPVNFSLFCSQNTNAFGGTALLVHNSISHTQHQLTPEFEA
FT                 IAIQIDSKTKFTLISTYISPNKQFRSNNLLNVFSPTNLPTIVLGDFNSWHP
FT                 YWGSPRANSRGNIVAKFIDRSDYILLNDKSPTHYSTHNTFTHIDLSLATAD
FT                 IAPEITWKVIDDLHGSDHFPILITMFPNTSSPSFVAKPSFNLNKADWTLYA
FT                 NTITQLCSSTQPCNSNVNKEAALIKKTLIQSAHIAIPQNTTFSLKHTVPWW
FT                 NQELTKLKNTKNNKFKLLKRNINTINMLEFKKANAKFRRAIKEAKKTSLYN
FT                 FTSEINPNSDPSKMWANIKRLCGLYPSKHIHAIHSPLTQTTSTCPSEIANT
FT                 FGDLWSKEADDSNFSDTFRTNKNLTNNYIYHEPCDSATQIEGNISFIEFLS
FT                 ALNSLKGSTPGMDRISYSMIQNAPPSFKIRILNHFNYILDSHIPQAYKVSL
FT                 ILPILKPQKPQIEPNSYRPISLNPCLAKVLDKIIAKRLWWFVITNKLIHNN
FT                 QFGFKRGKSVLDSLLYVDHLATRSLSLKRHLSIVSLDFSKAFDKIGIHTII
FT                 QQLQEWKLGPRIIKYVANFMTNRKIIVKNGRNMSNSFPLSNGIPQGSPISV
FT                 ILFLISYNSLTNIIARPRQIQFTAYADDFHLIIQHKRTKNPTVVLTSLFQA
FT                 IKNWCSYSGASLSVDKCQSLHICRKHNCKSKIRTGSINIPDSNNTTILGLT
FT                 LNNRYNWTTHINKLKTKLSKPLNIIKHLSSPKHNTNTSTLIQITKSILISK
FT                 LDYCLPIYGNAPTHLINKLKTTIHCAIRAALGAFRTTPTSNLLVEANIGSF
FT                 DHRINLLTGKLSKKLIHSFDTPLKTLTKTSKKKFKYPSTIDRIINICKELH
FT                 LPFSPIKNYHNKKYDMEIINKATNTTLSNYNKANTPPSIYKQLFESLKNTI
FT                 PFHNIFYTDGSMANGIISYSVTKETYPIKAGLLPHYSSVLSSELIAIHEAV
FT                 KLALKTPGKHAICSDSLSALKSIINSNNHSYYPSSIRNLIINHFPKIILIW
FT                 IPSHIGIVGNENADNTAKEAQQFPLIYTPNNNSNDISHFLKNHNKSKLSDI
FT                 LNNVSPWYKKILHSSPQTIVNISPNQSRKAQILINRLRLGHTKLTNAHYID
FT                 RSLSNTCPFCNNSTISLNHIIISCPSLSQHRRDIFNSENPIHFIANPTNVN
FT                 INKIISFLRITNLAHTI"
XX
SQ   Sequence 5223 BP; 1893 A; 1482 C; 623 G; 1225 T; 0 other;
     cagtcgcaaa ctcactctca tagagatcag tcgtgccttt ctatcatcgt ctcaaatcca        60
     aagcttatct tacaagccac aacaacaatt cgtaaaccca acggtaactg caagtgcaag       120
     aagtgcaagt gccaaacata acctacgcgc catacgtagc atgatgggag acccacccga       180
     ccggggtcca cctcctagcc atagcaataa cttggaactc ttagaaacta tcggccctaa       240
     atacatgacc atagctagat cagatcaaaa tctcgatcta agcaacatct caccattctt       300
     gatcaagaag caaattgatt ttacctgcag tggtgaagtt gatgaatgta aaaaactcag       360
     aaacggaacc ctattaatta aaacaaaaac aaacattcaa gcaaagagac tactccaact       420
     caaagctttt gccgatatag ccgtaaacgt acaaatccac aactctctta atttttccaa       480
     gggagtcata tacagtaatg acattagagg tatcgacgtt gacataataa aaagagaact       540
     agcttctcag cgagtccacg atgttaagaa aatacttagg agacaaaacg gtattctcac       600
     agaaaccggc ctcgtaattc tcacctttaa cactcttact ctcccggaat atattatgat       660
     cggttaccag aaaacaaatg ttagggaata cattccctta cccctcagat gcaataagtg       720
     ctttaagtat aaccacatca gcaatgcatg cagaaacaac aaactttgtt acaactgcgg       780
     tgaagaatat cacttagacc caaacactaa cgacaaatgc acaagaccag cacattgcgt       840
     aaactgcaaa gaggaccaaa ccgccgaacc acacaactct gttaaccgta gatgccccat       900
     atttagaaca caacaggaac tcacagcaat taaaactaca aaaaaatgcg acaataaaac       960
     tgctctctct atcctacgat cccgtaacac cgccaccaca ccacactcat acgcatcaat      1020
     aactaaaact acccagcaac aaccaactac gctcacaaac catacaacgc tcacaaacca      1080
     tacaacacaa caaaactctg gacctcaaca tctcaaagga cccgatctta ctcaacaacg      1140
     actaactaga tccaggacta cgccaacatc ttatgcagac ctcacaacca cacatagtaa      1200
     cttagataat ctaaaaccaa cccaaccccc taaaccaacc cccagcactg tacaaatcct      1260
     accgcttacc acatccaaac gcacgatcgc aaacctcaag gcagcagcca aagccaccac      1320
     aaaaaaaacc aaaaaaaacc caactacgcc tgagaatgct tctagcgact catgcgatat      1380
     ggaaattaat taaacaccaa tcacccttac taatctagat taatgctaaa aataattcaa      1440
     tggaacataa aaggatacaa gaataactac caagaacttc aaatactcct caaacaattt      1500
     aacccacata taattgccct acaagaaacc catatatctc tcacagaatc tctacctacc      1560
     cctgtaaact tttctctttt ctgcagccaa aacactaatg cattcggtgg cacagcgctt      1620
     ctggtgcata attctatctc tcacacccaa caccaactga ccccagagtt tgaagctatc      1680
     gccattcaga tagattccaa aactaaattt acactaattt ccacatacat ctctcccaac      1740
     aaacaatttc gctcaaacaa cttactaaac gtcttttctc ctacaaacct acccactata      1800
     gtcctaggtg acttcaacag ctggcaccca tattggggtt cccccagagc caactctaga      1860
     ggcaacattg ttgccaaatt tatagaccgt tcagactaca tactccttaa cgacaaatct      1920
     ccaacacact attccacaca caacacattt acacacatag acctctctct tgccactgcc      1980
     gacatagcgc ctgaaataac gtggaaagtg atcgatgatc ttcacggaag cgatcatttt      2040
     cccatcctta taactatgtt cccaaacact tcctctccat cctttgtcgc caaaccatcc      2100
     tttaacctga acaaagcaga ctggactcta tatgcaaaca ccattacgca actatgttcc      2160
     tctacacaac cttgcaacag caacgttaat aaagaagccg cacttattaa aaaaacactt      2220
     atacaatctg ctcacatagc tattccacaa aacacaacct tttccctcaa acacactgtt      2280
     ccctggtgga atcaggaact tacaaagcta aaaaatacaa aaaacaataa atttaaactt      2340
     cttaaaagga acataaatac gataaacatg ctagaattca aaaaagcaaa cgcaaaattt      2400
     agaagagcta ttaaagaagc taaaaaaaca tcattataca acttcacttc tgaaattaac      2460
     cctaactctg acccatcgaa aatgtgggcc aacattaaac gattatgcgg cctctaccct      2520
     tctaaacata tccatgccat acatagcccc ctaacgcaaa ccacttctac atgtccctca      2580
     gaaatagcca acaccttcgg cgacctatgg tcaaaagaag ctgatgactc aaacttctcc      2640
     gacacattta gaacgaacaa aaacctcaca aacaattata tttatcacga accttgtgat      2700
     tcagccactc aaatagaagg caacatttcc tttatagaat ttctatccgc actcaactcc      2760
     ctaaaaggct ccacacctgg catggaccgg atatcctatt ccatgatcca gaatgcgcct      2820
     ccctccttta aaatcagaat tcttaaccat tttaactata ttctagattc ccacatccct      2880
     caagcctaca aagtcagcct catacttccc atcctcaagc cacaaaaacc acaaatcgaa      2940
     ccaaattcat atagaccaat ttccctaaac ccatgtcttg ctaaagtctt agacaaaatc      3000
     attgctaaaa ggttgtggtg gtttgttatc actaacaaac tcattcacaa caaccagttt      3060
     gggtttaaaa gaggaaaatc tgttctagac agtctactat acgtagacca cctagcaaca      3120
     agatcccttt ccttaaaacg ccacctatcg attgtttccc tggacttttc caaggcgttc      3180
     gacaaaattg gtatccacac tatcatccaa caacttcaag aatggaagct aggcccccga      3240
     atcatcaaat acgtagctaa tttcatgaca aaccggaaaa ttattgtcaa aaacggtcga      3300
     aatatgtcca acagttttcc tctcagcaac ggcatcccac aaggttctcc catctcagtc      3360
     attctatttc taatatctta caactcccta acaaatatta tcgcccgccc gaggcaaatc      3420
     caattcacgg cttacgccga cgatttccac cttatcatcc aacacaaaag aacgaaaaat      3480
     cccaccgtag ttctcacttc cctcttccag gcaattaaaa actggtgctc ctactcagga      3540
     gcctccttat cggttgataa atgtcaaagt cttcatatct gccgcaaaca caattgcaaa      3600
     tcaaaaattc gaaccggctc cattaacatt ccggattcca acaataccac aattcttggc      3660
     ctcactctaa acaatagata caattggaca acccacataa ataaattaaa aaccaaactc      3720
     agcaagccct taaacattat caaacacctt tccagtccca aacacaacac caacacatcc      3780
     acgcttatcc aaataactaa atccatcctc atctccaaac tggactactg ccttcccata      3840
     tacgggaacg cccctaccca ccttataaac aaattaaaaa caacaataca ctgcgcaatc      3900
     agagcagcac taggtgcttt caggactact ccaacgagca acttgctagt agaagccaat      3960
     ataggctctt tcgaccaccg tataaatctc ctaacaggca aactatcgaa gaaactcata      4020
     cactcatttg acacccccct taaaaccctg actaaaacct caaaaaagaa atttaaatac      4080
     cctagcacaa tagaccgaat aattaacata tgtaaggaac ttcaccttcc cttcagtcca      4140
     attaaaaact atcataacaa aaagtacgac atggaaatta taaataaagc caccaacaca      4200
     acactatcca actataataa agcaaacacg cccccctcaa tctataaaca acttttcgag      4260
     tccttaaaaa acaccatccc ctttcacaac atattctaca ccgacggctc tatggccaat      4320
     ggtataatta gttacagtgt aaccaaagaa acctatccca tcaaagctgg actccttccc      4380
     cactattcat ccgttctctc aagtgaactt atagccatcc acgaagccgt aaaacttgca      4440
     ttgaaaaccc caggcaaaca tgctatctgt tctgactccc tctctgctct aaagtcaatc      4500
     attaactcca acaaccactc ctattatccc tcatctataa gaaaccttat cataaaccac      4560
     ttcccaaaaa tcatactaat ttggatcccc agccacatcg gcatagtagg taatgagaat      4620
     gctgataata cagctaaaga ggcccaacaa tttccgctca tctacacccc aaacaacaac      4680
     tccaacgaca tctctcactt cctaaaaaac cacaacaaat ctaaactatc ggacatacta      4740
     aacaacgttt ccccttggta caaaaaaatt cttcattctt cccctcaaac catcgttaac      4800
     atatccccca accaatctag gaaagctcaa atcctcatta accgactcag gttaggacac      4860
     accaagctca caaatgctca ctacatagat aggtcacttt caaatacgtg cccgttctgc      4920
     aacaactcga caattagcct aaaccacata ataatcagct gtccctcact atcccaacac      4980
     agaagagata tctttaactc cgaaaacccc attcacttca ttgcaaaccc tactaacgtc      5040
     aacatcaaca aaatcatctc gttcctccgt ataactaatt tagcacatac tatctaagaa      5100
     aactgtccct taataaaata ttcagtcgag ccgaaagcct tagttgctag cgctctaaaa      5160
     atccccagtt agctcatagt tttaactgta agttagcttt atataaataa ataaataaat      5220
     aaa                                                                    5223
//
ID   I-2_DVi     repbase;    DNA;    INV; 5501 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5501
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1941-1941 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1594
FT                 /product="I-2_DVi_1p"
FT                 /translation="MHEPPDIRTHGLKSNNTNLGEPKYITIKRNDDNTFEN
FT                 VSPFVIKKTIDFACDGEVETCKKTKDGSLLIKTKNKLQAIKLLRLKLMTNI
FT                 EITATEHKTLNSTKGVIYCNELRGIAENEILMELKTQHVTEVRKILKKPPT
FT                 NTNSDENNTMLIETGLIIITFGTLNLPEKIRIGYETVRVRPYIPLPLRCRK
FT                 CLRFGHPTPVCKGIETCINCSNAKHTNENELCKNEKNCLNCSNNPDIDHQH
FT                 SPLDRKCPAFLKQQELTAIKITEKTDHKTALNIYNNRHGQHVRTSYAKTLT
FT                 NTTQHSTITQAPNKPNTHTPTNTSPITQLTPLTKTTHQTISAALHAHSRLN
FT                 AASYTTSSTKTPPAPSPTSAQQPNSIEPEPEDMDTDITHHTKATNKPYTSH
FT                 LTEDLKIKLYAKDKSNNLSTTLKTTKPNTKTKSKTQTKTNTQTTGSDYIKK
FT                 KKKTXFNLTLHLNLNLNQTKPITLIT"
FT   CDS           1645..5346
FT                 /product="I-2_DVi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSKMSLIILQWNIKGYTNNYSELSTIIKKYSPQVICL
FT                 QETHYYNTNTPIPVPINYQIYTNTASNRFGGVAVLVHKSVQHTQLNQPRPL
FT                 ETLGIEIMSKTKIRIFSTYIPPNKTFSLKCLSDQFETHNTNTNQIILGDFN
FT                 SWHHSWGSHQDNRRGRILSKFIQNANLTILNDGSPTHFSTHNTLTHIDLSL
FT                 CCPQLTPLTNWKILEDLHGSDHFPILISLFPQSQTTNFSSPLFKTKEADWQ
FT                 LFXKLTNDISELIPNSTNINKEAAILNKIILQSAHHXIPQKTPQHYSKNTP
FT                 WRNKTLTKLRTNKFKSWQTLKHFNSTENLIKYKRXNALFXRELKISKNKAM
FT                 TDFTSTISPNTPSDKIWSNIRRFCGLNPTKTIHSITDPNNNLLTTDTXXIT
FT                 QLFAQXWSDHXKDENFNQNFTDNKYTAKPTNYIPSETAQTIESDITQIELL
FT                 AALHSLRGTTPGLNRISYPMIKNTSHVLKTRITNLFNTIFNNFIPQSYKTS
FT                 LVIPILKPNSNKTIITNYRPISLNCCLSKTLEKIIAKRLWWFVTQKNLIHP
FT                 NQSGFKHGKSVSDGLLLADHLITKSLKTKKHTSVIALDFSKAFDRVGEHTI
FT                 VDQLISWKVGPKIINFVKNFMSNRKIRLKIKNXISSPYPLYNGIPQGSPIS
FT                 VILFLIAYNRLAYIISLQKEIQFSAYADDFFLIIPLNRQKNQTYNLNSLFS
FT                 KIHEWCSYSGASLSLEKCQHLHICRKQNCTCNISCNNTPIPSVSNLKILGL
FT                 TINNKYRWDSHIKQIQPALNNKLNIIKCLSSPKLNCNTHTLLNITKSTLIS
FT                 KIDYALFIYGHAPKSTLNKLKTLFNAAIRISLGALRSTPIPNLLFEANVPT
FT                 IEQKRDLITSKTYKTLLHSSNSPLYKYIKQYGTQKRSKLTSTLEKIILSCK
FT                 QHNIPYLPFPNKTTTPQWTFXPSLINTTLQKFSKSNTPPTVYRQQFLELKD
FT                 KYNNHTFIYTDGSLQNSTATFAITTENEILKRCILPHYSSVLSAETLAILD
FT                 AIKLIQKRPGNYIVCSDSLASLKSVRNINNNNLYPITIRSILTKTAPRIKL
FT                 LWIPGHCGIEGNELADTTAKSTYNMPLHYTPNFNTTDVTKFLAKELTYKLK
FT                 QNLELCNRWYKQLNTNPTNTTLYLKNINQKNITRSDQIKIVRLRLGHTRFT
FT                 QQHYNNPDNIIPCPNCHTTNDLTIKHILTNCTATSYLKNQIFRNRCPLSLL
FT                 ENPTPENISKIIEFLKTTNMYRLL"
XX
SQ   Sequence 5501 BP; 2230 A; 1568 C; 591 G; 1095 T; 17 other;
     cagtaccact tcaacctccg aagagataag acgtgttaca gcaaagccta aaaccgcgac        60
     aaacagcaaa ccaaaaccaa cacaaagttc aacaaatttc aaacactaaa cgcaaacgaa       120
     aaacacaaca acaaaaacag catcaacagt tatcgcgggc atctgcccaa caataacaaa       180
     catgcacgaa ccaccggaca taagaacaca cggactaaaa tccaacaaca caaacctagg       240
     cgaacccaag tacataacaa taaaacgaaa cgacgacaac acttttgaaa acgtttcacc       300
     gttcgttatc aaaaaaacaa ttgacttcgc ttgcgatggg gaagttgaaa catgcaagaa       360
     aacaaaagac ggctcactct taatcaaaac aaaaaacaaa ttacaagcca tcaaactact       420
     aagactaaaa ctaatgacaa atattgaaat cactgccacc gaacacaaaa ctctaaattc       480
     cacaaaggga gtcatttact gcaacgaatt gcgcggcata gccgaaaatg aaatactcat       540
     ggaactaaaa acacaacatg taacagaagt tagaaaaatc ttaaaaaaac caccaacaaa       600
     cacaaactct gatgaaaaca acactatgct aatagaaact ggactcatca taataacttt       660
     cggaaccttg aatctcccag aaaaaataag aatcggctac gaaacagtcc gagtgcgccc       720
     gtacatcccc ttacccctac gatgcagaaa gtgcctccgt tttggtcatc caacaccagt       780
     atgtaaaggc atagaaacat gcataaactg ctcaaacgca aaacatacaa atgagaacga       840
     actttgcaaa aacgaaaaaa attgccttaa ctgcagcaac aatcccgata tcgatcacca       900
     acacagcccc ctcgaccgca aatgccctgc attcttgaaa caacaagaac taacagctat       960
     aaaaattaca gaaaaaacag accacaaaac cgcacttaac atctataaca accgacacgg      1020
     ccaacacgtc agaacatctt atgcaaaaac tctcaccaat acaacacaac actcaaccat      1080
     cacgcaagca ccaaataaac caaatacaca tacgccaaca aacacatcgc caatcaccca      1140
     actcacaccc cttactaaaa caacacacca aaccatctca gctgcactgc acgctcacag      1200
     cagactcaat gcagcctctt acacaacatc atcaaccaaa acaccaccag caccatcacc      1260
     aacatctgca cagcaaccta actcgatcga accagaacca gaagacatgg ataccgacat      1320
     cacccaccac accaaagcaa caaacaagcc atacacatca cacctcacag aagacctaaa      1380
     aatcaaacta tatgctaaag ataagtctaa caatctttct accaccctca aaacaaccaa      1440
     accaaacact aaaaccaaat ccaaaactca aacaaaaaca aacacacaaa caacaggaag      1500
     cgattatata aaaaaaaaaa aaaaaacttw atttaattta acacttcacc ttaacttaaa      1560
     cctaaatcaa accaaaccca taacactcat aacctaaact caatttaatt taacctaaac      1620
     ctaaaccaaa cccataacac ccaaatgtca aaaatgtcac tcataatact tcaatggaac      1680
     atcaagggtt acacaaacaa ctacagtgaa ctctcaacta taataaaaaa atactcacca      1740
     caagtcattt gcctccaaga aacccattat tacaacacaa atacccccat ccccgtccca      1800
     ataaattacc aaatctatac aaatacagcc tccaaccgat tcggtggagt agccgtatta      1860
     gtccacaaat ccgtacaaca cactcaatta aaccaaccta gacccctaga aactcttgga      1920
     atagagatca tgtccaaaac aaaaatcaga atcttttcaa catacattcc tcccaacaaa      1980
     actttttcac ttaaatgttt aagcgaccag tttgaaacgc acaataccaa caccaaccaa      2040
     attatactag gcgacttcaa tagctggcac cactcctggg gatcacatca agacaacaga      2100
     agaggcagaa tcctatccaa atttatccaa aacgccaacc tcactatact taacgacggc      2160
     tcacccaccc acttctcaac acacaacaca ctcacccata tagacctttc gttatgctgt      2220
     ccccaactca cccccctcac taactggaaa atactcgaag acctccatgg aagtgatcac      2280
     ttcccaatcc taatatccct gttcccgcaa tcycagacaa caaacttttc tagtcccctg      2340
     ttcaaaacaa aagaagcaga ctggcaactt ttcwcaaagt taaccaatga tataagcgaa      2400
     cttataccta acagtacaaa catcaataaa gaagcggcaa tcctcaacaa aataatccta      2460
     caatcagccc atcatwgtat acctcagaaa acaccacaac actacagcaa aaacacccca      2520
     tggcggaata agaccctgac caaacttagg acaaataaat tcaaatcctg gcaaaccctc      2580
     aaacacttta acagtacaga aaatctwatt aaatacaaac gagwtaatgc actcttccrg      2640
     agagagctwa aaatatcaaa aaataaagct atgacagact tcacatccac aatttcaccc      2700
     aacaccccgt cmgacaaaat ctggtcaaac atcagacgtt tctgcggact taatccaaca      2760
     aaaaccatac atagtatcac agatccaaat aacaacctac tyacgacaga cacatyccrc      2820
     ataactcaac tttttgctca ayactggtca gaccactyca aagacgaaaa cttcaaccaa      2880
     aayttcaccg acaacaaata cacagccaaa ccaaccaact acattcccag tgagacagca      2940
     cagacaatag aatctgatat tacacaaata gaactcctag ctgcactaca ctcccttaga      3000
     ggaaccactc ctggccttaa tagaatatcc taccccatga tcaaaaacac ctcccacgta      3060
     ctaaaaacca gaatcacaaa cctatttaat accattttca acaacttcat cccgcaatcc      3120
     tacaaaacca gcctagtcat acctatccta aaacccaact caaacaaaac aataataacc      3180
     aactatagac caatctcact taactgctgc ctatccaaaa ctttagaaaa aataatagcc      3240
     aaacgcctat ggtggtttgt aacccaaaaa aacctcatcc accccaacca atcgggtttt      3300
     aaacacggca aatcggtttc agacggtctg ctccttgcag accacctgat aaccaagtcg      3360
     ctgaaaacca aaaagcacac ctctgtcatt gcccttgact tttcaaaggc cttcgacaga      3420
     gtcggagagc acactatagt cgaccagcta atcagctgga aagttggccc taaaattatt      3480
     aacttcgtca aaaactttat gtcaaacaga aaaataagac tgaaaataaa aaatngcatt      3540
     agctccccat atcccctcta caacggcatc ccccaaggat cgccaatatc ggtcattctt      3600
     ttcttaattg cctacaacag actcgcttac atcatcagcc tacaaaaaga aatacaattc      3660
     agtgcctatg ccgacgactt tttccttatt attcccctca atagacaaaa aaaccaaacg      3720
     tacaacctca acagcctttt ctcaaaaatt cacgaatggt gttcatactc aggagcctca      3780
     ctttccctag aaaaatgcca acacctacac atttgccgaa agcagaactg cacatgcaac      3840
     atttcatgca ataatacccc aattccctca gtctccaacc taaaaatctt aggactaaca      3900
     ataaacaata aatacagatg ggactcacac ataaaacaaa ttcaaccggc cttaaacaac      3960
     aaacttaaca taattaaatg cctatcaagc ccgaaactaa actgcaacac acacacgctt      4020
     ttaaatataa ctaaatcaac cctaatctca aaaatagact acgcactttt tatctacggc      4080
     cacgcaccta aatcaaccct caacaaactc aaaactttat ttaacgccgc aattcgcatt      4140
     tcactgggag cacttcgctc aacccccatc cccaacctgc tttttgaagc aaacgtaccc      4200
     acaatagaac aaaaaagaga ccttatcaca tctaaaacat acaaaacact actacacagt      4260
     tcaaactcac cactttacaa atacattaaa caatacggga cccaaaaaag aagcaaatta      4320
     acgtcaacac tagaaaaaat catcctctca tgcaaacaac acaacattcc ctacctccct      4380
     tttcctaaca aaacaaccac cccccaatgg acatttcncc cctcccttat caacactaca      4440
     ctacaaaaat ttagcaaatc caacacaccg ccaaccgtat acagacaaca atttctggaa      4500
     ctcaaagaca aatacaacaa ccatacattc atatacacag atggctcttt gcaaaatagc      4560
     acagccactt ttgccatcac caccgaaaat gaaatcctaa aaagatgcat tctaccccac      4620
     tactcatcag tcctctcagc cgaaacacta gcaattctag acgcaataaa actaattcaa      4680
     aaaagaccgg gcaactacat agtttgttct gactccctcg catccttaaa atccgtccgg      4740
     aacatcaaca acaacaactt atatcccata accattagat ccatcctcac aaaaactgcc      4800
     cctagaataa aactcctttg gatacctggc cactgtggca ttgaaggaaa cgagctagcc      4860
     gacacgacag ccaaatccac atacaatatg cccctacact atacccctaa cttcaacact      4920
     acagacgtaa caaaatttct ggcgaaggag ctaacttata aactcaaaca aaacttagag      4980
     ctctgcaaca gatggtacaa acaactaaac acaaacccaa caaacacaac cctttaccta      5040
     aaaaatataa atcaaaaaaa cattacacgc agcgaccaaa ttaaaatagt tagactcaga      5100
     ctaggacaca caagattcac acaacaacac tacaacaacc cggacaacat cataccctgc      5160
     ccaaactgtc atacaacaaa tgatctgaca attaaacata tcctcaccaa ctgcactgca      5220
     acttcatact taaaaaacca aatattccga aacaggtgcc ccctatcgct tctcgaaaac      5280
     ccaacccctg aaaatatctc caaaataatt gaattcctta aaacaacaaa catgtatcgc      5340
     cttctatgac ctaacccaat gtaaatatgt aaatatgtaa gtgtaatatg tatacaaaaa      5400
     atgtaaataa gtatagcagc aagccgaagg cccccgcagc cagtgcttta gaaataagtt      5460
     agtcttaatt tttaattata cctaactatt aaataaataa a                          5501
//
ID   I-2_DWi     repbase;    DNA;    INV; 5234 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5234
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1960-1960 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with ~97% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..1388
FT                 /product="I-2_DWi_1p"
FT                 /translation="MGPPPRPPILRGNQFALLSDSPPAKKKRQKIDLTFPE
FT                 LPTITLENPKYIVIASKNNEKKISDFSCIAVYNALRLISKNISSINNLRDG
FT                 NLLMLVKNQTEAAKFINSPSLPGICDITCKMHETLNQVKGTIYAPYLSDVP
FT                 NEDIIEELRSQKVIDIFKFTKTTDTGTKPSGVILVTFDLYNLPSKIDIAWH
FT                 SVKVREYIPNPMRCKTCQLLGHTAKHCNNEPLCGNCALPPHSPDNCTQTKC
FT                 VNCSEDHPSYSRQCPKYQQQREILKIKTAKKCTMREAKLIFNATTTKQSNP
FT                 SSYAAVTMAGHNRNEKTSDQNNNKNYNSSPNHNKLSKDKTITVTNEGTTTT
FT                 TTSSNTSTPLSYQQKQHENNKNASADFDYATLGCSPKTTEYLKQPQTNKIT
FT                 KFSNTNLPTTSTNLTQKEYNTTSEESMEDSDT"
FT   CDS           1445..5131
FT                 /product="I-2_DWi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTLTILQWNINGYFNNYIDLVLLIKQTKPDIICLQET
FT                 NLKSNNTNVATPKPFIGYFFNNSPNHHAKHGVGILIRQNIPHKTLNIISST
FT                 CSMGIEVLSHPNIIIFNSYIPPNQRLIASDLINIVESAHKPIVYVGDFNAW
FT                 SPLWGSSSRNPKGYQVEDLIVRTNLAILNDGSATHHSTHNSFTNIDLSMTS
FT                 VSLVPYSKWSISQNLHGSDHFPITINLLTHLKPEKVPPIIRFKTDYANWNI
FT                 FQSVCKKHFQFPSTNDLNLFVARITKSIKTAANVTIPQSNPKKQIRNPVWF
FT                 SPSLQDLRKQKQTLWHNYKTFRNSTNLVAYKKARALFKREAIRAKRDSFCN
FT                 FTSNINPLSTTKKLWADINKLVGIFPGPLKSIRDNNVELQNSVDIGNAFGA
FT                 MWSNYSSDENFSNVYKVNKENFLSLAYSPNHISADAKYLDAQITSIELESA
FT                 LQHAKGKSPGYDRISYPMLRNLPIEGKQRLLEIYNKMLDAGSYPHTWRTAI
FT                 IIPILKPNKPSHELSSFRPISLLSCLSKTLEKILAKRILWFITKNKLISPN
FT                 QTAFKQQHSTMDSLLHIHHYASDALSTKNHVTILATDFERAFDRVGVHTVL
FT                 EQLSRWGVGPKTFYLVKAFMTKRSIRVRVNNTLTNFYKLHNGIPQGSPLSV
FT                 VLFMIAFHSLDNIILKHKKIQLSVYADDAIIYSNCKNTNSLFLTFKQILMD
FT                 IVEWGNFSGATLALNKCKLFHICKKHRCTYPTLTVNNTTLEYTSSLKVLGL
FT                 TLDSRLTFKQHCVNLRDSLNKRLNIIKFLGSKRSLVHPTSLIHATRALILA
FT                 KIDYGLAIYGWCAPSNIKLFSPAYHAAVRRSIGAFPTTPTKCLLAEAGLPE
FT                 VQTRAAQLTFKLIPKILCSTNQILLKDFNTTVKQRRRFKVMSTIRRCSSFF
FT                 KKHQLDMPYRWNKISPSPPWQLPGHTVNTSLNLLKKSKTPKNVFQQMLAAE
FT                 TEKVPNWTWLYSDGSKTIDSTSFAVVSQSGTLVSSGILPSYFSIFSAEAVA
FT                 ILKAIKHALELKGKFIVCSDSLSTLNAVNNIYNQTSLICEIRHLCIKHASK
FT                 IKLLWAPGHMGVKGNELADAAAKQAGHSPCLTVIPGVREDLWRNIKEILRK
FT                 KEITQWDSYDHRLKQFNPSKEPVRYPPSCHRRHCNIITRLRTGHSALTHDH
FT                 LLNGKAMPRCPKCEGELSTKHILDTCPQLHNSRICLFGQTQPTSLLISPTL
FT                 NNIKSVIKFLDVNNLLNKI"
XX
SQ   Sequence 5234 BP; 1771 A; 1302 C; 802 G; 1359 T; 0 other;
     tcggtgtatt tctttcgcga cccacgtggt ctatcattat ttgctttcat acattctttc        60
     gtgagtgcag ttgtgtttta gctcataact aaagcttatt tcataagact atggggcctc       120
     cccctcggcc ccctattctg aggggcaatc agtttgcgtt gctttctgat agccccccgg       180
     cgaaaaaaaa gagacaaaaa atcgacttga cctttcccga acttccaaca ataaccctcg       240
     aaaacccgaa atacatcgta atcgcatcaa aaaacaatga aaaaaaaatc tccgatttct       300
     cctgtattgc cgtgtacaac gccctacgac taatatctaa aaacatctcc tccatcaata       360
     acttgcgtga cggcaacctg ctgatgctgg ttaaaaatca aaccgaggct gcaaaattca       420
     tcaactcacc ttctctaccg ggcatttgcg acatcacatg caaaatgcac gaaactctaa       480
     accaagtaaa aggcacaata tacgctccgt acctctccga cgttcccaac gaagatatta       540
     tagaagaact gcgatcccaa aaagtcattg atatattcaa attcaccaaa accacggata       600
     ctggcactaa accctccgga gtcattctgg ttacatttga tttatacaat cttcccagca       660
     aaatcgatat tgcatggcat tcggtaaaag tacgggagta tataccaaac ccaatgaggt       720
     gtaaaacttg ccagctgctt ggccatacag ctaaacactg caataatgaa ccactttgtg       780
     gtaattgcgc tttacctccc cattcgcctg ataactgcac acaaacgaaa tgcgtcaact       840
     gctcagaaga tcacccatct tactctcgcc aatgccccaa atatcagcag caaagagaaa       900
     ttttgaaaat caagacagca aaaaaatgta caatgcgcga agctaagtta atcttcaatg       960
     caacaacaac aaagcaatcc aacccttctt cctacgctgc agtaacgatg gctggacaca      1020
     atagaaacga aaaaacatct gatcaaaata acaacaaaaa ctacaactca agcccaaatc      1080
     acaacaaact aagcaaagat aagacaatta ctgtcacaaa tgaaggaaca acaacaacaa      1140
     caacatcatc aaacacctct acgccgctgt cttatcagca aaaacaacac gaaaataaca      1200
     aaaacgcatc agccgatttc gactatgcta ctctgggctg ctcgcctaaa accactgaat      1260
     atttaaaaca accccaaact aacaaaatta ccaaattttc taacacaaac ctcccaacta      1320
     cctccacaaa tttaactcaa aaagaatata acaccacatc agaagagtct atggaggact      1380
     ctgatacgta attagatata aactttttcc actgctatag tatccacttt acgccttcca      1440
     aataatgacc cttacaattc tgcaatggaa tataaacggt tatttcaaca attacattga      1500
     tctagtatta ttaattaaac aaacaaaacc ggatattata tgcctacaag agactaatct      1560
     caaatctaac aatactaatg ttgcaactcc caaaccattt attggttatt ttttcaataa      1620
     ctctcccaat catcatgcga agcatggcgt gggtatactt atacgtcaaa acatcccaca      1680
     caaaactctc aacataatct cttccacttg ctccatgggc attgaggttt tatcccaccc      1740
     taatattata atatttaatt cctatatacc ccccaaccaa agactaatag cctcagattt      1800
     aataaatatt gtagagtcag ctcataagcc tatagtctat gtcggggact tcaacgcttg      1860
     gagtcctctt tgggggtcca gctctcgcaa tcccaaaggt tatcaagttg aagatctcat      1920
     agtcagaaca aacttagcta ttttaaatga cggctctgcc acccaccatt caactcacaa      1980
     ctcttttact aacattgatc tgagtatgac ttccgtatcg ctagtaccat acagcaaatg      2040
     gtccatttcc caaaatttac acgggagcga tcattttcct attactatta accttctgac      2100
     tcatttaaaa cctgaaaagg tcccacctat aattaggttc aaaactgact acgccaactg      2160
     gaatatcttc caatcggttt gtaaaaaaca cttccagttc ccttcgacca acgacttgaa      2220
     cctcttcgtt gccagaatta cgaaaagcat aaaaacagca gccaacgtaa ccattccaca      2280
     aagcaatcct aaaaaacaga taagaaaccc tgtttggttc agcccaagtc tccaagatct      2340
     aagaaaacaa aagcagactc tctggcataa ctataaaacc tttcgaaact ccaccaattt      2400
     agtagcctac aaaaaagcga gagccctgtt taaaagagaa gctattagag ctaaacgaga      2460
     ttctttttgc aattttactt ctaacattaa cccactttcc acaaccaaaa aattatgggc      2520
     ggatatcaac aaattagtcg gaattttccc agggcctctt aaatccatca gagataataa      2580
     tgttgagcta caaaattcgg ttgacattgg taatgctttt ggagctatgt ggtccaatta      2640
     ttccagcgat gaaaacttct ctaatgtgta taaagtaaat aaagaaaact tcctctctct      2700
     agcatactcg cccaatcaca tttccgcaga tgctaagtat cttgatgctc agatcacatc      2760
     gattgagcta gagtcagccc tgcagcacgc taaggggaaa tctcctggtt atgaccgcat      2820
     ctcataccct atgcttcgaa acttgccaat agaaggaaag caaagattgc tagaaattta      2880
     caacaaaatg ttagatgcag gtagctatcc gcatacatgg agaacggcca taataatccc      2940
     aatccttaag ccaaacaaac cttcccacga attatcatcc ttccgtccca tatccctact      3000
     ctcttgcttg agcaaaacac tggaaaaaat tcttgccaaa aggatcttgt ggtttattac      3060
     caaaaataaa cttatcagcc ccaaccaaac tgcattcaaa caacaacaca gtaccatgga      3120
     ctcactattg catatccatc attacgcgtc agatgctctt tccaccaaaa atcatgtaac      3180
     catcctggct actgattttg aaagagcttt tgatcgcgtt ggtgtgcaca ccgtactgga      3240
     gcaactttcc cggtgggggg taggtcctaa gaccttctac ctagtgaagg ctttcatgac      3300
     caagcgatcc atccgtgtta gagttaataa tactttaact aatttctata aattacacaa      3360
     cggcattcca caaggatcac cactctcagt ggtattgttc atgattgcct tccactccct      3420
     agacaatata atactaaaac acaaaaaaat acaactctcc gtttacgcgg atgatgctat      3480
     aatatacagc aactgcaaaa atacaaattc actatttctt acttttaaac aaatactcat      3540
     ggatatcgtt gaatggggta atttctcagg ggccactctt gccttaaaca aatgtaaatt      3600
     atttcatatt tgtaaaaaac atcgttgtac atatccaact ctaacggtaa ataacacaac      3660
     attagaatat acatctagtc ttaaagttct cggccttacg ctcgacagta gacttacgtt      3720
     taagcaacat tgtgttaatc ttagagatag ccttaacaag cgccttaata tcattaagtt      3780
     tcttgggtct aagcgttctc ttgtccatcc aacatctcta attcatgcga caagagccct      3840
     aatactggcc aaaatcgact atgggctggc aatctatgga tggtgtgcgc catccaacat      3900
     caaattgttc tcccccgcat accatgcagc agtacggcgt agcattggcg ccttccccac      3960
     aactccgacg aaatgccttt tagcggaagc tgggcttcct gaagtacaga cgagagccgc      4020
     gcaactgact tttaagctta tacctaaaat tctctgctcg accaaccaaa ttctgctaaa      4080
     agacttcaat acaacggtta aacagcgacg aaggttcaaa gtcatgtcta ctatacgcag      4140
     atgttccagt ttcttcaaaa aacatcaact ggatatgcca tatcgttgga acaaaatcag      4200
     cccatctcct ccttggcaac ttccgggcca caccgtgaac acgtctctca acttattaaa      4260
     aaaatcaaaa acaccaaaaa atgtatttca gcaaatgcta gctgccgaaa cggaaaaagt      4320
     ccccaactgg acctggcttt acagtgacgg atcgaaaaca attgactcca cgagcttcgc      4380
     agtcgttagc caatctggaa ccctcgtctc atctggaatt ctcccctcat atttctcaat      4440
     attttctgcc gaagcggttg caatccttaa agcaattaag cacgctctcg aacttaaagg      4500
     caaattcata gtatgcagcg acagtctttc taccctcaat gcagttaata acatatacaa      4560
     ccaaactagc ctgatatgtg aaattcgaca tctttgcata aaacacgcta gcaaaataaa      4620
     actcctttgg gctcctggtc acatgggcgt aaaaggtaat gagcttgcag atgcagcggc      4680
     caaacaggca ggacattctc cttgcctaac tgtcatccct ggtgtcagag aagacttatg      4740
     gcgcaacatt aaggagatac taagaaaaaa ggaaatcact caatgggaca gttacgatca      4800
     taggcttaaa caatttaacc caagcaagga accagtccga tatccacctt catgccacag      4860
     aagacattgc aatatcatca cccgcctcag aacgggtcac tccgccttaa cccacgacca      4920
     tctgctaaat ggaaaagcta tgcccagatg cccgaaatgc gagggagaat tatcaaccaa      4980
     acacatattg gatacctgcc cacaactgca taattcaagg atttgtctat ttggccaaac      5040
     ccaacccacc tctcttctta tttcacccac actcaataac ataaaatcag taatcaaatt      5100
     cctagatgta aataacttac tcaataagat ataagttaac ggtcgagtcg atggccttag      5160
     cagctagcac tcttaacccg ttagttatta tattattttg tataataatt aataataaat      5220
     aataataata ataa                                                        5234
//
ID   I-2_DYa     repbase;    DNA;    INV; 5479 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DYa;
KW   I-2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5479
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1920-1920 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with ~96% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..1359
FT                 /product="I-2_DYa_1p"
FT                 /translation="MGTVDPPDKTKSMSEPKFLIMKRTDDSSMANISPFLI
FT                 KKTIDFTCNGEVLMAKKTRDGNLLIKTKNLLQALKLKKLQLLGSFPVEVRE
FT                 HSTLNASKGVIYSNDLRCLPENVIKDELATQNVIEVKKILKKVNNELEETG
FT                 LIILTFGSHITPENIKIGYEVVKVRTFIPAPLRCNNCFRFGHITTLCRNKK
FT                 SCINCAKEYHMDPNTKELCNFNKCCVNCKDLNLPDTNHSSVFRRCPIFVKH
FT                 QEIQAIKTLEKVDIKKAISIYNSRHPHDGSLYSSVAKTNSTDYNNHPQNNA
FT                 APNHSTTTRKILSYEELAGNNEESKTSNIILSHSTNKLPTSPSPSVKILPK
FT                 NISNRLKSQLKPKDKKQQKXNNVIDLKISHKEKIPDLSSSDEQMDLSNLED
FT                 EIN"
FT   CDS           1570..5274
FT                 /product="I-2_DYa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MKMSLKVIQWNINGFNNNYSELQTLIAKHKPHILTLQ
FT                 ETHILAHNLHPIPINYAMITLNSSPSYGGVAILIHKSIEYREITLRSDFDA
FT                 ICVEICSKTKLQIISTYIQPKANFTLNNLYSVLNIANNIPTLITGDFNCWH
FT                 KRWGSPVNNRKGITLEKWIAQSNLIILNDGSPTHLSTHNTLTHIDLSICTP
FT                 ELAIETNWTIETDFFGSDHLPILNNIFNRAQIQKPTHRPFFKTNSANWDLY
FT                 TLLCISHNSSLPISSNINQEAANLSKIILRSAHKSIPKSTPKTSHTVPWWN
FT                 KELEKLRKSKNKAWQLLKRNITTENIIDYKRKNALFRRTHKEAKKESTSKF
FT                 TEEINPLTPIPKIWNNIRRLCGLNTLKGLHCIKSINSTDNITQPQDIAELF
FT                 CQNWSLQSNNSNFTNSFTTNKSRILADDLSYAPGKAALPIENEINFIEFSS
FT                 ALNSLKGNTPGLDRINYSMIKALPREIKNRVINLYNAILGDVIPQQYKLSL
FT                 IIPILKPNNEKTMISSYRPISLNSCLAKLLDKIVAKRLWWFITSNKLLHNS
FT                 QVGFRKGKSVMDCLLFIDHIITKSLATKNHISIVSLDFSKAFEKIGIHAVI
FT                 DQLIKWGVGPHILIYVKNFMTNRKIIVKVGKSYSKSLPLDNGIPQGSPLSV
FT                 VLFVIAYQKLTETIALYKEIYISAYADDFNLLIKLDKTKNTTINLDSLFCN
FT                 ISDWCNYSGGSLSPAKCKHMHICNKQNCICNVSTSQVHIPNVSSLKLLGVT
FT                 FNRKHKWNPHIDDLTTCLSKRLDIIKCLASTKFGCSTLTLVSIVKSIIISK
FT                 LDYALPLYGSAAPSSLKKIKSILNTAVRIALGAFRTTPSSNILFEANITPL
FT                 DIRTEFLTTNLFQLVLSSSDSPLHNIIKNYKQPKPEEKHSVLDKVLKLNKS
FT                 FNIVLRPPKKLKHKDPPWALNSSTINTTLSKLNKNTTPPEVYRKQFLQLKS
FT                 EQSNKTSFVYTDGSQMNESTGYAITSETEVFKMXLLPTYSTVFSSELIAIH
FT                 EAILLLKTRRGKFMICSDSLSSLNAIKNVNNNTYYVVEIRNLLIRFFPKFT
FT                 LLWVPSHINITGNELADKSAKDSRLFPLTYTXNNNNTDLKNHIKKFYFTNQ
FT                 LNRFTDTSTWYKSINLHKMNIKNYLNYKDKLMIPRKDXIKLIRIRLGHTNL
FT                 THAHYMNKNASALCPFCNTNNSITLEHLLTFCXTFNQIRLKYFSQSSLKSL
FT                 VTNPTSDNIRTIIKYLKECNIYHII"
XX
SQ   Sequence 5479 BP; 2032 A; 1195 C; 769 G; 1475 T; 8 other;
     acagttccaa tttgactttc ggacagacaa gacgtgtgta cggaaagttt cttgcttgct        60
     tcttatctaa aaccaatcgc ttgcttctta tcgcaaacca ttcttcaaaa caaaacaaag       120
     caaagcttaa agcataacat aacaaaaata aaactaatca ccgttacgat ggggaccgtt       180
     gatccccctg ataagacaaa atcaatgtct gaacccaagt ttttgattat gaaacgaact       240
     gatgacagtt caatggcaaa catctctccg tttttaataa agaaaacgat tgatttcact       300
     tgcaacggcg aagttttgat ggccaaaaaa acacgagacg gaaatttgtt gatcaaaact       360
     aaaaatttgc tacaagcctt aaaattgaag aaactccaac ttttgggatc attcccagtg       420
     gaggttcgtg aacattctac cctcaatgct tcaaaaggag tcatatattc caatgatcta       480
     cgctgcctac ccgaaaacgt aattaaagat gaactggcaa cccaaaacgt cattgaagtc       540
     aaaaaaattt taaagaaggt taacaacgaa ttggaagaaa ctggattgat catattaacg       600
     tttggctcac acataacacc tgaaaatatc aaaattggat atgaagtggt caaagtacgc       660
     acttttatac ctgccccact ccgctgcaat aattgcttcc gatttggaca catcaccacg       720
     ctctgtcgca acaaaaagtc atgtataaat tgtgccaagg aataccacat ggaccctaac       780
     accaaagaac tttgcaactt caataaatgt tgtgtaaact gcaaggatct gaacctaccc       840
     gacaccaacc actcatcagt ctttagaaga tgccccatct tcgtgaaaca tcaggaaata       900
     caagccatta agacgctcga aaaggtggac attaaaaagg ctatctccat ctataactcg       960
     agacacccac acgatggatc attgtactcc agcgtggcca aaacaaactc cactgactat      1020
     aacaaccatc cccaaaataa cgcggcgccc aatcactcaa caaccacacg taagatactt      1080
     tcctacgagg aattagcagg aaacaacgag gaatccaaaa cttcaaatat aatcctatca      1140
     cattccacta acaaacttcc caccagccca agtccatcag ttaaaatcct tccaaaaaat      1200
     atttctaatc gacttaagtc acaacttaaa ccaaaagata agaaacaaca aaaaamaaac      1260
     aatgtaatag atcttaaaat tagtcataag gaaaaaattc ctgatttgtc atcttcagat      1320
     gaacaaatgg atctctcaaa tttagaagac gaaattaatt aaccaatgct gcaaccgatc      1380
     cgagatgtcc tcccctgcgg cctaccaatc gctttacaac atgtggaggg attggtgggg      1440
     cgggggggag gacatttcag ttgcagcaat tttcactgta gtttgtgtct gattgcgcac      1500
     tgttgctgcc agacaccaac aaatcatatt ttagttttat ctctgtactt ttcacaatac      1560
     tcctagccta tgaaaatgtc tttgaaagtt atacagtgga atatcaatgg tttcaacaac      1620
     aactacagtg aactccaaac cttaatagca aagcacaaac cacatatatt aactctccaa      1680
     gaaactcaca tcttagcaca taatctacac cccatcccaa tcaactatgc catgataact      1740
     ctgaactctt ctccatctta tggtggggta gcgatcctca ttcacaaatc aatcgaatat      1800
     cgagaaataa cccttagatc cgactttgat gctatctgcg tggaaatctg ttctaagaca      1860
     aaactccaaa ttatttcaac ttacatacaa ccaaaagcta attttactct caacaaccta      1920
     tactcagtgc ttaatatcgc taacaatatc ccgaccttaa taactggaga ttttaattgt      1980
     tggcataaaa gatggggctc ccctgtaaat aacaggaaag gaattacact ggaaaaatgg      2040
     attgcccagt ctaacctaat tatcctcaac gacggtagcc caacacattt aagcactcat      2100
     aacacattga ctcatataga ccttagcata tgtactcccg aacttgcaat agaaacaaac      2160
     tggacaatcg aaacggactt ctttggtagc gaccacttgc ccattctgaa caatatattt      2220
     aatagagctc aaatccaaaa accaacacac aggccatttt tcaaaacaaa ttcagcgaat      2280
     tgggacttat atacgcttct ttgcattagt cacaactctt ccttacccat aagctcgaat      2340
     ataaatcagg aagcagccaa tcttagtaaa attattttaa gaagtgcaca taaaagcatc      2400
     ccaaagtcca cgccaaaaac ttcgcacact gtaccttggt ggaataagga actagagaaa      2460
     ctccgaaaaa gtaaaaacaa ggcttggcaa ttacttaaaa gaaatattac taccgaaaat      2520
     attattgact ataagagaaa aaatgcacta tttagacgta cgcacaaaga ggccaaaaaa      2580
     gaatctacat ccaaattcac agaagaaatc aatcctctta ccccaatacc aaaaatttgg      2640
     aacaatatac gccgtctctg cggcttaaat actttgaaag gcttacactg cattaaaagt      2700
     ataaactcta ctgacaacat cactcagcct caggacattg cggagctatt ctgccaaaac      2760
     tggtctttac aatcaaacaa ctcaaacttt accaactcgt ttacgacaaa caaaagtaga      2820
     attttggcag atgatctgtc atatgctcca ggaaaggctg ctttgccaat agagaacgaa      2880
     ataaacttta tcgaattttc ttcggccctt aattccttaa aaggaaacac tccaggccta      2940
     gatcgaataa attattccat gattaaggca cttcccagag aaattaaaaa cagagttata      3000
     aacttatata acgcaatact gggtgatgta ataccacaac aatacaagct cagcctcatt      3060
     atacccatat tgaaaccaaa taatgaaaaa acaatgatct catcatatcg acctatttcg      3120
     ctgaactcat gcttagcaaa acttcttgac aaaattgtag ctaaaagact atggtggttt      3180
     attacttcta acaaacttct acacaatagt caagttggtt ttaggaaagg aaaatctgtt      3240
     atggattgtc tactttttat agaccatatt ataaccaaat ccttagccac aaaaaaccac      3300
     atatcaattg tatcacttga cttctccaag gcgtttgaaa aaattggcat tcacgccgta      3360
     atagatcaac ttattaaatg gggggttggc ccacacattc ttatttacgt caagaatttt      3420
     atgacaaaca gaaaaataat tgttaaagtg ggtaaatcat actcaaaatc acttccattg      3480
     gataatggca tcccccaagg gtcaccactc tctgtggttc tgtttgttat tgcttaccaa      3540
     aaacttacag aaaccattgc tttatacaaa gaaatataca taagtgcata cgccgacgac      3600
     tttaatcttc taattaagtt agacaaaact aaaaatacta cgataaacct agattcctta      3660
     ttttgcaata tttcggattg gtgcaactac tctggcggca gcctatctcc cgccaaatgc      3720
     aagcatatgc acatttgtaa caaacaaaat tgtatttgca atgtatctac cagccaagtc      3780
     cacattccca atgtttcttc attgaaactg ttgggtgtta cattcaatag gaaacacaag      3840
     tggaacccac atattgatga tctcacaaca tgtctttcaa aacgcctcga tatcatcaag      3900
     tgtcttgcaa gcacaaagtt tggctgcagt acacttacat tagtatcaat tgttaagtcc      3960
     attattattt caaaattgga ttatgctttg ccattgtatg gatcggctgc mccaagcagt      4020
     ctgaaaaaaa ttaagtccat tttaaataca gcagttagga tagccttggg agcatttcga      4080
     actacaccat cgtctaacat tctatttgaa gcaaacatca caccccttga tatcagaaca      4140
     gagtttctaa ctacaaatct cttccaactc gtacttagca gttcagactc accacttcat      4200
     aacataatta agaactataa gcaaccaaaa ccagaggaaa aacattctgt tttagacaaa      4260
     gttcttaaac ttaataaatc ctttaacatt gttttaagac ctccaaaaaa actcaaacac      4320
     aaagacccac cttgggccct taactcgagt accatcaaca cgacactcag taaactcaat      4380
     aaaaacacaa cacctccaga agtctaccga aaacaattcc ttcaacttaa gtcagagcaa      4440
     agtaataaaa catcattcgt atatacagat ggatctcaaa tgaacgaatc tacaggctat      4500
     gcgataactt cagaaactga agtttttaaa atggkgttac ttccaacata ctccaccgta      4560
     ttttcttcgg aattaatagc gatacacgaa gcaattttac tacttaaaac cagacgaggt      4620
     aaatttatga tttgttccga ctctctctca tcccttaatg caattaaaaa tgtaaacaac      4680
     aatacatatt acgtagtcga aataagaaac ttattaataa gattttttcc aaaatttacc      4740
     cttctgtggg ttcccagcca cattaatata acaggaaatg agcttgctga taaatcagca      4800
     aaagactcta gactctttcc attaacatac acacawaaca acaataatac agacttaaag      4860
     aatcacataa aaaaatttta ttttacaaac caactaaata ggttcaccga tacatccact      4920
     tggtacaaat caatcaattt acataaaatg aatataaaga actatctgaa ctataaggat      4980
     aaattaatga tacctcgcaa agatkagatt aagttgattc gcatccgact gggacacacg      5040
     aatttaacac atgcacacta tatgaataaa aatgcctctg ccttatgtcc tttttgtaac      5100
     acgaacaact cgattaccct cgaacatttg cttacttttt gtcmcacctt taatcaaatc      5160
     agattaaaat atttttctca atcttcatta aaatctttag taacaaaccc aacatctgac      5220
     aacataagaa ccattataaa atatttaaaa gaatgtaaca tatatcatat aatataaaat      5280
     aaattaagat tcataaggtt aatcatagtt gtagaatttt atattaacaa tataaataat      5340
     attcatacca tcctgtaaat atgtaaaaaa aaaaaacaga caaatgtaca ttagccgaag      5400
     gcctcagtag ccatggctcc aaaaactgtt cacttaaact ttcaagctta agtcaactct      5460
     tcaaataaaa awaaaawaa                                                   5479
//
ID   I-2_LMi     repbase;    DNA;    INV; 5525 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 19.11, Created)
DT   21-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5525
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3135-3135 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(141..767,653..1465)
FT                 /product="I-2_LMi_1p"
FT                 /translation="MDSGQYGEGGHSNFPPNSVDLTTQDPWYADASQSVST
FT                 INQIADNENLNMDVETTNSKLKSKRLSDETLTKKDKRQAKAKKLLNKTDED
FT                 TSQTLQCNKTEHTVVQNSGNNSLSNEKHQTLNDNLNVTHSVANXVNIDQKT
FT                 NTQSVYVESKDNRYKVDSSGPFYIYVEGSIGNVGNLHPMALGKIIFQAKPE
FT                 CRRLITNIKLSEKIELELICWQLASNGIGKNYISSKTRMPEAHNKYQTVGK
FT                 NRIRIDLTSGQAANNLVQSSLFHSNQLLAYIPAHRLTRRGVIRNVDLNITD
FT                 DELFQALESPMKVLNIRRMTKRVVNGNSLSSFSYKTCVVTFDSQYLPEYVS
FT                 IYGMRCQVRPYVSTVRECYNCLRFDHISSQCRSQKRCKYCGDNHSADECSS
FT                 THPTCVNCKGNHNSMDKRCPEYEKQKQIKKISAELNIPHKEAKDLVTNKPY
FT                 AEVASAQWTRDDEKSFPTLPKTQHTNSLGNKQNPQ"
FT   CDS           join(1528..1743,1747..2094,2013..2201,2205..2726,
FT                 2974..3243,3230..4111,4080..4244,4268..4426,
FT                 4442..5332)
FT                 /product="I-2_LMi_2p"
FT                 /translation="MAANPYSPQYHHIPSQREANVGTTTTSDTLSNTVIIE
FT                 KLVNLVARLIRQVQATNTDFVDPVTIQQEIVSILSLKQIIMKIFQWNARSA
FT                 ISNKDSLEHELFLKNVEIASISETWFKPDTHIKFRGYHVLREDRNDGKGGV
FT                 ALLIRSSVAFSAHYIDFTNIHNFQAVAAKVRISSQVLTIISLYCPQKQKFS
FT                 SGSSKSAHFITSSNYNLIILSPKTKIKMKEWYAYSSVRPAVFNLWDFNAHN
FT                 SSWGCEVNDIGEAILEVMDEFNLCILNDGSPTLLTKPHQSKSAVDLTICTA
FT                 SLAGLFEWKAYTYLIGSDHFPIEISVNSSPTKITYEPKLRWNTRKADWTTY
FT                 QRVLEEECISFELTDGCHSTYSRFINMINTAAKASIPQKKVTRNPKFRPAP
FT                 WWNSECSLAVAKRKLAFTHYKRNSTREIFALELELVLNCSTIQLLALIKST
FT                 TPCYLLTCADYNAIWAESEVPHEWSTQIIVPVLKPSKDPSTAESYRQFTVI
FT                 VLAKLLNASSNYVLNGGWKMVVGNNKKSQYGFRKGRSTMDYLSILTLDIEK
FT                 VFAENGYLTALFLDISGAYDSVDITLLLQKLERLGIPHICLRFLQNYLRQR
FT                 TIYFKKQDNSLYGPFSVWKGIPQGAILSPILYALYVADLENIFDPTIRVLQ
FT                 YADDVCIYTASTSLDLCCLWMNKAADKLSAWTLKNGLNLSHSKSSVVFFTR
FT                 KRQSYQMNTINLGPFTFNVRTIAKVLGLLLDSKLSWAEHIKHIVTKAEKAL
FT                 NVLRAVSGVWWGAQPEILLILYYALIRSEMDYGCFCMEMRHRCTQKLNVLQ
FT                 FRPSGSVMYCSFGHQAVSRSNEVVTTNVLLIEAKEMPLDIRENYLPKGFSS
FT                 KICSDQPPGHSRILIRRQANTFVSKRLPMSQFYISLTQKDPILPVFSKEYE
FT                 TTVYQPPRQRVKSQIIGKQMAGFFAYIYNGSKTPEGAGCAFYCPRLHKSKK
FT                 FMLPPLTSIYTAELIAVKEAVKFGTERGNKTLILTDSRSILEKLQHRNWKA
FT                 NNSYIYELVEIIMKANKEKKCVHLMWIKGHSGIRHNEAVDALAKESIKDGD
FT                 PLFIQLPYFDFIQVSKKEAYNQWEQQWQVSQQKKGLSYATLQRTIPAKPWF
FT                 WQKNLPRRYVTSMIRIRLGHACFPAHLYRIGVKDSPKCNVHPEEDGDLDHI
FT                 ILGCTKYAPQQNKLWQKLAKMKIPFPTNIRLLMNENKPNLYDVLFKFLQEA
FT                 DIQL"
XX
SQ   Sequence 5525 BP; 1929 A; 1069 C; 1033 G; 1493 T; 1 other;
     gtgatctttg gtgaagttac agttagtgtc gttctgtatt ttcttatttt gtgaaataag        60
     ttttcaattt gaaaatctga ttttagtgag ttgtagtgtt tatttttagt gtttggcttc       120
     cttcagtgtt caatgaaata atggacagtg gtcaatacgg cgaaggcgga cattcaaatt       180
     tcccgccgaa ttccgtcgac ttgactacac aggatccatg gtatgcagat gcaagccaat       240
     cggtttccac aattaaccag attgcagaca atgaaaactt aaacatggac gtcgagacca       300
     caaacagtaa gttgaaaagc aaacgtttat ctgatgagac actaactaaa aaagataaga       360
     ggcaggcaaa agcaaagaaa ctactgaaca aaactgacga agatacgtca cagacattgc       420
     aatgcaataa gacagaacac accgtcgtac aaaattctgg aaataattcg ttaagtaatg       480
     aaaagcacca aacacttaac gacaacttaa atgtaacaca ttccgtggca aatastgtta       540
     atatagatca aaagacaaac acacaatcgg tgtatgtgga atccaaggat aatcgataca       600
     aagtcgattc gtcaggtcct ttttatatat acgtagaggg atcgatcggt aatgttggca       660
     acttgcatcc aatggcattg ggaaaaatta tatttcaagc aaaaccagaa tgccggaggc       720
     tcataacaaa tatcaaactg tcggaaaaaa tagaattaga attgatctaa cttccgggca       780
     agctgcaaat aacctagttc aatcttcact gttccacagt aatcagttac tagcctacat       840
     tccagctcac agattaactc gacgtggtgt aattcgtaat gttgatctca acatcacgga       900
     tgacgaacta tttcaagctt tagaatcgcc aatgaaagtt ctcaacatca gaaggatgac       960
     taagcgcgtc gtaaatggga attccttgtc atctttctca tacaaaacat gtgttgtgac      1020
     cttcgattcc cagtacttgc cagaatacgt aagcatatac gggatgaggt gtcaagtccg      1080
     accatatgta tcaacggtca gagaatgcta caactgtctg agattcgacc acattagcag      1140
     tcaatgtcgc tctcagaagc gttgtaaata ttgcggtgat aatcactcag cagatgaatg      1200
     ctccagtact caccctactt gtgttaattg caaagggaat cataattcaa tggataagag      1260
     gtgtccagag tatgagaagc agaaacaaat aaagaaaata tctgccgagt taaacatacc      1320
     acacaaagaa gctaaggatt tagttactaa caagccttat gcggaagttg cgtcggctca      1380
     gtggacgcga gatgacgaga aatctttccc aactcttcct aagacacaac atacaaacag      1440
     cctcggcaac aaacaaaatc ctcagtaact tcgacggtac cacgattccc agtcgtacac      1500
     cgtgaaagtg aactaccatt aggaccaatg gcagcaaatc catatagccc acagtatcac      1560
     catattccca gccagaggga agcaaatgta ggcactacca ctacgtctga tacgctcagc      1620
     aacacagtaa ttattgaaaa acttgttaac cttgtggcca gacttataag acaagtacag      1680
     gcaacaaaca ccgactttgt ggatccagta actatacaac aggaaatcgt tagtatttta      1740
     tcttaattaa aacaaataat aatgaaaatt ttccagtgga atgctcgttc agcaatctca      1800
     aacaaggatt ccttagagca tgaactattt ttgaaaaatg tcgagatcgc ttcaattagt      1860
     gaaacgtggt ttaaacctga cacacatatt aagtttagag gctatcatgt acttcgtgaa      1920
     gacagaaatg atggaaaagg tggtgtggct ctgctaataa gatcgtcagt ggctttttcc      1980
     gctcactata ttgattttac caatatacat aattttcaag cggtagcagc aaaagtgcgc      2040
     atttcatcac aagttctaac tataatctca ttatactgtc cccaaaaaca aaaataaaaa      2100
     tgaaggaatg gtatgcttat tcgtcagtta gacccgccgt ttttaatttg tgggatttca      2160
     acgctcataa ttcttcatgg ggttgcgaag taaatgatat ctagggagaa gccattctag      2220
     aagtaatgga cgaatttaat ttatgcatat taaacgatgg gtctccaact ttgctcacta      2280
     agccgcacca gagtaaatca gctgttgatt taactatttg tacagcatcg ttagcaggtt      2340
     tattcgaatg gaaagcatac acatatctga taggttcaga tcacttccca attgaaatat      2400
     cagtaaatag ttcaccaaca aaaattacat atgaaccaaa attaaggtgg aatacaagga      2460
     aagcagattg gactacttac cagagggttc tagaggaaga atgtatttca ttcgaactga      2520
     cagatggatg ccacagtaca tatagcagat tcataaacat gattaataca gctgcgaaag      2580
     cctcaattcc tcagaagaaa gtaacaagaa atccgaaatt tagacctgct ccatggtgga      2640
     attccgagtg ctcacttgca gttgccaaac gtaaattagc attcacacat tacaagcgta      2700
     acagcacgcg ggaaattttt gcactttaag aaagggtgca gagccaaacg attaaagccc      2760
     aaaaaatctt cctggaaaaa ataccgaaaa gaaatacacc atctcgaaat atgtcaatga      2820
     taagacgata aacaataaat cttacacaaa aatcataaac aactggttga aaattttatt      2880
     gcatccttca gcagaaggag aacattactg tttaaaaata gcaatctgga gactcacacc      2940
     atttgtgaat tattcaaaac catttacaat taagaactag aattggtcct caattgttct      3000
     accattcagc tcctggcatt gatcaaatca actaccccat gttatctact tacctgtgca      3060
     gattacaatg caatatgggc agaaagtgaa gttcctcacg aatggtcaac acaaattatt      3120
     gttcctgtat taaagcccag taaagaccct tctacagcgg aatcctatcg ccaattcact      3180
     gtcatcgtgc ttgcaaaact tttgaacgcc tcctcaaatt acgtcttgaa tggtggttgg      3240
     aaataataaa aagtcgcagt atggctttcg gaaaggtaga agcactatgg actatttaag      3300
     cattctaaca ttagatattg aaaaagtttt tgctgaaaat ggttatctaa ctgctttatt      3360
     cttggatata tcaggagcat atgactctgt tgacattacc ttacttttgc agaagttaga      3420
     acgcttaggt attccacaca tttgccttcg atttctccaa aattacttac gccaaagaac      3480
     aatctatttt aaaaagcaag acaacagtct atatggacct ttctcagttt ggaaaggaat      3540
     tccacaagga gctattctaa gtcctatatt atacgcatta tatgttgcag atctggaaaa      3600
     tatattcgat cccactattc gtgtgctaca atacgcagat gatgtgtgca tatatacagc      3660
     ttcaaccagc ctggatcttt gttgcttatg gatgaacaag gcagctgata aactatctgc      3720
     atggaccctg aagaatggct taaacctatc acattcaaaa tcttctgtag ttttctttac      3780
     gcggaaacgc caatcatacc agatgaatac cataaatcta ggacctttta cttttaacgt      3840
     aagaacaata gcaaaggtat tggggcttct tttggatagc aaactatcct gggctgaaca      3900
     catcaagcac attgttacga aggcagaaaa agcccttaat gttttacgag cagtaagcgg      3960
     tgtatggtgg ggtgcccaac cggaaatcct cctcatctta tattacgctc taatacgctc      4020
     tgaaatggac tatggatgtt tctgtatgga aatgcgccac agatgtactc aaaaactaaa      4080
     tgtattgcag tttcggccat caggcagtgt ctaggagcaa tgaagtcgtc accacaaatg      4140
     tcctcctaat tgaagcgaaa gaaatgcctc tggatatccg tgagaactac ttgccaaaag      4200
     gtttctcttc aaagatttgt agtgatcaac cacccggtca tagttaaagc taagcaaatg      4260
     tcagtaaagg atactcatca gaagacaagc gaacaccttt gttagtaaaa ggcttccgat      4320
     gtctcagttt tacatttccc tgacacagaa ggacccaatt ttaccagtgt tcagcaagga      4380
     atatgagaca acagtctacc aacctcccag acaaagagtg aagagttaaa gacaagtgta      4440
     acaaattatt ggaaagcaaa tggccggatt ttttgcatat atatacaacg gatccaaaac      4500
     acctgaggga gctggttgtg cattttattg tcccagatta cacaaatcaa aaaagtttat      4560
     gctaccacca ttgactagca tctacactgc tgaattaata gcagttaaag aagcagttaa      4620
     gtttggaaca gaaaggggga ataaaacact aattttgaca gattctagaa gcattttaga      4680
     gaaattgcag catagaaact ggaaagccaa caacagctat atttatgagt tggtggaaat      4740
     aataatgaaa gccaataaag aaaagaaatg tgttcatctt atgtggataa agggtcattc      4800
     aggcattcgg cacaatgaag cagttgatgc tctagcaaaa gaaagcatca aagatgggga      4860
     cccactattt atacagcttc catatttcga ctttatacaa gtctcaaaaa aagaggcata      4920
     taatcaatgg gaacagcagt ggcaagtttc gcagcagaaa aagggcctct catatgctac      4980
     acttcagcgt accattccag caaaaccgtg gttctggcag aagaatcttc caaggagata      5040
     cgtaacatca atgattagaa taaggttagg acatgcatgc ttccctgcac atctctacag      5100
     gattggagtg aaagactccc ccaagtgcaa tgttcatcca gaagaagatg gagatcttga      5160
     tcatatcatc cttggatgca ccaaatatgc cccacagcaa aataagctat ggcagaagct      5220
     cgcaaaaatg aaaattccct ttcctacaaa cataagactg ttaatgaatg agaacaagcc      5280
     aaacctttat gatgttttat ttaaattttt acaagaagcg gatatacagc tttgacatca      5340
     agtgtggaat ttataagttt gaagtttgta attttaaaat ttgtaatttt gaattgtaat      5400
     ttttctaacc atgtttaaaa cagatgtata tacaaaaagt aattgtacac taaattaaaa      5460
     aatgtaatgg ctgtattgtt tcatgcaaaa agccaataaa aataacatca atcaatcaat      5520
     caatc                                                                  5525
//
ID   I-2_NVi     repbase;    DNA;    INV; 5845 BP.
XX
AC   .
XX
DT   01-NOV-2010 (Rel. 15.11, Created)
DT   01-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Nasonia
DE   vitripennis.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5845
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 10(11), 1905-1905 (2010).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99% identity.
CC   The 3' terminus is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           237..2246
FT                 /product="I-2_NVi_1p"
FT                 /translation="MGDHPQNLPRVLRPPRTYATSGLKLNNRHNTRVTTKE
FT                 SIGENKNGLNPKRNSLIQARLNHTKSSNNLDQINTTAKGDDLKDTKMETED
FT                 ISLEEIEKIIHTPNDNKTLIQSQPITETNTSSLDQRNHESQNTSHENSKAD
FT                 SERKRPAEFRSPESSSPNNQRFKKKPYNDNARKNLFNDHSLPTDPNDNRND
FT                 KDLPSEYDINIQGPYKIYLQSIDNDRLDAIKIAKSLIPKIEIKDSLHEIKQ
FT                 LSYNKVCVIAKYRNIANLILNLTDWKDLKIRAFIPNHLLSKQGIIKGIPVE
FT                 ITDDELKQFIELDSPFGPLQITHTRRFTKKIYNKSTDKVDILPTKTVQITV
FT                 KGQFLPAEAKVLKVIYPIETYYPQVRQCYRCFRFGHIKNNCKAPNERCIRC
FT                 GEPKHTDGNECPYINTQPTCLHCKQNHLPIDKSCPAKIEEQNLKNMATDQN
FT                 ITIAELKNQLRKXPAYNKSHFPTIGNSSQPTQAQTDTLKNTMYADKVKSYS
FT                 KQPRNHPTQPSVEPTDRGSTQSVGHNHQLTQSPSQKSKNNNFTPNFRLAKQ
FT                 HTDCLSYVNGNTNLKIKPINHRMTAKDFFDHSYLQDTHDNLNFTPIEEKIN
FT                 YITEIINDLPITEIRKILRLTENRINHREQQLKQSNVLLTQVQNTYNDAVN
FT                 ETDNLSKKNDNTNEESSSTEL"
FT   CDS           2337..5591
FT                 /product="I-2_NVi_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H, C-terminally truncated."
FT                 /translation="MEDTIQGNPNKCKIKNNLKILQWNCRSISNKTDFIKN
FT                 IADNYDIILLSETWLSDQKKFTIKNFNMVRRDRAENNNNLNKEHGGGVCIL
FT                 VKSXLIFEEYKPLYNSPESLETVAVTVHLNNEEEILISSIYRVPGKVTTAE
FT                 EWYKFFQSIDKIKYKIIGGDFNAHNLLWGSTNNCKTGENLLEIIDDKDLII
FT                 LNDGSMTYSKVVNNNITFSAIDLTIVSSDLFLQSHWKTLDDKMYSDHYLIE
FT                 IEINKDIKICPTASSHKIKTKSINWTNFNLLVEAIVDTQYPIDQFHEFSNK
FT                 PIDEKYNILMNILISAINELKPKPKKSHNKEKINEINNPSDDNSTMNNHPC
FT                 YKVYSPLITDNRTQFIKNKLKASHIPQSIKPPWWNEEAEEINNTRKNLEKS
FT                 LKQNPSLEQLKELKDYEIESKFKLKEIKLNSFKKYTETKLSREANINEVWE
FT                 TIHKFNEKKRNNPIYLDSETINNMHQFISDFCPQTASYNQPPGSIENIEAE
FT                 INSDIDSPFNLKELTIAIESCNKKSSPGLDQIDNIMLNNTPNNYRALLLHT
FT                 INDIIASGRFPREWKEFLVMLLPKKEKNKFRPITLAPCMLKLAEKLIQTRL
FT                 IYYLESNALLPDSQNGFRKAKSCATSIAYLIAQIHKAFIENSHIITLLIDI
FT                 KSAFDMVNPNMLQNILEDLKIPIKTRTFIFNLMTNRNLYFEINHKLVGPFY
FT                 RHIGVPQGCVLSPTLYLIYVIYLNRHINPKNNIIQFADDTIIFTNNKSVEE
FT                 GLXTLQNNTSEIINFFQSIGLDIAPNKTQLIIFSNKNIDPNISITINGHKI
FT                 KNEQAVKYLGVWLDSKLNWNTHAQNLIEKIQKTINIIKVLRTTWWGGHPQV
FT                 LLNVYKGLVRSITDYNCFCINIKNPKLREKINKLQYKAIRLALGYRNSTPI
FT                 NVMLAESKEVPITTRTEYLADKLAVKIISIESDRLSNMLCELFVLARNKNK
FT                 IFTVSSFPLFKSFIHYFYHRGHFIKKFNLPLPYPYKLETMLNDKEDEIISI
FT                 KEGSIIQKSENPNTAFEEMFYNNPSEETVDFFTDGSKTEDKNHTGAAIYSP
FT                 YNNLEKKFKFNKIASIFTAEAFAIFLKN"
XX
SQ   Sequence 5845 BP; 2438 A; 1203 C; 807 G; 1391 T; 6 other;
     ggagtacggt tcgagatgcc atagtgcacg gacgcgtttt ttttgcagct agtttcttga        60
     tacttataaa taacggaatt caggcaaata cttgactggc gaagaagacg aaacggtgtt       120
     tatacgtcca aagggattag atatagaaac ttctgattgc tgaaaccaaa aaggcccgct       180
     aaagcgggcg caacccccaa cataacctgc acctgcgtgt gcggttaatc gaaaaaatgg       240
     gagatcaccc acaaaatctt ccgagagtgc taagaccacc tcggacgtat gctacttctg       300
     gccttaagct taataatagg cataacaccc gcgttactac gaaagagtct ataggcgaaa       360
     acaaaaatgg tctgaatcca aagaggaact cactgataca agcaagactt aaccacacta       420
     aaagttcgaa caacttagat caaattaaca caacagccaa aggtgatgac ctaaaggata       480
     caaaaatgga aactgaagac atatcgctcg aagaaatcga aaagattatc catacaccaa       540
     atgacaataa aaccctaata cagagtcaac cgataacaga gacaaacacg agcagcttag       600
     accagcgcaa tcacgaatcc cagaacacgt cgcacgaaaa ctcaaaagct gacagtgaaa       660
     ggaagagacc tgccgaattt agatcgccag agtcatcatc ccccaacaat caaagattca       720
     agaaaaaacc ttacaacgac aatgctagaa aaaatctatt caatgaccac tctttaccga       780
     ccgatcccaa tgataacaga aatgataaag atttaccatc agagtacgac attaacatac       840
     aaggaccata caaaatctac ctacaatcaa ttgacaatga tagactagat gctataaaga       900
     ttgctaaatc cctaattcca aaaattgaaa tcaaagactc cttacatgaa ataaaacaat       960
     taagctataa taaagtttgt gttatagcca aatatagaaa tatagccaac cttatcttaa      1020
     acttgacaga ttggaaggat ctaaaaatcc gtgcgttcat cccaaaccat ctgctttcaa      1080
     agcaaggaat cattaagggt attccagtag aaataactga tgatgaatta aaacagttca      1140
     tcgaattaga ctctcctttt ggtccactcc agatcacaca cacacgaaga ttcacgaaaa      1200
     agatatacaa caaatcaacc gataaagtag atatcctccc aacaaaaaca gttcaaataa      1260
     cagtgaaagg acaatttcta ccggcagagg ctaaggtctt aaaagtaatt tacccaattg      1320
     aaacatacta cccgcaagta agacaatgct acagatgctt tagatttggt catatcaaaa      1380
     acaattgcaa agccccaaat gaaagatgca tcagatgcgg tgaaccaaaa catacagatg      1440
     gaaatgaatg tccatacatt aacacacaac ctacatgttt acactgtaaa caaaaccacc      1500
     tcccaattga caaaagttgt cctgcaaaaa ttgaagagca aaacctaaaa aacatggcaa      1560
     cagatcaaaa cattacaata gccgaattaa aaaaccaatt aagaaaaawg cctgcgtata      1620
     acaaatcaca ttttccaacc attggtaact cctcacaacc aacgcaagct cagacagaca      1680
     cactaaaaaa taccatgtat gcggataaag taaaatccta ctccaaacag ccaaggaacc      1740
     atcctactca accttcagtg gaaccaacag atagggggtc tacccaatca gtaggtcata      1800
     accatcaact cacccaatcc ccctctcaaa aatcaaaaaa caacaacttt actcccaact      1860
     ttagattggc aaaacagcac acggattgtt tgtcatatgt aaatggcaac accaatctaa      1920
     aaatcaaacc aatcaatcat agaatgacag cgaaagactt ttttgatcac agttatcttc      1980
     aagacactca tgataattta aatttcacac caatagagga aaaaattaat tatattactg      2040
     aaattattaa cgacttacca ataactgaaa tccgaaaaat cttaagacta actgaaaata      2100
     gaatcaatca cagggaacaa caattaaaac agtcaaatgt actgttgaca caagtccaaa      2160
     atacctataa tgacgcagtt aatgaaacag ataatttaag caaaaaaaat gataacacta      2220
     atgaagaatc aagctccaca gagctttaaa caaacacgta aatcgaacta atagcaattc      2280
     catgcttata aatgwttttc gacatctaat tttcaatctt aaattatawt taaaaaatgg      2340
     aagatacaat tcaaggtaat ccaaacaaat gtaaaatcaa aaacaatctt aaaatccttc      2400
     aatggaattg ccgctcaatt tcaaataaaa ctgatttcat caaaaatata gccgacaact      2460
     acgacataat tcttctctca gagacatggc tctcagacca aaaaaaattt acaataaaaa      2520
     acttcaatat ggtaagaaga gatagagcag aaaacaacaa caatttaaat aaagagcatg      2580
     gtggaggagt ctgtattctc gtcaaatcaa wcctgatatt tgaagagtat aaaccattat      2640
     ataacagccc ggaaagttta gaaacagttg ctgtcacagt acatctcaac aacgaagaag      2700
     aaatattaat cagttcaata tacagagttc ctggaaaagt taccacagcg gaagaatggt      2760
     acaaattctt tcaatcaatt gataaaatca aatataaaat aattggtgga gattttaatg      2820
     cacacaattt actatgggga tcaacaaaca actgtaaaac tggagagaat cttttagaaa      2880
     ttatcgacga taaagacctt ataattctta atgacggttc aatgacctac tccaaagtag      2940
     ttaacaataa cataactttt tctgctatag acttaacaat agtatcatca gacttatttc      3000
     tccaaagtca ctggaaaacc ctagacgata aaatgtacag tgatcattac ctaattgaaa      3060
     tcgagattaa caaagacata aaaatatgcc ctacagcatc aagccataaa ataaaaacaa      3120
     agtctattaa ctggacaaac ttcaacctac tagtagaagc tatagttgac actcaatacc      3180
     ctatagacca atttcatgaa ttttcgaata aaccgataga tgaaaaatat aacatactaa      3240
     tgaatattct aataagtgcc ataaacgaac taaaacctaa accaaaaaag tcacacaaca      3300
     aagaaaaaat aaatgaaata aacaacccca gtgatgacaa ttctacaatg aataaccatc      3360
     catgttataa agtatactcc cctttaataa ccgataacag aacccaattt attaagaata      3420
     aactaaaagc atcacatata cctcaatcaa taaaaccacc ttggtggaat gaggaagccg      3480
     aagagattaa taacaccagg aaaaatctag aaaaaagcct gaaacaaaat ccatcgttgg      3540
     aacaactcaa agaactaaag gactatgaaa tagaatcaaa attcaaacta aaagaaatta      3600
     aattaaacag ttttaagaaa tatacagaaa ctaaactgtc tagagaagcc aacataaatg      3660
     aagtctggga aaccatccat aaatttaacg aaaaaaaaag aaataaccca atatacttag      3720
     actcagagac aataaataac atgcaccaat tcatctcaga cttttgcccg caaacagctt      3780
     cttataatca acccccagga tctatcgaaa acatagaggc cgaaataaat agtgacatcg      3840
     acagtccatt taatttaaaa gaactgacaa tagcgattga gtcatgcaac aaaaaatcta      3900
     gccctgggtt agaccaaata gacaacatta tgctcaacaa cactccaaac aactatagag      3960
     cgctgctttt acacaccata aatgatataa ttgccagcgg aaggtttcca cgagagtgga      4020
     aagaattcct ggtaatgcta ctacccaaaa aagaaaaaaa taaattcaga cctatcacat      4080
     tagctccatg tatgctaaaa ctagccgaaa aactcataca aacmcgatta atctactacc      4140
     tagagagcaa tgcactctta cccgattctc aaaatggctt cagaaaagct aagtcatgcg      4200
     ccactagtat tgcttatcta atcgctcaaa tacataaagc ttttatagaa aattcgcata      4260
     ttattacatt gctgatagac attaagtctg ctttcgacat ggtcaatccg aatatgttac      4320
     aaaatatact ggaagatctt aaaataccaa ttaaaacaag aacattcata ttcaacctaa      4380
     tgacaaacag aaatctctat tttgaaatta atcacaaact agtgggaccc ttctacagac      4440
     acattggagt cccccaaggc tgcgttctaa gcccgaccct ctacctcatt tatgttatct      4500
     atctcaaccg acacattaat cctaaaaaca atatcataca attcgcagac gacacaataa      4560
     tatttacaaa caataaatct gtagaagaag gcctagstac attacaaaac aacacaagtg      4620
     agattatcaa ctttttccaa tccataggac tagatatagc tccgaataaa acacaattga      4680
     tcatcttctc caacaaaaat atagatccca acatatctat caccataaat ggacataaaa      4740
     ttaaaaatga acaagctgtt aaataccttg gagtatggct cgactccaaa ctaaactgga      4800
     atacacacgc acaaaatctt attgaaaaaa tacaaaaaac tataaatatt ataaaagtct      4860
     tgagaacgac ttggtgggga ggacatcctc aagtactcct caatgtctat aaaggtttgg      4920
     ttagaagcat caccgattat aactgtttct gtataaatat caagaatcca aaactaagag      4980
     aaaaaatcaa caagctacaa tacaaagcaa tcagattggc actaggatat agaaactcta      5040
     cacctatcaa tgtcatgctg gcagaatcca aagaagtccc cataacaacc agaacggagt      5100
     acttagcaga caaactagcg gtcaagatca tatcaataga atcagataga ctttctaaca      5160
     tgctctgcga attatttgtc ctagcaagaa ataaaaacaa aattttcacc gtaagctctt      5220
     tccctttatt caaatcattt atacactact tttatcacag aggtcacttt atcaaaaaat      5280
     ttaacttacc acttccttac ccatacaagc ttgaaacaat gctaaatgac aaagaggacg      5340
     agatcatctc aataaaagaa ggttctatca tacaaaaatc agaaaacccc aatactgcat      5400
     ttgaggagat gttttataat aacccatccg aagaaacggt tgactttttt actgacggtt      5460
     ctaaaacaga agacaaaaat cacacaggag cagcaattta ttcaccatac aataatctcg      5520
     aaaaaaaatt caaattcaac aaaattgcat ccatatttac agctgaagca tttgctattt      5580
     tcttaaaaaa ttaaaaaaaa acaaatcaac aattccttta gacttgaaaa aaacatttaa      5640
     aatgcctaac agcatagaag caaaatttct aacagaattt ttcaaagcct gtaatttagc      5700
     tttataatca aaaatttaca cattatgtag atgatttcac ctgacttatt ctataagatg      5760
     taacagaaaa accacggtgc tgatcaataa tcggcctcga gataccttac tgccaaacca      5820
     aaaacaaaat cgccgccaac tacaa                                            5845
//
ID   I-2_PPo     repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-331
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3112-3112 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..243
FT                 /product="I-2_PPo_1p"
FT                 /translation="NKFGWLVKKVNSPNCSECRVIEDVQHVVLECVRNERF
FT                 RLNYFKGYGCNVGHLNTILAYPSTDEAGMVFKLADICLRKQSVN"
XX
SQ   Sequence 331 BP; 103 A; 51 C; 79 G; 98 T; 0 other;
     aacaagtttg gatggctagt taaaaaagtt aattcaccca attgcagtga gtgtagggta        60
     attgaagatg ttcagcatgt tgtattggag tgtgttcgga acgagcgttt tagactcaat       120
     tattttaagg gttacggatg taatgtcggt cacttaaaca ctatcctggc ttacccgtct       180
     acggacgagg ccgggatggt gtttaagttg gccgacatct gtttaagaaa acagtcggtt       240
     aactaagttt tgtttgttta agacttatgg ggcgttatcg tcgcttcgcg acaaagcccc       300
     ctgtaaaaat aaataaaaaa aaaaaaaaaa a                                      331
//
ID   I-2_RPr     repbase;    DNA;    INV; 4000 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4000
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3460-3460 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus. 5'-end uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..3561
FT                 /product="I-2_RPr_1p"
FT                 /translation="MWGGHRENLEGRALAELIDSYNLCTLNDGSPTMIPRP
FT                 GARAQPVDITLCSPDLMSELSWEVIQEPLGSDHLGILVKSFNGRQATSGAR
FT                 IRHPKAGGWNLSKADWEKYRMVLDLKFSTSESTSCTYDYLTQEIRSAALGS
FT                 IPRFPQWLYLNPNRAIKPWWDDDCNRVKQESIIAYESYKRAPTLENYVNLN
FT                 RKLAISRRTYKEKKRIMWYEFCNSLDRQTPSNVIWKRIRSLKKGYSPQVEV
FT                 TDDGHWVEEFHKSLTPDYASQFIDLSNIPIGDEDLNXPFQLWELKYALKKG
FT                 GSTSPGQDGIHYQMLQNLPFPALLSLLRIMNEMWVGGAMIESWRTHLIFPL
FT                 LKPGKDPNSYQSYRPIALSSCVCKTYERMIKHRLDWWVEEYNKLAPHQLGF
FT                 RRHRGTLDCLAAFVNEVHLNRTENKPLLAAFVDIHKAYDNVNIAILKDKML
FT                 VMQVPGRVIVNIINMLQQRQLIIRRGVLVTGPRTTGIGLPQGAVLSPLLFN
FT                 IYTSDLRDWLVPEIRIVQFADDFTVYTGGKSEENLVEIMGQALHDLNAWCN
FT                 HLGFRISGNKSSVTMFSRKRQNILAGTIQLGPFKVSQSPIVKVLGLYVDHK
FT                 LTWRPHIKRIIQSCEKALNVLRYVAHVTYGTDPKIALLLYRNLILSKIDYG
FT                 CGIYGDACQTSLSGLDKVQYKAIRICLGAMRSTPTNVLLVEAKIMPLHIRR
FT                 ELLLGKFLSKRLIKFKEVSLMRVSELSEVVRSHRFWLKKKTPLMCEMFRVT
FT                 EKLYSGLEVLHASPRRSLHYEVSCKESPYVHLDLYDKVKEEWGDLTYLAFI
FT                 ARMREIIINPYLLFTDGSKSEQGVGCAVLDPQTGSFRLYKLPNNASIFTAE
FT                 IVAIWNAVILAEQIQSNDIIVILSDSKSALQKIKRPGDVFDPIIIEIISHL
FT                 INAMGRLHLVWLKGHAGIVDNEKVDVLAKRAILLGEHTPVLNLADFEGALR
FT                 KRCYDAWQKLYDLEKEIKGKYYADLQPRIPNKPWFVEVLEGERQFYTTIMR
FT                 LRFNHNLTNPHLHKIKLLDSPKCDCDSGEDGDIDHLLFRCSRYNRNRDKFL
FT                 KELATHVRFPCSAKSILAIMNPDALRIIYKFIRENKIKI"
XX
SQ   Sequence 4000 BP; 1272 A; 741 C; 895 G; 1090 T; 2 other;
     cacgttgtca gagacgatcg tgaggatgga tatggtggaa gtgccatatt tatcagtaaa        60
     aaattgcctt tcgacccaat agtgctgaat aatccattaa ggggcagagt tcagatatgt       120
     ggggctaaaa tcctatttag gagcgtcagt attacggtcc ttagcactta ctgccgtcct       180
     gggcataaag cctcagtaga ggaatggagt aatgtactaa atcaggtttc gggtcctctt       240
     attcttggtg gcgactttaa tgcgcttcat ccaatgtggg ggggacatcg ggaaaaccta       300
     gaaggacgag ctctagcaga gttaatagat tcgtacaatc tgtgtacatt aaatgatggg       360
     tcgcccacta tgattccccg accgggggct cgagctcaac ctgtggatat aactttatgt       420
     tctccagatc tgatgtctga gctcagttgg gaagtaatac aagagccctt gggttcggat       480
     cacctgggaa ttctggtgaa gtcatttaat gggcggcagg caacctctgg tgcacgcatt       540
     aggcacccta aggcaggagg ttggaatctc agtaaggcgg attgggaaaa gtatcggatg       600
     gtactggatt taaaattcag tacatcggaa tccaccagct gcacttatga ttatttgact       660
     caagaaataa gatcagcggc cttaggatcc attcctagat tcccacaatg gctttattta       720
     aacccaaatc gagcaatcaa gccttggtgg gatgatgatt gcaatagagt caagcaagag       780
     tcaataatag cctacgaaag ctataagaga gcacccacct tggaaaatta cgtcaattta       840
     aacagaaaac tagcaatcag tcgtcggacg tacaaagaaa aaaaacgaat aatgtggtac       900
     gaattttgca atagtttaga tagacaaact ccctctaacg tcatttggaa gcgaattcga       960
     agtctaaaaa aaggttactc tccccaagta gaagtcactg atgatggcca ttgggttgaa      1020
     gaattccata aatctctgac tccggactat gctagccagt ttatcgacct atcaaatatc      1080
     ccaattggtg atgaggactt gaatcngcca ttccaattgt gggaattgaa gtatgctcta      1140
     aaaaaaggag gtagtacatc gcccggccaa gacggtattc actatcaaat gctacaaaac      1200
     cttccatttc cggccctttt atcgcttctt agaattatga acgaaatgtg ggttggggga      1260
     gctatgattg aaagttggag aacccattta atatttcctc tcttaaagcc tggtaaagat      1320
     cccaactcgt accagtcgta tcggccaatt gctttatcgt cctgtgtgtg caaaacgtat      1380
     gaacggatga taaagcatag gttggattgg tgggtggagg aatataataa gctggcccca      1440
     catcagctgg gttttagaag gcaccgtggc acattagatt gtctggcagc gtttgttaat      1500
     gaagtgcact taaatagaac ggaaaacaaa cccttattag cggctttcgt agatattcat      1560
     aaagcatatg ataacgtaaa tatcgcaata ctaaaggata aaatgttggt aatgcaagta      1620
     cctggcaggg taatagtaaa tataattaat atgttacaac aaagacaatt aattattaga      1680
     aggggagttt tggtaacggg tcccagaaca acaggcattg gtctccccca aggtgccgtg      1740
     cttagccctt tgctatttaa tatatataca tctgatttga gagactggct cgttccggaa      1800
     atcaggatag tccagtttgc tgatgatttc actgtataca ctggaggaaa atccgaagaa      1860
     aatttggtag aaataatggg acaggccttg catgatctca atgcatggtg caaccacttg      1920
     ggttttcgca tttctggaaa taagagctca gtcaccatgt ttagtagaaa gcgtcagaac      1980
     attcttgctg gcactataca gctagggccg tttaaagttt cgcaatcgcc aatagttaag      2040
     gtcttaggac tttatgtaga ccacaaatta acttggagac ctcacattaa gagaataatc      2100
     caaagttgtg aaaaagcatt gaatgtgctt agatatgttg cacatgtcac atatggtacc      2160
     gacccaaaaa tagcccttct gctttaccga aatttaattt tatctaaaat agattatggt      2220
     tgcggtattt acggagatgc ctgccaaact tcactatctg ggctggacaa ggtccagtac      2280
     aaagcaatac gcatttgtct gggagctatg agatcaactc ccacaaatgt tctccttgtg      2340
     gaggctaaaa ttatgcctct acacatacgt cgagaattat tgttgggaaa gttcttaagc      2400
     aaaaggctaa ttaagtttaa ggaagtttcc ttgatgagag tctcagagct ctcagaagtg      2460
     gttcgctcac acaggttttg gttaaaaaag aaaacgccat taatgtgtga aatgtttaga      2520
     gtaacggaga aattatactc tggcctagag gtgttgcacg cgtctcctcg nagatctctt      2580
     cactatgaag tatcttgtaa agaatctccg tacgtccatt tagatttata tgataaggtg      2640
     aaagaagaat ggggggattt aacataccta gcttttatag cgcgcatgag ggaaatcata      2700
     atcaaccctt atttactatt tacggacgga tcaaaatcgg agcagggagt aggttgtgct      2760
     gtacttgacc cgcaaacggg aagttttcgc ctatacaagc tccctaataa tgcctcaata      2820
     tttaccgcag aaatcgtagc gatttggaat gcggtaatcc tggcggaaca aatacaaagt      2880
     aatgacataa tagtcattct tagtgattct aaaagtgcac tccaaaaaat aaaacgtccg      2940
     ggcgatgttt ttgatcccat aattatagaa attataagtc atttgattaa tgcaatgggt      3000
     aggttgcatc tggtttggct gaaagggcat gctgggatag ttgataacga gaaagtcgac      3060
     gtgctagcaa aaagagcgat cttgttaggg gaacatactc cagtgctcaa tttagcggat      3120
     ttcgaaggtg ctttaagaaa gcgttgttat gacgcatggc aaaagctcta cgatctggaa      3180
     aaagaaatta agggtaaata ttacgctgat ttacagccta ggattcccaa caagccatgg      3240
     tttgtagaag tactggaggg ggaaaggcaa ttttacacaa caataatgcg actgaggttc      3300
     aaccataatc tcacaaatcc gcatctgcat aaaattaagt tattagatag tcccaaatgt      3360
     gattgcgata gcggggagga tggggacatc gatcacctcc tcttcagatg cagcagatat      3420
     aatagaaata gagacaagtt cctaaaggaa ttggcaacac atgtacgatt tccctgtagc      3480
     gctaaaagta ttttagctat aatgaatcct gatgcgctac gaattattta caaattcatt      3540
     agagagaata aaataaaaat ataggatgca gctaaactcc atagttgcga ttttagttct      3600
     taattactca cacaagtact atcataacta cactactaat tacaccactc taagctcaca      3660
     tcaaataacg aagtcacatt cagagaccat tgtgttgttc taggaaggaa tgtcagtacg      3720
     cagcgctcaa gatatcctta tctcatggaa gccacgacgc agaatgtagt agaagagtgg      3780
     ctggcatgac gaagaaagaa gggaaagagg ctgcgctatt cctcaaattg aatattggaa      3840
     aagatagggc tggttttttt ccaccaacat attggtaaat tgaggcgctg ggagccaact      3900
     gtaattgttc atgccaatat gttggttttt tccagccctc atataaagta attggttaat      3960
     gtgcaaacaa gaccactata acaataaata aataaataaa                            4000
//
ID   I-3B_CQ     repbase;    DNA;    INV; 6358 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   An I non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6358
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 108-108 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98% identity.
CC   This family is ~94% identical to I-3_CQ, but transposes as a
CC   different subfamily from I-3_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           600..2264
FT                 /product="I-3B_CQ_1p"
FT                 /translation="MDPTESDHEESDFDSTLEGDEDVEMEDSVPGVPSNTT
FT                 NRDHFLKDEDAGGKGGSSXGSKRTKRKRPKSDPNPVPPQPPIPPLTPDPIP
FT                 PLTPDPIPPLTPEPIPPNPDPIPPKTPVPNPDPNPPPPLNPHSQKPIPRPR
FT                 QYQEGSQTEWVVFFRPKQKPLNFVQITKDLQKHYPGVVECTKLNKSKLRVI
FT                 VNSAVQANQIVTDLRFSIEYRVWIPAHKVEIDGVVTDDGLSLVDLSRAVGR
FT                 FKNPKLPAVEVLECRQLGNVTTEGGQKKFIPSASFRVTFAGSALPDYIELY
FT                 KLRLPVRLYVPRVMSCENCQQLGHTKTYCSNKSKCSKCAGPHKDVDCQKQA
FT                 EKCLLCGGEPHKTRQCPKYKEREDKMKRSLRERSKKSFAEILSQVTHPNRF
FT                 APLADEDSGDEXSDVEVLFQRDEESDSSGPNPKRNKASKSRKAAGGKGKES
FT                 DSLNFEEDFPFGPSGKPAPKPAPKPAPIPLKPLKPVPKLPKIPLKXVPQPN
FT                 PITDAFKGVLXFSTIVEWLCSFVSEPTRLIIKRFEPLARHIGKQLASTMPL
FT                 LSFISFDG"
FT   CDS           2260..5958
FT                 /product="I-3B_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDC
FT                 DVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRKCHTFRKVT
FT                 LPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRL
FT                 VLGDFNLHSTEWGSHKTDPQAYLIHELCDDFQMTLLNRDKQVTRIATPPTP
FT                 TTSGTKASAIDLSLCSNSLAVLCDWNVLQDPRGSDHLPIAILVSHGPQQST
FT                 TVEMPYDLTRNIDWKQYAEAVSIGVELRXGLAPLEEYAFLANLIYDSAXQA
FT                 QTKPVPGPYIRTRPPLPWWDKECTDLSAARSEAYVDFCKCGIRANFQKYRA
FT                 LDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVE
FT                 KSDKWILDFAKKVCPDSVPTQPSFDVVDGSDXNPPFSMVELSIALLTGNNT
FT                 APGPDKIKFSLLKNLPDVAKQRLLNLFNTFVEQNVIPHEWRQVRVVAIQKP
FT                 GKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRG
FT                 KGTSDCLALLATGIDIARGKKQQMASVFLDIKGAFDSVSIXVLGVKLRRSG
FT                 LNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLSPSMYNFYVS
FT                 DIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGI
FT                 EFSPEKTELVVFTGKHEPPQLNLSLSGKTIEQSDHFMYMGTIFDQKGTWGK
FT                 HINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFCFQ
FT                 XAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSY
FT                 RFLIRCDYRNKLVIDNFETLLNLHVESRRMLLYYDFMSSWEWSPSTTVQRT
FT                 PPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTD
FT                 GSKLDGCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDH
FT                 YFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTLNNLAAQSFSITVVWVRA
FT                 HCSIPGNEKADLLAKKGAESGDIFERPISLQECYGFPRQRALLDWQNQWDD
FT                 DTKGRWMYSIRPKVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRIN
FT                 MSDTNLCDCGQGYQDIDHLVWACPDHQAHRIKLKDTLRARGRPPEIPMRDA
FT                 LSQLDLDVLYPIYQFLSDSKISI"
XX
SQ   Sequence 6358 BP; 1556 A; 1680 C; 1640 G; 1470 T; 12 other;
     cattgctccg gcagaagtct cagcgsgtag tcgtgttttt ttcgcggtgt gtttggcgcg        60
     tttttcacgg cgattccgag gcgtgtgcga gcggacaagc ccgttccggt ggtcagagag       120
     gccacaatct ggtcgtcgtg gacacggcgg cggtgcagcg gcggagaagg aacgagttcc       180
     cgtatccgag cagcagcagc aggaggagtg agcagcagcg gctgcggagg cagctgaggc       240
     gagagacggt cgttggccgg tggaatcggc cccggagagt cgactgcggt cggcggacca       300
     gttttcggcc aggccaggtc ggagacaacc cccgttgttt acgtggctgg cagcaggcag       360
     cccacaacaa caacaacaag cgcgcgcaaa cgagcttccc gcgcatcccg ctgcgggcgg       420
     cagccagtgc ggccagttcg gcggtgagtg cgaaaggcga gttttttgtt agcgtttagt       480
     tttttttttc tcatagtttt ttttttttcg gttagttttt ttttctttct ccttttttac       540
     ttttgcgatt agtttcatca ctttcgtttt cgtttagttt atcgcgtttc tccgcaaaca       600
     tggatccgac cgagtcggac catgaggaat ccgacttcga ttcaaccctt gagggtgacg       660
     aggacgtgga aatggaggac tctgttccgg gagttccttc aaacaccacc aacmgggacc       720
     acttcctgaa ggatgaggat gctggcggta aagggggatc ctcggwcggg tctaagagga       780
     cgaagcgaaa gcgtcctaaa tcagatccga atccggttcc ccctcaacca ccgattcctc       840
     ccttgactcc agacccgatt cctcccttga ctccagaccc gattcctccc ttgactccag       900
     aaccgattcc tcccaatcca gatccaattc ctcctaaaac accggtgccg aatccggatc       960
     caaatccccc cccgcccctg aatcctcatt ctcaaaaacc gattcctcgt cctcgtcagt      1020
     atcaagaggg atcgcaaacg gaatgggtgg tcttcttccg gcccaaacag aagccgttaa      1080
     actttgtaca gatcaccaag gatttgcaga agcactatcc tggggtggtc gaatgtacca      1140
     agctgaacaa gagcaagctc cgcgtgatcg tgaactccgc ggtgcaagct aatcagatcg      1200
     taactgatct gcggttcagc attgagtacc gtgtttggat tccggcccac aaagtcgaga      1260
     tcgacggcgt ggtgaccgat gacggtctgt cgcttgtcga cctctcaagg gcggtgggac      1320
     gcttcaagaa ccctaaactt ccagctgtgg aggtactcga gtgccggcaa ctgggcaacg      1380
     tcaccaccga gggtggccag aagaagttca ttccttctgc ctcgttccgg gtgacttttg      1440
     cagggtcagc tctgccggac tacattgagc tgtacaagct tcggcttcca gttcgattgt      1500
     acgttccgcg agtgatgagc tgcgaaaact gccagcagtt gggacacacc aagacctact      1560
     gcagcaacaa gagcaagtgc tcaaagtgcg ccggccccca caaggacgtg gattgccaaa      1620
     agcaggctga aaaatgcctg ctttgtggcg gggaaccgca caaaactcgg cagtgcccaa      1680
     agtacaagga gcgcgaggac aagatgaagc gatccttgag ggaacgctcc aagaagtcct      1740
     tcgcggaaat ccttagtcag gtgacccacc ccaatcgctt cgctcctttg gcggacgaag      1800
     attcggggga cgaggawtcc gatgtggagg tcctcttcca gagagacgag gaaagtgact      1860
     cttccgggcc aaacccgaag cgcaacaagg cttccaagtc cagaaaagcc gctggcggca      1920
     agggtaagga aagtgactcg ttgaacttcg aggaggattt tcctttcggt ccgtcgggta      1980
     agcccgctcc gaagccggca ccgaagccgg caccgattcc tctcaagccg ctgaagcccg      2040
     ttcccaagct gccaaagatc cccctaaaam cggttcctca accgaatccg atcaccgatg      2100
     ccttcaaagg agtccttmct ttttccacaa tcgtggaatg gctgtgctct tttgtgagtg      2160
     aaccgacgcg tttaatcata aagcggtttg agcctctcgc tagacacatc gggaaacagc      2220
     ttgctagcac gatgcccctc ttgtcgttca tttcctttga tgggtaatac accaaaaacg      2280
     aaaaacggca tctcctttct acaatggaat tgtagaagtt taacccccaa gttaaacgat      2340
     tttcaacaat tcgcattcga acgggactgt gatgtgtttg cgctgagcga aacgtttctt      2400
     atcggagatg agacgccagc tttccggggg tacaacatca tcacagagag cagggcagga      2460
     ccaaatagag gtggaggcgt actgattggg gtcaggaaat gccacacttt tagaaaggtc      2520
     acgctcccga agctaggagg aatcgaagca gtcgcagtac aggccaggat cagaggactg      2580
     gacatttgca ttgtgtccgt ctatgttccc ccacaggtgt cgttaactcg acaaaagttg      2640
     tggggtatgc ttgagctgtt gcaggcaccg cgactggttc tgggtgactt taatcttcac      2700
     agcaccgagt ggggaagtca caagacagac cctcaagcat atctgattca tgaactgtgc      2760
     gacgacttcc agatgaccct cctaaacagg gacaagcaag ttacgcggat tgcaacacca      2820
     ccaacgccaa ctacgtccgg tacgaaggcg agtgccatcg acttgtcgct ctgttccaac      2880
     agtctggcag ttctctgtga ctggaacgtg cttcaagatc ctcgtggcag tgatcatttg      2940
     ccgatcgcta ttctggttag ccatggccca cagcaatcga caacggtgga gatgccttac      3000
     gatctgacgc gaaatatcga ctggaaacag tacgcggagg cagtctccat tggagttgag      3060
     ttgcgagmtg ggttggcacc gcttgaagaa tatgcgtttc tggctaattt gatctatgac      3120
     agtgcgwtac aagctcagac gaaacccgtc ccgggaccat acatccgaac gcgccctcca      3180
     cttccctggt gggacaagga gtgtacggat ctctcggcgg ccaggtctga agcttatgtg      3240
     gacttctgca agtgtggaat ccgagcgaac ttccaaaagt acagagctct tgatcgcagg      3300
     tacagtaata ctctgaagcg gaagaagcga atgtactggc gggagttcgt tgaaggacta      3360
     ccagcagata cgtccatgag cactctgtgg cgcgttgcga gggccatgcg tagaggttcc      3420
     gttccgaacg agagtgtgga aaaatcggac aagtggatat tggatttcgc caagaaggtg      3480
     tgcccggact cggtgccgac acaaccatca ttcgacgttg ttgatgggag cgatkctaat      3540
     cctcccttct cgatggtaga gctctccata gcactattga cgggcaacaa cactgctcct      3600
     ggtccggaca agatcaagtt cagcttgctg aagaatcttc cggacgtcgc caagcagcgt      3660
     ctgttgaatc tgttcaacac gttcgtggag cagaacgtaa ttccacacga atggcgacag      3720
     gtccgggtgg ttgccattca aaagcccggt aagccggcgt ccgaccacaa ctcgtatcgt      3780
     ccaatcagct tgctgtcgtg tctacgcaag ttgctggaga agatgatcct cgaccgcctc      3840
     gaaccatgga tggaacgaga gcacttgctg tcagacacgc agtatggctt ccggagaggc      3900
     aagggaacaa gcgactgtct agccttgctg gccacaggaa tcgacatagc ccgtggtaaa      3960
     aaacagcaaa tggcttctgt cttcctagac atcaagggtg cattcgattc agtctccatc      4020
     gakgtgttgg gagtaaagct gcggcggagc ggtctcaatc cgacgatgtg caacttcctc      4080
     atcaacctgt tgtcagaaaa acacatgcac tttgtgcaag gtgatctggc aatcacccgg      4140
     ataagttaca tgggtttggc acaaggctca cgccttagtc catccatgta taacttctac      4200
     gtcagcgata tcgatgattg cttgaccgga gactgcaccc ttatacagta cgcagatgac      4260
     gcagtggttt caatcgctgc caagaaggaa gtcgatctgc tagaaccctt gcaagatacc      4320
     ctgaacaact tggcccattg ggcagttgga aagggtattg aattctctcc ggagaagacg      4380
     gaactggtcg tttttacggg gaagcatgaa ccgccgcagc tcaatctttc tctctcggga      4440
     aagactatcg agcagtcgga ccacttcatg tacatgggta ccatctttga tcagaaggga      4500
     acatggggga agcacattaa ctacctgaag caaaagtgcc tgcaaagaac taattttctg      4560
     cgcagcgtct ctggcaaccg gtggggtgct catccttctg acctgcttcg actgtacaag      4620
     acaacgatac tctcggtgct ggaatatggc agtttctgct tccaawcagc tgcgaaatca      4680
     cgcttgttgg ttctccagcg gatacagtac cgaagtcttc gcattgtctt gggwtgcatg      4740
     cactcaactc acaacatgac cctcgaggtc ttggcgggag tgttgcctct gcgaactcgt      4800
     tactacgaac tgtcttaccg gttcctgatc cggtgtgatt acaggaataa actggtaatt      4860
     gacaactttg aaacgttgct gaaccttcac gttgagtctc ggcgcatgct tctatattat      4920
     gactttatgt catcgtggga gtggagcccg agcacaacgg tacagcgcac gcctccgtta      4980
     accagcagca ccctgattgg cttcgacacg tccatgaaag ccgatactcg cggtatccca      5040
     aaccatcttc tgcggggagt tgtaccgtcg atcttcgcat caaagtacaa ccatgttcct      5100
     ccaaacaaca gattcttcac cgatggctcc aagctcgacg gctgtacggg cttcggtgtt      5160
     tatcatgaat cttatcagct gttctttaag ctgaaggacc cgagttcggt ttacgtcgca      5220
     gagttagccg cggtttactg cgcactgcga atcatcgaga ccatgccacc tgaccactac      5280
     ttcatcttca ccgatagctt tagctctgtt gaggctatcc ggtctctgaa gccgaccagg      5340
     gagtctgcgt ttttcctcac ggaaatacgc aagactttaa acaacctggc ggctcagtcc      5400
     ttcagcatca cggtggtgtg ggtccgcgct cattgctcga ttccgggtaa tgagaaagcg      5460
     gacttgctcg ccaagaaggg tgctgagagt ggagacattt ttgaaaggcc aattagccta      5520
     caagaatgct acggttttcc gaggcagcgt gcgcttctgg attggcaaaa tcaatgggac      5580
     gacgacacca aaggacgttg gatgtattcc atacgaccta aggtgcaaag aaaagcctgg      5640
     ttcaagggaa tggacttgac gcgtggattc atcagaacga tgtcccgcct tatgtcgaac      5700
     cattactcgt ccaaggctca tctgtaccgt atcaacatga gtgatacgaa cctttgcgac      5760
     tgtgggcagg gttatcagga catcgaccat ctcgtatggg cgtgtccaga tcaccaggct      5820
     cacagaatta agttgaaaga taccctcagg gcccgaggaa gaccaccaga aatcccgatg      5880
     cgagacgcgc tatctcaact agaccttgat gttctctatc ctatctatca gttcctctca      5940
     gattccaaaa tatctattta gttttcttcc agttagtttc ccttcagtta gttttcctct      6000
     agttagtata actcgccttc gcacaaagcc gtcgtttctg gttgcaccgg aagcaaagca      6060
     agatcgcccc agcagctgga caccgagttg cggctgagga caaaacgcaa aggccagcag      6120
     agccaaccaa gacccctaca caatccccct tcccatccca cgccttgtct ttaacatcaa      6180
     tcccttccct actaaccccg agtaggccgc gggtaatcgg ctcccctccc actaacattt      6240
     acacacaaga tcctctgtaa ttattaagtc aaatgtaatt acaaaagccg actcggtcct      6300
     aaccaggtcc cagtaccgaa aaggacctaa taaaaataat tttatgaaaa aaaaaaaa        6358
//
ID   I-3_BTa     repbase;    DNA;    INV; 5921 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5921
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 696-696 (2018).
XX
DR   [1] (Consensus)
XX
CC   probably one copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1737
FT                 /product="I-3_BTa_1p"
FT                 /translation="MDKPTTSQSSQQPVPDTSSTPVNHPSSPRVLFYNDKC
FT                 SAPFILHIAKNPSADRIPHIHPLQLSSILRRSEVQGVEHVTKVNRSTSQVS
FT                 FKTRYDANSFLANHKLDRSKYTVFIPKYKVLKKGVLKDIPTEYTEDEISDM
FT                 LETDFEVYEIKRMYRFNKSEHRKVPLPLVTITFLSNTLPETVKLDYYIAHV
FT                 DLYINRGTQCYNCFHYGHLQKFCKGKKRCEQCGRPAHESDECPEKSPKCIN
FT                 CQGSHQPTDINCPTRKQSLKVNGIMAESNVSYKEALSMRDSYSDNYKFGIR
FT                 RSAASVTRNLPKTVTRNRFTTLQEECFPPLKPSNPDASPAANRKKTNNSSI
FT                 STKAMRKKKRNNEEFPTEWVNRLKLKDATTSVTPKKQSDEEEANLQQISVN
FT                 ETHNSAEGLLFVGSQVDASLNMMDTDFSPPSPPLGSPTPQQLSNSDKHCED
FT                 TFKDNDFNVLVNDQHKSDQ"
FT   CDS           1880..5698
FT                 /product="I-3_BTa_2p"
FT                 /translation="MTTTLNLLSWNIHSLRANGFDLNDLLRSLQPDIFLLS
FT                 ETWLKPADQIKTKTYITYQQHRSDGWGGLLSGAKNFWAFAEVPELSHKSLD
FT                 VTDVQVLTIKIMDKVDRKKSVFLINVYATTKYKGNFDPLNAILDKLSGKDV
FT                 IISGDFNSQHPTWGYPNADRKGDHLMNIFNDHGFFVCNSINPTPTRITPPS
FT                 QEPSFTDLIVVSNSLASTSNMDVLNIPMGSDHLPIKVTISLNISPNRSSDP
FT                 VTPSPITTINWRKFTKIVDNQFSSIDETSDKSYYKWANVIKSSLESAKTTY
FT                 QPKPHAPPHQIAKHERWWSVKCQKAKNIRDQSLKKYKQTGLYEDLMLYRAN
FT                 CNKFKHAVREAKRESWAKYCSSLNSNTPLNELWAKLKTQRLAKDPVRSLDD
FT                 NWIPAFQNKLTPVYVDEAPPSFDCENEQPLLFSYQFFNHTLQTMAKRTPGK
FT                 DRITAKLLKTLPTSAKTYLYEVFQKVINEGNPPEEWNEVIIKPIKKPNKPE
FT                 GEPTSYRPIALLSIVRKTYEKILRHFVEEHVERYDLLSPHQFGFRKHHSLF
FT                 DNHNILNREILEALANKEELKVVLLDVEGAYDAVHIPTLIKIMKRMKFNQR
FT                 IINSVYLLFGRKTVYVHFNKTEHGPRTSCLGFAQGSVLSPLLYLIYTSSLH
FT                 KKLRHSKILEFADDILVYIRSKNDQISSALLQEDLNSLHRGLEILNLPVST
FT                 AKSKTITFSRRRNLQITPIMINNSIIPQVNELIYLGLVYDRKFTWHAHVTH
FT                 ISSKLARNTNLVKMLSGVKWGTHPSYSKILFNGLIYSITDFGIQFYYNKKT
FT                 AERLSVIINQCVRRIFGFLRSTPTNAMYVESGIPPIAFRAGYITDKFILKN
FT                 FNFNLPSKKQTMMKLEQLVADNSPVVRQNTPLLLQRLKTISHLTTQVEAAN
FT                 SRSYFFRSYCHNSAINLQLPIAKKEDLDTVQRFKEFIQENKSISFIYTDGS
FT                 KTKDYTSAGVYSPNLNLQRSLLLNKHLTILNAEIRALFDATVFLNESRIQE
FT                 AAICTDSMGAIQAISNVRKPTDNQDLLDIRNFLLLHPKIILIWTPGHENIS
FT                 GNEEADKLTKDLTKATDLRKEKIHYSNFLPVIHRMMMSDWQTEWTKSAQTK
FT                 GARLYGIQDIDLRKEKIHYSNFLPVIHRMMMSDWQTEWTKSAQTKGARLYG
FT                 IQDIVSTTPWFANIWLPKDVTNTISRIRLGHGVFPAHMKRINLKDSDLCRC
FT                 GEVGTLDHILLQCQHLNNLQDFFNQHVKSNYSLPTNSALILSNTSKENYIM
FT                 LSKFLRSNKIVI"
XX
SQ   Sequence 5921 BP; 1909 A; 1588 C; 982 G; 1442 T; 0 other;
     tctcgagaaa cctatccgct ctcccttcat cggtatttta ttggattagt gcaactaata        60
     gccataaatg gtgttaagtt tgcttccata ataattattg gtggaatctc ccttcggata       120
     actttatttc cctggtttaa ttcccccctt tgagtgtttt attagtgaag tgtgtcttgt       180
     gacttgtgcc ttaccgcgtc tccaagatgg cgtcgcctct tttaaagtac tcagaactag       240
     attttcaatc ttacatagat cgacaaaaat catcatcggc cctccatccg gttgggttca       300
     caccaaagtt cgactagcgt aaactcgacc caacaaattt ttcagatgga caagcctacc       360
     accagtcaat cctctcaaca accagtgccg gatacttcgt cgaccccagt gaatcatcct       420
     agttccccgc gtgtgttgtt ttacaacgac aagtgctccg ctccgttcat cctccacatc       480
     gccaaaaatc cctcagcgga tcggattcca catatccatc ctctccagct ttcctccatc       540
     ctccggagat ccgaagtaca aggagttgag catgttacta aagtcaatag gagcacgtcg       600
     caggtctctt tcaagaccag gtacgatgcc aacagcttcc tagccaatca caagctggac       660
     cgctccaaat atactgtttt catccccaaa tacaaggttc tgaagaaagg tgtcctcaag       720
     gacatcccta ccgagtacac agaggatgaa atcagcgaca tgctagaaac tgactttgaa       780
     gtttacgaaa ttaagaggat gtacagattc aataagtccg aacaccgaaa agtcccgcta       840
     ccactagtca ccataacctt tctatcaaac accctccctg aaacggtgaa gctagactac       900
     tacatagccc atgttgatct ctacatcaat agaggtaccc agtgctacaa ctgtttccac       960
     tacgggcacc tccaaaagtt ttgcaaaggt aaaaaaaggt gcgaacagtg cggaagacca      1020
     gctcacgaat ccgatgagtg cccagagaaa tcccctaagt gcattaactg ccaggggagc      1080
     caccaaccca ctgacatcaa ctgcccaact agaaaacagt cccttaaagt aaatgggatt      1140
     atggccgaat ccaatgtcag ctataaagaa gcgctcagta tgagagattc gtacagcgac      1200
     aattataagt tcggcatccg cagatctgca gcttcagtca caaggaatct acctaagaca      1260
     gtgacaagga atcgatttac tacccttcag gaggagtgct ttcccccctt gaagccctca      1320
     aacccagatg cctcccctgc cgccaacagg aaaaagacca acaatagctc catttcaacg      1380
     aaagctatga gaaaaaagaa acgtaataat gaagaattcc ccacagaatg ggtgaaccgc      1440
     ctgaaactaa aagacgcaac aacttctgtt actcccaaaa agcaaagtga cgaagaagaa      1500
     gctaatctac aacagatttc agtaaatgag actcacaata gtgcggaagg ccttctattt      1560
     gtaggctccc aagtcgatgc ctccttgaac atgatggaca cggatttctc tcctcccagt      1620
     ccaccactag gaagccctac accccagcaa ttaagtaact cagacaaaca ctgtgaagat      1680
     acctttaaag ataacgattt caacgtatta gttaatgacc agcataaatc tgatcagtga      1740
     cccaccaatt tatacactac ccaaaggtaa ctttctaata atttaatcca aactatctaa      1800
     tcctctactc ttaattactc aactactcaa aactctgcaa acactataat actttaacct      1860
     tataaatccc gctcctacaa tgacaacaac cctaaattta ttgtcatgga atattcacag      1920
     ccttcgagca aatggatttg acctgaatga tctactccga tcccttcaac ctgacatctt      1980
     cctactctca gagacctggc ttaaaccagc tgatcaaatc aaaactaaaa catatattac      2040
     gtaccagcaa catagatcag atggctgggg aggccttctt tcaggggcca agaatttctg      2100
     ggccttcgct gaagtcccag aactaagcca taagtccctt gatgtcaccg acgttcaagt      2160
     cctcaccatc aaaataatgg ataaagtaga caggaagaag tccgttttcc ttatcaacgt      2220
     ttatgccacg accaaataca aaggaaactt cgatcctctc aacgccatct tagacaagct      2280
     ttcaggcaaa gatgttataa tctctggaga cttcaattcc cagcatccta cctggggcta      2340
     cccaaacgcc gacaggaaag gtgaccatct catgaatata tttaacgacc atggtttctt      2400
     tgtttgtaac tccatcaacc ccacccccac cagaattact ccaccctctc aagaacccag      2460
     cttcacagat ctgattgtag tcagcaactc tctggcttct acatccaaca tggatgttct      2520
     caacatccct atgggcagcg accacctccc aataaaagtc accatttcac tcaacatcag      2580
     ccctaatcgt tccagtgacc cagtgacacc ttctcccatc actactatca actggagaaa      2640
     attcacaaaa attgtagata accaattctc ttctatcgat gaaaccagtg acaagtcgta      2700
     ctacaagtgg gccaatgtca tcaaatcatc attggagtcc gcaaaaacta cttatcaacc      2760
     caagccccac gctccgcctc accaaattgc caaacatgag cgatggtggt ccgtcaaatg      2820
     ccaaaaagct aaaaacatca gagaccaatc cctcaaaaag tacaaacaga ccggtctata      2880
     tgaagatctc atgttgtata gagccaactg caataaattt aaacatgccg tccgagaggc      2940
     taaaagagag agctgggcta aatactgctc atccctcaat agcaacactc ccctcaacga      3000
     actctgggca aaactcaaaa ctcaacgact ggcaaaagat ccagtaagaa gtctggatga      3060
     taactggatc ccagcattcc aaaataaact cactcctgtc tatgttgacg aagccccccc      3120
     atccttcgac tgtgaaaacg agcaaccatt acttttttcc tatcagttct ttaaccacac      3180
     cctacagact atggctaaaa gaacacctgg caaagataga attacagcca aactcctgaa      3240
     aacgcttcct accagtgcaa agacatactt gtatgaagtg ttccaaaaag tgataaatga      3300
     aggcaaccct cctgaagaat ggaacgaagt gattatcaag ccgataaaaa aacccaataa      3360
     gccagaagga gaaccaacat cctaccgccc gatcgcattg ctatccatcg ttagaaaaac      3420
     ttatgagaaa attctcagac actttgtcga agagcatgtt gaaagatatg acctcctatc      3480
     tccccatcag tttggtttta ggaagcatca ctctcttttc gacaatcaca acatcctcaa      3540
     ccgagagatc ctggaggctt tagccaacaa agaagaactc aaagttgttc tactggatgt      3600
     agaaggggca tatgatgccg ttcatatccc aacccttata aaaataatga aacgtatgaa      3660
     atttaatcaa cgcatcatca atagtgtcta tctcctattt gggcgaaaaa cggtgtacgt      3720
     tcacttcaat aaaacagaac acggaccaag gacctcatgt ctaggcttcg cccaaggttc      3780
     agtccttagc ccccttttgt acctaatcta caccagcagc ctacataaga aactccgcca      3840
     ctccaaaatc ttagaatttg cagatgacat ccttgtatac attagaagta agaatgatca      3900
     gatttcctca gccctactcc aagaagatct caactccctc catagaggcc ttgaaatcct      3960
     aaatctccca gtctccaccg ccaagtctaa aacaataacc ttctccagaa gaagaaattt      4020
     gcagatcact cctattatga ttaataattc cataatccca caagtaaatg agctgatcta      4080
     cctaggcctt gtatatgaca ggaagttcac gtggcatgcc catgttaccc atatttcctc      4140
     taaactggcc cgcaacacca atctggtcaa gatgctttca ggggtcaaat ggggcaccca      4200
     cccgtcttac tctaaaatcc tcttcaacgg cctcatctac tccattacag actttggcat      4260
     ccaattttat tataataaga aaactgctga gcgcctttca gtaattatta accagtgcgt      4320
     cagaagaatc ttcggcttcc tacgatctac ccctaccaat gcaatgtatg tagaaagcgg      4380
     catccctcct attgcattcc gagctgggta tataaccgat aaatttatcc tcaaaaactt      4440
     caacttcaac ctcccttcta agaagcaaac tatgatgaaa ctggagcaac tggttgcgga      4500
     caattcccca gtcgtaaggc aaaatacccc tctcctccta caaagactta agactattag      4560
     ccacttgact actcaagttg aggcagcaaa cagccgctca tatttctttc gttcttattg      4620
     tcacaactca gccatcaacc tccaactccc cattgcgaaa aaggaagatc ttgacacagt      4680
     ccagcgcttt aaagaattca tccaagaaaa caaaagcatc agttttatct atacggatgg      4740
     ctctaaaaca aaggactaca catcagcagg ggtttatagc ccaaacctaa atctccagcg      4800
     ctctctcctt cttaacaaac atttaactat cctcaatgca gaaatccgag cattattcga      4860
     cgccaccgtc ttcctcaatg aatctaggat tcaagaagct gccatctgca ctgactccat      4920
     gggagccatc caagcaatct ctaatgtccg aaaacctaca gacaatcagg acttactaga      4980
     cattagaaac ttcctgcttc tccacccaaa gataattctg atttggactc caggccacga      5040
     aaacatctct ggtaatgaag aggctgataa acttacaaag gacctaacaa aagctactga      5100
     tctccgtaaa gagaaaatcc attactccaa cttcctccct gtcatccaca gaatgatgat      5160
     gagtgactgg caaacagaat ggaccaaatc agcccaaact aagggcgcac gcttatacgg      5220
     aatacaagac atagatctcc gtaaagagaa aatccattac tccaacttcc tccctgtcat      5280
     ccacagaatg atgatgagtg actggcaaac agaatggacc aaatcagccc aaactaaggg      5340
     cgcacgctta tacggaatac aagacatagt ctccactacc ccctggttcg caaatatttg      5400
     gctacctaaa gacgtcacta acacaatttc acgaattcgc ctagggcatg gagtctttcc      5460
     tgcccacatg aaaagaatta accttaagga ctcagattta tgcaggtgtg gcgaagtagg      5520
     aaccctggat cacatcctcc tccaatgtca acacttgaac aaccttcagg actttttcaa      5580
     ccaacacgtt aaatctaact actctctgcc tacgaactct gctctaattt tgagcaacac      5640
     ctctaaggaa aactacatta tgctcagcaa gttcctccgc tccaacaaaa tagttatcta      5700
     agcgtcttaa tacatcgatt atcagtgaag tgaatcagtg aagtgatacc ccctcctttt      5760
     tcaagaactt tcacttccac caataattat taaagtgcac cgcacggata tataaaacac      5820
     ctaaaccact ctagatcttc agcatccaac ttgtcagtgg ctgtttgtgc taggcactaa      5880
     ggccaagccc tcatacgggc gaatcttata aacaatagaa a                          5921
//
ID   I-3_CQ      repbase;    DNA;    INV; 6457 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   An I non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-6457
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 109-109 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity. It is phylogenetically close to Loner elements in
CC   Anopheles gambiae.
XX
FH   Key           Location/Qualifiers
FT   CDS           641..2359
FT                 /product="I-3_CQ_1p"
FT                 /translation="MDPDEDQVEKMSESEDWDTDNEGEVDPLPGVPSNQTA
FT                 LELYGKDTKVVVKGTGGRKAKKRKSRLSPKPYPKPDPTSPPTQKPDPALPL
FT                 NPSPLVPTNPTPIPTNPTPPIPPNTNPIPPAPTPPIPPNPNPIPPAPTPPI
FT                 PPNPNPPGDKERPVQARARQYVGGSQTEWVVFFRPKQKPLNFVRITKDLHN
FT                 HYPGLVQCTKLNKSKLSVIVNSAEEANQIVKDIRFCVEYRVWIPAHKVEID
FT                 GVVTDDSLSLVDLSRAVGRFKNPKLPAVEVLECRQLGNVTTEGGQKKFIPS
FT                 ASFRVTFAGSALPDYIELYKLRLPVRLYVPRVMSCENCQQLGHTKTYCSNK
FT                 SKCSKCAGPHKDVECQKQAEKCLLCGGEPHKTRQCPKYKEREDKMKRSLKE
FT                 RSKKSFAEILSQANQSNRFAPLADDSGDEENEEEVLFRRDEESDSSGPNPK
FT                 RNKVSKSTKAAGGKGKESDSLNFEEDFPFGPSGKPAPKPTPKPAPIPLKPL
FT                 KPVPKLPKIPLKPVPQPNPITDAFKGVLPFSTIVEWLCSFVSEPTRLIIKR
FT                 FEPLARHIGKQLAXTMPLLSFISFDG"
FT   CDS           2355..5924
FT                 /product="I-3_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDC
FT                 DVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRKCHTFRKVT
FT                 LPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRL
FT                 VLGDFNLHSTEWGSHKTDPQAYLIHELCDDFQMTLLNRDKQVTRIATPPTP
FT                 TTSGTKASAIDLSLCSNSLAVLCDWTVLQDPRGSDHLPIAILVSHGPQQST
FT                 TVEMPYDLTRNIDWKQYAEAVSIGVELRAGLAPLEEYAFLANTIYDSALQA
FT                 QTKPVPGPYIRTRPPLPWWDKECTDLSAARSVAYVDFCKCGSPANFQRYRA
FT                 LDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVE
FT                 KSDKWILDFAKKVCPDSVPTQPSFDVVDGSDSNPPFSMVELSIALLTGNNT
FT                 APGPDKIKFSLLKNLPDVAKQRLLXLFNTXVEQNVIPHEWRQVRVVAIQKP
FT                 GKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRG
FT                 KGTSDCLALLATGIDIARGKKQQMASVFLDIKGAFDSVSIDVLGVKLRRSG
FT                 LNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLSPSMYNFYVS
FT                 DIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGI
FT                 EFSPEKTELVVFTGKHEPPQLNLSLSGKTIEQSDHFMYMGTIFDQKGTWGK
FT                 HINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFCFQ
FT                 SAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSY
FT                 RFLIRCDYRNKLVIDNFETLLNLHVESRRMLLYYDFMSSWEWSPSTTVQRT
FT                 PPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTD
FT                 GSKLDGCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDH
FT                 YFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTLNNLAAQSFSITVVWVRA
FT                 HCSIPGNEKADLLAKKGAESGDIFERPISLQECYGLPRQRALLDWQKQWDD
FT                 DTKGRWMYSIRPKVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRIN
FT                 MSDTNLMRLWAGLSGHRPSRMGVSRSPGSQN"
XX
SQ   Sequence 6457 BP; 1602 A; 1717 C; 1645 G; 1489 T; 4 other;
     cattctcctg tcaaactcgg tacgagtcgg tcgtgttgac gagttgtctc ttacgcgagt        60
     tttttagcgc gatatttcgg cgttttcgac ggcgatttcg ccgttccggc ggcgcccttg       120
     caggtggtgc gaggcaccac gttttggacg cagcggacac ggcgacggcg cagaagcggg       180
     cggcggttcc ccaaggcagc ttcccgagtt cccgctaccg tgaggcggca gcaggaggag       240
     ggcgcgcggc ggcagacgcg cgggcggaga cgagcggtgg tcgcaggagg cggccccgga       300
     gagtcgactg cggtcggcgg accagttttc ggccaggcca ggtcggagac aaccccggtg       360
     tttgtgtgtg gctggcagca ggcagcacaa caacaacaac aagcgcgcga aaacgagctt       420
     cccgcgcatc ccgctgcggg cggcagccag tgcggccagt tcggcggtga gtgtgaaagg       480
     cgagtttttt gtttgctttt agtttttttt ttttcttttc tcatagtttt tttttgttag       540
     tcatattttt tttctcttct tccttgggtt ttttttttct ttttcgcgta aatcttgatt       600
     agcttttgta ttagtttttc tttcgttttt cattccaacc atggatccgg atgaggacca       660
     ggtggaaaaa atgtccgagt ccgaagactg ggacacggac aacgagggtg aagttgatcc       720
     tctcccagga gtgccttcta accaaaccgc gttggaactc tacggaaagg acaccaaggt       780
     cgttgtgaag ggcactggcg ggcgcaaagc gaagaaacgc aagtctcgac tgtctccgaa       840
     accataccca aaacctgatc ccacttcccc tccaacacaa aaaccggatc cagctcttcc       900
     actgaatcca agtcctctgg tcccaacaaa tccaactcct attccaacga acccaacccc       960
     tccgatcccg ccaaatacga atccaattcc accggcacca acccctccga ttccgccaaa      1020
     tccgaatcct attccaccgg caccaacccc tccgatccct ccaaatccaa atccaccagg      1080
     tgacaaggaa agaccagttc aagctcgcgc tcgccagtac gtggggggct cgcagacgga      1140
     gtgggtggtc ttcttccggc ccaaacaaaa accccttaac ttcgttcgga tcacaaaaga      1200
     tctgcataac cattatcctg ggctggtaca atgtactaag ctgaacaaga gcaagctcag      1260
     cgtgatcgtg aactccgcgg aggaagctaa ccagatcgtg aaagacattc ggttctgtgt      1320
     cgagtaccgt gtttggattc cggcccacaa agtcgaaatc gacggcgtgg tgaccgatga      1380
     cagtctgtcg cttgtcgacc tctcaagggc ggtgggacgc ttcaagaacc ctaaacttcc      1440
     agctgtggag gtactcgagt gccggcaact gggcaacgtc accaccgagg gtggccagaa      1500
     gaagttcatt ccttctgcct cgtttcgggt gacttttgca gggtcagctc tgccggacta      1560
     cattgagctg tacaagcttc ggcttccagt tcgattgtac gttccgcgtg tgatgagctg      1620
     cgaaaactgc cagcagttgg gacacaccaa gacctactgc agcaacaaga gcaagtgctc      1680
     aaagtgcgca ggcccccaca aggacgtgga atgccaaaag caggctgaaa aatgcctgct      1740
     ttgtggcggg gaaccgcaca aaactcggca gtgcccaaag tacaaggagc gcgaggacaa      1800
     gatgaagcga tccttgaagg aacgctccaa gaagtccttc gcggaaatcc ttagtcaggc      1860
     gaaccaatcc aatcgtttcg cccccttggc agatgattcg ggggacgagg aaaacgagga      1920
     ggaagtcctc ttccggagag acgaggaaag tgactcttcc ggaccaaatc cgaagcgcaa      1980
     caaggtttcc aagtccacaa aagccgctgg cggcaagggt aaggaaagtg actcgttgaa      2040
     cttcgaggag gattttcctt tcggtccgtc gggtaagccc gctccgaagc cgacaccgaa      2100
     gccggcaccg attcctctca agccgctgaa gcccgttccc aagctgccaa agatccccct      2160
     aaaaccggtt cctcaaccga atccgatcac cgatgccttc aaaggagtcc ttcctttttc      2220
     cacaatcgtg gaatggctgt gctctttcgt gagtgaaccg acgcgtttaa tcataaagcg      2280
     gtttgagcct ctcgctagac acatcgggaa acagcttgct ascacgatgc ccctcttgtc      2340
     gttcatttcc tttgatgggt aatacaccaa aaacgaaaaa tggcatctcc ttcctacaat      2400
     ggaattgtag aagtttaacc cccaagttaa acgattttca acaattcgca ttcgaacggg      2460
     actgtgatgt gtttgcgctg agcgaaacgt ttcttatcgg agatgagacg ccagctttcc      2520
     gggggtacaa catcatcaca gagagcaggg caggaccaaa tagaggtgga ggcgtactga      2580
     ttggggtcag gaaatgccac acttttagaa aggtcacgct cccgaagcta ggaggaatcg      2640
     aagcagtcgc agtacaggcc aggatcagag gactggacat ttgcattgtg tccgtctatg      2700
     ttcccccaca ggtgtcgtta actcgacaaa agttgtgggg tatgcttgag ctgttgcagg      2760
     caccgcgact ggttctgggt gactttaatc ttcacagcac cgagtgggga agtcacaaaa      2820
     cagaccctca agcatatctg attcatgaac tgtgcgacga cttccagatg accctcctaa      2880
     acagggacaa gcaagttacg cggattgcaa caccaccaac gccaactacg tccggtacga      2940
     aggcgagtgc catcgacttg tcgctctgtt ccaacagttt ggcagttctc tgtgactgga      3000
     ccgtgcttca agatcctcgt ggcagtgatc atttgccgat cgctattctg gttagccatg      3060
     gcccacagca atcgacaacg gtggagatgc cttacgatct gacgcgaaat atcgactgga      3120
     aacagtacgc ggaggcagtc tccattggag ttgagttgcg agctgggttg gcaccgcttg      3180
     aagaatatgc gtttctggct aatacgatct atgacagtgc gttacaagct cagacgaaac      3240
     ccgtcccggg accatacatc cgaacgcgcc ctccacttcc ctggtgggac aaggagtgta      3300
     cggatctctc ggcggccagg tctgtagctt atgtggactt ctgcaagtgt ggatccccag      3360
     cgaacttcca aaggtataga gctcttgatc gcaggtacag taatactctg aagcggaaga      3420
     agcgaatgta ctggcgggag ttcgttgaag gactaccagc agatacgtcc atgagcactc      3480
     tgtggcgcgt tgcgagggcc atgcgaagag gttccgttcc gaacgagagt gtggaaaaat      3540
     cggacaagtg gatattggat ttcgccaaga aggtgtgccc ggactcggtg ccgacacaac      3600
     catcattcga cgttgttgat gggagcgatt ctaatcctcc cttctcgatg gtagagctct      3660
     ccatagcact attgacgggc aacaacactg ctcctggtcc ggacaagatc aagttcagct      3720
     tgctgaagaa tcttccggac gtcgccaagc agcgtctgtt gaawctgttc aacacgttsg      3780
     tggagcagaa cgtaattcca cacgaatggc gacaggtccg ggtggttgcc attcaaaagc      3840
     ccggtaagcc ggcgtccgac cacaactcgt atcgtccaat cagcttgctg tcgtgtctac      3900
     gcaagttgct ggagaagatg atcctcgacc gcctcgaacc atggatggaa cgagagcact      3960
     tgctgtcaga cacgcagtat ggcttccgga gaggcaaggg aacaagcgac tgtctagcct      4020
     tgctggccac agggatcgac atagcccgtg gtaagaaaca gcaaatggct tctgtctttc      4080
     tagacatcaa gggtgcattc gattcagtct ccatcgatgt gttgggagta aagctgcggc      4140
     ggagcggtct caatccgacg atgtgcaact tcctcatcaa cctgttgtca gaaaaacaca      4200
     tgcactttgt gcaaggtgat ctggcaatca cccggataag ttacatgggt ttggcacaag      4260
     gctcacgcct tagcccatcc atgtataact tctacgtcag cgacatcgat gattgcttga      4320
     ccggagactg cacccttata cagtacgcag atgacgcagt ggtttcaatc gctgccaaga      4380
     aggaagtcga tctgctagaa cccttgcaag ataccctgaa caacttggcc cattgggcag      4440
     ttggaaaggg tattgaattc tctccggaga agacggaact ggtcgttttt acggggaagc      4500
     atgaaccgcc gcagctcaat ctttctctct cgggaaagac tatcgagcag tcggaccact      4560
     tcatgtacat gggtaccatc ttcgatcaaa agggaacatg ggggaagcac attaactacc      4620
     tgaagcaaaa gtgcctgcaa agaactaatt ttctgcgcag tgtctctggc aaccggtggg      4680
     gtgctcatcc ttctgacctg cttcgactgt acaagacaac gatactctcg gtgctggaat      4740
     atggcagttt ctgcttccag tcagctgcga aatcacgctt gttggttctc cagcggatac      4800
     agtaccgaag tcttcgcatt gtcttgggat gcatgcactc aactcacaac atgaccctcg      4860
     aggtcttggc gggagtgttg cctctgcgaa ctcgttacta cgaactgtct taccggttcc      4920
     tgatccggtg tgattacagg aataaactgg taattgacaa ctttgaaacg ttgctgaacc      4980
     ttcacgttga gtctcggcgc atgcttctat attatgactt tatgtcatcg tgggagtgga      5040
     gcccgagcac aacggtacag cgcacgcctc cgttaaccag cagcaccctg attggcttcg      5100
     acacgtccat gaaagccgat actcgcggta tcccaaacca tcttctgcgg ggagttgtac      5160
     cgtcgatctt cgcatcaaag tacaaccatg ttcctccaaa caacagattc ttcaccgatg      5220
     gctccaagct cgacggctgt acgggcttcg gtgtttatca tgaatcttat cagctgttct      5280
     ttaagctgaa ggacccgagt tcggtttacg tcgcagagtt agccgcggtt tactgcgcac      5340
     tgcgaatcat cgagaccatg ccacctgacc actacttcat cttcaccgat agctttagct      5400
     ctgttgaggc tatccggtct ctgaagccga ccagggagtc tgcgtttttc ctcacggaaa      5460
     tacgcaagac tttaaacaac ctggcggctc agtccttcag catcacggtg gtgtgggtcc      5520
     gcgctcattg ctcgattccg ggtaatgaga aagcggactt gctcgccaag aagggtgctg      5580
     agagtggaga catttttgaa aggccaatta gcctacaaga atgctacggt ttgccgaggc      5640
     agcgtgcgct tctggattgg caaaaacaat gggacgacga caccaaggga cgttggatgt      5700
     attccatacg acctaaggtg caaagaaaag cctggttcaa gggaatggac ttgacgcgtg      5760
     gattcatcag aacgatgtcc cgccttatgt cgaaccatta ctcgtccaag gctcatctgt      5820
     accgtatcaa catgagtgat acgaacctta tgcgactgtg ggcagggtta tcaggacatc      5880
     gaccatctcg tatgggcgtg tccagatcac caggctcaca gaattaagtt gaaagatacc      5940
     ctcagggccc gaggaagacc accagaaatc ccgatgcgag acgcgctatc tcaactagac      6000
     cttgatgttc tctatcctat ctatcagttc ctctcagatt ccaaaatatc tatttagttt      6060
     tcttccagtt agttttcctt cagttagttt tcctccagtt agtataactc gccttcacac      6120
     aaagccgtcg tttctggatt gcaccggaag caaagcaaga wcgccccagc agctggacac      6180
     cgagttgcgg ctgaggacaa aacgcaaagg ccagcagagc caaccaagac ccctacacaa      6240
     tcccccttcc catcccacgc cttgtcttta acatcaatcc cttccctact aaccccgagt      6300
     aggccgcggg taatcggctc ccctcccact aacatttaca cacaagatcc tctgtaatta      6360
     ttaagttttt tgtaattaca aaagccgact cggtcctaac caggtcccag taccgaaaag      6420
     gacctaataa aaataatttt atgaaaaaaa aaaaaaa                               6457
//
ID   I-3_DAn     repbase;    DNA;    INV; 5401 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5401
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 380-380 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1372
FT                 /product="I-3_DAn_1p"
FT                 /translation="MSRPPESRSTMINLLTSEPKYIIINRTDNETFEKINP
FT                 FIIKKVVDFTCNGAVETCKKTRAGLLVKTKNHIQAEKLLKIKFFHNFPVHA
FT                 EEHKTLNSSKGIIYSNDLRNIDEKEILEELKSQNVINVRKILKKDSNDTNK
FT                 TTETGLIVLTFSTITLPDKLWIGYEVVNIRPYIPPPMRCFNCLRFGHPSAY
FT                 CKSPKTCANCSENIHTINNEPCTKTQTCINCKYEDDKIKHHNAMDKSCPAF
FT                 IKQKELTAIKTTQKVDHKTARAIYNTRHTHPPIPYAQIAATPTQKTPAIET
FT                 HINSITTSKTNSSTPNTMTRQIITYDDSSEEHMDTSASTSLHAARSETSDG
FT                 LKLKIFANKSNKLSTSLKSKDKNNQKTKNDKQTKRKTSGDKYLMSTDEDLE
FT                 L"
FT   CDS           1435..5097
FT                 /product="I-3_DAn_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonulcease H."
FT                 /translation="MLKILQLNVNGYLNNYNHLQILIKKHNPKIISIQDTH
FT                 LHSTNNIPIPINFTIYHINNSNNPYGGVALLIHNSLQQQQTQIRNISFDSI
FT                 AVTVHSKIKFTIISSYIPPNKPFTLQELQDTYNYINTPILITGDFNSWHKS
FT                 WGSQYNNPRGNVLFKFINQSLLTTLNNGSPTHFTTHHTFTHIDLSLASPEL
FT                 YLHSKWTIENHLSGSDHFPITIQLFENISTDSSVIKPKFNIEKANWPLYQK
FT                 FSKQFSDDRPLSQQINQETAHLCAIIRHSAHLSIPQYHPNSPKQVPWWDTD
FT                 LQTLKTKKKLAWRNMCRNINTANIIAYKKANAILKREIKQKKRKALHEFTS
FT                 DINPQTPIPTIWKKINRFCGLKTNTQIHCLINPNNTTDTHTNKYDISKALC
FT                 EFWSNASLNNNFHPTFRSHKENLNYNFSHSTSALTQPLECDISIIELKSAI
FT                 NQLKGKTPGRDRISYPMIKNLPDSVMQRLLKLYNNILNAHIPQQFKVSNII
FT                 PILKPDSNKTEIPSYRPISLNSCLSKVMDKIISKRLWWLVNNSQLLDSHQM
FT                 GFRKGKSVSDSLATLDYLTTTTLSRKSHLSIISLDFSKAFDKIGIHTIIDE
FT                 LVEWKLGPKMIKYIINFLTNRKICVQTQNIQSQPLPLENGIPQGSPLSVIL
FT                 FAIAYNKINRIIGLHKSFKFTAYADDYTIIKIHNRRDSSININPLLTDIQE
FT                 WCNYSGACLSIPKSKYLHICRKKKCNFKVTSTINLKNEKSLKILGLTITNN
FT                 YKWDAHIDQLVMQISKRLNIIKCLSSTSFNCHIKTIIYVINSVIMSKIDYG
FT                 LFLYGKAPKSKLNKIKTIYHSAIRIALGAFRSSPINNLLYEANISTIEQRT
FT                 KHAILKNFKMISTSKKTPLEQIIKKISKKKRIPKLSSTLKDTIDQCNEIQL
FT                 YPIPITIRKETTPAWTYSVTKINKSLHTSTKPNTPPLVYQQKFQEMKDTLK
FT                 QHTFLYTDGSKTVSGVTYSVTSTHHIITQQILPPYSSIFTAEIAAILHACK
FT                 YAEKQVGKFAICTDSLSALTALENPNNSTYYILEIRKIIYRYKYKLVLIWV
FT                 PGHSGIMGNELADQAAKEALTMPLISEINYNLPDILKYISNHIKAQHDLIW
FT                 NNTSAHYKHINTKKQKNITLLKPTISRIDTIKFMRLRIGHTKLTHSHLFDK
FT                 TPPPICQQCNINLTLSHIFLECPTYIEHRRKFLQKTLEEIVDPTNITTTIQ
FT                 FLKSTNLYNNI"
XX
SQ   Sequence 5401 BP; 2211 A; 1333 C; 591 G; 1265 T; 1 other;
     cagcttcact ccgagcttca aagagtaaag acgtgcaact aacttacgct ccaagcaaca        60
     gcttatcagc ttaatagatc acccgatcca cagaaacttc gtgcctaatt acatttaaaa       120
     caacaaaata caaagaacta gtaaacttct ttacacattg cagggcccga gcccaaaaat       180
     caccgcaatg tcccgaccac ccgaaagccg gtcgactatg ataaacttat taacaagtga       240
     accgaaatat attattatca atagaaccga caatgaaacc tttgaaaaaa taaatccatt       300
     tattattaaa aaagtagtag atttcacctg caatggtgca gtcgaaactt gcaagaaaac       360
     cagagctggt ctccttgtca aaacaaaaaa ccacattcaa gcagagaaac tcctaaaaat       420
     aaagttcttt cacaatttcc ctgtccacgc tgaagaacat aaaactctga actcctccaa       480
     aggcataatc tactccaacg acctacggaa tatagacgaa aaagaaatct tggaagaact       540
     taaatcccaa aatgttatta acgtccgtaa aatactaaaa aaagacagca atgacacaaa       600
     taaaacaaca gaaacaggcc taattgtact aactttttca acaattaccc tacccgacaa       660
     attgtggata ggatatgaag tagttaacat acgtccatac attccgcccc caatgagatg       720
     cttcaactgc cttagatttg gacacccctc cgcctactgt aaaagcccta agacatgcgc       780
     caactgctcc gaaaatatcc acacaataaa caatgaacca tgcaccaaaa cccaaacctg       840
     tatcaactgc aaatatgaag acgacaaaat caaacaccac aacgcaatgg acaaatcatg       900
     ccctgccttt ataaaacaaa aagaacttac cgcaatcaaa acaacccaaa aagtagacca       960
     caagacagcc cgcgctatat acaacacacg ccatacacac ccacccatac catacgccca      1020
     aatagcagca actccaacac aaaaaacacc agctatagaa acacatatta actcaatcac      1080
     tacatcaaaa acaaactcat caacaccaaa cactatgacc agacaaatta tcacctacga      1140
     tgactcctct gaagaacaca tggacaccag tgcatcaaca tcattacacg ccgcacggtc      1200
     tgaaacttcc gacggactaa aactaaaaat attcgcaaat aaatcaaata aattaagtac      1260
     ctccttaaaa tcgaaagata aaaacaacca aaaaaccaaa aatgataaac aaaccaaaag      1320
     aaagacatct ggcgataagt atttaatgag tacagatgaa gatttagaat tataaaatta      1380
     taatcaaaat tattttagtt ctagttaacc ttaaccaata ttcttatact taacatgcta      1440
     aaaatattac aattaaatgt aaatggttac ctcaacaatt ataaccacct acagatactc      1500
     ataaaaaaac acaaccctaa aataatatcc attcaagata ctcacctcca ctctacaaat      1560
     aatattccca tcccaataaa cttcactatt taccacataa ataactcgaa caacccttat      1620
     ggcggagtag ctctcctaat ccacaactcc ttacaacaac aacaaaccca aatccgcaat      1680
     ataagctttg actcaatcgc cgtaacagtc cattctaaaa tcaaattcac tataatttct      1740
     agttatatac ctcctaacaa accattcact ctacaagaat tacaagacac ttacaattac      1800
     atcaacactc ctatcctaat aacaggcgat tttaacagct ggcacaaaag ttggggatca      1860
     caatataata acccgcgagg aaacgtatta ttcaaattta taaaccaatc ccttctaacc      1920
     actcttaata atggctcccc cacccacttc accacacacc acacctttac acatatcgac      1980
     ctctctctag cttcccctga actatactta cactctaaat ggacaattga aaaccacctc      2040
     tcaggtagtg accacttccc aatcacaatc caactctttg aaaatatatc aacggactcc      2100
     tccgtcatta aacctaaatt caacattgaa aaagccaact ggcccctcta tcaaaaattt      2160
     agtaaacaat tttccgacga cagaccactc agccaacaaa taaaccaaga aactgcccac      2220
     ctttgtgcca ttataagaca cagtgctcat ttatccatac cacaatatca cccaaactca      2280
     cccaaacaag tcccctggtg ggacaccgat ctacaaacac taaaaacaaa aaaaaaatta      2340
     gcctggcgaa atatgtgtcg caatattaat acagccaata taatagctta caaaaaggcc      2400
     aacgcaatac tcaaacgaga aataaaacaa aaaaaacgca aagccctgca cgaatttacc      2460
     tcagacataa atccacaaac tccaatccca acaatatgga aaaaaatcaa tcgattctgt      2520
     ggactcaaaa ctaacactca aatccattgt ctaattaacc ctaataatac aaccgatacc      2580
     catacaaaca aatatgacat ctcaaaagcc ctatgtgaat tctggtcgaa tgcatcactt      2640
     aataataact tccatcccac atttagatca cacaaagaaa acttaaacta caatttctcc      2700
     catagtacat ccgctctaac ccaaccctta gaatgcgata tttctattat tgaattgaaa      2760
     agtgccataa accaacttaa aggcaaaaca ccaggtaggg accgcatcag ttacccaatg      2820
     ataaagaatc taccagattc ggtaatgcaa aggctactta aactctacaa caacatcctc      2880
     aacgcacaca ttccacagca atttaaagta agcaacatta taccaatact aaaaccggac      2940
     tcaaacaaaa cagaaatacc ttcataccgt cctatatccc taaatagctg cctatccaaa      3000
     gtaatggata aaataatatc taaaagacta tggtggttag ttaacaacag ccaactactc      3060
     gatagtcacc aaatgggttt cagaaagggt aaatcagtat cagactctct agcaacgcta      3120
     gattatctga ctaccaccac cctatccaga aaaagtcacc tttcaataat ttcactagac      3180
     ttttcaaaag catttgacaa aataggaatt cacacaatca tagatgaact cgttgaatgg      3240
     aaattaggac caaaaatgat caaatatata ataaacttcc taaccaaccg aaaaatctgc      3300
     gttcaaactc aaaatataca atcccaaccc ttaccactgg aaaatggaat cccacaagga      3360
     tcaccattat ctgtaatcct ttttgcaatt gcctataaca agatcaatag aatcataggt      3420
     ctccacaaat cgttcaaatt tacagcatac gctgatgact atacaattat aaaaattcat      3480
     aatagaagag attcctcaat aaacataaac ccactgctca cagacattca agaatggtgc      3540
     aattactctg gagcctgtct ttctattccg aagtctaaat acctacacat ttgtcgcaaa      3600
     aaaaaatgca acttcaaagt aactagcact atcaacttaa aaaacgaaaa atcactaaaa      3660
     atactaggtt taactataac caataattat aaatgggacg cacacataga tcagctagta      3720
     atgcaaatat ctaaaagact aaacattata aaatgtctct ctagcacaag tttcaactgc      3780
     cacattaaaa ccattatcta tgtaatcaac tctgttatta tgtcaaaaat tgattatggg      3840
     ttatttctat acggaaaggc acccaaatca aaacttaaca aaataaaaac catataccac      3900
     tcagctatta gaatagccct tggggcattt cgctcctcgc caataaacaa cctgctttac      3960
     gaagctaaca taagcactat agaacaaaga actaaacatg ccatattaaa aaactttaaa      4020
     atgatttcca cctctaagaa aacccctcta gaacagataa ttaaaaaaat ctcaaaaaaa      4080
     aaacgaatcc caaaattatc atcgacacta aaagacacga tcgaccaatg caacgaaata      4140
     caactatacc ctatccctat aacaattaga aaagaaacca caccagcgtg gacctatagc      4200
     gttactaaaa taaacaaatc gttacatact tcaacaaaac caaacacacc accattagta      4260
     taccagcaaa agtttcaaga aatgaaagat accctcaaac agcacacatt cttatacacg      4320
     gacggctcca agaccgtcag tggagttacc tacagcgtaa cctctacaca tcacatcata      4380
     acacagcaaa tcctgccacc ttactcatca attttcactg ctgaaatagc agccattctc      4440
     cacgcatgta aatatgccga aaaacaagta ggaaaattcg ctatatgcac cgactctctc      4500
     tcagctctta cagcactaga aaacccaaat aactctacct actatatatt agaaattaga      4560
     aaaattatct atagatacaa atataaactc gtcctaatat gggtcccagg ccactccggc      4620
     attatgggca acgagcttgc agaccaagct gccaaagaag cactcacaat gccattaata      4680
     tcagaaatta actacaacct accagatatc cttaaataca tcagcaatca cataaaagcc      4740
     caacatgacc ttatatggaa caacacatct gcacactaca aacacatcaa tacaaaaaaa      4800
     caaaaaaata tcacactttt aaaaccaact atatctcgaa tagataccat taaatttatg      4860
     agacttcgaa taggacacac gaaactgaca catagccacc tttttgataa aactcctcca      4920
     cccatatgcc aacaatgcaa cattaacctt accctatcac acatattcct agaatgccct      4980
     acctacattg aacacagacg taaattcctc caaaaaactt tagaagaaat agtagatccc      5040
     acaaatataa ccacaactat ccaattccta aaatccacaa acctctacaa caacatatag      5100
     gcgcaacttt actgtacata actataataa attcacacat atataatata tgtacatata      5160
     taaactcgaa atgcatttaa gtaaattaat taattaagta agtgtaaata catttaagta      5220
     aaaaaaaaaa ccactatcgc cagaaatatc atattatata ccatcattgt tacataacac      5280
     ctattatata ktataaaaca gattttaagc agaaggccat tgtagctatt gcttaacaca      5340
     tagcaaaatt gcccgcactt tataattgtt ggcaatttct ttataataat aataataata      5400
     a                                                                      5401
//
ID   I-3_DBi     repbase;    DNA;    INV; 4867 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4867
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 927-927 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1537..2361,2465..4726)
FT                 /product="I-3_DBi_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="QIWGVALLIHKSIQHTQSNINEDVEAIAAEIKSKDNF
FT                 KIYSTYISPNKSFSRNNLNNVFNISNETVMITGDFNSWHQNWGSTHSNSRG
FT                 KTVAKFIEQSQLTLLNDKSPTHFTTHNTFTHIDLSFCSPSLTPLTTWNVID
FT                 DLFGSDHFPIILTLFPTDTIINKKTPIFKLSEANWDAFATHTHNNNNIYPP
FT                 STNINKETALINKIIIKSAHHAIPQTLPNRHSRTVPWWNKNLADLHIKKKQ
FT                 TWKALKRNTTQDTIIAYRKANAILKKEIKIRKRENTFSLQPHFNHYIPQSY
FT                 KTSLIIPILKPQKDKTSISSYRPISLNCCLSKTLDKIIANRLWWFLNNDKL
FT                 LHPHQFGFKKGKSTSDNLLYADHIITKSLNTRKHTSLISLDFARAFDRVGT
FT                 HAIIDQLIKWKCGHKIIKYIINFTKNRKITVRIGTHNSSIHPLENGIPQGS
FT                 PISVVLFLIAFNNLANILTRYKQIKFSAYADDFLLLVHLKNKKNININLNH
FT                 LFRKIEDWGSYSGASLSQTKCEHLHICRKHRCNCTITTQNSRIKNVDSLKI
FT                 LGLTINKKYNWNSHIDTLIPSLSNKLNIIKCLASPKFNCNTNTLLNITKAI
FT                 LISKIDYALHTYGYAPKNVLNKLKTTLNAALRAALGAFRTTPTYNLLYESN
FT                 IPTIEQRRDHLTTKLFKNLIRSRDTPIHKFIKPITRRKKWTSTLNRAIGNC
FT                 QLLNIPFQPTKLYKTKPPWQLQQNIINTSLHNYKKNNTSPETFQKLFNETK
FT                 QNYKNHTFIYTDGSQQNSTTAFAITTDTEILHYGNLPPYSSILTAEIIGIL
FT                 EAIKIATRKRGKFVICSDSLGAIEAIRNPQNRNKYPAHIRSQIQLKQPKIK
FT                 ILWTPGHSNIKGNELADKTAKEATKMPLIYTENENISDINKLLKNHLRQEN
FT                 ETLINKCNTWYKNINTNNTHISALSNITQEQITRIDQIKFIRLRLGHSNIT
FT                 HKHLLDPNTSRNCPLCQSTPVNMEHILDSCPAITQDKQLLFKDLKATDYLK
FT                 HPSAENIATIINFLKKTNLYNLI"
XX
SQ   Sequence 4867 BP; 2028 A; 1250 C; 582 G; 1005 T; 2 other;
     cagtttcact ccagacctca ttgagtaaag acgtgcagct acggcgatcc aaaatcacca        60
     aaaacagtgc ttatcagcaa aatttgcaac aacaaacaag tgaacaaaag agacacccaa       120
     aaaacaaaaa aaaacaacaa atagtcacgt gatcataaca accacaagca gggggttcgc       180
     cccacagaag caaaatgtta ccaccggaca aaaacaaact tttttctaaa aactcaataa       240
     ttgaacataa atttattgtt attaaaagaa aagacaattt atcactggaa aacacaaacc       300
     cattcattat aaaaaaatca atcgacttca tttgcggagg tgaagtggaa aaatgtaaag       360
     tacaagagca ggtacaattc taactcaaac taaaaacacc caacaagcts aaaaactact       420
     aaaaattaaa aaaaagtggt gaagttgacg tagaagcata cgaacacaaa agccttaacg       480
     agaccaaggg agtcatttac tgcaatctac ttagaaatgt ctcagaagag gaaattctag       540
     ccgaactgaa gtcccaaaaa gtttctcagg tctacaaatg gaccaagcta gtggatcaaa       600
     atcgtgtacc aacaggactt attacactta ctttcaactc aacaaatctc cctgaaaaag       660
     tgtttatagg ctatgaaatt gtgttcacac gcccgtacat accacgcccc atgcagtgta       720
     aaaaatgcct tcggttcaac cacccccaac ctggctgcaa gcaagataac cccacatgta       780
     aaaactgctc agaaaccacg cacaacaacg attgtaagca gcaaccaaaa tgcattaact       840
     gcaagggacc acacgtccac ggacaaaaaa tgcccaatct ttctcaaaga acaggagctc       900
     atagccatta gaataaccga aaaagtagac cacaaaactg cccgatccat atactttaca       960
     cgtcacaatc atacccaaga aacttcatac tcccaaaccc taaaaaatcc atcaccaaca      1020
     gaaaccccca ccagaccaac tgaaacacaa atacataata aaaacgacat ccataaaaaa      1080
     caaaactcac tagacgattt tcttaaagag ctggaaaata aatatgcaga ataaataaga      1140
     tagctcaaac ccctgcagcc tacgacacat tcgatgaaga aatgcgctca cttaccaatg      1200
     acgactctca aaaaccctca acatcaacaa acgaccgtgt acttagaagc caaactaaag      1260
     aaaaatccac cctatctaaa aatctaaaag ctaaagatca aagaccaaac ctttccagca      1320
     caaacgttat aaaacaaaca caaaagcttc aataattatg tccttaaaaa tattacaatg      1380
     gaatataaag ggatatttga acaactacaa ccaactacta atactcatca agacacactc      1440
     tccacatata atttcactcc aagaaacaca cattcaatac ttccacagcc taccgacacc      1500
     tataaactac aatatactaa caaacattgc atctaacaga tttggggagt agccctgcta      1560
     atccacaaat caatccaaca cacccaaagt aacattaatg aagacgtaga agcaatagca      1620
     gcagaaataa aatcaaaaga taactttaaa atatactcca cttatatctc acccaacaaa      1680
     tccttttcgc gcaataacct gaacaacgta tttaacataa gcaacgaaac tgtcatgata      1740
     acaggtgatt tcaacagctg gcaccaaaac tggggatcca cacactccaa ctcaagaggt      1800
     aaaacagtag ccaaattcat tgaacaatca caactcaccc tactaaatga caaatcacca      1860
     acacacttta ctacacacaa caccttcaca cacatcgacc tcagcttttg ttctccctca      1920
     ctgacaccac tgacaacctg gaatgtaata gacgaccttt tcggaagtga tcacttccca      1980
     atcatcctca ctctttttcc aaccgacacc atcatcaaca aaaagacacc catttttaaa      2040
     ttaagcgaag caaactggga tgcctttgca acccacacac ataacaacaa caacatatac      2100
     cctccctcaa ccaacataaa caaagaaacg gcactaatta acaaaataat tataaaaagc      2160
     gcacaccacg caataccaca aacactaccc aaccgacact cacgcacagt tccttggtgg      2220
     aacaaaaacc tagcagacct acacataaag aaaaaacaaa catggaaagc tctgaaaaga      2280
     aacacaaccc aggatacgat cattgcctac agaaaagcaa acgcgattct aaaaaaagaa      2340
     attaaaatta ggaaaaggga atgaattaac cattgctctc caatcactta aaggctcaac      2400
     accaggaatc aacagaatct catatcccat gataaaaaaa cagttcacca tcaatcaaaa      2460
     atagaatact ttctcacttc aaccacattt caaccactac atacctcagt catacaaaac      2520
     cagcctgatc ataccaatac taaaacctca aaaagataaa accagcatct catcctaccg      2580
     acccatctca cttaactgct gcttgagcaa aacactggac aaaataatag cgaacagact      2640
     atggtggttc cttaacaatg acaaactact acacccacac caatttggct tcaaaaaagg      2700
     caaatcgact tcggataatc tgctctatgc agatcacatc atcacgaagt ctcttaatac      2760
     taggaaacat acctcactca tctctcttga ctttgcaaga gctttcgatc gagtaggtac      2820
     acacgcaata attgaccaat taataaaatg gaaatgtggc cacaaaataa taaaatatat      2880
     cataaacttc accaaaaaca gaaagattac tgtccgaata gggacacaca attcaagtat      2940
     acacccgttg gaaaatggaa tcccacaagg atcccccata tccgtagtac tcttcctaat      3000
     agccttcaac aacctagcca acatcctgac aagatacaaa cagattaaat ttagcgcata      3060
     tgcagacgat ttccttttat tagtacattt aaaaaacaaa aagaacatta acatcaacct      3120
     aaaccacctc tttagaaaaa tagaagattg gggaagttac tcaggcgcat ccctgtcaca      3180
     aacaaaatgt gagcatctac acatatgtag aaaacatagg tgcaactgca ccattacaac      3240
     ccagaattct agaataaaaa acgtagattc actcaaaata ctcggactaa ccataaacaa      3300
     gaaatacaac tggaactcac atattgacac tctcatacca tcactctcca acaaacttaa      3360
     catcataaaa tgcctagcca gtcccaagtt taactgcaac acaaacactc tactaaacat      3420
     cacaaaagcc atacttattt ctaaaattga ctacgcactt catacttatg gatacgcccc      3480
     gaaaaatgta ctaaacaaat taaaaaccac actgaacgca gctctcagag cagccctagg      3540
     tgcgtttcgc acaacaccaa catacaacct actttacgaa tccaacattc caaccatcga      3600
     gcaacggcga gaccacctta caactaagct cttcaaaaac cttatccgtt ccagagatac      3660
     accaatacac aaatttatca aaccaataac cagaagaaaa aaatggacct caacactaaa      3720
     tcgagctata ggaaattgtc aacttctcaa catacccttc caaccaacaa aactgtacaa      3780
     aacaaaaccg ccatggcaac tacaacaaaa cataatcaac acctcgttgc acaactacaa      3840
     aaaaaacaac acctcacccg aaacattcca aaaacttttc aatgaaacaa aacaaaacta      3900
     caaaaaccat acatttatat acacggacgg atctcaacaa aattcaacta ccgcttttgc      3960
     tattaccacc gacactgaaa tattgcacta cggaaaccta ccaccttact cgtcaatcct      4020
     aacagcagag ataattggaa tcctcgaagc catcaaaatt gcaaccagga aaagaggaaa      4080
     gtttgtaatc tgttctgact ccttaggagc gatcgaagca atccgcaatc cccaaaaccg      4140
     caacaaatac ccagcacaca taagatcaca aatacaatta aaacaaccta aaataaaaat      4200
     tttatggacc ccaggacact ccaacattaa aggaaacgaa ctcgcagaca aaacggcaaa      4260
     agaagcaacg aaaatgccac ttatatatac ggaaaacgaa aatatatcag acataaacaa      4320
     acttctaaaa aatcacctga ggcaagaaaa tgaaactctt ataaacaaat gcaacacatg      4380
     gtacaaaaac atcaacacaa acaacaccca catatcagca ctttctaaca taactcaaga      4440
     acaaatcacc agaattgacc aaattaaatt tataaggctc cgtcttggac actcaaacat      4500
     aacacacaaa caccttctcg atccaaacac ctcccgcaac tgccctctct gccaatcaac      4560
     tccagttaac atggaacaca tcctagactc atgcccagca ataacccagg acaagcagct      4620
     actttttaaa gatctcaaag ccactgacta cctcaagcac ccatcagcag aaaatatagc      4680
     aactatcata aacttcctta aaaaaacaaa tttgtataat ctaatctaaa atcaaaatgt      4740
     aaaatatcac taaattaagt ccaataatac gtagtcgaag gccccgcagc tagaactaca      4800
     accccctatg ttagttttag ttttaaaaac tttactatca tctttaataa ataaataamt      4860
     aaataaa                                                                4867
//
ID   I-3_DBp     repbase;    DNA;    INV; 3021 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3021
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 703-703 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           690..2762
FT                 /product="I-3_DBp_2p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="PKDFGGLQLTTICLVIGFKKGKSTSDSLLYVDYLISK
FT                 SHQHSSLVTLDFSKAFDRVGVHSIIDQLQEWKTGPKIINYVRNFMLNRKII
FT                 IRVGQHRSNTLPLSNGIPQGSPISVILFLIAFNKLSDIISLHKEIKFNAYA
FT                 DDYFLIINFNKNKNISFNLGNLLNDIENWGSYSGASLSLSKCQHLHICKKH
FT                 NCTCVVTFNSMQIPTVSSLKILGINIDSKYKWNTHIDKLIPALHKKLNIIK
FT                 CLSSLKFNCSTYTLINVVKATIVAKIEYGLFLYGHAPKTTLNKLKPPLNSA
FT                 IRLALGAFRSTPTNNLLQEANIPPIELKRDLQTAKLSKNLIYSKDTPIHKF
FT                 VKQSKLKRKYPPIIDRIINLCEQFHLPFEPQTPSKLKPPWDLPNLIDTSIR
FT                 LHKKSNTPKETYQKIYEDTKSNLNSHNFIFTDGSKITDIITYAITTETNIL
FT                 KCGILPPYSSVLTAEIIAILEAIKIIKDKKGKYVICSDSLAAIDSIRNTNN
FT                 NNIYPNKIRSLITQLAPKIKLIWIPGHAGIAGNELADQAAKSTNKSPLIFT
FT                 SNINPTDIKRQLKSEFKARQNQNLIHCSQWYQSINSNSHHISDHFRTTHQN
FT                 CNRLDQTKITRLRLGHTNLTHQHYLNQIPTPPCPFCQGNLSLHHILNTCPP
FT                 LLQTKQTIFQNSNPLHLLNDLNPENIKKILHFLKTTQLYHKI"
XX
SQ   Sequence 3021 BP; 1210 A; 767 C; 337 G; 705 T; 2 other;
     ctacaaaaag aagammaaaa agcgtggaat acactcaacc gccacataac actagaaaac        60
     atcaaagact acagacgtaa aaatgcaaaa tttagataca ccttaaaaaa tagtaaaaat       120
     gaagcctcta gatccttcac ttcatcaatc catccgtcat ccccttcatc caaaatatgg       180
     gcgaatataa gacgtttttg cggacttaac ccagtcaagc aaatccacgc cataacaaac       240
     ccagacaaca acgaagtaac tacaactaat aacgaaattg ccaatatctt tgctaaacat       300
     ttttcaaatc tatcagacga catgaacttc ccagaacaat ttcgaaacaa caaatataga       360
     aacaacactg tagactacac accctcccca tcagctcaaa ccatagaaaa acagatttca       420
     aacctcgaac tagcgtcagc actacaaacc tcaaaggatc tgccccagga ctcaacagaa       480
     tctctaccaa atgatcaaaa atagctccaa tactacaaaa aacagaataa cagcctattt       540
     aacaaaattt cgacactcac ataccacaag ccttcaaaac cagccttata attcctatcc       600
     tgaagccaaa cagtgacaaa acccaaacca cctcctacag acccatctcc ctcaactgtt       660
     gcctacaaaa acactagata agatcatagc caaaagactt tggtggtttg caacttacaa       720
     caatctgctt agtaattggg tttaaaaagg gcaaatcgac ttcggacagt ctactttacg       780
     tagactatct catatcgaag tcacaccagc acagctcact cgtcactctt gatttttcaa       840
     aagcctttga ccgagtaggt gtgcattcta taatcgacca acttcaggaa tggaaaactg       900
     ggccaaaaat aataaactac gtccgaaatt ttatgcttaa cagaaaaata ataatccgtg       960
     tcggtcaaca cagatccaac acactaccct tatccaatgg aatccctcaa ggttccccaa      1020
     tctccgtcat actattcctt atagctttta acaaattgtc cgatataata tccttacaca      1080
     aggaaatcaa atttaatgca tacgccgatg actattttct aataattaac tttaataaaa      1140
     ataaaaatat tagctttaac ctaggtaacc ttttaaatga catagagaac tggggttcat      1200
     actccggggc atccctatcc ctatcaaaat gccaacacct ccacatttgc aaaaagcaca      1260
     actgcacctg tgtcgtaaca ttcaatagca tgcaaatccc cacagttagc tcgttaaaaa      1320
     tcttaggaat aaatatagac agcaaataca aatggaacac acacatagat aaacttatac      1380
     ctgcacttca caaaaaacta aatataatta aatgcctatc cagtctcaag tttaactgca      1440
     gtacatacac attaatcaac gtagtaaaag ctactattgt tgcaaaaata gaatacggcc      1500
     tattcctata cggacacgca cccaaaacaa cactaaacaa attaaaaccg cctctaaact      1560
     ctgccattcg cctagcgctc ggagcctttc gttccacccc aacaaataac ctcctacaag      1620
     aagccaatat ccctccaata gaattaaaac gagatctgca aacagccaaa ctaagtaaaa      1680
     accttattta ttccaaagac acaccaatac acaaattcgt aaaacaaagt aaacttaaaa      1740
     ggaaatatcc accaattata gaccgtataa taaacctctg tgaacaattt catctaccct      1800
     tcgaaccaca aacaccaagc aaactcaagc caccctggga cctacccaac cttatagaca      1860
     catccataag attacataaa aaaagtaaca cacccaaaga aacataccag aaaatatacg      1920
     aagacacaaa atcaaacctc aattcacaca actttatatt cactgacgga tcaaaaataa      1980
     ccgacattat aacatacgcc attacaacgg aaacaaacat cctaaaatgt ggaatcctgc      2040
     caccatattc ctctgttcta acagccgaaa tcatcgccat tcttgaagct atcaaaatta      2100
     taaaagacaa aaaaggcaaa tatgtaatct gttcagattc cctcgcagca atagactcta      2160
     ttagaaatac aaacaataat aatatttatc caaataaaat aagatcacta ataacccagc      2220
     tggccccaaa aatcaaatta atttggattc ctggccatgc aggcattgcc ggaaacgaac      2280
     tagcagatca agcagcaaag tcgactaaca aaagcccact aatctttaca tccaatataa      2340
     atcctacaga tataaaaaga caacttaaat ctgaattcaa ggcaagacaa aaccaaaacc      2400
     ttatacactg tagccaatgg taccaatcta tcaattccaa tagccaccac atcagcgacc      2460
     attttagaac aacccaccaa aactgtaata gactcgacca aactaaaatt acccgtctac      2520
     gtctaggaca caccaacctg acccaccaac actatctgaa ccaaattcca acaccacctt      2580
     gccctttctg tcaaggcaac ctctccttac accacatact aaacacatgt ccacctctct      2640
     tgcaaacaaa acaaactatc ttccagaact ccaacccgct acatcttctc aatgatctaa      2700
     acccagaaaa cattaaaaaa atactacatt tcctaaaaac aacacaatta taccacaaaa      2760
     tatgaatata aatatttaat aaggctagtt ccctaattta agaagaataa tgtacagaat      2820
     acatacataa ataacagtta aatactaagt taagacacaa catgtacata tccctcaaca      2880
     ttcaaccatc ccttaggctt aagcactatc aactcatata gccgaaggcc acagtagcca      2940
     gcgctatacc attaagttag tctagttttg taaacttttc tatcttttat aataataata      3000
     ataataataa tattaataat a                                                3021
//
ID   I-3_DEu     repbase;    DNA;    INV; 5380 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5380
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 945-945 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           150..1448
FT                 /product="I-3_DEu_1p"
FT                 /translation="MTDPPDIFKISSKSYHSQLGDPKFIIIKRKDNXSFEK
FT                 ISPFIIKKSVDFACGGEVDGCKKIRDGTLLIKTKNELQARKLLKLTKIAEM
FT                 EVTTSEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVSEVKKIMKRQNP
FT                 NTNSDSSNTTLVETGLIIITFETHKLPEILRIGYETVRVREYIPLPLRCRK
FT                 CLRFGHPAPICKSSETCTNCSETKHTNDNETCKNEKNDLNCKNNPELDHQH
FT                 SPTDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQSRNTYAKTLA
FT                 NATTQRTTNPQSSNANINTHTNTTQPQHKKSNTTPTSGTQTSPLNTTATGL
FT                 VTTTLPSGQTLQRHHHHDYDKLEDMDIDCITHTKKPTTPYSSQLTEDSLKI
FT                 KIFHKDKSKNLTTNLKASKTKTKALNKIQLTNNSDSESI"
FT   CDS           1517..5176
FT                 /product="I-3_DEu_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MALTIIQWNIHGYRNNYTELQMLIKSQNPHILALQET
FT                 HISNLSSLPSPINYTLHTSANNHNGFGGAALLIHNSISQNPMSLNSDFDAV
FT                 GVNIHSKYKFNIISAYISPSKSFNTNNLENTFASHNLHTLVLGDFNSWHPY
FT                 WGSPKHNARGKIIADYLDKSDFMLLNDKSPTHFSTHNTFTHIDLSFASSPL
FT                 APEIHWEVLDDLYGSDHFPILLSLFNNPSSPAFLSKPSFKLRSADWXLFKE
FT                 KSLLLNTSTHPSRNVNREAALIKKIIIQSAHFSIPQNTTFPLHRTVPWWNK
FT                 ELTLLKRDKSIKWRILKREVSXFNTIEYKKANAKLKRAVRIAKRASIRSFT
FT                 TDINQFSDPTKTWANIKRLCGMHPQKHIHCICNPMEITDQTEIANTFGXTW
FT                 SEQADDNNFSPQFRLNKQLLNTVPTYQPSNPALEIETNISYIEFSSALNSL
FT                 RGNTPGLDRISYSMIKNLPIPVKLRIVNHFNNILSSHIPQSLKLSLVLPIV
FT                 KPNKPKTELSSYRPISLNPCLSKVLDKIVAKRLWWFVLNNDLIHNSQFGFK
FT                 RGKSVLDSLLYVDHLASRSIALKKHLSILSLDFTKAFDRIGVHTILHQLHD
FT                 WHLGPKITNFVKNFMTNRKIIVKSGKCLSSIFPLDNGIPQGSPISVILFLI
FT                 AYNSLSNILSIPKQIKFCAYADDFHLLIQHNKRKNPTSNLSSLFNRIDEWC
FT                 LQSGSILSVEKCQLIHICRKHNCKAKIISGGTIIPSTNTLKILGLTINHRY
FT                 NWTSHINKLKSDLTKPLGIVKHLSSLKYNTNTATLVQIVKSLIVTKIDFCL
FT                 PIYGRAPKSQLNRLKSSLNSAIRSALGAFRSTPTNNLLAESGINTIEHKRD
FT                 FLTGKLSKTLSLSKDTPLKTFTKPQKRNYRYPSTIDLILKICNSHSIPTLP
FT                 IKKLPSKKFNMLNIIKATDTSLSKYNKNTTPPIVFQQLFHSLKSSYPNHNF
FT                 IYTDGSKANGITTYSITTERETIKTGLLPIFSSVLSSEIIAIQEAIVICAK
FT                 LPGKHAICTDSLSSVTAILNHDNHSHYPTLARNMITQHFPKIKLIWIPSHM
FT                 GIAGNEKADFAAKHAAKFPLTYTPNLSPSDASHFLKSLLHAKQTQLRTSVW
FT                 YQEILKLSTCTQPLKNSLLNRREQIIITRLRLGHSFLTNAHYLDRTRNNVC
FT                 PLCNISQIDIHHIICSCPSLSTQRSLFLNNPDPISTIANPTDTNSLNILKF
FT                 LNNSHITSQI"
XX
SQ   Sequence 5380 BP; 1909 A; 1603 C; 666 G; 1195 T; 7 other;
     acagtgttaa gcctagcttc gcgcaaacca aaaacgttat cagcaaaatc ttgcacaaac        60
     aaatatcaac cacaaagaga aaataaaaac ccaacaacac caaacacacg aaaacctmta       120
     atacgggctc aagcccttca kcagctatca tgacggaccc accagacatt ttcaaaatct       180
     catcaaaatc gtatcattcc caattaggcg acccgaaatt tataataatt aaaagaaagg       240
     acaacgastc gtttgaaaaa atatcaccat ttataattaa aaaatccgtg gactttgcct       300
     gtggaggaga agttgacgga tgcaaaaaaa taagagacgg aacattgtta ataaaaacta       360
     aaaatgaatt gcaagccaga aagctcctta aacttacaaa aatcgcagaa atggaagtga       420
     caacaagtga acataaaaca ttgaacttct ctaagggagt tatttattgt aacgacctta       480
     gatatattga cgaagacact atcttacaag aactaaaacc acaaaaagta agcgaagtta       540
     aaaaaataat gaaacgacaa aaccccaaca ctaactctga tagcagcaac accactctag       600
     ttgaaaccgg attaatcatt atcacatttg aaacacacaa actcccagaa atattgcgaa       660
     ttggatacga gacagtgcgt gtacgagagt atatcccact tccccttcga tgcagaaaat       720
     gcctccgctt tggtcaccca gcaccaatat gcaaaagctc cgaaacctgc actaattgct       780
     cagaaacaaa acacacaaac gacaatgaaa catgcaaaaa cgaaaaaaat gacctaaact       840
     gcaaaaacaa cccagaactt gaccatcagc acagcccaac cgaccgcaaa tgccccactt       900
     tcataaaaaa ccaagaacta acagctatta aaaccacaca aaaagttgat cacaaaactg       960
     cccaacgtat ttacttcgaa cgacacggat ttcaatcgag gaacacctac gccaaaacac      1020
     ttgcaaacgc cacaactcag aggacaacta accctcaatc atcgaatgct aatataaata      1080
     cacacacaaa cacaacacaa ccgcaacata aaaaatcgaa caccacaccc acatcaggaa      1140
     cccaaacttc tccattaaat acgacagcta ccggcttagt cacaacaact ctaccatcag      1200
     gccaaactct tcaacgacat caccaccacg attacgacaa actagaagac atggatattg      1260
     actgcatcac acacaccaaa aaaccaacca caccgtactc gtcacaactc acagaagact      1320
     cactaaaaat aaaaatcttc cataaagata agtctaaaaa cctaacaact aatcttaaag      1380
     catccaagac taagaccaaa gcgctaaata aaatccaact cactaacaac agcgacagcg      1440
     aatccatata gaaccttaaa ctcaaaccgt taacactacc aataaagtta agttacaaac      1500
     tttcatcttc actaaaatgg cattaacaat aattcaatgg aacatacacg gctatagaaa      1560
     caactacaca gaactccaaa tgttaattaa atcccagaat ccacacattt tagcccttca      1620
     agaaacccac atatcaaacc tatcctcact cccctcccca ataaattata cacttcacac      1680
     tagcgccaac aaccacaacg gctttggagg cgctgccctt ctcatccaca actccatctc      1740
     ccaaaacccc atgtctctga actccgactt cgatgccgtc ggagttaaca tccactctaa      1800
     atacaaattc aacataattt ctgcatacat ctcaccttca aaatcattta acaccaataa      1860
     cctcgaaaac acctttgctt cgcacaatct gcacacactt gtcctaggcg actttaacag      1920
     ctggcacccc tactggggtt cgcctaaaca taatgccaga gggaaaataa tagcggacta      1980
     cctagacaaa tcagacttca tgctccttaa cgacaaatcc cctacccact tctccaccca      2040
     caacaccttc actcacatcg acctatcctt cgcatcatca ccattagcac ccgaaatcca      2100
     ttgggaagtg ttggacgacc tatatggcag tgaccacttc cctattcttt tatccttgtt      2160
     taacaaccca tcctctcccg ccttcttatc caaaccttcc ttcaaactta ggtccgcaga      2220
     ctgggamctc tttaaggaaa aatccctcct cctcaacacg tcaacccatc ccagccgcaa      2280
     cgtcaaccgc gaagcagcgc ttataaaaaa gatcatcatt caaagcgccc acttctcaat      2340
     cccccaaaac acgactttcc ccctccatcg cacagttcct tggtggaaca aggaactgac      2400
     tcttcttaaa cgggataaat ccatcaaatg gagaatcctg aaaagagaag ttagtwcctt      2460
     caacaccatc gaatacaaaa aagcaaacgc aaaactcaaa agggccgtca ggatagccaa      2520
     aagagcttct atccgtagtt ttactacgga tatcaatcaa ttttctgacc ccacgaaaac      2580
     gtgggcaaac atcaaacgac tttgcggcat gcacccacaa aaacatattc actgcatttg      2640
     caaccccatg gaaattaccg accaaactga aatcgcaaac acattcggtm aaacctggtc      2700
     agagcaagca gacgacaaca acttttcacc ccaattccgc ctcaataaac aactcctgaa      2760
     tacagtcccc acataccaac cttcgaaccc agccctagaa atcgaaacga acatttccta      2820
     tatagaattc tcatccgcac tgaactccct aagaggcaac accccaggcc tcgaccgaat      2880
     ttcctactcc atgatcaaaa accttcctat ccctgtaaaa cttagaattg tcaaccactt      2940
     caacaacatc ctctcctcac acatccccca atcacttaaa cttagcctcg tccttcccat      3000
     agttaaacct aacaaaccca aaactgaact ctcctcgtat agacccattt ccctgaaccc      3060
     gtgcttatct aaagttcttg acaaaattgt ggccaagagg ttgtggtggt tcgttttaaa      3120
     taacgatctc atacacaaca gccaattcgg attcaaaaga ggcaaatctg tactagacag      3180
     tctactctac gtagaccacc tagcttccag atccattgct ctcaaaaagc atctgtcaat      3240
     tctatcgcta gactttacta aagccttcga tagaattggt gtacacacga tcttacacca      3300
     gctgcacgat tggcacttag gcccaaaaat caccaacttc gtcaagaact ttatgactaa      3360
     caggaaaatc atcgtcaagt ctgggaaatg cctatcaagc atattcccac ttgacaatgg      3420
     catcccacaa ggctcaccca tctccgtaat cctattccta attgcctaca attccctctc      3480
     caacatccta tctatcccta aacaaattaa gttctgcgca tacgctgacg acttccacct      3540
     ccttattcaa cacaacaagc gtaaaaatcc tacatccaac ctctcatccc tttttaatcg      3600
     cattgacgaa tggtgcctcc aatcgggctc cattctctct gtagaaaaat gtcaactcat      3660
     ccacatctgc cgcaaacata actgcaaggc caagataatc tcaggcggca ccattattcc      3720
     gagcaccaat accctcaaaa tattaggcct tactattaac cacagataca actggacctc      3780
     tcacatcaac aaactgaaat ctgacctcac aaaaccactt ggcattgtca agcacctctc      3840
     ctccctcaag tacaacacta atacagcaac tcttgtccaa atagtcaaat cccttatagt      3900
     gaccaaaatt gacttctgcc tccccattta tggtcgcgca cccaaatccc agcttaaccg      3960
     cctaaaatcc tcccttaact ccgcaatwag atcagcactg ggtgcattcc gctctacgcc      4020
     aaccaacaac ttactggctg agtcgggcat caataccatc gaacacaaaa gagacttcct      4080
     taccggcaag ctctccaaaa ccctctccct gtctaaggac acccccctaa aaactttcac      4140
     aaaaccccaa aaacgaaact atagatatcc cagtaccata gacctaatcc taaaaatctg      4200
     taactcccat tctatcccaa ccctcccaat aaaaaagtta ccctccaaaa aattcaacat      4260
     gctcaacatc atcaaagcca cagacacctc cctctccaaa tataataaaa acactactcc      4320
     cccaatcgtt ttccaacaac tcttccactc cctcaaatca tcctatccta atcacaactt      4380
     catctacaca gatggctcca aagccaatgg tataaccacc tacagcatta caaccgagcg      4440
     cgaaaccata aaaacaggcc tcctacctat cttctcctcg gtactatcga gcgagattat      4500
     agccatccag gaagccatag tcatctgcgc caagctgcca ggcaagcatg ccatctgtac      4560
     agactccctt tcctcagtta ccgcgatcct taaccacgat aaccattctc actatccaac      4620
     cctagctcgc aatatgatca cccaacactt cccaaaaatc aaacttatct ggatccccag      4680
     tcacatgggc attgcaggta acgaaaaagc tgactttgca gcaaaacatg ctgccaaatt      4740
     ccccttaacc tacaccccta acctaagccc cagtgacgca tcccatttct taaaatctct      4800
     cctacatgca aaacaaacac aactgcgtac ctccgtttgg tatcaagaaa tactcaagtt      4860
     atcaacgtgt acccagcccc tcaaaaactc cctcctaaac agaagagaac aaatcatcat      4920
     cacccgcctc agactaggac actcattctt aacaaacgcc cactacctcg acagaactag      4980
     gaacaacgtg tgcccattat gcaacatctc ccagattgac atccaccaca ttatttgctc      5040
     ctgcccctcc ctctccacgc aaagatcctt attcctcaat aatccagatc caatcagcac      5100
     catagctaac cccacagata caaactcttt aaacatcctc aaattcctaa acaactccca      5160
     tatcacctcc caaatctaac taaatcaaag tttttgtaaa taaaatgtaa atagtaatcc      5220
     atagcaatat cttgtatata ctcataagcc aaacattcac aagccatatt ctaacttaag      5280
     ccgagctgaa ggccctagct gctattgctc ctagccattt gttagctctt agttttaact      5340
     aattgttagc cttagataaa taaataaata aataaataaa                            5380
//
ID   I-3_DF      repbase;    DNA;    INV; 5328 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5328
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 965-965 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1446
FT                 /product="I-3_DF_1p"
FT                 /translation="MNRPPDLDYPALGNKTTTLDPKFLIISRTDNETFEKV
FT                 SIFIIKRVIEFTCGGEIETCTKTRNGTLLVKTKSSAQAVKLLKLSNFHNFT
FT                 VKVTIHEILNSSKGVIYSNELRHVDEADILNELKLQRVNNVEKIFIKKNNI
FT                 LQESGLVIVTFSSTFLPDTIMIGWERIRVRPHIPRPLKCRNCLRFGHPTKA
FT                 CRTPTKACSNCSGEVHTPDDTECDKPKFCINCKNDINNEYNHSPLDKTCPA
FT                 FIKQKEIITIKTLQKVDYKTATKIYHTRHTHQSTPYSKIASSEKPTITENQ
FT                 APKTASTEGTNTNTNREIRNYNDIINPLPSTSSKLIKQTTNPGIEHMDTET
FT                 SAEVTATRSKNTTLESDRKLRSQTKDKSNVISKPSLKAKDKSDKSKPINTS
FT                 KLANELSKLANRNSSEEEL"
FT   CDS           join(1542..2423,2309..5197)
FT                 /product="I-3_DF_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKIIQWNIHGYRNNYIELQSLIKTFNPLILALQETH
FT                 ITNFNSLPIPINYTLYQQCCTNSYGGAALLIHNSISQRQISITQDFEATGV
FT                 SIDTKLKLNIISAYISPTKPFNRNNLENVLCFDNTPTLVLGDFNSWHPYWG
FT                 SPSPNARGNIIAKFLDRSDYILLNDKSPTHFSTHNSFTHIDLSFSSSNIAP
FT                 EFLWETIDDLYGSDHLPILISMNLNTSPSSYTSKPSFNLKKANWEAYKKSF
FT                 RYNSTDKPPSENVNKEAAMLRKLLSKARTNLSPRTLLFNFLEQSLGGIKTY
FT                 QFRSSYVKKIIIQSAHQSIPQNTTFQFPRTVPWWNQNLSILKKAKASKWSI
FT                 LKRNITTYNTIEYKKANAKLKKAVREAKRISTFNFTSDISPFSSPARTWSN
FT                 IRRLCGFYPSKHIHCINDPSFPTPRTSQSEIANSFGLAWSKEGDDSNFSPT
FT                 FRTNKSLLNPTIDYQPSNSALEIEKDISFIEFSSALNSLKGKTPGLDRISY
FT                 IMINNSPISFKHRVLNHFNSILDSSIPQAYKHSLVLPILKPQKLKTDLKSY
FT                 RPISLNSCLAKTLDKIIAKRLWWFVLNNNLINSHQIGFRRGRSVIDSLLLV
FT                 DHIATRSLSLKKHITLISLDFNKAFDKIGIHSVINQLKEWKIGKRILNYVL
FT                 NFMTNRKIIIKSGNNLSNIFPLNNGIPQGSPISVILFLIAYNALSNIISVH
FT                 KEIKLTAYADDFHLIIEHNKQKNPTSNLQTLFSQIDDWCTYSGSILSKEKC
FT                 QVLHICRKHNCSANILTGDTKFPNTNSLRILGLTINNKYTWSNHISKLKTE
FT                 LLKPLNIIKHLSSLKYNCNTSTLINTIKSILISKIDFCLPIYGYSPKSKLN
FT                 CLKTIINAALRSAMGAYRTTPVNNLLLESKTNTIEQKRNFLTAKLSKNILF
FT                 AHDTHITKLIKPHKRIYKYPSTIDRIIKTCNHLSLPVSPIRTSKCNKFNMP
FT                 TIHKAIDTILSSHNKQNTPATTYQQLFRSLQSSYPQHNFVYTDGSKADGIS
FT                 GFSITDENNLLKSGLLPMYSSSYTSEIIAILEATKLCQRKSGKHAICTDSL
FT                 SSLNSIKNHNKHSYYITSIRNILTKNFPKISLIWIPSHIGIKGNETADSFA
FT                 KLTLQSPLIYTPNYNFTDIARLLKQCSDNELIDTLETASPWYKLIKPPTFP
FT                 HKYEMNRRHQIIINRIRLGHTKLTNAHYIDINLSSICPMCNNNPITLTHIF
FT                 TSCPALTLQRTALFNSQDPLHSISNPNLINTQKIILFLNNCNILYKI"
XX
SQ   Sequence 5328 BP; 1963 A; 1428 C; 634 G; 1303 T; 0 other;
     cagtaccagt ccaaacctca ttgagtaaag acgtgctatc ggcagaactt cgcgagtacc        60
     atcagttaca aaaacaaagt tctaccaatt ttggcaaaaa caaacaagtg cgtaaagaag       120
     atttcaaaaa aacccaagaa caactatcac agcaaaaccg ctacaaaagt gctctgtgca       180
     acgggcgaca gcccaagcac aataacaatg aatcgaccac ctgatctaga ttaccctgca       240
     ctgggtaata aaacaacaac tcttgacccg aagttcctca taatctccag aacagataac       300
     gagacttttg aaaaagtttc gatattcata ataaaaagag ttattgaatt cacctgcggc       360
     ggagaaattg aaacatgcac taaaaccaga aacggaaccc tattagttaa aaccaaaagt       420
     tcagcacagg cagtaaaact gctaaaactc tccaatttcc acaacttcac tgtaaaagtc       480
     actatacatg aaattttaaa ctcctcgaaa ggagtaatat actcaaatga actacggcat       540
     gtagacgaag ctgatatatt aaacgagctt aagcttcaaa gggtcaacaa tgttgaaaaa       600
     atcttcatca aaaagaacaa cattctccaa gagtctggac tcgtaattgt caccttctct       660
     tcaacgtttc tcccggatac cataatgata ggatgggaaa gaataagagt tcgtccacat       720
     attccacgcc cattaaaatg ccgcaactgc ctcaggtttg gacaccccac gaaagcctgc       780
     aggaccccca ccaaagcctg cagcaactgc tcaggagaag tacacacgcc agacgacact       840
     gaatgcgaca aacccaagtt ttgcataaac tgcaaaaacg acattaacaa cgaatacaac       900
     cacagtcccc tagataaaac atgcccagcc ttcattaaac aaaaagaaat aataacaatt       960
     aaaacactac aaaaagtcga ctacaaaacc gccacaaaaa tctatcacac gcgccacacc      1020
     caccaatcta ccccgtactc caagatagca tcctccgaaa aacctacaat cacagaaaac      1080
     caagctccaa agactgccag caccgaaggc accaacacta acaccaaccg tgaaataagg      1140
     aactacaacg acattatcaa tccactaccc agcacttcgt ccaaactcat caagcaaaca      1200
     acaaaccccg gcatcgaaca tatggatact gaaacctccg cagaagtcac cgctacccgc      1260
     tctaaaaata caacccttga atccgatcgt aagcttagaa gccaaactaa agataaatca      1320
     aatgtaattt ccaaaccctc cctcaaggct aaagacaaat ctgacaaatc taagcccata      1380
     aacacatcaa aattagcaaa cgaattaagc aaattagcca atcgcaatag ctctgaagaa      1440
     gagctttaaa tagttttctt tttagtttat tattgttatt gaactttaaa aactaatcgc      1500
     tcaaactagt actaagtaat actccttccc cttacattat aatgcttaaa attattcaat      1560
     ggaacatcca tggatataga aataactaca tcgaactcca atccctgatc aagaccttta      1620
     accccctaat ccttgcccta caagaaacac acataaccaa ctttaactct ctacccattc      1680
     ccattaacta cacactctac caacaatgct gcaccaactc ttacgggggc gcagcactcc      1740
     tgatacataa ctcaatatct caaagacaaa tctcaatcac ccaagacttc gaagcaactg      1800
     gagtctcaat agacactaaa cttaaactaa acataatatc agcctacatt tcaccaacca      1860
     agccctttaa cagaaataac ttagaaaacg tcctctgttt cgacaacact cccacgttag      1920
     tcctcggaga ctttaacagc tggcacccct actggggctc acctagccct aatgccagag      1980
     gcaatattat tgccaaattc ctagaccgtt cagattacat cttattaaac gacaaaagtc      2040
     ccacccactt ctccacacac aactctttca cacatataga cttatccttt tcttcatcca      2100
     atatagcccc agaatttctc tgggaaacaa tagacgacct ctacggtagt gatcacctcc      2160
     ctattttaat ctcaatgaac cttaatacct ccccctcatc ctacacctcc aaaccctcct      2220
     ttaacctaaa aaaagcaaac tgggaagcat acaaaaaatc ttttcgatac aattctactg      2280
     acaagcctcc aagcgaaaat gtcaataaag aagcagctat gttaagaaaa ttattatcca      2340
     aagcgcgcac caatctatcc cccagaacac tacttttcaa tttcctagaa cagtcccttg      2400
     gtggaatcaa aacttatcaa ttttgaagaa agccaaagcg tctaagtggt ctatattaaa      2460
     gcgcaacatt actacttata atacaattga atacaaaaaa gccaacgcga aactaaaaaa      2520
     agcagttaga gaagccaaac gcatctctac tttcaatttc acttctgata ttagcccctt      2580
     ctcatctcca gctagaacat ggtccaacat caggcggctt tgcggttttt acccctcaaa      2640
     gcatatacat tgcattaacg acccttcctt ccccaccccc agaacatccc aaagcgaaat      2700
     tgctaactcc tttggacttg cctggtccaa agaaggcgac gacagtaact tttctccaac      2760
     ttttcgcact aacaaatctc tcttaaaccc caccatagac taccaaccct ccaattctgc      2820
     actcgaaata gaaaaggaca tttcattcat tgaattcagc agcgcactca actccctgaa      2880
     aggcaaaact ccaggcttag atcgcatctc ttacattatg atcaacaact cccctatatc      2940
     attcaaacat agagtcctta accactttaa ctcaatccta gattcctcaa tcccccaagc      3000
     ctacaaacat agcctagtac ttcctattct aaaaccccaa aaacttaaaa cagacctaaa      3060
     atcgtaccgt cctatatccc taaactcatg cctcgccaaa acacttgata aaattatcgc      3120
     caagagactg tggtggtttg ttttaaataa caatctaatc aacagccatc agattggatt      3180
     tagaagggga agatctgtca tagacagtct acttttagta gaccacatag caactagatc      3240
     cctctccctc aagaaacaca tcacattgat ctctcttgat ttcaacaagg catttgataa      3300
     aattggcata cactccgtaa ttaaccagct gaaggaatgg aaaattggca aacgcatatt      3360
     aaattacgtc cttaacttta tgacaaacag aaagataatt attaaatccg gcaacaacct      3420
     ttcaaacatt ttcccactca ataatggcat cccccagggg tctccaatct cagtaattct      3480
     ctttcttata gcttacaacg cactctccaa tattatctcc gtacacaaag aaataaaact      3540
     aacagcttac gccgatgact tccatcttat aatcgaacac aataaacaaa aaaaccccac      3600
     ttccaacctt caaaccctgt tttctcaaat agacgactgg tgtacttact caggatcaat      3660
     cctatcgaaa gaaaaatgcc aagttcttca tatatgcaga aaacataact gttctgccaa      3720
     tatccttaca ggcgacacaa aatttcccaa taccaactcc ctcagaatac taggtcttac      3780
     tattaacaac aaatacacct ggtccaacca tatttcaaaa ttaaaaacag aactattaaa      3840
     acctttaaat atcatcaaac atctctcttc ccttaaatat aactgtaaca catccactct      3900
     tatcaatact attaaatcta tccttatttc aaaaatcgat ttttgcctgc ctatttacgg      3960
     gtattctccc aaatctaaat taaactgctt aaaaacaata ataaatgcag ctctaagatc      4020
     agccatggga gcctatcgaa ccactccagt aaacaactta ctactagaat ctaaaacaaa      4080
     cacaatagaa caaaaacgaa acttccttac agccaaatta agtaaaaata tccttttcgc      4140
     ccacgacacc catataacta aactaataaa gccacacaaa agaatataca aataccctag      4200
     taccatagac agaataatca aaacatgcaa ccatctatct cttcccgttt ctcctatccg      4260
     aaccagtaaa tgtaataaat ttaatatgcc aaccatacat aaagctatag atactattct      4320
     gtcatctcat aataaacaaa atacccctgc aacaacctac caacaacttt tcaggtcctt      4380
     acaatcctca tacccacaac acaattttgt atatactgac ggttctaagg ctgatggtat      4440
     atctggattc agtattaccg atgaaaataa ccttttaaaa tccggtctac ttccaatgta      4500
     ctcttcctcc tacacgagcg agatcattgc catcctagaa gccacaaaac tttgtcaaag      4560
     aaagtctgga aaacacgcaa tctgcactga ctccctctcc tcccttaact cgattaaaaa      4620
     ccacaataaa cactcctact atataacatc aataagaaac atcctaacca aaaacttccc      4680
     aaaaataagc cttatttgga ttcctagcca cataggaata aaaggtaacg aaactgctga      4740
     ctcatttgcc aaacttaccc ttcaatcccc ccttatatac acccctaact acaactttac      4800
     tgacattgct cgcctcctta aacaatgctc agacaatgaa ctgatagaca ccttggaaac      4860
     agcctctcct tggtacaaac ttataaaacc cccaacattc ccacacaaat acgaaatgaa      4920
     tagaagacac caaattatca tcaacagaat acgacttgga cacaccaagc tcaccaacgc      4980
     gcattacatt gatataaacc tttcctctat ctgccccatg tgcaacaaca acccaattac      5040
     cctaacccat atttttacct cttgtcccgc ccttactctc caacgaactg cattgttcaa      5100
     ctcccaagac cctctccaca gtatctcaaa tcctaattta atcaacaccc agaaaattat      5160
     acttttcctt aataattgca acatactata taagatataa aaaatctgta aaatacaata      5220
     aaaataataa tcacaactgc taaactacaa aaagcgagct taaggcctgt tgctgctata      5280
     gctctaaaaa tgaaaccatt gttaggttat agtttttaac tataagtt                   5328
//
ID   I-3_DK      repbase;    DNA;    INV; 2675 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2675
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1335-1335 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2539
FT                 /product="I-3_DK_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="TIDPAEIANTLGDLWSKQAKDSNFSPEFRTNKMLITP
FT                 HNTYAPTPTAIEIEKNINLIELNSAINSLKGHTPGLDRISYSMIKNTPISF
FT                 KFRILQHFNDILDSHIPQSYKLSLVLPILKPNKPKTNPNSYRPISLNPCLA
FT                 KVLDKVVANRLWWFVLSNKLIHNNQFGFKRGRSVLDSLLYVDHLATRSLSL
FT                 KKHISIISLDFAKAFDKIGIHSLIHQLEKWKLGPRIIKYVWNFMTNRKIIV
FT                 KNGTSLSISFPLDNGIPQGSPISVILFLIAYNSLTNIISIPNXLXFTAYAD
FT                 DFHLILQHNRNNNPQVNLSTLFHQIGEWCSYSGSSLSIDKCQLLHICRKRS
FT                 CRANIITGSINIPTTDHTKILGLTINKRYSWNHHITNLKTSLSRPLNIIKH
FT                 LSSRKYNCNTTSLIQIVNSILISKIDYCLPIYGKAPTSILNCLKSTQNSAI
FT                 RAALGAFRTTPINNLLIEAKINTLENRCKLLTSKLGTKLILSHNSPIGKLS
FT                 KSIAKTKRNYRYPSTLDRIIDSCKSFSLPFSPAKFYTSKKYNPGIILKATN
FT                 TSLSLYNKNTTSPITYHQLFHSIKNSLHDHKFIYTDGSKTNDTVGYSVTNN
FT                 TDIIKSGLLPQYSSVISSELIAIHEAIKICSGSPGKYAICSDSLSSIKSIS
FT                 NVNNYSYYPNTIRSLITKLFPKIRLIWIPSHIGIQGNERADTAAKETHKYP
FT                 LIFTDNFNTKDITQLLKKHYTDKLNSLQAQTTQWYKQILLNTPANFSFKTT
FT                 NLNRQQQIIINRLRLGHTQLTNAHYMNRSLTSICPFCNTSAIDIQHILIDC
FT                 TALSHVRTICFSNDNPIHLLANPTAANSNKIIYFLHKMNLIHKI"
XX
SQ   Sequence 2675 BP; 972 A; 734 C; 286 G; 680 T; 3 other;
     aacaatagac ccagctgaga tagctaacac actcggagac ctatggtcaa aacaggcaaa        60
     agactccaac ttctccccag aattccgcac taacaaaatg cttattactc cccacaatac       120
     atatgcccca accccaacag ccatagaaat agaaaaaaac ataaatctaa tagaactaaa       180
     ctctgccatt aactcactta agggacacac accaggacta gaccgtattt cttactccat       240
     gattaaaaac actcccatct catttaaatt tagaatttta caacacttca acgacattct       300
     tgattcccac atcccccaat cctataaact cagccttgtg ttaccaatcc ttaaacccaa       360
     taaacccaaa accaacccca actcctaccg tcccatttcc cttaacccat gcttagccaa       420
     agtcctagac aaagtcgtag caaataggtt gtggtggttt gtcctttcaa ataaactaat       480
     tcataataat caatttggtt ttaagcgtgg cagatcagtt ctagacagtc tactttatgt       540
     ggaccacctt gcaacaagat cattgtctct aaaaaaacac atctctatta tctctctcga       600
     ctttgcaaaa gcttttgaca aaataggcat tcattctctc attcaccaac tagaaaaatg       660
     gaaacttggt ccccgaatta taaaatacgt atggaatttc atgacgaaca ggaaaatwat       720
     agttaaaaac ggcacatctc tctctataag cttcccactc gataacggta tccctcaagg       780
     atcccctata tccgttatcc tcttccttat cgcctacaac tccctaacta acattatctc       840
     catcccaaat aawcttamtt ttacagccta tgctgacgac ttccatctaa tattgcaaca       900
     taaccgtaac aacaatcccc aagtcaacct ttcaactctt ttccatcaaa tcggagaatg       960
     gtgttcttac tcaggttctt cactttcaat tgataaatgt caactactcc acatatgccg      1020
     gaaaagaagt tgcagggcaa acatcatcac tggttccatc aacatcccaa ccactgatca      1080
     tacaaaaatc ctaggactca cgataaacaa acgatacagc tggaatcatc acattaccaa      1140
     cctgaaaaca tccctctccc gtcccctaaa tatcataaaa cacctctcct caagaaaata      1200
     caactgcaac acaacctccc tcatacaaat tgtaaactct atcctcatct caaaaattga      1260
     ttactgccta cctatatacg ggaaagctcc cacctccatc ttaaactgcc ttaaatcgac      1320
     ccaaaactct gctataagag cagccctcgg ggcctttaga acaactccta taaataacct      1380
     gctaattgaa gctaaaatta atacactaga aaacagatgt aaacttttaa caagcaagct      1440
     cggaacaaaa cttattctct ctcataactc cccaataggc aaactatcca aatccatagc      1500
     caaaacaaaa agaaactaca gataccccag cacattagac agaatcatcg actcctgcaa      1560
     atcattttcc cttccattct ctcccgccaa attctacacg tcaaaaaaat acaatccggg      1620
     aataattctt aaagccacaa acacctccct ttccctatac aacaaaaaca caacttcgcc      1680
     tataacatac caccagctgt tccactctat taaaaactcc ctacacgatc acaaattcat      1740
     ttacacagac ggctcaaaaa caaatgacac tgtgggctac agtgtaacca acaatactga      1800
     cataatcaaa tctggactcc ttccccagta ctcctccgta atctctagtg agttaattgc      1860
     aatccatgaa gctataaaaa tttgctctgg atcacctggc aaatatgcta tatgctcgga      1920
     ctccctttcc tcaatcaaat ccatttcaaa cgtaaacaat tactcttact accccaatac      1980
     aataagatca cttattacca aactctttcc caaaatcaga ctaatttgga tccctagcca      2040
     cataggtata caaggcaatg agagagcaga cacagcagct aaagaaacac acaaataccc      2100
     tctaatattt acagacaact tcaacaccaa agacatcaca caactcctta aaaaacacta      2160
     taccgacaaa ctgaacagtc ttcaagcaca aactacccaa tggtacaaac agatcttact      2220
     aaacacccca gcaaacttct ctttcaaaac cacaaacctc aaccgacaac aacaaattat      2280
     aataaataga ctacgactag gacacacaca actcacaaac gcccattata tgaatagatc      2340
     cctaacaagt atctgtccct tttgcaacac ctcagcgata gacatccaac acattttaat      2400
     agactgcact gcactttcac atgttagaac aatttgcttt tccaatgata acccaatcca      2460
     tctccttgcg aatccaacag cagcaaactc aaataaaatt atatactttc tacacaaaat      2520
     gaatctcata cataaaattt aattataaca tattccacac acatatcttt gttaatacac      2580
     tgtagagcgg aaggcctcgg tagccattgc tcattatcct ttgttaactt ttagtttata      2640
     actattagtt agcattaaat aaataaataa ataaa                                 2675
//
ID   I-3_DSuz    repbase;    DNA;    INV; 5341 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5341
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 611-611 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..1457
FT                 /product="I-3_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MGPEPPNLQGNRFAVLGESPKSKKKRPYQKLTEEFPE
FT                 LPTPVQKNPKFIIVKTKDSQKPISHYSCFAVHKALQTISKEIISISTLRDG
FT                 NLLMLVTTKPVADKFLRTTHLPGLCDVEFNYHESLNFVKGTIYAPCLNNIP
FT                 EEEIVKELRAQNVHSVFKFTKTIDNATKPSGVILVTFDLYNLPSKLDISWY
FT                 SVKVREYIPNPMRCKNCQRIGHTARHCGDPTMCSTCNLAPHPPAPCSRTEC
FT                 ANCSGQHPASSPACPAYQQQRDLLKIKTTKKCSMREARIIQKQQLQQSSST
FT                 INHSASFAKVASSQPTSVTASKPKQDSLQAEDNNKPSTSKQSTTNVTQKAN
FT                 VTPSPTSPPTPLPGSPHFPLSPHYPKSPPSPRTQDKNPMIKDRLKKSRAII
FT                 NEAQRFLKTLDSDHSNSTNENMSTDSEFSQAKNLSDSESQMEQDL"
FT   CDS           1504..5184
FT                 /product="I-3_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MPLKITQWNINGFINNYNQLSLLINDNSPDIICLQET
FT                 HLPNDSKSFVCPKAYLAYFCNLPHNTSAKQGIGVLIKRHIPHTHKQITSNI
FT                 LCSALQLDLDRPITIINMYIPPCQSFRSTDIVDCLNHISGPFIVLGDFNSW
FT                 SPLWGSPKSNSRGKALERTIADLNLITLNDGSATHLSTHNTLTHVDISLIS
FT                 PQLAHICDWSIASNLYGSDHFPITTFVSIRFSADKSPPLPKYKTDLANWES
FT                 FKTKCTSISLTWKTGSLNSQIAQITKCIRAAANCSIPQTKSIPHKAKVPWW
FT                 NHSLQELRDEKQDLFHKYKSDLTIPNLLLYKRANACFRKAVLAAKRTCFQN
FT                 FTSRISPFTTPKKIWSDVKRLAGVPPTPIKYLKTETGLLTCPKKIAEQFGY
FT                 CWSEYSADHNFSQQYCQSKQTYLNHTYQPISTSLSARQLDLNFTKLELEIA
FT                 IQTAKGKSPGFDRISYPMLKNLPPAVKDKLLEVFNAMLQTGSYPHTWKSAT
FT                 IIPIPKPNKTNPEINSFRPISLLSCLGKTVEKMIARRLMWFTTQKSRISHY
FT                 QVAFKKSHSTMDALLRFQHFASKALSTKNHVSILATDFEKAFDRVGLHSVL
FT                 YQLVLWGVGPRLYNLIKAFMTNRTFRVRVNNSTSNLHKLHNGIPQGSPLSV
FT                 VLFMIAFEQISSIFNRHKDISISLYADDAFIYTNKKDLNSVKDTFSNVLDE
FT                 LEQWGASSGASLSIGKCQVLHICRKQNCNFPEIVFKNKVIQQTNHLKILGI
FT                 TFDSRLTFKEHCLRLRKQLESRLNIIKFLSSKYSHVHINTLINITRALILS
FT                 KIDYGLPIFGWIAASNIKSIQPPYHAAVRRSIYAFPTSPTKCTLAESGLPS
FT                 ITNRIKETTTRLIPKLYTTPNRLLADDFKNIFKERRRYKYPSTLRICANFS
FT                 KKLDLPPPNRFRSSGPSPPWSRNQPNINTKLRISTKSDTPSSVHRTRFQNE
FT                 KELLGEKHWLFTDGSKTLESTTFAVIDANNTIIAGGALPLYNSIFVAEATA
FT                 ILLACRFATSKNGEFVVCTDSLSSLLAINNPEYRDPTIREIQRLTKEHPKK
FT                 ITLFWVPSHQGIKGNEDADQAAHNIGLSPTFIFTPINSKDIHKLIDRNLEN
FT                 QKMEEWSTFTHRYCKFNPTCTKIPLPAAIGRRQCSTFIRLRIGHTKHTHEH
FT                 LLKGINNPICSLCGGIPNTDHLLDNCPGLANIRAHLFGTQPPSQILDCPSV
FT                 ENIKKIYEFISKSKLAI"
XX
SQ   Sequence 5341 BP; 1746 A; 1474 C; 858 G; 1263 T; 0 other;
     cagtcaccga ctaccagtca tcgagtgcgg acgtctttat tctttctcat cgttgatctt        60
     cggaacctgt gctcagtata cctccccccc cctccgagtg cacctacgtc tgccaaaaca       120
     gacgaaaaac actcgcgatc atgggccccg agccccccaa tctgcagggt aatcgctttg       180
     ctgtgctagg cgagagcccc aaatcaaaaa agaaaagacc ttaccaaaaa cttacggaag       240
     agttccctga acttccaact ccagttcaaa aaaatccaaa gtttataata gtaaaaacaa       300
     aagactccca aaaaccaatc tcacactact cttgcttcgc tgtacacaag gcactacaaa       360
     ccatcagcaa ggaaataatt tccatttcta cgctaagaga tggaaatcta ttgatgctag       420
     ttaccaccaa accagtggcc gacaaattcc tccgtaccac ccacttacct ggcttatgcg       480
     acgtcgaatt caattaccac gaatctctta actttgtgaa gggaacaata tacgcaccat       540
     gcctaaacaa catcccagaa gaagaaattg tgaaagagct acgagcccaa aacgtgcatt       600
     cggtattcaa gtttaccaaa accatcgaca acgccaccaa accctcggga gtgattctgg       660
     tcactttcga tctctacaat cttcccagta agctggacat ctcttggtac agtgtcaaag       720
     taagggaata cataccaaac ccaatgcggt gcaaaaactg ccagaggatc ggacatacag       780
     ctagacactg tggtgatcca accatgtgct ccacctgcaa tcttgcccct cacccacccg       840
     cgccctgctc acgcaccgag tgcgcgaact gctcaggcca acaccccgcc tcctcacctg       900
     cttgcccagc gtatcaacag caaagagacc tactaaaaat taaaacaaca aaaaaatgca       960
     gcatgcgtga agctagaatt attcaaaaac aacaactaca acaatcatca tcgacaatca      1020
     atcactcggc ttccttcgcg aaggttgctt cctctcaacc gacttcggta acggcttcga      1080
     aaccgaagca agactctctg caagcagaag acaacaacaa accatcaacc agcaagcaaa      1140
     gcacaaccaa tgtaacacaa aaagcaaatg taaccccctc ccccacctct cctccaacgc      1200
     ccttgccggg ctccccccat ttcccccttt ccccccacta ccccaaatca ccaccgtcac      1260
     cacgaacgca agataaaaac cccatgatca aagaccgact aaaaaaatct cgcgctatca      1320
     ttaacgaagc gcaacggttt ctaaaaactt tagattcgga ccacagtaat tctacaaatg      1380
     aaaatatgtc cacagactcc gagtttagcc aagcaaaaaa cctttctgac tctgaatctc      1440
     aaatggaaca agatctctaa aagcgccccc agtaccctcc tttttttttt cttatttaaa      1500
     taaatgcctt taaaaatcac ccaatggaat ataaatggat ttataaacaa ttacaaccaa      1560
     ctgtctctac tcattaatga caattcgccc gacattatat gcctacagga aacccatctg      1620
     cctaacgatt caaaaagctt tgtttgccct aaggcctatt tagcttattt ctgcaacctt      1680
     ccccataaca cgtcagccaa acaaggtatt ggagtgctca ttaaaagaca catcccccat      1740
     acccacaaac agattacatc aaacatatta tgctcagcac tccagcttga tctggaccgg      1800
     cccattacca taataaatat gtacatccca ccttgccaga gtttcaggag taccgacatt      1860
     gttgactgtt taaaccatat atccggaccc ttcatagtgt tgggcgactt caactcttgg      1920
     agcccgctat ggggatcgcc aaaatccaac tcccggggga aagccctgga gcgtacaatt      1980
     gctgacctaa atttaatcac acttaatgac ggctccgcca ctcacctctc gacccacaat      2040
     actcttactc acgtagatat ctccctgata tccccacaac ttgcgcacat atgcgactgg      2100
     tctatcgctt ctaatttgta tggcagcgat cacttcccaa tcactacgtt cgtatcaatc      2160
     cgtttcagtg ctgataaatc cccaccgtta ccaaagtaca aaaccgactt ggccaattgg      2220
     gagagtttta aaacaaaatg cacgagtatc tcattgacat ggaaaactgg tagccttaac      2280
     agccaaattg cccaaattac taaatgtata agggcggcgg caaactgcag catcccacaa      2340
     actaaaagca ttccacacaa ggccaaagtc ccctggtgga accactctct ccaggagctt      2400
     agggacgaaa aacaagatct ttttcacaag tacaaatcgg accttacaat tccgaatctt      2460
     ttactctaca aaagagccaa cgcttgcttt agaaaagctg tactagctgc caaacgcacc      2520
     tgctttcaaa acttcacttc ccgaatctca cctttcacta cccccaaaaa gatatggtcc      2580
     gatgtcaagc gcctagctgg ggtacccccc acccccataa aatatttaaa aacggaaact      2640
     ggtcttctta cctgtccgaa gaaaattgca gagcaatttg gatattgttg gtcagagtac      2700
     tcggccgacc acaacttctc tcagcagtac tgtcaatcta agcaaaccta tttaaaccac      2760
     acctaccaac ccatttctac atctctttcc gcgaggcaac ttgacttaaa ttttacaaaa      2820
     ctggaattag aaatcgcaat tcaaacggca aagggaaaaa gtcccggctt tgacagaatt      2880
     tcgtatccca tgcttaaaaa cctaccacca gctgttaaag ataaactttt agaggtcttt      2940
     aacgcaatgc tccaaacagg atcctatcca catacctgga agtcagccac gataatccct      3000
     atacccaaac caaacaaaac taacccagaa atcaatagct tccgtcccat ttcacttcta      3060
     tcttgcctag gaaaaacagt cgagaaaatg attgcacgca ggctcatgtg gtttaccacc      3120
     caaaaaagcc gtatctctca ctaccaggtt gcattcaaaa agagtcacag tactatggat      3180
     gctctcttga gattccaaca cttcgcgtcg aaggcccttt ctacaaaaaa tcacgtatcc      3240
     attctggcta cggattttga aaaggctttc gatcgcgtgg ggttacactc agtgttatac      3300
     caactcgtac tctggggcgt tggtccaaga ctttataacc ttataaaagc ctttatgacc      3360
     aacagaactt tcagggtccg agtcaataac tcaacatcaa atctacataa gctccacaat      3420
     ggcattcctc agggttcccc tctttcggtg gtactcttta tgattgcttt tgagcaaata      3480
     tcttcaattt ttaacagaca caaagacatt tccatttcat tgtatgctga tgacgcattt      3540
     atttacacca acaagaaaga tctcaattcc gttaaagata ccttctcaaa cgttctggac      3600
     gaactggaac agtggggcgc ttcatctggg gcatctcttt ccattggaaa atgtcaggtc      3660
     ctacatattt gccgaaaaca aaattgcaac tttcccgaaa ttgtatttaa aaacaaagtc      3720
     attcaacaaa ctaatcattt aaaaatctta ggaattacct tcgactctag gcttacattt      3780
     aaagaacact gcctaagact tagaaagcag ttagaatctc gtctcaatat aattaaattt      3840
     ttaagctcaa aatactctca tgtacatata aatactttaa ttaacataac aagggcatta      3900
     atactctcaa agatagatta cgggctcccg atattcggct ggattgcagc ctccaatatc      3960
     aagagtattc aaccaccata ccacgcagct gtacgcagat ctatctacgc ctttccgacc      4020
     tctccgacca agtgcactct agcggagtcc ggactaccca gcatcaccaa caggataaaa      4080
     gaaactacaa cccgactcat acctaaatta tataccactc caaatcggtt attagctgac      4140
     gacttcaaaa acatatttaa agaaagaagg agatacaaat atccttctac tctccggatt      4200
     tgcgccaact ttagcaagaa attggaccta cccccaccaa acagatttag atcgtccggg      4260
     ccatctccac cctggtctcg gaaccaacct aacatcaaca ccaaactgcg tatctccaca      4320
     aaaagtgata ctcccagctc agttcatcgc acccgctttc aaaacgaaaa agaactcctc      4380
     ggtgaaaaac attggctgtt taccgacgga tccaaaactt tggaatcaac cactttcgca      4440
     gtcatcgacg ctaacaacac catcatagcg ggaggggcgc tccccctcta caattcaata      4500
     ttcgtggcag aagctacggc tatattacta gcctgccgct ttgccaccag taaaaacgga      4560
     gagtttgttg tctgcactga cagtctgtcg tcactcctgg caataaataa ccccgagtat      4620
     cgcgatccca ccataagaga gatacaaaga ttaacaaaag aacatccgaa aaaaataaca      4680
     ctcttttggg tcccaagcca tcaaggcata aagggtaacg aagacgcgga ccaggcagcc      4740
     cacaacattg gcctctcacc aacattcatt ttcactccaa taaacagcaa ggacatacac      4800
     aagctaatag atcgcaactt ggaaaaccaa aagatggagg aatggtccac tttcacccat      4860
     agatactgca aatttaatcc cacttgtaca aaaatacctc tcccagcggc aatcgggaga      4920
     cgacaatgca gtacctttat ccggcttcgt ataggacaca ccaaacacac acacgaacac      4980
     ctattaaaag gcatcaacaa tccgatctgc agtctctgcg gaggaatccc aaacaccgac      5040
     caccttttag acaattgccc tggactggcc aatattagag cccacctgtt cggcacacag      5100
     cccccttccc aaatcctcga ttgcccatcc gtagaaaata ttaaaaaaat ttacgagttt      5160
     ataagtaaat caaagctagc aatataataa caaactaagc ccataaataa accgcaagta      5220
     cagatttaaa cacagcagat tagttacagt cagagtcgaa ggcctccgca gccagtgctc      5280
     ggaaatttag tattaagttt aacattgtat gataagctta atttgttaaa taaataaata      5340
     a                                                                      5341
//
ID   I-3_DTa     repbase;    DNA;    INV; 5352 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.11, Created)
DT   24-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5352
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 99% identical to another copy.
XX
SQ   Sequence 5352 BP; 1756 A; 1422 C; 813 G; 1361 T; 0 other;
     cagtcaccga ctaaccctca tcgagcgcag acgtccgtgc ctaatcccgt gccttatctc        60
     tatttttttc gtggttttta tacacacccg ttcttcgctt ataaacagtt attaattttt       120
     ttttcacgtg caagttccgc tgactattaa ccaaaggtcc aagctcttgt aaccatgggc       180
     ccaggcccac ccagattagg ggacaatcgc tttgcagcgc tcagcgaaag cccctagaaa       240
     aaaaagaaaa gaccctttac taaatttcaa gaagagtttc cagaacttcc ggaaacaaca       300
     aaagaaaacc ctaaattcgt cattatttca tcaaaagacc ccaagaaacc catttcggaa       360
     tattcctgct tcgcagttta tcgtgcgttg aatatcataa gcaaagaaat attgtctatt       420
     tctacccttc gcgatggaaa cctcctaatg ctggtgaaaa ccaaaaacgt tgcagaaaaa       480
     ttcctgaaat ctaaaagtct cgcaggtata tgcgaaattg attgcaaact tcatcagtcc       540
     cttaactttg tgaagggcac tatatatgct ccctttctta taaacgttcc cgatgacgaa       600
     attgtgaaag aactggctga ccaaaatgtg cattccatat ataaattctc taggaaaata       660
     gacggcaaac taaaaccttc tggtgttata ctcgtaacct tcgaccaata caacctacca       720
     agcaaacttg atgtttcctg gcacacagtc aaggtaaggg agtacattcc caatcctatg       780
     aggtgcaagg ggtgccaatt tattggtcat ccaaccaaat tttgcaaaaa ttccgccacg       840
     tgcgaaaggt gtaatctccc ccctcacagc cctgaacctt gcacacgaac tcagtgcgca       900
     aattgcttag gcgaccaccc ttcctcctcc ccctcttgcc caagatatat acaacaaaaa       960
     gaactcatca gaattaaaac tacacgaaaa tgcagtataa gagaagctag actgtttctc      1020
     aaacaacaat ctccgataac aaccaatcac tcacctaatt atgcacatgc tgtgtcaaac      1080
     tcaaacccta cacccattac aaacagtaat actcaaaaag agattactat taatgaaagc      1140
     aacaacaatc attctaaaga gtctgccaac ccagaccctc aataccaatc tcttttaatt      1200
     tcgccttcca caagtaaatc taatacccgt tcggagatta cctctccaaa accctcaaca      1260
     tctaaaaaaa tcgtactaac aagccccact acaaaaacaa ctgacgacct cgtaaatcac      1320
     aatcgcacaa gcaattctct ttcacccact aacagcataa atagtgaata ctcacagcta      1380
     tcagtccctt tgatgtactc tgatttcaaa gagcgcttta aacacagccg ctctcttaga      1440
     tcagaagcag ataaactctt aaacgaaatg aaatcaaaca gtaactccag taaaaactca      1500
     tctgactcag atacatctat ggaagttgaa cccgcgtcag cttccccgga ttctctttaa      1560
     ccatggtcat taacatttta caatggaaca taaaaggaat tttcaataat tatcacgaat      1620
     taaaactact tatagccgaa cgctctcctg acgtattatg ccttcaggag acccacttac      1680
     cacataactt taaaaacttt agatgcccgc cgggttttaa agggtatttt tggaattttc      1740
     cccataatac ttctgcaaaa caaggcgtag ctatactcat aaaacagcaa atcccacact      1800
     cccaaatatt gataaattgt aaccttctct gcactgctat tcaacttgaa ctcactaatc      1860
     ccgtttttat cgtaaatatg tacatccccc catgtcaagg cttttctagc tacgacattt      1920
     ctcatgctct aaatcaaata tccggtccta tactattatt aggagacctt aactcctgga      1980
     gccctatgtg gggttcggct cacgctaatt cccgcggaaa aaaagttgag cgagttatat      2040
     catcatttaa cctagttgtc ctaaacgacg gatctggaac ccacctctca acacacaaca      2100
     ccataaccaa catagatatt tcactaatct caccaagact cgctcaccga agcagttggt      2160
     ccatttgtga tcaattacat ggtagcgatc atttccccat atttatttcc ttagcttttc      2220
     cattctcccc agacataacc ctacccatac caaaatataa aaccgatctc gctgactgga      2280
     acactttcgg caaaatctgc actgaactcg agaccaagtg gaccgccgga tgcctaaacc      2340
     atcaggtcgc tctactctcg aaattcatta gaacagcagc aaactcctcc atcccccaaa      2400
     ccaaacgtat tccccataaa aagaaaattc catggtggag cccggagctt caacagctca      2460
     gggataaaaa gcaaaagctt ttccacacat ttaagtccca aatgtcttcc accaacctca      2520
     taaattataa aagagccaat gccattttca aaaagactgt tctttctgaa aaacgaaaat      2580
     ccctcgaaaa ctttacctca cgtatttctc ccctttccac caccaaaaag atttggtcag      2640
     acattaatcg tctggccggc tctcctaaaa tacccataaa atgcattaaa accacaaacg      2700
     ctttgttaac tgactccagt tgcatatcag aagaattcag ggaagtctgg gccaaatacg      2760
     gagctgatga aaactttagc aacgtctaca taggtctcaa agaatcatat ctgtcctcca      2820
     catacaaccc tacccaaata tctcctacag cactaagtct ggacactcca tttagactgc      2880
     atgaaatcga ggccgctctc caaacagcta agggcaaatg tcctggcgct gatagaattt      2940
     cctatcccat cttaaaacag attcctccat gccttaagca aagactactt aacatatata      3000
     actgcatgtt atccactggc aattaccccc atacctggcg atcttccatc gttattccca      3060
     tcccaaagcc caataaaaaa tcgtcagaaa ttaatggcta tcggccaatt tccctaatat      3120
     cctgcctaag taaaatagtt gaaaaaatga ttgcccttcg actcatgtgg ttcattaacc      3180
     gctacaaact gatcagcggc aaccaagttg cattcaaaag gaaccacagc actcaaaatt      3240
     caacatttcg tgtcgaatgc catttcgacg agaaatcacg tctccattct ggcgacggat      3300
     ttcgaaaagg ccttcgattg cgtgggacta catgcagttc tctcaagact ccagctttgg      3360
     ggcattggtc caagacttta caacctggtt aaagccttta tgacgaagag gacctttaaa      3420
     gtcagagtca acgacaagac ctctggttca gcgaacctgc taaacggaat cccacaaggc      3480
     tcacccctat cggtagtcct tttcatcata gcctttgatc acgtaaacct tgtaataact      3540
     aaacacaagg aaataaacat atctttatac gcagatgacg ctataattta caccaaaaaa      3600
     aaaaaacctt accactgtaa aaaatacttt tctcaaaatt ctccaggact tagaaacctg      3660
     gggattgtct tctggcgctt ctcttgccat agaaaaatgc cacacacttc acatttgtcg      3720
     caaaatccac tgttgctttc caactttgga gcttagaaat aagaccatcg aaccagtcat      3780
     gcatttaaaa atacttggaa tcacgtttga ctctaggttt agctttaaag aacattgtat      3840
     ttctttaaga aaacaacttg aagtccgagc taacataatt aaatttttaa gttcaaaatt      3900
     ttcgcatatc catcccaaca tcctaacaaa cataacccgt tccctaattc tgtccaaaat      3960
     cgaatacgga ctcccaatat atggttggtg tgcagcaaca cacctgaaga aaattcaagc      4020
     accctacaac acctcagttc gcagatcaat taatgcattt ccaacatcgc cagtacggtg      4080
     cattctggcc gaagctgggc taccaagcat tttcgacaga ctaaccgaaa ccaccagcaa      4140
     tctaataccc aggcttttca caagcccaaa tcaatcattg gtaaaggatt tcaaagcttc      4200
     cttcaggaaa actcggactc ccagggttcc ctcaaccctt catagatgcg ccaagcatgc      4260
     agctttcatt gggctatcag tccctaagca gagaaaagta actacgtctc ttccaccctg      4320
     gaaagacgta tcgaaaaaca tcaaaaagga tcttcacttc tatactaaaa acgacacacc      4380
     aagctcaatt ttcaaagccc aatttagtct tctcaaaaac caactgggcc caaggaattg      4440
     gctttactcg gatggttcta aaaccgaatc ttcatctacc ttcgcagttg tcgacaagga      4500
     taacgacatc atcgcgggag gatcccttcc caacatcaac tcgatattta ccattgaggc      4560
     tttcgcagta cttcaggcct gcgtatacgc caacaaaggt aaagggaaat tcgccatctg      4620
     caccgacagc ctttccacca tctcagcgtt ggaaaatccc tggcaaacag atccaacaat      4680
     aagccaaata cggaacatcg ttaccctgag caaatccaaa ataaccatcg tttgggcccc      4740
     cagccaccag ggtattcctg ggaacgaaca agcggacgcg gctgctcgat ttatgagcac      4800
     agccccaacc gttcaattca cacccatcaa cgccagagac atctccaagc taattaaaac      4860
     caccaacaaa caaaagataa tcgctgattg ggaaggtttt acccacagat ataaagcgct      4920
     aaacacagcc tgcgaaaaaa ctatatttcc aaaagacctc aacaaactcg atcgcaggat      4980
     ttacacccgc cttcgcattg gacatacaca ggaaacgcac gaacaccttc ttcaaggatc      5040
     tgcttgccct ccctgtcgct tctgcggaga caggactttt tcaaccgacc atcttctcga      5100
     cagctgccag gccttaaagc ccatacgcac ctccattttt ggatccgtca ccctcccatc      5160
     ttccctactc aaatcctcct ccaaatcaaa tattaaaaga attaaggaat ttgttaataa      5220
     aacccatctc agaatataga cataataatt aaactctaat aacctggccg aaggacttca      5280
     gtttccagtg ccattttctt taaaattaat tttagtattg tatactagct ttaatatgac      5340
     aaaaaaaaaa aa                                                          5352
//
ID   I-3_DYa     repbase;    DNA;    INV; 5298 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5298
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1921-1921 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with ~96% identity.
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..1313
FT                 /product="I-3_DYa_1p"
FT                 /translation="MPPDINRLFKATAIEPKFITVNRTDNKTFENVSPFII
FT                 KKVIDYTCNGEVESCKKTRAGALLIKTKNTTQVLKLLKLTTFADFPITASE
FT                 HKTLNFTKGVIYSNELRNIEDAIILNELNSQKVTEIKKIMKMENNNLKETG
FT                 LIILTFASLNLPETLMIGYERVNIRPYIPLPLRCRNCLRLGHPTSTCKSTK
FT                 LCNNCSAEQHTIENEPCIKDKFCINCKYDINKQNNHSPTDKSCPAFIKQKE
FT                 ITSIKILEKVDHKTATSIYFSRHLHQDSKFSTIAAAQPSHQTATTYKPTNK
FT                 STTLSSNTSNTNQQQRTITTYQDLETEMDTLDFPTTSKTISSTKEGLSEEL
FT                 KLRLYGSKQATLTKPLKCKDKNESKPKKK"
FT   CDS           join(1566..1868,1810..2640,2745..3107,3100..3402,
FT                 3374..3913,3995..4294,4535..5134)
FT                 /product="I-3_DYa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKILQWNINGYLNHYDQLQILIKSHNPKIISLQETH
FT                 LLLTTNIPIPINFTLYNANSSINRIHNSIQQQNIPINCQNFDNIAVQVHSK
FT                 INIYYNFFVHTSQQYKFTQKSIFTIISSYIPPNRTFNLKNLKDTYNNLQPP
FT                 VLITGDFNSWHRSWGSQNNNSRGITLFKFINQSSLTTLNDGSPTHFSTHHT
FT                 FTNIDLSLASPSIMLHCKWSKNNSLSGSDHYPIHISLFDDTDFIPPKTCPK
FT                 FNLNKANWPLFKEITETLSSNRPPCNNTNKEAANITKILIHGANQAIPQYQ
FT                 QQRKTKLVPWWDPTLQKLKDNKQTAWIKLNSDINTTNIINYKKANAKLGKI
FT                 RKRISMQNFTSEIHPNTPISKIWSTLPLLRLKITTTNFPAIFRQHKSISRP
FT                 LNTLIPSPLALNIEKDITMVELLSALNQLKGKTPARSHNLPNGLPLNLLQR
FT                 LLNLFNNILNTQIPQQFKVSCIIPILKPNMNKTSINAYRPISLNPCIAKYL
FT                 TKSQNHSKTAMVDCHKRQLLNSRQMGFRKGKSVYDCLAVLDYHTTSSLSTK
FT                 SHASIISLDFAKAFDRVGIHSIIDELIEWKIGPRIIKYISNFLTNRQNYCV
FT                 SQQTDKITVLANNVYSSQQPLNNGIPQGSPLSVILFATAFNKLNKLIDKHK
FT                 NCQFTAYADDYTIIYKLNKKQNTLNIDPLLTDIKQWCNYSGASLSIDKCKH
FT                 LHVCRKRICYLTFQSNTYTLQNVDSLKTLGITIDNKYRWSKHIDNLTLQLS
FT                 NRLNIIKCLSSNKCRYNTLCSKSNNNVKNTRSLLFSSTPINNLLHEANILP
FT                 IEYRTAHAIQKNFKLIMNSKQSPIETIYNXIIKAKRIPKIKSSLHNTIYXC
FT                 KQLQIQISPITTTKESTPHWVNQRQVVHAVKKEENTVCTDSLSSLKAIQNG
FT                 NYHNHYTNSIRKIINKYKTDKLILLWVPGHCGIVGNELADNTAKNTHNFPL
FT                 IFENNYNTSDIXSFIKXSTQQYFKLILNNASQYYKAICLDKATKSTIKNTS
FT                 RIDSLKFTRLRVGHTNLTHSHLLSNPKILPPLCTKCNSTLSITHILIDCPL
FT                 YNTERSLYLQKKFKRNNIIPKHR"
XX
SQ   Sequence 5298 BP; 2152 A; 1303 C; 611 G; 1227 T; 5 other;
     cagtttcact ccaagcttcg agaagtaaag acgtgtgact gcttagcagc gagtaataat        60
     ctcttatcag tgcttagcaa caacaacaac atccaacaca actgttcatc aggctatttt       120
     tagaaaagac acaaacaaca attcgtaaaa caccaacaag tgaacaagtg cagtcgggca       180
     ataggccaac aacaacaatg ccacctgaca taaacagact gttcaaagca acagcaattg       240
     aacctaagtt tataactgtg aatagaacag acaacaaaac gtttgaaaat gtttcaccat       300
     ttattattaa aaaagtaata gactatactt gtaacggaga agtcgaatca tgcaaaaaaa       360
     caagagccgg tgctctgcta attaaaacga aaaacactac acaagtccta aaactcttaa       420
     aacttaccac ctttgccgac ttccctataa ctgcaagtga acacaaaaca cttaacttca       480
     ctaaaggagt tatctactcc aacgaactgc gcaacatcga ggacgcaatc atcttaaacg       540
     agctaaattc ccaaaaggtc actgaaataa aaaaaattat gaaaatggaa aacaacaacc       600
     tcaaagaaac cggtctaatt atcttaacat ttgcatcact aaacctacca gagacactaa       660
     tgattggcta cgaacgcgta aatatccgac cgtacatccc actaccacta agatgtcgca       720
     attgcttaag acttggacac cccacatcca cttgcaaatc caccaaatta tgcaacaact       780
     gctctgccga acaacatacc attgaaaatg aaccttgcat taaggacaaa ttttgcatca       840
     actgcaaata tgatatcaac aagcaaaaca atcacagccc tacagacaag tcatgcccag       900
     ctttcataaa gcaaaaagag ataacatcaa taaaaatctt agaaaaagta gatcataaaa       960
     cagcaaccag tatatatttc tcacggcact tacaccagga ctccaaattc tccacaatag      1020
     cagcggccca accaagtcat caaacagcca caacttacaa accaacaaac aaatctacta      1080
     ccctcagcag caacacatca aacaccaatc aacaacaaag aacaataaca acataccaag      1140
     atctagaaac tgaaatggac acattggatt tcccaacaac atctaaaact atatcatcaa      1200
     ccaaagaagg actatctgaa gaactcaagc ttagattata tggtagcaaa caagctactc      1260
     tcaccaaacc actaaaatgt aaagataaaa atgaatctaa accaaaaaaa aaataacaga      1320
     aacaaaaaca ccaccctaaa cagtgatagc gaaagcatat aacacccgct aacctgcata      1380
     ctggtgccct tgatggccgc ggtgcgcttg gagcgccaaa cactcagaca agtgtctcct      1440
     atctaatgat attatatcac aagatagagg acacataaaa atccacccat aatgcaactg      1500
     aaaatctctt attagtatct taattwaaaa aaacctatat aaactccctt tattatatat      1560
     aattaatgtt aaaaatactc caatggaata ttaatggata tttaaaccac tatgatcagt      1620
     tgcaaatcct tataaaatct cataatccaa aaataatctc cttgcaagaa actcacctac      1680
     tcctcacaac aaatatacca atcccaatca atttcacatt atacaacgca aattcctcta      1740
     tcaatagaat acacaactca atacagcaac aaaacattcc tataaactgt caaaacttcg      1800
     acaacatagc agtacaagtt cactcaaaaa tcaatattta ctataatttc ttcgtacata      1860
     cctcccaata ggacattcaa cctaaaaaac ctaaaagaca catacaacaa ccttcaacca      1920
     cctgttttaa taacaggaga cttcaatagc tggcacagat cttggggatc acaaaacaat      1980
     aactccagag gtattacact atttaaattc attaatcaat cctctctcac aaccctcaac      2040
     gatggctccc caactcactt tagcacccac cacacattca caaacattga cctctctcta      2100
     gcttcaccct ctataatgtt acactgtaaa tggagcaaaa acaactctct ctcaggaagc      2160
     gatcactatc caattcacat tagcctattc gacgacactg actttattcc tccgaaaaca      2220
     tgtccaaaat tcaacctcaa caaagccaac tggccccttt ttaaagagat aacagagaca      2280
     ctctcatcca atagaccacc atgcaataac actaacaaag aagctgccaa tatcacaaag      2340
     atcttaatcc atggggccaa ccaagcaatc ccacaatacc aacaacaacg aaaaaccaaa      2400
     cttgtcccat ggtgggatcc tacgctgcaa aaattaaaag acaataaaca aacagcatgg      2460
     attaaattaa atagcgatat caacacaaca aacattataa actacaaaaa agccaatgcc      2520
     aaactaggaa aaattagaaa aagaatatct atgcaaaact ttacgagtga aatacaccca      2580
     aatacaccaa ttagtaaaat atggtcgaca ttaccgcttc tgcggcttaa aatcacgaca      2640
     tgatattcac tgcctctcta aactaaatga tcaaactact aacatacaaa ataggaatga      2700
     tatagctaac acgctctgct ctcattggtc agaagcagcg ctagaccaac ttcccggcaa      2760
     tattcagaca acacaaatcc atctcgcgac cacttaacac cctcataccc tcgcccctag      2820
     cattgaatat agaaaaggac atcaccatgg tcgaactcct atccgctctc aatcaattaa      2880
     aaggtaaaac cccggcgaga tcgcataacc tacccaatgg cctccctctc aaccttctcc      2940
     aaagactcct taacttattc aataacatcc tcaacacaca aattccccag caattcaaag      3000
     ttagctgcat catacccatt ctgaaaccaa atatgaataa aacatcaata aacgcctatc      3060
     gccccatctc tctcaatccc tgcattgcaa aatacttgac aaaatcatag caagacggct      3120
     atggtggatt gccacaaacg gcaacttcta aatagccgcc aaatgggctt cagaaaaggg      3180
     aaatcagtgt atgactgtct agccgtatta gactaccata ccacgtcctc cctttcaact      3240
     aaaagtcacg cctctattat ttcgctagac tttgccaagg catttgacag agtcggtatc      3300
     catagcatta tcgacgaact tatcgaatgg aaaataggac cgagaataat caaatatatc      3360
     tctaacttcc taacaaaccg acaaaattac tgtgttagcc aataatgtat actcctccca      3420
     gcagccgctt aacaatggaa tcccacaagg ctcacccctg tcggtgattt tattcgctac      3480
     agcctttaac aaattaaaca aacttattga caaacacaaa aactgtcagt ttacagcata      3540
     tgctgatgac tacacaatca tctacaaatt aaataaaaaa caaaatacac ttaacataga      3600
     cccattactc actgacatca aacaatggtg caactactca ggagcatcac tatcaataga      3660
     caaatgcaag catttgcacg tctgcaggaa aagaatttgc tacctaactt tccaatccaa      3720
     cacatacacc ctacaaaacg tagactcact aaaaactctc ggtattacaa ttgacaataa      3780
     atacagatgg agcaaacaca tcgacaatct tacactccaa ctttccaata gacttaatat      3840
     aataaaatgc ctatccagta acaaatgcag atacaatact ttatgtagta aaagcaataa      3900
     taatgtcaaa aattgatttc gggctccacc tttatggtac agcgcccaaa tcagccctca      3960
     ataaattaaa aacaatgtac cactcagcta ttagactcgc tctttgctct tttcttcaac      4020
     cccaataaac aacctgctac acgaagcaaa cattctacca atagaatata gaacagctca      4080
     tgccatccaa aaaaacttca aattaatcat gaattcaaaa caatctccca tagaaactat      4140
     ctacaacmaa attattaaag ctaaaagaat tccaaaaatc aaatcttcgc tccataacac      4200
     aatttackta tgcaaacaac tccaaatcca aatttcccct ataacaacaa caaaagaaag      4260
     taccccgcat tgggttaatc aacgacaggt cgtttaacac ctcacttcac tatacaacca      4320
     aagcaaacac tccaccaata atatatcaac ataaatttag agaatataaa aacacaatga      4380
     aagatcgcat attcttatac actgatggat caaaatcatc tgacggtgct tcttacagtg      4440
     taacaactga aaaagaaata atctcctacc aaatactacc agaatacacc tcagtattta      4500
     caacagaact agccgcgata ttagcagaat gtaacatgca gtaaaaaaag aggaaaacac      4560
     agtgtgcaca gactcccttt cttcattgaa agcaatacaa aacggcaact accataacca      4620
     ttatacaaac tcaattagaa aaattataaa taaatataaa accgataaac taatactgct      4680
     ttgggtccca ggacactgcg gtatagtagg aaatgagtta gcagacaata cagcaaagaa      4740
     cacccataat tttcctttaa tcttcgaaaa caactacaat acatctgata tawacagctt      4800
     cataaagmaa agcacccaac aatactttaa actaatactt aacaacgcat cccaatacta      4860
     caaagcaatc tgccttgaca aagctacgaa atcaacaata aaaaatacat cacgaatcga      4920
     ctctttgaaa ttcacaagac taagagtagg acatacaaac ctaacccata gccatctcct      4980
     ttctaatccc aaaatcttac caccactttg tacaaagtgc aattcaacac tctccattac      5040
     acacatactc atcgattgcc cactatataa tacagaaaga tccttatatc tgcaaaaaaa      5100
     atttaaaaga aataacatca ttccaaaaca tagataaaac aatagagttc ctcaaacaaa      5160
     caaatatttt ccatctaatt taattattac aaatccaaat catgtaaata aaaaaaaaca      5220
     aaaaaatatt tagtattaaa acatgtttat atataaatat gaatatataa taagtatacc      5280
     ccacacattt aaaaaaaa                                                    5298
//
ID   I-3_HMM     repbase;    DNA;    INV; 2447 BP.
XX
AC   .
XX
DT   04-SEP-2012 (Rel. 19.10, Created)
DT   04-SEP-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2447
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2796-2796 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..1537,1408..2313)
FT                 /product="I-3_HMM_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="FFSLNFVPKQWRQIRVITIPKPGRDLSTAAAIRPISL
FT                 MSCMCKIFHSIINKRIEWFLEKGNFFAEETTGFRKTRSCLDSLNSLISNIQ
FT                 IGFSNDLSTIGCFVDLDNAYNNVDITLLLLTLDKLGIGSVYCKYLWKFLQE
FT                 RYLTIEGPDYVITRTCRQGLAQGDPLSPLLFNVATINVCKSMPASISISQY
FT                 ADDFVIYKTSTINIAATELQHSLNILSDNLNSLNLDISPNKSKICIFSKGH
FT                 KKYSAHLSIMGKRLEVVDTVRYLGVWLDRSLRWGRHINEISKKVLKFINIF
FT                 KMLAGSSWGVHPKHLRLLYISLIRSRIDYASFFYDSSANIHLGKLDKIQNQ
FT                 VMRIIGSFIKTTPIHVMESELCLQPLFLRRRYLAGKFWLKTKSRQTNSGGL
FT                 NIISKLASLFNTSRYWHNKKTPALILVHNCLKDFKINTSKNLGMFSLNTWV
FT                 SNIDIQSFVKYDVDFMTGPKRRFDCVLLKKNFLILSHPNTVIIKRYIPMVL
FT                 RIRRDWGRHFMTMNKRLRTVKKKFSNFITSQYSHYKKIYTDGSKDKEGLGA
FT                 SFYDYEQKIAVKFQIDPNMCIMDAELIAIAEALSYIESTDHINTVILTDSK
FT                 SSLQHLARCTSTFRGTPIAYTILDNVLRLRSLGRNVVLQWIPSHVGLEGND
FT                 IADLLAKQAISDGIPIISSPFYTNFIAKIKQICHTYWAEYFDKRSLEKGVW
FT                 YKTIQPHPLSSPWINNETLCRKKTIAALRLRSGHIPGNKFLYLMGKSTTAS
FT                 CDFCNTNSVDDVYHILMECVQNEALRTKISCRFQEIGFCNAVLASPLSDEA
FT                 NILYELAISRLT"
XX
SQ   Sequence 2447 BP; 821 A; 391 C; 426 G; 809 T; 0 other;
     ttttttctct cttaattttg tcccaaaaca atggcgtcag attcgcgtta taacgattcc        60
     taaaccaggt cgtgatttat caactgctgc tgcaataaga cctatatccc tgatgtcttg       120
     tatgtgcaaa atttttcatt ccataattaa taagagaatt gaatggttcc tggaaaaagg       180
     gaattttttc gcagaggaga caacaggttt tagaaaaaca cgctcttgtc tagatagctt       240
     aaattcatta atttctaata ttcaaattgg tttttctaat gatttaagta ccataggatg       300
     ctttgtagac ctagacaacg catataataa tgttgatatt accttactat tattaacctt       360
     agataaactc ggcataggat cagtgtattg taagtatcta tggaaatttc ttcaagaaag       420
     atacttaaca attgaaggtc ctgactacgt tattaccaga acttgtaggc aaggattagc       480
     tcaaggtgat ccgttatctc cattattatt taatgtagct acaattaatg tttgtaagtc       540
     aatgcctgct tctatatcta tctcacaata tgcagatgac tttgttattt ataagacctc       600
     aactatcaat atagcagcta cagagttaca acattcttta aatattttga gtgacaattt       660
     gaacagcctt aatcttgata tttctcctaa taaaagtaaa atttgtattt tcagcaaagg       720
     ccataaaaaa tactcagcgc atttatcgat tatgggcaaa cggttagagg tagttgatac       780
     agtccgatat ctcggtgtgt ggttggatcg ttcgcttagg tggggaaggc acattaatga       840
     aatatctaaa aaagttctta aatttattaa tatttttaaa atgttggctg gttctagttg       900
     gggtgtccac cctaaacact taagattatt atacatttcc ttaattagaa gccgtattga       960
     ttacgcaagt tttttttatg atagtagtgc aaatattcat ctagggaaat tagacaagat      1020
     acaaaaccaa gtcatgagaa ttattggtag ttttattaaa acgacgccca ttcatgtgat      1080
     ggaaagtgaa ttgtgtttac aaccactatt ccttcgtcgt cgttacttag ctggaaaatt      1140
     ttggctaaaa actaaatctc gtcagaccaa tagtggaggc ctaaatataa tttctaaact      1200
     tgcttcatta ttcaatactt ctagatattg gcacaataaa aagacgcccg cattaatttt      1260
     ggttcataat tgtttaaaag atttcaaaat taatacatca aaaaatttag gtatgttttc      1320
     attgaatact tgggtgagta atatagatat tcaatctttt gttaaatatg acgttgattt      1380
     catgacagga cctaaaagac gatttgattg cgtactgtta aaaaaaaatt ttctaatttt      1440
     atcacatccc aatacagtca ttataaaaag atatataccg atggttctaa ggataaggag      1500
     ggattggggg cgtcatttta tgactatgaa caaaagatag ctgttaaatt ccagatagac      1560
     cccaatatgt gtataatgga tgctgagcta atcgctatag cagaagctct gtcatacata      1620
     gaatcgactg atcatattaa tacagtgata ttgacagact ctaaaagttc gctccaacat      1680
     ttggctcggt gtacctcgac atttcgagga actccgatag cctatactat attggacaat      1740
     gtcttgagat tgcgatcttt gggaaggaat gtagttttgc agtggatacc gtctcatgta      1800
     ggtctggagg gcaatgacat tgctgattta ttagccaagc aagcaatatc tgatgggatt      1860
     cctattatca gttctccttt ttacactaat tttattgcca aaataaaaca aatttgtcat      1920
     acgtactggg cagaatattt cgataaaaga tccttggaaa aaggtgtctg gtataaaacg      1980
     atccaaccac acccgttatc atcaccatgg ataaacaatg aaactttatg taggaaaaag      2040
     acaatcgcag cgcttagact tcgttctgga cacattccag gcaataaatt tttgtattta      2100
     atgggcaagt caacgacagc tagttgcgac ttttgcaata ctaattcagt tgatgatgtc      2160
     taccatatat tgatggaatg tgtccagaac gaagcgctta ggacaaaaat aagctgcaga      2220
     tttcaagaaa taggtttttg taatgctgtt ttggcttcac ctctttcaga tgaagccaat      2280
     atactttatg agttagcaat atcccgctta acttaagata ttaaataaga ttaattaaga      2340
     tatattgtat ttaaattata ttttatttaa gttaaactta ccagggcgac atattcgcat      2400
     aagcgacaaa gccctttaat tagattaaaa aaaaaaaaaa aaaaaaa                    2447
//
ID   I-3_LMi     repbase;    DNA;    INV; 5769 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5769
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3136-3136 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(156..929,854..1324,1276..1827)
FT                 /product="I-3_LMi_1p"
FT                 /translation="MDSGPFGEGGCLPPDEDLRSRELQSAEALLNMSRDRE
FT                 MDDVLQFQLLNTPLPEDLHMEDETNQDGNARDPVHQSIYYWHAAETGNIPN
FT                 KLPRHTETDLQTKRIRVDSPTNVTSGAERNSHTSRNSVLPXFGVLQSSGSS
FT                 DQNVSELDINARNPNLSSRNDTYYNNSDLGPFIIIVESAEKSIGNLHPMSI
FT                 GKIIFSAGVIAKQHILDIAKAGRNRVRIETNSGLAANKLLDSKLWMERNLK
FT                 VFIPKSVITKTRDYQGCIMDGEEFKSVHSKERDYKNEGLSGMLIYCSLRRR
FT                 YCRKSKCCPCVTCETVHKKISEWXSLPNPCMCSNIPSTTSSTICFNTRNAL
FT                 CSTTVCSVCSXMLQMFMVQSLQCSVSWNATLCKMWQAHEVSHCQSTTLKCV
FT                 HCSGNPVQLIGAVLNLRNGQTSCSTDRCCPEFKKWADLKYIMAMNNVPLQT
FT                 AIKQYQNRGYSQAVQNLVLDTRSQKQFPTLPQTNAPYGTTNLQSTCPISEF
FT                 SVQGSTCVTPATFLSPPPPPPLQQLQPNQTSTDHQQLKPCSVAPLSSTPPR
FT                 NLPQQPAATSHVSSEYQNHWIPNQHDKRQFLVILFHHNTIGYTTKCRLLNN
FT                 W"
FT   CDS           join(1909..2010,1976..4675,4624..5631)
FT                 /product="I-3_LMi_2p"
FT                 /translation="MGIRELILSTLTSSSSKWLTLLKEYYSGTPFGEIKNI
FT                 TVERRSVRSNKESLLHCLKALEITVCVLVETWLHPSQHFSVPGYHLLRSDR
FT                 EDGYGGAAILIKHGIDYTPIHLIPCEESINAIAVTLRIAGRNINLLSIYRP
FT                 SDKSVTSEQLRGLIGSIEHPKIITGDLNAHHSLWDPSYTDRIGRLLVEVIE
FT                 EDNLTILNDGTPTRITRPGQRPSAVDVSFASPAIAVTTTWEVLQEPLGSDH
FT                 LPILITLSHVAHADKNHSPIYKWNTRKADWDKFKEKIAEYLYNYVERDNAY
FT                 EDYINLLQMMEHAANSAIPRCSTFRNRSMRSPVWWDEECDTAIAKRRQSLK
FT                 TYRRYPTFENYMQHTRVQASVKRLLKQKKRTSWKIFCDSLNTTTTMSSIWN
FT                 KINRIRRTPIVLVSLTLSPHVLTKILQSVTPDSVEHDMEVFQPENDLPHVL
FT                 NEPFNEKDLNRALLRDTNSAPGPDNISYKMIRLLEVGKQLLLKVYHAVWFL
FT                 HTDIKELKTGRIVPIYKSGKPREEATSYRPITLLSCFYKTFECMIKHRLEW
FT                 WVEHQNLLPNGQYGFRKGRGTTDALIELVTDIQISLSENKYFLVVYTDLTK
FT                 AYDCVLLPRLAQQLKNLGMPNVFIHNLCHLLSNRALIIRRDDGYIGPRYTS
FT                 KGLPQGSILSPLLFNLYTADLHSLMPNSCKVIQYADDLCFYTTSRNLMECQ
FT                 LLMSVAMEQFQSWLNRNSLEISPEKSAVCIYTRHRWQAPKTMSLGPFRMPV
FT                 VQVVKYLGLLIDQKLKWSTHVKYIIQKCEKAINVLHSITGGGWGADPRVCM
FT                 TLYRALIRPHMDYGCLCYGSASDSVLQMLDRCQFKAIRCCLGAFISTPTNA
FT                 LLVEANEPPLDLRRQYIGSKYLLKRAQFEQDPLLSRIRALSEICFTSRYWL
FT                 RKKLPPLAYIFYDILPQCHRIATSRTIQFSYFTTVSQNRNVSHHPVFMTDY
FT                 RNTMIELDIRTNISYMESLLLKNFLRDWENALHIYTDGSHSKEGVGSAYYD
FT                 EHTQYYAKFQLPLEASVLTAELTAILEGLKYAGRMDHNTTIILSDSRSALL
FT                 LIQNHAINNTNNYLVYQILDRIGALQRCNKKIIMVWVKGHHGIKGNEIVDY
FT                 LAKDAIHHGTKFYHHVPYTDLLRDVRQQVRTLWNNKWXLSNQLRGKHYADI
FT                 QPCIPARPWYSLGLFNRKFLVTMFRLRFNHGRFRQHLCRLNLIVSPLCECG
FT                 AEEDVDHVVFGCSQRYDATTKFLQYLVQNRYHLPTSVKTLLATQDISCTNI
FT                 YIGFWQLSA"
XX
SQ   Sequence 5769 BP; 1801 A; 1211 C; 1150 G; 1601 T; 6 other;
     tctctggttg gcaacgaagt aaataagagt gctactgtag atttattgta gattttaata        60
     cgattaaaaa ggaaaaactt ttcttaasat tttttagagt gtctgtagta agtttaaagc       120
     tagtgtaaca attttctcga actagttacc tagtgatgga cagtggacca ttcggggagg       180
     gagggtgtct cccccccgat gaagatcttc gatctcgaga actacaaagt gcagaagctc       240
     tcttaaatat gagcagggac agggaaatgg acgacgtgct tcagtttcag ctactaaata       300
     ccccacttcc agaggatcta catatggaag acgaaacaaa ccaggatggt aatgcaagag       360
     acccagtcca ccagtcaatc tactactggc acgctgcaga aaccggtaac attcctaaca       420
     aattaccaag acacacagaa accgatttgc agactaaaag gattcgagtt gactccccaa       480
     cgaatgttac tagtggagct gagaggaatt cccatacttc acgtaattca gtacttccaw       540
     cttttggtgt tctacagtca agtggaagca gtgatcagaa tgttagtgag ttggatataa       600
     atgctcggaa ccctaatctt tctagcagaa acgacacata ctacaataac tcggatcttg       660
     gaccttttat aattattgta gaaagtgcag aaaaatctat tggtaactta cacccaatga       720
     gcatagggaa aataatattt agtgcaggtg tgatagccaa acaacatatt cttgacattg       780
     ccaaagcagg gagaaatcgt gtaagaattg aaacaaattc tgggttagca gccaataaac       840
     tgcttgatag taaattatgg atggagagga atttaaaagt gttcattcca aagagcgtga       900
     ttacaaaaac gagggattat cagggatgtt gatatattgc tcactgagga ggagatactg       960
     caggaaatcc aagtgttgcc cctgtgttac atgtgaaacg gtacacaaaa aaatctcaga      1020
     atggagmagt ttacccaatc cctgtatgtg ttctaacatt ccaagcacaa catcttccac      1080
     aatatgtttc aatactagga atgcgctgtg cagtacaacc gtttgttcag tctgttctsc      1140
     aatgttacaa atgtttatgg ttcaatcact ccagtgctca gtgtcgtgga acgctacgtt      1200
     gtgcaaaatg tggcaggcgc atgaagtttc acattgtcag agtactacat taaaatgcgt      1260
     acactgttct ggtaatcctg ttcaactgat cggtgctgtc ctgaatttaa gaaatgggca      1320
     gacttaaagt acattatggc aatgaataac gttccgttac aaacggcaat aaaacagtac      1380
     caaaatagag gctattctca ggctgtgcag aatctggtat tggatacaag aagtcagaaa      1440
     cagttcccaa cacttccgca aacaaatgcc ccatatggga caacaaattt acaatccaca      1500
     tgcccgatca gtgaattctc agtacaggga agcacgtgcg tcacacctgc cacattttta      1560
     tctccgcctc cccctcctcc tctacagcaa ctgcagccta atcaaacatc tactgaccac      1620
     caacagctga aaccttgttc tgtagctccg ctctccagca ccccgccacg taacttacct      1680
     caacagccag cagctacgtc gcacgtctct tctgaatatc aaaaccactg gataccaaac      1740
     cagcatgata aacggcaatt tctggtaatc cttttccacc acaataccat aggttatacg      1800
     acaaagtgcc gattactgaa caattggtaa atcacattta taccataatc ttgaagatac      1860
     ttccggcmag taaatccgac gatacaaccc acgtcctcca tacttgatat gggtatcaga      1920
     gaacttattc tttcgacgct cacttcatct tcttctaaat ggttaacgct attaaaagaa      1980
     tattacagtg gaacgccgtt cggtgagatc taataaggag tctctacttc actgccttaa      2040
     ggcactcgaa attacagttt gtgttcttgt agaaacatgg ttacatccgt ctcagcattt      2100
     ttcagttcct ggatatcact tgctacgtag tgatcgcgag gatggctatg gaggtgctgc      2160
     tatcttaatt aaacatggga ttgattacac gccaatccac ttaattcctt gtgaggagag      2220
     tatcaatgca atagctgtta ctttaaggat tgctggacgc aatattaacc tcttatcaat      2280
     ataccgacca tcagacaaga gtgtaacttc tgaacaattg cgtggtttga tcggcagtat      2340
     tgagcatcca aagataataa caggtgatct caatgcacat cattcccttt gggatccatc      2400
     ctatactgat agaataggaa gactacttgt ggaagtaata gaagaggata atcttacaat      2460
     actgaatgat ggaacaccta ctcgaatcac taggccaggt caacgtccca gtgccgtgga      2520
     cgttagtttt gcttcacctg ctattgcggt gactactact tgggaagtat tacaagagcc      2580
     tctcggctcg gaccacctac caattttaat aacactatca catgtagctc atgctgataa      2640
     aaaccattct cccatttata aatggaacac aaggaaagct gactgggaca aatttaaaga      2700
     gaagattgca gaatatttat acaactatgt ggaacgtgat aatgcctatg aagattatat      2760
     aaatttactt caaatgatgg aacatgcagc caattctgcg attcctcgct gttcaacttt      2820
     tcgcaatcgc agcatgcgct ctccagtttg gtgggatgaa gaatgtgaca ctgctatcgc      2880
     caaaagacga caatcattaa agacttacag gaggtaccct acattcgaaa attatatgca      2940
     acacactcgt gtacaagcat cagtgaagcg tttattgaaa caaaagaaaa ggaccagctg      3000
     gaaaatcttt tgtgatagcc taaatacaac cactacaatg tcctcaatat ggaataagat      3060
     caatcgtatc cgcagaacgc caatcgttct ggtatccctc acactctcgc cgcatgtttt      3120
     gacgaaaatt ttacagtctg taacgccgga ttcagtggaa cacgatatgg aagtttttca      3180
     accagagaat gatctaccac atgttcttaa tgaaccattc aatgaaaagg accttaatag      3240
     ggcattgtta cgggatacaa attctgcccc cggaccggat aacatatcgt acaaaatgat      3300
     tcggctactc gaggtgggga aacagctatt acttaaagta tatcatgcag tatggttcct      3360
     tcatacagat ataaaagaac taaaaactgg acgaattgtt cctatttaca agagtggaaa      3420
     accgcgggaa gaagctacat catacaggcc aataacgtta ctgtcatgct tttacaaaac      3480
     ttttgagtgc atgattaaac atcgattgga atggtgggta gaacatcaga acttacttcc      3540
     aaatggtcaa tacggcttta gaaagggtcg tggtactact gatgcactta ttgagttagt      3600
     tactgacatc cagatttccc ttagcgaaaa caagtatttc ctggttgttt atactgacct      3660
     caccaaagcg tatgactgcg tattgctccc gcggctagcg cagcagttga agaaccttgg      3720
     catgcctaat gtttttatcc acaatctctg tcatttactg agcaacagag cactgattat      3780
     acgacgagat gacggatata taggaccccg gtacacgagc aaaggtctgc cgcaagggtc      3840
     tattttatct ccattattgt ttaatctata cactgcagat ctccattcgc ttatgccaaa      3900
     cagttgtaaa gtgatacaat acgcagatga tctctgcttt tatactacaa gcaggaatct      3960
     catggaatgt caacttctaa tgtctgttgc tatggagcaa tttcagagtt ggttgaatcg      4020
     gaactccttg gaaatatctc cagaaaagtc cgcagtttgt atttacacgc gacatagatg      4080
     gcaggcacca aaaacaatgt cactgggtcc ttttcgaatg cctgttgtac aagttgtcaa      4140
     ataccttggc ctccttattg atcaaaagct caagtggtct acgcatgtga agtacatcat      4200
     acagaaatgt gaaaaggcaa ttaatgttct tcattcaatt acaggaggtg ggtggggtgc      4260
     cgaccctaga gtatgtatga ctctttatcg tgcattaatt cgaccacata tggattatgg      4320
     atgtctttgc tatggatcgg cttctgattc tgttctacaa atgcttgaca ggtgccaatt      4380
     taaagcgata agatgctgcc tgggtgcctt catatcaact cctacgaatg ctctacttgt      4440
     tgaagctaat gaacctccgc tagacctcag aagacagtac attggatcaa aatacttact      4500
     caaaagagct caatttgaac aagacccttt gctctcgagg attcgagcgt tgtcagagat      4560
     atgttttact agtagatact ggcttagaaa gaaactccca ccactagcat acatctttta      4620
     tgatatttta ccacagtgtc acagaatcgc aacgtctcgc accatccagt tttcatgacc      4680
     gattacagga atacaatgat agaattagac attcgaacga atatttctta catggagtcg      4740
     cttctgttga agaacttttt acgtgattgg gaaaatgcgc tccacattta cactgatgga      4800
     tcacattcta aagagggcgt tggaagcgct tattacgacg aacatacaca atactatgca      4860
     aaattccagc tcccactgga agcttctgta cttacagcag agctcactgc aatactagag      4920
     ggactcaaat atgctggcag gatggaccat aatacaacca ttattctatc agactcgcga      4980
     tcagcactgt tgctcataca gaatcatgct ataaataata ccaacaacta cctggtgtac      5040
     cagatattag accgcattgg agccttacag cgttgtaata agaaaatcat tatggtgtgg      5100
     gtcaagggac atcacggtat taagggcaac gaaattgtcg attatcttgc caaggatgcc      5160
     attcatcatg ggacgaagtt ttaccatcat gttccttata cagaccttct acgcgacgta      5220
     cggcaacagg tcagaacctt atggaacaat aagtggcamc tatcaaacca actgagagga      5280
     aagcattatg cggatattca accatgtatt cctgctcggc cttggtattc tctcggcctg      5340
     ttcaatagaa aatttttagt cacaatgttt cgccttcgat ttaaccatgg gcggttcagg      5400
     caacatttgt gccgactgaa tctcattgtc tcgcccctgt gtgagtgtgg cgcggaggag      5460
     gatgttgatc acgttgtttt cggatgttca caaagatacg atgcaacaac taaattttta      5520
     cagtacttgg tgcaaaacag atatcaccta cctactagtg taaagacgtt actggcaaca      5580
     caagatatat catgtacaaa catttatatc ggtttttggc aactgagcgc ataaagatat      5640
     aatttttgtg tttaataatt cattttttgt aactttaatg taatttataa aggaactgtt      5700
     aattgtattc aaatgtgtat taaagattgg ctgaatgggt tatgcccaaa ggccataata      5760
     aagaaaaaa                                                              5769
//
ID   I-3_PPo     repbase;    DNA;    INV; 716 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-716
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3113-3113 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..254,217..630)
FT                 /product="I-3_PPo_1p"
FT                 /translation="XHLARCASGYRGLTIAYDVLKSIYTLLXSGSXVRLQW
FT                 VXAHVGXKGNELADRTAKLAAVSDNVLDFIPDHVEYXSKFKISCIKINIYL
FT                 NSKFHASKFNXMCQEIXKXKGIWYRAIQSEPLNYPWSSGGLSRRHVRAALR
FT                 LRSGHYPTASFGYLMRKNLSPNCEICRKPEDIQHLLLECERNRRERELLFR
FT                 ELKLNPSDVGIIMSILAEPASEAAVRLCQLVS"
XX
SQ   Sequence 716 BP; 217 A; 145 C; 162 G; 182 T; 10 other;
     tamaacatct agctcgttgc gcctctggtt acagaggact aacgatagcc tatgatgtcc        60
     taaaatctat ttataccttg ctgaawagtg gttcagakgt gaggctgcaa tgggttscgg       120
     ctcatgttgg tstaaaggga aacgagctgg cagatcgtac agctaagcta gcggctgtta       180
     gtgacaatgt tctggacttt attcctgatc acgtagaata twtatctaaa ttcaaaattt       240
     catgcatcaa aatttaatma catgtgtcaa gaaattkcaa aacakaaagg catttggtat       300
     agggcmatac aaagcgagcc actcaattat ccctggtcct cgggcgggtt gagcagaaga       360
     catgtgagag cagcgctaag actacgttct ggccactatc caacagcaag ttttggatat       420
     ctgatgagga aaaacctgtc gcctaattgc gagatatgca gaaagccaga agatatccaa       480
     cacttgctgt tggagtgtga gagaaacaga cgggagcgcg agctactttt ccgggagcta       540
     aagctcaacc cgtccgatgt aggcataatt atgtcaatat tggctgagcc agcatctgaa       600
     gcggctgtac gattatgcca gctcgtttct taggatctac tagcagcact atgggattga       660
     catgtctttc ccaagacaaa aatccccctt tacctaacta agattaaaaa aaaaaa           716
//
ID   I-3_RPr     repbase;    DNA;    INV; 5869 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5869
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3461-3461 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           341..1753
FT                 /product="I-3_RPr_1p"
FT                 /translation="MVRGNKRGGDAVSSSVNKVHVHEIRTNNKNQPPSKSD
FT                 YIDKATKNRYRNSDKGPYVVNLEGNKGNLGKLHRMALGKWLFKTSSTYKDE
FT                 IVDISVTGQNRMKVTTRSPQAANDLLNLEILKEREIIAYIPNFRVQCTGVI
FT                 RDVDVELEDNEILAELISPSRPISIRRLTRKTYVNNKLLTEKLPVCFINFD
FT                 SQSLPQYVSLYGAKCKVNPYIPSIRQCKNCLRFRHSEEQCRSKMRCEHCTQ
FT                 NHNVRECPLAEATLPVCIHCNGEHRSTFRDCPVKIMQNNEIKNKILNKSSF
FT                 AMATKNKFDVLSVSEFPELPEVSPTTSSLRKPPKIANKTRHVNNEMLSKQF
FT                 RDAMRSKXLNDDSPIVSRISGEEIKQSASKMHRITMQGTQSVLTYRPSIGN
FT                 TQDSGVEYIVHLIQKINNVHDNNNEIIQVITSNLEEILAKYINNCNIITKA
FT                 PQLIQAKISTHEHELQRSDNTAQDNP"
FT   CDS           join(1807..1998,1959..2786,2740..5712)
FT                 /product="I-3_RPr_2p"
FT                 /translation="MTDNFSISGYEHWESRQIHKAKSNKWTTLLETWKQPT
FT                 MFGSDRNMLIIPAEEGGKQTKTKTKKCGGGETNKNKNKKMLKILQLNIRSL
FT                 AANRNYLESFLRLNKIDLALLSETWLKKSQLFTISGYTIVRADRNDGYGGA
FT                 GIVIKNNIQYQIISFPSKFNNNAMQVCGIVCKVMNLEMSILSIYCAPGHKL
FT                 NTDYWTSLIRTIKPPLLMCGDLNSYHTSFGCSYDNFEGRNLIDAIDIENLC
FT                 ILNDGTPTLIRRHDRRPSAVDLSVGTPSLIPRMEWRVVDEPFGSDHVGILM
FT                 SIDKQVQPDHHPPHNNRKWNLKSAQWDKYTLLIGPAALSDAYLSRSLPSDQ
FT                 LLSQMPTSQDPCLNYDHFVACINGAAEICISKFKPYLGRKPKHPPKPWWDE
FT                 ECDKARKNNIDAFKQYKLSPSLSNFISCKRASTLCRKIYREKRRMKWAEFC
FT                 NSFNRSTPVKRIWSGVRALRHGYVGRKISSDNWVPEFLNSLSPEIVPNQDQ
FT                 IPDTSSXSHKLNEPFSYNELILALKTNSNTSPGEDNIHYPMLTNLSANGKK
FT                 ALLRVLNDVWVQEKRIDXWSNQIVVPLLKPNKDPSLHDSYRPIALSSCIGK
FT                 TFERLIKARLEWWVEANRKVPQYQNGFRKKRCTLDALAGFVSDIHGCFSDN
FT                 KYMMVANIDLKNAYNXVXISVLINKMVNMGIPSRIIRHTHNLLSFRSIKIR
FT                 YNGKTYGPRVTHLGLPQGAVLSPLLFNIYTADLKAAVGTDVSVSQYADDII
FT                 LYSQELTLDESLRKLSCAMLLFSRWCSDMGLTLSENKSSVTVFTRHRKYSI
FT                 PSSISLGGYQLRVEPIMRTLGMAIDNKLLWRRQIEQLVKGCEQSLNILRCI
FT                 NRLNYGADIKTSLMLYRQLILSRIDYGCFLYGDAAKNHLVKIERIQYKALR
FT                 SCLGALKSTPTNALLVEARDFPLNIRRKMLASRFIVDRLRIKNHPVTRRIS
FT                 HIATRVFTERYWFERKSPILVEVFCDLSHFSVPLNHLEILPRYHFDYPTLI
FT                 QNYSSHISVNFYQYDPDLPNAVNNSYLLSKLENKFPHFNYFYTDGSKSSDG
FT                 VGCAIYDSQLDSCSQYKLNNLASVFTAELVAINKSLAYLLSSTVQHAIILS
FT                 DSKGVLQKLQNPGRDPSFLIIDSLNLLNQLIRNGKSVYLIWVRGHYGLAGN
FT                 EKADAAAKXATRLREPTINSLSPSDIKSYYKRISYKKWEESYSISKNLKGK
FT                 FYSSIQPSIPVKPWFNQFTEGRGFYSTICRLRFNHNYSPHHLARIGIHINS
FT                 TCPCDSESIADANHIILACDKYTNGRDQLWKAVLKTDCPLPADLHTILTHH
FT                 TDNIYRELYNYIRTNKITI"
XX
SQ   Sequence 5869 BP; 1959 A; 1217 C; 1125 G; 1560 T; 8 other;
     catatgttat ttaactttca aatagtaaat attagaaaaa gtgtttgtgc tattacgctg        60
     tgtgctatta gtaatttctc agttaaaaat agtagttcgt ttgattttct tgttctacag       120
     ttaccttata gttaatttat taaaaaagtt ttggtgaaaa tgtctgtgag tagcggtggc       180
     cccgggccac cgtttactac taataattca aataacttag acattgataa tggaagtgtc       240
     ggtaacaata ctacaagacg gacatgtgag aatggaagta agaatatgga agtagacagg       300
     cctcacacct tacccaacca ctacagcacc taatgaagct atggtacgag gcaataaaag       360
     agggggggat gctgtatcga gtagcgtaaa taaggttcat gtccatgaaa tcagaactaa       420
     taataaaaat caacctccta gcaaatcaga ttacattgat aaggccacga aaaatcggta       480
     tcgcaattct gacaaaggtc catacgtagt aaatttggaa ggaaataaag gcaatttggg       540
     taagttacat aggatggctc tgggtaagtg gctgtttaag acatctagta catataaaga       600
     tgaaatagtt gatatttcag taacgggtca aaatagaatg aaagtgacca cacgttcacc       660
     acaggctgcc aatgatttat taaatcttga aattctcaag gaaagagaaa taattgcata       720
     cattcccaat ttcagagttc aatgtactgg cgtaatcagg gatgtcgatg ttgagttaga       780
     ggacaatgaa attctggccg aactaatatc tccgtccagg cccattagca ttagacggct       840
     tactcgcaaa acttacgtaa acaacaaact gctgactgaa aaattaccgg tatgtttcat       900
     taactttgac agtcaaagtc taccacagta tgtttcactg tatggagcaa aatgtaaagt       960
     aaacccttac attccttcca ttaggcagtg caaaaattgt ttacgtttca gacactctga      1020
     agaacagtgt agaagcaaaa tgagatgcga gcattgcacg caaaatcata atgtcaggga      1080
     atgtccccta gccgaggcga cattgccagt gtgtattcac tgtaacggtg aacacaggtc      1140
     tacgttccgg gactgtcccg ttaaaataat gcaaaataat gaaattaaaa ataaaatact      1200
     aaataaaagt tcctttgcca tggcaactaa aaataaattt gatgtactga gtgtgagtga      1260
     atttccagaa ttacctgaag ttagtccgac aacttcatcg ctaagaaaac ctccaaaaat      1320
     agcgaataaa actagacacg ttaataatga aatgttgtca aaacagtttc gtgatgcaat      1380
     gaggtcaaaa mccttgaatg atgacagccc aatagtttcc cgtatcagtg gcgaagaaat      1440
     aaaacagtca gctagtaaga tgcacagaat aactatgcaa gggacacaga gtgttctgac      1500
     atacagacca tcaataggaa acactcaaga cagtggtgta gagtatatag tacacttaat      1560
     tcaaaagata aataatgtgc atgacaacaa caacgaaata attcaggtca ttacgtctaa      1620
     cttagaagaa attcttgcta aatatattaa taattgtaat attattacaa aagctcctca      1680
     attaattcaa gctaaaatct caactcacga gcatgaattg caaaggtcag ataataccgc      1740
     acaagacaat ccgtaacgtt aagaccaacg tcaaccgatc aaaatacccc tgaaacttgg      1800
     ttaaagatga cggacaattt cagcatctct ggatacgaac attgggagag ccgacagata      1860
     cacaaagcta aatccaataa gtggacaaca cttcttgaaa cgtggaagca accaaccatg      1920
     tttggtagtg acaggaatat gctcatcatt ccagctgagg agggggggaa acaaacaaaa      1980
     acaaaaacaa aaaaatgtta aaaattttac agctaaatat tagatctctc gctgctaata      2040
     ggaattatct ggaatcattt cttagactga acaaaattga cttggcgtta ctttctgaaa      2100
     cttggcttaa aaaatcacaa ttatttacta tttctggtta cactattgta agagcggaca      2160
     gaaatgatgg ctatggaggc gcgggcattg tgataaaaaa taacatacag tatcaaataa      2220
     ttagcttccc ttcaaaattt aataacaatg cgatgcaagt ttgtggtatt gtgtgcaaag      2280
     taatgaattt agagatgagt atcctatcaa tttattgtgc acctggccat aaattaaata      2340
     ctgactactg gacatcccta atcaggacaa ttaaacctcc tttgttgatg tgtggggatt      2400
     tgaactcata tcacactagc ttcggatgct cttacgataa ttttgagggt cgaaacctaa      2460
     tagatgccat agacattgag aatctctgta ttctaaatga tgggactccc actcttatac      2520
     ggagacatga cagacgtcct tccgcagttg atctatccgt tggtactcca tctctcatac      2580
     ctaggatgga atggagggtc gtggatgagc cgttcgggtc ggaccatgtg ggcatcctca      2640
     tgtcaataga taaacaagtt cagcctgacc atcatcctcc tcataataat agaaaatgga      2700
     acctgaaatc tgctcagtgg gacaagtaca ctctcttaat cggaccagct gctctctcag      2760
     atgcctacct ctcaagatcc ttgccttaat tatgatcact ttgtggcgtg tattaatggt      2820
     gcggccgaaa tctgtatctc caagttcaaa ccctacctag ggcgcaaacc taaacatcct      2880
     cccaaacctt ggtgggatga ggaatgcgat aaagccagga aaaacaatat agatgcattc      2940
     aagcagtata aattgtctcc cagtctgtca aatttcataa gctgcaaacg agcctctact      3000
     ttatgtagga aaatatatag agaaaaaagg agaatgaaat gggcggagtt ttgcaactcc      3060
     ttcaatagaa gtacaccagt caagaggatc tggagtgggg tgagagctct caggcatgga      3120
     tatgtcggtc gcaaaatctc ttcagacaac tgggttcctg aattcttgaa ctccctctcc      3180
     cctgaaatag taccaaatca agatcagatt cctgatacat cctcggkctc ccacaaactt      3240
     aatgaaccat tttcctacaa tgaactcatc cttgccctta aaacaaattc aaatacctcc      3300
     cctggtgagg acaacatcca ctacccaatg ctgactaatc tgtcagccaa tggcaaaaaa      3360
     gctctgctga gagtgctaaa tgatgtttgg gttcaggaga aacgcataga tgsctggagc      3420
     aatcaaatag ttgtgccgtt attaaaaccc aacaaagatc cttccctaca cgactcctat      3480
     cgtcccattg ctttatcctc ctgcataggt aaaacctttg aacgcctcat taaagccaga      3540
     ttagagtggt gggtagaggc aaacagaaaa gtcccacaat atcagaatgg cttcaggaag      3600
     aagcgctgca ctcttgatgc cttagctggc tttgtgtctg acatacacgg ctgtttctct      3660
     gacaacaagt atatgatggt agcgaatatc gacttaaaaa acgcctataa twmtgtcwgt      3720
     atctccgtgc tcataaataa aatggttaat atgggcatac catctagaat tatcagacac      3780
     actcataacc tcctctcctt ccgctccatt aaaatccggt ataacggcaa aacatatggt      3840
     cctcgtgtaa cgcacttggg attgccgcaa ggggcggtgc tcagtccctt gctctttaac      3900
     atctatacgg ccgatcttaa ggctgccgtg ggcacggatg tttctgtatc tcagtatgct      3960
     gatgacataa tcctgtacag tcaagagcta acgctagacg aaagtttgag aaaactaagc      4020
     tgtgcaatgt tgttgttcag ccggtggtgc tcagacatgg gtctcactct gtctgagaat      4080
     aaaagtagcg tgactgtgtt cactaggcac agaaaatact ctattccatc ctcgatatcg      4140
     ctaggtggat atcaactacg agttgagccc atcatgagga cgctaggtat ggcaatagat      4200
     aacaaattgt tatggagacg gcaaattgaa cagttggtta agggatgtga acagtcgcta      4260
     aacatactga gatgcatcaa ccgtctgaac tacggagccg atatcaaaac atcgctaatg      4320
     ctctacagac aattaattct ttckagaata gactatggtt gtttcctcta cggggatgct      4380
     gcaaagaatc acttggtgaa aatagaaaga attcagtaca aagcgctgag gtcctgcttg      4440
     ggggctctca aatccactcc taccaacgcc cttttagtag aggcccgtga cttccctcta      4500
     aatataagaa ggaagatgtt agcttcccgc ttcattgtag acagactgag aatcaaaaat      4560
     catccagtaa ctcgcagaat cagtcacata gctactcgag tcttcacaga aagatactgg      4620
     tttgaaagga aaagtccaat actagtagaa gttttctgtg acttgtcgca cttctcagtc      4680
     cccttaaatc accttgaaat ccttcctagg tatcattttg actaccctac actgattcaa      4740
     aactatagtt cgcatatctc cgtcaacttc taccaatacg accctgatct tcccaatgca      4800
     gtaaataatt cttacctcct gtccaaactc gagaacaaat tccctcactt taattatttc      4860
     tataccgatg gctctaaaag tagtgacgga gttggatgtg caatttatga ttcccagtta      4920
     gattcctgtt ctcaatataa actcaataat ttagcctcag tttttactgc agaattagta      4980
     gccatcaata aatccttagc ttatttactg tcatcgacgg tccagcacgc cattattttg      5040
     agtgatagca aaggtgtgct ccaaaaatta caaaacccag gcagagaccc ctctttcctg      5100
     attatagatt ccttaaactt gctgaaccaa ctgattagga atggtaagtc agtatatctg      5160
     atatgggtga gaggccatta cgggctggcc ggcaatgaga aggctgacgc tgcggcgaaa      5220
     gmagccactc gattgcggga gcctaccatt aactcactat ctccctcaga cataaaaagc      5280
     tattacaaga gaataagtta taaaaaatgg gaagaaagtt actccatatc aaaaaatctg      5340
     aagggtaaat tctattcatc cattcaacct tccattccgg tcaaaccgtg gttcaatcaa      5400
     ttcacagaag gtagaggatt ctacagcacc atctgcaggc taagatttaa tcataattat      5460
     tcaccacacc atttggcgcg tatcggaatt cacataaact ctacatgtcc ttgtgattcc      5520
     gagtcaatag ctgatgccaa tcatataatc ttagcctgtg acaaatatac caacggcagg      5580
     gatcagctgt ggaaggcagt actgaagaca gactgccctc taccagccga tttacacact      5640
     atactgacgc accatacaga caacatctac cgagaactat acaactacat ccgaacaaac      5700
     aaaataacaa tataaaagaa ataaattata tcccctcgta acatctttca aggtgtacgt      5760
     ttcaacacat actaaatccg actgttcaac tttaaattaa tcgcaagtac acgttaccaa      5820
     tggctaattt gcgttgtaca ataaggccaa aaaaaaaaaa aaaaaaaaa                  5869
//
ID   I-44_AAe    repbase;    DNA;    INV; 7084 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-44_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7084
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1317-1317 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1905
FT                 /product="I-44_AAe_1p"
FT                 /translation="MSPNGLHLRPGDPGGPGGGGSGITNQRNGEYTGALVP
FT                 SFMDPEGTLGQLHYLKLSGTSGQILTDPFLLRLSVEKHIGGPIAGAFKENR
FT                 GLTYVLKVRSQEQVKQLLRMKQLSDGTGITIEEHSSLNQVRCVVTNPDTVG
FT                 LSDQYLVENLANQNVKEVRRIKRRNEKGEPVNSPVMILTINGTVIPEHIDF
FT                 GWTRCRTRNYYPSPMLCFRCWTFGHTGKRCSATQRTCGKCSKTHDEELTPN
FT                 IAEGATAFEVSRGRTNCDEPAHCKNCEEWNKKREKNEKVDTKHAVSSRECP
FT                 IYKKENAIQHLRVDLGISYPAARRDYETREAAMAKKKNPQTDKSFAGIVNA
FT                 SKDCEMDEMRSMVKNLLEDSKRKDERIAQLERALEKRSVNTRLDSAKDHGP
FT                 TAELVRQVAELTATVRQLQDNLTKKDAFIKTLLTTRSHPVASPSNSTISAA
FT                 ETEKANMTHSHSSTEEIIVDNVTLQPFFQVQEWIKNSTHIANDQSDYGRES
FT                 TPKEQQTQENAETMECSIEVDNISSDGDASVAPGFRR"
FT   CDS           2060..6805
FT                 /product="I-44_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="TSRPLSPPTYDSQHQWTFTYTTTFTENNQPENCSNES
FT                 TEHNFHYETPQNRFTNNPSTNSTTAGASGSRGPVSAEATPQPVLTDNPQHP
FT                 SVSAADGTHKGVKTYTPQYPEDGRDTQGPDKPEAISVPEPTDYPCHPHRSG
FT                 RGTHKGVKTRPPKDIEGNGIGKLTSSTTCMLSTSLTSSCPTSSCSTSTSTT
FT                 SSDSTNSINSKITATEKETTTISRGRGSVADSLPPELSHIPQHPCTLRRNP
FT                 PRTRNKPVRYQAGITPTKPDNPFPPCLTEREATNADHYDRMIRKRDQQSLP
FT                 TDGPSHRSSITDHMSSPPDPEPGLPGHPGSSNPGGKSHPKHGQDPEQGPPG
FT                 HPERPRPGGKPHLRSTTSTSKRPINQGPTTLAVQWNMNGFHHNLPDLEVLV
FT                 HDFQPVALAIQEIHRTTPATMNNTLGKRYRWFTKTGANIYQSVAVGVSTDI
FT                 TTEEIDLDTDLPIVAVRLPWPFPVSVISVYLPNGKLPDLRNQLEAILLKIP
FT                 SPMVILGDVNGHHRAWGSRTDNARGKCVVDIACSNNLAILNDGTPTFIRGQ
FT                 TETAIDVSLVSTSITSRLLWSVDTDTRGSDHYPITLRLDKSISPQTSRRPR
FT                 WIYDRADWAQFQYDIDSGIEQTPPTSITDLTALVTGSAEKSIPKTSPNSGR
FT                 RALHWWSPETKTATKTRRKALRAFKRSKKNLPAEHPDLVTAKKCYQAARNE
FT                 CRQIIREAKEKSWTDFLDTINEDQSSSELWRKINSIQGKRRVKGFSLKIDG
FT                 VTTRDPQTIADALAEYFHGISAIDKYTPTFLKHYPNPQLSVINFPTPPDQG
FT                 QLFNQPFSMTELNYAMGRVKGKSAGSDELGYPMLKHLSYSGKSKLLELINQ
FT                 EWTEGTLPEEWKHSLVVPIPKSSGPANSTTSYRPIALTSCACKIAERMANR
FT                 RLMEHLESNGLLGYRQHAFRPGYGTGTYLTNLGSILEDAMKAQEHVEIVSL
FT                 DLAKAYNRAWAPSILKQLVEWGVSGNLLNFVKNFLTNRTFEVLIGNHRSKV
FT                 TREETGVPQGSVISVTLFLVAMSGLFLVLPKGVYILVYADDILLLVTGKHP
FT                 RSIRRKMQAAVNAVTKWAGNTGFDIAPEKSSRLHICNSNHRPPKTPITANG
FT                 KTVALKKTLKVLGVTLDRKLSFHSHFLAVKESCTNRVNLIRSISSKRTRSD
FT                 RATRHRVADAVICSRLFYGIEITSRAQDNLVKTLAPTYNNTIRAISGLLPS
FT                 TPADSACAEAGVLPFRYKAALTLGNRTVCYLERTKEDGQTCILEENANSAL
FT                 NAVANIQLPPVAGLHRIRPRSWSAKRPQIAQNIKTHFRRQCNPTEVQTAFR
FT                 EVLHRKFNWHEVRYTDGSKLAERVGLGIHSRTTEIYHSLPGQCSVFSAEAA
FT                 AILVAITTPCDYPVLVVSDSDSALSAIANPNNRHPYIQKIQAALDSPSTRA
FT                 TFMWVPGHCGISGNERADTLAGIGRNSPLLSRKIPRDDVKSWLKERLWTAW
FT                 SVEWHRNRGLFLRKIKNTTTTWQDQPARREQVVLSRLRTGHTRLTHDMGST
FT                 GGSFHRQCETCRTQNTVEHFLINCPTLEHLRIIHEITGIDSTLQNDAVKER
FT                 QLIIFLKEAGLFTLI"
XX
SQ   Sequence 7084 BP; 2010 A; 2107 C; 1617 G; 1350 T; 0 other;
     caatttagtg caaaaactgc agtggaagag ctaaacccgc gtgtgatctc acggtaatca        60
     cccattgttc ccgcattgtg ttgttggcgc aggcatagtg gtattcattg aagcccacga       120
     ctgtgtgtgg ctacataacc cgagtgtgtg aaaatatcaa acagtgaaca aactcctttt       180
     ttggcactct atcgaaaagt ttcgtcatcg cagtgtgtac tcccgactaa catatctacc       240
     ctgtgaatct ccaagccggt cgactgggag atccttagat catcttagtt ccggcccggc       300
     ggcgtcatgt cgccgaatgg cctccacctc cgcccagggg acccaggggg ccccggtggt       360
     ggcggcagcg gaatcacgaa tcaaagaaac ggagagtata caggggcatt agtaccctcc       420
     tttatggacc ccgaaggtac tttagggcaa cttcactacc tgaagctgtc cggaacctcc       480
     ggccaaattc tgaccgaccc cttcctcctc cgtctgtcag tcgaaaagca catcggtggc       540
     cctatcgccg gtgcgtttaa ggagaaccgc ggcctaacgt acgtactgaa agtacgtagt       600
     caggaacaag tgaaacaact gctacggatg aagcaactta gtgatggtac tggtatcact       660
     attgaggagc actcgtcact caatcaagtc cgatgtgtcg tcactaatcc cgacaccgtg       720
     ggtcttagcg atcaatattt ggtcgaaaac ctggcgaacc aaaacgtcaa agaggtgcga       780
     cgcataaagc gccgcaatga gaagggcgaa ccagtcaact ccccggtcat gattttgaca       840
     atcaacggca cggttatccc ggaacatatt gattttgggt ggaccagatg ccgaaccagg       900
     aactactatc cctccccgat gctgtgtttc cgctgttgga cttttggtca caccggcaag       960
     cggtgctcag ctactcagcg gacctgcggc aagtgcagca agactcacga tgaagaactc      1020
     acccccaaca tcgctgaagg agcaacagca ttcgaggtat ccagaggaag gacaaactgc      1080
     gacgaaccgg cccattgtaa gaactgtgag gaatggaaca aaaaacgcga gaagaacgaa      1140
     aaggtcgaca cgaaacacgc agtctccagt cgtgaatgcc cgatctacaa gaaagagaat      1200
     gccatccaac atctacgggt cgaccttggt atttcgtacc cggcagcccg ccgggattac      1260
     gaaaccagag aagcggccat ggccaaaaag aaaaatccgc aaacagacaa atcctttgca      1320
     ggcattgtca acgctagcaa ggattgcgag atggatgaaa tgaggtcgat ggtaaaaaat      1380
     cttttggaag actccaaaag gaaggacgag cgcatcgccc aacttgaacg cgcgctagaa      1440
     aaacgcagcg tcaacacccg gctagatagc gcaaaagatc acggtcccac ggcggaacta      1500
     gtacggcagg tggctgagct aacagccaca gtcagacaac tgcaggacaa tctgacgaag      1560
     aaagacgcct tcatcaaaac actccttacc acgagaagcc accctgtagc atccccaagt      1620
     aactccacca tctcggccgc cgaaactgaa aaagccaaca tgacgcactc ccattcctca      1680
     accgaggaga taattgttga caacgtaacc ttgcaaccgt tcttccaggt ccaggagtgg      1740
     atcaaaaaca gtacccacat cgctaacgac caatccgact atggtcggga atccaccccg      1800
     aaggagcaac aaacacagga gaacgccgaa accatggagt gcagtatcga agtagacaac      1860
     atcagcagcg acggcgatgc tagcgtcgct ccgggcttcc gccgctaaca ccatcaactc      1920
     caacgccaca tccacctcta acccatctaa acggggccac cacagtcccg atggcagtga      1980
     ctcctctatg aagggaccca gcagctccaa acggaaacac cgtaagagcc acgggatacc      2040
     cccttccccc acaatctaga caagtcgccc gctcagtcct cccacctacg actcccagca      2100
     tcagtggacc tttacctata caacaacatt cactgaaaac aaccaacccg agaattgctc      2160
     aaatgagtcg actgagcaca acttccacta cgagacacca caaaatcgat tcacgaacaa      2220
     cccctcaacc aactccacaa cagcgggagc ctcgggcagt cggggccccg tcagtgcgga      2280
     agctacaccc caaccggtac tgacggacaa tcctcaacac ccgagtgtct ctgcagctga      2340
     cgggacgcac aagggtgtaa aaacctatac cccgcaatac ccagaggacg gccgggacac      2400
     acaaggcccc gacaaaccgg aagccatttc tgtaccggaa ccgacggact acccttgtca      2460
     tccccaccgg tctggaagag ggacgcacaa gggtgtaaaa acccgtcccc ctaaggatat      2520
     tgaaggaaat ggaatcggta agctgacgtc gagtacaact tgcatgctgt ctacgagttt      2580
     aacttcttcg tgtccaacat cttcgtgttc aacttcaacg agtacaacct cgtcggattc      2640
     aaccaactcc atcaatagca agataacagc cactgaaaaa gaaaccacta cgatcagccg      2700
     gggccgcggt agtgtggctg attcacttcc accggaactg tcccacatac cacaacatcc      2760
     atgtacgctt cgtagaaacc cccccagaac tcgaaacaaa ccggtaagat accaggccgg      2820
     tataactcca acgaaacctg ataatccctt tcctccctgt ctcacggagc gggaagccac      2880
     gaacgcggat cactacgacc gaatgatcag aaaacgcgat caacaatcac tgccaactga      2940
     tggcccatcc catcggtcgt cgataacaga ccatatgagt tcacctcccg accccgaacc      3000
     gggtctgcct gggcaccctg gatcgtccaa tccaggtggt aagtcccacc caaaacacgg      3060
     ccaagacccc gaacagggtc ctcctgggca ccccgaacga cctcgtccgg gtggtaagcc      3120
     ccatctgcgt tcaacaacct ccacctccaa gcgccctatc aatcaaggcc ctaccaccct      3180
     cgctgtccag tggaacatga acggtttcca ccacaacctg cccgatttgg aagttctggt      3240
     ccatgatttt caaccggttg ccctggccat ccaggaaata caccgcacca ccccggcgac      3300
     aatgaacaac accttaggta agagatatag gtggttcact aaaaccggcg ctaacatata      3360
     ccagtcggta gcagtgggcg tgtctacgga cattacgact gaagagattg atctcgatac      3420
     cgacctccca attgtcgcgg tccggctccc gtggcccttt cccgtttcgg ttatctccgt      3480
     ctacctcccg aatggaaagc ttccggatct aaggaaccaa ctggaagcaa tcctactcaa      3540
     gatccccagc cccatggtga tacttggtga cgtcaatggg caccaccgag catggggcag      3600
     tcgaaccgat aatgctaggg gaaaatgtgt cgtcgacatc gcatgcagca acaacttggc      3660
     gattctgaat gatggaaccc ctacattcat ccgcggacag acagagacgg ccatagacgt      3720
     ttctcttgtc tctacctcca tcactagtcg cctcctttgg tctgtggaca cggatacccg      3780
     aggaagtgat cactacccga ttacgcttag actcgacaaa tcaatcagcc cgcaaacctc      3840
     acggcgacct cgctggatct atgaccgggc cgactgggcc cagttccaat atgacatcga      3900
     ctctggtatt gaacaaaccc ccccaacttc aatcacggac ctaactgcct tagtcactgg      3960
     atcggcagaa aagtccatac cgaagactag cccaaactcg ggtagaaggg ctctccactg      4020
     gtggtctccc gaaacgaaga cggctacgaa aactcgcaga aaagccctgc gcgccttcaa      4080
     aaggtctaag aagaacctgc ccgctgagca ccccgacctt gtgacagcca aaaaatgcta      4140
     ccaagccgcc cggaacgaat gccggcaaat catcagggaa gccaaggaga aatcctggac      4200
     cgacttcctc gacacaataa atgaggacca gtcatcttcg gagctatgga ggaaaatcaa      4260
     cagcattcag ggcaaacgcc gagtgaaagg tttttccctc aagatcgacg gagtaaccac      4320
     ccgggaccca cagacgatcg cggatgccct cgcggaatac tttcatggga tatccgccat      4380
     cgataaatac acgccaacat ttttaaagca ttatcccaac ccacaattaa gtgtgataaa      4440
     tttcccgact ccccctgacc aagggcaact tttcaaccaa cccttctcca tgacagagct      4500
     caattacgcc atgggcaggg tcaagggcaa gtcagcagga tcagacgaac taggttaccc      4560
     aatgctaaaa caccttagtt acagtggaaa aagcaagctg ttagaattaa taaatcagga      4620
     atggactgag ggcacgctac cagaagagtg gaagcacagc cttgtagtcc ccatacccaa      4680
     gagttccgga ccggctaaca gtaccaccag ctaccgcccg atagcactca ccagctgtgc      4740
     atgcaaaatt gcagaacgga tggcaaatcg tcggctgatg gagcatcttg agtccaatgg      4800
     cctactaggg taccgccaac atgcatttcg cccagggtat ggtaccggga cttacctaac      4860
     taatctcgga agtatcctag aagacgcaat gaaggcgcag gaacacgtgg aaatcgtatc      4920
     cctcgacctt gccaaggcat acaaccgagc ctgggcccct agcatcctta agcaactagt      4980
     agaatgggga gtatccggaa acctattgaa tttcgtaaag aatttcctca caaaccgaac      5040
     cttcgaggtc ctgataggaa atcaccgatc gaaagtcacg agggaggaga ccggagtgcc      5100
     tcaaggctct gtgatttcgg ttacactctt cctcgtagcc atgagtgggc tctttctggt      5160
     gctaccgaaa ggagtatata tattggtata cgcggacgac atcttgctcc tggtcacagg      5220
     aaaacatccc cgttcaatcc gccggaagat gcaagcggca gtgaatgccg tcaccaaatg      5280
     ggctggcaac acgggctttg acatcgcgcc cgaaaagagc tcaagacttc acatctgcaa      5340
     ctcaaatcac cgcccaccaa aaacacctat aacggccaac ggaaagacgg tcgccttgaa      5400
     gaaaacactt aaagtgctgg gagtgacgct tgatcgaaaa ctttctttcc acagtcactt      5460
     tctcgcggtc aaggagagtt gtacaaaccg tgtcaacttg atccgtagca tatcatccaa      5520
     acggacgcgc agcgaccgcg ccacgcgaca ccgggtggcc gacgccgtaa tttgtagtcg      5580
     cctcttctac ggaatcgaga ttaccagccg cgcacaggac aatctagtga aaacactggc      5640
     gccaacctac aacaacacca tccgtgcgat ctctggacta ctaccttcca ctcctgctga      5700
     ctcagcttgc gcagaagccg gtgtgttacc tttccggtat aaagccgctt tgaccctcgg      5760
     aaaccgcacc gtctgctatc tggaaaggac caaggaagat gggcagactt gcatcctcga      5820
     agagaatgcg aactctgctc ttaacgctgt ggccaacatc cagcttcctc cggtggccgg      5880
     gctccaccga atcagaccca gaagctggtc ggccaagaga ccccagatag cccaaaacat      5940
     taagacccat ttccggagac agtgcaaccc cacggaagta cagactgctt tcagagaggt      6000
     actacacaga aaattcaatt ggcacgaggt ccgatacacc gacggctcca aactagcgga      6060
     gcgggtcggt ctcggcattc atagtcgcac tacagaaatc tatcacagcc tccctggtca      6120
     gtgctccgtt ttctcggctg aagctgcggc catacttgta gccatcacga cgccctgcga      6180
     ctatccggtg ctggtcgtca gcgactccga cagtgccctg tctgcaattg ctaacccgaa      6240
     caatcgacac ccttacatac agaaaatcca ggcagccttg gatagcccat ccactagagc      6300
     cacattcatg tgggtccccg gtcactgcgg catctccggc aatgagcgag ctgacacact      6360
     cgctggcatc ggccgtaaca gcccattact atccagaaag atcccccgtg atgacgtaaa      6420
     atcctggttg aaggagcgac tttggaccgc ctggtccgta gaatggcacc ggaacagagg      6480
     gttattcctt cgcaaaatta aaaacaccac gacaacatgg caagaccaac ctgctcgccg      6540
     ggagcaggtc gtcctctctc ggctgcgtac gggacataca cggctgacac acgacatggg      6600
     tagcacaggg ggcagtttcc accgccagtg cgagacatgc aggacacaaa atactgtcga      6660
     acattttctg ataaactgtc ctaccctgga gcacctaaga ataatccacg agatcaccgg      6720
     tatcgacagc accctccaaa atgacgcggt aaaggaacga cagctgataa tctttttgaa      6780
     agaggctgga ctctttacct taatatgacc cctgctaaga ccctggacct gaaaacgaat      6840
     acgaaatcac cacatcccct accgttacga tccctgctat gaccttgaac tcgatacgga      6900
     acttccacat cattcgacaa caccagtgaa acaaagaaca ccgcaacata cactgttaat      6960
     tatacaatgt aactccctct cctcctccat ccctgcaaat taaccccccc ccccctttta      7020
     tatacgggga tgaaccagcc tcgggctgaa tttcccctta ataaagagtc aatcaatcaa      7080
     tcaa                                                                   7084
//
ID   I-45_AAe    repbase;    DNA;    INV; 6935 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-45_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6935
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1318-1318 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
CC   Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           440..1831
FT                 /product="I-45_AAe_1p"
FT                 /translation="MSLSGGYPPLPGDPGGGTASYIDGTYTGATLPSYMDP
FT                 QGNCGELIVLRMEPVNGKMPEHPFTLRQSIEKRVNGRIEGAIPEAQGRSYA
FT                 LKVRSRHHIERLLTMTQLTDGTAVKVSYHPGLNSTRCVISCRDLMKVKDDN
FT                 EILDCLKDQNIIGIRRITRKVGEDRELTPTVILTVSGTTLPEHIDIGYQRI
FT                 RTRPYYPAPMLCYQCYQFGHTRQKCQKQIPTCGNCNQEHELTQGVRCQNPA
FT                 YCARCKSSDHSLGSRKCPVYQNEDAIQHIRVDRGLSYPEARRAFEASTGQR
FT                 SFAGIAVHSKDKTISDLSAKLEALSVQMVEKDSKIKXLEDQISSRNVPNSS
FT                 NEFQRLEKLIINLQNQIQKKDERILNLEKALEKDSRLDLVRKHGTIEDLVA
FT                 KVSLLQETVTKKDNEIRILRAHTKTTSLDSSNSKLQRQQPTKTQVPPPHFP
FT                 ALKGTTTRKIEQARQHQSP"
FT   CDS           2165..6577
FT                 /product="I-45_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MSYKPKIISCRDKNNMHQTEDDTPNKLLNKLSFPANI
FT                 AAQTALPNVQTLGLETSGSRDNFTLPLLDSEGLINTSSKQDKASGSRGPTS
FT                 AEDFGEPELVDNLRHPLANSLEINCVGTIGTPFVENNGSRDNIILPHPDFD
FT                 RTKKTSQQDKVSDSRGPTSAEDFAGPEPVDNLRRSLANSFGTVSEGVKALH
FT                 CKENNGSHDNIILPQDDEQTNKENASSSRSTTSVRASCESDRLDNPRRLLA
FT                 PRQETVPPAQLQFDNPIPPEARSDAQKYDQWKYRTDNAAIPAAGPSSLLTF
FT                 IPVSSISSPLERPTLAVSACEDPLRSASSLKSSCKPVGLARRRSTRTRTPP
FT                 SHPDNASSKKTKHSSLAIQWNMNGYSNNLADLELLIAESTPVIIALQEIHR
FT                 SDTKTMEKTLQGQYNWILKGGANIYQSAAIGIHRSTTYVDITPNSDLIAVA
FT                 ARVESPFPITVVSIYIPTLDCKNIEQRLSNFLDQLLPPFLILGDFNAHHVS
FT                 WGSRRNTEKGFQILRASEKANLRILNDGSPTFTRPLISSAIDISFASENLL
FT                 GRLQWSISKDPMGSDHHPISIYCNFPTPKTTRRPRWKYELADWQLFQNTIE
FT                 ISPIEDDTPLEGLISTILTAASEAIPKTSPNAGRRALRWWSPETKTAIKLR
FT                 RKALRKMKRIPKDHPNAEKIAADYCSKRNACRDIVRAAKRKSWDEFLNGIS
FT                 SDSSSSELWKSINALQGKRGINGIAIKTSNGISRDPKEIANILGGFFAKLS
FT                 SRSGYNPDFTQLDDFSTTVESISIPRSRPGDRLDKPFSSAELSFALGNGKG
FT                 KSAGPDDIGYPLLRHLPPIGKRVLLKNYNRIWEDRTFPDQWRHSLVIPIPK
FT                 NDSNRTEPSGYRPISLTSCCGKVMERMVNRRLTQFIRDNDLLDHRQHAFRQ
FT                 GCGTNTYFATLGQVLDDALEKGLHVDLATLDLSKAYNRTWTPGVLRTLASW
FT                 GISGNTFAFIRNFLTNRTFQVCIGNTKSNSFPEETGVPQGSVLAVTLFLIA
FT                 MNGVFETLPKGVFIFVFADDIVILVAGHKPTLIRRKLQNAIKAVHDWALSI
FT                 GFDLSPSKSHFSHICSGRHRTKKNPPTIDGEEIPFDATIRVLGLYLDRHLS
FT                 FQPHCDRIKKQCESRLNLLRIITSKHTKNNRDVGLRVTKAIVCSRLLYGAE
FT                 LLCRNSENVISKLAPTYNRCIRSLSGLLPCTPATSTCVEAGIPPFRYIFAI
FT                 SVCSKAVSFLEKTSGDDEGVFLLKEANKLLQQFAHQILPPVSTVHWVGDEA
FT                 WDFSPPRIYWTLNTPTKQNLNPTTVIPRFNELIKRKLNGYELFYTDGSKTS
FT                 SEVGFGIFGPNINKCGGLPKSTSIFSAEATAILSAVTEYSFTWKAIVTDSA
FT                 SVLRALENPKNKHPLVQAIRTASNSNTIYVWVPSHCGIKGNEAADKLAAEG
FT                 RSKIPAHPEVPAADLKIWIKTVFTSTWENEWNLARDSFLRKIKGDRHKKLE
FT                 GPKNTF"
XX
SQ   Sequence 6935 BP; 2123 A; 1828 C; 1458 G; 1525 T; 1 other;
     acatcacatc gacacgttcg gtcgcttact atttcacggt cgagtttttt tcgcgtttct        60
     cttcaagtaa ttgcgctaat tacttccgaa aaatagtgaa aaatatccct tcgctgccag       120
     tgatttagtg gatagtgaag attttgataa cagctgtccc agtttagtgg aaaaagagat       180
     ttagttttac aattgctcaa acgaaaggac gccacacaac gtcgccatcg tgataaaata       240
     accccacatc agctttctca ctcgaacttg cacgcaagtt cgtttgcgcc gcttgcatct       300
     tctgctcgag ccagtcactc aaatcgacgg ttggttttcg cgtacgcagg ataagaaaat       360
     aattaactag cacttaaaaa gaaacatacg aaatactcga ttcattggtg ttccacataa       420
     tcaacacgcc ccaccagcga tgtcgctgag tggcggctat cctcccctcc ccggtgatcc       480
     tggaggaggg actgctagtt acatcgacgg aacgtacact ggagctacat tgcccagtta       540
     tatggaccca caaggaaact gcggtgagct gatagtgctg cgcatggaac cagtgaacgg       600
     caaaatgcca gaacatccgt tcacactacg tcaatcaatc gagaaaaggg taaacggaag       660
     gatcgaagga gcaattcctg aagctcaggg ccggtcatac gcactgaaag tcagaagtag       720
     gcaccacatc gaaaggcttc taacgatgac gcaactcacc gatggtaccg ctgtcaaagt       780
     ttcctaccac ccgggactca actcaacacg atgcgtgatc agctgccgcg atctaatgaa       840
     ggttaaggat gacaacgaga tccttgattg cctgaaggac caaaacatca taggtatccg       900
     tcgaataacc aggaaagtag gtgaagatag agaactcaca cccacggtga ttctcaccgt       960
     aagtggaact acacttcccg aacacatcga catcggttac cagcgtattc gaaccaggcc      1020
     ctactaccct gcaccaatgc tctgctacca gtgctaccaa tttggccaca ccaggcaaaa      1080
     atgccagaag caaatcccga cgtgtggaaa ctgcaaccag gaacatgaac tgacacaagg      1140
     tgttcgatgc caaaaccctg catactgcgc tcggtgtaag tctagcgacc attcgctcgg      1200
     cagccgtaaa tgtccagtct accaaaacga ggacgcaata cagcacatac gagtggatag      1260
     ggggttgtct tatcccgaag ccagaagagc ttttgaagca agcactggtc aacgttcttt      1320
     cgcaggcatt gcagttcata gcaaagataa aaccatctcg gacttgtcgg cgaagttgga      1380
     agctctctct gtacaaatgg ttgaaaagga tagcaaaata aagastctcg aagatcaaat      1440
     ctcctcaaga aatgttccca acagcagcaa cgaattccag cgtctcgaaa aactgattat      1500
     taacctgcaa aatcaaatac aaaagaagga tgagaggatc ctaaatctag agaaagcctt      1560
     agagaaggac tccaggttgg atctggtccg caagcatggg accattgagg accttgtcgc      1620
     taaagtctcg ctccttcaag agaccgtaac taaaaaggac aacgaaatta gaattctacg      1680
     cgcgcacacc aaaaccactt ctctcgacag cagcaactcc aaattacaac gacagcaacc      1740
     caccaaaact caagtccccc cccctcattt cccggctctc aagggcacaa caaccagaaa      1800
     gatagaacaa gcaaggcaac accagtcacc gtagcgcaga acctatcgat agtccccgcg      1860
     acgccgatgg atgtagtcgc ttctgggacc aacaccggaa caaaaccgaa attgaggaaa      1920
     aaaaatgcag aaaaaaacag cggcgatctc catgctaaac gaaccaaggc caacgaatca      1980
     gtaatgtaca tctccgatac agaagatttt ccagcacctg aaaacgatat ttgcaatgag      2040
     tcagaggtag aacaccacat ttcgtcgtct tcagacgaag caatggaaga gagcgtggca      2100
     tcaggaacat tttagcaagc tacgtcctac ctttttccac catccgtaat aacaaataac      2160
     tacaatgagt tataaaccaa aaattatttc atgtcgagat aaaaacaaca tgcatcaaac      2220
     agaggacgat acccccaaca aactcctgaa caaactttcc ttccccgcta acatagcggc      2280
     tcaaacagca ctcccgaacg tccaaacctt gggattggaa acttctgggt cgcgtgataa      2340
     cttcactctc ccccttctgg actccgaggg actcataaac acatcaagca aacaagataa      2400
     ggcctcgggt agtcggggcc ccaccagtgc ggaagacttt ggtgaaccgg aactggtgga      2460
     caacctccga catccgttgg caaactcttt ggaaataaac tgcgttggaa ccatcggtac      2520
     tccgtttgta gaaaacaacg ggtcgcgtga taacatcata ctcccccacc cggacttcga      2580
     cagaaccaaa aaaacaagcc agcaggataa ggtctcggac agccggggcc ccaccagtgc      2640
     ggaagacttt gctggaccgg aaccggtgga caacctccgg cgttcgttgg caaactcctt      2700
     tggaacggtc agcgagggag ttaaggcttt gcactgtaag gaaaacaacg ggtcgcatga      2760
     taacatcata ctcccccagg acgacgagca aactaataag gaaaatgcct caagtagtcg      2820
     tagcaccacc agcgtgagag cctcgtgtga atcggatcgt ttggacaatc cccggcgttt      2880
     gttggctccc agacaggaga cagttccgcc tgcacagtta caattcgata atcctatccc      2940
     tccggaagct cggtcggatg cgcaaaaata tgaccaatgg aagtacagaa ccgacaacgc      3000
     cgctattcca gctgctggcc cttcatcctt attgaccttc attcctgtga gctcaatatc      3060
     ctcaccgcta gaaagaccca ctttagctgt ttctgcctgt gaagatccat tgcgatctgc      3120
     ttccagtctt aagtcttcct gcaaacccgt aggactagca cgcagacgaa gtacgcgaac      3180
     aagaacccct ccctcacacc cagacaacgc gagtagcaag aagacgaagc attcatcgct      3240
     agcgatacag tggaatatga atggctattc gaacaacctt gctgatctag aactgctcat      3300
     agcagagtct acacccgtta taattgccct tcaggagatt catagatcag acaccaaaac      3360
     aatggaaaaa actctacaag gccaatacaa ctggatcctg aaaggtgggg caaacattta      3420
     tcagtctgca gcaattggaa tccatagatc aacaacctac gttgacatta ctcctaactc      3480
     agatctgatc gcagtagcag ctagagttga atctcccttt ccaataaccg ttgtcagtat      3540
     ttatatacca acattggatt gcaagaacat tgagcagagg ttgtccaatt ttctcgatca      3600
     gcttctcccg cctttcctga tcctgggcga ttttaacgcg catcatgtta gctggggttc      3660
     acgaaggaac actgaaaagg gcttccaaat tcttcgggcc tcggaaaaag caaaccttcg      3720
     tatactgaac gacggctctc ccactttcac gcgaccgctt atcagttccg ccatagatat      3780
     atctttcgct agcgaaaacc ttttaggacg ccttcagtgg tcaatttcca aggatcccat      3840
     gggtagtgac catcatccga tatcgatcta ctgcaacttc cccacaccaa aaacaaccag      3900
     acgtccacga tggaaatatg aattagctga ctggcaactt ttccaaaata ccattgaaat      3960
     cagccctata gaagatgata ctccactaga agggttgatt agcacaatcc ttacagcagc      4020
     ctccgaagcc attccgaaaa caagcccaaa cgctggccgt cgggcgctaa gatggtggtc      4080
     acctgaaacc aagaccgcta ttaaattgag gaggaaagcc ctaagaaaaa tgaaacggat      4140
     tccgaaagac caccctaacg cagaaaaaat agctgcggac tactgttcaa aacgcaacgc      4200
     atgccgggac atagttcgtg ctgcaaagcg caaatcatgg gacgaattcc tgaacggtat      4260
     aagcagtgac agctcatctt ccgaactgtg gaaaagcata aacgcgttgc aagggaaacg      4320
     cggcatcaac ggtattgcca ttaaaaccag caacggcatc tccagggacc ccaaagaaat      4380
     tgcgaacatt cttggtggtt tcttcgctaa attgagctct cggagcggtt ataaccctga      4440
     ttttactcag cttgacgatt tttcgactac cgttgaatcc atctcaatcc cgcgtagccg      4500
     cccaggtgat cgattagaca aacccttttc ttctgctgaa ttgtcctttg cattaggtaa      4560
     cggtaaagga aaatcagctg ggccagatga catcggctac cctctccttc gtcaccttcc      4620
     acccatcgga aaaagagttt tacttaaaaa ttacaataga atttgggaag atagaacttt      4680
     tcccgatcaa tggcgacaca gcctagtcat tcctattccc aaaaatgact cgaatcgtac      4740
     tgaaccgagc ggataccgcc ccatctcctt gaccagctgc tgtggtaagg tcatggaacg      4800
     aatggtcaat cgaagactaa cacaattcat ccgtgacaac gatctcctcg accatcgaca      4860
     acacgcattt cgccaaggat gtggcacaaa cacgtacttc gcaacactcg gccaagttct      4920
     agacgacgcc ctcgaaaaag gcctccacgt ggacttggcc acactggacc tttcaaaggc      4980
     gtacaatcgt acttggactc caggagtgct tagaacactg gccagctggg gaatcagtgg      5040
     caacactttt gctttcatcc gtaattttct gacgaacaga acctttcaag tatgcatcgg      5100
     aaacacgaaa tcgaactctt ttccggagga aaccggcgta cctcaaggct ccgtgttggc      5160
     ggtaaccctc ttccttatcg ccatgaacgg agtttttgaa acgttaccaa aaggcgtttt      5220
     tatatttgtg tttgcggatg acattgttat cctcgttgca ggacacaaac caactttgat      5280
     ccgcaggaaa ctccaaaacg caatcaaagc agtacatgat tgggcactat ctataggctt      5340
     cgacctatca ccatccaaaa gccatttctc ccatatatgc tcaggaaggc atcgcaccaa      5400
     aaagaatcct cctaccatcg acggcgaaga aattcccttt gatgctacga tccgcgtcct      5460
     gggattatac ttagaccggc atctgagttt tcaaccgcac tgcgatcgta tcaaaaaaca      5520
     atgtgaaagt cgactaaacc tgctacgaat tatcaccagc aagcacacca aaaacaaccg      5580
     cgacgtgggt ctgcgtgtta ccaaagcaat tgtctgcagc aggctactgt acggtgccga      5640
     actgctgtgt agaaactccg aaaacgtgat cagcaaactt gcaccgacgt acaatcggtg      5700
     catccgcagt ttgtctggac tcctaccctg tacaccagca acatccacat gcgtcgaagc      5760
     tggaattccc cccttccgat acatttttgc gatatccgta tgctccaaag ctgtcagttt      5820
     cctggagaaa acaagcgggg atgacgaggg agtgttcctc ctcaaagagg caaacaaact      5880
     ccttcagcaa ttcgcccacc aaatcctccc cccagtgtcc acggtccact gggttggaga      5940
     tgaagcgtgg gacttctctc cacccaggat ctactggaca ctcaatacac caaccaagca      6000
     aaacctgaat cccactactg tgattccacg tttcaatgaa cttatcaaaa gaaagctgaa      6060
     cggctatgaa ctcttctata ctgacggttc aaagacttct agcgaagttg gctttggcat      6120
     tttcggaccc aatatcaata aatgcggagg cctacccaaa tccacctcga tcttttcggc      6180
     cgaagctacg gctattcttt cggcggttac agaatacagc tttacctgga aagctattgt      6240
     taccgactca gctagtgtac tgagagctct tgagaaccca aagaacaaac accctttggt      6300
     gcaagcaatc agaacagctt caaacagcaa caccatatat gtctgggtcc ccagtcattg      6360
     cggtatcaag ggaaatgaag ctgctgacaa gctggcagca gaaggcagat caaaaatacc      6420
     agcgcaccct gaagtacctg cagccgattt gaaaatatgg atcaaaacag tttttacttc      6480
     aacatgggag aacgaatgga atctagctcg agattctttt ctacggaaaa taaaaggtga      6540
     ccgacacaaa aaactggaag gaccaaagaa tactttctag actacgctgt ggttacacta      6600
     gattttcaca cgacctcgga tcccgggatg gtttcctcaa acaatgctcg gtgtgctcaa      6660
     cccatatgtc ggtagagcac ttaattataa attgccctgc attccaaatc atccgagatc      6720
     aacatgacat cggcctgagc attagagacg cattatctaa tgacgcagac agagaaaaat      6780
     cactaatcga attcctcaaa atcaccggct actaccaatc aacatagacc tgcgtaacta      6840
     cttacaacta ggtaaacgga tgggactaga tgaaacttgc ttactgacag gacgaacgac      6900
     gatgacaccc cgaaggccag aaactaaaga aaact                                 6935
//
ID   I-48_AAe    repbase;    DNA;    INV; 5673 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-48_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5673
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1319-1319 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..772
FT                 /product="I-48_AAe_1p"
FT                 /translation="LGLIRKPTRPFYPRPTRCFNCLDYGHIGRSCKKARRC
FT                 PNCCNAWHDEECSLPTFCLHCNENHSIYSSFCKKFKAEQEIVKIRIDRDIP
FT                 FPQARRLFYEQRGSYSQVMQQQANKPCGCRCSCSTPFQASTNAKTTANNNT
FT                 ETMDLTQTQTDDRNPITQNTISISGQTADHSKTDQNYTTQPDPFVDPPSQI
FT                 PGPSNHSKKSGKKNRNNTPVGYQSRDSSRGTGVDSPPRKKTLPSSCHSDAD
FT                 INHPHEHESRRTRQSK"
FT   CDS           738..4388
FT                 /product="I-48_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNMNQEERDNLNKSGRSILQWNLNGLKRHYNELRQII
FT                 SKYNVYALALQETHTREDFRIPHFQSYYCHDTGHARGTWGGVAIAVHDDYS
FT                 HHCIPLKTNLSVIAIQIHFPFTLTLVSLYLPHGVRDKNALTTLFKQLPQPY
FT                 LVLGDLNAHHSAWGSSKISPGGEIILQVIDEENLVLLNDGSHTHMTASTGN
FT                 TDAIDLSLGSLDLGTKLSWEVIDDTHDSDHYPILLKVETTDLTLRTRKKWK
FT                 INAANWNVFEDHITNNLPPGRESNMQSITRAIISAAEVAIPQSSGLCRPNT
FT                 VPWWNPELAEAIKNRRKALREFKRVPVGHPDKQAKKEEFNCAKKLARKLMW
FT                 DSKKRSWEEFVSSINKDTPVTTLWRKVRSLQGNYRPFKIPSLLSENRLVTE
FT                 PTDVANTLANHFERVSSNAGYSAEFTRNKIRSESRNPTFPPRLSADYNKPF
FT                 EMHELLHVIDTVRGSSPGPDGIHYEMIRRLPFHAKHTLLHEINRIWETGDF
FT                 PDAWRESLLIPIPKPGKDLKEPSNYRPISLTSCTSKIMERMVNRRLSHQIE
FT                 NQGLLDERQHGFRKGKSIYSHLTVLEGEFRDSISNNSHTEIVSLDISKAYD
FT                 ITWRRLIIDTMINWGLGGNLVKYVINFLQNRRFRVLVGGQQSEEKNQANGV
FT                 PQGSVISVTLFLIAINSLFSAVPKFVKVIIYADDIIIYISGKSHKAIRKRL
FT                 QQTLESLEKWSLKTGFRISHEKTTSMHVCRKRSHQDTPALKLEGFEIKQVQ
FT                 TMRILGMVFDSRLNWNAHIDKIKADVEPRINILRSISGNRLGGHPKVMLNI
FT                 YKAIIQSKLLFGAPIYNGASDAQLKKLDACQNKAIRISIGAFATSPIDSIM
FT                 SISGILPLKYLIWETSVKNLISLSSVKFAENRSFAGLERARDIAMSKLDFE
FT                 IPNIETYSTHPKSWAYKRPQICWKIKHAGGRTLERSIARQTFLQLRNKDFV
FT                 TAEFVYTDGSKVTGKVGAGIITENETYSIGLPADLSIFSAEAYAILEAIRL
FT                 PKNRESQRVICTDSESVVSAVENGHSKHPWVQEIEELLSLDNNTVLCWLPG
FT                 HMGIRGNELADAAAKLGLGMRPKEISIPAADLKREIKLKVRLKWENYWNEL
FT                 RDNKLREIKNTTSVWIPTGNRQEQTALTRLRIGHTRATHKHLFDKSDQVCE
FT                 TCGTFLDVKHILIDCHKYTEERKNFHIQGSLQEILSVDQSKELNLRKFLKA
FT                 SKLIEHI"
XX
SQ   Sequence 5673 BP; 1994 A; 1162 C; 1222 G; 1295 T; 0 other;
     actcggtctt atcagaaaac caacccgacc attctacccc cgtcctactc gctgcttcaa        60
     ttgtctcgac tatggacata ttggcagaag ttgtaaaaaa gcccgcagat gcccaaactg       120
     ctgcaatgcg tggcatgatg aagaatgctc tcttccaacc ttttgtctac actgtaacga       180
     aaatcattct atctactctt cgttttgcaa aaagttcaaa gcagaacaag agatagtaaa       240
     aatcagaata gatcgagata tcccctttcc acaagctcgc cgcttatttt acgagcagcg       300
     tggctcatac tcacaagtga tgcagcaaca ggcaaacaaa ccgtgcggtt gtagatgctc       360
     atgtagcaca cctttccaag cctcaacgaa cgcaaaaaca acagctaaca ataacacaga       420
     aacaatggac ctaacgcaga cccaaactga cgaccgaaac ccgataacac agaacactat       480
     ctcgatctca ggccaaacgg ccgaccatag caaaactgat caaaactaca caacccagcc       540
     cgaccctttc gttgacccac cctctcaaat acccggacca tcaaatcatt cgaaaaaatc       600
     aggaaagaaa aatagaaaca acacacccgt tggttatcaa tctagagatt ccagtagggg       660
     aactggggta gactcacctc cacggaaaaa aacgttaccg tcttcgtgcc actcggacgc       720
     tgatataaac caccctcatg aacatgaatc aagaagaacg cgacaatcta aataagtcag       780
     gaagatccat cctccagtgg aatctaaatg gcttgaaaag acattacaac gaactacgac       840
     aaattatttc caagtataat gtgtacgctt tggcgctaca agaaacacat acgcgtgaag       900
     attttagaat accacatttt caatcctatt attgccacga cacaggacat gccagaggaa       960
     cttggggagg tgttgccatt gcagtgcatg acgactattc ccaccactgt attccactta      1020
     aaacaaattt atccgttatc gccattcaaa tacattttcc gttcaccctg actctcgttt      1080
     cattatacct accccatggt gtgcgcgata aaaacgcact aactactctg ttcaaacaac      1140
     ttccgcagcc ttaccttgtg ctaggcgatc ttaacgccca ccactcagcc tggggaagca      1200
     gtaaaatttc tcccggcggc gagatcattc ttcaggtcat tgatgaagaa aacctcgtac      1260
     ttttaaatga tggatctcat acacatatga cagcaagtac aggcaataca gatgcaatcg      1320
     atctatcact aggctcttta gatcttggta ccaaactttc atgggaagta atagatgata      1380
     cacacgatag tgatcactat cctattttgc ttaaagttga aacaacagat ctaacactga      1440
     gaaccaggaa aaagtggaaa attaatgcag ccaactggaa cgtctttgaa gatcacatca      1500
     ctaataactt acccccaggc cgtgaaagca atatgcaatc aattacccgt gcgattatca      1560
     gcgctgcaga agttgctatc cctcaatcaa gtggtctttg tcgcccgaac accgttcctt      1620
     ggtggaaccc cgaattggcg gaagcaataa aaaatcgtcg taaagcttta agagaattca      1680
     agagagtacc tgttggacat cctgataaac aggcaaaaaa agaagaattc aattgtgcta      1740
     aaaaacttgc tcgcaagcta atgtgggatt ctaagaaaag atcttgggaa gaatttgtca      1800
     gtagtataaa caaggatacc ccagtaacaa cactttggag gaaagttcgt tccctgcagg      1860
     gtaactatcg accatttaag attccgagtc ttttgtctga aaaccgtctc gtaaccgaac      1920
     caacagatgt tgcaaatacg ttagcaaacc acttcgaacg tgtttcttcg aacgctggtt      1980
     actctgctga gtttacaaga aacaaaatac gatctgagtc tcgcaaccca acattccctc      2040
     ctcgactatc cgcagactac aataaacctt ttgaaatgca tgaactacta catgtaatag      2100
     acactgtacg tggttcaagt ccggggccag acggaataca ctatgaaatg attcgtagat      2160
     tgccttttca tgcgaaacac actttactgc atgaaataaa tcggatatgg gagacgggag      2220
     attttcctga tgcatggagg gagtccttac tcattccaat tccaaagcca ggtaaagatt      2280
     tgaaggaacc ctctaattat cgcccaatat ccctcaccag ttgcaccagt aagattatgg      2340
     agcgtatggt gaatcgtagg ttgtctcacc agatcgagaa tcaaggattg ctagacgaac      2400
     gacaacacgg attcaggaag ggaaaatcta tctacagcca ccttaccgtt cttgaaggag      2460
     aatttcgaga ttcaatatca aacaatagcc acacagaaat cgtatcattg gatatatcca      2520
     aggcatatga tataacttgg aggcgcctta tcattgatac catgatcaac tggggattag      2580
     gaggaaattt agtgaaatac gtcattaact ttcttcaaaa cagacgcttt cgtgtccttg      2640
     ttgggggcca acaaagtgag gagaaaaatc aagcgaatgg tgttccacag ggatccgtaa      2700
     taagtgtgac ccttttctta atagctatta actctttatt cagtgctgtg ccgaaatttg      2760
     tcaaagtgat aatttacgct gacgacataa ttatctatat ttcgggtaaa agccacaaag      2820
     ccattcggaa acgattgcaa caaacgcttg aatcactgga aaaatggtca ttaaaaactg      2880
     gtttcagaat ttcccacgaa aaaacaacaa gtatgcatgt gtgtcggaag cgatctcacc      2940
     aggatacacc agcattgaaa ttggagggct tcgaaataaa acaagttcaa acgatgagaa      3000
     tactggggat ggtttttgat agcagattga actggaacgc gcatattgac aaaatcaagg      3060
     cagatgtgga gcctagaatc aacatactgc gttctatatc cggaaatcga ctaggtggtc      3120
     acccaaaagt tatgctcaac atctataagg caatcatcca gtctaaactc ctatttggtg      3180
     cgccaatata taatggagct agtgacgctc aacttaagaa gttggacgcc tgccaaaata      3240
     aggcaatacg catttccata ggtgccttcg ctacaagtcc catagatagc attatgtcca      3300
     tcagcggtat tttaccactt aagtatttga tctgggaaac ttctgtaaaa aacctaatca      3360
     gtttatcctc agtaaaattc gcagaaaaca gatcttttgc tggcttggaa cgagcaaggg      3420
     atattgctat gagcaaactt gacttcgaaa ttccaaatat cgaaacatat tcaacacacc      3480
     caaagagttg ggcgtataag cgacctcaaa tatgctggaa aattaaacac gctggtggga      3540
     ggactttaga aagatcaatc gcacgtcaaa catttcttca actgcgaaat aaggacttcg      3600
     tcacagctga atttgtctac acagatggat ctaaagtaac cggaaaagtg ggagctggaa      3660
     taattacgga gaatgaaaca tacagtatag gattaccagc tgatctttca atattttcag      3720
     ctgaggctta tgctatttta gaagcaatac gtttgccaaa gaatagagaa agtcaaagag      3780
     tgatctgcac cgactctgaa agtgttgttt cagcagttga aaatgggcac tctaaacatc      3840
     cttgggtgca agaaatagaa gaactactct ccctagacaa caatacagtc ctctgttggt      3900
     taccgggaca tatgggcatc cgtgggaatg aactggcaga tgcagcagca aaattaggtt      3960
     tgggtatgcg tccaaaggaa atttcgattc cagcagccga tctcaaaaga gaaataaaat      4020
     taaaagtccg tttaaagtgg gagaactatt ggaacgaatt gagagataac aagttacgtg      4080
     aaatcaaaaa caccactagt gtgtggattc cgacgggtaa taggcaagag caaactgcac      4140
     taactcgtct acgaataggg cacactagag ccacacataa gcatcttttt gataaaagtg      4200
     accaagtttg tgaaacctgt ggaacctttc ttgatgtcaa gcatattcta atagattgcc      4260
     acaaatacac tgaggagcgc aagaatttcc acatacaagg atcactacag gaaattttga      4320
     gtgtagatca atccaaggaa ttgaacttga ggaaattttt gaaggcaagc aaactaatcg      4380
     aacacatctg aagcataaaa acccacgagg gtggccgtgc gggcgtagaa gtcatgttcg      4440
     tcgctacacc cttatcggta cacgtctcga tggtatgctg atgttcatgc tttttgatac      4500
     tcacgagggt tggctgtgcg gaagaggacg ttatgatcgt cgccacttcc ttatcagtac      4560
     acgtctcgct gagcaaaagc ttaattcgaa tcacggaaat caggatgagg agcaaagaag      4620
     aaggcaaaag gaaatcgtcg tggaaggaaa ctgtaggaaa gcaagccgga agtggacaat      4680
     aaggaaaaca tgccggaagg aagcagacag aagaagaaaa acgcaagaaa tgaaggaatt      4740
     ggaatcaaac ggaggagaac tgtagcaaga atttgaaaag gaagcaaaca aggatttgat      4800
     gcggcaatta aaggaagaaa cagtccgcct gaagaagaaa agtgatgaaa agtgagaaaa      4860
     tgaagaagag agaggaagac gaaaggaaaa gaagtataaa aacccacgag ggtggccgtg      4920
     cgggcgtaga agtcatgttc gtcgctacac cctgatcggt acacgtctcg atggtatgct      4980
     gatgttcatg ctttcttgaa actcacgagg gttggctgtg cggaagagga cgttatgttc      5040
     gtcgccactt ccttatcagt acacgtctcg ctgagcaaga gcataactcg aatcacggaa      5100
     aacaggatga ggagcgaaga agaaggcaaa aagaaatcgt cgtgggagga aactatagga      5160
     aagcaagctg gtagtggaca ataaggaaaa catgcaggaa ggaagcagac agaagaagaa      5220
     acggaaagaa atggaggaat tggaaccaac gagaagaata gaagcaggag ttcgacgaag      5280
     aaaaaaaaat aaggatttga tgcaggaatt aaaggaacaa gagccgaagg aagccgtcac      5340
     cgaacgaaac cgaaggagga ccgcatgaag aagaagagtg aagataagtg atgaaaagtg      5400
     agaaaatgaa gagaggttga agaaaaggaa aagaagtatg agttgtaaga gaaaatatgg      5460
     aaaagaaaag aaaagcaaga gatgacaaat gaacaaatgt gaagtgaaaa cattagaaac      5520
     atagatatcg aaaacgacga gaaggaaaac tcagatggac gaaaacaaaa tacctaagat      5580
     aagtacaaaa ttttatcatt tttagtatta agcttattta aatcgaatgc cgcctcaggc      5640
     ggtaaagata aataaaaaca acaacaacaa caa                                   5673
//
ID   I-49_AAe    repbase;    DNA;    INV; 6747 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-49_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6747
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1320-1320 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           419..1831
FT                 /product="I-49_AAe_1p"
FT                 /translation="MNGKTPPTVPPDIDPGASTSGFNLPNKQNRNKRTLPI
FT                 WMDRNDQYGDAQFLLLRGANDTPLARKPLVIEKSVELAAGGPIAGAKSESR
FT                 CTKYTLEVRNKSQVENLLSLKRLIDDTPVEVVYHPTRNVCRCVVTCWDFAE
FT                 TSTDDIIRRLQDQNVTDVRRITQRIGKNVVNTGTMILTIRGPAPPSYVRLG
FT                 LLQVPTRPYYPSPLLCYKCLSYGHTKTACKETEKCQNCSTIHDEMENCNRT
FT                 PYCKNCGENEKPTSRTCAVYRREQEVIKIKVDEGLTYAAAREAHRSRITSS
FT                 KGSFASIVQQRLINVQAAGDETNELKQQLKLQEEQNRALIVENEKLRNEIT
FT                 NLRKSVNELAETTKQLQLQLKQQPQCAAPSDIVASVPTVQLPGISKMQTRQ
FT                 QHRNTSESRKSAQYSSSEAKQQIKRHVSSPPKKPAKLRKSNRKKKHVEISS
FT                 NPASADETASEEGFSEARPDEEMSQN"
FT   CDS           1889..6658
FT                 /product="I-49_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNPKTNQKNGSQKLLYKNGKHVSNPHEPASSTSYVSN
FT                 NITNHSAIPRVCTTPGLFPAPTPTREVPEFSDEPLAAVGVGGLYSQASTHS
FT                 ILNYEQTTDALNILVIQSPSTSYTSYNSNIFVDNSAIPRVYTTPGLFPVPT
FT                 LTGEVPASPDEPLAAVGTGGLFSQASTHTISNHEQTTDASHILVSRPSPKR
FT                 PSSNNSNNCITYSAIPRVCTTPGLCPVPTPTGEVPASPDEPLAAVGTGGLC
FT                 SQASTHTIPNHEQTTDASHISVSRPVSKRPTPNNSSNPVTHSAIPRVYTTP
FT                 GLFPVPTPTREVPDITEEPLAAVGTGGLYLQASTNAISSYGQTSDPMHIPD
FT                 HSKNHSHLLRTTTSQSTSQNTVHVESTRATRNTCSPAEKCVAIQWNVNGLQ
FT                 ERYAELQLLVTEYQPIIIAVQETRLSRYEIMNRFSHAEYNWKFLSGPSSPS
FT                 QNGVGLAVSKSVPHSFLHVNSSMQVIAARVNHPICATYVSIYIPCHTSPSQ
FT                 LENELEQLITELPSPIVLLGDFNSHSLLWGGIKTDAKGAIIEQLSAKHNLT
FT                 ILNTGEHTRLDPRTGNTSAIDLSITSSNLAGRLRWMVDEDNRTSDHFPLIL
FT                 KTVANITSIHHRRRWLHDQANWVEFEDILLERIPRDSAPSIDELTQHIIYA
FT                 AEQSIPRTTGKIGRKAVPWWNQEVNAAIRARRKKLRKLKRMGENDPRRLQA
FT                 LSEFQQARNASKKIVREAKTNSWNKFVSGFNPQCPANEMWRKVNSFCGKRS
FT                 FQRQVLVIDGETVEDPVQVAEHLAEFFESVTKSADPCLTIEYGVEPVTTPN
FT                 EEINIPFSIDELMWALEKGGNTSVGIDNISYPMLRHLPFRIKMQMLNTINH
FT                 LWNSGRIPDAWKEGLIVPLSKPGKDPKQIGNQRPITLLSCFNKTLERMVNR
FT                 RLVDFIENHYKFNSHQFAFRRGRGVDTYFAALEKDLRKPFDEGEHCELLSI
FT                 DLQKAYDRADRNQIVAKLTSWGVNGKMLNFIKSFLSNRSFRVLVGDVQSTR
FT                 RTQETGVPQGSILSVSLFLVLMETVFEKIPKGIRIFVYADDVVLLAIDKDP
FT                 KLARQKIQKAASTLGLWAEQTKMIISAEKSSCMHICRKRKHPAVPPIEISS
FT                 TVVPEVAYTRILGVIIDKRLNFKRHIAAVRTNVQTVLNFLKVIGNRMNGGT
FT                 RKTMLQVTKAMLLPKIFFCINFINSGSVTNMKRLLPLFNAGVRESSGVFRS
FT                 SPIESIMAEAGQLPFEYTLTLTEITKAIRLLERDTKLFPENYSQSQSITTY
FT                 PSVERAKNAYEQLTQQELPRIAILHRIGDRSWNEPRIRIDWEIKQKFKVGD
FT                 PPAKAQQLFLYLTSTKYMLYQHVFTDGSVDRYKVGFGVATENESFSKKLPK
FT                 ECSIFSAEAKAIWFAIAKTCSNESATVIFTDSASVLTALEKGHSRHSWVQE
FT                 IETVAKGKQLTLCWIPGHTRISGNEKADALAKAGEDDEFYNCDIPAEDALR
FT                 CCKHEIRLAWENQWRNSTTFLRNIKATTFQWKDRQNPTLRRAISRLRIGHT
FT                 RLTHQHLFNRETNVCPTCGVPVTVTHLLLDCRAYEDQRKECELGLTIGDIL
FT                 TNEEENEKKLENFLRKTELINKL"
XX
SQ   Sequence 6747 BP; 2238 A; 1575 C; 1408 G; 1525 T; 1 other;
     agttttgtca gtgtatccag gtccgagtta cattgcgcga cttacctcga ttatttttca        60
     ctattttttc catcaaatag ccagcgataa tagctggaac tacggctaac acgtcgccag       120
     atggtgtagc ccgtatattc acaaaatttc agtccgaact cctccaaacg cgtcggtttt       180
     tcgcgagttg aaaaaaatag tttcgcaata aacgtaccga gcagtggaca tcttgtgcat       240
     agagacgaat caattattgt taagactgca tgtgttagtt agctataact attgtaccgc       300
     tgcaaagaaa cgcagcatcc acagcaattg acgagtgact gagcgactgt ttgtgagcga       360
     acttctatcc acatagaagt cgactctctg tttgcgatag tacttcacct ccaatgaaat       420
     gaacggcaaa acaccaccaa ccgtgcctcc cgatatagat ccaggagcaa gcacgagtgg       480
     tttcaatttg ccgaataaac aaaacagaaa caagagaaca ttgccaatat ggatggatag       540
     gaacgatcaa tacggtgatg cccaattctt gttactaaga ggtgctaatg atacccctct       600
     tgcgagaaaa ccgctggtca tagaaaagtc tgtcgagctg gctgccggtg gcccgattgc       660
     tggggcaaaa tcagaatcac gttgtacgaa atataccctt gaagtgcgca acaaatctca       720
     ggttgagaac ctcttgagtc tcaaacgatt gatcgatgat acacctgtag aagtagtata       780
     tcatccaacg cgtaatgttt gccgctgtgt tgtcacatgt tgggattttg cagaaacatc       840
     tacagatgat atcatcagaa gactccagga tcaaaatgta acggatgttc gaaggattac       900
     acaacgaatt ggcaaaaatg ttgtcaacac agggacgatg atactcacta ttcgcggacc       960
     tgccccacca agttacgttc gactcggact cctgcaagtg ccaacgcgcc cttactatcc      1020
     cagccctttg ttgtgctaca agtgtctgtc ttatggtcat actaagacag cttgtaagga      1080
     aacggaaaaa tgccagaact gctcgactat acacgatgaa atggaaaatt gtaatcgtac      1140
     accctactgc aaaaattgcg gagaaaacga aaaaccaacc agtcgcacat gtgcagtata      1200
     tcgacgggag caagaggtca tcaaaattaa ggtcgacgag ggtctgactt atgctgcagc      1260
     gagagaagca catagatcca gaatcactag ctcgaaaggc agtttcgcca gcatcgttca      1320
     gcaacgtttg attaacgttc aagctgccgg tgatgagact aacgagctta aacaacaatt      1380
     aaaactacag gaagagcaga acagagctct tattgtagaa aacgaaaaac ttcgaaatga      1440
     gatcaccaac ttgcggaagt cagtcaacga acttgctgaa acgactaaac aattacaact      1500
     acaactcaaa cagcagcccc aatgtgcagc cccaagcgac atagtggcaa gtgttcctac      1560
     agtgcaactg ccgggaatat caaaaatgca aacgaggcag caacaccgta acacgtctga      1620
     aagcagaaaa agtgcacaat attcaagcag cgaagcaaaa cagcaaatca agcgacacgt      1680
     ttccagtcct ccgaaaaaac cggccaaact acgaaaatca aacaggaaga aaaaacacgt      1740
     tgaaatctcc tcgaatccag cctcagcaga tgaaaccgct tcagaagaag gcttttccga      1800
     agcacgaccg gatgaagaaa tgtctcaaaa ttaaatccca tcaaaacgct ggcaatagca      1860
     agctacacta ccaacacaac atcaaacaat gaatcctaaa actaatcaaa aaaatggaag      1920
     tcaaaagtta ttgtacaaaa atggaaaaca cgtcagcaac cctcatgagc cagcaagctc      1980
     cacatcgtac gtcagcaaca acatcacaaa tcattcagcg attccacggg tttgtacaac      2040
     cccaggcctt ttccctgcac caaccccgac cagagaagtt ccagaatttt ctgatgagcc      2100
     tttggcggca gttggtgtgg ggggcctgta ctcacaggca agtactcatt caattctaaa      2160
     ttatgaacaa acaacagacg ctctgaacat tctagtcatc cagtctccat caacaagtta      2220
     cacatcgtat aacagcaaca tattcgtgga taattcagcg attccaaggg tttacacaac      2280
     cccaggcctt ttccctgtac cgaccctgac cggagaagtc ccagctagtc ctgatgagcc      2340
     tttggcggca gtcggtacag ggggcctgtt ttcacaggca agtacccata caatttcaaa      2400
     ccacgaacag acaacagacg cttcgcacat tttagtatcc cggccttcac caaaacgtcc      2460
     ttcatcaaac aacagcaaca actgcataac ttactcagcg attccaaggg tttgtacaac      2520
     cccaggcctt tgccctgtac cgaccccgac cggagaagtc ccagctagtc ctgatgagcc      2580
     tttggcggca gttggtacag ggggcctgtg ttcacaggca agtacccata caattccaaa      2640
     tcacgaacag acaacagacg cttcgcacat ttcagtgtcc cgacctgtat caaaacgccc      2700
     cacaccgaat aacagcagca accccgtgac tcattcagcg attccaaggg tttatacaac      2760
     cccaggcctt ttccctgtac cgaccccgac cagagaagtc ccagatatca ctgaagagcc      2820
     tttggcggca gttggtacag ggggcctgta cttacaggca agtaccaatg caatatcttc      2880
     ttacgggcag acatcagatc caatgcatat tccagatcat tcgaaaaacc actcacacct      2940
     attgcgaacc actaccagcc agtcgacctc tcagaacact gtacatgtcg agtcaacacg      3000
     tgctactcga aacacgtgca gcccagctga aaaatgtgta gctattcagt ggaacgtaaa      3060
     tggtcttcaa gaacgatatg ctgaactcca actattggta acagagtatc aaccaatcat      3120
     aatcgcggta caagaaactc gactgtcgcg gtacgaaata atgaatagat tctcwcatgc      3180
     cgagtacaat tggaaatttt tatcggggcc atcatcacca tctcagaacg gagtgggcct      3240
     tgctgttagc aaatcagtcc cgcatagttt tctgcatgtg aattcatcaa tgcaagtcat      3300
     cgccgccaga gtcaaccatc ctatctgtgc tacttatgtc tcaatctaca taccttgcca      3360
     tacttcacca agccagttag aaaatgagtt agagcaactg ataacggaac taccttctcc      3420
     tatcgtgctg ctgggtgatt ttaattccca tagcttactc tggggaggca taaaaactga      3480
     tgccaaagga gcaataatcg aacagctctc agcgaaacat aatctaacca tcctcaatac      3540
     tggggaacac acgcgattgg accctcgtac tggaaacacg tcagcaattg atttatcaat      3600
     aacatcatca aacctagcag ggcgactccg gtggatggtt gatgaggata accgcaccag      3660
     tgatcatttt ccactgatcc tcaaaactgt agccaacatc acaagcattc atcatcgtag      3720
     gcgttggttg catgatcagg caaactgggt agagtttgag gatatactgt tggaaagaat      3780
     tccacgtgat agcgctccat cgattgatga actcacccag cacatcatct acgcagcgga      3840
     gcaaagcata ccacgaacga ctggaaaaat cggccgcaaa gctgttccat ggtggaacca      3900
     agaagtaaat gctgcaatac gagcaaggcg gaaaaaactt cggaaactta aaaggatggg      3960
     cgaaaacgat ccacgcagac tacaggcttt aagtgagttt caacaggcac gaaacgcgtc      4020
     aaaaaagatc gtcagagagg caaaaaccaa ttcgtggaac aagtttgtct ctggattcaa      4080
     cccacaatgt ccagccaacg aaatgtggcg gaaagtaaat tccttttgcg gaaagagaag      4140
     ttttcaacga caagtgctag ttatcgacgg tgaaactgta gaagacccag tacaggttgc      4200
     cgaacatctg gcggagttct tcgagtcagt tacaaaatct gcagatcctt gcttgacgat      4260
     tgaatacggt gtagagccgg ttacaacccc caacgaagaa atcaacattc cttttagcat      4320
     cgacgagctc atgtgggctc tcgaaaaagg tggaaacaca tcggttggca tcgataacat      4380
     cagttatccg atgctaagac atctcccgtt tcgaataaaa atgcaaatgt tgaacacaat      4440
     caatcatctc tggaactccg ggcgcatacc ggatgcatgg aaggaaggat tgatcgttcc      4500
     tttatcaaaa ccaggaaaag atcctaaaca aattggcaac caacgcccga taacactgct      4560
     aagctgcttt aataagactc ttgaaaggat ggtgaataga cggctagttg atttcattga      4620
     aaaccattac aaatttaatt cacatcaatt cgcctttcga agaggaagag gagtagacac      4680
     gtactttgcg gcactggaga aggacttacg taaaccattc gacgaaggcg aacactgtga      4740
     attactgtcc attgatctgc aaaaagccta tgacagagct gaccgaaatc aaatcgttgc      4800
     aaaactcacg agctggggag ttaacggtaa aatgctcaac ttcatcaaaa gttttctgtc      4860
     taacagaagt tttcgagtac tggttggcga cgtgcaatct acgcgtcgaa ctcaagaaac      4920
     aggagtccca caaggttcga ttctctcagt atcgcttttt ctagttttaa tggagaccgt      4980
     gtttgagaaa ataccgaaag ggatacgaat attcgtctac gctgatgatg ttgtattact      5040
     ggccatcgat aaggacccta aattggcgcg ccaaaaaatt caaaaagcag cttcgacgtt      5100
     agggttatgg gctgaacaaa ctaaaatgat tatatcggct gaaaaatcaa gttgtatgca      5160
     catttgcaga aagcggaaac acccagcagt tccaccaatt gaaattagta gcactgtagt      5220
     tccagaagta gcgtatacaa ggatactagg agttataata gataaacgac tcaacttcaa      5280
     aagacacata gcagccgtgc gaaccaacgt tcagactgtg cttaacttcc tcaaagtgat      5340
     tggaaataga atgaacggtg gaacgcgtaa aacaatgcta caagtcacaa aggcaatgct      5400
     tctccccaaa attttcttct gtataaactt catcaacagt ggcagcgtaa caaatatgaa      5460
     gagactacta cctttattca atgcaggtgt tcgcgaatca tcgggagtct tcagatcaag      5520
     cccgatagag tctataatgg ctgaagctgg acaattgcca tttgaataca ctctaactct      5580
     cacagaaata accaaagcca ttcgattatt ggagagagat actaagcttt ttcctgaaaa      5640
     ctattcccaa tcacaatcga taacaaccta cccatcggtt gaaagagcca aaaacgctta      5700
     tgaacaactc acccagcaag aattacccag gattgcaata ctgcaccgga tcggtgacag      5760
     atcatggaat gaaccaagaa ttagaatcga ctgggagatc aagcagaaat tcaaagttgg      5820
     tgacccacca gcaaaagctc aacagttgtt cctatactta acttcaacta aatacatgct      5880
     gtaccaacac gtgtttacgg atggctcagt ggacagatac aaagtaggct ttggtgtagc      5940
     aacagaaaac gaaagtttta gtaaaaagct acccaaagaa tgctctatat tctctgcgga      6000
     agcaaaagcc atttggtttg caatcgccaa aacctgttcg aacgaatcag ctacagttat      6060
     attcacagat tcggcgagtg ttctgacagc tctagaaaag ggccactctc gtcactcttg      6120
     ggtacaagaa attgaaacag tcgcaaaggg aaaacaacta accttatgct ggattccggg      6180
     acatacgagg atttcaggta acgaaaaagc agatgctctg gccaaagcag gcgaggatga      6240
     cgaattttat aactgcgaca ttcctgctga ggacgcacta cgatgttgca aacatgaaat      6300
     aagactagca tgggaaaacc agtggagaaa tagtacaact tttctgagaa acatcaaagc      6360
     aacaacattc cagtggaagg accgacaaaa cccaacgctg aggagggcca tcagtcgtct      6420
     acgaatcggt cacacaagat tgacccatca acatctgttc aaccgtgaaa ctaatgtgtg      6480
     cccaacatgc ggagttcctg ttacagtaac tcacctgctt ttggactgta gggcttacga      6540
     agatcaaagg aaggaatgtg aactagggtt aactataggt gatattttga caaacgaaga      6600
     agaaaacgaa aaaaaattgg aaaatttctt gaggaaaact gaattaatca acaaattatg      6660
     aactgtagct aagacattgt taagaaataa aactttgaag gatgaatggc cacttccgag      6720
     gctaaaatcc aaaaaaaaaa aaaaaaa                                          6747
//
ID   I-4_BTa     repbase;    DNA;    INV; 5621 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5621
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 697-697 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1659
FT                 /product="I-4_BTa_1p"
FT                 /translation="MPGSSEKVFIFGDKDSSSKDTQAKMADLPQNAHSGGT
FT                 GEPIQPPPTDDTTLQKIYPESTNTDNSSDQPDQLFYNDKCSAPFVVNISKL
FT                 PVSDRSKIPHIHPLQLSRILRQTEVNGIVSIIKVNRNTSQVKFNSLFDANS
FT                 FIANHKLDRAKYSVFIPKHRILKKGILKDIPPEYSEKEIREMISCEHKVYE
FT                 VKRIHKYDPIKKTKYPLPLMVVTFVANSLPEKVKLDYYIAPIELYINPVQL
FT                 CFNCFKFGHLQRFCRSKKRCQKCGDDFHELQDCPKSELSCLNCKGPHLPTN
FT                 RSCPSRKEFRKVNGIMAESNISFKEALAIKDSYSNDYKFGNNKKFSNRVKT
FT                 HTVTNSNNRFTALGHEEFPELNNSRKVNSSSKQTSRSKSHDRLSYPKKKRR
FT                 ADDDFPSEWVNRLKSRDPPPSQDNKETNSTSSPPPPPNETDNTDSNLEFVG
FT                 LQVDIRADSSPISMDTSDSHPDLISDQQDYTPPRIQVPELIINSISKNNNN
FT                 LSAPPTN"
FT   CDS           1752..5429
FT                 /product="I-4_BTa_2p"
FT                 /translation="MSFSLFFWNIHSIRANGFDINDFLRTYQPDSFLLNET
FT                 WLKPQDNIKTKSYITYSASRVDGYGGLLSGHKNIWKSELVPELSYNSNDPT
FT                 DLEISTTKIVDKKEPNRTIYFINVYATPKYKGDFQPLITILQDLETEKVIL
FT                 AGDLNSHHPTWGYPYSDRKGRALIDIFNDHDMFVVNSLNPTPTRITRPNQD
FT                 PSFTDLIVIKNSLAASSNLTVLDIPSGSDHHPLIFTFNPNLTPICSDIPPN
FT                 NPTPPLINWKKFAKIVEQQFKIIENVRQKDYDVWNAVIQFALENSKFSPKE
FT                 NSRPPSHQLSKHERWWSVECQKAKNLRAQCLNNFKTTNSYEDLIAYRISCN
FT                 KFKLTVRKAKRDSWHKYCSTINRNTPTSEIWAKLKTQRLSKEPVRSKDDSW
FT                 VKDFQAKFSPDYVESEPLHMDVLDEDPIFFSYDYFEQTLLTMSKKTPGKDR
FT                 ITAKLLKVLPPIAKVYLYKVFLKTMNLGTTPAKWNEVIIKPIKKPGKPENI
FT                 HTSYRPIALLSIVRKAYEKILRGFIEEHVEHHNLLSPVQFGFRKHFSLFDN
FT                 HNVLNQEILEALNRNEVLKVVFLDIQGAYDSVHIPTLVKMMKHLRINKRLI
FT                 KSVYWLFGRKSVYIQLYKVEYGVRISFVGLAQGSVLSPLLYLIYTCKIHKA
FT                 VTFGRMLEFADDIAIYIRHKIEEVAARLLQSDLDNLIKALDQIDLTASAEK
FT                 TKAITFSRKRKLSETPIFLYNQAIIEVLDFIYLGLKYDRKFTWLAHVKYIS
FT                 EKLTRNTNLVNVLTGVKWGTHQIFARTLFQGLIFSVTDFGIQYYLNRKTAS
FT                 KLTVHINQCIRRIFGFMRSTPTNAMYVESGIPPIEMRARLVTDKFILKNCN
FT                 FNLPSKKQFIDKLLHLGNNSHPGITNNPPLILSRALSLEHVIAQVESAENR
FT                 QYFFKSYNRNASINVSFPIERKGDLGANKLFNAFREENKESTFIYTDGSIS
FT                 SESATAGIFCPELNIARTLLLNKHLTILNAEMRGIFEATVILYEKNIQEAA
FT                 ICTDSMGAIQSITNLKSSTDKQDLQDIRNFLLKHPNIRLVWTPGHEQIWGN
FT                 EEADKLTRNHDGAIDIRLEKIHYSNFTPYLKENMIAAWQQEWENSSQVKGA
FT                 RLFSIQNTVSTSPWFSTIFLPKDTTNVISRLRVGHGRFAAHLRRINLADSN
FT                 LCACGQIATIDHILLQCNQLSNLSSLFDQLSQIGVYFPINSATLLADPSKN
FT                 KYSILSNFIRSNKIIV"
XX
SQ   Sequence 5621 BP; 1912 A; 1432 C; 882 G; 1392 T; 3 other;
     cagtccccgc ctcgccgcgt tcgtgtacgt accgtgttag cgtgttactt aatcagtaat        60
     atagtttacw caagtgcctt gtggataata gtgttgatta ttggtggtaa gattccacat       120
     gctcaatccc tgattcccag gatccctaca atgccaggat ctagtgaaaa agtgtttatt       180
     tttggtgata aagactcaag ctccaaggat acccaagcca aaatggccga ccttccccag       240
     aatgctcatt ccggcggaac aggcgaacct atccaacctc ctccgactga tgatacgacc       300
     cttcaaaaaa tctatcccga aagtacaaac acagataact cctcagatca accggatcag       360
     ctcttctaca atgacaagtg ctctgcaccc ttcgtcgtca acatatccaa acttccagtg       420
     tctgaccgaa gcaaaatccc ccatatccac cctcttcaac tcagcaggat tcttcgtcaa       480
     actgaggtga acggaatcgt atctattatt aaagttaata ggaacacatc ccaagtgaaa       540
     ttcaattccc tatttgatgc taactcattt attgccaacc acaaattaga ccgggcaaaa       600
     tactctgtat tcatccccaa acacagaatt ctgaagaagg ggattctgaa ggatattcca       660
     cctgaatact ctgagaaaga aatcagagag atgatctcat gtgaacataa agtctatgaa       720
     gtcaaaagaa tacacaagta tgacccgatt aagaagacta aatatcctct accattaatg       780
     gtcgttacct ttgttgctaa ctctctacct gaaaaagtaa agctcgatta ctacatagct       840
     cccatagaac tatatattaa cccagttcag ttatgcttca actgtttcaa atttggtcat       900
     ctccagcgtt tttgtcgcag taaaaaacga tgtcaaaagt gcggtgatga ttttcatgaa       960
     ttacaagact gccctaaatc tgaacttagc tgcttaaatt gcaagggccc acaccttccc      1020
     accaaccgta gctgccccag taggaaagaa ttccggaaag tgaatgggat aatggcagaa      1080
     agcaacatca gctttaaaga agcacttgca atcaaggact cttacagcaa tgattataaa      1140
     tttggtaata acaagaaatt ctccaacagg gtgaaaactc atacagttac taatagtaat      1200
     aacaggttca ccgccctagg acatgaagag tttcctgaac tcaacaactc tcggaaagtt      1260
     aactcttcct ccaaacaaac ttccagaagc aagtcccacg atagactctc ctaccctaag      1320
     aaaaaaagaa gagcggacga cgacttccca agtgaatggg tcaatcgtct gaaaagtcga      1380
     gaccctcctc catcccagga taataaagaa accaactcta cctccagccc gcctccaccc      1440
     cccaacgaaa ctgataatac ggattctaac ctggaattcg taggtctcca agtggacatt      1500
     cgcgctgact cctcaccgat ttccatggac acctctgatt cccaccctga tctcatttcc      1560
     gaccaacaag actatacccc accaagaata caagtaccag aattaatcat caactcaatt      1620
     agcaagaata ataacaactt atcagcacca ccaactaact aatacccttt catctttaaa      1680
     ttcaccacta actaccaacg tagaagaacc tccaagtcac atcatctaac taaactcaat      1740
     ctattttttc tatgtcattt tctctatttt tctggaatat tcacagcata cgagcgaacg      1800
     gctttgacat taacgatttt ctacgcacat accagccaga ttctttttta ctgaacgaaa      1860
     catggctaaa acctcaagac aatattaaaa caaaatctta cattacatac agtgccagca      1920
     gagtggacgg atacggtggc ctcctctctg gccacaaaaa tatctggaaa tctgagttag      1980
     tcccagagtt aagctacaac tccaacgatc caactgatct agaaatttcc accacaaaaa      2040
     ttgttgataa aaaagaacca aatagaacta tctacttcat caatgtctac gcaacgccaa      2100
     agtacaaagg agacttccaa cctctgatca ccattctcca agatctagaa accgaaaagg      2160
     tgatcctagc tggtgatctc aactcccacc atcctacttg gggttatccg tattcagaca      2220
     gaaaaggcag agccctaatc gacatattca acgatcacga catgtttgta gtcaactctc      2280
     tcaaccctac tcccacaaga ataactcgcc caaaccagga tccaagcttc actgatctaa      2340
     tcgtcatcaa aaactcactg gcagcatcgt ccaatttgac agtcctggac atcccatcag      2400
     gaagcgacca ccatccttta attttcacct tcaacccaaa cttaactccc atatgctctg      2460
     atattccacc gaacaacccc actcctccac tgatcaactg gaagaagttt gctaaaatag      2520
     tggagcaaca attcaagatc atagagaacg tccgccaaaa agactacgac gtctggaatg      2580
     cagtaatcca attcgctctt gaaaactcga aattctcccc caaagaaaat tccagacccc      2640
     cttctcacca gttatcgaaa catgaaagat ggtggtctgt agagtgccaa aaagctaaga      2700
     acctgagagc acaatgctta aacaacttca agacaaccaa ctcatacgaa gaccttattg      2760
     cttaccgtat cagctgcaac aaatttaaac tgactgttcg aaaggcaaaa agagacagct      2820
     ggcacaaata ctgctctacc ataaacagaa acacgcccac cagtgaaatt tgggccaagt      2880
     taaaaaccca acgcctctcc aaagagccag taagatctaa agacgactca tgggtgaaag      2940
     actttcaagc aaagttctcc cctgactatg ttgaatctga acccctacac atggatgtac      3000
     ttgacgaaga ccccattttc ttctcctatg attactttga acagactctt ttaacaatgt      3060
     ccaagaaaac cccaggaaag gacagaatca ctgcgaaact ccttaaagtg ctccctccga      3120
     tagcgaaagt ttacctttac aaagttttcc tcaaaacaat gaaccttgga accaccccgg      3180
     ccaaatggaa tgaggtaata attaagccaa ttaaaaaacc tggcaaacca gaaaatattc      3240
     acacctctta tagacccata gcgcttctct ccatcgtcag gaaggcctat gaaaaaatcc      3300
     taaggggttt cattgaagaa catgtcgaac atcacaacct cctatctcct gtgcaatttg      3360
     gattccgaaa gcatttctcg ttatttgaca accacaacgt attgaatcag gaaatcctag      3420
     aagccctaaa ccgaaatgaa gtactaaaag tagtcttcct agacatacaa ggagcatacg      3480
     attcagtcca cattcccaca ctggtaaaaa tgatgaaaca cctgcgaatc aacaaaagac      3540
     ttatcaaatc agtatactgg ctatttggaa ggaaatcagt ctacatccaa ctttataaag      3600
     ttgaatatgg agtcagaatt tcattcgtcg gcctagcaca gggctctgtt ctaagcccac      3660
     tgctttacct catttacacc tgcaaaattc acaaagcagt caccttcggt aggatgttag      3720
     aatttgcaga cgacattgct atttatatta gacacaaaat cgaagaagta gccgctagac      3780
     tcctacaatc ggacctcgac aaccttatta aagccctaga ccaaatcgac ctcacagcat      3840
     cwgcagaaaa gaccaaagca attaccttct cccgcaaaag gaaactatcc gaaactccaa      3900
     tattcctcta caaccaagct atcatcgagg tactcgactt catctatttg ggtttaaaat      3960
     atgataggaa attcacctgg cttgcacatg tcaaatacat atctgaaaaa ctgactagaa      4020
     acaccaacct agtgaatgtt ctaactggtg tcaaatgggg tactcaccaa atatttgcaa      4080
     gaactttatt ccaaggcctc attttctctg tcactgattt cggtattcaa tactatctca      4140
     acaggaagac agcatcaaaa ttgacggttc atatcaatca atgtattcgg agaatttttg      4200
     gattcatgag atccactcct acaaacgcca tgtacgtaga aagtggcatc cccccaatcg      4260
     aaatgagagc aaggctcgta acagataaat ttattctaaa gaactgcaat tttaacctac      4320
     catccaaaaa gcaatttatt gacaaattat tacatctggg gaacaacagc cacccaggaa      4380
     ttactaacaa ccctcctcta attctctcaa gggccctctc tcttgaacat gttatcgccc      4440
     aagtagaatc agctgaaaat agacaatatt tcttcaaatc ttacaatcga aatgcctcca      4500
     taaatgtctc cttccccatc gaacgcaaag gagatttagg cgcaaataaa ctcttcaacg      4560
     ccttcagaga agaaaataaa gaatcaactt tcatttacac tgatggttct atctccagtg      4620
     aatcagcaac tgccggtata ttctgcccag aactaaatat agcaagaact ctcttattga      4680
     ataaacatct cacaattcta aatgcagaaa tgagaggcat attcgaggcc acagttatac      4740
     tctacgaaaa aaatatccag gaagctgcaa tttgtacgga ctctatggga gccatccaat      4800
     caataacaaa ccttaagtcc tctacagata agcaggattt gcaagacatc agaaacttcc      4860
     tcctaaaaca ccctaatatc agattagtgt ggaccccagg acacgaacaa atatggggaa      4920
     atgaagaagc agacaagcta accagaaatc atgacggtgc tattgatata cgccttgaaa      4980
     aaatccatta ttccaatttt actccttatc tcaaggagaa tatgatagcc gcttggcaac      5040
     aagaatggga aaattcctca caagtcaaag gcgcacgact cttcagtatc caaaacacag      5100
     tatctacttc accatggttc tctactatat tcctcccaaa agacaccacc aacgttattt      5160
     cccgcttgag agtgggtcac ggacgatttg cagctcatct acgaagaatc aacctagctg      5220
     actcwaacct gtgcgcttgt ggacaaattg cgactatcga ccacatactt ctccagtgca      5280
     atcaacttag taatttatca tcactcttcg atcaactgag ccaaattggc gtctacttcc      5340
     ctatcaactc agccacccta ttagctgatc catctaagaa caaatactcc attctgagca      5400
     acttcatccg ctccaacaaa ataattgttt aactttaaac ttccactccc aacatccaca      5460
     catggaataa tccaagcaaa taatcaacac cctactttct tctaccacca ataatcaata      5520
     atctagctat ctactgacca tttatcttgt tagtggctgt ttgtgcctat gcactaaggc      5580
     caaagcaccg ttacagggca aaaagtaaaa actaaaaaaa a                          5621
//
ID   I-4_CQ      repbase;    DNA;    INV; 5624 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   An I non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5624
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 110-110 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >99%
CC   identity. It is phylogenetically close to Loner elements in
CC   Anopheles gambiae.
XX
FH   Key           Location/Qualifiers
FT   CDS           407..1672
FT                 /product="I-4_CQ_1p"
FT                 /translation="MSGGEGGMESDGEDDEASNVRTKIYPNGSTGPFIVFF
FT                 RPKLKPLNLISITRDLTRKFSGVSEIKRVHANKIRVVVNNISHANEIVTCE
FT                 LFTLEYRVYIPSRIVECDGVVTEEGLTLDELYECRGYFRNPAVNPVKIIEV
FT                 KQLFSSSTQDGKTVYSPSNSFRVTFEGSALPKYIEIDKARLPVRLFVPKVM
FT                 NCQKCKQLGHTTAYCCNKARCIKCGEEHDDSSCTQAATKCLYCDEDALHKL
FT                 SDCPTYKQRQEKLKLSLKQRSNRTFAEMLKQATEPLNSGNIYNILPSDETV
FT                 ADSINAGASTSGTGNSRKRNNGSPSIRRKEIKLSPQQDRIPNFQPTPPGIN
FT                 PPGFPPLPRPPPLTPKPNPNKPKQGLIGFTVLINQILDALQISTGVRTVVI
FT                 TLIPFVRTFLIKLSEQWPLISTIISFDG"
FT   CDS           1668..5354
FT                 /product="I-4_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MDNSTSKMNEEISVLQWNCRSIVPKLDSLKILAHETK
FT                 CEVFALCETWLPPNDDGLNFPNFNIITKNRDDSYGGVLLGIRHGLTFQRLN
FT                 LPSQPGIEVVAIQVQIKNKCFSIASVYIPPKTSVNRQQLKNIVEMMPEPRL
FT                 ILGDFNSHGTGWGELYDDNRANLIYDLCDEFNLTIKNSGEITRIARPPARE
FT                 SRLDLSICSRTLSIDCTWNVIQDPHGSDHLPILISIATGNQPVEPVSYTYD
FT                 LTKNIDWKRYALIITEAIESIDPLTPQEEYTFLANLIHSSAIQAQTKPIPS
FT                 ASSRMRPPSLWWDKECSEVYSEKSNSFKIYRRTGQIESYEQYLLLEIKFQN
FT                 LVKCKKRNYWRTFVDGLSRETSMRTLWTTARRMRNRAPKNASEEYSDRWLH
FT                 NFARKVCPDSTIPKQKRYSNDLVFPELSSAFSMIEFSVALLSCNNTASGMD
FT                 GIKFNLLKNLPSVAKCRLLNLFNIFLEQNIVPEVWRQVRVIAIQKPGKPAT
FT                 DHHSYRPICMLSCVRKLLEKMILFRLDKWMESNGLLSDTQFGFRRGKGTQD
FT                 CLALLSTEIQLAFAKKEQMASIFLDVKGAFDSVCIEVLADKLHKSGLPPLL
FT                 NNFLYNLLSEKHMNFIHGNVTITRSSFMGLPQGSCLSPLLYNFYVNAIDSC
FT                 LDNGCTIRQLADDCVVSVTGQSANHLSEPLQNTLNNLSRWAMELGIEFSTE
FT                 KTEMVVFSRKHNPPSLKLYLLGKLIIQSLVFKYLGIWFDSKGTWACQIRYL
FT                 KQKCQQRINFLRTITGTWWGAHPTDLIRLYQTTIRSVLEYGCFCFQSAAKI
FT                 HMIKLERIQYRCLRIALGCMHSTHTLSLEVLAGVLPLKTRLYQLAHRTLIR
FT                 CEIRNPLVIQNFDLLLDKNPQTRFMTIYHNHITKEISPSNFTPNRSTISST
FT                 HNPSVLFDLSMQQEIKMIPASQLSQLVPHIFLSKYNHIKAENMFYTDGSLI
FT                 EGSTGFGVFNTKVSAFHKLQNPATVYVAEQAAIHYALGIINLQPQDHYYIF
FT                 SDSLSTIEALRSLKSPNSSSFFFHKIKEIMSLLVEKKYKITLVWIPSHCSV
FT                 LGNEKADSLAKQGALEGSTYDRIITYDEYFTIPRQESLVSWQTKWDKSEMG
FT                 RWLYSIRPKVSTTSWFKHMNVERDFIRVISRLMSNHYLLNAHLYRINLKDD
FT                 NLCGCGEGYHDIEHIVWNCPENLHARSQLLDSLRAQGRQSDFPVRDILASQ
FT                 DVPYLLCLYRFLKSIKVHL"
XX
SQ   Sequence 5624 BP; 1736 A; 1314 C; 1091 G; 1483 T; 0 other;
     cagtcggtat ctgatcgagg tacaagcaag acgtgtttgt tttcgctaga gcaccgaagc        60
     ttctaatcgt tcaacggatc aagggatcca ccgccgactt ctcgaaggtt gaccttacga       120
     gtgcgtacgt gacacgcgtg acagttcgtg aacgtgaata gtgcgtgtaa gccaattatc       180
     gccggtcaag ttcaccatca gcagccgaac cacaaaggca accctccaaa ccgcgaagcg       240
     tgttttggag ttttcgaaaa cgtttacaca aggcattgtc taaccgcgag agctagacaa       300
     aggagcacca ccgaatacaa tagcaaacgg acggtttgtt tcatcctcat caactcggcg       360
     tggcaaaatc tagagttaag tagaaaatca tctcccccct ccccccatgt ctgggggcga       420
     aggcggcatg gaaagcgatg gcgaagatga cgaggcttcc aatgtgcgca caaagatcta       480
     ccctaatggc tcaacagggc cgtttattgt cttctttcgg cccaaattga aacccctaaa       540
     cctgatcagc atcacccgag atctaacgag aaagttttct ggcgtatccg aaataaaacg       600
     tgtccatgct aacaagatcc gcgtagttgt gaataacatc tctcacgcca atgaaattgt       660
     cacctgcgag cttttcacgc tcgaatatcg agtttacatc ccttcacgca tcgttgagtg       720
     tgatggtgtt gtcacagaag agggcttaac cctagatgag ctgtatgagt gccgtggtta       780
     cttcagaaac cctgccgtga accccgtgaa gatcattgag gttaaacaac tgttctcctc       840
     ctccacacag gatggcaaaa cggtttactc cccttcgaac tctttccgag tgacctttga       900
     aggatccgct ctgccaaaat acattgagat agacaaggct cgtctacctg ttcgactttt       960
     tgtccccaag gtaatgaact gccaaaaatg caaacaactc ggccatacca cagcttactg      1020
     ttgcaacaag gctagatgca tcaaatgcgg tgaagagcac gatgatagta gctgtacgca      1080
     agctgctacc aagtgcctct actgcgacga ggacgccctt cacaaactct cggattgtcc      1140
     gacgtataag cagcgtcagg agaaacttaa gctttctctg aagcaacgat cgaatcgtac      1200
     ttttgcggaa atgctcaaac aagccaccga accactcaat tctggaaaca tctacaatat      1260
     actgccttcc gacgagacgg tcgccgactc gatcaatgcg ggcgcgtcaa cgtccgggac      1320
     gggtaactcg aggaaaagga acaatggatc accaagcatc cgccgaaaag aaataaagct      1380
     atccccacaa caagacagga tccctaattt tcagccaact ccccctggaa tcaacccccc      1440
     cggtttcccc ccattgccaa ggcccccacc tctgaccccc aaaccaaatc ctaacaaacc      1500
     taagcaagga ttaatcggtt tcacagtgtt gattaaccaa attctcgatg cgctccagat      1560
     ttccaccggt gttcgaaccg tggtaatcac tctgatccct ttcgttcgga catttttgat      1620
     caaattatct gaacaatggc cccttatttc aacaatcata tccttcgatg gataattcaa      1680
     cgtcgaagat gaatgaagaa atttctgttc tccagtggaa ctgcaggagc attgttccaa      1740
     aattagattc tcttaaaata ttagctcacg aaactaaatg tgaagtattt gctctctgtg      1800
     agacatggct tccacccaac gatgatggtc tgaattttcc caattttaat atcattacca      1860
     aaaatagaga cgactcctac ggaggggttt tgttaggcat aagacacggt ttaacattcc      1920
     aaagattgaa tcttccttct cagcctggaa ttgaagtagt tgcgattcag gttcaaatta      1980
     agaataaatg tttttcaata gcttctgtat atatcccgcc caaaacaagt gttaatcgtc      2040
     aacagttaaa aaacatcgtt gaaatgatgc ctgagccaag acttattctc ggcgacttca      2100
     attctcatgg gacaggatgg ggtgaattgt acgacgacaa tcgagcaaat cttatatatg      2160
     acttatgcga tgaatttaat ctaactatta agaacagtgg tgaaataact cgaattgcta      2220
     gacctcctgc aagggaaagt agattggatt tgtcaatttg ctcaagaaca ctctcaatag      2280
     attgcacctg gaacgtaatt caagatcccc atggtagcga tcaccttcct attttgattt      2340
     caattgcgac aggaaatcaa cctgtagaac cagtcagcta tacatacgat cttacgaaaa      2400
     atatagattg gaaaagatat gctctcatta tcaccgaggc gattgaatca atagatcctc      2460
     ttacccccca agaagaatac accttccttg caaatctcat ccacagtagc gcgatccaag      2520
     ctcaaacaaa accaatacca tcagcttctt cccgaatgcg acctccatct ttatggtggg      2580
     acaaggagtg ctcggaagtg tactctgaga aatcaaattc tttcaaaatt tacagacgaa      2640
     cgggtcaaat tgagtcttac gaacagtacc tccttttgga gattaagttc caaaatttag      2700
     taaaatgtaa aaaacgaaac tattggcgaa cgtttgttga tgggctttca cgcgaaacct      2760
     ccatgcgtac tctttggact acagcaagaa gaatgagaaa ccgagctccc aaaaacgcta      2820
     gtgaagagta ttctgatcgg tggttgcata attttgccag aaaagtgtgc cccgactcca      2880
     cgattcccaa acagaaaagg tattcgaatg atcttgtatt cccggaacta tcatccgcgt      2940
     tctcgatgat agaattctcg gtcgctctcc tttcatgcaa taacactgcc tctggaatgg      3000
     atggaattaa atttaatctc ctgaaaaatt tgccttccgt tgcaaaatgt cgactattaa      3060
     acttattcaa tattttcctt gaacaaaaca tcgtcccaga agtctggaga caagtcagag      3120
     ttatagctat tcaaaaaccg ggtaagccgg ccaccgatca ccattcatat aggcccattt      3180
     gtatgctatc gtgcgtgcga aagttattgg aaaaaatgat acttttcaga ttggataaat      3240
     ggatggaatc aaacggatta ttatcagata ctcagtttgg atttcgtagg ggcaagggaa      3300
     cgcaggattg tttagcgctg ctttcaaccg aaattcaact agctttcgct aaaaaagaac      3360
     aaatggcttc aattttctta gatgtaaagg gagcatttga ttcagtgtgc atcgaggtgc      3420
     tagcagataa actccacaaa agtggactcc cacctttatt gaacaatttt ttgtataact      3480
     tactctcgga aaaacacatg aatttcattc atggtaacgt gacaatcaca agatctagct      3540
     ttatgggcct tcctcaagga tcatgtttaa gccctctctt gtacaatttc tatgtaaatg      3600
     caattgactc ttgcctcgat aacgggtgca caataagaca attggcagat gattgcgttg      3660
     tatcagttac tggtcagtcg gccaaccatc tttctgaacc tctgcagaac actttaaaca      3720
     atttatctcg ctgggctatg gaattaggaa tcgagttctc aactgagaaa acggaaatgg      3780
     tcgtcttctc cagaaagcac aaccccccct cactgaagct gtacctactg ggaaaactta      3840
     taatacagtc cctggttttc aaatatctcg gtatttggtt tgactcgaaa ggtacttggg      3900
     cttgtcaaat aagatacctg aaacagaaat gccaacagag aataaacttc ctccgaacaa      3960
     tcacgggtac gtggtggggc gcacatccca cggacctcat taggctatac caaacgacga      4020
     tacgttcagt attggaatat ggatgttttt gctttcaatc cgccgcgaaa atccacatga      4080
     tcaaacttga aagaatacag tatcgttgtc tgcgcattgc cttaggatgc atgcactcaa      4140
     ctcatacgct gagcctagag gtacttgcag gcgttcttcc gctgaaaacc agattgtatc      4200
     agctcgctca cagaacgttg attcgttgtg agattaggaa tccattagtg atccagaact      4260
     tcgatcttct tctcgacaaa aatcctcaga ctaggtttat gactatctat cacaaccaca      4320
     taaccaagga aatctcacct tcaaacttta ctcccaaccg cagcacaata agcagcacgc      4380
     ataacccatc agttttattt gatttatcta tgcaacaaga aatcaagatg ataccagcaa      4440
     gtcaactttc gcaattagta ccgcatattt ttttgtctaa atataaccat attaaggcgg      4500
     aaaacatgtt ctacacagac ggatcgctaa tcgaagggtc cacaggcttc ggggtattta      4560
     atacgaaagt aagtgccttc cacaaacttc aaaatcctgc tacagtatac gtagcagaac      4620
     aagctgcaat tcattatgca ctagggatca ttaacctgca gccacaagat cactactaca      4680
     tattttctga cagccttagt acaattgagg ctctccggtc gttgaaatca cccaattcct      4740
     cgtcgttctt ttttcataaa attaaagaaa tcatgagttt actggtagag aaaaaataca      4800
     aaattactct tgtttggatc ccttctcatt gttctgtatt aggaaatgag aaagcggact      4860
     cgttggcaaa gcaaggtgcc ttggaaggat ccacttacga tcgtattatc acttatgacg      4920
     aatattttac aatccctcgt caagaatctc ttgtaagctg gcaaaccaaa tgggacaaaa      4980
     gcgaaatggg tcgatggctt tactctatca ggccaaaagt ttctacaact tcgtggttca      5040
     aacacatgaa tgttgaaagg gatttcatac gcgtaatatc aagattaatg tcaaaccact      5100
     acctactcaa cgctcactta tatcggatta acttaaaaga tgacaatctc tgcggttgtg      5160
     gagagggtta tcacgatatc gaacatattg tttggaactg tccagagaac cttcacgcta      5220
     gatctcaact cttagactcc cttagggccc aaggaagaca atcagacttc cctgttcgtg      5280
     acattttggc aagtcaagat gtgccatatc ttctctgctt gtaccgcttt ctaaagtcaa      5340
     ttaaagtgca cctgtaacag catcaatctc gcaagcatcg ccaccctgca acctagcaat      5400
     agtaacatct gataaaaact agaaccttag cccgcacaga agcaaaagtc cgtccttaaa      5460
     cataatgtat tattaacctc gaaacagccg cgagtattcg gctttccccc tttactaacc      5520
     ctagctttaa gtaattatgt aaaaatgata tccggctccg taaaactttg gtagatgagc      5580
     ctaaataaat aaagacagtt ataaaaaaaa aaaaaaaaaa aaaa                       5624
//
ID   I-4_DAn     repbase;    DNA;    INV; 3151 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3151
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 381-381 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2990
FT                 /product="I-4_DAn_1p"
FT                 /note="reverse transcriptase and ribonulcease H."
FT                 /translation="KINQANWDKFATHPNNNNNLYPPSTNINKETAQINKI
FT                 IMKSAHLAIPQTLPHRHTHTVPWWNKDLADLQEKKKQTWKALKRDTTQENI
FT                 IKYRKTNALFKRAVKIRKKEATSKFTSTIQPNTPTTKIWNNIRRFCGLNPV
FT                 KQIHCITNNNVTTNDKQKIANLLAQHWSQLSKDSNFSQEFTSHKYNTTTLN
FT                 HIPSKSAMEIDKPITKLELTIALRSLKGITPGINRISYPMLKNSPLAIQNR
FT                 ILSHFNHIFENYIPQSYKTSLIIPILKAQKDKTDIASYRPISLNCCVGKTL
FT                 DKIIANRLWWYLNSNKLLHPHQYGFKKGKSTSDNLLYADHIITKSLNTRKH
FT                 TSLISLDFARAFDRVGIHSIVDQLIEWKCSHKIINYIINFTKNRKIAVRIG
FT                 SSISNFYPLENGIPQGSPISVVLFLIAFNKLANILTIYKEIKFSAYADDFL
FT                 LLVNLKNQKNTTINLTHIFRKIYDWGSYSGASLSQTKCQHLHICRKHRCNC
FT                 TITTQNSSIKNVTSLKILGLTINNRYNWSSHINSLIPSLSNKHNIIKCLAS
FT                 HKFNCNTSTLLNITKSILISKIDYALHIYGYTPKNFLNKLKTTLNAALRTV
FT                 LGAFRTTPTHNLLYEANIPSIEQQRDHLTTKLFTNLTRSKDTPLHKHIQPK
FT                 TNNKKWTSTLERTIENCQLHNIPFKPTKLYKTKPPWQLPQNIINTSLHNYK
FT                 KTNTSSDTFQKLFFEIKETYKNHTFIYTDGSKINSNTAFAVTTETEVLRYG
FT                 ILPPCSSILTGEMIGILEAIKISTTKRGKSVICSDSLGAIEAIQNPLNLNK
FT                 YPTYIRSLLQTKQPKIKILWIPGHSNIKGNDLADRTAREATKMPLIYTPNE
FT                 NITDINKMLKNILIQEKETLINKCNTWYKNINTNNTHISALSKIQQEEISR
FT                 IDQIKFIRLRLGHTSLTHKHLLDPNTQRNCYRCQSSTPTNMEHILDSCPAI
FT                 SQNKQNLLKNRPATEYLKNPTAENIKVIIKFLKETNLYNEI"
XX
SQ   Sequence 3151 BP; 1311 A; 813 C; 359 G; 668 T; 0 other;
     ttaaaataaa ccaagcaaat tgggacaaat ttgcaaccca ccccaacaac aacaataacc        60
     tatatccccc ctcaaccaac ataaacaaag aaactgccca aatcaacaaa attattatga       120
     aaagtgcaca ccttgcaata ccacaaacct taccccacag acacacacac acagttcctt       180
     ggtggaacaa agacctagca gacctgcagg aaaagaaaaa acaaacctgg aaggcactga       240
     aaagagacac aacccaagaa aatatcatta aataccggaa aacaaacgca ctttttaaaa       300
     gagcagtcaa aataagaaaa aaagaagcta cgtccaaatt tacatcaacc attcaaccta       360
     acacaccaac aactaaaata tggaacaata ttcgacgatt ctgcgggcta aaccctgtaa       420
     aacaaataca ctgcataacc aacaataacg ttacaactaa cgacaaacaa aaaatagcca       480
     acctactcgc ccagcactgg tcccaactgt ccaaggactc aaatttcagc caagaattca       540
     catcccacaa gtacaacaca acaacactca accacatccc gtccaaatca gctatggaaa       600
     ttgataaacc cataaccaaa ttagaactaa cgattgctct ccgatccctc aaaggaataa       660
     ccccaggcat caatagaatc tcatacccca tgttaaaaaa tagcccacta gcaatacaaa       720
     atagaatact ttcccatttc aaccatatct ttgaaaacta tatacctcaa tcctacaaaa       780
     ccagcctaat catacctata ttaaaagccc agaaggataa aaccgacata gcttcataca       840
     gacccatatc actcaactgc tgcgtgggga aaactctgga caaaataatt gcaaacagac       900
     tatggtggta cctaaacagc aataaactcc tacacccaca ccaatatggg ttcaaaaaag       960
     gtaaatcgac ctcagataat ctgctctatg cagatcacat cattacgaag tcgcttaata      1020
     ccaggaaaca tacctcactc atctctcttg actttgcaag agcttttgac cgagtaggta      1080
     tccactcaat agtcgatcaa ctaatcgaat ggaaatgtag ccacaaaata ataaactaca      1140
     taataaattt caccaaaaat agaaagatag ctgtccgaat agggtcaagt atctcaaact      1200
     tctacccctt ggaaaatgga attccacaag gatcgccaat ctcggtagtc ctattcttaa      1260
     tagcattcaa taaacttgcc aatatcctca caatatacaa agaaattaaa ttcagcgcat      1320
     acgccgacga ctttctttta ttagtcaatc taaaaaatca aaaaaacact accataaatc      1380
     ttacccatat ttttaggaaa atatatgatt ggggaagcta ctcaggcgca tctctatctc      1440
     aaacaaaatg ccaacaccta cacatttgta gaaaacacag atgcaactgc acaatcacaa      1500
     cacaaaactc tagcataaaa aacgtaacat cactcaaaat acttggacta accataaaca      1560
     ataggtacaa ctggagctca cacataaatt ctcttatacc atctctgtcc aataaacata      1620
     acattattaa atgcctagcc agccacaaat ttaactgcaa cacaagcacc ctacttaaca      1680
     ttactaaatc aatactcata tctaaaatag actacgctct tcacatatat ggatacaccc      1740
     cgaaaaactt tctaaacaaa ttaaaaacca cattaaacgc agcactcaga acagtcctag      1800
     gcgcctttcg caccacacca acacacaacc tactctatga ggccaatatt ccatcaatcg      1860
     agcaacaacg cgaccacctc acaaccaaac tgttcacaaa ccttacccgc tccaaagaca      1920
     caccattaca caagcacatc caaccaaaaa ccaacaacaa aaaatggacc tcaacactag      1980
     aacgaactat agagaactgt caactccata acatcccatt caaacctacg aaactataca      2040
     agaccaaacc accatggcaa ctaccccaaa acataatcaa cacctctctg cacaactaca      2100
     aaaaaacaaa cacgtcatct gacacgttcc agaaactttt ctttgaaatc aaagaaacct      2160
     acaaaaacca cacatttatc tacacggacg gatctaaaat aaattcaaac actgccttcg      2220
     ctgtaaccac tgaaacagaa gttttgcggt acggaattct accgccctgc tcatccatcc      2280
     taacaggaga aatgatcgga atcctcgaag ccatcaagat ctcaaccacc aaaagaggga      2340
     aatcggtaat ctgctctgac tcccttggag cgatcgaagc catccaaaac ccactaaact      2400
     taaacaaata ccctacatat attcgatcac tactacaaac taaacaacca aaaataaaaa      2460
     tattatggat cccaggacac tccaatatta aaggaaatga tcttgcagat agaactgcaa      2520
     gagaggcaac aaaaatgcca cttatataca cgcctaatga aaacataacg gacattaata      2580
     aaatgctaaa aaatatactt atacaagaaa aagaaacttt aataaataaa tgcaacacat      2640
     ggtacaaaaa cattaacact aacaacactc acatttcagc actttctaaa atacaacaag      2700
     aagaaatcag cagaattgac caaattaaat ttataagact tcggctagga catacaagct      2760
     taacacacaa gcacctcctc gaccccaaca cccaacgcaa ctgctatcgc tgtcaatcat      2820
     caacccccac aaacatggaa cacatcttag attcctgccc agcaatctct cagaacaagc      2880
     aaaatctact aaaaaatcgg ccagccactg agtatcttaa gaacccaaca gcagaaaata      2940
     ttaaagtaat catcaaattc ctaaaagaaa ccaatttata caacgaaatt taaaattaaa      3000
     ataaatatac tgttaactta gctaattata aaaataaata aataattaaa atacgtagtc      3060
     gaaggcctcg tagctagcac tacaccccaa actgttagtc atagttttgt aaactgtact      3120
     atcatatcca ataattaaat aaataaatat t                                     3151
//
ID   I-4_DBi     repbase;    DNA;    INV; 5883 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5883
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 928-928 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(154..387,297..755,515..1075)
FT                 /product="I-4_DBi_1p"
FT                 /translation="MTRPPDIXQTTPREKAPFQTPKFIVIKRKDNIASFEK
FT                 VSPFIIKXVIDYTCCGEVXSVSKTKAXTLLVKTKTYSKLNGLYMLRGSXVS
FT                 FKNQSXYSSCQNXDLLQAQWLMKLTKFHDFEVEASEHKTLNFSKGVIYSND
FT                 LRYINNEDILNELKTQKKXDXTFLDLXNAGTAXIXPXXPAITRKLAQTALK
FT                 FTPPTTKTARSLNSASTANTSTTLIIAHWTISAQHLLNKKKTQDAKKIRXH
FT                 IPRPXKCRNCPNXXTXXCNNEKTCSNCSEVHSXDDEDCTKPKFCINCKHLD
FT                 NPHHSPLDNKCPTFIKQKEIMAIKTIENVDFKSASKIYIQRHFHKATPYSK
FT                 LQHNHQILSPQFWINRILVRSRHTTTSWNLPHKLQARTTSKWIQQNLSEPV
FT                 QTLQPQTALSEASTKKKPTLWLYP"
FT   CDS           join(1223..1900,1867..4803,4757..5734)
FT                 /product="I-4_DBi_2p"
FT                 /note="apurinic-like endonuclease, 2 reverse
FT                 transcriptases and ribonuclease H."
FT                 /translation="MLKXIQWNIHGYRNNYIELQTLIKTFNPLILALQETH
FT                 ITNFNSLPIPINYTLYQQCCTNSYGGAALLXHNSISQRQIXITQDFEATGV
FT                 SIDTKLKLNIISVYISPTKSFNRSNLENVLCFDNTPTLVLGDFNSWHPYWG
FT                 SPSPNTRGNIIAKFLDRSDYILLNDKSPTHFSTHNSFTHIDLSFSSSTIAP
FT                 EFLWETIDDLYGSDHLPILISMNLNASPSSYTSKGXCLPLILHLQRTLAFN
FT                 LKKANWEAYKKSFRINSTDKPPSENVNKEAALLRKIIIHSAHQSIPQNSTF
FT                 QFPRTVPWWNQNLSVLKNAKSSKWSILKRNITTYNIIEYKRANAKLKKAIR
FT                 EAKRISIFNFTSDISPFSSPARTWSNIRRLCGLYPTKHIHCINDPSFPTPR
FT                 TSQSEIANSFGLAWSKEADDGNFSPTFRTNKFLLNHTLDYQPSKTALEIEK
FT                 DISFIEFSSALNSLKGKTPGLDRISYIMINNSPISFKHRVLNHFNSILDSS
FT                 IPQAYKHSLVLPILKPQKPKTDIKSYRPISLNSCLAKTLDKIIAKRLWWFV
FT                 LNNNLINSNQIGFRRGRSVIDSLLLVDHIATRSLSLKKHVTLISLDFNKAF
FT                 DKIGIHSVINQLKEWKIGKRILNYVLNFMTNRKIIIKSGNNLSSLFPLNNG
FT                 IPQGSPISVILFLIAYNTLSHIISLHKEIKLTAYADDFHLIIEHNKQKNPT
FT                 TNLQTLFTQIDDWCTYSGSILSKEKCQVLHICRKHNCSAKIRTGDTNLPST
FT                 NSLRILGLTINNKYTWNTHITELKTELSKTLKIIKHSLVLPILKPQKPKTD
FT                 IKSYRPISLNSCLAKTLDKIIAKRLWWFVLNNNLINSNQIGFRRGRSVIDS
FT                 LLLVDHIATRSLSLKKHVTLISLDFNKAFDKIGIHSVINQLKEWKIGKRIL
FT                 NYVLNFMTNRKIIIKSGNNLSSLFPLNNGIPQGSPISVILFLIAYNTLSHI
FT                 ISLHKEIKLTAYADDFHLIIEHNKQKNPTTNLQTLFTQIDDWCTYSGSILS
FT                 KEKCQVLHICRKHNCSAKIRTGDTNLPSTNSLRILGLTINNKYTWNTHITK
FT                 LKTELSKTLNIIKHLSSLKYNSNTTTLINTIKSILISKIDYCLPFYGYCPK
FT                 SKLNCLKTTINAALRAALGAYRTTPVNNLLLETKTNTLEQKRNFLTAKLSK
FT                 NILFAHGTHITKLIKPHKRKYRYPSTIDRIISMQPPIPPRFSYPNQSACNH
FT                 LSLPVSPIRISNCKKFNMTTIHKAIDTSLSSHNKQNTPATTYQQLFRSLQS
FT                 SYPQHKFVYTDGSKADGISGFSITDENNLLKSGLLPMYSSSYTSEIIAILE
FT                 ATKLCQGKSGKHAICTDSLSSLNSIKTLNKHSYYITLIRNIITKNFPKISL
FT                 IWIPSHIGIKGNETADSFAKLSLQSPLIYTPNYNFTDIARHLKQCLDNELI
FT                 KTLETASPWYQLVKPLTFPHKHEMNRRQQIIINRIRLGHTKFTNAHYIDKN
FT                 LSSICPLCNISPISLTHIITSCPALTLQRTASFNSQNPFHIISNPTLINTQ
FT                 KILLFLNNSNILYKI"
XX
SQ   Sequence 5883 BP; 2181 A; 1559 C; 692 G; 1423 T; 28 other;
     ccasgcaagt gtaatctgca actattacct accaattttg tcaaamcaaa taagmcctca        60
     aagcaaackc gccaactaaa gcaaaaacaa ttactgcatc tggacagtta ctaaagtgca       120
     agtgcatcgg gcagcagccc aacaacaaca acmatgacac gwccaccaga cataaascaa       180
     accacaccgc gagaaaaagc acctttccaa acacccaaat tcatcgtcat taaaagaaaa       240
     gacaacatcg catcctttga aaaagttagt ccwttcatta tcaaaaamgt tattgactat       300
     acatgctgcg gggaagtamc gtcagtttca aaaaccaaag cakgtactct tcttgtcaaa       360
     acmaagacct actccaagct caatggctaa tgaaactcac caaattccac gactttgaag       420
     ttgaagcatc tgaacacaaa acacttaact tttcaaaagg agtcatctat tccaatgacc       480
     tccgatacat aaacaatgaa gatattctca atgaactcaa gacgcaaaaa aaatwcgacm       540
     acacattcct cgacctcwta aatgccggaa ctgcccwaat cmsmccacmm awkcctgcaa       600
     taacgagaaa acttgctcaa actgctctga agttcactcc sccgacgacg aagactgcac       660
     gaagcctaaa ttctgcatca actgcaaaca cctcgacaac cctcatcata gcccattgga       720
     caataagtgc ccaacattta ttaaacaaaa agaaataatg gctataaaaa caatagaaaa       780
     tgttgacttc aaaagcgcat caaaaatata catccaacgt cacttccaca aggccactcc       840
     ttactccaag ttgcagcaca accatcaaat tctatcgccc cagttctgga taaatcgaat       900
     actcgtgaga tcacgacata cgacgacatc atggaaccta ccccacaaac tccaagcgag       960
     gacgacatcg aaatggatac aacagaatct atcagaacca gtacaaacac tacaacctca      1020
     gaccgcactc tcagaagctt caacaaagaa aaaaccaacc ctctggctat acccttaaag      1080
     gctaaaagca aagcagacaa atcgaaaaca gtaaatacaa tccaactaaa acactcgaag      1140
     taacccaaac aacactgcca aggaacttta ttaattaatc actcaaatta gtactaagta      1200
     atacaccttc tctttacatt taatgcttaa aawcattcaa tggaacatcc atggatatag      1260
     aaataactac attgaactcc aaaccctgat caagaccttt aaccccctaa ttcttgccct      1320
     acaagaaaca cacataacca actttaactc tctacccatt cccattaact acacactcta      1380
     ccaacaatgc tgcaccaact cttacggggg cgcagctcta ctgwtacata actcaatatc      1440
     tcaaagacaa atctsaatca cccaagactt cgaagcaact ggagtctcaa tagatacaaa      1500
     acttaaacta aacataatat cagtctacat ttcaccaact aagtccttta acagaagtaa      1560
     cctagaaaac gtcctctgct tcgacaacac acccacttta gtcctcggag actttaatag      1620
     ttggcacccc tactggggct ctcctagccc taataccaga ggcaatatta ttgccaaatt      1680
     cctagaccgt tcagattaca ttttattaaa cgacaaaagc cccacccact tctccactca      1740
     caactctttc acacatatag acctatcctt ttcttcatcc actatagccc cagaatttct      1800
     ctgggaaaca atagacgacc tctacggaag tgatcacctc cctatcttaa tctcaatgaa      1860
     ccttaatgcc tccccctcat cctacacctc caaaggacsc tagcctttaa cttaaagaaa      1920
     gcaaactggg aagcatacaa aaaatctttt cgtatcaatt ctactgacaa gccaccgagc      1980
     gaaaatgtca ataaagaagc agctttgtta agaaaaatta ttatccacag cgcgcaccaa      2040
     tcaatccccc agaactctac ttttcaattc cctagaacag tcccgtggtg gaatcaaaac      2100
     ttatcagttt tgaagaatgc caaatcgtct aaatggtcaa tactaaaacg taacattact      2160
     acgtataata taatagaata caaaagagcc aacgctaaac taaagaaagc cattagagaa      2220
     gccaaacgaa tctctatttt taatttcaca tccgatatta gtcccttctc atctccagca      2280
     agaacatggt ccaacatcag acgcctttgc ggcctttacc ccacaaagca catacactgc      2340
     attaacgacc cttctttccc cacccccaga acatcccaaa gtgaaatcgc taactctttt      2400
     ggacttgcct ggtccaaaga agccgacgac ggtaactttt ctccaacttt tcgcactaat      2460
     aaattcctct taaaccacac attagactac caaccctcca aaactgcact agaaatagaa      2520
     aaggacattt cgttcatcga atttagcagc gcactcaact ccttgaaagg caaaactcca      2580
     ggattagatc gcatctcata cattatgatc aacaactccc ccatatcatt caaacacaga      2640
     gtccttaacc atttcaactc aatcctagat tcctcaatcc ctcaagccta caaacatagc      2700
     cttgtacttc ccatcctaaa accccaaaaa cccaaaacag acatcaaatc gtaccgcccg      2760
     atatccctaa attcatgcct agccaaaaca cttgataaga ttatcgcaaa gagactgtgg      2820
     tggtttgttt taaataacaa cctaatcaac agcaatcaga ttggatttag aaggggaaga      2880
     tctgttatag acagtctact cttagtagac cacatagcaa caagatccct ttccctcaag      2940
     aagcacgtca cattgatctc tcttgatttc aacaaggcat ttgacaaaat aggcatccac      3000
     tccgtaatta accagctgaa ggaatggaaa ataggcaaac gcatattaaa ttatgtactt      3060
     aactttatga caaacagaaa aataatcata aaatccggca acaacctttc aagccttttc      3120
     ccacttaaca atggcatacc ccaggggtct ccaatctcag taattctttt tctcatagct      3180
     tacaacactc tctcccatat tatctcctta cacaaagaaa taaaactaac agcatacgcc      3240
     gatgatttcc atcttataat cgaacacaat aaacaaaaaa accccactac caacctccaa      3300
     accctgttta ctcaaataga cgactggtgt acgtactctg gatcaattct atcaaaagaa      3360
     aaatgtcaag tccttcacat atgcagaaaa cataactgct ctgccaagat ccgtacaggc      3420
     gacacaaatc ttcccagtac aaactccctc agaatactag gacttactat aaacaacaaa      3480
     tacacctgga acacccatat tacagaatta aaaacagaac tatcaaaaac tctcaagatt      3540
     attaaacata gccttgtact tcccatccta aaaccccaaa aacccaaaac agacatcaaa      3600
     tcgtaccgcc cgatatccct aaattcatgc ctagccaaaa cacttgataa gattatcgca      3660
     aagagactgt ggtggtttgt tttaaataac aacctaatca acagcaatca gattggattt      3720
     agaaggggaa gatctgttat agacagtcta ctcttagtag accacatagc aacaagatcc      3780
     ctttccctca agaagcacgt cacattgatc tctcttgatt tcaacaaggc atttgacaaa      3840
     ataggcatcc actccgtaat taaccagctg aaggaatgga aaataggcaa acgcatatta      3900
     aattatgtac ttaactttat gacaaacaga aaaataatca taaaatccgg caacaacctt      3960
     tcaagccttt tcccacttaa caatggcata ccccaggggt ctccaatctc agtaattctt      4020
     tttctcatag cttacaacac tctctcccat attatctcct tacacaaaga aataaaacta      4080
     acagcatacg ccgatgattt ccatcttata atcgaacaca ataaacaaaa aaaccccact      4140
     accaacctcc aaaccctgtt tactcaaata gacgactggt gtacgtactc tggatcaatt      4200
     ctatcaaaag aaaaatgtca agtccttcac atatgcagaa aacataactg ctctgccaag      4260
     atccgtacag gcgacacaaa tcttcccagt acaaactccc tcagaatact aggacttact      4320
     attaacaaca aatacacctg gaacacccat attacaaaat taaaaacaga actatcaaaa      4380
     actctaaata ttattaaaca tctctcttcc cttaaatata acagtaacac aaccactctt      4440
     atcaatacta ttaaatctat cctcatttct aaaatcgatt attgcctgcc tttctacgga      4500
     tattgtccca aatctaaatt aaactgctta aaaacaacaa taaacgcagc tctaagagca      4560
     gccttaggag cctaccgaac cacaccagta aacaacttac tactagaaac taaaacaaac      4620
     acattagaac aaaaacgaaa cttccttaca gccaaattaa gtaaaaatat ccttttcgcc      4680
     cacggcaccc atataactaa actaataaag ccacataaaa gaaaatacag ataccctagt      4740
     accatagaca gaataatcag catgcaacca cctatccctc cccgtttctc ctatccgaat      4800
     cagtaactgt aaaaaattta atatgactac catacataaa gctatcgaca ccagtctgtc      4860
     atctcataat aaacaaaata cccctgcaac aacttaccaa caacttttca ggtccttaca      4920
     atcctcatac ccacaacaca aatttgtata tactgacggt tctaaggctg atggtatatc      4980
     tggattcagt attactgatg aaaataacct tttaaaatcc ggtctactac caatgtactc      5040
     ttcctcctat acgagcgaga tcattgccat cctagaagcc acaaaacttt gtcaaggaaa      5100
     gtctggaaaa cacgcaatct gcaccgactc cctctcctcc cttaactcga ttaaaaccct      5160
     taataaacac tcctactaca ttacattaat aagaaacatc ataaccaaaa acttcccaaa      5220
     aataagcctt atttggattc ctagccacat aggaataaaa ggcaacgaaa ctgctgactc      5280
     atttgccaaa cttagccttc aatcccccct tatatacacc cctaactaca attttactga      5340
     catcgctcgc cacctaaaac aatgcttaga taatgaactg ataaaaacct tggaaacagc      5400
     atctccttgg taccaacttg taaaacccct aacattccca cacaaacacg aaatgaatag      5460
     aagacaacaa attattatta acagaatacg acttggacac accaagttca ccaatgcgca      5520
     ttacattgat aaaaaccttt cctctatctg ccccctgtgc aacatcagcc caataagcct      5580
     aacccatatt attacctcat gccccgccct tactctccaa agaactgcat cgttcaactc      5640
     ccaaaaccct ttccacatta tatcaaatcc tactttaatc aatacccaga aaatcttact      5700
     ctttcttaat aattcgaaca tattatataa gatataataa attgtaaaat ataatcatca      5760
     ctactaaatt accataagcg agcttaaggc cttttgttgc tatagctcta gaataaaccc      5820
     actgttagct taaagtttta actataagtt agcattagat aataataata ataataataa      5880
     taa                                                                    5883
//
ID   I-4_DBp     repbase;    DNA;    INV; 5399 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5399
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 704-704 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           724..1446
FT                 /product="I-4_DBp_1p"
FT                 /translation="MPKMPTIWTPDPNLQKPPELCKNCSETTHKKNESCNN
FT                 EKNCINCKNLFDADSKHSPLDRSCPSFIKQKELITIKTIQKVDHKTALEIY
FT                 YSRRNQQLSTSFASIVSKQHTDKTITNKITTPTPQYTNQNKDTPTSQKQHQ
FT                 RKQTSYHDLPNDHHTPTPIANITTPLTSPAHQNTDISNMDIDLPSTSKDNI
FT                 ACERTQDLKLRIFQKDKNKTLATNLKHTKTNQPKSQKKTNNTNNISDSEST
FT                 "
FT   CDS           join(1541..4495,4330..5235)
FT                 /product="I-4_DBp_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MKIIQWNINGYLNNYCELQTIIKKHAPLIISLQETHI
FT                 KFTNNIPIPINYTLISKNTSSSHGGVGLLAHKSLQAREIILRDDFDAVCIE
FT                 LNSKLKFRIISAYIAPNKSFSLQNLQAVLDTSHIPTLITGDFNGWHKNWGS
FT                 NQNNARGKTLDKFITQSNYILLNDMSPTHFSTHNTLTNVDLTFSSPILQID
FT                 SSWHTEDNLFGSDHFPIVINLFTSNTTSLQVTPRKPSFLTDKANWPKFCKL
FT                 TEVYSAQRKPSTNINKEAATIHTIIISSAHKAIPQTHPTKKPQNVPWWNSK
FT                 LSQLRDDKMKKWNELKRNISTENILKYKKANALFRLTLKQEKKRSINNFTT
FT                 QISPETPPKTIWSNIRRFCGLNPQKHIHCIFNPTTNQNTTHKLEIADLFCK
FT                 HFSEISSDXNFNTSFINQKQTSISNSHNLSYTPCKRAKEIEKPITSIEFSA
FT                 ALNTLKGNTPGLDRINYAMIKNIDITTKNRIISLQNSILNNYIPQTYKNSL
FT                 IVPILKPNSDKTNLNSYRPISLNSCLSKILDKIIAKRLWWFVLNDKLIQNS
FT                 QTGFRKGKSAMDSLLLVDHLLARAISRRNHTSIISLDFAKAFDRIGIHSIL
FT                 NQLAIWKTGPKITNYIKNYMTNRKIIVRINSDLSSFQSIQNGIPQGSPLSV
FT                 ILFVIAYNKLAEKLTLHRNISLSAYADDFNLIVKLKNRKNINTNLNPIITT
FT                 ILDWTEYSGAQLSTTKCKHLHVCRKHNCNCTLSTGNIQIQNVTSLKILGVH
FT                 FNNKYRWKTHTEQLSHNLKQSINIIKCLSSPKFNCNTSTLLNVTKATITAK
FT                 ADYGLPIYGYCPQTNLRKVKATINTAFRTALGAIRTTPINNILYEARADTL
FT                 EDRRDLLTTKIIKSLMNAKNSPLIKILKSYRPPKRPQYKSTIDRIIEKSEA
FT                 HNLPLKLTSQHSQTTPPWNTDILKIDTTLSTYNKKTQHHKLFGHYSQKSRP
FT                 KTITNSPTFIQMDLTQTQSPVSQSRTKQKSHNIKHVQQKNTTPQTFRTLFT
FT                 EIKTKDNHKFTYIYTDGSHANSITSLAITNETEVIKIGLLPHYSSVFSAEL
FT                 LAIIEGIELLKNKRGKFCICSDSLSAIDAIKNPNNSEHYTSHARNLLQKFK
FT                 SKFKLLWIPGHVGIPGNELADTLAKNATTQPLLTVENLNTKDIQKYIINTH
FT                 QEKTLSNITKTSTWYQSINQLQLNSYHITKNNHPAISRLDQIKITRLRLGH
FT                 TKLTHTHYIDPNHNNTCPFCNDTVTITHLLSTCNALNIQRQQMFQNTNPLE
FT                 ALSNPTPPNISTILQFLKNTNLYHRI"
XX
SQ   Sequence 5399 BP; 2227 A; 1450 C; 624 G; 1097 T; 1 other;
     tcagtttcac ttcaaacctc tttgagataa gacgtgtatt ctttgagctc cactagcaca        60
     aatccccaac aacaccaaca acgaacctca aggaaaaaag caaataagtg taattaaaca       120
     gaattcgaaa aaacaaaaca aacacataac acacgtgttc aagtgccggg cgccagccca       180
     ataaaaacca acaacaatgg ataaaccacc tgacataggt aatacatcca tataccacaa       240
     acgtctaggc gaaccaaaat atatagtcat aaacagaact gacaataagt ctctcgaaca       300
     tgtttcaccc ttcattatta aaaaagccat cgattttgca tgcggaggag aagtggagtc       360
     atgcaaaaat actcgagcgg gttatttgct ggttaaaact aagaacacct tacaggcaaa       420
     caagttactt agactgaaaa acattacaga catagaagta aaagctaccg aacacaaaac       480
     tctaaactcc tctaagggcg tcatatactg taatgaatta cgaaacatag acgaaacaga       540
     aatactcaac gaattaaaaa cacaaaaagt tactgaagtt cgcaaaattc taaaaaaaca       600
     aaaccaatca ttggtagaaa ctggattaat tataataact ttccaaaccc atacactccc       660
     agaatcccta aacgttggat acgaaaaagt tcgtctacgc ccatatattc cacgtccact       720
     aagatgccaa aaatgcctac gatttggaca cccgacccca acctgcaaaa gcccccagag       780
     ctttgcaaga actgctccga gacaacccac aagaagaacg agtcatgcaa caacgaaaaa       840
     aactgcatta actgcaaaaa ccttttcgat gcagattcaa aacatagccc actagaccgc       900
     agttgcccat catttataaa acaaaaagaa ctgataacaa taaaaactat acaaaaagtc       960
     gaccacaaaa cagcactaga aatttactac tctcgtcgca accaacagct cagcaccagc      1020
     tttgcatcta ttgtatccaa acagcacacc gacaaaacaa taacaaacaa aataacaaca      1080
     cccacacccc aatacacaaa ccaaaataaa gacacgccga catcacagaa acaacatcaa      1140
     agaaaacaaa catcatatca tgacctccct aatgaccatc acacacctac tccaattgca      1200
     aacatcacaa caccactaac ttcacccgct catcaaaata ctgatatctc caacatggat      1260
     atcgacctcc ccagcacttc aaaagacaac atagcatgcg aaaggaccca agacctaaaa      1320
     ctacgaattt ttcaaaagga caaaaataag acactagcga ccaacctaaa acataccaaa      1380
     actaaccaac caaaaagtca aaaaaaaaca aacaacacca ataacataag cgattctgaa      1440
     agcacttaac acttgtagca gcagttataa aagaacagag tacccatagt aaccaactaa      1500
     cccctcatca acgacaaaca actaatcttt aaaatcgacc atgaaaatta tacaatggaa      1560
     cattaacggc tatctaaaca actactgcga acttcaaaca atcattaaaa aacatgcacc      1620
     acttataata tccttacaag aaacacatat aaaattcact aataacattc ccatacccat      1680
     aaattacaca cttatttcaa aaaacacctc atcttcccac ggtggcgtag gtctcctagc      1740
     ccacaagtca ctacaagctc gagagataat ccttagagac gatttcgatg cagtatgcat      1800
     agaactgaac tccaaactta aattcagaat tatctcagca tacatagctc ctaacaaatc      1860
     attctcactg caaaaccttc aggccgtact agacacctca catataccca ccttgatcac      1920
     tggcgacttt aacggttggc acaaaaactg gggctcaaat caaaacaacg caagaggaaa      1980
     aacattagat aaattcataa ctcaatcaaa ctacatacta ctaaacgaca tgtcacctac      2040
     tcactttagc acacacaaca cactaacaaa cgtcgaccta accttcagca gcccaattct      2100
     ccaaatcgac agctcttggc acaccgaaga taatcttttt ggcagcgatc acttccccat      2160
     agtaatcaac cttttcacct ccaacacaac gagcctccaa gtcactccac gcaaaccatc      2220
     atttttaacc gacaaagcaa actggccaaa attctgcaag ctcactgaag tatactccgc      2280
     acagagaaaa ccaagcacaa acataaacaa ggaagccgca acaattcaca caatcatcat      2340
     ctccagcgct cataaggcaa taccccagac acaccctaca aaaaagcccc aaaatgtacc      2400
     atggtggaat agcaaactta gccaattgag agacgataaa atgaagaaat ggaacgaatt      2460
     aaaaagaaac atatctacag aaaacattct aaagtacaaa aaagctaacg ccctatttag      2520
     actaacatta aaacaagaaa agaaacgaag tataaacaat tttactacac aaatctcacc      2580
     cgaaacaccg ccaaaaacaa tctggagtaa catccgacgc ttttgcggac tcaacccgca      2640
     aaaacacata cactgcatat ttaacccaac cacaaatcaa aacaccaccc acaaattaga      2700
     aatcgcagac ttattttgca aacatttttc agaaatttca tccgacwtaa acttcaacac      2760
     atcattcata aaccaaaaac aaacttcaat cagtaactca cacaacctat cgtacactcc      2820
     ctgcaaaaga gcaaaagaaa tagaaaagcc cataacttca atagaattct cagcagcttt      2880
     aaacacacta aaaggaaata cacccggact ggacagaatt aactacgcaa tgatcaaaaa      2940
     catagatatt acaacaaaaa atagaattat aagcctacaa aactcaatcc tcaacaacta      3000
     tatcccacaa acctacaaaa atagcctaat agtaccaatt ttaaaaccaa actcagacaa      3060
     aaccaaccta aactcatacc gtccaatctc actaaactca tgcctttcaa aaattctgga      3120
     caaaattatt gccaaacgac tgtggtggtt tgtattaaac gacaaactca tccaaaacag      3180
     ccaaactggt ttccgaaaag gtaagtcagc tatggacagt ctactgctcg tagaccatct      3240
     attagcaaga gctatctcaa gaagaaacca tacctccatc atatccctag atttcgcaaa      3300
     agccttcgac agaattggaa tccactccat actcaaccaa cttgccattt ggaaaacagg      3360
     accaaaaata accaactaca taaaaaatta tatgacaaat agaaaaataa tagtacgtat      3420
     caactccgac ctttcttcct ttcaatccat ccaaaacggc atacctcaag gctctccact      3480
     ttccgtgatc ctctttgtta tagcatacaa caaactcgca gaaaaactca cccttcatcg      3540
     caatattagt ctaagcgcat atgcagatga ctttaacttg attgtaaaac taaaaaacag      3600
     aaaaaacata aacacaaacc tcaaccccat tattactacc atactagatt ggaccgagta      3660
     ctcaggcgcc cagctttcaa ccacaaaatg caaacacttg cacgtttgca gaaaacacaa      3720
     ctgcaactgc accctatcca ctggtaacat acaaatacaa aacgtaacat cacttaaaat      3780
     actcggcgta catttcaata acaaatacag gtggaaaaca cacacagaac aactctcaca      3840
     caacctcaaa caatcaataa acataataaa atgcctctca agcccaaaat tcaactgcaa      3900
     cacatccaca cttctaaacg tcacaaaagc aactatcacc gcaaaagcag actacggtct      3960
     cccaatctac ggatattgcc cacaaacaaa cctacggaag gtaaaagcaa caataaacac      4020
     cgctttcaga actgctcttg gcgcaattcg aactacacct attaacaaca tcttgtacga      4080
     agcacgcgca gacactctag aagacagacg tgacctccta acaacaaaaa taatcaaatc      4140
     cttgatgaat gccaaaaact ccccattaat aaaaatcctt aaatcatacc gacccccaaa      4200
     gcgaccacaa tacaaatcaa caatagaccg cattatagaa aaatccgaag cacataatct      4260
     cccacttaag ctgactagtc aacactcaca gaccacacca ccctggaaca ctgatatttt      4320
     aaaaattgac acaacattaa gcacgtacaa caaaaaaaca caacaccaca aacttttcgg      4380
     acactattca cagaaatcaa gaccaaagac aatcacaaat tcacctacat ttatacagat      4440
     ggatctcacg caaactcaat caccagtctc gcaatcacga acgaaacaga agtcataaaa      4500
     ataggccttc tgccacacta ctcctcagta ttctccgccg agcttctagc aataatagag      4560
     ggaatcgaac tgctaaaaaa taaaagagga aaattttgca tatgctccga ctccctctct      4620
     gcaatcgatg caataaaaaa cccgaacaac agcgaacact acacctcaca cgcacggaac      4680
     ctgctccaaa aattcaaatc taaattcaaa ctactttgga tacccggcca cgtaggtatt      4740
     ccaggtaacg aactggcgga caccctagcc aaaaacgcaa ccacgcaacc acttctaacg      4800
     gttgaaaatc taaacacaaa agacatacaa aaatatataa taaacactca ccaagaaaaa      4860
     acactatcaa acataacgaa gacatcaact tggtaccaat caattaacca actccaactc      4920
     aacagctacc acatcaccaa aaacaaccac ccagccatct cacgtcttga ccaaataaaa      4980
     ataacaagac tcagacttgg acacaccaaa ttaacccaca cacactacat cgatccaaac      5040
     cacaacaaca cttgcccttt ctgcaacgat actgtaacaa taacacactt actttccacc      5100
     tgcaacgcgc ttaacatcca aagacaacaa atgtttcaaa acaccaaccc actggaagca      5160
     ctttcaaacc ccacaccacc aaacatttca acaatcctac aattcctaaa aaacacaaat      5220
     ttataccacc gcatataact ttattctatc ttagccgatc atataaataa atacttataa      5280
     gaaatcctaa aaatattatg tacaactcga gctgaaggcc caagttgcca ttgctcaaca      5340
     ttattgctag cccataattt taattatctg ttagcccttt ataaataaat aaataaata       5399
//
ID   I-4_DEu     repbase;    DNA;    INV; 5257 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   11-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DEu.
XX
NM   I-4_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5257
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 946-946 (2012).
XX
RN   [2]
RP   1-5257
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (11-FEB-2022).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   [2]: sequence updated.
XX
SQ   Sequence 5257 BP; 2144 A; 1370 C; 630 G; 1113 T; 0 other;
     cagtatcatc tcaaacctcg cagagaaaag acgtgttact attgagctct cgtagtctac        60
     ctaccaacaa ccaaaaacaa caactaacaa ctgcttatca gaaaaaaaca aacaagtgcg       120
     taaaacaaaa tagaaaaaac aaaaacaact aactcaaaat ccaagtgccg ggcgccagcc       180
     cgaaaaaact acaacaatgg acaaaccacc ggacataaga agtggtacat caatgtacag       240
     caaaaaccca ggcgaaccaa aattcattat cattaacgga ccagacaaca aatccctcga       300
     aaatcttaac cctttcatac ttaaaaaaac gattgacttt acatgcgatg gtgaggtgca       360
     gtcttgcaaa aacactcgtg ccggatacat tttgataaaa actaaaaaca ccttacaagc       420
     aaacaaatta cttaaattaa acaaaattgc gaacattgaa gtaactgtct ctgaacacaa       480
     aaccctaaat ttctctaaag gagtaatata ttgcaaccta cttcgcaaca taagcgaagc       540
     agaaatctta gacgaactaa agccacaaaa agtcaccgaa gtacgaaaaa tatttaaaaa       600
     aaacgatcaa tccacgactg aaactggtct aatcattatt acatttgctt cacttaccct       660
     cccagaatac cttaacattg gatacgaaaa aatacgcgta cgcccatata tctcgatgcc       720
     cttaaggtgc atgagatgct tacgctttgg acacccaacc ccaacctgta agaaccctaa       780
     tgaactttgt aggaactgct ctgataaagt tcatacagag acaaatgaga catgccacta       840
     tgaaaaaagc tgcattaact gcataaacat cgccgatacc gactccaaac acagcccact       900
     agaccgcaac tgtccaacat tcaaaaaaca acaagaacta acaaacatta aaattacaga       960
     aaaagtcgat cacaaaacag cacttacaat ataccacact cgccataacc atccacttcc      1020
     aataagcttc gcctcaattg tatcaaaaaa tctaaccaac actataacac caagcaaaac      1080
     aacaacatca acactcagca atcataataa aaacgcgcaa gatacccgcc aaagcaaacc      1140
     acctacatct tacgacgaca tcttaaccaa cacccacaca agacctacac taactcgatc      1200
     aacaacccaa tcttcacttg aacacatgga cacagacaca ttcatcatgg atttcgacac      1260
     tcccactacc tccaaacata tgacaagcgt aaaaacacag gaccttaaac tccgaatttt      1320
     ctctaacgac aaaaacaaaa cactaactac aaacctaaaa cccacgaaag ctaatcaagc      1380
     aaaaataaaa aagccagacc cagcagtaga caacaaatag gcacaaaatc atctacctcc      1440
     tccacaacaa ccaatcaacc tttaaaatga ccatgaaaat tgtacaatgg aatatgaacg      1500
     gataccttaa caactactgc gaactccaat taatcattaa aaaacaccta cctcttttaa      1560
     tagcattaca agaaactcat ataaaatacc tcaatatacc aatacctgtt aattactccc      1620
     taatagaaaa aacacctcac cgtcacacgg aggcgtagcc atcctggctc ataaatctct      1680
     gcaaaccaaa gaaataaccc taaacgatga ctttgacgca gtatgcttag aagtaacctc      1740
     gaaaatcaaa ttcagactta tttcggcata catcgctcca aacaaatcgt tctcactaca      1800
     aaaccttcag gctgtattag acaactctcc cacacccaca attgtcactg gtgacttcaa      1860
     cggctggcac aaaaactggg gctcaaagca aaacaatcct agagggaaaa tactagagaa      1920
     atacataaca caatctaact acattcttct aaacgatatg tctccaacac atttcagcac      1980
     acacaactca ctaacaaatg tcgatctgac tctcggcagc ccactcctta aaattgacag      2040
     tacctggcgc acagaagata acctttttgg aagcgatcac ttccccatca taattaacct      2100
     cttcacatca aatactgcta acctacaatc aaccacacgc aaacccactt tcattatgga      2160
     taaggcaaac tggcataaat ttgccaagct aacagaaaac ttctctgcgc aacgaccacc      2220
     aagcacaaac ataaacaaag aagctgcaac aatacaaaaa attatccttt cgagcgctca      2280
     caaggcaata ccacaaacac acccaacggg taagcttcat aatgtaccat ggtggaacaa      2340
     caatctcaaa aaactacgag acgataaaat gaaaaaatgg aacgagctta aaagaaacat      2400
     atctacaaaa aacattgtac agtacaaaag ggcaaatgcc ctatttaaac taacactcaa      2460
     acaaactaaa aaagcgagca ttaacaaatt ccatgcggca ttaaccctca aaaacacata      2520
     cactgtatat tcaacccatc cacaaaacaa aacactaata acaaagttga aattgctcag      2580
     ctcttctgcc aaaatttctc aaaaacctcc tccgacagca atttttcaag cacctttatt      2640
     aatcacaaac aaacgtcact cagcaatact attcatctct cacatattcc tagcaaaaga      2700
     gcaaccgaaa tagaaaaacc tataactgca atagaatatt cagcagcatt aaccacatta      2760
     aaaggaaaca caccaggact tgacagaatc aactacgcaa tgataaaaaa ccttgataaa      2820
     acaacaaaaa acagaattat taacctccaa aacgccatac taaacaacta cattccacaa      2880
     acatacaaaa atagcttaat aataccgatc ctaaaaccaa acacagacaa aaccttgctt      2940
     aactcatacc gtccgatctc actaaactca tgcctagcaa aactacttga caaaataata      3000
     gcaaaacggc tgtggtggtt tgtaataaac gacaaactaa tccatagcag tcaaactggc      3060
     ttcagaaagg ggaaatcggc tatagacagt ctactactca tagaccacct cttagcacga      3120
     gctctctcaa gaagaaacca cgcatctatc atatccctag acttcgcaaa ggccttcgat      3180
     agaattggca tccactctat acttgaccaa cttgtaacct ggaaaactgg cccaaaaatt      3240
     attaactacg tacgaaacta catgacaaat agaaaactac tagtgcgcat tgactctgac      3300
     atctcctcct ttcaaccaat gcaaaacggc attcctcaag gctccccact ctccgtggtc      3360
     ctttttgtga ttgcatataa ctcactaaca gaaaagctca cacttcaccc gaacatcagc      3420
     ctaagcgcat acgcagatga cttcaacatc atcctaaaac taaaaaacaa aaaaaaacct      3480
     aaatccgata atatccacta ttacagactg ggcagaatac tccggagcca tgttatctac      3540
     cacaaaatgc aaacacctcc atgtttgcag aaaacataat tgtaactgca ccataacaac      3600
     aggaaacacg caaatgcaag aagtaacatc attaaaaatc cttggtctgc atttcaataa      3660
     caaatacaga tggaaaactc acacggaact actaaacaac aacctaaaac aatatattaa      3720
     cgtaataaaa tgtctctcaa gcgcaaagtt taactgcaac acatctacac tcctaaacgt      3780
     aacaaaagca accatcgtct caaaagcaga ctacggtctt ccaatctacg gctactgccc      3840
     gcacacaata ctgcgcaaag taaagtcaac aatcaacaca gcctttagaa ctgccctcgg      3900
     agccttcaga accaccccaa caaataacat actttacgaa gcaaatgcag acgccttaga      3960
     agacagacga gagttcctta cgtcaaaaat cattaagtcc ctagttaacg ccaaagcctc      4020
     accaataatt aaaattttaa aagcatatcg cccgccaaaa cgtccacaat acaaatcaac      4080
     aacagatcgt attatagaat actcacaagt ccaccaacta ccatttaaac aattaacacc      4140
     acctacacaa accacaccgc cctggaacac aagccctcta aaaatagaca catcgctaaa      4200
     taaattcgac aaaaaaagta accctcctga aattttcaga ttacaattta cagaaattaa      4260
     gacaaaagac gaacacaaat acacatacat ttacaccgac ggatctcaag caaacggcat      4320
     cactagcctg gcaatcacaa gcgaaactga atgcatcaaa ctttatcacc taccacacta      4380
     ctcttcagtg ttctccgcag agctacttgc aatagtagaa gcactgcaaa tacataaaac      4440
     taaaagaggc aaattttgca tatgctcaga ctcactctct gccatcgacg caataaaaaa      4500
     cactaacaac agcgaacact atatctcaaa ggcccgtaac cttctacaaa aatacaataa      4560
     taaatttaaa ttactttgga tccccggtca cgtaggaata cctggaaacg aacttgcaga      4620
     cgccctagca aaaaacgcta caagacaacc acttacaacc atcgaaaact taaacacaca      4680
     ggacatatta aaatatatta aaaatacata tctctcgaaa atgcaattaa acatatccaa      4740
     aacttcacgc tggtaccaag caattaatca tccccaactc aactgccacc aaattaccaa      4800
     aaacattcac tcatcggtca cacgtagaga ccagataata ataacaaggc tcaggcttgg      4860
     acacacaaaa attacacata cacactatat ggacccaact gaaaccagga cctgtccgtt      4920
     ctgcaatgat accaacgatg ccttatcaat taatcattta ctgactaact gcaagtcact      4980
     aaactgccaa agacaactaa tatttaaaaa caccaatcca ctagaatcca tctcaaaccc      5040
     cacactacca aacatattaa aaataatact atttctaaaa aatacaaact tatatcacct      5100
     catttaagat aattctaatt tagccaaaat gtatatataa aatagtactc atgtaattat      5160
     tgtaaaaaaa cgagcggaag gcccccgttg ccattgctca acatcaccgc tacctaataa      5220
     ttttaaatta tttggtagct cttcataaat aaataaa                               5257
//
ID   I-4_DF      repbase;    DNA;    INV; 1952 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1952
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 966-966 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1952 BP; 798 A; 539 C; 237 G; 367 T; 11 other;
     ctctagacaa atcktgcsca gcattcacaa agcaaawaga actaacaacc atcaaaaccc        60
     tkcagaaagt ggatcataaa actgctacaa gaatatacaa catgcgacac atccatcaac       120
     cgaccccaca ctcccagatt gcatcccaac accctacagc aacagcaaac caaacacagt       180
     tgwcgagcaa cgcccaaaga acatccctcc aagcaaccac tcataccaac cagaaccgta       240
     agattaagga atacagcgac ttaatcgata cacaacccag ctcctcatct aagtcaacca       300
     accaaggaac aaagatcctc gacgaagaaa tggaaaccga acaaacattt gacacgacaa       360
     ctacccaccc gaggaagaaa attacagaga ctgatcggaa acttagaagc caaacsaaag       420
     acaaatccag ctcagtttct agaacttmtc tagaagccaa agataaatcc gaccatgaaa       480
     attatacaat gggacatgaa cggataccta aacaactact gcgaacttca aaatcattaa       540
     aaagcaccac cacttataat atccctacag gaaacacatt aaaatttacc aatcacattc       600
     ccatacccat aaactataca ctcatttcaa aaaacacctc atcttcccac ggtggcgtag       660
     gttcttagcc cacaagtcac tgcaagctcg tgagatatac ctcagcgacg attttgatgc       720
     agtatgcata gaactcaact ccaaacttaa gttcagagtt atctcagcct acatagctcc       780
     taacaaatcc ttctccctgc aaaaccttca ggccgtacta gacatctcac atatacccac       840
     cttgatcact ggcgacttta atggttggca caaaaactgg ggctcgaatc aaaacaactc       900
     cagaggaaaa acattagata aatttataac ccaatcaact acatcctttt aaacgacatg       960
     tcaccaactc actttagcac acacaacacg ctaacaaacg ttgacmtaac tttcagcagc      1020
     ccaatcctaa aaatcgacag ctcatggcac actgaagata acctttttgg tagtgatcac      1080
     ttcccataat tattaacctt ttcacctcca acacaacgag ccgccaagtc actccacgca      1140
     aaccaacatt cataaccgac aaagcaaact ggcaaaaatt ctgcaagctt actgaaaaat      1200
     actccgcaca aagacaacca agcacaaaca taaacaagga agctgcaaca atcaaaaaaa      1260
     tcatcctctc cagcgctcac aaggcaatac cccagacaca cccgacaaga aaggccaaaa      1320
     atgtaccatg gtggaataac aatcttagcc aattgagaga cgacaaaatg aagaaatgga      1380
     acgacttaaa aagaaacata tctacagaaa acatcctgaa gtacaaaaaa gcaaacgccc      1440
     tatttagact aacattaaaa caagataaaa aacttagcat aaacaacttt actacccaaa      1500
     tmtcacccga aacaccccca aaaacgatct ggagtaacat ccgacgcttt tgcggactca      1560
     acccccaaaa acatatacac tgcatattta accctaccac aaatcaaaac accacccaca      1620
     aattagaaat cgcagactta ttttgtaaac acttttcaga aacctcatcc gacacaaatt      1680
     ttaccacaac attcacaaac caaaaacaaa cttcactcag taacacacaa aacctgtcat      1740
     acattccmag caaaagagca aatgaaatag aaaagcccat aactccaata gaattckcag      1800
     cagcactaaa cacactaaaa ggaaatacac ccggactcga cagaattaac tatgcaatga      1860
     taaaaaacat agatacaact acaaaaaata gaattataag cctccaaaaa ctcaaattct      1920
     caatagctac atcccccgaa cctacaaaaa ca                                    1952
//
ID   I-4_DK      repbase;    DNA;    INV; 2580 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2580
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1336-1336 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2313
FT                 /product="I-4_DK_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="PCFDRISYPMIKNLPIAVKYRIINHFNIILSTHIPQS
FT                 FKLSLVLPIAKPQKPKTDVTSYRPISLNPCLAKVLDKIMAKRLWWFVLNND
FT                 LIHNSQFGFKRGKSVLDCLLYVDHLAYRSIALKKHLSIISLDFTKAFDRIG
FT                 IHTIIHQLHNWKIGQKTINYIKHFMTNRKIIAKSGKFLSDTFPLNNGIPQG
FT                 SPISVILFLIAYNSLSNIISISKDIKLCAYADDFHLIIQHNKHKNPTTNLS
FT                 TIFNQIDEWCSKSGSVLSKEKCQILHICRKHNCKAKIISGDSQIPITNTLK
FT                 ILGLTINNRYNWNSHINKLKSELAKPLGIIKHLSSLKYNTDTTTLIQIVKS
FT                 IIVSKIDFCLPIYGRAPKSQLNRLKTPLNAATRSALGAFRSTPINNLLTEA
FT                 GINTIEHKRDFLIGKLSKNLIQAKDTPLKTLTKPAKKTYRYPSTIDEIVKI
FT                 CKANSIPYLPIKKNTCKKFNMSNVLKATDTSLSXFNKNATAPIVFQQLFHS
FT                 LKLSYPNHTFIYTDGSKSSGITTYSITSESETIKIGLLPIYSSVLSSEIIA
FT                 IQEAMQIYIKLPGKYAICTDSLSAVSAITNQNNHAHYPASIRNMITQHFPK
FT                 IKLIWIPSHMGIVGNESADKAAKLAAKSPLTYTANYNSNDISHFLKITLLE
FT                 KQSQLRTSDWYQEISRLSTTNQPLRNSSLNRREQIIITRLRLGHTYLTNAH
FT                 YIDKTKNNLCPMCNNAEVNLRHIICTCPAITTQRSLLLHNPDPISTIANPS
FT                 NKNSKNILKFLDNCKITYKI"
XX
SQ   Sequence 2580 BP; 960 A; 703 C; 300 G; 613 T; 4 other;
     ccatgtttcg accgaatttc ctacccaatg attaaaaacc tacctatcgc tgttaaatat        60
     agaataatca accacttcaa catcatcctc tccacccaca tcccacaatc atttaaactt       120
     agtctcgtcc tacccatagc taagccgcaa aaacccaaaa cggatgtaac atcgtacagg       180
     cccatctcat taaatccatg cctagctaaa gttctggaca aaattatggc taaaagattg       240
     tggtggttcg ttttaaataa cgatctcata cacaacagcc aattcggctt caaaagaggc       300
     aaatctgtac tagattgtct actctacgta gaccacctag cctacagatc cattgcctta       360
     aaaaagcacc tctcaatcat atcgctggat ttcactaaag catttgatag aataggcatc       420
     cacaccatca tccaccaact acacaactgg aaaataggac aaaaaaccat aaactatata       480
     aaacacttta tgacaaatag gaaaatcata gctaaatctg gaaaattcct ctcagataca       540
     ttccccctaa acaatggcat accacaaggc tcacccatct cagtaattct cttcctgata       600
     gcatacaatt ccttatctaa cataatttca atctcaaaag atattaaatt atgcgcttac       660
     gctgacgact tccacctcat catccaacac aataaacata aaaatcccac aaccaaccta       720
     tcaaccatct ttaaccaaat tgatgaatgg tgctcaaaat ccggttcagt cctttcaaag       780
     gaaaaatgcc aaatactaca tatctgccgc aaacacaatt gcaaagccaa gataatctca       840
     ggtgactcac aaatcccaat cacaaacact cttaaaattt taggacttac aataaacaat       900
     agatacaact ggaactccca catcaacaaa ctaaaatcag aacttgccaa acctctaggg       960
     ataattaaac acctttcctc tctcaaatac aacacagaca caacaacact aatccaaatt      1020
     gtcaaatcaa ttattgtttc aaaaatagac ttctgccttc ctatatatgg acgcgcaccc      1080
     aaatcccaac tcaatcgcct aaaaacccca ctaaacgcag caactagatc agcattgggg      1140
     gcattccgct ccacacccat aaacaactta ctgacagaag ccggcattaa tacaatcgag      1200
     cacaaaagag acttcctcat cggcaaactc tccaaaaact taatccaggc caaagacaca      1260
     ccattaaaaa ctcttaccaa acccgcaaaa aagacctaca gataccccag cacaatagat      1320
     gaaatagtaa agatatgtaa agctaactcc atcccttacc tcccaataaa gaaaaatacc      1380
     tgtaagaaat tcaacatgtc caatgtcctc aaagcaacag acacctccct ctcaaawttt      1440
     aataaaaacg caacagcccc aattgtattc caacaactct tccactccct gaaactctcc      1500
     taccctaacc acacctttat ctatacggac ggttccaaat cctccggcat aacaacctac      1560
     agcattacaa gtgaaagcga aacaattaaa atcggactcc tacctattta ctcctcagta      1620
     ctttcgagcg agataatagc gatccaggaa gccatgcaaa tttacatcaa attgccaggc      1680
     aaatatgcca tttgcaccga ctccctatca gcagtttccg ctatcaccaa ccaaaacaac      1740
     cacgctcact acccagcctc cattagaaac atgatcaccc aacactttcc gaaaattaaa      1800
     ctcatctgga tccctagtca catgggaata gtgggcaacg aaagcgctga taaagcagct      1860
     aaacttgccg ccaaatcccc cttaacgtac accgctaact ataactcaaa cgatatatct      1920
     catttcttaa aaataacact acttgaaaaa caatcacaac tacgcacgtc tgactggtac      1980
     caagaaatca gcagactatc aacaacaaac cagcccttga gaaactcttc cctaaacaga      2040
     agagagcaaa tcattatcac ccgactcaga cttggacaca catacttaac aaacgctcac      2100
     tatattgaca aaacaaaaaa caacctgtgt ccaatgtgca acaatgccga agtaaatctt      2160
     cgacatatca tttgcacttg ccctgccatt accacacaac gttccttact cctccacaac      2220
     cctgacccta tctccacaat agccaacccc tcaaacaaaa actccaaaaa catcctcaag      2280
     ttcctagaca actgtaaaat tacctacaaa atatgaagcc gctgtaaata taaattatgt      2340
     atgattccac ctatgtatgt atgtttatgt tatccttttg taaatatcta ttcattgtat      2400
     caatgtaatt amtgtaaata caactaaacc aacacaaacc gcgagccgaa ggccttagat      2460
     gctatggctc tttacccata gttagctctt agtttaatac tatttgttag ctttagataa      2520
     ataaaataaa taaaaatatt gaaatcgatc agcaattaag tcaaawmggc ggccatataa      2580
//
ID   I-4_DSuz    repbase;    DNA;    INV; 5278 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   06-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5278
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 612-612 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           195..1394
FT                 /product="I-4_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MLRPPDLNDRTQCNEIPFYEPKFIVITRSDENSFEKV
FT                 SPFVIKKVIDFTCGSEVISCQKTRAGTLLIKTKGLYQAQRLLNLKAFHDFP
FT                 VTVSEHSSLNSTQGIVYSNDLRGIQEDEILRELSFQKVTKVEKILKFIDNK
FT                 PTETGLIKFTFATTSLPPTLKIGYESVKVRPYIPLPLKCRNCHRLGHITKA
FT                 CKSPKLCSNCSSVDHTTDKEECSNNKFCINCRNDVNDEHNHSPTDKSCPAF
FT                 IKQKEITAIKVTEKVDFKEAIKIYHSRHIHKPTSYAKIAANQKTTSTQDQN
FT                 KENSVNHKIQHQQRPIRNYDDILSDELEPSTSRTATHRRPVTECESGDEDM
FT                 EVDRIDAYIQKITKKDVPESDRKLRSQIKDKSIVSKPLKAKDKTEKPTINT
FT                 KNLKHQ"
FT   CDS           1433..5122
FT                 /product="I-4_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTLLIIQWNCNGYMNNYINLQLILKSYMPKVICLQET
FT                 HIHSLHNIPIPPNFTIIEKNTANNSHGGVAMLVHNSMQYDRLTMNHDFDAV
FT                 GIVLHSKMKIRLITTYIPPDRSFQINNLVNMFGNPYENTIITGDFNSWHQS
FT                 WGSPTNNRKGNIIFKYIIDSNLLTLNDGSPTHFSTHNSLTHVDLTISTPNL
FT                 VTHSKWKTDEDLFGSDHFPIHISLFEDVMEREGYGQPRFKLDAADWSLFSV
FT                 LTEKYHNLRTSSNEVNQEAAKIIKIIRQSANISIPQSNPSFNRKKTVPWWS
FT                 KNLEELKSNKNRAWNQLKRCITTENIIHFKKTKALFRRQLKESKKIALQTF
FT                 TSEISPNSTTARMWSNINTFCGRKLKHDIHCISSPNDSSRNITGKSEIAQT
FT                 FANYWSEQAADENFSSVFQQKKSQIESSTTLLAPCAEALMIDDNISFIEFS
FT                 SALNSLKGKTPGRDRISYPMLKNLSNPVTQRLIELFNNILNSHIPQQFKNS
FT                 TVIPIHKPNSVKTAVSSYRPISLNPCMAKVMDKIVANRLWWFATNCKLLDS
FT                 RQLGFRKGMSISECLALLDHQTNAALSTRRHLSIISLDFEKAYDKIGIHTI
FT                 VDELIRWRIGSRILRYVINFLSNRRINIKIRNVYSENKPFHNGIPQGSPLS
FT                 VILFLIAYNKLCRTIAIHKEFNFFSYADDFTIVRQVRKRTMNANINALFTD
FT                 ILNWCSYSGAKLSISKCKHLHICRKTNCNFKINSTAYPLSSSDHIKVLGLT
FT                 ITKRYRWKKHIDSLTVQISKRLNIIKWLASQKYNCDTRTLISLTNALIMAK
FT                 IDYCLPFYGNCPATYLKKLKANYHSALRLAFGAFRTTPINNLLFEAQLMPI
FT                 ELRFEMSIAKMCKSLLFSANTPIQTILQKIKKSIRRPRLQSVLRKAFQFSK
FT                 DNGTFTPPIKPYKQKTPPWFFSKDTVNLSLHYTTKAITPPTVYQQKFISLK
FT                 ENFHNYGFIYTDGSKSAQGVSYSVTTETTVIKTAILPTLSSIYTAEVAAIY
FT                 AACKYADKQKKKVVICSDSLSAVTSVTNTNNQSFYTVRIRDILNRHQPKII
FT                 LLWIPGHNNIPGNDTADLAAKEAHKFPQVMECNYNFTDTQLFIKNTFKKQM
FT                 ESIWQNASNHYKYFNEKKLSIKDYTIPSEDNINRRDLTKFLRLRFGHTRYT
FT                 HEHVLNKQPPPQCEHCSTRNNVRHFFLECPVHETSRSNTLSIKSPDALSPK
FT                 STNIASANVFIKAIRLYNNI"
XX
SQ   Sequence 5278 BP; 1967 A; 1287 C; 809 G; 1214 T; 1 other;
     cagtcgacgt tttgactccg aggagattag acgtactttt gtcatcgcag agcaagtgat        60
     cgcaataccc aagctctttt tcaaaaaaca aaatcaaaac aaaatccaaa aaaaaamcaa       120
     aaacaatttc tgcacagaaa ccgttacatc aacatcagac cacggagggc cgcagccagc       180
     ccgaagcagc tgcaatgctt cgaccgccgg acttaaatga ccgcacacag tgcaacgaga       240
     taccttttta tgaaccaaaa tttattgtta taaccagatc cgatgaaaac agttttgaaa       300
     aagtgtcacc gtttgttata aagaaagtga tagatttcac ctgtggaagc gaagtaatat       360
     cttgccaaaa aactcgagct ggaacactgc taattaaaac gaagggatta tatcaagcac       420
     agagattatt aaatctaaaa gcatttcatg attttccggt aacagtatcc gaacacagca       480
     gtcttaactc cacccaagga atagtttatt caaacgactt gcgaggcatc caggaagacg       540
     aaattctaag agagctctca tttcaaaaag ttacaaaagt agaaaaaatc ctgaagttta       600
     ttgataacaa accaactgaa accggcctta ttaaattcac cttcgcaaca acaagcctac       660
     cacctacttt gaaaattggc tacgagagtg ttaaggtgcg accctacatc cccttgcccc       720
     ttaaatgccg caactgtcac agactgggac acataacaaa agcatgcaaa agcccaaaat       780
     tatgctccaa ttgctcatct gttgaccata ctaccgacaa agaggaatgc tccaacaaca       840
     aattctgcat caattgtaga aatgacgtaa acgacgaaca caaccacagc ccaacagaca       900
     aatcgtgccc agcctttatt aaacaaaaag aaataacagc aattaaagtc accgagaaag       960
     tcgattttaa ggaagccata aaaatatacc attccaggca tatccacaaa ccaacatcat      1020
     acgcaaagat tgctgctaat caaaaaacaa ccagtactca agaccaaaac aaagaaaact      1080
     cagtaaacca taaaatccaa caccaacaac gacctatacg gaactacgat gacatcttaa      1140
     gcgacgaatt ggaaccttct acatccagaa cagcgacaca ccgccgtccc gtaaccgaat      1200
     gtgaaagcgg cgacgaagac atggaggtcg accgaattga tgcctacatt caaaagatca      1260
     ccaaaaaaga cgttccagaa tcagaccgta agctgagaag ccaaattaaa gataaatcaa      1320
     tagtatctaa accccttaag gccaaagaca agaccgaaaa acccactatt aacactaaga      1380
     atctaaaaca ccagtagatc tttagttaaa aaatttactc tgcaccctag atatgaccct      1440
     gcttataata caatggaact gcaacggcta catgaacaat tatataaatt tacaacttat      1500
     tctaaaatcc tatatgccta aagtaatctg ccttcaagaa acccacatcc actcccttca      1560
     caacatccct atacccccaa acttcacaat tatagaaaaa aacacagcca acaactcaca      1620
     cggtggagta gctatgctag tccacaactc tatgcaatac gaccgcctta caatgaatca      1680
     cgatttcgat gcagtaggca tagtcctaca ttccaaaatg aaaatacggc taataacaac      1740
     ctatatccca ccagatagaa gttttcagat taataacttg gttaacatgt ttggaaaccc      1800
     ttacgagaac acaataataa cgggggactt caatagttgg catcaaagct gggggtcgcc      1860
     tacaaacaat agaaaaggaa atattatatt caaatacatc attgattcaa acctactcac      1920
     tctaaacgac ggatctccta cccacttttc aactcataat tcgctgacgc acgttgatct      1980
     tacaattagt acaccaaatc ttgtcaccca ctcaaagtgg aaaacagacg aagacctctt      2040
     tggaagcgac cattttccca tacacatatc tctgtttgag gatgtaatgg aaagagaagg      2100
     ttatggacaa ccaagattta aactagacgc agctgactgg tcactttttt ccgtccttac      2160
     ggagaagtac cacaatctaa gaacaagtag caacgaagta aatcaagaag cagcaaaaat      2220
     aattaaaatt ataagacaaa gtgcgaacat ctctattcca caatcaaacc ccagctttaa      2280
     cagaaagaaa acagtacctt ggtggagtaa aaaccttgaa gaactcaaat ccaacaaaaa      2340
     cagagcttgg aatcagctaa agcgctgtat taccactgag aatataatac acttcaagaa      2400
     aaccaaggcc ctctttagac gacagttaaa agaatcaaaa aagatagcac tacaaacttt      2460
     tacatcggaa attagcccaa actctacgac tgctagaatg tggtcaaaca ttaatacttt      2520
     ctgtggcagg aagctaaaac atgacatcca ctgcatttcc tctccaaatg attcatcccg      2580
     aaacataact ggcaaatcgg aaatcgctca aacctttgca aactactggt cagaacaagc      2640
     agccgacgag aattttagct cagtttttca acagaaaaaa tcccaaatag aatcgtcaac      2700
     tactctctta gcaccgtgcg cagaagcact gatgatagac gataatatct cttttataga      2760
     gttctccagt gcgttaaatt ccctcaaagg taaaactcct ggccgcgata gaatatcata      2820
     cccaatgtta aagaacctat caaaccctgt aactcaaaga ctcatagagc tattcaacaa      2880
     tatccttaac agccacatac ctcaacaatt taaaaacagc acagtcatac ccatccacaa      2940
     accgaattcc gtaaagacag cagtaagctc ataccgcccc atatccttaa acccatgcat      3000
     ggcaaaggtc atggataaaa tcgttgcgaa caggctgtgg tggtttgcta ccaattgcaa      3060
     gctcctcgat agccgtcaac ttggctttcg aaaaggtatg tcgatatctg agtgtctagc      3120
     actgctagat catcagacta acgctgccct atcgacaaga agacatttgt caataataag      3180
     cttggacttc gaaaaagcat acgacaaaat tggaatccat acgatagtag atgaactgat      3240
     cagatggcga ataggttcta gaattctaag atatgtcatt aactttctca gcaacagaag      3300
     aataaacata aaaataagaa acgtatattc agaaaacaaa ccttttcaca atggcatacc      3360
     acaaggatca cccctatcag tgatactctt ccttatcgcg tacaataaat tgtgccgcac      3420
     gattgctatc cacaaggagt tcaacttctt ttcctacgcc gacgacttca ctatagtaag      3480
     acaggtcagg aaaaggacca tgaacgcaaa cataaatgca cttttcactg acatcctaaa      3540
     ttggtgtagt tattctggcg cgaagctttc catctccaag tgcaagcact tacacatatg      3600
     tagaaaaacc aactgcaatt tcaaaatcaa ctcgaccgct taccctctaa gctcaagcga      3660
     ccacataaag gttcttggtt taaccataac caagagatac agatggaaga aacatattga      3720
     ctcactgaca gtccaaatct ccaagcgtct caacatcata aaatggttgg caagccagaa      3780
     atacaactgc gatacaagga ctcttataag cctcacaaat gccctaataa tggccaaaat      3840
     cgactactgc ctccctttct acggaaactg ccctgcaaca tacttaaaaa aacttaaagc      3900
     caattaccac tcagccttaa ggctggcgtt tggagcattt cgcaccaccc ccatcaacaa      3960
     tctccttttc gaagcccaat tgatgccaat agagctaagg tttgaaatga gcatagcaaa      4020
     gatgtgcaag tcattactgt tctcagcaaa caccccaatc caaaccatcc tacaaaaaat      4080
     aaagaagtct atacgaagac ccagactcca atcagtctta cgtaaagcat tccaattctc      4140
     caaagataat ggcacattta cgccacctat aaaaccatac aagcaaaaga caccaccatg      4200
     gtttttctca aaagacacgg ttaacctttc tctgcattat acaacaaagg caatcactcc      4260
     gccaacagta taccaacaaa aatttatatc tctcaaggaa aactttcata actacggatt      4320
     tatctacacg gacggttcca aatcagccca aggagtatcc tatagcgtca cgacagaaac      4380
     aacagtaatt aaaacagcca ttcttccgac actcagctca atttatacag cagaggtggc      4440
     agccatctat gctgcatgta aatacgctga caagcaaaag aaaaaagtgg ttatctgctc      4500
     tgactcccta tctgctgtaa cttcagttac caacaccaat aaccaatctt tctataccgt      4560
     tcgtattcga gacatcctca accgccacca accaaagatt atattactgt ggattccagg      4620
     ccataacaat attcctggta acgacacagc agacctagca gcaaaagaag ctcacaaatt      4680
     cccacaggtt atggaatgca actataactt tacagacaca cagttattca ttaaaaatac      4740
     cttcaaaaaa caaatggaat cgatctggca aaacgcatct aaccactaca aatatttcaa      4800
     cgaaaaaaaa ttatcaatta aagattacac catcccatcc gaagacaaca tcaaccgcag      4860
     agatctcaca aaattcttaa gactacgttt tggacacaca agatacaccc atgagcatgt      4920
     tctcaataaa caacccccac cccagtgcga gcactgcagt acgcgaaaca acgtgcggca      4980
     ctttttccta gagtgtccag ttcatgaaac ttcaagaagc aacaccctct ccataaagtc      5040
     acctgatgcc ctatccccaa aatccaccaa tatcgccagc gccaatgttt tcatcaaggc      5100
     catacgctta tataacaata tataaatttt gtaaataacc atatataaat acactttttc      5160
     agaaaatatg taaataacat cctcctagct taaggcccag tagctatagc taaattaagt      5220
     ggttggtggc aatttgcaat tgtcccaaaa ccagaatata aataaataaa taaataaa        5278
//
ID   I-4_DTa     repbase;    DNA;    INV; 5070 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.11, Created)
DT   24-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5070
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, 97% identical to another copy.
XX
SQ   Sequence 5070 BP; 2059 A; 1236 C; 664 G; 1111 T; 0 other;
     gcccgccaag aaaacacccc agaccgaagt aagcacgcga atctatttat agacccatcg        60
     gttgaagaca attaccacgc cgaacacaac aagtacagct aagcaccaaa aaccaacaac       120
     gaccccggaa gggccccggc acccgaggaa attccgtggt cccagatcgg acaagaaaca       180
     tttaaaaaac ccaccgtttc aacaaaagca atcgactcgc cgtagggaga agtccagcaa       240
     aaaaaggcac ctatgattaa aacaaaagcc caaaccaaac gaaaactcgc aaactaacaa       300
     atggcgaaac aaccaatcag ttcagaacat cgatcacaaa cttgcaaagg ggatatacgc       360
     aacgactaag agatacgaag aggcagaaat ttggaaaacc aaaacaacaa aatgtcatag       420
     aagaaaaaat tttgaaaaaa caatgttgga atccccaccg aaacgactga aactacatac       480
     tcgctaccaa cctaccggaa aacatcaaca tggatagaag aacaaaacga ccataaccca       540
     cagccaatgc ggagcaatgc cagcgtattg gacacattgc aaagtttgcg aaagatcagg       600
     ccgcccgaat tgctgccgcc tatcaaccga cgttctgaat ggagaagaac aaaaaaccca       660
     cgtgtatcaa ttgcctaaaa acaaacaccc aatgcaatca tcacgcaaga taggaagtgc       720
     cctgtcttca aacccatcaa gaagttcaag caataaaaac ctacaaaagg gacaccgaaa       780
     gcctggcaat ctacaaggag agacatcaac cgatgggtcg ttgtatcaca gttgcaaagt       840
     ctagccaaaa tcaaacacac caacaacagg aagcaacaca aagcccaacc aaacccacac       900
     catcaacaac ctgggaaacc atcaacaaca accaacggaa aattatcacc tatgagacga       960
     agatgggatg tccaccagct ccatcagctc ggaacaaaag ccaacgataa gtccaacaca      1020
     gcaaaattta cccaaaaacc taccaaagaa aaaagacttt taaaaaaaag ccaacgagag      1080
     cccaaaaacc tcaatgcaac tagatctaaa attaagaact taataaacac agaaggaatt      1140
     caaatctaaa ttaagaaaac cccaacatag ctccaaaact caccaaccct ttaaaatgtc      1200
     tctaatatac tacaatggaa taaaacggtt aagtaacaac tataacgaac tcttaatttt      1260
     aataagacaa cacaatccaa aaaaattcat tcaagaaacc cataaacacc ttcccaacac      1320
     atccctatcc cagtcaattt gaaaaaccac acaacatcta tcgtagctaa gggcggagtc      1380
     gccttattaa ttcaaaaaca cacaacacag acaaatccct acgggacata tatcgagacc      1440
     attgcgctcg aagttcaatc aacaaaaaat ttaatatatc gcaacaacat cctcctaatc      1500
     aaaaatcaca caaatgaatt gaaaacaatg ttcccaagcc taacacacca tctattatca      1560
     caggtgactt aatagttgga aagtatgggg atcacccaaa aataaaaaga ggaaacattt      1620
     tagggaaatt tatactcaac agcaactata tcattctaaa taatggaaac ccacacactt      1680
     ctccacacat agctcatata cccacattga tttagccctc tgctcacctg accttaaaat      1740
     tcacaccacg tttaaaatta cgacacattg caaggagtga ccactcccca tcagcaacaa      1800
     ttgttccact cacaggaaaa aagaaaagat acatacctag atttattaaa acttagccaa      1860
     ttgggaccaa tatgaattac tacaaacaac aaactcttcg acctatttca caaaaactaa      1920
     caaagaagcc agtaacatcc ataaaataat tttacaaagt gcttaaaaag catcccccaa      1980
     actaagcccc caaacaacac cacaacgtcc ctggtggaac aaaaacttag aatccttaaa      2040
     aaaacaaaaa acacagcctg gaaaaattaa ccaaaataga acaagaaaac ctaataaact      2100
     ttaaacgaac taacgcacta tacagaagga aattagaaca agtaaaagaa agcaacaaac      2160
     gttaacatcc aatatcaacc cagacaccaa atgtcaaaca attggaacaa aattcgaaca      2220
     ttctgtggct tacataagca acactattca ttgtataata gaccaaaatt caaacaaccc      2280
     ctaacaaatc aagagatata gcccaagctt cccaaccatt ggtcttcacg atccgaagac      2340
     aacaacttct caacttcttt cctccaagcc aaaaacgaca taataaacaa cacgcaactc      2400
     gatctaccgc acaaaacagc agaatttatg gaacacaaca ttaatttcat agaattctct      2460
     gcagccttga atagccttaa aggaaacaca ccaggatacg ataaaatcaa ttacacaatg      2520
     ataaaacaca cttcaaaacc cgtaaaaaat agaataatag ccctctttaa caacatctta      2580
     aaaacacata taccccaaat atacaaagtc agcaccatta taccaatcca taagcctgga      2640
     aaggacaaaa cattgatcga atcctaccgc cccatatcac taaatccttg cttatcaaaa      2700
     gtattagata aaattatttc caaacgactg tgctggtttg ttacaacaaa caaactgctt      2760
     aatagtcacc aacttggctt ttgcaaatca gttacagact gtctactgta cgtagacgct      2820
     ttgatcagca gagccctctc cgaaaaacga cacgtatcca taatatcatt agactttgag      2880
     aaggcatttg aaaagatagg attgcacaca atactaagcc aattacggac ttggggttgc      2940
     ggtgaaatca tcataaacta tgtaagcaac tttatgacaa accggaaaat tcgagtacgc      3000
     acgaaccaga tacactcaga cattcgcaat ctgtataatg gtattccgca aggatcccca      3060
     ttatcagtta tcctatttct aatagcattt aacagcatag ctgacatcat agagaaacac      3120
     aaaaacctta aattcacggc ttatgcggat gatttcaata tacttattga cctaaaaaga      3180
     ggaaaatccc taagacccaa tctagacact cttttcactg aaataaacaa ctggtgctca      3240
     atttccggcg cgtcactatc cttaaataaa tgcaaccaca ttcatatatg tagaaaaatc      3300
     aactgcaaat gcaaaataga cataagctca tgcgtgatca aaacatctaa agaaataacc      3360
     attctaggac taaccattaa ctcaaaatac aggtggaact cccacattaa taaactaaaa      3420
     aagtcactgt ctaaaccgtt aaacataatt aaatgtctgt caaactataa gtacaattgt      3480
     cacccatgca ccctagtcca aatagcaaaa agtctatgca tttcaaaaat agaatacgcc      3540
     ctaccaatat acggtaacgc cccaaagtct actttaaggc caattaagac ttacatgaac      3600
     tcagctctgc gctctgcgtt aggagcattt tactccacac caacccacaa cctctacctc      3660
     gaggcgaatg tatgcccact ggaaaacaaa atcctatttg caaaagccaa acttttcaac      3720
     acaatagtac tctcccatga caccccctta attcattagc gaaaaaaatt ataaataaac      3780
     acaataaaaa atacaagaac tcagtgctcc aagactgcat caacatttgc tccaatctta      3840
     acctaacaat tacattagct aaaaaactac ctaaagccaa tccaccatgg cacattaatc      3900
     ccgacacaat agacacccac cttaataaaa atgaaaaatc aattacccca aaggaggtat      3960
     ttttaaaaga atttttgaaa ctaaaaaaca aattaaaaga ctataccctt atatacacag      4020
     acggatcttt atcaaaagaa ataatcggct atgcaataac aacagagagc tcaatcttaa      4080
     aactgggagt actcccggag tactcttcag tgtatacagc cgaagctata gcaattcttg      4140
     aagcgatcaa gatatcctta aaagtgagag ggaaaacatg catttgcact gattccctat      4200
     cggtagttga aggcataaaa aacatagaaa attctacaca tatgatctcc caaattcgaa      4260
     gtctgctaat aaacaacttt ccaaaaatta aaatactgtg gataccaagt cacgtaggta      4320
     taacaggaaa tgaatttgcc gatgaagctg ctaaagcagc cacgatttcc cccttaatag      4380
     catcaccaaa cataaataaa tcagacataa acagatattt aaaatcaaca ctcctaaatt      4440
     tttcttcaca cctgcttaat caaacttcta cctggtacca aacgtataat gacggccaac      4500
     tcaatattgc ccactacaca aaaaacactt tctttgccag gctgacaaga actgaacaaa      4560
     tcaaacttat acggttacga cttggtcata ctaagctgac ccatgcaaat agattccttc      4620
     aacctccttc caaccaatgc caattctgca acaaccctga cacatcaatc aaacatattt      4680
     taaacgaatg cccatcgttt caaaacatta gaccctcaac accgaactcc gatctcattc      4740
     ctctattaac taacccaaaa ccggaaaacc tacttatcat tcttactttc cttaaaaaag      4800
     ccaacttact taatcgcctt taagatatac ttcttatcaa catataccta ttatacctat      4860
     tattactaaa atcaaatgtt aatcttaaga ctactatatt acccattata tcaattgtca      4920
     tttaattaaa cgttaaatgc taaacgttct agataataag atggaaaatt tatgaaacgt      4980
     taatcagccg aaagccacag cagctatggc tgtcatcccc tacggtagct taattttgta      5040
     aaataagcat accctgtaca aataaataaa                                       5070
//
ID   I-4_DYa     repbase;    DNA;    INV; 4199 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4199
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1922-1922 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..607
FT                 /product="I-4_DYa_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="KFCVNCKYDINDQFNHSPLDKSCPAFIKQKEITTIKT
FT                 LEKVDHKTATRIYNLRHIHQPTPYSKITSAQQPEKIMMPTQQNDKSQGSTH
FT                 KNPSAHQLNRQIRSYSDIIDTQPSTSSKSINPRKEFVDEKMDTETSAAPKX
FT                 THSNRLIPETDRKLRSQVKDKSNPIAKPSLKAKNKTEKIKPNSLSLAEELS
FT                 KIANNNSSEEEL"
FT   CDS           join(665..1006,1049..4198)
FT                 /product="I-4_DYa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="VFLXILIVQWNCNGYLNNYDQLQLLLKYYKPKAICLQ
FT                 ETHLHSLHNIPIPINFTLIHENTSNNTHGGVAILVHNSIQYESLTLXNDFD
FT                 AVGVLLHSKQKIRLISTYTKKLNYTILATSTAGIRAGDRRIITRRATLFLN
FT                 MLASQTHSLLTHHTMTHVDLTIITPNLFTFTKWKTDHDLYGSDHFPIHISL
FT                 FENEVTGTNHRLPKFKVDSANWPLFTSLTLTYHIEKPIGNQVNQEAANIIK
FT                 IIRQSANIAIPQTNPIFNKKHTVPWWSKTLDQLKRNKNNSWYKLRRCINIE
FT                 NIIQFKKAKALLRREIKQAKRSSLQNFTAEINPSSSPSKIWANINTFCGRK
FT                 IRNDIHCITSPTIPTLNIIDKKTIAQIFATHWSESSSDSNFSDSFQANKTR
FT                 SKAIIPTYETSSESFLIESKISYIEFRAALNSLKGKTPGLDRISYPMLKNI
FT                 SYPVSLRLIDLFNNILDSHIPQHFKNSTILPIHKPNTAKISINSYRPISLN
FT                 PCISKVLEKIIANRLWWLAVNSKLLDSRQLGFRKGMSVSECLTLLDYQTTA
FT                 ALSTRSHLSVISLDFEKAYDKIGIHSIIDELHRWKIGPKILNFIKNFLTNR
FT                 KIKVQVSNEFSDNQPLYNGIPQGSPLSVVLFLIAFNKLCRTIEVHRGFQFF
FT                 SYADDFTIVKKINKNVNSLQINPLFKDIIKWCEYSGAKLSIHKCQHLHICR
FT                 KHRCNFKINSQAYPLIQTNSLKILGLIISNKYRWKDHIESLAIQISKRLDI
FT                 IKWLGNQRLNCDFRSLVSTINALLMSKIDYCLPFYGNCPTSYLKKLKTLYH
FT                 AALRFAFGAFRTTPINNLLFEAEIMPIELRLSLTSARICKSFHFANNTPLQ
FT                 SVLQKIKKSRRKPRIPSIIHRVSKFRYENGLFIPPLKSGKQKTPPWSFSKD
FT                 TINLTLHYTLKSSTPPEVFQRKFLSLKEHYNTYTFIYTDGSKSTKGVSYSI
FT                 TTDTHVIKSTLLPAHSTIYTAEVAAIYAACQYAESQKQRFIVCSDSLSSLQ
FT                 SIGNINNQTFYTSQIRDILNRCQPKIILLWIPGHTNITGNDTADLAAREAH
FT                 IFPQIFEINKNYKDTQIYIKNLFKKESILIWENTSEHYKYINPNKTSIKNY
FT                 NITPQDNINRKDMVKFIRLRFGHTKYTKEHLFNKQPAPQCGLCNTSITIRH
FT                 IFLEC"
XX
SQ   Sequence 4199 BP; 1577 A; 1029 C; 564 G; 1025 T; 4 other;
     aaaattctgt gtaaactgca agtacgacat caatgaccaa ttcaaccaca gccccctaga        60
     taaatcatgc cccgctttta taaagcaaaa agagataaca acaattaaga ctcttgaaaa       120
     agtggaccat aaaaccgcaa caagaatata caatcttcga catatccatc agcctactcc       180
     gtactccaag ataacatctg ctcaacaacc tgaaaaaata atgatgccaa cacaacagaa       240
     tgacaaatcc caaggatcta cacacaaaaa ccctagcgca caccaactca atcgccaaat       300
     aagatcgtac agcgacatca tcgacaccca gcccagtacc tcatcgaagt caataaaccc       360
     aagaaaagaa ttcgtcgacg aaaaaatgga taccgaaact tcagcagccc ccaagatkac       420
     ccactctaac agactaattc cagaaactga tcgtaaactt agaagccaag ttaaagataa       480
     gtctaaccct attgcaaaac cctctttaaa agccaaaaac aaaaccgaaa aaattaaacc       540
     taactcctta agtctggcag aagaattaag taaaatagcc aataacaaca gctccgaaga       600
     agagctctaa gcacttattt ataaagttta attctcattt catttgcatt ttccctttac       660
     ataagtattt ttgawgatat taattgttca atggaactgt aacggttacc taaataatta       720
     cgaccaactt caattactat taaaatatta taagccaaaa gccatatgcc tgcaagaaac       780
     ccatcttcac tcccttcata acatccctat ccctatcaac ttcacactta tacacgaaaa       840
     cacgtcaaat aacactcacg gaggagtagc aatacttgtc cacaactcta tccaatatga       900
     atctctaact ctaagkaacg acttcgatgc ggttggagta cttttgcact ccaaacaaaa       960
     aatacgactt atatcaacgt atacaaaaaa gttgaattac acaatttaga aaacatgttt      1020
     ggaaacccta acgacaacac tattataact ggcgacttca acagctggca tcagagctgg      1080
     ggatcgccga ataataacaa gaagggcaac actattttta aatatgttag ccagtcaaac      1140
     ccactcactt ctcacacacc atactatgac acatgtagac ctaacaatta taactccaaa      1200
     ccttttcact ttcactaaat ggaaaactga ccacgatctc tacggaagtg accatttccc      1260
     aatccacatt tccctctttg aaaatgaggt aacgggaacg aaccaccgat tacccaagtt      1320
     taaagtagac tctgcgaatt ggcccctctt tacatctcta acgttgacat accacattga      1380
     aaaaccaatt ggcaaccaag ttaaccaaga agccgccaac atcattaaga ttattcggca      1440
     aagtgccaac atcgcaatac cccaaacaaa cccaatcttt aataaaaaac acactgtgcc      1500
     ttggtggagt aaaactctcg accaattaaa aagaaataaa aacaattcat ggtacaaatt      1560
     aagaaggtgt attaacatcg aaaacattat acagtttaaa aaagccaagg ctttactgag      1620
     aagagaaata aagcaagcaa aacgtagctc actccaaaac ttcactgcgg aaattaatcc      1680
     cagctcatct ccttcaaaga tttgggcaaa catcaacacc ttttgtggca gaaagattag      1740
     aaatgacatt cactgcataa cctctcccac tattcctacc ctaaacatta ttgataaaaa      1800
     aaccatcgcc caaattttcg ccacccactg gtcagaatcg tcttccgact ctaatttcag      1860
     cgactctttt caagcaaata agacacgatc aaaagctata atccccacct acgaaacatc      1920
     atcagagtca tttttgatag aaagtaaaat ctcatacata gaatttagag cagcactaaa      1980
     tagccttaaa gggaagaccc cagggcttga ccggatttca tatcccatgt taaaaaacat      2040
     cagttaccct gtatcactcc gccttataga cttatttaat aacattctcg atagccacat      2100
     tccacagcat tttaagaaca gcacaatact accaatccat aaacccaaca cagccaaaat      2160
     atccataaac tcatatcgac cgatttctct aaacccttgc atatctaagg tactagaaaa      2220
     aatcatagca aaccgactat ggtggcttgc ggttaacagc aaacttctcg atagtcgaca      2280
     actcggattt cggaagggaa tgtcagtatc tgagtgccta actctgttag attaccagac      2340
     tacagcagcc ctatccacta gaagccacct atcagtcata agccttgact ttgaaaaagc      2400
     ctatgataaa attggaatac acagtataat cgacgaattg catagatgga aaatcggccc      2460
     aaaaatactg aattttataa aaaacttcct gaccaaccgt aaaattaaag tccaagtcag      2520
     caacgaattt tcagacaacc aaccactcta caatgggatt ccacaaggtt ccccattatc      2580
     agtggttcta tttttaatag ccttcaacaa actctgtcgt accatcgaag tccatagggg      2640
     cttccagttc ttctcctacg cagacgactt cactattgta aagaaaataa acaaaaacgt      2700
     aaattccttg caaatcaatc cccttttcaa agacataata aaatggtgcg agtattctgg      2760
     agcgaaactc tcgattcata aatgccagca cctacacata tgcagaaaac acagatgcaa      2820
     cttcaagatc aattctcagg cttaccccct tatccaaact aactccctta aaatccttgg      2880
     attaataatc tcgaacaaat acaggtggaa agaccacata gagtcattgg caattcagat      2940
     ctccaaaaga ttagatatta taaaatggtt agggaaccaa cgactcaact gcgacttcag      3000
     atctctagta agtacaataa atgccctctt aatgtctaaa atcgactact gcctaccgtt      3060
     ttacgggaat tgcccaacct catacctaaa aaaactgaaa acgctctacc acgctgcctt      3120
     aaggttcgct tttggtgcct tccgcaccac acctattaat aatcttctct ttgaagctga      3180
     aattatgcca atagagttaa gacttagtct gacatctgca agaatatgta agtcgttcca      3240
     tttcgcaaac aacactcctc ttcaaagcgt cctacaaaaa attaaaaaat ctagacgaaa      3300
     acccagaatt ccttctatca tacacagagt atccaaattt agatacgaaa atggtttatt      3360
     tattcctcct ttaaaatcag gaaaacaaaa aactccccca tggtcttttt caaaagacac      3420
     aataaactta actttacact acaccttaaa atcctccacc ccaccagaag tatttcaaag      3480
     aaagttcctc tccctcaaag aacactataa cacctacaca ttcatttaca cagatggatc      3540
     gaaatctaca aaaggagtmt cttacagcat tacgactgac acacacgtta tcaaatccac      3600
     tctcctacca gcacatagca ctatatacac ggcagaagtg gcagccattt atgctgcctg      3660
     ccaatacgcg gaaagccaga agcagagatt tattgtctgc tctgactcgc tgtcatcact      3720
     acaatcaata ggcaatatta ataatcaaac tttttatacg tcccaaatca gggacatcct      3780
     taaccgatgc caaccaaaaa taatattatt gtggatccca ggccacacaa atattactgg      3840
     gaacgacacg gcagatttag ctgctaggga agctcatatc ttcccacaaa tattcgaaat      3900
     caataaaaat tataaagata cacaaatata tattaaaaac ttatttaaaa aagaatccat      3960
     attaatatgg gaaaatacat cggaacacta caaatacatc aaccccaaca aaacatcaat      4020
     taaaaactat aatattactc cacaagacaa catcaaccgc aaagatatgg tgaaatttat      4080
     aagactaagg ttcggacaca ccaaatacac aaaagaacac ttatttaaca agcaacctgc      4140
     accccaatgt gggctctgca acaccagtat cacgatacgc cacatttttc tagagtgtc       4199
//
ID   I-4_LMi     repbase;    DNA;    INV; 5904 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5904
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3137-3137 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(347..1333,1273..1668,1454..1966)
FT                 /product="I-4_LMi_1p"
FT                 /translation="MENIDEIPADTGQGSAKALQIRHNNEPAMLHSSTVIT
FT                 TDQHPIKMCSQDNCSQCRLMEVEQHSSHSVVSQCVTNNSQRQKSRHRSPSS
FT                 QQVTAPDANAPKKAKASENHSSNIEEDVDMVDIENVAYNVDVETTDSNLNV
FT                 NLVDRNCNGQSTSQQCDTRKDLGNSVNILVTATGSNIIPSNRKHASKDNTY
FT                 QPTDMGPYFVFVEGENGNVGKLHPMALGRMLFKESNNLRHEIVNISGIGRN
FT                 RYKIETKTGQSANRLRLLDTFRQKNMEAYIPSFLTTRRGVIRDVDIALSNQ
FT                 EILAEIKSEFLVTDVRRFTKKVIENGVRKYSPHQNVLVHKESNREWCEKVL
FT                 PTPKCVVTFKSQQLPQYVYLCGMRCPVAPYVQSVLQCHNCLRYFHLSSQCR
FT                 SNARCAKCMGAHETSQCSHTGEPKCLHCRGNHTATDRCCPVYQRRRRGPGP
FT                 RRPRRRRGPAAPGGPIVLNVAVMPAVPNAWEPMRLRNAHILESPNVCTAEE
FT                 TTLPLIAVAQFISAGGAGPARAGRAGGAAPRPRAALYEKPVAMNMTEKRLQ
FT                 QGPKHAFMSVPAPKSYKNKPFTRSPYKQGYSDMLYEFQGPQNQYKTTRIRP
FT                 LLWQHLILIEKMPLITSVLQYCRSFFLSKMIQTW"
FT   CDS           join(1991..2443,2380..4596,4731..5594)
FT                 /product="I-4_LMi_2p"
FT                 /translation="MLLKTSSKLIMAFKILQWNARPAISNMESLYREIISN
FT                 PGRICETWFPPTRRIHFKGYSVLRNDRDDGKGGAAMLIRDTVRFKKLDINI
FT                 RTTDYQAVAAEISSPRGVFTIVTIYKPSSCKIRNLSLGQIIDQLNAISFVQ
FT                 ISTHIIHCGDVKPVKRHFICADFNAHHTLWGCEIDDADGKELLTLLETLNL
FT                 VLLNDGSPTMIPKPNTRPSAVDLTLCSVDFNYVTEWMVKRDPLGSDHLPLE
FT                 ITINLPNSSINTTEIIYPNSRWKIQEADWTKYTATVQAHFQSFNNLLGPKD
FT                 AYQQLISIIVDAATTSIPRKKEVIVLKQRPPVWWTPECSRAIAQRKLAYNN
FT                 FRKQQNVENFIAYRKIAARVRRRLKECKKSSWKNFCESLNNNISIADVWKK
FT                 LTFFKNKNATTCQPLNDAWLEDFLNLISPASAAEQPYRPPEQSDYRHPLLV
FT                 PFTYAELKKGIKNAANSAPGKDGIHYQMIENLPDIAIRKLLQIFNQIWMND
FT                 TLIEDWTTQIVVPILKPYKDEEKATSYRPISLSSCIGKTLERLVKNRLEWW
FT                 LESNQILSSSQYGFRKGKGTIDNLNILTADIYDAATRRENVTAVFLDVAGA
FT                 YDNVNIPLLLQKLETIGIPTRMIYGISTFFAERSIWVRFQNKLIGPRRLTT
FT                 GIPQGSILSPILFAVYTNDLERMIPSPVKILQYADDICLYVSASGLDQAVY
FT                 ELSKAMGIVDQTLHSYGLHISPEKSVIVPFTNEAIPSCLNSVRLSGYKIPL
FT                 KSQARFLGVLFDSRLSWVPHIRTVVSTCEKALNLIRSVSRVWWGAHPNVLL
FT                 TLYRALIRSRIDYRCTVYHNAANKHLVLLDKLQYKGLRICLGAMTSSPTNA
FT                 LLVEASEMPLHIRRTMLCDRYILQRMSNTNHPLIKTVLPQSYLNIPVTYID
FT                 SSSKEKGYGQFSLSSYLAEKWAGYTQIYTDGSKMEMKNHTGCAFFCPNNSE
FT                 ERKFQLPGDASIFIAETIAIIEAIKYVRSLKVPKAVIITDAQSVLKSISCR
FT                 NWDKRTNKYTLDLVEHYHQAKKTGQIIEFVWIKSHSGVLYNDKADKLAKEA
FT                 ISSGIPLDIKIPYTDYFQKIRQQAILLWQEEWNESQKTRGRNYASIQTLIP
FT                 RQPWFAKSKYSRKIIVSIIRMRLNHGSFPAHLHRIGLLETPYCQCDGATVG
FT                 DVNHILFQCRRTRKEETNF"
XX
SQ   Sequence 5904 BP; 1967 A; 1192 C; 1180 G; 1564 T; 1 other;
     gagtcatctt tggatagcaa caacaaaaac attgtttctt cgatcgctct cgaaaatctt        60
     gaaaaatata ggtaaaacat tcacagtacg actatattct gtgttgtgtg aagttaaaaa       120
     ctttctaaca agcggctggc gacagattag ttgcttgtag atgcgacagc tcttctgagc       180
     agtcgtttct gctgcgtgcg gcggccgaca tcgcttacat ctagtgttct gtggaactct       240
     tattaagtgt tttagtgaat ctgctggtta tttcgtcatc aaacctatag caaaaagtgt       300
     taaaagcaag gtctctggga ggctactccc agaggctata tttaaaatgg agaatattga       360
     cgagatccca gccgacaccg gccaagggtc agctaaggca ctgcaaatac gccacaataa       420
     tgaaccagcc atgctgcatt cttcaacagt gataacgaca gatcagcatc ccattaaaat       480
     gtgctctcaa gataactgtt ctcaatgtcg tctgatggag gtggaacagc attcttcaca       540
     ttcagttgtc tcgcagtgtg tgaccaacaa cagccagcga caaaagtcaa gacacagatc       600
     accatcatcc caacaggtaa cagctcctga tgcaaatgca ccaaagaagg caaaggcaag       660
     tgaaaatcat agtagtaata ttgaagagga tgtagatatg gtagacattg aaaatgttgc       720
     atataatgtt gatgttgaaa ccacggacag taacttgaat gtaaatttag tagataggaa       780
     ttgcaatggg cagtctactt cccaacagtg tgatactcga aaggacttgg gcaattcagt       840
     gaacatatta gtaactgcca caggaagcaa cataattcct agcaatagga aacatgctag       900
     taaagataat acataccaac caacagacat gggtccatat tttgtatttg tagaggggga       960
     aaatggtaat gttggaaagt tacatccaat ggcccttgga agaatgttat ttaaagaaag      1020
     taataactta agacatgaaa tcgttaatat ctcaggaatt ggcagaaaca ggtataaaat      1080
     tgaaacaaaa actgggcaat ctgcaaacag gttacggttg ctagatacgt ttcggcagaa      1140
     aaatatggaa gcttacatcc ctagttttct aacaacgagg cgaggagtta tccgtgatgt      1200
     tgatattgct ctatctaatc aagagatcct tgcagaaata aagtctgaat ttttagtaac      1260
     tgacgttcgt aggttcacaa agaaagtaat agagaatggt gtgagaaagt actccccaca      1320
     ccaaaatgtg ttgtaacatt taaatcccaa cagcttcctc agtatgtgta tttgtgcggt      1380
     atgcgctgtc ctgtagcacc atacgtccaa tcagttctgc agtgtcacaa ttgtctcaga      1440
     tattttcatt taagttctca atgtcgcagt aatgcccgct gtgccaaatg catgggagcc      1500
     catgagactt cgcaatgctc acatactgga gagcccaaat gtctgcactg cagaggaaac      1560
     cacactgcca ctgatcgctg ttgcccagtt tatcagcgcc ggcggcgcgg gcccggcccg      1620
     cgccggccgc gccggcggcg cggccccgcg gccccgggcg gccctatatg agaaaccagt      1680
     ggcaatgaac atgacagaaa aaaggctaca gcagggacct aaacatgcat ttatgtcggt      1740
     tccagccccc aagtcttaca aaaataaacc attcactcgt agtccgtaca agcaaggtta      1800
     ttcagatatg ctgtacgaat ttcagggtcc acagaatcaa tacaaaacaa cccgtatccg      1860
     cccactcctc tggcagcatc tcatactaat cgagaagatg ccattaataa cttctgtgct      1920
     tcaatactgc agatctttct ttctctcaaa aatgatacaa acatggtaac aacttaggct      1980
     cttattcgta atgctgttga agacttcttc aaaactaata atggccttta aaatactaca      2040
     gtggaatgca cggccagcga tatcgaacat ggaaagtctg tatcgagaaa ttatcagtaa      2100
     tcccgggcgt atttgcgaaa cttggtttcc accaacacgg cgaatacact tcaaaggata      2160
     ttcagtactt agaaatgaca gagacgatgg gaaaggagga gcagccatgt taattagaga      2220
     tacagtaagg tttaaaaaat tggacatcaa tattagaaca acagattacc aggcagtggc      2280
     tgctgaaatt tcctctccta gaggagtatt cactattgtc accatttaca aaccatcttc      2340
     gtgtaaaata cgaaaccttt ctctgggtca gattattgac cagttaaacg ccatttcatt      2400
     tgtgcagatt tcaacgcaca tcatacactg tggggatgtg aaatagacga cgcggatggc      2460
     aaagagttgc ttacacttct tgaaactctc aatttagttc ttttgaatga tggctcccct      2520
     actatgatac ctaaaccaaa tacacgacca tcggccgtcg atttgacatt gtgctctgtt      2580
     gactttaact atgtaacgga atggatggtc aaaagagacc cccttggatc ggatcacctt      2640
     cctctggaaa tcacaataaa tttacctaat tcatctatta atacaacaga aattatttat      2700
     cctaacagta ggtggaaaat tcaggaagct gactggacga aatacactgc tacagtccag      2760
     gcacattttc aatcttttaa caacttgtta ggtccaaaag atgcttacca acagctaatt      2820
     tcaattattg tagatgctgc aacaacttcc attccaagaa aaaaggaagt catcgttctg      2880
     aagcaacgtc caccagtctg gtggacacca gagtgctcta gagctattgc acagcggaaa      2940
     cttgcataca ataacttccg taaacaacaa aatgtggaaa atttcattgc atatcgcaaa      3000
     atagcggcga gggttcgaag acgattaaaa gaatgtaaaa agagctcctg gaaaaacttc      3060
     tgtgagtcat taaataataa cattagtatt gcagacgtat ggaagaaatt aacgtttttc      3120
     aaaaacaaga acgccactac ttgtcagcca ttaaatgacg catggcttga agactttttg      3180
     aatttaatct caccagcttc tgcagccgaa caaccatatc gtcctcccga acagtcagat      3240
     taccgtcatc cactcttggt tccgtttacg tatgcagaat tgaagaaagg aattaaaaat      3300
     gcggcaaatt cggcacctgg caaggatggt atacactacc agatgataga aaatctccca      3360
     gacattgcca taaggaaatt attacagata tttaaccaaa tatggatgaa cgacacacta      3420
     atagaagatt ggacaactca aatagtggta cctatattga aaccttataa agatgaagag      3480
     aaagccacgt cmtatagacc tatttctctt tcttcctgta ttggaaaaac gttagaacgt      3540
     ctggtgaaaa atcgcttgga atggtggttg gaatcaaatc agatcctgtc atcgagtcag      3600
     tatggattta gaaaaggcaa aggcacaata gataatttaa atatcttaac cgcagatatc      3660
     tatgacgcag caacaaggag agaaaatgta acagctgtct ttctggatgt agcgggagcg      3720
     tatgacaatg ttaacatacc tttgttgcta cagaaattgg aaaccattgg aatcccaaca      3780
     cgaatgattt atggcattag cactttcttc gctgaaagaa gcatatgggt tcgttttcag      3840
     aataaattaa ttggaccacg tcgactcaca acaggtattc cacaaggatc tatcctaagc      3900
     cccatactct ttgcagtcta taccaatgac ctggagagaa tgatcccttc tccagtcaaa      3960
     attcttcagt atgcagatga tatttgtttg tatgtgtcag ccagtgggtt ggatcaggct      4020
     gtatatgagc tatcaaaagc aatgggcata gtggaccaaa cacttcatag ctatggctta      4080
     catatttcac cagaaaaatc ggtaatagtt cctttcacaa atgaagctat cccaagttgc      4140
     ttgaatagtg taagactatc tggttacaaa ataccactga aatcacaggc tagatttctt      4200
     ggcgttcttt tcgattctag actgagttgg gtgccacata ttcgaacagt tgtcagcacg      4260
     tgtgaaaaag cattgaacct tattagatcg gtgtcaaggg tgtggtgggg ggctcatccc      4320
     aacgttctcc ttaccctata tcgcgcgttg atacgatccc gtatagatta caggtgcaca      4380
     gtctatcaca atgctgctaa caagcaccta gtgttgttgg ataaattgca gtacaaaggc      4440
     ctacgcatct gtcttggagc tatgacttct tctcccacta atgcactcct cgtggaagca      4500
     tcagaaatgc ccctacatat tcgacgaaca atgttgtgtg atcgttatat tttacaaaga      4560
     atgtcaaata ctaaccaccc actgataaaa acagtgtgaa acgctctgtc gaacagggga      4620
     taacagaaat atggggaaaa agcagtttta tatctacact cgttacgaag tttggaaaca      4680
     tatacaaaat aaaatacatc gaactacagc ccttccaatg ttctatatga ctaccacagt      4740
     cttatctcaa tattcctgta acatacattg actcttccag caaagaaaaa ggatatgggc      4800
     agttttcact ctcatcgtac ctggcagaaa agtgggcagg atatacccaa atatataccg      4860
     atggctcaaa aatggagatg aaaaaccaca cagggtgtgc tttcttctgt ccaaacaatt      4920
     cagaagaaag aaagtttcaa ctaccaggtg atgcttcaat atttatagct gaaacaatcg      4980
     ctattataga ggccatcaaa tatgtaagat ccttgaaagt acccaaggcg gtgataatca      5040
     ctgacgctca aagcgttctg aaatcaatta gttgcaggaa ttgggacaaa agaactaata      5100
     aatacacgct tgacttagtg gagcattatc atcaagcaaa gaagacaggt caaatcatcg      5160
     aatttgtatg gataaagtct cattctggtg tcctatacaa tgataaagca gataaactag      5220
     caaaagaagc aattagtagt ggaatacctt tggacattaa aatcccatat acagactact      5280
     tccaaaaaat cagacaacag gcgattcttt tgtggcagga agaatggaac gaaagccaaa      5340
     aaacaagagg aagaaactat gctagtatac aaacattaat acctagacaa ccatggtttg      5400
     caaaatcaaa atactcaagg aaaataatag tttccattat aagaatgcgt ctcaatcatg      5460
     gctctttccc tgcccatcta cacagaattg gcttattgga gacaccgtat tgtcaatgtg      5520
     atggagcaac ggttggtgat gtaaatcaca tcttgtttca gtgcagacgt acgaggaagg      5580
     aagagacaaa tttttgaagg atctcttgag acttggtcac tgccagccgc tttgcactac      5640
     ttcagtttta ggggacacaa ccaggagagc atatgatgtc atagccagat ttatttcacg      5700
     agaagacatc aaaatttaac agaaaatgga catttaattt atgaactgca gttaatatat      5760
     attacaaaca agtgttagtt cataagtcaa tacagacaaa tgtataaatg tatgctctaa      5820
     aatgtatgtt atcattattg taatttttga tggctaaaaa gtattttcct atgctagaag      5880
     ccaataataa ataaataata aaaa                                             5904
//
ID   I-4_RPr     repbase;    DNA;    INV; 6275 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6275
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3462-3462 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           44..1246
FT                 /product="I-4_RPr_1p"
FT                 /translation="MDQEGGGGGGSDPLKPEASKENLDTDKYNNSFYLNNS
FT                 NQNTNPSTNNSGCMDNNATNSMEMEGSSPQGNQISKTNNRDSNKRSAEVEE
FT                 VISKKVIITRAAPATRNTDNSQRYFTNTVNNRYKTTDEGPYYVNIEGTTGD
FT                 IGKLHRMSFGKWVYQSTFKYKDEILNITVTGKNRLRIEMKSARAANNIITL
FT                 EVFKEKNVIAYIPNYLITVNGVIRGVDRDLEELEILECMQSPIKPIAVRRI
FT                 TKKAIVNNRQIVEKLATCVVTFDSQILPTHVAIYGARCAVEPYVPPLRQCR
FT                 NCLRFRHSEDQCRSRARCENCAGDHRSGECQVDKLDSLVCVHCNGNHKATS
FT                 RDCPVRVMQNNSDKEKVKGRKYSEVVTANRFELLREIDQFPEIERATRPCL
FT                 HIEDQKH"
FT   CDS           join(1833..2408,2402..6136)
FT                 /product="I-4_RPr_2p"
FT                 /translation="MERKCSKIITRHHKNQRKYKITSGQGSYNVAEALHNI
FT                 PNLEEYLNAKLNLNEKSKHKFHKIQPIQLTLKTQQSLDSIRVPSNVEVGRQ
FT                 CLLSSPNSNNKSILIQYSVFTNYINCRVKRNLLRSQNGDDIFIVISIQKCI
FT                 SGAEYIHGGYIYVTICMWVCMYVWVCGWMYIYECVYVCMRTSRNIIVNLIR
FT                 KPKTVNNMNIFQINVRSVYANRDALETYIKINKIDVALLSETWLNPSRKLN
FT                 ITGYSCVRSDRSDGYGGTAILVNNSLIYEEIPVSPQFNNDISQICAITTVI
FT                 RNRRINIVSLYCRPNHSLTLNFWSSLLDAFDSSPLLLCGDFNAHHRSYGCS
FT                 FEDNEGKNIIELVQEYNMCILNDGTPTIIPKPSSSSISAVDLSICSAALAA
FT                 ECLWSVVSEPLGSDHLGLSIKIGAYNSYTQPGVIRRSKWKLHKADWDKYSN
FT                 LVDQQLGGVDTGQDPTEEYSKFVNAMNYAAAKSIPKYTLYAGNKKTVPRPW
FT                 WDDDCXKARLDNIEAFNKYKNQSSLTAFIRSRQATAKCRWMYKNKKREKWR
FT                 QFCGEFNSSTPLKTIWERIKILKSGYKKRAVSAKLDWANDLLHALTPDYAP
FT                 QNLRVQPLATTVHRLEEPFDIIEFNHALKTNKNTSPGVDGIHYPMINKLTD
FT                 NSKAMLLDIYNKIWTNSINIKDWNAHLIVPILKPGKDPNDALSYRPIALTS
FT                 TLGKTFERLLKARLEWWIESEGLLPNCQSGFRRGHNTLDAITSFYNDVLTS
FT                 NSNNNYLLAISVDLSNAYNNVNINILTNKMQEIGTPRRLLLNIVNSLYERA
FT                 MMVEVNGKRLGPRLSGTGLPQGAVLSPLLFNIYTASLRRVLDPEVRIQQFA
FT                 DDFMLYCEAKKAEEALAAIDSAMEQFSNWCDQHGFTINAEKTKAIMFTRHR
FT                 KYVVPRRIKAGKLRIELVNCVKWLGMLLDCKLLWRTHINNLVGKCEAALNV
FT                 IRCITHLNYGADIKTSLMLYRQLVLCQLDYGSFLYGDASHTHLTKVDRLQY
FT                 KALRSCLGAMKSSPTNALLVEAKEFPLRLRRKTLAARYLVNRLPITSYPLS
FT                 KQIPILTSRVLTEQYWKLKKTPILIETFCEIANYLHPLERLDKLPYHLYDY
FT                 KLAITPNKFCCTNFYQFNRNIPDEMNAALLFEKVDKVFPGSRWIFTDGSKN
FT                 TMGVGCAIYDQMDKKSFQFRLKEFTSIYSAELIAVKEAIKYAMSCSSMEKE
FT                 ILIFTDNMAVVTKLCHPAKSHSTIILEIQKMILSDNLLSKIRIIWVKGHAS
FT                 IGGNEVVDALAKEAITSGIAYSEPYLAADIKNLVRRSNYTLWQDEYNSSKT
FT                 VKAKFYSAIQPTIPVKPWYGTLSANRTFYTAIVRLRFNHNRTPSHLFRIGV
FT                 LPDKQCTCGEEAEADSNHLILACPQRSKGRDXLWEAIVENKXELPTNLQQI
FT                 XAGANIVTLEAIVNHIKXNHIXI"
XX
SQ   Sequence 6275 BP; 2252 A; 1205 C; 1248 G; 1563 T; 7 other;
     ttgaaaaagt gaatagagtt taagtttaac taaagaggtc cgaatggacc aggaaggagg        60
     aggaggagga gggtctgacc ccctcaagcc ggaagcttcc aaagaaaatt tagacacgga       120
     taagtacaat aattcgtttt acttaaacaa ctctaaccag aatactaacc ccagtactaa       180
     taactctggg tgcatggata ataatgcaac taacagtatg gagatggaag gttccagtcc       240
     acaagggaac caaatctcaa aaactaataa cagagatagt aacaaacgaa gtgctgaggt       300
     ggaggaggtc attagtaaaa aggtgataat tactcgagct gcacctgcta ctcgtaatac       360
     agataatagt caaagatact ttacgaatac ggtaaataac agatataaaa caacagacga       420
     ggggccgtat tatgtgaata ttgaaggtac aacaggtgat ataggtaaat tacacagaat       480
     gtcgtttgga aagtgggttt atcagtccac attcaagtac aaagacgaaa ttctgaatat       540
     cactgtgacg gggaaaaata gactcagaat agaaatgaaa agtgcccggg cggcaaataa       600
     tattataact ctagaggtat ttaaagaaaa aaatgtaatt gcgtacatac ctaactacct       660
     tattacggta aatggcgtga taaggggagt ggatcgagat ttggaagagc tggaaatttt       720
     agagtgcatg caatcgccca taaaacctat agcggttaga agaataacta aaaaggcaat       780
     agtaaataat aggcaaattg tagaaaaact agcgacatgt gtggtaacat tcgattccca       840
     gatactaccg acccatgtag cgatttacgg agctagatgt gcggtggaac cctatgtgcc       900
     ccctctaaga cagtgtagaa attgtctgag attccggcat tctgaagatc agtgtcgtag       960
     tcgagctagg tgtgaaaact gtgcgggaga tcaccgctcg ggggaatgtc aggtagacaa      1020
     attagattcc ctggtgtgtg tacactgcaa cggcaatcac aaagccacta gcagagactg      1080
     cccagtcaga gttatgcaaa ataactctga taaagagaag gtaaagggaa ggaaatattc      1140
     tgaggtagtt acagcaaata gattcgaact tctcagagaa atagatcaat ttccggaaat      1200
     agaacgagca acgcgaccat gtctacatat agaagaccaa aaacactgaa aaatacgtcg      1260
     cataagaata aaataaattt gctagtgaaa gagaaaagta aaagtaacga aagtaaagaa      1320
     caaattgaca aaaaatatta gaaggccgta acaaagagac ggaccggtca acagatcaca      1380
     ttattaaaca aaatgaaaac aataagcccg gacaaataaa cagaatacaa aataaaccta      1440
     gaaataaaga atacatagaa cacctgcggc aactaattta cagaatacaa aatgaaacct      1500
     ttttaaattc aaattcgatg tttcaggaaa taggcagtac tttagaaaac atacttaaag      1560
     aatatagcca atctgtaaca acccaagata cacgatcaga aacacaccat tacaaagata      1620
     aagtaaaaga gacaatggat ttagatgatc gctcatctga gtccagtaca ttctaagaat      1680
     tctctctctc tctctctctc aaaaaaaaaa aaaaaaattc aatttcattt ctcactctcc      1740
     ctctcaaaat aaataagtaa ataaataaat taaacaaata aataaataaa ctaaataagt      1800
     gaataaatta aataaataaa aagaagtaaa ctatggaaag aaaatgcagt aaaattatta      1860
     caagacatca taaaaaccag cggaaataca aaattacgtc aggtcaagga tcttacaatg      1920
     tagcggaagc tttacataat attcccaacc tggaggaata tctaaacgct aaattgaatc      1980
     tcaacgagaa atcaaagcat aaatttcata aaattcaacc aatacaacta acactaaaaa      2040
     cacaacaatc actagacagt attagagttc cgtcgaatgt agaagttgga cgacaatgtt      2100
     tgctctctag tccaaactct aataataaga gcatcctcat tcaatactcc gtgttcacca      2160
     attatataaa ttgtagagtc aaaagaaatt tattaagaag ccaaaacggg gacgacatct      2220
     ttatagttat tagcattcaa aagtgcatat ccggtgctga gtacatacat gggggatata      2280
     tatatgtaac tatatgtatg tgggtgtgta tgtatgtatg ggtgtgtgga tggatgtata      2340
     tttatgaatg tgtgtatgta tgtatgcgaa cttctcggaa tattatagtt aacctaatta      2400
     gaaaaccgta aataatatga atatatttca aatcaacgta agatcggttt acgctaatag      2460
     agatgctcta gaaacataca taaaaattaa caaaatagat gtagctctgt tatctgaaac      2520
     atggctaaat ccctcgcgta agttgaacat aacgggctat agctgtgtta gatctgatag      2580
     gtcagatggg tatggaggca cggccatcct agttaataac tcactcatat atgaagaaat      2640
     acctgttagt cctcaattca acaatgacat cagtcaaatc tgcgcaatta ctactgtaat      2700
     caggaatagg agaataaata tagtttcgtt atattgccgt ccaaaccact ctttaaccct      2760
     aaatttttgg tcctctcttc tggatgcctt tgattcctcg ccattgcttc tgtgtggcga      2820
     ttttaatgcg catcaccgga gctatggctg ttcattcgaa gacaatgaag gtaaaaatat      2880
     aattgaactt gtgcaggagt ataatatgtg tattttaaat gacggtaccc ctaccattat      2940
     acctaaacct tcctcttctt caatttcggc ggtagatctg tccatatgtt ccgcagctct      3000
     ggcagcggaa tgcttatgga gtgttgtcag cgaaccattg ggatcggacc atttaggttt      3060
     atcgatcaag atcggtgcgt ataactcata cactcagcct ggggttatca gacgctcaaa      3120
     atggaaatta cataaagcgg actgggacaa gtacagtaat ttagttgacc agcagctggg      3180
     aggggtagat acaggtcaag accccacgga ggagtatagc aaattcgtga atgcaatgaa      3240
     ctatgctgca gccaagtcaa tcccgaaata tacattgtat gcagggaaca agaagacggt      3300
     tcctcgacct tggtgggatg acgactgtwc taaagctcga ttagataata ttgaggcctt      3360
     taacaaatat aaaaatcaat cttctctgac cgcttttatc cgcagtagac aggctaccgc      3420
     caagtgtcgg tggatgtaca aaaacaaaaa gagagaaaag tggaggcaat tttgtggcga      3480
     atttaactct agcacccctc ttaaaacaat ttgggaaaga ataaaaattc tgaaatctgg      3540
     gtataagaaa agagctgttt cagctaagct ggactgggcg aacgaccttc tgcacgcact      3600
     gactccggat tacgctccac aaaaccttag agtacaacca cttgcgacta cagtacacag      3660
     actagaggaa ccttttgaca ttatagaatt taaccatgcc ctcaaaacca ataaaaacac      3720
     atccccagga gtggatggca ttcactaccc catgataaat aaactgacag ataacagtaa      3780
     agcaatgtta ttagacatat ataacaaaat ttggaccaat agcattaata tcaaggactg      3840
     gaacgctcat ctcattgtac ctatcctaaa accaggaaaa gacccaaatg acgcgctatc      3900
     ttaccgccct atagcactga catctactct tgggaagaca ttcgaacgtc tccttaaagc      3960
     aagactggaa tggtggattg aatcggaggg acttctccca aattgtcaga gtggattcag      4020
     aagaggccac aacaccttag acgcaattac atcattctac aatgatgtac tcactagcaa      4080
     ctctaacaac aactatcttc ttgcaataag cgttgatctg tctaatgcct acaataatgt      4140
     gaatatcaac attctaacaa ataaaatgca agagattggc accccacgaa gattgctgtt      4200
     aaatatagtg aactcccttt acgaaagagc aatgatggtg gaggtgaatg gaaagcgact      4260
     gggaccgcgc ctctcgggta ctgggttacc tcagggggcg gtgctcagcc ctctcctctt      4320
     taatatctat acagccagtc taagacgggt attggacccc gaggtgcgca tccaacagtt      4380
     cgctgatgac tttatgttat actgcgaggc gaaaaaagcg gaagaagcgt tggcagcaat      4440
     agattcagcc atggaacaat tctcgaattg gtgcgatcaa catgggttca ctataaacgc      4500
     tgaaaagacc aaggcaatta tgttcacgag acacaggaag tacgttgtgc ctagaagaat      4560
     caaggcagga aaactcagaa ttgagctggt taactgcgtg aaatggctgg ggatgctctt      4620
     ggattgcaaa cttctttgga gaacccatat aaacaatcta gtgggcaagt gtgaagcagc      4680
     tctcaatgtc ataaggtgca tcactcatct gaattatgga gctgatatta agacctctct      4740
     gatgttgtac agacagctag tgttgtgcca actggactac gggtcatttc tatacggcga      4800
     tgcctctcac acacacctaa ctaaagtgga caggctccaa tataaagctt taagaagctg      4860
     tttgggcgct atgaagtcct cccctacaaa tgccttattg gtagaagcga aagaatttcc      4920
     actgaggctg aggcgcaaaa cattggcggc aagatatcta gttaaccgac tccccatcac      4980
     ctcctatcca ctttccaaac aaatcccgat ccttacctct agagttctga cagaacagta      5040
     ctggaaacta aaaaagaccc caatactaat cgaaacattc tgtgaaatag caaattactt      5100
     acacccactg gaaagacttg acaaacttcc ttatcatcta tacgattaca aattggccat      5160
     cactccgaac aaattctgct gtacaaactt ttatcaattt aatcgaaaca tcccagacga      5220
     gatgaacgca gctttattat ttgaaaaagt tgacaaagta ttcccgggtt ctagatggat      5280
     ttttacagac ggctcgaaaa atacgatggg tgtaggttgc gctatatatg accaaatgga      5340
     caaaaaatct tttcagtttc gccttaaaga atttacgtcc atctacagtg cggaacttat      5400
     agcagtcaaa gaagccatca aatatgcaat gtcttgctca tctatggaaa aagagatact      5460
     gatatttacc gacaatatgg ctgtggtaac aaagctttgt catcctgcta agagtcattc      5520
     taccatcata ttagaaatcc aaaagatgat cctatcggac aatctcctta gtaaaataag      5580
     gatcatttgg gttaagggtc atgccagtat tggcggtaat gaagtggtgg atgccttggc      5640
     gaaagaagct atcacttcgg ggatagccta ctcagagcca tatttggcag cggatataaa      5700
     aaatctagtc cggcgaagta attatacgct atggcaagac gaatacaaca gcagcaaaac      5760
     cgttaaagcg aaattttact ccgctataca gcccaccatt ccagtcaaac cctggtatgg      5820
     cacgctaagt gcaaatagaa cattctacac agctatagtc cgtttaagat tcaaccataa      5880
     ccgaacgcca agccacctat tccgcatagg ggttctcccg gataaacagt gcacatgtgg      5940
     ggaggaagca gaagctgatt ccaaccactt aattttggca tgccctcaaa gaagtaaagg      6000
     cagggacaam ctttgggaag ccatagtgga aaataagwtg gaactgccga ctaatttgca      6060
     gcagatawtg gcaggggcta atattgtaac tcttgaggca atagtgaatc atattaaaca      6120
     kaatcacatt cwaatataat ttaattatta gaaaaatact ttttaactat aatataattt      6180
     attaaattat tgaagcaata aatacatctc cacactgaat caatggctaa tctgcatgcc      6240
     cagaaggccm aaaaaaaaaa aaaaaaaaaa aaaaa                                 6275
//
ID   I-50_AAe    repbase;    DNA;    INV; 5345 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   09-APR-2019 (Rel. 24.04, Last updated, Version 2)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-50_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5345
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1321-1321 (2011).
XX
RN   [3]
RP   1-5345
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-APR-2019).
XX
DR   [3] (Consensus)
XX
CC   This consensus is generated from 19 sequences with >96% identity.
CC   [3]: Both termini are redetermined.
XX
FH   Key           Location/Qualifiers
FT   CDS           247..1623
FT                 /product="I-50_AAe_1p"
FT                 /translation="MAASSGWDPGLPPTAFNGGPTVPEWMGGVGIGQLQIL
FT                 SLXATDGETKLCPFIVGKSMQDLVGEIENTTTEANGMKYVLRVRDAGQVRK
FT                 LLSMKKLFDGTAVTVELHPVFNKRRCVISCREIQNKTEQELMEWLAKDGVV
FT                 GVKRITRMQDGKPVNTPTVILTLNGTAVPDHIKVGPLRIKTRMYIPDPMIC
FT                 YKCFNYGHSKLRCKGAAKCRNCSKTHDLEGECNAAPFCQHCQGAHGPANRS
FT                 CPVYAMEKEIVRLRFTKGISQEEAKKQIQSGGGSYAAVSSXVQQRLVNART
FT                 STGQSDQLKAKDDLIKQLTETITKLTSRIEELEKKCTSKKEKKRSRKIQIM
FT                 KDEGSGSEMETDSSAKQSAPGQPSVGVSNQVSAVLPKPSVQKHKRHPTTEI
FT                 HAPIVKKASADQSQQSSDLAYPPLNNKSPPNHPGILDQLQTLMDSTRLNSP
FT                 HSQSHNGQHTKPHK"
FT   CDS           1598..5278
FT                 /product="I-50_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANTPNPINSQSSSNQPTQSCLALQWNLFGLKGKLSE
FT                 LQLLISQFNPIALALQETMIPNSTSINFIKGYDLYICENPDNPYKTGTSLA
FT                 IKSDIPHRRISLPSYDSLFAVAIEIDFPLKITLVSIYISPSHNLPIKASLA
FT                 KILDQISSPVLLMGDFNGHSTLWGCHRNDARGSILCQLFDEYGMTLLNDGS
FT                 HTRISLSTGQSSALDLSVSSHSLNSQLSWMVHNDCCGSDHLPIVIQLNRAP
FT                 PVSSCRPRWKYELADWPSYQNEVFSVFSNRAPSSAEEFVQQLFAIATHHIP
FT                 RTNGSPGKKSVPWWNPEVRSAVKLRRKKLRALQKIAKEDRKDSTTFSEFKA
FT                 ARNAARSVIKQAKQDSWDEFISSINPDSTSKELWDKVHRLNGSKSRQPIKL
FT                 KISNQITDNPSIITEHLADHFSQSSSSSNYSDNFISHKNTIEASPPNFNTD
FT                 ENLEYNCDFSYEELDWALHRVHGSSAGPDDVGYPLLKNLPLIGKSILLTIF
FT                 NDIWNRGEIPNSWKEGLVVPIPKPDKDRNNADSFRPITLLNCIGKILEKMV
FT                 NRRLITLLESRGLLDNRQFAFRPDKSTDDYLTELEDIINSHLERGMHGDVV
FT                 SLDLSKAYDRAWRFPILKSFEEWGIKGRMGHYVQSFLQDRRFRVILGNNRS
FT                 ELRCQENGIPQGSVIAPTLFLICIQSLFKDIPPNIFILVYADDITILTFHS
FT                 IKSLSRKRIQSAVLSVSKWADEHGFTISPEKSQLLHISRNRKKMSKLPDIT
FT                 LNNTIIKSQISLKILGIHLDRTLSFRQHLNSVRKSINQRLNLIKVIGSRIP
FT                 CAHRTSILQIVNSWILPKMFYGVGLFSRGGDLVSNKLSPLYNKAVRLASGA
FT                 FATSPILSIMAECGQLPFDYSLTTNVVSKAIRWLSLGGRNDVPLVTRASDL
FT                 FQSLTNQSLPEIAVLPRSKTKSWNQPTPKIDLSLLDQVKAGDPPSIIQSHF
FT                 NKLRSEKYSNHLTIYTDGSVCNGYVGYGIASFSTLPNISSALPPSCSIFSA
FT                 EAYALLKATHLCSTLSDRPIVIFSDSASCLREMDSYSLKHPWLQEAERLAL
FT                 VNRATFCWVPGHSGIHGNEEADRLAGVGRSMNPEDVSIPSIDAQRWTKEKI
FT                 HDSWSTKWYNSRDIALRRLKSSTFPWPDNINPKHRRILTRLRIGHTRLTHS
FT                 YRIDKIDPPTCTSCGTPLTVHHILIDCQCYNTERLACNLDGTLEETLSPPN
FT                 EEALIAFLTTTGLLDHL"
XX
SQ   Sequence 5345 BP; 1547 A; 1421 C; 1058 G; 1316 T; 3 other;
     tcatcattca gttttcaacc accagcgcgc gcggacgtgt attcgagagc gagtattttc        60
     cgagcgattc aacagtgagc agtgcagtga cattccaacc gatcgcggtt gaagaaacag       120
     ttaaccactt ttcagtggta cagtgacagt gacagtaaca gtgatacggt aaagacttta       180
     taccattagt gtgaaaaaag tgatacagtg caaagagagc ctttgcgcga agaagtgcga       240
     gcgagcatgg cggcgagttc ggggtgggac cctgggcttc cccccacggc gttcaatggc       300
     ggtccaacgg ttccggaatg gatgggcggc gtaggcatcg gccagctgca aatcctttcc       360
     ctgtwtgcaa cggacggtga aacgaagctg tgcccattta tcgtgggcaa atcaatgcag       420
     gacctcgtcg gcgaaatcga aaacaccaca acggaagcga acgggatgaa gtatgtgctg       480
     cgagtacgtg acgctgggca ggtgaggaaa ctgctcagca tgaagaagct tttcgacgga       540
     acggcggtga cggtggaact ccaccccgtc ttcaacaagc ggcgctgcgt gatttcatgt       600
     cgcgaaatcc aaaacaagac ggaacaagag ctgatggaat ggctggccaa ggacggagtg       660
     gtcggtgtaa agcggatcac ccgaatgcag gatggcaagc cggttaacac cccaactgtc       720
     attctgacgc tgaacggaac agcagtgccc gaccacatca aggtcggacc actgcgtatc       780
     aagacacgca tgtacatccc ggacccgatg atatgctaca agtgcttcaa ctatggccac       840
     tccaaactcc ggtgcaaagg cgctgcaaag tgccgaaatt gctccaagac ccacgacctc       900
     gaaggggagt gcaacgctgc ccctttctgc cagcactgcc aaggtgccca cggacctgcg       960
     aaccgatcct gcccggtgta cgcgatggag aaggaaatcg ttaggctgcg attcaccaaa      1020
     ggcatttccc aggaagaagc gaagaagcag atccaatccg gcggcggttc ctatgctgcc      1080
     gtcagctcak cagttcagca gaggttggtc aacgcccgta catctacggg acaatcggat      1140
     caactgaagg ccaaagacga cctgatcaag caactgaccg agaccatcac gaagctaacc      1200
     agcaggatcg aggaacttga aaagaagtgc acgagtaaga aggagaagaa gcgatcccgc      1260
     aagatccaga tcatgaagga tgaaggtagc ggctccgaaa tggaaacgga ttccagtgcc      1320
     aagcagagtg cccccggaca acccagcgta ggcgtctcga accaggtaag tgctgtcctt      1380
     ccaaagccaa gcgttcagaa acacaaacgt cacccaacca ccgaaattca tgcccctatt      1440
     gttaaaaaag caagtgctga ccaatcgcaa caatcttctg atcttgctta tcccccattg      1500
     aacaacaaat ctcccccaaa ccaccctggc attctcgacc aactgcaaac tctaatggat      1560
     tccactcgtc tcaactcccc tcactcacaa tctcacaatg gccaacacac caaaccccat      1620
     aaatagtcaa tcgtcctcta accaaccaac tcaatcctgc ctagcattac aatggaatct      1680
     cttcggactt aaaggtaaac tctcagaatt acaattatta atttctcaat tcaaccctat      1740
     tgctttagcg ttacaggaaa caatgattcc caattcaact tcaataaact tcatcaaagg      1800
     ttatgatctg tacatttgcg aaaaccctga taatccctac aaaaccggta caagtttagc      1860
     cataaaatct gatattcctc accgtagaat ttctctccct tcatatgatt ctttattcgc      1920
     agtagccata gaaattgatt tccccttgaa aatcacactg gtttccattt atatctctcc      1980
     ctcacataac ctccccatta aagctagtct tgccaaaata cttgaccaaa tatcatcccc      2040
     tgttcttctg atgggtgatt ttaacggtca ttcaactctt tggggctgcc atcgtaatga      2100
     tgctagagga tcgattttat gccaactctt tgacgaatat ggcatgactc tgctgaacga      2160
     tggtagtcac actagaatca gtctctcaac tggtcaatca tcagctttag acctttcagt      2220
     atcctcccat agcctcaatt cccagctgtc ttggatggtc cacaatgact gttgtggtag      2280
     tgaccatctt cctattgtta tccaactgaa tagagctcct cctgtgtctt cctgccgtcc      2340
     tcgttggaaa tatgagctgg ctgactggcc tagctatcaa aacgaggtct tctcggtatt      2400
     ttccaacaga gccccttcct cagctgagga attcgtccaa caattgtttg ccatagctac      2460
     gcaccacatt cccagaacca atggttctcc cggtaaaaag tcggttccat ggtggaaccc      2520
     cgaggttcgt tctgcagtca aactccgtcg caaaaaacta cgtgctcttc agaagattgc      2580
     aaaggaagat cgtaaagact ctaccacttt ttctgaattc aaagctgcta ggaatgcagc      2640
     cagatcggtc attaaacagg ccaaacagga cagctgggac gaattcatct cctcaattaa      2700
     ccctgacagt acttcaaaag aactgtggga caaagtccat cgattaaacg gtagtaaaag      2760
     tagacagcct attaaactaa aaatcagtaa tcaaatcact gacaatcctt caattataac      2820
     cgaacatctt gctgatcact tttcccaatc atcttcctcc tccaattact ctgataactt      2880
     catttcccac aaaaacacca tagaagcatc tcctcccaat ttcaatactg atgaaaatct      2940
     agagtataac tgtgattttt catatgaaga gttagattgg gctttacaca gagtccacgg      3000
     gtcatcagct ggcccggatg atgtaggtta tccacttctc aagaaccttc ccctaatagg      3060
     taaatccatc ctccttacaa tattcaacga catttggaac cgcggtgaaa tccctaactc      3120
     ttggaaggaa ggtttagttg ttcccattcc caaacccgat aaagatagaa ataatgccga      3180
     cagtttccgc cccattactt tattaaactg tattgggaag attcttgaga aaatggttaa      3240
     cagacgactc atcactcttc tggaatctcg tggtttacta gataatcgac agtttgcttt      3300
     ccgcccagat aaaagcactg atgactatct taccgaactt gaggatatca ttaactctca      3360
     cctggaaagg ggaatgcatg gtgacgttgt atcccttgac ctgtcgaaag catacgaccg      3420
     tgcgtggcgt tttcccattc tcaaatcttt tgaagaatgg ggaatcaaag gtcgcatggg      3480
     tcattacgtc caaagcttcc ttcaggatag gagatttagg gtcatcttag gcaacaaccg      3540
     atctgagttg agatgtcaag aaaatggtat tcctcaaggt tcggtaattg ccccaacact      3600
     cttcctcatc tgcatccaat cgctattcaa ggacattccg cccaatatct tcatactagt      3660
     ctatgctgac gacatcacca tactcacctt ccacagcata aaatctctgt ccagaaaacg      3720
     aattcaatca gcagttctga gtgtttcaaa atgggctgac gaacacggtt tcactatatc      3780
     ccctgaaaaa tcccaacttc tacacatcag tcgcaataga aaaaagatgt caaaactccc      3840
     cgacatcact ttaaataata caattataaa atcccaaata tccctcaaaa tccttggtat      3900
     tcatctcgac cgaaccctca gcttcaggca gcaccttaat agcgtccgca aatccatcaa      3960
     ccaaagactt aatctcataa aagtaatcgg ctcccgtata ccttgcgccc accgaacatc      4020
     tatcctacaa atcgtcaaca gttggattct acctaagatg ttctatggtg ttggcctctt      4080
     cagcagaggt ggtgatttgg taagcaacaa attaagccca ctgtataata aagctgtccg      4140
     tctagcttca ggagcttttg ctaccagtcc catcttatcc attatggctg aatgcggaca      4200
     actccctttt gactactcct taacaactaa cgttgtttcc aaagctatca gatggctgag      4260
     tctggggggt cgaaatgacg tccccctggt cacacgagcc tctgacttat tccaatccct      4320
     cacaaaccaa tcgcttccag aaatagccgt attacctaga tccaaaacca agtcatggaa      4380
     tcaacccacc cccaaaatag atctctctct tctagatcag gtcaaagctg gtgatccacc      4440
     ttctataatt caatcacact tcaacaaact ccgctctgaa aaatactcca accacctaac      4500
     aatatataca gatggttctg tatgtaatgg ttatgttggt tatggtattg ctagcttctc      4560
     tacactccca aacatcagtt ctgccctccc cccatcttgt tccatattta gtgccgaagc      4620
     atatgccctt ctaaaagcca ctcacctctg ttccacccta tcggatcgtc ccatagtaat      4680
     cttcagcgat tctgctagtt gtcttcgaga aatggattct tactccttga aacacccctg      4740
     gcttcaggag gccgaaagac ttgctttggt caacagagcc accttctgtt gggtgccagg      4800
     tcactctggc atccacggta atgaggaggc tgaccggtta gcaggtgtag gtcgcagcat      4860
     gaacccagag gatgtttcta ttccatccat cgacgctcag agatggacaa aggagaagat      4920
     ccatgactcc tggagcacta aatggtacaa cagcagggat atcgcwctca gaagattaaa      4980
     atcatccact ttcccctggc ccgataacat caaccccaaa catcgtcgca ttttaacccg      5040
     tttacgaatt ggtcacaccc gtttaaccca tagttaccgt attgacaaaa tagatccccc      5100
     tacttgcaca tcttgcggta cccccttaac tgtccaccat attttgattg actgtcaatg      5160
     ttacaacact gaacgcttgg cttgtaattt ggacggcacc ctggaagaga cgttatcgcc      5220
     accaaacgag gaagctttaa tcgcattttt aaccaccacc ggattactgg accaccttta      5280
     aaaacctgcg ataagggacg aatgaccttc gggttaaagt ccctctcaaa caacaacaac      5340
     aacaa                                                                  5345
//
ID   I-51_AAe    repbase;    DNA;    INV; 7023 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-51_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7023
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1322-1322 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           568..1944
FT                 /product="I-51_AAe_1p"
FT                 /translation="MASTSGGDPGGSNRRTLPLYMDPHNEFGAVTTLLMTG
FT                 KDGTNLPIEPFIIGKSLEDWAGPIEDSRSVSRCTKYVIRTRKPAQVEKLLK
FT                 MTHLCDGTEVSVVLHPTLNISRCVISAYDVIEKDEQEIVENLSSQGVIKAR
FT                 RILKSNKDRTAAIILTFNKSVYPANVKIGVLNFKTRPYYPNPMLCFSCFEY
FT                 GHPRLSCTNSKRCYNCSQDHEEREKCEDAPFCRNCEKDHRPTSRQCPIYKK
FT                 EMEVIKTKIDCNLTEADARKRVEAGNGSYARIAAQPRLDQIKLSDLSTQLA
FT                 EKQKKIEELESSLAHVTQVLEAKFNDIVTKNAEKDTQIKELLADLKQRDER
FT                 IAKLEAGNQGMKKYIEDIKMRARTNSQSSEPSHSKSNNKKHKTKRTTPSNE
FT                 NDNERASRSNMSPPPKKQPNTVRSPILTRNTINKSRNEAVDPSETDDPMHC
FT                 DSSNSTDYGPSRTQ"
FT   CDS           1925..6916
FT                 /product="I-51_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDQVEPNNLALRSTIECTANNQQHTVNSNQFLLGHQH
FT                 SRFEECECAVPHSLLKEAQQEGKSIRDAIPQPVDGGPYCSAGSSSSRTNDI
FT                 LSTNTIQLLDHPSLNNPKNPTPNSSHTYNPNSDQISQNSKIINRNESSAKL
FT                 STVARQKSIPIKGSYRTNRINNSSDNQQISPINGGQDIRITNSSSEGFGVG
FT                 SVNPRQVPALALTTDVPSSWIEPVAAAGAGSLSVSQASNIISSSLSSNDAA
FT                 EFSTATSRQSTSRFSSTDANPVNQDIRIINSSSGGVGVGSVNPRQVPALAL
FT                 TTDVPSSWIEPVAAAGAGSLSVSQASNIISSSLSSNDAAEFSTATSRQSTS
FT                 RFSSTDANPVNQDIRIINSSSGGVGVGSVNPRQVPALAPTTDVPSSWIEPV
FT                 AAAGAGSLSVSQASNIVSSSLSSNDAAAFSTATSRQSTSRSSPNDANLAPI
FT                 NQHIHSVAESESSNPSGGNNQTFVLQWNIRSVWRNYAELRKIVDDSNPAII
FT                 CLQEMMTTRTNNLLSNNYAWSIRNRPESMGSGISGLGVRRDIPHEFINFAS
FT                 DLLVCIARIGKPWNLTIVSIYVPQSVSSDALTSKLTDIVQSLEPPFLLCGD
FT                 FNASHEVWGSSRSNNRGRSLLEWAVDNNLISLNNGSPTHYHASSGTFSAID
FT                 VSFFSNCLASKFSWICDDDLHGSDHFPISIQLNNPLPTIQYTKRWIYKDAD
FT                 WGKFETIVANKIPPNTVTSIEEITQAIHEAALESIPRTKGMPGKKRQIWWN
FT                 DEVKQVVKNRRKALRKLRKLKDDSPGKEAAKQQFNEAKREARRMIEEAKTN
FT                 SWTSFQEIFTTKSSTSQLWQSFNKLSGKRRTNKLGMIINGEHNSNPTAIAD
FT                 FLVEFFASTSANEGYSEEFLRKKLLREGTPLNLISNNVSPMDQKFSIQELF
FT                 QALESANGTSTGVDNIGYPMIKHLPFHCKLTLLEAFNHIWMTGDIPLTWKE
FT                 SIIIPIPKPGESANGANGFRPISLTSCMAKTMERMVNRRLMDFFEFNKRLH
FT                 PRQFAFRKGKGTTCYFAELDEFITEAAKKGEHCEVVTLDIKKAYDKVWHRN
FT                 ILDTIIENNLGTNMNKFLNNFLQHRSARVSFAGALSKSKHLENGVPQGSVL
FT                 SVSLFLLAMNSVFSIVPKNVQVFLYADDIILVAAGKRVSYLRKRLQKAVNL
FT                 VDKWATDIGFDLSSSKSSTMHCCKLKRHRRWHLEGAKIILNDNELDKPKVT
FT                 RILGVLFDRKCTFNAYTKHVKEECGSRLNLLKAISKGADRKTLLYIGNSIV
FT                 ISKLFYGMELLGNVNIEKLSPVYNQVVRTASGALKTSPILSLMVESGCLPF
FT                 QHAATLTIIKKACATLEKSASGTSNLWVKADTLFQTLTGKPLPKLSKLHTM
FT                 FHRAWNKKKPFIDWTVKSKIRAGQTPHLAQDIFRRLVSENYENFDHWYTDG
FT                 SLAEGKVGYGVIGPGIRIEQSLPEQCSVFTAEAAALAHAAHRAKTRSVIFS
FT                 DSASSLQALESGKSRNSYIQKIEKVIEDKDLRFCWIPGHSRIPGNEEADSA
FT                 ANCGRHKPVGEEDVPAQDIKVWVTREIWRAHQSAWDQAPRNNLKIVKPNVG
FT                 RWIDRSNRKEQIVLTRLRIGHAWFTKRYLFEKNPREKCTLCDRYLSVHHVL
FT                 ASCQSYNAARRELGISNELRRILQNEKTTETKLISFTKKIGIFKCI"
XX
SQ   Sequence 7023 BP; 2256 A; 1632 C; 1505 G; 1630 T; 0 other;
     cagttcgtgt tgagcaaccg aagtgtacgg tcgttcttca ataaatcgga gctaagaccc        60
     ctgttggttc gtacctcgtt aatatctcgg agcgctagcg ctacgccttc cgacgaaagg       120
     atttcgtgag tttagtgtta ttggtcaacc taaccgcgaa gttttgccac ctctaaccgc       180
     gattttattc gcgagcgggg ttacctgtcg taccaggcga tcatacgcgt gaaaagtgtc       240
     ggggtattgt aaaccacctg tttgggcgac aaagcgtccc caccttgtgc atgccgtgta       300
     tgtgaactac gaaggaccaa gctactcctt aatgctatag tggttgtgaa gtgcaagaag       360
     tagagtgcaa gaagacatct gtaggcgata agcgacgaac ttgatcgcta ctgagtcacc       420
     agaagagcat cgttataaaa ggtagggtca gattttccaa ttcctaattt ccaattccct       480
     ccgcgctggg gtaggtagtg ggtgaccact atcactttat gcggtatttg atctcgctga       540
     agctgttggt atcaagttaa gtgttgaatg gcctccacca gtgggggcga cccaggaggg       600
     tcaaatagaa gaactctgcc gttgtatatg gacccccaca acgagttcgg tgctgtgaca       660
     accttgctaa tgaccggtaa agatgggaca aatctcccaa ttgaaccgtt catcattggg       720
     aaaagccttg aagactgggc aggaccgata gaagactcca gaagtgtaag cagatgtact       780
     aagtatgtta tacggacccg gaagcctgcg caagttgaaa aactcttgaa gatgacgcat       840
     ctctgtgacg gaactgaagt ttcagtagtg ttgcatccaa cgcttaacat tagccgctgt       900
     gtgatttccg cctatgacgt gatagaaaag gacgaacaag agattgtgga gaacctaagc       960
     agccaaggag tgatcaaagc ccgtcggata ttgaaaagca acaaagatag aactgcagcc      1020
     attatcttga cgttcaacaa gagcgtatat cccgcgaacg ttaaaattgg agtactcaac      1080
     ttcaaaacac gcccatatta cccaaacccg atgttatgtt tcagctgctt tgaatacgga      1140
     catcctcgtt tgagctgtac gaattccaaa cgctgctaca actgctcgca ggatcacgaa      1200
     gaaagagaaa aatgcgaaga cgcccctttt tgtagaaact gcgaaaaaga tcaccgaccc      1260
     accagtcgac aatgcccaat atacaaaaaa gagatggagg tcatcaaaac aaaaatcgac      1320
     tgcaacctga cagaggctga tgcgagaaag cgtgttgagg cgggaaatgg cagttatgct      1380
     cggattgctg cacagccgcg attggatcag ataaaactaa gtgatttatc gacccaactt      1440
     gcggagaaac agaaaaaaat tgaagaactt gaaagtagtc tggctcatgt cactcaagta      1500
     ttggaagcca aatttaacga tatcgttacc aagaacgctg agaaagatac tcaaataaag      1560
     gagttgctcg ctgacttgaa acaacgagac gaaaggatcg ccaagttaga ggcgggaaac      1620
     caaggcatga aaaagtacat cgaggatata aaaatgagag ctagaactaa ctcgcagagc      1680
     agtgaaccga gtcactcaaa gagcaacaac aaaaagcata aaacgaaacg aacaactccc      1740
     tcgaatgaaa atgacaatga gcgtgcctcc aggtcaaata tgtccccacc accgaaaaaa      1800
     caaccaaaca cagtgagaag tcccatcttg accagaaaca ccatcaataa atccagaaac      1860
     gaagcggtag acccatccga aacagacgat ccaatgcatt gtgactcttc caactccacc      1920
     gattatggac caagtagaac ccaataattt agcgttacga tcaaccatcg aatgcaccgc      1980
     aaacaatcag cagcatacag taaactccaa tcaatttctg ttaggtcatc aacacagccg      2040
     gtttgaggag tgcgaatgtg cagtaccaca ctcacttcta aaagaagcgc aacaggaagg      2100
     aaaatccatc cgggacgcca taccccaacc cgtagatgga ggaccctact gttcggccgg      2160
     ctccagttct tcaagaacca atgacattct ttcaacaaac acgatacagc ttttagatca      2220
     tccttccctc aataatccca aaaaccctac accaaactcc tctcatacat acaatccaaa      2280
     ttctgaccaa attagccaaa acagtaaaat aataaacaga aacgaatcaa gtgcgaaact      2340
     atcgaccgtt gccagacaga agtcaatacc aatcaagggt agctatcgaa caaataggat      2400
     aaacaattca agtgacaacc aacaaatatc accaatcaat ggtggtcaag acattagaat      2460
     aaccaattca agttcagaag gcttcggagt ggggtccgta aacccccggc aagtccctgc      2520
     actggccctg accacagatg ttcccagttc atggattgag cctgtggcgg cagctggtgc      2580
     ggggagcttg tctgtgtctc aggcaagtaa catcatatct tcttctctaa gctcaaatga      2640
     tgccgcagaa ttctccacag caacctctcg acaatcaaca tctcgctttt catcaaccga      2700
     tgccaatccc gtcaaccaag atattaggat aatcaattca agttcaggag gcgtcggagt      2760
     ggggtccgta aacccccggc aagtccctgc actggccctg accacagatg ttcccagttc      2820
     atggattgag cctgtggcgg cagctggtgc ggggagcttg tctgtgtctc aggcaagtaa      2880
     catcatatct tcttctctaa gctcaaatga tgccgcagaa ttctccacag caacctctcg      2940
     acaatcaaca tctcgctttt catcaaccga tgccaatccc gtcaaccaag atattaggat      3000
     aatcaattca agttcaggag gcgtcggagt ggggtccgta aacccccggc aagtccctgc      3060
     actggccccg accacagatg ttcccagttc atggattgag cctgtggcgg cagctggtgc      3120
     ggggagcttg tctgtgtctc aggcaagtaa catcgtatct tcttctctaa gctcaaatga      3180
     tgccgcagca ttctccacag caacctctcg acaatcgaca tctcgctctt caccaaacga      3240
     tgctaattta gctcccatca accaacatat ccattccgta gcagaatcgg aatcatcaaa      3300
     cccatctgga ggaaacaatc aaacttttgt gctacagtgg aacataagaa gtgtatggcg      3360
     gaactatgct gagctccgca aaatcgtcga tgacagcaat ccagcgataa tttgtcttca      3420
     agaaatgatg acaaccagaa caaataacct actcagcaac aactacgcat ggtcgatccg      3480
     caatcgaccg gaaagcatgg gcagcggtat cagcgggctt ggcgttcgtc gtgatattcc      3540
     tcacgaattc atcaactttg catctgatct tctcgtatgt atcgcaagaa taggtaaacc      3600
     gtggaacctc acaatagtgt caatttacgt cccacaatcc gtaagtagtg acgctctcac      3660
     aagtaagttg actgatattg tacaatccct tgagccgcca tttctcttgt gtggcgactt      3720
     caatgcttct cacgaagtgt ggggtagttc acgttctaac aatcgcgggc gatctctctt      3780
     ggaatgggca gttgataaca atctcatatc actcaacaac ggttcaccaa cgcactatca      3840
     tgcttcttcg gggacgtttt ctgcaatcga cgtctcgttt ttctctaatt gtctcgcatc      3900
     caagttttct tggatctgcg acgacgactt acatggaagt gatcatttcc caatttcaat      3960
     tcaattgaac aatccgctcc cgaccatcca atatacgaaa agatggattt acaaggatgc      4020
     tgactgggga aaatttgaaa caatagtggc taataaaatc cctccaaaca ccgtcacctc      4080
     tatagaagaa attacacagg ccattcacga agcagcattg gagtccattc ccagaactaa      4140
     aggtatgccc gggaagaaac gacaaatttg gtggaacgat gaagttaagc aagttgtgaa      4200
     aaaccgaaga aaagccctgc gaaaactgcg aaagctgaaa gacgacagtc ctggtaaaga      4260
     agcagccaaa caacagttca acgaggctaa gcgggaagcg agaagaatga tcgaggaagc      4320
     caaaacgaat tcctggacaa gttttcagga aatattcaca actaagtcta gtacttcaca      4380
     gctatggcaa agctttaaca aactcagtgg taagaggcgc actaataaac taggaatgat      4440
     aatcaacgga gaacacaata gcaaccctac tgctatagcc gactttcttg tagaattttt      4500
     cgcttctacg tcggctaatg aaggatactc cgaggagttc ttgcggaaga aactgttaag      4560
     agaaggtacc ccacttaatc tcatttcaaa caacgtctct cctatggacc aaaagttctc      4620
     cattcaagaa ctttttcaag ctcttgaaag cgcaaatgga acttcaacgg gcgtggacaa      4680
     cataggttat cccatgataa aacatctgcc ttttcactgt aaactaaccc tcctcgaagc      4740
     cttcaaccat atctggatga ctggggatat cccattgaca tggaaggaga gcattattat      4800
     tccaattcca aaaccgggag aatctgcaaa tggtgctaat ggttttcgcc ccatttcact      4860
     gactagttgc atggccaaga caatggaaag gatggtaaac cgccgcttga tggatttctt      4920
     tgagttcaac aaaagactcc acccgcgtca gttcgcgttc cgcaaaggaa aaggcactac      4980
     ttgctatttc gccgaactag atgaattcat cacggaagcg gcgaagaaag gagaacactg      5040
     cgaagtcgtc acccttgaca ttaagaaggc ttacgataaa gtttggcaca gaaacatctt      5100
     agatactatc atcgagaaca atcttggaac aaacatgaac aaattcctca acaattttct      5160
     tcagcaccga tcagccaggg ttagttttgc aggcgcccta tcaaagtcta aacacctgga      5220
     aaatggagtt cctcaagggt ctgtattatc agtttccctg ttcttattgg ctatgaactc      5280
     ggtgttttct atcgttccaa agaatgtgca agtctttctg tacgcagacg atataatcct      5340
     agtggctgca ggaaaacgcg tcagttacct gagaaaacga ctccaaaaag cggttaatct      5400
     agtagacaaa tgggctacag atatcgggtt cgacttatct tcttctaaat catccacaat      5460
     gcactgctgc aaactaaagc gtcaccgtag atggcatctt gagggcgcca aaatcattct      5520
     aaacgacaat gagctagata aaccgaaggt aacaagaatc cttggagtgc tatttgaccg      5580
     gaaatgcacc ttcaatgcat atacgaagca cgtaaaagaa gaatgcggaa gtcgactaaa      5640
     cctactcaaa gctatatcga aaggtgcgga tcggaaaaca ttgctgtata ttggaaactc      5700
     gattgtaatt tcgaaacttt tttacggaat ggaactatta ggaaatgtaa atatagaaaa      5760
     actttctccc gtatacaatc aagttgtcag aacagcatct ggtgctctaa aaacatctcc      5820
     aatactttct ctgatggtgg aaagtggatg cctcccattt cagcacgcag caacactgac      5880
     aatcatcaaa aaagcgtgtg caactcttga aaaatctgca agcggaacta gcaatctatg      5940
     ggtcaaagcc gatactttat tccagacgct aacaggaaaa ccattgccaa aattaagtaa      6000
     actgcataca atgttccaca gagcgtggaa caagaaaaaa ccttttatag actggactgt      6060
     aaaatcaaaa atcagagctg gacaaacacc tcatctggca caggatattt tccgccgact      6120
     agtttcggaa aattatgaaa actttgacca ttggtacaca gatggatcac ttgcagaagg      6180
     aaaagtgggg tatggagtta ttggacctgg cattagaatt gaacaaagtc ttcctgaaca      6240
     atgttcagtg ttcacggcgg aagctgcagc tttggcccat gcagctcatc gtgctaaaac      6300
     caggtctgta attttcagtg actcagccag ctcccttcaa gcgttggagt cagggaaatc      6360
     aagaaattcg tacatacaaa aaatcgaaaa agttattgaa gacaaagact tgaggttctg      6420
     ctggataccg ggtcactcta ggattccagg aaatgaagaa gcggacagtg cagcaaactg      6480
     cggcagacac aaaccagttg gagaagaaga tgtaccagcg caagacataa aagtatgggt      6540
     tacacgagaa atctggcgtg cacatcaatc agcctgggac caagcgcctc ggaataattt      6600
     gaagatagtt aaaccgaacg ttggaagatg gattgaccga tcaaaccgca aggagcaaat      6660
     agtcttgact agacttcgta ttggtcacgc ctggttcacg aaacgctacc tctttgagaa      6720
     aaatcctcgt gaaaaatgca ctctctgtga ccgctacctg tccgttcatc atgtattggc      6780
     atcatgccag tcgtacaacg cggcgcgtcg agaactagga attagtaacg agctacgaag      6840
     aattcttcag aacgaaaaaa cgaccgaaac caaactcatt agctttacga aaaagatagg      6900
     aattttcaag tgcatataat atgtaacagt tactaatgtt tatttttcaa ataaagtatt      6960
     caatagagac gaatgcccct tctgggtaaa gtctctctaa acaaaaaaaa aaaaaaaaaa      7020
     aaa                                                                    7023
//
ID   I-52_AAe    repbase;    DNA;    INV; 6324 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-52_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6324
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1323-1323 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           164..1501
FT                 /product="I-52_AAe_1p"
FT                 /translation="MSGRSPGPSGGSAGAICRSNVPEWMLGPDDLGQVMVL
FT                 ILRRKQNVNSQQDATPFDSFIVGTSIQLKVGVKEARTIQASCEGRGTRYIL
FT                 RTSSKTIYEKLIKITQLTDGTEVEIVPHPTLNMVQGVVYDPDTINKEETVI
FT                 LDNLKAQGVQSVRRIKKRVNGVLKNTPLLVLSFHGTIVPNHVFFGLLRIKV
FT                 RVYYPSPMMCFNCGIYGHSKKSCQQPGVCLRCSASHEIPEGEQCTNPPSCL
FT                 HCKSGHPTTSRDCPKYKQEEKIVRLKVDRGISFVEARRIYAEENKQGTIAE
FT                 VVQEQVQQQLAAKDQVITSLQKQVAVLTKELVALKQTLKAYSRSQSSSPLK
FT                 QNETVFQKPAPKTTPSKAVQQNATAQHDRLSRKDQTLLSFSSGQKELNNNT
FT                 QDHGIHTRSRSGKRQMEISPTERTSHRGKRISASSVTNSTLTYTEKNNGPE
FT                 T"
FT   CDS           1197..6218
FT                 /product="I-52_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKLYSKNQHRRLLQVKPFSRTQQHNTIDYRERIRHSS
FT                 LFHLVKRNSTTIRKITAFTHAAEAANAKWRYRPLRELVIGVNASQHHPSRI
FT                 AHSPTPRRIMDPKPDEKIYWRTQNIDPGMKTDKKTDKRLGQRASNTTDQTR
FT                 TLLPPLTAEDYDKIHNLTSIPTTSKQHKPQTDSPSARPPTSTLTRDVPEQS
FT                 DEPLAAVDVGCPLYRASTFLHISPQKQPNSTLIFTNPGSWESNCTEDVTTN
FT                 TTYATDIIPASTAINNHDSPLTVSTDLHRFDSPRARPPTPTLTRDVPVYSD
FT                 EPLAAVGVGRPHPWASITSNLHHEQFEANIFPTYSGNNANGKRRGSPIKVI
FT                 QRMNNSSKPPLPKTNHDSPRARPPTSTLTRDVPEQSDEPLAAVGVGRSHHR
FT                 ASIITHSPSEESAISVVYPQXTASDEEHATSGMDLSCVVAEQGQQYHITEL
FT                 HSPSXASTDSEGCLPKPGKTTPNIAIQWNINGLRSHLGELQLMIAKYQPFV
FT                 ICLQETNADGSKLGSDSLGPNYQLLLSQCSPHGRQGAGMAIKKGTPFQQIS
FT                 FRTKLQAVAIQLQAPTSMTIVSVYLPPKDKNAVGLLGDLLNELPKPILILG
FT                 DLNAHHPAWGSRITNTISEAKKRGDKILELVLQHDMLILNNGTHTRIDPST
FT                 GASQALDVTICSTSHASKFHWKTLMEFSGSDHLPTMISTPGNTNEPKRRPN
FT                 WILEKANWDLYEKITSETLHPKSILTVDEFTNRIISAANSSIPKTTGNVGR
FT                 KSVVWWNEEVETVIKARRKCLRALRRLKEDDPRKPAALKRFHDARSVCRKT
FT                 INDAKQKSWEDLVESINPDTPASQVWNSVNRLQGKRKNTTITLNLPTGHTN
FT                 DGEKIANALADEYQRKSSNENYSAEFRKKHKDNNCTAFKNQRPSLHKNYNV
FT                 DFTIEELMWALNRRAGSSTGDDNISYVLIQRLPFSSKIALLMLFNRVWDSG
FT                 SFPAQWKVGNIIPIPKPEADRSKPEGYRPITLLSCVGKLFERMVNRRLITE
FT                 LETTGRLDPRQHAFRAGKGVDSHFAELESFISLENDEHVEIVSLDISKAYD
FT                 TTYRPAILRTLTEWRICGRLMNIVSSFLCDRYFQVVANGSLSTLRKAENGV
FT                 PQGSTLSVTLFLVAMQPIFEVIPSEAQILLYADDVILIVKGRNHGTIRKTL
FT                 RKAVAAAVGWAASVGFSIAPTKSKLLHACLIPHRKRGRAIKINQTPIPLVR
FT                 SLKILGIILDSKFNLLKHFRTVKENSGKKIHLLRILGYRIKRSSRVTLLNI
FT                 GFALIVSKIFFGLGLTSLNIEAMQRILGPIYNEVVRRATGAFPTSPVISIM
FT                 SEAGCLPFNLALIQRLGQLAIRLLEKYETDVEYPLVKRARDIILDTTGWSL
FT                 PVVCKLLRLTDRAWYASPPKIDNHLKNSIRAGASKETVLPMFKSFISNRYP
FT                 THEQVFTDGSKDNNNVGAGIATSDRHISFRLPDDCSVFSAEAFALKAAVSN
FT                 IQAGKKTIILTDSASCIDALKKGWSKHPWIQSIEKMTENQDITFSWIPGHS
FT                 GIRGNDKADEAAKQGRNETKLDIPLPAQDVLRSMRNKIWEVWQTEWHRTQV
FT                 HLRQIKASPCKYPDRKCPSEQRVLSRMRIGHTRITHVYLMTNSPPPMCNFC
FT                 GVQLTVQHFLVECRGFEQNRERCGINGSTAEILAYNTARETLLIKFLKDCN
FT                 LFNEI"
XX
SQ   Sequence 6324 BP; 2040 A; 1546 C; 1327 G; 1408 T; 3 other;
     cgatataatc acccatacac acatctgaac tgttgtgtag gcagtgttgt gatccgagtg        60
     ctaattggtg acaaagagga aataaaaacg atccttcgtg aatacgttcc ataatttttg       120
     gaggaccaac ggtgaagtga atagttcttg gcatctcgaa taaatgtcag gcaggtcccc       180
     tggcccctcc gggggctcgg cgggagcgat atgtcgaagc aacgttccag aatggatgct       240
     tggtcccgat gatcttggtc aggtgatggt actcattttg cgtcggaaac agaatgttaa       300
     tagccaacaa gacgccacgc cgttcgattc gttcatagtg ggcacttcaa tccaactgaa       360
     agttggtgtt aaggaagcca gaacgattca agcatcttgt gaaggacgag gtacacgtta       420
     cattctacgc accagctcta aaaccatcta tgagaaactc atcaaaatca cacagttaac       480
     cgatggcact gaggtcgaaa tagttcctca ccctacactg aacatggtcc aaggtgtagt       540
     atacgaccca gacacaatca acaaggaaga aactgtgata ctggacaacc tcaaggctca       600
     gggcgtacaa tcagtccgca gaataaaaaa gcgagtgaac ggtgtcttga aaaacacccc       660
     cttgttggtt ctctctttcc acggcacaat tgtacccaat cacgtgtttt tcggattact       720
     gcgcatcaaa gttcgtgtat attacccctc cccgatgatg tgcttcaatt gcggtatcta       780
     tggtcactca aaaaagtcct gccagcagcc tggagtttgc ttacggtgtt ctgcgtcaca       840
     tgaaatcccc gaaggagaac aatgtacgaa tcctcccagt tgtctccatt gcaagagcgg       900
     acatcccaca acatcgcgtg attgcccgaa gtacaagcaa gaagaaaaaa tagtgcgtct       960
     gaaagttgac agaggcattt catttgttga ggcgaggcgt atatatgcag aagaaaataa      1020
     gcaaggaacg atcgctgaag tagttcagga gcaagttcag caacaactag ccgctaaaga      1080
     ccaagtaatc acctctttac aaaagcaagt agctgtacta acgaaagagc tcgttgcact      1140
     aaagcaaact ctgaaggcat actcacgtag ccagtcctcc tcaccactca aacaaaatga      1200
     aactgtattc caaaaaccag caccgaagac tactccaagt aaagccgttc agcagaacgc      1260
     aacagcacaa cacgatagat tatcgcgaaa ggatcagaca ctcctctctt tttcatctgg      1320
     tcaaaaggaa ctcaacaaca atacgcaaga tcacggcatt cacacacgca gcagaagcgg      1380
     caaacgccaa atggagatat cgcccactga gagaactagt catcggggta aacgcatctc      1440
     agcatcatcc gtcacgaata gcacactcac ctacaccgag aagaataatg gacccgaaac      1500
     ctgacgagaa aatatactgg agaactcaaa atattgaccc cggaatgaaa acggacaaga      1560
     aaacggataa acgactagga caacgagcat caaataccac agatcaaact cgcactctgc      1620
     taccaccttt aactgcagaa gactacgaca aaatccacaa tcttactagc atcccaacaa      1680
     ccagcaagca gcacaaacca caaactgatt cgccaagcgc gaggcctccc acgtcgaccc      1740
     tgaccaggga tgtcccggag caatccgatg agcccctggc ggcagttgac gtgggctgcc      1800
     cactatatcg ggcaagtacc tttttgcaca tttcaccaca aaaacagcca aactccacac      1860
     ttatttttac gaatccagga tcctgggaat caaactgtac cgaagatgtc accaccaaca      1920
     cgacttatgc aaccgacatc ataccagcat caaccgcaat aaacaaccac gattcaccgt      1980
     tgaccgtatc gacagacctg catcgctttg attcgccacg cgcgaggcct cccacgccga      2040
     ccctgaccag ggacgtcccg gtgtattccg atgaacccct ggcggcagtt ggcgtgggcc      2100
     gcccacaccc atgggcaagt atcacatcca atttacatca cgaacagttc gaagccaata      2160
     tatttccaac ctattcagga aacaacgcca atggaaaaag aagaggatcc cccatcaaag      2220
     taattcaacg aatgaacaac agcagcaaac caccattacc caagacaaac cacgattcgc      2280
     caagagcgag gccccccacg tcgaccctga ccagggatgt tccggaacaa tccgacgagc      2340
     ccctggcggc agtcggcgtg ggccgctcgc accaccgggc aagtatcatt acacattccc      2400
     catccgaaga atcggcaatt tctgttgtat atccccaamt aacagcaagc gacgaagagc      2460
     atgcgaccag cggaatggat ctctcgtgtg tagtagccga acagggtcag caataccaca      2520
     tcacagaact acattcacca tcagmagcat ctaccgactc cgaaggatgt ctccccaaac      2580
     cggggaaaac aactccaaac atagcaatcc agtggaatat caacggcctc cgctcgcact      2640
     taggggaact ccagttaatg attgctaaat accaaccatt cgtgatctgc cttcaggaaa      2700
     ccaatgccga cggtagcaag ttaggatcag acagccttgg tccgaattat caactattac      2760
     taagtcaatg ctcaccacac ggtagacaag gtgctggaat ggccataaag aaagggactc      2820
     cgtttcaaca aatcagcttt cgaaccaagt tacaagccgt tgcaatacaa ctacaagcgc      2880
     caacgtccat gacgattgtt tcagtttacc ttccacccaa ggataaaaat gctgtagggt      2940
     tgttaggtga tttgctgaat gaactcccaa aaccaattct aatactaggg gacctgaacg      3000
     cccaccatcc tgcatgggga agtaggatca ccaatacaat atctgaagcg aagaagagag      3060
     gtgataaaat tctggagttg gtattgcagc acgacatgct aatcctcaat aatggaactc      3120
     atacgcgcat cgacccttcc acaggggcat cacaagccct tgatgttacc atctgctcaa      3180
     catcacatgc atcgaaattc cattggaaaa ctttgatgga attctctgga agcgatcatc      3240
     tcccaaccat gataagtact cctggcaaca caaatgaacc aaagcgtaga ccaaactgga      3300
     ttcttgaaaa agccaactgg gatctttacg agaaaatcac aagcgaaacc ctacatccga      3360
     agtccatttt aacagtggat gaattcacga acagaataat ttcggcagcc aactctagca      3420
     tcccgaaaac taccggaaac gtgggaagaa aatctgtagt atggtggaac gaggaggttg      3480
     aaacggtgat taaagccaga cgcaaatgcc tgcgtgcgct tcgtcgattg aaagaggacg      3540
     acccacggaa acccgctgcg ctgaagcggt tccatgatgc acgatctgtc tgccgcaaaa      3600
     cgataaatga tgccaagcaa aaaagttggg aggacctcgt ggaaagtatt aacccggata      3660
     ctccagcaag ccaagtatgg aacagcgtta acagactgca gggaaaaagg aaaaacacca      3720
     cgattacctt gaatctaccg acaggccaca caaatgacgg agaaaagata gcgaacgctc      3780
     tggccgacga atatcaacgg aagtcatcga acgaaaatta ctctgctgaa ttcaggaaaa      3840
     aacacaaaga taataactgc actgccttca agaatcaacg tccaagcctt cacaaaaact      3900
     acaatgtgga cttcaccatc gaagagctta tgtgggcact caaccgacgt gctggtagtt      3960
     ctaccggcga tgacaacata agctatgtgc taatacaacg tctccctttc tcttcaaaaa      4020
     ttgcccttct aatgttgttc aacagagtgt gggacagtgg tagctttcca gcgcaatgga      4080
     aagttggcaa cataatccct ataccaaaac ctgaagcaga cagaagtaaa cctgaaggat      4140
     acagacctat aacgctcctc agttgtgtag gtaaactttt cgaaagaatg gttaatcgaa      4200
     ggctcatcac cgaactggaa accaccggta gattggatcc acgccagcat gcattccgtg      4260
     ctggaaaagg tgtcgactcc cacttcgccg agttagaatc tttcatcagt ctagaaaacg      4320
     atgaacacgt ggaaatcgta tctcttgata tttcaaaagc ctacgatacm acgtacagac      4380
     ccgcaattct gcgtacctta acagaatggc ggatctgtgg acgtttgatg aatatcgttt      4440
     ctagttttct ctgcgacaga tattttcaag tagttgccaa tggctcccta tctacactac      4500
     gaaaagctga aaatggtgtg cctcaagggt caaccctttc tgtaacgctt tttttagttg      4560
     caatgcaacc tatctttgaa gtcattccat ctgaagcaca aatactacta tatgcagatg      4620
     atgtgatatt aatagtgaaa ggaagaaacc acggtacgat tcgcaagaca ctgagaaaag      4680
     cagttgcagc ggcagttgga tgggctgcga gtgtggggtt ctctatagct ccaacgaagt      4740
     ctaaactgct acatgcttgc ctcattcccc acagaaaacg tggtcgtgcc atcaaaatca      4800
     atcaaactcc tattcctctt gtacgaagcc tcaaaatttt gggaatcata ttagactcga      4860
     aattcaactt attgaaacac ttcagaacag ttaaagaaaa cagcggtaag aaaatccatt      4920
     tattgcgtat tttgggttat cgaatcaaac gaagcagtag agtaacactg ctaaacatag      4980
     gattcgcttt aattgtctcg aagatattct ttggccttgg gctaacgagc ctcaacatcg      5040
     aagcaatgca acggattctt ggtcccatat acaatgaagt ggttcgtcga gcaactggag      5100
     cttttcccac aagccctgtt atctcaataa tgtctgaagc tggatgcctt ccctttaatc      5160
     tagcactgat ccaaaggctt ggccaactgg ctatccgatt gctggaaaaa tacgaaactg      5220
     acgtcgaata tcctttagtt aaaagagcta gagacattat attggatacc actggatggt      5280
     ctctcccagt cgtctgcaaa ttgttgaggc taacagacag agcatggtat gcatcacccc      5340
     ctaaaatcga caatcacctt aagaacagca tcagagctgg cgcaagcaaa gaaacggtac      5400
     tgcccatgtt caaaagtttc atcagtaatc gataccctac tcacgaacaa gtttttacag      5460
     acggttcgaa agacaacaat aatgtaggcg ccggaatagc tacgtctgat agacatatta      5520
     gcttccgttt accggacgat tgtagtgttt tttcagctga agcttttgct ctgaaagccg      5580
     cagtatctaa catacaagct ggcaaaaaaa ctataattct aaccgattct gctagctgta      5640
     ttgatgctct gaagaaaggt tggtccaaac atccatggat acagtcgatc gaaaaaatga      5700
     cagaaaacca ggacatcaca tttagttgga tcccaggtca ctccgggata agaggtaacg      5760
     acaaagctga cgaagcggct aaacaaggaa gaaatgaaac gaaactggat attccgttac      5820
     cggctcaaga tgttctgcga tcgatgagaa acaagatctg ggaagtatgg caaacggaat      5880
     ggcatcggac ccaagttcat ctacggcaaa tcaaggcaag tccttgcaaa tatccagacc      5940
     ggaagtgccc ctccgaacaa cgtgtattat ctagaatgcg tataggacac actcgaatca      6000
     ctcacgttta tttgatgact aattcgccgc caccaatgtg caacttttgt ggagtacagc      6060
     tgacagtgca acactttctg gtagaatgtc gaggattcga acaaaacagg gaacgttgcg      6120
     gcataaatgg ttcaactgct gaaatattag cgtacaacac agcaagagaa acattattaa      6180
     ttaagttcct aaaagattgt aatttattca acgaaatttg acaaattgct gtttgaaatc      6240
     atgtaactct attttaatta ctatctgaca cgaatgccat atgtttggta aagtgtcatt      6300
     aataaataat aataataata ataa                                             6324
//
ID   I-53_AAe    repbase;    DNA;    INV; 6679 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-53_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6679
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1324-1324 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           788..2125
FT                 /product="I-53_AAe_1p"
FT                 /translation="MTSPTGGDPGGSLGPRLPLFMDPQNEFGRLTILQMTG
FT                 IDGVNLPVDPYLIGKSIELVVGDSAIESASSEQTKRYTIRVRNPVHVEKLI
FT                 KMTKLIDGTPISITPHPTLNISKCVISSYDTICYTEEELLENLGPQNVMKV
FT                 QRITRMENGNRVNTPAIILTFNQTTYPGHVKVGLLRIATRPFYPNPLLCYN
FT                 CFNYGHSKVRCSAAKRCHNCSAEFHDENCQESPVCCNCKGDHRSTSRTCPI
FT                 YQKEXAVVKLKVDDNLTYHEARRRVAEGNLTYAQAAAQTRLDTSKIEALME
FT                 ENKKKDEIINKLIADNKKKDDTILKLLEDVNQKNQQLESLVHKVDSLQSSL
FT                 AALSSTIQSAPETSPQSEKCPQRQVKVITITDKAKGITKRRLQVEDNLLRR
FT                 SKRLQNASPESRSPLAKAAKPATSDTDLDPIIEYDEEVVDNSDDETLSVHP
FT                 N"
FT   CDS           2070..6542
FT                 /product="I-53_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MMKKWWITLMTRPYLYTPINHLTMSVISNKSCKFTRP
FT                 INDPTTDNRNNPNTSIINNSGRFGSGESEVPLSLPQAGAQLSGGSVRDVIP
FT                 QPVDGESLCAAYEVDGKVNERNPYSTSTTPSTNHKASTSPDINNLNASMGL
FT                 DNPRPFPTPTLTGDVPQPCDEPPAAVGVGGLLSQASTSVNLAKSPHTYPLN
FT                 ISAAPCLQGYNRKAAPPATKMPPPPSVLSDAEAYDRLYHRQQATSSSRQRT
FT                 TIPTAILQDDNGTQPSTPPNLASTQRSASPCSSENRSLTNHCKKYRIALQW
FT                 NMNGLFNNMSDLQLLTRDNPPQTLALQEVHCRDSKGLDRILSGQYQWYVKS
FT                 GSTRFQNVGIAVLRALPHTQVQLNTSLTALAVKIDLPFQHTIVSLYLPQNG
FT                 IGNLENALQNLIGQLEKPYIILGDLNSHHYAWGSTKTDKRGTAILNVAEEN
FT                 DLIVLNDGSPTFLRGSCTSCIDVSLVSSEIISLLKWNIHADPMGSDHYPIE
FT                 IQSNDSPPETTRRPRWRLEEANWDGFEQDIISSINPEYIYSPESLCELIYD
FT                 AAKANIPRTSSKPGPKALHWWNDDTQAAVKARRKALRKFKRTPKTHPDWKA
FT                 VHENYQRLRNQCRDVIRRAKCESWEAFLDGFDSSQSTTEMWRRVNALSGKR
FT                 RAQGIGILQNGVVSRDPIFVSNALGEYFSKLSSHEAYSRSFITAQTKAHCT
FT                 STSISVQDDVDDCDFNKPFTISELLYALDSARGKSAGPDDVSYPLFRHLPL
FT                 PVKCSLLESINQMWSNGTFPKKWQHSLVVPIPKKKIGSTDPRDYRPIALTN
FT                 CASKIMERMVNRRLTTVLQERNLLDQRQHAFLKGRGTGSYLAALGQTIDDA
FT                 LTNDLHVDIAALDLSKAYNRVWRPGVLRQLINWGFIGNMGKFIQGFLQDRT
FT                 FQVMIGNTRSRTFQEETGVPQGSVLAVTLFLVSMNSVFDNLPKGIFIYIYA
FT                 DDIIIVVVGKKPKLIRRKLQAAVRAVAKWAENIGFSMAAEKCSISHCCTLR
FT                 HHPWNNPVTVAGMPIPFKKELRILGVTVDRKCNFRSHFNLVKKETECRIRL
FT                 IKAISGRHKTNNRKSLQTVGRSIVVSKLLYGLEIIIRAYREMIVAFSPVYN
FT                 KVIRITSGLLPSSPSLATCVEAGVLPFPFVLTIAAASRTVSYLEKTYGDCT
FT                 NIFILEKAKNLVREYAAMDFPPVAQVYRVGDRRWNKSGPKIDWTIKHAVRA
FT                 GDSSTKISAELNSLLSNKYSMHVKIFTDGSRAKETVGVGVYSSTFQIARRV
FT                 PNEFTVFSAEAAAIYLAIRNIEDPNAQTIILSDSASVLSSLENPRQKHPLI
FT                 QLIEARIPANTTLCWIPGHCGIKGNEEADRLACQGRRSVMWNLQTPGHDIR
FT                 SAITRGAHRTWYLQWLSNRDIFLRKIKTDIGQWKDRKDRKEQKIISRLRVG
FT                 HTRITHSHYISANPKPTCTICSTPLTVEHILVNCPQYEATRVNLNLHTSIR
FT                 NILQNDPVEEIKLINFLKDSNLYSSI"
XX
SQ   Sequence 6679 BP; 2090 A; 1625 C; 1382 G; 1581 T; 1 other;
     cagtgtatat caatagtcta ggcagagaag acgtcgcgtt tttctactct ggctattttt        60
     catagtaaag cgtcccaagt cgcgcaaaaa tcgtcatttc ttcgccgtgg atgtaattta       120
     ttgtattgca aatatagtga ttgttggttt tatcaccaaa gtggtacagt ttggaccttt       180
     ctggccgcta gaatcggttc cacttggact gcatcaagtg tacgatcggc gaccacaata       240
     accgcgtggt gaagctacca gtagtagtgc tatttagaac catccaagca gacaatccca       300
     aaaagaacat tgtacactgg tactagtgaa gatcgataga tcaacagtgt gtgttgttcc       360
     cgttctctca gtgagtgacc agcttgcaca gtagcacgtg cttatgaaga ttagtgatgc       420
     aaacatgtta aagcacgaaa cgatggactg tcgaatcaag cattggaatt cgcaaaactt       480
     gcgccatggc gcttccttta gtgcgtccca agaggcgcaa cattatttct tggtactgtg       540
     caccataggt gcaagaaacc aagcagacag tcccaaaaga acattgtcac tgtaccatga       600
     atagtgtttg ttcctcctgg agcgctgccc tagtaacgaa aagagagatc aaaacaaata       660
     agatccaact cgtgatcatc tatccattcg ccttggggta ggtagcaggt gactgctatc       720
     atcgccgttt gtcggcctat tgcgaatgga agatcatgcc aatagtgagt aggtaaaaac       780
     acccactatg acctccccca ctgggggcga tccgggaggg tcgttgggcc caagattgcc       840
     tcttttcatg gacccacaga atgaatttgg caggttgaca atactgcaaa tgaccggaat       900
     tgatggtgtg aatttgcctg tggacccgta tcttatcggg aaaagtatcg aattggtggt       960
     tggggattct gctatcgaat ctgcatcaag tgagcaaaca aaacggtaca ctattcgggt      1020
     tcgcaaccct gtgcatgttg aaaagcttat caaaatgacc aagctcatag atggtacgcc      1080
     aatttctatc actccgcatc cgaccctcaa catcagtaaa tgtgtaattt cctcgtatga      1140
     cactatctgc tacacagagg aagagctgct ggaaaatcta gggccacaaa acgtgatgaa      1200
     ggtacaaagg attaccagaa tggaaaatgg caatcgtgtt aacaccccag caataatatt      1260
     aacattcaac caaacaacct atccgggaca cgtaaaagtt gggctgctac gaatcgctac      1320
     ccgccccttt taccccaacc cgcttttatg ctacaattgc ttcaattatg gtcattcgaa      1380
     agtacgttgc tctgctgcta aacgctgtca caactgttcc gctgaattcc acgatgagaa      1440
     ttgtcaagaa tctcccgtct gctgcaactg caaaggagac caccgctcca caagtcgaac      1500
     gtgtccaatc taccagaaag aagkcgccgt agtcaagctc aaggtggacg acaacttaac      1560
     gtaccatgaa gcaagaagaa gagttgcaga gggtaatttg acctatgcac aagccgctgc      1620
     ccaaacccga ttggatacct ccaaaataga agctttgatg gaagaaaaca agaaaaaaga      1680
     tgaaatcatc aacaagctta tcgcggataa caaaaagaag gacgatacca ttctcaagct      1740
     cctcgaggac gttaatcaga agaaccaaca attggaaagc ttggtgcaca aagttgactc      1800
     tctgcaatcc agcctagctg ctctgtccag caccattcag tcagcgcctg aaacatcacc      1860
     tcaatcagag aagtgccctc aacgtcaagt aaaagtcatt accataactg acaaagcgaa      1920
     aggaatcacg aagcgcagac tgcaggtaga agataacctt ttgcgtcgat caaagcgtct      1980
     tcagaacgcc tcaccagaaa gcagaagtcc acttgcaaaa gctgcaaagc cagctacatc      2040
     ggacaccgac ttggacccaa taatcgaata tgatgaagaa gtggtggata actctgatga      2100
     cgagacccta tctgtacacc ccaattaacc atctaacaat gtcagtaatt tccaacaaat      2160
     catgtaaatt tacacgaccc atcaatgacc ccacaaccga taacagaaac aaccccaata      2220
     catcgatcat caacaactcc ggtaggtttg ggagcgggga aagtgaagta cccctctcac      2280
     tcccacaagc gggagcgcag ctgagtggag gatctgtccg ggacgttata ccccaacccg      2340
     tagacggaga atccctctgt gcggcctatg aagtcgatgg aaaagtaaat gaaagaaacc      2400
     catacagcac ctctacgact ccatcaacga accacaaggc atctacaagc ccagatatca      2460
     acaacctcaa cgcttccatg ggtttggata accctaggcc tttccctaca ccaaccctga      2520
     ccggggatgt accacaaccc tgtgatgagc ccccggcggc agttggtgtg gggggcctgt      2580
     tatctcaggc aagtacctcc gtaaatttag caaaatcgcc acacacatac ccgctcaaca      2640
     tttcagctgc accttgcctg caaggataca atcggaaagc agccccgccc gctactaaaa      2700
     tgccacctcc accatcggtt ttatccgacg ccgaagccta cgatcgattg taccatcgcc      2760
     aacaagcaac ctcaagtagt agacaaagaa caacgatacc aacagccatt ctacaagatg      2820
     acaatggaac tcaaccatct accccgccaa acttagccag tactcaacgt agcgcatctc      2880
     catgctcttc ggagaatcgc tcccttacga atcattgtaa aaaataccgg attgctttac      2940
     aatggaacat gaacggtctg ttcaacaata tgagcgacct tcaactgcta acgcgcgata      3000
     atcctcctca gactcttgca ctccaagaag tccactgtcg tgattcaaag ggtctcgacc      3060
     ggattctttc tggtcaatac caatggtatg tcaaatcggg ttcaacacga tttcaaaacg      3120
     tcggaatcgc agttcttaga gcccttcccc atactcaagt acaattgaac acatccctga      3180
     cagcccttgc tgttaagatc gaccttccat tccagcacac cattgtatcc ttatacctcc      3240
     ctcagaatgg aatcggtaac ttagaaaatg ccctacaaaa tctgattgga caattagaaa      3300
     agccgtacat aatactggga gacctaaaca gtcatcacta cgcgtggggt tcgacaaaaa      3360
     ccgacaaaag aggtaccgcc atccttaatg tcgcggagga gaatgatctc attgtactca      3420
     atgatggaag tccgaccttc ttgcgtggct catgcacatc ttgcatagat gtgtcattag      3480
     tatccagcga aataatcagt cttcttaaat ggaatatcca cgctgatcca atgggcagcg      3540
     accactatcc gattgaaatc caaagtaatg attctccacc ggaaacgact agaagaccca      3600
     gatggcgtct tgaagaggcc aattgggacg gtttcgaaca agacattata tcttcaatca      3660
     atccggagta catatattct cctgaaagcc tgtgtgaact catttacgac gctgctaaag      3720
     ccaatatacc aagaacgagc agtaagccag gcccaaaagc cttacattgg tggaacgatg      3780
     acacacaagc ggcggtgaaa gctcgtagga aggcgctcag aaaatttaaa cgtaccccaa      3840
     aaactcaccc ggactggaaa gcagtccacg aaaattatca acggctaaga aatcagtgca      3900
     gagacgtcat tcgtagagct aaatgcgagt cttgggaagc atttctcgac ggtttcgaca      3960
     gcagccaatc taccaccgaa atgtggcgac gagttaacgc attaagcgga aaaagaagag      4020
     cacaaggtat tggtatcctt caaaacggag tcgtctcacg agatccaata ttcgtttcca      4080
     atgctttggg agaatacttc tcaaaacttt cttcacatga agcatacagt cgtagtttta      4140
     taactgcaca aacaaaagca cactgtacat ccaccagtat atcagtacaa gatgatgtag      4200
     acgattgtga cttcaacaaa cccttcacaa tctcagaact actttacgca ctggattctg      4260
     ctagaggaaa atctgcaggc ccagacgacg tcagctatcc tctcttcaga catcttccac      4320
     taccagttaa gtgttctctc ctggaaagta ttaaccagat gtggtccaac ggtactttcc      4380
     caaaaaaatg gcagcacagt ttagtcgtcc cgatacccaa gaaaaaaatt ggatcgactg      4440
     accctcgtga ttatcgcccc atagcactta caaactgtgc ctcgaaaatt atggagcgca      4500
     tggtgaacag gcgcctcact actgttctcc aagaacgtaa ccttttagat caacggcaac      4560
     atgctttctt aaagggtaga ggaaccggat cttatctcgc agcactgggc caaacaatcg      4620
     atgatgctct gacaaacgat ttacacgttg acatagcggc cttagatcta tcgaaggcct      4680
     ataacagagt ctggcgaccc ggagttctac ggcagcttat caactggggt tttattggta      4740
     atatggggaa atttatccaa ggttttttgc aagatagaac attccaagtg atgataggga      4800
     acacacgttc caggaccttc caagaagaga ccggagtacc gcaaggctct gtgttagcgg      4860
     taaccttgtt tctggtatca atgaactccg tattcgacaa tctaccaaag ggcattttca      4920
     tatacatcta tgctgatgat attattattg ttgtggttgg caagaaacca aagttaattc      4980
     gacgaaagct acaggcggct gtaagagctg ttgctaaatg ggcggaaaat attggtttca      5040
     gcatggcagc tgaaaaatgt tcgatctcac actgttgtac gttaagacat cacccatgga      5100
     ataacccggt tacggtcgca ggaatgccaa tccctttcaa aaaagaactt cgaatcctcg      5160
     gagtgacagt tgaccgcaaa tgtaacttcc gaagtcactt caatctcgtc aagaaggaaa      5220
     ctgaatgcag aattcgatta attaaagcga ttagtggaag acataaaacc aataaccgta      5280
     aatcattgca gactgtcggc cgcagtattg tggtcagtaa actactttac ggattagaaa      5340
     tcataatacg tgcctacaga gaaatgatag tagcttttag tcctgtctac aacaaggtaa      5400
     tacgaatcac ctcaggatta cttcccagtt ctcctagcct tgcaacatgt gtagaagccg      5460
     gagtactccc gtttcctttc gtactaacga tcgcagcagc atccagaacc gtaagttatt      5520
     tggagaaaac atatggtgac tgtaccaaca ttttcatcct agaaaaagcc aaaaaccttg      5580
     tcagggagta tgcagccatg gatttccctc cggtagcaca agtctatcgg gtcggagatc      5640
     gccgatggaa caaatcagga cccaagatcg attggacaat taagcacgca gttcgcgcag      5700
     gggattcttc aaccaaaata tctgctgaac tcaatagcct gctcagcaac aagtatagca      5760
     tgcatgtgaa aatattcacg gacggctctc gagcaaagga aaccgtagga gttggtgtct      5820
     atagttcaac gtttcaaatc gcacggcgag ttcccaacga attcaccgta ttttctgcag      5880
     aggctgctgc tatatacctc gctatcagaa acattgaaga ccccaatgca cagacgataa      5940
     ttttatcgga ctcagccagc gtcttgtcgt ctttggagaa ccctagacag aagcatccac      6000
     tgatacagtt aatcgaagca cggattcccg caaatactac gctctgttgg ataccagggc      6060
     attgtggcat aaaaggcaac gaagaagcag atcggctagc atgccaaggg agacgttcag      6120
     taatgtggaa ccttcaaaca cctgggcatg atatacgtag cgcgattaca cgtggtgctc      6180
     atcgtacgtg gtatctacag tggctttcaa accgtgacat tttcctcagg aagatcaaaa      6240
     ccgacattgg acagtggaaa gaccgcaagg atcgcaaaga acaaaaaata atatctcgcc      6300
     tgagagtggg gcacaccaga ataacccatt cgcattacat ttctgcaaat ccaaaaccaa      6360
     cctgtaccat ctgttcaaca cctttaaccg tggaacatat cttagtcaac tgcccccaat      6420
     atgaagcaac aagagtcaat ttgaaccttc atacaagtat acgcaatatc ctccagaacg      6480
     acccagttga agaaattaaa ctcataaact ttctgaaaga tagtaactta tattctagca      6540
     tttaattaca atatctttat aataacctta aattgttata tactccttgt atttagtctg      6600
     tttttttttt ctatttcaaa cgaggtgaac cagccttagg cactgaaaac ctctataata      6660
     aagcaataaa aaaaaaaaa                                                   6679
//
ID   I-54_AAe    repbase;    DNA;    INV; 4454 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-54_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4454
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1325-1325 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..1821
FT                 /product="I-54_AAe_1p"
FT                 /translation="MGGHPGXFRGPGPSNMLGGQFTGRSFPEWGDSQESHG
FT                 NLVLLRMEAANGSLPNAPFLLRKSVEAYLGVPIDGAFPEAKGASYVLKLRS
FT                 DRLVQRLKNMDQLADGTVIKISEHPVLNKTKCVISCKDTVGYSDEELKAEL
FT                 QDQGVVDIRRITRSEGKERVNTPTVILTINGTVAPEYIEVGWLKCRTRPFY
FT                 PAPMLCFGCYNFGHTKLRCQQQLPVCGNCSENHQSDRETPCKAAAFCSRCE
FT                 SSDHSLSSRKCPTYKVEEEIQHLRVDLGISYPAAKQAFEQRKGKTTYSSVV
FT                 KSDQDKKFEDLAMKVEKLQHDMLNKDGKIEALIQQVEARDLEIKKRDARIG
FT                 QLETALRAGPQERLSIAQEYGTIEDLLQKLKTLEQKLEQKNKEVITLRKIY
FT                 TPESLNILPLVTQASSKTSTTHPTAEKKSYNKTTEHTKQEKMTSFELERKK
FT                 LGTLSSTRNKSKTRDSPKSKRQKKRCVG"
FT   CDS           2075..4453
FT                 /product="I-54_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase,
FT                 C-terminal truncated."
FT                 /translation="MNERSRLTEHEHQNEENAPTTLIARSPESALPNPPRS
FT                 QNTHQNPYLIPTEARTNALLYDTFQLVTRNIRSPGPSNSWHHVDTVTRNHF
FT                 EAERRKETSSAVKHSHSTTPYLKYPVEPLGSRGPVSAEVMGSPELADNLLR
FT                 PLASGRGTDKGTCSYSPSPLAGGSMQGKPSSPPQDDVGCFRYQSYSNESLE
FT                 TTSISTDHHSNSDDHTNKKAFALQWNINGFHNNLADLEMLVRELCPTVIAI
FT                 QEVHRASKTGMGRTLSGGYNWELKINQNIYHSVAIGILAHISFTAIDLDTT
FT                 LPIIAIRIDSPLPISIVNFYLPCSKIDNLDQQLGKIMEKIPEPRLLLGDCN
FT                 GHHPAWGSSSTNLRGRIMTDMAEVTDSVILNDGSKTYISGGRESTVDITMV
FT                 CSSVANRFLWKVHDDPLGSDHRPIIILLNDQPPKTSRRPRWVYDQADWASY
FT                 QSAIEATLDTTEPTTISNFVKSIHQIASDTIPKTSSRPGRKALPWWSPETK
FT                 KAIKARRKALRKFKRLPDSHPQKEEVHLIYRQARNNCRQVVRDSKKQSWSK
FT                 FLDSINDQQTPAELWRRVNALNGKRRLKGFEIHHQGSSTSEPDIVANVLAK
FT                 YFAELSSINRYDPKFCRVKKVSLTSLNHVQIPADNNXEINVPFSLAELNFA
FT                 MKTAKSKSVGPDEIGYPMLKQLTERGKRCLLQLLNKEWNNNTLPREWKHSL
FT                 VVPIPKNQAPSNEPNNYRPISLTCCISKVLERMVNRRLIRYLNEGDFLDHR
FT                 QHAFRPGHGTGTYFATLGQVLDDALKRDDHVEVATLDLAKAY"
XX
SQ   Sequence 4454 BP; 1419 A; 1044 C; 970 G; 1013 T; 8 other;
     agttcgacag ttggtcttgt gacgaacagt cgtgtttttc tctgcgctga tagactgtgc        60
     gacwctkctc caatcgaaat ctgttttcta cgtgtccgag agatataaaa ggattgtgca       120
     ctcagtgggt gtcccgtcga gcgaacaatt tctgcgacat ctgtttcgtg gcataaagaa       180
     aagtgctaat catctgaaat caaagccaca aaaaagcacg cgggtgcatw tcgcacataa       240
     tagtatagac aggtaccaaa gtgaacaaag gcaatagaca atagtgttgt gctaattgtt       300
     ctgtgtgacg atacgagccc gataacgccg tatcggacgg tggagatttt cgtagaattg       360
     taaagtaaag tctgaacacg agtggaagta ttctcgacaa aaatgggagg ccaccctggm       420
     mmmtttcggg gcccgggacc gtcaaacatg ctaggagggc aattcacagg ccgcagtttt       480
     cctgaatggg gcgactccca ggaaagccat ggcaatctag tcttgctgcg aatggaggct       540
     gccaatggat ctttaccgaa tgcaccattt ctgttgagaa aatcggtgga ggcatatctt       600
     ggcgttccaa tagacggagc ctttcccgag gccaaaggag cttcctatgt gctgaagctt       660
     cgaagtgatc gtctagttca acggttgaag aatatggacc agctggcgga cggtaccgtg       720
     attaaaatta gcgaacaccc tgtcctcaac aaaactaagt gtgtaattag ctgcaaggac       780
     acagttggtt actcagatga agaactgaaa gctgagctcc aggaccaagg agttgtcgac       840
     atccgacgta tcacccgctc ggaaggaaaa gaaagagtca acacaccaac agtcatctta       900
     accatcaacg gaacagtggc tccggaatat atcgaggtag gttggctgaa atgccgaacg       960
     cggccttttt accctgcccc gatgttatgt tttgggtgct acaatttcgg acacaccaaa      1020
     ttacgctgtc agcagcagtt accagtatgt ggtaattgct cggaaaacca tcaaagcgac      1080
     cgtgagactc cttgcaaggc agcagctttt tgcagtcgtt gcgaatcttc tgatcactct      1140
     ctaagctcac gaaaatgccc tacgtacaaa gttgaggagg aaatccaaca cctacgtgtg      1200
     gacttaggta tctcataccc ggcggccaaa caggccttcg agcagcgaaa gggaaaaact      1260
     acgtactcct ctgttgtcaa aagtgaccag gataagaaat ttgaagatct agccatgaaa      1320
     gtagaaaaac tccaacatga catgctaaat aaggatggca aaatcgaggc acttatccaa      1380
     caagttgagg ccagagacct ggagattaag aagcgcgacg caagaatcgg acagctagag      1440
     acggctttgc gagctgggcc ccaggaacgg ctttccattg cacaagaata tggaactatc      1500
     gaagacctcc tccagaaatt gaagacgctg gaacagaaac tggagcaaaa gaataaggaa      1560
     gttatcacac tgcgaaaaat ttacacacca gaatcgctca atattctccc gttggtcact      1620
     caagccagtt cgaagaccag caccactcac ccgaccgcag aaaagaaaag ctacaacaag      1680
     accaccgaac ataccaagca agaaaagatg accagctttg aattggaaag aaaaaaatta      1740
     ggtacactct cgagcaccag aaataaatca aagacaagag acagtccgaa gtcgaaacga      1800
     caaaaaaaac gatgcgtcgg atgatgacaa taacgataat tcgacgataa cgataccaga      1860
     gatcatcgaa gtcgattacg acttctcgtc gaacgacgaa acgatgatgg aagaatcttc      1920
     aaactaccca taaataatcg aaatcctctc cagtcatcta tcatatctgt aatacacaga      1980
     aaccttctaa ttaattttca agcccattca agcaaaacta gaagacatta cgcagactgg      2040
     gaggaacacc accgacaacg actttttttc atatatgaac gaacgatctc ggttgacgga      2100
     acatgaacac caaaacgagg aaaacgctcc aaccacatta atagccagat ctcccgaatc      2160
     agctttaccg aatccaccaa gaagccaaaa tacccaccag aatccatatc tgataccaac      2220
     tgaagcaagg acaaatgcat tgctgtatga tacttttcag cttgttacta gaaatatccg      2280
     ttcaccaggt cctagcaatt cctggcatca tgtcgataca gtcactagga atcacttcga      2340
     agcagaaaga agaaaggaaa cttcctccgc tgtaaagcat agtcattcga ccacacctta      2400
     tctcaaatac ccggtggagc cattgggtag taggggcccc gtcagtgcgg aagtcatggg      2460
     ttcaccggaa ctggcggaca acctcctacg ccctttggcg tccggaagag ggacggacaa      2520
     gggaacatgt tcctattccc cttcgccact tgctggaggg tcgatgcaag gaaaaccgag      2580
     ctctccccct caggacgacg tgggatgctt ccgatatcaa tcatattcga acgaatcact      2640
     cgaaactact tctatcagta cagatcacca ttctaactcc gacgaccaca ccaataaaaa      2700
     ggcatttgca ctccaatgga acataaatgg attccataat aatcttgcgg atttggagat      2760
     gctggttagg gaattatgtc ctacagtgat tgctatccag gaagttcatc gtgccagtaa      2820
     aacaggaatg ggcagaacac tatcgggtgg ttacaattgg gagctaaaaa taaaccagaa      2880
     catctatcac tcagtagcca ttggtatact agctcatatt tcgttcaccg caatcgacct      2940
     tgataccact cttccaatta tcgccattcg tatagattcg ccgcttccca tatctatagt      3000
     gaatttctat ctcccatgta gtaaaatcga caatctcgac caacaacttg gtaaaattat      3060
     ggagaaaatt cccgaaccaa gactactcct cggagattgt aacggtcatc atccagcgtg      3120
     gggtagttca tctacaaacc ttcgtggtag aattatgacg gatatggcag aagtgacaga      3180
     ctctgtcata ctgaacgatg gaagcaaaac atatattagt ggcggaagag agtctactgt      3240
     cgatataact atggtatgtt catctgtcgc caaccgtttt ctttggaaag ttcacgatga      3300
     ccctctcgga agtgaccacc gaccgataat catcctcctt aatgatcaac cgccaaaaac      3360
     gtcccgtcgg ccccgctggg tttatgatca ggcagactgg gcttcatacc aatctgcaat      3420
     cgaagcaaca ttggacacta ccgagccaac taccatatcg aacttcgtga agtctattca      3480
     tcaaatagca tcggatacaa tcccaaagac cagttcaagg cctggtcgaa aggctctccc      3540
     ttggtggtca cctgaaacaa aaaaagctat aaaagctaga cgaaaagccc ttcgtaagtt      3600
     caagcgacta ccagatagtc atccacaaaa ggaagaagta catttgatat atagacaagc      3660
     gagaaataac tgccgacagg ttgttagaga ctctaaaaag caaagctggt ctaaatttct      3720
     agatagcata aatgaccaac agacccctgc tgagctgtgg cgcagagtaa atgcccttaa      3780
     tggtaagagg agacttaagg gctttgagat acaccatcaa ggctcttcaa caagcgaacc      3840
     agacattgtg gcaaacgtgc ttgctaaata ttttgcagaa ttgtcttcta taaaccgata      3900
     cgatccgaaa ttctgccgag tgaaaaaggt atcactgact tcgcttaatc atgttcagat      3960
     acctgcagat aacaaccmcg aaatcaatgt tccgttttca ttggcagaat tgaattttgc      4020
     aatgaaaacg gcaaaaagca agtctgtcgg tcccgatgag attgggtatc ccatgctaaa      4080
     gcaactcaca gaaagaggta agcgctgcct gttacaactt ttgaataaag agtggaacaa      4140
     taatactctc ccacgcgagt ggaaacatag cctagttgtt cctataccga agaaccaggc      4200
     tccctccaac gaaccaaaca attatcgtcc catatccttg acttgctgca tttcaaaggt      4260
     attagaaaga atggtcaacc gacgcttaat tcgctacttg aatgaagggg actttttaga      4320
     ccatcgacag cacgctttta gaccaggtca cggaacagga acttatttcg ccactcttgg      4380
     tcaagtgctg gacgatgcgt taaaaaggga tgatcacgtt gaagtagcca cactggacct      4440
     tgccaaggct tata                                                        4454
//
ID   I-55_AAe    repbase;    DNA;    INV; 6046 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-55_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6046
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1326-1326 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           423..854
FT                 /product="I-55_AAe_1p"
FT                 /translation="MGASTPEAYWGLVXLGKPVRLTDVPIELINKDSEPFG
FT                 HPRRLLTGGKSHFTKTFPPKSEPTNRKKINAVPGHGTEIAAFSEIPIATTS
FT                 KKSARTLQYTTRKIGSGACIKMQANQNPKIEAAIRLPPVSWSHRQGAKDWP
FT                 TTLIM"
FT   CDS           860..4873
FT                 /product="I-55_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MTTITNGNPENLPAEALSNANIYDHLMASRLGYSWNN
FT                 KPGRSTDTEFANCAPGHSEKLFSGGKSHASLSRFGTPLLLPNENPSTEPFV
FT                 LTQPPMVEHSCPQSSLTRSPSFGSIDNLNVSAISSTSPNLLRKGFTLALQW
FT                 NINGYVNNLTNLEKIISQREPLVIALQEPHKVSPTTMNKTLGQKYVWTTHV
FT                 GQNFYHSVAIGVSCEVPYDTIDIDAEFPIVAARIAWPFPVTIVSFYLPNNK
FT                 LPNLKNLLNKALDDITGPILVLGDGNGHHTAWGSRSNNVRGLTIAEVAGER
FT                 SLCILNDGSMTFVRKRIESAIDVSLASRSIINRLHWVIDDDLSGSDHLPIW
FT                 INLADSPPEISRRPRWLYEQADWISFQENIENSLDSSKPTTMEELTKLIFD
FT                 VALATIPRTSATPGRRALHWWTDKTKAAVKARRKALRAARRIPVGHPNREP
FT                 AMNKYRLEHLKCQKTIREAKEKSWVNFLDEINDQQSSAELWKRVNAIQGKR
FT                 RAKGMGLMIDGSITRDPVAVADALADYFGDLSSFNRYPADFTKKHGSANMI
FT                 LDNIYIPQNPGKRFNQPFTLTELNFALGKANGKSAGPDEIGYPMIKKLPPM
FT                 GKRMFLDRINEEWTAGSLPTNWKKSLVVPIPKASGINTDKSSYRPIALTSC
FT                 LAKVMERMVNRRLTEYIEEKGLLDNRQHAFRPGFGTGTYFAALNDILDRAM
FT                 EKREHVEIASLDLAKAYNRAWTPGILRRLLDWGVSGNLAQFVRNFLSNRSF
FT                 QVIIGNHRSRETSEETGVPQGSVIAVTLFLIGMNGVFEVLPKGVYILVYAD
FT                 DILIIVTGQYPKIIRRKLQTAVNAVAKWASNVGFDISANKCARLHICLDKH
FT                 QPPKQPVMVHGSPIPLKNSWKILGVTFDRKLNFRPHLNNVKNACKTRLNLL
FT                 KAISGKRTKSDRKSRYRVAEAVICSRLFYGLEATSRNFAELVSVLAPTYNN
FT                 AVRIISKHLPSTPADSACVEAGVLPFRYKAAAVLGSRVASYLEKTSDDGSE
FT                 TPLLTQANKILRSIIGIILPPVLERYRNGARSWYAKAPMVDNYIKMRFRSG
FT                 CNSERVQAHFLDRVRTKYTIFNIRYTDGSKSLGKVGIGWCGVGVWEQRSLP
FT                 EQCSVFTAEAAAIFQAITHQQDIIGPVLIATDSASVILATQSENNRHPWIQ
FT                 AIQNALDTHPNTTLMWIPGHCGIAGNENADRCANSGRDSTPLTNKVPCADI
FT                 KLWLKKKTEEAWSKQWHLERSLFTRKIKCCTEHWEDRKDRREQIVLSRLRT
FT                 GHTRVSHDMGEGRNFRKLCGTCQEHNSVEHFLNNCPTLEHIRQMYGLGSVQ
FT                 STLQHDRASEIVLISFLKDAKLYNNI"
XX
SQ   Sequence 6046 BP; 1806 A; 1574 C; 1379 G; 1270 T; 17 other;
     agkcggtgag scccacwtcg ttaaaacatc gacwccsaaa tcwgcatcgg aaascaggaa        60
     ggwaatwcac gccgtgattg gtcawggakt tcgcaacgcc gctctmagtg cagcatcaga       120
     agckagaacc aacatcgagm acctccgaca ccmckttgcc acgagtagcg agggcgccgg       180
     cagaccagaa gttggcgaag aactggaacg gccgaatcga ccgtcgcact cggccggtga       240
     aaaggatacc cctgatagct cgggcaccag aaaaatcaaa aacaatagcg agtacccccg       300
     aaacctcttt gccacgagta gcggtggcgc tggcagacca gaagtcgacg gaggaacggc       360
     cagatcgact accgcactcg gcaggtgaac ataaggaaaa taagagaaat cacacggaca       420
     gcatgggcgc cagcacaccg gaagcctatt ggggactggt atkgctaggc aaacctgtgc       480
     gtctgacaga cgtacccata gaattaatca acaaagacag cgagcctttt gggcacccta       540
     gacgcttact gaccggcggt aagtcccact tcaccaaaac atttccccca aaatctgaac       600
     cgacgaacag gaagaagata aacgccgtgc ccggccatgg cacagaaatt gcagctttta       660
     gcgaaatacc aatagcaacg actagcaaaa aaagcgcaag gacactgcaa tacacaacaa       720
     ggaaaatcgg atctggcgcg tgcattaaaa tgcaagccaa ccagaacccc aaaatcgagg       780
     ccgccatcag actccccccg gtgtcctgga gccaccgaca gggagcaaag gactggccca       840
     ccactctcat catgtgacaa tgaccactat caccaacgga aacccggaga acctcccagc       900
     ggaggctctt tccaatgcca atatttacga ccatctgatg gcctcgagat tagggtatag       960
     ctggaacaac aagccaggca ggtccacaga taccgagttt gcaaactgtg cccctgggca      1020
     ctccgagaaa ctattctcgg gcggtaagtc ccatgcgagc ctatcgcgct ttggtacacc      1080
     tctcctcctt ccgaacgaaa atcccagcac agaacctttc gttcttactc agcccccaat      1140
     ggttgaacat tcttgcccac agagctccct gaccagaagc ccatcctttg ggtctataga      1200
     caacctaaac gtctcagcga tctcatccac ctctcctaat ctgctaagga agggatttac      1260
     tttagcccta cagtggaaca tcaacggtta cgtgaacaac ctgactaacc tagaaaaaat      1320
     aatcagtcaa cgtgaaccgc tggtcatcgc tctccaagaa ccacataagg tatctcccac      1380
     gaccatgaac aagacactgg gccaaaagta cgtttggaca acccacgttg gacaaaactt      1440
     ctaccattcc gttgctatcg gtgtctcatg cgaggtaccc tatgacacaa tagacataga      1500
     cgcggagttt cccatcgtag ccgccaggat agcgtggcca ttcccagtca caattgtctc      1560
     tttctacctg ccaaacaaca aattgcccaa tttgaaaaat cttctgaaca aggccttaga      1620
     cgacattacg ggaccgatat tggtgctagg agacggtaat ggtcaccata cagcttgggg      1680
     tagcagaagc aacaacgtca ggggtttgac tatagcggaa gtagcaggtg aaagaagtct      1740
     atgtatactt aacgacggat ctatgacttt cgtccgaaaa aggattgaat ctgcgatcga      1800
     cgtatccttg gcctcccgaa gcatcatcaa tcggctgcac tgggtcatcg atgacgacct      1860
     ctcgggaagc gaccatctcc caatatggat caatctagcg gactcaccac ccgaaatatc      1920
     cagacgaccc cgatggctct atgaacaggc cgactggatc tccttccagg aaaatatcga      1980
     aaacagtttg gattcctcca agccaactac tatggaagag ctcaccaaac tcattttcga      2040
     tgtagccctc gccaccatcc cgagaacaag tgctaccccc ggccgtcgag cattacattg      2100
     gtggacggat aaaaccaaag ctgcagtgaa agcgagaaga aaggccctca gggcagccag      2160
     gcgtatcccg gtcgggcatc caaataggga accggctatg aacaagtata gattagagca      2220
     tctcaaatgt caaaaaacga tccgagaggc caaggagaaa tcctgggtca atttcctaga      2280
     cgaaatcaac gaccagcaat cttcggctga attatggaaa cgagtcaacg caatccaggg      2340
     caaaagacgg gccaaaggaa tgggcctgat gatagacgga tcgatcaccc gagacccagt      2400
     cgcagtcgcc gatgcactag cggactattt cggtgatcta tcttccttca accgataccc      2460
     agcagatttc acgaagaaac acggatccgc taatatgatt ttggacaata tctacatccc      2520
     tcagaaccct ggaaaacgct tcaaccaacc tttcacattg accgaactta acttcgccct      2580
     cgggaaagcg aatggtaaat ccgcaggacc ggatgaaatc ggatacccga tgatcaaaaa      2640
     actacctcct atgggaaaaa gaatgttttt ggatcgcatc aacgaagaat ggacggctgg      2700
     ctcgttgcca accaattgga aaaaaagtct ggtggttccg atcccgaaag cttccggaat      2760
     aaatacagac aagagcagtt atcggccgat tgctttaacc agttgtttgg ccaaggttat      2820
     ggaacgaatg gtcaacagaa gactcaccga atacattgag gaaaaaggac tgctagataa      2880
     ccggcaacat gcttttcggc cgggtttcgg aacgggtaca tatttcgccg cgttaaatga      2940
     cattcttgac cgagccatgg aaaaacgaga acacgtcgag attgcctcac ttgatttggc      3000
     caaagcctat aacagagctt ggacgccggg aattttaaga cgtttgttgg attggggagt      3060
     ctctggaaat ctcgcccagt tcgtaagaaa ttttctgtca aatcgtagct tccaggttat      3120
     tatcggaaac caccgctccc gagaaacgag cgaagaaacc ggagtgccac aaggctccgt      3180
     aattgccgtg accctgttcc taatcgggat gaacggagta ttcgaggtac tgccaaaagg      3240
     ggtatacata ctcgtctatg ccgacgatat ccttattata gtcactggtc agtatcctaa      3300
     aataataaga cgtaaactac aaactgcagt caacgcggtc gctaaatggg ctagtaacgt      3360
     cggttttgac atctccgcca acaagtgcgc aagacttcac atatgccttg acaagcatca      3420
     gccaccaaaa cagccagtga tggttcacgg tagcccgatt ccgctcaaaa actcttggaa      3480
     aatattggga gttacctttg accgcaaact caattttcgg ccacatttaa acaacgtcaa      3540
     gaatgcctgc aaaacacgat taaatttgct aaaggcaata tcgggtaaaa ggacgaaaag      3600
     cgatcggaag tcacgctacc gggtagcgga ggccgtcatc tgtagtaggc tattctacgg      3660
     actagaagca acaagtagaa actttgccga gttagtctcg gtactcgcac ctacatacaa      3720
     caatgctgta aggataatat caaaacacct cccatcgaca ccggcggact cggcatgcgt      3780
     ggaggctgga gtgctccctt ttcgctacaa agccgccgcg gtactgggaa gcagagtcgc      3840
     tagttactta gaaaaaacta gcgatgatgg ttcagagacc cctttgttaa cccaagccaa      3900
     caagatcctt cgatcgataa tcgggatcat ccttcccccg gtacttgagc gctaccggaa      3960
     cggagctaga agttggtacg ctaaagcacc aatggtagat aattatatca agatgagatt      4020
     caggagcgga tgcaacagcg agcgggtaca ggcacatttt ctcgaccgtg tccgtacaaa      4080
     atacacaatc ttcaacattc gatataccga cggttccaag tctcttggaa aagttggaat      4140
     cggttggtgt ggagtcggag tctgggaaca gaggagtctt ccagagcagt gttccgtttt      4200
     cacggcagag gcagcagcca ttttccaggc cataacacac caacaagaca taattggtcc      4260
     ggttttgata gccaccgatt cggcgagtgt cattctggcc acccaatcgg agaacaatcg      4320
     ccacccttgg atccaagcaa tccaaaatgc attggataca cacccaaaca ccactctaat      4380
     gtggataccc ggccactgcg gtatcgccgg gaacgagaat gcagaccgat gcgccaactc      4440
     cggtagggat agcacacccc tgactaacaa ggtaccgtgt gcggacatca agttatggct      4500
     gaagaaaaag acggaggaag cttggagcaa acaatggcac ctagaacgat ctcttttcac      4560
     caggaaaatc aaatgttgca ccgaacactg ggaagaccgt aaagatagaa gagaacaaat      4620
     tgtgctttcc cgccttcgaa caggacacac tagagtctcc catgatatgg gcgaaggacg      4680
     caatttccga aaactctgcg gaacatgcca agaacataat tccgtcgaac atttcctaaa      4740
     taattgtcca acactggaac acatccgaca aatgtatgga ttgggaagcg tccaatcaac      4800
     cttgcagcac gaccgtgcca gtgaaattgt cttaattagt ttccttaagg acgctaaact      4860
     ttacaacaat atctgatcat ccgtggcaaa gtaggcttgg catccggaac cgcactcagg      4920
     ttgtaagacc ctctccatcg aaacagacac tcgcatgaca cccatgatac cgaagagcaa      4980
     tagtggaaac atcggacatg aatctgttga cctaattgag cgtaaaagaa tcatctctaa      5040
     aaattgcacg aaacaccccg cctccaactt taaaggaacg gcggttatcc actctgggct      5100
     ccccgagcac cgtaactcgg gtggtaagtc ccacgtctgt ggccgtgttt taaaagctaa      5160
     tctgagcgaa tcaaccgggg aattacctgt atcgcgttcc cctctaccga cgaccgctgg      5220
     ttcagtccta aaaaaggaaa atttaaaaaa gacaatccaa acaaagctac agcattagga      5280
     cttacctgga ctgctgttac ctccccaatc tgcctaagga cagggattgg cagcctccga      5340
     cccctagggt gatacgcccc cggagcaacc tttctcagtc ccgtgcgtac cgctgctact      5400
     ttcaacgaag tttgtcggta cctctacgcg gcctctttta cccgaacaaa ccaaggtgct      5460
     aggggaacga ccggtaggct cttcgacaga accagaacga ttgatttcga tgcggtggtt      5520
     catctctcca acaaatttcc cgcggcgata atagtcgtcc ccctcgaaga gctgctttcc      5580
     gaatctgctc cctccatcga acaccagtcg cctccgctgt atttttcccc ggattctcgg      5640
     cagcctccat gtggaaaact tcttcacttt tcatacggat caaatgattg acagtgaaga      5700
     gaggaaatgc ttagatgtca aagtggaacg atggcaacga aacatctcaa gcttgcacgc      5760
     aacattcaga ggccacctag tggcaggtag aagaacaaat gaactagaaa acctccacac      5820
     tgaagaaaat gtgtttgtga ttctttgctt ttattttaat ttgtattgta aaaaattaac      5880
     tctgtaatta aacgataggc gagaccccgt ggttgggctc gaaggtaggc ccctttggtc      5940
     taacctttta tttctttttt gcgaggagtc cgtctgactc tctctgacga gtgaagaact      6000
     agccggatgt gttaaaattc acataaataa agacataaaa aaaaaa                     6046
//
ID   I-56_AAe    repbase;    DNA;    INV; 6348 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-56_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6348
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1327-1327 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..1739
FT                 /product="I-56_AAe_1p"
FT                 /translation="MAGVQSGPHGGPQNDPGGSVLVRRQPDWMLSEDELGQ
FT                 TMVLLMRRKPEDAVSQTQASSSDHHKALPNPFIVSASIDVAVGLRESSKVT
FT                 ITKEGRGTRYLLRTSSKAAMKKLCQISQLTDGTLVEVISHPTLNAVQGVVY
FT                 EADSTDVDDDTLLKYLEPQGVKSVRRIIKRVNGVIRNTPLIVMTFHGTILP
FT                 EIVLFGKLRVQVRPYYPTPMICFNCGSYGHSKKFCGQAGVCLQCSQVHSLE
FT                 DGEKCSNAPYCKNCEGSHPVTSRTCQKYKDEQNIIRMKIDRNISSAEARKI
FT                 YFAETTKETLASEVQKRLDQSESAKDKIIAELRAEIESLKTKLTTILNKQK
FT                 AKNNTESRKEPGMAQTSTKPSSSESCQSLQRLSRKDQSFKSPPSMARDSAR
FT                 RNESKNWQIDNERRTRSKSRKHAMEISPTDMNFKNIKRPSLPPDANGSTVE
FT                 VDE"
FT   CDS           1798..6231
FT                 /product="I-56_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MDKTTDTQRNIFHIGINENRFSMDNKSDYAFELHQNT
FT                 RKPLPEAALSNSCIYDQLHNFQVEPSTSSKLLVIETSDSPSARPSTPTLTR
FT                 DVPSLLDEPLAAVGVDWPSSRASILHSIASYYPTHHTSKRYVSATQTIADV
FT                 GCNSSMHNKLQNLHNPQKMSSEADTAVTSDSPSARPSTPTLTRDVPSSLDE
FT                 PLAAVGVDCPPSRASISQLPTKTLPTHRASKNVSENTLQQRENPLEYTLWN
FT                 PNRQHVQEAPPSPTSTHSSLTETPSNRRRLAIQWNINGLYRNLSDLDVLIK
FT                 GENLPTVLAIQEHHLRSNATRDLASLLRGRYTWRTLTGSNIFQGSALAVRI
FT                 DEPHSNIPVDTPMLALATKLEGRFHCTVVSIYIPVQPYPTFEHDFDHLLSN
FT                 LEPPFLILGDFNAHHRAWGSSRDDPRGRAIMRICEKYDLIVLNDGSDTYIS
FT                 GQRRTAIDLSLCSSSIIGHLRWHVHRDPAGSDHCPIEILGNDSPPCTGRRR
FT                 RWIFDRANWEAFESNIDSQIEMNREYSAVELGKIIVGAAKQHIPRTSKTPG
FT                 RQAVPWWSDEVKNAIKLRRKALRVWKRTKSDDPFHDAKKERWLEARRVCRS
FT                 IIKQAKESSWQHFIDGISPKSSTQEIWQRLNALRGKRRFSGFQLKVDGHYT
FT                 DNPKDIADELGKYFSSISSSALYSESFLAKKTKIEVNPTSFSLDTLTSDES
FT                 YNKAFTMSELLWALDHAKGKSCGPDLIAYPLLKRLPIHVKQKLLDSYNLLW
FT                 VNGCFPDEWKNSTVVPIPKVGARSKDVQDFRPISLTSCNGKIMERMVNRRL
FT                 MTCLRERKLLDPRQHAFCQGRGTSTYMTDLGNTLNQAINENLHIDIATLDL
FT                 SKAYNRVWREGVLRQLQEWGLNGNLPLFIQSFLSKRCFQVAIGHQLSRTCI
FT                 EENGVPQGSVLAVSLFLIAMESLFKVLPKDVLIFVYADDIVLVVVGNNATR
FT                 VRIKLQAAIRAVARWANSTGFQMAAEKCSISHICNHRHNPWSREVTVDNIR
FT                 IPYRKVTKILGVYFDRHLSFNHHFEQLKTNLKQRSCLVRTISRCQSTSNRK
FT                 TIMNIGNSLILSKIFYGVEATCRNTEQFKKSLSPFYNKMVREASGLLPSSP
FT                 TKSSCVEAGLLPFDSLLAKVVATRATSYAEKAKHKSPQCLLSTVANNLFKN
FT                 LTRSRLPKVLQLIRIXDRIWNMPSPRIDWGLKHKLSTKDSPLKVQAEFRST
FT                 VETNYKSHIKLYTDGSKLGNNVGFGVYGPGINKSLRLPNYCSVFSAEAAAL
FT                 KLAVEEMYPSDAPVVIFTDSASVLKSIESGKSRHPWVQLIENKYKSNISFC
FT                 WIPGHKGIAGNELADRLAAVGRTSQRQSTKVPGDDIRKYIASSIEIAWKVT
FT                 WSKETDLFLRKVKGTTEKWNDREKRKEQRILSRLRVGHTKITHAHYLGSAR
FT                 DAPECEVCLCRLTVEHLLVSCPIYDNYRNDVNLPASVRDILSNDSNTEEQL
FT                 LLFLKNSQLIDKI"
XX
SQ   Sequence 6348 BP; 1994 A; 1469 C; 1333 G; 1551 T; 1 other;
     acatcgagtt cgggatacta tacctagcta cacttgtgtc gcgatcgctc gtattatttt        60
     gcaaaaactc gtcggttttt cgactaattt aatataataa gttagttcaa ctagagactc       120
     tcgaaatacg gaacaattat cggtaaccag cacttgtgat aagggcaata tagtgcgtaa       180
     aaaccacaaa atactactgc caaatagcgt cgccaataag caaacgaatg tgacttcgcg       240
     ttattgcttt gcgttctatt gtgttgtgaa ctgaacaatc gtagtctgct tcaacccgag       300
     tgcaagttga taataaaacg gtgcctatcg gggttgtgaa ataaaagaag tgggacgtat       360
     aaaagtgtga aaaaaaaaaa cgtcatcgtg gcctcatggc cggggtccaa tcgggccccc       420
     atggggggcc acaaaatgac ccgggggggt cagttttagt gagaaggcaa ccagactgga       480
     tgttaagcga agatgagcta ggacaaacta tggtacttct gatgcgtcgt aagccagaag       540
     atgctgtctc gcaaactcaa gcctcaagca gtgatcacca taaagcacta ccaaatccgt       600
     tcattgttag tgcatcgatt gatgtagcgg taggtttaag agaatcatcg aaagtcacga       660
     ttaccaagga gggtagagga acccgttatc tgctccgtac cagctcgaag gcagcaatga       720
     aaaaattgtg ccaaatttca caactcactg acggtacttt ggttgaagta atttcccatc       780
     ccacgctgaa tgctgtgcaa ggagtggttt atgaagcgga ttccacagat gttgatgatg       840
     atactctttt gaaatatctc gaaccccaag gtgtgaaatc ggttcgccgt atcattaagc       900
     gggttaatgg agttattcgt aacacaccgc tgatagtgat gacatttcac ggaaccatcc       960
     ttcctgaaat cgtactattt ggcaaacttc gtgttcaagt gagaccctac tatccaacac      1020
     cgatgatttg ttttaattgc ggctcctacg gacactctaa aaaattctgt ggccaggcag      1080
     gtgtgtgtct tcaatgctct caagttcaca gcctagagga tggagaaaag tgcagcaatg      1140
     ctccttattg caagaattgt gagggctctc atccggttac ctcacgcaca tgccaaaagt      1200
     acaaggacga gcaaaacatc attcgcatga aaatcgaccg caatatttca tctgctgagg      1260
     cccggaaaat ctattttgca gagaccacga aggaaacatt agcaagtgag gttcaaaaga      1320
     gattagacca atctgaatct gccaaggata aaatcattgc tgaactgcgt gctgaaattg      1380
     aatcattgaa aacaaaactc actactattt tgaataaaca aaaagccaaa aataataccg      1440
     aatcacgaaa ggaaccggga atggcccaaa cttcaacgaa accatcatct tcagaatctt      1500
     gccaaagcct acaacgattg tcacgaaagg atcaaagctt caaatcccca ccctccatgg      1560
     cccgcgacag cgcaaggaga aacgaaagta aaaattggca aattgataac gaaagacgaa      1620
     cgcgaagcaa aagcaggaaa catgccatgg aaatctcccc tactgatatg aactttaaaa      1680
     acatcaaacg cccatccctt ccgccagatg ctaatggaag caccgttgaa gtagatgagt      1740
     aaccagtagc acaagtttcg caaaatcaac cctcatataa cggacctcgc aatacatatg      1800
     gacaagacaa cggataccca acggaatatc ttccatattg gaataaacga aaatcgcttt      1860
     tcaatggata ataaatcgga ttacgctttc gaacttcatc aaaacacaag aaaacctcta      1920
     ccggaagctg ccttatcaaa ttcctgtatc tatgaccagc tgcacaattt ccaagtagaa      1980
     cccagtacct cgtcgaaatt attagtcatc gaaacctctg attcgccaag cgcgaggcct      2040
     tccacgccga ccctgaccag ggatgttccg agtttactcg atgagcctct ggcggcagtc      2100
     ggcgtggact ggccctcatc aagggcaagt atccttcatt cgattgctag ttattaccca      2160
     acgcaccata cttcaaaacg ttacgtttca gcaacccaaa ctattgccga tgttggctgc      2220
     aactcctcca tgcataacaa actgcaaaat ctacacaacc cccagaagat gtcttcagaa      2280
     gcagataccg ccgtaacctc tgattcgcca agcgcgaggc cttccacgcc gaccctgacc      2340
     agggatgttc cgagctcgct cgatgagcct ctggcggcag tcggcgtgga ctgccctcca      2400
     tcaagggcaa gtatttctca attacccact aagactctcc caacgcatcg tgcttctaaa      2460
     aacgtttcag aaaacaccct acaacaacga gagaaccctc tagagtacac cctctggaac      2520
     cctaacaggc agcatgtgca agaagcgcca ccatctccaa caagtacaca cagtagccta      2580
     accgaaacac caagtaaccg ccgccgttta gctatccagt ggaatattaa cggcttatac      2640
     cgaaacctaa gcgacctgga tgtcttgatc aaaggagaaa acctaccaac agtcttggct      2700
     atacaagaac atcatctgcg ctccaacgct acacgtgatc tggcttcctt gctccggggc      2760
     cgatatacgt ggcgtacact gaccggtagc aacattttcc aaggatccgc ccttgctgta      2820
     cgtatagacg aacctcactc gaatatacct gtggacacac caatgctcgc tctggcaaca      2880
     aagcttgagg gtcgctttca ctgtaccgtg gtaagcatct atattccagt tcaaccgtac      2940
     cctacatttg aacacgactt cgaccatcta ctgtctaatt tggagccccc ttttttgatt      3000
     ctgggagact ttaatgcaca tcatagggca tggggttctt cacgggatga ccccagaggt      3060
     agagcgataa tgcggatttg cgaaaaatac gatttaatcg ttttgaacga tggtagcgat      3120
     acctacatca gcggacaaag gagaaccgct attgatttat cgttgtgttc cagcagtatt      3180
     attggtcatc tccgctggca tgttcaccgt gacccagcag gcagcgatca ctgccctata      3240
     gaaatccttg ggaatgacag ccccccatgc actggaagaa gacggcgttg gatatttgat      3300
     cgagcgaact gggaagcctt tgagtcaaac atcgacagtc aaatcgaaat gaatcgggaa      3360
     tattcagcag tagaattagg caaaataatc gttggcgcag ccaagcaaca catcccacgg      3420
     acttcgaaaa cgccaggaag acaagccgtc ccatggtgga gtgacgaggt caaaaacgcg      3480
     attaaattgc gtaggaaggc cctacgtgtc tggaagcgca caaaatcaga tgatccattt      3540
     cacgacgcga agaaggaacg ttggctggag gcaagaagag tatgtagatc aataattaag      3600
     caagctaaag aatcttcgtg gcaacatttt atcgatggta tcagccccaa atcatccact      3660
     caggaaatat ggcagcgact gaatgcctta agaggaaaaa gacgcttttc tggttttcaa      3720
     ctaaaagttg atggacatta tactgataat ccaaaggata tcgcggatga gttaggcaaa      3780
     tattttagct ctatctcttc atctgctttg tactccgaat catttttggc caagaaaaca      3840
     aaaatcgaag tcaacccaac aagcttctcc ctcgacacac tcacctctga cgaatcatac      3900
     aacaaagcgt tcactatgtc agaactactt tgggcgctag atcatgccaa gggaaaatca      3960
     tgcgggcctg acttaatagc atatccactt ctcaaaaggc tccctatcca cgtaaagcaa      4020
     aaacttctcg atagctataa tctgttatgg gtcaatggat gctttccaga tgagtggaaa      4080
     aatagtaccg tcgttccaat tcccaaagta ggagcaaggt cgaaagatgt gcaagatttt      4140
     cgtcccatca gcttaactag ttgcaacggg aaaattatgg agcgcatggt gaatcgtcgc      4200
     ttgatgacat gtctcagaga aaggaagcta ctcgaccctc gtcaacatgc cttctgtcaa      4260
     ggtcgtggca cttcaacata tatgacggac ttaggtaata cactgaacca agcgataaac      4320
     gaaaatctgc acatcgacat agctacccta gacctttcga aagcttacaa tcgagtgtgg      4380
     cgtgaaggtg ttcttcgtca gcttcaggaa tggggattga acggcaattt acccctgttt      4440
     attcaatcct tcttatcaaa acgttgcttc caagtagcaa taggacatca gttatcacgc      4500
     acctgtatag aagaaaacgg agttcctcaa ggctcggtct tggcagtatc tttgtttttg      4560
     atcgctatgg agtctctctt caaagttctc ccgaaagatg tgctaatatt cgtatatgca      4620
     gatgacatag tcttagttgt tgtgggaaac aacgcaactc gagttcgcat caagcttcaa      4680
     gcagctatta gagcagttgc aaggtgggca aactcaactg gatttcaaat ggcggcagag      4740
     aaatgttcta tctctcacat atgtaaccac cggcataatc catggtctag ggaagtaaca      4800
     gtggacaata ttcgcattcc atatagaaag gtgacaaaaa tactaggagt gtacttcgac      4860
     agacatcttt cgtttaacca tcacttcgaa cagctaaaaa ccaatctgaa acagagaagc      4920
     tgtttagttc ggacaattag tcggtgtcaa tccaccagta accggaaaac aatcatgaac      4980
     attggcaata gtctgatttt gtcaaaaatc ttctacggtg tagaagcaac atgccgcaat      5040
     actgaacaat tcaaaaaatc gctttcacca ttttataaca aaatggtacg agaagcctca      5100
     ggattactcc cgtcgtcacc aacgaaatca tcgtgcgtag aggctggact tctcccattt      5160
     gattctttgt tagcaaaagt tgttgccaca cgtgcaacat catatgccga aaaagcgaag      5220
     cataaatctc cccaatgtct tttatcaacg gttgctaata atttgttcaa aaatctaaca      5280
     agaagtcgac taccaaaagt tctacagctg atccgaataw ccgatcgcat atggaatatg      5340
     cccagcccta gaatcgactg gggactgaaa cataaactct caacaaaaga ttctccactg      5400
     aaagtacaag ccgagttccg ctcaacagta gaaacaaatt acaaatccca cattaaactt      5460
     tatacagatg gttcgaagct cggaaacaat gtaggctttg gggtatatgg tccgggtatc      5520
     aacaaatcgc ttcggttacc caattattgc tccgttttct ccgctgaggc agccgccttg      5580
     aagctagccg ttgaagaaat gtatccatca gatgctcctg tagtgatttt tactgactct      5640
     gccagtgtcc taaagtcaat cgagagtggg aaatcacgac atccatgggt acagctcatt      5700
     gaaaataagt ataaaagcaa catatcattc tgctggattc ctggacacaa gggaattgct      5760
     ggcaatgaat tggctgatag actcgcagct gtcggtagaa ccagccagcg tcaaagcacc      5820
     aaggtaccag gtgacgacat tcgaaaatat attgcgtcat ctatagaaat tgcctggaaa      5880
     gttacgtggt cgaaggaaac tgacctgttc ttgaggaagg tgaaaggaac tacagaaaag      5940
     tggaacgaca gagagaagcg caaggagcaa aggattttat cccgtctgag agttggacat      6000
     acaaaaataa cacacgccca ctatttagga agcgctcgtg atgctcctga atgtgaagta      6060
     tgcctgtgtc gcctgacagt ggagcacttg cttgtatcct gcccaatcta cgacaactat      6120
     cggaacgatg ttaacctacc tgcatcagta cgagatattc taagtaacga ttctaacact      6180
     gaagaacaac tgttgctgtt tcttaaaaat agtcaactta ttgataagat ttgattgtat      6240
     aggctaatgc aaaaccaatt tgtttccttt ttcttctcat tagaggtgaa tgaatttata      6300
     aaatttaaaa cctcttaaat ataataataa taataataat aataataa                   6348
//
ID   I-57_AAe    repbase;    DNA;    INV; 6198 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-57_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6198
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1328-1328 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           381..1733
FT                 /product="I-57_AAe_1p"
FT                 /translation="MAVAAHPPPWGVVEEPPNLALLGGNQPNWMLRNDEMG
FT                 QTLVLVMQVKRNESDVDSATTINEISRNGTRLPHAFIVGKSIEAVIGVEAA
FT                 RAMQSIREARGLRYLLRTNSHTTYQKIQQLDTLCDGTKVEVFPHPTMNTIQ
FT                 GIVFEPDTIDLDEQTILEFLSSQGVKGVRRITKQVGRGRQNTPLLILTFHG
FT                 TKLPEDVYFGLLKVPTRKYYPTPMLCFNCGCFGHTKKACSNDKICLHCSQI
FT                 HEMVDDIPCSNDAHCKNCQGCHSAFSKTCPIYVEEDKIMRYRVDQNISLGE
FT                 ARKIFKAQKEQRTYASVVQQRLIEQSSEKDQIIQALREQLDAVKAELESLK
FT                 KQLQKQATDEHMLPSTSSKRKKSDEKMITSEQNTKASTTTASSSFNETHEH
FT                 QHNTRQSRKDLGNTSKENKKQKDISKMIDCSSPDRNRSRSNRRNGVELRQK
FT                 DKKLNK"
FT   CDS           1786..6099
FT                 /product="I-57_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MNPDLSTLFFQRDSIEIMDFDPSITTDFEIGNFQQHQ
FT                 QDQTSENVRSNENYINFNGNIQHTNSFGEARHSMSTPVRNVSGSPDYLREV
FT                 VDVACPSLQASSTSINICPHNPCRPFSTLSACSSTNINVSLPSGTPLFSGR
FT                 MLNDCSTGARHSMSTPXRNVSGLPDYLREVVDVACPPPQASKNNFEDSSGS
FT                 CSVSLIPEVNHMTSVANNVATNHQRDSSSSSSSSGRVSISNGTRRYQRVAI
FT                 QWNINGLYNNLPDLETLINKDPPAVLALQEIHNCKARNLNQILRGSYRWCT
FT                 KNGPTPYANVALAIHQSVPSTSVKINSALIVSAAIIEVPFRLTVASIYIPS
FT                 GVTNLEQQLNDLIEQLEEPVLIMGDMNSHHYAWGSHKTDKRGEIILKICEE
FT                 KNWIIMNDGTSTFMRGNQTSAIDVTMVSISALSKLRWKIKTDSMGSDHYPI
FT                 EIFGSGTPTNISRRRRWKYDAADWETYEQRILAAISPEKSYTIDEITDIIF
FT                 SAASSSIPQTSSAPGKKATFWWNEETRIAVKKRRKALRAFKRLAVDHPDKE
FT                 NAKEELKLRRSECRSIVKNAKKESWESFIDGISSSQSSADMWRRINSLSGK
FT                 KRIAGMSIRHGDTVSTDPDTVSNTLADYFQKISSEDLYSSEFKNLNGTAKK
FT                 ALSDIIIPDDQGIVDYNQPFSTEELFSALDTGTGKSSGPDEVGYPMIRRLP
FT                 FRAKLALLDAYNVVWTTGNYPDGWRRSLVTAIPKKGSKSMEPDDYRPISLT
FT                 SCIGKVMERMINRRLSTILREKNLLDERQYAFQRGKGAGIYLANLGQVLHD
FT                 ALSRNLHVDIATLDLAKAYNRVWNPGVLKTLIDWGITGNMVRFVKEFLSNR
FT                 TFQVSVGNHRSQPKHEETGVPQGSVLAVTLFLVSMNSVFERLPENIFIFVY
FT                 ADDILLVTVGKQPKTLRKKIQAAVRAVAQWSNINGFNMSLEKCAITHCCNQ
FT                 RHHPWKSPVTVDSVPVPYRKSIRVLGVHIDRQVNFALHFENVKKASEGWMR
FT                 IIRAISGRHQNCNRGTILRVMNATIVSRLVYGIEITCRSAISLIDKLGPVY
FT                 NRCIRFCSGLLPSAPTVATYAEAGVLPFDLLITKIVSNRANNFLEKTYGER
FT                 EEVFLLMEAMNLLQKYANMDFPPVAEIHRVGDRRRDHAGPKIDWTMKNHVR
FT                 AHDPKNKVLSCFNALISDKYKNHISIYTDGSRANGQVGIGVYGTTARAARL
FT                 PDSCSVFSAEAAAILCAISMISNRPTVIFTDSASVLAALESGRSTHPWVQR
FT                 IESSVPDTTTLCWVPGHCGIRGNEEADRLAADGRTALFFMTEVPALDVKNT
FT                 IAAGVQAAWTIRWRNTRNVFLRKIKGEPDKWTDRYSWREQRVMSRLRVGHT
FT                 RLTHAHFLSKVEQPRCVPCGQALTVEHILLNCVQYEEERTFTNLPTTIRDI
FT                 LCNDRDEEEKLLRFLRVSGLYDCI"
XX
SQ   Sequence 6198 BP; 1959 A; 1286 C; 1381 G; 1569 T; 3 other;
     cagttttgat cgggttacct gcatacaaaa acagaaacct acatcgctgt tcgatttcga        60
     ccgattttga gtgttatatt gaacatttag ttcggtaaat tgattcagat agttaacaga       120
     tcgttacggt taacgtagat tataaaatct actagtttcg cggcgtaata taaggaaaaa       180
     ctcaactttt gccccgtgag aagagcgcac ttcgtgtggg ccgtatacat agtgaaattt       240
     gtattgcttt tgttcgccac atctacccga acaaacgtag ctgcagtgag tgaccgtaaa       300
     gatacctttc aatccgtgct acgttcgtta aatatttgct ctgagtgttt ggtctaagac       360
     aatctgagtg ggtcagctta atggcggtgg cagcacaccc cccaccttgg ggggtggtgg       420
     aagagccccc aaatttggca ctacttggag gaaaccagcc aaactggatg ttaagaaacg       480
     atgaaatggg tcaaaccttg gtactcgtga tgcaagtaaa acggaatgaa agtgatgttg       540
     attctgccac taccatcaac gagatcagca gaaatggaac acgtttacct catgctttca       600
     tcgttggcaa atcgattgaa gccgttatcg gagtagaggc agctcgtgca atgcaatcaa       660
     tccgagaggc tcgtggactc cgctacctgc tgcgtacaaa ttctcacacc acataccaaa       720
     aaattcaaca actggacact ttgtgtgatg gtaccaaagt tgaagtcttt ccacatccaa       780
     ccatgaatac tattcaggga atagtattcg agccagacac gatagatttg gacgagcaga       840
     caattctgga atttctcagc tcgcagggcg ttaaaggcgt aagaagaatc accaaacagg       900
     ttggtagagg gagacagaac actcctttgc taattctgac cttccatgga accaaattgc       960
     cagaggatgt gtatttcgga ttactaaagg taccaacaag gaagtattat ccgacaccaa      1020
     tgctttgctt caattgtggt tgctttggac atacgaagaa agcatgctcc aacgataaga      1080
     tttgcctgca ttgctctcaa attcacgaga tggtcgacga tatcccctgt tctaacgacg      1140
     ctcactgcaa aaattgtcag ggttgtcatt ctgcattttc caaaacatgt ccgatctatg      1200
     ttgaggaaga taagataatg cgataccgtg tagatcagaa tatcagcctc ggtgaagctc      1260
     gcaaaatatt caaagctcaa aaggaacagc gaacatatgc tagtgtcgtg cagcaacgtc      1320
     ttattgaaca atcctctgaa aaagaccaaa tcattcaggc cctacgtgag caacttgatg      1380
     ctgtcaaagc cgaactggaa agtttgaaga aacaacttca gaagcaagca acagacgaac      1440
     atatgttgcc atctaccagc agcaaacgaa agaagtctga tgagaagatg atcacatcag      1500
     aacaaaacac gaaggcctcc acgacgactg catcaagctc atttaacgaa acccatgaac      1560
     atcaacataa cacgcgacaa tcgaggaaag atttaggaaa cacatcgaaa gaaaataaga      1620
     agcaaaaaga catcagtaaa atgatcgatt gcagcagccc tgaccggaat cgtagcagaa      1680
     gtaataggag gaatggtgtc gaactacggc aaaaggacaa aaaactgaac aaatgatgtc      1740
     tacsgaccaa aaaaacaaca attttccagt tattaagaac ctgctatgaa cccggacttg      1800
     agtacattat tttttcaacg agactccatc gagattatgg attttgaccc cagcatcaca      1860
     acggactttg agatcggaaa ttttcaacaa catcagcagg atcaaacttc tgaaaatgtc      1920
     agatcaaacg aaaactacat caatttcaac ggaaacattc agcatactaa cagcttcggt      1980
     gaagcaaggc attccatgtc gacccctgtg cggaacgtct caggctctcc tgattatctc      2040
     cgcgaggtgg tcgatgtggc ttgcccatca ttacaggcaa gttcaacaag cataaacatt      2100
     tgtccacaca atccctgtcg acccttctcc acgctttcag catgtagcag cacaaacatc      2160
     aatgtgtcgt taccttctgg gacaccttta ttcagcggac gcatgctcaa cgattgctca      2220
     actggagcaa ggcattccat gtcgacccct stgcggaacg tctcaggtct tcctgattat      2280
     ctccgtgagg tggtcgatgt ggcttgccca ccacctcagg caagtaaaaa taattttgag      2340
     gattcgagtg gttcctgttc cgtatcacta attccagagg tcaaccatat gacatctgtt      2400
     gcaaataatg tggcaactaa ccatcagcgt gattcatcgt cgtcgtcgag ttccagcggc      2460
     cgcgtgtcta tatcgaatgg cacccgccga taccagaggg ttgctattca atggaacatc      2520
     aacggacttt acaacaatct tcctgatctc gaaactctaa tcaacaagga tccacctgcg      2580
     gttcttgctc tgcaggaaat tcacaactgt aaagcaagga atctcaatca aatattacgt      2640
     gggagttatc gctggtgcac gaaaaacgga ccaacaccgt atgcgaatgt tgcgttagca      2700
     attcatcaat ctgtaccgag tacatccgtg aagattaact ctgcgttgat tgtgtctgca      2760
     gccataattg aagtaccttt ccgtttaacc gtggcttcca tatacattcc ttcaggtgtg      2820
     accaatttag aacaacagtt gaatgatctt attgaacaac tagaagaacc tgttcttatt      2880
     atgggtgata tgaatagtca ccattatgca tggggatcac acaaaactga caaaagaggc      2940
     gaaataatct taaaaatctg tgaggagaaa aactggatta taatgaatga tggaacttca      3000
     actttcatga gaggtaacca aacgtccgca attgatgtta ctatggtcag tatttctgcg      3060
     cttagtaagc tacgatggaa aatcaagaca gattctatgg gaagtgatca ttatccgatt      3120
     gaaattttcg gcagtggtac tccaacaaat atttcgcgcc gtcggagatg gaaatatgat      3180
     gctgcggatt gggaaacgta cgagcagcga atcctggcag ccattagtcc ggaaaaatcg      3240
     tacaccattg atgaaattac tgatataata ttttcggcag cttcgtcgag catccctcaa      3300
     actagtagtg ctccagggaa aaaagctacg ttctggtgga atgaggaaac cagaatagcg      3360
     gtcaaaaaga gaagaaaagc tcttagagca ttcaaaagat tggctgttga tcatcccgat      3420
     aaagaaaacg ctaaggaaga gttgaaactg aggcgtagtg aatgtagatc catcgtaaaa      3480
     aatgcaaaaa aggaatcatg ggagagtttt atcgatggca tcagcagctc ccaaagttca      3540
     gcggatatgt ggcgaagaat aaattcgctg agtggtaaga agcgcatagc gggtatgtcc      3600
     atccgtcatg gcgatacagt tagtacagat cctgatacgg tttccaatac actggctgac      3660
     tattttcaaa aaatctcatc cgaagattta tatagctccg aattcaaaaa tttaaacggg      3720
     acggcaaaaa aagcgctgag tgacattatc attcctgatg accaaggaat tgtcgactat      3780
     aaccaaccgt tttcaacgga agaattgttt tctgcattgg atactggtac cggaaaatcg      3840
     tctggtcctg atgaagtagg gtatccaatg atcagaagat taccattcag agccaaactc      3900
     gcactgttgg atgcatacaa cgttgtctgg actaccggta actacccaga tggatggcga      3960
     agaagtctcg tcaccgctat tccaaaaaag ggctcgaagt caatggaacc tgatgattat      4020
     agacccattt ctttaacaag ctgtattgga aaagtgatgg agagaatgat aaacaggcga      4080
     ttatcgacaa ttttacggga aaagaatcta ttagatgaac gtcaatatgc ctttcaacga      4140
     ggtaaaggag ccggaatata tttggcmaat ttaggtcaag tgctgcatga cgcgctcagc      4200
     agaaacttgc atgtggacat agctacattg gatctagcga aagcttataa cagggtttgg      4260
     aatccaggag tgttgaaaac attaatcgat tggggtataa ccggcaatat ggtgagattc      4320
     gtcaaggaat ttctttcaaa ccgaactttc caagtatctg ttgggaatca tcgatctcaa      4380
     ccaaaacatg aagaaaccgg tgttcctcag ggatcagttt tggctgtaac cctgtttctc      4440
     gtttctatga acagcgtttt tgagcgacta ccagaaaata tcttcatttt tgtatacgca      4500
     gatgatattt tattggtgac tgtgggcaaa caacctaaga cattgcggaa gaaaatccaa      4560
     gcagcggttc gtgctgttgc acagtggtcc aacatcaatg gcttcaatat gtctttggaa      4620
     aaatgcgcga ttactcactg ctgcaatcag aggcaccatc catggaaatc accagtaact      4680
     gttgattccg tccctgttcc gtataggaag agcattcgag tattaggggt acacattgat      4740
     aggcaggtga actttgcttt gcattttgaa aatgtaaaga aagcgtcaga aggatggatg      4800
     agaatcattc gtgcaataag cggaaggcat caaaactgta acagaggcac tattttacga      4860
     gtgatgaacg caaccattgt tagtcgtttg gtttatggaa tagaaataac atgtaggtca      4920
     gcaatcagtt taattgataa gttaggacca gtttacaatc gttgtattag attttgctca      4980
     ggcttactcc caagtgcacc aactgttgca acatatgcgg aagccggggt acttcctttc      5040
     gacctactta tcactaaaat tgtctcgaac agagctaata actttctaga aaagacatat      5100
     ggagagagag aggaagtctt cctcctaatg gaggccatga acctcctcca aaaatatgcc      5160
     aacatggatt tccctccggt agctgagatc catcgggtgg gagataggcg tcgggaccat      5220
     gctggaccca aaatagactg gacgatgaaa aaccatgtaa gggctcatga cccgaaaaac      5280
     aaagtgttgt cctgctttaa tgccttaatt agtgataaat acaaaaacca cattagcatt      5340
     tacactgatg gatctcgagc aaatggacaa gtcggtattg gggtctacgg tacaacagca      5400
     cgtgcggcta gattaccaga ttcttgctcc gttttttcag cagaagctgc agctatactg      5460
     tgcgccatat caatgatttc caacaggcct acggtcattt tcactgactc ggctagcgtt      5520
     ttagcggcat tggaaagtgg tagatcgaca catccatggg tgcaacgtat tgagagttca      5580
     gtccctgaca ctaccactct gtgttgggtc ccaggccact gtggtatacg cggaaacgaa      5640
     gaagctgatc gtttggcagc agatggaaga acggcgttgt tttttatgac agaggtgcca      5700
     gctctggacg tgaagaatac gatagcagct ggagtgcaag cagcatggac aattcgatgg      5760
     agaaacacgc gtaatgtttt cttacgaaaa atcaagggtg aaccagataa atggacagac      5820
     cgatatagtt ggcgtgaaca gcgtgttatg tcccgcctaa gagtagggca cactcgttta      5880
     acacatgcac attttctttc aaaggttgaa caaccaagat gtgtaccttg tggacaggct      5940
     cttacagtgg agcacatcct tctaaactgc gtccaatatg aagaagagag aactttcaca      6000
     aacttgccta caacaataag ggatatttta tgcaacgacc gagacgaaga agaaaaacta      6060
     cttagattct taagagtatc tggattgtac gattgtatat gaaaatgtag cggaacaaaa      6120
     ttatatttta atatttcttg aggtgaaccg gccgccaggt tgaaagcctc tttaataaag      6180
     acaaaaaaaa aaaaaaaa                                                    6198
//
ID   I-58_AAe    repbase;    DNA;    INV; 7571 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-58_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7571
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1329-1329 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
CC   The 3' ~5000 bp is ~91% identical, but the 5' 2500 bp is less
CC   than 70% identical to I_Ele14.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..2375
FT                 /product="I-58_AAe_1p"
FT                 /translation="MSASSPSLNPGDPGGPGGGYQFNRINGEYSNRLLPEF
FT                 MDRDGNAGQLQFLRMKATTGAIPNDPFLLRLSVEKHVGGQISGAFKENKGI
FT                 SYVLKVRSQAQFDKLLKMKKLADGTEIEIEEHSTLNQVKCVVSNADTIGLE
FT                 ESYLVDQLHNQKVKEVRRIKRRNSNTNALENTPTLILTISGTVIPEHIDFG
FT                 WSRCRTRHYYPSPMQCYRCWTFGHTGKRCTAPSRVCGRCSGVHPEDQTPEP
FT                 SNDQGATVTPTPRTRSSCSEPPCCKTCDNSTQHALSSRECPAYKKENAIQI
FT                 IRVDEGISYPQARREFEAREALKSSEKRNTYAGVASSSKDAEITELKNTVK
FT                 KLENDAVRREKRMADMELALTNRQVSGRLEAAKDHGPIQELIRQVAELTAT
FT                 VKQLQMDLREKDLTIAELREKQLLTPRNSVIPTADPTQQPTPTPQEASPNT
FT                 TISSNSPKLKNVDPAMTSQVADWIRNLDQEEKEAKKLTIDKGAIPKKQKKG
FT                 KGRSTAAIPSNEGNCLTQPHSLLSRQGERGEFFAKKMDIEDSDNSLESHET
FT                 AASSTVGSKRSHIPISSAESTENSGDETRFTRSKPKLLRETVVDPSTK"
FT   CDS           2128..7329
FT                 /product="I-58_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="PSRTPSLAAKVKEASFLPKKWISRIAITRLNHTRQQH
FT                 RPRSAPRGATSPFPVQNPPKTLATKPDSRGANPNFSVKPWSTRRRNSLPTN
FT                 YVALEKPEKKTEFGTRPTILFTTTHTIAGDPSPEQNERPRTSSNVEEVNDN
FT                 STQGNENAAEETSGNRGPPSAEVTPQPELGNNPRHPSVLSAEGPEDGRERS
FT                 GPVGAEAIGPPELADNPGLPIRSGRGTEKGGNAYPPLDNEGIKPSLTKHKQ
FT                 QDHRRTSDNEGFKTPPRRNPSRKRNPPDRYSPGWHNQPRSASKPDPPDPHQ
FT                 GLPGHLGSKTPSGKPHRTQQILRPPASVPVFPKPFSVLELTNAEAYDKTIA
FT                 TRDKMIAPPAAGPSSQTASSDPYQDRPGHLGRKNPSGKAHAVPLRPQPVSP
FT                 TPGGTQIPPSATLRRKPTSTLIQSQQHSLMRFPSSPVGNDCLAVAPEIPVV
FT                 VNPMPGPTLGGAPLESATRTLCPPNCFSQXYFSTAAPSPLPVVGSTSGPTL
FT                 GGALSGSVSSNFIGSNNSKENSLSSFPVPALPTSHNFILQWNLNGYRSRLC
FT                 DLELIIQNNQPWILALQETNNISADEMGRTLGGQYSWTVKRLANQRHSAAI
FT                 GIRKGIPHKILDLPSDLPIVGIQILGSPSVSVACAYLPCGKIPNLHGHIHD
FT                 CLQALPEPRIFLGDFNSHHPVWGSPKADTRGTNLIDALEEEDMLILNDGSP
FT                 TFFNGHYSSEIDVTAVSCSFARNIQWSVSSDLHGSDHYPIRIALTNGAAIP
FT                 KNTRRPRWKYEKADWAEYDLLIRSALINSPPENMGDFISTIVESAKATIPL
FT                 TSCTPGRKALRWWSDETKAAVKARRKALRQLRRLPLDHPDRQFTLENYRKL
FT                 HLECRNIIGDAKKATWESFLESMNASQTTSELWNRVNALNGKRKTTPLTLQ
FT                 VQGKAMSDPEAVASELGKYFASLSAIESYETHFLNSVKPSTSTIKNFIIPP
FT                 NTADPEMEQPFSARELSFALSRSNGKSAGPDEVGYPLLKNLPSVGKLALLD
FT                 LYNKIWVNNDFPSAWKESLVVPIPKANIPTRDPTKFRPISLTCCAGKVMER
FT                 MVNRRLRYHLEANGLLDFRQHAFRQGFGTSTYFAGLSDVLKEAYDKGNHAE
FT                 VISLDISKAFNRTWTPLVLEQLAAWGIGGRTLHFVRNFLXDRTFQVVIGNT
FT                 KSSSFPEETGVPQGSVLAVTLFLIAMNGVFSRLPKNIYVFVYADDIVIVVC
FT                 GSTPTMTRIRAQTAVKSVAKWASDNGFQLSASKSIRCHICPSGHRITGPDI
FT                 TIDGQPIPLRKTVRILGVTVDRALSFRQHFDTVKSACRSRLNLIKSISRPH
FT                 RSNNRKIRFRVAHAIVDSRLVYGLELTSIAIDRLVEVLSPVYNSYIRIISG
FT                 LLPSTPSDSACVEAGLLPFRIFIRASICCKTVAFLSKTAGEDRVFLLDEGN
FT                 RALSTAANLSLPPVTRVHWLGDRSWRSVPPKIDNKIKNSFSAGSNSAALRR
FT                 SVAELLQISYSDFALRYSDGSLTSAGVGIGVAGDIPDVSMSLPSQCSVFSA
FT                 EAAAAFIAATTPSDRSILVLTDSASVISALQSDSPSHPWIQAILKYALPDT
FT                 VFTWIPGHCGVPGNEMADHLAKSGLSGQRYTSEVPFMDLKRWIKSIFRQHW
FT                 EDSWYRTRTLFLRKIKNTTTTWSDLPILKDQRILSRLRTGHTLISHNMGGG
FT                 PFHKECESCHIPASVDHVLCACPIYEHLRQIHGLSDNIGEVLRDDATTIAA
FT                 LLSFLHDANLYSSI"
XX
SQ   Sequence 7571 BP; 2040 A; 2079 C; 1755 G; 1695 T; 2 other;
     cagttgacag ctcgtgttcg gcgcgttcgg atcagttttt tcactgctcc cgactaattt        60
     tgcgagtgag ttctcggagt gcattttctg tggtttttcg cttttccacg ttttcccaac       120
     ggtattttcg ttttgttcgc gatcgatttg ccgttttccg gggggttttt cacgcgtttt       180
     cgccgtattt tcggtggtga aagtgctccc acgtggagga aaaaaggaga acaaaagaag       240
     tgaaagcgtt cgttttaacc cgccgcgtgt gctttcgggg attataaccc aaaaagcaga       300
     gctagtgaga gtgagcgtgg gcattacgcc ttggggagat tgaagtgaaa aaatcttccg       360
     gatcttttcc ggaagaattt agtgctgggc cacggggcct gaagaatctt ttctacagag       420
     cttcgtgaaa ggtgtgctgt accgtagtgt ggccttcttt aggcctttct tggatcccta       480
     cgaggaccca cgaccaccag ctctgcggac acctccgcta caaaagccag caacttaagg       540
     ccggtcgact gtgtggtcca ccaccaccat agtcccggcc cgccggcgcc atgtcggcga       600
     gcagcccttc gctcaacccc ggggacccag ggggccccgg cggaggctac cagttcaaca       660
     ggataaacgg tgagtactcc aaccgattac tacctgagtt catggacagg gacgggaatg       720
     caggacaact gcaattccta agaatgaaag cgacaaccgg agccatcccc aatgatccgt       780
     tccttctgcg actttccgtg gagaaacacg ttggtgggca gattagcggc gccttcaagg       840
     agaataaagg catctcctac gtactgaagg tccgcagtca ggcccagttc gacaagttat       900
     tgaagatgaa gaagctggct gatggaaccg agattgagat tgaggagcac tcgacgctca       960
     accaagtcaa gtgtgtcgtg tccaacgctg acacgatagg actggaggaa agctacttgg      1020
     tggaccagct tcataaccag aaggtcaagg aagtgcgcag gatcaagagg cgaaacagca      1080
     acaccaacgc cctggaaaac accccgaccc taatcttgac gataagcggc accgtgatcc      1140
     cggagcatat cgacttcggg tggtcaagat gccggacgag gcactactac cccagcccga      1200
     tgcagtgcta ccggtgctgg actttcggac ataccgggaa gcgctgcacg gccccctcca      1260
     gggtctgcgg cagatgtagt ggagtacacc ctgaggatca aacccccgaa ccatcaaacg      1320
     accaaggtgc aacagtaaca ccgacgccaa ggaccaggag ttcgtgcagc gagccccctt      1380
     gctgcaagac ctgtgacaac agcacgcagc acgcactttc cagccgagaa tgtcccgctt      1440
     ataagaagga aaacgccatt caaattattc gtgttgacga aggaatctcg tacccgcagg      1500
     cgcgccgaga attcgaagca cgagaagctt tgaaaagcag tgagaagcgg aacacttatg      1560
     caggtgtcgc tagtagcagc aaggacgcgg agatcaccga actcaagaac acggtaaaga      1620
     agctggaaaa cgacgccgtc cgtcgagaaa agagaatggc cgatatggag ctggccctaa      1680
     ccaaccgcca agttagcgga aggctagagg cggccaagga ccatggcccc attcaggaat      1740
     tgatccggca ggtagcagaa ctaaccgcca ccgtgaagca gctccaaatg gatctgagag      1800
     aaaaagacct gaccattgcg gaactaaggg agaagcaatt gctgacccca aggaactccg      1860
     taatcccaac cgctgatccc acccaacagc caacacctac cccgcaagaa gcctcaccaa      1920
     acacgaccat cagtagcaac agtcccaagt tgaaaaatgt cgacccagca atgacctccc      1980
     aggtcgcgga ctggatccgt aacctcgatc aggaggagaa ggaagcgaag aaactgacta      2040
     tcgacaaggg agccattccg aaaaagcaaa agaaaggaaa aggaagaagc accgctgcca      2100
     ttccttcgaa cgaaggaaac tgtctgaccc agccgcactc cctccttagc cgccaaggtg      2160
     aaagaggcga gttttttgcc aaaaaaatgg atatcgagga tagcgataac tcgcttgaat      2220
     cacacgagac agcagcatcg tccacggtcg gctccaagag gagccacatc cccatttcca      2280
     gtgcagaatc caccgaaaac tctggcgacg aaacccgatt cacgaggagc aaacccaaac      2340
     ttctccgtga aaccgtggtc gacccgtcga cgaaatagcc tgcccactaa ctacgtcgct      2400
     ctagaaaaac cagaaaaaaa aaccgagttt ggtacacgac ccaccatcct tttcacgacc      2460
     actcacacca tcgctggtga cccatcaccg gagcaaaacg agcgaccaag aaccagctcc      2520
     aatgtagaag aagtaaacga caactcaact caaggcaacg agaacgccgc agaagagacc      2580
     tcgggcaacc gaggcccccc cagtgcggaa gttacacccc aaccggaact agggaacaac      2640
     ccccggcacc cgagtgtcct ctctgccgaa ggcccagagg acggtagaga acggtcaggc      2700
     cccgtcggtg cggaagctat tggtccaccg gaactggcgg acaaccctgg ccttcccatc      2760
     cggtctggaa gagggacgga aaagggcgga aacgcctatc cccctttgga caacgaggga      2820
     atcaagccat ctttaacaaa acacaagcaa caagatcacc gcagaacatc ggacaacgag      2880
     ggattcaaga caccaccacg caggaacccc tcccgcaaga ggaacccgcc ggaccgctac      2940
     agccccggct ggcacaacca acccaggtca gcgagcaagc cggatccacc cgacccccat      3000
     cagggtctgc ctgggcacct cggaagtaaa actccgagtg gtaagcccca ccgcacccag      3060
     caaatactcc gcccgccagc ttcagttcca gtttttccga aaccgttttc agtacttgaa      3120
     cttacaaacg cggaagcata cgataaaacg atcgccaccc gcgacaaaat gatagctcca      3180
     cccgctgctg gcccctcaag ccaaacagcc tcctcagatc cctatcagga tcgccctggg      3240
     cacctcggac gtaaaaatcc gagcggtaag gcccacgcag tcccgctgcg accccaaccg      3300
     gtaagcccga cgccaggagg aacacagata cccccttctg caacgctgcg aaggaaacca      3360
     acctccacct taatccagtc acagcagcac tccttgatga ggtttcctag cagccctgtt      3420
     ggaaacgact gtcttgccgt agctcccgaa attccggtag tagtaaatcc catgccgggt      3480
     cccacgcttg gtggggctcc gttggaatca gctactagaa ccttatgtcc tcccaattgc      3540
     ttttcccaaw cctacttttc taccgcagct ccttcacctc tgccagttgt gggttccaca      3600
     tcgggaccta cgctcggtgg agctctgtcg gggtctgtat ccagcaattt catcggttct      3660
     aataattcca aagaaaattc tctctcaagt tttccggttc ctgctcttcc tacgtcacat      3720
     aatttcattc tgcaatggaa tttgaatggc tacaggtctc gtctttgcga tcttgaattg      3780
     attatccaga ataatcaacc ttggatctta gcccttcaag aaactaataa tatatctgcc      3840
     gatgaaatgg gtcgcacgct cggcggccaa tattcttgga cagtcaaacg attagcaaat      3900
     caacgacact ccgcggcaat tggaattcgt aaaggaattc ctcacaaaat tcttgatcta      3960
     ccttccgacc ttcctatagt tgggatacag atactaggtt ccccgtcggt ctcagtagcc      4020
     tgcgcttatc taccgtgtgg caaaattcca aatcttcacg gtcacattca tgattgtctt      4080
     caagccctcc ccgaacctcg aatctttctt ggtgatttca acagtcacca tccggtctgg      4140
     ggctccccca aggccgatac gcgcggcacc aacttaattg acgccttaga agaggaagac      4200
     atgttgattc taaacgatgg ttcaccaact tttttcaatg gtcattattc cagcgaaatt      4260
     gacgtcaccg cagtatcgtg ttctttcgcc agaaacattc agtggagtgt aagttctgac      4320
     cttcatggta gtgatcacta tccaatccga atagcgttga ctaatggtgc ggccattcca      4380
     aagaacacga gaagacccag atggaagtac gagaaagccg attgggctga gtacgatctg      4440
     cttatccgtt ccgcccttat caacagtcct cctgaaaaca tgggtgactt catttcaacc      4500
     atagttgaat ccgctaaggc cactattccg ctcaccagct gcacccctgg ccggaaggcc      4560
     cttcgatggt ggtctgatga aaccaaggct gctgtaaaag cccgcagaaa agcgctgcgt      4620
     caacttcgaa ggcttccact tgaccacccg gacaggcagt ttaccttaga gaattatcgc      4680
     aagctccacc tagaatgtcg gaacatcatc ggtgatgcta agaaggccac gtgggagagt      4740
     tttttggaga gcatgaatgc atctcaaact accagtgaac tatggaatcg agtgaatgct      4800
     ttgaatggaa agcgaaaaac tacaccgctc actctacaag tgcaagggaa ggccatgtct      4860
     gatccagaag cagttgcaag tgaacttggt aaatattttg ccagcctatc tgccattgaa      4920
     agctacgaga cccactttct taattctgta aaaccttcca cttccactat caagaatttt      4980
     attattccac ctaacactgc cgatcctgaa atggaacaac cattttcagc cagagaactc      5040
     tccttcgcgc ttagtcggag caatggtaag tcagcgggtc ccgatgaagt tggttatccg      5100
     ctcctcaaaa accttcccag tgtcggaaaa cttgcgctgt tagatcttta taacaagatc      5160
     tgggtcaata atgatttccc ttctgcttgg aaagaaagtc tagtagtccc tatacctaag      5220
     gctaacatcc ccacccgcga tccaactaag tttcgaccaa tatccttgac ctgctgtgcc      5280
     ggaaaagtaa tggaaagaat ggtaaatcga aggctaagat atcacttgga agccaacggg      5340
     ctattggact tccgccagca tgcctttcgc caaggatttg gaacatctac ttacttcgca      5400
     ggtctcagtg atgtcctcaa ggaggcttac gataaaggta atcatgccga agtaatttca      5460
     cttgacatct ctaaggcgtt taacagaacg tggaccccac ttgttctgga acaactggct      5520
     gcttggggca taggaggaag aaccctgcat tttgtgcgca atttccttkc cgataggact      5580
     ttccaagtag ttattgggaa cacaaagtca tcatccttcc ctgaagaaac aggcgttccc      5640
     cagggttctg tgctagctgt aactcttttt ttgatcgcta tgaacggcgt cttctcccgt      5700
     ctgccgaaga acatatatgt attcgtttat gcggatgata tagttatcgt tgtttgtgga      5760
     tcaactccta ctatgacgcg gatccgagct caaaccgcag tcaaatcggt agcgaaatgg      5820
     gcatcagata atggtttcca actgtccgcc agtaagagca tccgttgcca catttgtcca      5880
     tccggacata ggataactgg cccggatatc acgatagacg gtcaaccaat tccgcttcgt      5940
     aagactgttc gtattcttgg agtaacagta gatcgggctc tctccttccg tcaacatttt      6000
     gatacagtca agtcagcgtg tcgatctagg ttgaacctga ttaaatccat ttcccgcccg      6060
     catcgatcaa acaatcgaaa aatccgcttc agagtcgccc atgccattgt cgacagtcgg      6120
     cttgtatacg gattggagct tactagcata gcgatagata gattggtcga agttctcagc      6180
     ccagtctata actcctacat cagaataatt tctggtctgc ttccatcaac accatcagat      6240
     tccgcttgcg ttgaagctgg gcttcttcca tttcgaatct ttattcgcgc ctccatctgc      6300
     tgcaaaacgg tagcattcct cagcaagaca gccggcgaag acagggtctt tctccttgat      6360
     gaggggaata gagccctaag cacggcagcc aacttgagtc tcccgccggt taccagggtt      6420
     cactggcttg gagacaggag ctggcgttcc gtcccaccaa aaatcgacaa taaaataaag      6480
     aacagttttt ctgccggcag caactctgct gctttgcgac gatcagtcgc agagctgcta      6540
     caaatttctt attctgattt tgctcttcgg tactcagatg gatcccttac aagcgccggt      6600
     gtcggcatag gggtggccgg tgacatcccg gacgtaagta tgagcctgcc atcacagtgt      6660
     tcagtatttt ccgccgaggc agcagcagcc tttatcgccg ctaccacccc ttcggaccgt      6720
     tcgatcttag tcctaaccga ctcagccagc gtaatatctg cgctacagtc agattcgcct      6780
     tcgcaccctt ggattcaagc aatattgaag tacgcactac ctgacacggt tttcacgtgg      6840
     atccctgggc actgcggagt tccagggaac gaaatggctg atcatcttgc caaatcgggc      6900
     ctttcaggtc aacggtatac ttcagaggtt cctttcatgg accttaaacg gtggatcaaa      6960
     tctatcttcc gtcaacattg ggaagattca tggtaccgca caagaacgct tttccttcgg      7020
     aagattaaaa acacaaccac tacttggtca gaccttccaa ttctcaagga ccaaaggata      7080
     ctatctcgct tacgaaccgg acacacccta atatcgcaca atatgggagg cggtcccttc      7140
     cacaaagaat gtgagtcttg tcatatccca gcctctgtgg accatgtcct ttgtgcctgc      7200
     cccatatacg aacatctgcg acaaatacat ggcctttctg acaacatcgg agaggtacta      7260
     cgcgacgatg caactactat tgctgcttta ctgagttttc tacacgatgc caacttgtac      7320
     agcagtatat gatcctgccc aatatgacga cgacattgat gccagcccac ggatacgaaa      7380
     ctgttttact aaattgtact atgtatagat gtaagcttga aatgttagat tgacagttat      7440
     ctctttttta tcggttcagt cttctgctga ccgtatttct cccgggtctc agccttctgc      7500
     tgaaccttct cccgtgttga actagcataa tgttaaaaaa cacgttaata aagatgaaaa      7560
     aaaaaaaaaa a                                                           7571
//
ID   I-59_AAe    repbase;    DNA;    INV; 5490 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-59_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5490
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1330-1330 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1002
FT                 /product="I-59_AAe_1p"
FT                 /translation="MEAKNKRIESLEVTLNGNIHPGNNGMIAELLQKVDHL
FT                 TSEMRKKDERIQILEAALQSGSRMEIVRKHGTIEDLVTKVNDLELQLKQKE
FT                 REVYTFQSLFQKRSQSHVQHSSNVAQQSTDNPAAHSQAQNQIDIAPTNSKK
FT                 NKNRKQKVKESQLTPMYESDTSPIPSEPTSVERTPKRDRAVTDSDESSGQP
FT                 KNKVYTPNCDLIPNVNISTSSGDDDMSDS"
FT   CDS           1071..5189
FT                 /product="I-59_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="MGPKPIESGQSTKKEETTGVSITSSTTSINDTTEEDD
FT                 VSKIPRPNATFFQAVPTSLLWEGPSTMPSPSEALLGSATSESGKNTIETKT
FT                 SQPRRSARIKARYLNETSKSNADAQLGHANSCSVADYDRVQALRYGPAAVP
FT                 IASSSSASAPPTFSRSFTNPGTSTAVIDTIKQTNFVLQWNINGFHNNISDL
FT                 ECLIHDNLPVVIALQEAHRTTVNRMNRMLRGRYKWIYKSNANVYHSVAIGV
FT                 LESVTFSLLQLDTDLPIVAVKLDYPFPVSIVSMYLPCGKIQDLKNRLLRAL
FT                 EPIQGAKLILGDVNGHHTTWGSARVNARGSILMELAEVMDLISLNDGSITF
FT                 TSGQRESTVDVSFASSSIVNRLLWSVGADPLGSDHHPISISINQRPPETSR
FT                 RPRWIYNQADWASLQAMIDESLGSSEPDNLSTFLSTIHQAAAASIPKTSPK
FT                 PGRKALPWWSPETKKAIKARRKALRLIKRLPDCHPDKDAAMALYRAKRNEC
FT                 RQIIRDAKNQCWESFLDSINSSQSSTELWSKVNSLSGKRKAHGIAIHQDGV
FT                 LTRDPSTIAQALGEYFASLSAFEKYSNTFKRRNDASSLEKMIIPEDKTHQP
FT                 INEPFRLIELELALAKCNGKSAGVDEIGYPILKHLPPVGKAALLRLLNKEW
FT                 TGNTLPKEWNHSLVIPIPKHGSVNKAPTDFRPISLTCCISKVMERMVNRRL
FT                 VHFLESNGHLDHRQHAFRSGHGTGTYFATLGQVLHDAKAQEQHVELATLDL
FT                 AKAYNRAWTPGVINQLSKWGLTGHVLHFLRNFLRNRTFQVCIGNHRSNTFS
FT                 EETGIPQGSVIAVTIFLIAMNGVFSSLPKEIFIFVYADDIMLVVIGSTEKA
FT                 LRRKLQASVNAVAKWGNEVGFELSAEKSAIMHLCTSRHRPIRSLVTANGQP
FT                 IPLKKSVRVLGIHLDRHLTFVEHFNEVKRNCQTRLNLLRTLSRRHNTSNRD
FT                 VRLRVAAAIIDSRLLYGIELSCTTTDAMVTSLAPVYHQSIRIASGLLPSTP
FT                 SDAVCAETGRLPFTYLITETVCKRAISFLEKTTPCTGGVLLLDEANRLLRG
FT                 HVNQVLPPVAEVHWNGARSWDSPRMNIETSIKNAFRAGDNSPALTRSVAEL
FT                 LRTKYPDYTHRYTDGSKAQDGVGIGVTDPEISRFLRLPDPCSVFSAEAAAI
FT                 LIASTMPSPKPVLILTDSASVLAALSSEVTRHPWIQAIQLKAHPGTVFAWI
FT                 PGHCGIRGNEEADRLAAHGRHSTFYTKEIPGQDLKRWITTTIRDSWALKWL
FT                 NTRNLFLRKIKYDVTRWVDPKNHLEQKIMSRLRTGHTKASHNMGGEGPFRR
FT                 ICPACNVLYSVEHFIINCPQHQAARTLHDIPDSIRCALNNDPDNITRLMNY
FT                 LKDIELYHNI"
XX
SQ   Sequence 5490 BP; 1635 A; 1490 C; 1142 G; 1222 T; 1 other;
     tgctgggggt ttggacatac cagtaagcgt tgccaacaat cacatgcaac ctgtggcact        60
     tgctcaaaag accacacgat tgataaggag aatccctgtc aagcggaggt atattgcaag       120
     cggtgcgaca gacataacca ctctctggcc agccgaaaat gccctgtcta cggcaatgaa       180
     aacgaaatcc aaaagattcg tgttaatcaa ggcatttcgt acccagcagc ccgaaggcta       240
     tttgaacaag ccaataacca gcacaccttc tccagcgtca cagtagctag caaggatcag       300
     caaatcgccg acctgtcttc taaagttgac aaactccttc aggaaatgga agcgaagaat       360
     aagcgaatcg aatctcttga agtaacccta aatggcaaca tccacccggg caacaacggc       420
     atgattgcgg agcttctgca aaaagtagat cacctgacca gtgaaatgag aaagaaggat       480
     gaaagaatac agatcctgga agcagccctg cagagcggtt cccgcatgga aattgtccgg       540
     aaacacggca caattgagga cctagtaact aaggtcaacg accttgaact ccaactgaaa       600
     cagaaagaaa gagaggtcta caccttccaa agtctcttcc aaaaacgctc ccaatcccac       660
     gtccaacact cctcaaacgt tgctcaacaa tctaccgaca accctgcagc tcattcgcaa       720
     gcccaaaacc agatcgatat agcgcctaca aactcgaaaa agaataagaa taggaaacag       780
     aaggtgaaag aatcccagtt gactcccatg tatgaaagcg acaccagccc aattccctca       840
     gagccaactt cggtagagcg aacccccaaa agagatcgtg cagtcacaga ctctgatgaa       900
     tcatccggcc agccaaaaaa taaggtctat actcctaact gtgacctcat tcccaacgtt       960
     aacatctcga cttcaagtgg agacgatgac atgtcagatt cctagaaatt catccagtac      1020
     tcctcgctaa agcactctac aacagggaaa ttacatgtgt tataccagtc atgggcccta      1080
     aacccataga aagtggtcag tccaccaaga aagaggagac tactggagtg tctatcacaa      1140
     gttcaaccac ttccatcaac gatacaacag aagaagacga tgtttccaaa atcccacgtc      1200
     caaatgccac cttttttcaa gcagttccaa catctttgct gtgggagggc ccatcaacga      1260
     tgccttcccc cagtgaggct ctgttgggat ctgcaaccag cgagtcggga aaaaacacca      1320
     tagaaaccaa gacttcccaa ccaagacgct ctgcacggat caaagcaaga tatctaaacg      1380
     agacttcgaa gagcaatgcg gatgctcagc taggtcatgc aaacagctgc agcgtggcag      1440
     attatgatcg cgtccaggct ctccggtacg gccctgctgc ggtacccatt gcatccagtt      1500
     cctctgcctc tgcaccacca actttctcta gatcgtttac caaccctggt acgtctacgg      1560
     ccgtcatcga tacgataaag caaaccaatt tcgtgctgca gtggaatata aacggatttc      1620
     acaacaacat aagtgaccta gaatgcctga tccacgacaa cctgcctgtc gtaatagcct      1680
     tacaagaagc tcatcgcacc actgtgaaca gaatgaatcg aatgttgaga ggaaggtaca      1740
     aatggatata caaaagcaat gcaaatgtat accattctgt agcgatcggg gtactagaat      1800
     cggtcacttt ctccctgtta caactagata ccgaccttcc cattgtcgct gtcaaactcg      1860
     attatccatt ccctgtatcg atagtcagta tgtatctgcc atgtggtaaa atacaggacc      1920
     tcaaaaaccg actactccgt gcactagaac ccatacaagg tgcaaaattg atccttggcg      1980
     acgttaacgg gcaccatacc acatggggaa gtgccagggt taatgctcga ggttccatct      2040
     tgatggaact tgcagaggta atggacttga tttcacttaa cgatgggtcc attactttca      2100
     ccagcggtca acgtgaatca accgtcgacg tatcctttgc tagctccagc atcgtcaaca      2160
     gattgctctg gagtgtcggt gcagaccccc ttggaagcga ccatcacccc atctcgatat      2220
     ctatcaacca acgacctcca gaaacatcgc gccgccctcg atggatttac aatcaagcag      2280
     actgggcatc cttacaagca atgatcgacg agtcactggg ttcatccgaa cccgacaacc      2340
     tttctacctt tctgagtacc atccaccagg cagccgctgc atctataccg aaaaccagtc      2400
     ccaaacctgg ccgtaaggct ctcccatggt ggtcaccaga aacgaaaaaa gcaataaaag      2460
     ccaggagaaa ggccctacga ttgataaagc gactccctga ttgtcaccca gacaaagatg      2520
     cggccatggc cctctacaga gcaaaacgga atgaatgccg acaaatcata cgtgacgcaa      2580
     aaaatcaatg ctgggaaagc ttcctggaca gtataaactc cagccaatcc tcgaccgagc      2640
     tatggagtaa agtaaattct cttagcggaa aacggaaggc tcatggtatc gccattcacc      2700
     aagacggcgt ccttaccagg gatccaagta caattgctca ggccctggga gaatatttcg      2760
     cctctctttc ggcatttgag aaatacagca acaccttcaa gcgacgaaac gatgctagca      2820
     gcctcgaaaa aatgatcatt ccagaagaca aaactcacca accaatcaac gaacccttcc      2880
     gtcttatcga actagaactg gccttagcca agtgtaacgg taaatctgcc ggagtcgatg      2940
     agataggtta cccaatattg aagcatctcc ctcccgttgg caaagcagcc ctgttacgac      3000
     tgctaaacaa ggaatggact ggaaacacct taccgaaaga gtggaatcat agcctcgtta      3060
     ttcctattcc taaacacggt tctgttaaca aagcacctac agattttcgt ccgatttcgc      3120
     taacatgctg catcagcaag gtgatggaaa gaatggttaa ccgccgcctg gttcactttc      3180
     ttgagtctaa tggtcatctc gaccaccgac agcacgcgtt tcgttccggt cacggaacgg      3240
     ggacatactt tgcaactctt ggacaagtac tccacgatgc taaagcacag gagcaacacg      3300
     ttgaactggc tacactagac ttggcgaaag cctacaatcg ggcctggaca ccaggcgtca      3360
     ttaaccagct ttccaaatgg ggtctgacag gacatgtcct tcacttcctg agaaattttc      3420
     tgcgtaacag aactttccaa gtttgcattg ggaatcaccg ctcaaatact ttttcagaag      3480
     agaccggcat accgcaaggc tcggttattg ccgtcactat cttcctaatt gccatgaacg      3540
     gggtcttcag tagtcttccg aaagagatct ttattttcgt ttatgcggac gacataatgc      3600
     ttgtggttat tgggtccacc gaaaaagcgc tccgccggaa actccaggca tcagtgaacg      3660
     ccgtcgccaa gtggggcaat gaagtaggat tcgagttatc agctgagaaa agtgccataa      3720
     tgcacctctg tacatcccgc catcgtccca ttcgttctct agtcactgcc aacggtcaac      3780
     caataccatt aaaaaaatcc gttcgagtac ttggtattca cttggacagg catctgacct      3840
     tcgtcgaaca cttcaatgaa gttaaacgga attgtcaaac tcgcctaaac cttcttcgta      3900
     cattatccag acgccataac accagcaacc gtgacgtccg ccttcgtgta gcagcagcaa      3960
     tcattgatag cagactactc tacggtatag aacttagctg tacaacaacc gacgcaatgg      4020
     tcacatcact cgctcctgtt tatcatcaat cgatacgaat cgcttccggt ctactgccat      4080
     ccacgccatc agacgctgtc tgtgcagaaa ccggtagatt gccgttcacg tatctcatca      4140
     cagagactgt atgcaaaaga gcaatcagtt tcctagagaa gacaacacct tgtaccggcg      4200
     gagtccttct ccttgatgag gcgaaccggc tcctgcgtgg acacgtcaac caagtgctcc      4260
     cccctgtggc cgaggtccac tggaatggag ccaggagttg ggactcgccc cgtatgaaca      4320
     ttgaaacatc gataaagaat gccttccggg cgggagacaa ctcccctgcg ttgactagat      4380
     ctgtcgccga gctacttcga acgaaatatc ccgactatac acatcggtat acagatggct      4440
     ccaaggccca ggacggagtt ggtatcggcg ttaccgaccc tgaaatcagc cgttttctcc      4500
     gccttccaga tccctgctca gtattttctg cagaagcagc agccatcctt atcgcctcta      4560
     caatgccgtc accgaagcca gtcctgatac tgacagactc agccagtgtt ctcgcagcgt      4620
     tatcatcgga agtgactcgc catccatgga tccaagcaat ccagcttaag gcgcatccgg      4680
     gtacagtatt tgcttggata cctggacact gcgggatccg tggcaacgaa gaggctgacc      4740
     gtttagcagc tcacggtaga cattcaactt tctacacaaa ggaaattcct ggccaagatt      4800
     tgaaacgttg gatcactacg accattaggg actcctgggc gcttaagtgg ctgaacacac      4860
     gwaacctctt cttacgaaaa attaaatatg atgttacacg atgggttgac cccaaaaacc      4920
     atctcgagca aaaaattatg tccagacttc gcacgggtca cacaaaggct tctcacaata      4980
     tgggaggtga gggacctttc cgaagaatct gtcccgcttg caatgtatta tactcggtgg      5040
     agcacttcat cattaattgt cctcaacatc aggctgctcg cacgctgcat gacattcctg      5100
     acagtatccg ctgtgctctc aacaacgacc ctgacaacat cacacgactt atgaattatt      5160
     taaaagacat cgaactatac cacaacatct agccatcctc cccgacagaa taattcaact      5220
     tgaccacgct tcgaaacttg acaacgaatt cgtttaatgg aaccacccta gaatacagcc      5280
     tggaacagat cacgcacccg cacctggact atccaacgga aatagctttt atattacgaa      5340
     tgattgtctt tccttaacca aaaatgttaa cttaacacat tactctgtat aagtattact      5400
     gcccaggagg gccaatgtaa cgccctcttt tttcacggag acgaaccagc cactggctga      5460
     aagtctcctt aataaagata aaaaaaaaaa                                       5490
//
ID   I-5B_AAe    repbase;    DNA;    INV; 5651 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_AAe;
KW   I-5B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5651
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1355-1355 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >96%
CC   identity. The consensus is ~79% identical to I-5_AAe, and
CC   ~76% identical to I-10_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           318..1625
FT                 /product="I-5B_AAe_1p"
FT                 /translation="METDGDEGGPKENSDCAESSSLTKPFRVKVYPSSFSG
FT                 PFVVYFRKKEKPINVLLISSEIYKKYKSVKEIKKISLDKLRIVFGSRDEAN
FT                 ALLESKLFFNSYRVYAPCDSCEINGIIYDESLNCDDIRNHGSGFFRNKSIS
FT                 PVEILDCVRLSKLFIDGNDTKYVHSNCIKITFSGSVLPDYVNVDNVIFRVR
FT                 LYYPKLMHCDRCLLFGHTSNFCSNKQKCSKCGEFHSSSTCKNQSNLCIYCK
FT                 QEHNSLKECAVYIENQSKFNQKIKNKNLLSYAEVMKSTDNIASANTFEILS
FT                 DDDGNVDHENFGNYVYKPPSKRKRINNKTSNNHNQIFEPQPSTSFDLHFPS
FT                 LNDTTSPKNIPGFRKIETDPTSNNKNQNSNNLSENKAKVDTDNSILNILEE
FT                 IVEFLGLSDFWKKIIKIFLPILASFLNKLNSFGPLLSSFFSS"
FT   CDS           1628..5317
FT                 /product="I-5B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAQIKNNDMNILQWNCRSIIPKIDSLKVLISSYNIDL
FT                 FCLNETWLVSSKFFHVSKFNVIRKDRDSSYGGVLIGIRENIEFKYLDLSIH
FT                 SQVEYIAISVKKEKCEFSVICFYIPPNTTFSLSQIRSILNEVPPPFYILGD
FT                 FNAHNFAWGSEKTDGRGSLIMELIDDLNLHILNDGSFTRIVVPPNHHSCID
FT                 LSLCSNSLSMKSSWKTIDDPNGSDHLPILIEIQNPVQDNFVHEFNAPDLCT
FT                 NVNWTKFSDLVSLSLINIVELLSPIENYNNFSKLLIDCLHKSQNKKNKSCS
FT                 IRKNRPSFWWDNECSIALKTKSDAFKLFRRSGSRNHFFLYRKAEAQFIRLT
FT                 KSKKRNYWKNFVQNLDRETSLSTLWSVARNLRNYDPTIPNVLEYSEKWIHE
FT                 FASKICPDFVPRSIKFKNSSLNYFPELCGSFSLAEFNLALSITKNTAPGID
FT                 NIKFIVLKNLPDDGKLHLLSIYNAFLTQNIIPYEWRLIKVISILKPGRDPS
FT                 SADSRRPISLLSCLRKLLERMILNRLELWAENNKIFSSSQFGFRRGRGTRD
FT                 CVSLLASQIQLSFNKKQDLVSTFLDVSGAYDSVLIDLLFEKMHNLKIPNMI
FT                 SNFLCNLFSFKIMNFFHNGDSKLLRYSYFGLPQGSCLSPFLYNLFTSDMAS
FT                 IIPNGCYLLQFADDNVISISGKNREVISHFMQCALNNIDSWAHENGFSFSV
FT                 QKTKYIIFSRKHSNISINLYLDGIEIEQVDEFKYLGIWFDSKLNWNIHIKQ
FT                 IQKTCSKRINFLRTITGTWWGANPSDLITLYKTTIRSVMEYGCFTFGSAAH
FT                 THFVKLEKIQFRCLRICLKLMNSTHTQSTEVLAGVVPLKIRFQELNCKFLI
FT                 NCLSNNHPIIDILKSLFEINPTSRILESYIICSTENVAPISYNSFYNFEIN
FT                 IHTYLPLIDFSLFHELQQIPNHLYSHFANILFMRKFDGITSAQFYFTDGSL
FT                 VQGIAGFGIYNEYVAHFFKLKSPCSIFIAELIALYFACNLIKDCPPNIYIV
FT                 CSDSLSCLRALGTISFNFKTHHVLFMLKKLLFDLHCQGFIIKFLWIPAHCR
FT                 IYGNEQADSLAKFGVVRGIIYDRDIFPSEYYPKLKTHSLDNWQTCWNSSNK
FT                 GRWCYSICPKVSNFPWFRNIPATRNFICSFSRLISNHYICNSHLYRINIVD
FT                 SNLCECGESYEDIDHIVLQCSRFILPRTTLFNTLMNYGHSIPVSIRDILGT
FT                 KCYQILKLLYSFLNEISYTI"
XX
SQ   Sequence 5651 BP; 1782 A; 857 C; 857 G; 2154 T; 1 other;
     catacccggt aagtaggcct tgaccaggtt agacggtttt tttcctcgct tgtcattttt        60
     tttccatttc agatccgaat tttccgaagc tttgaatttc aattttgacg atttgcttgg       120
     aggattttcc cagtgtgaat aattcaagag ctgcctatca agtatttgga attcaagttt       180
     tcggtcactt ttatcgtcat tggagtttcg ttcgttgcaa aaccttgagt ataattttac       240
     ctttattatt tatttctttt cctgttattg tagttctcat ttgacattgt tatttctatc       300
     tgtgtgaagt ttccattatg gaaactgacg gggatgaggg gggacctaaa gaaaattccg       360
     attgtgctga atcctcttct ttgaccaaac catttcgtgt aaaagtttac ccttctagtt       420
     tttctgggcc ttttgtcgta tattttcgaa aaaaggagaa acccattaat gttttgctga       480
     tttcctctga gatttataaa aagtataaat ctgtaaagga aattaaaaaa atttcattgg       540
     acaagttgag aattgttttt ggatcgcgag atgaagcaaa tgctctcttg gaatccaagt       600
     tattttttaa ttcctatcgc gtgtatgcac cttgtgattc atgcgaaatt aatggaataa       660
     tatatgatga atcattgaac tgtgatgaca ttagaaatca tggttcaggt ttttttagaa       720
     acaaatccat ttctcctgtc gagatactgg attgtgtccg tttatcaaaa ttatttattg       780
     atgggaatga taccaagtat gtacattcta attgtatcaa gattacgttt tctggatctg       840
     tactgccaga ctacgttaat gttgataatg ttatttttcg cgtgagactt tattatccaa       900
     agctcatgca ttgtgatcga tgccttcttt ttggtcacac ttcgaatttt tgctctaaca       960
     aacaaaaatg ttctaaatgt ggtgaatttc attcgtcatc cacttgcaag aatcaatcta      1020
     atttatgtat ttattgtaaa caggaacaca attctttaaa agaatgtgct gtttatatcg      1080
     aaaatcaatc aaaattcaac caaaaaataa aaaataaaaa tctcttgtcg tatgctgaag      1140
     taatgaaatc cactgataac attgcttctg caaatacttt tgaaattttg tcagatgatg      1200
     atggtaatgt agaccatgaa aattttggta attatgtgta caaacctcct agcaaaagga      1260
     aaagaataaa caataaaact tctaacaacc acaatcaaat atttgaacct caaccatcta      1320
     cttctttcga tttgcacttt ccatccttga atgatactac ttctcctaaa aatattccag      1380
     gatttcgtaa aatagagact gatcctacat ctaacaataa aaatcaaaat tcaaacaatt      1440
     tatcggaaaa caaagctaaa gtagatactg ataactcaat tttgaacatt ttagaagaaa      1500
     tagtagaatt tttaggattg agtgatttct ggaaaaaaat aattaaaata tttttaccta      1560
     ttttggcttc ctttttaaat aaattgaatt cttttggccc tcttttgtct tcatttttct      1620
     cttcgtaatg gctcaaataa aaaataatga tatgaatatt ttacaatgga attgtcgtag      1680
     tattattcca aaaattgata gtttaaaagt tttgataagc agttataata ttgatttgtt      1740
     ttgtttaaat gaaacttggt tagtgtcatc aaaattcttc catgtttcta aattcaatgt      1800
     tattcgaaaa gatagagatt cttcgtatgg aggagttctt attggaattc gtgaaaatat      1860
     agaatttaaa tatttagatt tgtcaataca ttcacaagtt gaatatattg ctatttctgt      1920
     taaaaaagaa aagtgtgagt tttcagttat ttgcttttat attcctccta ataccacttt      1980
     ttctttatcg caaattagaa gtatattgaa cgaagttcct cccccatttt atatattagg      2040
     tgatttcaat gcacataatt ttgcttgggg tagtgagaaa acggatggta gaggttcatt      2100
     gattatggaa ctaattgatg acttaaattt acatatcctc aatgatggat cttttactag      2160
     gattgttgta ccaccaaatc atcattcgtg tattgactta tctttatgct ctaatagctt      2220
     gtctatgaaa tcttcttgga aaactattga cgatcctaat ggtagtgatc atttaccaat      2280
     tttaattgaa attcaaaatc ctgtccaaga taattttgtc catgaattta atgctcctga      2340
     cctttgtaca aatgtaaatt ggacaaaatt ttctgatctg gtatctcttt cgttaattaa      2400
     tattgttgaa ttgttatctc caattgaaaa ttacaataat ttttcaaaat tattgattga      2460
     ttgtttgcat aaatctcaaa ataaaaaaaa taagtcatgt tctattagaa aaaatcgccc      2520
     ttctttttgg tgggataatg aatgttccat tgctttgaaa actaaatctg atgcttttaa      2580
     attatttcgt cgatcaggct ccagaaacca tttctttcta tatcgtaaag ctgaggcaca      2640
     attcataagg ctaactaaat ccaaaaagag aaattattgg aaaaattttg ttcaaaattt      2700
     agatagagaa acttctttat ctaccttgtg gtctgttgcc agaaatctaa gaaattatga      2760
     tcccaccatt cctaatgttt tagaatattc ggaaaaatgg atacatgagt ttgcttcaaa      2820
     aatttgtcct gattttgtcc cacgttccat taaatttaaa aatagttcac taaattattt      2880
     tcctgaactt tgtggttcat tttcattagc tgagtttaac ttagcattat caattactaa      2940
     aaatactgct ccaggtattg ataatattaa atttattgtg ttaaaaaatt taccggatga      3000
     tggaaaactc catttacttt caatatataa tgctttccta actcaaaata ttattcctta      3060
     tgaatggcgt ttaatcaaag ttatcagtat tctaaagcct ggtagagatc cgtcatcagc      3120
     tgatagtagg agacctatta gtttattatc ttgtttgcgt aaacttttgg aaagaatgat      3180
     tttgaatcgt cttgaattgt gggccgagaa taataaaatt ttttcatctt ctcaatttgg      3240
     atttaggaga ggtcgaggta ctcgcgattg tgtttcacta ttagcttcac aaattcaact      3300
     ttcattcaat aaaaaacagg acttagtttc cacttttctt gatgtttctg gagcctatga      3360
     ttctgttcta atcgatttat tgttcgaaaa gatgcataat ttaaaaattc ccaatatgat      3420
     ttctaatttc ttatgtaatt tattttcttt caaaattatg aacttttttc acaatggaga      3480
     ttcaaagtta ttaagatata gctattttgg acttccacaa ggttcatgtt taagtccatt      3540
     tttatacaat ttatttacca gtgatatggc atcaataatt ccaaatggtt gctatttgct      3600
     tcaatttgct gatgataatg ttatttctat cagtggcaaa aatagagaag tcattagtca      3660
     ttttatgcaa tgtgccttaa ataacattga ttcatgggct catgaaaacg gattttcatt      3720
     ttcagttcag aaaactaaat atatcatatt ttcgagaaaa cattcgaaca tatccattaa      3780
     tttgtatctt gatggaatcg aaatcgaaca agttgacgaa tttaaatatc ttggtatatg      3840
     gtttgactct aaattaaatt ggaacattca tattaaacaa attcaaaaaa catgttcgaa      3900
     acgaatcaat tttcttcgta ctattacagg tacttggtgg ggtgccaatc catctgactt      3960
     aattacgctt tacaaaacaa ctatccgttc agtcatggaa tatggttgtt tcacttttgg      4020
     aagtgctgca catacacatt ttgtcaaact tgaaaaaata caatttcgtt gtttgagaat      4080
     ttgtttgaaa cttatgaatt caactcatac tcaatcaaca gaagtactcg ccggtgttgt      4140
     accacttaaa attcgttttc aagaactgaa ttgtaaattt ttgattaatt gtctctcgaa      4200
     taatcatcca attattgata ttttgaagtc actattcgaa attaacccaa cgagcagaat      4260
     attggaatct tacattattt gttcaactga aaatgttgca ccaatttcat ataatagttt      4320
     ttataatttt gaaattaata ttcacactta tctacctttg attgatttct ctctattcca      4380
     tgaattgcaa caaattccaa atcatctata ctctcatttt gccaatattc tatttatgcg      4440
     taaatttgat ggaatcactt ctgcacaatt ttatttcaca gatggatcct tagttcaagg      4500
     catcgctgga tttggaatat acaatgagta tgtggctcat tttttcaaat taaaatctcc      4560
     atgttccata ttcattgcag aattaattgc tttatatttt gcttgtaact tgataaagga      4620
     ctgcccacca aatatttaca ttgtatgttc tgatagctta agttgccttc gtgctttggg      4680
     taccatatct ttcaatttta aaactcatca tgttttattc atgttgaaaa agttattatt      4740
     tgatttacat tgtcaaggat ttataattaa atttttgtgg atccctgctc attgtagaat      4800
     atatggtaat gaacaggctg attcattggc taaatttggt gttgttcggg gtataattta      4860
     cgatcgtgat atttttcctt ctgaatatta tcctaaattg aaaacacatt cccttgataa      4920
     ttggcaaact tgttggaatt ccagtaataa agggagatgg tgttattcaa tttgtccaaa      4980
     agtcagtaat tttccttggt ttaggaatat accagcaact agaaatttta tttgttcatt      5040
     ttcacgactc atttcaaatc attatatttg taatagtcat ttatatcgta tcaatattgt      5100
     ggattctaat ttatgtgaat gtggtgaatc ttatgaagac attgatcata ttgtccttca      5160
     atgttcaagg tttattttac caaggactac attatttaac actttaatga attacggaca      5220
     ttcaatacca gtatctattc gggatatatt gggtacgaaa tgttatcaaa tacttaaact      5280
     tttatatagt tttttgaatg agatttcata tactatttga tatttctgct kgtgtgtgtg      5340
     tttttttttt cttgttttta tttgcagata tgaagatgga ctcttttttg gtagaccccc      5400
     tccctcatcc cgttttggaa gccaccccat accccattac ttcacttgga tccatgttgc      5460
     agtttatggc tctgctatgg ttaattttta ccgtatgagc ctttagtttt aatttttctg      5520
     ttataacgtt atatgaaaag ataaagaggt tttgtgcctc tttgagaaag atttcgaaca      5580
     gatatcactc aaaggggttt ttccctcttt caaaattttg gttaaataaa taaataaata      5640
     aataaataaa t                                                           5651
//
ID   I-5_AAe     repbase;    DNA;    INV; 5827 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5827
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1356-1356 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           523..1827
FT                 /product="I-5_AAe_1p"
FT                 /translation="METDDGEGSKENVLSNDSSSSNKSFRVKVYPSSFPGP
FT                 FVVYFRKKEKPINVLLISSEIYKLYTSVKEIKKISLDKLRVIFGSRDDANA
FT                 LLESKLFFDSYRVYAPSNACEINGIIYDESLDCEDIKIHGSGVFKNKSISP
FT                 VKVLDCVRLSKLFFAGNDSKYMHSNCIKITFSGSVLPDYVMIDNVKFRVRL
FT                 YYPKLMHCDKCLLFGHTSKFCSNKQKCSKCGEPHQSSECNKISDLCFYCKQ
FT                 KHNSLKECVVYIDHQSKFNQKIRNKNILSYAEITKSTDSFSSPNSFDILHD
FT                 DVGNEPSQNLNNYVYKPPSKRKRISNKSLNNQNLFFEPQPSTSFDTNFPPL
FT                 GASVPSNNIPGFQRVDSTHSTNKNDQNSNNISSDKSNESSNQSILNILEEI
FT                 VDFLGLSDFWKKIIKLILPLLASLLDKLNSFVPLISSLFSS"
FT   CDS           1830..5519
FT                 /product="I-5_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASINSKKLHILQWNCRSIIPKIDRLKVLLSNFDIDV
FT                 FCLNETWLGTARFFRIPNYNIIRKDRDTSFGGVLIGIRDNIEFKYLNVSFQ
FT                 TQIEYVAVTIRNGKNEFSIICFYIPPNASFSLSEIKSILNEIPSPFYILGD
FT                 FNAHNFAWGSEKTDGRGSLIMDLIDDLNLNILNDGSITRIAVPPNNHSCVD
FT                 LSLCSNNLSMQSSWRTIHDPNGSDHLPILIDMQTSEDNEVFYEASTPDLCK
FT                 NVNWSKFSDLVSISLINIVNSDTPIDSYNTFSKLLIDCLQKSQHNKPSSKT
FT                 TKKNRPSFWWDNECSISLRNKSEAFKLFRRSGSRNDYFLYCKAEAQFTRLT
FT                 KFKKRNYWKNFVENLDRETSLSTLWSVARNLRNYNSSPPTILEYSEKWMDD
FT                 FSSKICPDFVPPSIDYKTNSINYFPELCNPFSIAEFDMALSITKNTAPGID
FT                 NIKFIVLNNLPYEGKLHLLSIYNALFCQNIIPFEWRFIKVINIVKPGRDPA
FT                 XADSRRPISLLSCLRKLLERMILNRLXLWAEDNNIFSSSQFGFRRGRGTRD
FT                 CIALLASQIQLSFNKKQDVVSTFLDVSGAYDSVLIDLLYNKMHNLKIPNLI
FT                 SNFVCNLFSFKIMNFYHNGKSKIIRYSYFGLPQGSCLSPFLYNLFTSDIAS
FT                 IIPNGCYLLQFADDNVISISGKNREIIRHFMQCALNNIGMWAHENGFSFSV
FT                 QKTKYIIFSRKYSTSLINLYLNGIEIEQVDEYKYLGIWFDFKLNWNAHIKY
FT                 IQKVCSKRINFLRAITGTWWGANPSDLITLYKTTIRSVMEYGCFTFGSAAR
FT                 TYFAKLEKIQFRCLRICLKLMNSTHTQSIEVLAGILPLKIRFQELNCKFVM
FT                 NCFSNNHPLIDFLKSLFDINPTSKMLDSFVHCSTENIEPIPSYAFHNSKTS
FT                 IHSYKPLIDLSLFHEMKQIPKFHHSHFANILFERKFNGITPAQFFYTDGSL
FT                 IEGIAGFGVYNLFSGHFFKLQSPCSVFSAELIALYFACNLIKDCAPNIYIV
FT                 CSDSLSCLQALNTINFNFKTHHIILIMKKILLELSSRGFIIKFVWIPAHCK
FT                 IYGNEQADTLAKFGVHRGITYSRIILPSEFYPKLKVKSLLDWQTCWNSSDK
FT                 GRWCHSICPKVNRFPWFKNMPASRNLICSFSRLMSNHYNCNSHLYRINIKD
FT                 SNLCDCGEFYEDIDHIVFQCDKFITPRNKLINNIVDLGQPIPVSVRDILGT
FT                 KWYPVMKLLFQFLNEISYLV"
XX
SQ   Sequence 5827 BP; 1806 A; 902 C; 950 G; 2161 T; 8 other;
     cattgttgta gcaggccttg aacgggcagg acgttgattt ttccaacgac tgacattttt        60
     ttctcttttc taggtgagaa aattttcaag acctacggag ttacggatcc ggtgtgttgc       120
     ggaagaagaa caagattgcc tgwgcggtgc gtttagaatc tccgtggtcg cggtagcggt       180
     cgattccctg tgtggcgcgg tagtagaaga ttccctgtgt ggcgcggtag gagtacttat       240
     tcgagggcgt taaccatttg tgtggcctct gaaaggacgt cggagaacat aattcctgtg       300
     tggtgcggaa gtagtaagga tttcctgtgt ggcgcggaag gagtatattg tcaagaggac       360
     gttattcgcc ttggattttt gaaaattgaa gccaccttgg tattggttgc agtttggttc       420
     agctgaagtt tgttaagtat ttgtttttat tttattttta twtttttcta ttcttttaag       480
     tattacataa tacttctaat tactaattgt tgagtttcca tcatggaaac tgatgatgga       540
     gaggggtcaa aagaaaacgt tctttctaat gattcctctt catcgaataa atcctttcga       600
     gtaaaagttt atccgtctag ttttcctgga ccttttgtag tttactttcg taagaaagag       660
     aaacctatca atgttttatt gatctcttct gagatatata aattatacac gtccgttaaa       720
     gaaattaaaa aaatttctct ggacaaattg cgtgtaattt ttggatcaag agatgatgct       780
     aacgctcttc ttgaatccaa attatttttt gattcctatc gcgtttatgc tccttctaat       840
     gcatgcgaaa ttaatggaat tatatacgat gaatctttgg attgtgaaga tatcaaaatt       900
     catggttcag gcgtttttaa gaacaaatcc atttctcctg ttaaggtttt ggattgtgtt       960
     cgtttatcga aattattctt tgctggtaat gattcaaaat acatgcattc aaattgtata      1020
     aaaataacgt tttccggttc agttcttccg gattacgtta tgattgataa tgtaaaattt      1080
     cgcgtgagac tttattatcc aaagctcatg cattgtgata aatgtcttct tttcggacac      1140
     acttcaaagt tttgttcaaa caaacagaag tgttctaaat gtggagaacc tcatcagtca      1200
     tccgagtgta ataaaatctc ggatctatgt ttttattgta aacaaaagca caattctttg      1260
     aaagaatgtg ttgtttacat tgaccatcaa tccaaattca atcaaaaaat taggaataaa      1320
     aatatattgt cctacgctga aataacaaaa tccactgata gtttttcatc tcccaattca      1380
     tttgatattt tgcatgatga tgttgggaat gaaccatcac aaaatttgaa taattatgtt      1440
     tataaacctc ctagtaagag gaaaagaatt tctaataaat ctttaaataa ccaaaatttg      1500
     ttttttgaac ctcaaccatc tacttctttt gatacgaatt tccctcccct tggtgcatcc      1560
     gttccctcca ataatattcc tggatttcaa agagttgatt ctacccattc aactaacaaa      1620
     aatgatcaaa attcgaacaa tatttccagt gacaaaagca atgaaagctc taatcaatca      1680
     attttgaata ttttggaaga aattgtagat ttcttgggat tgagtgattt ttggaaaaaa      1740
     ataatcaaat tgattttacc attattggcc tcccttttag ataaattgaa ttcatttgtt      1800
     ccccttattt cttctctatt ttcgtcctaa tggcttcgat caattccaag aaattacaca      1860
     ttttacaatg gaattgtcga agtattattc caaaaattga tagattaaaa gttttattga      1920
     gtaatttcga tatagatgtg ttttgtttga atgaaacgtg gttaggtaca gctagatttt      1980
     tccgtatccc taattataat attattcgaa aagatagaga tacatcattt ggcggagttt      2040
     taattggaat tcgcgacaat attgaattta aatacttaaa tgtatccttc caaacgcaaa      2100
     tagagtatgt ggctgttacg attagaaatg gaaaaaatga gttttcaatt atatgttttt      2160
     acatccctcc aaatgcaagt tttagtttgt cagaaattaa aagtatctta aatgaaatcc      2220
     catcaccatt ttatatacta ggagatttca atgcgcataa tttcgcctgg ggtagtgaaa      2280
     aaactgatgg tagaggttca ttaattatgg atttgattga tgatttgaat ttaaatattc      2340
     ttaatgatgg atcgattact aggattgctg tgcctcctaa taatcattcc tgtgttgatt      2400
     tatctttatg ttcaaataat ttatcaatgc aatcatcttg gagaactatt catgatccaa      2460
     atggtagtga tcatttacca attttgattg atatgcaaac ttctgaagac aatgaagtgt      2520
     tttatgaagc ttctactccc gatctttgta aaaatgttaa ttggagtaaa ttttctgatc      2580
     ttgtttccat ttcattaatc aatattgtca attcagatac tccaattgat agttacaata      2640
     ctttttcaaa attgttaata gattgcttgc aaaaatctca acataataaa ccatcttcaa      2700
     aaactacaaa aaaaaatcgt ccttcgttct ggtgggataa tgagtgttcc atttctttaa      2760
     gaaacaaatc tgaagccttc aaactatttc gcagatcagg ctccagaaat gattactttc      2820
     tatattgcaa agctgaagca cagtttacca gacttactaa atttaaaaag agaaattatt      2880
     ggaaaaattt tgttgaaaat ttggacagag agacttcatt gtcaactttg tggtccgtag      2940
     cacgtaattt gagaaattac aactcttctc cacctactat tttagaatat tcagaaaaat      3000
     ggatggatga tttttcttcg aaaatttgtc ctgattttgt tcctccgtcc attgattaca      3060
     aaactaattc aatcaattac tttcctgaac tctgtaatcc attttcaata gctgaatttg      3120
     acatggcttt atcaataacc aaaaatactg ctccaggtat tgacaacatt aaatttattg      3180
     twcttaataa tctaccttat gaaggaaaac ttcatttact ttcgatatat aatgctttat      3240
     tttgtcaaaa tattattcct tttgaatggc gtttcatcaa agttataaat attgtcaaac      3300
     ctggtagaga tccagcatkc gctgatagta gaagacccat tagtttattg tcatgtttgc      3360
     ggaaattatt agaacgtatg attttgaatc gccttgamtt atgggctgag gacaataaca      3420
     ttttttcatc ttctcaattt ggatttagaa gaggtcgagg tactcgtgat tgtattgcmc      3480
     ttttagcttc acaaattcag ctttcattca ataaaaagca ggatgttgtg tcaacattcc      3540
     tggatgtttc tggagcttat gattctgttt taattgattt attatacaat aaaatgcata      3600
     atttgaaaat tccaaattta atttcaaatt ttgtatgcaa tttattttct ttcaaaatca      3660
     tgaattttta tcataatgga aaatcgaaaa taattcgtta tagttatttc ggtctaccac      3720
     agggatcttg tttaagccct ttcttgtata atttattcac aagtgacatt gcttcgatta      3780
     ttcctaatgg atgttattta ttacaatttg ctgatgataa cgtcatttct atcagtggca      3840
     aaaatagaga aattataaga cattttatgc aatgtgccct gaacaatatt ggtatgtggg      3900
     ctcatgaaaa tggtttttct ttttctgttc aaaaaacaaa atatataata ttttcgagaa      3960
     aatattcgac ttctttgatt aatttatatt taaatggtat tgaaattgaa caagttgatg      4020
     aatataaata tcttggtata tggtttgatt ttaaactgaa ctggaatgct catattaaat      4080
     atattcagaa agtttgttca aaaagaataa actttcttcg tgcaattaca gggacttggt      4140
     ggggcgcaaa tccttctgat ttaattacac tttacaaaac tactattcgt tcagtaatgg      4200
     aatatggttg tttcacattt gggagcgctg cacgtacata ttttgccaaa cttgaaaaaa      4260
     tacagtttcg ttgcttgaga atttgtttga aacttatgaa ttcaacacat actcaatcaa      4320
     tagaagttct tgctggcata ttaccactga aaattcgttt tcaagaattg aattgcaaat      4380
     ttgtgatgaa ttgtttttca aacaatcatc ctcttattga ttttttgaaa tctttatttg      4440
     atattaatcc tacgagcaaa atgttagatt ccttcgttca ttgctctaca gaaaatattg      4500
     aaccaatccc ttcgtatgcc tttcataatt caaaaacttc cattcattca tacaaaccat      4560
     taattgacct gtctctattc catgaaatga aacaaattcc aaaatttcac cattctcatt      4620
     ttgctaacat tttgttcgag cgcaaattca atggaattac tcccgcacaa tttttttata      4680
     ctgatggttc attgattgaa ggaatcgcag gttttggtgt ctataattta ttttctggtc      4740
     atttttttaa attgcaatct ccttgttctg ttttctcagc agaattaatt gctctttact      4800
     ttgcgtgcaa tttaattaaa gattgtgcac caaatattta tattgtttgt tcggatagtt      4860
     tgagttgtct ccaggctttg aatacaatta atttcaactt caaaactcat catattatat      4920
     taattatgaa aaaaatattg cttgaactca gttctcgagg atttatcatc aaatttgttt      4980
     ggattcctgc tcattgtaaa atttatggta acgaacaggc agatacgtta gctaaatttg      5040
     gtgttcatcg cggaataact tacagccgta tcatactacc ttctgaattt tatccaaaat      5100
     tgaaagttaa atctcttttg gattggcaaa cgtgttggaa ttcaagtgac aaaggacgtt      5160
     ggtgtcattc tatttgtcct aaggtcaatc gttttccatg gtttaaaaat atgccagcaa      5220
     gtagaaattt gatttgctct ttttcgagat tgatgtcaaa tcattataat tgtaacagcc      5280
     atttgtatcg catcaacata aaagattcca atttatgtga ttgtggggaa ttttatgaag      5340
     acatcgatca tattgtattt cagtgtgaca aattcattac tcctagaaat aaattaatca      5400
     acaatatagt agatttgggt caacctattc ctgtatctgt acgtgatata cttggtacaa      5460
     aatggtatcc tgtaatgaaa cttttatttc agtttttgaa tgagatctca tatttggttt      5520
     gatactcttt gttttttttt tacttttatt ttcagatgtc acgttggatt cgattttgac      5580
     tctctccctc actggcttcc gatgacmctc ctaacttaac gccgatkgtt atgtttcaag      5640
     attacggctc tgttatggtt tgttaccgtg tgagccttta gttttaagtt tgatttgtaa      5700
     cgtttattga aaagataaag aggttttgtg cctctttgag aaagatttcc aattgaaatc      5760
     actcaaaggg gtttttccct ctttcaaaat tttagttaaa aataaataat aataataata      5820
     ataataa                                                                5827
//
ID   I-5_BTa     repbase;    DNA;    INV; 4731 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4731
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 698-698 (2018).
XX
DR   [1] (Consensus)
XX
CC   5'-end is indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..957
FT                 /product="I-5_BTa_1p"
FT                 /translation="IEKKERIPIPMITATFIGSNVPEYVMFDYYKAEVRLY
FT                 IKPVTQCNNCLKYGHFSKFCRGRKACRQCGSNFHPGPCKLETNPICINCKQ
FT                 THLPTDPNCPERKTQRKINGIIAEKNISAQEARKMANSYSDDYKFGEKKRF
FT                 GNFPLIPSAHTTSTNTKTNNKFTILEINHIPPQSKTMNNEPKTPKKESALK
FT                 SRLKNASKRKSTNPTKRKTDEFPTAWVNKLKQQDKLNEIMKAATVNNISTS
FT                 ENDNSGSTLKHVAAFQDIETEESMDTSIQDELIPTSSPANKSNTTLNISST
FT                 TDKQVNSLMLHNTDKNILDKDDNIMQP"
FT   CDS           957..4631
FT                 /product="I-5_BTa_2p"
FT                 /translation="MNSTSIIHWNIRSINANNIDLRNLTRQYTPNIILLNE
FT                 TWLKPTYNFKLKNYTIQRSDRSDGCGGIVSAFNQQINTKLLHNLSYTSIDL
FT                 TDLQIQTSTISMELRGKKEVIYMINCYAPPKYKGKFETLNNILEELTDKKI
FT                 ILTGDFNAQHLTWGYPASNTKGKDLSEVITNNNLILLNTQHLVSTRKVPIE
FT                 QEPSITDLAFSSSDIAPDISFEVLNSFPSGSDHHPLKIDLNSSNVSIISND
FT                 SHTKRTYINWNKFSSIASREFTEDFDAESATIEEWEDKIVKTIEESSSNIR
FT                 SKTTAPHHQMIKHEIWWNRECQKAANRRSIALQEFKKNGTISNLMNYNKEA
FT                 ANFKRITKQQKREHWRKFCSELDYKTSSKKVWDRIRIMKNSKTQTKPTNSE
FT                 WCPEFLNKLTPDTVQNKPPEMEQSEWDPKIQYKTFKSLLHNVKKRSPGKDG
FT                 INKKILSSLPESARKYLFHSFRNLLKTGKTPESWNEVIIKPILKPNKAEGD
FT                 INSYRPISLLSVVRKLFESILKPILEQEIKKHNILSPAQFGFRKFKSLFDN
FT                 HQKLNEKISKTFAKNDYLACLFLDIQGAYDSVNIDKLCSMMKDLKVNNRII
FT                 ELIHSLYNKKNIYVNFGGVTYGPRISHSGLTQGAVLSPLLFLIYTSQLHKR
FT                 INSCKILEFADDIVIMKRSKYLHEARRQIQTDIDALTNELDELSLTVSEAK
FT                 SKVMIFTRRRKIEYTPILIYGEPIDLVTEFKYLGLIYDRKWTWLPHIKYLK
FT                 DKVNANTNLIRMVSGIKWGCHQSSTKNLFKSLIQSILDFGVQFWFNDRTEK
FT                 VLNVITNKAVRTSFGFLKSSPNNAIYVESGIPPPIQRAQQVTDKYILKISN
FT                 ISSTTKADSLNKILEDLHRNNYNHKYPSLLTKRATDLFQLRQGVAASEEVR
FT                 FDKFQYPVPEISILFPITRKGDPSNKAIFAQFVEENKDSVFFYSDGSKTEE
FT                 RTTAAVVSPDININRTYILNHSRTIMSAEIKGIKESQTLISLYNVRKAIIC
FT                 SDSLSAISLLATKTTITDNLELEEIHHFMSKNKDIKIVWTPGHENIIGNEL
FT                 ADKQTKILTNATDWSNEKIHYSNYLKQAKSSTLREWQESWTESSKIKGARL
FT                 GEIQPLVSDRAWFENITISKKSTNIISRMRIGHGLYPQYLHRIKLKDNDLC
FT                 TCGQVGTIDHILLQCPSLNHQPTLIFKILKKDNPQINIDSKFILNKTNLEL
FT                 YQALESHILNNQILC"
XX
SQ   Sequence 4731 BP; 1894 A; 1058 C; 764 G; 1015 T; 0 other;
     atagaaaaga aggaaagaat cccaatccct atgataacag ctacgttcat aggtagtaat        60
     gtcccggaat acgtaatgtt cgattactac aaagccgaag tcagactata cataaaaccg       120
     gtaactcaat gcaacaactg cctgaaatac ggccacttca gtaaattctg cagaggaaga       180
     aaggcatgta gacaatgcgg atccaatttc cacccgggac catgcaaatt agaaacaaat       240
     ccaatatgca taaactgtaa acagacccac ttaccaacgg atcccaactg cccggaaaga       300
     aagactcaaa gaaagataaa cggcataatt gcggagaaaa acatcagtgc ccaagaagct       360
     aggaaaatgg caaactccta cagtgacgac tataaattcg gggaaaagaa aagatttggc       420
     aacttcccgt taattcccag tgcccatacg acatcgacaa acaccaaaac taataacaag       480
     ttcactatcc ttgaaatcaa ccatatccct ccacaaagta aaacaatgaa taatgaacca       540
     aaaacaccta aaaaagaatc agcattaaaa tctagactta aaaacgcctc taaaaggaaa       600
     agtactaatc caacaaaaag aaaaactgac gaattcccaa cagcttgggt gaacaaatta       660
     aaacaacaag acaaattaaa cgagataatg aaagcggcaa cagttaataa catatcaaca       720
     tccgaaaatg ataactctgg aagcaccctg aagcatgtgg ccgccttcca ggacatcgaa       780
     accgaagaat cgatggacac aagtatacaa gacgaactca tccctaccag ctcaccagca       840
     aacaagtcaa atacaactct taatatcagc tctactaccg ataaacaagt taactcttta       900
     atgttgcata atacagataa aaacatcctt gataaggatg ataatatcat gcaaccatga       960
     actcaacaag cataatccac tggaatatcc gcagcatcaa cgctaacaac attgatctgc      1020
     ggaacctgac aagacagtac actccaaata taatattatt aaacgagaca tggctaaagc      1080
     caacgtataa cttcaagtta aagaattaca caattcaaag aagtgacaga agtgacggtt      1140
     gcggaggaat agtatctgcc ttcaaccaac agataaacac caaacttctg cacaacttat      1200
     cgtacactag tattgaccta acagaccttc aaatccaaac atccacaatt agtatggaac      1260
     tgagaggaaa gaaggaggta atttacatga taaattgcta cgcaccgccc aaatacaaag      1320
     gtaaattcga aacattaaac aatattctag aagaactaac agacaagaaa ataatcctga      1380
     ctggcgactt taatgcacaa catttaactt ggggataccc tgcttccaac actaaaggga      1440
     aagacttatc cgaggttata acaaacaata acctaatcct attaaatacc caacatctgg      1500
     tctctacgag gaaggtcccc atagaacaag aaccgagcat aaccgacctg gccttttcaa      1560
     gtagcgatat tgctcctgac atctcctttg aagtgcttaa tagcttccct tcgggtagtg      1620
     accatcaccc actgaaaata gacctcaact caagcaacgt atctataatc tctaacgata      1680
     gccacaccaa gcgtacctat ataaactgga acaaattcag ctctatagcc tcacgcgagt      1740
     tcacagaaga cttcgatgca gaatcagcaa ctattgaaga atgggaagac aaaatagtca      1800
     aaacaattga agaatcaagc tccaatatca gatcaaagac tacggctcca caccaccaaa      1860
     tgataaagca cgaaatctgg tggaacagag agtgtcagaa agcagctaat agaagatcaa      1920
     tcgcccttca agagttcaaa aagaatggaa ccatatctaa cttaatgaac tacaataaag      1980
     aagcagccaa ctttaaaaga attacaaagc aacaaaaaag agaacactgg agaaaattct      2040
     gcagcgaact ggactacaaa acctcgtcca aaaaagtttg ggatcgaatc agaattatga      2100
     aaaacagcaa aacccaaacc aaaccaacca attcagaatg gtgccctgag ttcctaaaca      2160
     aactaacacc tgacacagtt cagaacaaac ctccagaaat ggaacaaagt gaatgggacc      2220
     ccaaaatcca atacaaaacc ttcaaatccc tcctacataa tgtcaagaaa agaagcccag      2280
     gtaaagacgg aatcaataag aaaatcctca gcagcctccc ggaatcagca aggaaatacc      2340
     tattccattc cttcaggaac ctcctgaaaa caggaaaaac accagaatcc tggaacgagg      2400
     ttataatcaa accaatactg aaaccaaata aagcagaagg tgatataaac tcatacaggc      2460
     ctataagtct cctctcggta gtcagaaaac tattcgagag catactaaaa ccgattctgg      2520
     aacaagagat aaaaaagcat aatatcttat caccagccca gttcgggttc cgaaagttta      2580
     aatcattatt cgacaatcat caaaaactta acgaaaaaat ctctaagacc tttgctaaaa      2640
     atgactattt agcatgcctc tttcttgaca tacaaggagc ctatgatagc gttaacattg      2700
     acaaactttg cagtatgatg aaggacctca aagtcaataa cagaataata gaactcatac      2760
     acagcctcta caataagaaa aatatctacg taaactttgg aggtgtaact tatggcccta      2820
     gaatctccca ctcaggactc acccagggag ctgttctaag cccactattg ttcctaatat      2880
     atactagcca actacacaag agaataaaca gctgtaaaat actggaattt gcggatgata      2940
     tagtaataat gaagaggagt aaatacttac atgaagctcg tcgacaaatt caaaccgaca      3000
     tagacgccct gaccaacgaa ctcgatgaat tatctctaac ggtctcagaa gctaaatcca      3060
     aagttatgat atttacaaga cgtagaaaaa tagaatacac cccgatccta atctacgggg      3120
     aacccataga cttagttacc gaattcaagt accttggact catttatgat cgaaaatgga      3180
     cctggctccc ccacataaaa tacctcaaag acaaagtaaa cgctaataca aatctcataa      3240
     gaatggtgtc aggaataaag tggggctgcc atcaaagctc aactaaaaac ctgttcaaat      3300
     cactaatcca atcgatctta gattttggag tacaattttg gtttaacgat agaacagaaa      3360
     aagttctaaa cgtaattaca aataaagctg tgagaacttc atttggattc cttaaatcat      3420
     cacccaataa cgcaatatac gttgaatcag gaatccctcc tccgattcaa agagcccagc      3480
     aagtgacaga caaatacata cttaaaatca gcaacatctc ttcgactaca aaggctgatt      3540
     ccctcaataa aatcctcgaa gacttacata gaaacaacta taaccataaa tacccatccc      3600
     tactaactaa gagagctaca gatctctttc aactaaggca aggagtagca gcatcagaag      3660
     aagtaagatt tgacaagttc caatatccag taccagaaat ttcaatcctg tttccaatca      3720
     cgaggaaagg agatccttct aacaaagcca tatttgccca gtttgtagaa gagaataaag      3780
     acagtgtgtt cttctactca gatggtagta aaactgagga acgaacaaca gcagcggtag      3840
     taagcccgga cataaatatc aaccgaacat acatcctaaa ccacagcaga accataatga      3900
     gtgcagaaat taaaggaata aaggaaagtc aaaccttaat ttcactctac aacgtcagga      3960
     aagctataat ttgctctgac tcacttagcg caatatctct gcttgcaaca aagaccacaa      4020
     taaccgataa cctagagcta gaagaaattc accattttat gtccaaaaac aaagacataa      4080
     aaatagtgtg gactcccgga catgaaaata taataggaaa cgaactagca gataagcaaa      4140
     caaagatctt aactaatgcc acagactggt ccaacgaaaa aattcactac tccaactatt      4200
     taaaacaagc aaaatcatct acccttcgag aatggcaaga atcctggact gaaagctcga      4260
     agataaaagg agctagactc ggagagatac aaccactggt ctcagacaga gcatggtttg      4320
     aaaacataac aataagcaag aaatcaacca acattatttc caggatgcgt attggacatg      4380
     ggttatatcc tcagtacctc catagaatca aactcaaaga taacgatttg tgtacttgcg      4440
     gccaagtggg tacaatcgat cacatactcc tacagtgtcc gtccttaaac caccaaccaa      4500
     ccttaatctt caaaatccta aagaaagata acccgcaaat caacatcgac tcaaaattta      4560
     tcctgaacaa aactaatctg gaactctacc aagctttgga atcgcacatt ttaaacaacc      4620
     aaattttgtg ttaataaagt gttaatctca gtgcagtggc tgtttgttga aaaactaagg      4680
     ccaaagactc taaagagggc gcgataagct cctaaaaaaa aaaaaaaaaa a               4731
//
ID   I-5_CQ      repbase;    DNA;    INV; 5023 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   An I non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5023
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 111-111 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >90%
CC   identity. It is phylogenetically close to Loner elements in
CC   Anopheles gambiae.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1269
FT                 /product="I-5_CQ_1p"
FT                 /translation="MTTTEATTRRVRQYPDEATGPFLVIAEATGEDNLRPT
FT                 NLSKTIIGMYQQDYVRAVVLSRRRMKILMRTGQAANDLVATRTIKNVQFSI
FT                 PQRLVEVLGVAHIELEVDEDDLANATTFDKGKMMQLHNPKIVETRRMRKRV
FT                 DGVDKMLTTVVVTFEGQKLPTHLIINQVLYPVKEYVYHTRQCRKCWRMGHG
FT                 EKNCRGKARCKKCAQEITTTIAEHACEVAVPVCINCKGNHEADDTKACPKA
FT                 IKRKEDDQKRKEAHSQGKTDWFSTAGLAEETSGSQPVSTLTEETIPAPSTS
FT                 GAQSKPAKRKCLDDNTDDSSEEEEIPRLTVHIEEGIRNAIQQAINSDEATL
FT                 AISGVLGAPPSEIPDDRLEDALKARLFDILAQRTDDYIGTLRL"
FT   CDS           1276..4938
FT                 /product="I-5_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="TTKGTPAQAFPLQFLQWNCRGALSKKASIINLINSTH
FT                 SSILCICESHLDSAANFDIPGFHLFRKDHQSNSRGVLVAARTDLNPTSLDI
FT                 PTPQEIDAVACQVRCRLGKLTIVSVYIHPNTVVSQNTFEDFFNSIPQPCIL
FT                 AGDWNAKNPAWGGDIQNQRGTNLLAALDVSRFVVLNDGSYTRFDANRLPSA
FT                 IDLTIASADISLLFEWAPLDFPYGSDHLPITFGTTTEVVEEQQPGINYKRL
FT                 DWEKFSTLLDERVKLLSPTASYEVFFETVWRSLTDATPTKSSTQVRKLPQP
FT                 YWDTELQTALEDRRDKFRAWRRKLDYESYCIYTDAEQHFKVLVNRKQRESW
FT                 RSLCDSFDSQTSVQKLWRLGRRYKNRVTGANHRLRDEVQLNKLLDKLAPPS
FT                 TSREPLEFNQCNCSCTTAGAYFTTNDLDSAIKPGQDTAPGVDGICYSVMRN
FT                 LPFTAKMKLLRIYNDIFDTGRIPEAWKVFKVIPILKPGKPPSDASSFRPIA
FT                 LASCFRKCYENMIKEKIEWYIESNKLFPHEICGFRKGKGTLDALHILVDQV
FT                 QLALNNNQHVIACSVDVEGAYDNVQIEVLVAQMRRLGISECLVKAVYSLFK
FT                 ERLLHAVLDGNPIQRVTWVGLPQGSPLSPLCFNIVIFSLFGFRIAGVFYLD
FT                 FADDITVACRGANLDESIRNIQTAIDEVVGRINALALRVAPSKCSSIIFSR
FT                 RAVDDDRTPVLTVDGSPVPYLRSIKLLGLHLTPTLSWRKHFLYVKHRAATY
FT                 TNFMRSVAGQSWGADPAALLTIFKSCIRPILEYASIFFTGAPQADTIILDR
FT                 IQWSCIRIALGSTKTTHTGSLEVLSGLMPLKHRREMATMKFVERRFSLLPW
FT                 HERFVNTTLEGQSSTWIRRNILQYRAFSGWLSTRDTLPCFQFDLDTRRVAV
FT                 KVDLSVHRAMQEGLHQPASDRVEAEIQRNYSNATLLATDGSKDGNGVGYAV
FT                 VDSRMRTVHSTKTHKLLSIFHAELLALRQAVEIIAGSGAGEYVVLTDSLSS
FT                 LMSLSNSRVSSHQPSVWFEIKRFISQISERGANVTFMWVPAHRGVPLNEAA
FT                 DRAANQARITGGSENYNLTSLDISFPARKRAMEHWQLDWDNGTKGRFCNKI
FT                 VPTVDTSPWFADRDXNRREIVVLSKLISNHSRLPAHLWRNNIVEDATCQCG
FT                 ESSATPDHLLFTCDLYDDDRRALWRAIVSQKEIPDLELVLKSQNDVVLRAI
FT                 VKFFDDAAIDL"
XX
SQ   Sequence 5023 BP; 1369 A; 1285 C; 1266 G; 1098 T; 5 other;
     agttctgttt gagcctccgt gagtcacagt cgtttcgcac tgaagctgct acacaatagc        60
     accaccgtcc acattgttcg ccgattgaat agctaccgca agccgagaag aatgactacg       120
     acggaggcca ctactcgtcg ggtgagacaa tatccagacg aggcgaccgg tccgttcttg       180
     gtcattgcgg aagctaccgg agaggacaat ctacgaccaa caaacctctc taagaccatc       240
     attggcatgt accagcagga ctacgtacgt gccgtagttc tgtccaggag acgcatgaaa       300
     attcttatga ggaccgggca ggctgcgaat gacctcgttg ccacccggac aatcaagaac       360
     gtccaatttt cgatcccgca acgcctcgtc gaagtactgg gagttgcaca cattgagttg       420
     gaggttgacg aagatgactt ggcgaacgct acgacgttcg acaaggggaa aatgatgcag       480
     ctccataacc ccaaaattgt cgagacgcgt cgtatgagaa agcgcgtcga cggtgttgac       540
     aagatgctaa ccactgttgt ggttaccttc gaaggncaaa aactaccaac ccatctcatc       600
     atcaaccagg tgctgtaccc ggtcaaggag tacgtctacc atactcgcca atgccgcaaa       660
     tgttggcgta tgggccatgg ggaaaaaaac tgcagaggta aagcgcgctg caagaagtgt       720
     gcccaagaaa taacaaccac gattgctgag catgcatgcg aggtcgccgt tccagtctgc       780
     attaactgca agggcaatca cgaagcggac gacaccaaag cttgtccgaa agctatcaag       840
     cgcaaagagg atgaccaaaa acggaaggaa gcgcactctc aaggaaaaac ggactggttc       900
     tctaccgctg gtctagctga agagacctcg ggcagtcaac cggtgagcac tcttactgag       960
     gaaaccatcc cggcgccgtc aacctcggga gcacagtcta aaccagctaa gcgcaagtgt      1020
     ctcgacgaca acactgatga cagctctgag gaagaagaga tcccgcgact caccgtacac      1080
     atcgaagaag gaatccgtaa cgctatccaa caggccatca actccgatga ggccacacta      1140
     gcaatcagcg gcgtgctggg ggcgccgcct agcgagattc cagatgaccg actagaagat      1200
     gctctcaagg ccagactgtt tgacatccta gcccagagga ccgatgacta catcggtact      1260
     ctccggttat aataaaccac caagggcacc ccagcccagg cattccctct gcagttccta      1320
     cagtggaact gcagaggagc cttgagtaaa aaggcaagta tcatcaattt gattaattct      1380
     acccactcct cgatcctatg tatctgtgaa agccacctgg attctgcagc caatttcgac      1440
     attccaggct ttcatctgtt ccggaaagat catcaaagca actccagggg tgtactcgta      1500
     gctgctagaa ccgacctaaa tcccacatcg ctggacatcc caaccccgca ggaaatagat      1560
     gcagtggcct gtcaagttcg ctgccgactc ggaaagctga cgatcgtttc ggtgtatatt      1620
     catccgaaca cggtcgtgtc gcaaaacacc ttcgaagact tcttcaacag catccctcaa      1680
     ccgtgcatcc tggcagggga ctggaacgct aaaaatccag cttggggcgg agacattcag      1740
     aaccagcgtg gaacgaacct tctggcggct ctggatgtgt cgagatttgt agttttgaac      1800
     gatggcagct acacacggtt cgacgcaaat cgtttaccaa gtgcaattga cttgaccatt      1860
     gcctcagcgg acatcagctt actcttcgag tgggctccgt tagatttccc ctacggtagc      1920
     gaccatcttc cgattacttt cggcacgaca acggaagtgg tggaagaaca gcaaccggga      1980
     ataaactaca aaaggcttga ctgggaaaag ttctccacgc tgctggacga aagagttaag      2040
     ctgctgagcc ctacagcaag ttacgaagta tttttcgaga cggtgtggcg aagcctaacg      2100
     gatgcaacac caactaaatc gtccacccag gtgagaaagc taccgcagcc ctactgggat      2160
     acggaactgc aaacggcgct ggaggacaga agggacaagt tcagagcatg gcggagaaaa      2220
     ttagactacg aaagttactg catctatacg gatgcagagc aacatttcaa agtcctagtc      2280
     aacaggaagc aacgagaatc gtggaggtca ctttgtgatt ccttcgattc ccaaacgtct      2340
     gtccagaaac tttggcgtct cgggcggcga tacaagaacc gtgtcactgg agcgaatcat      2400
     cggttgcggg acgaagttca gcttaacaag ctactcgaca agttggctcc cccatcgacc      2460
     agcagagaac ccctggaatt caaccaatgc aactgcagct gtactacagc cggagcttat      2520
     ttcaccacaa acgatctgga cagtgccatc aagccggggc aagacaccgc accgggcgtg      2580
     gacggcattt gctactcggt tatgcgcaat ttgcctttca ctgcaaaaat gaaactcctt      2640
     cgcatataca atgacatctt cgacaccggc cggattccag aagcctggaa agtcttcaag      2700
     gtcataccga tcctcaaacc cggtaaacct ccgtctgacg ccagttcctt ccgcccgatc      2760
     gcactcgcct catgttttcg taaatgttac gaaaatatga taaaagagaa gatcgagtgg      2820
     tacatcgaga gcaacaaact ttttcctcac gaaatatgcg gttttcggaa agggaaaggt      2880
     actctagatg cgctacacat cctggtggac caagttcagc tggcgttgaa caacaatcag      2940
     cacgtcatcg cgtgtagtgt tgatgttgaa ggcgcttacg acaacgtaca gattgaggtg      3000
     ctagtagcac agatgcgccg attgggaatc agcgagtgcc tcgtcaaggc tgtgtacagt      3060
     ctgttcaagg aacgtctgct ccacgcggtt ttggatggta acccaattca acgggtgaca      3120
     tgggttggac taccgcaagg gtctccgttg agtcctctgt gtttcaacat cgtgatcttc      3180
     agcctcttcg gattccgtat cgcgggggtt ttctacctgg attttgcaga cgacataaca      3240
     gtggcgtgtc gaggagcgaa cctcgacgaa agcattcgta acatccagac ggcgatagac      3300
     gaagtggtag gcagaatcaa cgcattggct ctacgggtag ctccgagcaa atgtagttcc      3360
     ataatcttct cgagacgagc agttgacgac gataggacac cggttctaac cgtcgacgga      3420
     tcacctgtac catatctgcg aagcatcaaa cttttggggc tgcatcttac accaacgctt      3480
     tcctggcgaa aacattttct ttacgtaaag catcgagctg ccacctacac taatttcatg      3540
     cggtcggtag ctggacagtc ctggggtgct gatccggcgg ccttgttgac catcttcaaa      3600
     tcctgcatca gaccaatcct ggagtacgcc tcaatcttct tcaccggtgc accgcaagct      3660
     gatacgatca tccttgatcg cattcaatgg agctgtatca ggattgcatt aggatctaca      3720
     aaaacgacac acacgggttc tctagaagtg ctgagtggac tgatgccatt gaaacaccgg      3780
     agagaaatgg cgacaatgaa gtttgttgag cgccgttttt cccttctacc atggcatgaa      3840
     agatttgtca acacgacctt ggaagggcaa tcgtcaacgt ggattcgacg taatatcttg      3900
     cagtatcgag ctttcagtgg ttggttgagc acgagagaca ccctgccatg tttccagttc      3960
     gacctagaca ctcgccgcgt ggctgtaaag gtcgaccttt ctgttcatcg agctatgcag      4020
     gaagggttgc atcaacccgc cagtgatcga gtagaagcag aaatccaacg taattattct      4080
     aatgcaactc tgctagcaac ggatggatcg aaggacggaa acggagtggg ctacgcggtt      4140
     gttgacagcc gcatgcgcac cgtacacagt accaaaacgc acaaactgct gtcmattttc      4200
     cacgctgagt tgctggcgct gcgacaagcg gtggaaatta ttgctggatc cggtgctgga      4260
     gaatacgttg tgctaactga cagcctgagc agcttgatga gtctgtctaa cagccgggta      4320
     tcctcccatc agccgagtgt gtggttcgaa ataaagcggt tcatctccca gatttctgaa      4380
     cggggcgcta atgtcacttt catgtgggtc cccgcacacc ggggtgtccc attgaatgag      4440
     gcagcagatc gcgcagctaa ccaagcacgg attactggtg gatcagaaaa ctacaatctt      4500
     acgagcctcg acattagttt cccagcacgc aaacgtgcga tggagcattg gcagttggac      4560
     tgggataatg gaacmaaggg gagattctgc aacaaaatag ttcccactgt ggacacttcc      4620
     ccgtggtttg cggatagaga ctwcaaccgg cgggaaatag tagtgctgtc gaaactaatc      4680
     agcaaccatt ccagacttcc tgcgcatctg tggaggaaca acattgttga ggacgcaacg      4740
     tgccaatgcg gcgaatcatc tgctactcca gaccacctgc tgttcacctg tgacctgtac      4800
     gatgatgatc gacgtgccct gtggagggcg attgtgtccc aaaaggaaat cccggacttg      4860
     gagcttgtgt tgaaatcaca aaacgatgtt gttttgcggg ccatmgtgaa gttttttgat      4920
     gatgctgcta tcgatctgta aagtgctgta gaagaatcaa aacttggcca acttatggca      4980
     acaagaggcc agcaacctaa taaaaaaaaa aaaaaaaaaa aaa                        5023
//
ID   I-5_DBi     repbase;    DNA;    INV; 5282 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5282
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 929-929 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..1403
FT                 /product="I-5_DBi_1p"
FT                 /translation="MSRPPDRPPDRPLTTINTIKSEPKYIIITRTDNGKFE
FT                 KISPFIIKKVIDYTCNGPVXTCKKLRSGTLLVKTKNHIQAQKLLKMQLFHX
FT                 FPVHXEEHKTLNSTKGIIYSNDLRNIDENEILEELKPQNVIDVRKILKKDK
FT                 NDSNKTTETGLIILTFATITLPDKLWIGYEVVNIRPYIPPPMRCFNCLRFG
FT                 HPSSHCKSPKTCANCSEEIHTTDNEPCTNTPTCINCKYEDDQXKHHNAMDK
FT                 SCPAFIKQKELTAIKITQKVDHKTARFIYNTRHTHLPISYAQKAAITAHKE
FT                 PATETTTHATTTSKTSPPTPNPIARQIITYEDSPEEHMDTTASTSLYSTRS
FT                 EISEELKLKIFTTKPNKLGTTLKSKDKNNQKTKAEKKTSKKCKISDNMNIM
FT                 STDEDLDL"
FT   CDS           1473..5096
FT                 /product="I-5_DBi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKVLQLNINGYLNNYNHLQILIKKQHTNHIPIPINY
FT                 TLYHINTSNNPYGGVALLIHNSLQQEQTQIHNISFDSVAVTVQSKVKFTII
FT                 SSYIPPNKPFTLQELQDTYNNINTPCLITGDFNSWHKSWGSQNNNARGNLL
FT                 FKFINQSLLTTLNNGSPTHFTTHHTFTHIDLSLASPELFLHAKWTIDNQLS
FT                 GSDHFPISIQLFGNESTDSSISKPKFNIDKANWPLYQKLSKQFSDDRPLSQ
FT                 QINQETAHLCTIMKHSAHLSIPQYHPNSSNQVPWWDSDLQILKTNKKIAWK
FT                 NMCRNINTANIIAYKKANAILKREIKQKKRIALYEFTSDVNPQTPIPTIWK
FT                 RINRFCGLKTSTQIHCLINPNNPSDIHTSKYDISKALCEFWSNASLNNNFH
FT                 PTFISHKENISFNFSHSTSPLTQSLECDISIIELKSALNQLKGKTPGRDRI
FT                 SYPMIKNLPDSVMQRLLKLYNNILNAHIPQQFKVSNVIPILKPDSNKTEIS
FT                 SYRPISLNSCLSKVMDKIISKRLWWLVNNSQLLDSRQMGFRKGKSVSDSLA
FT                 TLDYLTTTTLSRKSHISIISLDFSKAFDKIGIHTILDELVYWKLGPKIMKY
FT                 IINFLTNRKICVQIQDIQSQPLPLENGIPQGSPLSVILFAIAYNKVNRIIG
FT                 LHKSFEFTAYADDYTIINRHKRTDKTINVNPLLTDIQEWCKYSGASLSIPK
FT                 SKFLHICRKQKCNFKLISTFNLKNVKSLKILGVTITNNYKWDAHIDRLTTQ
FT                 ISKRLNIIKCLSSTSFNCHIKTIIYIIHSIIMSKIDYGLFLYGKAPKSKLN
FT                 KIKTMYHSAIRIAFGAFRSSPINNLLYESNIRPIEQRIKHATLKNFKMIST
FT                 AKKTPLEQIIKKISKTKRIPKLTSAIKDTIDHCKALQLHPVPITNKKETTP
FT                 TWSFNFSKINKSLHTLLKPNTPPIVYNKNFLEIKYTLKKHTFLYTDGSKSD
FT                 KGVAYSVTSSQQVITQKILPPYSSIFTAEVAAILHACRYAERQKGKFAICT
FT                 DSLSALTALENPNNSTYYILEIRKIMSKYKYKYTLIWVPGHCGIIGNELAD
FT                 KAAKQATSLPLISEQNYNIHDTLKYISNHMKAQNDLIWNNTSVHYKLINTK
FT                 KQNNIDLLNPTTSRLDTIKFMRLRIGHTKLTHCHLFDKTPPPTCQQCSQNL
FT                 TLSHIFLECPRYIEQRHKFLQQSLEEIVDPMNISTTIQFLKSINLYNNI"
XX
SQ   Sequence 5282 BP; 2103 A; 1326 C; 615 G; 1227 T; 11 other;
     tatcagtttc actccgagct tcaaagagtt aagacgtgca actaacctac gctccaagct        60
     acagcttatc agtttaatct accaaccgat catccgattc gaaaacttct tcgcgattaa       120
     ccgaaaagaa acgaaaccta taaacaagtg aacttgcttt acttacgcac caagggcccg       180
     agcccaaaac aactacaatg tctcgtccac ccgaccgacc gcccgaccga ccactgacaa       240
     cgattaacac gataaaaagt gaaccaaagt acataattat taccagaact gataatggga       300
     aatttgaaaa aatatcacct tttattatta aaaaagtgat agactacacc tgtaatggac       360
     cagtcgawac atgcaaaaaa cttagatctg gtacccttct cgtcaaaacg aaaaaccata       420
     ttcaagctca gaaattactt aaaatgcaat tattccacam cttcccggta cackccgaag       480
     agcacaaaac tctaaactcc accaaaggca ttatatactc caacgatcta aggaacattg       540
     atgaaaatga aatcttggaa gaactkaaac ctcaaaacgt wattgacgtc cgaaaaatat       600
     taaaaaaaga caagaacgat agcaataaaa cgacagaaac aggccttatc atacttacct       660
     ttgcaacaat taccctaccc gacaaactct ggataggata cgaagtggtc aacatacgac       720
     catacattcc wcctccaatg agatgcttca actgtctcag atttggacac ccctcctccc       780
     actgtaaaag ccctaaaaca tgcgccaact gctccgaaga aattcacaca acagacaacg       840
     aaccatgcac caatacccca acctgcatca actgcaaata cgaagatgat caaatkaaac       900
     accacaacgc tatggacaaa tcatgccccg cctttatcaa acaaaaagaa ttaacagcca       960
     tcaaaataac gcaaaaagta gaccacaaga cagcccgctt catatacaat acacgccata      1020
     cccacctacc aatatcctac gcccaaaaag ccgctatcac tgcacacaaa gaaccagcta      1080
     ccgaaacaac aacgcacgca accactacat caaaaacaag cccaccaacc ccaaatccta      1140
     tagctagaca aattatcacc tatgaagact cccctgaaga acacatggac accactgcat      1200
     caacatcatt atactccaca cgctccgaaa tttcggaaga acttaaatta aaaatattca      1260
     caaccaaacc aaataagtta ggaactacct tgaaatcaaa agacaaaaac aaccaaaaaa      1320
     ctaaagccga aaagaaaact agtaagaaat gtaagatatc tgataacatg aatataatga      1380
     gcacagatga agatttagac ctatgaaatg atatgtaaca tattaataga aacttatttt      1440
     agttctagtt atccttaaac tatgccctta acatgcttaa agtattacaa ttaaatataa      1500
     atggatacct caataattat aatcacctac aaatactcat aaaaaaacaa cacaccaatc      1560
     atattcccat cccaataaac tacactcttt accacataaa tacctcaaac aacccgtacg      1620
     gcggggtagc tctcctaatc cacaactctt tgcaacaaga acaaacccaa atccacaata      1680
     taagctttga ctcagtcgcc gtaacagtac aatctaaagt aaaatttaca ataatttcta      1740
     gttatatacc tcccaacaaa ccwttcaccc tacaagaact acaagacact tataacaata      1800
     ttaacactcc ttgcctaata acaggcgatt tcaacagctg gcacaaaagt tggggatcac      1860
     aaaataataa cgcacgaggc aacctgttgt ttaaatttat aaaccaatcc ttgctaacca      1920
     cactcaataa tggctcccca acccacttca ccacacacca cacatttaca catattgacc      1980
     tctccttagc ttcccctgaa ctattcctac acgctaaatg gacaattgac aatcaactct      2040
     caggtagtga ccacttcccg atctcaatcc aactttttgg aaatgaatca actgactcct      2100
     ccattagcaa accaaagttc aatattgata aagctaactg gcctctctat caaaaactta      2160
     gcaaacagtt ctccgatgac agaccactca gccaacaaat aaaccaagaa acagcacacc      2220
     tttgtaccat catgaagcat agcgcccatt tatccatacc acaatatcac cctaactcat      2280
     ctaatcaggt cccctggtgg gactccgatc tacaaattct aaaaaccaac aaaaaaatag      2340
     cctggaaaaa catgtgtcgt aatataaaca cagccaacat aatagcctac aaaaaagcca      2400
     acgccattct taaacgagaa ataaaacaga aaaaacgcat agccctatac gaatttacct      2460
     cagacgtaaa cccacaaacc ccaattccaa caatatggaa aagaatcaac agattctgtg      2520
     gccttaaaac tagcacacag atacactgtc tcattaaccc taacaaccca tctgacatcc      2580
     atacaagcaa atacgacatt tccaaagccc tttgcgaatt ctggtcaaat gcatcactta      2640
     acaataattt ccatcctact tttatatcac acaaagaaaa cattagcttc aatttctccc      2700
     acagtacatc tccactaacc caatccttag aatgcgatat ttcaattatc gaattaaaaa      2760
     gcgctttaaa ccaattaaaa ggcaagacac caggtagaga ccgtattagt tacccgatga      2820
     tcaaaaatct accagattca gtaatgcaaa ggctacttaa actatataac aatatcctca      2880
     acgcacatat tccacagcaa ttcaaagtaa gcaacgtaat accaatatta aaaccagact      2940
     caaacaaaac cgaaatatct tcctacagac ccatatccct gaatagctgt ctatctaaag      3000
     tcatggataa aataatatct aagcgactat ggtggctagt caacaacagc cagctactcg      3060
     atagtcgtca aatgggtttc agaaagggta aatcggtatc tgactctcta gcaacgctag      3120
     actatctgac taccaccacc ctctccagaa aaagccacat ttcaataatt tcactagact      3180
     tctcaaaagc atttgacaaa ataggaattc acacaatcct agacgaactc gtatattgga      3240
     aattaggacc aaaaattatg aaatacataa taaactttct aaccaatcga aaaatttgcg      3300
     ttcaaattca agacatacaa tctcaaccct tgccacttga aaatggaatc ccccaaggat      3360
     caccattatc agttattctg tttgccattg cctacaataa agttaataga atcataggtc      3420
     ttcacaaatc atttgaattc acagcatacg ctgatgacta tacaattata aataggcaca      3480
     aaagaacaga caaaacaata aacgtaaacc cactgcttac tgacattcaa gaatggtgta      3540
     aatactctgg agccagtctt tctataccca aatctaaatt cctacacatt tgtcgcaaac      3600
     aaaaatgcaa ctttaaattg attagtacct ttaacttaaa aaatgtaaag tctctaaaaa      3660
     tacttggtgt taccataacc aataattata aatgggatgc kcacatagat cgactaacaa      3720
     cacaaatttc taaaagacta aatattataa aatgtctatc tagcactagt ttcaactgcc      3780
     acattaaaac tattatctat ataatccact caattatcat gtcaaaaatt gattatgggt      3840
     tatttctata cggaaaagca cccaaatcaa aacttaacaa aataaaaaca atgtaccatt      3900
     cagctattag aatagccttc ggggcctttc gctcctcacc aataaacaac ctactatacg      3960
     aatctaacat aagaccwata gaacaaagaa ttaaacatgc tacattaaaa aactttaaaa      4020
     tgatatccac cgcaaaaaaa acacccctag aacaaattat taaaaaaatt tcgaaaacaa      4080
     aacgaatccc aaaactgaca tcagcaataa aagacactat cgaccactgc aaagcactac      4140
     aacttcaccc tgtccccata actaataaaa aagaaaccac gccaacttgg tccttcaact      4200
     tttcgaaaat aaacaaatcc ttacacacct tattaaagcc aaacacacca ccaatagtct      4260
     acaataaaaa cttcctagaa ataaaatata ctctcaaaaa gcacacattc ttatacacag      4320
     acggttccaa atccgacaag ggagttgcct acagcgtaac ctcctcacaa caggtcataa      4380
     ctcagaaaat acttcctccc tattcatcca ttttcaccgc tgaagtagca gccattctcc      4440
     acgcatgcag atatgcggaa aggcaaaaag gaaaatttgc tatttgcact gactcactct      4500
     cagcccttac agcactggaa aacccaaata actcaacgta ctacatatta gaaattagaa      4560
     aaataatgtc aaaatacaaa tacaaataca cactgatatg ggtcccagga cactgcggca      4620
     taataggcaa cgagcttgca gacaaagctg ctaagcaagc aacctcactg ccactaatat      4680
     cagaacaaaa ttacaacata cacgatactc ttaaatacat tagtaaccac atgaaagccc      4740
     aaaacgacct aatctggaac aacacatctg ttcactacaa actaatcaac acaaaaaaac      4800
     agaacaatat agatctmtta aacccaacta cctcccgatt agacaccatt aaatttatga      4860
     gactccgaat tggacacact aaactgactc actgccacct atttgacaaa acacctcccc      4920
     ccacatgcca acaatgtagc caaaacctta ccctatcaca catattcctt gaatgcccca      4980
     gatatattga gcaaagacat aaattcctcc aacaatcttt agaagaaata gtagacccca      5040
     tgaatatatc cacaacaatc caatttctga aatccattaa cctctataat aacatttaaa      5100
     tttaattcga atgtacatac aaacctagat taagtacaca tatgcatata catctatatt      5160
     taagtcaaat gtcacataga gtttaagcag aaggcctttg tagctattgc ttaatacaaa      5220
     caaaaattac ccgcacttta taattgctgg caatttcgtt ataataataa taataataat      5280
     aa                                                                     5282
//
ID   I-5_DBp     repbase;    DNA;    INV; 2975 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2975
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 705-705 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           242..2686
FT                 /product="I-5_DBp_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="TILSLTHPIDKNATLIEEEFSILELHAALNKLKGKTP
FT                 GSDRITYDMIKNSSSIVKHRLLQLYNKIFQSDIPQNYKLSIVIPIAKPNSD
FT                 KTSLNSYRPISLNSCFAKVLDKMIANRLWWLLTSNKLLNKNQFGFIKGKSV
FT                 SEALLLVDHLITKSLQRKNHISILSLDFHKAFDKIGIHTILNQLVSWHVGP
FT                 KIIGYIKNFMTNRKIKVKIGNAFSRTLDLHNGIPQGSPLSVVIFTIAYNKL
FT                 CEIIQSHKEISFCSYADDFNIIRPLGKSKNLDINFSNILTDIRNWCNYSGA
FT                 SLSVEKCKHIHICRKYNCRCKPTTSGFNISDVDTLKILGLTINKKYNWNSH
FT                 IKSLIPSIQNRLNIIKTLSSNKLNCSPQTLLNAVKALIISKIDYGIFIYGY
FT                 STKSNLNKIKTVINAAIRASLGAFSTTPIYNLLHESRIYPLEIRRDLITSC
FT                 QLKSLLNSNDSPILTLVKQIKRSKLFFKYKLQSALGRIVRISIDHSLPSTP
FT                 PKFINNKTAPNWQLNDNSINLTLTTYNKHNTSPVIYQKLFSEIKNTLKDFE
FT                 FIYTDASKTESTTSFSITSINKCINSSILPHYTSVYSAELIAIFQAITLHK
FT                 NSSKKIAICSDSLSSLKNISNPNTQCIYAKYIRNTLYNNPKIKLIWIPGHV
FT                 QITGNEFADTSAKAACSRPLHMTSNXNFRDINRYLKFTSKNIFHDSFSKTS
FT                 TWYKEIHKNKTFIDLNAKKLTYNRNDIIKFTRIRLGHSRLTHAHLFDRNPV
FT                 PNCQFCNSTNNTIKHVLTDCPKFRSIRNNIFQNADPILSISFPTTESFDKI
FT                 IQYLKQTRTYNLI"
XX
SQ   Sequence 2975 BP; 1125 A; 677 C; 336 G; 833 T; 4 other;
     cacgacttta catcagatgt acaaccaact tccaacccta agattatttg gaataacatc        60
     agaagatwtt gtggcctaaa aacctctata cccatmcact gcmttctacc aattaattaa       120
     aacaatcagc ccattataga gaaaagagat atagcaaacg aattttgctc cctctggtct       180
     aaaaactctg atgactgtaa cttcgatagt agctttcttg caaataaaaa ctccacacta       240
     aacaatatta tccttaactc atccgataga caaaaatgca acacttattg aagaagaatt       300
     ctcaatttta gaactccacg cggctcttaa caaactaaaa ggcaaaactc cagggagtga       360
     caggattaca tacgacatga ttaaaaattc ctccagtatt gtaaaacata gactactaca       420
     attatataat aaaatctttc agagtgacat accgcaaaac tataaactga gtattgttat       480
     cccaattgct aaaccaaact ctgacaaaac atctcttaat tcgtaccgtc ccatttcact       540
     aaactcttgc tttgctaaag ttctcgataa aatgatagcc aataggcttt ggtggctttt       600
     aactagcaac aaactattga ataaaaatca gtttgggttc attaaaggta aatcggtatc       660
     tgaagctcta ctcttggtag atcatctgat cactaaatct ttacagagaa aaaaccatat       720
     ctcaatacta tctctcgact tccacaaagc ttttgacaaa attggaattc atacaatttt       780
     aaatcaactc gtttcctggc acgtcggccc caaaattata ggttacatca aaaacttcat       840
     gacaaaccgg aaaataaaag tgaaaatagg gaatgctttc tccagaacgt tagacctcca       900
     taatggaatc cctcagggat caccactatc cgtcgttatt tttacaatcg cttacaataa       960
     actatgcgaa ataatccaaa gtcacaaaga aatatcgttc tgctcctacg ctgacgattt      1020
     caacatcatt cgccctcttg gtaaatctaa aaacctcgat attaacttta gcaacatact      1080
     tactgacatt cgaaactggt gtaactactc aggtgctagc ctctcagtag agaaatgcaa      1140
     gcacatacac atatgtagga aatataactg tagatgcaaa cccactacat caggattcaa      1200
     tatatcagat gttgacaccc taaaaattct cggactcaca attaataaaa aatacaactg      1260
     gaactcgcac ataaaatccc ttattccttc aatacagaat agacttaata taatcaaaac      1320
     tctctccagc aacaaactaa attgcagccc acaaacttta ttaaatgcag tcaaagcgct      1380
     aatcatctct aaaatagact atggtatttt tatttacgga tactctacaa aatcaaatct      1440
     caacaaaatc aagacagtca tcaacgcagc tataagagcc agcttagggg cgttttccac      1500
     aacgccaatt tacaacttat tacacgaatc tcgtatctat ccactggaga ttagacgtga      1560
     ccttataacc tcatgtcaac ttaagtcttt attaaatagc aatgactctc ctatcttgac      1620
     tctggttaaa caaataaaaa gatccaaatt attctttaaa tacaaacttc aatctgcctt      1680
     aggaagaata gtgcgtatct ctatagatca tagtttaccc tctactccac caaaattcat      1740
     taacaataag accgccccta attggcaact aaatgataat tcaataaatc ttactctcac      1800
     tacttacaat aagcacaaca ccagcccagt aatatatcaa aagctattct ctgaaattaa      1860
     aaatactcta aaggacttcg aatttattta tacagacgct tctaaaacag agagcacaac      1920
     cagcttcagc atcacctcaa ttaacaaatg tataaatagc agtattctac cacactatac      1980
     atcagtctac tcagccgagt taatagcaat tttccaagcc ataaccctac acaaaaactc      2040
     ttcaaaaaaa atagccatct gctctgactc actttcttct ttgaaaaata tctccaaccc      2100
     caacacccaa tgcatctacg ctaaatatat ccgtaacact ctttacaata acccaaaaat      2160
     aaagttaatt tggatacctg gacatgtcca aattacaggc aatgaattcg cagatacatc      2220
     tgcaaaagcg gcttgttcta gacccctcca tatgacatca aaccwtaact ttcgagacat      2280
     caatagatac ctaaaattta cttccaaaaa cattttccat gattcctttt caaaaacttc      2340
     aacttggtat aaagaaatac acaaaaataa aaccttcata gacctgaatg ccaaaaaact      2400
     cacctacaac agaaacgata taataaaatt caccagaatc cgcctaggtc actccagact      2460
     cacacacgca catctttttg accgtaatcc ggtaccaaat tgccagttct gcaacagtac      2520
     aaacaacaca ataaaacacg ttctaaccga ctgccctaag ttcagatcca ttagaaacaa      2580
     tattttccaa aacgccgatc ctatattatc aatttccttc cccacaacag aatcctttga      2640
     taaaatcatc caatatctca agcaaacaag aacatataac ctaatataat tttttttagt      2700
     ttaatctgta cattaataag aaacataatc tacctgcata ttctaactgt aaaacaagaa      2760
     catataacct aaaattaatt tctagtttaa tctgtacatt aataagaaac atattctacc      2820
     tacatattct attctacaaa aaacaaatct aatatctaca taagcataat tatccctatc      2880
     actataagta agccgaaggc cttgctgcta tggctttagt cataaattag cttataattt      2940
     taattataac ctaattatta ataataataa taata                                 2975
//
ID   I-5_DF      repbase;    DNA;    INV; 3352 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3352
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 967-967 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3352 BP; 1193 A; 781 C; 490 G; 837 T; 51 other;
     caggcaaatc taataacctt aaacgatgga tctccaaccc acttctcaam kcatcactca        60
     ttgactcacg tggaccttac gataacaacc cccaacttag ccacacatgc gaaatggaaa       120
     amagacaagg atctctttgg aagtgaccac tttccgattc acattaactt gtttgaaaat       180
     gaacgckccg aaaactacat aaaacgtccc aagttcaagg twgaatcagc agactgsccs       240
     ctcttcgcaw cgctctcaga aaagttccat aacgaaaaac cwacttccaa caatgtcaac       300
     caagaagcwg ctaacatwgt aaaaattata aggcaaagcg cgaacttagc tatmccccaa       360
     acatcaccta atggcaatag gmccaaaacg gtgccatggt ggaacaaaag tctggaagaa       420
     ctcaaastca acaaaaataa agcatggaac caattamaaa ggaacgtaaa tacggagaac       480
     ataatacaat ttaaaagaaa caaggcccka ttcaggaggg aattaaaaca ascaaaacgg       540
     saatcccttt taaatttcac ggcagaaatc aaccccagct catcttcctc aaagatttgg       600
     gcaaatatca acacattctg tggtaggaaa attagacacg aaattcactg catatcctcc       660
     ccctcaaccc catccctaaa aatcattgat aagcaatcca tagcccaact ttttgcctcc       720
     cattggtcag aaacatcttc cgactcgaac ttcagtgact cttttcgaag waacaaagaa       780
     aaataaactc cgaaaatwtc atttatagca cwtcgtcgaa agctctcatg ctagamaaag       840
     aaatcacgtt aattgaattc aaagcagckc taaatgcact tgaaggaaag accccaggac       900
     ttgacagaat ttcwtacccg atgttaaaaa atctcagcaa accatgtaca attcgcttga       960
     tcaacckwta caataacatc ctcaacagcc atacccccag cagttcaaaa tcagttctat      1020
     tttaccaata tataaaccta actcacctaa aacttcagta aactcgtatc gcccaatttc      1080
     cctcaaccct tgcatatcca agcttctaga caagaccatc gcaaaccgac tttggtkgat      1140
     tgctgtcaac agcaatcttc tggatagtcg acagcttggc tttcgaaagg gcatgtcagt      1200
     atctgagtgt ctaacactgt tagactacca gactacgaca tccctatcca cgagaagtca      1260
     tttatcggtg ataagtcttg atttcgagaa agcctacgac agagtaggta ttcatgcmat      1320
     aattgatgaa ctaktaagat ggaaaattgg tcccaaagta ttagactaca taaagaactt      1380
     cctcaccagt cgcaaaatta aagtccaaat cmacaatcat ttttctgaaa gccgtccact      1440
     tcacaatggg atmcctcaag gatctccatt gtcagttata ctcttcttaa ttgcctacaa      1500
     caaactttgc cgcactwttg aggtacacaa agggttccaa ttcgcttcct atgcggatga      1560
     ctttactatt gtaaagagag ttagcagaaa aggtaaatca attaacatca atccactktt      1620
     taatgatatw ttgagttkgt gcgagtactc mggakcaaaa ctctccgtac agaaatgtaa      1680
     acacctgcat atttgcagaa agcacaaatg caattttckt atcawgtstc aagcttaccc      1740
     ccttgkkcaa gtgaactccc tcaagatcct tgggccaaca ataacaaata ggtataggtg      1800
     gaaagaacat gtagawtcwc tggtwgttca aatcactaaa agcctaaaca ttataaaatg      1860
     gttagggaac caaaaataca actgcgatgt caggagcctw attaacacta ttaattccct      1920
     tataatgwcc aagatagact actgtcttcc attttacggt aactgccccc cctcktatct      1980
     aaagaaaata aagtatatct accactcagc catcagwgta gctttcggag ctcttcgatc      2040
     aacgccaatt aagaatcttc tctwtgggtc tgaaatattt ccaatcgagt tgagacwcga      2100
     cctgaccgct gcaaaaattt ataagtcatt ttcatataca tcccatactc cactccaaaa      2160
     cattctaaaa aaataaaaaa atcgaaaaga aaacctaaag ttatatcagt catacaaaaa      2220
     gctatgaaat tcgcctatga atatgaaatc ctttcccccc ctccaaaatt gatcagacaa      2280
     aaaatccctc catggttctt tgaggaagac tcagttaacc tatccttgca ctcctcttta      2340
     aaaacaacaa cacctccagc agtatttcga agaaaattta tgtctatcaa agaattgtac      2400
     gaagactatt tgttcatcta cactgacggc tcaaaatcag atcaaggcgt aacttatggc      2460
     gtcactaccg atacccacat cataaaaact gctatattac caacccacag ctcggtattc      2520
     acggcggaag tggcagccat ttatgctgct tgtcaatatg ctgagagaca aaagcggaaa      2580
     ttcgtcatct gttctgactc attatcatcg ctacaatcaa tccgtaatat aaacaacaca      2640
     tccttttata ccgctaaaat cagagacatg ctgaaccatc actatcctaa gattttgcta      2700
     ttgtggatac caggtcacac aaacataact ggcaacgata tggcagattt tgctgccaag      2760
     ggtgcacatt ccctcccaaa aatcctagag accaattaca actttaagga tacacagagg      2820
     ctgatgaaaa atattgcctc aagattactc ttatcgatat ggtattcgac atccgagcac      2880
     tacaaatcca tgaaccctaa taaattatcc ctaaaagatt ataacttcaa tacagaacat      2940
     aacatcagcc gtttagacat gattaaattc attagattaa ggttcggaca cacaagatta      3000
     acaaaagaac acctatttaa caaacaacct cccccacaat gtcaacgctg taactcaaat      3060
     ataacgatac gtcacatcct attagagtgt cctctctaca tagaggaaag aaataaaact      3120
     ccatcctcaa acccagcaga tctcctagta cccaacacca aaaacatact ctccaccatg      3180
     aaatttttta aaagaataaa actgtacagt gaaatttaat gctagtttaa gatatattaa      3240
     taaaatgtaa ataattaata tgtatagctt aaggcctagt tgctatagct taagtatggg      3300
     ttagaggtaa tttgcaattg ccccataacc cgagcataaa taaataaata aa              3352
//
ID   I-5_DK      repbase;    DNA;    INV; 4532 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4532
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1337-1337 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..697
FT                 /product="I-5_DK_1p"
FT                 /translation="KLYLLAHTFHAQCNAKNSLRFNHLQTFCKQDSPTCKN
FT                 CSETTHTNDNNDCIQEPKCINCKNNHTSIDKKCPVFIKEQELVAIKITEKV
FT                 DHKTARSIYYARHNPSQVTSYSQTLKNTTPLEIPTKPTTITETHENKGXAR
FT                 ITNSSEEILKDSDKKMENTTMPANRTLVTYDINDEAMDTLFDLDSEVPTTS
FT                 ARDRTLRSQTKEKSALSKTFKAKDQKSTSYNPYTTKQAQKNL"
FT   CDS           507..4376
FT                 /product="I-5_DK_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTSMMKQWIHFSISTRKSPQHQQETVHLEAKPKKNPP
FT                 YPKHLKPKIKNPPRITHILQNKHKKIFNSLMSLKILQWNIKGYANNYNQLL
FT                 LLIKTHSPHIISLQETHIQQLYSLPTPINYNILTNIASNRFGGVALLIHKS
FT                 IQHTQCNINEDVEAIAAEIKSKQKFKLYAIYISPNKAFSRNNLNNVINTNN
FT                 ELVMVTGDFNSWHQNWGSPQPNSRGKTIAKFIEQSQLTLLNDKSPTHFTTH
FT                 NTFTHVDLTFCSPSLTPLTTWNTIDDLYGSDHFPILINLFPKNPTSNPSNP
FT                 YFKIKEANWENFQKYTHNFNELYPCSNNINKEAALINKILIQSAHHTIPQT
FT                 PPNILLPRVPWWNKKLSDLHQEKKEKWRALKRQITQQTIIEYRRANARLKR
FT                 EIKTRKTEATTTFTSTIQTKTPTTKVWSNIRRFCGLNPAKQIHCITTTNET
FT                 TTDKNKIANLFARHWSDLSKDTNFDHKFITQKYTPITINHSPSTSAIEIEK
FT                 NITKMEFNMALQSLKGSTPGINRISYPMIRNSSLTTXDRIIAQFNQIYNNY
FT                 IPQSYKISLTIPVLKPNKEKIDINSYRPISLNCCIGKLLDKIISQRLWWFL
FT                 TNNRLLHPNQFGFKKGKSTSDSLLYVDHLITKALNSKKHISLVSLDFARAF
FT                 DRVEVHSIIDQLIKWKCGPKIINYIKNFMANRKLATRVGSQTSTIHPLENG
FT                 IPQGSPISVVLFIIAFNKLSNIISLHKEINFSAYADDFFLIINLDKRKNIN
FT                 YDLNALFTEIKTWGEYSGASLSPTKCQHLHICRKHNCICTITCNNANITNS
FT                 SSLKLLGLWINNKYKWNTHINALIPALSSKLNIIKCLASPRFNCNTHTLLN
FT                 VTKSILISKIDYGLHTYGQAPKTTLNELKTSFNAAIRLALGAFRTTPIHNL
FT                 LYEANISTIEQKRDHLTAKLFKSLIQAKDTPIAKYIKPNTRRKKWISTIQN
FT                 AITKCQTNGIPYQPITIHKLKPAWQLPSKSINTSIHTYNKANTPPETYQKI
FT                 FNETKTYYPNHTFIYTDGSQQSSITTYAITTETETLAYGSLPPYSSIQTAE
FT                 ILGILEAAKIILKKRGKFVICSDSLGAIEAIKNPLNNNAYPALIRSIISSH
FT                 YPKIKILWTPGHRNIKGNEMADKTAKSTLRMPLIFTPNHSSKDINKFLKHQ
FT                 LNQQTQSLLIKCNTWYQNINTNNSHTSIYSKIAQEEVTRLDQIKFTRLRLG
FT                 HTNLTHKHHLDTTTQRNCPLCHTYTPVTIEHILNLCPTIAQMKQNILKNTN
FT                 ATHYLSNPSTENIKIITKFLKETTLYHNI"
XX
SQ   Sequence 4532 BP; 1871 A; 1175 C; 521 G; 962 T; 3 other;
     gaaattgtat ttactcgccc atacattcca cgcccaatgc aatgcaaaaa atagccttcg        60
     tttcaaccac ctccaaactt tttgcaaaca agatagcccc acatgcaaaa actgttcaga       120
     aaccacacac acaaatgaca ataacgactg catacaggaa ccaaaatgta tcaattgcaa       180
     aaacaatcat acttccatag ataaaaaatg cccagtcttt attaaagaac aggaacttgt       240
     agccataaaa atcaccgaaa aagttgatca caaaaccgcc cgttccatat attatgcacg       300
     ccacaatccc agtcaagtaa cgtcatattc acagactctg aaaaacacaa caccattaga       360
     aatccctact aaaccaacaa caataaccga aacacatgag aataaaggaa wtgctaggat       420
     cacaaactct tcagaagaaa tactaaaaga ttctgacaaa aaaatggaaa atacaactat       480
     gccagcaaac cggacgctcg taacttatga catcaatgat gaagcaatgg atacactttt       540
     cgatctcgac tcggaagtcc ccacaacatc agcaagagac cgtacactta gaagccaaac       600
     caaagaaaaa tccgccctat ccaaaacatt taaagccaaa gatcaaaaat ccacctcgta       660
     taacccatat actacaaaac aagcacaaaa aaatctttaa ttcattaatg tctttaaaaa       720
     tattgcaatg gaacattaag ggatacgcaa ataattacaa ccaactacta ctactcatca       780
     aaacacactc tccacatatt atatcgcttc aagaaacaca tatacaacag ctttacagtt       840
     taccaacccc tataaattat aacatactga caaacattgc atccaacaga tttggaggag       900
     tagccctact aattcataaa tcaattcagc atacgcaatg caacattaat gaagatgtag       960
     aagcaatagc agccgaaata aaatccaaac aaaaatttaa attatatgcc atttatatct      1020
     cacccaacaa agctttttca cgcaataact taaacaacgt tataaacacc aacaatgaat      1080
     tagttatggt aacaggcgac tttaatagtt ggcaccaaaa ttggggatcc ccgcaaccga      1140
     actcaagagg aaaaacaata gccaaattta tcgaacaatc gcaacttacc ctcttaaacg      1200
     ataaatcacc aactcacttt actacgcaca ataccttcac ccacgttgat cttaccttct      1260
     gctctccttc actgactcca ctcactacct ggaacacaat cgatgatctt tacggaagcg      1320
     accactttcc aatcctaatc aacctctttc ccaaaaaccc caccagcaat ccaagcaatc      1380
     cctattttaa aattaaagaa gccaactggg aaaattttca gaaatacact cacaacttta      1440
     acgagttata cccctgctca aacaacatca acaaagaagc tgcactaatc aacaaaattc      1500
     taatacaaag cgcacatcat acaatacccc aaacaccacc aaacatcctc ttaccccgag      1560
     ttccctggtg gaacaaaaaa ctatcagacc tacaccaaga aaagaaagaa aaatggagag      1620
     cactaaaaag acaaataaca cagcaaacta taatagaata tcggagagcc aatgcgcgcc      1680
     taaaaagaga aattaagaca aggaaaacag aagcaactac aacatttaca tcaactatac      1740
     agacaaagac accaacaact aaagtttgga gtaacataag acgattttgc ggactgaacc      1800
     cagcaaagca aattcactgc atcacaacca ccaatgagac tactacggat aaaaacaaaa      1860
     tagccaacct gttcgcacga cattggtctg acctttcaaa ggacacaaac ttcgaccata      1920
     aattcataac acaaaaatac acacctataa ctataaacca ctccccatca acatcagcaa      1980
     tagaaataga aaagaacata actaaaatgg aatttaacat ggcactacaa tccctgaagg      2040
     gttcaacacc aggaattaac aggatctcat accctatgat cagaaatagc tctctaacaa      2100
     cgcangatag aataatagcc caattcaacc aaatatacaa caactacatt ccgcaatcat      2160
     acaaaatcag ccttaccata cccgtactaa aacccaacaa agaaaaaata gacataaact      2220
     cctacagacc catctctcta aactgctgca taggaaaact cctggacaag ataatctcac      2280
     agcgactatg gtggttcctt acgaataata gattattaca tccaaatcaa ttcggattta      2340
     aaaaaggaaa gtctacttca gatagtctac tgtacgttga ccaccttatc accaaagcat      2400
     tgaactcaaa aaaacatatc tcgctagtct ctctcgactt tgccagagca ttcgaccggg      2460
     ttgaagtaca ctcaataata gaccaactaa ttaaatggaa atgcggacct aaaataataa      2520
     attacattaa aaacttcatg gcgaacagaa aattagcaac ccgagtagga tcacaaacct      2580
     ctacaataca ccctttagaa aatggaatac cccaaggttc acctatctct gtcgtcctat      2640
     tcataatagc attcaacaaa ttaagcaaca ttatttctct acacaaagag ataaacttca      2700
     gtgcttacgc ggatgacttc tttctaataa taaacctaga taaacgcaaa aatataaatt      2760
     atgacctaaa cgcactcttc actgaaataa aaacctgggg cgagtactct ggtgcatctc      2820
     tctcaccaac aaaatgccaa catctgcaca tttgcagaaa acataactgc atttgcacga      2880
     tcacctgtaa caacgccaac ataacaaact cctcatcact caagttactt ggactctgga      2940
     taaacaacaa atacaaatgg aacacccaca tcaatgccct catcccagca ctttctagca      3000
     aactaaacat tataaaatgc ctggctagcc cacgatttaa ctgcaacacg cacacattgc      3060
     tcaacgtcac aaaatcaata ctcatatcaa aaatcgacta cggtctacac acatatggac      3120
     aagcaccgaa aaccactctt aacgaattaa aaacttcatt caacgcagca atccgactag      3180
     ctctgggagc attccgcacg acacccatcc acaacttact atacgaagcc aacatatcaa      3240
     caatagaaca aaaacgcgac catttaacag caaaactctt caaatctcta atacaagcta      3300
     aagatactcc tatcgccaaa tatataaaac caaacaccag acggaaaaaa tggatctcaa      3360
     caatacaaaa cgcaattaca aaatgccaaa ctaacggaat accataccag ccgataacga      3420
     ttcacaaact aaaacctgcc tggcaactac ccagcaaatc aatcaataca tcaattcaca      3480
     cttacaacaa agccaacacc cctcctgaaa cataccaaaa aatcttcaat gaaacaaaaa      3540
     catattatcc aaatcacacg tttatctaca ccgacggatc tcagcaaagc tcgattacaa      3600
     catatgcaat caccacagaa accgaaaccc tagcctacgg aagcctacca ccctactcat      3660
     caatacaaac agccgaaatc ttaggaatcc tcgaagcagc taaaataata ttaaaaaaaa      3720
     gaggcaaatt tgtaatatgc tctgactcac taggagcaat cgaagccatc aaaaacccac      3780
     tcaacaacaa cgcatatcca gcactcatcc gatcgattat ttcatcccac tacccgaaaa      3840
     tcaaaatcct atggactcca ggacacagaa acataaaagg aaatgaaatg gctgacaaaa      3900
     cagccaaatc aacattaaga atgccactta tattcacacc caaccatagc tcaaaagaca      3960
     taaacaaatt cctaaaacac caactaaacc aacaaacaca aagcctactc atcaagtgca      4020
     atacctggta ccaaaacatc aataccaaca actcacacac atcgatctac tccaagatag      4080
     cacaagaaga agtcactcgc ctcgaccaaa taaagtttac ccgtttacga ttgggccata      4140
     caaacctaac acacaaacat cacctagata caacaacaca acgaaactgc ccactttgcc      4200
     atacatacac tccagtcact atagaacaca tcctaaacct ttgccctaca atagcccaaa      4260
     tgaaacaaaa tatccttaaa aacacaaacg ccacacacta tttaagtaac ccctccacag      4320
     aaaacatcaa aataataacc aaatttctta aagaaacaac attatatcac aatatttaac      4380
     atacacttct acacaaattg taaatattgt aaataataca ccatagcccc gtatatagtc      4440
     gatggccctg gcagctcgca ctatatattt acatgttagt cttagtttta taaactattc      4500
     taacattcaa taaaataaaa waaataaaaa aa                                    4532
//
ID   I-5_DSuz    repbase;    DNA;    INV; 5240 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5240
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 613-613 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1372
FT                 /product="I-5_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MPDPPDIWRRHPPDGVFLIATRTDDDSKSLAEVSPFI
FT                 IKKTIDNTIQGEVTSCKKTKDGKLLILTKNLLQAEKLKNLFSLPSNTPYIT
FT                 IPIKITEHRSLNCTKGVIYSNDLRGIDEQIILENLRSQKVDEVEKIYKYTP
FT                 GQITQKTERNETGLIKLTFKLTNLPEHIYIGYERVQVRPHIPPPMRCITCS
FT                 RMGHTAKFCKNSAICSNCGLAAHENTDQGIICSNKSNCINCTEKKLPLTDH
FT                 HARDRNCPVFLSHKEVQAIKTLNKVDNRTAWSIYKNRHHDGSLYSSAAKAS
FT                 SSQSNQMQPPKTTITPMQRKTVSYESDEFTLPNASNFDPDEPMSSGSEIQD
FT                 ANQDHTTKRKAKILPLNISNKTKRLLKNDQNSVMTRAKLKAISSSDTNPTP
FT                 SQI"
FT   CDS           1348..5076
FT                 /product="I-5_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="YKSNTKPNLKMTLKILQWNINGYLNNYNELLILLKHL
FT                 NPKIVSLQETHITYYQNLPIPVNFEFHYTSSHSPDGGAAILIHKSIEHTII
FT                 PLQNSFDTIALEIKSFKKLNIVSSYIPPNRKFTEADLESIVPIGNSPTLFT
FT                 GDFNSWNSYWGSPTTNRRGRILGKFILNKGFIILNNGQPTHFSTHRSLTHI
FT                 DLAFCSPDLRIYCDFKISDSLQGSDHFPITIDMFPSSRRKKDNFSQRFVTK
FT                 NADWNKFETLTNILSNSIPTSTNINQEASNINKIILQSAYQSIPHTKPPRS
FT                 HHNVPWWNKKLENLKREKIKAWRTFNRDMSTNNLINYKKLNAQYRREIRSR
FT                 KADSLFELTSKITPQSKPETIWNKIRKLCGLHKATNIHAIKDNHSNNLLTC
FT                 PEQIADTFAKFWSLRSEDTQFSTSFIEEKQKLLTLNQGNTTHRTALFMEQD
FT                 INFLEFSTALNSLKGQTPGQDKINYPMIQHVANPVKMRIINFFNSILKSHI
FT                 PQTYKSSIIIPIHKPGTDKTLTESYRPISLNPCLSKTLDKIISKRLWWFAT
FT                 SNKLLNSRQLGFKKGKSAMDCLLYADALINRALNEKRHLSIISLDFAKAFE
FT                 KIGLHTIINQLSAWGCGPIITTYVSHFMSNRKIRVRANNTTSTVQPLHNGI
FT                 PQGSPLSVILFLIAFNSLSDIIDNHKNLSHTAYADDFNIFINLKRDKNVSI
FT                 NLNNLFNEINAWCQKSGAMLSVSKCKHIHICRKRACSCQVSTQDTTIKTVT
FT                 ELSLLGLHFDHRYKFKPHIKKLQKSIDKSLNIIKCLSSGKYNSHPHTLIEI
FT                 VKSLCISKIDYALSIYGTSKKSTIKPIRTLLNSALRTSLGAFCSTPTNNLY
FT                 LEANIQSIENRTEYLKAKSIHTILQAKDTPLNQIIHRISKNKNKKYRNSTI
FT                 NQCINSCQHLDIPTQAPQKTKSIKPPWLMDESLVDIQLSCAKKSTTNKHVY
FT                 LKKFLDIKDNLLKKKFSFLYTDGSKNKEIIGLAVTTEEEIVKQAVLPTYSS
FT                 VYTAEAIAILEAVRIAEKKRGKTCICSDSLSTLEAVLNCNNMSFYTTSIRD
FT                 LIIKLAPKIMLLWVPSHIGIKGNECADTAAKEATRSPLISIPNLNRTDINK
FT                 LLKTNILKNNTNLQQKASPWYQAINPEMISINEYAKNAQLCSLPRKEITKI
FT                 IRLRLGHTKLTHEYRFSQPINSQCRFCTTDAISISHILNDCTAFQTHRPSN
FT                 SNIKLSDLLINPSYENLQQILNFLKSANLLQLI"
XX
SQ   Sequence 5240 BP; 1971 A; 1365 C; 728 G; 1176 T; 0 other;
     cagttcactc tcgacagcct aagccatcgg acgtgttctt ccgcgtatca ttaaagtacc        60
     gcagcatccc aacgcataat caaaacaaac gcaaagattg cccccgctta tctacttccc       120
     gatcaacgca actaacaatt ttggcagctt taaagaagcc ttaaagtttg ttgacctcat       180
     catgcccgac cctccggaca tctggagaag gcacccgcca gacggagtat tcctaatagc       240
     gactaggaca gatgacgact ccaagtctct agctgaagtc tcaccattca tcatcaaaaa       300
     aacaatagac aacacaatcc aaggagaagt cacaagttgt aaaaaaacca aagacggaaa       360
     acttctaatt ctaaccaaaa acctattaca agccgaaaaa ctaaaaaatc tcttcagtct       420
     accttcaaat actccctaca tcactatccc aattaaaata acagaacacc gaagccttaa       480
     ttgcactaaa ggagttattt actcaaacga tctacgagga attgacgagc aaattatatt       540
     agagaacctt agatctcaaa aggttgatga agttgaaaaa atttacaaat atacccctgg       600
     ccaaataaca caaaaaactg aaagaaatga aacaggtcta attaaactaa cattcaaact       660
     aaccaatctc ccagaacata tatacattgg atacgaaaga gtccaggtcc gcccacacat       720
     tcctcctcca atgcgctgca tcacctgctc gcgaatggga cataccgcaa agttttgcaa       780
     aaattcagca atctgctcaa actgtggcct tgcagctcat gaaaacacag atcaaggtat       840
     aatatgctca aacaaatcca actgcatcaa ctgcacggag aaaaaactac cactcactga       900
     tcaccacgcc cgcgacagaa actgcccagt tttcttgtca cacaaggaag ttcaagcgat       960
     taagacctta aataaagtag acaacaggac agcctggtcc atctacaaaa accgccacca      1020
     cgatggctcc ctgtactcct ccgcagccaa agcttcctcc tctcaatcta accaaatgca      1080
     accaccaaaa actacaataa cacctatgca gcgcaaaacg gtaagctacg aatctgatga      1140
     gtttaccctc ccgaacgcgt ccaattttga cccagatgaa cccatgtcat ctggttccga      1200
     aatacaagac gccaatcagg atcacacaac aaaaagaaaa gccaaaatcc tacctctaaa      1260
     catctcaaat aaaacgaaaa gactgctgaa aaacgatcaa aactctgtca tgactagagc      1320
     aaaacttaaa gccatttcct cttctgatac aaatccaaca ccaagccaaa tctaaaaatg      1380
     actctaaaga tcctccaatg gaatataaat ggttacctta acaactacaa cgaactgcta      1440
     attctactaa agcaccttaa tcccaaaatc gtttccctcc aggagaccca catcacttac      1500
     taccaaaact tacctatccc agttaacttt gaatttcact acacatcctc gcacagtcca      1560
     gatggcggtg cagcaatttt gatacacaaa tcaatagaac acaccataat tccacttcaa      1620
     aactcattcg acaccattgc actggaaatt aagtctttca aaaaactcaa tatcgtttct      1680
     tcctacatcc caccgaacag aaaatttacc gaagcagacc tggaatcaat agtccctata      1740
     ggaaactctc caacattatt tacaggagac ttcaacagct ggaatagtta ctggggttct      1800
     cccacaacta accgtagggg acgaatacta ggcaaattca tcctgaacaa gggcttcatc      1860
     attctaaaca acggccaacc aactcacttc tcgacccata gatcactcac acacatcgac      1920
     ttagcatttt gttcacccga cctcagaatt tattgtgact tcaagatcag cgactctctc      1980
     caagggagtg accacttccc aattactatc gacatgtttc caagcagcag aagaaagaaa      2040
     gacaacttca gtcaacgctt tgtgacaaaa aacgcagatt ggaacaaatt tgaaacactc      2100
     acaaacatcc ttagtaattc catcccaacg tcaacaaata taaaccaaga agcaagtaat      2160
     ataaacaaaa ttattcttca aagtgcatac caaagtattc cgcatacaaa acctccaaga      2220
     tcgcaccaca atgtcccctg gtggaataaa aaactggaaa atttaaaaag ggaaaaaatc      2280
     aaggcctgga ggaccttcaa tagagatatg tcgacaaata atctaattaa ctacaaaaaa      2340
     ctgaacgccc aatacagaag agaaataaga tcgagaaaag cagacagcct ctttgagctc      2400
     acatccaaaa tcacgccaca atccaagccg gaaacaattt ggaacaaaat aagaaagctc      2460
     tgcggactcc acaaagccac aaatatccat gctattaaag acaaccatag taacaatctc      2520
     cttacttgcc cggaacaaat tgccgacaca tttgcaaaat tttggtctct tcgctcagag      2580
     gacacacaat tttccacaag cttcatcgaa gaaaaacaaa aattactcac actcaaccaa      2640
     ggaaacacca cacacagaac agcactattt atggaacaag atataaactt tctagaattc      2700
     tctaccgccc taaacagcct aaaaggtcaa acaccaggac aggacaaaat aaattatcca      2760
     atgatccaac acgtcgcaaa cccggtcaaa atgagaatca taaatttctt caatagcatc      2820
     ctaaagtcac acattcctca aacctacaaa tctagcataa ttatcccaat acacaaacca      2880
     ggtacggaca aaactttaac agaatcctac agacctattt ccctcaatcc ctgcttgtca      2940
     aaaacactag ataaaataat atcgaaacgg ctatggtggt ttgcaacatc caacaaacta      3000
     ctaaatagcc gacaactcgg atttaaaaaa gggaaatctg ctatggactg tctgctttac      3060
     gcagacgctc ttatcaacag agccctcaac gaaaagagac acctctcaat catatcccta      3120
     gactttgcca aagcctttga aaaaataggg ctacacacaa tcattaacca actctcggca      3180
     tggggctgtg gtccaattat aaccacctac gtgtcacatt ttatgtctaa taggaaaatc      3240
     cgagttagag ccaacaatac cacttcaacg gtacaaccat tacacaacgg cataccgcaa      3300
     ggatccccac tctcggttat actttttctt atcgcattca acagcctctc cgatattata      3360
     gacaatcaca aaaacctttc ccacacagca tacgccgatg actttaacat atttatcaat      3420
     ttaaaacgag acaaaaatgt gtcgatcaac ttgaacaatc tatttaacga aattaacgct      3480
     tggtgccaaa aatcaggagc aatgctctct gtttcaaaat gcaagcacat tcatatatgc      3540
     aggaagagag cctgctcatg ccaggtatca acacaagata cgaccatcaa aacggttacg      3600
     gaactgtcgt tattaggact acattttgac cacagatata aatttaagcc ccacattaag      3660
     aaactacaaa aatcaataga caagtcccta aacataataa aatgcttatc cagcggaaaa      3720
     tacaatagcc acccacatac cttaatcgaa atcgtaaaaa gcctatgcat ttccaagata      3780
     gattacgccc tttctatata cggcacgtca aagaaatcta ctataaaacc aatcagaacc      3840
     ctactaaatt ccgcactacg aacatcatta ggagcctttt gctctacgcc aacaaataac      3900
     ctctaccttg aagcaaacat ccaatcaata gaaaatagaa ccgaatacct aaaagcaaaa      3960
     tcaatccaca ctatccttca ggccaaagac accccgctca accaaatcat acatcggatc      4020
     tccaaaaaca aaaataaaaa atacagaaac tctaccatca accaatgcat taatagctgc      4080
     caacaccttg atatcccaac ccaagctcct cagaagacca agtcaataaa accaccctgg      4140
     cttatggacg aaagcttagt agacatacaa ttaagctgtg ccaaaaaatc gactaccaac      4200
     aaacatgttt acctaaaaaa gttcctggac atcaaagaca accttttaaa gaagaaattt      4260
     tccttcctgt ataccgatgg ctccaaaaac aaagaaataa taggtctagc agtcaccaca      4320
     gaagaagaaa ttgtcaagca agctgtccta ccaacctact cctcagtata cacagcagag      4380
     gcaatcgcaa ttctggaagc tgttagaata gccgagaaga aaagaggtaa aacctgcatt      4440
     tgctccgatt ccctgtcaac cttggaagct gtccttaatt gtaacaacat gtcattttac      4500
     actacatcga tccgggactt aatcataaaa ctcgccccaa aaatcatgtt gctatgggtc      4560
     cctagtcaca ttgggatcaa aggaaatgaa tgcgccgaca cagcagcgaa agaagcaaca      4620
     agatcacccc ttatttccat cccaaatcta aaccgcacgg acattaacaa actgttaaaa      4680
     acgaatatac ttaaaaataa tacaaaccta caacagaaag catctccttg gtaccaagcc      4740
     attaacccag agatgataag catcaacgaa tacgccaaaa acgcacaact ttgcagcttg      4800
     ccaaggaaag aaattactaa aatcatcagg cttcgactag gacacacaaa actgacacac      4860
     gaataccgat tctcccagcc aataaacagc caatgccgat tctgcaccac agacgccatc      4920
     tcgatctcac atatccttaa cgactgcacc gcatttcaaa cacatagacc tagtaactca      4980
     aatataaaac tatctgatct cttaattaac ccttcatatg aaaatcttca gcaaatcctc      5040
     aactttctca aatcagctaa cctacttcaa ctcatttaaa ttgttaatct ccttctcttc      5100
     ccattcatat gtaaatttct agttattaag taaacatgta attacaattt agtccggccg      5160
     aaagtctcag caactatggc cgattcctcc ctgtacctta agttttaaac ttttggcaac      5220
     agagtacaat aaataaataa                                                  5240
//
ID   I-5_DTa     repbase;    DNA;    INV; 5364 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.11, Created)
DT   26-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5364
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (26-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, supposed to be a recent copy.
XX
SQ   Sequence 5364 BP; 2128 A; 1461 C; 628 G; 1147 T; 0 other;
     cagtatcagt tcagacttca aagaagacag acgtactaca gagatcatct ccccaaaatc        60
     cactgtttac aacaacaaca caaacccaac gttcaaaaaa acaaacaaga ccataaagaa       120
     cactgcaaaa attacccaaa aacaacaacc cggatagaac cgttacaaaa gtgcatcggg       180
     cagcagccca agggaacgaa caatgcgacc gccggactta aacgacccat taccatggga       240
     caaaaaaaca cttttcgaac caaaatacat cataattacc cgacaagata accaaacctt       300
     cgaaaaagtc tcacccttca taattaaaaa agtaatagat ttccaatgcg gtggaatctg       360
     tgaaaaaatc aagagacggt aacctcctag taaaaaccaa aggtttagtc caagcgcaaa       420
     gactacttag actaaccaaa ttccacgatt tcctggtcaa cacatccgaa caccgaaccc       480
     tcaacacatt taaaggagta atatactcta acgaccttcg cagcattgat aaagaaatta       540
     tattaaagga actttcacta caaaaagtaa ctgaagtcga aaaaatctac catttcaaaa       600
     acaacatctt acaagaaact ggtttggtaa tcctaacatt tgcaacaaca accctaccga       660
     caacaattat gataggatat gaacgtgtta atatacggcc ccatattcct agagccttaa       720
     aatgccgaaa ctgtcaactg tccaaatact aaaatatgcc aaagcccaaa aatatgcaac       780
     aattgctcac agactcacac tccagatgac gaaaacagca ccaatcccaa gtcctgctca       840
     aactgtaaga aacaagacgc caatagccaa tacaaccact ccccaaccga caaacaatgc       900
     ccaacattta tcaagcaaaa agaaattgtt gcaataaaaa ccattgaaaa agtagacttc       960
     aaaactgcat caaaattata ctatgaacgc cacactcatc aaccaacaac atactccaac      1020
     acacttcaac aacaaccaaa acctacaaca ccagcacaac ccacaaacat cacgccatca      1080
     acctccacta acatccaaac acatgcaaat aggaaaatca ccaactatga tgacctcctt      1140
     aaagacgcaa ataaacaaga caatccacaa cacacggcct atacctcgga agaagacatg      1200
     gacacaacgg aacccaccaa ccgcaaccaa agcaaaaagc agtctaccga atctgaccgt      1260
     aagctcagat cacaaacaaa agacaagtcc aacaatctta gtaaaccact taaagctaaa      1320
     gacaaatccg aaaaaacaag tatccccaac actaacctca taagcaaact atctaaataa      1380
     tagaacccaa tactaactag aatataagta caaaaacaca tatacactca agtttacata      1440
     actctaaaac ttaaatccga tgcttaaaat tatacaatgg aatatacatg gttacagaaa      1500
     caactacata gaacttcaag tacttagtaa agcctacaac ccacagatta ttgccctcca      1560
     agaaacacat attacaaacc ttcaatccct ccccacgcca attaactata ccctgtacac      1620
     cagtaaaaac aacgacaata gttttggagg cactgccctc ctgatacaca attccatacc      1680
     tcagaacgaa atctcgataa gctcagattt cgacgtggtt ggagtttcta tacaatccaa      1740
     aaccaaattt aacataatct cagcctatat ctccccctcc aaacctttca acacaaacaa      1800
     cttggccaat gtcctggatt cccagaacgc caatacccta gcgttgggtg actttaacag      1860
     ctggcacccc tactggggtt ctccaagatc caacaaaaga ggaaggattc taaggacaaa      1920
     tccccaacac attactcaac ccataacaca tacacacaca tagacctatc tttagccaca      1980
     gccagtattg ctccagaaat atcctgggaa gtgttagacg accttcatgg cagcgaccac      2040
     tttcctatat taatctcgat gttccgcaac caatccctca caacctttac cgcaaaacaa      2100
     acatttaaac ttaaagatgc agattgggac ctctataagg aaaacatttt gtttttaaac      2160
     ttggaagcca actctagcac aaatgtcaac caagaagctg ctaatataaa aaagatacta      2220
     attcaaagcg cacacctatc cattcctcaa aacaccacct tctcccaacc ccgcaccgtt      2280
     ccctggtgga acggcaacct ctcacttctc aaaaaagaca aaatcaaaaa atggaggaca      2340
     ctcaacagag agccaaacac acataacatt atagaataca agaaatcaaa tgcaaaactg      2400
     aaaagatcca ttagagatgc aaaaaaaatc agtatacaac agtttacgtc cgacatcaac      2460
     ccatacacaa acccaaataa aacatgggca aacataaaga gattatgtgg cctataccct      2520
     caaaaaagca tccactgctt aaacaaccct actcccacaa tcgacccaac agaaattgcc      2580
     aattcttttg gccaaacctg gtcagacgaa gccggcgatc acaacttctc ctcacctttt      2640
     cgactgaaca aacaacttct tgacccaatc cctaactaca tcccgtccaa agcagcactt      2700
     gaaattgaaa aagacatagc ctttattgaa ttctgctctg cccttaatac actgaaagga      2760
     aacacaccag gtctcgaccg gatttcctac tcgatgatta aaaacttgcc taacactttc      2820
     aaaaacagaa ttatcaacct ctacaataat atactctctt cccatatccc tcaatcattc      2880
     aaactcagcc cggtactacc tattctaaaa ccacaaaaac cccaaacaga cataaaatca      2940
     tacagaccta tctctttgaa ttcatgccta gccaaaattc tcgacaaaat catagctaaa      3000
     aggttgtggt ggttcgtctt aagcaacgac ctaatccaca acagccaatt cggcttcaaa      3060
     aggggccaat ctgtactaga cagtctactt tatgtcgacc acctagcttc tagatccatt      3120
     gccctcaaaa aacacctatc tattatatcg cttgacttta ctaaggcttt tgacaaaatt      3180
     gggatacaca ctgtcataca acaactacac gattggaaag tagggactcg tattattaac      3240
     tatgttaaaa acttcatgac aaatagaaaa ataatagtaa aaatcggcac taaactctct      3300
     aatacctacc cccttaacaa tggcatcccg caaggttcgc caatctctgt cattttattc      3360
     ctaatagcct acaactccct taccaacatc atctctacat cgcatcaaat taaattctgc      3420
     gcatacgcag atgacttcca tctcctcatc caacacaaga aacgtaaaaa ccccacaaca      3480
     aacctaacaa acacctttaa ccgaattgac gagtggtgca cccactcagg gtcagtccta      3540
     tcaaaggata aatgtcagat actacacatc tgccggaaac acaactgcaa cgctaagata      3600
     caaacaggag acaccaccat accaaccaca gacaccctta aaattctagg actcacaatc      3660
     aaccacagat acaagtggaa ctcacacata tccaaattaa aaaccgagct ctctaaaccg      3720
     ctaggaatag ttaaacacct ttcttccctc aaatacaata cgaacacagc ttctctcatc      3780
     caagtcataa aatcaatcat catttctaaa atagactact gtctcccaat ttatggccac      3840
     gcacccaaat cccaacttaa caagattaaa acttccctta attccgcaat aagagccggc      3900
     ctcggagcat tccgttccac gcccataaac aaccttttaa tagaagccaa cataagcccc      3960
     atagaacaca agcgagactt tttatcaggt aaactagtta aaaacctaat acattctaaa      4020
     gatacaccac taaaaaactt taccaaatct acgaaaagaa tccatagata ccccagcaca      4080
     atcgaccgcg taatacaaac agcaaaactc gactccattc cctaccttcc aatcactaac      4140
     aataaatgta aatcattcaa catgcttaac gtcattaaag caaccaacac caccttatca      4200
     aagtacaata aaaactccac accaccaacc actttccatc aactgtttca caccatcaaa      4260
     tcttcttatc ctaaccacaa cttcgtttat accgacggat ccaaatcggg agacgtaaca      4320
     tcctacagca tcacaagcga aacagaaata ataaaactag gtctcctgcc ttactattcc      4380
     tcagtccttt cgagtgagat aatagcaatt caagaggcca ttaaaatatg catcaagatc      4440
     ccaggcaaac tcgctatatg cacagactcc ctttcatcca tctcctcgat cactaaccac      4500
     aacaaccata cacattatgc cacctcagtc agaaacctaa tcacgaaaca cttcccaaaa      4560
     atctcgctca tatgggttcc tagccacata ggacttatag gaaacgaaaa cgcagacgaa      4620
     gcagccaaaa gtgctgctaa attcccctta acgtttaccc caaacaacaa cacgaaagac      4680
     gtaacacact tcctcaaaac aaaactaaaa gataaacaaa cgatcctact caattcaacc      4740
     tccaattggt accaacaaat agcaaagcta tcaccctcaa acacccccca cataaactct      4800
     ccactgaaca ggagacaaca aataataata actagactta gactcggaca tacaaactta      4860
     actaacgccc actaccttga caatacaaaa aacaacttgt gcccactatg caccaatgca      4920
     cgcataaacg tagaacacat aatatgttct tgccccgccc tctcctcaca acgctcccaa      4980
     tacttccaca acctcaatcc tctactatat cttgcaaacc ccccaaacaa caacttcaac      5040
     aacatcataa actttgttac aaactcccac attgtaaata aaatataaaa ataaatttaa      5100
     aaaataaaca aataaataaa cacaaatata tagaagtaca tcaattaacc aaataaaata      5160
     aacaacaata ctttgtaaat taaagaaaga aaaaaaaaaa catctagtaa ttaagctaga      5220
     ctcaaagaca tgaaattgaa acatatacga accacaaaga gctgaaggcc tacagctgct      5280
     aaagctcata cccactgtta gcaagtagtt tataattagt tgctagcatt aaataaataa      5340
     ataaataaat aaataaataa ataa                                             5364
//
ID   I-5_LMi     repbase;    DNA;    INV; 5956 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5956
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3138-3138 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(648..842,839..1780)
FT                 /product="I-5_LMi_1p"
FT                 /translation="MEAYIPHFMTTKQGVIENVDVSLTVEEIQQEITCDKE
FT                 ILNVRRYTKKVSIMGQNKSCNNQFALNIHLNPRGCQTKFIYMVSDAKWNHM
FT                 SPLKFSVSIVCNSTTEAQCRGQPKCAKCSGQHLLSQCTSQNEPCCLFCQGM
FT                 HLSTDRKCPEHQRLASLRRERVYQGLTPQPPPVYEHSYARVLSSPAKGPAL
FT                 ENPPASRVPLVDGNQREDHKSHTTTRHKIISAPRPKVYYNRAYTRQSSFPN
FT                 LQQCLYSYQGPSQPIWSKAQQSSPYADSQELSSLXNITGNPNLSKTQFCPQ
FT                 ATSSIPERHDMSCNNIPSIYNSSSIIEKLLSIIIGIVEQTRVGAPIDLADV
FT                 RHMLGNIMNADICYQSHSQNGRKPLKQESWNMKHNL"
FT   CDS           join(1805..2449,2380..3810,3644..5401)
FT                 /product="I-5_LMi_2p"
FT                 /translation="MATKILQWNARSVIANREAFQRELSQNRYFAVALSET
FT                 WLKPQVNINFRDYEIVRQDRQDGYGGVALLINSAIAFQQVPLNVPSSDLQV
FT                 IAIKVKTATTELCIASVYKPPGYRVQSSTWNNLFKQLPSPFLVCGDFNAHH
FT                 QAWGCITVDANGKDLMQAIDDNSLTILNDGTPTIVSAPHQNRSAIDISLCS
FT                 GDFSFFLTNGTLNRTHWGPITFQLRLQFFFDKWYVKPDTLGSNHFPIEITI
FT                 TCHLNCTRILFPSSPWKTGQANWQLFASILEESVQHISYSLPPQIAYKMLL
FT                 DAINEAARAAIPRKKDFIVIKKPSPVWWNSTCSQAVARHRLALSTYRKLRT
FT                 LDNFLNYKRIDAQVKRILKRENKQSWINFCSALTKDTSITDLWHQINKFRN
FT                 RRSGHNPLMEAPWLEEFADRISPPSVRPRPLXRPRDCFHVDDCLVSPFTLV
FT                 ELKRAINLTTDSSPGIDNIHYAMIRNMPSNALLLLLQIYNRLWGSDDLVED
FT                 WRTQIIIPVLKRGRDSCQSSSYRPIALSSCIGKTLERLVKQRLEWWLESRN
FT                 LLATSQFGFRRGKGTIDNIALLSTDILTAFTKNEKSSALFLDIKGAYDNVN
FT                 IDILLHKLGTLGVPEQMVYGLGCMLLERKIFIKYQGKMIGPHIVSSGLPQG
FT                 AILSPLLYAVYTMDLEAAIPPSTRILQYADDVCRYSRHFLYGMLGHTLFHL
FT                 ASHKELFSVLYYMLYTPWIWKQLFLHQPEYCNTQMMFVDTHGTSYTECEAA
FT                 LSFSMSRVKNWLHIHGMEFSTDKSHLVLFSKHSSQFPDRMILDSDYYPVSS
FT                 QARFLGVIFDSRLSWVPHINYVIINCEKALNIIRSVSRVWWGSHPTHLLTL
FT                 YKTLIRSRLDYGSVAFHNGRKNILKKLDKFQFRCIRQCLGAMSSTPTNALL
FT                 IEAHEMPLHLRRQLLADKFLINRMSISTHPLHSKLESLDFHIRKTRHRATL
FT                 PALVSSRRRWGHLSTKILSTSSIPIYMHNYSVLSHEVRVHLDATSLMGSQL
FT                 KHQDLKCLLYQKWPDSLYIYTDGSKLKEGGNAGCAFLCPQINVSKMYQLPK
FT                 ETSVFSAETVAILEALKYVRSTQASKVLIDSMSVLQSLKHNKWKSKSNNLI
FT                 LEIIWLCLQCEIQGKTIEFLWIKSHCGIAYNEVVDILAKEATKSGIFIDLK
FT                 LSPSELYRLAMQNAFQEWQEDWNLSQSFRGQHYACVQPIIPRRPWFHDVRL
FT                 PRWLITTVCRMRFNHGSFPTHLHRIGITPTPFCDCTNTTEGDINHILLNCS
FT                 KWETHRQRFCINYTVCK"
XX
SQ   Sequence 5956 BP; 1814 A; 1372 C; 1136 G; 1627 T; 7 other;
     ctgagcgaaa gtcgtgttga catggacatg gttttaggcg aaccaccgga tactggtcag        60
     gtggcaggga atgcaccttc tcccaatttc tcacgaacaa accaaccaca agatcaggaa       120
     acacggagat acatcctcaa gatcccaccg tcctgcgaca tccgtgaaca acaacagact       180
     gcaaaacaac ggcacgaaca tcttccaacg tcagaggcca gaaatgcagt caagaaacca       240
     agacgggaat ccactgagct cacaacgctc aggaakcaag agatgttcct accgtatcat       300
     cgccgtaacc tcagatgtaa gtagcgcact agctccttat aaaatgttat taacactgtt       360
     gaagttagtg ctctagcttc agcttctggg ataaatgttc taaagcgtaa tgagaacttg       420
     ggcaagggaa acaaatattc agacagatga aggaccttac tatgtgtttg tagaaagctg       480
     taatgctaac attgggagat tacaccctat ggctcttggc aaactgctat accgtgaaag       540
     tgtatgaaga agatacgtaa tgcaggaaga aataaaatta aggtggaaat gcgttcaggg       600
     tcagctgcaa atagtttagt gaatctacag cttttcccga aaatcaaatg gaggcttata       660
     ttccccattt catgactacc aagcaaggag ttattgagaa tgttgatgtc tctttaactg       720
     tcgaagaaat acagcaggaa attacctgtg acaaagagat attaaacgtt aggcggtaca       780
     ctaaaaaagt cagcattatg ggtcagaaca aatcttgcaa caaccagttt gcgcttaaca       840
     tttaaatccc agaggctgcc agactaagtt tatttatatg gtgtccgatg ccaagtggaa       900
     ccatatgtcg cccctcaaat tcagtgtttc aattgtttgc aattcaacca cagaagctca       960
     gtgtcgtggt cagcctaaat gtgctaaatg ctctggccag cacttattaa gtcaatgtac      1020
     ttcacagaat gaaccgtgct gcctgttttg ccaaggaatg cacttgtcaa cagacagaaa      1080
     atgccccgaa caccaacgtc ttgcttctct caggcgagaa cgtgtttacc agggtctcac      1140
     gccccaacca ccccctgtgt atgaacactc atatgcgcgt gtattgtcgt caccagctaa      1200
     aggacctgct ttggaaaacc ctcctgcaag ccgagtacct cttgttgatg gcaaccaaag      1260
     ggaggaccat aagagtcata ccacaaccag acacaagata attagtgctc cacggccaaa      1320
     ggtgtactac aatcgggcat acacacgaca aagcagtttt cctaacctac agcaatgtct      1380
     atacagctac caaggcccaa gtcaaccgat ttggtccaag gcacagcaat ccagccccta      1440
     tgccgatagc caagagctca gctcacttas taacataaca ggcaacccaa atctatcaaa      1500
     gacacaattc tgcccacaag ctacgtctag cataccagaa cgacatgaca tgtcatgcaa      1560
     caacattccg tcaatttata actccagttc aatcattgag aaacttctca gcatcatcat      1620
     aggaattgtc gaacaaacga gagtaggagc accaattgac ctggctgatg tccggcatat      1680
     gctaggcaac ataatgaatg ctgacatttg ttatcagagt cattcacaga acggcagaaa      1740
     gcctctcaaa caagaaagtt ggaatatgaa acataacttg taacctttca aatattcaat      1800
     ctcaatggct actaagattc tccagtggaa tgctcgctct gtcatagcca atcgagaagc      1860
     ttttcagaga gaactttccc agaatagata ttttgcagtt gctttgagtg aaacatggct      1920
     caaacctcaa gttaatatta acttccgaga ctatgagata gtacgacagg atcgacaaga      1980
     tggttatggt ggggtcgctc ttttaataaa ctctgcaatc gcttttcagc aagtgccttt      2040
     aaatgtacct tcatcggacc tccaagttat agcgattaaa gtcaagactg ctactaccga      2100
     actctgcatt gcgtcggtat acaagcctcc cggttataga gtccaaagca gtacatggaa      2160
     taatttattt aaacaacttc catctccgtt cttagtctgt ggtgacttca atgctcatca      2220
     tcaagcmtgg ggatgcataa ctgtggatgc gaatgggaaa gacttgatgc aggccataga      2280
     tgataacagc ttaactattt taaatgatgg aacacctaca atagtctcag ctcctcatca      2340
     aaacagatct gccattgaca tctcactttg ttcaggtgac ttcagttttt ttttgacaaa      2400
     tggtacgtta aaccggacac attggggtcc aatcactttc caattgagat aacaatcaca      2460
     tgccatctaa actgcacgcg tatactcttt ccatcctccc catggaaaac aggacaggca      2520
     aactggcaac ttttcgcatc gatactagaa gagtctgttc aacacatcag ctattctcta      2580
     ccaccgcaaa tagcctacaa gatgcttctt gatgccatta atgaagcagc tcgtgctgcc      2640
     attcccagga agaaagattt tattgttatc aagaagccgt ctccagtttg gtggaactct      2700
     acctgctctc aggcagtggc gcgmcaccgc cttgcattaa gtacttatcg caagctacga      2760
     actctagaca atttcctgaa ttacaagaga atagatgcac aggtcaagag aatmcttaag      2820
     cgtgaaaata agcaaagctg gataaacttt tgctcggcat taactaagga tacaagcatc      2880
     acagacttat ggcaccaaat caataaattc aggaacaggc gatctggcca caatcctctg      2940
     atggaagctc cttggttaga agaattcgct gatcgaatct ctcctccttc agtacgtcct      3000
     cgacctctat kgcgcccacg agactgcttc cacgttgatg actgcttggt ctctccattt      3060
     actttagttg aattgaaacg ggcaatcaat ttgaccacgg acagctcccc aggcattgat      3120
     aacatacact acgctatgat acgcaacatg ccatccaacg cgctacttct actcttgcag      3180
     atatacaacc gactttgggg ttctgacgac ctcgtcgaag attggagaac acagataatt      3240
     atcccggtgt tgaaaagagg gagagatagc tgtcagtcat cttcataccg acccattgca      3300
     ctctcctctt gcattggaaa aactctggaa aggctagtta aacaacgact tgagtggtgg      3360
     ctggaatcac gcaatctctt ggctacttcc cagtttggat ttcgaagggg aaaaggcaca      3420
     atcgacaaca tcgctctttt gtcaacagat attctaacag cctttacgaa gaatgaaaag      3480
     tcctccgctt tgttcctaga tatcaaagga gcatatgata atgtaaacat agatattttg      3540
     ctccacaaac taggtactct aggtgtacca gaacaaatgg tatatgggct aggatgtatg      3600
     ctcttggaaa ggaagatctt catcaagtac cagggtaaaa tgattgggcc acacattgtt      3660
     tcatctggcc tcccacaagg agctattctc agtcctctac tatatgctgt atacaccatg      3720
     gatctggaag cagctattcc tccatcaacc agaatactgc aatacgcaga tgatgtttgt      3780
     cgatactcac ggcacttctt atacggaatg tgaagctgca ctttcgtttt ccatgtcccg      3840
     tgtcaaaaat tggctacata ttcacggcat ggaattttcg actgataagt cacaccttgt      3900
     tttattttcc aaacattcct ctcagtttcc tgacagaatg atcctagatt ctgactacta      3960
     ccctgtatca tcgcaggctc gcttcttggg cgtcatcttt gactctcggt tgtcatgggt      4020
     ccctcacatt aactatgtaa taatcaactg tgaaaaggca ttaaatatta tccgatcagt      4080
     atctcgtgtt tggtggggat ctcatcccac tcatttattg acattgtata aaaccttaat      4140
     ccgatcaaga cttgattatg gtagtgtggc attccataat gggcgcaaga atattctgaa      4200
     gaaactggat aaatttcagt ttagatgtat acgacagtgc ttaggagcta tgagctctac      4260
     ccctacaaat gcactcttaa ttgaagccca tgaaatgccc ctacatctca gaaggcagct      4320
     gctagcagac aaatttctaa ttaacaggat gtccatttct actcatccac tacattccaa      4380
     attggagagc cttgactttc atatccggaa gactcgtcat agagctactc ttcctgcctt      4440
     agtatctagc cgtcgaagat ggggtcacct atcaacaaaa atcctcagca caagctcgat      4500
     tcctatctac atgcacaatt actcagtcct ctcccacgaa gtacgtgtac atttagatgc      4560
     tacatctcta atgggcagtc agctcaaaca tcaagattta aagtgcctgc tttatcagaa      4620
     atggccagac tccttataca tatataccga tggctccaaa ttgaaagaag gaggaaacgc      4680
     aggatgtgcc ttcctctgcc cacaaataaa tgtctcgaaa atgtaccaac tgccgaagga      4740
     aacttcagtw ttttctgcag aaactgtagc tatcctggaa gccttaaaat atgtccgctc      4800
     tactcaggcc tccaaggtcc tgattgattc tatgtcggtt ttacaatctc tgaagcataa      4860
     caagtggaaa tcaaaatcta ataacctgat attggaaatc atttggttat gccttcagtg      4920
     tgaaatccaa gggaagacga tagaattctt gtggatcaaa tctcactgcg gcatcgctta      4980
     caatgaagtg gtcgatattc ttgctaaaga agccacaaaa tccggaatct tcatcgacct      5040
     taaactttcc ccttctgaat tatatcgcct ggccatgcag aatgcttttc aagaatggca      5100
     agaagattgg aatctatctc agtccttcag gggacaacat tatgcctgtg ttcagcctat      5160
     aattccacga agaccttggt ttcatgacgt tcgcttaccg cgatggctga taactactgt      5220
     atgccgtatg cgattcaacc atggaagttt tccgacacac ctccatcgta ttggaatcac      5280
     tccaacccca ttctgtgact gtacaaacac tacagaaggt gacatcaatc atatactctt      5340
     gaactgctca aaatgggaga cgcacagaca gcgtttttgc atcaactaca ccgtttgcaa      5400
     gtagagcttc ctacgagtgc caccattcta ctctctttga gtaatccggc atttactaca      5460
     cagcttttta aattcttaca agctgccaag atatctgtgt agtgataaaa ttgtacgtta      5520
     tccatcattt tatgatatta caatttacct taattgtata aatatttcga acgggctctg      5580
     agcaatttta tgtctagtgt ttctattcgc ttcattccct gccatctggt ggcacaagaa      5640
     caattgtttg tataaaacta ccttgtaaca tttgcacgca taatggacac atttgttaaa      5700
     ttaattatat gtattccttt tatgtttgtg acttcacaat ttttcagtca ctaatatatt      5760
     atattgtaca tacatagttc tcctataaaa atgacaacca gttgtaaaat aatttacttg      5820
     taagtgtaat gatgatcaaa atgcatttac ggttaattat gttactccat tacaagaatg      5880
     tactgaatgt gaaatatatg tattaagctg gctaattggc cgtcagctgc ccaaggccaa      5940
     ataaaataaa taataa                                                      5956
//
ID   I-5_RPr     repbase;    DNA;    INV; 5568 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5568
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3463-3463 (2015).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1511
FT                 /product="I-5_RPr_1p"
FT                 /translation="MPTKSAKKVVNVAGKRKGTESGSVPTTRSMLRQPDVK
FT                 VAMELTEVSTNQEANKVSDEQIYTKANKSTNGYTNMAYQSTDLGPFYVIVE
FT                 STNKDKKGLSRVHPMSVGKLLYEKHIDIAKSIDGIKKLGVNRMRVEMNNGV
FT                 AANRLVSSAILKEKGFRVYIPRYLLQRRGVIRDVDTDLTEEEIKEVMRGPL
FT                 GAEYQLIEIRRLKRKVIDRDTKETKFVPTRSVLFSVRGQQLPQYVYIHYVR
FT                 CEVHNYVQNVIQCKQCLRFGHFKDQCKGNVRCGKCGENHEASQCKDNTPKC
FT                 VNCGSASHLATNVNMCPQYKKEKTLKQLMGEKNISYLDARRLLSSNSFAAL
FT                 AEKQAPTLDSLKEFPLLNKLVGNDNRPFASTISYKRKTKRNRFEVSPNFDK
FT                 KLINDLLIQPGTSKSTPGGLIPQNPYRPSEVMKTAKSLQQDPHLDILYEAV
FT                 YSILKSINGIELKIPDDKLRLLIKDKVISLNEAM"
FT   CDS           1615..5280
FT                 /product="I-5_RPr_2p"
FT                 /translation="MNKIKILQWNARSAVSNKGSLEICLGDEKINVAILSE
FT                 TWFKPKSIIKFTHFNIVRNDRMDGKGGTAILIKNDIPFKEITNLYKINKLM
FT                 TVGVKIPFFKDELSVISIYNNPENKITYREWNSLFQSISPPFVVAGDFNVH
FT                 SQAFGSSYTESKGRYLLEAIQDNNLVYLNDGAPTLLNNLKQKNNSALDITI
FT                 CTAQIASKFSWSVMDDTMGSNHFPIIIETNEKCLECICRQNFRTWNLKKAD
FT                 WPTFQNRLDEAISSVEDYDSFINVLNIVNGKAIPKLNPRVTSRSKCWWDEK
FT                 CKASVASRKDAFRKYKLNPNYDNYIEYKKQTAKTKLIIKESKTKHWRNFCE
FT                 NLNKNTPIRLIWKKIKSLMTPPNSYIPIVKGDWSNDFINKLAPPFTQNKIE
FT                 LMGNNNDKHTLLKPFTINEFKRAIKNHTNTAPGMDQIHYAMIFHLPLAAKY
FT                 RLLQLYNEMWSKGEYPQQWKNYLISPILKRNKNRDQCESYRPISLSSCVMK
FT                 TFERMVKNRLEWWLESKGLLPNSQCGFRKGRSVQDSQTELVTDIQLGFTTN
FT                 KITLALFLDFTAAYDSVQIPILAKKLEKFKLPGKFIRNIIELISNRQIFLK
FT                 INNLLEGPQLTQIGLPQGSILSPILYSMYVADIETVLVENVKMLQYADDVC
FT                 IYTTQKTSEDCKKALEEVMVNLKSWTLLNGLSLSEPKSVLCPFTRKRRLGL
FT                 SGEMVLANWKFPCQMSAKFLGLTMDKVLNWKKHIETVELKIEKYFNTLRAF
FT                 SHRKWGADPEVSLMFYRATIRAVLDYGCFLYGQACKYVMRPLHVLQNKCIR
FT                 LCLGFLNSTPVDVMYAEAGELPLAYRIEVLSDRYVLKKLATNRIIYNKISQ
FT                 LNTEVLTHKYWTKKKGPIYTESFIRISTFRDKVYSNNKLDVYNLKYEHLLS
FT                 ELSVNTSFDLIKVPEKMRTAAFEDYISSHYPGSYRLFTDGSKINNKVGSAV
FT                 YDPVRNYFTIIKLEDEASIYTAELIAILTALKYIYSLSEKKYTIISDSQSA
FT                 LCKLSHIHNQSAGMNHIIAEIVETIAIFKEKGVCINFLWVRGHCGIKENEI
FT                 VDTLAKEATNSGEMANYKLPHTDIKGIIAKAALQKWQTDYNNGDKGRFYKT
FT                 MADQLPRQPWFKGTVTNKWVVTTISRLRANHAVCGSYLHRINKRSSPLCVD
FT                 CNEEEDFKHVIMICPRYVVERKRMFDDIYRYLDAPFRYEDIIFSTNIYVLK
FT                 SIAELAMKYECI"
XX
SQ   Sequence 5568 BP; 2027 A; 943 C; 1151 G; 1447 T; 0 other;
     gttactgtgg aaacactagc aactataaca aagcgttttt tgaaaattca aaaatattaa        60
     taaaaatctc aaatatgcct actaagtcag ccaagaaggt ggtgaacgtg gctggaaagc       120
     gtaaagggac ggagagtgga tcggtcccta ccactagaag catgttgcgc caaccggatg       180
     tgaaggtagc tatggaactg actgaggtaa gcaccaacca agaagcaaac aaggtaagtg       240
     atgaacaaat ttacaccaag gcgaacaaaa gtacaaatgg atacacaaat atggcatatc       300
     aaagtacgga tttaggaccc ttttatgtta tagtggaaag cactaacaag gacaaaaagg       360
     ggctttcgag ggtgcaccca atgtcagttg ggaaactatt atacgaaaaa cacatagaca       420
     ttgccaaaag tatcgacgga attaaaaagc tcggcgtaaa tagaatgaga gttgagatga       480
     acaatggggt agcggccaac agattagtga gttccgcaat tctaaaggaa aaggggttcc       540
     gagtatacat acccagatat ttattgcaga gaaggggagt aattagggat gtagacacgg       600
     atctgacaga agaggagata aaggaggtta tgaggggccc attaggggct gaataccagc       660
     taatagaaat cagaagatta aagcgaaaag tgatagacag ggatacgaaa gaaacaaaat       720
     tcgttcccac tcggtcggtt ttgttctcgg ttaggggaca gcagttacca caatacgtgt       780
     atatacatta cgtaagatgc gaagtgcaca attacgttca aaatgttata caatgtaaac       840
     agtgtttacg atttggtcac tttaaagacc aatgtaaagg gaatgtaaga tgtgggaaat       900
     gtggggagaa tcatgaagca tctcaatgta aagataacac acctaagtgt gtgaattgcg       960
     gcagtgctag ccatttggca actaacgtga atatgtgtcc ccaatataag aaagagaaaa      1020
     ctctaaagca attaatgggc gagaagaata tctcatacct ggacgcaaga agattgctat      1080
     ccagtaactc gtttgccgcc ttagcggaaa aacaagcccc cactttagat agtctaaaag      1140
     aattcccctt actaaataaa ctcgtaggta acgataatag gccattcgcg tctaccatct      1200
     cttataagag gaaaaccaaa agaaataggt ttgaggtgtc ccctaatttc gataaaaaat      1260
     tgattaacga cctattaatt caaccgggta cgagtaaaag tacaccagga ggattaattc      1320
     ctcaaaaccc ataccgcccc tcagaggtaa tgaaaactgc gaaatccctt caacaggatc      1380
     cccatttaga tatattatat gaagcggtat actccatttt aaagagtata aatggaatag      1440
     aattaaaaat acctgacgac aaactgagat tactaatcaa agataaagtg ataagtttga      1500
     acgaggcaat gtaaatttcc aattggttac tgttattaag taacaaatac tttttaactg      1560
     tacagtgtat ataatatctc atagttttac ttagtatact ttcatttaca acacatgaat      1620
     aaaataaaaa tactacaatg gaacgcaaga tcagccgttt ccaacaaagg cagcttggaa      1680
     atctgtctag gcgatgaaaa aataaatgta gctatattaa gcgaaacttg gtttaagcca      1740
     aagtcaatta taaaatttac acattttaat atagtgagaa acgacagaat ggacggaaag      1800
     ggcggtacag cgatactaat taaaaatgat atccctttta aagaaattac caatttgtac      1860
     aaaataaata agctgatgac tgtgggcgtt aaaattccat tttttaagga tgaattgtcg      1920
     gtaatttcga tatacaacaa cccggagaat aaaataacat atcgcgaatg gaattcactc      1980
     tttcagagta tatcccctcc ctttgtggtt gctggtgact tcaatgtaca cagccaagcg      2040
     tttggctcta gttacactga gtctaagggt cgctatctat tagaagcaat acaagataac      2100
     aatttagttt atttgaatga cggagcgccc actttattga ataatttaaa acaaaaaaat      2160
     aattcggcct tagatattac gatttgcacc gcacaaattg cttcaaaatt ttcctggtcc      2220
     gtaatggatg atacaatggg ctcaaatcac tttcccatta ttatagaaac gaatgaaaaa      2280
     tgcttagaat gtatttgtcg acagaatttc cggacatgga atttaaagaa agccgattgg      2340
     ccgacgttcc aaaataggtt agatgaggct atttccagtg tagaagatta tgacagtttc      2400
     ataaatgttt taaatattgt aaatggaaaa gctataccta aattaaatcc acgggtaacc      2460
     tcgcgtagta aatgctggtg ggacgagaaa tgtaaagcca gtgtagcaag taggaaagat      2520
     gcatttagaa aatataagtt gaatcctaac tacgacaatt atatagaata taaaaaacaa      2580
     actgctaaga cgaaattaat tattaaagaa agcaaaacga aacattggag gaatttttgt      2640
     gaaaatttga acaaaaatac tccaataagg ctaatatgga aaaaaatcaa atctttaatg      2700
     accccaccaa atagttacat tccaatagtt aaaggtgact ggtccaacga ttttataaac      2760
     aaattagctc ccccttttac acaaaataaa atagaattaa tgggcaataa taatgataaa      2820
     catacgctat taaaaccgtt taccatcaat gagtttaaaa gagctatcaa aaaccacacg      2880
     aatacggccc caggaatgga tcaaatacat tacgcaatga tttttcacct tcccttagcg      2940
     gctaaataca ggctgttaca attgtataac gaaatgtgga gtaaaggtga atacccacaa      3000
     cagtggaaaa attatttaat aagtccgata ttgaagagaa ataaaaatag ggaccaatgt      3060
     gagtcatatc gaccaatttc gctgtcttct tgcgtcatga agacgttcga aaggatggtg      3120
     aaaaacaggt tggaatggtg gctggagtca aaaggtttac ttccgaatag ccaatgcggg      3180
     tttaggaaag gcagatcggt acaggatagt cagactgagc tcgttaccga cattcagttg      3240
     ggtttcacga ccaataaaat aacattagca ttgtttttag attttaccgc tgcttatgac      3300
     tcggttcaaa tacctatact agcaaaaaag ttagaaaaat ttaaattgcc gggtaaattt      3360
     attaggaata ttatcgaact aatatcaaac agacagatct tcttaaaaat aaacaacctt      3420
     ctggaaggcc cccagctgac ccagataggc ttaccgcaag gaagcatttt aagcccaatc      3480
     ctgtactcta tgtatgtagc ggatatagag acagtgttgg tcgaaaatgt taaaatgcta      3540
     caatacgccg acgacgtgtg catctacaca acacaaaaaa cttctgagga ttgcaaaaaa      3600
     gcgcttgaag aagttatggt aaacctaaaa tcctggacac ttctgaacgg gctgtcgctg      3660
     tcagaaccaa aatcagttct ctgccctttt actagaaaga ggagattggg cctctccggt      3720
     gagatggtac tggcgaactg gaaatttcca tgccaaatgt ccgcaaaatt cttagggttg      3780
     acaatggaca aagtacttaa ttggaaaaaa cacatcgaaa ccgtggaact aaaaatagaa      3840
     aagtacttca acacattacg agccttttcc cataggaagt ggggggcgga cccggaggtg      3900
     tccctaatgt tctacagggc cacaataaga gcggtactgg attacgggtg ttttctgtac      3960
     ggtcaggcct gcaagtatgt tatgcgaccc cttcacgtac tacaaaataa atgtatcaga      4020
     ttgtgtctcg gattcttgaa cagcacacct gtggacgtaa tgtacgcaga ggctggcgaa      4080
     ttaccgctcg cttatagaat agaagtactg tccgatcgat atgtcttaaa aaaattagcc      4140
     acgaaccgga taatttataa caaaataagc caattaaata ccgaagtcct cactcacaaa      4200
     tattggacaa aaaagaaagg ccccatttac acagaaagtt ttattagaat ctctaccttt      4260
     agagataagg tatattctaa taataagtta gatgtgtaca acttaaaata cgaacattta      4320
     ttgagcgaat taagtgttaa cacttccttc gacttgataa aggtaccgga aaagatgaga      4380
     accgcggcct tcgaagatta catttcttcc cattatccgg gctcatatcg tttatttaca      4440
     gatgggtcca aaatcaataa taaagtcgga agtgctgtgt atgatccggt tcggaactat      4500
     tttacgataa ttaaattaga agatgaggcg tccatctata cagcggagct aattgctatt      4560
     ttaacggctt taaaatatat ttattcgttg tcggagaaaa aatataccat tattagtgac      4620
     agccagagtg cgttgtgtaa attatcacat atacacaacc agtctgcagg aatgaatcac      4680
     attatcgcag agattgtaga aactattgcc atttttaaag agaagggagt ctgcattaat      4740
     tttttgtggg taaggggtca ttgtggtata aaagagaatg aaattgttga tacacttgca      4800
     aaggaagcca ccaatagtgg ggaaatggct aattataaat taccacacac cgatatcaag      4860
     ggtataattg caaaagcagc actacaaaaa tggcagacag attacaataa tggtgataaa      4920
     ggtagattct ataaaactat ggcagatcag ttacctagac aaccatggtt taagggaact      4980
     gtcactaata aatgggttgt tacgacaata agcaggctga gagcgaacca cgcggtgtgc      5040
     ggatcgtatc tacacaggat caacaaaagg tcctctcctc tttgcgtaga ttgcaatgag      5100
     gaggaggatt tcaaacatgt aataatgata tgtccacgtt atgtggtaga aaggaaacga      5160
     atgtttgacg atatatacag gtatttagat gcaccatttc gctacgaaga cattatattc      5220
     tccaccaaca tttatgtgct taagtcgata gcagagctag caatgaaata tgaatgtatt      5280
     tagaagctat agccgaatta gaatgaatgg aacaaaatgc ttagagaagg attacgtgat      5340
     tttaattttg gttaagcgag aaggatggca ggagcacaga gtgctgctcc atccattagc      5400
     agtagtttat gtaaatagcg gtatatagta gaatgatgaa tgtgtgaagc gaatgtattt      5460
     gtaggtaaga atggagagtg agtgatattc tagtgataag cacctagacg atgctggctg      5520
     tatggcggaa gccaatgcca aaaaaaaaaa acaaaaaaaa aaaaaaaa                   5568
//
ID   I-60_AAe    repbase;    DNA;    INV; 4482 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-60_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4482
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1331-1331 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >91%
CC   identity.
CC   Both termini are truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           934..2127
FT                 /product="I-60_AAe_1p"
FT                 /translation="MILTISGTVIPEHVDFGWTRCKTRNYYPSPMLCFRCW
FT                 TFGHTGKRCTAPQRICGRCSKVHPENQTRNPTAKETEADVTATAGSSGENQ
FT                 DISRFVCTDSTFCINCKSDDHAVSSRKCPIYLKEIDIQRIRVDNNISYPQA
FT                 RKDYEARQNASASTGTYSGVANASKDAEIETLKAAIRRMQMDSKAKDERMA
FT                 EMEAALRGPSVGERLDRVREHGTIDQLIKQVADLTATVQKLQQTVEMKDQI
FT                 ISKLMAERKSAPVLEAEIPREAFSITDTQDEIPASQESIATTDPKLAAKIQ
FT                 EWIGRNTLSSVKNVILPNDTTKTENKKDQGRKKRNKKSNEDVTSTDESMSS
FT                 VVSQTSRRTTETSTSMPNKRNHDGSDSSNDPNNSPNLRRNKKVPKQEEVKR
FT                 GKKK"
FT   CDS           3455..4267
FT                 /product="I-60_AAe_2p"
FT                 /note="endonuclease."
FT                 /translation="MNNTLGRQYKWYVKTGVNVYQSVAIGVSNDIPVTVLD
FT                 IETDLPIIGINISWPFPVSIVSIYLPNGKIPNLKKSLGRVLEQIPGPMILL
FT                 GDVNAHHKAWGSRHSTARGSILVGLANKHDLTILNDGSPTFSRGNSETSID
FT                 VSLISACITNRLLWSTELDLHGCDHTPILLTLDGSAAPETTRRPRWLFDQA
FT                 DWTTFQKMTEAKIETSPPESLQDLTELICSTAAQTIPKSSPNPGRRALHWW
FT                 NEETRKAVKLRRKALRRVQKLQKKSSRKSP"
XX
SQ   Sequence 4482 BP; 1297 A; 1148 C; 1067 G; 950 T; 20 other;
     agccaaagca gtctctcggc tgactagtgc tccccatcgg ggctgatacg gtgccggatt        60
     gttcgagtcc tctctcggaa gatttttcgg gcttcacaga ggggcccacg gtgtggtttg       120
     tttgagtgag aaacacgtgg tgatcaacag attcaaattc ttgtgcttgg aaagagagaa       180
     aggaaactgc cgagtgagta gtgccgaggt ggacccagtg gtctccaatt tcggagacgg       240
     accacgtagt gaccttgtga ttttgtgaaa gggggaaagt gcaataaccg aaaaactagt       300
     gcgtagtcat cgattgtctg ttagtgaact tgtcgtgggt ttcgcagaga cgacaaaacc       360
     gcgccgataa acagattaag tgtagtggta aaatcgctgc tctgccagca tggagctggc       420
     gagcggtcag ctcttccgcc caggggaccc ggggggccca ggcggtggac aaaaaactgg       480
     tatgaactgg agacaaggtg agtacatggg accaacactc ccatcgtata tggaccggga       540
     tggaactgca ggttctctgc agtacttaaa aatgcaagcc acatccggat cgatgcctca       600
     ggatccgttc ctgctgcgca tctcggttga aaagcatatt ggagctcgga tcgagggtgc       660
     cttcaaggag aaccgtggcg tttcgtatgt tctcaaggta cgaagtgtgg ctcagttcaa       720
     caagttgctc cgcatggaaa aactttgcga tggaacacct gtatccatca ctgagcaccc       780
     gcaactaatc agaggcagtg tgtggtttcc aatcctgacg tagtgggtct tgacgatgat       840
     tacctgaaga tccaactcgc cactcaaggg gttaaggacc tccgccgaat ccgacgccga       900
     ctgccggatg gatcgttcgt gaacacgccg acaatgatat taacgattag tggtacggtt       960
     attccggagc atgttgactt cggctggaca cggtgtaaga ccaggaatta ctacccatcg      1020
     ccgatgttat gcttccgttg ctggaccttc ggtcataccg gcaagcgatg cactgcaccg      1080
     caacgtattt gcggtagatg cagcaaagtg cacccagaaa atcagaccag aaaccccacc      1140
     gcaaaagaga ctgaagccga cgtaactgcc acagctggtt cctctggtga aaatcaggat      1200
     ataagcaggt ttgtctgtac agattcgacc ttttgtatta actgcaaatc cgatgaccac      1260
     gccgtttcaa gccggaagtg tcccatctat ttgaaggaga ttgatattca gcgaataagg      1320
     gttgacaaca acatctccta tccccaggca agaaaagatt atgaagcccg ccaaaacgcc      1380
     agtgccagta ccggaaccta ttctggggta gccaatgcga gcaaggacgc agaaattgag      1440
     accctgaaag cagctatccg ccgaatgcag atggactcta aggcgaaaga tgaaagaatg      1500
     gcagaaatgg aggctgctct tcgaggccca agcgttggtg aacgcctcga tagagtccgg      1560
     gaacatggca caatcgacca gctcatcaag caggtagctg atttgactgc tactgtccag      1620
     aagttgcagc aaactgtaga aatgaaagac cagataatct ccaaacttat ggctgaacga      1680
     aaaagcgcac ctgttctcga agcggaaatt cctcgagaag ctttttcgat cacagatacc      1740
     caggacgaaa tacctgcatc ccaggaatcg atagctacta ctgatccgaa attggcagca      1800
     aagatacagg agtggattgg ccggaatacc ctcagcagtg tgaaaaacgt catactaccg      1860
     aacgacacaa caaaaactga gaacaaaaag gaccaaggac gaaaaaagcg aaacaaaaaa      1920
     tccaatgaag acgttacatc aaccgacgag agcatgtctt cagttgtctc tcaaacatca      1980
     cgtcgaacta ctgaaactag cacttccatg cccaataaac gaaaccacga tggatcagac      2040
     tccagcaacg atccgaataa ctctcccaat ctgcgccgga acaaaaaggt tcccaagcag      2100
     gaggaagtca aaagaggtaa gaagaagtaa gttcaccgaa acagctcagt ccctccattg      2160
     aacggcccta cacagacggt ttacatttca aacaccattt tcacttccct ttaccccctg      2220
     gaagatgaag taaacgtgga gtggactgag caaacaatca aaaaaacaga gaaagcctcg      2280
     ggtagccggg gccccgaagt gcggacgtta cacccccacc ggaactagcg gaaacccccc      2340
     gacacccgaa tgtaaatggg acgcaaaagg gccaaaaaac ccgttcccca ccatccccag      2400
     tctcggatca gaacagccag ggccccgtcg gtgcggaagc caaggccgta ccggaaccgc      2460
     cggacaacct ctggcattct gattcaactg gaagagggac gcacaagggt gtaaaaacct      2520
     gttcccctac gcacaacgag ggagtcaagg ccacggatca aaacatttgg acttctacgc      2580
     ccaaatcaaa tacgcgctga aggacggtac gttggagtca agcttcctac tagaagaaat      2640
     ccgccacgca actgccgcat gacaaccgag tacatagccg agtcggaaac cgccggaagc      2700
     gaatcttctg agttcgtttc ctgcacttgg gcggccagag gcwtatgatt ccgagctata      2760
     cgacgccctt cacaagactc gatacgagck gtcggtcgat atcgtcgcag gtagttctgg      2820
     aaccacacac gagtcggcgt cagctcatca aggggtacat ccggcccaaa agtgttccga      2880
     tccgaawgat gcgacgccca caaatagcgg taagtccgat tttaatcatt gtctgcctga      2940
     aatcagcctg taactscasc gtcgaacaag ctccgccatt aggcgggtsg cacktcgctc      3000
     acmtcccact sgtatgacac tgtctcgtca gtcttgccmt tccgaaacac gcccccaaac      3060
     gaascacatg gttccacgag tcaccaacga aatagaaagg ttaatggctt gaatctcaak      3120
     gcatgcaatk tacttttctk tatttatmga ttccacacgg attcccccaa ctcaacattt      3180
     ttggcgttct aacgatacat ccgagccatc aaatggtggc actttacgcg tctatcgctt      3240
     tcggagamct gtctsgttcg kaatactctt cccttgtccg gaaaatcaac gcggcgtatt      3300
     tcccgaaacc gaaaacactc tggcakcacg atatcgtggg tcataaacgk atttttccac      3360
     aacctaccgg acttggagat gttagtttct acccgtgcgg caccggccag tagtactcgc      3420
     cctgcaagag gtacataggg tcgacccagc ttttatgaac aacaccctgg gccgacagta      3480
     taaatggtac gtaaaaacgg gtgtcaacgt ttaccaatcg gttgccattg gagtgtcgaa      3540
     cgatatccca gtaacggtac tggatatcga aacggaccta cccatcattg gaataaatat      3600
     ttcatggcct tttccggtct ccatcgtatc tatatatctc ccgaatggaa aaatcccaaa      3660
     tcttaaaaaa agcttaggtc gagtgctgga gcaaattcct ggtcccatga tcttgcttgg      3720
     agatgtaaac gcccatcaca aggcttgggg aagccgccat agtaccgctc gtgggtccat      3780
     ccttgttggt ttagccaaca agcatgacct aactattctc aacgatggtt ctcctacctt      3840
     ctcacgtggg aatagcgaaa catctattga cgtctctctc atttcggctt gtataaccaa      3900
     tcgccttctg tggtctacgg aattagatct tcatggctgc gatcatactc caatattgtt      3960
     aacattggat ggctctgccg ctccggaaac aacccgtcgc cccagatggc tatttgacca      4020
     agctgactgg acgaccttcc aaaaaatgac cgaagcaaaa atagaaactt ctcctccgga      4080
     atctcttcaa gacttaaccg aactaatatg ctccactgct gctcagacca ttccaaaatc      4140
     gagcccaaac ccaggtcgtc gcgcattaca ctggtggaac gaagaaactc gtaaagccgt      4200
     aaagctgcga cgaaaagctt tgagaagggt tcagaaactt caaaaaaaat cttccagaaa      4260
     gtcaccctga tcgtgctaag gctcaagaat cataccaaaa tgcgagaaac gagtgtcgac      4320
     aaatcataag aggcgcaaag gaagcatcct ggactgaatt ccttaacgga atcaatgagg      4380
     agcaatcgtc gacggaactg tggaggcgaa tcaactgtct tcaaggaaaa agacgagcac      4440
     aaggaattgc cctcaaggta aatggatcct tgacacgtga tc                         4482
//
ID   I-61_AAe    repbase;    DNA;    INV; 6446 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-61_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6446
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1332-1332 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..1831
FT                 /product="I-61_AAe_1p"
FT                 /translation="MLSGTNPFPIWDTGPANRRNGEFTGPLFPEWGDPDGN
FT                 LGQMVMLRMEAVEGTLPPAPILLRKSVESYLGAKVEGAYPEARGTSYVLKL
FT                 RNTAHVEKLKRMSQLANGFPIRIVEHPILNVSKCVISCSESCNYSDKELLE
FT                 ELQPQGVKEIRRITKSHGETRINTPTIILTIQGTTVPQYVHIGWIRCRTRL
FT                 FYPSPMLCYCCWEFGHTRARCTQLNNPTCGLCSEKHVIDKDNPCTAAAFCK
FT                 RCNTIDHPLSSRKCPTYTKEEEIQHLRVDMGVSYPAAKRQYDLNHSSKSMA
FT                 SVVAAGNDQRYAELSSKLDNVLKDMKTKDNKIEALITEVRNKDAQIEKLQA
FT                 ALKATPQDRLNLVKEHGTIQDLVDKIRSLESALARKDREIATIRDIYIPKR
FT                 TADNLSTDRSTKKQTTKNQESNSTKSSNKGTKKKVDKTDSFESLNKRTKNR
FT                 PSPSATPERTDPAPESPSHTVHMDFSSGDEPMLNASGYISDT"
FT   CDS           1907..6202
FT                 /product="I-61_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MLPHRSRIEAINRSIDLETSLVSTHTPTTSTTNSIFN
FT                 LASIYDSQLSTPSTSPAELPSSRGPVSAEVMTTPELADNPRHSVAAGRGTD
FT                 KGGNSYPPEDNAGLKTSKKPASNPVKKQSWKRCSTTPSASGRYPQRRALPE
FT                 SARTNAALYDLIQFKHTRTPFPTAGRSSSPLHESQHVNQEESSEAPSLIRT
FT                 PRLPEAGTRLSIAESSILTTNSPTRLPRDNSSRLTTKAPLAIQWNMNGFYN
FT                 NIGDLELLIRDQQPIILAIQEPHRISTDGLNRSLRGQYKWTLKCNENVYHS
FT                 AAIGILSSVPHSSIPLDTDLPIVGVRLDYPFPLTVISGYLPNGNVPNLETQ
FT                 LMDILKSLDTPSLILWDTNGHHTEWGSPSSNARGSLIMRIAESLDLVVLND
FT                 GAVTFTRGDTQSTVDISLASVNIINRLSWTAGEDPLGSDHHPITIRFDEQP
FT                 VAITRRPRWKYDQANWSQFQETLDTTVADMNPNNIDDFLNAVHHAASSTIP
FT                 RTKGNSGRKSLPWWSPDVKKIIKERRKTLRAAKRLPKDHPNKDHADEVYRK
FT                 KRNECRQLIREAKRKSWEDFLEGINANQTSSDLWNRVNALSGKRRATGMTL
FT                 QVAGGLTRDPHLIANKLADYFESLSSLGQYDNNFIRRNHVSINSIQNIAIP
FT                 EDTAVPLPINSPFRLEELNFALRRSKGKSAGPDELGYPMFQNLSINSKATF
FT                 LELLNKTWAENTLPKSWTHSLVVPIPKVGKVTKSPSDFRPISLTCCASKIL
FT                 ERMVNRRLSRFLEDNQLLDHRQHAFRPGHGTGTYFTGLGDVLQDAMNKELH
FT                 VDIASLDLAKAYNRAWTPKAINQLSEWGLSGHILHFLKNFLSDRTFQVIIG
FT                 NHSSSTRKEETGVPQGSVIAVTIFLVLMNSVFDSLPKEIYIFVYADDIVLL
FT                 VVGRTLKFIRRKLQAAVTAVARWALHSGFKLSAEKSVISHICRYRHRMLSS
FT                 PVKTNGSPIPMKKTVVILGIRLDRELRFEDHLRDTKKNCQTRLNILRTLSK
FT                 PHRSSNRGTLLKVSKAIVNSRLLYGIELFCLAEDSLILSQLGPTYNQSIRI
FT                 ISSLLPSTPADAACVELGVLPFRYQMVETLCCRTIGYLEKTTGDHEVFLLR
FT                 EANRALANLAHLELPPVEQVHWVGARRWDAANLHVDLSIANRFRAGDNSIA
FT                 MRSHVTELLARKYYTHQLRYTDGSKTRGRTGFGVTDTDSSHFFQLPNQCSV
FT                 FSAEAAAILLAITTPASKPICVISDSASVLSTINSPTTQHPWIQAIQKDCP
FT                 ARTVFLWVPGHCGIQGNVEADHLAAIGRTGRMFTRLTPGADLKHWLKSTIR
FT                 VAWAQEWANVRQPFIRKIKGEITQWTDTTNRHDQLILSRLRVGHTHATHNM
FT                 GSTGPFRRICSTCNITMTVEHLLVNCPFYQGIRDRYDISNNIRDILANDPA
FT                 RETALISFIKDGGLHRAI"
XX
SQ   Sequence 6446 BP; 1894 A; 1699 C; 1342 G; 1511 T; 0 other;
     cagtagacag ctaactatag cagcgaacgg tcgcgttgaa accgttctcg tatatcgctt        60
     gattattcgt cgcgttggtg gtaataaatt acctctcgtc ggtttatctt cgctccattt       120
     tgagccagtc ctaaatagtg tctgcttgag tagttttgat agcatttaga gcgtaatatc       180
     aaatattaat tgtgctgtag cctcggatca agcttttgat ttcagagcgc tgtgtggaaa       240
     tcaaacaata gagctgattg ccattgtctg cagctaagca aaaataccgc ctagtgagtg       300
     gcatctcgtg ctgtgaaact tgttttctct ttcgagctgg tgaacaataa gtggtctacc       360
     agttcccgac atgctgtcgg ggactaaccc tttccccatc tgggatacgg gtccagctaa       420
     tcgtcggaat ggagaattca caggacccct cttccctgaa tggggagatc cggatggtaa       480
     cctcggtcaa atggtaatgc taaggatgga agccgtggaa ggtactcttc ccccagcacc       540
     tatccttctc aggaagtcag tagaaagcta cttgggagcg aaggtggagg gagcttatcc       600
     tgaagcgaga ggcacttcgt atgtcttgaa gctaaggaat actgctcatg tggagaaatt       660
     gaaaagaatg tctcagcttg cgaacggatt cccgattaga atcgtggagc acccaatcct       720
     caacgtatcc aagtgcgtca ttagctgcag tgagtcgtgt aactactcgg acaaggaact       780
     actcgaggaa ctgcaaccac aaggcgtgaa ggaaatacgc aggatcacca aatctcacgg       840
     cgaaacacgc atcaatacac ccaccatcat tttgaccatc caaggcacca ccgtacccca       900
     atatgtgcac atcggttgga tccgctgtcg aacccgccta ttctaccctt caccaatgct       960
     ttgctactgc tgctgggaat ttgggcacac ccgcgctcgt tgcactcagc ttaacaaccc      1020
     gacttgtggc ctctgctccg aaaaacatgt gatcgacaaa gacaatccgt gtactgctgc      1080
     tgctttctgc aaacgatgca acactatcga ccacccactc tcaagccgca agtgccccac      1140
     ttatacgaaa gaagaggaga ttcaacactt gcgagtggat atgggagttt cgtatccagc      1200
     agccaaacgt caatacgatt tgaatcacag ctcaaaatca atggcttccg tcgtagccgc      1260
     tggcaacgat caacgttacg ctgagctctc gtctaaactg gacaacgtgc taaaggacat      1320
     gaaaaccaag gataacaaaa tcgaagcgct gattacagaa gtccgaaata aagatgccca      1380
     aattgaaaaa ctccaagcag cgcttaaggc cacaccgcaa gacagactaa atctggtgaa      1440
     ggaacatggt acgattcagg acctagtcga caagattcgt tctcttgagt ctgctcttgc      1500
     cagaaaagac agggaaattg ccacgattcg agacatatac atcccaaaaa gaaccgccga      1560
     taatctttct accgaccgct ccaccaagaa gcaaactaca aaaaaccaag agtcgaattc      1620
     caccaaaagc tctaacaaag gtacgaagaa gaaagtggat aaaactgaca gttttgaatc      1680
     tctcaataaa cgcaccaaaa atcgcccttc gccatcagcc actcctgaac gtacagatcc      1740
     tgctccggag tccccctcgc acactgtcca catggatttc tcttcagggg acgaaccgat      1800
     gctaaacgca tccggttaca tatccgacac gtaaatgttt cggcagtaag actagttttc      1860
     cctcgattct tcataagatc aacagaacca ccaacgacaa acttcaatgt tgccccatcg      1920
     aagcagaatt gaagccatca accgtagtat agatctggaa actagtctag tatctactca      1980
     cacaccaaca acatcaacca ccaacagcat ctttaacttg gcatccatct acgacagtca      2040
     actttccacc ccttcaactt ccccggcgga gctaccgagc agtcgaggcc ccgtcagtgc      2100
     ggaagtcatg accacaccgg aactggcgga caacccccga cactccgtag cggccggaag      2160
     agggacggac aagggaggaa actcctatcc ccctgaggac aacgcgggac tcaagacttc      2220
     aaaaaagccg gcatccaatc ctgttaagaa acaatcctgg aaacgctgta gtactactcc      2280
     atcggcatct ggccgatatc cacaaagaag agccttgcct gaaagtgcta gaaccaatgc      2340
     agcattatac gacttaatac aattcaagca tacgagaact ccttttccaa cagcgggacg      2400
     ttctagctcg cctctccacg aatcacaaca tgtcaaccaa gaagaatcgt ccgaagcacc      2460
     aagtctcatc aggactccac gtttacctga agctggtact cgcctatcta tcgcggaatc      2520
     atcaatcctg acaacaaatt ctcctactcg actacctcga gacaactcaa gcaggcttac      2580
     taccaaagct ccgctggcca tccaatggaa catgaatggc ttttacaaca acatcgggga      2640
     cctcgaatta cttatccgtg atcagcaacc aattatcctt gccattcaag aaccccacag      2700
     gatcagcacc gatggactaa accgctcttt gagggggcaa tataagtgga cccttaaatg      2760
     taacgaaaac gtctatcact cggctgctat cggtattctg tcatctgtcc cccactcttc      2820
     tatcccattg gataccgatt taccaatagt aggcgtgaga cttgattacc ccttccccct      2880
     gacagttatc tcgggatatc tgcctaatgg aaacgtaccg aatctcgaaa ctcaactcat      2940
     ggatatatta aaaagcttgg atacaccaag cctgatccta tgggacacta atggtcatca      3000
     cacagaatgg ggtagccctt cttccaacgc tcgtggttcg cttatcatga gaattgcaga      3060
     atcgcttgat ctggtagttc ttaacgacgg agctgtaacc tttactagag gggatacaca      3120
     atctactgtt gatatcagct tagctagtgt gaatataatc aaccgacttt cctggacagc      3180
     cggagaagac cctttgggta gtgaccacca tccgattaca atccgctttg acgaacaacc      3240
     agtggcgatt acacgccgcc cccgctggaa gtatgaccag gcaaattggt cccaattcca      3300
     agaaacctta gacacgacag tagcagatat gaatccgaac aacatcgatg attttctgaa      3360
     tgctgttcac cacgcggcat catctaccat ccctcgaaca aaagggaaca gtggccgaaa      3420
     atcgcttccg tggtggtctc cagatgtaaa aaaaataata aaagaaagaa gaaaaactct      3480
     ccgtgcagct aaacgattgc ccaaagacca cccgaataaa gaccacgctg atgaagtcta      3540
     ccgcaagaaa cgaaacgaat gtcgtcaact tatccgagaa gcaaagcgga agtcctggga      3600
     agacttcttg gaggggatca atgcaaacca aacatcctct gacctgtgga accgagtcaa      3660
     cgcgttgagt ggcaaacgaa gagcaacagg catgacccta caagtagcgg gaggccttac      3720
     ccgcgatccg catttaatag ccaacaagct agcagattac ttcgaatcac tctcttcatt      3780
     gggtcaatac gacaacaact tcattcggcg caatcacgta tccattaata gcattcaaaa      3840
     catagctatt ccagaagaca ctgctgttcc tctccctatt aactccccat tccgcctgga      3900
     agaactgaac ttcgctctac gtcgcagtaa gggcaagtca gctggcccag atgagctcgg      3960
     ttacccgatg tttcaaaacc tatccattaa ctcaaaagct acttttcttg agcttctaaa      4020
     caaaacgtgg gccgagaaca ctcttcccaa gagttggacc catagcctgg tggtcccaat      4080
     ccccaaggta ggaaaagtta ctaaatcacc aagtgatttc cggccgatct cactcacctg      4140
     ctgtgctagt aaaattcttg agcgaatggt aaaccgccga ctgagtcgat tcttggagga      4200
     taaccagctt cttgaccatc gtcaacatgc gtttcgacca ggtcacggaa caggaacgta      4260
     cttcactggg ctgggagatg ttctccagga tgccatgaac aaagagcttc atgtcgatat      4320
     cgcttcctta gatctggcaa aagcgtataa tcgcgcctgg actccaaaag ccatcaatca      4380
     attgtccgaa tggggcttaa gtggccacat tctccatttc ctgaaaaact ttttaagcga      4440
     caggacattc caagtgatca ttggaaacca ctcctcttca actcggaagg aagaaaccgg      4500
     ggtcccacaa ggatccgtaa ttgcagtgac tatctttcta gttttgatga atagcgtttt      4560
     tgattctctc ccaaaagaga tatacatatt tgtatatgcg gacgatattg tcttgctcgt      4620
     tgtgggtcgt actcttaagt ttatccgacg gaaactccag gctgcagtca ctgcagttgc      4680
     tagatgggct ctccactctg gttttaagct gtccgctgaa aaaagtgtaa tatcccacat      4740
     ctgccgctat cgtcatcgaa tgctatcatc gcctgtgaag acaaacgggt ctccaatccc      4800
     aatgaagaaa actgttgtta tacttggaat acgattggac cgcgagctga gatttgagga      4860
     ccacttgcgc gataccaaaa agaattgcca aaccagactg aacattctcc gcactctttc      4920
     aaaaccacac cgtagtagta atcgaggaac cctccttaaa gtatctaaag caatcgtaaa      4980
     tagtcgacta ctttacggta ttgagctgtt ctgcctagca gaagattccc tcattttatc      5040
     tcaacttggc cctacgtaca accaaagcat aagaattatt tctagtttgc tcccatccac      5100
     accagcagat gcagcttgcg tagaactagg tgtgcttcct tttcggtacc aaatggtgga      5160
     gactttgtgc tgccgaacaa tcggctacct cgaaaaaacc acgggagacc acgaggtctt      5220
     tctcctcaga gaggcgaata gagccctcgc aaatctggcc catttagaac tccccccggt      5280
     tgagcaggtc cactgggttg gagccagaag gtgggacgct gcaaacctac atgttgatct      5340
     ttccatcgcg aatcgcttcc gtgcaggaga taactccatt gctatgcgct cacatgtcac      5400
     cgaattgtta gctagaaaat attatactca ccaactccgc tacactgatg gttccaagac      5460
     cagggggaga accggttttg gtgttaccga tacggacagc agccactttt tccagctccc      5520
     caatcagtgc tcagtgtttt ctgctgaggc tgctgcaata ctgttggcca ttacaacacc      5580
     agcatccaaa ccaatttgcg taatctccga ttcagcaagc gtcctatcta cgatcaactc      5640
     tccaacaacc cagcacccat ggattcaagc tattcagaag gactgtcccg caagaaccgt      5700
     tttcctttgg gtacccggcc actgtggtat ccaaggcaat gtagaagcag atcacctcgc      5760
     tgccatagga cgaaccggtc gcatgtttac caggttgaca ccaggtgcgg atctgaaaca      5820
     ctggttaaag tctacaatcc gcgtagcatg ggctcaagaa tgggccaatg tgagacaacc      5880
     cttcatacgc aaaattaagg gagaaattac acaatggacc gacactacca atcgccacga      5940
     tcaactgata ctttctcgcc tacgagttgg acatactcac gctacgcaca atatgggatc      6000
     cacggggcct tttcgcagaa tatgttcaac atgcaacata accatgacgg tggaacacct      6060
     actagtcaac tgtccattct accagggaat acgagatcgc tatgatatat caaacaacat      6120
     aagagacatc cttgcgaacg acccagccag agaaacagca ctaatttcat tcatcaaaga      6180
     tggcgggtta caccgggcca tttgagcccc aaaacacaga accaacataa aatatccaca      6240
     ccattcatca tacggatcaa ctaagctacg attttgtgtt aatgtgttgt atatcgattt      6300
     tataagaata tcctttgtaa ttgtaactaa actatgaaac tgtatgatag gggggcccct      6360
     cattgcgaag ccctctccct ttttcttcca gagacgaacc agccacgatc tgagctgaaa      6420
     gtctctttaa taaagataat aataat                                           6446
//
ID   I-62_AAe    repbase;    DNA;    INV; 5304 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-62_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5304
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1333-1333 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..764
FT                 /product="I-62_AAe_1p"
FT                 /translation="MGISYPAAKRQHDLRHNPQSMASVVAAGNDQRFAELS
FT                 AKVDNLVQEVKRKDDRVETLLTEIRNKDAHIERLEAALKLTPQERLTMVKE
FT                 HGTIKDMVQKIRSLESELARKEKEVAVMRDVYVPKKALNTTANNTAKTPAA
FT                 VSEPCANKTNPTSKKTSTKKKVVKTDDYGLLNKRSKNCVSPIDTSEPMNTS
FT                 INYSPESGDIEISSGDEPMLNASGYISDS"
FT   CDS           834..5072
FT                 /product="I-62_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MSSHPTTIDPKHQPSAERTSKPASKLNNSANRKPQLF
FT                 KNHQTSPVEPPSSPGPVSAVVYSTPVLADNPGHSLVTGRGTDKGETSYTPK
FT                 DNAEIVAIATTEAHQETQERTVGAPKVHKPSSTHSITYDSLVAERTPRTTL
FT                 PELARSNAAIYDLLQLNQQNIPSPTAGTSGLTASSKRNLRRKSPVKVTTQS
FT                 TPVRQSQPTTVRHSQNASTKTVLAIQWNMNGYYNNLADLEILVRDQEPLVL
FT                 AIQEPHKISINSLNHSLRRQYTWSLKCNQNFYHSTAIGVLVSVPHSPLQFN
FT                 TDLPLVGVKLGYPWPLTVISGYLPNGNIPDLKQKLVDFFQALDTPILVLWD
FT                 ANGHHPDWGSTTANARGSLILEIAQMFDLVVLNDGAPTFIRGERSSTVDIS
FT                 LASSSIVDRLLWAPGEDPMGSDHYPISISINEQPQAISRRPRWKYNEADWS
FT                 QFQESITPKLCDPVPDNIEEFLNIISDSASLSIPRTSTSPGRRSLPWWSPN
FT                 IKKVIKERRKTLRAAKRLPNDHPAKHDAMETYRSKRNQCRQQIREAKKKSW
FT                 EDFLEGINENQTSADLWNRVNALNGKRRSTGMTLQLPNGPTRDPLIIANAL
FT                 ADYFASLSSLDLYDANFLRRNQVSADSIIKMAIPDDTAGLPINAPFRFDEL
FT                 TFALRRCKGKSAGPDDLGYPMFRNLTPEAKAIFLELLNKIWIGNTLPKAWT
FT                 HSLVVPIPKNGRAATSPSDFRPISLTCCASKILERMVNRRLNRFLEDNQLL
FT                 DHRQHAFRAGHGTGTYFAGLGDVLQDAMNANLHADIASLDLAKAYNRAWTP
FT                 RAIHQLAEWGLGGNILHFIKNFLSGRTFEVVIGNNHSTVRAEETGVPQGSV
FT                 IAVTIFLVLMNSVFDTLPKEIYVFVYADDIVLIVIGRTLKFIRRKLQAAVS
FT                 AVSRWATQAGFILSAEKSIVSHICRSHHRVLSTPVTANGCSIPHKTSTVVL
FT                 GVRLDRKLQFGEHLNETKRNCQTRLNLLRTLSKPHRSCNRDTLLRIARAIV
FT                 NSRIFYGIELFGLAGDALITCLAPVYNQAIRIIAGLLPSTPADAACIELGV
FT                 LPFRYQVTQTLCCRTISYLENTTGDHEVFLLREGNRSLSSLVHQELPPVEQ
FT                 VHWVGARRWDATDFRVDLSILKHFRAGDNSSAMQSHVVELLADKYRNYHLF
FT                 YTDGSKTVNRTGFGVATNDTSYFYRLPDQCSIFSAEAAAILFAITRPTERP
FT                 ICVISDSASVLTTINSPSTRHPWIQAIQMKSSPETVFLWVPGHCGIRGNVE
FT                 ADRLAATGRLGRMLTNLIPGADLKTWCKSTIRLEWAREWIGLRHLFIRKIK
FT                 GETTRWIDSAERHNQQILSRLRVGHTHLTHNMGNRGPFHKVCPACNTKMTV
FT                 EHLLIDCPCYQAARLRHAIPGSIRDALANDPTNEAAILSFLKDAGLHRNI"
XX
SQ   Sequence 5304 BP; 1614 A; 1411 C; 1086 G; 1190 T; 3 other;
     catccggtgc cttttgcaag agatgcaatt ctgcaaacca ctcgatagct agccgaaaat        60
     gccccgccta catcaaggaa gaagaaattc aacacatacg tgtcgacatg ggaatttcat       120
     acccagcagc aaaaagacaa cacgacttac ggcacaaccc acagtcaatg gcatccgtgg       180
     tggcggctgg caatgatcag cgtttcgctg agctctccgc caaagtggat aacctcgtac       240
     aggaagttaa gcgtaaggac gacagagtag aaactctact gaccgaaatc agaaacaaag       300
     atgcccacat tgaaaggcta gaagcagcac tgaaactaac tcctcaagaa agactgacca       360
     tggtaaagga acacgggaca ataaaggata tggtccaaaa gatacgctcc ctggaatctg       420
     agctggccag aaaagagaaa gaagttgctg taatgagaga cgtctacgtt cccaagaaag       480
     cccttaatac cacagcgaac aataccgcaa aaacccctgc ggcagtttct gaaccctgtg       540
     ctaataaaac caacccaacg agcaaaaaaa ccagcactaa aaagaaagtc gttaaaactg       600
     atgactatgg actactaaac aagcgctcga aaaactgtgt ctcgccaata gatacttcag       660
     aacctatgaa tacgtcgatc aactattcgc cggaaagcgg tgatatcgaa atctcctctg       720
     gagatgagcc gatgctgaat gcatccggtt acatatcaga ttcttaaaga aaaccacctt       780
     tccagtcctc tcttgtttct ccgcccaaca aataacgaac attaaccagt ccaatgtctt       840
     cgcatccaac cactatcgat cctaaacatc aacccagtgc agagaggact agcaaacccg       900
     catccaagct aaataattca gcaaatcgca aaccacagct cttcaagaat catcaaacat       960
     ccccggtgga accaccgagt agtccaggcc ccgtcagtgc ggtcgtctac tccaccccgg      1020
     tactggcgga caaccctggg cactctttgg tgaccggaag agggacggac aagggagaaa      1080
     cctcctatac ccctaaggac aacgcggaaa tcgtagcaat agcaacaaca gaagcccatc      1140
     aagagactca agaacgtacc gttggtgcgc cgaaagtgca taaaccgtcg tcaacacaca      1200
     gcataacata tgactctctg gtggcagaac ggactccaag gactaccctg ccagaactag      1260
     caagatccaa cgcagcaata tacgatttac ttcagctcaa ccaacagaac atcccctctc      1320
     ccacagcagg cacttccggt ctaacagctt cttcaaaaag aaatcttcga agaaagtctc      1380
     cagtcaaagt tactacccag tcgacaccag tcaggcaatc acaacccact acggttcgtc      1440
     acagtcaaaa cgcttccaca aaaaccgtac tggctatcca gtggaacatg aacggttact      1500
     acaacaacct agcggaccta gaaattttag tcagagacca agagccgttg gtcctagcaa      1560
     tccaagaacc gcataagatt agcatcaaca gtctaaacca ctccttaaga aggcaatata      1620
     catggagtct taaatgcaac caaaatttct atcactcaac cgcgatagga gttctagtgt      1680
     ctgtacctca ctcgccactt caattcaaca ccgacctccc tttagtggga gtaaaactag      1740
     gctatccgtg gcctttaact gttatatcgg gatatctccc caacggtaat attccagatt      1800
     taaaacaaaa actcgttgat tttttccagg cactagatac accgatactg gttctgtggg      1860
     acgccaacgg gcaccacccc gactggggaa gtaccactgc taatgccaga ggttcattga      1920
     tcttggagat tgctcaaatg tttgatttag tcgttctcaa cgacggagcc ccaaccttta      1980
     ttaggggcga acgaagctct acagttgaca tcagcctagc tagttcaagt atagtcgatc      2040
     gactcctttg ggcaccaggc gaagacccaa tgggtagtga ccactacccg atctcaatca      2100
     gcatcaacga acaaccccaa gcaatatcac gtcgtccccg atggaagtac aatgaagcag      2160
     actggtcaca atttcaggag tcaataactc cgaaactctg tgatcctgta ccggataata      2220
     ttgaggaatt tctgaacatt atcagtgact cggcctcact ctcaattcct cgaacatcca      2280
     caagtccagg tcggagatct ctcccctggt ggtccccaaa tataaaaaag gtcataaaag      2340
     agaggagaaa aacactaaga gctgcgaaac gscttcctaa tgaccaccct gccaaacatg      2400
     acgccatgga gacttatcgc tcaaaaagga atcaatgtcg tcaacaaatc cgagaagcaa      2460
     aaaagaagag ctgggaagat tttctagaag gaataaacga aaaccaaacc tcagctgatc      2520
     tgtggaatcg tgtaaatgct ctaaatggca aacggagatc cacgggaatg accctgcagt      2580
     tgcccaatgg tcctactcga gatccactca ttatagctaa tgctctagca gattactttg      2640
     cgtcactttc atcacttgat ctctacgacg ctaattttct tcgamggaac caagtatctg      2700
     ccgacagcat aatcaagatg gcaatcccag atgataccgc cggtttgccg attaatgctc      2760
     ccttccggtt cgatgaactg actttcgcgc tacgtcgttg taagggtaaa tcagcgggtc      2820
     cagacgatct tggctacccg atgtttcgaa acctaacacc cgaagcaaaa gccatctttc      2880
     ttgaactttt aaacaaaatc tggatcggaa acacgctacc caaagcatgg acccacagcc      2940
     tagttgtacc cataccaaaa aatggacgtg ctgcaacatc acctagtgat ttcagaccta      3000
     tatctctgac atgctgcgcc agcaaaatcc tagaacgtat ggtgaaccgg aggctgaatc      3060
     gttttttgga agacaaccaa ctactcgacc atcggcaaca tgcctttcgt gccggacatg      3120
     ggacmggcac ttattttgct ggtttaggag atgtgcttca ggatgcgatg aacgcaaacc      3180
     ttcacgctga tatcgcctcc ttggatctgg ccaaggccta taatcgtgcc tggacaccca      3240
     gagccattca tcagttggct gaatggggtt tggggggaaa tatcctccac tttataaaaa      3300
     atttcttaag cggcagaaca tttgaagtag tcatcggtaa taaccactcc acagttcgag      3360
     cagaagagac aggtgtcccc caaggctccg ttatagcggt caccattttc ttagttctca      3420
     tgaatagtgt ctttgacacg ctacctaaag aaatctacgt atttgtctac gcagatgaca      3480
     ttgtcttgat agtcatcggc cgcaccttga aattcataag gcgaaaactc caggcagccg      3540
     tttctgcagt ttcaaggtgg gctactcaag ctggcttcat actgtcggca gaaaaaagca      3600
     tcgtctctca tatctgccga tcgcatcacc gagtgttatc aactccagta acagcaaacg      3660
     gttgttcaat accacataaa acatcaaccg tagtactggg tgtgcgactg gatcgaaaac      3720
     tacaatttgg tgagcacctc aacgagacca aaagaaactg ccaaacacga ttaaacctcc      3780
     ttcgaacgct atctaagcca caccgcagtt gtaacagaga tactcttctc agaattgcaa      3840
     gggccattgt caatagccgc atcttctacg gaattgaact gtttggtcta gcaggggatg      3900
     ctctaatcac atgccttgct ccggtataca accaagctat tcgcataatt gctggcctgc      3960
     ttccgtcaac cccagctgat gcggcctgta ttgaacttgg tgttcttccc ttccgctatc      4020
     aggttacaca aactctatgc tgcaggacta taagctacct ggaaaatacc actggagatc      4080
     atgaggtctt tcttctcagg gaggggaata gatccctcag cagcctggtc catcaggaac      4140
     tccccccggt tgagcaggtc cactgggttg gagccagaag atgggacgcc accgacttcc      4200
     gagtagactt gtctatcttg aaacacttcc gagccggaga caactcttcc gctatgcaat      4260
     cccatgtcgt cgaactactt gccgacaagt accgcaacta tcatctattc tacacagacg      4320
     gatcaaaaac tgtaaataga actggtttcg gcgttgccac aaacgacaca agttacttct      4380
     atcggctgcc cgaccaatgc tctatctttt cggctgaagc agctgcaata ctctttgcaa      4440
     tcacaaggcc aacagaacgc cccatctgcg taatttctga ctctgcaagt gtgcttacca      4500
     ccatcaactc tccatcaaca cgccatcctt ggattcaagc catccagatg aagtcctctc      4560
     cggaaactgt cttcctatgg gtaccgggcc actgtggtat ccggggcaat gtggaagcag      4620
     accgccttgc cgccacagga cgacttggcc gcatgctcac caatttgatt ccgggtgcag      4680
     atttgaaaac ttggtgtaaa tccactattc gcttggagtg ggcccgagag tggataggcc      4740
     tgagacatct atttataaga aaaattaaag gggaaactac aagatggatc gattctgccg      4800
     aacgacacaa ccagcaaatt ctgtcccgac ttcgagttgg ccacacacat ctaacacaca      4860
     acatgggaaa ccgaggacct ttccacaaag tatgcccggc atgcaacacg aaaatgacgg      4920
     tagaacacct cttaatcgac tgtccctgct accaagctgc ccgacttcgt catgccatcc      4980
     caggcagtat aagagacgct ttagctaatg atccgaccaa cgaagccgca atattatcgt      5040
     tcctcaaaga tgccggacta caccgaaaca tttaacatcc tacatcaaac aacaaccacc      5100
     gagatatgac gaccctgctt ttcaccctaa attgacttgg attacctatt cgttttttga      5160
     atgaacattg atgtatttat gtgtatcgaa gttaattaaa gcaaaatgta caggggggcc      5220
     tctcactacg aagccctctc catattctct accggagacg aaccagccaa cggctgaaag      5280
     tctcgataat aaagataata ataa                                             5304
//
ID   I-63_AAe    repbase;    DNA;    INV; 5600 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-63_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5600
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1334-1334 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..1899
FT                 /product="I-63_AAe_1p"
FT                 /translation="MKKIVDGMQIRSRNDSNTSQPQSDTXISKKKHKRQNP
FT                 PTFYDQSRQSAGPSRMSPPPKNPHQTLEARSEPDTGRIAPWQXLNPWATPT
FT                 AEIXKSIWILTSSNPMDQENQQNLSPTVNPSHPSAKQLLNTNLPKPRFEMW
FT                 ESEVPHSLLNEAQLRVRSVQDAIPLPVDGETPAAAGTHALNCHQYXANETA
FT                 TXQYSQDQQTDFPPNNPPQHFKTPSQTQCFQYSSKKMHLINSSEYNNCPSQ
FT                 IDHRQSQTTNTQANNLCDTSPRCGEGEKKAISPLPDEGVNAWGGRNTSANT
FT                 VRSXTPSWGSTENTFKNLPTAARTSSTIYDQLYNRNQQASSSKRLLSDRIK
FT                 TAPFRDSTAHPPETTQRPKRMSDDAICNDQSGAGSVNPTQVLALALTIDER
FT                 IPIAAAGARXLASSQASTINYSSETVSSAPSIPPSDLHLELESNNSTSDIG
FT                 AGSENPKQDLAPALTTDDYIPVAAAGARKLAPQASRQYSQCEQSSSASSIL
FT                 SPVSVPRRTR"
FT   CDS           1927..5505
FT                 /product="I-63_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MERSHVWSNYNEFRKLVDDRLPITTCLQEMMTSQTTN
FT                 LXRNRYHWIICNRSESLGNGIAGLGIRSDIPFQVIPHDSDLHVCIARVGKP
FT                 WNITVXSIYVPHTLNNQEFIGKLDDLLLTLEPPFLLCGDFNASHEVWGSRK
FT                 SNQRGRLLLEWAVDHNLLALNDGSPTHYHNTSGSFTAIDISFVSNSLASKF
FT                 IWHCEDDLHGSDHFPIHIRSNNMLPTIRSRKRWIYKDADWTKFEHAVAQKI
FT                 PANFEASIDDLTEGIFEAALESIPRSKGVPGXKNQLWWNKEVGEKIKTRRK
FT                 ALRKLRKMKDDDPAKAAAKQEFNTAKSEARRAVNEAKSKSWTEFQSIFTSS
FT                 SSTSELWQNFRKLNGKRQLKGPGLVLDGEHTSNPAVIADHLANFFADTSAT
FT                 INYPEEFLSKKQIDEQDTIDLESTETTLLDDEFTIHELFRALEHTRGTSVG
FT                 PDEIGYPMLQRLPFHCKISLLRAINQIWRSGNIPGSWKESVIIPIPKTGGH
FT                 RKDANDFRPISLTSCVSKTMERMVNHRLITHLETQRTLHHRQFAFRRGKGT
FT                 TSYLAELDDVITSAAKKGEHCEIVTLDIKKAYDRVWHHNIMRAVVENQLGS
FT                 RMNKFVFNFLQMRTARVCFGGHLSQKVPQENGVPQGSVLSVTLFLLVMNDL
FT                 FKVVPKNVQLFLYADDIVIVGTGKRVSYLRRRLQNAVSIIEKWTMGIGFQM
FT                 SPLKSTTMHCCKVQRHKNWHLEGPKIVLDGAEIPKVKTTRILGIHFDRKCN
FT                 FNHHMKHLKADCASRLNLLKAISRMADRKTLLYIGNATITSKLTYGIEVLR
FT                 KENYKVLAPVYNDIVRIAAGALKTTSILPLVVESGCLPFEFIAVQALVKKA
FT                 CSVLEKAREQSNNLWEKANTAFHDLTDNFLPQPCKLLTTHNRPWYKKKPNI
FT                 DWTIKTKVKAGQMPQLIVSIFREHVNSRYKDHNKWYTDGSLANGLVGFGII
FT                 GPNYRSGASLPGQCSVFSAEAAAPAWATKETTGRSVIFTDSASCLQALDGG
FT                 KSGHPYIQEIEKEAEGKDVSFCWIPGHSNIPGNEEADFEANRNRLEESASR
FT                 FVPTQDIVRWSQGRIWNAHQVNWDHSTRKTTRIVKPFVGKWIDQKSRKDQI
FT                 ILTRLRLGHTWFTKHHLFEKKPAESCDNCDRTQSVHHILVGCPLYHSYRRE
FT                 INLAENLENILKNDKICEEKVLKFIRKIGLYNKI"
XX
SQ   Sequence 5600 BP; 1855 A; 1336 C; 1137 G; 1258 T; 14 other;
     ttgaagaact gctgcagcta tcagagctat ccgatggaac caaagtcact gttacgttgc        60
     atcctacgtt caataccagc cgttgtgtga tttctacgtt cagcttaata atgtctgawg       120
     agcgcatcgt tgaaaaacta gccggacaag gagtaactga agccaaacga atcctgaaga       180
     acaaggaaaa tacacctgcc atcattttga ccttcaaccg ggccgcctat ccagaaaaag       240
     taaaagttgg tcttctgagt gttccaaccc ggcctttcta cccgaatcca ctgttgtgtt       300
     accgccaaaa tagatgagct ccagaatcaa attaaacaga gagatgasag aataagaaaa       360
     attgaagcgc agaatcacaa tatgaagaaa attgtggatg gaatgcaaat taggtcaagg       420
     aacgattcaa acactagcca accgcaatca gatacggawa tcagcaagaa aaagcacaaa       480
     cgtcagaacc cacctacatt ctacgatcaa tccaggcaat cagcaggacc atcacgtatg       540
     tcacccccgc caaaaaaccc tcatcaaact ctcgaagccc gatcagaacc agatacgggt       600
     cgaatagcac cctggcaaat sttgaacccg tgggcaacgc cgacagccga aatcmtgaaa       660
     agcatatgga tcctaacgtc tagcaaccct atggaccaag aaaatcaaca aaatttatcg       720
     cctacagtta atccaagtca tccttccgcc aaacagttat tgaacacgaa cttaccaaaa       780
     ccccggtttg agatgtggga aagtgaagta ccacactcac ttcttaatga agcgcagttg       840
     cgagtaagat ccgtccagga cgcaataccc ctacctgtcg atggtgaaac tcctgctgcg       900
     gccggtacac atgctctaaa ttgccatcaa tataawgcca acgaaactgc aacgsttcaa       960
     tacagtcaag accaacagac agatttccct ccaaacaatc ctccccaaca tttcaaaact      1020
     ccctcccaaa ctcagtgttt ccaatactca agcaagaaaa tgcacttgat caatagttca      1080
     gaatacaaca actgccccag tcaaatcgac catcggcagt cacaaacaac caacacgcaa      1140
     gccaataatc tttgcgacac ctctccgcgg tgcggggagg gagagaagaa agcaatctcc      1200
     cccctcccag atgagggagt gaacgcctgg gggggcagga atacaagtgc taatacagta      1260
     cgctcccawa caccttcctg gggttcaacc gaaaacacgt ttaagaatct tcccactgcg      1320
     gcacgtacca gctcaaccat atacgatcaa ctctacaatc gaaaccaaca agcatcaagc      1380
     agcaagcgcc tccttagcga ccgcatcaag accgcacctt tccgtgacag cacagcacac      1440
     cctcccgaaa caacacaacg accgaaacgg atgtccgacg atgcgatttg caatgaccaa      1500
     tccggagcgg ggtccgtaaa ccccacgcaa gtcctcgcac tggccctgac tatagatgaa      1560
     cgcattccta tagcggcagc tggtgcgagg agwcttgcat cctctcaggc aagtacaata      1620
     aattattcct ctgaaaccgt ttcttctgca ccgtcaatcc ctccttcaga cctacacttg      1680
     gaattggaat caaacaacag taccagcgac atcggagcgg ggtccgaaaa ccccaagcaa      1740
     gatctcgcac cagccctgac tacagatgac tacattcctg tagcggcagc tggtgcgaga      1800
     aaacttgctc ctcaggcaag tagacaatat tctcaatgcg aacaatcctc ctccgcctca      1860
     tcaattctct ctccagtctc tgtgccaaga cgcaccagat gacatcaccg aaacctttac      1920
     aattcaatgg aacgttcgca cgtttggagc aactacaacg aattccggaa acttgtagat      1980
     gaccgtttgc ccatcacgac atgccttcaa gaaatgatga cgagccaaac cacaaacctg      2040
     mtaaggaatc gttatcactg gatcatctgt aatcggtctg aaagtctggg aaatggcatt      2100
     gctggtctcg gtatccgcag tgacatccct tttcaagtca tacctcatga ttctgacttg      2160
     cacgtctgta ttgccagagt tggtaagcca tggaacatta cagtamtatc catctacgtt      2220
     ccacacacgc tcaacaatca ggaatttatc ggtaagttgg atgacctctt actaaccctt      2280
     gagccaccat tcttgctctg tggcgatttc aatgcatcac atgaagtatg gggaagcaga      2340
     aaatctaatc aacgcggtcg gctactacta gaatgggcgg tggatcataa tctactcgcc      2400
     ttgaatgatg gatcaccaac gcactaccac aacacatcgg gctcctttac tgcaatcgac      2460
     atctcttttg tttcgaactc tctcgcgtcc aaatttattt ggcactgtga ggatgacctc      2520
     catggcagcg accatttccc gattcatata cggtccaata acatgctccc aaccatccgt      2580
     tctaggaaaa gatggatata caaggacgct gactggacca aatttgaaca tgctgttgcc      2640
     caaaagattc cagctaactt cgaagcctct attgacgact taacagaggg catctttgaa      2700
     gcagccttgg agtcgattcc aaggtcaaaa ggcgtacccg gamccaaaaa tcaactgtgg      2760
     tggaacaaag aagtcggtga aaaaattaaa acgcgccgta aagctctacg gaagctcagg      2820
     aaaatgaagg atgatgaccc cgcgaaggcc gcagctaaac aagaattcaa tactgctaag      2880
     tcagaagcaa gacgggcagt aaacgaagct aagtcaaaat cttggactga gttccaaagt      2940
     attttcacga gcagctcatc cacttcagaa ctctggcaaa acttcagaaa actcaatggc      3000
     aagagacagc ttaaaggacc tggactcgtt ctagacggtg aacatactag taaccctgca      3060
     gttatagcag atcatcttgc taattttttt gcggacactt cagctactat aaactatcct      3120
     gaagaattct tgtcaaagaa acaaattgat gaacaagaca caatcgactt ggaatctacc      3180
     gaaaccacgc ttctagatga tgaatttact attcatgaac ttttccgggc cttggaacat      3240
     acgagaggta catcagtggg accagacgag attggatacc ccatgctcca gagactcccc      3300
     ttccattgta aaatcagtct gttgagagcc attaaccaga tctggcgttc agggaatata      3360
     cctggtagtt ggaaagagag cgttataatc ccgattccaa aaactggagg acatagaaaa      3420
     gatgcgaatg atttccgtcc catctctctc acaagctgtg tttctaaaac catggagcgg      3480
     atggtgaatc atcgacttat tacccatcta gaaacccaac gaaccttgca ccatcgacag      3540
     tttgctttta gaagaggaaa aggaacaact agttacttgg cagaactcga cgatgtcata      3600
     acttcagcag cgaagaaagg agaacactgt gaaatcgtca cattggacat aaaaaaggca      3660
     tatgacaggg tgtggcacca taatattatg agagcagtag tggaaaatca gttgggcagt      3720
     cgaatgaaca agttcgtctt taacttcctg caaatgcgta cagccagagt atgcttcggt      3780
     gggcacctat cgcaaaaggt acctcaggaa aacggggtac cccaaggatc tgtgctgtca      3840
     gtaaccctct tcttgttggt gatgaacgat ctgttcaaag tagtaccaaa aaacgtccag      3900
     ctattcctat acgccgatga tatagtaata gtcggaaccg gcaaacgagt cagctacttg      3960
     cgacgaagac tccaaaatgc tgtatcaata attgaaaagt ggacaatggg gataggtttt      4020
     caaatgtcac cactcaaatc aactacgatg cattgttgca aggtacagcg tcacaaaaac      4080
     tggcatcttg agggtccgaa gatcgttctc gatggagctg aaataccaaa agtaaaaacg      4140
     actaggatat tgggtattca ttttgataga aaatgtaatt ttaaccatca tatgaaacat      4200
     cttaaagcag actgtgctag taggctaaac ttacttaaag ccatatctag gatggctgat      4260
     cgcaaaacgc tactttacat tggcaacgca actatcacct caaaattaac atacgggata      4320
     gaagtactga gaaaagagaa ctacaaagta cttgccccgg tatacaatga tattgttcgt      4380
     atagctgcgg gtgctttaaa aaccacttca atcttgccac ttgtagtaga atcaggttgc      4440
     ctaccttttg aattcatagc agttcaagca cttgtgaaga aagcctgttc tgtattggaa      4500
     aaagcacgag aacaatccaa caatctatgg gaaaaagcta atacagcttt ccacgatcta      4560
     acagacaact tcctaccaca accatgcaag ttactaacaa ctcataatcg gccttggtac      4620
     aaaaagaaac ctaacataga ttggactatt aagactaaag taaaagctgg tcaaatgcct      4680
     caattaatag tgagcatatt tcgagagcat gttaatagta gatataaaga ccacaataaa      4740
     tggtataccg atggatcact agccaacgga ctagttggat tcggaatcat aggacccaac      4800
     taccgaagcg gagcaagcct tccgggacaa tgctcagttt tttcggcaga agcagcagct      4860
     ccggcctggg caacgaaaga aactactggt agatctgtga tttttacaga ctctgckagc      4920
     tgtctacagg cacttgatgg aggcaaatca ggacatccct acattcaaga aatcgagaaa      4980
     gaagcagagg gaaaagatgt tagtttttgt tggatccctg ggcattcaaa cataccaggg      5040
     aacgaggaag ccgacttcga agcaaataga aatcgactag aagaaagtgc mtcacgtttc      5100
     gtcccgacac aagacattgt aagatggagt caaggaagaa tatggaacgc gcatcaagta      5160
     aactgggacc attcaactcg aaaaacaaca agaatagtta aacctttcgt cggtaaatgg      5220
     atcgaccaga aaagccggaa agatcaaatc atcctaacta gattgaggct cgggcacaca      5280
     tggttcacaa agcaccacct ctttgagaag aaacctgccg aatcttgtga taactgcgat      5340
     agaactcaat ctgtgcatca tattctagtc ggatgtccat tataccactc atatcgacgt      5400
     gaaattaacc ttgctgagaa tttggaaaat atccttaaaa atgataagat atgtgaagag      5460
     aaagtactaa aatttattag aaaaattgga ctgtataata agatataagt gtaaatagta      5520
     attcaatcaa cgccgtaata aacaaaaaga gacgaatgcc gtaatacggt aaagtctcta      5580
     taagcaaaaa aaaaaaaaaa                                                  5600
//
ID   I-64_AAe    repbase;    DNA;    INV; 6423 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-64_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6423
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1335-1335 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..1227
FT                 /product="I-64_AAe_1p"
FT                 /translation="MTQLIDGTSVQITEHPTLNSTRCVVSCRDVIDVTETV
FT                 LLEELKDQGVKEVRRITRRIGNERENTPSIILTCRGTNRPDHIDFGYIRCR
FT                 TRPFYPSPMQCFNCWCFGHTKLRCKSNAATCGKCSENHPIPEDKACSNGNF
FT                 CKQCQTNEHALSSRSCPFYKMENTIQRVKIDQGLSYPAARRVVEGDNGGRS
FT                 YANAVESDNNDAITELSGRIDQLTAVVDSKDKEITELRNALAARDAPPPVE
FT                 RSEIESLQAIIASQSKQIEALTNQLSTFLKMVMPAGSIVTSDIVVPATNSS
FT                 PVLEDPLALIVNEFPSPSNPKSDENSEYDSTSPDHSPNSTPRPTRASTTKP
FT                 ANKFARPGTPVPVAIKSASSPTRTPNKRSLTRIELTNLQQQKRVKHKNVSE
FT                 GTGTISKR"
FT   CDS           1304..6085
FT                 /product="I-64_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MPSHTQSRNMLQRNDAQPADLSRQETGEPEAQFQPES
FT                 PGRPMHSIQQQYLHVYLDSRGASVPEATPQPESLDRPRHSENGSDEEMHCA
FT                 SDSRGIDGPDARDPPGRSNQLQHPMDEKGTKSSRMKNPMISPGSLGPSSAD
FT                 DTSIPELVDPPWRQENVGRGTEKGWLSYTPKQDDVGISSRNEGKESTSSRK
FT                 PGRFHNYAPERKSFPDDRNVEDQFNSFNKMQLPIDALTNAARYDIHIKKAL
FT                 GCGAVVPPGPSWLQRTGKKTIETSVLITDSALFCPEYNQRTTQDILADKSN
FT                 FNEGTSLSPLAAPFFPVVETTLPITAAPSSSISEQANQPDITVGKSSASSD
FT                 SPGFPVPSSGMVFPRTDVSNTTLNNLNTSASTSQSSSSLPYPAPTLPKPVN
FT                 FLLQWNINGYYNNLANLELLTHGSSPWCLTLQEINKISIPQLNKSLGGRYQ
FT                 WTIKKGSNFRHSVGIGVLKTIPFEPLDINSDLPIIGXQLQGPICVNIINAY
FT                 LPCSTIPDFSKRMAKVFEAIPGPILFVGDTNSHHQAWGGDKSDSRGVALLS
FT                 LFEVADMVVLNNGSDTFFNGNFSSAIDVSAVSRSLLSKLLWGINSDTYGSD
FT                 HFPIQISFSTVSPETTRRPRWKYEKADWQSYDLNVRLRLQDNPPNTLPEFT
FT                 RLVYDAANASIPRTSNKPGRKALHWWSEDVRKAVKARRKALRAAKRLPADH
FT                 PERAEVLNRYRTLHVVCRKIIRNSKLASWESFLESLNGSQSSAQLWGSINA
FT                 LSGKRKTTQMSLSINGAYISDPPVVAAALGDYFSHLSSRSNYNDSFMRRVH
FT                 PCSASLPNFHVPNDPSNDLVNTAFSLNELKFALSCCSGNSAGPDNVGYPLL
FT                 KNLPATGVIKLLELINQSWLSDKYPDEWHESLVIPIPKANCCSKDPTKYRP
FT                 IALTCCLSKVMERMVNRRLKQKLESDRRLDQRQHAFRSGFGTNTYFAALGD
FT                 VLHKANAEGLHTEVISLDISKAFNCTWTPLVLQQLVDWGLSGHIVHFCKNF
FT                 LVNRFFRVAIGDTTSESYPEETGVPQGSVIAVTLFLVAMNSVFSVIPRGVH
FT                 IFVYADDILLVVSGSTRGRTRIRAQAAVSSVVKWATSVGFSLSANKSVRCH
FT                 VCKYRHQYDRTPIRVDGNPIPSKKTVKVLGIIIDRHLSFKPHFTNVKNNCQ
FT                 TRLNLLRTISRPHRSNNRGIRFRVAEAIVDSRLLYGLELTCIAYNQLVEIL
FT                 APIYNSYIRTISGLLPSTPADSACVEAGRPPFRHFITKAICTKAAVHAAKT
FT                 SGRRKMFLLEEGNKIFRRVANRNLPPVAKYHWYGDNSWHKETPKIDDEIKR
FT                 RFRAGDNSQTLRMSVLEWLQTKYSGYEHRYTDGSLSQVGVGIGIIGHSLEI
FT                 SKSLQPWYSIFSAEAVAVFIAATTVSVRPILVLTDSASVISALQSDTPQHP
FT                 WIQGIIKNSPHSTVFAWIPGHCGIPGNVAADRLAGIGHAERRYSSTAPLDD
FT                 VKRHIRKKFRDHWNVEWASSHSSYIRKIKQDTSAWDDRKSLREQRVVSRLR
FT                 TGHTRLSHNFDGADFNVICSTCNVRNTVEHFLCVCPQYEFSRQTYGLSSSI
FT                 REILSDDASATTSLICFLKDAGLFYRI"
XX
SQ   Sequence 6423 BP; 1844 A; 1693 C; 1357 G; 1528 T; 1 other;
     cagtttaaac gtctgttgtc catgacccaa ctaatcgatg gaacatccgt acaaataaca        60
     gaacatccaa ctctaaattc tacacggtgt gtagttagct gtcgtgacgt gatcgatgtc       120
     accgaaaccg ttttgttgga ggagctcaag gatcaaggcg ttaaagaggt acgcaggata       180
     acacgacgaa tcggaaatga aagggaaaat accccttcaa ttatcttgac ttgtcgagga       240
     acgaatcggc cagaccatat agatttcggg tacattcgtt gtcggacaag gcccttctac       300
     cctagcccga tgcaatgttt taattgctgg tgtttcggcc ataccaaact acgctgcaag       360
     agtaatgcgg ccacctgtgg aaaatgttca gagaatcatc ctatccctga agataaggcc       420
     tgttctaatg gtaacttctg caagcaatgt cagactaacg agcatgctct ttctagccgt       480
     tcctgtccgt tctacaaaat ggaaaatacc attcagcggg ttaaaataga ccaaggattg       540
     tcatatccag cggctcgtag agtagtagaa ggcgacaatg gcggtagatc ttacgccaac       600
     gccgttgaat ccgataacaa cgatgctatc acggaactta gtggaagaat cgaccagctg       660
     actgccgtag ttgatagcaa agataaggaa attaccgagc ttcgtaacgc cctggccgcg       720
     cgtgatgctc cgccgccagt agaaagatct gaaattgaga gtttgcaagc aatcatcgct       780
     agccaatcga agcaaatcga agcacttacc aatcaacttt ccacgttctt aaaaatggtt       840
     atgccggctg gatccattgt cacatctgac atagtagttc ctgccactaa ctcaagtcca       900
     gttttagaag atccactagc tctcattgta aatgaatttc cttcgccatc caacccgaaa       960
     tctgacgaaa actctgagta tgattcaacc tcgccggacc acagtccaaa ctcaactcca      1020
     cgtccaacaa gagcctcaac tacaaaacct gcgaataagt ttgctcgtcc gggaacaccg      1080
     gttcccgtag ctatcaaatc tgcctctagc cccactcgga ctcctaacaa acgatcgctt      1140
     acacgtattg aactgactaa tctacaacaa caaaagcgtg taaagcataa aaacgtctcg      1200
     gagggtacag gtaccatctc gaagcgttaa cgccactctc tatcgataaa tccagttttc      1260
     tccaccagcc aatcgccata aagcaaatac cgatagccaa atcatgcctt cccacactca      1320
     atcacgcaac atgctccaac gaaacgacgc acagcccgcg gatttgagtc gacaggaaac      1380
     cggcgaaccg gaagcccagt ttcaaccgga atcgccgggt agacctatgc actcaatcca      1440
     acaacaatat ctgcacgttt acctggatag tcgaggcgcc agtgtaccgg aagctacacc      1500
     ccaaccggaa tcactggacc gacctcgaca ttcggagaac ggatcagatg aagaaatgca      1560
     ttgtgcctcg gatagtcgag gcatcgacgg accggacgct agagatccac cgggacggtc      1620
     caaccaactt caacatccga tggacgaaaa aggaacaaaa agcagcagaa tgaagaaccc      1680
     gatgatatct cctggtagcc taggcccctc cagtgcggac gacacttcca taccggaact      1740
     ggtggatccc ccttggcgcc aggagaatgt cggaagaggg acggaaaagg gatggctatc      1800
     ctatacccct aagcaggacg acgtgggaat atcttcaagg aatgagggaa aagaaagcac      1860
     aagctccaga aaaccaggcc gtttccataa ctatgctcca gagaggaaat catttcctga      1920
     tgacagaaac gttgaagatc agttcaactc cttcaacaaa atgcagcttc cgattgatgc      1980
     actgacgaat gcagcgaggt atgacatcca catcaaaaaa gcactaggat gtggagctgt      2040
     cgttcctcca ggtccttcct ggttacagcg aacaggcaaa aagaccatcg aaacatcggt      2100
     actcatcact gatagcgctc tattttgccc ggaatacaat cagagaacaa cccaagacat      2160
     cctagcagac aaatcgaatt tcaatgaagg tacatctctc tcaccacttg cagcaccttt      2220
     cttcccggta gttgaaacaa ccctgcccat aacggctgca ccttcatcgt ccatttccga      2280
     gcaagcaaat cagccagata ttactgtagg taagtccagc gcctcctctg attctcctgg      2340
     attcccagta ccttcgagtg gaatggtctt cccccgtacg gatgtgtcca acactacttt      2400
     aaacaacctc aacacaagcg cctctacaag tcaatcatca agcagcctcc catatccggc      2460
     tcctacccta cccaaaccag tgaattttct tctccagtgg aatatcaacg gatattacaa      2520
     caacttagcg aatctcgaac tcctaaccca tgggtcctct ccttggtgtt tgacgctgca      2580
     ggaaatcaac aaaatctcta tcccccaact caacaaatca ctcggtggta gatatcagtg      2640
     gaccataaaa aaaggtagca acttccgaca ctcagtaggc attggtgtgc taaaaacaat      2700
     accattcgaa ccgcttgaca tcaactcaga tcttccgata attggagwgc aacttcaggg      2760
     ccccatatgt gtcaatatca tcaacgcgta tctaccatgt tcaacaatcc cagactttag      2820
     caaacgcatg gccaaggtat ttgaagccat ccccggtccg atattatttg ttggagacac      2880
     caactctcac caccaagcat ggggaggtga taaatccgat tccagagggg tcgctttact      2940
     aagcctgttt gaagtggccg acatggtggt cttaaacaac ggttccgaca ccttcttcaa      3000
     cgggaacttt tcttctgcca ttgatgtctc agcagtcagc cgttcacttc tcagcaagtt      3060
     gctctggggc ataaactccg acacctatgg aagcgaccat tttcctattc agatcagctt      3120
     ttccacagtc tctcccgaaa caaccagaag gcctaggtgg aaatacgaaa aagccgattg      3180
     gcagtcctat gatttgaatg tgaggctgcg tcttcaagac aatcccccaa atacattgcc      3240
     ggaattcacc agactagtct atgacgctgc aaatgcctcc atccctcgaa ccagcaacaa      3300
     gcccggccgt aaagcccttc actggtggtc agaagacgtc cgcaaagccg tcaaagcacg      3360
     tcgaaaagca cttcgagcag ctaaaaggct accagcagat caccctgaaa gagcagaggt      3420
     gctcaatcgt tatcgcacat tgcacgtcgt atgtagaaaa atcatcagaa actcgaagtt      3480
     ggccagttgg gagtctttct tagaaagcct gaacggatcc caatcttctg ctcaactttg      3540
     gggtagtatc aacgccctca gtggtaagag gaaaaccact caaatgtccc tttcaatcaa      3600
     cggcgcttat atatcagatc cacctgtggt agctgcagct ctcggagact atttctcgca      3660
     cctttcctcc agaagcaact ataacgattc cttcatgcga cgcgttcatc cctgctctgc      3720
     atcgctgccc aatttccacg tccccaacga tccaagcaac gatttggtta acacggcttt      3780
     ctcgctcaac gagctaaaat ttgctctcag ctgttgttct ggtaactcgg ccggcccaga      3840
     taatgtcggt tatccactat tgaagaacct tcccgcgaca ggtgttataa aacttctaga      3900
     attaattaac caatcatggc tctccgacaa atacccagat gaatggcacg aaagtttagt      3960
     aattcccatc cctaaagcca actgctgttc taaagatcca actaaatacc gtcccattgc      4020
     ccttacatgt tgtctctcca aggtgatgga aagaatggta aatcggcggc tcaaacagaa      4080
     gcttgaatcc gatagacggc ttgaccaaag gcagcatgca ttccgatcag gttttggtac      4140
     taacacgtac tttgcagcat tgggcgatgt gcttcataaa gcgaatgctg aagggctaca      4200
     cacggaagtg atatctctag atatttcaaa ggcttttaat tgtacctgga caccgctagt      4260
     ccttcaacaa cttgttgact gggggctatc agggcacata gtgcactttt gcaaaaattt      4320
     ccttgtcaat cgctttttcc gtgttgcaat cggagatact acctcggagt cttacccaga      4380
     agaaactggt gtcccccaag gatctgttat tgctgtgacc ctcttcctcg tagcgatgaa      4440
     cagtgttttc tccgttattc cccgaggtgt ccatatcttc gtgtatgctg acgatatatt      4500
     gttagtcgta tctggcagca cccgtggtcg caccaggatt cgggcccaag ctgctgttag      4560
     ttcagtcgta aaatgggcga catcagttgg tttcagcctc tccgccaaca aaagtgtacg      4620
     ctgccacgtc tgtaagtata ggcatcaata cgacagaacg ccaatccggg tggatggtaa      4680
     ccctattccc tccaagaaga cagtgaaagt actcgggatc ataattgatc gacacctgtc      4740
     ttttaagccg cattttacca acgttaagaa taactgccaa acaagattga atctacttcg      4800
     gacaatctcc cgtccacatc gttccaataa tcgtgggatt cgattccgag tagctgaagc      4860
     cattgttgat agccgtctcc tgtatggctt ggagctcacc tgcatcgcct acaaccagct      4920
     ggtagaaata ttagcgccca tatacaacag ctacattcgt actatttccg gactcctccc      4980
     gtctacgcca gccgactctg catgtgtcga ggcgggtcga ccaccttttc gccatttcat      5040
     aaccaaagca atttgcacta aggctgcagt ccatgctgca aaaacctccg ggcgccgtaa      5100
     aatgtttctc cttgaagaag gaaataagat tttccgtagg gtggccaata gaaatctccc      5160
     ccctgtggct aagtaccact ggtacggaga caatagttgg cataaagaaa caccaaaaat      5220
     cgatgacgaa atcaagcgtc gatttagagc gggtgacaac tcgcaaacgc ttcgaatgtc      5280
     agtgcttgaa tggttgcaga caaaatattc aggctacgag caccgttaca cagatggctc      5340
     cctctcccag gtaggagtag gtattggaat catcggacat tctctggaaa tcagcaaaag      5400
     tcttcaaccg tggtactcaa tcttctcggc ggaagctgtg gcggttttta ttgctgctac      5460
     tactgtcagc gtgcgaccaa ttttagtgtt aacggactcc gccagtgtca tctctgccct      5520
     tcaatctgat accccacagc acccttggat acaaggaatt attaaaaatt caccacacag      5580
     cactgtgttt gcctggatac ccggccattg cggaatccct ggaaacgttg cagcggatcg      5640
     actcgctgga atcggtcacg ccgaacggag gtatagctcc acagccccgc tggatgatgt      5700
     caaaagacac atcaggaaaa aatttaggga ccactggaat gtcgaatggg ctagctccca      5760
     ctcatcatat atccgaaaaa tcaaacaaga tacgtctgcc tgggatgatc gtaaatcctt      5820
     acgtgaacaa cgggttgtct caagattgcg tactggacac acgcgtctct ctcacaactt      5880
     cgatggagct gatttcaacg ttatctgctc aacgtgcaac gtgagaaaca ctgttgagca      5940
     cttcctatgt gtctgtcccc agtatgagtt ctcacgtcaa acatatggac tctccagcag      6000
     tatccgggaa attctaagtg acgatgcatc cgctacaacc tccctgatct gtttcctcaa      6060
     agatgctggc ctcttctata ggatctaact gtgggcagcc cgagatcatt ttcgttgtta      6120
     tagtggcctc accacaaatt aatagggcaa atcttgtgca aacactttgg atttggaaca      6180
     ttagcgcaaa taggtatact agaataacaa attataacac agtgaagtaa tccgggaacg      6240
     tcagtaactt taagagatta gctacgaaac ctttggcgag accccacggt tgggctcgaa      6300
     gacggaccct tatggttcgc cttactttcc cccgttacac gagtgccctt caggcacctc      6360
     atgtggcagt gatgaactag ccaaacgagt taaaaatcac tttaataaag aaaaaaaaaa      6420
     aaa                                                                    6423
//
ID   I-65_AAe    repbase;    DNA;    INV; 6369 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-65_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6369
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1336-1336 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           514..1869
FT                 /product="I-65_AAe_1p"
FT                 /translation="MASACGGDPGGSNGRTLPVYLDGRNEFGAVTTLLMTG
FT                 KDGKNLPIEPFIIGKSLELCAGPIELAKSENKSTRYVIQTRKPTQVEKLLK
FT                 MTQLIDGTEVSVVLHPRLNVSRCVISAYDLLEKDEAEIVQEMSSQGVIAVR
FT                 RILKANKEKTTAIILTFNRSVYPANVKIGVLNFKTRPYYPNPLLCFGCYEY
FT                 GHPRVGCTNPKRCYNCSQNHEEKDVCDHAPFCRNCGKDHRPSSRQCPIYKN
FT                 EMDIIRTRIDHNISSAEARKRVAAGNGSYAQVAAQPRLDQARMDALIAKLV
FT                 EKDKKIEQLEANHERTSHELLAKLNAFMEKMEEKENQIKELLEDLRHRDEK
FT                 IAKIEADNENMKNYIENILNRPRTSSQSSEPTPNKKTKTKRPTAQSTNEHT
FT                 SRSNMSPPPKKQPNANRSPVMTRSNSNKSKCETVTSIDMDSSTELTFLDQT
FT                 NYGPTEN"
FT   CDS           1853..6259
FT                 /product="I-65_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDRPKINNNQVLRPFNKFTVSTEQNVNTTHPHHSTAY
FT                 LEPFRFEEWESAVPLSLPLEALHTGELVRAALPQPVDNEPNCTAGSRSQPV
FT                 SSNAIITDNTSHRFTDHPFINIPNSSTSQILEYVSPVSDPFNLDCKTYPKT
FT                 HSKAYPSTQTQCSTEESLGSKNRPQLRQQSFHHGSQIPTSSRKLTTDIPIL
FT                 HGEGSVNPRQILAPALTPDVPSFWTEPAAAAGAGNLSVAQASIHQFPSQRS
FT                 NDALEIPTANNIHASTSSTPSTIRSGTQGQVFALQWNVRSVWRNYAEFRKI
FT                 VDDNNPIAICLQEMMTNKTNGLLNNNYDWAIHNRSESMGNGICGLGIRKDV
FT                 PHKFISVTSSLHVCIARISKPWDLTIISIYVSQAMSGEELSNQLSHLIDFL
FT                 EPPYVFCGDFNSMHEVWGSVQSNRRGRFLCEWAVDNSLLALNNGSPTHYQA
FT                 SSGTFSAIDVTFVSNCLATKFSWQSDDDLHGSDHFPLLIHSNNPLPTIRST
FT                 KRWLYKDADWKKYETIIAAKLPPNSMASIDIITQVIYDAAVESIPRTKGLP
FT                 AKKRQVWWNEEVGKIVKARRKALRKLRKLRDGDPTKEEAKVHYNAVNREAK
FT                 KMIDEAKKNTWSTFQEIFTAKSNTSQLWQSFNKLTGKRRNKISGLLIDGEY
FT                 TDDPTKIADHLVNFFASTCSTASYSENFLRTRRQGEETVFPVDAGNDSPLN
FT                 AKFSIQELFQALENANGTSVGIDDIGYPMLKHLPFHCKVTLLEAFNGVWES
FT                 GNIPSTWKESIIIPIPKPGENSTEPNSFRPISLISCIAKTMERMVNRRLID
FT                 HLEARNILHPKQFAFRKGKGTSTYLAQLDEIITEAANRGEHCEIVTLDIKK
FT                 AYDRVWHKHLMEAVFECNLGGRMNKFLNNFLQQRTARVRYAGALSKSTQLE
FT                 NGVPQGSVLSVSLFLLVMNTLFSETPNNIQVFLYADDIVIVATGKRVSYLR
FT                 RRLQKAVSNIENWATGIGFQLSPTKSSTMHCCKLRRHRNWHLEGGNIFLEG
FT                 TELAKPKTTRILGITFDRKCNFNQHTKQLKEDCRSRLNLLKAISRKADRKT
FT                 LLHIGNAIVTSKLFYGLEVLRLENIEQLAPTYNQIIRTASSAFRTTPILSL
FT                 MVESGCLPFEHLVLSTLIKRATAILELSPKESNHLWAKANAAFQSLTDTEL
FT                 PKLCKLVTAHTRTWNQKGPTIDWSIKTKIRAGQTPQVAREIFRQVIEEKYQ
FT                 GFEHWYTDGSLAEGKVGYGVIGPNLRVEAGLPNQCSVFTAEAKALSEAVKY
FT                 ITNQAVIFSDSASCLKALESGKSKNYYIQCIESDSKEKDIRFCWIPGHSGI
FT                 LGNENADAAARHGREHLATTTLVPRQDIITWMQKKIWRAHQQLWDQAPRNT
FT                 LRIVKQNVGKPVDRSDKKEQIVLSRLRTGHAKFTKEHIFENRSPDRCTVCN
FT                 RKLTVHHVLAACQRYNAERQEFGLSNKLDEILCNDKKAEDRTIKFIKKIGL
FT                 YDRI"
XX
SQ   Sequence 6369 BP; 2060 A; 1466 C; 1362 G; 1480 T; 1 other;
     cagttcgcgt tgagcaccca gtgtgatcgg tcgctttgcc attagatctg aagtgattga        60
     tttattattc tcaacgttat tatccgggag cgccagcgct acgcctcccg gctgttttgt       120
     ggaatcagtg ttctgagtgt agttaaatcg cgaaattatc cgcgagtatt ttcgctatct       180
     ctaccaggcg cacaaacgag cgaagtagca tatccccaat taccgggtgc gggtggtcga       240
     ccaatcggct ccatcagcgt tggagaattg tggagaaaaa ccgcaaccta ggttgccaac       300
     ataggtagtg ataggttgag tgggtgaaga agagaagcga catcaacagg ctattaggct       360
     acgaaccata tcgatcaggt gatcacaatc ttgtaaggta gggtcagatt tcctttttcc       420
     tctttatcct tccgccgcgc cggggtaggt agtgggtgac cactaccctt atctgcggtt       480
     tttgatctct acggtctgaa gtaggaacag tgcatggcct ccgcttgcgg aggtgacccc       540
     ggggggtcaa atggaagaac gttacccgta tatctggatg gacgcaacga attcggagct       600
     gtaactactc tgctgatgac gggtaaggat ggtaaaaatc ttcctatcga gccgtttatc       660
     atcggaaaga gtcttgaact atgcgccggt ccgatcgaac tcgcaaaaag cgaaaacaaa       720
     agtacacgtt atgtgataca aacgaggaag ccgacacaag ttgagaagct actgaaaatg       780
     acacaactga ttgacggcac ggaagtgtcg gtcgttcttc atccccgact caacgtaagt       840
     cgctgtgtta tctctgcgta cgatctgttg gagaaagacg aagccgaaat tgtgcaagaa       900
     atgagctcac aaggagttat cgcggttcga aggatcctga aagccaacaa ggaaaaaacg       960
     acagccatta ttctgacgtt caatcgaagt gtgtaccctg ctaatgtcaa aattggagtg      1020
     cttaatttca aaactcgccc gtactaccca aaccccctcc tttgctttgg ttgctacgaa      1080
     tatggtcatc cccgggtggg ctgtaccaac cccaaacgtt gctacaattg ctcccagaac      1140
     cacgaggaaa aagatgtctg tgaccatgct cctttctgca gaaattgtgg aaaagaccat      1200
     cggccttcta gtcgacaatg tcccatttac aagaacgaaa tggacatcat cagaaccagg      1260
     atcgatcaca acatctcgtc tgccgaagct aggaagcgtg tcgcagctgg aaacggtagc      1320
     tatgcacaag tcgcggccca accacgattg gaccaagcta ggatggatgc gctaatagca      1380
     aaactcgtag aaaaggacaa gaagatcgag caacttgaag cgaaccacga gcgcacttca      1440
     catgagttgc ttgcaaaatt gaatgcattc atggagaaaa tggaagaaaa agagaatcag      1500
     atcaaggaac tgctggagga ccttcgccac cgagatgaaa aaatagccaa aatcgaagcc      1560
     gacaacgaaa acatgaagaa ctacatcgag aacattctaa acagaccgag gacgagctca      1620
     cagagcagtg agccgacgcc caacaagaag acaaaaacca aacgaccaac agcacagagc      1680
     accaacgaac acactagccg ctcaaacatg tcacctcccc cgaaaaaaca gccgaatgca      1740
     aacagaagcc cagttatgac taggtcaaac tcaaacaaaa gcaaatgcga gacggtaacc      1800
     tcaattgaca tggactcctc aaccgagttg acttttctcg accaaaccaa ttatggaccg      1860
     accgaaaatt aacaataatc aagttctacg acctttcaat aaatttaccg tcagcaccga      1920
     gcaaaacgta aatacaaccc acccacatca cagtactgca tacctcgagc ctttccggtt      1980
     tgaagagtgg gaaagtgcag taccactctc acttcctttg gaagcgctgc atactgggga      2040
     acttgtccgg gccgctctac cccaacccgt tgacaacgaa cccaactgca cggccggttc      2100
     tcgttcccaa cctgtttcat caaatgcgat aatcaccgat aatacttcac accgctttac      2160
     agatcatcct ttcattaata ttcctaattc atcaacctct caaatcctag aatacgtttc      2220
     tcctgtttct gaccctttta accttgattg taaaacgtat cccaaaacgc actcaaaagc      2280
     ctatccgtct acgcaaactc aatgttccac tgaagagtct ctcggaagta aaaatcgacc      2340
     acagctgcga caacaaagct ttcatcatgg gagccaaata cccacatcat cgcgcaaact      2400
     gacaactgac atccctattc ttcacggaga agggtccgta aaccctaggc aaatccttgc      2460
     accggccctg accccagatg ttcccagctt ctggactgag cctgcggcgg cagccggtgc      2520
     agggaacttg tctgtagcac aggcaagtat ccatcaattt ccatcccaaa gatcaaatga      2580
     tgccctcgaa atacctacag caaacaacat ccatgcgtca acatccagca ctccatcaac      2640
     aatccgatcc ggtacccaag gccaagtttt cgctctgcag tggaatgtcc gtagcgtctg      2700
     gcggaactat gctgagtttc gtaaaatagt ggacgacaac aacccaatag caatctgtct      2760
     tcaagagatg atgactaaca aaacgaacgg tcttcttaac aacaactacg actgggctat      2820
     ccataatcga tctgagagca tgggtaatgg catctgtggc ctcggaatcc gtaaggatgt      2880
     gccacacaaa tttatcagtg tcacctccag tctacatgta tgtattgcta gaataagtaa      2940
     accatgggac ctcactatta tctcaatcta cgtatcgcaa gcaatgagtg gcgaagagtt      3000
     aagtaaccaa ctaagtcacc tcatagattt ccttgaacca ccgtatgttt tctgcggtga      3060
     ttttaattca atgcacgagg tatggggtag tgtgcaatca aacaggcgtg ggcgttttct      3120
     ttgcgaatgg gcagtcgata acagtctctt agcacttaac aacggttctc ctacacacta      3180
     ccaagcatcg tcaggaacat tttcggcaat tgatgttacc tttgtgtcaa actgtctcgc      3240
     taccaaattt tcttggcaga gcgacgacga tttacacggc agcgaccact ttccactcct      3300
     cattcattca aacaatccgc tcccgaccat ccgttcgaca aagagatggc tctacaagga      3360
     tgctgattgg aaaaaatatg aaactattat cgctgcaaaa ctcccaccaa attcaatggc      3420
     atcgattgac atcataacac aagtcattta tgatgcagct gtggaatcta ttccaagaac      3480
     aaagggtctt ccagctaaga aaagacaggt atggtggaat gaagaagtcg gtaaaattgt      3540
     taaagcgmga cgaaaagctt tgcgtaagct gcggaaatta agagacggcg atccaactaa      3600
     agaagaagcg aaagtgcatt ataatgcagt gaatcgggag gcaaaaaaga tgattgatga      3660
     agcgaagaaa aacacatggt ctacctttca agaaattttc acggcaaagt caaatacgtc      3720
     tcaactttgg cagagtttca acaagcttac gggcaaacga cgcaataaaa tctcaggact      3780
     tcttatagac ggagagtaca ccgatgaccc aacgaaaatt gccgaccatt tggtaaactt      3840
     tttcgctagt acatgctcaa cagcaagcta ttccgagaac ttccttagaa ctaggcgaca      3900
     aggggaagaa acagtcttcc ctgttgatgc agggaacgac tctccgttaa atgctaagtt      3960
     ttctatccaa gaactatttc aggcgttaga aaatgcaaat ggaacatcgg ttggtataga      4020
     tgatattgga taccctatgc tcaagcatct tcctttccat tgcaaggtaa ctttgcttga      4080
     ggcgtttaac ggtgtttggg aaagtggaaa tataccatcc acgtggaaag agagcataat      4140
     tatcccaatc ccaaaaccgg gagaaaactc cacggaacct aatagcttta gaccgatctc      4200
     cttaattagt tgcatagcca aaacgatgga gaggatggtc aatcgccgcc tgatagacca      4260
     cttagaggct agaaacatcc ttcacccaaa acaattcgct tttcgaaaag gcaaagggac      4320
     ctcaacctac ctggcccagc ttgacgagat tatcactgaa gcagcaaata gaggggagca      4380
     ttgtgagata gtcaccttgg acatcaagaa ggcttatgat agagtatggc acaaacattt      4440
     aatggaggcg gttttcgaat gcaatctggg aggaaggatg aacaaatttt taaataactt      4500
     tctgcaacaa cggacagcaa gagttcgtta cgctggagcc ttgtcaaaat caacgcaact      4560
     tgaaaatgga gttccgcaag gctccgttct ctcagtatcg ctttttcttc tggttatgaa      4620
     cacactgttt tctgaaactc caaataacat ccaggttttt ctctacgccg atgatatagt      4680
     cattgtcgcc accggtaaac gagttagtta cttacgacgt agacttcaga aggcggtttc      4740
     aaacatagaa aactgggcta cgggaatcgg gttccaatta tctccgacga agtcatcgac      4800
     catgcactgc tgtaaactta gaagacaccg aaactggcac ctcgaaggtg gcaatatttt      4860
     tctagaagga actgaacttg ccaaaccaaa gacaaccaga atacttggca tcacctttga      4920
     tcgtaaatgc aatttcaacc aacacacgaa gcaactcaag gaagattgta ggagtcgact      4980
     aaatctatta aaggccattt caagaaaagc agatcgcaag acacttttgc acattgggaa      5040
     tgccattgtg acctctaaat tattctacgg actagaggtg ctacgattgg aaaacattga      5100
     gcaattagca ccaacataca accaaatcat taggacggca tcgagcgcat ttagaaccac      5160
     tcctatactt tcattgatgg ttgaatcagg gtgtcttcct ttcgaacact tagtattgag      5220
     cactttaatc aaacgagcaa ctgcaatatt ggagctatcg ccgaaagaat cgaaccatct      5280
     ctgggcaaaa gctaacgccg cttttcaaag tctaacggat actgaacttc ccaaactttg      5340
     caaattagtg acagcacata ccagaacgtg gaaccaaaaa ggtcccacca tcgattggtc      5400
     aatcaaaaca aaaataagag ctggacaaac ccctcaggtg gcccgtgaaa tatttcgaca      5460
     agtgatagag gaaaaatacc aaggattcga gcattggtac actgatggct cgctagcaga      5520
     agggaaagtt ggatatggag taatcggacc taatctgagg gttgaagctg gactacctaa      5580
     tcagtgttca gtttttaccg cagaagctaa agcactatct gaagcggtta agtacattac      5640
     aaatcaagcc gttattttct ccgactctgc cagctgcctc aaagctctgg aatcgggaaa      5700
     gtcaaaaaat tactacattc agtgtattga aagtgactcc aaagagaaag atatccgatt      5760
     ttgctggata cctggccatt caggaatact aggcaacgaa aatgcagatg cagcagcgcg      5820
     acatggaaga gagcatctag caaccacaac tcttgtccca agacaagata tcatcacatg      5880
     gatgcaaaag aaaatctgga gagctcatca acagctgtgg gatcaagcac caagaaatac      5940
     gttgagaatc gtgaagcaaa atgtaggtaa acctgtagat agaagcgata agaaagagca      6000
     aattgtgtta agtagattaa gaacagggca cgcgaaattc actaaagaac acatttttga      6060
     aaatcgttca cctgacagat gcacagtatg taaccgtaaa ttaacagtcc atcacgtgtt      6120
     ggctgcttgt caaagatata acgctgaaag acaggagttt ggactaagta acaaattgga      6180
     tgaaatattg tgtaatgata aaaaagcaga agatagaacc attaaattca taaagaaaat      6240
     aggactgtat gataggatat aaatttaaaa tgtatttttg aatagtcttg gtaaataaat      6300
     ctatttttgc agagacgaat gccccgtcag ggcaaaatct cttaaaacca aaaaaaaaaa      6360
     aaaaaaaaa                                                              6369
//
ID   I-66_AAe    repbase;    DNA;    INV; 6707 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-66_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6707
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1337-1337 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           505..1863
FT                 /product="I-66_AAe_1p"
FT                 /translation="MASTSGGDPGGSNGRTLPVYLDGRNEFGAVTTLLMTG
FT                 KDGKNLPIEPWIIGKSLELCAGPLESAKSENKCTRYVIKTRKPAQVEKLLK
FT                 MTQLIDGTEVSIIPHPTLNVSRCVISAYDLLEKEETEIVREMSSQGVIGAR
FT                 RIMRNNKERTPALILTFNRSVYPENVKVGVLNFKTRPYYPNPLLCFGCYEY
FT                 GHPRSSCTNPRRCYNCSQDHEENEMCENAAFCRNCKKDHRPSSRQCPIYKI
FT                 ETDIIRTKIDLNISSAEARKRVAAGNGTYAQVAAQPRLDQSRMDALTAQIA
FT                 EKNKKIEKLEADLERNSREMLAKLNEVLERIEEKDNEIKDLLMHIQHRDEK
FT                 ITKIEADNKNMKKHIEDMQHRTRTNSQSSEPSVTKSKSKRPTSQNPAEHHH
FT                 RSNMSPPPKKQPNSNRSPIMTRSTSSQNQRDAVTPTDIDSLHDTNLLNQID
FT                 YGPSKSQH"
FT   CDS           1811..6607
FT                 /product="I-66_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTRIFSIKSIMDHPKANTNQASLTPRKVAVHTSQNIK
FT                 SYRPKHSTDKFAHRFEEWESAVPPSLPLEALQTGELVRDVLPQPVDNAPYC
FT                 TAGCSNPSRITNAIAINNTSTELQDLPTKNTPSTSISCTSQFLTPNSDPAS
FT                 ICSIRESIKHTIASSYTKNSPPSDESFVNEKLKQPLRRKYRRENQNIPELC
FT                 GETDSNPNHHLLGEGSVNPRQILAPALTPDVPSSWIEPVAAAGAGNLSVSQ
FT                 ASIQSIHPQRSNDAPVISLEINSQQPSTCSSSYTKNPPPSDESVGSEKFKQ
FT                 RQPQKYQRGNQNIPALYGESDSNPNHHLLGEGSVNPRQVLAPALTPDVPSS
FT                 WTEPAAAAGAGNLSEQQASIPSLHPQRSNDAPEIPTENNSQQPSSSSVSSI
FT                 SSGNCTQTFALHWNVRSVWRNYAEFRKIVDDNNPVAICLQEMMTNRTNGLL
FT                 NDNYKWITHSRPESMGNGICGLGIRKDVPHAFINVTSTLHVCIARIGKPYD
FT                 LTIISIYVPHATSGDELCHKLTDLIQSLEPPFLLCGDFNASHEVWGSTQSN
FT                 NRGRLLLEWAVDNNFVALNNGSPTHYQASSGSFSAIDISFSTNYLASKFSW
FT                 HCDDDLHGSDHFPLFVRFNNPLPIFPTTRRWLYKDADWKKFEKIVALKIPR
FT                 DGNVSIEEITNAIYEAAVESIPRTKGLPAKRNQIWWNEEINQVVKARRKAL
FT                 RKLRKLKNDGPDKEEAKQHFNTIKHEARKLIEEAKKKSWSSFQEIFTEKSS
FT                 TSQLWQSFNKLSGKRRSRAPGLTIDGEYNDDPSVIADHLADFFAGTCSTAA
FT                 YPEDFLQKKQAREEDNLSFLSDRVTPIDENFSVHELFQALESANGTSVGVD
FT                 NIGYLMIKNLPFHCKMTLLNAFNRIWESGNVPSVWKESIIIPIPKPGENTC
FT                 ASNSFRPISLISCVAKTMERMVNRRLMNHLEVNGILNQQQYAFRKGKGTTH
FT                 YLADLYETIAEAAERGEHCEMVTLDISKAYDRVWHRHIMETVIDCDLGTNM
FT                 NKFINNFLQQRSARVSFSGVLSKLIHLENGVPQGSVLSVSLFLLAMNSVFK
FT                 FAPKNVKVFLYADDIVIIASGKRVSYLRRRLQKAVESVENWASSIGFQLSP
FT                 VKSSTMHCCKLKKHRNWHLEGPKILLDGKEIAKNKTTRILGVTFDRKCNFN
FT                 QHTKNLKEDCRSRLNLLRAISRRADRKTLLYIGNSIVTSKLFYGLEILREE
FT                 NIEKLAPIYNQIIRIASGALRTTPILSLVVESGCLPFELMAIMTISKKACA
FT                 LIEKSDDDSNHIWRRAQDAFQNLTGEEIPKICKLATIHPRAWNKAVPCIDW
FT                 SVKAKVRAGQPPMLGLIAFREVTERKYQGYAHWYTDGSLAEGKVGYGVVGP
FT                 DTRLEASLAKQCSVFTAEAKALSQATKHARNRSVIFSDSASCLAALESGKS
FT                 KNCYIQLIEADIEGKDIRFCWIPGHSGIPGNEKADDAARCGRNRSIATEEV
FT                 PCQDTSKWIQKMIWKAHQNTWSQNPRTTLKIVKSGVGKLTDRTDRKEQIVL
FT                 TRLRLGHSIFNKKHIFEKKEPEVCTLCNRKVTVHHVLAACQRYDSERQELG
FT                 INNNLAEILSNEKDAEDKVIRFVKRIGLFSSI"
XX
SQ   Sequence 6707 BP; 2206 A; 1540 C; 1411 G; 1550 T; 0 other;
     cagttagcgt tgagcatccg aagtaatcgg tcgttctacc gcagatactg agcggatatt        60
     ttttcccgat tttcgttcta catccgagag cgctagcgct acgcctcccg gtggaatagt       120
     tttttttttt ctcaaccgag tgaagtgaca aaaacgcgaa aatattcgcg ggttaccacg       180
     ctcattacac caggggcgca tacgagtgaa gaagagtatt cccggttacg tgcgcgggtg       240
     gatgaccaag cgtctcctcc cgcatagtgc aagtgctggg agaaggtacg aagtaaacta       300
     ccgtgcttag tgtcgaagtg tatgcaacaa ggcgacatca acagccaata aagtgactaa       360
     ccgagtggaa ttgacgcgtt gtaaggtagg gtcaggtttc ctttttcctc ttcctttccc       420
     accgtaccgg ggtaggtagt gggtgaccac tacccttatt ctacggttct gatcccaccg       480
     gtttgaagaa acctctagca ttgcatggcc tccactagcg gaggcgaccc tggagggtcc       540
     aacggaagaa cgctacccgt gtatctcgat ggacgtaacg agtttggagc cgtaacgacg       600
     ttgttaatga caggaaaaga tggcaaaaac ttacccattg aaccatggat catcggaaag       660
     agcctcgagc tctgcgctgg tccgcttgaa agtgcgaaaa gtgagaacaa gtgtacacga       720
     tacgttatca aaacgagaaa gcccgcacaa gtggaaaagc tgttgaaaat gactcaactg       780
     atagacggaa cggaagtatc aatcatacct catccaacac ttaacgtaag ccgatgtgtt       840
     atttctgcat acgatctttt ggaaaaagag gagactgaaa ttgttcggga aatgagctcg       900
     caaggggtta ttggtgctcg taggattatg agaaacaaca aagaaagaac accagcattg       960
     atccttacgt tcaatcgaag cgtgtatccc gaaaatgtga aagttggagt actcaacttt      1020
     aaaacgcgcc catactaccc taatccattg ctctgctttg gttgctacga atacggacat      1080
     cctcgctctt cctgtaccaa tccaaggcgc tgctacaact gctcacaaga ccacgaggag      1140
     aatgaaatgt gcgaaaatgc agcgttttgc agaaattgca agaaagatca tcggccttct      1200
     agccgtcagt gtcctatcta caaaatcgag acagatataa tcagaaccaa gatcgacctc      1260
     aacatttcga gtgcagaagc gagaaagcgt gttgctgctg gaaacggaac ctacgcacaa      1320
     gtggcagctc aaccacggtt ggatcaatcg agaatggatg cacttacggc tcaaatagcc      1380
     gaaaagaaca aaaaaatcga gaaacttgag gctgacctcg agcgtaattc tcgcgagatg      1440
     cttgccaagt tgaatgaagt gttggaaaga attgaagaga aagacaacga gatcaaggac      1500
     ttgttgatgc atatccagca tcgtgatgag aagatcacta aaatcgaggc tgacaacaaa      1560
     aacatgaaaa aacacatcga ggacatgcaa cacagaacaa ggaccaactc gcaaagcagt      1620
     gagccatctg tcactaaatc gaaatcaaaa cgaccaacat cacagaaccc cgctgaacac      1680
     catcatcgct ctaacatgtc gcccccgcca aaaaagcaac cgaattccaa cagaagtccc      1740
     attatgacta gatcaacatc aagccaaaac caaagggacg cggtaactcc aactgacatc      1800
     gactctttgc atgacacgaa tcttctcaat caaatcgatt atggaccatc caaaagccaa      1860
     cactaatcaa gcgtcgttga cccctagaaa agttgccgta cacaccagtc aaaacatcaa      1920
     aagttatcgc ccaaagcaca gcacagataa attcgctcac cggtttgagg agtgggaaag      1980
     tgcagtacca ccctcacttc ctttagaagc gttgcagact ggggaacttg tccgggacgt      2040
     tctaccccaa cctgttgaca atgcacccta ctgcacggcc ggttgtagta atccatctag      2100
     aataacaaat gcaattgcta tcaacaacac ctcaactgaa cttcaagatc tccctaccaa      2160
     gaacactcct agtacatcaa tttcctgcac ctcacagttc cttactccca attctgaccc      2220
     tgcaagtatc tgttcaatac gtgaatctat aaaacataca atcgcttctt cgtatacaaa      2280
     aaactcacct ccctccgacg aatcttttgt gaacgaaaaa ttgaaacaac cgctacgtcg      2340
     aaaatatcgt cgagaaaacc aaaacatccc agaattgtgc ggcgaaactg acagcaatcc      2400
     aaaccatcat cttctcggag aggggtccgt aaaccccagg caaatccttg caccggccct      2460
     gaccccagat gttcccagtt cctggattga gcctgtggcg gcagccggtg cagggaactt      2520
     gtctgtatca caggcaagta tacaaagtat ccatcctcaa agatcaaatg atgccccagt      2580
     aatttcccta gaaatcaaca gtcagcagcc atcaacctgc tcttcttcgt acactaaaaa      2640
     cccacctccc tccgacgaat ctgttggaag cgaaaaattt aaacaacggc agccccaaaa      2700
     ataccagcga ggaaaccaaa acatcccagc attgtacggc gaaagtgaca gcaatccaaa      2760
     ccatcatctt ctcggagagg ggtccgtaaa ccccaggcaa gtccttgcac cggccctgac      2820
     cccagatgtt cccagttcct ggaccgagcc tgcggcggca gccggtgcag ggaacttgtc      2880
     tgaacaacag gcaagtatac caagtctcca tccccaaaga tcaaatgatg ccccagaaat      2940
     tcccacagaa aacaacagtc agcagccatc ttccagctct gtttcatcga tatcctccgg      3000
     aaattgcact caaaccttcg ctttgcactg gaacgtgcga agtgtgtggc gaaactatgc      3060
     agaatttcgt aaaattgtgg acgacaacaa tcccgtagcg atttgtcttc aagaaatgat      3120
     gacgaatagg acaaacggcc ttcttaacga caactacaag tggatcaccc acagccgacc      3180
     agagagcatg gggaacggta tttgcggcct cggcatccga aaggatgttc cccatgcatt      3240
     tatcaacgtc acttctactc tacatgtatg tattgctagg ataggtaaac catatgacct      3300
     aacaatcata tcgatctacg taccacatgc cactagtggc gatgagctat gccacaagct      3360
     aactgatctc atacaatccc tcgaaccacc atttcttctt tgtggggact tcaacgcgtc      3420
     acacgaggta tggggcagta ctcaatccaa taatcgtggt cgtctcttgt tggaatgggc      3480
     agttgacaac aatttcgtag ctcttaacaa tggttcccct acacactatc aagcgtcgtc      3540
     tggatctttc tcggctattg atataagctt ttctacaaat tatctcgcat ccaaattctc      3600
     atggcattgt gatgatgatt tacacggcag cgatcacttc ccactttttg tacgttttaa      3660
     caatccgctc ccaatcttcc ccacaacaag aagatggttg tataaggatg cagattggaa      3720
     aaaattcgaa aaaattgtcg ccttaaaaat tccacgcgac ggtaatgtat ctatcgagga      3780
     aattactaac gccatttatg aggcagctgt agaatcaatt ccgagaacaa aaggtcttcc      3840
     ggcaaagagg aatcaaatat ggtggaatga agaaatcaat caagtagtga aggcgcgaag      3900
     aaaggctttg aggaaactca gaaagctcaa aaatgatggt ccagataaag aagaagcgaa      3960
     gcaacatttc aatacaatta aacatgaagc aaggaagttg atcgaagaag caaaaaagaa      4020
     gtcgtggtct agtttccaag aaattttcac agagaaatcc agcacctctc aattgtggca      4080
     aagtttcaac aagttatccg ggaaacgacg aagtagagcc ccaggtctca ccattgatgg      4140
     agaatacaac gacgatccat ccgttatagc ggatcacttg gcggactttt tcgcaggcac      4200
     ttgttctacg gcagcatacc cagaagactt ccttcaaaaa aagcaagcac gagaagaaga      4260
     caatctttca tttttgtcgg atagagtaac cccgattgat gagaattttt ctgttcacga      4320
     attatttcaa gcattagaga gcgcgaatgg aacatcagtt ggagtcgata acattgggta      4380
     tcttatgata aaaaatctac cattccactg caaaatgact ctactaaatg ccttcaaccg      4440
     catttgggaa agtggcaatg tcccttctgt ttggaaagag agtatcataa ttccgattcc      4500
     aaaacctggg gaaaacactt gtgcatccaa tagcttccga ccaatatctt taattagctg      4560
     cgttgccaaa acaatggagc gaatggtaaa tcgccgactg atgaaccatc tagaagtcaa      4620
     tggaatactc aaccaacaac aatacgcgtt ccggaaagga aaaggaacaa cacactatct      4680
     agcagatcta tatgaaacta tcgccgaggc agccgaaaga ggagaacatt gtgagatggt      4740
     tacccttgat atcagcaaag cttatgatcg ggtatggcat aggcacatca tggaaaccgt      4800
     cattgactgt gatctcggta cgaacatgaa taaattcatc aataacttcc tgcaacaacg      4860
     atcggcgagg gttagctttt ctggagtcct ctcaaaattg atacatctag aaaacggtgt      4920
     cccacagggc tccgtgctct cagtgtctct ttttcttcta gctatgaatt cagtcttcaa      4980
     gtttgccccg aaaaatgtaa aagtttttct ctatgccgac gatattgtca tcattgcatc      5040
     tggcaaacgc gtaagctacc tgcgacgtag acttcagaag gctgtagaga gtgtagaaaa      5100
     ttgggcctca agtattggtt ttcaattatc accggtcaaa tcatccacta tgcattgctg      5160
     caagctcaaa aagcatcgta attggcacct cgaaggacct aaaattcttc tagatggaaa      5220
     ggaaatagcc aaaaataaga caacccgaat cctcggagtc acctttgaca gaaaatgcaa      5280
     cttcaaccaa catactaaaa atctgaaaga agactgtaga agcagattaa atcttcttag      5340
     agcaatctct agaagagcag accgtaagac cctattgtat ataggaaact ccatagtaac      5400
     ttcaaaactt ttctacgggt tagagatact tcgcgaagaa aacatcgaga aacttgcacc      5460
     aatatacaac caaattatta gaatagcttc tggtgcactt cgaactaccc caattctttc      5520
     cttagtggta gaatctggat gtctaccatt tgaactcatg gctataatga caattagcaa      5580
     aaaagcatgc gcattgatag aaaaatctga tgacgattct aatcatattt ggaggagagc      5640
     tcaagatgcg tttcaaaacc taacaggcga agaaatacca aaaatatgca agctcgcaac      5700
     aatacaccca agagcgtgga ataaagcggt cccttgcatc gattggtccg taaaagcgaa      5760
     ggtaagagct ggacagcccc ctatgttagg acttattgct ttcagagagg tgacagaaag      5820
     aaaataccaa ggatatgctc actggtacac ggacggatcc ctcgccgaag gaaaagttgg      5880
     gtacggagtt gtaggaccag acacgagatt agaagccagc ctagcgaaac aatgttcggt      5940
     gttcactgcg gaagctaagg cactatcaca agcaaccaaa catgccagaa acagatcagt      6000
     catctttagt gattcagcta gttgcctagc agcattggaa tctggaaaat cgaagaactg      6060
     ttacatccaa cttattgaag ctgatattga agggaaggac attcgttttt gttggatacc      6120
     cggacattca ggaatcccag gaaatgaaaa agccgacgac gcagcacgat gtgggagaaa      6180
     ccgatcaatt gcaactgagg aagttccttg tcaggatacc agcaaatgga tacaaaagat      6240
     gatctggaag gcccaccaaa acacatggag tcaaaatccc aggactacct tgaaaatagt      6300
     taaaagcggt gttggaaaat tgacagatag aacggacaga aaggagcaaa tagtattaac      6360
     tagattacga ttaggtcatt caatttttaa taagaagcat atttttgaga aaaaagaacc      6420
     tgaagtgtgt acgttatgta atagaaaagt aacagttcat catgtacttg ctgcgtgtca      6480
     gcgatacgat tctgaaagac aagagctagg aataaacaac aatttagctg aaattcttag      6540
     caatgaaaaa gacgcagaag acaaggtaat aagatttgta aaaaggattg gattgttcag      6600
     tagtatataa gtcaaattgt aaaacaaaat aacttttgat aataaaaccc ttttaattaa      6660
     gagacgaatg ccccttctgg gtaaagtctc tataaacaaa aaaaaaa                    6707
//
ID   I-67_AAe    repbase;    DNA;    INV; 6069 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-67_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6069
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1338-1338 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           329..1693
FT                 /product="I-67_AAe_1p"
FT                 /translation="MAEASQGPHLGGLFDNPPGSTIGTLVPSWLLSNDEIG
FT                 YQIVLVMQVRRELDSGEKEINHRLPSPIVIGLSVEQVIGAEKAREIVASKE
FT                 GRGTKYLLRTNSRLTAEKLLTIKNLVDGTLVEVVPHSTLNSVEGVVYEPDS
FT                 INDDEEKILDYLKCQGVTKVRRIRKRVNGTLRNTPLLVLSLKGAVLPQFIY
FT                 FGLLRVPMRTYYPSPLLCYNCGIYGHPKKACKEASICLHCSQEVHISDGEQ
FT                 CQNPAFCLHCKANHPIHSRECPKYQQEAKIIKHKTDNRISFGEARRELRDR
FT                 CGDTYASALQQRLHQVESEKDTIIANLRKELEAVKAELKTLKETSLSNHPN
FT                 GEIEIQNVVQSSTPTVKGVDMATKDTNSQMPSSSDSGTMTGTRTSVNATTG
FT                 RKSRKDKLSMSPPKESSHSTNNRLLHNMELRNRSRSDKRINTSPPDRNREK
FT                 RRHLDYNDGR"
FT   CDS           1683..6005
FT                 /product="I-67_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MMAASNSPSYAPENTDPAMNPDPDMDNVLAKLQTEQD
FT                 DPRIQMDYDYELLLNNTQREKIIANVKRRFEGGECVVPPSLPSTEACLGKE
FT                 AIRDVSLQPVDCRSPSSVARIHHQSCRPPLPKETLWDSEAYDRLCHFRALP
FT                 SNSNAEGYFIIDRTTGIFNHDSPSARPATSTLTRDVPVLSEEPLAAVGVAP
FT                 SSSPASIQTFISQNQQSNSIGLSNNLGLQAATIHQDEDSKNDEDSLSNSTF
FT                 GDASRKMFFLQWNIRGLWSNHPELCHLISQNRPIAIGLQEMMSKDPGNTLQ
FT                 TQYTWSLANRHYSQGAGAAGLGILNEVPHHFMVVDTPIPVSAARLHSPFNT
FT                 TVVSVYAPPNCPDVDIVETLEHIKNNLEPPFLIGGDFNAAHEAWGSTKSTR
FT                 KGMLLLTWFVDNDLIVLNNGEPTFISSSHGSTSCIDLTVASKSLARNLYWS
FT                 ISHDTHGSDHFPIRVHSEESITCTKLRKRWLYKNANWPHYEENVENFLRNE
FT                 PNLDLSIEEVTEMILSSAKSSIPRTTGQPPKRAELWWTDSVKLAVKARRKA
FT                 LRKLKRFNETDPMRDKARVEFQKARSIARKTVKLAKKEAWETFCSSFNPLT
FT                 PADIIWSNFNKLCGKRRSTFKGLTIDDKYEQDPAIIAEHFADYFEKTSTGD
FT                 SHEEVLESESRRVPLVSPENSPLDSDFSYQELLRAIDGTRGFSTGNDNVGY
FT                 PMIRHLPISGKVAMLRSFNRVWAEGKFPSLWREGIVVPIPKPGVQPNSVEN
FT                 YRPITLLSCIGKIYERMVNHRLTTFLEKSKFLHPGQHAFRAGRGTSSYFAE
FT                 LNEIIQEAKRTETHLEFALLDIRKAYDQAWRPHILNQLDRVHVGNRMRACI
FT                 EEYLNDRRFQVQYSGSFSSKKTLKSGVPQGSVLAVTLFLLAMNTVFEVVPK
FT                 DVRILVYADDILLVAASKQLSTVRRKLLTAVAAVNDWAKKVKFRLSASKSC
FT                 VLHVCQRKRHRKARVRSAIVIDGEAIPEVKTARVLGVWINRKGNFSTHSAK
FT                 TKEALHSRINFIRALAPKANRSTLWKICNAVCLSKMLYGIELFGTELTSSL
FT                 QPIFNQLLRTSSGALKSSPTYCLAVEAGELPLELRVIEILIRKYCRLVEKN
FT                 DNGYPHLRNAVDTALRETTGGVIPDITKLQRVGRRPWNCPQVKVDWSIKNI
FT                 FKKGNNTSIARIIVKEHLEKKYSNHVKIFTDGSKTQNDVGIGVVGPKLLIE
FT                 RSLHPQCSVYSAEAAALVAAARYASRSPTVILTDSASCTAAIDKGESNHPF
FT                 VQEFENIALQKNITVCWIPGHSGITGNEEADRAAERGRSARIFNRTVPSSD
FT                 VKTWIKTLVYESFQNTWDSHRTTFLKSCKPSIDKWIDRSDRREQRVLTRLR
FT                 IGHTLMTKKHLFDKQNPPICEVCNDEITVAHILLNCRKYDHIRRKIGLSNN
FT                 IQIVLNNNKKNEIKLLKFVKECKLDQI"
XX
SQ   Sequence 6069 BP; 1900 A; 1441 C; 1298 G; 1429 T; 1 other;
     cagtgaatta ttgcacagcg ataacaacgg tttatttacg tccgcgtgcc ggtagtttac        60
     ttcgactatt cgatagttat aaagcgtatt aaattcctta ttacatcgga atactagcgt       120
     tagtatagtg tgtagcagct acatgcttta gttgctcgat taacggtgat tcatactagt       180
     tttcaagtga aaactttttg ctaacaagca aagcgagccg tcatcacaag cgtcgcaacg       240
     aactagcacg gatcccgttc gatttggtgt atttggcttg cacaccactg ccgagcattg       300
     agtagcagtt tcaaataccg cttcggccat ggccgaggct agtcaagggc cccatttggg       360
     ggggctcttt gataaccctc caggaagtac aataggcaca ctagttccta gttggctact       420
     gagcaatgac gagataggat accagatcgt actcgtaatg caagtccgcc gtgaactaga       480
     ttcaggagaa aaggaaatca accaccgtct tcccagcccg attgtgattg gattgtcagt       540
     agagcaagtg attggtgctg aaaaagctag agaaattgtc gcttctaaag aaggtagagg       600
     tacgaaatac cttcttcgca cgaactctcg cctaactgcc gaaaagcttc taaccatcaa       660
     aaatctggta gacgggacac ttgtggaagt cgttccccac tcaaccctca attcagtcga       720
     aggtgtggtc tacgagccgg attcaataaa cgatgacgaa gaaaagattc tagactactt       780
     gaagtgtcag ggggtaacta aggttcgacg cattcggaaa cgggtcaatg gaactcttcg       840
     taacactcca ttgcttgtat tgtcactgaa aggcgctgta ctcccccagt tcatatactt       900
     cggattacta cgagttccaa tgcgtacgta ttatccatcg cctcttctgt gttataattg       960
     tggaatctat ggacacccta aaaaggcctg taaagaagca tcaatctgcc tacactgttc      1020
     tcaagaagta catatttccg atggggaaca gtgtcaaaac cctgcgtttt gtttgcattg      1080
     taaggcaaat catccaatcc actcgcgcga atgtccgaag tatcaacaag aagcgaaaat      1140
     catcaagcac aaaaccgaca acagaatctc tttcggtgaa gcccgccgtg agctgcgcga      1200
     tagatgtggc gatacgtacg ccagtgcatt acaacaacgg ttgcatcaag ttgaatccga      1260
     aaaggacacg attattgcca accttagaaa agaactcgaa gccgtcaaag cagaattaaa      1320
     aactctgaaa gaaacctcac tgtcgaacca ccctaacggc gaaattgaga ttcaaaatgt      1380
     ggtgcagagc agcaccccga cggtaaaggg agttgatatg gctacaaaag acactaacag      1440
     ccaaatgccg tcgtcatccg attctggtac catgactgga actcggacaa gcgtaaatgc      1500
     aactaccgga aggaaatctc ggaaagacaa actatcaatg tcacctccaa aagaatcttc      1560
     gcacagcacg aacaatagat tgcttcacaa tatggaactg cgaaaccgaa gccgaagtga      1620
     caagcgtatc aatacctccc ctccggatcg gaaccgtgaa aaacgaaggc atctagatta      1680
     caatgatggc cgctagtaac tctccctcgt acgcccctga aaataccgac cctgcaatga      1740
     atccggaccc tgatatggac aacgtactag caaaactcca aactgagcaa gacgaccctc      1800
     gcatacaaat ggactacgat tatgaacttc tcctcaacaa cacgcaacga gaaaaaataa      1860
     tagcaaatgt aaaacggcga tttgagggag gsgaatgtgt agtacccccc tcacttccaa      1920
     gcacggaagc gtgtctaggc aaggaggcaa tccgggacgt ctctctccaa cccgttgact      1980
     gccgatctcc tagctcggtc gcaagaatac atcatcaatc atgtcgacca ccacttccga      2040
     aagaaacact ttgggattct gaagcatacg accggctgtg ccattttcga gcgctgccct      2100
     ctaatagcaa cgcagaagga tacttcatca ttgatcgcac caccggtatc ttcaaccacg      2160
     attcgccaag cgcgaggcct gccacgtcga ccctgaccag ggatgttccg gttttgtccg      2220
     aagagcctct ggcggcagtc ggcgtggccc cttcatcatc tccggcaagt attcaaactt      2280
     ttatatctca aaaccagcag tcaaactcca ttggtctttc caacaaccta gggctacaag      2340
     cggctacaat tcatcaagac gaagattcaa aaaacgatga ggactctctc agcaactcga      2400
     ccttcggtga cgcaagcaga aagatgtttt ttctccaatg gaatattcgc ggcctttggt      2460
     ccaatcatcc cgaattgtgc cacctaatct cgcagaatcg tccaatcgca attggattac      2520
     aagagatgat gtctaaagat cctggcaaca ccctccagac acagtacaca tggagccttg      2580
     ctaatcgtca ttacagtcaa ggcgctggtg cagctggttt aggaatcttg aatgaggttc      2640
     cacatcactt catggtggta gacaccccaa tcccggtctc cgccgcacga ctgcatagtc      2700
     cattcaacac taccgtggta tccgtatacg ctcctccaaa ttgcccggat gtggacatcg      2760
     tagaaacttt agaacacatc aaaaacaatc tagaaccgcc atttctcatt ggtggcgatt      2820
     tcaacgcagc ccatgaagca tggggcagca ccaaatcaac gcgaaaaggt atgctccttc      2880
     ttacgtggtt cgtagacaat gacctgatag tactcaataa tggagagcca acgtttatca      2940
     gctcatccca tggcagcaca tcttgcatag atctaaccgt agcctctaaa agtctagcga      3000
     gaaatctata ttggtcgata tctcatgaca cacacggtag tgatcatttc ccgatccgtg      3060
     tccattctga agaaagcata acctgtacaa aactccggaa acgttggcta tacaaaaacg      3120
     ccaactggcc acattacgaa gaaaacgttg aaaattttct gcgtaacgag cccaacttgg      3180
     atctttcaat tgaagaagta actgaaatga tccttagctc cgctaaatca agcattccac      3240
     gaacaacagg ccaaccaccc aaaagagcag agctatggtg gacagattca gtgaaacttg      3300
     ctgtaaaagc acggcgaaaa gcactaagaa aactgaaacg ctttaatgaa actgatccaa      3360
     tgagagacaa agcacgagta gaatttcaaa aagctcgtag tattgctagg aaaacggtga      3420
     aactggcaaa gaaagaggca tgggaaactt tctgcagctc ctttaatcca ctcaccccgg      3480
     ctgacattat ttggagtaat tttaacaagc tatgtggaaa aagaagatca acgtttaaag      3540
     gactcacgat tgatgacaag tacgagcagg atccagcaat cattgccgaa cactttgctg      3600
     attacttcga aaaaacttca acgggcgata gtcacgagga agtactggaa tcagaaagca      3660
     ggcgtgtacc gttggtttcc ccagagaata gtccattgga cagtgacttc agttaccaag      3720
     agcttctacg agcaatcgat gggaccagag gattttcaac aggtaacgat aacgttggtt      3780
     atcccatgat tcgccatcta cccatctccg gaaaagtggc aatgctacga agcttcaacc      3840
     gcgtctgggc tgaaggcaag tttccttctc tatggagaga agggattgtt gtaccaatcc      3900
     ccaaacctgg tgttcaacca aattctgtag agaattatcg tccaatcact ctactgagtt      3960
     gcattggaaa gatatacgag cgcatggtga atcatcgtct gacaactttc ctcgaaaaaa      4020
     gcaagtttct ccatccggga cagcatgcgt tccgagccgg cagaggaacc tcgtcatatt      4080
     ttgctgagtt gaacgaaatc atccaagagg ccaaacgaac agaaactcat ctcgaattcg      4140
     ctctattgga catccggaag gcatatgacc aagcctggcg accacatata ctcaaccaac      4200
     tcgatcgtgt tcacgtcggt aatcggatga gagcttgcat tgaagaatac ctaaatgata      4260
     ggcgcttcca agttcagtac agcggatctt tttcatccaa aaaaacattg aaaagcggag      4320
     tgccgcaagg atcagtccta gcagtgactt tgtttctcct ggccatgaac acggtgtttg      4380
     aagtagttcc caaagacgtt cggatcttgg tgtacgccga tgacatttta ttggtagcag      4440
     catccaagca actgtccacc gtacgacgaa aacttctgac tgcagttgct gcagttaacg      4500
     actgggctaa aaaagtcaaa ttccgtctat cagcttctaa gtcttgcgtc ctacacgtat      4560
     gtcagagaaa aagacacaga aaagcgcggg taagatcagc aattgtgatc gatggcgaag      4620
     caatcccaga agtaaaaact gcgcgcgttc tcggggtatg gataaaccgg aaaggtaatt      4680
     tttccactca tagtgccaag acaaaagaag cacttcacag tcggatcaac ttcatcagag      4740
     ctttggcacc gaaagcaaat cgatcaacct tgtggaaaat ctgcaatgca gtttgtttgt      4800
     caaaaatgtt gtacggtatc gaacttttcg gaacagaact aaccagttct ctgcagccta      4860
     tcttcaacca actgttaaga acatcatcgg gggcactcaa atcttctccg acctattgtc      4920
     ttgctgttga agctggggaa ctgccactag agctacgggt catcgaaata ctaatccgta      4980
     agtactgccg actggtggaa aaaaacgata acggctatcc tcatctccgc aatgcggttg      5040
     atactgcgct ccgcgaaact acaggaggtg ttattcctga tatcactaag cttcaacgtg      5100
     ttggccgccg tccatggaac tgccctcagg taaaagtaga ctggtccatt aaaaacatct      5160
     tcaagaaagg caacaatacc agtatagcaa ggatcatcgt taaggagcat cttgaaaaga      5220
     aatactccaa tcatgtgaaa atttttactg atggatcgaa aactcaaaat gatgtcggta      5280
     tcggagtggt tggacctaaa ctattaatcg aaagaagttt gcacccacaa tgttctgttt      5340
     actctgcaga agccgccgct ctggtagcag ctgcacgata tgcatcaaga tctccaacag      5400
     ttattctaac tgattccgct agttgtaccg ctgctatcga taaaggcgaa tccaaccacc      5460
     cttttgtgca agaatttgaa aatatcgctc ttcagaaaaa catcaccgtt tgctggatcc      5520
     cgggccactc cggaatcaca ggaaatgaag aagcagaccg agcagctgaa cgagggcgat      5580
     ctgctaggat attcaacagg accgttccct catccgatgt caaaacatgg atcaaaactt      5640
     tggtgtacga gagctttcag aacacgtggg attctcacag aacgaccttc ctgaagagct      5700
     gcaaaccttc gatagacaaa tggatagaca gatcggacag acgcgaacaa cgtgttttaa      5760
     ctcggcttcg aattggtcat actttgatga cgaaaaaaca tctttttgat aagcaaaatc      5820
     ctcctatttg tgaagtatgt aacgatgaga ttacagtagc acacattctt cttaattgta      5880
     gaaaatacga tcacatcaga agaaaaatag gactaagtaa taatattcaa atcgtgctaa      5940
     acaataacaa gaaaaacgaa atcaaactat tgaaatttgt taaggaatgt aaactagatc      6000
     aaatctaaat taaaacagag gtgaatgaac ctatgcaggt ttaaaacctc ttaaataaaa      6060
     aaaaaaaaa                                                              6069
//
ID   I-68_AAe    repbase;    DNA;    INV; 6040 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-68_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6040
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1339-1339 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..1663
FT                 /product="I-68_AAe_1p"
FT                 /translation="MAGANHAPSRGDPGDPGGSLRGKRQPDWMLSEDEMGQ
FT                 TMVLLLRRKPNEANTQNSQQSPLPNPFIIYASIELAVGVQDAAKIGMTKEG
FT                 RGTRYILRTNLKSVYRKLTNMTQLTDGTVVEVISHPTMNKVQGVVYESDST
FT                 DVDEVALLNYLTPQGVQAVRRITKKVNGSVRNTPLVVLSFQGTLLPEFIYF
FT                 GGLRVPVRTYYPAPTVCFQCGTYGHPRKFCQQPRICLQCSQAPHTSEGEQC
FT                 SNAPYCMHCTGTHSPTSRTCPKYKDESNVIRIRIDRNVSTAEARKIYASET
FT                 QKETIASEVQKRLREEESNKDKIIAELRAEVETLKRKLEAIINGQRLKSRD
FT                 SSQIEKKSVFLQXNSSCSNQNTQRMSRKDKTFVSPPSLHSDIRRTADHAMD
FT                 EAIRTRSRSRKHLMEISPTDVTHKSGKRASLIADSGGTSEK"
FT   CDS           1663..5784
FT                 /product="I-68_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTKMFPPKTHHKMTDPAMHNDSISDDLRHATDAISER
FT                 PCDPSDYDLDTNSHDSIIPSRKILNSPSQPVDTTSRFGGGECVVPPPLLIK
FT                 GASLGGEVIQDAILLPVDHQTPSSAASSNNSTLPKIPSDSSAYDQLYNFYP
FT                 QPSTSNNFVTQNIDSPSARRTTSTLTRDVPSLLDEPLAAVDVARPSSRASI
FT                 PVLSLARHESHDTSHHVSETPPVRESSPTSNCSSTSETEVNNKIIMLQWNI
FT                 RGLWKNHPELSHIVNQNAPICIGLQEMMTKKVSTALSSRYDWELSSRHYSQ
FT                 GGGAAGLGVLKEFPHQFYHFVTCIPVCAARIQSPLNISIVSIYVPPNTCDQ
FT                 DLITTLDSIIENVDPPFVIGGDFNAAHEAWGSMKTTKRGCLLLEWFVEHQL
FT                 IVINNGEPTFISSAHGTTSAIDLTVVSCSLAAKLRWSIYKDTFGSDHFPIR
FT                 VTSDQNTPSQRSRKRWIYKDADWISFENVILESLSSHSDIDVEQLRNLIIG
FT                 AAEKSIPXSSGVSKGRSEIWWTNEVKEKVKARRKALRKLKRLNPSDPLHDD
FT                 AKKAFQQARAIARKTIESAKRDSWNNFCQMFNPNTSSDVLWSNFNRLMGKR
FT                 RNGQRGLQIDNSFTQDTSVITEHFANYFYQASSGNSSTDQESGETGWDQNI
FT                 QVSENTRLDTDFTIYELLRAIDVTNGHSTGEDQVGYLMIKHLPYAGKLAML
FT                 KSFNKVWEKGEFPNSWKQGLVIPIPKSNRQAQHAEGYRPITLLSCIGKIYE
FT                 RMVNRRLMTFLEENNLLNEHQHAFRAGRGTSSYFADLGEILAEIEQSNAHA
FT                 EFALLDINKAYDQVWRTHIMRQIDSLNTGKRIRSCISNFLLDRRFRVSYGG
FT                 SLSKDRIQENGVPQGSVLAVTLFLIAINPVFDVIPKNIRVLVYADDIVLVA
FT                 ISKHLPKVRNRLIEAVDAVNTWAKSVKFRLSAPKSCILHMCQRSRHRWRCA
FT                 RNVVKIDNEIVPEVKAARFLGIWINRKGSFLVHGAKIKEALFSRINCLKAL
FT                 AFKADRNILWRIGNAVCVSKLTYGIELFGLNLLNTFQSTYNEILRITSGAL
FT                 RSSPTLSLAVEAGQLPLHLRLVDTLARRYIRLAEKPFFNHQHLRKCAIEAF
FT                 ADETGHDIPEIAKLLWIGKIPWDMHQVKIDWSVRSVFKKGNNKNIARACVK
FT                 ELQNKKYEEYCQMYTDGSKSGTEVGLGVVCQELQIEAGLLAQCSVYSAEAA
FT                 ALAVAVQTADNRATVIFSDSASCMDAIKKGDSKHPFIQSILKEASLKDITF
FT                 CWIPGHSDIPGNEAADQAAERGRTAPPLHNVAPASDVIKWINKRLHDKFQR
FT                 MWNDHRATFLQKIKPTVGKWIDHQDRQEQRALTRCRIGHTRLTKKHLFDRN
FT                 QSATCEVCQGS"
XX
SQ   Sequence 6040 BP; 1870 A; 1458 C; 1290 G; 1419 T; 3 other;
     acttgagttc gggacacagt cgtcattacc acgcgtccgt gttactctaa attgcggtga        60
     tmtttcccag tgaaataagc cgaatcaatc tccggaaatt tgctaacata gcaagttagt       120
     agtgctgatt tagccgggag tacaagaaat ccagtgaagt tattaaaata gctgaaattg       180
     ccgccgatat atctgcttac ggctgctaaa gataacaaca agtgttatag catcaccgct       240
     ccattgtttt gtcgtaccag ccagtgctac ctatagcaat agcgatagcc cgattaagtg       300
     gagagactcg acagcagcca ataaagtgtt ttgattgtcg ttactacatc ccggcctgat       360
     ggccggggca aatcatgccc cgtctagggg tgatcctggc gatccaggtg ggtcgttgag       420
     gggaaaacgc caaccagact ggatgctcag tgaggacgaa atggggcaaa cgatggtgtt       480
     gcttctacgc agaaaaccaa acgaagcaaa tacgcaaaat agccaacaat cgccactacc       540
     aaaccctttc atcatttacg catccattga actagcggtc ggagtgcaag atgcagcgaa       600
     gataggaatg accaaggaag gccgcggaac taggtacata cttcgtacca atttgaaatc       660
     agtctatcgt aagctgacta acatgaccca gctcactgac ggaaccgtcg tcgaagttat       720
     ttcccatcct acgatgaaca aggtgcaggg tgtcgtttac gaatctgatt ctactgatgt       780
     cgacgaggta gcacttctca actatctgac gccgcaagga gtacaagctg tacgcagaat       840
     cacgaaaaaa gtcaacgggt cggttcgaaa cactcctcta gtcgtattgt cattccaagg       900
     tactctcctg ccggaattca tctactttgg cggactccgc gtccccgtac gcacctacta       960
     tcccgctccg actgtttgtt tccagtgtgg cacctatgga catcctcgca aattctgtca      1020
     acagcctaga atttgcctgc aatgctccca agcaccacac acatcagaag gggagcaatg      1080
     cagcaacgct ccgtattgta tgcattgtac aggcactcac tcaccaacat cacgtacgtg      1140
     tccaaaatac aaggatgaat ctaacgtgat ccgaattcga atcgatagga atgtgtcaac      1200
     tgctgaagct agaaaaatct acgctagtga aacacagaag gaaacgatcg ccagcgaggt      1260
     gcaaaaacgg ctaagagaag aggaatcgaa caaagataaa attattgcgg aactgcgggc      1320
     tgaagtcgaa acattaaagc gaaaacttga agccatcatc aacggtcaac gtctaaaatc      1380
     acgcgacagc tcccaaatag aaaaaaaatc ggtgttcctc caascaaact catcatgttc      1440
     caaccagaac actcagcgaa tgtcacgtaa agacaaaacg ttcgtatctc ctccgtctct      1500
     ccacagcgat attagaagga ccgcggatca tgcaatggac gaagcgatac gaacacgcag      1560
     taggagcaga aaacacctaa tggaaatatc accaactgat gtcactcata aatcaggcaa      1620
     aagggcatcc ttgatcgccg actctggagg cacctctgaa aaatgaccaa gatgttccct      1680
     ccaaaaacac atcacaaaat gactgaccca gctatgcata atgactcgat atcggatgac      1740
     ctacgacatg caaccgacgc tatctctgaa cgaccctgcg acccttcgga ctacgatttg      1800
     gatactaact cacacgactc cataattccg tctagaaaaa tactcaactc tccatctcaa      1860
     cctgtggata caacatcgcg gtttggaggt ggggaatgtg tagtaccccc tccactcctg      1920
     ataaagggag cgagcctggg tggagaggtg atccaggacg ccatccttct acctgttgac      1980
     caccaaaccc ccagctcggc cgccagctcg aacaactcaa cgctgccgaa aataccgtcc      2040
     gattccagcg catacgatca gctctacaac ttctaccccc agccatctac gtccaacaat      2100
     ttcgtcaccc aaaacattga ttcgccaagt gcgaggcgca ccacgtcgac cctgaccaga      2160
     gatgttccga gcttgctcga tgagcctctg gcggcagtcg acgtggctcg cccttcatct      2220
     cgggcaagta ttcctgtatt atcattagct agacatgaat cccacgatac ttctcaccat      2280
     gtttcagaaa ccccgcctgt tcgcgaaagc tcccctacaa gcaactgctc ttcgacttcc      2340
     gaaactgaag tgaacaacaa gatcatcatg ctccaatgga acatcagagg cctttggaaa      2400
     aatcacccag aactctctca tatcgtcaac caaaatgcgc caatctgcat cggccttcag      2460
     gaaatgatga caaagaaggt tagcacagca ctcagttccc gctacgactg ggaattatcc      2520
     agccgtcact attctcaagg tggtggagca gctggattgg gggttctcaa agaattccct      2580
     caccaattct atcactttgt tacatgcatc cctgtatgtg ccgcccgaat acaatccccg      2640
     ctgaacatat cgattgtcag tatctatgtg cctccaaaca catgtgatca agatcttatt      2700
     acgacgcttg acagcataat tgaaaacgta gatccacctt tcgtcatcgg cggggacttt      2760
     aacgccgccc acgaagcttg gggtagtatg aaaactacta aacgaggatg tcttctactc      2820
     gaatggttcg tcgaacatca acttatcgta ataaataatg gagaaccaac tttcatcagc      2880
     tctgctcatg gaacaacttc ggcaatcgat ctaactgtcg tgtcatgtag ccttgcagca      2940
     aaacttcgat ggtcaatcta caaggatacc ttcggaagcg accacttccc catcagagtc      3000
     acctcggatc aaaatacacc gtctcaacgt tcacgtaaac ggtggattta taaagatgct      3060
     gactggatct cttttgaaaa tgttatcctt gaatcgcttt cgtcgcattc agatatcgat      3120
     gtcgagcagc taagaaatct catcatcgga gcggcagaaa agtccatccc amaatcttcc      3180
     ggagtatcaa aaggaagatc tgaaatttgg tggacaaacg aagtcaaaga aaaagttaag      3240
     gcacggcgta aggctcttcg caaactgaaa cgtctgaatc cttcagaccc tcttcacgat      3300
     gacgctaaaa aagctttcca gcaagctcgg gcgattgcaa ggaaaacaat cgaatctgcc      3360
     aaacgtgatt cgtggaataa tttttgccag atgttcaatc ctaacacttc atccgatgtg      3420
     ctttggagta attttaaccg attgatggga aaaagacgaa acggacagcg aggactccaa      3480
     atcgacaact cgtttaccca agataccagt gtaatcacag agcacttcgc aaattatttt      3540
     taccaagcat catcaggaaa ctctagtaca gatcaggaat ctggagaaac aggatgggat      3600
     caaaatattc aggtttctga aaacactcga ctcgatacag atttcacaat ctacgagttg      3660
     ttacgagcca ttgatgtcac taatggacac tctaccggcg aagatcaagt cggatatcta      3720
     atgatcaaac atctgccata tgcagggaag ctcgcaatgc tgaagagttt caataaagtt      3780
     tgggagaagg gcgaatttcc gaacagctgg aaacaaggac tagttatacc aatcccaaaa      3840
     tccaatagac aggctcagca tgcggaaggg taccggccaa ttacgcttct gagttgtatc      3900
     gggaaaatat acgagcgtat ggttaatcgt cgtctaatga ccttcctcga agaaaacaac      3960
     ttactcaatg aacatcaaca tgcatttcga gccggacgtg ggacatcatc ctacttcgct      4020
     gatttgggcg aaattctagc agaaatcgaa caatccaacg cgcacgcaga gtttgcattg      4080
     ctcgatatca ataaggcata tgatcaagtt tggcgaactc atataatgag acaaatcgat      4140
     agtttgaaca ctggaaaacg cattcggagc tgcatcagca attttctctt ggatcgacgt      4200
     ttcagggttt cctacggtgg ctctttgtcg aaagatcgga tccaagaaaa tggcgtcccc      4260
     caaggatctg tgttagctgt caccttgttt ctgatagcta tcaacccagt atttgacgtc      4320
     attccgaaaa atatacgagt gctagtatat gcggacgaca tagtccttgt cgctatttct      4380
     aagcaccttc caaaagtgag aaacagacta attgaagcag tggatgctgt caatacgtgg      4440
     gcaaaaagcg tcaaattccg cctgtctgcc ccaaaatcct gtatccttca tatgtgtcaa      4500
     agatcaaggc acaggtggcg ctgtgctcga aatgttgtga agatcgataa cgaaatcgtt      4560
     cctgaagtca aagccgcacg atttctcggg atatggatca acaggaaagg aagttttctt      4620
     gtgcacgggg caaaaattaa agaagctctc ttcagccgaa tcaactgtct gaaagctttg      4680
     gcttttaaag cggatcgaaa cattctatgg agaattggga atgccgtttg cgtttccaaa      4740
     cttacgtatg gtattgaact gttcggcctc aacctcctca acacgttcca atcaacctac      4800
     aatgaaattc ttcgaataac atcgggagca ctaagatcgt cgcccacgct tagtttagct      4860
     gtcgaagccg gccagctacc attgcatctc aggctagtgg atactctcgc cagaagatat      4920
     attcgattag cagaaaaacc atttttcaac catcagcatc ttcgtaaatg tgcaattgaa      4980
     gcattcgccg atgagacagg acacgacatt ccagagatcg caaagctcct gtggataggg      5040
     aaaatcccct gggacatgca tcaagtcaaa attgactggt ccgtgagatc agtcttcaag      5100
     aaagggaata acaagaatat tgccagagcc tgtgttaaag aacttcagaa caaaaagtat      5160
     gaggaatatt gtcaaatgta cactgatgga tcgaagtcgg gtactgaagt agggctaggc      5220
     gtagtttgtc aagaactcca aatagaagcg ggcctccttg ctcaatgcag tgtttattct      5280
     gctgaagctg ctgcactcgc tgtggctgtc caaactgcgg ataacagggc cactgtgatc      5340
     ttcagtgact cagcgagctg tatggatgca ataaagaaag gagattcgaa acacccgttc      5400
     atccaatcaa tcttaaaaga agcgagcctt aaggatatca ccttctgctg gattccaggt      5460
     cactcggaca tacccggaaa cgaagcagct gaccaagcag ctgaaagggg cagaaccgcc      5520
     cctccactac ataatgttgc acctgctagt gatgttatca aatggatcaa caaacgatta      5580
     cacgataaat ttcaacgcat gtggaacgat catcgagcaa cttttcttca aaagatcaaa      5640
     ccaactgttg gaaagtggat agatcatcaa gaccgccaag agcaaagagc tctaactcga      5700
     tgcagaattg ggcacaccag gctcactaaa aagcatttat tcgaccgaaa tcaatcagca      5760
     acatgtgagg tttgccaagg gagctgaccg ttgaacacat aatcgttact tgcagaaaat      5820
     acgatgacat tcgcaacaaa actggcatta atagcaatat tcaaatagct ttgggtaaca      5880
     acaaaacaga agaagctaaa ttattgaaat tcctgaagaa aagtaattta tttgaaatgc      5940
     tgtaaactct gtacggaatt gtagtattga ttttttttct aagaggcgaa tgaacccttc      6000
     tggtttaaaa cctctctaat aaacgcaaaa aaaaaaaaaa                            6040
//
ID   I-69_AAe    repbase;    DNA;    INV; 7131 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-69_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7131
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1340-1340 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2924..7060
FT                 /product="I-69_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MVLQPLRIMDQAHDIEHLSTHTTTDLAMPSEPTTVVH
FT                 PYCEVTVPREVACNHNAQPSKPLTSNWNSTLPEFVKSNSTAYDRFRHITTH
FT                 PSTSRKPHRTKTDSPSARPSMSTLTRDVPDLSDEPLAAVDMDPCQTWASTP
FT                 PSLEPHSSANHTFESRFSDCYRISCSRGPSPESRASSNETSINENSKKETL
FT                 FLQWNVRGFWCNQAELIKLVDCELPLAIGLQEMMTRSLTNTIKNRYNWILA
FT                 DRHYNQGGGAAALGILNEIPHQLHQMSSSIPTCVARLNAPYNLTIVSIYVP
FT                 PNAEDEEVVSTLDNLITNHQPPFVIGGDFNAAHEAWGSTKSSKRGWLLLEW
FT                 FVNHQLVVLNNGEPTFISSAHGTTSAIDLTVASQSLASKLYWSIEKDTYGS
FT                 DHFPIEIRLQSNSPKPLCRKRWLYKDADWAAFEQKILENFSSEEPLPIEQL
FT                 GEKIIDAANSSIPKTTGVYRGKSQIWWTEEVQQRIKARRKSLRKLKKLSNN
FT                 DPQLEAARKEFQEARSLARKAIYKAKKESWDSFCQSFNPNTPSDILWNNFH
FT                 RLNGQRKTVQRGLTIDGKHVQDPTQIAEHFADYFYSTSSAKEHQSTEPTQP
FT                 IPARVENSNLDSDFTLQELIRAIDAAKGHSTGCDNVGYPMIRRLPLAGKLA
FT                 MLRSYNSVWSAGRFPECWKQGLVVPIPKPGANLQNADGYRPITLLSCIGKI
FT                 YERMVNHRLMTYLEENQVLNDHQHAFRAGRGTSSYFAELREIIANAEQSGS
FT                 HVEFAILDIRKAYDQTWRPNILKQIEKLNIGKCMRSCIMNFLENRRFLVSY
FT                 GGITSTERIQESGVPQGSVLAVTLFLLAINSVFDAVPRNIRTLVYADDIIL
FT                 ISISKHLPRVRSSLKKAVEAVDIWAKSVNFSLSAPKSCILHCCKKRRHRWR
FT                 NSRLHIKIDNESIPEVNVARFLGVWINRRGEFSAHGAKIKESLQNRIQYLK
FT                 AIAPKADRATIGRIAEATCISKLFYGIELFGLDLCNTFQTTYNQIVRITSG
FT                 AVQSSPVMTLVVEAGELPLKLRMSEILIRRLCRLEEKSTSHPYPHLREAAN
FT                 SALFAETGEQIPNIAKLHRDTIRPWHNKTIKVDWTIKHGFKKGQNSMNATA
FT                 LVHELLHTKYDKHDKFYTDGSKCDNLVGLGVVGRGITVEKSLPFQCSVYSA
FT                 EAAALHTAVCLADRSPTVILSDSASCLTALNKGKSKHPFIQAVEREALNKD
FT                 VTFCWIPGHSGISGNEDADHAAHRGRISHLAQVEIPAIDVINWAHHLFQLA
FT                 FQAAWESHRPTFLKRCKTTTKKWNDREDRYEQRVLTRLRIGHTRLTKEHLY
FT                 NKLVSKNCDVCHTELSVEHIVSNCIKYDNIREELGINSDLKIALGNNKHEE
FT                 VKILKFFKKCKLYDKL"
FT   CDS           join(377..1729,1726..2961)
FT                 /product="I-69_AAe_1p"
FT                 /translation="MTGSSSGPPGGPRHEPPGSSRQPYWMRSADDIGTMVL
FT                 LLRRRSSRTNDDSTKSNADRNEQLPLPNPFIVGTSIELAIGSKVDATREGR
FT                 GTRYLLRTSSKSVFNKLTKITELTDGTQVEIISHPTLNTVQGTVYDPDSKD
FT                 MSEEEILGYLSSQGVHAVRRVKKRVNNVQQNTPLLVLSFHGTQLPKFVYFG
FT                 LLRIPVKVYYPYPMICFNCGAYGHSKKNCQNCDICLHCSQSHEQNEGEKCN
FT                 NAPHCLHCNKGHAITSRDCPKYKSEQKIIQIKVDQGVSFPEARRIYADELK
FT                 KETFASVVQDRISNEMAVKDQMITALQKQVAVLTKELADLKTAIRSRAHSQ
FT                 SPAPRNTKTSNARISASQPSSVQNPSASNGSKADSPSKNANARLSRKDKCF
FT                 ISPPAKKSNCNDANTYDLRNRSKSGKRSMDISPTADSNLGKRFSGQQTRND
FT                 LISPNTHMMDDEQKIDFSTTDHAMYLELIMEEQSLDGIDYSETPMENDFGH
FT                 RLEPVQSNILLQSERFEGEQSETPISLPKQAASSSGQMVWNVNSLPADYQA
FT                 YNLTASEIRTHLLNSVKLNHVFNQHVRCVITLSSARWDKYPAPTDSPSARP
FT                 SMSTLTRDVPDFSDEPLAAVDMDLCHSRASIISFQKFLSATHTTPVSLFRN
FT                 LKNIQRPSGILGTTPTIIQSIVLQPLRIIGQAHNIEHLSTHTTTDLAMPAE
FT                 PTTVVQPYVTNCGVTLTRGGAXNHNARPSKPLINNWNSTLPESVKSNSTAF
FT                 DRFRRITTHPSTSRRPHRTTSDSPSARPSMSTLTRDVPDLSDEPLAAVDMD
FT                 LCHSRASIISFQKFLSATHTTPVSLFRNLKNIQRPFGILGIRGTIKPEYGS
FT                 TTSTNNGPST"
XX
SQ   Sequence 7131 BP; 2276 A; 1698 C; 1452 G; 1704 T; 1 other;
     cattcgagtg ttcgggatat tgttgttata caacacgcgc gagtcactct actttgcaac        60
     cctcttttag attataaata cttcgttaaa atttaccaaa cttcggttat acaagaagtg       120
     tcaccagaga tttcattata aacttgaaat tggtggaaaa acagtgatat agtgccgaat       180
     aacacagaaa tagtggtcat atcacgcggc gcatgaacaa taccaccaca aagactatac       240
     acagtgtgca gtgaaaaggt gaatcaaccc gagtggtgga ttgtactaat caacgtacaa       300
     tctcgatatc gcacgtactt ttgaaacgga gaaaaaaaag caactttgaa acaaactgtt       360
     gctaggctcc ggtcttatga ccggaagttc ttcaggccct cctggggggc ccaggcatga       420
     accaccagga agcagcagac aaccctattg gatgaggagt gcggacgaca taggtactat       480
     ggtgttgctg ctacggcgca gatcaagcag aacaaacgat gacagcacga aaagcaatgc       540
     agatcggaat gagcaattgc ctcttccgaa cccctttatt gtcggaacat ccattgagct       600
     ggcaatcgga tcgaaagttg atgctacgcg tgaagggcga ggaacgcggt atcttctccg       660
     cacctcctct aagtctgtat tcaataaact gacgaagata acagagctca ccgatggaac       720
     tcaagttgag atcatttcgc atcccacatt gaatacagta caaggcacag tgtacgatcc       780
     agattcgaag gacatgagcg aagaagagat tttaggatat cttagttcgc aaggagtaca       840
     cgcagtccgg agagttaaga aacgtgttaa caatgttcaa caaaatacac ctctgctagt       900
     tctgtcgttt catggcactc agctacccaa gttcgtgtat tttgggcttc tacgtatacc       960
     ggtaaaggtc tattacccat acccaatgat ctgcttcaac tgcggtgcat atggtcattc      1020
     caagaagaat tgccaaaatt gcgatatttg cctgcattgc tctcagtcgc atgagcaaaa      1080
     tgaaggggaa aaatgtaata acgctccaca ttgtttacac tgcaataaag gacatgcaat      1140
     aacttcacga gattgtccga aatacaagtc tgagcaaaag ataattcaga tcaaagtcga      1200
     tcaaggtgta tcgttccctg aagccagaag aatttacgca gacgaactta agaaagaaac      1260
     atttgccagt gttgtccaag atcgtattag caacgagatg gccgtgaaag atcaaatgat      1320
     cacagctttg caaaaacaag tagcggtcct caccaaagaa ctcgcagacc tcaaaaccgc      1380
     tatcaggtct agagctcata gccaatctcc ggctccaagg aacaccaaaa catcaaatgc      1440
     tcgaatttca gcatctcaac catcatcagt tcaaaatccc tccgcttcga atggatcaaa      1500
     agctgattca ccctctaaaa atgcaaacgc tagactatca cgaaaagata agtgcttcat      1560
     ctccccacca gcaaagaaat ctaattgcaa cgacgccaac acttatgacc ttcgaaaccg      1620
     tagcaaaagt ggaaaacgtt ctatggatat atcccctacc gctgatagca acctgggtaa      1680
     acgcttttca ggtcaacaga ccagaaatga cctcatcagt cctaacacat gatggatgac      1740
     gaacaaaaaa tagacttttc taccacagac cacgcaatgt acctggaact gataatggaa      1800
     gaacaatcat tagacggcat agactatagc gaaaccccca tggaaaatga ttttggacac      1860
     cgattggaac cagtacaaag caacatactt ctgcaatcag agcggtttga aggagagcaa      1920
     agcgaaacgc ctatttcgct tccgaaacag gcagcgagtt cgtctggaca gatggtttgg      1980
     aacgtcaaca gtcttcccgc tgattatcaa gcttacaact taactgcttc tgaaataaga      2040
     acccatctat tgaactccgt taagctgaac catgtattta atcaacacgt tcgatgcgtc      2100
     attactctgt catctgctcg ctgggataaa tacccggcac ctactgattc gccaagcgcg      2160
     aggccttcca tgtcgaccct gaccagggat gttccggatt tttccgatga gcccctggcg      2220
     gcagtcgaca tggacctctg ccactctcgg gcaagtatca tttcatttca aaagttttta      2280
     tctgcaacac acactacccc cgtgtcgctt ttcagaaatc tgaaaaatat tcaacgtcca      2340
     tctggcatct tgggtacaac acccacaata atccagagta ttgttctaca acctctacga      2400
     ataattggcc aagcgcataa catcgaacat ctttcaaccc atacaactac cgaccttgcg      2460
     atgcccgccg aaccgacaac ggttgttcaa ccctatgtta ctaattgtgg agtaacgctt      2520
     acgcggggag gggccagmaa tcataacgcc cgtccatcca agccgttgat caacaactgg      2580
     aactcaactc tacctgaatc ggtgaaatcg aactctactg ccttcgatcg gtttcgtcgc      2640
     ataaccacgc atccatctac aagccggaga ccacatcgaa caacatctga ttcgccaagc      2700
     gcgaggcctt ccatgtcgac cctgaccagg gatgttccgg atttatccga tgagcctctg      2760
     gcggcagtcg acatggacct ctgccactct cgggcaagta tcatttcatt tcaaaagttt      2820
     ttatctgcaa cacacactac ccccgtgtcg cttttcagaa atctgaaaaa tattcaacgt      2880
     ccatttggca tcttgggtat aagaggcaca atcaaaccag agtatggttc tacaacctct      2940
     acgaataatg gaccaagcac atgacatcga acatctttca acccatacaa ctaccgacct      3000
     tgcgatgccc tccgaaccga caacggttgt tcatccctat tgtgaagtaa cggtaccgcg      3060
     ggaagtggcc tgcaatcata acgcccaacc atccaagccg ttgaccagca actggaactc      3120
     aactctacct gaattcgtga aatcaaactc tactgcctac gatcggtttc gtcacataac      3180
     cacgcatcca tctacaagcc ggaaaccaca tcggactaaa actgattcgc caagtgcgag      3240
     gccttccatg tcgaccctga ccagggatgt tccggattta tccgatgagc ctctggcggc      3300
     agtcgacatg gacccttgcc aaacctgggc aagtactcct ccatctttag aacctcatag      3360
     ttctgcaaac catactttcg agtcacgttt ttcagattgt taccgaatat cttgcagtcg      3420
     tggaccctca ccagaaagca gagcatcttc aaacgaaacg agcatcaacg aaaactcgaa      3480
     gaaggaaacg ctgtttttgc aatggaatgt tcgtggcttc tggtgcaatc aagcagagct      3540
     aataaagctt gtagactgcg aactacctct tgcaatagga ctgcaagaaa tgatgactag      3600
     atcgctaacc aatactatta aaaatcggta caactggata cttgctgatc gtcattataa      3660
     tcaaggaggc ggagctgcag cgcttggaat actgaatgaa attcctcacc aattgcatca      3720
     aatgagctcg tccatcccta cctgcgtcgc cagattgaat gcaccgtaca acctcactat      3780
     tgtctcaata tacgttccac ctaatgcaga ggatgaagaa gtagtcagca cgctggacaa      3840
     tctcataaca aatcaccaac caccattcgt tattggagga gactttaatg cagcgcatga      3900
     ggcttggggc agtacaaaat catcaaagcg agggtggtta ctgttggagt ggttcgtcaa      3960
     ccatcagctt gtcgtcttaa acaatggaga acctacattt attagctcag cgcatggcac      4020
     cacctcagcc atagacctta ctgtggcttc tcaaagtctg gcaagcaaac tctactggtc      4080
     gatagagaaa gacacttacg gaagcgacca cttccccatc gaaatacgtc tccaaagcaa      4140
     ctccccgaaa ccattatgcc gtaagcgatg gctttacaaa gatgctgact gggctgcttt      4200
     tgaacaaaaa attctggaga atttttcaag tgaagagcct ttaccgatag aacaactagg      4260
     agaaaaaata attgacgccg ccaattcttc tatcccgaaa acaacaggag tctatagagg      4320
     taaatcccaa atctggtgga cggaggaagt acaacagaga attaaagcac gtcgaaaatc      4380
     tctcagaaag ctgaagaaac tttcaaacaa tgacccacaa ctagaagcag ctcgcaaaga      4440
     attccaggaa gcgcgatcgt tagctagaaa agcaatatac aaagctaaga aagagtcatg      4500
     ggatagcttt tgtcaatcgt tcaatccaaa tacaccttcg gatatcctat ggaataactt      4560
     ccatcgccta aacggccaaa ggaaaacagt gcaaagaggc ctaacgatcg atgggaaaca      4620
     cgtgcaagac ccaactcaaa tagctgagca ctttgcagac tacttctatt caacatcttc      4680
     agcaaaagaa caccaatcaa ctgaacccac tcagcccatt ccggcacgcg tagaaaattc      4740
     aaacctggac agcgacttca ccttacagga gcttatccgc gccatagacg ccgcaaaagg      4800
     acattctacg ggttgtgata atgtaggtta ccctatgata cgacgccttc cactagcagg      4860
     gaagttagca atgcttcgaa gttataattc cgtctggtca gctggacgat ttccagaatg      4920
     ctggaaacaa ggattagttg ttcccattcc taagccaggg gcaaatctgc aaaatgccga      4980
     tggctaccga ccaataacac tgcttagctg tatagggaag atctatgagc gaatggtcaa      5040
     tcataggtta atgacctatt tggaagagaa ccaggtttta aatgatcatc aacacgcttt      5100
     tagagccggc cgtggtactt cttcctattt tgcagaacta agggaaatta tagcaaatgc      5160
     tgagcaatcc ggctcacatg tcgaatttgc aattctagac attagaaaag cgtacgacca      5220
     aacctggagg ccgaacattc tgaaacagat tgagaagctg aatattggca aatgcatgcg      5280
     cagctgtata atgaacttcc tcgaaaacag acggtttctt gttagttatg gtggaattac      5340
     atcaacagag cgtattcaag aaagcggggt tcctcaaggc tcagtactcg ctgtaacctt      5400
     atttttacta gccatcaatt cagttttcga tgctgtaccc agaaatatcc gcacacttgt      5460
     gtacgcagat gacatcatat tgatatcgat atcaaagcac cttccaaggg ttcgaagctc      5520
     cctgaaaaag gcagtagaag ccgtagacat atgggcaaaa agtgtgaact tctctctgtc      5580
     agctccaaaa tcctgtattc tacactgttg taaaaaacgt agacatagat ggcgtaactc      5640
     tcgtctgcat atcaaaattg acaatgaaag tatccctgaa gtgaacgttg ctcgatttct      5700
     cggtgtatgg atcaatcgac ggggtgaatt ctccgctcat ggagcgaaaa tcaaggaatc      5760
     cctgcaaaat cgcatacaat acttgaaagc tatagcgcca aaagctgaca gagcaacgat      5820
     cgggcgaatt gctgaggcca cctgcatttc caagcttttt tacggaatag agctatttgg      5880
     tttggatcta tgtaacacgt tccaaacgac atataaccaa attgtgagaa tcacctccgg      5940
     agcagtacag tcatctcccg ttatgactct agtcgtcgaa gctggtgaac taccgcttaa      6000
     attgcgaatg tctgaaattc ttatccgaag actttgtaga ttagaagaaa aatcgacatc      6060
     tcatccctat ccacatcttc gagaagcagc aaatagtgca ctctttgcag aaacagggga      6120
     acaaattccc aacatagcca aattacaccg tgatacaatc agaccatggc acaacaaaac      6180
     catcaaagtt gattggacta tcaagcatgg gtttaaaaaa ggacagaact ccatgaacgc      6240
     aaccgctttg gtgcatgaac ttctgcacac aaaatatgac aaacatgata aattctatac      6300
     ggatggctca aaatgcgaca atttggttgg tctcggagtt gtgggaagag gcataactgt      6360
     tgaaaaaagt ttaccctttc aatgtagcgt atattccgcc gaagcagccg cgttacacac      6420
     cgccgtctgt ttagctgatc gctcgccaac tgttatttta tccgactccg caagttgttt      6480
     gacagctttg aataaaggaa aatcaaagca tccgtttata caagcagttg aaagagaagc      6540
     tctcaataag gacgttactt tctgctggat tccaggacat tccggtatta gcgggaacga      6600
     agatgctgat catgcggccc atcgaggaag aatatcccat ctagcacaag ttgagattcc      6660
     tgccattgat gttatcaact gggcccacca tctttttcag cttgcgttcc aagcagcctg      6720
     ggaatcacac cgcccaacgt tcttaaaacg atgtaaaaca acaaccaaga agtggaacga      6780
     tagagaagat cgatatgagc aacgcgtctt gactcgactt agaatcggtc acactaggtt      6840
     gacaaaagag catttgtata acaaattagt ttcgaaaaat tgtgacgttt gccacactga      6900
     actttcagtc gaacatatag tatcaaattg cataaaatac gacaatatcc gtgaagaact      6960
     aggtatcaat agtgacttaa aaatagcatt aggaaacaac aagcatgaag aagtcaagat      7020
     actgaaattc ttcaaaaaat gtaaattata tgataagttg taaacacaat atcttctaaa      7080
     gaggtgaatg aaccagttgg tttaaaacct ctataaataa acaaaaaaaa a               7131
//
ID   I-6_AAe     repbase;    DNA;    INV; 5822 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5822
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1357-1357 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           544..1839
FT                 /product="I-6_AAe_1p"
FT                 /translation="MDVDVHNSVLKDGDPPPGPSSSTAKTFRIKIYPISFA
FT                 GPFVVFFRKKQIPINVLLISSKIYEKYSSVKEIKKVSLDKLRVVFGSRDDA
FT                 NSLLESHLFAESYRVYAPSNFCEINGVIYDESLECDEVVSHGTGIFKNQAI
FT                 SPVHVLDCHRLSKLFLNDKGSEYVHSNCLKITFAGSVLPDFVKVNNVIFRV
FT                 RLFFPKIMHCERCLLFGHTNQFCSNKPKCAKCGQSHLSSECNKKSDLCIYC
FT                 NQKHNILKDCPVYKNNESKFHQKLKNRNQFSYSEILKNSTDYTAPNIYESL
FT                 TDDEFEDTLNLDNYIYKPPSKRKRIQKNTSKAQVKIDSNAKSFNENFPRLS
FT                 SSSSRIIPGFQRVDSDPSNSNVNENVNTSNDNNNVGENSSILGILEELVEL
FT                 LGFSDFWKKIIKIILPFVASLLDKLNAFGPIFASLFSS"
FT   CDS           1842..5534
FT                 /product="I-6_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASNSNNYLNILQWNCRSIIPKIDRLRVMLEHNKIDI
FT                 FCLNETWLSESKIVRIPSFNIIRKDRDIPFGGVLIGIRNGIEFKYINLSLN
FT                 VHFEYIIISVKHTDYHFHIICLYIPPNVNFSLSELKMVLDSVPHPFYILGD
FT                 LNAHNFAWGSDKIDGRGSLILDLIDEYNLNILNDGSFTRIAVPPLQNSCID
FT                 LSLCSNNLSFRSTWSIINDPNNSDHLPILIRMSHCMQNNHQVNSSIPDYSK
FT                 NVDWVKFSDLISFSLINLKDSNTPIENYTKFIKILFNCLLKSQKNKIVCNN
FT                 KKNKRPTFWWDNDCSIALKNKSEAFKKFRRLGSRENYFLYCKAEAWFTRTT
FT                 KFKKRNYWKXFIENLDRDTSLSTLWSVARNLRNYDNSSPVLMEYSDNWIDQ
FT                 FASKICPDFVPQSINFRTKQSINYFPELCSPFSLEELDLALSITNNTAPGI
FT                 DNIKFIVLKNLPYEGKVHLLAIYNSFLLQNVIPLDWRSVKVVSILKPGKDA
FT                 SLADSRRPISLLSCLRKLMERMVLNRLEIWAEHNNILSPCQFGFRKGRGTR
FT                 DCTALLASQIELAFNKKQDTISTFLDVSGAYDSVLIDLLFNKMNSYKIPLI
FT                 LSNFIYNLFSFKIMHFYHNGSSKFTRNSYFGLPQGSCLSPFLYNLFTCDFS
FT                 SVIPNGCFLVQFADDNVISVSGYNREIIRHYMQICLDNIDSWAYDNGFTFS
FT                 VQKTKYIIFSRKHSSVSVDLFLNGYEIEQVFEYKYLGIWYDSKLNWNFQIK
FT                 YIQKICSKRINFLRTITGTWWGAHPSDMIILYKTTIRSVLEYGCFTFGCAT
FT                 QTHFSKLEKIQFRCLRICLKLMNSTHTKSVEILAGVVPLRIRFHELNCKFL
FT                 SQCFTNQHPLIQILSDLHGINPSSKMLNSFNHCSTENILPGFPNTFYNCDI
FT                 NVHSFQTFVDKSLHWELNQIPRHMCVRYAKLCFERKFCGFDQKFIYYTDGS
FT                 LIQNSAGFGVYNIDVVHFHKLKSPCSIFVAELIALYFTCNIIKDHPPNMFV
FT                 ICTDSLSCINSIESSKFNFKTHYLILLIRKLLYDLHSQGFIIKFVWVPAHS
FT                 NIFGNEQADYLAKLGATRGIIYERNVFHSEYYAKIKRNALDSWQIDWDSSD
FT                 KGRWCHSIFPIVDESTWFKKLSVGRNFICMFSRLISNHYICNSHLYRINII
FT                 DSNLCDCGESYQDIDHIVFYCKKYILPRKKIIEKYKSLEITVPISVRDILG
FT                 SKSLPMLKILYNFFRDISYIV"
XX
SQ   Sequence 5822 BP; 1867 A; 810 C; 917 G; 2227 T; 1 other;
     cattgctgca gtaggcgttg atctggcagg acgttctttt ttcaaccaac tgacattttt        60
     ctctgaattt caggagagaa aattttcaag ttgagaggat ttggaccgtt tgtgatacga       120
     tttggagaga ggctgattat tgctattcct gtgtggtgcg gtaggagaat atatcctgtg       180
     tggtgcggta ggagaatata acctgtgtgg tgcggtgttt gaagatttgg aagcggacgt       240
     tattcgtcgg tatttcaaga tctcctgaac aagattcaaa ggagtgttcg actttgggtc       300
     atctttcctg tgtggtgcga aagaagtaat tgcctgtgtg gtgcggagga agttattgct       360
     gtgtggtgcg cgaggagaaa gttatcaaga ggacgttaca tcaagtttga agcttgaaat       420
     ctcatcttcg cgtggaaatt taagtttgga gttcctaagt atctttttat tattattttt       480
     atttactgtt ttcattaaaa gttttgattt tctttcaaat tttgatattt ttgcacccca       540
     attatggatg ttgatgtgca taattctgtt ttaaaagatg gtgatcctcc accgggacca       600
     tcatcttcta ctgctaaaac atttcgtata aaaatatatc ccatttcttt tgctggtcca       660
     tttgtggtat tttttcggaa aaaacaaatt ccaattaatg ttttactaat ttcatccaaa       720
     atttatgaaa agtactcttc tgtcaaggaa atcaaaaagg tttcacttga caaattacga       780
     gtcgtgtttg gttcgcgtga tgatgcaaat tcacttttag aatctcatct tttcgcagaa       840
     tcttatcgtg tatatgctcc aagtaatttt tgcgaaatta atggagttat atatgatgag       900
     tctttggaat gtgatgaagt tgtaagtcat ggtaccggta ttttcaaaaa tcaagctatt       960
     tcacctgttc atgttttaga ttgtcatcgt ttgtctaaac tttttttgaa tgacaaaggc      1020
     tctgaatatg ttcattctaa ttgtttgaaa attacatttg ctggatcagt acttcctgat      1080
     tttgtaaaag taaataatgt catttttcgc gttagacttt ttttcccaaa aataatgcat      1140
     tgtgaacgat gccttctttt tggacatacg aatcaatttt gctccaataa acctaaatgt      1200
     gcaaaatgtg gtcaatcaca cttatcatcg gaatgtaata aaaaatctga tttgtgtatt      1260
     tattgtaatc aaaaacataa cattctgaaa gattgtcctg tgtataaaaa taatgaatcc      1320
     aaatttcatc aaaaattgaa aaacagaaat cagttttctt attccgaaat tttgaaaaat      1380
     tcgacggatt atactgctcc gaatatttat gaatctttaa ctgatgatga atttgaagac      1440
     acattgaatt tagataatta catttataaa ccaccatcaa aaagaaaaag aattcaaaaa      1500
     aatacatcta aagctcaggt taaaattgat tctaatgcaa aatcattcaa tgaaaatttt      1560
     ccgcgattga gttcttcatc ttctcgtatt attccaggtt ttcaacgagt tgattctgat      1620
     ccatcaaata gtaatgtgaa tgaaaatgtc aatacttcaa acgataacaa taatgttggt      1680
     gaaaattctt caattttagg aattttggag gaattagtag aattgttggg atttagtgat      1740
     ttttggaaaa aaattattaa aattatttta ccatttgttg cctccctact tgataaattg      1800
     aatgcttttg gacccatctt tgcttcatta ttttcatcgt aatggcttca aattccaata      1860
     attatttgaa tattttacaa tggaactgta gaagcataat tccaaagata gatagattga      1920
     gagttatgct tgaacataac aaaattgata tattttgttt aaatgaaact tggctatctg      1980
     aatcaaaaat agtacgcatt ccatcattca atataattag aaaagataga gatattcctt      2040
     ttgggggagt tttgattgga attcgcaatg gtattgaatt taaatatatc aatttatcat      2100
     tgaatgtaca ttttgaatat attattattt ctgtaaaaca tacagattat cattttcata      2160
     ttatttgttt gtatattcct cctaatgtaa atttttcatt atctgaattg aaaatggttt      2220
     tagatagtgt tcctcatcct ttttatattt tgggtgattt aaatgcccat aattttgctt      2280
     ggggtagtga taaaattgat ggtcgtggat cattaatatt ggatttgatt gatgaatata      2340
     atttaaacat tttaaatgat ggatcgttca ccagaattgc tgttcctcca ttacaaaatt      2400
     catgcattga tttatcttta tgttcaaata atttatcttt taggtcaact tggagtataa      2460
     tcaatgatcc aaataatagt gatcatcttc caattttgat tcgaatgagc cattgtatgc      2520
     aaaacaatca tcaagtaaat tcttctattc ctgattattc aaaaaatgtt gactgggtta      2580
     aattttcgga tttaatttct ttttcactta ttaatcttaa agattcaaat actccaattg      2640
     aaaattacac taaattcatc aaaattttgt tcaattgctt acttaaatct cagaaaaata      2700
     aaattgtttg caataataaa aaaaataaac gtcctacatt ttggtgggat aatgattgtt      2760
     caattgcttt aaaaaataaa tcggaagctt ttaaaaaatt tcgtcgttta ggatctagag      2820
     aaaattattt cttatattgt aaagcagaag cttggtttac ccgtaccaca aaatttaaga      2880
     aaagaaatta ttggaaamat tttattgaaa accttgacag agacacttca ttatccacat      2940
     tgtggtctgt agcaagaaat ttgagaaatt atgataattc ttctcctgtt ttaatggagt      3000
     attctgataa ttggattgat caatttgcat ctaaaatttg tccagatttt gttcctcaat      3060
     ctattaattt tagaacaaag caatcgatta attattttcc agagctttgt tcaccatttt      3120
     cattagaaga attggatttg gcattatcta ttacaaataa tactgcacca ggtattgaca      3180
     atattaaatt tatcgtactt aaaaatttac cctatgaagg gaaagttcat ttacttgcaa      3240
     tttacaattc atttctttta caaaatgtta ttccattaga ttggcgttca gttaaagtag      3300
     taagcatact taaaccagga aaagatgctt cattggctga tagtcgtaga ccaataagtt      3360
     tactatcatg tcttcgtaaa cttatggaaa gaatggtttt aaatcgtctt gagatatggg      3420
     ctgaacataa taatatttta tctccatgtc aatttggttt cagaaaagga cgtggtactc      3480
     gtgattgtac agcacttttg gcttctcaaa ttgaacttgc ttttaataaa aaacaggata      3540
     ctatttctac ttttttagac gtgtctggag cttatgattc tgtacttatt gatttgcttt      3600
     ttaataaaat gaattcttat aaaattcctt taattttatc caatttcata tacaacttat      3660
     tttcattcaa aattatgcat ttctatcaca atgggtcgtc taaatttact cgtaatagtt      3720
     attttggcct tcctcaagga tcttgtttga gtcctttttt gtacaattta ttcacatgtg      3780
     atttttcatc tgttatccca aatggttgtt ttttagttca atttgctgat gataatgtta      3840
     tttccgtaag tggatataat agagaaataa tacgtcatta tatgcaaatt tgtttagata      3900
     atattgattc gtgggcttac gataatggtt ttacgttttc agtgcaaaaa actaaatata      3960
     ttatattttc acgtaaacat tcctcagtaa gtgtagattt atttcttaat ggatatgaaa      4020
     tcgaacaagt atttgaatac aagtatcttg gtatttggta tgattcaaaa ttaaattgga      4080
     actttcaaat taaatacatc cagaaaattt gttctaaaag gattaatttt cttcgtacaa      4140
     ttactggtac ttggtggggt gctcatcctt ctgatatgat tattctttat aaaactacaa      4200
     tacgctcagt tttggaatat ggttgtttta cttttggttg tgccactcaa actcattttt      4260
     ctaaacttga aaaaattcaa tttcgttgtt taagaatttg tttaaaatta atgaattcta      4320
     ctcatactaa atctgttgaa attttggcag gagtggttcc actcagaatt cgttttcatg      4380
     aattaaattg taaatttcta agtcaatgtt tcacaaatca gcatcccctt attcaaattt      4440
     taagtgattt acacggaata aatccttcta gtaaaatgtt aaactcattt aatcattgtt      4500
     ctaccgaaaa catattacct ggttttccaa atacatttta taattgtgat attaatgtac      4560
     attcttttca gacctttgtt gataaatctt tacattggga attaaatcaa ataccaagac      4620
     atatgtgtgt tcgatatgcc aaattatgtt ttgagcgaaa attttgtggc ttcgaccaaa      4680
     aatttattta ttacacggat ggatcattaa ttcaaaatag tgcaggtttt ggagtttata      4740
     atattgatgt agtccatttt cacaaattga aatctccttg ttctattttt gtagctgaat      4800
     tgatagcatt gtacttcaca tgtaacataa taaaggatca tcctccaaat atgttcgtta      4860
     tttgtactga tagtttgagt tgtatcaatt ccatcgaatc ttcaaaattt aattttaaaa      4920
     cccattattt aattttattg atacgaaaat tgttatacga tttgcattct caggggttta      4980
     taattaaatt tgtttgggtt ccagcccata gtaatatatt tggtaacgaa caagcggatt      5040
     atttagctaa actaggagct actcgcggaa ttatttatga acgaaatgtt tttcattcgg      5100
     aatattatgc taaaatcaaa agaaatgctt tagattcttg gcaaattgat tgggattcta      5160
     gtgataaagg tcgatggtgt cattccattt ttccaattgt ggatgaaagt acctggttta      5220
     aaaaactgtc tgtcggaaga aatttcattt gcatgttttc aagacttatt tctaatcatt      5280
     atatttgtaa tagtcattta tatcgtatta acataattga ttcaaattta tgtgattgtg      5340
     gagaatctta tcaagatatc gatcacatag ttttttattg caaaaaatat attttgccta      5400
     ggaaaaaaat aatagaaaaa tacaaaagtt tagaaattac agtacctata tctgttcgtg      5460
     atattcttgg tagcaaatcg cttcctatgt taaaaatttt atacaacttt ttcagagata      5520
     ttagttatat tgtttgatac tgctttgctt tttatctctt tcgtttcaga aatcaagaaa      5580
     ataaccttcc cttgtaccct gcaataatcc tccctttttg gttacttcct tttcaagaat      5640
     tcggctctga tatggatcac ttccggttga gcctttagtt ttaagattta tttttgtaac      5700
     gtaataagaa aagataaaga ggttttgtgc ccttttgaga acgatttcca attgatatca      5760
     ctcaaagggg tttttccctc tttcaaaatt tttagttcaa taaataaata aataaataaa      5820
     ta                                                                     5822
//
ID   I-6_BTa     repbase;    DNA;    INV; 6161 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6161
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 699-699 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           215..1876
FT                 /product="I-6_BTa_1p"
FT                 /translation="MHDLSSAPESHGGTLHGPPGDPGSNPSNTSTSLPNPQ
FT                 TTSITHINANSSSTFDPSRKAFIVKDKSSLRYQPNSPAPFIVAIAKEGIGN
FT                 KHPTLIGELFYKNKVEGIKXISRVNKDIIXVELISKSYANNLVDKQTSLIP
FT                 YDHFSCYIPLKYTTRRIIANNVHHELDIDSIGEFLSEKYDNIISVRRIFRK
FT                 NEDNALIPTSKLDILWQGSTMPDFLYIFYAKCNVTPYIYNVTKCLNCLNYG
FT                 HRAEYNGNLTCKSQKRCQKCATFHVAQDICPNPVKCFHCSENHLTFSPVCS
FT                 ELIKQKNIKEIMAQRNISFAVALEIFNVQQTETSTSNINERIQNIHKNSMN
FT                 NERNSLEVVQAANFPPVNNSFSNLAEPMDVVNNYRYSLDDLRRPYADVVAS
FT                 PSPTRKKSKHSFDDSLPSAEWIKKNIGVTGESVNTLSPSPRMANSSPLKPS
FT                 QPQSSLPLSNSSKTNNNVKNSSSTTSVLTTESSSSTRNQLSNLTSHNALPV
FT                 QEPNKPNQKPQKTPPASLTCPVNKNSXQSNKSSQRLPPPNTTNIDNPAPSI
FT                 HNTTQPK"
FT   CDS           2022..5780
FT                 /product="I-6_BTa_2p"
FT                 /translation="MPNTFQVVIPPNFSLLTWNIHSLLSNDTDLRLIIRDH
FT                 DPDIILLSETWLKPNIIKKFPGYNCYRDDRDDGYGGLVSLIKTKYTSYPIT
FT                 LDNRXLLTKRIETQAFKVNLDNNLXLFFLNIYIHPESQFTKTDLTNFLSTN
FT                 NLTNKPLFMGGDFNAKHPMWGYPXSDNKGNTLVELAEDLELFNINSLCPQP
FT                 TRKTSPTQEPSYTDIAFISDVLTQTLEWEALPTGGSDHYPCXYIFNRQVNS
FT                 PLLPSTNSLNAAPFTPSHRLKDWSSFRKIQDSLLTEPLYTYEEFINISLKA
FT                 HSLSIEKEIQLXDSKESPGLPLSLREKKKKFKKIPWWDEQCQRLKNKRDLL
FT                 AKLYKTNASMELFLEYKRLCAEFKLLIKKNKKKQWKLFTESLNHNTPTKVI
FT                 FEKVKLLKRARIPFINSKEDWVDDFLNTLTPDSTFYPQWSEQTTFGDSFEK
FT                 FSIEELKLAISKIKKKSPGLDMVEVEFITKSSTKAQLILLQIFNEILSTKV
FT                 IPESWKEIKIFTQSKKDVNPNSASDYRPLGIVSVMRKLFEKILLGRLELFV
FT                 ESYNKLSPFQFGFRKSKNIYHNLFNISCQAYKAIGEKMFMPTIFLDIKNAY
FT                 NNVNYSILYKKLIQIGLNQDLAKIIFNLISNNKILISYNFKTWGPRISPKG
FT                 LTQGGILSPLLYLIYSMDLHKILSFSSISEYADDAVIYILNHNLQEALNKL
FT                 ASDFIKVYNTIIDLGLDLSFHKIKIIIFTNRRIPKNLTIQLLNYEFPVSVS
FT                 VRYLGLIYNQKMNWQEHLRHIKSKVESKLNFMSFLLGANWGANQNISRLLF
FT                 LNMIRPILDFGLPIYCNNFSIMDQLNKIQNKCIRKVLSALSSTPTNNLNAE
FT                 ASIPPIQYRFNYLTDKTFLKAMSFQQNSIINDTKMLESSVLNSPWWSNKQY
FT                 PLFLYRWHAIKKFEKDLIKFSKPPNLSXSPSFQFFQPNVDFLNIKNKNSIM
FT                 PYIIQTEFLAHVNLKYPNYLHYYTDGAKTDTYTTSVFVVNDFFKVFSLSTY
FT                 SSIFDAEAFAISEAIKHITLHNYYNVLICTDSHSVLTNLINQASDLHPTIS
FT                 IYDIKKALFNFQNLNISLLWIPSHVGIPGNERADQLTKLLPLAHKVEGKLY
FT                 YKQLIPFIKKQSFLDWAKEWHDCTWKGQRLKTLMPHLSXRPWFSKFHWNRK
FT                 DIKNLIRARIGHGLYPSHLHRINLRASDLCNCGLTGDLNHIFFQCPLLQHD
FT                 AFFKNLINANYFPPFNISFILHNPLPSIYKIITXFLNQNNISL"
XX
SQ   Sequence 6161 BP; 2025 A; 1498 C; 828 G; 1784 T; 26 other;
     gtccttagta catacacgtt gttcggaatc tactatttag gcckttgamc aatttctctc        60
     tcttcaatag ttttgcttag cttctttcat caaagtaatc tttagtttag ccattgaagg       120
     cattttttck tttattttcc ttaatttctc agttctgtga tgaatttgtg gcacattgtg       180
     gtaacctaac ctaacttctt atgtaagtcc taccatgcat gacttaagtt cagcccccga       240
     atcccacggg ggaacactcc atggaccccc tggagatcct ggctcaaacc cctctaatac       300
     ctctacgtct ttacctaacc cacaaactac ctctatcact catataaatg cgaatagctc       360
     tagtacgttt gatccctcta gaaaggcatt cattgtcaaa gataaatcta gcctgagata       420
     ccagccaaat tctcctgctc ctttcatcgt agcaatagca aaagaaggta taggaaataa       480
     gcacccaacc ttaattggag aacttttcta taaaaataag gttgaaggaa ttaaakctat       540
     ttccagagtg aataaagaca ttattmatgt ggaactaatc tctaagagct atgccaacaa       600
     ccttgtggac aagcaaacct ctctcattcc gtatgaccat ttttcctgct acattcctct       660
     caaatatacc actcgaagaa tcattgcgaa taatgtacac catgagttag acattgatag       720
     tataggtgaa tttcttagtg aaaaatatga caatatcata agcgttagaa gaatttttag       780
     gaaaaatgag gataatgcat taatcccaac ctctaaacta gacattcttt ggcaaggttc       840
     gaccatgcct gatttccttt atatttttta cgctaaatgt aacgttactc cttatatcta       900
     caatgtaacc aaatgcctaa actgcctaaa ttatggtcat cgtgccgagt ataacgggaa       960
     ccttacttgt aaaagccaga aacgatgtca aaaatgtgct acttttcatg tagctcaaga      1020
     catatgtcca aacccggtga aatgtttcca ctgttccgaa aatcacctca ctttctcccc      1080
     agtatgctct gaactaataa aacaaaaaaa tattaaagaa ataatggctc aacggaacat      1140
     atccttcgca gtagcgttag agatcttcaa tgtacaacaa acggaaacct caacttcaaa      1200
     cattaacgaa cgcattcaaa atatccataa gaactcaatg aataacgaaa gaaattccct      1260
     tgaggtagtt caagccgcta attttcctcc tgtaaataat tctttctcta acttagctga      1320
     acctatggat gtagttaata attataggta ttctttggat gacctgagga gaccatatgc      1380
     tgatgtagtg gcctccccct ctcccactag gaaaaaatca aaacactcct ttgacgactc      1440
     tctcccttct gccgagtgga tcaaaaaaaa tataggcgta actggggagt cggtgaatac      1500
     tctttccccc agtcccagga tggcaaactc tagccctttg aaaccctcac aaccacaatc      1560
     ttccctwccc ctctcgaact cgtcgaaaac aaataacaac gtcaaaaatt cttcttctac      1620
     cacttccgtc cttacaaccg aatcctcttc ttccactaga aaccaacttt caaacctcac      1680
     ttcacataat gctctcccag tacaagaacc taacaaacca aaccaaaaac ctcaaaaaac      1740
     ccctccagcc tcactaacct gcccagtcaa taaaaattcc wtacaatcaa ataaatcttc      1800
     tcaacgcctt ccccctccta acactacaaa tatagacaac ccagctcctt ccatacacaa      1860
     tactacgcaa ccgaaataga acaaatctta actttcggac taaaacwttt taattwcact      1920
     ttatctgttc aattaaactg ttccaatttg tgttctactc attcttctta cttctcccat      1980
     ttattttccc ttttttgtta ctctgttatt tcttaaattt tatgcctaac acttttcagg      2040
     tagttatacc gcctaacttt tccctcctta cgtggaacat tcactcctta ctctcgaacg      2100
     ataccgacct taggttaatt attcgagatc atgaccctga cattatctta ctttcagaaa      2160
     cttggttaaa accaaacata attaaaaagt tcccaggcta taactgctac agagatgacc      2220
     gtgatgacgg ttatggtggc ctagtctcgc tcataaaaac caagtacacc tcttacccaa      2280
     tcactttgga caatagasat cttcttacta aaagaattga aacccaggcg tttaaagtaa      2340
     acctggacaa caacttagaw ctattcttcc taaatattta catccaccct gaaagtcaat      2400
     tcactaaaac tgacctgact aattttctat caactaacaa cctwactaat aaacctctgt      2460
     ttatgggagg cgacttcaat gccaaacatc ctatgtgggg ttatccgcwt agtgataaca      2520
     aaggcaatac cttggtggaa ctagccgaag atcttgaact ttttaacatc aactcactct      2580
     gccctcagcc cacaaggaaa acctcaccga cacaagagcc tagctatacc gatattgcgt      2640
     ttatctcaga cgttttgacc caaacccttg aatgggaagc cctacctact ggaggcagtg      2700
     atcactatcc atgtcwatac attttcaaca gacaggtaaa ttcccccctt ctcccctcta      2760
     ccaattctct aaatgcggct ccgttcacac ctagccaccg acttaaggac tggagtagtt      2820
     ttcgtaaaat ccaggattct ctccttactg aacctttata tacctatgaa gaattcatca      2880
     acataagtct aaaagcacat tctctaagta tcgaaaaaga aatccagtta mtcgactcca      2940
     aagaaagtcc cggcctccct ttgtcwctga gagaaaagaa aaaaaaattc aaaaaaatcc      3000
     cttggtggga cgagcagtgt caacgattga aaaataaacg tgacctctta gccaaattat      3060
     ataaaactaa cgccagtatg gagcttttcc tagaatataa aagactatgc gcggaattca      3120
     aactgctcat caaaaagaac aaaaaaaaac aatggaaatt attcacggaa agcttaaacc      3180
     ataatacccc cacaaaagtt atcttcgaaa aagttaaact cctaaaaagg gctcgaatac      3240
     cctttattaa ttcaaaagaa gactgggttg atgacttttt aaataccctt actccagact      3300
     ccacattcta tcctcaatgg tccgaacaga caaccttcgg agattccttc gaaaaatttt      3360
     ctattgaaga gctcaaacta gccatatcca aaatcaaaaa gaaaagccct ggcctagaca      3420
     tggttgaggt cgaattcatc acaaaatcct ctactaaagc ccaacttatt cttcttcaaa      3480
     ttttcaatga aatactttcc acaaaagtca ttcctgaatc ctggaaagaa attaaaatat      3540
     ttacccaatc aaaaaaagac gtaaacccga actctgcctc agattacaga cctttaggaa      3600
     tcgtgtcagt catgagaaag ttatttgaga aaattctgtt aggaagactt gaacttttcg      3660
     tagaatccta taataaatta tctccattcc aatttggttt tagaaaaagt aaaaatattt      3720
     atcataactt attcaacatt tcttgccaag cctacaaggc cataggtgaa aaaatgttca      3780
     tgccaaccat ttttctggat ataaaaaatg catacaacaa tgtaaattac tctattctat      3840
     acaaaaaact tattcaaatt ggtcttaatc aagatctggc caaaatcatt ttcaatctta      3900
     tatccaataa caaaatatta ataagctata actttaaaac atggggtcct aggattagtc      3960
     caaaaggcct cacacaagga ggaattctga gcccgcttct atatctgatc tattcaatgg      4020
     atcttcataa aatcttgtcc ttctcttcta tatcagaata tgcggatgac gcggttatat      4080
     acattttaaa tcataatctc caagaagctc taaacaaatt agcctctgac ttcattaaag      4140
     tatataacac aattatcgat ttgggccttg atctgtcgtt tcataaaatt aaaatcataa      4200
     ttttcactaa ccgtagaatt cctaaaaacc taactataca actcctaaac tacgagtttc      4260
     cagtgtcagt gtctgtaaga tacttgggct taatctataa tcaaaaaatg aattggcaag      4320
     agcatcttcg tcatattaaa agtaaagtag agtctaaact gaacttcatg tccttcttac      4380
     tcggagcgaa ttggggcgct aatcaaaata tttcaaggct cttattcctt aatatgatca      4440
     gacctattct agactttggt ctccctattt actgtaataa cttttctata atggaccagt      4500
     taaataaaat acaaaataaa tgtatccgta aagtattgag cgcattatcc tctactccta      4560
     ccaataattt aaatgctgaa gcatctatcc ctccgatcca ataccgattt aactacctca      4620
     ccgacaaaac ctttctcaaa gccatgagct ttcaacagaa ctctataatt aacgacacca      4680
     aaatgctgga atcttcagta cttaacagcc cttggtggtc aaacaaacag tatcctttat      4740
     tcctttaccg ctggcacgct ataaaaaaat ttgaaaaaga cttaataaaa ttctcaaagc      4800
     ctccaaattt atcagwgtcc ccatccttcc aatttttcca acctaatgtg gatttcctaa      4860
     acatcaaaaa taaaaactcc atcatgccct acattatcca aacggaattc ttggcgcatg      4920
     tgaatctcaa gtatcctaac tatttacact attatactga cggagctaaa acagatacct      4980
     acacaacctc agtctttgtt gtcaatgact tcttcaaagt gtttagtctc tctacttact      5040
     cttccatttt tgatgctgag gcatttgcta ttagtgaagc tatcaaacat ataactcttc      5100
     ataattatta caatgttcta atmtgcacag actcacatag tgtactaacc aacctaatca      5160
     accaggcttc cgaccttcat cctactatat ctatatatga cattaaaaaa gcccttttta      5220
     acttccagaa cctcaatatc tccttactct ggatccctag ccatgtaggc attccaggta      5280
     acgaaagagc tgaccaactg acaaaacttc ttccacttgc tcacaaggtt gaaggaaaac      5340
     tctactacaa acaactaatt cccttcatta aaaaacagag tttcttagat tgggccaaag      5400
     aatggcacga ctgcacctgg aaaggccaaa gactcaaaac tttgatgccg catctctctw      5460
     cccgcccttg gttctccaaa tttcactgga atagaaaaga cattaaaaat cttattagag      5520
     ccagaatagg acacggtcta tatccctccc atctacacag aataaattta cgagcttctg      5580
     atctgtgcaa ttgcggacta actggcgacc tcaaccatat cttctttcag tgccccctac      5640
     tacaacacga tgccttcttt aaaaatttaa ttaacgctaa ttacttcccc cccttcaata      5700
     twtcgttcat tcttcataac cctctccctt ctatctataa aataatcacc gakttcttaa      5760
     accagaataa tatctcctta taaaagcccg taatgatmac aagcccttca tcacccaatt      5820
     ctcctccccc ctagctattc ccactcccgc cctttaagta catccatcta tctctctaat      5880
     cctacaaaac cctmcaaatc tacctttaca cctaatgttc acttagtatg ttttccagga      5940
     cccagtctac cataggttta gtcgccacag tgggtcttgt ggcgtgaaga tggtgttggt      6000
     accccctcag tcccctttgc atatctactc cctmtccccc cacctaactc tctcctcaac      6060
     attttaacca cttacctacc acaatgtgtc tatagatggc tgtgggctcc acaccggagc      6120
     atgaagccaa taaascatca wagaagaaga agaagaagaa g                          6161
//
ID   I-6_DBi     repbase;    DNA;    INV; 4918 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4918
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 930-930 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~82% identical to I-1_DT.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1220..4912
FT                 /product="I-6_DBi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTISILQWNMNGYLNHYKQLQLLIKKYTPQIICLQET
FT                 HLIPYKNFPTPINYTIYTLNSAVNASGGVAILVHNSIQHTEIHLPQDFESL
FT                 CSKIQSKYTFNIICSYIPPRQHFTCNNLENVYSDLSSPTLITGDFNSWHTL
FT                 WGSPRNNKKGNTLSQFIHQSPLTLLNDGSPTHFSTHNTLTHVDLTLASATL
FT                 ALESVWFIESSTFGSDHFPIITTLFDTTSTPTFLPKFKLDDANWPKYVEAS
FT                 NYFHLQRPISHNLNKEAANLKRIVHQSANCSIPQSISNPHSKRTVPWWNTH
FT                 LETLKKSKNAYFNILRRNISNTNIINYRRANALLKREIKIAKRNSLEIFTS
FT                 EINPNSSTSKIWSNLRRFCGLRPRIGIHCIAQPNSPNKITNSLEIANELCS
FT                 FWSSESSDDNFSATFTHHKNNILPIHQNYQPSTSALKIDSPITSLELNIAL
FT                 SKQKGKSPGLDRVSYQMLKNLHPAVKLRLRDHFNSIFNSFIPQHYKLSKII
FT                 PIHKPNTDKTSLNSYRPISLNSCFAKTLDKIIANRLWWFVSYNNSIDSRQT
FT                 GFRKGKSISDNLLVLDHLISSSLSTKNHLSVISLDFTKAFDKIGIHTVVDE
FT                 LQSWKIGPKIINYCINFMTNRKIKVYANNHFSFTRPQHNGXPQGSPLSVIL
FT                 FLIAFNKLNLVILNHKQFNFCAYADDYHIFKKINKDTQINIDPLLNDIQTW
FT                 CEYSGAVLSLNKCKHLHFCKKHSCQLRISNTLAPIDNTNTLKILGITFNKK
FT                 YNWADHVASLVSSLSNRLNIIKCISSNKFNCNHLTILNIIKALILSKIDFG
FT                 IPFYGNCTTSTIKPIKSIYHSAIRSALGAFRTTPIHNILFESNMMPIDIRT
FT                 KFCISKTIKPILLSHNSPLKSIVTKILKRKKRIPKIPSVVHRALNFAVELG
FT                 LPTKPPISKKPVNPPWSDVSNLIDTTLRKLPKATTPQLVYQQKFLEFKNKY
FT                 PTSTFIYTDGSKISGATSFSVVSDDISQQHLLPYYSSIFSAEIIAIYNAVL
FT                 LAQHSPNSSVICSDSLSALNAIANPSNNSFYPATIRQILLKNVNKITIKWI
FT                 PGHCGIQGNEVADETAKNAFALPLTFYDNLNISDILKQIKKHYKELQTSLF
FT                 NQTNTYYKSNNTDQNNIYNYGRLQADLFIPRHTFTKIVRLRLGHTNLTHSY
FT                 LFTRPPTRPSCPLCNNEIRTPQHILTECSYLDSIRSSLFTSTNPLQSIFIP
FT                 SAPQITKIIKFLSYNNIINEI"
XX
SQ   Sequence 4918 BP; 1707 A; 1370 C; 627 G; 1211 T; 3 other;
     cagttcaatt tcggcagtcg atacgaacgg ttgtgccatt cttgtgttct ctcaagtaat        60
     aaaccttcaa tcttccgaat cgaaccaccc cccgcgaccc cgcgcctacc tattgatttc       120
     ttatcagcaa ttcaaatcag caactactgt cttcgtcgcc aaaaaccgtc gcgtagtcaa       180
     ctgaagacga aaaaatgctt gacccccctg gaaacgacca cccgcacctg acgggaagta       240
     cctaattatc gctcgatccg acaacaacaa cgacggttcc ctagcaaagg tctcgccgtt       300
     tacactgaag aaaatcattg acgtaaccgt tggaggagta gttgaagaat gcaagaaact       360
     cagagatgga aatattttga tcaaaaccaa aaaccagacc caaacgggat tattaataat       420
     aactttttcc tacaacatcc cggaatctat ttacgtcggt ttcgaacatg ttaaggtacg       480
     cactacatcc cagcggtaat gcgttgcttt aactgcctgc aaatcggaaa cccatccaag       540
     taccgcaaaa aagccgaact atgcctttct tgcagtcaac cagcccacat caatctcgaa       600
     ctgggtgast catgcaccaa caactaagtt gcatcaactg cacggacaga aaatacccca       660
     acaacaacca ccatgcaaga gataaggtat gtcctgccct tatcacctac aaggaaatcc       720
     aagcaatcaa ggccattcaa aaagtaaaca accgcgaagc ttggaccatt tataagacaa       780
     gacaccaaca tgacggatcc ctctactcta cagtggctag tcctaacmac ggcaggccgc       840
     aacaacaagc cgcaaaaacc tcctcaacag acttcacacc accgccgaca acaacaaccc       900
     aacaacaaga tacaacggac aataagaaga acggagcaga tcaaccctcc tgcagtaata       960
     ttcgaccttc aattcaatat gaaagcgagg aagagatggc tacagcttct gacacctcgc      1020
     aaccacctac taacgataag tctaatttca ctactaaaat ctacccttcc aaactatcca      1080
     aaagagagaa aagattcgtt aaacaagatt atatgctaac taggtccaaa attaaggcca      1140
     cagtcaactc caccattaca aaaacaacaa actaaatcct aagttacact ttaagccatt      1200
     acattaccaa ctaaatatta tgactatttc aatactacaa tggaatatga acggctactt      1260
     aaaccactac aaacaactcc aactcctgat aaaaaaatac actccacaaa ttatatgcct      1320
     acaagaaact cacctaatac cctataaaaa ctttcccact ccaatcaatt atactatata      1380
     tactcttaac tctgctgtca atgcctctgg aggcgttgct atcctagtac acaactcaat      1440
     tcaacacacc gaaattcatc ttccacaaga ctttgagtca ctctgctcta aaatccaatc      1500
     caagtatacc tttaacataa tctgctctta catcccacca agacaacatt ttacatgcaa      1560
     caaccttgaa aatgtataca gcgatttatc ttcccccacc ctcattaccg gggacttcaa      1620
     tagctggcat acgttatggg gttcacctag gaataacaaa aaaggaaata cactttccca      1680
     atttattcac caatctcctc taaccctact aaacgatggt tctcccacac atttcagcac      1740
     ccacaacact ctcacacacg tcgatctcac tctcgcatct gcgacccttg ccctcgaatc      1800
     cgtttggttc atcgagtcaa gtacgtttgg aagcgaccac tttccgatca tcacaacact      1860
     atttgacact acttctaccc ctaccttctt acctaaattc aaattagacg acgcaaactg      1920
     gcccaaatac gtcgaagcta gtaactactt ccaccttcaa cggcccataa gccacaatct      1980
     taataaggaa gccgctaacc ttaaaagaat agttcaccaa agcgccaact gttctatccc      2040
     acaatccata tctaatcccc attctaaacg cacagtacca tggtggaaca ctcacctaga      2100
     aacacttaaa aaatcaaaaa acgcttactt taatatcctt cgacgaaaca tctccaacac      2160
     gaacataatt aactatagaa gagccaatgc ccttctcaaa cgcgaaataa aaatagctaa      2220
     acgtaactca ctggaaatat tcacctccga aattaatcca aactcttcga cctccaaaat      2280
     ttggagtaat cttcgaagat tctgtggact ccgacctaga atcggtatcc actgcatcgc      2340
     acaaccaaat tcacccaata aaataacaaa tagcttagag atagccaatg aactatgttc      2400
     cttttggtcc tccgaatcaa gcgacgataa cttctcagca accttcaccc accacaaaaa      2460
     taacattcta cccatccacc agaattacca gccttccact agcgcattaa aaatagattc      2520
     tcctatcacc tcccttgaac tcaatatagc cctgtcaaag caaaaaggaa agtccccagg      2580
     tctcgatcgt gtctcctacc aaatgctaaa gaacctccac ccagcagtaa aactcagact      2640
     acgtgatcat tttaacagta tatttaacag cttcatccca caacattaca aacttagtaa      2700
     aattatacct attcacaaac ctaatacaga caaaacatcc ctaaactctt atcgtcccat      2760
     atcccttaat tcatgcttcg ctaaaacgct agacaaaatc attgcaaatc ggctatggtg      2820
     gtttgtttcc tacaacaact cgatcgatag tcgtcaaact ggatttcgaa aagggaagtc      2880
     aatatcagac aatctactgg ttctagatca cctgatatcc tcttccttat caacgaagaa      2940
     tcacttatca gtgatctcac tggattttac aaaagcgttt gataaaattg gaatccatac      3000
     tgttgtcgac gaactgcagt catggaaaat cggccctaag attataaatt attgcattaa      3060
     tttcatgacc aacagaaaaa tcaaagtcta tgccaataac catttttcat tcacccgccc      3120
     acaacacaac ggcawtcccc aaggttcgcc actctcagta attctgttcc tcatcgcgtt      3180
     taacaaacta aatctagtta tccttaatca caaacaattt aacttttgcg cctacgccga      3240
     cgattatcac atatttaaaa agataaacaa agacactcaa ataaatattg accccctcct      3300
     taatgatatc caaacttggt gtgaatactc cggcgctgtc ctctcactca acaagtgcaa      3360
     acaccttcat ttttgtaaaa aacactcctg ccaacttcga atatccaata cacttgcacc      3420
     aatagacaac actaatacgt taaaaatact aggaataaca ttcaataaga aatataattg      3480
     ggcagatcac gtagctagcc tcgtctcttc cctctcaaat cgcctcaata tcataaagtg      3540
     catatcgagc aacaagttca actgcaacca cctcaccatc ttaaacatta taaaagcgct      3600
     tattttgtca aaaatcgact tcggcatacc cttttacggt aattgcacaa catccacaat      3660
     taagccaatt aaaagcattt accactctgc catcagatca gctctaggtg cttttcgaac      3720
     cacccctatc cataacattc tcttcgagtc taacatgatg ccaatagata tccgaaccaa      3780
     gttttgtatc tccaaaacta taaaacccat cctactctcc cataactctc cgctaaaatc      3840
     gatagttacc aaaatattaa aaagaaagaa gcgaatccca aagattccat ctgtcgtcca      3900
     cagagccttg aatttcgccg tagaacttgg tttaccaacc aaaccaccca tttctaaaaa      3960
     acccgttaac ccaccttggt cggatgtatc caatttgata gatacaactc tgcgtaaact      4020
     accgaaagcc accactccgc aactagtcta ccagcaaaag tttctcgaat tcaaaaacaa      4080
     atacccgacc agcacattca tctacaccga tggttccaaa atttcaggcg cgacatcctt      4140
     tagtgtagta tccgacgaca taagccaaca gcacttacta ccatactata gctccatctt      4200
     ctctgccgaa atcattgcta tctacaatgc agtcctttta gctcaacact caccaaactc      4260
     ctcagtaatc tgttccgact ccctgtcggc gttaaatgct atagcaaatc cctccaataa      4320
     ttccttctac ccagccacaa tcagacaaat tctgttaaaa aacgttaaca aaataaccat      4380
     taaatggatc cctggtcact gcggcataca aggcaacgaa gttgctgatg aaaccgccaa      4440
     aaacgccttt gcattgcccc tgacattcta cgacaacctg aacatatcag atatcctaaa      4500
     acaaattaaa aaacactata aagaactaca gacttctctt tttaaccaaa caaatacata      4560
     ttacaaatca aacaatacag atcaaaacaa tatatacaat tatggtcgac tccaagccga      4620
     cctattcatc ccccgtcata ccttcacaaa aattgtacgt cttcggttag gacacactaa      4680
     cttaacccat agctaccttt ttactcgccc tcccacaaga ccctcttgcc ccctatgcaa      4740
     caacgaaata agaactcctc aacacatcct aacagaatgt tcctatctcg attccataag      4800
     atcgtctctc ttcacttcca caaacccctt acaatccata ttcatcccca gcgcgccaca      4860
     aataacaaaa attataaaat tccttagcta taataatata attaatgaaa tttaataa        4918
//
ID   I-6_DBp     repbase;    DNA;    INV; 3176 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3176
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 706-706 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated. The consensus is ~96%
CC   identical to that of I-9_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2979
FT                 /product="I-6_DBp_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="XFILKKANWEQYETLTXKNNGIFPTSPNXNKEAAQIN
FT                 KIILHSANISIPQTSVNTKPYKVPWWNKKLAQLKKEKQLAWKALNRNINLT
FT                 NIINYRRLNAKYKFEIKKSKIEASRSFTSTIQPETPSSKIWSNIRRFCGLN
FT                 PSKQIHAIHNPKNNTTTTDTLEIANSLSQHFSELSSDLNFSDEFRNNKYKI
FT                 NTTNYTPTSTAKTIEENISHLELIAALQTLKGSTPGLNRISYEMIRNSSLT
FT                 TKNRIKNLFNQIFDSHIPQAYKISLIIPILKPKTDKTNISSYRPISLNCCL
FT                 AKTLDKIIAKRLWWFVTHNKLLNTNQFGFKKGKSTSDSLLYVDHLITKSKR
FT                 HTSLVTLDFSRAFDRVGVHTIIDQLQEWKTGPKIINYVKNFMLKRKIIVRV
FT                 GPHLSNSLPLSNGIPQGSPISVILFLIAYNKLSNVISLHKEIKFNAYADDF
FT                 FLIINFRNNKHLNFNLDNLLHDISSWCSYSGASLSLAKCQHLHICQKXNCT
FT                 STISCSNTPIKQVTALKILGITINSKYKWDTHIKSLLPSLHQKLNIIKCLS
FT                 NLKFNCNTQTLLHVAKATVIAKIEYGLFLYGQAPKSVLNKLKTPFNTAIRL
FT                 ALGAYRTTPINNLLYEANILPLEQKRDLQTAKLTKNLIFSKDTPIHKLVKQ
FT                 RKSKKNTSTIDRTINLCQALNLPYEPVKLHKYQPPWDLPNLIDTTFRAHKK
FT                 QTTTPDTYMKLYEHTKDSHKTHKFIFTDGSKMNSTISYAITTDTYIIKYGI
FT                 LPPHSSVLSAEIIAILVAIDQVKSTRGKFMICSDSLSAIDAIRNTNNNNFY
FT                 PNKIRSLLTKLAPKIKILWIPGHVGIAGNELADQTAKSTCSMPLIYTPNIN
FT                 LTDINRHLKLEFLTRNKLNIEHCNQWYKNINKDNSNIDNYCRSFHPKSSRL
FT                 DQIKIIRLRLGHTKLTHEHYFNQNQTSPCPFCQGDNTLPHLLNSCPSLLPT
FT                 KLSIFKNTNPLNLLNELNTDNLEKILIFLKTSNLYHKI"
XX
SQ   Sequence 3176 BP; 1281 A; 827 C; 352 G; 711 T; 5 other;
     ttktttatat taaaaaaagc maactgggag caatacgaga ctctcacaca maaaaataac        60
     ggaattttcc ccacttcacc aaacktcaac aaagaagccg cacaaattaa caaaattata       120
     ttacatagcg caaacatttc catcccacaa acctcagtaa atacaaagcc ctacaaggtt       180
     ccctggtgga acaaaaaact ggcacagcta aaaaaagaaa aacaattagc ttggaaagca       240
     cttaatcgca acatcaacct tacaaatatt ataaactaca gacgcttaaa cgccaagtac       300
     aagttcgaaa tcaaaaaaag taaaatcgaa gcttccagat cctttacatc caccatacaa       360
     ccagaaaccc cttcatctaa aatatggagc aacataagac gcttctgcgg tcttaaccca       420
     agcaaacaaa tccacgccat acataatccc aaaaacaaca ctacaacaac agatactctc       480
     gaaatagcca actccctctc gcaacacttc tcagagctct caagcgacct aaacttctca       540
     gacgaattcc gaaataacaa atataaaatc aacacaacca attatacacc gacctcaaca       600
     gccaaaacta tcgaggaaaa cataagtcac cttgaattaa ttgcagcact acaaacactt       660
     aaaggatcca ctccaggatt aaacagaatt tcgtacgaaa tgatacgcaa cagctccctt       720
     accactaaaa acagaattaa aaacctcttt aatcaaattt tcgacagcca catacctcaa       780
     gcctacaaaa taagcttaat cataccaata cttaaaccaa aaaccgacaa aacaaacatc       840
     tcctcgtaca gacccatttc cctcaattgc tgtttagcaa aaacactgga caaaatcata       900
     gcgaaaagac tttggtggtt tgtgacccac aacaaacttt taaatacaaa ccaattcggc       960
     ttcaaaaaag gcaaatcgac ttcggatagt ctcctatacg tagaccatct cataacgaag      1020
     tcgaaaaggc acacctccct cgtcactctt gacttttcaa gagcctttga tcgagtaggt      1080
     gtgcacacta taattgatca actccaggaa tggaaaacag gccctaaaat aatcaattat      1140
     gtcaaaaatt ttatgctcaa acgtaaaata atagtcagag tcggtccgca cttgtcaaat      1200
     tcactcccat tatccaacgg tatcccacaa ggatcaccta tatcggtaat cctatttctc      1260
     atcgcataca ataaactctc aaacgtaata tctctacaca aagaaattaa atttaacgct      1320
     tacgccgacg actttttcct tattataaac ttcagaaaca acaaacacct taattttaac      1380
     ctagacaacc ttttacatga cataagcagc tggtgctcat attcaggggc atctctatcc      1440
     ttagctaaat gccaacacct ccatatatgc caaaaacama attgcactag caccataagc      1500
     tgtagcaata caccaataaa acaagtaaca gcactcaaaa tcttagggat aaccataaat      1560
     agtaaataca aatgggacac acacataaaa tcacttcttc catcactaca ccaaaaattg      1620
     aatatcataa aatgcctttc caacctcaaa ttcaattgca acactcaaac actactccac      1680
     gtcgcgaaag caacagtcat agcaaaaatc gaatatggcc tgtttctata cggacaggct      1740
     ccgaaaagcg tgcttaacaa attaaaaacc ccctttaaca ccgcaatccg tctagccctt      1800
     ggcgcctacc gaaccacacc cataaataac ttgctatacg aagccaacat cctcccatta      1860
     gagcaaaaac gagaccttca aacagccaaa ctcacaaaaa accttatatt ttccaaagat      1920
     acaccaatac acaaacttgt caaacaaaga aaatcaaaaa agaatacatc aaccatagac      1980
     cgcacaataa acctctgcca agcactaaac ctaccctacg aaccagttaa actacacaaa      2040
     taccagccac cttgggatct cccaaacctc atagacacaa catttagagc gcacaagaaa      2100
     caaaccacaa caccagatac atacatgaaa ctatacgaac ataccaaaga cagccataaa      2160
     acacacaaat tcatatttac ggatggatca aaaatgaact ccactatatc atatgctatc      2220
     acaacagata cttatattat taaatatggt atcctacccc cccactcatc agtactctcc      2280
     gcagaaataa tagccatatt agtagcgatc gaccaagtca aaagcacaag gggaaagttc      2340
     atgatctgct ctgactctct ctcagcaatt gacgccataa gaaacacaaa taacaacaat      2400
     ttttacccca acaaaattag atcactcctt acaaaactag ccccaaaaat taaaatattg      2460
     tggatccctg gtcatgtagg catagcaggc aacgagctag ccgaccaaac agcaaaatcg      2520
     acatgcagca tgccccttat ttacacccca aacataaatt taacagacat aaacagacac      2580
     ttaaaactag aattcctaac aagaaataaa ctaaacatag aacactgcaa tcaatggtat      2640
     aaaaacatta acaaagacaa ttcaaacatc gacaattact gcagatcctt ccatcccaaa      2700
     tcgagcagac tcgatcaaat taaaataata cgccttagac taggccacac aaaacttaca      2760
     cacgagcact acttcaatca aaaccaaacc tcaccctgcc ccttctgcca aggcgacaat      2820
     accttacccc acctattaaa ttcatgccca tcactccttc ctactaaact atctatcttc      2880
     aaaaatacaa acccattaaa tctccttaac gaactcaaca ctgataattt agaaaaaatc      2940
     ttaattttct taaaaacttc aaacctatac cacaaaattt aataataccc aaaatgtaca      3000
     taaacaaaat ttaccaacta agtagcctaa atacaacgaa caatatgtaa ttaaaataat      3060
     agacttaaat agcattaacc ttaaaagccg aaggcctcgc tgccagcgct ttaccaacta      3120
     agttagtcta gttttgcaaa cttctctatc tttaataata aataaataaa taaata          3176
//
ID   I-6_DF      repbase;    DNA;    INV; 4951 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4951
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 968-968 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4951 BP; 1822 A; 1283 C; 743 G; 1094 T; 9 other;
     cagtaccagt ctagacttcg aacagtgaag acgtgctgtc gccagtgcct cccgcgtacc        60
     cgtggttaca aaaacaattt cctaccaatt ttggtaaaaa caaaccaaag ctcaaagaag       120
     acgctgcaaa aagccaacaa caaaagttac agacaaaccg ctacatcttc ccaagtgctc       180
     tgtgcagcgg gcatcagccc caagcgcaac aacaatgtcc cggcctcccg acttgaactt       240
     cactgcacgg tgtgacaact ccatcataac cgagccaaaa ttcctcatga tcaccagaac       300
     cgacaacatc acatttgaaa aagtttctcc gttcgtcatc aagaaagtta ttgactttac       360
     ttgcggtggc gaggtggagt catgtaccaa aaccagaaat ggtaaattat tggtcaaaac       420
     caagactgca taccaagtac gtagactgtt aaatcttacg aaattccacg attttgatgt       480
     agccgtaacc gagcatgcat ctttaaatac ctcaaagggc gtaatttact ccaatgaatt       540
     acgaaatatt gaggaaagag aaatattaca agagcttaaa tctcaaaatg tcatcaacgt       600
     cgagaaaatc ctacatttta aaaacaacat gctccaggaa accggcctta taataaccac       660
     ttttgcatca agcaccctac ctgaaacaat gatgatagga tacgagagag tcaaaattcg       720
     accccatgta cctcgcccac ttaaatgtcg caactgcctc aaattcggtc atccgacaac       780
     cgccagcccg aataccacac cccagacgac caacaatgca ataagcccaa attttgtatt       840
     aattgcaaat atgacaacag cgaccaagcc aaccatagcc ctctagacaa atcttgccca       900
     gcattcataa aacaaaagga aataactact atcaaaactc ttcagaaagt ggaccataaa       960
     actgcaacag gaatttacaa tatgcgacac atccatcaac cgaccccata ctcccagatt      1020
     gcatcccaac accctacagc aacagcaagc caagcacagt tgacgaacaa cgcccaaagg      1080
     acttctctcc aagcaaccac gcataccaac cagaaccgta agattaagga gtatagcgac      1140
     ttaatcgata cccaaccgag cacctcatct aagtcaatca accaaggagc aaagatcctc      1200
     gacgaagaaa tggaaaccga acaaacactt gacacgacaa cgacccaccc gaagaagaaa      1260
     attacagagt ctgatcggaa acttaggagc caaattaaag acaaatccag ctcagtttct      1320
     aaaccttctc taaaagccaa agataagtcc gaaaaaatta agccagccaa tcacactaac      1380
     cttgcgagcg aattaaacaa gttagccaac gccaatagct cggaagaaga actataaaca      1440
     aaacaacaca gtaacaatca taatgaccct gaaacttcta caatggaaca tgaatggata      1500
     cctgaacaat tacaacgaac tgcaagtcct gattaaacgc tttactccca aaatcatttc      1560
     acttcaagaa acccacataa cgtacaccca acaaatccct attccagtta acttcaacat      1620
     tcactacwca gcctcgcaca gcccagatgg cggcgcggca attttaatac acaaatccat      1680
     acagcacaaa ttcatccctc tccagagcac agttgattcc attgcattgg aaattcagtc      1740
     tgttaaaaaa ttcaatataa tatcatccta tatacctcct aacaagaaat tcaatcaaat      1800
     ggatctccat tcaattttac caccgggaaa ctccccaaac ctaattacag gcgacttcaa      1860
     cagctggaat accagctggg gatcccctac aatcaatccg aggggaagaa tattaggaaa      1920
     attcattctg gacaacaacc tcattatcct taacaacgga caacccacgc atttctctac      1980
     acacaggacc tttacacata ttgacttggc attctgttca cctgaactta aagtatactg      2040
     cgacttcaaa atcagtgact ccctccaagg aagcgatcac ttcccaatct ccatcgaaat      2100
     tttcccgaaa aatcagagag caagtcaaaa ctttgcacaa cggttcgtaa ccagcagagc      2160
     tgattgggaa aaattcgaga tgataactga agacctgaac aacaaaatac caacatcact      2220
     taacattaat caggaagcag gtaacatcaa gaaaattatt ttgcaaagtg catacaagag      2280
     cattccacat acgagaccac ctaagacaca ccacaatgtt ccttggtgga acaaaaaact      2340
     ggatagtctg agaaaggaaa aatttaaagc ctggagaacg ttcaacagag aaatgtccaa      2400
     tgccaatctc atccattata aaaaaatgaa cgcacaattc agaagggaat taaaatcgag      2460
     taaagccaac agcctattta aattgacttc gacaatctcc cctcagtcca aaccggaagc      2520
     aatttggagc aacctaaaaa aactctgtgg ccttcacaaa gccacacaaa tacacgccat      2580
     caaggacaac agcagtagcg atttgctcac cagcgccgaa gatatttctg aagcctttgc      2640
     aagctattgg tcactccgat cggaagactc tcaattctcc aatactttca ttgaagaaaa      2700
     acgaaaacta aatacgctta actatttaac tcccccacac agaactgcag cgttcatgga      2760
     acaggatata aacttcctag agttctcatc cgcactaaat agcttaaagg gtcacacccc      2820
     aggacaagac aaaataaact acgaaatgat acgacacgtc gctgaatcac tsaaaatgag      2880
     aattatckgt tttttcaaca acatattaag atcttacatt cctcagtcgt acaaaatcag      2940
     cacagttatw ccwatccaca aacaaggtgc agacaaaacc atgacggaat cgtatmggcc      3000
     tatctccctt aacccatgtt tatccaaaac ccttgacaag ataatctcaa aacggctatg      3060
     gtggtttgct acaactaaca agctactgaa tagccgtcaa ctcggattca aaaaagggaa      3120
     atctgcaatg gactgtctgc tttacacaga cgctctaatt agcagagccc tctctggaaa      3180
     aggacacatg tccattatat ctctcgactt cgccaaaaaa taggattgca taccatcaca      3240
     aataaactgt cggaatgggg ctgcggccca ttgattatta aatatgtgat caacttcatg      3300
     tcaaacagga aaatcagagt tcgtgccaac gataacacct caaggattca cccactccac      3360
     aacggcattc cgcagggatc tcccctctcg gtagtacttt ttctcattgc attcaacagt      3420
     ctctcagata taatcgacaa gcacaaggat ctccaacaca cagcttatgc agacgatttt      3480
     aacatcttaa taccattgaa aaaagataaa aacatatcaa tcaacctcga caggctgttt      3540
     acggaaatcg atgaatggtg ccaaaaatct ggagctatgc tttcaatttc aaaatgcaaa      3600
     cacattcaca tttgccggaa aaaacaatgt tcatgccagg tctctacaca atccgcaatt      3660
     ttaaacacag ttaacgaaat aactattcta ggtctgtcct tcaactcaaa atacaaattc      3720
     aatccccact tcaataaatt acacaaatct cttcagaaat catcaaatat aataaaatgc      3780
     ctttccagcg gaaaatacaa cagccacccc aacacccttg ttcaaatcgt caaaagtcta      3840
     tgtatctcca aaattgatta tgctttaccg atatacggca actcttctaa atcactcata      3900
     aaaccaatta aaacgctaat caattcaatc ttgcgaacgt ctctgggagc cttctgctca      3960
     acacccactt tcaatctata cctggaatcc aacatcgaac cactagawat cagaatcgaa      4020
     cacttacaaa caaaaacaat caacactatc atgcacgcaa acgacacccc tctaagaaaa      4080
     attattcacc ggataaccaa aaataacaca aaaaaatacc aatcctcaac cgtcaaccgc      4140
     tgcatttccc tagtctaaag ctcgaatttc caacctctct tcctcataag ccaaaccaac      4200
     attaccgccc tggtttctgg atatcaatct gatagatacc cgactaagcc gactacaaaa      4260
     atccgacacm aacaaggacg tatttgtcca acaatttcgg gaaatgaaac accaactcat      4320
     gagcaacaat tacacacttc tgtttacaga tggatccctg agcaaggaaa taattggctt      4380
     tgcggtaacg acagaggatg ataaacttaa acaagctgtc cttccaagct actcatcggt      4440
     wtttacagca gaggcgattg ctattcttga agccatcaaa atagcaatca agtctagagg      4500
     gaaattctgc atctgctcag attccctatc cacattggaa gcgataacaa acataaataa      4560
     cttcaacttt tatgtaacat ccatccgcga ccttttatta aaatataaaa acaaaatcaa      4620
     gctcctatgg gtccccagtc acgtcggcat aaaaggcaac gaaaatgccg atacagcagc      4680
     gaaagaagcg accaacgctc cattacttac tacaccaaat gtaaaccgtg gagacattaa      4740
     caaacaaata aaaactgaca cccttaaata taaaccaatc acgttgcaaa aatcatcgca      4800
     gtggtatcaa caaataaacc cagaagccat aagcatagct gactacataa aaacttcaca      4860
     agccttcaac ctaccaagaa gggaaatcac aaaaataata cgccttcgac ttggccacac      4920
     cagactcacc cacgaacatc gcttttcaca g                                     4951
//
ID   I-6_DSuz    repbase;    DNA;    INV; 5079 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5079
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 594-594 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 5079 BP; 1859 A; 1450 C; 600 G; 1116 T; 54 other;
     atcagtcaca aactcactct catagagaac ggtcktgcct ttctatcatc gttacaaatc        60
     caaagcttat ctwacaaacc acatacaaaa ataaaaaaca acaataaaaa tccaaacggt       120
     aactgcaagt ccaagaagtg caagtgccaa gcataaccta cgatccataa acgtagcaac       180
     ggaaagatgg gggacccacc cgaccggggc ccaccaacta cccatagcaa taacatggag       240
     ctcctagaaa cacctggccc taaatacatc accatatcta gatcagatcc aaatctcgat       300
     ctaaacaata tatcaccctt cttgatcaag aagmaaattg actttgcctg cagcggtgaa       360
     gtagaggaat gtaaaaaact ccgaaacgga actctwctag ttaaaacaaa aaccaacctc       420
     caagcaaagg gattattcca actgaaagcc ttcgccgaga tagccgtcaa cgtccaacta       480
     cacaactctc ttaattttac caagggagtc atatactcta acgacatcag aggaatcgac       540
     gaaagcataa taaaaagaga actagctagc cagctagtct gcgacgtgaa gaaaatactg       600
     aagagacaaa acggtactct tacagagacc ggccttgtaa ttctcacctt caacactctc       660
     aatctcccgg aatatattat gatcggttac caaaaaacta atgttaggga atacattccc       720
     ttgcccctta gatgcaataa atgctttatg tttaaccaca tcagtaatgc atgcagaaac       780
     aacaaactgt gctacaactg cggacaagag taccacttgg acccaaacac caacgacaaa       840
     tgcacaagac ccgcacattg cgtagactgc aaggaaaacc aaaccgccga ccstcacaac       900
     tctgtaaaca gaagttttac aaccacaaaa aaatgcgaca acaaaactgc tctctcmatc       960
     ttacgatctc gttacwcagt caccacccca cactcatacg catcamtaac taaaactwmc      1020
     cascacacac atccaaaccc tacaccacaa caaaacacag gacctcaaca tctcaaagga      1080
     cccaaccatg cccaacaagg accaactacc tcmaggwcta ccccaacatc atacgcaggc      1140
     cccacgaaca cagataataa cttagataaa ctaaccmaac ccmccaaacc aagcaccaac      1200
     actgtccaaa tcctaccgct taccacgtmc aaacgcatga tcgcagacct caaggccgca      1260
     gccaaaacca ccacaaaaaa accaaaaaaa actcaactac gcctgagaat gcttctagcg      1320
     actcacgcga tatggaaatt aactgawata ccaatcaccc ttactaacct agattaatgc      1380
     ttaaaataat tcamtggaac ataaaagkct acaagaataa ttaccaagaa ctccaaatac      1440
     tcctcaaaca atataaccac atataattgc cctacaagaa acccatatat ctcacactga      1500
     atctctaccw gcccctgtaa actttacact tttctgcagc cacaatacta atgcattcgg      1560
     aggcacagcg ctactggcgc ataattctat ctcccacacg caacaccaac tgatcccaga      1620
     gtttgaakct attgccattc tgattaattc caaaacaaaa tktacactaa twtccacata      1680
     catctctccc aacaawcaat tccacacaaa caacctccaa aaagcctttt ccccaamaaa      1740
     cctacccast atagtcctag gtgatttcaa cagctggcac ccatattggg gttcccccag      1800
     agccaactct aggggcaaca ttgttgccag actacatact ccttaacgac aagtccccaa      1860
     cacactattc cactcgcaac acatttacac acatagacct ctctcttgcc actgcagaca      1920
     tagcacccga aatawmgtgg agagtgatcg atgaccttcc ggmagcgatc atttccctat      1980
     ccttatttct atgttccaaa cacttcctct matccctttc tcsccaaacc atcctttaat      2040
     ctgaacaaag cagactggaa actattttcm aacaccatca cacaactcag ctgcacaaat      2100
     taaaaaaaca ctwatacaat ctgctcgtac agcattccac aaaacacaac cttttccctt      2160
     aaacacgctg tcccctggtg gaatcaagaa cttacattgc taaaaaacac gaaaaacmat      2220
     aaatttaaac tcctaaaacg aaacataaac acagtaaaca ttttggaatt taaaaaagca      2280
     aacgctaaat ktagaagagc tattaaagaa gcawcattat acaattttac ttctgacatc      2340
     aaccctaact ccgacccatc gagaatgtgg gccaacataa aasggttatg cggccttcac      2400
     ccwacaaaac atacacatgc tatatacaac ccccttacac aagacactta cacttgcccc      2460
     tcacaaatag ccawcwcctt cggsgacctc tggacacaaa cttctctgat tcctttakaa      2520
     ctaacaaact cctcaataag tcacattccg tgtcaagcwg ccaaccaaat cgaaaacgac      2580
     atatcctata tagaaatgtt atctgccctt aactccctca aaggctccac ccctggtwtg      2640
     gaccgcatct cctattccat gatcaaaaac tctcctccct ccttcaaaat cagaatcctc      2700
     aatcattata ataacattct aaacacacac ataccgcaag cmtacgaagt tagtmtcgtc      2760
     cttcctatcc ttaagcccca aaaaccgcaa attgaaccta aatcctacag acctatatcc      2820
     ttaaacccat gcatagccaa aatattggac aaaattatcg cgaaaaggtt gtggtggttt      2880
     gtwctaacga acaaactcat tcacaacaam cagttcggat ttaaaagagg taaatcagtt      2940
     ctagacagtc tactatatgt agaccaccta gcaactagat ccctatcctt aaagcgccac      3000
     ctctctatca tctcgttgga tttttccaag gctttcgaca aaataggtgt ccactcaata      3060
     attcaacaac tccaagaatg gcagctagga ccccgaatca taaactacgt ctcgaacttc      3120
     atgaaaaata ggaaaattat tatcaaaaac ggcagaaatc tatctaacag ttttcctctc      3180
     gacaatggca tcccacaagg ttcacccatt tcagtcatcc tattcctaat ttcctacaat      3240
     tccctaacaa aaataatagc cttaccaaga caaatcaaat tcactgctta cgccgacgac      3300
     ttccacctaa ttattgaaca caacagaaga aaaaacccca ttgtcgacct atcttccctc      3360
     ttccaggaaa taggacattg gtgttccgac tcgggagcct ccctatcaat cgaaaaatgc      3420
     caaagcctac acatatgccg taaacataat tgtaaatctg aaatccgtac cggcactgtw      3480
     aatatcccag aaaccaacaa cacaacaatc ctaggtctca cgctaaacaa tagatacaac      3540
     tggtccaccc acataaacaa attaaaaacc aaactatgca agcccctgaa catcattaaa      3600
     cacctttcct ctctaaaata caataccaac acttcctcgc taatccatat tgtaaaatcc      3660
     atcctcatat caaaaataga ttactgtctg cccatttacg gaaacgctcc caaacaccta      3720
     atwaaccgta ttaaaacttc cctaaactca gcmatcagat cagcgctagg tgcatttagg      3780
     acaacaccaa cwaacaactt acttatagaa gccaatataa gcacaataga acacagaaca      3840
     aaacttttaa caggcaaact ttcaaaaaaa cttatacact cttttgacac cccmcttaaa      3900
     aaacttacta aaacctccaa aaagaaattc aaatatccca gtacaataga cagaataatt      3960
     aacatttgta agcaacttca ccttcccttt gcaccaatca aaaacaacta caataaaaaa      4020
     tacgacatgg aaattattaa caaagctact aacacaacac tatccaacta caacaaaacc      4080
     agcacatctc ccataatata taaacaactc tttcaaactc taaagaacac tctgcccaac      4140
     caccaattcc tttacaccga cggctcaatg gccaacggta taatcagcta tagtgtaacc      4200
     agcgaaacca atacaatcaa aacaggactc cttccccact actcatctgt tctctctagc      4260
     gagcttatag ccatacacga agccgtcaaa atcgcgctaa aaataccagg gaaacatgct      4320
     atctgctcag actctctctc tgcgctaaag tccctcacca accccaataa ccattcctac      4380
     tatccctcaa ccatcaaaaa cctggtttct aaccacttcc ctaaaattat actaatttgg      4440
     atccccagcc acatcggcat aacagggaac gaaaacgccg ataaagcagc caaagaggcc      4500
     cacaaatacc cccttaccta ctccacaaac aacaactcta acgacatttc acacttcttg      4560
     aaaaagcaca tacaatcaaa acaagctgac atctacaaca atgtatcgcc ttggtacaaa      4620
     caaatgctac agacctcacc gcaatccatc tgtcagatac ccccaaacac caataggaaa      4680
     acacaaatac tcatacaccg gatacgacta ggacatacca aactgactaa tgcccattac      4740
     atggatagaa cacttcccaa cacatgccca ttctgccacc actccccaat agacatccaa      4800
     catatcatta tacactgccc ttccttatcc caacccagat cagaatcctt ccaatcactt      4860
     aaccccatca acaccatctc aaacccaacc cccgacaaca tcataaaaat catcacattt      4920
     cttgaaaawg cccaaattaa gcttaaaatt taaatgtata taaaaatgct gttaatccca      4980
     cacctcagat gagctgaagg ccttagctgc tagagctctt aaatttagtt agcctatagt      5040
     tttaactcta agctagcttt atataaataa ataaataaa                             5079
//
ID   I-6_DTa     repbase;    DNA;    INV; 4885 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4885
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5911-5911 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 4885 BP; 2037 A; 1247 C; 578 G; 1002 T; 21 other;
     cagtttcact ccagasctca ttgwgtaaag acgtgcagct acggcgatct awatcaccaa        60
     cmaccagtgc ttatcagcaa aattckcaaa aacaaamaag aaaacaaaag agaccccmaa       120
     aaaagatwam aaaaaataca acaacaaaca gtcacgtgat cacagcaacc acaagcaagg       180
     gttcgcccca caaaaccaaa atgttaccac cagataaaaa cagacttttt tctaaaaact       240
     taataactga acataaattc atcgttataa aaagtaaaga caatacatcc ctggaaaaca       300
     caaacccatt cattctaaaa aaatcaatcg actacatctg cggaggtgaa gtggaaaaat       360
     gtaaaattac aagagcaggt acaattctaa ttcaaacaaa aaacatwcaa caagccgaaa       420
     aactactaaa aattaaaaaa cttggtgtag tagacgtaga agcatacgaa cacaagaacc       480
     ttaaccagac caaaggagtt atttattgta atttgcttag gaatatcaca gaagaagaaa       540
     ttctaaacga actgaagtcc caaaaagttt ctgaagtgta caaatggacc aaactagtcg       600
     atcaaaatcg agttccaaca ggacttataa cgcttacatt tgactctacc aatctccctg       660
     aaaaagtgtt tatcggatac gaaatagtat tcacacgccc atacatacct cttcctatgc       720
     aatgcaagaa atgccttcgc ttcaaccacc cccaagttgg ctgcaagcaa gacaacccta       780
     catgcaaaaa ctgctctgag accacccaca acaacgacaa caacgactgt aggcaacaac       840
     ctaaatgcat caattgcaaa ggaaaccact catccaggga cagaaaatgc ccaatctttc       900
     tcaaagaaca ggaacttata gccatcagaa tcaccgaaaa agttgaccac aaaactgccc       960
     gttccatata cwtcacccgt catagctcta tccaagaaac ttcatattct caaacccttc      1020
     aaaatccatc accaacagta aaccccaccc cagcaattga aacacaaata cataacacaa      1080
     atgaaatcca taagaaaacc accaacatac acgasttcat gaaagaggtg aacaaggcac      1140
     atgcaggact gaagaggata gcacgaaccc ccgccgccta cgaaatgacg actctgaaag      1200
     accctcgaca wcaacaaacg accgcgttct cagaagccaa gctamagaaa aatccaccct      1260
     atctaaaaac ctcaaagcaa aagaccaaag aacaatcctt tccagtacga acgttataaa      1320
     acaaacacaa aaactgccct aaactatgtc cttaaaaata ttacaatgga atattaaagg      1380
     atattcgaac awctacaacc aactactaat actcatcaag acacactctc cacatattat      1440
     ttcactccaa gagacacaca tacaacaatt tcagagmcta ccaacaccag taaactacaa      1500
     tatactaaca aacattgcwt ctaacagatt tggaggagta gccctgctaa tccacaaatc      1560
     aatccaacac actcaaagta atatcaatga agatgtagaa gcaatagcag cagagataaa      1620
     atcaaaagaa aactttaaag tttactccat ttacatttca cctaacaaat ctttttcacg      1680
     caacaaccta aacaacgtaa ttaactttaa caacgaaact gttatgatta caggagattt      1740
     taacagctgg caccaaaact gggccttcgc acacattgac ctcagctttt gttctccatc      1800
     actcacacca ctcacaacct ggaatctgat agatgacctt tgcggaagcg accacttccc      1860
     aatcatcatc accctctttc cgacacaatc atcaacaaaa agacaccaat ttttaagtta      1920
     aacgaagcaa actggtataa ctttacaacc cacacacata acaacaataa cctataccct      1980
     ccttcaacca acataaacaa agaaacagca ttaattaaca aaataatcat taaaagcgca      2040
     caccatacga taccacaaac actaccacac cgacactcac gcacagttcc ttggtggaac      2100
     aaaaacttag cagacttaca cattgagaaa aaacaaacat ggaaagcact gaaaagaaac      2160
     acaacgatca agaaacgatc attgcttaca gaaaagaaaa cgcgcttctg aaaagggaaa      2220
     ttcaattagg aaaagggtat ccacaaccac tttcacatca gccattcaag caagcacacc      2280
     aacagcaaaa atatggaaca acattcgccg atttttcggt cttaacccag caaaacaaat      2340
     acactgcata acaaacaaca acaatgtaac caccgacgac aaaaaccaaa tggccaacct      2400
     tcttgcacat cattggtccc atccttcaaa mgacgaaaac ttcagccaag aaccctcaat      2460
     cacattccat ccacatctgc tatagagatc gacaaaccca taaccaaaat cgaattaacc      2520
     attgctctac aatcacttaa aggctcaaca ccaggaatca atagaatctc ataccccatg      2580
     ataaataaca gttcaccatc aataaaaaat agaatacttt ctcacttcaa tcacatcttc      2640
     aatcactata tacctcaatc atacaaaacc agcctgatca taccaattca aaaacctsaa      2700
     aaggataaaa ctgacatctc atcataccga cccatctcac ttaactgctg cctgagtaaa      2760
     actatggaca aaataatagc gaacagacta tggtggtttc tcaacaacga taaacttcta      2820
     cacccacatc aattcggttt caaaaaaggt aaatcgactt tggataatct gctctatgca      2880
     gatcacatca ttacgaagtc acttaatacc aggaaacata cctcactcat ctctcttgac      2940
     tttgcaagag ctttcgatca ccaagaacaa aaagaaaaca gtcagaatag ggacacacaa      3000
     ctcaaacata caccctccag aaaacggaat cccacaagga tcccccatat cagttgtact      3060
     cttcctaata gccttcaata aactagccaa catcctgaca agatataaac agataaaatt      3120
     ttgcgcatat gaagacgact tccttttgct ggtaaatcta aaaaacaaga aaaacattac      3180
     catcaaccta aaccacatct ttaggaaaat agaagactgg ggaagctact caggcgcatc      3240
     actatcacaa acaaaatgcg agcacttaca catatgtaga aaacacagat gcaactgcat      3300
     aatcacaaca cagaattcaa acataaaaaa cgtagaatca cttaaaatac tcggactaac      3360
     cataaacaag aaatacaact ggaactcaca tattgacact ctcataccat cactctccaa      3420
     caaacttaac atcataaaat gcttggccag ccccaagttt aactgcaaca caaacactct      3480
     attaaacatc acaaaagcca tacttatatc taaaattgac tatgcacttc acacatatgg      3540
     atacgcccca aaaaatacac taaacaaatt aaaaaccaca ctaaacgcag ctcttagagc      3600
     agtcctaggt gcgtttcgca caacaccaac atacaattta ctctacgaat ctagcatccc      3660
     aaccatcgaa caacggcgag atcatctcac aactaaactc ttcaaaaacc ttatgcgctc      3720
     caaagacaca ccaatacaca aacttatcaa accaacaacc agaagaaaaa aatggacctc      3780
     aacactagat cgaaccatag aaaactgtcg acaacttaac atacccttta aaccaacaaa      3840
     attatacaaa acaaaaccgc catggcaact acaacaaaat ataataaaca cctcgctgca      3900
     taattacaaa aaaaacaaca cttcaccaga aacataccaa aaactattta atgaaacaaa      3960
     agaaaactac aaaaatcata catttatata cacggacaga tctcaacaaa actcaactac      4020
     agcctttgct attaccaccg aaacagaaat attgcactac ggtaacctgc caccgcactc      4080
     atcaatccta acagcagaga taattggaat actcgctact agcaggagcg gaaaattcgt      4140
     aatctgctct gactccttag gagcgatcga agcaatacga aatccacaaa atctcaacaa      4200
     atacccaaca cacatcagat cacaaataca actaaaacaa cctaaaatta aaatcttatg      4260
     gaccccagga cactccagca tcaaaggaaa cgaactcgca gataaaacgg caaaagaagc      4320
     aacaaaaatg ccacttatat ttacgcaaaa cgaaaacata aaagacataa acaaacttct      4380
     aaaaaataat ctaaatcaag aaaatgaaaa cttaataagt aaatgcaaca catggtacaa      4440
     aaacattaac acaaacaaca tccacatatc aacactttct aacttaattc aagaagaaac      4500
     cagcagaatt gatcaaatta aattcattag actccgcctt ggacattcaa acataacaca      4560
     caaacacctt ctcgatccgc tcacctcacg caactgccct ctttgccaat caaccccagt      4620
     taacatggaa cacatcctag acacatgccc agcaataacc caggacaagc aacttctttt      4680
     taaaaatctc aaagccacag actacctcaa gcacccaaca acagaaaata taaaaacggt      4740
     cataaatttc ctaaaaaata caaacttata taatctaatc taaaatgtat cgaattcaac      4800
     gagctgaagg cctttgcagc tagagctctt aattcatagc tagcttatag ttttaacttt      4860
     aagktcgctc watataaata aataa                                            4885
//
ID   I-6_DY      repbase;    DNA;    INV; 5400 BP.
XX
AC   .
XX
DT   13-JAN-2012 (Rel. 17.09, Created)
DT   13-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5400
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1923-1923 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           191..1471
FT                 /product="I-6_DY_1p"
FT                 /translation="MTDPPDIHXFTSKSYQSQLGNPKFIVIKRKDNNSFER
FT                 ISPFIIKKSVDFACGGEVEGCKRTRDGSLLIKTKNELQARKLLKLTTIADV
FT                 EVTATEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVTEVKKIMKRQNP
FT                 NSNSDSNNTTLIETGLIIITFESHKLPEILRIGYETVRVRDYIPLPLRCKK
FT                 CLRFGHPAPICKSLETCTNCSEIKHTNDGETCTNEKNCLNCRNNPEINHQH
FT                 SPLDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQLRDSYAKTLT
FT                 NGTTQMKTNTQAPNIDANTHTIQSQNSYITPTSTAHTTSSKTTTTGPAKTT
FT                 PLSNQPLQHHHHHCYDKPEDMDTYHPTDHPTSTPYSSQHTEDLKIKIFSKD
FT                 KSNNLSTNLKASKIKAKTLNKKKHTNNSDSESI"
FT   CDS           1905..5258
FT                 /product="I-6_DY_2p"
FT                 /translation="NTFNIQQTPSLITGDFNGWHPSWGSPTTNTRGKITQR
FT                 FIDNTHLILLNDKSPTHFSTHNTYSHIDLTLCSPILAPHANWKILNDLHGS
FT                 DHFPIITTLFPTTNTQKFNRPFFKLKEANWDQYSAHTQQINEKYPTSQNVN
FT                 KEAAQINRIILYSANLSIPQTSPNAHPYRVPWWNKHLDQLRKQKQLAWKKL
FT                 NRTITLENIIDYRRKNAKFRYELKKRKKEASSSFTSTIHPTTPSSKIWTNI
FT                 RRFCGLNPIKQIHAISSPENNETTLASNEIANIFAQHFSELSGDWNFSEEF
FT                 RNNKYRNNLHNYTPSPIAQTIEKNITYLELISALQTLKGSAPGLNRISYQM
FT                 IKNSSPTTKHRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTTSYRP
FT                 ISLNCCIAKTLDKIIAKRLWWLVTHSNLLNENQFGFKKGKSTSDCLLYVDY
FT                 LITKSKMHTSLVTLDFSRAFDRVGVHSIIHQLQEWKTGPKIINYIKNFMIN
FT                 RKIIVRVGPHTSSPLPLSNGIPQGSPISVILFLIAFNKLSNIISLYKEIKF
FT                 NAYADDFFLIINFKKNTNISLDNLLNDIGNWGSYSGASLSLSKCQHLHICK
FT                 KHHCTCKVSCNNIQIPTVTSLKILGITINNKYKWNTHIYSLLPKLYNKLNI
FT                 IKCLSSLKFNCNTYTLLNVAKATVIAKLEYGLFLYGHAPKSILNKLKTPFN
FT                 SAIRLALGAYRSTPINNLLYESNVPSLEMKRDLQIAKLSQNLIFSKNTPIH
FT                 KFVKHKKSKKKTLSIIDHTIKLSLELNLPYKPIKLHKYKPSWDLPNLIDTS
FT                 LRGHKKQETSPESYRKLFEHTKNKLKPHSFIFTDGSKINCIISFAITTDTN
FT                 ILKQGILPPYSSVLTSETIAILEAIELIKTRRGKFVICSDSLSAIDSIKNP
FT                 NNNSFYPNRIRSLITQHAPKIKIMWIPGHSGIIGNELADQAAKSASNMPLI
FT                 VTPNINNTDIKRHLKAELATKQKENIINCNQWYQSLNINNTHTCDYLKQTR
FT                 QNWTRLDQIKIIRLRLGHTNITHQHYLNPNPITVCPFCQGDLSISHIMNSC
FT                 PSLIQTKQAIFSNANPLDLLSKPNPENIQKIIRFLKKTELYHQIKKKKQMY
FT                 NNKHSNHLTN"
XX
SQ   Sequence 5400 BP; 2188 A; 1435 C; 613 G; 1161 T; 3 other;
     cagtaccact tcaacctccg aagagataag tcgtgccact atagtttaaa gcctcgcttc        60
     gcgcaagccc taaaactctt atcagaaaaa ctttgcacaa acaaatatca accacaaaga       120
     taaaacaaaa aaacacaaca acaaaaacac caagacctat agctcgggct gaagccctta       180
     actaacaatc atgacagacc caccagacat tcataanttc acctcaaaat cttaccaatc       240
     ccaattaggc aacccaaaat ttattgtcat taaaaggaaa gataacaact cgtttgaaag       300
     aatatcacca ttcatcatta aaaaatctgt ggactttgcc tgtggaggag aagttgaggg       360
     atgcaaacga acaagagacg gcagcctatt aataaaaact aaaaatgaac tacaagccag       420
     aaaactcctt aaactaacaa caatcgcaga tgtggaagta acagcaactg aacataaaac       480
     attaaacttc tctaagggag ttatttactg caacgacctt agatatatcg acgaagacac       540
     aattctacaa gagttaaaac cacaaaaagt aactgaagta aaaaaaataa tgaaacgaca       600
     aaaccccaac tctaactctg atagcaacaa caccacctta attgaaaccg gcttgatcat       660
     cataacattt gaatcacaca aactccccga aatattacga atcggctacg aaacagtccg       720
     agtacgagac tatattccac ttccacttcg atgcaaaaaa tgccttcgct tcggccaccc       780
     agcnccaata tgcaaaagcc tagaaacctg caccaattgc tcagaaataa aacacacaaa       840
     cgacggagaa acatgcacaa acgaaaaaaa ctgcttaaac tgcagaaaca acccagaaat       900
     caatcatcag cacagcccac ttgaccgcaa atgccccact tttataaaaa accaggaatt       960
     aacagccatt aaaaccacac aaaaagtaga ccataaaact gctcaacgta tttattttga      1020
     acgacacggg ttccaattgc gagactccta tgccaaaaca ctcacaaacg gcacaacaca      1080
     gatgaaaaca aacactcaag cacctaatat cgacgcaaat acacacacaa tccaatcgca      1140
     aaattcgtac atcacaccca catcaacagc gcataccact tcatcgaaga caacaacaac      1200
     tggaccagcc aaaacaactc ctctgtcaaa ccaaccgctt caacaccacc accatcactg      1260
     ctacgacaaa ccagaagaca tggatactta ccaccccact gaccacccca catctacgcc      1320
     atactcatca caacacacag aggacctaaa aataaaaatt ttctcaaaag ataagtctaa      1380
     taacctatct actaacctca aagcatccaa aataaaggcc aaaactctaa acaaaaagaa      1440
     acacactaac aacagcgata gcgaatccat atagaatctt aagccctaca cagagcttaa      1500
     actaaaccgt caacaccacc cttaaactaa gttataagct tttatctcct cccaaatgtc      1560
     ccttactgta atccaatgga acttaaaagg atatgtaaac aactacagcc aactccttat      1620
     tctcattaag aaatactccc cacacataat ttccctccaa gaaacccaca tacaacacat      1680
     taatatcatt ccaactccaa taaactataa gctattaacc aatatagcca ccaatagatt      1740
     tgggggcgta gcactactag ttcataagtc aatccaatac actatcctca atatcacaag      1800
     cgatccagaa gcaatagcca taaacataca atctaaaata aaactaaaca tattttccac      1860
     atacatctcc cctaccaaaa acatttctga ccagacactc ctaaaacaca tttaacattc      1920
     agcaaacacc atctctaatt acgggagatt tcaatggatg gcacccgtct tggggctccc      1980
     caacaacaaa tacacgaggg aaaataactc aaagattcat cgacaataca caccttattc      2040
     tactaaacga caaatctccc acacactttt caacacacaa tacttactca catatcgacc      2100
     tcacactctg ctctccaatc ctagcccctc acgcaaactg gaaaattcta aacgatcttc      2160
     atggcagcga ccattttcct atcatcacga ccctattccc aacgactaat acacaaaaat      2220
     tcaacagacc cttttttaaa ctgaaagaag ccaactggga ccagtacagc gcacatacac      2280
     aacaaataaa cgagaaatac cctacctccc aaaacgtaaa caaagaagcc gcccaaatca      2340
     atagaattat tttatatagc gcaaacctct caatcccaca aacctcacca aacgcacatc      2400
     cctacagggt tccatggtgg aacaagcacc tcgaccaact gcgaaagcaa aaacaacttg      2460
     cttggaaaaa attaaaccgt acaatcaccc tagaaaacat tattgactat agacgtaaaa      2520
     acgcaaaatt taggtacgaa ttaaaaaaaa gaaaaaaaga agcttccagc tctttcacct      2580
     caaccatcca tcccactacc ccctcatcca aaatatggac caatataaga cgtttctgcg      2640
     gacttaaccc aataaaacaa attcatgcca tatccagccc agaaaacaac gaaacgacac      2700
     tagctagcaa cgaaattgct aacatattcg cacaacactt ttctgaactc tccggcgact      2760
     ggaacttttc agaggagttc cgaaacaata aatacagaaa caacctacac aactataccc      2820
     cctctccaat agcccaaacc attgaaaaaa acataacata tctcgaactc atctcagcgc      2880
     tacaaacatt aaaaggatca gctccaggac tcaatagaat ttcatatcaa atgataaaaa      2940
     atagctcccc cacaacaaaa cacagaataa caaaactatt taatgaaata tttaatagcc      3000
     acatacctca agcctacaaa acaagcctaa tcatcccaat cctcaagcct aacaccgaca      3060
     aaactaaaac tacgtcttac cgacccattt ctctcaactg ctgtatagca aaaacactag      3120
     ataaaattat agctaaaaga ctctggtggt tggtgacaca tagcaaccta cttaacgaaa      3180
     accaatttgg atttaaaaaa ggcaaatcga cttcggactg tctactctat gtagactatc      3240
     tcataacgaa gtcaaaaatg cacacctccc tcgtcactct tgacttttca agagccttcg      3300
     atcgagtagg tgtgcactcc ataatccacc agctgcagga atggaaaaca ggcccaaaaa      3360
     ttataaacta cataaaaaac tttatgatta acagaaaaat aattgtccgt gtcggtccgc      3420
     atacatcaag cccactaccc ctatccaatg gaatccccca aggttcaccc atatccgtaa      3480
     tactctttct catagctttt aataaattat ctaatatcat atccctatac aaagaaataa      3540
     aatttaacgc atacgccgac gacttcttcc ttataataaa tttcaaaaaa aacacaaaca      3600
     tcagcctaga caacctntta aatgatatag ggaattgggg ctcctactca ggggcatcgc      3660
     tatccctatc aaaatgccaa cacctccaca tatgtaaaaa acatcactgt acttgcaagg      3720
     taagctgcaa caacatccaa attcctaccg ttacttccct aaaaattcta ggtataacta      3780
     taaacaacaa atataaatgg aacacacaca tatattcact cttacccaaa ctctacaata      3840
     agctaaacat aataaaatgt ctatccagtc tcaaattcaa ttgcaacacg tatacactac      3900
     ttaatgtagc aaaagcaacg gtcatcgcca aattagaata tggcctgttt ctatacggcc      3960
     acgctcccaa aagcattcta aacaaattaa aaacaccatt taactccgca atccgcctag      4020
     ccctcggagc ctatcgctct accccaataa ataatttact ctacgagtca aatgttccct      4080
     ctttagaaat gaaacgagac cttcaaatag ccaagctatc ccaaaaccta atcttttcga      4140
     aaaacacgcc aattcacaaa tttgttaagc acaaaaaatc taaaaagaaa acactatcaa      4200
     taatagacca cacaatcaaa ctcagcctag aacttaacct accctacaaa ccaataaaac      4260
     tccataaata caagccatca tgggacctcc ccaacctaat agacacatca ctcagaggcc      4320
     acaagaaaca agaaacatcc ccagaatcat acagaaaatt attcgaacac acaaaaaata      4380
     aactaaagcc acatagtttc atattcaccg acggttcaaa aattaactgc attatatcat      4440
     tcgccataac aactgacaca aacatcttga aacagggcat actgcctcca tactcatccg      4500
     tcctcacctc cgaaacaatt gccatactag aagcaataga actaattaaa acccgaagag      4560
     gtaaatttgt tatctgttcc gactccctat cagcaataga ctcaatcaaa aacccgaata      4620
     acaacagctt ttacccaaac cgaatcagat ccctaataac acaacatgcc cctaaaatta      4680
     aaataatgtg gattcctggc cattcaggaa taataggaaa tgaacttgcc gatcaagctg      4740
     caaaatcagc aagcaatatg ccactaattg tcaccccaaa cataaacaac acagatataa      4800
     aaagacatct taaagctgaa cttgcgacaa aacaaaaaga aaacattata aactgcaatc      4860
     aatggtacca atcacttaac ataaataaca cacacacctg cgattacctt aaacaaactc      4920
     gccaaaattg gaccagactc gaccaaataa aaataatacg acttcgacta ggacacacaa      4980
     acataaccca ccaacactac ctaaatccaa atcctataac agtttgccct ttttgccaag      5040
     gagatctttc aataagccac ataatgaact catgtccatc ccttatacaa accaagcaag      5100
     ccatatttag caacgctaac cccctagacc ttcttagcaa gcccaaccca gaaaacatac      5160
     aaaaaatcat acgcttccta aaaaaaacag aattatacca ccaaattaaa aaaaaaaaac      5220
     aaatgtacaa caacaaacac agtaatcatt taaccaacta gccattaatt agatttaaaa      5280
     aataaataaa taaataaaaa ttgtaaacca acatagccat aggccctgca gccagtgcta      5340
     tattacttaa gttagtttag ttttgtaaac tgctctatcc attataataa taataaataa      5400
//
ID   I-6_LMi     repbase;    DNA;    INV; 5710 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5710
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3139-3139 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..1353
FT                 /product="I-6_LMi_1p"
FT                 /translation="MSGGEYGEGGGLDPDRNLQTLADAVHLLTGTHGEFVV
FT                 QDCRQDCSWSEEMVPSLDASQEDTSRSEVSVSNLPMDIVDVPMANSAESRI
FT                 TNKRRSEEPAPSRSCKILSPDKIDVTGPTKDQILSSPVQSVSEQSLPCTRG
FT                 QTTNTQKNPIQNRYKNTDNGPYIVYVESSTHNVGRLHPMAVGKWLHMGLPE
FT                 VKDFIKDIQATGINRIRIELSNGNAANRLVSEQSLANKNCEMFIPTHLINK
FT                 QGVIRNVDFELDEQEILEVAESRYKILSVRRFITRTLQGEYKKQSTVLLTF
FT                 DSQVLPSYVSIHGMRCEVRPYVPPVRQCYNCLRFGHIGRQCRSQTRCARCG
FT                 GPHNTRICQVQCPKCVLCQGQHLATERSCPEHIKRRQVQEIATFHNIPTKE
FT                 AWAVFNRQSYATVTAECQDTK"
FT   CDS           join(1689..2342,2300..3247,3229..5484)
FT                 /product="I-6_LMi_2p"
FT                 /translation="MQIILAILQQVQTLAPETINTEMIHTWWQLHFQRKMD
FT                 FSILQWNARSAIANKDMLLRELWVRKIAVAVISETWFSPGREVSFRGYQTY
FT                 RNDREDGKGGSAIIVSNVIQHMPLYINYTDIKSFQAVAVRILVPGREFTLV
FT                 SIYCPPRTAIQLQEWYTLVEQLDTPYMICGDFNAHNRMWGCAFDDYLGECI
FT                 QDIMDEFQLISLNDGSPQRQTLDLQQLIRIASTPNARPSAVDLTLCSANIA
FT                 MDFEWKVLPYTMGSNHYPILITWTKRWPVINIQPARKWNIKRADWVKYTKI
FT                 LDSKLNLLPMDQPAKVKYNMFVKYINEAASCSIPKRTTTYHVRRQPVPWWT
FT                 QECSRLVAKRRQACRMLRRHTTLENLIAYKKADATAKQFLKRQKKEYWKAF
FT                 CGKLTKNTPGTQIWSMVNALRRRVVTFRMPQECVEDFADIIAAPTVPQAFT
FT                 IGGIGNDIEDNNDICNPFTVVELERVLKIHTDSAPGYDNIHYAMLYNMSKQ
FT                 AQSTLVDLFNDIWREGTIPEDWITQVIVPILKEGKNPSRGEKPKLATSYRP
FT                 IALSSCVAKTFERLLKHRLEWWLEYYKLFPKTQYGFRKSRCTLDNLTLLAT
FT                 DIEGTFLNNGYLMALFLDITGAYDNVNIPILMQKLRNLNVPYLFLQCIYSF
FT                 LRHRSVYIRMDNNELFGPRTVYKGLPQGAILSPLLYTLYVADLESRFCHKI
FT                 KMLQYADDICLYTQSTSYWVAHLWLNEAAKELATWEMENGLSLSEEKSEVV
FT                 IFTRRRKCYDQLQLELGPYVFPIRSSAKFLGVYFDCKLSWKRHIDYIIGKV
FT                 GKNLNVLRAVTRVWWGADPSVLLTLYRAIIRSVLDYASVIFGNAPVTTLRK
FT                 LDIVQFRVMRIILGAMNSTPTNALLVEAGEMPLNLRRQLLSDIFYLRRSTV
FT                 TDNAIVERVTKLATSRHPIFWSSYNRVPLLVRSYMKCHLITPLILQDKTLA
FT                 VFRYPYETTLHKVSISYMPRELMDMGLAKQELWQLIESKWHQYVCIYTDGS
FT                 KTDNSVSYAFYIPAHGIGKMYKLPYEASVYTAELMAVRQAVYFGIQYYNKI
FT                 LILTDSRSVLQKLENPGWDPRTNQYVLEVIDLLRNAAEKGIHIQFLWIKGH
FT                 AGIVGNEMADLLARRGAKEGSFQPVRLPYTDFIIKFRVQAYQEWDSEWKQS
FT                 QRLRGKHLALIQPNVTTKPWFTKCRIGKRHLTTIIRMRLGHGCYPTHLHRI
FT                 KVCSSKRCEQNDSEEADLNHIILSCTKFEQERVDFYKRLTALGVPLPASVT
FT                 SILFQYQEGKYRIVAKFLKDADIKI"
XX
SQ   Sequence 5710 BP; 1903 A; 1046 C; 1256 G; 1505 T; 0 other;
     atctttggat agcaacagct aaacattatc gaagtattgt gagttcaaat ttaaattaaa        60
     ttaaaaaaaa taaataaaaa agtggtcagt gaaagtaatt gatccgttat gagcggcggt       120
     gagtacggag aagggggagg cttggaccca gacagaaacc tgcaaacttt ggccgatgcg       180
     gtgcacttac taacaggaac acatggtgag tttgttgttc aagactgtag gcaagattgc       240
     agttggtcag aagagatggt tccgagtctc gacgcatcac aggaggatac aagcagatcg       300
     gaagtatcag taagtaatct accaatggat atagtagatg tcccgatggc taacagtgct       360
     gagtcgcgta ttacaaacaa acgtcgtagt gaggaaccag ccccatcaag aagttgtaaa       420
     attctttctc ctgataaaat agacgtcaca ggaccaacaa aagaccaaat tctgtcttcg       480
     ccagtacaaa gtgtttcgga acagtcccta ccttgcacaa gggggcagac aacaaacacc       540
     caaaagaatc ctattcagaa tcgttacaaa aatacagaca atggtcccta tatagtttat       600
     gtggaaagtt ccacgcataa tgttggacga ctgcatccta tggctgtcgg aaaatggtta       660
     catatgggtt tgccagaagt taaggacttc atcaaagaca ttcaggctac agggataaac       720
     cgaatccgaa tagaattatc aaatgggaat gcagctaaca ggttggtttc tgaacaatca       780
     ttagctaata agaactgtga aatgttcatc cccactcatt taataaataa acaaggggtt       840
     atacgtaatg tggattttga gttagatgaa caggagatat tggaagtggc agaatctagg       900
     tacaaaattc taagcgtcag gcggttcatt acgagaacgt tgcagggaga atacaaaaag       960
     cagtcaactg ttttactcac atttgattca caagtactgc caagttatgt gagcatacat      1020
     gggatgcggt gtgaagtaag gccatatgtg cctccagtca ggcagtgtta caattgttta      1080
     cgatttggac atataggcag acaatgcaga agccagacaa ggtgtgcaag atgtggtggc      1140
     cctcataata ccaggatatg tcaggtccag tgcccgaaat gtgttctctg tcaagggcaa      1200
     catctggcga cagaaagatc gtgtccagaa cacattaaac gccgacaggt gcaagaaatt      1260
     gcgacgtttc ataacattcc cactaaggaa gcttgggcag tattcaatag gcagtcatat      1320
     gctacagtaa cagcagaatg ccaagataca aaataacaca attatcgaac aacttccccc      1380
     aaaagtcaat agtgcatctg aatttctaag ctgggaacct ttagtgcaca gcaatgtggt      1440
     atcttgcata aacatctatg gagtttacac aaactaatca tatacctcct attaggagca      1500
     aattaaaatc aataacacca caaaaaagaa ccttctcaaa agcctagtgc atggagggga      1560
     tatgaaaaac tattgatacc agctcagagg ccgatacagt cattgccaac aaatccgtat      1620
     agaccttgtc ctgaaaagca agggaccaca atgcccaagg atataggagg aaatcttgtg      1680
     gacacggtat gcaaataata ttagcaattc tccagcaggt acaaactttg gcaccagaaa      1740
     caattaatac agagatgata catacatggt ggcaactgca ttttcagcgg aaaatggact      1800
     ttagtattct tcagtggaat gcaaggtctg caattgcaaa caaggatatg ttattaagag      1860
     agttgtgggt gcggaaaata gcagtggctg taatatctga aacatggttt agtcctggaa      1920
     gagaagtgtc ttttcgtggt tatcaaacct atcgcaatga tagagaggat ggaaaaggtg      1980
     gatccgctat tatagttagt aatgtgatac aacacatgcc attgtatata aactatacag      2040
     acatcaaaag ttttcaagcc gtagcagtga gaattttggt tccaggacgg gagtttactc      2100
     tcgtttctat ttactgtcct ccaagaaccg ccattcagtt gcaggaatgg tatacactag      2160
     tggaacaact ggacactccc tatatgatct gtggggactt caacgcacat aacagaatgt      2220
     ggggatgtgc tttcgacgat tatttagggg aatgcattca agatattatg gatgagtttc      2280
     aacttatttc tcttaatgac ggatcgcctc aacgccaaac gctagacctt cagcagttga      2340
     tctgacactc tgctcggcaa atatagctat ggattttgag tggaaagttc ttccatatac      2400
     catggggtct aatcattatc ccatacttat cacatggact aagcggtggc cagtaattaa      2460
     tattcagccc gcacgcaaat ggaatattaa aagagctgat tgggtgaagt atactaaaat      2520
     cttagactct aaattaaatc tactacctat ggaccagcct gcaaaagtga agtataatat      2580
     gtttgtcaag tatattaatg aggcagcgtc ttgttctatc ccaaagagga caaccacata      2640
     tcatgtcaga cgccaaccag taccatggtg gactcaggag tgttccaggt tggtagcgaa      2700
     gaggagacag gcatgcagga tgctaagaag gcatactaca ttggaaaatc ttatagctta      2760
     taaaaaggca gatgcgacag ccaaacaatt tcttaaaaga cagaaaaagg aatattggaa      2820
     ggcattttgt ggtaaactga caaaaaatac accaggtact cagatctggt caatggttaa      2880
     tgcattaagg agaagggtag tgacctttag gatgccacaa gaatgtgtag aagattttgc      2940
     tgatataatt gccgcgccaa ctgtaccaca agcatttact atcggtggaa taggaaacga      3000
     cattgaagat aacaatgaca tctgcaaccc gtttacagtt gttgaactag aaagagtact      3060
     gaaaatacat actgattcgg caccaggata tgataacata cattatgcaa tgttatataa      3120
     tatgtcgaaa caagctcaga gcaccttggt cgaccttttc aatgatatat ggagggaagg      3180
     aactattcct gaagactgga ttacacaggt catagtacca atacttaaag aggggaaaaa      3240
     cccaagttag caacatcata caggcctatt gctctttcat cctgtgtagc caaaactttt      3300
     gaacgactcc tgaaacatcg tctagagtgg tggctagaat attataaact gtttccgaaa      3360
     actcaatatg gctttcgaaa atccagatgt acattggata acctcacatt acttgcaaca      3420
     gatatcgaag gaactttttt aaacaatggt tatttgatgg ctcttttctt agatataact      3480
     ggagcttatg acaatgttaa catccctata cttatgcaaa aattgaggaa tttgaatgtc      3540
     ccataccttt tcctacagtg tatatatagt tttttaagac accgatcagt gtacatccgg      3600
     atggataata atgaactttt tggcccacgg acagtctata aaggactacc acaaggagca      3660
     atactcagcc ccttactcta cacactgtat gttgcagatc tggaaagcag attttgccac      3720
     aagatcaaaa tgctgcagta tgctgatgac atatgtcttt atacacaatc aacaagctat      3780
     tgggtagcac acctgtggtt gaatgaggca gcaaaagaat tagcaacgtg ggaaatggag      3840
     aatggcttgt cactatcaga agaaaagtct gaggtagtga tcttcacaag gaggaggaaa      3900
     tgctatgatc agctacaact tgaattaggg ccatatgttt tccccatacg atccagtgca      3960
     aagtttctag gggtttactt tgattgcaaa ttatcttgga agcggcatat tgactacata      4020
     ataggaaagg ttgggaaaaa tttgaatgtg cttcgggcag ttactagagt atggtgggga      4080
     gcagacccgt cggttttact aactttgtat agggcaataa tacggtcagt gttggactat      4140
     gcaagtgtga tttttggaaa cgccccagta acgactttac gcaaactaga tattgtacaa      4200
     tttagggtga tgcgaataat tcttggtgcg atgaattcga cacccactaa tgctctgtta      4260
     gttgaagccg gagaaatgcc actaaacctt agacgacaat tgctttcaga cattttttac      4320
     ttgcgtcgat caacagtaac agacaatgct attgttgaga gagtaaccaa gctggctaca      4380
     tcgcgacatc cgatcttttg gtcatcctac aaccgtgtac cattacttgt acgaagttac      4440
     atgaaatgcc accttataac cccacttata ttgcaggata agacattggc agtgttcaga      4500
     tacccatatg aaacgacatt acataaagta tccatatcct acatgccaag ggaactgatg      4560
     gacatgggct tggcgaagca agaactatgg caacttatcg agagtaaatg gcatcagtat      4620
     gtttgtattt acacggatgg ttccaaaacg gataacagtg ttagctacgc attctatatt      4680
     cctgcacatg gaattggtaa aatgtacaag ttaccatatg aagcgtcagt atatacggcg      4740
     gagttaatgg cagtgaggca ggctgtatat tttggaatcc agtactataa caaaatatta      4800
     attctaacag attctagaag tgtactacaa aagttggaga atcctggttg ggatccaagg      4860
     accaaccaat atgtactgga agtgattgat ctcctcagaa acgcagctga aaaaggtata      4920
     catattcaat ttctatggat aaaaggacat gctggaatag tggggaatga gatggcagat      4980
     ctattagcaa gaagaggagc taaggaaggc agttttcaac cagtacggct gccgtacact      5040
     gattttatca tcaaattcag ggtccaggcg tatcaagagt gggactcgga atggaaacag      5100
     tcacagcgac ttaggggcaa acatctcgct ctcatacaac ctaatgtaac gactaaacca      5160
     tggttcacaa agtgcaggat tggcaagcga catctgacca ctataataag aatgagactg      5220
     ggacatggat gctacccaac acacttgcat aggataaagg tttgcagttc caagagatgt      5280
     gagcagaacg acagtgaaga ggcagattta aatcatataa tattatcgtg cacgaaattt      5340
     gaacaagagc gagtggactt ctataaaaga ctgacggcgc tgggagttcc gctacctgca      5400
     agtgttacat caattctatt tcagtatcaa gagggaaagt atcgcatagt agcgaaattt      5460
     ctgaaagatg cagacattaa aatatgaagt gattgcaaca ttggttaatg gcggtactag      5520
     tggtttgagt cagtactaca taatcgacta ttcacctcgg gtcatgtgat tatcgactat      5580
     ttgaattttt tttgtaaatg tagaagtgtc aatgtgaatt ttattgtaat atgtaatgct      5640
     aaaattttaa tttagagttt ggcaatatag tgcacatggc actaaatgcc acttataata      5700
     aataaataaa                                                             5710
//
ID   I-6_RPr     repbase;    DNA;    INV; 2834 BP.
XX
AC   .
XX
DT   07-MAR-2013 (Rel. 20.10, Created)
DT   07-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2834
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3464-3464 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2739
FT                 /product="I-6_RPr_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="FIKCKQATAQCRRIYKIKKREKWIEYCSSFNRSSPIK
FT                 EIWRKVKALRHGFHRVGPTSGEWIPEFLNALTPEIVPEKIQLPEISDRPHE
FT                 LNKPFSYLELLTALKTNNNTSPGEDRIHYPMLTHLAEPGKTKLLQILNEIW
FT                 MNQIRLEAWSNQVVIPILKPGKDSGNYLSYRPIALSSCVAKTFERLIKTRL
FT                 EWWIESEDKLPAFQNGFRKKRSTLDALANFVMDAYEAFTDGKFKIAANLDL
FT                 VNAYNNVHIPSLIRRMDSIGVPSRIVHHVCNFLASRTIKVRCCGRLFGPRQ
FT                 THMGLPQGAVLSPILFNIFTADVGENLGPEVCISQFADDIILYCSNRILKE
FT                 AINTMDRAMTIFGKWCYNKGLTPSEAKSSITVFTRKRKYTLQSPVKLGALQ
FT                 LRVEPVMKTLGMYLDSKLLWRQHISYIVKKCEQSMNILRYLNHLXYGADVA
FT                 TSLMLYNQLILSRLDYGCFLYGDAASTHLNHVDKLQYKALRASLGALTSTP
FT                 TNALLAEAKQQPLAIRRKLLASRFIIERFCIKRQPSIQRISRISARVFTDK
FT                 FWHKKRSPILVNQFSQLSHFSLEIKRYDLLPVFSFELLVSMENTKNIHTNF
FT                 FQYNENHSNSCNNALLLNKLHRFFPNGYQLFTDGSKNQDGVGCAMTDLSAD
FT                 VSLQFKLNKFASIFTAELFAVYQCLKYVDSIDQSLVLILTDSKSVLQKLQN
FT                 SGNNAPALILETSXLLNSILRKGKSVHLIWIKGHTGLRGNEIVDRKAKEAI
FT                 SLQHTSPYSMLVSDIKNYAKAECYTEWQRIYELSKARKGQFYTAIQSSVPK
FT                 RPWFXRYKNHNRKFVSTVIRMRFNHNYSPHHLARIGVETSHQCSCTSGIIA
FT                 DANHLILECANNTKGRERLWRAVIATGCPLPANLNTILAADDGSIYTELFE
FT                 FITNNRITL"
XX
SQ   Sequence 2834 BP; 955 A; 581 C; 559 G; 733 T; 6 other;
     ttcataaagt gcaaacaggc tacagctcag tgccgcagaa tatataaaat aaaaaagagg        60
     gaaaaatgga ttgaatactg ctcgtcattt aacagatcct ctccaataaa ggagatatgg       120
     aggaaggtaa aggctctcag gcatggcttc cacagggttg gacctacaag tggtgagtgg       180
     atcccagagt tcctcaatgc cttgactccg gaaattgttc ctgagaaaat tcagttaccc       240
     gaaatatctg ataggcctca cgaactaaac aagccgtttt cttacttaga actactgaca       300
     gcgttgaaaa caaataataa cacttctcca ggagaagata ggattcacta ccccatgctt       360
     acacaccttg cagaaccagg caaaactaaa ttacttcaaa ttttgaatga aatttggatg       420
     aatcaaataa gactagaagc atggagcaat caagtagtta tacccatttt aaaaccagga       480
     aaagattcag gaaattatct gtcttacaga ccaatagctc tgtcctcatg cgtagcaaaa       540
     acttttgaaa ggctaattaa aaccaggcta gaatggtgga tagaatcgga ggacaaactt       600
     ccggcattcc aaaacgggtt taggaaaaaa cgcagcactt tggacgcttt ggccaatttt       660
     gtaatggacg catatgaagc ttttacagac ggtaagttca agatcgctgc aaaccttgat       720
     ctagtaaatg cgtacaacaa cgtccatatc cccagtctta ttcgcaggat ggattctata       780
     ggggtcccct caagaattgt acatcatgtc tgtaatttcc ttgcatctcg cactataaaa       840
     gtcagatgtt gtggaaggtt atttggtcca cgacaaactc atatgggctt gccgcaaggg       900
     gcagtactaa gcccgatatt atttaacata ttcacagcag acgtcggtga gaatttgggt       960
     ccggaagtct gtatctctca atttgcggac gacataatat tgtattgcag taacagaata      1020
     ttaaaggaag ctataaacac aatggatcgt gctatgacta tcttcggtaa atggtgctac      1080
     aacaagggac taacaccctc cgaagcgaag agtagtatta cggtgtttac tcgaaaaaga      1140
     aagtatactc tacaatcacc agtaaaactg ggagcactcc aattacgagt agagccggtc      1200
     atgaaaacac tgggaatgta cctcgatagt aaattactct ggagacagca cattagttat      1260
     atagttaaaa agtgcgaaca aagtatgaat attttgagat accttaacca ccttawctat      1320
     ggggcagatg ttgcaacatc gttaatgtta tacaaccaac taattctatc tagattggat      1380
     tatggatgct tcctctatgg agatgcggca tccactcacc ttaaccacgt agacaaactg      1440
     caatacaaag ccttgagagc aagtctgggt gccctgactt ctacgccgac taatgcgctc      1500
     ctagcagagg ccaagcaaca acccttggca atcagaagga agttgttagc ttcacggttt      1560
     atcattgaaa ggttctgtat caaaagacaa cccagcattc aaaggataag cagaatatca      1620
     gcccgagttt ttaccgacaa gttctggcac aagaagagga gcccgatatt agtaaaccag      1680
     ttcagccaac tatctcactt ctccttagaa ataaaacgct atgatttgct ccctgttttc      1740
     agttttgagc tgttggtttc tatggaaaat actaagaaca ttcatacaaa ctttttccaa      1800
     tacaacgaaa accattcaaa ttcttgcaac aacgcactgc ttcttaacaa attacaccgc      1860
     ttttttccca acggatatca gctcttcaca gatggttcta agaatcaaga cggtgtggga      1920
     tgtgcaatga ctgatctttc ggctgacgtc tccttacaat tcaaattaaa taagttcgct      1980
     tccatattca cagccgaatt atttgctgta tatcaatgtt taaagtatgt agattcaata      2040
     gaccaatcgc tggtgttaat tctcacagac agcaaaagtg ttctccaaaa actacaaaat      2100
     tctggaaata atgcwcccgc tttaatctta gaaacttccs aattattaaa tagtattcta      2160
     agaaaaggca aatcggtaca tttaatctgg attaagggcc acacaggtct gagaggaaat      2220
     gaaatcgtgg atcgtaaagc caaggaagcg atctccctac aacatacatc tccatactca      2280
     atgttagtct ccgatattaa aaattatgca aaagcggagt gctatacaga atggcagcgg      2340
     atatacgaat tgtcaaaggc gagaaaaggc caattttaca cagccatcca atctagtgtc      2400
     cccaaaagac catggttttw cagatacaag aaccacaata ggaagtttgt tagcacagtc      2460
     attagaatga ggttcaacca caattattcg ccgcaccatc tagccaggat tggtgtggaa      2520
     acatctcacc agtgttcctg tacttctgga ataatagcag acgccaacca tctaatcctg      2580
     gaatgtgcta acaatactaa aggaagagag cgtttgtgga gggcwgtgat agcgackgga      2640
     tgtccgttac ctgccaattt aaatactatt ctggcagctg atgatggcag catttacaca      2700
     gagctctttg agttcataac aaacaacagg ataactctgt aaatattcaa tatactaaag      2760
     aagcttcgaa agaagaatgt aaatggctga tttgctagct caagaggcca ataacaaagg      2820
     ggaaaaaaaa aaaa                                                        2834
//
ID   I-70_AAe    repbase;    DNA;    INV; 6259 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-70_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6259
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1341-1341 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1671
FT                 /product="I-70_AAe_1p"
FT                 /translation="MDGHSRPPPSDPPDSSRCPGWMIGDDELQHTIALQMR
FT                 VRTSAASTEENEFHLPTDPFVIGNAVMLAVGPANARKVTASKEARGTRYIL
FT                 RTNSKMISEQLQKITELPDKTPVEIVPHPTLNVVQGIVYDLDTINHTEEYM
FT                 LSNLRAQGICSVRRIKKRKGEAYQNTPLSVLSFQGSVLPQHVYFGLLRIPV
FT                 RMYYPSPMLCFRCANYGHTKKKCDSTKFTEVCLNCSTQHDHPVGENCQNTP
FT                 FCKHCQEGHTPISKVCRVYQEEQAIIKTKVDRGLSYGEARANFREANKATT
FT                 YANVLQNRLRNDESEKDKVIKMLQQEVESLRQVILELKQKRANPSISDNNV
FT                 PTQSSAPSTSKLVQPIKSLPGIPGKTPSVALSRLNSIEQCLKTYTENQVRS
FT                 SNSNPNLELEPTDSMDFESNRNNKRKGNKNKTEPESPERKKGIASSSKKK"
FT   CDS           1674..6179
FT                 /product="I-70_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAHETFSEDNDHAIDPDSNFGQLRYIFKQNCTMDNQQ
FT                 NQSSLSKHSATIQPKLFRKYDSVKSYNSDSPSATHPTSALTRDVPAEVDEP
FT                 LAAADVVCLSSQASTVLFSNSDNNFPRVQLLVDHPNNENCAYTPVHSPFSC
FT                 SPISSDSNHHGHSQSSTAAFDSPSARHSTSALTRDVPVITDEPLAAADVAC
FT                 LNPQASKISYRSTDPSLCRPQIFAGPTIERSSIQRPDMAIALPVEALVNSE
FT                 MYDQIHRITAVPSTSYHVRLLLYPAVPNSNDNPAVPNSNPHRQEHNDQSNT
FT                 NTNESLTASPIESTGSRRILMLQWNVRGLWANHSELSHFVSQKKPISINLQ
FT                 EMKTASVERVLRGEYEWKLADHNIRNGKGMAGLGILKEVPHHFYAFNSNIP
FT                 MCAARLHNPYNVTVVAFYFPNNALDKDIIDAMNLLLATTEPPYVIGGDANA
FT                 AHEAWGSSKASQRGRALLSWIVDNDMVVLNNGTPTFLSDVHCTYSAIDITI
FT                 ASKGIASKYNWEVIDDTMGSDHFPIITFSNETISRQGCRKRWLYKDADWRK
FT                 FEQCIDKILPVDIETDIMHFGSTITKAAESSIPKSSGKIGRKSEIWWTEEV
FT                 ANAVKSRRKILRAMKRLNPDDPRKEEMRKSFQTARAEARKVIAEAKKVSWD
FT                 LFCQTFSPTTSSEQIWGNFNRLNGKRKAGVRTMIIDKTHVTNPTQIAEHFA
FT                 ENFESISQTNDKHCSQEYDRTRDDADIEPSVLDANFTLEELLRAIDSAKGY
FT                 SAGIDDVGYPMIKHLPLHAKISMLKAYNKLWNEGIFPEKWKEGIVIPVPKP
FT                 GKSLQHADSYRPITLLSCIGKIYERLINHRLIVHLEAHQLLNQNQHAFRSG
FT                 KGTATYFADLNEILTDALQRNLHCECALLDLKKAYDTTWRPHIVQRIRELD
FT                 LGINMTKSIESFLNNRCFRVSFGGALSSSKIQENGVPQGSVLSVTLFTIVM
FT                 DTVFNVIPPNVTALIYADDILLITVGKKVTSTRKRLDSAVQAVCEWANNIH
FT                 FEISAQKSSLLHVCRAKHRNWKKHRKDIIVNGESIPNVKVARILGIWLDSR
FT                 ATFKKHFKNTINALQNRLNFIRAIAARAHRSVIWRIANATCISKLLYGIEL
FT                 FGLSCIEPYKPVFNRLIRLASGAFRTSPSLSLAIESGLLPFKERVSLAYIR
FT                 SYCKLVEKSPQIRPALEENIEQLSVTLFGESFPAISKLHRFGYRPWYYPRP
FT                 KVDWTVKARFQVGQGAHKAQAIVNELLNSKYMQHTKIYTDGSKDATAVGCG
FT                 IIGPNFKIEGQLPKCCSIFSAEAAALAIAVYHAGNAPTVILTDSASSLSAL
FT                 DKGNIMHPFIQAIETYSDGKQVTFLWIPGHCAISGNVEADHAAKKGRTSLP
FT                 VEYEVPAIDAIRWTKNKINNQLQISWNENTVDNLALVKQNIGKWCDQKKKS
FT                 DQRILTRCRIGHTRLTKCHLFQNKDPEICDSCNTPLDVKHILLECRKFDDI
FT                 RNRIGINSNIAIALGNNKNEEEKMLKYLKDTGLYSLL"
XX
SQ   Sequence 6259 BP; 2038 A; 1336 C; 1296 G; 1588 T; 1 other;
     tcagtaaatt atcacaactt gatcagtacg gtcgcgtgag tttgtttact taaaactcaa        60
     atcgagttat ttctcttgaa aacggtcgaa attaattgtg attttcacat cgtgaaaggt       120
     actagaggtt ttcctaatag tcaatagtgt twtccactaa atcatagacg ctaaagtgaa       180
     gttctgttgc aaattgtgaa cgtgttttgt tgacatagaa gccgcagtac atcactagca       240
     cggaacccgt cgtgtttgtg gtttcctttt cggctgcatc tcgtcgagag cattaaaaac       300
     atccaatagt attggttagt tacaacacgt cctagccgga tggatggtca ttccagacca       360
     ccccctagtg atccaccgga cagcagtcgg tgcccgggat ggatgattgg tgatgacgag       420
     ctacaacaca caatagcact gcaaatgaga gtgagaacaa gtgcagcaag tactgaggaa       480
     aatgaatttc atctccccac ggaccctttc gtgattggaa atgcggtaat gctagctgtt       540
     ggtccagcaa atgctcggaa agtgacggca tcaaaagagg cgcgtggaac tcgttacatt       600
     ttaaggacca actccaaaat gatcagcgaa cagcttcaaa agattactga gctgccagac       660
     aaaactccag ttgaaattgt tccacatcca acgctcaacg tcgttcaagg gatagtttat       720
     gacttggata cgatcaacca caccgaagaa tacatgttga gcaatttgag ggcacagggt       780
     atttgttcag ttcggcgcat caaaaaacgt aagggagaag catatcagaa tacaccgctt       840
     tctgttttgt cgtttcaagg atctgttcta ccacaacatg tgtactttgg acttctgcgc       900
     atcccagtgc gaatgtacta cccctcccca atgctttgct tcagatgtgc caactatgga       960
     cacactaaga aaaaatgtga tagcaccaag ttcactgaag tttgcctcaa ctgctccact      1020
     caacatgatc accctgtcgg agaaaactgc caaaacactc ctttttgcaa acattgtcag      1080
     gaaggtcata ctccgatctc gaaagtctgc cgcgtttatc aagaagagca agctatcatc      1140
     aaaacaaagg tcgaccgtgg gctatcctat ggagaagccc gtgccaattt ccgtgaagct      1200
     aacaaggcaa ccacctatgc caacgtgctt caaaatcgtc tgcgtaatga tgaatctgaa      1260
     aaagacaagg tcatcaaaat gttgcaacaa gaagtggagt cattacggca ggtaattctt      1320
     gaacttaagc aaaaacgagc gaaccctagc atcagcgaca acaatgtacc aactcaatct      1380
     agtgctccct ctactagtaa attagtacaa cccatcaaga gtttacctgg tatccctggt      1440
     aagactcctt cggtggcatt gtcacgcttg aattccattg aacaatgcct taaaacgtac      1500
     accgaaaacc aagtacgaag ttctaattca aacccgaatt tggaattgga gccgacggac      1560
     agtatggact tcgaatcgaa tagaaataac aaacggaaag gtaataaaaa caaaactgaa      1620
     ccggaatctc ctgaaagaaa gaaaggtatc gcttcaagct ctaagaagaa ataatggccc      1680
     acgaaacctt ttctgaagac aacgaccacg ctattgaccc ggactcgaat tttggacaac      1740
     tgagatacat ctttaaacaa aactgcacaa tggacaacca gcaaaatcaa tcaagtctgt      1800
     cgaaacactc tgccacgata caacctaagc tatttcgcaa atacgactct gtaaaaagct      1860
     acaattctga ttcgccaagc gcgacgcatc ccacgtcagc cctgaccaga gatgttccgg      1920
     ccgaggtcga tgagcctctg gcggcagctg acgtggtttg cctatcttca caggcaagta      1980
     cagtattatt ttcaaattcg gacaacaact ttccgcgtgt acaacttctt gtagatcacc      2040
     ctaacaatga gaactgtgca tatacaccag tacatagtcc gttctcctgt tccccaatat      2100
     cttcggactc caaccaccat ggtcattcgc agtcgtcaac tgcggcattc gattcgccaa      2160
     gcgcgaggca ttccacgtcg gccctgacca gggatgtacc ggttattacc gacgagcccc      2220
     tggcggcagc cgacgtggct tgcctaaatc cacaggcaag taaaatatca tatcgctcta      2280
     cagacccaag tttgtgccgc cctcaaatat ttgcaggtcc tacaattgag agatcctcca      2340
     ttcagcgacc agacatggca atcgccttgc ctgtcgaagc gctggtcaat tctgagatgt      2400
     acgatcaaat ccatcgcatc accgctgttc catcaaccag ctaccacgta cgactactgc      2460
     tatatccagc ggttccaaac agcaacgata acccagcggt tccaaatagc aatcctcatc      2520
     gtcaggagca caacgaccag agcaatacca acactaacga atctctgaca gcatcaccga      2580
     tcgaatcgac tggatcgcga agaatactca tgcttcagtg gaatgtcaga ggtctatggg      2640
     ctaatcattc ggagttatcg cacttcgtta gccagaagaa gccaatttct ataaatcttc      2700
     aagaaatgaa aaccgcaagc gtagagcgtg ttttgagagg agaatatgaa tggaaattag      2760
     ctgatcacaa catacgaaat ggcaaaggaa tggctggact ggggattctg aaagaagttc      2820
     cccaccactt ctatgctttc aattccaata ttcccatgtg tgctgctcgg ttgcacaatc      2880
     cgtataacgt tacagtggtt gcgttttatt ttccaaataa cgctcttgac aaggacataa      2940
     ttgacgcaat gaatctttta ctggcgacaa ccgaacctcc atatgttatc ggaggtgatg      3000
     ccaatgctgc tcacgaggct tggggtagct ctaaggcgtc tcagagagga cgggcattac      3060
     tgtcatggat tgtagacaat gatatggttg tgcttaataa cggaactcct acttttctca      3120
     gcgatgtcca ttgtacttat tcagctatcg atataaccat tgcttctaag ggtatagctt      3180
     ctaaatacaa ctgggaagtc atagacgata ctatgggaag tgatcatttt cccattatca      3240
     ctttttcaaa tgaaacaata tcaagacaag gttgccgtaa acggtggctc tataaggatg      3300
     cagactggag gaaatttgaa caatgtatcg acaaaatctt accagttgac atcgaaactg      3360
     acatcatgca ctttggttcc acaataacca aggctgctga aagctcaata cccaaatctt      3420
     ctggtaaaat tggaagaaaa tccgaaatat ggtggactga ggaagtagca aatgcagtaa      3480
     aaagccgacg taaaattctc cgtgcaatga aacgtctaaa tcctgacgac ccccgtaaag      3540
     aagaaatgcg gaaaagtttt caaacagcta gagccgaggc gcggaaagta atcgccgagg      3600
     ctaaaaaagt ttcatgggat ctcttttgtc aaacgttctc gccaacaact agttctgaac      3660
     aaatttgggg taactttaac cggctaaatg gtaaaagaaa agcaggagtt cgaaccatga      3720
     tcatagataa aacccacgta accaacccaa ctcaaattgc agagcatttc gcggagaatt      3780
     tcgagagtat atctcagaca aatgataaac attgcagcca agaatacgat cgaacacggg      3840
     atgatgcgga tatagaaccc tctgtgctag atgcgaattt cacactggaa gaattgttgc      3900
     gagctattga ctctgctaaa ggttattcag cgggaattga tgatgttggc tatccaatga      3960
     ttaagcattt accacttcat gcaaaaatta gtatgttaaa agcatacaat aaactatgga      4020
     atgaaggcat ttttccagaa aaatggaaag aaggaatagt aatccctgtc ccgaaacccg      4080
     gtaaatcact tcaacatgcg gacagttatc gcccaataac tcttttaagt tgtattggga      4140
     agatctacga acgactcatc aatcaccgtc ttatagttca tctggaggct catcagctat      4200
     tgaaccaaaa tcagcatgca tttcgatctg gaaagggaac cgcaacatat tttgcagatt      4260
     taaatgaaat attgactgac gctctccaaa gaaacctaca ctgcgaatgc gctcttctag      4320
     atctgaagaa agcctatgac actacatggc gacctcatat agttcaacga attcgagagt      4380
     tggatcttgg tatcaacatg acaaaaagca ttgagagttt tttgaacaac agatgctttc      4440
     gtgtaagttt cggtggggca ctgtcctcat caaagatcca agaaaatggt gtacctcagg      4500
     ggtcggtatt atcagttacg ttgtttacta ttgtaatgga tactgtgttc aacgtgatcc      4560
     caccaaacgt tacagcgctg atttatgcgg atgacatctt gttaatcact gttgggaaaa      4620
     aagtcaccag caccagaaaa cgtcttgatt cggcagttca agctgtgtgt gaatgggcga      4680
     acaatatcca ctttgaaatt tcagctcaaa aatcttcgct tcttcacgta tgtagagcaa      4740
     agcacaggaa ttggaagaaa catagaaaag acattatagt aaatggggaa agtataccaa      4800
     atgttaaagt tgcgaggatt cttggtattt ggcttgatag tagggcaacc ttcaagaaac      4860
     atttcaaaaa cactatcaac gcattacaga atcgtttaaa cttcatcaga gcaatagctg      4920
     cccgtgctca tagaagtgta atttggagaa tagctaacgc aacttgtatt tcgaagctgc      4980
     tctatggaat agagcttttt ggactaagtt gcatagaacc atataaacct gtattcaata      5040
     ggttgattcg attagcctca ggagcattta ggacatcgcc ttctttatca ctggccattg      5100
     agagtggcct acttcctttt aaagaaagag tctcattggc atatatccga agttattgca      5160
     aacttgtaga gaaaagccct caaatccgac cagcattaga agaaaacata gagcaactgt      5220
     ctgtgactct ttttggagaa agttttccag caattagtaa gcttcatcgt ttcgggtatc      5280
     ggccgtggta ctatcctcgg cccaaagtgg attggacagt gaaagcgaga tttcaagttg      5340
     gacaaggtgc tcacaaagcg caggccatcg taaatgaact tctcaacagt aaatatatgc      5400
     agcatacaaa aatctacact gatggatcaa aagacgcgac agcggttgga tgtggaataa      5460
     tcggaccgaa ttttaagata gaaggccaac ttccaaaatg ctgttcaatt ttttctgcag      5520
     aagcggctgc acttgcaatc gctgtatatc atgctggtaa tgcaccaacg gttattttaa      5580
     cggactcagc tagctctctc tctgcgcttg ataaaggaaa catcatgcat ccttttattc      5640
     aggctattga gacatactcc gatggcaaac aagtgacttt cttatggata ccgggtcatt      5700
     gcgcaatatc cggaaacgta gaagctgatc acgctgcaaa gaagggaaga acaagtttac      5760
     ctgttgaata tgaagtacca gctatagatg caatcaggtg gacaaaaaat aaaattaaca      5820
     atcagttgca aataagttgg aatgaaaata cggttgataa tttggcatta gtaaaacaaa      5880
     atattggtaa atggtgtgat caaaagaaaa aaagtgatca aagaattctt acaaggtgca      5940
     ggataggcca tacgcgattg actaaatgcc atttattcca aaacaaagac cctgaaattt      6000
     gtgatagttg taatactcca ttagatgtaa agcatatttt actagaatgc agaaaattcg      6060
     atgacattag aaacagaata ggaatcaatt caaatatcgc catagcttta ggaaataaca      6120
     aaaatgaaga agagaaaatg ttaaaatatt taaaggatac aggactttat agtttacttt      6180
     gaacagaact ttagattaat aagaggcgaa tgaattgaaa atttaaagcc tctataaaaa      6240
     taaagcaaaa aaaaaaaaa                                                   6259
//
ID   I-71_AAe    repbase;    DNA;    INV; 7344 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-71_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7344
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1342-1342 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..2188
FT                 /product="I-71_AAe_1p"
FT                 /translation="MDLASGQNFRPGDPGGPGGGHKLGLNWRQGEYMGPTL
FT                 PAFMDRDGTAGSLQYLRMQTTAGTMPQDPFLLRISVEKHLGARIEGAFKEN
FT                 RGMSYVLKVRSSAQFDKLLRMEKLCDGTPVSISEHPQLNQRQCVVSNQDVA
FT                 GLSDEYLKSQLAAQGVKDLRRIRRRLPDGSFMNTPTIILTISGTVIPEHID
FT                 FGWTRCKTRNYYPSPMLCFRCWTFGHTGKRCTEPHRICGRCCKVHPEHQAP
FT                 VSTQNGNEVSTSFRPEELPSENQDMNRFVCSEPVFCKNCKADDHSVSSRKC
FT                 PIYLKEVEVQKIRVDCNISYPQARREFEARQNASTSAVTFSGVVAGSKDVE
FT                 IGSLKAAIRQMQADAKAKDVRMAEMETALRGPSVGERLDMVREHGTIEQLI
FT                 KQVADLTATVQKLQQTIELKDEIISKLMVERKCTTLNESPPTAFSIADSHG
FT                 EMPVSQESIEVIPATANPKLNAKVQKWIDQTTSGSKKNCVLPKDTGTTVTK
FT                 ADKRHKKPNKNSTEDSMSTDESIASVLSHRTNNTNISIPNKRNHEKTDSSN
FT                 GSDNALNLRRNTKTRKQEEKTKSNRKK"
FT   CDS           2219..6943
FT                 /product="I-71_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="INGSHASGNTDTNTFNPSYYIEPDTIKDRTEQTYEEI
FT                 PIIENSQTVQAPDNGVTDSTEAIPRSNIFTTSGTHKGVKTRSPQSPILRLD
FT                 SQGPVGAEAKAVPEPTDNLWRPVSIGRGTHKGVKTCSPMDSAGVKSTDYIQ
FT                 DTLAFRQRAKFETPNPSKDYEGVKLSTRRYPQRNRRPPDKFTMERPVSKSP
FT                 LNGPFPALGPEASNAELYDILHKVRYGYSADIAPTTSHSSGWTFEASQRQF
FT                 PKNLDRCPVGPRGPIASHETIEDNGKSDCLTDNTAFFRTLGTVQPLADNCH
FT                 KPNHSSHPESQNPNEISQWIPTISPPFCAVGTSLPLAGGTLPPPTGGALSR
FT                 SATPTLSHTGSEIPHNNLNRNQTTLAVQWNMNGYFHNLPDLEMIVDRLRPI
FT                 TLAIQEIHRVTVARMNKTLRQQYKWYVKTGNNIYQSTAIGVLADIPTEELE
FT                 IDTDLPIIGVRIPWPFPVSIISFYLPNGRIPDLENCLREILDQVPSPVILL
FT                 GDANGHHMAWGSRHNDARGAIITGLAGQYDLTILNDGSSTFLRGNTESSID
FT                 ISLVSARLTNRLLWAVEQDLHSSDHYPISLTLEGTSTPQTTRRPKWMFEQA
FT                 DWPAFQSEIDVRLASSPPESLEEFADLLRSTASQTIPRTSPKPGRRALYWW
FT                 NEDTRRAVKMRRKKLRKLRKLQKKLPEEHPDRTKAQEEYSASRNGCRQTIR
FT                 NAKEASWTEFLDGINEEQTASELWRRINCLQGKRRMKGLALKVDGLLTRDP
FT                 ASIADALADQFQKLSSFQRYPESFRNLLQSPETAIRDFPVPPNKGQSFNLE
FT                 FTIDELEFALKKSKGKSAGPDEIGYPMIKYLPPSGKLALLKGINREWLYGT
FT                 LPETWNHSLVIPIPKNSGPPSDAGSYRPIALTSCLSKVMERMVNRRLISFL
FT                 EDKRLLDHRQHAFRSGFGTSTYLAALGQILDDSFQKGEHVEIASLDLAKAY
FT                 NRAWSPAILQKLANWNISGNMLAFIKNFLNGRTFQVLIGNERSKISYEETG
FT                 VPQGSVLAVTLFLVAMSDVFLALPKGVFILVYADDILLLVSGKHPKSTRRK
FT                 LQAAVSAVERWAKKVGFDMAAEKCARIHICNSNHRPPGTVSINKTPIPIKN
FT                 RVKILGVTLDRNLSFQAHFKNVKVSCRNRVSLMRSISTKRTRSNRTTLKNV
FT                 MDAVVCSRLLYGIEVTCRNLDELIKHLAPIYNKCIRHVSGLLPSTPALSAC
FT                 AELGVLPFRHKTILALCNRTIGYLEHTKNQGPVCFLAKQANLALASVADVQ
FT                 LPPVAGLHRRGPRSWTAKAPKTDGTIQTSFRKKATPERVKAHFYQRISEAY
FT                 KNHEIRFTDGSKLGDQVGFGVLSDQIELSYSLPNGSSVFSAEAAAIHQAII
FT                 SPSDKPLLIVTDSASVLAAIKSPTNKHPYIQGIQVALDRTKREVVFMWVPG
FT                 HSGIAGNEKADALAGTGRNRPRLTRKIPGDDIKTWTKNRVWNAWSQEWRQE
FT                 RTLFCRKVKNTINPWKDLPNRREQVVLSRLRTGHSRISHDMSGETADFRRH
FT                 CESCGERCTIEHVISNCPSLEDLRRIHDITNVVRALQNDPSFERQLINFLK
FT                 DARMYDCV"
XX
SQ   Sequence 7344 BP; 2162 A; 1833 C; 1695 G; 1654 T; 0 other;
     tcagtcgaaa gcataccgcc gtcgcgttcg aacgcttttc tgtatagctc tgaacttatc        60
     gaatcgagtt tctttgttgc gctccgaaac aatcaactat cgtctagtgt tctacgctgg       120
     ggccgatccg gtgtcggagc attttgcatt gtctcccgga agataacttg ggctgcacac       180
     aggggcccat tgttctctgt tggttgaaag ggaatccacg tggtgttgct agtcgtaact       240
     ttaaagcggt gttttttttg cctcttttgc ctcccagact aagtgcgact cgcgtgcagg       300
     tgttcgataa tccactgagt tggacacagt ggtctccaat ttgctaagac ggactacagt       360
     gacagtgtga gggtgttgtt cgagtgcagg cctaagtgag ttgtgtgaga agcaaccaat       420
     ttggcgttag gtgggcgtgt aagttggtaa ccgccgctct gccagtatgg acctggcaag       480
     cggccaaaat tttcgccctg gggatccagg agggcccgga ggtgggcaca agctcggttt       540
     aaactggcgt caaggggagt acatgggacc cacactccca gcgtttatgg accgggatgg       600
     tactgcgggt tcgctccagt accttaggat gcagaccacg gctggaacga tgcctcagga       660
     tcctttcctg ctgcgcatat ctgttgaaaa acacctcgga gcacggattg agggagcgtt       720
     caaggaaaat cggggaatgt cgtatgtgct aaaggtacgt agttcagccc agtttgataa       780
     actgctccgt atggaaaaac tgtgtgacgg aaccccggta tccatcagtg agcatcccca       840
     attgaaccaa agacagtgtg tcgtctctaa tcaggatgtt gctggtctca gcgacgaata       900
     cctgaaaagc caacttgctg cacaaggagt gaaggacctt cgtcgaatcc ggcgccgtct       960
     tccggatggt tcgtttatga acacaccgac gatcattcta acaatcagcg gcacggtcat      1020
     cccagaacac atcgacttcg gatggacaag gtgcaaaacg agaaactact acccgtcccc      1080
     gatgctgtgc tttcgttgct ggacttttgg gcacaccggt aaacgatgca ctgaaccgca      1140
     tcgtatctgc ggccgatgct gtaaggttca cccggaacat caagcccctg tttctacgca      1200
     aaacggaaat gaagtaagta catcgtttcg tccagaagaa ctccctagcg aaaaccagga      1260
     catgaacaga tttgtttgct ccgaaccagt cttctgcaaa aattgcaagg ccgacgacca      1320
     ttctgtatct agccggaaat gccctatcta cctaaaagag gtagaagttc agaagataag      1380
     ggttgactgt aacatctctt accctcaagc tcgtcgcgaa ttcgaagcac gtcaaaacgc      1440
     cagtactagt gccgttacct tctccggagt tgtcgctggt agtaaggacg tggagattgg      1500
     aagtctcaaa gcagctatcc gacagatgca ggcagacgca aaagctaaag acgtgaggat      1560
     ggcggaaatg gagaccgctc ttcgaggacc aagcgttggc gaacgcctag atatggttcg      1620
     tgaacacgga actattgagc agctgatcaa gcaagtagcc gacctaactg ccactgttca      1680
     aaaattgcag cagacgatag aacttaaaga cgaaatcatc tctaagttga tggtcgagcg      1740
     aaagtgcaca accctcaacg aatcgccacc aacggccttc tcgattgcgg attcccatgg      1800
     agaaatgcca gtttcgcagg aatcgattga agttatcccg gcaaccgcaa acccaaaatt      1860
     gaatgcgaaa gttcaaaaat ggatcgacca aaccacctca ggcagcaaga agaactgtgt      1920
     attgccgaaa gatacaggga ccactgtgac taaggctgac aaacggcata agaaaccaaa      1980
     caaaaactcc actgaggaca gtatgtcaac cgacgaaagt attgcctctg tgttatcgca      2040
     ccgaacaaac aacaccaaca tctccatacc taataaaagg aatcacgaaa agacggattc      2100
     cagtaatggt tccgacaatg ctctcaacct gcggcggaac accaagaccc gtaagcagga      2160
     agagaaaaca aagagtaata gaaagaagta aaacccccaa cctgctcagt tccactaaat      2220
     taacggctcc cacgcaagtg gtaatactga taccaacact ttcaatcctt catattacat      2280
     cgaaccagat acgataaagg atagaactga gcagacgtac gaagaaatac caattattga      2340
     aaatagtcaa acagtacagg ctccggataa cggggtcacc gacagtacgg aagctatacc      2400
     acgttcgaat atattcacta ccagtgggac gcacaagggc gtcaaaaccc gttccccaca      2460
     atccccaatt ttgagattgg acagtcaggg ccccgtcggt gcggaagcca aagccgtacc      2520
     ggaaccgacg gacaacctct ggcgtccagt ttcaattgga agagggacgc acaaaggtgt      2580
     caaaacctgt tcccctatgg acagcgctgg agtcaagtca acagattata tacaggatac      2640
     cctggccttt aggcaaaggg cgaagttcga gacgccaaat ccctcgaagg actacgaggg      2700
     agtcaagcta tccacaagaa gatacccaca acgcaaccgt cgacccccag ataaatttac      2760
     aatggaacgt cctgtcagca aatctccact caatggacca tttccagcac taggacctga      2820
     ggccagcaat gcagaattgt acgacattct gcacaaagtg agatatggat attctgctga      2880
     catcgcccct acaacctctc acagctcagg ctggaccttc gaagcttcgc aacgacaatt      2940
     ccccaagaac ctggatcgat gccccgttgg acctcgaggc cctatcgcta gccacgagac      3000
     gatagaagac aatggtaagt ccgactgctt gactgacaac accgcttttt tccgcaccct      3060
     cggcacagtc cagcctttgg cagacaactg tcacaaaccg aaccattcta gtcatcccga      3120
     gtcacaaaac cccaatgaaa tatcccaatg gatcccaacc atttctcccc ctttttgcgc      3180
     tgtcgggaca tctctgcctt tggcgggtgg aacactacca cctcccactg gtggagctct      3240
     atctcgttca gcaaccccca cgctctcaca cactggctct gaaatccctc acaacaatct      3300
     gaaccgaaat caaactacac tcgcggttca atggaacatg aacggttatt tccacaatct      3360
     gccggacctc gagatgatag tcgatcggct ccgtcctatc actctcgcga tacaggagat      3420
     tcaccgtgta accgtggcac gaatgaacaa aacattgagg caacagtaca aatggtatgt      3480
     taaaactggc aacaatatat accagtcaac ggcaattgga gtattggcag atattcctac      3540
     agaagaactt gaaatcgaca cggatttgcc catcatagga gtccgcattc cgtggccctt      3600
     tccggtttca atcatctcct tttacctccc aaacgggcga atcccggatt tggaaaactg      3660
     cttgagagaa atactcgatc aagtgccaag tcctgtaatc cttctcggcg acgcaaatgg      3720
     acatcacatg gcatggggca gccgccacaa cgatgcccgc ggggctatca ttactggact      3780
     agccggccaa tacgatctta cgattttaaa cgatggttct tccacattct tacgtgggaa      3840
     caccgaaagt tctattgata tatctctcgt ttcggcccga ttaacaaacc gtcttctttg      3900
     ggccgtggag caagatctcc acagcagcga tcattatcca atttctctaa cattggaagg      3960
     tacatcaacc ccgcaaacga cacgccgacc caaatggatg ttcgaacaag cggactggcc      4020
     ggccttccaa agtgaaatcg atgtcagatt agcctcctct cccccagagt cgcttgagga      4080
     attcgctgat ctattacgct ccaccgcatc tcaaacaatt ccgcgaacca gtccaaaacc      4140
     cggtcgccgg gcactctatt ggtggaatga ggacacacgg agagctgtca agatgcgccg      4200
     gaaaaaatta agaaaactac ggaaactaca gaaaaaactt ccagaggagc atcctgatcg      4260
     caccaaggcg caggaggaat atagcgcatc cagaaatggc tgccgtcaaa caatacgaaa      4320
     tgcaaaagag gcatcttgga cagaattttt agacgggata aacgaggagc aaacggcatc      4380
     cgaactctgg agaagaataa actgtcttca ggggaaaaga cggatgaaag gcctggccct      4440
     aaaggtagac ggactgctca cgcgagatcc tgctagcata gcagatgccc tggcggacca      4500
     attccaaaaa ctttcatctt tccagcgata ccctgaaagc ttcagaaact tgctgcaatc      4560
     cccggaaacc gcaatacgtg attttccagt gcctcctaac aaaggacaaa gtttcaatct      4620
     tgagttcaca attgatgaat tggagttcgc tctgaaaaaa tctaaaggca aatcagcggg      4680
     gccagacgaa ataggatacc ctatgatcaa gtatctgccc cctagcggta aactggcact      4740
     actgaaaggc attaatcgtg aatggcttta cggaactctt ccggagacat ggaaccacag      4800
     tctggttatc ccgattccaa agaactcggg tccaccgtcg gatgcaggta gttatcgacc      4860
     aatcgcactc accagctgcc tatccaaggt aatggagcgg atggtaaatc ggagattaat      4920
     tagcttcctg gaagacaaac gcttattgga ccaccgacaa cacgctttcc gatcgggttt      4980
     tgggacaagt acctacctgg ctgcactagg gcaaattttg gatgattcat ttcaaaaggg      5040
     cgaacatgtc gaaatcgcct cgttagatct ggcaaaggcc tataacaggg cctggagtcc      5100
     agcaattctc caaaagctcg ctaattggaa catctctggc aatatgttgg ccttcattaa      5160
     gaattttttg aacgggcgta cgtttcaagt tctgattggg aatgaacggt caaaaatttc      5220
     ttatgaagaa acaggggtgc cacagggatc tgtccttgct gttactttat ttttggtggc      5280
     aatgagcgat gtattcttgg cactccctaa aggggtcttc attctagtat acgccgatga      5340
     tatccttctc ttagtaagcg gtaagcatcc taagagtaca agaaggaagt tacaggcagc      5400
     agtctcagct gtggaaagat gggccaaaaa ggtaggattc gatatggcag cggaaaagtg      5460
     cgctcgcatt catatttgca actctaacca ccggcccccg ggaacagtct ccataaataa      5520
     gaccccgata ccgatcaaaa atcgagtaaa aatccttggt gttaccctcg atcggaatct      5580
     ttcctttcag gcccatttca agaacgtaaa ggtgtcctgc agaaaccggg tcagtttaat      5640
     gaggagtata tcaacgaagc gcactcgaag taatcgaact acgctgaaga acgtgatgga      5700
     cgccgtagta tgtagtcggc tattatacgg cattgaagta acctgcagga atttggatga      5760
     gctaatcaag cacctagcgc cgatctacaa taagtgcata cgtcacgtgt caggactgct      5820
     tccgtcaact cctgctttgt cagcatgtgc tgaattggga gtccttccct ttcggcataa      5880
     aactatcctc gctctctgta accgtacgat agggtatcta gaacacacta aaaatcaagg      5940
     accggtttgc ttcctagcaa agcaagcaaa cctggccctt gcatcggtgg ccgacgtgca      6000
     gcttccaccg gtggctgggc tccaccgaag gggaccacga agctggacgg ccaaagcccc      6060
     taaaactgat ggaaccatac aaaccagttt tcgtaaaaag gccacacctg agagagtgaa      6120
     agcacacttc taccagagga tttcggaagc ctataagaac cacgaaatta gattcaccga      6180
     cggttcgaag ttaggagatc aagtcggttt tggggtactg agcgaccaaa ttgaactatc      6240
     ctacagctta ccaaatggca gctcagtttt ttcagctgaa gcagcggcca ttcatcaggc      6300
     aatcatatcc ccaagtgaca agccacttct tattgtaacg gactccgcca gtgtcctggc      6360
     tgcaattaaa tcaccaacta ataaacatcc atacatccag ggcatccagg tcgcactgga      6420
     tcggaccaag agagaagtag tttttatgtg ggtcccgggc cattccggaa tcgctgggaa      6480
     cgaaaaggca gatgcactgg cggggactgg tcgaaataga ccacgtctaa caagaaaaat      6540
     tcccggagac gacatcaaga catggactaa aaacagggtc tggaatgctt ggtcccaaga      6600
     gtggcgacag gaacgaacgc tattttgtcg taaggtcaaa aatacaatca atccatggaa      6660
     agacctacct aacagaagag agcaggttgt tctatcaaga ctgaggactg ggcacagcag      6720
     aatatctcat gacatgagtg gagaaacagc cgatttccgt cgacattgcg aatcgtgcgg      6780
     agaacgatgt actatcgagc atgtcataag caactgtcca tctctcgagg atttaagaag      6840
     gatacacgac atcaccaacg tggtcagagc gcttcaaaat gatccgtcat ttgagagaca      6900
     gctgataaat ttcttgaagg atgcaagaat gtacgattgt gtttaagttg gaattccaca      6960
     atagcagact agcagttaat tgctcaattc tacggctaag tggtgttcag ccaatacctc      7020
     gatcgaacac acgaatcctc tatactaaca actccccttt cctttaaaaa gcaccgtaca      7080
     aaacaacaca attattgtaa ctatcacact atcataagac actttgacaa ttggtgtatt      7140
     ttgtaaagcc tttagtttca cactagtttt cacaataagt atctagactt aagcgatgct      7200
     ctgtaataac aaaaaaaata tctgtggaac tctgtaatct ggtggtaccc ttaaggtagc      7260
     tccagaattt gttttttttt ttccatatgg agatgaacca gccacgggct gaaaatctcc      7320
     ctaataaagc taataataat aata                                             7344
//
ID   I-72_AAe    repbase;    DNA;    INV; 6990 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-72_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6990
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1343-1343 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           413..2152
FT                 /product="I-72_AAe_1p"
FT                 /translation="MEPANGTPLRPGDPGGPGGGRAHPNNWKDGEYLGARL
FT                 PSFMDRDGTAGPLQYLKMTAKNGSIPQDPFLLRLSVEKYIGAAIDGAYKEN
FT                 RGVSYVLKVRSNSQFNRLLRMQKLNDGTEISITEHPQLNQRKCVVSNVDST
FT                 DLTDQYIKEQLASQGVKDIRRIRRRQPDGSFINTPTIILTISGTVIPDHID
FT                 FGWSRCRTRNYYPTPMQCYRCWRFGHTNSTNKCPEPFRICGKCCKVHPEDK
FT                 VPKTADPVMGYSATTATDNETPREPATTGLIQTRSECVDPIFCWNCNTNDH
FT                 PASSKKCPIYVKELAIQHIRVDHNLSYPQARREYEAQNGIGNRTDTFAGAV
FT                 NLSKDVEVEGLKTTVKQLLEDSKRKDERIAEMERALGNRSNVNDRLDKIRE
FT                 HGTIEELVRQVAALTATVEKLQKDLVKKDAIIKKLRDGKETETIPTPLVMS
FT                 TAESEKESAFTLSSNEDTSLKESITQKVSLWIEEMKSEMNEEASAETKKEI
FT                 CKEKKRKQKKAKKPKTTENDISDSSMRSTHSHKLGKTANSSITEQPNSSKR
FT                 THDIESISDSTDTSLKAKRNSKIQKADEDVMIE"
FT   CDS           2233..6762
FT                 /product="I-72_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MPIINLDDDITTESTEPQHNTPLINEHTAEVSGSRGP
FT                 ASAEATPPPELPDHPRHPSPPPAVGTHKGLTTCTPNTPEDGRDRQGPVSAE
FT                 AKVVPELADNPCHLDRSGRGTHKGSTRSPLDAEGVKKPARPLMAPVFIPYH
FT                 RKSTRSTISKPSVELKINTNNTPKDDEEPKLDTRRYPKRIRSAPDRYCPCL
FT                 PRTKNANRLHRALTEAEATNADVYDRMVQKRDGRSSIPVAGTSHLRPRRLA
FT                 HVPHQRAADCVKDLSGHSRSSNLGVGLYLPLASDKLTIASSGALSCPFSED
FT                 SSKDVTRGHTVFAVQWNMNGYLNNLPDLEMLVNRHHPVVIALQEIHRTNVA
FT                 TMNNTLRRQYRWYTKTGANIYQSAGIGISAEIPADQINIETDLPIVGVRIP
FT                 WPFPVSVVSLYLPNGKLVNLKKSLEEIFRKIPGPLIVMGDVNGHHKAWGSP
FT                 HNNTRGSIVAALANQLDLIILNDGSTTFSRGRSETVVDVSLASAAITHRLL
FT                 WSAEPDLRGSDHTPIFLKLDSNATPETSRRPRWLFETADWLTYRSVLDEKL
FT                 NSSPPESIQDFINHISSTSSETIPRTSPNPGRRALHWWTSETCKTVKLRRK
FT                 TLRVVQKLRKKLSPDHPDLLQALEQYHTARNTCRQIIREAKEKSWTEFLDG
FT                 INEDESASELWRRINCFQGKRRSRGIALMVDDCLSRDPAVIADALADYFHD
FT                 ISSYQHYPDGFRIAHPTPDEAIRRFVVPPDRGQDFNVPFTFNELEFALKRA
FT                 KGKSAGPDDIGYPMLKNLPLNGKLVLLDMLNRLWTTETLPESWKHSFMIAI
FT                 PKNTGPASDAKSYRPIALTSCVVKIMERIVNRRLVGFLEDNQLLDSRQHAF
FT                 RPGFGTGTYLASLGQILDEALKAGEHVELASLDLAKAYNRTWTPGILQKLV
FT                 NMGISGNMLAFVRNFLEGRTFQVLVGNHRSKIVQEETGVPQGSVLAVTLFL
FT                 VAMNGVFLVLPKGVFILVYADDILLLVRGKHPKMIRRKLQAAVSAVAKWAT
FT                 QVGFDMAADKCVRVHVCDSKHRPPGKINIQGLPIPTRNYVKILGVTIDRNL
FT                 SFHAHFTAVKSACKTRISMIQSISGKRTRSERTTRKRVAEAVVNSRLLYGI
FT                 EISGRSFDDLVKTLSPTYNNCVRALSGLLPSTPAVSACVEAGILPFQYKAT
FT                 MALCCRAVGYLERTVGRGQDCFLAEQANRALREVANATLPSVVELHRVGPR
FT                 SWSAKEITVDKTIKNHFRRNANPVAVQGCFLERLSEAYPNAEVYYTDGSKL
FT                 ANRVGVGVFGSDTEISLRLPSQCTVFTAESAAIYLAAKKQTDRMKLIVSDS
FT                 ASAITAICSDTNKHPFIQAAQNLLANTKKQATLMWVPSHCGILGNEHADRL
FT                 AAMGRQEALLTPKVPGDDVKSWVKTMIKSAWALKWDRDRSLFLRRIKADTA
FT                 LWTDIPNWREQKVLSRLRTGHSRLSYNMSGSGSFRKTCDICKVHNTTEHII
FT                 SCCPKYDLLRRQHDITSTSRALQNNSVYERTLINFLREAGLFLEI"
XX
SQ   Sequence 6990 BP; 1989 A; 1819 C; 1601 G; 1580 T; 1 other;
     gagttcggga cattgttgtt attactagca accgcgtwcg cgctcaacat actgcccaat        60
     tttcgaggtt ttagtgattt ttttctccga ataagtcact ctacactaag tgactagtgt       120
     atactagtga ctatactaaa agttcgatcg atatcggtta agttttggga aaaaaccagc       180
     gaaattagtt agtccgcgtg caaaaaacat tcaccgtcac tgcattgttc gaccggcaca       240
     cggtatcatt aattgaaatt ctgcagttgt gtgtggcttg gtgacccgag cgagaagagg       300
     tgtcacaaag tgaacaaact gttttttttt ttttttctct ctgtgtttca acaaaagtga       360
     tttttccgtg gtggtaaagt ggtaaagtca ccttcctcac cgtttcgccg gcatggagcc       420
     ggcgaacggc acccccctcc gcccagggga cccagggggc cctggagggg gtcgtgccca       480
     cccaaataat tggaaagatg gtgaatactt gggtgctcgc cttccaagtt ttatggaccg       540
     agatggtacg gcaggtcctc tgcagtacct gaagatgact gccaagaacg gatccatacc       600
     tcaggaccct ttccttctgc gtctatccgt ggaaaaatac atcggcgcgg caatagatgg       660
     agcatataaa gagaaccggg gagtctccta cgttttgaag gtacgtagca actcacagtt       720
     caaccgttta cttcgaatgc aaaaattgaa tgacgggaca gaaatctcaa ttaccgagca       780
     ccctcagctg aatcagcgaa agtgtgtagt gtctaacgtc gactcaacgg acctaactga       840
     tcagtacatc aaagaacagc tcgccagtca aggtgtgaag gacatccgcc ggattcgacg       900
     tcgacaaccg gatggctcct tcataaatac accgaccata atccttacca tcagtggtac       960
     cgtcatcccg gaccacatag acttcggatg gtcccgttgc cgaacccgca attactatcc      1020
     tacgccaatg cagtgttacc gctgttggcg ttttggtcat accaactcca ccaataagtg      1080
     ccctgaaccg ttccgcattt gcggaaaatg ctgcaaggtt catccagagg acaaggtacc      1140
     aaagacagct gacccagtta tgggttattc cgctaccact gccactgata atgaaactcc      1200
     gcgagaacct gctactaccg gcttgattca aacgcgttcg gaatgcgtcg acccaatctt      1260
     ttgttggaat tgcaacacca atgatcaccc agcctccagc aaaaagtgcc cgatttatgt      1320
     gaaggaactg gctattcagc atatccgtgt ggaccacaac ctctcttacc cccaggcccg      1380
     tcgcgagtac gaagcacaga acggaatagg taatcgcacg gacactttcg ctggagcagt      1440
     caacctgagc aaggacgtcg aagttgaagg gcttaagacc accgtcaaac aactccttga      1500
     ggactctaag agaaaagacg aaaggattgc tgagatggag cgcgctctgg gaaatcgtag      1560
     taacgtcaac gaccgccttg ataaaattcg tgaacacggc acaatcgaag agttggttcg      1620
     ccaagttgct gcactcactg ctacggttga gaaactccag aaggacctag tgaaaaaaga      1680
     tgcaatcatc aagaagcttc gagatggaaa ggaaaccgaa accataccca cccccttggt      1740
     gatgtctacc gctgaatccg agaaggagag cgctttcact ctttcttcta acgaagatac      1800
     ttccttgaaa gagtctatca ctcagaaagt gtccctatgg atcgaagaaa tgaaaagtga      1860
     gatgaacgag gaagcgagcg cagaaacgaa aaaggaaatt tgcaaggaga agaagcggaa      1920
     acaaaaaaaa gccaagaaac ccaaaactac cgaaaacgac ataagtgact caagtatgag      1980
     gtccacccac tcccacaaat tgggtaaaac cgcaaactca agcatcaccg aacaacccaa      2040
     ttcatccaaa aggacccacg atatcgaatc cattagcgac tcgaccgata catccctcaa      2100
     ggccaagagg aactccaaaa tccagaaggc tgatgaggat gttatgatcg aataagctct      2160
     tctccattat gctcagtcct cccatacgac cgacagcagt ctgtacgaat tattcatcaa      2220
     ccccatatct tcatgccaat catcaacctc gatgacgata tcaccacgga gtcgactgag      2280
     ccacaacaca acactccact catcaatgaa catacagcgg aggtctcggg tagccggggc      2340
     cccgccagtg cggaagctac acccccaccg gaactgccgg accacccccg acacccgagt      2400
     ccacctccag ctgtcgggac gcacaaaggt ttaaccacct gtaccccgaa taccccagag      2460
     gacggtcgag accggcaagg ccccgttagt gcggaagcca aggtcgtacc ggaactggcg      2520
     gacaaccctt gccatctcga tcggtctgga agagggacgc acaagggttc tacccgttcc      2580
     cctttggacg ccgagggagt gaagaaacca gcacgaccac tgatggcccc agtatttatc      2640
     ccataccacc ggaagagtac ccgatcaact atcagtaaac cttcggtaga gctaaagatc      2700
     aacacgaata atacaccgaa ggatgacgag gagcctaaat tagacactag gagatacccc      2760
     aaaaggatcc gatcagcacc tgaccggtac tgtccgtgtt taccacgtac caaaaacgcg      2820
     aaccgcttac accgcgctct cacggaggca gaagcgacta atgctgatgt ttatgaccgg      2880
     atggtacaaa aacgtgacgg ccggagctct ataccagtag ctggtacctc ccacctgcga      2940
     ccgcgaagat tggcacacgt cccgcatcaa agagcagctg attgtgtaaa ggacctctcg      3000
     ggacattcca gatcatcaaa tttgggagtc gggttatatc tgcctttggc aagtgacaag      3060
     ctgacaattg cgtctagtgg agccttatct tgtccatttt cggaagattc cagtaaagat      3120
     gttactcgag gacatacagt tttcgccgtg caatggaaca tgaatggtta cctaaacaac      3180
     cttcccgacc tggagatgct ggtgaaccgt caccaccctg tagtaattgc attacaggag      3240
     atccatcgta caaatgtcgc cacaatgaac aatactctcc gccgccagta tcgatggtat      3300
     acaaaaactg gagccaatat ataccaatct gccggcatcg gcataagcgc cgagatcccg      3360
     gccgaccaaa tcaacatcga aacggacctc cccattgttg gagtacgtat tccatggcct      3420
     ttccctgtat cagtagtttc actctacctc cccaacggaa aacttgttaa cctgaaaaag      3480
     agtttggaag aaatattccg gaaaattcct ggtccgttga tcgtcatggg ggatgtgaac      3540
     ggccatcaca aggcgtgggg tagcccccac aataacaccc gcggctccat agttgcagcg      3600
     cttgccaatc agctagatct tatcattcta aacgatggat caaccacttt ctcacgcggg      3660
     cgatcagaaa cggtagtcga tgtctcactg gcctcagcag ctatcacaca tcgcctccta      3720
     tggtcagccg aaccggacct gcgtggaagt gaccatacac caatctttct caaactagat      3780
     agcaacgcta cgccagaaac aagtcgtcgc cctcgatggc tatttgaaac ggcagactgg      3840
     ctgacctacc gatctgtgct cgacgaaaaa ctgaactcct ctcctccgga gtctattcaa      3900
     gatttcatca atcatatcag ttctacctct tccgaaacta ttccgaggac tagtcctaac      3960
     ccgggtcgcc gcgcacttca ttggtggact agtgagacct gtaaaaccgt taaattacgt      4020
     agaaaaacgc tacgagtagt tcaaaaacta aggaaaaaat tatctcccga ccatcctgac      4080
     cttctccaag ctctagagca gtaccacact gcccgtaaca cgtgcaggca gatcatacga      4140
     gaagctaaag aaaaatcctg gacagagttt ttggatggaa taaatgagga cgagtctgct      4200
     tctgaactct ggcgtcgaat caattgcttc caaggcaaga gaagatctcg agggatagcc      4260
     ctcatggtcg acgactgctt gtctcgcgac ccagctgtca tcgcagatgc actggcggat      4320
     tatttccatg acatttcctc ctatcaacat tatccggacg gttttcgaat agctcaccca      4380
     actccggatg aagcaataag acgatttgtt gtcccgccag accgcggcca ggacttcaac      4440
     gtgcctttca ccttcaatga actcgagttt gccctcaaga gggcaaaggg aaaatctgct      4500
     ggacctgatg acattggcta cccgatgctg aaaaacttgc ctttgaacgg caaacttgtg      4560
     ctgcttgata tgctcaatcg actatggacc accgaaacac ttccagaatc ctggaagcat      4620
     agcttcatga tagcaattcc caaaaacact ggaccagcat cagacgctaa aagctatcgc      4680
     cccatcgccc tcacgagttg cgttgtgaag attatggaaa gaatcgttaa ccgccgcctg      4740
     gtaggtttcc tcgaggataa tcagctacta gatagccggc agcatgcgtt ccgtccaggt      4800
     ttcggaacgg gaacttattt ggcttccctc ggccagattc tagacgaggc tttgaaggct      4860
     ggtgaacatg tcgagctagc atctcttgat ctagccaagg cttacaatcg gacgtggacc      4920
     cccggtattc tccagaagct ggtaaatatg ggaatctctg gaaacatgtt agcgtttgtt      4980
     cggaactttt tggaaggacg gactttccaa gttcttgtag gaaatcatcg ttctaaaata      5040
     gtccaagaag aaacaggtgt accgcagggc tccgtcctgg ctgtcaccct gtttcttgtg      5100
     gccatgaatg gagttttctt ggtactaccg aagggcgtct tcatcctggt atacgctgat      5160
     gacattctgc tgcttgtgag aggaaagcat ccaaaaatga tacgccgtaa gctccaggcg      5220
     gctgtttcag ctgttgctaa atgggctacc caagttggtt tcgacatggc ggcggacaaa      5280
     tgtgttcgcg ttcacgtgtg cgactccaaa catcgcccac ctggtaaaat aaacatccag      5340
     ggccttccta taccgacaag aaactacgtc aaaatactcg gtgtcacgat agatagaaac      5400
     ctatcctttc atgcacattt cacggcggtc aaatccgcct gtaagactag gatcagcatg      5460
     atccaaagta tctcgggaaa gcgcacccga agcgaaagga ccacccgcaa acgagtagct      5520
     gaagctgttg tcaatagccg tctgctgtac gggatagaaa tatctggaag atctttcgat      5580
     gaccttgtta aaaccttatc acccacgtat aataattgtg ttcgtgcgct atccggcctt      5640
     ctcccctcaa ctcctgcagt ttccgcatgc gtagaagctg gaatcctccc ctttcagtac      5700
     aaggcaacca tggcattgtg ttgtcgcgca gttggctacc tggaaagaac cgtaggtaga      5760
     gggcaggact gtttcctcgc ggagcaggca aaccgtgccc ttagagaagt ggccaacgcc      5820
     acgcttccct cggtggtgga actccatcgt gtaggaccta gaagctggtc ggccaaggag      5880
     atcacggtag acaaaacaat caaaaaccat ttccgtagaa acgccaatcc ggtagccgtt      5940
     caaggttgct ttttggaacg attatctgaa gcctacccga atgccgaggt ttattataca      6000
     gatggctcca aattggccaa ccgtgtggga gtcggagttt ttggctctga tacagaaata      6060
     tctctccgcc taccaagtca gtgcaccgtc ttcaccgcgg agtcagcagc aatctatctg      6120
     gctgcaaaga aacagaccga cagaatgaag ctgatcgtta gtgactcagc tagtgcgatt      6180
     accgctatat gctctgacac gaataaacat cctttcatcc aggccgctca gaatcttctt      6240
     gctaatacga aaaagcaagc gacacttatg tgggtcccca gccattgcgg cattttgggc      6300
     aacgagcatg ctgatagatt ggctgctatg ggccgccagg aagctcttct aacgcccaaa      6360
     gttcctgggg atgacgtcaa gtcttgggtg aaaacaatga tcaaaagtgc ctgggctctg      6420
     aaatgggata gggatcggtc attgttcttg agaagaatca aggctgacac agccctttgg      6480
     actgatatac cgaactggcg ggagcagaaa gtcctttctc gactccgaac agggcactcg      6540
     cggctctctt acaacatgag tggaagtggt agcttcagaa agacatgcga tatatgcaaa      6600
     gtacataata cgacggaaca tatcattagc tgttgtccca aatatgacct acttcgtaga      6660
     cagcacgaca taacatcgac cagccgagct ttacaaaaca actctgtcta cgagagaact      6720
     cttataaact tccttcggga agccggactt ttcctggaaa tctaaaaccc taagagacgg      6780
     tcgaacgatt atgataaccg ctgagaacca aggacacgaa tagacaaaaa tacgctagac      6840
     agcctaaatt catcatataa aaactctgta acttacactt gctagctggt tgcaccctta      6900
     aggtgccttc agtattttcc ttcttctcga gatgaaccag cctagggctg aaaatctctt      6960
     aaataaagac aataataata ataataataa                                       6990
//
ID   I-73_AAe    repbase;    DNA;    INV; 6820 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-73_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6820
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1344-1344 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2953..6639
FT                 /product="I-73_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASNNCSNRSQSTIVTDSHHRSKPLALQWNINGFYNN
FT                 LVELERLVHDHAPLVIALQESHRATPTAMNATLGKKYLWTSKFGRNIYHSV
FT                 AIGVSIELPYESVTVNSDLPLVAVRITWPFAVTIASLYIPNGRIPDLKTRL
FT                 MEAFDTIQGPIIILGDGNGHHETWGNNSNNIRGRIILDFTTDMNLSILNDG
FT                 SPTFWRGQQETAIDISLASSTIANRLMWKIDTDLSGSDHFPIWIHTNNVTP
FT                 ETSRRPRWRYNQADWSAFQLAIANKMESNPTSIEELSNNIYEAAVETIPRT
FT                 SSTPGRRALHWWSDEVKKAVKKRRKTLRAAKRLPFDHPYKESAMKAYREAH
FT                 YACRQLIREAKEGSWSTFLDGINDSQSSTELWSRVNAIQGKRRTRGIALKI
FT                 DNRTSREPSIIVDALADFFADLSSHRKYPHNFRVKHPIPKVELYSFVVPPD
FT                 RGQVFNQPFSINELNFALNKAEGQSAGPDEIGYPMLKNLPFEGKVALLENF
FT                 NKLWTTGTFPHSWKTSFVVPIPKHTKSAQDVEHYRPIALTSCLAKIIERLV
FT                 NRRLIEHLESNRLIDPRQHAFRAGFGTGTYFATLGQVLNDALQKGDHIEMA
FT                 SLDLAKAYNRAWTPEILNQLVTWNVTGNMLNFIKNFLSDRSFRVIIGNCQS
FT                 KLVNEETGVPQGSVIAVTLFLVGMNSVFKFLPKGVYIYVYADDILIVVTGK
FT                 HPKALRRKLQTAVNAIVRWTSKVGFELSAEKCTRTHICSGNHPVLRKPIMI
FT                 DGKAIPTKKAVKILGVTFDRHLNFRQHFDLVKENCKSRVNLIKSIANKRTR
FT                 SDRKIQMRVADAIICSRLFYGTEITCHAFEDLITRLGPVYNNTIRAISGLL
FT                 PSTPAMSACIEAGALPFKYKAAIAISTKVVSFLERTKSRAATTYITNQANQ
FT                 LLNFTANISLPLVAKRNRFGAQSWQAKEPRIDSYIKSNLNRECLPEVAQAH
FT                 FRKRVRTEYPFTETRYTDGSKTSGANSRRVGFGIYSTSLEEAYGLTEYCSV
FT                 FSAEAAAIFQAASQPCDGPLLIVTDSASALSALQTTTNTHPWIQATQELIS
FT                 ESRRITFMWIPGHKGITGNEEADRLANLGRNERPLIRTTPAADIKLWLKGK
FT                 IKDAWDSEWAQEKECFTRKIKNTTDRWHDLPNRWDQRVLSRIRTGHTRISY
FT                 NFGGSTGFRKQCEICRVHNSVEHFICCCPSMEHLRLKFGIYSIRSALQNER
FT                 NSESSLITFLKNAGMYKAI"
FT   CDS           join(557..2122,2079..2948)
FT                 /product="I-73_AAe_1p"
FT                 /translation="MAASSRGPTPSSWGDGPSHALNPSQIDGSYTGATLPP
FT                 YMDNEQNYGALLLLRISGVDRPLPNVPFIIRKSVQQYVGGRIEGAFPEANR
FT                 ATYALKVRSLRQFNRLLTMSQLIDGTPVHITEHPTLNSTRCVVSCRDVINV
FT                 TDSELLEELKEQGIKEVRRITRSVGGERVNTPSIILTFRGTNRPDHIDFGY
FT                 IRCRTRPYYPSPMQCFNCWCFGHTKLRCQSKSATCGKCSGDHPIPEDKTCP
FT                 NAIFCKQCQTNDHAVSSRSCPQYKVESTIQRVKVDQGLSYPAARRMVEKDL
FT                 GTKSYASTVEASNRDDLGLLNSKIDYLTTLVSNKDSEIADLRAALAERNTP
FT                 SASARSQIDELKTIVANQAKQIETLTNQLSAFLSMVMPAGPSFTTTSSNTP
FT                 VGIAVFPARHATEPTLPTSFVNDQPAVKTQQQIDDLPIGIISDSDSATPDH
FT                 SPNLKDTPRPTRFTKSQSVPKHPRSGTPIPNSSKPSPSPNKTPNKRSINRI
FT                 EPANIQQQKRVKHKSASEGSSAIAKRNIKAPRKAPVLSLNASITCLFSIIS
FT                 LSPPPLDKTASKGSRNTPPNYRRKPERSHIHNKNARREIDGPEPLQSKQVG
FT                 PPQHPATHQCLRLCLDSRGASVPEAIPQPESLDRPRRLGRVPDEEIGASDS
FT                 QGVDRPEAKDPPERSNRLRHPQDEKVIRSYNMKNPTMYPSSLGPFSADVFP
FT                 TPELEDSPWRWEEIGRGTDKGWLSHTPRKDDEGIEAGTEKVEGLKSKKDTT
FT                 SENQRTNEEEKEKIFGGHPGLLSSGGKSHLVLLRLSSLQLSVAFSFNTRAS
FT                 SRWILSPNFY"
XX
SQ   Sequence 6820 BP; 2143 A; 1686 C; 1476 G; 1514 T; 1 other;
     gttttgttaa aattactttg wtaaaagtcc cccttatccc accattttca gggtgagggg        60
     gcagtgagat ctataataga actcatatgc ggtgctaaag cgctttcgaa aagccaaaga       120
     gggcaaaaaa cctctgtgat tcaaaactcc cgtgaatcct ctctccgtcg gttcgcgctc       180
     gtgagtagtt tcaaacaaca aacagtgcgg catcgataac ccgccgaacg tacttgaaga       240
     caaaaagggt aaagagagtg taaaaagttc ggtccgaaat atcaggtgtt gtgttgtgtt       300
     gccaaagagc gtgagaacca tcaaagcgaa gagcaaaata gaagcgaaac gagaaaaagt       360
     gaaccgtggc attatctctt gagataccca gtgattagta aacactcacc aatctatacg       420
     tgagacagtg aagaacatta tcgtgtagtg gttcccaaac aatttctccg gcgattcgta       480
     aaaacgtgca atatctttgc gactcatcgt tcataaacat actgcaagtg ggtggtggtg       540
     gtgactgaag gccgcaatgg cggccagttc tcggggacca actccttcgt catggggaga       600
     cggcccatca catgcattga atcctagcca aatcgatgga tcgtacacag gggccacatt       660
     acctccttac atggataacg agcaaaacta tggtgctttg cttttgctta gaatctctgg       720
     agtcgaccgc ccattaccaa acgtaccttt tattatacgg aagtctgttc aacaatacgt       780
     tggtgggcgc attgagggtg cattcccaga agcgaatagg gccacctacg cgttgaaggt       840
     gaggagcctc aggcagttca accgtctatt aactatgagt caactgatcg atgggacccc       900
     cgtacatatt accgaacatc caacgcttaa ctctacacga tgcgtagtaa gttgccgcga       960
     tgttatcaat gttactgact ctgaactctt ggaggagctc aaagaacaag ggattaaaga      1020
     agttcgcaga ataacacgca gcgtaggagg agagagggta aacacacctt cgatcatcct      1080
     aactttccgt ggtacgaatc gtcccgacca catcgatttt ggatacattc gatgccggac      1140
     taggccttat taccctagtc cgatgcaatg ttttaactgc tggtgttttg gccacacaaa      1200
     actacgttgt cagagcaaat cggccacgtg tggaaagtgt tctggagatc atcccatccc      1260
     ggaagacaag acctgtccca acgcaatctt ttgtaaacag tgccaaacaa acgatcatgc      1320
     tgtctcgagt cgctcatgtc ctcagtacaa ggtagaaagc actatccagc gtgtaaaagt      1380
     ggaccaaggg ctatcatatc cggcagcccg tagaatggta gaaaaggatc tcggaactaa      1440
     atcctatgct agcactgtag aagcgtcgaa cagagatgac ctaggacttc tcaactcgaa      1500
     aatagattat ctcaccaccc tcgtttcgaa taaggatagt gaaatagccg acctgcgcgc      1560
     agctctggct gaacgaaata ccccatcagc atctgcgaga tctcaaattg atgaattgaa      1620
     aacaatagtg gcaaatcaag cgaaacaaat cgaaactctt accaaccaac tttctgcatt      1680
     tctgagtatg gttatgcccg ccggaccttc ttttacaaca acatcctcga acacacccgt      1740
     tggtattgct gtctttccag ctaggcatgc aacagaaccg accctcccaa catctttcgt      1800
     aaacgatcaa ccagcagtca aaacccagca acaaatagat gatctgccaa taggaattat      1860
     ctccgattcc gattccgcca cgccggacca tagccccaat ttaaaagata ctccccgtcc      1920
     aacaagattc acaaagagcc aatcggtacc caaacatcct cgatcgggaa caccaatccc      1980
     aaactcctcc aaaccatccc ccagtccaaa caaaacacca aataaaagat ccataaatcg      2040
     aatcgaacca gccaacatac aacaacaaaa aagagtaaaa cataaaagcg cctcggaagg      2100
     ctccagtgct atcgctaaac gctagcatta cttgcctatt ctccatcatc tcgttgtcac      2160
     caccacccct agacaaaaca gctagtaaag gtagtcgaaa cacgcctccc aattatcgcc      2220
     gtaagcccga acgaagccat atccacaaca agaacgcgcg tcgtgaaatt gatggaccgg      2280
     aacccttgca atccaagcaa gtgggtccac ctcaacatcc agccacccat cagtgtctgc      2340
     gtctctgcct ggatagccga ggcgccagcg taccggaagc tataccccaa ccggaatcac      2400
     tggaccgacc tcggcgttta ggtagagtgc cagatgaaga gattggtgcc tcggatagcc      2460
     agggcgtcga cagaccggaa gctaaggacc cgccggaacg gtcgaaccga ctccggcatc      2520
     cgcaggacga aaaagtcatc agaagctaca acatgaaaaa cccgacgatg tatcctagta      2580
     gccttggccc cttcagtgcg gacgtctttc ccacaccgga actggaggac tccccttggc      2640
     gctgggaaga aatcggaaga gggacggaca agggatggct atcccatacc cctagaaagg      2700
     acgacgaggg aatagaagca ggaactgaga aagttgaagg tttgaaatcg aaaaaggata      2760
     ctacaagtga aaaccaacgg accaacgaag aagaaaaaga aaagattttc ggtgggcacc      2820
     ctgggctact tagctcaggc ggtaagtccc atcttgtact tctccggcta tcttctctac      2880
     aattaagcgt cgccttctcg tttaacacac gtgccagcag ccgatggata ctctccccaa      2940
     acttttacta aaatggcttc aaataactgt tctaacagat cgcaatccac tattgtaaca      3000
     gattctcatc acagaagcaa accgctggct ctgcagtgga acataaacgg gttttacaat      3060
     aatttggtgg aactcgaaag gctggtgcac gatcacgcac cccttgtgat tgcattacaa      3120
     gaatcccaca gagcaacgcc gacggcgatg aatgcgacct taggaaaaaa gtatctttgg      3180
     acgtccaaat ttggtcgaaa catctaccac tccgtagcca taggagtttc tattgagcta      3240
     ccatatgagt ctgttacggt taactctgat ctaccgttag ttgctgtcag gataacttgg      3300
     ccttttgcag ttacgatagc ttcactatac atcccaaatg gcagaatacc agacctgaaa      3360
     acccgtttaa tggaagcctt tgacacaata cagggaccaa taatcatcct gggagacgga      3420
     aatgggcatc atgaaacatg ggggaacaat tcgaataaca ttagaggacg aattattctc      3480
     gatttcacta cggacatgaa cctctccatc ctcaatgacg gttctccaac cttctggagg      3540
     ggacaacagg agaccgctat tgacatctct ttagcatcgt ctactattgc aaaccgcctg      3600
     atgtggaaaa tcgatacgga tctatcgggc agcgaccatt tcccgatatg gattcatacg      3660
     aataatgtca caccggaaac ctctcgaaga cctcgctggc ggtataatca agctgattgg      3720
     tcagctttcc aattagcgat agccaataag atggagtcga atccaacatc aattgaagaa      3780
     ctttccaaca atatctacga agccgcagtc gaaaccatcc caagaacaag ctctacccca      3840
     ggtcgtcgcg ctctccactg gtggtctgat gaggttaaaa aagccgtcaa aaaacgaaga      3900
     aaaacgttgc gggccgcaaa acgtttgcct ttcgaccatc catacaaaga aagtgccatg      3960
     aaggcctacc gagaagctca ttacgcatgc cgacaattaa ttcgtgaagc caaagaaggg      4020
     tcttggtcta cgtttctgga cggaattaat gattcgcaat catccaccga actttggagc      4080
     cgtgtcaatg ccatacaagg aaaaaggcgc actcgtggca tcgctttgaa aattgacaac      4140
     cgtacttcaa gggaaccatc tatcatcgtt gatgcactgg cggatttttt cgccgatcta      4200
     tcctcgcatc ggaagtaccc acacaacttt cgtgtaaagc accctattcc aaaggtggaa      4260
     ctatacagtt ttgtagtccc tccggataga gggcaggtat ttaatcagcc tttttcaatt      4320
     aacgaactca acttcgctct caataaagca gagggtcaat cagcgggccc agacgaaata      4380
     gggtatccta tgctcaaaaa ccttccgttt gaaggtaaag tagctctgct tgaaaatttc      4440
     aataaactat ggacaactgg tacttttccg cacagctgga aaactagttt cgttgtcccg      4500
     attccaaaac acaccaaatc agcgcaggac gtagagcact accggcccat tgcattaacc      4560
     agttgcctgg ccaaaataat agaacggttg gtaaatcgca gattaattga acatcttgaa      4620
     agcaacagac ttatagatcc tcgacaacat gccttccgag ctggttttgg aactggcaca      4680
     tacttcgcca cattaggaca ggttctcaac gacgccttgc agaaaggaga tcatatcgag      4740
     atggcttcgc tagatctagc gaaggcgtat aatagagcat ggacaccgga aatcctaaac      4800
     caattagtta catggaacgt taccggaaat atgctaaatt tcatcaagaa cttcctttcg      4860
     gaccgtagtt tcagggtcat aattggcaac tgtcaatcca aactggtcaa cgaggaaaca      4920
     ggcgttcctc aaggctcagt aatcgccgtg acgcttttcc ttgtaggcat gaacagcgtt      4980
     ttcaaatttc taccgaaagg ggtgtacatc tatgtgtacg ctgacgacat tttaatcgta      5040
     gtcaccggta aacatccaaa agctttaaga agaaagctcc aaacagcggt gaacgccatt      5100
     gtacgctgga caagcaaggt tggatttgaa ctctcggccg aaaaatgcac cagaacccat      5160
     atctgttcag ggaatcatcc tgtgctccga aaaccaatca tgattgacgg gaaagccatt      5220
     ccgaccaaga aagcggtgaa aattttggga gtgaccttcg atcgacacct gaacttccga      5280
     caacacttcg atctagtgaa agaaaattgt aaaagccggg ttaacctcat aaaaagcata      5340
     gcgaacaaac gaacaagaag cgacagaaag atccaaatgc gggtagccga tgcaataatt      5400
     tgcagccgtt tattctacgg aacggaaatc acatgccacg cattcgaaga cttaattacc      5460
     agactggggc cagtatacaa caacactatt cgcgcaatat cgggtctact accttctact      5520
     cctgccatgt cggcatgtat cgaagctgga gcacttccgt ttaagtacaa agcagccatc      5580
     gccatcagta cgaaagtagt cagcttcctc gaacgaacga aaagcagagc agcaacgacc      5640
     tacatcacca accaagcaaa ccagttactc aactttacag ccaatatttc actccccttg      5700
     gtagccaaac gcaaccggtt tggagcacaa agttggcaag cgaaggaacc tcgtattgac      5760
     tcctacatca agtccaatct taatcgggaa tgcctcccgg aagtagctca agcgcatttc      5820
     agaaaacggg taaggactga ataccctttt actgaaacgc gttacacgga cggatcgaag      5880
     acttccggag ctaatagcag aagggtgggt ttcggaatct actccacctc cctcgaagaa      5940
     gcatatggcc ttactgaata ctgctcagtg ttttcagcgg aggcagcggc gatattccaa      6000
     gctgcatccc aaccatgcga tggtccatta ttaatcgtga cggactcagc aagtgcatta      6060
     tcagcactcc aaacaaccac taacacccac ccctggatcc aagccacaca agagctaatc      6120
     tcagaaagta ggcgcataac ctttatgtgg attccaggtc ataagggcat aaccggaaac      6180
     gaagaggctg accgcttggc caaccttgga cgaaatgaac gaccattgat acgaactacg      6240
     ccggctgcag atataaaact gtggcttaaa gggaagataa aggatgcatg ggattctgaa      6300
     tgggcacaag aaaaagaatg ctttacacga aaaataaaaa acactaccga tagatggcat      6360
     gatctgccca acagatggga ccaacgagtc ctctcgagga tcagaactgg tcacacccga      6420
     atctcttaca attttggagg ttcgactggt ttccggaagc aatgcgagat ctgcagggtc      6480
     cacaattcag tagagcattt tatctgctgt tgcccctcca tggaacatct aaggttgaaa      6540
     ttcggaatat acagcatcag atcagcgcta caaaatgagc gtaatagtga atccagcctt      6600
     ataacttttc tcaagaacgc ggggatgtat aaggcgatct aaaaggaatg gcgtacgaat      6660
     acttgataag aaggcaatta atcaaaggtt tcacgccata aacatcatac gtaaagctca      6720
     ataacgtaca aaatatgtat taaatagaac aaaatagtgg tgaactcgcc tggggcgaaa      6780
     aaccacttta ataaagaaaa aaaaaaaaaa aaaaagaaaa                            6820
//
ID   I-74_AAe    repbase;    DNA;    INV; 8380 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-74_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8380
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1345-1345 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           393..2072
FT                 /product="I-74_AAe_1p"
FT                 /translation="ASMELAYGFPPLPGDPGGPIGGSGGISNRVNGEYTGP
FT                 RYPGFMDRDGTAGPLQFLKMQAVSGSIPQDPFLLRLSVEKHLGGPIEGAYK
FT                 ENRGISYVLKVRSQTQFNRLLKMKTLCDGTAIEIKEHDQLNQRKCVVSNYD
FT                 SVGLTDDYLKVQLAAQGVKEIHRIKRKNADGVWQNTPTIILTIAGTVIPPH
FT                 IDFGWSRCKTRNYYPSPMLCFHCWEYGHTGKRCPQQFRICGRCSQTHPEDR
FT                 TINSSPGISTEAGNIPGVNTSATTNSVRPLCTEDPYCKHCKSSDHQVSSRK
FT                 CPAYLREIDIQHIRVDEGTSYPQARKVYEARLASGSSKTAYSGVINASKDA
FT                 ENAELRSVIKQLQEDAKLKDKRMEEMERRLRNTSVNDRIETTKKHGTIDDL
FT                 IRQVAELSSTVNRLERALTKKDEIIEAQNKEIAKLRAADSDSNPSAFSIPE
FT                 SEVSEEHINHKDLRLNPISKQIDEWFIGNSKNTGNDKETLKKGKSSATGKL
FT                 DTMNESGHETDSSMKSADSRQSTTTINKRTHASGNSSGESSTGSPKTKRAT
FT                 NTRKGKGGAKKKN"
FT   CDS           2127..7910
FT                 /product="I-74_AAe_2p"
FT                 /note="endonuclease, 2 reverse transcriptases, and
FT                 ribonuclease H."
FT                 /translation="VQIFYIVFTPQSSVEIVKRKESTEQTQTASLELPSFQ
FT                 TEDSTSGARDSRGPTSADATPQPELADNPRHPGATVVAGTHKGHCACTPEF
FT                 PTYYPDSQGPAGAEVLAVPEPTDNLWHPESVGRGTQKGLMSYSPEDNVDIN
FT                 IGVKPAPRRNPFRSCRKPNVYSPLTEAEATNAVCYDILHRTRYGQSVLITP
FT                 GTSTECRYRTSIQQQRSSLPKRNMQKHHGQPNPAGKYNKTSTFTTHDRFAA
FT                 RETAANSTPGHPGNPNPGGKSHPDPQLLSHSQSISAISHGDECHSQLVDGR
FT                 QQPVRENTLSFSTHSQQRETASTFAIQWNINGYFHNLPDLEMLVHSMQPVV
FT                 IALQEIHRATPSIMNNTLGKKYQWFSKSGSNIYHSVGIGVSADLAVHQINV
FT                 DTDFPIVAVRLQWPFPISVVSIYLPNGKLHNLESQFNEVLNQIPEPMIILG
FT                 DVNSYHRAWGSSSNNVRGSIIANIASHRNLTILNDGSPTFFRGHSESAIDI
FT                 SLVSASITNRFLWSVDTDFRGSDHAPIYIVLENTICPETTRRPRWLFDRAD
FT                 WSGFQTELANELDALSPASISDLTNLIYRAASNNIPRTSPTPGRRALHWWN
FT                 QDTRNAVKARRKSLRNIKRLRKKLPEGHPDRALALETYQAARNTCRQVIRD
FT                 AKGESWTKFLDGINENQSSSELWRRVNSILGKRRHKGVAIEIDGTTTRDPH
FT                 RISNALANYFYGISSFQRYPNTFLKRHPSPETAIQQFQVPADRGQVFNSPF
FT                 TMNELKYALKKANGKSVGPDDIGYPMLNNLPPSGKTTLLAMINKEWISGTL
FT                 PADWKHSYIVPVPKNSGPSNIVSSYRPIALTSCTAKIMERMVNRRLMEFLE
FT                 EHHELDNRQHAFRPGFGTGTYMASLGXILNDALKEGHHIEIXSLDLAKAYN
FT                 RAWTPGVLKKLASWGITGSLLTFVKNFLDGRSAQVLVGNCKSNSFDEETGV
FT                 PQGSVIAVTLFLVAMSGVFLVIPKGVFILVYADDILLIVTGMHPRSVRRKL
FT                 QTAVTAVAKWAQEAGFEISAEKCARLHVCNIKHAPPKIPNTCRQVIRDAKG
FT                 ESWTKFLDGINENQSSSELWRRVNSILGKRRHKGVAIEIDGTTTRDPHRIS
FT                 NALANYFYGISSFQRYPNTFLKRHPSPETAIQQFQVPADRGQVFNSPFTMN
FT                 ELKYALKKANGKSVGPDDIGYPMLNNLPPSGKTTLLAMINKEWISGTLPAD
FT                 WKHSYIVPIPKNSGPSNIVSSYRPIALTSCTAKIMERMVNRRLMEFLEEHH
FT                 KLDNRQHAFRPGFGTGTYMASLGQILNDALKEGHHIEIASLDLAKAYNRAW
FT                 TPGVLKKLASWGITGSLLTFVKNFLDGRSAQVLVGNCKSNSFDEETGVPQG
FT                 SVIAVTLFLVAMSGVFLVIPKGVFILVYADDILLIVTGMHPRSVRRKLQTA
FT                 VTAVAKWAQEAGFEISAEKCARLHVCNIKHAPPKIPIKINKCPIPTKKSIR
FT                 ILGVNIDRHLTFQDHFAKVKEACKNRVCMIRNITNRRTRSCRATRRRVADA
FT                 VINSRLFYGIEITCREMENLVSTLSPIYNNTVRALSGLLPSTPASSACVEA
FT                 GMLSFRHRATMTLCHRAINYLEKTRSGGQVCFLTEQANRALNDVASSTLPP
FT                 VARVHRVGPRSWKARGPEIDMAMKSLFRKGGNPMQAKLLFIERIRSRYSNA
FT                 DIRYSDGSKAKGTVGVGVFSPVWKAQYSLPGQCSVFSAEAAALFKAIAKPS
FT                 DKPILVATDSASVLSALESPTAKHPWIQAIQNTINDRNRRITLTWVPGHTG
FT                 IHGNEQADILANLGRSSRRLYQKVPAADAKIWIKHVIENAWAEEWRANQFL
FT                 FLRKIKASTEAWEDRTNWKEQVVLSRLRTGHTRASHDFSSNSSFRRTCETC
FT                 GTRNTVEHILYECPTLEHLRTLYQMGSIRNVLQNDQASETKLICFLKDAGL
FT                 FALI"
XX
SQ   Sequence 8380 BP; 2493 A; 2123 C; 1866 G; 1893 T; 5 other;
     cagtcgacag ctaactgtgt tcgcgaacgg tcgtgataca tttacactcg tccgctatca        60
     ccgggtagtt ttcgcgcgtt agtgtttttc gacgcattcg aatcgtctaa gaaggcagat       120
     tgaaaaagat ttgaaagtaa atcgataktg gccagtgaaa acctgcagtt ctgcatattg       180
     ccctgaaagt gcttgatttc cgaacctgac gcttttcagg ctccgtacag ggcccctttt       240
     tgaagtgagg ttagtgaacc acgtgtttta gctgcgaggt cgaaaagctg ctaccgcttc       300
     gacgtaagag aagccgagat tgagagaagc tgagagagaa acccgtgagt aatttgagag       360
     tacatataag gtaatcccct acccgccgct gagccagcat ggagctggct tacggcttcc       420
     cgcctcttcc aggggaccct gggggcccca taggaggaag cggaggtata tcgaaccgtg       480
     tgaatggtga atacactgga ccacgctacc ctggtttcat ggatcgcgac ggcactgctg       540
     gaccactgca gttcttgaaa atgcaagcag tttctggttc aattccwcaa gacccgtttc       600
     tattacgact ctccgttgag aaacatcttg gaggaccaat cgaaggagca tacaaggaga       660
     atcggggcat ctcgtatgta ctcaaagtgc gaagtcagac acagtttaac cggctgctaa       720
     agatgaaaac tttgtgtgat ggcacggcaa tcgagataaa agagcacgat cagttgaacc       780
     agcgaaagtg cgtcgtctcg aactacgact ccgttggtct aaccgatgac tacctcaagg       840
     tccaactggc tgcccaaggc gtcaaggaaa tccaccgaat caaaagaaaa aatgcagatg       900
     gtgtatggca aaatactccc acgatcattc ttacgatcgc tggtacggta attccgcccc       960
     atattgattt tggatggagc cgatgcaaaa cgaggaatta ctacccgtct ccaatgctat      1020
     gtttccactg ctgggaatat ggacacacgg gaaagcggtg ccctcagcaa ttcagaattt      1080
     gtggacgttg cagtcaaacc cacccggaag atcgaacaat taattcctct ccaggcatct      1140
     ccacggaagc tggcaacatc cccggtgtaa atacctcggc tacgacaaat agcgtgcgac      1200
     ctttatgcac agaggatcct tattgcaaac actgcaaaag tagcgatcat caggtttcta      1260
     gccgaaagtg tccggcatat cttcgggaaa tcgatattca acacatccgc gtggacgaag      1320
     gcacgtccta cccacaggct cgcaaggtct acgaagctcg tttggcatct ggcagcagca      1380
     aaaccgcata tagtggcgta attaacgcca gcaaagatgc ggagaatgct gagttgagat      1440
     ctgttatcaa acaattacag gaggatgcaa aactgaagga caagcgaatg gaggaaatgg      1500
     aacgcaggct gaggaacaca agcgtcaacg accgaataga aacaacaaaa aaacatggga      1560
     ctattgatga tcttattcgg caagttgctg aactctcttc tacagtcaac cgccttgaac      1620
     gagccctgac gaaaaaggac gaaatcatag aagcacaaaa caaggaaatt gcgaaactgc      1680
     gtgctgctga ctctgactcc aatccctccg cgttttcgat ccctgaatca gaagtgtccg      1740
     aggaacatat caaccataag gatctgcgtc taaatccaat ttccaagcaa atcgatgagt      1800
     ggttcatcgg taactccaag aataccggta acgataaaga aaccctgaag aaaggaaagt      1860
     catcagcgac tggaaaactt gacaccatga atgaatcagg tcacgaaacg gattcaagta      1920
     tgaaatccgc cgactccaga cagagtacca ctaccatcaa caaacgaacc catgcaagtg      1980
     gaaactctag cggcgaatct tcaactggct ctccaaagac aaagcgggca accaataccc      2040
     gcaaagggaa gggtggagcc aagaaaaaga actaagttct ccctacatat tgctcagtcc      2100
     tccacaatac ggccaatacc acgtgagtcc aaattttcta catcgtcttc actccgcaat      2160
     ccagtgttga gatagtaaaa agaaaggagt cgactgagca aactcaaacc gcatcattag      2220
     aactaccaag ctttcaaaca gaagactcga catcaggggc cagagacagt cggggcccca      2280
     ccagtgcgga cgctacaccc caaccggaac tggcggacaa ccctcgacat cctggcgcaa      2340
     ctgttgtcgc cgggacgcat aagggacact gcgcctgtac cccggaattc ccaacatact      2400
     atccggacag ccagggcccc gccggtgcgg aagttttggc tgtaccggaa ccgacggaca      2460
     acctctggca tccggaaagt gttggaagag ggacgcaaaa gggacttatg tcctattccc      2520
     ctgaggataa cgtggacatc aacatcggag tcaaaccagc ccctagaagg aatccattta      2580
     gaagctgtcg caaaccaaat gtgtatagcc ctctcacgga agcggaagca accaacgcgg      2640
     tctgctatga catccttcac agaacgcgct acggccaatc cgtcttgata acacctggta      2700
     catcaaccga gtgccgatac cgtaccagta ttcaacagca aagatcttca cttccgaaac      2760
     gaaacatgca gaagcatcac gggcaaccga acccagccgg taagtacaac aaaacttcca      2820
     cttttacaac tcatgatcga tttgccgcga gagaaactgc agctaattct actcctgggc      2880
     accccgggaa cccaaacccg ggcggtaagt cccatccgga ccctcaactg ctttcacata      2940
     gtcagtcaat ttctgccatt tctcatggcg atgaatgcca ctcgcaattg gtggatggca      3000
     ggcaacagcc agtcagagaa aataccctat ccttttcgac tcactcacaa caacgagaaa      3060
     ctgcctccac tttcgctata cagtggaata tcaatggata tttccacaat cttcctgatc      3120
     tagagatgct tgttcattcc atgcaacccg tggtaatagc actacaggaa attcatcgtg      3180
     caacacccag catcatgaac aacactctag gtaagaaata ccaatggttc tccaaaagtg      3240
     gctcaaacat atatcattca gttggtatcg gtgtctcagc cgacttagcc gttcaccaaa      3300
     tcaatgtaga taccgatttt cccatagtcg cmgtccgact gcaatggcct tttccgatct      3360
     cggtggtttc gatttactta ccgaatggaa agttacataa cctggagagt caatttaatg      3420
     aggtacttaa tcaaattcct gagccgatga taattctcgg tgacgtcaac agctaccatc      3480
     gagcatgggg aagtagcagc aataacgtgc gaggttctat tattgccaac attgccagcc      3540
     atagaaacct caccatactc aatgatggat cacctacgtt tttccgtggc cattctgaat      3600
     ccgcaattga catctctctt gtatcggctt ccatcacaaa tcggttttta tggtccgttg      3660
     ataccgactt tcgtggaagt gatcacgctc caatctatat agtgttagaa aatactattt      3720
     gtccagagac aacgcggcgg cctcggtggt tattcgatag agccgactgg tctgggtttc      3780
     agacagaact tgctaacgaa ctggacgcac tatccccagc ttcaatctcg gacctcacca      3840
     acctgatcta tagagcagca tccaacaata tcccgcgcac cagtcccact ccgggacgtc      3900
     gtgcactcca ctggtggaac caggacactc gaaacgcagt gaaagctaga cgaaaatccc      3960
     ttcggaatat taagcgattg aggaaaaaac taccagaagg tcatcctgac agggccctcg      4020
     ctctggaaac ttaccaagcc gcccgcaata catgtagaca ggtgattcgt gatgctaaag      4080
     gagaatcttg gacaaaattc ctcgatggca taaacgaaaa tcaatcatca tctgagcttt      4140
     ggcgccgagt caatagcatc ttgggaaaaa gacgccacaa aggagtggct attgagatcg      4200
     atggcacaac tacaagggac ccacatcgta tctcaaacgc tctagcgaac tatttctatg      4260
     gcatttcttc atttcagcga tatcccaata cttttctcaa gcgacaccca tcccctgaaa      4320
     cggcgataca acagttccag gttccagctg acagagggca agtttttaac tcaccattta      4380
     caatgaacga gttgaaatac gctctaaaaa aggccaatgg taaatcggtt ggtccagacg      4440
     acattggtta cccgatgctc aataatcttc ctccgagcgg aaagaccact ctcctcgcta      4500
     tgatcaacaa agaatggatc tctggtaccc tccccgctga ttggaaacac agctacatag      4560
     tacccgttcc gaaaaactct ggcccctcca atatcgtaag cagctatcga ccgatagcat      4620
     tgacaagttg cacagcaaaa ataatggaga gaatggtcaa tagaaggctc atggaatttc      4680
     ttgaggagca tcacgaatta gataaccggc aacacgcttt ccgtcccgga tttggaaccg      4740
     gaacatacat ggcctctctc ggtcakattc tcaacgacgc actcaaggaa ggacatcaca      4800
     ttgaaatagm atcgctggac ttggcaaaag cctataatag ggcatggaca cccggcgtgc      4860
     tgaaaaaatt ggctagctgg ggcatcaccg gcagtctgct cacgttcgta aaaaacttcc      4920
     tcgacgggcg aagcgcacag gtgcttgttg gaaactgcaa atccaattca tttgatgaag      4980
     aaactggcgt cccacaagga tcagtgattg cggtcacgct atttcttgtg gccatgagcg      5040
     gtgttttctt ggttattccc aagggagtct ttattctagt gtatgcggat gacatattgc      5100
     taatcgtcac tggcatgcac ccgaggagcg ttagacgaaa actgcaaaca gccgttactg      5160
     ctgtcgccaa atgggcacaa gaagccggct tcgaaatttc agcagagaaa tgtgctagac      5220
     tccatgtatg taatattaaa catgctccac caaagattcc caatacatgt agacaggtga      5280
     ttcgtgatgc taaaggagaa tcttggacaa aattcctcga tggcataaac gaaaatcaat      5340
     catcatctga gctttggcgc cgagtcaata gcatcttggg aaaaagacgc cacaaaggag      5400
     tggctattga gatcgatggc acaactacaa gggacccaca tcgtatctca aacgctctag      5460
     cgaactattt ctatggcatt tcttcatttc agcgatatcc caatactttt ctcaagcgac      5520
     acccatcccc tgaaacggcg atacaacagt tccaggttcc agctgacaga gggcaagttt      5580
     ttaactcacc atttacaatg aacgagttga aatacgctct aaaaaaggcc aatggtaaat      5640
     cggttggtcc agacgacatt ggttacccga tgctcaataa tcttcctccg agcggaaaga      5700
     ccactctcct cgctatgatc aacaaagaat ggatctctgg taccctcccc gctgattgga      5760
     aacacagcta catagtaccc attccgaaaa actctggccc ctccaatatc gtaagcagct      5820
     atcgaccgat agcattgaca agttgcacag caaaaataat ggagagaatg gtcaatagaa      5880
     ggctcatgga atttcttgag gagcatcata aattagataa ccggcaacac gctttccgtc      5940
     ccggatttgg aaccggaaca tacatggcct ctctcggtca gattctcaac gacgcactca      6000
     aggaaggaca tcacattgaa atagcatcgc tggacttggc aaaagcctat aatagggcat      6060
     ggacacccgg cgtgctgaaa aaattggcta gctggggcat caccggcagt ctgctcacgt      6120
     tcgtaaaaaa cttcctcgac gggcgaagcg cacaggtgct tgttggaaac tgcaaatcca      6180
     attcatttga tgaagaaact ggcgtcccac aaggatcagt gattgcggtc acgctatttc      6240
     ttgtggccat gagcggtgtt ttcttggtta ttcccaaggg agtctttatt ctagtgtatg      6300
     cggatgacat attgctaatc gtcactggca tgcacccgag gagcgttaga cgaaaactgc      6360
     aaacagccgt tactgctgtc gccaaatggg cacaagaagc cggcttcgaa atttcagcag      6420
     agaaatgtgc tagactccat gtatgtaata ttaaacatgc tccaccaaag attcccatca      6480
     agataaataa atgtccaata cctactaaga agagcattag aattcttggc gttaacatcg      6540
     atcgacactt aacttttcaa gaccattttg ccaaggtcaa ggaggcttgt aagaacaggg      6600
     tgtgtatgat ccgcaacatt acaaaccggc gtactcgaag ctgtagggca actcgtcgcc      6660
     gagtcgcaga tgccgtaatt aacagtagac tgttttatgg gattgaaatc acctgtcggg      6720
     aaatggaaaa tctggtctct acactgtccc cgatctataa taatactgtc agagcactgt      6780
     cgggccttct cccctctaca cctgcttcct ctgcctgtgt agaagccggc atgctctcgt      6840
     ttcgtcacag ggctacaatg actttatgcc accgagcaat caactacctc gaaaaaacta      6900
     ggagtggtgg gcaagtttgc tttctcactg agcaggcgaa ccgcgcccta aacgatgtgg      6960
     ccagttccac gctccccccg gtggcgagag ttcaccgtgt tgggcctcga agctggaagg      7020
     ccagaggacc cgaaatcgac atggccatga agtctctatt tcgtaagggt ggaaacccga      7080
     tgcaggccaa gctgctgttc atcgaaagaa ttagaagccg ttactctaac gcggatatcc      7140
     gatactccga tggctctaag gcaaaaggta ccgtaggagt aggcgtattc agtcctgtct      7200
     ggaaagctca atacagtttg cctggccaat gctccgtatt ttccgctgag gcagcagcac      7260
     tgttcaaagc aattgcgaaa ccaagtgata agcccatttt agttgctacg gattcagcca      7320
     gtgtcctgtc agctctggaa tcaccaacgg caaagcaccc ctggattcaa gcgatacaga      7380
     acaccataaa cgacagaaat agaagaatca ctttgacttg ggtcccgggc cacactggaa      7440
     tacacggtaa cgaacaggca gacatactgg ccaaccttgg tcggtcaagt cgccgtctat      7500
     atcagaaagt acctgcagcg gatgccaaaa tatggatcaa acatgttatt gagaatgcct      7560
     gggcagaaga atggcgtgcc aaccaattcc tgtttctccg aaaaattaaa gcaagtacgg      7620
     aagcctggga agacagaacc aactggaagg agcaggtcgt gctttcacga cttcgtacag      7680
     gacatacgag ggcctcacac gacttctcca gtaattcatc gtttcgcaga acctgtgaga      7740
     catgcggaac tcgtaataca gtggagcaca ttctatatga gtgccccact ctcgagcatc      7800
     ttagaaccct ctatcagatg ggaagcatca ggaatgtgct ccaaaatgac caggcaagtg      7860
     aaaccaaact tatttgtttt ctaaaggatg caggcttatt tgcactaatt tgagtctcct      7920
     taaactattt cccaaacagc aatcaaacta cccaaccccg ccgagtgcag tcccccgctg      7980
     ggacatgcat ttcgtgaggg caatgacgaa aatagcaatc agacaacggt caccggcccc      8040
     aggcatgaaa atggatcatc aaacggaaaa ctactataac ccaacattct caaaccgtat      8100
     caccgaccca agcagaaaac aggctatcga gctggttatg acttaaagtt ctatgcaaac      8160
     tccattacac ccctaaccca aacctattct cctaaatctt ctacctcaat atcctttcac      8220
     ccaatatgaa tgccagcatt gttataattt tttgtaatac taaactctgt aacagactag      8280
     agaataccct taaggtacct ctagcgtgca atattcgtca accgagatga accagcctca      8340
     ggctgaaagt ctcgttaata aagataataa taataataat                            8380
//
ID   I-75_AAe    repbase;    DNA;    INV; 6306 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-75_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6306
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1346-1346 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           513..1859
FT                 /product="I-75_AAe_1p"
FT                 /translation="MATGGSYGGTRPPGRTVPEFLDPQDRFGALTVLLLQK
FT                 AGNNDLPNPFIVGLSIERAAGQIENTKSVNDGEKYILRVRNPTQVKSLLAM
FT                 KTLTDGTIVSVVYHPTLNTCKCVISCPELLKMTEDDILTELTAQKVTEVRR
FT                 IYRNVNQEKIKTPTLILTLCSTTFPEAIKVGPLYVRTRPYYPGPMLCYHCF
FT                 KYGHTKSRCPGPARCKTCSDTDPKDDCKKDAYCINCQGGHQPSARKCPVYQ
FT                 KEVEIIKTKIDHNLSYPEARRRVNEGSGSYAKITAQGRMMESDLVNELKKV
FT                 IAAKDAQIQALTQQMEKMKDFIKTKLVMNQTSLSQHDTLLSPCETVENINH
FT                 QDETNNSPNEITPGTGLALSRYISVNNGMTTPPKGARKPTDNSRATQKRIN
FT                 VSPLSSPKATPAKQVVLEVEPLRNDDDALWMIECLDDTVAVNQNAVADSFD
FT                 RQKH"
FT   CDS           1870..6171
FT                 /product="I-75_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANTSPSSNSPTYNRSIINSSSSSSKRFEGGECNVPP
FT                 SLPGREALSVRKIVRDAIPQPVDLQPTTVTVCPQQSSHEINNHTANNRPYH
FT                 HQAYNVMGTYCSIQTTRSNTLSAEEYDAIYCINQQPSTSRAPDKHVARKSY
FT                 GSSRARPPMSTLTRDVPDFSDEPRAAVDMGCLTSQASRTSKISEYENDLQE
FT                 NIFQNIFENAQQNQSSSEHRSASVSSCSSSTSTNQNDSKKIIALQWNISSL
FT                 PKNLNDLIVLTNKLQPIVLALQETHVKQTRCIDSWLGGTYKWYLKSRPISH
FT                 HSIALAVNSTTPHRVVPLKSDLLALAIQLYQNSKLTIVSIYVPPRNCENFE
FT                 NKLQDLLNELEPPFLLLGDFNAHNMAWGSPQNDKRGNIIAQMAEDKDLIIL
FT                 NDGSNTFSRGVAESAIDLSICSSGVARNISWRRADDTSGSDHYPIFILGND
FT                 ALPETTRRKKWLFDSADWESYESNLLALFDQDPQYSIQQIAELMRKAGKSS
FT                 IPMSSSKVGLKATYWWNPQVEEAVKLRRKALRKMKRINSQHPDKELYIGRF
FT                 REARRTCRKIMAESKRKAWESFLDGINASSSPVELWRRINSLSGKRRIKGF
FT                 SLMIGDTFSDNPREISEKLAQYFAEMSATNAYSERFLMERERNRPFPFCPG
FT                 VVNHDLLEACNYRFSLDELVFALDTCKSKSCGPDGIGYPMIKKLPNIIKCQ
FT                 LLDGYNKIWQTGEFPDDWHSSIVVPIPKAGPKSCQLRDFRPISLTSCMAKL
FT                 MERMVNRRLMESLEKSKLLDQRQFAFRRGKGAGAYFASMGEVLAHTKANNL
FT                 HADIACLDISKAYNRVWRKGVLEQLGRWGYAGNVLNFINGFLANRTFRVAI
FT                 GGSLSSTFTEENGVPQGSVLAVSLFLIVMNSVFQHLPSGVHVFVYADDIVI
FT                 VVAGPNATRVRRKIQSAIKMVFEWASRVGFQMSTEKCEITHCCAFRHNPML
FT                 RPVKVNDNAIPFRKAPKVIGVSLDRNLNFCQHFQRIKQEVKSRVQLVKTIS
FT                 SRHTCSNRHVLQRVANALICSKLLYGIEITYSGFENLIQILGPVYNSSIRM
FT                 TSGLLPSSPTLSSCVEAGHLPFDLTIATAIATRAVRLAEKAGLNKFKELLT
FT                 SAQNLFHRLTNATFPPVSQLCRVGDRRWDVPAPPIDWTIKKAIRAGEAPAK
FT                 AKAVFQSTIHEKYQGYHQIYTDGSRRDNKVGIGIYSSTEEINYRLPDQMSV
FT                 FSAEAVALNLAAKMACRLSGKSVIFTDSASVLTALENPRSKHPCVQSLEEF
FT                 NSGNIVFCWVPGHSGISGNVKADMLAGRGCTARRLRIKTPGDDIKHYIKSS
FT                 IDDTFAARWNVERNAFLRKIKSSTKKWNDQSNRKHQINLSRLRVGHCRFSH
FT                 PHVCGGSREDRCECGARTNTVEHVLVNCPVYDDLRKRYHLELSIGQILDND
FT                 PVVEENLLLFLKESGLFKKI"
XX
SQ   Sequence 6306 BP; 2008 A; 1382 C; 1331 G; 1584 T; 1 other;
     cagttttgtc gggatactgt catctgtgat atcgatagtt tgtatgctca tcgaatttta        60
     tcgtaaaatc tgagctaaga attattctaa aaacatagat agtatctaaa tacgaaaatc       120
     gcgtatcggg acactgatat ttgatggagg tgtagtgaga aatactcaat ttgcgtattg       180
     tcgaacaatt ttatgattca gttcagaatc aagaaagcat cggtactgtg atagtattct       240
     attgttgtcg tcgtcgtagc acgtgctgtt attgtgtacc tatatcagtg agtgcccgag       300
     caacwgatag catcacacag tgaacaatcg tcgtttattt cccattaaac ctcataccta       360
     ggggtagata gtcggtgacg gctatcacac tggctggtgt tttaggggtt taagagacag       420
     cttggtggag tggtaaaatt ataatcagtc tatactgcat ggtaggaaac tacattgctc       480
     ttctgctgat cgactaactg aaatcgtggc ccatggccac aggtggcagt tatgggggca       540
     caaggcctcc tggaagaact gttcctgagt ttctggaccc acaagaccga tttggagcac       600
     taactgtcct attactgcaa aaagcaggaa acaacgatct gcctaatccc tttattgtgg       660
     gtctgtcaat tgaacgagct gctgggcaaa ttgaaaatac caaatcggtg aacgatggcg       720
     aaaagtacat cctcagagta agaaacccta cacaggtgaa aagtctgcta gcgatgaaaa       780
     ctttaactga cggtacgata gtctcggttg tttaccaccc tacgcttaat acatgcaaat       840
     gcgtcatatc atgcccagaa ttgctgaaaa tgactgagga tgacattttg acggaattaa       900
     cagcacagaa agtaacggaa gttcggagaa tctaccgaaa tgtgaaccaa gagaagatta       960
     aaacgcccac attaattctc acactgtgta gcactacgtt tcctgaggct attaaggtcg      1020
     gccctctgta cgtccggacc cgtccttatt atcccggacc catgctttgc taccattgtt      1080
     ttaagtatgg tcacacaaaa tcgcgatgtc ctggtccagc acggtgtaag acttgctcag      1140
     acacagatcc caaggatgat tgtaagaagg atgcatattg cattaactgc caaggaggtc      1200
     atcaaccgag tgccagaaaa tgtcctgtct atcaaaaaga ggttgaaatc atcaagacta      1260
     agatcgacca caacctctcc tatccggaag ccagaagaag agtaaatgaa ggttcgggca      1320
     gttacgccaa aataactgcg cagggtcgaa tgatggagtc agatctcgtc aatgaactga      1380
     aaaaagttat tgctgcgaaa gatgctcaaa ttcaggcatt aactcagcaa atggaaaaaa      1440
     tgaaagattt catcaaaact aaactggtta tgaatcaaac atctctttca caacacgata      1500
     ctcttttgtc tccatgcgaa actgtggaaa acatcaacca tcaagatgaa actaacaatt      1560
     cgccgaacga aataacgcct ggcaccggtt tggccctcag ccggtatata tcggtcaaca      1620
     acggaatgac tacaccaccg aaaggagccc gaaaacccac tgacaactca cgagcaactc      1680
     aaaaaagaat taatgtctcc ccgctgtcct ctcctaaggc cacaccagcc aaacaagtgg      1740
     tattagaggt agagccctta agaaatgacg acgacgcttt atggatgatt gaatgtctcg      1800
     atgatactgt tgctgtcaat cagaacgctg tagccgacag ttttgatcgc cagaaacact      1860
     aattcgatca tggccaatac atccccatca tcaaatagcc caacttacaa tagatcaatc      1920
     atcaatagca gttcttcatc atccaagcgg tttgagggag gggaatgtaa cgtacccccc      1980
     tcacttccag gaagagaagc actgtcggtt aggaagatag tccgggacgc aataccccaa      2040
     cccgtcgacc ttcaacctac cacagtgacc gtctgtcccc agcaatcatc gcatgaaatc      2100
     aataaccaca ctgcaaacaa tcgaccatat catcatcaag catataatgt catgggaacg      2160
     tactgttcaa ttcaaactac ccgatcgaac accttatccg ctgaagagta cgacgcaatc      2220
     tactgtataa atcaacagcc atccaccagt agagcaccag ataagcacgt cgcccgtaaa      2280
     tcgtatggct ctagtagagc aaggcccccc atgtcaaccc tgacccgaga tgttccagat      2340
     ttttctgatg agcctcgggc ggcagttgac atgggttgcc taacatctca ggcaagtaga      2400
     actagtaaaa tatcggaata cgaaaacgat ctccaagaaa atattttcca gaacatcttc      2460
     gaaaacgctc agcaaaacca gtcatcgagt gagcacagat cagcctctgt gagttcctgt      2520
     tcatcctcga catcaacaaa ccaaaatgac tccaagaaga taatcgctct gcagtggaat      2580
     ataagcagcc tccctaagaa tcttaatgat ctgattgtcc taacaaacaa actgcaaccg      2640
     atcgttcttg cgcttcaaga aacccatgtt aagcagacac gctgcattga ttcttggtta      2700
     ggaggaacct acaaatggta tcttaagagt agaccgattt cacatcattc catcgcactg      2760
     gctgtgaatt ctacaacacc tcatcgtgta gtccctttga aaagtgattt gctagcactc      2820
     gcgattcaat tgtaccagaa cagcaaactt acaattgtgt caatctacgt tcctccgaga      2880
     aattgtgaaa actttgaaaa caaacttcag gatctattga acgagctcga acctccattt      2940
     ctcttactag gcgacttcaa tgcccacaac atggcctggg gatcaccaca aaatgacaag      3000
     agaggaaata tcatcgcaca aatggcagaa gacaaggacc ttattatact caatgacggc      3060
     agcaacacat tttcacgtgg tgtagctgaa tctgctatag atttgtcgat atgttctagc      3120
     ggagtagcta ggaatattag ttggcgtagg gctgacgaca cgtccggcag tgatcactat      3180
     ccaatattta tcctgggaaa cgacgcactt cctgaaacca ctcgccgcaa aaaatggctg      3240
     tttgattcgg ccgactggga gagctacgaa agtaatctac tagcactctt cgaccaagac      3300
     ccacagtatt cgatacaaca aatcgcagaa cttatgagaa aagcagggaa atcaagtata      3360
     cctatgtcat cgtctaaagt gggactcaaa gcaacctact ggtggaaccc acaagtagag      3420
     gaagccgtca aattgcggag gaaagcactt cgaaaaatga aaagaatcaa ctctcaacat      3480
     cccgataaag agctgtacat aggaagattc cgtgaagctc gtcgcacctg tcgaaaaata      3540
     atggcggaat ctaaaaggaa ggcctgggaa agcttcctag acggaataaa tgcatccagc      3600
     tctccagttg aactctggcg tcggattaac tctttgagcg gaaagaggag aataaaagga      3660
     ttctctttaa tgattggtga cactttttca gataatccaa gagaaattag cgaaaaactg      3720
     gcccaatatt ttgccgaaat gtctgctacc aacgcatatt ccgaaagatt tttgatggaa      3780
     cgtgagcgaa ataggccctt cccgttctgt cctggcgtag ttaaccatga tcttcttgaa      3840
     gcttgcaatt accgtttctc cttggatgaa ctcgtttttg ctctcgacac gtgtaaaagc      3900
     aaatcatgtg gacccgatgg aataggttat ccaatgataa aaaaattacc gaatatcatt      3960
     aaatgccaat tattagatgg ttataacaaa atctggcaaa ctggcgaatt tccagatgat      4020
     tggcattcca gcatagttgt gcctattcca aaagccgggc caaaaagttg ccagcttcga      4080
     gatttccgac ctattagttt gacgagttgt atggcaaaac ttatggaaag gatggtaaat      4140
     agaagactta tggaatccct agaaaaatca aagctgcttg atcaacgtca gtttgctttc      4200
     cgtagaggaa agggtgcagg tgcttatttt gcatcaatgg gggaggttct cgcccacaca      4260
     aaagccaaca atctgcatgc tgacatcgcg tgcctggaca tctctaaagc atataatcgc      4320
     gtatggagaa aaggagtgct tgagcaattg ggaagatggg gatatgctgg aaatgtcctt      4380
     aatttcatca atggattcct ggctaatcga acctttcgag tggccatcgg aggatcactc      4440
     tcttcaacct tcactgagga aaatggcgtc ccccaagggt cagtgcttgc cgtctccctg      4500
     tttttgatcg taatgaactc cgtgttccag catttaccat ctggtgttca tgtatttgta      4560
     tacgccgatg atattgtcat cgttgtcgct ggaccgaatg ctactagagt aagaaggaaa      4620
     attcaaagtg ccatcaaaat ggtatttgaa tgggcatcta gagtaggctt ccagatgtct      4680
     acagagaaat gtgaaataac tcattgttgt gcttttcgtc acaatccaat gctgaggcca      4740
     gtgaaggtga atgataatgc aattccattt cgtaaagcac ccaaagttat tggagtgtca      4800
     ctagatcgca atctaaattt ctgccagcac ttccaaagaa taaaacaaga agtgaagagt      4860
     cgagttcagc tggtaaaaac gattagcagc agacacacct gtagtaaccg tcatgtacta      4920
     caacgtgttg caaatgcact tatctgcagc aaattgttat atggcatcga gattacttat      4980
     tctggtttcg aaaacttgat tcaaattctc ggcccagtat ataattcttc gattcgaatg      5040
     acatctggac tccttccaag ttcccctaca ctatctagct gtgttgaagc cggacatctt      5100
     ccctttgacc tcacgatagc aacagctatc gctactagag cagttcgtct agcggagaag      5160
     gctggcctaa acaaattcaa agaattgcta acaagtgctc aaaatctgtt tcaccgacta      5220
     actaatgcta catttccgcc tgtgtcccaa ctttgtcgag tcggagacag aagatgggat      5280
     gtacctgctc caccgattga ctggaccatc aaaaaagcga ttcgagctgg cgaagcgccg      5340
     gccaaagcga aagcagtctt ccagagtacc atccacgaaa agtatcaagg ataccatcaa      5400
     atatacaccg acggttctcg cagagataac aaagttggca ttggaatata cagctccact      5460
     gaagaaataa actaccgtct tccagatcaa atgtctgtat tttccgcaga agcagttgcc      5520
     cttaatcttg cagccaaaat ggcgtgtaga ctgagtggaa aatcagttat ttttacggat      5580
     tcagcaagcg tgttaacggc gttggaaaat cctagatcaa aacatccctg tgtacaatca      5640
     ctggaggagt tcaactcagg aaacattgta ttttgctggg taccagggca cagtggaata      5700
     tctggaaatg ttaaagcgga tatgttagct gggcggggtt gtactgcaag gcgcttacga      5760
     atcaaaacac caggagatga cataaagcac tacattaaat catcaataga tgacactttt      5820
     gctgcaagat ggaatgttga acgaaatgcg ttcttaagga agataaaaag ttcaacaaaa      5880
     aaatggaacg atcaatcgaa tcggaaacac caaattaatc tttcaagatt acgcgtggga      5940
     cattgcagat tttctcatcc acatgtgtgt ggcggaagca gagaagacag atgcgaatgt      6000
     ggtgctagaa cgaacactgt ggaacacgta ctagtaaact gccctgtata tgatgaccta      6060
     cgaaaaaggt atcacctgga gttatcaatt ggacaaattc tcgacaacga cccagttgtt      6120
     gaagaaaatt tactgctatt tcttaaagaa tctggtttgt ttaaaaaaat ctaattttta      6180
     tcaagataaa atgaattgta attaagatag aatgaattgt atgtaactaa gcaaaatcaa      6240
     tctcaagacg cgaacgactt aaccagttaa agcgtctcaa ataaagacaa ctaactaact      6300
     aactaa                                                                 6306
//
ID   I-76_AAe    repbase;    DNA;    INV; 7078 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-76_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7078
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1347-1347 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3183..6881
FT                 /product="I-76_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTSMATPNSSMTSLSSNRTDLHSRSTPLILQWNINGF
FT                 FKNLSELERLVHNYEPLVIALQEPHRAFTDTMNKTLRKKYTWTTKCGQNIY
FT                 HSVAIGVSIEIPHEPILIDSDLPMIAVRVSWPFPVTIVCLYLPNGRQPDLK
FT                 NRLMKAFESVADPIIILADGNGHHEAWGNRPSNTRGRIIHDFATEMNLHVL
FT                 NDGSSTFIRGQQETAIDISLASSTIANRFMWKTDKDSAGSDHIPIWINANN
FT                 IAPETSRRPRWLYKKADWMNFQFALASTIDSQPTSIEVLTTRIYEAATVSI
FT                 PRSSATPGRRALPWWSDGVKKAVKNRRKKLRAARRLPADHPEKKNAMTAYR
FT                 VAHLACRQLIREAKEASWRDFLDGINDTQSSTELWSRVNAIQGKRRTRGIA
FT                 LKINDHTTREPLVVADALADYFAGLSSHQKYPSNFLRKHPTPQQNVINFIV
FT                 PPDKGQAFNRLFSEKELSFALSKANGQSAGPDEIGYPMLRHLPAEGKVALL
FT                 EGLNREWTAGTLPSSWRTSLVVPLPKMTKSAHDVEHYRPIALTSCVAKIME
FT                 RLVNRRLMEYLVENSLLDKRQHAFRAGYGTGTYFASLGQALNDALEKEEHI
FT                 EMASLDLAKAYNRAWAPNILEQLAQWEISGNMLNFVKNFLSNRSFRVIIGN
FT                 HRSKLVNEETGVPQGSVIAVTLFLISMNSVFGILPKGVQIFIYADDILLVV
FT                 AGKHPAATRRKLQAAVNAVSRWTNRVGFEISAEKCSRIHICSEKHPVIRKP
FT                 IKIEGKAIPTRKTVKVLGVTFDRHLNFRQHFDLVKENCRNRVNLVKSIANK
FT                 RTKSDRKAQLRVANAVVCSKLFHGVEITSRAYEDMLLKLGPVYNNTIRAIS
FT                 GLLPSTPASSACVEAGVPPFKFKAVTAISMKAVSFLEHTKNRRSETFITNQ
FT                 TNRILNSVVNIKLPLVAKRQRNGAQSWQAKEPSIDSHIKNHFSRNCLPEEV
FT                 RAHFKEWVRTKYPFTEIRYTDGSKVPGINNTNVGIGIHSSSYEEAHGLSKL
FT                 CSVFSAEAAAIFQAASRHSEGPLLIVTDSASALSALQATENPHPWIQATQE
FT                 IVAGQGNHITFMWIPGHKGISGNEEADRLANLGRSKRPLTRNIPGADIKMW
FT                 LKNKTTDAWATVWQQDRTNFTGKIKNYVGTWKDLPNRRDQRVLSRLRTGHT
FT                 RISHNFNGGVGFRKQCDICRVHNTVEHFICSCPSTEHLRQQYGISSIRMAL
FT                 QNERNSETAILSFLKDAGMYEAI"
FT   CDS           join(761..2305,2269..3183)
FT                 /product="I-76_AAe_1p"
FT                 /translation="MAASSWGPPPSSWGDAPPDGAYPGQIDGSYTAATLPP
FT                 FMDSEQNHGELLLLRISGVDRPLPNAPFVIRKSVQRYVCGRIEGAFPEANR
FT                 ATYALKVRSLRQFNRLLTMTQLIDGTPVKITEHPTLNSTRCVVSCRDVIDV
FT                 TESELLEELKEQGVRDVRRITRRAGNGRENTPSIILTCRGTNRPDHIDFGY
FT                 IRCRSRPYYPSPMQCFNCWCFGHTKLRCKSKTSTCGKCSGNHPIPEDRTCS
FT                 NENYCKQCETKEHAISSRSCPLFKMENTIQRVKIDQGLSYPAARATVEGNL
FT                 GTRSYSKAVEVGNNDAIAELTRKVDQLTAVVEKKDNEITELRSALAARNTP
FT                 PPVDRSEIEELQAIIATQSNQIEALTNQLSNFLKMVMPAGTVALPSTSVQA
FT                 SEVPVPMANDPPSKNIHLTQNNQKSIELEISTDSDSASPNQSPNRINPTIN
FT                 LRTTRTSTAQHISKSTRPDTPVPTAAKSISSSPRTPNKRLLPRTEPVIQQQ
FT                 QKRIRHKSIPEGTGTIPMRKHPGRNRDHSHAVVPSKTNIIQSLSLLHHFAV
FT                 TTKRHTMPSFERQHNPSQTEKKHPKKQSCRRINKLEAMVQPDRPQHSIEQQ
FT                 YLLFFVDSRGASVLEAIPQPESLGRLRHPEETDEEFCASDSRGTDRPEVKE
FT                 PPEQFDRPRHPTDEENKESKNVKNPMRPPGSLGPSSADVFLTPELGDLPWR
FT                 QGVVGRGTDKGWLSYTPKDDEGYVASPSKNENGEVRQIISRSSSRANKRRT
FT                 FGHPGNLLPGGKSHPVSFYPVGLLLASEGPPSGALTHSTPITTKAKHTTCT
FT                 DWASKRACSGHRLYNYSQ"
XX
SQ   Sequence 7078 BP; 2174 A; 1738 C; 1586 G; 1578 T; 2 other;
     tgttcgtctt gctttcgctw cgaacagacg cgtttactac catcgtgcga agtttttatc        60
     atcgtttgtt aaccgtttgc ttttaatccg ttttttgtgt tacacgtgtg ttctgtaatc       120
     tgcaggggtt atcgtagctg gtctacgatc gcagtttttg tgtacgtgta tttacaacga       180
     tatcgcgaaa acaacgaacg tttgattgta gaaaagcccc ccttatccca ttttgtgcag       240
     ggagaggggg cggtgagact ccgcaagatc tcatttattg cgccaaagcg cattcgaaag       300
     cctcaaagcg aagacagttt cgtgagagtg aaccctattg aacttkgctg actattgtgc       360
     gggacatttc tctggtaata cttacctccc aacgcgtcgg tgggtgtccg aagtctttcg       420
     gaatctcttt cgagagagta acatttgtcg tccgtgagtt tgggttacgt cgggtacaga       480
     gaacgatact gtgagtggcc gtcagccgaa gaaaagagag ataagtgaga cgtgagactt       540
     tctccaggaa gagaagtgag aaaagggcga gaagaaaata taaacactga gcaacaagca       600
     acggcccacc aattcttgat gtgaagtgat cgaaaatatt tcctcgaata gtttcttgaa       660
     gaactcctgg ttcacgtaaa gtggacagta aattcttgcc gtctagtgca cgaaatcctt       720
     gcgtgtggtt ggtggtggtt ctctttcctc gggagccgcc atggcggcca gttcatgggg       780
     accacctcct tcgtcatggg gagatgcccc cccagacgga gcatatcccg gtcaaattga       840
     cggatcgtat accgcagcaa cgcttcctcc tttcatggac tccgagcaaa atcatggaga       900
     gcttcttcta ttaaggatct caggtgttga tcgacccctc ccaaatgcac ccttcgttat       960
     ccgtaaatcg gtgcagcgct acgtttgtgg acgtatcgaa ggtgctttcc cggaagcaaa      1020
     cagggccact tatgctttga aggtaagaag cctcagacag ttcaaccgcc tactaaccat      1080
     gacgcaactg attgacggca caccagtgaa gatcaccgaa catccgacac taaactcaac      1140
     gcgatgcgta gtgagctgtc gcgacgttat tgatgttact gaatcggagc tcctggagga      1200
     attgaaagag caaggagtta gagatgtacg gaggataact cgtcgagccg gaaatggaag      1260
     agagaacacc ccgtcgataa ttttaacctg tcggggcact aatcgaccgg atcacatcga      1320
     ttttgggtat attcggtgcc gatctaggcc gtactaccct agccctatgc aatgcttcaa      1380
     ttgctggtgc tttggtcata ccaagctacg ctgcaaaagc aaaacaagta catgtgggaa      1440
     gtgttcaggg aaccacccaa ttcccgagga caggacatgc tctaatgaaa actactgcaa      1500
     gcaatgtgag actaaagaac atgccatctc tagccgttcc tgtccgctct tcaaaatgga      1560
     aaacacgatt caacgggtta agattgacca agggctatcg tatccggcag ctcgtgcaac      1620
     agttgaggga aatcttggca ccagatctta ttccaaagcc gttgaagtag gtaataacga      1680
     tgccattgcg gaactcacca ggaaagtcga tcaattaact gccgtagttg aaaagaagga      1740
     taacgaaatt accgagcttc gctctgcact ggccgcgcgt aataccccgc caccagtgga      1800
     tagatcagaa atagaggaat tacaagccat tatagcaacc caatcaaacc aaatcgaagc      1860
     tctcaccaat cagctttcca actttcttaa gatggttatg cccgcaggta cagtcgcctt      1920
     gccgtcaaca tcagtacaag cttcagaagt accagtcccc atggcgaatg atccaccgag      1980
     caaaaacatc cacctgacgc aaaataacca aaaatcgatc gaactcgaaa tctctaccga      2040
     ctccgactca gcatcaccaa accagagccc aaaccgcatc aacccaacaa tcaatctacg      2100
     aacaacaaga acttcaactg ctcagcatat ctccaaatcc actcgaccgg ataccccggt      2160
     tccaaccgcc gcaaaatcaa tctccagctc tccaaggaca cctaataaaa gactgcttcc      2220
     acgcactgaa cccgtcatcc agcaacaaca aaagcgtatt aggcataaaa gcatcccgga      2280
     aggaacaggg accattccca tgcggtagtg ccatccaaaa ccaacatcat tcagtcgtta      2340
     tcactactcc accactttgc agttaccacc aagagacata caatgccttc atttgaacga      2400
     caacacaatc catctcaaac cgagaaaaaa cacccgaaga aacagagctg ccgacgcatc      2460
     aacaaactgg aagccatggt ccaaccggac cgtcctcagc attcaatcga acaacaatat      2520
     ctgctcttct tcgtggatag tcgaggcgcc agtgtactgg aagctatacc ccaaccggaa      2580
     tcactgggtc gacttcgaca tccagaggaa acagatgaag aattttgcgc ctcggatagt      2640
     cgaggcacgg acagaccgga agttaaggag ccaccggaac agttcgatcg acctcggcat      2700
     ccgacggacg aagaaaataa ggaaagcaaa aatgtcaaga acccgatgag accccctggt      2760
     agccttggcc cctccagtgc ggacgttttc ctcacaccgg aactggggga tctcccttgg      2820
     cgccaagggg ttgtcggaag agggacggac aagggatggt tatcctatac ccctaaggac      2880
     gacgagggat acgttgcaag ccccagcaaa aatgaaaatg gtgaagtaag acaaataatc      2940
     tcgagatcat cctcacgagc aaataaaaga aggacctttg ggcaccctgg gaatctcctc      3000
     ccaggtggta agtcccatcc cgtgtcgttt tatcctgttg ggttactgtt agctagcgaa      3060
     ggcccaccta gtggagcttt gacccattcg actcccataa ccacgaaagc gaaacacaca      3120
     acctgtacgg attgggcatc aaaacgggcc tgcagcggtc atagactgta taattactct      3180
     caatgacatc aatggctacg cctaatagtt ctatgacatc cttgtcatcg aatagaaccg      3240
     atcttcatag tagaagcaca ccgctgatcc tacaatggaa cataaatggt tttttcaaga      3300
     acttgtcgga acttgaaagg ctggtgcata attatgaacc tcttgttatc gcactccaag      3360
     aacctcacag agcattcacc gatacaatga acaagactct gaggaaaaag tatacctgga      3420
     caactaaatg cggccaaaat atataccatt cagtggccat aggggtttca atcgagatac      3480
     ctcatgaacc catattgatt gactccgatc taccgatgat tgccgtccgt gtttcctggc      3540
     cttttccagt aacgatagtc tgcctctacc taccgaacgg caggcaacca gatttgaaga      3600
     acagactaat gaaagctttc gaatcagttg cggatccgat tattatactt gctgatggaa      3660
     acgggcacca tgaggcatgg gggaatcgtc ccagtaacac caggggacga atcatccatg      3720
     atttcgcaac ggaaatgaat ctccacgttc tgaatgacgg ttcatcgacc ttcatccgag      3780
     gacaacagga aacagctatc gatatctcct tggcatcctc cacaattgca aaccgtttta      3840
     tgtggaaaac cgataaagac tcagctggta gtgatcacat cccgatctgg atcaacgcaa      3900
     acaacatcgc ccccgaaaca tcccgaaggc ctcgctggct gtacaaaaaa gcagattgga      3960
     tgaatttcca atttgcttta gccagcacaa ttgattccca accaacatcg attgaagtgc      4020
     tcaccacaag aatctatgaa gctgcaaccg tatctatccc cagatcaagt gctacacctg      4080
     gacgtcgcgc tctcccctgg tggtcagatg gagttaaaaa agcggtgaag aatcgaagga      4140
     aaaaactgcg agccgcaagg cggttgccag ccgaccaccc cgaaaagaag aatgccatga      4200
     cagcctatcg ggtagcgcat ctcgcttgcc gacagctaat cagggaagcc aaagaagcat      4260
     cttggcgcga ctttctcgat gggataaacg atacgcaatc ttccactgaa ctctggagtc      4320
     gggttaatgc aatacaaggc aaaagacgca ctcgaggaat tgccttgaaa atcaatgacc      4380
     acaccacccg agaaccactt gtcgttgctg acgccttggc tgattatttc gccggcttat      4440
     cttcgcatca aaaataccca agcaactttc taagaaagca tccaactcca caacagaacg      4500
     tgattaactt tatcgttcct ccagacaagg gccaggcctt caatcgttta ttttctgaaa      4560
     aagaacttag ttttgctctt agtaaagcaa acggccaatc agcgggccct gacgaaatcg      4620
     gctacccaat gctaaggcac ctccccgccg aaggaaaagt tgcccttttg gaagggctca      4680
     atagagaatg gacagctggc acacttccat ccagctggag gactagtctt gtcgttccct      4740
     taccaaaaat gacgaaatcc gcacacgatg tggagcacta tcgacccata gccctaacaa      4800
     gctgtgtggc gaaaataatg gaaaggttgg ttaaccgccg gctgatggaa tatcttgtag      4860
     aaaactcttt actagacaag cgccagcacg cctttcgggc tggatatggc actggaacct      4920
     attttgcctc actaggacaa gctctaaacg acgccttaga aaaagaggaa cacattgaga      4980
     tggcttcgct tgacctagca aaagcataca acagggcttg ggcaccaaat atattggagc      5040
     aattagccca atgggaaata tccggtaata tgctaaactt cgtgaaaaac tttttatcaa      5100
     accggagctt cagggtcata atcggcaatc atcgctccaa attggtcaat gaggaaacag      5160
     gagtgcctca aggatcggta atagcggtga ccctcttcct gataagcatg aacagcgtct      5220
     tcggaatact ccctaaaggg gtacaaattt tcatctatgc agacgatatt ttattagtag      5280
     tggccggaaa acatcctgcc gctaccagaa gaaaacttca agcggcggtg aacgccgtct      5340
     cacgctggac aaatcgagtt gggttcgaaa tttcagccga aaaatgttcc agaattcata      5400
     tctgctcgga aaaacatcca gtcatacgaa aacctatcaa gatagagggt aaggccatac      5460
     caaccagaaa aactgtaaaa gtattaggag tgacctttga caggcaccta aactttcgac      5520
     agcattttga ccttgtcaaa gaaaactgta gaaaccgggt gaacctggta aaaagtattg      5580
     cgaataaacg tacaaagagc gatagaaaag cacagttgcg agtagctaac gcagtagtct      5640
     gtagtaaatt gttccatgga gtagaaatca caagccgcgc gtacgaagat atgctactga      5700
     aattaggacc cgtatataac aatacaatcc gggcaatatc aggcctgcta ccgtctactc      5760
     ctgcctcttc agcatgcgta gaagccggag tgccgccttt caagttcaaa gctgtcactg      5820
     ccatcagtat gaaagctgtt agcttcctag aacatacaaa aaacagaaga tcggaaactt      5880
     ttatcaccaa tcaaacaaac cgaattctca actctgtggt caacattaag cttcccttgg      5940
     tggccaaacg gcaacggaat ggagcccaaa gctggcaagc taaggagccc agcattgact      6000
     ctcatattaa aaaccatttc agtcggaact gccttcctga agaagttcga gcgcatttca      6060
     aggaatgggt aaggaccaaa taccctttca ctgaaattcg atacacagat ggatcgaagg      6120
     tgcctggaat aaacaacaca aacgtcggaa ttggaatcca ctccagttca tacgaagaag      6180
     cacatggtct ttctaagctc tgttccgttt tctcggcgga agctgccgct atcttccaag      6240
     ctgcttctcg tcatagtgaa ggtccattgc tgatagtcac ggattcggcc agtgcactgt      6300
     cagctctcca agcaacagag aatccacatc catggattca agcgacacag gaaatagtag      6360
     caggacaagg gaatcacata accttcatgt ggatcccagg acataaaggg atttcaggaa      6420
     atgaagaggc agaccgccta gcaaatcttg ggcgcagtaa aaggccatta acgcggaata      6480
     ttccaggggc agatatcaaa atgtggttga aaaacaagac aacagatgcc tgggctaccg      6540
     tatggcagca agacagaacg aatttcaccg ggaaaatcaa gaattacgtt ggcacttgga      6600
     aggacctacc aaaccgtagg gaccaacgag ttctctcgcg actcagaact gggcacacaa      6660
     gaatttcaca caactttaac ggtggagtag gtttccggaa gcagtgtgat atatgtagag      6720
     tccacaacac cgtggaacat tttatctgta gctgtccgtc aacggaacat ctgaggcagc      6780
     agtatggcat atcaagtatt agaatggcat tacagaacga acgtaatagt gaaactgcga      6840
     tcctaagttt ccttaaagac gcgggaatgt atgaagcaat ttaaaactaa catcttcctt      6900
     cggacacgaa aactggctcc acgaatgaag ggagaatcta aatagacatg ataatgttga      6960
     tgcacaagaa aatactgata aatggtgttt aaaacattgt tacgcatata tgaacgagat      7020
     tgagtggcga actcgcccag ggcgaaaagc cactataata aagataaaaa aaaaaaaa        7078
//
ID   I-77_AAe    repbase;    DNA;    INV; 7908 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-77_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7908
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1348-1348 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           512..2137
FT                 /product="I-77_AAe_1p"
FT                 /translation="MMSGAYPHLSHPPGDPGPSNKRDGRHTGPTLPGWADP
FT                 LGDHGQVIILRIQGAERDLPNRPTLIRKSVEAYLGVKITDAYPERKGISYM
FT                 VKVRNQRHAEKLKGMKQLSDGFPIQIIEHPVLNQSKCVISCRESVNYETEE
FT                 ILDELKEQGVTAVRRITRREGNESVPTPTLILTIDGTVTPQNIDFGWIRCK
FT                 TRPYYPAPMLCYGCFDYGHTRARCQQKTPTCSNCCGEHTHTPEAPCQEAVF
FT                 CKHCKKSDHPVSSRKCPTYAKEVEIGKLRVDMGIGYPAARRIYESEHRTQT
FT                 AASIVAAGNDQRFAELNAKFDRLLIETGKKDAKLSALIAENQEKDDQINAL
FT                 ISSIKERDTMIAERDIRIAALEAAFTSVNERLPTATAVASFKGSSNDQIAL
FT                 PQRTKKGKKGTKENCSSADATTSAMDRLELTRKHGTIEDLVAENQLLKKKD
FT                 VIQSQVIESLRKGSEKRTATTMHNADDSHSSTPTNGNPSHKKSLGNRNSSE
FT                 TITKRTKTDQTTMEISDDESPKTNSQTSELYIPSDLFSSDEMNDEV"
FT   CDS           2197..7587
FT                 /product="I-77_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MATKKQEHRPKDQRVKQEGSRKENYTPKRHTTNFSRY
FT                 NSRPVGDGCSPLPITGHSGLSASFHAAQTALQLAEASPLVSTARVFSGSAL
FT                 TTSIYNVTLAPHRNNLRSPDSMTLKRSPQDNEGSSESNDNLTIPLRNIHGI
FT                 ETLDRVPGSRSPYSVKVITPPEPGNIPRYSVTSHIGNKKTYLKTKAVANCN
FT                 RSDPRGSAHRIPEDALTNARKYDLWRAAAGDFRLAVAGPSGVSSLLTAGLT
FT                 PLPVAGASPSASTGGALSESAQTTSCFIDIAASYYAKTNPTNKKGSRDHLI
FT                 LPLPDHEGPRNPDKASGSRGPPDAEVKAPPESGNNLRHSWANSGSEDDEEI
FT                 TGSSDNITIPLVNNFRNKLQDNVSASRGPPSVEVIAPPEVENIPRRRPAAN
FT                 PLKEKPIKPVSSSRPFYGLNPSDEPHPRRNPIRNCPSKYRSLTKIQDSSGT
FT                 TPRFSPPATNTDKYDDLYITHYGPATIISADTPALPPGHPGHFNPGGKSHP
FT                 CANDMTQPLHAHSTDLGLPENPNLGDESLVNPTQNTTNQSTLPSAGSSSPP
FT                 LIGEALSYSTSXSHSLSTSPNPSQNIASNRTHPYMARGGRIALAAQWNVNG
FT                 FFHNLQDVEMLVRDQQPVVLALQEIHRATPXVMNNTLGKKYQWYTKNYANI
FT                 YQSVAIGVAAELSASEIKIDTDLPIVAIRLPWPFSVSVASIYLPNGKQPNL
FT                 ESRLKDALKQIPEPMMILGDLNGHHRAWGSRRNCARGSIIVNVANQFNLTI
FT                 LNDGSPTFSRGRVDTAIDVSLVSTQITNRFLWSVESDLRGSDHAPIMLTLE
FT                 NTSAPETTRRPRWLYEQANWPDFQTSLETELEHHPPMSVSDLSALINEVAS
FT                 ITIPKTSPNPGRRALHWWTDEAKKAVKARRKALRAFQRAKKRLPEDHPDWT
FT                 LAQESYQVARNTCRQVIREAKDKSWTNFLDGITEEQSSSELWRRINCFNGK
FT                 RRAKGMALKVDGVTTKDPGVIADVLADAFHELSSIQKYPEPFLKRHPQPET
FT                 AVHRFQVPPDKGQPFNRPFSLKELEYALKKAKGKSAGPDEIGYPMLKNLPP
FT                 SGKAALLATINNEWTAGTLPDSWKHSYVVPIPKSSGPANDVGSYRPIALTS
FT                 CVAKLMERMANRRLIEHLVEKKKLDHRQHAFRPGYGTGTYLASLGQILDDA
FT                 QKNGEHAEMAALDLAKAYNRAWTPGVLDKLARWGITGNMLLFVKNFLDGRS
FT                 FQVVVGNHKSKVVREETGVPQGSVLAVTLFLVAMSGVFLALPKGIFILLYA
FT                 DDILLIVTGKHPKSIRRKLQAAVSAVTKWAQDAGFDIAAEKCARLHVCQTR
FT                 HKPPQKPITVNGRPMPTRKTVKVLGVNIDRYLTFRTHFDRVKEACKNRVRL
FT                 IRSISGRRTTSDRATRLRVADAIINSRLLYGIELTCRAFDTMVSCLSPTYN
FT                 STVRTLSGLLPSTPAAAACAEAGILPFRYKAAMTICKRAVSYLERTEGDGQ
FT                 VCFLEEQANYALRAVAGSTLPPVAGLHRVGPRSWKAREITFDSTIKSQFRR
FT                 GATPAAVKTCFRQILEERYSDTEVRYTDGSKLAGRVGIGIHGTSLDLAYRL
FT                 PEQCSVFSAEAAAIYLAVAKDSQAPVLIVSDSASALSAIGSCTNRHPYIQA
FT                 TQTKLDNTSGPITFMWVPGHCGIIGNERADALASLGRQSRFRTNEVPGEDI
FT                 KVWVKTTIWNAWATEWTRDRSSFLRQIKPDVLPWTDVRDWREQRVLTRLRT
FT                 GHTRATHNMGDGRNFRKFCETCNTRNTVEHIISNCPIYEYPRRQYDITSTS
FT                 RALQNDPACERILLNFLKEAGIFNEL"
XX
SQ   Sequence 7908 BP; 2253 A; 2226 C; 1867 G; 1554 T; 8 other;
     gtcattcgac agttcggttt taccgcgacc agtcgcattt tcctactcga ggtagagtat        60
     tttctccgtc gctagtgatt ttttwctkag ttttacccag tgagtttggc taaaagtgca       120
     gttgggatcg cggaccacta cggaactgtg ggcatccatc gtgaaatcgg ccaggtgagc       180
     tgtttttaca gttaagaaag tgggcaaack tttattgaac aagtgctggc ggccattgtg       240
     tccaccatca cgtgtttcga gtcgttgttg gagcacgttc acaacttgat taacgaacgt       300
     tggttcgact acccaccgct tggcggtggc gaagatatcg acatagtagg gtcctttgga       360
     atttgaattg acggttggts attcttaaaa gctctgtgtg gcgcggtaga agaattatta       420
     atttagggta aacaatataa atccattgcc cgggagtgtt attattgcgg aaagtttcaa       480
     agacgcaaac aastactggt agtctcccga catgatgtcg ggggcctacc ctcatctctc       540
     tcatcccccg ggggaccctg gtccctccaa taaaagggat ggaagacaca caggaccaac       600
     cctgccagga tgggctgatc cattgggcga ccacgggcaa gtgatcatcc tacggattca       660
     aggggccgaa cgagatctgc cgaatagacc gaccctaatc aggaagtcgg tcgaagcata       720
     tctgggcgtc aaaattactg atgcttaccc ggaaaggaaa ggaatctcct acatggttaa       780
     ggtacgaaac cagcgacacg cagagaagct gaagggaatg aagcagctga gcgacggatt       840
     cccaatccaa atcatcgagc acccagtgct taatcagagc aaatgcgtga tcagttgccg       900
     cgaatcggtt aactatgaaa cggaggagat tctcgacgaa ctaaaggagc agggagttac       960
     cgcggtccgt cgtatcacac ggcgagaggg caacgaatcc gtaccaacac cgacattgat      1020
     cttgacgatc gacggaacag tgacaccgca aaatatcgac ttcggttgga ttcgctgcaa      1080
     aacaaggccg tactatccag cacctatgct atgctatggg tgcttcgact acggccatac      1140
     gcgtgcccga tgccagcaaa aaactccaac gtgcagcaac tgctgtggtg agcacacaca      1200
     tacacccgag gccccatgcc aggaagcagt attctgcaaa cactgcaaaa agagcgacca      1260
     cccggtgtca agcagaaaat gccccacsta cgctaaggaa gtggaaattg gaaaacttcg      1320
     ggtcgacatg ggtatcggat acccagcagc ccgtagaatc tacgaaagtg aacaccgcac      1380
     acaaactgcc gcctccatcg tcgctgccgg aaatgaccaa cgctttgctg aactgaatgc      1440
     aaagttcgac cggttactca tcgaaactgg aaaaaaagac gcgaaactaa gtgccttaat      1500
     cgctgaaaat caagaaaagg acgatcaaat taacgcactt atcagttcga ttaaggaacg      1560
     ggacacaatg atcgcagaaa gggacataag aatagcagcc ctggaggctg cgtttacctc      1620
     ggttaatgaa agactgccga ccgccaccgc agtagcttcc ttcaagggat cctcaaatga      1680
     ccaaatcgcc ttaccccaac gtaccaaaaa gggaaaaaaa ggcacaaaag aaaactgctc      1740
     ctccgccgat gctacgacat ctgccatgga ccggctggaa ctaacccgaa agcatggcac      1800
     gattgaagac ctagtagccg agaaccagct attgaagaaa aaggacgtga ttcagagcca      1860
     ggtaatcgaa tctcttcgaa aggggtcaga aaagaggacg gccaccacca tgcacaacgc      1920
     tgacgatagc cattcgtcaa cgccaaccaa cggtaatcct tcccataaaa agtcactcgg      1980
     taatagaaat agttcagaaa ctatcaccaa acggacaaaa acagaccaaa ccacgatgga      2040
     aatctcagac gacgaatctc cgaaaacaaa ttcccaaaca tcagaactat acatcccttc      2100
     cgacttgttc tcgtcggacg agatgaacga tgaagtctga agttatcact tcttaagccg      2160
     cccaccaaac tctgcacact gccataacat ccactaatgg ctaccaaaaa acaagaacat      2220
     cgaccaaagg atcaacgggt aaaacaagaa ggctcaagaa aggaaaacta tacacccaaa      2280
     aggcatacca ccaacttctc acggtacaac tccaggccgg ttggcgatgg atgctctccg      2340
     ttgccaataa ctggccattc aggattatca gcttcattcc acgcggctca aacggccctg      2400
     cagttagcgg aggcctcacc gttagtttcc accgctagag ttttctcggg atccgcccta      2460
     acgaccagta tctacaatgt tactcttgca cctcaccgta acaacctccg gtcccctgat      2520
     agcatgacgt taaaacgctc accacaggac aatgagggaa gctcagagtc gaatgataac      2580
     ctcacaatcc ccctaaggaa catccacgga atcgagactc ttgatagggt cccgggcagt      2640
     cggagcccgt atagtgttaa ggtcattact ccaccggaac ctgggaacat tccccggtat      2700
     tcggtgacaa gccacatcgg aaataagaaa acctatctaa agacaaaagc cgttgctaat      2760
     tgcaacagat ctgacccacg aggatcagca caccgcatcc cggaggatgc actaacaaat      2820
     gcacggaagt acgacctttg gagggctgca gctggtgact ttcggttggc agtagccggt      2880
     ccttcagggg tatcgtccct tttaacagcg ggtctgacac ccttgccggt agcgggggcc      2940
     tcaccgtcag cttctaccgg tggggctctg tcggagtccg cacaaacaac tagctgcttc      3000
     atcgacattg ccgcatccta ctatgcaaaa acaaatccaa cgaataagaa agggtcgcgt      3060
     gatcacctca tactccccct accggaccac gagggaccaa gaaacccgga taaggcctcg      3120
     ggtagccggg gcccccctga tgcggaagtc aaggccccac cggaatcagg gaacaacctc      3180
     cggcactcgt gggcaaactc cggtagcgag gacgatgagg aaattacagg gtcgagtgat      3240
     aacatcacaa tccccctggt taacaacttt agaaacaaac tccaggataa tgtctcggct      3300
     agtcggggcc ctcctagtgt ggaagtcatt gccccaccgg aagtagagaa catcccccgg      3360
     cgtcgtccgg cggcaaaccc cttaaaggaa aaaccgatca agccagttag cagctctagg      3420
     cccttctatg gccttaaccc gagtgatgaa cctcacccca gaagaaaccc tatcagaaat      3480
     tgtccaagca agtatcgatc ccttacaaaa atccaagact cttcgggcac aacaccacgc      3540
     ttctccccac cagcaacaaa cactgataag tacgatgacc tgtacataac ccattacggt      3600
     ccagcgacaa taatctccgc ggacacccct gccctacctc ctgggcaccc cgggcacttc      3660
     aacccgggcg gtaagtccca cccctgtgct aacgacatga cacaacccct acatgcacac      3720
     agtacggacc tcggtctccc cgaaaaccca aacctgggtg acgaatccct tgttaatcca      3780
     acccaaaata ccaccaacca gagtactctg ccctcggcgg gtagctcatc accacctttg      3840
     attggtgaag ctctgtctta ttcaacctcc gwctcccact cgctgagcac gagcccaaac      3900
     ccctcccaga acatcgcctc caatagaacc cacccgtata tggcccgcgg tggccgaatc      3960
     gcccttgccg cgcagtggaa tgtgaatggc ttctttcaca accttcaaga cgtagaaatg      4020
     ttagtgcggg atcagcagcc tgtggtcctg gctctacaag agatccacag agcaacacct      4080
     gmagtgatga acaatacact aggcaaaaaa taccaatggt acaccaagaa ttacgccaac      4140
     atctaccaat cggttgccat cggagtggcc gccgaactct ccgctagcga gatcaagata      4200
     gacactgatc taccgattgt tgcgatccgc ctcccgtggc ccttctccgt ctcggtggct      4260
     tccatttacc taccgaacgg caagcagccc aatttagaat cccgactcaa ggatgctctt      4320
     aagcaaattc cagagccaat gatgatccta ggcgatctca atggccacca tcgagcttgg      4380
     ggcagccgcc gcaactgtgc gcgtggctcc atcattgtta atgttgcaaa ccagttcaat      4440
     ttaacgatcc ttaacgacgg ttccccaacc ttctcccgtg gacgagtcga caccgcgatt      4500
     gacgtctccc tagtatcaac tcaaatcacc aaccgcttcc tctggtcagt ggagagcgat      4560
     ctccgaggga gcgatcacgc accgatcatg ttaaccttgg aaaacacttc ggcacccgaa      4620
     acaacgcggc gaccacgctg gttgtatgag caagcaaatt ggccggattt ccaaacatcg      4680
     ctcgaaaccg agttagaaca ccaccctccc atgtccgtct cggacctatc cgccctcatt      4740
     aacgaagttg cgtctattac catccctaaa acaagcccca acccgggacg tcgcgcgctc      4800
     cactggtgga ccgatgaagc aaaaaaagca gtcaaggccc gcaggaaagc gctccgggcc      4860
     ttccaacgcg caaaaaagag acttcccgaa gaccatccgg actggaccct tgcccaagaa      4920
     agctaccagg ttgcccgtaa cacctgccgt caggtgattc gagaggccaa agacaaatcc      4980
     tggacaaact tcctggacgg cattaccgaa gagcagtcgt catctgagct ctggcggcgc      5040
     attaactgct tcaatggcaa aagacgggcc aaaggtatgg ccctaaaagt tgacggtgtt      5100
     acaacaaaag acccgggtgt catagccgac gttctggcgg atgcttttca tgagctctca      5160
     tcaattcaaa aatatcccga acctttcctc aaacgccacc ctcaaccaga aacagcggtt      5220
     caccgtttcc aagttcctcc agacaaaggc caacctttca accgtccttt ctcgctcaaa      5280
     gagcttgagt acgccctcaa aaaagcgaag ggaaaatcag ctggacccga cgaaatcggg      5340
     tacccgatgc tgaaaaatct tcctccaagc ggtaaagccg cattactggc aaccatcaac      5400
     aatgagtgga ccgccggtac gcttcctgat agctggaagc acagctatgt cgtgcccata      5460
     ccaaaaagct ccggtcccgc caacgatgtt ggaagctacc ggccaatcgc tctgacgagc      5520
     tgcgtggcca aactcatgga aaggatggca aaccgcagac tgatagagca cctcgtggag      5580
     aagaaaaagc tggaccatcg gcagcatgcc ttccgaccag ggtacggcac tggcacttat      5640
     ctggcctctc tcggccaaat cttagacgat gctcagaaga atggcgagca cgcggaaatg      5700
     gcagcacttg atctggccaa ggcctataac cgagcgtgga cacccggagt gcttgacaaa      5760
     ctagcccgct ggggaataac aggtaacatg cttttgtttg tcaagaactt ccttgacggg      5820
     cgatcattcc aagttgttgt gggaaaccac aaatccaagg tagtgagaga agaaactggc      5880
     gtaccacagg gatcagtgct agcggttacc ctgttcctag tggcaatgag cggcgtattc      5940
     ttggcgctcc caaaggggat cttcatctta ctgtatgccg acgacatact attaatcgtt      6000
     acagggaaac accccaagag catccgacgc aagctgcagg ctgcggtatc ggctgtgacc      6060
     aagtgggcac aggacgccgg tttcgacatc gccgcggaaa agtgtgcaag gctgcacgtg      6120
     tgccaaacca ggcacaagcc accacaaaaa ccaatcacgg tcaatggcag accaatgcca      6180
     acaagaaaaa ccgtcaaagt cctcggtgtg aacatcgatc ggtacttgac attccgcact      6240
     cacttcgacc gtgtcaaaga ggcctgcaaa aaccgggtga gactgatccg tagcatctca      6300
     ggtagacgta ccacaagcga cagagcaacc cgactgcgcg tagctgacgc cataatcaac      6360
     agtcgactcc tttacggaat tgagctaacc tgccgagcat tcgacacaat ggtgtcctgc      6420
     ctgtctccga catataacag tactgtgaga acactatcgg gcctacttcc ttcaactccg      6480
     gccgccgccg cttgcgcaga agccggtata cttcctttcc gctacaaggc agcgatgaca      6540
     atttgcaaac gtgcagtcag ctatctggag cgcacggagg gcgacgggca ggtttgcttt      6600
     ctcgaagagc aggccaacta tgccctgaga gctgtggccg gttccacgct tcccccggtg      6660
     gccgggctcc accgtgtagg accgagaagc tggaaggcca gagagatcac cttcgactcc      6720
     acgatcaagt cccaattcag aagaggcgca acccctgcag cggttaaaac atgcttccgg      6780
     caaatattgg aggaacgata cagtgacacc gaagtacgct acacggatgg ttccaagcta      6840
     gcgggccgag tgggcattgg tatccacggc accagcttag atctagcata ccgtctgcca      6900
     gaacagtgtt ctgtgttttc cgccgaagca gcagcaatct accttgcggt cgctaaggat      6960
     agccaggctc cggtccttat tgtgagtgac tctgctagcg ccctgtcagc gattggatca      7020
     tgtaccaaca ggcaccccta cattcaggcc acgcagacta aactggacaa cacaagcgga      7080
     ccaataacgt tcatgtgggt acccggtcac tgcggcataa tcggcaacga acgagccgac      7140
     gcactggcta gcctcggccg gcaaagccgt tttcgaacaa atgaagtccc gggtgaagac      7200
     atcaaggtct gggtaaaaac cactatatgg aatgcatggg cgactgagtg gacgcgtgac      7260
     agatcctcct tcctccgaca aatcaagccg gacgtcttac cgtggacgga cgtgcgtgac      7320
     tggagagagc aaagggtcct aacgcgcctg agaacaggcc acactcgagc aacccacaac      7380
     atgggggacg gcaggaattt ccggaagttt tgcgagactt gtaacaccag gaacaccgtc      7440
     gagcacatca tcagcaactg ccctatctac gaatacccca gaaggcagta cgacataaca      7500
     tccaccagcc gagcgcttca aaatgacccc gcctgcgaga gaatcctact taacttcctc      7560
     aaggaagcag gtatcttcaa cgagctttga cgaactttga cgagttcgaa gaatacagtc      7620
     aaacacccca ctggacaact aacacagcaa cggacacgga cacgaaaatg gcactgaaac      7680
     ggtaacacaa aaacaggaaa cgaatgattt acgatgaaga cctaggatgg aacaaaaaac      7740
     ggactgagat ttggattacg tttaaaattg tacagcaaca ttggtgagag atacccctcg      7800
     ggtacactca ttttttcttt ttttttcttt tcttttattt ttcaccgaga tgagccagcc      7860
     tcgggctgca aatctcgtta ataaagataa taataataat aataataa                   7908
//
ID   I-78_AAe    repbase;    DNA;    INV; 6456 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-78_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6456
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1349-1349 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           548..1912
FT                 /product="I-78_AAe_1p"
FT                 /translation="MSTPYGGDPEGSLGPRYPSFMDPQNEFGRLTILQMTG
FT                 KDGAALPVDPDLIGKSIEAVVGNKAIESAQSEERCSRYILRVRNPVHVTKL
FT                 LNTTTLLDGTEITIVPHPRLNSSKCVISSFDAIHYSEAEALEKLRSQNVTH
FT                 VKRITRNDNGKLINTPALVLTFNQTTYPNHVKIGLLRIPTRPFYPNPLLCY
FT                 ACFRYGHPKLRCPGPNRCNNCSEEHDGDSCQAPAFCCNCQGDHRPGSRKCP
FT                 VYRKEAAVVKLKVDGNLTYPEARRRIEEGQGSYAQVTAQSRLDASKFEELM
FT                 AENKKKDETISKLLEDNKKKDGMILKLFEEMKTKNSLLESLERKVEALQPY
FT                 FSTPTNKQTDNVALPPSGSEHESRDQQKPVVITTSSLKGISKRKTKKEEEH
FT                 LKQMRSVLNTSPEGSRSPPKKTMKSAISHLELDPMIEYIDEEEIVDISDGD
FT                 PAPESSTSSI"
FT   CDS           1848..6350
FT                 /product="I-78_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKKKLWISLMVIQHQKAVPPPFKFFKTKTQACNITPT
FT                 NAPSQFTAQNAETPIHHISQTNEERLGRGESAVPLPLPQAEAHLRGRTVRE
FT                 AIPQPVDGESLRAALEDNASNPPIVTRTNATPVTSKSNDQIRKSFMGFENP
FT                 RPHPTLTLPGKITRRPREAFQAAVGVGGLISQASTFNKATEPPYVVSPSLS
FT                 VPTHTSEDRLQDHSLRKPDHVQPNQPEEAVLHSSRAPLPSTVVSNSAEYDR
FT                 LFHIQQTASASHTTVTHSDLILQEYPTPPRPEDCESTRMSSSSASTTSTSR
FT                 RTATPLALQWNINGLFNNLSDLQLLTHENPPQVLALQEIHCRKSDGDAFNQ
FT                 LLRRQYKWYIKTGSTRFQNVAIAVRHSAPHTPVQLNTPLIALAVKMEFPFP
FT                 HTVVSIYLPQNGVDELGTLLQNLLNQLEKPVLILGDMNSHHYAWGSSKTDK
FT                 RGSVILQVAEENDLIVLNDGSATFSRCSYQSCIDVSLASCEMLRLLRWTIH
FT                 TDPMGSDHHPIEILSTEVLPKITRRPRWRLDDANWETYEQDLLTSINPEHV
FT                 YDPEQLGELILDAAKANIPRTSSKPGRKALHWWSDVTKAAVKARRKALRRR
FT                 KRTPKDHPDWSNINKEYQLLRNECRDIIRKAKQNSWEEFLEGFDSNQSTTE
FT                 MWRRVNALSGKRRSQGITIRQHDTVSNDPAFVANSIGEYFAKISSQSLYPP
FT                 NFLATQKKSKYPSINIAIPDDTNNHDYNMPFTVEELLFALDSTKSKSAGPD
FT                 ELSYLLFKRLPFRVKISLLESFNNVWTMGLFPNGWRHSLVVPIPKQGTYSS
FT                 DPSHYRPIALTSCASKIMERMVNRRLTLILQDKLDQRQHAFLKGRGTGSYF
FT                 ASFAQIIDDALSNNLHVDIAALDLAKAYNRVWRPQVLRQLIDWGIVGNMGK
FT                 FIQGFLQQRSFQVLIGNTRSKMFQEETGVPQGSVLAVTLFLIAMNSIFDRL
FT                 PKGIFIFVYADDIIIVVVGKSPKIIRRKLQAAVRAVAKWAENVGFTMAAEK
FT                 CSVTHCCTFRHHPWKTPVTIGQCEIPYKKELRILGVIIDRKCNFEAHFNKI
FT                 KKETECRIRLIKAISGRHKSNNRRSLSNIACSIVISKLLYGLEITVRSYID
FT                 LINLLSPVYNRVIRLTSGLLPSSPTLATCVEAGVLPFHYLLTITAANRAIS
FT                 FLEKTYGDSRNVFVLEKAKQLLTENANIRFPPIAQVHRVGDRKWNQPAPTI
FT                 DWSVKRTIRAGDSAARVSAVLNHLLNTKYTSHKKIFTDGSRARGKVGIGVY
FT                 SDNLSVARRVPDEFSVFSSEAAAIRLAINLINDPAVPTVILTDSASVLSAL
FT                 ENPQQKHSIIQEIEAAISSNTTLCWIPGHCGIKGNEQADRLADQGRNSRMW
FT                 SLSIPGIDARRSIQQCVYESWQHQWFMNRDLFLRKIKVDIGKWNDRKLRRE
FT                 QQILSRLRVGHTRVTHPHYISNTCRPICPACAVPITVEHLLVNCTELELDR
FT                 TTINLQTSIAGILQNSEAEETKLIALLKKTDLYTKI"
XX
SQ   Sequence 6456 BP; 2082 A; 1584 C; 1340 G; 1450 T; 0 other;
     agtgtgcgtg aatagccaaa gcgtaaatac gtcgcgaact tttcacctac gtttttcgta        60
     aaattatccg tgactcgtcg tggaaaaatt cttgctccaa ccggacgcaa agatctaccg       120
     accgcggaca atttcgctag tgtctctatt ggtcgaatcg accataaatc actatttagt       180
     ggttgcaaaa tcggttccac ttgttctaaa caagtgtacg atccgcgtcc attacaacac       240
     actcgtcgac accgaacgtt ggtttattcg ttcacagtga tagtgttgtt atcactacaa       300
     ctcaacgttt tgaccgtgtg tgactgagtt gtgagtgacc atcgctgtat tcagcgcatc       360
     atttgcagct atacgaaaca catagagacc agacgatcga ccgaacagtg ggagaaatcg       420
     aattcaaaat tggtcactga ccaatttata ttggggtagg taacaggtga ctgttaccca       480
     tcattggctc gttttcgatc tccgagtgca tgaaaaaaac taccgcatag ctgacaagac       540
     agaaacaatg tcaactccct acgggggcga ccccgaaggg tcgttgggtc caagataccc       600
     gagtttcatg gacccacaaa acgaattcgg tcgactaacg attttgcaaa tgactgggaa       660
     agatggagct gctttacccg tggatcctga tttgataggg aagagcattg aagcagtagt       720
     gggaaataaa gcgattgaat cggcacagag cgaagaacgt tgctcacgct acattcttcg       780
     tgttcggaat ccagttcacg tgaccaaatt gctcaacaca accactctac tcgacggaac       840
     ggaaatcacc atagtacctc atcctcggct caacagcagc aaatgcgtaa tctcgtcgtt       900
     cgatgccatc cactactcgg aggcagaagc tctcgaaaaa ctgcgcagcc aaaatgtaac       960
     acacgtcaaa cgaatcacac ggaacgacaa cggcaaatta atcaacaccc cagctctagt      1020
     actgaccttc aatcaaacca cctaccctaa tcacgtgaaa atcggacttc tgcgtatccc      1080
     aactcgtccg ttttacccaa atccccttct ttgctatgct tgtttccgat acggccaccc      1140
     aaaactacga tgcccaggcc cgaatagatg taacaactgc tctgaggaac acgatggtga      1200
     tagctgccaa gcgccggcct tctgttgcaa ctgtcaaggt gatcatcgcc ctggcagtcg      1260
     gaaatgtcca gtataccgaa aagaagcagc cgtcgtaaaa ttgaaggtgg atgggaattt      1320
     aacctaccca gaggccagaa gacgtatcga ggaaggacaa ggttcatacg cgcaagtcac      1380
     tgcccaatct cggttggatg ccagtaaatt cgaagaacta atggctgaga ataaaaagaa      1440
     agacgaaacc atttcaaaat tacttgagga caacaagaag aaagatggaa tgatactgaa      1500
     actcttcgaa gaaatgaaaa cgaaaaactc gctgttggaa tctcttgagc gaaaggtgga      1560
     agcgttacaa ccgtacttca gcaccccgac taataagcaa actgacaatg tagccctgcc      1620
     gccgtcgggt tcggaacacg aatcacgcga ccagcagaaa ccagttgtca ttaccacaag      1680
     cagtctcaaa ggaatcagca aacgaaagac caagaaagaa gaagaacatt tgaaacaaat      1740
     gaggagtgtc ctcaacactt ctcctgaagg ctcaagatct cctcccaaga aaacgatgaa      1800
     gtccgccata tcccacttgg aactagaccc aatgatagaa tacatcgatg aagaagaaat      1860
     tgtggatatc tctgatggtg atccagcacc agaaagcagt acctcctcca tttaagttct      1920
     tcaagacgaa aacacaagca tgtaatatta cccctaccaa cgcacctagt cagttcaccg      1980
     cccaaaacgc agaaacccct atacatcaca tcagtcaaac aaatgaggaa aggcttggga      2040
     gaggggaaag tgcagtaccc ctcccacttc cacaagcgga agcgcatctg agaggaagaa      2100
     ctgtccggga agccataccc caacccgtag acggggaatc cctcagagcg gccttagaag      2160
     acaacgcttc aaatccacca atcgtaacga gaacaaatgc aacccctgta accagcaaat      2220
     caaacgacca gatccggaaa agtttcatgg gtttcgaaaa ccctaggcct caccccacac      2280
     tgaccctgcc tggaaaaatc accagacgtc cccgagaagc attccaggcg gcagtaggtg      2340
     tggggggcct gatatctcag gcaagtacat tcaataaagc caccgaacca ccgtatgtag      2400
     tctcgccatc cctttcagtc cccacgcata cttcggagga tcgacttcaa gatcactcgc      2460
     tccgaaaacc cgaccatgtt cagccaaatc aacccgagga agcagttctg catagcagcc      2520
     gagcaccact accatcgaca gtagtatcaa actccgcaga gtacgatcga ctgttccaca      2580
     tccaacagac ggcgagtgcc agccatacta cagtcacgca tagtgacctt attctacaag      2640
     aatacccaac tccaccaaga cccgaagact gcgaatctac acgaatgtca agctcttcag      2700
     catcaacaac ctcgactagt cgcagaactg caactccact ggcgttgcaa tggaacataa      2760
     atggactttt caacaacctc agcgacctgc aactattgac gcatgaaaat cccccacaag      2820
     ttttagcatt acaggaaatc cactgcagaa aatcggatgg tgatgcattt aatcagcttc      2880
     ttcggaggca atacaagtgg tacatcaaaa ctggctcaac tcgctttcag aatgtcgcaa      2940
     tcgctgtgcg ccattcagct ccacatactc cagttcaact caatacgcct cttatcgctc      3000
     ttgctgtgaa aatggaattt ccctttccac atacagttgt ttccatatat cttccacaaa      3060
     acggtgtgga cgaactagga acccttctac aaaatctgct taaccaactt gaaaaaccag      3120
     tactaatact aggtgacatg aacagccatc actatgcctg gggatcatcg aaaaccgata      3180
     aacgaggaag tgtcatacta caagtagccg aagaaaacga tctaatcgtc cttaacgacg      3240
     ggagtgcaac cttttcccgt tgcagttatc aatcttgtat tgacgtttcg ctggcttctt      3300
     gtgaaatgct tagactttta agatggacta tccatacaga tccaatgggc agtgaccatc      3360
     atccaattga aattctaagt accgaggtct taccaaaaat caccaggcga ccaagatggc      3420
     gactcgacga cgcaaactgg gagacttatg agcaggactt actcacctcg ataaatccag      3480
     aacacgtgta cgaccctgag cagctaggcg aactaatcct agatgctgct aaggccaaca      3540
     ttccaagaac gagcagtaag ccaggaagaa aagcgctaca ttggtggagc gacgtaacga      3600
     aagcagcagt gaaagctcgc agaaaagccc tccgcagacg aaaacgaact cccaaggatc      3660
     atccagactg gagtaacatt aataaagagt accaactact tcgaaacgaa tgcagagaca      3720
     tcatccgaaa agcgaaacag aattcatggg aagaatttct agaaggtttc gatagcaacc      3780
     agtccaccac tgaaatgtgg cggagagtta atgctttaag cggaaaaagg agatcacaag      3840
     gaatcactat acgacaacac gataccgttt caaatgatcc tgcctttgta gccaacagca      3900
     tcggagagta tttcgcaaaa atctcatcgc agtcgctata cccgccgaat ttcttggcca      3960
     cccagaaaaa gagcaaatac cctagcatca acatagcaat ccccgatgat accaacaacc      4020
     acgattacaa catgcctttt accgtcgaag aattgctatt cgccctcgac tctacaaaaa      4080
     gcaaatcagc aggacctgac gaacttagct accttttatt caagcgtcta cccttccggg      4140
     tgaagatatc ccttcttgaa agcttcaaca acgtctggac tatgggcctt tttccaaatg      4200
     gatggagaca tagtttggtg gtacctatac ccaagcaggg aacatactca agtgatccaa      4260
     gtcactatcg accgattgcg ctaaccagtt gcgcatctaa aattatggaa cgtatggtga      4320
     ataggcgcct aacgttaata ctccaggata aacttgatca aaggcagcat gcattcctta      4380
     aaggtagggg tacgggttca tactttgctt cgtttgccca aataattgac gatgctcttt      4440
     cgaataacct ccatgtggat atcgctgctc tggatctcgc aaaagcttac aacagagtat      4500
     ggcgcccaca agttctgaga cagctcatag attggggcat cgtcggaaat atgggaaaat      4560
     ttattcaagg ctttctgcag cagagatcct ttcaagtgtt gataggaaac acgcgttcaa      4620
     aaatgttcca agaggagaca ggagtgccac aaggctccgt cctggcggta acactttttc      4680
     taattgccat gaattctatc ttcgatagac taccgaaagg cattttcata tttgtctatg      4740
     cagatgacat aataatagtt gtcgttggaa aaagtccgaa aataattcga aggaaactac      4800
     aagcagctgt tcgagcggtt gctaaatggg cagaaaacgt tggattcacc atggctgctg      4860
     aaaaatgctc tgtaacacac tgctgcacct tcagacatca cccatggaaa actccagtaa      4920
     cgataggaca atgtgaaata ccctataaaa aagagctgcg aatactcggt gtcataattg      4980
     ataggaaatg taatttcgaa gcgcatttca ataaaataaa gaaggaaacg gagtgcagaa      5040
     taagactaat caaagcaata agcggtaggc acaaatcaaa caaccgaaga tctctctcca      5100
     atatcgcttg tagcatagtt atcagcaaac tcttgtatgg attagaaatt accgtgcgct      5160
     catacataga tttgattaat ctccttagtc cagtatacaa cagagtaatt cgtctcacat      5220
     ctggcctact tcccagttct cctactctag ctacatgtgt ggaagctggt gtactacctt      5280
     tccactatct tctgacaatt acagcagcta acagggcaat cagctttctt gagaaaacat      5340
     atggagacag cagaaatgtt ttcgtcctcg agaaagccaa acaacttctc acagagaatg      5400
     cgaacatacg tttcccaccg atagcacaag tccatcgggt tggagacaga aaatggaatc      5460
     aaccagcccc aacaattgac tggtcagtga agcggactat tcgagcagga gattcagctg      5520
     ctagagtatc ggcggtactc aaccatttgc tgaacactaa gtacaccagt cacaaaaaaa      5580
     ttttcacgga cggatctaga gctagaggga aagttggtat tggcgtatac agcgataact      5640
     tgagcgtagc tagaagggtt ccagacgagt tctccgtttt ttcttctgag gccgcagcaa      5700
     ttcgtcttgc tatcaatcta ataaacgatc ctgcagtccc aaccgttatc ctcactgact      5760
     cagccagtgt tctttcagca ttagagaacc cacaacagaa acattctatc atccaagaaa      5820
     tcgaggctgc aatctcatcc aacaccacgc tctgctggat acctggacat tgtggtatca      5880
     aaggtaacga gcaggcagac cgccttgctg accaagggag aaactctaga atgtggagcc      5940
     taagcattcc aggaattgat gcacgacgaa gtatccaaca atgtgtctac gaatcgtggc      6000
     agcaccaatg gttcatgaat cgtgaccttt ttcttcggaa aataaaggta gacataggga      6060
     agtggaatga tcgaaaattg cgcagggaac aacaaattct atcgcgactc agagtcggac      6120
     acactcgagt aacacatcca cactacattt cgaacacctg caggccaata tgtccggcat      6180
     gtgcagtgcc tattactgtg gaacatcttc ttgtaaattg cacggaacta gaattagata      6240
     ggactactat aaatttacaa accagcatcg cgggcattct gcaaaactct gaagctgaag      6300
     aaacaaaatt gatagcactc ttgaagaaaa ccgatttgta cacaaaaatc taattgatgt      6360
     ttatagtaat aagttaacta tataagtatc taaagaggtg aaccagcgtt cggctgaaag      6420
     cctcttaaat aaagacaaaa aaaaaaaaaa aaaaaa                                6456
//
ID   I-79_AAe    repbase;    DNA;    INV; 5994 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-79_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5994
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1350-1350 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..1337
FT                 /product="I-79_AAe_1p"
FT                 /translation="MAGEPPAVLAGAPGDPAGSQRGGRVPGWMLNKDDLGQ
FT                 PMVLVLRCKVPDGVTDDPQLPEPFVIGLSVESAIGIKEARSVKATREGRGS
FT                 RYLLRTTSRSIVNKLTQLTELSDGTEIEIFPHPTLNTVQGIVYEPDSINTD
FT                 EQVIHKHLISQEVQAVRRIKKRVNGKLQNTPLLILAFHGTTLPDHVFFGLL
FT                 RIPVRTYYPSPLLCYNCGSYGHPRKACQKPGICLRCSQPLHLAEGEQCNNT
FT                 PHCYHCEKEHPISSRDCAKFKEEDKIIHIKVDQNISFGEARRLFNEENRRE
FT                 TIARTIQNQLKQELAVKDKLIATLQKQVADLTKKLAALTPTPRESLRPSSQ
FT                 PSPFMDNQTTSSNPVPNIPHKTTHQSRKDKTFVSPPAKRKDNRDIGTDVGA
FT                 RTRSRSGKRIFEISPTSSSANRGKRVQNLPGTSSSATTVDNGS"
FT   CDS           1198..5892
FT                 /product="I-79_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MWAPALGAEVANVYLKSLQQVPVPIVESVYRISQVRL
FT                 AVQPQWIMARKTPQNSSPNLNIDLASKTDTITVERRLSTDARLDPCKYTPG
FT                 PDHGQQFCTTLDYTNQDDKLFVAEESRVSSATPTPPKEKQKNETIQVSNPL
FT                 SADLQAPMSINWKLLALPCAVVSDSVAYDHYNNLKPVPSSSSTNPDSPSAR
FT                 LTTSTLTRDVPDISDEPLAAVDVVNFLSKASIPASLSLTVNQYTPSNSPIL
FT                 IGLKSTTTPESNNINTNNNSKPSTSSPVRGRPRRGEGERVVTSPLPNLGVD
FT                 VWGDLNEACHERLAFSPSSWNPVESSNTTFGPDSNRYQQYPRPPHSNSRPS
FT                 TPSSASDVAERFPPSSFAMQWNICGLRSHRSELQILVTKHQPVVICLQETN
FT                 VDGHKLPNKFLGNGYEFLFSKCSTHGRQGAGMAIKTGTPFQRILLKTNIQA
FT                 VAIELLAPLKITVVSIYLPPKDKEAVLLLKNLLEELPKPFLLLGDVNAHHA
FT                 AWGSRTGTGATEASRRGEKILELVVENDMIVLNNGSHTRIDPVTGNSQALD
FT                 ISMCSTSMAGKFNWKILTDSSDSDHLPILINTLDVSNEPLTRAKWIYTKAD
FT                 WKCFEELTSNTLRPGHLLTVEEFSDYIISAAAASIPKTSGRRGTKSVAWWN
FT                 EDVKSAVKQRRKRLRALRRLSDEDPQKLDALRQFQIARSKARKIVKEAKQK
FT                 CWEDFVESINPNSPASEVWSKINRLQGKKSTTTITLNLPTGLTNNGRDVSE
FT                 ALADEYESKSSNATYPDKFRRQHKSDWNAFRQTQRPHLYKKYNQDFTLEEL
FT                 LWALERKAGSSIGADNIGYPMLQRLPISSKVAMLELFNRIWDNGTFPDQWK
FT                 LGTIMPIPKPDSDRSRADGYRPIALLSCMGKVFERMVNRRLITELETNQRL
FT                 DPRQHAFRSGKGVDSHLAALESLLSFENDEHVEIVTLDISKAYDTTWKPGI
FT                 LHTLKEWKISGRMMNMLSSFLANRRFQVFANGSTSSLRKADNGVPQGSILS
FT                 VTLFLVAMQPIFKKIPSSAEILLYADDVLLVVKGNNRRLVRQSMRKTVGIV
FT                 TEWAASVGFSIAPAKSKLMHCCRQRHRKRGRAININSIPIPQVRKIKILGI
FT                 MVDSKLNFKQHLATIKKSCSSRINILRILGSRLKRSNRSTLLSAGSALIFS
FT                 KLFYGLGLTSTNTEDMEQMLGPTYNEVVRLSSGAFVSSPTTSIMAEAGCLP
FT                 FRLALTLRLAKLAVRLLEKDLLSSKYPVVSRAKDIFQQTTGYSLPNICITL
FT                 RNTDREWYTLPPRIDNFFRNSVKAGTNSRIVIPMFQDFTTNRYRHYVKSFT
FT                 DGSKDGSFTGVGVVMDEEEENYSLPDECSIFSAEAHALLTAVSKVNGNHST
FT                 IIFTDSASCIDALRGGRSKHPWIQSVERLSKDRNITFCWIPGHCGITGNER
FT                 ADSLAKSARNKHKLNTPLPSQDVKMALKRSVWSTWESEWRQVQSQLRLIKC
FT                 SPVKYPDRNNTSEQRTLTRLRIGHTRLTHSHLIDKTLPPICRFCGTQITIP
FT                 HILIDCRGYSQQRVRCEITGSLSEILAHDAKKEANILQFLKDCNIYNQI"
XX
SQ   Sequence 5994 BP; 1821 A; 1581 C; 1263 G; 1329 T; 0 other;
     aattagtgct tctgacgctc ggcctaatgg ccggcgaacc ccccgccgta ttggcggggg        60
     cccccggtga cccagctggg tctcagcgcg gtggaagagt gccgggatgg atgcttaata       120
     aggatgattt gggtcaaccc atggttttag ttctgcgatg caaagtgccc gacggtgtaa       180
     cggacgatcc tcaacttcct gaaccgtttg tcatcggcct atctgtagaa tcggcaatcg       240
     gtattaaaga agccagaagc gtaaaagcta cccgcgaagg tcgtggttca cgatacctac       300
     ttcgcactac ctccagaagt atcgttaata agctaacgca gttgactgag ctctccgatg       360
     gtacggagat agaaatattc ccacacccaa ccctaaacac ggtgcagggc atcgtatatg       420
     agccggactc aatcaatacg gacgaacaag tgatccacaa gcatctgatc tcccaagaag       480
     tacaagcagt ccgtcgcatc aaaaagcgag taaatggcaa gctccagaac accccgctgc       540
     tgatcctagc ttttcacggt acaacgcttc cagatcatgt cttctttggg ttgttgcgta       600
     ttccagtgcg gacatactac ccatctccgc tactgtgcta caactgtgga tcatacggcc       660
     acccccgaaa agcctgtcaa aagcccggca tttgcctacg ttgctcacaa ccgctccatt       720
     tagcagaagg agaacaatgc aacaacaccc cacactgtta ccattgcgaa aaagagcacc       780
     ccattagttc acgggactgc gctaaattca aagaagaaga caaaatcatc cacataaaag       840
     tggatcaaaa catctcgttt ggtgaagcta ggcgcctctt caacgaagaa aataggagag       900
     aaactattgc ccgcacgatc caaaaccagc tcaaacaaga actagcagta aaggacaaat       960
     taatagcgac actccaaaaa caagtagccg acttgactaa aaagcttgct gccctcacac      1020
     caactcctcg agaatcactg cggccaagtt ctcaacccag cccattcatg gacaaccaga      1080
     ccacttcatc aaacccagtc cccaacatcc cccacaagac aacacatcaa tcgagaaaag      1140
     ataagacatt tgtctcacca ccagctaaaa ggaaagacaa ccgcgacatc gggaccgatg      1200
     tgggcgcccg cactcggagc cgaagtggca aacgtatatt tgaaatctct ccaacaagtt      1260
     ccagtgccaa tcgtggaaag cgtgtacaga atctcccagg tacgtctagc agtgcaacca      1320
     cagtggataa tggctcgtaa aacccctcaa aactcctcac cgaatctcaa tattgacctg      1380
     gcatcgaaaa cggacacgat aacggtagaa cgacgactat ccaccgacgc aagattagac      1440
     ccctgcaaat atacccctgg acccgatcat ggacaacaat tctgcaccac gctagactat      1500
     accaaccaag atgacaagct ctttgttgct gaggaaagta gagtgtcctc agcaacccct      1560
     acacctccga aagagaagca gaaaaatgag acgattcagg tatccaaccc tctatccgcg      1620
     gacctccaag ctccaatgtc catcaattgg aaacttctag cgctaccatg cgctgtcgta      1680
     tctgattctg ttgcctacga ccactacaac aacctgaaac ctgtgccatc gtcaagttct      1740
     acaaaccctg attcgccaag tgcgaggctc accacgtcga ccctgaccag ggatgttccg      1800
     gatatttccg atgagcctct ggcggcagtc gacgtggtca attttctctc taaggcaagt      1860
     attcctgcat cactttccct aactgtgaac cagtatactc cctcgaactc tcccatcctt      1920
     ataggactta aatcaactac cacgccagag agtaacaaca tcaacacaaa caacaacagc      1980
     aaaccaagta cctccagccc agttcgcggg cgtcctcgac gaggggaggg agagcgtgta      2040
     gtaacctccc ccctcccaaa cttgggagtg gatgtctggg gggacttgaa tgaggcctgt      2100
     cacgagcgcc ttgcattctc gccttcctcc tggaatccag tcgagtcgag caacaccaca      2160
     ttcggccctg atagcaacag ataccaacag tatcccaggc caccgcattc caactctaga      2220
     ccctccaccc cttcatcggc ttcggacgtc gctgaacgat tccctccgtc ttcattcgct      2280
     atgcagtgga acatatgcgg tcttcggtcg caccgtagcg aattgcagat tttagtcacg      2340
     aaacaccaac cggttgtgat ttgtctgcaa gaaacaaacg tagatgggca caaacttccg      2400
     aacaaattcc ttggaaacgg atacgagttt ttgttcagca aatgctcaac gcatgggaga      2460
     caaggtgctg gcatggcaat taagaccgga acacctttcc aacggatctt gcttaaaacc      2520
     aatattcaag ctgtcgccat cgaacttttg gcgcccctga aaattaccgt cgtctcgatt      2580
     tacttgccac cgaaggacaa ggaagcagta ctcctactga aaaatctgtt agaagaactt      2640
     cccaaaccct tcctactatt gggtgacgtg aacgcacatc acgccgcttg gggaagtcgt      2700
     accggtacag gagctacaga agcaagtcga agaggtgaaa aaatcctcga gctcgtggtc      2760
     gaaaatgaca tgattgtatt aaacaacggt tcccatactc gaatagatcc agtaactggt      2820
     aactcgcaag cgctcgacat ctctatgtgt tccacatcta tggcaggaaa gttcaactgg      2880
     aaaattctga cggattcctc ggacagcgac catctaccga tcctaatcaa cacgctcgac      2940
     gtctcaaacg aaccactaac ccgggcaaaa tggatttata ccaaagccga ttggaaatgc      3000
     ttcgaagaac tcacaagcaa cactctacgc ccaggacact tgctgacagt ggaggaattt      3060
     tcagactata tcatttcggc ggcggcagca tccattccaa aaacttccgg aagaagggga      3120
     acgaaatctg tcgcatggtg gaacgaagac gtcaaatcag cagtgaagca aagacggaag      3180
     cggttacgtg ctctccggcg gttaagtgac gaagatcccc aaaagctcga tgcacttcga      3240
     caatttcaaa ttgcccggtc taaagctcga aaaatcgtca aagaagcaaa gcaaaaatgc      3300
     tgggaagatt tcgtcgaaag cattaatcct aatagtccag ccagcgaagt gtggagtaag      3360
     attaacagac tccaaggcaa aaaatccacc accacaatca cacttaatct accaactggc      3420
     ctcactaaca atggtaggga cgtatcggaa gctttagccg atgaatatga aagtaaatcc      3480
     tccaatgcta cttaccctga taagtttaga cggcaacata aatctgactg gaatgcgttc      3540
     aggcaaactc agcgaccgca tctctataaa aaatacaacc aagactttac tttggaggaa      3600
     ctcttatggg ccttagagcg caaagcaggt tcatcaatag gcgcagacaa cattggatac      3660
     ccaatgctgc aacggctacc aatatcatcg aaagttgcaa tgctggagct ttttaatcgt      3720
     atctgggaca acggtacatt ccccgatcag tggaagctag gaacaataat gccaattccc      3780
     aaacctgatt cggaccgtag cagagcggat ggctatagac caatagctct tctgagctgc      3840
     atgggtaaag ttttcgagag aatggtcaac cgtcggctta tcactgagct cgaaacaaac      3900
     caaagactgg acccacgtca acacgccttc cggtcgggaa aaggtgtgga ttcccacttg      3960
     gctgcactcg aatctttgct cagctttgaa aacgacgagc atgttgagat tgtgactctg      4020
     gacatatcca aggcctacga caccacctgg aaacctggca tcctccacac actgaaagaa      4080
     tggaaaatct ctggtcgaat gatgaacatg ctatccagtt tccttgcaaa cagacgtttc      4140
     caggtgttcg ccaatggatc tacatcaagc ctcagaaaag cggacaatgg cgtgccacaa      4200
     ggatctattt tgtcagttac gctgttcttg gtagccatgc agcctatttt caaaaaaatt      4260
     ccgtcgagtg ctgaaattct tttatacgct gatgatgttc ttctcgtagt gaagggaaac      4320
     aaccgtcgat tagttcgcca gagcatgagg aaaaccgtcg gaatcgtaac ggaatgggca      4380
     gccagcgtag gtttctccat tgctccagct aaatccaagc ttatgcactg ttgtcgtcaa      4440
     cgccaccgta aacgaggtcg agcgatcaat atcaacagca ttcccatccc acaagtgcgg      4500
     aaaattaaaa tcctgggaat tatggttgac tcgaaactta atttcaaaca gcacctagca      4560
     actatcaaga aaagctgtag cagtagaatc aatatcctcc gaattctagg gtctcggttg      4620
     aagagaagta acagatcaac cctactgagc gcaggttcag cactgatctt ttcaaaatta      4680
     ttttacggcc tagggctaac aagtactaac accgaggata tggagcagat gctagggcca      4740
     acatacaacg aagttgtgcg cctatcttct ggagcatttg tatctagccc cactacatct      4800
     attatggctg aagccggctg cctacctttc cgccttgcac taactctacg actagcgaaa      4860
     ttagctgtac gacttctgga gaaagatctg ttatcttcca aatacccagt ggtatcaagg      4920
     gcaaaggaca tcttccagca aacaacaggc tactccctac cgaacatttg cattactctc      4980
     agaaacaccg accgagaatg gtacaccctt cctccacgca ttgataactt ttttagaaat      5040
     agcgttaaag ctggcacgaa tagtaggatc gtgataccaa tgttccagga cttcacaaca      5100
     aatcgttacc ggcactacgt gaaatccttt actgacggct cgaaagatgg ctcctttact      5160
     ggggttgggg ttgtcatgga tgaagaagaa gaaaactatt ccctaccaga cgaatgcagc      5220
     atattctcag cagaggccca tgctctgctt actgctgtgt ccaaagtaaa tggaaatcac      5280
     agcaccatca tcttcactga ctccgccagc tgcatagatg ctctacgagg tgggcgatcc      5340
     aaacacccat ggattcaatc agtagaaaga ctatctaagg acaggaacat caccttctgt      5400
     tggatcccag gtcactgtgg tattacaggg aacgaacgag cagacagcct agctaaatca      5460
     gcgcgaaaca agcacaagct gaacactcct ctaccctctc aagacgtaaa aatggctcta      5520
     aagcgaagtg tttggtccac atgggaatct gaatggcgtc aagtccagtc tcaacttcga      5580
     ctgatcaagt gttctccagt taaatatcca gaccgtaaca atacttccga acaacggact      5640
     ctgacaaggc ttcgcatagg gcacactcgt ctcacccatt cacatctcat cgacaaaacc      5700
     ttaccgccta tatgtcgatt ttgtggaacc caaataacaa tcccacacat cctgatcgac      5760
     tgcagaggat attctcaaca acgggtcaga tgcgaaatca ccggatcact ttctgaaata      5820
     ctagcgcacg atgcaaaaaa agaagcaaac attttgcaat ttctcaaaga ttgtaatatc      5880
     tataatcaaa tctagtttta aacgatgtta tgtaattgaa gaatgaatac gactatttcg      5940
     acacgaatgc cacacgtatg gtaaagtgtc ctaaataaat attaataata ataa            5994
//
ID   I-7B_AAe    repbase;    DNA;    INV; 6629 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6629
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1358-1358 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 18 sequences with >98%
CC   identity. The consensus is ~83% identical to I-7_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           926..2572
FT                 /product="I-7B_AAe_1p"
FT                 /translation="MEPNDKGGGQSQYEISSDDESNPNRSNVVLTSIPQNI
FT                 TEMETNEVSPTLPITPQGYASRTNGSSSPIPSEDGESIESPSYEYLACAQV
FT                 PMDTSSNTRNVNQPLVLSSSSGTVKEATPRLKAYPPGSKGPFLVFFRPKGK
FT                 PLNKLQIEKDLAKSFRGIESVDAPSRDKLRVTVSDREQANKIVAYKLFSME
FT                 YRVYLPSREIEIAGVVTEPFLSCADIKSGVGGFKNRAVPPVAILDARQMNQ
FT                 VAPDGTKQPSNSFCVTFSGSALPDYLVIGKLRLPVRLYKPTVMHCDKCQQI
FT                 GHTSPFCCNKPRCAKCGELHVQGACSSDPKCSCCGQAPHELTACPKFIERE
FT                 KHQIRSLKQRSKQSYAEMLKKIAPTVVPPAHSIASNNLFTTLPDDDQGSDS
FT                 EAGEEYNVIQTGTKRKRAIARRHRQQPSHVPVAQQNSRLSLKKSRSDGNTT
FT                 KVTPPGFKFKPGDFPSLPGSSKTPDVPVFRPESQQTNIFTSRQEHVETSDK
FT                 ITLSGIVEIIFEVMEVSPAIRNLISKALSFIKPLLKRLASKWPILESFISF
FT                 DG"
FT   CDS           2568..6242
FT                 /product="I-7B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDNTSNEVGDMVEILQWNCRSISKNIEAFKYLVHSTR
FT                 CDVFALSETWLTSDKNLSFHDFNIIRQDRGDGYGGVLLGINKLHSFYRIDF
FT                 PPMTGTEVVACQVTIRGKSFSIASTYLPPSARISRRELTAICCAMPAPRLI
FT                 VGDFNSHGTAWGSMYDDNRSTLIYDLCDDFNLTILNTGEATRIKPPAPPSI
FT                 LDLSICSNSLSLDCTWKVIQDPHGSDHLPIKISISNDSCQARQIDVAYDLT
FT                 KHIDWGKYAEAISDGEQSVDALPPLEEYQFLSELIINSAIEAQRRPIPGAK
FT                 VRRRPPTPWWDDECTAVYREKSVAFKEYRKRGSRENYERYTSLERKFGSLV
FT                 KAKKKGYWRNFVNGLSRETSMTTLWTVGRRMRNATAVNEDKEHSSRWIFQF
FT                 AKKVCPDSVPVHGKVRVNSTERNEVDRPFSMLEFSLALLSCNNSAPGMDRI
FT                 KFNLLKNLPDVAKRRLLNLFNQFLERNIVPDDWRQVRVIAIQKPGKPASDY
FT                 NSYRPIAMLSCLRKLLEKMILHRLDKWVESNGFLSDTQFGFRRGKGTSDCL
FT                 ALLSTEIQLAYAQKEQMGSVFLDIKGAFDSVCIDVLSDQLHDCGLSPLINS
FT                 YLYNLLSEKRMSFSHGTSTASRISYMGLPQGSCLSPLLYNFYVRDIDDCLV
FT                 GNCSLRQLADDAVVSVTGPGADDLQRPLQDTLDNLSTWALKLGIEFSPEKT
FT                 ESVVFSKKHVPAQLGLQIMGKELTQGLSHMYLGVWFDSKCTWGKHIKYLYQ
FT                 KCQQRINFMRTLTGTWWGAHPDDLIMLYRTTILSVLEYGSFCFQSAAKTHI
FT                 LKLERIQYRCLRIALGCMNSTHTMSLEVLAGVLPLSDRFAELSLRFLIRCE
FT                 VLNPLVIENFEKLIERNPQTKFMTLYYWYMSLEINPSLNAPNRSCFPNLSN
FT                 STVGFDLTMRRETHGIPDLLRSEXIPLIFANKFGQVSSDRTFYTDGSKTND
FT                 STGFGVYNEFHSAAHKLQNPCSVYVAELAAIHYALERIASLPSDRYFIFTD
FT                 SLSSIEAIRSMRPVKHSPYFLXEIRSKLSALSNHTITLVWVPSHCSIPGNE
FT                 KADALAKVGAMEGDIYDRQIAFEEFFTIARQQTLLSWQQKWDKGDLGRWLH
FT                 SILPQVSKKSWFKGMNMSRDFIKIMCRLMSNHYSLGSHLYRIGLADNNRCG
FT                 CGAGYQDINHVVWYCPEYGIARSNLCTSLRARGKPDKEDIRDVLGRLDFDY
FT                 MLLVYKFLKQIDVFV"
XX
SQ   Sequence 6629 BP; 1795 A; 1566 C; 1403 G; 1862 T; 3 other;
     attcctttcc gaacgctagc cagtatcggt tgtgttttgc gcagtttctc tatagttcga        60
     agcaaattga tttcactgcg aagtgaaccg ttttttctcc tcgcgttgcg tggtttttta       120
     cggtgttaca atttccagtt gaaataaccg atcatccgcg tttcggatca cggaagcagc       180
     cagccttagc ctagcctatt ggttggactg tccagcttta ccgaaggcca tcccgtcgca       240
     gcattgtgtc atcatcatat ttgccatcat catcaccatt atcatcatca gcaacagcag       300
     cacagaagag gcctcaaacc atcaagttgc tgtgttgcct accgggtgcc tatcgtttcg       360
     aacagcaagt cccggacaat acatccatcg gcggatctgc acgtgtttac gaaaaacaac       420
     agcagtgcag agaagccagt cggtcacatt ggatgaatag gtatttattt cgttctgccg       480
     atctctttcg tctgcccgcc tatcttcctt ctcgacgcta gccggtgatc aactcaccta       540
     ccagtgtata gttgcctttt tgcgttcatt ttcttattga actttttttt tttgtaaata       600
     tttttttttc ttccctcatt ttttttggtg attaattcac ctaaaggtaa atttgtctac       660
     ctctgctatt actattagta ttattattat tatatttttt tttttgttca attttttttt       720
     tttttttttt ttgttttgag gtgattgatt cacctgaagt gcgaacgaac ttaaccgcac       780
     tttaaatttt acaataagta gttctttatt tcgttattat tattatttta agtgtaaata       840
     ttgttcaaaa tctatctgct gggtgctaaa aattgattgc acatacgatt ttgaattctt       900
     cctggtgggg taatctcacc ccacaatgga accaaacgat aaaggcgggg gtcagtcgca       960
     atacgaaatt tcctcggatg atgaatcaaa tccaaaccgg tcaaatgtcg ttctaacatc      1020
     gattccgcag aatatcacgg aaatggagac caacgaagtc tcacccaccc tccctatcac      1080
     cccgcaagga tatgcatccc gtacaaacgg ttcatctagc cctatcccct cggaagatgg      1140
     tgaatcgatt gaatctccgt catatgaata tttggcctgt gctcaagtgc cgatggatac      1200
     ctcctccaat acgcgtaatg taaaccaacc cctggtgctc tcctcctctt ctggtactgt      1260
     taaggaagcg accccccgcc taaaagccta tccacccgga tctaagggtc cctttctggt      1320
     tttctttcgg cccaaaggca aaccattgaa caaattgcaa atagaaaaag atctggcaaa      1380
     gtcgtttcgg ggcatcgaat cagtagatgc tcctagtcgt gacaaattgc gtgtcacggt      1440
     tagtgatcgt gaacaggcca ataagattgt tgcctacaaa ctcttctcga tggagtacag      1500
     agtatacctt ccaagtcgag aaattgagat cgcaggagtg gtcaccgaac cgtttttgag      1560
     ttgcgctgac atcaaatctg gtgttggagg atttaaaaac cgtgccgtcc ctccggtcgc      1620
     catacttgat gccagacaaa tgaaccaggt ggctcctgat ggcacaaaac agccgtcgaa      1680
     ttcgttttgt gtaactttct ctggatcggc gcttccggac tacttggtga tcgggaaact      1740
     tcggttgccc gttcgcctct ataaaccgac ggttatgcac tgtgataagt gccagcaaat      1800
     tggtcataca tcacctttct gctgtaacaa gccacggtgc gcaaaatgcg gtgagctaca      1860
     tgtgcagggt gcctgcagtt ctgatcccaa gtgttcatgc tgtggtcaag ctccacatga      1920
     gctcactgca tgcccgaagt ttatagagcg ggagaaacat cagatacgct ctctaaaaca      1980
     acggtcaaag caatcttacg cagaaatgct aaagaagatc gcaccgactg ttgttccacc      2040
     agcccactct atcgctagta acaacctctt tactaccctg cctgatgatg accaaggctc      2100
     tgactctgag gcgggtgaag aatataatgt tatacaaaca ggaacaaagc gaaagcgagc      2160
     tatagcacga aggcaccgtc agcagccttc tcatgttcct gttgctcaac agaattctcg      2220
     actctccctg aaaaagtcaa gaagtgacgg aaataccact aaagttaccc ccccaggttt      2280
     taaattcaaa cctggagatt tcccttcact tccgggatca tctaaaaccc cagatgtccc      2340
     agtttttcgc ccggaaagcc aacaaacaaa catcttcaca tctcgacaag aacatgtcga      2400
     aacttccgac aaaataacgc tttctgggat tgtggaaatc atcttcgaag taatggaagt      2460
     ctctcccgca ataagaaacc ttattagtaa ggcactttct ttcataaaac ctcttctgaa      2520
     gcgactggct tcaaaatggc cgattcttga atcgttcata tctttcgatg gataatacat      2580
     ccaatgaggt cggggatatg gtcgaaatcc tacagtggaa ttgcagaagc atttctaaaa      2640
     atattgaagc gtttaagtat ttagttcaca gcacacgctg tgacgtattt gctctcagtg      2700
     aaacatggct aacttctgat aagaatctct ctttccacga tttcaacatt attcgccaag      2760
     atcgtgggga tggttatgga ggggtattat tggggatcaa caagctccac tccttttata      2820
     gaattgattt tcccccgatg acaggcactg aagtagttgc atgtcaggtt actatacgag      2880
     gaaaaagctt tagcatagca agtacgtacc taccgcctag tgccaggata tctcgcagag      2940
     agcttacagc catctgctgc gctatgccag ccccacggtt gatcgtaggt gatttcaatt      3000
     cacacggtac agcctggggg tcaatgtacg acgacaaccg ttcaaccttg atatacgacc      3060
     tatgcgacga cttcaacttg actattttaa acactgggga agcaacacgt atcaaacctc      3120
     cagctcctcc aagtatttta gacctctcaa tctgttcgaa ctcattatca ttggattgca      3180
     cgtggaaagt aattcaagat ccccatggta gtgatcacct gcctatcaaa atttcaattt      3240
     ccaatgattc gtgtcaggct cgccagatcg acgtagcata cgacctcacc aagcacattg      3300
     actggggaaa atatgctgaa gcgatctccg atggcgagca gtcggtcgat gctcttcctc      3360
     cgttggaaga gtatcagttc ttatccgagt taattatcaa cagtgctatt gaagcacagc      3420
     gtcgaccaat accgggagcg aaagttcgaa gacggccacc caccccttgg tgggatgatg      3480
     agtgcaccgc agtatatcgg gaaaagtccg tcgcgtttaa agaataccgg aaacgcggtt      3540
     ctcgtgaaaa ctatgagcgc tatacctctc ttgaacgcaa gtttggtagc ctcgtcaaag      3600
     cgaagaaaaa aggatattgg cgcaatttcg taaacgggct ttctagggaa acttccatga      3660
     caacattatg gaccgtcggt agaagaatgc ggaacgcgac agcggtaaat gaagacaaag      3720
     aacactcttc tcggtggatc ttccagttcg ccaagaaagt gtgtcctgat tccgttccag      3780
     tacacggaaa ggttcgcgtt aactcgaccg aaagaaacga agttgataga cccttttcga      3840
     tgctagaatt ctcacttgct ctcctttcat gtaacaattc tgccccagga atggatagga      3900
     ttaagttcaa cttgctcaaa aacctcccag acgtcgcgaa gaggcgcttg ttgaacttat      3960
     tcaatcagtt tctggaacgc aacattgttc cggatgattg gagacaagtg agagtgattg      4020
     ccatccaaaa gcccggaaaa cccgcgtcgg attacaactc gtaccgccct atcgcgatgc      4080
     tgtcctgttt acgcaagctg ttagagaaga tgattcttca tcggcttgac aaatgggttg      4140
     aatcgaacgg ttttctatca gatacgcaat ttggtttccg cagaggcaaa ggaacgagcg      4200
     actgtcttgc gcttctttcg acagaaatcc aactggccta tgctcaaaag gagcaaatgg      4260
     gatcggtttt tttggacatt aagggagctt ttgattcagt atgcatagat gtcctttcag      4320
     accaactcca cgactgtggg ctttcaccat taatcaacag ctatttgtac aatttgttgt      4380
     ctgagaaacg tatgagcttt tctcacggta cctcaacagc ttcacgaatt agttacatgg      4440
     gtctccccca gggctcatgc ttaagccccc ttctttacaa tttttatgtc agagacattg      4500
     atgattgtct cgtgggaaat tgctcgctaa gacagcttgc agatgatgcc gttgtttccg      4560
     taacaggacc aggggcggat gatttgcaaa gaccactgca agatactcta gacaatttgt      4620
     ctacttgggc tttaaagctg ggtatcgaat tctctccgga gaaaactgag tcggttgtct      4680
     tttctaagaa gcatgtccca gcacagttgg ggcttcaaat catgggtaag gaactaactc      4740
     agggtctttc acatatgtat cttggggtct ggttcgattc caaatgcact tggggaaagc      4800
     acattaagta tctgtatcag aaatgccaac aacgaatcaa cttcatgcgc acactgaccg      4860
     gaacatggtg gggagcccac ccggacgatc tgataatgtt ataccgcact acaatcctct      4920
     cggtccttga atacggtagc ttttgtttcc aatccgccgc gaaaacacac attctgaagc      4980
     ttgagcgtat ccagtatcgc tgtcttcgaa tcgcgttagg ctgtatgaac tcgactcata      5040
     caatgagttt agaggtatta gcaggagtcc ttcctttatc agatcgtttc gcggaattgt      5100
     ccctccggtt cctcatccgc tgtgaggtat taaacccatt ggttattgaa aattttgaaa      5160
     agctaatcga acgaaatcct caaacaaaat tcatgacact gtactactgg tacatgagtc      5220
     tggagattaa cccttctttg aatgctccca atcgtagttg cttcccaaat ctctccaact      5280
     ccactgtagg ttttgatctg accatgaggc gagaaaccca tggaattcca gatctgctcc      5340
     gatcggagkt cataccacta atttttgcaa acaagttcgg ccaggtcagc agcgacagaa      5400
     cgttttatac tgacgggtca aaaacaaatg attccactgg atttggtgta tacaacgaat      5460
     ttcatagcgc cgcccacaaa cttcagaacc cttgttcagt atacgtcgca gaattagcgg      5520
     ctatacacta tgcattagag cgaattgcct ctcttccctc tgatcgatat ttcattttta      5580
     cggatagtct cagctccatc gaggctatac gttcaatgag gccggtaaag cactcmccgt      5640
     attttctcmg tgaaatacga tctaaattga gtgctttgtc gaatcatacc atcaccttgg      5700
     tttgggtccc ctcgcattgc tcgattccgg gcaatgagaa agcggacgca ctcgccaagg      5760
     tgggcgctat ggaaggcgat atttatgatc gacaaatcgc ctttgaagaa tttttcacaa      5820
     ttgctcgtca gcagaccttg ctcagttggc aacaaaaatg ggataaaggg gatttgggca      5880
     ggtggttaca ttccattctc ccgcaggtgt caaagaagtc gtggtttaaa gggatgaaca      5940
     tgagtcgcga ctttatcaag ataatgtgtc ggctgatgtc caaccactac tcgttaggct      6000
     cgcatctcta tcgaataggg ctcgcagaca ataatcgatg tggttgtgga gctggttacc      6060
     aagacatcaa ccatgttgtc tggtactgcc ccgaatacgg aattgccaga tcaaatctat      6120
     gtacatctct cagggcccga ggaaaaccag acaaggaaga cattagagat gtgttgggta      6180
     gactggactt tgactacatg ttacttgttt acaagttctt gaagcaaatc gacgtttttg      6240
     tttgataata tgcttttttg ttccgcttgt cctcctcgta taccccttcc cgttttttgg      6300
     atgtccacct tgtttccctc gaaacccgtt tgtttgtacc gttacaggtt gtcgtcatgt      6360
     ccactctgcg ttgaccagca gcaataacgc ctcaacaata tgctgctgtt gaagatcaac      6420
     gagtaaaccc aaaattccca tcccttccaa aaatgattgt actccttaac ctcgaccaaa      6480
     ccgcgagttt tacggttccc caaaactaac ctagttctat aagaagcaaa tatgattttg      6540
     taaaataaat cctttcaatc cggctccgta atgcctaaga gcgcttgagc ctgctaaata      6600
     aatgattagg taaaaaaaaa aaaaaaaaa                                        6629
//
ID   I-7C_AAe    repbase;    DNA;    INV; 6501 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6501
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1359-1359 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >96%
CC   identity. The consensus is ~87% identical to I-7B_AAe and
CC   ~82% identical to I-7_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           1075..2448
FT                 /product="I-7C_AAe_1p"
FT                 /translation="METSSANSSSAHQRQALPSTPGKANPRQKAYPPGSKG
FT                 PFLVFFRPKGKPLNKLQIEKDLAKSFRGIESVDAPSRDKLRITVSDREQAN
FT                 RIASYELFSMEYRVYIPSRDIEIAGVVTEPYLSCADIKAGAGGFKNRDVPP
FT                 VTILDVRQMNQVAPDGTKQPSNSFCVTFSGSALPDYLVIGKLRLPVRLYKP
FT                 TVMHCDKCQQIGHTTPFCCNKPRCAKCGEQHVEGACSTEPKCTCCGQAPHE
FT                 LTTCPRYIEREKHQIRSLQQRSKRSYAEMLKKIAPAVAPPAQPIASNNIFT
FT                 SLADDEQGSDSEEGEEYTIVQTGSKRKRAVARQLRHRQQISQNAQQELRPS
FT                 LKKSRSGENAIKANPPGFRLVPGDFPSLPGSSKTPDIPVFRPESQHANIPS
FT                 ARQESVETSDKLTLSGIVEIIFKILEVSPATRNLINMALPFVKPLLKRLFS
FT                 QWPILDSFISLDG"
FT   CDS           2444..6118
FT                 /product="I-7C_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDNSTNEVGDMIEILQWNCRSILKNIDAFKFLVHSTR
FT                 CDIFALSETWLTSDKDISFHDFNIIRQDRGDGYGGVLLGIRKLHSFYRVDF
FT                 PPMTGTEVVALQVTIRGKSFSIASVYLPPSARVSRRDLAAICCAMPAPRLV
FT                 VGDFNSHGTAWGSMYDDNRSSLIYDLCDDFNLTILNTGEATRVKPPAPPSM
FT                 LDLSICSNSLSLDCTWKVIQDPHGSDHLPIKISITNDSCQARQIDLAYDLT
FT                 KHIDWGKYAELIIDGVQSVELLPPLEEYQFLSELIVNSALQAQRRPIPGSK
FT                 VRRRPPTPWWDEECTAVYREKSAAFKXYRKRGSRENYERYTSLERKFGSLV
FT                 KAKKRGYWRNFVNGLSRETSMTALWSAGRRMRNASXVNEDKEHSSRWIFQF
FT                 AKKVCPDSVPVYRTVRACLPERNEVDRPFSMLEFSLALLSCNNSAPGMDRI
FT                 KFNLLKNLPDVAKRRLLDLYNQFLEGNIVPDDWRQVRVIAIQKPGKPASDY
FT                 NSYRPIAMLQCLRKLLEKMILYRLDKWVEANGFLSDTQFGFRRGKGTNDCL
FT                 ALLSTEIQLAYAQKEQMGSVFLDIKGAFDSVCIDVLSDKLHDCGLSLLLNN
FT                 YLYNLLSEKRMSFSHGTSTTSRISYMGLPQGSCLSPLLYNFYVRDIDDCLV
FT                 ENCSLRQLADDAVVSVTGPGADDLQRPLQDTLDNLSTWALKLGIEFSPEKT
FT                 ELVVFSKKRDPAKVELQLMGKELAQGISHMYLGVWFDSKCTWGKHIKYLYQ
FT                 KCQQRINFMRTLTGTWWGAHPEDLIKLYRTTILSVLEYGSFCFQSAAKTHI
FT                 LKLERIQYRCLRIALGCMSSTHTMSLEVLAGVLPLSDRFAELSLRYLIRCE
FT                 VLNPLVIGNFEKLIERNPQTKFMTLYYWYMSLEVNPSLNAPNRSCFPDFSS
FT                 STVGFDLSMKQEIHGIPDHLRSEYIPLIFANKFGHVSSDRTFYTDGSKTND
FT                 STGFGVYNEFHSAAHKLQNPCSVYVAELAAIHYALERIASLPSDRYFIFTD
FT                 SLSSIEAIRSMRPVKHSSYFLREIRSSLSALSNHTITLVWVPSHCSIPGNE
FT                 KADSLAKVGAMEGDIYDRQIAFNEFFAIARQQTLLSWQQKWDNGDLGRWLH
FT                 SILPRVSRKPWYKGLDMSRDFIKVMCRLMSNHYSLGSHLYRIGLSDSNRCG
FT                 CGAGYRDINHVVWYCSEYGIARSDLCESLRARGKPDKEDIRDVLGRLDFDY
FT                 MMLIYKFLKQNDVIV"
XX
SQ   Sequence 6501 BP; 1758 A; 1515 C; 1423 G; 1798 T; 7 other;
     cattcctcgt cgtgcgctct atcgagacgg tcgactttat tccgtgctct gaaccattcg        60
     ttatttttcg gtagagtttt ttctccacac gcaagttttt agatagtgga gtttttatat       120
     cattcgctca tcctaccagt gaacgaaaat cggtatatcg cgcaacacgt ggaagcagct       180
     agtcctggca tagtcctacg gctagactgt gcgtcgaagc atcatcgaag ggcaaaccgg       240
     gggtcccccc ttcccgtcat ctaccatcgt gcccatcgca gtcaaacatc agcgcgcttt       300
     catcgtagta cccagctcca gcagatcgaa cgagccaagg tcatcacacg agaaaacgcc       360
     tgtttgacta cctacagtaa gcagaggaac aagctgtagc acgcggtgtg tggttaggta       420
     aattgttcct tttcttggtt gcattgtttg ccgtcggtcg gacaatttca tctacgttga       480
     tcgaatagtt acacagtggt ctcgaagtgt tttttccctt gaaatttttt tttttttttt       540
     gctgaattat tatttttttt ttaataattt gatttttttt tcgtgttgca ttaatattga       600
     ttaactcaca tagcagtgca aaatcaatca aattttcact tttttttttg ggttattgcc       660
     attgttattt tcctcgaagc gtaatacaac gctacattct gtgagctaaa ccaatagaat       720
     agaataatat tctgtgagct aaattaatta gaagctcact tgtaaatatt agttaggttt       780
     tagatttttt ccttgtgtct aatattacaa cacaatggat ccaaatgatg aaggcggggg       840
     cgattcgcag tttctgatat cctccgaaga cgagtcaaac aataattttg ttgaaaatgt       900
     ctcccctatg gagaccggcg tagttacgaa acagggtctt ctcccctaca aggagcgcct       960
     gaattacaaa ctccagtgag gttgcctgaa atcgaaaast ccattaccca tctttctgag      1020
     gatgaatcta ttgaatcacc atcgtacgaa acattggtca gtccacaagt accmatggaa      1080
     acatcmtctg cgaattcttc ctctgcacat caacggcaag cgctcccctc cacccctggt      1140
     aaagcgaacc cccgccagaa agcttacccg cccggatcta agggtccctt tctggttttt      1200
     ttccggccca aaggtaaacc gttaaacaaa ttgcaaatcg aaaaagattt ggcaaagtcg      1260
     tttcggggca tcgagtctgt agatgcaccc agccgtgaca agctccgaat cactgtcagt      1320
     gatcgtgaac aggcaaatag aattgcttcc tacgagctct tctcgatgga gtacagagta      1380
     tacataccga gtcgagacat tgagatcgca ggggttgtca ccgaaccgta tttgagttgc      1440
     gctgacatca aagctggtgc tggagggttt aaaaaccgtg atgttccccc agtcactatc      1500
     cttgatgtca gacaaatgaa tcaggtggct cctgatggca caaaacagcc ctcaaattcg      1560
     ttttgcgtca cattctctgg atcggcgctt ccggactact tggtgatcgg gaaacttcgg      1620
     ttacccgttc gcctctataa acctacggtc atgcactgtg ataagtgcca acagattggt      1680
     cataccacac ctttctgttg taacaaacca cgatgcgcta aatgcggtga gcaacatgtt      1740
     gagggtgcct gcagtacaga acctaagtgt acatgctgtg gtcaagctcc acatgagctc      1800
     accacatgtc ctaggtatat agagagggag aaacatcaaa ttcgatctct acagcaacgg      1860
     tcgaagcgtt cttacgcaga aatgctgaag aagatcgccc cagctgttgc tccgccagcc      1920
     caaccaatag ctagcaacaa tatcttcacc tccctagctg acgatgagca aggttctgac      1980
     tctgaggagg gtgaagagta tactattgtg caaacaggat caaagagaaa gcgagctgtt      2040
     gctagacagc tgcgacatcg tcagcaaatt tctcaaaacg cacagcagga actccgaccc      2100
     tccctgaaaa agtcaagaag tggcgaaaat gctattaaag caaatccacc aggtttcaga      2160
     cttgtccctg gagattttcc gtcacttccg ggatcatcta aaaccccaga tatcccagtt      2220
     tttcgcccag aaagccaaca cgcaaatatt ccttcggctc gacaggaaag tgtcgaaact      2280
     tccgacaaac taacactttc tgggattgtg gaaatcatct tcaaaatatt ggaagtttct      2340
     cccgcaacaa gaaacctcat taacatggct cttcctttcg tgaaacctct tctgaaacgt      2400
     ctgttttcac aatggccgat ccttgattcg ttcatatctc tcgatggata attcaaccaa      2460
     cgaggtcggg gatatgatcg aaatcctaca gtggaattgt agaagcattc ttaaaaatat      2520
     tgatgcgttt aaatttttag tccacagcac gcgctgtgac atattcgccc ttagtgaaac      2580
     atggctcact tctgataaag atatttcttt ccacgatttt aacattatcc gtcaggatcg      2640
     aggggacggt tatggagggg tgttattggg gatcagaaaa ctccactcct tttatagagt      2700
     tgacttcccc ccgatgactg gcaccgaagt agtcgcattg caggtcacga tacgaggcaa      2760
     aagctttagc atagcaagtg tgtacctgcc gccgagcgcc agggtatctc gcagggacct      2820
     tgcagccatc tgctgcgcta tgccggctcc acggttagtc gttggcgatt ttaattcgca      2880
     cggtacagcc tgggggtcaa tgtatgacga taaccgttcg tccttgatat acgacttgtg      2940
     cgacgacttc aacttgacaa ttttaaacac tggggaagca acacgagtaa aacctccagc      3000
     tccaccaagc atgttagacc tctcaatctg ttcgaattcg ctatcattgg attgcacgtg      3060
     gaaagtgatt caagatcccc atggtagtga tcacctgcct atcaaaattt ctatcaccaa      3120
     tgattcgtgt caggcccgcc agatcgactt agcgtatgac ctcacgaaac atattgactg      3180
     gggaaagtac gctgagttga tcatcgatgg cgtgcagtcg gtcgagttac ttcctccgtt      3240
     ggaagagtat cagttcctat ccgaattaat cgtcaacagt gctcttcaag cacagcgtcg      3300
     accaataccg ggatcgaaag ttcgacgtcg gccacccacc ccgtggtggg atgaggagtg      3360
     caccgcwgta tatcgggaaa aatccgccgc gttcaaagwa taccggaaac gcggttctcg      3420
     kgaaaactac gagcgctata cctctcttga acgcaagttt ggtagccttg tcaaagcgaa      3480
     gaaacgagga tattggcgaa atttcgtaaa cggtctttcg agggaaacgt cgatgacagc      3540
     attatggtcc gccgggagaa gaatgcgcaa cgcgtcgwcg gtaaatgaag ataaagaaca      3600
     ctcttctcgg tggatcttcc agttcgctaa gaaagtgtgt cctgactccg ttcccgtgta      3660
     caggacggtt cgcgcttgtt tgccagagag aaacgaagtt gatagaccct tttcgatgct      3720
     tgagttctca cttgctctcc tttcatgtaa caactccgcc ccaggaatgg ataggattaa      3780
     gttcaacctg ctcaaaaacc tcccagacgt cgcgaagagg cgcttgttgg acttatacaa      3840
     tcagtttctt gaaggcaaca ttgttccgga tgattggaga caagtgagag taattgccat      3900
     ccaaaagccc ggaaaacccg cgtcggatta caactcgtac cgccctatcg cgatgctgca      3960
     gtgcttacgc aagctgttag agaagatgat tctttatcgg cttgacaaat gggttgaagc      4020
     gaacggcttt ctctcagata cgcaatttgg tttccgcaga ggcaaaggaa cgaacgactg      4080
     tcttgcgtta ctttcaacag aaatccaact agcctatgct caaaaggagc aaatgggctc      4140
     agtatttttg gacattaagg gggcttttga ttcagtatgc atagatgtcc tttcagacaa      4200
     actccacgat tgtggacttt cattattatt aaacaactac ttgtataatt tgttgtctga      4260
     gaaacgtatg agcttttctc acggtacctc aacaacttca cgaataagtt acatgggtct      4320
     cccccagggc tcatgtttaa gtccccttct ttacaatttc tatgtcagag acattgatga      4380
     ttgtctcgtg gaaaattgct cgctaagaca gcttgcggat gatgccgttg tttctgtaac      4440
     aggaccaggg gcggatgatt tgcaaagacc actgcaagat actctagaca atttgtctac      4500
     ttgggccttg aagctgggta tcgaattctc tccggagaaa actgagttgg ttgtcttttc      4560
     taagaagcgt gatcctgcaa aggtagagct tcaactcatg ggtaaggagc ttgctcaggg      4620
     tatttcacac atgtatctag gggtctggtt cgactctaaa tgcacctggg gaaagcacat      4680
     caaatatttg tatcagaaat gccagcaacg aatcaacttc atgcgtaccc tcactggaac      4740
     atggtgggga gcccacccgg aagatctgat aaagctatat cgaacaacga ttctgtcggt      4800
     cctcgaatac ggtagctttt gttttcaatc cgccgcgaaa acacacatcc tgaagctgga      4860
     acgtatccag tatcgttgtc ttcggatcgc gctaggatgc atgtcctcaa ctcatacgat      4920
     gagtttagaa gttttagcag gagtactgcc tttatcagat cgtttcgcgg aattatcgct      4980
     acgctacctc atccgatgtg aggtgttaaa tccattggtg attggaaatt ttgaaaagct      5040
     aatcgaacga aatcctcaaa caaaatttat gacactgtac tactggtaca tgagtctgga      5100
     ggttaaccct tcattgaatg ctccaaatcg tagttgcttc ccagacttct ccagttctac      5160
     tgtaggtttt gatctgtcca tgaagcaaga aatccatgga attccagatc atctccgatc      5220
     ggagtatatt ccactaattt ttgcaaacaa gttcggtcat gtcagcagcg acagaacgtt      5280
     ttacactgat gggtcaaaaa caaatgattc cactggattt ggtgtttata acgaatttca      5340
     tagtgccgcc cataaacttc aaaacccatg ctcagtatac gtcgcagaat tagcggctat      5400
     acattatgca ttagagcgaa ttgcctctct tccctctgat cgatatttca tttttacgga      5460
     tagcctcagc tccattgagg ctatacgttc aatgaggccg gtaaagcact cctcgtattt      5520
     ccttcgcgaa atacgatctt cattgagtgc tttatcgaat cacaccatca ccttggtatg      5580
     ggtcccttca cattgttcga taccgggcaa tgagaaagca gactcactcg ccaaggtggg      5640
     cgctatggaa ggcgatattt atgaccgtca aatcgccttc aatgaatttt ttgcaattgc      5700
     tcgtcagcaa accctgctca gttggcaaca aaaatgggac aatggtgact tgggtaggtg      5760
     gttgcattcc attctccctc gggtgtccag gaagccgtgg tataaagggt tagacatgag      5820
     tcgagacttt atcaaggtaa tgtgtcggct gatgtccaac cactactctt tgggatcgca      5880
     cctctatcga atagggctct cagacagtaa ccgttgcggt tgtggtgcag gatacagaga      5940
     catcaatcac gtggtgtggt actgttccga atacggcatt gccagatccg atttatgtga      6000
     atccctcagg gcccgaggga aaccagataa ggaagacatt agagatgttc tgggtaggct      6060
     ggatttcgat tacatgatgc ttatttacaa atttttgaag caaaatgatg tcattgtttg      6120
     atttcccatt ctcgctgtcc agtccaacta gtcctccttt tggtcttcgt ctgtccacct      6180
     tgtcccctcg aaatacgttt gtttgtaccg ttacaggttg tcgtcatgtc cactctacgg      6240
     ttgacctgca gcaacaacga tactcactac ataacactgc tgaacgtcaa catgtaaacc      6300
     ttaaacccta tcctctcctt catatttttt gttatcctta acctcggcca aaccgcgagt      6360
     tttacggttc cccaaaacta atatagatta ttaagaagca attatgaatt tgtaaaaaaa      6420
     aaaatcaatt gaattcggct ccgttatgcc tagtggcgct tgagcctgtt aaataaacgt      6480
     ttaagtaaaa aaaaaaaaaa a                                                6501
//
ID   I-7D_AAe    repbase;    DNA;    INV; 6584 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7D_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6584
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1360-1360 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. The consensus is 80-82% identical to I-7_AAe,
CC   I-7B_AAe and I-7C_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           922..2556
FT                 /product="I-7D_AAe_1p"
FT                 /translation="MEPNDTGGGTPEYLVSSDDELVLGQMNKILKTQHSEA
FT                 METIDDGTPSPPLSPSAVPPVHSGTALSGDVTVNLSVHDSPHSSQKQTVTN
FT                 SGLLGSSSQSHAFSPSGSSSNPAPPRHKAYPPGSKGPFLVFFRPKANGKPL
FT                 NKLQIERDLAKSFRGILEIDSPSRDKLRVTVSDRDQANKIAAFELFLMEYR
FT                 VYIPSREVECYGVVTEHNLTRADIMSGAGGFKNRAVPLAPVLDANQMNKVL
FT                 PDGSKQPSNSFRVTFSGSALPSVLVIGRLRLPVRLYVPTVMHCEKCRQLGH
FT                 TAPYCSNKPRCSKCGEQHAEGSCNMEPKCTSCGQAPHELSACPKYIEREKH
FT                 TINSLKQRSRRSYADMLKKIAPTVAPSAHTFQSNNIFASLPDNDQCSDSED
FT                 GEEYTIIETGTKRKRAVTKRRLKQQASQNVPVDQNASSKPLTKSRNGGITK
FT                 KGSPPGFKFSAGEFPSLPGTSKTPVVPVFCPEEQPIRQQEQNNASGKLTLS
FT                 GIVDFIFEMFQFSPETRNLLNMALSLVKPFLKQIASKWPILDSFVSFDG"
FT   CDS           2552..6232
FT                 /product="I-7D_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANMVNEVGDMIEVLQWNCRSLMKNMEAFKFLVHSTR
FT                 CDIFALCETWLTSDKNISFHDFNIIRLDRGDGYGGVLLGISKLHSFYRIDF
FT                 PSMTGIEVVACHITARGKSLSIASVYIPPNARVSRRDLAAICEAMPAPWLV
FT                 LGDFNSHGTAWGSPRDDNRATLIYDLCDYFNLTILNTGEATRIKPPDPPSM
FT                 LDLSICSNSLSLDCMWKVIQDPHGSDHLPIKISVTNNSCRTHQIDVAYDLT
FT                 KHIDWGKYAEAISVGEQSVEILPPLEEYQFLSALIINSALQAQRKPVPGSS
FT                 VRRRPPTPWWDGECTGVYRERSDAFKEYRKRGTRDNYDRYCSLDRKFKSLV
FT                 KAKKRGYWRNFVNGLSRETSMRTLWTVGRRMRNAVSVNEDRESSSRWIFDF
FT                 AKKVCPDSVQVQTITRDYPDERNEMDSTFSMAEFSLALLSCNNSAPGMDRI
FT                 KFNLLKNLPDVAKRRLLNLFNAFLESNIVPDDWRQVRVIAIQKPGKPASDY
FT                 NSYRPIAMLSCLRKLLEKMILFRLDKWVESNGLLSDTQFGFRRGKGTSDCL
FT                 ALLSTEIQLAYAQKEQMGSVFLDIKGAFDAVCVDVLSDKLHECGLSSILNN
FT                 YLYNLLSEKHMFFSHGNSTTLRISYMGLPQGSCLSPLLYNFYVRDIDDCLM
FT                 RNCSLRQLADDAVVSVTGPEADDLQGPLQDTLDNLSAWAVKLGIEFSPEKT
FT                 ELVVFSRKRNPADLELQFMGKELSQGLSHMYLGVWFDSKCTWGKQIRYLYQ
FT                 KCQQRINFMRTLTGTWWGAHPDDLIKLYRTTILSVLEYGSFCFQSAAKTHI
FT                 LKLQRIQYRCLRIALGCMNSTHTMSLELLAGILPLSDRFVELSLRFLIRCE
FT                 VLNPLVIENFEKLIERNPQTRFMTLYYAYMTLEVNPSLNLPNHGCFPDFSS
FT                 SAVVFDLTMKQDIRGIPDLLRSEQIPKIFASKFGHASCDKRFYTDGSKTND
FT                 STGFGVYNEFHSAAYKLQNPCSVYVAELTAIHYALERIASLPSDQYFIFTD
FT                 SLSSIEAIRSMRPVKHSPYFLGEIRSTLSALSNESYTITLAWVPSHCSIPG
FT                 NEKADSLAKVGAMEGDIYDRQIAFNEFFSMARQHALVSWQQKWDAGELGRW
FT                 LHSILPRVSKKPWFKGLDLSRDFIKVMCRLMSNHYSLGSHFYRIGLTDSNH
FT                 CSCGAGYQDINHVVWECPEYGFARSDFCASLRAQGKPEKEDIRDVLGKLDF
FT                 VYMKLMYNFLKQANIIV"
XX
SQ   Sequence 6584 BP; 1760 A; 1493 C; 1441 G; 1889 T; 1 other;
     tcattccttg ttgagtgctc gcccgagtca gtcgactatc gcgcttagtg atataccgat        60
     caaccgaagt tcaccagtgt ttttcccaag tatatgggtt ttttcctggc tacgatcgga       120
     aagcataccg ccgatagtgc acccgcacaa ggagcagcta ccattggccg agcccagatt       180
     ggtagactga acatctttaa cttgaccatc gccaccagca tcaatcggtg gcgataatac       240
     cacaagaggc atcatctaat tcgcaccacg tggcagaaca aaagcgatcg gcgtcatcgt       300
     ttcatcgcat caaaacaagc tgcagaaata gacgatcgca ccacgccggt acatctgtcc       360
     tcgcagctag agcagcagaa aggagattgt aggtattgtt cctctccagt ttcataccat       420
     ccgcattact tggtcgctgt tagtccccgt tgttagagtg atattctcac agtggtctcg       480
     aagtgctctt tcgctcaatt aattggcata tttttgatat ttttttcaaa acattttgtt       540
     ggagtaatat tcacacaccg tgtgacacag tggtctcgga gtgttttatt gctcaattaa       600
     ttttttttcc gcctcatttt ttttttgtga atatattttt tttatttgaa aatatatttt       660
     ttgttaatat tttttcgtta tttttttttt cttttttttc gttaatattt tttttttgtt       720
     aatatttttt tttttgttaa tatttttttt tcttttttta tttttttaca ctattaggaa       780
     tttctcgcca aactagttgt agtacgtgag ttggttttta tttaattcct ttggcaatag       840
     tgtgattaaa ttaagtgaag ttaattcgct cattagcgct gtgttgatct tcctttgcgg       900
     tagagcaaaa attgctccgc aatggaacca aatgatactg gcgggggcac gccggaatat       960
     ttagtctctt ctgacgatga gttagttttg ggtcagatga ataaaattct aaaaacccaa      1020
     catagtgagg ccatggagac catcgatgat ggtactcctt ctcctccttt atctccttca      1080
     gctgtgcctc cagtacactc aggtactgca ttgtcaggag atgttacggt taatctctct      1140
     gttcatgact caccgcattc gtctcaaaag caaacggtta ctaattctgg tctgcttggc      1200
     agttcaagcc aatcccatgc gttctccccc tctggttcct catcgaaccc ggcacccccc      1260
     cgccataaag cttacccacc cggatctaag ggtccctttc tggttttctt tcggcccaaa      1320
     gcgaatggaa aaccgttgaa caaactccaa attgaaaggg atctggcaaa atcgtttcga      1380
     ggtatcctcg agatagattc acccagccgt gataagttgc gtgtcacagt cagtgatcgc      1440
     gaccaggcga acaaaattgc tgcctttgag ctctttttga tggagtacag agtctacatt      1500
     cccagtcgcg aggtcgaatg ttatggagtg gtcacggagc acaatttgac tcgcgcagac      1560
     atcatgtcgg gagctggtgg gtttaaaaat cgtgccgttc cgctggctcc tgttcttgat      1620
     gccaatcaaa tgaacaaagt gttgcctgat ggctcaaaac agccgtcaaa ttcgttccgt      1680
     gtaaccttct ccggttcggc cttaccaagc gtcctcgtga ttgggcgtct tcggttacct      1740
     gttcgtctct atgtaccgac ggttatgcac tgtgaaaagt gccggcagtt gggccacact      1800
     gcaccttact gcagcaacaa accacgttgt agtaagtgtg gcgaacaaca tgccgaaggt      1860
     tcctgcaata tggagccaaa atgtacctct tgcggccaag ctcctcacga actcagtgca      1920
     tgcccgaagt acatagagcg ggagaaacat accataaact ctctgaaaca gcggtccagg      1980
     cgttcttatg cagacatgct gaaaaagatc gctccgactg ttgctccatc ggcccatacc      2040
     tttcaaagca acaatatctt cgcatccctg ccggataacg atcaatgctc tgactctgag      2100
     gatggagaag agtatacaat aattgagaca gggacgaaaa ggaagcgtgc tgttacaaaa      2160
     cggcgcttga agcaacaggc ttctcagaac gtccctgttg atcaaaacgc ttcttcaaag      2220
     cctttgacaa aatcaagaaa tggcggaatc accaaaaagg ggtcacctcc aggcttcaag      2280
     ttttcagctg gagaatttcc gtcacttccg ggaacttcta aaaccccagt tgtcccagtt      2340
     ttttgcccag aagaacaacc aattcgtcag caggagcaaa ataatgcttc cggaaaactg      2400
     actctttctg ggatagtgga tttcattttc gaaatgtttc aattctcacc cgaaacgagg      2460
     aacctgctca acatggcact ttccttggtg aaaccttttc tgaagcaaat agcttcaaag      2520
     tggccgattc ttgactcgtt cgtatctttc gatggctaat atggtcaatg aggtcggaga      2580
     tatgatcgaa gtgctacagt ggaattgtag aagtcttatg aaaaatatgg aggcgttcaa      2640
     atttttagta cacagcactc gctgcgacat atttgctctc tgtgaaacat ggctcacttc      2700
     tgataaaaat atctctttcc acgattttaa tattattcgt ctggatcgag gggatggata      2760
     tggaggggtg ctcttgggga ttagcaagct ccactccttt tacagaatcg acttcccctc      2820
     gatgacaggc attgaagtag ttgcatgtca tatcacagcc cgaggtaaaa gcctcagcat      2880
     agccagtgtg tacataccgc caaacgctag agtgtctcgc agagacctwg cggcaatatg      2940
     cgaagctatg cctgcgccat ggttggtcct aggagatttt aattctcacg gtacagcctg      3000
     ggggtcaccg agggacgaca atcgcgcaac cttaatatat gatctttgcg actacttcaa      3060
     tctgacaatt ttgaacactg gggaagcaac acgaataaaa cctccagatc ccccaagtat      3120
     gttagacctc tcaatctgtt cgaattcatt atcattggat tgcatgtgga aagtaattca      3180
     ggatccccat ggtagtgatc acctgcctat caaaatttca gttaccaata attcgtgtcg      3240
     aacacaccag atcgacgtag cgtatgacct cacgaagcat atcgactggg gaaaatatgc      3300
     tgaagcgatc tccgtaggtg agcaatcggt cgagatactt cctccgctgg aagaatatca      3360
     attcttatcc gcgttgatta taaacagtgc tcttcaagct cagcgtaaac cggttccagg      3420
     atcttcagta cgacgtcggc cgcccacccc gtggtgggat ggcgaatgca ccggagtcta      3480
     tcgcgaaaga tcagatgcgt ttaaagaata tcggaaacgt ggcacgcgcg ataactacga      3540
     tcggtattgt tctcttgacc gcaagttcaa gagcctcgtg aaagcgaaga aacgcggtta      3600
     ctggaggaat ttcgttaatg gtctatcacg ggaaacgtcg atgcgaactc tttggacggt      3660
     cggaagaaga atgcgcaatg cggtatcggt aaatgaggat cgtgaaagct cttctcgatg      3720
     gatattcgac ttcgcgaaga aagtttgccc ggattctgtc caagtgcaaa cgatcacacg      3780
     agattatcca gacgaaagga atgaaatgga ctcaactttt tcgatggcag aattctcact      3840
     tgctctcctt tcatgtaaca attctgcccc aggtatggac aggattaagt tcaacttgct      3900
     caaaaacctc ccagacgtcg caaagaggcg cttgttgaac ttattcaatg cattcttgga      3960
     gagcaacatt gttccggatg attggagaca agtgagagtt attgccatcc aaaaaccagg      4020
     aaagcctgct tcggactaca actcgtaccg tcctattgcg atgttgtcgt gtcttcgaaa      4080
     gttgttagag aagatgattc tctttcggct ggacaaatgg gttgaatcga atggccttct      4140
     ctcagatact caatttggat tccgcagagg caaaggaacg agcgattgtc ttgcgttgct      4200
     ttctactgaa attcaactgg cctatgctca aaaagaacaa atgggctcag tctttttgga      4260
     tattaagggg gcttttgatg cagtttgcgt agatgtcctt tcagacaaac tccacgagtg      4320
     tggactttcc tcgattttga acaactactt gtacaatttg ttgtctgaga agcatatgtt      4380
     tttctcacat ggaaactcga caactttgcg aataagttac atgggtctcc cccagggctc      4440
     gtgtttaagt cctcttcttt acaattttta cgtaagagat attgatgatt gtctcatgag      4500
     aaattgctcg ttaagacagc ttgcggatga cgccgttgtt tctgtcacag gaccagaggc      4560
     ggacgatttg caaggaccgt tgcaagatac tctggacaat ttgtccgcat gggctgtaaa      4620
     gctgggtatc gaattctctc cggagaaaac tgagttagtt gtcttttcta ggaagcgtaa      4680
     tcctgcggat ctagagcttc aattcatggg taaggaactc tctcaaggtt tatcacatat      4740
     gtatttaggg gtctggtttg attctaaatg cacctgggga aaacaaataa gatatctgta      4800
     tcagaagtgc caacaacgaa tcaacttcat gcgtacactc acaggaacat ggtggggagc      4860
     ccacccggat gatctgataa agctatatcg caccacgatt ctgtcggttc ttgaatacgg      4920
     tagtttttgc ttccaatccg ccgcgaaaac acacattctg aagctccagc gtattcagta      4980
     tcgctgtctt cggatcgctt taggctgtat gaactcgact cataccatga gcttagagtt      5040
     attagcagga atactgcctt tatcagatcg gttcgtggaa ttgtcgttaa ggttcctcat      5100
     ccgctgtgaa gtgttaaacc cgttggtaat tgaaaatttt gagaagctaa tcgaacgaaa      5160
     tcctcaaaca agatttatga cattgtacta cgcgtacatg actctggagg ttaacccttc      5220
     tttgaatctt cccaatcacg gttgcttccc tgacttctca agttccgctg tagtttttga      5280
     tctgaccatg aagcaagata tccgtggaat accagatctg cttcgttcgg agcaaatacc      5340
     aaaaattttt gcaagcaagt tcggtcacgc cagctgcgat aaaaggtttt acacagacgg      5400
     gtcaaaaaca aatgattcca ctggatttgg tgtatataac gagtttcata gcgccgcata      5460
     taaacttcag aacccttgct ccgtgtatgt cgcagaatta acggctatac attacgcatt      5520
     agagcgaatt gcctctcttc cctctgatca atatttcatt tttacggata gccttagctc      5580
     catagaggct attcgttcaa tgaggccggt aaagcactct ccgtatttcc tcggtgaaat      5640
     acgatctaca ttgagtgctc tatcgaatga atcatatact atcaccttgg cctgggtccc      5700
     ttcgcattgc tcgattccgg gcaatgagaa agcggactcg cttgccaagg tgggcgctat      5760
     ggaaggcgat atttatgatc gacaaatcgc cttcaatgaa tttttttcaa tggctcgtca      5820
     acatgcattg gtcagctggc aacaaaagtg ggatgccgga gaattgggca ggtggttaca      5880
     ttccattctc ccgcgggtat cgaagaagcc gtggttcaag gggttggact taagccgaga      5940
     ctttattaag gtaatgtgtc gtcttatgtc caatcactac tctctaggct ctcacttcta      6000
     tcgaataggg ctcacagata gcaatcactg cagctgcggt gcaggttacc aagatatcaa      6060
     ccacgtagtt tgggaatgcc ccgaatacgg ttttgccaga tctgattttt gtgcatccct      6120
     cagggcccaa gggaaaccag aaaaggaaga cattagggat gtgttgggta aacttgactt      6180
     tgtgtacatg aagcttatgt acaatttttt gaaacaagct aacatcattg tttaactccc      6240
     ctttctcgtc ggtccacttg tccaccttgt gtcccctcga aacccgtctt tttgtatcgt      6300
     tacaggttgt cattgtccac tcaacgttcg accagcagca aagcaaacac gtcacaactt      6360
     aaagctgctg aatgtcaacg gaacgatccc attgtcctat cccttccttg aaattattgt      6420
     tacccctaac ctcgaccaaa ccgcgagttt ttcggttccc caaaactaac atagaaaatt      6480
     aagaaaacac catgaatttg taaataaaat caaaagaact cggctccgta atgcctaatg      6540
     gcgcatgagc ctaataaata aatgattaag taaaaaaaaa aaaa                       6584
//
ID   I-7_AAe     repbase;    DNA;    INV; 6293 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6293
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1361-1361 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           698..2278
FT                 /product="I-7_AAe_1p"
FT                 /translation="MDVTDDGGGPKRFDISDDDVESVESPSFELLSPTIPG
FT                 KLQESMDTSVEDNAVLPSTSGMNNTGLKMHSVVPQAISLPHSQTNGSSSAS
FT                 STATPRLKAYPPGSKGPFLVFFRPKGKPLNKLQIQKDLAKSFRDIVEVSSP
FT                 NRNKLRVTVSDREQANRIAAYELFLREYHVYLPSQEIECSGVVTEPFLTCE
FT                 DIRSGTGGFKNRAVPPVQIIDVKQMNHVSSDGTKKPSNSFRVTFSGSALPD
FT                 VLVIGLLRLPVRLYKPTVMHCEKCQQLGHTATYCCNKPRCSKCGEQHVEGP
FT                 CPSEPKCTCCGQAPHELVACPKFIEREKHTIRSLQQRSKRSYAEILKKIAP
FT                 TNDPPAQSSNSNNLFTSLPIDDLGSGTEDGEEYTVINTGTKRKRAIAKRLK
FT                 QRQHDPQNVSVGQVLQPSLVKSRRDRNSTNAVPPGFKFSVGDFPSLPGTSK
FT                 TPDAPIFCSENQQSCHQESRQEQVDASGKMTLSGLVDIIFQMFEVSPAIRN
FT                 LINMILPLVKPLLKQLASNWPILDSFISFDG"
FT   CDS           2274..5948
FT                 /product="I-7_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANLTNEVGDMIEVLQWNCRSILKNIDEFKFLVHSTR
FT                 CDVFALCETWLTSDKDVPFHDFNIIRLDRGDGYGGVLLGINKLHSFYRIDF
FT                 PPMVGTEVVACHVTIRGKSCSIASVYIPPNARVSRRDLSAICCAMPAPWLI
FT                 LGDFNSHGTAWGSPRDDNRASLIYDLCDYFNLTILNSGEATRLKPPDPPSM
FT                 LDLSICSSSLSLDCTWKVIQDPHGSDHLPIRISVTNNSNPIRQINRPYDLT
FT                 KHIDWEKYAEVVSDGEQLVDVLPPMEECQFLSGLIIESALQAQRRPFPGSA
FT                 VRSRPPTLWWDDECTKVYRDKSAAFKEFRKRGTLENYDRFTKLERKFKSLV
FT                 KAKKRGYWRNFVNGLSRETSMRTLWTVGKRMRNASKVNEDRESSPRWIFDF
FT                 AKKVCPDSVPTQQIIRDTQTNRNEMDAPFTMVEFSLALLSCNNSAPGMDGI
FT                 KFSMLKNLPDVMKRRMLNLFNRFLEGNIVPDDWRQVRVIAIQKPGKPASDY
FT                 NSYRPIAMLSCIRKLLEKMILFRLDKWVESNGLLSDTQFGFRRGKGTSDCL
FT                 ALLSTEIQLAYAQKEQMGSVFLDIKGAFDSVNVDVLSDKLHECGLSPILNN
FT                 YLHNLLSEKRMSFSHGTSTTSRISYMGLPQGSCLSPLLYNFYVRDIDDCLV
FT                 ENCSLRQLADDAVVSVTGPGADDLQRPLQDTLDNLSTWAVKLGIEFSPEKT
FT                 ELVVFSRKRDPVEIKLQFMGKELTQGLSHMYLGVWFDSKCTWGKHIKYLHQ
FT                 KCQQRINFMRTLTGTWWGAHPEDLIKLYRTTILSVLEYGSFCFQSAAKTHI
FT                 LKLQRVQYRCIRIALGCMNSTHTMSLEVLAGVLPLSDRFAELSLRFLIRCE
FT                 VLNPLVIENFEKLIERNPQTKFMTLYYRYMTLEINPSSNVSHGCCFPVFSS
FT                 STVAFDLTMKREIHGIPDPLRSEYIPLIFTDKFGQVSSDRTFYTDGSKIND
FT                 STGFGVFNEFHSAAHKLQNPCSVYVAELAAIHYALERIASLPSDQYFIFTD
FT                 SLSSIEAIRSMRPVKHSSYFLREIRSILSALSNHXITLVWVPSHCSIPGNE
FT                 KADSLAKVGAMEGDIYERRITFNEFFTIARQQAMISWQQKWNEGDMGRWLH
FT                 SILPQVSNRPWFKGLDMSRDFIKVMCRLMSNHYSLGSHFYRIGLADSNRCS
FT                 CGAGYQDINHIVWYCPEYEIARTNLCASLRAQGKPDKEDIRDVLGRLDFDY
FT                 MFLLFKFLKKIDVFV"
XX
SQ   Sequence 6293 BP; 1721 A; 1476 C; 1340 G; 1753 T; 3 other;
     tcattccctg tcgagctttc ggacgagtca gacgcattgt tccgtttatc atcgcgcgat        60
     aatctttcma caagtggagt ttttgttttt cattcctcac gctgaggttt ttattttata       120
     tccttgccat cctgcttgtg caataattcg caaggtgatt cctgccgacg acgggaagcg       180
     agctggcatt ggcgatgcca ttgcagcatc gttcatcttt aaccaaagac gatcatcgaa       240
     gtccatcatc gtcatcatct ggtcgccaat aacaacaacg acgacaacgg cgacatagac       300
     gagtacggct gctgtattgg aaattggcgc agcaacaaaa aaactaccta caccccgaac       360
     ggatagataa gtagctttta ctctttattg cttttcgcct tattgttttc ccatccaccg       420
     tctatcacgt gatagttgtt ttcgggtaca tatcagtggt tgccaacttg cggcccacgg       480
     cccacgttag taagtttaaa aagttttttt tttttttttt ttattattat tattaatatt       540
     tggattgatt catcagttat cattatcatt actactagta tccttcttct tttttttttt       600
     ttttgttttg ttttgtaaat attaggttag ttgttgtgat agttttacta ttgtttttgg       660
     tttcggctgt ccactagggt ggtgctaagc catctcaatg gacgtaaccg atgacggcgg       720
     ggggccgaaa aggttcgata tctctgatga tgatgttgaa tcagtagaat ctccctcatt       780
     tgaactattg agtccaacca tccctggaaa gctccaagaa tcgatggata cgtccgtcga       840
     ggataatgca gtgcttccct ccacctcagg gatgaacaat actggtctga aaatgcattc       900
     tgtggttccc caagcaataa gtcttcctca ttcccagaca aatggttctt ctagcgcttc       960
     ttccactgcg accccccgcc ttaaagctta tccgcccgga tctaagggtc cctttctggt      1020
     tttttttcgg cccaaaggca aaccgttaaa caagcttcaa attcagaagg atctggcaaa      1080
     gtcgtttcga gacattgtcg aggtgtcttc gcccaaccgt aataaattgc gggtcaccgt      1140
     cagtgaccgc gaacaagcaa atcggattgc tgcctacgag ctttttctga gggagtacca      1200
     tgtctacttg cctagtcaag agatcgagtg ctcaggagta gttaccgaac cgtttttgac      1260
     atgtgaggac atcagatctg gtactggagg ttttaaaaat cgtgccgttc ctccagtaca      1320
     gataattgat gtcaaacaaa tgaaccacgt gtcatctgat ggcaccaaaa aaccttcaaa      1380
     ttcgtttcga gtgacttttt ctgggtcagc cctcccggac gtcctcgtga ttgggcttct      1440
     tcgtttacct gtccgtctct ataaaccgac ggtcatgcac tgcgaaaaat gccaacaatt      1500
     agggcacacc gcaacgtact gctgtaacaa acctcgttgc agcaagtgcg gagaacagca      1560
     tgtggagggc ccttgtccaa gcgaaccaaa atgtacmtgc tgtggacaag ctccacatga      1620
     actagtcgca tgcccgaagt ttatagagcg ggagaaacac acaattcgat ccttgcaaca      1680
     acgatcgaag cgatcctacg cagaaattct gaaaaagatc gctccgacca atgatccacc      1740
     agcccaatcg agtaacagca ataacctctt cacttccctg cctattgatg atctgggctc      1800
     tggcactgag gatggagaag agtacactgt cattaacaca ggaaccaaga ggaagcgagc      1860
     cattgcaaag cggctcaaac aacgccagca tgatcctcaa aacgtttctg ttggacaggt      1920
     tctccaacca tctctggtaa aatcaagaag ggacagaaac tctactaacg cagtacctcc      1980
     gggttttaaa ttctcagttg gagactttcc gtcacttcca ggaacatcca aaaccccgga      2040
     tgcccccatt ttttgctcag aaaaccaaca atcttgtcac caggaaagtc gacaagaaca      2100
     ggtcgacgct tccggaaaaa tgactctttc tgggttagtg gatatcatct tccaaatgtt      2160
     cgaagtctcg cccgcaataa ggaaccttat caatatgatt cttcctttgg taaaacctct      2220
     tctgaagcaa ctggcttcaa attggccaat tcttgactcg ttcatatctt tcgatggcta      2280
     atttaaccaa cgaggtcggg gatatgatcg aagtgctaca gtggaattgt agaagcattt      2340
     taaaaaatat agacgagttc aaatttttag ttcacagtac gcgctgtgac gtatttgccc      2400
     tttgtgaaac atggctaact tccgataaag atgtcccttt ccacgatttt aatattattc      2460
     gtctagatcg aggggatggg tatggaggag tgcttttagg gatcaataaa ctccactcct      2520
     tttatagaat tgatttcccc ccgatggtag gcactgaagt agttgcttgt catgttacta      2580
     tacgaggtaa aagttgcagc atagccagcg tgtacatacc acctaatgcc agagtatctc      2640
     gcagagatct ttcggccata tgctgcgcta tgcctgcacc atggttgatc ctaggggatt      2700
     tcaattctca cggtacagcc tgggggtcac cgagggacga caaccgcgct tccttgatat      2760
     atgacctttg tgactacttc aacttgacaa ttttgaactc gggggaagca acacgattaa      2820
     aacctccaga tcctccaagc atgttagacc tctcaatctg ttcgagttca ctatcattgg      2880
     attgcacgtg gaaagtaatt caagatcccc atggtagtga tcacttgcct atcagaattt      2940
     cagttaccaa taattcgaat ccaattcgtc agataaaccg cccgtatgat ctcaccaagc      3000
     acattgactg ggaaaaatac gccgaggtgg tctccgatgg cgaacagtta gtggatgtcc      3060
     ttcctccgat ggaagaatgt caatttctct ccgggttaat tattgagagt gctcttcaag      3120
     cccagcgtcg cccttttcca ggatctgcag tacgaagccg gccacccact ctgtggtggg      3180
     acgacgagtg tactaaggtc tatcgcgata aatccgccgc gttcaaagaa tttcgcaaac      3240
     gcggtacact agaaaattac gaccggttta ccaagctcga gcgaaaattt aaaagccttg      3300
     taaaggcgaa aaaacgcgga tattggcgta attttgttaa cgggctatcg cgcgaaacgt      3360
     caatgagaac actttggacc gtcgggaaaa gaatgcggaa cgcttcaaaa gttaatgagg      3420
     atcgcgaaag ctctcctcgg tggatcttcg acttcgccaa gaaggtctgc ccggattccg      3480
     ttccaaccca acaaatcatt cgcgacacgc aaaccaacag aaacgagatg gatgcaccat      3540
     ttacgatggt tgaattttca cttgctctcc tctcatgtaa caactctgcc ccaggcatgg      3600
     atggaattaa attcagcatg cttaaaaacc tcccagacgt catgaagagg cgcatgctga      3660
     atcttttcaa tcgattcttg gagggcaaca ttgttccgga tgactggaga caagtgagag      3720
     tgatagccat ccaaaaaccc ggtaaacccg cgtcggatta taactcgtat cgacctatcg      3780
     cgatgttatc atgcattcga aagctattag agaaaatgat tctctttcgg cttgacaaat      3840
     gggttgaatc gaatggcctt ctatcagata cgcaatttgg tttccgcaga ggtaagggaa      3900
     cgagcgactg tctagcgttg ctttctacag aaatccaact ggcctatgct caaaaggaac      3960
     aaatgggttc agtattcttg gacattaaag gggcttttga ttcagtaaat gtagacgtcc      4020
     tttcagacaa actccacgag tgtggtcttt ccccaatttt aaataactac ttgcataact      4080
     tgttgtctga gaaacgtatg agcttttctc acggaacctc aacaacttca cgaattagtt      4140
     acatgggtct cccccagggc tcatgcctaa gcccccttct ttacaatttc tatgtcagag      4200
     acatcgatga ctgtctcgtg gaaaattgct cgttaagaca gcttgcagat gatgccgttg      4260
     tttccgtaac aggaccaggg gcggatgatc tgcaaagacc actgcaagat actttagaca      4320
     atttgtctac ttgggctgta aagctgggta tcgaattctc tccggagaaa actgagttag      4380
     ttgtcttttc taggaagcgt gacccagtag agatcaagct tcaattcatg ggtaaggaac      4440
     tcactcaagg cctttcgcac atgtatctag gggtctggtt cgactccaaa tgcacctggg      4500
     gaaagcacat caagtatctg catcagaagt gccagcaacg aatcaatttc atgcgtacac      4560
     tcacaggaac atggtgggga gctcatccgg aagatctgat aaagctatat cgtacaacaa      4620
     tactctcggt cctcgaatac ggtagctttt gcttccaatc cgccgcgaaa actcacatct      4680
     tgaagctgca gcgtgttcag tatcgctgta ttcgaatcgc tttaggatgc atgaactcaa      4740
     ctcatacaat gagtttagaa gtattagcag gagttctccc attatcagat cgtttcgcgg      4800
     aattgtcgct ccggttcctc atccgctgtg aagtgttaaa cccattggta attgaaaact      4860
     ttgaaaagct aatcgaacga aatcctcaaa caaaattcat gacactgtac taccggtaca      4920
     tgactctgga gattaatcct tcctcgaatg tatcccacgg ttgttgcttc ccagtattct      4980
     ccagttcaac tgtagctttt gatctgacca tgaagcgaga aatccatgga attccagatc      5040
     cactccgctc ggagtatata ccattaattt tcacagacaa gttcggccaa gtcagcagcg      5100
     acagaacgtt ttacacagac gggtcaaaaa taaatgattc cactggtttt ggtgtattta      5160
     atgaatttca tagcgccgcc cataaacttc agaatccttg ttccgtatat gttgctgaat      5220
     tagcggcaat acactacgca ttagagcgaa ttgcctctct tccctctgat caatacttca      5280
     ttttcacgga tagtcttagc tccatcgagg ctattcgttc aatgaggccg gtaaagcact      5340
     cgtcgtattt cttacgggaa atacgatcca ttttgagtgc tctatcgaat cacaamatca      5400
     ccttggtttg ggtcccttct cattgctcga ttccgggcaa tgagaaagcg gactcactcg      5460
     ccaaggtggg cgctatggaa ggtgatattt acgaacggcg tattaccttc aatgaatttt      5520
     tcacaattgc tcgtcagcaa gccatgatca gttggcaaca aaaatggaat gaaggggata      5580
     tgggcaggtg gttacattct attctcccac aggtatcgaa tagaccgtgg tttaaggggt      5640
     tggacatgag ccgagatttt atcaaggtaa tgtgtcgtct gatgtccaat cactactccc      5700
     tgggctcaca cttttatcga atagggctcg cagacagcaa tcgttgtagt tgcggcgcag      5760
     gctaccaaga catcaatcat attgtttggt actgtcccga atacgaaatt gccagaacca      5820
     atttatgtgc atccctcagg gcccaaggaa aaccagataa ggaagacatt agagatgtgt      5880
     tgggtaggtt agatttcgat tacatgttcc tcctcttcaa atttttgaag aaaatcgatg      5940
     tttttgtttg attacccatg tctgtcgttc cgcttgtccg cctcgttccc cttgaaacca      6000
     ttttgttgta tcgttacagg tcgtttaagt ccgccccatg attgacgaac agcatcatac      6060
     cgccactttg ctgctatctg tgatcaatca aacccttaaa tcccatcctt tccccaaaga      6120
     taattgtatt ccctaacctc gaccaaaccg cgagttttac ggttccccaa aactaacata      6180
     gatgtttaag aagcaaacaa gattttgtaa accaaatcaa atgaattcgg ctccgttatg      6240
     cctgtcggcg catgagccta ccaaataaac gaataagtaa aaaaaaaaaa aaa             6293
//
ID   I-7_BTa     repbase;    DNA;    INV; 6308 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6308
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 700-700 (2018).
XX
DR   [1] (Consensus)
XX
CC   a censored sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..2131
FT                 /product="I-7_BTa_1p"
FT                 /translation="MATITSATNSKKTPPTSKPATVPSPDSYTPNQLFYNA
FT                 NHSAPYLVNINLPQSSRANPTRNGAASAHIHPMQLSRILTRNKVQSPLFRQ
FT                 SVVIVSIFSFVISVFSLFFRKALLLLVLFFYLGLFPRSVPSFVSFRFHLNF
FT                 SFSLHHICAVLNLKDDPNHLIRYQLCKSFFLYLIMPDQEKTPDPGGNPDPQ
FT                 YLTSRNNNNNDQTTQSPTNNNNQSAAPQSTGNRNAFIIKRLNDIRYEEDAT
FT                 GPCMVAISKPGIGNKHPTLIGEFLYKSKISGLKTIQRINKDLIHIELVTRE
FT                 QANNFLNDDNNTLPYENVKCFLPLKFTTKRLIVNNVHSDLEIESIGQYLKD
FT                 KYKRIISVRRIFRKNDDGALIPTEKLDILWEGTTRPDYLYIFYSRCATSPY
FT                 IYSTVFCTNCLNYGHRAFFKDSLICKSQSRCNKCSESHAGQDICPNNLKCF
FT                 HCKGNHQTFSPTCPEMHKQKLIKKYMATYDLNFKAAQNLLNTYEKDSKVNL
FT                 TGRIEEIQKNIRTVESNNIENIQSLANFPELKNKFVNLIDINAMEIDNYQY
FT                 SMKDLTRPFSEIVASPSATRKKPKTNSFEDELPSKAWLDNYRASLKEAPQA
FT                 ILNKTAKPKEISNSRNPSMQQTKINNPNTQSNLTQVPSNSNKPTPQQCSVT
FT                 NSPPTNSSSKITNHPNNLNISIPKTNSVSTPNNTLKPK"
FT   CDS           join(2288..3292,3213..4949,4934..5809)
FT                 /product="I-7_BTa_2p"
FT                 /translation="MISSNLIKPKLNNFKILCWNIHSLLPNDVDLSFLIHH
FT                 HDPDIVMLSETWMKPHYRKRFQGYNCFRDDRGDGYGGLITLIKTKYISYPI
FT                 AFNLNVFADERIEAQLSKIIIDGSDFFFINFYIHPNSKISIEELRSFFQLN
FT                 DLSNKTFMLWAGDFNAKHPVWGYPTSDRRGTEIFDFSQQQNLFNINSIFPQ
FT                 PTRRTAPGENKSYTDLAFCSVALALDFDWESLNSGSSDHFPCLYTYKKNTE
FT                 RISNPSEQSNLLPLKSLKNWTTFREALDRVLDQPFYSYDLFIEKINEALNV
FT                 AVNKENKNNPSTPQTINTTPIKERKKRFKKIPWWNEGMSKIERTLPPSKRE
FT                 KKGLKKYLGGTRECQKLKDKRDNLATNYKLNNDLNTYIEYKKACAEFKIMI
FT                 RKNKRQQWRIFMDSLNYNTPTKIIFEKIKILNKALIPFANTNEDWVEDFLA
FT                 HLTPDATFEKQWTEETIFTNNLEKFCIEELKIALKKLKKKNPGLDRIQVDC
FT                 LIQLSPKGQNILLSIFNQILQTKKIPEAWKMIKIYPSLKKDQDPKLRTSYR
FT                 PIGIISAVRKLFEKMILNRLEYELESKFKLSPYQAGFRKGKNIYQNLWNIS
FT                 SNAYKALGEKKFMPCLFLDINNAYNNVQYHILLDKLRALGINIDLAKIIFN
FT                 LITNNKVTLAYNFKTWGPRVQSKGLTQGGMLSPILYLIYTAEVHKKLQHSS
FT                 ISEFADDIAIYSLDEDLNVAVTKLTSDFHEIHSIINLLGLDFSLSKTKFTI
FT                 FTNRKIPQNFTINLLNTILTVQETVKYLGLLFHRKMNWYHHALWVKTKIAT
FT                 KLNILKYLHGSAWGINQNVSRLLFLSMIRPIMDYALPIYCNDYKISNKINI
FT                 IQNNCLRKVLSVLGSTPTNNLNAEAAIPPIQFRFNFLTDKLILKSMSLRNN
FT                 AIINDMKSLTYEILNIINDKFPNYIQYYTDGGKSESYVTAVFTINNFFKLY
FT                 KLSNFASIFDAEAYAIKRAIMHSLTNNHKNIIICSDSQNVLKNLLNQSSDL
FT                 HPTINDIKSLLYHNQLNNIWLLWIPSHVGIPGNERADSLTKLLPLANNIND
FT                 ELYYKQLIPHVKKQAYLEWNQEWIECSWKGQKLKSICPKINRKPWFDKLKW
FT                 NRSEIKNLIRLRIGHGNFPSHLNRLNLKDSDLCDCGLYGDLNHILFECQNL
FT                 INRDILIQKLIENNYSPPFKVSYILHTPDPKIYKTIANFLKDNNINL"
XX
SQ   Sequence 6308 BP; 2376 A; 1308 C; 865 G; 1759 T; 0 other;
     ccatctctaa aattacctaa aaaaacccct ctgtggggga ttcgttgtga gagtctgtgc        60
     ggccagcaac atggcaacta taacaagtgc cacgaactcc aagaaaactc cgccgacatc       120
     aaaaccagca acagttccct ctccggactc atacactccg aaccaactgt tctacaatgc       180
     aaaccacagt gctccatact tagtgaacat taacttaccc caatcttcaa gagctaaccc       240
     aacccgcaac ggagcagcct cagcacacat ccatcccatg cagctttcaa gaattctgac       300
     aagaaacaag gttcagtccc cgctgtttcg ccaaagcgtt gtgatcgttt cgattttctc       360
     tttcgtaatt tcagtattta gtttattttt tcgaaaagct ttgcttctgt tggttttgtt       420
     cttctatcta ggacttttcc caagaagtgt tccttcgttc gtttccttcc gttttcatct       480
     taacttttct ttctctcttc atcacatttg tgctgtactt aacctcaaag atgatcctaa       540
     tcacctaatc cgttaccaat tatgtaagtc ctttttctta tacctcatta tgcctgatca       600
     agaaaaaacc ccagatcctg ggggcaaccc tgatccccag tatttaacta gtagaaacaa       660
     caataataat gatcaaacta ctcaaagccc tactaataat aacaatcaat ctgcggcccc       720
     tcaatctaca ggtaatcgta atgctttcat tataaaaaga ttaaatgaca ttcgttacga       780
     agaagatgca acaggaccct gtatggtagc tattagtaaa cctggtatcg gtaataaaca       840
     cccaaccctc attggagagt tcctatataa atctaaaatc tcagggttga aaacgatcca       900
     aagaataaac aaggacctca tccatatcga gttagtaacg agagaacaag caaataattt       960
     tcttaatgat gataacaaca ctctccccta tgaaaatgtt aaatgttttc tgccattaaa      1020
     gttcactacc aagaggctaa tagtaaacaa cgtccactca gacttggaaa tagaaagtat      1080
     tggtcaatac ctgaaagata aatacaaaag aataatcagt gttagaagga ttttcagaaa      1140
     aaatgacgat ggagccctca tccccacaga aaaactagac atcttatggg aaggcactac      1200
     aagaccggat tacctataca tcttttattc caggtgcgct acctccccat atatctatag      1260
     tactgttttc tgtactaatt gtttaaatta cggacaccga gcctttttta aagactcctt      1320
     aatctgcaaa tctcagtctc ggtgtaacaa atgtagcgaa tctcatgcgg gacaagacat      1380
     ttgtcctaac aacttaaaat gttttcattg taaggggaat caccaaacct tttctccaac      1440
     atgcccggaa atgcataaac aaaagctgat aaaaaaatat atggctacat acgacttaaa      1500
     cttcaaagct gcgcaaaatc tactcaatac ttacgaaaaa gactcgaaag taaaccttac      1560
     aggtaggatt gaagaaatcc aaaagaatat aagaacagtc gaatcaaaca atattgaaaa      1620
     tattcagtct ttagctaatt tcccagaact taaaaataaa tttgtaaatc tgatagacat      1680
     taatgctatg gaaatagata attaccaata ttctatgaag gatctaacta gacctttctc      1740
     tgaaattgtg gcttctcctt ctgcaactag aaaaaaaccg aaaactaact cctttgaaga      1800
     tgaactccca tcaaaagcat ggctagataa ctatcgcgca agtttaaaag aagcccccca      1860
     agccatcctt aataagaccg caaaacccaa agagatttcg aattcccgaa acccttccat      1920
     gcaacaaaca aaaattaaca atccgaatac gcaaagtaat ctaactcaag tcccttctaa      1980
     ttcgaataaa ccaacccccc aacaatgctc tgtaactaat tcccccccaa caaactcatc      2040
     atcaaaaata actaaccatc ctaataatct taatatatca atcccaaaaa ctaactctgt      2100
     atcaacccca aacaatacgc tgaaacctaa ataacacctt caaaaaaaaa aaaaatactt      2160
     atatcaatcc tcccttgaat aatctaaaga aaaaaaataa ttaaaaaaaa aaaaaaacaa      2220
     tatattccaa acaaaaatat tacaatttgt tttattattc ttaaatataa attatcatcc      2280
     aacaccaatg atatcttcta atcttataaa acctaaacta aacaatttta aaatcctatg      2340
     ttggaatata cattccctcc taccgaacga tgtagacctg tctttcctaa tccaccatca      2400
     tgacccagat atagtaatgc tttctgaaac ctggatgaaa ccccactatc gaaaaagatt      2460
     ccaaggttat aattgtttca gggatgacag aggagacggc tacggaggcc ttattaccct      2520
     aattaaaact aaatatatct catacccaat cgcttttaac ctaaatgtgt ttgcagatga      2580
     gcgaatagaa gctcaattat ctaaaataat aattgatggc agcgatttct ttttcataaa      2640
     tttctatatc catccaaaca gtaaaatatc aatagaagaa ttacgtagtt tttttcaact      2700
     aaacgattta tctaataaga cttttatgct ctgggcgggc gatttcaatg ccaaacatcc      2760
     tgtttgggga tatcctacta gtgacagaag aggcactgag atttttgatt tctcgcaaca      2820
     acagaacctc ttcaatatta attctatatt cccccaacct actaggcgaa cagccccagg      2880
     ggaaaacaaa agttacacag atcttgcctt ctgctcagta gctttagctt tagactttga      2940
     ttgggagtca ctaaattcag gaagtagtga tcacttcccc tgcctttaca cctataagaa      3000
     gaacaccgag agaatatcaa atccatctga gcaatctaat ttactacctc tgaaatcttt      3060
     gaaaaactgg acgacattca gagaggcttt ggatagagtc ctggaccaac ccttctattc      3120
     ctacgatctt ttcatagaaa aaataaacga agctcttaac gtagcagtta ataaggaaaa      3180
     caaaaacaat ccctcaactc cccaaacaat aaacactacc cccatcaaag agagaaaaaa      3240
     aaggtttaaa aaaatacctt ggtggaacga gggaatgtca aaaattgaaa gataagagag      3300
     acaacttagc aacgaactat aagcttaata acgatttaaa cacttacatc gaatataaaa      3360
     aagcctgtgc cgaatttaaa attatgatca ggaaaaacaa gagacaacaa tggagaatat      3420
     ttatggattc cttaaattat aatactccga ctaaaatcat atttgaaaaa attaaaattc      3480
     tcaacaaggc actgatacct ttcgctaata ccaatgagga ttgggtcgaa gacttccttg      3540
     ctcacctgac acctgatgct acgttcgaaa aacaatggac ggaggaaacc atctttacca      3600
     ataacctaga aaaattttgt atcgaagaac tcaaaatagc tctcaaaaaa ttaaaaaaga      3660
     agaacccggg tcttgacagg atccaagtag actgtttaat tcaactctct cccaaaggtc      3720
     aaaatatttt actatccatt tttaatcaaa ttcttcagac aaaaaaaatt ccagaagcat      3780
     ggaaaatgat aaaaatctat ccttcattga aaaaagatca agatcctaaa ttaaggacct      3840
     catatagacc catcggtatt atttcagctg tcaggaaact ctttgaaaaa atgatattaa      3900
     acagactaga atatgaatta gaatcaaaat ttaaactctc cccctatcaa gctggattcc      3960
     ggaaaggaaa aaacatttat caaaatctat ggaatatttc ctcaaatgca tataaggcat      4020
     tgggagaaaa gaaatttatg ccatgcttat ttttagacat aaataacgct tataataatg      4080
     tacaatatca tattttgcta gacaaattac gagcgctagg tattaatata gacttagcta      4140
     aaatcatatt caatcttatt actaataata aagtgacctt agcatataat tttaaaactt      4200
     ggggaccgcg agttcaatca aaggggttaa cccaaggagg aatgctaagt cctatcctat      4260
     atttaatata cacagcagag gtacataaaa agttacaaca ttcatccatt tcagaattcg      4320
     cagacgacat agctatctat tccctagatg aagatctaaa tgtagcggtc acaaaactaa      4380
     catctgactt ccatgaaatc cactcgataa ttaatttgtt aggtctcgac ttttcacttt      4440
     ctaaaacaaa attcacaata ttcacaaata gaaagatacc ccaaaatttt acaataaatc      4500
     ttttgaatac gatattaaca gtccaagaaa cggtaaaata tttagggctg ctgttccaca      4560
     gaaaaatgaa ctggtaccac catgctctat gggtaaaaac caaaattgct accaaactta      4620
     acatccttaa atacctccat ggctcggcgt ggggaattaa ccaaaatgta tctcgtttac      4680
     tctttctaag tatgattaga cccataatgg actatgctct acctatatat tgtaatgact      4740
     ataaaattag caataaaatc aatataatcc aaaacaattg cttacgaaaa gtattaagtg      4800
     tcttagggtc gacgccgact aacaatttaa atgctgaagc agcaatcccc cctatccaat      4860
     tccggtttaa tttcttaact gataaactaa ttttaaaatc aatgagtcta agaaacaatg      4920
     ccattataaa tgatatgaaa tccttaacat aatcaatgat aaatttccca actatattca      4980
     atactatacg gacggaggca aatcagaatc gtatgtaaca gcagtattca ccatcaataa      5040
     tttctttaaa ctatataaat tatccaattt cgcatcgatc tttgacgcgg aagcttatgc      5100
     cataaaaaga gctatcatgc atagcctaac taataatcat aaaaatataa taatttgctc      5160
     tgactcccaa aatgttctga aaaatctgct taatcaatcc agtgatctcc acccaacaat      5220
     aaatgacata aagtcacttc tgtatcacaa ccagcttaat aatatatggc tattatggat      5280
     tccaagccat gtaggaatcc cagggaatga aagagcagac agcttaacaa aattgctccc      5340
     cttggccaat aatatcaatg atgaactgta ttataaacaa ttaatccctc atgttaaaaa      5400
     acaagcatac ctagaatgga accaagaatg gattgaatgt tcctggaagg gacagaagct      5460
     aaaatcaatc tgcccaaaaa ttaatcgaaa accttggttt gataaactaa aatggaatcg      5520
     tagtgaaata aaaaacttaa ttagacttcg aataggtcat ggaaattttc catcacattt      5580
     aaatagacta aatctaaaag actcagacct ttgcgattgc ggactatatg gtgacttaaa      5640
     ccatatacta tttgaatgcc aaaatctaat aaatcgagat atactgatcc aaaagctaat      5700
     cgaaaataac tactcccctc catttaaagt ctcatatatt ctccacactc cggatcccaa      5760
     gatatataaa accatcgcta atttcttaaa agataataat ataaatctat aaaaaaaaaa      5820
     aaaataaaaa ttatttaaaa aaaaaaaaaa aagtaaaaaa ataaaaaata aaaaaaaata      5880
     aataaccagt ttttaagtaa caatcaacta tattagttat tttgtaggag ttaatctcta      5940
     tttccaacca tatccacagt cccaatcata cctccatatg taaccagttt ttaagtaaca      6000
     atcaactata ttagttattt tgtaggagtt aatctctatt tcccaccata tccacagtcc      6060
     caatcatacc tccatatgtt cactttgtat gttatccagg gcccagtttt ccctggtata      6120
     ggagtcgctt agaagggtct ctaagcgtga agatggtgat gttagaataa actaaatacc      6180
     ttacctttct attaacctcc tttcccactc atgtccatta aattctaatt tgttatcctg      6240
     tctatagatg gctgtaggtt cctctctttg aatataagcc aataaaccat cagaagaaga      6300
     agaagaag                                                               6308
//
ID   I-7_DBi     repbase;    DNA;    INV; 4959 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   31-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from Drosophila biarmipes.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4959
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 931-931 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           170..1360
FT                 /product="I-7_DBi_1p"
FT                 /translation="MNRPPDLSNRAQCNETPFYESKFIVITRSDENSFEKV
FT                 SPFVIKKVIDFTCGSEVISCQKTRAGTLLVKTKGLYQAQRLLNLKAFHDFP
FT                 VTVTEHSSLNSTQGVVYSNDLRGIQEEEILRELSTQKVTKVEKILKFIDNX
FT                 LTETGLTKFTFSTTNLPPTLKIGYESVKVRPYIPLPLKCRNCHRLGHITKA
FT                 CKSPKLCSNCSSVEHTTDKEERSNNEFCINCRNDVNDEHNHSPLDKSCPAP
FT                 IVLKRKGITAIKVTEXVDFKEAIKIYHSXHXHKPTSYAKIVASQKTQEQNN
FT                 KNSNQKSQHQQRPIPNYDDILSDELEPSTSTKATHRQPVTEFESGDEDMEI
FT                 DRIDAYIQKITKKDVPDSDRKLXSHNKEKSVVSKPLKAKDKNEKSSINTKN
FT                 LKH"
FT   CDS           1402..4047
FT                 /product="I-7_DBi_2p"
FT                 /translation="MTLLIIQWNCNGYMNNYIHLQLILKSYMPKVICLQET
FT                 HIHSLHNIPIPPNFTIIEKNTANNSHGGVAMLVHNSIQYDRLTMNHDFDAI
FT                 GIVLHSKMKIRLITTYIPPDKSFQPYNLINMFGNPNGNTIITGDFNSWHQS
FT                 RGSTTNNRKGNIIFKYXTESNLLTLNDGSPTHFSTHNSLTHVDLTISTPNL
FT                 VPHSKWKTDEDLFGSDHFPIHISLFENVMENESYGQPRFRLDAAEWPVFTA
FT                 LTEKYRSLXTRSNGVSQEAANIIKIIRQSANISIPQSNPNFYXKKTVPWWS
FT                 RSLEELKTNKNRAWNQLKRCITTENIIHFKKTKALFRRQLKESKKIALQNF
FT                 TSEINPNSTTARMWSNINTFCGRKLKHDIHCISSPNDPSRNITGKSEIAQT
FT                 FANYWSEQAADENFSTVFQQKKSQIESSTTSLVPCAEALMIDENINYIEFS
FT                 RALNSLKGKTPGRDGISYPMLKNLALPVTKRLINLYNNILNSHIPQHFKNS
FT                 TSVSSYRPISLNPRLAKVMDKIVANRLWWFATNCKLLDSRQLGFRKGMSIS
FT                 ECLALLDHQTNAALSTRRHLSIISLDFEKAYDKIGIHTIVDELIRWRIGYR
FT                 ILRYVINFLSNRRINIKINNIXSESKPFHNGIPQGSPLSVILFLIAYNKLC
FT                 RTIAIHKEFNFFSYADDFTIVRQINKRTTHANINPLFTDILNWCSYSGAKL
FT                 SISKCKHLHICRKTNCNFRINSTAYPLNSSDHIKVLGLIITRRYRWKKHID
FT                 ALTIQISKRLNILKWLANQRYNCDTRTLIYLTNALIMSKIDYCLPFYGNRP
FT                 ASYIKKLKANYHSALRLAFGAFRTTPINNLLFEAQLMPIELRFEMNVAKMC
FT                 KALLFAANTPIQTVLQKIKKSKRTHHGRF"
FT   CDS           3950..4804
FT                 /product="I-7_DBi_3p"
FT                 /translation="QRCARHYCSQQIPQSKPSFKKLKNLNEHTTDGSKSTR
FT                 GVSYSITTETTIIKTAILPTLSSIYTAEVAAIHAARSYAVQKNKKVVICSD
FT                 SLSAVTSVTNTNNQSXYTNRIRDILNRHQPKIILMWIPGHNNIPGNDTADL
FT                 AAKEAHNFPQVMECNYNFRDTQAFIKNTFKKQMDSIWQNTSEHYKYFNPMK
FT                 LSINDYTISPEDNINRKDLTNFLRLRFGHTRYTHEHLLNKRPPPQCEHCGT
FT                 RNNVRHFLLERPLSGESPDALSPKSTDISRANDFAKAIHLYNKI"
XX
SQ   Sequence 4959 BP; 1807 A; 1212 C; 800 G; 1125 T; 15 other;
     cggagattag acgtacgttt gccatagcag agcaagtgat cgctaaactc aagttctgtt        60
     ttcaaaaaaa ccaaaacaaa atccaaaaac tccaaaaaca atttctgcac agaatccgtt       120
     acttcaacat cagaccacgg agggccgcag ccagcccgaa gtagctgcaa tgaatcgacc       180
     gccggactta agcaaccgcg cacagtgcaa cgagacacct ttctatgagt cgaagtttat       240
     tgttattact agatccgatg aaaacagttt cgaaaaagtt tcaccgtttg ttataaaaaa       300
     agtgatagat ttcacatgcg gaagcgaggt aatttcttgc caaaaaactc gagctggaac       360
     actgctagtt aaaacaaagg gattatacca agcacagcgg ttattgaact taaaagcatt       420
     ccatgatttt ccggtaactg taaccgaaca cagcagtctt aactccaccc aaggagtagt       480
     ttactcaaat gacttgagag gcattcaaga agaggaaatt ctacgagagc tttcaacaca       540
     aaaagttaca aaagttgaaa aaatcctgaa gttcatcgat aatanactta ctgaaaccgg       600
     tctaacaaaa ttcactttct caacaacaaa ccttccaccc actttaaaaa ttggctacga       660
     gagtgttaag gtgcgaccct acatcccctt gccccttaaa tgccgcaact gtcacagact       720
     gggacacata acaaaagcat gcaaaagccc aaaattatgc tccaattgtt cgtctgttga       780
     acataccacc gacaaagagg aacgctccaa caacgaattc tgcatcaact gtagaaacga       840
     tgtnaacgat gaacacaacc acagcccgtt agataaatct tgcccagccc ctatagttct       900
     taagcggaaa ggaattacgg caatcaaagt aactgagaan gtcgatttca aggaagccat       960
     aaaaatatac cattccagnc atntccacaa gccgacatca tatgcnaaga ttgttgctag      1020
     tcaaaaaact caagaacaaa ataataaaaa ctcaaaccaa aaatcccaac accaacaacg      1080
     acctataccg aactacgatg acatcttaag cgacgaattg gaaccctcta catccactaa      1140
     agcgacacac cgccagcccg taaccgaatt cgaaagtggc gacgaagaca tggagattga      1200
     ccgaattgat gcctacatcc aaaagatcac caagaaagac gtcccagact cagaccgtaa      1260
     gctangaagc cataataagg aaaaatcagt agtttctaaa cccctcaagg ccaaagacaa      1320
     aaacgaaaaa tccagcatta acacaaagaa cctaaaacac tagttatagt tcttaagtta      1380
     aaagatcgct aactcctaga tatgaccctg cttataattc aatggaactg caacggctac      1440
     atgaacaact atatacattt acaacttatt ctaaaatcct acatgcctaa agtaatttgc      1500
     ctccaagaaa cccacatcca ctccctccac aacatcccta tacctccaaa ctttacaata      1560
     attgaaaaaa acacagccaa caactcacat gggggagtag caatgctagt ccacaattcc      1620
     atacaatacg accgtctaac aatgaaccac gatttcgacg caataggcat agtcctacat      1680
     tccaaaatga aaatacgcct gatcacaacc tatatccctc ctgataaaag ttttcagcct      1740
     tataacctga ttaatatgtt tggaaaccct aacgggaaca ctataataac gggtgacttc      1800
     aacagttggc accaaagtcg ggggtcgacc acaaacaata gaaaaggaaa tattatattt      1860
     aaatatntaa cagaatcaaa cctccttacc cttaacgacg gatcgcctac ccacttttca      1920
     acncataatt cactgacgca cgttgatctc acaattagta caccaaatct tgtcccccac      1980
     tcaaagtgga aaactgacga agacctcttt ggaagcgacc attttcccat acacatatct      2040
     ctgtttgaga atgtaatgga aaatgaaagt tatggacagc caagatttag actagacgcg      2100
     gcggagtggc cagtctttac ggccctcacg gaaaaatacc gcagtctaan aacaaggagc      2160
     aacggtgtaa gccaagaagc agctaatata atcaaaatta taagacaaag cgcaaacatt      2220
     tccattccac aatcaaaccc caacttttac agnaagaaaa cagtcccctg gtggagtaga      2280
     agcctcgaag aacttaaaac taacaaaaac agggcttgga accagctaaa acgatgcatt      2340
     actactgaga atataataca cttcaagaaa accaaggccc tttttagaag acaattaaaa      2400
     gaatcaaaaa agatagcact acaaaatttt acatcagaaa ttaacccaaa ctctacgact      2460
     gctagaatgt ggtcgaacat taatactttt tgtggcagga aactgaaaca cgacattcac      2520
     tgcatttcct cccctaatga cccatcccga aacataactg gcaaatcgga aatcgctcaa      2580
     acgtttgcaa actactggtc agaacaagca gccgacgaga attttagcac agtttttcaa      2640
     caaaaaaaat cacaaataga atcgtcaact acttccttag taccgtgcgc agaagcattg      2700
     atgatagacg aaaacatcaa ttatatagaa ttctctagag cgttaaactc cctcaaaggt      2760
     aaaactcctg gccgcgacgg aatatcatac ccaatgttaa agaacctagc acttcctgta      2820
     actaaaagac tcataaatct gtacaacaat atccttaata gccacatacc tcagcatttt      2880
     aaaaatagca catcagtaag ttcataccgc cccatatcct tgaacccacg cttggcaaag      2940
     gtcatggata aaatcgtcgc aaacaggctg tggtggtttg ctaccaactg caaactcctc      3000
     gatagccgtc aacttggctt tcgaaaaggt atgtcgatat ctgagtgcct agcactgcta      3060
     gaccatcaga ctaacgctgc cctatcgaca agaagacacc tgtcaataat aagcttggac      3120
     ttcgaaaaag catacgacaa aatcggaatc catacgatag tagatgaact gatcagatgg      3180
     cgaataggtt atagaattct tagatatgtt attaactttc tcagcaacag aagaataaac      3240
     ataaaaataa ataacatttn ttcggaaagc aagccttttc acaatggcat accacaagga      3300
     tcgccgctat cagtgatact gttccttatt gcgtacaata aattgtgccg cacgattgct      3360
     attcacaagg agtttaactt cttttcctac gccgacgatt tcacaattgt aagacagatc      3420
     aacaagagga ccacccacgc aaacattaac ccactgttca cggacattct taattggtgt      3480
     agttattctg gcgcgaagct gtctatctct aaatgcaagc acttacacat atgtagaaaa      3540
     accaactgca atttcaggat caactctacc gcctaccctc ttaactcaag cgaccacata      3600
     aaggttcttg gtttaataat aacaaggaga tacagatgga agaaacacat cgatgcactg      3660
     acgatccaaa tctccaaacg gctaaacatc ttaaaatggt tggcgaacca gagatataat      3720
     tgcgacacaa ggactcttat ataccttaca aatgccctta taatgtcaaa aattgactat      3780
     tgccttccat tctacggaaa ccgccctgct tcatatatca aaaaacttaa ggcaaactat      3840
     cattcagcat taaggttggc gtttggggca tttcgcacca ctcccatcaa caatctcctt      3900
     tttgaagccc aattgatgcc gatagagcta agatttgaaa tgaatgtagc aaagatgtgc      3960
     aaggcattac tgttcgcagc aaatacccca atccaaaccg tccttcaaaa aattaaaaaa      4020
     tctaaacgaa cacaccacgg acggttctaa atccacccga ggagtatcct acagcataac      4080
     gacagaaaca acaataatta aaacagctat tctaccgaca ctcagctcga tctacacagc      4140
     agaggtggca gccatccatg ctgcgcgtag ttatgcagtg cagaaaaata aaaaagtggt      4200
     tatttgctct gactccctgt ctgctgtaac ctcagttacc aacaccaaca accaatcctt      4260
     ntataccaat cgcatccgag acatcctcaa ccgccaccaa ccaaaaataa tattaatgtg      4320
     gattccaggc cacaacaata ttcctggtaa cgacacagca gacctagcag caaaagaagc      4380
     tcacaacttc ccacaggtta tggaatgcaa ctataacttc agagacacac aggcattcat      4440
     aaaaaacacc ttcaaaaaac aaatggattc gatctggcaa aatacatcgg aacactacaa      4500
     atattttaac ccaatgaaat tatctatcaa cgattacacc atctcacccg aagacaacat      4560
     caaccgcaaa gacctcacga attttttaag actacgnttt ggacacacta gatacaccca      4620
     tgagcatctg ctcaataaac gaccgccacc ccagtgtgaa cactgcggca cgcgaaacaa      4680
     cgttcggcac ttcctcctag agcgtccgct gtccggagag tcacccgacg ccctatcccc      4740
     aaaatccacc gacatatccc gcgccaatga tttcgcgaag gccattcacc tatacaataa      4800
     aatctaaatc accataccaa atataaatga ataccttttt cccgaaaatg tgtaaataac      4860
     attgtaaata ntaaataata gcttaaggcc cagtagctat agctagtata agtggttaga      4920
     ggcaatttgc aattgtctca aaaccagaat ataaataaa                             4959
//
ID   I-7_DBp     repbase;    DNA;    INV; 3479 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3479
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 707-707 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3479 BP; 1087 A; 950 C; 534 G; 894 T; 14 other;
     gacacctcct ctkactckga tgcttctwtg ggtgatgctg gccccgagtc agctcacatt        60
     gactccctac waaamcaaaa aaaaaaaaaa caatttctmk aacatggtct ttaatatgga       120
     acataamtgg aatcwtcaac agtwammaga attacaawct cttcctgata ttctgtgcct       180
     tcaggagact cacctgccac gaactttaca aatttcaagt gcccaaaggg ctttaaaggg       240
     tacttcctga actaccccca aaacacgtgc gcaaaacaag gagctctact cataaaagaa       300
     cctattccac atctcagaaa tcaacataaa ctcagacctc ctttgcaatg gtattaaact       360
     cgaactccca aacccaattt caatcttaaa catgtacatt cctccgtgtc aaggtttttc       420
     tagcaacgat ttattccacg cgctaaacca aattactggg ccacttttgc tgctaggaga       480
     ctttaactcc tggagcccta tgtggggttc acctaacaca aactctcgtg gaaaaaaata       540
     gaacaaatca tatcttccaa caaccttgtt gtgctcaaca atggctctgg aactcacctt       600
     tccactcaca attctctgac tcatgtagat atattttaat atcccccgca atagcgcacc       660
     gctgccgttg gtcccttagt gaccaattgc acggtagcga ccattttccc atttttaaca       720
     agtttggcaa aatctgcgcc gaacttgagg caagatgggc tcctggttgc ttaaaccacc       780
     aggtcgctct tctctccaaa agtatcagag ctgctgccaa cacctccatt cctcaaacaa       840
     agcgcatccc ggaacccgca gctacagcag cttaaggact ccaaacaaaa acttttccat       900
     atcttcaaat cccaaatgac cacatctaac ctaataaact acaaaagagc aaatgccctc       960
     ttcaagaaga caatgcttct cgtaaagcgt aaagccttcg aaaacttcac ctcccgaatc      1020
     tccccagcct cctcctgtaa aaagatatgg tcagacatta aacgtctctc agggtccccc      1080
     cagtgatcat caaatgcatc aaaatcagac gacagtttgt taacagactc tttaaccatt      1140
     gccgaaaaat tcagtgaagt ctggtccaaa tatggtgcgg atgataactt cagccgggaa      1200
     tacatagccc gtaaagattc ttaccttacc tcatcctaca atcctactgc cctatcacca      1260
     acagcaaaaa ctctggattc tccttttaac atgatagaat tcgaaacggc tcttcacgca      1320
     gccgtaggta aaactcccgg ttccgataga atctcctatc ccatgttaaa acacacccct      1380
     caaagcctta aacaacgaat cctggatatc tacaactcca tgctctccac aggcagttac      1440
     ccccacactt ggagatcctc cacagtcatt cccatcccta agcctacaaa aaaacatccg      1500
     aaataaatgg gttcgcccaa tatcattaat cccatgtctt agcaaaataa tcgagaaaat      1560
     gctggccctc cgacttatgt ggtacatcaa ccgacataac ctgataaacg gcaaccaggt      1620
     tgcattcaaa agccaccaca gtaccatgga cgctctcctt aaagtccaac acttcgtgtc      1680
     gaatgccatt tcttcaagga accacgtctc catcctggcg acggatttcg aaaaggcctt      1740
     cgatcgcgtg gggctgcatg cagtgctctc tcgactccag ctttggggca ttggtccaag      1800
     gctttacaat cttgtgaaag cctttatgac gaagaggacc ttcaaagtca gagtcaacga      1860
     caaaacctcc ggagctgcta acttgtcaaa cggaatccct caagggtcac ctctatctgt      1920
     tgtcctcttc atcattgcct tcgacgaaat caacaacact ctagctagat acaaggaaat      1980
     aaaaatatct ttatatgcag acgacgccat aatctatacc agagctaaaa atctaaataa      2040
     tgtaaaaaac acattcacta aagtccttca agatttagaa gcctggggtc tacactctgg      2100
     tgcttcgctt tccattgaaa aatgcaacac tttgcacaag ttaaacattg ttgcttccca      2160
     actttggaat tcaataacaa gtctatccat cctgttccaa acttaaaaat acttgggatc      2220
     acttttgatt ccaggtttag ctttaaggat cactgtatct tgttaagaaa acaactgaaa      2280
     cccgagctaa cataatcaaa tttcttagct ccaaattctc acatatccac cctaatactc      2340
     taaccaactt aacccgtacc ctcatccttt ccaaaattga ttacggcctc cctatctacg      2400
     gttggtgcgc tacatccaac ttgaagaaaa tccaacctcc atatcactca tcagctcgtc      2460
     gttcaatcaa tgcattccca acatcaccaa tacagtgtgt tctggctgaa acaggattac      2520
     caagcattct cgatcgttta gaaatgtcga caaagagtct tattcctagg ctgctaacta      2580
     gcmctaaccg atcgctagta aaagatttta tatctacttt aagaaaaaac gcgcgcccag      2640
     aattctctca acccttcata gatgctccaa cttctcggta ctgctgggcc tgccaccgcc      2700
     caaataaaac acaaacaccc gcctccttcc accttggaaa cacatatctt ctggaataaa      2760
     caagcagcta caccatcact acaccaaaag cgacgcacca aaaaagtctt ccaatcacaa      2820
     ttcgcacttt tgagaagtca attgggccat aggatctggc tttattccga tggctctaaa      2880
     acaacactgt cgtcatcatt cgctgttgtg aagagtgact aacgtaattt tatccggcgg      2940
     gacccttccg agccttaact ccatattacc atcgaggcat ttgctgctct acaggcctgc      3000
     cgaatcgctt ccaactccaa agggaaattt gccatttgct cggacagcct ttgcactatt      3060
     tctgctctgg agcaccacag gcactcagac ccaacaatat gcgaaataca gaagattatc      3120
     gctaaataca aaacaaagat aattattgtt tgggctccta gtcaccaggg aattcttgga      3180
     aacgaacacg ccgacaaacc tctctatcga tcatctgcta gactcctgac cggtatcaag      3240
     gcccacacgt aactcaattt ttggaacatc catcctccca tcttccgtcc ttttatctcc      3300
     tacaacacca aatatacaaa aattgtacac cttttttaga aaaatacacc tccgtattta      3360
     gaattcaata ctaaatatca acgtaccagg ccgacgcact tagtatctag cgccttacta      3420
     acattaactt tagtatttaa tactagattt aatatgttaa aataaaagat aaaaataaa       3479
//
ID   I-7_DSuz    repbase;    DNA;    INV; 5383 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5383
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 614-614 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..1426
FT                 /product="I-7_DSuz_1p"
FT                 /note="leucine-rich repeats."
FT                 /translation="MDKPPDISRTSIYNKHLGEPKYIVITRTDNKSFENVS
FT                 PFLIKKTIDFACGGEVESCKNTRSGYLLVKTKNNLQANKLLRIKNMADIEV
FT                 KATEHKTLNFSKGVIYCNELRSIDETEILNELKHQKVTEVRKILKKQDQAL
FT                 TETGLIIITFQTLTLPDSLNIGYEKIRVRPYIPLPLRCRKCLRFGHPTPTC
FT                 KSPDELCKNCSEKVHTEENEKCNSEKCCINCKHMFETDAKHSPLDRSCPTF
FT                 IKQKELITIKTTQKVDHKTALELYYTRRNQHLSNSFASVLSKQQTPKTTTT
FT                 TKITPTPQQHQQRKLTSYQDLSTDTPTPTQFTNTTPPPQTSPAHQTTDVIS
FT                 MDLDPPTTSKDNMASERTQDLKLRIFSKDKNKTLTTNLKATKTNQPKNLNK
FT                 NKHINISDSESM"
FT   CDS           1475..5209
FT                 /product="I-7_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="SFTNNKLLAFKMTMKIIQWNMNGYINNYGELQTIIKK
FT                 HTPLIVSLQETHIKFTSHIPIPINYILISKNTSSSHGGVGLLAHKSLQARE
FT                 ITLSDDFDAVCIELNSKLKFRIISAYIAPNKSFSLQNLQAVLDTSHIPTLI
FT                 TGDFNGWHKNWGSNQNNSRGKILEKFITQSNYILLNDMSPTHFSTHNTLTN
FT                 VDLTFSSPMLQIDSTWRTEDNLFGSDHFPIIITLFTSNISNRQVTPRKPTF
FT                 LTDKANWLEFCKLTEEYSAQRQPSTNINKEAATIHKIILSSAHKAIPQTHP
FT                 IRKTQNVPWWNNNLSQLRVDKMKKWNDLKRNITTENILKYKKANALFRLTL
FT                 KQDKKQSINNFTSQISPETPPKTIWSNIRRFCGLNPQKNIHCIFNPTTNQN
FT                 TTHKPEIADLFCKNFSEISSDTNFTTTFIHQKQTSLNNTHTLSYIPSKRAI
FT                 EIEKPITSIEFSAALNTLKGNTPGLDRINYTMIKNIDKTTKNRIINLQNSI
FT                 LNNYIPQAYKNSLIIPIIKPNTDKTNLNSYRPISLNSCLSKILDKIIAKRL
FT                 WWFVLNDKLIQNSQTGFRKGKSAMDSLLLVDHLLARAISRRNHASIISLDF
FT                 AKAFDRIGIHSILNQLAIWKTGPKITNYIKNYMTNRKILVRINSDLSPFQP
FT                 IQNGIPQGSPLSVILFVIAYNQLTEKLTLHPNISLSAYADDFNLILKLKNR
FT                 KNININLNPIISTILDWAEYSGAKLSTTKCKHLHVCRKHNCNCTLSTGNIQ
FT                 IQNETSLKILGVHFNNKYRWNTHTELLAHSLKQSINIIKCLSSPKFNCNTS
FT                 TLLNVTKATIIAKADYGLPIYGYCPQTTLRKIKSPINTAFRTALGAFRTTP
FT                 IDNILYEARADPLEDRRDLLTTKIIKSLINAKNSPIIKILKSYRPPKRPQY
FT                 KSTIDRIIENSKAHDLPLKQATQRAQTTPPWNTDMLKIDTTLSTYNKKNTT
FT                 PQIFRKLFTEIKTKDSQKFTYIYTDGSHTNTITSLAITNETHCIKIGLLPH
FT                 YSSVFSAELLAIVEGLEILKNKRGKFCICSDSLSAIDAIKNTNNIEHYTSH
FT                 ARNLLQKFPNKFKLLWIPGHVGIPGNELADTLAKDAIKQPLITIENLNTKD
FT                 ILKYIKNTHQAKTLSYITKTSAWYQSINQLQLNSYHITKDNHLSISRLDQI
FT                 KITRLRLGHTKITHTHYIDPNHSNTCPFCNDIVSIRHLLSTCNALNIQRQQ
FT                 IFNNTNPLEALSNPTPPNISKIIQFLKNTNLYHRI"
XX
SQ   Sequence 5383 BP; 2210 A; 1430 C; 656 G; 1086 T; 1 other;
     cagtatcacc tcaaacttct tggagataag acgtgttacc tctgtgctcc cgtagtgcta        60
     atcgcaaaca gcagctcttg ctagcttacc agcaaaaaaa caaacaagtg cacaaaacaa       120
     aattcgcaac aatcaaaaac aacaaacaca acaaacacat caaacacaaa tccacgtgcc       180
     gggcgccagc ccaataaaaa caacaacaat ggataaaccg cctgacataa gtagaacatc       240
     aatatacaac aaacacctag gcgaaccaaa atacattgta atcaccagaa ccgacaataa       300
     gtcttttgaa aatgtatcac ccttcctaat taaaaaaacc atcgatttcg cgtgcggagg       360
     agaagtggag tcatgcaaaa acactcgatc gggctactta ttagttaaaa ctaagaacaa       420
     tttacaagca aacaaattac ttagaataaa aaacatggca gacattgaag taaaagccac       480
     cgaacacaag accttgaact tctctaaggg ggtcatatac tgcaacgaat tacgcagtat       540
     agacgaaacc gaaatactaa acgaactaaa acatcaaaaa gtcactgaag tgcgaaaaat       600
     cctaaaaaaa caagatcaag ctttaacaga aactggctta attataataa cattccaaac       660
     ccttactctc ccagactccc tgaacattgg atacgaaaag atccgcgtac gcccatacat       720
     cccgctccca ttaaggtgca gaaaatgcct acgatttgga cacccgactc caacctgtaa       780
     aagccccgat gaactttgca agaattgctc cgagaaagtc cacaccgaag aaaatgagaa       840
     atgcaacagc gaaaaatgct gcattaactg caaacacatg ttcgaaacag acgcaaaaca       900
     cagcccacta gaccgcagct gcccaacatt cataaaacaa aaagaactga tcacaataaa       960
     aactacacaa aaagtggatc acaaaactgc actagaacta tactacactc gtcgcaacca      1020
     acatcttagc aacagctttg catctgtcct atctaaacaa cagaccccca aaacaacaac      1080
     taccacaaaa ataacaccca caccccagca acatcaacaa agaaaactaa catcatacca      1140
     agacctctct acagacaccc ccacaccaac tcaatttaca aacaccacac cacccccaca      1200
     aacttcaccc gctcaccaaa caactgatgt tatcagcatg gatctcgacc cccctaccac      1260
     ctcaaaggac aacatggcaa gcgaaaggac ccaagatctg aaactacgta ttttctctaa      1320
     ggacaaaaac aagacactaa caaccaactt aaaagccacc aaaactaacc aaccaaaaaa      1380
     tcttaacaaa aacaagcaca ttaacataag cgactcagaa agtatgtgac acttttagca      1440
     gcagttagca aaaaacaggt actcaatcaa ctaatccttt accaacaaca aactactggc      1500
     ttttaaaatg actatgaaga ttatacaatg gaatatgaat ggatatatca acaactacgg      1560
     cgaacttcaa acaatcatta aaaaacacac accacttata gtatctttac aagaaacaca      1620
     tataaaattt accagtcaca ttcccatacc cattaactat atacttattt caaaaaacac      1680
     ctcatcttcc cacggtggcg taggtctcct agcccacaaa tcactgcaag ctcgagaaat      1740
     aacccttagc gatgattttg acgcggtatg catagaactg aactcaaaac ttaaattcag      1800
     aattatctca gcctacatcg cacctaacaa atctttctca ctgcaaaacc ttcaggccgt      1860
     actagacacc tcacacatac ccaccttgat cactggcgac tttaacggtt ggcacaaaaa      1920
     ctggggctca aatcaaaaca actcaagggg aaaaatatta gagaaattta taacccaatc      1980
     aaactatatc ttattaaacg acatgtctcc tactcacttt agcacacaca acacactcac      2040
     aaacgttgat ctaactttca gcagcccaat gctacaaatc gacagcacat ggcgaacaga      2100
     agataatctg tttggcagcg accacttccc cataataatt accctcttta cctccaacat      2160
     atcgaaccgc caagtcactc cacgtaagcc tacattttta accgacaaag caaactggct      2220
     agaattttgc aagctaactg aagaatactc cgcacaaaga caaccaagca caaacataaa      2280
     caaggaagct gcaacaattc ataaaatcat cctctccagc gcccacaagg caatacccca      2340
     aacacacccg ataagaaaga cccaaaatgt accatggtgg aacaataacc ttagccaatt      2400
     gagagtagac aaaatgaaga aatggaacga tctaaaaaga aacataacta cagaaaacat      2460
     cctgaagtac aaaaaagcaa atgcactatt cagactaaca ctaaaacaag ataaaaaaca      2520
     gagtataaac aacttcactt cccaaatctc acccgagaca cccccaaaaa caatctggag      2580
     caacatccga cgattttgcg gactcaaccc tcaaaaaaac atacactgca tatttaaccc      2640
     aaccacaaat caaaacacca cccacaaacc agaaatcgca gacttatttt gcaaaaattt      2700
     ttcagaaatt tcatccgata caaattttac cactacattc atacatcaaa agcaaacatc      2760
     acttaataac acacacaccc tgtcatacat tcccagcaaa agagcaatag aaatagagaa      2820
     gcccataaca tcaatagaat tctcagcagc actaaacaca ctaaaaggaa acacacccgg      2880
     actggacaga attaactata caatgataaa aaacatagat aaaacaacaa aaaatagaat      2940
     aataaacctg caaaactcaa tactaaataa ctacatccca caagcctaca aaaatagtct      3000
     gataatacca ataataaaac caaacactga caaaaccaac ctaaattcat accggccaat      3060
     ctcactaaac tcatgcctat caaaaattct ggataaaatt atagcaaaac gactgtggtg      3120
     gtttgtacta aacgacaaac ttatccaaaa cagccaaact ggtttcagaa aaggtaaatc      3180
     agctatggac agtctactgc tagttgacca tctattagca agagctatct caagaagaaa      3240
     ccacgcatcc atcatatccc tagatttcgc aaaagctttc gacagaattg gaatccactc      3300
     catactcaat caactcgcca tttggaaaac aggtccgaaa ataacaaact acataaaaaa      3360
     ttatatgaca aacagaaaaa tactggttcg catcaactcc gacctctccc cctttcagcc      3420
     catccaaaac ggcatacctc aaggctctcc actttccgtg atcctctttg tgatagcata      3480
     caaccaacta acagaaaaac tcactcttca tcccaacatt agcctaagcg catatgcgga      3540
     cgactttaac ttgatactaa aactaaaaaa cagaaaaaat atcaacataa accttaaccc      3600
     catcatatcc accattctag actgggccga atactctggt gccaagctct cgaccacaaa      3660
     atgtaaacac ctgcacgttt gcagaaagca caactgcaac tgcactttat ccacgggtaa      3720
     catacaaata caaaacgaaa catcactaaa aatacttggc gtacatttca ataacaaata      3780
     caggtggaat acgcacacag aactactcgc acacagcctc aagcaatcaa ttaacataat      3840
     aaaatgcctc tcaagcccaa aattcaactg caatacgtct acacttctaa acgtcacaaa      3900
     agcaaccatc atcgcaaaag cagactacgg cctcccaatc tacggatatt gcccacaaac      3960
     aacattacga aaaataaaat caccaataaa cactgccttt agaactgctc ttggcgcatt      4020
     caggacgaca cctattgaca acatacttta cgaagcacgc gcagacccac tagaagatag      4080
     acgtgacctc ctaacaacaa aaattataaa atctttgatt aacgccaaaa actccccaat      4140
     aataaaaatt cttaaatcat accgaccacc aaaacgacca caatacaaat caacaataga      4200
     ccgcataata gaaaactcca aagcccacga cctccccctc aaacaagcta ctcaacgtgc      4260
     acagaccaca ccgccctgga acactgatat gttaaaaatc gacacaacgc taagtacata      4320
     caacaaaaaa aacacaacac cacaaatttt tcggaaacta ttcacagaaa ttaagacaaa      4380
     agacagtcag aaattcacct acatttacac agatggatcg cacacaaaca caattaccag      4440
     cctcgcaatc acaaacgaaa cgcactgcat aaaaataggc cttctaccac actactcgtc      4500
     agtgttttcc gctgagctac tagcaatagt agagggactc gagatattaa agaacaaaag      4560
     aggcaagttt tgcatatgct ctgactctct ctctgccatc gacgcaataa aaaacacaaa      4620
     caatattgaa cattacactt cacacgcccg caacctgcta caaaaattcc ctaacaaatt      4680
     caaactactt tggatacccg gccacgtagg aataccagga aatgaactgg cggacaccct      4740
     agcaaaagac gcaattaaac aaccacttat aactattgaa aatcttaaca caaaagacat      4800
     actaaaatat ataaaaaaca cacaccaagc caaaacacta tcatacataa cgaagacatc      4860
     agcctggtac cagtcaatta accaactcca actcaatagc taccacatca caaaggataa      4920
     ccacttatcc atctcacgtt tagaccagat aaaaataaca agactcagac ttggacacac      4980
     caaaataacc cacacacact acatcgatcc aaaccatagc aatacctgcc cattctgcaa      5040
     cgacattgta tcaataagac acttactctc cacttgcaac gcgctaaaca tccaaagaca      5100
     acaaatattt aataacacca acccactaga agcactgtcc aatcccacac caccaaacat      5160
     atcaaaaatt atacaatttc taaaaaacac aaatttatac caccgcatat aggatgactc      5220
     tatctaagct taacaataga aataaatacc tataaaaaca taatactawa aaataatatt      5280
     atgtacaatt cgagctgaag gcccacgtcg ccattgctca atatcattac tagctcataa      5340
     ttttaattat ttgttagctc tttataaata aataaataaa taa                        5383
//
ID   I-7_DTa     repbase;    DNA;    INV; 4894 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.11, Created)
DT   30-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4894
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (30-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1096
FT                 /product="I-7_DTa_1p"
FT                 /translation="MPDPPDIWRKHPPDGLFLVATTKDDDPKPLAELSPFI
FT                 IKKTIDNTIQGEVISCRKSRDGKLIIQTKNLLQAEKLMKLYNIPSNTPYIN
FT                 IPIKITEHRSLNCTKGVIYSNDLELEKIYRYTPGQITQKTASNETGLIKLT
FT                 FKLTTLPEHIYIGYERVQVRPHIPPPMRCKTCSRIGHLASFCKDKLICSNC
FT                 GLAAHTEEGQICLNKTNCINCTEKKLLNTDHHVRDRNCPVFLSHKEVQAIK
FT                 TLNKVDNRTAWSNPTTHNDSSTYPTENHKRMRLTSYQMNPCHQARKYKTPT
FT                 RTVQQKEKPKSYH"
FT   CDS           join(1211..1789,1695..3068,3046..4728)
FT                 /product="I-7_DTa_2p"
FT                 /translation="MTLKLPNPKIVSLQETHITYYQKLPIPINFEFHHTSS
FT                 HSPDGGAAILIHKSIEHSTIPLQNTIDTVALEIKSVKKLNIVSTYIPPNRK
FT                 FTHTDLDSIVPLGNCPTLFTGDFNSWNSYWGSPTTNQRGRILGKFILDNGL
FT                 IILNNGQPTHFSTHRSLTHVDVAFCSPDLGTYYHQNVPKQQKQKRQLYTTF
FT                 CNELFARPTLEPITIKMFPSNRNKKDNFTQRFVTNKADWDKFESLTGNLNN
FT                 SIPTSSNINKEASNINKIILQSAYNSIPHTKPPKSHHNVPWWNKKLEALKK
FT                 GKMKAWRTFNREMSTNNLINYKRLNAQYRREIKISKADSLFELTSTITPQS
FT                 KPEAIWSKIRKLCGLHKATKIHAIKNDSSNNLLTSPDEIADAFATFWSLRS
FT                 EDTQFSTSFIEEKQKFISSNHVNPTSRTATFMEQDINFIEFSAALNSLKGH
FT                 TPGHDKINYPMIQHVSNSVKTRIINFFNNILRSHIPQTYKTSTIIPIHKSI
FT                 SLNPCLSKTLDKIISKRLWWFATSNKLPNSRQLGFKKGKSVMDCLLYADAL
FT                 INRALTEKRHLSIISLDFAKAFEKIGLHTITKQLSEWGCGPIITNYVANFM
FT                 SNRKIRVRANDSTSRIHPLHNGIPQGSPLSVILFLIAFNSLSEIVDKRLQH
FT                 LHTNDFNIFINLKKTKNVSINLDTLFNEINEWCQKSGATLSISKCKHIHIC
FT                 RKRLCSCQVSTQGTNIKTVNELTLLGLNFDSRYKFKPHVKKLQKSIDKSLN
FT                 IIKCLSSRKYNSHPHTLIEIVRSLCISKIDYALPIYGTSTKATIKPIKTLL
FT                 NSALRTALGAFCSTPTYNLYLEANIQTIENRTEYLKAKSIHTILQAKDTPL
FT                 NQIIQRIYKKKNKKYRKSTINKCINSCQHLDIPISPPHKLKPSKPPWLMDT
FT                 SLIDIQLSSAKKSSTNKETYTQKFLDIKNNLTNKNFNFLYTDGSKSQEIIG
FT                 LAVTSEEEVIKKAILPNYSSVFTAEAIAILEAIKIATKKREKTCICSDSLS
FT                 TLEAILNINNESFYIATIRDLLIRNTTKIKLLWVPSHIGIKGNEYADAAAK
FT                 DATVSPLITIPNVNRTDINKLLKTNLLKNQSNLLDKASPWYKNISLSTKNI
FT                 NDYTKNSQTSNLPRRELTKIIRLRLGHTRLTHEYRFSQPINSQCRFCTTDT
FT                 ISISHIFNDCTAFQTHRPSNPNIKLTDLLANPSFENIQQILNFLKSTNLLQ
FT                 LI"
XX
SQ   Sequence 4894 BP; 1885 A; 1259 C; 672 G; 1077 T; 1 other;
     cagttcacac tcgacagcct aagccatcgg acgtgttctt ccgcgaaacg taaaagtacc        60
     gcaacaaacc aacacaaaat caaagcaaac gcaacgatag tgatccctta tctatttctc       120
     gaacagtgct acagaaaatt ttggcagcct ttaagaagcc ttaaagtttg ttgaccccat       180
     catgcctgac cctccagaca tctggaggaa acatcctcca gacggattat tcctagtagc       240
     gactacgaaa gatgacgatc caaaacctct tgctgaactc tcaccattca tcattaagaa       300
     aacaatagac aacacaatcc aaggagaagt cataagctgc agaaaatcca gagatggaaa       360
     acttataatt caaaccaaaa acctgttaca agctgaaaaa ttaatgaaac tttacaacat       420
     accctcaaac accccatata tcaatatccc aataaaaatt acagaacacc gaagtcttaa       480
     ctgcacaaaa ggtgtgattt attcgaacga tctagaactg gaaaaaattt acagatatac       540
     ccctggtcaa atcacacaaa aaacggcaag caatgaaaca ggccttatta aactaacatt       600
     taaattaacc actctcccag aacatattta cataggatac gaaagagttc aggttcgtcc       660
     ccacatccca cctccaatgc gctgcaaaac atgctcgaga attggacacc tcgcaagctt       720
     ttgcaaggac aagctaatct gctcaaactg cggccttgca gctcacacag aggaaggaca       780
     aatatgctta aataaaacaa actgtatcaa ttgcaccgag aaaaaactac ttaacacaga       840
     tcatcacgtt cgcgacagaa actgtccagt cttcctatca cacaaggaag ttcaagcaat       900
     taagacctta aataaagtgg acaacaggac agcctggtca aatccaacca cccacaacga       960
     cagcagcacc tacccaacgg agaaccataa gcgaatgcgt ctaacttcgt accagatgaa      1020
     cccatgtcat caggctcgga aatacaagac cccaaccagg accgtacaac aaaaagaaaa      1080
     accaaaatcg taccactaaa cacttcaaat agaacaaaaa gactattaaa aaatgaccaa      1140
     aactctgtat tgactagatc aaaacttaaa gccctttcct cctccaatca aacacaaaac      1200
     caaaactaaa atgaccctta aacttcctaa tcctaaaatc gtttccctcc aggagaccca      1260
     catcacttac taccaaaaat taccaatccc aataaacttc gaatttcacc atacatcctc      1320
     gcacagcccg gatggcggtg cagcaattct aatacacaaa tcaatagaac actcaacaat      1380
     cccgcttcaa aacacaatcg acaccgtagc acttgaaatt aaatctgtta aaaaactcaa      1440
     tattgtttca acatacatcc ctccgaacag aaagtttact cacacagacc tcgactcaat      1500
     agttccttta ggaaactgcc caacattgtt tacaggagac ttcaatagct ggaacagcta      1560
     ctggggatcc cccacaacca atcaaagggg aagaattctt ggaaaattca tccttgacaa      1620
     cggcctcatc atccttaaca acggtcaacc aactcacttc tcaacccata gatcactcac      1680
     gcacgtcgac gtagcttttt gctcgcccga ccttggaacc tattaccatc aaaatgttcc      1740
     caagcaacag aaacaaaaaa gacaacttta cacaacgttt tgtaacgaat aaagcggatt      1800
     gggacaaatt tgaaagcctt acaggcaacc tcaacaattc catcccaacg tcttcaaata      1860
     tcaacaagga agcaagcaat atcaacaaaa tcattctcca aagtgcgtac aacagtatcc      1920
     cacataccaa acctccaaaa tctcaccaca atgtcccctg gtggaataaa aaactagaag      1980
     ccttaaagaa aggaaaaatg aaggcctgga ggacctttaa tagagaaatg tcaacaaata      2040
     acctaattaa ttacaaaaga ctaaacgccc aatacagaag agaaataaaa ataagcaaag      2100
     cagacagcct gtttgaactc acctctacaa tcacaccaca atccaaacca gaagcaattt      2160
     ggagcaaaat aagaaaactc tgcggccttc acaaagccac aaaaatccat gcgattaaaa      2220
     acgatagtag taacaacctt ctaacctccc cggacgaaat tgcagacgct ttcgcaacat      2280
     tctggtcgct tcgctcagag gacactcagt tctccacgag cttcattgaa gaaaaacaaa      2340
     aattcatctc atccaaccac gttaacccca caagcagaac agccaccttt atggaacagg      2400
     atataaactt catcgaattc tcagcagcct taaacagcct aaaaggacat acgccaggac      2460
     atgataaaat aaattaccca atgatccaac acgtctcaaa ctcagtaaaa actagaatca      2520
     ttaacttctt taacaatatc ctaagatctc acattccaca aacctacaaa acaagcacca      2580
     taattccaat acacaaatca atctccctca atccctgcct atcaaaaacc ttagacaaaa      2640
     tcatttcaaa acggctttgg tggtttgcta catccaacaa gctaccaaat agtcgtcaac      2700
     ttggattcaa aaaggggaaa tctgttatgg actgtctact ttacgcagac gcgctcataa      2760
     acagagccct tacggaaaag agacacctat ccatcatatc cctcgacttc gccaaagctt      2820
     ttgaaaaaat aggtcttcat acaataacta aacaactctc ggaatggggc tgtggcccta      2880
     ttataaccaa ctacgtcgca aactttatgt ccaatagaaa aattcgggta agagccaatg      2940
     atagcacgtc gaggatacac ccactacaca acggcatccc gcaaggatct ccactttcgg      3000
     tcatcctatt cctgattgcg tttaacagcc tctcagagat tgtagacaaa cgacttcaac      3060
     atcttcatta atctaaagaa aaccaaaaat gtctcgataa atcttgatac tctttttaat      3120
     gagattaacg aatggtgtca gaaatcaggg gccacgctct ctatctcgaa gtgtaagcac      3180
     atacacatat gcagaaagag actttgctca tgccaggttt ctacacaagg tactaacatc      3240
     aaaactgtta atgaactgac cctattaggc ctaaatttcg actccagata caaattcaag      3300
     ccacacgtta agaaattaca aaaatcaata gacaaatcac taaacataat aaaatgctta      3360
     tcgagcagaa aatacaatag ccacccccac accttaattg aaatcgttag aagcctatgc      3420
     atctccaaaa tagactacgc tctgcccata tacgggacct caaccaaagc tacaataaaa      3480
     ccgattaaaa ctctactcaa ctcagcccta agaacagcac taggagcctt ttgctctacg      3540
     cccacataca acctctacct tgaagcaaac atccaaacaa tagaaaacag aaccgagtac      3600
     ttaaaagcaa aatccattca caccatttta caggccaaag acacccctct aaatcaaatc      3660
     atacaacgga tctacaagaa gaaaaataaa aaatacagaa aatctacaat caacaaatgc      3720
     ataaatagct gtcagcattt agatatccct atctcacctc cccacaagct caaaccatca      3780
     aaacctccct ggcttatgga tacaagccta atagatatcc aattaagcag cgccaaaaaa      3840
     tcatccacaa ataaggaaac ttacacacaa aaattcctag atatcaagaa taacctgacg      3900
     aacaagaatt ttaacttcct ctatactgat ggatccaaaa gccaagaaat aattggccta      3960
     gcagttacat cagaagagga ggttattaaa aaagccattc taccgaatta ctcatcggta      4020
     tttacagcag aggcaattgc aatcctggaa gcaattaaaa tagccacaaa aaaaagggag      4080
     aaaacctgca tttgttcaga ttctctttca acattggaag ctattctaaa cattaacaat      4140
     gagtcattct atattgcaac gatccgagat ttactcataa gaaacactac aaaaatcaaa      4200
     cttttatggg tccctagtca cattgggata aaaggtaatg aatacgccga tgcagcagct      4260
     aaggacgcaa cagtatcacc cctaatcacc atcccgaatg taaaccgcac cgacatcaat      4320
     aaactcctaa aaaccaacct attgaaaaat cagtcaaatc ttctggataa agcgtcccct      4380
     tggtacaaaa acataagtct atcaacgaaa aacattaacg actacaccaa aaattcacaa      4440
     actagcaact taccaagaag agagctaacc aaaatcatca gacttcgcct aggacacaca      4500
     agactgaccc atgaataccg attctcccaa ccaataaata gccaatgccg attctgcacc      4560
     accgacacca tatcgatctc acacatcttc aacgactgca ccgcttttca aacacataga      4620
     cctagtaacc caaatataaa actaactgac ctactagcta atccttcatt tgaaaatatt      4680
     caacaaatcc ttaacttcct aaaatcaacc aacctactac aactaattta aattgtcaac      4740
     mtctcttccc aaaatgtaaa gaatagtcaa taagtaaact gtaaaaataa tctgatatcc      4800
     cggccgaaag tctttgcaac tatggccggt tcttttcctg ttccccaagt ttaaactttg      4860
     ggctacagtg tacaataaat aaataaataa ataa                                  4894
//
ID   I-7_LMi     repbase;    DNA;    INV; 4277 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4277
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3140-3140 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1272
FT                 /product="I-7_LMi_1p"
FT                 /translation="MMALKVLQWNARSANSNRESLQRELFVSQPDIVLLAE
FT                 TWFKFEQRVRFPNYSIIREDRPDGWGGVAILVKHSLPHKRHPLRVRSANIE
FT                 SVAVHVQTARKNFTVVSLYHAPRHSIVEEDWRHLIRQLRPPFIIAGDFNSH
FT                 HVAWGGDVTDRNGRTLMSLIEDNNLVILNDGTPTMVSSPFRRPSAVDVTLC
FT                 SPCFTELCNWRVKTDPMGSDHHPIEFQINVNVNTKQIYYANSRWKIKEAKW
FT                 DAYRDTVRRELANTSRDLPVEDAYQVLVNAINAAADVSIPKKKEFTVVKHR
FT                 SPPWWNPECSREVASADSL"
FT   CDS           join(1560..1892,1768..2460,2456..3907)
FT                 /product="I-7_LMi_2p"
FT                 /translation="RPHHVLLRPFSKEDLHEAIXSSSDSCPGIDCIHYSML
FT                 ENLPEEAKELLISIFNRCWMEQDLIATWTTQVINSNSEKWQRSKCGLKLST
FT                 DCSVVMCCKNAGTHGEKEAGMVALIPILKSGKDPNAASNYRPIALSSCVVK
FT                 TLERMVKKRLEWWLEKNNLLPRSQYGFRKGKGTMDNLFSLTVDITSAFQMK
FT                 QTVIAAFLDVKGAYDHVQIPILLDKLAGFGIPSRMIYGISTLVAKRTIYVR
FT                 YQGNMMGPFLVSQGLPQGAILSPLLYTLYTHDLERVIMPPTKILQYADDLC
FT                 VYSTADSYHQAKTALLSTIAHIDEWLSTNGLEISAEKSVIVPFHKSTLNSI
FT                 HRWSHYVWNVHFPDKTQARFLGMIFDSRLSWAPHIRATVTKCEEGLNVIRS
FT                 LTRVWWGAHQSTLLTMYRGIIRSRLDYGCHLYHNAPKVHLTKLDTLQYRAI
FT                 RTCLGAMRSTPTNALLVEAGEMPLSIRRQMLSDKFYFQGMAFMDSSVCRNR
FT                 DTIYRLWIASYRRNIPPAICTSFDTWSPMIRSLRCSPHPPPFEYDLRTLGC
FT                 QIPVFYFNMTCLGSNTVNNGFSRLVAAQWPDFLCVYTDGSKIPQEECTGCA
FT                 FFCPQIQIRRTFKLPTNTSIFTAETVAILEALRFVSTISFPKILIVSDSQS
FT                 VLQTLQHRRWNKKTNSYILDVISAYIRCTNTGRTVNLLWVPSHAGICYNEE
FT                 VDALAKQAASLGTVLDLQLPYTDFLSAVKEYAKQQWQQMWNVSQXTKGASY
FT                 AVLQPRISTQPWFMRTHLDRSAISTIIRLRFNHASYPKHLHRINVYDSAAC
FT                 ECDPETEADVNHILFRCPKFDRNV"
XX
SQ   Sequence 4277 BP; 1199 A; 1015 C; 907 G; 1148 T; 8 other;
     aatgcgcccg gcagacaagc accgcttacc ggctcccccg gcggcaggcg gaagtcaacc        60
     gacgcaataa tgtacatgag tggtctcagt accgcagctc gttgtatccg acaacamtca       120
     gtcactctat agccaaaatc cttatcagcc gttgttcaca gattggcacc cccacaagca       180
     ccgattcaac ggcagcstac agggcatgct gaactcatcg ataagataat aaatgtaatt       240
     gatattgtca tgaaaaatat gagacaaaac agtgccatga atgactccga tatccggcat       300
     ctcgtcacgg gcatatttca atctctctct gcctaaatta tgatggcttt gaaagtcctt       360
     cagtggaacg cgagatcggc taactctaac agagaaagct tgcaamgaga attgttcgtc       420
     agccagccgg acatcgtttt gttggccgaa acttggttca agttcgaaca aagagttcgc       480
     tttccaaatt attccatcat aagagaggac cgtcccgatg ggtggggcgg cgttgctata       540
     ttagtaaaac attcgctgcc gcataaacgg cacccgctac gcgtacgcag cgccaacatt       600
     gaatcagtcg ccgtgcacgt acaaactgcc cgcaaaaact tcactgttgt ctcgctgtat       660
     cacgctcccc gccatagtat cgtggaagaa gattggagac atctaatacg ccagcttcga       720
     cctccattta ttatagcggg agactttaat tcccaccatg tagcgtgggg aggagatgtg       780
     acggacagga atggcaggac tttgatgagt ctgatcgaag acaacaacct agtgatactc       840
     aatgacggca ctcctactat ggtgtcatca cctttccgtc gaccttctgc agttgatgta       900
     acgctctgct ccccctgttt cactgaacta tgtaattggc gcgttaaaac agatccaatg       960
     ggatccgatc atcacccaat agagttccag atcaatgtca acgttaatac taaacaaata      1020
     tattatgcta acagtcggtg gaaaatcaaa gaggccaaat gggacgcata tagggacaca      1080
     gttcggcggg aactcgcaaa cacgtcacgt gacttaccgg ttgaagatgc ataccaagtt      1140
     ttagtcaatg ctataaatgc cgctgcggat gtcagtattc ctaagaagaa agaatttact      1200
     gttgtgaagc accgttcccc cccttggtgg aatcctgaat gctctcgaga agttgcaagc      1260
     gcagactcgc tctgaaaacc tatcgtcaaa atcctatgtt ggaaaatttc ctcattgtga      1320
     gaaaagtgaa tgcgcgagtt agaaaattcc tgaagaagac gaaaaggaca gctggataaa      1380
     attttgctcc tccctcacaa atgaaattac tatggcaagc atctggcaca agacaaaggc      1440
     ttttagaaca aaccaactgc cctcccctct cctgctaccg cggactggtt agagggattt      1500
     atagcaaaac tcgctcctcc tacggttccg tttgcaaatc ttccactccc tcttgctgaa      1560
     gaccgcatca tgttctcctt cgtcctttct cgaaagaaga cctccacgaa gccattmaat      1620
     catcgagcga cagctgtccc ggcattgatt gtattcacta ctcaatgtta gaaaatctgc      1680
     ctgaggaagc gaaagaattg ctgatatcta tttttaaccg gtgttggatg gaacaagatc      1740
     tcatagccac atggacgact caagtaatta attccaattc tgaaaagtgg caaagatcca      1800
     aatgcggcct caaactatcg accgattgct ctgtcgtcat gtgttgtaaa aacgctggaa      1860
     cgcatggtga aaaagaggct ggaatggtgg cttgaaaaga ataacttgtt acctcggagt      1920
     caatatggct tcaggaaagg caaagggacg atggacaatc tcttttcgct tactgtggat      1980
     atcacttcag cctttcaaat gaagcaaaca gtgatcgctg cttttctcga cgttaaggga      2040
     gcttatgacc atgttcagat accgattctc ttggacaagc tggcagggtt cggaattcct      2100
     tcacggatga tttatggcat cagtaccctg gttgctaaaa gaacgatcta tgtccggtac      2160
     caaggtaaca tgatgggacc ttttcttgtc tcccagggct tgccacaagg tgcgatttta      2220
     agcccccttc tgtacactct gtatacgcat gacctagaac gcgtgataat gcctcccaca      2280
     aaaatcttgc agtatgcaga tgatttatgt gtctattcta ctgctgattc gtatcatcag      2340
     gctaaaacgg cattactctc taccattgca cacatcgatg agtggctatc tactaatggg      2400
     ctggagatat cggctgagaa atcagtaatc gtcccatttc acaagtcaac actgaattca      2460
     tagatggtca cattacgtgt ggaacgtaca ctttccagat aaaacccaag cacgtttcct      2520
     ggggatgatt ttcgactctc ggttaagctg ggcgcctcat atcagagcca cggttaccaa      2580
     gtgtgaagag ggcctaaatg taatccgatc actcacccgg gtgtggtggg gtgcgcacca      2640
     gagcacttta ctcaccatgt atcgagggat tattcgatct cggcttgact atggctgtca      2700
     tctgtaccac aatgcaccga aggttcatct cacgaaactc gatactcttc agtatagagc      2760
     catccgaacc tgtcttggag ccatgcgatc gacscccacc aacgcccttt tagtggaagc      2820
     aggagagatg cccttgagca ttaggcgcca aatgttgtca gataaattct actttcaagg      2880
     matggctttc atggacagtt cagtctgcag aaacagagac accatttatc gactatggat      2940
     tgcctcttac agaaggaata tacctccagc catttgtacc agcttcgaca cttggtctcc      3000
     tatgatacgt tctctgcgat gttcaccgca tccgcctcct tttgaatacg atctacgaac      3060
     acttggctgc cagattccag tcttctattt taatatgact tgcttaggaa gtaacactgt      3120
     caataacgga ttcagtcgcc tcgttgcagc wcagtggcct gattttcttt gtgtatatac      3180
     agatggatcc aaaattccgc aagaagagtg tactggatgt gcctttttct gccctcagat      3240
     tcagattcgg agaaccttca aactgccaac gaatacctct atatttacgg cggagacagt      3300
     ggcaattctg gaagcactta ggtttgtttc taccatttcc ttcccgaaaa tattaattgt      3360
     gtctgactct caaagtgtcc ttcaaaccct acaacaccgg agatggaaca aaaaaaccaa      3420
     cagctatatt ctggatgtga tttcggcata tattcgctgt acaaatacgg gacggacagt      3480
     taatttactg tgggtgcctt ctcacgctgg tatctgctat aatgaggaag ttgatgcatt      3540
     ggctaaacaa gcggcatcct taggcactgt cttggaccta caactaccat acacagactt      3600
     cttatctgcg gtcaaggaat acgcaaaaca acagtggcaa cagatgtgga acgtttccca      3660
     asaaacgaaa ggcgcttctt acgctgtgct gcaacctcgg atttctacgc agccgtggtt      3720
     tatgaggact catctggacc gatccgcgat ttctaccatc attcgtcttc gcttcaatca      3780
     cgcctcttat ccaaaacatc tacatcggat caacgtctac gattcggcgg catgtgagtg      3840
     tgatcctgaa acggaagctg atgtcaacca catcctgttc aggtgcccca aatttgaccg      3900
     gaacgtttga acttcctgca gacattggtg aagatgggat atccccttcc ccagtcagct      3960
     tcttcccttt tgtttacaaa agacattcgt gtatataaaa tcataattaa gtttattaag      4020
     atcactgtac acaatctata agcatcaagt gtgttggtaa tataaggttt tgcttgtgaa      4080
     tatgtgaaaa tgttccaaca ttatttaaat tgtaatgtaa tgcagttttc gctttgtttc      4140
     cactttccca ttttgacaaa atgtacttct gttttgtctg tttatttaaa tatatgtaca      4200
     tttccactgt gtgttgtaga tggccacatt gagttaacac tcagaaggcc aaataaatga      4260
     aaaaaaaaaa aaaaaaa                                                     4277
//
ID   I-7_RPr     repbase;    DNA;    INV; 3767 BP.
XX
AC   .
XX
DT   11-MAR-2013 (Rel. 20.10, Created)
DT   11-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   I-type non-LTR retrotransposon: consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3767
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3465-3465 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3609
FT                 /product="I-7_RPr_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="LSETWLKNNKPFHISGYSTVRADREGGYGGSCILIRN
FT                 KIYFSELSFNRKFNNRFIQTCGITLNIQNTELKILSLYCSPKHKLSSDFWV
FT                 SLMRSVKHPVLICGDXNAHHXSYGCAFGDYEGRQXLDAINSEDLCILNDGS
FT                 PTLFSRLDWRPSAIDISLCSPPLVTRCEWKVIEEPFGSNHLGIRIDVDKTN
FT                 CQIPANQNPHFKKWKLKSANWEKYSLLSDQFLXNRCLSXEXSXNYNSFISA
FT                 ILKAAEXSIPQAKPYKGCKPKFLKKXWWDDECDEVRNDNIQAFKQFKRFPT
FT                 LSNFINSRRCTAICRKIYKSKKQTKWVEFCNSFNAQTPIKQIWDGVRALSR
FT                 GGPSPXSDGKWLPDFLDSLTPETVPELXPEIPPRPHRISXPFSYGELLHAL
FT                 KTNANPPGVDTIHCPMLFHLPDAGKKVFLRIINDIWINHISVEDWSKQIAV
FT                 PLLKPNKDPSEFTSHRPIALSSCVCKTFERLIKTRLEWWIEAEGKLPSHQT
FT                 GFRKKRSTQDALSNFVMDIHSGFSDNMFTVAANVDLTXAYDNVSISVLVKK
FT                 MINMGVPSRITTHIYXLFHERLISVRHKGKTYGPRHTHNGLPQGAVLSPIL
FT                 FNLYTADMCTTLCPSIKISQFADDIILYSKAKSLKAATDALDTAMYAFNDW
FT                 CISVGMSISDSKSSVTIFTRRRKYNATSPVVLGRCSLRLEPVMKTLGMYLD
FT                 GKLLWRTHIEYLIAKCEQSLNILRFMNHKMYGADIKISLMIYRQLIRSRID
FT                 YGCFLYGDSAPTHLQKIDRIQHKALRTCLGALNSTPINALLTEAKEPPLKI
FT                 RRNLLASRYIADRLPLLNQPVIQKISRLAPRILTESYWYKKSTPILVHQFW
FT                 SLSQFMLSLHRSTHLPTFSFDLECTLGAPECVITNFYQYDKSIPESANNEY
FT                 LSAKLNARFPSAYFLYTDGSKSPEGVGCSVYDPQTNLSRLYKLHRHASVFS
FT                 AELTAINKCANLVASTEAQTVVILSDSKSVLNKLKCPGHKADFTVLETVHL
FT                 LKRAGLSGKTVRLIWIRGHSGITGNEIADSKAKEAIRLENLKLEKLLPSDI
FT                 KNFSKRSYYRAWSIDYEKSKYAKGKFYTSLQPTIPKKPWYSDFAEGRKFTT
FT                 TLIRLRFNHNFSPHHLSRIGISVPPICSCPSDTIIDANHLILDCNSHQDDR
FT                 DKLWNAVIKAKCPLPANLHTILTEPIFETYLAIFQFITKNKIKL"
XX
SQ   Sequence 3767 BP; 1197 A; 897 C; 708 G; 947 T; 18 other;
     ctgtctgaga cttggctgaa aaataataaa ccttttcata tctctggcta ctctacagtc        60
     cgagctgatc gggaaggtgg ctacggaggt tcctgcatat taattagaaa taaaatatac       120
     ttctctgagc ttagttttaa ccgcaaattt aataatcgct tcattcagac atgcggaatt       180
     actttgaaca tacaaaatac agaactaaaa atcctttcct tatattgttc accwaaacac       240
     aaattatctt ccgatttctg ggtttcatta atgaggagcg ttaaacaccc tgtccttatc       300
     tgcggcgact tkaatgcgca ccatcakagc tatggatgtg cgttcggtga ctacgaaggc       360
     agacagmtgc tagacgcaat taattcggaa gacctttgta ttttgaatga tggatccccc       420
     acactattca gtagattgga ctggcgacct tccgcaattg atatttctct gtgctctccc       480
     cccctagtaa ctagatgtga atggaaagta attgaagaac ctttcggatc caaccatctg       540
     ggcatacgca tagatgtaga caaaactaat tgccaaatac cagccaatca aaacccccac       600
     tttaaaaaat ggaaattgaa atccgcaaat tgggagaagt attcattgct ktccgatcag       660
     tttctcasca ataggtgtct ctccwccgaa cmctcckcta attacaacag ttttatcagt       720
     gccattctca aagccgccga akattcgata cctcaagcca agccttataa gggatgtaaa       780
     ccaaaattcc tgaaaaagsc gtggtgggac gatgagtgcg acgaggtcag aaatgataac       840
     atacaagcat tcaaacaatt taaaagattc ccgactctct caaactttat caacagcagg       900
     agatgtacag cgatatgtcg caaaatttat aaatctaaaa agcaaactaa atgggtcgag       960
     ttctgtaact cgtttaacgc tcaaacgcct ataaaacaaa tttgggatgg ggtgcgggcg      1020
     ctcagtcgtg ggggcccttc ccccmaaagt gatggtaaat ggctcccaga tttcctagat      1080
     tctcttaccc cagaaacagt acctgaacta sctcctgaga tccccccacg cccccataga      1140
     atcagtgkcc ctttcagcta tggggaactg ctccatgcac taaaaacaaa tgcgaatcct      1200
     cctggagtgg acaccataca ctgcccaatg ctctttcacc tgcctgatgc agggaaaaag      1260
     gtattcttgc gaatcatcaa cgatatatgg atcaaccaca tttcagttga agactggagt      1320
     aaacaaattg cggtacccct gctaaaacca aacaaagacc cgtctgagtt tacgtcacac      1380
     agaccaatag cgctatcatc gtgcgtgtgt aagacctttg aacgcctaat aaaaacgcgt      1440
     cttgagtggt ggattgaagc agaaggcaag ctcccgagtc atcagactgg gttccgtaag      1500
     aaacgaagca cacaggatgc gctctccaac ttcgtaatgg acatccatag tggtttctca      1560
     gacaatatgt tcacwgttgc tgctaatgtg gatctaacca awgcgtacga taacgtcagc      1620
     atctcagtct tggttaaaaa aatgataaac atgggcgttc cttctcgtat aactactcac      1680
     atctatwacc tgtttcatga acggctgata tcagtacgtc ataaagggaa aacatatggg      1740
     ccacgtcata cccacaatgg attaccacaa ggggcggtac ttagtcccat tttgtttaac      1800
     ctatatacgg cggatatgtg tacgacgctg tgtccttcca tcaaaatttc ccagtttgca      1860
     gatgatatca tcctatacag taaagcgaag tcactcaaag cagccactga tgctctggat      1920
     acggctatgt acgcttttaa tgactggtgc atcagtgtag gcatgtctat ctctgatagc      1980
     aagagcagtg taaccatctt cacgagacgt agaaaatata atgcgacatc cccggtagtt      2040
     ctcgggagat gcagtctacg actagaacca gtgatgaaaa ctttgggaat gtatttggat      2100
     ggaaaactcc tctggaggac tcacatagaa tatctcatag ctaagtgtga acagagtctg      2160
     aatattttga gatttatgaa tcataaaatg tatggagcag atataaaaat atccttgatg      2220
     atataccgtc agctaattcg ctccaggatt gattacggct gctttctcta tggggattcc      2280
     gctcctacac atctccaaaa gattgaccgc atccaacaca aagcccttcg tacatgcctg      2340
     ggcgctctca actcaacccc cattaacgcc ttactaacgg aggcaaagga acctcctttg      2400
     aaaataagaa ggaacctact agcctcgcgc tacatcgctg acagactgcc cttgttgaat      2460
     caacccgtca ttcagaaaat aagcagacta gctccccgaa tcctcactga aagttattgg      2520
     tataaaaaaa gtacaccaat tcttgtacat cagttctggt ctctgtcgca attcatgctg      2580
     tccctacacc ggagtaccca tctcccaaca ttttcttttg accttgagtg tacactggga      2640
     gctccagaat gtgtcataac taacttctac cagtacgata aaagtatccc tgaatcggca      2700
     aataatgaat acttatcggc aaaactaaat gccaggttcc caagtgcgta cttcctctac      2760
     actgatgggt ctaaatcccc tgaaggggtg ggatgttcag tgtatgaccc gcaaaccaac      2820
     ctcagtagac tatataagtt acaccgccat gcctcagtct tttcggctga actcactgcc      2880
     atcaataaat gcgcaaatct agtggcctcg acagaggcac aaacagttgt catactttct      2940
     gatagcaaga gtgtgctcaa caagcttaaa tgccccgggc ataaagccga tttcacggtg      3000
     ctcgaaactg tccacctcct gaagagagcg ggtcttagcg gaaagacagt tcgattgata      3060
     tggattaggg gccactcagg gataactggc aatgaaattg cagactctaa ggcaaaagag      3120
     gcaatacgcc tggagaatct aaagctcgag aaactgttac cttcagatat aaagaacttc      3180
     tctaaacgtt cctactacag ggcatggtct atagattacg aaaaatcaaa atatgccaaa      3240
     ggtaaatttt acacttcact gcagccgaca atacctaaaa aaccgtggta ctctgacttc      3300
     gcagaaggta gaaagttcac tactactttg atacgactgc gcttcaacca taacttctcg      3360
     ccccaccatc tcagccgtat aggaatttca gtccctccaa tttgctcttg cccttctgat      3420
     acaattatag acgccaacca cctgatcctc gattgcaata gtcaccagga tgatagggac      3480
     aaactgtgga atgcagtcat caaagcgaaa tgtccacttc ctgccaacct gcataccatc      3540
     ctcacagaac caatattcga aacgtatctg gctattttcc aattcattac caaaaacaaa      3600
     atcaaacttt gaaaataaaa ataaaaacat aaaacataac agcaactaaa acaaaaataa      3660
     caatagtact catcataaca catcccatta aataatacat tagtacatcc ctggctaatc      3720
     tgcacagaca ggaagccaac aaacaaamaa aaaaaaaaaa aaaaaaa                    3767
//
ID   I-80B_AAe   repbase;    DNA;    INV; 7481 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-80B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7481
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1351-1351 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >97%
CC   identity. The consensus is >77% identical to I-80_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           1001..2629
FT                 /product="I-80B_AAe_1p"
FT                 /translation="MAASSSGPPPTSWGDGILDFPTLGRVDGTFTNATLPS
FT                 YMDPEGMYGELHLLRISGVNGPLPNRPFQIRRSVEKFVGGKIEGAFPEANK
FT                 ATYALKVRNKRQFDQLLTMKKLNDGTAITITEHPTLNSIRCVVSCRDVINM
FT                 SDDELLEELKEQGVKEVRRITKKNGQSRENTPAIVLTCHGTIRPEVIEFGY
FT                 IRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKSATCGTCSRNHPISENKECN
FT                 TEQFCKTCDSNDHRISSRSCPLWQFENTVQRVKVDQGISYPAARRIVEQNR
FT                 GGKSFANVVGPPPKDSLQVTNERIDQLTAVLASKDAEIAELRAALVTSETP
FT                 PAVINHEIESLKTIVANQARQIQLLTDQISVFLKAVMPAANLSASSTNPMP
FT                 TSVTPTITSVSATSRPPTTTPVPINIPIAAAPVDTVSAVVSKTEPTVQLID
FT                 PLLETVFTDSDSPSAELSTNEEFFSPRTEKILSSPSTPKPTRLKATLPVTA
FT                 RINTDPIMTRNKRTISTLSRTENLSQQQKKSKHKSSSDSLGAIPKSR"
FT   CDS           2633..7147
FT                 /product="I-80B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="DHQPYFIFTPPPQRNIITNHTSPSRYELPNQQRNAEH
FT                 MASGRLGTGELEALSQPESPGRPWHLANHYDPSILLDSRGASVPEVLPQPE
FT                 SLGRLRHLGSDADEELRQNYRCPAISPGSRGTVGADVSHTGTGGLPSAPGG
FT                 DLDEGSLAHTPTTLDDVGSEGMQTVGTRRALPPTPKDYVGSEVVYNQVNVQ
FT                 APNSSNASSSNNKKRLLSPLATPFFPSVGTSLHSVGSSSGPAVCGALSCSA
FT                 TNDENEVPTRSFLSTVESSSTLVLSPLRRLTGDVLDNSYSDTTHYQSSTAN
FT                 ISYSIPTLPKSSKFCLQWNMNGFLNNLADLELLVSYDPPWILALQEVNRVT
FT                 IEQLNRSLGGKYVWTSKREGNIRRSVALGILKSIPFTFLDIDSQLPVVGVK
FT                 LHGSITISVACLYLPCGNIPDLRGTVENLIRQLPEPRMIVGDLNAHHPAWG
FT                 GLRSDARGIMLLDLLEDSDLTILNDGSPTFFKGYYSTAIDVSAVTRSEIRR
FT                 FHWNVNSDPCGSDHHPLLISVAAEAPATTRRPRWLYDQADWAAYNNNICAS
FT                 ISNHQPSSISEFSAILTQAASVSIPKTSNTPGRKALPWWSPEIKKAIKRRR
FT                 KALRAVKRLDLNHPNRAAALDRYRSQRNECRQVIRDAKRACWEKFLDSINA
FT                 SQSTSDLWAKVNALNGKRSATPPTLLIDGNNTADPTVIANGLGKYFASLAA
FT                 FGSYEPEFVRRSGATAGDIINFNVPASNSQLHINLPFSAGELQHALSRSNG
FT                 KSAGPDDIGYPMLKKLEGPGKLVLLEQINNLWLGDSYPLEWRESFVIPIPK
FT                 PGNLIREPASYRPIALTCCLSKVVERMVNRRLTHHLQQHGLLDHRQHAFRP
FT                 GYGTNTYFAALGEVLKEASDRNHHTEMISLDISKAFNRTWTPFVLEKLASW
FT                 GLTGHILHFLKNFLTNRSFRVVIGDTKSTTFNEETGVPQGSVISVTLFLVM
FT                 MDGVFDDLPTGVQIFVYADDIVIVVSGPTTVATRRKAQAAVSRVAKWAASV
FT                 GFTMSASKSIRCHICPSGHRVSGPPIVINNQAIPLRKTAKILGVTFDRSLS
FT                 FKPHCEAVRSNCLSRLNLIKSLSSPHRSNNRAIRFRVAAALIDSRLFYGLE
FT                 TTFLAMNRLIDTLSPIYNRYVRIVSGLLPSTPADAACAEAGLLPFRYLITA
FT                 TLCMKAAAFAEKTAGNARIRLLEEADNLLDSIAATKLPPVAKVHWYGERDW
FT                 HRSSLKFDSRIKNNFRAGDSSTRLRQSVAEVLRTDYAAHQRRYTDGSLSVQ
FT                 GVGIGIADDELAISLSLPGQCSIFSAEAAAIFFAATEPTTRPIIIITDSAS
FT                 CYFALQSEAPRHPWIQGIIRHASPDVTIMWVPGHCGIPGNSTADHLAGSGY
FT                 SSRRYTTTVPLADIRRWVKSTVRRAWQTEWTNSRGAYLRKTKESVDAWADL
FT                 KSMKDQKLISRLRTGHTRISHNLGGTPFHRVCEVCSINNTVEHVICVCPLY
FT                 EHLRQMYGIPGSIRDALQDDPSSIASLISFVKSAGLYFKI"
XX
SQ   Sequence 7481 BP; 1949 A; 2103 C; 1661 G; 1766 T; 2 other;
     cagtttgcct tgcgtttctg actgaagtag acgtgcgggc gtgtctcttc agtttttgta        60
     agcattttaa ccgttttaac gtgtgtataa gtttcgtttt agtgagtgtt ccttacgggg       120
     tacttagcta aggtaccact aattgataac gtttactcga gttattccgc aaaaaccgcg       180
     aagcgagtaa ttttcgcgtt cggaaaacga aaaaaaagcc cccttgagcc ggctatacgg       240
     maagggggcc cgtgttgtgt ttcatcacat tcgttcagtg gcctaaattg atacatctgt       300
     aggcaacagt tacactcttg accgaggtta accccaccta aagtgtgtgt gcaccagttg       360
     tttgcatatc tgggtaaaaa gtattacgga gaagaaacac gggatcaagc gtaaaaccgc       420
     agtgatagtg caatttaccc ctctggtgac gatcgagaag agtagcacca ttccccgctg       480
     gatcggatac ccgatcggga gtcggtgatt gattttctcc aactagtgta gtgaacagtc       540
     catctcccag gtggaatctt tccccggagt gaataccccc ccttcccctc gggacatctc       600
     ccccccttcc tcatacccct cacccccaaa ctcaacaaat ttaccccttc cccttccacc       660
     tcccccccct ctaaaattac cccttcccct aaaacttgtt cctcttccct tcacccatct       720
     cctggtactt ctctcacccc tcagtgttac acacagaaaa agttatccca ctctaaagtt       780
     gggtaaaaag tcgaattttt tcgaaaaagt gcggaaagtt tttcctcccc cacgtaaagg       840
     ggttctgagg ccaaagacac ttaagtcgtg cgcgggtgag ccgttgaaac ccagcgagta       900
     ttcttttcga gtgttttgtg ttcgtgtaag ccgttgtttt caccgaggag catcaacaaa       960
     gcacaggtta gttggtggtg gcggtgttct ttgggccttc atggccgcwa gttcatccgg      1020
     gcctcccccc acatcttggg gggacggtat tttggatttt cccacgttag gtagggttga      1080
     tggcacgttt accaacgcga cccttccgtc atacatggac ccggaaggaa tgtatggcga      1140
     attgcatttg ctcaggattt ccggagtcaa cggaccactt ccgaacagac catttcaaat      1200
     aaggcggtca gtagaaaagt ttgtcggtgg taaaatcgaa ggagcctttc ccgaggcaaa      1260
     caaagcaacc tacgcactta aggtacgaaa caagcggcaa ttcgaccagt tgctcaccat      1320
     gaaaaagttg aatgacggaa cagctatcac gatcacggaa catccaaccc tcaattcgat      1380
     taggtgtgtt gttagctgta gggatgtaat caacatgtcc gatgatgagc ttcttgaaga      1440
     gctgaaggaa caaggagtaa aggaggtcag gagaatcacc aagaaaaatg gacaatcacg      1500
     agagaatacg ccggcgatcg tacttacctg ccacggcaca atccgaccgg aagtcattga      1560
     attcggttac attcgatgtc ggacacgtcc ttactatcca agcccaatgc agtgctttaa      1620
     ctgctggctg tttggacata caaagctacg ctgccaggct aaatcggcca catgtgggac      1680
     ttgttctagg aatcatccga tttccgagaa caaggaatgc aatactgaac agttttgcaa      1740
     aacttgcgac agcaatgatc acaggatctc cagccgttct tgccctttgt ggcagtttga      1800
     gaacaccgtt cagcgagtaa aggtcgacca aggaatctcg tatccagcag cccgccgaat      1860
     cgttgaacaa aaccgtggtg gaaaatcttt cgctaacgtt gtagggcctc ctcccaaaga      1920
     ttccctgcag gtgacgaacg aaaggatcga tcagctaaca gctgtcctgg cttcaaagga      1980
     tgccgaaatt gccgaacttc gcgcagctct tgtgactagc gaaacccccc cggcggttat      2040
     caatcacgaa attgaatccc ttaaaactat cgtcgccaac caagcaagac aaatccaact      2100
     gctaacggac caaatatccg tctttctcaa ggctgtcatg cctgccgcca acctctccgc      2160
     gtcatcaacc aatccaatgc caacctccgt gacaccaact atcacctctg tatcagcaac      2220
     ctccaggcca ccaaccacca ctcccgtgcc catcaatatc cctattgccg ccgctcccgt      2280
     agacactgtt tctgcagtag taagtaaaac cgagccaaca gttcaactaa ttgacccact      2340
     attggaaacc gtttttactg attccgatag tccctctgcg gaactcagta caaacgagga      2400
     atttttttct cctcgcacgg agaaaatatt atcctcgcct agtacaccaa agcccacccg      2460
     tctcaaagct actcttcccg taaccgctag gataaatact gatccgatta tgacacggaa      2520
     taagcgtact ataagcacgc tatcccgcac tgaaaatctc tcccagcagc agaaaaaatc      2580
     taagcacaaa agctcctcgg acagcttggg ggccattccc aagtctcggt aagaccatca      2640
     accctatttt atcttcacac cgccacccca acgaaacatt atcacaaacc atacctcgcc      2700
     ttcccgctat gaactcccca accagcagcg caatgcagaa cacatggctt caggtcgtct      2760
     gggcaccggt gaactggaag ccttgtccca accagaatcg ccgggtcgac cctggcacct      2820
     agccaaccat tacgatccgt ccatcctcct tgatagtcgg ggcgccagtg taccggaagt      2880
     cttaccccaa ccggaatcgc tgggccgact tcggcatctt ggaagcgatg cggatgaaga      2940
     gctccggcaa aactatcgct gcccagctat atctcccggt agccggggca ccgtcggtgc      3000
     ggacgtctcc cacaccggaa ctggcggact accctcggcg ccggggggag acctggatga      3060
     gggaagtctg gcacatacgc ctactaccct ggacgacgtg ggaagtgaag gcatgcaaac      3120
     agtcgggacg cgtcgggctc taccccctac cccgaaggac tacgtgggaa gtgaagtcgt      3180
     atacaaccaa gtaaacgttc aagcacccaa ctccagtaac gcatccagct cgaataacaa      3240
     gaaaaggcta ttatcgcctc tcgcaactcc cttttttccc tccgtcggga catctctaca      3300
     ctcggtgggc tcatcttccg gtcctgccgt atgtggagct ctgtcttgtt cggcaaccaa      3360
     cgacgagaac gaagtaccta ctcgatcctt tttgtccacc gttgaatctt cttcaaccct      3420
     ggtgctttca cccctccggc gactcactgg cgatgttttg gataattcgt actccgatac      3480
     cacccactac caatcttcca ccgcaaatat aagctactcc atcccgacat tgccgaaatc      3540
     gtctaagttc tgcctacaat ggaacatgaa cggcttcctg aacaacctag cggatcttga      3600
     acttctggtg agctacgacc ctccttggat cttggcactc caagaagtca accgagtaac      3660
     aatcgaacag cttaatcgtt ccctcggtgg caaatacgtg tggacctcga aacgagaagg      3720
     taacatccgc cgttctgtcg ctctcgggat attaaagtca atcccgttca ccttcctgga      3780
     cattgactct caactaccag ttgtcggagt taagcttcat gggagtatta caatatccgt      3840
     agcctgcctg tacctaccat gcggaaacat tcctgaccta cgtggaactg tagagaacct      3900
     catccgtcag cttccagaac caagaatgat agtcggggac cttaacgcac accatccggc      3960
     atggggcggt ctccgttcag acgcaagagg cataatgttg ctcgatcttc tcgaggacag      4020
     tgatctcact attcttaatg atggctctcc aacattcttt aagggctact actcaacagc      4080
     aattgacgtt tcagctgtta cccggtcaga gatccggcgt tttcactgga atgtcaactc      4140
     ggatccatgc ggaagcgatc atcaccccct gctaatctca gtagccgccg aggctcctgc      4200
     caccactaga cgaccccgtt ggttgtatga ccaggcggat tgggccgcct ataacaacaa      4260
     catctgcgca tcaatcagta atcatcaacc aagtagcata tctgagtttt cggctatcct      4320
     aacccaagcg gcaagcgttt caattcccaa gacaagcaac acacctggcc gtaaggctct      4380
     cccttggtgg tccccggaga ttaaaaaagc tatcaaaaga cgtagaaagg ctctccgagc      4440
     cgttaagaga ttggacctca atcatccaaa cagagcagcg gctttggaca gataccgatc      4500
     tcagcgcaac gaatgccgcc aagtcattcg ggatgctaaa cgggcttgtt gggaaaaatt      4560
     tctcgacagc atcaatgctt cacaatcaac ttctgaccta tgggctaagg tcaacgccct      4620
     taacggcaaa cgatccgcca ccccgcccac tcttcttatt gacggaaaca acacagcgga      4680
     cccgaccgtt attgcgaacg gcctaggcaa atattttgcc agcctggctg cctttggtag      4740
     ctacgagccg gaattcgtac gacgttccgg ggctaccgcc ggcgacataa taaattttaa      4800
     cgtgcctgcg agcaactcgc agctccacat caacctacca ttctcagcag gagaactaca      4860
     gcatgccttg agcagaagta atggcaaatc cgccggccct gacgacatcg gctacccaat      4920
     gctaaagaaa ctggagggac cagggaagct agttttgctc gaacagatca ataatctttg      4980
     gctgggtgac tcctacccgc tagagtggcg agagagtttc gttattccga tccctaagcc      5040
     cggaaatctg atacgggaac cagcaagcta ccgtccgatt gcgctcactt gctgcctctc      5100
     gaaggtagta gagcgaatgg tgaaccgccg gctaacacac catctacagc aacacggtct      5160
     actcgaccac cggcagcacg cttttcggcc tggttatggc acaaacacct actttgcagc      5220
     tctcggcgaa gtgctgaaag aggcaagtga taggaaccat cacactgaga tgatctctct      5280
     ggatatctcc aaggctttta accggacctg gacaccattt gtcctagaaa aactagccag      5340
     ctggggccta accggccaca tactgcactt cctaaagaac tttctcacca accggtcctt      5400
     tagggtggta atcggtgata ccaagtccac cacctttaat gaagaaactg gcgtaccaca      5460
     gggatccgtc atatcggtaa ccctttttct agttatgatg gacggagtat tcgatgatct      5520
     gccaaccgga gtgcagattt ttgtctatgc ggacgatata gtcatcgtag tatctggtcc      5580
     aacaaccgta gctacacgca gaaaagcaca agcagctgtt tctcgagtgg ccaaatgggc      5640
     tgcctccgta ggcttcacca tgtcggcatc taaaagtatc cgatgccaca tatgtccatc      5700
     cggacatagg gtcagtgggc ccccgattgt aatcaacaac caagccatcc ctcttcgtaa      5760
     aactgcaaaa atccttgggg ttaccttcga ccgcagctta tctttcaagc cccactgtga      5820
     agcagtcaga tccaactgtc ttagccgcct gaatttaata aaatctctct caagtccaca      5880
     ccgcagcaat aatcgagcta ttcggttccg tgtcgctgca gctctaatcg atagtcgact      5940
     tttctacggt ctggaaacca cattcttggc gatgaacaga ctgattgaca cactgtctcc      6000
     catctataac cgctacgtgc gaatagtttc cggtctcctc ccatctaccc cagccgacgc      6060
     agcttgcgct gaagccggcc ttctgccttt ccgttaccta attactgcga cgctttgcat      6120
     gaaggcggcc gccttcgcag agaagactgc tggtaatgct agaatccgcc tcctagaaga      6180
     ggccgacaat ttgctcgaca gcatagctgc cacgaaactc cccccagtcg ccaaggtcca      6240
     ctggtacggc gagcgtgact ggcaccgctc atcactcaaa ttcgacagta gaataaaaaa      6300
     caacttcagg gcaggagact cgtcaacgcg gctgcgacaa tccgtcgctg aggtcttgcg      6360
     gacagactac gcagcacatc agcggcgtta taccgatggc tctctctcag tgcaaggggt      6420
     tggaataggc atcgcggatg acgaacttgc gataagcctc agtcttcccg gacaatgctc      6480
     gattttttcc gccgaagccg ctgctatttt ctttgccgct actgaaccaa ccactcgtcc      6540
     gatcatcata ataaccgact cagccagttg ttacttcgcg cttcaatcgg aggctccccg      6600
     tcatccgtgg attcagggaa taatcagaca tgcatcaccc gatgtcacca tcatgtgggt      6660
     tccagggcac tgtggcattc cggggaatag caccgctgat cacctagctg gatccggcta      6720
     ctccagccgt cggtatacca caacggttcc actggccgat attcgacgtt gggtaaaatc      6780
     aacagtacgc cgagcatggc agacggagtg gactaactca cgaggagcct acctgcgaaa      6840
     aacgaaggaa agcgttgatg cttgggcgga cctcaaatca atgaaggacc aaaaattaat      6900
     ctccaggtta agaactggtc atacaaggat ctcccacaac ctagggggga cacctttcca      6960
     ccgggtctgc gaggtttgca gtataaacaa tactgtcgag cacgtaatct gcgtatgccc      7020
     gctatacgaa catttgagac agatgtacgg aattccaggc agcatccgag acgcccttca      7080
     agacgaccca tcctcgatag catcattgat atcctttgtc aaaagcgctg gattatattt      7140
     taagatttaa gctttaggca accggaccta acgctttagt taccccacta tatgttagtt      7200
     tgcaatgttt cagttcctcg gattctgttt gttcttagtt ttaaaccatg tgtgatagtc      7260
     ccttagttat ccttatgtgt tgacgtgtga ttttgctttt ttcatctttt aattgtccca      7320
     gtgataaact ctggcaagta actctgcgaa gatcctagat ttaagccaaa ctactttgta      7380
     gctgttttcc agacgagccc atctggctcg ttctgtttac cggaccgggg atgaacctgc      7440
     ctacggcaga aaatccctaa ataaaaaaag agaaaaaaaa a                          7481
//
ID   I-80_AAe    repbase;    DNA;    INV; 4839 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-80_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4839
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1352-1352 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. This consensus is 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..4492
FT                 /product="I-80_AAe_1p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MVSGRRGAGEPEALPQSESPGRPRHLADRNSLFIFPD
FT                 SRGASLPEVLPQPESLGRLRRLGSDSDEELLQNYHRCPAISPGGRGPVSAD
FT                 VSHTGTDGQPSALGGDLEEGSLAPTPATLDDVGSQDLQALGTRRALPATPM
FT                 DDVGSEAILTQGIVQSPSPNNQSYPDDRTSRLSPLANPFFPAVGTPLHLVG
FT                 STPGPALCGALSCSSNDNIRYQTPYANRSYSIPALPKPAKFCLQWNINGFF
FT                 NNLGDLEILTSNDPPWILALQEINRVTIEQLNRSLGGKYMWTMKRMGNIRR
FT                 SVALGVLKSIPFAILNIDSQLPVVGVKLQGSLPITVACVYLPCGNVPDLRR
FT                 EVENCIHQLPEPRMIVGDLNAHHPAWGCSRSDARGNSLLDLLENNDIAILN
FT                 NGSPTYFEGFYSTAIDVSAVTRSEVQRFRWNVNADPYGSDHHPIQISVAAE
FT                 APTTTRRSRWLYDQADWAAYNNSINASFRTQQPSSISEFSTVLAQAAIVSI
FT                 PKTSNKPGRKALRWWSPEVKKAIKARRKALRAVKRMEPDHPYRDATIVRYR
FT                 FQRNECRQVIRDAKRACWEDFLDSINATQTTADLWAKVNALSGKRIAAPPT
FT                 LIIDGNLTAEPTAIANGLGKYFANLAAFDSYDPEFIRRSGVTTDDIVNFNV
FT                 PESNIQLSINEPFLVDELQYALSRSKGKSAGPDDIGYPMLKRLDGSGKLVL
FT                 LELINNLWTGNTYPLEWRESLVVPIPKPGNQMRETASYRPISLTCCLSKVV
FT                 ERMVNRRLTHHLQQHGLLDHRQHAFRPGYGTNTYFAALGEVLQEAKHKNHH
FT                 TEMISLDISKAFNRTWTPFVLEKLVSWGLTGHILHFIRNFLTNRCFRVAIG
FT                 DTKSASFKEETGVPQGSVISVTLFLIMMDGVFEDLPPGVQIFVYADDILIV
FT                 VSGPTIAATRRKAQAAVSRVAKWAASVGFSMSAPKSIRCHICSSGHRISGP
FT                 PIVINNQAIPVRKTAKVLGVIFDRGLTFKPHCEAVRANCRSRLNLLKSLSR
FT                 PHRSNNRGIRFRVATALIDSRLFYGLETTFLAVNRLIETLSPIYNRYIRIV
FT                 SGLLPSTPADAACVEAGLLPFRYLITATLCTKAAAFAERTAGNDRTRLLEE
FT                 ADILLDSIAGVTLPPVAKIHWYGDRDWRHSSLKFDGRIKDNFRAGDSSTRL
FT                 RQSVAELLRSDYTTHQRRYTDGSLSTQGVGIGIADDELAVSLGLPEQCSIF
FT                 SAEAAAIFYAATKPTPRPIVIITDSASCFFALQSEAPRHPWIQGIIRHAPP
FT                 GVTIMWVPGHCGVPGNSRADHLAGSGFSGRRYTTTVPLADIRRWVKSTMHL
FT                 AWQAEWTNARGPYLRKIKGSVDAWTDTKSMKDQKVISRLRTGHTRVSHDLG
FT                 GTRFHRICEVCETNNTVEHIVCVCPLYENSRQMNGISGSIRDALGDDPTST
FT                 ASIISFIKEAGLYFKI"
XX
SQ   Sequence 4839 BP; 1246 A; 1376 C; 1108 G; 1107 T; 2 other;
     atctcgcaaa gaatctctct cacaacagca gaaaaaatcc aaattcaaaa gcccctcgga        60
     tagcttaggg accattccca agtcacggta agaccatcaa ccctacttcc ttttcacacc       120
     gccaccccaa ctaaacaaga taaccatcca tacctcgccg tcccgtcacg agtcctccaa       180
     tcaacagcgc agcgcagaac aaatggtttc aggtcgtcgg ggcgccggcg aaccggaagc       240
     cttgccccaa tcggaatcgc cgggtcgacc ccggcatctg gccgaccgca atagtctgtt       300
     cattttccct gacagtcggg gcgccagcct accggaagtt ttaccccaac cggaatcgct       360
     gggccgactt cggcgtcttg gaagtgattc agatgaagag ctcctgcaaa actatcaccg       420
     ctgcccagct atatcccctg gtggccgagg ccccgttagt gcggacgtct cccacaccgg       480
     aactgacgga caaccctcgg cgctgggggg agacctggaa gagggaagtc tggcacctac       540
     gcctgcaacc ctggacgacg tgggaagtca agacttgcaa gctctaggga cgcgccgggc       600
     tctacccgct acccctatgg acgacgtggg aagtgaagct atattaacgc aaggaatcgt       660
     ccaatcaccc agccccaaca accagtccta tccggatgac agaacaagtc gactatcgcc       720
     tcttgccaac ccwttttttc ccgccgtcgg gacacccctg catctggtgg gttcaactcc       780
     tggacctgcc ttatgtgggg ctctgtcttg ttcgagcaac gacaacatcc gttaccaaac       840
     tccatacgcc aatagaagct actccattcc agcattacca aagccggcaa agttctgctt       900
     acagtggaac atcaatggct tcttcaacaa cctaggtgac cttgagatcc tgacaagcaa       960
     cgacccacct tggatcctgg ctctacagga gatcaatcgt gttacaatcg aacagctcaa      1020
     ccgctccctc ggtggcaaat acatgtggac tatgaagcga atgggcaata tccgccgctc      1080
     cgtcgctctc ggagtgctaa aatcgattcc gttcgccatt ctcaacatcg attctcaact      1140
     accagtagtc ggagttaagc tccagggaag tcttccaata actgtagctt gcgtctacct      1200
     accatgtggt aatgtccctg acctacgtag ggaggtagaa aattgcattc atcaactccc      1260
     ggaaccaaga atgatcgtcg gtgacctcaa cgcacaccac cctgcctggg gttgctctcg      1320
     ctctgacgct agaggcaata gtttgcttga cctcctggag aacaatgaca tcgctatcct      1380
     taataacggc tctcccacgt atttcgaagg gttttattca acggcaatcg acgtttcagc      1440
     cgttacccgg tcggaggtcc agcgattccg ttggaatgtt aatgcggacc cttacggaag      1500
     cgatcaccat cctatacaaa tctctgtagc cgctgaggct cccaccacaa ctagacgatc      1560
     ccgctggttg tatgaccagg cagactgggc tgcatacaat aacagcataa atgcatcttt      1620
     ccgcacccaa cagccgagta gcatatccga gttctccacc gtcctcgccc aagcggcaat      1680
     tgtttcaatc ccgaaaacaa gcaataagcc tggccggaag gcactccgtt ggtggtctcc      1740
     agaggttaaa aaagctatca aagcgcgcag aaaagccctt cgtgctgtca aaagaatgga      1800
     gcctgaccat ccttatcgag atgcgacgat tgtcagatat cgttttcagc gcaacgaatg      1860
     ccggcaagtt atacgggacg ccaaaagagc ttgttgggaa gactttctcg acagcattaa      1920
     cgctactcaa acaacagccg atctttgggc caaagttaat gcccttagcg gcaaacgaat      1980
     cgccgctccg cccacactca ttattgatgg aaaccttact gcggaaccaa cggctatagc      2040
     gaacggcctt ggcaaatatt tcgctaacct tgctgccttc gacagctacg atccggagtt      2100
     tatccgacga tctggtgtta cgaccgatga catagtaaac ttcaacgtac ctgagagcaa      2160
     catccaactt tccatcaacg aaccattctt ggtagacgaa ctgcaatacg ctctaagccg      2220
     aagtaaagga aagtccgccg gtcctgatga cattggctac cctatgttga agaggctcga      2280
     cggatcaggt aaactagtac tgctagagct gattaacaac ctgtggaccg gtaacactta      2340
     cccacttgag tggcgggaaa gtctcgtcgt tcctatcccg aaacccggaa atcaaatgcg      2400
     ggaaacagca agctaccggc caatctccct cacttgctgc ctttcgaagg tagtagagag      2460
     aatggtaaac cgccgactaa cgcaccacct acagcaacat ggtctactcg accaccggca      2520
     acacgccttc aggccggggt atggaaccaa tacctacttt gcggcccttg gcgaggtctt      2580
     gcaagaagcg aagcataaga accatcacac cgagatgatc tcgttggaca tctcgaaagc      2640
     ctttaaccgg acttggacgc ctttcgtact agaaaagctg gtcagctggg gccttaccgg      2700
     tcatattctg cattttatcc gaaactttct gactaaccgt tgcttcaggg tagccattgg      2760
     agacacaaag tctgcatcct ttaaggagga aaccggtgtt ccgcagggat ccgtcatatc      2820
     ggtaaccctg ttcctgatca tgatggatgg cgttttcgag gatctccctc ctggagtcca      2880
     aatatttgta tacgcggacg atattctaat agtagtgtct ggaccgacaa ttgcagctac      2940
     acgcagaaaa gcccaagcag ccgtctctcg agtagccaaa tgggctgcct ccgttggttt      3000
     ctccatgtcg gctccaaaga gcattcgatg ccacatatgc tcatccgggc ataggatcag      3060
     tgggcctccg atcgtcatca acaaccaagc tatacctgtt cgtaagacag caaaagtcct      3120
     tggagtcatc ttcgaccgcg gcctgacctt caagccccac tgtgaagcag tcagagccaa      3180
     ctgtcgtagc cgcctgaacc tactgaaatc tctctcgaga ccgcaccgca gcaacaaccg      3240
     aggtatccgg ttccgtgtcg ccaccgctct cattgacagt cgactgtttt atggtctaga      3300
     aaccactttc cttgcggtga acagattgat tgaaacactg tctcccattt ataaccgcta      3360
     catacgaata gtttcgggtc ttctaccgtc cactccagcc gacgcagcct gcgtcgaggc      3420
     tggcctactt cccttccgct acttgatcac tgctacactt tgtacgaaag cagccgcttt      3480
     tgcggagagg accgctggaa acgacagaac ccgcctccta gaagaggccg acatcctgct      3540
     tgacagcata gccggcgtga cgctccctcc tgtcgccaag atccactggt atggtgaccg      3600
     tgactggcgc cactcttctc taaaattcga cggcagaata aaggacaact tcagggcagg      3660
     agactcatca acacggttgc gacaatccgt cgccgagctc ctacggtccg attatacgac      3720
     acatcagcgg cgttatacag atggttccct ctcaactcaa ggggttggaa taggcattgc      3780
     ggatgacgag ctcgcagtaa gcttaggtct ccccgaacag tgttcaatat tttccgcgga      3840
     agcagcggct atattttacg ctgctaccaa gccaactccc cgcccgatcg tcataatcac      3900
     cgactcagca agttgcttct tcgctctcca atcggaagct ccccgccatc cgtggattca      3960
     ggggataatc cgacacgcac cgcccggggt tactattatg tgggttccag ggcactgtgg      4020
     cgttcccggt aatagtagag ccgatcacct tgcaggttcc ggcttttccg gccgccggta      4080
     tacaacaaca gtacccctgg ccgatattcg acgttgggta aaatcaacga tgcacctggc      4140
     atggcaggct gagtggacta acgcgcgagg gccctacttg cggaaaatta aaggaagtgt      4200
     cgatgcttgg acagatacca agtcaatgaa ggaccagaaa gtcatctccc ggctgagaac      4260
     cggccatacg agggtctccc acgatcttgg agggacacgt tttcaccgaa tctgcgaggt      4320
     ctgcgaaaca aacaacacag ttgaacacat agtctgtgta tgcccgcttt acgaaaattc      4380
     caggcagatg aacgggattt caggcagcat ccgagacgct ctcggagacg acccaacctc      4440
     gactgcatcg ataatatctt tcatcaaaga agccggactg tactttaaaa tttagttttc      4500
     cttgacatcc tgagtcagtg ttttgcggca aaccttgctt taatttactt cgtgattttc      4560
     aaacacctcg gatatcgtcc gttctgaact tttatttcaa ttcatgtttt ggtagtcccg      4620
     tgactaccct taattgttgt gatgcaatct tttaatatgt ggctattgtc tttttaaatg      4680
     tcccacgatk aagtaataac tgtgttaaga gcctaaaatt aattcaaaat actttgtagt      4740
     tttttcaggc gagtccttct gactcgtcct gcttatcaga ctggggatga acctgcctac      4800
     ggtagaaaat ccctcaataa aaaaaagaaa aaaaaaaaa                             4839
//
ID   I-81_AAe    repbase;    DNA;    INV; 5621 BP.
XX
AC   .
XX
DT   20-FEB-2012 (Rel. 17.12, Created)
DT   20-FEB-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-81_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5621
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2720-2720 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..1647
FT                 /product="I-81_AAe_1p"
FT                 /translation="MEIDGGVQNSGTNNDLVPSTSKPFRVKVYPSTFAGPF
FT                 PVYFRKKERPINVLLISSEVYKKYKSVKEIKKISLDKLRVVFGNREDANSL
FT                 LESKLFNEFYRVYAPCDSCEISGVIYDESLNCDDIRSHGSGIFRNQSISPV
FT                 KILDCERLSKLFFDDKGISKYIHSNCIKITFSGSVLPDFVNIDNVLFRVRL
FT                 YFPKLMHCNRCLLFGHTSNFCSNKQKCSKCGDFHSADDCKLNSDNCVYCKQ
FT                 KHISIKNCSVYMTNQKKLNEKIKNQNKFSYSEILKTSEDFSSPNVYETLSD
FT                 IKNDTSLDNHNKYIYKPPSKRKRLNISSIHDDDMSYTYSSNQFEKNFPPLN
FT                 IASTSKNIPGFQKINTPSRSPNDCSNDVTKNNNNSNNNNNNNSGDNEKNDF
FT                 SILSILEEILNLLGMSDFWKNLIKRFLPFLANLFEKLNSFGPFLSSLFS"
FT   CDS           1650..5342
FT                 /product="I-81_AAe_2p"
FT                 /translation="MASTSLEDLNILQWNCHSIFPKIDRLKAMLIDYNFDI
FT                 FCLSETWLTEDKFFRVPSYNIIRCDRNVPYGGVLIGIRDNIEFKYLDITFN
FT                 TNIEFVAISVNCNGLQFSIICIYIPPNVSFSLLDIKHILENVPSPFYILGD
FT                 FNAHNFAWGSDKIDGRGSLLMDLIDDLNLIIMNDGSFTRIAVPPAHNSAID
FT                 LSLCTSNLSFISSWKTLNDPNGSDHLPILIQIHGSKSKSEYVSTNSPDLCK
FT                 NVDWNKFSDLVSFSLIQFDYSSTPLENYKLFLKLLTEALMRSQIKHNASNS
FT                 FVKKRPTFWWDNDCSFALKNKSDAFKKFRKFGTRENYFLYCKAEAQFTRIT
FT                 KFKKRNYWKNFVQNLDRESSLSTLWKVARNLRNYEFSSQPVLEYSMEWIEK
FT                 FASKICPNFAPQKINFKTHQKFNYFPELCSLFSLEEMNLALSVTHNTSPGI
FT                 DKIKFIVLQNLPFEGKMHLLSLYNSFLLQNIFPPEWRFVKVISLLKPGKNP
FT                 SLADSRRPISLLSCVRKLMERMILNRLELWAERNNILSSSQYGFRKGCGTR
FT                 DCTALLASQIYLSFNRKQDMVSTFLDVSGAYDSVLIDLLYEKMINFKIPIV
FT                 LSNFICNMFSFKIMYFYHNGSSKMIRHSYFGLPQGSCLSPFLYNLFTSDLA
FT                 SVIPNGCYFYQFADDKVISISGKNRETIRHFMQCALDNIYDWAHNNGFTFS
FT                 VAKTKFIIFSRKHSYININLFFNNIEIEQVDVYKYLGIFFDSKLTWKFHIQ
FT                 QIQKTCSKRINFLKTITGTWWGAHPSDMLTLYKTTIRSVLEYGCFTFGCAA
FT                 HTHFSKIEKIQYRCLRICLKLMNSTHTMSVEVLTGIVPLKIRFHELNCKYI
FT                 TQCISNNHPIITILKSLAEINHTSKILDSFNYCMEQNIIPVSSSVFYKHEI
FT                 EIHSLQPSIDLSLHEELKQISCHDYSRFARLFFHRKFVGVNVDQFYFSDGS
FT                 LINDIAGFGVYNHFSAHFFKLQSPCTIFIAELTALYFACSLIKSRSPNIFF
FT                 ICSDSFSCLKAIRSVNFHSKTHHLILMIKQLLLELNLLGFIIKFVWVPAHS
FT                 QIYGNEQADSLAKLGVRCGSTYNRIISGSEYFPKLKKSSLYNWQVSWDTSD
FT                 KGRWCHSIHPKVNLNPWFKNLSVSRNFICCISRLISNHYNCNSHLYRINIK
FT                 DSNLCDCGESYEDIDHIIFHCTRYILPRNTFLKQIQNTGYPIPISVRDILG
FT                 NMFLPILKLLFQFLNEISYYV"
XX
SQ   Sequence 5621 BP; 1846 A; 770 C; 823 G; 2182 T; 0 other;
     ggtaagtagg ccttgaccgg cttggatggt cttttttctg cttgtcattt tttttttcaa        60
     ttttcagata cgagttttca agatttttca attattgtga cctggtgaat ctgtttatct       120
     gtggaattgt atcaggagtt gctgattggc gtgcttttga agtgatattc ggtggatact       180
     gaagtagctg aaacgattga aaattccggt gtttcttgga ttcagtttgt cgtccgttaa       240
     gtatttttat ttctattttt ttgttagctt agattttttt tttagttatt tattcagtcc       300
     ccacgttcaa tttccatcat ggaaattgac gggggtgtgc aaaactcagg tactaataat       360
     gatttagtac cttcaacttc aaaacctttt cgtgtaaaag tttatccctc aacatttgct       420
     ggtccatttc ctgtatattt ccgaaagaaa gaacgaccta taaatgttct tttaatttca       480
     tcggaagttt acaagaagta caaatcagtt aaggaaatta aaaaaatttc cttagataaa       540
     cttcgggtag tttttggtaa tagagaagat gccaattccc ttttggagtc taaattattt       600
     aatgaatttt atcgtgttta tgctccgtgt gattcttgcg aaatcagcgg agtcatttat       660
     gatgaatcat taaattgtga tgatattcga tcacatggtt ctggtatttt cagaaatcaa       720
     tcgatttcgc cagttaaaat tttagattgt gaacgattat caaaattatt ctttgatgac       780
     aaaggaattt ctaaatatat tcattccaat tgcatcaaaa ttactttttc tgggtcagtt       840
     ttaccagatt ttgtaaacat agataatgtt ttgtttcgtg taaggcttta ctttccgaaa       900
     ctcatgcact gtaatcggtg tttattgttt gggcatacat caaatttttg ttcgaacaaa       960
     caaaaatgct caaaatgtgg agattttcat tctgcagatg attgtaaatt aaattctgat      1020
     aattgtgttt attgtaaaca aaaacatatt tcgattaaaa attgttcagt atacatgaca      1080
     aatcaaaaaa aactcaatga aaaaattaaa aatcaaaata aattttctta ttcggaaatt      1140
     ttaaaaactt ctgaagactt tagttcacct aatgtatatg aaacattatc agatattaaa      1200
     aatgatactt cattagataa tcataataaa tatatttaca aacctcctag taaaagaaaa      1260
     aggcttaata tttcatcaat tcatgatgat gatatgtctt atacttattc ttcgaaccag      1320
     tttgaaaaaa atttccctcc cttaaatatt gcatcaactt ctaaaaacat tcctggtttt      1380
     cagaaaataa atacaccttc taggtcaccg aatgattgta gtaatgacgt aactaaaaat      1440
     aataacaata gcaataataa taataacaac aattcaggtg ataatgagaa aaatgatttt      1500
     tccattttga gcattttgga agaaatttta aatttattag gtatgagtga tttttggaaa      1560
     aatttaataa aacgattttt accatttctt gcgaatcttt ttgaaaaact caattcattt      1620
     ggtccctttt tgtcttcatt attttcgtaa tggcttctac aagtttagaa gatttgaata      1680
     ttttacaatg gaattgccat agtatttttc caaaaattga taggcttaaa gccatgttga      1740
     ttgattataa ttttgatata ttttgtttga gtgagacttg gttgactgag gataaattct      1800
     ttcgtgttcc ttcatataat attatacgtt gtgatagaaa tgtaccttat ggaggagtat      1860
     taattggtat ccgtgataat attgaattta aatatttgga tataacattt aatacaaata      1920
     ttgaatttgt tgctatttct gtaaattgta atggtttaca attttcaatt atttgtatat      1980
     acattccccc aaatgtttca ttttcattac ttgatattaa acatattttg gaaaatgttc      2040
     cctctccttt ttacattctt ggagatttta atgctcataa ttttgcatgg ggaagcgata      2100
     aaattgatgg tagaggatct ttgttgatgg atttgataga tgacctaaat ttaattataa      2160
     tgaatgatgg atcattcact agaattgcag ttcctccggc tcataattca gcaattgatt      2220
     tatcactttg cactagtaat ttatcattta tttcctcttg gaaaacatta aatgatccaa      2280
     atggcagtga tcatttaccc attttaatac aaattcatgg ttctaaaagt aaatctgaat      2340
     atgtttcaac aaattctcct gatttgtgta aaaatgttga ttggaataaa ttttcagatc      2400
     ttgtttcttt ttctttaatt cagtttgatt attcctctac tccacttgaa aattacaaat      2460
     tatttttgaa gttattaaca gaagctttga tgagatcaca aattaaacat aatgcttcca      2520
     attcttttgt taaaaaacgt ccgacatttt ggtgggataa tgattgttct tttgctttga      2580
     agaataaatc tgatgcattt aaaaaatttc gaaaatttgg aacgagggaa aattattttt      2640
     tatattgtaa agccgaagct cagtttacta gaattaccaa atttaagaaa agaaattatt      2700
     ggaaaaattt tgttcaaaat ctcgacagag aatcttcatt atccacttta tggaaagttg      2760
     caagaaattt gagaaactat gaattttcat ctcaacctgt tttggaatat tctatggaat      2820
     ggatagaaaa atttgcatca aagatttgtc ctaattttgc acctcaaaaa ataaatttca      2880
     aaactcatca aaaattcaac tatttcccag agctttgtag tttattttct ctggaagaaa      2940
     tgaatttggc tttatctgtt actcataata cttctccagg aattgataaa attaaattta      3000
     ttgtattaca aaatttacca tttgaaggaa aaatgcattt actatcattg tataatagct      3060
     ttcttcttca aaatattttc ccaccagaat ggcgttttgt aaaagttata agtttattga      3120
     aaccaggtaa aaatccttca ttggctgaca gtcgacggcc tattagttta ttgtcatgtg      3180
     tacgtaaact catggaaaga atgattttaa atcgccttga attatgggct gagaggaata      3240
     acattttatc ttcatcacaa tatggtttta gaaaaggttg tggtacacgg gattgtactg      3300
     cacttctagc atcgcaaatt tatttatctt ttaatagaaa acaagatatg gtttcaactt      3360
     ttcttgatgt ttctggagca tatgattctg ttcttattga tttattatat gaaaaaatga      3420
     taaatttcaa aattccaatt gtattatcaa attttatatg taatatgttt tctttcaaaa      3480
     tcatgtattt ttaccacaat ggatcatcca aaatgattcg tcatagttat tttggtcttc      3540
     ctcaaggatc ttgcttgagt ccttttttat ataatttgtt tacaagtgat ttagcatctg      3600
     ttataccaaa tggttgttac ttttatcaat ttgctgatga taaagttatc tctattagtg      3660
     gcaaaaatag agaaacaatt cgtcatttta tgcaatgtgc acttgataat atttatgatt      3720
     gggcacataa taatggtttt acgttttcag tggctaaaac aaaatttata attttttcac      3780
     gtaaacattc ttatattaat attaatttat ttttcaataa tattgaaatt gaacaagttg      3840
     atgtatacaa atatcttgga atattttttg attctaagtt aacgtggaaa tttcatatac      3900
     aacaaattca aaaaacttgc tcaaaacgga taaatttctt gaaaacaatt actggcactt      3960
     ggtggggtgc tcatccttct gatatgttaa cactttataa aacaacaatt cgatctgttc      4020
     tagaatacgg ttgttttact tttggatgtg ctgctcatac acatttttct aaaattgaaa      4080
     aaattcaata tcgttgttta agaatttgtt taaaattaat gaattccact cacacaatgt      4140
     ctgtggaagt tttaacagga attgttccat taaaaattcg atttcatgaa ttaaattgta      4200
     aatatattac tcaatgtatt tcgaacaatc atcctataat aacaattttg aaatccttag      4260
     cagaaattaa tcatacgagt aaaattttag attccttcaa ttattgcatg gagcaaaaca      4320
     ttatacctgt ttcttcaagc gttttttata aacatgaaat tgaaattcac tcactgcaac      4380
     cttccattga tttatcttta catgaagaat tgaaacaaat ttcatgtcat gactattctc      4440
     ggtttgctag attgtttttt catcgaaaat ttgttggagt aaatgttgat caattttatt      4500
     tttcagatgg atcattaatc aatgatattg caggatttgg agtgtataat catttctcag      4560
     cacatttttt caaattacaa tccccgtgta ccatttttat tgctgaatta actgcattat      4620
     attttgcatg tagtttgata aaatctcgtt caccaaacat attttttatt tgttccgata      4680
     gttttagttg tcttaaagct attcgttcag taaactttca ttctaaaact catcatctta      4740
     ttctaatgat aaagcaatta ttacttgaat taaatttatt aggatttatt attaaatttg      4800
     tatgggttcc agctcattca caaatttacg gtaatgaaca agctgattct ttagctaaat      4860
     taggtgttcg ttgtggaagt acatataatc gcattatttc aggatctgaa tattttccaa      4920
     aactaaaaaa atcttctttg tataattggc aagtgtcttg ggacactagt gataaagggc      4980
     gttggtgtca ttctattcat ccaaaagtta atctaaatcc atggtttaaa aatttatcag      5040
     ttagtagaaa ttttatttgc tgtatttcaa gattgatttc aaaccattat aattgtaata      5100
     gtcatttata tcgcattaac ataaaagatt ccaatttatg tgactgtggt gaatcctatg      5160
     aagacataga tcatataatt tttcattgta ctcgatacat cttaccaaga aatacatttt      5220
     taaaacaaat tcaaaataca ggttatccca ttccaatatc tgttcgagat attttaggaa      5280
     atatgtttct gccaattttg aaacttctat ttcagttttt aaatgaaatc tcatattatg      5340
     tgtgatattt tctttttctt cgtatgtttc ttttcagatg tgaagaattt tttactgtgt      5400
     gtggtatctc aataatcctg gacgtttccc attttcaaga aactggctct gctatggatc      5460
     attaccgttt gagcctttta ttattaagat tgttgatttt ataatgtatt cagaaaagat      5520
     aaagaggttt tgtgcctttt tgagaaagat tttaattaaa aatcactcaa aggggctttt      5580
     ccctctttca aaatttgaag ttaaaaaata aaataaataa a                          5621
//
ID   I-8_AAe     repbase;    DNA;    INV; 5599 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5599
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1362-1362 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 25 sequences with 87-97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           255..1760
FT                 /product="I-8_AAe_1p"
FT                 /translation="MDQDSDHCEEPPAKIKPPDPNGXVQHTQPILLSQIPS
FT                 PDSALSVPPLSAHAAPVVPPPPMPPSSSHVAPPSSSSSPSLQSISIPKPPQ
FT                 SKRHRCYPESSKGPYEVFVRQKDKPVKVLLVSAEVHKHFRSVKEVKQIGFT
FT                 KVRIIFSDRLEANNVVYNELLSRLYRVYIPSERVEIDGVINQAEMDLNYLT
FT                 NEGYGKFKDPRVPQVSILECQQLAEARVEDNVKTYSPSNEIRVTFEGTILP
FT                 DYVEIDKALIRVRVYTPKVMLCAKCKRFGHTEIYCSNQACCGSCGKRHAEG
FT                 ECTIQQPACLYCKGTHLNKNECPTYKKQMMLAKARVVQKSKLSYAAIVKAP
FT                 VSPNFEHENEYSSLSELSDLEEEAHHSSYVPPKRKKLRFDNVAKRTKQHND
FT                 KVPPPVGQSAKQARPPLEIPGFKKDAFPPLPDRNGGLDSNRRANESSNSNP
FT                 CTDKFNVPQLIHSFAEAFDLGKFWIDLLLKLTPIFKTVLSKIITCLPLLGS
FT                 FLSIDG"
FT   CDS           1764..5438
FT                 /product="I-8_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="SESKKRFSILQWNCRSILPKIGNLRSFLNRIEADCFA
FT                 LSETFLVESLFFSIPSFNIVRLDRETRSGGVLIGIKSNYSFERVTIRNSLP
FT                 IEIVACSVQIDTQNVTIASIYIPPSAKIDRNKLRVVIGQIPQPAFILGDFN
FT                 SHGTEWGESVDDSRANIIYEILDEYNLAVLNTGEITRIACPPHKCSRVDLS
FT                 LCSSAIALSSSWSVMNDPADSDHLPIHITFGTFEHQQTTVQFDLCRHINWN
FT                 DYSSLILQAIDDNNELQPDELYSFLTSIINEAAMKAQTKPIPKRPRKSKTP
FT                 TIWWDKDCTEMINQRSEAYKMFRRSGATEHFLRYKKVEAKTKRLLKQKKRS
FT                 FWRTYVESLDSQTALSSLWSTARKMRNYVPPPSNLXKFDSEWIQDFAQIIC
FT                 PAFAXVKRPNFLNESSVXDGLDLIHDYSLSELEHALTACNNSSPGLDNVKF
FT                 PLIQKLPEKAKLLLLKSFNWIVQNNAIPDSWSIVKIVAIKKPGRDPGSADS
FT                 YRPIGLLSCYRKTLEKMIQFRLESWAEKNNILSPTQYGFRQNRSTRDCQIL
FT                 LATDIQLAYTSKEELAAIFLDIKGAYDSVLIDILCKKLNELGVPGQLASFL
FT                 YSLLSYKEMHFEQNNKISLTRCSFAGLTQGSVLSPLLYNMYVSDIDSCIHK
FT                 NCYLVQYADDSCFWTFVKNIELAKEYLQTTLNNLIKWANDIGFTFSPNKSE
FT                 TVVFSRKRFPAKVEVQLGSEKIPTSSSTKYLGVWYDQKSTWKMHVEYLVTK
FT                 CQKRINFLRTISSTWWGAHPNDMIKLYKTTILSVIEYGCFVFHQTAKVHFL
FT                 KLERIQYKSLRICLGLMTSTHTMTVEILAGVPPVDVRFLELNSRYLVAKHI
FT                 SSSPILNNIDKLFEMNPXSTYLKAYRLCLTIPSGPQEHLHYFDIDRPSAFP
FT                 DIPIDKSLISAVRDAPSAERRMILAICNEKLSGFDEQNIFYTDGSLLDGHV
FT                 GFGVYNVNHQVYFRLVEPCSVYMAELTAIWYVLDYVGSLPPGEFLICSDSL
FT                 SSLEAIKNIRLSSKTSXMVLKIRNGISELQGRNFKISFLWVPAHSGIXGNE
FT                 YADALAKEGTVRGEEFHRALEPHDFNTVIKHTMIQIWQNQWSHSDLGRFCY
FT                 GILPNVKLKPWYTGINCDRTFIKNMSRLISNHFTLNAHLFRIKITQTNLCE
FT                 CNEDYEHFDHILWNCNKHTDSRITMQTALSRIGRPLNTPIRDVLGTMDIPA
FT                 MRIINNFILNAKIKI"
XX
SQ   Sequence 5599 BP; 1754 A; 1201 C; 1064 G; 1569 T; 11 other;
     cagttgcttc tcacctctcg acgagtacgg ttgtgtttta tatccagctg tggttcagta        60
     cagaaaagta tactagtagc gtgtgatctt tgggatctca tttttcgtgc tatcttcctt       120
     ccaccttcgt ttttcggttc gcagataagt acccttttga ttgattattc tcttttgagt       180
     gactacagca actgctgcaa caaaaaaaaa gttttccgtt tgacgctctg gaagctaagc       240
     ttccatattg aaccatggac caagacagcg atcactgcga ggaacctcca gctaagatca       300
     agcctcctga tccgaatggt cakgtacagc atacacagcc gattttgcta tcacagattc       360
     cttctcctga ctctgctctt tccgtaccgc cattgtccgc tcacgctgct cctgttgttc       420
     ctcctccgcc tatgcctccg tcttccagtc acgttgctcc accgtcgtcg tcgtcgtcgc       480
     catcactcca gtcgatctca ataccaaagc ccccgcaatc aaaacggcac agatgttacc       540
     cagagtcctc caagggtccg tacgaagtgt tcgttcgtca gaaagataaa ccagtcaaag       600
     ttctgcttgt atcggccgag gttcataaac attttcggtc tgtcaaggaa gtcaaacaga       660
     tcgggttcac taaggttcga atcatctttt ctgatcgtct agaagccaat aatgttgttt       720
     acaacgagct tctcagtagg ctgtacagag tttacatccc tagtgagaga gttgaaatag       780
     atggtgtaat aaatcaagcc gagatggact tgaactacct aactaatgaa ggttacggaa       840
     agttcaagga cccacgtgtt ccacaggtgt cgattcttga atgtcaacaa ctagccgaag       900
     cgcgggttga agacaacgtc aaaacctatt ctcccagtaa cgaaattcga gtcacattcg       960
     aaggtaccat tcttccagat tatgtggaga ttgataaagc tctcattcgt gtgcgcgtct      1020
     acaccccgaa ggtcatgctc tgtgccaaat gtaaaagatt tggtcatacc gaaatctatt      1080
     gttcgaatca agcttgttgt ggtagctgcg gtaagcgcca cgctgagggt gaatgtacga      1140
     tacagcaacc agcttgcttg tattgcaaag gtactcacct taacaagaat gagtgcccta      1200
     cctataagaa acaaatgatg ctagcaaagg ctagagttgt tcaaaagtcc aaattgagct      1260
     acgcagcgat agtgaaagct ccagtgtctc ccaattttga gcatgaaaac gaatacagct      1320
     cgttgagcga actgtccgat cttgaagaag aagcccatca tagcagttat gttcctccca      1380
     aaaggaaaaa acttcgattc gataatgttg ctaagcgtac aaagcagcac aacgataaag      1440
     ttcccccccc agtcggtcaa tctgccaagc aagctaggcc tcctctagaa attcccggat      1500
     tcaagaaaga tgcatttcct ccactcccag atcgtaatgg tggtttggac agcaaccgac      1560
     gcgcaaatga gtcctctaat tcgaacccat gtacagataa gttcaatgtt cctcagttga      1620
     ttcactcgtt cgcagaagcg ttcgatctag gcaaattctg gatcgacctg ctgttgaaac      1680
     tgactcccat tttcaagacc gttctttcaa agataataac gtgcttgcct ctcctgggtt      1740
     cattcctgtc tatcgatggc taatccgaat cgaagaaaag attctccatc ttgcaatgga      1800
     actgtcgaag cattttaccg aaaataggta atcttcgctc ttttctcaat cggatagaag      1860
     cagattgttt tgcactctct gaaacatttc tagtagaaag tttgttcttc agcattcctt      1920
     cgtttaatat tgttcgtcta gatcgtgaaa ctcggtcagg aggagtattg atcggtatta      1980
     agagcaacta ttcattcgaa cgagtgacca tccggaatag cttgcccata gaaattgtcg      2040
     cmtgttccgt ccagatagat acccaaaatg tcacaattgc ctccatttat attccaccct      2100
     cggctaaaat agatagaaat aagctgcgtg tagtgattgg tcaaattccg caaccggcat      2160
     tcatattagg tgatttcaac tcccatggca ctgaatgggg agagtcggta gacgattcca      2220
     gagcgaacat tatctatgaa attttagatg aatacaatct tgccgttctg aatacgggag      2280
     aaataacccg aatagcttgt ccaccccata aatgtagcag agtcgacctt tctctttgct      2340
     cttcagcaat tgcgttaagt tcatcctggt ctgtcatgaa tgatccagca gacagtgacc      2400
     accttcccat tcacatcaca ttcggtactt ttgaacatca acaaacaaca gtacagtttg      2460
     atctttgtcg ccacataaat tggaatgatt attcgtcatt gattttgcaa gctattgatg      2520
     acaacaatga gttgcaaccg gatgaattat attcttttct cacttcgatc ataaacgaag      2580
     ctgcaatgaa agctcaaact aagcccatac cgaaacgccc acgtaaatct aaaactccta      2640
     caatttggtg ggataaggat tgtactgaaa tgatcaatca aagatcagaa gcttataaaa      2700
     tgttcagaag atctggtgcg acagaacatt ttctgcgtta taagaaagtt gaagcgaaaa      2760
     ctaaacgcct tcttaaacag aagaaacgaa gtttttggag aacatatgta gaatcacttg      2820
     atagtcaaac tgctctcagt tctctatgga gtacagcacg caaaatgcgt aattatgtcc      2880
     ctccaccgag caatcttgan aaattcgatt ctgaatggat tcaagatttc gcccaaatca      2940
     tatgtcctgc ttttgccscc gtgaagagac caaactttct gaatgaaagc tcggttatkg      3000
     atggcttaga tctaattcat gattacagtt tatctgaact ggaacatgca ttaacagctt      3060
     gtaacaactc gtcacctgga ttagacaatg ttaaatttcc tctgattcaa aaattgcctg      3120
     aaaaagctaa actccttcta ttaaaatcat tcaattggat cgttcaaaac aacgccattc      3180
     cagattcatg gtcgatagtg aaaatcgttg caatcaaaaa acctgggaga gatccaggca      3240
     gcgcggattc atatcgtccc attggattat tatcatgtta ccgaaaaaca ttagaaaaaa      3300
     tgattcaatt tcgattagaa agctgggcag aaaagaataa tattctttcc ccaactcaat      3360
     atggatttag acaaaataga agtacacgtg attgtcaaat actattagca accgacatac      3420
     aattggccta cacctccaaa gaagaactgg cggctatatt tttagacata aaaggtgctt      3480
     atgattcagt tttaattgac atactttgta aaaaactaaa cgaactcgga gttccaggtc      3540
     agctagcaag ttttttgtac tctttgcttt cgtataaaga aatgcacttt gaacagaaca      3600
     ataaaatatc gcttacacgt tgtagttttg caggactcac acaaggttct gtgttaagcc      3660
     ctctacttta taatatgtat gtaagtgata ttgatagctg tattcacaaa aactgctatt      3720
     tagtgcaata cgctgatgac agttgttttt ggacgtttgt taaaaacata gagttggcga      3780
     aagagtattt gcaaactaca ttgaataacc tcataaaatg ggccaatgac atcggattta      3840
     cgttttcacc aaataaaagc gaaactgtag tcttttcaag aaaacgtttc cccgcaaaag      3900
     ttgaagtaca acttggatca gaaaagattc ctacatcatc aagcacaaaa taccttggag      3960
     tatggtacga tcagaaatct acatggaaaa tgcacgttga atatcttgtc acgaaatgtc      4020
     aaaagcggat aaactttctt cgaacaatat cwagtacatg gtggggtgca catccgaatg      4080
     atatgattaa gctttacaag acaaccattc tgtcagtaat agagtacggt tgcttcgtgt      4140
     tccaccaaac agcgaaagtc cactttttga aactagaaag gattcaatat aaaagtctac      4200
     ggatatgctt aggactaatg acttccaccc acacaatgac agtcgaaata ctagcaggag      4260
     tgcctccggt cgatgtaaga tttctagaat tgaactccag ataccttgta gctaagcaca      4320
     tatcttcgtc acctattctc aataacatcg ataaactgtt tgaaatgaac ccgsagtcca      4380
     cttatttgaa agcatataga ctctgtttaa cgatcccttc tggacctcaa gaacatttac      4440
     actactttga catagaccgc ccatctgcct tccctgatat accaatcgat aagtctttga      4500
     tatctgcagt tagagatgcg ccaagcgctg aacgtagaat gatactagct atctgcaacg      4560
     aaaaattgtc tggttttgac gaacagaaca tattctacac cgatggatcg ttgttggatg      4620
     gacatgtggg ctttggggtt tacaatgtta atcaccaagt gtatttcaga ttggttgaac      4680
     catgttcagt atatatggct gaacttacag caatatggta cgtwttggat tatgttgggt      4740
     ctttaccacc aggcgaattc ttaatatgct cagatagttt gagctctttg gaagccatta      4800
     aaaatattag attatcctcc aaaactagtm acatggtact caagatcaga aatggtattt      4860
     ctgaattgca aggaagaaat ttcaaaattt cattcctttg ggttcctgct cattccggga      4920
     tamaaggaaa cgagtatgcg gatgccctgg caaaagaagg cacagtacga ggagaggagt      4980
     ttcatcgagc attggaacca catgatttca atactgttat aaagcacact atgatacaaa      5040
     tttggcaaaa ccaatggagt cacagcgatc tgggaagatt ctgttatggt attcttccta      5100
     atgttaaact aaaaccttgg tacacaggaa tcaattgcga ccgcacgttc atcaaaaata      5160
     tgtcaagact catttctaat cacttcactc tgaacgctca tcttttcaga attaagataa      5220
     ctcaaaccaa cctatgcgaa tgcaacgaag actacgaaca cttcgaccac atcctttgga      5280
     actgcaacaa acatacggat tcaagaatca cgatgcagac cgctctgagt cgaatwggga      5340
     gacctcttaa cactcccatt agagatgttc ttggaacgat ggacatccca gctatgcgaa      5400
     tcatcaataa cttcatatta aacgccaaaa tcaaaatata atgtctagta gtaataagaa      5460
     aaaaaaatgc ttaaccatat ataaaattca actattttat aaaaaaaaaa ctcgatgtat      5520
     cggctacgaa atggttacaa ctaactaaaa ttgcctaata aatcgtgggt tttgtgccca      5580
     caagaaataa aaaaaaaaa                                                   5599
//
ID   I-8_BTa     repbase;    DNA;    INV; 6242 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6242
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 701-701 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(224..979,921..1913)
FT                 /product="I-8_BTa_1p"
FT                 /translation="MDLSDPPGDPGGTPPKDASSPMDTLDPNQSELILQSQ
FT                 PPTNGHLKDTQSELNRPQTNTSQTDQIPSHTQVRSSPTDIRKAFIIKDKNN
FT                 LRYNESSNGPFVVALTKDNIGNKHLTLIGELLYSNGIEGIKNIQRINKDMI
FT                 HIELLNKDYANNLIENYAKLIPYERCNCFIPLKYTTRRIIVNNVHTDLTIN
FT                 AIGQYLQDKYSNIISARRIYRKNDDNALIPTAKLDVLWEGSVTPDFLYIFY
FT                 SKCSTTPYICIPLTFFTFSTQNALPPLTYVYNLVKCLNCLNYGHRADFNGN
FT                 RICKSQPRCHKCAEIHAAHDICPNQMKCYHCQQAHLTFSITCPELIKQKAI
FT                 KQIMSTQNLSFKEASKIQKVKEEHSQSIDLAARLKAIQTKLKEGQPIDIKE
FT                 LDISNFPMLKNKYKQLESIGTDTNDKHQYTIEDLRRPYSEIVSSPSPTRKK
FT                 AKKNVEENFPSDQWLNKYHSQIPGDVTNNKEIEPKKGFWPLPKKSPTEGNP
FT                 NTPSSSNNSTIHTKQTYSSNSYYNPSRANQTGNQTKTNSINLNIEKKSIPP
FT                 KQLPTPNQNNLTAKQSPLSPNKKIPEKKTLTNKTLF"
FT   CDS           join(2112..4982,4913..5068,5072..5737)
FT                 /product="I-8_BTa_2p"
FT                 /translation="MPLTNKLKIPKNFKILNWNIRSLISNEVDLRLLINQQ
FT                 DPDIIMLAETWMNPNYIKKFPGYNSYRLDRADGYGGLLTLVKLKYNSAPVP
FT                 LRNDNLQTKRIESQVTKLMIDNSELYLLNMYINPTSKYTTNDFNNFFIINN
FT                 LSNKTLFWAGDCNAKHPTWGYEFADSKGSTLMEISQDLNLFNINSLNPQPT
FT                 RKSAPNQGPFFNDLAFISNSLAGNSEWEALLTGGSDHFPCIYMLNKQPIPT
FT                 SNSPTSNVDPLIKYKLKDWSYYRRILDSHLTDEKYSYDKFIEIIEQAFYLS
FT                 KQQEYNSRYPFLSYNNNTQKSSNKKRKLYKQIPWWNEECQNLKNKRDSLAL
FT                 AYKNNPSINIYLEWAKVRAQFKLVTKKQKRIQWKIFTNNLNHKTPAKIIFE
FT                 KTKILKRALIPHPNKNNDWTDDFLHNLTPDSQYANQWNDLSTFNESWEKIS
FT                 IEELKLALAKLKKKNPGLDNIPIECINKASTMAQQHMCNIFNEILLTKKIP
FT                 ESWKTILIFAQLKTDQDPNSARSYRPIGIISAIRKLFERILLNRLEYFLES
FT                 NNKLSPFQFGFRKGKNICHNLIQLSTQAYKAIGNKEYTPTIFLDIENAYNN
FT                 VNSDILFEKLLSKGINPDFTKIILNLITNNDMFLRNQFTTMGPRRIPKGLT
FT                 QGGILSPLLYLIYSANLHSKLIFFSHISEFADDVNIFSQNKCLDEAINVVV
FT                 RDFYNLQTEIYELGLDFSMKKIKILIFTNRRIPPNYSINLNDINIPISSNA
FT                 RYLGLIFNNKMKWHSHLKFIKEKVETKLNILSYLNGAAWGVNQNVSRLLYL
FT                 SMIRPIIDYGITVYCNNYEILDKTNKIQNQCIRKVLSALNSTHTNNLIVES
FT                 AIPTIQHRFNYLTDKLIIKAMSYENNSIINDLKLLEMSVFNSPWSSNKQFP
FT                 LIVHRWLKLKIYEKEIAKVSLPPSLCQDPKFQYFQPSIDFLNIKKKTKLKI
FT                 NPISILPTINRLSKYKKKNEIENQSIIRNKFRDHFNTKYNQMTQIFTDGAK
FT                 TDTVTAVFTVNDFFKLFRLSEYSTIFDAEAIVIEEAVKYIIKNNIKDLLIC
FT                 SDSKSVLTTLLNRKNDLTPTLMNTKRPLFNNQNNNIHMLWIPSHVGIPGNE
FT                 KADALTKILPLANKINNKLHYKQLLPVIKMNMLKEWNLEWNACTWKGQKLK
FT                 LIQPKISKKPWFHKFHWNRSSIKNFIRLRIGHGLFPTHLKRINLKDTDKCE
FT                 CGLLGDLNHILLPMRKTKRQR"
XX
SQ   Sequence 6242 BP; 2389 A; 1330 C; 801 G; 1722 T; 0 other;
     ttccgtttga attttcattc cgaccacacg taccattttt tgctctagcg atttctaacc        60
     tctttagttg cctcgtggcg tttttccctt tatttcttgt ttcctttctt tctttctacg       120
     atgatgtgat aactgtgctt tagtttagtt attctagaaa gtgcttttct atctttttat       180
     ttctcttcgc ttactatgta acctgctata atcggtttcg tcaatggatc tctcagatcc       240
     gcccggtgac ccgggaggaa cccctcctaa agatgcttct tctcctatgg acactctaga       300
     ccctaatcaa agtgaattaa tcctacagtc tcaacctccc accaatggac atctaaaaga       360
     cacccaatct gaattgaacc gtcctcaaac caatacctct caaaccgacc agataccatc       420
     tcatacccaa gtaagatcgt cacctacaga tatccgcaaa gcgtttataa tcaaagataa       480
     aaataatttg agatacaatg aatcctctaa cggccccttc gtagtagctc ttactaaaga       540
     caacatagga aataaacatc taactctaat tggtgaattg ttatactcta acggaataga       600
     aggtattaag aatatccaaa gaataaacaa agatatgatc catattgaat tgttaaataa       660
     agactatgct aataacctta ttgagaacta cgcaaaacta atcccttacg aaagatgtaa       720
     ttgttttatc ccgttaaaat acactactcg tagaatcata gtaaataatg tccatacgga       780
     ccttacgatt aatgcgatag gtcagtatct acaagataaa tattcaaata tcattagcgc       840
     tagacgaata tatcggaaaa atgatgataa cgctttgatc cccacagcta aattagatgt       900
     actatgggag gggtctgtaa cccctgactt tctttacatt ttctactcaa aatgctctac       960
     caccccttac atatgtatat aacttagtga aatgtcttaa ctgcctgaat tatggacacc      1020
     gcgccgactt taatggtaat cggatttgta aaagccaacc ccgatgccac aaatgtgctg      1080
     agatccatgc agcccatgat atttgcccca accaaatgaa gtgctatcac tgccaacaag      1140
     cccaccttac attctcgatt acatgccctg aattgataaa acaaaaagcg ataaaacaaa      1200
     taatgtctac ccaaaacctt tcttttaaag aagcgtctaa aattcagaaa gtaaaggaag      1260
     aacactccca atcaatagac ttggctgctc gtttaaaagc gattcaaact aaactaaaag      1320
     aaggtcaacc cattgatata aaggaattgg atattagtaa cttccctatg ttaaaaaata      1380
     aatataaaca actagaatca attggaacag acacaaatga taaacaccaa tataccattg      1440
     aagatctacg cagaccatat tcagagatag tttcgtcccc gtctcccacc cgtaaaaaag      1500
     caaaaaaaaa tgtagaagag aatttcccgt cggaccaatg gcttaataaa taccatagtc      1560
     aaatccctgg agatgtaact aataataaag aaatagaacc taagaaaggt ttctggccgt      1620
     tacctaaaaa gtctcctacg gaaggaaacc ccaatacccc atcatcttca aataattcaa      1680
     ctatccatac gaaacaaaca tattcctcaa actcttacta taacccgtct cgcgcaaatc      1740
     agacaggcaa tcaaacaaaa accaattcaa tcaatctgaa tattgaaaag aaatcaatcc      1800
     ctccaaaaca attacctacc cctaaccaaa ataatctaac agctaaacaa tcaccactat      1860
     ctcctaataa aaaaatccct gaaaaaaaaa ccctaactaa taagacatta ttctaataag      1920
     attaagcgac aatatgagaa ctaaaaataa aaagaaattt aaaataaaaa aagtaaatat      1980
     agataatcta gactttccaa cagtaatatc cttaggacat ttaaaagtga ataaagttta      2040
     cataaatgtt cctatatcac taagactatt aaatcctaaa acaaagaaat tccctaaaat      2100
     tccgaccaaa tatgcctctt accaataaat taaaaatccc caaaaatttc aagatactta      2160
     attggaacat ccgttcccta atatcgaatg aggtagatct aagactcctt ataaaccaac      2220
     aagacccaga cataataatg ttagcagaaa cttggatgaa tcctaattac attaagaaat      2280
     tcccgggcta caatagctac cgattagata gagctgatgg atatggtggt ctattaaccc      2340
     tagttaaatt aaaatataat tcggccccgg ttcccttacg taatgataat ttacaaacta      2400
     aaagaataga aagtcaagta accaaattaa tgatagataa ttcagagctg tacttactta      2460
     acatgtacat caatcccacc agtaaatata ctacaaatga ctttaataat tttttcatta      2520
     ttaacaactt atccaataaa accctttttt gggcaggaga ttgtaatgct aaacacccta      2580
     cttggggcta tgaattcgcg gattccaaag gttcgaccct tatggaaata agccaagacc      2640
     ttaatctgtt taatataaat tctctaaatc ctcaacccac caggaaatca gctcccaacc      2700
     aaggaccgtt ttttaatgac ttagcattta tatcaaattc cctggctggt aactcagagt      2760
     gggaggcact tctcactggg ggaagtgacc atttcccttg catctatatg cttaacaaac      2820
     aaccaatacc gacctctaac tccccaacgt caaatgtgga ccctttgata aaatataaac      2880
     taaaagactg gtcttactac agaagaatac tagactctca cttaacggac gaaaaatatt      2940
     cgtatgataa attcatagag atcattgaac aagctttcta cctaagtaaa caacaagaat      3000
     acaactcacg atatccattt ctttcttaca ataataatac tcaaaaatcg tcaaataaaa      3060
     agaggaaact atacaaacaa attccatggt ggaatgaaga atgtcaaaat ctgaaaaaca      3120
     aacgagacag tttagcttta gcctataaaa ataatcctag tataaatatt taccttgaat      3180
     gggcgaaagt aagagctcaa tttaaacttg ttacgaaaaa acaaaaaaga atacaatgga      3240
     agatatttac taataactta aaccataaaa cccctgccaa aattatattt gaaaaaacga      3300
     aaattcttaa gagagccctg attccccacc ccaacaaaaa taatgattgg acggacgact      3360
     tcctccacaa cctcactcct gattcccaat atgccaatca atggaatgac ctctctacgt      3420
     tcaatgaatc atgggaaaaa atttctatag aagaattaaa acttgcttta gctaaattaa      3480
     aaaagaaaaa tccaggtttg gataatatac caatagaatg tatcaataaa gcttctacaa      3540
     tggctcaaca acatatgtgc aacatattta atgagatact attaacaaaa aaaattcctg      3600
     aatcatggaa aacaatttta atatttgccc agttaaaaac ggaccaagat cctaattctg      3660
     ctagatctta tcgcccaatc gggattattt cagctattag aaaattattt gagaggattc      3720
     tacttaacag actagaatac ttcctagaat ccaataacaa gctctcccca tttcaatttg      3780
     gctttcgtaa aggtaaaaat atctgccaca acttgatcca acttagcacg caagcgtaca      3840
     aagctatagg aaataaagaa tacacgccca ctattttcct ggatatagaa aatgcctata      3900
     ataatgtaaa ttctgacatc ctatttgaga aacttctgtc caaaggaata aacccagatt      3960
     tcactaaaat aatcctaaat ctaattacta ataacgatat gttcctccga aatcaattca      4020
     caacgatggg tcctcgccga ataccaaaag gacttacaca aggaggcatt ctaagcccct      4080
     tgttatacct aatatactct gctaacctac attctaaact aatcttcttt agccatatct      4140
     cagaatttgc agacgatgtt aacattttct cccaaaataa atgcctagat gaagcaatca      4200
     atgtggtggt aagggacttc tataaccttc aaacagaaat ctatgaacta ggattagact      4260
     tctctatgaa aaaaattaaa atcctaattt tcactaatcg tagaatccct cctaactact      4320
     ctattaatct taatgatatt aacattccta tctcatcaaa tgctagatat cttggcctca      4380
     tatttaataa taaaatgaaa tggcactccc accttaaatt tattaaagaa aaagtagaga      4440
     cgaaactaaa tattctatca tacctaaatg gagccgcatg gggtgtcaat caaaatgttt      4500
     ctagactctt ataccttagc atgataagac caataataga ttatggcatc actgtctact      4560
     gcaataacta tgaaatttta gataaaacca ataaaataca aaaccaatgt atcagaaaag      4620
     ttctaagcgc tctaaattca acacatacta ataaccttat tgtagaatca gcaatcccca      4680
     ctatccaaca taggttcaac tacctaacag ataagctaat tataaaagct atgagctatg      4740
     aaaacaattc gatcattaat gacctcaaac tcttggaaat gtctgtcttt aatagcccct      4800
     ggtcgtcaaa taaacaattc cctctaattg tccatagatg gcttaaatta aaaatatacg      4860
     agaaagagat tgctaaggtt agcttaccac cctcattatg ccaagaccct aaatttcaat      4920
     acttccaacc atcaatcgac tttctaaata taaaaaaaaa aacgaaattg aaaatcaatc      4980
     cataattcgt aataaattcc gagaccattt caatactaag tacaatcaaa tgacccaaat      5040
     attcacagat ggagcgaaaa cagatacgta ggtaactgct gtctttacag taaatgactt      5100
     tttcaaacta tttagactct ctgaatattc tacaattttc gatgccgaag ctatagtcat      5160
     agaagaagcc gtgaaataca ttattaaaaa taatataaaa gatctcctta tatgctcgga      5220
     ttctaaaagc gttttaacca cccttctaaa tcgtaaaaac gatctaactc ctactttaat      5280
     gaacactaaa aggccccttt tcaataacca aaataataat atccatatgc tatggatacc      5340
     tagccatgtt ggcattcctg gcaatgaaaa agcagatgcc ctaacaaaaa tcctcccact      5400
     agctaataaa attaacaata aacttcatta caaacaattg ctaccagtca taaagatgaa      5460
     tatgctcaaa gaatggaact tagaatggaa tgcttgcact tggaaagggc aaaaactaaa      5520
     attaatccaa ccaaaaatat caaaaaaacc atggttccac aaattccatt ggaacagatc      5580
     ctctattaag aactttataa gattacgaat aggacatggt ctattcccaa ctcaccttaa      5640
     acgcataaac ctcaaagata ccgataaatg tgaatgtggc ctgctaggcg atctaaacca      5700
     tatcctcctt ccaatgcgaa aaactaaaag acagagataa aatgtttcaa gacttaaaaa      5760
     atataaaata tctccccccc tacaatataa cttcattatt acataaaccc tcgttaagaa      5820
     aatataaaat aataaataac ttcctaacta ccaataacat atccctctaa aggtcctatc      5880
     ccataactac taaaatttcc actagtccaa cccagtaatt catacaaccc gtctattccc      5940
     taccaaacaa cttgtcctga ttgttcactt ggtatgttct ccatggctca gtcaattatt      6000
     ttcttactag tcgctatgtt gagcctctta gcgtgaagct ggtgtagggg actcttacct      6060
     tactatatac ccacccaact ctctaaaaac cttaaaaaaa tcctactata cactcctatt      6120
     ctttaaaccc ctcgtaccat taaataacct cctctgtcta tagatggctg tagattccta      6180
     tcttatcaat acaaaggaat agaagccaaa aaaaaactca aaaaaaaaaa aaaaaaaaaa      6240
     aa                                                                     6242
//
ID   I-8_DBi     repbase;    DNA;    INV; 4469 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   I non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4469
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 932-932 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4469 BP; 1800 A; 1161 C; 553 G; 955 T; 0 other;
     cctgtagtct acctgccaac aaccaaaaac aacaactaac aactgcttat cagaaaaaaa        60
     caaacaagtg cgtaaaacaa aatagtaaaa aacaaaaaca aaaacaacta actcaaaatc       120
     catgtgccgg gcgccagccc gaaaacaact acaacaatgg acaaaccacc ggacattaga       180
     agtggtacat caatgtacaa caaaaaccca ggtgaaccaa aattcatgat cattaaagga       240
     acagacaaca aatcactcga gaatcttaac cctttcatac ttaaaaaaac gattgacttt       300
     acatgcgatg gtgaggtgga atcttgcaaa aacacccgtg ccggatacat tttgataaaa       360
     actaaaaaca ccttacaagc aagcaaatta cttaaattaa acaaaattgc aaacattgaa       420
     gtaactgtct ctgaacacaa aaccctaaat ttttctaaag gagtcatata ttgcaactta       480
     cttcgcaaca taagcgaagc agaaatctta gacgaactaa aaccacaata agtcgccgaa       540
     atgcgaaaaa tattgaaaaa aaaaagatca atccacgact gaaactggtc taatcatcat       600
     tacatttgct tcgcttaccc tcccagaata ccttaacatt gaatacgaaa aaatacgcat       660
     acgcccatat atctcgatgc ctctgaggtg tatgagacgc ttacgttttg gacacccaac       720
     cccatcctgt aagaacccta atgaactttg taggaactgc tctgataaag ttcacacaga       780
     gacaaatgag acatgccact acgaaaaaaa ctgcataaac tgcaaaaaca tccccgatac       840
     cgactccaaa cacaacccac tagaccgcaa ctgtccaaca ttcaagaact aacaaacatt       900
     aaaattacag aaaaagtcga tcacaacaca gcacttacaa tataccacac tcgccacaac       960
     catccacttc ccataagctt cgcctcaatt gtatcaaaaa atctaaccaa cactacaacc      1020
     tcaacactca gcaactctaa taaaaacgca ctacaaaccc gccaaagcaa accacctaca      1080
     tcctacgacg acatcttatc caacacaaga ccttcactac ctctattaac aacccaatca      1140
     ccaccccaac acatggacac agacacattc aacatggatt tcgacactcc caccacctca      1200
     aaacatatga caagcgtaaa aacacaggac cttaaactcc gaattttttc tagcgacaaa      1260
     aacaaaacac tatcttcaaa cctaaaaccc acaaaagcta atcaaacaaa aataaaaaag      1320
     tcagatccag cagtagacaa caaataggca caaaatcacc cacctcctcc accaaatcca      1380
     atcaaccttt aaaatgacca tgaaatttgt acaatggaat atgaacggat accttaacaa      1440
     ttactgcgaa cttcaattaa tcattaaaaa acacttacct cttttaatag ctacaagaaa      1500
     cacatataaa acaccccaat ataccaatac ctgttaatta cgccctaata ggaaaaagca      1560
     cctcatcgtc acacggaggc gtagccatcc tggctcataa atctctgcaa accaaagaaa      1620
     taaccctaaa cgatgacttt gacgcagtat gcttagaagt aacctcgaaa atcaaattta      1680
     gactcatctc ggcatacatc gctccaaata aagctttctc attacaaaac cttcaggctg      1740
     tattagacaa ctctcccaca tccacaattg tcactggtga cttcaacggc tggcacaaaa      1800
     actggggctc aaagcaaaac aatcctaggg gaaaaatact agagaaatat ataacacaat      1860
     ctaactacat tcttctaaac gatatgtctc ctacacattt cagcacacat agctcactaa      1920
     caaatgtcga tcttactttc ggtagccaac tccttaaaat tgacagtacc tggcgcacag      1980
     aggataacct ttttggaagc gatcacttcc ccatcataat taacctcttc acatcaaata      2040
     ctgccaactt gcaatcaacc acacgcaaac ccactttcat tattgataag gcagatggca      2100
     taaatttgcc aagctaacag aaaacttctc tgcacaacga ccaccgagca caaacataaa      2160
     caaagaagct gcaacaatac aaaaaattat cctttcgagc gctcacaagg ctataccaca      2220
     aacacaccca acgggtaagc ctcataattt accatggtgg aacaacaatc tcaaaaaact      2280
     acgagacgat aaaatgaaaa aatggtacgt acttaaaaga aaaatatcta catcaaacat      2340
     tgtacagtac aaaagggcaa atgccctatt taaactaaca ctcaaacaag ctaaaaaagc      2400
     aaacattaac aaattcacat cgcaaatctc acctgacagc caacccaaat cgatctggag      2460
     caacctccgt cgcttttgcg gcattaaccc tcaaaaacac atacactgta tattcaaccc      2520
     atccacaaaa caaaacacta ataaaaaatt tgaaattgct caactctttt gccaaaattt      2580
     ctcagaaacc tcctccgaca gcaatttttc aagtaccttt atcaatcaca aacaaacgtc      2640
     acttagcaat accattcacc ttccacatat tcctagcaaa agagcaaccg aaatagaaaa      2700
     acccataact gcaatagaat tttcagcagc attaactaca ttaaaaggaa acacaccagg      2760
     atttgacaga atcaactaca caatgctaaa aaacctggat aaaacaacaa aaaacagaat      2820
     tattaacctc caaaacgcca taccaaacaa ctacatccca caaacataca aaaatagctt      2880
     aataatactg atcctaaaac caaattcaga caaaaccttg cttaactcgt accgcccgat      2940
     cgcactaaac tcatgcctag caaaactgct tgacaaaata atagcaaaac ggccgtggtg      3000
     gtttgtaata acgacaaact aatccataac agtcaaactg gctttagaaa ggggaaatcg      3060
     gctatagaca gtctactact catagaccat cttttagcac gagctctctc aagaagaaac      3120
     catgcatcca ttatatcact agactttgca aaggcctttg atagaattgg catccactca      3180
     atacttgacc aacttataat ctggaaaact ggcccaaaaa ttattaacta cgtaagaaac      3240
     tacatgacaa atagaaaact actcgtgcgc attgactctg aaacctcctc cttttatcca      3300
     atgcaaaacg gcattcctca aggctcccca ctctccgtgg tcctgtttgt gatcgcatat      3360
     aactcactaa cagaaaagct cacacttcat ccgaacatca gcctaagcgc atacgcagat      3420
     gacttcaaca tcatcctaaa actaaaaaac aaaaaaacta aatataaacc taaatccgat      3480
     aatatccact attatagact gggcagaata ctcaggagcc atgttatcta ccacaaaatg      3540
     caaacacctc cacgtttgca gaaaacataa ctgtaactgc accataacaa caggaaacac      3600
     gcaaatgcaa gaagtaacat cattaaaaat ccttggtctc cacttcaata acaaatacag      3660
     atggaatact ctcacagaac tactaaacaa caacctcaaa cagtatatta acgtaataaa      3720
     atatctctca aacgcaaagt ttaactgcaa cacctctaca ctcctaaata taacaaaagc      3780
     aaccatctct caaaagcaga ctacggcctt ccaatctacg gctactgccc gtacacaaca      3840
     ctgcgcaaag taaagacaac aatcaacaca gcctttagaa ctgccctcgg agccttcaga      3900
     accaccccca aaaataacat actatgcgaa gcaaatgcag acgctttaga agacatacga      3960
     gaattagtgt tttccgcaga gctactggca ataatagaag cactgcaatt acataaaact      4020
     aaaagaggca aattttgcat atgctcaggc tcgctctctg ccatcgacgc aattaaaaac      4080
     actaacaaca gcgaacacta tatctcaaag gctcgtaatc ttctacaaga aaacaataat      4140
     aaatttaaac tgctttggat ccccggtcac gtgggaatac ctggaaacga acttgcagat      4200
     gccctagcaa aaaacgctac aagacaacca ctcgcaacca tggaaaactt aaacacgcag      4260
     gacatattta gatatattaa aaatacatat ctcttgaaaa tgcaatcaaa catatccaaa      4320
     acttcacgct ggtaccaagc aattaatcat ccacaactca actgccacca aattaccaaa      4380
     aacattcact catcgatctc acgtagagac cagataataa taacaaggat caggcttggt      4440
     cacacaaaaa ttacacatac acactatat                                        4469
//
ID   I-8_DBp     repbase;    DNA;    INV; 5344 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5344
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 708-708 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1391
FT                 /product="I-8_DBp_1p"
FT                 /translation="MPPDINRLFKSSDTGPKFIIIKRTDNKTFEHVCPFLI
FT                 KKVIDYTCNGVVESCKKTRIGGLLIKTKDTLQAIKLKKLSTFHEFPVSVNE
FT                 HNTLNFSKGVIYSNDLRNIEEEIILQELKSQNVTEIRKIKKMDKNELKETG
FT                 LIIITFASLTLPETMMIGYEKVNIRPYIPLPLRCRNCLRLGHPTTACKSNT
FT                 LCNNCSAEKHTSIDETCTNEKFCINCKFDLPTNKHSPIDKACPAFIKQKEL
FT                 TSIKTLEKVDHKTAVKIYYTRHIHQPALYSTILAEQPSKNATIPTKPPSHF
FT                 SDHQTAXKPSKNITPAQQQQRKATSYDDLEVPMDTTPTLASTSKSKSTSTL
FT                 SSSLSEELKLKIYTNKQNTLAKPLKSKEKNEQKPKKNNKITNHLLNSDSDS
FT                 I"
FT   CDS           1454..5029
FT                 /product="I-8_DBp_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLKVLQWNLNGYINNYSQLQVLIKNHNPKIISLQETH
FT                 LLSTQNIPIPINYTFYHENTAINGYGGVALLIHNSIQQQIVPTNAIDFDTI
FT                 AVKIHSKIEFTIISSYIPPSKPFKIQNLRNIYDSIQPPFLITGDFNSWHRS
FT                 WGSQSNNTRGNIIFKYINQSSLITLNNGSPTHFTTHHTFTHIDLSIASPLL
FT                 SLSSKWYTDNSLSGSDHYPIHIDMFEQSITCPVERPRFNLKKANWPLFQEI
FT                 SEKLSNERSPSSNINKEAANITKIIIQAANETIPQSHKFKIKKTVPWWDPT
FT                 LQQLQNEKSLCWRTLNRNIDMTNILAYKKANAKLKREIKIRKRTSIQDFTA
FT                 EISPKSSTLKIWSNINRFCGLKTQHNIHCLTDPNNPTQNILDNKEIANTLS
FT                 THWSNSSLDNNFSSTFIQQKSNSTHDSSHTPSTIALSIEKDITMIEMLASI
FT                 NQLKGTTPGRDRISYPIIKNLSPSLLIRLLNLFNNILNSHIPQQFKVSTVI
FT                 PIPKPNLDKTSIDSYRPISLNPCIAKVMDKIISKRLWWLASNCKLLDSRQF
FT                 GFKKGKSISDSLAILDYQITSSLSTKNHASIISLDFAKAFDRVGIHSIMDE
FT                 LKDWKIGPKIAKYIFNFLTNRKISVLANKVYSSSQPLDNGIPQGSPLSVIL
FT                 FVIAYNKLNQIIAKQKNCQFTAYADDYTIIYKLNKQITNLNLNPLFREILI
FT                 WCDYSGAKLSDTKCKHLHVCRKRNCNFTFLPSNITLQDVDTLKILGITINK
FT                 KYKWNNHIENLTLQLSKRLNIIKCLSSNKFECNVSTILYVVKAILMSKIDY
FT                 GIHLYGNAPKSSLNKIKTLYHTAIRHTFSAFRTTPINNLLLEANIRPLEFR
FT                 ALHATQKNFKIILNSKHSPIEKIYKNLTKTKKIPKIPSSLYNTIKLCNQLN
FT                 ITMAPITTKKEKTPHWLGSQTITNTSLNSSNKTNTTPIAYQQNFKEIVNQM
FT                 KNRTFLYTDGSKSPKGVSYSVTTDNEIILYKLLPEFSSIFTAEIAAILAAC
FT                 IYAKQNRGKYVICTDSLSSLXAINNTNNQNYYTSEIRNIVGKYKTDKLTLL
FT                 WIPGHCGIKGNDLADTTAKNSHNFPLVTECNYNPSDISKYIIKNLQTLDCT
FT                 TLTKASPYYKLICHEKATPEIVKNTSRADLKKFSRIRLGHTNLTHNYILNK
FT                 SPPTLCPNCNIPLTICHIFIECPLYDNKRINRP"
XX
SQ   Sequence 5344 BP; 2120 A; 1393 C; 610 G; 1219 T; 2 other;
     cagtttcact ctaagcttta aggagtaaag acgtgtgact agtgagcaaa ccccagaccc        60
     aactcttatc agttaaaaac aataactact acaaaaacaa gtgtacaagt gcacaaaaca       120
     aatatcgaaa aaaagcaata aaaaacaaaa aatctactga tcagttccaa aaaccccagc       180
     agggcacctg ccctacaaca acaacaatgc ctcccgatat aaataggctt ttcaagtcaa       240
     gcgacaccgg ccccaaattc atcatcataa aaagaacaga caataaaaca tttgaacacg       300
     tatgtccctt cctaattaaa aaagtaattg actatacatg caatggtgta gtggaatcgt       360
     gcaaaaaaac aagaattggc ggtctactaa tcaagaccaa ggacacactc caagccatta       420
     aactcaaaaa gctgagcacc ttccacgaat ttcccgtatc agttaatgag cataataccc       480
     ttaacttctc caagggagta atttactcca atgacctaag aaacattgaa gaagaaatta       540
     tactgcaaga acttaaatcg caaaacgtca cagaaatacg gaaaattaag aaaatggaca       600
     aaaacgaact aaaagaaacc ggactcatca tcataacctt cgcatcactg acactcccag       660
     agacaatgat gattggttat gaaaaagtaa acatacgccc atacatacca ctcccactca       720
     gatgccgcaa ctgcctcaga cttggccacc ccacaacagc ttgcaaatca aacacactat       780
     gcaacaactg ctccgcagag aaacacacat ccattgacga aacttgcacc aacgaaaagt       840
     tctgcataaa ctgcaaattc gacctcccaa ccaacaaaca cagcccaatt gacaaagcat       900
     gcccagcgtt cataaagcaa aaagagctga catcaattaa aaccctagaa aaagttgacc       960
     acaaaacagc cgtcaaaatt tactacaccc gacacataca ccaaccagca ctatactcta      1020
     ccatattagc agaacaacca tccaaaaatg caacaatacc cacaaaacca ccttctcact      1080
     tctccgatca ccaaactgca gscaaaccat ccaaaaatat cacacctgcc caacaacaac      1140
     aaagaaaagc aacatcatac gacgacctcg aagtacccat ggacaccacc cccacattag      1200
     cctcaacatc aaaatcaaaa tcaacatcaa cactcagctc atccctatca gaagaactca      1260
     aactcaaaat ttacacaaac aaacaaaaca cactcgccaa gcccctcaaa tctaaagaaa      1320
     aaaatgaaca aaaacccaag aaaaacaaca aaatcacaaa ccatttactt aacagcgata      1380
     gcgacagcat ttaaacttag cctacataca agataatacc atatagacta tcaaccaaat      1440
     cttaatttta acaatgctaa aagtcctcca atggaactta aacgggtaca ttaacaatta      1500
     tagccagttg caagtcctta tcaaaaacca caacccaaaa ataatatcac tacaagaaac      1560
     ccacctactc tccacccaaa acatccctat cccaattaac tatacctttt accacgaaaa      1620
     tacggctata aacggatatg gaggtgtagc acttctaatc cacaactcaa tacaacagca      1680
     aatcgtaccg actaatgcaa ttgactttga cacaatagca gtaaaaattc actccaaaat      1740
     agaattcacc ataatctcat cgtacatacc acccagcaaa ccttttaaaa tacaaaacct      1800
     cagaaacatt tacgacagta tacaaccacc cttcctaatt acaggagatt ttaacagttg      1860
     gcatagaagt tggggctcac agtccaacaa tactagaggc aacataatat ttaaatatat      1920
     taaccaatcc tcactaataa ctctcaacaa cggatcacca actcacttta ctacacacca      1980
     taccttcacc cacatagacc tttccatcgc atcaccctta ctctccctta gctccaaatg      2040
     gtacacagat aactccctat cgggtagtga tcactatccc attcatatcg acatgtttga      2100
     acagagcatc acctgccctg ttgaaagacc cagattcaac cttaaaaaag ctaactggcc      2160
     cctttttcaa gagatttccg aaaagttatc caacgaaaga tctcccagct caaacataaa      2220
     caaagaagca gccaacataa ctaaaataat tattcaagca gccaatgaaa ccattcccca      2280
     atcacataaa tttaaaataa agaaaactgt tccatggtgg gacccaaccc ttcaacaact      2340
     ccaaaacgaa aaaagcttat gttggcgtac tctaaacaga aacattgaca tgacaaacat      2400
     acttgcatac aaaaaagcaa atgccaaact taagcgggaa ataaaaatta ggaaacgaac      2460
     atctattcaa gactttacag ctgaaataag ccctaagtcc tccactctca aaatatggtc      2520
     aaacataaac cgcttctgtg gcttaaaaac acaacacaac attcattgcc ttactgaccc      2580
     caacaacccc acacaaaaca tacttgataa taaggaaata gccaacacac ttagtaccca      2640
     ttggtctaac tcatcactcg acaacaattt ttcctcaacc ttcattcaac aaaaatcaaa      2700
     ttcaacccac gactcctcac acaccccatc tactattgcc cttagtattg aaaaagatat      2760
     taccatgatc gaaatgctag cttccattaa tcaacttaaa ggcacgacac cgggacgaga      2820
     tcgtattagc tacccaataa taaaaaacct atctccaagc ctactgataa gacttctcaa      2880
     cctttttaat aacatcctta actcacatat cccccagcag tttaaagtta gcactgttat      2940
     acctataccc aaaccaaatt tggataaaac ctccattgac tcttatcgcc ctatctccct      3000
     caacccatgc atagcaaaag tcatggataa aattatatct aaacggcttt ggtggctagc      3060
     ttcaaactgc aagctattag acagccgtca attcggattc aaaaagggaa aatcgatctc      3120
     tgattctcta gccatactag attatcagat aacctcctcc ctgtcaacaa aaaaccatgc      3180
     ctctatcatt tctttagact ttgccaaagc ctttgacagg gtaggcattc acagcatcat      3240
     ggatgaactc aaagattgga aaataggtcc aaaaatagcc aaatatatat tcaactttct      3300
     taccaataga aaaatatcag ttcttgccaa taaggtatac tcatcctcac aacccttaga      3360
     caacggcata ccccaaggct cacccttgtc ggttatcctg tttgttatag cctacaacaa      3420
     gttaaaccaa ataatagcca aacaaaagaa ttgccaattc accgcctatg cagacgacta      3480
     cactataata tacaagctta acaaacaaat aactaatctc aacttaaatc cactatttag      3540
     ggaaatccta atatggtgtg actactcagg agccaaactg tcagacacca aatgtaaaca      3600
     tttgcatgta tgcaggaaaa gaaactgcaa ctttactttc ctcccatcta acataacact      3660
     acaggatgta gacaccctaa aaatcctagg aataacaatt aataagaaat acaaatggaa      3720
     caatcacatc gaaaacttaa ctttacaact atcaaaaaga ctcaacataa taaaatgcct      3780
     atccagtaac aagtttgaat gcaatgttag cactatcctt tatgtggtaa aagcaatctt      3840
     gatgtccaaa atcgactatg gaatacattt atatggcaat gcccccaagt cctccctaaa      3900
     caaaattaaa actttatacc acacagctat ccgtcatacc ttctccgctt ttcgtacaac      3960
     accaataaac aatttattac ttgaagcgaa cataagaccc ttggaattta gagcattaca      4020
     cgccacccaa aaaaacttca aaataatttt aaattccaag cactcaccta tcgaaaaaat      4080
     ttataaaaac ctaactaaaa ccaagaagat tccaaaaatc ccctcctccc tctataacac      4140
     tattaaactc tgcaaccaac tcaacataac aatggccccc ataactacca agaaagaaaa      4200
     aacaccacac tggcttggca gccaaacaat cactaacacc tccttaaatt catccaacaa      4260
     aacaaacaca accccgattg cctatcaaca aaattttaaa gaaatcgtta atcaaatgaa      4320
     aaaccgtaca tttctctata ccgacggctc aaaatcacct aaaggcgtat catatagcgt      4380
     caccacagat aatgaaataa ttctgtacaa actactccct gaattctctt ccattttcac      4440
     agcggaaatt gcagcaatcc ttgccgcatg tatatacgcc aaacaaaata gaggaaaata      4500
     cgttatatgc accgactccc tctcctcctt aaawgcaatt aacaacacca acaaccaaaa      4560
     ctattacaca agcgaaatac gaaacatagt aggcaaatac aaaacggaca aactaacttt      4620
     gctttggata cccggacact gcggtataaa aggtaatgac cttgcagaca caacagctaa      4680
     aaactcccac aacttccctc ttgtcacaga atgcaattac aacccatcag atataagcaa      4740
     atacatcatt aaaaacttac aaactctgga ctgcacaaca cttacaaaag catcccctta      4800
     ctacaaatta atctgccacg aaaaagctac ccctgagata gtaaaaaaca cttcacgggc      4860
     agacttaaaa aaattcagca gaatcagact tggacacacc aacttaaccc acaactacat      4920
     ccttaacaaa tccccaccaa ccctctgccc caactgcaac atacccctta ctatttgtca      4980
     catttttatt gaatgccctc tctatgataa taaaagaatc aaccgacctt gataatacaa      5040
     tagagaaaat aacttcctac agaaacttaa ataaaacagt agacttccta aaagctacga      5100
     acctgtacca cctaatttaa tagcatacct accctctaac ttctactcaa tacctacatt      5160
     tatataatca tattactact taagcatttg aattagaaca aaatcttgca aacaatcact      5220
     ttaaatctta actcaaataa gcttaaggcc tcagttgcta tagctttaat tatcaaacta      5280
     agcgcgaatt tgtaattttc gtttagctgt taaataaata aataaataaa taaattaata      5340
     ataa                                                                   5344
//
ID   I-8_DTa     repbase;    DNA;    INV; 3258 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.11, Created)
DT   02-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3258
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (02-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 3258 BP; 1061 A; 865 C; 505 G; 827 T; 0 other;
     attttaaata actagaacta acttaaacac cttataaaag accattcacc cgatataata        60
     tttttggagg aaacctatct gccatacaat tttactaatt tcttttcccc taaaggatat       120
     actagttatt tccacaattt cctgcaaaac accgtagcca agcaagggat cctcacacgt       180
     accaaaatat aaactccaac attctatgct cagtactgca gcttagtatt gaccaaacca       240
     taaacattat aagctcctat atccccccca atcaaagctt tacattttct gacgtatcaa       300
     ataccctgga taaccttaat gggacatcta tacttctcgg tgaccttaac tcgtggagtc       360
     ctttgtgggg ctccccgcac acaaacacaa gaggaaaaaa aatcgaacga gctattcaag       420
     aaagcaactt aaaagtcctt aacgacggct ctaccacgca cctttcaacc catatcacct       480
     tcactcacat agatgtctcc ttgatatctc caaagatacc tcatagatgt agctggtctg       540
     tatcagataa ccttcacggc agtgatcact tcccgataac cattcacatt tctgcaccaa       600
     cccaccccga taatactctc ccgctaccca aattcaagac tgacctagcc aactggaaac       660
     gcttcaatga aaactgcgaa aaatcagctc ttaactggac agccggttgc ctaaatcagc       720
     aagtcgctca aatgacgaaa gccattcgag cagctgcaaa ctgcagcatt ccccaaacaa       780
     aacgagtgat ccataaagaa aaagtgccat ggtggaactc tgagctcaaa cagctcaggg       840
     accggaagaa acttttattc tcctatcata aaagaaatat gtccgacaca aaccatataa       900
     gttacaaaaa agctaacgct cttgaaaaat tcacttcctg gatttccccg ttatccaccc       960
     caaaaaaagt ttggtccgat ggtaaacgtt tagctggcat tgcaccccca cctttcaaat      1020
     acatcaaatc ggactcaggt actctatctg gatcctttaa catcgccgaa gagtttggcc      1080
     ccgcctggtt taaatactct tccgacagaa acttttcagc agaataccta ctagaaaaaa      1140
     atctgtatct atcagaacct tatctcccag attcactatt aacattcgct acttgcttag      1200
     attccaattt cacccttttg gaattagaaa cctcaatagc aagcgtaaaa ggaaaaagtc      1260
     ctggggccga tagggtgtca taccctatgc tcaaaaactt accacacctt ctgaaggcca      1320
     aacctttgga aatctttaat gtaacgctac aatccggaaa atacccacat acatggagct      1380
     tagccaccat tatccctatt ccaaagccta acaaaccccc ttctgatatt aacagctacc      1440
     gtcctatttc ccctttgttc tgtctaggta aaacacttga aaaataattg cccagagact      1500
     tctctgattt attaaccacc acaatctcat ctcacataat caggttgatt ttaaaagaaa      1560
     acatagcact gtggacgctt tgctgcgtct tcaacacttc gcgtcgaacg atctttctac      1620
     caaaagtcac gtatctatcc tggcgactga ttttgaaaga gccttcgatc gcgtggggat      1680
     tcattcactt tgtagattcg agcgcggggg cattgatcta aggctttaca accttgtcaa      1740
     ggccttcatg accaatcgct ctttcagggt tcgaataaac aatgtcacct cgaactccca      1800
     catcttgcac aacggaattc ctcagggttc tccactttcc gtagtcttat tcatgatagc      1860
     ttttgaagaa attaacagca ttttgtcgtg aaataaagat atccatatat cagtatatgc      1920
     agacgacgct atcattttca caaatataaa aaatgtcaac actgttaaaa aaaaaattgt      1980
     tgccaattaa atcgcaccta aaaagaattc aagcgcccta ccactgggca gtgcgccgcg      2040
     ccattcatgc attctccacc tctccaatac catgcacatt ggcagagtcc ggtcttccga      2100
     gttttcattc ccgcatagaa caaactacga tgatactcgt cccaaagcta tacacctcat      2160
     caaaccgcct actcactaag gacttcgcaa ccattttcaa gcaaaacccg aattacaaat      2220
     gtatatccac acttagacgt tgcgccagct acatcaaaaa gctcgaccta cctctaccca      2280
     accccatgaa gtcttttaaa tcgccagcat tttggggatc caaaaagccc aacataaaca      2340
     ctcaaatcta caaaggtgct aaacaagata catgtcctca agaattccaa aaacggtttt      2400
     tgagcgtaca atcagatctg ggcacaaaac ctggattttc accggtggtt cttgagccag      2460
     cgactcgacc acctttgctg tggttgactg caaccgaaac attattgcag gaggaaggct      2520
     tccgcccgcc atattaaaag cataccattt cgcctctaag aaccctggac aatttgttat      2580
     ttgcacagac agcctctcat ctatacccgc cctacgcaac gtaaaacaca acgatcccac      2640
     aatacaggaa gtaagccaca ttccaagttc acatccaaca aaaatcacca cactttgggt      2700
     tcccagtcac caagaaatca gtggaaacga actagccaac aaggccgccc aagaaataag      2760
     aaacgcacct tcctttctct tcaccccgtt taatgccaag gacatacaaa accaaattag      2820
     gctacacctt gaagaaaata aaatctccga atgggcactc attgtgcaca gatatcaaac      2880
     attaaaccca gcttgtaaca agttcaaccc ttcgcccaat accggaagaa ggtcttgcgg      2940
     gacactcaat ccactcacca acatactgat gggaacgtcg tggacaacat gccaactctg      3000
     cggtaatgat cttaccgtgg atcacctcct ggacacctgc agcagattac agagcattag      3060
     atttgcccta tttggcacac agcgagtatc agccctatta aaaaccccct cccaagagaa      3120
     tataataaac attaacaaat ttgtcaaaca agctaaatta atcttataac acacgtttcg      3180
     agtcgaaggc cccgttagct atgaaactgt ttagatttag tattgtatac ttgatttaat      3240
     tttgttaaaa taaaataa                                                    3258
//
ID   I-8_LMi     repbase;    DNA;    INV; 6131 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6131
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3141-3141 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(611..1474,1450..1845)
FT                 /product="I-8_LMi_1p"
FT                 /translation="WRYSCTTAARKWPHSKRLCVDSPSVTDCEMSQVPVSH
FT                 ASSTDGTGQANTERTXVQTSAPPATVTRPSINNRYSRTDAGPYIVFVESLD
FT                 KNIGKLHPMSVGKLLYSYSSHLKHDIVDISSSGKNRVKIELKTAAAANNLX
FT                 NVPAFKDHKFDVYIPNFLLHTYGIIHDVETSLTDKEIIDAMESVYPVTSIK
FT                 RYTKKHPSNPELTVPIPVCMVVFRSQTLPSHVAILGARCPVVPYVAPSFSA
FT                 QIAGVFIIGRTSVEAILVAADAAVSTKLIRARDDSDLFKLLWTAPCHIALD
FT                 STLSLRVMPHFSPPARATTCKGRTPRQEGHSVARPHIFAAVRSLLPSEFCG
FT                 LPAPTSKAFTATASRCTRAFHGATNAASGAPAAFTPKEDRYQRNDVPIADR
FT                 RVSLRHERHGEKTSFQTRLASGIFRR"
FT   CDS           join(2080..3126,3104..3964,3904..5472,5415..5783)
FT                 /product="I-8_LMi_2p"
FT                 /translation="MAEFKILQWNARSAIANKGVLQRELWMRKIAVAAISE
FT                 TWFQPDTIVRFQGYHVYRQDRDDGRGGVALFINNMLHHTPVLISHDDIESF
FT                 QAIAVNFSSPIGRITIVALYSRPRSYITIEEWYALVQQLEPPFLFCGDFNA
FT                 HNRLWGCAYNDRLGDGILDIIDEFNLIILNDGSPTLLPLPGQRPSAVDLTL
FT                 CSASVSSFFTWSVLSYPMGSNHYAILLSSPTSSPNTVCRPSRKWNVRRADW
FT                 SQYGAIMDTQLSSFPTELSPQTRYAHYRNCINVAASQSIPQTRVVTGSRRL
FT                 PVAWWNQECSRRVAQRRLACSRLKRQTTWENYLAYKRMDATTKPFSRPVRK
FT                 NIGRNLERTLEEICEQLSLHTPVGRIWSKVNSLKRKPMPPKRLQTWIDEFA
FT                 NIVAPPTAMPEPIDPTTNVAVEDLQDDLTSPFSLAELNSALPSSTDTSPGH
FT                 DQIHYSMIRNLSDDAKLILLNIFNDILREGYVPTDWTTQVLVPILKPGKDP
FT                 GQATSYRPIALSSCVCKTFERLLKVRLEWWLEHHDLFPRTQYGFRKGKSTY
FT                 DNITSLAMDIEKTFLTNGYLTALFLDFSRAYDNVLIHKLINKLQLLHLPXK
FT                 VLRIIYRLLCCRTVYIRDQDNVLHGPESFPVASRKVRYPGQCVTWPRIVSR
FT                 GLPQGAILSPLLYALYVADLDSIFHPTVKVLQYADDVCIYAHSSCFWVTNI
FT                 WLTSACEKLAEWELEHGLTLSPEKSTVVIFTRKRQNYFSPDLQLGPYKLPV
FT                 RSYAKFLGVYFDSKLTWTRHVEYLLDKVDTTANILRMLARVWWGADPTVLL
FT                 TLYKVLIRSVLDYGSIVYATAAQSTLRKLDVLQYRMLRLVLGAMKSTPTNA
FT                 LLVEASEMPLTIRRQMLSDIFLLSRASIFDCASLKTVHQFWRLTEMHHRRG
FT                 MTRVPLLVRSYEKWRHLFPLIIQDTKLPCFRYSYHLFFNPVPVTHLPSDYT
FT                 TGTNITLDVEQFLLRNWPQHAHIYTDGSKTEAGVGYAFFCPSNGTYQMFAL
FT                 PPASSIYTAELLAIREAIYYGTRTFDSILILTDSQSVLKKLQHPTFDKRTN
FT                 RYILDVLEAITNAQTVGIDIHLLWIKGHQGIPHNETVDRLAKRSITEGQHR
FT                 PTPIPYTDFRTTIRKAAYRTWDHEWHLSQAFKGGHLAAIQPNVSSDHGFHR
FT                 GRTPGSYTTKCLLRPWFSSMTLSRRHATSIIRMRLGHGCYPAHLHRLKIIA
FT                 SRHCDKDATAVADLNHIILACTKYTAAQSVFYRTLVARGYPLPTSVTVLLH
FT                 GFDKFKYSLLKDYLKVTGIQL"
XX
SQ   Sequence 6131 BP; 1615 A; 1634 C; 1312 G; 1558 T; 12 other;
     agtctacttc cgcctcccgc ggagtccgga cgcgtttact gctgcgctct gtgcggtcgc        60
     gctttgttta cgtttcgcgg acgagtgtgg tgckacgtac ttattcttcc gtgcgtttgt       120
     atactcgtat ctgccttttc ggggagaaac gttcacgtgc agagtagtgc gcgccggaat       180
     tgtgtgtgtt gtctcaacca cacgttcgtg gtagcagtac tactcagtgt atcttcgaaa       240
     tggccgaccc acctaatacg ggtcaggtca tccagtccgc catggaaata tgtaatcaac       300
     ctgcagcgac ggctatcccg ctgccggtga tgtccgacaa ccctgctgac gtacagcaga       360
     gtcaactacc aacacaggac ctacaatatg cacaacaaca agggccacag cagcaacaag       420
     aaccgcagct tctacaccac caacacctac aattccagca gcaactggcc cagcagcaac       480
     agcttcagct actgcagctg caacaacggc aacaccagca attcctccag caacaacatc       540
     aacaacacga gttacaacag gttagtcagc acctcagcta ttcctgcgac ccctccagca       600
     tagtacctag tggcgataca gctgcacaac agcagcaaga aagtggcccc atagtaaacg       660
     actgtgtgtc gattctcctt cagtcacgga ctgtgaaatg agccaggtac cggtttccca       720
     cgcgtcttct accgacggca ccggacaggc aaacacagaa cgcackcmgg tacagacatc       780
     tgctcctcct gccaccgtta ctcgaccgag tatcaataac cgatacagtc ggacagatgc       840
     aggcccmtac attgtcttcg tggagagctt agataaaaac attggcaaac tccaccccat       900
     gtcagtgggc aagttattgt attcctacag ctctcacctc aagcacgata ttgttgacat       960
     tagttcmtca ggcaagaaca gagttaagat agaactgaaa actgctgcag ctgctaataa      1020
     cttamtaaat gtccctgctt tcaaagatca taagttcgat gtttacatcc ctaacttttt      1080
     actccatacg tatggcatta tccatgacgt agagaccagc ctaacggaca aagagataat      1140
     agacgccatg gaaagtgtct atcctgtaac aagtataaaa cgatacacga agaaacatcc      1200
     ttcmaatcct gagctcacag tacccattcc agtctgcatg gtggtgtttc gctctcagac      1260
     attaccctct catgttgcta ttctgggggc acgctgccca gtggtaccgt acgttgcccc      1320
     gtcattcagt gcacaaattg ctggcgtttt catcatcggg cgaaccagtg tcgaagccat      1380
     actcgttgca gcagatgcgg cggtcagcac caagctgatt cgtgcccgcg acgattccga      1440
     cctgtttaaa ttgctctgga cagcaccctg tcactgagag tcatgcccca tttttctcca      1500
     ccagcaagag ctacaacgtg caaaggccgt acgccacgtc aggaagggca ctcagtggcc      1560
     cgcccccaca tattcgcggc cgtacggagc ctcctaccct cagagttctg cggacttccc      1620
     gcccctacct ccaaggcatt tacagcaacc gcaagtcgct gtacaagagc gttccacggg      1680
     gccaccaatg ccgccagtgg cgccccagct gcgttcaccc ctaaggaaga caggtatcaa      1740
     cggaatgatg ttcccatagc agacagacgg gtgtcactcc gtcatgagcg gcacggggaa      1800
     aaaacaagct tccagacccg cctggcgtca gggattttca gacgttagtc acgaatattc      1860
     tatctcccaa catctaccac aggccccttt accacccaac ccgtatcctc ctcagtacgg      1920
     caaaagcagt gccaccacgt aacaatagtg aatacatcgt agagaaaatt atctggttta      1980
     tccttcacct catagaagac gcgaaaacaa tgccacctgg aactttacag atacagccta      2040
     ttcgccaact attaacgact ctccttactt ctaacaacaa tggcggaatt taaaatactg      2100
     cagtggaatg cgcgatctgc gattgccaac aagggtgtac ttcaacgtga actttggatg      2160
     cggaagatag cagtggccgc catctctgag acatggtttc aaccagatac catcgtacgc      2220
     ttccaaggat accacgttta ccgccaagac agagatgatg gtcgaggagg agtcgccctc      2280
     tttatcaata atatgctgca tcacacccct gttctgattt ctcatgacga tattgaaagc      2340
     tttcaagcga tagcagtaaa cttctcatct ccaattggtc gaataactat tgtggccctc      2400
     tacagccgac cacggtcata cattaccatt gaagagtggt acgctctggt acaacagttg      2460
     gaacctccat ttctgttctg cggggatttt aatgcacaca acagattgtg ggggtgtgca      2520
     tataacgata ggctgggtga tggcattctt gatattatcg acgagttcaa tcttatcatc      2580
     ctcaatgatg gatcccctac gttacttcca ttacccggac agagaccatc agccgtcgat      2640
     ttgactttgt gttcagcgtc tgtttcttca ttctttacat ggtctgtact ttcctatcct      2700
     atgggttcca accattatgc tattctgctc tcttcaccaa cctcgtcacc gaacacggtc      2760
     tgtaggccgt ctcgcaaatg gaatgtcagg agggcagatt ggtctcagta tggtgccata      2820
     atggatacac aactttcgtc gttccccacc gagttgtcac cgcaaacaag gtacgctcat      2880
     tataggaatt gcatcaacgt agcagcatcg cagtcaatcc cacagacgag ggtggtaact      2940
     ggcagcagac gactgccggt tgcctggtgg aatcaagagt gctcgcgtcg agtggcgcaa      3000
     aggagactgg catgtagccg tcttaaacgg caaaccacat gggaaaacta cctcgcctac      3060
     aaacgtatgg atgcgaccac caaacctttc tcaagacctg tgagaaagaa cattggaaga      3120
     aatttgtgaa cagttatccc tgcatactcc tgtcggaagg atttggtcaa aagttaactc      3180
     actcaaacga aaaccaatgc ctcccaagcg gttgcagacc tggatagacg agtttgccaa      3240
     cattgtagca cctcctacgg ccatgccaga acccattgat cccacgacaa atgtcgccgt      3300
     tgaagatctt caagatgatc tcacctcacc gttctccctc gctgaactca acagtgcgct      3360
     gccgtcctcg accgacacgt cgcccgggca tgaccagatm cattactcca tgatacgcaa      3420
     tttgtctgat gatgcaaaac ttattctttt gaatatcttt aatgacatct tgagagaggg      3480
     gtatgttcca accgactgga ccactcaggt attggttcct atattgaaac ctggaaaaga      3540
     ccctggtcag gcaacgtcgt atcgcccgat tgcattgtcg tcatgtgtgt gcaagacctt      3600
     tgaacgtctc ctcaaggtcc ggttagaatg gtggttagag catcacgacc tgttcccacg      3660
     gacacaatac ggttttcgca aggggaagag cacttacgat aatataacat ctcttgctat      3720
     ggacatcgaa aaaacgttcc tgacaaatgg gtatttgacg gctctttttc ttgatttttc      3780
     gagggcttat gacaatgttt tgatacataa acttataaat aaattgcaac ttttgcatct      3840
     cccgstaaag gtgttaagaa ttatatacag attactttgt tgccgcactg tttatatccg      3900
     tgaccaggac aatgtgttac atggccccga atcgtttccc gtggcctccc gcaaggtgcg      3960
     atattaagcc ccttgctata cgccttgtat gttgccgact tagactctat ctttcaccct      4020
     actgtcaaag ttcttcagta cgcggacgac gtttgtatat acgcccactc gtcgtgcttt      4080
     tgggtgacaa acatatggct tactagtgca tgtgaaaaac tggctgaatg ggagttagaa      4140
     cacgggctca cgctgtcgcc cgaaaaatct actgtggtga tattcacgag gaaacggcag      4200
     aattatttct ctccagacct tcagctcggt ccatacaaac tgcctgttcg gtcatatgct      4260
     aagttccttg gtgtttactt cgacagcaaa ctgacgtgga cgcgccatgt tgagtacctc      4320
     ttggacaaag tggacactac tgcaaatatc ctgcgcatgc ttgccagagt ttggtgggga      4380
     gccgatccga cggtactcct gactctatat aaggtcttga tccgctccgt tttggattat      4440
     ggcagtatcg tctacgccac tgcagcgcaa tcgaccctgc gcaaacttga tgtcctccag      4500
     tacagaatgc ttcgtcttgt tctcggagct atgaagtcaa cacccaccaa cgccttgctm      4560
     gtggaagcgt ctgaaatgcc gttaactata cgwcgacaga tgctgtccga tattttcctc      4620
     ctcagccgag cgtcaatatt tgattgtgcc tctctcaaaa cggtgcacca attttggaga      4680
     cttacagaaa tgcatcacag aagaggcatg acccgagttc ctttactggt tcgcagctac      4740
     gagaaatgga gacatctctt cccactcatc atacaggaca ccaaacttcc ttgcttccgt      4800
     tattcgtatc atctgttttt caacccagtc ccggtgacac acttgccgtc mgactacaca      4860
     acggggacca acatcactct cgacgtggaa cagtttcttc tccgcaactg gccacagcat      4920
     gctcacatct atactgacgg ctctaaaact gaagcagggg tgggatacgc cttcttttgc      4980
     ccctccaacg gcacctacca aatgtttgcg cttccgcctg cgtcatctat ttacacggca      5040
     gagttactgg ccatcaggga ggccatttat tacggcacac gaacatttga ctctatattg      5100
     atcctcacgg actctcaaag cgtgctgaaa aaattacaac atccgacgtt tgacaaacga      5160
     acgaatagat atatattgga cgtcttggag gccataacaa atgcacagac agtgggcata      5220
     gacatccact tactttggat taaaggacat caaggtatac cccataacga aacagtagac      5280
     cgcctcgcca agagaagtat tacggaagga caacaccgcc ccacgccgat tccatataca      5340
     gacttccgaa cgacgattcg gaaagctgcc tatcgcactt gggaccacga atggcacctc      5400
     tctcaagcgt ttaagggagg acacctggca gctatacaac caaatgtctc ctccgaccat      5460
     ggttttcatc gatgacgctt agtagacgtc atgcaacgtc tatcattcgg atgagactgg      5520
     gacatggatg ttaccctgcc cacctacacc gtttgaaaat catcgcttct cggcattgcg      5580
     acaaagatgc aacggcagtg gcggatctca accacatcat actggcatgc accaagtaca      5640
     cggccgcaca aagtgtattc taccgaacgc tggttgcgag gggttacccc ctccccacaa      5700
     gtgtcactgt cctccttcat ggattcgaca agtttaagta cagtttactg aaggactacc      5760
     tcaaagtcac cggcatacag ctctaatttt agagctggtg tgtttacctt gaacatgcac      5820
     agcgtgaaac tgcataagta attttatatt atattttgac ttttatttgt ctttgcacct      5880
     ctcatttggt cctatgctgt ttgcactttc gttgtattac atatgtcact cgtactgtta      5940
     aatatgtatt gttttatgtc ttgtacatat gatttttcta cttttattct aaggctgtat      6000
     gatgtgagat acttattaat attgtgctat acattgtaag aatctcaatt ctattgtaat      6060
     gttgccactg taataaccgc tggctgtatg gtcactgtaa ccaaaagcca taataaagaa      6120
     ttaaaaaaaa a                                                           6131
//
ID   I-9B_AAe    repbase;    DNA;    INV; 5795 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-9_AAe;
KW   I-9B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5795
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1363-1363 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. The consensus is ~80% identical to I-9_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           486..1622
FT                 /product="I-9B_AAe_1p"
FT                 /translation="METDGDSPNSKEDDHSAPLEAASKPFRVKLFPASFLG
FT                 PYPVYFRKKDKPINVLLISAEVYKQYKSVKEIKKISLDKLRVVFGSRGDAN
FT                 ALLESNLFSNLYRVYAPCDSCEISGVIYDEFLSCNDVIDYGLGIFKNKSIS
FT                 PVKILDCNRLSKLSFNGSNTNYVHSDCMKITFAGSVIPDFVSIDNVTYSVR
FT                 LYYPRLMHCTRCLLFGHTSNYCSNKPKCSKCGESHSSSECDKHSDVCIYCK
FT                 LNHSSIKECSVYKANQQKFNQQIKLKNRFSYSEILKASGDFASSNIYETLS
FT                 DYDDDNLNENSNQFIYKPPTKRKRANLLSGKINDNCDPQPSTSFDKSFPPL
FT                 DTTSNPKSIPGFQRVNDDCSNNKNSKENIDDSAKKN"
FT   CDS           1792..5493
FT                 /product="I-9B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASIDSKTLNVLQWNCRSIIPKLDRLKSLLSNYNIDV
FT                 FCLNETWLVECKNIHISSYNIIRKDRNTPSGGVLIGIRDGIQFKYLDLPPN
FT                 SSVECIAVTIKHNNIQFSIICFYIPPNSVFSLTQIKNILDSVPSPFYILGD
FT                 FNAHNIAWGSNNTDGRGNLIMELVDELNLNILNDGSFTRIAVPPAHHTCID
FT                 LSLCSNTLSFFSSWKIINDPNGSDHLPILIEISCSNCNSTCNESFVPDLYR
FT                 NVDWEKFSDLISFSLISFDYSLPPLENYKQFSKTLNHCLLKSQSKKIKSNI
FT                 CTKNRRHSFWWDNDCSIALKNKSEAFKKFRRIGSRENYFSYCKAEAQFTRV
FT                 TKYKKRNYWRNFVENLDRNSGLSSLWSVARNLRNYNFSPPNILEYSEDWID
FT                 TFASKICPAFVPRATSFKNNQKYNYFPELCALFSLEELDLALSITKNTSPG
FT                 IDNIKFIVLQNLPHEGKSHLLALYNSFLQQNIFPSEWRSIKVVSIVKPGKD
FT                 PSLVDSRRPISLLSCLRKLMERMLLNRLELWAENNQILSSSQFGFRKRCST
FT                 RDCTALLASQINLCFNRKQDMVSTFLDVSGAYDSVLIDLLFYKLNSFKIPY
FT                 IITNFLYNLFSFKIMHFFHDGSSKLIRYSYFGLPQGSCLSPFLYNLFTSDI
FT                 SSVIPNGCQFYQFADDKVISICGNNREIIRHFMQNALDNIDIWAHNNGFSF
FT                 SVSKTKFILFSRKRSPVNIHLYLDGYEIEQVDEYKYLGLWFDSKLSWNKHI
FT                 QYIQVVCAKRINFLRTITGTWWGAHPSDLITLYKTTIRSVLEYGCFTFASS
FT                 VQSKFCKLEKIQYRCLRICLKLMNSTHTKSVEVLAGIHPLKIRLHELNCKF
FT                 MIQCFSINHPIVNILKCLHDINPTCRILDSFNYCCSINVAPNSNHSLHFHS
FT                 FGIDIHSFQPNIDLSLHEELKQISNTEYSRFAPLFFKRKFIGLDAKQFYFS
FT                 DGSFTQGIAGFGVYNHYSAYFFKLQSPCSIFVAELTALYFTCSLIKQFLPN
FT                 IFIICSDSLSCLNAIKTINFNSKTHHIILKLKEELFYLHTQGYIIKFVWVP
FT                 SHSNIYGNEQADSLAKLGVRCGIWYDRQIASSEYYTELRKHSLNNWQISWN
FT                 SSDKGRWCHSIFPIVNQTTWYKKLSVGRNFICTLSRIISNHYICNSHLYRI
FT                 DISDSNLCDCCETYEDIDHIVFHCTRYIIPRNKFVSDLKNHHDHLPSSVRD
FT                 ILGSRFLPSLKLLYRFLNDASYYV"
XX
SQ   Sequence 5795 BP; 1805 A; 824 C; 897 G; 2269 T; 0 other;
     tcattgctgt agtaggcctt gaagtaacag gacgtgtttt tttttcaacg tctgacattt        60
     tttctctttt ttcaggagga gaaaattttt ccgtggctgc tcaagagttg aagttcgtga       120
     gtgctttggt gttgacgaaa gacgtttcgt cttggatttt tgcgaacgtt tggagggcga       180
     agatttcttt gaagtttatg ctgtgttttc cactgaggag gaattgttgt gaactttgga       240
     ctgaggactt ctttttcgaa ctgctggtgg caagctgttc aagagaactt ttggctttag       300
     aagcgttcca gtttctgtat tgcgtggatt ttgaagtttg aagttgactt tcaagaagag       360
     aaactttgac gtttttggat tgagctgagt acaattttta tgtttcttat ttctacaatt       420
     ttcttcattt gtagctttta ttaggttttt ttttgttgat taatattccc cgttgttttc       480
     caattatgga aaccgacggg gattcaccaa attcaaaaga ggatgatcat tctgcacctc       540
     ttgaggcagc atccaaacca tttcgagtta agttatttcc tgccagtttt cttggtccat       600
     atccagttta ttttcggaaa aaggacaaac ctataaatgt tttgttgatt tctgcagagg       660
     tgtataaaca atacaaatct gttaaagaaa tcaaaaaaat atctttggat aagttaagag       720
     tagtttttgg ttctcgtgga gatgcgaatg ctctacttga atctaactta ttttcaaatt       780
     tatatagagt gtacgcacct tgcgactcat gcgaaattag tggtgtcatt tatgacgaat       840
     ttttgagttg taatgatgtt attgattatg gtttaggaat ttttaaaaat aaatcaattt       900
     cacctgtgaa aattctagat tgtaatagat tatccaaatt atcatttaat ggcagtaata       960
     caaattatgt ccattctgat tgtatgaaaa ttacttttgc gggctctgtg attcccgatt      1020
     ttgtttcaat tgacaatgtt acatacagtg tgaggcttta ttatcctagg ctaatgcatt      1080
     gtactcgttg ccttttgttt ggacatactt caaattattg ttcaaacaaa ccaaaatgct      1140
     cgaaatgtgg tgaatcccat tcgtcatcag aatgtgataa acattctgat gtttgtattt      1200
     attgtaaatt aaatcatagt tcaatcaaag agtgttcagt ttacaaagca aatcaacaaa      1260
     agttcaatca acaaattaaa ttaaaaaatc gtttctctta ttcagaaatt ttaaaagctt      1320
     ctggagattt tgcttcttct aatatttatg aaacattatc agattatgat gatgataatt      1380
     taaatgaaaa ttctaatcaa tttatataca aacctccaac caagagaaag agagcaaatt      1440
     tattatctgg taaaattaat gataattgtg atcctcagcc atctacttca tttgataaaa      1500
     gttttcctcc tcttgatact acttcaaatc ccaaaagtat accaggattt caaagagtaa      1560
     atgatgattg ttccaacaat aaaaactcta aagaaaatat tgatgattct gcaaaaaaaa      1620
     attgacaatc atgataattc cattttgagc attttggaac aggtaataga tttattagaa      1680
     ttaaatgatt tttggaaaaa aactgattaa aaaatgttta ccagttttag cttttcttct      1740
     tgataaatta aattcttttg ggtccctctt ttcttcatta ttctcttttt aatggcttca      1800
     atcgattcta agaccctgaa tgttttacaa tggaattgtc gtagtataat tcctaaactt      1860
     gatagattaa aatcattgct gtcaaattac aatattgatg tattttgttt aaatgaaact      1920
     tggttggttg aatgcaaaaa catacatatt tcgtcatata atattattag gaaagataga      1980
     aatactccat ctggaggggt tcttattggg attcgtgatg gtattcagtt taaatatttg      2040
     gatttacctc ctaattcatc tgtagaatgc attgctgtta ctattaaaca taataacatt      2100
     caattttcga ttatttgttt ttacattcct ccaaattctg ttttttcttt aacacaaatt      2160
     aaaaatattt tggatagtgt tccttctcca ttttatatat taggagattt taatgctcat      2220
     aatatagcat ggggtagtaa taatactgat ggcaggggaa atttgataat ggaattggtt      2280
     gatgaactca atttaaatat ccttaatgat ggatcattca ctagaattgc tgttccacct      2340
     gcccatcata catgtattga tttatctctt tgttccaata ctttatcttt tttttcttct      2400
     tggaaaatta tcaatgatcc taatggtagt gatcatctac ctattttaat tgaaatttct      2460
     tgttctaatt gtaattctac atgtaatgaa tcatttgttc ctgatctgta tagaaatgta      2520
     gactgggaaa aattttctga tctaatttcc ttttcattaa tcagttttga ttattcttta      2580
     ccaccactag aaaattataa acaattttct aagacattaa atcattgttt actgaaatct      2640
     caaagtaaaa aaattaaatc aaatatttgc actaaaaaca gacgtcattc attttggtgg      2700
     gataatgatt gttcaatagc acttaaaaat aaatcagaag ctttcaaaaa attccgtcgt      2760
     attggatcaa gggaaaatta tttttcatat tgtaaagctg aagctcaatt tactcgagtt      2820
     actaaatata aaaaaagaaa ttattggaga aattttgttg agaatcttga tagaaattct      2880
     ggtttgtctt ctttatggtc ggtagctaga aatttgagaa attataattt ttctcctcca      2940
     aatattttag agtattccga ggattggatt gatacatttg catctaaaat ttgtccagct      3000
     tttgttcctc gcgctacttc tttcaaaaat aatcaaaaat ataattattt tcctgagctt      3060
     tgtgcattgt tttctttaga agagctagat ttagcgttat ctattactaa aaacacttca      3120
     ccaggaatag ataacataaa atttattgta ttgcaaaatc taccccatga aggaaagtct      3180
     catttattgg cattgtataa ttcatttctt cagcaaaaca ttttcccttc tgaatggcgt      3240
     tcaattaagg ttgttagtat tgtaaaacca ggcaaggatc cttcgttggt tgatagtcgt      3300
     agaccaatta gtttattgtc atgtcttcgc aaactcatgg aaagaatgtt actaaatcgt      3360
     cttgaattat gggctgaaaa taatcaaatt ttatcatctt ctcaatttgg attcaggaaa      3420
     cgttgtagta ctcgtgattg cactgccctt ttagcttcgc aaattaatct ttgctttaat      3480
     agaaagcagg atatggtttc tacttttctc gatgtttcag gagcttatga ttctgtttta      3540
     attgatctac ttttttataa attaaatagt tttaaaattc catatataat tacaaatttt      3600
     ttatataatt tattctcttt taaaataatg catttttttc atgatggttc ttctaaactt      3660
     attcgttata gttattttgg acttcctcaa ggttcttgtt tgagtccatt tttatataat      3720
     ttatttacga gtgatatttc ttctgttatt ccaaacggtt gtcaatttta tcaatttgct      3780
     gatgataagg ttatttctat ttgtggtaat aatagagaaa tcattcgtca ttttatgcaa      3840
     aatgcattgg ataacattga tatttgggct cataataatg gattttcttt ttccgtgtct      3900
     aaaaccaaat tcattttatt ttctcgcaag cgttcccctg ttaatattca tttgtatctt      3960
     gatggttacg aaattgaaca agttgatgag tataagtatt taggattatg gttcgattcg      4020
     aaattatcgt ggaataaaca tattcaatac attcaagttg tttgtgcaaa gagaataaat      4080
     tttctaagaa ccattactgg tacctggtgg ggtgcacatc cttctgattt aattacactt      4140
     tataaaacca ctattcgttc tgttttggaa tatggatgtt ttacttttgc aagttcggtc      4200
     caatccaagt tttgtaaact tgaaaaaatt caatatcgat gcttaagaat ttgtttaaaa      4260
     ttgatgaatt ctactcacac aaaatctgta gaagttttag ctggaattca tccgttgaaa      4320
     attcgtttac atgaattgaa ttgtaaattt atgattcaat gcttcagtat aaaccatcca      4380
     atagttaata tactgaaatg tttacatgac ataaatccta cttgtagaat tttagattct      4440
     ttcaattatt gttgttctat aaatgtggca ccaaattcaa atcattctct tcattttcat      4500
     agttttggta tagatattca ttcatttcaa cctaatattg atttgtcatt gcatgaagaa      4560
     ttaaaacaaa tttcaaatac tgaatattct cgttttgctc cattattttt taaacgtaaa      4620
     tttataggtc ttgatgccaa acagttttat ttttcagatg gatcatttac ccaaggtatt      4680
     gctggttttg gagtgtataa tcattattca gcatattttt tcaaactcca atcaccttgt      4740
     tcaattttcg tagctgaatt aacagcctta tattttacgt gttctttgat taaacaattt      4800
     ttacccaata tttttatcat atgttcagac agcttgagtt gtttgaatgc aattaaaact      4860
     atcaatttta attctaaaac tcatcatatc attttgaaac ttaaagaaga actattttat      4920
     ctacatactc agggatacat tattaaattt gtttgggttc cttctcattc caatatttat      4980
     ggtaatgagc aggctgattc attagctaaa ttgggtgttc gctgtggaat atggtatgat      5040
     cgtcaaattg catcatctga atattacact gaattaagaa aacattcttt aaacaattgg      5100
     cagatttctt ggaattctag tgataaagga cgttggtgtc attctatttt tcctattgtc      5160
     aatcaaacta cgtggtacaa aaaattatct gttggaagaa attttatttg tacattatca      5220
     agaataattt ctaatcatta tatttgtaat agtcacttat atcgtattga tataagtgat      5280
     tctaatttat gtgattgttg tgaaacttat gaagatattg atcatatagt tttccactgt      5340
     actcgataca ttattccaag aaataaattt gttagcgatt taaagaacca tcatgatcat      5400
     cttccttcat ctgtacgaga catattagga agtagatttc taccatcttt gaaattactt      5460
     tatagatttt tgaatgatgc ttcatattat gtttgatact tgtttctttt ttatttcaga      5520
     attggtttga agaaaatttt cccagatctg tcccgttttg atgatttcaa gtagattctg      5580
     gttcctggtc ctccttgaag attgtggctc tgctatggat caatgccgtt tgagccttta      5640
     gtttataata ttttttttat aacgatttta gaaaagataa agaggtttta tgcctttttg      5700
     agaacgattt ctttgatgat aatcactcaa aggggctttt ccctctttct aaattattta      5760
     gttaaaataa ataaataaat aaataaataa ataaa                                 5795
//
ID   I-9_AAe     repbase;    DNA;    INV; 5782 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5782
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1364-1364 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           479..1774
FT                 /product="I-9_AAe_1p"
FT                 /translation="METDGESSNSKEDDHSNLPPSVSKPFRVKIFPSTFLG
FT                 PYPVYFRKKDKPINVLLISAEVYKRFKSVKEIKKISLDKLRVVFGSRGDAN
FT                 TLLESNLFGSSYRVYAPCDSCEISGVIYDESLSCDDIKNFGLGFFKNKTIS
FT                 PVKILDCNRLSKLTFNGNSSSYTHSNCIKIIFAGSVLPDFVSINNVSFSVR
FT                 LYFPKLMHCTHCLLFGHTSSYCSNKPKCSKCGDSHSSSVCDKQSDVCIYCN
FT                 QNHFSIKDCSVYKTNQQKFNQQIKFKNRCSYSEILKASGDFSSSNIYEALS
FT                 DYDDDDLNEDSNQFIYKPPTKRKRANLLSNKHNANSDPQPSTSFDKNFPPL
FT                 NVSSTCHTIPGFQRVENDNSFNNKNRDNVDNSSNNNDNKDILNILEQIINL
FT                 LGFSDFWKNLIKKCLPFLAFIFEKLNSFGPLLSSLFSM"
FT   CDS           1777..5469
FT                 /product="I-9_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MATFNKLNILQWNCRSIIPKIDRLKALLFNHNIDIFC
FT                 LNETWLVECKHFRIPTFNIIRKDRNVSAGGVLIGVRGNIQFKYLNLPFNFA
FT                 IEYIAISVKHLGKEFSIICFYIPPNSPFSLSEIKTILDNVPSPFYILGDFN
FT                 AHNSAWGSRNSDGRGNLIMDLVDELNLNILNDGSFTRIAVPPAHHTCIDLS
FT                 LCSNSLTFLSSWKIINDPNGSDHLPILIEICNNDNKQTNNESLKPDLCRNV
FT                 NWLKFSDLISFSLTHFDYSLSPLDNYKQFCEIIIKCLIKSQKYKISPISSR
FT                 KKCPSFWWDSECSMALKNKSEAFKKFRRFGSRENYFLYCKAEAKFIRITKF
FT                 KKRNYWRNFIENLDRESSLSSLWSVARNLRNCNSSSPNIQEYSEEWINKFA
FT                 SKICPDFVPCSINFKNCQRYNYFPELSASFSLGELDLALSVTKNTSPGIDN
FT                 IKFIVLQNLPHDGKIHLLELYNSFLFQNILPLEWRSIKVVSIVKSGKDPSL
FT                 ADSRRPISLLSCLRKLMERMLLNRLELWAESNKIFSSSQYGFRKGCSTRDC
FT                 TALLASQINLSFNKKQDMVSTFLDVSGAYDSVLLDLLFEKLKNFNIPNIIA
FT                 NFLYNLFSFKIMHFFHNGSSKLIRYSYFGLPQGSCLSPFLYNLFTSDISSV
FT                 IPNGCYFYQFADDKVISISGNNREIIRHFMQCALNNIEIWANNNGFSFSVS
FT                 KTKFILFSRKRSIVNINLYLNGHEIEQVDDYKYLGIWFDSKLLWKKHIQYI
FT                 QIICAKRINFLRTITGTWWGAHPTDLITLYKTTIRSIIEYGCFTFVNASQS
FT                 HFCKLEKIQFRCLRICLKLMNSTHTQSIEVLAGVIPLKTRLHELNCKFMLN
FT                 CFMKKHPIIDVLKCLNDINPTCKILDSYKYCSSLNIVPTTISTFNYHNFDI
FT                 NVHSFHPMIDLSLYEELKQIPSDEYFRFAPLFFRRKFVGLDSHQLYFSDGS
FT                 LIQNVAGFGVYNYYSAYFFKLQSPCSVFIAELTALYFTCSLIKKCSPNIFI
FT                 ICSDSLSCLKALNSVNFNSKTHHIMLLLKKELCHLNSQGYIIKFIWVPAHS
FT                 NIYGNEQADSLAKLGVRCGSMFNRQISSSEYFADLKQYSLNNWQLSWDFSD
FT                 KGRWCHSILPNVSRFSWFKNFAVGRNFICTLSRLISNHYICNSYLYRININ
FT                 DSNLCDCGVAYEDIDHIVFHCTRFAIPRIAFFRNLKIYHRLLPQSVRDILG
FT                 SKFLPSLKILYRFLNDALYYV"
XX
SQ   Sequence 5782 BP; 1812 A; 800 C; 878 G; 2292 T; 0 other;
     tcattgctgc agtaggcctt gactaggaaa cacgtatttt ttctgcacct gacatttttc        60
     tctttttttc aggaggaaaa aaatctcgga gtacggatat tgaattggtt tcgtgtttca       120
     tggtggcgaa tgtttttgga tgcgaggaaa gcgattcaag attcgattac gttcgttgat       180
     tggtggggcg ggtttcatgg tggcgaatgt ttttggatgc gaggaaagcg attcaagatt       240
     ctgattacgt tcgatgattg gatttgaaga gagcgatcga agttttctga atcaagttca       300
     gattgtgggc tttgggaagt tttcaagctt gaggtgattt ctctcaagaa agaattcatc       360
     aagttctcta ttgaatttga taagtataat tttatttact ttcttatttt ataagtttta       420
     gttgttatta cttctcgatt gttgattatt tatttatatt ccccgttgtt ttcctaatat       480
     ggaaactgac ggggaatcgt cgaattctaa agaggatgat cattctaatc ttcctccttc       540
     agtttccaaa ccatttagag tcaaaatttt cccatctact tttcttggtc cttatcctgt       600
     ttattttaga aaaaaggata agccaattaa tgttctcttg atttctgcag aagtttataa       660
     aagatttaaa tccgttaaag aaatcaagaa aatttcgtta gataaattaa gggtagtttt       720
     tggttctcgt ggagatgcca atactctcct ggaatccaac ttatttggta gttcataccg       780
     tgtatatgcc ccttgtgact catgtgagat tagtggcgtc atttatgacg aatctttgag       840
     ttgcgatgac attaaaaatt ttggtttagg ttttttcaaa aataaaacca tttctcccgt       900
     caaaatttta gattgcaatc gtttatctaa attaacgttc aatggcaaca gttctagtta       960
     tactcattct aattgtataa aaataatatt tgccggatct gttcttccgg attttgtttc      1020
     aattaataac gtatcattta gtgtaagact ttattttcct aaacttatgc attgcactca      1080
     ttgtctttta tttggacaca cttcttccta ttgttcaaat aaacctaaat gttccaaatg      1140
     tggagattct cattcttcat ctgtttgcga taaacaatct gatgtttgta tttattgtaa      1200
     tcagaatcat ttttcaatta aagactgttc agtttataaa actaatcaac aaaaattcaa      1260
     ccaacaaatt aaatttaaaa atcgatgttc ttattcagag attttgaaag catctggtga      1320
     ttttagttct tccaatattt atgaagcatt atctgattat gatgatgatg acttgaatga      1380
     ggattctaat caatttatat ataaacctcc tactaaaaga aaaagggcta atttattatc      1440
     taacaaacat aatgcaaatt ctgatcctca accatcaaca tcttttgata aaaactttcc      1500
     tccacttaat gtttcttcca cttgccatac gattcctggg tttcaaagag tagagaatga      1560
     caattccttt aataataaaa atagggataa tgttgataat tcatccaaca ataatgataa      1620
     taaagacatt ttgaatattt tggaacaaat aataaattta ttaggattca gtgatttttg      1680
     gaaaaatttg attaaaaaat gtttaccttt tttagcgttt atttttgaaa agttaaattc      1740
     ttttggaccc ctcctttctt cattattttc aatgtaatgg ctactttcaa taaattaaat      1800
     atattacaat ggaattgtcg tagcattata cccaaaattg atagattaaa agctctgtta      1860
     tttaatcaca atatagatat attttgttta aatgaaactt ggttagtgga atgtaaacac      1920
     tttcgtatcc ctacttttaa tattattaga aaagatagaa atgtttcagc tggaggagtg      1980
     ttgattggtg ttcgtggaaa tattcaattt aaatatttga atttaccatt taattttgca      2040
     attgaatata ttgcgatatc tgttaaacat ttgggtaagg aattttctat catatgtttt      2100
     tatattcctc caaattctcc tttttcatta tcagaaataa agactatatt agacaatgta      2160
     ccttctccat tttacatatt aggagatttt aatgcccata attctgcttg gggtagtagg      2220
     aatagtgatg gtagaggtaa cttgatcatg gatttggttg atgaattgaa tttgaatatt      2280
     ctcaatgatg gatcatttac cagaattgct gttcctcctg ctcatcatac ttgtattgat      2340
     ttatctcttt gttctaatag tttaacattc ctttcttctt ggaaaataat taatgatcct      2400
     aatggtagtg atcatttacc tattttgatc gaaatttgta ataatgacaa taaacaaaca      2460
     aataatgaat ctcttaagcc tgatttatgt agaaatgtta attggttaaa attttcggat      2520
     cttatttcat tttcgttaac tcattttgat tattcattat ctccactcga taattataaa      2580
     caattttgcg agattataat taaatgttta ataaaatctc aaaaatacaa aatatctcca      2640
     atttcttcta gaaaaaaatg tccttcattt tggtgggata gtgaatgttc tatggcttta      2700
     aaaaataaat ctgaagcctt taaaaaattt cgtcgttttg gatcaaggga aaattatttt      2760
     ttatattgta aagctgaagc taaatttatt cgaattacta aatttaaaaa aaggaattat      2820
     tggagaaatt ttatagaaaa tcttgataga gaatcttctc tatcttctct ttggtctgtt      2880
     gctagaaatt taagaaattg taattcttct tctccaaata ttcaggaata ttctgaagaa      2940
     tggattaata aatttgcctc taaaatttgt cctgattttg ttccatgttc cataaatttt      3000
     aaaaattgtc agagatataa ttattttcct gaacttagtg cttcattttc attaggagaa      3060
     ttagatttag cattatctgt tacaaaaaac acatcaccgg gaattgataa tattaaattt      3120
     attgttttgc aaaatttacc acatgatgga aaaatacatt tgttagagtt gtacaattca      3180
     ttcctttttc aaaatattct acctttggaa tggcgttcta ttaaggttgt cagtattgta      3240
     aaatcaggca aggatccttc attagctgat agtcgtagac caataagttt attgtcatgt      3300
     cttcgtaagc ttatggaaag aatgttactt aatcgtttag aattatgggc tgaaagtaat      3360
     aaaatttttt cttcttccca atatggtttc agaaaaggtt gtagcactcg tgattgcact      3420
     gctcttctag cttcacaaat taatctttcg tttaataaga agcaggatat ggtttcaact      3480
     tttcttgatg tttctggggc ttatgattcc gtgttattag atctactttt tgaaaaatta      3540
     aaaaatttca atattccaaa tataattgcc aattttttat ataatttatt ttctttcaaa      3600
     attatgcatt tttttcataa tggctcttcc aaattgatac gatatagtta ttttggtctt      3660
     cctcaagggt cttgtttgag tccatttcta tataatttat ttaccagtga catatcatct      3720
     gttattccaa atggatgtta tttttatcaa tttgccgatg ataaagttat ttctatcagc      3780
     ggtaataata gagaaattat tcgtcatttt atgcaatgtg cattaaacaa tattgaaatt      3840
     tgggcaaaca ataatggttt ttctttttct gtttctaaaa ctaaatttat tttattttct      3900
     cgtaaacgtt ctattgttaa tataaattta tatcttaatg gtcacgaaat tgaacaagtt      3960
     gatgattata aatatctagg aatatggttt gattcaaaat tattgtggaa aaaacatatt      4020
     caatatatcc agataatttg tgcaaaaaga ataaatttcc ttagaactat aacaggtact      4080
     tggtgggggg ctcatcctac tgatttaatt acactttaca aaacgaccat tagatctatt      4140
     attgaatatg gatgttttac ttttgtaaat gcaagtcaat cgcatttttg taagctagaa      4200
     aagattcaat ttcggtgtct aagaatttgt ttaaaattaa tgaattcaac tcacactcaa      4260
     tctattgagg ttttagctgg agtgattcca cttaaaactc gcttacatga attaaattgt      4320
     aaattcatgt tgaattgttt tatgaaaaaa cacccaataa ttgatgtttt gaaatgttta      4380
     aatgatataa atccaacttg caaaatttta gattcataca aatattgttc ttctttgaat      4440
     attgttccta caacaatttc tacattcaat tatcataatt ttgatattaa tgttcactcg      4500
     ttccatccaa tgatcgattt atcgttatat gaagaattaa aacaaattcc tagtgatgag      4560
     tattttcgct tcgctccttt attttttcgg cgtaaatttg ttggattaga ttcacatcaa      4620
     ctttactttt ctgatggatc attaatccaa aatgttgctg gttttggagt ttataattat      4680
     tattctgctt attttttcaa attacaatct ccttgctcag ttttcatagc tgaactaact      4740
     gccttgtatt ttacttgttc tttgattaaa aaatgttctc caaatatttt tattatatgt      4800
     tcagacagtt taagttgttt gaaagcactc aattccgtta atttcaattc taaaactcat      4860
     cacattatgt tgttgctgaa aaaagaatta tgtcatttga attctcaggg ttacattatt      4920
     aaatttattt gggttcctgc tcattctaat atttatggta atgagcaagc tgattcttta      4980
     gcaaaattag gggttcgttg tggcagtatg ttcaacagac aaatttcttc gtctgaatat      5040
     tttgcagatt taaaacaata ttctttaaat aattggcagc tttcatggga ctttagtgat      5100
     aaaggacgat ggtgtcattc aattttacct aatgttagtc gatttagttg gtttaaaaat      5160
     tttgctgtcg gaagaaattt tatttgtaca ttgtcgaggc ttatatccaa tcattatatt      5220
     tgtaatagtt atttatatcg tatcaatatc aatgattcta atttgtgtga ttgtggtgtt      5280
     gcttatgagg atattgacca tattgttttt cattgtacgc gttttgctat acctagaatt      5340
     gctttcttta gaaatttgaa aatatatcat cgtttgctcc ctcaatctgt tcgtgatatt      5400
     ctgggaagta aattcttacc ctcgttaaaa atactttata gatttttaaa tgatgctttg      5460
     tattacgtat gattctgctt ctttcttttt tttctttttt caggtttgat ggaaacattt      5520
     tcaacaaact catttaagga tggcatcaag tagttttcga gtcatggccc ttttttcaag      5580
     atttttggct ccgtaatgga taaatgccgc ctgagcctat agatttatat tttattatta      5640
     ttaccatttt gtaatgttat tttgaaaaga taaagaggtt ttgtgccttt ttgagaagaa      5700
     tttcaaaagg aaatcactca aaggggcttt tccctctttc aaaattttta gttaaaaaat      5760
     aaataaataa ataaataaat aa                                               5782
//
ID   I-9_DTa     repbase;    DNA;    INV; 5302 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5302
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence,.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1158
FT                 /product="I-9_DTa_1p"
FT                 /translation="MRDPPDIWRGKPSPTSKFLVVTRINDEETQSEVPPTL
FT                 AGVSPFTIKKIIDLTCGGEVVSCKKTRDGNLLVQTKDQQQAEKLIKLTNIP
FT                 NNIPVAVSEHRTMNYSKGVIHSNDLRGIKEEEILDNLKSQKVSEVKKIMKT
FT                 VYGSDPTETGLIILTFARLDLPEYVYIGYERVEIRPYIPSPMRCNSCLRLG
FT                 HLQNSCKVSENCYRCSQTNHIDLAKGEKCERAASCINCTDTKTYLTPTTIP
FT                 EIESVQYFSRTKKYKPSKPFKKLTTKRPGTSSKPDIITTAPYTHRLPTPLI
FT                 KDIPDLNSLAKTHHPLQLQPLTTHHQQLTQAET"
FT   CDS           join(1190..1366,1373..1813,1817..2284,2227..2781,
FT                 2891..3505,3496..3969,3973..5115)
FT                 /product="I-9_DTa_2p"
FT                 /translation="MSTDPGEEPTINGKANKINILPRNIRNKTKRHFINKD
FT                 KSTTMLIRPMIKNITSSNATNNRNLTNTPYPIILNMALTVLQWNINGYLNN
FT                 YNELLILLKLHQPNIISLQETHITLFQKFPIPVNFKMYNTISATAKGGVAL
FT                 LIHKSVQHKPITAGQVFETIGLEIQAQKKLNIFSAYIPPSQRFTKTDLETT
FT                 IPHLTTPTLITGDFNGNTLWGSPKSNRRGRILGDYIHSNSFITLNNGQPTY
FT                 FSTHNSYTHSDIAFCSPSLKIHCDFKIMDSPQGSDHFPIIITIFAQENQTL
FT                 NYTKRFITKKANWEKFESLSSQFKNQIPLSTNTNTEHSNINKIILNSAYNS
FT                 IPNPFPQKLNTTSLGGTKNYPQSLPPKTQYNIPWWNKKLKNLKLNKNRAWR
FT                 AFNRKMSLPNLINFKKSNAQLRREIRNSKKESIHALTSSISTDSKPEMIWN
FT                 KIRQFCGIHKSTHIHCIQVNTTNTMVSKPEDIASAFAKHWSSQSEDQNFSQ
FT                 AFLEAKHNTYRQNNDEPPKETADFMERDIDYLEFSVALNSHSQAYYLYAWE
FT                 ISTIVPIHKPGKDKTTIGSYRPISLTPCISKTLDKIISKRLWWFVTSNKLL
FT                 NSRQIGFKKGKSVKDCLLYVDALINKALSEKRHASIISLDFEKAFEKVGLH
FT                 TIKSQLIKWGCGPRLLKYVTQFMTSRKIRVKVNHSHSLIQQLHNGIPQGSP
FT                 LSVILFLIAFNSLSDIISKHKKLNFTAFADDYNIIVDLKKSEKPIYRPKRS
FT                 FTIFLRTSTTGVICLERRYRSPNAKHMHICRKHNCHSHLFSQTNSICTVPE
FT                 LTMLGLSFDSKYKWKPDINKLAKSLTNFVNIIKCLSNDKYNTQPLTLVEIV
FT                 KSICLSKIDYGLPLYGIAPKSQIKPIQTLLNNALRSALGAFCSTPVINMYL
FT                 ESNIAPDIRTHHLQAKLSNTIMKSTDTPLKSIIDKITKKNTRKYRNSALHK
FT                 SIMSCVNLNIPVSPIKILPKSKPPWHLKPDAIDLHLSKYNKGTTSMSILRK
FT                 EFLDIKAKLTNYTLIYTDGSQNQDTTAYAITTENNILKRAILPNYTSIYTA
FT                 EIIAILEAVEIGRLIKGKICICSNSLSAIHSIQHIENSAYYPSKIRGIINN
FT                 AYPKFKIMWVPSHVGISGNEFADESAKNATIAPLITSHNLNQSDINRFLKK
FT                 HFYNTSLNLIQHSSTWYQLINNSHTNLKDYTTAKEITKLSRKDQIRIIRLR
FT                 LGHTRLTHEYRFSQPTSNPCKFCNQNSMTIEHILNECTAFDNYRASIPNKN
FT                 LIPLLSNPTTTNLLQLLDFLNKSNISSSYN"
XX
SQ   Sequence 5302 BP; 2019 A; 1274 C; 724 G; 1285 T; 0 other;
     cagtttacgt ttggcagtca aagcgatcgg tcgtgttttc tcccaaatcg aacttaacag        60
     cgtgtcaagc ttaagtgaca aacaaacatt cgaacgcagc tataattaga tccccgttat       120
     cagttgattc taccgttgtc tcgtgcattc gcccaccaaa gcaactcaaa agcgctgcta       180
     gcaatgcggg atcctccaga tatctggagg ggaaagcctt cacctaccag taaattcttg       240
     gtcgtaacca gaattaatga tgaagaaacc caatccgaag tcccaccaac cctagcaggt       300
     gtttcaccat tcactattaa aaaaatcatc gatcttacat gtggaggtga agtagtgagc       360
     tgcaagaaaa cacgcgatgg aaatctcctc gttcaaacaa aagatcaaca acaagccgag       420
     aaattaatta aacttaccaa catccctaac aacataccag tagcagtatc cgaacatcgt       480
     acgatgaatt actcaaaggg agtaatacat tcaaacgatc ttcgaggtat aaaagaagaa       540
     gaaatcctag acaatttaaa gtcccaaaaa gtctccgaag tcaaaaaaat tatgaagaca       600
     gtatatggca gcgacccaac cgagactgga cttatcattc taactttcgc cagactagat       660
     ttgcccgaat acgtttatat tggatacgag agagtcgaaa ttcgccctta tattccttcc       720
     ccaatgcgat gcaatagctg cctacgattg ggacatctac aaaattcctg caaagtttca       780
     gagaactgct ataggtgtag ccaaaccaac cacatcgacc tggctaaagg tgaaaaatgt       840
     gagcgtgccg caagctgcat aaattgcact gacacaaaaa cttacctaac tccgaccacc       900
     attccagaga tagaaagtgt ccagtatttc tcacgcacaa agaagtacaa gccatcaaaa       960
     cccttcaaaa agttgactac aaaacggcct ggaacatcct caaaaccaga catcatcacg      1020
     acggctcctt atacgcatcg gttgccaacg cctctaatca aagatattcc cgacctcaac      1080
     agcttagcca aaacacacca tccacttcag cttcaacctc ttacaacaca tcaccaacaa      1140
     cttacacagg cagaaacata attacttacg acgacaagga agacgaacaa tgtcgacaga      1200
     ccctggagaa gaacctacta tcaacggtaa agcaaacaaa atcaacatcc tgccaagaaa      1260
     cataagaaac aaaactaaaa gacattttat taataaggat aaatcgacca ctatgttaat      1320
     tagacctatg attaaaaata tcactagctc aaacgcaaca aacaattaat agcgaaacct      1380
     aacgaacact ccatacccta taatattaaa tatggcactt actgtattac aatggaatat      1440
     taatggctat ttaaataatt ataatgaact actaatcctc ttaaaacttc accaacccaa      1500
     catcatttca ctacaagaaa ctcacattac actctttcaa aaatttccta tccccgttaa      1560
     cttcaaaatg tataacacaa tttcggctac agctaaaggg ggtgttgctt tactgatcca      1620
     caaatcagtg cagcacaaac caatcactgc aggccaagtt ttcgaaacta ttggactaga      1680
     aatacaggcc caaaaaaagc ttaatatttt ttcagcctat ataccacctt cacaaagatt      1740
     tactaagaca gatttagaaa ccacaatccc ccacctaaca acacctacac tgatcacagg      1800
     agatttcaat ggatgaaata ctctctgggg atcccccaaa agcaaccgca ggggtagaat      1860
     cctaggagac tacatccaca gtaatagctt tatcacatta aacaacggtc agccaacata      1920
     tttctcaact cacaactcat acacccacag cgacatcgcc ttttgctcgc caagcctcaa      1980
     aattcactgt gacttcaaaa taatggactc tccccagggt agcgatcact ttccaattat      2040
     aataaccata tttgcccaag aaaatcagac attaaactac acaaaaagat ttattactaa      2100
     aaaagcaaac tgggaaaaat ttgaaagtct ctccagccaa tttaagaacc aaattccatt      2160
     atcaactaac acaaacacag aacacagcaa cataaataaa ataatattaa atagcgccta      2220
     taatagtatc cccaatccct tcccccaaaa actcaataca acatcccttg gtggaacaaa      2280
     aaactaaaaa acttaaaatt aaacaaaaac cgagcctgga gagcgtttaa taggaaaatg      2340
     tccctgccta acctaataaa ttttaaaaaa tcaaatgcgc agctcagacg agaaattcga      2400
     aatagcaaaa aagaaagtat tcacgcacta acatccagca tttcaacgga ctcaaaacca      2460
     gaaatgatct ggaataaaat aagacaattc tgtgggattc acaaatcaac acacatacat      2520
     tgtatccagg tcaacactac taacacaatg gtatcaaaac cagaagatat tgcttcagct      2580
     tttgccaaac attggtcatc tcaatccgaa gatcaaaact tctctcaagc atttctagaa      2640
     gcaaagcaca acacatacag acaaaacaac gatgaaccac caaaagaaac agcagacttc      2700
     atggaacgag acattgacta tcttgaattt tctgtagctt taaacagtca ttcccaggcg      2760
     tattacctat acgcctggga atgacaaaat caattataca atgattcaga aatctgccaa      2820
     aacagttaaa cttagaataa taaacttctt caactcaatc ctaaattcat ttatccctca      2880
     ggccttttaa attagtacaa tagtcccaat tcataaacct ggcaaagata aaacaactat      2940
     tggatcatac agacctatct cccttacccc ttgcatctca aaaacgcttg acaaaatcat      3000
     ctccaaacga ctctggtggt ttgttacttc caacaaactt ctgaacagtc gtcaaattgg      3060
     gttcaaaaag ggaaaatctg tgaaagactg tctattatat gtagatgctc tgatcaacaa      3120
     ggccctttca gaaaaaagac acgcctcaat catatctctt gactttgaaa aagcgttcga      3180
     aaaagtaggt ttacacacga ttaaaagtca attgataaaa tggggctgtg ggccaagatt      3240
     actcaaatac gtaacccagt ttatgacaag tcgaaaaatc agagttaaag tcaaccacag      3300
     ccattctcta atacaacaac tccacaacgg gatcccgcaa ggatcccctc tatctgttat      3360
     tcttttcctc atcgcattta acagcctatc agacataata agcaaacaca aaaaacttaa      3420
     cttcacagca tttgcagatg actacaacat tatagttgac cttaaaaaat cagaaaaacc      3480
     aatctataga cctaaacgat ctttttgagg acatcaacaa ctggagtaat ttgtctggag      3540
     cgtcgctatc gctctccaaa tgcaaaacat atgcacattt gcagaaagca caactgtcac      3600
     tctcatcttt tttcacaaac aaactcgata tgcacagtac cggaactaac gatgttaggc      3660
     ttatccttcg actcaaaata caaatggaaa cccgatataa acaagttagc aaaatcccta      3720
     actaatttcg tcaatataat taaatgcctc tcaaacgata aatataacac tcaaccactg      3780
     accttagttg aaattgtcaa aagcatttgc ctgtcaaaaa tagactacgg cttaccatta      3840
     tatggtattg caccgaaatc tcaaataaaa ccaatccaaa cccttcttaa caatgcactc      3900
     cgttcagcac taggagcctt ctgctcaaca cccgttataa acatgtatct agaatctaac      3960
     atagcaccct aagacattag aactcatcac cttcaagcaa aactctctaa cactataatg      4020
     aaatcgacag atactccttt aaaatcaata atagacaaaa tcactaaaaa gaatacgcga      4080
     aaatacagaa actcagcact acacaaaagc atcatgtcct gtgttaacct taacatcccc      4140
     gttagcccaa taaaaatctt accgaaatcg aaaccgcctt ggcatttaaa acctgacgca      4200
     atagatttac atctgagtaa atacaataaa ggaacaacga gcatgtcaat attaaggaaa      4260
     gaattcttgg acataaaagc aaaactgaca aattacacac ttatttacac ggacggatca      4320
     caaaaccaag acactactgc atacgccata accacagaga acaatattct aaaaagagcc      4380
     attctaccaa actacacctc aatttacacc gcagaaatta tcgccatact cgaagcagtt      4440
     gagataggtc gtttgattaa aggaaaaatt tgcatctgct cgaactctct atccgcaatc      4500
     cactcgattc aacacatcga aaattccgct tattatccat cgaaaattcg tggtataata      4560
     aataacgcat acccaaaatt caaaatcatg tgggttccga gccacgttgg aattagtggc      4620
     aacgaatttg ctgatgaatc cgcaaaaaac gcaactatcg cacctctgat aacctcgcat      4680
     aatttaaacc agtccgatat aaacagattt ttaaaaaaac atttctacaa tacctccctt      4740
     aatcttattc aacactcttc cacctggtac caattaatta acaatagcca tacaaattta      4800
     aaagactaca caacagcaaa agagataacc aaactatcta gaaaagacca aatccgcata      4860
     attagactac gtctgggtca caccagactc acccatgaat atagattttc ccaaccaaca      4920
     agcaacccct gtaaattctg taaccaaaat tcaatgacaa tagagcatat tctaaacgaa      4980
     tgcactgcat tcgacaacta cagagccagc atcccaaata aaaacttaat cccactcctt      5040
     tccaatccca cgaccactaa cctccttcaa cttctagact tccttaacaa atctaacata      5100
     tctagctctt ataattaaga tatcttcata acctgaaatg taactgaact agacacttag      5160
     taattaagaa tcgaacacaa aaatgaattt attaacttta agcaggccta aagccttagt      5220
     agctatagct gcccattttc tgtagcttta gttttttaac tttaagcaaa cagagtgtaa      5280
     aataaataat tttaattaat ta                                               5302
//
ID   I-9_LMi     repbase;    DNA;    INV; 4184 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4184
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3142-3142 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(241..732,657..896,900..1304,1276..1560,
FT                 2101..3642,3585..3950)
FT                 /product="I-9_LMi_1p"
FT                 /translation="QLLTSSSQQYEWLFHLTVLYYGMHAPFGAIKIVYFRL
FT                 CTNNIAXCAITETWLAPQNDIYISGFNIVRGDREDGYEGTALLIKHGIPFK
FT                 ALNLGHRAEFQYAGVTILLNTGNIDIIAVYRAPQNVITKDQLRSLVNSSTN
FT                 LKLIMGDLMHTILPGTQVEKIDVEDPEVNNGGLNAHHPAWDPGREDRCGRL
FT                 IADVVDESNLIIRNDGRPTIISRPGQRSGAVDLCFASPFLATTLTWELAED
FT                 SLGNHLPTILRCVPQSPNRSLIHNNYHWNTCKADWSKYRTVIAPIMNSFEV
FT                 LGNPVSDYINFRKNIEEAAKMSVPQNKPFVPRQKKQPDWWDEECSNAVRER
FT                 TTALKLYERQTTVENYINFNRVQVKVKTTSQGKEKKKRLLKEKKRNNWKEF
FT                 CGSLNAKTPISSVWNKFKRMRRVHIQSPSPMSFPIGQMEGFLKRLTDDSVD
FT                 LEVNCWRRIPFHGRSHYSKRIKSSVDSSKPRRTNKGIPQGSALSPTLFNIH
FT                 AADMHTILDSGITILLQYADDLCVYTTSDSLGEGQWKMDAVMTAVGYWLEE
FT                 NDLFISQTKSAVSIYTRHRMQEIPSLTLGAYVLPVKPVVKYLGLHIDSKLR
FT                 WTVHINQIVAKCEKNINVLRAVAGVTWGADCYTCMNVYRAIVRSRLDYGSI
FT                 FYGSATDTLLQKLNTVQYKALRVCLGAMKSTPTNALLVESNEPPLHLRRKY
FT                 LSIKFLMKRAQFSEDVLLSRIQELSVICYTAHYWLCKNLPPLAREYLEVAQ
FT                 NIRLAISNRRLLMFERSYLCTVVEPDVTCDLPASSTLANYALLEFRDKYSQ
FT                 ARILYTDGSKTQDGSGCAFWDTNAQTGCKYKLPKEMTIMTAELTAILEALK
FT                 YCLTVPEEHIVIFSDSKSALILLKYFRRGHKNHPIAYEIMAHINHLERNGR
FT                 SVSMCWIKAHNNVLGNEIADTLAKEAVTTGTEEYTQVPAEDLLPVYRRKIR
FT                 TEWDKEWQASQSTKGKYYAQITPVLPTRPWYKDREILCTNNTSATNQTLVQ
FT                 GLRCSRKLAVTIARLKFNHCRTAQHLHRIGIVTSPLCDCGEAEDTNHIFFF
FT                 GCMNRWELTSKLLSYIVSRDYQLPISVSTLLATKDFGVYKELISFLTAAKK
FT                 EL"
XX
SQ   Sequence 4184 BP; 1346 A; 899 C; 887 G; 1049 T; 3 other;
     acaagccgac ctgcctatat ggcagagtgg ttccaatgac gactgcaatt tcgcccatac        60
     caacccatat ccccacagta catcaaacag cacacccgag caacaccaaa agtatctggt       120
     gaatagcata ctgcacatta taatgactgt ctgggaagta tgtcaagcac agcacacgta       180
     aacactgatg caaagtaata acctgaaagc gctatcataa catgctcgct cacgtcctaa       240
     cagcttctga caagtagttc acaacagtac gaatggctgt ttcatcttac agtattatac       300
     tatggaatgc acgctccatt cggagcaatm aaaatagttt actttcgttt gtgcacgaac       360
     aacatagctw tctgcgctat aacagagacg tggttagctc cacagaatga catctacata       420
     tccggtttta acattgtgcg aggtgataga gaggatggat atgaaggaac agcactgtta       480
     ataaaacatg gaatcccatt taaagcatta aatttagggc atcgtgcaga atttcaatat       540
     gcgggtgtca ccattctctt gaacactggc aatattgaca taattgctgt gtatagggca       600
     ccacagaatg ttataactaa agatcagctg cgaagtcttg taaattccag tactaacctg       660
     aagttaataa tgggggactt aatgcacacc atcctgcctg ggacccaggt cgagaagata       720
     gatgtggaag attaattgca gatgtcgtcg acgaaagtaa cctcataata cgcaacgacg       780
     gaagaccgac aataatcagt cgtccaggcc aacgaagcgg tgcagtcgat ctttgttttg       840
     cgtctccatt cctggctaca acgcttacat gggagttggc ggaagattca ttaggctaaa       900
     accatttacc aaccatactc cgatgtgtcc cgcaaagtcc taacagatca cttatacata       960
     acaattatca ttggaacaca tgtaaggcag attggagtaa atacagaacg gtaatagcac      1020
     ccataatgaa cagcttcgaa gttctcggaa acccagtgtc ggattacata aatttcagaa      1080
     aaaatattga ggaagcagcg aagatgtctg ttccccagaa caaaccgttt gttcccagac      1140
     aaaagaaaca gccagattgg tgggacgaag aatgtagcaa cgcggtgaga gaacgtacga      1200
     ccgcactgaa attgtacgaa cgtcaaacta cagtagaaaa ttatattaat ttcaatagag      1260
     tgcaggtaaa agtgaaaacg acttctcaag gaaaagaaaa gaaataactg gaaggaattt      1320
     tgcgggagct taaatgcaaa gacaccgata tcgtcagtgt ggaacaaatt taaacgtatg      1380
     agaagggttc acatccagtc gcccagcccc atgtcttttc ctattggtca gatggaaggt      1440
     tttctaaaac gtcttacaga cgactctgtt gaccttgagg ttaactgctg gagacgtata      1500
     ccttttcatg gacgaagcca ttacagcaaa cgaattaaat cgagcgttga cagttcaaaa      1560
     tagcacggct cctggtcctg acaacatcgt ttaccccatg ctatataatt tgacggaaca      1620
     agggaaaacg catctatgac atattctaag cagttcttgg tcaagtagaa gctactcggc      1680
     tgaaatgaaa acagcgcgag ttgtcccaat cttgaagcct ggaaaacctc cggatgaact      1740
     gtcctcatat agacctactg tacagccacg ttccatcaga gtgctagaaa gaataataaa      1800
     acataggata gaatggtggt acgagcataa cgacctgttc tagaatagac gcgatttcga      1860
     agaagcagtc gcacttatga aacactagca cgacacatta cagatctcca aatttgtctc      1920
     aacaacaagt acctaatagt agtttatacg gatattgaga atgcttatga cgctgttgac      1980
     ctatggttac tagacagaaa gatggtgaaa cacgatatac ctccttaatt tattagcaac      2040
     cttatttctc tactcaagga cagagaactt tgtatgaaag ttggggacaa cagcgtgtga      2100
     ccaaggagga caaataaggg tatcccacaa ggatcagctc tctcaccgac gctgtttaat      2160
     attcacgccg cagacatgca caccattctt gacagcggta tcaccatatt actacaatac      2220
     gctgatgatt tgtgtgtata tacaacaagc gacagtctag gtgaaggaca gtggaaaatg      2280
     gatgcagtaa tgacagctgt cggctactgg ctagaggaaa atgacctgtt tatttcacag      2340
     accaagtctg cggtgagcat ctacaccaga catcggatgc aagaaatccc atccctaacg      2400
     ttaggagcat acgttcttcc ggtgaaacca gtggtgaaat atcttggcct acacattgac      2460
     agtaaactac gatggacagt acatataaat caaatagtag caaaatgtga gaaaaacatt      2520
     aacgttttac gagcagtggc aggcgtaacg tggggtgcgg actgctacac atgtatgaac      2580
     gtgtatcgtg ccatagtgcg gtcgcggttg gactacggaa gtatattcta cggatcggca      2640
     acagacaccc tcctacaaaa acttaatacc gtacaataca aagcgctcag agtgtgtctt      2700
     ggtgccatga agtcaacccc aactaatgct ttacttgtgg aaagtaatga accacctcta      2760
     cacttacgac gcaaatattt aagcataaaa tttctaatga agagggcaca attttcagaa      2820
     gacgtcttat tatctcgcat acaggaactt tctgtcatat gttacactgc tcattattgg      2880
     ctatgtaaga acctgcctcc acttgcaagg gaatatctag aggtagcgca gaacatccga      2940
     ttagccatct caaatcggcg actgctcatg tttgaacgaa gctacttatg tactgttgtt      3000
     gaacctgacg tgacatgtga tctcccagct tcctcgactc tggcaaatta cgcattacta      3060
     gagttccgag acaaatattc acaggcgagg attctttaca cagacggctc caaaacccag      3120
     gacggatcgg gatgcgcctt ttgggatacc aatgcgcaaa caggatgtaa atacaaactg      3180
     ccaaaggaaa tgacaataat gaccgctgaa ctcacagcca tcttggaagc tctcaagtac      3240
     tgccttacgg ttccggagga gcatattgtc atcttctcgg actctaaatc tgcgctcata      3300
     cttcttaaat attttcgtcg agggcataaa aaccacccaa tagcctacga gataatggca      3360
     cacataaacc acctggaaag gaatggacgc agtgtttcca tgtgttggat taaagcacac      3420
     aacaacgttc tggggaacga gatcgctgac acacttgcca aggaagcggt taccactggt      3480
     acggaagaat atactcaggt tccagcggaa gatcttttac cwgtttacag aaggaaaatt      3540
     cggactgaat gggacaaaga atggcaagct tcccagtcaa ctaaagggaa atactatgca      3600
     caaataacac cagtgctacc aaccagacct tggtacaagg actgaggtgt tctcggaagc      3660
     tggcagtcac catagcgagg ctgaagttca accactgtcg aactgcgcag cacctacatc      3720
     gcatcggcat agtgacatct ccactttgtg actgcggcga agcagaagac acaaatcaca      3780
     tttttttttt tggatgcatg aacaggtggg agctcacatc aaagttgcta agttatattg      3840
     tgagcaggga ctaccagtta ccaatatctg tatcaacatt attggcaacc aaagactttg      3900
     gagtgtacaa agaacttatc tcctttctaa cggcggcgaa gaaagagtta tgaactgtta      3960
     tgtaaaagat aaaaccatgt ttaatcacta tattgtgtca tatctttaat gtttgttatg      4020
     ttacttcaaa ttgatctttc tgtttttgtt ttctgtcaca tctttgatgt ttgtatagtt      4080
     gcttttgcca acttgcttac ataactgtac cagaggatgt ccttatcatt acttatgtgg      4140
     atggctgtaa ggggactact caaaggccaa taaaaaaaat aaaa                       4184
//
ID   I-N1_CQ     repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A non-autonomous I non-LTR retrotransposon from Culex
DE   quinquefasciatus - consensus.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   I-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1589
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous I non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 583-583 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity. ~5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..1471
FT                 /product="I-N1_CQ_1p"
FT                 /translation="MAAAAKADSDWTVHKTKDGKPFYWNKVTQESVWKKPD
FT                 GFQEEKQPLTDKEVEKPDPPTPRVRKYQDAPGERWQVFFRPKHKPLQTMRI
FT                 SEELWKHYPGVTDVTKLHQNKLRATVNNPKEANAIVCDPRFCIEYRVWIPA
FT                 RSVEIDGVVSENGLTVQQVLTAVGHFKRRNLPTIPVIEARQMGTAEGEGAS
FT                 KRFVPSSSYRVTFAGTALPDYLVVDNMLRLPVRMYRPRVMSCSNCKKLGHT
FT                 KAFCSNKTVCGKCGEKHPDEQCQKEVEKCLLCGGQPHEVRSCPKYKTREDK
FT                 LKRELERRSKRSFADMLKTVTTSAGSENPFSVLSEEEDDSSEDGTEDELII
FT                 NAKGGTSKRKRKTKKKSNSDKSRSSTLPQPGSEKFNKAFPGVSSTKTSPKD
FT                 PTNPAAVVPQKDHGKDNRIPFSLLLEAVLSAVSGSTRTLLEPLIPFFKELG
FT                 KILSENSALNAIISFD"
XX
SQ   Sequence 1589 BP; 443 A; 392 C; 446 G; 308 T; 0 other;
     tctctcgtca gctcttgcag tgagcggtcg tctttcgagt ttttagcgcg tgtttctgac        60
     ggtgttttgt ttaccttcgc cgacggccat ggcggcggcc gcgaaggcgg atagtgattg       120
     gacggtccac aaaaccaagg acggcaagcc gttttactgg aacaaagtta cgcaggagag       180
     tgtgtggaag aaaccggacg ggtttcagga ggagaagcag ccgttgacgg acaaggaggt       240
     ggagaaaccg gatccaccaa ccccgcgcgt gcgtaagtac caggacgctc ccggggagag       300
     gtggcaggtt ttctttcggc cgaagcacaa gccactgcag acaatgcgga tttcggagga       360
     actgtggaaa cactaccccg gagtgacgga tgtcaccaaa ctccaccaga acaagctccg       420
     cgctactgtc aacaacccga aggaagccaa cgcaatcgtc tgcgatccgc ggttctgcat       480
     tgaataccgg gtctggattc cggcgcgttc cgtggagatc gacggcgtgg tgagcgaaaa       540
     tggactgacg gtgcagcagg tgttgacggc ggtaggccac ttcaagagga ggaacttacc       600
     aacaattccg gtcatcgagg ctcgacagat gggtacggcc gaaggtgagg gcgcgtccaa       660
     acgctttgtc ccatcgagct cgtaccgagt gacgtttgcg gggacagctc taccagacta       720
     cctggtggtg gacaacatgc tccgccttcc ggtgcgcatg taccgcccgc gcgttatgag       780
     ttgctctaac tgcaaaaagc tgggacatac aaaggcgttc tgcagcaaca agacggtctg       840
     tggcaaatgc ggagagaaac atccggacga gcagtgccag aaagaggtag agaagtgcct       900
     gctctgtgga ggacaacccc acgaagttcg ttcttgtccc aaatacaaga cgcgcgagga       960
     caagttgaaa cgcgaactgg agaggcggtc gaagcgctca ttcgcagata tgttgaagac      1020
     ggtcacgacg agtgccggca gcgagaaccc cttttccgtc ctttcagagg aagaggatga      1080
     ttcatctgag gacggaactg aagatgagct gataatcaac gcaaaaggcg gaacctccaa      1140
     aaggaagaga aaaacaaaga aaaagagcaa cagtgacaag tctcggagca gcacccttcc      1200
     acagccaggt tcggaaaagt tcaacaaagc gttcccgggg gtgagctcaa caaaaacatc      1260
     gccaaaagat ccaaccaacc cagcagcagt cgtgcctcag aaggaccatg gtaaagacaa      1320
     ccgaattccg ttttcgcttt tgttggaagc ggtgttgtcg gcagtgagcg gatctacaag      1380
     aaccctgctg gaacctctga tccccttctt caaagaactc ggcaagatac tcagcgagaa      1440
     ctcggcgctt aatgccatta tctcttttga ttaaactgtt aatttactat agccttaagt      1500
     taaaatgtaa attacaagta aaacccggtc cgaaccagtt tacgtacagc taaggggacc      1560
     taaataaaca atttcatgaa taaaaaaaa                                        1589
//
ID   IC-Clho     repbase;    DNA;    INV; 1221 BP.
XX
AC   .
XX
DT   20-APR-2020 (Rel. 25.05, Created)
DT   20-APR-2020 (Rel. 25.05, Last updated, Version 1)
XX
DE   Incomer family of Mariner DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Incomer;
KW   IC-Clho.
XX
OS   Clitarchus hookeri
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Phasmatodea; Verophasmatodea;
OC   Anareolatae; Phasmatidae; Phasmatinae; Acanthoxylini; Clitarchus.
XX
RN   [1]
RP   1-1221
RA   Sang Y., Gao B., Diaby M., Zong W., Chen C., Shen D., Wang S.,
RA   Wang Y., Ivics Z. and Song C.;
RT   "Incomer, a DD36E family of Tc1/mariner transposons newly
RT   discovered in animals.";
RL   Mob DNA 10, 45-45 (2019).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           148..1185
FT                 /product="IC-Clho_1p"
FT                 /translation="MAARRELTDFERGMVVGARRMGHSISEMVREFNIPRS
FT                 TVSRVCREYLISGITSHHGQRSGRPPALNDRDQRRVRRMVSVNRQATLREI
FT                 TAGINVGRTTDVSVRTVRRTLAVLGYASRRPTRVPLLTARHRLQRLSWARD
FT                 HIGWTLDDWKTVAWSDESRFQLVRADGRVRVWRRPHESMDPSCQQGTVQAG
FT                 GGSIMVWAVFTWNGLGPLVQLNRSLTGKGYVQLLGDHLQPFMDFMYPNNDG
FT                 IFMDDNAPCHRATTVRDWFEEHSGQFQRMIWPPRSPDMNPIEHLWDIIEKS
FT                 VRAQTPAPATLSQLWTSIEAAWLNISAGDFQRLVESMPRRVAALRRAKGGP
FT                 TRY"
XX
SQ   Sequence 1221 BP; 325 A; 281 C; 326 G; 289 T; 0 other;
     tacagaggtg acaaaagtca tgggatagca atatgcaaat atacagatgg cagtagtatc        60
     gcgtacaaaa tgtataaatg ggcagtgcat tggttgggct ttcatttgta gtcaagtgat       120
     tcatgtgaaa aggtttctga cgtgattatg gccgcacgac gggaattaac agactttgaa       180
     cgcggaatgg tagttggagc tagacgcatg ggacattcca tttcggaaat ggttagggaa       240
     ttcaacattc cgagatccac agtgtcaaga gtgtgccgag aatacctaat ttcaggcata       300
     acctcccacc atggacaacg cagtggccga ccgcctgcac ttaatgaccg agaccaacga       360
     cgtgtgcgca gaatggtcag tgttaacaga caagcaacac tgcgtgaaat aaccgcagga       420
     atcaatgtgg gacgtacgac ggacgtgtcc gttaggacag tgcggcgaac tttggctgta       480
     ctgggctatg ccagcagaag accgactcga gtgcctttac taacagcacg acatcgcctg       540
     cagcgcctct cctgggctcg tgaccatatc ggttggaccc tagacgactg gaaaaccgtg       600
     gcttggtcag atgagtcccg atttcagttg gtaagagctg atggtagggt tcgagtgtgg       660
     cgcagacccc acgaatccat ggacccaagt tgtcaacaag gaactgtgca agctggtggt       720
     ggctccataa tggtgtgggc tgtttttaca tggaatggac tgggtcctct ggtccaactg       780
     aaccgatcat tgactggaaa gggttatgtt cagctacttg gagaccactt gcagccattc       840
     atggacttca tgtacccaaa caacgatgga atttttatgg atgacaatgc gccatgtcac       900
     cgggccacaa ctgttcgcga ttggtttgaa gaacattctg gacaattcca gcgaatgatt       960
     tggccaccaa gatcgcccga catgaatccc atcgaacatt tatgggacat aatcgagaag      1020
     tcagttcgtg cacaaactcc tgcaccggca acactttcgc aattatggac gtctatagag      1080
     gcagcatggc tcaatatttc tgccggggac ttccaacgac ttgttgagtc catgccacgt      1140
     cgagttgctg cacttcgccg ggcaaaagga ggtccgacac gatattagga ggtatcccat      1200
     gacttttgtc gcctcagtgt a                                                1221
//
ID   IC-Crse     repbase;    DNA;    INV; 1225 BP.
XX
AC   .
XX
DT   20-APR-2020 (Rel. 25.05, Created)
DT   20-APR-2020 (Rel. 25.05, Last updated, Version 1)
XX
DE   Incomer family of Mariner DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Incomer;
KW   IC-Crse.
XX
OS   Cryptotermes secundus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea; Termitoidae; Kalotermitidae; Cryptotermitinae;
OC   Cryptotermes.
XX
RN   [1]
RP   1-1225
RA   Sang Y., Gao B., Diaby M., Zong W., Chen C., Shen D., Wang S.,
RA   Wang Y., Ivics Z. and Song C.;
RT   "Incomer, a DD36E family of Tc1/mariner transposons newly
RT   discovered in animals.";
RL   Mob DNA 10, 45-45 (2019).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1188
FT                 /product="IC-Crse_1p"
FT                 /translation="MASRRELSEFERGMIVGARRMGHSISEVVRSFNIPRS
FT                 TVSRVYREYLVEGISTHRGQRSGRPRVLNDRDQRRLARIVRGNRQATLAEI
FT                 TSTFNAGGTRRISSRSVQRSLASMGYGSRRPTRVPLLTPRHRTQRLTWACD
FT                 VANWTLEDWQHVAWSDESRYQLFRADGRVRVWRRPHEAMDPSCQQGTVQAG
FT                 GGSILVWGVFTWHELGPLVHLNTSLTGDRYVTLLGDHLQPFMDFMYPHNDG
FT                 IFQQDNAPCHRAGVVQNWFEEHSGEFRRMVWPPRSPDMNPIEHLWDVVERS
FT                 IRTQNPAPTNTRELWAAIQTAWLNISPEVFRPLVESMPRRVAALRRARGGP
FT                 TRY"
XX
SQ   Sequence 1225 BP; 270 A; 317 C; 355 G; 283 T; 0 other;
     tacactcaag tgccaaaagt catgggatag cagtatgtaa atttattttt aagtggcgcc        60
     accgtccctt gacggcttgg gaatgcccag agcagtatca gttgtgaggt gttctctcgt       120
     gagtcaggtt gaacaccggc cagtctgctc atggcaagcc gacgtgaatt atcggagttt       180
     gaacggggca tgatagtggg tgccaggcgg atgggacatt ccatttccga agttgtgcgg       240
     tcattcaaca ttcctcgatc cacggtgtca cgtgtgtacc gggaatacct tgtggaaggc       300
     atttccaccc accgtggaca gcgcagtggc cgaccacggg tgcttaatga tcgtgaccag       360
     cggcgtctag ctagaattgt ccgtggtaac agacaagcga cactggctga aatcacatcc       420
     acattcaatg caggaggtac cagacgcata tccagcaggt cagtgcagcg ttctttagct       480
     tccatgggat atgggagcag aagaccgacc agagtgcctc tgttaacacc acgacaccgg       540
     acacagcgcc tcacctgggc ttgtgacgtc gctaattgga ccctggagga ttggcaacat       600
     gtggcgtggt ccgatgagtc acggtaccag ttgtttcggg cggatggtag ggttcgggtg       660
     tggcgcagac cccatgaggc catggacccc agttgtcaac aaggcaccgt gcaggctggt       720
     ggtggttcca tactggtgtg gggtgtgttc acgtggcatg agttgggtcc gctcgtccac       780
     ctaaacacgt cattgaccgg tgaccgctac gttacactgc ttggtgacca tttgcagccc       840
     ttcatggact tcatgtaccc ccacaacgat gggatattcc agcaggacaa tgcaccgtgt       900
     catcgggccg gagttgtcca gaattggttc gaggagcatt ctggagagtt ccgacgaatg       960
     gtgtggccac cacgttcgcc cgacatgaac ccaatcgagc atttatggga cgtggtggag      1020
     aggtccattc gcacccaaaa tcctgcacct acaaatacca gggagctgtg ggcggctatc      1080
     cagacggcat ggctcaacat ctctccagag gtcttccgtc cacttgtgga atcgatgcca      1140
     cgtcgagttg ctgcacttcg ccgggctaga gggggtccta cacgatacta ggtacctatc      1200
     ccatgacttt tggcacttca gtgta                                            1225
//
ID   IC-Mahr     repbase;    DNA;    INV; 1224 BP.
XX
AC   .
XX
DT   20-APR-2020 (Rel. 25.05, Created)
DT   20-APR-2020 (Rel. 25.05, Last updated, Version 1)
XX
DE   Incomer family of Mariner DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Incomer;
KW   IC-Mahr.
XX
OS   Machilis hrabei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Monocondylia; Archaeognatha; Machilidae; Machilis.
XX
RN   [1]
RP   1-1224
RA   Sang Y., Gao B., Diaby M., Zong W., Chen C., Shen D., Wang S.,
RA   Wang Y., Ivics Z. and Song C.;
RT   "Incomer, a DD36E family of Tc1/mariner transposons newly
RT   discovered in animals.";
RL   Mob DNA 10, 45-45 (2019).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           150..1187
FT                 /product="IC-Mahr_1p"
FT                 /translation="MAVRRELSDFERGMVCGARRMGHSISEVVAAFNIPRS
FT                 TVSRVYREYQLEGITSHHGQRSGRPRLLNERDQRRLGRMITANRQIVLRQM
FT                 TAELNEGRDTDVSMRTVRRNLASMGYGSRRPTRVPLLTMRHRQQRRAWARE
FT                 HVHWTVDDWKKVTWSDESRFQLIRADGRVRVWRRPHESMDPTCQQGTVQAG
FT                 GGSIMVWGAFTWHGLGPLVKLDTSLTGHRYVQLLGDHLQPFMQFTYPDNDG
FT                 IFQEDNAPCHRARIAREWFDEYSGQFQRMIWPPRSPDMNPIEHIWDMLERA
FT                 IRARNRTPHTTTQLWEALQSEWLQISSDDFRRLVESMPRRVAALHRARGGP
FT                 TRY"
XX
SQ   Sequence 1224 BP; 306 A; 291 C; 341 G; 286 T; 0 other;
     tacactgagg tgacaaaagt catgggatag cagtggcaaa gacttcaagt ggcgatagca        60
     tcgcgtgcaa acgatataaa taggcggatc ggtgtcatta cgttcagttg ctctatcgtg       120
     agtgttacgg aaggtcgttt actttgataa tggctgtgcg acgagagtta tcggattttg       180
     aacgtggaat ggtgtgtggc gcgagaagga tgggacattc aatatcggag gtggttgccg       240
     cattcaacat ccctcggtct acggtgtcaa gggtctaccg ggagtatcaa ctggagggca       300
     ttacctccca ccacggacaa cgcagtggtc ggccacgcct gctcaatgaa cgggaccaac       360
     ggcgtctggg taggatgata accgctaaca gacaaatcgt cctacgtcaa atgacagctg       420
     aattgaatga gggacgtgat acagatgttt caatgcgaac agtgcgacga aatctggcat       480
     cgatgggata tggcagcaga cgaccgacta gggtgccatt actcacaatg agacatcggc       540
     aacaacgccg tgcctgggcc cgtgaacacg tccattggac cgtcgatgac tggaaaaagg       600
     tcacgtggtc tgatgaatct cgattccagt tgatacgggc tgatggtagg gttagagtct       660
     ggcgtagacc ccacgaatcc atggacccaa cgtgtcaaca agggactgtg caggccggtg       720
     gtggctccat aatggtgtgg ggtgcattta cgtggcatgg tttggggcct ttggttaaat       780
     tagacacctc actgaccggc catcgctatg tccagctgct gggtgaccat ctgcaaccct       840
     tcatgcagtt cacataccct gacaatgatg gcattttcca ggaggacaat gcgccatgcc       900
     atcgggccag aattgctcga gaatggtttg acgaatattc aggacaattc cagcgaatga       960
     tttggcctcc ccgatcgccc gatatgaacc ccattgaaca catttgggat atgcttgaaa      1020
     gggccattcg tgcaaggaat cgtacacctc acacaaccac gcaattgtgg gaggctctcc      1080
     agtcggaatg gctgcaaata tcttcagatg acttccgccg acttgtcgag tctatgccac      1140
     gtcgagttgc tgctcttcac cgagctagag gaggtcccac tcgatattag gtacgtatcc      1200
     catgactttt gtcacctcag tgta                                             1224
//
ID   IDEFIX_I    repbase;    DNA;    INV; 6222 BP.
XX
AC   AJ009736;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   Internal portion of IDEFIX retroelement.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag; pol;
KW   Gypsy superfamily; env; internal portion; IDEFIX_I; IDEFIX_LTR.
XX
NM   IDEFIX_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Vaury C.;
RT   "IDEFIX_I.";
RL   Direct Submission to Genbank (23-JUL-1998)Vaury C., Faculte de
RL   Medecine, Inserm U384,.
XX
RN   [2]
RA   Desset S., Conte C., Dimitri P., Calco V., Dastugue B.
RA   and Vaury C.;
RT   "Mobilization of two retroelements, ZAM and Idefix, in a novel
RT   unstable line of Drosophila melanogaster.";
RL   Mol. Biol. Evol 16(1), 54-66 (1999).
XX
DR   GenBank; AJ009736; Positions     595    6816.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..1434
FT                 /product="IDEFIX_I_1p"
FT                 /translation="MAVPQLSETHLNQLLNQIKELNYYDGAPGKLSGFVNQ
FT                 VEQLLSLYPTQEARQAHVIYGAVKRLLVDSALEVVTQERANTWLDMKKALA
FT                 MAFKDHRPYVTLIRQLEDISYPGSICKFIEKLETQYWIMFDKLELESDHVD
FT                 KSNYTEMLNKTVKSVIDRKLPDRIYMSLARKDIDTIYKLKQASMELGLYDA
FT                 IPENHRSNRTEMNKRRNRGNYNQNNNQKYYNNRNHNYSNYYPSMNQNHNTQ
FT                 PPQNPTQPMTNQNQYSPRFIPNNQRGNYYAFRRDLTQAQQNNPLNNTLNFQ
FT                 PSTSNNINRQGPVKRQRESQSDQSRMDVNFHQAASDTQMIEKDIQVPM"
FT   CDS           1470..4805
FT                 /product="IDEFIX_I_2p"
FT                 /translation="MIDTGSSINIIRENFENLEEKEENLIVYTIKGPITLK
FT                 RSIIIKPTSVCPSAQKFYIHKFSDNYDFLLGRKYLEDTKAKIDYANETVTL
FT                 GSKVFKFLYEEKKGETASKCLDPQEKNDSALVDRTKPKMQKVKTAPKCLKP
FT                 KHQQQKKETALPKCLISNVVKDTVDNDVTHLDPMSVDNDIVNFAINNELRE
FT                 CNEYRLEHLNAEEVECLKKFLYEYRDIQYKEGENLTFTSTIKHVIQTQHED
FT                 PVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRKSKSPYCSPIWVVPKKADAS
FT                 GKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFH
FT                 QIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYK
FT                 DCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDKCEFMKKETEF
FT                 LGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFAK
FT                 IVKPMTLKLKKGAIIDTKCKEYIESFEKLKVLITSDPILIYPDFSKPFSLT
FT                 TDASNVAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELLAIVWATKYFR
FT                 SYLFGRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDYKIKYLPGKE
FT                 NHVADALSRTKIEVMVGEVANSADATIHSAIEDNLNYIPITERPINYFSRQ
FT                 IEIEKGDNDTTSVQHLFQKLKIKIVYKEMTPELAKNLIKEYVCTKKSAIYF
FT                 PNDEDFLIFQRAFTEIISPNNFTKLLRCTTKLIDILTYAEFKDLILKKHKE
FT                 LLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAKTEHQTQMTYET
FT                 TPEIFNTREKYMIDFYLTGNQIFLSCIDIYSKFASLVELKSRDWLEAKRAI
FT                 TKIFNDMGKPQEIKADKDSAFMCLALQNWLRSEGVQISISTSKNGISDIER
FT                 FHKTVNEKLRIIGSQQNVEDRCTKFERILYIYNHKTKHNSTKRFPADIFLY
FT                 AGSPDFNVQQNKIDRIEYLNKNRHDFEVDIKYRQAPLVKSKITNPFKKTGR
FT                 IGQVDDKHFEETNRGRKIVHYKSKFKKQKKFNKSKYDNSRPTKEAQSTQHT
FT                 SNNA"
FT   CDS           4654..6183
FT                 /product="IDEFIX_I_3p"
FT                 /translation="MINISKKQIVAGRSFTISQNLRNRKSLIRANMIIPDQ
FT                 PKKHKVHNILLIMLSCILSLIITVKCNNIEVNPVNAKNGYLIFQTGTMEIP
FT                 TSYEYHYLSINITKTMLMFEDIVSEANNYPNVPQIQYLVDKLKREINGLRI
FT                 ISRSKRGLLNVVGKAYKYLFGTLDEDDREELEEKINNMSEDSVKTHDLNTI
FT                 LDVINSGIDIINKLKVDKEQHQQIAVLIFNLEQFTEYIEDIELGLQLTRLG
FT                 IFNPRLLKHDYLKHVNSEKMLKIKTSTWLKTDTNEILIISHIPSEVTKVPI
FT                 FQIVPYPDEHNYILTEQIFDKFYIFDNQVFHKDTNRDIFDKCIIGIIKQEQ
FT                 TQCKYIKTHKNYQINYIEPNILLTWNIPETAVNQDCTHNKILISGNNIIKI
FT                 KNCTIQIDEFLISNNLADFTQTIYITNNVTRLEPINHLQTREMIETHVKHY
FT                 NFFQIICITTFVIMIISLTLYVAYKFKNIPKKIIVNIVSKKNTRTLKIMSM
FT                 KIFNKEIILPYTQI"
XX
SQ   Sequence 6222 BP; 2599 A; 1101 C; 951 G; 1571 T; 0 other;
     ggcgcagtcg gttaggatcc aataaaataa aagagtcctt ttagtacggt actgatcaac        60
     tgaaggatat gctatacgac tagctatcca agatcagcga attaaaatag tgattcaaaa       120
     atatttttta atccgcaaaa gaatctacgt gaaagtagta ttcaaaataa aatcccgtgc       180
     ggtcggaaac aaaaattaat ttaaattttt taattccgaa acttaaaacc aagtttaaag       240
     aaaacttaaa atcaagaaaa cttaaaacca agtttaaaga aaacttaaaa tcaagaaaac       300
     ttaaaaccaa gtttaaagaa aacttaaaat caagaaaact taaaaccaag tttaaagaaa       360
     actcaaaatc aagaaaactt aaagccaaaa taagctagaa aactaaaaga catcatggca       420
     gtcccacaac tctcagaaac acacctaaac caactgctaa accaaatcaa agaattaaac       480
     tactacgatg gcgcacctgg caaattatct ggattcgtca accaagtgga acaactgctc       540
     agtttatacc caacacagga agcaagacag gcacacgtca tatatggagc agtgaagcgg       600
     ttattagtgg attcagcctt agaagtcgta acccaggaaa gagctaacac atggctggac       660
     atgaagaaag cactggcaat ggcattcaaa gaccatagac cttatgtaac tctcatcaga       720
     caattagaag acatatcata cccaggaagt atctgtaagt ttatagaaaa attagaaaca       780
     caatactgga ttatgttcga taagttagaa ttagaaagtg accatgttga taaatcgaat       840
     tataccgaaa tgttaaacaa aactgttaaa tcagtaatag atcgaaaact gccggataga       900
     atttatatgt ctttggcacg taaagatatt gatacaattt ataaattaaa acaagcatca       960
     atggaattag gcctttatga tgctattcca gaaaatcacc gttctaatag aacagaaatg      1020
     aataaacgta ggaacagggg aaactataat caaaataata atcaaaaata ttacaataat      1080
     agaaatcaca actacagtaa ttattatcct agcatgaatc agaatcataa tacacaacca      1140
     cctcagaatc cgactcaacc tatgacaaat caaaaccaat attcaccgcg tttcataccg      1200
     aataatcaaa gagggaatta ttatgcattt agacgagact taacacaagc tcagcagaac      1260
     aacccactta ataacaccct taacttccaa ccttcgacat cgaataatat taacagacaa      1320
     gggccagtaa aaagacaacg cgagagtcag agtgaccaaa gcaggatgga tgtaaatttt      1380
     catcaagctg cctcggacac tcaaatgata gagaaggaca tacaagtccc tatgtaaaaa      1440
     taattcatca taataaaaat tataagggaa tgatcgatac aggatcatca attaacatca      1500
     taagagaaaa ttttgagaac ttagaagaaa aggaagaaaa cctaatagta tacactatta      1560
     aaggaccaat aacactaaag agaagtataa taataaaacc tacttcagta tgtccgtctg      1620
     ctcaaaaatt ctacattcac aaattttctg ataactatga tttcttgtta ggtcgaaagt      1680
     atttagaaga tacaaaagct aaaatagatt atgctaacga aacagtaaca ctaggctcaa      1740
     aagtatttaa gtttctctat gaagaaaaga agggcgagac cgcatccaaa tgccttgacc      1800
     cacaagaaaa gaatgattcc gctctagtgg acagaaccaa accaaaaatg caaaaggtta      1860
     agaccgcacc taagtgcctt aaaccaaagc atcaacagca gaagaaagag accgcattac      1920
     ccaaatgcct catttcaaat gttgttaaag acacagtgga caatgatgta acacatctcg      1980
     atcccatgtc cgttgacaac gatatagtca acttcgcgat taacaatgag ttacgcgaat      2040
     gtaacgagta tagactcgaa cacttaaatg cagaggaagt tgaatgttta aagaagttcc      2100
     tatacgaata tagagacatt cagtacaaag agggcgaaaa tttgaccttc accagtacta      2160
     ttaaacatgt catccagact caacacgaag acccagtata ccgtaaaccc tacaagtacc      2220
     ctcaaagcgt tgaccaagaa gttaacaaac aaattaaaga aatgatagaa caagggattg      2280
     ttcgcaaatc gaagtcccct tattgttctc ctatttgggt ggtccccaag aaggcagacg      2340
     cctctgggaa acaaaaattc aggttggtag tcgattacag gaacctaaat gagataactg      2400
     ttaacgacaa atttcccatt ccccgaatgg atgagatatt ggacaaacta ggtagatgcc      2460
     aatactttac cactatagat ctagccaagg gttttcacca aatccaaatg gatgaaaatt      2520
     ctattgcaaa aacagctttt tcaactaagc atgggcatta tgaatatact cgtatgccct      2580
     ttggtttaaa aaacgctcca gctacttttc agagatgcat gaataatctt ctggaagatt      2640
     taatctacaa agactgttta gtctatttag acgatattat tgtttattcc actccattgg      2700
     aagaacacat tttatcccta aagaaagtct ttgaaaaact gagagacgct aatttaaagt      2760
     tgcaactaga taaatgtgaa ttcatgaaga aagaaactga attcctagga cacatcgtca      2820
     caacaaatgg catcaaacca aatccaaata aaactaaagc aattacaaat tttccattac      2880
     ccaagacacc taagcaaata aaatcatttt tgggattatg tggattctat cgcaagttta      2940
     ttcctaactt tgccaaaata gttaaaccca tgaccctcaa attaaagaaa ggtgctataa      3000
     tagacaccaa atgtaaagaa tacatcgaat catttgaaaa attaaaagtt ttgataactt      3060
     cagacccgat attaatctat cctgattttt caaaaccttt ttctttgaca actgatgcta      3120
     gcaacgtagc tattggtgca gtgttatcac aaaatcacaa gccagtttgt tatgccagta      3180
     gaacgctaaa cgaacatgaa atcaactatg ctacgattga aaaagaattg ttagctatag      3240
     tttgggctac aaaatatttc aggtcatact tattcggcag accatttgaa gtattaagtg      3300
     atcacaagcc actggtatgg ctcaacaaca ttaaagaacc aaacatgaaa ttgcaaagat      3360
     ggaaaataaa acttaatgaa ttcgattata aaatcaaata tcttccaggc aaagaaaacc      3420
     atgtcgcgga tgctctttcc cgcacgaaaa tagaagttat ggttggcgag gtcgcaaata      3480
     gcgcagacgc aactatacac agtgccattg aagataatct aaattacata cccataacag      3540
     aaagaccaat aaattacttc tctagacaaa tagagataga aaaaggcgat aacgatacaa      3600
     caagtgtaca acatttgttt caaaaattaa agattaagat agtctataaa gaaatgacac      3660
     ctgaactcgc caaaaacctc attaaggaat atgtgtgcac caaaaagagt gcaatttatt      3720
     tccctaatga cgaagatttt ctgatcttcc agagagcgtt taccgaaatt ataagcccta      3780
     acaatttcac aaaactcttg agatgtacca caaagttaat tgatatacta acgtatgcag      3840
     aattcaaaga tttaatctta aagaaacata aggaactttt acatccgggt atagaaaaaa      3900
     caatcaattt atttaaagaa gaatattact atcctgatag tcaaaagctt attcaaacca      3960
     ttatcaatga atgtcaaatt tgttatctag caaaaacgga acatcaaaca caaatgacat      4020
     atgagactac accagaaata tttaacacaa gagaaaaata catgatagat ttttatctca      4080
     caggaaacca gatcttctta tcttgcattg atatctattc gaaatttgca tcactagttg      4140
     aattaaaaag tagagattgg ctagaagcaa aaagagccat tactaaaata ttcaatgaca      4200
     tgggaaaacc gcaagaaatt aaagcagaca aagactcagc ttttatgtgt ttagccttac      4260
     aaaattggtt aagatctgaa ggtgtacaaa tttctataag cactagcaaa aatggtatat      4320
     ctgatataga aagattccac aagaccgtaa acgaaaagct aagaatcatt ggtagccaac      4380
     aaaatgttga agataggtgc acaaaattcg aaagaattct atacatatac aatcacaaaa      4440
     ctaaacataa tagtactaaa agatttccag cagacatttt cctatatgca ggcagtccag      4500
     attttaatgt acaacaaaac aaaatcgata ggatagaata cctcaataag aatagacacg      4560
     attttgaagt tgatataaaa tatagacaag ccccacttgt aaaaagtaaa ataaccaatc      4620
     catttaaaaa gacaggaaga attggacaag tagatgataa acatttcgaa gaaacaaatc      4680
     gtggcaggaa gatcgttcac tataagtcaa aatttaagaa acagaaaaag tttaataaga      4740
     gcaaatatga taattccaga ccaaccaaag aagcacaaag tacacaacat acttctaata      4800
     atgcttagtt gcatactatc acttatcatc acggtcaagt gcaacaatat agaagtaaat      4860
     ccagtaaacg cgaaaaatgg ataccttata ttccaaacag gaacaatgga aattccaacc      4920
     agctatgaat accattattt aagcataaac ataacaaaga caatgctcat gttcgaagat      4980
     atagtaagtg aagcaaacaa ctatcctaat gtaccacaaa tacaatattt agtcgacaaa      5040
     ttaaaacgag aaataaatgg gttaagaatt attagtcgaa gtaaaagagg tcttttaaac      5100
     gtagtaggaa aagcatacaa atacttattc ggcacattag atgaggatga cagagaagag      5160
     ttagaagaaa aaataaacaa catgtcagaa gactctgtaa aaacccatga cctaaacacg      5220
     attctagatg taatcaatag tggtatagat ataattaata agctcaaagt agataaagaa      5280
     caacaccaac aaattgcggt actaatattt aacctagagc aatttacaga atatatagaa      5340
     gacatagaat tgggtctgca attaaccaga ctaggaattt tcaatccaag attactaaag      5400
     catgactatt taaaacatgt aaattcagaa aaaatgctaa agataaaaac gtcaacctgg      5460
     cttaaaacag acacgaacga aattttgatt atttcccata ttcctagcga agttactaaa      5520
     gttccaatat tccaaattgt tccgtaccca gatgaacata attatattct aaccgagcaa      5580
     atattcgata aattctacat atttgataac caagtattcc ataaagatac caatagggat      5640
     atattcgaca aatgtattat tggaatcatc aaacaagagc aaactcaatg caaatatatt      5700
     aaaacacata aaaattacca aataaattat atagaaccaa atatactatt aacatggaat      5760
     attcctgaaa cagctgttaa ccaagactgt acacacaata aaatattaat ttcaggaaac      5820
     aacatcatta aaattaaaaa ttgtaccata caaatagatg aattcttaat ctctaataat      5880
     ctagcagact ttacacaaac aatttatatc accaacaatg taacacgtct agaaccaata      5940
     aatcacttac aaacgagaga aatgatagaa acccatgtaa aacactataa cttttttcaa      6000
     attatatgca ttacaacgtt cgtcataatg ataattagtt tgactctgta tgtagcatat      6060
     aagtttaaaa atatacctaa gaaaattatt gtcaatatcg taagcaaaaa gaacacacgc      6120
     accttgaaaa taatgtcaat gaaaatattc aacaaggaaa taatattacc ttatacccaa      6180
     atttaacgac ctgaggacag gccaaattca aaggttgggg ga                         6222
//
ID   IDEFIX_LTR  repbase;    DNA;    INV; 575 BP.
XX
AC   .
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Long terminal repeat from IDEFIX retroelement.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; IDEFIX_I; IDEFIX_LTR.
XX
NM   IDEFIX_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Vaury C.;
RT   "IDEFIX_LTR.";
RL   Direct Submission to Genbank (23-JUL-1998)Vaury C., Faculte de
RL   Medecine, Inserm U384,.
XX
RN   [2]
RA   Desset S., Conte C., Dimitri P., Calco V., Dastugue B.
RA   and Vaury C.;
RT   "Mobilization of two retroelements, ZAM and Idefix, in a novel
RT   unstable line of Drosophila melanogaster.";
RL   Mol. Biol. Evol 16(1), 54-66 (1999).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 575 BP; 220 A; 127 C; 74 G; 154 T; 0 other;
     agtgacatat ccataagtcc ctaagactta agcatatgcc tacatactaa tacacttaca        60
     acatatacac cccaatacaa catacactac tccggatgta cccaacagat accagaaaga       120
     ataagattgt taaaaaaacc ccaattctag ataagtcacc cactggtaga ctaaacatcc       180
     gtcccctaat ttaaacaatt ccttgcttaa gcctcacccc atcgtcacat tcccacgttc       240
     aaagctcgga gccgcaatcc cgaaaaacaa aagtatcgat ttcaataaac aaattataag       300
     aatctaagag cacttgtatc caagagcaaa tgcacttgaa tccaagagaa acgcaaagct       360
     ttttctcttc acgatcagaa tcctaaagtc taaagtccat attagaaaag ctcgataccg       420
     aggcttgaac gtcaatcaaa tcagaataat tatcagagtt cagtttgaga cctaattgta       480
     aaaggtcggt gttcttctca aataaaaaga ttgtaatcat ttagtgaaat aaaaattata       540
     tttttttcac ttataaatat tgcaagtatt taatt                                  575
//
ID   IFP2        repbase;    DNA;    INV; 2475 BP.
XX
AC   J04364;
XX
DT   13-MAY-1999 (Rel. 4.04, Created)
DT   13-MAY-1999 (Rel. 4.04, Last updated, Version 1)
XX
DE   Trichoplusia ni transposon IFP2.
XX
KW   DNA transposon; Transposable Element; IFP2; TTAA superfamily;
KW   Autonomous DNA transposon.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-2475
RA   Cary C.L., Goebel M., Corsaro G.B., Wang G.H., Rosen E.
RA   and Fraser J.M.;
RT   "Transposon mutagenesis of baculoviruses: analysis of
RT   Trichoplusia ni transposon IFP2 insertions within the FP-locus of
RT   nuclear polyhedrosis viruses.";
RL   Virology 172(1), 156-169 (1989).
XX
DR   GenBank; J04364; Positions       1    2475.
XX
CC   TTAA target site duplication. Transposase encoded by IFP2
CC   transposon has been found in human (LOOPER transposon in
CC   humrep.ref).
XX
SQ   Sequence 2475 BP; 802 A; 418 C; 496 G; 759 T; 0 other;
     ccctagaaag atagtctgcg taaaattgac gcatgcattc ttgaaatatt gctctctctt        60
     tctaaatagc gcgaatccgt cgctgtttgc aatttaggac atctcagtcg ccgcttggag       120
     ctcggctgag gcgtgcttgt caatgcggta agtgtcactg attttgaact ataacgaccg       180
     cgtgagtcaa aatgacgcat gattatcttt tacgtgactt ttaagattta actcatacga       240
     taattaatat tgttatttca tgttctactt acgtgataac ttattatata tatattttct       300
     tgttatagat atcgtgacta atatataata aaatgggatg ttctttagac gatgagcata       360
     tcctctctgc tcttctgcaa ggcgatgacg agcttgttgg tgaggattct gacagtgaaa       420
     tatcagatca cgtaagtgaa gacgtccaga gcgatacaga agaagcgttt atagatgagg       480
     tacatgaagt gtcagccaac gtcaagcgta gtgaaatatt agacgaacaa aatgttattg       540
     aacaaccagg ttcttcattg gcttctaaca gaatcttgac cttgccacag aggactatta       600
     gaggtaagaa taaacattgt tggtcaactt caaagtccac gagcggtagc cgagtctctg       660
     cactgaacat tgtcagatct caaagaggtc cgacgcgtat gtgccgcaat atatatgacc       720
     cacttttatg cttcaaacta ttttttactg atgagataat ttcgcaaatt gtaaaatgga       780
     caaatgctga gatatcattg aaacgtcggg aatctatgac aggtgctaca tttcgtgaca       840
     cgaatgaaga tgaaatctat gctttctttg gtattctggt aatgacagca gtgagaaaag       900
     ataaccacat gtccacagat gacctctttg gatcgatctt tgtcaatgtg tacgtctctg       960
     taatgagtct gtggatcgtt ttggattttt tgatacgatg tcttagaatg gatgacaaaa      1020
     gtatacggcc cacacttcga gaaaacgatg tatttactcc tgttagaaaa atatgggatc      1080
     tctttatcca tcagtgcata caaaattaca ctccaggggc tcatttgacc atagatgaac      1140
     agttacttgg ttttagagga cggtgtccgt ttaggatgta tatcccaaac aagccaagta      1200
     agtatggaat aaaatcctca tgatgtgtga cagtggtacg aagtatatga taaatggaat      1260
     gccttatttg ggaagaggaa cacagaccaa cggagtacca ctcggtgaat actacgtgaa      1320
     ggagttatca aagcctgtgc acggtagttg tcgtaatatt acgtgtgaca attggttcac      1380
     ctcaatccct ttggcaaaaa acttactaca agaaccgtat aagttaacca ttgtgggaac      1440
     cgtgcgatca aacaaacgcg agataccgga agtactgaaa aacagtcgct ccaggccagt      1500
     gggaacatcg atgttttgtt ttgacggacc ccttactctc gtctcatata aaccgaagcc      1560
     agctaagatg gtatacttat tatcatcttg tgatgaggat gcttctatca acgaaagtac      1620
     cggtaaaccg caaatggtta tgtattataa tcaaactaaa ggcggagtgg acacgctaga      1680
     ccaaatgtgt tctgtgatga cctgcagtag gaagacgaat aggtggccta tggcattatt      1740
     gtacggaatg ataaacattg cctgcataaa ttcttttatt atatacagcc ataatgtcag      1800
     tagcaaggga gaaaaggttc aaagtcgcaa aaaatttatg agaaaccttt acatgagcct      1860
     gacgtcatcg tttatgcgta accgtttaga agctcctact ttgaagagat atttgcgcga      1920
     taatatctct aatattttgc caaatgaagt gcctggtaca tcagatgaca gtactgaaga      1980
     gccagtaatg aaaaaacgta cttactgtac ttactgcccc tctaaaataa ggcgaaaggc      2040
     aaatgcatcg tgcaaaaaat gcaaaaaagt tatttgtcga gagcataata ttgatatgtg      2100
     ccaaagttgt ttctggactg actaataagt ataatttgtt tctattatgt ataagttaag      2160
     ctaattactt attttataat acaacatgac tgtttttaaa gtacaaaata agtttatttt      2220
     tgtaaaagag agaatgttta aaagttttgt tactttagaa gaaattttga gtttttgttt      2280
     ttttttaata aataaataaa cataaataaa ttgtttgttg aatttattat tagtatgtaa      2340
     gtgtaaatat aataaaactt aatatctatt caaattaata aataaacctc gatatacaga      2400
     ccgataaaaa cacatgcgtc aattttacgc atgattatct ttaacgtacg tcacaatatg      2460
     attatctttc taggg                                                       2475
//
ID   IKIRARA1    repbase;    DNA;    INV; 610 BP.
XX
AC   U55049;
XX
DT   15-SEP-1998 (Rel. 3.08, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Anopheles gambiae transposon Ikirara1.
XX
KW   IKIRARA1.
XX
NM   IKIRARA1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-610
RA   Romans A.P.;
RT   "IKIRARA1.";
RL   Direct Submission to Genbank (15-APR-1996)Zoology, University of
RL   Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada.
XX
RN   [2]
RP   1-610
RA   Romans P., Bhattacharyya R.K. and Colavita A.;
RT   "Ikirara, a novel transposon family from the malaria vector
RT   mosquito, Anopheles gambiae.";
RL   Insect Mol Biol 7(1), 1-10 (1998).
XX
DR   GenBank; U55049; Positions       1     610.
XX
SQ   Sequence 610 BP; 181 A; 122 C; 123 G; 184 T; 0 other;
     cagggtttca cactttatct caagaccgcg ggaccccttc ccgaatctgt cttagccaaa        60
     gccaagactg cggtatgatg cttgaaaacg ttgatgatac ctgaattcat cggatgcaat       120
     gctgaatctg cggcacattt ctcgaaacac actggtccgc gccgaggaca tgcggtcgaa       180
     tattttttta cacggataac ctttgtgtac atcagtgtac tgaaaacagt taattatttt       240
     ttcgtgtttt taccagaaaa gattatttaa acagttcaaa ctaatttcta aacacttgta       300
     aatattttaa ttaaacaaat atgcattcac tcattttatt aaattgtctt tttttggtaa       360
     aaaaacgaaa aggataattg agtgtttcta atagactgat gtacacaaag gttatccgtg       420
     taaaaaaata ttcgaccgca tgtcctcggc gcggaccagt gtgtttcgag aaatgtgccg       480
     cagattcagc attgcatccg atgaattcag gtatcatcaa cgttttcaag catcataccg       540
     cagtcttggc tttggctaag acagattcgg gaaggggtcc cgcggtcttg agataaagtg       600
     tgaaaccctg                                                              610
//
ID   Ingi-1_LMi  repbase;    DNA;    INV; 3839 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 19.11, Created)
DT   21-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3839
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3145-3145 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1269
FT                 /product="Ingi-1_LMi_1p"
FT                 /translation="MECRGMSQSKKVELQKIINDFKINVFIILEANVSTET
FT                 LTYYNFKGYQIHILPKYRQVASGILVGIQKDITNKFVIIKDMNDGEDLAEI
FT                 VKVDVWFQKQHFKIYGIYNPPNNIINTNALNIENKTVIVGDFNAHFCTIGY
FT                 NDENEAGKAVQDFIASNNIELVYSTSDSPTYLHYNGTATNPDLTIVSSDIS
FT                 TRTSRNIITGVGTGHRMIISSIMLGSETLFVPKNQVKCSWNFKRANWDAFR
FT                 EELDKELAPANFTLQELSPDKFNEKICEVILLSAKRHIPKGKPCKYKPFGI
FT                 NTWKIKKERDEDRQKQLKMSWTLLMERKSAVMRKELIQAKKDCFSKFISEL
FT                 SYRKETSKVFKFISSLDSEP"
FT   CDS           join(1528..2115,2058..3824)
FT                 /product="Ingi-1_LMi_2p"
FT                 /translation="MIFAEFLKNLGPVAQHTVCTLFNKSWNEGVPAAWKKA
FT                 VIVPILKPKKSGNSFANYRPVSLTSTLSKTMEIMVNNRLSYYLETHEIICA
FT                 QQAGFRKHRSTNQQLLRFSQEVKDALDNSNTTLAVFVDFKGAYDTVWRLKL
FT                 LDKLRIYGITGKMLKWLYLFIHQRYCASRVNNVMSGYKQLKTGVPQGGLSA
FT                 QHYLISTTENWSTPRRVISPTLFNIMINDLPGELEKVEGIKTALYADDLVM
FT                 WISLPKRKIGQLTTKMNEALTTLANWSKENLMTVNTEKTFFQVFSLAHSIP
FT                 NINLQYQNKQLTQCDDPKYLGISLDRKMTWVNHIQNTAEKVKKKLDILKRL
FT                 AGKKWGSSLEVLNSTYKIYIKPSILYGCEVLLPANVSKLEVLQNQALRLIT
FT                 GAVKTTPILALQAATGIPPLKSEIMRLALLQYEKLTRLPNDTYWNNYQHHA
FT                 NRLKTQKGFMQCIDAVRQDHCPPISKEDFAPPVSPLKLCPVIFRLQLNEKV
FT                 VKTETNKELLKNMALEMINANYTQTEWLHIYTDGSLTEANGIAGAGVYSEI
FT                 FCFYKALGQYYSHFDGELEAINLALKQFLSVSKGHKKVVIFCDSTSAIQAI
FT                 ASFQTPLSACINEIKSSIASITKAGTEIVFQWIPAHTGIHGNEMADFLAKK
FT                 GTKISQTNCPKLSYISIKRLINNSFKKKLYDHLTTQGQGKTWLLLLEEKNA
FT                 LPKHPRRETVAAFRRITGHDCLAEHLHRIGILPSPKCVICEREDTIMNWEH
FT                 LRNCERLQYCDGMSDGQLYWEVRRLMTMYQMSEH"
XX
SQ   Sequence 3839 BP; 1409 A; 709 C; 731 G; 989 T; 1 other;
     ggggtgtaac gtatgccgcc tccacgtggt gcaccctggg taamgctaaa tggcatacag        60
     tgaagctcat gatggaactt ctcaatggga atcaatccgg acgtaaaaca gtcccccaat       120
     cggatgtccg ggaggggact acattgaaag aaaaaatgtg aacaccttaa atatattgca       180
     atggaatgca gggggatgtc ccagtcaaag aaagtagaat tgcaaaaaat tataaatgat       240
     ttcaagatca atgtctttat aatattagaa gctaatgttt ctacagaaac tctaacatac       300
     tacaatttca agggatacca gatacatatc ttacctaaat accgccaggt tgcaagtggc       360
     atacttgtgg gcatacaaaa agacataaca aacaagtttg taataattaa agatatgaat       420
     gatggagaag atcttgctga aatagtaaaa gttgatgtgt ggtttcagaa gcaacatttt       480
     aaaatatatg gtatctacaa tccgcctaac aatattataa atacaaatgc cttaaatata       540
     gaaaataaaa ctgtaatagt tggagacttt aatgctcatt tctgcacaat tggttacaat       600
     gatgaaaatg aggcaggaaa agcagtacaa gactttattg catcaaataa tatagaactg       660
     gtctattcaa catcagattc cccaacttat ctccactaca atggcacagc aacaaaccca       720
     gacctgacaa tagtttcttc tgatatcagt acaagaacat caagaaacat tattactgga       780
     gttggaactg gacaccgcat gattattagt agtataatgt tgggctctga aacacttttt       840
     gtgccaaaga atcaagtaaa atgcagctgg aattttaaaa gggccaattg ggatgccttc       900
     agagaagaac tagataagga actggcacct gctaatttca cattacagga attatctcct       960
     gataaattta atgagaaaat ttgcgaagta atacttctaa gcgcaaaacg acatattcct      1020
     aagggaaaac catgtaagta caaaccattc ggaataaaca cttggaaaat aaagaaagaa      1080
     agagacgaag acaggcagaa gcaactaaag atgtcctgga cattattgat ggaaagaaaa      1140
     tccgcagtta tgagaaagga attaatacag gccaaaaagg attgcttctc aaaatttatt      1200
     agtgaactca gttacaggaa agaaaccagc aaggtcttta aatttatatc tagcttagat      1260
     agtgaacctt gagcttataa agaaccaacc caggtggggg gggggggaga acatatatga      1320
     tgacaaagat ctagctacag cttacaacgt ttttcactaa aatcattcat tgacaaaaga      1380
     actgagagaa aagggaaaaa attcagaagt gatattaaga cagcatggca gaatcaaagt      1440
     gaggagagtt ttaatgctga tttcacaatt catgaacttc aatgggcact aaattcacta      1500
     aaaagtaaga agagccctgg ctgtgacatg atctttgcag agtttctgaa aaatctcggg      1560
     ccagtcgcac agcacactgt atgcactctc tttaataaaa gttggaatga aggagtccca      1620
     gctgcatgga agaaggctgt catagtacca atcttaaaac caaagaaatc aggaaactct      1680
     tttgctaatt atcgacctgt ttctctcact tcaactctct ccaagacaat ggaaataatg      1740
     gttaataaca gactttcata ctatcttgaa actcatgaga ttatttgtgc tcagcaagct      1800
     ggcttccgca aacatcgatc aacaaatcaa caactgctcc gcttcagtca ggaagttaaa      1860
     gacgccttgg ataacagcaa tacaactttg gccgtttttg ttgattttaa gggtgcatat      1920
     gacactgtgt ggagactaaa actattagat aaattgcgaa tttatggcat cactggtaaa      1980
     atgctgaaat ggctgtattt gtttatccac cagcgatact gtgctagtag ggttaataat      2040
     gttatgtcag gttataaaca actgaaaact ggagtacccc aaggagggtt atcagcccaa      2100
     cactatttaa tatcatgatt aatgacttac caggagagtt agaaaaagtc gagggcatta      2160
     aaacagctct ttatgctgac gatttagtca tgtggatctc actgccaaag agaaaaattg      2220
     gccaacttac gacgaaaatg aatgaagccc tgactacact agcaaactgg tcaaaagaaa      2280
     atttgatgac agttaacacc gaaaagacat tctttcaagt tttctcgctg gctcattcaa      2340
     tccctaatat aaatttacag tatcaaaata aacaattaac tcaatgtgac gatccaaagt      2400
     accttggcat ctctctggac cgaaaaatga catgggtaaa ccatatacaa aatactgctg      2460
     aaaaggtcaa gaaaaaattg gacatcctta agagattagc tggaaaaaag tggggcagct      2520
     ctcttgaagt tctaaactct acctataaaa tttatataaa acccagtatt ctgtatggat      2580
     gtgaagtatt actcccagcg aatgtatcta aattggaggt tcttcaaaat caagctctac      2640
     gcctgattac aggagcagta aaaacaacac caattttggc tcttcaagca gcgactggca      2700
     ttccacctct aaaatcagaa attatgagac tggcactact ccaatatgaa aaattaacca      2760
     gattacccaa tgacacatat tggaacaact accaacatca tgctaaccgg ctgaaaacac      2820
     agaaaggctt tatgcaatgt attgatgcag taagacaaga ccactgtcca ccaatcagta      2880
     aagaagactt cgctccccca gtcagtccac ttaaactatg cccagtcata ttcagacttc      2940
     aactgaatga aaaggttgtt aagacagaaa cgaataaaga acttcttaaa aatatggctc      3000
     tagaaatgat aaatgctaac tacacgcaaa cagaatggct acatatatat acagatggat      3060
     ccttgactga agcaaatggt atcgctggtg ctggagttta cagtgaaata ttttgttttt      3120
     acaaagcttt aggacagtat tactcccatt ttgatggaga gttggaggca ataaacctgg      3180
     cactaaaaca atttttgtcc gtatccaaag gtcacaaaaa ggttgttata ttttgtgatt      3240
     caacttctgc aatacaggca attgcatcct tccaaacacc tctaagtgct tgcataaatg      3300
     aaataaaatc ctctattgcc tcaatcacca aagctggaac tgaaatagtt tttcaatgga      3360
     taccagcaca tacaggtata catgggaatg aaatggcaga ctttctagcc aaaaaaggaa      3420
     ccaagatttc tcaaacaaat tgcccaaaat tatcatacat ctccattaaa agactcatca      3480
     acaacagttt caagaagaag ttgtatgacc acttgacaac acaagggcaa ggaaaaacat      3540
     ggcttctact gttagaagag aagaacgcac ttcctaaaca cccacgaagg gaaactgtgg      3600
     cagcatttcg aagaattact ggccacgact gccttgcgga acacctgcac aggattggaa      3660
     tcttaccctc accgaagtgt gttatatgtg aaagagaaga caccattatg aattgggagc      3720
     atctaagaaa ctgtgaaaga ctgcaatatt gtgacgggat gtcagatggt caattgtatt      3780
     gggaagttag aagactaatg actatgtatc aaatgtctga gcattaaata aataaataa       3839
//
ID   Ingi-1_Rpro repbase;    DNA;    INV; 3885 BP.
XX
AC   ACPB01056162.1;
XX
DT   02-FEB-2010 (Rel. 15.02, Created)
DT   02-FEB-2010 (Rel. 15.02, Last updated, Version 2)
XX
DE   A family of Ingi non-LTR retrotransposons from Rhodnius prolixus.
XX
KW   Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-1_Rpro.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3885
RA   Kojima K. and Jurka J.;
RT   "Ingi non-LTR retrotransposons from insects.";
RL   Repbase Reports 10(2), 149-149 (2010).
XX
DR   EMBL/GenBank/DDBJ; ACPB01056162.1; Positions       1    3885.
XX
CC   This sequence corresponds to gb|ACPB01056162.1|:623-4507. The AP
CC   endonuclease region is broken.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..3841
FT                 /product="Ingi-1_Rpro_1p"
FT                 /note="includes broken AP endonuclease, reverse
FT                 transcriptase, and RNase H domains and a CCHC
FT                 zinc-finger motif."
FT                 /translation="MRPRNARSTNGLSQGPDNTLLKVFFWNAGGLTPDKFS
FT                 ELKAFIAKEDIDIFGIVEAGASTENPQYFQVPGYQTYVLKRARQVASGIIF
FT                 AAKTSLTVDFIVKKEMVENDRLEAVQADVWAGKLHRRFYVLYNPPSNRPDL
FT                 SWLEAQWGPRDILYGDINAPSVRWGYMQTSPVGRIFEDFIDANPVVAIRNL
FT                 ECSPTFISYSGNTSSPDVILAHAALDGEIEHSLEHAPGDFGHKILKLVITR
FT                 DSSCPKEPRFTRWNLRKAKWDLFSKLSDQEIKEDLIQGSVDAAFNNICTAV
FT                 LKCATQAIPRGCVKRYSPFWNEDLQRLKEERDIARTAYEQSRLQEDKIRLK
FT                 EAGALLRKEIINAKRNSYNQFLENLDFRKDGVQAHRFLSKISKNMEPAKRQ
FT                 PFVASSGKTLTSNEDIAKLFCSYYAKISSWQPEQKNRKLNLKLPPTCLNEK
FT                 ENSLFHTPFCWAELEIALDTMPIKKCAGPDNIPPEFIKHLGGSARSTLLRF
FT                 MNKVWEQGIPSVWRKADILPIPKKGKPTNRPENCRPIALTSMFSKLYERLL
FT                 LSRLQEFLEERQLISDKQAGFRKHRNTVEQVAYLSQEIKNGFHRKQSTVAV
FT                 FVDLKAAFDKVWRERLIQKIRDIGVAGNMYKSIFSFLAQRYIRVKYNGSFS
FT                 PFKQTRKGVPQGAVLSPTLFSLMINDVVAAVEAIPGVRVLLYADDLVIWAT
FT                 SSHVDAIESYLNKAMETLYQWTTNNKLEVNTSKTEYQVFTLSTNKKQVHIK
FT                 FNNQILPQTDSATYLGIKMDGRLGWKKHIDKLVQQGEGRLGLLKRLAGIKW
FT                 GANQDLMTLTYKTYIRPTIEYGNEVLLTASDNSLKALDLLQNKALRLITGA
FT                 AKSTPIAAMEIQTGIEPLQIRREISAINLFERVKRLKIKHWDLQQSSAQRL
FT                 KTQKPLAVKVSEVIATRGLDLGRKQPFERSCVQYGHLAEGKLNLLQPLLKD
FT                 KTSEQEMRALALETIHSRYPARDWLHIYTDGSARAATHNAGAGVYCREFTL
FT                 AEPVGRMCTNFDGEVKAISMALAKLIEDQKDNPQIVLFIDSQAAILAISSR
FT                 HYTDHSEVGIARSHIAFLIERGTRVVLQWVPSHCGLTGNEQADELARRRAE
FT                 MQQPDTPLTFSAVKNVVKSSYNEEIKRTQQHQAEGKRWRTLLENPVSVTAA
FT                 RKEAVACFRMTTGHDYLQKHLHRIGVVDSPMCPLCLQEEKMDSQHLPVCHA
FT                 LIDVVANDSTNPHTHENKAIMTKLYWAARSRMD"
XX
SQ   Sequence 3885 BP; 1212 A; 848 C; 920 G; 905 T; 0 other;
     ggggggtaac attgctcgcg tccgtacaga tagtacacgt gccccctggt tagcgctaaa        60
     tgagcaatag tgtcgccata cactcagccc aataactcca atttgcgaca ccatgagacc       120
     acgaaatgct aggtctacaa acggcctttc tcaaggcccc gacaacactc tgctgaaggt       180
     atttttctgg aacgcaggtg gcttaacgcc ggacaaattc tctgaattga aggcttttat       240
     tgctaaagag gacattgaca tatttggaat agtggaggcc ggtgcttcaa cagaaaatcc       300
     ccaatacttt caagtgccgg gttatcagac ctatgttctt aaaagggcca gacaagtagc       360
     gtcgggaata atttttgctg caaagacgtc acttactgta gatttcattg tcaaaaaaga       420
     aatggtagaa aatgataggc tggaagcggt gcaggcggat gtatgggccg gtaagcttca       480
     caggcgtttt tatgtattgt ataacccgcc ctcgaacagg cccgatctct cctggcttga       540
     agctcagtgg ggtcctcggg acattctata tggggacata aacgctccct ctgtaagatg       600
     gggctatatg caaacctctc ctgtcgggag aattttcgag gatttcatcg atgcaaatcc       660
     tgtagtggca ataagaaatc tggagtgcag ccccacgttt atttcctaca gtggcaatac       720
     tagcagccct gatgttatct tagctcatgc agccttagat ggcgaaattg agcactctct       780
     ggaacatgca cctggagact ttggacacaa gatactgaag ctagttatta ctagagatag       840
     cagctgtcct aaagaacccc ggtttacccg atggaatttg agaaaagcta aatgggatct       900
     cttttccaaa ctgagcgacc aggaaataaa ggaggattta atacagggca gcgtcgatgc       960
     tgcttttaat aatatctgta ctgcagtttt gaaatgtgca actcaagcca tccccagagg      1020
     atgtgtcaag aggtactctc ccttctggaa tgaagatttg caaagattga aggaagaaag      1080
     ggatatagcc agaactgcct atgaacaaag tcgccttcaa gaggacaaga tccgtctaaa      1140
     ggaagcaggt gccctcctta ggaaagagat aatcaatgct aagagaaact cctataatca      1200
     gttcctagaa aatttggact tcagaaaaga tggagtacag gcacatcgct tcctgtccaa      1260
     aataagtaaa aatatggagc ctgctaaacg acagcctttt gttgcctctt ctggcaaaac      1320
     ccttacatca aatgaggata ttgcaaagct cttctgttca tactacgcta aaattagtag      1380
     ctggcaaccg gaacagaaaa accgaaaatt aaatcttaaa cttcctccta cttgccttaa      1440
     cgagaaggaa aattcgcttt ttcacacccc attttgctgg gctgagttag aaatagccct      1500
     cgatacgatg ccaattaaga aatgtgccgg acctgacaat atacctcctg aatttatcaa      1560
     gcaccttggc ggatcagcaa ggagcacttt actaagattt atgaataagg tttgggaaca      1620
     aggtatccca agtgtctggc gaaaggctga catactaccc atccccaaga agggtaagcc      1680
     gacaaacaga cctgaaaact gcaggcctat tgcccttacc agtatgtttt caaaactgta      1740
     cgaacgatta ctgctatcga ggttgcagga attcttggaa gaacgacagt tgatttctga      1800
     taagcaagcc ggcttcagaa agcacagaaa cactgtggaa caggtagcat acctgtctca      1860
     agagataaaa aatggtttcc accgaaaaca gagcacagta gcggtattcg tggatctaaa      1920
     ggcagccttt gataaagtgt ggagggaaag actaattcaa aaaatcagag acattggtgt      1980
     ggcaggaaac atgtacaaaa gcattttctc ctttctagca cagagataca tccgggtaaa      2040
     atataacggt tctttctccc cattcaagca gacgagaaag ggagtccctc agggcgctgt      2100
     tcttagccct accctattct cgctaatgat taacgatgtt gttgcagctg tagaggccat      2160
     tcccggggtc agggtgttat tatacgcaga tgaccttgtg atatgggcta caagcagcca      2220
     tgtagatgcc attgagtcgt atctaaacaa ggcgatggag acgctgtatc agtggactac      2280
     aaacaacaaa ctagaggtta acacgtctaa aacagaatat caggtcttca cactttcaac      2340
     aaataagaaa caggttcaca taaagtttaa taatcaaata ctcccacaaa ctgactctgc      2400
     cacgtacctc ggtattaaga tggatggcag gctaggctgg aaaaaacata ttgacaagtt      2460
     ggtccagcag ggagaaggaa ggctggggct gctaaagaga ttggcgggaa taaaatgggg      2520
     cgcgaaccag gatttaatga ctctgaccta taagacttat atcaggccta ctatagaata      2580
     tgggaatgaa gttcttctga ctgcgtcaga taactcttta aaagcgttgg atctactaca      2640
     aaataaggcg ttaaggttga tcacgggagc cgcaaagtca acacccattg cggctatgga      2700
     gattcagact ggtatagaac cccttcaaat cagaagagaa atttcagcaa taaacctctt      2760
     tgaaagagta aaaaggctga agataaagca ctgggatttg caacagtcgt ccgcccaacg      2820
     cttgaaaaca cagaaaccac tcgctgttaa ggttagcgaa gtcatagcca caagaggcct      2880
     ggatctaggc agaaaacaac cttttgagcg cagctgcgtg cagtacggac acttggcgga      2940
     gggaaaacta aatcttttgc aaccgcttct taaggataaa acttccgagc aggaaatgag      3000
     agcgttggcc ctggagacaa tacattcccg atatcccgct cgggactggc tacatatcta      3060
     cacagatggt tccgcccgag cggcgaccca taacgcaggg gccggagtgt actgtcgaga      3120
     gtttacgcta gctgagccag tgggtaggat gtgcactaat tttgatgggg aggtcaaagc      3180
     tatctccatg gctctggcta aattaataga agaccaaaaa gataaccccc aaatagtgct      3240
     ctttattgat tcccaggctg caatactggc aatctctagt agacattaca ctgaccactc      3300
     ggaggtgggg atagcaagaa gccacatagc ttttctgatc gagcggggaa ctcgtgtcgt      3360
     gctccaatgg gtgccgagtc attgcggcct aacggggaac gagcaagcag atgagctagc      3420
     ccgcagaaga gccgaaatgc agcaacccga cacaccgctc accttctccg ctgttaaaaa      3480
     tgtagtaaag tcttcttata atgaagaaat aaaaaggacc caacagcatc aagcagaagg      3540
     aaagcggtgg cggacgctgc ttgagaatcc tgtttcggta acagctgcaa gaaaggaggc      3600
     tgtggcatgc tttcggatga ctacagggca tgactacctc caaaaacatt tgcacaggat      3660
     tggggtggtg gatagcccta tgtgtccttt gtgtctgcaa gaggaaaaaa tggacagtca      3720
     gcacttaccg gtctgccacg ccttgataga tgtcgtcgcg aacgacagca caaatccaca      3780
     tacccatgaa aataaagcca ttatgaccaa attatattgg gctgccagaa gccgaatgga      3840
     ctgagcacca acggcttggc gttaataaaa aaaaaaaaaa aaaaa                      3885
//
ID   Ingi-2_LMi  repbase;    DNA;    INV; 3872 BP.
XX
AC   .
XX
DT   21-APR-2014 (Rel. 19.11, Created)
DT   21-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3872
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3146-3146 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(56..661,613..1068)
FT                 /product="Ingi-2_LMi_1p"
FT                 /translation="MLNGLQKMFKMQLNTKVSGGKTVLHSDLRERTVLRPK
FT                 QVKKSLNVLQWNAGGMSSAKKSELMKTLDEEKVYVFVIIKANIHDNNKIYY
FT                 ELTNYQMHVLNKSRQIASAILVGVRNGLRNNFTIIKQMXEQDKLEVIKVEV
FT                 WTCSQHFVIYGLYNPPNNKPELDIINIYSKTVIIGDFNAHFQAVGYEDTMF
FT                 LEKQLNSFPQMWRYYVSGKAVEFISSNVVELIYSSTDTPSYLHYNGRLTNP
FT                 DLTLASANIASNVMRKIIADPGSGQRMIISKIQIQNKAKPRVSTLPKCSWN
FT                 FKKAKWNKYLEELEEKLNPCNFDFIKDGPDKNNKKLVLSLRLPKNVSPKED
FT                 NFNINPSGMKH"
FT   CDS           join(1064..1303,1279..2199,2183..3025,3004..3336,
FT                 3336..3839)
FT                 /product="Ingi-2_LMi_2p"
FT                 /translation="NTNKIENRENARKKTESTGEHSDLVEWRKIAAKFKRT
FT                 INESKRGTFNKFIENLDYRKDSGKVYKFIGRLENKYTVENKNQIYCRKQEP
FT                 INVPNTNNTLYNDQNIAKAFNKLYCQSKTIPKEFKQKEKPMKILFKEACLD
FT                 TSNRLFNDDFTSEELTQAISSLKDRKNPGPDNIMPEFLKHLGPVAMETLLK
FT                 LMNQIWKSYIPAIWKKSIIIPILKPGKPADNMHNYRPISLTSIVAKTMEKM
FT                 INSRLMWYLESENLLSANQQGFRKFHSTTGQILNLSQDIKEAFRDKKTSLA
FT                 LFVDFKGAYDNIWRVKLLEKLRNLNISGKMLRWISNFTQERLCATKINDTL
FT                 SKYSKSKMGVPQGAVTSPTLFNTFINDLSSMYLQQKKLNCTVCRTALYADD
FT                 LVIWISLPNNKRDQLSEKMSQVINRLEKWSYENLLEINAQKTFYQIFSLCH
FT                 SQPKLTLKIGGEVIQQNENPKYLGIYMDQKLNWQNHINKTADKAKTRLSIL
FT                 KRLAGSKWGCSRTVLSNTYKTYIRPILTYGSEALVTSATRNINKLEIVQNQ
FT                 ALRIITGGVKTTPLASMRILTGIEPIETSIQRLALLQYEKLIRLPNHDQWT
FT                 KHKESCNNNRRQLKTQISFIEKVENIRLQYHLPEVTAEKFIFPLSPILLPQ
FT                 LQYQLDINDNNKKVKQIHQKSETDPSIMKTTALETISQRYPEDQWLHIYTD
FT                 GSLMQKEGNVGVGIYSKIFCFYQTLGSHHSNFEGEVEAIRTAVNQLNSYLH
FT                 TFDKAVIFCDSKAAISAIVNLRDPKIAKVKDIQEIIKSLQQHNKKIAIQWI
FT                 PSHCGIDGNEKADFLAKKGTKIKQIGKTTLSYFAVKRIINNIFKEELRKIN
FT                 KISCEGKIWETLLDNQLIPDGPRREAVATFRLTTGHDCLAAHLHKISILPS
FT                 PECVLCHKSGTIMNSDHLKECSELYNCNLDLTTLYWEARRRMT"
XX
SQ   Sequence 3872 BP; 1549 A; 682 C; 665 G; 974 T; 2 other;
     ggggtgtaat gtagactgcc tctgtctggt ttagccagca ggtgcaccct ggataatgct        60
     aaatggtcta cagaagatgt tcaagatgca actcaataca aaagtatccg gaggtaaaac       120
     agtcctccat tcggatctcc gggagaggac agtattgaga cccaaacaag taaagaaatc       180
     tctaaatgta ttacagtgga atgctggagg aatgtcttca gctaaaaagt ctgaacttat       240
     gaaaactcta gatgaagaaa aagtttatgt atttgtaata atcaaagcta acatccatga       300
     caataacaaa atatactatg aactgacaaa ttaccaaatg catgttctca ataagtcaag       360
     gcagatagca agtgcaattt tagttggtgt tcgcaatggg ctaagaaaca attttaccat       420
     aattaaacaa atgmawgaac aagataaatt agaagttata aaagtagaag tatggacatg       480
     tagccagcat tttgtgattt acggcttata caaccctcca aacaataaac ctgagttaga       540
     tatcattaat atttattcca aaacagtgat aattggtgat tttaatgctc acttccaagc       600
     agttggctat gaagatacta tgtttctgga aaagcagttg aattcatttc ctcaaatgtg       660
     gtagaactta tatacagctc cactgacaca ccctcttacc tgcattataa tggtagattg       720
     acaaatccgg atttaacttt ggcatctgct aatattgcct ctaacgtaat gagaaaaata       780
     atagctgatc cagggagtgg acaacgtatg ataatttcga agattcagat acaaaataaa       840
     gcaaaaccta gagtaagcac actaccaaaa tgtagctgga acttcaagaa ggcaaaatgg       900
     aataaatact tagaagaatt ggaagaaaaa ttgaatccgt gtaattttga tttcattaaa       960
     gatggaccag ataaaaacaa taaaaagctt gtcttatcat tgaggctgcc aaaaaatgta      1020
     tccccaaagg aagacaattt caatataaac ccttctggaa tgaaacacta acaaaattga      1080
     aaacagagag aatgcaagga agaaaacaga atcaacagga gaacatagtg atctggtaga      1140
     atggagaaag attgcagcaa aatttaaaag aacaataaat gaatccaaaa gaggtacttt      1200
     caacaaattc attgaaaact tagattacag aaaagatagt ggcaaagtct ataaattcat      1260
     cggaagactt gaaaataaat atactgtaga aaacaagaac caataaatgt cccgaatact      1320
     aacaacacat tatataatga tcaaaatatt gcaaaagcgt tcaataaatt gtattgtcaa      1380
     tcaaaaacta tacctaaaga gtttaaacaa aaagagaaac caatgaaaat cctattcaaa      1440
     gaagcatgtt tagacacatc taatagatta tttaatgatg attttacttc agaagaactt      1500
     acacaagcaa tatcaagctt gaaggatagg aaaaaccctg gaccagacaa tattatgcct      1560
     gagttcttaa aacatcttgg cccagttgca atggaaacat tactgaaatt aatgaatcaa      1620
     atatggaaat catatatacc tgccatctgg aaaaagagca tcatcatacc aatattaaaa      1680
     ccaggaaaac cagcagataa tatgcacaat tacagaccca tatctttgac aagcatagta      1740
     gctaaaacta tggagaagat gataaattct cgactgatgt ggtaccttga atcagagaac      1800
     cttctttctg caaaccaaca aggatttaga aaattccatt caactactgg tcagatttta      1860
     aacctctcac aagacataaa agaagccttc agagataaga aaacctccct agcattattt      1920
     gtggatttca aaggagccta tgacaatata tggagagtaa aattgctaga aaaactaagg      1980
     aatttaaaca tttcgggaaa aatgttgcgc tggatatcca acttcacgca agaaagacta      2040
     tgtgcaacga aaataaatga cacattaagt aaatatagta agtccaagat gggagttcct      2100
     caaggtgctg tgaccagtcc aacattattt aacaccttta tcaatgacct ctcctctatg      2160
     tatctacaac agaagaagtt aaactgcact gtatgcagat gacctagtta tctggatttc      2220
     actgccaaac aacaaaaggg atcaactatc agagaaaatg agccaagtga taaatcgcct      2280
     tgaaaagtgg tcatatgaaa accttctaga aataaacgct caaaaaacct tctaccaaat      2340
     attttcgcta tgtcactctc aaccaaaatt aactctgaaa attggagggg aagttataca      2400
     gcagaatgaa aaccctaaat acttaggaat atatatggat caaaaattaa actggcagaa      2460
     ccacatcaat aaaactgctg ataaagcaaa aaccagactc agcatactga aaagattagc      2520
     aggaagtaaa tggggatgtt caagaacagt gctcagcaat acttacaaaa cctacataag      2580
     accaatttta acatatggta gtgaagcact tgttacttct gctaccagaa atattaacaa      2640
     gttagaaata gtccagaacc aagctttaag aatcataact ggtggagtaa aaactactcc      2700
     tctagcatca atgagaattc tgactgggat agaacccatt gaaacaagta tccaaaggtt      2760
     agcactgctt cagtatgaaa aacttattcg tctacccaat cacgatcaat ggacaaaaca      2820
     taaagagtca tgtaacaata atagaagaca gttaaaaaca cagattagct tcatcgaaaa      2880
     agtagaaaat ataagattac agtatcacct accagaagtc actgctgaga aatttatttt      2940
     cccactctct ccaattcttc ttcctcaatt acagtatcaa ctagatataa atgataataa      3000
     taaaaaagtg aaacagatcc atcaataatg aaaactacag cattagaaac aatcagtcag      3060
     agataccccg aagatcagtg gctacacatc tacacagatg ggtcattaat gcaaaaagaa      3120
     ggaaacgttg gtgtaggaat atacagcaaa attttctgtt tttatcaaac tttaggatca      3180
     caccactcta attttgaagg tgaagttgaa gccatcagaa ctgcagtaaa tcagctaaat      3240
     agctatttgc acacatttga caaagcagtc atattctgtg actccaaagc agcaatatca      3300
     gcaattgtta acttaagaga tccaaaaatt gctaagtaaa agatatccaa gaaataatta      3360
     agtccctaca gcaacacaac aagaaaattg caattcagtg gataccatct cactgtggca      3420
     tagatggtaa tgagaaagct gattttctag ccaaaaaggg cacaaaaatt aaacaaattg      3480
     gaaaaactac cctgtcatat tttgcagtaa aacgcattat taacaacata tttaaagaag      3540
     aattgagaaa aatcaataaa atctcatgtg aggggaagat ctgggaaacc ctcttggata      3600
     accaactgat accagatgga ccaagaagag aggcagtagc aacattccgc ctgactactg      3660
     gacatgactg tttggccgcc cacctgcaca agatctccat cctgccgtct ccagaatgtg      3720
     ttctgtgtca caagagtggt accataatga acagtgatca tttaaaagag tgttcagaat      3780
     tgtacaattg taatttagac ttaacaacat tgtattggga agcaagaagg cgaatgacgt      3840
     aagtcaagtg ccggaacatt aaaataataa ta                                    3872
//
ID   Ingi-2_RPr  repbase;    DNA;    INV; 3886 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   02-FEB-2010 (Rel. 20.10, Last updated, Version 1)
XX
DE   A family of Ingi non-LTR retrotransposons from Rhodnius prolixus.
XX
KW   Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3886
RA   Bao W. and Jurka J.;
RT   "Ingi non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3420-3420 (2015).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consenus.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..824
FT                 /product="Ingi-2_RPr_1p"
FT                 /translation="MANAQANGLSQGLDDCLLRILFWNAGGISKDKFTELK
FT                 HIILSNNIDVFGIIEAGSASDDLRHYQMPGFQTNALKRARQVSSGIIVAAK
FT                 SSLLVSFNILKEMEDEDKLECAELRVWKDAYLRRLLFAYNPPGNKPKLEWL
FT                 EAQWDRHSILCGDLNAPSMRWGYSCTSAVGRIWQDFIDSNPVLFVDNTPNA
FT                 PTFLSHAGHTSHPDIVLSPFEATGNCSFTPTCPWKLWS"
FT   CDS           706..3870
FT                 /product="Ingi-2_RPr_2p"
FT                 /translation="MHRPFYPTPVIRLTPILCCHPSRQPEIVHSLLPAPGS
FT                 CGHKILLIDLQSTSKKPHNKKRTRWNIKKANWQLYRKTTGESVTGNLVADN
FT                 VDHSFRKLQTAIISSAHKAVPRGCVKKYSHFWNDALQSLKDDRDHARDQYE
FT                 STRNADDLIDLKRKAATLKKSIIQAKRMTYKRFXQNLDFRKDGAKAHKFIS
FT                 ALNNKVPSDNQPMNKGDKLITNEKDIAKHFCKYYRKVSNFRPKKENGSPNT
FT                 SLPMTCNRQEDEDLFNKXFQLPDLDCALKTTDTNKSAGPDELLPAFLVNLG
FT                 PKAKVVVLAFLNLVWQKGIPSEWRKAEIVPILKKDKSPNQPENFRPISLTS
FT                 CFCKIFERMVLRRLQHFLDRNKLISDCQAGFKPRRNTIEHVIRLSQSIKQG
FT                 FQHKQSTLAVFIDFRAAFDNVWRKMLLHKLLNLGISGNLYRFIHSFLAQRF
FT                 VRVRYKDAVSAFGQTKQGLPQGSVISPVLFNVMINDVLEAIETQPGLNALL
FT                 YADDLVIWATSSNIQALESCLNDSLKVIERWCLENEMKVNPRKTEYQLFTL
FT                 STKQYALSLKYCNEHIVRTDEATYLGVKFDRKLTWGKHVEKLVERSEQRIS
FT                 LLKRLTGIKWGATQEVLTLAYKTYIRPSLEYGTEALITAPETICGKLDKVQ
FT                 NAALRVILGAPRSTPITSMEMQADIEPLAVRREIAAITLDERLKRLPIKYW
FT                 QTESVPTLRLKTQKCFAGKVRDLREQIGLEDLQDRKPFSDSDSWEEPQLAP
FT                 GRLNLIEDVRKQSSPPHELKLFALETINNVFPSPPWVHVYTDGSAEGANRN
FT                 AGAGVYAVQFQLSVPVGKLASNFDAELHAIAIALEEVAKRDFCKTALLVDS
FT                 QAAISAVTGYDDKDDIIIKKCRALIDRLLSQGKQVVLQWIPSHVGLQGNEE
FT                 ADRLAKEGANQVQFEAPLTLRTAKREIRLRFRSKMAEEQRGKAQGKQWEVL
FT                 GNIKGRLPTDLPRSTAVACFRLLTGHDYLQKHLHRIGIKDNSICVLCGGDV
FT                 MNGPHLLACSQLQDVRDNMPTDPHKKNSILYWAARRRMAVVAIDREGVG"
XX
SQ   Sequence 3886 BP; 1220 A; 804 C; 883 G; 975 T; 4 other;
     ggggggtgat gtcagtcgcc tactcgtggt gccccctttt ctcgctgaac gactgacaat        60
     tgtcgccgaa tgcagcccat gacaacacta caataattgc gacaataata aaaattataa       120
     ttataattat aattataatc atggctaacg cacaagcaaa cggcctttct caaggccttg       180
     acgactgcct gcttagaata ttattctgga atgcaggtgg aattagtaag gacaagttca       240
     ctgaactaaa acatattatt ttaagtaata acattgacgt ttttggcatt attgaagcag       300
     gctctgcttc agacgatttg cggcattacc aaatgccagg tttccagacc aacgcactaa       360
     aacgcgcccg tcaagtttca tccggaataa ttgtggctgc aaaatcttca ttgctggtta       420
     gctttaatat cctgaaggaa atggaagatg aggataaatt agaatgtgct gaactgaggg       480
     tatggaagga tgcatatctg cgacgtctct tatttgccta taacccgccc ggaaacaaac       540
     ctaaactaga atggttggaa gcacagtggg atagacactc aattctttgt ggtgacctaa       600
     atgctccatc aatgcgatgg ggttactcat gtacaagcgc ggtaggcagg atttggcagg       660
     atttcattga ttcaaaccca gttttatttg ttgacaatac tccaaatgca ccgacctttc       720
     tatcccacgc cggtcatacg tctcaccccg atattgtgtt gtcacccttc gaggcaaccg       780
     gaaattgttc attcactcct acctgcccct ggaagttgtg gtcataagat actcctaatc       840
     gatttacagt ccacctctaa gaagcctcac aataaaaagc gaaccaggtg gaatattaaa       900
     aaggcaaact ggcagcttta tagaaaaacc acgggtgagt ctgttactgg gaatttagta       960
     gccgataatg tggatcactc attccgaaaa ctacaaacag ccattataag ttctgctcac      1020
     aaagctgttc ctagaggatg tgtaaaaaag tattctcatt tttggaatga tgcgctgcaa      1080
     tcactgaaag acgacaggga ccatgccaga gatcagtatg agagcactcg caatgctgat      1140
     gacctcattg acctgaagcg taaagcagca actcttaaga aaagtataat ccaagccaaa      1200
     agaatgacct ataaaagatt ctwacaaaat cttgatttta ggaaagatgg ggcaaaggcm      1260
     cataaattca tttctgcatt gaataataag gtcccctccg acaatcaacc aatgaataaa      1320
     ggcgacaaat tgattacaaa tgaaaaggat attgccaagc atttctgtaa atattatcgc      1380
     aaagttagca attttagacc gaaaaaagaa aacgggagtc ctaacacctc gttaccaatg      1440
     acttgtaata gacaagagga tgaagaccta tttaataaam gttttcaact gcctgatttg      1500
     gattgtgcct taaaaaccac cgatactaat aaaagtgcag ggccggatga gttactgcca      1560
     gcattcttgg tgaaccttgg ccctaaagct aaagtagtag tgcttgcctt tctcaatctt      1620
     gtatggcaaa aaggaatccc atcagagtgg agaaaagccg aaattgtgcc gattttaaaa      1680
     aaagataagt cccctaacca gcctgagaat tttagaccaa tttcactcac gagctgtttt      1740
     tgcaagatat tcgaaagaat ggttctcagg aggctgcagc atttcctgga tagaaacaag      1800
     ctcatctcag actgccaagc tggcttcaaa ccccgtagaa acaccatcga gcatgtgata      1860
     cgtctctcgc aaagtattaa gcaagggttt cagcacaagc agagcacgtt ggcggtattt      1920
     attgatttta gggcagcatt cgacaatgtg tggagaaaga tgttactgca caaactacta      1980
     aacttgggca taagtggcaa cctctatcga tttatacatt catttcttgc tcaaaggttc      2040
     gttcgggtta gatataaaga tgctgtatcg gcttttggac aaacgaaaca aggcctcccg      2100
     caaggctctg ttataagccc agtattattt aacgtaatga taaatgatgt actggaagca      2160
     atagaaactc agccaggttt gaatgctctg ctatatgcgg atgatttggt gatatgggcc      2220
     acaagtagca atatacaggc tttagaatca tgcttaaatg attcacttaa agtaatcgaa      2280
     cgatggtgtt tggaaaatga gatgaaggta aaccccagga aaacagaata ccaactcttc      2340
     acgctgtcca ctaagcagta tgcactctcc ttgaagtatt gcaatgaaca tattgtaaga      2400
     acmgatgaag ccacttactt gggtgtaaaa tttgaccgaa agctaacttg ggggaagcat      2460
     gttgagaagc tggtggaacg aagcgaacaa cgcatatcgc ttctcaagag actgacgggt      2520
     attaaatggg gtgcgacaca ggaagtgctt accctcgcct ataaaacgta tataagaccc      2580
     tcgttagagt atggcacgga agctctgatt actgcccctg aaacaatatg tggtaaacta      2640
     gacaaagttc aaaacgcggc cctaagagtt atactaggtg cccctcgttc gacccctatt      2700
     acttcaatgg agatgcaagc agatatcgag ccacttgccg tccgacgaga gattgctgcg      2760
     attaccctcg atgaaagatt aaagcgatta cccattaagt actggcaaac cgaaagtgtg      2820
     cccacattga ggttgaaaac tcaaaaatgc tttgcgggta aagttcgaga tttacgtgag      2880
     caaatagggc ttgaggattt acaagatcgg aaaccctttt ctgactctga ttcctgggaa      2940
     gagccacagt tggcgccggg tagactgaat ttaatagaag atgtaagaaa gcaaagcagt      3000
     cccccgcatg aattaaaact gtttgccctg gaaacaataa ataatgtttt cccttctccg      3060
     ccttgggtgc atgtttacac cgatggttct gccgaaggtg caaaccgtaa tgctggcgca      3120
     ggagtctacg cagtgcagtt ccaattgagt gttcctgttg gaaagttagc atcaaatttt      3180
     gatgcagaac tgcacgccat cgccatagcg ttggaagagg tggctaaaag ggacttttgc      3240
     aagactgctt tacttgtgga ttcccaagca gctatttcag cagtaaccgg ctatgatgat      3300
     aaagacgaca tcattataaa gaaatgcagg gctctcatag ataggttact ttcgcaaggg      3360
     aagcaagttg tactgcagtg gatcccgagt catgttggac tccagggcaa tgaagaagct      3420
     gacagattgg caaaagaggg ggcgaatcaa gttcagttcg aggccccgct gacgcttaga      3480
     actgctaaga gagagatccg gctccgattt cgatcgaaga tggccgaaga acaaagggga      3540
     aaagcacaag ggaagcagtg ggaggtgctt ggaaatatca aaggaagact ccccaccgat      3600
     ctgcctagat caacagctgt ggcatgcttt agattattga cggggcatga ttaccttcag      3660
     aagcatctcc accgaattgg cattaaggac aacagtatct gtgtgctttg tggtggagat      3720
     gttatgaacg gtccgcacct gctagcatgc tcccaactgc aggatgtccg ggacaatatg      3780
     cccacggacc cacacaaaaa aaatagtatt ttatattggg ctgccagacg tcgcatggcc      3840
     gtagtagcca ttgaccgtga aggcgtaggg taaaaaaaaa aaaaaa                     3886
//
ID   INV2j_DB    repbase;    DNA;    INV; 889 BP.
XX
AC   AF368887;
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   27-FEB-2008 (Rel. 13.03, Last updated, Version 2)
XX
DE   Drosophila buzzatii chromosomal inversion 2j.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   KEPLER transposon; GALILEO transposon; chromosomal inversion 2j;
KW   INV2j_DB.
XX
NM   INV2j_DB.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-889
RA   Caceres M., Puig M. and Ruiz A.;
RT   "Molecular characterization of two natural hotspots in the
RT   Drosophila buzzatii genome induced by transposon insertions.";
RL   Genome Res 11(8), 1353-1364 (2001).
XX
RN   [2]
RP   1-889
RA   Marzo M., Puig M. and Ruiz A.;
RT   "The Foldback-like element Galileo belongs to the P superfamily
RT   of DNA transposons and is widespread within the Drosophila
RT   genus.";
RL   Proc Natl Acad Sci U S A 105(8), 2957-2962 (2008).
XX
DR   Genbank; AF368887; Positions       1     889.
XX
CC   Chromosomal inversion region containing GALILEO and KEPLER
CC   transposon sequences.
XX
SQ   Sequence 889 BP; 292 A; 155 C; 182 G; 260 T; 0 other;
     aaaaaaaaat acctactaat tgtagggccc tcaaaatgat tccaaacttc agtgattttt        60
     aattaatgac attcgcggta agaaaaaatg gaaacgataa cttttcgaac gcaaattgag       120
     aagaacgcaa aatgagccat acgagcaagt tagcaaaaat gatctagtca acctaactga       180
     gcaagtgagc caaaatgagc aagtgagcca tatcactaac catacaacac atagactgga       240
     caactagaac aaactttttt cacgaagcag attatgattt cccgtcctag tcatcttcgt       300
     atttgctcgg ctctttaatt tactgttcgg gcagcgactc gcggacaaat ttcaattttt       360
     gtgagctgct ggcttgtgcc tgtgtagaca cacatacgta catacatata tatatatgag       420
     aggcatagag agagtgagtg agtaaagaaa gaatagcaca cagcggactt catatgagaa       480
     taaaatcatt tcgttcgagc gctggcagcg aactgaatat caactgctgt attttcgctg       540
     tccgaacagt aaattaaaga tccgagcaaa tacgaagatg actaggacga gaaatcataa       600
     tctgcttcgt gcaaaaagtt tgttctagtt gtccagtcta tgtgttgtat ggttagtgca       660
     tatatacata tgtgtacgtc tgtgatgtga taataattat cgtcgagtat cacttgtata       720
     ggcgtttgaa tgaatactct gccttgggca tttgcatatt tcttgcatgg gtctcaaata       780
     ttgggcgtgt tcatacctca acttaagatt ttgggttcaa attgcaggag aggtcaataa       840
     atttgtatta cataatttga cactatggct aaaatgggac atgttattt                   889
//
ID   INVADER1-I_AG repbase;    DNA;    INV; 4626 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   INVADER1-I_AG, an internal portion of the INVADER1_AG Gypsy-like
DE   LTR retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER1-I_AG; INVADER1-LTR_AG;
KW   INVADER1_AG; endogenous retrovirus; gag; integrase; protease;
KW   reverse transcriptase.
XX
NM   INVADER1-I_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4626
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER1_AG: a family of Gypsy-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 15-14 (2002).
XX
DR   [1] (Consensus)
XX
CC   INVADER1_AG is a member of Gypsy-like retroviruses that belong
CC   to the INVADER group originally identified in Drosophila (see
CC   description of INVADER1_DM in drorep.ref).
CC   Members of this group encode one long polyprotein composed of
CC   the gag, protease, reverse transcriptase and integrase domains.
CC   A similar 1363-aa polyprotein, called INVADER1_AGp is encoded
CC   by INVADER1-I_AG (positions 488-4576).
CC   Positions of domains in INVADER1-I_AGp:
CC   gag: 1-350; protease: 360-540; reverse transcriptase: 550-1050;
CC   integrase: 1085-1363.
CC   INVADER1-I_AG is flanked by long terminal repeats,
CC   INVADER1-LTR_AG.
CC   Solo LTRs or proviral copies are flanked by 4-bp target site
CC   duplications.
CC   INVADER1_AG has been integrated into the mosquito genome during
CC   the
CC   last one million years. There is 99% identity of INVADER1-I_AG
CC   copies
CC   with the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..4576
FT                 /product="INVADER1-I_AGp"
FT                 /translation="MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANR
FT                 IVKYRATVASGDNAGPSGSGHRAEPANATDDVENYAGNQPYESCDDDSEEK
FT                 ADLDLPEEEHGDSFVAEDDDETEEDPFQTAVRISTPKRPQRVYAFRDVEDS
FT                 IETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSS
FT                 LRNVQTYAILKKELIAEFAPFVRSSDVHRILANRKKETAETMREYVYEMQR
FT                 IAAQIDLDEPSLCEYIVNGVTDDDFFKSLLYEAQTIRVLKEKLLNFEKVRM
FT                 ARKKKTTDKEENKRVLSSSSRVDKRAEQRCYNCGNKGHQARACAQTQGGPK
FT                 CFSCREYGHKASECARNKSVVPAKINVTEESVGMVDVVLNKTSVKALFDSG
FT                 SNQNLVTIGCYKRIEGSPLIDTSMWFQGFGGMRTKAIGMFTVDVTVDDNVF
FT                 SGVRFFVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTDEMFSIV
FT                 CDNEDNLDVSPRFSERVKAVISGYKPAGNVNSRVETKIILHDETPVRSSPR
FT                 RFAPGEKAVLEKTIDEWLAAGIIRESESDFASPVTLARKKDGSLRVCVDYR
FT                 ELNRKMVKDCFPMRNIEDQIDRLKSARVFTTLDLKNSFFHVPVEKSSQRYT
FT                 GFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLII
FT                 PSLDEESNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYR
FT                 IAPSKLRSVQLFPEPKNVKQLQRFLGLTSYFRKFIAGYATISKPLTSLLQK
FT                 GVEFVFGEEERSSFDELKRCLVTDPVLKIYDESAETELHTDASKYGYGAAL
FT                 MQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRVYLLGIK
FT                 FKIVTDCAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDAL
FT                 SRAPVMIVKSDPMIEAIRKMQQSDERAKAIIELLKTQSFEDFVMCDGLLMK
FT                 VVKGREVIVVPSGMQSDLIRRIHEKGHLGARKIEGIIEQEFYIPNASEKIK
FT                 QTIECCVKCILAERKRGKVDGLLYPIAKGDVPLDTYHVDHLGPMDITEKRY
FT                 KYLFVVVDAFSKFTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIISDKGAA
FT                 FTSNDFKRYCEDQDIERVEVTTGVPRGNGQVERVNQVIIAMLRKMSVNDPA
FT                 KWYKHVANIQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIRV
FT                 AQHHDQREQTRAGARVSIEKAQEEQRRSYDLRARSATTYREGDLVVIKRTQ
FT                 FGPGRKYAAEYLGPYKVTSVRPHDRYDVEKINGEGPKVTSTASSHMKPYRF
FT                 "
XX
SQ   Sequence 4626 BP; 1323 A; 804 C; 1339 G; 1159 T; 1 other;
     tgggggctca accgggatac ttttttccca aacgagtgag gcttttgcga tgaaagcaat        60
     cggtgcgata ttgtgtgatg tttcgtgagg ctattttgtg attaaatagc aaaaaactgt       120
     gaggcttttt tataagcaaa tagtgagacg ttttgtgaaa gagaagaaca gtgaggctta       180
     tgtagcaacg cgtgcggatc agtgaggctt tcgtagcaat ccgtgcgaat cagtgaggct       240
     tgtgaagcaa ttagtgaggc tttattttta gcaaccagtg agaatccgtg agtgatagcg       300
     aggcttttcg aagcacaccg agtgaagaaa ttaagcgagg cttcacagca atctgtgtgt       360
     gaaaattctg tgtgaatttt acgggtcaac tagtgtgaca ttttgtgcgt gagtgcggga       420
     agtcgcgaat tgcctggtag tgtgtgtcgg ctttgtgagt gaaagtaccg cgagagagag       480
     agatagaatg gcaacggtca agcagctttg tgaagatttc acgaagattg ggttggtgcg       540
     cgagtgtgag aggcttggcc tagaaaccac tggaggaaaa gtggaaatcg cgaatcgaat       600
     tgtgaaatac cgagcgacgg ttgcgtcagg ggacaacgcc ggtccgtccg ggagtggaca       660
     cagagcagaa ccagctaacg ccacagacga cgtcgaaaac tacgcgggta accaaccgta       720
     cgagagctgc gatgatgatt ccgaggaaaa agcggatctg gatcttccgg aagaagaaca       780
     cggtgatagc tttgttgccg aggatgacga tgaaacggaa gaagaccctt ttcaaactgc       840
     tgtgcgaatc tcgacgccta aacgaccgca acgcgtttac gcatttcgag atgtggaaga       900
     tagcattgag acgtttggag cagaggatgg gcacgatgtg cgtatttggc tggcacacct       960
     cgattccgta tcaaagtcag caggatggaa tgacgaacaa aagctaatca tgttacgtaa      1020
     aaagatgacg ggaatcgcaa gaaagttcgt gtcgtctttg cgtaatgtgc aaacttatgc      1080
     gatattgaaa aaagagctga tcgcggaatt tgctccattt gtgaggtcga gtgatgtgca      1140
     tcggattctc gcgaatcgga agaaggaaac ggccgagacg atgcgagagt acgtttacga      1200
     aatgcaacga attgctgccc aaatcgattt ggacgaacca agcttgtgtg agtacatcgt      1260
     taacggtgtg accgacgatg attttttcaa atcattgctg tacgaggcgc aaacaattcg      1320
     agtattaaaa gaaaagttgc tcaactttga aaaagtgcgc atggctcgaa agaagaaaac      1380
     gacggataaa gaagaaaaca aacgagtttt gtcatccagt agccgcgttg acaaacgggc      1440
     ggagcagcga tgctacaatt gcggaaacaa aggacaccaa gctcgcgcgt gcgcgcagac      1500
     acagggtggt ccgaaatgtt tctcgtgtcg tgagtacggt cataaggcga gcgagtgtgc      1560
     gcggaacaaa agcgtcgttc ctgcgaaaat caacgtgacg gaagaatcgg tgggaatggt      1620
     tgatgtcgtg ttgaacaaaa catcggtcaa ggcattgttt gacagtggaa gcaaccaaaa      1680
     cttggtgaca ataggttgtt acaaaagaat cgagggatca ccgctgatcg atacttcgat      1740
     gtggttccag ggctttggtg gcatgagaac aaaggcgatc ggcatgttca cggtggacgt      1800
     tacggtggat gataacgttt ttagtggtgt gcgatttttt gtggtgccaa atgaaagcat      1860
     gtcttacgat gcagtattgg gcagagattc cttgaactat tttgaagtta cgatgacaac      1920
     ggcgggtgtc aaagtcaggc catatggttc aacggatgaa atgttttcta ttgtgtgtga      1980
     caatgaagac aatttggatg tgtctcctcg attttcggaa agagtaaagg cggttatttc      2040
     ggggtacaaa cctgcgggaa acgtgaatag tcgtgttgag acgaaaatta ttttgcatga      2100
     cgagacgcct gtgcgttcgt cgccaaggcg ttttgctccg ggtgaaaagg cggtgctgga      2160
     gaaaacaatc gacgagtggt tagccgcggg aataattcga gaaagtgaga gtgattttgc      2220
     gagtccggta acgttagcga gaaaaaagga cggttcctta cgcgtttgtg ttgattatcg      2280
     cgaacttaat cgaaaaatgg ttaaggattg ttttcccatg aggaacatag aagatcaaat      2340
     cgatcgcttg aagtcagcca gagtttttac cacacttgac ttgaaaaatt cgttttttca      2400
     tgttcctgtg gaaaagtcga gccagcggta cacaggcttt gttacccaca caggccagta      2460
     cgagtttctt agaacgcctt tcgggttggt caatagtcca gcgagtttca gccggtttgt      2520
     agcggatgtg tttcgggaat tcatcaagag tgagcgtgtg ttggtgtatg tggatgattt      2580
     aataattcct tcattagatg aggaaagtaa ttttcaaacg ttgaaggaat tgttaaatgt      2640
     cgcgagtgag aacggtgtgc agttcaattg gaaaaaatcg caatttttaa aggatgaagt      2700
     ggagtatctc gggtatgtga ttcgcggcgg gtgttatcgc atagcgccga gtaagttgcg      2760
     atcggttcag ctttttccgg aaccgaaaaa tgtgaagcag ctgcaaagat ttttgggact      2820
     tacgagttac ttccgaaaat ttattgctgg ttacgcgaca atttcgaagc ctttgacaag      2880
     tttgcttcag aaaggtgttg agtttgtgtt tggtgaagag gagcgttcga gttttgatga      2940
     gttgaaacgg tgtttggtga ccgatccggt gttaaagatc tacgacgaaa gtgccgaaac      3000
     cgagctccat acggacgcgt caaagtacgg ttatggtgct gcgcttatgc agaagagcga      3060
     cgacgacaag tttcatcctg ttgccttcat gagtcaacaa acatcaaacg cggagaagaa      3120
     ttatagtgcg tatcatttgg aagtgctagc ggtggttcgc gctgttgaga agtttcgtgt      3180
     gtatctctta ggcatcaagt ttaagatcgt tacagattgt gcagcgtttg ggcatacttt      3240
     aaaatcgaaa gaactgtcgg ctagaatcgc gagatgggct ttgatgctcg aagagtatga      3300
     atatgaagtg gtgcataggc caggttcatc gatgaagcat gtggatgcgt tgagcagggc      3360
     accggtgatg attgtgaaaa gcgaccctat gatagaagcg atcagaaaaa tgcaacaaag      3420
     tgacgagcgt gcgaaggcaa ttattgaatt gttaaaaacr caatcttttg aagattttgt      3480
     catgtgcgat gggctgctga tgaaagtagt gaaaggtagg gaagtgattg tggtaccatc      3540
     ggggatgcaa agcgatttga tacgtaggat acacgaaaag ggtcacttag gagctcgtaa      3600
     gatagagggt attatcgaac aggagtttta cattccaaac gcgagtgaga aaataaaaca      3660
     aacgattgag tgttgtgtga aatgtatcct cgcagagcgt aaaaggggaa aagttgacgg      3720
     tttattatac ccaatcgcga aaggtgacgt tccgttagac acgtatcacg tagaccattt      3780
     gggtccaatg gacattacag agaaaaggta taaatatttg tttgtagtag ttgatgcgtt      3840
     tagtaagttt acttggatat atcctactaa aacgacgaat tcatttgaag taattcagcg      3900
     attaacgaca cagagcgagg tatttggtaa tccaaggcgt attataagcg ataaaggggc      3960
     tgcgtttacg tcaaacgatt ttaagcggta ttgtgaggat caggatatcg agcgtgtgga      4020
     agttacgaca ggtgttccgc gcgggaacgg gcaggtagag agggtaaatc aagtgattat      4080
     tgctatgttg cgaaagatga gtgtaaacga tcccgcaaag tggtataagc acgttgccaa      4140
     tattcagcgg tggattaatt ctagcccaca tcagagcatc ggtgttaccc cttttgaagc      4200
     gatgtttggg gtaccgatga gacacgaagg agatttacga ctaggtgagc tgatggaaga      4260
     aattcgagtg gcccagcatc acgatcaacg agagcagact cgagctggtg ccagggtttc      4320
     tatcgagaaa gcccaagaag aacaacggag atcgtacgac ttacgagcgc ggtcggctac      4380
     aacttaccgc gaaggcgacc tggtggtgat taagcggacg cagttcgggc ctggaaggaa      4440
     gtacgcggct gagtaccttg gaccatataa ggtaaccagt gttcgtcctc atgatcgcta      4500
     tgacgtggaa aagatcaatg gcgaagggcc aaaagtgacg tcgacggctt cgtcacatat      4560
     gaaaccctat cggttttaat gcggtgagga tccttcgggg cgaaaggatc ggtcgaggaa      4620
     aggccg                                                                 4626
//
ID   INVADER1-LTR_AG repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   INVADER1-LTR_AG, a long terminal repeat of the INVADER1_AG
DE   Gypsy-like LTR retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER1-I_AG; INVADER1-LTR_AG;
KW   INVADER1_AG; endogenous retrovirus; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-204
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER1_AG: a family of Gypsy-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 16-15 (2002).
XX
DR   [1] (Consensus)
XX
CC   INVADER1-LTR_AG is a long terminal repeat from INVADER1_AG.
CC   The internal portion of INVADER1_AG is listed in Repbase as
CC   INVADER1-I_AG.
CC   INVADER1_AG is a member of Gypsy-like retroviruses that belong
CC   to the INVADER group originally identified in Drosophila (see
CC   description of INVADER1-I_AG).
XX
SQ   Sequence 204 BP; 61 A; 34 C; 64 G; 45 T; 0 other;
     tgtgaagtag ggaaaagaga tagcgatatc gtggcgagcg ccgagtgagc gaaggagggt        60
     atttaagcgg cgcgcgctgc tgggtcgaga ggtcagttga acgcgaaatg tcgaaggtga       120
     aggacgtgcg aattggagaa taaataaagt gaactaaacg aaagccaccc atcttcttct       180
     tttgatgttt aactgattct caca                                              204
//
ID   INVADER1_I  repbase;    DNA;    INV; 3186 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   19-SEP-2005 (Rel. 10.10, Last updated, Version 3)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; INVADER group;
KW   INVADER1_I; INVADER1_LTR; gag; integrase; protease;
KW   reverse transcriptase; GYPSY71-I_AG; internal portion.
XX
NM   INVADER1_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3186
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER1_I.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
DR   [1] (Consensus)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and
CC   RT:
CC   1 32       897      1495 1896 1966 2499      3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC   LTR          |        |        |      \             LTR
CC   |        |        |       \
CC   |        |        |        \
CC   |        |        |         \
CC   gag   protease  Integrase    RT
CC   (peptidase A2,
CC   or retropepsin)
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
FH   Key           Location/Qualifiers
FT   CDS           1039..2664
FT                 /product="INVADER1_I_1p"
FT                 /translation="MGNVVILRGLGSNTICSTLQILANVLISERSYEILFH
FT                 VVLDNYIKYDALIGRDILSQGVGVTITSKSLTMFNEKSILSVEVSEKNPDL
FT                 AHVDFLSRNPVPKIVKNSIGVVERHINLTEISDNWLLAEQQRDEETSSIIS
FT                 KLRNNELSEDLAKTYELRSGTMYRKIQRNGKTRCLPIIPKQFRWSAVNNVH
FT                 ESVMHLGWEKTLEKMYEFYWFDKMSKYVRQFVDNCITCRLSKPPSGKIQSE
FT                 LHPIPKIDIPWHTVHVDITGKLSGKSDQKEYIIVMIDAFTKFVYLSHTTKL
FT                 DTDSCIKAVRSVISLFGVPSRLIADQGRSFASSAFRDFCSAQKMDLHLIAA
FT                 GASRDNGQVERVMSTLKSMLTAVETGPGSWQDSLYEIQLALNSTPNRVTKV
FT                 SPLEILIGREARPFGLTPVVKEQNIVDVGLVREIAKRNMEKNAKIDKARFD
FT                 KNKATIVRHKLGDHVLLKNEERHQTKLDPKFKGPFVVAEVLPGDRYKLKAL
FT                 NNNRTYKYSHESLRCMPEKRITTVFEDEGTEDASDQASEGCDLEND"
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   INVADER1_LTR repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   INVADER1_LTR is a long terminal repeat from the INVADER1
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER1_I; INVADER1_LTR;
KW   Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-423
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER1_LTR.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
DR   [1] (Consensus)
XX
CC   INVADER1_LTR is a long terminal repeat from INVADER1 endogenous
CC   retrovirus; it flanks INVADER1_I internal sequence.
XX
SQ   Sequence 423 BP; 121 A; 81 C; 114 G; 107 T; 0 other;
     tgtcgcagat catttaaatg aaacgaaatt tcgtgtttct gcttggcacg cgccatgcag        60
     acgcctcttt ttatttttct gatgcgcggc agacaaccgt tagagtttct gccgaacgta       120
     gtctggtcgc gggtaggagc ggggggggaa gtagatgtct gtacgaaaac gagaagcata       180
     cagaaaaatg cggtgtgcat aagtattggt gtatgcggac tagaacaact gtcataattg       240
     tgttggtatt gcatgtaaag tcaagaacta cgcataattc tgattttgtg aagaagagat       300
     cagtcagtca gttttcgatc gttacgcata acagacatgc ctcgctcaag cgccagaaaa       360
     cgtcgcgcga accataacga gagtagtgaa gaggaagaag ggcatcctga tgactcttcg       420
     aca                                                                     423
//
ID   INVADER2_I  repbase;    DNA;    INV; 4592 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   INVADER2_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag;
KW   Gypsy superfamily; INVADER group; protease; integrase;
KW   internal portion; INVADER2_LTR; INVADER2_I.
XX
NM   INVADER2_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4592
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER2_I.";
RL   Direct Submission to Repbase Update (31-MAR-2000).
XX
DR   [1] (Consensus)
XX
CC   LTR of INVADER2 retrotransposon is listed in Repbase Update as
CC   INVADER2_LTR. INVADER2 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   99% identical LTRs.
CC   INVADER2 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER2_I encodes a 1474-aa polyprotein which is composed of
CC   gag,
CC   protease (peptidase A2), integrase and RT domains.
CC   INVADER2 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1 and INVADER3.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..4464
FT                 /product="INVADER2_I_1p"
FT                 /translation="MNISNASTAQLKGWLSEVKEPTTGTKRELILRLNNLT
FT                 NEKRNQLKLLLKSEEEDFDGSSNNNVQKGKRNNGKDGEHKDDESDSEAGDS
FT                 NEDGDEKSTVRNDKSNGEHDDKSGVRSYKNNSADGARNNNSGDGNSDENEV
FT                 CDSEDGDEDGGGEKSNKECGKNKRNTVGQAVQNMDLLLRMATEAVNEFSGD
FT                 TCARKWILQVKNIASVYGIKEPYIKMLIVSKIKGKACMWLHADPERVLLPT
FT                 EQLAAELISMFGERKSKLETRRKFEERKWTASESFVAYADDKVMLAHGINM
FT                 DKEELVALLIEGIPNQMLRNQARIQCFEDIQHIKKAFAEVKLPKVDEADKK
FT                 VASVNNNSSTLLRCFNCNSKGHWAKECRKPKREKGSCYACGEMGHFAAKCL
FT                 KNKNGDENNYVRYFEINFMNNAKSKFITACLIDTGSPISFIKISKVPKDVI
FT                 GVPVLSSFYGLNKSPLKTYGKILCYIMKNLNKIHFNLIMVANESMNHDVVL
FT                 GRDFMEACNLILNLDTLKMITVDKIESRCNKKSDKMLKEENMYNNNKTVSD
FT                 SVSQGSSKSQMSSDTVKNKLEKAVNAEISKVEREMFEINVIDDSIDYKIGD
FT                 QVDHSIKCQFIEFVENCYVNKERPNEPEIRCEIQLRLNDLKPFSCSPRRLA
FT                 YTEKEKLQIILDEYLKNGIIKPSDSEYASPMVLVKKKTGDLRLCVDYRKLN
FT                 KTMVKDNYPLPLIDDLLDRLVNKTIFSKLDLKHGYFHVFVNKESMKYTSFM
FT                 TPLGQFEFLRMPMGLKNAPAVFQRFINRIFEDMIRQDKVIIYMDDIMIASK
FT                 GIKEHMEVLREVFDRLTRNKLELRMDKCEFLQSSVQYLGFLITSKGIQAND
FT                 KGIEAIRDFPVPDKEHGVRSFLGLCSYFRRFIKGFSTIAKPLYDLLKKDKE
FT                 FSFEEKELECFETLKKKLVEAPVLGLYCYKDEIELHTDASAQGFGAVLLQK
FT                 KEDMKWHPIFYYSKATTKDEAKYHSFELETLAIVYALRRFRIYVQGKRFKI
FT                 VTDCNALSLALNKVELNPRIARWALELLEYDFEVVHKAGKHMQHVDALSRN
FT                 TNILVIETNTFEDNLIICQAKDEKLKDIRKKLEKTEDKIFEMRNGVLYRKA
FT                 NGGRLLFCVPEEMEEKILYKYHNELGHLGRDKVIDAIGKTYWFSNMKEKVV
FT                 RHIGNCLRCVAFSPKSGKEEGMLHSIPKGNVPFEIIHIDHYGPVDNGRIKK
FT                 HLFVIIDGFTKYVRLYATKTTNTKEVILALKDYFRSYSRPKFIVSDRGTCF
FT                 TSEDFAKFMGEYNIKHIKIATGSPQANGQVERVNRIVGPMIAKLTDIEKGL
FT                 HWDAVIEDVEFSLNNTKQRSVAQSPSKMLFGIEQKGKVVDELRQKLEELDN
FT                 VSEIRDLKEIRRKGSESQLKAQRDNEKRYNNKKKESTQYKVGDYIMVKNFD
FT                 STGGVARKLIPKHKGPYEIEKVLKNDRFLIKDVEGFQLARNPYQGVWSSQN
FT                 IKHWIGSRK"
XX
SQ   Sequence 4592 BP; 1799 A; 560 C; 1066 G; 1167 T; 0 other;
     atatcagaag tgggccgatc acgagccaaa gagaaaaaaa aaatgaatat aagcaatgca        60
     tcgacggcgc aattaaaagg atggttgagt gaagtaaaag aaccaaccac gggaacaaaa       120
     agagaattga ttttgcgttt gaataattta acaaacgaaa agcgaaatca attgaaatta       180
     ttattaaaaa gcgaggaaga agatttcgac ggaagcagca ataataatgt tcaaaaagga       240
     aaaagaaata acggaaaaga cggagagcat aaagacgacg aaagtgacag cgaagctgga       300
     gatagcaacg aagacggcga tgagaagagc actgtgcgca acgacaaaag taacggcgaa       360
     catgacgaca aaagcggggt acgcagttac aagaacaaca gtgcagacgg cgcccgcaac       420
     aacaacagcg gcgacgggaa tagcgacgaa aacgaagttt gcgacagcga agacggcgac       480
     gaagatggcg gcggtgagaa aagcaacaaa gaatgtggca agaataaacg aaatacagtg       540
     ggacaagctg tgcaaaatat ggatttatta ttgcgtatgg caaccgaggc agtaaatgaa       600
     ttttcgggag atacatgtgc gcgcaaatgg atcttacagg tgaaaaacat agccagcgtt       660
     tatggaataa aggaaccgta tataaagatg ttgattgtca gtaagataaa aggaaaagca       720
     tgcatgtggt tgcatgcaga tccagaacgt gtattgctac caacggagca gttggcggct       780
     gagctaatat caatgtttgg tgagaggaag tcgaagttag aaacaaggcg aaaatttgag       840
     gaacgaaagt ggacagcgag cgaaagcttt gttgcttatg cagacgataa ggtgatgctt       900
     gcacatggaa taaacatgga taaggaagaa ttggtggcgc tcctcattga aggtattccg       960
     aatcaaatgc tacgtaacca agcccgtatc caatgctttg aagatatcca gcacataaag      1020
     aaggcatttg cggaagtgaa actaccgaaa gtggatgaag cagacaagaa ggtggcatcg      1080
     gtgaacaata atagcagcac actcttgcgt tgtttcaatt gtaattcgaa gggacactgg      1140
     gccaaagagt gcaggaagcc aaagcgcgaa aaagggtcat gctatgcctg tggtgagatg      1200
     gggcactttg cagcaaagtg cctgaaaaac aagaatgggg atgaaaacaa ttacgtaaga      1260
     tattttgaaa ttaattttat gaacaatgct aaatcaaaat ttattacagc atgcctcata      1320
     gacacgggaa gccccatttc gttcataaaa attagtaaag tacccaaaga tgttattgga      1380
     gtaccagttt taagttcatt ttacggatta aacaaaagtc ccttgaaaac atatggaaaa      1440
     atattgtgtt acattatgaa aaatttgaat aaaatacact ttaatttaat aatggtggca      1500
     aacgagtcta tgaatcatga tgtagtattg ggaagagatt ttatggaagc atgtaattta      1560
     atcttgaatc tggacacctt gaaaatgatt acagtggata aaattgaaag tcgatgtaac      1620
     aagaaaagcg ataaaatgtt aaaggaagaa aatatgtaca acaataataa aacagttagc      1680
     gatagtgtta gtcaaggtag tagtaaaagt caaatgagta gtgacacggt taaaaataaa      1740
     ttagagaaag ctgtcaatgc tgaaataagc aaagtggaga gggaaatgtt tgaaattaat      1800
     gtaatagatg actcaattga ttacaaaata ggtgatcagg tggatcatag tataaaatgt      1860
     caatttattg agtttgtaga aaactgttat gttaataaag aaagaccgaa tgaaccggag      1920
     attcggtgtg aaatacaatt aagattaaat gacctgaaac cgtttagttg ttctcctaga      1980
     agattagcat atactgaaaa agaaaagctg cagattatct tagatgaata tctaaaaaac      2040
     ggaattatta aaccgagtga ttcagagtat gcatctccga tggtgttagt gaaaaagaaa      2100
     acaggagacc taagattatg tgttgattac agaaaactta acaaaacaat ggtcaaagat      2160
     aattatcctt taccattgat tgatgatctg ttggatagat tagtaaataa aacgatattc      2220
     tcgaagttag atcttaaaca tggatacttt catgtttttg ttaataagga atcaatgaaa      2280
     tatacatctt ttatgacgcc tttaggacag tttgaatttt taaggatgcc aatggggctg      2340
     aaaaatgcac cggcggtctt tcagagattt attaatagaa ttttcgagga tatgataagg      2400
     caggataaag ttattatata tatggatgac attatgatag ctagcaaagg aattaaggaa      2460
     catatggaag tacttaggga agtttttgac aggttgacga ggaacaaatt agagctgaga      2520
     atggataaat gtgagtttct gcaatcgagt gtacaatatt taggattttt aataacaagt      2580
     aagggaatac aggccaatga caagggaata gaagcaatta gagattttcc agtaccagat      2640
     aaggagcatg gtgtcagaag ctttttagga ttgtgttcat attttagaag atttattaag      2700
     ggtttttcaa cgattgcaaa acctttatat gacttattaa agaaagacaa agaattttcg      2760
     tttgaagaaa aagagttaga atgttttgag acacttaaga aaaagttagt ggaagctcca      2820
     gtgttagggt tatattgtta taaggatgaa atagagttac atacagatgc aagtgcacaa      2880
     ggttttggtg cagtgttatt gcaaaagaaa gaggatatga aatggcaccc tatattttat      2940
     tactcgaaag ccacaacaaa ggatgaggcc aaatatcata gttttgaact tgaaacattg      3000
     gccatcgtgt atgcattaag aagatttaga atctatgtac agggaaagag atttaaaatt      3060
     gttacggatt gcaacgcatt aagtctagcg ttaaataaag tagaattaaa ccctaggatt      3120
     gcgaggtggg cattagaact attagagtac gatttcgagg tagttcataa agcaggaaag      3180
     catatgcaac atgtggatgc attgagcaga aatacgaaca tattagtgat agaaactaat      3240
     acttttgaag ataatttaat tatttgtcaa gcaaaagatg aaaagttgaa agatattagg      3300
     aaaaagttag agaaaacgga agataaaatt tttgaaatga gaaatggtgt actttatagg      3360
     aaggcaaacg gtggaagatt gttgttttgt gtaccagaag aaatggaaga aaaaatttta      3420
     tataaatatc acaatgaatt aggtcactta gggagagata aggttataga tgctattggt      3480
     aagacttatt ggttttcgaa tatgaaagaa aaagttgtta ggcatatagg aaattgtttg      3540
     agatgtgtgg cattttcacc gaagtcggga aaagaagaag gaatgctgca tagcatccca      3600
     aagggaaatg tgccgtttga gataatacac atcgatcatt acggaccagt agataacggt      3660
     agaataaaga aacatctgtt tgtaataata gatggattca ctaaatatgt taggttatac      3720
     gcaacaaaaa caacgaacac aaaggaagtg attctagcgt taaaggatta ttttagatca      3780
     tatagcaggc cgaaatttat agtatcagat agggggacct gctttacatc cgaagatttt      3840
     gcaaaattta tgggagagta taatattaaa cacataaaga tagcgacagg ttcaccccag      3900
     gccaatggac aggtagaaag agtcaataga atagtagggc ctatgatagc taaattaaca      3960
     gacattgaaa agggattgca ttgggatgca gttattgaag acgtagaatt ttctctgaat      4020
     aataccaaac aaagaagtgt agcgcaatct cccagcaaga tgttgtttgg aattgaacaa      4080
     aagggaaaag ttgttgatga attaagacaa aaattagaag agttagataa tgttagtgaa      4140
     attagagact tgaaagaaat tagaagaaaa ggatcggaat cgcaattaaa agcacagagg      4200
     gataatgaaa aaagatataa taataagaaa aaagaaagta cgcagtacaa agtaggagat      4260
     tacattatgg ttaagaattt cgatagtaca ggaggagttg ctagaaagct aatacctaaa      4320
     cataagggtc catatgaaat agagaaggta ttgaaaaatg ataggttttt aattaaagat      4380
     gttgaaggtt ttcaattggc gcgaaatcca tatcaaggtg tctggagtag tcaaaatatt      4440
     aaacattgga tagggagtag aaagtaaatt tgtataatta aagataagaa aagtaaaaaa      4500
     aatgtaacaa atagcggcta agaacaatgt aatagttata agttggaaat ttcgacaaga      4560
     tcaggtgatc ttaaatgtca ggatggtcga at                                    4592
//
ID   INVADER2_LTR repbase;    DNA;    INV; 266 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   INVADER2_LTR is a long terminal repeat from the INVADER2
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER2_I; INVADER2_LTR;
KW   Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-266
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER2_LTR.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
DR   [1] (Consensus)
XX
CC   INVADER2_LTR is a long terminal repeat from INVADER2 endogenous
CC   retrovirus; it flanks INVADER2_I internal sequence.
XX
SQ   Sequence 266 BP; 89 A; 51 C; 56 G; 70 T; 0 other;
     tgtagtaggc tagaggtaca catacataag ttcagttcat aatagcaaca tagtatataa        60
     acattaagta cttgttcgct ttcgggtggc attctctctg tttcgcaaca tcggccctgt       120
     agcaacaagc atagaggcag atcgcaaacg gagagggagt cagtcgaatg ctaaagctga       180
     acacggaaag taacaaataa atcaaagagt ccaactcctg cctttgtgtg ttttagttaa       240
     ttaagaggat atataatacc cctaca                                            266
//
ID   INVADER3_I  repbase;    DNA;    INV; 4888 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   INVADER3_I is an internal portion of INVADER3 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag;
KW   Gypsy superfamily; INVADER group; protease; integrase;
KW   internal portion; INVADER3_LTR; INVADER3_I.
XX
NM   INVADER3_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4888
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER3_I.";
RL   Direct Submission to Repbase Update (31-MAR-2000).
XX
DR   [1] (Consensus)
XX
CC   LTR of INVADER3 retrotransposon is listed in Repbase Update as
CC   INVADER3_LTR. INVADER3 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER3 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER3_I encodes 1573-aa polyprotein which includes gag,
CC   protease
CC   (peptidase A2), integrase and RT domains.
CC   INVADER3 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1 and INVADER2.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..4744
FT                 /product="INVADER3_I_1p"
FT                 /translation="MPDTKWNQFSVPQLKKWLEALGCQTSGTKAELIVRLQ
FT                 AISPETRGDSPPNNGSAAEELEELDGDAAWPKQREPQGGDTRTIPFDEQSL
FT                 QSEPPENLDLDQLSLVDAERATLKELRDEIEANMAVLQRIQADIDDANKSK
FT                 SAHVRQINDVIENNSNGNHGNVNICANSTDANVNSTKVTIAADNIDTGHTS
FT                 FGKETAGSVVQHQSRNVNKLLESPATSLALAKEVTMEFDGSLCARNWVTQF
FT                 QNIGKIYNLDDGCMHMLLIAKLKGNAQRWLHASATRILESTDQLCEQLILT
FT                 FEIKMSKGELRSAFQKREWHPDEKFAVYFEDKVMLANDINIDLEELLENII
FT                 EGIPAPALRNQARIQRFSEPMQILRAFSEVRLPKHKTGSSSSKRLTGGGAA
FT                 NKDLRCANCNSKGHFARECLKPKREPGSCYGCGAFGHFVGQCPERKSANIN
FT                 NYVRLVKIFFHNNYKTPLITECLIDTGSPISFTKLSSVSKEINLESASGTY
FT                 FGLNKSQLTLHGKSLCYIIKEKVKCYFYLYVVPDESMSHNVVLGRNFMEAC
FT                 QLKLDPDALGRITVNPVDSKRYKKANSKTISSIVSETVSETVSETVSETVS
FT                 ETVSETVSETVSQMDNETVNKTISKTANEASSIVSQTVNEAGSKTVIETVM
FT                 PLANFTTDSGPYAAVVPSYEEAVREICSIEHLEDEQMNFICGENNNQALNS
FT                 QLKEIIKRNYLSVNKPTEPLVKCEIKLCLETSKPFSCAPRRLAYSEKEKLQ
FT                 KLLDDYLKEGIIQPSVSEYASPIVLVKKKTGDIRLCIDFRKLNKVLIKDNY
FT                 PIPLIDDLLDKLVNKKVFSKLDLRNGYFHVFVNKESVKYTSFVTPLGQFEF
FT                 LRMPMGLKTASAVFQRFVNKIFEDLIRDNKVIVYMDDIMIASKNSEEHLET
FT                 LKEVFIRLAQNKLELRMDKCEFLQTNIKYLGFIINGEGIRADDKGIDAIQH
FT                 FPVPDKIQAVQSFLGLCSYFRRFIKDFSTLAKPLYDLLRKDEKFKFGEKEM
FT                 SCFSTLKEKLVQAPVLAIYNFKDEIELHCDASALGFGAVLCQKKEDGKLHP
FT                 IFYFSKRTTVAEAKYHSFELETMAIIHALRRFRIYLYGKRFKIITDCNSLT
FT                 LTLNKTELNPRIARWALELQNYDYELIHREGKRMQHVDALSRCTNILIVES
FT                 NTFEDNLVICQGKDQKVQEIKKLLEKNEHKLFEMRNGIIYRKCNDGRLLFY
FT                 VPTDMEDHILYKYHNEIGHIGRDKMLDVISKSYWFPNAKDKCLSHIENCLK
FT                 CVAFSPKTGKEGFLHCIPKGSKPFELIHIDHYGPVDSGRSKKHIFVVIDGF
FT                 TKFVRLYATKTTNTKEVITALKDYFRAYSKPKCIISDRGSCFTSKEFDDFM
FT                 LEFDVKHMKIATGSPQANGQVERVNRSLGPMIAKLVQPEKGIYWDTVIDKV
FT                 EHVLNNTQHRSIKQTPSRVLFGLEQRGKIVDELKEKLEELENTEEDRDLVK
FT                 IRNEVENNQKKAQAYNKTHYDKTARQPSEYKKGDYVMVKNFDSTAGISRKL
FT                 IPKCKGPYVISKVLRNDRFLLKDVEGFQISRNPYQGVWSIQNIKHWIGNKK
FT                 NKRRHN"
XX
SQ   Sequence 4888 BP; 1743 A; 906 C; 1048 G; 1191 T; 0 other;
     acatcagaag tggtcattac ccactatgcc tgacactaaa tggaatcaat tctcagtgcc        60
     ccaactaaag aagtggttgg aagctcttgg atgccagact tccggcacaa aagcggaact       120
     aatagtgcgt ctgcaggcca tttccccaga aacgcgtggc gattcaccgc caaataacgg       180
     atcagcagca gaagagttgg aggaattgga tggagatgca gcctggccaa agcagagaga       240
     gccacagggt ggagacacac gcacgatccc gttcgacgag cagtcattgc agtcagaacc       300
     cccggagaac ctcgatctgg atcagctatc gttggtggat gcagagagag ccactctaaa       360
     agagcttcgg gacgagatag aggcaaacat ggctgtgctg cagaggatcc aagcggatat       420
     cgacgacgcg aacaagagca agtccgctca tgttcgccag atcaatgacg tcatcgagaa       480
     caacagcaac ggaaaccacg gcaatgttaa catatgcgct aacagcaccg acgccaatgt       540
     taacagcacc aaggtgacta tcgccgccga taacattgat acgggacata ccagttttgg       600
     aaaagaaacc gctggtagtg ttgttcagca ccagagtcga aatgtaaaca agcttctgga       660
     atctcctgca acatcgcttg ccttggcaaa agaggtaacg atggagtttg acggcagctt       720
     atgtgcgcgc aattgggtca cgcagtttca aaacatcgga aagatttaca atttggacga       780
     cggatgcatg cacatgctgc taattgccaa actaaaagga aacgcacagc gctggctgca       840
     cgcaagcgcc acacgcatcc tagaatcgac cgaccagcta tgcgaacagt taatcttgac       900
     attcgagatc aagatgtcaa aaggggaact gaggagcgca tttcaaaaac gcgaatggca       960
     tccggatgag aaatttgctg tttacttcga ggacaaggtg atgctggcca acgacatcaa      1020
     catcgatcta gaggagctcc tggaaaacat cattgaagga atcccagcac cagcgttgcg      1080
     caaccaggcg cgcatacagc gtttctccga gccgatgcaa attctgcggg ctttctcgga      1140
     agtccgtctg ccgaagcaca aaacagggag cagttcatca aagcgcctta ctggaggagg      1200
     tgcagccaat aaggacttac gttgtgccaa ttgcaactcc aaagggcact tcgccaggga      1260
     gtgtctcaag ccaaagaggg agcccggatc ctgctatggc tgtggggcat ttgggcactt      1320
     cgtcggacaa tgcccggagc gcaagagcgc caatatcaac aattatgtaa gacttgtcaa      1380
     gatttttttt cacaataact ataaaacccc attaattaca gaatgcctca tagacacagg      1440
     gagtccaata tcatttacaa agttaagcag tgtatccaaa gaaattaatt tagaatccgc      1500
     ttcaggaacc tatttcgggc tgaataaaag ccaactgaca ttacatggaa aaagcttatg      1560
     ttacattata aaagaaaaag ttaaatgtta tttttatttg tacgtggtcc cagacgagtc      1620
     tatgagtcat aatgtagttc ttggacgaaa tttcatggaa gcgtgccagt tgaaactgga      1680
     tccagacgcc ttgggaagga taacggtcaa cccagtcgat agtaaaagat ataaaaaagc      1740
     aaatagtaaa acaatcagtt ctattgttag tgaaacagtt agtgaaacag ttagtgaaac      1800
     agttagtgaa acagttagtg aaacagttag tgaaacagtt agtgaaacag ttagtcaaat      1860
     ggataatgaa acagttaata agacgattag taaaacagcc aacgaagcga gtagtatagt      1920
     tagtcaaact gttaacgaag caggtagcaa aacagtcatc gaaacagtta tgcctttagc      1980
     caacttcacg acggattccg gaccttatgc tgcggttgtg cccagttatg aagaagctgt      2040
     tagagaaatt tgtagcattg aacacttaga ggatgagcaa atgaacttca tatgcggcga      2100
     aaacaataac caagccttaa acagtcagtt aaaggagatt attaaacgca actacttaag      2160
     cgttaataag cctaccgagc ctttagtcaa atgcgaaata aaactttgtt tagaaacgtc      2220
     aaaaccattt agctgcgccc caagaagact tgcctactca gaaaaggaaa aattacaaaa      2280
     actattagat gactatttaa aagagggaat tattcaacct agtgtatcag aatatgcttc      2340
     accaattgtt ttagtcaaaa agaaaacagg agacatacgg ctatgtatag actttagaaa      2400
     actgaacaaa gttttaatta aagacaatta tccgataccg cttatcgatg accttctaga      2460
     caagctagtc aacaagaaag ttttttcgaa acttgattta agaaacggtt attttcacgt      2520
     attcgttaat aaggaatcag tcaaatacac ctcatttgtt acaccgttag ggcaattcga      2580
     attcctcaga atgccaatgg gcctaaaaac tgcatcggcg gtgttccaaa ggttcgtaaa      2640
     caaaattttc gaggatctta taagggataa caaagtaatt gtatacatgg acgacatcat      2700
     gattgctagc aagaactcgg aggagcattt agaaacttta aaggaagtgt ttatcagatt      2760
     agctcaaaat aaattggaat tacgaatgga taaatgtgag ttccttcaga caaatattaa      2820
     atatttagga ttcattataa atggtgaagg cattagggct gatgacaaag gaatagatgc      2880
     catacagcat tttccagttc cagacaaaat acaagccgtt caaagttttc tgggcttatg      2940
     ttcatacttc cgtagattta taaaagattt ctcaacatta gcgaaacctt tatatgacct      3000
     tttgagaaaa gatgaaaaat ttaaatttgg agaaaaggaa atgagctgtt tctcaactct      3060
     taaggaaaag ctggtgcaag caccggtctt agcaatttat aatttcaaag acgaaataga      3120
     actgcactgt gatgcaagcg ctcttggttt cggtgcggtg ttatgtcaaa aaaaagagga      3180
     tggaaaatta cacccaatat tttatttttc aaagcgaaca acagtcgctg aggcaaaata      3240
     tcacagtttc gaattggaaa caatggcaat tattcacgca ctgcgtagat ttagaatata      3300
     tttgtacgga aaacgcttta aaattataac tgattgtaat tctctcactt tgacgcttaa      3360
     caagactgaa cttaatccgc gaatagctag atgggcgtta gagctccaga actacgatta      3420
     tgagctcata catagagagg gtaaaaggat gcagcatgtt gatgctctta gtagatgcac      3480
     gaatattttg atagtggaat caaatacgtt tgaagacaat ttagtaatct gccaaggcaa      3540
     ggatcaaaaa gttcaagaaa tcaagaaact gctggaaaaa aatgaacaca agttgttcga      3600
     aatgagaaac ggaataattt atagaaaatg taacgacggc agacttttat tttatgttcc      3660
     cacagacatg gaagatcata ttctatataa atatcacaat gagatcggac acataggtag      3720
     agacaaaatg ttagatgtta tttctaaatc ttattggttt cccaatgcca aagacaaatg      3780
     tttgagccat atagaaaatt gtttaaaatg tgttgcgttc tctcctaaga caggcaagga      3840
     aggatttctg cactgcattc cgaagggcag caaaccgttt gaactaatac atatcgatca      3900
     ttacggccca gtcgactcag gcagatccaa aaaacatatt tttgttgtca tcgatggttt      3960
     tacgaagttc gtacgtttat acgccacaaa gaccactaat acaaaggaag tcattacagc      4020
     cctgaaggac tattttagag catacagcaa gcctaaatgc atcatttcag ataggggaag      4080
     ttgttttaca tccaaggaat ttgatgactt tatgttagag ttcgatgtta agcatatgaa      4140
     gattgcgact ggttcacccc aagcaaacgg acaggttgaa agagtcaaca gaagcctagg      4200
     tccaatgata gcgaaactgg tacaaccaga gaaaggcata tattgggaca cagtaataga      4260
     taaagttgag cacgtcttaa ataatacaca gcaccgcagc atcaaacaaa ctccaagcag      4320
     agttcttttt ggtttagagc aaagaggaaa aatagtagac gagttaaaag aaaaactaga      4380
     ggaattagaa aatactgaag aagataggga tttggtaaaa attagaaatg aagttgaaaa      4440
     taatcaaaaa aaggctcaag cgtataataa aacacattat gacaagaccg ccagacagcc      4500
     atcagaatac aaaaaaggag attatgtgat ggttaaaaat ttcgacagta cagcaggcat      4560
     ctctagaaaa ttgattccaa agtgtaaagg cccatatgtg atatctaaag tattaagaaa      4620
     cgacagattc ttgttaaaag acgtagaagg ttttcagata tctcgtaacc cataccaagg      4680
     tgtctggagc atccaaaata ttaagcattg gataggcaac aagaaaaata aacgaagaca      4740
     caattaaaca ataataataa tataataata ataataacag attaatattg tatgtacata      4800
     tgtataaata aggtaaaaga attcatcata caactaagca atcaatgtaa accatgatca      4860
     ggggatcagc tagtcaggat ggccgagt                                         4888
//
ID   INVADER3_LTR repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   INVADER3_LTR is a long terminal repeat from the INVADER3
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER3_I; INVADER3_LTR;
KW   Retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-298
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER3_LTR.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
DR   [1] (Consensus)
XX
CC   INVADER3_LTR is a long terminal repeat from INVADER3 endogenous
CC   retrovirus; it flanks INVADER3_I internal sequence.
XX
SQ   Sequence 298 BP; 99 A; 54 C; 72 G; 73 T; 0 other;
     tgtggtagga tgaacactca taaggcccac gaagcatacg aggaagcata cgaagaagca        60
     tacgatcata tccccgttag gaataagtat atcattgcta tctcgctctt acttataagc       120
     tagcattaag agataagaat gtacacctag ctcactctct cttttgaaag agcataagaa       180
     aagaggaata cgcgagacgc ggcattcggt ggcgtgagct tgaagtgaga agtcgaataa       240
     agagattgtg aagttattta aaggaaggag cacgtgtatt catttttcgg cgtccaca         298
//
ID   INVADER4_I  repbase;    DNA;    INV; 2413 BP.
XX
AC   .
XX
DT   24-JUL-2000 (Rel. 5.06, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   INVADER4_I is an internal portion of INVADER4 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; INVADER group;
KW   INVADER4_I; INVADER4_LTR; gag/DNA binding protein;
KW   internal portion.
XX
NM   INVADER4_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2413
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER4_I.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
DR   [1] (Consensus)
XX
CC   LTR of INVADER4 retrotransposon is listed in Repbase Update as
CC   INVADER4_LTR. INVADER4 has populated the D.melanogaster genome
CC   recently since its proviral copies are almost identical and
CC   flanked by identical or 1% divergent LTRs.
CC   It was transposed in a nonautonomous mode. It encodes only
CC   the gag-like DNA binding protein protein.
CC   INVADER4 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER4 belongs to the INVADER group of GYPSY-like retroviruses,
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1, INVADER2 and
CC   INVADER3. INVIDER4_I is ~60% identical to the INVIDER1_I and
CC   MICROPIA_I consensus sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           49..918
FT                 /product="INVADER4_I_1p"
FT                 /note="GAG/DNA binding protein"
FT                 /translation="MAALEAQNRNLMEIIRTMHAPRASASNEKSLHVTLPK
FT                 FCADSAGADPSAWCTTVDLIFADNALVGSALVIALSKALEGSASQWLSQIC
FT                 FAGITWPQFKELFIQRFVGMETSAAILMNVLNGRPTPGESFAQYGSRIVTL
FT                 LLSKWKAKDLEEIAVSVALAHMAQIDNNLLRWVFTTNVATRNELQQQLQAY
FT                 AFKKRNNEDDSGPEKKLRMQLQTMCHFCGKAGHKFAECRARKEGTSNTKGR
FT                 NYSESNTPGLKDRSNIKCFKCDEMGHVASVCPKGHNKYIEKRVDVCETK"
XX
SQ   Sequence 2413 BP; 766 A; 411 C; 601 G; 635 T; 0 other;
     tcagaagtgg gatcgccttc gccacaagag accagatctg atcagtatat ggctgcgttg        60
     gaggcacaaa accgtaacct catggaaata ataagaacca tgcacgcacc gagagcatcg       120
     gcgtcaaatg aaaagtcctt gcacgtcaca ctgccaaaat tctgcgctga cagcgctgga       180
     gcagatccat ctgcatggtg caccaccgtg gatttaatct ttgcagataa tgcgcttgta       240
     ggcagtgcac tcgtaatagc gttaagcaaa gcattagaag gcagtgcatc gcaatggctg       300
     tcgcagatat gcttcgctgg catcacgtgg ccgcagttta aagaactgtt catacagcga       360
     ttcgtaggaa tggagacgtc ggctgctatt ttgatgaacg ttttgaacgg acgtccaaca       420
     cctggagaga gctttgccca gtatggaagt cgcattgtca ccttgttgct gtctaagtgg       480
     aaggccaagg atttggagga gattgcggtt tcggtagcgt tggctcacat ggcacaaatc       540
     gataataatt tgttgcgttg ggtgtttacg actaatgtgg ctacgcgcaa tgagcttcag       600
     caacaactgc aagcttacgc cttcaagaaa cgtaacaacg aagatgattc tggcccagaa       660
     aaaaagttaa gaatgcagtt gcagaccatg tgccattttt gtgggaaagc tggccacaaa       720
     ttcgccgaat gccgtgctcg aaaggaaggt acatcaaaca caaaaggaag aaactacagc       780
     gaaagcaaca cgcctgggtt aaaagatcgt tcgaacataa aatgttttaa atgcgacgaa       840
     atgggacatg tggcgtctgt atgtcccaaa ggccacaaca aatacatcga aaagcgagtt       900
     gacgtgtgcg aaactaagtg agccaagtgg actgtgtttt tcaattgggt gagccctttc       960
     catttttttt tttgattcgg acgccgaatg ttctttaata aaattaaaat aaattaagta      1020
     acaaattaag agcttggttt cgttttattt attaaatcta ataaatttag tatgtacaaa      1080
     tccaaagtta tcaaagccgt tcaaaataat gcacatgaga atagtttgga aatactcttt      1140
     gacatcaata tagaagtaag cgataatgat aaatgtaaat taagaaatat attggaaaag      1200
     tatgccgata gtttcgtaac tggaatacca aataaggcgc attgaaaatt cgtttaagta      1260
     ataaaaataa aagtgttcaa gggcgcccat agcgactcag tttccattgc tacagatttt      1320
     ggatcaaata gatcgtttgc ggtgtggtaa atattttttt catttgtttt agacatggcc      1380
     agcggatttt ataaaatacc gattcatcca gattctatag aagagtcaag tatgtctttc      1440
     cttagagctc ccagtcgcat catagtggat caaggcagaa gctttgtcag caacaagttc      1500
     cgtgagcttt gttcaacaaa caggattgag ttgttttcaa tagctacaga tgccagcaga      1560
     gcaaatgggc aggttgaaaa caaatgagcg tccaagcaag gaaaacatgc gaaaggatgt      1620
     agagtagttc ggtatgaggt catgtgttaa gtgagaagta tcatcgagtg attaatgtac      1680
     tagatggtca tcgacacaat ttgaagtcgt tagttatcaa gcgaacatat aaatattcgc      1740
     atgaatgtaa tggtgactcc caacagagaa aagagttgaa ggatggcact agtgatcgtg      1800
     catctgtgtc ccaagagaga aaagagttta aagatggcac tagtgatcgt gcatctgtgt      1860
     cccaagaaag gaaacatttg gcgaactgtt atgaatagaa tggcgtgtga ccgcactata      1920
     acagctaact cgcagggacg agaagtgtta tggcgggggt caagtgatga tgactgcact      1980
     ataacagcta actcgcaggg acgagaagtg ttatggcggg gttcaagtga tgatgactgc      2040
     actataacag ctaactcgca gggacgagaa gtgttatggg gggggtcaag tgatgatgac      2100
     tgcactataa cagctaactc gcagggacga gaagtgttat ggccgggggt caagagattg      2160
     ggtgtgagag aagacacgcc aatgttatta tgagaaatta aagtcatgga aaatgtaaat      2220
     agtttgaagt tttgatatgt aaattggaga tgtctttgtt aaagaaaaat cagtcatgag      2280
     atgaattgtc aattaaataa ttactgatta ttacttgttg tcattaattg ttcttaagtt      2340
     gacgaagttg tgtgacttgg acttgattgg tggattaggc acacgaggga cgtgtgaaag      2400
     gtcaggaagg ccg                                                         2413
//
ID   INVADER4_LTR repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   21-JUL-2000 (Rel. 5.06, Created)
DT   21-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   INVADER4_LTR is a long terminal repeat from the INVADER4
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; INVADER group;
KW   INVADER4_I; INVADER4_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-346
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER4_LTR.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
DR   [1] (Consensus)
XX
CC   INVADER4_LTR is a long terminal repeat from INVADER4 endogenous
CC   retrovirus; it flanks INVADER4_I internal sequence.
CC   INVADER4_LTR copies are 99% identical to the consensus sequence.
XX
SQ   Sequence 346 BP; 98 A; 67 C; 93 G; 88 T; 0 other;
     tgtcggagcg cgactcttcg cattccagaa attccttctg tgatttcata ttctgatgaa        60
     attgtaatat tgcggtaaaa ttctgtcgag cgctgcggca gaggcacgaa cagcctctgc       120
     agctgagtga ggtccgatcg agtggtcata aatagtgtgt tagagagaga tgacaatgtg       180
     gcacacgcca gtgtgtatag ccattagaga atatgatgaa gaagggacat gtaagaagat       240
     cccttcagtg aagtttgact gctgacgtcg atcggaactt gctgcgctga cgcacaaaat       300
     cgcgaagtga ataaataata tggatgagac tcctgtttcg ccgaca                      346
//
ID   INVADER5_I  repbase;    DNA;    INV; 3334 BP.
XX
AC   .
XX
DT   17-APR-2001 (Rel. 6.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   INVADER5_I is an internal portion of INVADER5 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag;
KW   Gypsy superfamily; INVADER group; integrase; internal portion;
KW   INVADER5_I; INVADER5_LTR.
XX
NM   INVADER5_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3334
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER5_I.";
RL   Direct Submission to Repbase Update (31-MAR-2001).
XX
DR   [1] (Consensus)
XX
CC   LTR of INVADER5 retrotransposon is listed in Repbase Update as
CC   INVADER5_LTR. INVADER5 has populated the D.melanogaster genome
CC   several million years ago since its proviral copies are
CC   flanked by ~85% divergent LTRs (AE002743, insertion into
CC   PROTOP_B). There are only a few copies of INVADER5_I present
CC   in the D.melanogaster genome, therefore the consensus sequence
CC   is not complete. It encodes a Gypsy-like polyprotein corrupted
CC   by some deletions and stop-codons. INVADER5_I is 70% identical
CC   to INVADER1_I, and it is older than INVADER1-4.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..846
FT                 /product="INVADER5_I_1p"
FT                 /translation="MQRTQRVPNDAVAVVLPKFNPDRTGSDGASWCSTVDY
FT                 ILSENQLHGTFLVMAFSKALEGSVSHWLSQTCFPGITWMQFRELFLQNYAG
FT                 TETLAATVINLLDGRPKEGECLSLYGSRMVTSLVSRWKSLDVEQIAVSVVL
FT                 AHAAGFNKRLRRLAFTTDVNTRNDLHQELTAYSFDARQSQSSYGTTSAPSA
FT                 KRVKTFSSGKLGHKQAECRLKKEATQSHHSAGQRSGYTESKRRSTLTCFKS
FT                 GKVGHVASV"
XX
SQ   Sequence 3334 BP; 1002 A; 588 C; 750 G; 994 T; 0 other;
     tcagaagtgg gatcttccaa gcctcacaac tgtggagaca acctgcgaac actcttggag        60
     tcgcaaaatc acacctttgc ggaactctta caggctatgc agcgaacgca aagagtgcca       120
     aatgacgcag tagctgtagt gcttccaaaa tttaaccccg atcgcactgg ttcagacgga       180
     gcatcatggt gttcaacagt ggattatatt ctatctgaaa atcaactaca tggcaccttt       240
     ctcgttatgg ctttcagcaa ggcgctggag ggaagcgtgt ctcattggtt atcccaaaca       300
     tgctttccgg gaatcacatg gatgcagttt cgggagttgt ttttgcaaaa ttatgcagga       360
     actgagacat tggccgcaac agttataaat ctgctggatg gacgcccaaa agaaggagag       420
     tgcttatcgt tgtatgggag caggatggtt acttctctcg tgtccaggtg gaagtcactg       480
     gatgtggaac aaattgcagt ttcggttgtg ctggcgcatg cagctggttt taataagcga       540
     ttacggcgtc tagcttttac gacagatgtg aacactcgga acgatctgca tcaggaatta       600
     acagcctatt cttttgatgc ccgacaaagt caatcttcat atggtaccac gtcagcacca       660
     tcagcgaaaa gagtcaagac attctcttcc ggaaaacttg gtcataaaca ggcggagtgt       720
     cgtttaaaga aggaagcaac tcaaagccat cattctgctg gtcaacgttc tggctatact       780
     gaaagtaagc gccggtccac cttgacctgt tttaaatctg gaaaagttgg acatgtggcc       840
     agcgtgtgac cggatcgtga ggagcgtcaa tatatgcaca atactggagc ctgtggaaac       900
     gctgaagtcc agttcatctc cgtttgcgag tccaatacta catccaaatt caatcgagat       960
     aacagcattc gtgactccag agggacaata tgcatttttg gcaatgcctt ttcggtttaa      1020
     aaatgccact tctgttttct atgagcgata aattgtgctt taggtgatct taaccataaa      1080
     tacgtcattg tttatatgga cgatgtactt atagctgcca gcactaagga agaagctttc      1140
     gatagattac aggtagtttt gcaaacactt attactgtcg gattttcttt caatatgttc      1200
     aaatgctctt ttcttaaatc tcgtattgag tatttgggtt ttggagttga agcaggtgag      1260
     gtgcgtccaa atcctggaaa aatacatgct cttgttaatc tgccgcctcg caaactgtga      1320
     cacaattgag acagtttatt cggctagctt cgtactttcg cgagtttgtg cccaagttct      1380
     cgcaattgct aaaacccctt catgctttta catcaaaggc catatcattt gcatggaata      1440
     gagagcacga gcaaatacga aagaaagtag ttacaaaatt tgacttatga acctgttctt      1500
     ataatatttg attcacagtt tcctattgag cttcacacag atgccagtgc agacggctat      1560
     ggagctattt tgttacacaa aatagaaacc aagcctcgtg ttattgggta tttcagtaaa      1620
     cggatgtctc ccgcagaatc tccgttatca ttcatacgag ttggagacgt tggcgacatt      1680
     gtaaaattgt aattgtaatt gtaattcacc taaagcttcc catactaaag tcgagttgac      1740
     tcctagggtc catcgctggt agtcttacaa gcagaccttc gattttgatg tagaatatag      1800
     accaggtaca cgtatggctc acgtttagtt tcttttccga aatcgtatac ctgaatacct      1860
     gatatagttg aaaaacacat taatttgaca gagatatttg acaattggtt actagccgta      1920
     cagcaaaaag atggacagat attgtttcta agttgcgtaa taatgaactt agtgaggaat      1980
     tggctaaaaa atacgagttg cggtcaggaa tattatatcg aaagattcaa aggaacggga      2040
     aaaccccttg ccttcctatt ataccaaagt cgtttatgtt aataatgtac atacatgaag      2100
     ccattatgca tcttggttgg aagagaaccc ttaaaaaaat gtatgagtac tattggtttg      2160
     agaaaatgtc gaaatatgtt tgtaaatttg tagacaactg catcacttgt aggctgtcga      2220
     aactatcatc tggcaaaata ctaccattat ttggtgtcct tctcgtttag ttgctgatca      2280
     agagattttt gctctgctca aatttttgct cttgcaaatg gtcaggtgga gcgtgttatg      2340
     attaactgta gcttaaacag gccaggggtg ttggcaggac tctttggttg acgttcaatt      2400
     ggctcttaat tgcacgccca acatggtgaa taaagtaagc ccattagagt tactcattgg      2460
     taaagaagcg agaccatttg tacctgttgt ggaaaattaa ctacttttca tgtcctcgta      2520
     gtaagagcaa tggaaaaact taacatggaa aagataaaat tagatttgac agaaatgaag      2580
     taaaatgaag tcggggacta cgtactactt aagtatgaag agcgtcatca aacttaatta      2640
     gatgccaaat ttagaggtcc attcttggta gttgaaacat tacagggtga tcggtataaa      2700
     ctaaaagctt tgaataataa tcgcacatat aaatattccc atgaattttt acaaaaaatg      2760
     tctgagaccg ggattgccag aaagtttgaa gatgatcaag gtgatcataa agatggtcca      2820
     ggtcgagcca gtgagggctg cgacattgaa attgaataat aagataattt tcggatagta      2880
     cggctctctg cacatatggg tgcccaagtt atgtggttcg ccatttgtcg tagttgagtt      2940
     ggaatctcga aagtgatcgg aagtattaag ttactacttg gccggtataa tattaacttt      3000
     gtgctattta agttggccgg tttagtgata actgtgtgct atgtgtgttg gcaagttatg      3060
     ttgttgtgtg tgagctagaa aagcgaaata ttgactagta atggtttaaa tgaaatatag      3120
     ttattctaag aaagtgcagt atatcgaagt tgttttgatg ttgggttggt ggtaatcaca      3180
     gtcttatggc atagatataa agagaaatgt taagtaatta agagatgctt gttgatgttc      3240
     taaaaaggaa aggaaaacat agagaaaaaa aatgtatttt gagttatcta caaattgtaa      3300
     actcaagtgg acgtgtgtag gtcaggaagg ccgt                                  3334
//
ID   INVADER5_LTR repbase;    DNA;    INV; 352 BP.
XX
AC   .
XX
DT   17-APR-2001 (Rel. 6.03, Created)
DT   17-APR-2001 (Rel. 6.03, Last updated, Version 1)
XX
DE   INVADER5_LTR is a long terminal repeat from the INVADER5
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; INVADER group;
KW   INVADER5_I; INVADER5_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-352
RA   Kapitonov V.V. and Jurka J.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
DR   [1] (Consensus)
XX
CC   INVADER5_LTR is a long terminal repeat from INVADER5 endogenous
CC   retrovirus; it flanks INVADER5_I internal sequence.
CC   INVADER5_LTR copies are ~92% identical to the consensus sequence.
CC   There are ~10 copies of INVADER5_LTR in the genome.
XX
SQ   Sequence 352 BP; 101 A; 52 C; 92 G; 107 T; 0 other;
     tgtcgtatat tcctttttaa tttcaaatta taacgtacat tttatatttg ctaaaagctg        60
     ggcatattgt tttgtttggg tatttcttct gtattcataa agcgaggcag aaatagtttc       120
     tgtcaacgca gtctggcatg ggcatgaatg ggacggatag agtccggtaa aactcaccac       180
     agtgtgtctg tgtagtggtg tatgaaagag aatgagaaag ggaaacgctt ggttttggtc       240
     attcttggtg atgaaataaa gagggatagt catgccacgt gccagaaagc gtttcgttga       300
     ggaaacagag gaagactctt gtaacgagga gtctacagac cttggatcga ca               352
//
ID   INVADER6_I  repbase;    DNA;    INV; 4510 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   15-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   INVADER6_I is an internal portion of the INVADER6 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; INVADER group;
KW   internal portion; INVADER6_LTR; INVADER6_I.
XX
NM   INVADER6_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4510
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER6, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 17-16 (2002).
XX
RN   [2]
RP   1-4510
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (15-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   INVADER6 is a family of Gypsy-like endogenous retroviruses and
CC   it belongs to the INVADER group. INVADER6 is less than 70%
CC   identical to other Gypsy-like elements present in the sequenced
CC   portion of the D. melanogaster genome.
CC   INVADER6_I is an internal portion of the INVADER6 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as INVADER6_LTR.
CC   INVADER6_I is flanked by 6% divergent LTRs. Therefore,
CC   INVADER6 is expected to be younger than 1 Myr.
CC   The internal sequence in incomplete. Presumably, an active
CC   INVADER6_I encoded a long polyprotein composed of gag,
CC   protease, integrase and reverse transcriptase domains.
CC   The corresponding ORF present in the genomic copy of INVADER6_I
CC   is
CC   slightly damaged by deletions and stop codons.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(64..432,436..1275,1279..2436,2415..4175)
FT                 /product="INVADER6_I_1p"
FT                 /translation="MQHRNLLEIVNAVRGSQTTQVVVLPKFNPESAGSSAA
FT                 TWCSTVDLIVGENPLDGSALLMALTKSLEGSASNWLSQICFAGMTWSQFQE
FT                 MFLQQYEGNETPAATVFNVLNGRPNDGECLALYGSLITTLMAKWKSMTAEE
FT                 IAVSVALAHAANIDGRLQRTVFTTTVKTRNELQNELRAFSYGKRKDHPVPE
FT                 NSTSKRARLHPNVKCHFCGKIGHKIADCRSMKNNLKNQQGSSSSIGRLSDS
FT                 KPGSITCYRCGNQGHIASACPARQSLSNQTKADEKRVNVCHVVEPIGTLIS
FT                 SGESYPFYFDSGAECSLVRESVSTQLSGTRINNNVVLKGIGNNTVTSTLQI
FT                 LSNVTISGYCLEVLFHVILNDCINYNIIIGREILSQGFSATITIDKIELCK
FT                 TRSVQTLSASSSFSLENVNTELCGEDRKILVNLLNKFCDSFIDGFPKNRVT
FT                 TGELEVRLIDPIKTVHRRPYRLSIEEKQIVRNKVNELLLDNIIRPSSSPFA
FT                 SPVLLVKKKNGSDRLCVDYRELNTNTVAEKYPLPLISDQISRLRGASFFSC
FT                 LDMASGFHQIPIHANSIERTAFVTPDGQFEFLTMPFGLKNAPSVFQRAVMK
FT                 ALGELAHSYVIVYMDDIMIIAETKEEAFVGLRTVLKIISQAGFSFNIGKCS
FT                 FLKSCVEYLGFVVKEGEIRPNPSKIKALVALPPPQSVTQERQFIGLASYFR
FT                 QFVPKFSEIMKPLYRLTCKNKIFEWKLEHEQIRQKVTKLLTDEPVLVIFDP
FT                 RHPIKLHTDASMDGYGAILLHKIDNKRRVVEYYSKQTPVLQQTNSLTESRY
FT                 HSYELETLAVYNSMRHFRHYLHGRRFVVFTDCNSLKATRNKTELTPRVHRW
FT                 WAYMQSFDFDIEYRPGAKMAHVDFLSRNPLPAARVITGEEEKHVLLAKITD
FT                 NWLLAEQQKDSEISTIVVKIQNNELGESLAKSYELRSKMLFRKIQRNGKTR
FT                 CLPVVPRSFRWSVVNQVHEAVVHLGWEKTLDKIYEFYWFENMAKYVRKFVD
FT                 NCITXKLTKPPSGKLPIELHPIPKVEIPWHTIHIDITGKLSGKRDQKEYII
FT                 VLIDAFTKLVCLHHTVNINSESCIDALKASISVFGVPTRIIADQGKCFTGS
FT                 CFSEFCSMHKIQLHLIATGASRANGQVERVMSVLKRMLTAVESSHRSWQDA
FT                 LGEIQLAINCTTNRITKASPLELLIGKECRPFNMLPICEQVNKVDVNIIRN
FT                 IAKENIKKNALYEKTRFDKHKAKFDNFGVGDYVLLKNEERHQTKLDQKYKG
FT                 PFLVTEVLEGDRYILKSLTNKRTYKYPHEALRSMPTEEIPKELDLCDDQEN
FT                 VERDVRNPLVDSNVDENVETDVRNPLVDSNGDENVERDVRNPLVDANVSEK
FT                 LLSCLKTQVNERH"
XX
SQ   Sequence 4510 BP; 1435 A; 869 C; 971 G; 1234 T; 1 other;
     tcagaagtgg gatcgcctca gccccaagcc atcactgatg atcgcctgtc cacaatttta        60
     gaaatgcagc atcgtaatct attggaaatt gtaaatgccg tgaggggctc gcagactaca       120
     caagtagttg tactacccaa gttcaaccct gagtccgccg gttcaagtgc agccacttgg       180
     tgctctacag tggaccttat tgtaggagaa aatcctctgg atggcagtgc tttgctcatg       240
     gccttaacca aatcattgga gggcagtgct tctaattggc tgtcacaaat ttgtttcgcc       300
     ggaatgactt ggagccaatt ccaagaaatg ttccttcagc agtatgaagg caatgagacg       360
     ccagcagcaa cagtctttaa tgtattaaac gggcggccaa acgacggcga atgtcttgcg       420
     ctgtatggta gctgattaat aacaacactt atggcaaaat ggaagtctat gaccgcagaa       480
     gaaattgcag tgtctgttgc cctggcacat gctgcaaata tagatggtag gctgcaacgc       540
     actgtgttca caactactgt caaaacacgc aacgagttgc agaacgagct aagagcgttt       600
     tcgtatggca agaggaagga ccatcccgtt ccagaaaatt ctaccagcaa acgagctcgc       660
     ctacacccaa atgttaagtg ccacttttgt ggaaaaattg gccacaagat agctgactgc       720
     cgctccatga aaaacaactt aaagaatcaa caaggatcta gttcgagtat tgggcgctta       780
     tctgactcta aacctgggtc aattacttgc tatagatgtg gaaaccaggg gcatatagcg       840
     tcagcttgcc ctgcaagaca atcgttgtca aaccaaacta aagccgacga gaagcgtgtc       900
     aacgtgtgtc acgtagtcga gccaattggg acattgatat catctggtga gtcgtatcca       960
     ttttatttcg actctggagc cgaatgctca cttgtaagag aatctgtgtc cacccaactc      1020
     tcgggcacac gaattaacaa caatgtagtt ttaaagggta tcggaaataa tactgttacc      1080
     agtacattac aaattttgtc aaacgtaaca ataagtggtt actgtctcga agtgcttttt      1140
     cacgtaattc ttaatgattg cattaattat aatattataa ttggacgcga aattttaagt      1200
     cagggattta gtgctactat aacaatagat aaaatagagt tatgtaaaac aaggtctgtg      1260
     caaaccctat ctgcttagag tagtagtttt agtcttgaaa atgttaatac cgaattgtgt      1320
     ggcgaggata ggaaaatctt ggtaaatctt ttgaataaat tctgtgactc atttatagac      1380
     ggttttccca aaaatcgtgt tacaactggc gaactagaag tacgcttaat tgatccaata      1440
     aaaactgtac acagacgacc gtaccgactt agtatagagg aaaaacaaat tgtccgaaac      1500
     aaggttaatg agctgctgtt agataacatc atccgtccta gcagctcacc gttcgccagt      1560
     ccagttttac tcgttaaaaa gaaaaatggt tctgatcgcc tttgcgtgga ttaccgcgaa      1620
     ctaaatacaa acacagttgc agagaaatat cccttaccac taattagtga ccaaatatct      1680
     aggttgcgtg gagcaagttt ctttagttgc ttggatatgg ccagcgggtt tcatcagata      1740
     cctattcacg caaattcaat tgagcgcacg gcttttgtga cacctgacgg ccaattcgaa      1800
     tttctaacta tgcccttcgg gttaaagaat gccccatccg tgttccagcg tgcagttatg      1860
     aaagctttgg gtgagcttgc ccactcttac gttatcgttt atatggacga tataatgatt      1920
     atcgcagaaa caaaagaaga agcttttgta gggttaagga cagttttgaa aataatatcg      1980
     caggctgggt tttcttttaa tatcggaaaa tgttcattcc tgaaatcttg cgttgaatat      2040
     ctggggtttg tggtaaaaga gggcgaaata agaccaaatc catctaagat aaaagcatta      2100
     gtcgctttac cgcctccaca gtctgttacc caagaaagac aatttattgg cctagcctct      2160
     tattttaggc agtttgtgcc aaagttttca gaaatcatga aacccttata tagactgacc      2220
     tgcaaaaaca aaatatttga atggaaactt gaacacgaac aaattcgtca aaaagtcact      2280
     aaattgctta cagatgagcc cgtccttgtt atcttcgatc ctcggcatcc cattaaactg      2340
     catacagatg ccagtatgga tggctacgga gcaattctac tccacaaaat agataataaa      2400
     cgtcgtgtag ttgagtatta cagcaaacaa actccttgac ggaatctcga tatcattcgt      2460
     acgagcttga aactttagct gtgtataact ccatgagaca ctttcgtcac tatttacatg      2520
     ggcgacgatt tgttgttttt acagactgta attccctaaa agctactcgc aacaagactg      2580
     aactaacgcc gagagtacac cgttggtggg catatatgca gtccttcgac tttgacatag      2640
     aatatagacc tggtgccaaa atggcacatg ttgatttctt gtcacgcaat ccactgccag      2700
     ctgctcgggt tattactggt gaggaagaaa aacatgttct attggccaaa ataacggaca      2760
     actggttact tgcagaacag caaaaggatt cagagatttc cacgattgtt gttaaaatac      2820
     agaacaatga attgggtgag agcttggcaa aaagttatga attacgctcg aaaatgcttt      2880
     ttcgcaaaat tcaaaggaac ggtaaaactc gttgcctgcc agttgtcccc agatcattca      2940
     gatggtcagt agtgaaccag gtccatgaag cagttgtaca tcttgggtgg gaaaagactt      3000
     tagacaaaat atacgaattt tactggtttg agaacatggc caaatatgtt cgtaagttcg      3060
     ttgataattg cattacgwgt aagttaacta agcctccgtc aggaaaattg ccaatcgaac      3120
     tccaccccat accaaaagta gaaattccat ggcacacgat ccatatagat attacgggaa      3180
     aattaagcgg caagagggat caaaaggaat atattatcgt tctgattgac gcgtttacaa      3240
     agttagtttg tttgcaccac acggtaaaca ttaatagtga gagttgtata gacgccttga      3300
     aggcgtcaat ctccgtattc ggtgtaccaa cacgaatcat tgcagatcag ggtaaatgct      3360
     ttacaggctc ttgtttcagt gaattctgtt ccatgcacaa aattcaacta cacttaattg      3420
     caacaggggc tagtcgtgcc aatggacagg tagaacgcgt tatgagtgtg cttaaacgca      3480
     tgcttacggc tgtagagagc agccatcgtt cttggcaaga tgccttagga gagatacaac      3540
     tagctataaa ttgtactaca aatcgcataa cgaaagccag tcctcttgaa ttactaatcg      3600
     gaaaagaatg tagaccattt aatatgttac caatatgtga acaagttaat aaagtcgatg      3660
     taaatattat aagaaatatc gcgaaagaaa atattaagaa gaacgccttg tatgaaaaaa      3720
     ctagattcga taagcacaaa gccaaatttg ataactttgg tgttggcgat tatgttttac      3780
     ttaagaacga agaaaggcac caaacaaaat tagaccaaaa atataaagga cctttcctcg      3840
     tgacagaggt acttgaggga gatcgttata ttttaaaatc tttaactaat aagcggactt      3900
     ataagtaccc acatgaagct ttgcgcagta tgccaacaga ggagatcccc aaagagttag      3960
     atctatgtga cgatcaagaa aacgttgaaa gagacgttag aaatcccttg gtggattcca      4020
     atgtggatga aaacgttgaa acagacgtta gaaatccctt ggtggattcc aatggggatg      4080
     aaaacgttga aagagacgtt agaaatccgt tggtggatgc caatgtgagc gaaaagttac      4140
     tgagttgttt gaagactcaa gtgaatgaga ggcattgatg gatttcaatg cgagattggg      4200
     gacacatgca acgtcgccaa gttgccagtg ctagaaggta cacgtgttac tgtgttgact      4260
     tatttgatgt ctggtgactg gcggcgtggc gggttgaatt gtcctagtgt gttgctaata      4320
     ataacaaacg atcttcttgg tacttctgtc actcgagttg gtcgataaca agaaaaataa      4380
     aattaaaaaa aataaaaaga gaacctttac taatactctg aattacgttt aatgttatct      4440
     ttctagatta agcttgttta atttcaaaac ttatattaca cacgaggacg tgtgctggtc      4500
     aggaaggccg                                                             4510
//
ID   INVADER6_LTR repbase;    DNA;    INV; 393 BP.
XX
AC   NT_033778;
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   INVADER6_LTR is a long terminal repeat of the INVADER6 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; INVADER group; INVADER6_I; INVADER6_LTR;
KW   endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-393
RA   Kapitonov V.V. and Jurka J.;
RT   "INVADER6, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 18-17 (2002).
XX
DR   Genbank; NT_033778; Positions 1483681 1484073.
XX
CC   INVADER6_LTR is a long terminal repeat of the INVADER6 endogenous
CC   retrovirus. The internal portion of INVADER6 is listed in Repbase
CC   as INVADER6_I.
XX
SQ   Sequence 393 BP; 93 A; 81 C; 95 G; 124 T; 0 other;
     tgtcgcatca ttattagtct tatttttatt ttctatgttc catctctaat aaacatgtca        60
     tctctattaa ataaaattcg tatcgagctg ttcttgtctt cgtttctctt tgatcgctgt       120
     tcgctgtgtt ccgttatgcg agtttaacgg gttttgctct gttctacata gtctcggttc       180
     gacgatgcgt tagagtgaga caaatgcttg tcctgtggtg agttcggacc agcatgtatc       240
     aagcgagata gagcgatgtt gaaatgtaca cggggcactt atgtttgaaa actctgagaa       300
     agcggacgcg tgaatatgtc gcaaccgagg aagtgtacga ctcgcgggcg gagcgcggca       360
     acagaggacc ccgaatcagt taacttcccg aca                                    393
//
ID   IS3EU-1_TC  repbase;    DNA;    INV; 3984 BP.
XX
AC   .
XX
DT   26-JUN-2012 (Rel. 19.09, Created)
DT   26-JUN-2012 (Rel. 19.09, Last updated, Version 1)
XX
DE   IS3EU-1_TC autonomous DNA transposon - consensus.
XX
KW   IS3EU; DNA transposon; Transposable Element; IS3EU-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3984
RA   Kapitonov V.V., Bao W. and Jurka J.;
RT   ""Simple" DNA transposons: scratching the surface.";
RL   Direct Submission to Repbase Update (26-JUN-2012).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3637..2411
FT                 /product="IS3EU-1_TC2p"
FT                 /translation="ILSRNEYESYCANIAIGNPYEERLTNERVIDENECYN
FT                 VEEFLVLPTPSENTASDFLLALELQQVEDANNSILPIEKNSVSDGSIAKLT
FT                 LHRGHIFEELIDIYTSLDISTQIDIQIVLPNGNEEAAVDFGGVFRDALSEF
FT                 WTTMYEKCTQGTTVRIPVLRHDFGDKKWTAIAKIFLKGWLTEKYFPIKLST
FT                 VFIENSLFKKTITPIEDEFMKYVSEEEKEVFTEALHNFGTVDFEQLLDLLD
FT                 QYGSRWKPSEENFSQLLKEIAHKELVQKPTFVVNCFHSVISNKITQEQLAE
FT                 IYNKSKPTSKNILPILKFEDVTSIEKEKVMGYLKKYIRDSDENYRTSFLRF
FT                 CTGADMIVGHEIKVSFSNVSGLKRLPVGHTCSYTLELPFDYQDYTEFRSEF
FT                 NSVLSSNIWIMGLI*"
FT   CDS           join(387..1130,1871..2200)
FT                 /product="IS3EU-1_TC1p"
FT                 /translation="MEVDSLLKFYFRLGLRHAEILSFLVLRHGVFISESTL
FT                 KRALRRLQLFRRKRYSRLQNVLVFLQEEIQKSGQLHGYRWMHLRCLQKGFI
FT                 VRQETVRFILQIIDPVGVEYRRRKRLRRRQYFNKGPNFLWHVDSYDKLKPY
FT                 GIAINGCIDGFSRSIMWLEAGSTSNDPRVIAGYFLKTVYRCGGCPRTVRTD
FT                 MGTENYYLEQIQLFFKRLEDDEHAPPAFIYGASTANQKIECWWSILRRHNA
FT                 QFWMIYLDELDEICLEWNSHSITSSRNSINPTGRPFVMYNMPELYESSDYL
FT                 LQVPDDEIEVVKNECTFLDKGMPCDKDIFELCNVLIEEGHLEKPSDPYNAV
FT                 NLYVYLRTQILNLL*"
XX
SQ   Sequence 3984 BP; 1308 A; 666 C; 680 G; 1330 T; 0 other;
     tacgaaagcg ctgaagggtc acacacaaaa aaatttttag actaaattgc cagttagtaa        60
     gtcggaattg cgagatacta agtcggaact gcgagatact aagtcggaat tgccagttag       120
     taagtcggaa ttgcgagata ctaagtcgga attgccagtt agtaagtcag aattgccaga       180
     tactaagtcg gaattgcgag atactaagtc ggaattgcca gttagtaggt ggcaatgtac       240
     agatagtaat tatcaatcaa taataagaat agataacagt ccatttacag tttcgttgtg       300
     ggatggttta cagtgcgatt aaacatacta agttgtttaa cttgtagaaa gtgcaagttg       360
     ttatctagtt tccatagctt tagagtatgg aagttgattc tttacttaaa ttttattttc       420
     gtttgggttt acggcatgct gaaatcttat ctttcctggt tcttcgacac ggagtgttta       480
     taagtgaaag cactttaaaa agagctttga gaagactaca actatttcga agaaaaaggt       540
     attcacgtct gcaaaatgtt ctggtattct tacaagaaga aattcaaaaa tctggacaat       600
     tgcatggata tagatggatg cacttgagat gccttcaaaa aggttttata gtacgtcaag       660
     aaacagtacg cttcatactt cagataattg atcctgttgg agttgagtat agaagaagaa       720
     aaaggttacg gcgaagacaa tatttcaata aaggacccaa ttttctttgg catgtagatt       780
     cctatgataa gcttaaacca tatggtattg caataaatgg ttgcatagat ggattttcta       840
     gatccataat gtggcttgag gctggaagta caagcaatga tcctcgagtt attgctggct       900
     actttttaaa aacagtgtat cgttgtggag gatgcccacg tactgttcgt actgatatgg       960
     gtacagaaaa ttattatcta gaacaaattc aacttttctt taagcgtctt gaagatgatg      1020
     aacatgctcc accagctttc atatatggag ctagtacagc aaatcaaaaa attgaatgtt      1080
     ggtggtctat cctacgcaga cataatgctc aattttggat gatttattta gtaaactaaa      1140
     ggagacggat attttgcaga catttcttga caagtctcta attcagtttg tttcatggat      1200
     ataattcgag taagtaaatt tctaatttgc aaattaatta gtacagtaat attagctgtt      1260
     tcaaaattat gtaaatgtca acgtggcatt ttctctcaaa attggttgtt ataaattatt      1320
     tatgcacttc aaaaaattaa tagctaatgt aatcaatagt ttcaatgaga gatctaatta      1380
     tttataccta ttttacattt ttatcaacca tatttaaaaa aataattcag tataatgcga      1440
     cgttggggtt tttatagttt tgaaacagct aatagttaca tattagtttc atcacaaatc      1500
     cttggttttt ataagtgtta tacaggatta ttcatcagta attaaagatc ctatgacgtc      1560
     gctctatgat gacgtctgac agtagtagat tcaagttgat atctattttt tacttaacat      1620
     ctatcaaaac taatgtccat tcaaatgccg agaaagttaa tccacaatta taactgtggt      1680
     ttttatttta ctgaatatag cataacacag aacattatta attggcggac aaaagtcttc      1740
     atacatgaaa tcaaaattga ggttattttt atacagccat tttacacatt tatgtcatca      1800
     tcatgacatt gatgtatgaa gacttttgta aatgtgtaaa atgtaaattc aatattttta      1860
     aacattgcag gatgaactgg acgaaatatg cttagaatgg aactcacatt caatcacaag      1920
     ttctaggaac agtataaatc caacaggtag accctttgtg atgtataata tgccagaact      1980
     gtatgaatct tctgattacc tattacaagt gccagatgat gaaatagaag ttgtgaaaaa      2040
     tgagtgtaca tttttggaca aaggaatgcc ttgtgataaa gacatttttg aactgtgtaa      2100
     tgtactaata gaagaagggc acttagaaaa accttctgat ccatacaatg cagttaatct      2160
     gtacgtatat ctccgaactc aaatattaaa cttattataa tgtaaattat taataaacta      2220
     tgttaaagta aacacgacgc aagtgattaa tttttatctg ttaaatgtaa acaaaaaaat      2280
     tatactacaa aaaataaata aagtttaata gaaaataaag gttaatatac aacttaacaa      2340
     aagttcaatt ctggaaatat aaaaacgtaa cattaatttt aggaacatat ccttaacagg      2400
     tggtacttaa ttagatcaag cccattatcc aaatatttga acttaacacg gaattaaatt      2460
     cggatctaaa ttctgtgtag tcttgatagt cgaagggtag ttctaatgta taagaacatg      2520
     tatgtccaac tggcagtctc tttaatcctg atacattaga aaagctaacc ttgatttcat      2580
     gacccacaat catatccgca ccggtacaaa aacgtagaaa agacgttcgg tagttttcgt      2640
     ctgaatctcg aatatacttt ttcaaatagc ccatcacctt ctctttttcg atggaagtca      2700
     catcctcaaa tttcaaaata ggtagaatgt ttttcgaagt gggttttgac ttattataga      2760
     tctcagcaag ttgttcttgg gttattttat tgctaataac ggaatgaaaa caatttacaa      2820
     caaaagtagg tttctgtaca agctccttgt gggcaatttc ctttaagagt tgagaaaaat      2880
     tttcttctga tggtttccat ctgcttccgt attgatctaa aagatctaaa agttgttcaa      2940
     aatccactgt accaaaatta tgcagtgctt cagtaaaaac ttctttttct tcctcactga      3000
     catatttcat aaattcgtct tcgataggag ttatggtctt tttaaatagt gaattttcga      3060
     taaatacagt ggaaagtttg atcggaaaat acttttcggt taaccaacct ttcaaaaata      3120
     tttttgcaat agctgtccat tttttatctc cgaagtcatg tctcaaaaca ggaatacgca      3180
     ctgttgtacc ttgtgtacat ttttcgtaca ttgtggtcca aaactcactc aatgcgtccc      3240
     taaatactcc accaaaatct acagccgctt cttcgttgcc attcggcaac acaatttgta      3300
     tgtcaatttg agtactgatg tctaatgatg tataaatatc aattaactcc tcaaagatat      3360
     ggccacgatg caaagttaat ttagcgatac ttccatctga gacactgttc ttttcaatgg      3420
     gaagaattga gttgttggca tcttcgacct gctgaagctc tagtgccaac aaaaaatctg      3480
     atgcagtatt ctcacttgga gttggcaaaa ccagaaattc ttcgacgttg taacattcgt      3540
     tttcatctat gacacgttca tttgttaatc gctcctcgta agggttccct attgcaatat      3600
     ttgcacaata cgattcatat tcattccgac ttagtatctc gcaattccga cttagtatct      3660
     ggcaattctg acttactaac tggcaattcc gacttagtat ctcgcaattc cgacttagta      3720
     tctggcaatt ctgacttact aactggcaat tccgacttag tatctcacaa ttccgactta      3780
     gtatctggca attccgactt actaactggc aattccgact tagtatctcg caattccgac      3840
     ttagtatctg gcaattccga cttactaact ggcaattccg acttactatc tcgcaattcc      3900
     gacttagtat ctcgcaattc cgacttacta actggcaatt tagtctaaaa aattttttgt      3960
     gtgtgacctt tcagcgcttt cgta                                             3984
//
ID   IS4EU-1_AA  repbase;    DNA;    INV; 4318 BP.
XX
AC   .
XX
DT   29-APR-2007 (Rel. 12.04, Created)
DT   01-MAY-2007 (Rel. 12.04, Last updated, Version 1)
XX
DE   A family of autonomous IS4EU transposons - a consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; IS4EU;
KW   Interspersed repeat; IS4EU-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4318
RA   Kapitonov V.V. and Jurka J.;
RT   "IS4EU, a novel superfamily of eukaryotic DNA transposons.";
RL   Repbase Reports 7(4), 143-143 (2007).
XX
DR   [1] (Consensus)
XX
CC   DNA transposons from the IS4EU superfamily are characterized by
CC   the TA target site duplications. These transposons are wide
CC   spread in metazoans, including fish, frogs, lancelet, sea
CC   urchins, sea squirts, insects and cnidarians. Autonomous IS4EU
CC   transposons encode two proteins: the IS4EU-TR transposase, which
CC   is similar to the IS4-like bacterial transposases, and the
CC   ISEU-EX DNA exonuclease (lambda-like exonuclease). Based on the
CC   conservation of both proteins in highly divergent transposons, is
CC   is clear that they are necessary for transpositions.
CC   IS4EU-1_AA is a consensus sequence of a young family of
CC   autonomous IS4EU transposons that were active in the mosquito
CC   genome in a last few million years. The IS4EU-1_AA transposon is
CC   characterized by 15-bp imperfect terminal inverted repeats, TA
CC   target site duplications, and it encodes two proteins: (i) the
CC   430-aa transposase, IS4EU-1_AA1p, composed of the THAP
CC   DNA-binding N-terminal domain and catalytic "DDE" domain, which
CC   is conserved in all IS4EU transposases, and (ii) the 519-aa
CC   IS4EU-1_AA2p exonuclease. Questions and comments send to Vladimir
CC   Kapitonov.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(360..705,976..1919)
FT                 /product="IS4EU-1_AA1p"
FT                 /note="IS4EU-TR transposase."
FT                 /translation="MKISCVFRTQDMKMSATKLRDFSTTCQEESQTFVGTT
FT                 EEQKRSEPGAGVSVNRTVCCVPGCNQRYSPGVSFHAFPLKSDEERYRIWTK
FT                 QLRLKYEPTKTARVCSNHFSIRNFIPPFDAGIQVDTTDIDKRQIKRSCAIS
FT                 FGEDEDDMAAWTGLRSKDMLQSIVNAVMILKEFKKRKHSSVTIDEEILIVL
FT                 VKLKTNLSFRCISVLFRIHAQTVSVCFYRTVPLLSAALKPLIYWPTSEQIS
FT                 KNIPHYFRPDFEDVVVVLDCTEMPIMKPKCLHCRINTYSHYKSRETAKYLI
FT                 GVTPGGTISYVSCGYGGKSSDKQIVVEEKVLDLLTPGQAVMTDKGFMIDEE
FT                 CKRRNVKLVRPPFLNGPQKQLSKFEATQNVSIAAARVHVERAIQRVRIFSF
FT                 FNTKIDSRFLSVLDDLLLISCAIVNISSPIIANTRF"
FT   CDS           join(4195..4193,3904..3579,3334..3057,3000..2051)
FT                 /product="IS4EU-1_AA2p"
FT                 /note="IS4EU-EX lambda-like exonuclease."
FT                 /translation="MESNHEIDTCEVPVQLSEVFHFAAGGSRLVQEGERVF
FT                 NAAHLLIVGAEQVHQDGVSIFATCLQSSSPSSEPHVIKIRTKQAFPQWTFT
FT                 CTCKAGKGKCKHQMAVLYHLLRCATVLILTVTDLKQKWGKIAAKTATDLYK
FT                 ATRLMDLCASMKSVENLSDSTTIEHSLNESTIEESNERSKSSKYRQYTATG
FT                 EERSQILHHFVSCFPNSALGYEICGRPSIQAETMNHESEIENCVLQMEIST
FT                 SKLSLSSSNSIISFQDFSPESIVKRYVEKLFEPEFDLKYKYFIGPLEANLL
FT                 TFYEIKICVSAKESTDICMRTISQNSEECKEERSMRITASNAYSLFTYYVT
FT                 EEKKSKDWKRKIVKLMFPENLKTPAIDHGRRCEHKAIESYEIMTGVSVNRC
FT                 GFVIPPHIPWIGCSPDGIIVEERKINKVKFPFAGKTSTISEVLKDLPYLSK
FT                 SNQLRKRHIYYGQVQINMFVLKCEKADFIIYSEFEDRCYVISVDLDEEYVY
FT                 GLLDTLKEVYFNIYLKILYTLKN"
XX
SQ   Sequence 4318 BP; 1324 A; 825 C; 804 G; 1365 T; 0 other;
     ttcgattcta cgaaggtacg gtgtcgccac ctacgtcagt ttcgtctgtg cgtgaacaaa        60
     aggtaaacaa acattgttga tttcaacgca tttttcgttt gcaaagttct acgtaaattt       120
     tactgaacct gttggttttt acaattggaa tccattcatc aattagtaaa gtcatcaaac       180
     gtgctatata acccaggtta gtttagtgaa tgatgtgtta aaatccatct ctaagtgagc       240
     tcctccaaac accgtagaaa agtgtagcgc ataaatttaa cgatttttga atgaaaatca       300
     ctgttttgtg ctttaattat ttgcgcactc agtcgcaata accctagaaa tatcaaaaaa       360
     tgaaaatttc ttgtgttttt cgtactcagg atatgaaaat gagtgccaca aagttgcgag       420
     acttttcaac aacctgccaa gaagaaagtc aaacattcgt tggtacaact gaagagcaga       480
     agcgaagcga gcctggtgca ggagtatcag ttaaccgaac agtgtgctgt gttccggggt       540
     gcaatcagcg gtacagtcct ggagtttcgt ttcatgcatt tcctctaaag agtgacgaag       600
     aacggtaccg gatttggaca aagcaactgc ggttgaaata cgaaccgacg aagactgctc       660
     gagtgtgcag caaccacttt agcatccgga attttatacc accatgtaag tgcagaaatg       720
     tttagcctta tcaataatat gttcacgaaa attttaattt ttagcaaaaa aaaacgacaa       780
     accgagcgtc taatactacg agcatcagca gttcctgatt caaatctacc cggttgtgct       840
     gccaaagaag cactgaaaaa aaatcgtgct gaaatcgatc gcttcttaaa gaacgttgta       900
     tttcgaatag acccagcagc aaactgggtc aggaagaagt atttcaacct gcagagacat       960
     tcccaccctc actagttgat gctggtatac aagtggatac tactgacatt gataaaagac      1020
     aaatcaagcg gtcttgtgcg atctcttttg gtgaggatga agatgacatg gcagcgtgga      1080
     caggtttgag atcgaaagat atgttgcagt cgatagtaaa tgctgtaatg atcctgaaag      1140
     agtttaaaaa gagaaagcat tcttcagtga ctatcgacga agaaatattg attgtattgg      1200
     tcaagctaaa aaccaattta tcttttcgat gcatatctgt actattccgg attcatgcac      1260
     agaccgtgtc tgtctgtttc tatcgtacag ttccattact gtctgcagca ttaaaacctt      1320
     tgatatactg gcctactagt gagcaaatat ctaagaatat tccacactac tttagacctg      1380
     attttgaaga tgtcgtcgta gttctggatt gcactgaaat gccgatcatg aaacctaaat      1440
     gcttgcattg tcgtataaat acatactccc actataaatc tcgagaaaca gctaaatatt      1500
     tgattggtgt gactcccggt ggaactatct cctatgttag ttgtgggtat ggagggaaat      1560
     cttcggataa gcagattgtt gtcgaagaaa aagtgctaga ccttttaact ccaggacaag      1620
     ccgttatgac tgataaagga tttatgatcg atgaggaatg taagcgacga aacgtgaagc      1680
     tagtccggcc accgttcctc aatggacccc agaaacaact gagcaagttt gaagcaactc      1740
     aaaatgtgtc tattgctgca gctcgagtac acgttgaaag agccatacaa cgtgttagaa      1800
     ttttttcgtt tttcaataca aaaattgatt ctagattttt gtccgttctc gacgacctgt      1860
     tactcatctc gtgtgctatt gttaatattt ccagccccat aattgccaat acaaggtttt      1920
     gaagaaatag ttaaggctca ttttaatttg actttgtaca taaataaacc aaaatcacag      1980
     ttgtatgttt ttattattct taacattaat ccgatgtctt acaacgcatg attctttaaa      2040
     aaataattca atttttcaaa gtatacaata tttttaaata aatgttgaaa taaacttcct      2100
     tcagtgtgtc caagagtcca tatacgtatt cttcatcgag gtcgacagaa atgacgtaac      2160
     atctgtcttc gaactccgag taaattatga aatctgcttt ctcacactta agaacgaaca      2220
     tattaatttg aacttgtcca taataaatgt ggcgttttcg cagttgatta gatttactca      2280
     aatatggtaa atccttcaga acctccgaaa tcgttgatgt ctttcccgcg aatgggaatt      2340
     taactttgtt tattttgcgt tcctctacta ttataccatc tggagagcat ccaatccatg      2400
     gaatatgtgg aggaatgaca aaaccacatc gattcacaga tacaccagtc atgatttcgt      2460
     agctttcaat agctttatgt tcacagcgac gtccgtgatc aatagctgga gtttttaaat      2520
     tttcggggaa cattaatttt acgatttttc gcttccagtc tttcgatttc ttttcctcgg      2580
     tgacataata tgtgaaaagc gaatatgcgt tcgacgctgt aattcgcatg ctgcgttcct      2640
     ctttacattc ttcagaattc tgggaaatcg ttcgcatgca tatatcagtg ctttcttttg      2700
     ctgatacgca gatcttgatt tcataaaagg tcaataggtt tgcctccagt ggaccaatga      2760
     aatacttgta cttcaggtca aattctggtt cgaataattt ttccacatat cgcttcacga      2820
     tagactcggg agaaaagtct tggaaagaaa ttattgaatt cgacgagctc agcgacaatt      2880
     tgctggttga aatttccatt tgaagtacgc agttctcaat ttcactttcg tggttcatcg      2940
     tttcagcttg aatagatggt ctgccacaga tttcataacc aagtgcactg ttcggaaagc      3000
     ctgaaatttc agccaactat tagattacaa ttcaaattct aaataaagtt acttacatga      3060
     tacgaagtga tgcaaaatct gtgatcgctc ctctcctgtt gcagtatatt gtcgatattt      3120
     tgaagatttg cttcgctcgt tagattcttc aatggtagat tcgtttaaac tgtgttcgat      3180
     tgttgtacta tccgacaggt tctccaccga tttcatgctg gcacatagat ccatcaaccg      3240
     cgttgcttta tacaaatctg tagcagtttt agcagcaatt ttgccccact tttgctttag      3300
     atcggtcacc gtcaaaatca gaactgtagc acatctgaaa aaagaggaac acagattgtt      3360
     ctcactttat aatgtttttt agaaattatg ttcaaataag gaaaacatcc attttggtgg      3420
     ggaacttact ttgagtattt cagtgcttta ttttaacttg tttttggaca atataatttg      3480
     gtttagaatt aatgttttta tacatgttgg ctatagcact gaaacaccca aacatggtca      3540
     ccaattataa tggcttttct ttctaataga ctacttacct tagcaagtgg tacaagacgg      3600
     ccatctggtg cttacatttt cctttaccag ctttgcaagt gcatgtgaat gtccactgcg      3660
     gaaatgcttg cttagtacga atttttatca catgcggttc ggagcttggg gaagacgact      3720
     gtaagcacgt tgcaaatatg ctcaccccat cttgatgcac ttgttcagct cctactatca      3780
     acagatgtgc agcattaaac actctttcgc cttcttgtac caaacggctt ccaccggcag      3840
     caaaatgaaa aacttccgat agttgaacgg gtacttcaca ggtgtcgatt tcatgatttg      3900
     actcctaaaa ccgacggacg aaatcacaag aatttttgat gtttcagttg gtctatccat      3960
     gaaaaattta tgtagcatat agataaagag tagcagaaca cttccataaa atcataatat      4020
     tactttatga caattttcat tcataattta atgtaagaaa aacgtaaaca tttgggctac      4080
     tcgaaaatta tgatttcaaa tcgaacggaa aactgaatgc tacatattcg aaaaagttta      4140
     aaacacggtt ttgttgtgta aatacgaatt ctctctttca attgaaactc accattttca      4200
     ctaattaaac gcaaatgttt gaaaaagtca ggtttttaaa ttcgtgaaaa aataacttat      4260
     ttgtttactc tttttgttca cgcacaagaa ctgtcaaaat caacttcgaa gtcgcgaa        4318
//
ID   ISEAG1      repbase;    DNA;    INV; 4879 BP.
XX
AC   AB097148;
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon IseAg1, complete sequence.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element;
KW   gag-like domain; ISEAG1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4879
RA   Kojima K.K. and Fujiwara H.;
RT   "Cross-Genome Screening of Novel Sequence-Specific Non-LTR
RT   Retrotransposons: Various Multicopy RNA Genes and Microsatellites
RT   Are Selected as Targets.";
RL   Mol. Biol. Evol 21(2), 207-217 (2004).
XX
DR   Genbank; AB097148; Positions       1    4879.
XX
SQ   Sequence 4879 BP; 1201 A; 1278 C; 1217 G; 1183 T; 0 other;
     cagtacgaat caaaacgtca acgagtgcag tcgtgttttg attcattttt gcaaaccccc        60
     gcgatggcga ataagcgatc acaatatgcg gacggaacgt tccgcatcga tttctcgatg       120
     gtgccaaagc gaccgtctcc ttcggagacc gtcgatttca tgtgcgagcg gctgggaatc       180
     ggcggaaaaa aagtgcaagt cgcccagcta aatagtgcga agagctgtgt gtttgtgacg       240
     atggaaaggg tggaggatgc ggaggccatc gtcaaggaac acagaggaaa gcactccatc       300
     acgcacgagg aaaagcactt tcccatcaat attgagatgg tagatggggc ggtagacgtg       360
     tccgtgcgcg atctgcctca tctaatcccg gacgaggaaa ttgttgccga gatggcacaa       420
     tacggtgaag tcctatccgt caccaagggc gtatgggccc ccgattcacc gtaagctggt       480
     gcgctcaacg gtgtgcgtgt gttgaggatg aagctgttaa agcccatcct ctcctacgta       540
     acactctgtg gggaggttac aggtgtgtcc tatcgtggtc aggcacaaac ttgccgcaac       600
     tgtgctgcac cggtgcacca cggtctgaat tgtgtacaga accggcaaaa tcggtttgcg       660
     aacgttgtac aagtaaaggc cacgtacgcc aacaccgtta gtgcaaaaac agttgcaccc       720
     acaccacaag cagcgtcaca cactgcagca ggcaatagtg gccagaagaa aaagaagaag       780
     agccgctcaa ggttcctatc ggcggcgaca cctgcaccta cacacgcaaa cgtggaagat       840
     cagcatccac gcgacgcatc gaagatcgcc gcacgactga tcatcccgat cgtgccggtg       900
     accgttcggc cttccagccc gaagccgaac tctcgcaagg ggaagataag caatgcgaac       960
     gataagcatg tcgctccagc tctatctatc gctcccacga cggatgctgt cgtctccgcg      1020
     catgatcggc gcttcgatga tgcgtcatca cctgccgttc ctgccgctcc tgtggccacc      1080
     gccgctcttg cggctaccgc ctttgctgcg actaatgctg cttctgtggc taccgccgct      1140
     cctgcagcta tcaccgctcc tgcagctaac gccgcatcca cggctgctgc tcctgctgct      1200
     gccaccgctc atgcggctac cgcctctcct gtggctaccg ccgcactcgc tgccggcgct      1260
     cctgcgactg tctccactcc tatggataag gatgatcctg ctgctgccgc cgctcctgct      1320
     actgccgaag tccctggtgc tgtcgtcgct aacccagcgg caacaagtgc tccactggcc      1380
     tttaaggtac cgctcgatgt ccttcctgcc ccctttccag gcccttccac ggatgaaccg      1440
     cgaacggtaa cacgtaagcg aaccactgag tcagatgtcg agagtgacgc ctcaagttca      1500
     tccatgaaca gctttacgat ggtcgccaag cgtaagcctg gtcgaccatc caaaaaggcc      1560
     accaccacta acaacctctg aatttcgttg cgatggatac ggtgaccaat aatataagaa      1620
     caattgttaa tggtagctgt aatatagctt ctattaacat caacaccata tccagcgcaa      1680
     cgaaattaga agctcttaag acatttatca ggacgatgga tctggatgtt atatttctgc      1740
     aggaagtata tcatacggat ctagcgcttc caggatacaa tgttttgtct aatgttgacg      1800
     cgtcgaggag gggtacggcg atcgctttac gggaccattt aaaattttct cacgtcgagc      1860
     gcagcttgga ctcacgtcta atctgcgttc ggttggagaa tatagccacc ctatgtaacg      1920
     tttatgctcc ttcgggaagc cagcgtgggg cggagcggga ggaatttttc aaccgtaccg      1980
     tggcgttcta tctgcggaat gcatgtcctc atgtcattct tgcgggcgac ttcaactgtg      2040
     tgttgaagtc gaaggatgtc acgggtgggg ggaatttcag ccttgctctg cgaaacgccg      2100
     taaacagcat gggtatgagt gatagctggg aggctctcag aggcaactct gtggagtttt      2160
     cctacatcac tagtggttcg gggtcacgca tcgatcgttg ttatgtctcc tcttcgctgg      2220
     aaacacagtt aaggactacc gatatgcatg tgctctcctt ttcggatcac aaggcactca      2280
     cagtgcgcct ctgcctccca accccgccca atcgtttgac caacaacggt tattggcagc      2340
     tgaggccaca cgtattaact gaaagaaacc tggaggagtt cagatgcaag tggaataact      2400
     ggactaaaca gcgtcgaaac tacggcacgt ggatctcgtg gtgggtggag ttcgcgaagc      2460
     ctaaaataaa atcatttttc cgctggaaaa caaatgagag attccgaagt ttccacttgc      2520
     accacgaact cctctacaga gggttgaagt cctcatacga gcgatatctg tctgacccta      2580
     acgagttgac gaatatcaat cgtataaaag gtaaaatgct tctccttcag agacgttttt      2640
     ccgaggactt taaacgtatc aatgaaaccc gcgtatgtgg cgaaaacatc tcgaccttcc      2700
     agcttgagga aaggaggagg aggcgaactg tgatcgaaaa actaaatatt gaagacggga      2760
     catccttaac tgataaagac gcgataaatg ttcacattag gagcttcttt tcagagctat      2820
     acaccacaga caacacagac aacacacaaa cagacgacac atttacatgc acacgcgtca      2880
     ttcctgagga ttgtgagatc aataatggtt gcatggagga aatcacttct ggtgagatcc      2940
     tctatgcgat caaaaactca cagtctcgaa agtcccctgg cccagatgga atacccaagg      3000
     agttttatct ccgcgcgttc gacgtcatcg agcgcgagct tgggctcgtg ctcaatgagg      3060
     cactccgcgg agagattcct cgaagcttcg tcgacggggt catagtgctg gtgaggaaaa      3120
     aggggggtgg ggatgccatg tcttcaattc gacctatatc actccttaac acagactaca      3180
     agcttttgtc gaaggttatt aaaccccgtc tcgattgtat aatcgggaaa tgggggataa      3240
     tctcgacagc gcaaaagtgt tgcaacaaac cttgcaacat ttttcaagct gtactctctg      3300
     ttaaggagag ggtggttgat ttgaagatga aacgcaagtg tggtaaacta gtctcctttg      3360
     atctctcgca ggcgttcgat cgcgtcgata gaggcttcct ctttaataac atggtttcta      3420
     tgggtttcaa tcctgggctg gtggggcttt tgagaaggtt tggtgatcag tcctcctccc      3480
     gaatcctagt caacggatcc ctatctcccc ctatttccat ccgacgatcc gttcgtcagg      3540
     gggatccact ttccatgcac cttttcatcc tataccttca tcccctcatc accagactag      3600
     aaggcatatg ctgcgaccag gatgacctgg tcaatgcgta cgccgacgac atctcggtgg      3660
     tgactacctc atcccaaaaa atcgagttgg tgcgtgaggc ttttgaagcg tttggcagag      3720
     tttccggagc ccgcctcaac gtcgacaaaa ccatcgcgct cgacgtggga tacaccacat      3780
     caaatgccat tcaggtccct tggcttcgta ccgtggagag gctaaggctc ctcggtatat      3840
     tgtttaccaa caatgtacga gaagctatga gcctcaactg ggacctgttg atccaccatt      3900
     tccgacagct ggtgtggctt catcgcgtga gggacttaaa cgtggtgcag aaggttgttc      3960
     cgctgaacac cttcctactc cccaagctgt ggtttgttgc atcggtttgt ggcgcccgtg      4020
     caatggacat agcgaaggtg acctgcaccg tgaacacgtt cctctgggat ggatccggag      4080
     gcttccgagt cccactgcag caactggcac tgcctcgcaa ccgtggtggg cttaaccttc      4140
     accttcctgc catcatggcc aaggcgctgt tgacgaaccg gtatgttacg gaacaggatt      4200
     gtctacgagt cggaggtcag cacatttctt gtgctgggaa tcctccgaac atcgccgctg      4260
     tttcgtcaac gtacccgtgt ctgcgtatcg tcatacagca acttggctac caaccaccat      4320
     cagccaccat cacgacacgc tggattcgcc aaacaatgac ggaagtgctt cttgagccga      4380
     aggtatcctt ggaaaatccg tcagtgaatt ggcggctact ctggcgcaat attcatcgtt      4440
     cctgtctatc gtcccttcaa cgcagcacgc tcttcttgct ggtaaacggc aagatcagtc      4500
     atggagagct gctgcatcga atgaaccgcg tcccatctcc gtcatgttcg ttttgttctg      4560
     caatagacac cctggaacac aaattcgctg gctgcagaag agttgctgat gcttggcaga      4620
     ttctgcacca gcgaattagc gttgtaattt cagggtgtcc gtcttcgtca acgttattgt      4680
     tcggtttgtt gcgtttgcct gtactaaacg gcattaatgc aggtaaacgc agccatatcc      4740
     taagtttgtt tgcgaactat gtcatccaca tcattggaaa caatgatgct gtgattgaca      4800
     tagaagttct gcgttgttca ttgtaaaaat taatgttaaa tagaacctaa gcacgttttt      4860
     aataaaacat taaaaaaaa                                                   4879
//
ID   ISFUN1      repbase;    DNA;    INV; 928 BP.
XX
AC   AJ309320;
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila funebris insertion sequence Isfun-1.
XX
KW   ISFUN1; direct repeat; Dispersed repeat; insertion sequence;
KW   Inverted repeat.
XX
OS   Drosophila funebris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   funebris group; funebris subgroup.
XX
RN   [1]
RA   Amador A. and Juan E.;
RT   "Nonfixed duplication containing the Adh gene and a truncated
RT   form of the Adhr gene in the Drosophila funebris species group:
RT   different modes of evolution of Adh relative to Adhr in
RT   Drosophila.";
RL   Mol. Biol. Evol 16(11), 1439-1456 (1999).
XX
DR   Genbank; AJ309320; Positions       1     928.
XX
SQ   Sequence 928 BP; 276 A; 181 C; 175 G; 296 T; 0 other;
     ttataccctg tacagggata tattaacttt gtgaaaaaaa ttgttgtaac aggcagaagg        60
     aggcatctat gaccctataa agtatatata ttcttgatca gtatcaacag ccgagtcgat       120
     tgagccatgt ccgtctgtct gtctgtccgt ccgtccgtct gtccgactgt atgtacgcgt       180
     cgatctcagc aactattaga gctagagaca ccaaatttgg catgaaggtt cctctatacc       240
     atacgcagat caagtttatt ttaaattttg gatacccatc ccgcgcaaaa aattagagtt       300
     tcaaaagggt attctttaaa caccttaaac accttcgaaa aggctaaagt cgaccgcatt       360
     cgacagtata ataccctgta caggcttcta tattagaatt atgttgataa taggtacttt       420
     gattaaaata aaagtaagaa cataacaggt gtttaaagaa tacctctttg aaactctcat       480
     tttttgcata cgaattcttt gcatgcttat agcagctaac tttcacatat ttatacatat       540
     tcaattaaaa gctgagtgtt acgacactta atttacttat gcttgtgtcg cagtagttcg       600
     ctatctcgct cgcacaaata tgcacacatg gtaagcagac gcatgtgtca tagtcgttcg       660
     ctgtctcgct cgcacacatg tgctgcctgc cgctctacga ttccgtggaa aaataacttt       720
     tattgctgat tatctgatga aactttcagc gttccttcta tatatcattc ttaacgcacc       780
     tgttaagtaa gaagtgtata cgttgaaaaa tgtggctatt attcgttttt tttcaatttg       840
     cgggggaagg gggggaggta tccaaaatgt aaaataaact tgatctgcgt atggtataca       900
     ggaaccttta tgcctgtaca gggtataa                                          928
//
ID   ISL2EU-10N1_BTa repbase;    DNA;    INV; 1633 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-10N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1633
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 623-623 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 1633 BP; 471 A; 346 C; 332 G; 484 T; 0 other;
     gaggttgttc catcccccat tagatttggc cccctatcaa atatgatcca tcttttcagg        60
     agtgatacag tagcatgcga gacgttcaaa tatggcggtc attttgactt aggccccccc       120
     agagaggggg ggcggggggt caaagacaaa accttcaact gcctataact tttgagcgaa       180
     aaatcggatt gagttgaact tttttttaaa tgaaagatct caaaaagatc tatctgctga       240
     taccagaaaa attgaaaaaa agttaaattt aatgcaaatt tttagcaatt tttcgatttt       300
     ttaggagaca aaattttcaa ttttgtcgtg tttcggcacc gcgcaatgac tctactaaaa       360
     caaaaaccag ttttttagat tctacactca atttcctata agatgcaaaa aaccgcatct       420
     tggggaaacg tttagatcgc gagctatggc ttgtcaaagg tagccccgcg ctgttcgcat       480
     atcctccacg cgtctgccac cgatcctgtt gcccctcctc ccccatccta aatgcaaatt       540
     aacattctac tacccagctt tcgtatatat ctgcgttata ggtacgtgaa aattccagca       600
     agttcgtgat ttccagtgga attgatgctt tatatctctc tccccccccc caacccggcc       660
     actgtgctcc aaatattgtg cgaaaaagaa ttataaacat tttcttgtta catgtttttg       720
     ctgatgtagc accctgtgac tacgaaatcg aattgaggta attttttatc ccacctccca       780
     acctccttgt gtaacctgtg tgtatccttg tgtaactgct ttcaattcac ttaataaatt       840
     acttttttta tacctattct gttcatttta gcgtgtaatc tagaaaacaa atacctccag       900
     ttagacacaa gaaaaaacta ttacaacttg taggcagggg caaacttcag tgccagtggc       960
     cgggtggggg gggggagcga aataaagtat caattccact ggaaatcacg aacttgctga      1020
     aattttcacg tacctataac gcagatatat acgaaagctg ggtagtagaa tgttaatttg      1080
     catttaggat gggggaggag gggcaacagg atcggtggca gacgcgtgga ggatatgcga      1140
     acagcgcagg ggcgcgcgct cagcgcgggg ctacctttga caagccatag ctcgcgatct      1200
     aaacgtttcc ccaagatgcg gttttttgca tcttatagga aattgagtgt agaatctaaa      1260
     aaactggttt ttgttttagt agagtcattg cgcggtgccg aaacacgaca aaattgaaaa      1320
     ttttgtctcc taaaaaatcg aaaaattgct aaaaatttgc attaaattta actttttttc      1380
     aatttttctg gtatcagcag atagatcttt ttgagatctt tcatttaaaa aaaagttcaa      1440
     ctcaatccga tttttcgctc aaaagttata ggcagttgaa ggttttgtct ttgacccccc      1500
     gccccccctc tctggggggg cctaagtcaa aatgaccgcc atatttgaac gtcttgcatg      1560
     ctactgtatc actcctgaaa agatggatca tatttgatag ggggccaaat ctaatggggg      1620
     atggaacaac ctc                                                         1633
//
ID   ISL2EU-10_BTa repbase;    DNA;    INV; 4162 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4162
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 668-668 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. TSDs are 0-bp long. Target are AAATTT, TE inserted
CC   between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1246..1320,1314..2183,2140..3321)
FT                 /product="ISL2EU-10_BTa_1p"
FT                 /translation="MHLTCGTVTFKGHSFPVRVCLIDTKHEMMATCSICGV
FT                 SLEKKPKSEKVISNGILFCKVCYYKNRPAANESASSARSDVKIKLDIKCAI
FT                 RCHHSCIFLCKNVATKSLVRIPKHLRAFVLTKYRVIIREDSRCCQDHLTGD
FT                 TFEKNAAVLLKQELKSAEFSSEEITEMIDNLRLYSSSLEIEDKSNKSFFTE
FT                 TEDVFIWTGLNRDQFDELSRYVSPEDEEYGHRILGAYLMHLYCGLSERRIA
FT                 AFLTIGLSTVSRYISICRNKLYNDFAPVHLGNVMRDKVRHETTKIAKKLHG
FT                 VSEEDETLIMHRLGRYLRFYKQKSCTVWDGTYVFTNKSENFAFQRATYSGH
FT                 KKRNYVKPMMVISTNGYIMNALGPDEFWAGSLSDADILKCVMTTEWFRANF
FT                 EPGDIFVVDRGFQRVQDDLQSRGFVVSIPVSKAENVQLTTFEANESRICTK
FT                 LRWVVEWVNSSVKRFKHFQNPIPSLEVQCLFTDFRIACAMHNRFLSRQFSD
FT                 SDDPNIAISMLQKRNLPNIVQEIVEREKLQRKKVMFEDLNEDHFSQLPVWN
FT                 KEDLIKVFGSYHFRMAKGYIGDHFRDGKYKFQVAKDTYLPDFPKYGLLLNS
FT                 PFFLRANIISRHKSQTEYKVFILMDTDDDSSEAVKGTFCFCKMGARTVDPC
FT                 SHAFAFIWYLFYGRHKKSLKYPSEFLNKSFPLTKTMFSNNDCSEDHACSMD
FT                 CAEDTENEN"
XX
SQ   Sequence 4162 BP; 1212 A; 816 C; 889 G; 1245 T; 0 other;
     gaggttgttc catcccccat tagatttggc cccctatcaa atatgatcca tcttttcagg        60
     agtgatacag tagcatgcga gacgttcaaa tatggcggtc attttgactt aggccccccc       120
     agagaggggg ggcggggggt caaagacaaa accttcaact gcctataact tttgagcgaa       180
     aaatcggatt gagttggact tttttttaaa tgaaagatct caaaaagatc tatctgctga       240
     taccataaaa attgaaaaaa agttaaattt aatgcaaatt tttagcaatt tttcaatttt       300
     ttagaggaca aaattttcaa ttttgtcgtg tttcggcacc gcgcaatgac tctactaaaa       360
     caaaaaccag ttttttagat tctacactca atttcctata agatgcaaaa aaccgcatct       420
     tggggaaacg tttagatcgc gagctatggc tcgtcaaagt tagccccgcg ctgagcgcgc       480
     gccccctgcg ctgttcgcat atcctctacg cgtctgccac cgatcctgtt gcccctcctc       540
     ccccttccta aatgcaaatt aacattctac tacccagctt tcgtatatat ctgcgttata       600
     ggtgcgtgaa aatttcagca agttcgtgat ttccagtgga attgatgctt tatttcgccc       660
     ccccccaacc cggccactgt gctccaaata ttgtgcgaaa aagaaatata taaattttct       720
     tgttacatgt ttttgctgat gtagcaccct gtgactacga gatcgaattg aggtaatttt       780
     ttatcccacc tcccaaccac tttttggtgt attgagcatt taccattcat gagaggccga       840
     cattattatg ggtattcata ataggcggct gagttattaa aaaatatttt gcacgatttt       900
     tctccacata gctttgagaa ataaaaaatg atttcgttgt catctagtcc gctttatgct       960
     aaaaaaaatt aatcggccga tattatgttt aacaccaaat tgtggcatgt ccatacgatt      1020
     ccgcctcaag tagcgtcatg aagtccgaag ttttcactta cttcatttaa aaattaggtt      1080
     tcttcaaata gagcgaataa tgtcaatctt gtcctgttcg ggaaagtgtt tggcctttat      1140
     ttagcacctg cactgcgaag ttatctcgaa tatactcttt gcgcgctgca cccggtgcgt      1200
     tggcttgcta ttatctgtaa tagtcttatc tcgatatctg gaaagatgca cctaacttgt      1260
     ggtactgtga catttaaggg acacagtttt ccagtgcgcg tctgtttgat tgacacgaaa      1320
     tgatggctac gtgttccata tgcggtgttt ctttagaaaa aaaaccgaaa agtgaaaaag      1380
     ttatttccaa cgggatttta ttttgtaaag tgtgctatta caaaaatcgg cctgcggcga      1440
     atgaaagtgc ctcctcggct cggagtgatg tcaagatcaa actagatatt aagtgcgcta      1500
     ttcggtgcca ccattcctgc atttttttgt gcaaaaacgt tgctactaag agtctcgttc      1560
     ggattccaaa gcatcttcga gcttttgttt tgacaaaata tcgagtgatc atacgcgaag      1620
     acagtagatg ttgtcaagat cacttaaccg gtgacacttt tgagaaaaat gctgctgtcc      1680
     ttttaaagca ggagttgaag agtgcggagt tttcttctga agaaatcaca gaaatgatcg      1740
     ataatttgcg tttatactca tcgtcgctag aaattgagga taaaagcaac aaatcttttt      1800
     ttacagagac tgaagatgta ttcatttgga ccgggttaaa tagagaccaa tttgacgagc      1860
     tttcgaggta cgtcagtcct gaagatgaag aatatggtca tcgaatattg ggcgcgtatt      1920
     tgatgcacct atactgtggt cttagtgaaa gaagaattgc cgcgtttctt acaatcggat      1980
     tgagtactgt aagtcgttac atttctattt gtcgtaacaa gttgtacaac gacttcgcac      2040
     ctgttcattt aggtaatgtt atgagggaca aggtgagaca tgaaacgact aaaatcgcga      2100
     aaaagttgca tggcgtttcc gaagaggacg aaacactgat catgcaccgt ttgggacggt      2160
     acttacgttt ttacaaacaa aagtgaaaac ttcgcattcc agcgagccac gtattcagga      2220
     cataaaaaaa gaaactatgt caaacctatg atggtcattt ctactaacgg atatatcatg      2280
     aatgctctgg gtccagatga gttttgggct gggagcttga gtgacgcgga cattctcaag      2340
     tgcgtcatga ctacagagtg gtttcgggct aactttgagc ctggagacat ttttgtagtt      2400
     gaccgcggct tccaacgtgt tcaggatgat ttacagagca ggggcttcgt cgtgtccata      2460
     cccgtctcta aggccgagaa cgtgcaactt acaactttcg aagccaatga gagccgaatc      2520
     tgcacaaagt tgagatgggt ggtggaatgg gtcaatagtt cggttaaaag attcaaacat      2580
     tttcagaatc caattccatc cctagaggtg caatgtctat tcacggactt tcgcattgcc      2640
     tgtgccatgc acaaccggtt tctttcaagg caatttagtg attctgacga tccaaatatt      2700
     gctatctcga tgctccaaaa aagaaacctg ccaaacattg tccaagaaat agttgagaga      2760
     gaaaaattac agcgtaaaaa agttatgttt gaggacttga atgaagacca tttcagtcag      2820
     cttcctgttt ggaacaaaga ggaccttatc aaagtgttcg gatcatatca ttttcgaatg      2880
     gcgaaaggat atattggtga ccattttcgc gatggaaagt ataagttcca agttgcaaag      2940
     gatacctatt tgcctgactt tcctaaatac ggacttttgt taaattctcc ttttttcttg      3000
     agggctaata taatttctcg gcacaagtcg caaaccgagt acaaggtttt cattttaatg      3060
     gataccgacg atgattcttc agaggcagtt aagggtactt tctgtttttg taaaatgggg      3120
     gcaagaactg tcgacccatg ctcgcatgca tttgctttca tctggtatct tttttacgga      3180
     aggcataaaa aatccttgaa atatccatct gaattcctca ataagtcatt ccctctaacg      3240
     aagacaatgt ttagcaataa tgattgttca gaagatcatg cgtgcagtat ggattgtgcc      3300
     gaagacaccg aaaatgaaaa ttgacagtga tgtttgtaag tgtaactgct ttcaattcac      3360
     ttaataaatt acttttttta tacctattct gttcattata gcgggtaatc tagagaacaa      3420
     atacctccag ttagacacaa gaaaaaacta ttacaacttg taggcagggg cacacttcag      3480
     tgctagtggc cgggttgggg gggggcgaaa taaagcatca attccactgg aaatcacgaa      3540
     cttgctgaaa ttttcacgca cctataacgc agatatatac gaaagctggg tagtagaatg      3600
     ttaatttgca tttaggaagg gggaggaggg gcaacaggat cggtggcaga cgcgtagagg      3660
     atatgcgaac agcgcagggg gcgcgcgctc agcgcggggc taactttgac gagccatagc      3720
     tcgcgatcta aacgtttccc caagatgcgg ttttttgcat cttataggaa attgagtgta      3780
     gaatctaaaa aactggtttt tgttttagta gagtcattgc gcggtgccga aacacgacaa      3840
     aattgaaaat tttgtcctct aaaaaattga aaaattgcta aaaatttgca ttaaatttaa      3900
     ctttttttca atttttatgg tatcagcaaa tagatctttt tgagatcttt catttaaaaa      3960
     aaagtccaac tcaatccgat ttttcgctca aaagttatag gcagttgaag gttttgtctt      4020
     tgaccccccg ccccccctct ctgggggggc ctaagtcaaa atgaccgcca tatttgaacg      4080
     tctcgcatgc tactgtatca ctcctgaaaa gatggatcat atttgatagg gggccaaatc      4140
     taatggggga tggaacaacc tc                                               4162
//
ID   ISL2EU-1N1_BTa repbase;    DNA;    INV; 1981 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-1N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1981
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 657-657 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 1981 BP; 588 A; 421 C; 403 G; 569 T; 0 other;
     ggaggggtgg cgatttgggc catttccggc cccacctaat ccgggacttt ttttgctgtg        60
     attcgttacg tataagtgtc aagagaaagc atgccaagtt tcaggccgat cggcccaata       120
     ttcggggggc aggggccccc cgaattttta agcgcaaaat cggttttaat tttgtagcgc       180
     cgtcaatttc gctcgtatac agatgaaaat tgggtgccag gggtaaaatt ttgcgttctt       240
     tccatttccg ccgtcaaaat tggcactggg gcaaaattaa gggggatttt ggggggtttt       300
     tcgcgttttt tcgcgttttt taccaatttt ctgcggtttt catgctttaa gtcagagatt       360
     ttgagccaaa cgaccacaga tttgatttct acgcaaaaaa ttacatagga acacaatgac       420
     caactaacac tcaacagcgg atttctctag gaaaaactga cccataagta tgtgttcact       480
     cagaaatttt gaaaatagcc atgtttcggg tacagcccaa gcttgtagca ctaccatatt       540
     cacatatgat acgctctagg tcgaccctgt tgatattatc gggaacttga aatgctaccc       600
     gcttgggcgg agggtcgaat tctcctcaga aacgaataaa aaaggcgata aaattacgtt       660
     tcacgtgaat tgttgcgaga ggaatgttat tatatcggca actttcacct ccaacttatg       720
     taattttttg cgtgctttcc atttctgcca tgaaaattgg catcaaagca attttaaacg       780
     ggttttttgg ggttttttat cattttttaa tcatttttta ccagtttttt ccggtctttt       840
     gcggttttca tgtttgaaac ctcaccaaat gagccaaacg accacaaatt ttaatttttc       900
     tcaaaatacg tttactatca catccataaa atacgtcacg gatgaatcgt atagcagaag       960
     aaatgttgtg taaaatcctt atctctcatt ctgaatcctc gtcagaccat aagtaagcag      1020
     catcctctag gcagtctcca taagaggatg acagtcttcg gggctctttt tcttgatgtc      1080
     ggtaaaaacc aagaaaccac agaactgata tgccacatga ggtttcaaac acgaaaaccg      1140
     caaaagaccg gaaaaaactg gtaaaaaatg attaaaaaat gataaaaaac cccaaaaaac      1200
     ccgtttaaaa ttgctttgat gccaattttc atggcagaaa tggaaagcac gcaaaaaatt      1260
     acataagttg gaggtgaaag ttgccgatat aataacattc ctctcgcaac aattcacgtg      1320
     aaacgtaatt ttatcgcctt ttttattcgt ttctgaggag aattcgaccc tccgcccaag      1380
     cgggtagcat ttcaagttcc cgataatatc aacagggtcg acctagagcg tatcatatgt      1440
     gaatatggta gtgctacaag cttgggctgt acccgaaaca tggctatttt caaaatttct      1500
     gagtgaacac atacttatgg gtcagttttt cctagagaaa tccgctgttg agtgttagtt      1560
     ggtcattgtg ttcctatgta attttttgcg tagaaatcaa atctgtggtc gtttggctca      1620
     aaatctctga cttaaagcat gaaaaccgca gaaaattggt aaaaaacgcg aaaaaacgcg      1680
     aaaaaccccc caaaatcccc cttaattttg ccccagtgcc aattttgacg gcggaaatgg      1740
     aaagaacgca aaattttacc cctggcaccc aattttcatc tgtatacgag cgaaattgac      1800
     ggcgctacaa aattaaaacc gattttgcgc ttaaaaattc ggggggcccc tgccccccga      1860
     atattgggcc gatcggcctg aaacttggca tgctttctct tgacacttat acgtaacgaa      1920
     tcacagcaaa aaaagtcccg gattaggtgg ggccggaaat ggcccaaatc gccacccctc      1980
     c                                                                      1981
//
ID   ISL2EU-1_BM repbase;    DNA;    INV; 2695 BP.
XX
AC   .
XX
DT   12-MAY-2011 (Rel. 16.05, Created)
DT   12-MAY-2011 (Rel. 16.05, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2695
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2695 BP; 922 A; 436 C; 462 G; 875 T; 0 other;
     ggggttggca actgtcaaag tggcgctggt gtgcattgtt cccataacat tcaatatttg        60
     tattggaatt tttgattaaa aattatttta agcacaatga cgcgttgttt tgtgccaata       120
     tgctcagaaa ttggagtaca tcaattcccg aaggacaaga aaattggaag actgtggtta       180
     aaggccattt gacgcgaaaa aagtactccc acaaaaagtt cgaggttatg tcgtaaacac       240
     tttgtggaat ctgactatga aaacattagt aaatacacag gtatgcttct ttctgtcaaa       300
     tatttataat gcatgactag gtgtagcaca catctttgtt ctcttattaa aaaaatccaa       360
     aaataattag ttaggcacac tattagttgc taacatattt tgcaagtaga tttatgctgt       420
     aaggaacctt ttaacaaaca caaaatcaga ctggaggaaa cacattcctc atgagctgtt       480
     gttcattatc agctgttact attgaaagtt ctatctaaat cgctgcatcc attgtaataa       540
     caaatatttt gaaactatgg tcaggtttcc ttgtgatagt atatttaaat gtttttcttt       600
     gtgttgtagg tgtcaaacat taacataaat atctgaagaa aggtgctgta ccatctatat       660
     tttcatggaa tatgaaacca gtttctgaag aaacaaaaag tagagaacaa aggttacaaa       720
     ctcgtaacct taaaaaacag ctttttagcc tgcccaacac ttcccaatac tgtgaagata       780
     tagtacccct tgaagaacac agcaatgtgc attttgattc aaatgtctct caagaaattc       840
     taatagaaaa taataactct agtatagatg aaacaattac aaggcatcat attactattg       900
     gaactcaaac atccaatata ttaagattgt tctctacaga gctattactt gcagacgatg       960
     agacagtgca atactacacc gggttggaaa cagcatctaa gttttcatta gttttaatca      1020
     cacttttgcc aatgtcaaat gatataaggt atcgctggag tagagtggtc ggcatatcaa      1080
     tagaagatca atttttaatg ttactaatta agcttagaag aaacacaaca gattttgaat      1140
     taagtaaaat tttcggtgta agtaaaactg aagtgtctaa ttttgttgta acatgaataa      1200
     attttgtcag tgatatctag aacctaattg acatttggcc tagccgcagc ttagtaaatt      1260
     attatatgcc taattgtttt agaacacatt atccctccac aagggtgatt atagatggga      1320
     ctgaaatagg catacagaag cctagtcaac ctgatgctca aaaagcgtca tttagttctt      1380
     ataaacataa aaataccttg aaatttttgg taggagcttc accaggggga ttattatcat      1440
     atgtttcaaa cggctacgct ggttctgcaa gtgatcgaca gatagtagaa cgaagtaagc      1500
     tgctgcagat ttgtgattct ggagatagta ttatggcaga cagaggtttt aatgtacagg      1560
     atctgtttgc ctctaaagga attagtataa atatcccatc ttttttaaaa ggtaaatcac      1620
     aaatcccagg tgttcagtta aagatagatc aaaaattagc tagtcagagg gttcacatag      1680
     aacgattaat ttcatatgtg taatgttatg taattttaga gaaggaattg tcaataaaaa      1740
     taattaaaaa tattcctgat tttttatttc gacaagtgtg tatagttata atacagatat      1800
     ttttcataca atgcttcttt gaaaatattt tcataaaaga tatctaattt atttaacata      1860
     ttatttataa aattattgtc tttttcaaca taaatcactt tgatgtcctt gtaggtgtaa      1920
     atgaccaagt tgcagtatgt tttgcctgag cagtataact gcccttggat ttgataataa      1980
     tatgggcagg tttttttaga gacaatatcc cgttacattg ttctaagtaa ggcaccgttg      2040
     ttatatttat ttcatgtttt ctgctagcgt atggacattt cacttcaatt atagtttctt      2100
     cgcccaacac accatcagga gatgcagcaa gatatgggcg ctcttggcta atgaaaatgc      2160
     cacatggctc cactagcaaa tcatatatat tagcatattt tgctagagca attttttcat      2220
     tttgtttcaa aattaaaatt ttggtcatat agctctaatc tgaaaaaagt aaaataatac      2280
     attagttggt aggtaatgtg tgtaatatga gcaattcttt ttgcacatgc tacaaggaat      2340
     aaagttccta aggtacacaa tttaatatta ttattataat agctaccgga aacagtttga      2400
     gagaagtttt ctaagttaaa ataaaacatc aacattgtac ctttcgacaa aatccacttt      2460
     ttttcctcgt aaagatgcac cacgttttct caactcctcc tttaattctt taactatcca      2520
     gttggaatac atgttgtaaa actgtttagc actacttaga aagtaataag aaccgtatca      2580
     aagtcacaaa atgccgaaat atcacgaacg caaaacacac aaaatggcgg ctctctgtga      2640
     caagggaaca agctacgctg gcgacatctg agaaaagctt taaccggcca acccc           2695
//
ID   ISL2EU-1_BTa repbase;    DNA;    INV; 4333 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4333
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 659-659 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. TSDs are 0-bp long. Target are AAATTT; element
CC   insert between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1297..3354
FT                 /product="ISL2EU-1_BTa_1p"
FT                 /translation="MTRHHRCGCCGRRGEKKKLRPISSREVLSYLKLKASS
FT                 VKWSTKVCAKCFLDASKGTIASSSLKTTQSVSTFDSAGSSSSENLSSSTSI
FT                 LPGTCRDEEPSYSEQVKVEIGCTATSHRKCIVCGNSKKSLKVIPIEGRSKF
FT                 FSDKGIFIPRGTRCCSSHLDKGVLKPDISIPQMSDSCFLNGNEVQELLQGL
FT                 RHYVAKKGLDFDTPGVLSTNDYWNLTGVTAEQFDSILSIIVSRLNESCNRS
FT                 ARTALAVFLTKLRTGLSYSVLCSIFALTKDTVKRCIHSVRNALMIEFVPKH
FT                 LGFGHMSRDELIEKHTRPFAMSLFAQNDEDTAILVADGTYVYIEKSSNYKF
FT                 QRRSFSMHKHRPLVKPMMLVSTTGYILEVMGPFFADAKNNDAAIITSHMKN
FT                 VSDGLRAWLLEKDVLIVDRGFRDCIGFLEDSGLVVKMPHFLNNQKQHTAVE
FT                 ANESRLVTSVRWVVEATNGVLKTFKALGHVMPNSQIPFIGDYVRIVCSIIN
FT                 AFRPPRILDSHDAHTKAQRMLALSKRGNELQAQVIRENWSQKRVIWKKMDA
FT                 RELEDFPRLTVEEIEFMTFGRYQLKQAQSYTSEHQDEGGLYELMIHKECSD
FT                 ILRVQIQSRHSASMIHNLWIKYSLFGISEWYCQCPVGARMVGCCAHVASVL
FT                 WFLGFYRHQEKEPRRLSSSYGDCLEDAAYLWSDEDSE"
XX
SQ   Sequence 4333 BP; 1245 A; 873 C; 970 G; 1245 T; 0 other;
     ggaggggtgg cgatttgggc catttccggc cccacctaat ccgggacttt ttttgctgtg        60
     attcgttacg tataagtgtc aagagaaagc atgccaagtt tcagaccgat cggcccaata       120
     ttcggggggc aggggccccc cgaattttta agcgcaaaat cggttttaat tttgtagcgc       180
     cgtcaatttc gctcgtataa agatgaaaat tgggtaccag gggtaaaatt tcgcgttctt       240
     tccatttccg ccgtcaaaat tggcactggg gcaaaattaa ggggggtttt gggggggttt       300
     cgcgtttttt cgcgtttttt accagttttc tgcggttttc atgctttaag tcagagattt       360
     tgagccaaac gaccacagat ttgatttcta cgcaaaaaat tacattggaa ccacatggcc       420
     aactaacact caacagcgga tttctctagg aaaaactgac ccataagtat gtgtccactc       480
     agaaattttg aaaatagcca tgtttcgggt acagcccaag cttgtagcac taccattttc       540
     acatatgata cgctctaggt cgaccctgtt gatattatcg ggaacttgaa atgctacccg       600
     cttgggcgga gggtcgaatc ctcctcagaa acgaataaaa aaggcgataa aattacgttg       660
     cacgtgaatt gttgcgatag gaatgttatt atatcggcaa ctttcacctc caacttatgt       720
     aattttttgc gtgctttcca tttctgccat ggaaattggc attaaagcaa ttttaaacgg       780
     ggttttttta tcatttttta ccagtttttt ccggtctttt gcggttttca tgtttgaaac       840
     ctcaccaaat gaaccaaaag acaacaaatt ttaattttag gtaaaaaatc gcatagggtc       900
     ataacggcca acttacatat cagcggattt ttctagataa aaattgaccc aaaaatatgt       960
     gttcactcga cattttcggg aataggcatg ttttgggagc aacccaagct tgtagcacta      1020
     acattttcat atacaatacg cctcaggtcg actcttttga taattgcggg acttatagcc      1080
     tgattgggat gcattcttgc gcggtccatt cgaatcatgt tgacatgttt tgcattgtac      1140
     aagtgatatg attctgaaca gataagattt tcaggaggca ctcccgatat gcgttgaaag      1200
     gtaagttcat tatagtgttt actgtatcag tgcattcagt taccgtcaat attccggtcc      1260
     gttcgtatta tttgcgtatt ttcgagagat cggaaaatga cgcgacatca tcgatgtggt      1320
     tgttgcggtc gtcgaggcga gaaaaagaaa ctgagaccca tttccagtcg agaagtgtta      1380
     tcctatttaa agcttaaagc ttcgtcggtg aagtggagta cgaaagtgtg cgcgaagtgt      1440
     ttcttggacg catcgaaagg gaccatagcg agctcatctt taaaaaccac gcagtcagtc      1500
     tccacttttg attctgccgg atcctctagt agtgaaaatc tgtcatcgtc cacttctatt      1560
     cttcctggaa cttgcagaga tgaagagccg tcatattcgg agcaagttaa agtggaaatc      1620
     gggtgcacag ctacctctca cagaaagtgc attgtttgtg gtaattcaaa aaaatcatta      1680
     aaagtaattc ctattgaagg taggagcaag tttttttcgg ataaaggaat ttttattccg      1740
     agaggaacgc gatgttgctc aagtcattta gacaaaggag tgttaaaacc agacataagc      1800
     attccgcaaa tgtctgactc ctgtttttta aacgggaatg aagtgcaaga gctccttcag      1860
     gggcttcgtc attatgtggc caaaaaaggc ctcgactttg ataccccggg tgtgttgtcc      1920
     actaatgatt attggaattt gacgggggtg actgcagaac aatttgattc tattctgagt      1980
     attattgtgt cacgtttaaa cgagtcgtgc aatagaagtg cacgcaccgc cctagctgtt      2040
     ttcttgacca aacttaggac ggggttatct tactcagtcc tttgtagtat ttttgctcta      2100
     acaaaagata ctgtaaaaag atgtattcat tccgttcgca atgccttaat gatcgaattt      2160
     gtgccgaaac atcttggatt tggacacatg tccagggatg aattaatcga aaagcatact      2220
     cgaccatttg ctatgtcact tttcgctcaa aacgacgagg atactgccat tctagttgcc      2280
     gatggaactt acgtgtatat cgagaaaagt tctaactata agttccaacg cagatccttc      2340
     tccatgcaca aacatcgccc tcttgttaag cccatgatgc ttgttagtac aacgggctac      2400
     atcttggaag tgatggggcc gttttttgca gatgcaaaga ataatgatgc tgcaataatt      2460
     acatcacaca tgaaaaacgt ttcggatggg ctgagagcct ggttacttga aaaagatgtg      2520
     ttaattgtgg atcgcggatt ccgggattgc attggctttt tagaggactc gggtctggtg      2580
     gtaaaaatgc cacacttctt aaataaccaa aagcagcata cggcagtcga ggcaaatgag      2640
     tcgaggcttg tcacttctgt tagatgggtt gttgaggcta ctaatggagt cctcaaaact      2700
     ttcaaagcct tagggcatgt aatgcctaat tcccaaatac catttattgg agattacgta      2760
     cgaattgtgt gcagcattat caatgcattc aggcctcccc gcatattgga tagtcatgac      2820
     gcgcatacta aggcccagag aatgttagcc ctttccaaac gtggaaacga gttgcaggct      2880
     caagtcatcc gagagaactg gtcccaaaaa agagtgattt ggaaaaagat ggacgcaagg      2940
     gaacttgaag acttcccgag attgacagtg gaagagatcg aattcatgac tttcggaaga      3000
     tatcagttga agcaagcgca atcatacaca tctgagcatc aagatgaagg tggattatac      3060
     gaattgatga ttcacaaaga atgctcggat atactacgtg tccaaatcca aagccgtcat      3120
     tctgcatcga tgattcacaa cctatggatc aagtactcgc tgttcgggat ctcggagtgg      3180
     tactgtcagt gtccagtggg agcaagaatg gtcggctgct gtgctcatgt ggcatcagtt      3240
     ctgtggtttc ttggttttta ccgacatcaa gaaaaagagc cccgaagatt gtcatcctct      3300
     tatggagact gcctagagga tgctgcttac ttatggtctg acgaggattc agagtgagag      3360
     ataaggattt tacacaacaa tttcttctgc tgtacgattc atccgtgacg tattttatgg      3420
     atgtgagagt aaatgtattt tgcgaaaaat taaaatttgt tgtcatttgg ttcatttggt      3480
     gaggtttcaa acatgaaaac cgcaaaagac cggaaaaaac tggtaaaaaa tgataaaaaa      3540
     ccccaaaaaa accccgttta aaattgcttt aatgccaatt tccatggcag aaatggaaag      3600
     cacgcaaaaa attacataag ttggaggtga aagttgccga tataataaca ttcctatcgc      3660
     aacaattcac gtgcaacgta attttatcgc cttttttatt cgtttctgag gaggattcga      3720
     ccctccgccc aagcgggtag catttcaagt tcccgataat atcaacaggg tcgacctaga      3780
     gcgtatcata tgtgaaaatg gtagtgctac aagcttgggc tgtacccgaa acatggctat      3840
     tttcaaaatt tctgagtgga cacatactta tgggtcagtt tttcctagag aaatccgctg      3900
     ttgagtgtta gttggccatg tggttccaat gtaatttttt gcgtagaaat caaatctgtg      3960
     gtcgtttggc tcaaaatctc tgacttaaag catgaaaacc gcagaaaact ggtaaaaaac      4020
     gcgaaaaaac gcgaaacccc cccaaaaccc cccttaattt tgccccagtg ccaattttga      4080
     cggcggaaat ggaaagaacg cgaaatttta cccctggtac ccaattttca tctttatacg      4140
     agcggaattg acggcgctac aaaattaaaa ccgattttgc gcttaaaaat tcggggggcc      4200
     cctgcccccc gaatattggg ccgatcggtc tgaaacttgg catgctttct cttgacactt      4260
     atacgtaacg aatcacagca aaaaaagtcc cggattaggt ggggccggaa atggcccaaa      4320
     tcgccacccc tcc                                                         4333
//
ID   ISL2EU-1_CFl repbase;    DNA;    INV; 3667 BP.
XX
AC   .
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   18-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-1_CFl;
KW   Spy_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3667
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
RN   [3]
RP   1-3667
RA   Han M.J., Xu H.E., Zhang H.H., Feschotte C. and Zhang Z.;
RT   "Spy: a new group of eukaryotic DNA transposons without target
RT   site duplications.";
RL   Genome Biology and Evolution 6(7), 1748-1757 (2014).
XX
DR   [2] (Consensus)
XX
CC   There are 3 sequences with ~99% identity. ~250-bp TIRs. This
CC   sequence is the longest copy.
CC   Spy_CFl in [3] corresponds to this family.
XX
FH   Key           Location/Qualifiers
FT   CDS           1281..2792
FT                 /product="ISL2EU-1_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MCLSGEIYTFLRMLNHVDITWMTEDFCYYLSLLLGLQ
FT                 FINRPYVIRGPELQVFLQGLRDVARSLTRIDDENSLTDQEFESFCSITKDQ
FT                 FRELFTYCDRVPREGGYRNIGKKNLLMFLCKMRLSDEFLCAMFQYSSRQAT
FT                 SLAVATVRQSLMQRFVPTNIGFDAITREDYIARHVTQFANELYNPDPLTPR
FT                 VIAIVDGTYTYIPKSTNFRALRQSYSIHKGRHLIKPVLIVAPDGWILNIQG
FT                 PYFSDHRNNDAAILQNEFEHDADRMRRWFQNNDIIIIDRGYRDAILLFERL
FT                 GITWKMPALLNQNERQLNTEDANESRLVTKSRWVVEARNGHLRSIFKIFQQ
FT                 VIQIQHISDIGDFYRIAGAIINRYRPLILMEGANVQMAQKLLQRAREPNII
FT                 QALIKVENLHTRNAQRWVPLNAAQVQDFPVLTIQYLKDLTFGIYQVKLAPS
FT                 YVQDKLRREADEEFQLEMLRDENRLSQPGFIRVRVFSRFRNATKHQLWISY
FT                 ISTDEENE"
XX
SQ   Sequence 3667 BP; 1198 A; 663 C; 684 G; 1122 T; 0 other;
     aaaggacccc gcaccaactt tatgaaaaat ggatcccgat caaaatggct gcatttttta        60
     tatgttacgt atctcgtcgt cctgaacaaa tctccatggg cacagagcct gaaactccac       120
     gggttccgag ataaacccac ttaactccta gaaaccatcc caaacaaacc acaagcaggc       180
     taacccacct gacgctggga acagcgagtt taattgttta tttttcttga aataattaaa       240
     tcccacatca caagcgggct aaccaactta cctcctaacc cacctaatcc ctagaaacca       300
     cccctaccaa actacaagca ggctaaccga cctgtttctg ggaacagtga gtttagtcgc       360
     ttatttttcg tgaaataatt taacccaggg tacagcgagt ttgattattt cctttttaat       420
     aaataaataa tggcaatcgt attcaaaagt ccatattctt acatagacaa acacacacac       480
     acacacacac acacacacac atatatatat aacccaccaa aaatactggg ttattaatat       540
     tagaccttgg cgtattcagc aaattgtaaa attgtatctt gtaatattaa gttaaagctt       600
     aaaatattaa attaatttat gatcacttat agttttggca gcttttttta aaaggataag       660
     taatgcaata atttttttca ttttttggga ttactcaatc ttatctgtcc atacgactct       720
     ttacttacct tatctctttt caggttttag gattacttta agtttttttt caaaactgct       780
     gatatcagtt ctttccagcg ctacttatat cagccatttt catcaatttt tatcaaagtt       840
     actcagtact tttaagaaga ttgtatatac aggcatatat caaagtaatt taaacggcgc       900
     gaataaatta tttaattcca atatttatat attcttgaaa ctgtaataaa aaatggccaa       960
     cagaaacgtg ttgcgctatt atatttgcga tagacaattt cctcctagaa ctatgtctcg      1020
     aattgatgga gtgcataatg ttgtcaaaat atgtattgct atccagagaa gggacgcttt      1080
     taatagacct cccttagaag taacaaatct tacacgtata tgtatcaatt gtaatcagtc      1140
     agttcgggaa gaaatacaag ctattgaaca agatccaagt catttaagat taaatgtcct      1200
     aacacaaacg aggaacagta cgtgtctcat atgcaacgcc caggttgatt tgcaccgatt      1260
     gtcgattgag tgtaaagcta atgtgtttat ctggagaaat atatacattc ctgagaatgt      1320
     taaatcatgt cgacatcact tggatgaccg aggatttttg ttactacttg tcactgttac      1380
     ttggcctgca atttattaat agaccgtatg tgattagagg gccagaactt caagtatttc      1440
     tgcaaggtct gcgtgatgta gcaagaagtt tgacacgaat agatgacgaa aacagcttaa      1500
     cagatcagga gttcgagtct ttctgttcga taacaaaaga tcaattcaga gaattattta      1560
     cttactgcga cagagttcct cgtgaaggag gttacagaaa tattggtaaa aagaatttat      1620
     taatgttttt gtgtaaaatg cgactttcag atgaattcct ctgcgccatg ttccaatatt      1680
     caagcagaca agcaacaagt ttagctgttg ctactgtgag acaatctctg atgcagcgtt      1740
     ttgtacccac taatattgga tttgacgcaa ttacgagaga agattatatt gccagacacg      1800
     ttactcaatt cgccaatgaa ttatacaatc cagatcccct tactcctaga gttattgcaa      1860
     ttgtggatgg cacttataca tacattccga aaagtacgaa cttcagggca cttcgacagt      1920
     catattctat tcacaaagga cgtcatttaa tcaaaccggt attaatagtt gcacccgatg      1980
     gctggattct caacattcaa ggtccatatt tcagtgatca tagaaacaat gatgctgcta      2040
     ttttacaaaa tgaatttgag catgatgctg atagaatgag aaggtggttt caaaataatg      2100
     atattattat tatagacaga gggtatcgcg atgccattct attgttcgaa cgattgggta      2160
     ttacttggaa aatgccagcg ctactcaatc aaaatgaacg tcagctcaac actgaagatg      2220
     ccaacgagtc gcgacttgtt acaaaatcaa ggtgggttgt agaagccaga aatggacatc      2280
     ttagatcaat ttttaaaata tttcagcagg tgatacaaat tcagcatatt tccgatatag      2340
     gagattttta tcggatagct ggagcaatta taaataggta tcgtccactt attttgatgg      2400
     agggagccaa tgttcaaatg gctcaaaaac tacttcaacg agccagagaa ccaaatatca      2460
     ttcaggcact cataaaggtt gagaatcttc atactagaaa cgcgcaaaga tgggttccct      2520
     tgaatgctgc acaagtacaa gactttccag ttttaacgat tcaatatttg aaagatctta      2580
     cattcggtat atatcaagta aagcttgctc cttcgtatgt gcaagataaa ttacggcgag      2640
     aagctgatga agaatttcag ttagaaatgt tacgagatga aaacagactg tctcagccag      2700
     ggttcataag agttcgagtt ttttctcgat ttcgcaatgc tactaaacat cagctttgga      2760
     tatcatatat atcaactgat gaagaaaacg aataaatggt tgacgaaaat gaggatgaag      2820
     agtctataca aggttattat tgcacctgca agtctggtgc ttggactgtt gagacgtgtg      2880
     cacacattgc aagcgttata tagtttctgg gatgctcaga atcaagaaat tgtacattat      2940
     ccatcgcaaa gactaattga aaccatacag gatgcaggaa atagaccaca ctaagaaaga      3000
     atagatagtt gtccatgata cttaattgaa aattaaaata cctttgaaaa tgtttaaaaa      3060
     atcagccctt ttaagggcta aatgatgtat aaaatccgat cgcgcaacct ccacgtcgta      3120
     tacatcgggt aacgctgatg tcgacggttt atgaattata tatggaaata tacattcaat      3180
     ttttatttca aaatacaata ttactgaaaa taatcgagag atttttaatg ctgctatata      3240
     aaaaataagc gattgctatt tcctggcttc ctgtggatgt ggaagcttgt gctttaatta      3300
     tttatttact aaaaaaagga aaaagcattc gaactcactg ttccctgggt tacgtgggtg      3360
     ggagagcttg tagtttggtt atttatttac taaaaaggaa ataatcaaac tcgctgtacc      3420
     ctgggttgta ttattttacg aaaaataagc gactaaacgc gctgttccca ggaacaggtc      3480
     ggttagtctg cttgtggttt gttaggggtt gtttctaggg gttaggtggg tttatctcgg      3540
     aacctgtgga gtttcaggct ttgtgtccat ggagagattt gttcaggacg acgagatacg      3600
     taacatataa aaaattcagc caatttgacc gggatccact ttccataagg ttggtgcggg      3660
     gtccttt                                                                3667
//
ID   ISL2EU-1_HSal repbase;    DNA;    INV; 3918 BP.
XX
AC   .
XX
DT   28-JUL-2012 (Rel. 19.04, Created)
DT   28-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   ISL2EU DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Mariner/Tc1;
KW   ISL2EU-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3918
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 837-837 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1024..1509,1513..2916)
FT                 /product="ISL2EU-1_HSal_1p"
FT                 /translation="MPRICSMCERSLEKRARSEYHEVNGIFCKRCYVDKKG
FT                 PTKSSSSNELSATVDETATENQSIILPFMDTQESHSKCVFGCEKRVLRRLS
FT                 REDCLEVFIQTRESVYVPYGARACCSHGEGDSFKVPDEFAASQFSVSLNAN
FT                 EIALCFKTMKNMVISERKKALNLIVHFSSMSNNVLVFETGLNREQFQYLLQ
FT                 FVKDGQLHVRNAEFALAVYLTLLRRAYTYDELALRWSITRQTASSNCEEIR
FT                 RVLSKSFYNKYLSLDSDRHQLVSHQTKVATQLHAPSGDRIILVLDGTYIFI
FT                 QKSDNFSFQRETYSGHKKRNLIKPMMVVFTDGYIGGVFGPYXGNKNDAAIL
FT                 NELLDTNIWSRFEAGDVLIVDRGFRDSLSKISEKGFVPKMPHFSNTPTAPL
FT                 TTTQANQSRLVTKNRYIVEVLNGRIKKTFQYFDKTIQNTTIPYMFEDFRIA
FT                 CALLNMTFKLPTISSIDVLITERMLSFSNRDNALSLLVREENLNARKSYFQ
FT                 RIEALEIDFFPQLDDSQLQLYTCGKYQIKMARSYYADHLNKAGDFEFEVAK
FT                 ETAHINYRKYGIDVDFRLNGILFKARLRSRHSNSVKYFVYLLVDKTITAGI
FT                 DAIIGHTCNCKVGQACCRMLFPCCHTNLVFLW"
XX
SQ   Sequence 3918 BP; 1188 A; 753 C; 699 G; 1271 T; 7 other;
     aaaggaggat gttaagaaga gaccattttt ggcctgctag tgtaaagtga aaacatatta        60
     gagaattgtt atttggacta tttaagaaag gaaagtaaca tttatttcat cctgaagtgt       120
     tgggaacata attagaatga gtaaaattca attcgtttta tcctttgatg acaggaagca       180
     ttcacttctt atattttaga aaatacttaa ccgatattca tgaaatttgg tgtaaaagga       240
     ttttgtgtaa tactcttttc gattttagag ccaaaaattc aaaattcaaa atggcggacc       300
     caatatggcc gccgcgaaac attaaaaaaa tgcaaatatt gttcatactc tatggttata       360
     ttatttacat tatattacaa ggaggtttga aggctctttt caattctata gagaaaatct       420
     caaaattcaa gataacggtt cgaatatttg atatatgaga ccgttcctga ggcagagcgt       480
     ctcacgcgcg gtcggtggct cggccgccgc gcttcgggtg gaggaaacac atgcgttgcc       540
     tctaaaatcg gcccgagctg ctcacttaat tcctagcact gatttggaat atacatcgcg       600
     tattaactca gactaatgac gccatacacc cgtccgttat ttggagcttc agctgtcgtt       660
     atcctattgg tgtacatctt catttatttt tctattcaag tagaatcttt caagcatact       720
     tgaccgtgct attaatcttc atttgtacca ttttcatttg cttccttcta cgttttcgac       780
     tagaatattt tgatcgtact aatccagact ttgcgcttgg ttttgcgcta ttcatccatt       840
     atttgctgct tcagaacagt tgtcattctt ttagtgtaca gtcttcattt gtttcttttc       900
     acgtattcga gtataatatt ttaaacgtgc tgtcccatac tgttcacgtt agttattctg       960
     tgtgttttac atctgttcgg cctgaattcg tatccctgtg tagatatcct gtatcaaact      1020
     acaatgccca gaatttgctc catgtgtgaa cggtccctcg aaaaaagggc ccgctcagaa      1080
     taccatgaag ttaatggtat tttttgtaaa agatgttatg tagataaaaa aggaccaacc      1140
     aagtcctcat ctagcaatga actctctgct actgttgatg agactgccac tgaaaatcag      1200
     agtatcattc tgccatttat ggatactcaa gagtcccaca gcaaatgtgt atttgggtgc      1260
     gaaaaaagag ttctgagacg gctttccaga gaagattgtc ttgaagtctt tattcagacc      1320
     agagaaagcg tatacgttcc atatggtgca cgtgcttgtt gttctcatgg agaaggcgat      1380
     tcttttaaag ttccggacga gtttgcagct tctcagtttt ctgtttcgct gaacgccaat      1440
     gaaatagcat tatgtttcaa aacaatgaaa aacatggtga tcagcgaaag aaagaaggca      1500
     ttgaatcttt aaattgtaca cttttctagc atgtccaaca atgttttagt atttgaaaca      1560
     ggccttaata gagaacagtt ccagtaccta ctgcaatttg taaaagatgg acaactacat      1620
     gttcgcaatg ctgaatttgc tcttgctgtt tacttaaccc ttcttcgtcg ggcatataca      1680
     tatgacgaac ttgcattgcg ttggagtatt actcgacaaa cggcaagttc gaattgcgaa      1740
     gaaatcagac gagtgttatc aaaatcgttt tacaataaat atctttccct ggattccgac      1800
     cgtcatcaat tggtttccca ccagacaaaa gtcgctacac aattacatgc accttcaggt      1860
     gatcgcatta ttcttgtgtt ggacggcact tatatcttta ttcaaaaaag cgacaatttt      1920
     tcttttcaac gagaaacgta ttccggtcac aagaagcgaa acctgattaa gccaatgatg      1980
     gtcgtgttta ctgacggcta tataggaggg gtgtttgggc cttatcmagg aaacaagaat      2040
     gacgcggcta tactaaatga actgttagat acaaatattt ggtctagatt cgaagctggg      2100
     gacgttttaa tagtcgatcg tggctttaga gattcccttt ctaaaatatc ggagaaagga      2160
     ttcgtaccaa aaatgcccca tttttcaaat actccaacag ctcctctaac taccactcaa      2220
     gcaaatcaat ctcggctcgt aacaaaaaat cgttatattg ttgaagttct gaatggcaga      2280
     attaaaaaaa catttcagta ttttgacaaa actattcaaa atactacaat tccatatatg      2340
     tttgaggatt ttagaattgc ctgtgcatta ctaaacatga cattcaagct accgactata      2400
     tctagtattg acgtacttat tactgaacga atgcttagct tttcaaacag agacaatgct      2460
     ctctctttat tagttcgaga agaaaacctc aatgcacgaa aatcgtactt ccaacgtatt      2520
     gaggctcttg aaatagactt ttttccccaa cttgatgatt ctcagcttca attgtacaca      2580
     tgtggcaaat atcaaataaa aatggcgcgg agttactatg cggatcactt gaataaagcg      2640
     ggagattttg agtttgaagt agctaaggaa actgcacaca ttaactaccg taaatacgga      2700
     atagatgtag actttaggct gaatggcatt ctattcaaag ctcgcttacg ttctaggcac      2760
     tccaattctg ttaaatactt tgtctacctg cttgtcgata aaacaataac ggctggaatt      2820
     gatgccatta ttggacatac ctgcaattgc aaagtcgggc aagcgtgttg taggatgctg      2880
     ttcccatgtt gccacactaa tctggtcttt ctttggtaag gcgcgctttt tagccgctat      2940
     cccaattccc gctcaacatc tggacgacta tttcaacaca cagtcttcat cagaatcaga      3000
     ggaagataca gacgacgaaa actgaataga tacagttttc aatatttcag gaatggcaga      3060
     ggttataaat agattgtaaa tattttttat tctacatagt ttaaatagga tttaagtctg      3120
     ctgctaacaa tatgtttatg tggcactgga tgakctccaa gaagagcgaa actggacatt      3180
     cttgagccag tacgtttctt aattcgttag tgcgtgatta ttcttctwta attaaattcc      3240
     taacttcsag aagaaccgat tataaaaacc cttgtaatat gaatttcatg agtttcaaac      3300
     aacatttgca ttttcagact acttcactat cggccatatt gcatctgtca gcttgaattt      3360
     cggatttttg attttacatt ataaaacatc accatcaaaa acttatgttt catgaatatt      3420
     aaattatatt tccatttctg accatttcaa cggtagscat attcgatccg tcatcttgaa      3480
     ttttgagttt ttctctacag aattgaaaag agcgcgcctt caaaccccct tgtaatataa      3540
     ccatagattw tgaacaatat ttgcattttt twaatgtttc gcggcggcca tattgggtcc      3600
     gccattttga attttgaatt tttggctcta aactcgaaaa gagtattaca taaaacccct      3660
     ttactccttt accaagtttc atgaatatcg gtcaaatact ttctaaaata tgagaagaga      3720
     ttatgcgtac atatgcttcc tgtcatcaaa ggataaaacg aactgaactt tgctcattct      3780
     aatcatgttc ccaacactgt atcaggatga aataaatgtc actttccttt cttaaatagt      3840
     ccaaataaca attctctaat atgttttcac tttacactag caggcagcaa aaatgacctc      3900
     tttttaacat cctccttt                                                    3918
//
ID   ISL2EU-1_LHu repbase;    DNA;    INV; 3159 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   ISL2EU-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3159
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 356-356 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. ~310bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           712..2790
FT                 /product="ISL2EU-1_LHu_1p"
FT                 /translation="MAWRNRLNCYICDRDFVRNQMSRIDTDENANKREIAI
FT                 RRRDDFQRPPLAVTNLTRICITCNQSIRNEITEMERDNTCLRLNVLTQTAN
FT                 RTCVICNADADVHRITLECRVNVFVLRDIFIPEDVRSCQHHLDDQGFFLQA
FT                 LLPGLRSINRPYVIKGLQLQMFLQGLRNVARDQRRFVDENSFTDAEFESFS
FT                 PVTKQQFLELFDYRDRVSCPGGYRYVSKKDLLMFLCKMRQGLSDDFLKVIF
FT                 EYPSRQATSLAISTVRQSLMQRFVPTNIGLNAITRGDYIQRHVTDFANELY
FT                 NPEPHIRRVIAYIDGTYSYIPKSSNFRILRQSFCLHKGRHLLKPVLIVAPD
FT                 GYILDIQGPYFSDSRNNDAAILQNEFHRDVERMREWFQERDLMIVDRGYRD
FT                 ATELLTRLGIRWRMPALLERGQSQLLTDEANDSRIITKTRWIVEARNGHIK
FT                 SIFKFFQQTISIPHLPNLGDFYRIAGAIINRYHPSVQMEGANRELARQLLE
FT                 KANEVNVVQALVEAEHLNTRNAQRWIRLNAQHVPDFPILDLHFLRDLTVGI
FT                 YQIHLAPSYIQDKLQREESEEFQIEMLRDVQRIPQPGLIRVRVYSRFRNAA
FT                 KYQLWISYRPTNDHDMDDGMDVQDGPHIQGYYCTCKSGARTLGTCAHIASV
FT                 LWFIGYARHEHVRYPSSRLLYTICDAANRPPQENLNNVSNVIDV"
XX
SQ   Sequence 3159 BP; 895 A; 670 C; 692 G; 901 T; 1 other;
     ctaaaggacc ccgcacaaac cttatggaaa atgggtcccg gtggatttgg ctgaaacttt        60
     ggaaatttgt agtttacgtg atcctgatga aaagttctca ttgccccaac ttgattcatt       120
     gagccgtttg agctctaggg accgttgaaa gtaggaaata ggcgactgcc accgccaccg       180
     tgtaggaaat cacctgataa tgcctccctc tcctaccctc cccccactcc tctttctctc       240
     tcttcctctc cccctccctt ctccgcgtgc gcgcgcgcgt gtgcgtgcgc gcgcgcgcgc       300
     gcgtgtgtgc gttacagcag agatgtggac cntacggttc gtcatttccg caaatgtatc       360
     attctgtcgt taatgccgga aaatcattct acttcgtaga caaaactgaa aacggatcta       420
     cgattctcag atccaatatt taggaatcta taaaagatac catctatgat accatatacg       480
     ttgtgtttct gtattgttgc ccccgagtta tcccatagtt attcgatata tccgattttc       540
     agattggcac atgtatattt ttgttttctc ttatcctgca tagctaatat taaaggcatt       600
     tttatttggt gactttattt tttggatgta catcatcaac agaaggaaac attgataatc       660
     tggtttagtc gatacaaaca ttttcttcct agcgtatttc aatagctaac tatggcttgg       720
     agaaatcgtt tgaattgtta catttgcgat agagattttg tacggaatca aatgagtcga       780
     atagatacag atgaaaatgc aaacaaacgt gagattgcca tccgtagacg tgatgatttc       840
     cagaggccac ctctcgccgt gacaaatctt acgaggattt gtatcacatg taatcaatct       900
     attcgcaatg aaataacaga aatggaacgc gataatactt gtctgcgact caatgtattg       960
     acacaaactg cgaatcgtac ttgtgtgatt tgtaatgctg atgccgatgt ccacaggatt      1020
     acacttgaat gtagagtaaa cgtttttgtt ttacgagata ttttcattcc tgaagatgtc      1080
     agatcatgtc aacatcatct ggatgatcaa ggtttttttc ttcaggcatt gctacctggc      1140
     ttgcgatcca ttaacagacc ttacgtcatc aaaggactgc aacttcaaat gttcctgcaa      1200
     ggactccgaa atgtggcaag ggatcaaaga agattcgttg atgagaacag tttcacagat      1260
     gctgaattcg aatccttttc tccagtgacc aaacagcagt ttctggaact atttgattat      1320
     cgcgataggg tgtcttgtcc aggcggctat agatatgttt ctaagaaaga cttgttaatg      1380
     ttcttatgca aaatgcgaca aggactttct gatgattttc ttaaagttat cttcgagtac      1440
     ccgagcagac aagcaacgag tttagccatt tccactgtcc gacaatcttt gatgcaacgt      1500
     tttgttccga cgaacatcgg tttgaatgca atcacgagag gagattatat ccaaagacat      1560
     gtaactgatt tcgctaatga attatataat cccgaaccac atattcgtcg tgtaatcgcg      1620
     tacattgacg gtacttatag ctacattcct aagagtagca attttcgtat tctccgacag      1680
     tcattttgtc ttcataaagg acgacattta ctcaaacctg tgctgatagt cgcacccgat      1740
     ggctacatac tcgatattca aggtccatat ttttcagaca gtcgaaataa tgatgctgcg      1800
     atccttcaga atgaatttca tagggatgtt gaaagaatgc gagaatggtt ccaagaaaga      1860
     gatctaatga tagtagatag aggatatcga gatgctacag agctactcac tcgccttggg      1920
     attcggtgga ggatgccagc acttctcgaa cgaggacaaa gtcaactcct tacagatgaa      1980
     gctaatgatt cacggataat cactaagacg agatggatcg tggaggccag gaatggccac      2040
     atcaaatcta tctttaaatt cttccagcaa acaatatcga ttcctcatct tcctaatttg      2100
     ggtgatttct atcgtattgc tggtgcgata atcaataggt atcatccttc tgttcaaatg      2160
     gaaggagcta atagagagtt ggctcgtcaa ttactggaga aagcaaatga agtgaatgtt      2220
     gtccaagcac ttgttgaggc tgaacatctg aacactcgta acgctcaaag atggatacgt      2280
     ttgaatgccc aacatgttcc tgattttcca attttggatt tacattttct aagggatctt      2340
     actgttggca tctaccaaat ccatttagca ccatcgtata tacaggacaa gttacaaaga      2400
     gaggagtcgg aagaattcca gattgaaatg ttgagggacg tacagaggat accacaacct      2460
     ggtttaataa gagttagagt gtattctcga tttcgcaatg cagcgaaata ccaattatgg      2520
     atatcatatc gaccgacaaa cgatcatgat atggatgatg gaatggatgt tcaggacggc      2580
     cctcacatcc aaggttacta ctgcacttgc aaatccggtg ctcgaactct gggtacatgt      2640
     gcacacattg cgagtgtttt atggttcatt ggatacgcac gacacgaaca tgttcggtat      2700
     ccttcgtcga gactccttta tactatttgc gatgcagcga ataggccacc gcaagaaaat      2760
     cttaataatg tatcaaatgt tattgatgtt tgaacattag tttattgttc tacacacaca      2820
     cgcacgcgca cacgcgcgcg cgcgcgcaca cacacgcgcg cgcgcgcgcg cgcgcacgca      2880
     cgcacgcgcg cgcgcggaga agggaggggg agaggaaaag agagaaagag gagtgggggg      2940
     agggtaggag agggaggcat tatcaggtga tttcctacac ggtggcggtg gcagtcgcct      3000
     attttctact ttcaacggtc cctagagctc aaacggctca atgaatcaag ttggggcaat      3060
     gagaactttt catcaggatc acgtaaacta caaatttcca aagtttcagc caaatccacc      3120
     gggacccatt ttccataagg tttgtgcggg gtcctttag                             3159
//
ID   ISL2EU-1_TCas repbase;    DNA;    INV; 4013 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 24.09, Created)
DT   30-DEC-2011 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon from the red flour beetle genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4013
RA   Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1707-1707 (2019).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1175..2278
FT                 /product="ISL2EU-1_TCas_1p"
FT                 /translation="MNLEEVPSTSTAVVAAPADIIQDAPLESMGVQAPLVS
FT                 HAALEAEMYFLKKENAELKAKIQYLTVRFCYENVQGNDKLIVLYTGLPNSQ
FT                 IFEALFHLIEKLDIKYYHKWTVQKLTRIDQLFLTLVKLRLNFPQLDLAQRF
FT                 GVAQSTVSNIILTFVHVIYEILYKQFMTTMPSREKNKSCLPTCFSNFTNCR
FT                 AVLDCTEIFTVVSRKSMSTQKLTYSTYKHHNTFKGLIGVAPNGVITFVSDL
FT                 YVGSTSDQKVVLNCGIIDMLKTGDMILADKGFLIQNILPPGVTLNIPPFLS
FT                 NVQFTPEQVKCTENIARARIHVERAIRRLKCYHILNFLPESLCHYGDIVFK
FT                 ATAALTNLQFPLIKEVAELFQDCDD"
XX
SQ   Sequence 4013 BP; 1230 A; 768 C; 713 G; 1302 T; 0 other;
     tacgcgctat cagtgtgacg tagacatttg aggtaggtca gcaccttaaa gctaaacaat        60
     cgccattttc aatgcttttc ttatgggcat ttaaaagttt ttcgtatttc tttaatgcta       120
     gaagtgtagg aacattactt ttacagagaa atgatagcta tgaaaaatgc aatgtcgttt       180
     cttaaagatt ttagcaactg agctaatatt tctgtaagtt gaacacataa atccttttct       240
     aacctaactt ttttcaaact tcaaaattca gtttttctta atttggacat catattgatg       300
     taaattatta tgtggccttt taaaactgag ggaaaaatgg tttgccacac taatgacatt       360
     ggatttcttc tgaatgacga attcatgggg tgcaaccggc gcaaccccaa taaacgggtt       420
     gttttctgtc cccctccccc atcacgaggg atgaatagca ggtatacgag ggtagagggt       480
     tcaggcacat acatggttga aagtagtacg ggttgtgagt tctgtgcttc tttcgtgagt       540
     gtcttttgtt atcgtgtttt ttccgatcgt tctccatatc ttcgtgttct tgaattttta       600
     aaattctgtt tttccaagac attatctcat ttttgtggta catcattagg tatgatttgt       660
     gaataatatt ttgttgcgat actttgatag ttcatgtgta gtaggttttt acatcacaac       720
     tatgggaatg tgttgggctc cagattgcaa acactatagt actcgcgata aatgccattt       780
     ttttagtttt cctaagtcgg gaaaagaacg agcactatgg aaaaaattgt tgaggtaatt       840
     tttaatagat gttttgatat taatttttaa ttgcttgttt cattgttaaa tgtagaagag       900
     atgtagaacc cggaccagga gcctacgttt gcagctgcca ttttcgggat ggaagaaagg       960
     aaaatggtcc tgaattattt ttgcacaata tcgcaaaaag agcctatttt caagtggaat      1020
     ctccagaaaa aaaaaagatg aaaaaacaag gactcccttc ttgttctagt tccgctgaat      1080
     cattaaggta aaaagtgaat cctagtttta aattgattta caatttgatc atttgaatag      1140
     tgttgatata ccggaagaaa cagtaccatc gacaatgaat ttagaggaag tgccatcgac      1200
     gtctacagcc gtagttgcag caccagcaga tataattcaa gatgctccgt tagaatctat      1260
     gggtgtgcaa gcacccttgg tgtcacatgc ggctcttgaa gcagaaatgt attttctcaa      1320
     aaaggaaaat gctgaactta aagcaaaaat acaatatctg acagtacgat tttgctatga      1380
     aaatgttcaa ggaaatgaca aactcattgt tttatatacc ggtcttccca atagccagat      1440
     tttcgaagca ttgtttcact taatcgaaaa gttggacata aaatattacc acaaatggac      1500
     agtccaaaag ttaactagaa ttgaccaact ctttttaacc ctagtaaaat tacgactcaa      1560
     tttccctcaa cttgatttgg cgcaacgctt tggggttgcc caaagcacag tttctaatat      1620
     tattttaaca tttgtccatg taatatatga aattttatat aaacagttta tgacgacaat      1680
     gccttcgcgc gaaaaaaata aatcttgctt gccaacatgt tttagcaatt ttactaattg      1740
     tagagcagtt ctagattgta ccgaaatttt cactgtggta tcacgtaagt ctatgtcaac      1800
     acagaaatta acatatagta cttacaaaca tcataatact ttcaaagggc taattggagt      1860
     tgcacccaat ggtgtcatca catttgtaag tgatttatac gtgggatcaa cttctgatca      1920
     aaaagttgtt ttaaattgtg gaataatcga catgttaaaa actggagata tgattttagc      1980
     cgataaggga tttttgatcc aaaatattct gccaccaggg gtcactttga atattccacc      2040
     ttttttatca aatgtccaat ttacaccaga gcaagttaag tgtaccgaaa atattgcacg      2100
     tgcaagaata cacgtcgaaa gggcaatacg ccgattaaaa tgttatcata ttttaaattt      2160
     tttgccagag tctttgtgcc actatggaga tattgttttt aaagcgactg ccgctttaac      2220
     aaacctccaa tttccattaa ttaaagaggt agcagaattg tttcaggatt gtgatgatta      2280
     aaataatgta aaataaaaac catctattta tatacagttt attattgtga aataaaggaa      2340
     atatattggt caagataaaa ttcttttaaa atattgatat tttctgacca ccccggatct      2400
     ttttcaattt gaaatatctc tgtgcacttt ggtgtccaca cgacaaagta gcagatactt      2460
     cgaccagtga tgtgcatttg cccctgtact tggtggtaat aattgtgatt gctgttaaga      2520
     ttaatgtcct cattttcatc cctccaataa aaatattttt tatccttcag ggcttcagac      2580
     aaactgtcag tgtccctata tttatatggg catttaattt cgagaatccc atcttcttcc      2640
     actaatccat caggacttgc tcccaaaaag cctgattctt ccaacctaca aaaaaaagta      2700
     atattacatt attcatctaa gttatacgtg ttaattattt tcgacctacc aaaatcccgt      2760
     ctcttggact ttaagattcg tcgcttcttc aaattctctg agcgctgtct tctcgtgggt      2820
     cttaccccac tgcacagcag caaccctgtc aagcgaatag ccttccgcca aatttttaaa      2880
     taaagagggt gggaatcttc gtctactgca agcagatagt accatgccaa acctgctggc      2940
     cgttaaacga tgtttccttg ctacatgcca attttcgtta acatgttggc cccgagtgca      3000
     cgcctcaacc agtttaatgc gtgcctcatc tattctgcac ttctccaaaa gaaacttttg      3060
     tttgtctatg gcctgcacgt attctaagct ttgtagaatt tcttcgatat ctgcaataat      3120
     ttttctggct tcttcacttg cttctggtct taggagccaa gtgaagccca ccacattcgt      3180
     gacgcctatt tcggcacgga actgaataat ttcgtcctca gtagaggacc tagacagtgc      3240
     cgtatagttt gataatttcg gcttgtaaac atcagctaac ttaatgactt ctgtttgtgg      3300
     tgttgttttt gatggggcac tccactgaca ctcaatgtca gtagcactta cattataatg      3360
     agcataatat aatgctgcag ccatatgatg gcaagccacg ttgccccttg ggcaggtaca      3420
     atgtgccgtc ttaacccctt cttctaggtc atatgaaatc taaaacacac tttgtagaag      3480
     aaatgtctaa cagttaaata aatacaaacc tccacagtat aatttagctt tttcatgctc      3540
     ggtagaactt ctgcagaaat tctcatcggt tgtactgtgc catcaaacct aaatttggtg      3600
     acgtgaccgc tggtaaaagc attttctccc cgaactaaaa agcgattacc gtccccaaaa      3660
     aatttcgcaa taaagtgaaa cttaacaatg tgcttttctg ccactaaaat gcataaatat      3720
     aatagtttct caaagtataa ttaaagctta ctcactttct caccgacaac gtggttccct      3780
     gtattctttt ataaagttcg tattttcaca aaaagtcact tctaaattaa attaaagtct      3840
     ctagtggcac aaattacacc cgctgcagct atttgacacg ttattaacgc acaaacacaa      3900
     ccaaaaaacc gaaaaacgta ttacaccaca tgtaaaagac tggttgttta gctttgagca      3960
     actgacctac cgtaataaga gtggggaggt gacgtcacga ctgatagcgc gta             4013
//
ID   ISL2EU-2N1_BTa repbase;    DNA;    INV; 2639 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-2N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2639
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 637-637 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 2639 BP; 755 A; 539 C; 540 G; 805 T; 0 other;
     ggaggggtat cgttaagggc cttttttggc cccaccctaa aattcctcaa ctccgcgatt        60
     ttttggtcat tgaaggtcta tattttacgg aatgcacaat ggttttgtca tttccagtct       120
     atttcggggt ctaccactgg cctaaacatg ggtctgaagg ccaattttgg cgaaaaatgc       180
     gggtttttca gcattcgacg cgctgtttcg taacgatccc ttcggaggac aaaaaaatcc       240
     ttcaagtatg ttcattaggg atgtaagaga gtcactttgg ccaattttcg tcgatgtcaa       300
     actttgcgct catagttaaa aaaaactttt tagaattttt cttgtttttc atcattattt       360
     aaaatggctt aaaaaaggcg actcatctta caccagaatt aaactttttt ggcagaaaat       420
     ggtcgtgggt ggtcaaaacc ttcctctaag aactttttcc gatttaaagc cccccaaaaa       480
     agccggtgtt gccatatttc attgcctaaa atcatagaaa accgagtact tatttcagta       540
     tttgggggct atttctcgtc gagctcattc agaaaagtcc aaaaaccttc atttttcata       600
     tgttatggcc gaatcaccag taattacata catttatcta actacagaac ctcccatcgc       660
     ggcacggcgt tgccacatca tcggggaaaa atcgagaaaa atccacgtct ccctggattt       720
     gagccatttt ttcggattat gcggatggaa taaagttgaa agacttaaat tgcagtattc       780
     agagatgcaa gtggatcata ccttgtgccg gtattcatta ttttaatata ttgcgcttat       840
     agacaaccca tattcttacg atttctaggc acgatatttg cgcaagagga tgcgactttc       900
     aaacattggc cgtgatctga agtccgaaag aaagtaagcc atgtgtcaga atcgcgagtc       960
     ctcaatgctg aatttttacc cgccctgaca accaccacca tcccccctcc ctcccccagc      1020
     cctcttatcg gcagcgattg ttcagaattc tacttcctga ttttttttct caatttgcat      1080
     acttagtata ggcacaaagc acatggagga tgaattacga tatgtgtgag atttaggatg      1140
     cttaatatta tttcctttag aagacatatg attgtacgta tacaaagtcg cgcatatcgc      1200
     gtattgcgaa tacgctgatt ttcagtctgc gagatgctta gagtgacgat taccgtagat      1260
     gtatattaac ggttatcttt acggtagact aaagatagac tgattactgg gtgttatagc      1320
     gtatctccaa tccaccgaat cttcaaatct tcgtatcaca gtaagtactt tatcactaac      1380
     aactagtaaa tatttacatc agatgcggtt gattcccacc tgaaattgag gtttcagtgt      1440
     gctcgcgatc acgtttcagt cagcttatcc cgcagatttt ttcggatagt ttgaagttta      1500
     gtgctccttt tcttctgttt tttacttcaa aacgtgcttc tctaagcggt ttttttaccc      1560
     cgattatcag cctatcattt cgggaagcag aattctgaac aatcgctgcc gataagaggg      1620
     ctgggggagg gaggggggat ggtggtggtt gtcagggcgg gtaaaaattc agcattgagg      1680
     actcgcgatt ctgacacatg gcttactttc tttcggactt cagatcacgg ccaatgtttg      1740
     aaagtcgcat cctcttgcgc aaatatcgtg cctagaaatc gtaagaatat gggttgtcta      1800
     taagcgcaat atattaaaat aatgaatacc ggcacaaggt atgatccact tgcatctctg      1860
     aatactgcaa tttaagtctt tcaactttat tccatccgca taatccgaaa aaatggctca      1920
     aatccaggga gacgtggatt tttctcgatt tttccccgat gatgtggcaa cgccgtgccg      1980
     cgatgggagg ttctgtagtt agataaatgt atgtaattac tggtgattcg gccataacat      2040
     atgaaaaatg aaggtttttg gacttttctg aatgagctcg acgagaaata gcccccaaat      2100
     actgaaataa gtactcggtt ttctatgatt ttaggcaatg aaatatggca acaccggctt      2160
     ttttgggggg ctttaaatcg gaaaaagttc ttagaggaag gttttgacca cccacgacca      2220
     ttttctgcca aaaaagttta attctggtgt aagatgagtc gcctttttta agccatttta      2280
     aataatgatg aaaaacaaga aaaattctaa aaagtttttt ttaactatga gcgcaaagtt      2340
     tgacatcgac gaaaattggc caaagtgact ctcttacatt cctaatgaac atacttgaag      2400
     gatttttttg tcctccgaag ggatcgttac gaaacagcgc gtcgaatgct gaaaaacccg      2460
     catttttcgc caaaattggc cttcagaccc atgtttaggc cagtggtaga ccccgaaata      2520
     gactggaaat gacaaaacca ttgtgcattc cgtaaaatat agaccttcaa tgaccaaaaa      2580
     atcgcggagt tgaggaattt tagggtgggg ccaaaaaagg cccttaacga tacccctcc       2639
//
ID   ISL2EU-2N1_CFl repbase;    DNA;    INV; 670 BP.
XX
AC   .
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-2_CFl; ISL2EU-2N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-670
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 824-824 (2014).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with ~93% identity.
CC   193/194-bp TIRs.
XX
SQ   Sequence 670 BP; 197 A; 143 C; 138 G; 192 T; 0 other;
     aaaggagggg tgtcaataag gccgtttttt ggcccacgtc agaatcactc caaagtgtgg        60
     tattttcttc ctgccgatgt atctcacaac ctcctagaac cgtttgctgt ccgagcaatt       120
     agaggctgag aacgggcaac ttgaaatctc aaaaatcaat ggggtctttc acatggtagt       180
     agtgccggtc tcatttcagc atgctattgt tgagcttcca tcactatatt ttctcaaaaa       240
     ctactagagt atgcgctgct ttaaatacga aaaggagctc atctgacctt catgcattca       300
     agatagaatc aagcctggta ttttgaacgg attgccatat tactgaacaa tcatgaaata       360
     gtatcccttg ctgatgaatc ggacgatact actataagcc caaacttgat tttaagggat       420
     tagatcattt tgcgaatgca atgtatattc gaaatcacat attgtgaaaa aatatttgag       480
     accggcacta cccaccatgt gaaaaacccc attgattttt gagatttcaa gttgcccgtt       540
     ctcagcctct aattgctcgg acagcaaacg gttctaggag gttgtaagat acatcggcag       600
     gaagaaaatg ccacagtttg gagcgattct gacgtgggcc aaaaaacggc cttattgaca       660
     tccctccttt                                                              670
//
ID   ISL2EU-2N2_BTa repbase;    DNA;    INV; 2784 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-2N2_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2784
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 638-638 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 2784 BP; 882 A; 507 C; 539 G; 854 T; 2 other;
     ggaggggtat cgataagggc cgattttggc cccacttcaa aaaatcatct gaacccatat        60
     tttaagtacc ctagggtagg tgcattctgg cgcaaaatat ttttgcgatt gtgcatcgtt       120
     ttcctgccaa aacagccgac tcaatttttc ggctgaaaaa tggttttaat tttatgacga       180
     gcccaaaaaa gctttgtttc atgagtacgg gaggttcata tacgtaattt tttgcgtact       240
     tttcaatgga acaggcgaaa attgtctaaa cccactttta aggggtcatt ctagacattt       300
     tcaacgattt ttggggtttt ttggcaattt ttcacctata actagaaaac ggatgattat       360
     acaacaaaaa cgattgcaga ttcaaaaaga gcgtaaaaaa tccgttagaa atcattggtt       420
     agacattttc tcagcttaaa ctgtcaacac gaaaaacagc tctaaacttg agaaaaccga       480
     aaaaactgca ttttccacga ttattagtct tcatttacac ccagcacaat tttgccacat       540
     caccaaaatt taacagatta aagttacata ccagtacatg aaacacgcca aaaattacgg       600
     tgtggaaaaa ttgtgctcat agttaaaaat ggacttttgt tgaatggaac catccttgaa       660
     taaaagatga aaattctcta actctccggg aagattcgcc aatcattcat gggatacctg       720
     tatccgggta attttttgcg tactttcgat tgggacgagt gaaaatggtg aaaaatcatg       780
     ttaagtgggc cattcagaga atttttcaag attttagggg ggttttgggg tttttctgtg       840
     ggggggggta ggggttgttg gggggcttgg agagcatttt ttgtttgtaa tacaccaaaa       900
     aaataacaaa ttcagaaaga acgcgaaaaa ttcgatagga ttcgatactt gacactctct       960
     ctcagcttgg actgtccaca cgaaaaacgg tctcaaactc gagaaactgg aaaaaacggc      1020
     cttttctcca gctccccagt cataatttac atcctggtca cttaacaggt tagatcgtta      1080
     agcagtatac aaggtgtaac aactaagtga cgacaaactt ccaggggttg ttccatggct      1140
     caaaacaagc agaaaagtcc cgtaccaaaa tcctctacga tgcgtggttc tcgagtttcg      1200
     gggagttcaa tttttgaaaa aaataccgca cgtgttcaga tatgacgtca cagtggctgt      1260
     cctaattgtc ggaaccgaaa aaaattgtgg tttcgtaaag tgmtcatcaa tagcttaaca      1320
     aaaggtattt tcgttttttt tttcgtaaaa cccctcttaa tggagttatt gaccgtaaaa      1380
     aaaataccgt attaccgcac gtcgcaaata aagttggtca ggacgtacgg taaaacggta      1440
     ttttttttaa cggtcaataa ctccactagg ttttattgaa gaaataccag agggtggttc      1500
     gggtgtgtat gcagaaggca gatataaggc ccttatttaa ttttttaact gtaatgcgat      1560
     gtattttagt actaagtata cagtttgtat atgattgttc agaataaagt gacttgttta      1620
     ataagaaaga aataaatgaa tgaataatta taataaaaaa aatttaaaaa tatctccatt      1680
     agagggggtt ttacgaaaaa aaaacgaaaa aaccttttgt taagctattg atgtaaatta      1740
     tgactgggga gctggagaaa aggccgtttt ttccagtttc tcgagtttga gaccgttttt      1800
     cgtgtggaca gtccaagctg agagagagtg tcaagtatcg aatcctatcg aatttttcgc      1860
     gttctttctg aatttgttat ttttttggtg tattacaaac aaaaaatgct ccccaagccc      1920
     cccaacaacc cctaaccccc cccccacaga aaaaccccaa aaccccccta aaatcttgaa      1980
     aaattctctg aatggcccac ttaacatgat ttttcaccat tttcactcgt tccaatcgaa      2040
     agtacgcaaa aaattacccg gatacaggta tcccatgaat gattggcgaa tcttcccgga      2100
     gagttagaga attttcatct tttattcaag gatggttcca ttcaacaaaa gtccattttt      2160
     aactatgagc acaatttttc cacaccgtaa tttttggcgt gtttcatgta ctggtatgta      2220
     actttaatct gttaaatttt ggtgatgtgg caaaattgtg ctgggtgtaa atgaagacta      2280
     ataatcgtgg aaaatgcagt tttttcggtt ttctcaagtt tagagctgtt tttcgtgttg      2340
     acagtttaag ctgagaaaat gtctaaccaa tgatttctaa cggatttttt acgctctttt      2400
     tgaatctgca atcgtttttg ttgtataatc atcmgttttc tagttatagg tgaaaaattg      2460
     ccaaaaaacc ccaaaaatcg ttgaaaatgt ctagaatgac cccttaaaag tgggtttaga      2520
     caattttcgc ctgttccatt gaaaagtacg caaaaaatta cgtatatgaa cctcccgtac      2580
     tcatgaaaca aagctttttt gggctcgtca taaaattaaa accatttttc agccgaaaaa      2640
     ttgagtcggc tgttttggca ggaaaacgat gcacaatcgc aaaaatattt tgcgccagaa      2700
     tgcacctacc ctagggtact taaaatatgg gttcagatga ttttttgaag tggggccaaa      2760
     atcggccctt atcgataccc ctcc                                             2784
//
ID   ISL2EU-2_BTa repbase;    DNA;    INV; 4995 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-2_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4995
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 660-660 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. TSDs are 0-bp long. Target are AAATTT, TE inserted
CC   between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1701..3809
FT                 /product="ISL2EU-2_BTa_1p"
FT                 /translation="MPKSICCDACGALALKSKLRSIPGEQVLECLKKQNSS
FT                 VTIGSQICLKCYKSVAKKETASPLVGRRRNSTEPSCSSAPQPIPEHTLCKN
FT                 ETTSSAGKMKLHVGRASSSHRNCIVCRSSKPEVTRVCIPAMARYKFFVDKG
FT                 YIIPAGARCCEGHLISSYLRPDVDIQKQSEECSLDAEEIKELLNGVRSIAA
FT                 RKGLDFDTPGVLTVEDYWNLTGVTIQRFDTILNSISSHIRDSKNRTSRTSL
FT                 AIFLMKMRTGLSYNVLSTLFSVSKSVIQRSMRNVREALMSEFVPKHLGLAS
FT                 ISRDTLINEHTRDFAKSIFDDGNGNNKAIIVADGTYVYIEKSSNYKLQRRT
FT                 FSMHKGRPLVKPFIIVSTTGLVLDVLGPYFADGKNNDANIITSHMVSSADG
FT                 LRSWLKEGDVIVVDRGFRDAVGFLEDLDLIVKMPQFLEKNRKQHSAEEANA
FT                 SRLVTSVGWVVEAVNGTIKTFKALAHTMPNSQIPYIGDYVRIICSFINAFR
FT                 PSRIGDEDENSTIIAQRMLQLSKNENPLQGKVQNWSNNKATWTQLDSESLN
FT                 DFPRLTLDELRLITMGIYQLKQAKSYAAEHENDDGLYELFVHRECTDVIRV
FT                 KLQSRHVSAKKYHLWIQYHPIGVSGWYCQCNVGARVVGCCAHIASVMWYLA
FT                 HHRHKTEAQKTKRLSDEYGSFLQDSATVAPNEWSDGEDEEPDEEATDEDAT
FT                 GEE"
XX
SQ   Sequence 4995 BP; 1476 A; 1007 C; 1106 G; 1404 T; 2 other;
     ggaggggtat cgttaagggc cttttttggc cccaccctaa aattcctcaa ctccgcgatt        60
     ttttggtcat tgaaggtcta tattttacgg aatgcacaat ggttttgtca tttccggtct       120
     atttcggggt ctaccactgg cctaaacatg ggtctgaagg ccaattttgg cgaaaaatgc       180
     gggtttttca gcattcgacg cgctgtttcg taacgatccc ttcggaggac aaaaaaatcc       240
     ttcaagtatg ttcattaggg atgtaagaga gtcactttgg ccaattttcg tcgatgtcaa       300
     actttgcgct catagttaaa aaaaactttt tagaattttt cttgttttwc atcattattt       360
     aaaatggctt aaaaaaggcg actcatctta caccagaatt aaactttttt ggcagaaaat       420
     ggtcgtgggt ggtcaaaacc ttcctctaag aactttttcc gatttaaagc cccccmaaaa       480
     agccggtgtt gccatatttc attgcctaaa atcatagaaa accgagtact tatttcagta       540
     tttgggggct atttctcgtc gagctcattc agaaaagtcc aaaaaccttc atttttcata       600
     tgttacggcc gaatcaccag taattacata catttatcta actacagaac ctcccatcgc       660
     ggcacggcgt tgccacatca tcggggaaaa atcgagaaaa gtccacgtct ccctggattt       720
     gagccatttt ttcggattat gcggatggaa taaagttgaa agacttaaat tgcagtattc       780
     agagatgcaa gtggatcata ccttgtgccg gtattcatta ttttaatata ttgcgcttat       840
     agacaaccca tattcttacg atttctaggc acgatatttg cgcaagagga tgcgactttc       900
     aaacattggc cgtgatctga agtccgaaag aaagtaagcc atgtgtcaga atcgcgagtc       960
     ctcaatgctg aatttttacc cgccctgaca accaccacca tcccccctcc ctcccccagc      1020
     cctcttatcg gcagcgattg ttcagaattc tacttcctga ttttttttct caatttgcat      1080
     acttagtata ggcacaaagc acatggagga tgaattatga tatgtgtgag atttaggatg      1140
     cttaatatta tttcctttag aagacatatg attgcacgta tacaaagtcg cgcatatcgc      1200
     gtattgcgaa tacgctgatt ttcagtctgc gagatgctta gagtgacaat taccgtagat      1260
     gtatattaac ggttatcttt acggtagact aaagatagac tgattactgg gtgttatagc      1320
     gtatctccaa tccaccgaat cttcaaatct tcgtatctca gtaagtactt catcactaac      1380
     aactagtaaa tatttacatc agatgcggtt gattcgcacc tgaaattgag gtttcagtgt      1440
     gctcgcgatc gcgtttcagt cagcttatcc cgcagatttt ttcggatagt ttgaagttta      1500
     gtgctccttt tcttctgttt tttacttcaa aacgtgcttc tctaagcggt ttttttaccc      1560
     cgattatcag cctatcggtt tgtcgttttt cccggtcgtg agagagactt taaagtgcgt      1620
     gacttacata ttattcggga catagtgtta actgatttga ggaactcttc gaatattgtg      1680
     ttgaactgtt ttattggaaa atgccaaaaa gcatatgttg tgatgcctgt ggagccctcg      1740
     ctctgaaatc taagttgcgt tccatccctg gtgagcaagt gcttgagtgc ttaaaaaaac      1800
     aaaactcatc tgtaactatc ggaagtcaga tttgtttgaa atgctacaaa tcagtggcga      1860
     aaaaagaaac cgcgtcacct ctcgtaggac ggagaaggaa ctctactgag ccatcatgca      1920
     gttcagcccc tcaacccatt cccgagcata cactttgtaa aaatgaaact acctcatcgg      1980
     caggaaagat gaagcttcat gttggaagag cttcttcgag ccatcggaat tgtattgtat      2040
     gcaggtccag caaacccgag gtaacccgag tatgtattcc tgctatggct agatataaat      2100
     tttttgttga taaaggctac attattcctg caggagcacg atgctgtgag ggtcatctga      2160
     tctcatcata tttgagacct gatgtcgaca tccaaaaaca gtctgaggaa tgttctctcg      2220
     atgctgaaga aattaaagag ttactaaatg gcgtgaggag tatagcagcg cgcaaaggtt      2280
     tagactttga tacgcctggt gttctgactg ttgaagatta ctggaatttg accggggtaa      2340
     caatccaacg gtttgacaca attctaaaca gtataagtag ccacatacga gacagtaaaa      2400
     atagaactag tcgtacaagt ttagcaattt ttttgatgaa aatgaggaca ggtctatcct      2460
     ataacgtcct ctcgactttg ttttcagttt caaaaagtgt tattcagaga tccatgcgta      2520
     atgtccgtga ggcactcatg tcagaatttg ttccgaaaca cctgggtttg gcaagtatct      2580
     cgagggatac tttaattaat gaacacaccc gagacttcgc aaaaagcatt tttgacgatg      2640
     gtaacggtaa caacaaggcc atcattgttg ctgacggcac atatgtttac attgaaaaga      2700
     gcagtaacta taagctgcaa agaagaacat tctcaatgca taaaggccga ccgttggtta      2760
     aacctttcat aattgtcagt accacaggtc ttgtcttaga cgtcctcggt ccttatttcg      2820
     cggacggtaa gaataacgac gccaacatca tcacctcgca catggtctcg tcggcagatg      2880
     ggctacgatc ctggttgaag gaaggagacg taattgttgt agaccgtggt ttccgagacg      2940
     ctgtgggatt tttagaggat ttagacctga tagtaaaaat gccgcagttc cttgagaaga      3000
     atagaaaaca gcattctgct gaagaggcca acgcgtccag gttggtgacc tctgtgggat      3060
     gggttgttga agctgtaaac gggaccatca agacttttaa ggccttagct catactatgc      3120
     ccaactctca aatcccgtac ataggtgact atgtcagaat tatatgcagc ttcatcaacg      3180
     catttagacc atccagaata ggggacgaag atgagaattc caccatcatt gcgcagagaa      3240
     tgttgcagtt atctaaaaac gaaaatccac tgcaaggaaa agtgcagaac tggtcaaaca      3300
     acaaagcgac atggactcag cttgactcag agagcctcaa tgattttcct aggcttactt      3360
     tggacgaact gcgcctgatc accatgggga tatatcagct gaaacaagcc aagtcatacg      3420
     cagctgaaca cgagaacgat gatgggttgt atgagctatt cgttcaccga gaatgcaccg      3480
     acgtcatcag ggtgaaattg cagagccgcc atgtatcagc caaaaaatac cacctttgga      3540
     tacagtatca ccccataggc gtttctgggt ggtattgcca gtgcaatgtg ggcgctagag      3600
     tcgtcggctg ctgtgcgcac atcgcatctg tcatgtggta cctcgctcat cacagacata      3660
     agacagaagc acaaaaaacc aagcgtttgt cagatgagta cgggtcattt cttcaagatt      3720
     ccgcaacggt agctccaaat gagtggtctg atggagagga cgaggaacct gatgaagagg      3780
     cgacagatga agatgcaact ggagaggagt gaaggaaacc tgagaagaga ggagggggca      3840
     acgagggcag cagtattatt cgagggtaag gacaatttta aatgcaagtt taatgttgct      3900
     aaatgaaatg tgcgaaatgc gatattaata atatatgcga taataaatgc gaattcaggt      3960
     ggagtagata aaaagttact gttttaaatt aatttaggga agcagaattc tgaacaatcg      4020
     ctgccgataa gagggctggg ggagggaggg ggatggtggt ggttgtcagg ggacttcaga      4080
     tcacggccaa tgtttgaaag tcgcatcctc ttgcgcaaat atcgtgccta gaaatcgtaa      4140
     gaatatgggt tgtctataag cgcaatatat taaaataatg aataccagca cgaggtatga      4200
     tccacttgca tctctgaata ctgcaattta agtctttcaa ctttattcca tccgcataat      4260
     ccgaaaaaat ggctcaaatc caggggaacg tggatttttc tcgattttcc cccgatgatg      4320
     tggcaacgcc gtgccgcgat gggaggttct gtagttagat aaatgtatgt aattactggt      4380
     gattcggcca taacatatga aaaatgaagg tttttggact tttctgaatg aactcgacga      4440
     gaaatagccc ccaaatactg agataagtac tcggttttct atgattttag gcaatgaaat      4500
     atggcaacac cggctttttt ggggggcttt aaatcggaaa aagttcttag aggaaggttt      4560
     tgaccaccca cgaccatttt ctgccaaaaa agtttaattc tggtgtaaaa tgaatcgcct      4620
     tttttaagcc attttaaata atgatgaaaa acaagaaaaa ttctaaaaag ttttttttaa      4680
     ctatgagcgc aaagtttgac atcgacgaaa attggccaaa gtgactctct tacatcccta      4740
     atgaacatac ttgaaggatt tttttgtccg ccgaagggat cgttacgaaa cagcgcgtcg      4800
     aatgctgaaa aacccgcact tttcgccaaa attggccttc agacccatgt ttaggccagt      4860
     ggtagacccc gaaatagacc ggaaatgaca aaaccattgt gcattccgta aaatatagac      4920
     cttcaatgac caaaaaatcg cggaattgag gaattttagg gtggggccaa aaaaggccct      4980
     taacgatacc cctcc                                                       4995
//
ID   ISL2EU-2_CFl repbase;    DNA;    INV; 3326 BP.
XX
AC   AEAB01014403;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-2_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3326
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01014403; Positions    4702    8027.
XX
CC   Single copy. It is an autonomous counterpart of ISL2EU-2N1_CFl.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1215..1314,1379..1780,1915..3059)
FT                 /product="ISL2EU-2_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MILLQHLRIKQHSFLSEDKSQHPGLHSIRDEMHHRGI
FT                 LIPPNARCCMRHLENDFLSKTATDDIEVKSNYSILDDKTLCGLLQNLRSVA
FT                 SRKGLNFDYPPALTDDDYYNLTGLKKDQFDSVLASISGYIRSTSGRSPRTC
FT                 LVLLLMKLRTGLSLSVLSTLFALQKRRVGGEDVCILVADGTYMYIEKSSNY
FT                 KFQRRTFSLHKGRSLVKPMILVSSTGYILEVFGPYFADGKNNDASILTSIM
FT                 RSDASRLRSWLQPNDVFVVDRGFRDCLEMLEDLGLITKMPHFLREGSQHTT
FT                 SEANESRLVTKIRWVIEAVNGLLKKWKALDHVFPNSQIPYVGDYVRIVSAL
FT                 CNAFRPPRISDDPNDTIAERMLRLSQMLNLLQERVEREGWSRKRVMWQPVV
FT                 ADSIPDFPQLTLHELIHLTIGSYQLKQAQSYAEEHTAGDGMYQLFVHRQER
FT                 NILHLQIQSRHTSSKVYNLWIEYSQGINPIISWYCQCKVGARTVGCCAHVA
FT                 SVLWYLGYLRHSERLQKRPSQSYAQYIQDVAKNISDWSDNKSGEDGHQSND
FT                 E*"
XX
SQ   Sequence 3326 BP; 951 A; 707 C; 647 G; 1021 T; 0 other;
     aaaggagggg tatcaataag gccgtttttt ggcccacatc agaatcactc caaagtgtgg        60
     tattttcttc ctgccgatgt agctcacaac ctcctagaac cgtttgctgt ccgagcaatt       120
     agaggctgag aatgggcaac ttgaaatctc aaaaatcaat ggagtctttc acatggttgt       180
     agtgccggtc tcatttcagt atgctattgt tgagctttca tcactatatt ttctcaaaaa       240
     ctactagagt atgcgctgct ttaaatacga aagaaagctc atctgacctt catgcattca       300
     agataaaatc aagcctgata ttttgaacgg attgccatat tactcaacaa tcatacaata       360
     gcatcccttg cgatgaatca gacgatacta ctgtaagccc aaacttgatt ttaagggatt       420
     agattatttt gcgaatgcaa tgtatattcg aaatcacata ttacgaaaaa atatttgaat       480
     tccaaacctc agtgaggaga tgtaaagaat attttccgga acggacttct ttttcatgga       540
     atgcaatgct cagcttcgcg aagcatttat taagattggt atcttcattc agattattgt       600
     gttctgctgc atagtatgta cgacaaataa tcaattgttc cattgtaatt aacaattcat       660
     gtatttccaa aacgagaata gtactatgca ctatccacat tttcagtagc tttgttctct       720
     tgtttttctt cccgtcattc gtttgtcttc acgaaatcag gacccaacgc attagttctt       780
     cacctcattc aatcaacggt ttctcatcaa cgataaaaac aatcctagag cacaaatagt       840
     attgtgcact cttcatctga ccagtagctt agttgttctg tctccttccc ggcatttgtt       900
     cctctcaaca gattcaacaa tcgacttgga tacacagttg tttttagtgc gtttttgaac       960
     tggaagcatt gtatgtgtca ccgcattatt ttcatcgcac ttatgcttaa atgaatcgtc      1020
     tttatcaagg atcagcgcac tttcagagca taaactgtgt gcgctaatct tcagtagctt      1080
     agtttctcgt tttcattact tttcattgct tatttttttg tcactattac gttaatatcc      1140
     attatccgat tgcattatga gcaatcgtac aagcagcatt tcacgtacta tcagtactga      1200
     atctgttgct acaaatgata ctcctccaac atctcagaat caagcaacat tccttcctca      1260
     gtgaagataa gagtcagcat ccagggctgc acagcatccg ggacgagatg catcgtatgt      1320
     aagaaggcta agaaactgac tcgtatatct cctatggcga gaacacaaat attcatagac      1380
     agaggtatac tcattccgcc aaatgctcga tgttgtatga gacacttgga aaatgatttt      1440
     ctcagtaaaa cagcaacaga tgatatcgaa gtaaagtcaa actattcgat tctagacgat      1500
     aaaactcttt gtgggttgtt acaaaactta cgttcagttg cttctcggaa aggacttaat      1560
     tttgattatc cacctgctct tactgatgac gattattata atctgaccgg gttgaagaaa      1620
     gatcaattcg actccgttct tgcttcaatc tctggttata ttagatctac atctggacgt      1680
     tctcctcgga cttgtcttgt cttgctttta atgaaactac gtactggtct ttccctttca      1740
     gttttgtcta ccttattcgc tcttcaaaag aggagagtag gtagggcgat agctgcagct      1800
     cgtactgctc tcctttcaat gtttgtcccg aactttttgg gaacaaatca tctctctctc      1860
     gagaagattt tatcacaaag catacgagaa ccatggctaa aacgctcttc gcaggtggag      1920
     aggatgtctg tatccttgta gccgatggta cgtatatgta tatagagaaa agttctaatt      1980
     acaagttcca gagacgaact ttttcactcc acaaaggacg ttcactagta aaacccatga      2040
     ttcttgtaag ttcaacagga tacatcttag aagtttttgg accttacttc gcggatggta      2100
     aaaataatga tgcaagcatt ttgaccagca taatgcgatc tgacgcgagc aggctccgat      2160
     cttggttgca acctaacgat gttttcgtgg tggatcgtgg tttcagagat tgcctcgaga      2220
     tgttggaaga tctaggtctc ataactaaaa tgccccattt cctccgagaa ggttcgcaac      2280
     atactacatc tgaggccaat gaatcacgcc tcgtgactaa aatacgctgg gtgatagagg      2340
     cggttaacgg tctccttaag aagtggaaag cattagatca tgtattccca aattctcaga      2400
     taccgtatgt gggagattac gtgcgcattg tatccgctct ttgcaatgct ttcagaccac      2460
     cgaggatcag tgacgatcca aatgatacaa ttgctgagcg tatgttgcgt ctatcgcaaa      2520
     tgctgaacct cctccaggaa agagttgaaa gagaaggttg gtccaggaaa agggtgatgt      2580
     ggcaacccgt agttgcggat tcaatccctg atttccctca attgacctta cacgagttga      2640
     ttcatctgac cattggctca tatcaattga aacaagcgca atcttatgca gaggagcaca      2700
     cagctggaga tgggatgtat caactgttcg tccataggca agagagaaat atcttacatc      2760
     tccagataca atcgcgccat acatcatcga aggtgtataa cttgtggatt gaatatagtc      2820
     aaggaatcaa tcccatcatt tcctggtact gccaatgcaa ggtcggtgct agaaccgttg      2880
     gttgttgtgc acatgtcgca tccgtccttt ggtatttggg gtatttaaga cactctgaaa      2940
     gacttcaaaa acgaccatca caatcctacg cacaatacat ccaagatgta gctaagaaca      3000
     tttcagactg gtctgacaat aagtcaggtg aagatggtca tcaatctaat gacgaataat      3060
     cttctaattg aagattttcc ggcgcctact cccaattcct caattgactg ttcactttct      3120
     cattgtgaat tcagagaata ttgtaaaccc tattgatttt tgagatttca agcctttttt      3180
     gccgattttg cccattctca gcctctaatt gctcggacag caaacggttc taggaggttg      3240
     tgagctacat cggcaggaag aaaatatcac actttggagt gattctgacg tgggcgaaaa      3300
     aacggcctta ttgacacccc tccttt                                           3326
//
ID   ISL2EU-3N1_CFl repbase;    DNA;    INV; 780 BP.
XX
AC   .
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-3_CFl; ISL2EU-3N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-780
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 825-825 (2014).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
CC   306/307-bp TIRs. It is a non-autonomous derivative of
CC   ISL2EU-3_CFl.
XX
SQ   Sequence 780 BP; 209 A; 161 C; 195 G; 215 T; 0 other;
     aaaggacccc gcaccattct tatgggaaaa tgtctttcgg tggatttcgc taaattttgg        60
     atatgttgta gttctcgtca ttctgaacaa aagatacaat gggcacaact tgatcctatg       120
     agccgtttcc gcgctacaag ccctggaaag tgcagattta acatataaag atatcgattt       180
     ttcgactcga taatttcgat caaatatgcg tgcgtgcccg catgcgtgtg cgtgtgtgtg       240
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgggtgtgt gtgtgtgtgt gtgtgtgtgt       300
     gtgtgtgggt gtgtgtgtgt gtcagtgtgt gagtgtgtgc gtacaacgga agatgtaatg       360
     taaatgttat tgtgataaac acacacatac acagagacac acacagcaga gagggtttgg       420
     agtcataaaa tactacggaa gtgacgaacc gtggggtcct tatctctgct gtgataccca       480
     agcgcgcgcg cgcacactca cacactgaca cacacacaca cacacacacc cacacacaca       540
     cacacgcacg cacatgcatg cgggcacgca cgcatatttg atcgaaatta tcgagtcgaa       600
     aaatcgatat ctttatatgt taaatctgca ctttccaggg cttgtagcgc ggaaacggct       660
     cataggatca agttgtgccc attgtatctt ttgttcagaa tgacgagaac tacaacatat       720
     ccaaaattta gcgaaatcca ccgaaagaca ttttcccata agaatggtgc agggtccttt       780
//
ID   ISL2EU-3_BTa repbase;    DNA;    INV; 3721 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-3_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3721
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 661-661 (2018).
XX
DR   [1] (Consensus)
XX
CC   Two copies in the genome; this is one of them. TSDs are 0-bp
CC   long. Target are AAATTT, TE inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1196..3229
FT                 /product="ISL2EU-3_BTa_1p"
FT                 /translation="MPFGVQYSCYVCLRASQNSREFRRLITDDPHLSEDRR
FT                 RIATLRRDELKHEPAHIVADTRLCANCDKSVGNEVKASQDPNCFRLNVVFG
FT                 VGGRSCVVCQNQGNQVRLTLNCRVNVFVTKNIFLPSGCRSCPAHLNEDGFM
FT                 HPESQSQLRSVNRPHVIPSRELMSFLQGMRNAAKNLPITDFEDIDNFTEAD
FT                 FSVVAPVKKNQFEELFLFCDPVLQNDGTLRYVRQKDLLLFLCKLRQGLSDS
FT                 FLKVIFNYPTRQCVSRKIALVRESLMQKFVPQNIGFASITREAFIQSHVTD
FT                 FHNELYNPTPGNRKAIVYVDGTYSYINKSSNFRVLRQSFSPHKHEHLIKPT
FT                 LIVAPDGFILSIQGPHFADSHNNDAKILSREFEVDPAMESWFEDGDIFIVD
FT                 RGYRDVVPYLEDSGFTVEMPNLLEKGNKQFSTNEANESRLVTKTRWIVEAR
FT                 NGHIKSIFKFLGDIIPMPHLTHLGEFYKIAGAIINKYHDTILMEEANPELA
FT                 RELLAKAQEVNIVQARVEAEGLCRRNALWRRLDHHQIQHFPRFNLAELKKL
FT                 THGSFQLKLSPSYIQDKTQRDGDEELQVDCHINEPGFLRVRIFSRFQNASK
FT                 HQIFIAYIPSNDPQVLEETDKVQGYYCTCKSGARTLGTCSHVASVIWFLGF
FT                 AAHQENVRYPPTSLLGSVKDAANRQHENS"
XX
SQ   Sequence 3721 BP; 1050 A; 819 C; 799 G; 1053 T; 0 other;
     ggaccccgca cggttcttat ggaaaatggc cctctgtcaa atgcgttgaa acttcagtat        60
     gttgtgcagc atgtcatcat gaacaaaagt tccaatgggc caaacaagat cccatgtgcg       120
     gttttcgaga tattcctcgt ttttggtgtg tttcgcctct attccgcccc ctcgccggag       180
     aaccgaacta ctgtgcgtcg ctactcggat gctctccctt cctgccccgc acggccctct       240
     ccgcttcccc gacctcctag ctcatgaagt ctcggacgcg ccgctctcgt ggcattgttt       300
     acacttgccg tcttttcctt tcgtctctct cgttcccctc cgccaatctt ctcgttttca       360
     atcaaaaaga cagcgtttgt caagatttta tgtaaacaaa ggttcctctc tgtgtatgac       420
     acattcttct ttaaaatgca gtctttataa acttattttt tttttattat ttatttcgct       480
     tggccgatgt taacatggtg tactgactcc ctcctaggta ctacggtctc cgttttctac       540
     tttttttaaa atttcgcttc ggttatgcaa aaacttggca caaaagaagc aaaagcttct       600
     tgccaggaag aatatattta tgtaccgcaa ttctaataaa aactctggca atatgaaatt       660
     gttttcgctc aaataaaccg gacacgacgt gcaactacta ggaactacta gaggggtcaa       720
     aacattttgc ctccaaagaa atatacatta atcgaacaat ccaaagttag gtctacaata       780
     ttgcaggaat aacggcacaa cacgaagtag gtgcattcat acaagccaac attgcacaag       840
     cagcatttcg aatgaaagta ttgggtaaaa ccgaaaattc gctgataacg aaagcatcgg       900
     cggtatcatc ggctgatgtt atcatccaag gtgcgttgag gcacctttga taaacttacg       960
     ttgtgatcac agaaatcagt tcatcagatt ttccacgccg atttagtatc tatcgaatga      1020
     gttacgaagt gcgtacgcga tttactcatc agctatcaca cgcaggattt ttcgaacctc      1080
     agttttcgga atttcggttt cttcggttat cttttttggt ttcctgttca atcgaattta      1140
     gtaaatggat tcgattttgt tcatttcggc ttcttataaa ttctgctgag tttcaatgcc      1200
     gttcggggtt caatattcat gttatgtgtg cttgcgagca tcacaaaata gtcgcgagtt      1260
     tcggcgttta attacggacg atcctcacct gtctgaggat aggagacgca tcgcgacgct      1320
     caggagagac gagctgaagc atgagccggc ccatattgtc gcggacacac gtttatgtgc      1380
     aaattgtgat aaaagtgttg gaaatgaagt gaaagcttca caagacccaa attgtttcag      1440
     actaaatgtc gttttcggtg taggtgggcg atcttgtgtc gtgtgccaga atcagggcaa      1500
     tcaggtgcgc ctaactctga actgtcgtgt caatgtgttt gtcaccaaaa atattttcct      1560
     gcctagcggt tgcaggtctt gtcctgcaca cttgaacgaa gatgggttca tgcatcctga      1620
     gtcccagtca caattaaggt ccgttaatcg tcctcatgtt attccgagca gagagctaat      1680
     gtccttctta cagggtatgc gaaacgccgc aaaaaacttg cccataactg actttgaaga      1740
     cattgataac ttcaccgagg cagatttctc cgttgtagct cccgttaaaa aaaaccaatt      1800
     cgaagaactt tttttatttt gcgatcctgt gctgcaaaat gacggaacat tgcggtatgt      1860
     aaggcagaaa gatcttctcc tttttttgtg caaattgaga cagggcctgt ccgatagctt      1920
     cttgaaagtt atatttaatt accccacgag acaatgcgta agccgaaaaa tcgctctagt      1980
     gagagaatca ctgatgcaaa aattcgtccc ccaaaatatt gggtttgcat ctataactcg      2040
     agaggccttt attcaaagtc atgttacaga ttttcacaat gaactttaca accctactcc      2100
     aggaaatcgt aaagcaattg tatacgtaga tggaacttac tcttatatta ataaaagttc      2160
     aaacttccgt gttcttcgcc aatcgttctc gcctcataaa catgaacacc tcatcaaacc      2220
     tactttaatt gtagctcctg atggatttat tttgagtatt caaggcccgc attttgctga      2280
     cagtcacaat aacgacgcaa aaatattgtc tcgggaattt gaagttgatc cagcgatgga      2340
     aagttggttt gaagatggcg atatctttat tgttgaccgg ggttaccgtg acgtcgtacc      2400
     ttacctcgaa gattctggat ttaccgttga aatgccaaat cttctcgaaa aaggcaataa      2460
     gcaattctct accaacgagg ccaacgagtc ccgactggtg acgaaaacaa gatggattgt      2520
     ggaagcacga aacggacaca tcaaatcaat ttttaagttc cttggagata ttattccaat      2580
     gcctcatcta acgcatttgg gagaatttta caaaattgca ggtgctatta tcaacaaata      2640
     tcatgataca atattaatgg aggaggcaaa ccctgaatta gcccgcgaac tgttggcaaa      2700
     agcgcaagag gttaatattg tgcaagctcg ggtggaggcc gagggattgt gccgacgaaa      2760
     tgcactgtgg agacgtctag atcatcatca aattcaacat tttccacgct tcaatttagc      2820
     cgaacttaag aaattaacac acggttcatt ccaactgaaa ttatcaccat cgtatattca      2880
     agataaaact caaagagacg gcgatgaaga gctccaagtt gattgccata tcaatgaacc      2940
     aggcttctta cgggtacgaa ttttctccag atttcaaaat gcctcaaaac atcagatctt      3000
     catagcgtac ataccgtcaa atgatccaca agttcttgag gaaactgaca aggtacaagg      3060
     gtactattgc acttgcaaat cgggcgcaag aactctcggc acctgtagcc acgtagcaag      3120
     tgttatttgg ttccttggat ttgctgcaca ccaagaaaat gtccgttacc ccccaacatc      3180
     tctcctagga tcggtaaagg atgcagccaa caggcagcac gaaaattctt aactttcgca      3240
     tccagttaaa ggtaacaata tatttgagtc attaataagt attttctttt tcttttattt      3300
     aatcgttgtg gttgttacat tctttttcct ggtggggcaa cagattcacc gcctttttga      3360
     tcgagtacgg gaagattggc ggaggggaac gagagagacg aaaggaaaag acggcaagtg      3420
     taaacaatgc cacgagagcg gcgcgtccga gacttcatga gctaggaggt cggggaagcg      3480
     gagagggccg tgcggggcag gaagggagag catccgagta gcgacgcaca gtagttcggt      3540
     tctccggcga gggggcggaa tagaggcgaa acacaccaaa aacgaggaat atctcgaaaa      3600
     ccgcacatgg gatcttgttt ggcccattgg aacttttgtt catgatgaca tgctgcacaa      3660
     catactgaag tttcaacgca tttgacagag ggccattttc cataagaacc gtgcggggtc      3720
     c                                                                      3721
//
ID   ISL2EU-3_CFl repbase;    DNA;    INV; 3177 BP.
XX
AC   AEAB01024655;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-3_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3177
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01024655; Positions    4981    1805.
XX
CC   Single copy. It is an autonomous counterpart of ISL2EU-3N1_CFl.
CC   Both termini are truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           726..2735
FT                 /product="ISL2EU-3_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MAFRNRNRLQCYVCDAIVRPGQLARIDGDDNLNKCEI
FT                 AISRRDANNRPALDITARTRLCVNCNRSILNEIEAIERDPTCLRLNVLTQT
FT                 SSHTCMICNQYANIQRLSVECRVNIFVIRNIYIPETTKCCNIHLDHNGLLL
FT                 QYLLGGLKFVNRPYVIRGQQLQIILQELRRANQNSCSYNDENSFTDEEFKS
FT                 ITPISQNQFRELYTFCDPVSRIDGKGYRYISKRDLLLFLCKLRQGLSDEFL
FT                 KVIFHYPSRQTVSLTIQTVRRSLMQRFVPQNIGFQAITRNEFIERHVTDFA
FT                 NGLYNPQSNEPRIIAYIDGTYAYIHKSSNFRILRQSYCRHKGRHLVKPALI
FT                 VAPDGYILTIQGPYFSDSRNNDAEMLRNEYARDGDAMRAWFQDGDIFVVDR
FT                 GYRDTMPMLEALGIHVKMPPILEPGQRQFSTEQANKSRLVTKTRWIIEARN
FT                 DHIKSVFKFFAQTVIMPHVTNLGDFFRIAGAIINRYHPLVHMEGANFQLAQ
FT                 QLLARAQEPNVVQARVEMENLRTRNARWIRLNHNQVNDFPHLDIDYLRDLT
FT                 VGIYQVYLAAGYIQDRLQREDKEFHIDMLTNEHGFLRVRQYSRFRNATTHQ
FT                 LWIAYNAIHNENNIDDENNIDHKHILGYYCTCQSGARIVGCCAHVASVIWF
FT                 LGYARHQPNIRYLKHLYFIRS"
XX
SQ   Sequence 3177 BP; 1024 A; 614 C; 656 G; 883 T; 0 other;
     ccattcttat gggaaaatgt ctttcggtgg atttcgctaa attttggata tgttgtagtt        60
     ctcgtcattc tgaacaaaag atacaatggg cacaacttga tcctatgagc cgtttccgcg       120
     ctacaagccc tggaaagtgc agatttaaca tataaagata tcgatttttc gactcgataa       180
     tttcgatcaa atatgcgtgc gtgcccgcat gcgtgtgcgt gtgtgggtgt gtgtgtgtgt       240
     gtgggtgtgt gtgtgtgtca gtgtgtgagt gtgcgcgtac aacggaagat gtaatgtaaa       300
     gaaataaaaa taaagtaata tatttgataa agaaatagtc aatgtaacaa gtgttgagac       360
     gtaggttgtc gcctcggcaa taacacacgc gagccgttcg cggaacggtg agatcttcct       420
     tttgatagcg acgtgtgcgc gacggagatc gaacgcgtgc gcgagagaga aggaagatcg       480
     gccctgcgga tcgggcggcg aaatgcgcaa cacgagagat agagatgaat agtatgcgct       540
     gcagacaaac ctccctcacg ctcgctcacg aaggcgtatc tcttttatta attcacacct       600
     aatacagtta aaaattgaag aagaaaaatc tattcttctt cattccattc ttcaactttc       660
     cgtcactcgt agtaaaaaat taatttttaa ctgaaccgat taaatgtttt aaaatcaata       720
     aaatcatggc attcagaaat agaaataggc tacagtgtta cgtgtgtgat gccatagtac       780
     gaccaggaca attggcacga attgacggcg atgataattt aaataagtgt gaaattgcta       840
     ttagcagacg cgatgcaaat aatcgaccag cacttgatat aacagctcgt actagacttt       900
     gcgttaattg caatcgttct attcttaatg aaatagaagc tattgagcgg gaccctactt       960
     gtttgagatt gaacgtattg acacaaacct ctagtcatac gtgtatgatc tgtaatcagt      1020
     atgctaatat acagagatta tcagttgagt gccgagtaaa tattttcgtc ataaggaata      1080
     tttatatacc tgagacgact aaatgttgca atatccactt agatcataat ggtttgttgt      1140
     tacaatactt gttgggtgga ttaaagtttg ttaacagacc gtatgtgata cgtggacagc      1200
     agttacaaat tattctgcaa gaacttcgaa gagctaatca gaacagttgc tcatataatg      1260
     atgaaaatag ttttactgac gaagagttta aatcgataac ccccatatca caaaatcagt      1320
     tccgcgaatt atatacattc tgtgatccag tatcgcgaat agatggaaag ggttacagat      1380
     acatatcaaa aagagatctt ctgttatttc tctgtaaact acgtcaaggc ctgagtgatg      1440
     aatttttgaa agtcatcttt cattatccta gcagacaaac cgtaagttta actatccaaa      1500
     cagtgagaag atctcttatg caacgattcg tacctcaaaa tattggtttc caagcaataa      1560
     cgagaaatga atttattgaa agacacgtta ccgatttcgc taatggcctg tacaatccac      1620
     aatccaatga acctagaata attgcttata ttgacggtac ctatgcttac atacacaaaa      1680
     gcagtaactt ccgtatctta aggcaatctt actgtcgtca taaaggtcgc catttagtta      1740
     aacctgctct tattgtggct ccagatggct acatactaac aatccaaggt ccatactttt      1800
     cagattcaag gaataatgat gcggagatgc ttcgaaatga gtatgctaga gatggtgatg      1860
     cgatgagagc atggtttcaa gatggagaca tttttgtagt tgatcgcgga taccgggata      1920
     ctatgcctat gctcgaagcc ttgggaattc atgtaaaaat gccacccatt ctcgagcctg      1980
     gacaacgtca attttccact gaacaagcaa acaaatcacg tttagttacc aaaactaggt      2040
     ggataattga agctagaaac gaccatataa aaagcgtctt caagtttttt gcacaaaccg      2100
     ttattatgcc gcatgtcacg aatctcggtg atttcttccg tatagcagga gcaattataa      2160
     ataggtatca tccattggta cacatggaag gtgctaactt ccaattagct caacaattat      2220
     tagctagagc ccaggagcca aacgtcgtgc aagctcgagt agaaatggaa aatcttcgta      2280
     cgagaaatgc aagatggatt cgcttgaacc acaatcaggt taacgatttt ccacaccttg      2340
     acatagatta ccttagagat ttgaccgttg gaatatatca ggtatatctt gcagctggat      2400
     atatccaaga taggcttcag cgagaagaca aagaatttca tatagatatg ctcactaatg      2460
     aacatggctt tttgcgagta cgacaatatt cacgttttcg gaatgcgaca acgcatcaat      2520
     tatggatagc gtacaacgct atccataatg aaaacaatat tgatgatgaa aacaatatcg      2580
     atcataaaca tattcttgga tattactgta cttgccaatc cggagcaaga attgttggat      2640
     gctgtgcaca cgtagcaagc gtaatctggt ttctgggcta cgcaagacat caaccaaata      2700
     taaggtacct gaagcatctc tatttcattc ggtcttagat gcaggtcaga gaccactgca      2760
     gcaaaatcca aacgaccaaa tatttattaa tgaataataa tgttattgtg ataaacacac      2820
     acatacacag agacacacac agcagagagg gtttggagtc ataaaatact acggaagtga      2880
     cgaaccgtgg ggtccttatt tctgctgtga tacccaagcg cgcgcgcgca cactcacaca      2940
     ctgacacaca cccacacaca cacacgcatg cgggcacgca cgcatatttg atcgaaatta      3000
     tcgagtcgaa aaatcgatat ctttatatgt taaatctgca ctttccaggg cttgtagcgc      3060
     ggaaacggct cataggatca agttgtgccc attgtatctt ttgttcagaa tgacgagaac      3120
     tacaacatat ccaaaattta gcgaaatcca ccgaaagaca ttttcccata agaatgg         3177
//
ID   ISL2EU-4_BTa repbase;    DNA;    INV; 2279 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-4_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2279
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 662-662 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy, both ends are indeterminate. TSDs are supposed to
CC   be 0-bp long. Target are supposed to be AAATTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           89..2176
FT                 /product="ISL2EU-4_BTa_1p"
FT                 /translation="YIISNFYRAISSGIAKYQSVMAYQGAVQYLRCFTCNR
FT                 QLAGNAARVKLNNDEFKQQIASSRREELGFPPLEPDDTTRICFNCNVSICE
FT                 EMTLIEADPRCLRLNVLRGAQRTRCILCPLELGVTRLSIDCRVNIFVNKDI
FT                 YIPEGARSCPDHLDEYGFILEDFVPQLVYVNRPYVIQGDQLQSFMQGLRKA
FT                 ANAAAKISVDENSYSDDDFTVLTPITKQQFENLYTYCDPIPIQVKNANSVR
FT                 NVSRKDLLIFLCKMRLSLSDDFLRVIFRIPTRQAVSIIISKVRQSLMLRFV
FT                 PENIGFSSITREEYINRHVTSFANVLYNPTPDTPKALVYVDRTYSYMYKSS
FT                 NFKTLRQTYCVHKHSHLAKPVLIVAPDGYILCIQGPYFSDSKNNDAKLLLN
FT                 EFNIDEEMRDWFQEGDIFIVDRGYRDAVPMLNERHMNVIMPNLLDRGQRQF
FT                 STEEANESRLVTKTRWVVETRNGHIKSIFKFLDQKFQMAHISNLGDFYRIA
FT                 GGIINKYREPIQLGGASPELAAEMILKAQEPNVVQAFVEVHGLKRKNGEWV
FT                 HLSHDHVMDFPILDLDVIKDKITHGSFALRLAPSYIQDKLQREDEEEFQLD
FT                 ISLNHPGLIRVRIFSRFTNSARHQLFIKYQTDNEEVVNEADKIEGGFCSCK
FT                 SGARTLGCCAHVASLIWFLSYARHQNNIKYPSNSLLHKLKDAGGRVA"
XX
SQ   Sequence 2279 BP; 669 A; 458 C; 454 G; 698 T; 0 other;
     cttatttttt ccattcatac atatgtagat gtacgctttg cgcataccta ctgcatttgc        60
     cgattttcat caattatttt tcctgtgata tataattagt aatttttatc gagccatctc       120
     tagcggcatc gctaaatatc aatcagttat ggcttaccaa ggtgctgtgc agtacctacg       180
     ttgctttact tgcaatcgcc aattagccgg aaacgctgcg agagtgaaac tgaataatga       240
     cgagttcaaa cagcaaatag catcttctcg acgagaagag ttaggtttcc cgcccttgga       300
     acccgacgat acaactagaa tttgttttaa ttgcaacgtc tcaatttgtg aggagatgac       360
     tttgattgaa gcagatccgc gttgtcttcg gctaaatgtt ttacggggcg ctcaaagaac       420
     tcgttgcatt ttatgcccac ttgaacttgg agtaacgcgg ctctccattg actgtcgtgt       480
     caatattttt gtaaataaag atatttacat acctgaaggg gccagatcat gccctgatca       540
     cttggacgaa tacggtttta ttttagaaga ttttgtgccc caattagtgt acgtaaatcg       600
     gccttacgtg atccaaggag atcagttgca atcatttatg caaggtctcc gaaaagcagc       660
     aaatgctgct gccaaaataa gcgtcgatga aaattcttat tctgatgatg actttaccgt       720
     gctcactcca attacaaaac agcaatttga gaacttatat acttactgcg acccaatccc       780
     aattcaagtg aaaaatgcga attctgtccg gaacgtcagt cggaaggatt tgttaatttt       840
     tctttgcaaa atgagactaa gtctttctga tgattttttg cgagtgattt ttcgtattcc       900
     aacgcgtcaa gcagtaagta ttatcattag taaagttcgt caatccctga tgctcagatt       960
     cgtccctgaa aatattggat tttcctcgat taccagggaa gaatacataa atcgccacgt      1020
     cacctccttc gctaatgttt tgtacaaccc cacccctgac acccctaaag cccttgtata      1080
     tgtcgacagg acatactcat acatgtacaa aagcagtaat ttcaagacac tacgacaaac      1140
     atactgcgtg cataaacata gtcaccttgc taaaccagta ttaattgtcg ctccggatgg      1200
     ttatattctt tgtatccagg gtccctactt ctctgacagc aagaacaacg atgccaaatt      1260
     attactcaat gaatttaata ttgatgaaga gatgagagat tggtttcagg aaggtgatat      1320
     ttttattgta gatcgtggtt acagagatgc tgtccctatg cttaatgaga gacatatgaa      1380
     tgttattatg ccaaaccttt tggacagagg ccagagacag ttctcaacag aggaggcgaa      1440
     tgaatctcgg ctagtcacta agactagatg ggttgtcgaa actcgaaatg gccatataaa      1500
     gtcgattttt aaattccttg atcaaaagtt tcaaatggcg cacatttcta atctcggaga      1560
     tttctatcgc attgcagggg gtattattaa taaatatcgt gagcccattc aattgggagg      1620
     tgcaagtcct gaacttgctg ctgaaatgat tttgaaggcg caagagccaa atgttgtaca      1680
     ggcattcgta gaggtccatg gcctgaaacg taaaaacgga gaatgggttc atttgagtca      1740
     tgatcatgtg atggattttc caattttaga tttagatgta attaaagata aaataaccca      1800
     cggctccttt gctctacggc tagcgccctc ctacattcaa gacaaactgc agcgagagga      1860
     tgaagaggaa tttcagctcg atatttcact taatcacccc ggattgatac gtgtgcgcat      1920
     cttctctcgt tttacaaatt ccgctcggca tcagcttttc atcaaatacc agacagataa      1980
     tgaggaagtt gtgaacgagg ctgataaaat tgaaggaggt ttttgttcct gtaagtcagg      2040
     agcgaggact ttgggatgct gcgcccatgt tgctagttta atttggttcc tatcatacgc      2100
     tcgacaccaa aataacataa aatacccctc taactcacta ttacacaaac ttaaagacgc      2160
     tggtggccga gtggcataga gaaataccta ccaagaaatt gttttatttt tgattcctct      2220
     atttacattt cattcaggtt cgttattatt taattgtaag taattgtttt ataatagac       2279
//
ID   ISL2EU-4_CFl repbase;    DNA;    INV; 3855 BP.
XX
AC   AEAB01019272;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-4_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3855
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01019272; Positions    5199    9053.
XX
CC   Single copy. ~230-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1272..3281
FT                 /product="ISL2EU-4_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MPATICLGCQCQKRSKNDKFYSTDSVALITINNLRQK
FT                 YNAKKRKLNEINDIPVASKICKSCYDLIHNNPIASLNLDNTPDLTIYRKGL
FT                 NSHTQCTFSCKNVKNLISVPSITRQSLLMNYKFLILPDARMCSEHLTIDNY
FT                 WPFVKQITCEVTTEDQKIISDLMFDYYHNSRMNEKHVFDIDNISSIDNNAF
FT                 KAWFAFDKNQFQKICDFVKECQPKHVAVFLCKLRTSLSNQQLAFLFGCSER
FT                 TISNYMDNARKDLLENLVPRFINNNDRTVLLNHNTPMAKILFDIPDKNGSC
FT                 VFDATYRLVQKSKNYAGQKQLWSEQKKMPLMKPMVGCAPDGYILFVLGPFD
FT                 ATHNDAIIFKECFNRYKEIMAIFQRNDVLFVDNGFRDVLEELKDRELLAYI
FT                 PGTGKRDTLEANKARLVTKVRWIIEQVFGRLKKKFKLFALPAHNATLLHDY
FT                 ESLLISFALLNLFHEPILSDKTHKDIVHVMKSRLNVPNRLKGVVEQYNLLQ
FT                 IKVPYIELNYTAVDNQENNRLLQFPQLTINDLYYISFGPYQINNAISYYAE
FT                 HQKEGIFLVQKFEPNPRHYRTSDLDYVNHGIVIIDPLLVKAYMKSRYRSGK
FT                 NHHIFVLVDKSKSGKDAIVEYYCTCESGSRTVGCCSHIMTIIWYLGYGQYN
FT                 GIDIPNPDICNVSITIPKKQN"
XX
SQ   Sequence 3855 BP; 1210 A; 689 C; 637 G; 1319 T; 0 other;
     aaagagtgac cgcaaaaaca ggccaaaaat cgcctgtttt ttcaccctcg aatttggact        60
     taaatttgat gttaaatgat agtttatcat gagacattac tcctctgaaa attttaaatt       120
     gagcctattt tttatcgctg agatataagg ggtcaaagtt gtcattacgc accaactcat       180
     tataaccgat tttaatcttt ccacgcaaat gactcgaaag ttataagaaa tattataccc       240
     cgactgtatc ggggccggcc gagtcctttt ccgtgaggtg atctcctctg gtagaggagg       300
     ttgttctccg gtcgtcgccg tggttatgtt cttcgcttct tctaggtcta tccgctgctc       360
     gtcttgctgg ttagtcgtct tgatatctct ttcttgttgc ttagattgcg agagattgag       420
     atgaggtgtt ttggctccgc aggggtcctc cttatatttc ccttgaggct gttcttcact       480
     tccgggaaaa gcactattgg cgcgcgaccc tagcggaggt gcccggtact aggcgtccgc       540
     gcttgcgaga aagccgcact gagtttttgc aaactattaa tgtgtggcgt gtaccgccac       600
     aatgtctttt tcaagttctt agtttgcctt tttttaagat taccttcagt ttatcttttt       660
     tccggtcaac tctctttctc tctctctctc tctctctctc tttttttttc tctttctctt       720
     tatatatata aaactatagc cttttattga gaattattgt cagataactt tttcagaatt       780
     attccactaa ttatttttta gtaaatcata attaagttcc ctttttcaag tctagaattt       840
     ttataagttg caactattct gaaacatgct ttccgagccg tgctttctaa aatattttga       900
     ctagcttttg cagaattatt tcattcattt tttagcgcat tattcaaaac aatccttttc       960
     agaacttttt tctaattagc tctttttaaa gctactgtat aattatcctt tcttcaggtc      1020
     aacattcaga tatttccttg aaaaattttt attttaaaat tcttttatag ccgtgtttta      1080
     ttaaaaaata ttcagcttat ttcatttatc actagtcttt cctaaacatt attgtagcat      1140
     tattactgta ggattttttc agtattaact tttgtcagtt atttttttcg aaaatcattt      1200
     tttaagacta ttttctagcg aactgttttt aagttttcta tttttatttc gatactacag      1260
     cattgaaaaa aatgcctgcc acaatttgcc ttggctgtca atgtcagaaa agatcaaaaa      1320
     atgataagtt ttattctact gacagtgtag ctttgattac tattaataac ttgagacaaa      1380
     aatataatgc aaaaaagcga aaattaaatg aaatcaacga tatcccagta gctagcaaaa      1440
     tctgtaaatc atgctatgat ttaatacaca ataatcctat cgcttcattg aatttagata      1500
     atactcctga tttgacaatc tacagaaaag gtttaaactc tcatacacag tgtacattta      1560
     gttgcaaaaa tgtaaaaaac ttaatttcag ttccaagtat aacgcgccaa tcactactta      1620
     tgaattataa gtttctaatt cttcctgatg ctcgcatgtg ctcagaacat ttaactattg      1680
     ataactattg gccttttgtg aaacaaatca cgtgcgaagt gacaactgaa gatcaaaaaa      1740
     taattagtga tcttatgttt gattattatc ataattctcg aatgaatgaa aagcatgttt      1800
     ttgatataga caacatcagt tctattgaca acaatgcttt caaagcatgg ttcgcttttg      1860
     ataaaaatca atttcaaaag atttgcgatt ttgttaaaga atgtcaacct aaacatgtag      1920
     ctgttttcct ttgtaaattg cgtacttctc tttcaaatca acaactggct tttctatttg      1980
     ggtgcagtga acgaacaatt agtaattaca tggataatgc aagaaaagat ttgcttgaga      2040
     atttagtgcc acgattcatc aataataatg atcgaacagt tctactcaat cataatactc      2100
     ctatggcgaa gatactgttt gatattcctg acaaaaatgg ctcttgcgtt tttgatgcta      2160
     cgtaccgatt ggtgcaaaaa tcaaagaatt atgctggtca aaaacaacta tggagcgaac      2220
     aaaaaaaaat gccgcttatg aaaccaatgg taggatgtgc tcctgatgga tatatacttt      2280
     ttgttttagg gccctttgac gcaactcaca atgatgcaat catatttaaa gaatgtttta      2340
     acagatataa agagataatg gcaatttttc aacgaaatga tgttcttttt gtcgacaatg      2400
     gatttcgaga tgttcttgaa gaactcaagg acagagagct gcttgcttac attcctggca      2460
     ctggaaaacg ggataccttg gaagcaaata aggcgagatt agtcacaaag gtccgatgga      2520
     ttatcgaaca agtatttggt cgacttaaaa aaaaattcaa attgttcgct ttaccagccc      2580
     ataacgctac tttattacat gattatgaat ctctcttaat ttcttttgca cttcttaact      2640
     tatttcatga gccaattcta agcgataaaa cacataaaga tattgtacat gtaatgaaat      2700
     caagattgaa tgttccaaat cgtttaaaag gagttgttga gcaatacaat ctcttgcaaa      2760
     taaaagttcc ttacattgag cttaattata cagcagttga taatcaagaa aataatcgtc      2820
     tcctccagtt tccacaactc acaataaatg atctatatta tatcagtttt ggaccttatc      2880
     aaataaacaa tgctatttct tattacgcag aacatcaaaa agaaggaatc tttcttgtac      2940
     agaagtttga accaaaccca agacattatc ggacttctga tttggactat gtcaatcacg      3000
     gtattgtcat catagatccg ctccttgtga aagcatatat gaaatctcga tatcgcagtg      3060
     gaaaaaatca ccatattttt gtattggtag acaagtctaa atctggaaaa gacgcgattg      3120
     tagagtatta ttgtacttgt gagagtggtt ctcgaactgt tgggtgttgt agccatataa      3180
     tgactattat ttggtacctt gggtatgggc agtataatgg aatagatata cccaatccag      3240
     atatatgtaa tgtatcaata actattccca aaaagcaaaa ctaataaaat catatacatg      3300
     tatatatcgt tcaccccgca tcgtgagagg caaggggact cacgctaatc aatgaccccg      3360
     aatcgtgaga ggcaagggga ctcacgctaa tcaagcaccc caatgagacc ataacccttc      3420
     tacaggccat tgttccttga taacgctaag aataggaaaa aatgcgtaca ctcctttgaa      3480
     ccataggaat atgtttttaa gaacaaaagt agggatttct atttaaaaaa tcaacttggc      3540
     ctccaaatga ccttgatatt tgtccgaagg tcaaggtaag gtcaccttta gatagtctta      3600
     tacaagatct acaacttttg tttaaaatat ttttcaatat ttcttataac tttcgagtca      3660
     tttgcgtgga aagattaaaa tcggttataa tgagttggtg cgtaatgaca actttgacct      3720
     cttatatctc agcgataaaa aataggctca atttaaaatt ttcagaggag taatgtctga      3780
     taaactatca tttaacatca aatttaagtc caaattcgag ggtgaaaaaa caggcgattt      3840
     ttgcggtcac tcttt                                                       3855
//
ID   ISL2EU-5_BTa repbase;    DNA;    INV; 3382 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-5_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3382
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 663-663 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. 3'-end is indeterminate. TSDs are supppsed to be
CC   0-bp long. Target are AAATTT, TE inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1252..3219
FT                 /product="ISL2EU-5_BTa_1p"
FT                 /translation="MSGNVQTCVECKVSLEKKSRKDKVCRSGQWFCLKCSA
FT                 EFLRKSSEVAEKPPEKVTIGFKSPSVKTHRKCIFDCSDSLDSGNLIFLNKQ
FT                 LRSAIFFEYKFIIREGSRCCAHHFTNGVLDPLFLSGFIDKCSESSSFSAGE
FT                 IEELLSITCKYHNSSSGKSSDSATGFFLKLSDHDIQVWTGLNKLQFETLLE
FT                 YIPEKDDCVLGAYLMYLYAGITQEQIATILNISRSTVSRKITECRQHLNDS
FT                 FVPVYLGNFLREQIRAEQSNISRVLNCVKEGDDTLITIWDGTYLFLHKSLN
FT                 FRFQRQTFGGQKKRNYVKPMIVTTTNGLILEVLGPDELYAGNVSDADILKN
FT                 IIKTDFFKKLFKPGDIFILDRGFERVKDDLEALGFKVTIPCLKRDNSQLTT
FT                 LEANQSRVCTKQRWVVEVVNSSLKRFKYLRSVIPSQSYPYLYTDVRIAAAI
FT                 HNNFFQRLYSDEDDSSVATCMLANLEKENILQKVVECESLVRKYKNFEKLS
FT                 EAHLQDFPIWESSDFKPFCGTYQLSLARSYIGDHLYSGKYEFQVCKDSYMP
FT                 SFSNYGFTVKKSQFLKCKLLSRHKSNKVYSIFILIDLKKRSSESIIGNYCT
FT                 CKNGARTIGTCAHIIAIIWYLGYGRYQQNFKGPSDFLNRCFPLGKPSSVET
FT                 DEEEDDE"
XX
SQ   Sequence 3382 BP; 1024 A; 612 C; 677 G; 1069 T; 0 other;
     gaggtctgtg caaaaacggc aaaatccgcc caccctcaga tttcaaccaa acttcggatt        60
     ttgataggcc tatatgccaa tagtaatccc tgaaaatttc agcccccaaa aataattaca       120
     agaggggggg cggggggtca aagttggaaa atcgtgcaaa attcaaactg ctatatctcg       180
     gcaacggtta cagctttttg aatgcggttt ggaccaaaaa acgcagaatt gtatgtagtt       240
     tctatttcat gtatcgtttg ttacaaaatt tcaacgcaac gttgccattt ttgcaatttt       300
     ttcaattctt atcaaatttt gaccccttaa atttggcaac attgtaaata gcaaaaaacg       360
     tcatctcgcg attttgacca aaataagata tgttgttctc aatgcaattc cctacaaaac       420
     agcacaagtc gcatactggg gaaacgattg gttcgcaagt tacagcttct caaagttgcg       480
     cacctcgagg ttgttgcgcg ctgcgcatgg tattagcgcg ccttgcctcg aactacagcg       540
     acttattcac ggtttaaaaa cgcttagacg ctttcatatg ttctattcta ctgtattttt       600
     cattagaaaa cgagaaaagg tccacgggta ccaaaagaag gggggaggga gccgtaaatg       660
     atagcctttt tttacgcttt tcgcaatatt tttaactcaa acgagcggaa ttagggctcc       720
     ttgcaccccc cccccctttt taactcacgc gttctctttt ctcagttttc taaggcaaaa       780
     atgatgtata attaaatgca acatctgaaa atagaaaggt gtacccgctt ggcgaccgaa       840
     ccctgcacaa acagtagaat ttgcatgaat ggacacactt gaaattctta ttttcttcag       900
     gagctatttc tgaagtattt ttaaaatttt taaactatat cgattcatcg attttcgaca       960
     atatcgcagt attgtatttt tctgtgaaca ctgaacgatt tggtaggatt ggctacctta      1020
     cactgcatag ggcgcgcgat cattgatgga ccgcggagtt aggagattgc gaatccttat      1080
     ctgatctatg ggtattattt taatcaatcg tgaagataga ttagcacaac accgatgata      1140
     acatgcacat tgcaaattgt aataacacct gtttaaactg atcaattagt tgacctctat      1200
     ctttcgatcg agccgggtta ttttcttaaa tcctgtcatt tttcttttac gatgagtggt      1260
     aatgtacaaa catgcgttga gtgtaaagtc tcgttagaga aaaaaagtcg taaagacaaa      1320
     gtttgccgaa gtggacagtg gttttgttta aaatgtagtg cggaatttct caggaaatcg      1380
     tcggaagtcg cggaaaaacc ccctgaaaaa gtgacaattg gctttaagtc tccctccgtt      1440
     aaaactcacc gtaaatgtat ttttgattgc tcagattcat tagattcagg taatttaatt      1500
     tttttgaaca aacagctgag aagtgcaatt ttttttgagt ataagttcat tatacgagag      1560
     ggcagtcggt gttgtgctca tcatttcaca aacggtgttt tggatccttt atttctatcc      1620
     ggtttcattg ataaatgctc tgagtcttct tcttttagtg caggtgaaat tgaggagtta      1680
     ttgtcaataa cgtgcaaata ccacaattca tcctccggaa agtcaagtga tagtgcgaca      1740
     gggttttttt taaaactttc cgaccatgac attcaggtat ggaccggcct aaataaattg      1800
     cagttcgaga ctctactcga gtatatacct gaaaaagatg actgtgtttt gggtgcttat      1860
     ttgatgtact tgtacgctgg aattactcaa gagcaaatag caacaatttt aaacatatca      1920
     cgaagcacag ttagccgtaa aattactgaa tgcaggcaac atttaaacga tagttttgta      1980
     ccggtgtact tagggaattt tttgcgcgaa caaattcgag ccgaacaatc taatatatct      2040
     cgtgttttaa attgtgtgaa ggaaggagat gacactttaa tcactatttg ggacggtact      2100
     tatttgtttt tacataaaag tttaaacttt aggtttcagc gtcagacttt cgggggccaa      2160
     aaaaagagaa attatgtaaa acccatgata gtgacaacaa caaatgggtt gattcttgaa      2220
     gtactaggtc ctgatgaatt gtatgcagga aatgtctccg atgcagatat tttgaaaaac      2280
     attataaaga ctgacttttt taagaaactc ttcaagccag gtgatatctt tattttagat      2340
     cgtggttttg agcgagtaaa agatgacctt gaagcactag gattcaaagt aacgatccct      2400
     tgcctaaaaa gggataattc tcagctcact actttagaag ctaaccagag tcgagtttgt      2460
     acaaagcagc ggtgggttgt agaggttgta aatagtagtt taaagcggtt taagtacttg      2520
     cgttcggtga ttccctctca atcatatcca tatctataca cggatgttcg aatcgcagca      2580
     gctatccaca ataatttttt ccaaaggctt tacagcgacg aagatgattc ttctgtggct      2640
     acttgcatgt tagcgaattt ggaaaaagaa aatattctcc aaaaggtcgt cgaatgtgaa      2700
     tcattggtga ggaagtacaa gaacttcgag aaattatcag aggcccatct tcaagatttt      2760
     ccgatctggg aaagcagtga ctttaaacca ttctgtggaa cttatcagct ttcattagca      2820
     cgctcttaca tcggggatca tttatactcg ggaaaatatg aatttcaagt gtgcaaagac      2880
     tcttacatgc ctagtttttc taattacgga tttacagtga aaaaatcaca atttttgaag      2940
     tgtaaactgc tgtctcgcca taaatcgaat aaagtttatt ctatatttat tttaattgat      3000
     ttaaaaaaac gttcgtcaga atcgattatc ggtaactact gtacgtgcaa aaacggtgct      3060
     cgcactattg gtacatgcgc tcatatcatc gctatcattt ggtatcttgg atacggcaga      3120
     tatcaacaga attttaaagg cccatcggat tttctgaata gatgtttccc tctaggaaaa      3180
     ccatcatctg tagaaactga tgaggaagaa gatgacgagt aagatgttta ggtaagccaa      3240
     actataaaca tagttatgtt atttcgtttc gtcatggaac aattaccatc aatttttggt      3300
     tgtgtatttg ttatttttgg tgctgggttc ggtcgccaag cgggtacacc tttctatttt      3360
     cagatgttgc atttaattat ac                                               3382
//
ID   ISL2EU-5_CFl repbase;    DNA;    INV; 5532 BP.
XX
AC   AEAB01019979;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-5_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-5532
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01019979; Positions       1    5532.
XX
CC   Single copy. ~230-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1191..1210,1914..2774,3135..4017)
FT                 /product="ISL2EU-5_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MEEKSTSKVKPKGDFNKKCIRCDQYLRKKGGRVKYIT
FT                 TDLEANSLSNLLNKKIKVGDTVCDICRPRLHFTSVKNKSENSDDVMNLSEQ
FT                 LSQASLESSLPSHSSTASDPTCVYKPEKQASVIETVQMPFKRVITTEKYCC
FT                 LCSSASGRLQVPFEARMQAFIKKRIFISNRNRCCSKHLIKKRFYDEELDNL
FT                 RIVSNYSRVEVTELSKYLEQLSVRCDSTIHDKIGDFSLSEERIKALTGFTW
FT                 ENIIQLRDMMTSIRNTANRSVTQALVVFLFKFRTGNSNKLIASILQLEHKS
FT                 QVILKKGDIFILDRGFRDVKKFLENEGYQVLMPALKGNRPQLTTQESNESR
FT                 LITKLRWVIEAVHGIIGQKFKLLHHQLDNKLLHNAASYCKIACFLINTFGK
FT                 RLNSDVGIYEEVMEQMLLKRNVNNSLAIEAETKRWSRRKLPFQKLSSTELM
FT                 DFPEMTENDLKVLFTGSYQLSQAVSYLAEIMDDNGNINGNFLKANKSIVKF
FT                 EVRSRHINRKTYKCYIEYAPNTIGKAGILRYTCECANGLRTIGCCSHVAAI
FT                 TYYLTHARYLSRIVRPVEALIKLFNVEKVNPVINDNSDED*"
XX
SQ   Sequence 5532 BP; 1980 A; 774 C; 850 G; 1928 T; 0 other;
     tgagatatca atttttttca gtcagaaaat tcaattttct ttatttaata aatgtgttaa        60
     aaaatactga aaataaataa agctaatttg aaactaaata cgaaagccaa attaaaaata       120
     gtaagcttaa gattatgaaa aaatttgaag agtaaatgtt acaccaaata tactatacta       180
     taattaaatt gcatattgtt aatgtaaaat ttttatttca atctagctca catgtttgtt       240
     agagtgcccg cagaaatatt tattagtgag atatagaggt cacatcgccc cagagttcca       300
     attgctattt gttcatatgc tatttgttct atttgaattt tagcgcgctt gacgcgaatg       360
     acgcgccaca gtagtctcgt gtcgatcagt caaacgacaa ttttatcata atcactaaca       420
     cgaattgata aagtttgagc tactcgaact taaacgtcac gttattatcg ttatgataca       480
     cgttagcgac atccaacata ttgaataatt tcaagattca ataaattgat aaattggttt       540
     ataagaaagt atatttcttg aaagtcttgt aagtttattt gaatttattt gaatacagaa       600
     agttttggtt aaagtgaaaa atagcgccaa acagattgcg taaagttcag cgtagattgc       660
     cctaatcaca atcaagaaga taaacaatta ttatacgcta aaatcaatgt ttatgcaact       720
     taaaatcagc atacctcact taactgttaa gtagagagtt aatttgtttc ttatttacat       780
     gaaaccaata tttagttttc caagattata tgcatcatgg acatgtagcc aaaacagatt       840
     ctagcgctat tttcacattt atctatgttt taagcaatat tatttaagtt tcttaaaccg       900
     tcttttttta aattattaga cgcgcactaa gcgcgcgcta tttagctttt tgatttttac       960
     tttattaaac aattatacag ttatttgtta tattagttgt attaattaaa caattatatg      1020
     attataatta tattaattaa acaattaata aataacaaat cgcggacgca gacaagaagc      1080
     aacgaaatag ggcttcatta cacctttaaa ataggattga ggattattat tcatcaccga      1140
     cattgattat tattcagatt gtagtcctct catttcaaca tttgttgata atggaagaaa      1200
     aatctacgag gtaatatatt ttattctttt actatttttt tttgttaaat atttttaata      1260
     cttttttcga caaatactgt taactaacat tatattaaag ctaagcaata agaaaaagtt      1320
     ggttcatgac taaataatat atctttattt aattaaaaaa gtgatttgtc tgtacaataa      1380
     agtgttagat tttagctatt ttagattttc ttgcaatagt ttttgttact aatattttgc      1440
     tactatttta cctttgtcac tattatttta aagtgttaat tttattttat actcatgtta      1500
     ttcagcgttt taatattttt ttcgaaatca agtggatgag agaaacaata atatatttct      1560
     tctttatgaa gagaaagtaa tgaacatgaa atggttaata gtatcatttt taaatggttc      1620
     aatttattat ctctttgagc tttagtttta taaattcaaa tatatttttt tattgtaaaa      1680
     aaagtgttat aaaatatgta aacatagttt taaagtaatt ttaaacataa aactttttct      1740
     taaaaactaa cgaatttgtt gttatgatga aattaattct attatattac taaaaacaaa      1800
     gctatcgctt aataatattt atcttagtaa tattcttagt aatatttatt taattattta      1860
     taatttgttt atttacattt ttttcactta tttttacatt tttttactta cagcaaagtt      1920
     aagccgaaag gagactttaa caaaaagtgt ataagatgtg atcaatatct ccgaaaaaaa      1980
     ggtggaagag taaaatatat cactacagat ttagaggcaa actctttatc taacttgtta      2040
     aataagaaaa taaaagtagg tgatacggtg tgcgatattt gccgtccacg cttacatttt      2100
     acgtcagtta aaaataaatc agaaaacagt gatgatgtaa tgaacttgtc ggaacaatta      2160
     tcacaagcgt ctttggaatc atcactgcct tctcattcat caacggcgtc agatccaaca      2220
     tgtgtttata aaccagaaaa gcaagcatcg gtaatcgaga ctgtccaaat gccgtttaaa      2280
     agagtcatta caactgagaa atattgttgc ttatgttcat cagcatcagg acgtttacaa      2340
     gtgccatttg aagctcgtat gcaagctttc ataaaaaagc gtatatttat ttcaaatcgc      2400
     aatcgatgct gttcgaaaca tttgattaag aaacggtttt atgatgaaga gctcgataac      2460
     ttgcgcattg tttcaaatta tagcagagta gaagtaacag aattgagcaa atatctagaa      2520
     caattatctg tcaggtgtga ttctactatt catgataaaa ttggagattt ttcactatct      2580
     gaagaacgaa ttaaagcatt gacaggcttc acttgggaaa atatcataca actacgtgat      2640
     atgatgactt caattaggaa tactgcaaac cgaagtgtca ctcaggctct cgtagttttt      2700
     ttatttaaat tcagaactgg taattcaaac aaattgattg cttctattct ccagcttgaa      2760
     cacaagtctc aagtgtcaga attctgtgaa tctgtatcaa atcttttgaa aaagatatat      2820
     tgccatcaca ttttggaatt caagcctgtt ctcgagaaaa tcttaacaat caatcatctg      2880
     tttatcgtaa cttgtatggt gtagagaatc agttagctat aatatgcgat ggatcgtata      2940
     ttcgacatca aaagagctca aacaacgaat atcaaaggaa gtcatattcg gatcagaaaa      3000
     aggttccttt atgcaaaccg ttcacgattt gcacaacgaa tggatttgtg attgatgtac      3060
     taggaccatt ttatgccacg cagaatgacg ctcagatatt acaaattagt ttatccgatt      3120
     tgaatggttt gcagcatttt gaaaaaaggc gacattttta tactcgaccg aggtttcagg      3180
     gacgtgaaaa agtttttgga aaacgaaggc tatcaagttc ttatgcctgc gctaaaagga      3240
     aatcgtcctc aattgacaac acaagaatcg aacgaatctc gtttaattac aaaattgcgt      3300
     tgggtgattg aggctgtgca cgggataata gggcaaaaat tcaagcttct tcatcatcag      3360
     ttagataaca aattactaca taatgctgct tcttattgca aaatagcctg ctttctcatt      3420
     aatacttttg gtaagcgttt aaattcagat gtaggcattt atgaagaagt tatggagcaa      3480
     atgcttctga aaagaaacgt gaacaattcg ttagcaatag aagcagaaac aaaaagatgg      3540
     agtcgacgaa aattgccttt tcagaaattg tcctcaactg agttaatgga ttttccagaa      3600
     atgacagaga atgacctaaa ggttttattt acgggctctt atcaattatc acaagcagtt      3660
     tcttacttgg cagagattat ggacgataac ggaaacataa atggtaattt tttaaaagca      3720
     aacaaaagca tagttaagtt tgaagtcaga tcacgacaca taaaccggaa aacctataag      3780
     tgttatatag aatacgctcc aaatacaatt ggaaaagcag gtatcttacg ttacacgtgc      3840
     gaatgtgcta atggactaag aacgattggc tgttgttcac atgttgcagc aattacatat      3900
     tacttgacgc atgcgagata tttatctcgt attgtaagac cagtggaagc gttaataaaa      3960
     ctttttaatg ttgaaaaagt taaccctgta ataaacgaca acagtgatga agactgatac      4020
     ctttctattt atataataac gaagaaataa atacactatg tgccatggat ttttgctttt      4080
     atttctttat ttgcataagt atacttttag gaagttaatt aatagaaact tatcaatatg      4140
     aagcgaattt aaggtttttc aactacaaag attaaacaac tgtgtatatg aaaaacctta      4200
     actctctcgc tgttatgtta gtgcataagt agatgagttt atcatatgca ttatgtgctt      4260
     gataaagtta aaaattgaag aaaatatata tttgaagaaa atgaaaaaac tgctaaaatc      4320
     agttaaatta atttttctga ctgaaaaaaa ttgatatctc atagtttaaa ttacgtgaac      4380
     tctataattt tatactacta tttgcagatg tgtaatcgga ggtaatggta tttaaaaaca      4440
     acgtaatata tgtcaatcgg aagtcgtccg cgatttgtta tttattaatt gtttaattaa      4500
     tataattata atcatataat tgtttaatta atacaactaa tataacaaat aactgtataa      4560
     ttgtttaata aagtaaaaat caaaaagcta aatagcgcgc gcttagtgcg cgtctaataa      4620
     tttaaaaaaa gacggtttaa gaaacttaaa taatattgct taaaacatag ataaatgtga      4680
     aaatagcgct agaatctgtt ttggctacat gtccatgatg catataatct tggaaaacta      4740
     aatattggtt tcatgtaaat aagaaacaaa ttaactctct acttaacagt taagtgaggt      4800
     atgctgattt taagttgcat aaacattgat tttagcgtat aataattgtt tatcttcttg      4860
     attgtgatta gggcaatcta cgctgaactt tacgcaatct gtttggcgct atttttcact      4920
     ttaaccaaaa ctttctgtat tcaaataaat tcaaataaac ttacaagact ttcaagaaat      4980
     atactttctt ataaaccaat ttatcaattt attgaatctt gaaattattc aatatgttgg      5040
     atgtcgctaa cgtgtatcat aacgataata acgtgacgtt taagttcgag tagctcaaac      5100
     tttatcaatt cgtgttagtg attatgataa aattgtcgtt tgactgatcg acacgagact      5160
     actgtggcgc gtcattcgcg tcaagcgcgc taaaattcaa atagaacaaa tagcatatga      5220
     acaaatagca attggaactc tggggcgatg tgacctctat atctcactaa taaatatttc      5280
     tgcgggcact ctaacaaaca tgtgagctag attgaaataa aaattttaca ttaacaatat      5340
     gcaatttaat tatagtatag tatatttggt gtaacattta ctcttcaaat tttttcataa      5400
     tcttaagctt actattttta atttggcttt cgtatttagt ttcaaattag ctttatttat      5460
     tttcagtatt ttttaacaca tttattaaat aaagaaaatt gaattttctg actgaaaaaa      5520
     attgatatct ca                                                          5532
//
ID   ISL2EU-6N1_BTa repbase;    DNA;    INV; 1139 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous; Spy;
KW   ISL2EU-6N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1139
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 658-658 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are  0-bp long, elements
CC   insert specifically into the AAATTT target sites, between AAA and
CC   TTT.
XX
SQ   Sequence 1139 BP; 298 A; 277 C; 262 G; 301 T; 1 other;
     ggactacgtg caaaacgggc catttggggc tcggggcgga tacctttgag acttgcccta        60
     ttcattcacc taacaatgcc ccatcttttc ccaaagtttc aagcccccca aaaattttgg       120
     ggagacgcgg cggggggtca aagttaaaaa ccggcaaaat tttcgcgaat ttattactcg       180
     aaaaccaaga agttttggaa aacgcggttt aaacgagcgt attcagcgtg acgagagctt       240
     tcagaaaatg tataacatca tagggttttg tcaacttcag ctcgagttat cgcctccgaa       300
     gcgccggaac gctcaaaaaa gaccccttat tttttcacgt ttgggccgat ttaaaaaaaa       360
     gccatttttt tattttgatg aaaaactgat atgttgttcc tgactctctg tagcccctct       420
     agctctttac cgcatgctgg ggaaatgttt tggtcgcgag ttataagagc ggaaaggagc       480
     gaaggtcggg aaaatcggct attttaaact gcgcgcggcg gcgttgatcg gaggggaaac       540
     gtcccctccc acccagttcg gcggatcasa ctcctccgcc gacctcgcat tgttgccacg       600
     tgtcccctcc gatcaacgcc gccgcgcgca gtttaaaata gccgattttc ccgaccttcg       660
     ctcctttccg ctcttataac tcgcgaccaa aacatttccc cagcatgcgg taaagagcta       720
     gaggggctac agagagtcag gaacaacata tcagtttttc atcaaaataa aaaaatggct       780
     tttttttaaa tcggcccaaa cgtgaaaaaa taaggggtct tttttgagcg ttccggcgct       840
     tcggaggcga taactcgagc tgaagttgac aaaaccctat gatgttatac attttctgaa       900
     agctctcgtc acgctgaata cgctcgttta aaccgcgttt tccaaaactt cttggttttc       960
     gagtaataaa ttcgcgaaaa ttttgccggt ttttaacttt gaccccccgc cgcgtctccc      1020
     caaaattttt ggggggcttg aaactttggg aaaagatggg gcattgttag gtgaatgaat      1080
     agggcaagtc tcaaaggtat ccgccccgag ccccaaatgg cccgttttgc acgtagtcc       1139
//
ID   ISL2EU-6_BTa repbase;    DNA;    INV; 4265 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-6_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4265
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 664-664 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. 3'-end is indeterminate. TSDs are supposed to be
CC   0-bp long. Target are AAATTT, TE inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1490..3562
FT                 /product="ISL2EU-6_BTa_1p"
FT                 /translation="MSDQNCYGCGRSLKKKSRREKVVRGNKWLCLKCDLPS
FT                 SRKISCRRLSLPVEILPPIFPENPAQAEILPEEENPGEADFTETRVKLDLK
FT                 STIKSRSRCIFLCPDSHRKNLTIISKALREHVLIKYKLFIHEKSRCCSAHL
FT                 VDGAFDEDFMTDFSERCDSENSLFSGAEIDQILAVTLNRSAKNDNETNFYD
FT                 NLSPEKFELWFGVDKKNFDDLCAYLPGVKKNGVKLCAYLLHLYVNLSFDRI
FT                 GALLNVHRSTVSRYLSDCRTLLTQKFVSVHLDNISRETIFSQTTKISKILN
FT                 QIPQNSDRVITVWDGTYLFLPKSSNFRFQRKTFGGQKKRNYCKPMIVTTTN
FT                 GLIVDILGPQTLWAGSVSDADILKSVMTLPFFKDFYKPGDIFILDRGFERV
FT                 KPDLEALDFSVSIPCLNRSDHQLSTLEANESRICTKQRWIVEATNRSLKRF
FT                 GIFNSTVSAHEYVHLYADLKVAGAIHNVFFTRMYSDDDDEEVARQMLEKLN
FT                 EPNLMQQLVMDESLTRRSKTFETLTSDHYSDFPVRTVEQFRKFSGKYQLCL
FT                 ARSYIADHFQAGKYEFCVCKDQLQPDFSKYGLRVANPLFIKCKLLSRHKSE
FT                 KYYCIFILIDKDRSADTSITAYYCTCKNGARTVGACAHTIAILWFLGCGRH
FT                 IEDLKGPSDFLNACFPLIPFSEDDSDDEHDNDEYRRCSSSVR"
XX
SQ   Sequence 4265 BP; 1146 A; 843 C; 898 G; 1378 T; 0 other;
     ggactacgtg caaaacgggc catttggggc tcggggcgga tacctttgag acttgcccta        60
     tgcattcacc taacaatgcc ccatcttttc ccaaagtttc aagcccccca aaaattttgg       120
     ggggacgcgg cggggggtca aagttgaaaa ccggcaaaat tttcgcgaat ttattactcg       180
     aaaaccaaga ggttttggaa aacgcggttt aaacgagcgt gttcagcgtg acgagagcat       240
     tcagaaaatg tataacatca tagggttttg tcaacttcag ctcgagttat cgcctccgaa       300
     gcgccggaac gctcaaaaaa gacccctttt ttttcacgtt cgggccgatt taaaaaaaag       360
     ccattttttg attttgctga aaaactgata tgttgttcct gaccctctgt agcacctttt       420
     gctctttacc gcatgctggg gaaatgattt ggtcgcgagt tataagagcg gaaaggagcg       480
     aaggtcggga aaatcggctg ttttaaactg cgcgcgcgga gttgatcgga aggagaacgt       540
     cccctcccgc tcagttctgg gaatcacact cctcggccaa actagcattg ttgccatgtg       600
     tcctccggtt ctaccacgcg tgccggcgtg gcgtgcatca ctagacctca cacacgtttt       660
     cgcattgctt ctacgtggat tttctccgtg tttttattct cggtcattaa tttattgttt       720
     aacaatttac ccatactccc aatgaataaa cgagactagg cataagtaga ttaaattaaa       780
     ttattgaggg ggggggggat tagaaaagga aaggaagagg tgacaaagtt aaggaggatg       840
     ctgatgaaaa attccttctt cacttcctag cttttgtaca gcgtgaggag gagagcattt       900
     gggggaaaat tcatttttca aaagtgggtg tctacattct gtatttttct tcttcttttt       960
     tttccccgag ttttcttggc acattgaaag gaaatatagg tattcatcaa agatagacct      1020
     agaaaaattg cttgaatagg gtagaatggg gggagggggg tcattggcgg acgcacgaac      1080
     aatattgagg gaggtttttt acagaagaac taaaaaaaaa agttttctcg agcgcacctt      1140
     tgaaactgga aatagtccct gaacatgtag tttcatgttt catgtgtgat tatttcagtt      1200
     gccctttatt gcatatgtaa tgatgcattg ttaattaatt tggcaactat aacaatgaac      1260
     gatgcgtatc tttgataaga ttatcttgta gcatctccga cgctacctgt cctgatatca      1320
     atgattggta agtgcaattc acagtttatg ttgtagtagt tagtagttac tattcatgtg      1380
     cagttcagat cggcttttct tgcatttcgc gttgtcttgg atctgaaaag gaagtttctc      1440
     aatcggtcgt gtatttctct ctctctgttt tttttttttt ttttttaata tgtcggacca      1500
     aaactgctat ggttgtggta ggagtttaaa aaagaaatcg cgacgcgaaa aggttgtgcg      1560
     tggaaataag tggctttgtt taaagtgtga ccttccatca tcccggaaaa tctcgtgtcg      1620
     tagattaagc ctaccagtgg aaattttacc accaattttt ccagagaatc ctgcacaagc      1680
     ggaaattcta ccagaggagg agaatccagg tgaagctgac ttcacggaaa cgagggtaaa      1740
     attggaccta aaatcaacca ttaaatcaag atccaggtgt atttttttgt gtccagattc      1800
     acatcgtaaa aatttaacaa tcatcagtaa agcgctcaga gagcatgttc ttataaagta      1860
     caagctgttc attcatgaaa aatctcgatg ttgtagtgcg catttggtgg atggtgcttt      1920
     tgacgaagac tttatgaccg acttttctga aaggtgcgac tcggaaaatt ctcttttttc      1980
     gggcgcggaa atcgatcaaa ttcttgcggt gacattgaat cgaagtgcta aaaatgataa      2040
     cgaaactaac ttttatgata atttatcacc cgaaaaattt gaactgtggt tcggagtgga      2100
     caaaaaaaat tttgacgatt tgtgcgcgta cctacccggt gtaaaaaaaa acggagttaa      2160
     attgtgtgcg tatcttttgc atttatacgt gaacttgtcg ttcgaccgaa tcggtgcctt      2220
     gctgaacgtt catcgatcga cggtttctcg atacctatcc gactgtagga ctcttttgac      2280
     ccaaaagttt gtgtcggttc acctagacaa tatctctcgt gaaacaattt tttcacagac      2340
     aacgaaaata tctaaaattt tgaaccaaat tccacaaaat tcggatcgcg ttattacggt      2400
     gtgggacggg acgtatctct tcctgcctaa aagtagcaat tttcgtttcc aacgtaaaac      2460
     gttcggtggt cagaaaaaaa gaaattactg taagccgatg atagtcacga cgactaatgg      2520
     gctcattgtg gatattttag gcccccaaac actttgggca ggatctgttt ccgatgctga      2580
     tattttaaaa agtgtcatga ctttgccttt tttcaaggat ttttataagc ccggtgacat      2640
     tttcattctc gatcgtggtt ttgagcgggt taagcctgac ttggaagctc ttgacttttc      2700
     tgtctcaata ccgtgtctaa atcgaagtga tcatcagtta tccactctcg aagcaaacga      2760
     gagccgcatc tgcaccaagc aacgttggat agttgaagct accaacagga gcctcaaacg      2820
     cttcggcatc ttcaacagca ctgtatctgc ccatgaatat gtccacttgt atgcggactt      2880
     gaaggttgcc ggtgctatac acaatgtctt ttttacccgt atgtacagtg acgatgacga      2940
     cgaagaggta gctagacaaa tgcttgagaa gcttaatgag cccaatttga tgcagcaact      3000
     cgttatggat gagtccctca caagacggag taaaactttt gagactctaa cttcagatca      3060
     ctattcagat ttccctgtac ggactgtcga acaattccga aaattttctg gaaagtatca      3120
     attatgtcta gcccggtcgt acatagccga tcattttcaa gccggaaaat atgaattttg      3180
     tgtgtgtaaa gatcagcttc agccagattt ttccaaatac ggactcagag tggcgaatcc      3240
     ccttttcatc aagtgcaaat tactgtcgcg gcataagtcc gaaaaatatt attgcatttt      3300
     cattcttatt gataaggatc gatcagctga cacgtcaata accgcgtact attgcacttg      3360
     taaaaatggt gctcggactg tgggtgcgtg tgcccacacg atagcgattt tgtggttcct      3420
     cggttgcggg cgtcatattg aagacctgaa agggccctcc gacttcctta atgcttgctt      3480
     tcctcttatt cccttctctg aggacgattc ggatgacgag catgataatg acgaatatcg      3540
     cagatgctcc tcttcagtaa ggtaactctc ccaccagtta attattttat tttttttaag      3600
     tcaatttatg ggtccttttt tccctttact ttcttttctt ctgtatcgga gatagcggtc      3660
     attagagtaa gcaatcaagt catcgttctt tctgtaaccc ccccccccaa attttttttt      3720
     tttttttttt tttttttttt tttttttttt tttttttttt tttttttttt ttttttttct      3780
     ctttttttct ctctctctct cgggattttt attaactacg aatatagtta atttaagcga      3840
     attttccttg ttgtttaact ttcgttttat tttctcggca tatttaattt cctttcatta      3900
     atttttttga ttatgttttt ggaaatttat ttattcgtat atagtttctc cttactttta      3960
     tcttgttgct aatatttact tgctttcaaa attgattact ttgctaaata agtgatggta      4020
     gaaaaaaata atgatattta gaaaacgtta tgatatcaca aaaaaaagag tcgagagaac      4080
     gaacgcatcg agctagccgg taacgcacga gtacattcag ttccgtgctc tagcataagc      4140
     cggagtagac gtgacaacgc tgcgtagcgc gagaagtccg acgcacgaga gaactcctcc      4200
     agagttgccg cgcgcgcagt ttaaaacagc cgattttccc gaccttcgct cctttccgct      4260
     cttat                                                                  4265
//
ID   ISL2EU-6_CFl repbase;    DNA;    INV; 2743 BP.
XX
AC   AEAB01000080;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-6_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2743
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01000080; Positions    3357     615.
XX
CC   Single copy. 162-bp TIRs. Both termini are likely truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(317..837,1051..2359)
FT                 /product="ISL2EU-6_CFl_1p"
FT                 /note="transposase."
FT                 /translation="MAFRNLFTCFVCDGRFQARQMRRIDGNDNAVKRDIAI
FT                 FRRDMTGRLALKVTDLTRLCVNCNRYILDEIDLLERDPTCMKINVLSQTRS
FT                 ASCLICNTEHGAQRLSMQARVNIFITSDIYLPSNVRSCQNHLDGKGFLLRP
FT                 LHTGLRFINRPYVIRGQELQMFIQELRKNVLTSSYRQLVSSVIQKVRQSLL
FT                 SRFVPQHIGFQALTRQDYIQQHVTDFANTLYNAEPNIPKAIAYVDGTYAYI
FT                 EKSRNFRVLRQSYCVHKGHHLIKPVLVVAPDDYILDIQGPYFSDSRNNDAA
FT                 LLRDQFERDVNGMREWFQANDILIVDRGYRDAVELLERLDIRYHMPELLER
FT                 RQRQLTTAEANSSRLVTKTRWIVEVRNGHIKSIFHFLAQVIRMPHTSYIGD
FT                 FYRIAGGIINRYHEPIQMEGADAELALTLLARSQEVNIVQIRVEAENLQRR
FT                 RRAEWIRLDHNQLIDFPELTFEYLQNLTLGIYQLLLAPSYIQDTLLREENV
FT                 FQVDMHAIEPGFVRFRLYSRFRNNTIHQQWIAYITGDDNNDEEENPIMGYY
FT                 CTCRTGARTLGTCAHIASILWYLGFARHQQQVKYPRISLLYQILDAAERPL
FT                 PDLNNLPEIVN*"
XX
SQ   Sequence 2743 BP; 846 A; 515 C; 563 G; 819 T; 0 other;
     cccgcaaatt ccttatgtaa aatggctctc agtcgatttg cctgaaactg aagtatgttg        60
     ctgctcgtgg cctactgatc aaatgttctc acgggcgcaa ctcaaaataa tgggccagtt       120
     tcgagctaga gagcgctgaa gtcgtcaaca tacgtaatac gttaaggatt tgtgtaaatg       180
     atattgttaa cgcgtaagtg cgtctgtgta tgtctgtgcg tgcgaaagat caaaggtcac       240
     cctctttctt gctacaagca gacacttcgt ttatttggga atattattat ttcttatatt       300
     tcactcaatc gacatcatgg ctttccgcaa cctatttacc tgctttgttt gcgatggtcg       360
     ctttcaagcg aggcaaatgc gtcgtattga cggaaatgat aatgccgtca agagagatat       420
     tgctatcttt cgtcgtgaca tgactggccg tctagcttta aaggtaactg atctcaccag       480
     attatgcgta aactgtaacc gttatatcct tgacgagatc gatcttttgg agcgagatcc       540
     tacatgtatg aaaatcaatg tactgtcaca aactcgcagt gcatcatgct tgatttgtaa       600
     cacagaacac ggcgcacaga ggctttccat gcaagctcga gtcaatatat tcatcacttc       660
     agacatttac cttcccagca atgttagatc ttgtcaaaat catttagatg gaaaaggctt       720
     tcttttgagg ccgctacata ctggtttaag gtttatcaat agaccatatg ttataagagg       780
     tcaagagctg caaatgttta ttcaagaact gcggaaaaat gtattgacat cttcatagta       840
     tgaagatgaa gaagattttg atgaagaaga tttcaaggtc atgacttctt taacgaaagc       900
     gcagtttcgt gacctcttct tattttgcga tccagtaccc aaacaagagg ttaattcata       960
     cgtcaaaaag aaagatcttc taactttttt aacaaaaatg agacaaggta tttgtgatga      1020
     cgttttaaag attatcttta attattccag tcgacagtta gtcagttctg tgatccaaaa      1080
     agtgagacag tcattattat caagatttgt gcctcagcat atcggtttcc aagctcttac      1140
     aaggcaggat tatatacaac aacatgtgac cgatttcgct aatactttat ataatgcgga      1200
     accaaatatt cccaaggcta tcgcatatgt cgatggcacc tatgcataca tcgaaaaaag      1260
     cagaaatttt cgggtgttga ggcaatctta ttgtgtgcat aaaggccatc atttaataaa      1320
     accggtattg gtagtggcac cagacgacta tatcctcgat attcaaggtc cctacttttc      1380
     cgattctcga aataatgatg ctgcattgtt acgagatcag ttcgagagag atgttaatgg      1440
     gatgagagaa tggtttcagg caaatgatat tttgatcgtt gaccggggat atcgtgatgc      1500
     ggttgaacta ttggaacgat tggatatacg ttatcacatg ccggaactac ttgaaagaag      1560
     acaacgtcaa ttaacaacag cagaagcgaa ttcatccagg ttagtgacca aaactagatg      1620
     gattgtggaa gttcgaaacg gtcatattaa aagtattttc cattttttag cccaagtaat      1680
     cagaatgccg catacttcct atattggtga tttctatcgt atagctggtg gtattataaa      1740
     tcgatatcat gagcctatac agatggaggg tgctgatgct gagttggctt taacattact      1800
     agcgaggtca caagaggtaa atatagtcca gatacgggtg gaagcagaaa atctacagcg      1860
     tcggagaaga gctgaatgga ttcgtcttga ccacaatcaa cttatagatt ttcctgagct      1920
     tacttttgaa tatttacaaa atcttacatt gggaatatat caactattat tggctccctc      1980
     atatattcaa gatacattgc ttagagagga aaacgttttt caggtagaca tgcatgcgat      2040
     cgagccaggt ttcgtaagat ttcgattata ttctcgtttc agaaataaca ctattcacca      2100
     acaatggatc gcttatatta caggagatga caataacgat gaagaagaaa atccgattat      2160
     gggttattat tgcacgtgca gaacaggagc gagaacttta ggtacgtgtg ctcatatcgc      2220
     tagtatcttg tggtaccttg gatttgcaag acatcaacaa caggtcaaat atccaagaat      2280
     atcactgtta taccaaatac ttgacgctgc tgaaaggcca ctaccggatt tgaataacct      2340
     acccgaaatc gttaactaac aagattagta taatatgtcc tataccaatg gtgagaggca      2400
     aggggactca ccttataatc aagcaccccg aagggatcat attctcaaaa cgtcctcgtc      2460
     gttgatcctg gttaacgcta atattgagaa aatagatgaa taattcctta tatgtcacta      2520
     gagtgtacta catattacag tgtattacat attagagtgt tacatattag agtcacatat      2580
     tacatattac gtatgttgac gacttcagcg ctctctagct cgaaactggc ccattatttt      2640
     gagttgcgcc cgtgagaaca tttgatcagt aggccacgag cagcaacata cttcagtttc      2700
     aggcaaatcg actgagagcc attttacata aggaatttgc ggg                        2743
//
ID   ISL2EU-7N1_BTa repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-7N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1630
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 639-639 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 1630 BP; 420 A; 394 C; 389 G; 425 T; 2 other;
     gaggttgttc caaaaacgcc gattttggcc cccccctgga tttggcccaa actttgctca        60
     gatgttgtac taagtgtccc cgatgcttgg gcaaaatttc agccccctcg gataattagg       120
     ggggaggggg caggggggca aagttgcaat tttttcaaaa ctttaaaaat cgatatctcg       180
     cgaacggttt gagtgtaagt gttgcggttt gcgctaaaaa acgttaaaaa atattctcta       240
     caagaatatt aatgctgttt gcaaggttgc gtaatttatc gcggtcataa atcgattttt       300
     tcgattttga aggttcgact ttttttcgtt tttcgtctct cctctccagg cgatcgttgc       360
     tacgtgaata aaaaccggtt gaggtgattc tccatgaaat tctgcatcta ccacactttg       420
     tttgaccttg gggaaacgat tcgttcktga gttatagcga tttttctgcg cgttmccggt       480
     tacgcgcggg cggcatatcg gcggcgctcc atcccgcccg ggcgaggcag aggttgtttc       540
     accgctaggg ccttatattc atgctgtagg ctgtaattat cgatattttc tcctcccccc       600
     acccttcccc tccaataaat atttttttaa tacttcgtta tacagggtgt cccagaccac       660
     ccgtaacagg tctttttctc ggttggttta ggtagtacga agtgggggac cgcggggtta       720
     aacagggaat tgaccccaag gaatccgaat ttcacggtcc cgaagccccc cttccccccc       780
     ttggggggta aagagggggt cacgatcccc aaagtcggga gacattgtgc ctcccccttt       840
     taccccccga gggtggctag gggggcttcg ggaccgtgaa attcggattc cttggggtca       900
     attccctgtt taaccccgcg gtcccccact tcgtactacc taaaccaacc gagaaaaaga       960
     cctgttacgg gtggtctggg acaccctgta taacgaagta ttaaaaaaat atttattgga      1020
     ggggaagggt ggggggagga gaaaatatcg ataattacag cctacagcat gaatataagg      1080
     ccctagcggt gaaacaacct ctgcctcgcc cgtgcgggat ggagcgccgc cgatatgccg      1140
     cccgcgcgta accggtaacg cgcagaaaaa tcgctataac tcacgaacga atcgtttccc      1200
     caaggtcaaa caaagtgtgg tagatgcaga atttcatgga gaatcacctc aaccggtttt      1260
     tattcacgta gcaacgatcg cctggagagg agagacgaaa aacgaaaaaa agtcgaacct      1320
     tcaaaatcga aaaaatcgat ttatgaccgc gataaattac gcaaccttgc aaacagcatt      1380
     aatattcttg tagagaatat tttttaacgt tttttagcgc aaaccgcaac acttacactc      1440
     aaaccgttcg cgagatatcg atttttaaag ttttgaaaaa attgcaactt tgcccccctg      1500
     ccccctcccc cctaattatc cgagggggct gaaattttgc ccaagcatcg gggacactta      1560
     gtacaacatc tgagcaaagt ttgggccaaa tccagggggg ggccaaaatc ggcgtttttg      1620
     gaacaacctc                                                             1630
//
ID   ISL2EU-7_BTa repbase;    DNA;    INV; 3098 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-7_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3098
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 665-665 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. 5'-end is indeterminate. TSDs are supposed to be
CC   0-bp long. Target are AAATTT, TE inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..2284
FT                 /product="ISL2EU-7_BTa_1p"
FT                 /translation="MTGFEGKVKCESCAISLEKKPRRDVVFSDAKYYCKKC
FT                 YKDLKDRCSSADSDPKPEIKIQLKSLKSTIRSHDKCIFQCPRSELKSLCRI
FT                 NKELRAEILIKHRLVIHEENRCCADHFFDESFSDDFIADFVSKCDLSRSMF
FT                 TLTELDDLFSILCNPENFVKNESGASNDFFFNLSDESLSIWTGLERSDFDD
FT                 LCKHVDDKKASLKTGIYLMSLYAGLTQREICAISGLPLGTVNRYISECRVK
FT                 LTEKFVPLHVGHYSREEIRKNTTEMSKVLNNIQPHDDTIATIWDGTYIYLN
FT                 KSSHFRFQRVSYSGHKKKNYLKPMVAVTTNGKIVDIFGPECLWAGSTSDAD
FT                 ILDYILKLPFFDNLFKQNDIFLLDRGFERVKPALEEKGYQVSIPCLRKDNN
FT                 QLTTLEANRSRLCTKQRWVVEWVNSSLKRFKYLKRTVTTVQVPHLYEDVRI
FT                 AAALHNSFFSRQCSDEDNQEVALRMLADLEKENLVKILVEEQSLIRRTKCF
FT                 EKLSRDHYEEFPIWTPDQIKSYSGTYQVSLARSYIADHLFAGKYQFFVSKD
FT                 LDLPHFSSVGICVKKPLFVKAKLESRHKSNKVYSIFILIELEGRTIFNSLI
FT                 GHFCTCKNGARTIGSCAHVLAIAWFRVAGATMETSEAHLPF"
XX
SQ   Sequence 3098 BP; 940 A; 609 C; 654 G; 895 T; 0 other;
     aaaaaaaaaa aaaaaaaaaa acatgcttgc acgaccctat tgttcgcgca ccatttttgc        60
     aagtagatta agttacagcc tgtatttcag atataatttt tggtgtaatt ctaatcatgc       120
     acacccgcga gaatcgcaaa caattttctt ccttacttgt caacaaggta tgtttatctg       180
     atctgattgg cgtgaggatg cacttgcact gataagcatc tccgataggt tgcaggtgat       240
     attgctgatt tcagagggaa aacatctttt agtatccgtt tcagtctcgt cgggatttta       300
     tcacggataa tttttcgcag ttattattac ttatttcttt tcgttttggt cccgtattaa       360
     ctgtctaatg accggatttg aggggaaagt gaagtgcgaa tcgtgcgcta tctcattaga       420
     gaaaaagccg aggagagacg tcgttttttc ggacgcgaaa tattattgta agaaatgtta       480
     caaagactta aaggatcgtt gctcatcggc cgattccgat cctaaacctg aaatcaaaat       540
     tcagctaaaa tctttgaaat cgaccattcg ttcgcatgat aagtgcattt ttcagtgtcc       600
     gcgctcagag cttaaatcgt tgtgccgcat aaataaggaa ttacgtgcag aaattcttat       660
     taaacatcgc ttggtcatac acgaggagaa tcgatgctgt gcggatcatt tttttgatga       720
     gtctttttct gacgatttta tcgccgattt tgtgtctaaa tgtgatctca gtcgttcaat       780
     gttcactttg acggagttag atgatctttt ttctattttg tgtaaccccg aaaactttgt       840
     aaaaaatgaa agtggagcaa gtaatgattt ttttttcaac ctaagtgatg agagtctaag       900
     tatttggaca ggcctcgaga gatctgattt tgatgatttg tgtaagcatg tcgatgataa       960
     aaaggcttcc ctgaaaactg gtatttattt aatgagcttg tatgcaggtt tgacgcagcg      1020
     tgaaatctgt gccatatcag gattaccttt agggaccgta aaccgttaca tatccgagtg      1080
     ccgagttaag ctgacggaaa aattcgttcc cctccatgta ggtcactatt ctcgggaaga      1140
     aattaggaaa aacacgactg agatgtccaa agttttgaac aatatccaac cccatgatga      1200
     tacgattgcc acgatctggg atggcaccta catctatctc aacaaaagtt cccatttccg      1260
     gttccaaaga gtttcgtaca gcggccacaa aaaaaagaac taccttaagc caatggtggc      1320
     tgttacgacg aatggtaaaa ttgtcgatat tttcggtcct gaatgtttat gggccggaag      1380
     cacttcggat gccgacatcc ttgattacat tctaaagttg cctttctttg ataatctttt      1440
     taaacaaaat gatatctttt tactagacag agggttcgaa cgtgtaaaac cggcattgga      1500
     agaaaaaggc taccaagtgt cgatcccttg tctgagaaaa gataacaatc aattgacaac      1560
     acttgaagca aataggtctc gattgtgtac aaagcagaga tgggttgtgg agtgggtcaa      1620
     cagtagtctc aagaggttca aatatctgaa aagaactgtt accactgtcc aagttcctca      1680
     tctttatgaa gatgttcgaa ttgctgctgc actacataat tcgtttttct cgcgacaatg      1740
     cagtgatgaa gataatcagg aggtcgcttt aagaatgctc gcggatttag aaaaggagaa      1800
     tttggtaaaa attttagtgg aagaacaatc actaattcgg agaacaaagt gttttgaaaa      1860
     actaagtaga gatcattatg aagagttccc gatttggaca ccagaccaaa tcaaatctta      1920
     cagtggtacg tatcaggtgt cacttgcgcg atcgtacatt gccgatcatc tattcgccgg      1980
     aaaatatcaa ttttttgtaa gcaaagattt agatcttccg cacttttctt ctgttggcat      2040
     ttgcgtcaaa aaaccgcttt ttgtaaaagc taagctggaa tctagacaca agtcaaacaa      2100
     agtctattcc attttcattt tgattgaatt ggagggtaga accatcttta attcactgat      2160
     tggacatttt tgtacgtgca aaaatggtgc gagaacaata gggtcgtgcg cgcatgttct      2220
     cgccatcgcg tggttccgag ttgcgggcgc cacgatggag acttcagaag cccatctgcc      2280
     tttttaaatc gtcactttcc gctcctgaaa cctacctccg aggataccag cagtgacgat      2340
     tcaaacaatg atggcaactg aaggtaagga aatagccgct tctagttaat tttttcttac      2400
     tttctctttt aaagcagcgc gatgattttt tttttttttt aaaaacgaac caacgttaat      2460
     aacgaagtgt acaaaaatat ttattacagg aaaagggatg gggagagaga aaatatcgat      2520
     aatcacagcg tactgcatga atataaggcc ctagcggtga aacaacctct ccctcgcccg      2580
     cgcggaatgg agcgccgccg atatgccgcg cgcgcgtaac cgggaacgcg tagaaaaatc      2640
     gctataactc acgaacgaat cgtttcccca aggtcaaaca aagtgtggca gatgcagaat      2700
     ttcatggaga atcatctcaa caggttttta ttcacgtagc aacgatcgcc taaagaggag      2760
     agacgaaaaa cgagaaaaaa tcgaaccgtc aaaatcgaaa aaatcgattt atgactatga      2820
     taaattacgc aaccgtgcaa acaacactga tattcttgta gagaatattt tttgacgttt      2880
     tttagcgcaa accgcaacac ttacactcaa accgttcgcg agatatcgaa ttttgaagtt      2940
     ttgaaaaaac tgcaactttg cccccctgcc ccctcccccc taattatccg agggggctga      3000
     aattttgccc aagcatcggg gacacttagt acaacatctg agcagagttt gggccaaatc      3060
     cagggggggg ccaaaatcgg cgtttttgga acaacctc                              3098
//
ID   ISL2EU-7_CFl repbase;    DNA;    INV; 2905 BP.
XX
AC   AEAB01003384;
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-7_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2905
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Direct Submission to Repbase Update (28-NOV-2011).
XX
DR   EMBL/GenBank/DDBJ; AEAB01003384; Positions    1061    3965.
XX
CC   Single copy. ~70-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(148..588,662..682)
FT                 /product="ISL2EU-7_CFl_1p"
FT                 /translation="MSSRDITTSAAAYIILHILRKRGVKRRPKRWWITQLY
FT                 NSRKISGAHSLLANLKFQESSEQFRNFIWMSSEDFKFLLNAIAPKIQKMDT
FT                 AMRKAVTVTERLAITLRFLATGDSYTSLQYLFKVSKQLISVIVPEVCGALI
FT                 EVLKENVKNTHKFD*"
FT   CDS           join(2746..2461,2379..2282,1323..748)
FT                 /product="ISL2EU-7_CFl_2p"
FT                 /note="transposase."
FT                 /translation="MLSLDVYVERKSRAGKMKWTNEKALKLIDEYEKVPEL
FT                 WDAKHPLHFNRNKKLDAWEIIANNMKMDVAALKQKIGSLLGSFRREKAKGK
FT                 KSIGTGKARKDIYISKWFAFERMHFLLDKDEPRTTMDTDNENNEEQESDEF
FT                 PLNLNSQEDLSNSGDQEIDDEPSNDSTIEKMPFIAPETKQKKRKLHDKKDD
FT                 AKLEEAFKILKESAARKEIPPDDCTIYSQHVANKLRNYSKNTRIQVEHSIN
FT                 NILFAADMGKYDYPNPTFNYENVPASNYRSTHFYDNEILTSSPLPSPTFSN
FT                 ASTAGSISSCPTPIPDFNIQNKNFEQL*"
XX
SQ   Sequence 2905 BP; 951 A; 466 C; 525 G; 963 T; 0 other;
     aaaggtacgt actgacgtga gcatttttgc gcgcacgaac gatttgcgcg cacgaatgct        60
     tgtgcgtgga aacttttatc gatgtgaacg atatttgttc gtgcgcgcaa aactgtgctc       120
     cagtcgttcg tcagagtcag tagcgaaatg tcgtcaagag acatcaccac atcagctgca       180
     gcatatatta tattacatat tttgcgcaag cgtggtgtaa aaaggcggcc taagcgatgg       240
     tggattacac agctatataa tagcaggaaa ataagtggtg ctcatagcct gctagctaat       300
     ttaaagtttc aagagagcag cgaacaattt cgtaacttta tttggatgtc atctgaagat       360
     tttaaatttt tattgaatgc tattgctcca aaaatacaga aaatggatac tgcaatgcga       420
     aaagctgtca ccgttaccga aagattagct ataactctac gttttttagc aacgggagat       480
     tcgtatacaa gtctacaata tctgtttaaa gtgtcaaaac agttgatatc tgtaattgtt       540
     cctgaagttt gtggagcgct tattgaagtc ttgaaagaaa acgtaaaggt aagaatgttg       600
     acatttattt aacttttaaa gattaaaaca tatataatac atattttaat aataatttta       660
     gaatacacat aaatttgatt aaagtaatta agagctaagt aattaaaatt aagtagtaag       720
     caataatgga aagataattt ttaaaaatca taattgttca aaatttttgt tttgtatatt       780
     aaaatccggt ataggtgtag ggcagctaga aattgaacct gcggtacttg cattagaaaa       840
     tgttggagac ggtagtggac tagatgttaa aatttcatta tcataaaaat gtgtagaacg       900
     ataatttgaa gctggaacat tttcataatt aaaagtagga ttaggatagt cgtattttcc       960
     catatcagct gcgaataaaa tattgtttat agaatgttca acttgtatcc gagtattctt      1020
     gctataattt ctaagtttat tggctacatg ttgcgaatat atggtacaat catcaggtgg      1080
     tatttctttc cttgcagccg attctttaag aattttaaat gcttcttcca atttcgcgtc      1140
     atccttttta tcgtgcagtt ttcttttctt ttgtttcgtt tctggagcaa taaacggcat      1200
     tttttctatt gttgagtcat ttgagggctc atcatctatc tcttgatcgc ctgaattcga      1260
     tagatcttct tgagaattta aatttaatgg gaactcgtca ctttcttgct cttcgttatt      1320
     ctcctaaaaa tatttaaaaa tttttatata ttatttaaat ttttcgtatt taataattta      1380
     tcattcgagc cttatcgtaa ttaataattc taaataatta tattttattt agatgccatc      1440
     aacccaagaa gaatggttaa caatttcacg ggaattcgaa aaaatgtgga attttccgaa      1500
     ttgcatagga gcaatggatg gaaaacacgt agtgttgcaa gctccaatga acagtggaag      1560
     cgaatttttt aattataaat cagattttag tattgtatta tttgcggttg ttgacgctga      1620
     ttacaatttt atattcgcgg atgtgggatg tcaaggtaga atttctgacg gaggagtttt      1680
     aaaaaattgc aaattatgga agaaactcac aacaaatagt ttaagcttac cagaagaatc      1740
     gaatttacaa gggagaagca agaaaatacc atatgtattt ctcggagatg aggcatttgc      1800
     tttgagcgaa aatttaatga agccattctc aggaacacat cataaaggat cggcggaaag      1860
     aatattcaac tatcgactca gcagagcacg cagggtagtt gaaaatgtat ttggaatttg      1920
     ttcagcagtg ttccgagtat tacgaaaacc aatattattg aagccggaaa aagcggagct      1980
     tattgtaatg acgataattt gtctccataa ttttttaaga aagagcaaaa catcacgcga      2040
     tatatacacc ccttcaacga gattcgattc agaacagaat ggtgtattag taggaggtag      2100
     ctggagacaa ggaaacgaac aaataaattc gttaatacca attagaaacg tcccacgaag      2160
     atcgacatta aacgccaaag aaattcgaga tgaatttaaa gaatatttta ttacaaatgg      2220
     acgtttagat tggcaagacg atgcttaatt taatttaatt acttaaatat taattactta      2280
     cattatctgt atccattgtt gtgcggggtt catccttatc caataaaaaa tgcattcttt      2340
     caaaagcaaa ccattttgaa atatatatat ctttacgagc tggaaaaaat aatttataat      2400
     ttacaattta cgatatatgt atagaaatta tttagaaata acaaaaatat atatgaatac      2460
     cttttcctgt tccaatactt tttttaccct tcgctttttc tctgcgaaag gatcctagta      2520
     gactaccaat tttttgtttt aatgcagcta cgtccatttt catattattg gcaattattt      2580
     cccacgcatc taatttttta ttgcggttaa aatgaagcgg atgtttagca tcccacaact      2640
     ctggtacttt ctcatactca tctattaatt ttagagcttt ttcgtttgtc cacttcattt      2700
     ttcccgcacg actctttcgt tccacgtaca cgtccaaact gagcatcgct tcgcacgaaa      2760
     atcatttgat gtaccgacaa gcgacggatc gcattcgtgc gtgctaacaa tgtgcgtcaa      2820
     aacaaaatcg acacgtccag acgcgagcat tcgtgcgcgc aaatcgttcg tgcgcgcaaa      2880
     aatgctcacg tcagtacgta ccttt                                            2905
//
ID   ISL2EU-8N1_BTa repbase;    DNA;    INV; 2066 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-8N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2066
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 640-640 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 2066 BP; 620 A; 427 C; 430 G; 589 T; 0 other;
     gaggttgttc catctaccat tgaaactggg ccccgaatga aatctcctca tcttttcagg        60
     tatcaaaggg catggtcagg gacacccaaa aatggttgaa ttttttccaa attcccccct       120
     ggggaggggg ggcggggggt tatatgaaaa acggtttttt ggctataact tttgaacggt       180
     ttgagatatc gatttgaact tttttttaaa tgaaaggtcg tttaaagagc tttcttttgg       240
     tatattatgt ttaatagtta ggtcaagttt tgaccaattt atggcctgtc aaaaattttc       300
     catgagtcca aaaatcagat ttctgtagtt tagagcagcg acgatcgcat gcagatgaac       360
     aaaaaactgt tcaacttata gccctctctc tgacggttaa aatgagccca agatcatctt       420
     ggggaaacga tttgtctccg agttatgctt cttcaaagtt ggcgcggcgg ggtccgcttc       480
     cgcggggcag cgctccggag tacgatagtt cactcccacc cccctcccgt catgccacgc       540
     gacgcaaacc gaggaagact acctttaatg atcatttgaa cagataaatg cacacaatat       600
     acgctattat ggtgtacaag tattattaaa attatattga aaacgctcta taaaacgaga       660
     agcaatatac ctggatccgg caatttgttt gacgactatc gcatagtgtc cgcgatacat       720
     aatttatatt ttcaacgcct gcaaagtgat ggtgacgacg caaaaattgc cattcaaatg       780
     ctccaaaaat taaatgagcc gaatattgtg caacaaattg ttgaggacga gaaatggctc       840
     cgaaaaaaag tagtttttga aaacctgacg acagatcatt ttgaacaatt agaacagtgg       900
     aggagcgaag atcttgacac cctctcggga agttatcaaa ttggacttgc agcaagtcat       960
     attgcagacc attttgctga tggaaaatat tgctttcaag tgacgaagga taactttttg      1020
     ccagattttc aaaaatatga tatttccgta aattcgcctc tttttcttcg atcgcggatc      1080
     ctatcgaggc ataaatcaaa aaaagaatat catatattta tattaatcga caccagtcaa      1140
     aaatccagcg aggccattaa agcaagttac tgcacatgta agaacggtgc gcgtaccatc      1200
     aatccttgtg ctcacgtcta actatactgt ggtatttgtt ttacgggcgc tatcacaaaa      1260
     aaccagcgcc ttcagccttt ttgaacgagt gcttccctct cagaaaagtc gattttggct      1320
     tttcagacga cgaagatgag gatgaaaatg cggatcacac tgccgatgat cctatggatt      1380
     gcggtgatga taaattcggt gagattccac tcttctattt agtatattaa tataatttta      1440
     ataatacttg tacaccataa tagcgtatat tgtgtgcatt tatctgttca aatgatcatt      1500
     aaaggtagtc ttcctcggtt tgcgtcgcgt ggcatgacgg gaggggggtg ggagtgaact      1560
     atcgtactcc ggagcgctgc cccgcggaag cggaccccgc cgcgccaact ttgaagaagc      1620
     ataactcgga gacaaatcgt ttccccaaga tgatcttggg ctcattttaa ccgtcagaga      1680
     gagggctata agttgaacag ttttttgttc atctgcatgc gatcgtcgct gctctaaact      1740
     acagaaatct gatttttgga ctcatggaaa atttttgaca ggccataaat tggtcaaaac      1800
     ttgacctaac tattaaacat aatataccaa aagaaagctc tttaaacgac ctttcattta      1860
     aaaaaaagtt caaatcgata tctcaaaccg ttcaaaagtt atagccaaaa aaccgttttt      1920
     catataaccc cccgcccccc ctccccaggg gggaatttgg aaaaaattca accatttttg      1980
     ggtgtccctg accatgccct ttgatacctg aaaagatgag gagatttcat tcggggccca      2040
     gtttcaatgg tagatggaac aacctc                                           2066
//
ID   ISL2EU-8_BTa repbase;    DNA;    INV; 2686 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; ISL2EU-8_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2686
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 666-666 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy. 3'-end is indeterminate. TSDs are supposed to be
CC   0-bp long. Target are AAATTT, TE inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           948..2684
FT                 /product="ISL2EU-8_BTa_1p"
FT                 /translation="MKWIVYQFFGVRYAITMSLDEKCHVCGKSVAKKPRLE
FT                 KVYSNDLVFCKPCYKKPAGPRNVLKYDSSEKESVTLDIKSTPKTERFCVFC
FT                 KSEAGRERIPKHLRALALRKYRLLIYEGSRCCANHILENDFEEDCINQVFK
FT                 QDLKSAELTPTEITRVIDELRVCEFSGPVEDHTHKNFFSETGSVTTLTGLE
FT                 HDDFRDLAKSIVPQDEDEGCRLLGAYLVHLYCGFSMRVIATILTVSLSTVS
FT                 RYISKCRALLLAHCVNILDSVDRKKALAETTNIARTLYGVAESDDTLITVW
FT                 DATYIYLFKSVNFLFQRATYSGHKKKNYLKPMMCVTTNGTIINTLGRVRSN
FT                 DFWAGSTSDADILKAIMSTEWFKSFFKRGDIFVLDRGFENVKSDLEAAGFR
FT                 VYIPCLKKGNAQLSTKDANESRLCTKVRWVVEVVNSSIKRFRHFRSSVISS
FT                 EVPNLFDDYRIVSAIHNLYFQRLQSDGDDAKIAIQMLQKLNEPNIVQQIVE
FT                 TEKWLRKKVVFENLTTDHFKQLEQWRSEDLDTLSGSYQIGLAASYIADHFA
FT                 NGKYCFQVTKDNFLPDFQKYDISVNSPLFLRS"
XX
SQ   Sequence 2686 BP; 799 A; 504 C; 589 G; 794 T; 0 other;
     gaggttgttc catctaccat tgaaactggg ccccgaatga aatctcctca tcttttcagg        60
     tatcaaaggg catggtcagg gacacccaaa aatggttgaa ttttttccaa attcccccct       120
     ggggaggggg ggcggggggt tatatgaaaa acggtttttt ggccataact tttgaacggt       180
     ttgagatatc gatttgaact tttttttaaa tgaaaggtcg tttaaagagc tttcttttgg       240
     tatattatgt ttaatagtta ggtcaatttt tgaccaattt atggcctgtc aaaaattttc       300
     catgagtcca aaaatcagat ttctgtagtt tagagcagcg acgatcgcat gcagatgaac       360
     aaaaaactgt tcaacttata gtcctctctc tgacggttaa aatgagccca agatcatctt       420
     ggggaaacga tttgtctccg agttatgctt cttcaaagtt ggcgcggcgg ggtccgcttc       480
     cgcggggcag cgctccggag tacgatagtt cactcccacc cccctcccgt catgccacgc       540
     gacgcaaacc gaggaagact acctttaatg atcatttgaa cagataaatg cacacaatat       600
     acgctattat gttgtacaag tattattaaa attaaattga aaacgctcca taaaatgaga       660
     agcaatatac ctggatccgg cactgtggtg ttaatttgcc gcaaagaata tatatttttt       720
     tttaaattgg tccatctttc aagtataacg caggctttaa aatttagtaa aattgcgtcg       780
     cccattgttg caatatgacg acgcaccgtc ggcgaacggc gtacaacgtt atcttgcata       840
     ttcacaagtg cacatatctg tatctccaag tcaacggcca gtcctgattt cgtctgaaag       900
     atgaaatact gataaggagc tgcaggtaag tatgatagat caatcgcatg aaatggatcg       960
     tctatcagtt tttcggtgtt cgttacgcta ttacgatgtc tctggacgaa aagtgtcacg      1020
     tgtgcggaaa atcggtggct aaaaaaccgc gtttagaaaa agtttattca aacgatttag      1080
     ttttttgcaa accgtgctac aaaaaaccag cggggccaag aaacgtcctt aagtacgact      1140
     cgtcggaaaa ggaatcggtt acgttggaca ttaagagtac gccaaaaacc gagcgttttt      1200
     gtgttttttg taaaagtgag gcgggtaggg agcgaatccc taagcattta cgtgcgctgg      1260
     cattaaggaa gtatagattg ctcatttacg aaggaagtag gtgctgtgcc aatcatatac      1320
     ttgagaacga ctttgaagag gactgtatca atcaagtttt taaacaagat ctgaaaagtg      1380
     cagaacttac accaaccgaa attacgagag tgattgatga gttgcgcgta tgtgaatttt      1440
     ccggacctgt cgaggatcac actcataaaa atttttttag tgaaacagga agtgtaacta      1500
     cactgactgg tttggagcat gatgattttc gagatctcgc aaaatctata gttcctcaag      1560
     atgaggatga aggctgtcgg cttcttggtg cgtatcttgt tcatttgtac tgcggtttca      1620
     gtatgcgagt cattgctact attttgacgg tctcgttgag cacagttagt cggtacattt      1680
     ctaaatgtcg cgccctatta cttgctcatt gcgtgaatat tttagacagt gttgatcgga      1740
     agaaggcact cgcagaaaca acgaacattg ctcgaacttt atacggtgta gctgaaagtg      1800
     atgatacatt aattacggtg tgggacgcaa cgtatatcta tcttttcaaa agtgttaatt      1860
     ttttatttca aagagcaact tactccgggc ataaaaagaa aaattattta aaacccatga      1920
     tgtgcgtgac tacgaatgga acaataatta acactctcgg tcgtgtccgc tccaacgatt      1980
     tctgggcggg tagtacaagt gatgccgata tccttaaagc aataatgtcc actgaatggt      2040
     tcaagtcatt ttttaaacgc ggcgatattt ttgtcctcga tcgcgggttt gaaaatgtaa      2100
     aatctgactt agaagctgcc ggttttcgag tctacatacc ttgtttaaaa aaaggtaacg      2160
     ctcagctttc aaccaaggac gccaacgaga gcagattatg caccaaagtt cgttgggtgg      2220
     ttgaagtagt gaatagttct attaaaagat ttcgacactt tcgttcatcg gtaatttcaa      2280
     gtgaagtgcc gaatttgttt gacgactatc gcatagtgtc cgcgatacat aatttatatt      2340
     ttcaacgcct gcaaagtgat ggtgacgacg caaaaattgc cattcaaatg ctccaaaagt      2400
     taaatgagcc taatattgtg caacaaattg ttgaaaccga aaaatggctc cgaaaaaaag      2460
     tagtttttga aaacctgacg acggatcatt ttaaacaatt agaacagtgg aggagcgaag      2520
     atcttgacac cctctcggga agttatcaaa ttggacttgc agcgagttat attgcagacc      2580
     attttgctaa tggaaaatat tgctttcaag tgacgaagga taactttttg ccagattttc      2640
     aaaaatatga tatttccgta aattcgcctc tttttcttcg atcgcg                     2686
//
ID   ISL2EU-9N1_BTa repbase;    DNA;    INV; 2470 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-9N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2470
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 641-641 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 2470 BP; 705 A; 525 C; 522 G; 718 T; 0 other;
     ggactctatg cacggacccc ccaaatttgc ccgtttcaaa agttaacgaa attcatacca        60
     gtgatagagg ggcacttccg gtctccaaat ccggggttgg tttagtcccc agccccccga       120
     gtgcgacgtt gccatttttt aaagttgaaa catgttaaac cccataactt ttgagcaatt       180
     gaagatacga aggtgcggtt tgtttgagtc gatagaacat aaaaagagct atcatttcgt       240
     atatagtttt tatccattgt tgccaaattt accccaaaat cgacaatttt tcgatttttt       300
     caaggtgcaa aaatacggtt aacctaaaaa agtcggtatt gggacaccac gtaggaaaat       360
     aaaaaacacg cgtaattaaa gcccttaatg tgagctttcc aacggtatat cggtttttcc       420
     ggggaaacga ttctatcgtg agatacaggc cttcaaagtc cgacttggcg tactttttgg       480
     aggtcccgcg tcattcgcac ctcaaaaaat tagtattgtg aacgctggta aaaaaacgaa       540
     actcacatgt aatgaaagct atttatgtga gcttttcaac ggtatattgg tttttccggg       600
     gaaacgattc tatcgcgaga tacaggcctt caaagtccga cttggcgtac tttttgaggt       660
     cccccgtcat tcgcacctca aaaaatcagt actgcgcacg tccataggaa aatgaaaatt       720
     acatgtaatg aaagtccttt gtatgggctt tccaacggta tatcggtttt tccgaggaaa       780
     cgattctatc gcgaggtaca ggcctttaaa gtccgacttg gcgtactttt tgaggtcccc       840
     cgtcattcgt acctcaaaaa atcagtactg cgcacgtcca taggaaaaag aaaattacat       900
     gtcatgaaag ccctttgtat gggctttcca acggtatatt ggcttttccg gggaaacagt       960
     tttgtcgcga gatacatgca ttcaatgttc actgtagcgg ggtttttagg taccctgcgc      1020
     ggcttgtttc ttcgcccatc gtgatggtgc aagtcccagg tcatattaaa taagacatga      1080
     aacagggaac taaatagaca atttttcgat cttgtttatc gattccctgc ctcggaaaaa      1140
     tcgatggtgt caaacactga acgtgaatga aaacactcag aacgcataaa gggtgcaaga      1200
     aaaaagtcgc aatctcaggg attgtgttat ataggggaga catgatacat agaaatggat      1260
     ccgttgtctc tgagattcca ttgaagtttt atgtttaata ttcgtttaaa atttggtaat      1320
     atacagttgg cagtatgtgt caggttcgtc tctatatctg catctctctc tgcatatctg      1380
     catctttctc tccctgctcg ccgctgcatg aacggcagcc tactttgata agaactcccc      1440
     tgtttcatgt aatattcaat aggacctgaa ccgctacaac gaacattcaa ggcatgcatc      1500
     tcgcgacaca aatttttccc cggaaaaacc aatataccgt tggaaagccc atacaaaggg      1560
     ctttcatgac gtgtaatttt cattttccta tggacgtgcg cagtactgat tttttttggt      1620
     gcgaatgacg ggggacctca aaaagtacgc caagtcggac tttaaaggcc tgtacctcgc      1680
     gatagaatcg tttcctcgga aaaaccgata taccgttgga aagcccatac aaaggacttt      1740
     cattacatgt aattttcatt ttcctatgga cgtgcgcagt actgattttt tgaggtgcga      1800
     atgacggggg acctcaaaaa gtacgccaag tcggactttg aaggcctgta tctcgcgata      1860
     gaatcgtttc cccggaaaaa ccaatatacc gttgaaaagc tcacataaat agctttcatt      1920
     acatgtgagt ttcgtttttc taccagcgtt cacaatacta attttttgag gtgcgaatga      1980
     cgcgggacct ccaaaaagta cgccaagtcg gactttgaag gcctgtatct cacgatagaa      2040
     tcgtttcccc ggaaaaaccg atataccgtt ggaaagctca cattaagggc tttaattacg      2100
     cgtgtttttt attttcctac gtggtgtccc aataccgact tttttaggtt aaccgtattt      2160
     ttgcaccttg aaaaaatcga aaaattgtcg attttggggt aaatttggca acaatggata      2220
     aaaactatat acgaaatgat agctcttttt atgttctatc gactcaaaca aaccgcacct      2280
     tcgtatcttc aattgctcaa aagttatggg gtttaacatg tttcaacttt aaaaaatggc      2340
     aacgtcgcac tcggggggct ggggactaaa ccaaccccgg atttggagac cggaagtgcc      2400
     cctctatcac tggtatgaat ttcgttaact tttgaaacgg gcaaatttgg ggggtccgtg      2460
     catagagtcc                                                             2470
//
ID   ISL2EU-9_BTa repbase;    DNA;    INV; 5561 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   03-JUL-2018 (Rel. 23.07, Last updated, Version 2)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Spy; ISL2EU-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5561
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 667-667 (2018).
XX
DR   [1] (Consensus)
XX
CC   A single copy.  TSDs are 0-bp long. Target are AAATTT, TE
CC   inserted between AAA and TTT.
XX
FH   Key           Location/Qualifiers
FT   CDS           1693..3849
FT                 /product="ISL2EU-9_BTa_1p"
FT                 /translation="MENKYESVCALPGRKMDLLADSCCGNKSEVPSENCSK
FT                 CGVSLEKKAKREKHWFKGLLFCTACYKESSRHRLPDRVEVYDSPDESSDGG
FT                 IDGDSDRDSANESVLLTEKITLKIKATICSHSYCIFGCKRSSRKLIKISKS
FT                 LRTLALVKYRLIIKETSRCCTHHVKNDDFNVDCINKLLQTDLKDAVLSADE
FT                 LVAIIDQLRTHSAASFADQANKSECFLDLVDDFSNWTGLTKVQFQDLLKFV
FT                 QVNEQDDAKNRVVLGAYLMHMHTALAENKIAALLSISQSTVSRYISLARDH
FT                 LLQSFVPIYLNRAVNREKVFQESTKIARTIHGISDSDSKIMTVWDGTYLYL
FT                 NKSVNFAFQRATFGGQKKTNYVKPMLAVTTNGLIIDVFGPDELWAGSVGDG
FT                 DILQHIMSTPLFKNFFIKGDVFVLDRGFERRREDLENLGFEVSIPTCSKGK
FT                 AQLTAYEANQSRLCTKLRWVIESVNSSLKRFKYFKTRIPALGVPHLYDDVK
FT                 IAAAVHNAFFKRLSSDGDDPQVAVKMLQHLNTPNIIQGVVEKGNLIRRTSQ
FT                 FQIMNSSHFEQITAWSPEIVKSFAEPYQLKWAKNYISDHFNKAGDNQFYIS
FT                 KDDLMPDFSALNLTLQSPIFVKAKQVSRHKSNKVYNIFILIDAATSSSKAV
FT                 VGRYCTCLNGARTVCPCSHVVAIVWYLFFGRHLEDLESPAAFLQDCFPMMK
FT                 RRDNQDDASEGDVTSEQDE"
XX
SQ   Sequence 5561 BP; 1588 A; 1154 C; 1221 G; 1598 T; 0 other;
     ggaccctatg cacggacccc ccagatgtgc ccgtttcaaa agttaacgaa attcatacca        60
     gtgatagagg ggcacttccg gtctccaaat ccggggttgg tttagtcccc agccccccga       120
     gtgcgacgtt gccatttttg aaagttgaaa catgttaaac cccataactt ttgagcaatt       180
     aaagatacaa ggatgcggtt tgtttcagtt gatagaacat aaaaagagct atcatttcgt       240
     atatagtttt tatccattgt tgccaaattt acccaaaaat cggcaatttt tcgatttttt       300
     caaggtgcaa aaatacggtt aacctaagag agtcggtatt gggacaccac gtaggaaaat       360
     aaaaaacacg cgaaattaaa gcccttaatg tgagctttcc aacggtatat cggtttttcc       420
     ggggaaacga ttctatcgcg agatacaggc cttcaaagtt cgacttgccg tacttttgga       480
     ggtcccccgt cattcgcacc tcaaaaaatc agtactgcgc acgcacatag gaaaatgaga       540
     atgacatgta atgaaagccc tttgtatggg ctctccaacg gtatatcggt ttttccgggg       600
     aaacgattct atcgcgagat acaggccttc aaagttcgac ttggcgtact tttggaggtc       660
     ccccgtcatt cgcacctcaa aaaatcagta ctgcgcacgc acataggaaa atgagaatga       720
     catgtaatga aagctctttg tatgggcttt ccaacggcat atcggttttt tcgaggaaac       780
     gattctatcg cgagatacag gccttcaaag ttcgacttgg cgtacttttg gaggtccccc       840
     gtcattcgca cctcaaaaaa tcagtactgc gcacgcacat aggaaaatga aaatgacatg       900
     taatgaaagc cctttgtatg ggcttttcaa cggtatatag gtcttttcga agaaacgatt       960
     ctatcgcgag atacaggcct tcaaagttcg acttggcgta cttttggagg tcccccgtca      1020
     ttcgcacctc aaaaaatcag tactgcgaac gctggcagga aaatgaaaat gacatgtaat      1080
     gaaagccctt tgtatgggct ttccaacggt atattggttt ttctggggaa acaatgttgt      1140
     cgcgagatac aggccttcaa tgttcactgc agggggtttt ttaggtaccc tgcgcggctt      1200
     gtttcttcac ccatcgtgat agtgcacgtc ccaggtcata ttaaataata gatgaaacag      1260
     ggcactaaat agacaatttt tcgatctcgt ttatcaattc cctgcctcgg aaaaatcgat      1320
     ggtgtcaaac actcaacgtg aatgaaaaca ctcagaacgc ataaagggta catgaaaaaa      1380
     gtcgcaatct tagtgattgt gttatagggg agacatgata cataaaaaaa aaatggatcc      1440
     attgtctctg agattccatt gaagttgtat gtttaatatt cgtttaaaat ttggtatgta      1500
     cagttggcag tatgtatcag gttcgtctct gtatctgcat ctgcatctct ctctgcatat      1560
     ctggatctgt ctctccctgc tcgccgctgc atggacggca gcccactttg ataagaactc      1620
     cgattttatc gttatcattt tatcttcgat tctgagatcc gtccatgcag tgtttttcct      1680
     acctgctaac ttatggaaaa caaatatgaa tcagtttgtg cactaccggg tcgcaagatg      1740
     gatcttctcg cggattcttg ttgtggtaat aagtcggaag tgccgtcgga aaattgttcg      1800
     aagtgcggag tctcgttgga aaaaaaggcc aaacgcgaaa agcattggtt caaaggttta      1860
     cttttctgta cggcgtgcta caaggaaagc agtagacatc gtttaccgga tcgtgttgag      1920
     gtttatgatt ctcccgatga atctagtgac ggcggtattg atggcgacag tgatcgtgat      1980
     agtgcaaatg aaagtgttct actgacagaa aaaattactc tgaaaatcaa agcaacaata      2040
     tgtagccatt catactgcat attcggttgc aaaagatcta gcagaaaact cattaaaatc      2100
     agtaagagct tgagaactct ggctctcgtc aaatatagac taatcatcaa ggaaacaagt      2160
     aggtgttgca cacatcatgt aaaaaatgac gatttcaatg ttgactgtat taacaaacta      2220
     ttacagactg atttaaaaga tgcagttttg tctgcagatg aacttgtagc aattatagac      2280
     caattaagaa ctcattctgc agcatctttt gctgatcaag ccaacaaaag tgagtgtttt      2340
     ttggaccttg tagatgattt ttctaattgg acaggtctta ctaaagtgca atttcaggat      2400
     ttattaaaat tcgttcaagt taatgagcag gatgatgcaa aaaaccgcgt tgtgttgggc      2460
     gcttatctaa tgcacatgca tacagcttta gccgagaata aaatagcagc tttgctatcg      2520
     atttcacaaa gcactgtgtc gcgttacata tctctagctc gagatcattt gctccagagt      2580
     ttcgttccaa tttatttgaa tagggccgtg aatcgtgaga aagtgttcca ggaatccaca      2640
     aaaatcgcgc gcactatcca cgggatctcg gacagtgact caaaaatcat gactgtgtgg      2700
     gatggaacct acctttattt gaataaaagc gtcaattttg catttcaacg cgctactttt      2760
     ggtggtcaaa aaaaaactaa ttacgtgaag cccatgctag ccgtgacaac gaacggtttg      2820
     attatcgatg tttttggccc tgatgaatta tgggctggca gtgtagggga cggggatatt      2880
     ttgcagcata ttatgagtac tccattgttt aaaaattttt ttataaaagg agatgtgttc      2940
     gtgttagatc gggggttcga aaggaggagg gaagatttag agaacctggg gtttgaagtt      3000
     tcgataccca catgcagtaa aggtaaagca caactgacgg catacgaggc aaatcagagc      3060
     cgattgtgta cgaagttgag gtgggtcata gaaagcgtga acagttccct taaacgattt      3120
     aaatacttta agactcgaat cccggcgttg ggagtgcctc atctttatga tgacgtcaaa      3180
     attgctgccg cggtccacaa tgcatttttc aaacgtctca gtagtgatgg tgacgatccg      3240
     caggttgctg tcaaaatgct ccaacatctg aacacaccca acattatcca aggggttgtg      3300
     gagaaaggaa acttaattcg gcgaaccagc cagtttcaga tcatgaattc tagtcatttc      3360
     gagcagatca cagcgtggag ccccgaaatt gtgaaatctt ttgccgagcc gtatcagctt      3420
     aaatgggcaa aaaattacat ttcagaccac tttaataaag ctggcgataa ccagttttat      3480
     attagcaaag acgacttaat gccagacttc agtgcgctca acttaaccct ccagagccct      3540
     atatttgtga aagcaaaaca agtgtcgcgg cataagtcaa ataaagtgta caacattttc      3600
     atcttgatcg acgcagccac ttcttcgtca aaagctgttg ttggcaggta ctgcacatgt      3660
     ctcaatgggg ctaggacagt gtgtccttgc tcgcatgtcg tggctattgt gtggtacctt      3720
     ttctttggtc ggcatttgga agacctcgag tcaccggctg catttctgca agattgtttt      3780
     ccaatgatga aaagacggga caatcaagac gacgcatcgg agggcgatgt cacttctgaa      3840
     caggatgagt aacgtaagtc cgtcttcttt tttcttttta ggtatttcta cattttttat      3900
     ccaaaaatgt ggtttgacac tgcggatatt ctcattatta attttttcac ccaaattaag      3960
     caatctataa atgaggttgg taactgtcta tatttagtgc cctgtttcat gtaatgttta      4020
     attggacctg aaccgctaca atgaacattg aaggcctgtg tctcgcgaca aaatcgtttc      4080
     cccggaaaaa ccgatatacc gttggaaagc ctatacaaag ggctttcatt acatgtcatt      4140
     ctcattttcc tatgtgcgtg cgcagtactg attttttgag gtgcgaatga cgagggacct      4200
     ccaaaagtac gccaagtcga actttgaagg cctgtatctc gcgatagaat cgtttccccg      4260
     gaaaatccga tataccgttg gaaagcctat acaaagggct ttcattacat gtcattctca      4320
     ttttcctatg tgcgtgcgca gtactgcttt tttgaggtgc gaatgacggg ggacctccaa      4380
     aagtacgcca agtcggactt tgaaggcctg tatctcgcga tagaatcgtt tccccagaaa      4440
     aaccaatata ccgttggaaa gtccatacaa agggctttca tttcatgtca ttttcatttt      4500
     cctgccagcg ttcgcagtac tgattttttg aggtgcgaat gacgcgggac ctccaaaagt      4560
     acgccaagtc gaactttgaa ggcctgtatc tcgcgataga atcgtttcct cggaaaaacc      4620
     gatataccgt tgaaaagccc atacaaaggg ctttcattac gtgtcattct cattttcctg      4680
     ccagcgttcg caatactaat tttttgaggt gcgaatgacg cgggacctcc aaaaagtacg      4740
     ccaagtcgga ctttgaaggc ctgtatctcg cgatagaatc gtttccccgg aaaaaccgat      4800
     ataccgttgg aaagcccata caaagggctt tcattacatg tcattttcat tttcctgcca      4860
     gcgttcgcag tactgatttt ttgaggtgcg aatgacgcgg gacctccaaa agtacgccaa      4920
     gtcggactgt gaaggcctgt atctcgcgat agaatcgttt cctcggaaaa accgatatac      4980
     cgttgaaaag cccatacaaa gggctttcat tacgtgtcat tctcattttc ctatatgcgt      5040
     tcgcaatact aatcttttga ggtgcgaatg acgcgggacc tccaaaaagt acgccaagtc      5100
     ggactttgaa ggcctgtatc tcgcgataga atcgtttccc cggaaaaatc gatataccgt      5160
     tggaaagctc acattaaggg ctttaattac gcgtgttttt tattttccta cgtggtgtcc      5220
     caataccgac tcttttaggt taaccgtatt tttgcacctt gaaaaaatcg aaaaattgcc      5280
     gatttttgaa taaatttggc aaaaatggat aaaaactata tacgaaatga tagctctttt      5340
     tatgttctat caactgaaac aaaccgcacc tatgtatctt taattgctca aaagttatgg      5400
     ggtttaacat gtttcaactt tcaaaaatgg caacgtcgca ctcggggggc tggggactaa      5460
     accaaccccg gatttggaga ccggaagtgc ccctctatca ctggtatgaa tttcgttaac      5520
     ttttgaaacg ggcacatttg gggggtccgt gcatagagtc c                          5561
//
ID   ISL2EU-N1_BTa repbase;    DNA;    INV; 1400 BP.
XX
AC   .
XX
DT   30-MAY-2018 (Rel. 23.06, Created)
DT   30-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N1_BTa; Spy.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1400
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 642-642 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consenssu. TSDs are 0-bp long. Target are
CC   AAATTT.
XX
SQ   Sequence 1400 BP; 429 A; 285 C; 268 G; 418 T; 0 other;
     ggaggggtat cgataagggc cttttttggc cccctcctag aatctggaaa tttatgcggg        60
     ttttccaagt tgactcaatg tagtttacgg aaataatcat gatttagccc ataggccact       120
     ggatacgtgt taaacggttg cctaaacata ggtctgcagg cgtattttag cgaaaattcg       180
     tgtttttcta tcactccgag gcttttttga caccgagcgc atcgtctaac taaaacgagc       240
     ttttgatatg ttatcaagga ggctttagga cacattttaa ccctggtttg gttttagtta       300
     gatgatgcgc tcatagttaa aaaaaaactt ttttcaaaaa tcgacgttta agggacatcc       360
     gcaaaaatct tagggaaaca cgtctctcga actgtatgca cgctacgtat attatcgagg       420
     gcagttatca agccttgtta aacccttaca aggagattta cttcaattgt ggccaaaaaa       480
     aaaaacctaa cgacgtaatt ccctaagatt tttgcggatg tcccttaaac gtcgattttt       540
     gaaaaagttt ttttttacta tgagcgcatc atctaactaa aaccaaacca gggttaaaat       600
     gtgtcctaaa gcctccttga taacatatca aaagctcgtt ttagttagac gatgcgctcg       660
     gtgtcaaaaa agcctcggag tgatagaaaa acacgaattt tcgctaaaat acgcctgcag       720
     acctatgttt aggcaaccgt ttaacacgta tccagtggcc tatgggctaa atcatgatta       780
     tttccgtaaa ctacattgag tcaactcgga aaacccgcat aaatttccag atttaagttg       840
     atgttatgct tttagtgaaa atatgcctcc actactccaa aatccgttat cttcacagct       900
     gtttgtatgg aaaattcaat tttttttgga cacaattgaa ggaaatctcc ttgtaagagt       960
     ctaacaaggc ttgataactg ccctcgataa tatacgtagc gtgcatacag ttcgagagac      1020
     gtgtttccct aagatttttg cggatgtccc ttaaacgtcg atttttgtaa aaagtttttt      1080
     ttaactatga gcgcatcatc taactaaaac caaaccaggg ttaaaatgtg tcctaaagcc      1140
     tccttgataa catatcaaaa gctcgtttta gttagacgat gcgctcggtg tcaaaaaagc      1200
     ctcggagtga tagaaaaaca cgaattttcg ctaaaatacg cctgcagacc tatgtttagg      1260
     caaccgttta acacgtatcc agtggcctat gggctaaatc atgattattt ccgtaaacta      1320
     cattgagtca acttggaaaa cccgcataaa tttccagatt ctaggagggg gccaaaaaag      1380
     gcccttatcg atacccctcc                                                  1400
//
ID   ISL2EU-N1_HSal repbase;    DNA;    INV; 1427 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   ISL2EU DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1427
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 838-838 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1427 BP; 456 A; 247 C; 248 G; 474 T; 2 other;
     aaaggatggg tgtcaataag gccgtttttt gggccctctt cgattggctt gatactgtga        60
     gaaattatta ctgttgacgt atctcacaac cccctgaaac ccgtttttcg atcggtcaat       120
     tagaatcgaa gatagagcag tttgaagatt ctcgatttgc tacactttaa ttcagaactc       180
     gtcatatttc tctaagttat taatcaattt cggccatcaa actttttcaa aaactatgca       240
     tacgtatgat gttgaatata tgtaaaagtc gttgacctag ccccttagac tgaccttgaa       300
     aatgtcctcg tttgaataag accagtaaca tggttttcgc gtactttttt tatgtttctg       360
     ggaatcaaaa gtagcttttc tattccgaaa tctttatagg cgtggtatgt aatatacaaa       420
     aaagcatttc tgcatcatca attcatacgc tatggacatg atatctcaag atgtgatttt       480
     cacaaaagat aaatggaatt aacacttcag aatgatagag cagtagcaac aggatacaaa       540
     tcagttttat taatcgtagc atattctttt tctgatgttt ataactctga ctaaataact       600
     gtcgatctca gtcatttatc attgtaaagg atgtggtaag tacgtaaaaa gtgcttttga       660
     acttcttgtt tggtcgatcc attcttaatg tagattttgt gagaaaagaa aacataatag       720
     tatgaaacgc gtacgagatt gccacttttc ttacaaacca tacatttctt ctcagatata       780
     atacatcttt ttatattacc acacttttgc agaagttgac ggaatatctt gcaagtgaag       840
     attctgacat tgtaagtact tcattagcct cgttagtgtg cttttcgaaa aaaatcagtt       900
     gctctgtcta ccattctgaa gtgttaattc catttatctt ttgtgaaaat cacattttga       960
     agatatcatg tccatagcaa tgtatgaatt gatgatgcag aaatgctttt ttgtatatta      1020
     aataccacgc ctataaagat tkcggaatag aaaagctact tttgattccc agaaacataa      1080
     aaaagtacgc gaaaaccatg ttactggtct tattcaaacg aggacatttt caaggtcagt      1140
     ctaatgggct aggtcaacga cttttacata tattcaacat catacgtatg catagttttt      1200
     gaaaaagttt gatggccgaa attgattaat awcttagaga aatatgacga gttctgaatt      1260
     aaagtgtagc aaatcgagaa tcttcaaact gctctatctt cgattctaat tgaccgatcg      1320
     aaaaacgggt ttcagagggt tgtgagatac gtcaacagta ataatttctc acagtatcaa      1380
     gccaatcgaa gagggcccaa aaacggcctt attgacaccc atccttt                    1427
//
ID   ISL2EU-N1_LMi repbase;    DNA;    INV; 1647 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1647
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2988-2988 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1647 BP; 475 A; 323 C; 330 G; 519 T; 0 other;
     aagcctcgtt tacactgggg caacatcttg caacattgtg gcatgctacg taaatgtggc        60
     gtgcgtcgcc ttgtagcatg ctacaaaagg caacatcttg cagcgtatgt tgcatgcggc       120
     agtttaattt ataccaaagc aacagaattc gtgccacatg gagtcggtct tgtaggagag       180
     tgggtgctcc agtgactgca gcggcggctt acttggtcat tgcacatgca ggtgcagcca       240
     acaatggaaa cgaaaatcaa cggaaaggga aacgatggtg gaagaggaaa atatttaaag       300
     aaggcccacg gaatagtata ctaggagatc taacagcaga tgatggtgcc ttatttagta       360
     actttacgag aatgtcgaat gaggactttg attatttact gcagttaatt gcacctctta       420
     ttaaaaaaaa aaattccaag atagtatttc tccaagaatt cgactggcta tcacattaag       480
     atttctagcc acaggtgatt cgtacagtca cttatgtact tattcaaagt atcatattca       540
     gctatttccc tcatagtgcc agaagtgtgt gaagctcttt catcagtgtt gaagaattac       600
     ataaaggtaa gtaagcaaca tgcaatactg gctttttata taatttttaa tttcacatga       660
     ataaaagtct acactataaa tagtcgtcac aaaacattcc ttttaactcg gaaaaaattg       720
     ttctttcact ttcaaatatt tagaattctg gcaagaaaga taccaatagt gtcgtaccat       780
     gtactacaat gtatattatt ttatgtaaat aaatagaatt ctatgaatga actcagactt       840
     tttggtgact ttgttcctac aaacgtattt tatcgtatgc tgtagtagaa tgagttttga       900
     aactactgtt actcaatttt atatttattc ggatcggttt gttagaagat gctgtttgta       960
     gcctattact acaacaatat aacaaattcg gagtctgtat gaacagagga aaattgccta      1020
     atgtacaaat atacttattc ataattttat ggccattgat tagtatacta cagtactcag      1080
     ttataaaata tgtatggtta ttgaaatatc gaggcactta caattgagct gtccattccg      1140
     gcacgtggtt ccgtcatgtc gagaatgaat tttaatgatt catatgcgaa ccatttccgt      1200
     tccgtatcag gtgctgagcg gcttttctta ttcatcatac gtgtgtgctc gcgatgaaat      1260
     gcacttctca gattttttat cttcttcttt acagtgacct cgtcaatttc atatattgaa      1320
     ccgagtttcc gtatcacgtc tctttttagt ctgttatttt tataattgct gtcacgcaca      1380
     ttccacagca cttctgattg tctgtagtcc tcaatgaacg ccaaatactt ctcgttggac      1440
     cactccatgt tttcgaacta cgcgctgccg cacagatact gtcgcacacg aacccactca      1500
     gctcgggagc tatctgcggc agcttgcggc atgacgaatg ttgtcgcctg tgtcgcgtga      1560
     ctcatgcgac gacgtgcggc actgtagcgt gcggcactgt cgcatgccac aatgttgcaa      1620
     gatgttgccc cagtgtaaac gaggctt                                          1647
//
ID   ISL2EU-N1_RPr repbase;    DNA;    INV; 2335 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   ISL2EU DNA transposon: consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2335
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3243-3243 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 2335 BP; 795 A; 378 C; 394 G; 768 T; 0 other;
     aaagggagta gcggaataag aggggtctgg cggcccccac cggttttgaa acaatcgacc        60
     caaaaacttt ggaggagacc gaaaaaaaat tttttgaaat tttttccgac cctctccaac       120
     cccacaaaaa cccgtaaacg agaaaaatgt gtttttttga tattttaatt tttttcgagc       180
     gttctaatcc ttttaaagcg gttccaacgc aactaaaaat ttattttgga tgtgtagatg       240
     ttccctgaat tttttcggtt tttactgtac agttaaatga agtgaaacat agctttgaat       300
     ccaaaaaaat cgttaaaaat cgggattttt taaaaacaag tcttcggcat tttgggctga       360
     ctcgatggaa aatgacggcc taactatggt tgaaagatac actcttactc tacaaaatgg       420
     cgcaattgaa actcaatttg gttgcttgtt gtctgcgata actcaatttg agtaaaacgc       480
     gaatttaaaa ggtatgcgat tttggcctat aaaataagtc acaatttaat taaacaaaaa       540
     aagcaccaaa aataatgttc gtataaaggt attctaaatc gctgatcaag aatttgatgt       600
     caaaaccatg tttcgacaat tgacagctgt taaaaatgct gtcaacaaaa aacgaagaat       660
     tcattttttt tcaatttttt ttaaatgcac ggataattgt ttttattttc aattcattga       720
     ggtaattata atcttgaatt taatgataaa agtatatgta aaagtattaa agtaattgtt       780
     attttatgag tagtcaaacg tttgtgataa aggtaataat tatctggctt tatcgcaaat       840
     aatatagttt tcttcaatta cattctcaat ctaggtattt atcccacaat gttgtatata       900
     tgtaatataa agtaaataag atatgcatat ttttaggaca gctaattatt ccaatatttt       960
     actataagta aaattagggg gactaaatta aattacaatt gagaaatcaa taattgttgt      1020
     tgaataatct acttgtggct tgttgatggt agattcggat ccgaggaatt ggatttgaaa      1080
     acttccaaat gatgaaaggt gcataaaatg cgacctactg ttgcgatacg gcaccgggca      1140
     aaaaaaagtc attacttcag aagaagaagc caacttgttt tcggttgaac tggacaaaga      1200
     agtggatgta ggaaacgttc tgtgcggaaa atgtcgtcgt tcaactcgtc tagtcagtgc      1260
     ggatccgaat ctaccatcaa caagccacag tcatcacgaa acttttccgc aagatcgtga      1320
     tcgtgtggaa cgacaattat cagaactctc aaacttgtca gcatcaggat cttcaaacca      1380
     ttgacatcag acgatgtatc agactttccc gaaatgacag aaaaagattt gaagatcctt      1440
     tttacaggtt catcattcat tcatcatttg gaagttttcg tttttttggt ggcatctctg      1500
     ttttagctaa aaaaaatttc aaaaaattaa catcttcgac aaaatcaaac taaaaaaatg      1560
     tgatatgacg ttttatcaac atatactttt atcatcaaat tcaagattat aattacctca      1620
     atgaattgaa aataaaaaca attatccgtg catttaaaaa aaattgaaaa aaaatgaatt      1680
     cttcgttttt tgttgacagc atttttaaca gctgtcaatt gtcaaaacat ggttttgaca      1740
     tcaaattctt gatcagcgat ttagaatacc tttatacgaa cattattttt ggtgcttttt      1800
     ttgtttaatt aaattgtgac ttattttata ggccaaaatc gcataccttt taaattcgcg      1860
     ttttactcaa attgagttat cgcagacaac aagcaaccaa attgagtttc aattgcgcca      1920
     ttttgtagag taagagtgta tctttcaacc atagttaggc cgtcattttc catcgagtca      1980
     gcccaaaatg ccgaagactt gtttttaaaa aatcccgatt tttaacgatt tttttggatt      2040
     caaagctatg tttcacttca tttaactgta cagtaaaaac cgaaaaaatt cagggaacat      2100
     ctacacatcc aaaataaatt tttagttgcg ttggaaccgc tttaaaagga ttagaacgct      2160
     cgaaaaaaat taaaatatca aaaaaacaca tttttctcgt ttacgggttt ttgtggggtt      2220
     ggagagggtc ggaaaaaatt tcaaaaaatt ttttttcggt ctcctccaag gtttttgggt      2280
     cgattgtttc aaaaccggtg ggggccgcca gacccctctt attccgctac ccctt           2335
//
ID   ISL2EU-N2_BTa repbase;    DNA;    INV; 1326 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous; Spy;
KW   ISL2EU-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1326
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 669-669 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are likely 0-bp long, thus
CC   elements insert specifically into AAATTT target sites.
XX
SQ   Sequence 1326 BP; 397 A; 266 C; 269 G; 394 T; 0 other;
     gagcttgatg caaaaacggc ttttttcgcc ccccctctgg aagttcttca gactttgtct        60
     attgattact catacttgag cgcttctttt cccaaatttt cagaccccca aaaaattttg       120
     ggggggagct agggggggtg gaagtcaaaa cctgtgaacc tcgatatctc ttgaacaaag       180
     aaagatatcg aggtccggtt tggacgaaaa atcgtctaaa attgcatact ttaagattct       240
     aaaggtcgaa atcccgatat cacattttta agtcaacata tgtgcttttt tccagttttt       300
     aggtctagaa aatttctttt aaacgaaaaa tttacaaaga tctcaatttt ttatttgaac       360
     caaaaccagt tttttaaatt gttcgtcttt ttccgcatcc aacgagtggt ccattaagct       420
     ggggaaccaa acggttccgg agttatgatc gattgaagtt tccgctcaac gcgcgccgac       480
     cgattttcgc gcgcaaaaaa gtcggatttg actgttatta gatcagattg aatgttcaaa       540
     ctgagcaaaa tgctttatta gggactcttg agggtcgctg agttcagaaa ttaccgatac       600
     ttccaaaaaa ttcacgtttt taaaattgca gcttcggaca ggaccactga gcggccggtc       660
     ggcgctcagt gggcctctaa aatagcgctg cggagctgta attttaaaaa cgtaaattat       720
     ttggaagtat ctgtaatttc tgaactcagc gaccctcaag agtccctaat aaagcatttt       780
     gctcagtttg aacattcaat ctgatctaat aacagtcaaa tccgactttt ttgcgcgcga       840
     aaatcggtcg gcgcgcgttg agcggaaact tcaatcgatc ataactccgg aaccgtttgg       900
     ttccccagct taatggacca ctcgttggat gcggaaaaag acgaacaatt taaaaaactg       960
     gttttggttc aaataaaaaa ttgagatctt tgtaaatttt tcgtttaaaa gaaattttct      1020
     agacctaaaa actggaaaaa agcacatatg ttgacttaaa aatgtgatat cgggatttcg      1080
     acctttagaa tcttaaagta tgcaatttta gacgattttt cgtccaaacc ggacctcgat      1140
     atctttcttt gttcaagaga tatcgaggtt cacaggtttt gacttccacc ccccctagct      1200
     cccccccaaa attttttggg ggtctgaaaa tttgggaaaa gaagcgctca agtatgagta      1260
     atcaatagac aaagtctgaa gaacttccag agggggggcg aaaaaagccg tttttgcatc      1320
     aagctc                                                                 1326
//
ID   ISL2EU-N2_LMi repbase;    DNA;    INV; 753 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-753
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2989-2989 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 753 BP; 178 A; 215 C; 204 G; 155 T; 1 other;
     aaggcgggtc cacactgagc gcgccgcgcc gctgcagccc gcgcactgct gtagcacagt        60
     agaatgcgcc gtccgcgccg cgccgttccg aggcgcgcac tgtggttcca gttggagcgc       120
     gcgcacgtct gaagatggag cgagccgaga ttgtgagtgc cgcatttatt gtgctgtacc       180
     atcagttaag gaagaagcgt cgtcattggg taaccccagt gttaaagagt agggcattgt       240
     acggtggaaa tgatcttttc agtgaactac ttgcaggcga cagtggacag ttcgaaaact       300
     tttatcgaat gtctttcgaa gacttcgaat atctgttgaa agtgatcgaa ccagacataa       360
     tgaagaaaga cacaaattgt agacgtgcta tatctaccaa agagagactg gcaataactt       420
     tgcgctttct ggcaactgga gattccttta caagtctgat gtatctgctc tatgaggttc       480
     tcactttgct tccggtccca ctccataacg aggacaccta cgcgagaaca cacgacctgt       540
     caccgcgaat tgacgcacgc aataaactag cgcgcccgcc agccgaagcc ccgtctaaac       600
     tgagcgcgcg caaacgcgcc actccctttg atgtaccgac aacagccgga acactgcgcg       660
     gcgcggcgcg gttcgccgtc cacactggac gcgcacaccc gcgcacascg ttttgcgcag       720
     cgcggcacgg cgcgctcagt gtggacccgc ctt                                    753
//
ID   ISL2EU-N3_BTa repbase;    DNA;    INV; 2096 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous; Spy;
KW   ISL2EU-N3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2096
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 670-670 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 0-bp long. Target is
CC   AAATTT specific. TE insert between AAA and TTT.
XX
SQ   Sequence 2096 BP; 806 A; 324 C; 299 G; 667 T; 0 other;
     gagcctccca aaaaaagggc cttttttggc cccttttctg aaactcgggg atttcattca        60
     aatgtggcct aaacgaaacc ttatgatgac ctaagactcc agtaaaaatt ttagcttgag       120
     tatacgtctg gtttcggaga tacagcgttg caaagtttgc atatttaagc tttaaaaatc       180
     ttcatagttt caaatattat cttcctaaaa ccaacatcag agtgaacttt acaatctaaa       240
     acaaagcgta aatgaagcat aatgataaaa aaagcctcca tcaaaagttt tagctcatgc       300
     atgacccctg ttttggtagt gcaacgttgc aagtttacct ttctgagctt taaaaatgct       360
     catattttta agtttcttgt ttaaaaacca attttagtga atatcaaact gcgttttgag       420
     ggataaaatt aacccctagt gatacttttg gatgcatagt tgcattgata aaaggctaca       480
     atgatttcaa gtaacacagc gttgcacagt ttacatccta aatctctgaa aatgtctttt       540
     ctcttgtttt cttatgagag acaactccga tcaaacatgt ttcgatattg taaagtgaaa       600
     tacaaggaat cttgttagtt ctaagtgaca gttggtgtaa aaaatgacac tgttgcctat       660
     ttatcttttt tttatctcaa catttaatca taaaataaca ttaaaattag gatacttcca       720
     ataattatct aatttcaaaa tcaaattcaa gagactttgc catgctcgat gaaatgctcg       780
     cagcaccagc attgctttca aaatccaaca aattatgcct cgccatagtt gccaatttaa       840
     ccgtttttta agtaaaatga aaaaaataaa catagaatac agaatttgcc gagttttttt       900
     aagtataaat aaatattgat ctagagaata catttattat gccttgcaaa atagagtacc       960
     tccactgttt ttttaaaaaa aaatgaaaaa atgaaaaata ttgaaaaaac ttgaaaaaat      1020
     taaaaatatt gtaaaaaatt gaaaaaataa aaaaaaatca aataaaaatt aaaaatattg      1080
     taaaaaattg aaaaaataaa aaaaatcaaa taaaaattaa aaatattgaa aaaaattgaa      1140
     aaaattaata aaatcaaata aaaattagaa acagtaaaat aatattaaaa aaacaaaatt      1200
     aagtatcaat tattggaggc atctttattt taaaataatt ttattattaa ttgtttgaaa      1260
     ataagtatta ataaacttag caatagtatt tttgcgaata ccaatcgtca cttggaactg      1320
     acatcagccc tcgacatttt tccttgatat aaggcctgac acccattgac gtcctcttta      1380
     actagcataa ataataattt cgagagttta aagttgttag cttggcaacg ctgtatcacc      1440
     accaattaaa gtatccctat ttaaatacaa acatagagct acaaatgaca catttggtag      1500
     atttcatgct tcaaattcta aagaagatcc acgaaagtag ctttttaaac gcgggactta      1560
     gaaatataaa catttttaaa gctcaaatgt ataaacttag caacgctgta tcattaaatc      1620
     tgtacttacg cttgcggtaa ggcctataca aaagacttat catattataa agttacatct      1680
     aaacaccata cacagatctt ttggtgatca ataagttcgt tttttcattc agaaacttac      1740
     aaaaatgagc aatttttata ggtctttggt gtcaactttg caacgttgta tcaagagaat      1800
     cagcagtatc accgtatcaa taggaatata gatttaaaga taagactgac tgtaggtaaa      1860
     atgtcacaaa ataacagatt atatctgatg gagttgtttt ttaaagtaag atatttgaaa      1920
     atatgcgaat ttttaaagct taaatatgca aactttgcaa cgctgtatct tggaaaccag      1980
     acgtatactc aagctaaaat ttttactgga ggcttgtctc atcataaggt ttcatttaag      2040
     ccgcatacga atgaaatccc cgagtttcaa aaaaggggcc actttttggg aggctc          2096
//
ID   ISL2EU-N3_LMi repbase;    DNA;    INV; 1548 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   ISL2EU; DNA transposon; Transposable Element; Nonautonomous;
KW   ISL2EU-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1548
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2990-2990 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1548 BP; 447 A; 326 C; 339 G; 433 T; 3 other;
     aagccccgtt tacaccgaag cgaacactgg cgtacacagc cgaacgcgca ttcgctagca        60
     atgcgcggcg cgcgcgtgtt gagctgtagc tgcaaacagc gtttacactg gagcaaacag       120
     aagcgaatgc gcgcgatgtg tgtttgttat tagcgctaaa tcgttggcgc gttatttcag       180
     tattcagtgc aacgtgatgg agaacagaaa cacacaactt ggtttatttt gtatagcaag       240
     cacactgttg gtcatgaaag gcaaacggcg tagagagaga aaaatttgga tgtctgaatt       300
     tttgcgcagg cgtgaaagaa gtggcggctc ggctattgta agtgatttgc agctgcaacc       360
     atcgcttggt ttattcgaaa acttcacccg tatgtcaatm gacgattttc gccttcttct       420
     agccgcaatt gaaccaaaaa ttaaaaagca ggacacaaat tatcgacgag ccatatcagc       480
     agaagagagg ctagcactaa cgttgcgatt cttagcaaca ggtgacagtt atgctagcct       540
     caaatatcta tttcgtgtgt ctaaagcatc tatttcccag ataatacctg aagtatgcag       600
     tgccatatgc gaaacactca aggattttat aaaggtaaat ggcaaggaaa tagaggcaat       660
     gaaaatgagt aatgtattat agaagtatac aaaagaccag tcttttaggc tatttcataa       720
     cttaagcttt tcaatgaaac acataattaa cagaggaaaa ccatttgcaa ttattgtttc       780
     taactgtact ataatagtag ctaaaccgtg asattatcac agatacattg agtgtgaacc       840
     aagtgaatga tagggtcttt tgtgtatttc tatcttgcat tagtgtactt tcttttggtt       900
     taatataatg gaatttattt taccgaagtg aactgtcaaa taaataaaat ttatgcacca       960
     tatctaaaca gtttctgttg acgtgttggg ggacggtgtg tgtattatct ccacaggcaa      1020
     aacttcttct gggggattaa aattgcccat cccagatgat gatcgctctt tcgctctctc      1080
     tcgtcggaaa gaggagagca gagagttcat tttcttctcm acttcttccg tcgggatatt      1140
     tataacgtcg gcaatttctt gccaggcatc attcttcctg ttcattattt tataccgggg      1200
     gtctctagga tcccacaaac atctgtgaga tctgtactct tctatcaata acagcacagt      1260
     ctcactaacc actccatttc tcgttcaaaa tatatacaaa gtttcgcgcg gaaaaacaat      1320
     acactgtggc aaagcgagtg tcctgtcgtc gacctagcgc cgaagcggag aggacgctaa      1380
     tttcctttga tcgttcgccc tgaaaccgac aaccatcgga tcacaagcga acactcgcga      1440
     atgcaacacg cgcacgagcg aacactgcgc gcaaagcgtt tacaccggag cgaattctcg      1500
     ttcgctgttg cgcgttcgct tgtgttcgct tcggtgtaaa cggggctt                   1548
//
ID   ITmD37D_Ele1 repbase;    DNA;    INV; 1305 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37D DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37D_Ele1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1305
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1305
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37D-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >99% identical to consensus. This consensus
CC   is ~100% identical to the original sequence in [1], but is
CC   complementary. TA TSDs. 26-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..1221
FT                 /product="ITmD37D_Ele1_1p"
FT                 /note="transposase."
FT                 /translation="MYIFCIGIGVSFSFIHTLPNVRGVDILLVVVRLLRAM
FT                 KEYRDFVIKRFLNGERPGDIFRLLKSHGVKRNFVYTTIRRYRETSSTNDRA
FT                 RSGRPRSARTPRVIKIVRERIRRKKNRSIRKTAADLNVSIGTAHTILIKDL
FT                 GFRPYKKRKVHGVSEATSKKRLDRAKRILSRHAGQEFVFSDEKLFVLQQPH
FT                 NVQNDRVWAPSRDSIPESNINIPRFQSAASVMVWGAVCKRGKLPLVFIEKN
FT                 VKINAAYYKTEVLEKVVAPSLRSLYGDEHYVFQQDGAPAHTANVVQAWCRD
FT                 NLTDFLDKTLWPPSSPDLNPLDFFVWSYMMAKLNEYKVSTLDHFKTVILKI
FT                 WDEMPMQSVRAACDAFEKRLKLVKEYKGGGHSKRNVVNVPCKHSFQ"
XX
SQ   Sequence 1305 BP; 341 A; 300 C; 333 G; 331 T; 0 other;
     cacggtgttc aataagttcg aatacaagtt ttcatcattg cgtaggtatg cgccatgtac        60
     atattctgca ttggtattgg tgtcagcttt agcttcattc atacgctacc gaatgtgcgc       120
     ggtgttgaca ttctgttagt tgttgttcgt ttgttacgcg cgatgaaaga gtatcgggac       180
     ttcgtaatta agcgtttttt gaacggtgag cgacccggcg atatattccg gctgctgaaa       240
     tcgcatgggg tcaagcggaa ctttgtctac acgaccatca ggcgataccg ggagacgtcc       300
     tcgaccaatg accgtgcgag atccggtcgg ccgcgttcag cgaggacgcc acgggtcatc       360
     aagatcgtga gggagcgaat tcggcgcaaa aagaaccgct caatccggaa aacggctgca       420
     gatctcaacg tttccattgg aaccgctcac accatactca tcaaggacct tggtttcagg       480
     ccttacaaaa aacgtaaggt ccatggcgtt tcggaggcta ccagcaaaaa gcggttggat       540
     cgagctaaga ggatcctctc tcggcacgct ggtcaggagt ttgttttttc ggacgagaaa       600
     ctgttcgtgc tgcagcagcc gcacaatgtg caaaatgacc gggtgtgggc gccatcgagg       660
     gacagcattc ctgaatccaa tataaacatc cctcggttcc aaagtgccgc gtcggtgatg       720
     gtttgggggg cagtatgcaa acgtggtaag ctacccttgg tgtttattga aaaaaacgtc       780
     aaaatcaacg cggcgtacta caaaactgag gttttggaaa aggttgttgc ccccagtctc       840
     cgaagcctct acggcgatga gcactacgtg ttccagcagg acggtgcacc agcccatacg       900
     gcaaatgtgg ttcaagcctg gtgtcgggac aatttaaccg actttctgga caaaactttg       960
     tggcctccca gctccccgga cttgaatcct ctcgactttt ttgtttggtc ctatatgatg      1020
     gcgaagctga acgaatacaa ggtcagcact ttggaccatt tcaagacggt aattctcaaa      1080
     atctgggacg aaatgcccat gcagtccgtg cgtgccgctt gcgacgcgtt cgagaaacgt      1140
     ttgaagctcg ttaaggagta caaagggggg ggtcattcca agagaaatgt tgtaaacgtt      1200
     ccttgtaaac atagctttca ataacataaa tccaaaaaat aaaaaaacat gttttcattt      1260
     ttttaacaaa ttttgaaagt gtatccgaac ttattgaaca ccgtg                      1305
//
ID   ITmD37D_Ele3 repbase;    DNA;    INV; 1304 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37D DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37D_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1304
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1304
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37D-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~97% identical to consensus. This consensus
CC   is ~98% identical to the original sequence in [1]. TA TSDs. 26-bp
CC   TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..1185
FT                 /product="ITmD37D_Ele3_1p"
FT                 /note="transposase."
FT                 /translation="MEAKRELVINLFLKQYRPCAILRKLKPFGINERFIFR
FT                 TIKRYKCTGSVKTAPRSGRKRTVRSPEAIKRVRERIRRNPGKSGRKMAKEL
FT                 GMSQSTLGNVLKHDLGLKAYKKQRVHGLTEKQKIARVERCRKLLKRHGDCE
FT                 ILFSDEKMFLLQDHHNQQNDRVYAQYLSDIPRDKLAVQRFQNVSRVMVWGC
FT                 FSKNMKVPLLFIEPGVKINSKYYIDNVLKNHLLPHVKKHYKNVPYCFQQDS
FT                 APSHQAKVTQAWCETNFPDFISSKEWPASSPDLNPLDFFAWGHMLSQLGNT
FT                 KGLNLETFKQRLVKIWDEMPQDIVRASCEAFQQRMRLVIKAKGERFELD"
XX
SQ   Sequence 1304 BP; 408 A; 246 C; 284 G; 365 T; 1 other;
     cagggtgatt actaagtcct gtcagtgttt tatttaggtt tgtagttttt ggtaggttaa        60
     ttacatacat gtctgtatat ttttcattta gagtgtattc aaatgtcaac acggcttgca       120
     actttgtttt gaaaattcat tcgtttaaga cgcgtaaaaa ttatggaagc aaaaagggaa       180
     cttgtgataa atctgtttct gaaacagtat cgaccgtgtg ctatcttaag gaagttgaaa       240
     ccattcggaa taaacgaaag attcatattc cgcactatca aacgatacaa gtgcaccggt       300
     tctgtgaaaa ccgctcccag atctggacgt aaacgcactg tcaggagtcc ggaagccatc       360
     aaacgtgtga gagagcgaat tcggcggaat cctggtaagt cgggtcgtaa aatggccaaa       420
     gaactgggaa tgtcgcaatc aacgctcggg aatgttttga aacatgatct cggattgaaa       480
     gcatacaaaa aacagcgagt gcacggtttg actgaaaagc agaagattgc tagagtcgaa       540
     agatgccgga agcttctcaa gcggcacggt gattgtgaaa ttttgttttc ggacgagaaa       600
     atgttcctgc tacaggatca tcacaaccag caaaatgatc gggtatacgc acagtacctt       660
     tctgatattc cacgcgacaa attggctgtt caacggtttc aaaatgtttc cagagttatg       720
     gtttggggat gcttctccaa aaatatgaag gttccattgc tattcattga gccaggtgtc       780
     aaaatcaaca gcaaatatta catcgataat gttttgaaga accatttgct tccccacgtt       840
     aagaaacact ataagaatgt accatactgc ttccaacaag actctgcgcc gtctcatcag       900
     gcaaaagtca cacaggcttg gtgtgagacg aatttcccag attttatttc gtcaaaagag       960
     tggcctgctt cgtcacctga tttaaatcct ctggacttct tcgcatgggg tcacatgctg      1020
     agtcaactag ggaatactaa aggactgaac cttgaaactt ttaagcaacg tttggtgaaa      1080
     atttgggatg aaatgcctca agatatcgtg cgtgccagct gcgaagcctt tcaacaacga      1140
     atgcggctgg taattaaagc aaaaggagaa agatttgaac tggattaggt taagttaaat      1200
     gtaacagata tactaaacct gaaatacact aaaagttgaa wtccatcaat gtttctagtt      1260
     tttatgacca tttactttac tgacaggaat tagtaatcac cctg                       1304
//
ID   ITmD37D_Ele6 repbase;    DNA;    INV; 1300 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37D DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37D_Ele6.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1300
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1300
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37D-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (27-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~98% identical to consensus. This consensus
CC   is ~99% identical to the original sequence in [1]. TA TSDs. 29-bp
CC   TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1173
FT                 /product="ITmD37D_Ele6_1p"
FT                 /note="transposase."
FT                 /translation="MTKWQRIRDLSHAQMSQKDISIAVGVSRWTVKRVLDR
FT                 EKKGQLSAKVATGRPRSARVPRIVAAIKRKIRANPVRSMRKMAKEHGISDF
FT                 SVRKIVKDDCGAKSRARKKTHMITNRIRELRVERCKKIMNYLKRKKTVILF
FT                 TDESMFTVDPVSNSRTDRYISSLPVKDVPDEHKNVFLTKHPASVMVFGLVA
FT                 SDGKKMDPVFIPEGDKVNTEVYIGILSKHVLPWIKEQYGPNPNVVFQQDGA
FT                 PCHTSNRTQKWLQEHLPFWAKDMWPPSSPDLNPLDYSIWRVMKAKACSKRH
FT                 PSTASLRQTLTRTWREMDPRYIIRTCRAFRKRVEAVIAANGNSIDD"
XX
SQ   Sequence 1300 BP; 387 A; 311 C; 312 G; 290 T; 0 other;
     ccgtatgcgt gaaaatgttt gcaccatcgc acaaataagg cgctcgttgc acctgtgcat        60
     acaatgcctt ggttttcttt gcatgcacgt aagctataac tcataccaca gtaggctgcg       120
     agtaaaagaa accgatttct ctagtttgac agttccacca tgacgaagtg gcagcggatt       180
     cgtgatttat cccacgcgca aatgtcgcaa aaagacattt caatcgccgt gggagtgtcc       240
     cggtggaccg tgaagagggt tttagaccga gaaaagaaag gacaactatc cgcaaaggtg       300
     gccacaggtc gtccgaggtc agctcgggtc cctaggattg tcgctgccat caaacggaag       360
     attcgggcaa atccagtgcg ttcaatgcgg aaaatggcga aggaacacgg tatcagtgat       420
     ttttcggtac ggaagatcgt gaaggacgat tgcggggcga agtcgagagc acgaaaaaaa       480
     actcacatga ttaccaaccg catccgggag ctacgagtcg agcgatgtaa gaagatcatg       540
     aactacctca agcgaaaaaa aacggtaatc ctgttcaccg acgagagcat gtttaccgtc       600
     gatcccgtat caaattccag aaccgaccgc tatattagtt ctctcccggt aaaagacgtg       660
     cccgacgaac ataaaaacgt gtttctgacc aagcatcctg ccagcgttat ggtatttgga       720
     ttggtggctt ctgatggcaa aaaaatggac ccggtgttca ttccagaagg cgacaaggtg       780
     aacacggagg tttacatcgg gattttaagt aagcatgtcc ttccgtggat caaagaacaa       840
     tacggcccga atccaaatgt tgtgtttcaa caagatgggg ctccgtgcca cacctcaaac       900
     cgcactcaga agtggttgca agaacatctg ccgttctggg caaaggatat gtggccgcca       960
     tccagccccg atcttaatcc gctggattat tcaatatggc gcgtcatgaa ggccaaggcc      1020
     tgttctaaac gccacccaag tacagcaagc ctccgacaaa cattgacccg tacctggaga      1080
     gaaatggacc cccgctacat tattaggacc tgccgtgcgt tccgaaagcg ggtggaggcc      1140
     gtaattgcag caaacggaaa ctcgatcgat gactaacata gtttaagact caaaaaaaca      1200
     tccccccttt aaataaataa aaaacataaa aaccgaaatt tttcagattt ttttttaatt      1260
     ttgacgcagc gcaatggtgc aaacattttc acgcatacgg                            1300
//
ID   ITmD37D_Ele7 repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37D DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37D_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1298
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1298
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37D-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~97% identical to consensus. This consensus
CC   is ~97% identical to the original sequence in [1]. TA TSDs. 27-bp
CC   TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1170
FT                 /product="ITmD37D_Ele7_1p"
FT                 /note="transposase."
FT                 /translation="MFAKEVVTSLLLAGKSVKQIAETVGCHLATVYRIKRA
FT                 LHDGTSPRKPGSGRPRSARSLRVIRSVKEKLKRNPIRSIRKLAKDANISKT
FT                 TMQRLVKDDLDSKSRARVKRHLVTDRIKALRLERSKILLSVFKKKRPIVVF
FT                 SDEKLFTVDPVCNSRTNRFISPQKMEDVPENVKFAFTTKHPAGVMVFGAVA
FT                 SNGLKMPPVFIKAGLKVNTEVYMNILKENVLPWMKDNFGEHEHVVFQQDGA
FT                 PCHTSKRTQMWLKENMEFWPKDVWPPSSPDLNPLDYSIWAYVQAKACERSH
FT                 PSVEALKASITKAWNSMSASYIQKVCSRFRSRLEKVIEQNGGHIE"
XX
SQ   Sequence 1298 BP; 395 A; 256 C; 304 G; 342 T; 1 other;
     cagtatggcc cataaaaaaa tgcgaaagtt tttgaagcct gtttttggat acattctaat        60
     gcatttttac ctatatttgg atgtgtgtgt aatctctagg catcgacctg tcaagtgatg       120
     taaacaaaac agagatattt tgaaacaaac gtttgtaaga tgttcgcaaa ggaagtagtg       180
     accagtttgc tcctcgcggg aaaatcggtg aaacaaattg cggagactgt gggttgtcac       240
     ttggccactg tttaccgcat caaacgtgct ctccatgatg gtacaagccc acggaagccg       300
     ggaagtgggc gtccgcggtc ggcacgttct ctaagggtga taagatcagt gaaagaaaag       360
     ttgaagcgga atccaataag atcgatccga aaattggcta aagatgctaa tatctcgaaa       420
     accaccatgc agcgattggt caaagatgac ttggattcaa agtccagggc aagagttaaa       480
     cgtcacctgg taacggatcg gattaaagca ctacggctgg agcgttcgaa gattttatta       540
     tctgtgttca agaagaaacg tccgatcgtc gtgttctctg atgagaaact ttttaccgtc       600
     gatccggtgt gcaactcacg tacaaacagg tttatttcgc cacagaagat ggaggacgtc       660
     ccagagaacg tgaaattcgc attcaccaca aaacatccag ccggagtcat ggtgtttgga       720
     gcagtcgcgt cgaatgggtt gaaaatgcct ccagttttta ttaaagctgg tttaaaagtg       780
     aacaccgaag tctacatgaa cattttgaag gagaatgtgc ttccatggat gaaagacaac       840
     ttcggagaac acgaacacgt tgtttttcaa caagatggag cgccatgtca tacttccaaa       900
     aggactcaaa tgtggctgaa ggaaaatatg gaattttggc cgaaggatgt ttggcctcct       960
     agcagtccag atttgaatcc cctggattat tccatatggg cgtatgttca agccaaagcc      1020
     tgtgaaaggt cccatcccag tgttgaagct ctgaaggctt ccatcacgaa ggcatggaac      1080
     tcgatgtctg cttcttacat acagaaggta tgctcccgtt tccgctcacg cctggagaaa      1140
     gtaatcgaac aaaacggtgg acacatcgaa taatgtaatc ttgacatgtt caataaatgc      1200
     attttcaaac caaatacaag wttttacttt tattatgtat caaaaagatg aagcaaaagt      1260
     ggaatacaga ttttcgcatt tttttatggg ccatactg                              1298
//
ID   ITmD37E-N1_AAe repbase;    DNA;    INV; 944 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous ITmD37E DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   ITmD37E-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-944
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1285-1285 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. TA TSDs. TIRs are 27 bp long.
XX
SQ   Sequence 944 BP; 318 A; 172 C; 186 G; 268 T; 0 other;
     aggtgtggcc cacttagaat tggaacaaac atctttggtt cttacaacga ctctagtggt        60
     ccaatttaga agctgaaccg tccatgtgtg ctctataaca ataataacat cacatgattt       120
     ttttcgcagc ttaattcgaa cgcacttctg agaaattcaa catggaagaa gagagaaggg       180
     aaataattgc gcacaaaaat ttgaaaaaac cgtcttgatc aggaatagaa attgcaaaag       240
     tgttaggttt ttcaataaat actgtgtggc tcgtactgaa taagtacgaa gtaactattt       300
     tgacagatcg caagccacaa aggaagcgtc gggcagttac tgtgcaccgt cagctgtgga       360
     ttaaaatcag gaccattgat tcaaatccaa acattttaga ccgcgatttg gccaaaaccg       420
     aactttttgc cgtgcagtac cgtgcaatgg attcgacttc ggatattgaa gcctccgatc       480
     ataccatgtc tgcagacaac caaataggga acaaaattag agaaatgtgg ccaaattccg       540
     taccatgaag ttgtttgatc aagtgttgac ggaatttaag gattttttca tgataggtga       600
     tacccaccta attgacccca actcagccca attaagagat tttgggctat tatgaagcgg       660
     aagctaagag cgaatcaaag tatcgccaaa acatcgacga actgtaaact aaatgggatg       720
     aacttgtcaa aaatatggat gaaaatagtg tgcgcaaatt aattaaccgt attccgggaa       780
     aagtccgaca atttcttata aaaggggatg aatatttttt tcttattttt cctttgaagc       840
     ttacaagcaa tgcaacattt gagttaaaac agaattcatt tttgttgaat tatatccaaa       900
     ttattccaat ttgtgtatgt tccaattcta aatgggccac acct                        944
//
ID   ITmD37E_Ele11 repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele11.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1280
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1280
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [1] (Consensus)
XX
CC   [2] Consensus update. ~89% identical to consensus. TIRs are 30 bp
CC   long. TA TSDs. The consensus is ~90% identical to the original
CC   sequence in [1]. This family encodes a DD37E-type transposase and
CC   is similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..1095
FT                 /product="ITmD37E_Ele11_1p"
FT                 /note="transposase."
FT                 /translation="MPSKQEEQRIKILLAHRENPSYSHAKLAKSLKVAKST
FT                 VTNVIKVFGERLSTARKPGSGGNRKPEAAATTKRVAGSFKRNPNLSLRDAA
FT                 NKLGVSSTTVHRAKKRAGLSTPNRNDKQNTTAKARSRRLYTTMLTKFDCVV
FT                 MDDETYVKADYKQLPGQEFYTAKGRGKVPDIFKHMKLSKFAKKYLVWQAIC
FT                 TCGLKSSIFIATGTVNQEIYVKECLNKRLLPFLKKHGCSVLFWPDLASCHY
FT                 GKKAMEWYAANNVQVVPKDKNPPNTPELRPIEKYWAIVKRNLKKTKKLLVT
FT                 RSSLRQTGVLRRRRWTRWLYKI"
XX
SQ   Sequence 1280 BP; 399 A; 276 C; 299 G; 306 T; 0 other;
     aagggtgata cggtcaaaat ttggtcaatt tcaacttgac gtatttcttt caattttgca        60
     tttaaaaaac ctgaacaccc ctcattttaa aggtgtgtgt gtgtagaatg ttgctcctat       120
     tttgattttg aaattcactc ttcagttgtc aaaatgccgt ccaagcaaga agagcagcgt       180
     atcaaaattt tgctcgcgca tcgcgaaaat ccgagctact cgcacgcaaa gttagcaaaa       240
     tcgctaaaag ttgccaaatc aaccgttaca aatgtaatta aagtgtttgg ggaacgtttg       300
     tcgacagcca ggaagcctgg atcgggggga aatcgaaaac cggaagccgc tgcgacgaca       360
     aagagagtag ccggtagttt caagcggaac cccaacctct ctctccgaga tgccgcaaat       420
     aagctgggtg tgtcatctac aaccgtgcat cgagccaaaa aacgagccgg actgtcgact       480
     ccaaatcgca atgataagca aaatacgacg gccaaagcgc gatctcggag gctgtacacg       540
     acgatgctga cgaagtttga ctgcgtggta atggacgacg aaacctacgt caaagccgac       600
     tacaagcagc ttccgggaca ggagttttat acagcaaaag gaagaggaaa ggtaccagat       660
     attttcaagc atatgaaact gtcgaagttc gcaaagaaat atctggtttg gcaagccatc       720
     tgtacctgtg gcttgaaaag cagcattttc atagcaaccg ggactgtcaa ccaagaaatt       780
     tacgtgaaag agtgtttgaa taaacgtctg ctgcctttcc tgaagaaaca cggttgttcc       840
     gtactgtttt ggccggattt ggcatcttgc cattacggta aaaaggccat ggagtggtac       900
     gccgccaaca acgtgcaggt ggttcccaag gacaagaacc ctcccaacac gccagagctc       960
     cgcccaattg agaaatattg ggctattgtc aagcggaacc taaagaagac caaaaaactg      1020
     ctagtgacga gaagcagttt aaggcaaact ggcgttctgc ggcgaagaag gtggacaagg      1080
     tggctgtaca aaatctgatg gcaggggtca agcgaaaggc ccggcaattc ggatttggaa      1140
     aagcggaagc ctaactgaat atttttcctg aattttatac tatttgaact tgaaaaagaa      1200
     atataatttg atttttaaat aaacgatttc accaatttac acgcattttc ccttgaccaa      1260
     attttgaccg tatcaccctt                                                  1280
//
ID   ITmD37E_Ele13 repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele13.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1296
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1296
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >93% identical to consensus. TIRs are 27 bp
CC   long. TA TSDs. This consensus is ~94% identical to the original
CC   sequence in [1]. This family encodes a DD37E-type transposase and
CC   is similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1168
FT                 /product="ITmD37E_Ele13_1p"
FT                 /note="transposase."
FT                 /translation="MASKQEENRRRILRAVMENPTASMRWIGRQLGITHTT
FT                 VSRVVKSFKESQTTERRAGSGRKSKTADPVKARKVLDYFKRNPNLSIRDAA
FT                 LKAKCSAWFVQQTMKRAGLRVFKVRKAPNRRDQQNTAAKSRARKLYREWLT
FT                 KPKCVVMDDETYIKADAKQIPGLEFYVAKSRFDVPEDIRKKKMDKFAKKYL
FT                 LWQAICQCGKLSKPYITTGTINSEIYRTECLQKRLLPFLRSHGGETLFWPD
FT                 LASCHYARSTLDWYRDNNVVFVPKTANPPNSPEIRPVERFWAIMKAKVRKS
FT                 SKVFKNELELKKAWMKVTKKVGSTIAQNVMRGLKGKVRAFSEGKDIE"
XX
SQ   Sequence 1296 BP; 398 A; 268 C; 326 G; 304 T; 0 other;
     aggcctgtac tcgaaaaaaa tgcaccattt ttatccgtgt gtaacttttt tgtccgtggg        60
     taaaaattga tgaaaatctg ggtataacta gattggagtg tattgtttac atgtgcaaaa       120
     tttcataaca atcggttcag tgattattga gatggcatcg aaacaagaag aaaatcgccg       180
     gagaattttg cgcgccgtca tggaaaatcc gactgcgagc atgagatgga tcggaagaca       240
     actgggaatc acccatacaa ctgtctctcg ggtggtaaaa tcttttaagg agtcccagac       300
     gaccgagcgg cgggctggaa gtggaagaaa atcgaagaca gctgaccctg tgaaggcccg       360
     gaaggtgttg gattatttca agcgtaatcc gaacctttcg attcgcgacg cggctctgaa       420
     ggccaagtgt tccgcctggt tcgttcagca aaccatgaaa cgagctgggc ttcgtgtatt       480
     caaggtccgg aaggcaccga accggcgtga tcaacaaaac acggcggcca aatcccgcgc       540
     aaggaagctg tatcgagagt ggttaacgaa accgaaatgt gtggttatgg atgacgaaac       600
     ctacatcaag gcagacgcaa agcagatacc ggggctggag ttctacgttg ccaaatcacg       660
     gtttgatgtt ccggaagaca taaggaagaa aaaaatggac aaattcgcca aaaaatactt       720
     gctctggcag gccatatgcc aatgcggtaa actgagtaaa ccgtacatta caacgggtac       780
     catcaacagc gaaatttacc gcaccgagtg cctccagaag cgtctgttgc ccttcctgcg       840
     gtctcacgga ggcgagacat tattttggcc ggatctggca tcatgccatt acgcgcgatc       900
     gacgttggat tggtacagag acaataacgt tgtttttgta ccaaaaaccg ccaacccccc       960
     aaattcacca gaaattcgtc cggtggaaag attttgggct ataatgaagg ccaaagttcg      1020
     aaaatcgtcc aaggtgttta aaaacgagct ggaattgaag aaagcatgga tgaaagtgac      1080
     caaaaaggtt ggctccacca ttgcacaaaa tgtaatgagg ggtcttaagg gaaaggtgcg      1140
     ggctttcagc gaaggaaagg acattgaata aagtaattat gccgaaacat aatccatatg      1200
     tattagttca ttccctgaaa gtttcaagaa aatccgactt aaaataaatt tttggcgaac      1260
     acttttgtct ggtgcatttt tttcgagtac aggcct                                1296
//
ID   ITmD37E_Ele3 repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1294
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1294
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~97% identical to consensus. TIRs are 28 bp
CC   long. This consensus is ~98% identical to the original sequence
CC   in [1]. This family encodes a DD37E-type transposase and is
CC   similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1158
FT                 /product="ITmD37E_Ele3_1p"
FT                 /note="transposase."
FT                 /translation="MESKEQLVRDKILRIHHENKDLSHRSIAKTLGIANST
FT                 VSRVIKRFEERLTTDRKPRSEGKSIPYNTKNHNRVVGAFNRNPNASVRDVA
FT                 KNLHLSRSFVQKAKTKAGLRTFKVQKAPNRDEKQNKSAKTRARKLYLNMLT
FT                 KVECCIMDDETYVKADFKQIPGNLFFTAKDKFSVPEHVRTQKMSKFAKKFL
FT                 VWQAICTCGKRSAPFVTQDTMNGQVYMKECLQKRLLPLLKAHNVPTIFWPD
FT                 LASCHYSKDVLKWYADNKVNFVPKMFNPPNTPELRPIEKYWAIMKQHLLKR
FT                 PKVVKTVEELKKVWVYMQKTVDSQVVQNLMAGVKAKVRAFAYGL"
XX
SQ   Sequence 1294 BP; 382 A; 296 C; 318 G; 298 T; 0 other;
     agggtgtcca cgatgaaatt gccacactat gaaattgctc taacttttta accgttgggt        60
     agaatttaat gaaaatttgg gtggatttag ttcatagtgc attatttaca tcctgcaagt       120
     tttaaagtcc tgtgatcaaa actcgcggaa atggagtcga aagaacagct cgtgcgtgat       180
     aaaatcttgc gcattcatca cgagaacaag gatctctcgc atcgttccat cgctaaaacg       240
     ttgggaatcg cgaattccac ggtgtcgcga gtgattaagc ggttcgagga acgattgacc       300
     accgatcgga agcccagaag tgaaggaaaa agtattccgt acaacaccaa aaatcacaac       360
     cgcgtagttg gggccttcaa ccgaaacccg aacgcctccg ttcgggatgt ggctaagaac       420
     ctgcacctaa gccgaagttt tgtccagaag gccaaaacta aggctgggct tcgaacgttc       480
     aaggtacaaa aggcccctaa tcgcgacgag aagcagaaca agtccgccaa aacccgtgcc       540
     aggaagttgt acctcaacat gctgacgaaa gttgaatgct gcatcatgga cgacgaaaca       600
     tatgtgaagg ccgacttcaa acagatcccc ggcaacctgt ttttcacggc caaggataag       660
     ttcagcgttc cggagcatgt ccgcactcag aagatgtcca aatttgcgaa gaaattcctg       720
     gtttggcaag ccatctgcac gtgcgggaag cggagtgcac ctttcgtgac ccaggacacg       780
     atgaacggac aggtgtacat gaaagagtgc ctccagaagc ggctgcttcc tctcctgaag       840
     gcccacaacg tcccaacaat cttctggccg gatttggcct catgccacta ctccaaggac       900
     gtgctgaagt ggtatgcgga caataaggtc aatttcgtgc cgaaaatgtt caaccctccc       960
     aacactccgg agctccgccc catcgagaag tactgggcga ttatgaagca gcaccttctt      1020
     aaacgaccta aggtagtgaa gacagtcgag gaactgaaga aagtatgggt ttacatgcaa      1080
     aaaacggttg attcacaggt tgtgcagaat cttatggccg gggttaaggc caaggtgcgg      1140
     gcatttgcgt atggactgta aataaaatac gagtaaaatg gtaaaatgaa gtttaatagt      1200
     tatttttcaa tccctgaaaa tttgatggca atcggatgaa aactcgaatt ttgcgaatca      1260
     attttgtgtg tggcaatttc atcgtggaca ccct                                  1294
//
ID   ITmD37E_Ele5 repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1296
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1296
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~93% identical to consensus. TIRs are 22 bp
CC   long. TA TSDs. This consensus is ~92% identical to the original
CC   sequence in [1]. This family encodes a DD37E-type transposase and
CC   is similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1168
FT                 /product="ITmD37E_Ele5_1p"
FT                 /note="transposase."
FT                 /translation="MHSKQEELRQQILGAVIDNPGQSHRWIGKRLGIHHST
FT                 VSRVVKMFQETKTIERRAGSGRKPKTEYPEKARKIRQYFKNNPNLSTRDVA
FT                 KKVNSSKWFVQQTMKRAGLRVFKVRKAPNRTDKQNTVAKLRARKLYREWLV
FT                 KPGCLVMDDETYIKADTKQIPGLEFFVGTSRMEVPEKFRKRKMDKFAKKYL
FT                 LWQAICECGRYSKPFVTTGTINGQIYREECLQKRLLPFLRSHRGPTLFWPD
FT                 LASCHYAKPVMDWYEAKGVNVVPKEANPPNTPELRPIEKFWAIMKKKLKKS
FT                 GKTFKTDEALKKNWEKLCKKDGQSLAQDLMSSVKRNVRAFSLGEEIQ"
XX
SQ   Sequence 1296 BP; 380 A; 272 C; 345 G; 299 T; 0 other;
     aagattggac tcggaaaaaa tgcgacactt tgttttgggt gtaacttttt atcgcgtggg        60
     taaaaattaa tgaaattttg ggtaatacta gtttagagtg ttatgtttat gtgtgcaaaa       120
     ttttatcgcg atctgtcaag tagttttcaa gatgcattcg aaacaagaag agctacgcca       180
     gcaaatcttg ggcgcggtga tcgataatcc tggtcagtcg cacagatgga tcggcaaaag       240
     gcttggaatc caccattcca ccgtgtcccg cgttgtgaag atgttccagg agacgaagac       300
     catcgagcgg cgcgctggaa gcggccgaaa accgaaaacg gaatacccag agaaggcgcg       360
     gaagataagg cagtacttta agaataaccc gaacctttcc acccgagacg tggccaaaaa       420
     ggtcaattcg tcgaagtggt tcgtccagca gaccatgaag cgggctgggc tacgtgtttt       480
     taaggtcagg aaggcgccaa accggactga caagcaaaac acggtggcca aattgcgtgc       540
     gcggaagctg taccgtgagt ggctggtcaa gccaggctgt ctcgtcatgg acgacgagac       600
     atacatcaag gcggacacca aacaaatccc cggcctcgag ttttttgtcg gtacgtcccg       660
     catggaggtt ccggaaaagt tccggaagag aaagatggac aaattcgcga agaagtacct       720
     gttgtggcag gcgatctgcg agtgcggacg gtacagcaag ccgttcgtta caaccggcac       780
     cataaacggg cagatttatc gagaggaatg cttgcagaag cgcttgctgc ccttcctccg       840
     ctctcaccgt ggtcccacgc tgttctggcc ggatctcgct tcgtgccatt acgccaagcc       900
     tgtaatggat tggtacgaag cgaagggcgt taatgtggtc ccgaaggagg cgaacccgcc       960
     aaatacacca gaacttcgtc cgatcgaaaa gttttgggcg ataatgaaga agaagttgaa      1020
     gaaaagcgga aaaacattca aaaccgatga agctttgaag aaaaactggg agaaattgtg      1080
     taagaaagat gggcaaagcc tcgcccaaga tctcatgagc agtgttaaga gaaatgtacg      1140
     agcattcagc ttgggggagg aaattcaata aataaattat gccaaaacat agctaatata      1200
     tagttattta atccctgaaa atttgagaag tatccgattt aaaatgaatt tttggtgatc      1260
     atttttgtgt gtctcatttt ttccgagtcc agtctt                                1296
//
ID   ITmD37E_Ele6 repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele6.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1298
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1298
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >91% identical to consensus. TIRs are 28 bp
CC   long. TA TSDs. This consensus is ~93% identical to the original
CC   sequence in [1]. This family encodes a DD37E-type transposase and
CC   is similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           96..1121
FT                 /product="ITmD37E_Ele6_1p"
FT                 /note="transposase."
FT                 /translation="MCICLRCVSFTSRCAIVVKMESEEQQRRKEILRTYLE
FT                 NPDLSHRAISRKLGMVHSTVSRVLNRYHERLTIDRKEKSGKNGSPYSVKDH
FT                 KRVVQAFKRNPNSSVRDVAKKLNLSKTFVQDAKKREGLHTYKVQKAPNRDE
FT                 RQNTVGKTRARKLYTQMLTKPHCLVMDDETYVKADFRQLPGLQFFTAHHKF
FT                 DVPEDVRKQKMSKFAKKYMIWQAICSCGKRSTPFVTTGTVNGQVYLKECLQ
FT                 KRLLPLLRSHDGPTIFWPDLASCHYSKEVLEWYKAKEVNFVPKHLNPPNAP
FT                 ELRPIEKYWAIMKQALRKHPKEVKSEEDMKKKWTATQKKSWSKCCTGPYE"
XX
SQ   Sequence 1298 BP; 397 A; 252 C; 316 G; 333 T; 0 other;
     aagggtgtac ggaatcaaat tgcaccactt ttaaatggct gtaacttttt acccgttggg        60
     tattttctat tgaaattttg ggtgtaattt gttcaatgtg tatttgttta cgctgtgtaa       120
     gtttcactag cagatgtgca atcgttgtga agatggagtc ggaagaacag cagcggcgca       180
     aagaaatttt gcgcacgtac ctcgaaaatc cggatctatc tcatcgtgcc atcagcagaa       240
     agctgggaat ggtacattct acggtgtctc gtgttttaaa tcggtaccac gaacgtttga       300
     ccatcgatcg gaaagaaaaa agtggcaaaa atggatctcc gtatagtgtt aaggatcaca       360
     aacgggtagt tcaagctttc aagaggaatc ccaacagttc agttcgagat gtggcgaaga       420
     aactgaatct atccaaaact ttcgtgcaag atgcgaaaaa acgtgaagga ctacatacgt       480
     acaaagtcca aaaggcgcct aatcgcgatg aacggcagaa tacggtaggt aaaacacgtg       540
     cacggaagct ctacacccag atgttgacga aaccacattg cctcgttatg gatgatgaga       600
     cgtatgtaaa agcagacttc cggcagcttc cggggctcca gtttttcact gctcatcata       660
     aattcgatgt ccctgaggac gttagaaagc agaagatgtc aaagtttgcc aaaaaatata       720
     tgatttggca agcaatttgc tcgtgtggaa agcggagcac cccattcgtg acaactggaa       780
     cggtcaatgg gcaggtgtac ctaaaggaat gcctccaaaa gcgtctactt cctcttctga       840
     ggtcacacga tggtcctacg attttctggc cggatttggc ctcgtgccat tactcgaaag       900
     aggttttgga gtggtacaag gctaaggagg tcaatttcgt gccgaagcat ctcaaccccc       960
     cgaacgcacc ggaactgcgg ccaattgaaa agtactgggc catcatgaag caggcacttc      1020
     ggaagcatcc taaggaagtg aaatcggagg aagatatgaa gaaaaaatgg actgccacgc      1080
     aaaaaaaaag ttggtccaag tgttgtacag gaccttatga gtagtgtgaa gagaaaagtt      1140
     cgtgcatttg gatatggaat tgaaattgaa taaaacaaac atgggaaaat attcataaca      1200
     tgttttattt tactccctga aagtttgaag atgattggtt gaacgtgcga attttgccaa      1260
     atatttgtgt gtgtcgcaat ttgattccgt acaccctt                              1298
//
ID   ITmD37E_Ele9 repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An ITmD37E DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; ITmD37E_Ele9.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1296
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1296
RA   Kojima K.K. and Jurka J.;
RT   "ITmD37E-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >95% identical to consensus. TIRs are 30 bp
CC   long. TA TSDs. This consensus is ~96% identical to the original
CC   sequence in [1]. This family encodes a DD37E-type transposase and
CC   is similar to Tx_mos from Toxorhynchites amboinensis.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1168
FT                 /product="ITmD37E_Ele9_1p"
FT                 /note="transposase."
FT                 /translation="MASNEEIVRQQILGTHFENPNASHRWIGKQLGIAHST
FT                 VSHVIKTFKDRKTTKRKNGSGKKRGTSNPEKARMVLNQFKRYPNISIRDVA
FT                 KKAKVSVCFVQKTMKRSGLHVYKVQKAPNRSEKQNSVAKTRARKLYREWLT
FT                 KPFCVVMDDETYIKADTKQMPGQEHYVATSKLAVPESVRKKKLSKFAKKFL
FT                 VWQAICGCGEMSQPFITSGTVNGQIYKDECLQKRLLPFLRSHDGPTLFWPD
FT                 LATCHYARPVLDWYKDNDVVFVPKDVNPPNTPELRPIEKFWAIMKAKLVKT
FT                 PKLIENELELKKAWLKVSKQVAPIIAQNLMKGVKAKVRAFGLGEEVQ"
XX
SQ   Sequence 1296 BP; 420 A; 268 C; 295 G; 313 T; 0 other;
     aagactgtat tcgatgaaat ttggacacac gcaattgttc gtaacttttt agcgtgtggg        60
     taaaaattat tgaaattttg actgaatata tttcattgtg taatgtttac ataggccgag       120
     tttcgtgaaa atcggtcgag tgatttcagt gatggcttcg aatgaagaaa tagtgcgcca       180
     acaaattttg ggcactcact tcgaaaaccc aaacgcttct catcgatgga tcggaaaaca       240
     gctcggaatc gcacattcaa ccgtatctca tgtgatcaaa acgttcaagg accgtaagac       300
     aaccaagcgg aaaaatggta gtggcaaaaa acgtggcaca tcaaatccgg agaaggccag       360
     gatggtattg aaccaattta agcgttatcc caacatttcg atcagggatg ttgcgaaaaa       420
     ggcgaaagtt tcagtttgtt ttgtgcagaa aacaatgaaa cgttctggat tacatgtgta       480
     caaggtccag aaggcaccga accggagcga aaaacagaac tcggtggcca aaactcgtgc       540
     aagaaaactg tacagggaat ggctcacaaa accgttctgc gttgtgatgg acgatgagac       600
     ctacattaaa gccgacacca aacaaatgcc aggacaggaa cactacgtcg ccacctctaa       660
     gttggccgtt ccggagagtg tacggaagaa gaaactgtca aaattcgcca aaaaattcct       720
     tgtctggcaa gcgatctgcg gatgtggcga aatgagtcag cccttcatca cctctgggac       780
     cgtcaacggg caaatctaca aggacgaatg cctccaaaaa cgacttctgc ccttcttgag       840
     atctcacgat ggcccgacac tgttttggcc agatttggcc acttgccact atgcccggcc       900
     cgtcttagac tggtacaaag ataatgatgt agtttttgta ccaaaagacg tcaaccctcc       960
     aaacactccg gaacttcgcc caattgaaaa attttgggca atcatgaagg caaagctcgt      1020
     taaaactcca aaactgatag aaaatgaact tgaactaaag aaagcgtggt taaaagtaag      1080
     taagcaagtc gctcctatca ttgcccaaaa tctgatgaaa ggggtcaagg caaaggtgcg      1140
     ggcatttggg ttgggagaag aggttcaata aaccaatgat gtcaaaactt aaccatttag      1200
     tagtgcttta tttccagaaa gtttgaaaag aatcgggctc aaggaaaatt tttggtgacc      1260
     tatttagtgt gtccaaattt catcgaatac agtctt                                1296
//
ID   IVK_DM      repbase;    DNA;    INV; 5402 BP.
XX
AC   .
XX
DT   27-JUN-2000 (Rel. 5.05, Created)
DT   14-FEB-2011 (Rel. 16.02, Last updated, Version 2)
XX
DE   IVK_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag; I_DM; JOCKEY clade; IVK_DM; You.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5402
RA   Kapitonov V.V. and Jurka J.;
RT   "IVK_DM.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
RN   [2]
RP   1-5402
RA   Berezikov E., Bucheton A. and Busseau I.;
RT   "A search for reverse transcriptase-coding sequences reveals new
RT   non-LTR retrotransposons in the genome of Drosophila
RT   melanogaster.";
RL   Genome Biology 1(6), 12-12 (2000).
XX
DR   [1] (Consensus)
XX
CC   IVK_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   It generates ~10-bp target site duplications upon its integration
CC   into the genome.
CC   IVK_DM is a consensus sequence for a family of recently active
CC   non-LTR retrotransposons in Drosophila melanogaster.
CC   There are ~20 copies of IVK_DM in the genome; they are ~95%
CC   identical to the consensus sequence. IVK_DM is most close to
CC   the I_DM (59% nucleotide identity).
CC   IVK_DM encodes gag-like (ORF1: 192-1511) and reverse
CC   transcriptase
CC   (ORF2: 1607-5344) polyproteins.
CC   This consensus is ~99% identical to You reported in [2].
XX
FH   Key           Location/Qualifiers
FT   CDS           192..1508
FT                 /product="IVK_DM_1p"
FT                 /note="ORF1 (GAG)."
FT                 /translation="MAPGPLNLGDNRFASLSVSPKAKKKRPFQKLQVDFPD
FT                 LPETQCKNPRYLVVSSKNSPKTISDYNCFAVHRALKYISKDITSISNLRDG
FT                 NLLLLVNSREVSDKFIKVTSLPGLCDIECKLHNTLNFVKGTIYAPCLINIP
FT                 ENEIVEELKSQNVHSVFKFTKMIDGTPKPFGKILVTFDRFTLPSKLTVSWH
FT                 TVKVSEYIPNPMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPCTRIFC
FT                 ANCTGEHPASSPECPQYQTQKQLLHIKTSKKCSFHEARTILKQQQNTTNNP
FT                 TLTYSTVANQSTASVMLVKKSRNPNTITNTDLPTSSTKVPAPLSPTYPTSR
FT                 TNSLNLEENLTSSPSTSAKTDFSYLSPTSKLKTCMERSRSLRAEANALLGQ
FT                 TYNDDNNTLMTSRSNSNESIASQTSNLQTKINTTDSDDTMDDPDS"
FT   CDS           1607..5287
FT                 /product="IVK_DM_2p"
FT                 /note="ORF2 (Reverse transcriptase)."
FT                 /translation="MTITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQET
FT                 NLPCNSTNFICPKEYSGYFHNFSYNTSAKQGIGVLIKRNVPHTYRNINSSI
FT                 LCSALQLKFEQVINIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSW
FT                 SPLWGSPRTNTRGKKIESVILENSLIVLNDGSPTHLSTHNTFTHIDISLIS
FT                 PQIAHMCSWSISDNLHGSDHFPITIHINTPTRPDNTLPLPKYKTDQANWKR
FT                 FNESCEKSAAYWTVGCLNQQVAQMTKVIRAAANCSIPQTKRVIHKAKVPWW
FT                 NANLQQLRDQKQRLFSSYKANTNDTNLIRYKKANALFKKAVLSAKRNSLEK
FT                 FTSKISPVSSTKKVWSDIKRLAGIPPTPFKYIKSNSGTLTGSFDIAEEFAL
FT                 SWSKYSSDQNFSAEYIRVKNRYLLEPYAIDSLSPSATSLDSNFTLLEIENS
FT                 VAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI
FT                 IIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHN
FT                 QVAFKRNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVL
FT                 CRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSV
FT                 VLFMIAIEDINDIVTRHKDIYISLYADDAIIFTKIKNINTVREKFLEILQE
FT                 INSWGATSGASLAIEKCQTLHICRKQRCNLSDIVFNSRTIKDVNFLKILGI
FT                 TFDSKLLFKQHCQTLRKQLETRFNIIKFLSSKYSYIHIKTLIDITRALMLS
FT                 KIDYGLPIFGWCAKSHLKKLQAPYHGAVRRAIHAFPTSPVACTLAESGLPS
FT                 IQSRVEETTLMLIPKLYTTSNCLLTKDFGAIFKQKRKFKCISTLRRCANYI
FT                 KLLDLPLPKPRRPFKSPALWGSKQPNINLQIYNAAKKDTGRLEYQKRFMSA
FT                 QEDLGVKNWIYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFA
FT                 ILKACQFASKNAGKSVICTDSLSSLSAIRNWNHNDPTTQEVRHILSSHPKK
FT                 ITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKE
FT                 KKLSEWALFMHRYQSINPNCIMFKPPTNVHKRECATFIRLRIGHTQSTHQH
FT                 LLMRSARPTCQLCGDELTVDHILNACSQLHSIRSHLFGTHSLSNCLSIPSC
FT                 ENISKIYKFVQKAKFII"
XX
SQ   Sequence 5402 BP; 1780 A; 1425 C; 827 G; 1370 T; 0 other;
     cagtcaccga ctatctctct tcgagtgcgg acgtctgtgt ctttccaatt gtgtgcgctt        60
     tgcttatcgc gtaattacca tcgcccagct tatcgccgtt acattgatct ttatcatctt       120
     atcttcttga tcttcttatc aacgcgtacg tgcaaatcca aaaacattca atatccataa       180
     atttattaac catggccccc gggccactca atttggggga taatcgcttt gccagtctca       240
     gcgttagccc caaagctaag aaaaaaagac cctttcaaaa attacaagtt gatttcccag       300
     acctccctga aacgcagtgc aaaaatccga gatatttagt ggtctcatca aaaaactctc       360
     cgaaaaccat atccgactac aactgctttg ctgtccatag agcccttaag tatatcagca       420
     aagacattac atccatctct aatcttcgcg atggtaacct tctcttgctg gttaactcca       480
     gggaagtaag tgacaaattt atcaaagtga cctctttacc tggcttatgc gatatcgagt       540
     gcaagctcca caacactctt aactttgtca aaggcaccat ttacgctccc tgtcttatta       600
     acattccaga aaacgaaatt gttgaggaac taaaatctca aaatgtacac agcgtattta       660
     aattcaccaa aatgatcgac ggcaccccca aaccatttgg aaaaattctc gtaacgtttg       720
     accgtttcac tcttcccagt aaactaacgg tttcctggca cacagttaag gtgtcagaat       780
     atatacccaa cccgatgaga tgtaagtctt gtcaattatt gggccacaca tcaaagcact       840
     gcaaaaaccc acccgcctgt gtatcatgca atctcgctcc ccaccttccc gtgccatgca       900
     ctcgcatttt ctgtgcaaac tgcaccggcg aacacccagc ctcctcaccc gaatgcccac       960
     aataccaaac acaaaaacaa ctgctccaca tcaaaacaag caaaaaatgc agtttccatg      1020
     aagctcgcac tatactaaaa caacaacaaa acacaacaaa taaccccacg cttacctact      1080
     cgaccgtcgc aaaccaaagc acagcatccg tgatgcttgt caaaaaatcc cgaaacccta      1140
     acacgattac aaacaccgac ttgcccacca gctcgacaaa agtaccagct ccgctctcac      1200
     caacgtatcc cacttctcgg acgaactctt tgaatctcga agagaatctt acttcctccc      1260
     caagcacctc tgccaaaact gatttctctt acttaagccc aacaagtaaa ctgaaaacat      1320
     gtatggaacg atctcgctcc cttagggcgg aagcaaatgc tctattagga caaacctaca      1380
     acgacgacaa caatacatta atgacctcaa gatccaactc aaacgaatca attgcttcac      1440
     aaacctcaaa cctacaaaca aaaatcaaca caacagactc agatgacact atggacgatc      1500
     ccgactccta gtcctgatcc tctcaccctt accttcatat acacacacca caaattaata      1560
     acagtccaac aaaaaacaat aaataaaaaa aaaaaaattt ttaatcatga caattactat      1620
     attacaatgg aacatccacg gcatttttaa taattacaac gaactgacac tactcataaa      1680
     agaccatgca cccgatattg tatttttgca ggaaaccaac cttccatgta attctacaaa      1740
     ttttatttgc cccaaagaat atagtggtta cttccacaat ttttcttata acacctcagc      1800
     caaacaaggc attggtgttc ttattaaaag gaatgtccca catacatacc gtaacattaa      1860
     ctccagcata ctctgctccg cactgcagct taaatttgaa caggtcatta atattgttaa      1920
     tgcgtacatc ccaccaagtc aaatcttttc atcctctgac atatcagaaa ttctacaaaa      1980
     tcttaacgga tccacaatac tcctgggtga tcttaactca tggagtcctt tatggggttc      2040
     gcctcgcaca aatacaaggg gtaaaaaaat tgaaagcgta attcttgaaa acagcctaat      2100
     tgttcttaac gacggttccc cgactcacct ttcaactcac aacacgttca ctcacatcga      2160
     tatctcactg atatctccac agatagccca tatgtgcagc tggtctatat cagataatct      2220
     ccatggaagt gaccactttc ccataaccat ccacataaac acacctaccc gtcccgataa      2280
     cactttaccc ctgcctaaat acaagacaga ccaagcgaac tggaaacgct ttaacgaaag      2340
     ttgcgaaaaa tcagcagcat attggacggt cggttgccta aatcagcaag tcgcacaaat      2400
     gacgaaagtc atacgagcag ctgcaaactg tagcattccc caaacgaaaa gagtgatcca      2460
     caaagccaaa gtgccatggt ggaacgctaa ccttcaacag cttagggacc aaaagcaacg      2520
     cttgttctcg tcctacaaag ccaatacgaa tgatacaaac cttatccgat acaaaaaagc      2580
     aaacgcgctt ttcaaaaaag ctgtactttc ggccaagcgt aactcccttg aaaaatttac      2640
     ttccaaaatc tccccagtat cctccacaaa aaaggtctgg tcagatataa aacgcctagc      2700
     cggcatccct cccactccgt tcaaatatat caaatccaac tcgggtactc taactggatc      2760
     atttgatatc gccgaagagt ttgccttatc ttggtctaaa tactcttctg accaaaattt      2820
     ttcagcagaa tatatacgag taaaaaatcg gtatctttta gagccctatg ccatcgactc      2880
     actttcccca tcggctacat ccttagattc caatttcaca ttgctcgaaa tagaaaattc      2940
     agtagcaaaa gcaaaaggga aaagccctgg ggctgacaga gtatcatacc ctatgctcaa      3000
     aaacctatct ccccacctaa aaacaaaact tttagacatt tttaatcaaa tattaaccac      3060
     tggaaaatac ccacatacat ggagatcggc tatcattatc cctatatcaa aacctaacaa      3120
     acccccttcc gatattaaca gctaccgtcc aatctctctg ttatcctgtc tgggaaaaac      3180
     actagaaaaa ataatagcac aaagacttac ctggttcatt aaacgccaca acctaatttc      3240
     ccataatcaa gttgccttta aaagaaatca tagcacgatg gacgcgttat tgcgtatcca      3300
     acacttcgcg tcgaacgctc tttcgaccaa aaatcacgtc tctatcttgg cgacggattt      3360
     tgaaagagcc ttcgatcgcg tggggattca cgccgtactt tgcagactcg agcgctgggg      3420
     cattggtcca aggctttata accttattaa agccttcatg accaatcggt ccttcagggt      3480
     tcgaataaac aatgtcacat cgaactccca cattttacac aatggaatcc cgcagggttc      3540
     gccactttcg gtggttttat ttatgatagc tattgaagat ataaatgaca ttgtaactcg      3600
     gcataaagat atttacatct cactatacgc agacgacgca ataatcttta caaaaataaa      3660
     aaatattaac acagtcagag aaaaattctt agaaatattg caagaaatta actcgtgggg      3720
     agcaacctct ggggcctctc ttgccattga aaaatgccaa actttacata tctgtcggaa      3780
     acaacgttgc aacctttccg acattgtctt taacagccgc acaataaaag atgtaaactt      3840
     tttaaaaatc ttggggataa ccttcgactc caaactactt tttaaacagc actgtcagac      3900
     tctaagaaaa caactggaaa ctagatttaa cattattaaa tttctatcat ctaaatattc      3960
     ttacatacat attaagactc tcatagatat tacgcgcgca ttaatgctat ctaaaattga      4020
     ctacggactg ccaatcttcg gttggtgtgc taaatcacac ttaaaaaagc tacaagcccc      4080
     atatcacgga gcggtccgtc gcgccattca cgcatttccc acatctccag tagcgtgcac      4140
     attggcagaa tcgggtctcc cgagtatcca atcacgcgta gaagaaacta cattgatgct      4200
     tatcccgaag ctgtacacca cgtccaactg cctgctaacc aaagacttcg gagccatatt      4260
     taaacaaaag cggaaattca agtgcatatc caccctaaga cgttgcgcca actacatcaa      4320
     gctacttgac cttcccctgc ctaagcccag gaggcccttc aaatcgccag cactttgggg      4380
     ttccaaacag cctaacataa accttcaaat atacaatgct gccaaaaagg atacaggtcg      4440
     cctagaatac caaaaacgtt ttatgagcgc acaagaagat cttggtgtga aaaactggat      4500
     ctacaccgat ggttctaaag tcaccggcgc aactactttt gcggttgttg actctaaccg      4560
     taaaataatt gcaggaggta ggcttccgtc ctacaactcc atatttacag ccgaagcttt      4620
     cgccattctc aaagcatgcc aattcgcttc caaaaacgct ggaaaatctg ttatctgcac      4680
     agacagcctc tcctctcttt ccgctatacg caactggaac cataatgacc ccacaacaca      4740
     agaagttagg cacattctaa gttctcaccc aaaaaaaatc accttactct gggttcccag      4800
     tcatcaaggt attcatggga atgaacttgc tgacaaagcc gcccaagaga tgaggcttac      4860
     accatcaatc ctgttcactc cgtttaactc caaggaccta aaaagtcgaa tcaagttata      4920
     cctcaaagaa aagaaactct ccgaatgggc actcttcatg cacaggtacc agtctatcaa      4980
     tccgaattgc atcatgttca agccaccaac gaacgtacat aaacgggaat gcgcgacctt      5040
     tatccgtcta cgcatcgggc acacccaatc cacacatcaa cacttactga tgagatcggc      5100
     gcgaccaaca tgccaactat gcggggacga gctcaccgtt gaccatattc tcaacgcctg      5160
     cagtcaattg cactcaatta gatctcactt atttggtaca catagtctct cgaattgttt      5220
     aagtatccca tcctgtgaaa atatctcaaa aatttacaaa tttgtccaaa aagctaagtt      5280
     tattatataa agcaattaac ccataagtct cgagtcgaag gcccccgtag ctagtactca      5340
     ttaaatttaa ttaggtttag tattgtatac tatatttaat tttgttaaat aaaataaata      5400
     aa                                                                     5402
//
ID   I_DM        repbase;    DNA;    INV; 5374 BP.
XX
AC   .
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   08-JUN-2011 (Rel. 16.06, Last updated, Version 4)
XX
DE   D.melanogaster (W-IR1 mutation) I factor DNA, complete cds.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; DMI; I_DM.
XX
NM   I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Fawcett H.D., Lister K.C., Kellett E. and Finnegan J.D.;
RT   "Transposable elements controlling I-R hybrid dysgenesis in D.
RT   melanogaster are similar to mammalian LINEs.";
RL   Cell 47(6), 1007-1015 (1986).
XX
RN   [2]
RP   1-5374
RA   Jensen S.;
RT   "Removal of 99 bp from the 5' end (flanking region) and
RT   corrections of internal sequence.";
RL   Direct Submission to Repbase Update (08-JUN-2011).
XX
DR   [2] (Consensus)
XX
CC   After sequence correction at two positions (ref. 2), this
CC   recently transposed I element from the�w-IR1�mutation differs
CC   only at position 4 relative to the w-IR3 insertion ( ref. 1), and
CC   only differs at six nucleotide positions from the I-factors found
CC   in the sequenced Iso1A strain. ORFs are identical all in these
CC   different copies.
CC   This sequence originally had an accession No. M14954. However,
CC   due to internal corrections of sequencing errors it is currently
CC   listed as "consensus" to indicate that it is different from the
CC   originally deposited Genbank sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1464
FT                 /product="I_DM_1p"
FT                 /translation="MTDPPNIYKITSKTYQSQLGEPKFIIIKRNDNNSFER
FT                 TSPFIIKKSVDFACGGEVEGCKRTRDGNLLIKTKNELQARKLLKLTKIADE
FT                 DVTASEHKTLNFSKGVIYCNDLRHIDEDTILQELKPQKVSEVKKIMKRQNP
FT                 NSNSDTNNITLVETGLIIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKK
FT                 CLRFGHPTPICKSVETCINCSETKHTNDGEKCTNEKNCLNCRNNPELDHQH
FT                 SPIDRKCPTFIKNQELTAIKTTQKVDHKTAQHIYFERHGFQTKNTYAKTLT
FT                 NGTTQRTTNTPSPNIHTNTTQSQQQNPHHTPKSAAQNTSAKTPTTEPAKTT
FT                 LLSNQPHQHHHHHSYDKLEDMDTDYTPTRKPSTTYSSQLTEDLKIKIFPKD
FT                 KSNNLSINLKASKLKAKAHKNKHTNNSDSESI"
FT   CDS           1536..5192
FT                 /product="I_DM_2p"
FT                 /translation="MSLTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQET
FT                 HIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITIDIEAIA
FT                 INIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHPSW
FT                 GSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTHIDLTLCSPILA
FT                 PHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRPFFKLKEANWEQFNALT
FT                 HQTNKKYPTSHNVNKEAALINRIILYSANLSIPQTSPNTHPYRVPWWNKHL
FT                 DQLRKEKQLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTST
FT                 IHPTTPSSKIWANIRRFCGLNPAKQIHAITNPVNNETTLASNEIANIFAQH
FT                 FSDLSGDWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITYLELSSALQTL
FT                 KGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNSHIPQAYKTSLIIPIL
FT                 KPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFK
FT                 KGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKT
FT                 GPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFN
FT                 KLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENWCSYS
FT                 GASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWN
FT                 THINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLY
FT                 GHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQI
FT                 AKLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKL
FT                 HKNKPPWTLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDG
FT                 SKINYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKF
FT                 IICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGN
FT                 ELADQAAKSASSMPLILTPNINTTDIKKHLKADLATKQKEHIINCSPWYQS
FT                 INTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTC
FT                 PFCQGDISLNHIFNSCPSLLQTKQDIFNNTNPLDLLSKPNPDNIQKLILFL
FT                 KKTKLYHKI"
XX
SQ   Sequence 5374 BP; 2178 A; 1447 C; 605 G; 1144 T; 0 other;
     cattaccact tcaacctccg aagagataag tcgtgcctct cagtctaaag cctcgcttcg        60
     cgtaagccca aaactcttat cagcaaaatc ttgataaaca aatatcaacc acaaagagaa       120
     aataaaaaac ttaacaacaa aaacaacaat accgctaatc cgggctcaag cccttaacca       180
     acaatcatga cagacccacc aaacatttac aaaatcactt caaaaacata ccaatcccaa       240
     ttaggcgaac ctaaatttat aattattaaa agaaatgaca acaactcttt cgaaagaact       300
     tcaccattca tcataaaaaa atcggtggac tttgcctgtg gaggagaagt tgagggatgc       360
     aaacgtacaa gagacggcaa cctgctaata aaaaccaaaa atgaattaca agccagaaaa       420
     ctcctaaaac taacaaaaat tgcagatgag gatgtaacag caagtgaaca taaaacatta       480
     aacttctcta agggagttat ttactgtaac gaccttagac acatcgacga agacacaatt       540
     ctacaagaac taaaaccaca aaaagtatct gaagttaaaa aaataatgaa acggcaaaac       600
     cccaactcta actccgacac caacaacatc acattagttg aaactggact cataattata       660
     acctttgaat cgcataagct ccccgagata gtacgaatcg ggtacgaaac agtccgagta       720
     cgagactata tcccactccc acttcgatgc aaaaaatgcc tccgcttcgg tcatccaaca       780
     cccatatgca aaagtgtaga aacttgcatc aattgctctg aaacaaaaca cacaaacgac       840
     ggagaaaaat gcacaaacga aaaaaactgc ttaaattgcc gaaataaccc agaacttgac       900
     catcaacaca gcccaattga ccgcaaatgc cctacgttca taaaaaacca ggaattaaca       960
     gcaattaaaa ccacacaaaa agttgaccat aaaacggccc aacacatata tttcgaacgt      1020
     cacggcttcc aaacgaaaaa cacctacgcc aaaacactta caaacggcac aacccagagg      1080
     acaacaaaca ctccatcacc taatattcac acaaacacaa cccaatcaca acaacaaaat      1140
     ccgcaccaca cacccaaatc agcagcacaa aacacttcag ctaagacacc aacaactgaa      1200
     ccagccaaaa caaccttact atccaaccaa ccacaccaac accaccacca ccacagctac      1260
     gacaaactag aagacatgga taccgactac acacctacca gaaaaccatc tacgacatac      1320
     tcatcacaac tcacagaaga cctaaaaata aaaatcttcc ctaaagataa gtccaataac      1380
     ctatccataa accttaaagc atcaaaacta aaggccaaag cccacaaaaa caagcacact      1440
     aacaacagcg acagcgaatc catatagaac tctacacaaa accctaaccg ttaacactac      1500
     ctttaagtaa gttataagct ttaattttct cacaaatgtc cctaactata atccaatgga      1560
     atctaaaagg atatctaaac aactacagcc atctccttat tctaatcaaa aaatactccc      1620
     cccacataat ttccctccaa gaaacccata tacaatacac taataacatt ccaaccccaa      1680
     taaactacaa actattaaca aatattgcca ccaacagatt tgggggcgta cgactactag      1740
     tgcataagtc aatacaacac actgtcctca acataacaat cgatatagaa gcaatagcca      1800
     taaatataga atctaaactt aaattaaaca tattttccac atacatttct ccgaccaaaa      1860
     acataactaa ccagacactc cataacacat ttaacataca acaaacaccc tctctaatta      1920
     cgggagattt taatggatgg cacccatcct ggggctcccc aacaacaaat aaacgaggaa      1980
     aaataactca tagattcatt gacaacatgc accttatcct gttaaacgac aaatctccca      2040
     cacacttttc aacacacaat acatacacac acatagacct cacactctgc tctccaatcc      2100
     tagcccccca cgccaagtgg aaaatactaa acgatcttca cggtagcgac catttcccta      2160
     ttatcacaac actattccca acaaccaatc cacaaaaatt ctacagaccc ttttttaaac      2220
     tcaaagaagc caactgggaa cagttcaacg ctcttaccca ccaaaccaac aagaaatacc      2280
     ccacctccca caacgtaaac aaagaagccg ctctaatcaa tagaatcatc ctttatagcg      2340
     caaacctctc catcccacaa acctcaccta acacacatcc atacagggtt ccatggtgga      2400
     ataaacacct cgaccaatta cgtaaagaaa aacaacttgc ctggaaaaaa ttaaaccgca      2460
     caattactgt tgacaacatt ctagactata gacgcaaaaa cgcaatattt agatacgaac      2520
     taaaaaagag gaaaaaagaa gcttccagct ctttcacctc aaccatccat cccactactc      2580
     cctcatccaa aatatgggcc aatataagac gcttctgcgg acttaaccca gcaaaacaaa      2640
     ttcatgccat cacaaaccca gtaaataacg agactacatt ggctagcaac gaaattgcta      2700
     acatattcgc acaacatttc tctgacctct ccggcgactg gaacttctca gaggagttcc      2760
     ggaacaataa atatagaaat aacatacatc tctacacccc ctctccaata gcccaaacca      2820
     tagaagagaa cataacgtat ctagaactta gctcagcact acaaacatta aaaggatgtg      2880
     ctccaggact aaatagaatc tcgtatcaaa tgatcaaaaa tagctcccac acaacaaaaa      2940
     accgaataac gaaactattt aatgaaatat tcaatagcca catacctcaa gcctacaaaa      3000
     caagcctaat catcccaatc cttaagccaa acaccgacaa aacgaaaact tcctcatacc      3060
     gacccatctc cctcaactgc tgtatagcaa agatacttga taaaataatt gcgaaaagac      3120
     tctggtggct agtgacatat aacaacctaa ttaacgacaa acaattcggg ttcaaaaaag      3180
     gcaaatcgac ttcggactgt ctactctatg tagactatct cataacgaag tcaaaaatgc      3240
     acacctccct cgtcactctt gatttttcaa gagccttcga tcgagtaggt gtgcactcca      3300
     taatccagca attgcaggaa tggaaaacgg gtcccaaaat aataaaatac attaaaaact      3360
     tcatgagcaa cagaaaaata actgtccgcg tcggtccgca tacatcaagc ccgttacccc      3420
     tattcaacgg aatcccccaa ggttcaccca tatccgtaat acttttcctc atagcattca      3480
     acaaattatc caacatcata tccctacata aagaaattaa attcaacgca tatgccgacg      3540
     acttcttcct tataataaat ttcaacaaaa acacaaatac aaatttcaac ttagacaatc      3600
     tattcgacga tatagaaaat tggtgctcct actcaggggc atcgctttcc ctatccaaat      3660
     gtcaacacct ccacatatgc agaaaacgtc actgcacatg caagataagc tgcaacaact      3720
     tccaaattcc tagcgttacg tccttaaaaa ttctaggaat aaccttaaac aacaaataca      3780
     aatggaacac acacataaac ctacttctac ccaaactaca caacaagcta aatataataa      3840
     aatgcctatc tagtcttaaa tttaactgca acacgcatac actacttaat gtcgcaaaag      3900
     caacaattat agccaaacta gagtatggtt tgtttctgta cggccatgct cccaaaagca      3960
     ttttaaacaa aataaaaaca ccgtttaact ccgctatccg tctagctctc ggcgcatatc      4020
     gctctacccc aataaataac ttactttacg aatcgaatac tcccccctta gaaatgaaac      4080
     gagaccttca aatagccaaa ctatcccaaa acctaatcct ctccaaaaac acaccaatac      4140
     ataagttctt aaagcctaaa aaagctaata agaaaaaaac atcaacaata gaccgaacaa      4200
     tcaaacttag cctagaactt aatctaccct acaaaccaat aaaactccat aaaaacaaac      4260
     caccatggac cctccccaat ctaatagaca cgtcacttag aatccataag aaagaacaaa      4320
     catctccaga ccaatacaga aaattatacg aacacacaaa gaataacctc aaaacacaca      4380
     atttcatatt cactgacggt tcaaaaatta attacacaat atcattcgcc attacaacgg      4440
     agacagacgt cttgaaatac ggcatactgc ccccatattc atccgtcctc acctccgaaa      4500
     caatcgccat cctagaagca atagaactta ctaaaaaccg aagaggcaaa tttattatct      4560
     gctccgactc cctatcagca gtagattcaa ttcaaaacac aaataataac agcttttacc      4620
     caagcagaat acgatcgcta ataacgcaac acgcacctaa aattaaaata atgtggattc      4680
     ctggccattc aggaataaaa ggaaatgaat tagccgatca agctgcaaaa tcagcaagca      4740
     gtatgccact tatcctcacc ccaaacataa ataccacaga tataaaaaaa caccttaaag      4800
     ccgaccttgc gacaaaacag aaagaacaca taataaactg cagtccatgg taccaatcta      4860
     ttaacacgaa cacctcacac ccatgcgatt accttaaaca atcccaccca aattggacca      4920
     gactcgacca aataaaaata atacgacttc gactaggaca cacaaacata acccaccaac      4980
     actacctaaa tcccaattca ataccaactt gcccgttttg ccaaggtgat atttctttaa      5040
     accacatatt taactcatgc ccatccctcc tacaaaccaa gcaagatata tttaacaaca      5100
     ccaaccctct agaccttctt agcaaaccca atccagataa catacaaaaa ctcatacttt      5160
     tcctcaaaaa aactaaatta taccacaaaa tctaaaaaca aaacaggcat ttgtacataa      5220
     caagccagca attagttacc aaattagata ttaactaaat taagatataa taacattgta      5280
     aataaatata gctgtaagcc ccgtagctaa tgctatacta tctaagttag tctagttttg      5340
     taaactattc tatctatcat aataataata ataa                                  5374
//
ID   I_Ele10     repbase;    DNA;    INV; 6960 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele10.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6960
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6960
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           654..2231
FT                 /product="I_Ele10_1p"
FT                 /translation="MVTGPGGPPPWGEAPQLDGAISRRVAGSFSRATLPAF
FT                 MDRDGMYGDLHVLRLQGVNKNVLPHAPFMIRKSIQAHLGANIEGAYPEANG
FT                 NSYALKVRNVRHFEKLLMMTKLSDGTPIEIIEHPALNTTRCVVSCRDVIDE
FT                 SEQKIAEELKDQGVKEVRRITRKSGETRINTSTLIISLRGTNRPEFLDFGY
FT                 IRCRTRPYYPSPMQCFNCWAFGHTKSRCKIEKGICGTCSGDHPFIADKPCT
FT                 EAKYCSKCDTTQHAIRERSCPAYRKENDIQRIKIDQDVPYPEARRIYEESN
FT                 DPKTYAKITATGTSSDFLNLNQKIDELMEMVKTRDRRIEQLESALNGQNTS
FT                 TSNLDGNPPAVDCIPSXFQAMLDKQEAMFNRVIKNLIAANIEMQKEVQHLK
FT                 SSINTXTSIAHNALTQEDSVIEFATPIESALSKTLTPEKQQPNDDPLDIYS
FT                 DDSHPLDNIPSSSKHMGTPRPPVSPMIRKKETSSLTKSHPLTPKRPYSKAN
FT                 SPDKLQDSVNASKVQRQSSLTRKNVSKNSK"
FT   CDS           2285..6625
FT                 /product="I_Ele10_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTPQPTNEDNCLDSTSSSRGAVGPEAKPLPEPSGRLL
FT                 HSNSKLDEENLKKNSASSSRGAGRPKARTQSEQPGRLRHSTDEDPAIAPGS
FT                 WGTDNADVLPTPVLADNPQRRGEAEGGTDKGENTYSPQDVEGIKTVMPLDL
FT                 GTHKGGNPCPPKDSVGVKNHQPTLPEHSTSTDEINTFFPTVGTSLPLVGGR
FT                 TPPATGLALSCSAHSSSPPASSTQTSEANRFCTQSNVSSSFTGNTNFPTPS
FT                 LPRPTNFILQWNINGFLNNLGDLELLTQTSPPWCLALQEVNKVTAEQLNRT
FT                 LRGQYEWTIKKGNNFRHSVAIGVLRTIPFEFLHLRSDVPAVGVRLQNPLNI
FT                 SVINVYFPCGALPNLHEQVKSLLEAAPGPVICLGDMNAHHPAWGGNRADRR
FT                 GTTLLDLFEELDLVVLNDGSDTFYNGHYSSAIDVTAVSRSTLPKLQWHTIT
FT                 DLHGSDHHPIQITIAASSPITTRRPRWLYERADWEIYNASVREALRAADPT
FT                 SIPDFNELIHKAAEAAVPRSSNKPGRKALRWWTDDTRKAVKARRKALRAAK
FT                 RLPQGHPEKENMLNRYRMLHIQCRQTIRNAKRTSWEEFLEGMNASQTSAEL
FT                 WNRVNALSGKRNLAPLSIQLPDKLVTDPVAVADTLGQYFSSLSAIDSYDDL
FT                 FKRRYNPSTDSVLNFPVPYDLRGAAINEPFSLQELKFALGRSKGKSAGSDG
FT                 IGYPLLKNLPFPGKIKLLEILNQIWLSDTFPAEWQESLVVPIPKANNPTRG
FT                 PSSFRPIALTSCLSKIMERMVNRRLKQQLEAAGHLDRRQHAFRAGYGTNSY
FT                 FASLGDILHNAHSEGLHTELISLDLSKAFNRTWTPLVLKQLVEWGMSGHVI
FT                 HFIKNFLSNRTFRVLIGDNTSKLFAEETGVPQGSVIAVTLFLVAMNGVFRN
FT                 LPSGIYIFVYADDILLVISGRTPVRTRIKAQAAVNAVVKWTSSVGFTLSAP
FT                 KSIRCHICNTGHRITGSPITIQGQPIPLKKTVKTLGIIIDRGLTFKQHFES
FT                 VKTNCRTRLNLVRTISRPHRSNNRAIRFRVAHAIIDSRLVYGLELTCIATG
FT                 RLLQTLAPVYNTYVRIISGQLPCTPADAACTEAGILPFRHVISATICKKAA
FT                 AFAEKTSGNERIFLLSEGCRILRTVANVDLPPVAKIHWYGDKSWQSGKPKI
FT                 DSTIKDRFRAGDNSITLRASVIEWLRNNYPNHLHRYTDGSLSNRGVGIGIY
FT                 GLDVSRSLSLAPLCSIFSAEAAAVFIAATTPAEQPILILTDSASVVSALQS
FT                 ESPAHPWLQGILRFAPPDTTFAWIPGHCGVPGNTAADRLAGAGYASTRYTN
FT                 KVPLQDIKRWITKSVNAQWATEWSQQSTCHLRKIKQDTQPWTDVISLKEQR
FT                 IISRLRTGYTRLSHNMEGLPFHRICTTCNTHNKVEHFLCVCPQYEFHRRNH
FT                 GLTGSIRENLCNDTTTLNTVICFLKDSGLYSQI"
XX
SQ   Sequence 6960 BP; 1913 A; 1866 C; 1512 G; 1665 T; 4 other;
     cagtttgcaa cttgctatgg ttgaatgtag atgcgttgat cgctatctcc aactgtgaag        60
     ttgtttatcc ttttattaac caaaaccggt cgatcaacaa acagttttaa attgttttta       120
     ctttgttttc cgttgttata ttcgtctctt cgtacatacg gaataaccgt aatcaatcgc       180
     ggctgtgttc ctgttttttt tctataccat ttgttcgttt tcgcgcggtt taacaagcga       240
     ttgacattca gttttattcc aagccccttt gtcccaaagc aacttctggg caagggggta       300
     gtgtggtttt taatctgtgg cgattttctc gctttcgaag atagtggtgc tgccaaattt       360
     caacacgtga aagattattg gtggcgaaca aatccatctc tctgctcaca gtgcaattgt       420
     gaggtcgtaa tccgggtcgt gggagtgatt ttgtgagact attacgatcc ctccccaaag       480
     gggaggttga aacgcgaggg cgttcgcaac ctttcctgac atcgtaccac agacgcgttt       540
     ttgaagaaag ctttagtggc agaagagctg agaagaaacc gagtgaacag tgaaactgct       600
     attgcgaaat tgttacagca gtttatttag tgaacaatta gtgaattgcc tttatggtaa       660
     cggggccggg gggtccccca ccttgggggg aggctcccca actggatggt gcgatctcaa       720
     gacgagtcgc tggtagcttt tcacgagcta cactgccagc cttcatggac agagatggga       780
     tgtacggaga tctacacgtc ctccgacttc aaggcgtgaa taaaaatgtt ctgccacacg       840
     cacctttcat gattcgaaag tctatacaag ctcatcttgg tgcaaacatt gaaggagcct       900
     atcctgaggc caacggaaac agctacgcgc taaaggtgag gaatgtccgc cacttcgaaa       960
     agctgctaat gatgaccaaa ctctctgacg gtactcccat tgagattatc gagcaccctg      1020
     cactgaacac aacgcgttgt gtggtcagtt gtcgtgatgt gatcgatgaa tcagagcaaa      1080
     aaatcgcaga ggaacttaaa gaccaaggag taaaggaagt gaggcgaatc acccgaaaat      1140
     ccggtgaaac tcggatcaac acatcgaccc ttattatctc tttgagggga accaacagac      1200
     cggagttttt agacttcggc tacattcgct gtagaacacg tccctattac ccgtcgccca      1260
     tgcagtgttt taactgctgg gctttcgggc atacgaagtc acgctgtaaa attgaaaagg      1320
     gaatctgtgg tacatgctct ggagatcacc cttttatcgc cgataagccc tgcaccgaag      1380
     cgaaatactg cagtaaatgt gatactaccc agcacgcaat cagagagcgg tcctgtcctg      1440
     cttatagaaa agaaaacgac atccagcgta tcaaaatcga tcaagatgtg ccctaccccg      1500
     aagctaggcg tatctacgag gagtcaaatg atccaaaaac gtacgcaaaa ataacagcaa      1560
     caggaactag cagtgacttt ctaaacctca atcagaagat cgacgagctt atggagatgg      1620
     taaaaacgcg cgaccgacgc attgaacagc ttgagagcgc tcttaatggc caaaatacat      1680
     caacttcaaa cctggacgga aatcccccag cagtcgattg tatcccctcc ascttccaag      1740
     caatgttaga taaacaagaa gcgatgttta atcgagttat taagaatttg atagcagcca      1800
     acatagaaat gcaaaaagaa gtacaacact taaaaagctc sattaatacg cstaccagca      1860
     ttgcacacaa cgcgctcacs caagaagatt ctgttatcga gtttgcaacc ccaatcgaaa      1920
     gcgctctttc caaaaccctc acacccgaga aacaacagcc taatgatgat ccgctagaca      1980
     tttatagcga cgattctcat cctctcgaca acattccgag ctcttccaaa cacatgggaa      2040
     caccaagacc ccctgtttct cccatgatcc gcaagaagga gacgtcaagc cttacaaaaa      2100
     gccatcctct cactcctaaa cgaccttaca gtaaagcaaa ttctcccgat aagctgcagg      2160
     acagcgtgaa cgcgtcgaag gtacaaaggc agtcctctct tactcggaaa aacgttagca      2220
     aaaactctaa atagccttcc catcaaaaca ccatcaacca ggcgaaacac cctccaccct      2280
     caacatgact ccacaaccaa ccaacgaaga caattgtcta gactctacct cgagtagtcg      2340
     gggcgccgtt ggaccggaag ccaaacccct accggaacct tcgggtcgac tcctgcactc      2400
     gaacagtaag ttagatgaag aaaatctgaa gaaaaacagc gcctcgagca gtcggggcgc      2460
     cggcagaccg aaagcccgga cccaatcgga acagccgggt cgactccgac actcgacgga      2520
     cgaagatcca gcgatagccc ctggtagctg gggcaccgac aatgcggacg ttcttcccac      2580
     accggtattg gcggacaacc ctcagcgccg gggggaagct gaaggaggga cggacaaggg      2640
     tgagaacacc tattcccctc aggacgtcga gggaatcaag accgttatgc cgttagatct      2700
     cgggacgcac aaagggggca acccctgtcc cccgaaggac agcgtgggag tcaagaacca      2760
     tcagccaact ttacccgagc atagtacaag tacggacgaa ataaacacct tttttcctac      2820
     cgtcgggaca tccttgccct tggtgggtgg acgaactcca cctgccactg gtctggctct      2880
     gtcttgttcg gctcattcat caagtccccc agcttctagt acgcaaacca gtgaggccaa      2940
     ccgtttttgt acacagagta acgtgtcttc ttctttcacc ggcaacacca attttcccac      3000
     accgtctctt ccaaggccca ccaacttcat ccttcaatgg aacatcaatg gtttcctaaa      3060
     caacttgggt gacctcgaac ttctcacgca gaccagtccg ccctggtgtc tggccctcca      3120
     agaagttaac aaagtcactg cagagcaatt aaatcggacc ctgcgaggtc aatacgaatg      3180
     gacaatcaaa aaaggaaaca attttcgaca ctcagtcgcc attggggtcc tacgtaccat      3240
     cccatttgaa ttcctacatc tcagaagcga tgtccctgcc gtgggtgttc gactgcaaaa      3300
     tccgctgaac atatccgtaa taaacgtata ttttccatgt ggggcgctcc cgaatctcca      3360
     cgaacaagtc aaaagcctgt tagaagccgc tcccgggccc gtgatatgcc tgggggatat      3420
     gaacgctcat caccctgctt ggggaggaaa tcgtgcagac cgtagaggga ctactctcct      3480
     cgatcttttc gaagaactcg acttagtagt actcaacgat ggctccgaca ctttctacaa      3540
     cggtcactac tctagcgcca tcgacgtcac cgcagttagt cgctcaactc tgcctaagct      3600
     ccagtggcac accattactg atcttcacgg aagtgatcat catccgatac agatcaccat      3660
     agctgctagc tctccgatca ctactcgtcg tcctagatgg ttgtatgaac gtgctgactg      3720
     ggagatatat aatgcttctg ttcgtgaagc acttcgggct gccgatccca ccagtatccc      3780
     ggactttaac gaactcatcc acaaagcagc tgaggctgca gtacccagat cgagtaacaa      3840
     gcccggacga aaagcgcttc gttggtggac ggatgacacg cgaaaagctg tgaaggctag      3900
     aagaaaagcg cttcgtgctg caaagcggct gccacaaggc caccctgaga aagaaaacat      3960
     gcttaatcgc tatcgaatgt tgcacatcca gtgcagacaa actatcagga acgctaaacg      4020
     cactagttgg gaagagtttc tggaaggtat gaacgcctca caaacttccg cggaactttg      4080
     gaaccgggta aacgcactga gtggcaaaag aaacttagct ccattatcaa tacaattgcc      4140
     ggataaatta gtcaccgatc ccgttgcagt cgccgatacc cttgggcaat atttctcaag      4200
     tctctcggct attgatagct acgacgacct ctttaagcgc cgttacaatc cctcgacaga      4260
     ctctgttctt aatttccccg ttccatacga tttaagaggt gcagccatca acgaaccctt      4320
     ctcactccaa gaattaaaat tcgctcttgg ccgcagtaaa ggcaaatcag ctggatctga      4380
     tggcattgga tatccgctgc taaaaaatct gccgttcccc ggaaaaatca aactcctgga      4440
     aattctcaac caaatttggc tgtcggacac ttttccagcc gaatggcaag aaagcctcgt      4500
     cgtccctata cccaaagcca acaatccaac tcgtggacca tcaagcttcc ggccgattgc      4560
     gctcactagc tgtctctcta agattatgga acgaatggtc aatagacggc tcaaacaaca      4620
     actggaggct gcaggccatc ttgaccgccg acaacacgcc tttagggctg gatacgggac      4680
     taacagctac tttgcttctc tgggtgatat ccttcataac gcacattccg aagggctgca      4740
     cactgagctg atctccttgg acctttccaa agccttcaac cgcacctgga ctcctctggt      4800
     actcaaacag ctagtggaat gggggatgtc cgggcacgtt atccacttca tcaaaaactt      4860
     tttatccaat cgcactttcc gtgtactgat tggtgacaac acatccaagc ttttcgccga      4920
     agagaccggc gtaccccaag gatccgttat tgcagtcacc ctttttcttg tggcgatgaa      4980
     tggtgttttc cgaaatctcc caagtgggat ttacattttc gtatacgcgg atgatatctt      5040
     gctggtaatt tcaggccgca cacccgttcg caccagaata aaagctcaag ctgcagtcaa      5100
     cgccgtcgtc aaatggacct cgtcggtggg gtttactctg tcggcaccca aaagcattcg      5160
     ctgtcatatt tgcaacactg gacatcgaat taccggttcc cccatcacca ttcaaggtca      5220
     acccattccg ctgaaaaaga ccgtcaaaac ccttggaatc ataatcgata gagggcttac      5280
     attcaaacaa cattttgagt ctgtgaaaac aaattgtcgt actcggttaa acctagtgcg      5340
     tacaatctct cgtccacatc gatctaacaa tcgggccata cgttttcgag ttgctcacgc      5400
     aataatcgac agccgtctag tctacggtct ggaattaacg tgtatcgcta ctggaaggct      5460
     gctccaaacc ctcgcaccag tgtacaatac ctacgttcgc atcatctcgg gacagttacc      5520
     gtgtactccg gcggacgccg catgtactga agctggtata cttcctttcc gccatgttat      5580
     atccgcaact atctgcaaga aggccgctgc tttcgccgag aaaacctccg gaaatgaaag      5640
     gatcttcctc ctctccgagg ggtgcagaat ccttcgtacg gtagccaacg tggatctccc      5700
     tccagtggcc aagattcatt ggtacggaga caagagttgg cagtcaggaa aaccaaaaat      5760
     cgatagtaca atcaaggacc gttttcgtgc cggtgacaac tccatcacac ttcgagcgtc      5820
     tgtcattgaa tggctccgta ataactaccc aaaccacctc cacagataca ctgatggctc      5880
     cctatcgaac cgtggcgtgg gaatcggcat ctatggactt gacgtttcga gaagccttag      5940
     tctcgcccca ctatgttcca tcttttccgc cgaagccgca gccgttttta tcgcggctac      6000
     tactcctgct gaacaaccca tcctaatact tactgactca gctagtgtag tatcagctct      6060
     tcagtccgag tcccccgccc atccatggct tcaaggtatt ttacggtttg ccccacctga      6120
     caccaccttt gcgtggatcc ctggacattg tggtgtacct ggaaacacag ctgctgatcg      6180
     cctcgctggt gcaggatacg cgtcaacaag gtatacaaac aaggttcctc ttcaggacat      6240
     caaaagatgg ataaccaagt ccgtcaacgc gcagtgggca accgaatggt cccagcagag      6300
     cacttgtcat ctacgcaaga tcaaacaaga tacccaacca tggaccgacg ttatttcatt      6360
     aaaagaacag cggatcatct cccgactgcg gactggatac acccgtttat cgcacaacat      6420
     ggaaggcttg cctttccaca gaatttgcac cacttgcaat acacacaaca aggtggaaca      6480
     tttcctatgc gtctgccctc agtacgaatt tcatcgtaga aaccatggac taacggggag      6540
     cattcgggaa aacctatgca acgatacgac tacactcaac actgtcatct gtttcctgaa      6600
     agattcagga ctatactccc aaatataacc ttacctctac tttttcccgc agtcggggta      6660
     tctctgccgg tggagggttt cgaccttcct ccgggagagc tctaccttgt tcttgcctcc      6720
     cctccattcc cggtttagtg tgaaacaatt atgtttagtt tgaacctgtt gctggcgact      6780
     aattttatct caccgaaaac gtgtttttca aattttgtga tagtttattt gtattttgat      6840
     atgctgcttg aaagcctgta aaactcctta ttgaaagcag cctttctggc gcttttctga      6900
     caaatggtga tgaactagcc gtatgcgcta aaaatcacct taataaagaa caaaaaaaaa      6960
//
ID   I_Ele11     repbase;    DNA;    INV; 6046 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele11.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6046
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6046
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 14 sequences with >96% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           43..849
FT                 /product="I_Ele11_1p"
FT                 /translation="MQCFNCWLFGHTKMRCQAEKAACGTCSGDHXIAENRE
FT                 CSNNTFCKTCNXEDHKISSRACPQWQXENAIQKVKVDQGIPYPAARRIVEQ
FT                 NRNGRSFXAVVGPATTESNQQINGRADQHASALAAKDAEIAELRXALAIRS
FT                 APLAVANNEIEQLKSIVAEQAKQIQLLTEQVSVFLKAVMPAASFPNLTEPX
FT                 KTATXAVLPVSNNTNTASSASSTISDXPINTPSSNPPSNKDIPGFFTTSSE
FT                 KSSFTTNTKTAPYQSFPPKRKRNCKRHS"
FT   CDS           1115..5671
FT                 /product="I_Ele11_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MPQPASPDRLRHRAQNNSPSTSLDSQGANVPDVLPQP
FT                 ESLGRLRRLEGNMDEELLFHFVHCPARTPGSQSPVSAAVSHSGTGGHSLAL
FT                 GEDLEEGNQASEPTSLDDEGSEGSQAIGTRRVLPATPMDYAGSQVASTSSV
FT                 EDLGHPGNPNPGGKSHXAVVSSSDALLAPXSTVVAFTLDDVGSQGLQALGT
FT                 HRALPVTPKDNAGSEATSKHRSIQALIPGNPTHRLSPLATPFFPAVGTSLH
FT                 LVGPSSGPAICRALSCSCTESDTEIPSDRHSTAIESPPLIVSSPSAYTVGR
FT                 NVVHPCTNTTPNQTLSHPTPALPEPARFCLQWNMNGFFNNLADLEILTSSD
FT                 PPWILALQEVNRVTLEQLNRSLGGRYVWNLKRGSNFRHSVALGVLKSIPSA
FT                 FFNIDSQLPAIGVKVQGSTTMSVACVYLPCGNIPNLRGEVEKIIQQLPEPR
FT                 MVVGDLNAHHPAWGGSRSDSRGNTLLNLFEDSDLTILNDGSPTFFNSRYST
FT                 AIDVTAVTRSEIGRFSWCVNSDPHGSDHHPLQISLAVEAPVTTRRPRWLYD
FT                 QADWTAYNNSISVSLRSRHPSNMVEFTAVLTEAAAVSIPKTSSKPGRKALR
FT                 WWSPEIKKVIKARRKALRAMKRMAPDHPNRDVIVDRYHIARNTCRQAIRDA
FT                 KRACWEEFLDSINATQSTADLWAKVNALNGKRIVTPPTLDIDGNSTADPEI
FT                 IADGLGKYFANLAAFGTYDPVFVRQTGATANDINSFTVPEDNAQLPINQPF
FT                 SFRELQYALSRSRGKSAGPDDVGYPLVKNLEGHGKLILLELINQLWTDDSY
FT                 PPEWRESFVVPIAKPSNQARDPANYRPIALTCCLSKVVERMVNRRLTHHLQ
FT                 QRGLLDHRQHAFRPGYGTNTYFAALGEALQEAKSLEHHTEIVSLDISKAFN
FT                 RVWAPLVLEKLASWGFTGHVLHFVRNFLTNRTFRVVIGNTKSDSFREETGV
FT                 PQGSVISVTLFLIMMNGVFQNLPNGVKIFVYADDIVIVVSGPTIAATRRKA
FT                 QAAVTRVAKWASSVGFTMSASKSVRCHVCSSGHRVSGPPININNQAIPIRK
FT                 TAKILGVTIDRGLTFKPHFEGVRANCRSRLNLLRSLSRPHRSNNRNIRFRV
FT                 ATAIIDSRLLYGLEITYLAMNNLIDALSPIYNRYIRIVSGLLPSTPADAAC
FT                 VEAGLLPFRFLVIITLCTKAAAIAERTAGNRRTRLMEEADHQLENATGSRL
FT                 PPIAKTHWCGERDWRSSNLKFDDRIKQSFKAGDSSIRLRKTVAEILRKDYS
FT                 AHQRRYTDGSLSVRGVGIGITDENLATSLSLPGQCSIFSAEAAAILYAATV
FT                 PTTSPIVIITDSASCFTALQSETPRHPWIQGIIKKAPCDVTLMWVPGHSGV
FT                 PGNATADFLAGTGPSGPRYSTRVPLADIRRWVKSTIRQTWQAEWANSRGAY
FT                 LRKIKRSTDAWTDLNSMKDQTIISRLRSGHTRMSHNYGGNPFHRSCEICDT
FT                 GNTVEHFICNCPAFDSPRQMYGISGSIREALQDDLSSMAALISFIKDAGLY
FT                 FKI"
XX
SQ   Sequence 6046 BP; 1557 A; 1767 C; 1343 G; 1358 T; 21 other;
     gggtwcatwc gctgcaggac tcggccttat tatccgagtc saatgcagtg cttcaactgt        60
     tggctcttcg gccacacaaa aatgcgctgc caggccgaaa aagctgcctg tgggacttgt       120
     tcaggagatc acttkatcgc mgagaacagg gagtgtagca acaatacttt ctgcaaaact       180
     tgtaacagkg aggatcataa aatatcgagt cgtgcctgcc cccagtggca gtkcgagaat       240
     gcgattcaga aggttaaggt cgaccagggc atcccctacc ctgccgctcg cagaatagtt       300
     gagcagaacc gmaatggaag atctttckcc gctgtagttg gtcctgctac macggagtca       360
     aatcaacaaa tcaacggtag agcggatcaa catgcatccg cccttgccgc aaaagatgct       420
     gaaattgccg aacttcgagm agcgcttgct atccgctctg cwcccctggc agtagccaac       480
     aatgaaatcg aacagctaaa atccatcgtc gctgaacagg cgaaacaaat tcagttactt       540
     actgagcagg tttctgtttt tcttaaggct gtcatgcccg cggcaagctt tccaaacctt       600
     acagaaccca wtaaaactgc cacacmcgca gtactacctg tttccaacaa taccaacact       660
     gcatcctctg cktcatcaac matctcggat mttccgatta acaccccttc cagcaacccc       720
     ccatcgaata aagatatccc cggattcttc accacaagca gtgagaaatc tagcttcacc       780
     acaaacacca aaaccgcccc gtaccagagc ttccctccca agcggaagcg gaactgtaaa       840
     cgacatagct aaaacctctg gtaaacgccc aatcagctct gtctcacgaa cggaagcgct       900
     gttccaacag cacaaaaaaa ccaaaaagaa ggtgcccgaa ggtccaacga ccattcctaa       960
     gaaacggtaa gtccatcatc cctcttcctc tattttctca ccgccacccc atccacccaa      1020
     atctgacacc cccaacactg ccttccaccc cattatcgca agtggtagtc cacagtcaag      1080
     cactgatcgt ccgagcaccg gcgatctgga agccatgccc caaccagcat cgccggaccg      1140
     actccgacat cgtgctcaaa acaacagtcc atcaacctct ctcgatagtc agggcgccaa      1200
     cgtaccggac gttttacccc aaccggaatc gttgggtcga ctccggcgtc ttgaaggtaa      1260
     tatggatgaa gagctcctgt tccactttgt tcactgccca gctagaaccc ctggtagcca      1320
     gagccccgtc agtgcggccg tttcccactc cggaactggc ggacattctt tggcgctagg      1380
     ggaagacctg gaagagggaa accaggcttc cgagcctacc tccctggacg acgagggaag      1440
     tgaaggttca caagcaatcg ggacacggag ggttttgccc gccaccccaa tggactacgc      1500
     gggaagtcaa gtcgcatcta cctcctccgt agaggatctt gggcaccccg ggaaccccaa      1560
     cccgggtggt aagtcccacw ccgccgtcgt aagctcttct gatgctctct tagcaccccw      1620
     ctccaccgtg gtcgctttca ctctggacga cgtgggaagt caaggcctgc aagctctcgg      1680
     gacgcatcgg gctctacccg ttaccccgaa ggacaacgcg ggaagtgaag ctacctccaa      1740
     acacagatcc atccaagctc taattcccgg caacccaacc caccgattat cgccccttgc      1800
     aacccccttt tttcctgccg tcgggacatc cctgcatttg gtgggcccat cttccgggcc      1860
     tgccatctgt agagctctgt cttgttcgtg caccgagagc gataccgaaa taccatccga      1920
     tcgccattca actgcaatag aatctccgcc gctcattgta agctcaccct cagcatacac      1980
     cgttggtagg aatgtggtcc atccatgcac taacaccact cccaatcaaa ccctaagtca      2040
     tcccacccca gctttaccgg aaccagctag gttttgcctg cagtggaaca tgaacgggtt      2100
     ctttaacaat cttgcagacc ttgagatcct cacaagcagc gatccccctt ggatmctggc      2160
     cctccaagaa gtcaaccggg tcacactcga acaactgaac cgctcactcg gcggtagata      2220
     tgtatggaac cttaagcgcg gaagcaactt ccgccattcc gtcgccctcg gtgtacttaa      2280
     gtcgattccg tctgcctttt tcaatatcga ctctcaactt ccagctatcg gggtcaaagt      2340
     tcagggaagc acaacaatgt ctgtggcatg tgtataccta ccatgcggaa atattcctaa      2400
     cctgcggggc gaggtagaaa aaattattca acaactgccc gaacccagaa tggtcgttgg      2460
     tgacttaaac gcccaccatc cggcctgggg tggatcccgg tcagactcta ggggcaatac      2520
     cctactaaat ctcttcgaag atagtgatct tactatccta aacgatggtt ccccaacttt      2580
     cttcaatagt cgctattcga cagcaatcga tgttacggct gtcacccggt cggagatcgg      2640
     acggttcagc tggtgcgtca attcggatcc acatggtagc gatcaccatc ctcttcaaat      2700
     ctcgttagcc gtggaggctc ccgtcacaac caggcggccc cgctggctgt acgatcaggc      2760
     agattggact gcttataata acagcatcag tgtatcactt cgctctcgcc acccgagtaa      2820
     tatggtagaa ttcactgccg ttctcacgga agcggctgcc gtttcgattc cgaaaacaag      2880
     cagcaagcca ggacgaaaag ctcttcggtg gtggtctcca gaaatcaaaa aagtgatcaa      2940
     ggcacgtaga aaggctcttc gcgccatgaa gagaatggca cctgatcatc caaaccgaga      3000
     tgtaattgtt gatcggtatc acatcgcacg caacacttgt cggcaagcca tccgagacgc      3060
     caaacgagcc tgttgggagg agttcttgga tagcatcaac gcaacccaat caaccgctga      3120
     cctatgggcc aaggtcaacg ccctcaacgg aaaaagaatc gtcactcccc ccaccctcga      3180
     tattgatgga aacagtactg cggatccaga aatcattgcc gacggcctgg gaaagtattt      3240
     cgccaatctc gcagcctttg ggacgtatga tccggtcttc gtccgccaaa ccggtgcgac      3300
     tgccaacgac ataaacagct tcactgtacc tgaggacaat gcacagcttc ccattaatca      3360
     acctttctca tttagggagt tgcagtatgc tttgagtcgc agtaggggga aatccgcagg      3420
     cccagacgat gttggctacc cattggtgaa aaatcttgaa ggtcatggta agcttatcct      3480
     acttgagctg ataaatcagc tgtggactga tgactcctac ccgccggaat ggcgagagag      3540
     cttcgtcgtc ccaatcgcga aacccagcaa tcaagctcga gatccagcaa actatcgtcc      3600
     aatcgcactc acctgttgcc tctctaaggt agtagagcga atggtaaacc gtcggcttac      3660
     acatcatctc cagcaacgcg gcctgctgga tcaccggcag cacgcctttc ggcccggtta      3720
     cggtactaat acctacttcg cggccctcgg cgaggctctg caggaggcga aatcwttgga      3780
     gcaccatacc gaaatagttt ctttagatat atcaaaggct ttcaacaggg tttgggcacc      3840
     tctcgtcctg gaaaagttgg ccagctgggg tttcaccggc cacgttttgc acttcgtaag      3900
     aaacttcctc accaatcgta ccttcagggt ggtcatcgga aacaccaaat ccgattcatt      3960
     cagagaagag accggcgttc cgcaaggatc cgtcatatcg gtgactctgt tcctaataat      4020
     gatgaacggc gtcttccaaa accttccaaa cggcgtcaaa atattcgtct acgcggacga      4080
     catcgtaatt gtagtatctg gacctacaat cgcggctaca cgaaggaaag cccaagctgc      4140
     cgttaccaga gtagccaagt gggcgtcctc cgtcggcttc actatgtcgg cttctaaaag      4200
     tgtccgatgc catgtgtgct catccgggca cagggttagt gggcctccga ttaacatcaa      4260
     caaccaagcc atccccatcc gcaaaacggc aaaaatcctc ggtgtcacta tcgaccgagg      4320
     cctgaccttc aagccccact ttgaaggagt cagagccaac tgccgaagtc gtctaaattt      4380
     attgagatcc ttatcgagac ctcatcgcag caacaaccgg aatatccgat tccgtgtagc      4440
     cactgccatc atcgatagtc gcctgctgta cggattggaa atcacgtatc tggctatgaa      4500
     caacctcatc gacgcgctat ccccgatcta caaccgatac attcgaattg tctcggggct      4560
     tcttccttcc actccggctg acgctgcttg tgttgaagcc gggcttcttc cattccgctt      4620
     cctcgtcatt ataaccctct gcacgaaagc agccgctatt gccgagagga ccgcgggaaa      4680
     ccgcagaaca cgcctcatgg aagaagcaga ccaccagcta gaaaacgcca ccggttcgcg      4740
     tctcccacca attgccaaaa cgcactggtg tggcgaacga gactggcgca gctcaaacct      4800
     taaattcgac gacagaataa aacaaagttt taaggcaggt gattcatcca tccgattgcg      4860
     aaaaaccgtc gccgagatcc ttcggaaaga ctattcagca caccagcgac gatacactga      4920
     cggatccctc tccgtacgag gtgttgggat aggtataaca gatgaaaatc tagcaaccag      4980
     cctcagcctc cccggacagt gctctatctt ctccgccgaa gcagcggcta ttctatatgc      5040
     cgccactgta cctactacca gccctatagt catcatcacc gactcagcga gctgcttcac      5100
     agcgctccaa tctgaaaccc ctcgtcaccc gtggatccag gggataataa aaaaggcccc      5160
     atgcgacgtt accctaatgt gggttccagg acatagtggt gttcctggta acgcaaccgc      5220
     agatttccta gcaggaaccg gcccttctgg cccccgttac agcactaggg taccccttgc      5280
     tgatattcga aggtgggtga aatcgaccat acgccagaca tggcaagcag aatgggcgaa      5340
     ctcacgaggg gcctacctac gaaaaattaa acgaagcacc gacgcttgga cagacctgaa      5400
     ctcgatgaag gaccaaacaa taatctcccg gttgagatcc ggccacacaa ggatgtccca      5460
     caattacgga ggaaaccctt tccatcggtc ctgcgagatc tgtgacacgg gtaacaccgt      5520
     tgagcatttc atctgcaact gcccagcctt tgatagcccc agacagatgt atgggatttc      5580
     tggtagcata cgagaagccc tgcaggacga cctctcttca atggcggcgc ttatctcctt      5640
     cattaaggac gccggattat actttaagat ttagatatat cgtccatgta caattcacgt      5700
     gatcgtaacc cactagctgt tgttgtccca tcataagcat gttctgcaat agttttaaac      5760
     ttgtccgtcc atttgttcgc tttgaatgtt aggcacataa gaagtggctc cttattgtac      5820
     ccccagcttt atgttgtgtt aatttgtggc tttttgtcaa ttagttttat ctaaatctca      5880
     ctcgatgtaa taactatgtg tccctagact agttacaata tttttgttgt ttttctcagg      5940
     ctggcccttc aggcttgtcc tgattttttt taacctgact ggggatgaac ctgcctacgg      6000
     cagaaaatcc cttcaataaa aagtaattca attcaattca attcaa                     6046
//
ID   I_Ele13     repbase;    DNA;    INV; 6839 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele13.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6839
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6839
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           302..1999
FT                 /product="I_Ele13_1p"
FT                 /translation="MMPGSGSAPHRGDPGGPGGGGNSPRNMFQGTYAGQRL
FT                 PTYMDKEGIAGSLQVLKMQAVGENTSLPNDPFLLRLSVEKCVGGPIDGAFK
FT                 ENRGISYALKVRSNVQFQKLLKMSRLIDGTEVMITEHPQLNTTKCVVSNYD
FT                 SVGLSDAYLKEQLASQGVRDIRRIQKRNSAGVPENTPTMILSIVGTVIPEH
FT                 IDFGWTRCKTRSFYPSPMLCYHCWEYGHTRKRCQETHQICGTCSQVHPEDN
FT                 ILNGSNSRNAEDDEFSNKKPHCTNPPFCKNCKSNGHAVSSRKCPVYSKETA
FT                 IQHIRIDMGYSYPQARREYEAQQGATGNSGSYARIANLSKDKEIADMSDVV
FT                 KKLQDDSKRKDEKIAELEKIVQNRSVGKRLDQVQKNGTIEDLTRRVIQLTE
FT                 AVEQLQKTVQEKDREISRLRQYETLYTHMEPSQSITTVSQSLVPTPDCASI
FT                 PATPAAPYDLRDPRIRSRCSKWIAENNSSENGPAQNTKNNRRKQKHRKQYE
FT                 SNKDRGFSSEESMKSFHSKNSMQTTTSVGTSASNPTKRNHPTTDSDSDSNG
FT                 RTSKSKRSGVDGTDTIEIE"
FT   CDS           2065..6567
FT                 /product="I_Ele13_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="TIIFSTQKKPVKKKNRELTEPTSPLSTTNTTRTRRAA
FT                 VKAPDSRGPVSADITPQPELADNLRHPRVILAYGTHKGIQTRSPFSPDTSQ
FT                 DRKAPGGVTGRGTHKSSNTCTPEDSEGTQFNDGHQNRHFHVYSPLHNVEVK
FT                 PVLRRYDLRTRIKPPRNRLDTPSSSKVFITSRLPPLGPEVCNADLYDQLHR
FT                 VRFGASASIKAGPSNLSCVSASRKKFKNVNPLDPPSDSTGTSNTATVSQSR
FT                 FTCSGSVSRSAIVSEKSDCSSPPPENSEPERASGVTSSDCNHLRKTSNIGN
FT                 SEQHTWILQWNMNGFYNNLPDLQKIVVDKDPSIIALQEIHKATTESMDNTL
FT                 GRKYKWITKINRNIYHSVGIGIAAELPFSNITLDTNLPIIAVRLSWPFPVT
FT                 VVSAYIPNQNIPDLENQVKQLIGKLPEPIILLGDSNAHHQAWGSRHTDARG
FT                 AILLEIAGQNGLTILNDGSPTFMRGQHESAIDISLASMTIMNRISWSAECD
FT                 PMGSDHVPITILLNTTPPNTSRRPRWIYDKADWSGFQSSINSSFKNSEPKS
FT                 ITEFTEAIHEAAKTNIPKTSPNPGRRALRWWSEDIKKAVKARRKALRAAKR
FT                 LPAEHPDKEKAVLKLRTARNECRQIVREAKERSWAEFLDSINDSQSSAELW
FT                 GKVNAIQGKKTKNGIALKIKNQTVRDPAIIADALADHFFNLSSLQRYPEAF
FT                 LKRHSGAKTAIADFVIPSGTDESYNQTFSIQELQFVLQKCCGKSSGPDEIG
FT                 YHMIKNLPMHCKAILLEMINKEWTSRTFPESWRHSLIVPIPKSTGPSSDPR
FT                 NYRPIALTSCMSKIMERMVNRRLMEYLDINGKLDYRQHAFRSGLGTGTYFA
FT                 TLGQTLDDAISCGEHIEMASLDLAKAYNRAWTPSVLEKLAQWGVTGNLLAF
FT                 LKNFLTNRTFQVIIGNHRSKPVAEETGVPQGSVIAVTLFLVAMNGVFDVLP
FT                 KGIFIYVYADDILLVVTGKHPKAIRRKLQAAVNAVVKWTDLVGFDISPEKC
FT                 VRMHICAQKHRPPQKPITVKGKPIPTKKFAKILGVTFDRNLSFRPHFEAIK
FT                 KSCANRMNLLKILSNKRTRSDRRSRLRIADAIICSRLLYGVDITCRASDEL
FT                 VSILSPTYHNAIRTISGLLPSTPAKAACVEAGVMPFIYKVATTIGTKAVSF
FT                 LERTKGDGSPAFLATEADRILNSVAGVTLPSVAELHRIGPRSWRASEPLVD
FT                 NFIKNRLKKGSNPTIAKSLFNERITTKYANTEIMYTDGSKLSNKVGIGIAG
FT                 KHIEDHFSLPDSVSVFSAEAAAIMQAVSHRSTKPKLIVTDSASCILSIRSQ
FT                 TSRHPWIQVTQSLLETRGTPKVSFMWVPGHCDIPGNESADRLADLGRTSRR
FT                 LTSEIPGADVKSWLKTAVKHAWSKDWWSDRTLFIRKIKGITTPWKDRIDRK
FT                 EQIILSRLRTGHTKVSHNMGGGRNFRIICDNCGTANTVEHMLCVCPALESY
FT                 RTQYNLGGIDTILSNDLAMETALIHFLKDTRLFTAI"
XX
SQ   Sequence 6839 BP; 2178 A; 1648 C; 1473 G; 1540 T; 0 other;
     cagttgccag cttgctttga tagcagtcgg tcgcattttt caatcgctcc gtatgagtag        60
     gtagtaggta gtgcgcagcc tattgtgttc acttagctac acattttcga gtgcggttct       120
     gctcggtcaa cgagctcggt tagagtgcaa gtgtccttga attcaatact cgttcgaaca       180
     aaagtgcagc aagtgtagtg cgaatagtgc gaaaagaata accataataa aaagaacgac       240
     ccgtgttcca acgccagttt ttttggaaag cattacttag acaccatccc actccgccgg       300
     tatgatgccg gggagtgggt ccgctcccca cagaggggac ccagggggcc ctggtggagg       360
     agggaatagt ccgaggaaca tgtttcaagg aacttatgcc ggacaacgct tgcccaccta       420
     catggacaag gagggtatcg caggttcact ccaagtcctc aaaatgcagg cagtagggga       480
     aaatacctcc ctccctaatg accctttcct attacggctc tcggttgaaa aatgtgtcgg       540
     aggacccatc gatggggcct ttaaggagaa tcgcggcatt tcttacgctt tgaaggtgcg       600
     cagcaacgtg cagttccaga aactgctaaa aatgagtcgg cttatcgacg gaaccgaagt       660
     gatgattacc gaacatccgc aactcaacac cacaaaatgt gttgttagta attatgattc       720
     ggtcggactt tcggatgctt acctgaagga acagctagca agtcaagggg tacgagacat       780
     ccgtagaata caaaaaagga attcggccgg agtgccagaa aacacaccca ccatgatttt       840
     gtccattgtc ggtacggtca tccctgagca cattgatttt ggttggaccc ggtgcaaaac       900
     caggagtttc tacccctcac ctatgctctg ctaccactgt tgggagtatg gacacacaag       960
     aaagcgatgc caggaaaccc accaaatttg tggcacatgc tcacaagtgc atcctgagga      1020
     caacatcctt aatggatcca acagtcgaaa cgccgaagat gatgaattct ccaacaagaa      1080
     accacattgt acgaaccccc cattctgtaa gaactgcaaa tctaacggac atgccgtttc      1140
     aagtcgaaag tgtcctgttt acagcaaaga gactgccatt cagcatatcc gaatcgatat      1200
     gggctactct tacccccagg ccagaaggga gtacgaggcc caacaaggtg ccaccggaaa      1260
     cagtggatca tacgctagaa ttgccaatct gagcaaggat aaagagattg ctgatatgtc      1320
     cgacgttgtt aagaaacttc aggatgactc gaaacggaaa gacgaaaaga tcgcggaact      1380
     ggaaaagatt gttcaaaacc gtagtgtcgg caagaggttg gaccaggttc aaaagaacgg      1440
     tacaatagag gatttaactc gaagggttat tcagctaacc gaagcagtgg aacagctaca      1500
     aaaaactgtt caggaaaaag accgtgaaat ttcacgcctg cgccagtacg aaacgctcta      1560
     cacccatatg gaaccaagtc agtctataac aacggtcagt cagtctttag tacccactcc      1620
     tgattgcgct tcaataccgg caacaccagc ggcaccctac gatctcaggg atcctagaat      1680
     caggtcgcga tgctcaaaat ggatcgctga aaataacagc agcgaaaatg gcccagcgca      1740
     aaacaccaag aacaaccgta ggaaacagaa acaccgaaag caatacgaat caaacaaaga      1800
     cagaggattc tcttctgaag aaagtatgaa gagcttccac tccaagaact caatgcaaac      1860
     tacgacctca gtaggaacaa gcgcctctaa cccaaccaaa agaaatcacc caaccacaga      1920
     ctccgacagc gactccaacg gccgtacttc gaaatctaag cgaagcggcg ttgatggtac      1980
     ggatacaatc gaaatcgaat aaacatcgct atccgttcag tcctctcagc tgaagctaag      2040
     cacccgtaaa ctccttacta ctaaactatt atcttcagta cccaaaagaa gcccgtgaag      2100
     aagaagaatc gagagttgac tgaaccaaca tctcccctat caactaccaa cacaacaaga      2160
     acaagaagag cagcagtgaa agctccggat agtcggggcc ccgtcagtgc ggacattaca      2220
     ccccaaccgg aactggcgga caacctccgg catccgagag tgattcttgc atatgggacg      2280
     cacaagggaa tacaaacccg ttccccattt tccccagata cttctcagga cagaaaagca      2340
     cctggcggag taactggaag agggacgcac aaaagtagca atacttgtac ccctgaggac      2400
     agcgagggaa cccaattcaa cgatggacac caaaatagac atttccacgt ctattctcca      2460
     ttgcacaacg tggaagtcaa gccagttctg agaagatacg atctccgaac acgcatcaaa      2520
     ccaccgcgaa acaggttaga tactccttcc tcttcaaaag tgtttataac atctcgatta      2580
     ccaccacttg gcccggaggt ttgcaacgcc gatctctatg atcaacttca tcgtgtccgc      2640
     tttggagctt cagcttcgat aaaagcggga ccatcaaacc tatcttgcgt gtcagcttct      2700
     cgaaaaaaat ttaaaaatgt taatcccttg gatcctcctt ccgattccac cggcacatct      2760
     aataccgcta ccgtaagtca atctaggttt acctgcagtg ggtctgtttc aagatctgct      2820
     atcgtctccg aaaagtcaga ttgttcatct ccaccgccag aaaacagcga accggaacgc      2880
     gcttccggtg taacttcatc agattgtaat cacttgagga aaacaagtaa catcggcaac      2940
     agtgagcagc acacatggat ccttcagtgg aatatgaatg ggttttataa caatctgcct      3000
     gatctacaaa agattgttgt tgacaaggat ccctctatca tcgcattaca ggaaattcat      3060
     aaggcaacaa cagagagcat ggataataca cttgggagaa agtacaaatg gattactaaa      3120
     ataaaccgaa atatctatca ttccgtaggc attggcattg cagccgaact tccattttca      3180
     aatataacct tggacacaaa ccttccaatt atagcggtac gattgtcttg gcctttcccg      3240
     gtcacagtag tttcagcgta catcccaaat caaaatatac ctgatcttga aaatcaagtt      3300
     aagcaactaa taggaaagtt gccagaacca ataatcctac taggagatag caatgcacac      3360
     caccaggcgt ggggaagccg tcacaccgat gctcgtggtg ctatattgct cgaaatagct      3420
     ggccaaaatg gactgaccat actcaacgat gggtcaccta cgtttatgag aggccaacat      3480
     gaatcagcaa tagatatctc tcttgcctcc atgaccataa tgaatcggat aagctggtcg      3540
     gcagaatgtg atccgatggg aagtgaccac gtcccaataa ccattctcct taacacgact      3600
     cccccaaata catctcgacg accacgatgg atctatgaca aagctgactg gtcaggattc      3660
     caatcatcaa tcaacagttc attcaaaaat tccgaaccaa aatcgataac ggaattcact      3720
     gaagcaattc atgaggccgc aaaaactaac ataccgaaga ccagccctaa ccctgggcgc      3780
     cgggcccttc gttggtggtc cgaggacatc aagaaggctg ttaaagcacg acgcaaggca      3840
     ctcagagccg ccaaacgact tccagcagaa caccccgaca aggaaaaagc agttttgaag      3900
     cttcgcaccg ctcgaaacga atgtcgacaa atcgtacggg aagccaaaga acgctcttgg      3960
     gcagaatttc tagacagcat aaacgattcc caatcttccg ccgagctttg gggaaaagta      4020
     aacgctatcc agggtaaaaa gacaaagaat ggtatagctc tcaaaataaa aaaccaaacc      4080
     gttagagatc cagccataat agctgacgca ctagctgatc atttcttcaa tttatcatca      4140
     cttcaacggt acccagaagc atttctaaag cgccactcag gagcaaagac agccattgca      4200
     gattttgtta ttccctctgg taccgacgaa agctacaacc aaacgttctc tatacaagaa      4260
     cttcaatttg ttctacaaaa atgctgtgga aaatcttcag ggccggatga aattggctac      4320
     cacatgatca aaaaccttcc aatgcactgc aaagcaatct tactcgagat gatcaacaag      4380
     gaatggacat ccagaacttt tccagaaagc tggcgacata gcctaatagt gccaatccca      4440
     aagagtactg gaccatctag cgatccacga aattatcgac caattgctct aacaagctgc      4500
     atgtccaaaa tcatggagcg gatggttaat aggagactga tggagtattt agatataaat      4560
     gggaaactag actaccgaca gcatgcattc cgatctggcc ttggcactgg aacatacttt      4620
     gcgactctag gtcaaaccct cgatgatgcc atttcgtgcg gtgagcacat cgaaatggct      4680
     tctcttgact tggccaaagc ttataacaga gcatggactc ctagtgtgct tgagaaattg      4740
     gcacagtggg gagtaacggg aaatctgctg gccttcctaa aaaacttctt gacaaataga      4800
     acatttcagg tgattatagg aaatcatcgc tccaaaccgg ttgcagaaga aacgggggtt      4860
     ccacagggat cagtgatagc agtcacttta ttcctagtgg ctatgaatgg ggtgttcgac      4920
     gttctgccta agggtatatt tatttatgtg tatgctgacg acatacttct ggtcgtcacc      4980
     ggaaagcacc caaaggctat tagaagaaag ctgcaagccg cagtcaacgc agtggtgaaa      5040
     tggactgatc ttgttggatt tgatatctct ccagagaaat gtgttagaat gcatatatgt      5100
     gcccaaaaac atcgaccacc ccaaaaacct atcactgtta aaggaaaacc aatacccaca      5160
     aagaagtttg ctaagatact tggtgtcaca tttgaccgaa atttatcctt tcgaccccac      5220
     tttgaagcaa tcaaaaaaag ctgtgcaaat cgtatgaacc tgttgaagat cctatcaaat      5280
     aaacgaacga gaagcgatag aagatcacga ctgagaattg cagatgcgat catctgtagc      5340
     cgtcttctat acggggttga tatcacttgt agagcttctg atgagcttgt aagcatccta      5400
     agtcccacgt accataacgc aataagaacc atctccggct tattaccatc gacacctgct      5460
     aaagctgctt gcgttgaagc cggagttatg ccgtttatct ataaggtagc aactacaatc      5520
     ggtaccaaag ccgttagttt tcttgagcgc accaaaggtg acggatcgcc ggctttcctt      5580
     gcgacagaag ccgaccgaat cctaaattca gtggctggag tcacgctccc ctcggtggct      5640
     gagctccacc gtatcggacc taggagctgg cgagccagcg agccattggt agacaatttc      5700
     atcaaaaata gacttaagaa gggatctaat ccgaccatag ccaaatcact attcaatgag      5760
     cgtatcacaa caaaatacgc caacacagaa attatgtaca cggacggatc caaactatcc      5820
     aataaagtcg gaatcggcat tgcgggaaag cacatagagg atcattttag cctacctgac      5880
     tcggtgtcgg ttttctcggc tgaagcggcc gcaataatgc aagctgtatc tcatcgatca      5940
     acgaaaccca aactaattgt tacggactcc gccagttgta tcctatccat tagatcccaa      6000
     acatcaagac atccatggat tcaagtcaca caaagtttgc tagaaactag aggtacccca      6060
     aaagtaagtt ttatgtgggt tcctggccac tgtgacatcc caggaaatga gtctgcagat      6120
     cgactggcag accttggtcg aacaagccgc cgactcactt cagagattcc cggagctgat      6180
     gtgaaatcct ggctaaagac agcagtgaag catgcatggt ctaaggactg gtggagtgac      6240
     cgaacattat tcattcggaa aataaaagga atcacaaccc cctggaaaga cagaatcgac      6300
     cgaaaggagc aaataatcct gtctcgtctt cgaacgggac atacgaaggt ctcccataat      6360
     atgggaggag gtcgaaattt ccgtatcata tgtgataatt gtgggacagc caacacagtg      6420
     gaacatatgt tgtgtgtttg tccggcatta gaatcatacc gaacgcaata caatcttgga      6480
     ggcatcgaca caatactgag caacgatttg gcgatggaaa cagccttgat acactttttg      6540
     aaggatacaa ggcttttcac tgcaatctaa ctcaataatg cagatagaaa aacggacttt      6600
     gatgaagact acgagactac aacagacaac gagcacctga tatttacata aatactaaac      6660
     tctgataaat taagtatgag agtagtcttc agactatttt ttttttcttt tcaaaaaact      6720
     ctgtaaaaaa ctctgtttgc aacttttgtg atggatcctt aagacccatc tataatcaga      6780
     gacgaaccgg ccttgggccg aaagtctctt taataaagaa ataaaaaaaa aaaaaaaaa       6839
//
ID   I_Ele14     repbase;    DNA;    INV; 7294 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele14.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7294
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7294
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >86% identity, and ~92% identical to the original
CC   sequence in [1]. ORF1 is broken.
XX
FH   Key           Location/Qualifiers
FT   CDS           3200..7057
FT                 /product="I_Ele14_1p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MPGPALGGAPLESATRTLCPPNGFSQTYFSTAAPSPL
FT                 PVVGSTPGPTLGGALSGSVSSTFLGSTNSKETSLSSFPVPALPTSHNFILQ
FT                 WNLNGYRSRLCDLELIIQNNQPWILALQETNNISADEMGRTLGGQYAWTVK
FT                 RLANQRHSAAIGILKGIPHKILDLPSDLPIVGIQLLGSPSVSVACAYLPGG
FT                 NIPNLHGQIQNCLQALPEPRIFLGDLNSHHPVWGSPKADKRGSTLINAFEE
FT                 EDMLILNDGSPTFFNGHFSSEIDVTAVSLSFARNIQWSVSSDLHGSDHFPI
FT                 RIALTTGASIPKNTRRPRWKYDKADWAEYDLLIRSALRNSPPDNMADFIST
FT                 IVESAKATIPRTSSTPGRKALRWWSDETKTAVKARRKALRQLRRLPLDHPD
FT                 RQSTLENYRKLHLECRNIIGDAKKATWESFLESMNASQTTSELWNRVNALN
FT                 GKRKTTPLTLQVQGNAISDPEAVASELGKYFASLSAIESYETHFXNSVKPS
FT                 TSAINNFIIPPNTADPEMEQPFSARELSFALSRSNGRSAGPDEVGYPLLKN
FT                 LPSVGKLALLDLYNKIWANNDFPPAWKESLVVPIPKANIPTRDPTKFRPIS
FT                 LTCCAGKVMERMVNRRLRYHLEANGLLDFRQHAFRQGYGTSTYFAGLSDVL
FT                 KEAYDKGNHAEVISLDISKAFNRTWTPLVLEQLAAWGIGGRTLHFVRNFLA
FT                 DRTFQVVIGNTKSSTFPEETGVPQGSVLAVTLFLIAMNGVFSRLPKNIYVF
FT                 VYADDIVIVVCGSTPTMTRIRAQTAVKSVAKWASDNGFQLSASKSIRCHIC
FT                 PSGHRITGPDITIDGQPIPLRKTVRILGVIVDRALSFRQHFDTVKSACRSR
FT                 LNLIKSISRPHRSNNREIRFRVARAIVDSRLVYGLELTSIAMDRLVEVLSP
FT                 IYNSYIRIISGLLPSTPSDSACVEAGLLPFRIFIRSSICCKTAAFLSKTAG
FT                 EDRVFLLDEGNRALSTAANLSLPPVTRVHWLGDRSWRSVPPKIDNKIKNSF
FT                 SAGSNSAALRRSVAELLQTSYSDFALRYSDGSLTSAGVGIGVAGDIPDVSM
FT                 SLPSQCSVFSAEAAAAFIAATTPSDRSILVLTDSASVISALQSDSPTHPWI
FT                 QAILKYALPDTVFTWIPGHCGVPGNEMADHLARSGLSGQRYTSEVPFMDLK
FT                 RWIKSTFRQHWEDSWYRTRTLFLRKIKNSTTTWSDLPILKDQRILSRLRTG
FT                 HTLISHNMGGGPFHKECESCHIPASVDHVLCACPMYEHLRQIHGLSDNIGE
FT                 VLRDDATTIAALLSFLRDANLYSSI"
XX
SQ   Sequence 7294 BP; 1894 A; 2065 C; 1686 G; 1634 T; 15 other;
     cagttgacag ccgaccgccg tcgcgtacag tcgcctttcg cattgttccg tactgttaat        60
     atcaattaac agcgcatcag ccaactcgat cgttgtctga cggggtgctc cacagcgggg       120
     cgagtgtgca ttgttttatt ccggatcagt gcagcaccca gtggtgtggt gagaagtgag       180
     gttaaataga ctcggtagcg tggttcgagt actgtatakt attatttcgg gcgcgagtgt       240
     atgtgttagt aacttgtgag tggtataaat aaaattatct tcaaattaaa aagcggttca       300
     gtggttttca actgtagtgt gactgaccaa ccaaaacagg tgagtcttcc acgagtgcct       360
     ccttccggcc cgccggcgcc atgctggcga acggccatcc cctccaccca ggggacccag       420
     ggggccccgg aggaggattt ggcaaagtag gcaacagagt tctcggcgac tacaccggtg       480
     cattgctacc ggagtttatg gaccgtgaag gtactgcagg acaactgcag tatctaagaa       540
     tggaagcgac tgctggaacc atgccccagg atccgtttct tcttcggcta tccgtcgaaa       600
     aggccattgg aggtcccatt ttcggggcct tcaaggaaaa taaaggcatg tcctacgtgt       660
     tgaaggtgcg cagtcaagac caggtmaata agctcctccg catgagccaa ctgcaagata       720
     amaccccaat ccggatcgct gagcacccgc ggctmaatca aagggaatgt gtggtgacca       780
     accatgacac aatcggacta tcggatgact acctgcttca acagctctcc tcccagggaa       840
     tcaagggmst gcgaaggatc acgcgacgcg gaccggcatg gccaaagccg tggtaaacac       900
     cgccaccatc gtactcacca tcaagggcac cgttattccg gagcatgtcg ttttcggttg       960
     gtcacggtgc aagacgacgt cttttctacc catctcccat gctatgcttc cgctgctggg      1020
     agtatgggca taccggtaag cgttgcacaa gcccccagca gcatctgcgg acgctgctgc      1080
     gaggtacacc cggaagaaca aacccccgat cctacaaaca cccaggaagg agccgccagt      1140
     gcccacgttg cgtcgaaaac gcggtaccag tgcaccgcag agccgttgct gcaagaccag      1200
     tgcaaaacag gagacagcac tcagtctcaa gccgcaagtg tccggtgtac wwgaaggaac      1260
     aggccataca acaccttcgc gtcgacgtgg acattccgta tccgcaggct cgacgtgaat      1320
     acgaagccca acaagcgagc aagtcgaagt ggtgccaact tctgccggtg tggtcagtgc      1380
     cagcaaggac gctgaaatcg acagtctgaa ggccatggtg gctgcaaaac tccgcggacg      1440
     gagaagaaaa gaggatggct gaaatggaac gggctctgca gagccgcacc gtcagcgacc      1500
     gcctcgaggc ggttaaagaa cacggcacca tcggagagct ggtcaagcaa gtggcaaccc      1560
     taactgaaac ggttcagaac ctccaaaatg ctctagcagt aaggacaaac aaatcccgga      1620
     tcaaagtcgc accatcgctg agcttctagg caggcaatca gctgccgtcc aacgacaaac      1680
     ccgcgacaag ctttggctta ccgcgcaaga sgatcaaacg caaaccgccc caagtcgcca      1740
     gaggttcccg tcatgaaacc gcccagtctg aaccccaaag tggacgtaca ggtgtccaaa      1800
     tggatttcaa atataacacc ggacctcaag aaactctcac aggcgatgaa accaacgatg      1860
     gaaatgcgtc tgatcatagc atgatgtcag ccacatccga agccactgga atctccaaca      1920
     cgtctcacgt ttcgaaccct acgaaaagaa tgcactcaac ctcggatcac agttgcccat      1980
     ccggcgattc aaatgcctca tccaccaact cgaagcggaa aaacaagcac cgcaaaagag      2040
     gtggtagaac caaacagtaa aacagtaatt tacgctcagt cctcttcaag cacatggtct      2100
     aaacaattcg acaatatttt cttcccgtca tcttcactcc gcaaattagc gttgagacag      2160
     tcaaatcaca agagtcgact gagcaaatac cgatgaacac actacagcct ccgaacgaag      2220
     tactcacgga caactcagcg acaacagggg tcacggacag ccggggcccc gtcagtgcgg      2280
     acgctacacc ccaaccggaa ctggcggaca acccccggca tccgggcgta actgttgtta      2340
     tcgggacgca aaagggacac agtgcctatc ccccgaaagt cccaactagc tgtatgggta      2400
     cgccagggcc ccgtcggtgc ggaagttttg gaagaaccgg aaccggcgga caacctctgg      2460
     cgcccatata cggtctggaa gagggacgca aaagggatca acatcctatt cccctkagga      2520
     cagcgtggga agcaagccac aggaaacctt ttttctgccc ctgccaacac acagagggtg      2580
     aaggtcggga cgcccaatac cccgaaggac aacgagggaa gcaagcctcc gtcgagtcga      2640
     aacccccccg gaasagaaaa ccgccggacc actacacctc caactggcac aaccaccccg      2700
     gtcagcgaca agctgaatcc cccgacttcc cgggcagcct tgggacccgg aagcaagcga      2760
     cgccaggttg tatgacctgt tacacaacgc tcgttacaat cgctcagccc gccgacttca      2820
     gcccgggtat tccggaaccg tttccagact tcaactccaa acgcggaagc atacgaaaac      2880
     cgatcgccat ccgcgataat katagctcaa cccgctgctg gcccctcaag ccaaacagcc      2940
     tccccagatc cctatcagga tcgccctggg cacctcggac tcaacaatcc gagcggtaag      3000
     gccgaccctt tcccgctggg cctccacccg gtgaatcttc gtccgccaca acaacctatg      3060
     tcaacccatt tttcgacgcg gctcccagtc ttcttcgctc tcaaactcac agcagcactc      3120
     cttgataagg tttcctagca gccctgttgg aaacgactgt cttgccgcag ctcccgaagt      3180
     tccggcagta gtaggtccca tgccgggtcc cgcgcttggt ggggctccgt tggagtcagc      3240
     tactagaacc ttatgtcctc ccaatggctt ttcccaaacc tacttttcta ccgcagctcc      3300
     ttcacctctg ccagttgtgg gttccacacc gggacctacg ctcggtggag ctctgtcggg      3360
     gtctgtatcc agcactttcc tcggttcaac taattccaaa gaaacttctc tctcaagttt      3420
     tccggttcct gctcttccta cgtcacataa tttcattctg caatggaatt tgaatggcta      3480
     caggtctcgc ctatgcgatc tggaattgat tatccagaat aatcagccct ggatcttagc      3540
     ccttcaggaa acaaataata tatccgccga tgaaatgggt cgcacacttg gtggccaata      3600
     cgcctggact gttaaacgat tagcaaatca acgacattct gcggcaatag gaattctcaa      3660
     aggaattccc cacaaaattc ttgacctacc ttccgacctt cctatagttg gaatacagtt      3720
     actaggttcc ccgtccgtct ctgtagcctg cgcttatcta ccaggtggga acatcccaaa      3780
     ccttcacggt caaatccaaa actgtcttca ggccctccct gaacctcgaa ttttccttgg      3840
     tgatctcaat agtcaccatc cggtctgggg ctctcccaag gctgataaac gcggcagcac      3900
     cttgattaac gccttcgaag aggaagacat gctgatttta aatgacggct caccaacttt      3960
     tttcaatggc cacttttcca gcgaaattga cgtcaccgca gtctcgctct cttttgccag      4020
     aaatattcag tggagtgtaa gttctgatct tcatggtagt gaccactttc caatccgaat      4080
     tgcattgacc accggcgcgt caattccgaa gaacacgagg agacctagat ggaagtacga      4140
     taaagctgat tgggctgagt acgatttgct tattcgttct gcccttcgaa acagtcctcc      4200
     tgacaacatg gctgatttca tctcaaccat agttgaatcc gctaaggcca ccattccccg      4260
     caccagcagc acccctggcc ggaaggccct tcgatggtgg tctgatgaaa ccaagactgc      4320
     agtaaaagcc cgcagaaaag cgctgcgtca actacgaagg cttccacttg accatccgga      4380
     caggcagtct accttagaga attatcgcaa gctccaccta gaatgtcgga acatcatcgg      4440
     tgatgccaag aaggccacgt gggagagttt tttggagagc atgaatgcat cccaaactac      4500
     cagtgaactg tggaatcgag taaatgctct gaatggaaag cgaaaaacta cacctctcac      4560
     tcttcaagtg caagggaatg ccatatctga tccagaagca gttgcaagtg aacttggcaa      4620
     atattttgcc agcctatcag ccattgaaag ctacgagact cactttttka attctgtcaa      4680
     gccttccact tccgctatca acaattttat cattccacct aacactgccg atcctgaaat      4740
     ggaacaacca ttttcagcca gggaactctc cttcgcgctt agtcggagca atggaaggtc      4800
     agcgggtccc gatgaagtcg gatatccgct cctcaaaaac cttcccagtg tcggaaaact      4860
     tgcgctgtta gatctctaca acaagatctg ggccaataat gatttccctc cwgcttggaa      4920
     agaaagtcta gtagtcccca tacctaaggc taacatcccc acccgcgacc caactaaatt      4980
     tcgaccgata tccttgacct gctgtgccgg aaaagtgatg gaaaggatgg taaatcgaag      5040
     gctaagatat cacttggaag ccaacgggct actggacttc cgccagcatg cctttcgcca      5100
     aggctatgga acatctactt acttcgcagg tctcagtgac gtcctcaagg aggcctacga      5160
     taaaggtaat cacgccgaag taatttcact tgacatctcc aaggctttca acagaacgtg      5220
     gaccccactt gttctggaac aactggctgc ttggggcata ggcggaagaa ccttgcattt      5280
     tgtgcgcaat ttccttgccg ataggacctt ccaagtagtt attggaaaca caaagtcatc      5340
     caccttccct gaagaaacag gcgttcccca gggttctgtg ctagctgtaa ctcttttttt      5400
     gatcgcaatg aacggcgtct tctcccgtct gccaaagaac atatacgtat tcgtttacgc      5460
     ggatgatata gttattgttg tttgtggatc aactcctact atgacgcgga tccgagctca      5520
     aaccgctgtc aagtcggtag cgaaatgggc atcagataat ggtttccaac tgtccgccag      5580
     caagagcatc cgttgccaca tttgtccatc cggacatagg ataactggcc cggatatcac      5640
     gatcgacggt caaccaattc cgcttcgtaa gactgttcgc attctcggag taatagtaga      5700
     tcgggctctc tccttccgtc aacattttga taccgtcaag tcagcgtgtc gatctaggtt      5760
     gaacctgatt aaatccatct cccgcccgca tcgatcaaat aatcgagaaa tccgcttcag      5820
     agtcgcccgt gccattgtag acagtcggct cgtatacgga ttggagctta ctagcatagc      5880
     gatggataga ttggtcgaag ttctcagccc aatttacaac tcctacatca gaataatctc      5940
     tggtctgctt ccatcaacac cgtcagattc cgcttgcgtg gaagctgggc ttcttccatt      6000
     tcgaatcttt attcgctcct ccatctgctg caaaacggca gcattcctca gcaagacagc      6060
     cggcgaggac agggtctttc tccttgatga ggggaacaga gccctaagca cggcagccaa      6120
     cttgagtctc ccgccggtta ccagggttca ctggctcgga gacaggagct ggcgttccgt      6180
     cccaccaaaa atcgacaata aaataaagaa cagtttttct gccggcagca actctgctgc      6240
     tttgcgacga tcagtcgcag agctgctaca aacttcttat tccgattttg ctcttcggta      6300
     ctccgatgga tcccttacaa gcgccggtgt cggcataggg gtggccggtg acatcccgga      6360
     cgtaagtatg agcctgcctt cacagtgttc agttttttcc gccgaggcag cagcagcttt      6420
     tatcgcggct accacccctt cggaccgttc gatcttagtc ctaaccgact cagccagcgt      6480
     aatatctgcc ctacagtcag attcgcctac acacccttgg attcaagcaa tattgaagta      6540
     cgcactacct gacacggttt tcacgtggat ccctgggcac tgcggagttc cagggaacga      6600
     aatggctgat catcttgcca gatcgggcct ttcaggtcaa cggtatacct cagaggttcc      6660
     tttcatggac cttaaacggt ggatcaaatc taccttccgc caacattggg aggactcatg      6720
     gtaccgcaca agaacgcttt tccttcggaa gattaaaaac tcgaccacta cttggtcaga      6780
     cctkccaatt ctcaaggacc aaaggattct atctcgctta cgaaccggac acaccctaat      6840
     atcgcacaat atgggaggcg ggcccttcca caaagaatgc gagtcttgcc atatcccagc      6900
     ctctgtggac catgtccttt gtgcctgccc catgtacgaa catctgcgac aaatacacgg      6960
     cctttctgac aacatcggag aggtactacg cgacgatgca actactattg ctgctttact      7020
     gagttttcta cgcgatgcca acttgtacag cagtatatga tcctgcccaa tatgacgacg      7080
     acattgatgc cagcccacgg atacgaaact gttttactaa attgtactat gtatagatgt      7140
     aagcttgaaa tgttagattg acagttatct ccttttcatc ggttcagtct tctgctgacc      7200
     gtatttctcc agggtctcag ccttctgctg agccttctcc cgtgttgaac tagcataatg      7260
     ttaaaaaaca cgttaataaa gatgaaaaaa aaaa                                  7294
//
ID   I_Ele15     repbase;    DNA;    INV; 7196 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele15.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7196
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7196
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           5..604
FT                 /product="I_Ele15_1p"
FT                 /translation="MKAFLAQQQQMFSNAMKHLYTQNLKMQEEFESMKKSM
FT                 STISPPNAKIVDLKQCILSATQPAEKSLNSNPSATTNQDGAVISILDLSSS
FT                 TMSETDPIEPEEKTSALDSTADISDEEYSDPSPVVSPNTIPAKSFDTPRPK
FT                 TIISNPNDSSHKTPTNSKPTKAANKRTATELSPLENARGNDPLPKHKRQLP
FT                 ATGRNRSNKQ"
FT   CDS           679..5886
FT                 /product="I_Ele15_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANSRGAFGLEAIPQPAPSNRPRHLSSISDEENSATN
FT                 SRGADRPEVRTQPEQSNRPRRSSDENINYASFSPARAPGSLGPSSADDFST
FT                 PELVDNPWRWGKSGRGTDKGINTHSPTDHVGVKLNRFSGRTRGEILVPRRT
FT                 SRESSQQTKPSTPQPVLPGQPETSVSGGKTRSNRSSSTQTKPSFLPAGCIK
FT                 PHRSEALAKSRSNKIKITLLSSNQQTHAHGGHPTTTSFEDPITMGKSDSHF
FT                 LSSHQIQTATCQPALPGHPELLVSGGKPHPRSPTPDNNEPSPLLAGRVKCP
FT                 LDGALAKNRPLSNQQPPTHGKSPTPTAPDHPITMGNMAPYTAPSSPQSSSP
FT                 LWESSTSHANASTGTFSKDPVSPTDEGPRSTVEPNRISNIRKLPSDCLTNS
FT                 EKYDSYIASSLGPGALLAPCCSTNRASLAVDLFGHPMHSNLGGKSQQLAFS
FT                 HEIACDVDINSNSNLETTSSWGDSRPAAVWGLERLNRFQHSAGEIGSETGN
FT                 NPNADGRCISAPSPPSRLSETHSSTHSHPNVNRNARLILQWNINGFLNNLS
FT                 NLEMLVNQHEPLVIALQETHKASVDIMNSRLGKKYSWHAIRGSNFYHSVAL
FT                 GTINEIPYEILQLDTDLPIAAIKISWPFPMSIVSFYLPNGKLTNLKNRLID
FT                 TFDKIPDPKIILGDGNGHHTTWGSRVNNARGSAIFETATETGLCILNDGCK
FT                 TFIRGRVETSIDISLASHNIIDRLLWSVDNDLSGSDHFPIWIQLNSSPPKT
FT                 SRRPRWLYDQANWKIFQDRMEEILESSPPSSIDHFSNSIIEAATAAIPRTS
FT                 PTPGRRALCWWSETTKKAVKARRKALRAARRLPADHPEKIAAMEKYRDANN
FT                 KCKFIIREAKEKSWTSFLDEINDNQSSAELWSRVNAIQGKRQTRGLVLKSG
FT                 NQTTRDPILVADALADYFGDLSSFHRYPLDFQKKHQPANAAFAMTQVPGFP
FT                 VQNFNKEFSMDELLFALSKSKGKSAGPDQIGYPMLKKLPPIGKRKALDLIN
FT                 SEWLAGTLPDSWKCSLVVPIPKACGTNYDPSDFRPIALTSCLAKMMERMAN
FT                 RRLVEYLEKNDLLDNRQHAFRAGFGTGTYFAALGDILNGALERNEHVEMAS
FT                 LDLAKAYNRAWTPGILKCLMDWGVTGNLASFVKNFLTNRRFRVSIGNHQSK
FT                 EIPEETGVPQGSVIAVTLFLVGMNGVFQSLPKGVFVLVYADDILLLVTGVH
FT                 PKMVRRKLQAAVNAVAKWAIKVGFEISATKCARLHICNSKHQPPKKPITVN
FT                 GTAIPNKKTVKIVGVTLDRHLSFKAHFDNVRSACKSRINLLRLISGKRKRS
FT                 DRTSRIRVANAIVNSRLLYGIEITSQRFDELISNLGGTYNNAIRIISGHLP
FT                 STPADSACAEAGVLPFRYKLANSIGSRAICFLERTKNDGSEACIEIQANQI
FT                 LRSVAGIELPSVSERHRNGARSWSARKIKVDNYLKQKLKKGGNPRLAQALF
FT                 LDRIRTKYRIYNVRYTDGSKALGKVGIGWCGIGFRESRSLPSQCSVFSAEA
FT                 AAIFQAILQPSDLIGPVLIATDSASTIAAILSDTNKHPWIQEIQDVLDDEE
FT                 NITLMWVPGHSGIAGNEEADRCANTGRDSERLTDIVPSADLKLWLREKVND
FT                 AWRRKWQSERNLFTRKIKGDVRKWEDRPDRREQVILSRLRTGHTRVSHSMS
FT                 GGPNFRRICETCQVHNSVEHFLYTCPTLELLRKQYDMGSIRTSLQDDRSSE
FT                 AVLFRFLKDAKLFDEI"
XX
SQ   Sequence 7196 BP; 2072 A; 1995 C; 1601 G; 1528 T; 0 other;
     atatatgaaa gcctttctcg cacagcaaca acagatgttc tccaacgcga tgaagcacct        60
     gtacacgcaa aacctcaaga tgcaggaaga gttcgaatcg atgaaaaaat cgatgtcaac       120
     gatctcacca ccaaatgcaa agatcgtcga cttaaaacag tgcattctct ctgccaccca       180
     gccggcagag aaatcgttaa acagcaaccc atccgctaca acaaaccaag acggtgccgt       240
     catcagcatc ttggacttat cgtcctcaac gatgtcggag acggatccga tcgagccaga       300
     ggaaaaaact tccgccttgg attcaactgc cgatataagt gatgaggaat atagcgatcc       360
     atctccagtc gtctcaccga atactattcc agccaaatct ttcgacacac ccaggccgaa       420
     aactatcatc tccaacccga atgactcttc tcacaaaaca ccaacgaact ctaaacccac       480
     taaagcagcg aacaaaagaa cagcaaccga actttccccc ttggaaaatg ctaggggaaa       540
     cgatcccttg ccaaaacata aaagacaact acccgccacc ggtcgtaacc ggtcaaataa       600
     acaatagctt tctctcccag caaaaactcc tccgtcaaca aacctaccga ccctacaaca       660
     accaactgtc cgcttttgat ggcaaatagt cggggcgcct ttggactgga agctataccc       720
     caaccagcac catcgaatcg accccggcat ttgtccagca tttcggatga agaaaatagt       780
     gccacgaaca gtcggggcgc cgacagaccg gaagtcagga cccaaccgga acagtcgaat       840
     cgaccccggc gttcgtcgga cgaaaacata aattatgcaa gcttttcccc agcgagagcc       900
     cctggtagcc ttggtccctc cagtgcggac gacttctcca caccggaact ggtggataac       960
     ccttggcgct gggggaagtc tggaagaggg acggataagg gaataaacac ccattcccct      1020
     acggaccacg tgggagtcaa actcaatcgt ttttcgggac gcacaagggg agaaatcctc      1080
     gtcccccgaa ggacttcgag ggagtcaagc caacaaacga aaccatcaac accccagccg      1140
     gtgcttcctg ggcagcccga gacttccgtt tcgggtggta agacccgttc caatcgctct      1200
     tcatcaaccc aaaccaagcc atctttcctc ccggcgggtt gcattaagcc ccaccgcagc      1260
     gaagctctag ctaaatctcg ttccaacaaa atcaaaataa cactcctctc gtcgaaccaa      1320
     caaacccatg ctcatggggg acatcctaca acaacctctt ttgaagatcc aatcacgatg      1380
     ggtaagtcag acagccattt tttatcaagc catcaaattc aaaccgcaac atgccaaccg      1440
     gcgcttcctg ggcaccccga actcctggtc tcgggtggta agccccaccc cagaagtcca      1500
     acaccagaca acaatgagcc atctcctctt ctggcgggtc gtgttaagtg ccccctcgac      1560
     ggagctctag ctaaaaatcg tcccctctcg aatcagcaac cccctaccca tgggaaatct      1620
     cctacaccaa ccgctccaga ccatccaatt acgatgggta acatggcacc ctataccgca      1680
     ccaagctcgc cacagtcttc ctcacctctg tgggaatcat ccacttcaca cgccaacgca      1740
     tctacgggca ccttctccaa ggatccagtg tcgcctactg atgaaggacc tagatcgact      1800
     gtcgaaccaa accgaataag caacatcaga aaactcccct cagactgcct caccaacagt      1860
     gaaaaatacg atagttatat cgcttcttcg ctgggccccg gcgctttatt ggctccttgt      1920
     tgttctacca acagagcaag tttggctgtc gacctctttg ggcaccctat gcactccaac      1980
     ctaggcggta agtcccaaca acttgccttt tcccatgaaa ttgcctgcga cgttgatatt      2040
     aattccaact ccaatctgga gaccacgagt agttggggcg acagccgacc agcagctgta      2100
     tggggactgg aacggttgaa ccgttttcaa cactcggcgg gcgaaatagg atccgagaca      2160
     ggtaacaacc caaacgcaga tggaagatgc atctcagcac cttcccctcc ttcaagactc      2220
     tccgagaccc actctagtac gcactcgcac cctaatgtca atcgaaacgc tcgactgatt      2280
     ctccagtgga acataaacgg ttttctcaac aatttgtcga acctggaaat gttggtaaat      2340
     caacacgagc ccctggtcat cgctttgcag gagacccata aagcctctgt agacattatg      2400
     aacagcagat tgggaaaaaa gtactcctgg cacgcaattc gagggtccaa tttctaccac      2460
     tcggttgcgt tagggactat caacgaaatt ccatacgaga tcttacaact ggacaccgat      2520
     ctacccattg cagctatcaa aatctcgtgg cctttcccga tgtcaatcgt tagcttctat      2580
     cttcccaatg ggaaattaac gaatctaaag aaccgactga tcgatacctt cgataagata      2640
     cctgacccaa agatcatcct tggagacggc aacggtcacc acactacctg gggcagtcgc      2700
     gttaacaatg ccagaggttc cgcgattttt gaaaccgcaa ccgaaacagg attatgcatc      2760
     ctgaatgatg gctgtaaaac cttcatccgt ggtcgcgtag aaacatctat tgacatctcg      2820
     ctagcgtccc acaacatcat cgatcggttg ctttggtccg tggacaacga tctgtcgggg      2880
     agcgatcact tcccaatatg gatccaattg aactcatcac cgccaaaaac ctcccgtcga      2940
     cctcgctggc tttatgacca agccaactgg aaaatcttcc aagacagaat ggaggaaatt      3000
     ctggagtctt ctcctccgtc ttctatcgat catttctcga acagcattat cgaggccgct      3060
     acggcggcca ttccgaggac tagtcccaca cccgggcgaa gggccctttg ttggtggtct      3120
     gagaccacaa agaaagcggt caaagcaaga cgcaaagcac tccgcgcagc cagacgacta      3180
     ccggccgacc acccggagaa aattgccgcg atggaaaaat accgagacgc gaacaacaaa      3240
     tgcaagttta tcatccggga agccaaggaa aaatcgtgga cgagtttcct tgacgaaatc      3300
     aacgataacc agtcctccgc ggaattatgg agcagggtga acgccattca gggtaagcgc      3360
     caaaccagag gtctagtcct caaatccggt aaccagacga cccgggatcc aatccttgtc      3420
     gctgatgccc tggccgacta ctttggagac ctttcgtcct ttcatcgata cccgctcgac      3480
     tttcaaaaaa aacaccaacc cgccaatgcc gcctttgcta tgacacaagt gccaggtttc      3540
     cccgttcaga actttaacaa agaattttcc atggacgaac tcctctttgc cctgagcaag      3600
     tcaaaaggaa aatccgccgg tccggaccag attggctatc cgatgttgaa aaaattaccc      3660
     ccgataggaa aaagaaaggc actagaccta atcaacagcg aatggttagc cgggacccta      3720
     cccgacagct ggaagtgcag cctggtagtg ccgattccga aggcttgtgg tacaaactac      3780
     gaccccagcg attttcgccc aatagcctta acaagctgct tggcaaaaat gatggagcgc      3840
     atggcaaatc gcagactggt ggaatacctc gaaaaaaacg atcttctgga caaccgtcaa      3900
     cacgctttcc gggcaggttt cggcaccgga acctatttcg cggcccttgg ggacattctc      3960
     aatggagcat tagaaaggaa tgaacacgtt gaaatggcat ccctggactt ggcgaaggcc      4020
     tacaaccgag cctggacccc ggggatatta aagtgcctaa tggactgggg tgttactggg      4080
     aatcttgcca gcttcgttaa aaactttcta accaaccgtc gtttccgggt tagcatcggg      4140
     aatcatcaat ccaaagaaat ccccgaagaa accggtgttc cacagggatc ggttatcgcc      4200
     gttacgctgt ttctggtggg aatgaatggt gtcttccaat ccttgccgaa aggagtattc      4260
     gtgctggtct acgccgacga cattttgctg ctagtgacag gagtacaccc gaagatggtc      4320
     aggcgaaaat tgcaggcagc cgtaaatgca gtcgccaaat gggcaatcaa agtgggcttt      4380
     gaaatctcag caaccaaatg tgcaagactc cacatctgca attcgaaaca tcaaccacca      4440
     aaaaagccaa tcacggtcaa cggtactgcc attccaaaca agaaaaccgt taagatcgtt      4500
     ggcgtcaccc tcgatcgaca cctctccttc aaagcccact tcgataatgt ccgatcggca      4560
     tgcaagtccc gaatcaactt gctgaggctg atatccggca aaaggaaaag aagcgaccga      4620
     acgtccagaa tccgagttgc caacgcaatc gttaacagcc gattgcttta cgggatcgaa      4680
     ataacgagtc aacgcttcga cgaactgatc agcaacctag ggggaaccta caacaacgcg      4740
     atccggataa tctcgggaca tctgccttct acgccagccg actcggcctg tgccgaagcc      4800
     ggagtcttgc ctttccgata caaattggct aacagtattg gcagtagggc catctgtttc      4860
     ttggaaagaa ccaagaacga cggatcggaa gcctgtatcg aaatacaggc caaccagatc      4920
     cttaggtccg tggccggcat agagctccct tcggtatctg agcgacaccg taacggagcc      4980
     agaagctggt ctgccaggaa aataaaggtg gacaattatc tgaagcaaaa actcaagaaa      5040
     ggtggcaacc caaggctcgc acaagccctt ttcctggacc ggatcagaac aaagtacaga      5100
     atatacaacg ttcggtacac ggacgggtcg aaggctctcg ggaaagtggg gataggctgg      5160
     tgcggcatcg gctttcggga aagcaggagt cttcctagcc aatgctcggt cttctcggca      5220
     gaagctgctg ccatttttca agcaatcttg caaccgtcgg accttatcgg gccggtactc      5280
     atcgccaccg actcagctag cacaatcgca gcaatattat cggacactaa caagcaccct      5340
     tggattcagg agatacagga tgtgcttgat gacgaagaaa acatcacgct gatgtgggta      5400
     cccggtcaca gcggaattgc gggcaacgag gaagcggata ggtgtgccaa tacaggcaga      5460
     gacagcgagc gtctgaccga catcgtcccg agcgccgatc tcaaattgtg gctacgggaa      5520
     aaagttaacg acgcatggag gagaaagtgg cagagcgaaa ggaacctttt caccaggaag      5580
     attaaagggg acgttagaaa gtgggaagat cgtccagaca gaagggaaca agttatcctc      5640
     tcccgacttc gaacggggca tacacgagtc tctcactcga tgagtggcgg accgaatttc      5700
     cgaagaatct gcgagacttg ccaggttcac aactccgttg aacacttcct gtacacttgt      5760
     cctactctgg aactcctgag aaagcagtac gatatgggaa gcattcgcac gagcctacag      5820
     gacgatagat ccagcgaggc tgtgcttttc cgtttcctca aagatgccaa acttttcgac      5880
     gaaatctaac agattttttt tcatccagcc aacagaactc tagagttatt ggataaccca      5940
     agcgtaactg ggctccccaa gcacttaaac ttgggtggta agtcccacgt ctacgccagt      6000
     gaaaacgttg acctaccatt gaggcaataa aataccgtta ctgggcaccc tgagcaccca      6060
     aaactcaggt ggtaagtccc acgtctgcgg ctgtgttttt taaatgaagg aaactgactc      6120
     ccctgggcac cctaatcact tggtagataa gacccacgcc cgcatctaga aacaacgcaa      6180
     ttaaaaagca acaaaatatc gtaactgggc actctgagca ctcaaaacat agatggtaag      6240
     tcccacgtct gcgactttat caacaaactg aatgacccca ctcgtacaac aagaaagaaa      6300
     accggagcct gaaaagaaat aaaaatcatt aaattgggca taattaagct actttatacc      6360
     cgactcaccc caagctgtca gtcgatcccc cctccgacac gatacgtttt tggaggagag      6420
     aaacagcttc ccacataagg catatcgttt gcctgaatca gggatgctga caggatcaac      6480
     catctctccg aatccacact gctacccccg cggctgccgg tcgctcatcg gttcaatagc      6540
     tgattggtgg tcttctcccg cacccgtcgt agccggattt gccgcatact ccaaccttgg      6600
     gaaaaaggag tctcaaactt tccttcctca cacgacggca catcgaggat tttccgctga      6660
     aaggctggtg ggtgctcctt ctagcacccg ttgtactcct ttacgcggct catcacagag      6720
     acgaagggga aaaatccttt tttcccgtat acggtgttcc cacgacgaaa tcgggttcca      6780
     caagtccatc acggggctca ccagtcctcg gcggtttttg gacagaccca gaattggccg      6840
     aaacaagaga aaaattacgg acattacaac acaagaagag gaagcgcgtg aatgtcaaac      6900
     gttgggacat cacaaaacgg aacgcaagtt ccatgcaaga tgcaaaaagc ctcctcatta      6960
     gctaggaaaa tatgttgttt ctttgtttgt tcaattccaa tcttaacttg tagtattgtt      7020
     cctttcattt tacttgtttg tttgaatgtg ttaactgtaa ctagtaacgt taaatatgtg      7080
     aaaactttct attttttccg tctaggctag cccatctggc tagtatttta gtcgttaaaa      7140
     gtggtgaact cgccaagggc gaaaagccac tctaataaag ataaataata ataata          7196
//
ID   I_Ele16     repbase;    DNA;    INV; 6907 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele16.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6907
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6907
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           380..1708
FT                 /product="I_Ele16_1p"
FT                 /translation="MSGGSSGPYGGAVGLQPRRNKPDWMLSPNDLGQVMVL
FT                 VLRRKVNDTETSGQRTQDTPLPDTFIVGTSIELAVGTKEARALNATREGRG
FT                 SRYLLRASSANVIEKLSKMTELTDGTKIEIVPHPTLNTVQGIVFDADSINR
FT                 DEKSILEFLESQGVQAVRRIKKRVNGALRNTPLLVLSFRGTILPDHVYFGL
FT                 MRIKVRVYYPSPLLCFNCAAYGHSKKVCQQTTICLRCSTPHDVPEGEQCVN
FT                 PPNCLHCKTDHQVTSRDCPKFKEEEKIIRLKTDQGISFAEARRICAEETKK
FT                 QTFAGIIQNQMHQELAAKDQVIAALQKQVAVLTKELANLKKLLKPSAQNHS
FT                 PAPQEPRPSASSERSVSQTTQSVSNTDRLSRKDQSFISPPARRREIRKSNK
FT                 LDYDVQTRSRSGKRPIETSPTEVINNRGKRISAQPETGNKPTNIETNYG"
FT   CDS           1704..6794
FT                 /product="I_Ele16_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANNHQREFFTNFQNDDPAMEKDTQMEERISHLCRNN
FT                 VVSSLTSEEYDRINNHISKPSTSRTYFDSPSARPTTSTLIRDVPVQSEEPL
FT                 AAVDVVRPSPRASISSNYVCIKQSKFGFNSSKRGIDTITRPTVKNTMSPTG
FT                 KPRQGEGECIVTSPIPSMEEHIRWISNGDSHKRITLRVSSWNQRSNSTKTT
FT                 RPSIPYDSPSARPTTSTLTREVPEHSEEPLAAVDVVRPLSRASTSTNYIPK
FT                 KQFNLVTPQTKPDSGATIRPAVYSSISSTSVSHSTTNQGSTTTTVTTTKRL
FT                 RSPTFSDSQCSNPTKTTRPSIPYDSPSARPTTSTLTREVPEHSEEPLAAVD
FT                 VVCPLSRASIHSNSLQTKQFNPVIPPTNPGQEIHYHHRNNNNASPTSVARR
FT                 EGKSSVAYSSRTFLGTEEQGSMGEFRSCSWNQTEASHDVTCKSNAPPSTPR
FT                 NTRFSIDADSPRSSSQMNGINSPRSPSRASDDSEASSLTAQRTESSFAIQW
FT                 NICGLRTHLSELQILIKKYQPLVVCLQETNADYNRIAPSCLGKEYELLLSQ
FT                 SSTHGRQGAGMAIKNGTPFQRIWLQSNIQAVAVQLFAPTTITVVSVYLSPS
FT                 EKDAVKLFGDLLEELPKPILVLGDLNAHHAAWGSKITQPSSRAKTRGEGIL
FT                 DLVVRHNMVVLNNGSHTRIDPVTGASQALDVSICSTSHAAKFSWKTLLDYS
FT                 GSDHLPILLETYCNQFTSKCRSRWIFEKANWQLYEQLTTDSLRPGYTLSVD
FT                 EFTDRIITAAEASIPKTSGNIGQKSVVWWNPEVALAIKSRRKRLRALRRLG
FT                 DDDPQKIVALKQFQEARSHCRKAIHEAKQSSWDAFVESINPDTPASQVWNK
FT                 INKLQGKRQRNTISLNLETGHTNNGPTVANALADEYQQKSSDANYPERFRK
FT                 KHKKDKRTRCVTQRPNLHKRYNTDLTVEELMWALDRRVGSSTGPDNVSYQL
FT                 LQRLPFSGKTALLELFNRIWASGCFPAQWKIGTVIPIPKPGADRSKPEGYR
FT                 PITLLSCLGKLFERIINRRLMTELESTGKLDSRQHAFRAGKGVDSHFAKLE
FT                 SIINLQNDEHVEIISLDISKAYDTTYRPEILHTLTKWRVTGRLMNIISSFL
FT                 TDRFFRVAANGSLSSLRRAENGVPQGSILSVTLFLVAMQPIFNAIPGDTEI
FT                 LLYADDVILIVKGKNHVTIRSKLRKAVAAAVEWSSNIGFTIAPTKSKLLHI
FT                 CHLKHRKRGKAIKIGSNPIPHTRYMKVLGVLLDCKLNFLKHLTSVKQSCRK
FT                 RLNIIRILGYRLKRSSRSSLLKVGSALILSKLYFGIGLTSINFDAMQCTLE
FT                 PIYNDVARQASGAFQTSPITSIMAETGWTDFYSALIQRLCVLAVRLAEKNE
FT                 EANDYPVVQRARRLVLEKTGWSFPKIHETLRSSDREWYVPPPNIDNELKRT
FT                 IRAGTNHSVAVQKYKELVNVRYRTHEQIFTDGSKYGDQTGAGIVMNDSHFS
FT                 YRLPDTCSVFSAEAFALMMAVSKLNGQAKNIILTDSASCLEALAGGRSKHP
FT                 WIQAIERKIVGQNVTFSWIPGHSSIAGNEAADQLAKQGRHQPLQDIPLPAQ
FT                 DVVREIKRRIWTQWESQWHQQRCVLRSIKPTPGKYPDRKNPSEQRVLTRIR
FT                 IGHTRLTHAYLMDHNDPPNCRHCGVQLTVEHILVECRGLQSNRKNCGINGS
FT                 LAEILAYNTESEKAVIKFLKECNLFTKI"
XX
SQ   Sequence 6907 BP; 2214 A; 1728 C; 1427 G; 1537 T; 1 other;
     cacatcgtac tcgggatacg aaagtacaac aataagtgca aatcgctccg attttatcac        60
     caagttgtat ctaagttacc gctcgaaaat accaccatta gtggtcacgt gaaagttcta       120
     cttacagtgt acctctgtga agtgaagttc tggtgaatcg agccgaaaag tcgattaata       180
     aacagtgaac tgattgtgaa aatatcacgc ggtgtgaccc ttcacccata catacgttgt       240
     tgcgatagtg agaacagaac acattgtccc gatcggctag ttgtcccaaa acggaaactt       300
     ttttgatagt tcgatcgctt tcatcttcat ttcgaaaact gaacccgata cctaaccagt       360
     gagtgattga cccggacaaa tgtccggagg ctcctctggc ccctacgggg gcgcagtagg       420
     attacagcct agaagaaaca agcccgactg gatgcttagt cctaatgatt tgggccaagt       480
     gatggtgtta gttcttcggc gaaaagtgaa tgacacggaa accagcggtc aaagaactca       540
     ggatacacct ctgccggaca ctttcattgt gggaacctca attgaattag ctgtgggtac       600
     aaaagaagct agagcactca atgcaacccg cgaaggtcgt gggtcgcgtt acctactgcg       660
     tgccagttct gccaatgtca tagaaaagct gtccaaaatg actgagttga ctgacggcac       720
     gaaaattgag attgtgcccc atccaacact taatacggta caaggaatcg tgtttgatgc       780
     agattccata aacagagatg agaaatcaat cctggagttt ttggaatcac aaggtgtgca       840
     agctgtgcga agaataaaaa aacgagtgaa tggagcattg agaaacactc cattgcttgt       900
     tctttcgttc cgtggtacaa ttcttccgga tcatgtgtac ttcggcctca tgcgaatcaa       960
     agtgcgtgtt tactaccctt ctcccctgct ttgcttcaat tgcgctgcat atggtcactc      1020
     gaaaaaagtt tgccaacaaa ccacaatctg cttgcgatgc tcaaccccac atgacgtacc      1080
     agaaggagag cagtgtgtta atccacccaa ctgccttcac tgtaaaacgg atcaccaagt      1140
     cacgtcacgt gactgcccga aattcaaaga ggaagagaag atcattcgac tcaaaactga      1200
     tcaaggaatt tccttcgctg aagccagacg catttgtgcc gaagaaacca aaaagcaaac      1260
     attcgctgga attatccaaa atcaaatgca tcaagaactg gccgcgaaag accaagtgat      1320
     agccgcactt caaaaacaag ttgccgtgct gaccaaggaa ctcgccaact tgaagaaatt      1380
     gttaaaacca tccgcacaaa accactcgcc agcaccccaa gagccacgac cttcagcttc      1440
     cagtgagaga tctgtatcac aaacaaccca atctgtttcc aataccgacc ggctatctcg      1500
     aaaggaccaa tccttcatct cgcctccggc ccgccggcga gagattcgca aaagcaacaa      1560
     actggattac gacgtccaaa ctcgtagtag aagcggaaaa aggcccatcg aaacgtcacc      1620
     caccgaagtc atcaacaacc ggggcaaacg tatatctgca caaccggaaa caggcaataa      1680
     acccactaac atcgagacga attatggcta ataatcacca aagagagttt ttcacgaatt      1740
     ttcaaaacga cgaccccgct atggaaaagg acacgcaaat ggaagaacga atttcacatc      1800
     tctgcagaaa caacgttgtt tcttcgctta cttctgaaga atacgataga attaacaatc      1860
     atattagcaa accatcaact agcagaacct attttgattc gccaagcgcg aggcctacca      1920
     cgtcgaccct gatcagagat gtcccggtac aatccgaaga gcctctggcg gcagtcgacg      1980
     tggtccgccc atcccctcgg gcaagtatct cttcaaatta tgtatgtata aaacagtcca      2040
     aattcggttt taattcctcc aaacgaggca tagacacaat caccagaccg acagtaaaga      2100
     acactatgtc gccaaccggc aaacctcgac aaggagaggg agagtgtatt gttacctccc      2160
     ccattccaag catggaagag catatccggt ggatatcgaa tggggacagc cacaaacgca      2220
     ttacactgcg tgtgtcctcc tggaatcaac gcagcaactc aactaagaca acaagaccat      2280
     caataccata tgattcgcca agcgcgaggc ctaccacgtc gaccctgacc agagaagtcc      2340
     cggaacattc cgaagagcct ctggcggcag tcgacgtggt ccgcccgcta tcccgggcaa      2400
     gtacctccac taattatata cctaaaaaac agttcaacct tgttacccct caaaccaaac      2460
     cagactcagg agcaaccatc agaccggcag tgtacagcag catatcgtcc actagcgtat      2520
     cccacagcac aaccaaccaa ggcagcacaa caacaaccgt aactacaaca aaaagactaa      2580
     gatccccaac gttttccgat tcgcaatgca gcaacccaac taagacaaca agaccatcaa      2640
     taccatatga ttcgccaagc gcgaggccta ccacgtcgac cctgaccaga gaagttccgg      2700
     aacattccga agagcctctg gcggcagtcg acgtggtctg cccgctatcc cgggcaagta      2760
     ttcattcaaa ttccttacaa acaaaacagt tcaacccagt tatacctccc accaacccag      2820
     gtcaagaaat ccactaccat catcgaaaca acaacaacgc atcgcctacc agcgtggctc      2880
     gacgagaagg aaaaagttct gtagcatact ccagccgtac atttctgggg acggaagaac      2940
     aaggaagtat gggtgagttc cgatcatgct cctggaatca aaccgaggca agccatgacg      3000
     tcacatgcaa atccaatgca cctccatcaa ccccaagaaa caccaggttc tcaatagacg      3060
     ctgactcacc ccgttcctcg agtcaaatga acggcatcaa ctcgccacga tcgccgtcac      3120
     gagcttcgga tgactcagaa gccagtagtc taacagcaca aagaaccgaa tcgtcatttg      3180
     ccattcagtg gaatatctgt gggctccgca ctcatctgtc tgaactgcag attctaataa      3240
     aaaaatatca gcctttggta gtgtgcctac aggaaactaa tgctgactac aatagaattg      3300
     cacctagctg cctaggaaag gaatatgaac tgcttctgag ccaaagctct acacatggaa      3360
     gacaaggcgc cggaatggcc ataaaaaatg gcaccccttt ccagagaata tggctccaat      3420
     ccaacattca agccgtagct gttcaactat tcgcgccaac aacaatcaca gtggtttcgg      3480
     tatacctttc accttcggag aaagatgcag taaagttgtt tggagatctt ttggaagaac      3540
     ttccaaaacc cattcttgta ttgggggatc tgaatgctca tcatgccgca tggggcagca      3600
     aaataactca accatcatcg agagctaaaa ctagaggcga aggtatttta gacctagttg      3660
     tacgtcacaa catggtggta ctcaacaatg gatcgcacac tcgtatcgac ccagtcacag      3720
     gagcatccca ggccttagac gtctccattt gcagcacttc acatgcagcc aaattcagct      3780
     ggaaaacact actagactat tcaggaagcg accatctacc tattctcctc gaaacgtact      3840
     gtaatcaatt tacctctaaa tgccggagca gatggatctt cgaaaaagct aactggcaac      3900
     tatacgaaca gctaacaact gattcactac gccctggata tactctatcg gtagacgaat      3960
     ttactgatag gattataact gctgctgaag caagcattcc taaaacttca ggaaacatcg      4020
     gacaaaaatc tgttgtttgg tggaatccag aagtggccct agcaataaaa tccaggagaa      4080
     aacgcctacg ggccctccgt cgtctgggtg atgatgatcc acaaaaaatc gtcgctctta      4140
     aacaattcca ggaagctcgg tcacattgcc gaaaagctat ccatgaagcc aaacaaagta      4200
     gttgggacgc cttcgtcgaa agcataaacc cagatactcc agctagtcag gtttggaata      4260
     aaattaacaa gctacagggc aaacggcaac gcaatacaat atcgttgaat ctggaaactg      4320
     gacacaccaa caacggtcca acggtagcta atgctcttgc tgatgaatat cagcagaagt      4380
     cgtctgatgc aaactaccct gaaagattcc gaaaaaagca caaaaaagat aagcgcacga      4440
     ggtgcgtaac tcaacgtccc aatcttcaca aaagatataa cacggatttg actgtggaag      4500
     agctgatgtg ggcactcgac cgacgcgttg gatcttctac tggccctgac aatgtaagct      4560
     accaattact ccaaaggcta cctttttcgg gaaaaactgc ccttctagaa ctatttaacc      4620
     gtatctgggc cagcgggtgc ttccctgcgc agtggaaaat tggtactgtw atccccattc      4680
     cgaaacctgg tgcggatcgc agcaagcctg agggttacag gccgataaca ctcttaagtt      4740
     gcctcggaaa attgttcgaa aggattataa accgccgtct tatgacagag ctagaatcca      4800
     ctggcaaact agactctcga caacacgctt ttcgtgctgg gaaaggagtc gattcccact      4860
     ttgccaaact ggagtctata atcaatctcc aaaacgacga acacgtcgag atcatatctc      4920
     ttgacatatc aaaagcatat gatacaacgt atagaccaga aatccttcac actctgacaa      4980
     aatggagggt tacagggaga ctgatgaata tcatttctag cttccttact gacagattct      5040
     tccgggtagc tgctaacgga tcactgtcaa gccttagaag agcggaaaac ggagttccac      5100
     aagggtcaat tttgtctgtc acactattct tagtagctat gcaaccaatt ttcaacgcta      5160
     tacctggtga cactgaaatt ctactctacg cagatgacgt cattctgatt gtcaagggta      5220
     aaaaccatgt cacaattcgc agtaaattga gaaaagcggt tgcagctgct gtcgaatggt      5280
     cttcgaatat aggttttact attgctccta caaaatcaaa gctactacat atctgccacc      5340
     taaagcatcg aaaacgtggt aaggcgatca agattggttc taacccaatc cctcacacaa      5400
     ggtacatgaa agttctcgga gttctactgg actgcaagct caactttctg aaacacctta      5460
     catccgttaa acaaagctgc cgaaaaaggc tgaacatcat acgcattctt ggataccgat      5520
     taaaaagaag tagccgatcc agcttactga aagtaggatc agccttgatc ttgtccaaac      5580
     tttattttgg aataggactt acgagcatta acttcgatgc tatgcaatgc actttagaac      5640
     caatatataa cgatgtggct cgacaggcat ctggagcatt ccaaactagc cctataacat      5700
     ctattatggc tgagactgga tggaccgact tctactcagc cttgattcaa cgcctatgcg      5760
     ttttggctgt tcgactagct gaaaaaaatg aagaagcgaa cgactacccc gtagtgcaaa      5820
     gggcaagaag actcgttctg gaaaaaacgg gatggtcttt tccaaaaatt catgaaactc      5880
     ttagatcctc cgatagagaa tggtacgttc caccaccaaa cattgataac gagctcaagc      5940
     gcaccataag ggctggaaca aaccacagcg ttgccgttca aaagtacaaa gaacttgtca      6000
     acgtccgata tcgtactcac gaacaaatat tcacggatgg atcaaaatat ggtgatcaaa      6060
     caggcgcagg aatagttatg aacgacagtc actttagcta ccggttacct gacacatgta      6120
     gtgtgttttc cgctgaagcg tttgcactaa tgatggcagt atcgaagctg aatggccaag      6180
     cgaaaaacat catactgacc gactcagcca gctgcctgga ggcactcgcc ggtggtcgat      6240
     ctaagcatcc ctggatacaa gctattgaga gaaaaatagt aggacaaaat gtaacattca      6300
     gctggatccc tggtcactcc agtattgctg ggaatgaggc agccgatcaa ctagccaaac      6360
     aaggtagaca tcaaccactt caggacatcc cgttacctgc acaagacgtt gtacgagaaa      6420
     tcaaaagaag aatttggaca caatgggaat cacaatggca tcaacaacgt tgcgtactta      6480
     ggtcaatcaa accgacacct ggaaaatatc cggataggaa gaacccctcc gagcaacgag      6540
     tcttgactcg catccgaata ggtcacacaa ggctcacaca tgcgtaccta atggatcata      6600
     acgaccctcc caactgcagg cactgtggag tgcaactcac ggtggagcac atattggtcg      6660
     aatgtagagg actccaatca aacaggaaaa actgcggtat caacggttca ctggccgaaa      6720
     tactggcgta caatacagaa tccgaaaaag cagtgataaa atttcttaag gaatgtaatc      6780
     tctttacaaa aatttaacta actttgtgat tatatatatg tgtaatagta ataataatta      6840
     atcagacacg aatgccatga caaatggtaa agtgtcttaa ataaaacata ataataataa      6900
     taataat                                                                6907
//
ID   I_Ele17     repbase;    DNA;    INV; 6431 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele17.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6431
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6431
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (26-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           341..1816
FT                 /product="I_Ele17_1p"
FT                 /translation="MALAPDEFPSFGDPGGGSSNFFDGDFAGARLPNYMDP
FT                 EGTYGAIQVLRMEATSGRLPNDPFLLRSSVEKCVGAKIDGAFPEGKDGITY
FT                 ALKIRSKNQISKLLRLTSLSDGTGIKIIEHPTLNVCRCVVNCQSVAGLDDK
FT                 TIEEGLADQGVRNIRRITRRNGDKVENTSTIVLTISGTVIPPNVDFGWIRC
FT                 KTRPYYPAPMLCYNCWNFGHTSKRCQQTRPTCGTCSKDHVIDKETRCTAEV
FT                 FCKRCDRHSHSLSSRKCPVYCKENDIQRIRVDLGISYPQARRRYEQAHGQS
FT                 SFSNVTTAGKDQQIAELSSKVDQLQQEMEKKDRRIVTLESSLSTDNSSMIA
FT                 DLLQKVDLLTSEMKRKDDRIQALESDLQNNSRMGLVRKHGTIEELVSKVTH
FT                 LEEQLSHKEREVNVLRTIFNRKNQLADSKDALSSSEIPSTQDRIQTAEKTK
FT                 QQLSQKKEKKQKKKEWQPTLMYESDTSPIPPRQKNFGENTKERSLYD"
FT   CDS           1930..6171
FT                 /product="I_Ele17_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="NTLQPTSAPHTTCSIIEYSKSLIPIIDCNSVHNSALN
FT                 TREEPTGTISTLNTTKPEQRCIEVNKADNRKCSDMPTCSPVIFQDSRGPVG
FT                 AEATPPPEPADNLRHPGSSGRGTHKGRNAYPPVDNVGVKTTSTSTSFVNGT
FT                 HKGIRTRPPLKDNVGAAVTQDNPVSSPSSETPSAKTISSSSTTSSPRRNRT
FT                 TTSTNSGSPNSMATINATKRTSFVLQWNMNGFHNNISDLECLIQSNPPVIL
FT                 AIQEVHRTTVDKMNRSLGGRYRWTYKRNSNVYHSVAIGVLESIQFSTIQLD
FT                 TILPIVAVTLNDPFPVTVVSVYLPCGKIPNLKNAFSQVLESIQGPKLILGD
FT                 INGHHAAWGSPRSDKRGETLLELTEAMDLVILNDGSITFTKGQHESAVDVS
FT                 LASPSIVSRLLWSIGDDPLGSDHHPITISLCQLPPETTRRPRWIYDQADWT
FT                 SFQTAIDEYLCISEHNNLQDFIQAIYQAATTCIPRTSAKPGRKALPWWSPE
FT                 TKQATKARRKALRAAKRLPVDHPDKESAISLYKIKRNECRQVIRDAKDQSW
FT                 ENFLDGINSNQSSSEIWGKVNALSGKRKTRGMAIRHEGVITRDPGIIADAL
FT                 GYYFASLSAFDKYSDNFIRQNQATVDDLDRIQIPDDTAGLPINEPFRLIEL
FT                 EMALAKCKGKSAGADEIGYPMLKNLTPRGKVTLLRLLNKEWSGNTLPQEWK
FT                 SSLVIPLPKNGSSTSAPEDFRPISLTCCISKVMERMVNRRLTHFLESNELL
FT                 DHRQHAFRSGHGTGTYFATLAQVLSDAKTKDQHVELAALDLAKAYNRAWTP
FT                 GVIQQLNKWGLSGHILHFLRNFLQNRTFQVCIGNHRSKHFSEQTGVPQGSV
FT                 IAVTIFLVAMNDIFTSLPKEIYIFVYADDIMLIAVGSTEKALRRKLQASVN
FT                 AVAKWATKSGFVISTDKSAIMHLCKASHRPIRSIVSANGLPIPLKKSVRVL
FT                 GINIDRHLTFHDHFKKVKQSCKTRLNLLRILSKRHKMANRDVRLRVASAIL
FT                 DSRLLYGIELTCLSTDALTTTLAPVYHQSIRIISGLLPSTPADAACVESGR
FT                 LPFERLVTETVCKRAVSFLEKTTPCSGGVLLLDEANRLLQVHANKVLPPVA
FT                 ETHWNGARSWNSPRLKVEMSIKTRFRAGANSQAVTTSVAELLGSKYQNYTH
FT                 RYTDGSKVQDKVGMGITDHENSRFYRLPDPCSIFSAEAAAVLIACTIPSPN
FT                 PIAILTDSASVVTALSSDVARHPWIQAIQMQAPPETVFIWIPGHCGIRGNV
FT                 EADRLAASGRSATFYTRKVPGHDIRRWISSSLRSSWAVSWHNMRTPFLRKI
FT                 KNDISRWEDPKKHRDQRILSRLRTGHTKVSHNMGSDGPFRKICSACNVPNT
FT                 VEHFLINCPQYLAARASHGIAESIRSALNNDSDSIIRLMNYLKHIDLYHQI
FT                 "
XX
SQ   Sequence 6431 BP; 1955 A; 1622 C; 1376 G; 1478 T; 0 other;
     gagacgaaca gacgtttttg caacacgcgg gattgtttac atccaaataa caatagtttt        60
     cgagtttaat caagtttttc attatcgcgg cctatttcgg agccaatttc acgaccatcc       120
     ggataccgaa ctaaaagttt tttcccgtgg tcagacaacc gcgtctttcg gacgcgacac       180
     gagcgatttt caagggacat cgcccacaaa atctgacagt gttttcgtag tgagtgcgcg       240
     ataccgtata gtggagctac actgatctgt tgcctgcggt gccaacaagg agctcagagc       300
     tgaggctgtt ttcataaaaa caacccccgg gtggccaacc atggcgttgg caccggatga       360
     atttccctcc ttcggggacc ctggaggagg ttcatccaat tttttcgatg gcgactttgc       420
     tggagcacga ctgccgaatt acatggatcc cgaaggcaca tatggagcaa tccaggttct       480
     gcgcatggaa gcaactagcg gaagattacc gaatgaccct ttcctattac gctcatcggt       540
     ggagaaatgt gtgggtgcta aaattgacgg tgctttcccg gaagggaaag atggcataac       600
     ctacgctttg aaaattcgta gcaaaaatca gatctcaaag ctcctgagac tgacttcgct       660
     atctgacgga accggaatca aaattattga acacccgacc ctcaatgtct gccgttgcgt       720
     cgtaaattgc cagtcggttg ccggccttga cgataaaacg attgaagaag gcctagctga       780
     ccagggagtt cgcaacattc gccgtatcac cagacgaaac ggagacaaag tcgaaaacac       840
     gtcaacaatt gttcttacga tcagtggaac ggtgatcccc ccaaacgtgg atttcggttg       900
     gatacggtgc aaaacccgac cgtactatcc agcaccaatg ttgtgctata attgctggaa       960
     tttcgggcac accagtaagc gttgccaaca aacacgtcca acttgtggaa catgctctaa      1020
     ggaccacgtc atcgataaag aaacccgctg cacagctgaa gttttttgca aacgttgtga      1080
     caggcacagc cactccttgt caagccgtaa atgcccggta tactgcaaag aaaatgatat      1140
     ccaaaggatc cgagttgatc ttggtatatc atacccgcaa gcgaggagac gatacgaaca      1200
     ggcacacggg caaagtagtt tctcaaatgt aactacagcc ggaaaggatc agcaaatcgc      1260
     tgagttatcc tcaaaggtgg accagctcca gcaggagatg gaaaagaagg atagaagaat      1320
     cgtgactctc gaatctagcc taagcaccga caacagtagc atgattgcgg atctactgca      1380
     aaaggtagac ttgctgacca gcgaaatgaa gagaaaagat gatcgcatcc aggcacttga      1440
     atcggatctg cagaacaatt cgcgcatggg attggttcga aaacacggca ccattgagga      1500
     actagtttct aaggttaccc atttggaaga gcagctcagc cacaaagagc gagaagtgaa      1560
     cgtgctccga accattttca atcggaaaaa tcaactggct gattccaagg atgctctttc      1620
     atctagcgaa ataccgtcaa cacaagatcg aatccagact gcagaaaaaa cgaagcaaca      1680
     actctcccaa aaaaaagaaa agaagcagaa gaaaaaagaa tggcagccga ccctgatgta      1740
     tgaaagcgac accagcccaa taccacctcg tcaaaaaaat ttcggagaga acaccaaaga      1800
     gagatcactc tacgactgat tccgatgact ccttcgatcg gccaaaaaca aaaataacta      1860
     cccctgatag cgatttctat gccaacgtct ccccattggg tggtgacgag ggcatgtcag      1920
     aatgattaaa acacgcttca accaaccagt gctcctcata caacatgcag tataattgag      1980
     tacagcaagt ctctaatccc aatcatcgat tgtaattctg tccataatag cgcgctaaac      2040
     acaagagagg agcctactgg taccatttca acgctaaata ccaccaaacc cgaacaaaga      2100
     tgtatcgaag tcaacaaggc cgataaccgt aaatgcagcg acatgccaac gtgttccccg      2160
     gttatctttc aggacagtcg aggccccgtc ggtgcggaag ccacaccacc accggaaccg      2220
     gcggacaacc ttcgtcatcc tggaagttcc ggaagaggga cgcacaaggg cagaaatgcc      2280
     tatccccctg tggacaacgt gggagtcaag actacatcaa cctcaacatc ttttgtcaac      2340
     gggacgcaca agggtattcg tactcgtccc ccgttaaagg acaacgttgg agcagcagta      2400
     acccaagata accctgtgtc ctccccatct tccgaaactc cgtctgccaa aacgattagc      2460
     tcatcatcaa ctacatcatc accaagaagg aacagaacga caacttcgac aaatagtgga      2520
     tctccaaaca gcatggccac catcaacgct accaaacgga cctctttcgt tttacaatgg      2580
     aatatgaacg gattccataa taacatcagc gacctagaat gccttataca aagcaaccca      2640
     ccagttatcc tggctatcca agaagttcac cgtaccaccg tggataaaat gaaccgatcg      2700
     cttggcggtc gctaccgttg gacatacaaa aggaattcaa atgtttacca ctcagttgcc      2760
     attggagtac tagaatccat tcagttctct acaatacaat tagatacaat ccttcccatc      2820
     gttgccgtta cgcttaatga tccgtttcca gtaacggtgg ttagtgttta tctgccatgc      2880
     ggcaaaatac caaatttgaa aaatgccttt tcacaagttt tggaatctat acaaggccca      2940
     aaactgattc tcggcgatat caacggtcat catgctgcat ggggaagccc tagatcagac      3000
     aagcgagggg aaaccttact tgagctcaca gaagctatgg acctggtaat actcaacgat      3060
     ggctccatca cgttcactaa gggtcaacac gagtccgctg ttgatgtatc gctagcaagc      3120
     cctagcatag tcagtcgatt actctggagt attggcgacg acccgctcgg cagcgatcac      3180
     catccaatca ctatctcact ttgccaatta cctccggaga caacgcgccg ccctcgatgg      3240
     atatacgatc aagcggattg gacctccttc caaacagcaa tcgacgaata tctctgcatc      3300
     tccgaacata acaatcttca agacttcata caagctattt atcaggctgc cacaacatgt      3360
     attccaagga ctagcgcaaa acccggccgc aaagctttgc cctggtggtc cccggagaca      3420
     aaacaagcaa caaaagcaag gagaaaggcg ttacgagctg cgaagcgtct gcctgtagat      3480
     caccctgaca aagagtcagc catttcgtta tataaaatca aacggaatga atgtcgacag      3540
     gttattcgag acgcgaaaga tcagagttgg gaaaatttct tagatggaat aaattccaat      3600
     caatcttcat ctgagatatg gggaaaagtt aatgctctca gtggaaagcg caaaacccgc      3660
     ggcatggcta tccgccatga gggggttatt accagagatc ctggtatcat cgctgatgca      3720
     ctaggctatt attttgcatc cctgtcagca ttcgacaaat acagcgacaa cttcatccgc      3780
     caaaatcaag ccaccgtaga cgatctcgat agaatacaaa ttcctgatga cactgcaggc      3840
     ctacccatta acgaaccttt ccgtctaatt gagctcgaaa tggctttagc caaatgtaaa      3900
     ggtaaatccg caggtgcgga cgagataggc taccccatgc taaaaaacct tacacctaga      3960
     ggaaaagtta ccctccttcg actgctaaat aaggagtggt caggaaacac cctaccacaa      4020
     gaatggaaga gtagcttggt gatccccctt ccgaaaaatg gatcttctac ctctgcacct      4080
     gaagattttc gtccgatctc cttaacatgt tgtatcagca aggtaatgga gagaatggta      4140
     aaccggcgac taacccactt cctagaatcc aatgaactcc tcgatcacag gcagcacgcc      4200
     tttcgttccg gccacggcac aggtacgtac tttgctactc tggcgcaagt tctaagcgac      4260
     gccaaaacta aagatcagca cgtcgaactc gccgcattag atttggcgaa agcatacaac      4320
     cgcgcctgga cacctggagt cattcaacag ctcaacaaat ggggtctatc aggtcacatt      4380
     ttgcatttcc tgcgaaattt tctccagaat agaacttttc aagtttgtat tggaaatcat      4440
     cgttccaaac acttttcgga acaaactggc gtgccacaag gctcagttat agccgtcacc      4500
     atcttcttgg tggcgatgaa tgatatattc acgagcctcc caaaggaaat ttacattttc      4560
     gtctatgcgg acgacattat gctcatcgct gtaggatcaa ctgaaaaggc cctccgccga      4620
     aaactacagg catccgtgaa cgcagtggcc aaatgggcaa ctaagtcggg ctttgtaata      4680
     tcgaccgata aaagtgccat tatgcatctg tgtaaagcgt ctcaccgtcc aatccgttca      4740
     atagtttcag caaatggcct gccaatccct ttgaaaaaat cagtgagggt tctaggaatt      4800
     aacatagatc gccatctgac tttccacgat cactttaaga aagtgaaaca gagctgtaaa      4860
     actcggttga acctcctacg aattttatcc aagcgccaca aaatggctaa tcgtgatgta      4920
     cgtcttcggg tagccagtgc aattctagac agcagactcc tctacggaat tgaactaaca      4980
     tgtttatcaa cagatgcact aacaaccacg cttgcccctg tgtatcacca atcaatccgt      5040
     atcatttccg ggttgttgcc gtctacacct gctgatgccg cgtgcgtaga aagcggcagg      5100
     cttcctttcg aacgcttagt tacggagacg gtatgcaaac gggcagtaag ttttctagaa      5160
     aagacgacac catgcagtgg tggagttctt ctccttgatg aggcgaaccg actcctccaa      5220
     gtacacgcca acaaagtgct ccctccagtg gcggaaactc attggaatgg agccaggagt      5280
     tggaattcgc cacgtctcaa ggtggaaatg tcaataaaaa ctcgttttag agctggtgca      5340
     aactcccagg cggtgacgac tagtgtagct gagcttcttg gtagtaaata tcaaaactat      5400
     acacaccgct acacggacgg ttccaaagta caggacaaag taggcatggg tattaccgac      5460
     catgagaaca gccgtttcta tcgtcttcct gatccatgtt ctattttctc cgcggaagcc      5520
     gcggctgtcc taatcgcttg cactatccca tcaccaaatc caattgccat actgactgat      5580
     tcagccagtg tcgtcacagc cttatcatcc gatgtagcac gacatccttg gattcaggca      5640
     atccaaatgc aagcacctcc tgaaacggta tttatatgga ttcctggcca ctgtggaata      5700
     cgtggaaatg tggaagcaga ccggcttgca gcatctggta gaagcgctac gttttacaca      5760
     agaaaagttc ctggacatga tataagacga tggatctcct catctttaag aagttcttgg      5820
     gcagtgagtt ggcacaatat gcgaacacct ttcctgcgaa aaattaaaaa cgatatatca      5880
     cgctgggaag acccaaaaaa gcatcgcgac cagaggatcc tctctagatt gagaactggg      5940
     cacaccaaag tttcgcataa catggggtct gacggaccct ttagaaaaat ctgttctgca      6000
     tgtaatgttc caaacactgt agaacacttt ctcataaact gcccgcaata cctagcggca      6060
     cgagcatcac atggcattgc tgaaagcatt cgctccgcgc tcaataacga ctccgatagc      6120
     ataattcggc tgatgaatta cctaaaacac atcgatctgt accaccaaat ctgataatca      6180
     tctctctcca atcaactgga cctcgcatcg aaacctgaca acgagaaagg aaaattgtat      6240
     ttcaacatca cactagaaca tttaaattaa tcaactttta aagctttgtc ttcaaattga      6300
     aaccaactat gtaatactaa tgtgatttat agttagccca ggggagccac tcactatgac      6360
     gctctctcgt acggagatga accagccata gggctgaaaa tctccttaat aaagataata      6420
     ataataataa t                                                           6431
//
ID   I_Ele18     repbase;    DNA;    INV; 6817 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele18.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6817
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6817
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 14
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           404..2092
FT                 /product="I_Ele18_1p"
FT                 /translation="MSDQDQFPPFDDPGGGPSDDSARNIIHGSYAGRTVPT
FT                 WLDPSDEHGKLTVLKLEGENGPLPSKPFLLRTSVEKWIGGKIEGAFRENRG
FT                 ISYALKVRNPKQVEKLMAMKTLADGTKVKISKHPVLNKSRCVVSCLDVKDA
FT                 SDDELMDCLAPQGVSEFRRIKRRTGKEQYENTASIILTIEGTVVPNHIDFG
FT                 WLRCKTRPYYPAPMVCYQCWSFGHTKKRCQQSQPTCGNCSQGHVTDETNRC
FT                 NTDPFCKRCNSASHSLSSRKCPTYVEENAIQRIRVDMGVTYHAAKQIFEQS
FT                 NSSRSFAAVTSASKDHTIADLSSKVDRLLQETAAKDKRIAALESASIGNTT
FT                 ENVGKAKLDQLIQKVNQLTKEIETKDQRILALEKAQHIGSRLDLVRQHGTI
FT                 EDLIEEVAALKGDLAKKERENLLLRELYGKKVNQNKRSTQNLNSLSPKSSD
FT                 SLFTQKSVQSLPSPDYEPIQSSNVSNDEVRKWLQTTAANNPVTDDRKYKNK
FT                 SKKPTASNENEPICTPSVAPVDKTSKRIHSSTDSDDSIGRSKTKINVKCPD
FT                 AIFVTSSDGDDETMQS"
FT   CDS           1995..6554
FT                 /product="I_Ele18_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTRLADLKLKSMSNAPTLYSSPLLMVMTKRCKVNHAY
FT                 DLPALLFTNIELILSISSKLPMTNTHYNRAAHSHKEESTGTPTTTNDTDIN
FT                 THENRTTCEASGSRGPCSAAVFSRPELQDSSRHSNFPTVFETQKGSTAYTP
FT                 QFPLYSSGSRGPVSAEVRPPPEPADTPRHFRSSGRGTDKGHATHSPKDTVG
FT                 AESLATNAQATTGSKNNQQSRRSARIRKRKSKISTPSADNENNLLSRIGLD
FT                 AASLAHDKTAPLPEAACNAAIYDAIHLLRYGIEIPQQSSSSYLPSKRISSV
FT                 EQQALTVSRCTPRRTTTDMRNSNTRFAVQWNINGFTNNLADLEIICKNNPP
FT                 IALALQEVHRTNCQRLDRSLSGKYRWIYKCASNIYHSVAIGILAQLSFTQI
FT                 ELNTDLPIIAVRLNAPFPISIVCFYLPCGNIANLEESLLNVWNEIPEPRIL
FT                 LGDCNGHHQIWGSPKSNPRGMTMVSVAESTGSTILNDGTKTFIRGQIESIV
FT                 DISMVSATIANRFLWSASDDPMGSDHFPITIYLNEQPPATSRRPRWIYDQA
FT                 DWASFQTRMDSMLEANEPSNISDLIDTIHQVASETIPKTSSIPGRKALPWW
FT                 SPEIKKIVKARRKALRRAKRIPDGNPQKEIAFSTYKILRNNCRQSIRDAKH
FT                 QSWTKFLDTINDQQTSAELWQKVNALNGKRSFAGLAINHQGVTTRDPSEIA
FT                 NILAEHFASMSAIGRYDHAFVRINNVTMDSLSSFRIPPESHHEINLPFSLA
FT                 ELNFALQHGKGKSAGPDEVGYPMLKYLSESGRSLLLRLLNNEWTRKTLPAN
FT                 WKHSIVVPIPKNSGYSNEPDSFRPISLTCCISKVLERMVNRRLIRYLEDGN
FT                 YLDHRQHAFRPCHGTDTYFASLGQVLDDALNDNNHIEIATLDLSKAYNRAW
FT                 TPSVLRQLANWGLSGNILHFIKNFLTGRTFQVLIGNHRSNVTGEETGVPQG
FT                 SVIAVTLFLVAMNSIFKSLPKGIFIFVYADDIVLIAVGKHPVALRRKLQAA
FT                 VNAVNKWAHSSGFQLSAEKSARSHICTFNHRPPKKAITIHNTPIPFKKSLR
FT                 ILGVRVDRRLTFNDHCSEVKRNCRTRLNLLKILSRPHTTNNRNTRLKISRA
FT                 TIESKLFYGSELTCRASDTLNRTLAPVYNNAIRIVSGLLPSTPAIAACVEA
FT                 GMPPFNYALVTAVCRKAVSFLEKTCKSQSEVFILKEANRLLISVANQRLPP
FT                 VAVIHWTGARNWRAPLPNVDLSIKNNFKAGDSSTILRSTFAHLLATKYAYH
FT                 TQRYTDGSKARGAVGIGILSGNQNFYHRLPNMCSIFSAEAAAIYLAASLPS
FT                 DDPIAIFTDSASVISALNSQSSRHPWIQAIQSILNINNNITFIWIPGHCGI
FT                 RGNESADQLAAIGRSNRNLYNREVPGSDVKKWVANTVRLAWSQEWHNRRNP
FT                 FIRKIKGETHKWEDVPKLKDQQILSRLRTGHTRLSHNMGGDTEFRRRCDPC
FT                 GVHNSVEHFICECPIFNYPRELYNIGSIRDALKNDPSSESATICFLKDAEL
FT                 YNNI"
XX
SQ   Sequence 6817 BP; 2066 A; 1724 C; 1396 G; 1630 T; 1 other;
     cagtcgacag ctcggtcttg tgccgaatag acgtcttttg ttatcgccgc gcgcgttatt        60
     ctttttgttt cgatttgttg acgtatatca actactaatt tcccaaattt ctccaacatc       120
     tcctaactga aataccagtg gtgtataaaa gatcagtatt taccgtgaca agcaactaga       180
     tactgtcctc gggggtttac tagcttggat tgtcggccct tcaccggggc ttgtaaacaa       240
     gcagatccat ctattgttgc tgtagtggct attgttttgt tgctgcagga gatatcggtt       300
     tcgtgtgaac ggtgtagttt tcgtcgcgag tgaacatttt tgcaagtcca acttaggcag       360
     ctgtccttgc tatcgttgaa cgctatcttt cggtcctccg actatgtcgg atcaggacca       420
     attccctccc tttgatgatc ccggaggagg cccctctgac gattctgcac gaaacattat       480
     ccacggttcc tacgcaggga gaaccgtccc tacgtggcta gatcccagtg atgaacatgg       540
     aaaactcacg gtactaaagc tggagggtga aaacggtccc ttaccaagca agccctttct       600
     cttacgcaca tctgtggaaa agtggattgg tggtaaaatc gaaggcgcgt ttcgtgaaaa       660
     ccgtggtatt tcttatgcgc tcaaggttcg aaatccaaaa caagttgaaa aactaatggc       720
     aatgaaaaca ttagctgacg gtacaaaggt taaaattagc aagcatcccg ttctcaacaa       780
     atccagatgt gttgttagct gcctggacgt caaagacgca agtgacgatg aattgatgga       840
     ctgtcttgct ccccaagggg tatccgaatt ccgcaggatc aaacgtagaa ctgggaaaga       900
     acaatacgaa aacaccgctt cgattatcct tactattgag ggaaccgtcg tacccaatca       960
     tattgatttt ggttggttac gatgtaagac aaggccatat tatccggctc cgatggtgtg      1020
     ctaccaatgt tggtcgtttg ggcataccaa gaaacgctgc caacaatcac aacccacctg      1080
     cggcaactgc tctcaaggac atgtgaccga cgaaaccaac agatgcaata cggatccgtt      1140
     ttgcaagaga tgtaattcag ctagccacag cttatccagc agaaaatgtc caacgtacgt      1200
     cgaagaaaat gcgatccaac gaatcagagt cgacatggga gtcacctacc acgcagccaa      1260
     acagatcttc gaacaatcca acagctcacg atcgtttgct gccgttactt cggcgagcaa      1320
     ggatcataca atcgcggatc tgtcttccaa agttgatcgt cttttgcagg aaacggcagc      1380
     caaagataaa cgaattgcgg cacttgaatc tgcatcgatt gggaatacaa cagaaaacgt      1440
     gggaaaagcc aaactcgacc aacttatcca gaaggtcaat caactaacga aggagattga      1500
     gactaaggat caacgaatcc tggctttgga gaaagcacaa catatcggat ctcgtcttga      1560
     tttggtccga caacatggaa caatagaaga tcttatcgaa gaagttgctg cattgaaggg      1620
     tgatttagca aaaaaagagc gagaaaatct actacttcgt gagctatatg ggaaaaaagt      1680
     gaatcaaaat aagcggagca cgcaaaatct caactccctt tctcctaaat cctcagactc      1740
     tctcttcact caaaaatcag ttcaatcgct accgtctccc gattacgaac caatccaatc      1800
     ctccaatgtt tccaacgacg aagtacgcaa atggttacaa acaactgcgg caaacaatcc      1860
     ggtgaccgac gatagaaaat acaagaataa gagcaaaaaa ccgacagcgt ctaatgagaa      1920
     cgaacccatt tgtacaccaa gcgtcgctcc agtagataag acgtcgaaga gaatccattc      1980
     gtcaaccgac tcggatgact cgattggcag atctaaaact aaaatcaatg tcaaatgccc      2040
     cgacgctata ttcgtcacct cttctgatgg tgatgacgaa acgatgcaaa gttaatcacg      2100
     cctacgatct tccagcactc ctcttcacga acatcgaact aatactatcg attagctcta      2160
     aattaccaat gactaatact cattacaata gagctgcgca ttcccataaa gaggagtcaa      2220
     ctggtacccc caccactacc aacgatactg acatcaacac acacgaaaac agaaccacgt      2280
     gtgaggcttc gggtagccgg ggcccctgca gtgcggccgt cttttcccga ccggaactac      2340
     aagactcctc tcgacattcc aactttccaa ccgtatttga aacgcaaaag ggttccacgg      2400
     cctatactcc acaattcccg ctatactcca gcggtagtcg aggccccgtc agtgcggaag      2460
     tccgaccccc accggaaccg gcggacaccc cccgacactt caggagtagc ggaagaggga      2520
     cggataaggg tcatgcaacc cattccccta aggacaccgt gggagctgaa tcacttgcaa      2580
     cgaacgctca agcaaccacc ggatccaaaa acaaccaaca atcaagacgc tcagcacgta      2640
     tcaggaagag gaaatctaaa atcagcactc catcagcgga caatgaaaat aacttgctta      2700
     gcaggattgg actggatgct gccagcttgg cacatgacaa aacggcacca ttaccggaag      2760
     cggcatgtaa tgctgctatt tacgacgcca ttcatctact tcgctatggc atcgaaatac      2820
     cccaacaaag cagctcttca tatctgccaa gtaagagaat ttcatccgtt gagcaacaag      2880
     cacttaccgt cagccgttgt acaccacgaa ggactaccac agatatgagg aactcgaaca      2940
     cccgcttcgc tgttcaatgg aacataaacg gtttcactaa caaccttgca gatttggaga      3000
     tcatatgtaa aaataaccca ccaattgccc tagcgctaca ggaagtccac cgcaccaact      3060
     gccagaggtt ggacagatcg ctctcaggca aatatcgctg gatttacaag tgtgcctcaa      3120
     acatttatca ttctgtagcc attggaatcc tagcacaact ttctttcact caaattgagc      3180
     taaacacaga cctcccaatc attgctgttc gmctcaatgc acctttcccc atttctatag      3240
     tatgcttcta tctcccctgt ggaaatatag caaaccttga agaatcactt ctgaatgtct      3300
     ggaacgaaat ccccgaacct aggattttgc ttggagactg taacggccat catcagatct      3360
     ggggtagtcc aaagtccaat cctcgaggca tgaccatggt atctgtggct gaatctactg      3420
     gatctaccat actcaacgac ggaacgaaaa cattcatcag aggccagatc gagtccatcg      3480
     tggatatatc catggttagt gctactattg caaaccgttt cttgtggagc gccagtgacg      3540
     atccaatggg aagcgatcat tttccaataa ccatctatct caatgagcaa ccaccagcaa      3600
     cttcacgtcg gccgcggtgg atttatgatc aggcggactg ggcatccttc caaacacgta      3660
     tggacagcat gctcgaggct aacgaaccaa gcaatatatc cgatttaatt gacaccatcc      3720
     atcaagtagc ctctgaaaca attcctaaaa ccagttcaat cccaggtcgc aaagccctcc      3780
     cctggtggtc accagaaatt aaaaaaatcg ttaaagccag gagaaaggcg cttaggagag      3840
     ccaaaagaat cccagatggc aacccacaga aagaaatcgc ctttagcaca tacaaaattt      3900
     tacgaaacaa ctgccgacag tctatcagag acgccaaaca tcagagctgg acgaaattcc      3960
     tcgatacaat caatgaccaa caaacctccg ccgaattgtg gcagaaagtg aacgctttaa      4020
     acggcaaacg cagcttcgca ggtcttgcaa tcaatcatca aggagtcact acgcgtgatc      4080
     cctccgagat agctaacatt ctagctgaac attttgccag catgtctgca attgggcgat      4140
     acgaccatgc tttcgttcgt atcaataatg ttaccatgga ctccctcagc agctttcgga      4200
     tccctcccga atctcatcat gagattaatc tccccttttc attggctgaa ctaaattttg      4260
     cacttcaaca tggaaaggga aaatccgccg ggccggacga ggtaggatac cctatgttga      4320
     aatatctctc tgaaagcggt cgatctcttc tactccggct gttaaataat gaatggacta      4380
     gaaaaaccct gccggccaat tggaaacata gtatagttgt tcctatccca aaaaactcgg      4440
     gctactctaa cgaaccagat agctttcggc caatttcttt aacatgttgc atctcgaaag      4500
     tgttagaacg aatggtgaac cgccggctga ttcgttacct cgaagatggc aattatctag      4560
     atcatcgcca acacgcgttt aggccttgcc acggaacaga tacttatttt gcctcgctag      4620
     ggcaggtttt agacgacgcc ctcaacgaca acaaccacat tgagattgca actctcgatc      4680
     tgtctaaagc ctataatcgc gcatggactc caagcgttct taggcagctg gcaaattggg      4740
     gcctctccgg caacatactc cactttatca aaaacttctt gactggtcga actttccaag      4800
     tcctcatagg caatcatcga tcgaacgtta ccggtgaaga gactggagtt cctcaaggct      4860
     ccgttatcgc ggtcactcta ttcctagttg ccatgaatag cattttcaaa tcattaccga      4920
     aaggaatatt tatttttgta tacgcggacg atattgtcct aatcgctgtt ggaaaacatc      4980
     cggtggcact cagaaggaaa ctacaagccg ctgtaaatgc agttaacaaa tgggcacatt      5040
     catcaggttt ccagctatca gcggaaaaaa gtgctaggtc tcacatctgc acttttaatc      5100
     accgtccacc gaaaaaggcc attactattc acaacacacc gataccgttc aaaaagtcac      5160
     tacgaatcct aggcgtccgt gtggatcgtc gacttacctt taacgatcac tgcagtgaag      5220
     taaaaaggaa ctgtaggacc aggttgaact tattgaagat tctttcaaga ccacatacga      5280
     cgaataaccg caatacgcgt ttaaaaatct ccagggccac tattgagagt aaactttttt      5340
     atggctctga gttaacatgc agagcttccg acacacttaa tagaacattg gctcctgtat      5400
     acaacaatgc catacggata gtttctggcc tactaccctc aaccccagcg atagcagcgt      5460
     gtgtcgaagc tggtatgcca ccatttaatt acgcgctggt caccgcagtg tgtagaaaag      5520
     cagtcagctt tctagaaaaa acctgtaaga gccaatctga agtcttcatc ctcaaggagg      5580
     ctaacagact tctaatatca gtggccaatc agagactccc tccagttgca gtaatccact      5640
     ggacaggagc aagaaattgg cgcgctcctt tacccaatgt cgatctttca atcaaaaaca      5700
     actttaaagc tggagatagc tccacgatac tgcgttcaac atttgcacat cttttggcca      5760
     caaaatacgc ttaccacaca cagcggtaca ccgatggatc aaaagcacgg ggcgcagtcg      5820
     gaatcggtat actcagtggg aaccaaaact tctatcatcg tctacctaac atgtgctcca      5880
     tattctctgc tgaggccgca gcaatatacc tagcagcttc cttaccgtcg gatgacccta      5940
     ttgctatttt cactgattct gctagtgtca tctcagcact caactcacag tcttctcgtc      6000
     acccatggat acaggcaatt caatcgattc tcaacataaa caacaatata accttcatct      6060
     ggataccggg gcactgcggt attcggggga atgaatctgc agaccagctg gctgccatag      6120
     gtcgttcgaa tagaaatctc tataaccgag aggtcccggg ttccgatgtg aaaaaatggg      6180
     tggccaatac agtacggttg gcttggtctc aagagtggca taatagacgt aaccctttca      6240
     tacgtaaaat aaaaggagaa acgcacaaat gggaggacgt acccaaactg aaagaccaac      6300
     aaatcttatc gagattgcgc actggtcata cgagattatc ccacaatatg ggaggtgata      6360
     ctgaattccg tagacgctgc gacccatgcg gggtgcataa ctcggtcgag catttcatat      6420
     gtgaatgtcc gatctttaat tatcctagag aactctataa catcggctca atacgggacg      6480
     ctttgaaaaa tgacccatct agtgaatccg ccacaatctg ttttttgaag gatgcagaac      6540
     tatataacaa catctgagat ctcgaaaacc cgacgacttc aagaaatcat cgagatatcc      6600
     agcactatcc tgtccaaccg ataactacgg ccccctcata caaaccatag tatgaatatt      6660
     ctgataatga taacaaatat gtgtaatgat attgtaaaac taaattgaaa tgtaatctac      6720
     ccaggagggc accttttgcc ctgttttttt ctcaaagagg tgaacccgcc taaggctgaa      6780
     agcctctata ataaagaaaa tcaaatcaat caaatca                               6817
//
ID   I_Ele19     repbase;    DNA;    INV; 6775 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele19.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6775
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6775
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           381..1724
FT                 /product="I_Ele19_1p"
FT                 /translation="MTDSSAGPFGGAAGLRRNKPDWMMDPNDLGQVMVLIL
FT                 RRKTDAADGQRVQDESLPDSIIVGTSIEIIIGKKAARALKATREGRGTRYL
FT                 LRTSSTEIIEKLTKMTELTDGTKIEIVPHPTLNTVQGIVYDPDTINKDEKS
FT                 ILEYLDSQGVHAVRRIQKRINGTLKNTPLLVLSFRGTILPEHVYFGLLRIQ
FT                 VRIYYPTPMLCFNCGCYGHSRKFCQQSAICLRCSAPHHVSEGEQCTNPPNC
FT                 LHCRTEHQVTSRECPKYREEEKIVRLKTDKGISFSEARRLCAQEAKSQTFS
FT                 GIVQEQIQQELAAKDQLIATLQKQVAVLTKELSALKKMLRPATQSQSPAPR
FT                 DRRPSLSNQKSSSLMAPPTQNSTQHSTDRPSRKDQPTTSPKAPRQEDRKTN
FT                 KSSGGIQTRSRSGKRHMEVSPTEAAHSRGKRMPSQLDTNTTFVDIEMNNGP
FT                 GPS"
FT   CDS           1708..6666
FT                 /product="I_Ele19_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDQGLHNKIRTVPYDYDSATIMDMKKEERNRPNTFDD
FT                 SRNSMDSDKRPTTTTNTSSNTVVTKLKFQTITSEEYDRMHNLIVVPSTSRT
FT                 SSYITTIDSPSARLTTPTLTEEVPEYSEEPSAAVGVVCPHLRASIPIHPIS
FT                 VKQPNPTFIPINTGFDTTLNSTTYSVWPTPLHAKSSESSAKVDSRKISYGT
FT                 KRNSGIFRSSSNSNFHHGSIHQHKTDLPARCTRLTATIDSPSARPTTLTLT
FT                 GDVPEQSEEPPAAVSVVCPHPWASITSNFIFEEPNTASVPIIPGFDARSRS
FT                 MESNSTSPTSVLQHSHGNVHQPAAIFDSPSARPSTSTLTREVPDPSEEPLA
FT                 AVDVACLQLSASIASFSPKDQSTATSLPTNTDLNIEVNSREVTTATTVPLQ
FT                 TSVEDSPAELDYSSYWNPIGTEFNNHIADLQSPLQTSTDSDSCVTETNENS
FT                 PTFAIQWNICGLRSHLSELQILLAKYQPVIVCLQETNGDYRKLSPSCLGKD
FT                 YQLLLGQCSAHGRQGTGIAIKNGTPFQRIWFQTKIQAVAVQLGAPIAITAV
FT                 SVYLPPKDKEAAKHLGELLEELPKPIIVLGDLNAHHDAWGSRTVQSSSGAK
FT                 QRGEAILELVVQNDMIVLNNGSHTRIDPATGTSQALDVTMCSTSHAAKFSW
FT                 KTLLDFSGSDHLPILVDTLCKQNQPTRRTRWIFENADWPLYEQLTNNSIKP
FT                 GSQFTVDEFTNRIIAAAEASIPKTSGRVGPKSVVWWNQDVELAVKARRKRL
FT                 RALRRLKEGDSRKVEALKLFQEARSHCRKTIADAKQKSWDTFVEGINPDSP
FT                 ASQVWNNINRLQGKRQRNVITLNLPTGHTNNGEEVANALADEYQLKSSDAN
FT                 YPEKFRRKHKTEQRSIRKNQRPNLHKRYNVDLTMSELMWALDRRTGSSTGA
FT                 DNVNYQLLQRLPFSGKVALLELFNQIWHSGTFPEEWKIGIVIPIPKPEADR
FT                 SRPEGYRPITLLSCLGKLFERIINRRLVTELESTRKLDPRQYAFRSGKGVD
FT                 SHLAKLESLITLHEDEHAEIVSLDISRAYDTTYRPGILRTLMNWRITGRMM
FT                 NMLSSFLCDRFFQVAVNGALSTLRRADNGVPQGSILSVTLFLVAIQPMFDV
FT                 IPSDAEILIYADDVILIVKGKNHVTIRRKLRRAVKAAVDWAASVGFTIAPT
FT                 KSKLLHVCNLTHRKRGRAIKIDSIPIPQIRHLKVLGIIIDSKLKLSKHLAS
FT                 VKQNCRKRMHILRILGYRLKRSSRTSLLRIGSALILSKVYFGIGLTSINFE
FT                 ALQQTLEPIYNDVVRQASGAFKTSPTISIMAESGWLNFRLALIQRLCILVV
FT                 GLIEKNEDAVAYPVVQRAKTLMLETTGWTLPNVCNVLRLSNREWYAPVPIF
FT                 ENALRNNIKAGTNRAIVVPRFKELITSRYKIHDQIYTDGSKDRDQIGAGLT
FT                 IGDRNYSFRLPGICSVFSAEAFALMNAVSMSQGHTNVIILTDSASCLDALR
FT                 EGRSKHPWIQSIEKNIEGRNVTFCWIPGHSGIVGNEKADELAKQGCNQPSV
FT                 DIPTPAQDAVRAVKEKIWSYWEAEWNQSRCHLRAIKPTAGKYLDRKCPSEQ
FT                 RVLTRIRIGHTRLTHAHLMNNSNPPVCTYCGDRVTVQHIITECRGLEGSRK
FT                 KCGINGSMAEILAYNAENEKAVIQFLKDCELFDKI"
XX
SQ   Sequence 6775 BP; 2145 A; 1631 C; 1450 G; 1549 T; 0 other;
     catcgtgctc gggatactgt attacattat caagcgcgca tttgctctct ccaaatctac        60
     aaatttccga atacatactg tgcgaaatcc ttcgttttgg ccgttacatg gtggtttcac       120
     gcggattgtc cgtcggtaaa gtgaattcgt tgggaaattt accataaaag tgataaatta       180
     gacaacttac cgatagcgta aatatcacgc ggtgcagcca ccgcttgtgg ctatacccac       240
     acatagatcg tcgcgatagt aggtaccgaa agacttgtcc cgatcggtag gttgtgttaa       300
     agcaaaaaca aaatcggtag tggatatttt tttggaatcc tggatctgaa ttctaagtgg       360
     tgaacagtag tctaggacca atgacggata gttccgctgg ccccttcggg ggtgcagcag       420
     gactgagaag gaacaaacca gattggatga tggatccaaa cgacctcgga caagtgatgg       480
     tgttaatcct ccgtcgaaaa acggacgcag ctgacgggca acgagtacaa gatgaatccc       540
     tacctgattc gatcatagta ggaacatcga ttgagatcat catcggtaag aaggcagcaa       600
     gggcactcaa agcaacccgt gagggtcgtg ggacgcgcta tctgcttcgt accagctcta       660
     ctgaaatcat tgaaaagctg acaaagatga ccgagctaac tgatggtaca aaaattgaaa       720
     tagtgcccca ccccacactt aatacggtcc aagggatcgt gtacgaccct gacaccatta       780
     acaaagacga gaagtccatt ttggagtact tggattccca aggcgtacat gctgtgcgga       840
     ggatccaaaa acgtattaat ggcacattaa aaaatacccc tctactggtc ctatcattcc       900
     gtggcacaat tctcccagag cacgtatatt tcgggttgct gcgaattcaa gtgcgaattt       960
     attaccccac acccatgctc tgtttcaact gtggctgcta tgggcattcg agaaagttct      1020
     gccaacaatc tgctatctgt ctgcgatgct cggcaccgca ccacgtatcc gagggagagc      1080
     agtgcactaa cccacctaat tgtcttcact gcagaacaga acaccaggtc acgtcacggg      1140
     agtgccccaa gtacagagag gaagaaaaaa ttgttcgcct caaaaccgat aaagggatct      1200
     ctttctccga agcaaggcgc ctgtgtgccc aagaggcaaa aagtcaaacg ttctctggta      1260
     ttgttcaaga gcaaattcaa caagagctgg cagctaagga tcaactaatc gctactctac      1320
     aaaaacaagt tgcggtatta actaaggaac tctccgcctt gaagaaaatg ctaagacctg      1380
     ccacacaaag tcaatcacca gctccacgcg atcggcgacc gtcattatcc aaccaaaaat      1440
     cgtcttcgct aatggcacca cctacacaaa actctaccca acactccact gaccgcccgt      1500
     cccgaaaaga tcagcccacc acatcaccga aagcgcctcg acaagaagat cgcaagacca      1560
     acaaatctag tggtggaatt caaacacgta gcagaagtgg taaaaggcat atggaagttt      1620
     cgcctactga agccgcccac agccggggta aacgaatgcc ttcgcaactc gataccaata      1680
     ctacatttgt tgatatcgag atgaacaatg gaccagggcc ttcataacaa aatacgcacc      1740
     gtcccttacg attacgactc cgctacgatt atggacatga agaaggaaga acgaaaccga      1800
     ccaaacacgt ttgatgactc ccgcaattcc atggactccg ataaacgacc cacaactact      1860
     acgaacacat cttctaatac cgtcgttacc aagttgaaat ttcaaaccat cacgtctgaa      1920
     gaatacgaca gaatgcataa tctcatcgtc gtaccatcaa cgagcagaac gagcagctat      1980
     attacaacaa ttgattcgcc aagtgcgagg ctcaccacgc caaccctgac cgaggaagtc      2040
     ccggagtatt ccgaagagcc ctcggcggca gttggcgtgg tttgcccaca tctcagggca      2100
     agtattccta tacatcctat atctgtgaaa cagcccaatc ccacttttat cccaatcaac      2160
     acaggcttcg atactacact caattcgaca acgtacagtg tatggcctac gccattacac      2220
     gcaaaaagct ccgagtcatc agcgaaagtg gactctcgaa agatatcgta tggaactaaa      2280
     cgaaatagcg gcatattccg atcctcttcg aactcaaatt tccaccatgg ctccattcat      2340
     caacacaaga cagacctacc agctagatgc acaagactca cagcaacaat cgattcgcca      2400
     agcgcgaggc ctaccacgct gaccctgacc ggggatgttc cggagcaatc cgaagagcct      2460
     ccggcggcag tcagcgtggt ctgcccacac ccatgggcaa gtattacttc aaattttata      2520
     ttcgaagaac ccaatactgc atctgttcca attatcccag gctttgatgc tagatcgaga      2580
     tcaatggaga gcaacagtac atcacctacc agcgtacttc aacatagcca cggcaatgtt      2640
     catcaacctg cagccatctt tgattcgcca agcgcgaggc cttccacgtc gaccctgacc      2700
     agggaggtgc cggatccatc cgaagagccc ctggcggcag tcgacgtggc ttgcctgcaa      2760
     ctctcggcaa gtatagcttc tttttcgccc aaagatcagt caactgccac ttctcttcct      2820
     accaacacag acctcaacat agaagtaaat tcaagggagg tcactacagc cacaaccgtt      2880
     cccctgcaaa catcggttga agattctcca gcggaattgg actactcatc gtactggaat      2940
     ccaatcggga ccgaattcaa caaccacatc gccgacttgc agtcaccgtt acaaacatca      3000
     accgattcgg attcctgtgt taccgaaacg aacgaaaaca gcccaacgtt cgcaattcag      3060
     tggaacatat gtgggctccg ctcccatcta agcgaactac agatcctttt agcaaaatac      3120
     cagcctgtaa tagtgtgctt acaggaaacc aatggagact accgaaagct aagccctagc      3180
     tgtctgggga aggattacca gcttctactt ggccagtgct ctgctcatgg aaggcaaggt      3240
     actggaattg caattaaaaa cggcaccccc ttccaaagaa tatggtttca aaccaaaata      3300
     caggccgttg cagttcaatt aggcgctcca atcgcaataa cagcagtttc ggtttatctt      3360
     ccacctaaag acaaggaagc cgcgaaacat ttgggtgagc ttttggaaga acttccaaaa      3420
     cctatcatcg tgttaggtga cttgaatgcg catcacgacg catggggtag tagaacagtt      3480
     caatcatcat ctggagccaa acagagaggt gaagcaatat tagaactagt tgtgcaaaat      3540
     gatatgattg ttcttaataa tggatctcac acccgcatcg acccagcaac agggacctct      3600
     caagccttag acgtaacgat gtgcagcacc tcacatgcag caaaattttc ctggaaaacg      3660
     ttactcgatt tttcaggtag cgaccatcta ccgatattgg ttgacacact ttgcaagcag      3720
     aaccaaccca cacgccgaac ccgatggatt tttgaaaatg cagattggcc actctacgag      3780
     cagctaacaa acaattcgat caaaccaggt tctcagttta cggtagacga atttacaaac      3840
     agaataatcg ctgctgcaga ggcaagcatc cccaaaactt cagggagggt aggaccaaaa      3900
     tctgttgtat ggtggaatca agatgtagaa ttagcagtaa aggccagacg aaaacgacta      3960
     cgagctcttc gtcgcttgaa agaaggtgac tctagaaaag tcgaagctct taaattattt      4020
     caagaagcac gatcacactg ccgcaaaact atagccgatg ctaaacaaaa aagctgggat      4080
     acatttgttg agggcataaa ccctgattca cctgctagtc aagtttggaa caacatcaat      4140
     aggctccagg gaaagcgaca acggaatgta ataaccctaa accttccaac agggcatacg      4200
     aataacgggg aagaagtagc aaacgcccta gctgatgagt accaactgaa atcttcggac      4260
     gcaaactatc ccgaaaaatt ccgtcggaaa cacaaaaccg agcaacggtc aatacgaaaa      4320
     aaccaacgtc ccaacctaca taagcgatac aacgtagacc ttaccatgag cgaactgatg      4380
     tgggctcttg atagacggac gggttcttca acgggagcgg ataacgtaaa ctatcaattg      4440
     cttcaaaggt taccattttc tgggaaggtt gctcttttgg agttattcaa tcaaatatgg      4500
     cacagtggca cttttcctga agaatggaaa ataggaatag taattccaat tcctaaacct      4560
     gaagctgatc gcagccgacc agaaggatac cggccaataa ctttattgag ttgcttagga      4620
     aagttgttcg aaagaataat caaccgtcgg cttgtaacag aattagagtc cacgagaaaa      4680
     ttagacccac gacagtacgc tttccggtca ggcaagggag ttgactctca ccttgccaaa      4740
     ttagaatcgc ttatcaccct ccatgaggac gaacatgcag aaatcgtatc tcttgacata      4800
     tcaagagcct acgatactac atacagacct ggtatccttc gtactctgat gaattggaga      4860
     ataacaggga ggatgatgaa catgctatct agttttctgt gtgacagatt ctttcaagtg      4920
     gcagttaatg gagccctctc aacccttaga agagcagata atggagttcc acaaggatca      4980
     atcctatctg tcacattgtt ccttgtagca attcaaccca tgttcgatgt tatacctagt      5040
     gatgcagaaa tcctaatata tgcagatgac gtcattctaa tagtgaaggg taagaaccac      5100
     gtcacaatac gtagaaagct tagaagagcg gttaaagctg cagtcgattg ggccgctagt      5160
     gttgggttca ctatagcccc tacgaaatct aagctactgc atgtctgtaa cctaacacac      5220
     cgtaaaagag gtagagcgat caagattgac agcattccaa tccctcaaat aaggcattta      5280
     aaagttctcg gaatcataat cgattctaaa ctcaaacttt caaaacacct agcgtccgtc      5340
     aagcaaaact gtcgtaaaag aatgcatatt ctacgtatac taggatatcg tctgaaaaga      5400
     agtagcagaa ctagtttgtt aaggatagga tcagctctta ttctttcgaa agtctatttt      5460
     ggaatcggac tcaccagcat aaattttgaa gcattgcaac aaactctgga acctatctac      5520
     aacgatgtcg ttcgtcaagc atcaggagca ttcaaaacta gcccaacaat ttctataatg      5580
     gcggaaagtg gttggctgaa ctttcgctta gctttgattc agcgtctgtg tatactggtt      5640
     gttggcctca ttgagaaaaa tgaggatgca gttgcctatc cagttgtcca gagagctaaa      5700
     acacttatgt tggaaacgac gggatggacg ttgccaaatg tgtgtaatgt gttaaggttg      5760
     tcaaacagag agtggtatgc gccagtccca atatttgaaa atgcactgag gaacaacatc      5820
     aaagcaggta caaaccgggc catcgtggta ccaaggttta aggaacttat cacaagtcgc      5880
     tacaaaatcc acgatcaaat atacacggat ggctcaaaag atcgcgacca aattggagct      5940
     ggactaacaa ttggtgatag aaactatagt tttcgtttac ccggcatatg cagcgtattc      6000
     tccgccgaag ctttcgcctt gatgaacgct gtttcaatgt cacaaggaca cacaaatgtt      6060
     atcatcctaa cagattctgc cagctgtctt gacgcgctac gcgaaggacg atctaaacac      6120
     ccctggatac aatccatcga aaagaatata gagggacgaa atgtgacatt ctgctggata      6180
     cctgggcatt ctggcatagt cgggaatgag aaagctgatg agctggcgaa acaaggttgt      6240
     aatcaaccat cggtggatat accaacacct gcccaggatg ctgtacgagc ggtaaaagaa      6300
     aaaatttggt catattggga agcagaatgg aaccagagcc gatgtcacct aagagccatc      6360
     aaacccacag ctggaaaata cttggatcgt aaatgcccat ccgaacaacg cgtgctaact      6420
     cgcatacgaa tagggcacac tcgcctcacc catgcacacc tgatgaacaa cagcaatcct      6480
     cctgtatgca cgtattgtgg agatcgagtt acagtgcagc acataataac ggaatgcaga      6540
     ggactcgaag gaagtaggaa aaaatgtggt ataaatggat cgatggctga aatactcgcg      6600
     tataacgctg aaaatgaaaa agcagtgata caatttctca aagattgtga attgtttgat      6660
     aaaatttaac aaaggttaat ctgataaaat ttgtacgaaa ttagtattaa acagacacga      6720
     atgccactca gatatgtggt aaagtgtctc taataaagca taataataat aataa           6775
//
ID   I_Ele2      repbase;    DNA;    INV; 6104 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6104
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6104
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 11
CC   sequences with >98% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1429
FT                 /product="I_Ele2_1p"
FT                 /translation="MTGKPPALMAGVPDDPIGSQRCGRTPGWMQSKDEMGQ
FT                 TMVLVLRCKVPENVTADPRLPEPFTIGTSVELAIGAKEARSVKTTREGRGS
FT                 RYLLRTNSKTIINKLQKLTELIDGTPIEIVPHPTLNTVQGIVYEPDSINTD
FT                 EKMIEKHLIPQEVHTVRRIKKRVNGKLQNTPLLILSFHGTELPEYVYFGLL
FT                 RIPVRTYYPSPLLCFNCGSYGHARKSCQQPGICLRCSQPLHVTEGEQCANT
FT                 PNCFHCNEEHPIMSRECSKYKEEDKIIHLKIDRGISFGEARRLYSEENRRE
FT                 TIARMIQNQLKQEVAKKDQLIATLQKQVADLAKEXAILKSAPQEPQPTFTK
FT                 PSSLPPNSSVAPTRVSGTSRKTEHQSRRDKPFVSPSAEDNGTDDGIRTRSR
FT                 SGKRVFEISPTDSRGNRGKRVSNHPCTSNNTTNTET"
FT   CDS           1396..6006
FT                 /product="I_Ele2_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MYKQQHHQHGNVMTGETYKTISPNSDPDLATKTDTNT
FT                 EERNLYQDARMDPSYKPTEHDSGHRSKNTLDYNNQHCERFEGGECVVPPSL
FT                 PEEEASLAREAIRDVYLQPVDRQTSSSAAIKRKSSALPYNIVSNSAAYDQY
FT                 NNLNCKPSSSSTSFDSPCARLTTSTLTRDVPDFSDEPLAAVDVXKPTVSAS
FT                 IFTSRYLPVNHSILPNSPTNLGTNTATTQRRSNTTENKNNESFLRSHLHEE
FT                 PRRAKGKREVTYPLPVLEVDARGGRNDAYHERLAFLSPSQNPVEPNYTHTF
FT                 TTDAAPNILHRHPRSPRSNSKSSDATISSNSXEQAVSPSFAMQWNICGLRS
FT                 HYSELQMLIAKHQPVVVSLQETNIDHQRAPAKLLGDKYEFLFSSCSTHGRQ
FT                 GAGVAVRRGSPFQRIQIQTRIQAVAVQLFAPTEITVVSVYLPPKDKNAINL
FT                 LEDLLEELPKPVMLLGDLNAHHVAWGSTTSTAITEAKRRGEAILELVVQND
FT                 MVVLNDGSHTRIDPVTGNSQALDISICSTSVAAKFAWKIQTDTSDSDHLPI
FT                 LIDLLSASSELHCRSKWIYGKANWELFQEITSETLRPGNFLTVEEFTNRII
FT                 SAAEASIPKSSTKRGTKSVAWWSEDVKIAVKQRRKRLRALRRLGPEDPKRQ
FT                 EALKQFHDARASSRKIVKEAKQKCWEDFVESINPTSSASEVWNKLNRLQGK
FT                 RTSNTLALNLPKGFTNNGRDVAEALADEYETKSANSSYPEKFRRKHASNSN
FT                 LYNKSQRPHLYKRYNTDLTIEELVWALDRKGGSSTGADNIGYPMLQRLPIS
FT                 SKTAMLELFNRIWNSGTFPERWKLATVVPIPKPDADRSRADGYRPIALLSC
FT                 LGKVFERMINRRLTTELETNKKLDPRQHAFRPGKGVESHLAHLESLLSFEN
FT                 DEHVEIVALDISKAYDTTWKPGILRTLKEWKISGRMLNMLCSFLVDRSFQV
FT                 SANGHISSSRIAENGVPQGSILSVTLFLIAMQPIFTKIPPNAEILLYADDV
FT                 ILVVKGSNRQLLRQIMNKTVRSVTEWANSVGFSIAPTKSKLLHCCRLRHRK
FT                 RGRAIKINGASIAHVRKMRILGIMLDSNLNFKQHLASVKSSCSKRINILRI
FT                 LGCRLKRSSRFTLLKAGAALITSKLFFGLGLTSRNIDDMERILGPTYNEVV
FT                 RQSSGAFVSSPINSVMAEAGCLPFRLALIQRLAQLAVRLLEKNPSAVNYPV
FT                 VLRAKDFLRQTTGYSMPNVCSTLRNYDREWYAHSPYTENHVRNKIKAGTNS
FT                 NIVIPTFQELISNQYQYHKKTFTDGSKDADFTGVGVVMEDKEESYALPEAC
FT                 SVFSAEAHALMTAATIASEHHNTIIFTDSASCLDALQSGHSKHPWIQSIER
FT                 VSRSRSITFCWIPGHCGIAGNERADSLAKQARSKQKLDIALPAQDLIKNIR
FT                 RKIWSVWELEWRQSVSQLRQVKCSPIKYPDRKCASEQRTLTRLRIGHTRLT
FT                 HSYLFNKSSPPMCNSCGTRTTVQHILTDCRLYAHQRSNCGITGSLCEILSY
FT                 NPQRETAILQFLKDSNIYNEI"
XX
SQ   Sequence 6104 BP; 1912 A; 1609 C; 1289 G; 1290 T; 4 other;
     gcgctgatag actttattgt cccgcaagcc ccgagtgcga gttgacgcca acaacgaatt        60
     caattcggtc gtacgaaatt ttgtcgcggg aaacgaataa agaagtggat ccgaattagt       120
     gctaccctcg tccggtcaaa tgaccggtaa gccccccgcc ctgatggcgg gggtaccaga       180
     cgatccaatt ggctcccaac gctgcggaag aacaccggga tggatgcaaa gtaaggatga       240
     gatgggccaa accatggttc tagttttacg ttgcaaagtg ccggaaaacg taactgctga       300
     tcctcgcctc cctgaaccat ttaccatcgg cacatcagtc gaactagcaa taggagcaaa       360
     ggaagccaga agtgtaaaaa ccacccgtga aggacgtggc tcacgatatc tccttcgcac       420
     taactcgaaa accatcatca ataagctcca aaagttgacg gaactgatcg acggcacgcc       480
     aatcgaaatt gtcccacacc cgacattgaa caccgtccag ggtattgtgt atgaaccgga       540
     ctccataaac accgacgaga aaatgatcga gaaacacctt atcccccagg aggtacacac       600
     ggtgcgtcgt atcaaaaaac gagtaaacgg caagctacaa aacacccccc tgctaatcct       660
     gtcatttcac ggtacagaac tcccagagta tgtgtacttt ggactcttac gaattccagt       720
     aagaacctac tacccatcgc cactactttg tttcaactgt ggatcgtacg gccatgcacg       780
     aaaatcctgc caacaaccag gtatctgctt acggtgctcg caacctctcc atgtaacaga       840
     aggcgagcag tgcgcaaaca caccaaactg cttccactgc aatgaagaac accccatcat       900
     gtctcgggaa tgctctaaat acaaggaaga ggataagatc attcacctaa aaatcgatcg       960
     cggaatttcg tttggcgaag caagacgtct ctacagtgaa gaaaatagaa gagaaaccat      1020
     cgctcgtatg atccagaacc agctcaaaca ggaagttgct aagaaggacc aactgattgc      1080
     aactcttcaa aaacaggttg ctgatctagc caaagagwta gcaattctca agtcagcccc      1140
     tcaagaacca caaccaacgt tcacaaaacc atcatcatta ccaccaaatt catctgttgc      1200
     acccacccgg gtatctggaa caagccgtaa gacagagcac cagtcgagaa gagataaacc      1260
     atttgtatca ccgtctgctg aagacaatgg aaccgatgat ggcattcgaa ccaggagccg      1320
     aagtggtaaa cgtgtattcg aaatttctcc gacagactcc cgcggcaacc ggggcaaacg      1380
     tgtatcgaac catccatgta caagcaacaa caccaccaac acggaaacgt gatgaccgga      1440
     gaaacctaca aaactatctc cccaaactcc gaccctgacc tggcaactaa aacggacacg      1500
     aacacggaag aacggaactt atatcaagac gcaagaatgg accccagcta caaaccaacg      1560
     gaacatgatt ctggacatcg atcgaaaaat acgctagatt acaacaatca acactgcgag      1620
     cggtttgaag gtggggaatg tgtagtaccc ccttcacttc cagaagagga agcgagtctg      1680
     gcaagagagg cgatccggga cgtctacctc caacccgtcg accgccaaac ttccagctcg      1740
     gctgctatca agcgaaaaag ttcagcttta ccttacaaca ttgtttctaa ctctgctgct      1800
     tacgaccagt acaacaacct gaactgtaaa ccatcgtcca gttctacttc ttttgattcg      1860
     ccatgtgcga ggcttaccac gtcgaccctg accagagatg tcccggattt ttccgatgag      1920
     cctctggcgg cagtcgacgt ggmaaagccg actgtatcgg caagtatctt cacttcacgc      1980
     tatttaccag tgaaccattc aatccttcca aactctccca ccaatctagg gacaaacaca      2040
     gccaccacac agcggagaag caataccacc gaaaacaaga acaacgagtc ctttctccgt      2100
     agccatcttc acgaggaacc tcgacgagcg aagggaaagc gtgaagtwac ctaccccctt      2160
     ccagttctgg aagtggatgc tcgggggggc aggaatgacg cctaccacga gcgccttgca      2220
     tttctctccc cctcccaaaa tccagtcgag ccgaactaca cccacacttt cacaactgat      2280
     gccgcaccaa acatcctcca ccgacaccca agaagcccac gatctaactc aaaatcctcc      2340
     gacgctacaa tatcatcaaa cagcgawgag caagccgttt caccttcttt tgccatgcaa      2400
     tggaacatat gtggtctcag gtcacactac agcgagctac agatgctgat cgcgaaacat      2460
     caaccagtag tagtctctct ccaagaaacg aatatagacc atcaaagagc accggcgaaa      2520
     ctcctgggcg acaaatacga attcctattt agctcgtgtt cgacacacgg aagacaaggc      2580
     gcaggtgtgg ccgtcaggag gggctcaccc ttccaacgaa tacaaataca aacccgtatc      2640
     caagctgttg cggttcaact cttcgctcca acggaaatta ccgttgtctc agtgtatcta      2700
     cctccaaagg acaagaacgc tatcaaccta ctagaagatc ttctagaaga gcttccaaaa      2760
     ccagtaatgc tcttgggaga cctgaacgca catcatgttg cctggggaag cacaacaagc      2820
     acagctatca ctgaagcaaa aagaagaggt gaagcaattc tggaattggt ggtccagaat      2880
     gacatggttg tcctaaacga cggctctcac acccgaatag atcctgtcac cgggaactct      2940
     caagccctcg atatctcgat atgttctaca tcggtggcag ctaagttcgc ctggaaaata      3000
     cagacggata cctcagacag cgatcacctg ccaattttaa ttgatctgtt gagcgcttca      3060
     agcgaattgc actgtcgatc gaaatggatt tacggcaaag ctaactggga actattccaa      3120
     gaaatcacca gcgaaactct acgtccagga aattttttga cagtcgaaga gttcacgaat      3180
     agaatcatct cagcagctga agcttctatt ccaaaaagct caactaaacg cgggacaaaa      3240
     tcggttgcat ggtggagcga agacgtcaag atagccgtga aacaaagacg caagcgactg      3300
     cgtgcccttc ggcggcttgg acccgaagat cctaagaggc aagaggcttt gaaacaattt      3360
     cacgacgccc gtgcttcgtc ccgtaagatt gttaaagaag caaaacaaaa atgctgggaa      3420
     gacttcgtag aaagtatcaa ccccacgagt tcagctagcg aggtatggaa taagctaaac      3480
     agactccaag gtaaacggac ttcaaacaca cttgcactaa acctcccgaa aggtttcaca      3540
     aacaacggaa gagatgtagc agaagctctg gctgacgagt acgaaacaaa atcagctaat      3600
     tccagctacc ctgaaaaatt cagaagaaaa cacgcatcaa actccaactt atacaacaag      3660
     tcccagcgac cacacctcta caaacgctac aacacagacc ttactataga agaattagta      3720
     tgggctcttg atcgcaaagg aggttcatca actggtgcag ataacattgg ctatccaatg      3780
     ctgcagcgtc taccgatatc gtccaaaacg gccatgttgg agctgttcaa ccgaatatgg      3840
     aacagtggaa cattcccaga acggtggaaa ttagcaacag ttgtgcctat tcccaaacca      3900
     gacgcggatc gcagcagggc agacggctac agaccgatag ctctgcttag ttgcttagga      3960
     aaagtcttcg aaaggatgat aaaccgtcgt ctcactaccg agctcgagac aaacaagaaa      4020
     ttggaccctc gtcaacatgc tttccgccca ggtaaaggtg ttgagtccca tctagctcac      4080
     ctcgagtccc ttctaagctt cgaaaacgat gagcatgtcg agatcgtagc cctcgatata      4140
     tctaaagctt acgacacaac atggaagccg ggaattctgc gcactctgaa ggaatggaaa      4200
     atttccggcc gaatgttaaa tatgctttgc agcttccttg tcgacagatc attccaggtc      4260
     tccgccaacg gacacatatc aagctcaagg atagctgaaa acggagtgcc acagggatcc      4320
     attttgtcgg tcaccctctt cctgatagcc atgcagccca tcttcaccaa aatacctcca      4380
     aacgctgaaa ttctgctata cgctgacgat gtcatccttg tagtgaaggg gtcaaatcga      4440
     caattgttac gccaaataat gaataaaact gttcgttctg ttactgaatg ggccaatagt      4500
     gttggcttct cgatcgcgcc aaccaaatcc aaacttcttc actgctgccg actgcgtcat      4560
     cggaagcgag gccgagctat taaaatcaac ggagcatcta tagcgcatgt tcgaaaaatg      4620
     agaatactcg gaattatgct agattcaaac ctcaacttta agcaacacct agcatccgtc      4680
     aagagcagct gcagcaaaag gattaacatt cttagaattc taggatgccg actgaaaaga      4740
     agcagcagat tcaccctact gaaagcagga gcagctctga tcacctcaaa actgtttttc      4800
     ggcctaggtc ttacaagccg caatattgat gacatggagc gaatacttgg accaacatac      4860
     aacgaggtag tacgccagtc ttcgggagcc tttgtatcca gccccatcaa ttctgttatg      4920
     gcggaagctg gatgtctccc atttcgcctg gcattaatac aacgtctagc gcaactagcg      4980
     gtgcggcttc tggagaaaaa tccctcagca gtcaactatc ctgtagtgct aagagctaag      5040
     gattttctac ggcaaacaac aggctacagc atgccaaatg tatgtagcac gctgagaaat      5100
     tatgaccgag aatggtatgc acactccccg tacaccgaga accatgttag aaataagatc      5160
     aaagcgggta caaacagcaa tattgttata cccacattcc aagagttgat atctaaccag      5220
     taccaatacc acaaaaaaac cttcactgac ggctccaaag acgctgactt caccggagta      5280
     ggtgtagtca tggaggacaa ggaagaaagt tatgcgctac cggaagcctg cagcgtgttc      5340
     tcagccgaag ctcacgccct catgaccgct gcgactatag caagtgagca ccataacacg      5400
     attatcttca ccgactctgc tagttgtctg gacgctctac agagcggtca ttctaaacac      5460
     ccgtggattc aatccataga aagagtttcc cgaagtcgaa gcatcacgtt ctgttggatc      5520
     ccaggtcact gtggtatcgc agggaatgag cgcgctgaca gcttagccaa gcaagctcga      5580
     agcaaacaaa aacttgacat tgcattacca gcccaagacc tcattaagaa catcaggcgt      5640
     aagatttggt ctgtatggga gctcgagtgg cgtcaaagtg tatcacaact aaggcaagta      5700
     aaatgttcac ccataaaata cccagaccgc aaatgcgcct ctgaacaacg cactttgaca      5760
     cgacttcgta taggacatac tcgtctcacc cattcgtatc tgttcaacaa gtcgtctccg      5820
     ccaatgtgta acagctgtgg gacgcgaact actgttcaac acatcctgac tgactgcaga      5880
     ttgtacgctc atcaacgatc taactgtgga atcaccggct cactatgcga aattttatcg      5940
     tataacccac aacgagaaac agcaattcta cagtttttaa aagacagcaa catatacaat      6000
     gaaatttaat atcctaatac ttgtatagta aacaaataag ttaacgctga cacgaatgcc      6060
     actaaagtgg taaagtgtcc ttaataaata ataataataa taat                       6104
//
ID   I_Ele20     repbase;    DNA;    INV; 6214 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele20.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6214
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6214
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 14
CC   sequences with 94-98% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           407..1705
FT                 /product="I_Ele20_1p"
FT                 /translation="MAASSSGDPGGTAARRLPTYMDPTNKFGELTFLQLTG
FT                 KDGVQLPXNPYIVGKSVEMCAGGPIEDGKSEAQGTRYTLKVRDPAQVAKLL
FT                 KMTHLIDGTKVEVIAHPNLNVCRCVISCFELIHMDEAEILREMGGDGVIRV
FT                 QRIMRLEGGKKVNTPALILTFCKTTFPGHIKVGLLHVPTRPYFPNPMLCYN
FT                 CFSYGHTRTRCPGPQRCFNCSGNSHGEEECGEAPHCRNCNDGHRPTNRQCP
FT                 VYKQEIEVIKIKVRDNLSFPEARKRAELQAQGSYAQVAAQQNEFDKKLKEL
FT                 EATMKQKDELIAKLLEDNRQKDEKMEQMLAQIWQLKQQISSQEKPHSSREI
FT                 KSAQPPSGVVTRSRNNSPALTRSRNNSPAIQETKRSRASKQHTDSLTKPAS
FT                 PDRQSPPPKKTATTIPTQRSTYSDDDISISEIPPNHRLR"
FT   CDS           1659..6110
FT                 /product="I_Ele20_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTIFRYLRSHPITAFDSSNAKHRLNTHDDDPRLTTDN
FT                 EINRFESEECAVLLSTQAQQVEKTVRDALPQPVDSDLXSVADGTADNTTMR
FT                 VFEHSRRIQMIVEETEDINNETTQSLSLMPTTVGIHQRSSVVRSTVVGIGG
FT                 QDVPQVSPFNNHDLAGTAASVPITDPRTSLTQPGYQNTHLQGDTYSQTHRQ
FT                 DIVSCSQTTQSLSPVPVAVGDFGSSVVFSTAAGTVGQDVPQVSTSQQRPLM
FT                 EFTAETIPIPATILNQQAPSRGASVTSSCSSDILPAVNNNDKCFALQWNMR
FT                 GLRANISELKQLIGKYSPCIVALQETKVRQTSVPPDFVGKNYSLLLEPKKD
FT                 HYWQHGVGLAIKEGIPFERMIIDTTLHLIAVRIQKPFQATVVSIYIPPSAQ
FT                 QCETALNNLFDQLDGPVIFLGDFNAHHLAWGSQSSNTLGRFIAETTLARGL
FT                 VILNNGSPTRIDPATGNTSSIDISFCSESLAQKLNWRTLSDTCNSDHFPMI
FT                 IGLPGWSDTATTRKKWFFDRADWSVYERITAELIRSDEVWDVDRFTAKLIE
FT                 AATKCIPQSSGQAGPKSVPWWCPEVKDAIKRRRKCLRSLRRMDASDCERPA
FT                 ALKRFQEARATARKAIKTAKQQSWEDFVGKLSPSSTTTELWRTVNTLRGKR
FT                 QHRTPILKLANRYSDDPSEIAEELAKHYSERSATSSYSPLFQKAKEKAEQQ
FT                 RIDPLLNTNDRYNMDITLNELLWALDKGQSGSTGHDMIGYPMLKHLPLSVK
FT                 LILLEIFNGIWRSGVFPSSWKKAIIVPIPKPKCNTPEPDTFRPISLTSCMA
FT                 KVLERIINRRLIAELESSGRLDERQHAFRSGRGADTYLAELEKSLPMTDEH
FT                 SLIASLDLSKAYDTTWRHGILRTLKSWRIRGRMMKLIQSFLSERMFQVCVG
FT                 GQLSRPHRLENGVPQGSVLSVTLFLVAMQPIFRVIPKGVEILLYADDILLV
FT                 VRSRKTEGLHRKLQSAVKAVEKWTKSVGFTISATKSSTFYCSPNARRNPSQ
FT                 NITINRVTVPRTNRLRILGITLDRTLNFKAHCKMVKESCASRLRIMRTIGA
FT                 QLPRGNRNTMLQVGSAIITSKLLYGIGLVSRGGEAAFQNLAPVYNQMIRYA
FT                 SGAFVTSPITSIMVEAGTLPFELLATQSVIRIAIRLLGIHGPNRNLPLVQR
FT                 ASTRVGELTGAALPMIAQLVKRCSREWHASKPNVVWDVKNAAKAGDPPNKV
FT                 RPIVQQLLSNRFKTSTVYYTDGSKGNDTVGAGLFGVNLAEKYSLPKQCSIF
FT                 SAEAYAIRMALLLSNESDIAILTDSASCLLALEAGRSKHPWIQEIESLARG
FT                 KNVQFCWIPGHTGIRGNNEADRLANDARCQPIINIALPAEDAFKDIKIGVR
FT                 LYWERLWLTYRDVKLREIKFDTHKWKDRENNAEQRVLTRLRIGHTRLTHSF
FT                 LLSKESPPNCECCGTTLDVRHIVLHCQKYDDVRQKYEINTNSLRSALKNDD
FT                 EGETKLIKFLRDTKLFEKL"
XX
SQ   Sequence 6214 BP; 1905 A; 1499 C; 1388 G; 1418 T; 4 other;
     tcatcgcgtt tcgacacgcc gttccgtacg gtagctacag cgcgcgctct cgtagtaaac        60
     aaggtaattc tccctagttt tccgcgaccg gcgcggtcga gacgttactg tatcaataag       120
     tgtagtgact gagaaacagt gaatcgtgaa ggatctgtga aaatcgctac gtaaacggtc       180
     gaaattagtg aaatttctgc cactcacgtg cagtgtatac gaaaacaaac ggctgctgtg       240
     tagttaccct ctcaacacca ttcattcttt cgtgttcgcs stgacggtgt gccagaagag       300
     cgttaaattg gaataaaaaa agaagctcaa aagtttacaa ggaaccaaaa ttggggtagg       360
     taacgggtga ccgttaccac tgtagaagtt tttgccgtgt aacaacatgg ctgcgtctag       420
     cagcggagac cctggcggaa cagccgcgcg aaggttgccg acttatatgg acccgacaaa       480
     caaatttgga gagctaacat tccttcaact cacgggaaag gatggtgtcc aacttccgam       540
     aaatccgtat attgtcggga aatctgtaga gatgtgcgcc ggtggaccaa tcgaagatgg       600
     aaaaagcgaa gcccaaggaa cacgatacac tctgaaagta agagatccgg ctcaagtagc       660
     taagctgttg aagatgaccc acctaatcga cgggacaaag gtagaggtga ttgcacaccc       720
     gaatctgaac gtctgtcgat gcgttatttc atgcttcgaa ctcatccata tggatgaagc       780
     agaaatatta agagaaatgg gcggtgatgg agtaattcga gttcagagaa tcatgcgact       840
     tgaaggcggt aaaaaggtta acactccggc gctgattcta acattttgca agactacgtt       900
     cccaggtcat atcaaagtcg gtctacttca tgttcccact cgtccatact ttccaaatcc       960
     tatgctgtgc tataactgtt tcagctatgg acacacacgt actcgatgtc ctggaccaca      1020
     acgttgcttc aactgctcag gaaactcaca cggggaagag gaatgcggcg aggctcctca      1080
     ctgccggaac tgcaacgatg gccaccgtcc tactaaccga cagtgtccag tatacaaaca      1140
     agagattgaa gttataaaaa tcaaagtgcg tgataattta tccttcccag aagcaagaaa      1200
     acgagccgaa cttcaagcac aaggcagtta tgctcaggtg gctgcacagc agaatgagtt      1260
     tgataagaaa ctcaaggaac tagaagcaac aatgaaacag aaggacgaac tcatcgctaa      1320
     actgttagaa gataaccggc agaaggatga aaaaatggaa caaatgttag cgcaaatttg      1380
     gcagctaaaa cagcaaatct ctagtcaaga aaaaccgcac tccagcagag aaattaaatc      1440
     agcccaaccg ccatcaggtg tcgtgacacg ctcaagaaat aactctccag ccctaacacg      1500
     ctcaagaaat aattcgccgg ctatccaaga aacgaaacgc agccgagcct ctaaacagca      1560
     tacagactcg ctcaccaaac cagcatcgcc agatagacaa agcccacccc cgaagaaaac      1620
     tgcaaccact attcccaccc aacgatcgac gtattctgat gacgatattt cgatatctga      1680
     gatcccaccc aatcaccgcc ttcgatagct ccaatgccaa acaccgtttg aatacacacg      1740
     atgatgaccc acgccttacc acggataatg aaataaatcg gtttgaaagt gaggaatgtg      1800
     cagtactcct ttcaacgcaa gcacagcagg tagagaaaac tgtccgggac gccctacccc      1860
     aacccgttga tagtgatctt kcctctgtgg ccgatggaac tgctgataat accacgatga      1920
     gagtttttga acatagtagg agaattcaaa tgattgtaga agaaacggaa gatatcaaca      1980
     acgaaactac acaaagtctt tcccttatgc cgaccactgt cggtattcac caacgtagta      2040
     gtgtagttcg ttcgacagtg gttggcattg ggggacaaga cgtccctcag gtcagtccct      2100
     ttaacaacca tgacttagca ggtactgctg cgtctgttcc aattacagat ccgagaactt      2160
     cacttaccca accggggtac caaaatactc acttgcaagg agacacgtat agccaaaccc      2220
     acagacaaga tatagtcagc tgctctcaaa ctacacaaag cctttcccca gtgccggtcg      2280
     ctgtcggcga tttcggaagt agtgtagttt tttcgacagc ggctggtact gtgggacaag      2340
     acgtcccaca ggtcagtacc tcgcaacaac gtccgttaat ggaatttact gcggaaacca      2400
     ttcctattcc agccacaatc ttgaatcaac aagcaccatc acgcggtgca tcggtgacgt      2460
     catcatgttc gtcagatatc ctgccagctg tgaacaacaa cgataaatgc ttcgcgctac      2520
     aatggaacat gcgtggacta cgagcaaata tcagtgaatt gaaacaactc attggaaagt      2580
     atagcccctg catcgttgct ctccaagaaa ctaaggtaag gcaaacatct gtaccgccgg      2640
     actttgtcgg caaaaactat tcactgctat tggaaccaaa aaaagaccac tactggcagc      2700
     acggggttgg ccttgcaata aaagaaggca ttccgttcga gcgcatgatt atcgacacta      2760
     cgttacatct catcgcagtg cgcatccaga aacctttcca agctacggtc gtatcaatat      2820
     acatcccacc aagcgctcag caatgtgaga cagctctgaa taacctcttc gaccaattag      2880
     atgggccggt aatctttcta ggtgatttta acgcacacca cttagcgtgg gggtcgcaat      2940
     cctcgaacac actcggtcgt ttcatcgcag agactacgct agccaggggg ctggtaatac      3000
     tcaataacgg ttctcccaca cgtatcgacc cagcgacagg caacacttcg tctatcgaca      3060
     tctccttctg ctcggagagt ctagcgcaaa aactcaactg gcgaacgctt tcggatacgt      3120
     gtaacagcga ccatttccca atgataattg gactcccggg gtggtcagat acagctacta      3180
     ctcggaagaa atggttcttc gaccgtgcag attggtctgt atatgaacgt ataactgcag      3240
     aattaatccg atcagacgaa gtgtgggatg ttgatcggtt tacggcgaaa ctcatcgaag      3300
     cagcgaccaa atgtattcca cagtcaagtg gacaagctgg cccaaaatca gttccatggt      3360
     ggtgccccga agttaaagat gctatcaaac gacgacgaaa atgcttacga tccctaaggc      3420
     gtatggatgc ttcggattgt gaaagaccag ctgctcttaa aaggttccag gaagcgagag      3480
     caacagcaag aaaggccata aaaacagcaa aacaacaatc ttgggaagac tttgtaggta      3540
     aattatcacc cagcagcacg accactgagc tctggaggac agtgaataca cttcgcggca      3600
     agcgacagca ccgaaccccc attcttaagc tagcgaacag gtactcggat gatccaagcg      3660
     aaattgcaga agaattagca aaacattata gcgaaaggtc agcgacatcc agctattcgc      3720
     cgctttttca aaaagcgaaa gaaaaagctg aacaacaacg catagacccc ttgctgaata      3780
     ccaacgatcg ttacaacatg gatataaccc tgaacgaact cttgtgggca cttgacaaag      3840
     ggcagagtgg ttcaacaggc catgacatga tagggtatcc catgcttaaa caccttccgc      3900
     tgtccgtcaa gctaattctc ctagagattt ttaatggtat ttggcgcagt ggtgtctttc      3960
     cctcctcctg gaaaaaagcg attattgtgc ccataccaaa accgaagtgc aacacccccg      4020
     aacctgatac gtttcgaccg atttcgctta ctagctgcat ggcgaaagta cttgaacgta      4080
     tcatcaacag acgtctgatc gccgaactgg agtcctccgg cagacttgac gagcgacaac      4140
     atgcctttcg ctcggggcgc ggtgcggata catatctagc cgaacttgaa aaatcactcc      4200
     caatgacgga tgagcatagc ctaatagctt ctttggacct atcgaaggcc tatgatacta      4260
     catggcgaca tggaattctg cgcaccctta aatcttggag aatacggggt cgtatgatga      4320
     aacttattca aagcttcctc tccgagcgga tgtttcaagt ttgcgtaggt ggacaactgt      4380
     ctcgcccaca tcgattggaa aacggtgtcc cacaaggctc cgtactatca gtaacactct      4440
     tccttgtggc catgcaacct attttcagag tgataccgaa aggagtggaa atcttgcttt      4500
     atgcagacga tatccttctc gttgtgagaa gccgaaaaac ggaggggctg catcgcaaat      4560
     tacagtcagc cgtcaaagcc gtagagaagt ggacaaaaag tgttggcttc acgatctctg      4620
     ctactaagtc ttcaactttt tattgtagcc ccaatgcgcg ccgtaaccct tctcagaata      4680
     tcaccataaa ccgtgtaact gtaccccgaa caaatcgatt gcgaatcctc ggcattactc      4740
     ttgatcgcac attgaacttc aaagcccact gtaagatggt caaagagtct tgtgcttcta      4800
     ggctccggat aatgagaacg attggagccc agcttcctcg tggcaaccga aatacgatgc      4860
     tgcaagtcgg ctcagcaatt ataacatcca aactgctgta cggtataggc cttgttagca      4920
     gaggaggtga agccgcattc cagaatcttg caccggtata caatcagatg atccgttatg      4980
     catccggcgc ttttgttacc agccccatta catcaatcat ggtggaagcg ggtactttgc      5040
     ccttcgaatt gttggcaacg caatcagtca tacgaatcgc tatacgccta ctgggaatac      5100
     atggacctaa tagaaacctg ccgctggtac aacgagcgtc tactcgtgta ggagaattaa      5160
     ctggcgcagc attaccgatg attgcacagc tagtaaagcg gtgtagtcgt gaatggcacg      5220
     cttcgaagcc gaatgttgta tgggatgtga aaaacgctgc gaaagccggc gaccctccca      5280
     ataaagtgcg accaatagtt caacagttgc tttcaaaccg attcaaaacg tcaaccgttt      5340
     attatacgga tggctctaaa ggcaacgata cagtcggtgc tggtctattc ggagtcaatc      5400
     tagcagaaaa atatagcctt ccaaagcagt gcagcatttt ctctgctgaa gcatacgcga      5460
     ttcgcatggc tcttctgcta tcgaacgaga gcgacattgc gatcctcaca gattcagcta      5520
     gttgtctact ggctttagaa gctggaagat caaaacaccc ttggatccag gaaatagaat      5580
     ctctcgctcg tggaaaaaac gtacagttct gctggattcc cggccatacc ggtattcggg      5640
     gcaacaacga ggctgaccga ctagcaaatg atgcaagatg tcaaccaata atcaatattg      5700
     cactgccagc ggaagatgcc ttcaaagata taaaaatagg agtacggtta tattgggaaa      5760
     ggctatggtt aacataccgg gacgtaaaac tccgagaaat caaatttgat acccacaagt      5820
     ggaaagatcg tgaaaacaat gccgaacagc gagtgctaac acgacttcga ataggtcata      5880
     cacgattaac gcacagtttt cttttgtcaa aagaatcacc tcctaactgc gaatgctgtg      5940
     gcactactct agacgtacgc cacattgtgc tacattgcca gaagtatgac gatgtcagac      6000
     agaaatatga aatcaacact aacagcttaa gaagtgcatt gaaaaacgat gatgagggag      6060
     aaacaaagct gataaaattc ctacgagaca ctaagttgtt tgaaaagttg taaagttgct      6120
     ttttgtagta cataatgtta atttaattca ttctgatacg aatgcaccat ctaaatggtg      6180
     taaagtatcg ttaaataaaa aaaaaaaaaa aaaa                                  6214
//
ID   I_Ele22     repbase;    DNA;    INV; 7434 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele22.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7434
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7434
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           3602..7171
FT                 /product="I_Ele22_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MLVRDRQPAIIALQEIHRTTPTMMNNTLGKKYLWYTK
FT                 IAANLYHSVAIGVSTDLSAELIDVNSDLPITAIRLSWPIPISVVSLYLPNG
FT                 KIPDLESRLISAFNQIPEPKMILGDLNSYHRAWGSRSNNARGSIIVSIASQ
FT                 CDLTILNDGSGTFFRGQVESAIDVSLVSAAITNRFLWSAESEYRGSDHVPI
FT                 LLTLENSFAPETTRRPRWKYEKADWSEFQMTLDNELDISPSASLSDFSALI
FT                 NKVASATIPKTSSKPGRRALHWWNENTQKAVKARRKALRAAKRARKQFPDD
FT                 NPERAIILANYRDARNTCRQTIREAKEKSWSEFLDTINEDQSSSELWRRVN
FT                 SFQGKRRIKGMALKIDGTTTRNPHVIADALADYFHSISSHQRYPEKFIKRH
FT                 SIANEAVHRFLVPPDQGQAFNIPFTMKEMEYALQKAKGKSAGPDDIGYPML
FT                 KRLSPRGKITFLQMINNEWTAHTLPESWKHSFVIPIPKSSGPINDVGSYRP
FT                 IALTSCVAKIMERMVNRRLIEFLEENRKLDHRQHAFRSSYGTGTYLASLGQ
FT                 ILDDAARNGDHVEIASLDLAKAYNRAWAPGILSKLVSWGISGNLLAFVKNF
FT                 LDGRTFQVLLGNHKSKTVTEETGVPQGSVIAVTLFLVAMSGVFLVLPKGVF
FT                 ILVYADDILLIVTGKHPKSIRRKLQAAVSAVAKWSQEVGFDISAEKCARLH
FT                 VCESKHIPPRKPLTVNGVPMPTRKYTKILGVTIDRHLKFHCHFNKIKEACK
FT                 NRVSMIRSISGKRTRSDRQTRLRVADAVVCSRLFYGVELTCRSFEYMVQQL
FT                 SSTYNNTIRALSGLLPSTPASAICVEAGVLPFRYRAAMSICCRAVSYLERT
FT                 EDDGQVCFLAGQANHALTAVAGSVLPPVAGLHRVGPRSWRAREPLIDNAIK
FT                 FHFRKGSNPTQVLANFRHRIQNKYRYADIRYTDGSKLAGRVGFGIYGTNLE
FT                 QSHRLPNQCSVFSAEAAAILTAILEPSENHILIVTDSASSLQALKSSNNKH
FT                 PFIQAIQAELDNERTSTTFMWVPGHCGIPGNERADAAASIGRQSRIFCNEI
FT                 PGDDIRKWIKNTLWDAWASEWHQERSLFIRRIKNEVVPWNDLPNWKEQKVL
FT                 SRLRTGHTRASHNMGDSRNFRKICETCNTQNTVQHFISDCPTLEYLRMQHD
FT                 ITSISRALQNDAVCERTLLNFLKEARLFNEI"
FT   CDS           join(412..2115,2112..3566)
FT                 /product="I_Ele22_1p"
FT                 /translation="MSLANGYPLLLGDPGGPGGRGGGPSNYINGDYTGARL
FT                 PHYMDNDGTAGQLQYLKMQAVSGQIPQDPFLLRLSVEKCIGGQIDGAYKEQ
FT                 QGLSYVLKVRSQTQFNRLLKMNKLNDGTAISITEHPQLNQTKCVVSNADCT
FT                 KLDDEYLKQQLAAQGVKDIRRIKRRKPDGTSENTPTIVLTLSGTVIPPHID
FT                 FGWTRCKTRNFYPTPMLCYRCWEYGHTGKRCTHPTRVCGRCSKVHEEENQK
FT                 LNEQSNIRSMEQDESLSTPTSSMSERIPCTEAAYCKLCKTSDHSVSSRKCP
FT                 VYLKEVAIQHIRVDRGISYSQATREYEARMGASRSNSTYTGVVNASKDSEI
FT                 EDLKAVVEQLRTDAKAKDARIAEMELSPQNRGVHDRMQAVREHGTIEDLIR
FT                 QVSELTATIEKLQQDLRRKDQFILDLMARQRTPEAESCVEIICETPEQQRN
FT                 ALSDSSAEIPPTASFTDPIVNKKVAKWVNAIGTHKDTGTNPKKIAKDTKNK
FT                 KKLNNDGNSTDGSMESIISGHSVCTMDSSSTHPSNSGKRNHEESEASNNSS
FT                 TSSPNAKRHSKVRKAKATNKNKLTSRYAQSFQYDLQYNTVILISFTFTPNE
FT                 PPNNDQDSRKSTEQTLQSPQSLPSNTPKHKSSQEASSSRGPVSAEATPQPE
FT                 LADNPRRSSDLSVSGTHKGSTTRSPPCPDYGRDRQGPARAEAMVVPGLAEP
FT                 PCHPDHAGRGTHKGTKTCSPLDDEGCKQTGLSPYAPVFVPRARLKSHTFSS
FT                 KGGSQSIPPKHDQESQKTNRKSRTKTCNKPVHRRSTGHSASTTTDLFPPLG
FT                 PEVCNSDLYDNLHKTRYGESAIIVPGTAASSYRNAAPGPAPRAAGPARRAR
FT                 RAAGPGAGGRAAARPPGRGPPRAGAGGRRAPGPGGRPPPAPPGAAARGPPR
FT                 GGAGAPPAPGRAPARARPRARPAAPPGAAARRAPPPRPRPGAPARPPARGG
FT                 AAETSLGTLGLKTQAVSPTLPNGLQPPTLQTCFYRPSGYLYLWRVVRHHLP
FT                 LVELYLVRPTIPTQHELTAASVRNLPLVQLLTAHHTVAGPFLPHSGI"
XX
SQ   Sequence 7434 BP; 2094 A; 2000 C; 1740 G; 1598 T; 2 other;
     cagtttttgc tcgggctatt accgcgtgat caagtgcaca tatcgtgtcg cgatttccaa        60
     cagtccgaac ggtcgaaata tccaaagata atcatcaata gttggtgatt catatagctt       120
     atcttcgaat ctaacggtgt gagttggaaa acactaaaaa cactgtctgt gaggtgtgaa       180
     aaaagacatt gtagctgcct gtatatgcca gcagcagaca atttgttgtg acacaccacc       240
     aaagcgcgcc gcgtgtgaag taatagagat aaagacaacc cgatcaaaaa tagcaaagtg       300
     atcgaagtga aaaaatcatt caagtttttg ttcgaaaaga aacaagtgta cagtggtgta       360
     atatctgagt gcggtgttga ttgttaggag tttcccaacc gtctcgccgg catgtcgctg       420
     gcgaacggct acccactcct cttaggggac ccagggggcc ctggaggtag aggaggtggc       480
     ccatcgaact acatcaacgg cgactatact ggcgctcgtc tcccacatta catggacaat       540
     gatggcacag ctggacagct acaatacctg aaaatgcagg ctgtatctgg acaaataccg       600
     caagatcctt tcttgttacg attgtccgtt gaaaaatgca ttggtggaca gattgatggt       660
     gcatacaaag aacaacaagg actctcctat gttctgaaag ttcgcagcca gacacaattc       720
     aaccggctgc tgaaaatgaa caaactgaat gacggaacgg ctatcagtat cactgaacac       780
     ccgcagctca accagacgaa atgcgtggtt tcaaatgctg actgtacgaa actggatgac       840
     gagtacctca aacaacagct tgctgcacaa ggcgttaagg acattcgtcg gattaagcgt       900
     cgcaaaccgg atggcactag tgaaaacaca ccaacaatcg ttctcaccct tagtggaacc       960
     gttatacctc cgcatatcga ttttggatgg acgcgctgca aaacgcgtaa cttctaccca      1020
     acaccgatgt tgtgttaccg ttgctgggag tatgggcaca cgggtaagcg ttgcacccat      1080
     cccacccggg tctgtggacg atgcagcaag gttcatgagg aggagaatca gaagctgaat      1140
     gaacaatcca atataagatc gatggagcaa gatgaaagtc tgtcaacacc taccagcagc      1200
     atgtctgagc gcataccgtg taccgaagct gcttattgta agttgtgtaa aacaagtgac      1260
     catagcgttt ccagccggaa atgtccagtt tacctcaaag aagtggcaat tcaacacatc      1320
     cgtgttgata ggggtatatc gtattcccaa gccacacggg aatacgaggc ccgaatggga      1380
     gcgagtagga gcaacagcac ctacacaggt gtcgtgaatg ccagcaagga cagcgaaatc      1440
     gaagatctca aagcagtagt cgaacaatta cgaactgatg cgaaggcgaa agatgcgaga      1500
     atcgcggaaa tggagctttc accgcaaaac cgcggcgtcc acgatcgcat gcaggcagtt      1560
     cgtgaacacg gtacgataga agatctaatt cgacaagttt ctgaactgac tgctaccatc      1620
     gaaaagctac agcaagactt gcgaagaaaa gatcagttca ttttggatct tatggccagg      1680
     caaagaaccc cagaagcaga atcctgcgtt gaaattatct gcgaaacccc agaacaacag      1740
     aggaacgctc tgtcggactc ctccgctgaa ataccgccca ccgcctcttt taccgaccca      1800
     atcgtgaata aaaaggttgc caagtgggtc aacgccattg ggacccataa ggataccgga      1860
     accaacccaa agaagatcgc gaaagatacg aaaaacaaga aaaagctgaa caacgacggt      1920
     aattcgacag acggcagtat ggaatccatc atctccgggc actcagtgtg tacgatggac      1980
     tcgtccagca cgcatccgtc gaattctgga aaacggaacc acgaagaatc cgaagcaagc      2040
     aacaactcgt caacaagctc accgaatgcc aagcgacata gcaaagtccg caaggcaaaa      2100
     gcaactaata aaaattaact tcgcgatacg ctcagtcctt ccagtacgac ctgcagtata      2160
     atactgttat tctcatctca ttcacgttca cacctaacga accacccaac aacgatcaag      2220
     atagcaggaa gtcgactgag caaacattac aatcacccca atcactacca tcaaacacac      2280
     caaaacacaa atcatcacag gaggcctcga gtagccgggg ccccgtcagt gcggaagcta      2340
     caccccaacc ggaactggcg gacaaccccc gacgctcaag tgacctttct gttagtggga      2400
     cgcacaaggg ctctacaacc cgttccccac catgcccaga ctatggtcgg gacaggcaag      2460
     gccccgccag ggcggaagct atggtcgtac cgggtctggc ggaaccccct tgtcatcctg      2520
     atcatgctgg aagagggacg cacaaaggta ccaaaacctg ttcccctttg gacgacgagg      2580
     gatgcaagca aaccggattg tcaccttatg ctcctgtttt tgttccccga gcaaggctaa      2640
     aaagtcacac cttctcctca aagggtggtt cgcaatcgat ccccccaaag cacgaccagg      2700
     aaagccagaa aacaaatagg aaaagtcgta ctaaaacctg taacaagcct gtgcatcgcc      2760
     gatcgacagg acattccgca tcgacgacaa ccgacctctt cccccctcta ggaccggagg      2820
     tttgtaactc tgatctttac gacaatctac ataaaactcg ttacggagaa tcggccatca      2880
     ttgtacctgg tacagctgct tcctcgtacc gaaatgcggc cccgggcccc gccccgcgcg      2940
     ccgccggccc ggcccggcgc gcgcgccggg cggccggccc cggcgcgggg gggcgcgcgg      3000
     ccgcgcggcc cccggggcgg ggcccgcccc gcgcgggggc gggggggcgg cgggcccccg      3060
     gcccgggcgg gcggcccccg ccggccccgc cgggcgccgc cgcccggggg cccccccgcg      3120
     gcggcgccgg ggccccgccg gcccccgggc gggcgccggc ccgggcgcgc ccgcgcgccc      3180
     gccccgcggc cccccccggc gccgcggccc gccgggcgcc cccgccccgc ccgcgccccg      3240
     gcgcccccgc ccggcccccc gcgcgcggcg gcgccgcaga aacctctctg ggcaccctgg      3300
     gcctcaaaac ccaggcggta agccccaccc tgccaaacgg actacaacca ccaactcttc      3360
     aaacttgctt ttaccggccg tcgggatatc tctacctttg gcgggtggtt cgccaccacc      3420
     ttccactggt agagctctat cttgttcggc ccacaatacc aacacaacac gaattaacgg      3480
     cagcatcagt caggaatcta ccgttagtgc aacttctaac agcacatcat acggtggccg      3540
     ggccattttt gccacacagt ggaatataaa cggatttttt cgtaatctcc cggatctcga      3600
     aatgttggta cgcgatcggc aacccgcgat aattgcgctc caagaaatcc accgaacaac      3660
     acctactatg atgaacaata cattgggaaa aaaatatcta tggtacacca aaattgctgc      3720
     caacctgtat cattcggtag ccatcggagt atctaccgat ctctcggctg agctgattga      3780
     tgtgaactcg gacctgccga taactgctat tcgtctgtca tggccaatcc ccatctctgt      3840
     agtatctctt tacttgccta acggaaagat acccgatttg gaaagtcgac ttataagcgc      3900
     cttcaatcaa attccggagc caaagatgat actgggtgac ttgaacagct atcatcgggc      3960
     atggggtagc cgctccaata atgcacgtgg ttcaattatc gtcagcattg ccagccagtg      4020
     cgatttaaca atccttaatg atggctctgg tactttcttc cgcggacaag tcgaatccgc      4080
     aattgacgtc tcacttgtgt cagctgccat cacgaaccgc ttcctctggt ccgcagaatc      4140
     tgaatatcga gggagtgatc atgtacctat tcttctcact ctagaaaata gctttgcccc      4200
     cgaaacaaca cgacgtcctc gatggaaata cgagaaagct gattggtcag aatttcaaat      4260
     gacgcttgac aatgaactag atatatcccc ttcagcttcc ctctcagact tttctgcttt      4320
     gattaataaa gttgcctctg ctactattcc aaaaaccagc tcaaaacctg gacgacgcgc      4380
     tctccactgg tggaacgaaa atactcaaaa ggctgttaag gctcgcagaa aagctctccg      4440
     ggccgctaaa agagccagaa aacagttccc cgatgacaac ccagaaaggg ccattattct      4500
     tgcaaactac cgagacgccc gcaatacatg ccgtcagacg atcagggagg cgaaagaaaa      4560
     gtcctggtcc gaatttctgg acaccataaa cgaggaccaa tcgtcatctg aactatggcg      4620
     acgagtaaac agcttccaag gcaagagacg aatcaaagga atggcactca agattgatgg      4680
     tactacaaca agaaaccccc acgtaatagc agacgcactg gcggactatt tccatagtat      4740
     ctcttcacac caacgctacc ccgagaaatt catcaaacgc cattcaattg ctaatgaagc      4800
     ggtgcatcga ttcctggtcc cacctgacca aggacaagct ttcaacattc catttaccat      4860
     gaaagaaatg gagtatgccc tacagaaagc aaaagggaaa tcagccggcc cagatgacat      4920
     tggatatccg atgttgaaac gcctctctcc aaggggtaag ataacttttc ttcaaatgat      4980
     caataacgaa tggacggctc acacccttcc cgaaagctgg aaacacagtt tcgtcatacc      5040
     cattccaaaa tcatccggtc cgataaacga tgtcggcagc tatcggccga tcgccctaac      5100
     cagttgcgtc gcaaaaatta tggaaaggat ggtgaaccgc agactaattg agttcctgga      5160
     ggaaaaccga aaactggacc atcgacaaca cgctttccga tccagttacg gtaccggaac      5220
     gtatttagct tctctcggac aaatcttgga tgatgctgca agaaatggag atcacgtcga      5280
     gatagcatcc ttggatctag ccaaggctta taatcgagcc tgggcccccg gaatcctaag      5340
     taagctggtc agctggggta tctctggaaa tctgcttgcc tttgttaaaa acttcttgga      5400
     tgggcgcact ttccaagttc ttctagggaa ccacaagtcc aaaacggtca ctgaggaaac      5460
     aggcgtcccg caagggtctg tgattgcggt taccctattt ctggtggcca tgagtggagt      5520
     ttttcttgtg cttcccaaag gagtgttcat cttggtttat gctgacgata ttcttcttat      5580
     tgtcaccggg aagcatccta agagtatcag gcgcaaacta caggctgcgg tttccgccgt      5640
     tgccaaatgg tcacaggaag tcggtttcga tatatcggca gaaaaatgcg caagacttca      5700
     tgtatgtgaa tcgaagcata ttccgccacg caagccgctg acagtaaatg gcgttcctat      5760
     gccaacgaga aaatatacca aaatcctcgg cgtcaccatc gaccggcatt tgaaatttca      5820
     ttgtcatttc aacaaaatta aggaggcctg taaaaatcga gtgagtatga ttagaagcat      5880
     ctctggaaaa cgtactagga gcgataggca aactcggcta cgcgtggccg acgctgttgt      5940
     atgcagtcgg ctgttttacg gtgttgagct tacctgccga tctttcgaat acatggtgca      6000
     gcaactttcc tcaacctata ataacacaat tcgtgcactg tcgggccttc taccttcgac      6060
     cccggcttca gcaatctgtg tggaagcagg cgttcttcca ttccgataca gagcggcgat      6120
     gtccatatgt tgtcgagctg taagctacct agagcgaact gaggatgatg ggcaggtttg      6180
     cttcctcgct gggcaagcga atcacgccct taccgctgtg gccggatccg tgcttccccc      6240
     ggtggccggg ctccaccgtg ttgggcctcg aagctggaga gccagagaac cacttatcga      6300
     caacgctatc aaattccatt tccggaaggg ttcaaatcct actcaggttc tagctaactt      6360
     tcgccataga attcaaaata aataccgata cgctgatatc cgctatacgg acggctctaa      6420
     actagcaggt cgggtgggtt tcggaatcta cggtacaaat ttagaacaat cacaccgttt      6480
     accgaatcaa tgctcagttt tctccgctga agcagccgcg atcctcacag caattttgga      6540
     acctagtgag aaccacattc ttatagtcac cgattctgcc agttcgctac aagcactgaa      6600
     atccagcaac aacaaacatc ctttcattca ggctatccag gccgagctag acaacgagag      6660
     aacatcaaca accttcatgt gggtccctgg tcactgcggt ataccgggca atgagcgtgc      6720
     agatgctgct gctagtatag gtcgacagag caggatattt tgtaacgaaa ttccgggaga      6780
     tgatatcaga aaatggatta aaaacacgtt atgggatgca tgggcaagcg aatggcatca      6840
     agaaagatca ctattcataa gacgaatcaa gaacgaggtt gtaccttgga atgaccttcc      6900
     aaactggaaa gaacagaaag tattatctcg ccttcgaaca ggccatacac gggcatctca      6960
     taatatggga gacagccgaa attttcggaa gatctgtgaa acgtgcaata cgcaaaacac      7020
     agtacaacat ttcatcagcg attgtcctac acttgaatac cttcggatgc aacatgatat      7080
     cacatctatc agtcgtgctc tccaaaacga tgcagtatgc gaaagaactc ttctaaactt      7140
     cctcaaggaa gctagacttt tcaacgaaat ttagcaaatg ctcaacgctt gaaccttcgt      7200
     cgatacggaa gtacttggaa gatcatacaa cgcaagatag aatcggccta gaaaggacac      7260
     cactacatca gattgattaa cagtatagtk ttaaagagct tcagttttgt tcatatttma      7320
     aactctgtat tgctagaaga tacccttcag gtacttcttg atttcctatt ttctaaagag      7380
     atgagccagc ctcgggctgc aaatctctta aataaagata tctatctatc tatc            7434
//
ID   I_Ele24     repbase;    DNA;    INV; 7504 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele24.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7504
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7504
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >91% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           883..2619
FT                 /product="I_Ele24_1p"
FT                 /translation="MATGLGGPPWGDYPPLSQDQGDSYHAGPTLPGFMDRD
FT                 GFYGELRFLRIQGIDGRPLPEAPFMIRKSVHKSAGGKIEGAFPESGGKTYA
FT                 LKVRQLTFYQRLLDMKKLNDGTPIEVIEHPGFNQTRCVVSCREVVNVDVNV
FT                 LLEEMQEQGVKEIRRILRRAGGKQINTPTLIVTTRGTVRPEFLDFGFIRCR
FT                 TRPYYPSPMQCFSCWAFGHTRSRCNSSPICGRCAQNHAFEPEHPCIAAKYC
FT                 KKCESSDHGVGDRSCPEYIKEGDIQRIRVDSNLSYAAARRKYEEAHGTRSY
FT                 ANMTAVPGFTSLNNQNDLASLHRKIDSLIATIEKKDQRIEQLEAALAQRSS
FT                 TAATTSVPNVSSQTGDDMPTFMKLFLDRQEQMFGNTVKKMWESNLRMQKDI
FT                 LELQSRSELPSDEQIYLPAPLQANTASLSTLPTRMIAATKSTPTASAVLPN
FT                 STMESSEKSSPTPTNIKDKSNTDPLNNVTPNPVSPATKTIAIDDSSHDLNS
FT                 DVSSNSSSSPNQNLLSHNSTPRPSPKTPVQSENIPKAPLRAVSPGSANKRT
FT                 LRDISPDRVINAQTVSKQQRRSLPRSGHVKKS"
FT   CDS           2598..7109
FT                 /product="I_Ele24_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="KRPCQKVLIAFPAKNITQTMTDPCTTPEHNSNTANND
FT                 KPFSNFAPDSRGTFGPEVKPQPEPQDRPRRSSCETNENLIRNSASGSRSTG
FT                 RPEVMPPPERPERLRCPMDEDAINAKKNPTISPGSWRPDSADVLPTPELAN
FT                 HLQRRREVEGGTDKGQPTYSPQDDEGSEALVIVGTHKGSNPRTPKDSVGSK
FT                 SYAAHSNPRNSTPGHPEHLNSGGKSHHAIPHPIVSNPPAESSPSSSIDGSL
FT                 SFAAPATNPLPIHLPANQVASFQRQSRHRYGSRPYRQTSYNRSRGSSISET
FT                 YHPTPALPKPVNILLQWNINGFFNNLANLELLTSSTTPWCLALQEVNRVTT
FT                 EQLSRSLRGQYRWALFRGTNLRHSVAVGVLASIPFEVLRLETDLPAVGVRL
FT                 HGPFNISVVNIYIPCGAQPNLQEQLHRLLEATPDPVLLVGDMNAHHPIWGG
FT                 QRTDNRGTSLLHVFEEHDLIVLNNGSNTFLKGNSASAIDLAAASRSCTNRF
FT                 HWNVDSDLHGSDHYPIHIATNVAPPATTRRPRWLYEKADWDNYEQTFRNSS
FT                 RGRESAHLQELTDIINKAAKSSIPRSSNQPGRKALHWWTDHTRIAVKARRK
FT                 ALRAVKRIPIGDPSRENALNLYRSRHSECKKIIADAKRNSWENFLDSINAS
FT                 QTSSALWTRVNALSGKRKTKPLTLRIENSHISDPSTVARILGEYFASLASV
FT                 DSYTDSFKRRMQPTISSVPTFPVPDDPENLLINQPFSISELLFALKCCTGK
FT                 SAGPDGIGYPLIKNLPPSGKLQLLELMNKYWLTDTFPPEWRESLVVPIPKS
FT                 NAETHDPSKYRPIALTCCMCKVMERMVNRRLKQFLESQDLLDHRQHAFRAG
FT                 HGTSTYFAQLGDVLHTAQSEGLHTEIVSLDLSKAFNRTWTPLVLRQLVEWK
FT                 LSGHILRFVQNFLSERSFRVIVGDYLSDSFPEETGVPQGSVIAVTLFLIAM
FT                 NSVFLTLPKGIYVFVYADDILIVVSGKTPVRVRIKAQAAVNAIFKWTTATG
FT                 FELSAPKSVRCHVCPTNHRISVPISINGQRIPTKKTVKVLGVTIDRALTFQ
FT                 HHFDLVKQSCRTRLNLIRTISRPHRSNNRNIRFRVAHAIVDSRLTYGLELT
FT                 CIARERLITTLAPLYHGYIRIISGLLPSTPADSACTEAGLLPFRFFISAVI
FT                 CKKTAAIIEKTIGDDRICLLTEGNSILRTAANVDFPPVARIHWNGDICWLS
FT                 PKPNVDSTIGNQFRAGDNSIALRTTVLDWLRTKYPNHDHRYTDGSLSMRGV
FT                 GLGVFGANISVSLSLPPLCSIFSAEAAAVYLAATTPSDRPIIVLTDSASVV
FT                 SALQSNRPSHPWIQRTITDARPNTTFAWIPGHCGIAGNTAADRLAGAGFSC
FT                 PRYEDNVPFDDVKRWLTKQFRSTWSMEWNQQNSPYLRKVKSSTERWKDLPL
FT                 LKEQQLVSRLRTGHTRFSHNMSGNGSFRRMCSYCHIRNTVEHVICVCPLYE
FT                 FSRNIHGISRSIREALGDDVAALEALLRFLKDSGLYNMI"
XX
SQ   Sequence 7504 BP; 2051 A; 2027 C; 1613 G; 1812 T; 1 other;
     cagttagcat caagcatcgc ttgcgtgcgg acgtttttcg tttatcgctg gtcgatttta        60
     ttgcgtcgat attcttttaa tagtttttta ttaactgtta cttttgtgcg tgtgtttatt       120
     tttactacgg ggttccgtat tttaaagcgg ttgtgtttta cttgagaaac ataacttgtt       180
     acgcgtaacg tcgggagtgt gaaaactacc gcgaaagtgt ctagaccaag ccgtctcaaa       240
     tagaccggct ctaggagacc tctccatata gaaaaacgac cctctgggtc gaacgatacc       300
     ccctcaatcc cagtgcttct tagggaggag ggggtgtgtg taacagaatc aggctagctg       360
     tagccgtatc attcactgcc agtgtggtat agtggcttaa aaagtgcaaa aatagcaaac       420
     tgcttcaact ttgaccgata gtgaacttac agattgcgcg tgtgtatctt ttcgcacaaa       480
     ggttgttttt acatatcggt ggctcatcat aaccaccgcc caaagaggaa tacgaaagaa       540
     gaccagtgag tttgacgtgg atagatagag tttgctcact ctcaagccgt ggtgcgcctt       600
     tccccagagg ggccactctg ataggggaaa aagtatcaaa acgattcgaa aagtgtgatt       660
     ttgtgaagtg gtgaaaatct actttttccg aaggaaaata atccgttgaa aaagcgtttg       720
     aaagaataca tctccgccaa ctttcaagct tgtgttgtgt tgtgcttatc ccagaaaagc       780
     cttcaacgcc tacatcgagg aaagatcata cgggaacgcc gtcagaacat tcatcggtga       840
     gttactgggg ctttatccgg gtttttcttg ggggtcgcct tgatggcgac gggtctgggg       900
     ggccctcctt ggggggatta cccccctttg tcacaagacc agggcgatag ttatcacgct       960
     gggccaactc tgcctggttt tatggatcgg gatggatttt atggggaatt acgtttcctt      1020
     cgcattcagg gtatcgatgg gagaccttta ccagaggccc ctttcatgat aagaaaatct      1080
     gtacacaaat cagcaggcgg aaagattgaa ggagcctttc ctgaatcagg aggtaaaaca      1140
     tacgccctta aggttcggca actgaccttc taccaaaggc tgctcgacat gaaaaaactc      1200
     aacgatggaa cacccataga agtaattgag cacccaggct ttaaccaaac gcgctgtgtt      1260
     gtttcttgcc gtgaagtggt gaacgtggat gttaacgtgc ttctggaaga aatgcaggaa      1320
     caaggcgtga aagaaattcg gaggattctc agaagggccg gcggaaaaca aatcaatacc      1380
     cctactctta ttgtcacaac cagaggaaca gttcgacctg aattcttgga cttcggtttt      1440
     attcgttgtc gtactcgccc ctattaccca tcacccatgc aatgtttttc ttgctgggct      1500
     ttcggtcata ctcgatctcg ttgcaattcc tctcccatct gtggaagatg tgcacaaaat      1560
     catgctttcg aacctgaaca cccgtgcata gctgcaaaat attgtaaaaa atgcgaatcc      1620
     agtgatcatg gtgttggcga tcgttcatgt ccggagtata tcaaggaagg cgatattcaa      1680
     cgcatacgtg tagactccaa cttatcctat gctgctgccc gtcggaagta tgaggaggcc      1740
     catggtacgc gctcttacgc caacatgaca gcggttcccg gtttcaccag tctcaacaac      1800
     caaaatgatc tagccagtct tcaccgcaaa atcgactctc ttatagctac catcgaaaaa      1860
     aaggatcagc gcatagaaca gcttgaagct gcgcttgcgc aacgctcgtc tactgctgcc      1920
     accacctcag taccaaatgt ttcttcccaa actggagacg atatgccaac ttttatgaag      1980
     ctcttcctag atagacaaga gcagatgttc ggaaatacag tcaaaaaaat gtgggaaagt      2040
     aatcttagaa tgcaaaagga catccttgaa ctacaatcac ggtctgaact tccttccgat      2100
     gagcagattt atttgcctgc ccctctccaa gcaaacactg cttccctctc aacactacca      2160
     actagaatga tcgctgcaac caaatccaca cctactgcct ccgcagttct gccaaatagc      2220
     accatggagt ccagtgaaaa atcttcccca actccaacca acatcaagga caaatctaac      2280
     accgaccctc tcaacaacgt aacccccaat ccagtaagcc ctgccactaa aaccatagca      2340
     atcgatgatt cctctcacga tctaaactct gatgtctcgt ccaactcaag tagcagccct      2400
     aatcaaaacc tactcagcca taacagtacc cccagaccct cccctaaaac ccctgtacag      2460
     agcgaaaata tacccaaagc cccactgcgt gcggtatctc ctggttctgc caacaagcga      2520
     accttaagag acatctcacc cgacagagtt ataaacgcac aaaccgtttc gaaacaacag      2580
     cggcggtcac ttcctagaag cggccatgtc aaaaagtctt aattgctttc cccgcaaaaa      2640
     acataactca gacgatgacc gatccctgta caacgcccga acacaacagc aataccgcca      2700
     acaacgataa gcctttttcg aactttgcac cggacagtcg aggcaccttt ggaccggaag      2760
     taaaacccca accggaacct caggaccgac ctcggcgttc gagctgcgag acgaacgaaa      2820
     atctaatcag aaacagtgcc tcgggtagcc ggagcaccgg aagaccggaa gtcatgcccc      2880
     caccggaacg gccggagcga cttcggtgcc cgatggacga agatgcaatt aatgcgaaga      2940
     aaaatccaac gatatcccct ggtagctgga gacccgacag tgcggacgtc cttcccacac      3000
     cggaactggc gaaccacctc cagcgccgga gggaagttga aggagggacg gacaaaggtc      3060
     aaccaaccta ttcccctcag gacgacgagg gaagtgaagc cttagttatt gtcgggacgc      3120
     acaaggggag taatcctcgt accccaaagg actccgtggg aagcaagtcg tatgcagctc      3180
     acagcaaccc tcgaaacagc actcctgggc accccgagca cctcaactcg ggcggtaagt      3240
     cccatcacgc tattccccat cccattgtat caaatccccc agcggaaagt tcaccgtcat      3300
     cttccatcga tggatctctg tctttcgctg ctcccgcaac gaatccccta ccaattcatt      3360
     tacctgcaaa tcaggtcgca tcgttccaac ggcagtccag gcaccgttat ggcagcagac      3420
     cctacagaca aacttcgtac aatcgtagcc gtggctcatc gatttccgaa acctatcatc      3480
     ctacgcctgc actcccaaag ccagtcaaca tcttacttca gtggaatatc aacggttttt      3540
     ttaataacct cgcgaacctg gagcttctca caagttcaac tacaccatgg tgcttagctc      3600
     tgcaagaagt gaacagggtc acaaccgaac agcttagtcg atctcttcgt ggccaatacc      3660
     gttgggccct ctttcgaggt accaacctaa gacattccgt tgcagtcgga gtcttagcct      3720
     caattccttt tgaagtcctt aggctcgaaa ccgaccttcc agccgttgga gtgcgtctcc      3780
     atggaccatt caacatcagt gtagtaaaca tctatattcc ctgtggtgcc caaccaaatc      3840
     ttcaagaaca gctccataga ctccttgaag caacaccaga tccagttctg ctagttggtg      3900
     acatgaatgc ccaccatcca atatggggcg ggcaacgcac tgataatcga ggaacctctc      3960
     tactacatgt cttcgaagaa cacgatctca ttgtcctcaa caatggatca aatacctttc      4020
     tcaaaggaaa ctccgcatcg gctattgacc tggctgcggc tagccggtcc tgtaccaatc      4080
     gattccattg gaatgttgac tccgaccttc atggtagtga tcattaccct attcacattg      4140
     ctaccaacgt cgctccaccg gcgaccactc gtcgtccaag atggttatat gaaaaagccg      4200
     attgggataa ctacgaacaa actttccgga attcatctag gggtcgcgaa tctgcccatt      4260
     tgcaagagct cactgacatt attaacaaag ctgccaagtc ctccataccc cgcagcagta      4320
     accaaccggg tcgcaaagca ctacattggt ggaccgatca cactcggata gcggtaaagg      4380
     ccagaaggaa agcattacgc gccgtcaaac gcattcccat aggcgatcct agcagggaga      4440
     atgctttgaa cttataccga agccggcaca gtgaatgcaa aaagatcatt gcagacgcca      4500
     aacgcaatag ttgggagaac tttctggata gcataaacgc atcacaaact tcatctgccc      4560
     tctggactcg agtaaatgcc ctcagtggca aaagaaagac aaagcctctg actctccgta      4620
     ttgaaaactc gcacatctct gacccctcaa cggtagctag aatcctcggc gaatacttcg      4680
     ccagcttggc tagtgtagat agctatactg atagcttcaa gcgtcgtatg cagcccacca      4740
     tcagctcagt ccctaccttt cccgttcctg atgacccaga aaacttgttg ataaaccaac      4800
     cattttcaat tagtgagctt cttttcgcac tcaaatgttg taccggaaaa tctgccggcc      4860
     cggacggcat tggttaccca cttataaaaa accttcctcc ttcgggtaag ttgcagctat      4920
     tagaacttat gaacaaatat tggctcactg acaccttccc cccggaatgg cgggaaagtc      4980
     tcgtggttcc cattccaaag agtaatgcag aaacccacga cccatccaaa taccgaccga      5040
     ttgctctaac ctgctgcatg tgcaaggtga tggaacggat ggttaaccgg aggctgaaac      5100
     aatttttgga gtcccaagac ttgttggatc atcggcaaca cgccttccga gctgggcatg      5160
     gaacaagcac ttactttgcc caacttggcg acgtcttaca cacagcgcag tcggaaggct      5220
     tacacaccga aattgtctca ttggacctgt ccaaggcctt caatcgaaca tggaccccgc      5280
     tagtgctacg tcagctagtt gaatggaaac tatcgggtca cattctgcga tttgtccaaa      5340
     acttcttgtc tgagcgatct ttccgagtca ttgttggaga ctacctatcc gactcctttc      5400
     ccgaagagac cggcgtgcca caggggtccg ttatagctgt cacactattc ttgatagcaa      5460
     tgaacagcgt ttttcttacc ttaccgaaag gmatctatgt attcgtatac gctgacgaca      5520
     tactcattgt cgtctccggc aaaaccccag tccgcgtcag gatcaaggca caggcggcag      5580
     ttaacgcgat cttcaaatgg accactgcaa ctggtttcga gctgtccgcc cctaaaagtg      5640
     taagatgcca cgtctgtccc actaaccacc gcatatccgt acccataagt atcaacggtc      5700
     aacgcatccc cacgaagaaa acggtgaaag tgctcggcgt cactattgac cgagcgctca      5760
     ctttccagca tcactttgat ttggtcaagc aaagctgccg cacgcgcctc aacttgattc      5820
     gaacaatctc tcgccctcac cgctcgaaca accgtaatat ccgtttccgc gttgcgcatg      5880
     ccattgttga cagccgatta acatatggcc ttgagctaac gtgcattgca agggaacgat      5940
     taataacaac actcgcacca ctgtaccatg gatacattcg catcatatcc ggacttcttc      6000
     catccacgcc tgctgactct gcttgcactg aagctggcct ccttcctttc cgcttcttta      6060
     tatccgcagt gatttgcaaa aaaaccgctg ccattatcga aaaaacaatc ggggacgaca      6120
     ggatctgcct cctcactgag gggaacagta tcctccgcac tgctgccaat gtagatttcc      6180
     ccccagtggc caggatccac tggaatggag acatttgttg gctttcacct aaacctaacg      6240
     tagatagcac gattggaaac cagtttcgtg ctggggacaa ctcaatagct cttcgaacaa      6300
     ccgttctgga ctggctacgc acaaaatatc caaatcatga tcacagatac accgacggtt      6360
     ctctttccat gagaggcgtc ggccttggcg tcttcggcgc taatatttca gttagcctta      6420
     gtctgccacc actttgctcg atattctcag cggaagccgc agccgtgtat ttagcagcca      6480
     ctacaccatc cgaccgacca ataattgttc ttacggattc agctagcgta gtatccgcat      6540
     tgcagtcaaa caggccttca cacccttgga ttcagcgcac gatcaccgat gctcgaccca      6600
     acaccacctt tgcatggatc cccgggcatt gtggtatagc cggcaacaca gctgccgatc      6660
     gtctagctgg tgctggtttt tcctgccccc gctacgaaga taatgtaccc ttcgatgatg      6720
     ttaaaaggtg gctaacaaag caattcagga gtacatggag tatggaatgg aatcagcaaa      6780
     attcaccgta cctacgaaag gtgaaatcgt ccaccgaacg gtggaaagac cttcctcttt      6840
     tgaaggaaca acagttggta tctcggctga ggacggggca cacgcgtttt tcacacaaca      6900
     tgagtggcaa tggatctttc cgccggatgt gttcctattg tcacataagg aataccgtag      6960
     aacacgtaat ctgcgtctgc ccattatacg agttttccag gaatattcat gggatctcaa      7020
     gaagcattcg tgaagccctg ggagatgacg tagcagccct ggaagcccta ttgcgttttt      7080
     tgaaagattc tggcctatac aacatgatct gacgcccacg ataacaaact gctacaagta      7140
     tcactttttc gtgtccgtcc tattagtcca ccagctacac aaaccgccct tggtttaagg      7200
     aaactttttt agaataacaa attaacagtg tacagtattt atactggtag cattcttaga      7260
     ataacaaatt acaaaatgtt ttgacgtagg acttgacata ctggcaaacc ttggaagctg      7320
     tggttcggcg agaccccttt ggttgggctc gagtagtgat cccttctggg tcacttctac      7380
     ctttttagtg ttgcccctct ggcacacccc ttttcgaggc accgttctgg tgttctctaa      7440
     tccgacaaag tgttgaacta gcgtcagtta aaaaacactc taataaagac aaaaaaaaaa      7500
     aaaa                                                                   7504
//
ID   I_Ele25     repbase;    DNA;    INV; 7013 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele25.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7013
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7013
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 29 sequences with >91% identity, and ~98% identical to the
CC   original sequence in [1]. Closely related to MosquI_Aa2.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..1895
FT                 /product="I_Ele25_1p"
FT                 /translation="MAASSSGPPPTAWWDGPENDFGGNRVDGTHSGPTLPS
FT                 FMDPEGFHGELHLMRMSGANGPLPNRPFVIRRSVEKFIGGKIEGAFPEGRT
FT                 SSYALKVRSQKQYCKLLTMSQLIDGTAICITEHPTLNSVRCVVSCRNVIER
FT                 SEDELLEELKEQGIKEVRRITRRNGQSRENTPALVLTCRGTIRPDIVDFGY
FT                 IRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKXATCGXCSGDHPIAENRECS
FT                 HESFCKSCNAKGHKISSRDCPXWQFENAVQRIKVDQGLSYPSARRIVEQNR
FT                 SGRSFASVTGPATTXIXQQTNVXSEEQATILAAKDAEIAELRAALAARSAP
FT                 PAXANQEIEQLKAXVAEQAKQIEALTVQISVFLKAVMPAANLSCPSEPTAT
FT                 SIPSATSTVVLPVSSKINTTTSMLSTTSDGSINTPSKNHHTNDRITGTETD
FT                 SGHTGQNVLSDSDTASSDRSVNVEFYSPNPMKTMVSPKTPKPTRTRTSLPS
FT                 GSEITSDQVTPSVKRPISAVSRTESLFQLQKKTKKKASEGLGTIPKKR"
FT   CDS           2018..6619
FT                 /product="I_Ele25_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASDRRSAGELEVLPQPASPDRLRHHAQRISPLTSLD
FT                 SRGANVPDALPQPESLGRPRRLEGEMDEELLFLSVRCPAKTPGSQSPVGAV
FT                 VSHSGTGGQPLALGEDLEEGNQASEPISLDDVGGEGFEVIGTRRALPATPM
FT                 DNVGSQALFLQTNAKSTKTSNFEALLPSSIPAGSFAMQPGHPGHPNPGGKS
FT                 HSVNSFSGTLSSPNSMVPGVSVRHHMQRYPNPVETSLSPNAPSIPSSGFSE
FT                 TSLSDNRSQRIDSPSGLHGHFNPCDKSPSVISGLTTRPSETASLATNVAAA
FT                 AHSQHINLGDRSFLRQTSQNSSGTSSISRTSFPTPTLPKPITFLLQWNMIG
FT                 FYNNLANLELLVHDTAPWCLALQEVNRVSVEQLNRSLRGQYRWTMLRGSNL
FT                 RHSVALGVLTSIPFEVLRLDSDLPVVGIRLNGPIRISVLNVYLPCGTLPNL
FT                 RERIDRILEVIPGPTLFVGDMNAHHPIWGGHRSDARGIALQNIFEEHDLIV
FT                 LNNGANTFFNGHTSSAIDVAAVSRSFVNRFQWSVDSDMYGSDHHPIRIGSC
FT                 ASPPALARRPRWMYEKADWNEYTQSFRYLSRNHAPTNLTDLAKVIHNAAES
FT                 SIPRTSNRPGRKALHWWTDDTRKAVKSRRKALRTVKRIPIGHPNKENALNL
FT                 YRRRHMECKRIIADAKRASWENFLDSINPTQTSFDLWSKINALSGKRKATP
FT                 LTLQIQGSDVSDPPAVAMALGEYFAKLAAIDSYSDFFKRRIQPTLSSVADF
FT                 SVPDDHDNAPINNPFTLSELIFAIKCSTGKSAGPDGIGYPLIKNLPPSGKL
FT                 QLLDLINKTWLTDSFPSEWSESLIIPIPKTNSDSRGPSKFRPVALTCCMSK
FT                 VMERMVNRRLKQFLESHDLLDHRQHAFRAGHGTSTYFSQLGDVLHTAYSSG
FT                 LHTEIVSLDLSKAFNRTWGPLVLRQLVQWNLSGHIMRFVQNFLQQRSFRVL
FT                 VGDFLSDSYREETGVPQGSVIAVTLFLVAMNGVFSYLPSGIYVFVYADDIL
FT                 LVVSGKTPVRVRIKTQAAVNAVYKWASAVGFELSASKSVRCHVCPSNHRNP
FT                 VPIMVNGAVIPNKKTVKVLGVTVDHGLTFRHHFDSVKQSCQTRLNIIRTIS
FT                 RPHRTNNRAVRFRVAQAIIDSRLTYGLELTCIALDRLVSTLAPVYHGYIRI
FT                 ISGLLPSTPADSSCVEAGLLPFRFFIYTAVCRKAAAITEKTSGDDRIFILS
FT                 EGCRILQSAANVDLPPVAKVHWYGDICWHSSKPNIDNAIANQFRAGDNSSF
FT                 LRATVLDWLHNKYPSHEKRYTDGSLSNLGVGLGVSASDISLSLSLPPTCSV
FT                 FSAEAAAIFIAATIPSDRPVLILTDSASVVSALQSERPTHPWIQGTLENAL
FT                 PNTTYAWIPGHCGIPGNVAADNLAGTGHSSPRFEETVPFDDVKRWISKTFK
FT                 NVWGTEWAQSYSPHLRKIKLSTENWIDCPLLHDQRVISRLRTGHTRVSHNM
FT                 DGRGPFRRMCSICGVQNSVEHFICTCPQYESARRSFGISGSIRSALGNDAA
FT                 TVSTLIGFLKAIXLYGQI"
XX
SQ   Sequence 7013 BP; 1780 A; 1952 C; 1602 G; 1645 T; 34 other;
     tagcaaggga macggwttcc cccccaastm ttggggtgct ggggccgaaa tagacccttg        60
     agmaggtttc gkaaaaccwg tggawccttt aattagtgcg cgawtcwtma ttatccccac       120
     gtattgggaa aaggctkccw gtagtgcgcg agtgcaakcc gttmaaccgc cgcttcctgt       180
     ttggtgtttc tgggcgctac ctgcatcaag gccgtgattc aggtgagttg gtggtggtgg       240
     tgtctttaga gtaaggggcc gccatggcgg ctagttcgtc cggacctccc ccaaccgctt       300
     ggtgggacgg tcccgaaaac gatttcggag gaaatagggt tgatggcacg cattctggtc       360
     ctacgcttcc atcgtttatg gacccggaag gcttccatgg agaattacac ctaatgagga       420
     tgtcgggggc aaatggacca ctccccaatc gaccattcgt aatccgaagg tcggtggaaa       480
     aatttattgg tggaaaaatt gaaggggctt ttcctgaagg gaggacctct tcttatgcgc       540
     ttaaagttag gagtcaaaaa caatactgta agttgttgac aatgagccag cttattgacg       600
     gtactgcaat ttgcattacc gagcacccta ccctcaactc tgtccgttgt gtggtaagct       660
     gccggaacgt tatcgaacgg tcggaggatg aactgttaga ggaactcaag gaacagggta       720
     tcaaagaggt tcgcaggatc acgcgacgaa atgggcaatc gagggaaaat actccggcat       780
     tggtcctcac ctgccgtggg actatccggc ctgatattgt tgactttggc tatattcgct       840
     gcaggactcg accttactat ccgagtccaa tgcagtgttt caactgttgg cttttcggtc       900
     acaccaaatt gaggtgccag gccaagaasg ctacctgtgg gamctgttca ggggatcacc       960
     cgatcgccga gaacagggag tgtagccacg aaagcttttg caagtcmtgc aacgccaagg      1020
     gtcacaaaat ttcgagcmga gactgcccwc watggcagtt cgaaaacgcg gtmcaaagga      1080
     tcaaggtcga ccagggcctt tcctaccctt ccgcccgcag aatagtggag cagaaccgaa      1140
     gcggwagatc tttcgcctcg gtgactggtc ccgccaccac tgstatcgwt cagcaaacta      1200
     acgtgakatc wgaagagcag gcaacgatcc tggcggcgaa agacgccgag attgctgaac      1260
     ttcgagcggc acttgccgcc cgttcagccc ctccggcckc cgccaaccaa gaaattgaac      1320
     agctaaaagc cwtagttgca gagcaggcwa agcaaattga ggcactcacm gtgcaaatct      1380
     cagtcttcct caaggctgtg atgccagccg ctaacttgtc atgtccatca gaacccactg      1440
     cgaccagcat cccgtcagct acttccacag tcgtattacc cgtttctagc aaaataaaca      1500
     ccactacctc gatgctatcg accacctcgg acggttcgat caacactcca tcaaaaaatc      1560
     accatacaaa cgatagaatc acgggcactg aaactgactc tggccatacc ggccaaaatg      1620
     tactctcaga ttccgacaca gcctcctctg accgcagcgt taatgttgaa ttttattcac      1680
     ccaatccgat gaaaaccatg gtttcaccga aaacaccaaa accgacacgc accagaacct      1740
     ctctcccgag tggaagtgag ataaccagcg accaagtcac accttcagtg aaacgtccaa      1800
     tcagtgccgt ctcccgaacg gaatcgttgt tccaactaca gaaaaagacg aaaaagaagg      1860
     cctccgaagg tcttgggacc attcccaaga agcggtaagt ccatcaacct ttttctctat      1920
     tttctcaccg ccaccccaac cccccaaacc tgacaccccc gaaagagcct tccttaatgg      1980
     taccgtaaat agcagcatac agcccaacac cgatttcatg gcttctgatc gtcggagcgc      2040
     cggcgaactg gaagtcttgc cccaaccagc atcgccggac cgactccggc atcatgccca      2100
     acgtatcagt cctctcacct ctcttgacag tcggggcgcc aacgtaccgg acgctctacc      2160
     ccaaccggaa tcgttgggtc gaccccggcg tcttgaagga gaaatggacg aagagctcct      2220
     gtttctttct gttcgttgcc cagctaaaac tcccggcagc cagagccccg tcggtgcggt      2280
     cgtttcccac tccggaactg gcggacaacc tctggcgttg ggagaagacc tggaagaggg      2340
     aaatcaagcc tctgagccwa tttccctgga cgacgtggga ggtgaaggtt ttgaagtaat      2400
     cgggacgcgt cgggctctac ccgctacccc aatggacaac gtgggaagtc aagccctctt      2460
     tcttcaaacg aatgccaaat caaccaagac cagcaatttt gaagccttat taccctccag      2520
     tatccctgcc ggctctttcg cgatgcagcc tgggcacccc gggcacccca acccgggtgg      2580
     taagtcccac tccgtcaata gcttttccgg tactctcagc tcgcccaact ccatggtacc      2640
     tggagtctct gttagacatc acatgcaacg ctacccaaat cccgtcgaaa cttcactgtc      2700
     accgaatgct ccttcaatac catcgtcagg gttttccgaa acatccctct cggacaaccg      2760
     gtcccagcgg atagactccc cctctgggct ccacgggcac ttcaacccgt gtgacaagtc      2820
     cccctccgtc attagcggtt tgacaaccag gccttccgaa actgccagct tggccaccaa      2880
     tgttgcagcg gcagctcatt ctcagcacat caacctgggc gacagatcct ttctacggca      2940
     aacgtctcag aactccagcg gaacctcatc gatttcccga acttcttttc ccacgccaac      3000
     tctgccaaaa ccaattacct ttctccttca atggaacatg attggtttct ataataacct      3060
     cgcaaacctc gaacttctag ttcatgacac tgcaccgtgg tgcttagctc tgcaggaagt      3120
     gaacagggta tcggttgagc agctcaaccg ctcgcttcgt ggccaatatc gttggactat      3180
     gctccgtggc agtaacttga gacactcagt cgccctgggt gtattaacgt cgatcccttt      3240
     tgaggtcctc aggctcgact cagacctacc cgttgtcgga atacgcctta acgggcctat      3300
     caggatttcc gttttaaacg tctatctccc ctgcggaacc ttacccaacc tgcgtgagcg      3360
     gattgatcga atccttgagg tgatacccgg acctaccctt ttcgttggcg acatgaacgc      3420
     tcatcaccct atttggggcg ggcaccgctc tgatgccaga ggaatcgccc tacaaaatat      3480
     tttcgaggaa catgacctta ttgtccttaa caacggtgca aataccttct ttaacgggca      3540
     tacctcctca gccatcgacg tagctgcagt aagtcgctcc ttcgttaacc gttttcagtg      3600
     gagtgtggac tccgatatgt acggcagcga tcaccatcct attcgaatag gctcatgtgc      3660
     ctctccgccg gctttggccc gtcggcctag atggatgtac gagaaggcag actggaacga      3720
     atacactcaa agctttcgct atctttcccg aaatcatgca cccaccaatt taaccgattt      3780
     ggccaaagtg atccacaatg ccgcggaatc atccatacct cgtactagca atcgaccggg      3840
     caggaaggct ctacactggt ggacggatga caccagaaaa gcagtcaaat ctaggaggaa      3900
     agcactacgc acggtcaagc gtattcccat tggccaccct aacaaggaga atgcactgaa      3960
     cctatatcgg cggcgacata tggaatgcaa aaggataatc gcggacgcca agcgtgccag      4020
     ctgggaaaat ttcttggaca gcatcaatcc aacacaaact tcctttgacc tctggagcaa      4080
     gataaatgct ctcagtggaa agcgtaaagc aacaccactt acacttcaaa ttcaaggctc      4140
     tgatgtttcg gatcctccag cagtagcaat ggctctaggc gaatatttcg caaagctagc      4200
     agccatcgat agctacagcg atttctttaa acgccgtatt caaccaactc tcagttctgt      4260
     ggctgatttt tccgttcctg atgatcatga taacgcgcca atcaacaatc cattcactct      4320
     cagtgagcta atattcgcaa tcaaatgtag taccggtaaa tctgctggcc cagatggcat      4380
     cggttatcct ctcataaaaa atcttcctcc ttccggcaaa ctacaactcc tggatctcat      4440
     caacaaaaca tggctcacgg acagttttcc gtcagaatgg agcgaaagcc ttatcatccc      4500
     cataccgaag actaacagtg actctcgtgg cccatccaaa ttccggccag ttgcactcac      4560
     gtgctgtatg tcaaaggtga tggagcggat ggtgaaccgt cgactgaaac agttcctgga      4620
     atctcatgac ctcttggacc atagacaaca tgcctttaga gcagggcacg ggacttcaac      4680
     ctatttttcc caactcggtg atgtcctaca tacggcttac tccagtggct tgcataccga      4740
     gatcgtttcc ctagatctat cgaaggcgtt caaccggaca tggggtccat tagttctccg      4800
     tcaactagtt caatggaatc tatcggggca catcatgcgt ttcgtgcaga attttttaca      4860
     acagcgttcc ttccgagtcc ttgttggtga cttcctatcc gactcatatc gggaagagac      4920
     cggcgttcca cagggctccg tgatagcagt caccttattt ctggtggcaa tgaacggagt      4980
     gtttagctac cttcccagtg gcatatatgt atttgtatac gctgacgata tccttcttgt      5040
     cgttagcggt aaaacaccag ttcgtgtcag aattaaaacc caagcagctg tcaacgcggt      5100
     atataagtgg gcctctgcag tcggcttcga gctgtccgca tcgaaaagcg ttagatgtca      5160
     tgtgtgtcca tctaatcatc gtaaccccgt cccaattatg gtcaatgggg cagttattcc      5220
     taacaaaaaa accgtcaagg tgcttggagt cactgttgac catgggctca ccttccggca      5280
     tcactttgac tcggtgaagc agagttgtca aacccgccta aatataatcc ggacgatctc      5340
     acgcccccac cgaacgaaca atcgggcagt gcgcttccgg gttgcgcaag ccataatcga      5400
     tagcaggcta acatacgggt tagaactcac ttgtatagcg ttagaccgac tcgttagcac      5460
     tctcgctccc gtataccacg ggtatatacg cataatatca gggttgctcc cttcaactcc      5520
     ggcggactca agctgcgtcg aagcaggtct tctccccttc cgttttttca tttacacggc      5580
     tgtctgcaga aaagctgccg ctattaccga aaaaacatcc ggagacgaca ggatttttat      5640
     cctatctgaa gggtgcagaa tcctccagtc ggccgccaac gtggacctcc ccccagtggc      5700
     caaggttcac tggtacggag atatttgttg gcactcatcg aaaccaaaca tagacaacgc      5760
     aattgcaaat cagtttcgcg caggtgacaa ttcatcgttt cttagagcta ccgtcctcga      5820
     ttggctacat aacaagtatc ccagtcacga aaaacgctac accgatgggt cactctcgaa      5880
     ccttggcgtc ggtttgggag tttcggcctc cgacatttca ctaagcctta gtcttcctcc      5940
     tacatgctcc gttttttccg cggaagccgc tgctattttc atagcagcca ccataccatc      6000
     cgaccgacca gtattaatcc ttacagattc agcaagcgtg gtttctgcct tgcaatctga      6060
     aaggcccaca catccatgga ttcaggggac gctggagaat gctctgccga acacaaccta      6120
     cgcatggatt cccggacatt gtgggatacc cggaaatgta gctgccgata acctcgccgg      6180
     gactggccat tcttctcctc gtttcgaaga aacggttcct ttcgatgacg tcaaaagatg      6240
     gatttcgaaa accttcaaga acgtatgggg tactgaatgg gctcagtctt actctccgca      6300
     cctgcgaaaa atcaaactct caaccgaaaa ctggatcgat tgtcctcttc tccacgatca      6360
     acgagtcatc tcccgtttaa gaaccgggca tacgcgggtt tctcataaca tggatggacg      6420
     tggtcctttc agacggatgt gctcwatctg cggcgttcag aactccgtcg agcactttat      6480
     atgtacatgt ccgcaatacg aatcagcccg gagatccttc ggaatttcgg gaagtatccg      6540
     cagcgcccta ggaaacgatg cggccaccgt gtcaacttta atagggttcc taaaagctat      6600
     caamctgtac ggacaaatat gacccaacac tacaagccag cttcagtccg gctaagcagc      6660
     ggcgatgtgc ccggggggcc accgacaaag tcggcggcta tacgcaatta ggttatcaaa      6720
     tttttcaaaa taaggaagtt tcgcattatg cggtgcgcat ttacaattag gatatttcaa      6780
     atcaagactg tctgtgggtg ttacatgtaa aacaacgaca ggtcgactgt ccagtgagtc      6840
     agctaaaata gcgttactct gtgtttggcg agaccccttg gttgggctcg aaagaggcac      6900
     cccttaaggg tcctcttctt tttttgaggc accatttcgg tgacctcttc tgacgagtgt      6960
     tgaactagct ttaagttaaa aaacactaaa ataaagaaaa aaaaaaaaaa aaa             7013
//
ID   I_Ele28     repbase;    DNA;    INV; 7104 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele28.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-7104
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7104
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 7
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           688..2436
FT                 /product="I_Ele28_1p"
FT                 /translation="MSASSPPLNPGDPGGPGGGYQRNRKNGEYTDRLIPEF
FT                 LDREGNAGQLQFLRMKAKTGAIPNNPFLLRLSVEKHVGGQIAGAFKENKGI
FT                 SYVLKVRSQAQFDKLLTMSRLADGTEISVEEHSNLNQVKCVVSNADTIGLE
FT                 EGYIAEQLREQKVKEVRRIKRRNRNTNALEETPTLILTISGTVVPDHIDFG
FT                 WSRCRTRNFYPNPMQCFRCWSFGHTGKRCTAPARVCGRCSKVHQEDQEMET
FT                 ANEQGTTNEPTPRRVCTEPTYCKACNSAQHALSSRECPAFRKENAIQIIRV
FT                 DDGLSYPQARREFEAREAQKERDQGRNSYAGVASSSKDAEIAELRGTVKRL
FT                 ENEAAKREQRMADMEQALAYRPISERLETAKDHGPIEELIRQVAELTATVR
FT                 QLQADLKEKDQIIAEMKEKQQVTPRNSMTTPTPIPQSSSPYTTVSSVECLP
FT                 NFADPTMTAQVAEWVRNNVAAKKEKMANEKKRVVPKKQRKKSNDKQTALLQ
FT                 DDQSPHMSHSPLSRIGKESEFLATNMELDDSDNSLKSVGTATSSAAGSKRI
FT                 HSISSAESSINSADEVRITRNKTRLPRDTAADISMQ"
FT   CDS           2491..6957
FT                 /product="I_Ele28_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="SHYPITFTSTFPPADVQNPELNERQQSSSNDSTNHTQ
FT                 TTSSTAEETSGSRGPPSADTTPQPELGDNPRHPNVLAAEDPEDGRERLGPA
FT                 GADVTPQPEPADNPSLPLRSGRGTDKGGNAYPPEDVEGSKPAMNLRRNPPR
FT                 RRNPPNRYGFSDINNPKPTATEYLSPKLKPLSVLESTNASAYDAMVAIRDE
FT                 ACAPPTAGPSGVFRRPSPLYPYQDLSGHLGGKTPSGKPHPLRRPHRKGTPP
FT                 TAGPSGLAHHFVIPDPSQDQLGHLGPQNPSATTVRKSTTLSIQWNMNGFLQ
FT                 NRNDLELLVQEYQPIILALQEIHRVSETTMDSTIGRKYKWHKTAGTSLYHS
FT                 VAIGVLADIPAVRLNITTDLPIVGVRLDLPIAVSALSVYLPNGKLPNLRER
FT                 LQDALDQIPGPIIMLGDINGHHQSWGDKKTDARGCCVMDLACGNDLVVLND
FT                 GSPTFFRGTTETAIDVTLASSEIGHKLLWHVKEDPHSSDHSPIIVTLTNST
FT                 QPETTRRPRWLFEQADWAGFQELVEKELDQYASPSIEDITASIIKAASETI
FT                 PRTSPNPGRRALHWWNDTTKAAVKHRRKKLRTFKKIKNKLPPDHPNTVQAK
FT                 EEYQEARNACRQTIREEKEKSWTKFLDSINDQQSSAELWRRVNCLRGKRRV
FT                 KGMCLTVDNVPTRDPQIIAEALGEYFQELSSMGKYPEAFRRKHHCSHSAIS
FT                 NFEIAPDCGQPFNTPFQMAELEFALRRAKGKSAGPDELAYPLLKNLPPSGK
FT                 QGLLRAINSIWTSGTLPADWRHSLVVPIPKGSGPANSTSSYRPIALTSCAS
FT                 KVMERMANRRLVEYLESNGLLDDRQHAFRSGRGTGTFLAALGQILDDALSK
FT                 GDHAELVSLDLAKAYNRAWTPGILEKLARWGITGNLLRYLKGFLTERTFQV
FT                 TVGNSRSNIQSEETGVPQGSVIAVTLFLVAMSGVFEVLPGGVFLVVYADDI
FT                 TLVVTGAHPKAIRRKAQAAATAVGKWASTTGFEISAAKSTRIHICGINHRP
FT                 PRKPIKLNGETIPLKRSLRIMGITLDRHLTLKNHLIGVKHSCKDRLNLLRS
FT                 ISAKRTCSDRATCVRVADAIIGSRLLYGIEMTCRNQDLLTETLAPIHNKAI
FT                 RTVSGLLPSTPADAACAEIGVLPFRHKVALTIANRAIGYLEKTRGNGQACL
FT                 LSEKANLALSTAANTTLPPVAGLHRLGPRSWSARAPEVDNSVKNRFKRQSQ
FT                 PEKVRAYFCERLAKRYTNWEIRYTDGSRSAGRVGVGVHGNRHEEQHSLPTE
FT                 CSVFSAEAAAIFQALTAPSDGSLLIVTDSHSSITAVENPRNKHPFIQGIQM
FT                 LLDTAPYPRALMWVPGHCGIAGNERADVLAGIGRNSAPLTKKIPADDLRNW
FT                 VKDVFWRTWTDEWRSNRELFLRKSKPNTIPGEDLSSRREQIVLSRLRTGHT
FT                 RVSHDMAARGAGFRRQCELCNTQNTVEHFLCACPQYRDLRETHEITDIPRS
FT                 LANDPVNERQVINFLKEAGLFGEI"
XX
SQ   Sequence 7104 BP; 1972 A; 2055 C; 1782 G; 1295 T; 0 other;
     cagttgacag ttcgggttcg tcgcgtttgg atcgcttttt tcagcgtcgc gagtgaaaag        60
     tggtgatttt cggagtgctt ttttcaatcg aatttctcga ctttccgaac tttccgcatt       120
     ttccggagca aatttcggag tgtccgcggc caatccgccg gtttccgtaa atttgttcgc       180
     cgtttttccg ccgaattttc ggtcgcaaaa gtgcccactc gtgtggagaa agccacaaag       240
     gcaagtgagc gtgggtatta cgccaagggg cgaagaaagt gccggatctt tttcggaaaa       300
     taagtggtgc taggctacgg ggcccaaaaa gcttaattaa ttagctctcg ttggtggttc       360
     cgaagaagaa agtgttggcc atttttaggg ccccataaga gcccctgagt gccaaataga       420
     ccagtgacaa ccaaacctcc taccccccac tttttgtgaa gtgttttcca cccccccccc       480
     ctcaaaattt tcccctcccc ctacgattgg tagtgccggt taaggccgtc gtagaaccct       540
     ccctcttaag ccaccgaggt gtacagaggc gagttttttg cataaaaacg tcagtgcggt       600
     ggacgttcca cgagtgaatc aagtggtttc ccgaaaaggc cggtcgactg tgtggtctaa       660
     ccaccatagt cccggcccgc cggcgtaatg tcggcgagca gccctccgct caaccccggg       720
     gacccagggg gccccggcgg aggctaccag cgtaatcgta agaatggtga gtacaccgat       780
     cgattgattc ccgagttcct cgacagggaa ggaaacgcag gtcagctgca gttccttcga       840
     atgaaggcga aaactggtgc catcccgaac aacccgttcc tcctacgcct ctcggtagaa       900
     aagcacgttg gtggacaaat cgcgggcgcg ttcaaagaga acaaaggtat ttcgtatgtt       960
     ctcaaagtgc gtagccaggc ccaattcgac aaacttctga ccatgtcaag gctagcggac      1020
     ggaaccgaga tcagcgtgga agagcattct aacctcaacc aggtcaaatg cgttgtttcc      1080
     aatgctgaca ccatcggcct agaagaggga tatatcgccg aacagcttcg cgagcaaaaa      1140
     gtaaaagaag tccgacgaat caaaaggagg aacagaaaca ccaacgctct ggaggaaacc      1200
     ccaaccctaa tcctcaccat cagcggcacc gtggtcccgg accatataga ttttggctgg      1260
     tccagatgtc gaacccgcaa tttctacccg aacccaatgc agtgcttccg ctgctggagc      1320
     ttcggacata ctggaaagcg ctgcacggcc cccgctagag tctgcggaag atgcagcaag      1380
     gttcaccagg aagatcagga aatggaaacc gcaaacgagc aaggaaccac gaacgaacca      1440
     acgcccagac gagtgtgcac cgagcccaca tactgcaaag catgcaacag cgcacaacat      1500
     gctttatcga gccgcgagtg cccggcattt aggaaggaga atgccatcca aatcatccgt      1560
     gtggatgatg gcctttccta ccctcaggcg cgacgggaat tcgaggcgag agaggcccaa      1620
     aaagaacgcg atcaaggtcg gaactcctac gccggagtag ctagcagcag caaagacgcg      1680
     gagatagctg agctccgagg caccgtgaaa aggttggaga acgaagctgc aaagcgcgaa      1740
     cagcgaatgg ccgatatgga acaagcccta gcataccgac ccatcagcga acggctggaa      1800
     acagccaagg accacggccc gatagaggag ctaatccggc aggtagcgga attaaccgcc      1860
     accgtgagac agctccaagc ggaccttaaa gagaaggacc aaatcatcgc agaaatgaag      1920
     gaaaaacagc aggtaacccc ccgaaactcg atgaccacac caacgccaat cccacaatca      1980
     agctccccat acactaccgt cagcagcgtc gaatgtctgc cgaattttgc ggacccgaca      2040
     atgactgccc aggtagccga atgggttcgg aacaacgtag ctgcaaaaaa ggaaaaaatg      2100
     gccaatgaga agaagagagt tgtccccaaa aagcagagga agaaaagcaa cgataaacaa      2160
     acggcactac tacaagacga ccagagcccc catatgagtc actcccccct gagccgcata      2220
     ggcaaagaaa gcgagttcct tgcaacaaac atggaactgg atgatagtga caattcgctg      2280
     aagtccgtcg gcactgcgac ttcgtcagca gctgggtcaa aacggatcca ctcaatctcc      2340
     agcgcggaat caagcatcaa ctcagccgat gaagttcgga tcaccaggaa caaaactagg      2400
     ctccctcgtg ataccgcagc agacatatca atgcagtaac cgccgaacag gtcgctcgaa      2460
     caaaacatca gcacatcacc agaacagtaa tcacactacc caatcacatt cacctccacc      2520
     ttcccacccg ctgatgtcca aaacccagag ctaaacgagc gacaacagtc aagctccaac      2580
     gacagtacca accacaccca aacaacatca agcactgcag aggagacctc gggcagccga      2640
     ggccccccca gtgcggacac tacaccccaa ccggaactgg gggacaaccc tcggcacccg      2700
     aatgtccttg ctgccgaaga cccagaggac ggtcgggaac ggttaggccc cgccggtgcg      2760
     gacgttacac cccaaccgga accagcggac aaccctagcc ttcccctccg gtctggaaga      2820
     gggacggaca agggcggtaa cgcctatccc cctgaggacg tcgagggatc caagcctgca      2880
     atgaacctgc gccgaaatcc tccccggaga agaaacccgc caaaccgtta tggcttcagc      2940
     gacatcaaca accccaaacc aactgctacc gaatacttat ctccgaagct aaaaccactg      3000
     tcggtcttgg aaagcaccaa cgcttcagct tacgacgcga tggtcgcaat acgtgacgaa      3060
     gcttgcgctc caccaacagc cggcccttcc ggagtatttc gacgaccttc accactttat      3120
     ccctaccagg atctgtctgg gcacctcgga ggtaaaactc cgagtggtaa gccccaccct      3180
     ctccggcgac ctcatcgaaa aggaacgcca cctactgccg gcccctccgg cctagcacac      3240
     cattttgtca tcccagatcc ctctcaggat caactagggc acctcggacc tcaaaatcca      3300
     agcgcaacga cagtaaggaa gtcgacaacg ctctccattc agtggaatat gaacggtttc      3360
     ctccaaaatc gtaatgacct ggaactgctg gtgcaggagt accagcctat catcctggct      3420
     ttacaggaaa tccaccgggt aagcgaaacc accatggaca gcaccatcgg tagaaaatac      3480
     aaatggcaca aaacggccgg tacttcgctc taccattccg tggcaatagg agtactagcc      3540
     gatatccctg ccgtcaggct aaacatcact acggatttac caatcgttgg cgtccggctg      3600
     gacctgccca ttgctgtgtc tgccctgtcg gtctacctac cgaacgggaa gcttccgaat      3660
     ttgagggagc gcttgcagga tgcccttgac caaatccctg gcccgatcat catgctcggt      3720
     gacattaacg gccatcacca gtcctggggt gacaaaaaga cagatgcacg aggatgttgc      3780
     gtaatggacc ttgcatgcgg taacgatctc gtcgtcctca acgatgggtc ccccactttt      3840
     tttcgcggga caactgaaac cgcaatcgat gttacacttg cctcctccga gattggccac      3900
     aagttgctgt ggcatgtgaa agaggatccc cacagcagcg atcattcgcc aatcattgtc      3960
     accctcacca actccaccca gccagaaacg acccggcgcc cccgatggct cttcgagcag      4020
     gcggattggg ccggcttcca agaacttgtg gaaaaggaac tcgaccagta cgcatccccg      4080
     tcaatagagg acatcactgc ctccatcatt aaggccgcaa gcgagacgat tccaagaact      4140
     agccccaatc caggaaggcg agccctccac tggtggaacg acaccactaa ggcggcggtg      4200
     aaacaccggc ggaagaagtt gcgaaccttt aaaaagatca agaacaaact accgcctgac      4260
     catccgaata cggtacaagc caaggaagaa taccaggagg caagaaacgc ttgtcggcag      4320
     accatccggg aggaaaagga aaagtcgtgg acgaagttcc ttgactccat caacgaccaa      4380
     cagtcctccg cggagttgtg gaggagggta aactgcctgc gaggaaagcg gagagttaaa      4440
     ggaatgtgtc tgacagtcga caacgttccc actcgagacc cgcagataat cgccgaagcc      4500
     ctaggcgaat attttcagga actctcgtct atgggaaagt atcctgaagc ttttcgcaga      4560
     aaacaccact gttcccactc cgccatcagt aattttgaaa ttgcccctga ctgcggtcaa      4620
     cctttcaaca cccctttcca aatggctgaa cttgagttcg ccctccgacg agctaaaggg      4680
     aagtccgctg gaccagacga gctggcatac cccctgttaa aaaacctccc tccaagcgga      4740
     aagcaaggcc tactccgggc catcaactcc atatggacgt cggggacatt accggccgac      4800
     tggaggcaca gtctggtggt tccaataccg aaaggctccg gaccagcaaa cagcacctcc      4860
     agctaccgcc caatcgctct gaccagttgc gcctccaagg tgatggaaag aatggcgaac      4920
     cgccgactgg tggaatatct cgagagtaac ggcctcctag acgacaggca gcacgctttc      4980
     cggtccggtc gtggcaccgg aaccttcctg gcggcattag gacagattct tgatgacgcc      5040
     ttatctaaag gagatcatgc ggaactagtt tcgctggacc tggcaaaagc ctataaccgg      5100
     gcctggaccc caggaatact agagaagcta gcccggtggg gaatcaccgg aaatctactc      5160
     cgttacctga aaggtttttt aaccgagagg acattccaag tcacggttgg aaacagccgc      5220
     tccaatatac aaagtgagga aacaggagtc ccccagggct ccgtgattgc ggtcactctt      5280
     ttcctggtag ccatgagcgg agtatttgaa gttctaccgg gaggagtctt cctcgtggta      5340
     tatgcggacg acatcaccct agtggtgacc ggtgcccacc cgaaagcgat caggcgaaaa      5400
     gcccaagcag ctgccacagc tgtaggcaaa tgggctagca cgacaggctt cgagatctcg      5460
     gctgccaaat ccaccagaat ccacatctgc gggatcaacc accggccacc taggaaaccg      5520
     atcaaactaa acggagagac cattccactg aaaaggtctt tgaggataat gggtatcacc      5580
     cttgaccgac acctaacctt aaaaaaccac ctcatcgggg tcaaacatag ctgcaaagac      5640
     aggttaaacc tgctccgtag catctcagca aaaagaactt gcagcgacag ggccacctgt      5700
     gtaagggtcg cggacgcgat catcggcagt cgtctactct acgggatcga gatgacttgc      5760
     cgaaaccagg atctgcttac cgaaacatta gcgcccatac ataacaaagc cattagaacc      5820
     gtatccggcc tgctcccatc cacccccgcc gacgcagcgt gcgccgaaat cggagttttg      5880
     ccattcaggc ataaagtagc cctcacaatc gctaacaggg caataggata cctggagaaa      5940
     acccggggaa acgggcaagc atgcctcctc tcagagaagg caaacctggc cctcagtact      6000
     gcggccaaca ccacgcttcc cccggtggca ggcctccacc ggctcgggcc cagaagctgg      6060
     tcggccagag cacccgaggt agacaacagc gttaagaacc ggttcaaaag gcagtcccaa      6120
     ccggaaaagg tccgggcgta cttctgtgag aggctagcaa agcgatatac caactgggag      6180
     atccggtaca ccgacgggtc aaggtcggcg ggacgtgtgg gcgtaggagt ccatggcaac      6240
     agacacgagg aacaacacag cctcccgacg gaatgttccg tcttttcagc ggaggctgcc      6300
     gcgatcttcc aggcactgac agccccaagc gacgggtcac tactaatcgt gacagactcc      6360
     cacagttcca tcacagcagt agagaaccca aggaataaac atccatttat ccagggcatc      6420
     cagatgttgc tggacaccgc cccatacccg agggcattaa tgtgggttcc cgggcattgt      6480
     gggatcgccg gtaacgagcg agcagatgtc ttggctggca tcgggagaaa tagcgcccca      6540
     ctaacgaaaa aaatccccgc tgacgactta aggaactggg tcaaggacgt cttctggcgg      6600
     acctggacag atgaatggag gagtaatcgg gaattgttct tgagaaagtc caaaccaaac      6660
     accatacccg gcgaagacct atcgagccga cgtgaacaga tcgtcctttc ccggttgcgt      6720
     acgggtcaca cccgggtatc ccacgacatg gcggcaaggg gagccggatt ccgccgtcaa      6780
     tgcgagcttt gcaacacgca gaacaccgtg gaacactttt tatgcgcatg ccctcaatat      6840
     cgggacctac gagaaacaca cgagatcacg gacatcccca ggtcgttggc gaacgaccct      6900
     gtaaatgaac gccaggtcat caattttctg aaggaggctg gccttttcgg cgaaatatag      6960
     tagtagagag gaaactctgt attttgaaat gtaattattc ctagggctta acccttctgg      7020
     tatagccaat ttctttttta aacggagatg aaccagccaa gggctgaaaa tctccctaat      7080
     aaagataaat aataataata ataa                                             7104
//
ID   I_Ele33     repbase;    DNA;    INV; 6248 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele33.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6248
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6248
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 7 sequences with >99% identity, and ~100% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1674
FT                 /product="I_Ele33_1p"
FT                 /translation="MEGHSRPPPCDPPDLARCPAWMIGDDELLHTIVLQMK
FT                 VRPNDNEGANEVRLPTDPFVVGNAVLLALGTANARKVSASKEARGARYILR
FT                 TKSKIFSEKLQKITELPDGTPVEITPHPTLNFVQGIVYDLDTVNHTEENIL
FT                 TNLQSQGVCKVRRIKKRDGETYRNTPLLVLSFQGSVVPQHVYFGLLRIAVR
FT                 TYYPSPLLCFRCANYGHTKKTCDNAKFPQICLNCSESHTDVVECPNPPYCK
FT                 NCQGSHKPISRVCPIYREEDAIIHTKVDRNLSYAEARADWRAANKSRSYAN
FT                 TVQDRLRQDDSQKDKIIKMLQEEVESLRNVILELKTQIANLSNNNQPNVST
FT                 STQAQVRKDNSSTGKAPTVALTRLCAMEQYIKAHSVEKPQRSSSPNSNQSI
FT                 DLNESMEFETTTHKKRKGNKNKSEPDSPERKKGVASSTKRK"
FT   CDS           1677..6182
FT                 /product="I_Ele33_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTQEPSFRKQNFAIEPDTIFGLSEHSMINNSTNNTNL
FT                 HSTTASTFNNVIYATNTDTQTEQFSKTTIMEHKASSRFIAPSRSNSDSPSA
FT                 RLPTSALTRDVPDESDEPLAAADVDCLLTQASTNTVFFTDENFRCLQPIPG
FT                 LSHDECNSQAPSPNSCYRTTAVRIASDSPSARLSTSALTRDVPDISDEPLA
FT                 AADVACLYPQASKIFHSHHEIVPPRMRFFPDPTQLDALASLPREALVNAEL
FT                 YDHFRQVFVLPSTSSCNNRSGVAISPSNDSRNTANAENPTSQRDQETVQST
FT                 HDNFLGIVVPHASQKQLMLQWNIRGLWANHAELSNYVIQKKPIVVNLQEMK
FT                 TSNTEIALKGKYDWKLADHNIRNGKGIVGLGVLKEVPHCFYDLHSTIPICA
FT                 VRLHSPYNVTIVAFYFPNNANVKDIIDGLNLVLETTDPPYVIGGDANAAHE
FT                 AWGSSKTSVRGRSLLSWIVDNDFIVLNNGAPTFLSDTHCSFSSIDITFASK
FT                 CLAPRYLWEVLEDTMGSDHFPIITYLDATTAKEGCRKRWLYKDANWKHFEQ
FT                 CIDQLLQQNCDLDIVQLGNLIREAAEMSIPKSSGKLNGKSEIWWTKEVDTA
FT                 VKLRRKALRAMKRLNADDPLKEVLKKKFQIARANARKVILRAKQASWEQFC
FT                 ETFTPSTSSSQIWTNFNRLCGKKKAVAKTMIINKTHVTDPNEIVEHFAEVF
FT                 ELNSKANYNISNEHAEAGTNEQSFCTVEPSVLDNNFTMQELLRAIDSAKGY
FT                 SAGIDEVGYPMIRHLPLHGKMRMLMAYNTLWNEGRFPEKWKEGIVIPIPKP
FT                 GQPQQHAESYRPITLLSCIGKIYERLINHRLMVHLESNDLLNQNQHAFRTG
FT                 KGTTTYFADLNEIMTDALKRKLHCEFALLDLRKAYDTTWRPHIIQRVRELN
FT                 LGINMTKSIESFLKDRKFRVSFGGALSSSKTQEDGVPQGSVLSVTLFIIAM
FT                 DTVFNVIPSGVTALIYADDILLVTVGKKVSSTRKRLSLAVKAVCEWAKWTH
FT                 FEISPNKSSLLHVCREKHRNWKKNRKEIKINGESIPDVKTARILGVWIDSR
FT                 VTFKKHFKNTLNAIQSRINFLKAIASRANREVIWKIANATCISKLLYGIEL
FT                 FGLRCIEPYQSSFNQLIRLASSAFRTSPSLALAIESGELPFKERVALAYIR
FT                 SYCKIEEKSHQYRTAFRENIEQLSTTFFGEAFPQISKLHRFGQRPWYYARP
FT                 KIDWTIKRNFKVGEGAHKARAFVNGLLNSEYKQYTRIYTDGSKDEVGVGCG
FT                 VIGVDFIIEGQLPSSSSVFSAEAAALAIAVYHADNTPTVILTDSASCLSAL
FT                 EKGNILHPYIQAIETFSENKHVVFLWIPGHCDISGNVKADQAAKRGRTGLA
FT                 LEFEVPAKDLILWAKHKMKDIVQSRWIGNTTDQLALVKRSIGKWNDKMKKS
FT                 DQRVLTRCRIGHTRLTKCHLFSKNDPDICDLCNSSLDVKHILLECRKFDDI
FT                 RRRLGISSNISIALSNDQKEENKIIKYLKNTGLYNQL"
XX
SQ   Sequence 6248 BP; 1974 A; 1315 C; 1331 G; 1628 T; 0 other;
     cagtgaatta ttacaactcg aaccatacgg tcgtgtatgc tatttcactt agcaaaatat        60
     taccgataat tcgcgtgtaa acggtcggaa ttattcgcgg ttttcagcaa attgtgctta       120
     ttagtaatat tccatcacat tcgaagtgct aaccatcgat tttgagactt tttggtgtag       180
     ttttgcgata aattgctagt gtttttgttt actgaaaagg tggcgtgctt gactagcaca       240
     gatcccgttg gatttgtggg ctctcgtcgt tgagttattt tcagtggatt gtaggtactg       300
     tctgggacca tccaaaagaa gcgagcgatt gtagtgttgt agtgagttgt tgtatggaag       360
     gaaggcctga tggaaggcca ctctagacca ccaccgtgtg atccaccgga cctcgctcga       420
     tgcccggcat ggatgattgg ggatgatgag ttactgcata caattgtact gcaaatgaaa       480
     gtgagaccca acgataatga aggcgctaat gaggttcgac tccctaccga cccgtttgtt       540
     gttggcaatg cagtgctttt ggcactagga acagcaaatg ctcgaaaagt gtcagcatcg       600
     aaagaggctc gaggtgcaag atacattttg cgtaccaaat ccaaaatctt cagtgaaaaa       660
     cttcagaaga taactgagtt acctgacggt accccagttg agatcactcc tcatccaacg       720
     cttaattttg tgcagggaat tgtgtatgac ctagacacag tcaaccacac cgaggaaaat       780
     atcctgacaa atctacagtc gcagggcgtc tgtaaggttc ggcgtattaa gaaacgtgat       840
     ggtgaaacct accgaaacac gccacttttg gttctatcgt ttcaaggatc tgtggtgcca       900
     cagcatgttt attttggact gctgcggata gccgtgagaa cgtactatcc gtcgccatta       960
     ctctgttttc gttgcgccaa ctacggacat acaaaaaaga catgcgacaa cgccaagttc      1020
     cctcaaatct gtttaaactg ttccgagtct catacagatg ttgttgaatg ccctaacccc      1080
     ccttattgta aaaattgtca agggagtcac aaaccaattt cgcgggtttg tccgatttat      1140
     cgggaagagg atgcaatcat tcatactaaa gtggatcgca atctgtcgta tgcggaggct      1200
     cgagctgatt ggcgtgcagc caacaaatct cgttcttatg ccaatacagt tcaagatcga      1260
     ttgcgtcaag acgactctca gaaggataaa attattaaaa tgctgcagga agaggtagaa      1320
     tctctgcgta acgtaatcct tgagctcaaa acacaaatag ccaacctcag caacaacaac      1380
     caacccaacg tttcaacaag cactcaagca caagtccgca aagacaactc gtcgactggt      1440
     aaggctccta ctgtagctct gacacgattg tgtgccatgg aacaatatat aaaagcacac      1500
     agcgttgaaa aaccacaacg atcatccagt cctaactcga accaaagtat agatctgaac      1560
     gaaagtatgg aatttgaaac gactacgcat aaaaaacgga aagggaacaa aaataaatct      1620
     gaaccggact ctccagaacg taaaaaaggg gtcgcatcca gtaccaaaag aaaataatga      1680
     cccaagaacc atcattcaga aagcaaaact tcgctattga gccggacacg atttttggac      1740
     tttcggaaca ctctatgata aataactcaa ccaacaatac aaatttacac tcaactactg      1800
     catcgacgtt taataatgta atttatgcaa cgaatactga cacgcaaacc gaacaatttt      1860
     cgaaaactac aattatggaa cacaaggctt cttcaagatt cattgctcca tcaaggagca      1920
     attctgattc gccaagcgcg aggcttccca cgtcagccct gaccagagat gttccggacg      1980
     agtccgatga gcctctggcg gcagctgacg tggattgcct actcacacag gcaagtacaa      2040
     acacggtgtt ttttacggac gagaactttc ggtgtcttca acctattcca ggcctttctc      2100
     atgatgaatg caactcacaa gcaccttctc cgaactcctg ctaccgaacc actgcagtaa      2160
     ggatagcatc tgattcgcca agcgcgaggc tctccacgtc ggccctgacc agggatgttc      2220
     cagatatatc tgatgagccc ctggcggcag ccgacgtggc ttgcctctat ccacaggcaa      2280
     gtaaaatatt ccattctcac catgaaatag tccctcctcg tatgcggttt tttccagatc      2340
     cgacacagct tgacgcatta gcttctcttc ctcgagaggc gttggtcaat gccgagttat      2400
     acgatcattt ccgacaggta ttcgttcttc cttcaaccag cagttgtaat aatcgtagcg      2460
     gagtggcaat atcaccctcg aacgatagca gaaacaccgc caatgcagag aatcccacat      2520
     cgcaacgtga tcaggagacg gttcagtcaa ctcatgacaa tttcttggga attgttgtac      2580
     cgcacgcctc tcaaaagcaa ttaatgcttc aatggaatat aagaggtcta tgggccaatc      2640
     acgcagaatt gtccaattat gtcattcaga agaagccgat cgttgtgaat ctccaagaaa      2700
     tgaagacatc aaacactgaa atcgcactaa aaggcaagta tgactggaag ctggccgacc      2760
     acaatattcg caacggaaaa ggaattgtag gattgggtgt tctgaaggaa gtgcctcatt      2820
     gtttctacga tttgcactcc accatcccga tatgtgctgt tcggttacat agcccgtata      2880
     atgtgacaat tgttgcgttt tattttccaa acaatgcaaa cgttaaggat attattgatg      2940
     ggctgaatct ggtcctggaa accacggatc ctccgtatgt cataggcggt gacgcaaatg      3000
     ctgctcacga ggcttggggc agctccaaaa catcggtgag ggggcggtcg ttactgtctt      3060
     ggattgtgga taacgacttt atagtgctaa ataatggtgc tccaactttt ctaagtgata      3120
     cgcattgctc tttttcttct atcgacataa cttttgcttc caaatgtctc gctcccagat      3180
     atctttggga ggttttggag gacacaatgg gaagcgatca ttttcccatt ataacttatc      3240
     tcgacgcaac tactgcaaaa gaaggttgcc gtaaacgatg gctatacaaa gatgccaatt      3300
     ggaaacattt tgaacaatgc atagaccaac tccttcaaca aaattgtgat ttggacattg      3360
     tgcaattagg taatctcatt agggaagccg cagaaatgtc aattccaaaa tcttctggga      3420
     aactaaatgg gaaatccgaa atttggtgga ctaaggaagt cgatacagct gtcaagctac      3480
     gccggaaggc tctacgagcc atgaaacgtc tgaatgctga cgatccgtta aaagaagttt      3540
     tgaagaaaaa gtttcaaata gcaagagcca atgcccgaaa agttatccta agagctaaac      3600
     aagcttcttg ggaacaattt tgcgaaacat ttacgccttc aacaagttca tcacaaattt      3660
     ggacaaactt caacagactt tgtggaaaga aaaaagccgt tgctaaaact atgatcatca      3720
     ataaaacgca cgttaccgat ccaaatgaaa tcgtggagca ctttgcggaa gttttcgaat      3780
     taaattccaa agcaaactac aacatttcta acgaacatgc tgaggctgga acaaatgaac      3840
     aatctttctg taccgtagaa ccatctgttt tggataataa tttcacaatg caagaattgc      3900
     ttcgtgcaat cgattcagca aaagggtact cagcggggat cgacgaagtg ggctatccaa      3960
     tgatcaggca tttgccgctg cacggaaaaa tgcgaatgtt gatggcatac aacacattat      4020
     ggaacgaagg tcgttttcct gagaaatgga aggaaggtat agtgatacca attcctaaac      4080
     ctggacaacc acaacaacat gcagaaagtt atcgtccaat aactctcctt agttgcattg      4140
     gcaaaattta cgaacgacta atcaatcatc gactcatggt tcatttagaa tcaaatgatc      4200
     tcttgaacca aaaccagcat gcgtttcgaa ctggaaaggg aaccactacc tattttgctg      4260
     acctgaatga gatcatgacc gatgctctca aaagaaaact tcattgtgag tttgccctgt      4320
     tggatctacg aaaagcttac gacacgacat ggcgtcctca tattatccag cgagtacgag      4380
     aactgaatct agggatcaat atgacgaaaa gtattgaaag cttcttgaaa gataggaaat      4440
     tccgtgtcag ttttggggga gcactatctt cttcaaagac tcaagaagat ggagtcccac      4500
     aagggtcggt gttgtccgtc acactcttca ttatagcaat ggacaccgtc ttcaacgtga      4560
     tcccatcagg ggtgacagca ctcatttacg ccgatgatat tttattagtc actgtgggta      4620
     agaaggtcag cagtaccaga aagcgtctaa gccttgctgt taaagccgtt tgtgagtggg      4680
     caaaatggac tcattttgaa atctcaccca acaagtcttc acttctgcat gtttgtcgag      4740
     aaaaacacag aaattggaag aaaaacagga aggaaattaa gattaatgga gagagcatac      4800
     ctgacgtcaa aacagcgagg atactgggag tttggattga cagccgagta actttcaaaa      4860
     agcattttaa aaatactttg aatgcaatac aaagtcggat caactttctt aaagcaatag      4920
     caagtcgtgc aaacagggaa gtgatctgga aaatagctaa tgcaacttgt atctccaaat      4980
     tactttacgg gatcgaactc ttcggtttaa gatgtattga gccataccaa tcatctttca      5040
     atcaactgat tcgcttggcc tctagtgcgt ttaggacttc accatctctg gctttggcta      5100
     ttgagagtgg ggaacttcct ttcaaagaaa gggttgcatt agcgtacatt cgtagctact      5160
     gtaaaattga agaaaaaagc caccaatatc gaacagcctt tcgcgaaaac atcgagcaac      5220
     tttcaacaac cttttttggg gaagctttcc ctcaaatcag taaactccat cgttttggac      5280
     agcgaccttg gtattatgct cgaccaaaaa ttgattggac gataaaaagg aatttcaaag      5340
     ttggagaagg agctcataaa gctcgtgctt tcgttaacgg acttttgaac agtgaatata      5400
     agcagtatac gagaatttac accgatggat ctaaagatga agtaggtgtc ggatgtggtg      5460
     taattggtgt cgatttcatc atcgaaggtc agcttccttc cagcagttcc gtattttcag      5520
     cagaagcggc cgcattagca attgccgtgt accacgcgga taacacacca acagttattt      5580
     taacagattc tgcaagctgt ctttctgctc tcgaaaaagg aaacatcctc catccgtaca      5640
     ttcaggcgat tgagacattt tccgaaaaca aacatgtagt ttttctttgg attcctggtc      5700
     attgtgacat atctggaaat gtaaaagccg atcaagcagc aaaaaggggt agaacaggac      5760
     tagctttaga atttgaagta cctgcgaaag atttaatatt gtgggctaag cataagatga      5820
     aagatattgt gcaatctaga tggatcggta atactaccga tcaattagct ttagtaaaga      5880
     gaagtattgg aaaatggaat gacaaaatga agaagagcga tcaacgagtg ctcaccaggt      5940
     gtaggattgg tcatacgcgc ttaacaaaat gccacttgtt ttcaaaaaat gatcccgata      6000
     tttgtgattt gtgtaacagt tctctagatg ttaaacatat tttattggaa tgccgaaaat      6060
     ttgatgatat cagaaggaga ttaggaatca gctcgaatat tagtatagct ctaagtaatg      6120
     accaaaaaga agaaaacaaa attataaagt atctcaaaaa taccggatta tataaccaac      6180
     tttaaactaa aacagaggcg aatgaattgt attttaaagc ctctttaata aataaaaaaa      6240
     aaaaaaaa                                                               6248
//
ID   I_Ele34     repbase;    DNA;    INV; 6727 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele34.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6727
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6727
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (26-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >96% identity, and ~98% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           384..1745
FT                 /product="I_Ele34_1p"
FT                 /translation="MSGASPGPPGGTERTICRSNVPEWMLGPDDLGQTMVL
FT                 VLRRKLKENDXXDQTQXKATLPDSIIVGASIELKIGVKEARSTNATREGRG
FT                 TRYILRTNSRSILEKLTKITHLTDGTEIEIAPHPTLNTVQGVVYDLDTVNK
FT                 DENLILDYLKPQGVQSVRRIKKRVNGTLKNTPLLVLSFNGTVVPDYVYFGL
FT                 LRIXVRPYYPSPMICFNCGSYGHSRKFCQQPSICLRCSVQHDTPEGEQCTN
FT                 PPSCLHCKAEHQATSRDCPKYQQEEKIVRLKVDRNVSITEARRIFAEENKQ
FT                 ETFXGVVQEQIQQQLAAKDVLIVTLQKQVAALTKEVAVLRNVLKSSTQSQS
FT                 TSQRDQQIATTRQRSSSKNPSNTTTPQNQPAQRDRLSRKDHCFITPQTDQL
FT                 ENLRNNREQYNVQTRSRSSKRHMEISPTETVNNRGKRISAQSNTSSASTNA
FT                 ETNNGPGSS"
FT   CDS           1729..5898
FT                 /product="I_Ele34_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MGQDHPKAIHQTTNKNDPATKHDKTLNKRLPPPTFGN
FT                 LDNCKNSDNDSDQQKRTSAXSTTTXIGKVTTTTXVPKHSALTAAEYDRIHH
FT                 LXSIPSTSKTMSVLQHDSPRARPPTSTLTRDVPDYSDEPLAAVGVGSPLXR
FT                 ASIFSSXSSQEQTTASLFPSNSGRSCIKSSVEVFQCSDSPSARPPTSTLTR
FT                 NVPDYSDELLAAVDVGRPYSRASILTPLFYREQSNPAFFHTNAEKHTTNIN
FT                 FXQNTPLSSSAPTDRPSSITSPLRVTATPPHPDSPSARLPTSTLTRDVPEL
FT                 SDEPLAAVGVGWPYTRASITTLFQYKNPSTSAFFLANAGSSTEVIPGADAI
FT                 NQPASTHHQRNDKAVTSTSHSTTVWKDTGEVISESNTPDRRSVQPPTTNTN
FT                 HNTTSRPISPSPSQASTDSEPFPSGGNAAPSFAVQWNISGLRSHLAELQLL
FT                 IGKHQPIIIGLQETNADSNRLDQNCLGKNYKLFLSHCSPHGRQGAGMAIKI
FT                 GTPFQLINLKTKIQAVAVKLYTPIPITVASIYLPPKDKNAVEALDELLKEL
FT                 PKPTLILGDVNAHHTAWGSRTSNSASECKKRGETILEMIVQHDMVILNNGS
FT                 HTRIDPSTGASQALDVSFCSATHAAKFKWNTLLEYSGSDHLPILIDTHSXR
FT                 XETQHRPKWIFGKANWELYEQIITNSICSGAILTVDEFTNKIISAAESSIP
FT                 KTTGNIGRKYVPWWNSEVEATIKARRKCLRALRRLEDNDPRKIAALKQFQE
FT                 ARSICRKTINDAKLKSWESFVESINPDTPTSQVWNNINRLQGKRKNSTIAL
FT                 NLPTGHTNDGEKVANALADEYQKKSSDEHYSEQFRRKHKADNCETFKNQRS
FT                 NLHKXYNTDFTIXELIWALNRRGGSSTGADNVSYTFLQRLPFSAKVALLNL
FT                 YNRIWDSGIFPSQWKVGTVIPIPKHDADRSKPEGXRPITLLSCLGKLFERM
FT                 VNRRLITELETSGKLDXRQHAFRSGKGVDSHLATLESHIDLKPDEHVEIVS
FT                 LDVSKAYDTTYRPAILRTLSRWRISGRMMNIVSSFLCDRYFRVAANGSLSS
FT                 LRKAHNGVPQGSILSVTLFLVAMQPIFDVIPSGTEILLYADDVLLIVKGKN
FT                 HGDIRRIMKKSVKAAVGWATDVGFAIAPTKSKLMHVCSSRHRKCGRAIKID
FT                 NIPIPRVRSLKVLGVVIDSKLNFIKHFSSIKQSCQRRTQILRILGYRLKRS
FT                 SRATLLKIGSALVHSKLYFGIGLTSGNIADMERILGPTYNDVIRQATGVFA
FT                 TSPIISIMAEAGCLPFHFAIIQRLTQLAVRLLEKTEDVAGLPLIQRVRTLL
FT                 MDLTGWCLPDICKTLRTADRAWHSPSPTIDLVLNVISRPVKTRSLHCLSSM
FT                 ILSRLATVDMXNCIRMAPKITDISAPV"
XX
SQ   Sequence 6727 BP; 2090 A; 1754 C; 1389 G; 1462 T; 32 other;
     cattcgtgct cgggatacag caacccatca tcacgcgcgg atagctcata ttaaattagc        60
     tcttttctgc ataattacca cctttaaata tccgccgctt gtggccaawc gatagacgtt       120
     acgtgaatct acgccggtat agtgaagttt ttgtgaattc taatgcaacc gaagtgattt       180
     ttacaataaa ctgttggtgt acatatcacg cggttgcgtc gcagtgtatt gatttatcca       240
     cacatacgcc gtcgctgtat agtgaaaaca aagcacaata taccgagtga taggtgataa       300
     cgaagaagga tcaaatccag tttcgttgaa aaagttttgc cgataataaa agtggaatag       360
     atagtactca acaatccgga ctaatgtccg gcgcatctcc tggcccccct gggggcacag       420
     agagaacgat atgccgcagt aatgtgccag aatggatgct tggkccagat gacttgggac       480
     aaacgatggt gcttgttttg cgtcgcaagc taaaggaaaa tgackctgkt gatcaaacgc       540
     aagawaaagc aactttgcca gactcaatma ttgtgggagc ttccatagag ctgaaaatag       600
     gagttaaaga agccagatca acgaatgcaa ctcgtgaagg tcgcggaaca cgctacatcc       660
     ttcgaactaa ctctcgaagc atactcgaaa agctcacmaa aatcacccat ctaactgacg       720
     gcactgagat cgaaatcgct ccccatccta cactcaacac tgttcaaggt gtagtctatg       780
     acttggacac cgtcaacaaa gatgaaaatc tgatwctgga ctaccttaag ccacagggcg       840
     twcaatcagt aagacgcatc aaaaagcgag tgaatggcac cctcaaaaat acaccgctgt       900
     tggtcctttc gttcaacggc acagtagtac ccgattacgt ctactttggc ttacttcgga       960
     tcscagtccg tccctactac ccctccccta tgatttgctt taactgcgga tcstatggac      1020
     attccaggaa attctgccag cagcccagca tctgccttcg atgttcagta caacacgaca      1080
     cgcctgaagg ggaacaatgc accaatcctc caagctgtct tcattgcaaa gctgaacacc      1140
     aagcaacttc gcgcgattgt ccaaaatacc aacaggagga aaaaattgtc cgtcttaaag      1200
     tggacagaaa cgtttctatc actgaagcaa gacgcatctt cgcagaagaa aataaacagg      1260
     aaacattckc aggggttgtc caggaacaaa tccaacaaca actggcggcc aaagacgtcc      1320
     tgatagtcac actgcagaaa caggtggcag cactgacgaa agaagtcgcc gtattgagga      1380
     acgttttaaa atccagcact cagagtcaat caacatcgca acgtgatcaa caaatagcaa      1440
     ccacccgtca aagatcgtcg tctaaaaacc catcgaacac tacgacgcca caaaaccaac      1500
     cagcacagcg cgaccgttta tctagaaaag atcattgttt catcaccccg caaactgacc      1560
     aactagaaaa cctcagaaac aacagggagc aatacaatgt acaaacgcgc agcagaagta      1620
     gcaagcggca tatggaaata tcgcctaccg aaaccgtaaa caaccgggga aagcgaatat      1680
     cagcacagtc gaatacaagc agcgcatcca ccaacgccga gacaaataat gggccaggat      1740
     catcctaagg caattcacca gaccaccaac aagaacgacc ccgccacwaa acatgacaag      1800
     actctaaata aacgacttcc acccccgacc ttcggcaatc tcgacaattg caaaaactcg      1860
     gacaacgact cagatcaaca aaaaaggacc tccgcagwct caacaaccac aaakattgga      1920
     aaagttacca ccacaactgm tgtaccgaaa cattctgccc taacagcggc cgaatacgat      1980
     agaattcatc acctcawtag catcccatca accagcaaga caatgagtgt cttacaacat      2040
     gattcgccac gcgcgaggcc ccccacgtcg accctgacca gagatgttcc ggattattcc      2100
     gacgagcctc tggcggctgt tggcgtgggc agcccactcm accgggcaag tattttctca      2160
     agttwttcat ctcaagaaca gacaactgcc agccttttcc cctctaattc aggacgttcc      2220
     tgcataaaat catcggttga agtcttccaa tgctctgatt cgccaagcgc gaggcccccc      2280
     acgtcaaccc tgaccaggaa tgttccggat tattccgacg agctcctggc ggcagttgac      2340
     gtgggccgcc cgtattcccg ggcaagtatc cttacaccac tattctatcg agaacagtca      2400
     aatcccgcct ttttccatac caacgcagaa aagcacacga ccaacatcaa ctttmctcag      2460
     aacacaccct tgtcgtcttc agcaccaacc gacagaccta gcagcatcac atctccacta      2520
     cgagtgacag caaccccacc acaccctgat tcgccaagcg cgaggcttcc cacgtcgacc      2580
     ctgaccaggg atgttccgga gctctccgat gagcccctgg cggcagttgg cgtgggctgg      2640
     ccctataccc gggcaagtat cacaacacta tttcaataca aaaatccgtc cacttccgca      2700
     tttttcctcg ctaatgcagg atccagtaca gaagtcatcc ccggtgccga tgcaatcaac      2760
     caacctgcta gcacacatca tcaaaggaac gacaaagcag taacttcaac atcgcactca      2820
     acaaccgtct ggaaagatac tggcgaggtc atcagcgaaa gcaatacacc cgaccgacgc      2880
     tccgtgcaac ccccaacgac gaataccaat cacaacacta ctagcagacc catctcaccc      2940
     tcaccatctc aagcatcgac tgactccgaa ccgtttccct ctggtgggaa cgctgctcca      3000
     tcctttgccg ttcagtggaa cattagtggc cttcgctcgc acttagccga actccagctc      3060
     ttgattggca agcatcagcc tatcattatt ggcctgcaag aaacaaacgc tgatagcaat      3120
     cgattagacc aaaattgtct tgggaagaat tacaaactct tcttaagcca ctgctccccg      3180
     cacggtaggc aaggtgctgg aatggccatc aagattggaa cccccttcca gttaatcaat      3240
     ctgaaaacca aaattcaagc ggttgctgtg aaactttaca caccgatacc aattacggtt      3300
     gcctcaatat acctcccacc gaaggataaa aatgccgtcg aagcgctgga cgagcttttg      3360
     aaagagctgc ccaaaccaac tctcatactt ggtgacgtaa acgctcacca tacggcatgg      3420
     ggaagtagga cgtccaattc agcatctgaa tgcaagaaaa ggggtgaaac catactggag      3480
     atgatagtgc agcacgatat ggtcattcta aacaacggtt ctcacacacg tattgaccca      3540
     tccactggag catcgcaagc cctcgatgta tcmttttgct ctgcaacaca tgcagctaaa      3600
     ttcaaatgga acactcttct agagtactct ggtagcgacc acctcccaat tctaattgat      3660
     acccatagca awagagktga aacacaacac agacccaaat ggatatttgg taaagccaac      3720
     tgggagctct atgagcaaat catcacaaat agtatttgtt cgggggctat tctgacggtg      3780
     gacgaattca ccaataaaat tatatctgcc gcggaatcca gcatcccaaa aactacaggg      3840
     aacatcggac ggaaatatgt accatggtgg aacagtgaag tggaggcaac aatcaaagct      3900
     agacgaaaat gcctacgagc cctccgtcgt ctcgaagaca atgacccacg gaaaatcgcc      3960
     gctttgaagc aatttcaaga ggcccgttcc atttgtcgca aaactatcaa cgatgcgaaa      4020
     ctcaaaagct gggagagctt tgtagaaagc attaaccctg acacaccaac ttcccaggtg      4080
     tggaataaca tcaacagact tcaaggcaaa agaaaaaaca gtactatagc gttgaacttg      4140
     ccaactgggc acaccaacga cggwgagaaa gtagcaaacg cwctggctga cgaatatcag      4200
     aaaaaatctt cggatgaaca ctactctgaa cagtttagaa gaaaacacaa agcagataac      4260
     tgtgaaacct tcaaaaatca gcggtccaac ctccacaagc wctacaacac agacttcaca      4320
     atagawgaac tgatttgggc acttaaccga cgaggtggca gctcgaccgg cgcagacaac      4380
     gtgagctaca ccttcctgca acgccttccc ttttctgcaa aagttgccct tctcaacttg      4440
     tacaacmgaa tatgggacag cggaatcttc ccatcgcagt ggaaagttgg tacagtaata      4500
     ccaatcccaa aacatgatgc agatcgtagt aaacctgaag ggtwtcggcc tataaccctt      4560
     ttaagttgcc ttggtaagct gttcgagaga atggtgaacc gtaggcttat caccgagctg      4620
     gaaaccagtg gcaaactcga tgsacgccaa catgccttca gatctgggaa aggtgtcgac      4680
     tctcatctgg ccacactaga atcacacatt gacctcaaac cggatgagca cgttgaaatc      4740
     gtctctcttg atgtctcaaa agcctatgac accacatata gaccagcgat tctacgtaca      4800
     ctatccagat ggcgtatttc aggaagaatg atgaacattg tttccagttt tctctgcgac      4860
     aggtactttc gagttgctgc aaatggctcg ttgtcttcac tsaggaaagc acacaacggt      4920
     gtgccccaag gctcgattct ttccgtgaca ctttttcttg tggctatgca gcctattttt      4980
     gacgttatcc catccggtac agaaatcctt ctctacgcag acgatgtgct ccttattgtg      5040
     aaggggaaaa atcacggaga tattcgtagg attatgaaaa aatctgtcaa agcggctgtc      5100
     ggttgggcca ctgatgtggg atttgctata gctcctacaa agtccaagtt aatgcatgtc      5160
     tgctcctcac gccaccgcaa atgtggtcga gcaatcaaaa tagacaatat tcctatccca      5220
     agagtacgaa gcttgaaagt tctgggcgta gtaatcgact ccaaattaaa ttttataaaa      5280
     cacttttcgt ctataaagca aagttgccaa agacgaactc aaatccttcg aatacttgga      5340
     tatcgcctca aaagaagcag cagagcaaca ctcttgaaaa taggaagcgc actcgtccac      5400
     tcaaagctgt acttcggcat agggctaaca agtggcaaca ttgcagacat ggaaagaatt      5460
     ttaggtccaa catacaacga tgttattcgg caagcaacag gggtattcgc aacaagcccg      5520
     atcatctcaa ttatggccga agctggctgt ctccccttcc actttgcgat aatccaacgc      5580
     ttaactcaac tagcagtccg actacttgaa aaaactgaag atgtagccgg gcttccctta      5640
     attcaaaggg tcagaacact gctgatggac ctaactggat ggtgccttcc cgatatctgt      5700
     aaaacgttga gaaccgcaga cagagcatgg cactcgccat ccccaactat tgatctagtc      5760
     ttaaacgtaa tatcaaggcc ggtgaaaaca agatcactgc actgcctaag ttcaatgatt      5820
     ttatcacgac tcgctacagt agacatgama aattgtatac ggatggctcc aaagataacg      5880
     gacatatcgg cgccggtgta gtcacgggta gtagcaatct gagcttccgc ctcccagatt      5940
     catgcggaat attttctgcc gaagccttcg ctttaaaaat agctgtctct aatgtacaaa      6000
     gggcaaaaac gattattttg actgattcgg cgagctgcat tgacgcgcta ggtggaggtc      6060
     gatccaaaca cccatggatc caatccatcg aggagatggt tgtgggaaaa gacatcactt      6120
     ttagctggat tcctggacac gccggcattg ctggcaatga gaaagcggac gagctagcga      6180
     agcaaggaag gactctaacg cctgtggaca ttcccatacc agcccaagac gcgattcgta      6240
     ctatgaaaag taaaatatgg gaagtttggg agttggaatg gcatcgaagt caagtgcatc      6300
     tacgtgaaat caaaccaaca cccactaggt atccagaccg gaagtctcca tgcgaacaac      6360
     gagttctgtc acgaatgcgg atagggcaca cacgcatcac ccacgctcat ctgatgagtt      6420
     ccaacccccc accaacatgc aatttctgcg gagtgcatat aacagtacgt catcttctgg      6480
     ttgactgcaa aggattggag ccaagtagaa aacgctgtgg tattaccgga tcgctcaatg      6540
     aaatattagc ctacaacaaa gacagagagg aagcagtaat acgattcttg atagactgta      6600
     atttgtttaa agaaatctaa taactcatct atagtagcaa tgtaactaac tactacaaat      6660
     aattaatctg acacgaatgc cacgctggtg gtaaagtgtc acaaataaac taataataat      6720
     aataata                                                                6727
//
ID   I_Ele35     repbase;    DNA;    INV; 6543 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele35.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6543
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6543
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           336..1775
FT                 /product="I_Ele35_1p"
FT                 /translation="MMPVSATSPRFRDPGGPGGGGPSNMFRGDYAGQLVPF
FT                 HMDNDGCSGAIQVLQMKATEGKLPCDPFLLRFSIEKWIGKAIDGAFKENQG
FT                 ISYALKVRNTAHFQKLLKMDQLADGTKIQIMEHPTLNKRECVVSNYDCVDL
FT                 SDEYLLEQLSDQGVRGIRRIKKKNPDGKWVNSPTIILTISGTVIPDHIDFG
FT                 WSRCRTRNYYPAPMLCYKCWEYGHTKKRCSQPHETCGVCSQVHDAGSNMDP
FT                 ASRINESTVETSRSPPCTNSAFCKLCKSNDHPVSSRKCPVYLKEVQIQHIR
FT                 IDKGYTYPQARREFESMQENHNSNRDSFAGIAAHSKDKEISDLSDTVRRLI
FT                 EDSRKKDNRIAELEKSLQGRSTTYRMDQVKQHGTIEDLIVKVDQLSRNVTE
FT                 LQDIIKKKDLEIEYLRKIYVNPTESQLNSTLNVTIPETQDMTTDSTSQIDA
FT                 YDSIPDNKLTSQCLDWINQSGKNPKKKKKSSKNGP"
FT   CDS           2353..6339
FT                 /product="I_Ele35_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDSVGVMFGHSTSSSPSNSEQTQRRYPTRTRREPLRF
FT                 QSETSVFQPLGPEATNADLYDRLHARRYGNSGTNQPGTSQHYPSLRTNQYS
FT                 PAPVLSKSPIAVPPPNEVLSRSNAKKTPYASRCCKQNSCFALQWNMNGFFN
FT                 NLPDLQLLVRERKPAILALQEIHKASISWMETSLSGGYKWITMCCENFYHS
FT                 VALGISAEIPFSQIDLDTELPIVAARISWPFPVSVVSFYLPNGTFSNLENQ
FT                 IRQILAQIPEPVILLGDCNGHHRAWGSKANNTRGIMMVEVANELNLTFLND
FT                 GSTTFISGQRETTVDVTLTSASISHVLQWAADIDPLGSDHVPITLFLNDSP
FT                 PETSRRPRWLYDQADWSSFQNLIEVSLDHTTPDSIEEFVELIHDSARSTIP
FT                 KTSPTPGRRALPWWSNETKKAVKLRRKALRAAKRLPAGHPNKDEATKKYRE
FT                 ARNECRQTIRKAKECSWISFLDSINDNQSTADLWKRLNAILGKRRAKGIAL
FT                 KIDSCTTRNPAIIADSLADYFADLCSLQRYTTVFLNRIPTPAEAIKNFVVP
FT                 PDRNQQFNEPFSINELALVLQQGKGKSSGPDDIGYPMLKRLPVRCKSILLG
FT                 LINREWTNGTFPNIWKHSLVVPIPKNSGIASETKHYRPIALTSCLCKIMER
FT                 LVNRRLIQYLQENNRLDHRQHAFRPGFGTGTYFAALGQILDEAMARGDHIE
FT                 IASLDLSKAYNRAWTPNVLQKLAQWGVTGNMLTFIKNFLSDRSFQVMIGNH
FT                 RSKTVPEETGVPQGSVIAVTLFLVAMNGVFQILPKGIYILVYADDIILISI
FT                 GKTPKNTRRRLQTAVNAVTKWTDLSGFEISAEKSARLHICSSSHIPPRNPI
FT                 TIRGTPVPTKKTMKILGVLFDRSFSFRQHFTNLREDCKSRINFLKTISNKR
FT                 TKSDRISRIRVADAVINSRIFYGIEITCRSFELLVQNMSPTYNEAIRAISG
FT                 LLPSTPAIAACIEIGTLPLVHRTVIAVGSRAISYLERTRGDGSVVFTVREA
FT                 NRILESVAGVKIPPVAGVHWNGSSRWQSRLPKIDFKIKGNFRAGCNPTILR
FT                 SAFQERISTKYTQHTIRYTDGSKALGRVGIGIYGDGISESHQLPDKCSVFS
FT                 AEAAAILQAVSHPYDGSLLVVTDSASALLALASPVSRHPWIQATQIAVAES
FT                 NNITFTWVPGHCNITGNESADHLANFGRTCRLRTRKTPGEDLKKWLKSTVK
FT                 IAWASEWSQSRDLFIRKVKGVTTPWEDVPNRKDQVVLSRLRTGHTRVSHSM
FT                 GGEPEFRKKCLLCNIHNSVEHFICNCPAFDHLRQEYGIGSIRSALQNDRAS
FT                 ETALICYLKEAGLYQDI"
XX
SQ   Sequence 6543 BP; 1999 A; 1588 C; 1375 G; 1578 T; 3 other;
     cagttgccgg ctcacattgg tcgagtttgg tcacgttttg ctttcgctcc gtagcctctc        60
     ggttatagaa aggtctattg ttcgattgtt tttttttgct gcttttattg atcagccgaa       120
     acctttgttt cctgctttgt gtttcgatca cacccggtgc gttatcgtcg cgatatagtt       180
     ttcttggttg tggcccggct ggttgaccag cagactgtcc agtcgttttc ggagaggtgt       240
     attttaaact tgtgcgcgtg cgtttcagtg ttccgtttca tatttccact gtgcgaaagc       300
     attaatccgt gattgtgaat ccccgcgccg ccggcatgat gccggtgtcc gcgacctccc       360
     ctcgtttcag ggatccaggg ggccctgggg gtggaggtcc aagcaacatg ttccgtggtg       420
     attatgctgg acaactcgtt ccgtttcaca tggacaacga tggctgctcc ggtgctattc       480
     aagttcttca aatgaaggca accgaaggta aactaccatg tgaccccttt ctcctgcggt       540
     tttctattga aaagtggatc ggtaaggcaa tcgatggtgc cttcaaagaa aaccagggta       600
     tctcmtacgc actgaaggta cgaaatacag cccatttcca gaagctgttg aaaatggatc       660
     agcttgcgga cggaactaaa atccaaatta tggagcatcc gacattaaac aagcgggaat       720
     gtgtggtaag taactacgac tgtgttgatt taagcgatga atacctcctg gagcaactaa       780
     gtgatcaagg cgtacgtggt atccgccgta tcaaaaagaa gaatcccgat ggcaaatggg       840
     tcaacagtcc aacaataatc ttgacaatct ccgggacagt gatacccgat cacatcgact       900
     ttggctggtc acgctgtaga acacgaaatt attatccggc tcccatgctt tgttacaaat       960
     gctgggagta cggccacacc aagaaacgtt gttcccaacc ccatgaaact tgcggtgttt      1020
     gctcccaagt acacgatgca ggcagcaaca tggacccagc ctcccggatc aatgaatcta      1080
     cggttgaaac aagcagatct ccaccatgca ctaattcggc attctgcaaa ctatgtaagt      1140
     cgaatgacca cccggtgtcg agccggaagt gtccggtata cttaaaagag gtacagattc      1200
     aacacattcg aatcgataaa ggatacactt acccacaggc caggagggaa tttgaatcga      1260
     tgcaggaaaa ccataattcc aaccgtgatt ctttcgccgg aatcgcagcc cacagtaaag      1320
     acaaggaaat atccgacctc tccgatactg tacgacgatt aatcgaagat tcgagaaaaa      1380
     aggacaacag gattgccgaa ctggaaaaat cgttgcaagg gcgcagcact acttatcgaa      1440
     tggaccaagt caaacagcat ggaaccatcg aagatctgat cgtcaaagta gaccagctgt      1500
     ccagaaatgt taccgaattg caagatataa taaaaaagaa agacctggaa atcgaatacc      1560
     tgagaaaaat ctatgtaaat cccaccgaaa gtcagttaaa ctctacatta aacgtgacta      1620
     ttcctgaaac acaagacatg acgaccgatt ccacatctca aattgatgca tacgattcca      1680
     ttccagacaa caaattgacc tcgcagtgcc ttgactggat aaaccagtct ggaaaaaatc      1740
     cgaaaaagaa aaaaaaatcg tcaaagaatg gaccttgaca atggcatgga aatttcatcc      1800
     gacgatagca tagaaagtaa taagtcaatt acatccgtca aaacgaccac atctatgaat      1860
     ggaccatcta agagaaacca cgtcgactgt ggccacggca gcgactccag caagccttcg      1920
     aaacccaaam gaagcgaccg tggaggccag agaaccacta atcgactctg aaaaccttac      1980
     ctctccgatc agtcatcccc gaaaaaaaaa aaaaaaaact tcatcacctg gtagtacgcc      2040
     ctawgcacta ttttcaaccc aaagaagaga atcagcgaaa agtcttcaac tagggtgact      2100
     gatcatgtac aaaacgaagc agttacgaac caggatccaa ccgacgacaa caacattcac      2160
     acggcagagg ctctgggtag tcggggcccc gtcagtgcgg acgctacacc cctcccggta      2220
     ctggcggaca acctccggca tccagcagcc agctgttttc gcgggacgca caagggttcc      2280
     caaacccgtt ccccgccgtt cccaagcaca tccggaagag agaaagacaa ggaagttcac      2340
     accaattccc caatggacag cgttggagtc atgtttggac actccacttc atcttcccca      2400
     tcgaacagcg agcaaaccca gagaagatac cctacccgca cgcgtcgtga accactccga      2460
     ttccaatcgg aaaccagtgt tttccaacca ctgggcccgg aggccaccaa tgcggattta      2520
     tatgatagac tgcatgcccg aagatatggt aattcaggta caaatcaacc aggtacgtca      2580
     caacattacc cctctcttcg aacaaatcag tattccccag cccctgtatt aagtaagagt      2640
     cccatagcag tgcctcctcc caatgaagtt ctatccaggt ccaacgctaa gaaaacacca      2700
     tacgcttctc gttgctgcaa gcaaaattct tgttttgctc tacaatggaa catgaatggg      2760
     ttttttaata acctacccga tctccagctg ctcgttcggg agcgaaaacc agcaattcta      2820
     gcgttacagg aaattcacaa agcctcaatc agttggatgg agacctctct ttccggagga      2880
     tacaaatgga tcaccatgtg ctgtgaaaac ttctatcatt ccgttgcact cggcatctca      2940
     gcagaaatcc cattctctca gatcgatctc gataccgaac ttcccattgt agcagctcga      3000
     atttcttggc ccttccctgt ctcagttgta tcgttctatc ttccaaatgg cacattttca      3060
     aatttggaaa atcaaatccg tcagattcta gcgcagatac cagaaccagt tatcctatta      3120
     ggggactgta acggacacca tcgtgcatgg ggaagcaagg caaacaacac tcgtgggata      3180
     atgatggtcg aagtagcaaa tgagctcaac cttacatttt tgaacgatgg gtccactacc      3240
     ttcattagtg ggcaaagaga aaccactgtg gacgtcacac taacgtcagc ttcaatttca      3300
     cacgtgctac aatgggctgc ggatattgat ccactaggaa gtgatcatgt accaattaca      3360
     ttgttcttaa atgacagccc tcccgagact tcacgtcgac ctcgctggtt gtatgaccaa      3420
     gcagattggt catctttcca aaatttaatt gaagttagcc tagatcatac aacaccagac      3480
     tcgatcgaag aatttgttga acttatccat gactccgcaa gatcaacaat ccccaaaacg      3540
     agccccaccc ctggacgtcg agctcttccg tggtggtcaa atgaaaccaa aaaggcggtt      3600
     aaactaagaa gaaaagctct tcgtgcagcg aaacgattgc cagctggcca tcccaacaag      3660
     gacgaagcta ccaaaaagta tagggaggct agaaatgaat gtcgccaaac catccggaag      3720
     gcaaaagaat gcagctggat tagcttctta gatagtatca acgacaatca atctacggcc      3780
     gatttatgga aaaggttgaa tgcaatccta ggtaaacgac gagcgaaagg gatcgccctc      3840
     aagattgaca gctgtactac gcgaaatccg gctataatcg ccgattcctt agcggattat      3900
     tttgctgatc tctgttctct tcagcgatat acaactgttt tcctcaaccg tataccaaca      3960
     ccagctgaag ctatcaaaaa ctttgtggtt ccaccggaca ggaaccaaca atttaatgag      4020
     ccattttcga tcaatgaact ggctcttgtt cttcaacaag gtaaaggaaa atcatcggga      4080
     ccggatgaca taggctatcc gatgctaaag cgacttccgg tacgttgcaa atccattttg      4140
     ctaggcctaa ttaacagaga atggacaaat ggcacctttc ccaacatctg gaaacacagc      4200
     ttggttgttc caatcccaaa aaattctgga atagcaagtg agacgaaaca ctaccgccca      4260
     atcgccctca ccagctgttt atgtaaaata atggagagac tggtgaacag aaggcttata      4320
     cagtatctac aagaaaataa tagactagat catcggcaac atgctttccg gcctggattt      4380
     ggtacaggta cgtactttgc ggctttggga cagattttgg acgaagcaat ggctcgcggg      4440
     gatcacatcg aaatcgcctc tcttgaccta tcgaaggcat ataatcgagc atggacacca      4500
     aacgtgcttc agaaactagc acaatggggc gttaccggca atatgctaac atttattaag      4560
     aattttttaa gtgatagatc attccaagta atgataggaa atcaccgatc gaaaacagta      4620
     cccgaagaga caggcgttcc ccagggctct gtcattgcgg taaccctctt cttagtggcc      4680
     atgaatgggg tcttccaaat tcttccaaaa gggatatata tactagtata tgcagatgat      4740
     atcattctaa tatcaatcgg taaaactcct aaaaatacta gacgtaggct tcagacagcg      4800
     gttaatgctg tgacaaaatg gactgaccta tctggatttg aaatttcagc ggaaaagagc      4860
     gcaagactgc acatatgctc aagtagtcac atacccccac gaaatccgat aaccatcaga      4920
     ggtaccccag taccaaccaa aaaaacaatg aagatactag gagttctatt tgatcgtagt      4980
     ttcagtttcc ggcaacattt tactaatctc cgtgaagatt gtaaaagtag aatcaacttt      5040
     ttgaaaacca tctctaacaa acgcacgaaa agtgacagga tttcacgaat tagagtcgca      5100
     gatgctgtga tcaatagtcg tattttctat gggatcgaaa taacctgccg ttcatttgag      5160
     cttctagtcc aaaacatgag tcccacctat aacgaagcaa taagagctat atccggctta      5220
     ctcccatcaa ctccggccat tgcagcatgt atcgaaattg gtacccttcc actagtgcac      5280
     cgaactgtaa ttgcagtagg tagcagagca atcagttact tagaaagaac tcggggtgat      5340
     ggatcggtgg ttttcaccgt tcgtgaagct aaccgaatcc tagaatcggt tgctggcgta      5400
     aaaatcccac cagtggctgg ggtccactgg aacggatcta gtcgctggca gtctagactt      5460
     ccaaaaattg attttaaaat caaaggaaat tttcgtgctg gttgcaatcc caccatttta      5520
     cggtccgctt tccaagagag aatttcaacg aaatacacac aacataccat ccgatacacc      5580
     gatggttcta aagcccttgg tagagtcgga attggtatct acggtgacgg catctcggaa      5640
     tctcatcaat taccggacaa atgttcagta ttttcagctg aagcagcagc gatactacag      5700
     gcggtatcgc acccatatga tggatcgctc ttagttgtca cagattcagc tagtgcactt      5760
     ttagctctgg cctcaccagt ttcgcgtcac ccttggattc aggccacgca aatcgctgtt      5820
     gccgaatcaa acaatattac atttacctgg gtacctggac actgcaatat tactgggaac      5880
     gaatcagcgg atcatctagc aaactttggc aggacatgca gattaaggac ccgtaagacc      5940
     cctggagaag accttaaaaa atggctcaaa tcaactgtca aaatagcttg ggcctcggaa      6000
     tggtcccagt ccagagatct ctttattaga aaagtgaagg gtgtaacaac accctgggaa      6060
     gatgttccaa atcgcaagga tcaagtggtt ctttctcggc tccgaacagg acacaccaga      6120
     gtatctcaca gcatgggagg cgaaccagaa ttccgaaaga aatgcttatt atgtaacatt      6180
     cataactcgg tagaacactt tatttgcaat tgtccagctt tcgatcatct tcgtcaggaa      6240
     tacggcatag gaagcattcg ttccgccctt caaaatgacc gtgctagcga aacagcactc      6300
     atttgttacc ttaaagaggc aggcctttat caagatatat aactacaacc aaacaaagct      6360
     aaacactgaa agatcgaata atattaatat taacattgta ttaaacaaac tctgtcaaac      6420
     tctgtaactt ctataaactc tgtaaattcc tggagtgccc ttatggtacc ccaccttttt      6480
     cctcgagacg aaccagccaa gggctgaaag tctcgttaat aaagacaata ataataataa      6540
     taa                                                                    6543
//
ID   I_Ele36     repbase;    DNA;    INV; 6805 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele36.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6805
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6805
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 4
CC   sequences with >99% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           544..1794
FT                 /product="I_Ele36_1p"
FT                 /translation="MCELKTSYRIRLLLAKELKLVIGLKEARAVEAIREGR
FT                 GARCLLRTNSLSTYQKLQKIVRLPDGTDVEVFPHATLNTIQGIAYHPDTVD
FT                 VDEESALDFLSSQGVKHVRRIKKRFGKDFRNTPLTILTFHGTVLPEYVYFG
FT                 LMRVQIRKYYPNPMVCFNCGNFMHTKKNCTQDKICLNCSQAHDMVEGVACP
FT                 NAPFCKNCRGSHSCVSKECPVYAEEEKIIKLRIDQGITFGEARKQIKEQKT
FT                 QTTYASCVQHRMSADELGKDEIIQALRAELQTARSEFNQLKELYKKSIHQL
FT                 QTHQQHCVLLQEVQQKQKQTASELKKQSSSSQPAQITSESATQATHIPRKD
FT                 QPSRSPPKDKRNKNAQSNKLNDQHTNSTWSTRIRSRSNKRSSQASPSEADP
FT                 SLRGAKTFVAQACDNDSGPHMQS"
FT   CDS           1800..6725
FT                 /product="I_Ele36_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDQDSLTNNTVYNDENSATNMAVNMETQQDPPPNDIF
FT                 DRNSTMNNYYDNYNNVLNEELESSAITDPISVNRSRRPRHTMLTPLRNVSR
FT                 DNRPDYLREVVNVACQNMQASTSSNYQANPCCRLPSTFPDASRSIPEIDLH
FT                 NRSKSQNPTEYFDVRIXNPVLFHCDAPLHDNVDDEEMQHPGISYQMPQVNE
FT                 RSCRPRYTMLTPLRNVSRDNRPDYLREVVNVACLNMQASTSRNYQSNPCCR
FT                 LPSTFPDASSSIPEIDLHNRRINPALSHDDASSHDNVDNEEMQPRSINFNN
FT                 SENFSCIGPFSSDDTTNSDQRCIINNRSYGPRHTMLTPLRNVSRDISPDYL
FT                 REVVNVAGLNMQASTSFNHRSNPCCRVSSNFPDTPSSTDIGLHLQNTVEMD
FT                 FQQAQNNDFVPVLDTVSPSEPPTNNRRDLSSSSHANSSSTNNQTRCPRIAV
FT                 QWNINGLYNNLTDLQILTQCNPPLILALQELHRHTPSALNNLLRGEYNWLS
FT                 KCGSTRYQNVALAIHRSVAYDTINLNTSLTAVAATVYVPFRLTVVSIYLQH
FT                 SGIENLESSLIHLIDQLEGPLLIMGDMNSHHYAWGSKKTDRRGEAILRVAE
FT                 DKNLIVMNDGTPTFIRGDQQSAIDVTMASTSILEKLRWKVHCDSMGSDHFP
FT                 IEIYSSDAQIHTKRRPRWKFDEANWDGFEEAVLSCMEPAKQYSIEDLTDII
FT                 LLAAKSNIPRTGQFPGKRSVHWWNAETKAAVKVRRKALRAFKRLPVDHPNK
FT                 QQAMENLRIQRSNCRRIVKEAKIKSWEEFLNGINSTHTTTEIWRRVNAISG
FT                 KRRTNGLCIRNDGEVTRDPVKVANTLAKYFEELSSRAAYSDSFASKNPATA
FT                 LSNVTIPEDPEESEYNRLFCIEELYYALEASNGKSCGLDEVGYPMIKRLPY
FT                 RTKIALLDAINKVWTTGTIPEPWSRSLVVPIPKNSAASTDAKNYRPISLTS
FT                 CVCKIMERMVNRRLTTYLTENQKLDNRQXAFQRGRGTGTYHAVLGQVLDDA
FT                 LKANLHVDFAALDLSKAYNRVWTPGVLQQLIKWGITGNMAKFIKGFLSNRT
FT                 FQVIVGNDKSEVMKEETGVPQGSVLAVSLFLVAMNSVFDRLPKGIFVFVYA
FT                 DDVLLVAVGAHPRALRRKLLAGVRSVAKWADNVGFRMAPEKCAITHCCNHP
FT                 HHPWRLPLTVGNMDIPYKKVLRVLGVTIDRKLTFSVHFASIKKESENRMRL
FT                 IRAISSRHQTSNRRTILQISNALITSRLLYGIEITCRASEVLINTLAPTYN
FT                 RFVRFASGLLPSSPTLASXNEAGVLPFEFIVAKSVADRAINFIEKTYGGNE
FT                 EVFLLTEAENLLQKYANETLPPIAGLHRVGDRRWDTTAPRIDWEMKQHVRA
FT                 KDPPWKVSSYFNALLQRKYKNHKHIYTDGSRANGEVGIGVYSRSSKVAARL
FT                 PNCCSIFSAEAAAILLALRNVREEPVVIFTDSASVLSALDSGKSSHPWVQE
FT                 IEERTTAATTLCWVPGHCGVHGNEEADHLASTGRTMNQRIMPSPGVDIKRK
FT                 LKEHLILAWTRKWHTERNLFLRKIRDSTEKWNDRLNQKEQRIISRLRVGHT
FT                 RLTHPHYFSNEQQPRCEICSVRLTVEHILAQCPQYQPGRDALELKYSIRDI
FT                 LSNDREEEEKLLLFLKQIGLYDKI"
XX
SQ   Sequence 6805 BP; 2180 A; 1560 C; 1448 G; 1612 T; 5 other;
     ctcagttttt aatcgggtta ccggttgtta cataaaacgc taatagagct cttatacaat        60
     ttcgtttttt gacgccgtta aagaagcttt aaaataccca aaaggacata ggcaattcga       120
     agtgtgctaa tattcgacgc gtgagtgaaa tttagcaaaa tattgccgta tattttacaa       180
     aatacgtggt aaaatataat caacacctcg tgatagtgtg cctttgttga gaacgaagta       240
     aagcaaacat ccataccgtg cattgtgttg ttgcttaccc gatcaaaact tttgttttga       300
     cgaccgactg tgtgcttcgg tctaacagtg attaatacca aaaagcggaa tagtgcgttt       360
     gaattaagct cggccggatg gccgaaatca cctctccccc atctggggga aatgtggatg       420
     acccattggt gcaagctcac ggaagagtgc caaattggtt ccgtagtagt gacgatatgg       480
     gccagaattt ggtacttgtg atgcgcgtta agccgaaacc aaacgaccta gcagctacaa       540
     gtgatgtgcg aactgaaaac aagctaccga attcgtttat tattggcaaa ggagttgaaa       600
     ctggtaatcg gactgaaaga agcgagagct gtggaggcga tacgtgaagg acggggtgca       660
     cgttgtctgc tgagaacaaa ctctttatcg acataccaga agctccaaaa aatcgttaga       720
     ttacctgatg gaactgatgt cgaggttttt ccacatgcaa cgctaaacac aattcaaggc       780
     attgcctatc accctgacac tgtggacgtt gatgaagaat ctgcgctcga ctttctcagc       840
     tcccaaggcg tcaaacatgt caggagaatc aagaaacgtt ttggaaaaga ttttcgcaac       900
     accccgctca ctattctcac cttccatgga acagttctac cagaatatgt atattttggc       960
     ttaatgagag ttcaaattcg gaaatattat ccgaatccaa tggtctgttt taactgtgga      1020
     aactttatgc acacgaagaa aaactgtaca caagacaaga tttgcttgaa ctgttcacaa      1080
     gctcatgaca tggtggaagg cgttgcatgt cctaatgcgc cgttctgcaa aaactgccgt      1140
     ggaagtcact cttgtgtatc gaaagaatgc ccagtgtacg cagaggagga aaaaataatc      1200
     aaacttcgaa ttgaccaagg aattacattc ggcgaggctc gcaagcaaat taaggagcaa      1260
     aaaacgcaga caacatacgc aagctgtgtg caacaccgaa tgtcggctga tgaattagga      1320
     aaggatgaaa taatacaagc gctcagagca gaacttcaaa ccgccagatc tgaattcaat      1380
     caattgaagg aattgtacaa aaaatcaatc catcaattac aaacccacca gcaacattgt      1440
     gttctactcc aagaagtaca gcagaaacaa aaacaaaccg cgtctgaact caaaaaacag      1500
     tcttcatcca gtcaaccagc ccaaatcaca agtgaatcag ctacccaggc aacccacatt      1560
     cccaggaaag atcaaccgtc gaggtcacca ccgaaggaca aaaggaacaa aaatgctcaa      1620
     agcaataaac taaacgatca acatacgaat tcaacatggt caaccagaat ccggagccgc      1680
     agcaacaaac gatcgagtca agcgtcacct tcagaagctg accctagcct cagaggtgcg      1740
     aaaacgtttg tcgctcaggc atgtgacaac gacagtggac cccatatgca atcctaatta      1800
     tggaccaaga ttcattaacg aacaacacag tctataacga tgaaaactct gctacgaaca      1860
     tggccgtgaa catggaaact caacaagatc ccccccctaa cgatattttt gaccgcaact      1920
     caacaatgaa taactactat gacaactata acaacgtgct caacgaagaa ttggaaagct      1980
     cagcaattac agatccaata tccgtcaaca ggtcgcgtag accaaggcat accatgttga      2040
     cccctctgcg gaacgtctca agggacaatc gccctgatta tctccgtgag gtggtcaatg      2100
     tggcttgcca aaacatgcag gcaagtacta gctccaatta tcaagcaaac ccatgctgtc      2160
     gactcccttc aaccttccca gatgcatcgc gtagtatccc cgagatcgat ttgcacaata      2220
     gatcgaaatc acagaatcca accgaatatt ttgacgtccg gattkttaat ccggtcttat      2280
     tccactgcga tgctcctttg cacgacaacg tggacgacga agagatgcaa catcctggca      2340
     tcagctacca gatgccgcaa gtcaacgaaa ggtcgtgtag accaaggtac accatgttga      2400
     cccctctgcg gaacgtctca agggacaatc gccctgatta tctccgtgag gtggtcaatg      2460
     tggcttgcct aaacatgcag gcaagtacta gccgtaatta tcaatcgaac ccttgctgtc      2520
     ggcttccctc aacgttccca gatgcatcga gtagtatccc cgagattgat ctgcacaata      2580
     ggagaattaa ccccgccctt tctcacgacg atgcttcttc acatgacaac gtagacaatg      2640
     aagagatgca accacgtagt atcaacttta acaacagcga aaacttctca tgcattggcc      2700
     ccttttcatc cgatgacacc accaattcag accaaaggtg cattatcaac aacaggtcgt      2760
     atggaccaag gcataccatg ttgacccctc tgcggaacgt ctcaagggac attagccctg      2820
     attatctccg cgaggtggtt aatgtggctg gcctaaacat gcaggcaagt actagcttca      2880
     atcatcgatc gaatccttgt tgtcgggtat cgtcaaactt cccagataca ccgagttcaa      2940
     cagatatcgg acttcacctt cagaacacgg tcgaaatgga ctttcaacag gcacaaaaca      3000
     acgactttgt tccagtgctc gacacggtgt cccccagtga accgccaacc aacaaccgta      3060
     gagacctttc ttcatcaagc cacgcaaact catcatccac taataatcaa actagatgtc      3120
     ctcgaattgc tgtacagtgg aatatcaatg gtctttacaa caatttaaca gacctgcaaa      3180
     tcctcactca atgtaatcca ccgctgatac tagcattgca agaacttcac cgccacacwc      3240
     cgtccgcatt aaataatctc ttaagagggg aatataactg gttaagtaaa tgcggatcaa      3300
     ccagatacca aaatgtcgct ttggccattc atcgttcagt agcctacgat acaatcaatc      3360
     tcaatacatc attgacagca gtagcggcca cggtgtacgt cccttttcgc ctcaccgtgg      3420
     tgtcaattta ccttcaacat tcaggcatag aaaacctgga aagctcattg atacatctta      3480
     tcgatcaatt agaaggaccc ctcctcatta tgggtgacat gaatagtcat cattacgcat      3540
     ggggatcgaa aaaaacagat aggcgaggag aagcaatact acgcgtggcc gaagacaaaa      3600
     accttatagt aatgaacgac ggaacaccga cattcatcag aggtgatcag caatcagcta      3660
     tcgacgtaac aatggcctcc acctctatcc tcgaaaaact aagatggaaa gtacattgtg      3720
     attcgatggg gagcgaccac tttcccattg aaatctacag tagtgatgcg cagatacaca      3780
     cgaaacgacg gccgagatgg aaattcgatg aagctaactg ggatggcttt gaggaagctg      3840
     tgctatcttg catggaacca gctaagcagt acagcataga agacctgacg gacattatac      3900
     tactagcagc aaaatcaaat ataccacgca ccgggcaatt tcctgggaag agatcagttc      3960
     actggtggaa tgctgaaacc aaggccgcag tgaaagtacg acgaaaggcg ttgagagcgt      4020
     ttaaacgcct cccagtcgat cacccgaata agcaacaagc catggagaat ttgaggattc      4080
     agcgaagtaa ttgccgaagg atcgtaaaag aggcaaaaat aaaatcatgg gaagagttcc      4140
     tcaacggtat taattccacc cacacgacaa ccgaaatctg gcgcagggta aacgccatca      4200
     gtgggaaacg gcgaacaaac ggactatgta ttcggaacga tggggaagtt actcgtgatc      4260
     cagttaaggt ggcaaatacc ttggctaagt acttcgaaga attatcatcg agagctgcct      4320
     acagtgactc ttttgcttca aaaaatccag caactgcact ttcaaatgtg accatcccag      4380
     aggatccaga agagtctgaa tataatcgac tattctgtat agaagagctg tactacgcat      4440
     tagaagcaag taatggtaaa tcatgtggac tagacgaggt aggctatccc atgattaaaa      4500
     gattaccata taggacgaaa attgctctgt tagacgccat caataaggtt tggaccacag      4560
     gcacaattcc tgaaccatgg agcagaagct tagtagttcc aattcccaag aacagtgcag      4620
     catccacaga tgccaaaaac tacagaccaa tctctctcac aagttgtgtc tgtaaaatta      4680
     tggaaagaat ggtgaatcgg cgactcacaa cttacttaac cgaaaatcag aaactcgata      4740
     accgtcaawa tgccttccag cgcggacgtg gaaccggtac gtaccatgca gttcttggcc      4800
     aagtattaga tgatgcactc aaagcaaatc ttcatgtaga cttcgcagct ttagatttgt      4860
     ctaaggctta taatagagtg tggactccag gggtattaca acaactcatt aaatggggta      4920
     tcactggcaa catggcaaaa ttcatcaaag gtttcctttc aaacagaact ttccaggtga      4980
     ttgttggaaa tgataaatcg gaggtcatga aagaagagac tggtgtacct cagggatcgg      5040
     tgttggcagt atcccttttc ttggtagcta tgaatagtgt ttttgatcgg ctaccgaaag      5100
     gaatatttgt gtttgtatat gcagacgatg tactcttggt agctgttggc gcacacccaa      5160
     gagccttgag aagaaaacta ctggcaggag tacgctctgt tgcaaaatgg gcagataacg      5220
     ttggctttcg gatggcaccg gaaaaatgcg ctattaccca ttgttgtaac catccacatc      5280
     acccgtggag attgccactg accgttggga acatggatat accgtataaa aaagtcttac      5340
     gtgttcttgg tgtaacgata gacaggaaac ttactttctc ggtacatttt gcaagcatca      5400
     aaaaggagtc cgaaaaccga atgcgtctaa ttcgagcaat tagcagtcga catcaaactt      5460
     caaatagaag aacgatcttg caaatttcca atgccctcat aacaagtcgt ttactctatg      5520
     gaattgaaat aacatgccgt gcttccgaag ttctcatcaa tactctagca cccacttaca      5580
     accgctttgt caggttcgcc tctggattac tcccaagttc tccaacattg gcttcatkta      5640
     acgaagctgg tgtactcccg tttgaattca ttgttgcaaa atcggtggca gatagagcaa      5700
     ttaacttcat tgaaaaaact tacggaggca acgaggaggt cttcctcctg acagaggcag      5760
     agaaccttct tcagaaatac gccaacgaaa cactcccacc gatagcaggg ctccatcgag      5820
     tgggagacag acgttgggat acaactgctc caagaataga ttgggaaatg aaacagcatg      5880
     ttagagctaa agacccacct tggaaagtct cttcgtattt caacgcgctg ttacaaagga      5940
     aatataagaa ccacaaacat atctatacgg atggttctcg tgctaatggt gaagtaggta      6000
     taggagtgta cagtcgttca tcaaaggtag cagccagatt gcctaactgc tgctctatat      6060
     tctctgctga agcagctgct atacttttag ckcttagaaa cgtacgagag gaaccggtag      6120
     taatctttac tgattccgct agtgttctgt cagccctaga tagtgggaaa tctagtcacc      6180
     cctgggtaca agaaatcgaa gagagaacaa ccgcagctac aactctatgt tgggtaccag      6240
     ggcactgtgg ggtgcatggt aacgaagaag cagatcatct tgcgtcaaca ggaagaacga      6300
     tgaaccaaag aatcatgcct tccccgggag ttgacattaa aagaaaactg aaggagcacc      6360
     tgattttggc gtggacaaga aaatggcata cggaacgcaa cctgtttcta cgtaaaataa      6420
     gggattcgac cgaaaaatgg aatgacagat tgaatcaaaa ggaacaacga attatttcgc      6480
     gtctacgagt tggtcacacc cgtttgaccc atcctcacta cttctccaat gaacagcaac      6540
     cacgatgcga aatatgctca gtacgtctta cggtggaaca tatactggct caatgtcctc      6600
     aataccaacc aggcagagat gctttagagc tgaagtactc aattcgggat atcttaagca      6660
     acgatcgaga agaagaagag aaattgttac tgtttctaaa acaaattgga ttgtatgaca      6720
     aaatttgatt ttctcttttt tttttgcaga ggtgaaccga ctttgaagtt gaaaacctct      6780
     ttaataaaga taataataat aataa                                            6805
//
ID   I_Ele37     repbase;    DNA;    INV; 6621 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele37.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6621
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6621
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 18 sequences with >91% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           305..1963
FT                 /product="I_Ele37_1p"
FT                 /translation="MALANGFPPLLGDPGGPGGGGGGTGPSNKINGEYTGR
FT                 LLPSFMDHAGTSGELRFLKMEAVSGSLPQDPFLLRLSVEKFINGPIDGAYK
FT                 ENKGIAYVLKVRSKAQADSLRRMTKLADGTSIRINEHDTLNQRKCVVSNYD
FT                 TIGLTEEYLQSQLSAQGVKEVRRIKRKNAIGELENTPTVILTICGTVIPPH
FT                 IDFGWNRCKTRNFYPAPMLCFRCWEYGHTGKRCREPHRICGKCSKVHPEDR
FT                 IVTTAPDLTEEPTVSAGSSNPPSAIERNRTPCLEAAFCKICQSDDHSVSSR
FT                 KCPAYVRECEIQHIRVDMGISYPQARREYESRQSASSCSTAYTGVVNASKD
FT                 KEIADLTAKVQKLQSDTKMKERRIEEMERQLQNRGVGDRLETVQQNGTIED
FT                 LIRKVTALTATVEKLEEALVKKDETIKRQKKEIALFRAMETKSECSNVTVP
FT                 ETQSSTETESIIPGTVEQETTEQVAEWVKCNSRKQPEKNCQKSSKNKDNSP
FT                 AVNSMTDLHGTRNLNTPHALNLPKRNREEESSGDSLSIKAPAIKRSIRARK
FT                 MKGNQK"
FT   CDS           1950..6212
FT                 /product="I_Ele37_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="RETKSNPILRNAQSLYEQSNLKQPLDSPHKIFTSDEE
FT                 DECSTSKEWTEQYETQPDKNVATFEKERHHDSNTNTNNQLLPGQTNNSTGE
FT                 TMPRRYPLRTRRKPLRLRYPIRETKIPKYFPPLGEEVSNAQRYDVLHKTRY
FT                 GPSASIIPGTSRLTHKKTNAPSLLPAADPGWNSFPDETVCYTQITEHAPLQ
FT                 VSDCCSRDALEGHSSRISSGSSSHSRTVLAIQWNINGFFNNLADLELLVNN
FT                 MKPVVLALQEIHKASVSSMNNKLRKGYNWIAKSGNNIYHSVALGISSELKF
FT                 TEIPLDTDLPIVAARLDWPFSASVVSFYLPNGNIPNLENQLRNVIQSIPTP
FT                 IIMLGDCNGHHQAWGSHDSNARGSLVAELASSCELSILNDGSPTFIRGLAE
FT                 TAIDISLISTGILNRIHWTAGTDPLGSDHVPITLYLDTATPETSRRPRWLY
FT                 EKANWAEFQSSFEAAIENSKPNSINELTDLIIEVATATIPKTSSTPGRRAL
FT                 PWWSDEVKAVVKARRKALRAFKRLPSSHPEKEAASQRYRETRNQCRQTIRE
FT                 SKEKSWSEFLNGINEHQSTTELWSRVNRIHGKRRVKGMALKTNGIMTRDPA
FT                 LIVDALADHFYELSSIKRYPETFLKKHPSPDKAIKNFVVPPGMGQCFNLPF
FT                 TMTELDFALQKASGKSAGPDEIGYPMLKHLPTEGRIVLLNAINKEWIDGTL
FT                 PDGWRHGFVVPLPKTCGPANDVKSYRPIVLTSCTAKLMERMVNRRLVEYLE
FT                 TNRKLDRRQHAFRPGQGTGTYLATLGQVLNDALSRNEHIEIASLDLSKAYN
FT                 RAWTPGILRQLAQWGITGNMLTFIKNFLNERTFQVMVGNSKSKLVAEETGV
FT                 PQGSVLAVTLFLVAINGVFKVLPKGIYIFVYADDILLVVCGKYPKATRRKL
FT                 QSATNAIGKWADLSGFDIASEKCARLHICSSNHTPPRKPITIHGKPIPTKK
FT                 TLKILGVTLDRNFCFKEHFETTKKKCKNRLNLLKVITNRCTKNDRMTRIRV
FT                 ADAIICSRLTYGIEITCRASDRLIQQLAPVYNNAIRTIAGLLPSTPADAAV
FT                 VESGVLPFRYKITIAICNRAVSFLEHTKDDGSVAFIASEANRILDSVAGVT
FT                 LPPVVGLHRNGPRSWQANLPKIDKRLKNHFRKGNNPIEARALFFEQLRSRY
FT                 SNTEIRYSDGSKAVGKLGIGVCGTGLREHRSLADQCSVFSAEAAALFVAAS
FT                 KPSDRPVLIATDSASTLLALESPRTKHPWIQATQVLIDDETKNVTFTWVPS
FT                 HIGIPGNEDADKLANMGRSSRRLTRKVPGSDAKLWVKNTVQDAWEREWRTN
FT                 RLLFIRKVKGTTRIWDDRPDRREQVVLSRLRTGHTRLSHDYTGGLPFRRTC
FT                 ETCAVHNTVEHIICECPTLEQLRTRYQLGSIRNALNNDKAGETSLICFLKD
FT                 AGLFSQI"
XX
SQ   Sequence 6621 BP; 2066 A; 1547 C; 1477 G; 1530 T; 1 other;
     cagtcgacag ctatcgttcg tagcgtacgg ttgtgctttt caacctgcct gaatagagtg        60
     cgagtctatt gtttcaatac agtagtgata tagtagagcg gtgcctgtag gtaacaattg       120
     tgactcggtg ctccccaaac tacggggcca attcatttca tcgttgcgaa aagtktgttg       180
     ggactagcgg ggcccaaagc gtaactgcct gctgtggaag tgcaagtcat catatcatca       240
     ccaacgatca tccgaagtgt gcaaatagga tacaccacat aaaaaggtca tcccgttcgc       300
     tagcatggcg ctagcgaacg gtttcccacc ccttctgggg gatccagggg gacctggagg       360
     aggaggagga ggtacaggtc catcaaataa aatcaatggt gagtacactg gacgtttact       420
     accaagcttt atggaccatg ctggaacgtc gggagagtta cggttcttga agatggaggc       480
     ggtttccggc tcgctcccac aggatccgtt tcttttgcgt ctatccgtgg agaaatttat       540
     caatggacca atcgacggcg cgtacaagga gaacaaagga atagcatatg tcctcaaggt       600
     ccggagcaag gcgcaggctg acagcttgcg tcgcatgacg aaattggccg acggaacatc       660
     gattcgaatc aacgaacacg atactttgaa ccagcgaaaa tgcgtggtgt ctaactacga       720
     caccattggt cttacggagg agtacttgca aagtcaatta tctgcgcaag gtgttaagga       780
     agtccgcagg atcaaacgca aaaacgcaat tggggagctg gaaaacacac caacggtgat       840
     tctcacaata tgtggtacgg taatcccccc gcacattgac ttcggttgga atcgatgtaa       900
     aacgcgcaat ttttaccctg ctcccatgct ttgtttccgt tgctgggagt acgggcatac       960
     gggcaagcga tgtcgagagc ctcatcgcat atgtgggaaa tgcagcaagg tgcatccgga      1020
     ggacaggatc gtaaccacag ctccagattt aactgaagaa ccaacagtct cagctggcag      1080
     tagtaacccg ccatccgcta ttgaacgcaa tcgaacgcca tgtcttgaag ctgctttctg      1140
     caagatctgc cagagcgacg atcattcagt gtcgagtaga aaatgccccg cgtacgttag      1200
     agaatgcgaa attcagcaca ttcgtgtgga catgggcata tcatatcccc aggcccgccg      1260
     tgaatatgaa tcccgtcaat ctgctagtag ttgcagtacc gcatataccg gagtagttaa      1320
     tgccagtaaa gacaaggaaa ttgccgattt aacagcgaag gtccagaaac tgcagtctga      1380
     cacaaagatg aaagagcgac gaatagaaga gatggaacgc caactccaaa acagaggtgt      1440
     cggagataga ctggagacag tgcagcaaaa cggaacaatt gaagatttga tccggaaagt      1500
     gacagctctt acggccaccg tggagaaact agaggaagca ttagtgaaaa aggacgagac      1560
     tataaaaagg cagaagaaag aaatagcgct attccgagcc atggaaacta agtctgaatg      1620
     ctctaacgtc accgttcctg aaacacagtc gtcaacggag acagagtcga ttattccagg      1680
     taccgtcgaa caagaaacaa ccgaacaagt tgccgaatgg gtcaaatgta actctagaaa      1740
     acagccagaa aaaaactgcc aaaaatcctc gaaaaataaa gacaacagcc ccgctgtgaa      1800
     ttcgatgacg gacttgcatg gaacgcggaa tttgaataca ccacacgcct taaacctccc      1860
     aaagagaaat cgcgaagaag aatctagtgg agactcatta tccatcaaag ccccagccat      1920
     caagcgaagt attagagctc gcaagatgaa gggaaaccaa aagtaatccg atccttcgaa      1980
     acgctcagtc gctctatgaa cagtccaacc ttaaacagcc tcttgatagt cctcataaaa      2040
     tcttcacctc cgacgaagaa gacgaatgct caacaagcaa agaatggact gagcaatacg      2100
     agacacaacc tgacaaaaac gttgcgactt ttgaaaaaga aagacaccac gacagcaata      2160
     ctaatacgaa caatcagcta cttcccggcc aaacgaacaa cagcactggt gaaacaatgc      2220
     caagacgata cccactgcgt actcgtcgta agcccctgcg tctcagatac cccatccgtg      2280
     aaacaaaaat tcctaaatac tttccccccc ttggtgaaga agtttccaat gcccagcgat      2340
     atgatgtact acataagacc cgctatggac catctgcgtc tattatacca ggtacgtcta      2400
     gacttactca caaaaaaacc aatgccccat cgcttttgcc agctgcagat cccggatgga      2460
     attcttttcc tgacgagact gtatgctata cccagattac agaacatgct cctttgcaag      2520
     tatcagactg ctgttcaagg gatgcgttgg aaggacacag tagtagaatc tcatccggct      2580
     caagctcgca tagtcgaaca gtcttagcaa tacaatggaa tattaacggg tttttcaata      2640
     acttggctga cttagaactg ctagttaata acatgaagcc tgttgtccta gccctacaag      2700
     aaatacacaa agcgtctgta tcttcaatga ataataagct aaggaaggga tacaactgga      2760
     tagcaaaatc cggtaacaat atataccatt cggtcgcgct gggtatttcg tccgaactca      2820
     aatttactga aatcccctta gacaccgatc ttcctattgt tgcagcaaga ctagattggc      2880
     ccttttcggc atcggtagta tccttttacc taccgaatgg aaatattcca aatctagaaa      2940
     atcagctaag aaatgtaata caatcaatcc ctacaccgat cattatgcta ggtgattgca      3000
     atgggcatca tcaagcatgg ggaagtcatg attccaatgc tcgtggttca cttgtagctg      3060
     aactagccag ttcatgcgaa ctttcgattc taaatgacgg ttcacccacc tttatcagag      3120
     gtctagctga gactgctata gatatctctc ttatttcgac tggaatacta aaccgaattc      3180
     attggacggc aggcactgat ccgttgggaa gcgaccatgt acccataacc ttgtatctgg      3240
     acacagcaac tccagaaacg tctcgtcgac ctagatggtt atatgaaaag gccaattggg      3300
     ctgaatttca atcttctttt gaagctgcga ttgaaaattc caagccaaat tcgataaatg      3360
     agcttactga tttgattatt gaagtcgcta cagctacaat tcctaagacg agtagtacac      3420
     ctggtcgccg agcccttcct tggtggtcgg acgaagtgaa ggcggtggtg aaagctcgta      3480
     gaaaagctct tcgagctttt aagaggctgc cttctagtca ccctgaaaaa gaagcagcaa      3540
     gccagcgata ccgtgaaacc agaaatcaat gtcgacaaac aattagggaa tcaaaggaaa      3600
     aatcgtggtc cgagttcttg aacggtatta acgaacatca atccaccaca gaactgtgga      3660
     gtcgcgtgaa tagaatccat gggaaaagac gggtgaaggg catggctcta aaaacaaatg      3720
     gaataatgac cagggatccg gcattgattg tagacgcgct tgctgaccat ttttacgaac      3780
     tttcttccat taaaagatat cctgaaacat ttctgaaaaa acatccttca cctgataagg      3840
     cgataaagaa ttttgtggtt ccacctggaa tgggtcaatg ttttaacctt cctttcacaa      3900
     tgacggaatt ggattttgcc ctccaaaagg catcagggaa gtcggcgggt cccgatgaaa      3960
     taggctaccc gatgcttaaa catcttccaa cagaaggaag aatagtgtta ctgaatgcaa      4020
     taaataaaga gtggatagac ggtacccttc ccgatggctg gaggcatggt tttgtggtgc      4080
     ctttacccaa aacctgtggt ccagcaaatg acgtcaaaag ctaccgacca attgtgctca      4140
     cgagttgcac tgcaaaactt atggaacgaa tggttaacag gcgactcgtt gaatatttag      4200
     aaaccaatcg taagcttgac cgaagacaac atgcattcag accaggccaa ggtacaggaa      4260
     catacctggc tacgcttgga caagtcctca acgatgctct atcacggaac gaacatatag      4320
     aaatcgcatc attagattta tcaaaggctt acaatcgagc ctggactcca ggcatactac      4380
     gacagctagc tcagtggggt atcacgggaa acatgctgac attcataaaa aatttcctga      4440
     atgaacgtac cttccaggta atggtgggca atagtaaatc aaaattagta gcagaggaaa      4500
     ccggtgtacc acaaggctct gttttggcgg taaccctgtt tcttgtggca ataaatgggg      4560
     ttttcaaagt tctccccaaa ggtatttata tattcgtcta tgcggacgat attcttttgg      4620
     tagtttgtgg aaaataccca aaagctacta ggagaaaact tcaatccgca acaaacgcaa      4680
     tcggtaaatg ggctgacctc tctggttttg atattgcatc tgaaaaatgc gccagacttc      4740
     atatttgctc cagcaaccac acccctcccc gaaaaccaat cacaatccac gggaaaccaa      4800
     tccccacgaa gaaaacattg aaaatccttg gagtaacact agatcgtaac ttctgcttca      4860
     aagaacattt cgaaacaacc aagaaaaaat gcaaaaatcg actaaatctc ctaaaggtta      4920
     ttaccaacag atgtaccaaa aacgacagaa tgacccgaat aagagttgcg gacgcgatta      4980
     tatgcagtcg gctcacctac ggcatagaaa taacctgccg ggcttcggac cgtctcatcc      5040
     aacaactagc gccagtatat aacaatgcca taagaactat agcggggttg ctgccatcaa      5100
     cgccggccga tgcggccgtt gtggaatccg gtgtccttcc cttcagatat aaaataacca      5160
     ttgccatctg caatagggca gttagttttc tggaacacac caaagatgac ggatcggtgg      5220
     ctttcattgc cagtgaagcc aaccgaatcc tggattctgt ggccggtgtc acactccccc      5280
     cggtggtagg actccaccgc aacggaccaa ggagttggca ggccaatctt cctaaaattg      5340
     acaaaagatt gaagaatcat ttccgcaagg gtaataaccc aatcgaggca cgagcgctgt      5400
     tttttgaaca actgagaagc cgatactcaa atactgaaat cagatattct gatggctcta      5460
     aggctgtggg taaattagga attggtgtgt gtggcacagg actgcgcgaa caccgcagtc      5520
     tggccgatca atgttccgta ttttcagccg aagctgcagc tttgtttgta gcagcgtcca      5580
     aaccgagtga tagaccggtt ctgattgcca ctgactcggc tagtactctg cttgcactgg      5640
     aatctcctag aaccaaacac ccatggattc aggcaaccca agtacttatc gatgacgaaa      5700
     ctaagaatgt aacttttact tgggttccga gtcacatcgg catacccggt aacgaagatg      5760
     cggacaaact agcaaatatg gggagatcga gccgtcgtct cacacgcaaa gttcctggat      5820
     cagacgcaaa gctttgggta aaaaacaccg ttcaagacgc atgggaaaga gagtggagaa      5880
     cgaaccgcct tcttttcatc cgaaaagtta agggaacaac cagaatctgg gacgacagac      5940
     cggacagaag ggaacaggtt gtgctatctc gactccgcac agggcatacg aggttatcac      6000
     acgactacac tggaggcctt ccttttcggc gaacctgcga gacatgcgcg gttcataaca      6060
     cggtggaaca tataatctgc gaatgtccca ccctggaaca actcagaacg cgctaccaac      6120
     taggtagcat ccgaaatgct ctcaacaacg ataaggcagg tgagaccagc ttaatatgtt      6180
     ttttaaaaga tgcaggctta ttttcacaaa tttaatccca aaacaaacag caacacacct      6240
     caccggatgt gggttccatt tggaacctac atctggcagc cacgaaacga accaacaacc      6300
     agcgaaaaca gacctatggc atgaaaatgg acagcgataa ggaaccaaag atacccacga      6360
     cacagatgag gatttatttt agtttaacgc cagataaatc aagttatgac tgtctctttc      6420
     tatgcgaagg tccttctgat cttcttatct ctatttgtac cattatataa tatgtttatt      6480
     tgattcaaac aaactctgta catacacatt attcgcgagg ttgaatcctt caggttcctc      6540
     ctcctttttt atatttttgt cgaggtgaac cagccacggg ctgaaagcct cgttaataaa      6600
     gacaataata ataataataa t                                                6621
//
ID   I_Ele39     repbase;    DNA;    INV; 6583 BP.
XX
AC   .
XX
DT   22-OCT-2010 (Rel. 15.10, Created)
DT   22-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele39.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6583
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6583
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (22-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           382..1722
FT                 /product="I_Ele39_1p"
FT                 /translation="MASSATAPRGGIFEQHSRSNVPQWMLGSDDIGQVMVF
FT                 VLRRKLDKSNVSENERNQNAALPNPFVVGASIRQVIGVKEASSIETTREGR
FT                 GSRYLLRTSSRSIAEKLTKITKLSDGSDIEIIAHPTLNTVQGVVFEPDTIN
FT                 VDEEKIQKELESQGVHTVRRIKKRINGKLINTPLLVLSISGTILPEYVYFG
FT                 LLRIPLRQYYPSPMMCFHCGHYGHSRKFCQQTGICLRCSTSHDILDGEQCE
FT                 NDPKCLHCKGGHSVSSRDCPKFKEEEKIIRLKIDRRISHAEAKRICSLESR
FT                 TEGFKNVVQDQIQQELAMKDQLIASLQQQVATLVKEIESLKKILKPKPKDL
FT                 PSATQDEQHATLQSAMDSPVVTPASSQSSLLKPNRLSRKDKESTVPPGKPP
FT                 GSRCSSRPSYDVQTRSRSGKRHYDISPTDTDKHKGKRISVPASTSNKPIDI
FT                 DE"
FT   CDS           1725..6497
FT                 /product="I_Ele39_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MPRKTQRNTLTTDFSDPATIMDKSITFPNYSHELRLH
FT                 PTPATGKQSLKRFEDXESVVLSSLPEEEARLQSKVIQDVFLQPVEHQAFSP
FT                 AVMYNKPKDLPHSAKINSTAYDQFRHISVIPSTSKTQIFGYYESPSARPPT
FT                 STLTGDVPVQPDEPPAAVDVDHQTLPASITTIVSYDQSDHIQSFNNTAQPK
FT                 PNGMNHFEIDRKTFPDCSHELRLHPMPATHKLSLKRFEDDESVAFSSLHEE
FT                 EARLQSKVIQDVSIQPVEHQALSSTMRINTLKVLPHSAKINSTAYDHFRNI
FT                 SVKPSTSKTQIFGCYESPSARPPTSTLTGDVPVHPDEPPAAVDVDHQTLPA
FT                 SINSIVPYDLSTHIQSFNNTAQPRVNGLEYPNNSSLDDESLSETRSACSHE
FT                 PEKRMLFFQWNIRGLWCNHTELCHLLLDNPPIVVSLQEMMTKNVNNALRKK
FT                 YTWNSVNRHYSQGAGAAGLGILSEVPHNFIKVNCPIPVCVARLLNPYNITV
FT                 VSIYVPPNSPDSHMLETLNSIKGNTDPPYIIGGDFNAAHEAWGSIKSSSRG
FT                 LKLLSWIVDNNMVSLNNGEPTFISSSHGSTSSIDLTIVSNSIASRLSWTIA
FT                 KDTHGSDHFPIRVYSQERHPTEQHRRRWLYKNANWPTFENSLLDVLQPNKD
FT                 ISIDELNNAIIKSAEASIPRTSGKSIGKTEIWWTDEVQKVVKARRKALRKM
FT                 KRTAPSDPSYESIRKSFQASRAAARKSIVQAKQESWTNFCSSFNPRTPSDV
FT                 LWNNFNRLNGKRKKGVKGLVIDGAFVQDPPIIAERFANYFQQASTTPAISA
FT                 SASNGETMLISSTESNSELDKEFSLDELLRAIDSAKGYSTGKDNIGYPMIR
FT                 HLPISSKYAMLKCFNRIWAEGKFPQQWKEGIVVPVPKPGTTQNTIENYRPI
FT                 TLLSCIGKIYERMINHRLITFLEKHNILHPNQHAFRSGRGTSSYFSDLKEI
FT                 LENAKQSKNHLEFALLDIRKAYDQTWRPHILQQVNRLSVGNCMKSCISNFL
FT                 KDRLFRVCYGSSLSTQKPQDNGVPQGSVLAVTLFLLAMNSVFEAVPKNVRI
FT                 LVYADDIVLVASSKQISTVRHHLANAVSAVNTWAKQVNFSLSATKSCLLHV
FT                 CQRXSHRGSRSLPAIVVDGEAIPEVNSARFLGVWINRRGQFSTHAAKTKQA
FT                 LRNKVNFIRALSPKASRSTLWKISNAVCISKLTYGVELFGDGITALLRPIY
FT                 NELLRISSGALRTSPTLSLATEAGELPFDLRLAELLVRKYCKIIEKTNKNY
FT                 PYFHETVDRILNQLIEHNTPCITKLRRVGRRPWNFPRIRVDWSIKREFKKG
FT                 QNPGIARMLTSNRMDAQYAKHTKIFTDGSKTSNEVGVGVIGPNIYVERSLL
FT                 PQCSIFTAEAAGLLFAARAAPRTPTVILSDSASCLSAIEKGKSTHPFIQEF
FT                 EYVAADKNLVACWIPGHSGITGNEQADNAAERGRSSRLLYRSIPAADAIQW
FT                 IKHQLHAKFQEEWANNSVTFLQRCKPTVEKWIDRENRLEQKTLTRLRIGHT
FT                 KMTKKHLFDNTFSPICDVCNTNLTVEHILISCRKFDLVRDELGLSNNLQII
FT                 LSNTKENESKLLKFIKKCNLSDKI"
XX
SQ   Sequence 6583 BP; 2106 A; 1596 C; 1294 G; 1585 T; 2 other;
     attcgtattc gggatacatt cgtataagag cacgcgcgga ttgctcccgt ttatattttt        60
     gctaattctg ctgttataag ctacaaactc atcgttatac tttatttaag tgaaaccaac       120
     accaaatcac atgccggaga agtgaagttt atgtgatttt tggcctcaac atagtgaaat       180
     aacattaaaa acattgtgtt aatatcacgc gactagagtc gccattgtcg aagtacctac       240
     accgtctcac attcgctata gacaacaacg caataaaaat ccgagtgata ggttgtatcc       300
     acattaggat ctatttcgtt caagtgcagt gtcgttaaac tgaaagctat taagtgttag       360
     tcgccagcta gctacggcct tatggccagt agcgcaaccg cccctcgggg tggcatattc       420
     gaacagcaca gtaggagcaa tgtgcctcaa tggatgctcg gatcagacga tattggtcaa       480
     gttatggtgt ttgttctgcg ccgtaagcta gataaatcga acgttagtga aaatgaacga       540
     aatcaaaacg cagctctgcc aaatcctttc gtcgttggcg catctatccg acaagtaatt       600
     ggtgtgaagg aagctagttc aattgagacg acccgagaag gaaggggttc tcggtattta       660
     ctccggacca gctctagaag catcgccgaa aagctcacga aaattaccaa attatcagat       720
     ggttccgata tcgaaattat tgcccacccc accctcaaca ctgtgcaggg agtagttttc       780
     gaacccgaca ctatcaacgt tgacgaagaa aaaatacaaa aagaactgga atcgcaagga       840
     gtccacacag tacgccggat taagaaacga attaacggga agctcataaa tactccgcta       900
     ctagtcctat cgatcagtgg tactatactg ccggaatatg tctacttcgg tctactccga       960
     attccactcc gacagtacta tccatctcct atgatgtgtt ttcactgcgg tcactatggc      1020
     cactcacgga agttctgtca acaaacagga atctgtctac ggtgctcaac atctcacgac      1080
     attctagatg gagaacagtg cgaaaatgat ccaaagtgtt tacactgcaa gggtggacat      1140
     tcggtgtcat ctcgcgattg cccaaaattt aaggaagagg aaaaaataat cagattgaaa      1200
     atcgatcgtc gcatctcaca cgcagaagct aagcgtattt gcagccttga atcaaggaca      1260
     gaaggtttca aaaatgttgt tcaggatcaa attcaacagg agttggcgat gaaagaccaa      1320
     cttatcgcat cattgcaaca acaagtcgcc actctcgtca aggaaattga gtcgttgaag      1380
     aaaattctga aaccaaaacc caaagatctg ccctccgcta ctcaagatga acaacatgca      1440
     actctacagt ctgcaatgga ttccccggta gtaacgcctg cctcctcgca atctagtttg      1500
     ttgaagccaa accgcttatc ccgcaaagat aaagaatcca ctgttccacc tggaaaacct      1560
     cctggtagcc gctgcagtag tagaccttcc tacgacgtcc aaacccggag cagaagtgga      1620
     aaaaggcatt acgacatttc tccaactgat accgacaaac ataagggtaa acgaatctca      1680
     gtaccggcga gtacaagcaa caaacctatc gacatcgacg aataatgcct cgaaagacac      1740
     aaagaaatac tctgactacc gatttttctg accccgcaac gataatggac aagagcataa      1800
     ccttcccgaa ttactctcac gaactacgac ttcatcccac gccagcaaca ggcaagcaat      1860
     cattgaagcg gtttgaagat gasgaaagtg tagtactctc ttcacttccg gaagaggaag      1920
     cgagactgca aagcaaggtg atccaggacg tctttctcca acctgttgaa caccaagctt      1980
     tcagtccggc cgtgatgtac aacaagccaa aggatctacc acactctgcg aaaatcaaca      2040
     gtacggcata cgaccagttc cggcacatca gcgttatacc ttccaccagc aagacccaaa      2100
     tattcggata ttatgaatcg ccaagtgcga ggcctcccac gtcgaccctg accggagatg      2160
     ttccggttca acccgatgag cctccggcgg cagtcgacgt ggaccaccaa accctaccgg      2220
     caagtatcac tacaatagtt tcttatgacc agtcagacca catccaatct ttcaacaata      2280
     cagctcaacc aaaacctaac ggaatgaacc atttcgagat cgaccgcaaa actttcccgg      2340
     actgctctca cgaactacga cttcatccca tgccagcaac acacaagcta tcattgaagc      2400
     ggttcgaaga tgatgaaagt gtagcattct cttcacttca tgaagaggaa gcgagactgc      2460
     aaagcaaggt gatccaagac gtttctatcc agcctgttga acaccaagct ctcagttcga      2520
     ccatgaggat taacactcta aaagttctac cacactctgc gaaaatcaac agtactgcat      2580
     acgaccattt ccgaaacatc agcgttaaac catccaccag caagacccaa atattcggat      2640
     gttatgaatc gccaagtgcg aggcctccca cgtcgaccct gaccggagat gtcccggttc      2700
     atcccgatga gcctccggcg gcagtcgacg tggaccacca aaccctaccg gcaagtatca      2760
     attcaatagt gccttatgac ctgtcaaccc acatccaatc tttcaacaat acagctcaac      2820
     caagagtcaa cggactggaa tatcccaata attcatccct cgacgacgaa agcctaagtg      2880
     aaacgcgcag tgcatgcagc cacgagccag agaaaaggat gctgttcttc cagtggaaca      2940
     tccgtggttt gtggtgtaac cacaccgaat tgtgccatct tttgctagac aaccctccta      3000
     tagtcgtcag cctacaagag atgatgacta aaaacgtaaa caacgccctt cggaaaaaat      3060
     acacctggaa ttccgtcaat agacattact cccaaggcgc tggtgcagct ggtctcggaa      3120
     tactttccga ggtaccccac aactttataa aagttaattg tccaattcct gtatgcgtag      3180
     ctcggctgtt aaacccatac aacatcacag tcgtctccat ctacgtccca ccaaacagcc      3240
     ctgattccca catgttagaa acactgaaca gcataaaagg caacacggat ccaccctata      3300
     tcatcggtgg agactttaat gctgcccatg aagcttgggg tagtatcaaa tcgtcaagta      3360
     gaggactaaa actcttaagt tggatcgtcg ataacaacat ggtctctctc aacaatggtg      3420
     aacccacctt cattagctcc tctcacggaa gtacatccag tatcgactta acaattgttt      3480
     ctaatagcat cgcaagtaga ctctcctgga caattgccaa agatacgcac ggaagcgacc      3540
     attttcccat tcgagtatat tcacaagaaa ggcaccccac agaacaacac cgtagaaggt      3600
     ggttgtacaa aaatgcaaac tggcctacgt ttgaaaacag cttactcgac gtactgcagc      3660
     cgaataaaga catttccatc gacgaactca acaacgctat cataaaatca gctgaagctt      3720
     ccattcctag aacgtcagga aaatctattg gaaaaactga aatttggtgg accgacgaag      3780
     tacagaaagt ggtcaaggct cgccgtaagg cactacgaaa aatgaaacga actgcaccat      3840
     cggatcccag ttatgaaagc atacggaaat cgttccaggc cagtcgcgct gccgccagaa      3900
     aatcaatagt ccaagcaaaa caggaatcct ggactaattt ctgcagtagt ttcaatccac      3960
     gcaccccatc cgatgttttg tggaacaatt tcaatagact taatggtaaa aggaaaaaag      4020
     gggttaaagg gctcgtcatt gatggggcgt tcgtacaaga tcctcccata attgctgaac      4080
     gttttgccaa ctatttccaa caagcatcta caactcccgc aatctcagct agcgcaagca      4140
     acggagaaac tatgctgata tcttccactg aatcgaattc agagttagat aaagagttct      4200
     cactagacga actcttacga gctatagact ccgctaaagg atattccacc ggtaaagata      4260
     acatcggata tccgatgata cgtcatttac caatttccag caaatatgct atgctgaaat      4320
     gtttcaaccg catttgggct gagggaaagt ttccacaaca atggaaggaa gggatagtag      4380
     ttcctgttcc aaaacctggt accacccaaa ataccatcga aaattatcga cctatcaccc      4440
     tccttagttg cataggaaaa atctatgaac gtatgataaa tcatcggctg atcactttcc      4500
     tggaaaaaca caatattctc catccaaacc aacatgcttt tcgatctggt cgtggaacct      4560
     catcatattt ttccgatcta aaagaaatcc ttgaaaatgc caaacaatcg aaaaatcacc      4620
     tcgaattcgc tttattagat atcaggaagg cctacgacca aacttggcgt ccacatatct      4680
     tgcaacaggt gaaccgtttg agtgttggaa actgcatgaa atcttgtatt tccaattttc      4740
     tgaaagatcg actttttcgt gtttgctatg ggagttcact atcaacccaa aaaccccaag      4800
     acaatggcgt tcctcagggt tcggttcttg ctgtaacgct gtttttgcta gcaatgaatt      4860
     ccgtatttga agcagtaccc aagaacgttc gaattctagt ttatgctgat gatatagttt      4920
     tggtcgcatc ttccaaacaa atctcaacag tacgtcacca cttggcaaat gcagttagcg      4980
     cagttaacac ttgggctaag caagtgaatt tttcactctc ggctaccaaa tcctgcctct      5040
     tacatgtgtg tcagagakca agtcataggg gatcaaggtc gctgccagca atagttgtag      5100
     atggtgaagc tattccggag gttaattctg ctcgcttcct tggagtctgg atcaatcgta      5160
     gaggacaatt ttccacgcat gccgctaaaa ctaaacaagc attacgtaat aaagtaaact      5220
     tcatcagagc tttatcgcct aaggctagca gatcgacact ttggaaaatc tccaatgcag      5280
     tgtgcatatc aaaactcacc tatggtgtag aattgtttgg agatggaatc acggcgctgt      5340
     tacgaccaat ctacaacgaa ctattaagaa tctcttcagg tgctcttcga acctcaccaa      5400
     cccttagtct ggccaccgag gcaggtgaac tcccattcga cctacgtctt gcagaattgt      5460
     tggtacgcaa atattgtaaa atcatcgaaa aaaccaacaa aaactatccg tacttccatg      5520
     aaaccgtaga tcgcatattg aatcaactaa tagaacataa tactccgtgt attactaaac      5580
     tacgacgagt tggacgccgt ccatggaatt ttccccgaat tcgagtcgac tggtctatca      5640
     aaagagagtt taagaaagga cagaatcctg gaattgctag gatgttaaca tcgaaccgca      5700
     tggacgcaca atacgctaaa catacaaaaa tcttcacaga cggctcgaaa acatctaacg      5760
     aggttggtgt aggagtaata ggaccaaata tttatgttga aagaagtctg cttcctcaat      5820
     gtagcatatt cacagctgaa gctgcaggac ttctttttgc agcacgagct gcccccagaa      5880
     cacctaccgt tatcttgtca gattctgcca gttgcttgtc cgccatcgaa aaagggaaat      5940
     ctacccatcc tttcatccag gaattcgaat atgtagcagc tgataaaaat ctggtggcat      6000
     gctggatacc tggccattct ggcatcacag gaaacgaaca ggctgataat gctgctgaga      6060
     ggggtcgctc aagtagactc ctatatcggt ccatacctgc tgccgatgcc atccaatgga      6120
     ttaaacatca acttcatgct aaatttcaag aagagtgggc taacaattca gttacattct      6180
     tgcaacgctg caaaccaaca gtcgagaaat ggatcgacag agagaaccga ttagaacaaa      6240
     aaactctaac aagacttcgt atagggcaca cgaaaatgac caaaaagcat ttgtttgaca      6300
     acaccttttc tccaatttgc gatgtctgta atactaatct tacggttgag cacatactga      6360
     tcagttgtag gaaatttgat ttagttaggg atgagctcgg tctaagtaac aacttgcaaa      6420
     taattctaag caatacaaaa gaaaacgaat caaaattgtt aaaatttatc aaaaaatgta      6480
     atttatctga taagatttaa tccttaataa acagaggtga atgaaccgcg aggtttaaaa      6540
     cctctataat taactcaaaa aaaaaaaaaa aaaaaaaaaa aaa                        6583
//
ID   I_Ele4      repbase;    DNA;    INV; 8314 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-8314
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-8314
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >88% identity, and ~96% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           1010..2698
FT                 /product="I_Ele4_1p"
FT                 /translation="MAASSAGPPTNSWWDGPANDNFGDRVDGSFPGPTLPP
FT                 FMDPEGLHGELHLLRISGVNGPLPNKPFHIRRSVERFVGGKIDGAFPEANK
FT                 SSYALKVRSQRQFNKLLDMNQLLDGTPVLVAEHPTLNSTRFVVSCRDVVDM
FT                 SEQELLEELKEQGVKEVRRITKRKGQARENTPALVLTCRGTIRPETINFGY
FT                 IRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKVATCGTCSGDHPIAENRDCD
FT                 IGDFCKTCNSNEHRISSRSCPRWQYENTIQKVKVDQGISYPAARRXVEQNR
FT                 GSXTFATMASYATKXPXQPRERNEELSAVLAAKDAEIAELRAALATRXAPS
FT                 XTVSSEIETLKXIVXDQARQIQLLTEQVSVFLKAVMPAASXTSPTNXAPTT
FT                 KALTXSSATXXEETGXSEPSATTNXASXTTLNNSPTTSKNGVHEPIVDPEA
FT                 XKDTISAPLSXSVTXNEQHXDKXLDXDPSDSDTASSDRSANIEFFSPHQSK
FT                 NTLSPXTPKPPRTRALLPRGSGSNVDPTKTPGKRPISSISRTETLFQQQKK
FT                 SKIKSAEGHAAVSNKR"
FT   CDS           2695..7797
FT                 /product="I_Ele4_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="KVSPSTLSIFSPPPQRHKPVSHCTDAHHAAAQINPQR
FT                 NIIFLATDRRSAGELEATSEPESPIRLRHHAQNNSPAVSLDSRGANVPDVL
FT                 PLPESLGRLRRLEDDMDEELPLHLLRCPAKTPGSQSPVGAVVSHSGTDGQP
FT                 LALGEDLEEGNQVAKPTSLDDVGSQVFQVIGTRRALPATPKDNVGSQVFFH
FT                 QANTVAYTSNPTIYDAVSSTSVSVDSFVKNPGHPGHSNPGGKSHPVMSTIH
FT                 SERPFPDPTVDQLPPLEPPGPSFSDVRSQSSYASSGHLGNSNPSGSSTKLL
FT                 KNSNPDVIETIAQHTIPSAPTTWPPRSLLMDDQPRSFSAMYSENLNPGAIA
FT                 VAPPPPVLLPPSSGTPGPFSLDNRPLFSEQINSDGTTAALTLAVRPISPLL
FT                 GDHHRCLDTSGARRLGSKDYSGFPSYSFDEVPLANANPPASSRSPEYPSGG
FT                 DSLNRSAAITPPNFPRHHSENSKDTSSSSTHSKNSPSENCDFRSRFPTPTL
FT                 PDPTKFCLQWNINGFYHNLSNLELLTHVSSPWVIALQEVNRTSTTAMNRSL
FT                 SGKYRWTMKKSRNVRHTVALGVLLSVPFEIIEIDSDLPIVAVRLVGSFRLT
FT                 IINCYLPCGSLSGIKEKILNIIRTTPEPRLLLGDFNAHHQIWGGDRTDPRG
FT                 TAILNALEDSDMVSLNDGSPTFYNGRVASSIDLSMASRSIAYKFLWQACAD
FT                 LHGSDHYPIQISAAVTSPPITRRPRWCYDRADWQIYQSNINHLLELEEPAS
FT                 LTSFSNVITKAAASAIPKSSSRPGRKALRWWSDDTRSIVKARRKALRALKR
FT                 LPNDHPEKEDKLRIYRAVNIKCRSTIRTAKRLSWEEFLDSMNPSQTSADLW
FT                 GKINALSGKRKITPISLDIQGSTITEPSAVAEALGNYFGSLVSIDAYDPVF
FT                 RQRIANNQSSLSNFVIPEDHGTSQLNCSFSMRELNFALGSSTGKSAGPDGI
FT                 GYPLIKNLPLGGKAKLLELINSMWHQRSFPDEWRESLVIPIPKTNVASRDT
FT                 SKYRPISLTCCLSKVVERTVNRRLKEQLEADGRLGHRQHAFRPGYGTDSYF
FT                 ASLGDLLHDARTKGQHADLVSLDISKAFNRTWTPLVLKQLTEWGFSGNLIG
FT                 FLKNFLLHRSFRVAVGNHSSSAFAEETGVPQGSVIAVTLFLVAMNGVFENL
FT                 PPDIYIFVYADDILLVAIGHTPRRTRVKAQAAVTAVHKWASSVGFSLSAAK
FT                 SVRGHVCNSRHKLVSPGIKIDGQPIPNRKTVRTLGILIDRNLLFKEHFNAV
FT                 KTNCRSRLNIIKTISKPHRSNNRSTRFRVAQAIVDSRLLYGLEITCLSQQN
FT                 LLEILSPIFNGYVRTISGLLPSTPADAACAEAGILPFRHRVHAAICRKAAT
FT                 YASKTAGNDRVALFDQADRILREVANSSLPPVARVHWHGASSWQLPPPIVD
FT                 EQIKKTFRSGDDSTVLRASVLELLRTKYPEHIHRYTDGSLSQRGVGIGISG
FT                 ADLTLCQSLPTECSVFSAEAAAIFYAAISPASAPILIITDSASVLSALQSE
FT                 RPSHPWIQGIRAHTPETVTFTWVPGHCGIQGNVAADLLAGTGHQMSRFTLS
FT                 VPPPDVKRWIAKSIRDYWAHEWHQNTSAQLRKVKGDTSSWEELSSLRDQKI
FT                 ISRLRTGHTRFAYNFDGRSFRQECEQCGVHNSAEHVICHCPLYGHHRSTNN
FT                 IPGSIRDALANDPASLSALICFLKETRLYYRT"
XX
SQ   Sequence 8314 BP; 2100 A; 2359 C; 1866 G; 1949 T; 40 other;
     cagtttgcat cgagccggcc ttgattgcac acgcttttta ttgcggtcgt tttacgttgt        60
     tttaattgtt cgttacgtaa tcgtgtttag ttgtttttta aacgttacta gtttttcacg       120
     gggtacgtgt gtgaaattag tgccgaatct taattgtcgt tgccgcgaaa tagcgttkag       180
     ccgagccctm aacgggcgag ttccctcttg ccggcgcgtg ttttttcacc cgggagaggg       240
     gaaaagttag tgaatttttg tcacgttttt acgtggccgt gtacactctg tgacccctat       300
     agtgcttgaa tagtgtcacc aagaagtctt aggggggagt agcatctact ctcagccctt       360
     cggggctaag aaaagccctt tcccagagtc ctctttggga aacaaatcca aagtgtgtgg       420
     caaaattttt tgacttcgcg aaattgaacg ccgctttacc agtgcataac agtggaagaa       480
     gcacacattt gaccggcagt gaccgtaaaa caagggtatt gtttcggtgt cgcattgata       540
     ttgcctgcct gagtttctca tagccgggcc tacagaaagt gatcggtggt ggactatata       600
     tattgctgtt gggaagaatt atatagtgct tcacgggcaa accctccccg caccccgcgg       660
     tgatagagag gtgttttttt acagtgctag tgttataccc acggtgtgcc tacaaccgtt       720
     gttaacaaaa aaagggaagt agtttctctc ctacgcattg gggtgcaagg atcaaaatag       780
     acccttgaca agagggttcg taggactcag tgcgcgattt gttttttttt tctttttcct       840
     cccccacgtc ttggggtttm gagwtgagac atttcagtag tgcgcgagtg cagatcgagt       900
     gaaccgttgc ttcctgttta gtgtgttcag ttgccgttca tctgctgcct tcaacagggt       960
     ttctccaggt gagttgtggg tggtggtgtt ttccgtgtga ggggccgcca tggcggctag      1020
     ttcggccgga ccacccacaa attcttggtg ggatggtcca gcgaatgata attttggtga      1080
     cagggttgat ggctcttttc cgggaccaac gcttccgccg ttcatggatc cagaagggct      1140
     ccacggcgag ctgcaccttt tgagaatttc tggtgttaac ggtcccctcc ccaacaagcc      1200
     cttccacatc cgacgttcgg tggaaaggtt tgtcggtggt aaaattgatg gcgcatttcc      1260
     agaggcaaat aagtcatctt atgctctgaa ggtgagaagt cagcggcaat tcaacaagct      1320
     gctggacatg aatcaactac tggacggtac cccggttctg gtcgcggaac acccaacttt      1380
     gaattcaacc cgttttgtgg tcagttgtag agatgtagtt gatatgtcag agcaggaact      1440
     actggaggag ttaaaggagc aaggtgtgaa agaagtcagg cgaatcacca agcgaaaagg      1500
     acaggcccgg gaaaacaccc cagctttagt actgacttgt cgtggcacca ttcgaccaga      1560
     aacaataaat tttggttaca tccgctgcag gacccgaccg tactacccga gtccaatgca      1620
     gtgttttaac tgctggcttt ttgggcacac caaactgcgt tgccaagcaa aagtcgcgac      1680
     atgtgggacc tgttccgggg atcacccgat tgccgagaac agagactgcg acattggcga      1740
     tttttgcaaa acctgcaact ccaacgaaca caggatmtcg agccgctctt gccctcggtg      1800
     gcaatatgag aacaccattc aaaaagtgaa ggtcgaccag gggatttcgt accctgcagc      1860
     ccgccgcwtg gttgagcaga accgaggcag tgsaactttc gccackatgg ctagctacgc      1920
     taccaaggwt ccccwacaac caagagaacg aaacgaagaa ttatcagccg ttctagcagc      1980
     maaggacgck gagatagcag agctccgggc wgcgcttgct actcgtsmag ctccttcggw      2040
     cacmgttagt agcgaaatag aaacactgaa gwccattgtc kctgaccagg ctaggcaaat      2100
     ccagctccta accgagcaag tctcagtwtt cctgaaagcc gtcatgccgg cagcmagcwt      2160
     tacaagccca acwaatcktg caccaacaac caaagctcta acwmcttcct ctgcaaccgw      2220
     cawtgaggaa actggcasct ccgagccatc tgcaactacc aacwccgctt ccgmcactac      2280
     ccttaacaac tcgcctacca ccagtaaaaa cggagtccac gaacctatcg tcgacccaga      2340
     agctkccaag gacaccatct cggcaccttt gtctksaagc gtcaccwcca acgaacagca      2400
     ccmagacaaa wtgcttgaca amgatccctc agactctgac actgcgtctt ccgaccgcag      2460
     cgcwaacatt gaattcttct ctccccacca gtctaaaaac acactctcac cacawactcc      2520
     caaaccgcct cgcactaggg ccctactccc tagaggtagc ggaagcaatg ttgaccccac      2580
     caaaaccccc ggtaaaaggc caataagctc aatatcccgc actgagaccc tgtttcagca      2640
     acagaaaaaa tcgaagataa aatctgccga gggccatgca gcggtctcca ataaaaggta      2700
     agtccatcaa ccctatccat cttctcacca ccaccccaac gccataaacc tgtctctcac      2760
     tgcactgatg cccatcacgc agcagcccaa atcaatcctc aacgcaacat cattttcttg      2820
     gctactgatc gtcggagcgc cggtgaactg gaagcaacgt ccgaaccaga atcgccgatc      2880
     cgactccggc atcatgccca aaataacagt cctgccgtct ctcttgatag tcggggcgcc      2940
     aatgtaccgg acgttttacc cctaccggaa tcgttgggcc gactccggcg tcttgaagac      3000
     gacatggacg aagagctccc gcttcactta cttcgttgcc cagctaaaac ccccggtagc      3060
     cagagccccg tcggtgcggt cgtttcccac tccggaactg acggacaacc tttggcgctg      3120
     ggggaagacc tggaagaggg aaatcaagtt gccaagccta cttccctgga cgacgtggga      3180
     agtcaagttt ttcaagtaat tgggacgcgt cgggctctac ccgctacccc aaaggacaac      3240
     gtgggaagtc aagttttctt tcatcaagca aatactgtag cctataccag caacccaacc      3300
     atctacgatg ccgtatcgtc aaccagcgta tcagttgatt ctttcgtgaa aaatcctggg      3360
     caccccgggc actccaaccc gggtggtaag tcccaccccg tcatgagcac aatacattcc      3420
     gagcgcccct ttccggaccc taccgtagat caactgccac ctttagagcc tcccgggcca      3480
     tccttttcgg acgtccgatc ccagagtagt tacgcctcat ctggacacct cgggaactcc      3540
     aaccccagtg gatcgtccac aaagctcctc aagaattcga atcctgatgt catcgaaacc      3600
     atagcgcaac ataccattcc ttccgctcca acgacatggc cgcccaggtc acttttaatg      3660
     gatgaccagc ctcggagctt cagtgcgatg tattctgaga accttaaccc cggcgccatt      3720
     gcagtggcac caccaccgcc cgttttattg ccaccatcat caggcacccc cgggccattt      3780
     tctttggata accggcccct tttctccgaa caaatcaact ccgatggaac cactgccgct      3840
     ctcacattag ctgtacgccc tatttcaccg cttctgggtg accaccaccg atgccttgac      3900
     acctccgggg cccgccgcct aggaagcaag gattattccg ggttcccttc atatagtttc      3960
     gatgaagttc ccctagcaaa tgcaaacccg cctgcgtcgt caagatctcc ggagtatccc      4020
     tctggtgggg actcgctgaa tcgttccgct gctataactc ctccgaattt tcccagacat      4080
     cactctgaga acagcaaaga tacatcatct tcatcaaccc actcaaaaaa ctcaccatcc      4140
     gagaactgtg atttccgatc ccggttcccc acaccaactc tacccgatcc caccaagttc      4200
     tgcctccagt ggaacattaa cggtttttac cacaatctga gcaatctaga gcttttgaca      4260
     cacgtcagtt ccccttgggt tattgctctg caggaggtga atcgtacgtc aactaccgct      4320
     atgaaccgct ccctcagcgg aaaatacaga tggacaatga agaaaagcag gaatgtgcgg      4380
     cacaccgtgg ccctcggcgt cttgctgagt gtccctttcg aaattataga aatcgacagt      4440
     gacttaccca ttgtagctgt tcgattagtt ggtagcttta ggctaacgat cattaactgc      4500
     taccttcctt gcggctccct ctctggaatc aaagagaaaa tcttaaacat aatcaggact      4560
     actccagagc cccgactgct ccttggagat ttcaatgcgc accatcaaat ctggggtggc      4620
     gataggacag atccacgcgg aacagctatc cttaacgccc tagaagattc ggacatggta      4680
     tccttaaatg acggctcacc caccttctac aacggccgtg tcgcttcgtc catagattta      4740
     tcaatggcaa gtcgctccat agcttacaag ttcctatggc aagcttgcgc cgacttgcat      4800
     ggtagtgatc attatccgat tcagatttct gcagcggtca cgtccccgcc aatcaccaga      4860
     cgccccaggt ggtgttacga tcgggcggac tggcaaatct accaatcaaa catcaatcat      4920
     cttctcgaat tagaagagcc tgcttcttta accagctttt ccaatgttat tacaaaggca      4980
     gctgcctcag ccatccccaa aagcagcagc agaccaggaa ggaaagctct tcgctggtgg      5040
     tctgatgaca cccgctccat tgtcaaagca cgccggaaag ccctgagagc acttaaaagg      5100
     cttcccaacg accatccgga gaaagaagat aaactcagga tttaccgagc cgtcaacata      5160
     aaatgtcgtt ccaccataag gacagccaag cggttatcat gggaagaatt tcttgattcc      5220
     atgaatcctt cccaaacctc ggcagattta tgggggaaga ttaacgccct aagtggtaaa      5280
     aggaaaatca cgccgatttc cctggacatc caagggtcaa cgatcaccga gccttctgcg      5340
     gttgccgaag ccctgggaaa ttactttggt agtctagtca gcatcgatgc atacgatcca      5400
     gttttccgcc aaagaatcgc taacaaccaa tctagtttat ccaatttcgt gattccggag      5460
     gaccatggca cctctcagtt gaattgctcc ttctccatgc gagagctcaa ctttgccctc      5520
     gggtctagta ctggtaaatc cgccggcccc gacggtattg gctaccccct cataaaaaac      5580
     ctccctctcg gaggtaaagc gaaactgtta gagctaatca atagtatgtg gcaccagcgc      5640
     tcattcccgg acgaatggag agaaagtctc gtcatcccta ttcccaaaac caacgtggcc      5700
     tctcgggaca catctaaata tcgtcccata tctctaacgt gttgcctctc gaaggtggtc      5760
     gagagaacgg ttaaccgacg attaaaagag cagctcgaag cggatggtcg cctcggacat      5820
     cgacagcacg ccttcaggcc gggatacggc actgactctt acttcgcctc ccttggagac      5880
     ctccttcatg atgcgcggac aaaaggacag catgcagacc tcgtttcact ggacatttcc      5940
     aaggcgttca atagaacatg gacgcctttg gtactaaaac aactgacgga atggggtttc      6000
     tccgggaacc tgatcggctt ccttaaaaac tttcttctgc atcgatcttt tcgggttgca      6060
     gtagggaacc acagctcaag cgccttcgcc gaggaaactg gggtcccaca aggttcggtc      6120
     atcgcggtta cgctgttcct ggtagcgatg aacggagtgt tcgaaaactt gccgccagac      6180
     atttacattt ttgtatatgc tgacgacatc ttgctggtag ccattggtca tactcctagg      6240
     cgcactagag tcaaagcgca agcagcagta acggcagtac acaaatgggc ttcttctgtt      6300
     ggtttttccc tctccgcagc taaaagcgtc cgcggccacg tttgtaactc gcgacacaaa      6360
     ctagtgagtc caggaatcaa aattgacggg caacccattc caaacaggaa aactgtcagg      6420
     actttaggaa ttttgattga ccgtaacctg ctgtttaagg agcatttcaa tgctgtcaaa      6480
     acgaactgtc gttcccgtct gaacatcatt aaaacgatat ccaagccgca taggtccaac      6540
     aatcgatcca cgcgcttcag ggtagcacaa gctatcgtag atagcaggct actttacggt      6600
     ctcgagatca cctgtttgag ccaacaaaat ctgcttgaaa tcctctcacc gattttcaac      6660
     gggtacgtcc gcactatctc cggtttactt ccatcaaccc ccgccgacgc agcctgtgca      6720
     gaagctggta tcctcccatt ccgccatcga gtgcacgcag ccatctgccg caaggcggct      6780
     acttacgctt caaaaacagc tggaaacgat agagtcgctc tctttgatca agcagatcgt      6840
     atcctccgtg aggttgccaa ctccagtctt ccccctgtgg ctagagtaca ctggcatgga      6900
     gcgagcagtt ggcagcttcc ccctccaatc gtagacgagc agataaaaaa gaccttccgt      6960
     agtggcgatg actctacggt gcttagagcg tccgtactgg aacttctgcg cactaaatac      7020
     ccggaacaca tacaccgtta cacagacggc tctctttcgc agcgtggagt aggtatcggc      7080
     atctctggcg ctgacctgac actctgtcaa agccttccaa ctgagtgttc ggttttctct      7140
     gccgaagcag cggccatctt ttatgcagcc atctcaccag cgagtgctcc aatcctcatc      7200
     atcaccgatt ccgcaagcgt cctatcagcc ttgcagtcag aacggccgtc ccacccgtgg      7260
     atacagggta tacgagccca tactccagag acagtcacct ttacctgggt ccctgggcat      7320
     tgcggtattc aaggaaatgt ggctgcagac ttgttagctg gtacgggaca ccaaatgtct      7380
     cgttttaccc tttccgttcc acccccagac gtaaaacgct ggatcgctaa atccatcaga      7440
     gactattggg cccatgagtg gcaccaaaat acttcggctc agcttcggaa ggtaaaagga      7500
     gatacctcta gctgggaaga gctctcctcg ctccgcgacc agaaaataat ttcgcgcctt      7560
     aggaccggac atacccgttt tgcctataac tttgatggca gatccttccg tcaagagtgt      7620
     gaacaatgcg gtgtacacaa ctcagcggaa catgtaatct gccactgccc tctctacgga      7680
     caccacagaa gcactaataa cattcccgga agcatccgcg atgccctcgc aaatgacccc      7740
     gcatcattgt cggccctaat ttgcttcctt aaggaaacca gactctacta ccgcacgtga      7800
     cgactctaca acctgatctc aacttaatcc acgtcagaga atacggattg gacgatcggt      7860
     gggctccctg aagacctttc tttcgggggt aagtcccatc caaccaacgt aacccctaac      7920
     gcaaccgcac catcatttca atgaacctgc aagaatcttc acaccgccgc gaccggtggg      7980
     ctccccggaa gattccgttt tcggggataa gacccatcca acaacaaagt catcaatcgc      8040
     aaccacgcca acgatccttt ctctttttct cggctgcaga agacgtcggc ccagcaaatg      8100
     cgcacgtacc cccttttttt aagttgtttt tatcgtccta cgtgaaaaac gcacaatggt      8160
     gagaccccat ggttgggctc aaaggctggt ccctctgacc atccttcttt actcattttt      8220
     cgtgggatgc ccatctggca tttccagtca ggtgaagaac tagccattcg tcaatgtgct      8280
     aaaattcacc ttaataaaga aacaaaaaaa aaaa                                  8314
//
ID   I_Ele42     repbase;    DNA;    INV; 5990 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele42.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5990
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5990
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 14
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           306..1649
FT                 /product="I_Ele42_1p"
FT                 /translation="MAGSSSAPPGGTAGHQSRSNLPQWMIGPDDIGQTVVL
FT                 VLRRDTKSTDDFDHGLSQNSPLPHPFVVGSSIQQIIGVEAARSINTTREGR
FT                 GSRYLLRTKSRIISDKLMKITELCDGTRVEIVPHPTLNTVQGMVYEPDSLD
FT                 VDEKLIEQELKSQGVLAVRRIKKRVNGKLQNTPLLVLSISGTILPEFVYFG
FT                 LLRIPIRKYYASPMMCFNCGFYGHSRRFCNQTAICLRCSTTHTVVEGEQCN
FT                 HDPKCLHCKGGHPTYSRDCPKYKEEEKIVRLKTDLGISNAEARRMYNESNR
FT                 TDSFSKVVQDEVQQELAKKDQLIASLQKQVAALAKEIGLLKKSQRSFAHSL
FT                 SPVPQNQKSSATQSKQIKPTTSTTHQQPTQNTSNRISRRDKIASSTPCKRT
FT                 TERSNEKMDYDILTRSRSGKRHFEISPTDSGKSSGKRSLAPPGSKSPTSIE
FT                 VDE"
FT   CDS           1649..5911
FT                 /product="I_Ele42_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MMIQQPRINHIKTIDMTDPAMTKDPRMEDQTTTHANF
FT                 DDSSIQSEHDLEQRLHTTPATYQLHRKRFEGDESVVLPSLPEEEAVLESAV
FT                 VQDVILPPVDHQTSSPAVEVIHLPPLPNSAKSNCNIYDALRNITVHPSTSK
FT                 DHATRNFDSPSARLPTSTLTREVPDWSDEPLAAVDVDHPYDPASINLTLPP
FT                 SVQSNPIGYSNIPAMSNDRTHCEQSTLSNDDSSYQSSQEQRRNLLFLQWNI
FT                 RGFWSNHTELYHLVHRNPPIAIGLQEMMAKDADKALQRQYTWCFSDRHYSQ
FT                 GVGAAGLGIRTEVPHKFIGISCPIPVCTARLFDPYNITVVSIYVPPNSPDK
FT                 HIIDTLNSIISNAEPPFIIGGDFNAAHEAWGSSKASKRGRQLLCWFVENDF
FT                 IVLNNGEPTFLSSRHGSTSCIDITAVSKSFASRLHWSIANDTHGSDHFPIK
FT                 VYSQEALLEKRNRKRWLYKNANWTLFEHNILESMEIEADLSIDKLGDIILK
FT                 SAKASIPRTSGKPSKRAEIWWSEEVKAAIKTRRKALRKLKRTATNDPEHER
FT                 IRKAFQSARSIARKTVSTAKRESWDVFCNSFNPQTPSETLWNNFNKLNGKR
FT                 KNGTKGLVIRGTYEQDPSVITEHFADFFQQASATSVSHESNLPQSVTNENS
FT                 PLNEDFHISELLRAIDSTKGYSTGSDNIGYPMIRHLPIAGKYAMLRSFNRV
FT                 WAEGRFPQSWREGIVIPIPKPNMPRNTVENYRPITLLSCIGKIYERMVNHR
FT                 LVTFLEEQNILHPQQHAFRAGRGTSTYFAELKEIIENAKQSKTHLEFALLD
FT                 IQKAYDQAWRPHILHQLNRLHVGNRIKSCIKHYLQDRNFRVSYGGSLSSQK
FT                 SLDNGVPQGSVLAVTLFLLAINPVFEVIPKNIQVLVYADDIVLVASSKQLS
FT                 KVRQHLSNAVKAVNEWAKSVKFSLSPSKSCILHVCQRTGHRGYRSLPDICL
FT                 NGEVIPEVNSARFLGVWMNRRGKFSIHAAKTKIALQNRINFIKAISPKASR
FT                 ESLWKISNAVCISKLLYGVELFGNEITTLLQPVFNQLLRISSGALRSSPTH
FT                 SLAAEAGELPLQLRVIELFVRKYCKITEKSRRTYTHYRRAVDLTLCEVVGV
FT                 ELPNIAKLQRVGRRPWNSPRIKTDLSIKHAFKKGQNTRIARVITEDHLISK
FT                 YANYMKIFTDGSKSGSEVGVGVIGPTFFVERSLXSQCSVYTAEAAALLTAA
FT                 HHAPRTETVILSDSASCITAIEKGESTHPFLQEFEKISAHKNITVCWIPAH
FT                 SGIQGNELADKAAERGRSSRLLYRSIPASDVIFWVKQQLRRNFQEQWSNNK
FT                 TTFLQFCKPTVSKWIDRENRLEQKMLTRLRIGHTIITKKHLYDKMSPRKCD
FT                 TCNIDLTVEHILLNCRKFELIREELAMSNNIEIVLGNSKENESTLIKFIKK
FT                 CKLVDKI"
XX
SQ   Sequence 5990 BP; 1897 A; 1431 C; 1225 G; 1436 T; 1 other;
     tagcgctcgt aattttcgtt ttttttttcg ccaaccgctg tattaagaag acccaaatca        60
     agttacaggt gggagtagtg aagttttccc aaaactcgtt agttcagttg ttaaaaacag       120
     taaactgtta gtgcaattat cacgcggcgc cgggttgtgt agttacatac atgcacactc       180
     gctattgtgc tagctggtaa acagcccgag tgaacagata tttccaaact ggtgctgaat       240
     ctgtacaaat acctccgtct ggaaaaaaaa atcgaagtgt ataaagcgtt agcaagctac       300
     ggcccatggc cggtagctca agtgcccctc cggggggcac agctgggcac cagagccgta       360
     gtaatttgcc ccaatggatg ataggacccg atgatatcgg ccaaaccgtg gtgttagtac       420
     ttcgtcgcga cacaaaaagt acagatgatt ttgaccacgg gctatcacaa aactcccctc       480
     taccacatcc attcgttgtt ggatcgtcaa tccaacaaat tatcggcgtt gaagcagcta       540
     gatcaatcaa cactactcgt gagggacgcg gatctcgata tttgctccgt accaaatcaa       600
     ggatcatttc tgataagctt atgaaaatca ctgagctgtg cgatggtacc cgtgtggaaa       660
     ttgttccgca tccaaccttg aacactgttc agggtatggt ttacgaaccg gattccctcg       720
     acgttgacga aaagctgatt gaacaagaat tgaaatctca gggagttctg gcagtgcgtc       780
     gaattaaaaa acgggtcaac ggaaaactgc aaaacacccc actacttgta ctgtcaatca       840
     gtgggacaat actgcctgaa tttgtctact tcggcttgct tcgcatacca attcgcaaat       900
     attatgcttc gcccatgatg tgttttaatt gcggtttcta cggccattcc cggagattct       960
     gcaaccaaac cgctatctgc ttacgctgct caacaacaca tacagtcgtt gaaggggagc      1020
     aatgtaacca cgatcctaag tgcttgcact gtaagggcgg acatcccaca tactcacgcg      1080
     actgtcccaa atataaggaa gaagaaaaga tagtgcgact gaaaacagat ctgggtattt      1140
     cgaacgcaga agcaaggcgc atgtacaacg aatcaaatag aaccgactcg ttcagtaagg      1200
     ttgttcaaga tgaagtacaa caggaactag caaaaaaaga tcagctcata gcatctctac      1260
     agaaacaagt ggctgcactt gctaaagaaa ttggattgtt aaaaaaatca caaagatcgt      1320
     ttgcacacag cctgtcccca gttccgcaga atcaaaaatc atccgctact caatccaagc      1380
     aaataaaacc aaccacttct acaacacacc agcaacccac acagaatact agcaatcgca      1440
     tatctcgtag agataaaata gcctcgtcta caccatgcaa gcgcactacc gagagaagca      1500
     atgaaaaaat ggactacgat attctaacgc gaagcagaag tggtaaacgg cattttgaaa      1560
     tatcccccac ggactccggc aaaagttcgg gaaaacgaag tctagcgccc cctggatcga      1620
     aaagccctac ttccattgaa gtagacgaat gatgattcaa caaccacgca taaatcacat      1680
     caagaccatc gacatgactg accctgctat gacaaaggac ccgagaatgg aggaccaaac      1740
     tactacccat gctaatttcg acgacagctc tatccaatcg gaacacgatt tggaacaacg      1800
     gctacatact actccagcta cataccaact acatcgaaaa cggtttgaag gcgacgaaag      1860
     tgtagtactc ccttcacttc cggaagagga agcggtactg gaaagtgcgg tggtccagga      1920
     cgtcattctt ccacctgtag atcaccaaac ttctagtccg gccgttgaag ttattcatct      1980
     tcccccgcta ccaaattcag ccaaaagtaa ctgcaatatc tacgacgctc ttcggaacat      2040
     caccgtacat ccatctacga gcaaggatca cgccacaaga aactttgatt cgccaagtgc      2100
     gaggcttccc acgtcgaccc tgaccagaga ggtgccggat tggtccgatg agcctctggc      2160
     ggcagtcgac gtggaccacc cctacgaccc ggcaagtatc aatcttacat taccccctag      2220
     tgttcaatca aatcccatcg gttactccaa cattccagcc atgtccaacg atagaactca      2280
     ctgcgaacaa tcaaccctga gcaacgatga cagcagctat caatctagcc aggagcaacg      2340
     cagaaaccta ttatttttgc aatggaacat aagaggtttt tggagtaatc acactgaatt      2400
     gtaccacctt gtgcatcgga acccaccaat agctatcggt ttgcaagaga tgatggcgaa      2460
     agatgcagat aaggcgcttc aacggcaata tacatggtgt ttctcagacc gacattactc      2520
     tcaaggtgta ggtgctgccg gtctcggaat tcgaactgaa gtaccccaca agttcattgg      2580
     gatatcttgc ccaatccctg tctgtaccgc tcgtttattt gacccgtaca atatcacagt      2640
     ggtttcaatt tatgtgccac caaatagtcc agacaaacat attatcgata ccttgaacag      2700
     catcatatcg aatgcagagc ccccctttat catagggggg gacttcaacg ccgcccacga      2760
     agcttggggc agttcaaaag catccaaaag aggacgacaa ctattatgtt ggttcgttga      2820
     aaatgatttc attgtgttaa acaacggaga acccaccttt ttgagctcgc gccacggcag      2880
     cacatcttgt atagatataa cggctgtgtc aaaaagtttc gcaagccgac tgcactggtc      2940
     aatcgctaat gacacacacg gcagtgatca ttttccgatc aaagtgtact cccaagaagc      3000
     gttattggaa aaacgaaatc gcaagcgatg gctgtacaaa aacgccaact ggactctttt      3060
     cgaacacaac atactcgaat ctatggaaat cgaagcagac ctttcaatcg acaagctagg      3120
     ggatattatc ctcaaatcag ctaaggcatc aattccaagg acatctggca agccaagcaa      3180
     aagagcagag atctggtggt ctgaagaagt caaggcagca atcaagacgc gtcgaaaggc      3240
     cctgcgaaaa ttaaaacgta ctgcaacaaa tgaccccgag cacgaacgta taaggaaagc      3300
     attccaatcg gctcgttcca tagctagaaa aactgtgtcc acagctaagc gagaatcctg      3360
     ggacgtattc tgcaacagtt tcaatccaca aactccctcc gaaacgctat ggaacaactt      3420
     caacaaactt aacggaaaga ggaagaatgg aactaaaggc ctcgtcatcc gtggtactta      3480
     tgaacaggac ccatccgtca tcactgaaca cttcgccgat tttttccagc aagcttcagc      3540
     aacttctgtc agtcacgaaa gcaatttgcc gcaatctgtt actaacgaga actcaccctt      3600
     gaatgaggac tttcacatca gtgagctctt gcgcgccatc gactcaacaa aaggctactc      3660
     tacaggtagc gacaatattg gatatccaat gattcgacac ctacctattg ctggaaaata      3720
     cgctatgctg cgatcattca atcgcgtttg ggccgaagga agatttccac aaagctggag      3780
     agaaggtata gtgataccca ttcctaaacc caacatgccc cgaaacaccg tggaaaacta      3840
     ccgacccatc actcttctga gttgcattgg gaagatctac gagaggatgg taaatcatcg      3900
     tttagtcact ttcctagaag agcaaaatat tctccaccca caacagcatg cttttcgagc      3960
     tggtcgagga acgtcaacat atttcgccga actaaaagaa ataatagaga acgccaaaca      4020
     atcgaaaact catctcgaat ttgcgttact tgatattcag aaggcttacg atcaggcgtg      4080
     gcgaccgcac attctgcatc agctaaaccg cttgcacgtg ggcaatcgca tcaaatcttg      4140
     catcaaacat tatcttcagg atcgcaattt tcgagttagc tacggcggtt cactttcgtc      4200
     acaaaaatct ttagacaacg gtgttccgca aggatcggtg ctggcagtta cgttatttct      4260
     attggccata aatccagttt tcgaagtaat tccaaaaaat attcaagttt tggtttatgc      4320
     ggacgatata gtgctagtgg cttcttcgaa acaactctcc aaagtacgac aacatctctc      4380
     gaacgcagtt aaggcggtaa atgaatgggc aaaaagcgtt aaatttagcc tctctccatc      4440
     taaatcgtgc atcttgcatg tttgccaaag aacgggacac agaggatacc gatcactacc      4500
     tgacatttgt ttgaacggtg aagtcatccc cgaggtaaac tcggctcgat ttctcggagt      4560
     ctggatgaat cgaagaggaa aattttcaat ccatgctgcc aagaccaaaa tagctcttca      4620
     aaaccgtatt aacttcatca aagctatatc gccaaaagcc agcagagaat ctttatggaa      4680
     aatttctaat gcagtttgta tatcgaagct gttgtacgga gtagaattat tcggaaatga      4740
     aatcaccacc cttctacaac ctgttttcaa tcaactgcta agaatctctt ctggagctct      4800
     tcgttcttct cccacacata gcttggccgc tgaagcgggg gaacttccat tacaattacg      4860
     ggtaattgag ttgttcgtcc gaaaatactg caagataacc gaaaaaagta gacgaacata      4920
     tacgcactat cgaagagctg ttgatctcac tctctgcgaa gtcgtaggtg ttgagcttcc      4980
     gaatattgct aaattgcaac gtgtcggccg ccgcccttgg aattcaccac gcattaagac      5040
     tgatttgtct attaagcatg ccttcaagaa agggcagaat accagaattg ccagagttat      5100
     taccgaagat catctcatct ctaaatacgc caactacatg aagattttca ctgacgggtc      5160
     aaaaagtggt tccgaagtcg gtgttggagt tatcgggccc accttttttg tcgaaagaag      5220
     tcttcwatca cagtgcagtg tctacacggc agaagctgcc gctttactaa ctgcagctca      5280
     tcatgctccg agaactgaaa ccgtgatatt gtctgactct gcaagctgta tcactgctat      5340
     cgaaaaaggt gaatcaactc acccattcct acaagagttt gaaaaaatat cagcgcataa      5400
     aaatataaca gtttgctgga taccagccca ttctggtatt caaggaaacg agctagcaga      5460
     caaagcggct gaacgtggtc ggtcgtctag gctcctttat agatcgatac ccgcttcaga      5520
     cgtcatcttc tgggttaaac aacaacttcg cagaaatttt caggagcaat ggtccaacaa      5580
     caaaacaact ttcctgcagt tttgtaaacc aacagttagt aaatggatag atagagagaa      5640
     tcgactggaa cagaaaatgt taacaagact ccgcataggc cataccataa taactaaaaa      5700
     acatttgtat gataaaatga gcccccgaaa atgtgatacc tgtaacatag atttaacagt      5760
     tgagcatatt cttttgaatt gtagaaagtt tgagttgatt agggaagaac ttgccatgag      5820
     taacaatatt gaaatagtct tgggaaattc caaggaaaac gaatcaacac taatcaagtt      5880
     catcaaaaaa tgtaaactag tcgataaaat ttgaagttct tttaccccag aaataaaaga      5940
     ggcgaatgaa ccataaggtt taaaacctct ataataaaaa aaaaaaataa                 5990
//
ID   I_Ele43     repbase;    DNA;    INV; 6823 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele43.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6823
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6823
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with 93-96% identity, and ~94% identical to the
CC   original sequence in [1]. Both termini are frequently associated
CC   with (TAA)n or (TTA)n microsatellites, indicating
CC   sequence-specific insertion into microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           560..1849
FT                 /product="I_Ele43_1p"
FT                 /translation="MAAASSGDPGGSAKRRLPEYMDPTNQFGELTFLQLSG
FT                 KNGAPLPINPYITGKSVEACAGGPIESAKTEAQGTKYTLRVRDPAQVAKLL
FT                 KLTKLIDGTEVEVVPHPNLNVSRCVISCXDLIQMEEKDILTEMISQKVIRV
FT                 QRITRNEGGKRVNTPALILTFCRTTYPEYMKVGLLRVATRPYFPNPMLCYG
FT                 CFSYGHTRVRCPGPQRCVNCSQNFHGEECGEAPSCRNCKGDHRPTNRQCPV
FT                 YKKEVQVIKIKVSENLSFPEARKRVEQQAGSFAQVAAQQSVFERKLKELEA
FT                 AMLQKDKEIARLQEDNKKKEERIEQMMAFIKQVKQQSNPERVHHVSETVVA
FT                 EKPRHSREQRVAQSTAGPMTRSRNNSPAVQETKRGRPPKFVYPKPAXSPDT
FT                 SPPPKKTAPTTHDLTQMEYSGEESEVSETPPNQRLR"
FT   CDS           1785..6665
FT                 /product="I_Ele43_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="LRWSIPAKSLRYRRHPLTSVFDNPTLEQRSEYNDDPR
FT                 TNTDNETFRFGSRESVVPLPTQVRQAEGVIRDVLPQPVDDEFTSVADGPND
FT                 YTTTLQTQSAPTSSNSIESNNRHTDDTTQSLSPVPAIAGVSGSSRVVVSAM
FT                 AGTVGQDVPQVSLLNSQPQTGTAAPAIFSDTHHTTPTAANPNQQRPTSTNR
FT                 LAINNRPEETTQSLSPVPAVAGVSGISRVVVSAMAGTVGQDVPQVSFRLSL
FT                 PQSGTAAPAILSDTHQTPPTTANTNRHQPASTYRLVFNNQPTDDTTQSLSP
FT                 VPAVAGVSGSNRVVVSAMAGTVGQDVPQVSLSKFPSQTVAAAPDYLSGYAA
FT                 SPPSPGEGPSRVHRRNITQSASPVPAVVGIGRTSVMVSTAAGTVGQSVPQA
FT                 SDSLVPSSSEATALPLSPTTDPPIRRSSTSSSTTRSATDSRSGGCFALQWN
FT                 IRGLRANISELKLLISDLEPCVVALQETKVNQTVVPPDFVGRNYTLLLQST
FT                 NANYWQHGVGLAIREGIPFERIQVDTSLHLVAARLHAPIQATVVSIYVPPS
FT                 SAQCQTALDELFDQLEGPILLLGDFNAHHIAWGSHQSSALGRFIAETTLTK
FT                 QMVILNDGSATRIDPASGNTSAIDVTICTESLARRFTWRTLTDTHGSDHFP
FT                 IAVSIPGWSNQQTTRRKWLYDRADWELYERITAETIRPEVEWNVGSFTEKL
FT                 IEAASKSIPRTSGRIGPKAVPWWCPEAKAAIRRRRKCLRSLRRLQQVNPDQ
FT                 PEALAEFQAAKAEARKAIKEAKEKSWESFVGKISPHSTTTELWRTVNTLRG
FT                 NRQKRSVILKRPNGFTDNPEEVAEELATYYGERSATSSYPPSFQMAKMAAE
FT                 RESIDVSSNTGDAYNVDITLAELLWALDKGRGASTGTDGIGYPLLQRLPVS
FT                 VKFVLLELLNKIWRNGEFPASWRNALVVPIPKPNCQDSGPAAFRPISLTSC
FT                 MAKTLERIINRRLITELESNGRLDKRQHAFRVGRGTDTYFAELERSIPNAD
FT                 EHCLIASLDLSKAYDTTWRHGILRTLKSWRIRGRMMNLLQSFLSERTFQVS
FT                 LGGYTSSEHKLENGVPQGSVLSVTLFLVAMQPIFRVLPDGVDILLYADDIL
FT                 LVVKRAKSEGLHTKLQAAVKAVCKWAKSVGFAMSAAKSHVFYCSPNARREP
FT                 ARNVIVDQVSVPKTNRLRVLGVTLDRTLTFKPHCKMVKKACESRLRILQMI
FT                 GAKLPRGNRTSLLQVGSALVTAKLTYGIGLVSRGGPATLQTLAPAYNKMVR
FT                 YASGAFVTSPIISVMAEAGTLPFELLAVQCVARTAIRILAKNSRNNTLPLI
FT                 RRASDRLEELTGTALPAVGQLVRQGDRAWNERKPSIVWDVKRSIRAGDPPE
FT                 KVRPVVQQLLSTRFRNSTVVYTDGSKCEDTVGAAFYNNGISGTFSLPKECS
FT                 VFSAEAYAIKKAVSIPNIRNEVVILTDSASCLQALEAGSSKHPWIQEIEHI
FT                 VRNKNVRFCWIPGHAGITGNNEADRLANAARQQPAIDTPIPGEDALRATKE
FT                 AIRCRWDRQWFAIRDNKLREIKHDTKRWTERGNAADQRVLTRLRIGHTRLT
FT                 HTFLLKKESPPTCECCGTSLDVRHLILHCRKYEQERRKYDIDTLSLKEALD
FT                 DTKERTKSC"
XX
SQ   Sequence 6823 BP; 1779 A; 1849 C; 1789 G; 1401 T; 5 other;
     cagatcgttc cggcacactg tgttgaccgg ttgtcttcgt tcacgcgttc gagttaaacc        60
     aggtgttttt ccgagttttt cgcggttttc gcgatcgaaa cgcgtgtgaa tctgtggttg       120
     cggtggtgaa gaataagtgc atattgaagg tttggtgaaa atcggtgtta aaacggccga       180
     aaacggcgaa aaaaagtgac acccacgtgc tttgaaacgg ccaaacaaat cgccgtcagc       240
     cggctccccg gccgttctca ttcagcattc ggtggtgcac agtgtgcttg aattgttttt       300
     cgctgaaaca aaaaaaaaag tgtcggaagt ttgggaaata ggtggaattg agaaagtgag       360
     cgattctcat caggggtttc actacagtag tgtccagtag tgcctacagt gcggcacaaa       420
     attttgggaa cgcctggcca tcggtctcta cgtccgagga gaaaataagg taggatcttt       480
     ccttttactt ttccgtcgtc caattggggt aggtaacggg tgaccgttgc cagtggaagt       540
     gttttccacg taaaacaaca tggcggccgc tagtagcggc gacccagggg ggtccgccaa       600
     acgtagattg ccggagtaca tggacccaac gaaccaattt ggcgagttga cgttcctcca       660
     gctgtctgga aaaaacggag ctccgcttcc gatcaacccg tacattaccg ggaaatcggt       720
     tgaggcatgt gccggcggac caattgagag cgcgaagacc gaagcgcagg gtacaaaata       780
     caccctaaga gttcgcgacc cagcccaagt agccaagtta cttaagttaa cgaagctaat       840
     tgatggaact gaggtagagg tcgtccctca ccccaatctg aacgttagta gatgcgtcat       900
     ctcstgcwtg gacctmattc agatggagga aaaggacatt ttgacggaga tgattagcca       960
     gaaggtgatt cgtgtgcagc gtatcacccg aaatgaaggt ggcaaaaggg tcaatacacc      1020
     ggcgctgatc cttacgttct gtaggaccac gtacccggag tatatgaaag ttggcttgct      1080
     ccgtgtcgct actcgcccct actttccgaa cccgatgctc tgctacggct gcttcagcta      1140
     cgggcacact cgtgttcgtt gccctggacc gcaacgctgc gtcaattgct cgcagaactt      1200
     ccacggggaa gaatgcggtg aagctccgtc gtgccgtaat tgcaagggtg atcatcggcc      1260
     aaccaatcgc cagtgtccgg tgtataaaaa ggaagtgcaa gtgattaaga tcaaagtgag      1320
     cgaaaacctg agtttcccgg aggccagaaa acgcgtggag caacaagctg gtagcttcgc      1380
     ccaggtagcg gcccaacaga gcgtttttga gaggaagctg aaggagctgg aagcggccat      1440
     gctccaaaaa gataaggaaa tcgccmggtt acaggaagac aacaaaaaga aagaggagag      1500
     gatcgagcag atgatggctt tcatcaagca ggtcaagcag cagtctaacc cagagagagt      1560
     gcatcatgtg agcgaaaccg tcgtcgctga gaagccccgc cacagccgag agcaacgagt      1620
     ggcccagtcg acggctggcc cgatgacacg ctcaaggaac aactccccgg ccgttcagga      1680
     gaccaagcgc ggaagacctc caaaattcgt ctaccccaaa ccagccwcct cgccagatac      1740
     cagcccgccc ccgaagaaga ccgcacccac tacccatgac ctgactcaga tggagtattc      1800
     cggcgaagag tctgaggtat cggagacacc ccctaaccag cgtcttcgat aaccccactc      1860
     tcgaacaacg ttcggaatac aacgacgacc ctcgcacgaa cacggacaac gagacttttc      1920
     ggttcggaag tagggaaagt gtagtacctc ttccgacgca agtacggcag gctgaaggag      1980
     tcatccggga cgtcttaccc caacccgttg atgacgagtt cacctccgta gccgatggac      2040
     ccaacgacta taccacgaca ctacaaactc aatcggcacc aacatcaagc aacagcatcg      2100
     aatccaacaa ccggcacacc gacgatacta cacaaagtct ttccccagtg ccagctattg      2160
     ccggtgtttc tggaagcagt cgtgtagtag tttcggcaat ggctggcact gtggggcaag      2220
     acgtcccaca ggtcagtctt ttgaattctc aaccacaaac aggtactgcc gcgcctgcaa      2280
     tcttttcaga tacccaccat accacaccaa ccgcagcaaa tcccaatcaa cagcgaccaa      2340
     catcaaccaa tcgtctcgct atcaacaacc gccccgaaga aactacacaa agtctttccc      2400
     cagtgccggc tgttgccggt gtttctggaa tcagtcgtgt agttgtttcg gcaatggctg      2460
     gcactgtggg acaagacgtc ccacaggtca gttttcgctt atccctacct caatcaggta      2520
     ctgccgcgcc tgcaatactt tcagacaccc accaaacacc accaaccact gcgaatacca      2580
     atcgacatca accagcatca acctaccgcc tcgtattcaa caaccaaccc accgacgata      2640
     ctacacaaag tctttcccca gtgccggctg ttgccggtgt ttctggaagc aatcgtgtag      2700
     tagtttcggc aatggctggc actgtgggac aagacgtccc acaggtcagt ctttctaaat      2760
     tcccatccca aacggttgct gctgcgcctg attatctttc agggtacgcc gcatcaccac      2820
     catctcccgg agaaggccct tcgagagttc accgcagaaa cattacacaa agcgcttccc      2880
     cagtgccggc tgttgtcggt attggcagaa ctagtgtaat ggtttcgaca gcagctggta      2940
     ctgtgggaca aagcgtccca caggcaagtg acagtttggt tccttcgtcg tcagaggcta      3000
     ccgcactccc tctttctccc acaacagacc cgccgatccg aagatcatca acctcgtcat      3060
     ccaccacacg atcagctacg gatagtcgct ccggcggctg cttcgccctc cagtggaata      3120
     tccgtggtct tagggccaac atcagcgagc taaagctgct aatctccgac ctcgaaccgt      3180
     gcgtcgtagc tttgcaggag accaaggtga accagactgt tgttccgcca gacttcgttg      3240
     gcagaaacta cacgttgctg ctacagtcga cgaacgctaa ctactggcaa catggtgtag      3300
     gccttgccat ccgggaaggc ataccgttcg aacgcatcca agtcgatacc tctctgcatc      3360
     tcgttgctgc tcgccttcac gcgccgatcc aggcaactgt tgtgtcgata tacgttccgc      3420
     cgagttcagc tcagtgccag accgcactgg atgaattgtt cgaccagctg gaaggtccga      3480
     ttttactcct cggagacttc aacgctcacc acatcgcatg gggatcgcac caatcaagcg      3540
     cgcttgggcg attcatagcc gaaacaaccc tgacgaagca aatggtgatc ttgaacgacg      3600
     gctcagctac ccgcatcgac ccggcttcgg gcaacacttc ggcgatcgat gtgaccatct      3660
     gcacagagag tctggctcgg aggttcacct ggcgaacctt aacagacacg cacggtagcg      3720
     atcacttccc gattgcagta tccatacctg ggtggtcgaa tcagcaaaca acgcgacgaa      3780
     aatggctgta cgatcgggct gattgggagc tatacgaacg gattacagca gaaaccatcc      3840
     gcccagaggt cgagtggaat gtaggaagct tcaccgaaaa actaattgaa gcagcgtcta      3900
     agtccatccc gcggactagt ggccgaatcg gtccgaaagc ggtaccatgg tggtgccccg      3960
     aggcaaaggc ggcaattcgt cgacgacgaa agtgtcttcg gtcactccga cgtttacagc      4020
     aggtcaaccc agatcaaccc gaagcgttgg cggaattcca agcagcgaaa gcggaggcgc      4080
     gaaaggcgat taaagaagcg aaggagaaat cgtgggaaag cttcgtaggg aagatctccc      4140
     cgcacagtac aacgaccgaa ctgtggcgca cggttaacac cttgcgtgga aatcggcaga      4200
     aacgctcagt tatcctcaaa cggcctaacg gtttcacgga caaccccgaa gaagtagcgg      4260
     aagaactagc gacgtactac ggcgaaagat cggcgacgtc cagctaccct ccatcgtttc      4320
     agatggcgaa aatggcagct gagagagagt ccatagatgt ttcgtctaat accggcgacg      4380
     cgtacaacgt tgacatcacc ctagccgaac ttctgtgggc tctcgacaaa gggcgaggtg      4440
     cctcgacagg taccgatggg atagggtacc cgctgcttca acgtcttccc gtgtccgtaa      4500
     aatttgtact gctggagctg ctgaacaaaa tctggcgcaa cggtgagttt cccgccagct      4560
     ggcggaacgc cctcgtcgtc ccgattccga agccgaactg ccaagattcc ggtcctgctg      4620
     ccttccgccc tatctcgctt accagctgca tggcgaagac actcgagcga atcatcaacc      4680
     gtcgtcttat cacggagcta gagtcgaacg gacgacttga caagcgtcag cacgcttttc      4740
     gtgtgggacg cggtaccgac acgtacttcg ccgagctgga gaggtcgata ccgaacgccg      4800
     acgaacactg tttgatagcg tctctggatc tgtcgaaggc atacgacacc acctggcgac      4860
     acggtattct tcgcaccctg aaatcatggc ggatacgtgg tcggatgatg aaccttctgc      4920
     aaagcttcct ctcggagcga acgtttcagg tgtcgttggg tggttacacg tccagtgaac      4980
     acaagctgga aaatggtgtg ccgcagggat cagtgttatc cgtaacgctg ttcctggtgg      5040
     cgatgcagcc catcttccgg gtactgccgg atggagttga catactcctg tacgccgacg      5100
     acatcctcct cgtcgttaaa agggctaaaa gcgaagggct acacacgaaa ttgcaggccg      5160
     ccgtgaaggc tgtatgtaaa tgggcgaaga gtgtcggctt cgcaatgtct gctgccaagt      5220
     cgcatgtgtt ctactgcagc ccgaatgcgc gtcgggagcc ggcgcggaac gtcatcgttg      5280
     atcaagtctc cgtcccgaaa accaaccggc tgagggttct aggtgtcact ctggatcgca      5340
     ccttgacatt caaaccgcat tgcaaaatgg tgaagaaagc atgtgagtca cgtctgagaa      5400
     tactccagat gatcggagcc aaactaccgc gaggcaatcg gacaagtctg ctgcaagtcg      5460
     gatcggcgtt agtaactgca aaactgacgt acggtatcgg attggtgagc cgaggaggac      5520
     cagcaacatt gcagaccctc gctccggcat ataacaaaat ggttcggtat gcttctggag      5580
     cgtttgtcac cagcccgata atttcggtca tggccgaagc gggcacctta ccgtttgagc      5640
     tgctggcggt tcagtgcgta gcgaggacag ccatccgcat tctagcgaag aacagtcgaa      5700
     acaacactct tcccttgatt cggcgcgctt cggatcgttt ggaggaactc acaggcacgg      5760
     cactccctgc tgtcggtcaa cttgtgagac aaggcgatcg tgcttggaac gaacggaaac      5820
     cctcgattgt gtgggacgtg aagaggagta ttcgagccgg tgacccaccg gagaaagtcc      5880
     gcccagtcgt ccagcaactt ctgtcgaccc gcttccgcaa ctcgaccgtc gtctacaccg      5940
     atggttcgaa gtgtgaagac acggtaggag ccgcttttta caacaatggc atctccggaa      6000
     cgtttagtct accgaaggag tgcagcgttt tctctgcaga agcgtatgcg atcaagaaag      6060
     cggtttcaat cccaaacatc cggaacgagg tggtgatcct aacggattcg gcgagttgcc      6120
     tgcaggcctt ggaggcagga tcttccaaac acccgtggat tcaagagatc gagcacattg      6180
     tgcgaaacaa aaatgtacgg ttctgctgga tcccgggaca tgctggcata accggcaata      6240
     atgaagccga tcgcttggcc aacgcggcta gacagcaacc ggctatcgac actcctatcc      6300
     ccggcgaaga tgctctgaga gcgacgaaag aagccatacg gtgccgatgg gatcgccaat      6360
     ggtttgcaat tagagacaac aagttgaggg agatcaagca cgatacgaag aggtggacag      6420
     aacgtggcaa tgcggccgac caacgcgtgc taacgagatt gagaatcgga cacacccgtc      6480
     tcacacacac ttttctcctg aaaaaggaat ctccgcccac ttgcgaatgt tgcggaacgt      6540
     cgcttgatgt gcggcatctc attctgcact gcagaaaata tgagcaggaa agaagaaaat      6600
     acgatatcga cacgctcagc ctgaaggaag ccttggacga taccaaagag agaacgaaaa      6660
     gctgttgaag tatctacacg atacaggact gtacgggaaa ctgtgaaatg aaatgtgtat      6720
     gtgaaacgtg aatttgtaaa taaatagatt aagtttcttt ttccccgaca cgaatgcacc      6780
     cttctggtgt aaagtgtcac taataaacaa aaaaaaaaaa aaa                        6823
//
ID   I_Ele43B_AAe repbase;    DNA;    INV; 6831 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele43B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6831
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1353-1353 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >97%
CC   identity.
CC   The consensus is ~83% identical to I_Ele43.
XX
FH   Key           Location/Qualifiers
FT   CDS           558..1841
FT                 /product="I_Ele43B_AAe_1p"
FT                 /translation="MAAASSGDPGGSAKRRLPEFMDPTNQFGELTFLQLSG
FT                 KNGTPLPINPYITGKSVEACAGGPIESAKTEAQGTKYTLRVRDPAQVAKLL
FT                 KLTKLIDGTEVEVVPHPNLNVSRCVISCFDLIQMEEKDILTEMISQKVIRV
FT                 QRITRNESGKRVNTPALILTFCKTTYPEYIKVGLLRVATRPYFPNPMLCYG
FT                 CFSYGHTRVRCPGPQRCANCAQNFHGEECGEAPSCRNCKGDHRSTNRQCPV
FT                 YKKEVEVIKVKVSENLSFPEARKRVEQQSGSYAQVAAQQSVFEKKLKELEA
FT                 AMLQKDKEIARLQEDNKKKEERIEQMMAFIKQVKQQSNPERVHHVSETAEK
FT                 PRHSREQRVAQSTAGPMTRSRNNSPAVQETKRGRPPKFVYPKPASSPDISP
FT                 PPKKTAPTTHDLTQMEYSGEESEVSETPPNQRLR"
FT   CDS           1777..6711
FT                 /product="I_Ele43B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="LRWSIPAKSLRYRRHPLTSVFDNPTLEQRSKYNEDPR
FT                 TNTDNETFRFGSRESVVPLPTQVRQDEGVXRDVLPQPVDDEFTSVADGIPH
FT                 DTTTLQTHRVTIHTVPISSNSIETNNENTDDTTQSLSPVPAIAGVSGSSRV
FT                 VVSAMAGTVGQDVPQVSLLNSQPQTGTAAPAFFSDAHHTTPTAANPNQQQP
FT                 TSTNRLAINNRTEETTQSLSPVPAIAGGSGISRVVVSAMAGTVGQDVPQVS
FT                 FRLSLPQSGTAAPAIFSGTHQTTPTTVNLDRHQPASTNRLANNNHFTDDTT
FT                 QSLSPVPAVAGVSGSNRVVVSATAGTVGQDVPQVSLSTLPPQTVAAAPDYL
FT                 SGHIASPLSPGEGPSRVHRRNITQSASPVPAVVGIGRTSVMVSTAAGTVGQ
FT                 SVPQASDRLVFSPTEATALPLSPTTDPPXRRTSTSSSTTRSATDSRSGSCF
FT                 ALQWNIRGLRANISELKLLISNLEPCVIALQETKVNQTVVPPDFVGRNYTL
FT                 LLXSTNVNYWQHGVGLAIREGIPFERVQIDTSLHIVAARLHAPIQVTVVSV
FT                 YIPPSSAQCQAALSELLEQLEGPVLLLGDFNAHHLAWGSHQSTALGRFIAE
FT                 TTLDKQLVILNDGSPTRIDPTTGNTSAIDVSICTESLACRFTWRTLSDTHN
FT                 SDHFPIIVSIPGWCSPRTTRQKWLYDQADWSMYERITIETIDADVEWDVPS
FT                 FTEKILAAAKKSIPRTSGRSGPKSVPWWCPEAKAAIRRRRKCLRALRRLQQ
FT                 TDSNQPEALAEFQEARAAARRAVKEAKEKSWEXFVAKISPNSTTTELWRTV
FT                 NTLRGNRQQRPVVLKRASGFTDNPNDAAEELAKYYSERSATSSYPPSFQMA
FT                 KAAAELESTDFSHNTGDVYNIDITLAELLWALDKGRGVSTGPDSIGYPLLQ
FT                 RLPVSVKMTLLNLLNKIWRSGEFPTSWRNAVVIPIPKPNCQDSGPAAFRPI
FT                 SLTSCMSKLFERIINRRLITELESSGRLDKRQHAFRAGRGTDTYFAELERS
FT                 LPITDEHCLIASLDLSKAYDTTWRHGILRTLKSWRIRGRMFNTLKSFLSER
FT                 TFQVSVDGHLSREHDLENGVPQGSVLSVTLFLVAMQPIFRVLPKGVEILLY
FT                 ADDILLAVRGPKSANVHRKLQAAVKAVDKWAKSVGFAISATKSHTFYCSPN
FT                 ARREPANEIQIDRTSVPKTNRLRILGITLDRTLSFKPHCQMVKKSCESRLR
FT                 ILQMIGAKLPRGNRSTLLQVGSALVTAKLIYGIGLVSRGGPTTLQTLAPAY
FT                 NKMIRYASGAFVTSPTSSVMAEAGALPFEFLATQSTARTAIRILAKNRNNS
FT                 TLPLIQRTSDRLEEITGSALPAVDQLVRQSDRLWHTRKPSVVWDVKNTVRA
FT                 GDPPEKVRPVVQQLLSTRFQNSTIVYTDGSKLNDMVGSAFYLNGLVGMYSL
FT                 PNQCSVFSAEAYALKMAVSIPNLSTELVVLTDSASCLLALEGGKSKHPWIQ
FT                 QVEHIAKNKPIRFCWIPGHAGISGNVEADRLAGEARGQPANNIAIPGEDAL
FT                 RAMKQGIRQRWNRQWYESRDSKLREIKNDTHRWADYGSAADQRILTRLRIG
FT                 HTRLTHTFLLKKEAPPTCECCGSVLDVRHLILECRKFDRQRQDNGISSTNL
FT                 QEALTNEEINMKKVLKFLHDTGLYTKL"
XX
SQ   Sequence 6831 BP; 1895 A; 1812 C; 1647 G; 1454 T; 23 other;
     cagatcgttc cgacacactg tgttgaccgg ttgkctccgt gcacgcgttc ggcwtaaacc        60
     aggtgttttt ccgagttttt cgcggttttc gcgatcgmaa cgcgtgtkaa tctgtggttg       120
     cggtggtgaa gaakaagwgg atagtgaagg tttggtgaaa atcggtgttg tagcggccga       180
     aaacggcgaw aaaaagtggc acccacgtgc tttgaaacgg ccaaacaaat cgccgtcagc       240
     cggctccccg gccgttctca ttcaccwttc ggtggtgcac agtgtgcttg aattgttttt       300
     cgctgaaaaa aaaaaaaagt gtcgaaagtt tgggaagtaa gtggaattga gaaagtgagc       360
     gatccwcatc agggattcac tacagtagtg tccagtagtg cctacagtgc ggcacaaaat       420
     tttgggaacg cctggccatc gctttctacg accgaggata aaakaaggta ggatctttcc       480
     ttttactttt ctttcgtcaa tttggggtag gtaacgggtg accgttgcca gtggaagtgt       540
     tttccactta aaacaacatg gcggccgcta gtagcggcga cccagggggg tccgccaaac       600
     gtagattacc agaatttatg gatccaacga accaatttgg cgaattgacg ttcctccagc       660
     tgtctggaaa aaacggaact ccgcttccga tcaacccgta cattaccggg aaatcggttg       720
     aggcatgtgc cggcggccca attgagagcg cgaagaccga agcgcagggt acmaagtaca       780
     ctctgmgagt tcgsgaccca gcccaagtwg ccaagttgct kaagctgacg aagctaattg       840
     acggaaccga ggtagaggtt gtccctcacc ccaatctaaa tgtaagtagg tgtgtcatct       900
     cgtgcttcga cctcattcag atggaggaaa aggacattct gackgagatg atcagccaga       960
     aggttattcg ggtacagcgt atcacccgaa atgaaagcgg aaaaagggtc aatacaccgg      1020
     cactgatcct tactttctgt aagaccactt acccggagta catcaaagtt ggcttgctgc      1080
     gcgttgctac tcgcccctac tttccgaacc cgatgctttg ctacggttgc ttcagttacg      1140
     ggcacactcg tgtgcgctgc cctggaccgc aacgttgtgc caactgcgcg cagaacttcc      1200
     acggggaaga atgcggtgaa gccccgtcgt gccgtaactg caagggtgac catcggtcga      1260
     ccaatcgcca gtgcccwgtg tataaaaaag aggttgaagt gatcaaggtg aaagtgagcg      1320
     aaaacctgag tttccccgaa gcgagaaaac gagtggaaca acaatccggt agttacgccc      1380
     aagtagccgc ccaacaaagc gtgttcgaga agaagctgaa ggagctggaa gcggccatgc      1440
     tccaaaagga taaggaaatc gccaggttac aggaagacaa taaaaagaaa gaggagagga      1500
     tcgagcagat gatggctttc atcaagcagg tcaagcagca gtctaaccca gagagagtgc      1560
     atcatgtgag cgaaaccgct gagaagcccc gccacagccg agagcaacga gtggcccagt      1620
     cgacggctgg cccgatgaca cgctcaagga acaactcccc ggccgttcag gagaccaagc      1680
     gcggaagacc tccaaaattc gtttatccca aaccagcctc ctcgccagac atcagcccgc      1740
     ccccaaagaa gaccgcaccc accacccatg acctgactca gatggagtat tccggcgaag      1800
     agtctgaggt atcggagaca ccccctaacc agcgtcttcg ataaccccac tcttgaacaa      1860
     cgttcgaaat acaacgaaga ccctcgcacg aacacggaca acgagacttt tcggttcgga      1920
     agtagggaaa gtgtagtacc tcttccgacg caagtacggc aggatgaagg agtcwtccgg      1980
     gacgtcttac cccaacccgt tgatgacgag ttcacctccg tagccgatgg aatcccacac      2040
     gacaccacga cattgcaaac ccaccgagtt accatccaca ccgtaccaat atcaagcaac      2100
     agcatcgaaa ccaacaacga gaacaccgac gatactacac aaagtctttc cccagtgcca      2160
     gctattgccg gtgtttctgg aagcagtcgt gtagtagttt cggcaatggc tggcactgtg      2220
     gggcaagacg tcccacaggt cagtcttttg aattctcaac cacaaacagg tactgccgcg      2280
     cctgcattct tttcagatgc ccaccatacc acaccaaccg cagcaaatcc caatcaacag      2340
     caaccaacat caaccaatcg tctcgctatc aacaaccgca ccgaagaaac tacacaaagt      2400
     ctttccccag tgccggctat tgccggtggt tcaggaatca gtcgtgtagt tgtttcggca      2460
     atggctggca ctgtgggaca agacgtccca caggtcagtt ttcgcttatc cctacctcaa      2520
     tcaggtactg ccgcgcctgc aatattttca ggcacccatc aaaccacacc aaccacagtg      2580
     aatctcgatc gacatcaacc agcatcaacc aatcgcctcg ccaacaacaa ccatttcacc      2640
     gacgatacta cacaaagcct ttccccagtg ccggctgttg ccggtgtttc tggaagcaat      2700
     cgtgtagtag tttcggcaac ggctggcact gtgggacaag acgtcccaca ggtcagtctc      2760
     tctactttac caccgcaaac agttgctgct gcgcccgatt atctttcagg acacatcgca      2820
     tcacccctat ctcccggaga aggcccttcg agagttcacc gcagaaacat tacacaaagc      2880
     gcttccccag tgccggctgt tgtcggtatt ggcagaacta gtgtaatggt ttcgacagca      2940
     gctggtactg tgggacaaag cgtcccacag gcaagtgaca gactagtttt ttcaccgaca      3000
     gaggctaccg cactccctct ctctcccaca acagacccgc cgawccgaag aacatcaacc      3060
     tcgtcatcca ccacacgatc agctacggat agtcgctctg gtagctgctt cgctctccag      3120
     tggaatatcc gtggtcttag ggctaacatt agcgagctaa agctgctcat ctccaacctc      3180
     gaaccatgtg ttatagcctt gcaggagacc aaggtgaatc aaactgtcgt tccgccagac      3240
     ttcgttggca gaaactatac actgctacta magtcgacga acgtcaacta ctggcaacac      3300
     ggtgtaggcc ttgccatccg agaaggtata ccattcgaac gtgtgcaaat cgatacctct      3360
     ctacatatcg ttgctgctcg ccttcacgcg ccgatccagg ttaccgttgt gtcggtatac      3420
     attccgccga gttcagctca gtgtcaggca gcattgagtg aacttctcga gcagttagaa      3480
     ggtccagttc ttcttctcgg tgactttaat gcccaccatc tcgcatgggg gtctcaccag      3540
     tcaaccgcgc ttggccgatt tatagccgaa acaacgttgg acaaacaact agtgatcctg      3600
     aatgacggct cccctactcg tatcgatccg actacgggaa atacctcggc aatcgatgta      3660
     tctatctgca ctgagagtct ggcatgtagg ttcacttggc gtaccctgtc agatacacac      3720
     aatagcgacc acttcccgat aatcgtttcc atacccggat ggtgcagtcc acgaacgact      3780
     cggcaaaagt ggctctacga ccaagcagat tggtcgatgt acgaacgtat cacaatcgaa      3840
     accatcgacg cagatgttga gtgggatgtt cctagtttca ccgaaaaaat attagcagca      3900
     gcgaagaagt ctatcccacg aaccagtggc cgaagcggac cgaagtcagt gccgtggtgg      3960
     tgccccgagg caaaggcagc cattcgacgg cgacgaaaat gtcttcgagc actccgacgc      4020
     cttcagcaga cggactcaaa ccaacccgag gctttggcag aattccagga agctagagca      4080
     gcggcacgaa gagcggtcaa agaagcgaag gagaaatcat gggaagawtt cgtagcgaaa      4140
     atttccccaa acagcacgac gaccgaactg tggcgaacgg tcaacacatt gcgtggcaac      4200
     cgacaacagc gaccggttgt actgaagcgg gctagcgggt ttacggacaa tccgaatgat      4260
     gcagcggaag aactagcgaa gtactacagc gagagatcgg cgacttcaag ctaccctcca      4320
     tcgttccaga tggcgaaagc ggcagctgaa ctagagtcca cagatttttc gcataacacc      4380
     ggcgatgtat ataacatcga tataacccta gccgaacttc tgtgggctct cgacaaaggg      4440
     cgaggtgtct caacaggtcc cgattcaata gggtatccct tgcttcaacg gcttcccgtt      4500
     tccgtgaaaa tgacgctatt gaatcttctc aacaaaatct ggcgaagcgg tgaattcccc      4560
     accagctggc gaaacgcagt cgtcattccc atccctaagc caaattgtca agactccgga      4620
     cctgctgcat tccgaccaat ttcactcaca agttgcatgt ccaagctttt cgagcgaatt      4680
     ataaatcgtc gcttgattac cgaactggag tcaagtgggc gacttgacaa gcgtcaacat      4740
     gctttccgtg ctggacgtgg caccgacact tactttgcgg agctagagag gtcacttccg      4800
     atcactgatg agcactgtct aatagcgtct ttggatttat cgaaggcata cgatacgacc      4860
     tggcgccacg gcatactacg cacattgaag tcttggcgta tacgtggcag gatgttcaac      4920
     acgctaaaaa gttttctctc tgaacggacc ttccaggtgt ctgtggatgg acacttgtct      4980
     cgtgagcacg atctggaaaa cggagtaccg cagggctcgg tactatccgt gacgcttttc      5040
     ttagtcgcaa tgcaacccat ctttcgggta ctaccgaaag gtgttgaaat acttttgtac      5100
     gctgatgaca tccttctcgc agtacgagga ccgaaatctg ccaacgtcca ccgaaaactg      5160
     caggccgccg tcaaggctgt cgacaaatgg gcgaaaagcg tgggcttcgc catatctgcg      5220
     acgaagtcac atacttttta ttgcagccca aatgcacgtc gagaaccagc gaacgaaatc      5280
     caaatcgatc gcacatcagt acctaaaacc aaccgtttaa gaattctggg tatcactctt      5340
     gaccgaacac tatcgttcaa accccattgt caaatggtta aaaaatcttg cgagtcccgt      5400
     cttcggatac ttcaaatgat tggggctaaa ctcccaagag ggaaccgatc aactctttta      5460
     caagttggtt cagcgctagt cactgcgaag ttgatctacg gaataggact ggtgagccga      5520
     ggaggaccaa caacgctgca aaccctcgcc ccggcataca acaaaatgat cagatacgct      5580
     tccggagctt ttgtgacgag tccgacaagt tcggtcatgg ccgaagcggg tgctttgcca      5640
     tttgaatttt tggcaacgca atccacagcg cggacggcca ttcgaatact ggcgaaaaat      5700
     cgtaacaaca gcactctccc gctgattcag cgaacatcag accgtctgga agaaataacg      5760
     ggatcagcac ttcccgctgt tgaccaactc gtaaggcaga gcgatcgcct atggcacaca      5820
     cgaaagccat cagttgtatg ggatgtwaaa aatactgtcc gtgccggcga tccgccggag      5880
     aaagtccgcc ccgtggtaca gcaactgctc tctactcgtt ttcaaaactc gactatcgta      5940
     tacaccgacg gctccaaact aaacgacatg gtagggtccg ctttttactt gaatggcctt      6000
     gtaggaatgt atagccttcc aaatcaatgt agcgtcttct ctgcggaggc gtacgccctt      6060
     aagatggcgg tttcgatccc aaaccttagt acggagctwg tggtattaac ggactctgcc      6120
     agctgtcttt tagctttaga aggggggaaa tccaaacatc cctggattca gcaagtcgag      6180
     catatagcca agaacaaacc gattcgattt tgctggattc caggacacgc tggtatcagc      6240
     gggaatgtgg aagccgatcg actagcgggt gaggctagag gacaaccagc aaacaatatt      6300
     gcaataccag gagaggacgc tctgagagcg atgaagcaag gtatacggca acggtggaat      6360
     aggcagtggt acgaatccag agactcgaag ttacgagaaa ttaagaacga tacgcacaga      6420
     tgggcagatt acggaagcgc agccgatcaa cgaatactaa cacggctccg aatcggccac      6480
     acacggctaa cccatacctt cttactaaag aaagaagcac caccaacatg cgaatgctgc      6540
     ggatcagtgc tcgatgtacg gcatttgatc cttgaatgta gaaaattcga cagacaacga      6600
     caagacaatg gcattagctc aacaaattta caagaagcat taacgaatga agaaattaac      6660
     atgaaaaagg ttttaaagtt ccttcatgac acaggattat atacaaaatt atagagttac      6720
     tgttaaaact agtgaactga attgtatcag aatgtaacac actttccaaa cgacacgaat      6780
     gcaccctttt ggtgtcaagt gtcgaaaata aacaaacaaa caaacaacaa a               6831
//
ID   I_Ele43C_AAe repbase;    DNA;    INV; 6593 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An I non-LTR retrotransposon from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele43C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6593
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1354-1354 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
CC   The consensus is ~80% identical to I_Ele43 and I_Ele43B_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..1866
FT                 /product="I_Ele43C_AAe_1p"
FT                 /translation="MAAASSGDPGGSVKRRLPEYMDPTNQFGELTFLQLSG
FT                 KNGIPLPINPFITGKSVEACAGGSIESAKSEAQGSKYTLRVRDPAQVAKLL
FT                 KLTKLIDGTEVEVIPHPNLNVSRCVISCIDLIQMEEKDILQEMISEKVIRV
FT                 QRITRNEGGRRVNTPALILTFCKTTYPEYLKVGLLRVPTRPYFPNPMLCYG
FT                 CFSYGHTRVRCPGPQRCANCSQNFHGEECSEAPSCRNCKGDHRSTSRQCSV
FT                 YKKEVEVIKLKVSENLSFPEARKRVEQQGGSYAQVAAQQNVFEKKLKELEV
FT                 AMLAKDKEIAKLHEEGKRKDERIEQMMAFIKQVKQQSSQERTHHVSETVVV
FT                 EKPRHSREQRVVQSTAGPMTRSRNNSPAVQETKRGRPSKFVYPKSATSPDT
FT                 SPPPKKTAPTTHDLTQMEYSGEESEVSETPPNQRLR"
FT   CDS           1802..6481
FT                 /product="I_Ele43C_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="LRWSIPAKSLRYRRHPLTSVFDNPTLEQRSEYNDDPR
FT                 TKTDNETFRFGSRESVVPLPTQVRQAEGVIRDVLPQPVDDEFTSVADGIPH
FT                 DTTILQNHRGTIHSVPTSSNSIETNNENTDDTTQSLSPVPAIAGVSGSSRV
FT                 VVSAMAGTVGQDVPQVSLINSQPQTGTAAPAIFSDTHQTTSTAANPNRYQP
FT                 ASTYHLVFNNHLSDDTTQSLSPVPAVAGVSGSNRVVVSAMAGTVGQDVPQV
FT                 SLSKFPSQTVAAAPDYLSGYTASPPSPGEGPSSVHRRNITQSASPVPAVVG
FT                 IGRTSVMVSTAAGTVGQSVPQASDSLVLSSSEVTALPLSPTTDPPIRRTST
FT                 SSSTTRSTTDSRSGYCFALQWNIRGLRANISELKLLISDLEPCVVALQETK
FT                 VNQTVVPPDFVGRNYTLLLQSRNANYWQHGVGLAIREGIPFERLQIDTTLH
FT                 LVAARIFAPIQMTVVSVYIPPSAVHCQTALGDLLEYLEGPVLLLGDFNAHH
FT                 LAWGSHQSNALGRFVAETTLDKQLVILNDGSSTRIDPATGKTSAIDVSICS
FT                 ESLARKFTWRTLSDTHNSDHFPITVCIPGWSNRRTTRQKWLYDQADWPLYE
FT                 RLIAETIRPDVEWDVESFTEKIIAAAKKSIPRSSGRVGPKAVPWWCPEVKA
FT                 AIRQRRKCLRSLRRLQQRDPNQPEALASFQEAKAEAKKAVTQAKQQSWEDF
FT                 VAKISPSSTTTELWNTVNTLRGNRRQRPVVLKKSNGFTDNPEEAAEELAKY
FT                 YSERSATSSYPPSFQMAKSAAERESMDFSPNTGDVYNIDITLAELLWALDK
FT                 GRGSSTGDDSIGYPLLQRLPLSVKMTLLEVFNGIWRSGEFPASWRNAIVVP
FT                 IPKPNCQDSGPAAFRPISLTSCMAKLFERIINRRLITELESSGRLDKRQHA
FT                 FRTGRGTDTYFAELERSLPNIDEHCLIASLDLSKAYDTTWRHGIVRTLKSW
FT                 RIRGRMINILKSFLSERTFQVSVGGHLSPQHQLENGVPQGSVLSVTLFLVA
FT                 MQPIFRIIPAGVEVLLYADDILLVVRGAKTEGLHRKLQAAVKAVDKWAKSV
FT                 GFGISATKSNCFYCSPNARREPAKEITIDRTAVPRTNRLRILGITLDRTLT
FT                 FKPHCTTVKKACESRLRILQMIGAKLPRGNRSSLLQVGSALVTSKLIYGIG
FT                 LVSRGGPASLQILAPAYNKMVRYASGAFVTSPINSVMAEVGTLPFDLLAAQ
FT                 STARTAIRIAAKSSDNNNLPLIRRISDRLVELTGTALPNVSHLVRQSAREW
FT                 HARKPTIVWDVKRSIRAGDPTEKVRPVVQHLLSTRFHQSTVVYTDGSKSQN
FT                 TVGAAWHTTGLAGLYSLPEQCSVFSAEAYALKMAISIPNVPRELVILTDSA
FT                 SCLQALEAGKSKHPWIQEIERTARTKSIRFCWIPGHAGISGNSEADRLANE
FT                 ARRQPVIDTPLPGEDALRAVKQLIRCKWDDQWFNTRDSKLREVKQDTLRWT
FT                 ELGSAADQRVLTRLRIGHTRLTHTFLLKREPPPTCECCGTTVDVRHLILQC
FT                 RKYEREREQNNVSTTSLRDALANEEEATKNLLKFLHETGLYKKL"
XX
SQ   Sequence 6593 BP; 1781 A; 1705 C; 1667 G; 1438 T; 2 other;
     caggttcgtg gacacaccgt gttgaccgca tctcttcgtg tgcgctctct agttaactcg        60
     gtgaattttc caagttttcc gcggtttccg cgaacaaaac gtgtgtgaat cggttgttcc       120
     ggtgataaag acaaattgtg cagtgaaggt ttggtggaaa tcggtggtga aacggccgaa       180
     aacggcgaaa acaagtgcaa tccacgtgcc tcgaacggca aaacaaatcg ccgtcagccg       240
     gctccccggc tgatttcatt caacgtctta gtagtgtggg acgtggaaca cggtgtgcca       300
     gaaggcagtc gtttcgaaaa ataaaaaaaa gtgcggaaaa gttttggggg ttttttgaaa       360
     ttattgaaag tggttaattg gtagcttgag cgaattacag tgcgtatcgt gtgagtgtgc       420
     ttacagtgcg gcacataatt atctgaacgc ccgattattt tcccacgttg aaggagtaaa       480
     gaaggtagga tctctcctct ttttatcttt tttgctcatt tggggtaggt aacgggtgac       540
     cgttgccagt gggagtaagt tccgacgtga ggaaacatgg cggccgctag tagcggcgac       600
     ccaggtgggt ccgttaaacg cagacttccg gaatatatgg acccaacgaa ccaatttggt       660
     gagttgacgt tcctccagct gtccggaaag aacggaattc cacttccgat caacccgttc       720
     attaccggaa aatcggtaga ggcatgcgca ggtggttcaa ttgagagcgc gaagtccgaa       780
     gcgcagggtt cgaaatacac tctgcgagtt cgagacccag ctcaagtcgc caagctgctt       840
     aagctaacaa agctaattga cggaaccgag gtggaagtta tccctcatcc gaatttaaat       900
     gtcagtaggt gtgtcatctc ctgcatcgat ttgatccaaa tggaggaaaa ggacatccta       960
     caggaaatga ttagcgagaa ggtcatccgt gtgcaacgga tcacccgtaa cgaaggaggc      1020
     agaagggtga atactccggc gttgatcctt actttctgta agacaacgta tccggaatat      1080
     ctgaaagtcg gcttactacg cgttcccacc cgtccctatt ttcctaaccc aatgttgtgc      1140
     tacggctgct tcagctacgg tcacactcgc gttcgttgtc ctggcccaca acgctgtgcg      1200
     aattgctcgc agaacttcca tggggaagaa tgcagtgaag ctccgtcgtg ccgaaactgc      1260
     aaaggtgacc atcgttcaac aagtcgtcaa tgttcggtgt ataagaaaga agtggaagtg      1320
     atcaaactaa aagtgagcga aaacttgagt ttcccggagg ccagaaaacg cgtggaacag      1380
     caaggaggta gttacgccca ggtagctgca caacagaacg tctttgaaaa aaagctgaag      1440
     gagttggaag tggctatgtt ggcgaaggat aaggagatag cgaagctgca cgaggaaggt      1500
     aaacggaagg atgaaaggat cgagcagatg atggctttca tcaagcaagt caaacaacaa      1560
     tcgagccaag agagaaccca ccacgtgagt gaaaccgtcg tcgttgagaa gccccgccac      1620
     agccgagagc aacgagtggt ccagtcgacg gctggtccaa tgacacggtc aagaaacaac      1680
     tccccggccg ttcaggagac aaagcgcgga agaccttcaa aattcgtcta ccccaaatca      1740
     gccacctcgc cagacaccag cccgcctccg aagaagaccg cacccactac tcatgaccta      1800
     actcagatgg agtattccgg cgaagagtct gaggtatcgg agacaccccc taaccagcgt      1860
     cttcgataac cccactctcg aacaacgctc ggaatacaac gacgaccctc gcacaaaaac      1920
     ggacaacgag acttttcggt tcggaagtag ggaaagtgta gtacctcttc cgacgcaagt      1980
     acggcaggct gaaggagtca tccgggacgt cttaccccaa cccgttgatg atgagttcac      2040
     ctccgtagcc gatggaatcc cacacgacac cacgatattg cagaaccacc gaggtaccat      2100
     tcactctgta ccaacatcaa gcaacagcat cgaaaccaac aacgagaaca ccgacgatac      2160
     tacacaaagt ctttccccag tgccggctat tgccggtgtt tctggaagca gtcgtgtagt      2220
     agtttcggca atggctggca ctgtggggca agacgtccca caggtcagtc ttataaattc      2280
     tcaaccacaa acaggtactg ccgcgcctgc aatcttttca gacacccacc aaaccacatc      2340
     aaccgctgca aatcccaatc gataccaacc agcatcaacc taccacctcg ttttcaacaa      2400
     ccacctctcc gacgatacta cacaaagtct ttccccagtg ccggctgttg ccggtgtttc      2460
     tggaagcaat cgtgtagtag tttcggcaat ggctggcact gtgggacaag acgtcccaca      2520
     ggtcagtcta tctaaattcc catcgcaaac ggttgctgct gcgcctgatt atctttcagg      2580
     gtacaccgca tcaccaccat ctcccggaga aggcccttcg agtgttcatc gcagaaacat      2640
     tacacaaagc gcttccccag tgccggctgt tgtcggtatt ggcagaacta gtgtaatggt      2700
     ttcgacagca gctggtactg tgggacaaag cgtcccacag gcaagtgaca gtttggttct      2760
     ttcgtcgtca gaggttaccg cactccctct ttctcccaca acagacccac cgatccgaag      2820
     aacatcaacc tcgtcatcca ccacacgatc aaccacggat agccgttccg ggtactgctt      2880
     cgccctccag tggaatatcc gtggtctacg sgccaacatc agcgagctaa agctkctcat      2940
     ctccgacctc gaaccgtgtg ttgtagcttt gcaggagacc aaggtgaacc agactgttgt      3000
     tccgccagac ttcgtcggta gaaactatac gttgctgcta cagtcgagga acgctaacta      3060
     ctggcaacat ggtgtaggcc ttgctatccg ggaaggcata cctttcgagc gtttacaaat      3120
     cgacaccacc ttgcacctcg tcgctgcacg catcttcgca cctatccaaa tgaccgtggt      3180
     ctcggtgtac atcccaccga gtgcagtcca ttgtcagacc gcattgggag atctgttaga      3240
     gtatctagag ggtccggttc ttcttctcgg ggatttcaac gcgcaccatc tcgcgtgggg      3300
     ctctcaccag tcaaacgcgc ttggccgatt cgttgccgaa acaacgttgg acaaacaact      3360
     ggtgatcctg aatgacggct cctccactcg tatcgacccg gcaacgggta aaacctcagc      3420
     aattgacgtg tccatctgtt ctgagagtct ggcgcgaaag ttcacgtggc ggaccttgtc      3480
     cgacacacac aacagcgacc actttccgat aacggtgtgc atccccggat ggtccaatcg      3540
     tcgaacaaca cgacagaagt ggctgtacga ccaagctgat tggccgttat acgaacgcct      3600
     catagcggaa accattcgcc cagatgtcga gtgggacgta gaaagcttca ctgagaagat      3660
     aattgcagca gcgaaaaagt ctatccctcg ttccagtggc cgtgttggac cgaaagcggt      3720
     accttggtgg tgccctgagg taaaagcggc aattcgccag cggagaaaat gtttgcgatc      3780
     ccttcgacgc cttcaacagc gcgatccaaa tcaacccgaa gcattggcga gcttccagga      3840
     agctaaagca gaggcgaaaa aagcggtcac ccaagcaaag cagcaatcgt gggaagattt      3900
     cgtggcaaaa atatcaccca gcagcacgac gaccgaactg tggaatacag ttaatacatt      3960
     gcgtggcaac cgacgacagc gaccggtggt acttaagaag tcgaacggat ttacagacaa      4020
     tcctgaagaa gcagcggaag aactggcgaa gtattacagc gagagatcgg cgacttcaag      4080
     ctatcctcca tcgttccaga tggcgaaatc ggcagctgaa cgggagtcca tggatttttc      4140
     gcccaacacc ggcgatgtgt ataacatcga catcacccta gccgaacttc tgtgggctct      4200
     cgacaaaggg cgaggctcct caacagggga tgattctata gggtaccctc ttcttcaacg      4260
     tctccctctg tctgtgaaga tgacgcttct tgaggtcttc aatggaatct ggcgaagtgg      4320
     cgagttccct gccagctggc ggaatgctat cgtcgttccc atcccgaaac ctaactgcca      4380
     ggattccgga ccggctgcct tccggccaat atcgctcacc agctgcatgg cgaagctttt      4440
     cgagcgtata atcaatcgtc gtttaattac agaattagag tcgagcggtc gacttgacaa      4500
     gcgccagcac gcctttcgta caggacgtgg caccgacacc tactttgccg agctggagag      4560
     atcgcttcca aatatcgacg aacactgcct catagcctcc ttagatctgt cgaaggcgta      4620
     tgatacgacc tggcggcacg ggattgttcg cactttaaag tcatggcgaa tacgtggtcg      4680
     aatgataaac atccttaaaa gttttctctc tgagcggacg tttcaggtgt ctgtaggagg      4740
     acatttgtcc ccccaacacc agcttgagaa tggggtacca cagggttccg tgttatccgt      4800
     aacactgttc ctcgtcgcga tgcaacccat cttccgaatc ataccggcgg gtgtagaagt      4860
     tcttttgtat gctgacgaca ttctcctcgt tgtacgcgga gcgaaaaccg aaggattgca      4920
     ccgaaaacta caggccgctg tgaaagcggt tgacaagtgg gcaaagagcg taggtttcgg      4980
     tatatctgcg acaaagtcga attgctttta ttgcagtccg aatgcgcgtc gagaaccggc      5040
     aaaagagata actatcgatc gaacagccgt tccgaggacc aatcgtctga gaatcttagg      5100
     cattaccctg gatcggacac ttacatttaa gccccactgc acaacggtaa agaaagcgtg      5160
     cgagtcgcga ttacgtatac tgcaaatgat cggtgccaaa ttgccccgtg gaaatcgttc      5220
     ttccctgctg caggttggat cggcactggt cacctctaag ctgatctacg ggatcggact      5280
     ggtaagtcga ggaggaccag catctctaca gatactcgcc ccggcgtaca acaaaatggt      5340
     ccggtatgct tccggagcgt tcgtgaccag tccaatcaac tcagtcatgg ctgaagtggg      5400
     tactttaccg ttcgaccttc tggcggcaca gtctacagcg cggacggcca ttcgaatcgc      5460
     agcaaaaagt tctgataaca acaaccttcc tcttatccgc cgtatatcag accgtttggt      5520
     tgaacttacg ggaacagcgc ttcctaatgt cagccacctt gtacgacaga gcgcccgcga      5580
     gtggcatgcg cgaaaaccga cgatagtttg ggatgttaag aggagcatta gagccggtga      5640
     cccaacggaa aaagtccgcc cggttgtgca acatctgctt tcgacgcgct tccatcaatc      5700
     gaccgtggta tacaccgatg gttccaagtc ccagaacacg gtaggtgctg cttggcatac      5760
     tacaggtctg gctggtttgt acagtttacc ggagcagtgt agtgtctttt ccgcagaagc      5820
     ctacgcctta aaaatggcaa tctcaattcc gaacgtacct agagagttgg tgatccttac      5880
     ggattcggca agttgcctcc aagcgctgga ggcgggtaaa tccaagcacc cctggattca      5940
     ggaaattgag cgaacagcaa ggaccaagtc gatcagattc tgctggatcc ctggacatgc      6000
     aggtatcagc ggcaacagcg aagccgaccg actagccaat gaggctagga ggcaaccggt      6060
     catcgatacc cccctaccag gagaggacgc attgagagct gtcaagcagc taatacggtg      6120
     caaatgggat gaccagtggt tcaacactcg tgattcgaag cttcgggaag tgaagcaaga      6180
     tacgcttcgt tggacggaac tcggaagcgc agccgaccag cgtgtgctta cacggctaag      6240
     gatcggtcat acgcggctta cccatacatt tttgcttaaa agagaacccc caccaacctg      6300
     cgaatgttgt ggaacaacgg tggacgtgcg acatttaatt ctgcaatgca gaaaatatga      6360
     aagggagagg gagcagaaca atgtgagcac gacaagcttg agagacgccc tagcgaatga      6420
     agaagaagca acgaaaaatt tattaaagtt tctacatgaa acagggcttt acaaaaaatt      6480
     gtaatgaaac aagaattgtt ttatgaattg taaatttaaa accacttcag ttcgacacga      6540
     atgcaccctg gtgtaaagtg tcgttaatac acaaaaaaaa aaaaaaaaaa aaa             6593
//
ID   I_Ele4B_AAe repbase;    DNA;    INV; 5837 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5837
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1371-1371 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >96%
CC   identity. The consensus is ~87% identical to I_Ele4.
XX
FH   Key           Location/Qualifiers
FT   CDS           546..1838
FT                 /product="I_Ele4B_AAe_1p"
FT                 /translation="METDGDGTSGETGESSSTKRFRIKTYPSTFLGPFVVY
FT                 FRKKEKPINVLLISSEIYKLYKSVKEIKKVSLDKLRVIFGSRDDANSLLES
FT                 KLFFDSYRVYAPCDSCEINGVIYDENLNCEDIVNYGSGKFKNKAIQPVKIL
FT                 DCMRLSKLTFTDKQSSYMHSNCIKITFEGSVLPDYVDIDNVIFKVRLYYPK
FT                 IMHCDRCLLFGHTSHFCSNKIKCFKCGGSHSSTDCNKNSDFCIYCRKKHNS
FT                 LKDCSVYISQQQQSNQKIKNRNKLSYSEVIKTSPELSSTNMFAPLSNNVDN
FT                 AVSNDDHENFIYKPPNKRKRIIKPVINNDCFSNPQPSTSFDIHFPPLTSPT
FT                 SSRVIPGFQKNTTQVNTNENKDNSNSTFQKTESSDAENSILNILEELIDFL
FT                 GINDFWKKIIKKILPFLASIFEKLNSIGPLICSLFSS"
FT   CDS           1841..5533
FT                 /product="I_Ele4B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASSKINNLNILQWNCRSIIPKIDRFKALVINYDLDI
FT                 FCLNETWLVEAKSFRIPSFNIIRKDRNTSNGGVLIGIRENIEFKYLNFSID
FT                 SEIEYVAVSVKHKGLEFSIICIYIPPQAKFSLLELKSIFNNIPSPFYILGD
FT                 LNAHNLAWGSHKIDGRGSLIMDVIDELNLNILNDGSFTRIVVPPGHHSCID
FT                 LSLCSNSLSMISSWKTIEDANGSDHVPILINVHNPNNIQYNQEPYVPDLTI
FT                 NVDWAKFSDLVSFALLSFDNSLSTIENYKRFSKLLIDCLKKSQTKKMMHSS
FT                 SKKKNPAFWWDNDCTIALKNKSNAFKLFRRFGSRDQYILYCKAEAQFTRVI
FT                 KFKKRNYWRNFIENLDPDTSLSTLWTVARNMRNYNFSTSPVLEYSEDWIDQ
FT                 FASKICPDFTPIDIKLKKKSTYNFFPNLCTEFSIEEMNLALSVTKNTTPGI
FT                 DNIKFIVLKNLPIDGKLHLLSLYNTFLFQNIFPEEWRFIKVVSILKPGKNP
FT                 SLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQFGFRKGRGTR
FT                 DCVALLSSYIELSLNKKQDVVSTFLDVSGAYDSVLIDLLYNKMIDCKLPLI
FT                 IANFLCNLFSFKIMHFFHNGESKMIRYSYFGLPQGSCLSPFLYNLFTRDII
FT                 SIIPNGCIFIQFADDKVISISGKSREVIRHFMQCCLDNLGTWAHNNGFSFS
FT                 VQKTKFIIFSRKHSPIDIVLYLNYHQIEQVFEYKYLGIWFDFKLKWNKHIQ
FT                 YIQTICSKRINFLRTITGTWWGAHPSDLITLYKTTIRSVMEYGCFTFGSAI
FT                 QTHFSKLEKIQFRCLRICLKLMNSTHTKSIEVLAGIIPLKYRFHELNCKFL
FT                 LQCFSNNHPIINILKSLFEINPTSRLLSSFIYCSAENVMLDSSPGFYEYNM
FT                 NVHSFRPYVDFTLHEELKHIHFSARSYFAKLLFQRKFIGVEPEQIYFTDGS
FT                 LINNIAGFGVFNFHIAHFFKLEXPCSIYIAELTALHFACCLIRNCAPNIYM
FT                 VCSDSFSSLHALNTINFNFKTSKIILSIKEILNDLFSRGFVIKFVWVPAHS
FT                 NIYGNEQADSLAKLGVSRGIIYDRAIFPSEYFTKLKQNSINNWQIAWNTSD
FT                 KGRYCYSIFPKVKRFPWFHQLSVSRNFICFYTRLMSNHYICNSHLYRINIK
FT                 DSNLCECGESYEDIDHIVFNCTRFDLPRRNIFEKISRLGLNVPTSIRDILA
FT                 LKNLNILKILYGYFNEISYYS"
XX
SQ   Sequence 5837 BP; 1895 A; 816 C; 887 G; 2237 T; 2 other;
     tcatctttgg taagtaggcc ttgatcggat taccggtgtt tttctgcgct tgtcaatttt        60
     tttccgtttt tcaggtggat ttcgtttgaa aggatttgaa ggtggattat caaacgagtg       120
     gccatcgaag atttgaagaa gaagaggtac tagaaggtgt actggactaa tttcaactgt       180
     tcgagttcaa tttggtgatt gtgaagaaat tgatttggct ttgtcgactt caagacaaaa       240
     cgactgttga agagaattga agttcgaagg aggaaattcg accattctgg aatcaacgag       300
     gatttgatga agaagacgtg aactaaaaaa tcaagcttca actcatcaag attgatttga       360
     gtgctggtgg aaatacttgg ttgtctttga cggcctcaag cctttggtgt ggattgaagt       420
     ctctttaagt ataattttat ttattttatt agtattattc ttattcttat tattacttgt       480
     ttatattatc aattgcactt cagtattttt tcatatattt tcactcaccc cgtcaatttt       540
     ccaatatgga gactgacggg gatggaacat ctggtgaaac tggtgaatca tcttccacca       600
     agcgttttcg cattaaaact tatccctcca cttttttagg cccttttgtt gtttattttc       660
     gtaaaaagga aaagcctata aatgttcttt tgatatcttc ggaaatttat aaattataca       720
     aatctgtcaa ggaaattaaa aaagtttcac ttgacaaatt gagggttata tttggatccc       780
     gtgatgatgc aaattcatta ttggaatcta aacttttttt tgattcatat cgagtttacg       840
     ctccttgtga ctcgtgtgaa ataaacggag tcatttacga tgaaaatttg aactgtgaag       900
     atattgtaaa ttacggttca ggtaaattta aaaataaggc aattcagcca gttaaaattt       960
     tagattgcat gcgtttatcg aaattaacat ttaccgataa acaatcttca tacatgcatt      1020
     ctaattgcat aaaaattaca tttgagggtt ctgttcttcc cgattatgta gacattgaca      1080
     atgttatttt taaagttaga ctttattatc cgaagattat gcattgcgat cgttgtctcc      1140
     tttttggtca cacatcgcat ttttgttcta acaaaattaa atgttttaaa tgtggtggta      1200
     gtcattcatc tactgattgc aataagaatt cagatttttg tatttattgt cgtaaaaaac      1260
     acaattcttt aaaagattgt tctgtttaca tttcgcaaca acaacaatct aaccagaaaa      1320
     ttaaaaatcg aaacaaatta tcatattctg aggtaattaa aacttctccg gaattatcct      1380
     caacgaatat gtttgctcct ctttcaaata atgttgataa tgctgtatca aatgatgatc      1440
     atgaaaattt catttataaa cctcctaata aaaggaaacg aattattaaa ccagttataa      1500
     ataatgattg tttttcaaat cctcaaccat caacatcatt tgatattcat tttccccctc      1560
     ttacttctcc tacttcttct cgtgttattc ctggttttca aaaaaataca acacaagtaa      1620
     acacaaacga aaataaggac aattcaaatt caacttttca aaaaactgaa agttcagatg      1680
     cagagaattc tattttgaat attttggaag aattgattga ttttttggga ataaacgatt      1740
     tttggaaaaa aataattaag aaaattttac catttttggc ctctattttt gaaaagttga      1800
     attcaattgg acccctcatt tgttctttgt tttcttcgta atggcttcat caaaaattaa      1860
     taatttaaat attttacagt ggaactgtcg aagtattatt ccaaaaattg acagattcaa      1920
     agcattagtc ataaattatg atttggatat attttgttta aatgagacct ggttagtaga      1980
     agctaaatca tttcgaattc catctttcaa tattatacgt aaagatcgca acacttcaaa      2040
     tggtggtgtg ttaattggaa ttcgtgaaaa tattgaattc aaatatttaa atttttcaat      2100
     tgattcagaa attgaatatg ttgcagtttc tgttaaacat aaaggtttag aattttcaat      2160
     tatttgcatt tatattcctc cccaagcaaa attctctttg ttagagttga aatctatttt      2220
     taataatatt ccttcacctt tttatatact aggagattta aatgctcata atttggcatg      2280
     gggaagccat aaaattgatg gtaggggttc attaattatg gacgttattg atgaattaaa      2340
     tttaaatatt cttaatgatg gttcttttac aaggattgtt gtgcctcctg gtcatcattc      2400
     ttgtattgat ttatctcttt gttcgaatag tttatccatg atttcatctt ggaaaactat      2460
     tgaagacgca aacggaagtg atcatgtgcc tatattgatt aacgttcata atcctaataa      2520
     tatacaatat aatcaagaac cttatgttcc tgatttaaca ataaacgtgg attgggctaa      2580
     attttctgat ttagtttcct ttgctttgct cagttttgac aattcacttt ctaccattga      2640
     aaattataaa cgtttttcaa aattattaat tgattgttta aaaaaatctc aaactaaaaa      2700
     aatgatgcat tcatcatcta agaaaaaaaa tccagcattt tggtgggata atgattgtac      2760
     aattgctttg aaaaataaat caaatgcttt caaattattt agacgatttg gttctagaga      2820
     tcaatatatt ttatattgta aagctgaagc tcaatttact agagttataa aatttaaaaa      2880
     aaggaattat tggagaaatt ttattgaaaa tcttgatcct gatacatcac tatcaacatt      2940
     atggactgtt gctcgaaata tgagaaatta taatttttct acttcaccag ttttggaata      3000
     ttcggaagat tggattgacc agtttgcttc taaaatttgt cctgatttta cacctataga      3060
     tataaaactt aaaaaaaaat caacatataa tttttttcct aatctttgta ctgaattttc      3120
     tattgaagaa atgaatttgg cattatcagt tacgaaaaat actactcctg gtattgataa      3180
     tattaaattt atagttttaa aaaatttacc tattgatggg aagttacatt tactttcatt      3240
     atataataca tttttgtttc aaaatatttt tcctgaggaa tggcgtttca taaaagttgt      3300
     aagtatctta aaacctggga aaaatccttc acttgttgaa agtagaagac caattagttt      3360
     attatcatgc cttcgtaaat taatggaaag gatgatttta aaccgtcttg aattatgggc      3420
     agaaaaaaat aatatatttt cttcatctca atttgggttc agaaaaggtc gaggcacacg      3480
     tgattgtgta gctcttttat catcatatat tgaattatca ttgaacaaga aacaagatgt      3540
     agtttctaca tttcttgatg tttctggtgc atacgattct gtactgatag atttacttta      3600
     taataaaatg attgattgta aacttccttt aataattgca aattttttgt gtaatttatt      3660
     ttcatttaaa ataatgcatt ttttccacaa cggagaatcg aaaatgatcc gttatagtta      3720
     ttttggtctt cctcagggtt cttgtttaag cccattttta tataatttat ttactagaga      3780
     tattatttct attattccta atgggtgtat cttcattcaa tttgctgatg ataaggttat      3840
     ttctatcagt ggtaagagta gagaagttat tcgtcatttt atgcaatgtt gtttggacaa      3900
     ccttggtaca tgggcgcata ataatggttt tagtttttca gtacaaaaaa caaaatttat      3960
     tatattttct cgtaaacatt ctccaattga tattgtttta tatttaaatt atcatcagat      4020
     agagcaggtt tttgaatata aatatcttgg aatatggttt gattttaaac taaaatggaa      4080
     caaacatatt caatacattc aaacaatttg ttctaagaga ataaattttc ttcgaacaat      4140
     cactggaact tggtggggag ctcatcccag tgatttgatt accctttata aaacaactat      4200
     tcgttctgta atggaatatg gctgttttac ttttggtagt gccattcaaa ctcatttttc      4260
     taaactagaa aaaatccaat ttcgttgttt aagaatttgt ttgaaattaa tgaattctac      4320
     tcatactaaa tctattgaag ttttagctgg tatcattcct cttaaatacc gttttcatga      4380
     actaaattgt aaatttttac tacaatgttt ctccaataat catccaataa ttaatatatt      4440
     aaaatctttg tttgaaatta atcccaccag tagattattg agttcattca tttattgctc      4500
     cgctgaaaat gtcatgttag attcatctcc tggtttctat gaatataaca tgaatgttca      4560
     ttcttttcgt ccttatgttg attttacctt gcatgaagaa ttgaaacata ttcattttag      4620
     tgctcgctca tattttgcaa aattattatt tcaacgtaaa tttattgggg tggaacctga      4680
     acaaatttat ttcacagatg gatctttgat caataatata gcaggttttg gagttttcaa      4740
     ttttcatatt gcacattttt ttaaattaga akctccttgt tcwatttaca ttgctgaatt      4800
     aacagctctc cattttgctt gttgtttaat cagaaattgt gctccaaata tatatatggt      4860
     gtgttctgat agttttagta gtcttcatgc tctgaacaca ataaatttca atttcaaaac      4920
     aagtaaaatt attttatcta ttaaagaaat attgaatgat ttgttttcta gaggatttgt      4980
     cattaaattt gtttgggttc ctgctcattc taatatttat ggtaatgaac aagctgactc      5040
     tttagcaaaa ttaggtgttt ctcgtggaat aatttatgat cgggctattt ttccatcaga      5100
     atactttact aaattgaaac aaaattctat aaataattgg caaatcgctt ggaatacaag      5160
     tgataaagga cgttattgtt attccatttt tcctaaggtg aagcgtttcc cttggtttca      5220
     tcaattatcg gtcagccgta attttatttg tttttatacc agacttatgt ctaatcacta      5280
     tatatgtaac agtcatttat accgcataaa tatcaaggac tctaatcttt gtgaatgtgg      5340
     tgaatcatat gaagatatag atcatattgt ctttaattgt actcgttttg atttgccaag      5400
     aagaaatatt tttgaaaaaa tttcaagatt gggtcttaat gtacctacat ctattcgaga      5460
     tattttggcg cttaaaaatt taaatatttt aaaaatttta tatgggtatt ttaatgagat      5520
     ttcttattat agttgatact gctcgctttt ttatatttat tttcagataa ccgatccttt      5580
     gtaccactcg gagtttaagt tgttttaact caagttactt ggatatacga ggaccctcat      5640
     gatgactcca acggctccga tatggatcaa ttccggatga gcctttagta tttaagaatt      5700
     atttttgtaa tgttgttcga aaagataaag aggttttgtg cctttttgag aaagatttcc      5760
     aaaaagaaat cactcaaagg ggtttttccc tctttcaaaa ttcaagttaa aataaaagat      5820
     aataataata ataataa                                                     5837
//
ID   I_Ele4C_AAe repbase;    DNA;    INV; 5674 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5674
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1372-1372 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1665
FT                 /product="I_Ele4C_AAe_1p"
FT                 /translation="METDGDAVSIVYGDSKESSSTIKPIRIKTYPSTFMGP
FT                 YVVFFRKKEKPINVLLISSEIYKIYKTVKEIKKISLDKLRVIFGSREDANA
FT                 LLESKLFLNSYRVYAPCNSCEINGVIYDESLECDEILNHGSGIFKNKAILP
FT                 VKILECVRLSKLLFSDKGSSYTHSNCIKITFEGSVLPDFVVVDNVKFHVRL
FT                 FYPKIMHCDRCLLFGHTSHFCSNKQKCSKCGGIHSPSDCNKISDICIHCGK
FT                 KHNFLKECAVFIAHQKQFNLKIRNKNKLSYSEVIKTSNAFSSNNIFEPLTQ
FT                 KVDIEDSNEEHNFVYNPPTKRKRINKTNNQNNIFDPQPSTSYEKNFPSINL
FT                 SKSQNIPGFQKINQDYFGNKNDDIKKTTNNSHVQNDDGGSILKILEDIIEF
FT                 LGLNDFWKKMIKKCLPFVASILEKLNSFGPLISSLFCS"
FT   CDS           1668..5360
FT                 /product="I_Ele4C_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAQIKNSSLNILQWNCRSVIPKIERLKALIVNNDIDI
FT                 FCLNETWLVENXFFRIPSFNIIRKDRNMAYGGVMIGIRQNIEFKFLNFSLD
FT                 SPIEYVAITVKHNGIEFSILCLYIPPQASFSLLDLKTILNNIPSPFYILGD
FT                 LNAHNLAWGSEFSDGRGSLIMDLIDELNLNILNDGSFTRIAVPPAHHSCID
FT                 LSLCSSSLAIKSTWKIIDDPNGSDHLPIQISIHFPLRDQHHQEPFVPDLTK
FT                 NIDWSKFSDLVSTALINFDYSLSPLQNYNRFSVILIDCLQKSQTKKIFLGP
FT                 TKRRHNSFWWDHDCTVALKNKSEAFKNFRNSGTRNNYIFYRKTEAQFTRIV
FT                 KFKKRNYWKTFIENLDSETSLNKLWSVARNLRNYNIPSTSVLEYSENWIDQ
FT                 FSSKICPDFVPTPIIFKTHQLYNYYPDLCNEFSIEEMELALSVTKNTAPGI
FT                 DNIKFIVLKKLPIDGKLHLLSLYNSFLFQNVFPSEWRFIKVISLLKPDKNP
FT                 SLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQYGFRKGRGTR
FT                 DCIALLASHIELSFNKKQDVVSTFLDVSGAYDSVLIDLLFNKMNDCKIPII
FT                 ISNFICNLFSFKIMHFFHNGSSRMVRYSYFGLPQGSCLSPFLYNLFTRDII
FT                 SIIPNGCYFIQFADDNVISVNGHSREVIRHFMQNCLDNLHSWAHNNGFTFS
FT                 VQKTKFILFSRKHSPVNIDLYLSNQQIEQVIDYKYLGLWFDSKLKWNSQIK
FT                 YIQKICSKRINFLRMITGTWWGAHPNDMITLYKTTIRSVMEYGCFTFGSAA
FT                 QIHFSELEKIQFRCLRICLNLMNSTHTKSIEVLAGIIPLKYRFHELNCKFL
FT                 IHCFSMDHPLIGTLKSLFEINPSNRILKSYIYCSRENIVSNVSPHFYEYSI
FT                 AAHSFQPCVDLSLHEELKQIPNHARSRYANLLFKRKFIGVDNDQIFFTDGS
FT                 LIENVAGFGVFNFHLAHFYKLESPCSIFTAELTAIYFTCKLIENYSPNIFM
FT                 VCSDSLSCLQALNCISFNFKTHHIVLSIKGLLNDLYSKGFIIKLVWVPAHC
FT                 NIYGNEQADLLAKLGVFRGIIYNCDIYYSEYFTNLKKYSMNDWQISWNTSD
FT                 KGRYCYSICPKVKIFPWFRSLPVGRNFICSYSRLMSNHYICSNHLYRMNIT
FT                 DSNICECNKSYEDIDHIVFECSRFNAPREKFLDRIISLSHDIPVSVRDILG
FT                 NHSLPVMRILYKYLNEISYRV"
XX
SQ   Sequence 5674 BP; 1821 A; 811 C; 887 G; 2152 T; 3 other;
     tcatcttcgg taagtaggcc ttgaccgggc wacaggtttt tttttctgct cttgtcattt        60
     ttttttcttt ttcaggtgaa ttttcattcc gaagtattgc agcttgaagg cgattgttac       120
     tacgtttttg atgtttgaag agaaggagaa acaagtggat tgcgaagtcg ttctgaaggt       180
     tcaaattgca agactcctca caaacgttgg tgttcccggc ctttgacgtt tttcttggtt       240
     gctgttgctg gtgacgctgg acttgtatgg tgtttgttaa gtattaattt tctattttaa       300
     ccgttcatta ttgatattac tgtttcttgg tgttgatttg ggttttgttc accccgtcat       360
     ttttccatta tggaaactga cggggatgca gtttctatag tatatgggga ttcgaaagaa       420
     tcttcatcta caatcaaacc tattcgtatc aaaacttatc cttctacatt tatgggacct       480
     tatgtagtgt ttttccggaa aaaggaaaaa cctatcaatg tccttttaat atcatcagaa       540
     atttacaaaa tttacaaaac tgttaaggaa atcaaaaaga tttccttaga caaattgcgt       600
     gtsatttttg gatctcgaga agacgctaat gcgctattag agtccaagtt atttttgaat       660
     tcttatcgag tttacgctcc atgtaactcg tgtgaaatca atggtgtcat ctatgatgaa       720
     tcattggaat gtgatgagat tttgaatcat ggttcaggaa tatttaaaaa taaagcaatt       780
     ttgccagtta aaattttgga atgtgttcga ttatcgaaat tattattttc agataaaggt       840
     tcctcatata cacattcgaa ttgcatcaaa atcacatttg aaggatctgt tcttcctgat       900
     tttgttgttg ttgacaatgt aaaatttcat gttaggctat tttaccctaa aattatgcat       960
     tgcgatcgtt gtcttctttt tggacacacg tcgcattttt gttccaataa acagaaatgt      1020
     tcaaaatgtg gtggaattca ttctccatca gattgtaaca aaatttctga catttgtatt      1080
     cattgtggca aaaaacataa ttttttgaaa gaatgtgctg tttttatagc tcatcaaaag      1140
     caattcaatt tgaaaataag gaataagaac aaattatctt attctgaagt tattaaaaca      1200
     tccaatgcat tttcgtcaaa taatattttt gaaccattaa ctcaaaaggt tgatattgag      1260
     gattcaaatg aggaacacaa ttttgtgtat aatcctccta ccaaaagaaa aagaattaat      1320
     aaaacaaaca atcaaaacaa tatttttgat cctcaaccat caacatctta tgaaaaaaat      1380
     tttccttcaa ttaatttatc aaaatctcaa aacattcctg gttttcagaa aattaatcaa      1440
     gattattttg ggaacaaaaa tgatgatatt aaaaagacta ccaataattc tcatgttcaa      1500
     aacgatgatg ggggtagtat tttgaaaatt ttagaagata ttatagaatt tttgggttta      1560
     aatgattttt ggaaaaaaat gataaagaaa tgtttaccat ttgtagctag tatactagag      1620
     aaattgaatt cttttggacc cctcattagt tccttgtttt gttcctaatg gctcaaatca      1680
     aaaatagtag tttgaatatt ttacaatgga attgcagaag tgttattcca aaaattgaaa      1740
     gactgaaagc tttaatagtc aataatgata ttgatatatt ttgtttgaat gaaacatggt      1800
     tagtggaaaa tawttttttt agaattcctt cttttaatat aattcgaaag gatcgtaata      1860
     tggcatatgg aggtgtaatg atcggaattc gtcagaatat tgaatttaaa tttttaaatt      1920
     tttcattgga ctcaccaatt gaatatgttg ctattactgt caaacataat ggaatagaat      1980
     tttcgatttt atgtttatat attcctccac aagcaagttt ttcattatta gatttgaaaa      2040
     caattctaaa taatatacct tctccatttt acatacttgg tgatctgaat gctcataact      2100
     tggcttgggg tagtgagttt tctgatggca gaggttcatt aatcatggat ctgattgatg      2160
     agttgaattt aaatattctg aatgatggct cattcactag aatagcagtt ccccctgctc      2220
     atcattcatg cattgattta tcattgtgtt caagtagttt ggccataaaa tcaacttgga      2280
     aaattataga tgatccaaat ggtagtgatc atttacctat tcaaatttct attcattttc      2340
     ctcttcgtga tcaacatcac caagaaccat ttgttcctga tttaacaaaa aatattgatt      2400
     ggtccaaatt ttcagattta gtttctactg ctttaatcaa tttcgattat tcactttctc      2460
     ctcttcaaaa ttataacagg ttttcagtca ttctaataga ttgtttacaa aaatctcaga      2520
     ctaaaaaaat atttttgggg ccaaccaaaa gaagacataa ttctttttgg tgggatcatg      2580
     attgtactgt tgcacttaaa aataaatctg aagcctttaa aaattttcgt aattcaggta      2640
     ctaggaacaa ttatattttt tatcgtaaaa ctgaagccca gtttacacga attgttaagt      2700
     ttaaaaaaag gaattattgg aaaactttta ttgaaaatct tgattcagaa acgtcattaa      2760
     ataaattatg gtctgttgct agaaatttaa ggaactataa tattccttct acctctgttt      2820
     tggaatattc tgaaaattgg atagatcaat tttcttcgaa aatttgtcct gattttgttc      2880
     ctacccccat catatttaaa actcatcaat tgtacaatta ttaccctgat ctttgtaatg      2940
     aattttcaat tgaggaaatg gaattagcat tatctgttac taaaaatact gctccaggta      3000
     ttgacaatat aaaatttatt gtgttaaaaa aattacctat tgatggtaaa ttacatttac      3060
     tatccctata taattcattt ttgtttcaga acgtttttcc ttctgaatgg cgattcataa      3120
     aagtaattag tttacttaaa cctgataaga atccttcatt agtagaaagt agaagaccta      3180
     ttagtttatt atcatgtctt cgtaaactaa tggaaagaat gatacttaat cgtctggagt      3240
     tatgggctga gaaaaataat atattttcat catctcaata tgggtttaga aaaggtcgcg      3300
     gaactagaga ttgtattgct cttctagctt cacatattga attatcgttc aataaaaaac      3360
     aagatgtagt ttctactttt cttgacgttt ctggtgcata tgattcagtt cttattgatt      3420
     tacttttcaa caaaatgaat gattgtaaaa ttccaatcat tatctccaat ttcatatgta      3480
     atttgttttc cttcaaaata atgcattttt ttcataatgg gtcttctaga atggtccgtt      3540
     atagttattt tggcttacca cagggttctt gtttaagtcc ctttttatac aatttattca      3600
     ccagagacat catttccatt attccaaatg gatgttattt tatacaattt gcggatgata      3660
     atgtcatttc tgttaatggt catagcagag aagttattcg tcattttatg caaaattgtt      3720
     tagataatct tcactcatgg gcacataata atggttttac tttttcagtt caaaaaacaa      3780
     aattcatatt attttctcgt aaacattctc cagtaaatat tgatttgtac cttagtaatc      3840
     aacaaattga acaagttatt gattataaat atcttggtct atggttcgat tcgaaattaa      3900
     agtggaatag tcagattaaa tatattcaaa aaatttgctc gaagagaata aattttcttc      3960
     ggatgataac tggaacatgg tggggtgcac atcctaatga catgatcaca ctctataaaa      4020
     caactattcg ttcagtaatg gaatatggtt gttttacttt tgggagtgct gcacaaatac      4080
     atttttccga actggaaaaa atacaatttc gttgcttgag aatttgttta aatttgatga      4140
     attctacgca tactaaatct attgaagtcc ttgctggtat tattccactc aaatatcgct      4200
     ttcatgaatt gaattgtaaa tttttgatac attgtttttc aatggatcat cctttaattg      4260
     gtacactaaa atctttgttt gaaatcaatc cttctaatag aatattgaaa tcatatatct      4320
     attgttctag agaaaatatt gtatcaaatg tttctccaca tttttatgaa tatagcatag      4380
     ctgctcattc ttttcaacca tgtgtggatt tatctttaca tgaagaatta aaacaaattc      4440
     ctaatcatgc tcgttcccgt tatgccaatt tattatttaa acgtaaattt attggggtag      4500
     acaatgatca gatttttttt accgatggat ctttaattga aaatgtagca gggtttggag      4560
     tgtttaattt tcatttggcc catttctata aattagaatc tccttgttca attttcacag      4620
     ctgaattaac agctatatat tttacatgca aattgattga gaattattct ccaaatatat      4680
     ttatggtgtg ctcagatagc cttagttgtc ttcaagctct gaattgcatt agttttaatt      4740
     tcaaaaccca tcatattgtt ctatcaatta aagggttatt aaatgattta tattctaaag      4800
     gatttataat taaattggtt tgggttccag ctcattgcaa tatttatggt aatgaacaag      4860
     ctgatttgtt ggcaaaattg ggggtttttc gtggaataat ttataattgt gatatttatt      4920
     attcggaata ttttactaat ttgaaaaaat attctatgaa tgattggcaa atttcttgga      4980
     atacaagtga caaaggtcga tattgttatt ccatatgtcc gaaggtaaaa atatttcctt      5040
     ggtttcgcag tcttcctgtt ggacgtaatt ttatttgctc ctattctaga ctaatgtcaa      5100
     atcattacat ttgtagtaat catttatatc gcatgaatat cacagattca aatatttgtg      5160
     aatgtaataa atcatatgaa gacatagacc atatcgtttt tgaatgctct cgttttaatg      5220
     cacctagaga aaaattcctt gatagaataa tcagtttaag tcatgatatt cctgtgtctg      5280
     ttcgggatat tctgggaaat cattctcttc ctgtcatgag aattttatac aaatatttga      5340
     atgaaatttc ttatcgtgta tgatactgct cgtttgtttt ttttctttga ttttattttc      5400
     agagacatca agtttggtac tcatccatct aatcgattgg cttctgaatg cgtgctagag      5460
     aatattcgtg atgactgaac ttggaaaact ttggctccgc tatggatcga ttccgggaga      5520
     gcctttattt aataaatatt attttataac gttattcgaa aagataaaga ggttttgtgc      5580
     ctttttgaga aagatttcat tagaatatca ctcaaagggg ctttttcctc tttcaaaatt      5640
     cataagttaa aaataaataa ataaataaaa taaa                                  5674
//
ID   I_Ele4D_AAe repbase;    DNA;    INV; 5673 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4D_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5673
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1373-1373 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >99%
CC   identity.
CC   The consensus is ~89% identical to I_Ele4C_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           354..1655
FT                 /product="I_Ele4D_AAe_1p"
FT                 /translation="METDGDVVSVVDGDSKGSSSTIKPIRIKTYPLTFMGP
FT                 FVVFFRKKEKPINVLLISSEIYKIYKSVKEIKKISLDKLRVIFGSREDANA
FT                 LLESKLFLNSYRVYAPCDSCEINGVIYDESLECDEILNHGSGIFKNKAILP
FT                 VKILECVRLSKLLFSDKGSSYTHSNCIKITFEGSVLPDFVVVDNVKFHVRL
FT                 FYPKIMHCDRCLLFGHTSHFCSNKQKCSKCGGIHSPSDCKKLSDICIHCGK
FT                 KHNFLKECAVFIAHQKQFNLKIRNKNKLSYSEVIKTSNGFSSNNIFEPLTE
FT                 NIGIQDSNEEHNFVYKPPIKRKRINKSINQNNNLNPQPSTSYEKNFPPINL
FT                 SKSQNIPGFQKINHDFFGNKSDDIKKNNNNSQNHVHNDTGGTILNILEDII
FT                 EFLGLNDFWKKLIKKCLPFVASLLEKLNSFGPLISTLFCS"
FT   CDS           1658..5350
FT                 /product="I_Ele4D_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAQINNNNLNILQWNCRSIIPKIDRLKALIINNDIDL
FT                 FCLNETWLVNTNVFRIPSFNIIRKDRNIAYGGVMIGIRQNIEFKFLNFSLD
FT                 LPIEYVAISVKHNGLEFSILCLYIPPQARFSLQDLKTILNNIPAPFYILGD
FT                 LNAHHLAWGSDISDGRGSLIMDLIDELNLNILNDGSFTRIAVPPVRHSCID
FT                 LSLCSNSLSMKSTWKSINDPNGSDHLPIKIIVHFALNEPFHQEPFVPDLTK
FT                 YVDWTKFSDLVFTALINFDYSLSPLQNYDKFSAILIQCLQRSQTRKLCLEP
FT                 TRRRLNSFWWDHDCTVALKNKSEAFKKFRNSGTRDNYFLYRKSEAQFTRVI
FT                 KYKKRNYWKTFIENLDSETSLTKLWSVARNLRNYNIPSTSVSEYSENWIDQ
FT                 FASKICPDFAPTSITFKTHQLYNYYPDLCSEFSIEEMNLALSITKNTAPGI
FT                 DNIKFIVLKNLPIDGKLHLLSLYNSFLFQNIFPLEWRSIKVVSLLKPDKNP
FT                 SLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQYGFRKGRGTR
FT                 DCVALLASHIELSFNKKQDVVSTFLDVSGAYDSVLIDLLYKKMNDCKIPII
FT                 ISNFLCNLFSFKIMHFFHNGSSRMVRYSYFGLPQGSCLSPFLYNLFTRDII
FT                 SIIPNGCYFIQFADDKVISIHGRSREVIRHYMQICLDNIYTWAHNNGFSFS
FT                 VQKTKFILFSRKHSPINIDLYLNNQQIEQVIDYKYLGIWFDSKLKWNNHII
FT                 YIQKICSKRINFLRLITGTWWGSHPNDMITLYKTTIRSVMEYGCFAFGSAA
FT                 QIHFSKLEKIQYRCLRICLNLMNSTHTKSIEILAGIIPLKYRFQELNCKFL
FT                 INCFSNEHPIIDTLKSLFEINPTNRILNSFIHCSTENIIPNLSVHFHEYSM
FT                 NVHSFQPIVDLSLLEELKQIPCHAYPRYAPLLFKRKFIGVNNDQIFFTDGS
FT                 LIENMAGFGVYNFQLAHFYKLESPCSIFTAELTALYFTCNLIKNYTPNIFV
FT                 VCSDSLSCIQALNSISFNIKTHHIVLSIKGLLYDLYSRGFVIKFVWIPAHC
FT                 NIYGNEQADLLAKLGVFRGPIYKRDINYSEYFTNLKKHSINDWQISWNTSD
FT                 QGRYCYSIYPKVKVFPWFRHLPVGRNFICSFSRLMSNHYICSSHLYRMNIT
FT                 DSNICECNKSYEDIDHIVFECCRFEAPREKLLENIISLGLDIPVSVRDILG
FT                 NRSFLIMKILYEFLNEISYRV"
XX
SQ   Sequence 5673 BP; 1817 A; 824 C; 876 G; 2156 T; 0 other;
     atcttcggta agtaggcctt gaccgggtta caggtttttt tttctgcgct tgtcattttt        60
     tttctttttc aggtgcattt ttttccgaag ttttgcagtt tgaaggcgat tgctactacg       120
     tttttgtgat ttgaagaaaa ggagaaagaa gtgggttgcg aagtcgaaga ttcaaattgc       180
     aagactcttc acaagtgttc ccagcctttg acgtttttgt gattgctgtt gctggtgttg       240
     ctgagtttgt atggtgtttg ttaagtatta attttatttt ttaattgttt attattgatt       300
     ttactatttc ctggtgttga tttggttttc gttcaccccg tcatttttcc attatggaaa       360
     ctgacgggga tgtagtttct gtagtagatg gggattcgaa agggtcttca tctacaatca       420
     aacccattcg aataaaaaca tatcctttga catttatggg accttttgta gtgttttttc       480
     ggaaaaaaga aaaacctatc aatgtccttt taatttcatc agaaatttac aaaatctaca       540
     aatctgttaa ggaaatcaaa aagatttcct tagacaaatt gcgtgtcatt tttggatctc       600
     gagaagacgc taatgcgcta ttagagtcca aattattttt gaattcctat cgagtttacg       660
     ctccatgcga ctcgtgtgaa atcaatggtg tcatctatga tgaatcattg gaatgtgatg       720
     agattttaaa ccatggttca ggaatattta aaaataaagc aattttgcca gttaaaattt       780
     tggaatgtgt tcgtttgtcg aaattattat tttctgataa aggttcctca tacacacatt       840
     caaattgcat caaaatcaca tttgaaggct ctgttcttcc tgattttgtt gtagttgata       900
     atgtgaaatt tcacgttcgg ttgttctatc ctaaaattat gcattgcgat cgttgtcttc       960
     tttttggaca cacgtcgcat ttttgttcca acaaacagaa atgttcaaaa tgtggtggaa      1020
     ttcattctcc atcagattgt aaaaaacttt ctgatatttg tattcattgt ggcaaaaaac      1080
     ataatttttt gaaggaatgt gcagttttca tagctcatca aaagcaattt aatttgaaaa      1140
     ttaggaataa aaataaatta tcttattccg aagttattaa aacatctaat ggattttcgt      1200
     ccaataatat ttttgaacca ttaactgaaa atattggtat tcaggattca aatgaggaac      1260
     acaattttgt gtataaacct cctatcaaaa ggaaaagaat taataaatca attaatcaaa      1320
     ataataattt gaatcctcaa ccatcaacat cttatgaaaa aaactttcct ccgattaatt      1380
     tatcaaaatc tcaaaacatt cctggttttc agaaaattaa tcatgatttt tttggaaaca      1440
     aaagtgatga tattaaaaag aataataata attctcaaaa tcatgttcat aatgatactg      1500
     ggggtactat tttgaatatt ttagaagata taatagaatt tttgggatta aacgattttt      1560
     ggaaaaaatt gattaaaaaa tgtttgccat ttgtagcaag tctacttgaa aaattgaatt      1620
     cttttggacc cctcattagt accttgtttt gttcctaatg gctcaaatca ataataataa      1680
     cttgaatatt ttacaatgga attgtagaag tatcattcca aaaattgata gattaaaagc      1740
     tttaataatc aataatgata ttgatttatt ttgtttgaat gaaacatggt tagtgaacac      1800
     taatgttttt agaattccat cttttaatat tatccgaaaa gatcgtaaca tagcatatgg      1860
     gggtgtaatg attggaattc gtcagaacat cgaatttaaa tttttaaatt tttcattgga      1920
     tttacctatt gaatatgttg ctatatctgt aaaacataat ggtctggaat tttcgatttt      1980
     gtgtctgtat attccacccc aagcaagatt ttcattacaa gatttaaaaa caatattaaa      2040
     taatattcct gctccatttt acatacttgg tgatcttaat gctcatcatt tagcttgggg      2100
     tagtgacata tctgatggca gaggttcatt aattatggac cttattgatg aattgaattt      2160
     aaatattctg aatgatggtt cattcactag gattgcagtt cctcctgttc gtcattcttg      2220
     cattgactta tcactttgtt caaatagttt atccatgaaa tcaacttgga aatctattaa      2280
     cgatccaaat ggtagtgatc atttacctat aaaaattatc gttcattttg ctctaaatga      2340
     gccgtttcat caagaacctt ttgttcctga tttaacaaaa tatgtagatt ggacaaaatt      2400
     ttcagattta gtttttacag ctctaatcaa tttcgattat tcactttctc ctcttcaaaa      2460
     ctatgacaag ttttcagcca ttttgattca atgtttacaa agatctcaga ctagaaaact      2520
     atgtttggaa ccaacaagaa gaagacttaa ttctttttgg tgggatcatg attgtactgt      2580
     tgcacttaaa aataaatctg aggcttttaa aaaatttcga aattcaggta ctagggacaa      2640
     ttatttcctt tatcgtaaat ctgaagctca gtttactcga gttatcaaat ataaaaaacg      2700
     aaactattgg aaaactttta ttgaaaatct tgattctgaa acatcattaa ctaaattatg      2760
     gtctgttgct cgtaatttaa ggaattataa tattccttct acatctgttt cggagtattc      2820
     ggaaaattgg attgatcaat ttgcttcaaa aatttgccct gattttgctc ctacctcgat      2880
     cacattcaaa actcatcaat tatataatta ttatcctgat ctttgtagcg aattttcaat      2940
     tgaggaaatg aatttggcat tatctattac caaaaatact gctccaggta ttgataatat      3000
     aaaatttatt gtgctaaaaa atttacctat tgatggtaaa ttgcatttac tatccctata      3060
     taattcattt ttgtttcaga acatttttcc cttagagtgg cgttccataa aagtagttag      3120
     tttacttaaa cctgataaaa atccttcact agtagaaagt agaagaccta ttagtttatt      3180
     atcgtgtctt cgcaaactta tggaaagaat gattcttaat cgtcttgaat tatgggctga      3240
     gaaaaataac atattttcat catctcaata tggatttcga aaaggtcgtg gaactagaga      3300
     ttgtgtagct cttctagctt cacatattga actgtctttc aataaaaaac aagatgttgt      3360
     tagtactttt cttgatgttt ctggtgcgta tgactccgtc ctaattgatt tgctttataa      3420
     aaaaatgaat gattgtaaaa ttccaatcat tatttcaaat ttcttgtgca atttgttttc      3480
     cttcaaaata atgcattttt ttcataatgg atcttccaga atggtccgtt atagttactt      3540
     tggtttgcca cagggttctt gtttaagtcc atttttatac aatttattca ccagagacat      3600
     catttccatt attccaaatg gatgttattt catacagttt gcggatgaca aggtaatttc      3660
     tattcatggt cgtagtagag aagtaattcg tcattatatg caaatttgtt tggataatat      3720
     ttatacatgg gctcataata atggtttcag cttttcagtt caaaaaacaa aattcatatt      3780
     attttcacgg aaacattctc caataaatat tgatttgtat cttaataatc aacaaattga      3840
     acaagttatt gattataaat atcttggtat atggtttgat tcgaaattaa agtggaataa      3900
     tcatataata tatatccaaa aaatttgctc aaaaaggata aattttcttc gtttgataac      3960
     tgggacatgg tggggttcac atcctaatga catgatcact ctttacaaaa caactattcg      4020
     ttcagtaatg gaatatggtt gttttgcttt tggtagcgct gctcaaattc atttttctaa      4080
     actagaaaaa atacaatatc gttgtttgag aatttgtcta aatttgatga attccactca      4140
     tactaaatct attgaaattc ttgctggtat tattcccctc aagtatcgct ttcaggaatt      4200
     aaattgcaaa tttttgataa attgtttttc aaatgaacat cctataattg atacattaaa      4260
     atctttgttt gaaattaatc ctactaacag aatattgaat tcatttattc attgttctac      4320
     agaaaatatt attccaaatt tatctgtaca ttttcatgaa tatagcatga atgttcattc      4380
     ttttcaacca attgttgatt tatctttact tgaagaatta aaacaaattc cttgtcatgc      4440
     ttatccccgt tatgccccat tgttattcaa acgtaaattt attggggtaa ataatgatca      4500
     gatttttttc accgatggat ctttaattga aaatatggct gggtttggtg tatataactt      4560
     tcaattggct catttttata aattagaatc tccttgttcc atttttacag ctgaattaac      4620
     agctttatat tttacatgca atttgatcaa aaattataca cctaatatat ttgtggtgtg      4680
     ttcagatagc ctaagctgta ttcaagcttt gaattccatt agcttcaata tcaaaaccca      4740
     tcatattgtt ttatcaataa aagggttatt gtatgattta tattccagag gattcgttat      4800
     taaatttgtt tggattccag ctcattgcaa tatttatggt aatgaacagg ctgatttatt      4860
     ggcaaaactg ggtgtttttc gcggaccaat atataaacgc gatattaact attcggaata      4920
     ttttactaat ttgaaaaaac attcaataaa tgattggcaa atttcttgga atacaagtga      4980
     ccaaggtcga tattgttatt ccatttatcc gaaagttaaa gtatttccct ggttccgaca      5040
     tcttcctgtt ggacgtaatt ttatttgttc cttttccaga ttaatgtcta atcattatat      5100
     ttgtagtagt catttgtacc gcatgaatat cacagattca aatatttgtg aatgtaataa      5160
     gtcatatgaa gacatagatc atattgtttt tgaatgttgt cgttttgaag cacctagaga      5220
     aaaattactg gaaaatataa ttagtttggg tcttgatatt cctgtgtcag ttcgagatat      5280
     tttgggaaat cgttcattcc taatcatgaa aattttatac gaatttttaa atgaaatttc      5340
     ttatcgtgta tgatactgct cgtttttttt ctggttttac tttcagagac aacaattttg      5400
     gcactcatcc catctaatcg attggctctt tggatacgtg cttgtgaaca ttactgatga      5460
     acatactgat tgaacatgga agacttcggc tcagttatgg atcgattccg ggagagcctt      5520
     tatttaatat atattatttt ataacgttat tcgaaaagat aaagaggttt tgtgcctttt      5580
     tgagaagatt tcatttgaat atcactcaaa ggggcttttc cctctttcaa aattcataag      5640
     ttaaataaat aaataaataa ataaataaat aaa                                   5673
//
ID   I_Ele4E_AAe repbase;    DNA;    INV; 5683 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4E_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5683
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1374-1374 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >99%
CC   identity.
CC   The consensus is ~92% identical to I_Ele4F_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1593
FT                 /product="I_Ele4E_AAe_1p"
FT                 /translation="METDGDTSSVVDKDSEKSSSTIKSIRIKTYPPTYLGP
FT                 FVVFFRKKEKPINVLLISSEIYKLYKSVKEIKKISLDKLRVVFGSREDANA
FT                 LLESKLFFNSYRVYAPCDSCEINGIIYDESLDCEDILKYGSGIFKNKAISP
FT                 VRILECVRLSKLLFSDKGSSYIHSNCIKLTFSGSVLPDYVDIDNVKFRVRL
FT                 FYPKIMHCDRCLLFGHTSHFCSNKPKCLKCGGVHSPSECKKQSDSCIYCGK
FT                 KHDFLKECSVYIAHQKQFNLKIRNKNKLSYSEVIKTSDVFSTKNIFEPLSQ
FT                 INDIENSNGEPNNFVYKPPIKRKRINQSNNHNHNLNPQPSTSYDQNFPPIK
FT                 CSNTTQNIPGFQKTIPGFSENYNDNFNNVNNKSQNNDHDSDEGSILNILED
FT                 IVDFLGLNDFWKKNH"
FT   CDS           1678..5370
FT                 /product="I_Ele4E_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAPLKNTNLNILQWNCRSIIPKIDRLKALIANLEIDI
FT                 FCLNETWLVDTKLFRIPSFNIIRKDRNIAYGGVMIGIRENIEFKFLNFTFD
FT                 SPIEYVAIFVKHNGLEFSIVCLYIPPQVKFSLQNLKTILNNVPSPFYILGD
FT                 LNAHNLAWGSDITDGRGELVMNLIDELNLNILNDGSFTRVAVPPAHHSCID
FT                 LTLCSNSLSIKSSWTIINDPNGSDHLPIKISIHNPSCDQFQQEPFVPDLTK
FT                 NVDWHKFSDLVSSALINFDNSLSPLQNYNSFSKILIQCLHKSQSKNIFVGP
FT                 SKKRTPCFWWDHDCTLALKNKSDAFKKFRKSGSRDHYIFYCKTEAQFTRVT
FT                 KFKKRNYWKTFIENLDSETSLTKLWSVARNLRNYNIPSASISEYSEDWIDQ
FT                 FASKICPDFVPTPITFKSHQCYNYYPDLCNKFSIEEMELALTITNNTAPGI
FT                 DNIKFIVLKNLPIDGKLHLLSLYNSFLFQNIFPLEWRSIKVISLLKPDKNP
FT                 SLVDSRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQYGFRKGRGTR
FT                 DCIALLASHIELSFNKKQDVVSTFLDVSGAYDSVLIDLLFNKMNDCKIPII
FT                 ISNFLCNLFSFKIMHFYHNGSSRMVRYSYFGLPQGSCLSPFLYNLFTRDII
FT                 SIIPNGCYFIQFADDNVIFINGKNREIIRHYMQISLDNIHTWAHNNGFTFS
FT                 VQKTKFILFSRKHSPVSIDLFLNNHQIEQVFDYKYLGIWFDSKLKWNNHIQ
FT                 YVQKICSKRVNFLRMITGTWWGAHPNDLITLYKTTIRSVMEYGCFSFGSAV
FT                 QTHFSKLEKIQLRCLRISLKLMNSTHTKSVEVLAGIIPLKNRILELNCKFL
FT                 IHCFSINHPLIDILKSLFEINPSNRMLNSFIYCSSENIIPNYSPGFHDYNI
FT                 DIHSFRPNIDFSLYEELKQFPCHVQSYYANMIFKRKFIGVENDQIFFTDGS
FT                 LIENVAGFGVYNFHLAHFYKLDSPCSIFTAELTALYFTCSLIKNCAPNIFV
FT                 VCSDSFSCLQAFNSNKFHFKTHHIVLSIKGLLHNLYSKGYLIKFVWVPAHC
FT                 NIYGNEQADLLAKLGVSRGIIYNRGINYFEYFSNLKKSTINDWQISWNTSD
FT                 QGRYCYSICPKVKIYPWFKYFSVGRNFICTFSRLMSNHYICNCYLYRMNII
FT                 DSNICECNKTYEDIDHIVFKCSRFNVPREKFFDRISSLSNDIPVSVRDILG
FT                 NYNLPILKILYQYLCEISYHV"
XX
SQ   Sequence 5683 BP; 1828 A; 844 C; 853 G; 2158 T; 0 other;
     catcttcggt aagtaggcct tgaccgggtt acaggtcttt tttctgcgct tgtcattttt        60
     tttttcgttt caggtgattt tctacccgaa gtattgttat ttgaagataa ttgcctttgc       120
     ttgctgattg ctggttggat ttgcgtaaag agaggaataa gtgtactgca agcttcaaat       180
     cacaagactc ctggttgttg ctggtgatac aagccgattg acgtttttga gtgctgttgc       240
     tggtgtcact gaagtttatt ggcgtttgtt aagtatttgt tttcgttttt gattagatat       300
     ttttttttat tttattattc atttggtgtt tgcttagttt aaattcgtcc ccgtcatttt       360
     tccataatgg aaactgacgg ggatacatct tctgtagtag ataaagattc tgaaaaatct       420
     tcatctacga taaaatctat tcgtatcaaa acatatcctc ctacatatct tggccccttt       480
     gttgtgtttt tccgtaaaaa agaaaaacca atcaacgttc ttttaatttc atcagaaatt       540
     tataaattat ataaatctgt taaagaaatc aaaaagattt ctcttgacaa attacgtgtg       600
     gtttttggat ctcgagaaga cgctaatgcg ttattagagt ccaaattgtt ttttaattca       660
     tatagagtct atgctccatg cgactcatgt gaaataaatg gtataattta tgacgagtct       720
     ttagattgtg aggatatttt aaaatatggt tctggtattt ttaaaaataa agctatttcc       780
     ccagttagaa ttttagaatg tgttcgatta tcgaaattac ttttttccga taaaggatcc       840
     tcgtacattc attctaattg tatcaaatta acattttcag gatctgtcct tcctgattat       900
     gttgatattg ataacgttaa atttcgtgtt aggctctttt atccaaaaat catgcattgc       960
     gaccgttgcc ttttatttgg ccatacgtcg catttttgct ccaataaacc aaaatgctta      1020
     aaatgtggtg gagtacattc tccatctgaa tgtaagaagc aatctgatag ttgcatttat      1080
     tgtggtaaaa agcatgattt tttgaaagaa tgttcagttt acatagccca tcagaaacaa      1140
     tttaatttga aaattagaaa taaaaataaa ttatcctatt cggaagttat taaaacttct      1200
     gatgtgtttt ctactaaaaa tatttttgaa cctttgtctc aaatcaatga cattgagaat      1260
     tcaaatggag agcctaacaa ttttgtttat aaaccaccta ttaaaagaaa aagaataaat      1320
     caatctaata accataacca taatttaaat cctcaaccat caacttctta tgatcagaat      1380
     ttccctccta ttaaatgttc aaacacaact caaaatattc ctggttttca gaaaactatt      1440
     cctggttttt ctgaaaacta caatgacaat tttaacaatg tcaataataa atctcaaaat      1500
     aatgaccatg atagtgatga gggtagtatt ttgaatattt tagaagatat tgtggatttt      1560
     ttgggactca atgatttttg gaaaaaaaat cattaaaaaa tgtttaccct ttttagcgaa      1620
     aattcttgaa aaattgaatt catttggacc cctcattagt tctttatttt gttcttaatg      1680
     gctccattaa aaaatacgaa cttgaatatt ttacaatgga attgtcgtag tataattcca      1740
     aaaattgata gacttaaagc tttaatagca aatttagaaa ttgacatatt ttgtttaaat      1800
     gaaacatggt tagttgatac taaacttttt cgaattcctt ctttcaatat aattcgaaaa      1860
     gatcgtaaca tagcttacgg gggtgttatg attgggattc gtgaaaacat tgaatttaaa      1920
     tttctgaatt tcacatttga ttcgccaatt gaatatgtgg ctatttttgt caaacataac      1980
     ggtttggaat tttcaattgt atgtttatat attccacccc aagtaaaatt tagcttacaa      2040
     aatttgaaaa caattttgaa taatgttcct tcaccatttt atatacttgg tgatctaaat      2100
     gctcataatt tagcttgggg tagtgacata actgatggta gaggtgaatt agttatgaat      2160
     ttaattgatg aattaaattt aaatattctg aatgatggat ctttcactag agttgcggtc      2220
     ccgcctgctc atcattcttg tatagattta acactttgtt caaatagttt gtccataaaa      2280
     tcttcttgga ccatcataaa tgatccaaat ggtagtgatc atttacctat aaaaatatca      2340
     attcataatc cttcgtgtga ccaatttcag caagaacctt ttgttccgga tttaactaag      2400
     aatgtggatt ggcataaatt ttctgacttg gtttcgtctg ccttaatcaa ttttgataat      2460
     tcactttcac ctcttcaaaa ttataacagt ttttcaaaaa ttttaattca atgtttacat      2520
     aaatctcaga gcaaaaacat atttgtaggt ccttctaaaa aaagaactcc ttgtttttgg      2580
     tgggatcatg attgtacttt agcacttaaa aataaatcag atgcattcaa aaaatttcgg      2640
     aaatcagggt ctagagatca ctatattttc tattgcaaaa ctgaagctca gtttactcga      2700
     gttacaaaat ttaagaaaag aaattattgg aaaactttta tagaaaatct tgattcagaa      2760
     acatcattaa caaaattatg gtcagttgct agaaatttaa ggaattataa tattccttct      2820
     gcatcaattt cagaatattc agaagattgg attgaccaat ttgcttctaa aatttgtcca      2880
     gatttcgttc ctacccctat cacattcaaa agtcatcaat gttacaatta ttatcctgat      2940
     ctttgtaata aattttcaat tgaggaaatg gaattggcat taactattac taacaatact      3000
     gctccaggca ttgataatat taaatttatc gtcttaaaaa atttacctat cgatggtaaa      3060
     ttacatttac tttcattata taattcattt ttgtttcaga atatttttcc tttagaatgg      3120
     cgttctatta aagtaattag tttacttaaa cctgataaaa atccttcatt agtagatagt      3180
     agaagaccca ttagtttatt atcgtgcctt cgtaaactaa tggaaagaat gattttaaat      3240
     cgacttgaat tgtgggctga gaaaaataat attttttcat cctctcaata cggatttaga      3300
     aaaggccgtg gaactagaga ttgtattgcc ttacttgctt cacatattga attatcgttc      3360
     aacaaaaaac aagatgtagt ttcaactttt cttgatgttt ctggtgcata tgattctgta      3420
     ttgattgatt tattgtttaa taaaatgaac gattgtaaaa ttcccatcat catttccaat      3480
     tttctgtgta atttattctc cttcaaaata atgcattttt accataatgg atcatcaaga      3540
     atggtccgtt atagttattt cggtttacca cagggctctt gcttgagccc atttttatat      3600
     aatctattca ccagagacat catttccatc attcctaatg gatgttattt tattcaattt      3660
     gccgatgata atgtaatttt tatcaatggc aagaatagag aaattattcg tcactatatg      3720
     caaatttctt tagataatat tcacacctgg gcacataata atggtttcac attttcagtt      3780
     caaaaaacaa aattcatatt attttctcgc aaacattctc cagttagtat tgatttattt      3840
     ctcaataatc atcaaattga acaagttttt gattataaat atcttggtat atggtttgat      3900
     tcgaaattga agtggaataa tcatattcaa tatgtccaaa aaatttgctc caaaagagtt      3960
     aattttcttc gaatgattac tggaacatgg tggggtgccc atcccaatga tttgattaca      4020
     ctttataaaa caactattcg ttcagtaatg gaatatggtt gtttttcttt tggaagtgct      4080
     gttcaaacac atttttccaa acttgagaaa attcaactgc gttgcttaag aattagttta      4140
     aaattaatga attctactca taccaaatcg gttgaagtac ttgctggtat tattccactc      4200
     aaaaaccgca ttcttgaatt gaactgcaaa tttttaatac actgtttttc aattaatcat      4260
     ccactaattg atatattaaa atccttattt gaaataaatc ctagtaacag aatgttgaat      4320
     tcgtttattt attgttcttc agaaaacatt attccaaatt attcgcctgg ttttcatgat      4380
     tataacatag atattcattc ctttcgtcct aacattgatt tttctttata cgaagaattg      4440
     aaacaatttc cttgtcacgt gcagtcctat tatgctaata tgatatttaa acgaaaattc      4500
     attggggtgg agaatgatca aatatttttt acagatggtt cgttgattga aaatgtggca      4560
     ggctttggag tgtacaattt tcatttggcc catttttata aattagattc tccttgctcc      4620
     atttttacag ctgaactaac tgctttatat tttacatgca gtttaattaa aaactgtgct      4680
     cctaatatat ttgtggtgtg ctcagatagt tttagttgtt tgcaagcttt caattccaac      4740
     aaatttcatt ttaaaaccca tcatattgtc ttgtcaataa aagggttatt gcacaattta      4800
     tattctaaag gatatttgat taaatttgtt tgggttccag ctcattgcaa tatttatggc      4860
     aatgaacaag cagatttatt agcaaaattg ggtgtttcac gtggtataat atataatcgt      4920
     ggtataaatt attttgaata tttttctaat ttaaaaaaat ctactataaa tgattggcaa      4980
     atttcttgga atacaagtga ccaagggcga tattgttatt ccatttgtcc aaaggtaaag      5040
     atatatcctt ggttcaaata cttttcggtt ggacgtaatt ttatatgtac cttctctaga      5100
     ttaatgtcca atcattacat ttgcaattgc tatttatacc gtatgaatat tatagattct      5160
     aatatttgtg aatgcaataa aacatatgaa gatatagatc atattgtatt taaatgttct      5220
     cgattcaatg tgcccagaga gaaatttttt gacagaatca gtagtttgag taatgatatt      5280
     cctgtatctg tccgtgatat attgggaaat tataacctac caatattgaa aattttgtat      5340
     caatatttgt gtgaaatttc ttatcatgtt tgatacttgc tgccttgttt tctatttcat      5400
     tttcaggtac tccaagtttg gcctccattc gtgtcgttga ctggcatcgt gaatacgctt      5460
     gggaggacct tcatgatgat ttatccagat aattcggctc tgtgatggat ccattccgaa      5520
     tgagccttta tttttaattt tcattttata acgttttatt agaaaagata aagaggtttt      5580
     gtgccttttt gagaacgatt tcgaaaagga aatcactcaa agaggctttt ccctctttca      5640
     aaattattga gttaataaat aataataata ataataataa taa                        5683
//
ID   I_Ele4F_AAe repbase;    DNA;    INV; 5687 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-6_AAe;
KW   I-6B_AAe; I-6C_AAe; I-6D_AAe; I_Ele4F_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5687
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1375-1375 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >99%
CC   identity.
CC   The consensus is ~92% identical to I_Ele4E_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           384..1685
FT                 /product="I_Ele4F_AAe_1p"
FT                 /translation="METDGDIVSVVDKDSDKSSSTVKPIRIKTYPSTYLGP
FT                 FVVFFRKKEKPINVLLISSEVYKLYKSVKEIKKISLDKLRVVFGSREDANA
FT                 LLESKLFYNSYRVYAPCDSCEINGIIYDESLDCEDVLNYGSGVFKNKTISP
FT                 VKILECVRLSKLLFSDKGSSYTHSNCIKLTFSGSVLPDYVDIDNVKFRVRL
FT                 FYPKIMHCDRCLLFGHTSHFCSNKPKCLKCGGVHSPSECKKQSDSCIYCGK
FT                 KHEFLKECSVYIAHQKQFNLKIKNKNKSSYSEVIKTSDVFSTKNMFEPLSQ
FT                 NNDLNLNEEPNNFVYKPPIKRKRINKSNNHNHNLNPQPSTSYDQNFPPIKC
FT                 SSSTQNIPGFQKTTPGFSGNHNDFNKNNNKSHNYEHDGDEGSILNILEDIV
FT                 NFLGLNDFWKKIIEKCLPFLAKILEKLNSFGPLISSLFCS"
FT   CDS           1688..5380
FT                 /product="I_Ele4F_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASFKNSNLNILQWNCRSVIPKIDRLKALIANFDIDI
FT                 FCLNETWLIDTKFFRIPSFNIIRKDRNIAYGGVMIGIRENIEFKFLNFIVD
FT                 SPIEYVAILVKHKGLEFSIVCLYIPPQAKFSLQNLRTILNNVPSPFYVLGD
FT                 LNAHNLAWGSDITDGRGELVMNLIDELNLNILNDGSFTRVAVPPANHSCID
FT                 LSLCSNNLSIRSSWSIINDPNGSDHLPIKISIHDPSRDQFQHEPFVHDFTK
FT                 NVDWNKFSDLVSSALINFDNSLPPLQNYNSFSKILIQCLHKSQSKKIFLGP
FT                 SKKRPPCFWWDHDCTLALKNKSNAFKKFRKSGSRDHYIFYCKTEAQFTRVI
FT                 KFKKRNYWKTFIENLDSETSLTKLWAVARNLRNYNIPSTSILEYSEDWIDQ
FT                 FASKICPDFVPTPITFKKHQCYNYYPDLCNKFSIEEMELALTITNNTAPGI
FT                 DNIKFIVLKNLPIDGKLHLLSLYNSFLFQNIFPMEWRSIKVVSLLKPDKNP
FT                 SLVESRRPISLLSCLRKLMERMILNRLELWAEKHNIFSSSQYGFRKGRGTR
FT                 DCIALLASQIELSFNKKQDVVSTFLDVSGAYDSVLIDLLFNKMNDCKIPII
FT                 ISNFICNLFSFKIMHFFHNGSSRMVRYSYFGLPQGSCLSPFLYNIFTRDII
FT                 SIIPNGCYFVQFADDNVIFINGKNREIIRHYMQNSLDNIHTWAHNNGFTFS
FT                 AQKTKFILFSRKHSPVHIDLFLDNHQIEQVFDYKYLGIWFDSKLTWNNHIQ
FT                 YVQKICSKRINFLRMITGTWWGAHPNDLITLYKTTIRSVMEYGCFAFGSAV
FT                 QTHFSKLEKIQLRCLRISLKLMNSTHTKSVEILAGIIPLKNRIFELNCKFL
FT                 IHCFSINHPLIDILKSLFEINSSNRMLKSFIYCSSENIIPNSSPGFHEYSI
FT                 DIHSFCPYIDFSLYEELKQIPYHVHSNYANMLFKRKLIGVDNXQIFFTDGS
FT                 LIGNVAGFGVYNFHLAHFYKLDSPCSIFTAELTAIYFACSLIKNYAPNIFV
FT                 VCSDSFSCLQTLNSSKFHFKTHHILLSIKGLLHNLYSKGYMIKFVWVPAHC
FT                 NIYGNEQADLLAKLGVSRGIIFNRDIQHFEYFSNLKKYTLNNWQISWNTSD
FT                 QGRYCYSICPKVKVYPWFRYFSVGRNFICTFSRLMSNHYICKCYLYRMNII
FT                 DSNICECNETYEDIDHIVFRCSRFNLPREQFFDRISSLGYDIPVSVRDILG
FT                 NHNLPILKLLYQYLCGISCFV"
XX
SQ   Sequence 5687 BP; 1797 A; 826 C; 881 G; 2182 T; 1 other;
     cgatcactat tatggttcat cttcggtaag taggccttga ccgggttaca ggtctttttt        60
     tctgcgcttg tcattttttt tcgtttcagg tgaatttcta ccccgaagta ttgtcctttg       120
     aaggtgattg cttttgcgtg ttggttgctg attagaattg cgtaaacaga ggaataagtg       180
     tgctgcaaaa cttcaaatcg caagactcct ggttattgtt ggtgatacaa gccgtttgtc       240
     gtttttgagt gctgttgctg gtgtcactga agtttattgg cgtttgttaa gtatttgttt       300
     tcatttttag ttagattagt gtttcatttt attatttttt cggtgtttgc ttagttgaat       360
     ttcgtccccg tcatttttcc attatggaaa ctgacgggga tatagtttct gtagtagata       420
     aagattctga caaatcttca tctacggtta aacccattcg cattaaaacc tatccttcta       480
     catatcttgg tccttttgtt gtgtttttcc gtaaaaaaga aaaacctatt aacgttcttt       540
     taatttcgtc agaagtttat aaattatata aatctgtcaa agaaatcaaa aagatttctc       600
     ttgacaaatt gcgggtcgtt tttggatctc gtgaggacgc taatgcgtta ttagagtcca       660
     aattgtttta taattcatat cgagtctatg ctccatgcga ctcatgtgaa ataaatggta       720
     taatttatga cgagtcatta gattgtgagg atgttttaaa ttatggctct ggtgtattca       780
     aaaataaaac gatttcccct gtaaaaattt tagaatgtgt tcggttatct aaattacttt       840
     tttccgataa aggttcctca tatactcatt cgaattgtat aaaattaaca ttttcaggat       900
     ctgtccttcc tgattatgtg gacattgata atgttaaatt tcgcgttagg ctcttttacc       960
     caaaaatcat gcattgtgat cgttgccttc tttttggcca tacatcacat ttttgctcca      1020
     ataaaccaaa atgtttaaaa tgtggtgggg tacattctcc atctgaatgt aaaaaacaat      1080
     ctgatagttg catttattgt ggcaaaaagc atgaattttt gaaagaatgt tcggtttata      1140
     tagcacatca gaaacaattc aatctaaaaa taaaaaataa aaataaatca tcttattcgg      1200
     aagttattaa aacttctgat gtgttttcaa ctaaaaatat gtttgaacct ttatctcaaa      1260
     acaatgacct taatttgaat gaggaaccta ataattttgt atataaacca cctattaaaa      1320
     gaaaaagaat aaataaatca aataaccata accataattt aaatccacaa ccttcaactt      1380
     cttatgatca gaattttcct ccaatcaaat gttcaagctc aactcaaaat attcctggtt      1440
     ttcagaaaac tactcctggt ttttctggta atcataatga ctttaacaag aacaataata      1500
     aatctcataa ttatgagcat gatggtgatg agggtagtat tttgaatatt ttggaagata      1560
     ttgtgaattt tttgggattg aatgattttt ggaaaaaaat cattgaaaaa tgtttaccct      1620
     ttttagcaaa aattcttgaa aaattgaatt catttggacc cctcattagt tccttgtttt      1680
     gttcctaatg gcttcattca aaaatagtaa cttgaatatt ttacaatgga attgtcgtag      1740
     tgtcattcca aaaattgata gacttaaagc tttaatagca aattttgata ttgatatatt      1800
     ttgtttaaat gaaacatggt tgattgatac taaatttttt cgaattcctt cattcaatat      1860
     aattcgtaaa gatcgtaaca tagcttatgg gggtgttatg atcgggattc gtgaaaacat      1920
     tgaatttaaa tttttgaatt ttattgttga ttcgccaatt gaatatgtgg ctattttagt      1980
     caaacataaa ggtttggaat tttcaattgt atgtttgtat attcctcccc aagcaaaatt      2040
     tagcttacaa aacctcagaa caatattgaa taatgttcct tcaccatttt atgtacttgg      2100
     tgacctaaat gctcataatt tagcttgggg tagtgacata actgatggta gaggtgaact      2160
     agttatgaat ctaattgatg aattaaattt aaatattctg aatgatggat ctttcactag      2220
     agttgcggtc cctcctgcta atcattcttg tatagatttg tcgctttgtt caaataattt      2280
     gtccataaga tcttcttggt ccatcattaa tgatccaaat ggtagtgatc atttacctat      2340
     taaaatatca attcatgatc cttcgcgtga tcagtttcag catgaacctt ttgttcatga      2400
     tttcactaaa aatgttgatt ggaataaatt ttcagattta gtttcttcag ctcttatcaa      2460
     ttttgataat tcgcttccac ctcttcaaaa ttataacagt ttttcaaaaa tcttaattca      2520
     atgtttacat aaatctcaga gcaaaaaaat atttttaggt ccttctaaaa aaagacctcc      2580
     ttgtttttgg tgggatcatg attgtacttt agcacttaaa aataaatcaa atgcattcaa      2640
     aaaatttcga aaatctggat ctagggatca ctatattttc tattgtaaaa ctgaagctca      2700
     gtttactcga gttataaaat ttaaaaaaag aaattattgg aaaactttta ttgaaaatct      2760
     tgattctgaa acatcattaa ctaaattatg ggcagttgct cgaaatttaa ggaattataa      2820
     tattccttct acatctattt tggaatattc agaagattgg attgatcaat ttgcttctaa      2880
     aatttgtcca gatttcgttc ctacccccat cacattcaaa aaacatcaat gttacaatta      2940
     ttatcctgat ctctgcaata aattttcaat tgaggagatg gaattggcat taactattac      3000
     taacaacact gctcctggca ttgataacat taaatttatt gttttaaaaa atttaccgat      3060
     tgatggtaaa ttacatttac tttctttata taattcattt ttgtttcaga atatttttcc      3120
     tatggaatgg cgttctatta aagtagttag tttacttaaa cctgataaaa atccttcatt      3180
     agtagaaagt agaagaccta ttagtttatt atcgtgcctc cgtaaactga tggaaagaat      3240
     gattttaaat cgtcttgaat tgtgggctga gaaacataat atattttcat catctcaata      3300
     cggatttaga aaaggtcgtg gaactcgaga ttgtattgct ttacttgctt cacaaattga      3360
     actatcgttc aataaaaaac aggatgtagt ttcaacattt ctggatgttt ctggtgcata      3420
     tgattctgta ttgattgatt tattgtttaa taaaatgaac gattgtaaaa ttcctatcat      3480
     catttccaat tttatatgta atttattttc tttcaaaata atgcattttt tccataacgg      3540
     atcttcaaga atggtccgtt atagctattt cggtttacct cagggttctt gtttaagccc      3600
     gtttttatat aacatattca ccagagacat catttccatt attcctaatg gatgctattt      3660
     tgttcaattt gcggatgata atgtcatttt tatcaatggc aagaatagag aaattattcg      3720
     tcactatatg caaaattctt tagataatat tcacacttgg gcacataata atggttttac      3780
     attttcagct caaaaaacaa aatttatatt attttctcgc aaacattctc cagttcatat      3840
     tgatttgttt cttgataatc atcaaattga acaagttttt gattataaat atcttggtat      3900
     atggtttgat tcgaaattga cgtggaataa tcatattcaa tatgtccaaa aaatttgttc      3960
     taaaagaatt aattttcttc gtatgattac tggtacatgg tggggtgctc atccaaatga      4020
     tttgataaca ctttataaaa caactattcg ttcagtaatg gaatatggtt gttttgcttt      4080
     tggaagtgct gtacaaacac atttttccaa acttgaaaaa attcaacttc gttgtttgag      4140
     aattagttta aaattaatga attctactca taccaaatct gttgaaatac ttgctggtat      4200
     tattccactg aaaaatcgta tttttgaatt gaactgtaaa tttttaatac attgtttttc      4260
     aattaatcat ccgctaattg atatattaaa atccttattt gaaataaatt ctagtaatag      4320
     aatgttgaaa tcgttcattt attgctcttc agaaaacatt attccaaatt cttcaccagg      4380
     ttttcatgaa tatagtatag atattcattc cttttgtcct tacattgatt tttctttata      4440
     cgaagaatta aaacaaattc cttatcacgt tcattcaaat tatgctaata tgttatttaa      4500
     acgcaaattg attggggtgg ataatwatca aatatttttt acagatggtt ctctgattgg      4560
     aaatgtagca gggtttggag tgtataattt tcatttggcc catttttata aattagattc      4620
     tccctgttca attttcacag ctgaattgac tgctatatat tttgcatgca gtttaattaa      4680
     aaattatgca cctaacatat tcgtggtgtg ttcagatagt tttagttgtc tgcaaacttt      4740
     aaattctagt aaatttcatt ttaaaaccca tcatattctc ttgtcaataa aagggttatt      4800
     gcataattta tattctaaag gatatatgat taaatttgtt tgggttccag ctcattgtaa      4860
     tatttatggc aatgaacaag ctgatttatt agcgaaattg ggtgtttcgc gtggtataat      4920
     attcaatcgt gatatacaac actttgaata tttttctaat ttaaaaaaat atactctaaa      4980
     taattggcaa atttcatgga atacaagtga ccaagggaga tattgctatt ccatttgtcc      5040
     aaaggtaaag gtatatccct ggtttagata cttttcggtt ggacgtaatt ttatttgtac      5100
     cttctctaga ttaatgtcca accattacat ttgtaaatgt tatttatacc gtatgaatat      5160
     tatagattca aatatttgtg aatgtaatga aacatatgaa gatatagatc atattgtatt      5220
     tcgatgttct cggttcaatt tacctagaga gcaattcttt gacagaatca gtagtttggg      5280
     ttatgatatt cctgtatctg tccgagacat tttgggaaat cataacctac caatattgaa      5340
     attgttatat caatatttgt gtggaatttc ttgttttgtt tgatacttgc tgctttgttt      5400
     ttctttttta ttttcagata taacaagttt ggcctccatt tgtgttgtcg ataggcatcg      5460
     tggatacgcg tgggaggacc tatatgacga tttttccgga tgattcggct ctgtgatgga      5520
     tccattccga atgagcctgt agttttaata tttattttat aacgttctat tagaaaagat      5580
     aaagaggttt tgtgcccttt tgagaaagat ttcgaaagga aatcactcaa aggggctttt      5640
     ccctctttca aaattattga gttaataaac aataacaata acaataa                    5687
//
ID   I_Ele4G_AAe repbase;    DNA;    INV; 5682 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A I non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele4G_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5682
RA   Kojima K.K. and Jurka J.;
RT   "I non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1376-1376 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
CC   The consensus is 77% identical to I_Ele4.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..1660
FT                 /product="I_Ele4G_AAe_1p"
FT                 /translation="METDGESVSVVDSVSKXSSSTVKHIRVKTYPTTFLGP
FT                 FVVFFRKKEKPINVLLISSEIYKLYKSVKEIKKISLDKLRVVFGSREDANA
FT                 LLESKLFLNSYRVYAPCDSCEINGIIYDEALECDDIVNHGSGVFKNQAISP
FT                 VKILECVRLSKLTFSDKGSSYTHSNCIKITFEGSILPDYVIIDNVKFHVRL
FT                 FYPKIMHCDRCLLFGHTSHFCSNKPKCSKCGGVHPPSDCKKNSDGCIYCGK
FT                 KHNLLKECSVYIAHQQQFNLKIKNKNKLSYSDVIKTSDGIASHNIFEPLSE
FT                 NNCNENLKEETNNFVYKPPVKRKRNNKSNNHNHILEPQPSTSYDKNFPPMN
FT                 SSNTTQNIPGFQKSNTXFSGNKFDGSNNIKNNSQDNGNKXNDANILNILED
FT                 IIEFLGLNDFWKNLIRKFLPFLANILEKLNSFGPLISSLFCS"
FT   CDS           1663..5355
FT                 /product="I_Ele4G_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAQXNNQSLNILQWNCRSIIPKVDRLKALLLNNGVDI
FT                 FCLNETWLVDTKSLRIPFFNIIRRDRNISYGGVMIGIRENVQFKFLEFSLD
FT                 SQIENVSISVKHNDIEFSIICLYIPPQARFSLQELKTILNSVPSPFYILGD
FT                 LNAHHFAWGSDMTDGRGSLIMDLIDELNLNILNDGSFTRIAVPPARHSCID
FT                 LSLCSNSLYIKSSWKIIDDPNGSDHLPIKISIHNPVRGQLSXEPYVHDLTK
FT                 NVHWNKFSDLVSSALNKFDYSLSPLQNYDSFSXILIECLYKSQCKQIKLGP
FT                 AKRKHISFWWDNDCTIALKNKSNAFKQFRRSGSREHYIFYCKTEAQFTRVT
FT                 KFKKRDYWRNFVENLDPETSLSELWSVARNLRNYNIPSTSVLEYSEDWIDQ
FT                 FASKICPDFVPPPITFKNQQRYNYFPELCNEFTIEEMDLALSITNNTAPGI
FT                 DNIKFIVLKNLPIDGKLHLLSLYNLFLFQNIFPLQWRSIKVVSXLKPDKNP
FT                 SLVDSRRPISLLSCLRKLMERMILNRLELWAEKNNILSSSQFGFRKGRGTR
FT                 DCVGLLASYIELSFNKKQDVVTTFLDVSGAYDSVLIDLLFSKMXDCKIPII
FT                 LXNFLCNLFSFKIMHFYHNGSPRXIRYSYFGLPQGSCLSPFLYNLFTRDII
FT                 SIIPNGCYFIQFADDKNISITGQNREVIRHFMQLALDNIDTWAHNNGFTFS
FT                 AQKTKFILFSRKHSPVSIELFLNSHRIDQVFDYKYLGIWFDYKLKWNSHIQ
FT                 YIQKICSKRINFLRMITGTWWGAHPXDMITLYKTTIRSVMEYGCFTFGSAV
FT                 QTHFSKLEKIQFRCLRICLKLMNSTHTKSVEVLAGIIPLRNRLHELNCKFL
FT                 INCFSNNHPIIDLLKSXFEINPTNKILHSFLYCSGETIIPNSTPGFYEYSM
FT                 NVHAFRPCIDLSLLEELKQIPCHXHFRFANMLFNRKFIGVEQNQIFFTDGS
FT                 LVGNMAGFGVFNINLAHFYKLESPCSVFTAELTALYFTCNLIKNSAPNIYM
FT                 VCSDSLSCLNALNXSNFHFKTHRTVLSIKNLLHNLYSRGYVIKFVWVPAHC
FT                 NIYGNEQADLLAKLGVFRGITYNRDICDFEYFTKLKKYSLNNWQLSWNTSI
FT                 QGRYCYSILPKVKAVPWFKNLYVGRNFICSLSRLMSNHYICNSYLYRMNII
FT                 DSDICECNESYEDIDHIVLKCSRFNGPREKFLDNIIRLGFDIPVSVRDILG
FT                 NKYLPILKILYKYLYDISYHV"
XX
SQ   Sequence 5682 BP; 1727 A; 849 C; 905 G; 2162 T; 39 other;
     catcttcggt aagtaggcct tgaccgggtt acaggtcttt ttttctgcgc ttgtcaattt        60
     ttttctattt tcaggtgaat ttctaccccg aagttttgcg atctaaggcg tttggatttt       120
     gagtgtaatw cactggaagm gaaggtgtgc tgtatcgttg ggaagctttg wtttgcaaga       180
     tttctcgtag ctgttggtgw ttccagccgt tgacgktttt cgattgctgt tgttggcgtt       240
     gccgmagttm atttttgctc gttaagtatt attttatttt cttttgttgt ttttttattt       300
     ggtttttata ctggtgtaat cgawttttta ctatccccgt catttttcca ttatggagac       360
     tgacggggag tcagtttctg ttgtggatag tgtatctaaa gamtcttctt ctactgttaa       420
     acacattcgc gtgaaaactt atcctactac ctttctgggt ccctttgtgg tattttttcg       480
     taaaaaagaa aaaccaatwa atgtcctttt gatttcctct gagatttaca aattgtataa       540
     atctgtcaag gaaatcaaaa agatttccct tgataaattg agggttgttt ttggatctcg       600
     wgaagacgct aatgcgttgt tagagtccaa attatttttg aattcatatm gagtctacgc       660
     tccatgtgac tcatgtgaaa ttaatggcat aatttatgac gaagctttag agtgtgatga       720
     tattgtaaat catggttctg gagttttcaa aaatcaggca atttctcctg tgaaaatttt       780
     agaatgtgtc cgtttatcta aattaacctt ttcagataaa ggatcatcct atacacattc       840
     taattgtatc aagataacat ttgaaggatc tattcttcct gattatgtta ttattgataa       900
     tgtgaaattt cacgttagat tattttatcc caaaattatg cattgtgatc gttgtcttct       960
     ttttggacac acatcacatt tttgttctaa taaaccaaaa tgttccaaat gtggtggagt      1020
     tcatcctcca tctgattgta agaaaaattc tgatggttgt atttattgtg ggaagaaaca      1080
     taacttgttg aaggagtgtt cagtttatat tgcacatcaa caacaattta atctgaaaat      1140
     taaaaataaa aataaattat cttattcaga tgttattaaa acttccgatg gtattgcctc      1200
     tcataatatt ttcgaacctt tatctgaaaa taattgcaat gaaaatttaa aagaggaaac      1260
     aaataatttt gtttataaac ctcctgtaaa aagaaaaaga aataataaat ctaacaatca      1320
     caaccacatt ttggaaccac aaccttcaac atcttatgac aaaaattttc ctcccatgaa      1380
     ttcttctaat acaactcaga atattcctgg tttccagaaa agtaataccw tattttctgg      1440
     aaataaattt gatggtagca ataatattaa aaataattct caggataatg ggaataaaam      1500
     taatgatgct aacattttga acattttgga agatattatt gagtttttgg gattaaatga      1560
     tttttggaag aacctgatta ggaagttttt accatttttg gccaatattc ttgaaaaatt      1620
     gaattcattt ggaccactca taagttcctt gttttgttcc taatggctca awtcaataat      1680
     caaagcttga atattttaca atggaattgt mgaagtatta ttccaaaagt tgatcgactt      1740
     aaagctttac ttttaaacaa tggtgttgat atattttgtt taaatgaaac gtggttagta      1800
     gatactaaaa gcttaagaat tccttttttt aatataatcc gaagggatcg taatatttca      1860
     tatggagggg ttatgattgg aattcgtgaa aatgttcaat tcaaattttt agaattttca      1920
     ttggactctc aaattgaaaa tgtttctatt tctgtcaaac ataatgatat tgaattctcg      1980
     attatttgtt tatatattcc tccccaagca agattttctc tacaagaact taaaactatc      2040
     ttaaactctg ttccttctcc attttatatt cttggtgact tgaatgctca tcattttgct      2100
     tggggcagtg atatgaccga tggtagagga tcattaataa tggatctaat cgacgaatta      2160
     aatttaaata ttttgaacga tgggtcattt actagaattg ctgtgcctcc tgctcgccat      2220
     tcctgtattg atttatcgct ttgttcaaat agtttgtaca ttaaatcgtc ttggaaaata      2280
     attgatgatc ctaatggtag tgatcattta cccattaaaa tttccattca taatcctgtc      2340
     cgtgggcaat tgagtmcaga accttatgtt catgatttga cgaaaaatgt acattggaat      2400
     aaattttcgg acttggtttc ttctgctttg aataagtttg attattcgct ttcacccctt      2460
     caaaattatg atagtttttc amaaatttta attgaatgtt tatataaatc acaatgcaaa      2520
     caaatwaaat tggggccagc gaaaaggaaa cacatttctt tttggtggga taatgattgt      2580
     acmattgcwt taaaaaataa atcaaatgct tttaaacaat ttaggcgttc aggatcaaga      2640
     gagcattata ttttttattg caaaactgaa gctcagttta ctcgagttac taaatttaag      2700
     aaaagagatt attggagaaa ctttgttgaa aatcttgatc ctgaaacatc tttatctgaa      2760
     ttatggtctg ttgctcgaaa tttgagaaat tacaatattc cttctacatc tgttctggaa      2820
     tattcagaag attggatcga tcaatttgct tctaaaattt gtcctgattt tgtccctccw      2880
     cccatcacwt ttaaaaatca gcaacgttat aattatttcc ctgaactttg taacgaattt      2940
     actatagagg aaatggattt ggcactatct attaccaata acactgctcc aggtattgat      3000
     aatattaaat tcattgtgtt gaaaaattta cccattgatg gtaaattaca tttactttcc      3060
     ttatataatt tattcttgtt tcagaatata tttcctttgc aatggcgttc tataaaagta      3120
     gttagtmttc ttaaacctga taaaaatcct tcattagtag atagtagaag accgatcagc      3180
     ttattatcgt gtcttcgtaa gttaatggaa agaatgattc tcaatcgcct tgaattgtgg      3240
     gctgagaaaa ataatattct ttcatcttct caatttggat tcaggaaagg tcgtggaact      3300
     cgtgattgtg ttggcctttt agcttcatat attgaattat cgttcaataa aaaacaagat      3360
     gtagttacta cmttccttga tgtttctggt gcatatgatt ctgttttaat agatttactt      3420
     tttagtaaaa tgmttgattg taaaattcca atcatccttw ctaatttctt atgcaatttg      3480
     ttttctttca aaataatgca tttttaccat aacggatctc cwagawcgat tcgttatagt      3540
     tattttggat tgccacaggg ttcttgttta agcccatttc tatacaattt attcaccaga      3600
     gacataatwt ccattattcc gaatggatgt tattttattc aatttgctga tgataagaac      3660
     atttctataa ctggccaaaa tagagaagta attcgtcact ttatgcaact tgctttggat      3720
     aatattgata catgggcaca taataatggt tttacttttt cagctcaaaa aacmaaattt      3780
     atattatttt ctcgcaagca ttctccagtt agtattgaat tgtttctcaa tagtcatcgc      3840
     attgatcaag tttttgatta caaatatctt ggtatatggt ttgattataa attgaaatgg      3900
     aacagtcata ttcaatatat ccaaaaaatt tgttcaaaam gaatcaattt tcttcgtatg      3960
     attactggaa catggtgggg tgctcatccc wctgatatga ttacactcta taaaacaact      4020
     attcgwtcag ttatggaata cggttgtttt acatttggaa gtgctgttca aacacatttt      4080
     tcgaagcttg aaaaaatcca gtttcgttgt ttgagaattt gtttaaaatt aatgaattct      4140
     actcatacaa aatctgttga agttcttgct ggcattattc ctctaaggaa tcgcttacat      4200
     gagctcaatt gtaaattttt aataaattgt ttttcaaata atcatcctat tattgatctg      4260
     ttaaaatcam tatttgaaat taatccaact aataaaattt tgcattcatt tttatactgt      4320
     tccggagaaa ccattattcc aaattctaca cctggttttt atgaatatag catgaatgtt      4380
     catgccttcc gtccatgtat tgatttatct ttacttgaag aattaaaaca aattccttgt      4440
     catkctcatt tccgwtttgc taatatgtta tttaatcgaa aatttattgg agtggaacaa      4500
     aaccaaattt tttttacaga cggatcttta gtgggaaata tggcaggwtt tggagttttc      4560
     aacatcaact tggctcattt ttataaattg gaatctccgt gttctgtttt cacagctgaa      4620
     ttaactgctt tgtattttac ttgtaattta attaaaaatt ccgctcctaa catatacatg      4680
     gtgtgttctg atagcctgag ttgtcttaat gctttgaatt scagtaattt tcatttcaaa      4740
     actcatcgta ctgttttatc tattaaaaac ttattacaca atttgtattc tcgaggatat      4800
     gttattaaat tcgtttgggt accagctcat tgtaatattt atggtaatga gcaggctgat      4860
     ttattggcaa aattgggtgt tttccgtgga ataacttaca atcgtgatat ttgtgatttt      4920
     gaatatttta caaaattaaa aaaatattct ttgaataatt ggcaactttc atggaacaca      4980
     agtatccaag ggcgttattg ttattctatt ctcccgaagg ttaaggcagt tccttggttt      5040
     aaaaacttgt atgttgggcg taattttatc tgttccctct ctagattgat gtccaaccat      5100
     tatatttgta atagttattt gtaccgcatg aatatcatag attcagatat ttgtgaatgc      5160
     aatgaatctt atgaagacat tgatcatatt gttcttaaat gttctcgctt taatggacca      5220
     cgagaaaaat ttttggacaa cataatcagg ttaggttttg atattcctgt atctgttcgc      5280
     gatattctgg gaaataaata tctccctata ttaaaaatcc tatacaaata tctatatgac      5340
     atttcttatc atgtttgata tttgctgttt tgttttcttt tttcttttca ttttcagcta      5400
     ctacaagtcc aggattggca catgggacat gtcaatgatt ggctctgtga atcgtgtgga      5460
     tggcccttaa ctatgatgac ctcacttgac agatattggc tccgcaatgg atatgctccg      5520
     caagagcctt taattatatt tatttaattt ttttgtaacg tatttttgaa aagataaaga      5580
     ggttttatgc ctttttgaga aagatttcga aaggaaatca ctcaaagggg cttttccctc      5640
     tttcaaaatt tttaagttaa taaacaataa caataacaat aa                         5682
//
ID   I_Ele7      repbase;    DNA;    INV; 5314 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I-3_AAe;
KW   I_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5314
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5314
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 12
CC   sequences with >92% identity, and ~98% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           230..1594
FT                 /product="I_Ele7_1p"
FT                 /translation="MAASSGWDPGLPPTAVDGRPTVPEWMGGVGIGQLQIL
FT                 SLFAADGETKLCPFIVGKSMHDLAGDIESTTTEASGMKYVLRVRDAGQARK
FT                 LLNMKALFDGTAVKVEPHPILNKRRCVISCREIMNKTEEELQNWMAKDGVI
FT                 GVKRITRMENGKPVNTPTIILTINGTAVPDYIKVGPLRIKTRLYVPDPMIC
FT                 YRCFEYGHTKTRCKNAAKCRNCSQAHNMEEECKEAPFCFHCQGNHGPSNRS
FT                 CPVYATEKEIVRLRFTKGISQQEAIKQVKAGGGSYASVSQVQNRLTIAQGK
FT                 SESELLKTKDATIKQLTETIATLTKRIEELERRSKSKKEKKRSKRIQLTKD
FT                 DESCSEMETDSSAKQTTTEQPKGGTSTQVSAAFIKPSVQKHKRHPTTEIYA
FT                 PITKKPLADQIQLPNTQSNTNLNKSPANPPGILDLQNLMDSTRLDSPRSRP
FT                 NNGQHNKPSK"
FT   CDS           1569..5249
FT                 /product="I_Ele7_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANTTNRVNSQFSPKPQSQTCLALQWNLRGIKFRIPE
FT                 LQLLISKFDPICLSLQETMMPESKTPPNFIKGYTLYIRENPDNPSKTGTAI
FT                 AIKSDIPHRKIDVSSSVLAIGIEIDYPCKVTLLSLYIPGHLSNQTIKTDIS
FT                 KLLNQFSSPVLLMGDFNGHSTLWGCSNNNSRGVMLGQLFDEFGLTLLNDGT
FT                 HTRICPSTGNSSALDLSLCSHSLGSQLSWMVHDDCCCSDHLPIVISLNRAP
FT                 PVSTCRPRWKYEQADWVNYQNEVFHAFTVDPPNSADDFVKQLFQIASNHIP
FT                 RSSGAPGRKSVPWWNSDVHSAVKLRRKKLRALQRLPKEDRKNSEIFAEFKA
FT                 ARNAARATVKSAKQDSWDQFISSINPESSSKELWDKIHRLSGKKARQSIKL
FT                 RINNQITEDPSTITNHLADHFAQSSSSSNYSDRFISRKSSIESAPLNLESD
FT                 DSQEYNRNFSFDELQWALHKVHGSSAGPDDVGYPLIKNLPLIGKTILLTIF
FT                 NNIWNQGEIPDSWKEGLVVPIPKPGKDKNSADSFRPITLLNCIGKILEKMV
FT                 NRRLITLLESQGLIDDRQFAFRPDKSTDDYLTELEDIIDSHLERGMHGDIV
FT                 SLDLSKAYDRAWRFPILKSLEEWNIKGRMGRYVQNFLKDRRFRVILGNNRS
FT                 ELRCQENGIPQGSVIAPTLFLISIQSLFKTIPPNVFILVYADDITIITFHS
FT                 MKSLARKRIQSAVNTIAKWADENGFTVSPEKSQLLHISQNRKKMSKLPDIT
FT                 LNNSIIKSQISLKILGIHLDRSLSFIHHLNSVRKQICNRTNLIKVLGSRIP
FT                 CAHRKTINQIINSWLLPKMFYGVGLFSRGGDLVNKRLSPLYNKAFRYASGA
FT                 FCTSPTSAIMAETGQLPFEYHLTTCLVAKATRWLSLGGRYNVPLVKRTTEK
FT                 FQSLTNQVFPTIATLPRSKNRPWNQPLLKIDLSLLSQVKAGDPSSIIQPHF
FT                 HKLIADKYSTFQHLYTDGSVSNGKVGYGITGSPNVSNISSALPSIYSIFSA
FT                 EAYALMKAVHLISPQNLQSTVIFSDSASCLQEMNSYSLKHPWLQEAQGLAL
FT                 TNGATFCWVPGHSGIHGNEEADRLAGEGRGVNPEDVSVPSIDVLRWTKERI
FT                 LESWNTKWHHSRDISLRIIKPSIFPWPDNSNPKHRKIFTRLRIGHTRLTHE
FT                 YRLDKVDPPICTSCNSPLTVRHILIDCLTYNNERLAYNLGGTLDEVLSTTK
FT                 ETDLLGFLTATGLLDQL"
XX
SQ   Sequence 5314 BP; 1572 A; 1361 C; 1050 G; 1329 T; 2 other;
     cattcatcca tcattcagtt accaaccacc agtgcgcgcg gacgtacttt ttgcgagtgc        60
     gagttaattc cgagcgaaca gtagtgtatc tccaaccgat cccggtggag gaatagtgcg       120
     aaccactttc ggtggtgaaa acagtgaaga gtgaagtaca gtgaagtcgt gaagaactga       180
     tacgacaagt gaaaagtgcg aaaacagtga gaagtgaagt tgtgccatca tggcggcgag       240
     ttcagggtgg gaccctgggc tacctcccac ggcagttgac ggaagaccaa cggttccaga       300
     atggatgggc ggtgtcggga tcggccagtt gcagatcctg tcactgtttg ctgctgacgg       360
     ggaaacgaag ctctgcccat ttatcgtggg caaatccatg cacgatctgg ctggcgatat       420
     tgaaagcacg acgacggaag caagcggaat gaaatacgtg ttgcgagttc gagatgctgg       480
     acaagcgagg aagctcctca acatgaaggc cctgtttgac ggaacggcgg tgaaggtgga       540
     accccacccg atcctcaaca agcgacggtg cgtgatctcc tgccgcgaga tcatgaacaa       600
     aacggaagaa gagctgcaga actggatggc caaggatggt gtgattggtg tcaagcgaat       660
     cacccggatg gagaatggga agccagtgaa cacgcctacc attatcctca cgatcaacgg       720
     aactgcagta cccgactaca tcaaggtcgg tccgctgcga atcaaaaccc gactttacgt       780
     accggacccc atgatctgct atcgctgctt cgaatatgga cacaccaaaa cccgctgcaa       840
     gaatgccgca aaatgcagga actgctccca agcccacaac atggaggagg aatgcaagga       900
     agcacctttc tgcttccact gccaaggaaa ccacggacca tccaaccgct cctgcccggt       960
     ttacgccacg gagaaggaga ttgtccggct acgattcacc aaaggaatct cccaacaaga      1020
     agccatcaag caggtcaaag ctggcggtgg atcatacgcc tctgtcagcc aagttcaaaa      1080
     tcgccttacc attgcccaag gaaaatcgga atcggagctg ctgaagacca aggacgccac      1140
     catcaagcaa ctgacggaga ccatcgcaac gctcaccaaa cggattgaag aattggaaag      1200
     aaggagcaag agcaagaagg agaagaaacg aagcaagcga atccagctga cgaaggacga      1260
     tgaaagctgc tccgagatgg aaaccgactc cagcgcgaag cagacgacaa cggaacaacc      1320
     gaaaggtggc acctcgaccc aggtaagtgc tgcctttatt aagccaagcg ttcaaaaaca      1380
     taagcgacac ccaacaactg aaatctatgc cccaatcacc aagaaacctc tggctgacca      1440
     aattcaactc ccaaacaccc aatcaaacac caacctgaac aaatcccctg caaatccccc      1500
     tggtatcctc gatctacaaa atcttatgga ttccactcgc cttgactccc ctcgctcacg      1560
     tcccaacaat ggccaacaca acaaaccgag taaatagcca gttttccccc aaaccccaat      1620
     ctcaaacctg tttagcttta caatggaatc ttcgtggaat taaatttaga ataccagagt      1680
     tacaactact gatttctaaa tttgatccta tttgtttatc tcttcaagaa acaatgatgc      1740
     ctgaatcaaa aacaccaccc aattttatta aagggtacac actgtacatc cgtgaaaacc      1800
     ctgacaaccc ttctaaaact ggaacagcaa ttgccattaa aagtgatatt cctcaccgta      1860
     aaattgatgt ctcctcctca gtactcgcaa taggcatcga aatagattac ccctgtaaag      1920
     taacacttct ttcattatac atacctggcc acctctccaa tcaaacaatc aaaaccgata      1980
     tttccaaact tcttaatcaa ttttcatctc cagtcctttt gatgggtgat ttcaatggcc      2040
     attctactct atggggttgt tccaataaca actcccgtgg agtgatgtta gggcaactct      2100
     tcgacgaatt tggattaact cttttgaatg acggtaccca tactcgaatt tgtccttcta      2160
     caggaaattc atcagccctt gatctttcat tatgttcaca tagccttggt tcccagttat      2220
     cctggatggt ccatgatgat tgttgttgta gcgaccatct tccaattgtc atttctctga      2280
     atcgagctcc tcctgtttca acatgtcgtc ctagatggaa gtatgagcag gctgactggg      2340
     ttaattacca gaatgaggtc tttcatgctt tcaccgttga tcctcccaat tctgctgatg      2400
     atttcgtaaa acaactcttt caaattgctt caaatcacat tccccgatcc agtggtgctc      2460
     caggtaggaa atctgtcccc tggtggaatt ctgatgttca ttctgcagtc aagctccgcc      2520
     gtaaaaaact tcgtgctctt cagaggttgc caaaggagga tcgtaagaac tccgaaatat      2580
     tcgcagaatt caaagctgcc aggaacgctg caagagcaac agtcaagtcg gccaaacagg      2640
     atagttggga tcaattcatt tcttccataa acccagaaag ttcatcaaaa gaactgtggg      2700
     ataaaatcca tagactaagt ggcaaaaaag ccaggcagtc cattaaactt cgaattaata      2760
     accaaattac tgaggaccct tccactatca ctaatcacct tgcagatcat ttcgcccaat      2820
     catcctcttc ttccaattat tccgaccgtt ttatttcccg taaaagttcc attgaatccg      2880
     ctccccttaa tcttgaatca gacgattccc aggaatacaa ccgtaatttc tcctttgatg      2940
     aattacaatg ggctctccac aaagtccatg gctcttctgc tggtcctgat gatgtgggct      3000
     accctctcat caagaatctt ccccttattg gtaaaaccat cctgcttaca atcttcaaca      3060
     atatctggaa tcaaggtgaa atacctgatt catggaaaga aggtctagtt gttcccatac      3120
     ctaagcccgg taaagataaa aatagtgccg atagtttccg tcccataact cttttgaact      3180
     gcattgggaa gattcttgag aagatggtca atagaagact tatcactctc ttggaatccc      3240
     aaggtttaat cgatgatcga cagttcgctt tccgccccga taaatctact gacgactacc      3300
     taactgaact cgaggatatc attgactctc acctggagag gggaatgcat ggtgacattg      3360
     tatctcttga tctttcgaag gcctacgatc gtgcgtggcg atttcccatc ctcaaatcac      3420
     ttgaggaatg gaacatcaaa ggtcgcatgg gtcgttatgt acaaaacttc ctcaaagaca      3480
     ggagattcag ggtcatctta ggcaataacc gatctgagct gagatgtcag gaaaatggta      3540
     ttcctcaagg ttcggtgata gctcccactc ttttccttat ttctatacag tccctgttca      3600
     aaactattcc tcctaatgtt ttcatccttg tttatgcaga cgacataacc ataatcacwt      3660
     tccatagtat gaagtcactc gccaggaaaa gaattcaatc cgcagtaaat accatagcca      3720
     aatgggctga tgaaaatggt tttactgttt cccccgaaaa atctcagctc ctccacatta      3780
     gtcaaaatag aaaaaaaatg tccaaacttc ctgatataac cctcaacaat tctattatta      3840
     aatctcaaat atccctaaaa atccttggaa tacatcttga ccggtcccta agttttattc      3900
     accatcttaa ttccgttcgc aaacaaatct gcaatagaac caatctcatt aaagtcctag      3960
     gatctcgaat accctgtgcc cataggaaaa ctatcaacca aataatcaat agctggcttt      4020
     tacccaaaat gttctatggc gttggactgt tcagcagagg aggggatctc gtcaacaaaa      4080
     ggctaagtcc tctatacaac aaagcctttc ggtacgcatc gggcgctttc tgcactagtc      4140
     ccacctctgc tataatggcc gagacaggac aattaccttt tgagtatcat ctgacaacat      4200
     gcctagtggc caaagctacc aggtggctaa gtcttggcgg tcgatacaat gtccctttag      4260
     tcaaacgaac aaccgaaaag tttcaatctc ttactaatca agttttcccc accatagcta      4320
     ctcttcctcg atccaaaaat agaccctgga atcaaccact cctcaaaata gatctttctc      4380
     ttctcagcca agttaaagct ggtgatccct catcaataat tcaaccccat ttccacaaac      4440
     ttattgcaga caaatacagc actttccaac atttatacac cgatggctct gtatcaaatg      4500
     gtaaggtcgg gtatggcatc acaggtagcc caaatgtctc taatattagt tctgcgctcc      4560
     cttcaattta ctccatmttc agtgccgaag cttatgcttt aatgaaagct gtccatctca      4620
     tttcacctca gaatcttcaa agtacagtta tcttcagcga ctctgccagt tgtctccagg      4680
     aaatgaattc ttattccttg aaacatcctt ggcttcagga agcccaagga ctcgctctga      4740
     ccaatggggc caccttctgt tgggtgccag gccactctgg cattcatggt aacgaggagg      4800
     cggaccgatt ggctggagag ggtcgtggtg tgaacccaga ggatgtttcc gttccatcta      4860
     tcgacgtgtt gagatggaca aaggagagaa ttcttgaatc ctggaacaca aaatggcacc      4920
     acagtagaga catctcactt agaattatca aaccttcaat cttcccttgg cccgacaata      4980
     gtaaccccaa acaccggaaa attttcaccc gtcttcgaat tggccatacc cgtcttactc      5040
     atgaataccg cctcgataaa gttgaccctc caatctgcac ttcttgtaat tccccactaa      5100
     ctgttcgcca tattttaatt gattgcttaa cttacaataa tgaacgcttg gcttataact      5160
     tgggtggcac cctggatgag gtgctatcaa caacaaagga aacggatctt cttggattcc      5220
     tgactgcaac cggattactg gaccaactgt aaaacccagc gataagggac gaatgacctt      5280
     cgggttaaag tccctctcaa acaacaacaa caac                                  5314
//
ID   I_Ele8      repbase;    DNA;    INV; 6227 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele8.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6227
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6227
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 17
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           504..1835
FT                 /product="I_Ele8_1p"
FT                 /translation="MASTSGGGPIGPLNRNFPGLTETFGAVTTLLLMGKNG
FT                 SALPEDPFIVGESVEEWAGPVERSNIEGYGTKYVMRTRNQAQVEKLLQLNT
FT                 LKDGTEVSVILHPKFNTSRCVISTYSLISMEEKEILNKLASQGVTDVRRIM
FT                 KAKKEKTPAIILTFSRAEYPQSVKVGLLQVPTRPYYPNPLLCFKCYSYGHS
FT                 RNNCPNPQRCFNCSSQHEEMDTCDQPAFCINCEKNHRPFNRQCEVYRKEVD
FT                 IIRTKIDFNLSYPDARKRVEAGNGSYAKVTAQPRLDKTRFDAMAEQIKKQQ
FT                 DMIEKLEQQLQNQRSLEEKVTEMLERSKAKETKIEELLKYVQQRDEKIRKL
FT                 EAQNNNLKRLLDGMQAKQRSESLTSEPSLEMESIKRKSKRHTQPTDQQQVS
FT                 KGSAGMSPPPKRTSSRTRSPIMTRQTSNQEDTAKSNYIAESSFKSTPPNK"
FT   CDS           1838..6130
FT                 /product="I_Ele8_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MAQNQNQLVTQSTNSIHPKINNHRFEACERVVPPSLR
FT                 KEAQGEEETVRDVTPQPVDGKSSSAAGWHAPHSQHQSQTDQQNTNHPSTCS
FT                 LHTKNVLSHNSLNPTSEVSMSALSRAMHVSTSEKSNMPKEAPSDGTLNCLP
FT                 RAALTDAYQYDLFYNHMQRPGSSETPTITRCRTFPPTNAYNPSAEEQQKSG
FT                 SENLIINDREYGESYSNRRRSPTISTNDTFSGSATTRLALQWNINGLFNNL
FT                 GDLQLLIHDNAPQAIALQEIHCRNARNLDRLLEGKYRWYVKTGSTLFQNVA
FT                 LAIHQSVAHTFVPLNTALIAVAAKVHLPFRHTIVSIYLQNSGISNLEEQLA
FT                 SLFDQLEKPLLVLGDFNGHHYAWGSPKTDGRGVAILNTAEQHDLIVMNDGS
FT                 PTFLRTNCRSCIDVSLASSNILASLNWYIHSDPMGSDHFPIEIQHNAPPPE
FT                 TTRRPKWKLNEANWEGYEQTITSLIDPNREYQLEELSNIIIDAATKQIPKT
FT                 SSRPGRKASHWWCDEVKTAVKARRKALRAVKRIPRDHPNNDAIHAEYRRLR
FT                 NECRKTIREAKQRSWEKFLDGFDCEQSTSEMWRRVNALSGRRKLRGIAICQ
FT                 DDIISRDPTFVANNIGKYFAKISSLAEYDDSFLKFQEDKNCTLSKIIVPND
FT                 EENNDFNQPFTLEELLFSLDASNGKSAGPDGISYPLLKRLPLRGKIALLEM
FT                 FNAIWKAGSFPPDWRHSLVVPIPKKQATSTNPQDFRPIALTSCISKVLERM
FT                 VNRRLTTVLQEKQLLDFRQHGFLKGRGTGSYLASFGQVLHDALSNGLHVDI
FT                 AALDLSKAYNRVWRPSVLRQLINWGIVGNMGKFIKGFLDRRTFQVIIGNTL
FT                 SEEFIEESGVPQGSVLAVSLFLVAMNSVFNDLPDGIFIFVYADDIILVVVG
FT                 RSPKLIRRKLQSAVRKVSKWAISCGFKMAAEKCVISHVCNFKHHPWTNPVI
FT                 VDGCEVAFKKEAKILGVVVDRKCNFASHFSFVKKDSESRIRLIKAISGRHS
FT                 TNNRRSLMNIGRSIIISKLLYGLEITIRSATLMIQMFSPTYNKMIRLTSGL
FT                 LPSSPTLSTMVEAGILPFEYTLTAAASNRAISFIEKTYGAQRDIFILDETR
FT                 KLLQQYTNIDFPEIATLHRVGNRRWDRPNPKVDWSIKREIRAGESPEKIQA
FT                 IFNELIENKYATHCKIYTDGSRSNGKVGIGISSPIGNFARRLPDQFTVFSA
FT                 EAAAVYFAIKKCTSIPNASIIFSDSASTLAALENPQQKHPLIQAIENSILP
FT                 NTTLCWVPGHSGVRGNEEADKLASIGRTSTKWNLGIPRADMKLVIQNALQD
FT                 AWYRRWESNNGEFLRKIKNTVSEWSDRKNRKEQKILSRLRIGHTRVTHAHY
FT                 ISNSTKTTCETCSVPLTVEHILLNCQKYADIRNNLNLQDSIRTVLSNDVNE
FT                 EEKLLKFLKETKLXNEI"
XX
SQ   Sequence 6227 BP; 2008 A; 1475 C; 1312 G; 1430 T; 2 other;
     tcagtttcgt gtaatcggga tacggtagta taacaacatc gcgaaacgtc tagtcttcaa        60
     atgctatttt ctctttgaaa taagcgtttt aaaccccgtt ttttcaaccg acgtaaaagt       120
     taacgtgaga actcatcttc acgaagtgcg gtacagacaa attgttatgc gtaggcgtta       180
     aaagtgtacg atccaatgtt aagttaacac cgggcaacag cggcatcatc gagaacaata       240
     agcacataca gcagtgcgta acgagtagtg ttgtgtgggt caagcaaata acccgagtga       300
     tagtttgtga caatacgtgg cgaaaaagtg catgctgaga cgaattcgcg tgaaaaccgt       360
     tttsttgggt ttcttattcc tcctcaatcc tcatcctcgc agcaggggtg ggtagcgggt       420
     gaccgctacc aattttttct gcgttaattg atttgtattt cttcgatctg aaaaaagtgc       480
     gtgtgattgg ctgtggttgc taaatggcct ccaccagtgg aggcggcccc atcgggcctt       540
     taaatcgaaa cttccctggg ctaacggaaa cgtttggagc tgtaacaacg ctgcttctga       600
     tgggcaagaa tggatcagca cttccagagg accccttcat agttggagaa agtgtcgagg       660
     aatgggctgg ccccgttgag cgcagtaata ttgaaggata tggcacgaag tacgttatgc       720
     ggactaggaa tcaagcccaa gtcgaaaaac tgttgcaatt gaacactctc aaggatggaa       780
     cggaagtaag cgtaatacta caccccaagt tcaacacaag tcggtgcgtt atttccactt       840
     actcgctaat cagcatggag gaaaaggaaa ttctcaacaa gcttgccagt caaggtgtca       900
     ccgatgtcag aaggatcatg aaggcaaaaa aggaaaaaac gccggcgatt attctcactt       960
     tcagccgtgc ggaataccca cagtcggtca aagttggatt actacaggtc cctacccgac      1020
     cctactatcc taatccatta ctctgcttca aatgctactc ctacggccac tcaagaaaca      1080
     actgccctaa tccccaaagg tgtttcaact gttcgtcaca acatgaggag atggatacat      1140
     gcgatcaacc tgccttctgc atcaactgtg agaaaaacca tcgacccttt aaccgtcaat      1200
     gcgaagtata ccggaaggaa gtggatatta tccgaaccaa aattgatttc aacctctcat      1260
     acccggatgc acgaaaacga gtcgaagcag gaaacggaag ctatgccaaa gtgacggcgc      1320
     agcctcgttt ggacaaaacc cgctttgatg ctatggctga acaaattaag aagcagcaag      1380
     acatgatcga aaagttggaa cagcagctac agaatcagcg aagtttggaa gaaaaggtga      1440
     cagaaatgct tgaacgtagc aaagcaaaag agacaaaaat cgaggaactc ctgaaatatg      1500
     tacagcagcg tgatgagaaa atcaggaaat tggaagcgca aaacaacaac ttaaagcgtc      1560
     tcctggatgg aatgcaagca aaacagcgga gtgaatcgct aaccagcgag cccagcttag      1620
     aaatggaaag cataaagcga aaatcgaaac gccacactca gccaacagac caacaacaag      1680
     tatccaaggg atcggccggc atgtcaccac cgccgaaaag gacctcctct agaaccagaa      1740
     gccctatcat gaccaggcaa acgagcaatc aagaggatac cgctaaatcg aactacatcg      1800
     cagaatccag cttcaagtca acaccaccta acaaataatg gcccagaacc agaatcaatt      1860
     agttacgcaa tcaaccaaca gcatccatcc caaaatcaac aaccaccggt ttgaagcgtg      1920
     cgaacgtgta gtaccacctt cacttcgtaa agaagcgcag ggggaagagg agactgtccg      1980
     ggacgttaca ccccaacccg tcgatggtaa atcttcctct gcggccggtt ggcacgcacc      2040
     gcactctcaa catcaatctc aaacagatca gcagaataca aatcatccct ccacttgttc      2100
     cttacatacc aaaaatgtcc tttcacataa ttcccttaac ccaacctctg aggtttcaat      2160
     gagcgcactt tccagagcca tgcacgtctc aacgtcagaa aaatcaaata tgcccaaaga      2220
     agccccatct gacggtacct tgaactgtct gccacgagcc gctctgaccg acgcctatca      2280
     gtatgatctt ttctacaacc atatgcaacg accaggatct tctgagacgc ccaccataac      2340
     acgatgtcga accttcccac caacaaacgc ctataaccct agtgctgaag aacaacagaa      2400
     atcaggttcc gaaaatctca tcataaatga tcgcgaatac ggagaatcat actcgaatcg      2460
     tcgaaggtct ccaacaatct ccacgaatga caccttttct ggtagcgcaa caactagact      2520
     cgcactccag tggaatataa acggcctgtt caacaaccta ggcgatcttc aactgttaat      2580
     acatgacaac gcaccacagg caatagcact tcaagaaatt cattgccgga atgctcggaa      2640
     cttagatcgc ttactggaag gaaagtatcg gtggtatgtc aaaacaggat ccacactttt      2700
     ccaaaatgtt gccttagcta tacaccagtc cgtggcgcac actttcgttc cactcaatac      2760
     ggctctcata gccgtagctg caaaagttca cctgcctttt cgtcacacaa tcgtgtccat      2820
     ctaccttcaa aattccggaa tttcaaatct agaggaacaa ctagcgagtc ttttcgatca      2880
     actggagaaa cccttgctcg ttcttgggga ttttaacggg catcactacg catggggctc      2940
     accgaagact gatggaaggg gtgtcgccat actgaacacg gctgagcaac atgatcttat      3000
     cgtgatgaat gatggttcgc ccacattcct ccgcaccaac tgcagatcgt gcatagatgt      3060
     atctctcgca agcagtaata tccttgcctc tctaaattgg tacattcact cggatccaat      3120
     gggaagtgat cacttcccaa ttgaaattca gcacaatgcc cccccaccgg agacaacccg      3180
     tcgtccaaaa tggaaactca acgaagcaaa ctgggaagga tatgaacaaa ccatcacatc      3240
     tctaatagat cccaaccgcg aatatcagct tgaagaacta tccaacatca taattgatgc      3300
     tgcaacgaag caaatcccga agacgagcag tagacccgga agaaaagctt cacactggtg      3360
     gtgcgatgaa gtgaaaactg cagtgaaagc ccgtaggaaa gctttgaggg cggtgaaacg      3420
     tattcccagg gaccacccca ataatgatgc aattcatgcc gagtacagac gacttcgaaa      3480
     cgagtgtaga aagacaatca gagaagcaaa acagaggtct tgggagaaat tccttgatgg      3540
     tttcgattgt gagcaatcaa cgagtgaaat gtggaggcga gtcaatgcac tatctggtcg      3600
     aaggaaattg agagggattg ctatttgcca agatgatatc atatctcgtg acccaacgtt      3660
     cgttgctaat aacattggaa aatacttcgc taagatttca tcacttgctg agtatgacga      3720
     cagtttccta aaattccaag aagataagaa ctgcacgcta tcgaaaatta tcgttccgaa      3780
     cgatgaggaa aataacgact tcaaccagcc tttcaccctg gaagaacttc tcttctcttt      3840
     ggatgccagc aacggaaaat cggctgggcc agacgggata agttatccgt tactaaaacg      3900
     tctgccatta cgaggtaaga ttgcgttatt agaaatgttt aatgctatct ggaaagccgg      3960
     aagttttccc ccggactggc gtcacagtct cgttgtcccg atcccaaaaa aacaggcaac      4020
     gtcaactaac ccccaagact ttagaccgat tgcactaact agctgcatct caaaagtttt      4080
     ggaacgcatg gttaatcgcc gactaacaac agttctccaa gaaaaacaac tcctagactt      4140
     tcgacagcac ggattcctca aaggacgtgg cacgggatcg tacttggcat cgttcggaca      4200
     ggtattacat gacgctctct ccaacggact acatgttgat atagctgcat tagacctctc      4260
     taaggcctac aatagggtct ggcgaccctc agtattgcgc cagctcatca actggggcat      4320
     cgtaggaaac atggggaaat tcattaaagg cttcctggat agacgaactt ttcaagtgat      4380
     catcgggaac actttgtcag aagaattcat cgaggaatca ggtgtaccgc aaggatccgt      4440
     actagccgtc tctctctttt tggtggctat gaactccgtc ttcaacgatc tccccgatgg      4500
     tatatttatc ttcgtgtacg ccgatgacat aattcttgtc gttgttggta gaagtcccaa      4560
     actcatacgg cgtaagctcc aatcagcggt gcgtaaagtc tcgaagtggg caatttcctg      4620
     tggcttcaag atggctgcgg aaaaatgtgt aatttcacat gtttgtaact ttaaacatca      4680
     cccttggaca aacccagtaa ttgtcgatgg atgtgaggtt gcgttcaaaa aagaagcaaa      4740
     aatcctagga gttgtcgtcg acagaaaatg caactttgct tcgcattttt ccttcgtgaa      4800
     aaaagacagc gaaagcagaa tacgcctaat taaagctata agcggaaggc actcaactaa      4860
     caaccggagg tcgctaatga atattggtcg gagcataata atcagcaagt tactgtacgg      4920
     cctagaaatt acaatccgtt cagcaacgct tatgatccaa atgtttagcc ctacttacaa      4980
     caaaatgata cgtctcactt ctggtctact tccaagctct ccgactttgt ccacaatggt      5040
     tgaagctgga atactccctt ttgagtacac cctaactgcg gcagcaagca acagagcgat      5100
     aagctttatc gaaaaaacat acggcgcaca aagagacatt tttatcctcg atgagacaag      5160
     aaagttgttg caacaatata ctaatattga ctttcccgaa atagccacac tccaccgagt      5220
     cggaaatcga cgatgggatc gtcctaatcc caaagttgat tggtcaatca aacgagaaat      5280
     acgggcaggc gaatcaccgg aaaaaattca ggcgattttc aacgaactca ttgagaataa      5340
     atacgctaca cactgcaaaa tctacacaga tggttcacgc tcaaatggaa aggttggcat      5400
     tggtatatct tcgccaatag gaaatttcgc acgcagatta cccgaccaat ttaccgtctt      5460
     ttcggcagaa gctgcggcag tttactttgc aatcaagaag tgtacaagca tccccaacgc      5520
     atcgatcatc ttttctgatt ccgctagtac attggctgca ttagaaaatc cgcaacaaaa      5580
     gcatccccta atccaggcta tcgaaaactc tattctaccc aacacgactc tttgctgggt      5640
     cccaggacac agtggcgtta gaggaaacga ggaagcagac aagctcgcta gcatcgggcg      5700
     tacatcaacc aaatggaatc tcggaatacc tagggcagat atgaaattag taattcagaa      5760
     tgcactacag gatgcatggt atcgaagatg ggaatccaac aatggtgaat ttctgagaaa      5820
     aatcaaaaat actgtgtcag aatggtcaga cagaaaaaat cgaaaagaac agaagatctt      5880
     atctcgttta agaatagggc acacaagagt tacacatgca cactatatct ccaattcaac      5940
     taaaacaact tgtgaaacct gctcagtccc tctgactgtt gaacacattt tactgaactg      6000
     tcaaaaatat gctgatatac gtaacaattt gaacctacaa gatagtataa gaaccgtgtt      6060
     aagcaatgat gtaaatgaag aggagaaatt gttgaagttt ttgaaagaaa ccaaattgtw      6120
     caacgagata taaaaattag ccttaaacgt ttgaagaggc gaaccagctg cgaaagctga      6180
     aaacctctat aataaagata aaaaaaaaaa aaaaaaaaaa aaaaaaa                    6227
//
ID   I_Ele9      repbase;    DNA;    INV; 6126 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An I clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; I_Ele9.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6126
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6126
RA   Kojima K.K. and Jurka J.;
RT   "I clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           73..1413
FT                 /product="I_Ele9_1p"
FT                 /translation="MTAASSGDPGGSKESWPCIGNPSNVEFGSLTYLLLRS
FT                 KDDKVPLTSNPFIVGQSVELAAGGPIEGASTEAQCTRYTLKVRNQTQVKKL
FT                 LRMSTLLDGVEVIIEPHPILNVSRCVISCFETVHMTEDAMLDGLNSQGVIR
FT                 VQRITRKEHGKPVNTSALILTFGRCDYPSHVKIGLLRVATRPYYPNPLLCY
FT                 GCVRFGHPRVRCPGPKRCVNCSAEHELLEGEVCSFAAHCINCNGPHRPTSR
FT                 QCPVFKKEMEVVRLKVDQNLSFPEARRRIEQDLGSYAAAAAQQTADRKRLD
FT                 ELEKKMEQKEALISQLLVKIQDKDERIEQLLLQINRMKTVENQDSQQNTPT
FT                 QPLKSCQANKPSEPVKPIEAIQKAREQLTTATRMQLRNRSPATTQTAGTET
FT                 RNRKKKHNRSTNGSPGRQSPPPKKTPAEEDPNQEELSDNGIEIEETPPSQS
FT                 FR"
FT   CDS           1728..5774
FT                 /product="I_Ele9_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MSVDLPSPTACPLPHAITISRSLLRGSVCSEVGNLRH
FT                 TNVEPSQSYRLSAGETHRHRSNSPQPPHQKQQTRKISSERGSRRGEGEREV
FT                 TSPLPRRGVDLRGVECGTSNECLARSVSSWHPVDSQTRPLSSSASSSSSST
FT                 KSNSQADKCYALQWNIRGLRANINELKQLIHEYEPLVIALQETKANSRSVP
FT                 SHFVGSNYTLILQTGNCQYWQQGVGLAIREGVPFERIQLDCNLQAIAVRIH
FT                 LPATVTVVSIYVPPSTQQCQAEMNKLFEQLQGPALILGDFNAHHMAWGSQT
FT                 ENSLGRFIAEKSLTKQMIILNDGTHTRIDPATGHTSAIDLTICSEALAAKY
FT                 VWRTLTDTYNSDHFPITVSIRGWSHSLTKKRRWLYDQADWATFEQTIANSI
FT                 KVGEDIGVDEFANRLLSAAVASIPRTSGRVGPKSAPWWNSQVEEAVKKRRK
FT                 ALRTLKRKKKTNSDITEALKNFQQTRTAAKKVVQNAKTQSWENFVAKISPN
FT                 STAKDMWQTVNKLRGKQQNNTAIIKRSSGFTDNVEEVAEELAQHYSKISAS
FT                 TSYPPLFQRAKEKAEQNRMNVLPNTEDIYNCDFTLNELLWALDKGRSTSTG
FT                 PDSIGYPMLQRIPLSVKSALLDLFNRIWHSGVFPASWRTGIIVPIPKPNSN
FT                 DSGPAAFRPITLINCMAKVFERIVNRRLMTELESKGRLDKRQHAFRAGYGT
FT                 DTYLAELERSLPENNEHCLVASLDLSKAYDTTWRYGILRTLRKWRIGGRMF
FT                 NILNSFLTDRTFQVQVQGHLSRIMPLENGVPQGSVLSVTLFLVAVQPVFRV
FT                 IPNAVEILLYADDIILIVRRRKEETLYRTLQAAVKAVSKWAKSVGFRISPS
FT                 KSKIFYGSPNVRRAPRNNICIDQVPIPKTNKLKIIGITIDRKLTFQQHCKT
FT                 IKSSCESRLRILKIIGNRLPRGHRTSLLRIGSAIITSRLLYGIGVTSRAEN
FT                 AVIKILSPIYNQMVRYASGAFVTSPVLSVMSEAGTLPFHLLVLQSVTQVAI
FT                 RILEKNEAAGDLPIIQRVFSRLEEVXNISPPNISIRTRLTDRIWHKPKPQV
FT                 VWTVKQQVKAGDPPEMVRPIVHELLSGRFNRYTVVYTDGSKSNGTVGAGVF
FT                 GENISRSVGLPPQCSVFSAEAFAIKLALNLVENSKELLILSDSASCLAAIE
FT                 SGKSQHPWIQGIEDALHNRVVYLCWIPGHAGVAGNEEADRLADEGRHRTPM
FT                 NVALPGKDTKKAMKQAIRQSWESQWSLLRDVKLREVKFTTEKWPDHANPID
FT                 QRVLTRLRIGHTRITHEFLLKRTCPPVCDCCGTTLDVRHLILECRKYDEAR
FT                 RQHGIDPTSLRVALSCDSENEEKLLKFLRDTNIYKYV"
XX
SQ   Sequence 6126 BP; 1931 A; 1485 C; 1349 G; 1356 T; 5 other;
     ttaacttttt atcaaattcc aacgttcgtc gtgtacaaca ataaagaagt ggcagtgtag        60
     ggtggtgtaa acatgacggc cgcaagcagc ggcgaccctg gtgggtccaa ggagtcatgg       120
     ccatgtatag gaaatccgtc gaatgtcgaa tttggttcac taacgtatct tctattacga       180
     agcaaggatg acaaggttcc actgacgtcg aatcctttca ttgttggaca atcggtagaa       240
     ttggctgccg gtggaccaat tgaaggagca tcaacggaag cgcaatgcac aaggtacact       300
     ctcaaggtca gaaatcaaac tcaagtcaaa aagctgttga gaatgtctac gcttttggat       360
     ggcgtcgaag ttatcatcga accgcacccg atcctaaatg tgagccgctg cgtcatctcg       420
     tgcttcgaaa cggtccacat gacagaggat gccatgctgg acggtctgaa tagtcagggc       480
     gttattcgag tccaacggat cacgcgtaag gagcatggaa agccggttaa tacttctgcc       540
     cttattctta ccttcggtag atgcgactat ccatcccatg taaaaattgg ccttcttcgt       600
     gttgctacac gcccgtatta tccaaaccca cttttgtgct acggatgtgt ccgtttcggc       660
     catccgcgtg ttcgctgtcc tggaccaaaa cgttgtgtta actgctctgc cgaacatgaa       720
     ctgttggaag gcgaagtgtg ttcattcgct gcccactgta ttaactgcaa tggacctcat       780
     cgaccaacca gccgtcaatg cccagtgttc aaaaaggaga tggaagtggt tcgactaaaa       840
     gttgaccaaa acctatcttt tcccgaagca cgtagacgga tcgagcaaga tctaggaagc       900
     tatgctgccg ccgcagctca acagacagcc gatcgcaaaa ggttagacga attggaaaag       960
     aaaatggaac agaaggaagc tcttatctcg cagctacttg taaaaatcca agataaagat      1020
     gaaagaattg aacagctcct gttgcaaatc aacagaatga aaactgtgga aaaccaggat      1080
     tcccaacaga acacaccaac ccagccccta aaatcttgcc aagcaaacaa gccatcggaa      1140
     ccagtcaaac caattgaagc catccaaaaa gccagggaac agctcacaac cgcaactcga      1200
     atgcagctca ggaacagatc acccgcgaca acacaaaccg ctggaactga aactcgaaat      1260
     aggaagaaaa agcacaacag aagtacgaac ggctcacccg gtcgacaaag ccctccccct      1320
     aaaaagacac ccgctgaaga agatcctaat caggaagaat taagtgataa cggcattgaa      1380
     atcgaagaaa cgcctcctag tcagtctttt cgataagatg cccctctcca cacgcccacc      1440
     gatcaacgac accaacctag caacgaaacg aacagcgaaa acaatcgatt tgaagggagg      1500
     gaatgtgtag tacccccttc actctcacaa gcgagagcgc agcaggctgg aggatccatc      1560
     cgggacgtcc taccccaacc cgttgatgga gaatccccct ctgcggtcga tcccgaagaa      1620
     gtatagtgta cacccctaat ccacccagca taccacttcg aattcctata catagccaca      1680
     acgtatccaa cttgtcctcc atcaatgtag ctataaacca tccagaaatg tcagtagacc      1740
     tcccgtcacc aacagcatgc cctctgcctc acgcaatcac cataagcaga tctctactca      1800
     gaggatctgt ctgtagtgaa gtgggcaatc tccgtcacac caatgtagag ccttcgcaat      1860
     cctaccggct ttccgctggt gaaacccatc gtcatcgatc aaactctcct caaccacctc      1920
     atcaaaaaca gcaaacccgc aaaatcagtt cggagcgcgg cagtcgacga ggggagggag      1980
     agcgtgaagt aacctccccc ctccccagga ggggagtgga tctccggggg gtagaatgtg      2040
     ggaccagtaa cgagtgtctt gcacgttcag tttcctcctg gcatccggtc gattcgcaaa      2100
     cacgcccgtt gtcgtcatca gcatcgtcgt cgtcttcttc gactaaaagc aacagtcaag      2160
     ctgacaagtg ctatgcactg cagtggaaca tcagaggctt gcgtgccaac ataaacgagt      2220
     tgaaacaatt gatccacgaa tatgaaccgc tcgtgatcgc tctccaagag actaaagcga      2280
     acagtcggtc agtcccttcc cactttgtcg gaagcaacta tacccttatc ctacagacgg      2340
     gtaactgcca atactggcaa cagggagtag gcctcgctat cagagaggga gttccgtttg      2400
     aacgcatcca gttagattgc aaccttcaag ctatcgcggt ccgcatccac cttccggcaa      2460
     ccgtaactgt ggtgtctatc tatgtgcctc caagtactca acaatgccaa gcagaaatga      2520
     acaaactttt cgagcagttg cagggaccag ctttaatact gggtgatttc aatgctcatc      2580
     acatggcttg gggctcccaa acagaaaatt cattaggtcg ttttatagct gagaagtcac      2640
     ttacaaaaca aatgataatc cttaatgatg gaacgcatac ccgaatcgac ccagctactg      2700
     gtcacacctc agctatagac ttaacgattt gctcggaagc actggccgcc aaatatgttt      2760
     ggcgtactct cacagatacg tacaacagtg accatttccc tattactgtt tcaatccgtg      2820
     gttggtcaca ttccttgacc aaaaaaaggc gatggcttta tgatcaagct gactgggcaa      2880
     cgttcgaaca aacaatcgct aatagcataa aagttggtga ggatatcgga gtagacgagt      2940
     tcgctaaccg actactatcg gcagctgtag caagtattcc ccgaacatcc ggcagagtcg      3000
     gaccgaaatc agccccatgg tggaattcmc aagtagaaga agccgttaaa aagaggagaa      3060
     aggcactgag aacgttaaaa cgcaaaaaga agacaaattc ggatataacg gaggccctta      3120
     aaaatttcca acagacaaga acggcagcaa aaaaagtagt ccaaaacgca aaaacacaat      3180
     cgtgggaaaa ttttgtggct aaaatwtccc caaattctac ggctaaggac atgtggcaga      3240
     cagttaacaa gcttagagga aagcagcaaa ataataccgc cattattaaa agatccagcg      3300
     gattcacgga caacgtggaa gaagtggcag aagagctagc acagcactac agcaagatct      3360
     ctgcgagtac cagctatccc ccattgtttc aaagggcaaa ggaaaaagct gaacaaaatc      3420
     gcatgaatgt cttgccgaac accgaagata tctacaactg cgacttcacc ttgaatgagc      3480
     tcttgtgggc actcgacaaa ggtcgtagta catctacagg accggattct ataggatatc      3540
     cgatgctcca acgaatcccg ctatctgtaa aatcagcact gttggatctc ttcaaccgaa      3600
     tttggcatag cggcgttttc cctgctagtt ggcgaactgg gataattgtg ccgatcccaa      3660
     aaccaaactc caacgattct ggaccggctg cgtttcgtcc cataacttta atcaactgta      3720
     tggcaaaggt ctttgagcgt attgtgaata ggcggctgat gactgagctt gaatcgaagg      3780
     gccgacttga caagcgacag cacgccttca gagctggtta cggtacggat acctaccttg      3840
     ctgaacttga aagatcacta cccgaaaaca acgaacattg cctggttgcg tcgcttgatc      3900
     tttccaaggc atacgacact acgtggcgat atggcatcct ccgtacactt cggaaatggc      3960
     gtattggtgg tcgtatgttc aacattctga acagctttct tactgataga acgttccaag      4020
     ttcaagtgca aggacattta tcacgcataa tgccacttga aaacggcgtt ccacaaggct      4080
     cagtgctttc agtcactttg tttttagtgg ccgttcaacc ggtgtttcgt gtgattccaa      4140
     atgcagtcga aattctcttg tatgctgatg acataatact tatcgttcga aggagaaagg      4200
     aagaaacgct ctaccgaaca ctacaggctg cagtgaaggc ggttagcaaa tgggctaaga      4260
     gtgtcggttt tagaatttca ccttcaaagt caaaaatatt ctacggaagt cccaatgttc      4320
     gcagagcacc tcgtaacaat atttgcattg accaagtacc tattccaaag acaaacaagc      4380
     ttaagataat tggaatcacc atcgatcgaa aactcacttt ccagcaacat tgcaaaacga      4440
     taaaatcttc ctgcgaatcc agactacgga ttttaaaaat tatcgggaac cgacttcctc      4500
     gtggacatcg cacctcccta cttcgtatag gatcggcaat aataacctcg cgtctcttat      4560
     atggcatcgg agttaccagc agagcggaga acgcagttat aaaaatcctc tcacccatct      4620
     acaaccagat ggttcgatac gcgtctggcg cctttgtcac cagtccggtt ctwtcagtta      4680
     tgtctgaagc aggcacactg cccttccatc tccttgtact gcaatccgta acccaagtgg      4740
     ctatccgcat attagagaaa aacgaagctg ctggagattt accaataata caaagagtat      4800
     tcagtcgtct ggaggaagta atkaatatat cacccccaaa catcagcatt cgaactcgtc      4860
     taactgatag aatctggcat aagccwaaac cacaagttgt gtggactgtt aaacaacagg      4920
     ttaaagctgg cgaccctccg gaaatggtac gccccatcgt tcatgaactc ctatcaggtc      4980
     gattcaacag atatactgtt gtctatacag acggatcaaa aagcaacggt actgtcggag      5040
     caggagtgtt tggcgaaaat atttccaggt ctgttggcct tcctccacaa tgcagtgtct      5100
     tttcagcaga agcgttcgca ataaaattgg cactgaacct cgtcgaaaac tcaaaagagc      5160
     ttcttattct gtcagactca gctagctgtt tagcagccat agaatctggc aaatctcaac      5220
     atccgtggat ccaaggaatc gaggatgcac tgcacaaccg tgtggtatat ctgtgctgga      5280
     taccagggca tgctggtgtc gctggaaatg aggaagcaga tcgccttgcc gatgaaggta      5340
     ggcatagaac tccgatgaat gttgcacttc caggaaaaga caccaaaaag gcaatgaagc      5400
     aagcaatcag acaatcatgg gaaagtcaat ggtcactgct tcgagacgta aaactcaggg      5460
     aagttaagtt tactacggag aagtggcccg atcatgcaaa ccccattgat cagcgcgtgc      5520
     tcacccgatt acgcattggg cacacaagga taacccacga atttctactc aaacgaacat      5580
     gtcctccagt ctgcgattgc tgtgggacta cgctagatgt ccggcacctt atactagaat      5640
     gcagaaaata cgacgaagct agaaggcaac acggtataga tccaaccagc cttcgagttg      5700
     cgcttagctg tgacagtgaa aatgaagaaa aattattgaa gtttttgcgt gacaccaaca      5760
     tatacaaata tgtgtaatcg agcaaagaaa tagtgaaaaa aagaaaccaa tagaaaacag      5820
     tgagtgaaga acaacaaaac attaattatg tgaagcaagg ggaaccatca agaaagtgaa      5880
     gaagaactaa gcaacagaca aaaagagaag aaataaagaa caggtggaaa caaaaagaag      5940
     atatcagtga acagaaatac aacaaagcga gtcatgcgaa ggaaggagaa acaacacagt      6000
     atcgaagttg gcagaaacga cagatagaca acagaacaag aaagctaagt tatattttat      6060
     gatattttct ttagaggtga atgatcacga gatgattaaa acctctctaa taaaataaaa      6120
     aaaaaa                                                                 6126
//
ID   JAM1        repbase;    DNA;    INV; 3464 BP.
XX
AC   .
XX
DT   04-OCT-2010 (Rel. 15.10, Created)
DT   04-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   JAM1 RTE non-LTR retrotransposon family: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; JAM1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3464
RA   Warren M.A., Hughes A.M. and Crampton M.J.;
RT   "Zebedee: a novel copia-Ty1 family of transposable elements in
RT   the genome of the medically important mosquito Aedes aegypti.";
RL   Mol. Gen. Genet 254(5), 505-513 (1997).
XX
RN   [2]
RP   1-3464
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (04-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >99% identity. Probably active.
XX
FH   Key           Location/Qualifiers
FT   CDS           717..3425
FT                 /product="JAM1_1p"
FT                 /translation="MGDMQRRVIGWWPINERMCKLRIKGRFFNFSIINVHS
FT                 PHSGSTDDDKDAFYAQLEREYDRCPSHDVKIIIGDLNAQVGQEEEFRPTIG
FT                 KFSAHRLTNENGLRLIDFAASKNMAIRSTYFQHSLPYRYTWRSPQQTESQI
FT                 DHVLIDGRHFSDITDVRTYRGANIDSDHYLVMVKLRPKLSVINNVRYRRPP
FT                 RYNLERLKQPDVANAYAQHLEAALPDEGELDRAPLEDCWRTVKAAINDAAE
FT                 SVVGYVERSSRNDWFDEECQEVLEEKNAARAAMLQHGTRQNVERYRLKRKQ
FT                 QTRLFRDKKRRLEEVECQEMELLYRSQETRKFYQKLNTSRKGFVPRAEMCR
FT                 DKDGSILTDGREVIERWKQHYDEHLNGAENTGTEGQDSEGDGYVSTADSGN
FT                 QPAPTMGEVKDAIQQLKNNKAAGKDGIGAELIKMGPDRLAACLHRLIVRIW
FT                 ETEQLPEEWKQGVICPIYKKGDKLECENYRAITILNAAYKVLSQILFRRLS
FT                 PIANEFVGSYQAGFIDGRSTTDQIFSVRQILQKCREYQVPTHHLFIDFKAA
FT                 YDSIDRIELWKIMDENSFPGKLTRLIRATMDGVQNCVKISGEHSSSFESRR
FT                 GLRQGDGLSCLLFNIALEGVMRRAGLNSRGTIFTRSGQFVCFADDMDIIGR
FT                 KFETVADLFTRLKREATRVGLMVNASKTKYMLVGGTERDRTRLGSSVTIDG
FT                 DTFEVVDEFVYLGSLLTADNNVSREIRRRIISGSRAYYGLQKKLRSRKIHP
FT                 RTKCTMYKTLIRPVVLYGHEAWTMLEEDLQALGVFERRVLRTIFGGVQENG
FT                 VWRRRMNHELAQLYGEPSIVKVAKAGRIRWAGHVARMPDNNPVKMVFATNP
FT                 VGTRRRGAQRARWIDQVHQDLESVGHSRGWREAAMNRGNWRNIVGEALSR"
XX
SQ   Sequence 3464 BP; 941 A; 846 C; 1010 G; 667 T; 0 other;
     ttggcgcggt aaatggctgg gcatggcgta ccattggtac ctcgcgtacc tgcaggaata        60
     aaatagaccc ctttgtgcgg tccttagcct cttgcccagc aactcctatc cctacctcct       120
     cgtggtactg gccggggtac gagtaacctt ggggaagatc gggtaaccaa cccccggtgg       180
     gaactttggt cgtatgctga cagggaaggg ggggtttgct tttgcaaacc tggagcgtct       240
     gtactccacg ttaggagcgg ctcacaacag cgtctgttcc ccatgtcagg ggcggctgat       300
     catcgtccga gtgccagaga aggactctaa gctaaactgc gcactatggc cctccgaaca       360
     tttaggggga atggtcctcc ggaaatctag ggggttggtg tcaggccctg cgagccagcc       420
     gtaaaaacac atcagcacag gaacgtcaac gagagaatac ggaccggaac aatcggcaaa       480
     gaccacagcg acgaaaatgg actagcgatt ggaaactcgg tacgtggaac tgcaaatctc       540
     tcaacttcat tggaagtact cgcatactct ccgatgtact gaagacccgc ggtttcgaca       600
     tcgtagcgct gcaggaggtg tgctggacag gagcattggt gcgaacgttt agaggtaatc       660
     ataccatcta ccagagctgc ggcaacacac gcgagctggg aacagctttt atagtgatgg       720
     gtgatatgca aaggcgcgtg atcgggtggt ggccgatcaa tgaacgaatg tgcaagttaa       780
     gaatcaaagg ccgattcttt aacttcagca taatcaacgt gcatagccca cactccggaa       840
     gcactgatga tgacaaggac gcattttacg cgcagctcga acgcgagtac gaccgctgcc       900
     caagccacga cgtcaagatc atcataggag atttgaacgc tcaggttggc caggaggagg       960
     agttcagacc gacgattgga aagttcagcg cccaccggct gacgaacgag aacggcctac      1020
     gactgataga ttttgccgcc tccaagaaca tggccattcg tagcacctat ttccagcaca      1080
     gcctcccgta tcggtacacc tggagatcac ctcagcagac agaatcgcaa atcgaccacg      1140
     ttttgatcga tggacggcac ttctccgaca taaccgacgt cagaacctat cgtggcgcca      1200
     acattgactc cgaccactac ctggtgatgg tgaaactgcg cccaaaacta tccgtcatca      1260
     acaatgtacg gtaccgacgc ccgccccggt acaatctcga gcggctgaaa caaccggatg      1320
     tcgccaatgc gtacgcgcag catcttgagg cagcgttgcc ggatgagggc gagctcgata      1380
     gggcccctct tgaggactgc tggaggacag tcaaagcagc cattaacgac gctgccgaaa      1440
     gcgttgtcgg atatgtggaa cggagctcaa gaaacgattg gttcgacgag gagtgccaag      1500
     aggttttaga ggagaagaat gcagcgcggg ctgcaatgct gcagcatggt acgcggcaaa      1560
     acgtggaacg atacagactg aagcggaaac agcaaacccg cctattccgg gacaaaaagc      1620
     gccgcctgga agaggtggaa tgccaagaga tggagttgct gtaccgttct caagaaacgc      1680
     ggaagttcta tcagaagctc aacacatccc gcaaaggctt cgtgccgcga gctgagatgt      1740
     gccgggataa ggatgggagc atcttgacgg acggacgcga ggtgatcgaa aggtggaagc      1800
     agcactacga tgaacacctg aatggcgcag agaacacagg cacagaaggt caggacagcg      1860
     aaggcgatgg ctacgtcagc acagcggaca gcggaaatca accagctccc acgatggggg      1920
     aagttaagga tgccattcaa cagctcaaga acaacaaagc cgctggcaag gatggtatcg      1980
     gagccgaact catcaagatg ggcccggaca ggttggccgc ttgtctgcat cggctgatag      2040
     tcagaatctg ggaaacggaa cagctaccgg aggagtggaa gcaaggcgtt atatgcccta      2100
     tctacaaaaa gggcgacaaa ctggagtgtg aaaattatcg tgcaatcacc atcctaaacg      2160
     ccgcctataa agtgctatcc cagattctct tccgtcgtct atcacctata gcaaacgagt      2220
     tcgtgggaag ttatcaagca ggtttcatcg acggccgctc gacaacggac cagatctttt      2280
     ccgtgcggca aatcctccag aaatgccgtg agtaccaggt ccctacgcac catttgttca      2340
     tcgatttcaa ggcggcatac gatagtatcg accgcataga gctatggaaa atcatggacg      2400
     agaacagctt tcccgggaag ctcacaagat tgatcagagc aacgatggac ggtgtgcaaa      2460
     actgcgtgaa gatctcgggc gaacactcca gttcgttcga gtctcggcgg ggactacgac      2520
     agggcgacgg actttcgtgc ctgttgttca atattgcgct tgaaggtgtc atgcggagag      2580
     ccggacttaa cagtcgaggc acgattttca cgagatccgg acaatttgtt tgcttcgcgg      2640
     acgacatgga tattattggg agaaaatttg aaacggtggc agatttgttc acccgcctga      2700
     aacgcgaagc aacaagagtc gggctaatgg tgaatgcgtc gaaaacaaag tacatgctgg      2760
     ttggcggaac tgagcgcgac aggacccgcc taggaagcag tgttacgata gacggggata      2820
     ccttcgaggt ggtggacgag ttcgtctacc tcggatcctt gttgacggct gacaacaatg      2880
     ttagtcggga aatacgaagg cgcatcatca gcggaagtcg tgcctactat gggctccaga      2940
     agaaactgcg gtcaagaaag attcaccccc gcaccaaatg cacgatgtac aaaacgctca      3000
     taagaccggt agtcctctat gggcatgagg cgtggactat gctcgaggag gacttgcaag      3060
     ctcttggggt tttcgaacgc cgagtgctaa ggacgatctt cggcggcgtg caggagaacg      3120
     gcgtgtggcg gcgaaggatg aaccacgagc tcgctcaact ctacggcgaa cccagtatcg      3180
     tgaaggtagc taaagctgga aggatacgct gggcagggca tgttgcaaga atgccggaca      3240
     acaaccctgt aaagatggtg ttcgccacga atccggtcgg aacaagaagg cgtggggcgc      3300
     agcgagctag gtggattgac caggtacacc aggacctgga gagcgtgggt cacagtcgag      3360
     gatggagaga agcggccatg aaccgaggga attggcgaaa tattgttggc gaggctttat      3420
     caagataatt gatgtaaagc caaataagta agtaagtaag taag                       3464
//
ID   JAM1B_AAe   repbase;    DNA;    INV; 3399 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; JAM1B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3399
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1440-1440 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >85%
CC   identity. The consensus is ~89% identical to JAM1.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..3375
FT                 /product="JAM1B_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KNQATNNQRENTNRDNRRRPQRRKGTSDWKLGTWNCK
FT                 SLNFIGSTRILADVLKDRGFGIVALQEVCWKGSMVRTFRGNHTIYQSCGNT
FT                 HELGTAFIVMGDMQRRVIGWWPINERMCKLRIKGRFFNFSIINVHSPHSGS
FT                 TDDDKDAFYAQLEREYDSCPSHDVKIIIGDLNAQVGQEEEFRPTIGKFSAH
FT                 RLTNENGLRLIDFAASKNMAIRSTYFQHSLPYRYTWRSPQQTESQIDHVLI
FT                 DGRHFSDIIDVRTYRGANIDSDHYLVMVKLRPKLSVVNNVRYRRPPRYDLE
FT                 RLKQPDVAAAYAQHLEAALPEEGELDEAPLEDCWRTVKAAINDAAESNVGY
FT                 VGRSRRNDWFDEECQEVLEEKNAARAVMLQQGTRQNVERYRRKRQQQTRLF
FT                 REKKRRLEETECEEMEQLCRSQETRRFYQKLNASRNGFVPRAEMCRDKDGS
FT                 ILTDEREVIERWKQHFDEHLNGAESTGNEGRDNGGNAFVSTAEDGNQPAPT
FT                 LREVKDAIHQLKNNKAAGKDGIGAELIKMGPERLAICLHRLIGTIWETEQL
FT                 PEEWKEGVICPIYKKGDKLDCENFRAITILNAAYKVLSQIIFRRLSPVVNE
FT                 FVGSYQAGFVDGRSTTDQIFTVRQILQKCREYQVPTPLGIMDENSFPGKLT
FT                 RLIRATMEGVQNCVKVSGEHSSSFGSHRGLRQGDGLSCLLFNIALEGVMRR
FT                 AGLNSRGTIFTRSSQFVCFADDMDIVGRTFEKVADLYTRLKREAAKVGLVV
FT                 NAAKTKYMLAGGAERDRARLGSSVTIDGDTFEVVDEFVYLGSLLTADNNVS
FT                 REIRRRIISGSRAYYGLHKKLRSKKIHARTKCTMYKTLIRPVVLYGHETWT
FT                 MLEEDLQALGVFERRVLRTIFGGVQENGVWRRRMNHELAQLYGEPSIQKVA
FT                 KAGRIRWAGHVARMPDSNPAKMVFASDPVGTRRRGAQRARWADQVRIDLAS
FT                 VGQNRGWRDAATNRVLWREIVDSVLSV"
XX
SQ   Sequence 3399 BP; 899 A; 813 C; 1014 G; 671 T; 2 other;
     ggtaaatggc tgggcatggc gtaccattgg tacctcgcgt acctgcagga ataaaataga        60
     cccctttgtg tggtccttag cctcttgccc agcaactcct atccctacct cctcgtggta       120
     ctggccgggg tacgagtaac cttagggaag atcgggtaac caacccccgg tgggaactct       180
     ggtcgtatgc tgacagggaa gggggggttt gcttttgctt ttgcttctgc aaacctggag       240
     cgtctgtact ccatgttagg agcggctcac aacagcgtct gttccccatg tcaggggcgg       300
     ctgatcatcg tccgagtgcc agagaaggac tctaagctaa actgcgcact atggtcctcc       360
     gaacatttag ggggaatggt cctccggaaa tctagggggt tggtgtcagg ccctgcaagc       420
     cagccgtaaa aaaatcaagc aacgaataat caacgagaga atacgaaccg ggacaatcgg       480
     cgaagaccac agcgacgtaa agggactagc gattggaagc tcggtacgtg gaactgtaaa       540
     tctctcaact tcatcgggag cacacgcata ctcgccgacg tgctgaagga ccgcggattc       600
     ggcatcgtag cgttgcagga agtgtgttgg aagggatcaa tggtgcgaac gtttagaggt       660
     aaccatacca tctaccagag ctgcggcaac acacacgagc tgggaacagc ttttatagtg       720
     atgggtgata tgcagaggcg cgtgatcggg tggtggccga tcaatgagag aatgtgcaag       780
     ttgaggatca aaggccggtt cttcaacttc agcataataa acgtgcacag ccctcactcc       840
     ggaagcactg atgatgataa agacgctttt tacgcgcagc tcgaacgcga gtacgacagc       900
     tgcccaagcc acgacgtcaa aatcatcata ggagatctaa acgctcaggt tggccaggag       960
     gaggaattca gaccgactat tggaaagttc agcgcccacc ggctgacgaa cgaaaacggc      1020
     ctacgactaa ttgatttcgc cgcctccaag aatatggcca ttcgtagcac ctacttccag      1080
     cacagccttc cataccgata cacctggaga tcaccacagc agacagaatc acaaatcgac      1140
     cacgttctga ttgatggacg gcacttctcc gacattatcg acgtcaggac ctatcgtggc      1200
     gctaacatcg actctgacca ctatctggtg atggttaaac tgcgcccaaa actctccgtc      1260
     gttaacaacg tacggtaccg acggccgccc cggtatgacc tagagcggct caagcaaccg      1320
     gatgtcgcag ckgcgtacgc gcagcacctc gaggctgcat taccggaaga gggtgagctg      1380
     gatgaagccc ctcttgagga ctgctggaga acagtgaaag cagccatcaa cgatgcagct      1440
     gagagcaacg tcgggtacgt gggacggagt cgacggaacg attggttcga cgaggagtgc      1500
     caggaggttt tggaggagaa gaatgcagcg cgggcggtca tgctgcagca agggacccgg      1560
     cagaacgtgg aacgctatag acggaaacgg caacagcaga cccgcctctt tcgggagaaa      1620
     aaacgccgcc tggaggagac ggagtgcgag gagatggaac agctgtgccg gtctcargaa      1680
     acgcgtaggt tctatcagaa gctcaacgca tcccgcaacg gcttcgtgcc gcgagccgag      1740
     atgtgcaggg ataaggatgg gagcattctg acggacgagc gtgaggtgat cgaaaggtgg      1800
     aagcagcact tcgacgagca cctgaatggt gctgagagca caggcaatga aggacgggac      1860
     aacggaggaa atgccttcgt cagtactgcg gaagatggaa accaaccagc ccccactttg      1920
     agggaggtta aggatgccat tcaccagctc aagaacaata aagctgctgg taaggatggt      1980
     atcggagctg aactcataaa gatgggcccg gagaggctgg ccatttgtct gcaccggctg      2040
     ataggcacaa tctgggaaac agaacagcta ccggaggagt ggaaggaagg ggtaatatgc      2100
     cccatctaca agaaaggcga caagttagat tgtgagaact ttcgagcgat caccattcta      2160
     aatgcggcct acaaagtatt atcccagatc atcttccgtc gtctgtcacc tgtagtaaac      2220
     gagttcgtgg gaagttatca agccggcttc gttgacggcc gatcgacaac ggaccagatc      2280
     tttactgtac ggcaaatcct ccaaaaatgt cgtgaatacc aggtcccaac gcctttagga      2340
     atcatggacg agaacagctt tcccgggaag ctcacgagac tgataagagc gacgatggaa      2400
     ggtgtgcaaa attgtgtgaa ggtttcaggc gaacactcca gttcgtttgg atcccaccgg      2460
     ggactacgac aaggtgatgg actttcgtgc ctgttgttca atattgcgct agaaggtgtt      2520
     atgcggagag ccgggcttaa cagccggggt acgattttta cgagatccag tcaatttgtt      2580
     tgcttcgcgg atgatatgga catcgtcggc cgaacatttg aaaaggtggc agacctgtac      2640
     acccgcctga aacgcgaggc agcaaaagtt ggactggtgg tgaatgcggc caagacaaag      2700
     tacatgctag ctggtggggc cgagcgcgac agggctcgcc taggtagcag tgttacgata      2760
     gacggggata cgttcgaggt ggtcgacgag ttcgtctacc ttggatcctt gctgacggct      2820
     gacaataacg ttagccgtga aatacggagg cgcatcatca gtggaagtcg ggcctactat      2880
     ggcctccaca agaagctgcg gtcaaaaaag attcacgccc gcaccaaatg taccatgtac      2940
     aaaacgctca taaggccggt agtcctctac gggcatgaaa cgtggacgat gctcgaggag      3000
     gacctgcaag cacttggagt cttcgaacgt cgggtgctta ggacgatctt cggcggtgtg      3060
     caggagaacg gtgtgtggcg gcgaaggatg aaccacgagc tcgcccaact ctacggcgaa      3120
     cccagtatcc agaaggtggc caaagctgga aggatacgat gggcagggca tgttgcaaga      3180
     atgccggaca gcaaccctgc aaagatggtg ttcgcttcgg atccggttgg tacaagaagg      3240
     cgtggagcgc agcgagctag gtgggcggat caagtgcgta tcgatttggc gagcgtgggg      3300
     cagaaccgag gatggagaga tgcggccacg aaccgagtat tgtggcgtga aattgttgat      3360
     tcagtgttat ctgtgtagat gttaactaaa taaatgaat                             3399
//
ID   JAM1C_AAe   repbase;    DNA;    INV; 3425 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; JAM1C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3425
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1441-1441 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. The consensus is ~80% identical to JAM1 and
CC   JAM1B_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..3390
FT                 /product="JAM1C_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KSSVQEAYNVNSDRNNRHRPRHRKRTNDWKLGSWNCK
FT                 SLNFLGSTRILSELLRVRKFDIVALQEVCWKGSTVHTYRDGYTIYQSCGNR
FT                 HELGTAFIVMGEMQRRVIGWWPIDNRMCKLRIKGRFFNISIINVHSPHLAS
FT                 DDDDKDAFYAQLEREYDGCPSHDVKIVIGDLNAQVGQEEEFRPIIGKFSAH
FT                 QLTNENGLRLIDFAASKNMAIRSTYFQHSLPYRYTWRSPQQTESQIDHVLI
FT                 DGRHFSDIIDVRTYRGANIDSDHYLVTVKVRQRLSVVNNIRYRRPPRYNLE
FT                 RLKQPEVATEYAQSLEAALPEEGELTEAPLEDCWSSLKAAINNAAEGAIGF
FT                 VEANRRNGWFDEECQTVLDEKNAARAMMLQQGTRQNVERYKQKRRQQTHLF
FT                 RDKKRRLEELECEEMEQLYRSQETRKFYKKLNASRKGFVPRAEMCRDKDGG
FT                 ILTDEREVIERWKQHYDEHLNGAEEEDQDSRRNGFISTADEGDVPTPTIGE
FT                 VKDAIKQLKNNKAAGKDGIGAELIKMGPDRLATCLHRLIARIWDTEQLPEE
FT                 WKEGIIYPIYKKGDKLECENYRAITILNAAYKVLSQIIFRRLSPLASRFVG
FT                 SYQAGFVDGRSTTDQIFMLRQILQKCREYQVPTHHLFIDFKAAYDTIDREE
FT                 LWKIMDENGFPGKLTRLIKATMDSVQCCVKISGALSDPFETRKGLRQGDGL
FT                 SCLLFNIALEGVMKRAGFNMRGTIFNKSSQFICFADDVDIVGRTFQVVAEQ
FT                 YTRLKREADRVGLKVNTSKTKYLLAGGTERDRARIGRRVTIDGDEFEVVDE
FT                 FVYLGSLITSDNNCSREIRRRIIAGSRAYYGLHKTLRSGKLHFRTKCTMYK
FT                 TLIRPVVLYGHETWTMLEEDLQALGVFERRVLRTIFGGVCENGVWRRRMNH
FT                 ELAQLYGEPSITKVAKAGRVRWAGHVVRMPDNNPAKMVFNSNPAGTRRRGA
FT                 QRARWFDQVEQDLGSVGRSRNWRLAAMDRVSWRNIVAQVMS"
XX
SQ   Sequence 3425 BP; 957 A; 779 C; 971 G; 718 T; 0 other;
     gggtggtaaa tgactggaca atgcgtacca ttggtacttc gcgtacctgc aggtataaaa        60
     tagaccccat ttgtggtcct tagcctcttg tccagtaact cctatcccta cctccccgtg       120
     gtgccgcctg ggatacgagt aaccgtaggg aagatcgggt aaccaaccct ggtggaacct       180
     tggtcgtatg ctgacaggga aggggggctc ctctcttctg agggtgtagc ttatcagagc       240
     gtctgttctc catgttaggg gcggctcaaa acagcgtctg ttctccatgt taggagcggc       300
     tgatcatcgt cctagtgcca gcgtgggact ctaaacagtg ctgtgcacga tgatcctccg       360
     gcgagacagg gggttggtgc aggccttaca agccagccgt aaaaatcatc agtacaggaa       420
     gcatacaatg taaattcgga ccggaacaat cggcatagac ccaggcatcg aaaacggact       480
     aacgattgga aactcggatc atggaactgt aagtctctca atttcttggg aagtacccgc       540
     attctttccg aattattgag ggtccgcaag ttcgacatcg tagcgctgca ggaggtttgc       600
     tggaaagggt cgacggtaca tacgtatagg gatggttata ccatctacca gagctgcggc       660
     aatagacatg agctgggcac agcttttatc gtgatgggcg aaatgcagag gcgcgtgatt       720
     gggtggtggc caatcgacaa cagaatgtgc aagttgagga tcaaaggccg tttcttcaat       780
     atcagcataa tcaacgtgca cagccctcac ctagcaagtg acgatgacga taaggacgct       840
     ttctacgcgc agctggaacg tgaatacgac ggctgcccaa gccatgatgt caaaatcgtt       900
     atcggagatc tcaacgctca ggttggccag gaggaggaat ttagaccgat tatagggaag       960
     ttcagcgctc accagcttac gaacgaaaac ggccttagac tgattgattt cgccgcctcc      1020
     aaaaacatgg ccatacgtag tacctacttc cagcacagcc tcccgtatcg gtacacctgg      1080
     agatcacccc aacagactga atcgcaaatc gaccacgttt tgattgatgg aaggcacttc      1140
     tcggacatta tcgacgtcag aacctatcgc ggcgcaaaca tcgattcgga ccactacctt      1200
     gtgacggtta aagtgcgcca acgactctcc gttgtgaaca acattcggta ccgacgcccg      1260
     ccccggtaca atctggagcg actcaagcaa cccgaagtcg caactgaata cgcgcaaagc      1320
     cttgaggcag cgttgccgga agagggagag ctcaccgaag cccctcttga ggactgctgg      1380
     agtagtctca aagcagccat aaacaacgca gcggaaggtg ccattgggtt cgtggaagca      1440
     aatcgacgga acggttggtt cgacgaggag tgtcagacgg ttttggacga gaagaatgca      1500
     gcgcgggcga tgatgctgca gcaaggcacc cgtcaaaacg tggaacgata caaacagaag      1560
     cgaagacagc aaacccatct attccgggat aaaaagcgcc gcctggaaga gttggagtgc      1620
     gaagagatgg agcagttgta tcgttctcaa gaaacacgta agttctacaa gaaactaaat      1680
     gcatcccgca aaggctttgt gccgcgagcc gaaatgtgcc gggataagga tggtggtatc      1740
     ttgacggacg aacgtgaggt gattgaaagg tggaagcagc actacgatga acacctaaac      1800
     ggcgcagagg aggaagatca agacagcagg aggaatggct tcatcagtac ggcggatgag      1860
     ggagacgtgc caactcccac aataggtgaa gttaaggatg ctatcaaaca gctcaagaac      1920
     aacaaagcag ctggaaagga tggtattgga gcggaactta ttaaaatggg cccggacagg      1980
     ttggccactt gtctgcaccg attgatagcc aggatctggg atacagaaca gctaccggag      2040
     gagtggaagg agggaataat atacccaata tacaaaaagg gtgacaagtt agaatgtgag      2100
     aactatcgag cgatcaccat tcttaatgca gcctataaag tgctttccca gatcatcttc      2160
     cgccgtctat cgccactggc aagcagattt gttggaagtt atcaagccgg atttgtggac      2220
     gggcgatcga cgacagacca aatctttatg ttgcggcaga tcctccaaaa gtgtcgcgaa      2280
     tatcaagtcc ctacgcacca cctattcatc gatttcaaag cggcctatga taccatcgac      2340
     cgcgaagagc tatggaagat tatggacgag aacggttttc ccgggaaact gactagactg      2400
     atcaaagcta cgatggatag tgtacagtgc tgtgtgaaga tatcgggtgc tttatcggac      2460
     ccgtttgaaa cacgcaaagg acttcgacaa ggcgatggtc tttcctgcct cctgttcaat      2520
     attgcgctag aaggtgttat gaaacgggcg ggcttcaaca tgcggggcac gatcttcaat      2580
     aaatccagcc agttcatttg tttcgctgac gacgtggaca ttgtcggaag aacgttccag      2640
     gtggttgctg aacagtatac caggctgaaa cgtgaagcag atcgggttgg attgaaggta      2700
     aatacgtcga agacgaaata tctgctggct ggaggaaccg agcgcgatag agctcgcata      2760
     ggcagacgcg tgacgatcga cggggatgag ttcgaggtgg tggacgaatt cgtctacctc      2820
     ggatcattga taacgtcgga taacaactgc agcagagaaa ttcgaagacg tatcatcgcc      2880
     ggaagtcgtg cttactatgg actccacaag accttgcggt ctggtaaact tcacttccgt      2940
     actaagtgta ccatgtacaa gacgctaata agaccggtag tcctctacgg gcatgagacg      3000
     tggacaatgc tcgaagagga cctgcaagcg ctaggagttt ttgaacgacg tgtgcttagg      3060
     acgatcttcg gcggagtatg tgagaacggc gtatggagga gaagaatgaa ccacgagctt      3120
     gcgcaactct acggtgaacc cagtatcacg aaagtcgcca aagctggaag ggtacgatgg      3180
     gcgggacacg ttgtgagaat gccggacaac aatcccgcaa aaatggtgtt caactcaaat      3240
     ccggccggta caagacgaag gggagcgcaa cgagctaggt ggtttgacca agtggagcag      3300
     gatcttggaa gtgtggggcg atcgaggaat tggaggttag cagccatgga ccgagttagt      3360
     tggcgtaaca ttgtggcgca ggtcatgtct tgaaggacgt agcgccagca aaagtaaagt      3420
     aagta                                                                  3425
//
ID   Jockey      repbase;    DNA;    INV; 5020 BP.
XX
AC   M22874;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 4)
XX
DE   D.melanogaster LINE element J-1.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   LINE repetitive sequence; dispersed repetitive element;
KW   long interspersed element; J1; LINEJ1_DM.
XX
NM   LINEJ1_DM; Jockey.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5020
RA   Priimaegi F.A., Mizrokhi J.L. and Ilyin V.Y.;
RT   "The Drosophila mobile element jockey belongs to LINEs and
RT   contains coding sequences homologous to some retroviral
RT   proteins.";
RL   Gene 70, 253-262 (1988).
XX
DR   GenBank; M22874; Positions     115    5134.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..2048
FT                 /product="Jockey_1p"
FT                 /translation="MENSFAQSRPSNGCDKFEKMRKVAGVEPGELRSQLRA
FT                 SCAVVSPNLEGMPTQSAVSSLMVTISSNTNASVTCTISNVQANMICTPTYT
FT                 DCTTVTTSICPTTPYDNGLPTPLSSLPNKPSKANCPFQAHDRTVNRKRKGV
FT                 SQPPLPILTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENM
FT                 EQDVSDADSDIEDSAARDGGGQSAKYSKPPAICVPSVSDPVTLERALNLST
FT                 GSSNYYIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYR
FT                 VVLKGIHANVPSSQIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATK
FT                 NFKTRQNLFYINLKQGPNVKESLKITRLGRYRVTVERATRRKELLQCQRCQ
FT                 IFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCP
FT                 VRAEKAKKLKPRSRLPMTNNIATLKPPQRSSSGYIPAEALRTNISYADIAR
FT                 RNTTQSRARATVQAEVIPTSDNSLNNKFMTLDNSIRAINTRMDELFKLIHE
FT                 TVEANKAFRELVQVLITRIPK"
FT   CDS           2048..4795
FT                 /product="Jockey_2p"
FT                 /translation="MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLT
FT                 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTN
FT                 DRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDY
FT                 NAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALD
FT                 FFITCGYGMGRLDVQTLQELSSDHLPILAVLHATPLKKPQRVRLLAHNADI
FT                 NIFKTHLEQLSEVNMQILEAVDIDNATSLFMSKLSEAAQLAAPRNRHEVEA
FT                 FRPLQLPSSILALLRLKRRVRKEYARTGDPRMQQIHSRLANCLHKALARRK
FT                 QAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCRTSLE
FT                 KTEVFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPLSAVTLEEVKN
FT                 LIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKS
FT                 ASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIP
FT                 KFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPG
FT                 LLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLG
FT                 PTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQ
FT                 EYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYK
FT                 YLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKS
FT                 ILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDL
FT                 KVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKR
FT                 HHPHDLPNLVLT"
XX
SQ   Sequence 5020 BP; 1527 A; 1198 C; 1055 G; 1240 T; 0 other;
     aaaaatcatt cacatgggag atgagcaatc gagtggacgt gttcacagaa gtcgcgagat        60
     aaaacaaaaa cgtaattgtg atccatcaca aacatctgcg cagatcgtgt gcttatctca       120
     caaacaaaat ctatttttag tcactgcata acggtgacgg cttcggttcg cgaaacttat       180
     cagcaactag caatttctaa gctgtgttgt ttttgcccct cgccctgcgc gctgcgcaag       240
     cgggaggttg ttacaattta ccttacaagt aaaccggtaa atcttatcgt gtttagtaaa       300
     tatcaattgc attatacggc ataagtataa agacaattga tataatggag aattcatttg       360
     ctcaatcgcg acctagcaat gggtgcgata aatttgagaa aatgaggaaa gtagcaggtg       420
     ttgagccagg agaattacgc tcccaactcc gcgccagctg tgcagttgtt tcccctaacc       480
     tggaaggtat gccaactcaa tctgcggtct ccagcttaat ggtgacaatc agcagcaaca       540
     ccaatgcaag tgttacctgc actatttcta acgtacaggc caacatgatc tgtactccta       600
     catacactga ttgcacaacc gtgaccacta gcatttgccc aactacgcct tatgacaatg       660
     gactgccgac acctctgtca tcactgccca ataagccatc taaagcgaat tgcccctttc       720
     aagcacatga tcgtactgtc aacaggaaac gaaaaggcgt gtctcagccc ccattaccta       780
     tcctcacccc ttctccaagc cgtaaaacta aaaggcaggc cactatgcca ctcaatgagg       840
     aggcctctac ctccactgca gcagcattaa ataacaatcg cttcgcgctt ttgtccgctg       900
     aagcggagaa tatggagcaa gacgtgtcgg atgctgattc tgacattgaa gactctgctg       960
     cccgagatgg tggtggacaa tccgctaaat atagcaaacc cccagccata tgcgtaccaa      1020
     gtgtaagcga tccggtcacc ttggaacggg ctctcaatct gagcaccggc tcctcaaact      1080
     actacatccg catttctaga tttggtgtat ccagaatcta tacagccaac cctgatgctt      1140
     tccgcaccgc tgtaaaagaa ctaaataagt taaattgtca attctggcat caccaactta      1200
     aagaagaaaa accctacaga gtagtgctta aaggaatcca tgctaatgtt cctagttcgc      1260
     agatagaaca agcatttagt gatcacggct atgaggtcct taatatctat tgccccagaa      1320
     agtctgactg gaagaacatt caggtaaacg aagatgataa tgaagctaca aaaaacttca      1380
     aaactagaca aaatttgttt tatattaatc ttaaacaagg cccgaatgtt aaagagtctc      1440
     ttaagataac tcgacttggc agatacagag tcactgttga gcgcgctaca cgtagaaaag      1500
     aactgctaca atgtcaaaga tgccaaattt ttggacactc taagaactat tgcgcccagg      1560
     atcctatttg tggtaaatgt agtggtcccc atatgaccgg gttcgctttg tgcataagtg      1620
     acgtatgtct gtgtataaat tgtggtggtg atcatgtctc gacagacaaa agctgccctg      1680
     tcagagcaga gaaagccaag aagctaaaac caaggtccag gctaccgatg actaataata      1740
     ttgccacact caaacctcca caacgttctt caagcggtta cataccagct gaggcattaa      1800
     gaaccaacat ctcttatgct gatattgctc gacgcaacac gactcaatct agggctcgtg      1860
     ctactgtgca ggctgaagtt ataccaacgt cggacaatag ccttaacaat aaatttatga      1920
     cgttagacaa ctccattcgg gccatcaata cgagaatgga cgaactattt aagcttatac      1980
     acgaaactgt agaggctaat aaagctttca gagaactggt tcaggttcta attacacgta      2040
     ttcctaaatg actcaaccaa ccttaaaaat cggattgtgg aacgctcgcg gattaacaag      2100
     gggctctgag gagcttcgga tattcctcag cgatcacgat atagacgtaa tgcttaccac      2160
     ggaaacacac atgcgagttg gtcagcgcat ctatctccca gggtatctta tgtatcacgc      2220
     ccaccacccc agtggtaaca gtagaggtgg ctctgcagtc atcataaaat ctagactttg      2280
     tcacagccct ctgacaccta tctctactaa tgacaggcag atagcgagag tgcacctgca      2340
     aacatcggtt gggaccgtca ctgtagctgc tgtttatcta cctccagcag aaagatggat      2400
     agtagatgac ttcaaatcca tgtttgctgc gttaggcaac aaatttattg ctggtggtga      2460
     ttacaatgcc aaacatgcat ggtgggggaa cccaagatcc tgtcctagag gtaaaatgtt      2520
     gcaagaagtc attgcacatg ggcaatacca agttctggct acgggcgaac ccactttcta      2580
     ctcttacaac cctttgttaa caccatcagc ccttgatttt tttataacct gtgggtacgg      2640
     catgggcagg ctagatgtac aaactctcca ggaactctcg tcggaccatc ttcctattct      2700
     ggctgtattg cacgctacgc cgttaaagaa accacaacgc gtacgactac ttgcccataa      2760
     tgctgacata aacatattca aaacccatct tgaacagctg agtgaggtaa atatgcaaat      2820
     tctggaggcg gtggacattg ataatgccac aagccttttc atgagcaaac taagtgaggc      2880
     tgctcagctt gctgcaccga gaaatcggca tgaagtagag gccttcagac cacttcaact      2940
     tccttccagt atattggcac tgctcaggct aaaacgaaga gttcgaaaag aatatgctag      3000
     aacaggtgat ccccgcatgc aacagatcca cagtagactg gccaactgcc tgcataaggc      3060
     ccttgctcga agaaagcagg cccaaataga taccttcttg gataacttgg gtgctgacgc      3120
     gagcacaaat tactcactgt ggcgtatcac gaaacggttc aaagctcagc ccaccccaaa      3180
     atcagcaatc aaaaatccgt ctggtggctg gtgtcgcact agcttggaaa aaactgaagt      3240
     gttcgctaac aaccttgagc aacgttttac accctataac tatgcaccgg aaagtctctg      3300
     tcgtcaggtt gaagaatact tggaatcgcc ctttcaaatg agcctgcctc tgagtgctgt      3360
     cacactggaa gaagtgaaga atttaatagc caagctgcca cttaagaaag ctcctggaga      3420
     agatcttctt gataatagaa ccattagact tctcccagat caagcattgc agttccttgc      3480
     cttaatattc aacagcgttc ttgatgttgg ctactttccg aaagcttgga aatcggcgag      3540
     cataattatg atccataaga ctggaaaaac accgacagac gttgactcgt acaggcccac      3600
     cagcttactc ccatctctgg gtaaaattat ggagaggctg atcctaaaca ggctgctcac      3660
     atgcaaggat gttaccaaag cgattcccaa atttcagttt ggcttccggt tgcagcacgg      3720
     tactcctgag caactacata gagtagtgaa ctttgctctg gaagctatgg aaaacaagga      3780
     gtatgcagta ggtgcctttc ttgatattca acaggcattt gacagagtct ggcaccctgg      3840
     gctcctgtac aaagcgaaga ggctgttccc gccgcagcta tatttggttg ttaaaagttt      3900
     cctggaagaa cgcacattcc acgtctctgt tgatgggtac aaatcatcaa tcaagccaat      3960
     tgcagctgga gttcctcaag gaagcgttct tggcccaacc ctatactcag tttttgcttc      4020
     ggacatgcct actcacacac cagtcacaga ggtagacgaa gaagatgtgc tcatagccac      4080
     ctacgctgac gatactgctg tgctcacgaa aagtaaaagt atcctggctg ccacttctgg      4140
     tctacaggaa tacctggatg cattccagca atgggctgag aactggaatg tgcgcatcaa      4200
     cgctgagaag tgtgccaatg tgacgttcgc caaccgaaca ggtagctgtc cgggtgtcag      4260
     tctgaatgga agactgatca gacaccatca ggcttataaa taccttggta ttaccctcga      4320
     taggaagctc accttcagca ggcacatcac aaatattcag caagcgttca ggaccaaggt      4380
     tgctcggatg tcttggctca ttgcaccacg caacaaactg tcgcttggct gcaaggtcaa      4440
     tatttacaag tccatattgg ccccctgcct gttctacggc ctgcaggtat acggcattgc      4500
     tgcgaagagt caccttaata agatccggat tttacaggcg aagaccttaa gaagaatttc      4560
     gggggctcct tggtatatga gaacaagaga catcgaacgc gacctcaagg tgcccaaatt      4620
     aggagacaag ctccagaaca tcgcccaaaa atatatggaa aggcttaatg tacaccccaa      4680
     cagcctagca aggaagctag gaactgcagc tgtggtcaat gctgaccctc ggactagagt      4740
     caaaagaaga ctcaagcgac accaccctca tgacctccct aacctggttt tgacctagaa      4800
     agtcttagtt ttaaaattca ttagaataat caaataaata ataattacta tgttatatca      4860
     actattataa ttctccctat catttttaga ttaaaaatct gttagtctta agtaaccaag      4920
     acacattgta aaataaaata atttaagcag atcaaattaa gttgccgcat gggtaacagt      4980
     gcgttgatca aataataaaa acatcataaa aaaaaaaaaa                            5020
//
ID   Jockey-10_BTa repbase;    DNA;    INV; 5385 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5385
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 954-954 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           570..2336
FT                 /product="Jockey-10_BTa_1p"
FT                 /translation="MTKAXNMVKTLSSDENELVNRINSLEAENAKKIQKLQ
FT                 EQINAISSANASSRSRDAHLQSAKELVKNNSRKPSGQSKLTQFATGKPVTS
FT                 TTPVSNQFAFLEDDVESNHDADDSESSDTWVDYNSDPEFNSKRKAIQSQRR
FT                 KRKRASTSASSGHTDNQXTKPGESAPVXVNIPNHSVSNASSVKKILPPPPI
FT                 EVIGVDNYVNLVEIITKKSVKKEDVRTKIINNEVWQLNPKDDATAKIILES
FT                 LRETHETNNKVQYYTHCDKNLRDIKVIVRGLHPSIEEQDILDDLKNKGFKP
FT                 KKATCLMKRVPLSDAELKALRKSVSPVVPAPQTADPKSVPEQNSVSAMETN
FT                 SAVNETTSDETYPPETIVDKDNEPLFIADSAYVSKTKLIKIPVHQVDFDYT
FT                 DDIEKIYKIVGICSMVVKVEPIEVSTTKIIQCRKCQNFGHSXAYCGKQARC
FT                 VKCAAKHLSAECPWAKRIINPKXANCGATGHPASYRGCPFAKAMQKDREKS
FT                 IKMRKGKIDGSNFPNFPDKPNKKKKGGKNPPSAIKQGVSFADAVSGPKPSN
FT                 QQEELISQLLMTIESLRKQLEEMSKRQEKYEQALMSRVLSSR"
FT   CDS           2341..5064
FT                 /product="Jockey-10_BTa_2p"
FT                 /translation="MTNKSESILNLIAWNANGLKPAKLLEFSEKMAKLRVD
FT                 IALFSETHFARESRGYLKGYRFYNSRHPSNNARGGASIAIRENIKHSVLEI
FT                 VEEERFQAVIIQIESSLGPFNVSAIYAPPRHRCSVDDYSGLLDKLGPRFLI
FT                 GGDFNCKNVRWGSRLTNPKGDNLETAVNLIGGDFISPGKPTFYPGNPLKEP
FT                 DVIDFFIFNNLNLNNKTSCNVLEGKKDHVPVFLSIFATPVLVKRPPCLIST
FT                 QTDWKKFRELLTSRINNSTSINDCSTLDKEAESLISSIQEAAKASTPVART
FT                 FNNFHHKCTLPKEILSLIDRKNKAGRRRRITHHESDKNLYNRLNKAVEKRI
FT                 NEFRNEKFEKFVANLSPSEANDYTLWKATKSLKRPFLASFPIRKPDGEWAN
FT                 NSQEKAHTIADHLEKVFQPNPCESPEKECELEEEVGNINFLPAEKINKITY
FT                 DEIFKEIKYKTKIKKSPGFDLISAIILKQLPPAAIKKLEALFNAALSLKYI
FT                 PSQWKLAEVIVILKSGKPPSAPSSYRPISLLPLICKLFEKLYIKRLLAIVN
FT                 KKKLLPNEQFGFRAKHSTIEQLHRISSYIEKALEEKQFCNVVFLDVAQAFD
FT                 KVWHSKVAFKLSKILPGNHVQLIMSYLADRSFRVRFEDSYSEFRKIRAGVP
FT                 QGSVLSPLIFSLFTADVPKPKKGKIGIFADDTAVASSAPTYEETVTNIQEC
FT                 LDDIQDWTERDRTALNATKSVNVVFTLRPYVYVPVILNKIAIPHAQKAPYL
FT                 GLTMDCKLKWKEHILNKKKQIDLKHRQMLWLLGKRSKLKLKNKVLLYKSML
FT                 RPIWVYGCQIWACAASSNLKIIETIQNKILRQMAGARWYERNIDIRDELGI
FT                 EEMDMYISRMYNRYEERLGGHPNPEAIALLDWGSETRRLKRRKPHELSTAH
FT                 FRRC"
XX
SQ   Sequence 5385 BP; 1791 A; 1111 C; 1062 G; 1404 T; 17 other;
     cactcgttgt kgtgctctga ggcgagacgg tcgcgcttca gctcasgccg gatcagtatt        60
     tttcaacaaa ttttcggaaa gaaaatcacc agcatgtgat tctgctggaa tcgagaagag       120
     tgctcgcgtc gcggtgttmt kgskgccggg tcccgagtga tattagtgcc agtgtcatca       180
     taaacaataa acaatcgtac ggcagaccgg cctgtagtgt gtaaacacgg wgtcaagtgt       240
     agttacgtca gcaacgtttt tctcgggtgc gaaaaatgtc taaagcgggg attgctcatc       300
     ggcctacctc gaattaaact ggacacgttg ccaaatakcc aaatggaaaa tcaaaatccg       360
     ttcgggagaa gttctcttct cccgaggtct cccccccccc ccctcagtcg gcaagggcgg       420
     atgataacct ctctctwatt gctacggagt caagcttgac agcggtkgcg tcggtagaag       480
     ataaagaaac aattattaat gaaattttaa acaccagcat tgaccctgtt cttcaggccc       540
     ctaccattca taaatcagtt aagagtttta tgaccaaggc gcawaacatg gtcaaaacgc       600
     tgtccagtga cgaaaatgaa ctggtgaata gaatcaattc ccttgaagca gaaaatgcga       660
     aaaaaataca gaaattacag gaacaaatta atgckattag ctctgcaaat gcaagctctc       720
     gatctagaga tgcccatcta caatctgcga aagagttagt taaaaataac tctcgtaagc       780
     cctcagggca atctaaatta acacagttcg ccactgggaa accagttaca tctacaacac       840
     ctgtttctaa ccaatttgcc tttctggaag acgacgtgga atcgaatcac gatgctgatg       900
     actctgaatc ttccgacaca tgggtcgact acaactcgga tcccgaattt aactccaaac       960
     ggaaagcwat ccaatctcaa agaaggaagc gtaagagagc gagtacttca gcttcaagtg      1020
     gccataccga taatcaacam accaaaccgg gtgagagcgc tccagttama gtaaatatac      1080
     ccaatcatag tgtatcaaat gcatctagtg ttaagaaaat tttacccccc cctcccattg      1140
     aagttatagg tgtagacaat tatgtcaatc ttgtagaaat aatcacaaaa aaatcagtta      1200
     aaaaggaaga tgtcagaact aaaattatta ataatgaagt ctggcaacta aatccgaaag      1260
     acgacgctac ggcgaaaata attttagaat ccctcagaga aacacacgag actaataata      1320
     aagtgcaata ctacactcac tgcgataaaa atctgcgtga tattaaagtt attgtaagag      1380
     ggcttcaccc ttcaatcgaa gagcaagata ttcttgacga cttaaaaaat aaaggtttta      1440
     aacctaaaaa agcgacttgc ctcatgaaac gcgtcccact gtcggacgcg gaacttaaag      1500
     ctttgagaaa atcagtatca cctgtggttc cagctccaca gacggctgat cctaagtcag      1560
     tgcctgagca aaactcagtc tcggctatgg aaacaaattc cgccgtcaat gagacaacct      1620
     cagacgaaac ctacccccca gaaacaattg tagataaaga taatgagcct ctttttattg      1680
     ctgactctgc ttatgtaagt aaaactaaac tgataaaaat accggtccat caggtcgact      1740
     tcgactatac tgatgatata gaaaaaatct ataagattgt tggtatttgt tctatggttg      1800
     taaaagtaga acccattgaa gttagtacta ctaagataat acagtgtcga aaatgtcaaa      1860
     atttcggaca ttcccwagca tattgtggta agcaagcacg ttgtgtaaag tgtgcggcta      1920
     aacatttatc cgcagaatgc ccttgggcga agcgcattat caaccctaag wgtgcaaatt      1980
     gtggggcaac aggtcacccg gctagctata gaggctgccc ctttgcgaaa gcgatgcaaa      2040
     aagacagaga aaaatctatt aaaatgagaa agggaaagat cgatgggtct aattttccta      2100
     acttcccaga taaaccaaat aaaaagaaaa aaggggggaa aaatcctcct agtgctatta      2160
     aacaaggagt tagcttcgcc gacgcagtat ccggcccgaa accctctaat caacaggaag      2220
     agctcataag tcaactctta atgaccattg aatcattaag gaagcaacta gaggagatga      2280
     gtaagagaca ggaaaaatac gaacaggctc ttatgagccg agtgttgagt tctcgataaa      2340
     atgactaaca aaagtgaaag cattcttaat cttatcgcat ggaatgcgaa tggattaaaa      2400
     cctgctaaac tcttagaatt tagtgaaaaa atggcaaaat tacgtgtaga tatagcattg      2460
     ttctctgaaa cccattttgc tagggaatcg agaggatact tgaaaggata tagattttat      2520
     aattcacgac atccttctaa taacgctagg gggggagcct ctattgctat cagggaaaac      2580
     attaaacact ccgttcttga aattgtagaa gaagaacgtt tccaagcggt gattattcaa      2640
     attgagtcat cgctggggcc atttaatgtc agcgctatat acgctccacc gcgtcatcga      2700
     tgctcagttg acgattattc tggcttactt gataaattgg gtcctcgctt ccttatcggg      2760
     ggggacttca actgtaaaaa cgtcagatgg ggttcgagat taactaaccc gaaaggtgat      2820
     aatcttgaaa ctgcagtcaa tcttatcgga ggtgatttta tctctccggg taaacccacc      2880
     ttctatccag gtaatccatt gaaagagcct gacgtaattg attttttcat cttcaataat      2940
     ctcaatctca ataacaaaac ttcttgcaat gtgttagagg gaaaaaaaga tcatgtgccg      3000
     gttttcttat caatatttgc tactccagta ttagttaaac gcccaccctg tctaatttct      3060
     actcaaacag actggaaaaa atttcgagaa ttattaactt cccgtattaa taactcgact      3120
     tcaataaacg actgctccac acttgataag gaggcagagt cattaatttc gagcatccaa      3180
     gaagctgcaa aagcaagcac gccggttgct agaactttta ataattttca tcataaatgc      3240
     actcttccaa aggaaatact cagccttatt gaccgcaaaa acaaagcggg aaggaggaga      3300
     cggattactc accatgaatc tgataaaaat ctctacaata gactaaacaa ggcagtggag      3360
     aaacgtatta atgaatttcg taatgaaaaa tttgaaaaat tcgtagctaa tctcagccca      3420
     agcgaagcta atgattacac cctttggaaa gcgacaaaat ccctaaaacg tcctttccta      3480
     gctagcttcc caattagaaa acctgacggt gaatgggcaa ataatagcca ggaaaaagcc      3540
     cataccattg ccgatcacct tgaaaaagta tttcaaccta acccctgcga atctccagag      3600
     aaggaatgcg aactagagga agaagttggt aatattaatt ttctccctgc agaaaaaatc      3660
     aacaaaatta catatgacga aattttcaag gaaattaaat ataaaacaaa aatcaagaaa      3720
     agtccaggtt ttgatcttat ctcagcaatt atcctcaagc aacttcctcc tgcggcaatc      3780
     aaaaagttag aagcactctt taatgcagcg ttgtcattga aatacatccc tagtcaatgg      3840
     aaattggctg aggtgattgt tattttaaaa tccggaaaac ctccttcagc ccctagttcg      3900
     taccgcccta tctccttact tcccctgata tgcaaacttt tcgagaagtt atatattaaa      3960
     cgtttactgg caattgtaaa taagaaaaag ttacttccta atgagcagtt tggtttcagg      4020
     gctaaacata gcacaataga acaattacac cggatctctt cttacattga aaaggcgcta      4080
     gaggagaaac agttttgtaa tgtagttttc ttggatgtcg cccaggcatt tgacaaagtc      4140
     tggcattcta aagtggcttt taaactttca aaaatcttgc ctgggaacca cgtgcaatta      4200
     ataatgtctt atttagcaga tagatctttt agggttcgat ttgaagactc ttactctgaa      4260
     tttaggaaaa taagagcagg ggtacctcaa ggttcagtac tctcccccct aatctttagt      4320
     ctcttcaccg ctgacgtacc taaacctaaa aaaggaaaaa tcgggatctt tgctgacgac      4380
     acggccgttg cgtcctctgc gcccacatat gaggagacag tcactaacat ccaagagtgc      4440
     ctggacgaca tccaggattg gactgagcgc gatcgcacgg cgcttaacgc caccaaatca      4500
     gttaacgtgg tctttacctt aagaccatat gtttatgtcc ctgtgatcct aaataaaatt      4560
     gctattcccc atgcacaaaa ggctccttac ctcggcctta ctatggattg taagttaaaa      4620
     tggaaggagc atattctaaa taagaaaaag caaattgact taaagcacag acagatgcta      4680
     tggcttctcg ggaagcgatc taaattaaag ctaaaaaata aagttttact ttataaatca      4740
     atgttaaggc caatctgggt atacggctgc cagatttggg cgtgtgccgc cagttctaat      4800
     ctcaaaatta ttgagacaat tcaaaataaa atactcagac aaatggcagg ggccaggtgg      4860
     tacgagcgaa acatcgatat tagagatgag ctcgggatcg aagagatgga catgtacatc      4920
     tcacgtatgt acaatagata tgaagagaga ctgggcggtc accccaatcc cgaagcaata      4980
     gcgcttttgg attggggctc cgagacccgg aggttaaaaa gacgaaaacc acatgagttg      5040
     agcacggctc atttccgtcg gtgttaggct cgtgcctctg gcccctacca gtcttagtcg      5100
     actgacaggg cgaaagcata gttagtagga aaattctcta gaatctagtt ctaggaataa      5160
     ttatagttaa tattagttag tttttgctcc cgctttttac aggattttac ttctatctca      5220
     tttgttcatc cttcatttca ttctcattaa tgtaatccat aaagcggtgt ttacttctat      5280
     tttattatat taggcttaaa gaaaaatttg taaagactcg taaggtctag taatataagt      5340
     tgtaatccaa tatgtgtaat tacaaaaaat aaataaaaaa aaaaa                      5385
//
ID   Jockey-10_DAn repbase;    DNA;    INV; 4359 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4359
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 391-391 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           235..1503
FT                 /product="Jockey-10_DAn_1p"
FT                 /translation="MYDESVACARDTSPVSWQVVSSKRKGRSPSINERRKM
FT                 ARQLRSRSSTISITDSDDFVSEPTRSKAKLSLAGKKVSTQTXSSNSFAMLA
FT                 TQEIDMDQATSSSNQAPVVPPISKPPPIFIPAVANISDMLKSLTDLVSSDG
FT                 FIYKAGRDGQVRIMASSEDNYRSIVRXLTLKNAEFHTYQLKQERAYRAVIR
FT                 NLHHSTPLDHIKDALRKIGHSVRHITNAKNRITKAPIAMFFIDLEPATNNK
FT                 SIFEVKRLCNAIVSIEPPKKFNDLIQCHRCQEFGHTQSYCRKSYRCVKCGS
FT                 NHKTSDCTKPREDPAKCVHCGDSHTASYRGCRIYKAAVQMRDQGKPRQTVG
FT                 NLQARPAPSGMTYTNPYPQTNNETLSYANVAGGHANKPKHASGESDQSLVA
FT                 QIQSMMQLMQAQFAQMTQMMSAIIASLCK"
FT   CDS           1497..4217
FT                 /product="Jockey-10_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQIGIKLVLWNANGLCKSRPEVEMYIKRNNIDILLVS
FT                 ETHFTDRSYFKIKGYNTIHANHPSGNARGGAAVVIKSNIKYSERAPILEHW
FT                 FQAAVLSIDTPTGSLILAAAYAPPRHKITTDMFTQIFTQMGRRFIIGGDFN
FT                 AKNTWWGSRLCNPKGNALLSCIHSMHLTPLSSGSPTYWPTDPNKVPDVLDF
FT                 AVTCGVNRNLIHIENDFDLLSDHCAVLLKLNLPIMNQKRTTRLIRNSSNVE
FT                 LFKTTLEERLNPNIVLNSGEDIEEAVETLTRSIHDAANLCTAPNPTSTVHP
FT                 QRQRGDRHLHSAEITEQLRIKRRLRRVWQLSRNPLDKTAFNRASKDLNTLI
FT                 YELRNEALAEYLRHAEPNSLEHNLWNNTKYLKRPTKRIPAIISSTGSWCRS
FT                 NEEKAETFALHLQRTFTSFNLCSATDATNTQTFIESPCQMDLPIRTIHEDE
FT                 VKCIVSSLKAAKSPGYDAIDATTIKCLPPRAIAFLTVIYNGIIRLHHFPSQ
FT                 WKCAEIIMIPKPGKPEQDPASYRPISLLAILSKVFERIFLARLLPVLEDGN
FT                 LIPEHQFGFRSQHGTPEQCHRVSQTILNSFEDRKYCSAAFLDVKQAFDRVW
FT                 HLGLLYKLKSMLPAPFFLLLKSYLHRRLFFVRCEWAESEIFEVKAGVPQGS
FT                 VLGPILYTLFTADIPVLVRDDLVVATYADDTACLATSTDHVEASAILQQQL
FT                 SKLEPWLLRWNIVVNESKSAHITFATRPKCCPEVRLNGTTLPVVNKVKYLG
FT                 LTLDRRLTWAEHIKNKKKQLSLKLRQMKWLLGYRSQLSLRNKVLLYKVILK
FT                 PIWTYGIQLWGTASTSNIDVLQRFQSITLRRLAKAPYYVRNQVIHKDLEVP
FT                 SVTEEVKRYALKYQERLDRHCNPLAVNLLDNSQHRRRLKRHHPLDLPFRPP
FT                 KEW"
XX
SQ   Sequence 4359 BP; 1390 A; 1097 C; 876 G; 990 T; 6 other;
     cactcgcgat cgaacwcttg ccgagtgcag acgtgcgtac ttacctgttc taaagtctct        60
     gactacaaca acacatwtac aaaacatttc taattctaat cagcggtgcg ttgctgctat       120
     tggtcaataa aatcgcgcga cccgtgcata caagtaatta wctgttctgt tgcgcatgcg       180
     caaaaacaag tggcttttca cagagcacct tctggtgtct caccactggg tgagatgtat       240
     gatgaaagcg tggcwtgtgc cagagacact agccccgtgt catggcaagt agtttcatcg       300
     aaacgtaaag gaagaagtcc atcgattaat gaaagaagaa aaatggcaag acaacttaga       360
     agtcgctctt caacgatctc gataactgac agtgacgatt tcgtatctga acctactcgc       420
     tcaaaagcca agctatcact ggccgggaag aaggtctcca cacaaacaaw ttcttccaac       480
     agttttgcta tgttggctac tcaggaaata gacatggacc aagctacctc ttcatcaaac       540
     caagcaccag tcgttccgcc tatatccaag ccgccgccaa tattcattcc agctgttgcc       600
     aacatatcag atatgctaaa gagtttaacc gatctagtca gtagcgatgg ctttatctac       660
     aaagctggcc gggacggtca agtccgaata atggctagta gcgaagataa ttacagaagc       720
     atagtcagaa tkctaacgct aaaaaatgca gagtttcaca cttatcagct caagcaagaa       780
     agagcatata gagcagtcat acgaaatctc catcacagca caccacttga tcacatcaaa       840
     gacgccctgc gtaaaattgg ccactctgtc cgccacataa ccaacgccaa gaatcgtatc       900
     accaaggccc cgattgctat gttcttcatt gatctggagc cagccacgaa caacaaatct       960
     atatttgagg tcaaaagact gtgcaacgca attgtcagca tcgagccccc caagaagttc      1020
     aacgacctca tacaatgcca caggtgtcag gagtttggcc acacccaaag ctattgccgc      1080
     aagtcgtacc gctgcgtcaa atgcggtagc aaccacaaaa cctctgactg caccaaacct      1140
     cgcgaagatc cagctaaatg cgtccactgc ggagacagcc ataccgcctc ctatagaggt      1200
     tgcaggattt acaaagctgc ggtacaaatg cgggatcagg gaaaacctag gcaaacagtt      1260
     ggtaatctcc aagctcggcc tgctccttca ggcatgacat acacaaaccc ttacccacaa      1320
     accaataatg aaaccctcag ctacgctaat gttgcaggag ggcatgcaaa caaaccaaag      1380
     catgcgtctg gtgagtcaga tcagtcatta gttgcccaaa tccagtcaat gatgcaactt      1440
     atgcaagcac aattcgcgca gatgacgcaa atgatgagcg cgattatagc ttcactatgc      1500
     aaataggtat caagctggta ctctggaatg ctaacggcct atgtaagagt aggcccgaag      1560
     ttgaaatgta catcaaaaga aacaacattg acatattatt agtctcagaa actcacttca      1620
     ctgacagatc ctactttaaa atcaaaggct acaacacaat tcacgccaac catcccagtg      1680
     gcaacgcaag aggtggcgca gcagttgtta ttaaatcgaa catcaaatac tcagagcgtg      1740
     cccctatcct tgagcattgg tttcaagcag cagtgttgtc gatcgatact ccaactggaa      1800
     gtctgatact ggcagcagct tatgcaccac caaggcacaa aataacgaca gacatgttta      1860
     ctcaaatttt cacacaaatg ggacgcaggt tcataattgg aggggatttt aacgcaaaaa      1920
     acacatggtg gggttctaga ttatgtaatc cgaaaggtaa tgcactactg tcctgcattc      1980
     attcaatgca cctcacccca ctttcgtctg gaagtcccac ctactggcca acggacccaa      2040
     ataaagtgcc tgatgtttta gattttgcag ttacttgcgg ggtgaacaga aatttaatac      2100
     atatcgagaa tgactttgac ctgctatccg atcactgcgc tgtcctactg aaattgaatt      2160
     tacccataat gaaccagaaa cgaacaacta ggctgataag gaatagctcg aacgttgaat      2220
     tattcaaaac aaccttagag gagaggctga atcccaacat tgtgctaaac tcgggtgaag      2280
     acattgagga agctgtggaa acactcacgc gcagcatcca tgacgcagca aacctctgca      2340
     ctgctccgaa tcccactagc acagtgcacc cacagagaca gagaggagac agacacctgc      2400
     actctgcaga aatcacagag cagctaagaa taaaacgtcg tctacgaaga gtttggcagc      2460
     taagtcgaaa tccacttgac aagactgctt ttaaccgtgc aagtaaagac ttaaataccc      2520
     tcatatatga actgcgcaat gaagctctag ccgaatacct tcgacacgct gagcctaact      2580
     cgttggagca caatctctgg aacaacacca aatacctcaa gagacctacc aaacggattc      2640
     cagccattat aagttcaacc ggctcttggt gtcgctccaa cgaggaaaaa gcggagactt      2700
     ttgctctaca tctgcaaaga acattcacgt cgtttaactt atgctcagcc acggacgcca      2760
     ccaatacaca aacattcata gagtcgccct gtcaaatgga tctaccgatt cgaacaattc      2820
     atgaagatga agtaaaatgc atagtgtcaa gcttgaaagc agccaaaagt cctggttacg      2880
     atgctatcga tgcaacaaca ataaaatgtc tacctccacg tgcaattgcc tttcttacgg      2940
     tcatctacaa tggtatcatt aggctccatc acttcccctc acaatggaag tgtgcagaga      3000
     tcataatgat accaaaaccc gggaagcccg aacaggatcc tgcctcctac cgtcccatca      3060
     gcctactagc aatactgtcc aaagtattcg aacgaatatt tttggccagg ctattgccgg      3120
     tgctggaaga cggcaactta atcccagagc accaatttgg atttaggagt caacatggaa      3180
     ccccagagca atgccacaga gtctcacaaa cgattttgaa ttcattcgaa gacaggaagt      3240
     actgttctgc cgcgtttcta gacgtaaaac aggcgtttga tcgtgtctgg cacttaggct      3300
     tgctttataa gctcaagtcc atgctaccag ctccattctt cctgctgctc aaatcctatt      3360
     tacataggcg cctattcttt gttagatgcg aatgggctga gtccgaaatc ttcgaagtaa      3420
     aagccggtgt accccaggga agtgtgctag gccccatttt gtacaccctt ttcactgcag      3480
     acattccagt gcttgtaaga gatgatctcg ttgttgcaac ctatgccgac gacacagcat      3540
     gtctagccac ctcaacagac cacgtagaag catcagcaat cctgcaacaa caactctcaa      3600
     aactggaacc atggctacta agatggaata tcgtcgtcaa cgaaagcaag tcagcgcaca      3660
     taacattcgc aacccgccct aaatgctgcc cggaggtcag gctgaatggc accacactgc      3720
     ctgtagtcaa taaagttaaa tatcttggcc taacacttga cagaagacta acctgggcag      3780
     aacacatcaa aaacaaaaaa aaacagctca gtctgaaact tcggcaaatg aagtggctgc      3840
     tgggttacag atctcaactg agccttagaa acaaggtcct gctgtataaa gtgatactta      3900
     agcccatatg gacgtacggg attcagcttt ggggtacagc ctcaacatct aacatcgatg      3960
     tattgcaacg ttttcaaagc ataactctgc gaaggctagc taaagcacca tactacgtaa      4020
     gaaaccaggt catccacaag gaccttgagg ttccaagtgt aaccgaagaa gtcaaaaggt      4080
     acgctttgaa gtatcaggag agactggatc gacactgcaa cccgctggcc gttaacctgc      4140
     ttgacaacag ccaacatcgc cgacgactga aaaggcacca cccccttgat cttccattta      4200
     ggccacccaa ggagtggtag taaacatttc ctcctaaaca tcccctacat gtaaaaaaat      4260
     gaaaaatttt ctgtcatccc ctttgccata gaatttactt attatcttta gatagataga      4320
     ttgtaaataa aataaagaga aaaaaaaaaa aaaaaaaaa                             4359
//
ID   Jockey-10_DBp repbase;    DNA;    INV; 3679 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3679
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 716-716 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           131..1207
FT                 /product="Jockey-10_DBp_1p"
FT                 /translation="MSPRPKKKMQVAKSGQLPNNSNYYSPLQTIKDKDDDN
FT                 EDNGTEHIVEKSNNYVPPITVLKCSIEQIQIICKTLFIEDYSIKKISLGAK
FT                 LHCEAMSDYIKACNFMKGKYEFFSYAIKNEKPYKAILMGLDTDQPEHVKQK
FT                 LVSMGLQCTDVKFVRRKRPNDTTFTFFVVYFVNKSITLSELKKXHSVIDYV
FT                 RVKWDYQRRRSNKITQCYNCQMFGHGSNQCAVKAYCAVCAGNHKTADCNEN
FT                 SCVKCANCHGNHKSSSLECPSRENYIQLRAKGYPRLPRSNPVKSPSLHCPV
FT                 AFPKLSKHTPPPVNPCWPNSQHRQSDELLSLEEIKNLTFELIKQLRNCKSR
FT                 TDQLEVITSLAFKFIS"
FT   CDS           1210..3462
FT                 /product="Jockey-10_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLMDLSIVAWNARGIRNKLNELGHFLYKENIDICLVS
FT                 ETWLTRNVPSKLRNYICYRHDRADIRGGGVAIFVKNNVRHTLLPLPNTSVL
FT                 ETIGIKIINSQGTEVKVYSCYFPGGSSNPTARRLFQADIHNLTSLNGHYIL
FT                 GGDFNCRHGAWGCYRANSWGNLLKRKLDSQNFYIIHPADHTYIPARAQGLS
FT                 STLDLFITNCPQRFSHARAINDLGSDHLPVQITLLNSPAIVESYYFDTKNA
FT                 NWVEYMRLINSQLPTINPSSICLPQDIDEQINIFNNTISGAKIASIPQKRI
FT                 RYSPKPLPRDVTNLIRNRNHYRRNWQRFRHHIDLELFKLHNFLITEALFNL
FT                 RNKAWNTTLSSLDKGSSPFWKLTKVIKKKRIVMPTLVENSTRYNTPEEKAE
FT                 VLAQLFYRNHSLSADLSDPSTTSTVNSSNRALANTPINLTNIPPLTRDQVK
FT                 GVLKSLKIKKAPGVDGIDNLCLRHLPRKGISFLTVLFNKCLQLCYFPNAWK
FT                 KSKVIPIAKQNKPIDLPSSYRPISLLSSVSKILEKIIKERLIQFLEDNACL
FT                 PSFQFGFRREHNTVQPLVRIKKIVNRSFSASQSTGMVLLDIRAAFDSVWHD
FT                 GLIHKMRILNFPPEIIKIVKSFLSNRSFSVHIESATSTIKYIPAGCPQGSC
FT                 LSPILYNIFTADFPVLPGCSMSVFADDTAILSSGRPSSEITXKLTLAFEXT
FT                 NILVNSDKTQAIYFTRKRKNIYXPXGAIXLGNTYVSWEPSVKYLGLVLDKN
FT                 "
XX
SQ   Sequence 3679 BP; 1206 A; 849 C; 657 G; 957 T; 10 other;
     cagtctggtg tgtaagctcc aactgtacgc acgtacgatc gcaagcgcgt cagtgacaat        60
     tttttctttt tcgcacatta gtctaaaccg aatcatcata aagagatcga taagagaagc       120
     cggcgatgct atgtcgccgc gaccgaagaa aaaaatgcaa gtagctaagt ctgggcaact       180
     tcccaacaac agcaactatt actcgccgct tcaaactatt aaagataaag atgatgataa       240
     cgaagacaat ggtacagaac acattgttga aaaatcaaat aattatgtac ctccaataac       300
     ggtgcttaaa tgctccatag agcaaattca aatcatttgc aaaaccttat ttatagaaga       360
     ctactcaatc aaaaaaattt cacttggagc caaacttcac tgtgaagcga tgagtgacta       420
     cataaaagcc tgcaatttta tgaaaggcaa atatgaattt ttttcctatg caattaaaaa       480
     tgaaaagccg tataaagcta ttcttatggg tcttgatact gaccaaccag agcacgtcaa       540
     acagaaacta gttagcatgg gtctgcaatg cacagatgtc aagtttgttc gtaggaaacg       600
     gccaaacgat accaccttta ccttcttcgt agtttatttc gtcaacaagt ccataactct       660
     tagcgagctg aagaaawctc attccgtcat cgactatgtt cgcgtcaagt gggattacca       720
     aaggcgtagg agcaacaaga taacccagtg ctacaactgc caaatgttcg ggcatggatc       780
     aaatcaatgt gctgttaagg cgtactgtgc tgtctgcgca ggaaaccata aaactgctga       840
     ctgcaacgaa aactcatgcg ttaagtgtgc caactgtcat ggaaatcaca agtcgtcctc       900
     gctcgagtgt ccttctcgag agaattacat ccagctaaga gcgaagggct atcctagact       960
     acctagaagt aacccagtta aatctccttc tctgcattgc ccagttgctt ttccaaagct      1020
     gtctaagcat actcctcccc cagtaaatcc gtgctggcct aatagccaac accgacagag      1080
     cgatgagcta ctttctttag aagaaataaa aaatctcacc tttgaattaa ttaagcagct      1140
     tagaaactgt aaatctagaa ccgatcaact agaggtaatt acttctctag cattcaaatt      1200
     catttcttaa tgttaatgga tctatcaatc gtagcgtgga atgctagggg cattcgaaat      1260
     aaactaaatg agttgggcca ctttttatat aaagaaaata ttgacatttg tctagtgtct      1320
     gaaacatggt taaccaggaa tgtgcccagt aaattacgaa attacatatg ctatcgacat      1380
     gatcgagccg atattagagg aggaggggta gcaatctttg ttaagaataa tgtacgccac      1440
     accctgctac ctctccccaa tacatcagta ctagaaacca taggcataaa aataatcaat      1500
     tctcaaggta ctgaggttaa agtgtactcg tgctactttc ctggaggtag ttccaaccct      1560
     actgctagaa gactcttcca ggcggacatt cacaatctaa ctagtttaaa cggtcactac      1620
     atactaggcg gcgacttcaa ttgcaggcac ggtgcgtggg gctgctacag ggctaactca      1680
     tgggggaatt tattgaagcg gaaactagac tcacagaact tctatataat ccacccggcg      1740
     gaccacacct acatcccagc aagagctcaa ggtctctctt caacattaga tctattcatc      1800
     acaaattgcc cgcaacgctt ttcacatgcg cgagcaataa acgatctggg atctgatcac      1860
     ctaccagtcc aaattacgtt acttaattcc ccggcaatag ttgagtcgta ttacttcgat      1920
     actaaaaacg caaattgggt agaatatatg cgccttatca actctcagct accaacaata      1980
     aaccccagct caatctgtct tccccaagac attgacgaac aaatcaacat ctttaataac      2040
     acaatatctg gagctaaaat tgccagcata ccccaaaaaa gaattcgcta ttcacccaag      2100
     ccgcttccta gagatgttac caacttgata aggaatcgga atcattacag acggaactgg      2160
     caaaggttta gacatcatat cgacctagaa ttgtttaagt tacataactt tttgatcaca      2220
     gaagcgttgt tcaaccttag aaataaggct tggaacacaa cactatcatc cttagacaag      2280
     ggctcttctc ccttttggaa actaacaaaa gtcattaaga agaaacgcat agtaatgccc      2340
     acccttgtgg aaaattctac tcgatataac actccggagg aaaaagcaga agtattggcc      2400
     cagttgttct atcgcaacca ctctttgtcc gctgatctta gtgacccwtc aaccacttcc      2460
     actgtaaaca gctctaaccg tgcccttgcg aatacgccta taaatcttac aaacattcca      2520
     ccactaacga gagaccaagt aaaaggtgtc ttaaaatccc taaaaattaa aaaagcgcct      2580
     ggcgtcgatg gaatagacaa cctatgtctt aggcatctac ctcgcaaggg tataagcttt      2640
     cttacagtac tgtttaacaa atgtcttcaa ctctgctact ttccaaatgc atggaagaag      2700
     tcgaaggtaa tccccattgc caaacaaaac aaaccgatag atttaccttc ttcgtatagg      2760
     ccaattagtc tcctttcctc agtaagcaaa atattagaga aaataattaa agagaggctt      2820
     atccagttcc tcgaggataa tgcctgccta ccttcttttc aatttgggtt ccggcgtgag      2880
     cacaatacag tccaacctct tgtaagaatc aaaaaaatcg taaatagaag tttttcagca      2940
     tcccaatcca ccggaatggt actgctagat attcgagctg cttttgattc cgtttggcac      3000
     gatggactga tacataaaat gcgcattcta aacttccccc cagaaatcat taagatagtg      3060
     aagagctttc tttccaatag gtcgttctcg gtacacatag aaagtgcaac gtccactata      3120
     aaatacatcc cagcaggctg cccgcaagga tcctgccttt ctccaatcct gtataacata      3180
     tttacagcag attttccagt cctgcccggc tgttccatgt cggtattcgc tgatgataca      3240
     gctattttaa gctcaggtag gccatcatcg gagatcaccw acaaattaac cctagcgttt      3300
     gaamaaacta acatcctcgt gaactctgat aaaacccagg caatctactt tacaagaaaa      3360
     cggaaaaata tctacawtcc cmatggagca atcawgctag ggaatactta tgttagctgg      3420
     gaacctagcg tcaaatatct aggactagtt ttagacaaaa actgaaattt ggcgaccata      3480
     taaaaaacac cattaaaaag tgaacatcac ggttcgaact mtctacccct tcataaacag      3540
     aaacgcccgc ctgagcttag aaaataaact acttctattt agatcaattt tccaagcaat      3600
     aattttttac ggtgcacctg tctgggcaga tatagcgaaa tgtcatwtaa akaagctcca      3660
     agtgtcccaa aataaaata                                                   3679
//
ID   Jockey-10_DEl repbase;    DNA;    INV; 5305 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome: a
DE   sample fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5305
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (28-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental, single-copied sequence. Termini are indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1795
FT                 /product="Jockey-10_DEl_1p"
FT                 /translation="MNTNTNEAEVKSAHQQKIKLAKQKARNVPYSLKTKPT
FT                 TTNCALNKTVEIPTNPNMDEATTSTSASTSGNPTMEYDETTLKRQRDADCS
FT                 TEDSDDDYTEDSSESEEAEEEEDGETDAPITQNQLASIMEELTLLREENQR
FT                 LKDEATAIKRNFDDNINNNNNKNFPDLEKPCTKPAKKKTTMSSTTPQAKEP
FT                 NKQVKNIPDIVVFNQNPKLLQIALKNVIKPTEFILNIINKNRINVKLFSLD
FT                 HFENVKKLMTERKMRYFSYTPKQLKPHTIILKKLPPSVYEGAEIKKAIAEA
FT                 VPELVILSIQQYKEVLWKITIQKSNQINSIFKIKSLLNCKITFEGYKPHPN
FT                 EIKQCRNCQRFLHVASNCNMPYRCVKCVETHAPGQCKVKKNENDNANELTK
FT                 TQCINCNGEHTANAKICPKRVELLEILKHKRIEAKNKATKIINKILPQNKT
FT                 TQNRSFSSLFNPPSISSPKQNIKTSNPILQQHMSNALKPDQKHTLTFEGIN
FT                 NDSINLLGKSIIQCIEIMQKTILKYPNKEDQNAKKAILLDFILQISQ"
FT   CDS           1738..4893
FT                 /product="Jockey-10_DEl_2p"
FT                 /translation="RRPKRKESYPTRLYSTNIPIITLKVIFLNVNGIRLIR
FT                 KRHELNNFLNTHRPDILLIAEHHLHQNNPALLKNYKLIRQNTGTKRPNMST
FT                 QKPGTSVGICLKNELKYKQILLEPLISIEAVAIQISYKDRLNREKNIIFAS
FT                 LYNRPQDKLHTQDLDDLIKALTQTTNCSDIVIGCDLNAKHPSWNKPDYNPS
FT                 HRNQSGTTLDSWINRNLNLIIHAPLEPTRPNLEQRLDSSIDLFITSSTLPI
FT                 DYQHQNTGCKVIKDFPSDHFSIQIKINLGQTRLIINDNKSIHNFNKINTLL
FT                 WNRSIIKNIRNIPNDTNIYQPEIDAHIQCLTEAINKAIDNPLVIPKIVIKP
FT                 NKPNYSSINLNKQCLKLIKEKRILRRTLFKKSINFTREQIIIIKEAIKEID
FT                 IQIKNHIELTEIKIIGNRLKNIHPSKISYKSIQNINPHNPRKEQFHHHIIL
FT                 NEHEKTNIDMEIDRNSFPILTTSFAKVNALAWSFEQIHKQNQNISSHSPSL
FT                 RLHQFQIESTIEQFISGPHNNLTAFNNQNTADGEWEGSDELGFTNADELLN
FT                 ILKFKNNKKGLGHDNTSNFTLKCFNKPLLKHLSIIFNHCLNCSYFPQHWKH
FT                 CKIIPILKPNTNPNHLRSYRPIAILSAISMLFEKVILKQINRQLKSKHILQ
FT                 TEQYGFREGLSINHALMSANNFIFDNILRRRATIACALDFEKAFDTVWTQG
FT                 LIYKMKNIYRFDPNTSRIIHSYLTNRTFSVYNPNHTENSMTRTIAAGVPQG
FT                 SILAPILYNIYLADMPKYEPSDLNSSTQIRKLIYADDILLLGSGGSVHRTE
FT                 SEMNKFLDTLCRYFTKWHLKLNSNKCVSSIYKGPRTCNLYKSAKKFNPKLY
FT                 IYYNTPIQNKKQLKYLGVIYDEKLNFKEHIDYAIQKATIRLKEIQNIFKPI
FT                 YNDKIIKLRTLTYKKLIQPILLYGFLAWMSLSSTQMEKIRVFERQILRKSI
FT                 GYQRDPNNIKLISNKKLYYEAKTIRIDEMAIKILEKFITLNNIEQREIPYG
FT                 HSPELISVNFIRHLETAGILYNHNKDIILYNRKFQSLNPDDGLVYT"
XX
SQ   Sequence 5305 BP; 2238 A; 1163 C; 652 G; 1252 T; 0 other;
     tagaattcat aaattctcag aatccgaaat ctcagatagt gactgatcaa ttcgcggaat        60
     ttcataattc taagaatctt aaatacagat agtgactgtc cagtgaaaaa atccaatcag       120
     atagtgactg aagaaaaaat aaaaataaat ataatactag atagtgatga acacaaatac       180
     taatgaagca gaagtgaagt cagctcatca gcaaaaaatc aaattagcaa agcaaaaagc       240
     ccgaaatgtg ccttatagtc taaaaaccaa acccactaca accaattgtg ccttaaacaa       300
     aactgtagaa ataccaacaa atccaaatat ggatgaggct actacctcaa catccgcatc       360
     aaccagcggt aatccaacga tggagtatga tgaaactaca ctgaaacgtc aacgcgatgc       420
     cgactgctcc acagaagaca gcgatgacga ctacaccgaa gattcatccg agtctgagga       480
     ggcagaagaa gaagaggatg gggaaaccga tgcccccatc acccaaaatc aactcgccag       540
     cataatggag gaactaaccc tcctccgcga agaaaatcaa cgcctgaagg acgaagccac       600
     agccatcaaa agaaacttcg acgacaacat caacaacaac aacaacaaga acttcccaga       660
     ccttgagaaa ccctgcacaa aaccagcaaa gaagaaaaca acgatgtcat cgacaactcc       720
     acaagctaaa gaaccaaaca agcaagtaaa aaatatacct gatattgtag tctttaatca       780
     aaacccaaaa ctattacaaa tcgccttaaa aaatgttatt aaacctacag aatttatatt       840
     aaacattata aataagaata gaattaatgt aaagttattc tctctagacc attttgaaaa       900
     tgtaaaaaaa ctcatgactg aacgcaaaat gcgttatttc tcttatacac ccaaacaact       960
     caaaccccac actatcatat taaaaaaact ccccccaagc gtttacgaag gagcagaaat      1020
     aaagaaagcc atagctgaag cagtacctga actcgtaata ttatccatcc aacagtacaa      1080
     agaagtcctt tggaaaataa ctatccaaaa gtcaaaccaa atcaactcta tttttaaaat      1140
     aaagagccta ctgaactgta aaataacatt cgaaggctat aaacctcacc ccaacgaaat      1200
     aaaacaatgt cgaaactgtc aacgtttcct acacgttgca tctaactgta acatgcccta      1260
     tagatgtgta aaatgtgttg aaacacatgc accaggacaa tgcaaggtta agaaaaatga      1320
     aaatgataat gccaacgaat taacaaaaac acaatgcatt aattgtaatg gagagcatac      1380
     agcaaacgcc aaaatatgcc ctaaaagggt tgaattacta gaaatattga aacataaaag      1440
     aattgaggca aaaaacaaag ctaccaaaat aataaacaaa atcttacccc agaataaaac      1500
     cacccaaaac agaagcttct cttcactttt caacccacct tccatatcct ctcctaaaca      1560
     gaacataaaa acttcaaacc ctattctaca gcagcacatg agcaacgctc taaaaccaga      1620
     ccaaaagcat actttaacct ttgaaggaat aaacaacgac tccattaatc tactaggaaa      1680
     aagcattatt caatgcatag aaataatgca aaaaaccatc ctaaaatatc caaataaaga      1740
     agaccaaaac gcaaagaaag ctatcctact agactttatt ctacaaatat cccaataatt      1800
     actcttaaag ttatattctt aaatgttaat ggcatcagac ttatccgaaa aaggcatgaa      1860
     cttaataact ttctaaacac tcaccgtcca gatatcctac taattgccga acatcacctc      1920
     caccagaata acccagccct attaaaaaat tacaagctaa taagacaaaa cacaggaaca      1980
     aaacgtccta atatgtctac acaaaaacca ggaacctcag ttggaatatg tttaaaaaac      2040
     gagttaaaat ataaacagat actattggaa ccattaattt ctatcgaagc ggtagctata      2100
     caaatatcat ataaagatag acttaatagg gaaaaaaata taattttcgc ttctctatac      2160
     aaccgtccac aagataaact ccacacacaa gatctagatg accttataaa agctttaact      2220
     caaaccacaa actgctccga cattgtcatc gggtgtgatc tcaatgccaa gcatccgtct      2280
     tggaataaac ccgactataa tccaagtcac agaaatcaat ctggaacaac actagatagc      2340
     tggattaaca gaaacctaaa tctaatcatc cacgcacctc tcgaaccaac ccgaccaaac      2400
     ctagaacaac gattagattc atccatagac ctttttataa cctcttccac tctccccata      2460
     gactatcaac accaaaacac tggctgcaaa gtaattaaag actttccttc agaccacttt      2520
     tcaatccaaa ttaaaataaa cttgggacaa actcgtctca taataaacga caacaaatca      2580
     attcataatt tcaacaaaat caatacacta ctctggaaca gatctataat aaaaaacata      2640
     agaaacatac ctaacgatac aaacatatat caacccgaaa tagacgccca tattcaatgc      2700
     ctaactgagg ccataaacaa agcaatagat aatccactag tcatcccaaa aatagtcata      2760
     aaaccaaaca aacctaacta ctcttcaata aatttaaaca agcaatgctt aaaacttata      2820
     aaagaaaagc gcatcttgag acgcacatta ttcaaaaaat caattaactt caccagagaa      2880
     caaattatta ttataaaaga agcaatcaaa gaaatagata tacaaataaa aaaccacata      2940
     gaactaaccg aaattaaaat catcggcaat agacttaaaa acatccatcc tagcaaaatt      3000
     agctacaaat ctatacaaaa cataaatcca cataatccaa gaaaagaaca atttcaccac      3060
     catatcatac ttaatgaaca cgaaaaaacc aacatagaca tggaaataga cagaaacagc      3120
     tttccaatac tcactaccag ctttgctaaa gtcaatgccc tcgcttggtc attcgaacaa      3180
     attcacaagc aaaaccaaaa tatatcctca cacagtccat cccttagact acatcaattc      3240
     caaatagaat caacaataga acaatttata tctggacccc ataataattt aacggccttc      3300
     aacaaccaaa acaccgcaga tggtgaatgg gaaggctcag atgaacttgg attcactaat      3360
     gcagatgaac ttctcaacat cctcaaattc aaaaataaca aaaaaggtct tggtcatgat      3420
     aacaccagca actttaccct aaaatgtttc aacaaaccat tactcaaaca cctcagtatt      3480
     atcttcaacc actgccttaa ttgctcatac tttccgcaac attggaaaca ctgtaaaatc      3540
     atcccaatat taaaaccaaa tacaaaccct aatcacttgc gcagctatag acccattgct      3600
     attctttccg caatcagcat gctttttgaa aaagttattt taaaacaaat caatagacaa      3660
     ctaaaatcaa aacacatcct acaaacagaa caatacggat tccgggaagg attgtctatt      3720
     aaccatgcac taatgtctgc caacaatttt atatttgaca acatactacg tagacgtgcc      3780
     actatagcct gcgcccttga ttttgaaaaa gcttttgata cagtatggac acagggccta      3840
     atatacaaaa tgaaaaacat ctatagattt gatcccaaca cctctagaat aatacacagt      3900
     tacctcacaa acagaacttt tagtgtttac aacccaaatc acaccgaaaa ctctatgacc      3960
     aggactatag cggccggagt accccaaggc tctattctag ctcccatatt gtataatatt      4020
     tacttggcag acatgccaaa atatgagccc tcagatctga actcatcaac tcagatacga      4080
     aaactcattt atgctgacga tattttactt ctaggttccg gtggatccgt acacagaact      4140
     gaatctgaaa tgaataagtt tttagacaca ctttgtagat attttacaaa gtggcacctt      4200
     aaattaaata gtaacaaatg cgtgagcagc atttataaag ggccaagaac atgtaacctc      4260
     tataagagtg ccaaaaaatt taaccctaaa ctatatattt attataacac ccctatacaa      4320
     aataaaaaac aattaaagta cctaggggtt atatatgatg aaaaacttaa cttcaaagag      4380
     cacatcgact acgccataca aaaagcaacg ataagactaa aagaaataca aaatattttt      4440
     aaaccaatat ataatgataa aataatcaaa ttacgaacat taacatataa aaaacttatt      4500
     caacccattt tactatacgg atttttagcc tggatgagtc tgagctccac ccaaatggaa      4560
     aaaataagag tctttgaaag acagatacta cgtaaatcaa taggctatca aagagaccct      4620
     aataacatta aactcatatc caataaaaaa ttatactatg aagccaaaac aataagaata      4680
     gatgaaatgg caattaaaat actggaaaaa ttcatcactc ttaacaacat agaacaacga      4740
     gaaataccat atgggcattc cccagaacta atctcagtta acttcatccg acatctagaa      4800
     acggcaggaa ttctatacaa ccataacaaa gacataatat tatacaatag aaagtttcag      4860
     tcactcaacc cagacgacgg tttagtctat acctagtata cctaactaaa gccactgtaa      4920
     tatataataa atatataata aataatatgt atcctatata ttaaactacc ctcccctgta      4980
     aatataaccc ataatattaa tgtaaatagc ccccttagtt ttaagataga aacaacacaa      5040
     aacaatatga tctcaggttt ttattctaag aatctttttc ctgaaaatac aaaacttaca      5100
     aacttgaaaa acaaaacata aattagtaca aatgtacaaa catacttata agaaaaacta      5160
     atgccccgaa aagcggaaag cgcagggctc aaacaaatgt aatgtaaaag aaacagtaaa      5220
     catgaatttt gtcaaccatg tcttactttc taggatagat ttaatgtata tatcttaacc      5280
     acctaacttg acaataaact atata                                            5305
//
ID   Jockey-10_DEu repbase;    DNA;    INV; 1244 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1244
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 956-956 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1244 BP; 443 A; 264 C; 209 G; 328 T; 0 other;
     aattttataa ggtcagctaa gggataaaca agctagagtg tgcaagcttt cagcccaact        60
     atttttgaaa cactgtgtga aacaatgcgc tgacaggtaa tcaattttct attcttattg       120
     atccaaaaga tgatgacaat aactgatcaa attggagcaa acgagttcta ttcaaagtcc       180
     ataaaagcgg gtaacatcaa cgagacaaaa atacaagtga acgaccagca agattactga       240
     tcagtagcca aacacctcga taaaggaaaa ataaactact acacctacca acttaaaagt       300
     tgctaaggat tacaagtagt tatcaaagct attgaagcaa cagtccctat ctataagatt       360
     atagctgaac ttaaaaaaaa tggctttaac gtcaaacagg ttaggaatat attaaataaa       420
     aacaaagttc ctcagctaat gttcaaagta gaaatggagc cggaatgtat gcacttataa       480
     aacaatgaag ttcacccatt ctataagatt caatatctat tgcaccgtag gatcaacgtt       540
     gaggaaccac ataagcggaa tgggcctgtg caatgcatga attgtcagga atacggccac       600
     acataaactt attgaacttc cttaaaaata tgtttccgga aacacgagca ctcacagttg       660
     ctagatcagt atgacattga caccatactt atctcagaca ctcacctaac aaacaaaaaa       720
     tatttttacc ttaatggcta gacatttaat gaaactaacc atactcatgg cggtactggt       780
     atactgatca agaaacgcat caggcactat gagctgtcat catttgcaac agcctctatt       840
     caagctacat aaatatacat caataccaaa atcggtttcg taaacttatc cgctgtatac       900
     tttccctcac gctgttccat tccgaagatg aatttgttca gttctttgac ctattaggtg       960
     accgttttgt agcggctgtt gattgcaatg caaaacacac ccactggggc tttcaactta      1020
     ccaaccccaa aggaagacag ctggacaacg ctataataac accaagaaaa aagcttggtc      1080
     ttatctttcc tggcaagcct actgattggc caacaattcc taataagaag cctaacttga      1140
     ttgatttttc cgtgacaaga agagcgctag agatcatgtt cacgtggaac acctaacaga      1200
     tctgtcatca gatcacacgc caattttact tcatctctac gatc                       1244
//
ID   Jockey-10_DF repbase;    DNA;    INV; 4469 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4469
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 978-978 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4469 BP; 1405 A; 1035 C; 928 G; 1082 T; 19 other;
     tgctctcgaa agagctgwcc ggattcgaga aaatgaagga agtcgctggc caatctccag        60
     cggaacttcg agctatgctc tccggagatt tgtctcgacg gcatttagac agcctaccgc       120
     aactaaacgt ggatgctttt aaaaccagcc cagcaacacc cgtwaccaac accgttactg       180
     ctacaagtgc cagttctggc actaccacgt amaccgttgc agcctcgcca cgtatctcta       240
     cagcagaaat gaatttggga attcaattct caaagstacc cgctgtggag tgctcatttc       300
     aagcaccaag tgcttctcta cgcaggaaac ggaacccttc aaactgcagt aaggagccag       360
     ctgacataaa gaaaagcaaa gctaatgcca acaaagttgc tgattcaagt caggcttcga       420
     catccaacgg actgcgcaac aaccgcttcg caccgctagc tgaggaaaat actgaggaaa       480
     tggagacaaw tggggagatg ttcgatctca atagccaagc gcaaggttca agcaaaccgg       540
     atctgatgaa gcctaaaccc ccgcccwtat gtgttccaaa ggttactaat attctcactc       600
     tagaaggaac cttaaataat atcatctctg cagacaaata cgagatacgt acttctaaat       660
     tcggaattac tcgtacatac actgacagcg cgggctcttt ccgcaaggta gttcgcagcc       720
     tgactgcgtt gaattgcgag ttttggcatc atcaactccg cgaggacaag ccatttaagc       780
     tggtgctaag gaacatacac tccactgtcc ctaaggagga aatagagcgt tgtttcacgg       840
     acaaaggttt caacgttgca aatatttact gcccaaaaaa gcctggcatg cgcgggacta       900
     tatccgaaat aaataatgat gataggcaaa atttattcta tgtaaatctc aagatgacgc       960
     cgaatgtcgc ccagtcgtta aaaattaagc aaattggaag gcaccgagtt actgtggaaa      1020
     aggctactcg caaaaaggac atcgtccagt gttacaaatg ccaaaatttt ggacacactc      1080
     aaattgttgt ttcataaaac ctgtttgtgg gaattgtgct ggagatcatc ttaccaactc      1140
     cgaatcgtgt gagtcgcatc tcaataacaa atgcttgtgt gcaaactgtg gagaaaatca      1200
     ccctgcaggt tttatgggct gcaaagttag aatggaactg agcaaaaagt taaagctgga      1260
     gtagtctaag aaacacaaca aataactgga ggaacgaaag ccgacacgat caactattct      1320
     ccacgtcagc taccagagat ggcgtatctt atgcagatat ggcaagaaat agcctcccaa      1380
     acaatagcag cgctgcagct aggcagtctt ttgagcatgt agttggaaac gacgacatcc      1440
     caagccgaaa tttatctacc ttggagaagg caatctctga tataaacgct aggctggatc      1500
     aactcttcaa gctagtcatg gaaacgattg agtcgaacaa ggcttttcgc gatttagttc      1560
     aggttcttat tcctaggaaa tgacagtccc agttataaaa atcggattat ggaatgcaag      1620
     aggaatagtt aacaaaagcg aagaacttcg acttttcctt attgacaact ctatagacat      1680
     aatgctcatt actgagactc atatgcgtcc cggtctaaaa atgtaccttc ctggttacga      1740
     ccagtacttt gccaatcacc ctagcaacac tgctaaaggt ggttctgcta tttttatcaa      1800
     gacaaacatt atacacactc agaccgagtc cacaacgcga gctgagttac agctaactag      1860
     tcttgatatt ccaacaaatg gaggagtcct taaaatagcg tcattgtatc tacctcctag      1920
     cgagccctgg acaaagaacg attttgaccg gttattagca tctctgggcc cgaaattctt      1980
     ggctggaggc gattttaacg ccaagcatca atggtggggc aacttaaggt cttgctgtcg      2040
     gggaaagcgt cttcaagagg ccatagtttc tagctctagc caaattctag ctactggagg      2100
     acctaccttc tattcttcga atactagact tacgccaaca gctctagact ttttcatcgt      2160
     aaatggagta caactcacag actctcgatc gaaaccaata cgagttatcc tcagaccact      2220
     taccaattgt tgcaacgctt accaaacacc tcagtacaag gccataagga aatctctact      2280
     accgcccggc tcctctgttg aaaagtttaa cgaaaccctg gacagaagca taaatctcaa      2340
     cactgtgatc aaccatccag atgatcttga agatgcggta acggctttta tggaacaaat      2400
     atacactgct gcgacagctg ctaccccaaa cgtaagacaa catccgaatc aaaatagaag      2460
     caatttgctc ccgcaaaatg ctttagttct tatacagcta aaaagaagag ttcgccgaga      2520
     atacacagaa caggagatgt gcgcgtctac aacattacaa aaggcttcca atcgcctaag      2580
     taaggtcttg aaaaagaaca agcaagcatg accatatgtt ggaaaatgcg ggtccagatg      2640
     catcaaccaa ctactcgcta tggaagctga cgaaccgatt caagaggcat gttaccccaa      2700
     aggctcctat aagaaatccc gctggtggtt ggtgtgggtc cagtcagcag aaggctgata      2760
     tctttgctga caatttagag agcagattta agccgtttaa cctaactact atggaaaatc      2820
     gaatgcttgt gcaaatgcga ctggataggc cttttcaaat ggctcttccc acaaggcctg      2880
     ttaccctaca agaagttgtg acgcagatcg gaaagctcaa aaataaaaaa gccccaggcg      2940
     aggaccgtat agacaacaaa acgctaaaga tcctttccac caaagctctg ctttttatag      3000
     tcctgttgtt caacagagtc ttaaagctga gtcattaccc aaggacatgg aagagtgcta      3060
     ttatcacgat gatccccaag cctggaaagc cacccaccga agttgatgca tacaggccaa      3120
     taagtctttt acctgcattg ggcaaaatga tggaaagagt aatactggat cggatcctta      3180
     gacttgaaaa tgtgagtaga gctattccaa agtggcagtt tggttttcga aaaagtcacg      3240
     gcacccctga acagcttcat cgcgtggtca atttcgctct ggaagccatg gaaagcaaaa      3300
     tgtacacagt tgctgtgttt atggatatcc aacaagcctt tgatagagta tggcacgacg      3360
     gcctcctaag caagctaaag accctactaa caccacagct tttcctcctt attcagagct      3420
     tcctttcgga taggacattc agtgttgttg tcgaaggcga aaagtcgtca aaacgcccaa      3480
     tctcagctgg tgtaccwcag ggcagtgtac taggccckac actttactcg ctgtatacgt      3540
     cagatatgcc agattcctgg ggatgtaccg aagttgacga tgatgacata ctcatcgcaa      3600
     catacgccga cgacacagcg gttatggtca ggagtccaag tatagacatt gcaaccttgg      3660
     gcttgcagga gtacgtatca cgttttgaaa aatggacaac tgattggaac ataggcataa      3720
     actgcaacaa atgtgcttgt gtcacatttt ccacaaggcc aaagaactgc ccaggcattt      3780
     caatgctcgg ttctgtactt cgtcacgagc actactacaa gtaccttggt gtgattttgg      3840
     atagagggct cactttccag aggcacacca caatgatcaa gcaggcagtg ctctcaaagg      3900
     cagcaagcat gtcctggcta cttkcgtcaa awaataagct ctccttgtcg aacaaagttc      3960
     gcatwtataa atcgattctc agtccaatct ggaaatatgs attacaagta tatggcatag      4020
     cgtctaagtc gaacctaaac aaaatmcgaa tagcgcaaag caagatwgtg agatcgattt      4080
     gcaatgcccc ctggttcatg agaacsagag atatmgaaag agatctcaaa atcccwaaga      4140
     ttggcgatgt ttgtcgmaca catgctgaaa gctacttcag acgccttggc tctcatccta      4200
     actccctggc gaagaggcta attaggagac caagaagaag aagacttaaa aggttccacc      4260
     cacatgacct tccattaaga cacatttaac acmcttgaag actgatataa ttaaactaca      4320
     cacgaataga tttaatgtat aatctgtgta ccaacccttt gttatcccct atagttacaa      4380
     cctgctcaag ctgccacata ggtagcagta tacccgttaa ttaataaatt tacacttttt      4440
     acttttttac taaaaaaaaa aaaaaaaaa                                        4469
//
ID   Jockey-10_DRh repbase;    DNA;    INV; 4695 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4695
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1687-1687 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96.6% identical to consensus. The consensus is ~95.1% identical
CC   to that of Jockey-2_DEl.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1886
FT                 /product="Jockey-10_DRh_1p"
FT                 /translation="MSKNVDQRTQRQKQQDEAREKFQREQDKRRLSLARNN
FT                 AYFTVTSNTLEPKVLEGASLLTAENQRASSCSPALLFTAQTPWSEQCKTPT
FT                 ELLPPSATTTATTTTTTTVSVANNAITTPPSSCAAGKATTQPSAKIGANGK
FT                 NKATVEEVTILQAGSAMQTGMDRYINISKRKLTPPKNSDGNKPKINRSNKG
FT                 PENPGPLDENRFSILAEPETESEQLAPRKLKPPPIFIREKISNALVNKIVE
FT                 LVGKDNFHVIPLMKGNISETKLQTKTEDDFRAVSKYLNDAKKNYYTYQLKS
FT                 CKGLQVVLKGIEPDVTPSEITEALKENGFCAKNVINIMNKNKKPQPLFKVE
FT                 LEPDSRTLKKNAVHPIYKLQYLLHRRITVEEPHKRTGPVQCTNCQEYGHTR
FT                 AYCTLRSVCVACGNCHGSEPCPANKEDSLTKKCVNCQGNHTANYRGCPVYK
FT                 MMKSRMQRATTARSLNTQNTYMRSQTTPEVFFAKAARSSFGPSITTNGMSY
FT                 ASALRSGTAHIEPKIDNIQQAMGQPQSNMESMMITLQQNMMEFMSFMKTTM
FT                 QTLMQNQNILLQMLAAQQSK"
FT   CDS           1893..4556
FT                 /product="Jockey-10_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPSLRITLWNANGVSRHKPEITQFLNENHIDVMLLAE
FT                 THLTSKYNFKIRGYTFYGTDHPDGKAHGGTGILIRDRVKHHFHQRFAKNHL
FT                 QATSIKLQLGNCNLAIAAVYCPPRFTVSEDQFMDFYNSLGERFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNALIKTCNKLDYVSPDSPTYWPTDPRKLPDLID
FT                 FAVTKNISRNLISAKSLLDLSSDHSPVLITLLQSPELIEHPRRLTSHRTNW
FT                 LKFKKYVSSHIELTPQLNIKEDIDCYADALESVLVAAAKVSTPQGWDGHTH
FT                 QHKTNLEIEQLVLEKRRLRRAWQTSRSPSSKQSLKEAGRRLTRALRQEEVK
FT                 AQRQYIVKLSPTSTKHPLWRAHPNLSAPAETVIPIRDSSGSWARSDKDRAC
FT                 TFALHLRNVFQPNPATNSFALPSPSIRIESETEPILFQPNEVAKVISEQLK
FT                 PKKAPGGDQITPKMLIELPNCAVEVICKLFNGITRLGYFPKKWKKSVIIMI
FT                 PKPGKDHTIPASYRPISLLSCLSKLLEKCLLTRIIPYLKEHNVIPAHQFGF
FT                 RESHGTIEQVNRLTTEIRTAFELREYCSAVFLDVAQAFDRVWLDGLMHKIR
FT                 TILPGNTHRILESYLYNRAFAVRCNTTTSDDYAIEAGVPQGSALGPTLFLL
FT                 YTADIPTNERLTTSTFADDTAIISRSKCPIQATALLADHLVVVERWLSDWR
FT                 IKINAQKCKHITFTLNRQTCPPLTLNNTPLPQADDVTYLGIHLDRRLTWRR
FT                 HIEAKKIHLKLKSNSLHWLINARSPLCLDFKVLLYNSTLKPVWTYGSQLWG
FT                 NASSSNIDIIQRAQSKILRTITGAPWYVRNDNIHRDLGILPVKDEISKQKA
FT                 SYHTKLTSHPNQLARGLARVSNRTRLQRNDLPAQQ"
XX
SQ   Sequence 4695 BP; 1555 A; 1211 C; 915 G; 1013 T; 1 other;
     caatcaactt cggctgcgtg cagacgtgtt ttmttaacgc tccggaaaaa caactagtca        60
     atcagtcgaa aacgttcgaa aaattaataa acgcgaggtt ttgcgtttcg cgatgcaaat       120
     cgcatatcgt aatctaaagt tttaattaat taaataatta atctttacgc actaacgata       180
     aacaaatgag taagaacgtg gatcagcgca ctcaacgaca aaaacaacaa gacgaagccc       240
     gtgaaaaatt tcagagagag caagacaaac gtcgtctttc tttggcccgt aacaatgctt       300
     attttacggt gacgagtaat actctagaac cgaaagtgct tgaaggtgca agtttactga       360
     ccgccgaaaa ccagagagct agctcttgct ctcccgccct gctctttacc gctcaaacgc       420
     catggagtga gcaatgcaag actccaacag agcttctgcc gcctagcgca acaacaacag       480
     caactactac gactactaca acggtctctg tcgccaacaa tgcaataacg actccaccct       540
     cttcttgtgc tgcaggtaaa gcaacaacac aaccaagtgc aaaaatcggt gcaaacggca       600
     aaaacaaagc tacggtagaa gaagtgacaa ttctgcaagc gggttcggcc atgcagacag       660
     gcatggatcg ctacattaat atctccaagc gcaagctaac acccccaaaa aactcggacg       720
     gcaataagcc aaaaataaat cgttccaaca aaggccctga aaatcccggg ccattagatg       780
     aaaatagatt ttccattctg gcggagcctg aaacagagtc ggaacaatta gccccaagga       840
     aactaaagcc cccacctatt tttattcggg agaagatctc gaatgcccta gtcaacaaaa       900
     tagttgagct tgtcggaaaa gataactttc atgttattcc gcttatgaaa gggaatataa       960
     gcgaaactaa actccaaacc aaaaccgaag acgatttccg agcagtgtcg aagtacttaa      1020
     acgatgccaa aaagaattac tacacgtacc agctgaaaag ttgcaaaggt ttgcaagttg      1080
     tgctcaaggg aatagaaccc gatgtgaccc cctccgaaat tacagaggcc ttaaaagaaa      1140
     acggtttttg cgcaaaaaat gttataaaca ttatgaacaa aaacaagaag ccgcaaccac      1200
     tcttcaaggt cgagctggag ccagacagca gaactttgaa aaaaaacgca gtgcacccga      1260
     tctacaagtt gcagtacctt ctgcaccgta ggatcacagt ggaagagccg cacaaacgga      1320
     ccgggccagt gcaatgcaca aattgccagg aatacggtca taccagggct tactgcaccc      1380
     tcaggtcagt atgtgtagct tgtggaaact gccacggctc cgaaccctgc cctgccaaca      1440
     aggaagactc tctcactaaa aagtgtgtaa actgccaagg aaaccacacc gcaaactaca      1500
     gaggctgtcc agtctacaag atgatgaaaa gtcggatgca acgagcgaca acggcacgct      1560
     ccctgaacac acaaaacact tacatgagat cacaaacgac accggaagtt ttcttcgcaa      1620
     aagcagccag atcatcattt ggcccttcaa ttaccaccaa cggaatgtct tacgccagtg      1680
     ctttaagatc aggcacagct cacatagagc cgaaaattga taacatccag caggccatgg      1740
     gacagccaca aagtaacatg gaatctatga tgattacttt gcaacaaaat atgatggaat      1800
     ttatgtcctt catgaaaacc accatgcaaa cccttatgca aaaccaaaat atcttgttac      1860
     aaatgcttgc agctcagcag tccaaataaa ccatgcctag ccttcgaata actctgtgga      1920
     acgccaacgg tgtttcacgg cataaacctg aaataactca atttctgaac gaaaaccaca      1980
     tcgacgttat gttgctggca gaaacgcatc tcaccagcaa atataacttt aaaatacggg      2040
     gatacacgtt ctacggcacc gatcatccag atggtaaagc gcatggcgga actggcatct      2100
     taataagaga ccgcgtcaaa caccactttc accaacggtt tgcaaaaaat catctgcaag      2160
     ctacttcgat aaaattacag ttgggcaact gcaaccttgc cattgccgct gtctactgcc      2220
     caccccgctt tacagtctcc gaagaccaat tcatggactt ctacaattca cttggtgagc      2280
     gattcatagc agcaggagat tacaacgcca agcacacgca ctggggatcc cgccttgtga      2340
     cccccaaagg aaggcaacta tataatgcac tcattaaaac atgcaacaaa ctggactacg      2400
     tttcaccaga cagccctaca tactggccta cagatcctag aaaactacct gatttaattg      2460
     attttgctgt gacaaaaaac atttctcgca atctaatatc agcaaaatcg cttttggatc      2520
     tatcatcgga ccactcacct gtgctaataa ctcttcttca aagcccggaa ttaatcgagc      2580
     accctcgcag gctgacgtcg catagaacca actggctgaa gttcaaaaag tacgtaagtt      2640
     cccacattga actaactcca cagctcaaca tcaaggagga catcgactgc tatgccgatg      2700
     cactggagtc tgtactcgtc gcagcagcca aagtctcaac accgcaaggg tgggacgggc      2760
     acacacacca acacaaaact aaccttgaaa tcgaacagct tgttctggag aaaagacgtt      2820
     tgagacgtgc ttggcaaacc agcagatcgc catcctccaa acaaagtctt aaggaagctg      2880
     gtcgcagact gaccagggct ctaaggcaag aagaagtaaa agcacaacgc cagtacattg      2940
     tgaaactttc acccaccagc actaagcatc ccttgtggag ggcccaccca aatctaagtg      3000
     cgccggccga aacagtaatt cccataagag actcttcagg cagctgggcc agaagcgaca      3060
     aagacagagc ttgtacattt gctttacacc ttcgaaatgt tttccagcca aaccctgcaa      3120
     ctaattcatt cgcactaccg tcgccgtcaa ttcgaatcga atctgagacg gagccaattc      3180
     tgtttcaacc aaatgaagtt gcaaaagtaa tcagcgagca attgaaacca aaaaaggccc      3240
     caggcggtga tcaaataact cccaaaatgt taatcgaact tccaaactgt gcagttgagg      3300
     ttatttgtaa actctttaac gggattacac gacttggcta ttttccaaaa aaatggaaaa      3360
     aatcggtaat cataatgatc ccaaagccag gaaaagatca cacaatacca gcttcgtaca      3420
     gaccgataag tttactctcg tgtctgtcaa aactgctcga aaaatgcctt ttgacgcgca      3480
     taatcccata tctgaaagag cacaacgtta ttccagcaca ccaatttggc tttcgagaaa      3540
     gccatggaac aatagagcaa gtcaacagac taacaacaga aatacggact gcattcgagc      3600
     ttcgggaata ctgcagtgcg gtattccttg acgttgcaca ggctttcgac cgagtctggc      3660
     ttgatggcct tatgcataaa atcagaacga tcctgccggg aaacactcac aggatacttg      3720
     aatcgtacct ttacaacaga gccttcgccg tgagatgcaa cactacaaca tccgacgact      3780
     acgctataga ggctggagtt ccccaaggta gcgcccttgg tccaactcta tttctcctct      3840
     acaccgcaga tatccccacg aacgagcggc taactacttc tacattcgca gacgataccg      3900
     cgatcataag tcggtccaaa tgcccaattc aggcaacagc actactagct gatcatctcg      3960
     ttgtagtgga gaggtggtta tcagactggc gtataaaaat aaatgcgcaa aagtgtaaac      4020
     acataacgtt tactcttaac agacaaacgt gtcccccgct aaccctgaat aacacgccac      4080
     ttccacaagc tgacgatgta acgtaccttg gcatccacct agacaggaga cttacatggc      4140
     ggagacatat cgaagctaag aaaattcacc taaaactaaa atcaaacagt ctccattggc      4200
     ttataaacgc gcgctccccc ctctgcctgg acttcaaggt cctgctctac aattcaacgc      4260
     ttaagccagt ctggacctac ggctcccaat tgtggggaaa cgcgagcagc agcaacatcg      4320
     acattattca gcgagcacaa tcaaaaatcc tgagaactat cactggggca ccttggtatg      4380
     ttcggaacga caacatccac agagatcttg gcattctacc cgtaaaagat gaaatatcaa      4440
     aacaaaaagc gtcctaccac accaagctaa cttctcatcc aaaccagctc gccaggggcc      4500
     tagccagggt ttccaaccgg acccgattgc aacgcaatga ccttccagct cagcaatagt      4560
     tattagagcc cctaaattct cgcgccagtc accttgactg tcagatagtt ttttaattta      4620
     agattctata tacttattgt tagtctcaat tcagagaaga tccaataaat aaaatgcaaa      4680
     tgttaaaaaa aaaaa                                                       4695
//
ID   Jockey-10_DTa repbase;    DNA;    INV; 7632 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.11, Created)
DT   25-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-7632
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Both termini are indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           1081..1983
FT                 /product="Jockey-10_DTa_1p"
FT                 /translation="MFQLPRIQTYHKLLSIYPSKMKCAGNHKSMHCNKPRS
FT                 SPPTCSNCSGIHVSSYRGCPAFKKAKNALITNKININEIRGTLNSAARADP
FT                 PQQRKTHKLLYSEAVKSHANSHRRSEISLQKSPLLNSGANWHNPFKVSKQT
FT                 GSIPPPRSSSHISAIHKRLNRMRKNSAVSAPKSMPHKVKENPKKPLQRQPF
FT                 KQGKDSERNLQGTRKTGDSPPTTSRAARANFKPRIIPQISSSETGNGRQSP
FT                 VSRKEILSEPGLVTRVEMIEKKIDLLMENFSKLFRTQGTEIPLGKSISTIS
FT                 PNEHQAIFV"
FT   CDS           2021..5320
FT                 /product="Jockey-10_DTa_2p"
FT                 /translation="MNINQLNCPNGNTLKLGYWNAGGIGRKRDELEVFMDR
FT                 EGIQIMMVIETKVKKKPQVLDFPGFYTYHAHNPSRNSKGGTAILVRHNIRH
FT                 SALEPVETESCQSSPIVILPSSGCRADMIIIAPIYCPPTFTWLPTHFDRLF
FT                 KHFDDLLGGRSKFIINGDWNAKHRSWGNYQSCVRGRNLHEALCSRRDLEIL
FT                 ATGQATHFPFDKRKQPSAIDFSVFKGLRRSNLKISSSPDLSSDHLPLSILI
FT                 NFNAQNSFCSTSNHKPTISKATNLSKFKKLLDEKILLNTEIHSGDDIEDCV
FT                 GIFLKNINESAKDATPLFRPQNGSNNRRHSRKNFITLDENTARLLDEKREL
FT                 NRIFRSTGTEEAKIWFKHAQNKLAREIKKLREKNINEMVKDIDTNDRYKMQ
FT                 KLWKITNNVKKETQPCWSIKREVNPNSPVYSNPWTRTLNEKAEAFVHHLEG
FT                 RFKPNLKNEESDRMETRMELEGLQKGLSAEKSTHIRPVTLEELNLLIDSLE
FT                 KNKAPGQDKVDNRLIKQLTKNARLYLLLIFNGILRTGHFPSAWKHAQITMI
FT                 LKPGKSPSCVKSYRPISLLAGFSKMFEKVLLTRLYEVELFVKAIPNYQFGF
FT                 KKEHGAEQQLERVTNFILQAYEDKEVCSATFVDITEAFDRVWHEGLLVKLA
FT                 KLVPTRLFIILKNYLMDRTFTVKVTSEVISRKGKIMAGVPQGSILGPILYS
FT                 IYTSDMPMPVKPRSSRYFPSYFSKNVMIATYADDTILIGRASTGNAAVNLC
FT                 QTYITEFCKWAKRWDISINGKKTGHVLFSLKGNLESGHSPPIVDGQRATKS
FT                 TKQKYLGILLDKKLSLGLHVLQLKQKLTGAYNKLEWLLGRRSKMPNNTKAL
FT                 LFKQIISPIWHYSIAVWGSIVSNTNAGKIQGIENRLIRKSINAYRYTRQAA
FT                 IRDKFNIKSLPEVYNQACQRLVGSVESHTNPLIRDLLINPYIPKRLAPSRP
FT                 RYLERYRKFFLTKHQALPKRPKEPIYDFIYGYTEEEENKICSTLRQLYRDS
FT                 LPTLLRLQDELDEVKEKEECLRKKIEKRKAIKENPPSRWGESKINNFNKLY
FT                 REGRVSREYLIEIMEGQPIGIIRIIIPDFKLHLSNQTIFYLTD"
XX
SQ   Sequence 7632 BP; 2389 A; 1751 C; 1605 G; 1887 T; 0 other;
     aaacctccct gctggcgagg cctacactgg ggaaaatggg aagccatctc tcgctgctcc        60
     aaaatcttaa aaatggctcc gtagtagacc cagccactct aactcaagct ttattaaatc       120
     aatttttagt cactaataaa accaaactac gcaaaaacta actttgacta acaactataa       180
     tactaaaccc gcagccatct gaaagtgcgg aaaatccctc tcctgatctt ccctctaccc       240
     cacaagccaa aaacaagata ttcccactca aacacgcaat aaaagcacag caaggcgtag       300
     cttgtttgaa gctaaaactc ctggcaaaag gcgtattgag aaggaagaag cccccgtaag       360
     ggtgaaactc ctgtaaaaac acagaaattc agcagctctg ttgggggtag attttcctca       420
     tgaaaacatt gctcatacag tccccagtat tctgtagtct tagccgcaaa aatgatagct       480
     gcagagcact ctggaagaaa ctccttagaa gcagaaactg aaccactgga gatgatctag       540
     aagcccccac agctagatga agatgttggc ctcccccctt ggcaaatggt tccgttttcc       600
     aaaaagtacc atcaatttat ataaacaaaa tacccgactt aatcccccct tactggaaaa       660
     aaaaattaaa ttacagggta ggagtctcaa gctacagtac gaaaacgaca attgggggaa       720
     ggattaggct tcaggctaag aatatggagg tatataacat tataaagcag atcctcagcg       780
     aaactggtac tgtgaccttt cgcaccaacc aaagctgata ggggtttaag agttgtaata       840
     aggcacctgc atccatccac cccaggcgct tggatagttg gagaactaca aagttcctgg       900
     gtttccaaac gacgtatttg cgaaacccaa acatttctca acaggccagc ccatgaaaat       960
     tttcgaagct gaaattagta cgagagggag cggtgaacac ttaaaaatcc ttgccttaaa      1020
     gctactgggg gggcaaagga tagaggttga aagaaaaaac aaatctaagg acccagtaca      1080
     atgtttcaac tgccaaggat tcagacatac cacaaattac tgtcaatata tccctctaag      1140
     atgaaatgcg ccggcaacca caagtcaatg cactgcaata agccgcgatc aagcccacca      1200
     acctgttcaa actgctccgg catccacgtc agctcttaca gaggttgccc ggctttcaaa      1260
     aaagccaaaa acgccttaat taccaataaa atcaatataa atgaaattag aggaacatta      1320
     aactcagctg ccagggcaga ccctcctcag caaagaaaaa cacacaaact tttatatagt      1380
     gaagcagtta agagtcacgc taactctcac aggaggagtg agatttccct gcaaaaatca      1440
     ccacttctta actcaggagc aaattggcac aacccattca aagtttccaa acaaactggg      1500
     tcaatccctc cccctcgatc ttcctcacac atatcagcca tacataaaag gctaaaccgt      1560
     atgaggaaaa actctgcagt ttccgccccc aaaagtatgc cacataaagt taaagaaaac      1620
     cccaaaaaac ctctccaaag gcagcctttt aaacaaggaa aagactctga aaggaacctc      1680
     cagggcactc gaaagacagg agacagcccg cctactacca gtcgggccgc cagggcaaac      1740
     tttaaaccaa ggataatccc ccaaatcagc tcctctgaaa ccggaaatgg gaggcaatct      1800
     cctgtttcaa gaaaagaaat tctctctgaa cctggactgg taacgcgggt tgaaatgatt      1860
     gaaaagaaaa ttgaccttct aatggaaaac ttttctaaac tcttcaggac ccagggaact      1920
     gaaattccgc tcggaaaatc tatttcaaca atctcgccca acgaacacca agccatattc      1980
     gtttaaataa cctttctccc ggcagtgata ttcacaaatt atgaatataa atcaattaaa      2040
     ctgcccaaat ggaaataccc ttaaactggg gtattggaat gcaggaggaa ttggacgaaa      2100
     aagggacgag ctcgaggtct ttatggatag ggagggaatt caaattatga tggtcatcga      2160
     aacaaaggtc aagaaaaaac ctcaagtcct tgacttccca ggtttttata catatcatgc      2220
     tcacaaccct agccgaaaca gtaaaggtgg cactgctatt ttggttaggc ataacattag      2280
     acattccgcc ttagagccgg tagaaacgga gtcctgccag agttccccta tcgttatact      2340
     cccttctagc ggctgccgcg ccgatatgat aataattgcg cctatatact gcccaccgac      2400
     tttcacctgg ctcccgactc actttgatag actcttcaaa cactttgatg atctgctagg      2460
     aggccgatca aaatttatta taaatggaga ctggaatgcc aaacatagaa gctggggcaa      2520
     ctatcaatcg tgtgttaggg gaagaaacct acatgaagcc ttatgttcca gaagggattt      2580
     ggaaatcctg gctacaggac aagctactca ttttcctttt gacaaaagaa agcagccatc      2640
     cgcaattgat ttctcggttt ttaaaggttt gcgccgcagc aatttgaaga tttcctcatc      2700
     ccccgatctc agctcagacc accttccctt aagcatcctt ataaacttta atgcccaaaa      2760
     ttctttctgc agtacttcaa accacaaacc taccatctca aaagccacaa accttagcaa      2820
     gtttaaaaaa ctgcttgacg agaaaatcct gttaaataca gaaatccaca gtggtgatga      2880
     tattgaagac tgcgttggta ttttcttaaa aaacatcaat gagtcggcta aggacgccac      2940
     cccccttttc cgcccacaaa atggctcaaa caatcgtcga cacagcagaa aaaacttcat      3000
     aactctggat gagaacacag ctagactatt ggatgagaaa agggaattaa acagaatatt      3060
     caggagtaca ggtactgagg aagccaagat ttggtttaaa catgctcaga ataaactagc      3120
     cagggaaatt aaaaaactaa gggaaaaaaa tatcaatgag atggttaagg acattgacac      3180
     caacgaccgg tacaaaatgc aaaagctgtg gaagatcaca aataatgtta aaaaagaaac      3240
     gcaaccttgc tggtctataa aacgcgaagt caacccaaac tccccggtct acagcaatcc      3300
     ctggacaaga actttaaatg agaaagcgga agcctttgta caccatcttg agggacgttt      3360
     taagccaaac ctgaaaaatg aggagtcgga taggatggag acgagaatgg agttggaagg      3420
     tttacaaaaa ggattatctg ctgagaagtc tactcatatt aggcctgtta cgctggaaga      3480
     gttgaacctg ttgatcgatt ccctggaaaa gaataaggct cctgggcagg ataaggtcga      3540
     taacaggcta atcaaacaac tcacaaaaaa tgccaggctt taccttcttc taatattcaa      3600
     tggtattctc agaactggtc atttcccatc tgcatggaaa catgcccaga tcacgatgat      3660
     ccttaaacca ggaaaaagcc catcttgcgt aaagtcctac cgtccaatta gcctcttggc      3720
     gggtttttca aaaatgttcg aaaaagtcct attgacaaga ctatatgaag ttgaactctt      3780
     tgtcaaggca atccctaatt accaatttgg ttttaagaag gaacacgggg cagagcagca      3840
     acttgaaaga gttacaaatt tcatattgca ggcatatgag gacaaagaag tctgctctgc      3900
     cacttttgtt gacatcactg aggcttttga tagggtttgg catgagggcc ttcttgtcaa      3960
     acttgcaaaa ctagttccca ccagactgtt tatcatacta aaaaactatc tcatggatag      4020
     aactttcacg gtgaaagtta caagcgaggt aatttctaga aagggcaaaa tcatggcagg      4080
     ggttccacag ggcagcatcc tgggcccaat tttgtattct atttacacat cggacatgcc      4140
     aatgcccgta aaacccagat ctagtagata tttcccgtcc tatttctcga aaaacgtaat      4200
     gattgccaca tacgcagacg acaccatcct gattggccgt gcctcaacag gaaatgcagc      4260
     ggtaaacctt tgccaaacct acataaccga gttctgtaaa tgggccaaaa gatgggacat      4320
     atccattaac ggaaaaaaga cggggcatgt ccttttctcc cttaaaggga atctggaaag      4380
     cggccactcc cctcccatag ttgatggaca aagggcgacg aaaagtacta agcaaaagta      4440
     cttaggtatt ctgttggaca aaaagctatc cctaggactc catgtcttac agctaaaaca      4500
     aaagttaact ggagcttaca ataaactgga atggctcctt ggtagaagaa gcaaaatgcc      4560
     aaacaacaca aaagcccttc tcttcaaaca aatcatctct cccatttggc actactccat      4620
     agcggtttgg ggatctatcg tttccaacac aaacgctggc aaaatccaag gtattgaaaa      4680
     cagactgatt aggaaatcca taaatgcgta tagatacacc agacaggctg ccattagaga      4740
     caaattcaac ataaagtcat taccggaagt ttataaccag gcctgccagc gacttgtggg      4800
     ctcagtggaa agtcacacaa atccgctgat cagggatctt ctaataaatc cctacattcc      4860
     aaaaagattg gcaccaagta gaccgagata cctggaacga tacaggaaat tctttctaac      4920
     taaacatcaa gcccttccaa aacgaccaaa agagcccata tacgacttta tatatggtta      4980
     tactgaggag gaagaaaaca agatctgttc cacactaagg caattatata gagacagtct      5040
     cccaaccctg cttcgtttgc aagatgagtt agatgaggta aaagagaaag aggaatgtct      5100
     tagaaaaaag atagaaaaac ggaaagcaat caaagaaaat cccccgagca ggtggggtga      5160
     gagtaaaata aataatttta acaaattata tagagagggt agagtttcaa gagagtactt      5220
     aatagaaata atggagggac agcccattgg gattataaga ataatcatcc ctgattttaa      5280
     attacatttg agcaaccaaa caatatttta tttaacggat taatagtttc tctactgaag      5340
     tgcgatgatg ctgcggtgct ctctgtcggc tgggcatcct gaatgagagg caccactgaa      5400
     atacccttac ttcagagaat tcatgccagt catatttgcg gcctgttgtg cggtaaacgg      5460
     cagatttgtg gctgatctga ttgcggtgct agaaatatct tatctgcggc tcaaatatgg      5520
     ctgatctctc ctcgcaagtc tctgcttttg attgaagata tttactctgt aattaatgat      5580
     gaatatactt tcaattatat ctgctgttat tcgaaactta cactggagag agacgttgct      5640
     ttacaagtga tagatgggac cggtttgcga cctctgtttc aaaccagccg agctttttct      5700
     gagaggcggc gtacatatgt gcgcctggac tgcggcgtgg gagcataccc tctacaaatc      5760
     gagtcctggg acccacgtta acaacggact ccagttgacg gccgtaatga ggcagatacc      5820
     cttcccgcag gcgacggatg aagcctttcc cagatgagag gctgctgcat tgttttcatg      5880
     atgatattag gtgcttaatc ttcagggact ttcagccaaa tttcctggca gacgttgaag      5940
     acaggcatcc ttactgacaa accttgcagc tcctcccacc tgtttgcatt gagtcccctc      6000
     tcatcagtga ctgcagtcgc gagtctttga actttaaatc ctgacaactg ggtcctgggg      6060
     cctcacattg acgctggagt gttattcccc aaaggatttt gcgaggcggc tttgagaatc      6120
     tcttactgag atggcttctc ttgggcgctt tggagtgact gccagataca ctttgcccca      6180
     atgtttatgc ccagctgtag ctaatgcaca tgcctgtcct gtgtgcgatg aagttggtgg      6240
     cgagtgatgt ttttgctgtt gaaggctgcc atttttacga ggcaccaata tggctggctt      6300
     ttcaccaaaa tccaagtgac cacaactgac gagctgctct ggcggaattg gttttcttta      6360
     tctgcaaaag gggattgatt atgtttctat ctcttgtcag cggcgtgagg tgcttaccaa      6420
     taacttcatg agacaagtaa atccaactga cgaccgcttg taagaaggcc aaaagcgttt      6480
     gcatattttc ctacacgctc agtttgtggg cttgcggggg tgcggtatgc gcctgccaaa      6540
     cgactgtttt ctggagatgc caacttactg cgacacagaa acagctgttt cttttctcac      6600
     cacgaccgat ttctccagct gcaatttgtc ttttgatgag ttgcttctgc aaaaagggat      6660
     tgattatgct attgctacat taacagcggc gtgagatact taccaagagc ttcatgaggc      6720
     aaggaaatcc aacaggcgac cgcttgcaag aggaggactg gaggcgtttg catgtttttc      6780
     tatacgcacg gtttgtggga tcgcgggggt gtggcatttg tttgccaaac gattgcttac      6840
     tggagatgcc aacctgctat gacacggaaa ccgctgcatc ttctcaccat gaccgagttt      6900
     tctacagctg atacttgttt tgctgcaaaa taaaactgga ttacgcctcc aataacttaa      6960
     aataataatc aaaactcaca ctggactttt gctgtcttta agcagcggcg aagcacagga      7020
     atctctgcag aaattcctga atacggcgtc ggcgttgcat tatttaaaaa taaaaagagg      7080
     cttgcggcgt gtttttcgac atcctctcct ttcttgccac ccaaaaagaa catagcagac      7140
     gaccgcttga aaggaaaact acagtgggtg ttggagtttt atgacgccgt ggcagcggtt      7200
     cattcaaata ggaggcgcca gaaaattgaa cccgtggctc cttagggctg caaagtcgga      7260
     ctccttttca cgagaaagtg gtcctttgtg cgcggttaag aaatgggttc tccagctgcc      7320
     tttcaccagt gactgccggc tgctgctttc gtcccaagtt gtgctcctgc tgcgccgtac      7380
     atctatctgc aaaatatgat tttatatgcc atataaatca aaactcactc tggattgatc      7440
     aacgcgcgag ccatcggact gcggcgagga aactttgaat cctgacaact gagtcctggg      7500
     gccccacatt ttcgctggag tgtgactccc caaaggattc tgcggggcgg ctatgaaaat      7560
     ctcttactga gatggattct cttgggcgct ctgaaatgac tgccggatac acttcgcccc      7620
     aatgtttatc ct                                                          7632
//
ID   Jockey-10_DY repbase;    DNA;    INV; 3596 BP.
XX
AC   .
XX
DT   15-FEB-2012 (Rel. 17.09, Created)
DT   15-FEB-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-10_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3596
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1931-1931 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% indentical to consensus. Telomere-associated Jockey.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..531
FT                 /product="Jockey-10_DY_1p"
FT                 /translation="MERNLSTSTKIGSKSISPHSLSPTHTSKVINISTNSR
FT                 SKSPALANADTLYKLANIYDNSRDHNQGETQHKFITRNTFFQNLYPKPDIS
FT                 KLSLKKKPTXLAGTXKRKASPPX"
FT   CDS           600..2378
FT                 /product="Jockey-10_DY_2p"
FT                 /translation="MGNTSASRTLNRPAAKRDLFNSPPNSTGALPMSFSEV
FT                 VAGTGPGLVASSDPAPITKTPGKRPNTNMDMDSLSYKTPNKKACVPTNFAT
FT                 PNPFPPLATPIFKSKAAKSIVEEIKAPRHPVESEKASARSAPAQTEIAPPP
FT                 PKNSATELPPWQIVPQSRRAPPIHIENVREIVPLLEKLNYSAGVDSFTTKT
FT                 SIGNGVTIQAKDLTAHRTIKDILAKSGIPFYSNQNKSERGFRVVIRHLHPS
FT                 TPCSWITSELQKLGHQTKFTRNMTNPATGGPMRMHEIEIVSAMDGSHLRIL
FT                 SIKQLGGQKVEIERKNRTREPVQCFRCQGFRHARNTCMKPPRCMKCAGQHW
FT                 SSECTKPRSTPATCSNCQGNHISAYKGCPAYKAEKQKLAVNRIDFHKIRTI
FT                 MDAKSNNNERQPPPPFNKTPRLPYSTEMAEARKEAARKSAMNPFRQNVKDS
FT                 RPNLPHLSSHEAAIQKRLNKWRRSANKASTNSRINPKVKAPNMTRNPAQRH
FT                 LEKFQNGLRKEQKNVEKAMEHKQGKDDSPPTTSRAALANLKPKIVKETTPS
FT                 PQNINTLPENSQPDDPVTKLANRVDNLEKKIDILMALIIQASNPDE"
XX
SQ   Sequence 3596 BP; 1210 A; 958 C; 693 G; 732 T; 3 other;
     aaagaaacag ctggcgccaa aagtagcgtc tcaaatgggc cagtggtttc ccctctttct        60
     atcacacata caaatagggg gaaaaaattg acaacagctc acaacaccaa tgcagctgaa       120
     actactaata ccaacacgga tgacaaaaag agcggcgctc ttagaaattt ccctttcccc       180
     acacatgaag acaacagcat ggagagaaac ctcagcacat ctacaaaaat tggctctaaa       240
     agcatttccc ctcactctct ctcacctaca cacacaagca aggttattaa cataagcaca       300
     aacagccgct caaaaagtcc cgcgcttgca aatgctgaca cactatataa actagccaat       360
     atatatgaca atagcaggga ccacaaccaa ggtgaaacac aacataaatt tataactcgc       420
     aatacttttt tccaaaactt gtatcctaaa cctgacattt ccaaactaag cttaaaaaag       480
     aaacccacca ntctcgcggg aactncgaaa agaaaagcat ctccccccan ctgaaaggcg       540
     cttctttgtg ttcccctgtt caggctaatt taaatttcaa agtcaccact acacactcta       600
     tgggtaacac atctgcatcc agaaccctca accggcctgc agccaagcgg gaccttttta       660
     attcaccccc caatagcacg ggcgcactgc ctatgagttt ttcggaagtg gtggccggaa       720
     ccggtccagg actagtggca tcctctgatc cggcaccaat tacgaaaacc ccgggcaagc       780
     gcccaaatac caacatggac atggatagct taagctataa aacgcctaat aaaaaagcat       840
     gtgtgcccac caattttgcg accccaaacc ctttcccccc cctagccacc cccatcttta       900
     aaagtaaggc ggccaaaagt attgtcgagg aaataaaagc cccccgccac ccagtcgaga       960
     gtgaaaaggc ctctgcacgc agcgcaccgg cgcaaactga aattgccccc cctcccccta      1020
     aaaattcggc taccgaactg cccccgtggc aaatagtgcc acagagccgc agggcccccc      1080
     ctattcatat agaaaatgtt agggaaatcg tgccactatt ggaaaagcta aattactcag      1140
     caggggtaga cagttttaca acaaaaacgt ctataggaaa cggtgtaact attcaggcga      1200
     aagacttgac tgcacataga acaattaaag acatactagc taaaagtggt atcccattct      1260
     attcaaacca gaataaatct gaaaggggtt tcagagttgt tattcgtcac ctgcacccct      1320
     ctaccccttg ctcgtggatc accagcgagc tgcagaagct cggccaccag actaagttca      1380
     caaggaacat gacaaatcct gcaactggtg gtccgatgcg gatgcacgag atagaaattg      1440
     tctcggccat ggacggaagc caccttagga tcctctccat taaacagcta ggaggacaaa      1500
     aagtggaaat cgaaaggaaa aacaggacga gggaaccggt ccagtgtttc aggtgccagg      1560
     gtttcaggca tgctaggaac acatgtatga agcccccaag gtgcatgaag tgcgctggcc      1620
     agcattggtc tagtgagtgc actaagccaa gatcaacccc cgccacctgt tcaaactgcc      1680
     aaggaaacca catcagcgca tataaggggt gccctgccta taaggcagag aagcaaaaat      1740
     tagcagtcaa caggatagat tttcacaaaa ttaggacaat aatggacgca aaaagcaaca      1800
     ataacgaacg gcagcccccc ccccctttca acaagacccc ccgactaccc tatagtaccg      1860
     aaatggccga agcccgaaag gaagccgcca ggaagtctgc aatgaacccg ttccggcaaa      1920
     atgtgaagga tagtaggcca aacctaccgc acctttcttc acatgaagcc gccatccaaa      1980
     aacgcctaaa taaatggcgc cggagtgcaa acaaggcctc cacaaatagc aggatcaatc      2040
     ccaaggtaaa ggccccaaac atgactagaa acccagcgca aaggcatctg gaaaaattcc      2100
     agaacgggct tcgaaaggaa caaaaaaacg tagaaaaagc tatggagcac aaacagggaa      2160
     aagacgacag ccccccgaca acgagcagag ctgctttggc aaatctgaag ccaaagatag      2220
     ttaaggagac aacgccctca ccacaaaata tcaacactct tccagaaaat agccaacccg      2280
     acgacccagt cactaaactg gcaaatagag ttgacaatct ggaaaagaaa attgatattt      2340
     taatggcctt aattatacaa gcaagcaatc cggacgaata aacctcttga cgacgtattc      2400
     ctgctgaccc ccacgatgaa gacgcgaagg atgccaccca ctaggaccag catagacgaa      2460
     tctggaagct gatggacagg agaaggatca acgcgcagca aaaacatgat gaatttaagt      2520
     cgactcattg cagcagcgta tgcacaacgt cacttatctg aattgtttgc tgcaattcct      2580
     ttgaaatgtc ccaaaacagc agctgcaatc tctacgaaag ccatacttga cgacaaaaga      2640
     cgacccgact gggcgtaatg gacaaactaa cttcttgaca ctcataacac aaaaaacata      2700
     caatgttttg atgcagtttc cttattggga ttcccccacg tttttacaga ccctaggcgt      2760
     ggtgctgccg acccggcaaa aggtcgaaat cgtaacctct ataattgact tttttcctcc      2820
     agaaatgcaa tatcgacaaa atctccgtta aagattgaaa tactttaatc aaaacataaa      2880
     acagagcact atataataat atatataaaa atccacaatg ttttgatgcc gtccctattc      2940
     cgggaagccc cctcgatttt attgaccctt ggtgcggcgc tgccgacccg gcaaaaggtc      3000
     aaaatcgtga cccttgaatt tcgacttttt ctggtagcaa cgataacact gacaatatcc      3060
     ctgaaaaaga ataacatatt aataaaagca taaaactacg caacctacta cttccctact      3120
     aggcgcaacg aaaaacgaag cttttggcac ctaaaacatt aaaatcctat aatgtttgga      3180
     tgccgtctcc atgttggggt gcaccctcgt ccttctgaac cctaggtgcg ccgctgctga      3240
     cccggcaaaa ggtcaatctc gcgacccttg aattcgactt tttcctggca gcaacggtat      3300
     acagacaaaa tccctgtaaa atcataaaac aaattaaaaa acaaatttat aaaagcataa      3360
     aaccacgcaa cttactactt cccgactcgg cgaaatgaaa aacgacgatt tcggcaccta      3420
     aaacattaaa aacctaaaat gttttgatgc cgtttccatg ttgggatgcc ccctcgtcct      3480
     tacgaattcc aagtgcggcg ctgctgaccc ggcaaaaggt caaaatcttg acccttaaat      3540
     tccacctttt cccggtagca acggtatact gacaatatcc ctgaaaaaga gcaaaa          3596
//
ID   Jockey-11B_DBp repbase;    DNA;    INV; 4332 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11B_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4332
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 717-717 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is >80% identical to
CC   that of Jockey-11_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1398
FT                 /product="Jockey-11B_DBp_1p"
FT                 /translation="MDWQDAPHSIKIKPPSKKKPYSNFQDVDSSDSELGEM
FT                 KRKSAKKPVREDEPTTSKAARAALKANIESNYYAILSDLEDEVLDNGMEAA
FT                 DDEEVLMXSKSPKKKEIKPPPIFIPDVSNIAALISCIEDIVGKKKDFSYKA
FT                 ARDNQVRIMMPDKESYSALKSQLDSAGKRYYTFQPKEDRAYRIVVKGLHHT
FT                 TDIDEIKEDFRRQGHAVRDVHNAIGHITKNPLPIFFLNLEPSSNNKEVFSV
FT                 NRICHSVVKVEPPRKFHDVPQCYRCQGFGHSQRYCKLQHRCVKCGEQHSTS
FT                 ECRKNRKEAAKCVHCHGPHPASYKGCPAYKKAKASMAPKDPRPAQPRRLAF
FT                 QPVQHYPTVDTLSRSYADIARGGARSQQQQAAAPEMPQADQLAAFTSRVES
FT                 LLERVLDKMLERMTTMMSAILTQICNK"
FT   CDS           1389..4103
FT                 /product="Jockey-11B_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQQVGLHVAFWNANGLVNKRLEVEHFIHTRCIDILLI
FT                 SETHFTHKSFLTLHGYDIIHANHPSGRGHGGAAIIIKSSIDYSEIARIKEE
FT                 WIQCAKINVSTPGGKIMIGSAYIPPRQRVSDNQFDLLLNDMGDKFILAGDF
FT                 NAKHPWWGSRVTNPKGSTLFRCIQRRAFNCHSTGEPTYWPTDPQKRPDLLD
FT                 FAISHGIHPDSIACSSNADLLSDHSAVELHINTPVEKKVISSRMIRSRTNI
FT                 ETYTGWLNNALGNTQPDLNTGFDIDNAVVNLTQEMHNAXLVATPRAPCNNK
FT                 ILQRHLHLWSPEVALLLNEKRRLRRXWFRTRYPSDKTALNRATKRLTKLLQ
FT                 RLRTCAFEEYLRQVEPGDPEHNLWQLTSHIKRPKKRVAQVRKPDGEWCRSD
FT                 QERADAFAAHLEDAFTPFNRCSEVDQAETERFLSLPCTDFCQLEPVSEEEV
FT                 QEEVAGLNTKKSPGADGLEALAIKLLPPLGIQRLTSIFNACLEIGHFPSDW
FT                 KKAEVILIPKPGKPEAGLASYRPISLLSVLSKLLERVFLRRFQTVLDEAGL
FT                 IPDHQFGFRRCHATPEQCHRIVQKILNSLEEKKYCCAVFLDVKQAFDRVWH
FT                 PGLLMKIKRSVPHEHYAFLKSYLNDRSFRVRCGDARSDYRPIKAGVPQGSV
FT                 LGPILYTIYTADMPVAEEEGLLAATYADDTAFLTSAIFPEEASASLQRQLD
FT                 ILDPWLRRWNIAVNHEKSAQTTFTMRRGDCPGVSLGGTPIPASPTPKYLGM
FT                 TLDRRLTWRTHLQRKRTQIGIKLRQLNWLIGRRSRLKLRVKLLIYKAIVKP
FT                 VWTYGIQLWGTACLSNRRIIQIAQNKALRTLTGAHPFHDNATIHAQLRVPY
FT                 VSEEVQRFANRYVERLDRHPNPEAINLLDNSYTTRRLKRTHPLDLCHSGER
FT                 D"
XX
SQ   Sequence 4332 BP; 1297 A; 1089 C; 988 G; 954 T; 4 other;
     aggaagattg ctttgaacct aacgtatagt ttttagtgtg tgttaaaaaa tcaaaaattt        60
     catcaaaaac caaaaaaata aaaaaccact tttatatact caatcttgcg gccaattgtg       120
     gacaaaatca acacaatgga ctggcaagac gccccccact ccatcaaaat caagccgcct       180
     tctaaaaaga agccctattc taactttcaa gatgtcgact ccagcgactc cgagcttgga       240
     gaaatgaaac ggaagtcggc taaaaaaccc gtcagggaag acgaaccaac caccagcaaa       300
     gcagcaagag cggcattgaa ggctaatatt gaaagtaatt attatgctat tctatctgat       360
     cttgaagatg aagttttaga caacggcatg gaagcggccg atgatgaaga ggtacttatg       420
     wcttctaagt cccccaagaa gaaggaaatc aagccaccac cgatttttat cccagatgtc       480
     tctaacattg ctgctctaat ttcctgcatc gaggacatcg ttggcaaaaa gaaggacttc       540
     tcctacaaag ccgccagaga caatcaggtg aggattatga tgccggataa ggagtcgtac       600
     tctgccctca aatcccagct tgatagcgcc gggaaaagat attacacatt ccagcccaag       660
     gaagatagag cctacagaat tgtagtaaag ggactccacc acaccaccga tatagacgag       720
     attaaggagg actttcggcg tcaaggacat gcagtccgtg atgtgcacaa tgccataggg       780
     cacatcacca agaatccact acctatattt tttcttaatc tagagccgtc tagcaacaac       840
     aaagaggtct ttagcgtgaa tagaatctgc cactctgtgg ttaaggtgga acccccacgc       900
     aaattccatg acgtgccgca gtgctatcgc tgccaaggat ttggtcatag ccagcgatac       960
     tgtaaattgc agcatcgttg tgtcaaatgt ggtgaacaac acagcacaag cgagtgcagg      1020
     aaaaatcgaa aagaggcggc aaaatgcgtg cactgccatg gaccccatcc tgcctcctac      1080
     aaaggctgcc cagcatataa gaaagccaag gccagcatgg cccctaaaga tccacgtcca      1140
     gctcaaccac gtcgtttagc tttccaaccc gttcaacact atccaacagt ggacacctta      1200
     tcaaggagct atgctgatat agccagggga ggagcccgtt cacaacagca acaagcggca      1260
     gcacccgaga tgccacaagc cgaccagttg gcagccttta cgtcgagagt ggaaagcctc      1320
     ctggagagag ttttggataa gatgttagaa cgtatgacaa caatgatgag cgccatcctt      1380
     actcagatat gcaacaagta ggactgcacg tagccttctg gaacgctaac ggcctagtta      1440
     ataaaaggct agaagtggag catttcatcc acacccgctg cattgacatt ttgctaattt      1500
     cagaaaccca ctttacacac aaatcattcc tgactttaca cggctacgat atcattcatg      1560
     ctaatcatcc cagtggcaga gggcacggag gagcggcaat tataatcaaa tctagcattg      1620
     actacagcga gatcgcaaga atcaaagaag aatggatcca gtgcgccaaa atcaatgtct      1680
     ccacccctgg ggggaaaatt atgatcggtt ccgcttatat tcctcctaga cagagagtgt      1740
     ccgataacca atttgattta ctgctgaatg acatgggcga caaattcata cttgcaggtg      1800
     atttcaatgc caagcaccca tggtggggct cgagggtgac taaccctaaa ggatctacgc      1860
     tattcaggtg tattcagcgt agagccttca actgccattc aaccggagag cctacgtact      1920
     ggcccactga cccccaaaaa cggccggacc tactggactt tgctatatcc cacggaattc      1980
     atccggactc cattgcctgc tcgtcaaatg cagatctcct ttcggatcac agcgcggtgg      2040
     agctccacat taatacccct gttgagaaga aggtcatcag ttcccggatg ataagatcac      2100
     gtaccaacat cgaaacctac acagggtggc taaataacgc cctaggcaat actcagccgg      2160
     acctcaacac aggatttgat attgacaatg ccgtggtcaa cctcactcag gagatgcaca      2220
     atgctkcctt agtcgcaaca ccaagggctc catgcaataa caaaatcctt caaaggcacc      2280
     tacatttgtg gtctccagaa gtagctctac tgctcaatga aaagcgacgg cttagaagga      2340
     tstggttccg aactaggtat cccagcgaca agacagctct caatcgtgcg accaaaagac      2400
     tcacgaagct gctccagagg ttgcggactt gtgcttttga agaataccta cgtcaggttg      2460
     agcccggcga ccccgagcac aacttgtggc aactgacaag tcacatcaag cgtccaaaga      2520
     aaagggtggc tcaggttagg aaacccgacg gtgagtggtg ccgctccgat caggagaggg      2580
     cggacgcatt tgctgctcat ttggaagacg ccttcactcc attcaataga tgctcggagg      2640
     tggaccaagc tgagactgag aggtttctgt ctctaccctg cacggatttc tgtcaattgg      2700
     agccagtctc ggaagaggaa gttcaagagg aggtcgctgg ccttaacacc aaaaaatccc      2760
     cgggtgcgga tggccttgaa gcacttgcca ttaaacttct ccccccatta ggtatccaaa      2820
     ggcttacgag catattcaac gcgtgcttgg agatcggcca cttcccctct gactggaaaa      2880
     aggcggaggt catactcatt ccgaagccag gaaagcctga agctggtctt gcctcataca      2940
     ggccgataag cttattatca gtactatcca agttacttga gagagtattt ctgcgcagat      3000
     ttcagaccgt attagacgag gctggcttga ttccagacca tcaatttggt ttcaggcgtt      3060
     gtcacgccac cccggagcaa tgccacagga ttgtacaaaa gattctaaac agcctggagg      3120
     agaagaaata ttgttgcgca gttttccttg acgtcaagca ggcatttgac agggtctggc      3180
     atccaggact actaatgaaa ataaaaagga gcgtacccca tgagcattac gccttcctca      3240
     agtcatacct gaatgacagg tcatttaggg ttagatgtgg agacgcaagg tcagattata      3300
     ggcccattaa ggcaggtgta ccgcagggca gtgtacttgg ccccattctg tataccatat      3360
     acacagccga catgcctgtc gctgaagagg agggccttct agcggctacg tatgcagacg      3420
     atacggcatt tttgacctct gcaatctttc cagaggaggc ctctgcgtct ctccaacgcc      3480
     agctggacat ccttgatccg tggcttcgaa ggtggaacat tgccgtcaac cacgaaaaat      3540
     cagcccaaac gacttttaca atgaggagag gcgactgtcc tggagtcagt ctcggaggca      3600
     ctccaattcc agcaagccct acacccaaat atctgggtat gaccctggat agaaggctca      3660
     cctggagaac ccacctgcag cgcaaacgga cgcaaatcgg gatcaagctg cgtcagctca      3720
     actggctcat tggaaggagg tccaggctga agctaagagt caagctcctt atatataagg      3780
     ccattgtaaa gccagtctgg acctatggta tccagctatg ggggacggcg tgtctaagca      3840
     accgaaggat catccagatc gcccaaaaca aggccctaag aactttaact ggagctcatc      3900
     cgttccacga caatgcgaca atccacgccc aactgagagt cccatatgtg agcgaagaag      3960
     ttcagcgatt cgccaatagg tacgtggaaa ggctggaccg acatcctaac cctgaggcca      4020
     tcaatcttct ggacaacagc tacaccacaa ggaggctgaa acggacccac ccactggacc      4080
     tctgccactc gggcgaacgg gactgagctg cagttgtaaa accaacaagg cccactaaag      4140
     ggcccgacaa taaataactt gaattctatc gctaaggttt actgttaaaa ttagtttcct      4200
     aggataagca aacattgtac tactcaatat ttcattaagt taaggtccca ttataaaatt      4260
     taattattgt ccataactcc ggacagattt taaatataac tattgattga ttgataawaa      4320
     aaaaaaaaaa aa                                                          4332
//
ID   Jockey-11_AAe repbase;    DNA;    INV; 3782 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3782
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1377-1377 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with 89-93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           35..913
FT                 /product="Jockey-11_AAe_1p"
FT                 /translation="MVHTKPEYDRVCANLKDAGVEFFTHDIPGDKPFKAVI
FT                 RGMDNTDPKRIQAELRNRYKLDATAVYRMARRDELTKMYPDCLYLVHFRKG
FT                 SVSLNALQAVRTIGSIIVXWEPYRGGRRDVTQCQRCLNFGHGTRNCHLRPR
FT                 CSICAESHDSAACPRNGAAVDAVAFKCANCGEAHQGSDRRCPKREAFKQLR
FT                 KAASTSNQPGRRKEKAPAFRPEDFPPLPAGGNFPQVPPTWPRRRPPPAAAN
FT                 QPSGEARMNPSIRRGAGHAGLRGAHHQAILQDPVRAAACCSLHYQQIWGLS
FT                 R"
FT   CDS           927..3269
FT                 /product="Jockey-11_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MERLLCKGKTIELADFVGKHSIDVGLITETHLKSGDS
FT                 FWLPDHNIIRLDRTNSRGGGVAIIVKKGIKFSILPHIRVSVLEALSVEVET
FT                 STGSIRCTAVYCPRQCTDSNGLGTSFKNDLTALTRTNSRFVIGGDLNARHE
FT                 AWRNYRRNQNGKLLFDHEQHGLYTVQFPDEPTFISPAGNPSTLDFFLANVQ
FT                 LSKPVALNDLSSDHQPVVAEINVNVASAPSYLRKDYHHVNWVAYARMVDRR
FT                 VDENQPLDTEEDIDRALEGLHQAITVADETCVRRVPVRGKFVAIDSHTQML
FT                 IRLRNIRRRQFQRTGDLSKKRETAYLNRQIASRMASIRNESFGRVIQNLDD
FT                 RSRPFWKVAKVLKTHPKPVPPLKVGDSLLITPLEKANAIGDHIASSHLLGS
FT                 QIHSPMEDQVAQCVHDIDTSPCAVPPEDKITSEQISSALKQTKNMKAPGFD
FT                 GIFNLILKHLNIKVYELLSAIFNRCLELHYFPSSWKVAKIIPIRKPGKDPT
FT                 LPSSYRPISLLSALSKLFEKLILNRLVKFVDERNILLPEQFGFRKGHSTTH
FT                 QLVRVMNTIRSNKAVSKSTAMALLDVEKAFDNVWHDGLVYKLCYFNFPPHL
FT                 IKIIRSYLQQRSFRVSLNGYLSNAFPIPAGVPQGSLLGPLLYSIYTSDIPP
FT                 LGXGCVFFLFADDTAIAVKGRMPTEITNKLQRCLDAFVEYASTWKIKINAS
FT                 KTQAVMFLHRQSYRLKPPPNCTVTMDGTRVEWSSEVXYLGLLFDDKLLFRS
FT                 HVDRTLTKCSALNQKPVSADCPQISPLEGE"
XX
SQ   Sequence 3782 BP; 977 A; 1086 C; 913 G; 798 T; 8 other;
     ggaattcaaa ctgaccagga tcggcaccaa ggtgatggtg cacacgaagc cggagtacga        60
     tcgggtgtgt gccaacctga aggacgcagg ggtggaattt ttcacccacg acatcccggg       120
     cgacaaaccc ttcaaggccg tcatcagggg catggacaac accgacccga agaggatcca       180
     agcggagctt cggaaccgmt acaaactgga cgcaactgcc gtctacagaa tggctcggcg       240
     tgacgagctt acgaaaatgt acccggattg cctctatctg gtgcattttc gtaagggctc       300
     ggtttcgctg aacgctctcc aggcggtgcg caccatcggg agcatcatcg tcmgctggga       360
     accctatcgc ggaggccgcc gcgatgttac ccagtgccag cggtgcctca actttgggca       420
     cggcaccaga aattgccacc ttcgacctcg ctgcagcatc tgcgccgaaa gccacgactc       480
     tgctgcctgc cccaggaatg gggccgcggt ggatgcggtg gcattcaagt gtgccaactg       540
     tggcgaagca caccagggct ccgatcgtcg gtgcccgaaa cgagaagcat tcaagcaact       600
     ccgaaaggcg gcttcaacat caaaccagcc gggacgaagg aaggaaaagg ctccggcgtt       660
     caggcccgaa gatttcccgc cgcttccagc tggcggcaat ttcccgcagg tgccccccac       720
     ctggccgcgt cggcgtcccc cccctgccgc tgcgaatcaa ccgtccggtg aggcacggat       780
     gaatccctct atccgacgag gagctggtca tgctggtctc cgaggtgctc atcatcaagc       840
     gatcctgcag gacccggtca gagcagctgc gtgctgtagt ctccattatc agcaaatatg       900
     gggactaagc cgctgaccat cgccacatgg aacgcttgct ctgtaagggc aaaaccatcg       960
     agcttgctga tttcgtcggc aagcacagca tcgacgtggg gctcatcacc gaaacccacc      1020
     tcaaatccgg cgacagtttc tggctgccgg accacaacat catccgcctt gatcgcacca      1080
     actccagggg gggcggcgtt gcgatcatcg tcaagaaagg catcaagttc tccattctac      1140
     cccacatccg cgtgtctgtc ctggaggcac tcagcgtgga ggtggaaaca tcgacgggga      1200
     gcatccggtg cacggcggtg tactgtcctc gccagtgtac cgatagcaac ggcctgggaa      1260
     ccagcttcaa gaacgacctg actgccctca ccaggacaaa ctctcgcttt gtcatcggtg      1320
     gcgacctgaa tgcccgccac gaagcttggc ggaactatcg gcgaaaccag aacggaaagc      1380
     tgctcttcga ccacgaacaa catggattgt acacggtgca attcccggac gaacccacct      1440
     tcatctcgcc ggcaggaaat ccctcaaccc tggacttttt cctggccaac gtccaacttt      1500
     ccaagcctgt ggcgctcaac gacctcagct ctgaccacca accggtggtg gccgaaatca      1560
     acgtgaacgt ggcctccgct ccatcctacc tgcgtaagga ctaccaccac gtcaactggg      1620
     tggcatacgc gcgaatggtg gaccgccgcg ttgacgagaa ccagccattg gacaccgagg      1680
     aggacatcga ccgggccctg gaggggcttc atcaggccat aaccgtggcc gacgagacgt      1740
     gtgtgaggcg agttccagtg aggggtaagt ttgttgccat tgattcccac acccaaatgc      1800
     ttatccgcct gcgcaatata cgtagacgcc agtttcagag gaccggagat ctgagtaaga      1860
     aaagagagac ggcctatctg aacaggcaga ttgcttccag aatggcttca atccgcaacg      1920
     aaagtttcgg acgtgttatc cagaaccttg atgaccgatc tagaccattc tggaaggtag      1980
     ccaaagtcct caaaacccac ccaaaacctg ttccacctct caaggtcggt gattcgcttc      2040
     tgatcactcc gctcgagaaa gccaatgcaa tcggcgatca cattgcttca tcccatctgc      2100
     ttggatcgca aatccacagt ccaatggaag accaggttgc gcaatgcgtc cacgatatag      2160
     atacctcccc ttgtgctgtc ccaccagaag acaagatcac ctctgaacaa atctcctcag      2220
     cgctgaagca aaccaaaaac atgaaggccc ccgggtttga tgggatcttc aacctcatcc      2280
     tcaaacattt gaacatcaaa gtttacgaac ttttgagcgc catcttcaac agatgcttgg      2340
     aattgcacta cttcccaagc tcctggaagg ttgccaagat cataccgatc cgcaaacccg      2400
     ggaaggaccc cactctacca tcgagctata ggcctatcag cctgctctca gcgctgagca      2460
     aactctttga aaagctcatc ctcaaccgcc tcgtcaagtt tgtcgatgaa cggaacattc      2520
     tcctgccgga acagttcggg ttcaggaagg ggcattccac aactcaccaa ctcgtgaggg      2580
     tgatgaacac catcagaagt aacaaggctg tatccaagtc cactgccatg gccttgttag      2640
     acgtcgagaa ggcgtttgac aatgtatggc atgacgggct tgtatataag ctttgttact      2700
     tcaactttcc acctcacctg atcaaaatca tccgaagcta ccttcagcag aggtcgttca      2760
     gggtatcgtt gaatggctat ttgtctaacg ccttcccaat accagcagga gtgccgcaag      2820
     gcagcctgct tggtccgctg ctttacagca tctacacatc cgacattcct ccccttggcg      2880
     akggctgtgt gttctttctg ttcgcagatg acaccgcaat agccgtcaaa gggaggatgc      2940
     ctaccgaaat caccaacaaa cttcaacgat gccttgacgc ctttgttgag tacgcttcca      3000
     cctggaagat caagatcaat gcctccaaaa cccaggctgt gatgttcctc catcggcagt      3060
     cctacagact gaaaccccca ccaaactgca ctgtgaccat ggatggcaca agggtcgagt      3120
     ggtcgtcaga ggtastgtac ctcggactgc tgttcgacga caagctactg ttccgctcgc      3180
     atgtcgatag aaccctgacc aaatgctccg cccttaacca gaagcctgta tccgctgatt      3240
     gcccgcagat ctcgcctctc gagggcgaat aaactggcgg tctacaagcw ggtgatatcc      3300
     cctgcactac tstacgcagc tccggtgtgg ggwcaatgcg cacaaaccca catagctagg      3360
     atccaagtcg cacaaaatcg tgcgctaagg atgatccttg atagcccttt tggcacaagg      3420
     atcatcgacc tacacgagga ggcaaattgc cccsaattag cgagaaaatt aggaatacga      3480
     cagagtcttt taagcagaaa tgcataatat ctgaacatgc tctaataagc gccttgtata      3540
     tagtagatta ggttagtttt aaggtgtaaa tagtagtttt aagtttgtat atattttcca      3600
     aattccacca atcccacatt tgtggtgaac ttaatatttc attttatttc taaaaaacca      3660
     ttattatatt tcaaatcgac caccaaagat gaaaaggtat actcctgtat cacttaaaac      3720
     taaatatgta atccacaaaa acatgcaata aagattattg aaagtcaaaa aaaaaaaaaa      3780
     aa                                                                     3782
//
ID   Jockey-11_BTa repbase;    DNA;    INV; 6036 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6036
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 955-955 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           259..1962
FT                 /product="Jockey-11_BTa_1p"
FT                 /translation="MRECFTHGIAQCTICKCTTHSRTDCLDAICSKIKDSN
FT                 IATENSRRSLLSQSSSLQSSLSQSRRDSLQHSTSQGNNSNSNPTVHPALSS
FT                 TSLTQPQSEVNIIAILQEQNRSLTENNKKLLDRIEELTSQIKNQSEQLAAL
FT                 QAQLTNKNPSPPRKQFKTSDKVPSLSKRKLFHDNNRYDILSSSEGENDDED
FT                 KDESMDITLGSDASVFETPAQPAFKDPVMAKATKAISQRKVQSKKKDDKTN
FT                 QPKPNSSDASQPDLNKGKIGVRPPPPIITAVDTNFTVLGHTLKNVDKSKWS
FT                 STALPQGSFKINAFDDSTHDIIVRLFKECKIFCNTYENKNNRPIRVMFKGL
FT                 HHSTDPNDIIADLKNKGFKPISAINIVQKKRIVTKIDTKISKTNTPKNTNV
FT                 SDKTTEQINPNLSQENNSANLISNANLSAPQDTETNKIQQTLSQQTTQNEH
FT                 AVPDANANNDSERLVNQDQIIQSEEATNGKSSNSQTSSNDEQVHIEIKPFN
FT                 LFAVSFDHSDDVEKIFKIRLVANMTVIVEPVRPNPRDLPVQCHRCQSYNHT
FT                 ASFCNYTQMRPVCQRARDRKL"
FT   CDS           join(2077..2400,2348..5134)
FT                 /product="Jockey-11_BTa_2p"
FT                 /translation="MNKLRERYSIRNKQEMLLETPTAKSSLKKGVTFSDSI
FT                 KNINKNNNQSNSNLSDSNISSNQSPNNQDSDIAQTLNTILDAINSLSVRIT
FT                 KLENSQFPQLRNGPNHRRNRKTPSFLNLGMAQTTDGIVDMSANSANLRIAA
FT                 FNCNGLLNRVDEIDRYINDNKFDIMLLTETHLASGLHYYRKPNNYIFYRVD
FT                 HPEDNARGGVGLLIKKSIQHSYDPRTNVSADAIQSVGIEIKTNLGEIYVAS
FT                 AYFPPNSKEFNFNFIKNFFLSLPKRHILGGDFNSKSVSFGCKKTSPRGTIL
FT                 KKVLQELGETTLTDGFPTYYPSDPNRHPDILDYWITKNISRNYCAVGSDLA
FT                 MNSDHIPIKIHIFQKIILKPKNLVTNSKTDWNLFRDKLNSSISRQEITDIA
FT                 ELDREAEEIANLIRSAATESTPVTLYSDHAPPLPPEIRELIKERRRARAKW
FT                 IKSRFFKDKIYYNKVNHVTTHKISELRNENTRKFLETLTPTHHTDYSLWKI
FT                 TKYLKKGDTFNQPLQRPDSSWTKTNQETANELCRHLEDVFKPDNSAPLELH
FT                 PDQEILKTKPKDVVEISEISHSEVADIIKYKINIHKSPGLDLVTGQMLKQL
FT                 PSLAHKKLADIYNAALKLKYIPLAWKKADVICTHKKNKPRHLASSYRPISL
FT                 LAIIGKVFERLYLKRLLPIVDEMKIIPPHQFGFRRKHSTVEQIHRFINFIN
FT                 KTMERGLVCATAFLDIQAAFDKVWIEGLALKIYRSLPYNHYEILRNYLSDR
FT                 SFRVRYEDAVSDFTPILASVPQGSVLGPLLFLIYLADFPKLRRTKKGKFAD
FT                 DTALGTFGSTPREANKYLQSSLNKTAKFCSKWKITLNSRKSQHTVFSLNKD
FT                 PVTEVRLDGETIPQKKTANYLGVLLDRHLTYRRHIMAKKLQILNKYKKLWW
FT                 LLRPGSGLSTYNKLLIYKVVLKPIWTYACPLWGCAKKSNINEIQTADNVIL
FT                 RGLSGVRWDDYIPNKMVRHLLGVPTVKETIKQYSLRYATRLSNHPNDKAAN
FT                 LLYKYKAGPRRLNRKHPFDCVSSEVIKLMSE"
XX
SQ   Sequence 6036 BP; 2081 A; 1293 C; 981 G; 1681 T; 0 other;
     agttccgttt gataagccaa cgcgagcaga cctacgtaac tgtaacgctc ccacaatcta        60
     atcaactgat ctctaggctt ctcgctgtaa aatataggct ttatgcctac gtgtacaaaa       120
     actgtgattt tataaactaa aaattactat gtaattttac cataaactta ctatctgggg       180
     gtatctaccc ccagatactt tctttttctc gatacttttg tgactactgt gtggtgaata       240
     acattcgaac aatccaaaat gcgggagtgc ttcacccacg gcatcgctca atgcactatc       300
     tgtaagtgta ctactcattc aagaactgat tgtctagatg caatctgtag taaaattaag       360
     gacagtaata tagctaccga aaactctaga cgtagcctgt taagtcaaag ctccagttta       420
     caatcatctc tctctcaaag tagaagagat agcctacaac attctactag tcaaggcaat       480
     aatagtaatt ctaacccaac ggttcaccct gccttatctt caacttctct cactcaacct       540
     caatctgaag tgaatataat agcgatcctt caagaacaaa atcgttcttt aaccgagaac       600
     aataagaaac tacttgatag aatcgaagaa ttaactagcc aaattaaaaa tcaatcagaa       660
     cagcttgcag cccttcaggc tcaattaaca aacaaaaatc catctcctcc acgaaagcaa       720
     tttaaaacat cagataaagt tccatctctt tcaaaaagaa aattattcca cgataataat       780
     cgctacgata tcctaagttc ttcagaaggt gaaaatgatg atgaagataa agatgaatca       840
     atggatatta ctctcggctc cgatgcttct gtattcgaaa cccccgctca acctgctttc       900
     aaagatcctg tcatggccaa ggcaaccaag gcaatctcgc aaaggaaagt gcaatccaag       960
     aaaaaggacg ataaaaccaa tcaaccaaaa cccaactcat ctgatgcttc tcaacctgat      1020
     cttaacaagg gtaagatagg ggtcagacct cctccaccta ttattactgc ggttgatacc      1080
     aacttcacgg tattaggtca tacccttaaa aacgtagata aatctaaatg gtcatccacg      1140
     gccttaccac agggctcatt taaaataaat gctttcgatg attcgacgca tgatatcatc      1200
     gtgagattgt ttaaagaatg taaaatattt tgcaatactt atgagaacaa gaataataga      1260
     cctattagag tgatgttcaa aggattgcat cactcaacag atcccaatga tattattgca      1320
     gacctaaaaa ataagggctt taaacccatt tctgcgatta atattgtgca aaaaaaacgc      1380
     attgtgacta aaattgacac taaaatcagt aaaactaata ccccaaagaa tactaatgtt      1440
     tctgataaaa ctacagaaca aattaaccca aatttgtccc aagaaaataa ttctgccaat      1500
     ttaatttcta atgctaattt gtcagctcct caagatacag aaaccaataa aatccaacaa      1560
     actctatccc aacaaacaac gcagaatgaa cacgcagtac ctgatgccaa tgctaacaat      1620
     gactcagaaa ggttggtaaa tcaggaccaa attattcagt cagaagaagc aactaacggt      1680
     aagtcttcta attctcaaac ttctagcaat gacgaacaag tgcacataga aatcaaacct      1740
     tttaatctat ttgctgtatc ttttgatcat tctgacgatg tagagaaaat attcaaaata      1800
     cgattagttg ccaacatgac tgtgattgtt gaaccagtgc gtcccaaccc cagggactta      1860
     ccagtgcagt gtcatcgttg ccaaagttat aatcacactg cctcattttg taactatacc      1920
     caaatgcgtc cggtgtgcca aagagcacga gaccgtaaat tgtgatcttc ctagatttat      1980
     ctctaaccct aagtgtgcca actgtggttt gggccaccct gccagttata gaggctgtga      2040
     aattgccaaa gaaattgcta aagaacgcaa agaaaaatga ataaattaag agaacgatac      2100
     tcaatccgta ataagcaaga aatgctcctt gaaactccta cagctaaatc ttcattgaaa      2160
     aaaggtgtaa catttagtga ctcgatcaaa aacataaata aaaacaataa ccaatcaaac      2220
     tctaatcttt cagattcaaa tatatcttca aaccaaagtc ctaacaatca agattccgat      2280
     atcgcacaaa cattaaatac catccttgat gctatcaaca gtctatctgt aagaattaca      2340
     aaattagaaa actcccagtt tcctcaactt aggaatggcc caaaccacag acggaatcgt      2400
     tgatatgtct gccaattctg ccaatttaag aatcgctgct tttaactgca atggcttgct      2460
     aaatcgtgtg gatgagattg acagatatat caacgataat aaatttgata ttatgttgct      2520
     cactgaaact catctagctt cagggttgca ttattataga aaaccaaaca attatatatt      2580
     ttatcgagtt gatcaccccg aagataatgc taggggaggt gtcggtcttc tgattaaaaa      2640
     atcaatccag cactcctacg atccgagaac taatgtgtct gctgatgcaa tacaatcagt      2700
     ggggattgaa attaaaacta acttgggcga aatttatgta gcctctgctt attttccacc      2760
     taatagcaaa gaatttaatt tcaatttcat taaaaatttt ttcttatccc tcccaaaacg      2820
     ccatattttg ggaggtgact tcaatagcaa atcagtttcc tttggctgca agaaaacttc      2880
     acccagaggc actattctca aaaaagtact gcaagaactt ggagaaacaa ccctcactga      2940
     cgggtttcca acttattatc cctctgaccc aaatagacac ccagacattt tagattattg      3000
     gattacaaaa aatatctcaa gaaattattg tgctgttgga tctgatcttg caatgaattc      3060
     agatcatatc cctattaaaa tccacatatt ccaaaaaatt atactaaaac ctaagaattt      3120
     agtcactaat tccaaaacag attggaactt attccgagac aaattaaatt cctcaatttc      3180
     aagacaggaa attaccgata ttgctgagtt ggatcgtgag gcagaggaga ttgccaactt      3240
     gataaggtcg gccgccactg aatcgactcc agttacttta tacagtgatc atgcaccccc      3300
     acttccccct gaaatccgag aactaatcaa agaaagacgc agagccagag caaaatggat      3360
     aaaatcccga ttcttcaaag acaaaattta ttataataaa gtcaaccatg taacaactca      3420
     taaaatttcg gaattaagaa atgaaaacac aagaaaattc ttagaaaccc taacacccac      3480
     ccatcatacc gactattcac tttggaaaat cacaaaatat ttaaaaaaag gtgacacttt      3540
     caaccagccc ctacaacggc cagattcgtc ctggacgaaa acaaatcaag aaacagcaaa      3600
     tgaactttgt cgtcatctag aagatgtttt caaacctgat aactccgctc cccttgaact      3660
     acaccccgac caggaaatat taaaaactaa acccaaagat gtagttgaaa tttcagaaat      3720
     cagtcattca gaggtggccg acattatcaa gtataaaata aacattcaca aatctcctgg      3780
     ccttgatttg gtcactgggc aaatgttaaa acaactccca tcactggctc acaaaaaact      3840
     tgccgatata tataatgcag ccctgaagct caaatatatc ccccttgcct ggaaaaaagc      3900
     agacgtgatt tgcactcata aaaaaaataa acctcgccat ctagcttcat cttatagacc      3960
     aatctctctc ttggcgatta taggaaaggt gtttgaacga ttgtatctta agcgcctgct      4020
     cccaatcgtg gatgaaatga agataatccc gccgcaccag tttggcttcc gtaggaagca      4080
     ctcaacagtg gagcaaattc atagattcat caattttatc aataaaacta tggaacgcgg      4140
     actggtgtgt gcgacagcct tccttgatat acaagcagcc tttgataaag tctggattga      4200
     ggggctggct cttaagatat atcggagtct tccctataat cactatgaga ttctgagaaa      4260
     ctatctctct gacaggtcat ttcgggtaag atatgaagac gcggtctctg attttacccc      4320
     aatattagct tctgtccctc aaggttcagt acttggcccc ctactttttc taatatatct      4380
     tgcagatttc cctaaattaa gaagaactaa aaaaggtaaa tttgccgatg acacagctct      4440
     cggaactttc ggttcaacac cccgagaagc caacaaatat cttcaatcca gcctaaataa      4500
     aacagcaaaa ttctgctcaa aatggaaaat caccttaaat agtaggaaat cacaacatac      4560
     agttttctca ctcaataaag accctgtcac ggaagtgagg ctagatggcg agactattcc      4620
     tcagaaaaag actgctaact accttggtgt gttgttggac aggcatttga cctacagacg      4680
     gcacatcatg gctaaaaagt tgcagattct taataaatat aaaaaactgt ggtggctgct      4740
     cagacctggg agcggactct caacatacaa caaattgtta atatataaag tcgtgctcaa      4800
     acccatatgg acatatgcct gtcctctatg gggatgtgca aaaaaatcta atattaatga      4860
     aattcaaact gctgacaacg taatcctcag aggtctctca ggagtgagat gggacgatta      4920
     tattcccaac aaaatggtac gtcatctcct gggagttcct actgttaagg aaactattaa      4980
     acaatattcg ttgaggtacg ctaccaggct gagcaatcac cccaacgaca aagctgctaa      5040
     tttactttat aaatataaag ccggaccgag gcgactcaat cggaaacatc cgttcgattg      5100
     tgtctcgagt gaggtaatta aactaatgag tgaatgaatc acctctgttt cggtccaggc      5160
     ccaataatac taatctctta ttctatagcc ggtagtgatg acgcgtgatt tgacctagta      5220
     agggagcctt gacattcgtc acaacgcagc gcccacgatg cgtggtgttt acgagagctt      5280
     atccgttcaa tgtgtacatt gaacccataa gttcctaata agccgcgtat gggtgggtgt      5340
     ggcgttgtga ttaccaggcg tggggtttgc tgcacctaga aagggctact tagtgggttg      5400
     agaattcgcg ttagcactat gtgtggtagg gccgtggacc ttttataaca aaaactaatt      5460
     tgtctgactc tcctcttacc cttgcctaac accctgtatt ccatgtcaat cttctcaaga      5520
     cacatctctt tttatatatt tctaggctct ttacaccacc cctgtttaaa attcacttta      5580
     tcagttttat tctagctatt ataactatta gctattattt acccactgca aataaaagac      5640
     accaacttct actcttactt tttttctcaa ttttagtgct ttaccaactt tgcacttcta      5700
     gtgtccatgt aaatttgcag tctaaaatta aacagtaagc cttaaaataa gtgtcttaaa      5760
     ttaggtatag gtaaatttaa ggtaaataat aaaaagacat tttgtcttta aaacatatat      5820
     ttaacatcat ataataatta caatgtgtat atagtgcccc actgtatata accctccctt      5880
     tacccctatc ctggggacac cttatcttaa taacactagt cttaagtcta tttacattta      5940
     gtcttaagtc tagtttttaa ttatattgta aatattctaa ttactgtgta agtaggtgaa      6000
     tgttattaaa ataaaaaaaa aaaaaaaaaa aaaaaa                                6036
//
ID   Jockey-11_DAn repbase;    DNA;    INV; 4634 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4634
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 392-392 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           205..1530
FT                 /product="Jockey-11_DAn_1p"
FT                 /translation="MPSRQIKPTACAHSFKEIRAAPLPAVPNINNNNMNES
FT                 KLSVPETERRRSSNAYFSFVANEERARSCSPALPGTSSALTWSAQCTSPAL
FT                 SPSGLSTPLYLPTTSTTTSITTSCTSTTTATSVAVSQPPRATIQTGIDRYI
FT                 QVKRKLSPQPKKNANAAKAMKVNNQDEPINSLSENRFSILSEDSNNEENTE
FT                 VPKAKQKPPPIYIRDQNCSDMVNCLAKLIGNNNFHIMPLTKGNIRETKLQV
FT                 YTEENHRLATKYLYDNQKKYYTYQLKSSKGLQVVIKGIESSVPTKEIIEAL
FT                 SSAGFKVKGAINIINRQKVPQPMFKVELQPETKTTPKNMIHPIYKLQYLLH
FT                 RRITVEEPHKRNQPLQCSNCQEYGHSKSYCTLRAVCVACGGLHNTAFCTIN
FT                 KTDHNSKKCGNCGGNHTANYRGCPVYKELKYRMNTKKTLTTTFVCHSH"
FT   CDS           1844..4495
FT                 /product="Jockey-11_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAYLRICLWNANGISKRKNELKTFLDDNNIDIMLLSE
FT                 THLTNKNNFYLTGYIFHATNHPDGKAHGGTGILIKQRIKHHSLQRVATNSL
FT                 QSTSIRIQTVGGHLNLAAIYCPPRFCISDMEFMQFFDTLGDCFIAGGDYNA
FT                 KHPHWGSRLTNPKGRQLYNALIQPGNKLDFLSPGKPTYWPADPRKKPDLID
FT                 FAITRKIPRSIIRAEPLDDLSSDHSVVLLHLFQHAELQNNQIYLTSKRTNW
FT                 LRYKKYISSHINIRPSINCSKDIQDAVNHLEDMMTSAAKLSTPATTEKPPY
FT                 SATNSYIENLVREKRQLRREWQAHRSPSSKERLKTATRRLTKVLRSREELA
FT                 QKSYIEQLSPKSTRCPLWKAHPNLKPPIEADMPLRKPDGSWARSDEEKASV
FT                 FASHLCKVFTPNQAASPFILPELPIPDPIPAIEFQTTEITKVIKEHLKPNK
FT                 SPGYDLIAPKMIMELPACAINYIKILFNSITKLGHFPQQWKKSIIIMIPKP
FT                 GKDKALASSYRPISLLSCLSKLFEKLLLLRITPHMTSNNIIPEHQFGFREK
FT                 HGTIEQVNRITSEIRTAYEQREYCSAIFLDISQAFDRVWLQGLMYKIKLLL
FT                 PQNCHELLKTYLLNRVFTVKKKNFTTEEFEIKAGVPQGSVLGPTLYLLYTA
FT                 DIPTDQRLTMSTFADDTAILKRSKCPLEASRSLSSHLALIEKWMADWRIKI
FT                 NGEKSKHITFTLNRQNCPAPTLNNTIVPSVNEVTYLGVHLDRRLTWKKHIE
FT                 AKRDQLRHKSRGLHWLINPRSPLLLEYKVLLYNSVIKPIWKYGSELWGNAS
FT                 SSNIDVIQRAQSKVLRTITGAPWYIRNEDIHRDLGIPLVKVEISQLQEKYK
FT                 RKLSTHQNPLARSLNQVSQQSRLRRNDLPAR"
XX
SQ   Sequence 4634 BP; 1609 A; 1146 C; 820 G; 1057 T; 2 other;
     tgaatccaat cgtcagagag agtggacgtg tttctgtgct gctccgccag cagctatgca        60
     aatacmagaa aactcagtga aaaagcaaaa gaagtggtgt gctctagaaa tcgcgaaagg       120
     acgcttttgg acacacataa gtctcgagct tatagtgtcc aataactaac acaaaatcaa       180
     aatttattaa attcaaaaat tgaaatgcca tcacgacaaa ttaaaccaac agcttgtgca       240
     cattcattta aagaaataag agcggccccc ctgcctgcag tacctaacat aaacaacaac       300
     aacatgaacg aaagtaagct ctctgtccca gaaacagagc gtagacgatc ttccaatgcc       360
     tatttctcat tcgtcgcaaa cgaagagcgt gcaagatcat gctctcccgc tctcccaggc       420
     acaagcagtg cattaacctg gagtgcgcag tgcacctccc cagcactatc accctctggt       480
     ctatcaactc cgttatattt gcctacaacg agcactacta catcgattac cacatcgtgt       540
     acatcaacca caacagcaac atcggtagct gtctctcagc ccccccgagc aacaatccaa       600
     acgggcattg accgatatat ccaagtaaaa cgaaagctca gtccccagcc gaaaaaaaat       660
     gctaacgctg caaaagcaat gaaagtcaac aatcaagacg aaccgattaa ttctctgtct       720
     gaaaacagat tttctatatt aagcgaagac agtaataatg aagagaatac ggaagttccc       780
     aaagccaagc aaaagccscc acccatttac atacgtgatc aaaactgcag cgatatggta       840
     aactgtctcg ctaagctaat tggaaataac aattttcata taatgccact gaccaagggc       900
     aatatacggg agaccaagct ccaagtctac acggaggaaa atcatcgctt agccacgaaa       960
     tacctatacg acaaccagaa aaaatattac acctaccaat tgaagagcag caagggcctt      1020
     caagtggtca taaagggtat tgaatcgtcg gtaccaacaa aagaaatcat cgaagccctt      1080
     tcaagcgcag gttttaaagt taagggagcc attaatatca tcaacagaca aaaagtcccc      1140
     cagcctatgt tcaaagttga gctgcaacct gaaacgaaaa caactcctaa aaatatgatt      1200
     catcccatat acaaactaca gtatcttctg catagaagaa tcacggtaga ggaacctcat      1260
     aagcgcaacc aacctctaca gtgttcaaac tgccaagaat atggacactc aaagtcgtac      1320
     tgcaccttgc gtgcagtctg tgtggcttgt ggcggcctcc ataacactgc cttctgtacc      1380
     ataaataaaa ccgaccataa ctctaagaaa tgtggcaact gcggtggaaa tcatactgcc      1440
     aattacaggg gatgcccagt ttataaagag ctaaaatatc gtatgaatac aaaaaaaacc      1500
     cttacaacaa cgttcgtttg ccattcacac taaccaccaa accaccacgg catctttgac      1560
     tacacctgga gtttctttct ctagcgctct acgatggcca ggactactaa atagtgtagg      1620
     ttcagcacca ctggaacctg aaactatagg atatccacct ccgcctacgg gtactacgag      1680
     ggaaagagta ggccaagaat ctgcaacccc cgaaataaag ggtatcgaag gaatgttgtc      1740
     cacacttata agtctaatgg tcacaatgca aaataatatg caggagctca tgcgaaacca      1800
     aaatcgacta atggagcttt tagtcaaaca aaaatccaat tagatggctt atttgagaat      1860
     ctgtctatgg aatgctaacg gcatttcaaa gcgcaaaaat gaacttaaga catttcttga      1920
     tgataataat atcgatatta tgctcctctc cgaaactcat ctaacgaaca aaaacaactt      1980
     ctatctgacg ggctatatat ttcatgcaac aaatcatcca gatgggaagg ctcatggagg      2040
     aactgggatc ctcataaagc agcgcataaa acaccattcc ctccaacgag ttgctacaaa      2100
     ttccttgcag tcaacttcaa tacgaattca gaccgtggga ggtcatctaa acctagctgc      2160
     aatatactgc ccaccacgtt tctgcatatc tgatatggag tttatgcaat tctttgatac      2220
     actaggcgat tgctttatag caggcggcga ctacaatgcc aagcaccctc actggggttc      2280
     tcgcctaacc aacccaaagg gtagacaact atacaacgct ttgatacagc caggaaataa      2340
     actagacttt ctatcaccgg gaaagcctac atactggcca gcggacccac ggaagaagcc      2400
     agacctaatt gactttgcga tcactagaaa aattccacga agcatcattc gagccgaacc      2460
     tttggatgac ctatcgtctg accattcagt tgtccttctt catctatttc aacatgccga      2520
     attacaaaat aatcaaattt atctcacatc aaaaaggaca aactggctta ggtacaaaaa      2580
     gtacataagc tctcacataa acataagacc gtcaattaac tgtagcaagg acattcaaga      2640
     tgcagtcaac cacctggaag acatgatgac ctcagcagca aagctctcga ctcctgcgac      2700
     cacagaaaaa cctccatact ccgccacaaa ttcctatata gaaaatctag tccgagaaaa      2760
     gcggcagctc cgccgtgaat ggcaggcaca cagatcccct tcttcaaagg aaaggctaaa      2820
     aacagcgaca cgaaggctca caaaggtcct acggagcaga gaagaacttg ctcaaaaatc      2880
     atacatagaa cagctttccc caaaaagtac caggtgtcct ctatggaaag cccatcctaa      2940
     cttaaagccg cccatagaag cagatatgcc ccttcgaaaa ccagatggat cttgggcgcg      3000
     cagcgatgaa gaaaaagcaa gcgtcttcgc tagtcacctt tgtaaagttt ttactccaaa      3060
     tcaagcagcc tctcctttca ttcttccaga gctaccaatt ccagatccaa ttccagctat      3120
     agaatttcaa acaactgaaa tcactaaggt catcaaagag cacctcaagc caaataagtc      3180
     tccagggtat gacctcattg cgccgaaaat gattatggag ctccctgcgt gcgccatcaa      3240
     ttatataaaa attctattta actctattac aaagcttggc cacttccccc aacaatggaa      3300
     aaaatccatt ataataatga taccgaaacc agggaaagac aaagctttgg cctcttcata      3360
     tagaccaata agtctacttt catgcttatc aaagcttttt gagaaacttc tactgctccg      3420
     tatcacgcct catatgactt cgaataatat aatccctgaa catcaatttg gcttccgaga      3480
     aaagcatggc accatagagc aggtgaaccg tatcacatct gaaattcgaa ccgcctatga      3540
     acagcgagaa tactgttctg ctatatttct ggacatatcc caggcatttg accgagtctg      3600
     gctgcaagga cttatgtata aaataaaact attactccca caaaactgtc atgagctgct      3660
     caaaacatac ctgcttaatc gagtgttcac tgtaaaaaaa aaaaacttta caacagaaga      3720
     gttcgaaatt aaggcgggcg taccccaagg aagcgtcctc ggccccaccc tatatcttct      3780
     atatacagca gatatcccaa cagaccagcg tctaactatg tcaacatttg ccgatgatac      3840
     agccatacta aaaagatcta aatgcccgct ggaggcatcc agaagcctct cctctcacct      3900
     tgcactaata gaaaagtgga tggcggactg gcgtataaag ataaacggtg aaaaatctaa      3960
     acacattacc tttactctca acagacaaaa ctgccccgct ccaactctaa acaataccat      4020
     agtcccctct gtgaatgagg tcacatatct cggcgtccac ctggacaggc gtcttacatg      4080
     gaaaaaacat attgaagcga aacgggacca attaagacat aaatccagag gactgcactg      4140
     gcttatcaac cctcgttccc cacttctact ggaatataaa gtactactct acaattcagt      4200
     cataaagcct atctggaagt atggctccga actttggggc aatgcaagca gtagcaatat      4260
     agacgttatc caaagggcac agtctaaagt gctcagaacc atcacaggag ctccatggta      4320
     tattcgcaat gaagatatcc atagagacct aggtatacct ctcgtcaaag tcgaaatttc      4380
     tcaactccag gaaaaataca aaaggaaact ctccacgcac caaaatcctc tagccagatc      4440
     gctaaaccaa gttagtcaac aatcccgatt aagaagaaat gaccttccag cccgttgaca      4500
     tcggaggccc catagtatag atgtttacaa agataaacta attatgtatt agattaagat      4560
     ttttaaaatt gttgttagtc tcttaataag agaagatcca acaaataaaa gataaaagta      4620
     taaaaaaaaa aaaa                                                        4634
//
ID   Jockey-11_DBp repbase;    DNA;    INV; 3752 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3752
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 718-718 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..765
FT                 /product="Jockey-11_DBp_1p"
FT                 /translation="KPPPIFIPDVSNIAALISCIEDIVGKKKDFSYKAARD
FT                 NQLRIMMPDKESYSALKSHLDSAGKRYYTFQHKEDRAYRVVVKGLHHTTDI
FT                 DDIKADFRRQGHVVRDVRNAVGHISKTPMSIFFVNLEPSSNNKEIFNVKRV
FT                 CHSVVTVEPPRNFHDVPQCYRCQGFGHSQRYCKLQHRCVKCSDHHSTSECK
FT                 KTREEAAKCVHCHGAHPASYKGCPAYKKAKACMAPKEPRPPQPRRLAYPPP
FT                 QPYPITDTTSQKLC"
FT   CDS           920..3526
FT                 /product="Jockey-11_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="APSSLKYAANRPAVAFWNANGLVQNRLEVEHFIAETH
FT                 FTHKPFLKLHGYDVIHADHPSGRGHGGAAIIVKASIDYNDIAILKDTQFDL
FT                 LLSDMGDKFIVAGDFNAKXPWWGSRVSNPKGTALFKCIQRRAYNCHSTGEP
FT                 TYWPTDPQRLPDLLDFAISHGIHPDSIACSANKDLFSDHSAVELHINTPVE
FT                 KKVTRLRMIRPRTSIESYSEWMENALESAQPDLSTGAGIDQAVENLTQEMH
FT                 NAALIATPRAPCNNRKLQRHLHLWSPEVAALLNEKRRRRRIWFQTRYPSDK
FT                 TAFNRATKKLKKLLQRLRTCAFEEYLRQVEPGDPQHNLWNLTRHLKRPKQR
FT                 VAQIRKSDGGWCRSDQERADAFAAHLEAAFKPFNMCTEEDRAETEFVLALP
FT                 PTDLSQMEPVSEEEVKEEVSGLNAKKSPGADGIEALAVKLLPPSGIRRLTR
FT                 IYNACLESGHFPTCWKQAEVILIPKPGKPETNLASYRPISLLSVISKILER
FT                 VFLRRLQTVLDDAGLIPDHQFGFRRSHSTPEQCHRIVAKILDSLERKHYCC
FT                 AVFLDVKQAFDRVWHPGLKAKLKRNLPQQYYDFLNSYLTDRKFRVRSGNAT
FT                 SEYRPIEAGVPQGSVLGPILYTMYTADMPVAEEEGLLVATYADDTAFLASS
FT                 ILPEEASARLQRQLDILDPWLRRWNIAVNHEKSGQTTFTMRRGDCPGVSLG
FT                 GTPIPASPTPKYLGMTLDRRLTWKTHLLRKRTQIRIKLRQLNWLIGRRSRL
FT                 KQRVKLLIYKAIVKPVWTYGIQLWGTACLSNRRIIQIAQNKALRTLTGAHP
FT                 FHDNATIHAQLRVPYVSEEVQRFANRYVERLDRHPNPEAINLLDNSYTTRR
FT                 LKRTHPLDLCHSGERD"
XX
SQ   Sequence 3752 BP; 1077 A; 992 C; 908 G; 773 T; 2 other;
     aagccaccac cgatttttat cccagatgtc tctaacattg ctgctctaat ttcctgcatc        60
     gaggacatcg ttggcaaaaa gaaggacttc tcctacaaag ccgccagaga caatcagttg       120
     aggattatga tgccggataa ggagtcgtac tctgccctca aatcccacct cgatagtgcc       180
     gggaaaaggt actatacgtt ccagcacaag gaagatagag cctatcgagt tgttgtgaaa       240
     ggtctgcatc ataccactga catcgatgac attaaagcgg acttccggcg acaaggacac       300
     gtggtccgag atgtgcgcaa tgccgtaggg cacatctcca aaacaccgat gtcgatcttc       360
     tttgtcaatc tggagccgtc cagcaacaat aaggagatct tcaatgtcaa gagagtctgc       420
     cactctgtgg tcactgtcga acctccacgc aatttccatg atgtgccgca atgctaccgg       480
     tgccaaggat ttgggcacag tcagcgatac tgcaagctgc agcatcgctg tgttaaatgc       540
     agcgatcatc acagcacaag cgagtgtaag aagacacgtg aggaagcggc taaatgcgtg       600
     cactgtcacg gggcccatcc tgcgtcgtac aaaggatgtc cggcttacaa gaaagccaag       660
     gcctgcatgg ctcctaagga accacgacca cctcaaccac gccgcttagc gtacccaccc       720
     cctcagccat atccaattac ggacaccaca agccagaagc tatgctgaca tagttaaagg       780
     aggagcctgg ccttcacaga caccagcgac agcacagggg atgccacagg cagaccagat       840
     ggcggcattt atgacgaggg tggaaaacct tcttgagaga gtaatggaca aaatattcga       900
     ggaatgacag ctatgatgag ctccatcctc tctcaagtat gcagcaaata ggcctgccgt       960
     agccttttgg aacgctaacg gacttgtcca aaacaggctt gaggtggaac attttatagc      1020
     agaaacccat ttcacccata agccattcct gaaattgcac ggatatgacg taatacatgc      1080
     agaccatcct agcggaagag gacacggagg agcggcgatc atagtcaagg ccagcattga      1140
     ctacaacgac atagcaatac tcaaggatac ccagttcgac ctcctgctga gtgatatggg      1200
     cgacaaattc atcgtcgcag gagactttaa cgccaagnat ccttggtggg gctcgagagt      1260
     gagtaatccc aaaggtactg cattattcaa atgcatacag cgcagagcct ataactgcca      1320
     ttcaactgga gagcccacgt attggcccac agacccccaa cgactgccgg accttctcga      1380
     cttcgccatc tcccatggaa tccatccgga ctccatagcc tgctcggcaa ataaagatct      1440
     cttctctgat cacagtgcgg tggaactcca cattaacacc cctgtagaga agaaagtcac      1500
     ccgactcagg atgatcagac ctcgcaccag catagagagc tactccgagt ggatggagaa      1560
     cgccctagag agcgcgcagc cagaccttag cacgggtgct ggtatcgatc aggctgttga      1620
     gaatctcact caagagatgc acaacgctgc cttaattgca actcctaggg ctccatgcaa      1680
     caataggaag ttgcaaaggc atttacacct gtggtctcct gaagtggctg cactcctcaa      1740
     tgagaagaga cgacggagaa ggatttggtt ccaaaccagg taccccagcg ataaaacagc      1800
     tttcaatcgt gcaaccaaaa aactcaagaa gctgctgcag aggttgcgga cttgcgcatt      1860
     cgaagagtac ctgcgccagg tcgagcctgg ggacccccaa cacaacttgt ggaacttaac      1920
     ccgccattta aagcgtccca agcaaagggt cgcccaaata cgaaaatccg acggtggatg      1980
     gtgtcgttcg gatcaggaaa gggccgatgc ttttgctgct cacctcgaag cagccttcaa      2040
     gccattcaac atgtgcacgg aagaggacag agcagaaacg gagttcgtac tggccctacc      2100
     acccacggac cttagccaga tggagcccgt atcggaggaa gaggtcaagg aggaggtgtc      2160
     aggcctcaac gccaaaaaat ctccgggtgc agatgggata gaggcactcg cggtcaagct      2220
     tctcccacct tcaggaataa ggaggctcac aaggatctat aatgcgtgcc tagagagtgg      2280
     acacttcccc acttgctgga aacaggcgga ggtcatcctg atccctaagc ctggaaagcc      2340
     tgaaactaat ctcgcctcat ataggccgat tagtttactg tctgtaatct ccaaaatact      2400
     cgagagagta tttttgcgca gattgcagac agtactggac gatgctggtt tgatcccaga      2460
     tcaccagttt ggtttcaggc gctcccactc cacccccgag caatgccaca ggatcgtggc      2520
     aaaaatcctg gacagcctcg aaagaaaaca ttactgctgt gctgttttcc tggatgtcaa      2580
     gcaggcgttt gacagggtct ggcaccctgg tctaaaagcg aagctcaaga ggaacctgcc      2640
     acaacagtat tacgatttcc ttaactcgta cttgaccgac aggaagttca gggtcagaag      2700
     cggaaatgcg acatcggagt acaggcccat tgaagctgga gttccgcagg gcagtgtact      2760
     tggtcccatc ctgtacacca tgtacacagc cgacatgcct gtcgctgaag aggagggcct      2820
     tctagtggct acwtatgccg acgacacggc atttttggcc tcttcaatct tgccagagga      2880
     ggcttctgca agactccaac gccagctgga catcctcgac ccgtggcttc gaaggtggaa      2940
     catcgccgtc aaccatgaga agtcaggcca aacgacgttt acaatgagga gaggcgactg      3000
     tcctggagtc agtctcggag gcaccccaat tccagccagc cctacaccca aatatctggg      3060
     tatgaccctg gatagaaggc tcacctggaa aactcacttg ctgcgcaaac ggacgcaaat      3120
     ccggatcaag ctacgtcagc tcaactggct cattggaagg aggtccagac tgaagcaaag      3180
     agtcaagctc cttatatata aggccattgt aaagccagtc tggacctatg gtatccagct      3240
     atgggggacg gcgtgtctaa gcaaccgaag gatcatccag atcgcccaaa acaaggccct      3300
     aagaacttta actggagctc atccgttcca cgacaatgcg acaatccacg cccaactgag      3360
     agtcccatat gtgagcgaag aagttcagcg attcgccaac aggtacgtgg aaaggctgga      3420
     ccgacatcct aaccctgagg ccatcaatct tttggacaac agctacacca caaggaggct      3480
     gaaacggacc cacccactgg acctctgcca ctcgggcgaa cgggactgag ctgcatttag      3540
     accacaggcc cactaaaggg cccgacataa taacttgaat tgtatcgcta aggcttactg      3600
     ttaaaattag tttcctagga taagcaaaca ttgtactact caatatttca ttaagttaag      3660
     gtcccattat aaaatttaat tattgtccat aactccggac agattttaaa tataactatt      3720
     gattgattga taataaaaaa aaaaaaaaaa aa                                    3752
//
ID   Jockey-11_DEl repbase;    DNA;    INV; 4540 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4540
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4604-4604 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1527..4379
FT                 /product="Jockey-11_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="EAPAASSTRSHPRLHDGSYDVTNGRSFGKDDGPGIQA
FT                 NDGDVHLHPCQGLQIGLRIALWNANGLISSRPEVEHFVHTNNIDILLISET
FT                 HFTSRSYIRLHGYDLVHADHPNGSARGGAAIIIKSGIKFNELATLQEDWVQ
FT                 CAKINLPSPLGDLTIAAAYLPPRHRVSEEHFELLLSSLGNRFLIGGDFNAK
FT                 HQWWGCRVNNPKGSALLRCMQRNGINCHSTGEPTYWPTDTLKLPDILDIAL
FT                 SKGFDRSKVSCSSNADLFSDHSAVELRLNLPALRKGARIRMIRKSTCPAAY
FT                 KAWMTENIDPLQELTTTEQIDAAIIELTQQMCNAATHASPRIPTTPRPPTR
FT                 DLHLWSPDVAALVAEKRRLRRVWFLSRNPRDKSAFNRAAKQLKEELLRLRQ
FT                 SAFEEFLANVEPGDPQHNLWRVTRHIKRPTRRAAPVKRANGDWCRTELDQA
FT                 EAFAEHLRSTFTPIIRCSELDIAETDRVLGSSINDDSSRTTLDHVTAEEIE
FT                 LEVKGLNTNKSPGADGIEALAIKLLPAPCFQMLANTFNRCFQLGHFPTPWK
FT                 TAEVIMIHKPGKPEANLASYRPISLLAILSKILERVFLRRVLPVLDEAELI
FT                 PDHQFGFRRSHSTPEQCHRLVRAILEAFEEKKYCCAVLLDVKQAFDRVWHP
FT                 GLLQKIKRKLPHSHYAFVRSYLEGRTFHVRCGETRSTTKDIKAGVPQGSVL
FT                 GPVLYTIFTADLPIIVENRLIVATYADDTAFLATADLPQEASNILQRQLNA
FT                 LEPWLSRWNITVNAEKSTQTTFALRPGNCPPVSLNGEAIPDDPTPKYLGMT
FT                 LDRRLTWRAHILRKRKQAEERLRQYQWLIGRRSTLRVNVKLLVYKAIIKPI
FT                 WTYGIQLWGTASMSNRRSIQRLQNKALRMVSRAHPYHDNQTIHEVLGVPRV
FT                 TEEIKKFSQKYVNRLYNHPNVLAIDILDNSQTIRRLRRTHPLDLVLD"
FT   CDS           join(377..829,801..1523)
FT                 /product="Jockey-11_DEl_1p"
FT                 /translation="MDWQAAPSDRLPSKTGNNNNKRKKKNSSXDDSDSSGS
FT                 LESGEIKRKPVRKTTQLAASVLPEGPSTSKAARAALXSNRFAALSSDDXDE
FT                 EVEDNEEXTPTDEELKMXLGKAMKSTXKKRVXEPKVIRPPPIFIPDVTNFK
FT                 ALTKSISYRPWQPNQLATVLGNNVEVTYKATRNNNVRVMTQDKASFSALKA
FT                 FLNVNNKRYHTFQPRDERAYRIVIKGLHYSTELDDIKAELHSQGHKVRDLY
FT                 NLTQKVTKKPLNIFFVNLEPAKNNKEAYQVKRLCSSVVTIEPPIKFNDVPQ
FT                 CYRCQGFGHTQSYCHLEERCVKCGAGHSSTDCTKSASEPAYCLHCQGPHPA
FT                 SYKGCPAYKKAKSLLAPRQPAPRAQQPAKSRMVRPLHQLCQRGKELCSP"
XX
SQ   Sequence 4540 BP; 1286 A; 1257 C; 1045 G; 925 T; 27 other;
     cagtcgcgat cgaactctcg tcgagwacag acgtgcctac ggaccgccgc gaacgcgaac        60
     acgcgaacaa agcaaacaag acaaatcgtc aacaacatca waacawccgm tacaacaacc       120
     gttacgktgt cagcmagctg cgctgtgatt ggccactgct atcgcgtgac caagccacag       180
     cgwgaacttt ttgcgtgcmg tgtgcawaag caccggcaca catacacaca cwcacacgca       240
     agcgcctgtg cgtgttatct tttcgtgcta ctgttcagcc aacaacaaca acacagccaa       300
     gcgcaaacag tttaagcttg ccttacaggc agcttactcg ctcccccccc cctcccccgc       360
     tctcctcacc ctcgccatgg attggcaagc tgcgcctagt gacaggctgc caagcaagac       420
     gggcaacaac aacaacaaga ggaagaagaa gaactcttca gsagacgact cggactcctc       480
     tggatcwctc gaatctgggg aaattaagcg caaacccgtw cgkaaaacta ctcaactcgc       540
     agcatcggtc ttgcctgagg gaccaagcac cagcaaagca gcwagggcgg ccctgkacag       600
     taacaggttt gcagcactct cttctgatga cgawgatgaa gaggtagagg acaacgagga       660
     gwatacgccc acagacgagg agctgaagat ggwactgggc aaggcaatga aatccacmmt       720
     caaaaagcga gtcgamgagc ccaaggtcat cagaccaccc ccgatattta tacctgatgt       780
     gaccaacttc aaagccctga ccaaatcaat tagctaccgt ccttggcaat aacgttgagg       840
     tcacatacaa ggcgaccagg aacaacaatg tcagagtcat gacacaagac aaggcaagtt       900
     tctccgctct gaaggcattc ctcaacgtga acaacaagcg ataccacaca tttcagcccc       960
     gtgatgaacg cgcctaccgc atcgttatta aaggcctcca ctactccacc gagctagatg      1020
     acatcaaagc agaacttcac agccaagggc acaaggttag agatctgtac aacctcaccc      1080
     aaaaagtcac taagaaacca cttaacattt tctttgtgaa cctcgagccg gctaaaaaca      1140
     acaaagaggc ctaccaggtt aagcgtctct gcagctcagt ggtgaccata gagcccccaa      1200
     tcaaattcaa tgatgtgccc cagtgctatc gctgtcaggg gttcgggcac acccagagtt      1260
     actgccatct mgaggagaga tgcgttaaat gcggagccgg tcactcctcs acggactgca      1320
     ctaagagcgc cagcgaacca gcgtactgcc tgcactgcca aggcccacat cctgcctcct      1380
     acaaaggctg ccctgcatac aagaaggcca aaagtctgct agctcctagg cagccagccc      1440
     ctagggccca acaacccgcc aaatctcgca tggttagacc cctccatcag ctttgccaac      1500
     gcggcaagga attgtgtagc ccctgagaag ccccagcagc aagctccacc cgaagccacc      1560
     caagactcca tgatggcagc tatgatgtca cgaatggaag gtcttttgga aaagatgatg      1620
     gaccgggtat tcaagcaaat gacggagatg ttcacctcca tccttgccaa ggtctgcaaa      1680
     taggcctgcg catagcactt tggaacgcga acggcctgat aagtagcagg ccagaggtgg      1740
     aacattttgt ccacaccaac aatatagaca tactcctcat atccgaaacc cattttacca      1800
     gcagatccta catccggctt cacggttacg accttgttca cgctgaccat cccaacggta      1860
     gtgcacgcgg cggagcggct ataataataa aatcagggat taaattcaat gagctggcaa      1920
     ccctgcaaga agactgggtt cagtgcgcca aaataaacct ccccagccct cttggagatc      1980
     taaccattgc tgcagcatac ctccctccca gacacagggt gtctgaagaa cacttcgaac      2040
     tactgctgag tagtttggga aatagatttt taattggagg tgactttaac gccaaacacc      2100
     aatggtgggg atgtcgggtt aataacccta aaggtagtgc tctgcttcga tgcatgcaac      2160
     gaaacggcat aaattgccac agcactggtg agcccactta ttggccaact gacacattga      2220
     agcttccgga cattctggat attgccctct ccaaaggctt tgatcgctcc aaagtctcgt      2280
     gctcttcaaa cgcggacctc ttttctgatc acagtgcagt cgaactgcgc ctaaatcttc      2340
     cggcacttag gaaaggtgcg cggatcagaa tgatcagaaa gagtacgtgt ccggctgcct      2400
     ataaagcatg gatgacagag aacatcgacc ctctccaaga gctcactacc accgagcaga      2460
     ttgacgctgc cattatagaa ctgacgcagc agatgtgcaa cgctgctaca catgcatcgc      2520
     cgagaattcc caccacaccc agaccaccca ctagggacct gcatctctgg tctcctgacg      2580
     ttgctgcact ggttgcagaa aagaggcggc tcagaagagt ctggtttctg tccagaaacc      2640
     cgagggataa gagcgccttt aatagagccg ctaagcagct aaaggaagaa ctactcaggc      2700
     tcaggcagag cgcgtttgag gaattcctgg ccaacgttga acctggcgat ccgcaacata      2760
     atctctggcg agtcactcga cacataaagc ggccgacacg acgggctgct cctgttaaac      2820
     gtgccaatgg agactggtgt cgcaccgaac tggatcaagc cgaggcattt gctgagcacc      2880
     tgcgttcgac tttcacgcca attataaggt gcagtgagct tgacattgct gaaactgatc      2940
     gtgtccttgg cagcagcatc aatgatgaca gcagtagaac cacgttggac catgtaactg      3000
     ctgaagagat tgaactggag gtgaaaggcc taaatacaaa caaatcgcct ggcgctgatg      3060
     gcatcgaagc gcttgctatc aagctccttc cagctccttg cttccaaatg ctggccaaca      3120
     cgttcaacag gtgcttccaa ttgggtcatt ttccaacccc atggaaaaca gcagaggtga      3180
     tcatgattca caaacccggt aagcctgaag caaaccttgc atcgtatcgt ccgatcagtt      3240
     tgctggcgat actctccaaa atactcgaaa gagtattttt gcgtagagtg ttgccagttc      3300
     tggatgaggc tgaactgatc ccggatcatc agtttggctt caggcgttcc cactcmacac      3360
     cggaacagtg ccatcgcctg gttcgagcca tccttgaagc gttcgaggaa aagaaatact      3420
     gctgtgctgt tttactggat gttaagcagg cttttgaccg tgtctggcac cctgggctgc      3480
     tgcagaaaat taagagaaaa ctaccacact ctcactacgc cttcgtccgc tcgtaccttg      3540
     agggcaggac ttttcacgta agatgcggcg agactaggtc gacaactaaa gacattaaag      3600
     ccggggtacc tcaaggcagc gtgttggggc ctgtgcttta cacgatattc acggcggacc      3660
     tacccatcat agtcgaaaat cgtctcattg tcgccaccta cgcggacgat actgccttcc      3720
     tcgccactgc agacctccct caggaagcct cgaatatact gcagaggcag ttaaatgccc      3780
     tcgagccctg gctaagtagg tggaacatca ctgtgaacgc cgagaaatcc acacaaacta      3840
     cgttcgcgct acgacccggg aactgcccgc ctgttagcct caatggggag gccatccccg      3900
     atgaccctac accaaagtac ttgggtatga cactcgacag gcggctgaca tggcgcgccc      3960
     atatactgcg caaaagaaaa caggcggagg aaagattgcg acagtaccag tggctgattg      4020
     ggaggcgatc tacgctgaga gtaaatgtta agctsctagt atacaaagca atcatcaagc      4080
     caatctggac ttacggcatc cagctatggg gtactgccag tatgtcaaac cgcaggtcaa      4140
     tccaaaggct acagaacaag gctctgcgga tggtctcgcg tgcccacccg taccacgaca      4200
     accagaccat tcacgaggta cttggcgtcc cccgggtcac tgaggaaatc aaaaagttca      4260
     gccaaaaata cgtcaatagg ctgtacaatc atcccaatgt ccttgccatt gacatcctgg      4320
     acaacagcca aactataaga agactccgaa gaacccaccc gttggacctc gtattggact      4380
     aggatctgca atctagtccc tcctgctatt tgttaattgc taatacataa aatttatcta      4440
     ttgtgaaatg cgaatgtaac atccctaaaa tttaattatt gtccaasttg ggcagatttt      4500
     aaataaatca catgatcctg ataaaaaaaa aaaaaaaaaa                            4540
//
ID   Jockey-11_DF repbase;    DNA;    INV; 3138 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3138
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 979-979 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3138 BP; 927 A; 846 C; 733 G; 616 T; 16 other;
     atcggacact cgacgtgcct wcggaccgca gcaaagsgta catccaaaac aacaacaacg        60
     acactgtttt gcgataagcc cgagcttatc tcgttaagcg cgctctgatt ggcgtgatca       120
     agccgcgcgc gtaaacaaca catacacacg tgcaatttat tgtgcgtgtt ggcaaagcag       180
     ataaggcaga aggtgaaaac cgcacaccga gcccaagtag cgtggcctgc cacccggkca       240
     gcttawctgc tcccgcttcc actcccccta tggagatgga ctggcaagcg cctccccgtc       300
     cgtcccgtcc gccccgatca cccaatcccc tttctcctcc cagaaaaaag gccttcgcca       360
     agaagtacgc atttctagcg acgaatccag ctcgtccatg gagcctggtg agatcaggcg       420
     taaggaccct aaaaatcggt ccctgactga ccaacccagc accagtgcgg cggcccgagc       480
     taggggtgac gttcccgaaa ggctgaagaa cagttctttt gctcttctgt ctggcgacga       540
     cagcgactcg gagagcgaca gtgagagcga gatgaaggag gagaagaccc tagccgatgc       600
     ccccagaaaa ctaccgaaaa cgaagcagcc aaagacgatc aagcctccgc cgatcttcat       660
     acccgacgtg actaacatca agtcgcttat tgagtcagtc accaagatcg ttggcaatga       720
     tatggacttt tcgtacaagg ccacgaggga caaccagatc agggttatga tgcctgacaa       780
     agccagctac tcagcagtaa agacacaatt agactccgcc ggcataatgt acgtcacgta       840
     ccaaccgatg aacccgatga acgagcatac aggcttgtcg tcaaaagctt gcaccactcc       900
     acgcccattg actacataaa gaaggaactg aaatgcttgg gaaatattgt cagagacgga       960
     cgtaatgcca ttggacaccg aagtaagagc ccactgccct tgttcttcat taatattgag      1020
     ccagcatcta acaacaagga agcttttaac atcaagaggc tctgcagatc ggttgtgacg      1080
     gtggaaccgc cccataaatt tgacgacata ccccaatgct atagatgcca aggctacgga      1140
     cacagccagc gatactgcag actgcaagct aggtgtgtaa aatgcggaga ggagcacgct      1200
     acatctgaat gccaaaagaa gagagaagag gcggccagat gcgttcactg cagtggagcc      1260
     cacccgtcat cgtacagagg acgccctgca tacaaaaagg ccaaggcaaa tatgctgaca      1320
     aacggctcac gccagacgta ctgacaggaa gcaacagcca ccagtccccg agatgccaag      1380
     gcggaccaag tgacggcctt catggaaagg akggagagtc ttttcgaaaa ggtgatggac      1440
     aagatgttca agcagatgac cctgatgctc agctccattc tctcccaagt ctgcagcaaa      1500
     taggtttgca cgtagccttt tggaatgcta acggcctagt aaaccacagg ctwgaagtgg      1560
     aacatttcgt kttcaccaac tccatagaca tcctcctcat atcwgaaacc catttctcca      1620
     gcagatcata twtccaccta cgtgggtacg acatcatcca tgcmgatcac cccagcggaa      1680
     gagcccacgg cggagcggcc atcataataa aggcagggmt caaatacagc gagctagcta      1740
     ctctgcagga ggactggatc cagtgcgcca aggtgaaccg tctccacccc actcgggaat      1800
     ctcacgattg cctctgtcta cctccccccc cccaaaaaaa caaggtgack gagagtcaat      1860
     ttgaccaatt gttgagcgac atgggtacaa aatttgtctt agcmggagac ctcaatgcca      1920
     aacaccagtg gtggggaagc cgattaaata accccaaggg aaatgcacta cagagatgca      1980
     ttcaacgtag agggattgac tgccactcta caggagaacc cacctactgg cccacggamc      2040
     cttttaaaca ccctgatatc ctcgacatag cgctctctaa agggatacac cactccaaag      2100
     tcgcctgcca ccctaatgca gacctgacat mggatcatag tgccgtcgag ctgttcatca      2160
     atcttccggt acggaaaaaa gacagttgtt caaagatgtt cagaaagggc actaatttcg      2220
     aagcgtacac agcctggatg atgaacgaaa ttgacccgga tactgatctg acctccgtcg      2280
     aataaattga tgcgctgttg aaaaattaac acaagagatg cacaacgccg ccgcttatgc      2340
     gactmcaaga gtcttacaca cttctggacc aactcacagg aacttgcatc tgtggtcgcc      2400
     tgaaattgct gcactcgtta cagaaaaacg aagactgaga agaacttggt ttattttcag      2460
     aaaccagtgg gataaacgag ccttcaatgg agcagcaaaa cggctctgag cgaacttgaa      2520
     ccaggggatc cacaacacaa cttgtgtcgt gttacgaaat gcatcaaacg gccagccaag      2580
     cgaggcgctg cagttaagaa cgacgacaga cctagggaaa ccgaaacagg gttccaagca      2640
     cactacgcag aaatcgatcc ggtcacactc gaggagattg atgccgaaat gaaggtactt      2700
     aaaaacaaca agtcacctgg aagcgacggc atcgaggcaa tcgccattaa acgtcttcca      2760
     ccttcttgca ttcagttggt catgaacatt attaatggat gtttccaaaa aggccacttt      2820
     ccgtcttcgt ggaaaaaagc agaagttata atgattccca agcccggaaa gcctgaagcc      2880
     aatctcgcct cttaccgtcc gattagtctt ctggcaatac tctccaaaat attcgaaaga      2940
     atatttttgc gcagagtatt gccgttgctg gacgagactg gtttgattca aaatcaccag      3000
     tttggcttca gacgctccca ctcaacacca gagcaatgcc ataggcaagt cagcacaatt      3060
     ctgaacgcgt ttgaggagaa aaaatacggc tgtgccgtgc tgctagagat caagcaggcc      3120
     cttgacagag ttcggcac                                                    3138
//
ID   Jockey-11_DTa repbase;    DNA;    INV; 5251 BP.
XX
AC   .
XX
DT   26-AUG-2021 (Rel. 26.11, Created)
DT   26-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5251
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (26-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Both termini are indeterminate.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(571..1068,1072..1854,1830..4988,4984..5250)
FT                 /product="Jockey-11_DTa_1p"
FT                 /translation="MMHLANDNSNYENEYPSLSDGKRDRKAVSVSSPRHVN
FT                 ISNNISNNSSNNIGKKSSKPGGPQGIQKITTPKAAIPPIIIVYNAEPKTLT
FT                 GMLQNFIKDNKFILNIINKNIIHVKVFCLEHYQQTKELLSKNKAKFFSYTP
FT                 KELKPHSIVLKKLPLDVFQVDDILTALESLPTVKCISVKPFKNKFWLVQVA
FT                 SIEEKKQVFQLKALLYCKIAVEGLKKNKNYLMQCRNCQRYTYMAINCNMGY
FT                 RCVKCTGDHGPGNCKIKKSENPSDKTEAKCVNCNGPHTANAPICPTRIAAK
FT                 EKQTQNRKSPTININRPITQAESLSLIRGKTTFSSLFSKKGKQEGTTKKVQ
FT                 PQQRVVTSSHELSKFMEKRLNPTQSFESFKRDTVEAFGKDTMSCFQIMQSA
FT                 TKKYSGIASLSHDEQKRQKQEIILDFLFQLSINLLVSIINKLMSQLKCIFQ
FT                 NVNSLVSLQKRNDLNLFLNKHRPDTMLIAEHRLGQRHSTNLAYYHFVRQLT
FT                 RATDTRIERRQVHRPENRGSSVAICIRNGTKYRRIEMGPLRFLEAVAIEMR
FT                 KGGTCHSIVIVSLYLRPNEPLHVQDLDKITDSISIQSPNSHVIIGCDLNAK
FT                 HPSWHVPTHSQSHFNTNGRILFNWLLAQPGLILHPTEEHSRPNQNHRDTSI
FT                 DFFICSTELPVSLGTGCKVLKDFSSDHFGVELKIRLGPFRLAQLDPKCIHN
FT                 FGKIDNLLWNTLVLRNVQPIPNHDTLDIADIDVHVEKLNQALEKALSSPSA
FT                 VPKILIDPTKAKKTVRLSQRCLNLIESRRALRRLLFRRRLTLVSHEKTQFI
FT                 TLIRELSTQINNLLEISHLKYIENRIKHIQPQNISIKSLANTGLAIEHLNH
FT                 DIHLTAEEKTTIDIPTPDVIHSLFTKINTLAWSSEQVHKQNDSISSESIAL
FT                 RQHARHIDTSVLNAFDGNPVTTSKIVNFDQNLSADGKWRGAEELGFTNASQ
FT                 LLDWVSNGNGKKTLGPDSSSNFLLKKCNMLVLGHLAKLFNQCYNVGYFPTS
FT                 WKCGRVIPIPKNKAKPESLQAYTILSAISQLFEKMLFAQIKKHLDANQILK
FT                 PYQFGFRENTSVSHSLAVANNFIFKNLSQKRATIACALDFEKAFDTVWTNG
FT                 LIYKMSQIFNFPSNTTRIVNNYLTQRSFFVCSPDGAERSLIRRINAGVPQG
FT                 SILAPILYNIYLADMPDFQRSPNSTSTACIQPLIYADDILILSLGARIASA
FT                 EIDLNLYLDQLCVYFKKWRLKLNAAKCEGCFIKGQRVSDIYPNARSFQPNI
FT                 FINSTTRVKMSADLKYLGVTYDAKLNFKNHIMNTLKKAKLQFNKIHQIFGP
FT                 ISDNGAGPNHELAKIKALIYKKLIQPILVYGHIGWFNIESRQMENLRLYER
FT                 KILRRTIGSAARNLITRHYMNNTELYKLTKTRRVDTLIFDIIEKFLENNKN
FT                 TQNALIKESIEQTRIPPNYSTNHLTIKNIKHLKEIGIIHDMNQNLIFYHRQ
FT                 RQSLSPEDLIFNINQINKLVFLTNYMQHTLPHYSLHPYITANQNLKLKLLT
FT                 SNDTHALISLKHKAKYKESHNLSKLEFVNQDCTIFKVSPLYYLYLPKTINL
FT                 KL"
XX
SQ   Sequence 5251 BP; 1920 A; 1206 C; 868 G; 1257 T; 0 other;
     tctcaacctc aaccagtgat caaaccaaaa gcttacctcc agatagtgac tgagaaaacc        60
     aatcaattca gacagtgact gcaataatca aagtggatca ttctgtgatc aaaaatgaaa       120
     accagcaatc tgcatatgca gttgctataa atcgaaaagc caaattaaag tctacaacaa       180
     agactcaaaa agtgcgaaat gagccgtata cggtaaacgt caaaaacttc caagaattcg       240
     atagtgcctt aatcgaaaga tcaaccgtta tgtccaacat cttggaccct ccagagctcg       300
     cagcccctgc aaacgtatca agttatagcc attaccaaaa aatggacttc gaagaagcct       360
     ccagaaaacg agaacactgt gatgaatcgt cggacgatga tggtcagagc agcagcgatc       420
     cttccgacct agaagaaaaa gaggagcaaa gtgatgagca tgtcaacctt acccaatcgc       480
     aactcagtgg gttaatggaa gaacttgaac tccttcgtca agaaaacaaa cgtcttaaag       540
     agctatacct acatcaaccg acaacaaaaa atgatgcacc tggccaacga caacagcaac       600
     tacgaaaacg agtacccgtc tctgtcagac ggcaagaggg atcgaaaggc ggtcagcgtc       660
     agcagccctc gtcatgtcaa catcagcaac aacatcagca acaacagcag caacaacatc       720
     ggcaaaaaat cgtcaaaacc aggaggaccc cagggtatcc agaagataac tacaccaaaa       780
     gcggcgattc ctccaataat tatagtttac aatgcagaac caaaaacatt aacaggtatg       840
     ttgcaaaatt ttattaagga caacaagttt atcctaaata taataaacaa aaacataatc       900
     catgtcaagg tattctgcct agaacactac caacaaacaa aagaattact gtcaaaaaat       960
     aaagctaaat tcttttcata tacccccaaa gaactaaaac cgcactcaat agtccttaaa      1020
     aaactccctc ttgatgtctt ccaagtagat gacatactaa ccgcccttta agaaagcttg      1080
     cccactgtaa aatgtatatc agtaaagcct tttaaaaaca aattctggct agtgcaggta      1140
     gctagcattg aagaaaagaa acaagtcttc caactaaaag ccttgcttta ttgtaaaatt      1200
     gcagtagaag gtctgaaaaa aaataaaaat tatttgatgc aatgtcgtaa ctgtcagcga      1260
     tacacgtata tggctatcaa ctgtaacatg ggataccgtt gtgtgaaatg taccggagac      1320
     catggtcctg gtaattgcaa gattaaaaag tcagagaacc cgtccgataa gactgaagcc      1380
     aaatgtgtca actgcaatgg tcctcacacg gcaaatgcac ccatttgtcc aacacgaatt      1440
     gcagctaaag aaaaacaaac tcaaaacagg aaatcaccca caataaatat caatcgtccg      1500
     attactcaag ctgaaagcct ctcacttatt agagggaaaa ctaccttctc ttctcttttc      1560
     tcaaaaaaag gcaaacagga aggcacaaca aaaaaagtgc aacctcagca aagagtagtc      1620
     acttctagcc acgaactcag caagttcatg gagaaaaggc taaatccgac ccaatccttt      1680
     gaatctttca aaagagacac ggttgaagcc ttcgggaagg atacaatgtc atgctttcaa      1740
     atcatgcaaa gtgcgacaaa aaagtactca ggaatagcga gcctcagtca tgatgaacaa      1800
     aaacgacaga agcaggagat catccttgac ttcttgtttc aattatcaat aaattaatgt      1860
     cgcaactgaa atgtattttc caaaatgtca attctctcgt ttctcttcaa aaaagaaacg      1920
     atctaaatct gttcctaaac aaacacaggc cggacacaat gctaatagca gagcatcgtc      1980
     tgggccagcg acactctact aacctagctt attatcactt tgtccgccaa ttaacaagag      2040
     cgacggacac tagaatagaa cgaagacagg tacaccgacc cgaaaaccgg ggttcctcgg      2100
     ttgcaatttg cattagaaac ggaacaaaat acagacgcat tgaaatgggg ccattacggt      2160
     tcctagaagc agtagctatt gaaatgcgga aaggcggaac ctgtcatagc atagtaatag      2220
     tatctttata cctacgacct aatgagccac tgcacgtgca agacctagat aaaataacag      2280
     actccatctc aatccaatct cccaatagcc acgtcattat aggatgtgac ctgaatgcca      2340
     aacatccatc ctggcatgtc ccaacccaca gccaatccca tttcaacaca aatggacgaa      2400
     tattattcaa ctggctcttg gcgcaaccag gtcttatcct tcatcccaca gaagagcact      2460
     ctcgcccaaa tcaaaaccat agagacacat ctatagattt ctttatttgt tcgaccgaac      2520
     tgcctgtcag cttaggtact ggatgcaagg ttcttaagga cttctcatcg gatcatttcg      2580
     gtgtagaatt aaaaattcgc ctgggacctt ttcgcctagc gcaattggac cctaaatgca      2640
     tccacaattt cggcaaaata gataatcttc tttggaacac gctcgtactc cgaaacgtgc      2700
     agccaatacc caaccatgac actctagaca tagccgatat tgatgttcat gtagaaaaac      2760
     ttaatcaagc tctggagaag gctctaagct ctccatctgc ggttccaaaa atattgattg      2820
     acccgaccaa agcgaaaaaa actgttagac tcagccagcg atgcctcaat ctaattgaga      2880
     gccgtcgagc tctaaggcga ctcctcttca gacgtcgact gacgctagtc tcacatgaaa      2940
     aaacccaatt tataacacta atcagggaac tgtccacaca aatcaataat ctgcttgaaa      3000
     taagccacct caaatatata gaaaacagaa taaaacatat ccaaccacaa aatattagca      3060
     taaagtcgct agcaaacaca ggtttagcaa tagaacacct caatcatgat atccacctca      3120
     ctgctgagga aaaaaccaca attgatattc caactcccga tgtcatacat tctctgttta      3180
     caaaaataaa cacgctagca tggtcatccg aacaggtaca caagcaaaat gatagcatat      3240
     catcagagag tatagcacta cgacagcacg ccagacatat tgacacgtca gttttaaacg      3300
     catttgacgg aaatcctgtt accacatcca aaattgtgaa ctttgaccaa aaccttagtg      3360
     cagatggtaa atggagagga gctgaagaac taggctttac aaatgctagt caacttctag      3420
     attgggtttc taacggcaat gggaagaaga cgctaggacc agatagctct agcaatttcc      3480
     ttttaaaaaa atgcaatatg ctagtccttg gccaccttgc caaactattt aaccagtgct      3540
     acaatgttgg atactttccc accagctgga aatgtgggcg agtaatcccg ataccaaaaa      3600
     acaaggctaa acctgaaagt ctccaagcct atactatcct ttcggctata agccaactct      3660
     ttgaaaaaat gttatttgcc caaataaaaa agcatcttga tgcaaaccaa attcttaaac      3720
     cataccagtt cggttttaga gaaaatacat cagtaagcca ctcccttgca gttgccaata      3780
     actttatttt taaaaatctt tctcaaaaac gagccacaat agcgtgtgcc cttgattttg      3840
     aaaaagcttt tgacactgtg tggacaaacg gactaatcta caagatgtcc caaatcttta      3900
     acttcccttc aaatacaaca cggatcgtta acaactatct tacccaaaga tcgttcttcg      3960
     tctgtagccc tgatggcgca gaacgctcac taatacgaag aataaacgca ggggtacctc      4020
     aaggctccat cctagctccg atactctata acatttactt agccgacatg cctgattttc      4080
     aaagaagtcc aaactcaacg tcgaccgctt gcattcagcc cttgatatat gcagatgaca      4140
     tacttatctt gtccttagga gctagaattg ctagcgcaga aattgattta aatttgtatt      4200
     tagaccagct atgcgtctac tttaaaaaat ggcgccttaa actaaacgcg gccaaatgtg      4260
     agggatgctt catcaaaggt caaagagtaa gtgatattta tccaaacgca cggtcttttc      4320
     aacctaatat atttataaac agcaccacaa gagttaagat gagcgccgat ctaaaatatc      4380
     tcggtgtaac atatgatgca aaactaaact tcaaaaatca cattatgaat acccttaaga      4440
     aggctaaact acaattcaac aaaatacacc agatatttgg accaataagt gacaatgggg      4500
     ctggtcccaa ccacgaatta gcaaaaatca aggcgcttat ttataaaaaa cttattcagc      4560
     caatcctagt atacggccac attggctggt ttaacataga atcaaggcag atggaaaact      4620
     tgcgtcttta tgaaagaaaa atcctacgca gaactattgg ttctgctgcc agaaacttaa      4680
     tcactaggca ctatatgaac aatacagagc tttacaaact aacaaaaaca agacgggtag      4740
     acactcttat atttgatata atagaaaaat tcttagaaaa taataaaaac acccaaaatg      4800
     ctctaataaa agaaagcatt gaacaaacaa gaatacctcc caactactca actaaccatt      4860
     taacaattaa aaacataaaa cacctaaaag aaataggcat aatacatgac atgaaccaaa      4920
     atctgatttt ttaccacagg cagcgtcaat ccctaagtcc tgaggattta atctttaata      4980
     taaatcaata aacttgtttt ccttactaat tatatgcagc atacattacc ccactattcc      5040
     cttcatccat acattacagc aaatcaaaac ttaaaattaa aattgttaac ctcaaatgat      5100
     actcacgcct tgataagctt aaagcataag gcaaaataca aagaatctca taatctaagt      5160
     aagcttgaat ttgtcaacca agactgtact atttttaagg tatcaccact gtactacctc      5220
     tatttaccta agacaataaa cttgaaactt g                                     5251
//
ID   Jockey-12_AAe repbase;    DNA;    INV; 4387 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4387
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1378-1378 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..1495
FT                 /product="Jockey-12_AAe_1p"
FT                 /translation="MDDCDHDQANKRRRFSNNNDSLPEYDSISSQQLQPQP
FT                 MVETENRFDLLADMDPDEVRSTNVNINSQVASTINTKKCRLPPISIINIGT
FT                 KQTRELLNLANIPQTEYHMKAVKSGTQLTVSNEDYFNAAIKALSDGNKEFF
FT                 THTPTSKQPVRIILSGLPLYDLDELKEELHLHGVRPLEMKVFFSKVFGSEE
FT                 SVLYLLCFEKGSVKLTELQKITGLFSTTVKWRFFSKRATDAVQCYRCQKFG
FT                 HGMRHCNVSPLCVKCGEKHTTTSCRLPTKAALKDLDTAERQTLRNGIRCAN
FT                 CSGNHTANFRGCPARKNYIRELETKRMRSKKNVTGVHSQSQPENRGSASIH
FT                 ASEPSHNCQPNNVGGLTFSQVLQGRAQRPNTQQHVAEESADLFSVTEFMCL
FT                 AKDLFQRLKGCRSKTEQFLALSELILTYVYNV"
FT   CDS           1491..4160
FT                 /product="Jockey-12_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSNTATLRLVNWNGRSIHSKQLEFFEFAERHNIDVAV
FT                 VTETWLRPSISFLHPNFHCIRLDRPSNDEVDRGGGVLIATRKELQYSQLNV
FT                 STKVIEATGISISTSSGPVHIIAVYFPGSRRCADWSLFRRDIRTLSNRTEP
FT                 FFLVGDLNARHRRWNCSKGNRAGNLLWQEAARLGLYVSYPDSPTFIPFGRG
FT                 KPSTLDLVLSNNQLDMTKPVTQNELSSDHLPVTFEIKPSSEPEQLVHTVRC
FT                 YARANWITFQRIVNSKLNITDPLITDIRDEVGVDAAIDYFKNSVLEAERIA
FT                 VPTIVPRPYEVACIPNETKLLIQLRNRRRRQWMRTRDPLLKEIVSSLNNNI
FT                 KEQCAKARYNKFAETLQTIDRRDHSVWRISKALRNKCKYSPPLRSGNTLFA
FT                 TPTEKAKLLAESFAQSHNNTVDGDSETVETVRRSVDQINQLLPAADYSWLV
FT                 KPKEVSKVIRNLKTKKAPGHDGIRNCLLKHLPRKGSVFLAKIFSACLKLCY
FT                 FPPSWKQAIVVAIPKPNKDSTLPSNYRPISLLPTVSKLFERIILARIEKHL
FT                 ETTSIIPHDQFGFRKGHSTSHQIVRLVNEVRQNFQQGKSSGLVLLDVEKAY
FT                 DSVWHDAILHKMFLGNFPVYLLKVVREFLKNRTFQVMVNGCTSDRMGVPFG
FT                 VPQGSVLSPTLYNIFSADLAKIDGVNYYCFADDTGFLTSDRDAQVIVENLQ
FT                 RAQETIQQYHKKWKVKVNALKSQAIFFTRRRSPRHMPQNQVICGGIVIPWS
FT                 DTVGYLGVTLDKKLNFGTHVTSCLRKCDMLIKTLYPLINRRSRLDPNIKLL
FT                 LYKTVFRPTVTYGFPAWSNCARSHRKKIQVKQNRLLKMMLNLHPSHPTDEV
FT                 HQLAKIELVDDWFLRLMPKFRLSCFASANPLIQELAI"
XX
SQ   Sequence 4387 BP; 1285 A; 1046 C; 908 G; 1147 T; 1 other;
     tttcagtttc gatctgtcaa ccggagagtg tggacgtaag agctacaatt aatttcggtt        60
     caatcggtta tttttgcgtg attaaatctc gaaagttatc aaagtggcta gcggcagtcg       120
     tctgcggccc aaagatgttc ccagcagtgg atcaaacata attattcgcc gtaattacgt       180
     taaatcatca aacccttcgt cgtttctaac ctcatcgatg gatgactgtg atcatgacca       240
     agcaaataaa aggcgacgat tctcaaacaa caacgactct ctgcctgaat atgattcgat       300
     ctccagtcag caattgcagc ctcagcctat ggtagaaact gagaacaggt tcgatctcct       360
     ggccgacatg gatccggatg aagtacgttc gaccaatgtg aatataaatt cccaagttgc       420
     ctcaaccatc aacacgaaaa agtgccgcct gccccctatt tccattatca atattggcac       480
     aaagcaaacc cgcgagctgt tgaatttggc caatattccc cagaccgaat atcacatgaa       540
     ggctgtgaaa tcggggactc agcttaccgt ctctaacgaa gactatttca acgctgcaat       600
     caaagcgctt agtgatggga acaaggaatt tttcacacac accccaacaa gtaaacaacc       660
     agtacgtatc attctttctg ggctgccgtt gtacgatctg gatgaattga aggaggaatt       720
     gcacttgcat ggtgttcgcc cactagaaat gaaagtgttt ttcagcaaag tgttcggctc       780
     tgaggagagt gtgctgtatc ttctgtgctt cgaaaaaggt tcggtaaaac tcactgagct       840
     ccagaaaatc actggcttgt ttagcaccac tgtgaaatgg agatttttct caaagcgagc       900
     aactgatgcg gtacaatgct atcgctgcca aaaatttggc catggcatgc gtcattgtaa       960
     tgtttctcca ctgtgcgtaa aatgcggtga gaaacatacc acaaccagct gtagattacc      1020
     gacgaaggct gccctgaaag acctcgatac cgctgaaaga caaactctgc gtaacggaat      1080
     tcggtgcgca aactgtagtg gcaatcacac tgctaatttt cgtggctgtc cagctcgcaa      1140
     aaactacatt agggaacttg aaacgaaacg aatgcgctcc aagaaaaacg tcactggtgt      1200
     tcattcgcaa tcgcaaccag aaaatcgtgg atcggccagt atccacgcca gcgaaccgag      1260
     tcacaactgt caaccaaata atgtcggcgg tttgactttt tcccaagttc ttcaaggccg      1320
     agctcaacgc ccaaatactc agcaacacgt tgctgaagaa agcgccgatc tgttcagtgt      1380
     caccgagttc atgtgtttgg cgaaggattt atttcagcga ctgaagggtt gccgaagcaa      1440
     aacggaacaa tttctagctc tttccgagct aattttgaca tacgtttaca atgtctaata      1500
     cagccacgtt acgwttggtt aattggaatg ggagatccat tcacagtaag cagttggagt      1560
     ttttcgaatt cgccgaacgg cataacatag acgtagcagt cgtcactgag acttggctgc      1620
     gtcccagtat atctttcctc catccgaatt tccattgcat ccgtctcgat cgcccttcga      1680
     acgatgaggt tgacagaggt ggaggggtcc taatagcaac ccgaaaggaa ttacagtaca      1740
     gccaattaaa tgtttctaca aaggttatcg aagccactgg aatctccatc tcaacatcaa      1800
     gcggtcctgt acacataatt gctgtttact tccccggcag ccgccggtgt gctgattggt      1860
     cactttttcg acgtgatatc cgtactcttt ccaatcgtac cgagcctttc tttctggttg      1920
     gagatttgaa cgctagacac cgccgctgga attgttcaaa aggcaatagg gcaggcaact      1980
     tgttatggca ggaagcggct cgtctcggtc tctatgtcag ctatccagac tctccgacat      2040
     tcattccttt tggacgtggt aagccatcta cactagactt agtactatcc aacaatcagc      2100
     tcgacatgac aaagccagta acccagaacg agttgtcgtc cgatcatctt cctgtaacat      2160
     tcgaaatcaa gccttctagt gagcccgagc aactcgtgca tactgtacga tgctatgcac      2220
     gagccaactg gattacgttc caaagaatag taaactccaa actcaatata accgatccac      2280
     tgataacgga cattcgtgac gaagtagggg tcgatgctgc catcgattat ttcaaaaaca      2340
     gcgtgttaga agcagaacgt attgcagttc cgacaatcgt cccaaggcct tacgaagtcg      2400
     cctgtatccc gaatgaaacc aaactcctaa ttcaactgcg aaacagacgt cgacgccagt      2460
     ggatgaggac cagagaccct ttgctgaagg aaatagtttc atctcttaac aacaatatta      2520
     aagagcaatg tgcaaaagct aggtacaaca aatttgctga gactttgcag acaatcgacc      2580
     gccgagacca ttccgtttgg cgtatttcca aagcgttaag gaacaaatgc aaatacagcc      2640
     caccactgcg aagtggaaac acgctttttg ctacaccaac agagaaggct aaattacttg      2700
     cagagagctt tgcccaatcg cacaataaca ccgtggatgg cgacagtgaa accgtcgaaa      2760
     ccgtcagaag atctgtcgat caaatcaacc aactattgcc agcagcagac tattcttggt      2820
     tagtgaaacc taaagaagtc agcaaagtaa tccgtaatct aaaaacaaaa aaagctccag      2880
     gccacgatgg gataaggaac tgtcttctga aacaccttcc aaggaaaggt tctgtgtttc      2940
     tagcaaaaat tttctcagct tgtctcaaac tatgctattt tccacccagt tggaaacaag      3000
     ctatagttgt agccattcct aaaccaaaca aagactccac attgccatca aactacaggc      3060
     caattagctt attaccaacg gtcagtaaac tctttgagcg cataatacta gcgcgcattg      3120
     aaaaacacct ggaaacaact agtatcattc cacatgatca gtttggtttc cgcaaaggcc      3180
     attccacaag tcaccagatt gtccgtttgg taaatgaagt gaggcaaaat ttccagcaag      3240
     gaaaatcttc ggggttggtt ctcctcgacg tcgaaaaagc gtacgactcg gtgtggcacg      3300
     acgctattct ccataagatg tttctgggta actttcctgt ctatttattg aaagtcgtac      3360
     gagaattcct gaaaaatcga acgttccaag tcatggtgaa cggctgtaca tcagatcgta      3420
     tgggagtgcc ttttggtgtt ccccaaggct cggtgttgag cccaacgctg tacaacattt      3480
     tttctgctga cctcgccaaa atcgatggag ttaattacta ttgcttcgct gatgataccg      3540
     gatttttaac ttccgatcga gacgcacaag ttatcgtgga aaatcttcaa cgagctcaag      3600
     agactatcca gcaataccac aaaaaatgga aggtgaaggt gaatgcgcta aaatcccaag      3660
     caatattctt cactcgccga agaagtccga gacatatgcc ccaaaatcaa gtgatctgcg      3720
     ggggcatagt tatcccgtgg tcagataccg tagggtatct gggagtaacc ttagacaaaa      3780
     agcttaattt tggaactcac gttacctctt gtcttcgcaa atgtgatatg ctcatcaaaa      3840
     cattgtaccc tcttataaac cgacgatctc gcttggaccc caacatcaag ctgctactgt      3900
     acaaaaccgt gtttcggccc acggttacgt acggttttcc tgcgtggtcc aactgtgccc      3960
     gaagtcaccg gaagaaaatt caggtgaaac aaaatcgcct actgaagatg atgctgaatc      4020
     tacacccgtc tcatcccacc gatgaagttc atcaactcgc caaaattgag ctggtagacg      4080
     attggttcct aagactgatg ccaaaatttc gccttagttg cttcgcctct gccaatcccc      4140
     taatacaaga attggccatc tagaactgtg atactatatt attaagcttt ttctctctct      4200
     gtctatttcc ttcatgtaat ttctaaggtt ttttttctgt atatttttcc ttattcgtca      4260
     atttttgttg cttggcctaa ttgttaatgt ttaaacatgt tcaatatcac tgctgtaagg      4320
     taatccacat ctcagtaaca gcccttacca tcaaattgta taagttaagg ataaatatga      4380
     aataaat                                                                4387
//
ID   Jockey-12_BTa repbase;    DNA;    INV; 5914 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5914
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 956-956 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..2299
FT                 /product="Jockey-12_BTa_1p"
FT                 /translation="MRKCFAHDIEQCSICKCTVHFKTDCVDATCTRIKNSE
FT                 LESEVNRLSQTLITKNTSGSFSLSVSRRNSLKNTSGSSNIKSSNPAMSTSK
FT                 RDEEMEFLKNQNTQLLNQVNQLTLQLNTMSTKISELVTELAAARKQANPNP
FT                 SIPVPGKRQRETSGDSPSKSKKIPSLAQKQLFKDQNKFAVLGNDDEMDDDD
FT                 EDEANDISLGSDDGIFVNPGSINPIINSAINRIKKTKAAVTKAKNSEKGKI
FT                 NVNKDTNSSPILNNLSTSTTNVSQSEEVKIKKLKKPPPIYTAINTKFNDLC
FT                 KALNKIDSTKWNSTVLPNDSFKINTIDDETHNKLVKELQTANIYFNTFENK
FT                 NTRPIRVIAKGLHHDIPTINIINSLKTSGFNPLSVLPNLKRIVEYPGKNKP
FT                 DASLNVSATSDKTSNSNSATDSNNVAPTANAPEQPTVNPDVSAESGSGDAV
FT                 ADATQGKTGEDNCSKIIPPTIKYQPLNTFTITFDHSDNIEKIFEIKTIANM
FT                 KVMIEPMPSNSPLTPIQCKKCQGYNHSSNFCNYPPRCVKCSGEHLSFQCEK
FT                 PKFITDPKCVNCGGNHAASYRGCLIAKTITEQRKELLKKIEEKKAIRTGQQ
FT                 VPPAASTLKKGVSFRDAFRDDRSFPNLNKYANQDQSENQNNNPAVEQSHQN
FT                 QPDRFDELFNTMNQILNSINNLAQRVVTLENKFQNNPGNTMNNKK"
FT   CDS           join(2299..5016,5020..5187,5191..5460)
FT                 /product="Jockey-12_BTa_2p"
FT                 /translation="MSNLPIKIACFNCNSITKRSDEVYRFIHDRDLDIMLL
FT                 TETHLASGMSYRGRPKGYDFFRSDHPSDSCRGGVGLIIKKSIKYYYDPNLD
FT                 ISTDNFQAVGVSVLTNLGEIFIASVYCPPNEITKKDDFIELFDKLPKKLIL
FT                 AGDFNSKSLAFGCRSHNPRGKELLQAINDKHANVITDGFPTYYPSDPNKQP
FT                 DILDFFITRNVSRNYLAVGSEIEMNSDHIPIKLAIHQSIILKRRNQITNAK
FT                 TDWDLYRSHLNQEINPCPIDSILKLEEEAKKLAELITSAASRVSPVIKYTN
FT                 TSLCLSPELRNLIAERRRARAKWQKSRFFKDRQHFEKINRLTTTKISEFRE
FT                 EQNFNYLKELSPSPTTNYSLWKATKYLKKSQGFSQPLQKPDGEWTKTHQEK
FT                 SDEFSRHLTEVFQPHKDIISDIDIELERAKITPPPPEEIGRVTPSEISDMI
FT                 KYKVKVKKAPGMDAVTGEMLKNLPNKAIKKISDIINAIFHFQFFPSTWKVG
FT                 EVILIHKKGKPAHLASSYRPISLLSILGKLFERAFLKRLMPIIDERKIIPA
FT                 HQFGFRKRHSTVEQVHKITNLIENCFEHKMICSVTLLDLAQAFDKVWLAGL
FT                 ALKIYKLLPTNYYLLLNSYLHGRTFRVRHEDTYSKFMPIHASVPQGSCLGP
FT                 VLFLIYMYDFPRTKGTRVSTFADDTGISSFGSNARTVGQALQRGLDRSSKF
FT                 CKRWRTLVNSTKSQHCTFSKIKCPEIQVKLNGEIIPAVKTANYLGIRLDTN
FT                 LTFGPHIQAKRRQILSKYKSMWWLFKPNSGLSIRNKILLYNMILKPVWTYG
FT                 CQLWGCAAKTNIQRIQSVQSNILRGLTGIHWDDYVRNDVIHRILDVPPVVE
FT                 TIKKLSLRYAQRLSMHPNNEAVDLIRRYSIGLRRLKRRKPFDCVADQLDSL
FT                 IDNLKDNFASRIFQGDVLTFLKRQITLFAVYISLFFVTCVSARHSRGGVTE
FT                 GQGLTYARGESPVHPGRRVAGSNTERLYCSRLPHRRPHSARTSEVIFSKIV
FT                 LMPNLSLSICYFEEKTLRIILTFNLCTFCIFTPKRQSLYLFVLTLI"
XX
SQ   Sequence 5914 BP; 2029 A; 1339 C; 1007 G; 1539 T; 0 other;
     ggagttcgtt atcaactgtg atcggaagcg gacctcagtg ctcggagctc tcccttatct        60
     gatctgtgac tgtgcgttca attttgtgcc acgacttatg ttttgaagcc taaaagccta       120
     aatcaatttt acaacgtatg taaaattcac taactttaaa gctgggcttc ggccccagca       180
     ctcaatactc tttatttttt aaatacacag actaattatg aggaagtgtt ttgctcatga       240
     tatcgaacaa tgctctatct gcaagtgtac agtgcatttt aaaaccgatt gtgtcgacgc       300
     tacctgcaca cgaattaaaa attcagaact cgaatcggag gtaaacagac tttcacaaac       360
     tttaattact aagaatacct ccggctcttt ctccttatcc gtttctagaa gaaacagcct       420
     taagaatact agtggttctt ctaatattaa atcctccaac ccagcaatgt cgacctccaa       480
     aagggatgag gaaatggagt tccttaaaaa tcaaaacacc caacttctca atcaagttaa       540
     tcagcttaca ctgcaactta ataccatgtc aacaaaaatt agcgaattag taacagaatt       600
     ggcagcagcc agaaaacaag ccaaccccaa cccctccata ccagttcccg gcaaaagaca       660
     aagggaaacc tctggagatt caccctctaa atctaagaaa attccatcac tggcacaaaa       720
     gcagcttttt aaggaccaga acaaattcgc cgtccttgga aatgacgacg aaatggatga       780
     cgacgacgaa gacgaagcta acgacatttc tcttggatct gacgacggaa tatttgttaa       840
     tccgggtagt attaacccta ttattaattc agccattaac agaattaaaa aaactaaggc       900
     agccgttacc aaagccaaaa atagtgaaaa gggtaaaatt aatgtcaata aagataccaa       960
     cagtagccct attcttaaca acctttcaac ttcaacaacc aatgtatccc aatctgaaga      1020
     agttaaaatt aagaaactta aaaagccccc tcctatttac acggcaataa acacaaaatt      1080
     taacgatcta tgcaaggcat taaacaaaat tgattccacc aaatggaatt caaccgtttt      1140
     acctaatgat tcttttaaaa tcaataccat cgatgatgaa actcataaca aactagttaa      1200
     ggagctccaa acagctaata tatacttcaa tacatttgaa aacaaaaaca ccagaccaat      1260
     tagggtaata gcgaaaggcc tccatcacga catccccact atcaatatca ttaacagcct      1320
     taaaactagc ggtttcaacc cgctatctgt tctacccaat cttaaacgta tagtcgaata      1380
     tccgggaaaa aacaaacctg atgcttcctt aaatgtttca gcaacttctg ataaaaccag      1440
     caattcgaat tcagctacgg attctaacaa tgtagccccc acagctaacg ctcctgaaca      1500
     accaactgtt aaccctgacg tatcggcgga atccggtagc ggcgatgcgg tggcggatgc      1560
     aacacaaggt aaaacagggg aagataattg ctcaaaaatt atccccccta caataaaata      1620
     ccaaccatta aacacgttca cgattacctt tgatcatagt gacaatattg aaaaaatttt      1680
     cgaaatcaaa acaatagcca acatgaaagt tatgattgaa ccgatgccat ctaactcccc      1740
     tttaacaccg atacaatgca aaaaatgcca aggctacaat cactcaagca acttttgcaa      1800
     ctaccctccc cgctgcgtaa aatgcagcgg cgagcaccta tcgttccaat gtgaaaaacc      1860
     taaatttatt acagatccta agtgcgtaaa ttgtggtggc aatcatgcag ccagctatag      1920
     gggctgtctg atcgccaaaa caattacgga acaaagaaaa gaactcctta aaaaaataga      1980
     agagaaaaaa gccattagaa caggtcaaca agttccccca gcagcatcca cccttaaaaa      2040
     aggagtatct tttagagatg cttttagaga cgataggagt ttccccaatt taaacaaata      2100
     cgctaatcaa gatcaatctg aaaaccaaaa taataaccca gcagttgaac aaagtcatca      2160
     aaatcaacca gatagatttg atgaactgtt caacaccatg aatcaaattt taaattctat      2220
     taataacttg gcccaaaggg tagtcacact ggagaataaa ttccaaaaca atccaggcaa      2280
     tacaatgaat aacaaaaaat gagcaattta cccatcaaga ttgcatgctt caactgcaat      2340
     agcattacta aaagatcaga tgaagtctat cgcttcatcc acgacagaga tctagatatc      2400
     atgttgttaa ctgaaaccca tcttgccagt ggcatgtcgt atcgtgggag acccaaaggc      2460
     tacgattttt ttagatcaga ccacccaagt gattcctgca ggggaggcgt tggccttata      2520
     attaagaaat caatcaagta ctattatgat cctaacttgg acatctcgac ggataacttt      2580
     caggcggtgg gtgtgagtgt cttgaccaat ctgggagaga tattcatagc ctccgtctat      2640
     tgtcccccga acgagattac aaaaaaggac gacttcatcg aactgtttga taaactcccc      2700
     aaaaaactta tcttggctgg ggacttcaat tctaaatccc tagccttcgg ttgcaggagt      2760
     cacaacccca ggggcaagga acttctccaa gcaataaatg acaaacatgc aaatgtcatt      2820
     accgatgggt ttcccactta ctatccaagt gacccaaata aacagccgga cattcttgac      2880
     tttttcatta cccgtaatgt ctctaggaat tatttagctg taggttctga gatcgaaatg      2940
     aactccgacc atattcctat caaattagca atacaccaat cgattatcct aaaaagacgt      3000
     aatcaaataa caaacgccaa aacagactgg gacctataca gatctcattt aaaccaagaa      3060
     atcaatcctt gccctattga cagtattctt aaactagaag aagaagccaa gaaactagcg      3120
     gagttgatca catctgcggc ctctagggtg tcaccagtaa ttaaatatac taatacttca      3180
     ctatgtctct cacctgaact caggaactta atagctgaaa gaagaagagc tagagccaaa      3240
     tggcagaaaa gcagattctt taaggacagg caacatttcg agaaaataaa cagattaaca      3300
     acaacaaaaa tctcagaatt cagagaagag caaaatttta attacttaaa agaattatca      3360
     ccctcaccca caactaacta ctcgttgtgg aaagccacca aatatctgaa aaaatctcaa      3420
     ggattctcac aacccttaca aaaacctgat ggagagtgga cgaaaactca tcaggagaaa      3480
     tccgacgagt tttcccgcca cttaacagaa gttttccaac cccataaaga cattatttcc      3540
     gatatagaca tagaactaga aagagctaaa atcacccctc ctcccccaga agaaattggc      3600
     agggtgacac cctcagagat ctcagatatg atcaaatata aagtaaaagt caagaaagcg      3660
     ccaggaatgg atgccgtcac tggcgagatg ctcaaaaatc tacccaataa agccatcaaa      3720
     aaaatttcag acattattaa tgctatattt catttccaat tctttccatc aacttggaaa      3780
     gtcggggagg tcatacttat ccataaaaag ggtaagcccg cacatttggc atcatcttac      3840
     agacctattt ctctcttgtc aatattgggc aagctctttg aaagagcgtt ccttaaaaga      3900
     ctcatgccca ttattgatga aagaaaaata atacctgcac accagttcgg cttcaggaaa      3960
     agacattcca ctgtggaaca agtccacaaa attaccaact taattgaaaa ttgtttcgaa      4020
     cacaaaatga tctgttcagt cactcttctc gatctagctc aagccttcga caaggtttgg      4080
     ctggccgggc tagcactcaa aatttacaaa ctactaccga caaattacta cctgctttta      4140
     aactcgtatc ttcatggaag aacatttcgt gtacgacatg aagatacata ttcaaaattc      4200
     atgcctattc acgcatcggt ccctcaagga tcatgtctag gcccggtttt atttttaatt      4260
     tacatgtatg attttccaag aaccaaaggc acacgagtct cgacttttgc cgacgacacg      4320
     ggtatttcat cctttggttc taatgctaga acggtcggtc aagccctaca aagaggactg      4380
     gacagatcat caaaattttg caaacgctgg aggactctgg taaacagcac caagtctcag      4440
     cactgcacat ttagcaaaat aaaatgtcct gaaatccaag ttaaattaaa cggagaaatt      4500
     atccccgctg taaaaaccgc caactatctg ggtataaggc tcgatacgaa cctaacgttc      4560
     ggcccccata tccaggccaa aaggaggcaa attctatcca aatataagtc catgtggtgg      4620
     ctattcaagc caaacagtgg attatctatt agaaataaaa ttctcttgta taatatgatt      4680
     ctaaagccgg tctggactta tggatgccaa ctgtgggggt gtgccgcaaa gacaaacatc      4740
     caaaggatcc agtccgttca gagtaacatc ctccgggggc tcacggggat ccattgggat      4800
     gactacgtca gaaatgacgt aattcaccgg atcctcgacg ttcccccggt ggttgaaact      4860
     ataaaaaaat tgtctttgcg gtacgcccaa agattgtcta tgcaccctaa taatgaagct      4920
     gtggatctaa tccgcagata cagcattgga cttagacgac tcaaacggcg caaaccgttt      4980
     gactgcgttg cggaccaatt agactcgctc atagactaaa accttaaaga taacttcgcc      5040
     tcccggattt tccagggaga tgtcttaact ttcctcaaaa gacaaattac tttattcgcg      5100
     gtgtatatct ctttattttt tgtaacatgt gtttctgcga ggcactcgcg gggcggcgtc      5160
     acggagggtc agggactcac atacgcatag cgtggcgagt ctcctgtcca cccggggcgc      5220
     cgggtcgcgg ggagcaacac ggaacgactt tattgcagcc gccttccgca tcgccgcccg      5280
     cattccgccc gaacatctga ggtaattttc tcaaaaattg tgttgatgcc aaatttatct      5340
     ttaagtattt gttattttga agaaaagaca ttaagaataa ttttaacttt taatttgtgt      5400
     accttctgta tattcacccc caaaagacag tcgttatacc tctttgttct tactctcatc      5460
     tagtcacttt catagaattt tttgacaaaa gacatttata attccccaaa taaaaccacc      5520
     atttggcact ttctaatgcg ctctaacatc gagctaatct taatgtcttt tattattctt      5580
     attgattgcg actgaaacga ctgtcactcg tgcttaatgc acccaattct aatctccttt      5640
     attatcttta ctgtgttata acggggtagg ggggcataat aattaagatc caaacatact      5700
     tgtaaatatc tatttaatta acttacatac atattataca atacttacaa caatccttat      5760
     ttacagtcac tgtacatatt gtaattagtt aagggtcggt ataataccgc ccacccatta      5820
     ctataaagta gttttagttc ctagttataa gaaatatagt taatactttg tagtcctata      5880
     catactgaat aaagaaaaaa aaaaaaaaaa aaaa                                  5914
//
ID   Jockey-12_DAn repbase;    DNA;    INV; 4790 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4790
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 393-393 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           731..1216
FT                 /product="Jockey-12_DAn_1p"
FT                 /translation="MKNPVPVQQLVPSWMHLRVQPELGDNXFAPLSSDDDD
FT                 DFDDVEATVIPSSDSELDVDCAGHKFRKNKLAEKTPKSFKPPPIFIPDVTN
FT                 IAALISAIENSVGKGKDFTYKAARDNQIRVMMPDKESYSALKSHLDSAGKE
FT                 VLYVPAQGGQGLSSRCKRSASHH"
FT   CDS           1900..4611
FT                 /product="Jockey-12_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQQVGLHIAFWNANGLVQNRLEVEHFIHTQCIDILLI
FT                 SETHFTHKSYLQLHGYDVIHADHPSGRGHGGAAIIIKDSINYSEIATLKEE
FT                 WVQCARIAVSTAMGKLTIASAYIPPKQRVSEDQFGLLLGDLGDKFILAGDL
FT                 NAKHPWWGSRVSNPKGSALFKCIQRRAYNCHSTGEPTYWPTDPQKLPDLLD
FT                 FAISYGIHPDSIVCSPNGDLFSDHSAVELHINTPVEKKVTQHRMIRPRTNI
FT                 ETYTEWLDNALESTQQDLSTGAGIDQAVLNLTQEMHNAAQIATPRAPCNNR
FT                 KLQRHLHLWSPEVAALLNEKRRLRRVWFQTRYPNDKTAFNRATKKLKRLLQ
FT                 RLRTCAFEEYLRQVEPGDPQHNLWQLTRHIKRPKQRVAQIRKADGGWCRSD
FT                 QERADAFAAHLEEAFKPFGLCSEEDRAETDNVLAQPHTDFSQLEPVSEEEV
FT                 MEEVSGLNTKKSPGDDGIEALALKYLPPSGIRRLTSIYNACLEIGHFPTSW
FT                 KRAEVILIPKPGKPESDLASYRPISLLSIISKILERLFLRRLQFLLDEAEL
FT                 IPDHQFGFRRSHSTPEQCHRIVAKILDSLEEKKYCCAVFLDVKQAFDRVWH
FT                 PGLRAKLKRNLPQNHYEFLNSYLTDRKFRVRSGEARSGYRPIEAGVPQGSV
FT                 LGPILYTLYTADMPVAAEESLLAATYADDTAFLASATSPEEASACLQRQLG
FT                 ILDPWLRRWNIAVNHDKSVQTTFTLRRGDCPGVSLGGTLIPASPTPKYLGM
FT                 TLDRRLTWRTHLLRKRKQLQDKLRQLYWLIGRRSRLKLRVKLLIYKTIVKP
FT                 VWTYGIQLWGTASPSNRKIIQLAQNRALRTLSGAHPYHDNMTIHAQLGVPW
FT                 VSEEVRRFATRYVDRLDRHPNPQAINLLDNSTTLRRLKRTHPLDLRLEETD
FT                 "
XX
SQ   Sequence 4790 BP; 1403 A; 1177 C; 1130 G; 1079 T; 1 other;
     ggtaggctga caccacctac catatatacc tttttagttt tgatttatat gtcaagctat        60
     ttggacgtgt tgaaaaagtg ctcccaaaaa tatacaaaaa agtgatgaaa attttttcta       120
     aaaaaaaaaa agtgttgaaa aattttctct aaaaaagtgc tgaaaatttt ttctaaaaaa       180
     gtgttgaaaa ttttttctaa aataaaaact tgtaaaaatt ttttttaaca agtaggctat       240
     gataaaaaac aagtaggcta tggaatttaa ttcttttctt acctgaataa tattgtgtca       300
     atattcagtt gtaaaccgga gctcttcgga gtaacattaa aaatttttat ttggcaaaaa       360
     aaaaaaaaaa aaagttttaa aatttggaat taaaaatttt gtttgatcag tgatacgtta       420
     caagtgaaag tgaaagtgtt tattacgtta ttgtataagt ttttttttag ccggttgaaa       480
     tatttcggtt tcgacaaatt cggtaatttg gcgcgaattt cgagactctt ttaaaactcg       540
     aattcgcgcc caagcccaag gatggactgg caaggatcgc cacgctcatc cactcaactt       600
     tcgagaaaaa gggccagcgg aagtattgcc agtgactcca gcgactccgc cgagcctggg       660
     gaaattacaa gaaagtcagc caggaagtca gccaagaagt cagccaagaa gtcagccagg       720
     aagacagagg atgaaaaacc cagtaccagt gcagcagctc gtgccgagtt ggatgcactt       780
     aagagtgcag cctgagctag gagacaattw tttcgctccc ctctcttctg atgatgatga       840
     tgatttcgac gatgtggaag cgaccgtgat cccctctagc gatagtgagt tggacgtcga       900
     ctgtgccggg cacaaattta ggaagaacaa gcttgccgaa aagacgccca agtccttcaa       960
     gcctccgcct atctttatcc ctgacgtcac caacatagca gcactaatct ctgcaattga      1020
     gaacagtgtt ggaaagggga aggactttac ttacaaagcc gccagagata accagattag      1080
     ggttatgatg ccggacaagg agtcgtactc tgccctcaag tcccacctcg atagtgccgg      1140
     gaaagaggta ctttacgttc cagcccaagg aggacagggc ctatcgagtc gttgtaaaag      1200
     gtctgcatca caccactgac attgacgata tcaaggagga cttccggcgg caaggacatg      1260
     tggtccgaga tgtgcgcaat gctgtagggc acatatctaa gacaccgcta tcgatcttct      1320
     ttcgttaacc ctggagccat ccagcaacaa caaggaggta ttcagtgtta agagagtgtg      1380
     tcactctgtg gtcacggtcg aacctcctcg caaattccac gacgtgccac agtgctaccg      1440
     atgccaaggt tttggccaca gccagcggta ctgcaagctg cagcatcgct gtgtcaaatg      1500
     tggtgaccac cacagcacga gcgagtgcaa gaagaaacga gaagaagcgg caaaatgcgt      1560
     gcactgtcac ggggcccatc cggcatcgta caaaggatgc ccggcttata agaaagccaa      1620
     ggtcagcatg gctcctaagg aaccacgccc agctcaacca cgccgcttag catacccacc      1680
     ccctcagcaa tacccaacag tggacacctc agctagaagc tatgctgata tagccagagg      1740
     aggagcccgg ccacaacatc aacaaacgac agcacccgag attccgcagg ccgaccagat      1800
     ggcagctttc atgacaaggg tagaaaacct gctagaaaga gttatggaca agatgttcga      1860
     gagaatgact tcaatgatca gcgccatcct ctcaaaagta tgcagcaagt aggcctgcac      1920
     atagccttct ggaacgctaa cggacttgtc caaaacaggc ttgaggtgga acattttatc      1980
     cacactcaat gcatcgatat actgctaata tcagaaactc atttcaccca taagtcatac      2040
     ctgcaattgc acggctatga tgtcatacac gcagaccatc ctagcggaag aggacacgga      2100
     ggagcggcta tcatcatcaa ggacagcatc aattacagcg agattgcaac cctcaaggaa      2160
     gaatgggtcc agtgcgccag aatcgcggtc tccactgcaa tgggaaagct caccatcgca      2220
     tcggcctata ttcccccaaa acagagagtc tccgaagacc agtttggcct ccttctgggc      2280
     gacttgggtg acaaatttat tctcgccggc gacctcaacg ccaaacaccc atggtggggc      2340
     tcaagggtga gtaaccccaa aggatctgcg ctatttaaat gcatccaacg tcgtgcctac      2400
     aactgccact caactggaga gcctacctat tggcctacag accctcaaaa gctgccggac      2460
     cttctcgact tcgctatctc ctatggtatc catccggact ccatagtctg ctcacctaac      2520
     ggagatctct tctcggacca tagcgcggtg gagctccata taaatacccc cgttgagaag      2580
     aaagtcaccc aacataggat gattagacct cgcaccaaca tcgagactta caccgagtgg      2640
     ctagacaacg ccctagagag cactcagcaa gaccttagca cgggtgctgg tatcgatcag      2700
     gctgttttaa accttacgca ggaaatgcac aacgctgccc aaattgcaac cccaagggct      2760
     ccatgcaaca acaggaagtt gcaaaggcac ttgcatctgt ggtctcctga agtagctgca      2820
     ctcctcaatg agaagcgacg actaagaagg gtttggttcc aaaccaggta ccctaacgat      2880
     aaaacagcct ttaatcgcgc aaccaaaaag ctaaagaggc tgctgcagag gttgcggact      2940
     tgcgctttcg aagagtatct gcggcaggtc gagcctgggg acccccagca caatctgtgg      3000
     caactgacgc gtcacataaa gcgtcccaag caaagggtgg cccagattag gaaagcagac      3060
     ggcgggtggt gtcgctcgga tcaggagaga gctgatgcat ttgctgctca tcttgaagaa      3120
     gccttcaaac ctttcggctt gtgctcggag gaggatagag cggaaacgga taatgtgctg      3180
     gcccaaccac acacggactt cagccagttg gaacctgtct cggaggagga ggtcatggag      3240
     gaagtgtcag gcctcaacac caagaaatct ccgggggatg acgggattga ggcactcgca      3300
     ctcaaatatc tcccaccttc aggcatacga agactcacga gcatttataa tgcgtgcctt      3360
     gagattgggc attttcccac tagctggaaa cgggcggaag tcatcctaat ccctaagcca      3420
     ggaaagccag aatctgacct tgcttcttac aggccaatta gtctgctctc gattatctcc      3480
     aaaatcctag agagattgtt cctgcgaagg ttgcagtttc ttttggacga ggcagaatta      3540
     atcccagatc accagtttgg tttcaggcgc tcccactcca cccctgaaca atgccacaga      3600
     attgtggcaa aaattctgga cagcctagaa gagaaaaagt attgctgtgc tgtctttctg      3660
     gatgtcaagc aggcgtttga tagggtctgg caccccgggc tgagagcgaa gctcaagagg      3720
     aacctgccac aaaatcacta cgagttcctc aactcttatt tgacggacag gaagttcagg      3780
     gtcagaagtg gggaagcaag atccggttac aggcccatcg aagctggagt cccgcagggc      3840
     agtgtacttg gccccatcct gtataccttg tacacagctg acatgcctgt tgctgcagag      3900
     gagagtcttc tggccgcaac atacgcggac gacactgctt ttttggcctc tgcaacctcg      3960
     ccagaggagg cttcagcctg tctccagcga cagcttggca ttctagaccc ttggctacga      4020
     agatggaaca ttgctgttaa tcacgacaag tcagtccaaa cgacgttcac cctgaggaga      4080
     ggcgactgtc ctggtgtcag tctcggtggc acactaattc cggctagccc tacacccaaa      4140
     tatctgggta tgaccctaga caggaggctc acttggagaa cccacttgct acgaaaacga      4200
     aagcaactcc aagacaagct gcgtcagctt tactggctaa ttggacggag gtccagactg      4260
     aagctgagag ttaaactcct aatatacaaa accatcgtga agccagtttg gacctacggc      4320
     attcagttat ggggaacggc gagtccaagc aatagaaaga tcatccagct tgcgcagaac      4380
     agggcactca ggacattgtc tggagcccac ccttaccatg ataatatgac catccacgcc      4440
     caactaggcg tcccatgggt cagcgaagag gtccggagat tcgccacaag atatgttgat      4500
     aggctggatc gacatcccaa cccccaggcc atcaacttgc ttgacaacag taccacattg      4560
     agaaggttga agcggactca ccctctggat ctcaggctgg aggagactga ctagtgaggt      4620
     attagtaata aattagagac agctttcgta aaatgtggca tttttccacc tagttaaata      4680
     ttgtattctt tctgtcaagg aaccattctt aaatttaatt attgtccata tctgcggaca      4740
     gattttaaat gtaacttctg attgatttac aaaaaaaaaa aaaaaaaaaa                 4790
//
ID   Jockey-12_DBp repbase;    DNA;    INV; 2310 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2310
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 719-719 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2310 BP; 623 A; 651 C; 545 G; 451 T; 40 other;
     actktccgca wgtcmttgtg caaacgggtc tagacgtcac aatttkgaac gcsaacggcc        60
     tggtwaaaag caggccagcm gtggagctct actgcaaaac tgaawaakcc gatattctcc       120
     tcatacccat tttacaaaca gatcctacct aaccctcaga ggatacgacc ttattgctgt       180
     caaccacmca aacggaagag gtcgcggkgg tgcsgccatc ctcatccgca gcagcatcaa       240
     gtacgagacc ctgccagcca ttagakagga ctgggtgcaa tgcgctcaaa ttcaagwcsc       300
     caccaccaag ctccctcggg cccaagctcc tcattggcgg ggactttaat gccaaaaacc       360
     ctwggtgsgg ctccagagtc aatmacccaw aasgcgtggc cctamttagg caamtctggg       420
     ctcwwaatct csgctgccat ggcgctccga cctactggcc agcagatcga aggtcccaga       480
     aggcttcgcc atcacaggag gactggactc ggccggaatc casgtacgag aagwcsccga       540
     ccttatttct gaccagcgct gcsgtktctm catacacgsc agccatccta aggtcggmcc       600
     ggaagaagmt tatttataag acgacggaca tcgggamatt ccastgaagg aagcgttcga       660
     cgggttcttt gaacagttgg aaccgggtga ccacactggc ggccgtcgca aaaccatgcg       720
     gcgccccatg aagaggtccc acccgcagcg agccgatggc agttggtgca ggtcagagat       780
     ggaacgagcc aacgcgttcg ccgaacacct ggaagcgtat tcaccccttt ctaccgctgc       840
     tcgccagaag aggcagcaga aacggaacga ctcttggcag agcccgcacg aggcgacgac       900
     agaataccac ctgtgacgga agaggagaca gccgcccaga tttcagtgtt gagcaacaac       960
     aaggccccgg gcgatgatgg catcaatgca accgcattaa aactgctgcc acctccaagc      1020
     atcaaaatac tgacgaaaat ttacaataga tgcttagaaa ttgggtactt tccgaccaac      1080
     tggaaacatg ctctggtaac catgatacct aagcccggaa aacccgaagc cgatcttgcc      1140
     tcttatcgtc cgattagtct cctatcgata ctctccaaaa tactcgaaag gagtgttttt      1200
     gagtagagca ttgccagtac tggacgaggc tggtctgatc cccaatcacc agtttggctt      1260
     caggcggtcc cacggaaccc cggaacaatg ccacagagtg gtgcagtata tcctggacgc      1320
     cttcgaaacc aagaagtact gcctggctgt aatgctggat gtcaaacaag ccttcgaccg      1380
     ggtctggcac tccggtctcc tgcttaaatt gaagactaac ctgcccagac cttactacct      1440
     ctttctggag tcgttcctga aggaccgcaa atttgcggtc agatgcggag aggccacttc      1500
     cggactcagg gaggtccgcg ccggagtccc ccaaggcagc gtgctgggcc ctttattata      1560
     caatgtctac acggccgatc tcccagtttt gcggagcccc aacataatgg cagcgaccta      1620
     tgcggacgat accgccttcc tgaccgctgc tgacaacgct acagaggcag ctgctgtcat      1680
     gcaggagcaa ctagatcttc tcggcgattg gcagagaagg tggaatattc aagtgaataa      1740
     cgataaatcc accgccacca cattttctct ccgtcgggga aattgcccac cggtccacct      1800
     caacagctcc cccatcccac aagtagaaaa cccaagatac ctgggcttca cgctagacag      1860
     gaggcttact tggaagcctc acctagtcaa aaagcgaaag cagtgtgaag taagattaaa      1920
     ggcgtactat tggctgatgg gtaggaggta gagccctccg tatcgctact ggggcccacg      1980
     ttaccacgac aaccagacaa tccacgaggt gcttggcttc cmatgggtga aggaggagat      2040
     ccagagaagc agcagcaagt acatacatcc agagactaca caaccacccc aacgagttgg      2100
     cgaccactct cctcgacaac agcgaacaga tgcggatgct gcgcagaact cacccgctgg      2160
     atctctccgg aataactctt acattcttat ttttccacct ctaacttaag ttacacataa      2220
     gccaagtttt ctgccacaat atttaatggt tgtccctgtt ggacagtttt aaataaaacc      2280
     acaccaacaa aaaaaawaaw aamaaaaaaa                                       2310
//
ID   Jockey-12_DEl repbase;    DNA;    INV; 4665 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4665
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4594-4594 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 4665 BP; 1305 A; 1343 C; 994 G; 1009 T; 14 other;
     atcacaaagt gaatcagcta taggtgattc cacagttttt tcacatgcac tgggccccgg        60
     caaatgctgg tggtccactg atctcaacga ggcgatcagc tgttcaagct ttaagctctc       120
     aacaggttta tatctgagct aagcaacagt gacatacctt ggcttagcat ttatcttgca       180
     ttttgttaat tactcaacwt tatttggtaa agtttttgct aattactaaa aatggacccc       240
     cctcttcaac aacaacccat cgatctgaaa tcgatgagga agactgctgg agcaactcct       300
     gccgaactac gggctatatt acgagataat ataatggacg gcttaaaagc cggcagtaca       360
     accagatggg ctcccacaag ctgcaccaca acctgtactg taacatcctc gatctcatct       420
     tcattgacgt tctcaacaag ctcgaatggc agtttgtgtt gcgctgcatc cagcacgggg       480
     caagatcctg ctcctactca cacaccatca ggcaactcca ccccagagtg gcagcaagtc       540
     acctcaaaac ctaacaaagg agcagcaaag aagagagcag gtaccgctct ctctcccaag       600
     gtcagccaaa agaagacaag ctctaccgcc aactccggaa accgcttcat aaccctaagc       660
     gatgaggaag aaatggacgt cgagccttcc acttcgcaag ccgcgttaaa ccgcgccgca       720
     aagaagtgtg acgcaacttt acagccagca aaatccaaca gctcaggaca agtccaaaca       780
     gccgcaccgc aagccgctcg atcacccaag gtcccaagga ttatggttcc cggtgtggtc       840
     aacttctctg ctttctgcag tcagctggat gctcttatag gagacgccta ctccatcaaa       900
     gcgctgaact caggtgaatg cgccgttcag tgcaactcct ccgatgccta caggctcgtg       960
     gccaaacact tccgcgaaaa aggacttgtt ttccaccacc accagctgcc gaagaccgac      1020
     cctttcgcat ggtaatgagg aacattcatc atgacgtccc atcggaggat atcattgagt      1080
     gcctgcagga agagggtcac tgcgttttgc gcatctatac ccctcgtaac aaggcaactc      1140
     agcttccact caacatgagg tttgtggacg ttaaaaaggc tgacaacaac aagcttctta      1200
     aaaacatcac tgctgtctgt agacacatag tgacatggga gaagccacgc aagcaagccg      1260
     gtcctgtaca atgccaaaga tgtcaggaat acgggcatac aaaagcatac tgcacacggc      1320
     attacatctg cagggaatgc ggagaaaacc accctacccc agagtgtaag cttggaaaag      1380
     acgaccctag gtgctgcatt cactgcggaa actctcacgc ggcaaacttc agaggatgtc      1440
     gtaaatatct gcaagtcgca tttaagcaaa gtcaccaatc gaagatcaca gcagcctcag      1500
     aatcgaacac gattcctcca acccatctct ctcacctacc aacccaacgt tggtagggaa      1560
     tcatttgcta gtgtagccaa aaggaaccta cccatcgcac aacgcagcaa ccctcgcaaa      1620
     gagatggaaa wtactccccc tcmaactctt tccaccgcwa atgccgctct ggatgccaag      1680
     ctggaacagc tttttatgag gctcgacagg atgatgtctc tggtagagac actaatgcaa      1740
     gcactcctgc agamgcgtcc ttcctcctct actctccaca atgggtgtgc ttaaaatagc      1800
     ctgctggaac cccaatgggc taagttcgaa agctaacgag gtcattgctt tcatagagct      1860
     acacgaaatt gacatcctct tgttgtcaga agcccgcctc tgctcgcggt ccaccttcag      1920
     ggtccccggc tttactttgc acaaagccga tcatccggac gaccagagac atgggggcgc      1980
     agcgatcctc gtcaagtcgt gcatatccca tcaactctct tccactcttt cggaagagca      2040
     cattcaagcc gtctccattg agatttcttc aagaagaggg aggtttaacg ttgcttcggt      2100
     gtactgccct cctgctgtca ggtggacaga agcagacttc atggcgctcc tctccagmct      2160
     cggagataag ttccttgctg caggtgattg gaatgccaaa cacagatggt ggggcaacaa      2220
     cagaatctgt gccagaggcc ggaccctcag ctctgttctg gccaatgtca atgtcgatat      2280
     tgttgcaact ggagaagcca cctactaccc ctatcgtgca aacgccaccc ccagtgccat      2340
     tgactttggc atctcaaaag gcttcagaca acagcaggtc tccgttagag tactcaccga      2400
     gctttcttct gaccacctcc cattgctttt cctgataaat gaagaagctc aattctttaa      2460
     aggagtcccc gaaatgctgc cggcccatgc aaacattgcc acttttaggt ccttcatcga      2520
     tgtcacaccg tgctcaacac accaataaca acctgcagcg atctagatgc atacgttgat      2580
     agcttcactt ccacaattac tgaagccgcc cggagagcta cgccacctca gcgccaatct      2640
     ggtctcccac ctactaggag ggcgccctta ctaacaccgg aggcaagggc actgctggat      2700
     caaaaaaggc acctaagaag gcaatttatt gtgtcaggcg atcccgatac taagcagcta      2760
     ctatcaagcg ttagcaacag actgcacagg ctgctagcaa aaactcgcca aaagaacatc      2820
     gataccctgc tggagggagc tggcccggac aattgcagcg atttttcgat atggaagctc      2880
     acgagaggaa ttaaaagaca gccgcttgtc caatccccaa tacagagcca cagtggccac      2940
     tggctgaaga aggactcaga caaagcaaac gcttttgctg aacatctgtc tgctaccttc      3000
     actcctctcc aacttccaga cgcttcgcac cgcgatgaag ttgcaaactt cctaagcgmt      3060
     cccatccagc cagcgcgccc cattaggcac accacgccgc aggaagtcac gctgcaacta      3120
     aaggcactca atctaaaaaa gtctcctgga ctcgatggaa tcgacaatcg agcggcaaag      3180
     gctcttccac tcaaaggagt gctagcgctg gtaaaaattt wcaacgccat gttatgcctg      3240
     ggacactttc caaggcagtg gaagaaggca aggatcatca tgatcccgaa gccaagcaag      3300
     ccaccgtcga aaatcgattc ctaccgccca atcagtctgc tatccacttt atcgaaagtg      3360
     ttcgagcgga ttctactcag tagacttttg gaactgccac aagtagaagg ccacataccc      3420
     caacaccagt tcggcttcag gaaatcccac ggctgcccag aacaagtcca tcgcctggtc      3480
     aaccacatca cccacggact cgagcacaag ctgcacacta taggcgtctt cctagacgtc      3540
     aaacaagcct ttgacaaggt gtggcacgag ggcctccttt ataaaatcaa ggaacttctt      3600
     cctgcaccct acttcgccat cctgaagtca tttattgccg atagaacctt cgaagtagcg      3660
     gtaagggaag cacgatccag tttggcatac atacatgcag gagtgcccca aggaagtgta      3720
     cttggtccgt tcctatacac catgtacaca agtgacatgc cagttccgtc gcccacctca      3780
     aacgctcgta tgcttctggc tacttacgct gacgacacgg ccctgcttgc gtcccacacg      3840
     tcccaactga cagcttcggc tgcagtgcaa gactggctgc gtgcgatgga gcgctggacc      3900
     aagcaatgga atatagccat aaactgcagc aagtcggcat gcgtcacctt tactctaagg      3960
     cttgtcatsg acatcttcca tacttttaat ggtgacacca tcaaaaacac cacctcwcac      4020
     tgctacttgg gtgtacacct ggatcaccgt ctcatttgga acacccacat cacggcaatc      4080
     cgagccaagt gcgtacgcaa gctccagaag ctcgattggc tcctgagttc caaaagcctc      4140
     cakctctcaa cgaaggtcct gctgctcaaa gcaatcctta cgccaacctg gacatatgcg      4200
     atccaaatat ggggcaccgc atccaagcac cagctaaaca agctgaggat agtgcaggca      4260
     cgtgctgctc gacgggcatc cgggcttccs tggtacgtaa caaaccaggc catcctaaac      4320
     gatctgcgac ttgttcctgt gggcgacctc ctcaaccaac acagccaacg gtactcggac      4380
     aggctaagga accatccaaa cccactggct agcagactga ccgacccaca atctctaaga      4440
     agattaaaga gattccaccc cagcgatctg tcttcccgtg ttgtacaata atwttgtaat      4500
     ccttgttaac aatttgtaaa tatgtgtaaa tatttgtaaa taattgtata tagtccaggc      4560
     ccatatccca tgtgtaccat atatacccca tcctctaaac gaccggttat gttcagatgg      4620
     ccctgaacga ttccggcgac aataaaaaaw aaaaaaaaaa aaaaa                      4665
//
ID   Jockey-12_DF repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-674
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 980-980 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 674 BP; 229 A; 145 C; 119 G; 179 T; 2 other;
     ccgcactaaa agttgtccag aagtccgact aaatggcacc acactgcctg aagttaatac        60
     agtcagatat ctcggcctaa ctctggatag aagactaacc tgggcagaac atatcaaaat       120
     caaaaggaag cagctgagcc ttaagcttcg tcaaatgaat tggctgctgg gctacagatc       180
     gcaactgaac cttaggaata aagtcatgct ttataaggtc attctgaagc ctatatggac       240
     gtatgggatc cagctttggg gcacagcctc aacttccaac attgatatac tgcaacgctt       300
     ccaaagtatt actttgcgta gattggtcaa agcaccttac tatgtaagga acgcggtcat       360
     acatagggac cttggtgttc ctagtgtaac tgaagaatgt aatagatttg ctttaaaata       420
     tcaacataga ctggaaaatc actgcaattc actggccata aaccttcttg acaacagtct       480
     acatcgccga cgtctgaaaa ggcaccaccc ccttgatctt ccatttagac caccgaagga       540
     gttgtagcta atacttactt gcaaatacct acatacccat aacaaaaatt gactgtcatt       600
     accwwtgtca tataatttac ttattatctt taatttagat agattgtaaa taaataaata       660
     tacaaaaaaa aaaa                                                         674
//
ID   Jockey-12_DTa repbase;    DNA;    INV; 5407 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   26-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5407
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5931-5931 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           100..1875
FT                 /product="Jockey-12_DTa_1p"
FT                 /translation="LKISSNIQIVTEILPNTVSEKQDTKVDPSTFNEQIAA
FT                 YSTSLGIKKPELINNTKSKTIKHLGKTRNAPYLTSSHLTRKINRASIEPVN
FT                 MSLATNNMDPTATPEPNTSNILKMEIDLSSIKRQREKNRTSENSEEEDYSE
FT                 DSYETEGEDEEELEALITKEQLDSIMEELAILRQENQRLKDERAESAAIKN
FT                 NKFALLNNDDNKNNQDFPRLGKPIANKKRSKMTAATATSPVTTTTAVPKQV
FT                 KNLPVIVVFNQNPKLLQICLKTIIKPEDFILNIINKNRTNIKLFSLEEFEK
FT                 TKTLLTERNTRYFTYTPKQLKPHTVILKKLPPSVYEESEIKKALAESIPEL
FT                 VFLSVKQFKEVLWKITIQKSDQIKLIFKLKALLNCKIIIEAYKPHVNEIKQ
FT                 CFKCQRFKHVASNCSMEYRCVKCIEKHEPGQCKIKKENEDNMSTNKVQCIN
FT                 CMGPHTANAKICPKRMEILEKLKCKRAETKNKSTKIIHKAINQSKTIQGRS
FT                 FSSLFNHNPPTASNSNIKTTNPALQQHMGNVTKSKNSQQINALTFDDVNND
FT                 SLNLFGKNIVQCIEIMQNTIKKYPNNNDESLKKQILLDFILQIAQ"
FT   CDS           1824..4979
FT                 /product="Jockey-12_DTa_2p"
FT                 /translation="RKPKKTNFIRLYLTNSPVTMPLKCIFLNVNGIRQLRK
FT                 RNELNHFLNTHRPDVMLIAEHHLSQNNPALLKNYTFVRQNTGTKRCNVSPQ
FT                 KPGTSVGICVKNGMKFLQLHQKPMIAMEAVAIQLTYRDRQNREKNIIFASL
FT                 YNRPQDKLHVQDLNDLITSFNVIPNCSEIIIGCDLNAKHPSWNKPFYNHRH
FT                 SNQSGTTLYNWISRNLNLNILSSNEPTRPNLNDKPDSSIDLFLTSTTTSIE
FT                 SGCRVIKDFPSDHFSIQIIIKIAQSRLVYNDSKSIYNFNKINPLLWNKLIL
FT                 QNVPSIPIDTNITSPEIDNHIKTLSDAIAKTIENPLVIPKLEFKPNSPNRH
FT                 TINLSKPCLKLIKEKRTLRRTLFRKITSLTIEEKTIIKQTIKEIDIQISNH
FT                 IELIELKIIGKRLAAINPSKISYKSIKNINPQIPKQEQFCHHIILNDNEKN
FT                 SIDISIDQHTFPTLTTDFAKVNALAWSFEQTHKQNHHMTLSSESLRAHRSQ
FT                 IESTITELTSTPPNHIITFDNQNTAEGEWEGSEELGFTNAEELLDILKCKN
FT                 NKKGLGHDMTSNFILKCFNIPLLRHLSIIFNHCIIHSYFPLYWKHCKIIPI
FT                 LKPNSNPNHLRSYRPIAILSAISMLFEKIIMKNLIKQVKSKNTLKNEQYGF
FT                 REGVTLNHALISANNFIFENIHRRRATIACALDFEKAFDTVWTQGLIYKIK
FT                 NIYRFTLNSTMQIHSYLTDRSFSVTSPDSSENSMTRLIPAGVPQGSILAPL
FT                 LYNIYLADMPSYESPDPTSTTRIEQLIYADDILLLGSGGSVHRTETEMNRF
FT                 LDTLCEYFTKWHLKLNSTKCVSTIYKGPRTCNLYKSAKKFNPKLFIYYDTP
FT                 IQNKKQLKYLGIIYDEKLNFKEHTEYNLQKATMKLKEIHHIFKPIFNPSYH
FT                 SKITYLRSLAYRKLIQPILLYGHVAWMSLSSAQMEHLRKFERHTLRNSIEQ
FT                 QRNPETQHYLSNKKLYNITKTQKLDEMLFKILEKFILXYNIEQNEIPYRHS
FT                 TELVTVNFVRHLDSSGILYDQNRKVIFYNRKFQSLNTNEGLIYLTQ"
XX
SQ   Sequence 5407 BP; 2172 A; 1197 C; 757 G; 1280 T; 1 other;
     tttccaagaa gttgtgtttc cgggaactta gaaaattgtc agaaagcgaa gtttattata        60
     cagatagtga ctgaaaatac aagaatatac agatagtgac tgaaaatatc cagtaatata       120
     cagatagtga ctgaaatttt accaaatacc gtgagtgaaa aacaagatac caaagtggat       180
     ccgagtacat ttaatgagca gatcgctgct tattcaacgt ctttaggcat aaaaaaacct       240
     gaacttatta ataacacaaa aagcaaaaca attaaacatc tgggtaaaac gcgaaatgca       300
     ccttacctaa catcatcaca tctcaccagg aaaattaatc gtgcctcaat cgagccggtt       360
     aatatgtctt tggctacaaa taatatggat ccgacagcaa cacctgagcc caatacctcc       420
     aacattttga aaatggagat cgacctaagc tccataaagc gccagcgcga aaaaaaccgt       480
     acttctgaga acagtgaaga agaggactac tcggaagatt cttacgaaac tgagggggaa       540
     gacgaggaag aactcgaagc cctcatcacc aaagaacagc tagacagcat aatggaggaa       600
     ttagccatcc tacgtcaaga aaaccagcgc ctgaaggacg aacgtgccga atcagcagcc       660
     atcaaaaaca acaaatttgc tctgttaaac aacgacgaca acaagaacaa ccaggacttt       720
     cccaggctcg gaaagccgat cgccaacaaa aagcgatcaa agatgacagc agcgactgcg       780
     acatcacctg tgacaacaac aactgcagta cctaaacaag taaaaaattt accagttatt       840
     gtagttttta atcaaaatcc aaaactttta caaatatgtc tgaaaactat aattaagccg       900
     gaagacttta ttctaaacat tattaacaaa aataggacaa atattaaact tttctcctta       960
     gaagagtttg agaaaaccaa gacactttta actgaacgta acacccgcta tttcacgtac      1020
     acgcccaaac aattaaaacc tcatacggtt attctgaaaa aacttcctcc aagcgtgtat      1080
     gaggaatcgg aaattaaaaa agccctagcc gaatcaatac ctgagcttgt atttctgtcc      1140
     gttaagcagt ttaaggaagt cctctggaaa ataacaattc aaaaatccga ccaaataaaa      1200
     cttattttta aacttaaagc cttactaaac tgcaaaatta tcatagaagc ttataaaccc      1260
     cacgtgaacg aaataaaaca atgcttcaag tgccaacgtt tcaagcacgt tgcctcgaat      1320
     tgtagtatgg aatatagatg cgtaaaatgc attgaaaagc atgagccagg gcaatgcaaa      1380
     attaaaaaag aaaatgaaga taatatgtcg accaataaag tccagtgcat aaactgcatg      1440
     ggaccgcata cggcaaatgc aaaaatatgc cctaaaagga tggagatctt agagaaactg      1500
     aaatgcaaac gagctgaaac taaaaataaa tccactaaaa ttattcacaa agccataaat      1560
     caaagtaaaa caatccaagg gagaagtttc tcctcattgt ttaatcacaa ccccccaaca      1620
     gcatctaatt ctaacataaa aaccacaaac ccagccctac aacagcacat gggtaatgta      1680
     acaaagtcaa aaaatagtca acagataaat gctttaacat ttgatgacgt aaacaatgat      1740
     tccttaaatt tatttgggaa aaatattgta caatgcattg aaataatgca aaatactata      1800
     aaaaaatacc ctaacaacaa tgacgaaagc ctaaaaaaac aaattttatt agactttatc      1860
     ttacaaatag cccagtaaca atgcctttaa aatgtatttt cctgaacgta aatggtatta      1920
     ggcaactaag aaaacgtaat gaacttaacc attttttaaa cacgcatcga cctgatgtca      1980
     tgctaattgc ggaacaccac cttagtcaaa acaacccagc cttgttaaaa aactacacct      2040
     tcgttagaca aaatactggc acaaaaagat gcaatgtatc acctcagaaa ccaggaacgt      2100
     cggtaggaat atgcgtaaaa aacggcatga aatttctaca attacatcaa aaaccaatga      2160
     ttgcaatgga ggcagtagca attcaactaa cttacagaga tcggcaaaac agagaaaaaa      2220
     atataatatt tgcctcactc tataatcggc cacaagataa gcttcacgtg caggacctta      2280
     atgatcttat aacgtccttt aacgtaatac caaattgctc cgagatcatc atcggctgtg      2340
     atctcaacgc aaaacatcca tcgtggaaca aaccattcta caatcatcgc cacagcaacc      2400
     aatctggaac aacgctatac aactggattt cccgaaactt aaacctaaac attctttctt      2460
     caaatgaacc aacccgaccc aatctaaatg acaaaccaga ctcgtctata gacctatttc      2520
     taacctcaac cacaacgtct attgaatcgg gctgcagagt cataaaagac tttccatcag      2580
     atcatttctc aatacaaatt ataataaaaa tagcacaatc tcggctagtt tataatgata      2640
     gtaaatcaat atataatttc aacaaaatca acccactact ctggaacaaa ttaatactac      2700
     aaaacgttcc aagcatcccc atcgatacaa atataacttc accagaaata gataaccaca      2760
     tcaaaacatt atccgacgcc attgctaaaa ccatagaaaa tcccctagtg atcccaaaac      2820
     tagaatttaa accaaatagt ccaaaccggc acacaattaa cctgagcaaa ccatgcttaa      2880
     agctaataaa agagaagcga accctaagac gaacgctatt tcgaaaaata acatccctca      2940
     caatagaaga aaaaaccata atcaaacaaa caattaaaga aatagacata caaatctcaa      3000
     accacataga gctaattgaa cttaaaatca tcggcaagag gcttgcagca ataaacccaa      3060
     gcaaaattag ctataaatct atcaaaaaca taaatcctca aattcccaaa caagaacagt      3120
     tttgccatca cataatactc aacgataatg aaaagaactc catagacata tcaatagacc      3180
     agcacacctt tcccacactt acaactgact tcgctaaagt caatgctctc gcctggtctt      3240
     tcgagcaaac acacaaacaa aatcaccaca tgactttaag cagcgaatca ctcagagcac      3300
     accgttcaca aatagaatct acaataactg agctaacctc taccccaccg aatcacataa      3360
     taaccttcga taatcaaaat acagccgaag gcgaatggga aggttctgag gaacttgggt      3420
     ttaccaatgc tgaagagctt ctcgacattc tgaaatgtaa aaataacaaa aaaggtctag      3480
     gtcatgatat gaccagcaat ttcattttaa aatgttttaa tatacctctg cttaggcact      3540
     taagcattat cttcaaccac tgcattattc atagttactt tcccttatac tggaagcact      3600
     gcaaaatcat ccccatccta aaaccaaact ctaacccaaa ccacctacgt agctatagac      3660
     ctatagctat tctctccgca atcagtatgc tgttcgaaaa aataataatg aaaaacctaa      3720
     ttaaacaagt aaaatccaaa aataccttga aaaatgaaca atatggattc cgagaagggg      3780
     taaccctaaa ccacgctctg atatcagcta acaatttcat ctttgaaaac atccaccgta      3840
     ggcgggctac aatagcctgt gcgctcgact ttgagaaggc cttcgatact gtttggacac      3900
     aaggtctgat ttacaaaatt aaaaatatct atcgatttac cctcaacagt acaatgcaga      3960
     tacatagcta cttaacggac agatctttta gcgttaccag ccctgacagc tcggaaaatt      4020
     caatgactag attgatacct gcaggtgtgc cacaaggttc gatacttgcc cctttactct      4080
     acaacatata cctagcagat atgccatcat atgaatcccc tgacccaact tcaactaccc      4140
     gaatagaaca actaatatac gctgatgaca tcctcctcct gggatctggt ggatctgttc      4200
     atcgaactga aacagaaatg aacagatttc tagacacact atgtgaatat ttcactaaat      4260
     ggcatctaaa actaaatagc accaaatgtg tcagcaccat ctataaaggc ccaagaacat      4320
     gcaacctcta taagagtgcc aaaaagttta atccaaaact atttatttat tacgataccc      4380
     cgatccaaaa caagaaacaa ttgaagtacc taggcataat ctacgatgaa aaactaaact      4440
     tcaaagaaca caccgagtac aacttacaaa aagctacaat gaaattgaag gaaatacatc      4500
     acatctttaa accaatattt aatccatctt atcatagcaa aattacatac ttgcgctctc      4560
     tagcttacag gaagctaatc caacctatcc tactatacgg acacgtagcc tggatgagtc      4620
     taagctctgc ccaaatggaa cacctacgaa aatttgaaag acacactctc agaaattcta      4680
     tcgaacaaca aagaaatccc gaaactcaac attatttatc aaataaaaaa ctatacaata      4740
     taacaaaaac ccaaaaacta gacgaaatgc tttttaaaat acttgaaaaa ttcatcttaa      4800
     amtacaacat cgaacagaac gaaatacctt ataggcactc aactgaacta gtcactgtaa      4860
     actttgtaag acatctagac tctagtggaa ttctttacga tcagaataga aaagttatat      4920
     tttataacag gaaattccaa tcgctaaaca caaatgaagg tctaatatac ctcactcaat      4980
     aataaaaccg acgtacattt attaactgat aaactaaaat cctcctgtat atatacccca      5040
     cccctgaaca tgtaaatagc ccccctcccc tctcctctta ataatattta agaactagat      5100
     ataagcaaaa ccaaaacaac aacactcacg atctcaggtt ttttcaaaaa aaaaaatttt      5160
     tttccctgaa cactctaact cttaaagaac aaatacacat acaaaacaaa ctttaatgta      5220
     agtacaaaag tacaaatgta aagaaactag tgcctaatgc cccgaaaagc tataagcgca      5280
     gggctaaact acaaataaat ttaagtaact gtaaacatga aaattgtcac acatgtatta      5340
     ctcctttaaa tgtaaactga accattttga aaatattgac aataaagaaa gaaagaaaga      5400
     aagaaag                                                                5407
//
ID   Jockey-13_AAe repbase;    DNA;    INV; 4276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4276
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1379-1379 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..1381
FT                 /product="Jockey-13_AAe_1p"
FT                 /translation="MGGKRKKKSLSPNKSQSSPLSKKDKRSSASSGVDFGR
FT                 ELNASQSNMYALLDDISDRDDDQCSIHTSATPNERVPRSQVEARAIVSGTV
FT                 KANSPPMKKKLPPLVVKSLPLEKLKKVMQAINVRAEFRLTGMGIKLIVKSD
FT                 QEFSKAKTYLSKSGAEFFTHDVAAEKPFKAVVRGLSQMDTNEILCELKDVY
FT                 KLQPLAVFNINRRAATSSTKYRDCLYLVHFAKGSATLGALKAVRTLNDCIV
FT                 KWEAYRGPNRSVTQCMRCLNFGHGTRNCNLKPRCNFCSQEHWTENCVLEGA
FT                 CEFRCANCSGQHMSTDKRCPKLEEYQRIRKQATTRNQPNQQKKKKPNLINL
FT                 DEFPELPPPMSSSGWQRSRSPPRAPPGGIPPGFRWGNPNSGSEPVNQGFQQ
FT                 PEALPTSVSSTIAHLAALVAEMQKMMMQMMQMFLSFNIQRQGC"
FT   CDS           1356..4004
FT                 /product="Jockey-13_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ASTFNVKVVNWNARSLAAKHLEFIEFLEANRIDIAFI
FT                 TETHLKPSVSFYLPEHSVFRLDRPGVQHGGGVAIAVRKGFKCRALPDYRLS
FT                 TIEAVGVELLTPTGPIEIVAAYNPLQSKLSDGSSIRLKNDLQKLTRRMGKF
FT                 ILAGDFNARHSLWGNARNNRNGMVLAEDLQAGHYVVLHPDSPTHFSPAGAG
FT                 STLDIVITNISDNRSNLVAMTELPSDHLPVVFEVEHAINPRQQYRRKNYHR
FT                 ANWPQFQQLIEDRSNENPVLVTADDIDNALRELTDTIGEAESRFIPSTAIV
FT                 SKFTNIDSTTKRIISLRNCIRRQYQRTLNPSRKILYKKLNRIIANRVSKLK
FT                 NXQFNTDLKNLPNYSKPFWRLAKVLKTKPKPIPPLREPSKICLTASEKANA
FT                 ISKQFLASHNLGRDIVGPMEPLVTDSVNRLADQPNALPADKRVTSAELRTS
FT                 IEFTRNMKAPGFDGVFNIVLKNLGPKAINVLVNVFNRCLEIGYFPSSWKLS
FT                 KVVPILKPGKDPTNPASYRPISLLSSISKVFERVVYRRLLDHTEANNILLD
FT                 VQFGFRRGHSTVHQLQRVTNQIRRSKQLSKTTVMALLDIEKAFDNVWHAGL
FT                 THKLIQQNCPAYLVKIISDYLAGRTSQVSVSGTLSSPYPIPAGVPQGSILG
FT                 PILYNLYTSDIPPLPAGGSLSLFADDSAISYTGRVIRALVNKLQKGLDAYV
FT                 EYLKNWKIRVNATKTQVIVFPHRNTDRLKPNGKIKVLGNEVDWVDVVRYLG
FT                 LLMDSKLLYRPHVDDRVLKSTSMLKRLYPMINRRSKVSSTNKLAIFKQVVL
FT                 PMLLYGSPVWMGCARTHIRKLQTVQNKYLKMILKLPRHTRTAEVHRLANLD
FT                 PIAERLDNVASNHRTRAVRSEWPIIRNIYV"
XX
SQ   Sequence 4276 BP; 1224 A; 1131 C; 1023 G; 891 T; 7 other;
     ttcagttttg accttcgaag tgatcacagt aaaagttcaa gtgtaagttc gaaaagttat        60
     cgcgagtgca atgggtggca agaggaagaa gaagagcctc tcacccaata aatcccaatc       120
     cagccccttg tcgaagaaag acaagcgatc cagtgcctcc agcggagtcg actttggccg       180
     cgagctgaat gccagccagt cgaacatgta cgcgctgttg gatgacatca gcgaccgcga       240
     cgatgaccag tgctccatcc acacttcggc caccccgaac gagcgagttc ctcgttccca       300
     ggtcgaagcg agagcgatcg tcagcggtac agtgaaggcg aattctcccc cgatgaagaa       360
     gaagctgccc ccgttggtgg tgaaatctct tccgctcgag aagctgaaga aagtgatgca       420
     agctatcaac gtccgagccg agttccggct caccgggatg ggcattaagc tcatcgtcaa       480
     gtcggatcag gaattcagca aggcgaaaac gtacctctcc aagtctggtg cagaattctt       540
     cacccacgat gtggcagcgg agaaaccatt caaggccgtc gttcgcggtc tctcgcaaat       600
     ggacaccaac gaaatcctgt gcgagttgaa ggatgtgtac aagctacaac cgctggctgt       660
     cttcaacatc aacaggaggg cggcaacctc gtcgacgaag tatcgcgatt gcctgtacct       720
     ggtacatttc gcgaagggaa gtgccactct cggagcactg aaagcagtgc gcaccctcaa       780
     cgactgcatt gtcaagtggg aagcgtaccg tggaccaaat cgcagcgtga cgcagtgcat       840
     gcggtgcctc aactttggcc atggcacccg caactgcaac ttgaagccaa ggtgcaactt       900
     ctgttcacag gagcattgga ccgaaaactg cgttctcgag ggtgcttgtg agttcagatg       960
     tgccaactgt tctggacagc acatgtcgac cgacaagcgg tgcccgaagc tcgaggagta      1020
     ccaacgaatt cggaagcaag caacaacaag gaaccagccg aatcagcaga agaagaagaa      1080
     gccaaacctc atcaacctcg acgagttccc cgagctacct ccaccgatgt catcctccgg      1140
     ttggcaacgt tcacgttcgc cgccaagagc tccccctggt ggcatcccgc ccggattcag      1200
     gtggggcaat ccgaatagtg gctcagaacc agtcaaccaa ggcttccagc aaccggaggc      1260
     ccttccaaca tctgtgtcca gcacgattgc acatctcgcc gctctcgttg ctgagatgca      1320
     gaaaatgatg atgcagatga tgcagatgtt cctgagcttc aacattcaac gtcaaggttg      1380
     ttaattggaa cgcccgctcc ctggcggcca aacatctaga gttcatcgag tttctagaag      1440
     ccaaccgaat cgacatcgca tttattacgg aaactcatct gaagccgtcc gtaagtttct      1500
     acctgccgga gcactccgtc ttcagactgg atcgccctgg tgtacaacat ggtggtggcg      1560
     tagccattgc cgttcgcaag ggattcaagt gccgtgcgct gccggattat cgattgagca      1620
     ccatcgaggc ggtcggagta gaactgctta caccgaccgg gccaatcgaa atcgttgcag      1680
     cctacaatcc actgcagagc aagctctcgg atggttcctc cattcgcttg aaaaacgatc      1740
     tccagaagct gactcgacgg atgggtaagt tcattctggc tggcgacttc aatgcccgtc      1800
     actcgttgtg gggcaatgcg aggaacaaca ggaacggtat ggtgcttgcc gaggaccttc      1860
     aggcagggca ctatgtcgtt ctccatccgg attctccaac acacttctcc ccggccggag      1920
     ctggttccac attggacatt gtcatcacga acatctcgga caaccgctcc aacctggtcg      1980
     ccatgacaga gctgccatct gaccacctac cggtggtttt cgaggtggaa catgccatca      2040
     atccacgaca acagtatcgg aggaaaaact accatcgtgc gaactggccc cagttccagc      2100
     agctcatcga ggatcggtcc aatgagaacc cggttctggt gacagcggac gacatcgaca      2160
     atgctctccg agaactcact gataccattg gtgaggcgga gtcccgattc atcccatcaa      2220
     ctgcaatagt aagtaagttc accaacattg acagtaccac gaaacggata atatccctta      2280
     gaaattgcat tagaagacaa tatcaaagaa ccctcaatcc atcccgtaaa attctctaca      2340
     aaaaacttaa cagaatcatt gccaatagag ttagcaagct taaaaacmaa cagttcaaca      2400
     cagatctcaa aaatttacca aactactcca agcccttctg gcgtcttgca aaagtgttga      2460
     aaacaaaacc caaaccaata ccacctctca gagaaccaag caaaatttgc ctaacagcca      2520
     gtgaaaaggc aaacgccatt tcgaagcagt ttctagcctc gcataatctg ggtcgggata      2580
     tagtcggtcc gatggagccg ttggtaaccg acagcgtcaa ccgattggcc gatcaaccaa      2640
     acgcgcttcc agctgacaag agggtaacat cagcggaact gaggactagc atcgagttca      2700
     cgagaaacat gaaggctcca gggttcgacg gagtgttcaa catagtcctc aagaaccttg      2760
     gccccaaggc gatcaacgtt ctggtcaatg tcttcaacag atgcctcgag ataggatact      2820
     tcccttccag ctggaaacta tcgaaggtgg ttcccattct gaagccgggg aaggacccca      2880
     ccaatccggc cagctaccga ccaatcagcc tactctcgtc aatcagcaag gtgttcgaga      2940
     gggttgtgta ccgtaggctt ctggaccata ccgaagcgaa caatatactg ttggatgtcc      3000
     agtttggatt caggcgtggg cactcaacgg tacaccaact gcaaagggtg accaaccaga      3060
     tcaggcggtc gaagcagttg tcaaagacaa cagtcatggc gttgctagac attgaaaaag      3120
     cttttgataa tgtctggcac gccggactca cacacaagct aattcagcag aactgccccg      3180
     cctatctggt gaagatcatc tccgactacc tcgccggaag aacatcccag gtcagcgttt      3240
     ccggtacact gtcgagtccg tacccaattc cagccggagt gccacaaggc agtatacttg      3300
     gtccgatact atacaacttg tacacttcgg acatcccacc gcttccagct ggaggctccc      3360
     tatcgctgtt cgctgatgac tcagcgatta gctacaccgg gcgggtcatc agagcgctag      3420
     tgaacaaact ccaaaaagga cttgatgcct acgttgagta cctgaaaaat tggaagatcc      3480
     gggtgaacgc caccaagacc caagtcattg ttttcccgca taggaatacg gaccgcctca      3540
     agccgaacgg gaaaataaaa gtgcttggca acgaagtaga ctgggttgac gtggtgagat      3600
     acctgggtct tctgatggac agcaagctgc tctaccgacc gcatgtcgac gatagggtgc      3660
     tcaagagcac atccatgctg aaaaggctgt acccgatgat caatcgccga tcgaaggtct      3720
     ccagcaccaa caaattggcc atcttcaaac aggtagtcct tccaatgttg ctgtacggct      3780
     ccccggtctg gatgggatgt gcccggaccc acattaggaa gctacaaacc gttcagaaca      3840
     agtacctgaa gatgattctg aagctcccac ggcacacaag gacggccgag gtccatcgac      3900
     tagcgaatct cgacccgatt gcggaaaggc tggataacgt agcttcgaac catagaacca      3960
     gagccgttcg atccgaatgg ccaattataa ggaacatcta tgtttaacat gggttctctg      4020
     tacatattgt aaatagtgta aatagttagk agtagtttag atttagattt agtatamtga      4080
     aacaaaacaa tgaaatgttt aaaaattaac attaatattc aaacaacaaa acawaaacaa      4140
     gttagaaata actaaatgwa aacwwccaaa gcctgaaaag ctctttagct gtatcactta      4200
     gaatgtaagg aaaatgattg tttcaacaag aaaaaatgaa atacagacat attaattaaa      4260
     aaaaaaaaaa aaaaaa                                                      4276
//
ID   Jockey-13_BTa repbase;    DNA;    INV; 5308 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5308
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 957-957 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           219..2078
FT                 /product="Jockey-13_BTa_1p"
FT                 /translation="MSKQQPHPTSANEKDINTNEEVTNSFSNDEISAVSAI
FT                 VNLKQSCNHQFIPSNEEDRIHILSLKSAAAQVVNIFETLKSENDNRKREND
FT                 SIKAENDSFKKTIQNLSQRLNALENQASNSPAKIRSKTTKIVKSLAENVQP
FT                 NEENTTSSGKFDILAEKLADEEDNMSVEEENSSSLDSEEKIVKQETSWITV
FT                 DYNKKKTKKKRTKPTSPSSTSEDEISDPEYRSRRKIFKKINNQASKITKEN
FT                 GQINNSGSNIDKSSNSNNSVNTTNPKNNNTESDNTKTKTLPPPPIKIIGIK
FT                 SFENLQKILKVASEKEEYMIRFLGDDMWKINPQTETAFKNIRENLNKNNIQ
FT                 WYTHADKNNRNIKVMCRGLPTSLNPDEIVQDLKEKNFKIISAVCMQKRIEI
FT                 KNKNKITENTENKDNPSEPKNTDNNPPQKIIKKYEYIKIPLYQLDFDHNES
FT                 AEKIYNIKAILHTIVKIEPIKINPKIIPQCKRCCGYFHTANFCQKSPRCVK
FT                 CAGKHYSHECEHKGMIANPKCAICGNIGHPASYRGCPVAKELQNTRKKQLK
FT                 MKKQNSTSAHTTKTVIKNSQPKKLEKTFAQATQGNANPSEKLIETLLKTIE
FT                 SLNEQIISLNNKISKMETSGRR"
FT   CDS           2142..5000
FT                 /product="Jockey-13_BTa_2p"
FT                 /translation="MSFVINNMNVFSNTNIDNLSITDLNDDIDFTDVIKLK
FT                 ARAKTEALTIIAWNCGGLTRTKAEELNVTLRDFGVDIVLISETWFTKNDFK
FT                 RYFEGYKMYNSFHPSNKKRGGSSILIKNNIEHNLTKIIQTDIFQSVVIKLP
FT                 SAIGDFNLASIYAPPNNIITTANFLELFRELGQSFLIGGDFNSKNPIWGSR
FT                 LTNPKGKNLFEAVKKINGNFISPGKPTNFPYNQSHKPDIIDFFIFKNLNLI
FT                 NKTVCDTLHSPIVGHAKINLTIHMNPILINKPPAICSRKTNWTKFREDLEK
FT                 LIFNNIKIDTPAKIDEETEKLVEQIQHCAKINTPIAINEIRPYKIPKNLLN
FT                 LIRSKRKIQRKYSYTQDPEDKAHFNRLNKLVRKHTQSFLNNKFERFLLSLS
FT                 DKKDKDYTLWAATKYLKRPKQLNFPIKKKDGTWAETDKDKAEILADHFENT
FT                 FKPHNFAEIEGEHESENVGDESPPKSKKVKKIPPSKIKTITPSEIKREIQG
FT                 KIKIKKAPGFDKISGLLLKNLPNKAIMKLVCIFNAVIKIKYIPQQWKIAEI
FT                 FVLLKPDKSPAETSSYRPISLLPVISKLFEKLYIKRLNEIVGKKHLIIDAQ
FT                 FGFRAKHSTIEQLHRVTSYIENALEKGKFCVAVFLDVAQAFDRVWHERLVE
FT                 KLFKILPCNHVELLSSFLEGRQFRIRYENAISSLRPIGAGVPQGSCLSPLL
FT                 YSLFTSDIPQPRGEGKMGIYADDTLVMDSSKSYREARQNVQLHLNKIDRWT
FT                 TNDKIKLNATKSIEVVFTNRKFIHKPLHLGENIIPREKVSKYLGLHLDSKL
FT                 RWKEHIKKKVAQVKLKFLNMFWLLGKKSKLDLRLKLLLYKSMLRPIWSYGC
FT                 QLWGCAAVTNLNQIEIIQMKILRNIAKARWYERNVDIRADLNIDSVEDYIT
FT                 KLYTSYENRLHNHPNPEALALLEKSENVRRLKRRKTFELGIQGFSKLFP"
XX
SQ   Sequence 5308 BP; 2155 A; 1037 C; 795 G; 1321 T; 0 other;
     caaatcagtt cagataaaac ctctgtgttg tgcggacctc tctcactgaa acgctctctt        60
     atcaacagat ttaatctgat aaacccagtg cagctcaatc attacagtgt tgaacattta       120
     caaacttaaa tgggcattat gccataagct cctaatacaa actgttgcca cactcggggt       180
     ggcaacaagt gaatcaggtg acaaagccta aaactaagat gtcaaaacaa caaccacacc       240
     ctacctctgc caacgagaag gacataaaca caaatgaaga ggtaacaaat tccttttcaa       300
     acgatgaaat atcggctgtt tcagctatag taaacctaaa acaaagttgt aatcatcaat       360
     ttatcccttc aaatgaagaa gatagaatac atattctatc acttaaaagt gccgcagctc       420
     aagttgttaa cattttcgaa actctcaaat cagaaaatga taacagaaaa agggaaaatg       480
     atagcattaa agcagaaaat gatagtttta aaaaaactat ccaaaatctc tcacaaagat       540
     taaacgctct ggaaaaccaa gcctcgaaca gcccagctaa gataagatct aaaacaacaa       600
     agatagtcaa atccttagca gaaaatgtcc aacctaatga ggaaaataca acctcctcag       660
     gcaaattcga cattttagca gaaaaattag ctgatgaaga agataacatg tctgtcgaag       720
     aagaaaattc gtcaagccta gattctgaag agaagatagt taagcaagag accagctgga       780
     ttacagtgga ctacaacaag aaaaaaacta agaagaaacg aacaaaacca acctccccct       840
     cctcaacttc cgaagacgag atctctgatc cggaatacag aagcaggaga aaaatcttca       900
     agaagataaa caaccaggcc tccaaaataa ccaaggaaaa tggacaaatc aacaactccg       960
     gctccaatat agataagtct tctaattcaa ataactctgt aaataccaca aaccctaaaa      1020
     ataacaatac tgaatctgat aacactaaaa caaaaacctt accccctccc cctataaaaa      1080
     ttattggaat caaatctttt gaaaacctgc aaaaaattct taaagtcgca tctgagaaag      1140
     aagaatatat gattcgcttt cttggagacg acatgtggaa gataaaccct caaactgaaa      1200
     cagctttcaa aaatatcaga gaaaatttga ataaaaataa tatccaatgg tatacacatg      1260
     ctgataaaaa taatagaaat ataaaagtta tgtgtagagg actcccaaca tccctaaatc      1320
     ccgatgaaat agttcaagat ctaaaggaaa aaaacttcaa aatcatttca gcagtttgta      1380
     tgcaaaaaag aatagaaatt aaaaataaaa ataaaataac tgaaaataca gaaaataaag      1440
     ataatccttc cgaacctaaa aacacagata acaacccccc tcaaaaaata attaaaaaat      1500
     acgaatacat aaaaattcct ctttatcaac tagactttga tcacaatgaa tcagctgaaa      1560
     aaatctataa tattaaagca attttgcaca caatcgtaaa aatagaaccc attaaaatta      1620
     accccaaaat catccctcaa tgcaaacggt gctgtggata tttccataca gcaaactttt      1680
     gccaaaaaag ccctcgctgc gtaaaatgcg ctggcaaaca ttattctcat gaatgtgagc      1740
     ataaagggat gattgcaaat cctaaatgcg caatctgcgg caacatcgga cacccagcaa      1800
     gctatagagg ctgccctgta gcaaaagaac tacagaatac cagaaaaaag caactaaaaa      1860
     tgaaaaaaca aaattcaacc tcagctcata caactaaaac agtcataaaa aattcccaac      1920
     caaaaaaact ggaaaaaact tttgctcaag caacccaagg aaacgctaat ccttcagaga      1980
     aattaataga aacgctctta aaaacaatag agagcttaaa cgaacaaatt atatccttaa      2040
     ataacaaaat tagcaaaatg gaaacctcag gcaggagatg aaagattcct tttctatatc      2100
     ttcattatct tatatgtctt ttctcatttt gtcttattat tatgtctttt gtaatcaaca      2160
     atatgaatgt cttttcaaac actaatattg ataatttatc gattacagat ctaaatgacg      2220
     acattgactt tactgatgta atcaagttaa aagcacgtgc caaaacggaa gctttgacaa      2280
     taatagcttg gaattgcgga ggactgacac ggacaaaggc cgaggaactc aacgtgacgc      2340
     taagagactt cggtgtggac attgtcctca tatcggaaac atggttcacc aaaaacgatt      2400
     ttaaaagata tttcgaaggg tataaaatgt acaactcttt ccatccctcc aacaaaaaaa      2460
     gaggaggatc atcaatctta attaaaaaca acatagagca taatttaacc aaaatcattc      2520
     aaacagatat cttccaatca gtagtaatca aactgccatc tgctattgga gactttaatt      2580
     tagcatcaat atacgctcca ccaaataaca taatcaccac cgcaaatttc ctagaactct      2640
     tcagagaact aggacaatct tttttaatag gcggtgactt taattcaaaa aaccctatct      2700
     gggggtctag actgacaaac cccaaaggta aaaatctttt tgaagctgtc aaaaaaataa      2760
     acggtaattt catttcacct ggtaaaccca ccaattttcc atataatcag agtcacaagc      2820
     ccgacatcat agactttttt atatttaaaa acctaaatct cataaacaaa acagtttgtg      2880
     atactctcca ttccccaata gttggacatg caaaaattaa tctaactatt catatgaacc      2940
     ctatacttat caacaaacct ccagcaatct gttccaggaa aacaaactgg accaaattta      3000
     gagaagacct agaaaaatta attttcaaca atattaaaat agacactcca gcaaaaattg      3060
     atgaagagac agaaaagctg gtggagcaaa tccaacattg tgcaaaaatt aatactccaa      3120
     tagccatcaa tgaaattaga ccatacaaaa ttcctaaaaa tcttttaaat ctaattcgtt      3180
     caaagagaaa aatacaaaga aaatactcat atacccaaga tcctgaagac aaagcccact      3240
     ttaacaggtt gaacaaatta gttagaaaac atactcaatc ttttttaaat aacaaattcg      3300
     aaagattttt gttgtcatta tctgataaaa aagataaaga ctacacgctc tgggccgcaa      3360
     ctaaatacct taaaagacca aaacaactca attttcctat caaaaagaaa gatggaacat      3420
     gggctgaaac agataaagat aaagcagaaa ttctagcaga ccatttcgaa aacactttta      3480
     aacctcataa tttcgcagaa attgagggtg aacatgaatc tgaaaatgtg ggtgatgagt      3540
     caccaccgaa gtccaaaaag gtcaagaaaa taccgccatc aaaaatcaaa actataactc      3600
     cctcagaaat taaaagagaa attcagggca aaataaaaat aaagaaagca cccggcttcg      3660
     ataaaatttc aggattactt cttaaaaact taccgaataa agccatcatg aaactggtct      3720
     gcatatttaa tgcagttata aaaataaaat atatacctca gcaatggaaa atcgcagaga      3780
     ttttcgtact acttaagcca gataaatccc ccgcagaaac tagctcttat agaccaattt      3840
     ctctacttcc agttataagt aaattatttg aaaaattata cataaaaaga cttaacgaaa      3900
     tagtaggtaa aaaacaccta ataatagatg ctcaattcgg tttcagagct aaacattcga      3960
     ccattgagca gctgcacaga gtcaccagtt acatagaaaa tgctctagaa aagggtaaat      4020
     tttgtgtggc ggtttttctt gacgtagcgc aagcgtttga tagagtctgg catgagcgtc      4080
     tcgtcgagaa actatttaag atactcccat gtaatcacgt ggaactctta tcttcatttt      4140
     tagaaggaag acaattcaga ataagatatg aaaatgccat ttccagctta agaccaatag      4200
     gagcgggagt tccacagggt tcctgtctat cccccctcct ctattctctc tttacatcgg      4260
     acatcccaca gccgagagga gaagggaaga tgggaatcta tgccgacgat acgctcgtga      4320
     tggattcatc caagagttat agggaggcac gacaaaatgt ccaattacat ctaaataaaa      4380
     ttgatagatg gacaacaaac gataaaataa aactcaatgc tacaaaatcc attgaagtag      4440
     tttttacaaa tagaaaattc atccacaaac ccctacactt gggagaaaat ataattccaa      4500
     gggaaaaagt ttctaaatat ttgggattac acctggattc caagctcaga tggaaagaac      4560
     atattaaaaa aaaagtagca caagtaaaac tcaaatttct aaacatgttt tggctacttg      4620
     ggaaaaaatc aaaattggat ttaaggttaa aacttttact ctacaaatcg atgttgaggc      4680
     cgatatggag ctatggctgc caattgtggg gttgcgcagc cgtaacaaac ctcaatcaaa      4740
     tcgaaattat ccaaatgaaa atcttaagaa acattgctaa agcacgctgg tatgagagga      4800
     acgtagatat aagagccgac ctcaacatcg attcagtaga ggattatatc actaaattat      4860
     atacctctta tgaaaaccga ctacataatc acccaaaccc agaagccctc gccttactgg      4920
     aaaaaagtga aaatgtgaga agactaaaac gaaggaaaac ctttgagctt ggaatccagg      4980
     gtttttcaaa acttttccca taatcaacct cacgtgcctc cttatgatcc ttggacatat      5040
     caggagtaac taggtctttg gacgggtagc ccgtcgtaac ccaaataaat caaaaagaca      5100
     ttcttattct gtaataaaaa tgttttatca tttcacacac ctgttataaa tttaggtagt      5160
     tattaagtta aaatcaataa caacttagta taatttagcc actaagtttt aaaataagct      5220
     gttaaaagac tcaagtaagt ctaatagcaa tttcttgtac attgttcttt gttttgtgca      5280
     aataaaaaaa aaaaaaaaaa aaaaaaaa                                         5308
//
ID   Jockey-13_DAn repbase;    DNA;    INV; 5012 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5012
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 394-394 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           466..1413
FT                 /product="Jockey-13_DAn_1p"
FT                 /translation="HSILHGNCDNCAIXSVRLTETIGNNNGYPIQCSSDIA
FT                 SPTFSGHESIASPTFDGYATISSTQLSDAATKLKVGQRNLLKKRKKPLSPT
FT                 MNSKKVHRELKFDSPSESTSQESSSNRFALLDMEVDLNSNTHAEERTINAE
FT                 GSPTRSPMAVQENISDDNVDTDDLGNRSQQNDSNRNYNPKENAKPPQIVLS
FT                 IANLNDLFDLISEVTSLDNVTVKVNQGVTARIFPKDSTTYRAIVDHFDRME
FT                 IEFHTYQMKEEKPHRIVVKGLHHSTLTTEIVANFKTFGFDALQVHNPRSRS
FT                 NHDVKLNIFFINIKPCAELMLYMI"
FT   CDS           2225..4873
FT                 /product="Jockey-13_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLRAHQRVDILLLSELRLNRGEIVKIYGYSFYPAYKP
FT                 ARHNHGTGGAAVLVRSSLSHFPQSVIETQTIQMSSIKVDTGLGIMVVCAIY
FT                 CPPRNRIEERHFTDILASCGQRYLVGGDWNARHWMWGDTYNSPRGRELAES
FT                 TVVTGAKILATGSPTRYPYVPGHTASCIDFALYHGILDSQISIGQNWDLDS
FT                 DHIALVVNLQTNGVQIRPSPRLITSRTDLNTFKQHLETSFQLNSVLNSRED
FT                 IENAVDILTDNIYRAATASTPPEPVLRPISYGIVLTREARELIKRKRRLRR
FT                 RAIRSQDPLDRNRWHQAERQLRTVLDELRSDFFEQKLSSMDYTVDANYSLW
FT                 KCTKSLKRQPFRQVPVRCPDGELAKNELEQANAFGQHLEDRFTPFNFASVE
FT                 QTRETHQSLETPLQMSLPIKPIRVEEISDVIQSLPKNKAPGIDRICHATLK
FT                 ALPTKAILFIALIFNAIIRIQVFPKQWKLAAIMMIHKPGKPEVDPESYRPI
FT                 SLLPCLSKLWERLIANRVKRIMTENNILPDHQFGFRGGHGTVEQVHRLVQH
FT                 ILQAFDDQEYSNAVFIDMQQAFDKVWHDGLLLKIKNLLPAPYYGLFRSYLE
FT                 GREFKVKVKDTYSDNFLMRAGVPQGSVLGPLLYSLYTADIPIPNSQHMVAP
FT                 SKALIATYADDIAVIYNYRCHREASNGLQEYLFTLAAWCKRWNLKINPQKT
FT                 TNVCFTLKRLIINTPQIQLEGVTLEQQNEAKYLGITLDKRLTFGPHLKSTT
FT                 KKCNMRVQQLRWMISKRSTMPLRCKRAVYVHCILPMWLYGVQIWGIAAKSN
FT                 YKRIQVLQNRMLRTITGCPWYVRGSTLHRDLNVHTVEEQINRHTSRYSDRL
FT                 LRHRSLLARNLLPARPLRRLKRLGFAKTLN"
XX
SQ   Sequence 5012 BP; 1651 A; 1074 C; 1001 G; 1280 T; 6 other;
     caaagaattg tgagcaaaat aattttttgt gttatattwa tttggaaaac aagaccaatc        60
     ctcttgcgaa aataccattg actggtttgg atgctgtctt gcacagtgtc ggcaactgaa       120
     aaatacaaaa cactttactg cagtgcgaag aaactgcatt cttgcccatt gggcaacaca       180
     tcacccctca cgtggtgcgt ggctgcacac gaggggtaat amagacagcg cagaagaagc       240
     cttgaaggaw ctaagcaaac tcttgcctat tgtaaatgga tggacattat tctcactctc       300
     agcttagcaa taagcaaact aattacgaaa aaatgtacca cgttgctgga aaaacaccct       360
     cggagatcag ggaagaaatc atcattgctc aacgctcaca gagctctaag acccagaaca       420
     tcagcacagt gaccacaacg ctaaatttac tagtgctaca agtaacacag tattctccac       480
     ggcaactgcg acaactgcgc aattagmagt gtgcgtctta ctgagaccat aggcaataat       540
     aatggttatc ccattcaatg ctcatctgac attgcttctc caacattcag tggacatgag       600
     tcgattgctt ctccaacttt cgatgggtat gccacaattt cttctacaca acttagtgat       660
     gctgctacca agttgaaggt tggccaaaga aatcttttga aaaagaggaa gaaaccacta       720
     tcacccacta tgaactctaa aaaggtgcat agagaactga agtttgattc accctcagaa       780
     tcaaccagcc aggaaagctc cagcaataga tttgccttac tagacatgga agtggaccta       840
     aacagtaaca cacatgctga ggaaagaaca atcaatgcag agggaagccc tactagatct       900
     cctatggctg ttcaagaaaa tatatctgac gataatgtag acacagatga tttaggcaat       960
     agatcccaac agaatgattc taatagaaat tataatccta aagaaaatgc aaaaccaccg      1020
     caaatagttt taagcattgc taacctaaat gatctatttg acctcatttc ggaggtcact      1080
     agcttggata acgtaacagt taaagtcaat caaggagtta cggctagaat atttcccaag      1140
     gactctacaa cttatagagc tattgtcgac cattttgata gaatggaaat tgaattccat      1200
     acataccaaa tgaaggaaga gaagcctcac agaatcgtag ttaaaggact tcatcatagc      1260
     acactaacta ctgaaattgt tgccaatttt aaaacatttg gcttcgatgc tcttcaggtg      1320
     cataacccaa gatcaaggtc gaaccatgat gtaaaattaa acatattttt tattaatatt      1380
     aagccttgcg cggaattaat gctatatatg atatagtaac attgtgtcgc caacgagtga      1440
     gaattgaaag gatgcgcaaa tcatcagaaa ttgctcaatg cacgcgatgc caagaatttg      1500
     gccacacagc taagtactgt cgtcgacacc caaattgtgc tcgatgtggc gaagaccatt      1560
     ttacaaagca atgtgttcga ccccaagatc aaccgccaat ctgcatgcac tgtggaggca      1620
     atcattcggc aagctacaag ggttgtcagt cctatcaaaa ttacctcagg cgatctatgg      1680
     gttctgcaaa gaagcaaaca acgcgacaac aaccacaaca acgtcatcag caacaacagt      1740
     caactcgaca acaaatactc cacatatttc tgcaaccaat agtggaggtt tatcttatgc      1800
     ttcaatagta agaaatggaa atgaaccagc tcaacgccgt ctacatgatc tccaaggcag      1860
     tcacaagtac acaaatcgaa ggaaaatgtg caacaacaat atgcgactga tgttcaggca      1920
     attttagagc aacagcaaca gctatttatg aaatggcaac aacaactcca agaaaagcag      1980
     cagcagcaat tccttatgtg gctaaggcag cagcatcaag aacaacaaat gcaaaacaag      2040
     ctgaacagtc aacgacttga acgtcttgaa aatatggttt ttgaaatggc maactcgatc      2100
     aagcaatgga ctggagataa atcacttctt cagcttccca acaacgcttc agcctcacaa      2160
     tgaacacact caaaattctt atttggaacg tcaatggcat tttaggtaaa gccagagaaa      2220
     ttgaactctt cgcgcacacc aacgagttga tatcctactc ttaagtgaat taaggctcaa      2280
     tcgaggagaa attgtcaaaa tttatggata ttccttttat ccagcataca aaccggcaag      2340
     acacaatcac ggcaccggag gagcggcggt attggtaagg agctctctta gtcattttcc      2400
     acaaagtgtt attgaaacac aaaccattca aatgtcctct atcaaagttg acacaggttt      2460
     gggtatcatg gtagtatgcg caatatactg tcctccaaga aacagaattg aagaaaggca      2520
     tttcactgac atactcgctt cttgtggtca gaggtatctg gtcggtggtg actggaatgc      2580
     tagacattgg atgtggggcg acacttacaa ttcaccaaga ggacgcgagc tagctgaatc      2640
     cactgtagta acaggggcta aaattcttgc cactggttca ccaactagat acccttatgt      2700
     acctggccac acagcttctt gcatagactt tgcattatac catgggatac tggattctca      2760
     aataagtatw ggccaaaact gggatttgga ctcggatcac atagctctcg ttgttaatct      2820
     gcaaacaaat ggtgtacaga tcagaccaag ccctcgttta attacaagcc gaactgatct      2880
     caatactttc aaacaacatc ttgagacctc ctttcaacta aattctgttc tgaactctag      2940
     agaagacatc gagaatgcag ttgacattct tactgataat atatatagag ctgctactgc      3000
     ttcaacgcca ccagaacctg ttcttcgtcc tataagctat ggcattgttc ttacaaggga      3060
     ggcgagagag ctaatcaaga gaaaaaggcg ccttcgaaga agagcaattc gttctcaaga      3120
     tcctttggac cgaaatagat ggcaccaggc tgagaggcaa ctacgaactg ttttagatga      3180
     actccgaagc gattttttcg agcaaaagtt atcctctatg gactataccg ttgacgcaaa      3240
     ctactcacta tggaagtgca caaaatcgct taaacgacaa ccttttagac aagttccagt      3300
     ccgatgtcct gatggtgaac tggcaaaaaa tgaattggag caggctaatg cttttggcca      3360
     gcatctagag gatcgcttca ctccctttaa ctttgcatcg gtagaacaga ctagagagac      3420
     ccatcagagt ttggagactc cattgcagat gtcactgcct attaagccta taagagtcga      3480
     ggaaatatct gatgtcatac aatctttgcc caaaaacaaa gctccgggta ttgatcgaat      3540
     ttgtcacgct acgttaaagg ccttgcctac aaaagcgatc cttttcatag cattaatttt      3600
     taatgcaatt attaggatcc aagtgttccc aaaacagtgg aaattggctg cgattatgat      3660
     gatccacaag ccagggaaac cagaggttga tcctgagtca tatcgtccaa ttagtctcct      3720
     accctgtttg tctaaactgt gggagagact tattgcaaat cgagttaaaa ggattatgac      3780
     tgaaaacaat atcttgccag atcatcaatt tggctttcga ggaggacacg gcaccgtgga      3840
     acaggtccac agactggtgc aacatatctt gcaggccttt gacgatcagg agtattccaa      3900
     cgcagttttt attgatatgc agcaagcttt tgataaggtg tggcatgatg gcttattgct      3960
     caaaattaaa aatcttttac ctgcgccgta ctatggtctg tttagatcat atttagaagg      4020
     acgagaattc aaagtgaaag taaaagatac atactcggac aactttttga tgagagcagg      4080
     agttccacag ggaagtgtgc ttggaccgtt gctgtattca ctgtatacgg cagatatacc      4140
     tatcccgaac agccaacata tggtagctcc ctctaaagca cttattgcga cctatgcaga      4200
     tgacattgca gtcatttaca actacagatg tcacagagaa gcttccaatg gattacagga      4260
     gtacctattc actcttgcag cttggtgcaa aagatggaac ctgaagatta atccgcagaa      4320
     aacaacgaac gtctgcttta cactgaaaag gctcataatt aatacccctc aaatccaact      4380
     tgagggagtt accctagaac agcaaaacga agcaaaatat cttggtatta ctctggacaa      4440
     gcgacttact ttcgggccac atctgaagtc aacaactaaa aaatgtaata tgagggttca      4500
     gcagctgcgt tggatgataa gcaaaagaag caccatgccg cttaggtgca aaagggcagt      4560
     atatgttcat tgcatcctgc caatgtggct ttatggtgta caaatttggg ggatcgcagc      4620
     caaatcgaac tataagcgca tccaggtgtt gcagaaccga atgctgagaa ccataacagg      4680
     ctgtccctgg tacgtgcgcg gctccactct tcatagagac cttaacgtac atactgtgga      4740
     agaacagata aatagacaca caagccgtta cagcgacaga cttctaagac atcgcagcct      4800
     actggctaga aatttacttc cagctagacc attgaggcgt cttaaacgtc taggttttgc      4860
     taagacactt aattagaaca taaatcagac attagaaatc catatatatg tattatattt      4920
     tggttaggct tacattgtat atacacttca tgtgatgtta aggtacttat ttgatgtaca      4980
     gattcttcac ttaataaata taaaacaaaa aa                                    5012
//
ID   Jockey-13_DBp repbase;    DNA;    INV; 3345 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3345
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 720-720 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..449
FT                 /product="Jockey-13_DBp_1p"
FT                 /translation="PTVSCENPSNNKCANCKGNHPSTDKTCPCRLSYLNLI
FT                 SKRSAKRIRKTNIEPENPIRSNRDSLLNPELRSQRSSTNNNIGFSQHTFGS
FT                 YRDALKGKATLPNATETGLFTPEEVNSLLIDLINNLSTCSNKGEQFQVISN
FT                 LAIKYVYSNK"
FT   CDS           563..3088
FT                 /product="Jockey-13_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="VKHGLLKPTDLTYQIYTVYRRDRKENRGGGVAIVVSN
FT                 KIEHEQITNLKTHLIENVGIKIKTAPNNNNLKLYAIYFPGYTAKCLTASCN
FT                 VAGDRNRLKTQYRSDLLKISKLQGNFIACGDYNSCHRTWNCDRANCWGNIL
FT                 NEISDLGKFXVLFPFHPTYIPRCHKAKASTIDLCITKTPNQVSNPTVLQNL
FT                 SSDHLPIILKYSINFLQNEKHQPIISKANWTKFKEFINDRLLDIGISKYKS
FT                 CCSISDIDFLVNSFTNIVNDGFREAVPHKRQTFTNYKIPHHIRELFKIRNT
FT                 IQRQWIRSRQPILKARCDHLNYVIQQKLFAHNNTEWNSKLQQIGKCSKPFW
FT                 KITKALKKRKQFIPCLCLGDSSYETGTEKANVLADIFEQKHKLTTSFSNPE
FT                 TVNLVQYSIQSIANYDINTSQVLKTTNSEISSIIKALVTRKSPGDDGISNI
FT                 CLKNLPVYAISFLVQIFNHCFSVGYFPNAWKTAKIIPIVKPGKLASRPDSY
FT                 RPISLLCSISKIFEKITKARIVSYLDTHEILPSIQYGFRTKLNCTVPSVKL
FT                 TNYIKENMQNKKSVGLVTLDIEAAFDTVWHDGLVHKLKNMELPXYLIKIVH
FT                 SFITQRSFYISLNGEKSTQRSILAGVPQGSVLGPVLFIIYTHDIPQMTNCK
FT                 LSLFADDAAIYTSGVLYNDIKYIIQNYLYKLEEYYHKWKIKINPNKTQAIF
FT                 FTKRRKSCYLPNDCLELCNTPIEWVNNIRYLGIHFDKKLTFSTHVGVTIDK
FT                 INQTIRILYPIINRKSKLSIENKLIIFKVIFRPALMYGHSIWGKCAQTHIK
FT                 KIQTCQNKLLKLLLNLPYYTSTKYVHEMSGVQTVQQYISQ"
XX
SQ   Sequence 3345 BP; 1284 A; 615 C; 487 G; 955 T; 4 other;
     accctacggt ttcttgtgag aacccaagta acaataaatg tgccaactgt aagggcaatc        60
     atccatccac tgataagacc tgcccatgcc gtttgtctta tctcaatttg atctccaagc       120
     gttcggcgaa gcgcataaga aaaaccaata ttgaaccaga aaatccaata cggagtaatc       180
     gcgattctct cttaaatcca gaacttcgaa gtcagcgctc ttcaacaaat aataatatag       240
     gattctctca acacaccttc ggcagttata gagatgcgct caaaggcaag gcaactttac       300
     caaatgcaac tgaaactggc ctctttacgc cagaagaagt aaactcttta ttaatagact       360
     taataaataa tctcagcaca tgctccaata aaggagaaca attccaagtt atatcaaatt       420
     tagccattaa atatgtgtat tcaaacaagt aactctcctg atactttaaa tattatggcg       480
     tggaacgccc gctctataaa gcataagcgt gtagaattta ttaagttttt acaagataat       540
     aatattcatg tagctacaat aagtgaaaca tggcttactc aaaccgacag atttaacata       600
     ccaaatctat actgtgtata gacgagacag aaaagaaaat agaggtggcg gggttgccat       660
     tgtcgttagc aataaaatag aacacgagca aattaccaat ttaaaaacgc acctaattga       720
     aaatgtggga attaaaatca aaacagcccc taacaataac aatctaaaac tttatgccat       780
     atactttcct ggttacacag caaaatgtct gactgcttca tgtaatgtag ctggagaccg       840
     aaatcgctta aagacacaat atagatcaga cttactaaaa atttccaaat tgcaggggaa       900
     ttttatcgcc tgtggtgatt ataactcatg tcatagaaca tggaactgcg acagagcaaa       960
     ttgctggggt aacattttaa atgaaatatc agatttaggc aaatttawcg tgctttttcc      1020
     cttccatcca acttatattc ctagatgtca taaggctaag gcatccacaa tagatctttg      1080
     cattaccaaa actccaaatc aagtttcaaa tccaacagtc ttacagaacc tatcctctga      1140
     tcatttgcct ataatcttaa aatattcaat aaatttctta caaaatgaga aacaccaacc      1200
     gataattagt aaagcaaact ggactaagtt taaggaattt atcaatgaca gattgctaga      1260
     tataggaata agtaaatata aatcttgttg ttcgatctca gacattgact tcctggtcaa      1320
     ctcgttcaca aatattgtca acgatggttt tcgtgaagca gttccccata aaagacaaac      1380
     atttacaaat tacaagatac ctcatcatat acgcgagtta tttaaaatta gaaacacaat      1440
     tcaaagacaa tggattaggt caagacagcc gatacttaaa gctagatgtg atcatcttaa      1500
     ctatgttatt caacaaaagt tatttgctca taataacaca gagtggaaca gtaaacttca      1560
     acagatagga aaatgtagta agcccttttg gaagataaca aaagctttaa aaaagagaaa      1620
     acaatttata ccctgtctct gccttggcga ctcaagctat gagactggaa ctgaaaaagc      1680
     aaacgtactc gcagacattt ttgaacagaa acataaatta accacttcct tctcaaatcc      1740
     agaaactgtt aacctagttc aatattccat tcagtcaatt gcaaattatg atattaatac      1800
     ctctcaagta ttaaaaacta caaactctga aatttccagc ataatcaaag cactagtaac      1860
     acgtaaatca cctggagatg atggtatttc aaatatctgc ttaaaaaacc tccctgttta      1920
     tgccattagc tttctagtac aaatctttaa tcattgtttt tccgttggat attttccaaa      1980
     tgcatggaaa acagccaaaa taataccgat tgttaaacca ggcaaactag ccagcagacc      2040
     tgatagttac agaccgatta gcttattatg tagcatatcc aaaatatttg aaaaaataac      2100
     caaagctcga atagttagtt atttagatac acacgaaata ctgccttcca tacaatacgg      2160
     attcaggacc aaactaaact gcacagttcc ttccgtaaaa ctcacaaatt acataaaaga      2220
     aaatatgcaa aataaaaaat ctgttggact ggttacctta gatattgaag cggcttttga      2280
     cacagtwtgg cacgatggct tggtgcacaa gttaaagaat atggaattgc ccmcatacct      2340
     tataaaaatt gtacatagtt ttataacaca aagaagtttt tatatatcct taaatggaga      2400
     aaagtccact caacgctcta tactagctgg ggtacctcag ggatcggtgt taggaccagt      2460
     gttgtttatt atatacacgc acgacattcc ccagatgaca aattgtaagt tatcattatt      2520
     tgctgatgat gcagctattt acacttccgg cgtattatac aatgatataa aatacatcat      2580
     tcaaaattat ctctacaaac tagaagaata ttaccacaaa tggaagataa aaattaatcc      2640
     taataagaca caagccattt ttttcacgaa acgaagaaaa tcttgttatt taccaaatga      2700
     ttgtctagaa ctatgcaaca caccaattga gtgggttaac aatattcgct atttaggaat      2760
     acattttgat aaaaaactca cttttagtac acatgttggg gtcacaatag ataaaataaa      2820
     ccaaacaata cgaatattat accctataat caatagaaaa tctaaattat caattgaaaa      2880
     caagttaatc atttttaagg taatattcag gccagccttg atgtatggac actccatttg      2940
     gggaaaatgt gcacaaacac atattaaaaa aatacaaacg tgccaaaata aacttctaaa      3000
     gctattactt aatctaccat attacacaag cactaaatac gtgcatgaaa tgtctggagt      3060
     ccaaacggta caacaatata tttcacaata aactctctta gtcagtaaaa gtagtataat      3120
     tagtaawtaa gtgtcagatc aaggttttta atccaatttt tccttgaaat aattatatgt      3180
     tataaataac caaacgaata aaatattata atatatttca gttgaaaagc atatgctata      3240
     actctgtaaa aataaaattt gtaacattag ctttaatgaa atttataaat ttttaggaaa      3300
     taaagcacac agaataaata aataaataaa taataattaa ataaa                      3345
//
ID   Jockey-13_DEl repbase;    DNA;    INV; 4154 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4154
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4595-4595 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 4154 BP; 1511 A; 810 C; 738 G; 1089 T; 6 other;
     atgtcaaggc attggaaggc aasttaactt gggattgccg ctggaacact cattgagtat        60
     agacgtgcct aattactgtg cgaagcccac gcttctttca tttattttca ttctgagtac       120
     cgttggagct tatcagcatc ttctatacaa caacaatcat cgaacgttgg agtcacatag       180
     tgttgatacc ctatcaacat gaacgacacc aacgaagacg aagacgtatc ggtttgggac       240
     tggcagaagg taaaaccgaa gcaaaataaa cgaccgaatc caaactcccc acctgttgct       300
     aggaaagtaa ctgcattgga tgttggacca agcaccagct caaataagtt tcatcttcta       360
     agcactgata agccagctga tcatggaaaa gacaacgaaa acgaaacaca aggaatggaa       420
     actgcaagca acgattcgga caaaccaccg ccaatattcc watctgatgt tgctaatata       480
     actcaaatgc tgtcatgtct mggtaaaaaa aattgataag cwacamtttt actgcaaaag       540
     tcaacgcgat ggacatgttc gagtaatggt taaaactgtg gaagagtata gaaaactaat       600
     taaaactcta agtgatgatc tagttaagtt ccatacctat caacttaaac aagagaaagc       660
     ctttagagta gttattaaaa atcttcactt ttcaacagat actggactga ttaaaaacga       720
     agtcgaatct aagggacaca aggtcagaaa cataagtaac atcaaaagcc gagtcacaaa       780
     ggagccatta aatctattct ttcttgacat tgagcccgac aaaaacaacg aggacatata       840
     tgatctgaaa catattgaaa atgctatagt caacatcgag ccagctcgca aaattaatga       900
     tatagtgcaa tgttatcgct gtcaacaata tggacacact aaagcttact gctcaaaaaa       960
     ctacaagtgc gttaaatgct ctcttgaaca tccaagcatc tgctgcccga aagataaaga      1020
     ttctccagcg aaatgtgcaa actgcgatga aaatcatgct gcaagttaca aagggtgccg      1080
     tatttaccaa gaagtcatgt ccaaaaagac aacaggtcgc aaacaaaata tgaacgcaga      1140
     caataaaact gaaacaacca acaattatgc tccaccgaat gcagcgccgt tcaaaaaatc      1200
     taacgaatac caaacatatg ctgaagtgac atcagataat actaacgcaa acaattcatt      1260
     aggaagaata gaacacctat tggagaaaca gtttgaactt acgaataatt tgcttaatat      1320
     gattatgtta cttgtaaaca aattatgcaa ataaatctta atatcggaat atggaatgcc      1380
     aatgggcttt ccaaccatgt aaacgaaata tctatgtttt taaaaacaaa tgaaatacac      1440
     gtcatgctca tatctgaaac tcattttacc accaaatctt actgtcggat aatcggatat      1500
     gatttaataa gagccgacca ccctgcgaac agagctcatg gaggctctgc cattctcgtt      1560
     aaaaatggaa taaaattttc aattatggac agtgtcaggg aagactccat acaagcagct      1620
     gttatagaga taaaatgtgt gcatgcagat gtgatagtat ctgctatcta tctgcctcct      1680
     cgatattcac tcaaagaagg gatttcaata acttttttca gagacttggg ccgagattca      1740
     ttgtaggagg tgattttaac gccaaacatc cttggtgggg ctccagacta actaacccta      1800
     aaggaagcga gctttataaa tgcatacgag ccaataaatt tgtaagcctt tcaactggaa      1860
     aaccaacata ctggcccacc gatagccgca aaattcctga cttgatggat tttatagttt      1920
     tttctggaat tccacaatca cacatgaatg ttatcgaaaa ttttgactta agctctgatc      1980
     attctcctat aatagccaca tattgcgctg tagcttgtat gcataaaaac catataaaat      2040
     aatctcatca actacaaaca tcaatacgtt taaaaaccat cttgaatcaa atgtaagttc      2100
     caacttgtct ttaaaaacag gagacgaaat agattctgca gtagagtatt taacagccgc      2160
     aatacataca gcgagttata tatcctctgc tcctgcaact tactgccaac aaattagacc      2220
     accatttata gcaactgaaa tccggtcaat gatacagaat aaacggaatt tgcgaaaacg      2280
     atggcaggaa agcagatatc ccgctgacaa gagactgtat aacaaggcaa catcagatat      2340
     gttatcagac ttaaagaacg aatctcttac cacttttctt aaaagtctag atcctcaatc      2400
     atcaaactat gaacatatcc tgtggagagc aacaaaatat ctcaaaagac cggctaagag      2460
     aagcacagtt gttaagaaca ataatggaga gtggtgtaga tcggatgaca aattgctgaa      2520
     gcttttgcgc accacttgca ctctgtattt cagccaaata atattgtaaa cgaaactgtc      2580
     gagagagata tagagagatt tttagtttct ccgtgccaaa tgagcttacc aattcgtcgt      2640
     atacaaacga aggaagtttt aatggaaatt aagaacttaa aaaacaaaaa agcgcccggc      2700
     ccggacaaaa ttgatggact aactataaaa aacttaccac caaaatgcat tcgtttatta      2760
     actcttatat ttaatgcgat catgaggcta gaccattttc ctactcagtg gaaatatgct      2820
     gaggtggtga tgattttaaa gccaaagaaa cctgaaactg agttatcgtc gtaccgtccc      2880
     ataagcttac tgtcaacatt ttctaaggta tttgaaaaaa tactcttgaa gagaatgttg      2940
     cctattttgg acgaactcac catcattccc gaataccagt ttggtttcag gagaggacat      3000
     ggaaccccag agcagtgcca tagagttata catgaaatta taacagcatt tgagtgtaaa      3060
     gaatactgca ctgctgcatt tcttgacgtt cagcaagcgt ttgatagagt atggcatata      3120
     ggcttactat ataaaataaa aaaaatggct gcctgcacca tactatttgc tgctaaaatc      3180
     gtatctcgat aaacgctgct tctacgttca tcaaaaagag gagtcttctt caatagtaaa      3240
     cataaatgct ggcgtcccac aaggtagcgt cctaggtcct gttttatata cgctatttac      3300
     tgctgacatg ccaattgcaa ataatgtaag agttgcaacc tacgcagacg acacagccat      3360
     catagcaaat agctctctaa gggaagaagc atctgaatat ctacaacacg agctcgacct      3420
     tattgaagag tggtttcagc gatggaaaat aaaagtaaat ccgcttaagt ctgtacaggt      3480
     aacatttgca ttaagagctg gaaactgccc agaagtgaga ttcaataact cacctattcc      3540
     gcaaagtgac tcagttaaat atcttggcat gcactttgat cgcaggctta catggaagaa      3600
     ccacataaag gcaaagagac aacaactaac tataaaagct aacaaaatga cctggttact      3660
     gggtcgaaat tctcaagtsa gcatagaaaa caaaatactg ctatataaag cgattctcaa      3720
     gcctgtctgg acgtatggta tacaactatg gggaacagcc agcaactcaa acatagagat      3780
     cctccagcgc ttccaatcta acatgttaag aagaattgtt aacgctcctt tttatgtgac      3840
     aaatgcaaat atccataatg acttgaaaat cccatttgtg aaagatgaaa ttagaaaaca      3900
     cagtatagca tacgtaaaca aattacaaag ccatgaaaat actctagcaa ttaatcttgc      3960
     agataacagc ttagaaatta gaaggcttaa aagaaaacat gttctcgatc tccagtattt      4020
     gtaaaacttt aaatagtatg taatataata gtaagcttta ttgaaagctt tctattactg      4080
     taattgttat tgttataaaa tttgcttatt gtctacgata gacagattgt aaataaaatc      4140
     gttaaaaaaa aaaa                                                        4154
//
ID   Jockey-13_DTa repbase;    DNA;    INV; 3254 BP.
XX
AC   .
XX
DT   28-AUG-2021 (Rel. 26.11, Created)
DT   28-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3254
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (28-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental sample sequence. Both termini are truncated.
XX
SQ   Sequence 3254 BP; 1213 A; 733 C; 622 G; 686 T; 0 other;
     cttctggaac gcctgcggga taagaaataa gacaggagaa ctagaggcat ttataaccag        60
     agaaaaaatt caaataatgc tagtaactga aacacgtcta catccaaact caaaggccct       120
     aaatttcccc ggctatcaca catatcatgc acgcaatcca ctctcacaca ggaaaggggg       180
     cacagcgaca attgtcgctc aaaatttaaa acattctgcc ctggacccag tggaaatgga       240
     gtccatccag agctccccca ttgtcctgat cccgaccagc ggaataagag cagaaatggt       300
     tgtaattggc ccaatatact gtcagccaac atataactgg gaaacagaac atttttctag       360
     actgttcaaa catcttgaag ggatattagg gggaagaacc aagtttatca tcagcggcga       420
     ttggaacgca aaacactcca gctggggaaa ccttcgatcc tgcgccagag gaagatcctt       480
     gttccaagcc ctccaacaaa atagggccct acaaattctc gccactgggg gagctacaca       540
     ttttcctttc tgcaaaaaaa atcaaccctc ggccattgac ttctccattt ataaaggatt       600
     catagagcat cagctcaaaa taaaatcgac ggatgacctg agctccgacc acttgccact       660
     gcaaattgac ataaatctcg gcaatgattg tttctcgcaa aacgaatact gccaaaataa       720
     aattatacag aaaagaacaa atctgactag gtttaaggaa attctaggag aaaaggtcct       780
     attaaacaca gaaataaatt ccggacaaga catagaggac tgcctggaca ttttccttag       840
     aaacataaag gaggcagcca aggaatcaac tccggaaagc aatcctcgaa actcaggcac       900
     acgcataaga aaacaacacc tagtaaaact ggatgaagaa acacacaggc tactcaatga       960
     aaaaaaagag ttaaataaag tcttcagaca aacggggact gaagaggcga agaagtggtt      1020
     taaggctgcc caaaacaggc tggcaaaggc aataaagaaa ctcaaggaga acaatataaa      1080
     tcgcatggta gaagggatag actcaacaga cagatacaga atgaaaaaac tatggaaaat      1140
     gacaaactgc atcaaaaagc aaccccaacc ctgctggtca attaaaaagg aggatgatcc      1200
     aaaccacccc actgttggta gcccttggac gaaaactctc gaagagaaag ctgaagtctt      1260
     cgcatcccat ctggaatccc gtttcctgcc aaaccatcta aacgagacct ctgataggga      1320
     aaaaaccaga cgggaactgg aacaaaataa agccattaac gatatgatga ttaggtcaaa      1380
     taaattcttt aagcccagac ctgtgagtct agctgaactc aacctacaca ttgacgcact      1440
     gataccggga aaagcgcctg gaaatgatat gatagacaac agattaatca aaattctacc      1500
     agacaaagct aaaatctatt taatccttat attcaacaac attcttcgta ctggtcattt      1560
     cccaggacag tggaaacacg ccgtgattac catgatactc aaaccaggaa aaaccccaac      1620
     agcagttaaa tcctaccgcc caataagcct actctctggc ttttcaaaac tctttgaaag      1680
     gatcttcatg acaagattat tcgacgtcga atccttttca aaagccatcc cccaccacca      1740
     gtttggattt aggaaacaac acggagctga acaccagcta gctagagtaa cacaatttgt      1800
     tatgaaagcg tttgaacaaa aagaagtctg ctcagccatt tttgtggata ttacggaggc      1860
     attcgacaga gtctggcacg acggactaaa actcaagttg tccaaacttc ttcctataag      1920
     cttattcaga atcatcgaaa actatctcca caatagaaca tttacagtca aaataaacaa      1980
     cgacattctg tcaaaaactg gaagcataag tgcaggtgtc ccgcagggaa gcaacttggg      2040
     cccgatacta tacatgatat attcctcgga catgcccgaa ttcatcccca caaattatgt      2100
     ccctagaaaa tcgtggcccg attactactc caaaaattcc atactagcca cctatgctga      2160
     tgacacagtg atcctcagca gcgcaaagac agctaaggaa gccataaatc aaaaccaaag      2220
     atttgtaaat ttgtactgca actgggcaaa aaaatgggac attgccataa atggcaataa      2280
     aaccggccat gtcttgtttt ccttaaaagg aaaacaagaa aacttgcaca caccccccct      2340
     agtggatggg actgtagcag ccaaactgtc taagcagatg tatctaggag ttatgctaga      2400
     tagtaaatta actttagtct cacatataaa gatgctcaga ggcaaaatat tctcagccta      2460
     taacaaatta gaatggttaa tcggcagcaa tagcaaactc cccaactcca caaaaatgct      2520
     cctcttcaag caaataatct cccctatctg gagctattct atagcaatct ggggagcatt      2580
     ggtctccgat acaagtataa acaaaaccca aactgtagaa aacaaattga taagaaaatc      2640
     cattaacgtt cccagatata caactcaatc tatagtcaga gggaactaca acataaaatc      2700
     ggtgctggaa gtctatgaac aggctagcca gcgatttgta aactccgtca cagctcacag      2760
     caacccccta atcaaggacc taataaactc catttacata ccagagaggc ttgcggccag      2820
     tagaaacaga ctccttgaac aataccgaaa atacatccaa ccaataaaag tgagtctccc      2880
     taaaccaaaa aaagaaccaa cctatgaaca cataagagac tatactgaga gagaggagag      2940
     agagatagtt aaaaagataa ggcataaata tagagaaacc ctacccacac ttctccgact      3000
     agaagatgaa aagaaagaaa aagaggaaga taggatatat gaaaaggaaa gaatggaaag      3060
     aattatggca aggagaggga aaaaaaccag cagaatgagt gaatggcgca taaacgattg      3120
     caacaaaatg tataggcaag ggaggttcaa cagagaggag atcttggaaa ggatggaggg      3180
     ccaaccgaga ggcgttatca ggattattct ccctgacttt caaacgcatt tgggggacaa      3240
     taccatcttc tatt                                                        3254
//
ID   Jockey-14_AAe repbase;    DNA;    INV; 4378 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-14_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4378
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1380-1380 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..1464
FT                 /product="Jockey-14_AAe_1p"
FT                 /translation="MDTTDQQNATCSSISYGYNIATSNQFGTLAGSDTNVL
FT                 PITQNKNAKKGKEKIPLVTITETNIPAVQGMALNAGVSMFNVKRTSTGVNV
FT                 FMYTTQDHSKLVSYLKQQKANFFTYVRDEDRMTKIVLTGLPDMNVEEVSEA
FT                 LKEVDVSPKEIRKMTLKRKRNEDHALYLLYFNKGSVQLNAIRKIKTVGHCI
FT                 VRWDFYSTKTKGPVQCRNCQMYGHGSAQCFRRPRCVKCGNDHKTIDCPLTA
FT                 NREDKSIKLPKEQLACANCGQQHTANFHLCEKRQEFINARNHQLLKSKTQR
FT                 SSREGFQFRPEEFPPSGPLGGSFQKPFRQHAQLYSNVVSHREDRTVPPQFR
FT                 QHHNPRYSSNQSTKNDLFSPEEIVDIVSDVFSRLSTCTTKQQQIKVIFEIT
FT                 AQYCFPCNG"
FT   CDS           1460..4135
FT                 /product="Jockey-14_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDNNTRNITVSYWNANGVQSKSHDLFRFLINNSIDVV
FT                 LICETFLKPAIKLVHSDYKIYRLDRSGRRKGGVAIIVRSNVAHTLLPSFDL
FT                 EIVEAIGIEVVTSTGPISLVSAYNPGANRDNELFLQDIQKLTKIRNSFFIC
FT                 GDLNARHRLWNCIRANTAGNLLFNELQSGTFIVQHPPLSTYIPTDPNRRCS
FT                 TLDLVLTNGIHSILNIRTVQDLTSDHLPVLFEIDSATANLAHPRSIPDYSR
FT                 ANWRGFKSFLNDNIDLQQLNLSTIHETYQIDNHIEYFTTIMHQAHERFIPL
FT                 IVPDRYKLILPDDILRLIRLRNSRRRQWQRNRRDPYLKSVYDYVCTLVKKR
FT                 IDEFRNKSWSDNLLSMNYDRNNHNKMWKFGKLFKNKHNFIPALXKDGKLLI
FT                 TDKEKCEEIGNNFARAHLTTFHDQSPIEFEVNSSVDNFLANHEQVDLDTRR
FT                 LVKPKEILHFLKKLKNNKSPGFDQINNRCLKRLPRKALVLLTFIFNSCIKL
FT                 NYFPLAWKHAKVIAIPKPNKDHSDPRNYRPISLLSSLSKIFEKVLLNRLNQ
FT                 HISENNIISETQFGFRTEHSTVHQLHRLTRNIKNNREIKKSTGLVLLDNEK
FT                 AFDTVWHKGLIFKMINLNFPTYLVKLIHSYISDRDFVVTIGSETSQLQTVP
FT                 AGVPQGSVLSPVLYNVYAHDIPDFGGCVRYQFADDVAITSSSSDPVEVIIN
FT                 LNASLVQYSNYCKKWKIKVNENKTEAVFFTRFRSPRKLPNRCLNLNGFDIP
FT                 WKDEAKYLGLILDKKLTFQKHSQYILERCEKLIRIMYPFINRKSKLNTRNK
FT                 ILLYKTVFRSTLAYASPVWSECAMSHRKKLQVFQNKCLKMVHNLPPWFSTS
FT                 ELHDISHIETLDQYCNRIRSNYYQKCESSSFDMLRALCN"
XX
SQ   Sequence 4378 BP; 1409 A; 914 C; 786 G; 1268 T; 1 other;
     tttgaaaccc gctctcgttg tgatcggacg tgttattcat cgcgctttat tctcgatcta        60
     ttattcaaat agtcttttgt tttcgtgatc tcctatcgtt gttgcagcat cgatctagca       120
     ccggcggccg ctggtcaaaa acggaatagt tccacagtaa tatcaaacgg cgtggagcca       180
     aatggcccga cccagaaact tcgtcgcccc ttaacggatt tcccgagcac atctgccctg       240
     attgagcttc cgatcatgga tacaacagat caacaaaacg ccacgtgctc ttctatcagc       300
     tacggttaca acatcgccac atcaaatcag tttggcactc tagctggcag tgataccaac       360
     gtgctgccta tcacgcaaaa taaaaatgcc aaaaaaggaa aagaaaagat tccgctggtc       420
     acgattactg agaccaacat ccctgctgta caaggaatgg ccttgaacgc aggcgtctcg       480
     atgttcaacg tcaagcgaac atcaactggg gtcaatgtgt tcatgtacac aacccaagac       540
     cactccaagc tcgtttccta cctgaaacag caaaaagcaa acttcttcac ttacgtgcga       600
     gatgaagaca gaatgactaa aattgtcttg actgggcttc cagacatgaa tgtcgaagag       660
     gtatccgaag cactcaagga agtggatgtg tctccaaaag aaatccgaaa aatgacgctc       720
     aagagaaaac ggaacgaaga tcatgctttg tacctcctgt atttcaacaa aggaagcgtg       780
     cagctcaacg ccattaggaa aatcaagacg gttggccatt gcatcgttag gtgggacttt       840
     tattccacaa agacaaaagg acccgttcag tgccgcaatt gtcaaatgta cggacatgga       900
     tctgcacaat gtttccgccg gccacgttgt gtcaaatgtg gaaatgatca caagactatt       960
     gattgcccgc taacggcaaa ccgtgaggat aagtccatta agcttccaaa agaacagctt      1020
     gcatgtgcga attgtggtca gcaacatacc gctaactttc acctttgtga gaaacgtcaa      1080
     gagttcatca acgccaggaa tcatcaactt ctcaagtcca aaacccagag atctagccgt      1140
     gaagggttcc agtttcgtcc agaagaattc cccccatccg ggccactggg agggtcgttc      1200
     cagaaaccgt ttcgtcaaca tgctcagctg tattccaacg ttgtgtccca tcgtgaagat      1260
     cgaaccgttc caccccagtt ccgccaacat cataatcccc ggtatagcag taaccagtcc      1320
     acaaaaaacg atcttttctc cccagaagaa atcgtcgaca ttgtgtctga tgttttctca      1380
     aggttaagta cttgtacgac caagcaacaa cagatcaaag tgatttttga aattacagct      1440
     cagtactgtt tcccgtgtaa tggataataa taccagaaac atcacagttt catactggaa      1500
     tgctaatggt gttcagagca aatcgcatga ccttttccga ttcctcatta ataattcgat      1560
     tgatgttgtt ctcatctgcg aaacttttct caaaccagct atcaaacttg ttcattctga      1620
     ttacaaaatt taccgcttag acagatctgg ccgtcgtaaa ggcggagttg caataatcgt      1680
     tcgttctaat gttgcgcata cattgctgcc ttctttcgac cttgaaattg tcgaggcaat      1740
     aggtattgag gttgtcacat ctacgggtcc aatttcgtta gtttctgctt acaatcctgg      1800
     cgctaacaga gataatgagc tttttctgca agatattcaa aagctcacta aaattcgaaa      1860
     cagcttcttc atttgtggag atctaaacgc ccgccaccgt ctgtggaact gcattcgtgc      1920
     taacactgca ggcaatttgc ttttcaatga actgcaatct ggtactttta ttgtacaaca      1980
     tcctccatta tctacgtata ttcccactga tccaaaccgt cgatgctcta ctcttgattt      2040
     agtgcttaca aatggtatac attcaatatt aaacatacga actgttcaag atctaacatc      2100
     tgaccattta ccagtgctat ttgaaattga ttccgctacg gcaaacttag cccatcctcg      2160
     atccattcca gactattccc gtgccaactg gagaggattt aaatctttcc taaatgataa      2220
     cattgatcta caacaactta atttgagtac aattcacgaa acctatcaaa ttgacaacca      2280
     tattgaatat tttaccacta ttatgcacca agctcatgaa agatttattc cgctaattgt      2340
     tccagacagg tacaagctta ttttacctga tgatattctt cgtttgataa gattaagaaa      2400
     tagtcgccgg agacaatggc aacgaaatcg aagagatcca taccttaaat ccgtctatga      2460
     ctatgtatgt actttagtca aaaaacgtat cgacgagttc aggaacaaat catggtcaga      2520
     taatttgctg agcatgaatt acgatcgaaa taatcacaac aaaatgtgga aatttggtaa      2580
     acttttcaaa aacaaacata atttcatacc agcacttama aaagacggta aattattgat      2640
     taccgataaa gaaaaatgtg aagaaattgg aaataacttt gccagagcac atctcactac      2700
     ctttcatgat caaagtccca tcgaattcga agttaattca tcagttgata attttcttgc      2760
     aaaccacgaa caagttgatc ttgatactcg gaggctagtc aaaccgaagg aaatattaca      2820
     ctttctaaaa aagttgaaaa acaacaaatc tccaggcttt gaccaaataa ataatcggtg      2880
     tttgaaaaga ttaccgagaa aagctctcgt gcttttgaca tttattttca attcgtgcat      2940
     aaaactgaat tacttcccct tggcatggaa acatgctaag gttatagcaa ttccgaagcc      3000
     aaataaagac cattctgacc cgcgaaacta ccgtcctatt agtctattga gcagtttaag      3060
     taaaatcttc gagaaagttt tactaaaccg actcaatcaa catatctcag aaaacaatat      3120
     aatttcagaa actcagttcg gattcaggac tgagcattct acagttcacc aattgcatcg      3180
     actaactagg aatataaaaa acaaccgcga aatcaagaag tctactggac tagttctgtt      3240
     agacaatgaa aaagcattcg atacggtttg gcacaaaggt ttgattttca aaatgatcaa      3300
     tttgaatttc cctacttatc tggtaaaatt aattcattcc tacatatcag atcgtgactt      3360
     tgtagtaacg ataggttccg aaacctctca gttacaaacc gttcctgctg gtgtccctca      3420
     agggagcgtt ttatctcccg tgttgtataa cgtctacgca catgatattc cagattttgg      3480
     aggatgtgta cgatatcaat ttgctgatga tgtagccata acatcgtcat ctagcgatcc      3540
     agttgaggtg attatcaatc tcaatgcgag tctagtccag tattccaatt attgcaaaaa      3600
     atggaaaatt aaggtcaatg aaaataaaac cgaagctgtt ttctttacaa ggttcagaag      3660
     tccaagaaaa cttcctaata gatgtctgaa tttgaatgga tttgatatac cgtggaaaga      3720
     tgaagcgaag tatctaggtt taattttaga taaaaaactt acgtttcaaa aacattctca      3780
     gtatatactt gagagatgtg agaaattgat tagaattatg tatcctttta ttaatcgaaa      3840
     atcaaaacta aatactcgaa ataagatttt gctgtacaaa actgtattta gatcaactct      3900
     agcctacgct tcgccagtat ggtccgagtg tgccatgtct cataggaaaa agctacaagt      3960
     ttttcaaaac aaatgtttaa aaatggttca taatttacct ccttggttta gcaccagcga      4020
     attacatgac attagtcata tagaaaccct agatcagtac tgcaatagaa ttagatcaaa      4080
     ctattatcag aaatgtgaaa gttcttcttt tgatatgttg cgtgctttat gtaattagtg      4140
     ttagggtcct agcttttaag ttttttaatt gtttcaagta agaggttttt tatctgaaaa      4200
     gattgttttc ctctaaatga aaaatcaata tgatataaca tcatcactat attgtaaaga      4260
     tacttaaaaa atcgatctaa tgttgaaagt tgctaacgaa ctcattattt gtagaataag      4320
     gaatttattg tataatactc ttttatgatg aataaactgt tgattgattg attgattg        4378
//
ID   Jockey-14_DAn repbase;    DNA;    INV; 3465 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-14_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3465
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 395-395 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Fragment. Only 5 copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2648
FT                 /product="Jockey-14_DAn_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="QDIDDAIEIFNRNIYHAAKIATRHIKTSNRNPTGQFL
FT                 LDRKLLNLQAIKKYTKQIKMARQTPEAAKNYKAANERFLRAIKEAKTKRTN
FT                 NILNKIDPLDRYRMQKLWKITNHFKRQPEPNWPLKLYTGDGTSAKDWYSWT
FT                 KSSEEKTEAFTRHLEERFSPKLTNSESFRAHVISKKEEICTQKLLMTTPCW
FT                 MHRENYGHNSDKTNLPFLPITPNEVLAEVKLLQNKKAPGPDQIDNKLIKLL
FT                 PHKATLHLTHIYNCMLRYSYFPKQWKRAAITMIKKPGKTPHEVSSYRPISL
FT                 LPGFSKIFETLLMHRMFKIQDFERAIPSHQFGFRKQHSTEQQLLRVTQHIL
FT                 SAYEQKMYCSAVFIDVSEAFDRVWHDGLLLKLAKLLPHSLYKILQSYLTDR
FT                 SFTMNSTNGIPSRTGKISAGVPQGSVLGPILYTVFTSDMPLPEVISSQHTY
FT                 NPSYFENMMLSTYADDTIILCTKREPQLAIQTTESFLKYITDWATSWCITL
FT                 NPNKTIHVLFTKRSVANLTGNKSPKMKGILIKNEPKHRYLGLILDRKLLLH
FT                 HHINQLQNRIRNVAAGLNWIIGTKSKLSPQSKILLYKQIIAPIWQYALPLW
FT                 GALTSNTQFQRIEAAQSKLIRKILKAGRYTRNQVLRDAYNIKSINEIYSEA
FT                 SNRLATSLASHPNTEARKILMDPVTPNRLEMPRYLDQLNRFFLPLRQQLQQ
FT                 QNQLNTHQPALPTLISYEQQLLSQQASIKARQQDEEREQNKRLKIEQDPHY
FT                 RPSIGWVNAMSYKLRHGITTRWEMADKIKYEPEYIQRLIMSPLLPSEIPPP
FT                 TPDQELDARLSTLKTQIINDLDLNLNHETNLAEGDSRTRFLPNSSSPILQA
FT                 PQIPCINLVEDHPLGNPAIADIWKSTPEI"
XX
SQ   Sequence 3465 BP; 1208 A; 1091 C; 595 G; 571 T; 0 other;
     agcaagatat agacgatgca atagaaatct tcaaccgaaa catataccac gctgccaaaa        60
     ttgccacccg ccacattaaa acgtcaaacc gaaaccccac cgggcaattc ctgttagacc       120
     gaaaacttct aaacctacag gctattaaaa aatacacgaa acaaataaaa atggccagac       180
     aaacccctga agcggcaaaa aattacaaag ctgctaacga gcgtttcctt agagccatca       240
     aagaagctaa aacaaagagg acaaacaaca tactaaataa aatagacccc ctcgaccgct       300
     acagaatgca aaaactctgg aaaatcacga accactttaa acggcagccg gaaccaaact       360
     ggcccctaaa actctacaca ggggatggca ctagcgccaa ggactggtac tcatggacca       420
     aaagcagcga agaaaaaaca gaggccttta ccagacactt ggaagagcgt ttctctccca       480
     aacttactaa ttctgaatct tttagggcgc acgtcatctc caagaaggaa gaaatctgca       540
     cacaaaaatt attgatgacc acaccgtgct ggatgcatcg cgagaattac ggccacaact       600
     ctgataagac aaacctcccc ttcctaccca taacaccaaa cgaagtacta gcggaagtta       660
     aactactgca aaacaaaaag gccccaggac cggaccaaat agataacaaa ctaatcaagt       720
     tactcccaca caaagcaacg ctgcatctta ctcacatcta taactgcatg cttcgctaca       780
     gctacttccc caaacaatgg aaaagagccg ccatcacaat gatcaaaaaa ccgggaaaaa       840
     ccccccacga ggtatcgtcc taccgcccaa ttagcctcct accgggcttc tcaaaaatat       900
     tcgaaacgct actcatgcat agaatgttta aaattcagga ctttgaacgc gctattccct       960
     cacaccaatt tgggttcaga aagcaacaca gcacagaaca gcaactactc cgagtcaccc      1020
     aacacatcct ttccgcctac gaacaaaaaa tgtactgctc tgccgtattt atcgacgtga      1080
     gtgaagcatt cgacagagtt tggcacgatg gcctactcct caaacttgcc aaacttctcc      1140
     cccactcgct gtacaaaatc ctacagagct acctaactga cagatccttc accatgaaca      1200
     gcacaaacgg aattccatct agaactggga aaatcagcgc aggtgtcccc cagggaagcg      1260
     tcctgggacc catcttatat actgtcttca cctcagatat gcctttgcct gaagtcataa      1320
     gcagccagca cacctacaac cccagctact tcgaaaacat gatgctctcg acctacgcgg      1380
     acgataccat aatactatgt accaaaagag aaccacaact ggcaatacaa actactgaga      1440
     gcttcctaaa atacatcact gactgggcaa ctagctggtg cataacacta aaccccaaca      1500
     aaacaataca tgtactattc acaaaacgct ctgttgctaa cctgaccgga aataaatctc      1560
     caaaaatgaa gggcattcta ataaaaaacg aacctaaaca tcgatatctc ggactaatcc      1620
     tggacagaaa gctcctacta caccaccaca taaaccagct ccaaaaccgg atccgcaacg      1680
     tggctgctgg gctaaactgg atcattggaa ccaagagtaa actctcccca caaagcaaaa      1740
     tactgctcta taaacaaatt attgcaccga tttggcaata tgccctaccc ctatggggag      1800
     cacttacctc aaacacccag ttccaaagaa ttgaagccgc tcaaagcaaa ctcatccgga      1860
     aaatcctaaa agccggcaga tacaccagaa accaagtcct acgcgacgca tacaatatca      1920
     aaagtattaa cgaaatctac tccgaagcca gcaacagact tgcaacttcc ctagcctccc      1980
     acccaaacac ggaagcgagg aaaatcctca tggacccagt cactccaaac agactagaaa      2040
     tgccaagata cttggaccaa ctaaatcgct tctttctacc actgcgccaa caactacagc      2100
     agcaaaacca gctaaacaca catcaacctg cgctcccaac attaatcagc tatgaacagc      2160
     aactactatc acaacaagcc agcatcaaag ccaggcaaca ggacgaagaa cgggaacaaa      2220
     ataaaaggtt aaaaatagaa caagacccac actacagacc ctcaataggc tgggtcaacg      2280
     ccatgtcata caaactccgg catggaatca ccacgcgctg ggagatggca gacaaaatta      2340
     agtacgaacc ggagtatata cagagactta ttatgtctcc cctcctacca agcgaaatac      2400
     caccacctac tccagaccaa gaattagatg ccagactgag caccctaaaa acgcaaatta      2460
     tcaacgacct ggatctaaac ctaaaccacg aaacaaactt ggcagaagga gacagcagaa      2520
     caaggtttct tccaaactca tcctcaccta ttctacaggc tcctcaaatc ccatgcataa      2580
     acttagtaga ggaccacccc ctcggaaacc cagccatcgc ggatatctgg aaatccaccc      2640
     cagaaatttg ataccacacc tgacctagtc tccattacta cctcacagat ggccataact      2700
     acagaacctg acgccatgac acagcaacgc cccgccaata gccgtgcagc aacagcccac      2760
     taatacgacg cacagacgcc cgatccagcc gccactgctc cgattacaaa aacaagcgac      2820
     tgcgtccagg cagaaacccc gctacgcagc aacggcacat caacacgacg ctcagccacc      2880
     cggaccagcc gtcaccactc tggccaccag accaaacccc cgacgacgcc cagcagaaac      2940
     tccgccgcgc agcatcgcct catcagtatg acgcacaacc acctgcatca gccgtcacta      3000
     ctctggcctc cagaccaagc tacagcaacc aggcagcaaa cccgccacgc agcaacggct      3060
     tgccaacacg cacacatgat cctggaacag ccgctgccga cttggcctcc aaaaccaaca      3120
     acggcgtcca ggcagctaca tcgcagcgct gcagcaacgg ccagccaaca cgtcgcacaa      3180
     gaacctagaa aagcagccac cattctgacc accagaacca acaatggcat cgaggcaacc      3240
     accccgcaca aagcacaggc ccaccaacca ctgaagaaaa cacctgaaag cgccgccaat      3300
     ggattgacca ccaaactccc gacgacgccc agcagtaacc ccgccgcgca gcaacggctc      3360
     accaatacga cacactgata cctggaccaa ccgccactgc cctggccaac agaccaaacg      3420
     acggcatcca ggcagcaact ccgccacgca gcaaaggctt gtcaa                      3465
//
ID   Jockey-14_DBp repbase;    DNA;    INV; 4642 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-14_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4642
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 721-721 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The consensus is ~95% identical to
CC   that of Jockey-8_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           216..1832
FT                 /product="Jockey-14_DBp_1p"
FT                 /translation="MSSLSNDQKNERRSSVNQRNGFYSYFSTRDTEVEKSA
FT                 IKSNPALLTAETQRARSCSPALLTPTPASWSSQCKTPPPISETNFAPTTSS
FT                 ATISAITATTTATQSTATSTTTASTKTTTSESAKAATATQTGMDRYIQIKR
FT                 KLSPQSNPAGNKTKINRVLNIDKEPDRSTTNRFALLAEVEENQPAQDTAKK
FT                 PKPPPIYIREKSSSALVNKIASLIGNGDNFHVVPLIKGNIHETKVQTKTEE
FT                 HFRIVSKYLDTVQKNYYTYQLKSSKGLQVVVKGIEPDVTAAEIKTALKEKG
FT                 FAAKNVINILNKDKKPQPLFKVELEPESRSLKKNEVHPIYNLQYLLHRKIT
FT                 VEEPHKRNGPVQCTNCQEYGHTRSYCTLRAVCVVCGDAHKSACCTTNKDST
FT                 VKKCGNCGGSHTANYRGCMVYKELKSRMRQATATRNQNPQNAYIASKTTPD
FT                 VFFAKAARSSFGPLNTTNGFSYADALRSGREIPIQPNSQSAQQAPEQPHSK
FT                 TETMMLTLQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK"
FT   CDS           1839..4520
FT                 /product="Jockey-14_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQALRISMWNANGVSRHKLELSQFLTENHIDVMLLVE
FT                 THLTSKYNFHIRGYTIYRTDHPDGKAHGGTGVLIRERIKHHFHKRFATNFL
FT                 QATSIQIQSSNGILSIAAVYCPPRFSISEGQFMDFYNSLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNAIINVKNKLDYVSPGSPTYWPTDSRKLPDLID
FT                 FAVTKNIPRNLISAKAVSDLSSDHSPVLLTLLQSPEITEHPFSLTTPKTNW
FT                 LKYKKYVSAHIELAPEFNMESDIDYTTSALEEVLVAAAKISTPHGKDVDRN
FT                 KYFKSNQQIEQLVREKRRTRRDWQNSRSPASKQRLKEATRSLDQALHQQEE
FT                 NAQLRYIQNLSPTSTKYPLWRAHPNLSAPIETTTPIRNSSGCWARSDEDRA
FT                 ETFATHLQSVFQPNPASNSFLLPEIQPESSPQPAAPSFRPNEIEKVIRGLK
FT                 PKKAPGGDLLTPKMLIELPKCAIEVVCKLFNGIINLGYFPKKWKKSIIIMI
FT                 PKPGKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPHLEACNIIPAHQFGF
FT                 RRNHGTIEQVNRLTSEIRSAFEQREYCSAIFLDVSQAFDRVWLIGLMHKIK
FT                 TYLPTYTHKLLESYLYNRVFSVRCNAATSGDYTIEAGVPQGSALGPCLYVL
FT                 YTADIPTSAQLTTSTFADDTAILSRSRCPTQATTQLANHLTIVERWLSDWR
FT                 IKINEQKCKHITFTLNRQTCPPLLLNGMQIPQANEVTYLGVHLDRRLTWRK
FT                 HIECKKMHLKLKASSLHWIINSRSPLCLDYKLLLYNSVLKPIWTYGSQLWG
FT                 NASSSNIDIIQRAQSKILRTITGAPWYVRNENIHRDLGILAVKDEIQKQKE
FT                 SYKEKLSSHPNFLARGLTRVSSVSRLRRNDLPTQQSIFRAV"
XX
SQ   Sequence 4642 BP; 1549 A; 1224 C; 915 G; 953 T; 1 other;
     ggtatacgaa ctaccgaact gagcggacgt gctttgtccg agctccggga aaactgcacc        60
     ataatacagc taatcaaaaa aactggggta acccaatata agcgaaaaga cgctgaacta       120
     caatttacta aaagcgacag acaagctttt tataacagtt gtgatgtgct aaaccaaaac       180
     tagtgcattg ttaaaaaaaa agtaagwgcc acgcaatgag ctcattgagc aacgatcaaa       240
     agaacgagcg tagaagttca gtgaaccaaa gaaacggctt ctactcttac ttttcaaccc       300
     gcgataccga agtggaaaaa tcggcgatta agagcaaccc ggctttactg accgctgaaa       360
     cccaaagggc acggtcttgc tcacccgctc tgctcactcc gactcccgcg tcatggagtt       420
     cgcagtgtaa aaccccccct ccaatatcgg aaacaaattt cgcaccaaca actagcagtg       480
     ctacaatttc tgcaatcaca gcgacaacca ctgcaactca aagtaccgcg acgtcaacga       540
     ctacagcgag tacaaaaaca acaacctcgg aaagtgccaa agcggcaacg gccacacaga       600
     ctggaatgga tcgctacatc caaattaagc gcaagcttag cccgcagagt aatccggcag       660
     gcaacaaaac aaaaattaac cgtgtcctga atatcgataa agaaccagac agatccacta       720
     ctaacagatt tgccctactg gcggaggttg aggaaaacca accagcccaa gacaccgcaa       780
     aaaaacccaa gccccctcca atctatatta gggaaaaaag ctcgagtgcc ctggtcaaca       840
     aaattgcgtc gttgatcggg aacggtgaca actttcatgt tgttccgctt atcaaaggga       900
     acatccatga aacaaaggtg caaaccaaga ctgaagagca cttccgaatc gtgtccaaat       960
     atctggacac tgtacagaaa aactattaca cgtaccagct gaaaagcagt aagggcctac      1020
     aagtggtagt aaagggaata gaacctgatg ttaccgccgc ggaaataaaa accgccctta      1080
     aagaaaaggg cttcgccgcc aagaatgtta ttaacattct aaataaagat aaaaagccac      1140
     aacccctctt caaggtcgag ctcgagccag aaagcaggtc gctgaagaag aacgaagtcc      1200
     acccaatcta caacctgcaa tatcttttgc atcggaaaat cactgttgaa gagccacata      1260
     aacgcaacgg tccagtgcaa tgcactaact gtcaagagta tggacacaca aggtcttact      1320
     gcacacttcg ggctgtctgt gtagtctgcg gggacgccca caagtccgct tgctgcacta      1380
     caaacaagga cagtaccgtg aagaaatgtg gaaactgcgg aggcagccat acggcaaact      1440
     atagaggatg tatggtgtat aaggagttaa agagtcgcat gcgtcaagcg accgcaacgc      1500
     gcaaccaaaa tccacagaat gcgtacattg cgtcaaaaac tacgccagac gtcttcttcg      1560
     ccaaagctgc gagatcctca ttcggtccac taaacaccac caacggcttc tcctatgccg      1620
     atgctctacg atctggaagg gaaattccaa ttcagcctaa ctctcaaagc gctcaacagg      1680
     ccccagaaca gccacacagc aaaacggaaa ctatgatgct taccctccaa caaagtatga      1740
     tggagcttat gtcattcatg aaaacgacca tgcaaacgct tgttcaaaac cagaacatgg      1800
     tgatacagct gctcgtagca caacagtcta aataatctat gcaggcgcta cgaatatcaa      1860
     tgtggaacgc caatggtgtc tcacggcata aactagaatt gtcacaattc ttgaccgaaa      1920
     accatattga cgttatgcta ctggtggaaa cgcatcttac aagcaaatac aactttcata      1980
     taagaggcta cacaatctac cgcacagatc atccagatgg gaaagcccac ggcggaactg      2040
     gagttctaat cagagaacgc attaaacacc actttcacaa aaggtttgca acaaacttct      2100
     tgcaggccac atcgatacaa attcagtcaa gcaacggaat cctttcaatc gctgccgttt      2160
     actgccctcc tcgtttctca atctcggaag gacaatttat ggacttctac aattcacttg      2220
     gggatcgatt tatagccgca ggagactaca acgccaaaca tacgcactgg ggatcacgtc      2280
     tagtgactcc caaaggaaga caattgtaca atgcaattat aaatgtgaaa aataaactgg      2340
     actacgtttc ccctggaagt cccacatact ggccaacaga ctcacgaaag ctcccagacc      2400
     ttattgattt tgcagtgaca aaaaacatac ctcgcaatct aataagtgcc aaagcagtct      2460
     cggacttatc atcagaccac tcgcctgtgc ttctaacgct tcttcaaagc ccagaaataa      2520
     ccgaacaccc cttcagcctg acgacgccaa aaacgaactg gctaaaatac aaaaagtacg      2580
     tgagtgccca catagaactc gccccggaat ttaacatgga atcggacatc gactacacta      2640
     cgagcgccct ggaagaagta ctcgttgcgg cagctaaaat ctctactcct catgggaaag      2700
     atgtagaccg aaacaaatac ttcaaatcta atcagcaaat cgaacagctc gtgcgagaaa      2760
     agaggcgcac gcgtcgtgat tggcaaaaca gcagatcacc agcttcaaaa caacgcctta      2820
     aggaagcaac ccgatcactc gaccaggctc ttcaccaaca ggaagaaaat gcacagctga      2880
     ggtacatcca gaatctctcg ccaacaagca caaagtaccc cctgtggagg gcccacccaa      2940
     atcttagcgc cccaattgaa acgaccaccc cgataagaaa ctcttcggga tgctgggctc      3000
     gcagcgacga agaccgagct gaaacattcg ccacacatct ccaaagtgtc ttccagccaa      3060
     acccagcctc aaattcattc ctcctgccag aaattcagcc agagtcctcc cctcagccag      3120
     ccgcaccttc attccggccg aacgaaatcg aaaaagtcat aagagggcta aaaccaaaaa      3180
     aggctcccgg tggtgaccta ttgaccccaa agatgctgat cgaacttcca aaatgcgcta      3240
     tagaggtcgt ctgcaaacta tttaatggaa tcattaatct tggctatttc ccaaaaaagt      3300
     ggaagaaatc catcattata atgataccga agcctggaaa agaccacaca attccgtcat      3360
     catacagacc aataagcctt ctatcttgtt tgtctaaatt gtttgaaaaa tgcttgttaa      3420
     ctcgcataat accacatctg gaagcttgca atattatccc ggcacaccaa tttggctttc      3480
     gaagaaacca tggaaccatc gaacaagtga acagattaac atccgaaata cgctcagcct      3540
     tcgaacagcg agaatactgc agcgctattt tcctcgacgt atctcaagct ttcgaccgag      3600
     tttggctcat cggactcatg cacaaaatta aaacgtattt gccaacatac acccacaagc      3660
     tactggaatc atacctctac aatagggtat tctcagtgag atgcaacgca gctacttcgg      3720
     gcgactacac catcgaagct ggagttccac aaggaagcgc actcggcccg tgtctatatg      3780
     ttttgtatac tgcggatatt cctacgagcg cacaactaac aacctcaacg ttcgccgacg      3840
     ataccgctat ccttagtcgc tccagatgcc caacgcaggc aacaacccaa ctggctaatc      3900
     atctcacaat agtggaaagg tggctgtccg actggcgcat taaaataaac gaacaaaagt      3960
     gtaaacatat aacgtttact cttaatagac aaacatgccc tccgctttta ctaaacggta      4020
     tgcagatccc tcaagctaac gaagtaacgt accttggcgt tcaccttgat agacgactta      4080
     cctggcgcaa gcacatcgaa tgcaaaaaga tgcacctaaa actgaaagcc agcagcctcc      4140
     actggatcat aaactcacga tcgccactgt gcctggacta caagttacta ctgtacaatt      4200
     cagtcctaaa gccaatctgg acgtatggct cccagctgtg ggggaacgcg agcagcagca      4260
     acatagacat catacagcgc gcacaatcaa aaatcttgag aactatcaca ggggcacctt      4320
     ggtatgttcg caacgaaaac atccaccggg atctgggcat cctcgcagtg aaagacgaaa      4380
     tccagaagca aaaagagtca tacaaagaaa aactgtcttc gcacccaaat tttctcgctc      4440
     ggggattgac tcgggtttct agcgtatccc gccttagacg caacgacctc ccaacccagc      4500
     aatcgatttt tagggccgtc taactccgta tcagtcaata tgactgttag ttaagttaaa      4560
     aatataagat ttgatacacc tcttgttagt ctcgcaaaga gaagattcaa gaaataaaag      4620
     caacgttaaa aaaaaaaaaa aa                                               4642
//
ID   Jockey-14_DEl repbase;    DNA;    INV; 3296 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-14_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3296
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4596-4596 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 3296 BP; 1054 A; 757 C; 664 G; 795 T; 26 other;
     ataaagcctg wttgtgggaa ttgtgccggw gatcatccta ccaactctaa atcctgssag        60
     tcgcatatta acaaccaatg katgtgtgca aactgcggtg aaaatcacct gctggtttta       120
     aaggctgcaa agtaagaatg gaattgcgca aaaaatwaaa acctgggtta aaactcagca       180
     amacaacaag caatagggca agcgaatccc gaaacggtca actwttctcc atgtcagcta       240
     ccagagatgg cgtctcttat gcagacatgg ccagaaatag ccttccgagc agtaccagcg       300
     ctgcagccag acagsctktg gcacatattc ctggagatga ccgcaactct gacagaaatc       360
     tgtccacctt ggaaagggca atctttgata taaatgctas gccggatcaa ctcttcaaac       420
     tagtcatgga aacgattgag tcgaacmagg cctttcgcga cctagttcag gttctaattt       480
     cagggaaatg acagtcgcaa cacttaagat cggactatgg aacgcaagag gtmtagttaa       540
     gaagagtgaa gaacttcgtc ttattgataa ctcaatagac attatgctgg tcttaaaatg       600
     tacctacctg gttatggcca ataccttgcc aatcacccta gtaacaccgc taaaggcggt       660
     tctcatcaag tctaacatta tcmacactca ggctgagccc acaacacgaa atgatttaca       720
     kctagctagt ctcgatcttc caacawatgg aggtgttctt aagatagctt cattgtacct       780
     tcckcccagc gagccctgga caaaaacsat ttcgaccagc ttatagcatc tctgggccct       840
     aaatttttgg mtggagggga ctttaatgcc ataaggtctc gttktcgggg gaagcgtctt       900
     caagaagcca caatttctag ctcaagccaa attctagcta ctggggaacc taccttttat       960
     tcttccaata tcagacttac gccaacagcc ctgaactttt ttattgtgaa tggagtacca      1020
     ctcaataagc tctcgatcga aacaaaatac gagctatcct ccgatcattt gtcagttgtt      1080
     gcaactctaa gtcaaacaca gcaatacaaa atcaaaagga aagcaatact accgcccggc      1140
     tcctcagttg aaaaatttaa ggaaaccata gacagaagct taaattcaac acagtgatta      1200
     accatccaga tgatctcgaa gaagcggtaa cggttttcac ggaaaaaata tacactgctg      1260
     cgacggctgc tagcccaaat caaagacatc ctacggacca aaataaaacc aacctgctcc      1320
     cacaaaatgc tttcgttctt atacagctaa aaaggaaagt tcgtcgcgag tatacaagaa      1380
     caggagataa gcgaatctac aacatttaca aaaggctttc aaatcgccta agtaaagtct      1440
     tgacaaagaa caaacaagac caaattgact gtatgttgga aaatgcgagt ccagatgcat      1500
     cggctaacta ctctctatgg aagctcacga atcggtttaa gagacagatc accccaaagg      1560
     ctcctatcag aaatcccgct ggtggttggt gtcgctccag tcagcagaag gctgatatct      1620
     ttgctgacag tttagagaac agatttaagc cgttaaacct aactccgata gaaaatcgaa      1680
     tgcttgtgca aatgcgtctg gacagacctt ttcaaatggc cctgcccaca aggcctgtaa      1740
     cactggaaga ggttgtgaca cagatcggaa agctcaaaaa caaaaaagct ccaggtgagg      1800
     atctcctgga caacaaaacg ctcaaaattc ttcccaaaaa agcactactt tttatagtcc      1860
     tgctgctcaa cagcgtctta aagctgagtc attatccaag tacatggaag agtgctatta      1920
     tcacaatgat tcccaagcca gaaagcaacc caccgaagta gacgcatacg gcaataagtc      1980
     tcttaccgca ttgggcaaaa tgatggaaag agtgatattg gatcggatcc ttggactaga      2040
     aagtgtgagc aaagctttcc aaaatttcag tttggtttcc gaaaaagtca cggtactcct      2100
     gaacagctac accgcgttgt caattttgct ctggaagcca tggaaaacaa aatgtatgca      2160
     gttgctgtgt tcatggacat tcaacaagcc tttgataggg tatgcacgac ggtctcctaa      2220
     gtaagctgaa gattatacta acgccacagc ttttcctcct cattcagagc tttttatcgg      2280
     aaaggaaatt cagtgtgact gtcgatggtg agaagtcgtc aaaacgtcca gtctcagccg      2340
     gtgtacccca aggcagtgta ctaggcccga cactttactc actctacacg tcagatatgc      2400
     cagattcctg gggctgtacc gaagttgacg atgataacat gctcatcgca acatacgccg      2460
     acgacactgc ggttatggtc aggagttcaa gtatagatat gcaaccttgg gcctgcagga      2520
     gtacgtgaca cgctttgaaa agtggactga gaatgaacat aggcatcaac tgcagcaaat      2580
     gtgcttgtgc caagcctcca caaggccaaa aaactgctca ggcatttcca tgctcggctc      2640
     tgtacttcga cacgagtcct actacaagta ccttggtgtg attttggata gaggactcac      2700
     tttccagagg cacacaacca tggtcaagca gtctgtgctt tcaaaggcag aagtatgtcc      2760
     tgggttctat ctccaagaaa taagctctca ctgtccaaca aagttcgcat ctataaagct      2820
     attcttagtc caatctggaa atatgcatta caaatctacg gcacagcgtc taagtcgaac      2880
     ctaagcaaaa tacgagtagc acaaagtaag attatcagat cgatttgtaa tgccccctgg      2940
     ttcatgagaa ctagtgatat agaaagagat ctccaaatcg caaagatagg cgatgtatgt      3000
     cgtacgcacg ccgaaaacta cctcagacgt cttggctctc atcctaacac cctggcgaag      3060
     aggctaatat ggagacctac gaaaagaaga cttaaaagwt accacccaca tgaccttcca      3120
     ttaagatata tttaacmcat tcgaagtctg aagawattaa gatgtaaats aagwagamtt      3180
     aatgtataat cttatatgcc aaaactttgt tatcccctat atttacaacc tgcccaagct      3240
     gccacatagg tagcagtata cccgttaatt ttgaataaat atacattaaa aaaaaa          3296
//
ID   Jockey-14_DTa repbase;    DNA;    INV; 3482 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3482
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. Both termini are indeterminate.
XX
SQ   Sequence 3482 BP; 1106 A; 833 C; 739 G; 804 T; 0 other;
     atattattat tgtacaatat atatttaacc acggtagcta atgtattgtc atcttattag        60
     tgaacggacg tgttttcgaa gtgctccaca gaacgcgtgt ttttcggtgt taaaagttga       120
     tttgaaaatc taaagcgtac aaacgtttgt gtgaagccct acgctgtgtg gtgattatgc       180
     gcgcaagtgc gtgcgacgcg aatttgagct ataattggaa taaatcttat ttgcaaaaag       240
     tgaaatactg gcaagtttta aagcccaaag tcatcccagt taaaaggagt ctccctcccg       300
     agtcaccgga gccagaaaga gctgccaaaa atataatcac agtaagcgag aaaggtaaat       360
     ctcctacccc caatttgagc agctcaaaca cctcgagcaa caatgataca taaccagaag       420
     aaggtgagat tctgcctttt atattcccaa agaagactgc caaaaagata attgaagaac       480
     aaccaatgta tgaagaaccc agcacctcaa atcgctttgc cacactgcct gtcgagagca       540
     gcaaccctaa taataacgaa gataaagagc agaagagtgc acccaaacca cccccaattt       600
     ttattccggg ggttaagagc atcgctgata tggtaaatga tctgcgtaaa attgtagagc       660
     ttctcgtata aagctacggg aggaggaaat atcagattgt tgcccaaaga tagtaaagga       720
     agaaagagca ttccgtatag tcgtaaaagg attacatttt tcaactccga caaccgagat       780
     tgtggaagcc atcgaaaaac tcgggcataa ggtgctccat gttaagtgta tcaagaaacc       840
     atagaacgct ttggccccat gccaaaggca ccagtattaa ctaggcatgc tccgcaggaa       900
     aatttcgctc ctaacgctgc tgcaaataag cctggaatct caaaattcag ctacgctcac       960
     gttacaaggg gagtatcctc acaatccttt ggcaataaat attccacaaa taatgccgaa      1020
     tcaaacttgg agcacagact cacgcggcgg atagaaatat tgatgaacac catgtttcaa      1080
     caattgcaaa atatgatgag ggccatgttt tcgagtcaga tgaacattaa ccaatgtcca      1140
     taaacacaca aattgtaatt tggaatgcga atggcttgac tcagaaaaag cctgaagtat      1200
     aacttttcat caaaacgatc atgtcagaga cccattttac cagcaggtcc catttttcta      1260
     tccctggcta tgatataatc catgcgaacc acccaggtga cagaatacgc ggtggtgcat      1320
     caattattgt aaagcgcgac attcaacacg aggagttaga gtccattcaa catgcgtgga      1380
     tgcaatgtgc gaggatcagc ttactcacgt cgacaggaaa catcaccgtc gctgcagcct      1440
     attacccccc cgctatacaa tagtccaccc aaacggtaca tcagagagcc cgcagagaca      1500
     actaccattg gtcgacggag ttggcttcca tggtaataga gaggagaaga ctgaggagag      1560
     tttggcaggt cagcagaagc cggagcgaca agactgcgtt gaacagggca agtaaggacc      1620
     tcaacttaat gatactaaac ctcaaaagta agtccctgga agcatacctg gtggacctcg      1680
     agccctgcag tgcagaacac aacctttggt acgctaccaa ataccttaag aggcctgtaa      1740
     gaaggatagc accagtaaaa acagctgctg gaatatggtg tcgatccagc caggaaaaag      1800
     ccaatgattt tgcagatcat ctaagcaata gtttccagac attcgacttg tgcgatctag      1860
     aagacttaga agagacaata acctttctag atgtaccctg ccccatggat atacctattc      1920
     ctgaaatagt caccgatgaa attcaggagg aaattaagaa cttaaagcct tcaaagtcgc      1980
     ccgggtacga ccgaattgat gccaccgcat taaaacacct tcctttaaac tgcattgata      2040
     atcttaaagt gatcatgaac caatgcctga gactcggtca cttcccatct caatggaaat      2100
     gcgccgaagt tatattcatc ccgaaaccag gcaagccgga ggctgaactg gcgtcttaca      2160
     ggccaataag tctcttggcc attttctcaa aaatcttgga gaaattattc cttaagatat      2220
     tgattcccat tctggaggac aaggacataa tcccagacca ccagttcggc ttccggcgag      2280
     gtcatgggac atttcagcaa tgccacagag tcgtctcctg catactagcc tcatttgaaa      2340
     gcaaaaggtt ttgtgctgct gctttctttg acatcaggca agcctttaac agagtctggc      2400
     accaaggcct cctctttaag ctcaagagta tcttgccgac ttcctatttc ctgatgttga      2460
     agggattctt agcaagcagg agattctatg tgaggtgcaa ccaagaggag tcgcctatta      2520
     aggaagtggc cgctggagtt ccccaaggca gcgttctaag ccctatcttg tattcaatat      2580
     atactgcgga catgcccaca acgacgggga atcacaacat gacgtgcaca tacgcagatg      2640
     acacggcttt cctggtctca gctgacaccc ttgccacagc accgcaaggc ctacaacaag      2700
     cgcttgacaa cttagagcca tggttgaaga ggtagaacgt cgtcataaat gctgagaaat      2760
     ctacacatac tacttttacg ctgaggccag gaatctcccc ggcggtctcc ataaacggcg      2820
     cacctatccc gcagcagacg acggccaaat atctgggttt gactctggat tccaaactga      2880
     catggaagga ccacatcgtc aataaagtca agctcctcct gcggaagaac cggcagatgt      2940
     ggtggttgct ccaacggaga agcaagctct cgattaaaaa caagcttctt ctgtacgagg      3000
     cgatattgaa acctgcatgg atgtacggga ttggggcact gccgcaagca ccaacatcaa      3060
     gaaactcgaa agggcaaact caaagggcgg caaattttca acgcgccctt ctatgtgagc      3120
     aactctacaa taaaacgaga cctgtaactg ccttttgtag tagaagaagt ggcgaaacat      3180
     agcaccaaac acctggacaa gatgcaaatt catgagaacc ctctagctac aagtgcactg      3240
     gaccaacagc ctcgtcgcct gagcagatgg cacccaacgg acctgccttt cagggtcccc      3300
     taaggcccag agttaaaaac gtcgatctta tcgcacatca ctcaacacac aacccccctt      3360
     ttactacact ccctgttaac acatctacac aaaatacaat taaacgaaca taatttgtta      3420
     tcccaccgtt aaatttcatg aaaacattta atataatgcc ccatgggcag atgtaaataa      3480
     aa                                                                     3482
//
ID   Jockey-15_AAe repbase;    DNA;    INV; 4541 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-15_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4541
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1381-1381 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           283..1629
FT                 /product="Jockey-15_AAe_1p"
FT                 /translation="MGNKKKKSVSQDATIDDTKGVKRLRHEEATPSGFNNR
FT                 LLATNPFVTLSANNGHPPAAQQQQNRPASQRQGNHRNLPQQQANQPPIPTK
FT                 ERVPPLFTTSKMVDGMKKDLAGDKIHPLFKHCLTGTKIICSSFADYNGVKH
FT                 YLGLKNLPFYTHDVPGTKPLKVIIHGLSKYTPAEIMEELKAANLKPVQVFP
FT                 INRAEGRQYRDLLYLVHLEKGSITMADLQKKRALFQTVVEWERYRPKKKDV
FT                 TQCANCLMFGHGARNCHMAPRCGKCTGPHLTSMCQPMEEAEPKCANCGANH
FT                 EANNRNCPKRAEFMEIRRKASSKNQRGREQRPSQSPQFNDEQFPPLRYQVP
FT                 NLPPLQPHRQPPRPPPSQPAPTGQRPSVQNRFAAAAAAPLVAPGWANYERR
FT                 PPTTDPLDDGTLFPTKMMSDFAVSLFGRLLSCRSKREQISAVCDTVQSFMD
FT                 KYGP"
FT   CDS           1622..4294
FT                 /product="Jockey-15_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDPEAIRILNWNACSIRNKTRELAAFLEDRQIDIAII
FT                 TETHLKPELSIYIPDFRTVRLDRTNSGGGGVAVVLRSNINCRLLPSFKTKI
FT                 IEAVGVEVESPVGPISIIAVYCPKDTRANDGSATNLRNDIIKLTRRQGQYV
FT                 IAGDLNAKHQVWGNSRRNNNGTIIQQDLEEGHYTIMGPDAPTRLSRTGVHA
FT                 TIDVFLTNMTDKISQPVAYQELSSDHFPVVAEVGLSVNRHQITRRNYHRVN
FT                 WDRFRRCVDDGIDYEERPVTKEDIDRQLCSIEEAISQAREQHVPAARQVSN
FT                 TLPIDELTKDLIRLRNTTRRQYQRTGLPSLKTDFNRMSKIIKARMVDLRNN
FT                 DFANKIRALPDCARPFWKMTKILKTKPRPIPPLIPLDNNGSMDRLITPDEK
FT                 AEELGRHFVSSHNLGQNVISPHEAAVNEHAANLHLTPNDFSEELEVTADEL
FT                 STYIRSFKNMKAPGFDKILNLELKHLSREFFEHLAEIFNQCLRLSYFPSAW
FT                 KSAKVIPIQKPGKDPSSPKSYRPISLLSALSKLFEKTIHSRLLSFTDQNNI
FT                 LLEEQFGFRRGRSTVNQLTRVTNILKRNKSVSKTSAMALLDIEKAFDNVWH
FT                 DGLVYKLHRFNFPSYLVKIIKDYLSSRAFSVYLNGAVRLETQRISAGVPQG
FT                 SILGPLLFNIFTSDMPPLPDNGTLSLFADDTAVVHKGRVIRALASKLQKSL
FT                 DVLAEYLHSWKICINAAKTQVILFPHSQSPRLVPPEDCKIIMAGTAVEWSD
FT                 TADYLGLTLDSKTNFRAQVDKTVTKCNILLKSLYPLINRKSTLSLKNKLAV
FT                 YKQIVLPVIEYGMPVWECCARKHHLKLQRVQNKFLRMILNTPPRMRTTEVH
FT                 RLADIKTLEDRFSEFKERYRARCQSSDQQVIRDLFPTL"
XX
SQ   Sequence 4541 BP; 1189 A; 1362 C; 1055 G; 934 T; 1 other;
     tcattcttgc ttcgatatcg gagctgtgcg gacaagattt atggtgctct gccttgtaat        60
     ccaaaagaag cgttttccga acaactctct tggacactac ctggcaacta agggttctcc       120
     atctatcctc tgaattcgca agtgcgttga tagttttcgc tcgagattcc gagcccgcgc       180
     cgcgtacttt cccccgcgct ctcccacctc ctccaggtgg caagagtaaa gtcaaaactg       240
     actaagctcg ccgcgagtgc atcgttgccc attgctgacg acatgggcaa caagaagaaa       300
     aagtcagtgt cccaggacgc gacgatcgac gacaccaagg gcgttaaacg cctacggcat       360
     gaagaagcca ccccatccgg cttcaacaat cgcctgctgg cgaccaaccc gttcgtcacg       420
     ctgagtgcga acaacggcca ccctccggct gcccagcaac aacaaaaccg ccctgcctcc       480
     cagcgtcaag gcaatcatcg caacctcccc cagcaacaag caaaccagcc gccgatcccc       540
     accaaggaga gagttccgcc gctgttcacg acatcgaaga tggtcgacgg catgaagaag       600
     gacctggccg gcgataagat ccacccgcta ttcaagcatt gcttgacggg tacaaaaatc       660
     atctgctcct cgttcgccga ctacaacggg gtcaaacact acctgggtct gaagaacctc       720
     cccttctaca ctcacgacgt ccccggaacg aaaccgttga aggtcatcat ccatggcctc       780
     tcaaagtaca cccccgctga gataatggag gagctcaagg cggcgaacct gaagccggtc       840
     caggtttttc ccatcaaccg cgcggagggt agacagtacc gggacctcct ctacctggta       900
     cacctggaga aaggctccat caccatggct gacctccaga agaaaagggc cctgttccag       960
     acggtagtgg aatgggaacg ctatcggccc aagaagaagg acgtcacgca gtgcgcaaac      1020
     tgcttgatgt tcggccacgg ggcaagaaat tgccacatgg ccccacgctg cgggaagtgc      1080
     accggtcccc atctgacatc gatgtgccag cccatggagg aggctgagcc aaagtgtgcc      1140
     aactgcggcg ccaatcacga ggccaacaat cgtaactgcc ccaagcgtgc ggagttcatg      1200
     gagatccgca ggaaagcgtc ctccaaaaac cagcgggggc gtgaacagcg tccctcccag      1260
     tcaccacagt tcaacgacga gcaattccca ccgctgcggt accaggtgcc gaacctcccg      1320
     ccactccaac cgcaccgaca accacctcga ccaccaccga gccagccagc tcccactgga      1380
     caacgccctt cggtccaaaa ccgtttcgcg gccgccgccg cagccccgct ggttgcccca      1440
     gggtgggcca actatgagcg ccgccctcca accaccgacc cgctggacga cgggaccctc      1500
     ttcccgacga agatgatgtc ggacttcgcc gtcagcctct tcggtcggct tctttcgtgc      1560
     cgttccaagc gcgaacaaat cagcgccgtg tgtgacacgg tccaaagctt catggacaag      1620
     tatggaccct gaagccatcc gcatcctgaa ctggaatgct tgttccatcc ggaacaaaac      1680
     aagggagttg gctgccttcc ttgaagaccg ccagattgac atcgccatca tcaccgagac      1740
     ccacctcaaa ccggaactca gcatttacat ccccgacttc cggaccgtga ggctcgaccg      1800
     gactaactct gggggagggg gcgttgcggt tgtcctccgc tctaacatca actgtcgcct      1860
     gctgccgagc ttcaagacga agatcatcga agctgttgga gtcgaggtgg aatctccagt      1920
     cggaccaatc agcatcatag cagtctactg tcccaaggat acccgcgcca acgacggttc      1980
     ggccacgaac ttacgaaatg atatcatcaa gctcactcgg cggcaggggc agtacgtcat      2040
     cgctggtgat ctcaacgcca agcatcaagt ctgggggaac tctcggcgaa acaacaacgg      2100
     gactatcatc cagcaagatc tcgaagaagg ccactacacc atcatgggcc cggatgctcc      2160
     cacccggttg agccgaaccg gggtccacgc aaccatcgac gtcttcctca ccaacatgac      2220
     ggacaaaatc tcccagccgg ttgcctacca ggagcttagc tcggaccact ttcccgtggt      2280
     ggccgaagta gggctctcgg tcaatcggca tcaaatcacg cgacgcaact accaccgggt      2340
     taactgggac cggttccggc ggtgcgtgga cgatggcatc gactacgagg agcgccctgt      2400
     gacgaaagag gatattgacc gccagctgtg ctccatcgag gaggcgatct cccaggcccg      2460
     ggagcaacat gtaccagcgg cccgtcaggt gagcaatacc cttcctatcg atgaactcac      2520
     taaagatttg atccgtttac gtaacaccac tcgacggcag taccaacgca ctggcctgcc      2580
     gtcgttgaaa accgacttca accgaatgtc taaaatcatc aaggccagaa tggtggacct      2640
     caggaacaat gattttgcta ataaaatccg cgctctccca gactgtgcac ggccgttctg      2700
     gaagatgacg aaaattttga aaaccaaacc cagacccatt ccaccgctga ttccattaga      2760
     caacaatggc tctatggatc gcttgataac tcctgacgag aaggctgaag agttaggtcg      2820
     gcacttcgtc agctcacaca atctgggaca aaacgtcatc agtccccacg aagctgctgt      2880
     caacgagcat gctgccaatc tgcatctgac ccccaatgac ttttcggagg agttggaggt      2940
     caccgctgac gaattgtcga cctatattag gtcmtttaaa aacatgaagg ccccaggctt      3000
     tgacaaaatc cttaatttgg agcttaaaca cctgagccgc gagttctttg aacatctcgc      3060
     ggaaatcttc aatcaatgtc tccggcttag ctacttcccc tccgcctgga agtcagcgaa      3120
     agtcatccca attcagaagc ctgggaagga tccttcctcc cccaaaagct atcgtcccat      3180
     cagccttctc tcagcgttat caaagttgtt tgagaaaacg atccacagtc gactcctatc      3240
     ttttaccgac caaaacaaca tcttgctcga ggaacagttt ggattccgac gcggtcggtc      3300
     caccgtgaac caactgactc gagttaccaa catcctcaag cggaacaagt ctgtctccaa      3360
     aacatccgcc atggcactgc tagacattga aaaagccttt gacaatgtct ggcacgatgg      3420
     cctggtgtac aagctacacc gatttaattt tcccagctac ctcgtgaaga tcatcaaaga      3480
     ttatctctcg tcacgggcgt ttagcgtgta tctgaacggt gcggtacggc ttgagacgca      3540
     aagaatctcc gctggcgtcc cccagggaag tatattaggt ccacttctgt tcaacatctt      3600
     cacctcggac atgcccccgc tccctgataa cggaactctg tcgttgttcg ccgatgatac      3660
     cgcagtcgtc cacaaaggta gggtcatacg tgcgctcgcc tccaaactgc agaaaagcct      3720
     agacgtccta gcagagtacc ttcacagctg gaaaatttgc atcaacgcgg cgaagaccca      3780
     ggtcatcctc ttcccccatt cccaatcccc gagacttgtt ccgcctgagg attgtaaaat      3840
     catcatggcc ggtacagcgg tggagtggtc tgacactgct gactatcttg gcttgaccct      3900
     agacagcaaa acgaacttca gagcacaggt cgacaagacg gtcaccaaat gcaacatcct      3960
     gctaaaatca ctttaccctt tgatcaaccg aaagtcgacc ctgtctctga agaacaagct      4020
     tgctgtctac aagcaaattg tccttcccgt cattgaatac ggcatgccag tctgggagtg      4080
     ttgcgccaga aaacaccatc tgaagctcca acgagttcag aacaaatttc tcaggatgat      4140
     cctgaacact cccccgcgga tgcgcaccac tgaggtccat cgtctggccg acataaaaac      4200
     actcgaagat cgctttagtg agttcaaaga gaggtatagg gcacgttgcc agtcatctga      4260
     ccagcaggtc attagggacc tgtttcccac actttaggtt atcaaatttt ttcttgttta      4320
     gtcttgtata tagtagctag gttatcaaat ttttctttta aaactaccag agcctataag      4380
     gccaaattaa ttaccagggt aaaaccgaac taataactaa gtaacaaaat aaatgtatgt      4440
     atatcaaagc tgaaggacct cacgaggtcg acctcttaaa atgtaaaaca attttcttgt      4500
     aaaacataat gtaaataaac acgaatttaa tttgaaaaaa a                          4541
//
ID   Jockey-15_DBp repbase;    DNA;    INV; 3396 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-15_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3396
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 722-722 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. The consensus is ~81% identical to
CC   that of Jockey-13_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..547
FT                 /product="Jockey-15_DBp_1p"
FT                 /translation="SYKGCQRYQDFLRRSMGPPKKQTTRQPQEKREQHQST
FT                 VSQQQLTKQMPNNFATNSRGLSYASIVRNGNGPAQRRLHDLQAHQQLQNSN
FT                 KNAVQQQHVLDVQSILEQQQQQFLKWQQQLQQQQQQQFFLWLQQQQQEQQQ
FT                 QNKKNSQRLERLENMVFEMANSIKQWMGDKSVPQRHNNVSASQ"
FT   CDS           547..3267
FT                 /product="Jockey-15_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNNLRILIWNVNGISGKAREVELFAHNNRIDIILLSE
FT                 IRLNRGEVVKXYGYSFYPAYKPSRHNHGVGGSAVLVRSSLSHFPQSVIETQ
FT                 NIQMSSIKVATGMGFMDVRAIYCPPRHRIEERHFTDILASCGQRYLIGGDW
FT                 NARHWMWGDTYNSPRGRELVESISARVAKILATGSPTRYPYVSGHTATCID
FT                 FALYHGILDSQINISQSWDLDSDHIALVVNLLTNGVNISPSPRLVTKRTDL
FT                 TAFKQHLESSFQLNSTLSSKEDIGNAVEVXTENIHRAATASTPPDPDHRTI
FT                 SYGIVPTREARELIKRKRRLRRRAIRSQDPVDRNLWNRAAQQLRTLLSELR
FT                 SDFFEHKLSSMDYTIDTNYSLWKCTKSLKRQPFRQVPIRCPDGEFAKNELE
FT                 QANAFGQHLEDRFTPYDFATIEQVQETHQSLETPLQMSXPIXPIRIEEISE
FT                 VIESLPXXKAPGIDRICNTTLKALPTRAILYIALIXNAIIRIQVFPKQWKX
FT                 AAIQMIHKPGKPEIDPESYRPIXLLPSLSKVWEKLIANRITVIISQSSILP
FT                 DHQFGFRGGHGTVEQVHRLVKHILQAFDALEYSNAVFIDMQQAFDKVWHDG
FT                 LLCKIKNLLPAPFYGXFKSYLEKREFKVKVRNTYSNNYLMRAGVXXGSVLG
FT                 PLLYSLYTADIPSPNNQHMIAPSKAXIATYADDIAVIYNSSCRHEAANGLQ
FT                 LYLESLVAWCKRWNLKINPLKTTNTCFTLKRKIMNTPQIQLEGVTLEQPLQ
FT                 AKYLGITLDKRLTFGPHLKATARKCKLRTQQLRWLINRKSKLPLRCKRAVY
FT                 AHCILPIWLYGIQIWGIAAKSNYKRIQVLQNRILRSITDCPWYVRGTTLHK
FT                 DLKLHTVEDQIGRHTSRYSERLLRHRSLLARNLLPARPLRRLKRQGFAKTI
FT                 RSQ"
XX
SQ   Sequence 3396 BP; 1077 A; 768 C; 679 G; 848 T; 24 other;
     aagctacaag ggttgccaga ggtatcaaga tttccttaga cgatctatgg gtcccccaaa        60
     gaaacaaaca acacgtcaac cacaagaaaa acgtgagcaa catcagtcaa cagtcagtca       120
     acagcaactc actaagcaaa tgcctaacaa ttttgcaacc aatagcaggg gtttatccta       180
     tgcctcaata gtcagaaatg gaaatggacc tgcccaacgt cgtctacatg acctccaagc       240
     gcaccaacaa ttacagaact cgaataaaaa tgctgtacaa caacaacatg ttctcgacgt       300
     ccagtcaata ttagagcaac agcagcagca atttttaaaa tggcaacaac agctccagca       360
     acagcagcag cagcaattct ttttgtggct acagcagcag cagcaggaac aacagcaaca       420
     aaacaagaag aacagccaac gacttgaacg gctcgaaaat atggttttcg aaatggccaa       480
     ctcaatcaaa caatggatgg gggataaatc agttccccag cgccacaaca acgtttcagc       540
     ctcacaatga acaatcttag gatccttatc tggaatgtca atggcatttc cggtaaagcc       600
     agagaagttg aactctttgc acacaacaac cgtattgata ttatactctt aagtgagata       660
     aggcttaatc gaggagaagt agtcaaawta tatggatatt ccttctatcc agcgtataaa       720
     ccatcacggc ataatcatgg cgttggagga tcggcggtac tggtgagaag ctctctcagt       780
     catttcccac aaagtgttat wgaaacacaa aacatacaaa tgtcttccat taaagttgcc       840
     acaggcatgg gatttatgga tgtaagagca atatactgtc ctccaaggca cagaatcgaa       900
     gaamggcatt tcactgacat actcgcttcc tgtggtcaga ggtatctgat tggtggtgat       960
     tggaatgctc gacattggat gtggggcgac acttacaatt cacccagagg acgtgagcta      1020
     gtcgaatcta tctcagctag agtggctaaa attcttgcca ctggttcacc aactagatac      1080
     ccatatgtat caggtcacac agctacttgc attgattttg cattatacca tgggatacta      1140
     gattctcaaa taaatatcag ccaaagctgg gatttagact ctgatcacat tgccctagtt      1200
     gttaatttgc taacaaatgg tgttaatatc agcccaagcc ctaggttggt cacaaaacgc      1260
     actgatctca ccgctttcaa acaacacctt gaaagctcct ttcaacttaa ttcgactcta      1320
     agctckaaag aggacattgg gaacgccgtc gaagttckaa cagaaaatat acatmgagct      1380
     gctactgctt caacgccacc tgatcctgat catcgtacta taagttatgg cattgtacct      1440
     acaagggaag ccagagagtt gatcaaaaga aaaagacgac ttcggagaag agcgattcgt      1500
     tctcaagatc cagtggaccg aaatttatgg aatcgagcag cacaacaatt acgaaccctc      1560
     ctaagcgaac ttcgcagcga tttcttcgag cataaattgt cctccatgga ctacaccatt      1620
     gacacgaact actctttatg gaaatgcaca aaatcgctga aacgacaacc ttttagacag      1680
     gttcccatcc gatgtcctga tggcgaattt gcaaaaaacg aattggaaca agccaatgct      1740
     ttcggtcaac acttagagga tcgcttcact ccttatgatt ttgctacaat agaacaagtt      1800
     caagagaccc atcagagttt ggagactcca ttgcagatgt cawtgcctat twaacctata      1860
     aggattgagg agatatctga agtcatcgaa tckttgccca amwataaagc tccgggtatt      1920
     gataggattt gtaacactac gttgaaggcc ttacctacaa gagctatcct atacatagca      1980
     ttaatttkta atgccattat taggatccaa gtktttccaa agcagtggaa gtwagctgca      2040
     attcagatga ttcacaagcc cggtaagccg gagattgatc ckgagtcata tcgtccaatc      2100
     agwctcttac cctccctgtc taaagtttgg gaaaagctaa ttgccaatcg aatcactgtg      2160
     attattagtc aaagcagtat cttaccagat catcaatttg gctttcgagg aggacatggc      2220
     acagttgaac aagttcacag attggtgaaa catatcctgc aggcctttga cgccctggag      2280
     tactccaacg cagtctttat cgatatgcaa caagctttcg ataaggtatg gcatgatggc      2340
     ctactatgta aaattaaaaa cctactacct gccccgttct atggantttt caaatcatat      2400
     ttggaaaaac gagagtttaa ggttaaagtt aggaatacat attcgaataa ctacctwatg      2460
     agagcaggag ttncgcwggg cagcgtactc ggaccgttgc tctattcntt gtatactgct      2520
     gatataccca gccccaacaa tcaacatatg atagctccct ccaaagctnt tattgcgacc      2580
     tatgcagatg acattgcwgt catctacaac tccagytgtc gccatgaagc agctaatggg      2640
     ctgcaactct atctcgaatc tcttgtagct tggtgcaaac ggtggaattt gaagatcaat      2700
     ccgctgaaaa caacaaacac ctgcttcacg ctgaagcgga aaataatgaa cacgcctcaa      2760
     atccaactag agggagtcac tctggagcag cctttacaag cgaaatacct tggcattacc      2820
     ctggataagc gccttacctt tgggccacat cttaaagcca cggctagaaa atgtaagctg      2880
     aggacccagc aactgcgttg gcttataaat agaaagagca aattgccgct tagatgcaaa      2940
     agagcggtat atgcgcactg tatcctgccg atttggcttt atggaataca gatttggggg      3000
     atcgcagcca aatccaatta caaacgaatc caggtgttgc agaaccggat actaagaagt      3060
     ataacagact gcccctggta tgtgcgcggg accactcttc acaaagattt gaagctacat      3120
     actgtagaag accagattgg taggcacaca agccgatata gtgaaagact tttaagacac      3180
     cgtagcctac ttgctagaaa cctacttcca gctagacctt tgagacgcct taaacgacaa      3240
     ggctttgcca aaacaattag gagccaataa ggctgccata ccccatgatg taatcctcat      3300
     atttgtattg aggtttggtt tatttttcat tttctatcca tgtgttgtta aggtacattt      3360
     tttgctgtac gggttcttca cttaataaat aaaaaa                                3396
//
ID   Jockey-15_DEl repbase;    DNA;    INV; 3941 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome: a
DE   sample fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-15_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3941
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (29-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental, single-copied sequence. Termini are indeterminate.
XX
SQ   Sequence 3941 BP; 1307 A; 872 C; 801 G; 961 T; 0 other;
     cgttggtgct tctcgcgcag atcctgctgg cattgctggc gctgctcgtt cgactcaagc        60
     tgttcgttct gttgatactg ctggcactgc tgtttctact ggccttaaag gaaacctctc       120
     caaacaggat caaccaactc gagagctgct cccagaccaa catccatggc aacaggtccc       180
     ggtcagtcga aggatcccgt caattcatct acctcagatc aaggatatac agatcctgtt       240
     ggaaatcatc aagaactctg ctggagaaga aaaatactcg accaagagta caccaggaaa       300
     tggagtgcga attaactgta ttgatatgga aacctataac gcaattaaaa agaaattaat       360
     agacaacaac actcttatgt atacccatca aaaaaaatca gaacgagggt ttagggtcgt       420
     tattcggcac ctacaccact caacgcctta tcagtgggta gcagccgaat tggaaaagca       480
     agggttcact gttagatacg ttagggtcat gcgtcaccga ttcaatggta atcccatgaa       540
     catttttgaa attgaggtac aggtaaactc cgatggcaag cacttgggaa ttctcaagat       600
     aaaaaagctt ggcagtcagt cagtagatgt agagagaatg aacaagccac gcgaaccagt       660
     tatgtgccac cgctgccaag catatgggca tacaaaaagt tactgccagc taccttataa       720
     atgcatgaag tgtgccgaga aacattcaac tacagcttgc ttaaaaccta ggaatgttgc       780
     tccaaaatgc gcaaattgtg gtggtaaaca tgttagctgt tacaaggggt gtgaggcatt       840
     taaagcggcg cgtagtaggc ttagaaacaa ccaagctaat aggggggaaa aaccaacagc       900
     tcttaacgtt gagcagccca aaaaaaatat taaacatctc tggttgccca catcagcaaa       960
     tgatgccgaa ttatcctaca gccaagttgt tcgtggatgg aacccggccg aggctcacat      1020
     aaaaaggctt caaaatagga tttatgatga acaacaattg aactccaccc ctcaacagcg      1080
     gaatccgttt aaatctagcc cttctattgg cacggcgaag accaataaac aggcgcgtac      1140
     caggaagact ggaaagatcc ctggtactaa atgacagata taaattaaag aaactctgga      1200
     aaatcacaaa tactctcaag aaacagcctc agccaaattt tcccataaaa attaatctaa      1260
     acacggaagc aagtaaaaat aactcgcaga taaattggac caaaaccatt tcggaaaaag      1320
     cagaagagtt tgtcaaacac cttgagaata gatttagccc gaagctatta aatactaatc      1380
     caagctgatt ttgaaacccg ccttaacgaa agttctgaag ctgctctaag acctgtcact      1440
     tttctagagc taaagcttga aatagaatcg ctggatttaa acaaggcacc gggaagagac      1500
     aaaattgaca acaagttaat caaacaactt ccaaaaaaag cgttgcttta tttggttctc      1560
     atctataact ctatcttaag acttggacac tatcctgcgc aatggaaaca tgctactatt      1620
     tcgttaattc tgaagcccgg aaaagacagt tcagaggtat cttcgtatag accgataagt      1680
     cttctttctg ggctctcaaa aatattcgag aaaatgctgt tgaaacgcct attcgaattt      1740
     cctttgtttt cgaaagctat tccatgtcat caattcggtt tccgtcgaga acacgccact      1800
     gagcagcagc tggcgcgcgt cacgcaattc atattaaatg cttatgaaaa tcacgaatca      1860
     tgctcagctg tcttcattga tattactgaa gccttcgata aagtctggca tgctggcctt      1920
     ctgaataaac ttgtcaaaat agtacccttg aaaatgttta gaatattgga aaattacctt      1980
     agtaacagaa cctttgaagt caactctaca gatggttcta aatctcgcgt aggaaaaata      2040
     aacgctggag tgcctcaggg cagcaatctt ggtcctgtgc tttactcaat ttattcatca      2100
     gatatgccaa ctccggagac catacaaaaa ccatcatctt ctagttttcc tgttcctaga      2160
     gttcaagaca tgatgctggc gacttacgct gatgatacca ttatcctgag caaaagtgac      2220
     aacccaatta cgaagattac ctaaaacact tctctgactg ggcagaaaaa tgggccatta      2280
     cagttaacag agctaaaact ggtcatgtca tgtttacctt aaaaaaccta aaacgaatta      2340
     aggaacaatt tcgttttaaa ggccctataa ccccgaaaat aaatgggcaa gccattccta      2400
     cgagtactaa gcaaacctat cttggtgtta tattggatag caaacttaac ttgacttcgc      2460
     atgttaatct tctgcgcaac aaaatcagaa ccacagctaa gaaacttgat tggataatgg      2520
     gcaaaaatag cagtctgcaa aacgactgta agatggtttt actcaaacaa cttatcacgc      2580
     caatatggca gtattccatt gcggtatggg gatctctcgt ctcagagtcg caaatcaatc      2640
     gtatccagac agctcaaaat aaggttatca ggaactcact taaggcaacc agatatacaa      2700
     gaaatgacac gataaggaat tcctacaaca taaaaactgt ggatgatatc tacgaacagg      2760
     cgagtgaaag atttgcaagg tcactttcaa tacaccagaa tccagcggta cggcgtatac      2820
     tggaggagcc gtacatccca caaagacttt tgtttaaaag gcaaagatat ttgaaacaac      2880
     taaaccgcca tttttctcca cttcgagacg gcctacaacc tttgtgggaa ccgccactgc      2940
     ctataattcc ggagagttcc agcttcaatg attttgcaac gagtgaacaa aaaaatattc      3000
     attatttttt gaggcaatat atccgccatg aacttccaac tttattaaga ctagaggacg      3060
     aggaacggga aaaaaaagaa attgctgaaa gggagcggtt ggcagcagct gagaagatga      3120
     aacccacacc tgtacccagt agactttgtg agggaactat taatcacctg aagagggctc      3180
     atgcacatgg aactcgtacc cgtaatttta ttgctcaaag gatcagaggt caacacataa      3240
     caatacaaag actcataatt cctgactttg agggagacga ggaacatcaa aaactgctcg      3300
     aagctgctga aagggatcat ccaccgtcac ttacaggtat cctaaaggta cacacagtcg      3360
     ctcaattgac ctccaataaa ccaggggtca aaaaaggaga ggggtcccga atacataccc      3420
     aggacacgct ccctgccacc tcaactgagt ctgtttgcca ggagaaccag ctgactgcta      3480
     atattgagca actacgtcaa agactacacc tacttgttga caatgaaccg acagacgaac      3540
     gcggaatcca gactcagagt gtagtagaag gcagagaaat aaggggtgct caccatagta      3600
     cgataaatcc ccgcaaatca ctcatgtcct tcctgctata ctttcaatat tcacagagaa      3660
     tggaacctgt gccagagcca ccagcttcaa ttcaacgggc aatctgtgac ctgtgtggaa      3720
     ggcagcacat tgtgtctcgt cgccgagcag gagtcctcca ggtcactgca acatgcataa      3780
     gctgttctgg gcgatcgtca gtgcgctgaa tggcacggat gttttcctgc tgttattgac      3840
     ctgtgatgta cggaggacaa attgtaattt ttatttttgt aaatacaaat ttaataattt      3900
     aataatgaca ctggatacaa acgggcgaac cgcatgcgag a                          3941
//
ID   Jockey-15_DTa repbase;    DNA;    INV; 4824 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.10, Created)
DT   07-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4824
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5932-5932 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The consensus is ~92% identical to
CC   those of Jockey-1_DBp and Jockey-8_DK.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..1938
FT                 /product="Jockey-15_DTa_1p"
FT                 /translation="MDENTPSYPPLPKEPPGFEKMREIAGQSPAELRTKLV
FT                 KDLAQRQLDALRQRNADAVKTSSATPVTNTVTATSASSGTTTYTVAASSYT
FT                 SPVSTAGTSLSLGANNLLILPATGCSFQAPSTTRSRKRNPPSCGKERDDIK
FT                 KTKANVNNAKIVNLNQASTSNGLRNNRFAPLAEESNPIEEMETNEETNDPI
FT                 DQAQIPSQKPPPICVPKVTDILTLERTLDEIIAASSYEIRTSKFGITRIYT
FT                 DSAESFRKVVRSLTALNCEFWHHQLREDKPFKLVLRNIHSTVPKEEIERCF
FT                 TDKGFNVVNIYCPRKPGTRGTTADVNVDDRQNLFYVNLKMTTNVAESLKIK
FT                 QIGRHRVTVEKATRNKDLVQCYKCQNFGHTQNCCFIKPVCGNCAGDHPTNS
FT                 KSCESILNNQCMCANCGENHPAGFKGCKVRMELSRKHKSAIRLSNSTNSRT
FT                 NESRHGQLFSMSATRDGVSYADMARNNLPSTSATATQSSAHIPGGDRNPNK
FT                 NLSTLEKAIFDINTRLDQLFKLVMETIESNKAFRDLVQVLISRK"
FT   CDS           1938..4655
FT                 /product="Jockey-15_DTa_2p"
FT                 /translation="MTVSTIKIGLWNARGIVQKSEELRLFLIDNSIDIMLI
FT                 TETHMRPGLNLYLPGYDQYFANHPSNTAKGGSAILIKTSIIHTQSEPTTRT
FT                 DLQLACIEILTNGGVVKIASLYLPPSEPWTKNNFDQLLVSLGPKFLAGGDF
FT                 NAKHQWWGNLRSCCRGKRLQEAIVSSSSQVLATGEPTFYSSNTRLTPTALD
FT                 FFIVNGVPLNKLSIETKYELSSDHLAIVATLSQIPQCKAKRKSLLPPGSSV
FT                 EKFKESLDRSINLNAVINHPDDLEAAVAAFMENIYTAATAASPNQRHPPNQ
FT                 SRSNLLPQNALVLIQLKRRVRREYTRTGDIRVYKVYKRLSNRLSKVLSMNK
FT                 QDHIDQMLENASPDASTNYSLWKLTSRFKRQVTPKAPLRNPTGGWCGSSQQ
FT                 KADIFADNLENRFKPLDLTPMENRMLVEMQLDRPFQMALPCKPVTLEEVKA
FT                 QIGKLKNKKAPGEDLLDNKTLKILPIKALLFIVLLFNSVLRMSHFPSAWKN
FT                 AIITMIPKPGKQPTEVDAYRPISLLPALGKMMERVILNRILGQERVSRAIP
FT                 KWQFGFRKSHGTPEQLHRVVNFALEAMENKMYSVAVFMDIQQAFDRVWHDG
FT                 LLSKLKSLLTPQLFLLIQSFLAERKFSVVVDGEKSSKRPISAGVPQGSVLG
FT                 PTLYSLYTSDMPDSWVCTEVDDDNMLIATYADDTAVMVRSPSMEIATLGLQ
FT                 EYVTRFEKWTTEWNIGINCSKCACVTFSTRPKDCPGISMLGSVLRHEAYYK
FT                 YLGVILDRGLTFQRHTTMIKQAVLSKAASMSWLLSPRNKLSLSNKVRIYKS
FT                 ILSPIWKYALQIYGIASKSNLNKIRVAQSKIVRSICNAPWFMRTRDIERDL
FT                 KIPKIGDVIRMHAEKHYNRLGSHPNSLARRLIWRPTRRRLKRYHPHDLPLR
FT                 SI"
XX
SQ   Sequence 4824 BP; 1521 A; 1140 C; 988 G; 1173 T; 2 other;
     gtcgagtttg tgcacttgta tcgtacggtc gtgttaagct cctaattagc aatcagagag        60
     tgatcctcaa cttcttctgt tgtgcttatc agcgcgttat ctatttttag actccgttac       120
     gccggggtct ttaccgagtc cgacttattt accacccgag catagtgtaa gcgttgtgta       180
     cgactttgcc cattgggctc ggtcttgtct ctcgcttgcg cttgcactgc ccagcgagag       240
     ataagaagta aagacttttg aagattttga atttgatttc tattattttc gtaatcgaaa       300
     attatagtaa attaataaat ggatgagaac acaccttctt atccgccgct cccgaaagag       360
     ccacccggat ttgagaagat gagggaaatc gctggccaat caccagcgga acttcgaacc       420
     aagcttgtaa aagacttggc tcaacggcaa ttggatgccc ttcgacaacg aaatgcagat       480
     gctgttaaga ccagctcagc aacacctgta actaacaccg ttacagctac gagtgccagt       540
     tctggcacca ccacgtacac cgttgcagct tcctcatata ccagcccagt ttctacagca       600
     ggaacgtctc tgtctttggg agctaacaat ctcctgatat tacccgctac cgggtgctcg       660
     tttcaagcac ctagtactac tcgtagcagg aaacgaaacc ctccaagctg cggtaaagaa       720
     agagacgaca taaagaagac taaggcaaat gtaaacaatg ccaaaattgt caatttaaat       780
     caggcttcga cctccaatgg acttcgcaac aaccgcttcg cacctttggc tgaggaatcg       840
     aacccaattg aggagatgga gacaaatgag gagacgaatg atcccattga ccaagcgcaa       900
     attccaagcc agaaacctcc acccatatgt gttccaaagg tcactgatat cctcactctg       960
     gaacgaaccc ttgatgaaat cattgcagca agtagttatg agattcgtac atctaaattc      1020
     ggaattactc gcatatacac tgacagtgca gagtcattcc gcaaagtggt tcgtagcctg      1080
     actgctttaa attgcgagtt ttggcatcat caactccgtg aggacaagcc atttaaactg      1140
     gtgctaagga acatacattc cacagttcca aaggaggaaa tagaacgttg cttcacggac      1200
     aaaggtttca acgtagtgaa tatttactgt ccaagaaagc ctggcacgcg cggcactacg      1260
     gccgacgtta atgttgacga tagacaaaat ctgttctatg tcaatctgaa gatgactacg      1320
     aatgtcgccg agtcgcttaa aatcaaacaa ataggaaggc accgagttac agtggaaaag      1380
     gctacccgaa ataaggacct cgtccaatgt tacaaatgtc aaaattttgg ccacactcaa      1440
     aattgttgct tcataaagcc tgtgtgtggg aattgtgccg gagatcatcc taccaactca      1500
     aaatcgtgcg agtcaatcct taacaatcaa tgtatgtgtg caaactgcgg agaaaatcac      1560
     cctgcaggtt ttaaaggctg caaagtcagg atggaactaa gcaggaaaca caaatctgca      1620
     ataaggctaa gcaactcaac gaacagcagg accaacgaaa gccgacacgg tcaactattc      1680
     tccatgtcag ccaccagaga tggcgtctct tatgcagaca tggcaaggaa taaccttccg      1740
     agcaccagcg ctacagctac gcagtcttct gcacatatac ctggaggcga ccgcaacccc      1800
     aacaaaaatt tgtctacctt ggagaaggca atattcgata ttaacactag gctggatcaa      1860
     ctcttcaaac tagtcatgga aacgattgag tcgaacaagg cttttcgcga tctagttcag      1920
     gttctaattt ctagaaaatg acagtctcaa caataaaaat cggattatgg aatgcaagag      1980
     gtatagttca gaaaagtgaa gaacttcgtc ttttccttat tgataactca atagacataa      2040
     tgctcattac cgagacacac atgcgtcccg gtcttaattt gtaccttcct ggttatgatc      2100
     aatactttgc caatcaccct agcaacaccg ctaaaggcgg ctctgctatc cttatcaaga      2160
     ccagcattat ccacacgcag agtgagccca caacgcgaac agacttacag ctagcttgca      2220
     ttgaaattct aacaaatggg ggtgttgtta aaatagcttc tctgtatctt cctcccagcg      2280
     agccttggac aaaaaacaat tttgaccagc tactagtctc tctaggccca aagtttttgg      2340
     ctggaggcga ctttaatgcc aagcatcaat ggtggggaaa tttaagatcc tgctgccggg      2400
     gaaagcgtct tcaagaggcc atagtttcta gctcaagcca agttctagct actggggaac      2460
     ctacctttta ttcctcaaat accaggctca caccaacagc tcttgacttc ttcatcgtaa      2520
     atggggtacc actcaacaaa ctttcgatcg aaaccaaata cgagctatcc tcggaccatc      2580
     tggcaattgt cgcaacgcta agccaaatac cgcaatgcaa ggccaaaaga aaatctcttc      2640
     taccgcccgg ctcctctgtt gaaaagttta aggaatccct ggacagaagc attaacctca      2700
     acgctgtcat caaccatcca gatgatcttg aagctgcggt agcagccttc atggaaaata      2760
     tatacacagc tgcgacagct gctagcccga accaaaggca ccctccgaac caaagcagaa      2820
     gcaatctgct cccacaaaat gctctagttc tcatacagct taaaagaaga gtccgccgag      2880
     aatacacaag aacaggagat attcgcgtct acaaggttta taaaagattg tcaaatcggc      2940
     taagcaaagt cttgtccatg aacaagcaag accacataga ccagatgttg gagaatgcga      3000
     gcccagatgc atcgaccaac tactccttgt ggaaactcac aagccgattc aagagacagg      3060
     tcaccccaaa ggctcctctc agaaatccca ctggtggttg gtgtgggtca agtcagcaga      3120
     aggcggatat ctttgctgat aatctagaga acagatttaa gccgctagat cttactccga      3180
     tggaaaatcg aatgcttgtg gaaatgcaac tggacagacc tttccaaatg gctcttccct      3240
     gtaagcctgt aaccctggaa gaagtcaagg cacagatcgg aaagctcaaa aacaaaaaag      3300
     caccaggaga ggaccttcta gacaataaaa cactaaaaat tcttcccatc aaggcactac      3360
     tatttatagt cctgttgttt aacagcgtcc taaggatgag tcatttccca agtgcatgga      3420
     agaatgctat catcacgatg atacccaagc ctggaaagca acccactgaa gtagatgcat      3480
     acagaccaat tagcctctta cctgcactgg gcaaaatgat ggaaagagtc atactgaatc      3540
     ggatccttgg acaagaaaga gtaagcagag ctattccaaa gtggcagttt ggatttcgaa      3600
     aaagtcatgg cacacctgaa cagctacatc gcgtggtcaa tttcgctctg gaagccatgg      3660
     aaaacaaaat gtactcagtt gcagtgttca tggacattca acaagccttt gatagagtat      3720
     ggcacgacgg tcttctaagc aagctgaaga gcctccttac gcctcagctt tttctcctca      3780
     ttcagagctt cttagctgaa agaaaattca gtgtggttgt cgatggagaa aagtcgtcaa      3840
     aacgcccaat ctcagctggt gtaccccaag gcagtgtact aggtccaaca ctatactctc      3900
     tatacacatc agatatgcca gattcctggg tctgtaccga agtcgacgat gataatatgc      3960
     tgatcgcaac ttacgccgac gacactgctg ttatggtcag aagtccaagc atggaaatcg      4020
     caaccttggg cctgcaagag tatgtgacac gttttgaaaa gtggacaaca gaatggaaca      4080
     taggcatcaa ctgcagcaaa tgtgcttgtg tcacattctc cacaaggcca aaagactgcc      4140
     caggaatctc catgcttggt tctgtacttc gtcacgaggc ctattacaag taccttggtg      4200
     tgattttgga tagaggactc acttttcaga gacacacaac catgatcaag caggctgtgc      4260
     tttcaaaggc agcaagtatg tcctggcttt tatcaccaag aaataagctc tcactgtcca      4320
     ataaagtgag aatctataaa tctattctca gcccaatctg gaaatatgca ttacaaatct      4380
     acggcatagc gtcaaagtca aatctgaaca aaataagagt agcgcaaagt aagattgtta      4440
     gatcgatttg taatgccccc tggttcatga gaactagaga tatagaaaga gatctcaaaa      4500
     ttccaaagat aggcgatgtc atacgwatgc acgcagaaaa gcactataat cgccttggct      4560
     ctcatccwaa ctccctagcg aggagactaa tatggagacc tacaagaaga agattgaaaa      4620
     gataccaccc acatgacctt cctttaagat ccatttaacc gtttaaagct taaaatttaa      4680
     aatataaata atatagagtt aatgtataaa catctatacc cacattttgt tattccctgt      4740
     aatttacaac ctgctcaagc tgccacatag gtagcagtat acctgttatt gttgaataaa      4800
     tataaacctt ttttaaaaaa aaaa                                             4824
//
ID   Jockey-16_AAe repbase;    DNA;    INV; 4385 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-16_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4385
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1382-1382 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1454
FT                 /product="Jockey-16_AAe_1p"
FT                 /translation="MIRRNYKVPARDITSDTQGAKRQKTDTSHRHPECFSQ
FT                 PVANVPISNEFSLLDGTTDMESQELPTNSGNSSQSQGKRRRFPPISIVNKG
FT                 TKEVRELLNIGNIPQHVYHMKAIKSGVQLSISGNQEGQIHHPKIISTLKES
FT                 SVEFFTYTAAENQPVKIILSGLPDYTTQQLKEELEANNVYAKDIKTFWQKK
FT                 IGPEVSTLYLLYFEKGKVRLSELQRVKTLFSIVVKWRYFTRKTSDAVQCFR
FT                 CQRFGHGMQNCHVSPLCVKCGEKHLSASCSLPVKADLSKVDPAATRSKIRC
FT                 ANCSGNHTANYLGCVARKNYLQRREATKNNQHQRKPSKQAFVPTSANWPSL
FT                 NGESTSEPTRLLHQNPRPFRSYSEVLTSSENEASAAHTNDLFTLTEFMCLA
FT                 RDLFARLKGCRNKEQQFMALSELMVKYVYHV"
FT   CDS           1441..4119
FT                 /product="Jockey-16_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MCIMSNLQTLRVVNWNSRSVANKKIEFFDFLDRFHID
FT                 VGIVTETWLRPTSSFFHPRYNCIRLDRRSSENERGGGVLIAVRRDIKFVAL
FT                 NITTKSVECTGISIPTENGINVRFIAAYFAGVRTSTDWNQYRIDLRNMMRS
FT                 NEPLFVVGDLNARHRKWNCIKANKAGNILQSVVAQCNFHIHYPDTFTFHPT
FT                 GRGRPSTLDLVVSNNMVNMTKPIAHNELSSDHLPVTFDIHLNTEPTESVNS
FT                 IRCYKRADWSKFQRVVNSKLDLLDPSYAALNSVADIDRAIDQLTQTLLEAE
FT                 NVAVPLVNIRAYDTPTVPESTRLLIALRNRRRRQWMRTRDPIYKQIVHSLN
FT                 SRIAEECNQVRFRKFRETLQTMEHGSNQLWKITKALRNNCKYSPPLRDNST
FT                 IVASPALKAKVLADSFSKFHSNSMESDPQTTEDVNRTLEFLDQADPAPDNS
FT                 WLVRPKDVQRQIRNLKNKKAPGQDQIRNVMLKNLPRKGIVLLARLFSACLK
FT                 LCYFPSRWKHAVIIAIPKPNKDATLPSNYRPISLLSCLSKLLERFILIRIE
FT                 AHLDVSRIIPNEQFGFKKGHSTCHQLVRLVKQVRSGFTQGKSSGMILLDVE
FT                 KAYDSVWQAAILHKMNRGNFPIATTKIVRSFLKDRSFHVAVDGEVSERKQI
FT                 PYGVPQGAVLSPILYNIFTADMVMIADVQYYLFADDTGFVASHRDASVVVE
FT                 KLQQAQQSLEAYQRQWKIKANAXKTQAIFFSRKRSPRNLPQREIRANGQSI
FT                 PWSEVVQYLGASLDRKLTFAQHVSNSLKKCDKLTKALYSLVNRRSALDVRT
FT                 KLLLYKTVFRPTLTYAFQAWHTCSQSHRTKIQRKQNRVLKMMMNLDYLHPT
FT                 DDLHEQAGIELIDDWFQRLLPKFLIGCRTSENPLLEELVE"
XX
SQ   Sequence 4385 BP; 1312 A; 1079 C; 896 G; 1097 T; 1 other;
     ataaattggt aaacaaacaa ctgtcaaacc gtacctacta gctatcggaa cgctcttaaa        60
     ttttcaacaa ttatcgattg tttagtcaat cactctcgcg ttacgttgtg aaagtggcat       120
     ccagaaaact ggacaatgcc ggggcaaatg aaggtggatc gtccggttct tcctacgtga       180
     tgattcgccg taattacaaa gtacccgcgc gcgacataac ctcggacact caaggtgcaa       240
     aacggcaaaa aacggatacc tcacaccgtc acccggaatg cttctcccaa ccagtagcaa       300
     acgttccaat ttcaaacgag ttcagcctgt tagatggaac caccgacatg gaatcgcagg       360
     agctgccaac aaattcggga aacagttctc aatcacaagg aaaaaggaga cgatttcctc       420
     ctatttctat tgtcaacaag ggcaccaagg aagttcgcga actactcaac atcggcaata       480
     ttccccagca tgtgtatcac atgaaggcga ttaagtccgg cgttcaacta tccatcagtg       540
     gtaaccaaga gggccaaatc caccatccga aaatcatctc aacgctaaag gaatctagcg       600
     tcgaattttt cacctacact gcagcagaaa accaaccagt gaagataatt ttgtccggcc       660
     ttccggatta caccactcag cagctgaagg aagaactcga agcaaacaac gtgtatgcca       720
     aagatatcaa aaccttctgg caaaagaaaa ttggtcccga agttagtacg ctttatctgc       780
     tgtacttcga gaaaggcaag gtcaggctgt cggagctaca aagggtgaaa acactattta       840
     gtatcgttgt caagtggaga tacttcactc gaaaaacttc cgatgcagtg caatgtttcc       900
     gatgtcaacg tttcggacac ggaatgcaaa actgtcatgt ctctccactc tgtgtcaagt       960
     gtggggaaaa acatctctca gcctcatgct cgcttcctgt aaaagcagat ttaagcaagg      1020
     tagatccagc tgccactcgt tcgaaaatac gttgcgcaaa ttgcagtggc aaccacaccg      1080
     ctaactatct cggttgtgtc gccagaaaaa actatcttca acgccgtgaa gcaacgaaga      1140
     acaatcagca tcagcgcaaa cccagcaaac aagctttcgt acctacgtct gcgaactggc      1200
     catcgctgaa tggagagtcg accagtgaac caacaagatt gctccatcaa aatcctcgac      1260
     cgttccgttc ctactcggaa gtgctaacaa gctccgaaaa tgaagcgtca gcagcacaca      1320
     ccaacgatct cttcactctc actgagttca tgtgcttagc tagagacttg ttcgctcgtc      1380
     taaaaggatg tcgcaacaaa gaacagcaat ttatggctct ttcggagctg atggtcaagt      1440
     atgtgtatca tgtctaattt acaaacctta cgagtggtca actggaacag caggtctgta      1500
     gcaaacaaga aaatagagtt cttcgatttc ctcgatcggt tccatatcga tgttggtatt      1560
     gtcaccgaga cctggctacg ccctacgtcg tcgtttttcc acccaaggta caactgcatt      1620
     cgactcgatc gacgctccag cgaaaacgag cgagggggag gtgtactaat cgccgtccgg      1680
     cgagatatca agtttgtcgc gctgaatata accacaaaat ctgtggaatg taccggcatc      1740
     tccataccta cggaaaacgg aatcaacgtt cgcttcattg cggcctattt tgcgggagta      1800
     agaacatcga ccgattggaa ccaataccgc atcgacttga ggaacatgat gaggagtaac      1860
     gagccgttgt ttgtggttgg tgatttgaat gcaagacacc ggaaatggaa ttgcataaag      1920
     gctaacaaag caggaaacat tcttcaaagc gtggtagcgc agtgcaactt tcatatacat      1980
     tatccagaca cgttcacttt tcaccctacc ggtcgaggca gaccatcaac tctagatctt      2040
     gtcgtgtcca ataatatggt taacatgacc aaaccaatag ctcacaacga gttgtcatct      2100
     gaccatctgc cagtcacatt cgatattcac ctcaacaccg agccaactga atccgtgaac      2160
     tcaatacggt gctacaaacg tgctgactgg tcaaagtttc aacgcgtagt taattcgaag      2220
     ttggacctgc tagacccgtc ctatgctgct ctaaatagcg tagctgacat cgaccgagcg      2280
     atagatcagc ttacacaaac actgttggaa gctgagaacg ttgcagttcc cctagttaac      2340
     atccgcgctt atgacacacc gactgttcct gagagcactc gattgcttat cgcactacga      2400
     aaccgccggc gtcgccagtg gatgcggaca agagatccca tctacaagca aattgtgcat      2460
     tcgctcaact ctagaatcgc tgaggaatgt aaccaggttc gattccgcaa attcagagaa      2520
     actctccaaa cgatggaaca tggaagcaat caactgtgga aaataactaa agcattgcgg      2580
     aacaactgta agtacagccc gccactccgt gataattcaa caattgttgc atctccagca      2640
     ctgaaggcta aagtgcttgc tgatagtttc tccaaattcc attcgaactc aatggaaagt      2700
     gatccgcaaa ccacagaaga cgtcaatcga actctggaat tcctagacca agctgatcct      2760
     gctcccgaca attcctggct tgttcgtcca aaggacgtac aaaggcaaat tcgcaaccta      2820
     aaaaacaaga aagccccagg tcaagatcag ataaggaatg ttatgctgaa aaatcttcct      2880
     cggaaaggca ttgtcctatt ggctagactg ttctcggcat gcctgaaatt atgttacttc      2940
     ccatctcgtt ggaagcacgc cgttattatt gccatcccga agcctaacaa agatgcgaca      3000
     cttccctcaa actatcgtcc gatcagtctc ctttcctgtc tcagcaaact tctggaacga      3060
     tttattctga ttcgcatcga ggcacattta gatgtctcta ggattatacc aaacgagcaa      3120
     tttggattta aaaaagggca ctctacgtgt catcaattgg tgcgactagt taagcaggtt      3180
     cgatctggtt tcactcaagg taaatcatcc ggaatgatac tccttgacgt ggaaaaagca      3240
     tacgactctg tgtggcaggc agctatcctc cacaaaatga atcgaggcaa tttccctatc      3300
     gctactacca aaatagtacg ttcgtttctc aaagaccgat cgtttcatgt tgctgtcgat      3360
     ggcgaggttt ctgaaaggaa acaaataccc tacggcgtgc ctcaaggagc agtacttagt      3420
     ccgattctat ataacatatt cacagcggat atggttatga tagcggatgt ccagtattat      3480
     ctgtttgccg acgacacagg ctttgtggca tctcatcgag acgcttcagt agtggtggaa      3540
     aaactgcaac aagctcaaca gtcactggaa gcgtaccagc ggcagtggaa aattaaagcc      3600
     aatgctasca aaactcaggc catatttttc tcgaggaaac gcagtcctcg aaaccttccg      3660
     caacgcgaaa tcagagccaa tggacagtct attccctggt cagaagttgt tcagtacctc      3720
     ggtgcttcgc tggaccgaaa attgaccttt gctcaacatg tctccaacag tctaaaaaag      3780
     tgtgacaagc taacaaaagc cttgtattca ctggtcaacc gacgatctgc cctcgatgtt      3840
     cgtactaagc tacttctgta caaaactgtg tttcgaccaa ctttaaccta cgctttccaa      3900
     gcatggcaca cctgttccca atctcatcgc acaaagattc aacggaaaca gaatcgagtt      3960
     ctcaaaatga tgatgaactt ggactatttg caccccactg atgatctgca tgagcaagct      4020
     ggtattgaac taatcgacga ttggttccaa cggcttcttc ccaaattcct catcggttgc      4080
     agaacctcgg aaaacccctt gctagaagaa ctagtagagt agagctgtga tattgttttt      4140
     ttttactatt agattcatcc tctttttttt cctctaactg tcactcacct attgcaatta      4200
     cgaaggtttt ttctttctaa attttccttc ctaaagattg actaccatta aggaatttaa      4260
     atgtcagtat attttgctta gttctacgtc actgctgtta ggtcaaccca tctcagtcaa      4320
     aaactaaatg taacatgaat tgtaaactgt ctaagatctc aataaaacta taagtaagta      4380
     agtaa                                                                  4385
//
ID   Jockey-16_DTa repbase;    DNA;    INV; 4405 BP.
XX
AC   .
XX
DT   28-AUG-2021 (Rel. 26.11, Created)
DT   08-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4405
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample.
XX
SQ   Sequence 4405 BP; 1851 A; 1005 C; 552 G; 997 T; 0 other;
     tctcaacctc aaccatcgat caaaccaaaa gcttacctcc agatagtgac tgagaaaacc        60
     aatcaattca gacagtgact gcaaaaatca aagtggatca ttctgtgatc aaaaataaaa       120
     atcagcaatc tgcatatgca gttgctataa atcgaaaagc caaattaaag tctacaacaa       180
     agactcaaaa agtgcgaaat gagccgtata cggtaaacgt caaaaacttt aaagaatcag       240
     atggaaccaa caacaacatg tatccgccct tagaagcaaa cagttcaaca aaaaaccaga       300
     aggttcacaa caagaagacc acgaacaaga agacgtctac aacatcaaac acagcccaac       360
     caaattcaac atcagaaggt gagaacatcg ctaagaacct ccctgtaatt gtcctttaca       420
     atgaaaaccc atccaaactt aaagacatta taaaccataa atactctctc aacatcctca       480
     ataaaaatgt aacacacatc aaactttata atatagaaac acttgaaata actaaaacta       540
     tattcgctaa aaataaaatg aattttttca cctatactcc taaagaaatt aaaccccata       600
     atatagtaat taaaaaaata ccacccaccg tcttcagtaa agaagaagta aagagtgcgc       660
     tacaagaagc tgcaccggat ttagaaatcg tatcagtaga accttttaaa accaagccct       720
     ggcacatagt tatcaaaaag acatatcaaa tatttttaaa attcgatatt tgctaaactg       780
     caaagtagac atcgaatcgt acaagcccca cccaaaagaa ataaagcaat gccgcaagtg       840
     tcaacgtttt cgtcacgtcg catgaaactg taacatgcct tacaggtgcg taaaatgcgt       900
     tgaaacgcac gcccctgggc aatgtaaaat taaaaagccc gaaaatgaag acgaaaaatt       960
     tgaaaacgtg acccaatgcg tcaactgcaa cggacgacac acagccaacg caagaatttg      1020
     ccctacacgt aaaaaatata taaaagaagc attagataga cgtaacagac aatcccaaac      1080
     tctatttaaa aaaaataacc caccaaccta taacaaaaca caaaaccaaa taaaagaagg      1140
     cataagctac tcatccgccc taaaaacaaa ttacaacaat aataacgaaa caacaataat      1200
     aaaacaaaac cctatacacc aaaataatca gcttctatca tttgaaaaac taaataaaga      1260
     ctcaaacgaa gcattcggga aggacctact aacatgctac gaaattatga aaaacgtcgt      1320
     aaataaatac ctaaatacga aagaaaatta cacacaaaaa aaatttgctt ggttacaata      1380
     aatcaaagaa agctctaata ttagacttct taatacaagt cgctattaaa tgaagctaag      1440
     agtaatattt caaaatgtca atggaatagt tcttctaaga aaaagaatcg aactaaatca      1500
     gtttcttaaa aagcacaaac ctgatatatt tatgatcgcc gaacataacc taaataacac      1560
     acacgcacca aggctagaca cacataactt tataaaccaa aaaacaatat cccgagcagc      1620
     agcccaaaaa agacaaaatt caagaaaaga tcccggaaga cacgtagcaa tatgtctcaa      1680
     aaatggaata aaatacgagt acatcgccat tgaacaaatg gaattcattg aagcagtggg      1740
     cataaaaatc catcataccg accaacttaa cagaccctca ataaccatct ttatatcgct      1800
     atataaacgc cctcaacata aacttctagt ttcagacctc aataagctca tacattccat      1860
     atcaaaagaa caaaactgcg atcaactaat aatcggttgc gacttaaacg ccaaacacct      1920
     atcttggaac aagccaaacc tcagtccccg ccacaaaaac catgcaggat tagtcctaaa      1980
     ccaatggcta ctgagccaac caacatttac ccttattccc agccaagaac caacccaccc      2040
     aaataaagta ccagactcgt caatagactt ctatattatc tcaaccactg tcgcaataga      2100
     caatcatacg ttcatgtatg gatgcaaaac aataaaagat tattcctcag accacctcgg      2160
     ggtcgaatta actataaata acagaaataa aatcacctac gaccagccaa aaacaatact      2220
     caactttaat aaaataaata acctatattg gaacacaatt atcctccaaa acctaagaga      2280
     tataccaaac cacgaaaaca taagcccaag tgaaatagac acatatgtca gaaacttaac      2340
     ttaacttaac tccaacgaaa tctcgccaaa cattgaaccg cctgagcaat agttgcataa      2400
     aattaataaa aaccaaaagg aagctaagga gatccctcaa ccgccatcac aataccctaa      2460
     cacaagtcca acgtacacaa attaaaaaca ccataaaaga actagacatc caaataacaa      2520
     accacataga aataagcgaa gtcaattcga tataccataa actcagcaaa cttaacaata      2580
     acaaattaag tcacaaaaca attaaacaac taaacccaaa tatataaacc aaagatcagc      2640
     tttcacctga catctgcctc acaaacaagg aagcctcaac catcgttata aatctcaacc      2700
     taaattccca aacaataaca tcaacatttg gaaaagtcaa tgctctcgca tggtcttttg      2760
     agaaaattta gagagatcag cactcgacaa gccacgcatt tgcagcagca aatgacttca      2820
     tctttgagaa cctaactcac agacgcgcta caatttcctg tgcactagac ttcgagaaag      2880
     cattcgacac agtctggatc aacggtctca tatacaaaat gagccaaaaa tttaacttcg      2940
     gtgtaaaatt gatcaaaata atacaaagct acctatctaa tcggtcattt caagtacaca      3000
     gccccagtca ctctgaggtc tcaatgataa gaacaatccc agctggagtt ccccaaggat      3060
     cccaattggc tcccatactc tacaacatct tcttggcaga catacccgat tatcaacccc      3120
     acgcggcaac atatactaaa ataaaaagcc tcatctatgc agacgacatt ctactgctcg      3180
     catctgctgg gtcagtatcc agtgctcaga atgacattaa caactatctt gacacactct      3240
     actttaccaa atggcacatt aaaccaaatg taaacaaatg cataagctcc attctcaaag      3300
     gaccacgcct tgcgggtata tacaaaaatg ctcgaaaatg cattccaaat aagtatatat      3360
     ataaacggaa atcaaaaaat taaatttgac acacacttca aatacctggg cagaatatgt      3420
     gatgaaaaat taaactttag aaaacatata gattattgca aaacgaataa aattaaaact      3480
     aataaaccat atttccaaac caatagggac tgccccaaga tccaatatga acctcatcat      3540
     aaagacaact aaaatggcat acaaaaaact tatccaacca gttcgatcat gtggatttct      3600
     tgcatggatg aatataagca gcaacaaaat ggaagaactt cgccgccttg aacggaagat      3660
     cttgcgcacc tcaatcggcc ccctaagtag ggacgaaata acacatcatt acataacaaa      3720
     caaaacatta tacacaatag ccaacaccac aagaatagac aaatgtttaa aattctaaac      3780
     aaattcatcg atctaaataa aatcactcaa acgcaaatcc caccatattt tcctaccgaa      3840
     ctaataacca tacatcacag agatgacctt aaagaaatag gcattctcta tgaggaagag      3900
     ggaaacctca tcttctacca cagaaaaaac cactcaaccg accgaagaga tggattaatc      3960
     cataacccta gtcaataata ttatttaata aacacaagcc accatgcctt attttatttt      4020
     accctgtata tactctcctc tgtaaataca cccccactat tttagtctac tgtagttttt      4080
     aagatcacaa caaccaaatc aaacatcaaa tttctcaggg ttttctgttt tgtaatcatt      4140
     ttttccctga atttaaatta actatatata ttattaacta tatatatata tatatatgta      4200
     tatataaaac caattacaaa cacactacta tcaatgccgt acagagtaca aataagaata      4260
     aataataatg taaaatcgta aacccggaaa agctttaggc gctgggttaa aatgtaacac      4320
     taaataaact aagtaagcat gaacttgtca ctccctgtat tactattgaa taggattaac      4380
     tatgtatcta taccaaaaaa agaaa                                            4405
//
ID   Jockey-17_AAe repbase;    DNA;    INV; 4005 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-17_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4005
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1429-1429 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1122
FT                 /product="Jockey-17_AAe_1p"
FT                 /translation="MNLVRDLNQLIAKGLQAELRLLTDGVKITVPSTPHYK
FT                 SVTEYLDVVKAEYFTHDIASEKPLKVVLRGLPDMETSELMDTLKIANLQLV
FT                 QIFKMRRHNQAVKYRDQLYLLHLVKGSTNLTELKSIRALGNVVVQWERYKP
FT                 VHREVTQCGNCLNFGHGSKHCHMRSRCSKCGENHRSASCEVEAVVACLNCG
FT                 QNHSSMSRTCPKRNEFINIRKTVAQRTRPKPKKEINIIGENFPELSLPSQT
FT                 QRHPPPPVSPPGFRTYAEAANTPPSDAPYSMDQLALLFSELDKQTRACRTN
FT                 DQQVAVMMRFYYQHRSILSSTA"
FT   CDS           1334..3661
FT                 /product="Jockey-17_AAe_2p"
FT                 /translation="MLPDFRLSITEAVGIELTSSNGPIILIAAYCPIQCKD
FT                 ADGTTTQLKNDIQILTRRPSKFILAGDLNARHSIWGNIQSNKNGSVLANDA
FT                 QAGHYTIVHSESPTYFSPAGVGSTLDIILTNIPDNVTTPQALTELSSDHLP
FT                 VIFEVNTSITLREPQRRRNYHRADWPRFQQLVEESLDDHHTLNTTEDIDRA
FT                 IQSITDAIGEAEDRFIPATTISREFLQLDSVTKKIIAVRNSIRRQFQRTHN
FT                 LSKKILCKKLNKIIASRVQQIRNNKFSRDIENLPNHSRPFWRLTKVLKSKP
FT                 TPIPPIVDGNVKYITPIEKANTISRHFMASHRLGQGIASPMEEAVSDSKTR
FT                 LTETPNNFPANRKVTTEELKSAIRFSRNMKAPGFDGLFNIVLKHLGPNAHS
FT                 LIVEIFNSCLELSYFPSAWKLSKVVPIHKPGKDPTLASSYRPISLLSSLSK
FT                 LFEKCIYSRLLEHAEDNNILLEEQFGFRRGRSTIHQLQRVTNLVRRNKAVS
FT                 KSTAMAFLDIEKAFDNVWHDALTHKLLRYNFPTYLVKIIANYLSERTSQVC
FT                 IGSSSSQPYIVNAGVPQGSILGPILYNLFTSDIPALPGNGTLSLFADDSAI
FT                 SYEGRVIRALVSKLQKGIDEYTTYLKTWKICVNGAKTQTIIFPHKNSYRMV
FT                 PATNIQVEGAEIHWSDAVSYLGLIMDSKMLFRQHIDERVTKSTILLKRLYP
FT                 IINRRSKASLTNKLAVYKMIISPMLEHASSIWRGCARTHLQKLQVVQNNFL
FT                 RMILNRPRRTRTAELHRLANIEPLL"
XX
SQ   Sequence 4005 BP; 1273 A; 1061 C; 817 G; 854 T; 0 other;
     ccttcataag atggagtcat tgtgcctgtc tactttctcc ggctcccaaa caccaccgct        60
     gcggattcgg tggaacaagc caacaagaag ctactcagct ccaacaaata cgccactctg       120
     tcttccgatg gagtccagaa gaaggagaag ttgccgccct tctatgtcaa gggaaactcg       180
     atgaatctcg taagggattt aaatcagctc atcgccaaag ggctccaagc ggaactgcgc       240
     ctccttacgg atggcgtgaa aattacggtc ccatcaactc cgcactacaa atcggtgacc       300
     gagtacctcg acgtggtgaa agcggaatac ttcacccacg acatcgcctc tgaaaagccg       360
     cttaaagtgg ttttgcgagg ccttcccgac atggaaacca gtgagctgat ggacactctg       420
     aagattgcta atctgcaact ggtgcagata ttcaagatgc ggcgccacaa ccaggccgtc       480
     aaataccgcg accaattgta cctgctccat ctggtcaaag gttcaacaaa cctaacggaa       540
     ctgaaaagta tcagagctct gggcaacgtc gtcgtgcaat gggagcggta caaaccggtc       600
     cacagagaag tgactcaatg cggaaattgc ctgaatttcg ggcacggatc gaaacactgc       660
     cacatgagaa gccgttgctc caagtgtggt gaaaatcatc ggtcggcttc ctgtgaagtg       720
     gaagctgttg ttgcctgcct gaactgcggg caaaaccact cctcgatgag ccgtacttgc       780
     cccaaacgga acgaattcat caacatccgc aaaacggtgg cccaaaggac ccgcccaaag       840
     ccaaagaagg aaatcaacat cattggtgaa aatttcccgg agctatcgct tccatcccaa       900
     acccaacggc acccaccacc tccggtttcc ccacctggtt ttcgcacata tgcggaagcg       960
     gcaaacacac ccccaagcga cgcaccatac tccatggacc aattggcgct cctgttttcc      1020
     gaattggaca agcaaacaag ggcatgccgt accaacgatc aacaagtcgc agtaatgatg      1080
     cgattctatt accagcatcg tagcattctc tcttcgactg cttaacttca atgcctcttc      1140
     ggtggcaaat aaacaggtgg aaatcattga atttctccga acacacgaaa tcgacgtcgc      1200
     tctcataacg gagacgcacc taaagccaaa caaaaacttc agcctaccag atcatcaagt      1260
     cattcgcctg gaccgtatcg ctgcaagaaa aggtggtgta gctatagcca tccgacgtaa      1320
     cctcaagttc cgaatgcttc cggatttccg ccttagcatc accgaagctg tgggcatcga      1380
     actgacctcc tccaatggac ctatcatcct gattgcggcg tactgtccta tacagtgcaa      1440
     ggacgcagac ggaacaacaa ctcagctcaa aaacgacatc caaatattaa ctcgaaggcc      1500
     cagtaaattc atcctcgccg gtgaccttaa cgctcgccac tcaatctggg gaaacatcca      1560
     gagcaacaaa aacggatccg tgctagccaa cgatgctcaa gcagggcatt atacaattgt      1620
     acactcggag tcgcccacgt acttctcccc agccggagtg ggttcaactc tagatattat      1680
     cctcaccaac atccccgaca atgtaacgac acctcaagcc ctcaccgaac tgtcatcgga      1740
     ccacttgccg gtaatcttcg aggtgaacac ttcaatcacc cttcgtgaac cccagcgaag      1800
     aaggaactac catcgcgccg actggccgcg attccaacaa ctagttgaag aaagcctgga      1860
     cgaccatcac acgctaaaca caactgagga catcgataga gcgatccaat cgattaccga      1920
     cgcaatcgga gaggccgagg atagattcat cccagcgact acaatatcac gtgagttttt      1980
     acaactggat agtgtcacta aaaaaattat tgcggttagg aacagcataa ggagacaatt      2040
     ccaacgcact cataatcttt ctaaaaaaat actatgcaag aaattgaata agataatagc      2100
     tagtagagtc caacagatta gaaataataa gtttagtagg gatattgaaa atttaccaaa      2160
     ccactccagg cccttctggc gtttaacaaa ggtgctaaaa tcaaaaccga cacctatccc      2220
     accaatagtt gacggcaatg ttaaatacat tacaccaatt gaaaaggcaa atacgatatc      2280
     acgccatttc atggcatctc atagactagg tcaaggcatc gctagcccga tggaagaggc      2340
     agtaagtgac agtaagactc gcttaactga aacaccaaat aatttcccag ccaaccgaaa      2400
     ggttacaaca gaagaactaa agtccgccat tagattctcc cgtaacatga aagcccctgg      2460
     ctttgatggt ctattcaata ttgtcctcaa gcatttgggt cccaacgcgc actccctcat      2520
     tgtggaaata ttcaatagct gcctggagct cagctacttt ccgtccgctt ggaagctgtc      2580
     caaagttgtg ccgatccaca aaccagggaa agaccccaca ctcgcatcga gctaccgccc      2640
     aatcagcttg ctttcgtcat taagtaagtt gtttgaaaag tgtatctata gcaggctcct      2700
     cgagcatgca gaagacaaca atattctcct cgaagaacaa ttcgggttca gacgggggcg      2760
     ttctacgatc caccaactcc aacgagtcac caaccttgtg aggcggaaca aagcggtatc      2820
     caagtcgacg gcgatggctt ttttggatat tgaaaaggcg ttcgataacg tgtggcacga      2880
     tgccctcaca cacaaactcc tccgctacaa ctttcccacc tacctggtaa agattatagc      2940
     aaactacctc agcgaaagaa cgtcgcaagt gtgcatagga agctcctctt cgcaaccata      3000
     cattgtaaat gcaggggtcc cccaaggtag tatcttgggg ccaatactgt acaatctctt      3060
     cacgtcggat atccccgccc tcccaggaaa tggcactctc tcacttttcg cagacgactc      3120
     tgcgataagc tacgagggac gagtcataag agcactggtg tcaaagctcc aaaaaggcat      3180
     cgacgaatac accacgtatc tcaaaacgtg gaaaatttgc gtaaacggag caaaaaccca      3240
     aaccatcatt ttccctcaca aaaatagtta ccggatggta ccagcaacaa acatccaagt      3300
     ggaaggagca gaaatacact ggtctgacgc tgtaagctac ctaggcctca tcatggatag      3360
     caaaatgctt ttccgccaac acatcgatga aagagttacc aaaagcacaa tactgctcaa      3420
     acgcctctac ccaatcatca accgtcgctc gaaggcctcc ctaacaaaca aacttgcggt      3480
     ctacaagatg atcatatccc caatgctgga acatgcctcg tcaatctgga gggggtgcgc      3540
     aaggacccac ttgcagaaat tgcaagtcgt ccaaaacaat ttcttgagga tgatactcaa      3600
     ccgcccaagg cgcacgcgaa cagcagaact tcatcggcta gcaaatatcg aacctctact      3660
     gtaagaataa acacacgggc tgaaaaaatc caaaccaggg cacttgaatc tgaatcagca      3720
     acaattagaa acatatatgc ctgaaaattg caactaattc caaaacggga tgacaatagt      3780
     ttataggatt aggttaagtt aaattgtaag gaaaaaaaaa aactttttta ggaattaacc      3840
     aagtggttta actgtaaact cgcggaaagc tatgtaaatt aaactgaaat tattcaaaac      3900
     agacgaaact aagcagaaaa acttgtaaag ttgaaactct tacattgtaa aattactgta      3960
     ccaacaaaca aaaactagaa ataaaaacaa ttgtaataat aataa                      4005
//
ID   Jockey-1B_Hmel repbase;    DNA;    INV; 3361 BP.
XX
AC   .
XX
DT   20-FEB-2013 (Rel. 19.10, Created)
DT   26-AUG-2014 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1B_Hmel.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3361
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2797-2797 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.likely 5' truncated. It is a very
CC   recently active subfamily of Jockey-1_Hmel.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..3066
FT                 /product="Jockey-1B_Hmel_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAVINRFTPRPADSQLARIKPRALSIATFNANGVKRQ
FT                 KEAVSAFAHAHQLDILCIQETFLKPAVRSPGIANYRIVRNDRATHGGGTMI
FT                 YYKKNLHCIPLDPPSLEAAEASVCQVFLTGHQPLIIASVYRSPSRQLLESD
FT                 ILALLSMGDSVLLIGDFNCKHRLWNSSVTNVSGKRLLAFTEKYNACVIGPP
FT                 SPTRFSVLGTGDVLDIAILSNVALSQRSIDTILDLDSDHRPVILKLGDERP
FT                 SGPPTKTVVDWRRFAKLLRSNESPLKELIPGIADSAALAIDAANKFTDYIL
FT                 NTIQSCSKEVTNLPDGRFDISEKLRRLIRRRNVAMRRHDTYPTDNNRREFY
FT                 RLKRRVRFEFELLRGESWDKKLEGLAPSHQAFWALSRAFRVDCLSTMPPLV
FT                 RSDCSIAADDTEKAECLADSLEAQCTPSSQPCDPSHIARVDSAVAEWALTP
FT                 PQGEPLRPTSEDEVKVIIKNLKDRKAPGPDKLSNRMFKSLPAQFISLLVII
FT                 FNSLLKSCSFPDEWKEAIVIGIPKPNKPRNIPSSYRPISLLSCLGKIYERI
FT                 ILVRLSEVVEADSLLCNEQFGFRKKHSAIHQVHRVVEHIARYNLRDPSHSN
FT                 TAAIFLDIAKAFDKVWHNGLIYKLRAVYGLPDCLVHILRDFLSNRYFRYKV
FT                 EGTLSSPRLLRAGVPQGSTLSPILYSLYSSDIPLTPGVHLAMYADDTALFT
FT                 TSRCTILLKDRLQKAARALGEWFRQWRIEVNPEKSKAILFPLNKNIRVSTI
FT                 HLLDKPIPWEKQVKYLGVTLDSRLTFKPHITKVCNKAKYILNRLYYLINKN
FT                 SKMSLRNKLTLYKACIRPVLTYACVAFAHTKLAPLQKVQNKFLRIASGSPW
FT                 YVRNVDLHRDFELESIHEHCKRLAKRYFERAGSHANPLVAEACNYTPHAIR
FT                 RRPRSVLLDPDDAITVANGPYVGRKHTTHARHTHRRRRNRRRSLAYLTARR
FT                 RLGAVGSSG"
XX
SQ   Sequence 3361 BP; 875 A; 914 C; 751 G; 817 T; 4 other;
     agcgacttag cacttgtgtt aagattcgct agatgttttg atttcaaaga aatcaaagtc        60
     ctcgcggcga aacttaggaa cacgaacggt tccgacgatc gcgctcaagt tattatagat       120
     catatagatc tcatcgaagc cattcaaggc ttcgtcgcgg tttaaatttt tccaatggcg       180
     gtcataaata gatttacccc acggcccgct gactcgcaac tcgcgcgwat taaacctaga       240
     gccctgtcaa tagcgacctt taacgcaaac ggtgtcaaac gccaaaaaga ggctgtgagc       300
     gccttcgcgc acgcccatca attagatatc ttatgtatac aggagacttt tcttaaacct       360
     gctgttcgta gtcctggcat tgcgaactac aggattgtga gaaatgatag agccacccac       420
     ggtggaggca ctatgattta ttacaagaag aatttacact gtataccact cgaccctccg       480
     tctctcgaag cagccgaggc gtcggtgtgt caggtattcc tcacaggcca tcagccttta       540
     attatagctt cagtttatcg ttcgccgtct aggcaattat tagaaagcga cattttggcg       600
     ctacttagta tgggagactc ggtccttctg atcggggatt tcaattgcaa acatagactt       660
     tggaattcgt cggtgactaa tgtcagcggc aagaggcttc tagccttcac agagaaatat       720
     aacgcttgtg ttataggccc gccttctccc actcgcttta gtgtcctcgg cacaggcgat       780
     gtactcgata ttgccatact ttcgaacgtt gcactgtcgc aacgttcaat agataccatt       840
     ctcgacctag attcggacca tcgtcctgtc attctcaagt taggtgacga gcgcccctcw       900
     ggccctccca ccaaaacwgt ggtcgactgg aggagatttg caaagctcct ccgctcgaat       960
     gaatcccctc ttaaggaatt aatacctggc atcgccgact ccgcggcgct agcgatagac      1020
     gcggcgaata aatttaccga ttatatttta aatacaatcc agagttgttc gaaagaggta      1080
     acaaacttgc ccgacggtag gtttgatatc tcagaaaagc tcaggcgatt gattagacgc      1140
     aggaacgtag ctatgcgacg acacgatacc tacccgactg acaacaatcg tagggaattt      1200
     tacagattaa agaggagagt tcgattcgaa ttcgaacttc tgcgcggtga gtcgtgggat      1260
     aagaagctcg aggggctcgc tccatcgcac caggcattct gggcgctgtc gcgagctttt      1320
     agagtcgatt gtctctcgac tatgcctcct ctagttaggt cagattgttc aattgccgcc      1380
     gatgacaccg aaaaagcgga atgtctcgct gacagtttag aggctcaatg taccccgagt      1440
     agtcagccct gcgatccgag ccacattgcg cgtgtggatt ccgcggtcgc agaatgggcg      1500
     ctgacgcccc cgcaagggga accgctccgc ccgacctctg aagacgaggt caaagtcatc      1560
     atcaaaaacc tcaaagatag gaaggccccg gggcccgata aattgtctaa tagaatgttc      1620
     aagtccctac cggctcagtt catatctcta ttggtcatta ttttcaattc ccttcttaag      1680
     tcgtgctcat tccccgacga atggaaggag gccatagtca taggcattcc caagcctaat      1740
     aagccgcgga atatcccgtc cagttatcga cctatcagcc ttctcagctg tttaggtaaa      1800
     atttacgaga gaatcattct cgttagactc tcagaggtgg tagaggccga ctctctgctc      1860
     tgcaatgagc aattcggttt cagaaagaaa cattccgcca tacatcaagt ccaccgtgtt      1920
     gtagagcata tagctcgata caaccttagg gatccttctc acagcaatac agctgctatt      1980
     tttctcgata tagcgaaagc tttcgataaa gtctggcata acggcttgat ttacaagctg      2040
     cgcgccgttt acggcttgcc agactgtctc gtacacatcc tgcgggactt tctctcgaat      2100
     agatactttc gctataaagt cgaaggcact ctctcttccc cccgcctcct ccgcgcaggc      2160
     gtgccacaag gctctacgct aagtcctatc ctgtactcgt tgtactccag tgatatcccg      2220
     ctcactccgg gtgttcacct ggctatgtac gccgacgata cagccctctt cacaacctcg      2280
     cgttgtacta tcctattaaa agatcgactc cagaaagcgg cccgcgcact cggtgagtgg      2340
     ttccgccaat ggagaatcga agtcaatccc gagaagagta aagcaatact cttccctctc      2400
     aataaaaata twagagtctc taccatccat ctcttagaca aacccattcc ctgggaaaaa      2460
     caggtcaaat atctaggtgt cactctagac tctagattaa ctttcaaacc ccacattaca      2520
     aaagtctgca ataaagcaaa gtacattctc aatagattat attatctcat aaacaagaat      2580
     agtaaaatgt cacttagaaa taagctgaca ctatacaaag cttgtattag acctgtcctt      2640
     acttacgctt gcgttgcgtt cgcgcacacc aagcttgctc ccttgcaaaa agtgcaaaat      2700
     aaattcctgc gcatcgcatc aggttccccc tggtacgtgc gtaatgtcga cctacataga      2760
     gattttgaac tggaatcgat tcacgagcac tgcaaacgct tagcgaagcg ctactttgag      2820
     cgcgcaggct cgcacgcgaa ccccctcgtc gctgaggcgt gtaattacac gcctcacgcg      2880
     attcgtagac gcccgcgtag cgtcctctta gaccccgatg acgccattac cgtagcaaac      2940
     ggcccgtacg taggtaggaa acacactaca cacgcacgac acacacaccg tcgtcgccgg      3000
     aatcgacgac gtagtctagc ttatctcacg gcccggcggc gcctcggcgc cgtcgggtcc      3060
     agcggttagg gaccgttagc tcccttagat tagtctaatt ttatcccccg gtcgcggctt      3120
     ctgtgtcgcg gccggctttg cttagaatag ggaaactccc agcccgctcg acgaccgcaa      3180
     gccgaggttc gagccccgca gggggcgccc ttgcgtcgtc ggcactcccc acaggcagcc      3240
     acacagtgcc tgcatatttt cagggacaga gtaccctctt ccctacccac ccggtgtcgc      3300
     tgtaaaggcc agtaaggcta acagcattaa agtcaagtcc gaaaaaaaaa aaaaaaaaaa      3360
     a                                                                      3361
//
ID   Jockey-1B_LMi repbase;    DNA;    INV; 2072 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.11, Created)
DT   04-AUG-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2072
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3104-3104 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2072 BP; 363 A; 876 C; 269 G; 564 T; 0 other;
     cacacccatc accacacacg atctacagct gacactctgc acgaaacgca acacagctcc        60
     cggccacact gtatcaccta ttgccacctc cgtgaatgcc cccttccctt cctcaccacc       120
     ctagcaccct ttataccacc atcctttaca ccggttacta cccccacctg tggaaatctc       180
     attttcctta aacccaacaa cccccctcga tgcctcctcc taccatccaa tttgcctcac       240
     cctggtgttc agcaaggtct tcaaatccat cctatcccat cgcatccatc ccacctccgc       300
     ttcaccacct ttcctgacac ccaatgtgct ttcatcctcc ttctccactg agaccaactc       360
     ctgccttacc caactcctct ccctccagct caattcccgt cgtgctgcca tctttgtctc       420
     cctagacctc gaacggccta tgattgggtc tggcattggc ctgctcttca actccaaacc       480
     catgctcttc ccatcaacct tgtccgggtc attcctctcc aaccctacct atgttaccat       540
     cccacaccat tcccctttct atcctctgct gcgtgcccca aggttccgtc ctctccccct       600
     ccttatcctc ttataccgca gatatgcctc ccccatacac ctcttccaat acgctgatga       660
     cacgctttcc ttgccttagc ccctcgcccg ttccaaccgc cttctccaag aacaccttac       720
     cttttcacca cttgtgcaac cagtggctcc ttctataaat cctccaaaac ccagggatca       780
     ttgtaggtcg caccacccct tcctttgccc ccggatttct acctcaccct ccataaccgt       840
     cccatctgcc tcactcccac cctcaagtac ctgggcctca ccacagatca ccctctcctg       900
     gaccccccac ctcgcaccat ccaagaaaaa gcccgctccc gcctccgcct cctcaaactc       960
     cttgttggcc gaacctgggg cctgaaccct tccaccatcc tctataccta caaatccctc      1020
     atccgcccca tcctctgcgt ctcccatcct gcctggatct ctgccccccc atccttctac      1080
     aagtccctgg agatcctgga acgccacgcc ctccgcctcg ccttccgtat cccttcctac      1140
     cccccatccc ccacgcggct cctctatgac ctcattccct tcccccgcct tgtccgcttc      1200
     attgagcacc ttcgtctccg tttcctctac cgtaaactgg atccccctca ccctattgtc      1260
     catcctctcc tcaccaatcc cggtccgttg ccgcgccatt accactgtat ccccctgctc      1320
     tccacttgtc caccctcctt accctttccc gtggcaattt ccgcaccctc cccctccctg      1380
     acgatgccct ccacccagac atctaccctt cgtaccagct ctgatccccc cttctcctcc      1440
     ccctcctctc tccttgatcc ccctatgagg gccccactcc cttcctccct cccccctccc      1500
     tactcctgcc agtccctccg gtatcccccc tcctcctcct tacagcttcc tggggcatcc      1560
     caccccctcc ttttccgtat ggccctgtgg cccctcctcc ctcctgcccc cccccacccg      1620
     atactcctcc tccgccccct ctcccccctc cacccctctt tcgctcctcc ccttgctcct      1680
     tccccatcct cattcactat attcattaac atatgcgtgt gaatcgtctg tgttccgtcg      1740
     gagtgaatat catcagttat ttttaacgaa actgcaacgg ccaccccgca gccgacgcct      1800
     gtgtatttta aatgtccgtg tgcatcagtg ctacagtgtt tgtgttactc cgtcatcgtc      1860
     gccatgtatg tttatacact cttcattcac tccattcaac gcagtattac cttcattttt      1920
     tcgccgtgtt atgtgttttg ttttcgctcc atttatgtac tccttgtatt tttgtatttc      1980
     ttccttattt tgtaattctg taggctgaag agcgccttaa gcgctgccag cccgccccat      2040
     caggggaatg aaatatcaat aaaggaaaaa aa                                    2072
//
ID   Jockey-1_BTa repbase;    DNA;    INV; 5444 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5444
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 703-703 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           2201..5002
FT                 /product="Jockey-1_BTa_2p"
FT                 /translation="MVSNQPTMDRFIVSTPRAQPSNLNPTRNQSIPIKNFS
FT                 IVTWNANGIIRRRVDVIQFLQDYNVDILLISETRMTKEMYLFIPNYIFYHA
FT                 LHPDNAAHAGAGLLIKRNIKHYLYDTIQTEMFQSVSVSINIENHDIIIASV
FT                 YIPPHHIPSQIDYANFLDRLGSRFLIAGDWNSKHTAWGSSKILKKGRNLYQ
FT                 ATRSIHANFASQGKPTHYPIDPLKTPDVIDFGIFKGITPTHIHTVLIDGEL
FT                 NSDHEPVLFHLAGTPISTKNPIRLCNRSTDWDSFRDYINDRINLSIYHQIE
FT                 TTDQLDAELHQLVEVIQNAAKQATYPTTQHIPAGFKTPHYLRQWIRDKRKA
FT                 RRKWQRSRDPVDKTNFNYIAKKVTTELINLKNQRLADHIKTLNATPQSEYS
FT                 LWRATSYLKRPPMHNAPLFNDRTRKWAKTDEQKATLLADHLSSVFKPNSLP
FT                 NATAEDVYCPLDDGKLLNPDYEIPLTSFGEVKKLIDRCKTKKAPGEDLIVG
FT                 LILKNLPDKALHKLVEIFNAILDFQYVPKLFKEAIIIVFHKNGKPTKHPSS
FT                 YRPISLLSSIAKLWERTYLPRLLKVINKENIIPDHQFGFRIKHATVEQLHR
FT                 VTSFIEKALEQKEYCAAAFLDVAQAFDRVSHKLLIRMLSSLIPAAHVKLLR
FT                 SYLTGRSFQVRVGETLSTRRQILAGVPQGSVLGPLLYLIFTSDIPKPTRDA
FT                 LLGKFADDTTYLAAHKSQEVAINILEDNLLNVETWKDNKDIAMNSKKTVFK
FT                 IFSNRPINTNHKINFCNTLIPISDLAKYLGLNLDTKLKWKPHIKIKRQECN
FT                 HKFKKLYWLLGNKSTLNNFNKLLIYKQIIRPTWAYGSQIWGCSAPSNIKIM
FT                 QTLQNKILRNIVSARWFERNSDIHRDLGMETVNDFISKVATRYENRLHSHP
FT                 NVEAIALLDNSSELRRLKRTKPWELASKAS"
FT   CDS           join(140..1849,1825..2205)
FT                 /product="Jockey-1_BTa_1p"
FT                 /translation="MASKQPTMPEFLNRTDDVAQLAQQQANESSVNQVPIT
FT                 SIEIPPNINDILIKANNFTSQKYAIDNPAITSNAIKNSKEIIETLSSTFKN
FT                 YIAQTKLENDNFRQQISQQLNEMMALKDKAEQDSATYKRQLETALREMRLN
FT                 SRSSDSKRQRTDKEPEQSPTLVDDNDNDIMEVQDTQIDYNNPSKEEEERMV
FT                 DAELEGWRVAVSRKSKQNKRKREDSDSQPESGKKNTPINIINSTQSIAYKP
FT                 VTLVPAAVRNAIPTKPQPPPPIKVTNPIDISQIKPIIQKLVPDTSKYTFKS
FT                 LQSMVKINFTNDEDHRKVTNAFNNHPEIFWYTHENKNSRDLRVMCRGLHPK
FT                 TEEQDIIDDLKSQNFNIVSASNIIRKKQPENGKGPLEKEPLYLHQLTFGNG
FT                 EDPERIFKIRAITNQIVKIEACKARPGILIQCRRCQGFNHTQKFCGKPAAC
FT                 VKCAGAHWSTECPIKGYNENPKCFNCKGSHVASSRNCPIKQQAASQRFSNI
FT                 NSSAGNQLTQSSPAIQRRANTATSTYAEATKTTSPHPATELNAILAAIQGI
FT                 GKRLDVIETKLSAHEAQLGSSSRSSIRKLIKMNSSLFYHPNMYKIFSKRVS
FT                 SLPEIIFLLLNIHVATFNRPLSLLFVYVIKLNNPLFSFCSQSDYAYGEPLI
FT                 RLSNERTINGMTFFNNGLPSAIIILNSRPTYILKILLITVNFYNDHYG"
XX
SQ   Sequence 5444 BP; 1892 A; 1195 C; 925 G; 1432 T; 0 other;
     gctgttccaa tctagaaact tcatcgagct gagctgcatt gctcatgctg tcatattgaa        60
     catttattga acgctttatc aattatgtga atatagtgtg ttggtttttg gtgcccacat       120
     cggtggtggt gcaagtgtaa tggcttccaa acaaccaaca atgcctgaat ttctcaatag       180
     aactgatgat gtggcgcaac ttgcgcaaca acaggctaat gaatctagtg taaatcaggt       240
     acctataact agtatagaga tacctcccaa cattaacgac atcttaatta aagctaataa       300
     ctttacttcc cagaagtatg caatagataa tccggctatt accagtaatg ctattaaaaa       360
     ctccaaagaa ataatagaaa cgctctcctc tacatttaag aactacattg cacaaactaa       420
     actagaaaat gacaattttc gtcaacaaat atcacaacaa cttaatgaaa tgatggccct       480
     aaaagataaa gcagaacagg attcagcaac ttataaacgc cagcttgaaa cagcccttag       540
     agaaatgaga ctaaactcaa gatcctctga tagcaagcgc cagcgcacag ataaagaacc       600
     tgaacagtca cctaccttag ttgatgataa tgataacgac atcatggaag ttcaagatac       660
     acaaatcgac tacaacaatc cttctaagga agaagaagaa cgcatggtcg acgcagagtt       720
     agaaggatgg cgagtagcag tctcgagaaa atccaaacag aacaaacgca agcgtgaaga       780
     ctcggactca caaccagaat ctggtaagaa aaacactcca ataaacatca taaatagtac       840
     ccaatctatt gcttataaac cagtaacact tgtaccagct gcggtaagga acgccattcc       900
     tactaaacca cagcctcctc ctccaataaa agtcacaaat ccaatagaca tttcgcaaat       960
     caaaccaata atccaaaaat tggttcccga tacgtcgaaa tatacattta aatctctcca      1020
     atcaatggtc aaaatcaatt ttacaaacga tgaagatcac agaaaagtaa ctaatgcatt      1080
     caacaaccat ccagagatat tctggtacac tcacgaaaac aaaaatagta gagatctaag      1140
     agtaatgtgt cgaggccttc accctaaaac ggaagaacaa gatattatag atgatctcaa      1200
     aagccaaaac ttcaatatag ttagtgcctc taatattatt aggaaaaagc aacctgaaaa      1260
     cggtaaaggc cctctagaaa aagaaccgtt atacctgcat caactcacgt tcggaaacgg      1320
     agaggatcca gaacgaattt ttaaaattag agctataaca aaccagatag ttaaaataga      1380
     agcatgtaaa gcaagaccgg gcatcctcat tcagtgcaga agatgtcagg gattcaatca      1440
     tactcaaaaa ttttgtggga aaccggctgc atgcgtcaaa tgtgccggag ctcattggtc      1500
     tactgaatgt ccaattaagg gttataatga aaatccgaag tgctttaact gtaaaggatc      1560
     tcatgtagct agttcgagaa actgtccaat taaacaacaa gcagccagtc aacgcttcag      1620
     caacatcaac tcttctgctg gaaatcaact aacacaaagt tcgcctgcaa ttcagagacg      1680
     agccaatact gctacatcca cttacgcaga ggcaactaaa actacctccc cgcacccggc      1740
     tacagaactc aacgccatac ttgcagctat tcaaggaatt gggaaaagat tagacgtcat      1800
     agaaacaaag ttatcagccc atgaagctca attaggaagc tcatcaagat gaactcctct      1860
     ctgttctatc atcccaatat gtacaaaatt ttctccaaaa gagtatccag cttacccgaa      1920
     atcatatttt tacttttaaa tattcacgtg gcaaccttta atagaccact atctttatta      1980
     ttcgtatatg taatcaaatt aaataatcca ttgtttagct tttgttcaca gagtgactac      2040
     gcttacggtg agccgcttat cagattgagc aatgaaagga ctattaatgg aatgactttc      2100
     ttcaataacg gtcttccaag cgcaataatt attcttaatt cacgcccaac ttatattcta      2160
     aaaattctat taatcacagt aaatttttac aacgatcatt atggttagca atcaaccaac      2220
     aatggaccga tttatagtct caaccccaag agcacaacct tcaaatctta atccgactcg      2280
     taatcaatct atcccaatta aaaacttttc catagtcaca tggaatgcga acggaatcat      2340
     aagacgccga gtagatgtaa tccaatttct ccaagattat aacgttgata tactcctaat      2400
     atcagaaaca agaatgacca aggaaatgta cttattcatt cctaattata ttttctatca      2460
     cgccttacac cctgataacg cggcacacgc gggagcggga ttactcataa aacgtaacat      2520
     taagcattat ttgtatgaca ctattcaaac ggaaatgttc cagtcggtgt cagtctcaat      2580
     caacatcgaa aaccacgata taatcatagc ctcagtttac ataccacctc accatattcc      2640
     gtcccaaata gactacgcaa atttccttga ccgtctaggt tccagattct taattgctgg      2700
     agattggaac tcaaaacaca cggcctgggg ctcatcaaag atattaaaaa aaggaagaaa      2760
     cctctatcag gcaaccagat ccattcatgc taactttgct tcacagggta aacctacaca      2820
     ttacccaata gatcccctaa aaacacctga tgttattgac tttggaatct tcaaaggtat      2880
     aacaccaact catatacaca ctgtattaat tgacggtgaa cttaattccg accatgaacc      2940
     tgtattgttt cacctagcag gaacacctat ttccactaaa aaccccataa gactttgtaa      3000
     tcgctcaacc gactgggact cattccgtga ctacattaat gatagaatca atttgtctat      3060
     ataccatcaa atcgaaacaa ctgatcaact agatgctgag cttcatcagc tcgttgaggt      3120
     tatccaaaat gcagcgaaac aagccaccta tccgacaact caacatattc cagctggctt      3180
     caaaacccca cattacctta gacaatggat tagagataaa cgaaaagcaa gaagaaagtg      3240
     gcaaagatct agagaccctg tcgataaaac aaatttcaac tacatagcaa aaaaagtaac      3300
     tacagaatta attaatctca aaaatcagag attagctgat catattaaaa ccctcaatgc      3360
     aacaccccaa tcggaatact ctctatggcg tgctacaagc tatttaaaaa gacctcctat      3420
     gcataatgcc ccccttttta acgatagaac aagaaaatgg gcaaaaacag atgaacaaaa      3480
     agccacccta ttagctgatc acttaagttc ggtttttaaa ccaaattccc tccctaatgc      3540
     cactgcagag gatgtatact gtcctctaga cgacggaaaa ctcctcaacc ccgattacga      3600
     aattccttta acatcctttg gtgaagttaa aaaacttatt gatcgttgta aaaccaaaaa      3660
     agccccaggg gaagacctca ttgtgggtct aattctcaaa aatctacccg ataaagcttt      3720
     acataaatta gtagaaatat tcaacgcaat tcttgatttc caatatgtac caaagctgtt      3780
     caaagaagca attatcattg tcttccataa aaatggcaaa cctacaaagc atccttcttc      3840
     ctaccgacct atatctcttt tatcatccat tgcaaaactc tgggagagaa catacctacc      3900
     tcgccttcta aaagtaatca acaaagaaaa cattataccc gaccatcaat ttggattcag      3960
     aataaaacac gctacagtag aacaactgca ccgagttact agctttattg aaaaagccct      4020
     agaacaaaaa gaatactgtg ctgcagcgtt cttagacgtt gcacaggcat tcgatagggt      4080
     ctcgcataaa ttattaatca gaatgctctc tagtttaatc ccagcagctc atgttaaatt      4140
     actacgatca tatttaactg gaagaagttt tcaagtgagg gttggagaga ccctctcaac      4200
     tcgccgccag atccttgcag gagtccctca aggatcagta cttggtcctc tactttattt      4260
     aatattcact tctgacattc ctaaacctac aagggatgct ttgctaggaa aatttgccga      4320
     tgacaccacc tacctggctg ctcataaatc acaggaagta gcgattaata ttttagaaga      4380
     caatcttcta aatgtagaaa cttggaaaga caataaagac attgcgatga attctaaaaa      4440
     gacagttttc aaaatttttt ctaatagacc aattaatact aatcacaaaa ttaatttctg      4500
     caatactctt attcccattt ctgatttagc caaatattta ggattaaact tagacaccaa      4560
     acttaaatgg aaaccacata taaaaataaa aagacaagaa tgcaaccata aatttaagaa      4620
     actttattgg cttttaggta ataaatcgac cttaaataac tttaacaaat tactaatata      4680
     caaacaaata attagaccca catgggcata tgggtcacaa atttgggggt gctctgcacc      4740
     ctcaaatata aaaataatgc aaactttgca aaataaaatt ttaagaaata ttgtgtcggc      4800
     taggtggttt gagagaaata gcgacatcca cagggacctg ggaatggaga cggttaacga      4860
     tttcatttct aaagtcgcta cgcgctacga gaaccgtctt cattctcatc ccaatgttga      4920
     agctatagct cttttggata actccagcga gctgagaaga cttaagagaa ccaagccttg      4980
     ggagcttgct tccaaggctt cgtagtatct agttgttcta gatccattgg ctgctgtggt      5040
     tggcgcctgg ctggtggggt tgcccgtcgt gcgcgggtgc ggtgcccctc ccgtcggagg      5100
     ggggtctctc ctccctttgc ttggtgacag tcagtgcaga cgagtaacgt ctgccgcgct      5160
     aaagtagtca ggttgacggc cggctgtcgt ccgggcattg ggggtggggg atccccggtt      5220
     gtatggaacg ggggctcgtc tttctccctg cgtgcggggg gttgcgctgc tcgctgggcg      5280
     tgagcttcag gagtcattct tacgagacct cggtctctat attatatgta agattaacta      5340
     ctctgttgtt aattcttttc tcttttaatt attagtagat gcaatgaatg taatatcctt      5400
     tgtgatagtt ttcaataaat ttattagaaa aaaaaaaaaa aaaa                       5444
//
ID   Jockey-1_CoFl repbase;    DNA;    INV; 5228 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5228
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2379-2379 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           240..1934
FT                 /product="Jockey-1_CoFl_1p"
FT                 /note="putative phosphodiesterase."
FT                 /translation="MSTVDNPQFQVSVTNSFDALLEETDSSSSEMSALNSA
FT                 SDRASASASDNSAQFPAVSDMTVSRPMDQRSLELKSRDPRVNRRNPQRERS
FT                 PLSRGDTPPEIAEELAEXRQRIEYLEKIASEYSVQLENSIQQIAKFFKISN
FT                 EEKDETIAAXYAKSPRTAENTPVKGPGLISPSPANRDPLNLLNPSTSEAKQ
FT                 PPPMPSPRPVENASANSTVKKPAXKRRRTKLVTNVSLSIPNSPTWS*RVSQ
FT                 SQAPPLSSSQAGKNAFDGHLEDQAQHDSEETSSAPKKKAPPPITILDQKLW
FT                 PRINKALIAENIPVRRAITTSEGTRVYPENVDSFRRIVHDLDEKKVEFTTH
FT                 QLHEDREMIVVIRGVNIGYTEAEILEMIQEKVPSARRVYRMTKGXRTWSLV
FT                 TVYLDASDAKSXDIYNLRSLGGTSVRVEQKRKSSDVPQCRRCQKFNHTAAY
FT                 CRAAFVCGFCSLNHATATCPKKDKDQVTPRCANCNGEHRAFYRGCPKIPQK
FT                 GAHAPKKSTAPPPPLLGEPPLGQQPKARTSFARGCHTRMWHPLNNTEQELL
FT                 PRLLCSTHPRPPRQSSTQ"
FT   CDS           1678..4728
FT                 /product="Jockey-1_CoFl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVSTAPSTGVVQKSPKKELTPXRKALPLLPPFWESHP
FT                 SDNSPRLEHHSPGDVIRECGILSTTPNRSSSPDSSAQHTPDHRDNPPLNND
FT                 PADSPRPKSVRSRGQQNSSTLDRDFTLLNWNANSITHKTTELTHILQTKDI
FT                 DIACITETHLDNTKTLYIPNYTVHRRDRREKSHGGVAILVRKGIRHRVIST
FT                 DAANCEAVGIEVHTTSSASIRIISLYSPPTDDPNLQCIIPLFDSNIPTIVA
FT                 GDLNAKHKSWGCKHENPKGRSLLKHLRNLNINIEVPSEPTHYPSSPDQDPD
FT                 ILDIFLTKNLTIPTEPRTSPDLPCNHNPVYLEIPRSLLTIPVTTSRIDWVH
FT                 LAYNLESSPFKCRPIRSQTELDIAVDEFTDELNRCTQEATTTTTAPQHTLK
FT                 LPRDLLRLIKEKKRVQKLWQKRRTPELKVHLNSLEREVKSKVFEFRNKEFN
FT                 KFIAEAESHPRNAWKVVKKLRNKRPSLPPLQQGNKLYSLDSDKAEIFADSL
FT                 QNQCSPNLSAEELAQEHARITHTVQQQVLDNPDFEHCTPFEIRGIIRSLKT
FT                 RKAPGSDGISNSVLKILPQKFITAICNITNAVMRLRYFPIAWKVATVICLP
FT                 KPGKPLSNPASHRPISLLSSPSKITESVILTRLNKHATENNILPDVQYGFR
FT                 ARHSAVHQLLRVTEDLSDSLIHKNFTAIAFLDVQQAFDRVWHEGLLYKLIQ
FT                 LGFPHYLIGTVKSYLSDRFIRVKVGDSLSDPRPITSGVPQGSKLSPTLFNI
FT                 FCHDLPQRENINTYVYADDVAVSCTSKQHSRCTTFLNEHIVTLHNWYSLWK
FT                 LVVNEAKTIAMLVSWKNPRKKLQKIKVNGVEIDWSYSAKYLGVTLDRRLTY
FT                 VRHINSTRGKAYGAFVQLKPFFNNKAVSQKTKLRTFNAIIKSISTYAIPTW
FT                 GAAKGNRLQGIQGPFMKILRSVLGIPWYIRNTQIIKEFNIVPPIQAAPVLA
FT                 SKIRASITDHPNPTIAALANLQPGRFDLIRRPCALAQNPEDPQYTLGLQSP
FT                 LLPSDASSPSP"
XX
SQ   Sequence 5228 BP; 1466 A; 1703 C; 1040 G; 1001 T; 18 other;
     cagtctcgct cgagcgctcg taccgaacgc acgctttctg cgcacgcccg ttacgcatcg        60
     ctcttactca gacttgagtt ctctctaaac ggcccttttc agggctacct atttctcttt       120
     ccgtaaacgc gacttagtcg cgccgcgcga ctgtgtttcc gctaaattat acacccgcgt       180
     acacgccgcc ctcaggggtg gcccaattgg ctagcccttc actagggcac agccaaaaaa       240
     tgagcactgt ggataatcca caatttcaag tcagtgtgac taactctttc gacgcgctgt       300
     tggaagaaac agactcatca tcttccgaga tgtccgcgct aaatagtgca agtgaccgtg       360
     caagtgccag tgcaagtgac aatagtgcac agttccccgc agtgtctgac atgacagtca       420
     gccggccaat ggaccagcga tccctcgagc tkaagagccg agacccccgc gtcaaccgac       480
     gcaaccccca gcgggaacgc agcccgctct cccgtggcga tacaccgccc gaaatcgccg       540
     aggaactcgc ggaacamagg cagcggatcg agtacctgga gaagatagcg agtgagtact       600
     cagtccagct ggaaaattcc atccagcaga ttgctaaatt cttcaaaatc tccaacgagg       660
     agaaggacga gactatcgcg gctmtctatg ctaagtcccc ccgcacagcg gaaaacaccc       720
     cggtaaaagg cccgggtctt atctctccgt cacccgcaaa ccgcgacccm ttaaatctsc       780
     taaacccctc cacttcggaa gcaaagcagc cccctcccat gcccagccct aggccagtgg       840
     aaaacgcctc cgcaaattcg accgtcaaga aacccgccsc aaaaagaagg cgcacaaagc       900
     tmgtgaccaa cgtgtcactc tcaattccga actctccgac atggagttga agagtctcgc       960
     aatcccaagc cccaccactc agctcctccc aggcagggaa aaacgcgttc gacggtcacc      1020
     tcgaggacca agctcaacat gactcggagg aaaccagcag cgcccccaaa aagaaggcac      1080
     ccccaccgat cacaatcttg gaccaaaaat tatggcccag gattaacaaa gccctcatmg      1140
     cggagaacat ccctgtccgc cgcgccatta cgacctccga aggtactcgc gtgtaccccg      1200
     agaacgtcga cagctttcga cgwatcgtcc acgaccttga cgagaaaaag gtcgagttca      1260
     ccacccatca gcttcacgag gatcgtgaaa tgatagtcgt catccgtgga gtcaacatcg      1320
     gctacacgga agcagaaatc ctggagatga tccaggaaaa agtaccatcc gcccgtcggg      1380
     tctatcgcat gaccaagggt gamcggacct ggtccctggt caccgtgtac ctggatgcgt      1440
     cggatgccaa atccmacgac atctacaacc tcaggtcact cgggggcact tctgtcagag      1500
     tggaacagaa gcgcaagtcg agcgacgtac cccaatgccg tcgctgccaa aaattcaacc      1560
     acacggcagc ctactgccgc gccgccttcg tctgtggttt ctgcagctta aaccacgcca      1620
     ccgcaacctg tccaaaaaag gacaaggacc aagtcacccc tcgctgtgca aactgcaatg      1680
     gtgagcaccg cgccttctac cggggttgtc caaaaatccc ccaaaaagga gctcacgccc      1740
     cmaagaaaag cactgcccct cctccccccc ttttgggaga gccacccctc ggacaacagc      1800
     ccaaggctcg aacatcattc gcccggggat gtcatacgcg aatgtggcat cctctcaaca      1860
     acaccgaaca ggagctcctc ccccgactcc tctgctcaac acacccccga ccaccgagac      1920
     aatcctccac tcaataatga ccctgctgac tcgcctcgac caaagagtgt ccggtctcga      1980
     gggcaacaga acagcagcac gctagacaga gactttacgc tactcaactg gaacgcgaac      2040
     agcatcacac acaaaacgac tgaactcaca cacatactcc agacaaaaga catcgacatt      2100
     gcatgcatca ctgaaacaca cctagacaac acaaaaacac tctacatacc aaactacacg      2160
     gtacacagac gtgacagacg cgaaaaatcc catggcggag tggctatcct tgtacgcaag      2220
     ggcatccgcc atcgagtcat aagtacggac gctgccaact gcgaagcagt cggcattgaa      2280
     gtacacacca cctcatctgc ctccatcagg atcatctccc tctattctcc tccaacggat      2340
     gatccaaacc tccaatgcat aatcccgctg tttgactcca acattcctac gatagttgct      2400
     ggtgatttaa acgccaagca caaatcgtgg ggatgcaaac acgaaaatcc taagggtcgt      2460
     tccctcctca aacacttgcg caacctcaac atcaacattg aggttccgag tgaaccgact      2520
     cactacccca gctcaccaga ccaagaccca gacatcttag acatattcct gacgaaaaac      2580
     ttgaccatcc ctacggaacc acgaacatcc ccagacctcc cttgcaacca taacccagtc      2640
     tacctagaga tcccaagatc ccttctcacc atacccgtca ccaccagccg catagactgg      2700
     gtccaccttg cgtataacct cgaatcctcc ccatttaaat gtcgtcccat caggtcccaa      2760
     acggaactcg acatagcagt agacgaattc actgacgaac tcaacagatg cacacaagaa      2820
     gccaccacaa caaccacagc tccccaacac acacttaaac tccctcgcga cctcctgcgt      2880
     ctcatcaagg agaagaaaag agtccagaaa ctctggcaaa aaaggagaac ccccgaactt      2940
     aaagttcatc ttaactccct tgaaagggaa gtcaaatcca aagtcttcga attccgaaac      3000
     aaggaattta acaaattcat agccgaggca gagtcccacc caagaaatgc ttggaaggtc      3060
     gttaaaaaac tccgtaacaa acggccttcc ctcccccccc ttcaacaagg gaacaaactc      3120
     tactcgctag attcggacaa agcagagatc tttgcagatt cgctgcaaaa tcaatgctcc      3180
     cccaacctta gcgctgaaga actagcgcag gaacacgcga ggatcaccca cacggtgcag      3240
     caacaggtcc ttgacaatcc agatttcgaa cactgcacac ccttcgaaat cagaggcatc      3300
     atccgatccc taaaaactcg aaaagcccct ggcagtgacg gtatctccaa tagcgtcctg      3360
     aaaatcctcc ctcaaaaatt catcacggcg atttgcaaca tcaccaacgc cgtgatgcgc      3420
     cttcgttatt tcccaattgc gtggaaggtg gctacggtca tctgcctccc gaagccggga      3480
     aaacccctca gcaaccccgc gagccacaga cccattagcc tactctcatc gcccagtaaa      3540
     atcactgaaa gcgtcattct cacccgccta aacaagcacg ccacggaaaa taacatcctt      3600
     ccagacgtgc agtacggttt tagagccaga cattcggcmg twcaccagct tctgagagtc      3660
     accgaagacc tctccgatag cctcatccac aaaaacttca ccgcgatagc ttttctagat      3720
     gtacagcagg ccttcgacag agtttggcac gaaggcctcc tgtacaagct tatwcagtta      3780
     ggttttccgc actacctcat mggcaccgtc aaatcttacc tctcggacag atttatccgc      3840
     gttaaagtag gcgactccct ctccgacccc cgtccaataa cctccggagt cccccaaggc      3900
     tccaaacttt cacccaccct tttcaacatt ttttgccacg acctgcccca gcgcgaaaac      3960
     atcaacacgt acgtctatgc agacgacgtc gcggtcagct gcacgtcaaa acaacactct      4020
     cggtgcacca cctttctaaa cgagcacatc gtcactctcc ataactggta tagtctttgg      4080
     aaactggtcg taaacgaggc aaagactata gccatgctcg tctcctggaa aaatccaagg      4140
     aagaaactgc agaagataaa ggtcaacgga gtagaaatcg actggagcta ctccgccaag      4200
     taccttggcg taacgctaga ccgtcgactc acgtacgttc ggcacatcaa cagcacccgc      4260
     ggtaaggcat atggagcctt cgtgcaacta aagcccttct tcaacaacaa agcmgtctcc      4320
     cagaagacca agctgcgcac cttcaacgcc atcatcaaga gcattagcac ctacgcgata      4380
     ccaacgtggg gcgctgcaaa gggaaaccga ctacagggca tccagggccc tttcatgaag      4440
     atactgaggt cggtcctggg cattccgtgg tacatcagga atacccagat tatcaaggag      4500
     tttaacatcg tccctccaat acaagcagcc cccgtccttg cgtctaaaat ccgcgcctcc      4560
     attacggacc acccaaaccc caccatcgcc gcactcgcga acctccaacc cggtcgcttc      4620
     gaccttataa gacgtccctg cgctctagca cagaaccccg aggaccctca atatactcta      4680
     ggtcttcaat ctcccctgct tccatcggat gcatcatctc catctccatg atctcgacga      4740
     aacgaacgcg acttcaattc gtgcgctccc ttcaggagca cccttctatc cgccgtatcc      4800
     tctacggcct caaccctata caacacttac actaatcaca agtacgcttc caaatacaca      4860
     atacccagcg gactcacaca tctacacaca cacatacaat aacacaaaat ttaagcttct      4920
     ctaactctat tccggcgcaa gccaagattc gagcttcgcc cagatgcgta agtgccccct      4980
     cctctcatct cttcgagagc gagtcggcct ccgaaattct ccgttatttt ccttcttctt      5040
     tcttctccta tgcccttttg tcttctaggg gagtggtcct cacggacctg tcccatgcgg      5100
     ggaggttagt ttttagtcgg taggcacacc gggtgaatcc gacactacca ccggattagc      5160
     tggggtgtct atgaagattt tcccctcccc gctccatcaa amaaaaaaaa aaaaaaaaaa      5220
     aaaaaaaa                                                               5228
//
ID   Jockey-1_CQ repbase;    DNA;    INV; 4312 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4312
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 112-112 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..1418
FT                 /product="Jockey-1_CQ_1p"
FT                 /translation="MTRRVPAQNAGNIALPAAQAGKKVGISKRKVEASTDG
FT                 QKPGISKRKVLLEVTSNSKKTKKSDGTVPMDEEEENSSSHEEQLLKNNKFA
FT                 GLPDEDQVAEAKENEVKQRKEKLPPFYVRQSAATIDFRAGLVELIKSGKVQ
FT                 GNIRLCQDGFKVLVQSRQHYQLVKDYLTENEAEYFTHDVVMDKPYKIVVRG
FT                 LYDMPVEELAAELKVLKLDVLAVHKMSRRNKDIKYRDQLYLLHLAKGSTTL
FT                 PELKAIRAVFNIIVSWERYRPVHRDVTQCFNCLGFGHGGKNCHLKRRCAKC
FT                 GTDAHITSQCIQDSLVKCLNCNGEHSSTDRKCPKRAEFVKIRQQASTKNQP
FT                 QRRRTPPALVEQNFPPLQPRRQVPNLAPLPLDPRKRAEMNHPRPGSSQEPR
FT                 PPPPGFSQEPRPTQEPAVEENGNDLYTSTELLNIFKQMSAALRGCKTKTQQ
FT                 IEVLTSFVIQYGS"
FT   CDS           1411..4062
FT                 /product="Jockey-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDRRSLKLLNWNACSIRRKNLELVDFLREKEIDVAAI
FT                 TETHLKPGEKVYLQNYKIATQLDRTTSGGGGVLVAVHRDLKPRRLPHFKLD
FT                 IIEAVGVEIPTSVGPVLFIAAYCPRQVNARDGSAAKLKSDIQKLTRRSAKY
FT                 IIAGDLNAKHEVWGNSRRNRNGVILHNDLQNGYYNVVSPDRPTRVARSGNH
FT                 SIIDFFITNMAENVAHPEVFEELSSDHYPVVVEVGASVTPQRQPTRKDYHN
FT                 VDWQQFQQVVDSNIDYDQHPETSADIDRSLEVIQQAINQAEAANVREVPVN
FT                 FKVTDIDVDTKHLIRLRNVYRRQYQRTGDYDKKISVNNLNKIIQDRLDNIR
FT                 NQEFSKHVSQLGNYSKPFWKLSKVLKNKPKPIPPLIVEDSXLITSEEKANA
FT                 LGLHFVSSHNLGASMTSRKETSVANSISTINDSTFEFPADSHVSGEEVKVA
FT                 VKQMKNMKAPGFDNIFNLVLKKQSDQFFQHLANIFNKCLQLGYFPTNWKLG
FT                 KVIPILKPQKDPTSPTSYRPISLLSSLSKLFEKVIYSRLLDFTNDNNIILN
FT                 EQFGFRKGHNTAHQLTRVTKIIKQNKLESKSTAMALLDVEKAFDNVWHDGL
FT                 IHKLYLYGFPMYLIKIIQHYLSERSFRVFLNGIASGLFNIDAGVPQGSILG
FT                 PLLYNIFTSDLPTLPGNGVLSLFADDTAVIYKGKITRYLVGRLQKGLDVLS
FT                 EYFGDWKIRINAAKTQTIIFPLSKSARFVPKDDVLIKMNDVSIPWSKEVVY
FT                 LGLILDSKLLFRQHVDKILNKCSILIRCLYPLINRKSKLSLKNKLAVYKQI
FT                 IYPVIEYAVPVWECCARTHKLKLQRVQNKVLKMVLNVPGWTRSSEVHELAE
FT                 VKMLDQKIQEKCLKFREKCAISEYPLIQGLV"
XX
SQ   Sequence 4312 BP; 1292 A; 913 C; 984 G; 1121 T; 2 other;
     cattgttatc cgagcattcg ttggtgaagg ttgtctgaat caacatgact cgtcgcgtcc        60
     cggcgcaaaa cgccggcaat attgccctac ctgcggctca agcaggcaaa aaagtgggaa       120
     tttccaaaag gaaggttgag gcctcaactg atggccaaaa accggggatt tccaaaagga       180
     aggtgctttt ggaagtgaca tcgaacagca aaaagacgaa aaagagcgac ggtactgtac       240
     cgatggatga ggaggaggag aactcttcgt cgcacgagga gcagctattg aagaacaaca       300
     agttcgctgg actgcctgac gaggaccagg tagcggaagc aaaggagaat gaagtgaaac       360
     agcgaaagga gaaactgcct cctttttatg tgcggcaatc agcagcaacg atcgactttc       420
     gagcggggct ggttgaactc atcaagtctg ggaaagtcca aggcaacatt cgtctgtgtc       480
     aggacggatt taaggtgctg gtgcaatcca ggcagcacta tcaactggtc aaggattact       540
     tgaccgaaaa cgaggcggag tactttaccc atgatgtcgt catggataag ccgtacaaaa       600
     tcgtcgtcag aggtctgtac gacatgccag tggaggaatt agctgccgag ctaaaagttt       660
     tgaaactgga tgtgttggcc gtgcacaaaa tgagccgacg caacaaagac atcaagtacc       720
     gtgaccagct ctacctgctg catttggcta agggatcgac gacgcttcct gagctgaagg       780
     caatccgagc ggttttcaac attatcgtgt cgtgggagcg ataccgacca gtgcatcgtg       840
     acgtcacaca atgcttcaac tgcctgggct tcgggcacgg aggtaagaac tgccacctga       900
     agcgtcgttg cgccaaatgt ggtaccgatg cgcacatcac atcccagtgc atccaagatt       960
     cgctggtgaa gtgcctcaac tgcaacggtg agcactcgtc aaccgaccga aagtgcccca      1020
     agagagctga gttcgtgaaa attcggcagc aagcatcgac gaagaatcag cctcagcgtc      1080
     gtagaactcc tccagccctg gtggagcaaa attttccacc tcttcaaccg cgacgccagg      1140
     tcccgaactt ggcaccgttg ccgttggatc ccaggaagag agctgagatg aatcatccac      1200
     ggccgggttc cagccaggag ccgagaccgc caccaccggg cttcagccag gagccaagac      1260
     caacccaaga accagcagtt gaggaaaatg gtaatgatct ttacacctca accgaactcc      1320
     tcaatatttt caaacagatg tccgctgcac tgcgtggatg caaaaccaag acccagcaga      1380
     ttgaagtgct gacctcgttc gtcatccagt atggatcgta ggtccctcaa gctgctgaat      1440
     tggaacgctt gctccattag gaggaagaat ttagagctgg tggattttct tcgcgagaag      1500
     gagatcgacg tagctgccat cacggaaact catctgaagc ccggtgaaaa agtttatctg      1560
     caaaactaca agatcgcgac gcagctcgat aggaccacct ctggaggagg aggtgtgctt      1620
     gtcgctgttc atcgtgatct caagccacgc cggctgccac acttcaagct ggacatcatc      1680
     gaggccgttg gggtggaaat tcccacttct gttggcccag tactcttcat tgctgcatac      1740
     tgcccacgtc aggtgaatgc cagagatggt tcagcagcaa aactgaagag cgatatccag      1800
     aagctgacac ggcggagcgc aaagtacatc atcgctggtg acctcaacgc gaagcatgaa      1860
     gtttggggca acagcaggag gaatcggaac ggagtgattc tgcacaacga tctgcaaaac      1920
     ggatactaca acgttgtgag tccggatcgt ccaacgaggg tggctcggtc tgggaatcac      1980
     tcaatcatcg acttcttcat taccaatatg gctgagaacg tggctcatcc tgaggtgttt      2040
     gaagagttga gttctgatca ctatccggtg gttgtggagg ttggagcttc cgttactccg      2100
     cagcggcaac caacccggaa agattaccac aacgttgact ggcagcagtt tcagcaagtg      2160
     gtmgacagca acatcgacta tgatcaacac ccggaaactt ctgctgatat tgatcgttcg      2220
     ctggaggtga tccagcaggc tatcaaccaa gcagaggctg ccaacgttcg ggaggttcct      2280
     gttaatttta aggtaactga tattgacgta gatactaaac acttgattag acttaggaat      2340
     gtttatagga gacaatatca acggactggg gactatgaca aaaagatttc agttaacaat      2400
     ttgaacaaaa tcatacaaga ccgacttgac aatatcagaa atcaagaatt ttcaaaacat      2460
     gtaagccagc ttgggaatta ttcaaaacca ttttggaaac tttcaaaagt tcttaaaaac      2520
     aaaccaaagc ctattcctcc tcttattgtt gaggattctc stttgattac atccgaggaa      2580
     aaggcaaatg cacttgggct tcattttgtt agttcacata atcttggcgc ttccatgacc      2640
     agccgtaaag aaacatcagt tgccaatagt atttcaacaa tcaatgactc tacctttgaa      2700
     tttcctgcag attcccatgt ttctggtgag gaagtcaaag ttgcagttaa acaaatgaaa      2760
     aatatgaaag ctccaggctt tgataacatt tttaatctag tgttgaaaaa acagagtgat      2820
     cagttctttc aacatctagc caatattttc aataaatgtt tgcaacttgg ttacttcccc      2880
     accaattgga aactgggcaa agtcatacca attttgaagc ctcaaaaaga tccaacatcg      2940
     ccaacaagtt atcgtcccat tagtcttttg agtagtctgt ccaaactctt tgagaaggtc      3000
     atctattcaa ggcttttgga ttttaccaac gataataata taattttgaa cgagcagttt      3060
     ggcttccgaa agggacataa tactgctcat cagcttacga gagtaactaa aatcatcaag      3120
     cagaacaagc ttgagtctaa atcaactgct atggctttgt tggatgttga gaaggctttt      3180
     gacaatgttt ggcatgatgg tttgatacat aaactgtatt tatacggttt tccaatgtat      3240
     cttatcaaaa ttatccagca ctatctttcg gagagatcgt tcagggtttt tctgaatggg      3300
     attgcttctg gattattcaa cattgatgct ggggttcccc aaggaagtat tcttggccca      3360
     cttctgtaca atatttttac atctgatttg cctactcttc ctggtaatgg tgtgttgtca      3420
     ctttttgctg atgacactgc cgttatttat aagggtaaaa taaccagata tttagttggc      3480
     cgtcttcaga agggtcttga cgttctttcc gaatactttg gcgactggaa aattcgcata      3540
     aatgcagcca aaactcaaac catcattttt ccactttcca aatcggcccg atttgtccca      3600
     aaggatgatg ttttgattaa aatgaatgat gtttcaatac cctggtcaaa ggaagttgtc      3660
     tatttaggtc tcatacttga ctcgaaacta ttgtttcggc agcatgtaga taaaatattg      3720
     aacaagtgca gcattctcat caggtgtttg tatcctttaa ttaacagaaa atcaaagcta      3780
     tctttgaaaa ataagctagc agtttacaaa caaataattt accccgttat tgagtatgca      3840
     gtacctgttt gggagtgttg cgctagaact cataaattga agctccagcg tgtccaaaac      3900
     aaggtactca aaatggtttt gaatgttcct ggctggacaa gatcaagtga ggttcatgaa      3960
     ttagcagaag taaaaatgtt ggatcagaag attcaagaaa aatgtttgaa attcagggaa      4020
     aaatgtgcta tatctgaata ccccttgatt caaggattgg tttagtttat ggtaagatta      4080
     agttagtttt aggttaggtt atgttttctt aatttttttt ttcctcattg tacctagtgt      4140
     tacaaaaatg ataaatcata tacttttaaa gttatgaaaa tgaacagtgt ttaaatcacg      4200
     aaaagcaaac taaagctgaa gagccacagc tgaccactta ttatgtaaac caaatgtaat      4260
     tattataaga aagattcaat aaagtatatt taattcaaaa aaaaaaaaaa aa              4312
//
ID   Jockey-1_DAn repbase;    DNA;    INV; 4038 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4038
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 382-382 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..1314
FT                 /product="Jockey-1_DAn_1p"
FT                 /translation="MNNDEDDTSAWSWQTVRPKPKAIKRQNQVSPILLKEK
FT                 IALAHAPSTXXNQYALLSDSTPNNGIEGESEALDLITEDTLDESAKPPPIF
FT                 LSEVSNIKGMLAYXETKMKKELFFYKVQRDGQVRITVKSIEEYRKLXKTLS
FT                 GDFVKFXTYQLKHKRAFRVVIKNXHFSTDXDLMKQDVESKGHTVRNISNIK
FT                 SRVTKEPLNLFFXDIEPNNKNLDIYKVKRIGNAVVNIEPPHKTKEIVQCYR
FT                 CQEFGHTKSYCSKTHRCVKCSLSHPSNICPKDKEQPPKCANCNEDHAASYK
FT                 GCKVYQELISKKIVSGRNHLKNTKDDNKGNDYATTQSFAPSNNSTQQPKDY
FT                 QSYAQAAAGKSISNTSLERIEQLLEKQFELTNNLLNMIMLLVNKLCK"
FT   CDS           1308..3563
FT                 /product="Jockey-1_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQINLNLGIWNANGLSNHXNEISLFLKTNEIDVMLIS
FT                 ETHFTSKSYFRIIGYDTVRADHHPSDRAHGGAAIIVKQGLKFQIMDSTREN
FT                 AMQAATIKIKCMHADVSITAIYLPPRFTIKELDFQNFFQGLGTKFIVGGDF
FT                 NAKHPWWGSRLTNPKGSELYKCIRNNNIHTLSTGKPTYWPSDSRKIPDLID
FT                 FVVFSGIPQSHMRVMESFDLDSDHSPIIATYSTIAHMLEKPYTVISASTDI
FT                 NAFKSYLDSAISLDISLKTGEEIDYAVELFTNTIHKASYRNTDHALNHQQS
FT                 NQLYLSIEIRQKVENKRKLRKRWQETHYPPDKRLYNKAASELSQLLSNLRN
FT                 ESLAAYLRNLDPNSCNNEHNLWRATKYLKRPAKRNTNIRNSNGNWCRSNTE
FT                 QAEAFAQHLQSVFQPNDINNSITETEVEKFLESPCQMSLPIKSIKYEEVVT
FT                 EIKXLNNKKAPGPDKINGITLKSLPTKCIQFITLIFNAILRLDHFPSQWKC
FT                 AEIIMILKPNKVETELTSYRPISLLTIFSKVFEKILLKRMLPILDEHSIIP
FT                 EYQFGFRRGHGTPEQCHRVINDIITAFENKKYCTAAFLDVQQAFDRVWHKG
FT                 LLYKIKKLLPAPYYLIIKSYLNKRCFYVQQKNDSSTLLLINAGVPQGSVLG
FT                 PILYTLYTADMPVTNNCTVATYADDTAVLATSSSRNEASELLQRELSLIED
FT                 WFLRWKIRINSLKSVQITFSLRPGNCPNVSLKARQFHKVAVSSIWACTSTA
FT                 D"
XX
SQ   Sequence 4038 BP; 1493 A; 828 C; 697 G; 1007 T; 13 other;
     cagtcgcgat ctaaaacact ccccgagtta agacgtgcct aaaatttaag cggaagctaa        60
     agctattmtt attcgattta ctacaacaaa aaacgaaaca aaacagtggt tgctgataag       120
     cactaaaaaa tcgttgttgt taacatgaac aacgacgaag acgacacatc ggcttggagc       180
     tggcagacag taagaccgaa gccgaaggca atcaagaggc aaaaccaagt gtctccgatc       240
     ctactaaagg aaaaaattgc cctggcccat gcacccagca cgagmwccaa tcaatacgcc       300
     ctcctaagcg acagcacgcc aaataatgga attgaaggcg aaagcgaagc actggacttg       360
     ataactgaag acaccttaga tgaatctgcc aagccgccac ctatattctt atctgaagtc       420
     agtaatataa aaggaatgct agcttatmtc gagacaaaaa tgaaaaaaga gcttttcttt       480
     tataaagttc aacgcgatgg tcaagtaaga attacggtta agtctattga agaatacagg       540
     aaacttgwta aaactctttc tggagatttt gtcaaatttm acacatatca gctcaaacat       600
     aagagggcat ttagagtagt tattaagaat ktgcacttct caacggatmt cgacttaatg       660
     aaacaagatg tggagtccaa aggccacact gttagaaaca ttagtaatat taaaagtcgt       720
     gtaaccaaag agccattgaa cttgttcttc ttwgacattg agcccaacaa taagaactta       780
     gatatataca aagttaaacg cattggtaac gcagttgtta atatagaacc cccccataaa       840
     accaaagaaa tcgtacagtg ctatcgttgc caggaatttg gacacacaaa gtcatactgt       900
     tccaaaactc acagatgtgt aaaatgctct cttagtcatc ccagtaacat ttgtccaaaa       960
     gacaaagaac aaccaccaaa atgtgccaac tgcaatgaag atcatgctgc tagttacaaa      1020
     gggtgtaaag tttatcagga acttatatca aaaaaaatag taagcggacg caaccaccta      1080
     aaaaacacca aagatgacaa taaaggaaat gactatgcta caactcaatc atttgctccg      1140
     tctaataatt cgactcaaca acccaaggat tatcaatcat acgctcaagc tgctgcagga      1200
     aaaagtatct caaacacgtc cctagaaaga atagaacagc ttctggagaa acaatttgaa      1260
     cttacgaata atttactcaa tatgataatg ttacttgtaa acaagctatg caaataaacc      1320
     taaacttagg aatatggaat gccaatgggc tttccaacca tktaaatgaa atatccttat      1380
     ttttaaaaac gaatgaaatt gacgtcatgc ttatctcaga aactcacttc actagcaaat      1440
     cttattttag aattattgga tacgatacag taagagctga tcatcatccg tcagatagag      1500
     ctcatggggg tgctgcaatt attgtcaagc agggccttaa gtttcaaatc atggacagta      1560
     ckagggaaaa cgcwatgcag gctgccacaa ttaagataaa atgtatgcac gcggatgtat      1620
     caataacagc gatttacctc cctcccagat tcacaataaa agagcttgat tttcaaaact      1680
     ttttccaagg actgggcaca aagtttattg taggaggcga cttcaatgcc aaacatccat      1740
     ggtggggttc cagactgact aacccgaagg gatcggagtt atacaaatgc atacgaaaca      1800
     ataatataca cactttgtca actggtaagc ctacatactg gccatctgat agtcggaaaa      1860
     tcccagactt gattgatttc gtagtattct ctggaattcc acaatcacat atgcgagtaa      1920
     tggaaagctt tgaccttgac tcagatcatt ctccaataat agctacttac agcacaatag      1980
     cccatatgtt ggaaaagccc tacacagtca tttcagcttc tacagacatt aacgcattca      2040
     agagctattt agactcagct ataagcctgg atatttcgtt aaaaacagga gaggagatag      2100
     actatgctgt ggagcttttc acaaacacaa ttcataaagc gagctacaga aacacggatc      2160
     atgctcttaa tcatcaacaa tcaaaccaat tgtacctgtc tatcgagatt cgacagaaag      2220
     tagaaaataa aagaaaactg cgtaaacggt ggcaagaaac tcactaccct cctgacaaaa      2280
     gattatacaa caaggctgca tctgagctta gtcaacttct gtcgaactta cgcaatgaat      2340
     ctctagctgc gtatctgaga aatttagatc ctaattcctg caacaacgaa cacaacctat      2400
     ggagggcgac taaataccta aagagaccag ctaaaagaaa cacgaatatt cgtaatagca      2460
     atggaaattg gtgtaggtct aataccgaac aagcggaagc atttgcacaa catctgcaat      2520
     ctgtcttcca gcccaacgat attaataatt ctataacaga gaccgaagta gaaaaatttc      2580
     ttgagtcacc ctgccaaatg agcttaccta taaaaagcat caaatatgaa gaagtcgtaa      2640
     cagaaatcaa agamttgaac aataaaaaag caccaggtcc tgataaaata aacggcatca      2700
     ccctaaaaag cttaccaaca aaatgcatac agtttatcac ccttatattc aacgcgattc      2760
     tcagattaga ccactttcca agtcaatgga aatgtgcaga gatcataatg atcctaaagc      2820
     caaacaaagt ggaaacagaa ttaacatcat atcgtcccat tagtctgctg acaatattct      2880
     cgaaagtgtt tgaaaaaata ctcctgaaga gaatgttgcc aattttggac gaacattcca      2940
     tcattcctga ataccaattc ggattcagga gaggccacgg gacccccgag cagtgccaca      3000
     gggtcattaa tgatataatt actgcatttg agaacaaaaa atactgcaca gctgcatttc      3060
     ttgacgttca acaagcgttt gatcgagtct ggcacaaagg tttattgtac aagataaaaa      3120
     aattgctacc tgctccgtat tacttaataa tcaaatcata tcttaataaa agatgctttt      3180
     acgtgcagca gaaaaacgat tcatcaacgt tacttctcat taatgcaggc gtcccacaag      3240
     gaagtgtatt gggaccaatc ctctacactc tatatacggc ggatatgcca gtcacaaaca      3300
     actgcactgt tgcaacatac gctgatgata cagccgtttt ggccacaagc tcatctagaa      3360
     atgaagcttc tgaacttctg cagcgtgagc taagcctaat tgaagactgg ttccttcgat      3420
     ggaaaattag aattaactcc ctaaaatctg tccaaataac cttttcattg agaccaggta      3480
     attgcccaaa tgtgtcactt aaggctcgcc aattccacaa agtagctgtg tcaagtatct      3540
     gggcttgcac ctcgaccgca gattaacgtg gaaaaatcac ataaaagcca aatgtcagca      3600
     gctcagactt aaacttgggg aactgctagc aactcaaata ttgagatact acagcgctac      3660
     cagtcaaaaa ctttgcgaca aattgtcaat gctccttttt atgtaactaa tgcaaatatc      3720
     cacaaggatc tcaatatccc aaccataaga gaagaaataa ataaaattag taaaaaatat      3780
     atcgacagac tccataatca tgaaaataat ttagccttaa gtctagtaga taacagctta      3840
     tcattaagaa gactaaaaag ataccacata ctagatctcc cagatagata aattcaatta      3900
     acagaaacga tgttgtatat aatagcaggg ttcactggaa aactgctatt cctgttattt      3960
     aatattaatt ataaaattta cttattgttt ataaaaacag attgtaaata aataaagagt      4020
     taaaaaaaaa aaaaaaaa                                                    4038
//
ID   Jockey-1_DAzt repbase;    DNA;    INV; 5542 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5542
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 870-870 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. Often seen in tandem.
XX
FH   Key           Location/Qualifiers
FT   CDS           353..2080
FT                 /product="Jockey-1_DAzt_1p"
FT                 /note="zinc finger."
FT                 /translation="MNQHDDDLEFDPNLPQITTTKSELPDEPGFLNFMKKE
FT                 CGPESFVIKRLSNDTVIVKCYNRKAQKLVEAILYGCPQNNQIVDHQPQPVK
FT                 QTKQFVSGSMPLKRQASPETTSITSSSKRMDQTKSPRTASGNLFAELDLEP
FT                 NEIIQLSNDEDMMEVTSPVQPTIHTIANQATAVPNEQKPPPFVLISVTNAV
FT                 ETINEIRKLIGMDSFITKSTATGGLRISCKDTASYLKLKNHYNSEQSSAQS
FT                 YTYQLKADKGYKIVIRDLHHSTDVKHIKEVLATKGHKVRYLCGLTRLVNNE
FT                 KVKINMFKVELETANNNPEVLQINNFDGQRVRIEVQRHSAPIVQCHRCQKI
FT                 GHSKNYCRSNFICVKCGGDHPSTTCTKPRNTPAKCANCGEDHAASYRGCQA
FT                 FKKAQKNQLASKSDLARANVLLQELHMPALPAPRSQSRQQQQRDQPNKAQN
FT                 KNQIQNQNQQPTKQVVSYADIARCPAVQTPERRSRSGRRDVAPVVKSTRER
FT                 SKSVAWKSTVNLASIGEKLDKLISLLLLTNKASNRAPSKQPQPRGLSTLED
FT                 KMEAMQRQLNFLISRLPAGSAANEQQNES"
FT   CDS           2061..4988
FT                 /product="Jockey-1_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNSKMNLRGQQIKIAFWNAAGIRGRLPELEAFLSEHK
FT                 IDILLVSETHLTNDMTIVIKGYSIYNTSHPTSTPRGGAMVAVKSSIPHTSL
FT                 PQFREPLVQVSSIVIKLASGPLTVASIYCPPSPANHWTKDKFKHIFNSMGR
FT                 KYIIAGDWNAKSQWWGNYRSCDRGRKILNSIQESDLNILATGSPTHYPSNR
FT                 RNRPSAIDFAIYRNIQHSHIVINQLHDMGSDHIMQIITLSDQPAPGKKRIV
FT                 LESYASIRSFQSYLDQHIHLDTELRSGEDVDDAVEILERNIMNAAEASMSD
FT                 NNSYRSPKFHDGWHLDCQTRVAIQAKRILTKIIRKGRFYNPLIKMLSNQLT
FT                 NRISKQIKQLKAKRMDSFLQSVDPADRYCMNKLWRLTSTLKRQPMANLPVK
FT                 KYFNPGDLPPDDPWCRSLEEKAEAFAEHLEHRFTPRITASPEDLQEIEGEL
FT                 LLHRGIDQTQVRPFVSDEIISEIKQLKNKKAPGFDSISNKMIKALPKSAIA
FT                 YLMLIFNASLEHGHFPTAWKCAKVSMILKPGKASEKLESYRPISLLAGFSK
FT                 ILERLILNRLYEVQAVERAIPNHQFGFRTEHSADQQISRVTQFILEGHENQ
FT                 KQVSAVFMDIQEAFDRVWHRGLLYKAKQLLPTSLFTLLTSYLENRNFKVVC
FT                 SNTSSRRRTIAAGVPQGSVLGPFLYSLYTADMPQPSAMAAANKTQMLATYA
FT                 DDTVYLVSTRQPIEAKRSMERLLASFLEWTKKWGITVNLQKTKHVLFSLSP
FT                 PQQRTEDSTPRLAGRTIKDQPSYQYLGVKLDRKLNFVSHIAATVGKAKNRI
FT                 RNLDWIIGRNSKLPIRIKIMLYKQMIEPIWQYAMPVWGPLTSEIQMNRLQV
FT                 VQNTVLRGIINAPRYTRNKDIIANLQIQTVEEACNELSKRFYEKLSRHSNR
FT                 LAINMALYPYVPRRLARSRQRYATIMAQHNQNTSSSNLTEVQRRALMARRE
FT                 SFQANPFSTPNSSSSPVTTTP"
XX
SQ   Sequence 5542 BP; 1923 A; 1298 C; 1097 G; 1224 T; 0 other;
     ccagaaataa gactggaaaa cccagaaaaa tcaaaaaagt gcctaaaaac cagaaaaaag        60
     actggaaaaa gaaccagaga aatcaaaaaa agtgcaaaaa aaaaaatcag aaaagactga       120
     accagaaaag tgcaaaaaac cagaaaaatc aaaaaagtgc aaaaaaccag aaaagactga       180
     acgagaaaaa tcaaaaaagt gccagaaaaa tcaaaaaagt acaaaaaaaa aaaacccgaa       240
     aagactgaac cagaaaaaac taaaaagtga atacgcatag ccgcttcatt gcgcgctgtg       300
     ttttgaaata aaaaaggaaa tagaaaattg tccctacatt ttcatttcca ccatgaatca       360
     gcacgatgac gacttggagt tcgaccctaa tctaccgcaa atcaccacta ctaagtcaga       420
     gttaccagat gaaccaggtt ttttaaattt catgaaaaag gagtgtggac ctgagtcatt       480
     tgtaataaaa cgtctctcaa atgacaccgt catcgtcaaa tgttacaatc gcaaggccca       540
     aaaacttgtg gaagcaattt tgtatggttg tcctcaaaac aaccaaatcg tggatcatca       600
     gccacagcca gtaaagcaaa caaaacagtt tgtttcgggc tccatgcccc taaaacgtca       660
     agcgtctcct gagacaacca gcatcaccag ttcttcaaag cgaatggatc aaacaaaatc       720
     accccggaca gcctctggca acctttttgc cgagctcgac ttggagccaa atgagatcat       780
     ccagctaagt aatgatgaag atatgatgga ggttacttca cccgtgcagc caacaattca       840
     caccatcgca aatcaagcca ccgctgttcc aaatgagcaa aaaccgccgc cattcgtgct       900
     catcagcgtt acaaatgctg tagaaactat caacgaaatc agaaaactaa ttggtatgga       960
     ttctttcatc actaaatcaa ctgcaactgg cggtctccgc atcagctgta aggatacggc      1020
     atcttatctc aaacttaaaa atcactacaa tagcgagcag tcgtcagccc aaagttacac      1080
     ataccaactg aaagctgaca aaggctacaa gatagtgata agggacctgc atcactcaac      1140
     cgacgtgaaa catatcaagg aagtgctcgc cactaagggt cacaaggtca ggtatttgtg      1200
     cggattaact cgattggtca ataatgaaaa agtcaaaatt aatatgttca aagtagaatt      1260
     agaaacggct aataataacc ctgaagttct tcaaataaat aattttgatg gacaacgggt      1320
     gagaatagag gtacagaggc actctgcccc aatagtgcag tgtcacaggt gccaaaaaat      1380
     cggccattca aaaaattatt gcagaagcaa ttttatatgt gtcaaatgcg gaggcgacca      1440
     tccgtccaca acttgtacca aaccgagaaa cacaccggca aaatgcgcaa actgtggtga      1500
     ggaccacgca gcaagttaca gaggctgcca agcttttaaa aaggctcaga aaaatcagct      1560
     cgcatcaaaa tctgacctag cccgtgctaa tgttctgctt caagaattac atatgccagc      1620
     ccttcctgct ccaagaagtc agagtcgtca acaacaacaa cgggatcagc caaacaaagc      1680
     tcaaaataaa aatcaaattc aaaatcagaa tcaacagccc accaaacaag tagtcagcta      1740
     tgcggacata gctcgatgtc cggcggtcca gacgcctgaa aggagatcca ggtcaggtcg      1800
     aagggacgtg gcacccgtgg taaaatctac aagggaacgc agcaagagcg tagcttggaa      1860
     atcaaccgtc aatctggcct ccataggtga gaagttggat aaactaatat cgctgttact      1920
     attaacaaac aaagccagca acagagctcc ctctaagcaa ccccaacccc gaggtctctc      1980
     cactttggag gacaagatgg aggccatgca gcgccaatta aatttcttaa tatcacgcct      2040
     ccctgctggg tccgcagcga atgaacagca aaatgaatct tagaggacaa caaataaaaa      2100
     tagctttctg gaacgcagca ggtatcagag gtagactgcc ggagctggag gccttcctct      2160
     ccgagcataa aatagatatc ctgctggttt cagaaacgca cctcacaaac gacatgacaa      2220
     tagtaatcaa aggatatagc atatataaca cttctcatcc cacaagcaca cctcgcgggg      2280
     gcgcaatggt agcagtcaag agtagcattc ctcacacatc cttgccgcag tttagagagc      2340
     cgctggttca agtgtcgtca atagtaatca agttagcctc tgggccgcta actgttgctt      2400
     ccatttactg ccccccttca ccagcgaatc attggacgaa agacaaattt aagcatattt      2460
     ttaactccat gggtcggaaa tacataatag ccggcgactg gaatgctaag agccagtggt      2520
     ggggaaacta tagatcctgc gacaggggta gaaaaatttt gaattctatc caagaaagcg      2580
     atctaaatat cctggccact ggatcaccca cgcactaccc gtcgaatcga agaaatcgcc      2640
     cgtctgcaat cgactttgca atttatagaa atattcagca cagccacata gtgattaacc      2700
     aactacacga catgggctcg gaccacataa tgcaaataat aactctctcg gaccaaccag      2760
     cacctggaaa gaaaaggata gtactagaaa gctacgccag cattcgctcc ttccaaagct      2820
     accttgacca acacatacat ctggatacgg agcttagaag tggtgaggat gttgacgacg      2880
     cagtcgaaat actggaaaga aatataatga atgcagctga agcctccatg agtgacaaca      2940
     actcataccg ctcacctaaa ttccacgacg gctggcacct agattgtcag acgcgagttg      3000
     caatacaggc aaaaagaata ttgacaaaaa ttattcgcaa aggacggttc tacaatccgt      3060
     tgataaaaat gctttccaac caattgacca accgtatcag caagcaaatt aaacaactta      3120
     aagcaaagcg gatggattcc tttcttcaaa gcgtcgaccc agctgaccgg tattgtatga      3180
     acaaactatg gagattaaca agtacgttaa aaaggcaacc catggcaaat ctaccagtca      3240
     aaaaatactt caacccagga gaccttccgc cagatgaccc atggtgcaga tcattagagg      3300
     agaaagctga ggcttttgct gagcatctag agcacagatt cacccccagg atcacagcaa      3360
     gcccagaaga cttacaagaa atagaaggtg agttgctgct gcatagaggc attgaccaaa      3420
     ctcaagtcag gccctttgtc agtgacgaaa taatatccga aattaaacaa ttaaagaaca      3480
     aaaaggctcc aggatttgac tccatctcta ataaaatgat aaaggctcta ccaaaatccg      3540
     ccattgcata cctaatgtta atcttcaacg cgtctctgga gcatgggcat tttcccactg      3600
     cgtggaaatg tgccaaagtg tcaatgattt tgaagccagg aaaagcctcg gagaagcttg      3660
     agtcatacag accaatcagc cttctggctg gattttctaa aattttggag cgactcatcc      3720
     taaataggct ttacgaagta caagcggtag aaagagccat cccaaaccat cagttcggct      3780
     tcaggactga gcactctgcg gaccaacaaa taagccgagt aactcaattc atcctggagg      3840
     gtcatgaaaa tcaaaaacaa gtatcagcag tgttcatgga tatccaggag gccttcgaca      3900
     gagtgtggca tcgagggctc ctgtacaagg ccaaacagtt gctacctact tcgctattca      3960
     ctctattaac cagctacctt gagaacagga acttcaaagt cgtctgtagc aacacatctt      4020
     caagaagaag aaccatagca gccggagttc ctcaaggcag cgtccttggc cctttcctct      4080
     acagcctata tactgcagac atgccgcaac cctctgcaat ggctgcagcc aacaaaacgc      4140
     aaatgctggc cacttatgca gacgacacag tatacctggt gtctacacgg cagcctattg      4200
     aggctaaacg atcaatggaa aggctcctcg caagcttctt ggaatggaca aaaaagtggg      4260
     gaatcactgt aaacctgcag aagacgaagc acgttctctt ttcgctatct ccaccgcagc      4320
     agaggactga ggactcaact ccaagactgg caggcaggac aatcaaggat caaccatcat      4380
     accagtacct tggtgttaaa ttggatagga agttaaactt tgtaagccac attgcagcaa      4440
     cagtaggaaa ggccaaaaat cgtattagaa atcttgactg gataatagga agaaacagca      4500
     agcttccaat ccgaattaag ataatgctct acaagcaaat gattgaaccc atatggcaat      4560
     atgccatgcc tgtctggggt ccgctcacat ccgaaataca aatgaacaga ctgcaagttg      4620
     ttcaaaacac ggtgctgaga ggaataataa atgccccacg ttatacacga aacaaagaca      4680
     taattgcaaa cctgcagatt caaacggtag aggaagcatg caacgagtta agcaagaggt      4740
     tctatgaaaa actatctcgt cacagcaatc ggctagccat caacatggct ctttatcctt      4800
     atgtgccacg tcggttagcc cgatcgaggc aacgttacgc cacaattatg gcacaacaca      4860
     atcagaacac cagcagcagt aacctgactg aagtccagcg gagggctctc atggcacgcc      4920
     gagagagttt ccaggcaaat cctttttcaa cgccaaactc ttccagcagc cctgtaacga      4980
     cgacgcctta aactatgcca cagatatttt ctgtatctga ctaattccca actggttcta      5040
     gcagtgtgtg ctatgcaaca gatatctcct gcgtctgaat aattcccaag tggttctagc      5100
     agtgtgccta tggagtggcg gctgttttgc cctttccaat tatccctttt cggccttacg      5160
     gcaaaggaaa aagtaaatac ctgtcagcct taacaagctt aaatgcctag cgttgacaac      5220
     gttgttaaac aaatttttta cttagccaac tttgttctga caattttgac aactttgcaa      5280
     aacaaattta tttaaaaatt actcaaccaa tattctgcca cttttgacaa aatttttagc      5340
     caattttgta atcaatattc tgccactttt gacaacttta taaaacaaaa ttttgtatta      5400
     ctcaatcaat gttctgccat ctacagtagt agttggcgtg aaaaaatttg tataatatgc      5460
     tttaaagtat agacaaataa aacggttctc tcctcattgt tatgtagagg gaatgccaat      5520
     aaatacaaaa aaaaaaaaaa aa                                               5542
//
ID   Jockey-1_DBi repbase;    DNA;    INV; 2164 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon from the Drosophila biarmipes
DE   genome.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2164
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 935-935 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It is likely 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1974
FT                 /product="Jockey-1_DBi_1p"
FT                 /translation="MANTRETMLLGEALRKAVMDEVIPGELTLAKNLATSG
FT                 KLNSYGIAVSSSNAACITSTLTTTHSPIYTYTTSSPSICSGMCSTPMPPKA
FT                 LSTSIDFPPLPGLNESDSPRWQKIQSQKRKGSSNSPISQRKRADIRNLEPS
FT                 DPVSANRFETLSVDDDEMDCNSVDEPSTSAAAAAYRSHTASKAKDSNAHNK
FT                 NANVQSKTDSSTVKSASTGSPKPPPIVLMDVTNVNELLIAIEEVTNLENVE
FT                 IKSSVGSTHRIYTKDANTYRAVVRQLNSLKIEFHCYQLKDEKPFRVVVRGL
FT                 HHSQLHHKIKEELLRQGHKVLSIYNPKSNKSGEQMNLFFINVEKNLNNKDI
FT                 LQLRSLCRQRVRFEVARKAQDIVQCRRCQSFGHTARYCYRPFICVSCGDYH
FT                 KSSDCPRSKEAPATCTHCGENHPANFRGCKSYQKLLKMNENVQKTPKVSIN
FT                 NNSTPKHYENGVSYAQIARNANPITEKQNKRPGNLTNRLQDAIQQQHHYGA
FT                 KNHAHFFPDVSQQQNAQESKLEMAVASLSKAIEGLYAMQAQMLKMLVAINA
FT                 QLTQCPK"
XX
SQ   Sequence 2164 BP; 748 A; 518 C; 422 G; 476 T; 0 other;
     cagtaggcca tcaactcttt gacaagttgt gtcgtgggga aaaaaaaaaa aaaaaacaaa        60
     gtgcgtgctt acgcgttatt attttgttat ctattcttcg tgtgctaata atagcacaga       120
     tcataaaaat tcggacgctg tctagcgcag tgtcggcagt gggacaacaa caacaacata       180
     agtgtagtgc gacaagactg catttgtgcc cgctagggca tcgctgttcc cctcacactg       240
     cgcgcagccg tacaagaggg gcaataaaag cagtgattga cttacattcg actttgcata       300
     aaatcgagag aaatggcaaa taccagagaa acaatgcttc tgggcgaagc tctgagaaaa       360
     gccgtcatgg acgaggtgat tccaggagag ttaaccctgg caaaaaatct ggccactagc       420
     ggcaagctta actcatatgg tatagcagta tcaagcagta atgcagcctg tatcaccagt       480
     actctgacaa caactcacag tccaatatat acctacacta catcatcacc cagcatatgc       540
     agtggcatgt gctcaacgcc tatgcctcct aaagcattaa gcacttctat agacttcccc       600
     cctctaccgg gcctcaatga atctgattca cccagatggc aaaaaatcca gagccagaag       660
     aggaaggggt catcgaactc accaataagt caacgaaaac gtgccgatat tagaaattta       720
     gaacccagtg accctgtgtc agcaaacagg ttcgaaacac tatcagttga tgacgatgag       780
     atggactgca atagtgtgga cgaaccatcg actagcgctg cagcagcggc ttaccgttct       840
     cacaccgctt ctaaggctaa agacagcaat gcacataaca agaacgcaaa cgtacaaagt       900
     aaaactgatt catctacggt aaaatctgct tctactggta gtccaaaacc accaccaatc       960
     gttcttatgg acgtgacaaa cgtgaacgaa cttcttatcg ctatcgagga agttacaaat      1020
     cttgaaaatg ttgaaatcaa atcctctgtg ggctccactc acagaatcta caccaaagac      1080
     gcaaacacct acagggctgt agtacgacaa ctaaattccc tgaaaattga attccattgc      1140
     tatcaattga aagacgagaa accattcaga gttgttgtgc gaggattaca ccattcacag      1200
     ctccatcata aaatcaaaga ggaattactc agacaggggc ataaagttct atcaatatat      1260
     aacccaaaaa gcaacaagag cggtgaacag atgaacctct tcttcattaa tgtagaaaag      1320
     aatctaaata acaaagatat actccaacta cgatctctat gtcgccaacg cgtccgtttt      1380
     gaagtagcca gaaaagcaca agacatagtg caatgtcgga gatgccaatc gtttggtcat      1440
     actgcaagat attgctacag accttttatc tgtgtctctt gcggtgacta ccataaatca      1500
     tcagattgtc ccagaagcaa agaagcacca gcaacttgca ctcactgtgg tgaaaatcac      1560
     ccagctaact tccgtggctg caaatcctat caaaaattgc tcaaaatgaa cgaaaatgta      1620
     cagaaaaccc caaaagtgag cataaacaat aactctacac ccaaacatta tgaaaatgga      1680
     gtttcttatg ctcaaatagc cagaaatgca aatccaatca cggaaaaaca aaacaaacga      1740
     ccaggaaacc taacaaatag gctacaggac gccattcaac agcaacatca ctacggtgca      1800
     aaaaatcatg cgcacttttt cccagatgtg tcacaacagc aaaatgcaca agaatctaaa      1860
     ctagaaatgg cagttgcatc gctctcaaaa gctatcgagg gtctatacgc catgcaagcc      1920
     cagatgctga agatgctggt tgcaattaac gcgcaactta cacaatgtcc caaataaaaa      1980
     ttctcacctg gaacacgcga ggtgctgccg gcaaaatgac ggaaatcggc caccttgcgg      2040
     agagagagaa tattgacatt ctccttctca ctgaaacgaa gacatccaac cttcaactat      2100
     ttggatatga agtctacact tcaaatctac ctgacggcag ccacaggggt ggagctgcaa      2160
     tcct                                                                   2164
//
ID   Jockey-1_DBp repbase;    DNA;    INV; 3806 BP.
XX
AC   .
XX
DT   18-DEC-2011 (Rel. 17.05, Created)
DT   18-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3806
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 709-709 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           456..878
FT                 /product="Jockey-1_DBp_1p"
FT                 /translation="MNNQCLCANCGENHPAGFKGCKVRMELSRKLKSGVRL
FT                 SNPTNTRTNESRHGQLFSMSATRDGVSYADMARNNLPSSTSAAAPQSAARI
FT                 PGGDRNPNRSLSTLEKAIVDINTRLDQLFKLVMETIESNKAFRDLVQVLIS
FT                 RK"
FT   CDS           878..3574
FT                 /product="Jockey-1_DBp_2p"
FT                 /translation="MTLSKIKIGLWNARGIVQKIEELRLFLIDTSIDIMLI
FT                 TETHMRPGLNFYIPGYDQYFANHPSNTAKGGSAILIKTGIIHTQSEPTTRT
FT                 DLQLACVDIQTNGGLLKIASLYLPPSEPWTKHDFDQLLVSLGPKFLAGGDF
FT                 NAKHQWWGNLRSCCRGKRLQEAIVSSSSQVLATGEPTFYSSNTRLTPTALD
FT                 FFIVNGVPLNKLAIETKYELSSDHLAIVATLSQRPQCKAKKKSILPPGSSV
FT                 EKFKESLDRSINLNAVINHPDDLEAAVAAFMENIHTAATAATPNQSHLSNH
FT                 NSSNLLPQNALLLIRLRRRVRRQYTRTGDIRFHRVYKRLSNRLSKVLTKNK
FT                 QDHIDQMLENASPDASTNYSLWKLTSRFKRQVIPKAPLRNPAGGWCRSSQQ
FT                 KADIFADNLENRFKPLDLAPMENRMFVETQLDRPFQMALPCKPVTLEEVKA
FT                 QIGKLKNKKAPGEDLLDNKTLKILPIKALLFIVLLFNSVLRLSHYPRAWKN
FT                 AIITMIPKPGKQPTEVDAYRPISLLPALGKMMERVILNRILALERVSRAIP
FT                 KWQFGFRKSHGTPEQLHRVVNFALEAMENKMYAVAVFMDIQQAFDRVWHDG
FT                 LLSKLKNLLTPQLFLLVQSFLSERKFSVVVDGEKSSKRPISAGVPQGSVLG
FT                 PTLYSLYTSDMPDSWACTEVDDGNMLIATYADDTAVMVRSPSIEIATLGLQ
FT                 EYVTRFEKWTTDWSIGINCSKCACVTFSTRPKNCPGISMLGSVLRHEAYYK
FT                 YLGVILDRGLNFQRHTTMIKQAVLSKAASMSWLLSPRNKLSLSNKVRIYKS
FT                 ILSPIWKYALQVYGIASKSNLKKIRVAQSKIVRSICNAPWFMRTRDIERDL
FT                 KIPKIGDVIRIHSEKYHERLGSHPNSLAKRLTWRPKKKKIKKIPST"
XX
SQ   Sequence 3806 BP; 1218 A; 878 C; 803 G; 907 T; 0 other;
     aggtggttcg taacctgact gctttaaatt gcgagttttg gcatcatcaa ctccgtgagg        60
     acaagccatt taagctggtg ctaaggaaca tacattccac ggttccaaag gaggaaatcg       120
     aacgttgctt cacggacaaa ggtttcgagg ttgtgaatat ctactgtcca agaaagcctg       180
     gcagtcgcgg cactacggcc gacgttaatg ttgatgatag gcaaaatcta ttttttgtca       240
     atctcaagaa gactacgaat gtcgccgagt cgcttaaaat taagcaaatc gggaggcaca       300
     gagtaacagt ggaaaaggct acccgaaaca aggacctcgt ccaatgtttt aaatgccaaa       360
     attttgggca cactcaaaat tgctgcttca taaagcctgt gtgtgggaat tgtgccggag       420
     atcatcctac taactccaaa tcgtgcgagg caatcatgaa caaccaatgt ttgtgtgcaa       480
     actgcggtga aaatcaccct gcaggtttta aaggctgcaa agttaggatg gaactaagca       540
     ggaaacttaa atctggagta aggctaagca acccaacaaa caccaggacc aacgaaagcc       600
     gacacggaca actattctcc atgtcagcta ccagagacgg cgtttcttat gcagacatgg       660
     caaggaataa cctcccgagc agtaccagcg ccgcagctcc gcagtctgcc gcacgtatac       720
     caggaggcga ccgcaacccc aacaggagtt tgtctactct ggaaaaggca atcgtcgata       780
     taaacactag gctggatcaa ctcttcaaat tagtcatgga aacgatagag tcgaacaagg       840
     cttttcgcga cctagttcag gttttaattt ctaggaaatg acattgtcaa aaataaaaat       900
     cggattatgg aatgcaagag gtatagtaca gaaaattgaa gaacttcgtc ttttccttat       960
     tgatacctca atagatataa tgctcattac cgagacgcac atgcgtcccg gtcttaactt      1020
     ttacattcct ggttatgacc aatactttgc caatcaccct agcaacaccg ctaaaggcgg      1080
     ctctgctatc cttatcaaga ccggcattat ccatacgcag agtgagccca cgacgagaac      1140
     agacttacag ctagcttgcg ttgatattca aacaaatgga ggtctactta aaatagcttc      1200
     cttgtatctt ccgcccagcg agccttggac aaaacacgat tttgaccagc tactagtctc      1260
     tctaggtcca aaatttttag ctggaggtga ctttaatgcc aagcatcaat ggtggggaaa      1320
     tttaaggtcc tgttgccggg gaaagcgtct ccaagaggcc atagtttcaa gctcaagtca      1380
     agttctagct actggggaac ctacttttta ttcttcaaat accaggctca caccaaccgc      1440
     cctggacttc ttcatcgtaa atggggtacc actcaacaaa cttgcgatcg aaaccaaata      1500
     cgagctgtcc tcggatcatt tggccatcgt cgcaacgcta agccaaagac cgcaatgcaa      1560
     ggccaaaaag aaatcaatac tcccgcccgg ctcctctgtt gaaaagttta aggagtccct      1620
     ggacagaagc attaacctca acgcggtcat caaccatcca gacgatcttg aagctgcggt      1680
     ggcagccttc atggaaaata tacacactgc tgcgacagct gctaccccga accaaagtca      1740
     cctttcgaat cacaatagca gcaatctgct cccacaaaat gctctacttc tcatacggct      1800
     tagaagaaga gtccgtcgac aatacacaag aacaggagat attcgcttcc acagggttta      1860
     taaaagactg tcaaaccggc taagcaaagt cctgaccaag aacaagcaag accatataga      1920
     ccagatgttg gaaaatgcga gtccagatgc atctaccaat tactccttat ggaaactcac      1980
     aagtcgattt aagagacagg tcatcccaaa ggctccactc agaaatcccg ctggcggttg      2040
     gtgtaggtca agtcagcaga aggcggatat ctttgctgat aatctggaaa acagatttaa      2100
     gccgctagat ctagctccga tggaaaaccg aatgtttgta gaaacacaac tggacagacc      2160
     atttcaaatg gctcttccct gcaagcctgt aaccctggaa gaagtcaagg cacagatcgg      2220
     aaagctcaaa aacaaaaaag cgccaggaga ggaccttcta gacaacaaaa cgctgaagat      2280
     tcttcccatc aaggcactac tattcatagt cctattgttt aacagcgtcc taaggctgag      2340
     tcattacccg agagcatgga agaatgctat catcacgatg atacccaagc ctggaaagca      2400
     acccactgag gtagatgcat acaggccaat tagtctctta cctgcattgg gtaaaatgat      2460
     ggaaagagtc attctgaatc gcatccttgc actagaaagg gtaagcagag ctattccaaa      2520
     gtggcagttt ggctttcgaa agagtcatgg cacacctgaa cagctacatc gcgtggtcaa      2580
     tttcgctctg gaagccatgg aaaacaaaat gtatgcagtt gctgtgttca tggacattca      2640
     acaagccttt gatagggtat ggcacgatgg tcttctaagc aagctgaaaa acctcctaac      2700
     gcctcagctc tttctcctcg ttcagagctt cttatcggag agaaaattca gtgtggttgt      2760
     cgatggagaa aagtcgtcaa aacgcccaat ctcagccggt gtaccccaag gtagtgtact      2820
     aggtccgacg ctttactctc tgtacacatc agatatgcca gactcctggg cctgtaccga      2880
     agtcgacgat ggtaacatgc tgatcgcaac gtacgctgac gacactgctg ttatggtcag      2940
     aagtccaagc atagaaatcg caaccttggg cctgcaagag tacgtgacac gttttgaaaa      3000
     gtggactaca gattggagca taggcatcaa ctgcagcaaa tgtgcttgtg tcacattctc      3060
     cacaaggcca aaaaactgcc caggcatctc catgcttggc tctgtgcttc gtcacgaggc      3120
     ctactacaag taccttggtg tgattttgga tagaggactt aatttccaga ggcacacaac      3180
     gatgatcaag caggccgtgc tttcaaaggc agcaagtatg tcctggctat tatcaccaag      3240
     aaataagctt tcactttcca acaaagttag gatctacaaa tctattctca gcccaatctg      3300
     gaagtatgca ttacaagtct acggcatagc gtctaagtca aacctgaaaa aaatacgagt      3360
     agcgcaaagt aagattgtca gatcgatttg taatgccccc tggttcatga gaactaggga      3420
     tatagaaaga gatctgaaaa tcccaaagat aggcgatgta atacgtatac attcagaaaa      3480
     atatcatgaa cgccttggct ctcatcctaa ctccctagcg aagaggctaa catggagacc      3540
     taagaaaaag aagattaaaa agataccatc cacatgacct tcctttaaga ttcatatagc      3600
     cgttgtagtt aaaaatgtaa aattaaaata atttagaatt atatatagaa aatagaatta      3660
     attagatata gaattaatgt ataatcattg atacgtactt attgatattc ccctgtaaat      3720
     tacaacctgt tcaagctgcc acaaaggtag cagtataccc gttaatgtta aataaatata      3780
     cacaatttaa aaaaaaaaaa aaaaaa                                           3806
//
ID   Jockey-1_DEl repbase;    DNA;    INV; 4147 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   28-JUN-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DEl.
XX
NM   Jockey-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4147
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 570-570 (2012).
XX
RN   [2]
RP   1-4147
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1324
FT                 /product="Jockey-1_DEl_1p"
FT                 /translation="VAIKHSPSQDVPKFYAEATLNLPKTDTRFAKTKHNKN
FT                 ITVVADKHQQSVVVTMQDDEDDTVWSWQKVKPKPKALKRQNQVSPILIKKK
FT                 LALDTAPSTSSNKFAVLAERSPIEKGNDADENEALEMITEDNVDEPAKPPP
FT                 IFLSDVSDISSMLTYLETKIKKENFLYKSQRDGQVRVMVKSIDEYRSLVKN
FT                 LASDFVKFHTYQLKHERAFRVVIKNLHFSTDIDVIKRDVESKGHSVRNINN
FT                 IKSRGTKEPLNLFFLDIEPNNNNKDIYEVKHIGNAIVKIEPPHKAKDIVQC
FT                 HRCQEFGHTKSYCAKTYRCVKCSRKHSSKLCPKDKEQPAKCANCNEDHAAS
FT                 YKGCRVYKELISKQLATGRKQMHSKDHNKNDSAIFPSPILSDKPTQQPNGY
FT                 QSYAQVAAGNSNTNTSLERIEHLLEKQFELTNNLLNMIMLLVNKLCK"
FT   CDS           1318..4005
FT                 /product="Jockey-1_DEl_2p"
FT                 /translation="MQISLNLGIWNANGLSNHVNEISLFLKTNAIDIMLVS
FT                 ETHFTSKSFFRVVGYDTIRADHPSDRAHGGAAILVKNGLKFKIMDSTRENA
FT                 MQAATIEIKCMHADVSISAIYLPPRFTIKELDFKNFFQGLGTKFIVGGDFN
FT                 AKHPWWGSRLINPKGSELYKCIRNNNITTLSTGKPTYWPTDIRKTPDLIDF
FT                 VAFSGIPQTHIRLMESFDLNSDHSPIIATYSTIAHILDKPYKVISASTDIY
FT                 AFKSYLEEAISLDISLKTGEEIDYAVELFTNTIHKASYINTNHTHRNQQPS
FT                 QLYLTTEIREKIQLKRDLRKRWQETHYPADKRLYNKAASELKQLLSNLRNE
FT                 SLAAYLRNLDPNSSNKEYNLWRATKYLKRPAKRNIIIRKSNGNWCRSDDEQ
FT                 AEAFAQHLHSVFQPNDISNPITEAEIENFLGSPCQMSLPIKRIHFDEVVTE
FT                 IKCLNNKKSPGPDKIDGITLKTLPSKCIRFLTLVFNAILRLDHFPSQWKCA
FT                 EIIMILKPNKTETELSSYRPISLLTIFSKVFEKILLKRMLPILDELAIIPE
FT                 YQFGFRKNHGTTEQCHRVINEIVSALENKKYCTATFLDVQQAFDRVWHNGL
FT                 LYKIKKWLPAPFYLLMRSYLSKRCFYVQQRNDTSTLLRINAGVPQGSVLGP
FT                 VLYTLYTADMPVTNNCTIATYADDTAILATSSSRDEASHLLQCELSLIEAW
FT                 FLRWKIKINSLKSVQITFALRPGNCPNVTLNGSEIPQDTCVKYLGMHLDRR
FT                 LTWKHHIKAKRQQLKLKTLKMSWLLGRKSAATLENKILLYKAILKPVWTYA
FT                 IQLWGTASNSNIEILQRYQSKILRQIVNAPYYVTNANIHKDLNIPTVKEEI
FT                 KKYSKKYTDRLHNHVNNLALGLVDNSLTFRRLKRFHILDLPDR"
XX
SQ   Sequence 4147 BP; 1516 A; 869 C; 718 G; 1044 T; 0 other;
     agtcgcgatc aaacactctc cgagtcaaga cgtgcctaaa ttctacgcgg aagctacgct        60
     taatctacca aaaacagata cgcgatttgc gaaaacaaaa cacaacaaaa acataacggt       120
     ggttgctgat aagcatcaac aaagtgttgt tgttaccatg caagacgacg aagacgacac       180
     ggtttggagc tggcagaaag taaaaccgaa gccaaaggca ctcaagagac aaaaccaagt       240
     ttctccgatt ctaattaaaa aaaaactggc cctggacact gcaccgagca ctagctccaa       300
     taaattcgct gtcttagcgg aacgctcacc aattgaaaaa ggtaatgatg cagacgaaaa       360
     tgaagccctg gaaatgataa ctgaagacaa cgttgatgaa cctgccaagc cgccacctat       420
     attcttatcg gatgttagtg atataagtag tatgctgacc tacctcgaaa cgaaaattaa       480
     aaaagaaaat ttcctctata aatctcaacg agatggtcaa gtgagagtta tggttaagtc       540
     aattgatgaa tacaggtccc tcgttaaaaa tcttgctagt gattttgtta agtttcacac       600
     atatcagctt aagcatgaaa gagcatttag ggtagttata aaaaatttgc acttctcaac       660
     ggatattgat gtaattaaac gagacgttga gtccaaaggt cactctgtta ggaacataaa       720
     taacattaaa agccgtggaa ccaaagagcc actaaatctg ttcttcctgg acattgagcc       780
     caacaataat aacaaagata tctacgaagt taagcatatt ggtaacgcaa ttgttaaaat       840
     agagccccct cataaagcaa aagacattgt tcagtgccac cgttgtcagg aattcggaca       900
     cacaaaatcc tattgcgcca aaacctatag gtgcgtaaaa tgctctcgta agcattccag       960
     caagctatgt ccaaaagata aagaacaacc agcaaaatgt gcgaattgta acgaagatca      1020
     cgctgccagc tacaaagggt gtagagtcta taaggagctt atttctaaac aattagctac      1080
     tggtcgaaag cagatgcata gcaaggacca taataaaaat gattctgcaa tatttccatc      1140
     acctattctg tctgataagc cgacccaaca accaaatggc tatcaatcat acgcccaagt      1200
     tgctgcagga aacagtaata cgaatacttc tctagaaaga atagaacacc ttttagaaaa      1260
     acaatttgaa ctcaccaata acttgcttaa catgattatg ttactggtta ataaattatg      1320
     caaataagtc taaacttagg aatctggaat gccaatgggc tttccaacca tgttaatgag      1380
     atatccttat ttttaaaaac aaatgcaatc gacatcatgc ttgtttcaga aacacacttc      1440
     accagtaaat ctttttttag agtagttgga tatgacacaa taagagctga tcatccgtct      1500
     gatagagccc atggaggcgc agcaattctt gtcaaaaatg gtctaaaatt taaaatcatg      1560
     gacagcacca gagaaaatgc tatgcaggct gccacaattg agattaaatg catgcacgca      1620
     gatgtctcaa tctcagcaat atatcttcca ccaagattta caataaaaga gctcgatttt      1680
     aagaactttt ttcaaggact ggggacaaag tttattgttg gaggcgactt caatgccaaa      1740
     cacccatggt ggggctcgag actcattaac ccaaagggat ccgaattata taaatgcata      1800
     cgaaacaata atataacaac tctctcaact ggtaagccta catactggcc cacagatatt      1860
     cgaaaaaccc cagacttgat tgacttcgta gcattctctg gtatcccaca aacacacatt      1920
     cgtttaatgg aaagttttga tcttaactca gatcactctc cgataatagc gacctatagc      1980
     acaatagctc atatactaga caagccctat aaagtcatct ctgcttccac agacatttac      2040
     gcgtttaaaa gctacctaga agaagccata agcctagaca tttcgttaaa aacaggagag      2100
     gaaatagact atgctgtgga gcttttcaca aacacaattc acaaagcgag ctatataaat      2160
     acgaatcaca cccacagaaa ccaacaacca agccaactgt accttactac tgaaattcga      2220
     gaaaaaattc aactcaaaag ggatctgaga aaacgttggc aagaaactca ctatcctgct      2280
     gacaaaaggt tatacaacaa agctgcatct gagcttaaac aattactgtc taacctacga      2340
     aatgaatctc tagcggcata tttgagaaac ttagacccta attctagcaa caaagagtat      2400
     aacctgtgga gagcaaccaa atatctaaag agacctgcaa aaagaaacat aatcatccgc      2460
     aaaagcaatg gaaattggtg tagatctgac gatgaacaag ctgaggcatt tgctcaacac      2520
     ctgcactctg tgtttcagcc aaacgatatt agcaatccta taacagaagc tgaaatagaa      2580
     aactttcttg ggtcaccctg tcaaatgagc ttgcctatta aaagaattca ttttgacgaa      2640
     gttgtcacag aaattaaatg cttaaacaat aaaaaatcac caggcccgga taagatagat      2700
     ggcatcactc ttaaaactct accatcaaaa tgcatacggt ttctcacgct agtatttaac      2760
     gctattctca ggctagacca cttcccaagt caatggaaat gtgcagaaat cattatgatc      2820
     ctcaagccaa acaagacaga aactgaacta tcatcttacc gtcccattag tctgttgaca      2880
     atattctcga aagtatttga aaaaatacta ctgaagagga tgttgccaat tttggacgaa      2940
     cttgccatca ttcctgaata tcaattcgga ttcagaaaaa accacgggac cactgagcaa      3000
     tgtcataggg ttatcaatga aattgtatct gcacttgaga ataaaaaata ttgtactgca      3060
     acatttcttg acgttcagca agcttttgat cgtgtttggc acaatggatt actctacaag      3120
     ataaagaaat ggctgcctgc tccattctat ttattaatga gatcctactt gtctaagaga      3180
     tgcttctacg tgcagcagag aaatgatacg tcaacactac ttcgcataaa cgcaggcgtt      3240
     cctcaaggga gtgtattggg accagtcctt tacacactat acacggcaga tatgccagta      3300
     acaaacaact gcaccattgc aacatatgct gacgatacag ccattctggc aacaagctca      3360
     tctagagacg aagcatctca tctcttgcaa tgtgagctca gtctgattga ggcctggttc      3420
     cttcgctgga aaattaaaat caactccctg aagtctgtcc aaataacttt tgcactaaga      3480
     ccaggaaact gtccaaatgt cacacttaac ggctcagaaa ttccacaaga cacctgtgtg      3540
     aagtatcttg gcatgcacct cgaccgcaga ctaacatgga aacaccacat aaaagcgaaa      3600
     agacaacaac tcaaactgaa aacactgaaa atgtcctggt tactaggtag aaaatcagca      3660
     gccactttgg aaaacaaaat tcttctctac aaagccattt tgaagcctgt ttggacctac      3720
     gctatccaac tctggggaac agctagcaat tcaaatattg aaatacttca gcgctaccaa      3780
     tcaaaaatct tgcgacaaat tgttaacgct ccatattatg taaccaatgc aaatattcat      3840
     aaagatctaa atattccaac tgtaaaagag gagataaaaa aatatagtaa gaaatataca      3900
     gacagacttc acaatcatgt aaataattta gccctaggtc tagtagacaa tagcttaaca      3960
     ttcagaagac tcaaaagatt ccacattctt gatctccctg ataggtaaat ttaagtaaac      4020
     gagaaattaa attaatagca ggtttcactg gaaatctgct attcctgtta tgtaaatatt      4080
     agtgatacaa tttacttatt gtcattagac agattgtaaa taaaaattaa attaaaaaaa      4140
     aaaaaaa                                                                4147
//
ID   Jockey-1_DEr repbase;    DNA;    INV; 4709 BP.
XX
AC   .
XX
DT   23-SEP-2011 (Rel. 17.03, Created)
DT   23-SEP-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila erecta genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DEr.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4709
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 408-408 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           509..1876
FT                 /product="Jockey-1_DEr_1p"
FT                 /translation="MGKNAMEVDNVALPTSKKNGWQTLVPKKNAGKRKEPP
FT                 NVATTVNPKVPKVLKHIKKKTSATGSSSSSESESDNESEEPGEVRQFTVPQ
FT                 KKKTAKLAKVNEVSDAEELLSNTNRFAALPIEEDVVTKEPAIPVEAAVPKP
FT                 PPIIIPGVHSIADMLADLGEVTEPGSFAYKATGGGSVRIMPKDSSTYRKIV
FT                 NHMDNHNMAFRTFQLKENRAFRVVIKGLHSTTPVDYITEELKGLGHIVRDI
FT                 KNAISRTTKNPMAMFFVNLEPSSNNKKVFEINRLCHAVVSTEEPRKFNDLV
FT                 QCYRCQAFGHTKRYCRLQYTCVKCGQGHASIECTKAKDAPATCGNCGEAHT
FT                 ASYQGCRVYIEAKKRASPKPKAKAMTPPPKEAHTPPATTNNATFSGFSYAD
FT                 VTRGGYPQQQQPKHIFNQQGLIDREAALEERIMRRMENMMASMFSQFKDMV
FT                 MAMFSCQRTMP"
FT   CDS           1876..4581
FT                 /product="Jockey-1_DEr_2p"
FT                 /translation="MNTQIVIWNANGLARNKPEVELYLKTNQVDVMLVSET
FT                 HFTTRSHFKIPGYEVVNALHPADRIRGGATVIVRSGLLYEEMEPVQLDWMQ
FT                 CARIQLLTHSGKICIAAAYLPPRYTISHPELSLQLKNLGPKFLIGGDFNAK
FT                 HTWWGSRIVNPKGSTLLRCVRELGCNLHTTGEPTYWPSDPNKIPDLLDLGI
FT                 SRGIDPAKVSTVGCYELCSDHSMVRILLRTSFLRTPGGTKLIRRNTDTTVF
FT                 KSWLEENVDPHPAISTGGDIDDAVASLTGKIQQAARLATPTPPTNSGRLQV
FT                 ARRDNHLWSTELASMVSEKRRLRRVWQSSRAPSDKRAYNRACKQLKQMLHD
FT                 SRSKALEEYLVELEPGNAEHNIWNATKYLKRPARRVPPVKTAAGVWCRSSQ
FT                 EKADAFADHLETSFQPFALCDDEDVEETKQFVDAACPMDLPIAEIGSQEIL
FT                 DEISCLKLTKSPGHDQIDAAALKLLPANCIEFLKALMNQCLRLGHFPSQWK
FT                 CAEVILIHKPGKPEAELGSYRPISLLAILSKILEKLFLKRLLTILEEKRII
FT                 PDHQFGFRQGHGAIQQCHRVVSRVLDAFENKKYCAAVFLDVRQAFDRVWHL
FT                 GLLFKLKQQLPTPYYMFLKAYVEERRFYVRSSNSKSPQHVVRAGVPQGSVL
FT                 GPVLYNIFTSDMPVSEDNRILTCTYADDTALLCSDATPTLAAQGLQHELDT
FT                 IQSWLKRWNITINADKSTYVTFTLRPGNCPPVHINGTNIPSNAKAKYLGLT
FT                 LDKRLTWKDHIGEKVKLMRHKCRSMTWLLGRRSTLPTRYKLLLYKAIIKPA
FT                 WTYGIELWGTASPTNIKKLQRAECRILRFILNCPYYVRNTTIKRDLKMQSV
FT                 AEESRKASRRHLEKLENHQNQLAINLLDNSLQRRRLRRNHPLDLPFRIP"
XX
SQ   Sequence 4709 BP; 1368 A; 1249 C; 1161 G; 930 T; 1 other;
     agttgccaaa tgcctcgtca tcaatttagt ggagtttttt aaaaagtgtt tattttctga        60
     gtgattttcg ctgtgaaaaa gttaacctgg aatctttaaa aacgtacaga aagttgggcc       120
     aagtcctgga gtgcgtgtga tacacgaacg caagttcatg caacgtgtcc tttggctgca       180
     gatggtattt aacttatttg caaaagtgca cgtagctagc aaatcagctg actggtgtca       240
     ccagtcgtcg cctactcagc tggtggaaca gctgttccag tggtgtgtgt actggctaaa       300
     ctgaatccga taaccacaac cagtttcgac ataggtggcg cctttacccc tatagttaaa       360
     aatttctccg ccagagggcg tcaatcagtc ccataaagcg ccagcaggtg gcgctctttg       420
     ctcccccctt ctgcgcctga caattacaca cacactcata cagaaaaggc aaaaatctta       480
     aagacacgtg ctactgcacg cagttcccat gggcaaaaac gctatggaag tggataatgt       540
     ggctttgccc acttctaaga aaaatggttg gcaaacgctg gtgcctaaga agaatgcagg       600
     caagcgcaag gagccaccta acgtagccac gactgtaaac cccaaagttc ccaaggtact       660
     aaaacacata aagaagaaga cgtcggccac tggcagctcc agctccagcg aaagtgaatc       720
     tgacaatgaa tccgaggaac caggtgaggt acgacagttc accgtgcccc aaaagaaaaa       780
     gacagctaag ctggccaaag tcaatgaggt cagcgatgct gaggagctgc tgtcaaacac       840
     caaccgattc gctgcactgc ctatcgaaga ggacgttgtt accaaggaac cagctatacc       900
     agtggaggcc gctgtaccca agccccctcc aatcataata cctggggtgc acagcatcgc       960
     agacatgcta gctgaccttg gagaagtcac cgagccaggt agcttcgctt acaaggctac      1020
     cggaggaggt agcgtaagaa ttatgccgaa agacagctcg acatatcgga aaattgtcaa      1080
     ccacatggac aaccacaaca tggccttcag gactttccag ctcaaggaaa accgagcttt      1140
     tcgcgtggta attaaggggc tacattcaac aacgccagtt gactacatca ctgaagaact      1200
     aaaggggctc ggacacattg ttcgagacat caagaacgcc atctcaagaa ccacaaagaa      1260
     ccctatggct atgttctttg taaacttgga gccttcaagc aacaacaaaa aggtgttcga      1320
     gatcaacagg ctctgccacg ctgtggtctc naccgaggag cccagaaagt tcaatgacct      1380
     ggtgcagtgc taccgctgcc aggctttcgg gcataccaag aggtactgca gactgcagta      1440
     cacttgcgta aagtgcggtc aagggcatgc ctctatcgag tgcactaagg ccaaagacgc      1500
     tcctgctaca tgcggtaact gcggggaggc gcacactgcg tcataccaag gctgccgtgt      1560
     atatatcgag gccaagaaga gggcttcccc caagccaaaa gcgaaggcaa tgactccacc      1620
     gccgaaagag gcccatacac caccagcgac aaccaacaac gccacattct ctggctttag      1680
     ctacgctgac gtcaccaggg gaggataccc ccagcaacag caacccaaac acatcttcaa      1740
     ccaacaaggt ctcattgacc gggaggcagc gttggaggag agaataatga ggcgcatgga      1800
     gaacatgatg gcctcaatgt tctcccagtt taaagacatg gtgatggcca tgttctcctg      1860
     ccagagaacc atgccatgaa cacacaaata gtaatctgga atgctaacgg cttggcgagg      1920
     aacaagccag aagtggagct ctacctgaaa accaaccagg tggatgtgat gctggtcagc      1980
     gagacccact ttacaacgag gtctcacttc aaaatccctg gctacgaagt ggtcaacgcc      2040
     ttgcacccgg cggacaggat cagaggtgga gccacagtaa tcgtgcgaag tggattactg      2100
     tacgaggaga tggagccggt gcagctggac tggatgcaat gcgccaggat tcagctgctg      2160
     acacattcgg gcaaaatttg tatcgcggca gcatacttgc ccccgcgtta cacaattagc      2220
     catcccgagt tgtcattgca gctgaaaaac ttgggtccca aatttcttat tggcggagac      2280
     tttaatgcca agcacacatg gtggggctcc aggattgtca accccaaggg cagcactctg      2340
     ctgaggtgcg tcagagagtt gggctgcaat ctgcacacaa cgggagagcc gacatactgg      2400
     cccagtgacc ctaacaaaat accggacctc cttgatctag gcatcagtag aggcatcgac      2460
     ccggcgaaag tatctacagt tgggtgctac gagctgtgct ctgaccacag catggtcagg      2520
     atactactta ggacctcctt cctaaggact cccggaggca ccaaactgat caggcgaaat      2580
     accgacacaa ctgtgtttaa aagctggctt gaagaaaacg ttgacccaca tccggctatc      2640
     agcactggag gagacataga cgatgccgtt gctagcctta ctggcaaaat ccagcaggcg      2700
     gcaaggttgg ccacacccac acctcctacc aacagtggga gactccaagt ggcccgcagg      2760
     gacaaccatc tatggtcgac tgaactggcg tcgatggtat cggagaaaag gaggctgagg      2820
     agagtctggc agtctagcag agctccgtct gacaagaggg cctacaacag agcctgtaag      2880
     cagctcaaac agatgcttca tgactcgaga agcaaggcgc tcgaggagta cctagtagaa      2940
     ctggagcctg gcaatgctga gcacaacatc tggaacgcca ccaaatacct gaagaggcct      3000
     gcgcggaggg tgccacctgt taaaacagct gcaggtgtat ggtgccggtc aagccaagag      3060
     aaagcggatg cgtttgccga ccatctggaa accagtttcc agccattcgc cctatgtgat      3120
     gacgaagacg ttgaagagac gaagcagttc gttgacgcag cctgcccgat ggacctgcct      3180
     atcgcagaga taggtagtca ggagattctg gatgagatct cgtgcttgaa gctcaccaaa      3240
     tctcctggcc acgaccaaat cgacgcagct gccctcaagc tactcccagc gaactgcata      3300
     gagttcctca aggctctgat gaaccaatgc ttaagactgg gacactttcc ttctcagtgg      3360
     aagtgcgctg aggttatcct catacacaag ccgggcaagc cagaagccga gctaggctca      3420
     tacaggccga tcagtctact cgccatcctg tcaaaaatcc tggagaagct gttcctcaag      3480
     aggttgctga ccattctgga ggaaaagagg atcatccccg accaccagtt cggtttcagg      3540
     caaggacatg gcgccattca gcagtgccac cgggtcgtct ccagggtctt ggatgccttc      3600
     gaaaacaaga aatattgcgc agcagtcttt ctggatgtga ggcaggcttt cgacagggtg      3660
     tggcacctcg gcctgctatt caagctgaag caacagttac cgaccccata ctacatgttc      3720
     cttaaggcat acgtcgaaga gaggaggttt tacgtgagga gcagtaactc caaatcaccc      3780
     caacacgtgg tgagagccgg agtaccccag ggcagcgtac tcggtcctgt gctgtacaac      3840
     atattcacct cagatatgcc agtatctgaa gacaacagaa tattgacatg cacctacgcg      3900
     gacgacacag cgctcctgtg ctctgacgca actcctactc tggcagcgca agggctgcaa      3960
     cacgagctgg acacgattca gtcatggctg aaaaggtgga acatcaccat aaacgctgac      4020
     aaatccacct acgtcacgtt tacactcaga ccaggcaact gtccacccgt ccacatcaac      4080
     ggcaccaaca taccgtccaa tgcgaaggcc aagtacctgg gactaaccct ggacaagcgt      4140
     ctcacatgga aggaccacat aggggaaaaa gtaaaactca tgaggcacaa atgccgctcc      4200
     atgacatggc tcctgggcag acgaagcacg ctacccacta gatacaaact actgctctac      4260
     aaagccatca taaagccggc ttggacatac ggcattgagc tgtggggcac tgcctcccct      4320
     acaaatatca aaaaactaca gagagcagaa tgccgcattc taagatttat cctcaactgt      4380
     ccttactacg tgaggaacac aacaatcaaa agggacctca aaatgcaaag tgtcgccgag      4440
     gaatccagga aagctagcag gaggcacctg gagaagctgg agaaccacca gaaccaactt      4500
     gcaatcaacc tccttgacaa cagcctacag cgcagaagac tccgaagaaa ccacccactt      4560
     gacctacctt tccggattcc ctaaaggaat cctctgatga ccctagctaa caaatataag      4620
     atttttagtg acgcatatga tattgtccct atcatattat agaaataaag aacttaaaga      4680
     aatcaagtca agttgccaag acgcatatg                                        4709
//
ID   Jockey-1_DEu repbase;    DNA;    INV; 4729 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4729
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 947-947 (2012).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           195..1928
FT                 /product="Jockey-1_DEu_1p"
FT                 /translation="MPATKPITSAPGKQTTQSRERQQQQQDERRLSVARNN
FT                 AYFSYVSPEPKSSAMSLTATEDVRSLSPRLLTPSSVAVTQSWSSQCPSPLS
FT                 PIDALPAVWAISSTVSSVTTVSANTTTTASTMSSALQPILSSQAEPTTTTA
FT                 TAFTSVTKATKTTTNQDQNKTQQAGSAIQTGLDRYIHIKRKLSPQNNAVCN
FT                 KSKINRVQTENKIPGNSNSNRFALLAVNEPERAQETQPKPKPPPIYIREKI
FT                 TNALVNKIVALTGDGNFHVVPVTKGDIHETKLQTKSEEQYRAVSKYLEEAR
FT                 KSYYTYQLKSSKGLQVVIKGIEPDVTAKEVIDALKDKGFSAKNVSNIVNRK
FT                 KEPQPLFRVELEPDSKVMKKNEVHPIYNLKYLLHRRITVEEPHKRNGPVQC
FT                 TNCQEYGHTRAYCSLRTVCVACGDFHNSANCPANKEDPKKKKCVNCQGNHT
FT                 ANYRGCPIYKEIKDRMRKVTATRHQNTLNVYNYPRTTPEVFSDTAARSSLG
FT                 QLNTQKGCSYADALRSGTENPLQPNLENAQQTQLQSQGTLESMMITMQQSM
FT                 MEFMSFMKTTMQTLVHNQNMVLQLLVAKQSK"
FT   CDS           1935..4583
FT                 /product="Jockey-1_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANLRITMWNANGVSRHNHEVTQFLNDNHIDIMLLAE
FT                 THLTNKYNFQVRGYTLYRTDHPDGKAHGGAGILIRERIRHHFHRSFATNYX
FT                 QATSIQVQSGNGHLTIAAVYCPPRFTISEGQFMDFYNLLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKPNNKLDYVSPGSPTYWPTDPRKVPDLID
FT                 FAVTKNIPRNLISARALSDLSSDHSPVQITLLQCTKITDDPHRLTSHRTNW
FT                 LKYKKYVSSHIKLNPQFNLAADIDGSTDALEEVFVKAATIATPQCREMETN
FT                 HLKTNLQIERLVLEKRSLRRAWQTNRSPSSKQRLIKATRLLNRALKQEAEK
FT                 AQLRYIKKLSPTSTKHPLWRAHPNLSSPVETVTPIRNSSGSWVRSDADRAE
FT                 TFALHLRNVFQPNPATGSFVLPQIESESISLPPLFQPKEIAKVIGELKQKK
FT                 APGGDQITPKMITELPNSAVEVICKLFNGIMTLGYYPKKWKKSIVIMIPKP
FT                 GKDRTISSSYRPISLLSCLSKLFEKCLLTRIIPYLEAHNVIPAHQFGFRQN
FT                 HGTIEQVNRITSEIRTAFQHREYCSAIFLDVCQAFDRVWLDGLMHKIKTHL
FT                 PGYTHKLLESYLYNRTFAVRCNTATSGDYIIKAGVPQGSAIGPTLFLLYTS
FT                 DIPTNEQLTTSTFADDTAILSRSGCPGRATTQLANHLLVVERWLSDWRIKI
FT                 NEQKCKHITFTLNRQTCPPLSLNNTQIPQVNDVTYLGVHLDRRLTWRRHIQ
FT                 CKKEHLKLKANSLHWILNARSPLRLEYKVLLYNSTLKPIWTYGSQLWGNAS
FT                 RTNIDIIQRVQSKTLRIITGAPWYIRNLNIHRDLGILTVKDEIDKQKASYN
FT                 EKLSMHPNXLARSLVPSRSRLQSNDLHSQQ"
XX
SQ   Sequence 4729 BP; 1591 A; 1243 C; 909 G; 983 T; 3 other;
     gtactttgcc cagtgcagac gtgttttctt cagcgctctc acagtgtgtt cgtaagcgta        60
     gtaacaaacg gaaaaaaata ttaaaataaa agcgaaagga cgctggcagc gatgccaaat       120
     agcaagggtt ttgattccct gcaaacttaa catctaaacc acaaaaaaac aaataataag       180
     agaaaactga acaaatgcca gcaaccaagc caataactag tgcacccgga aaacaaacga       240
     ctcaaagccg cgaaagacaa caacagcaac aagacgagcg ccgactctct gttgctcgaa       300
     acaacgcgta cttttcgtat gtctctccgg agccaaaaag tagtgcaatg tcgttgaccg       360
     caaccgaaga cgtccgctct ctgtcgcccc gactcctaac cccaagcagc gttgccgtta       420
     ctcagtcttg gagctcacaa tgcccttccc ccctctcccc gatcgatgca ctgccggcag       480
     tttgggcaat ctcttctacg gtgtcatcgg taactaccgt ttctgcaaat acaacaacaa       540
     ctgcgtctac gatgtcgtcg gctctccagc caattctctc atcgcaagct gaaccaacaa       600
     caaccacagc tactgccttt acttcagtta caaaggcaac aaaaactaca actaaccaag       660
     accaaaacaa aactcagcaa gcgggttcag ccatacagac cggacttgat cggtacattc       720
     atatcaagcg taagctcagc ccgcagaata acgccgtatg taacaagtca aaaataaacc       780
     gtgtccaaac tgaaaataaa atacctggga attcgaacag caatagattt gcgctcctag       840
     cagtaaatga accagaacgg gctcaggaga cccaaccgaa acctaagccc ccaccaattt       900
     acattaggga gaaaattacg aacgccctgg taaacaaaat tgttgcgctg actggggacg       960
     gaaactttca tgttgttccg gtcacaaaag gggatatcca tgaaaccaag cttcagacca      1020
     aatctgaaga acagtaccga gctgtttcca aatacctgga ggaagctagg aaaagctact      1080
     acacgtacca acttaaaagc agcaagggct tgcaagtggt aataaaaggt atagagccag      1140
     acgtaaccgc caaggaagtt atcgatgctc ttaaggataa agggttctct gcaaaaaacg      1200
     ttagtaatat cgtgaacaga aaaaaagagc cgcaaccact cttcagggtc gagctcgagc      1260
     cagatagcaa agtcatgaag aaaaatgaag tgcatcccat ctataatctg aaatacttat      1320
     tgcaccgaag aattaccgtg gaagagccac ataaaagaaa cggcccagtg caatgcacaa      1380
     attgtcagga gtatggacac accagggcct actgttcact tcgaacagtc tgtgtagctt      1440
     gtggagactt ccacaactcg gccaactgcc ctgccaacaa agaagacccc aaaaagaaaa      1500
     aatgcgtcaa ctgccaaggt aaccacacgg caaactacag aggctgcccg atctacaagg      1560
     agataaagga ccgaatgcgt aaagtgacag caacgcgtca tcagaatacc ctaaatgtgt      1620
     acaattaccc gcgtacgacg ccggaagttt tctccgacac ggctgctaga tcctcactgg      1680
     gtcaactaaa tacccagaag ggctgctcat acgccgatgc ccttcgatca gggacggaaa      1740
     acccactcca gcctaatcta gaaaacgctc aacagaccca acttcagtcg caaggcactc      1800
     tggaatctat gatgatcacc atgcaacaaa gtatgatgga attcatgtca ttcatgaaaa      1860
     cgaccatgca aacactggtt cataaccaga acatggtgct acagctactt gtagctaagc      1920
     agtccaaata acagatggca aatctacgaa taacgatgtg gaacgccaat ggcgtttcac      1980
     ggcacaacca tgaagtaaca cagtttctga atgataatca tatcgacatt atgctactgg      2040
     cagagacgca cctcacaaac aaatacaact tccaagtaag aggatacact ctctaccgca      2100
     cagatcatcc ggatggtaaa gcccacggcg gagccggcat cttaatcagg gaacgcatca      2160
     ggcaccactt tcaccgaagt tttgcaacta attatwtgca agccacgtct attcaagtgc      2220
     agtcaggcaa cggacacctc accatagccg ctgtttactg cccacctcgc tttacaattt      2280
     ctgaaggaca attcatggac ttctataacc tgcttgggga tcgttttata gccgcagggg      2340
     actataatgc caaacacacg cactggggat cacgccttgt gactcccaaa ggaaggcaat      2400
     tatacaatgc aatcataaaa ccaaacaaca aattagacta cgtttccccc ggcagcccca      2460
     catactggcc aacagacccc cggaaagtcc cagacctaat agactttgcg gtgacaaaaa      2520
     atattccacg aaatttaata agcgccagag cactttcgga cctgtcgtca gaccattctc      2580
     cagtgcaaat aactctcctt caatgcacaa aaattacaga tgacccccac aggttgacgt      2640
     cgcacagaac caactggtta aaatacaaaa agtatgtaag ctcacacatc aaactaaacc      2700
     ctcaatttaa cctcgcagct gacatcgacg gctctaccga tgctcttgaa gaagtattcg      2760
     tgaaggcagc cactatcgca acaccacaat gcagggagat ggaaaccaac caccttaaaa      2820
     ctaatctgca aattgaacgg ctagtcctag aaaagaggag cctgcgacgg gcctggcaaa      2880
     caaacagatc gccatcatca aaacaacgtc ttattaaagc cactcgctta ctaaatcgag      2940
     ctctaaagca agaagcagaa aaggcacaac tgcggtatat taaaaaactt tcgccaacca      3000
     gtacaaaaca tcctctgtgg agggctcatc caaatctgag ctcccctgtc gaaacagtca      3060
     cgccgataag aaattcatct ggcagctggg tacgcagcga cgcggataga gccgaaactt      3120
     ttgctttaca tctcagaaac gtcttccagc cgaaccctgc cactggttca tttgtactac      3180
     cacaaataga atctgaatct atttccttgc caccattgtt tcagccgaag gagatcgcga      3240
     aagtcattgg ggaactgaaa cagaaaaagg cccctggcgg tgaccaaata accccaaaaa      3300
     tgataaccga acttccaaac tctgccgttg aggttatttg taagctcttc aatgggatca      3360
     tgacactcgg ctactaccca aaaaaatgga aaaaatctat tgtcattatg ataccgaagc      3420
     ccggaaaaga ccgtacaatt tcgtcatcct acagaccaat cagtctatta tcgtgtttgt      3480
     ctaagttgtt cgaaaaatgt cttctaaccc gcataatacc atatctagaa gcacacaatg      3540
     ttatccctgc ccatcaattt ggcttccgtc aaaaccatgg aacaatcgaa caagtaaaca      3600
     gaataacatc agaaattcgc acagcctttc agcatcggga atactgcagc gcaatattcc      3660
     tcgacgtatg tcaagccttt gatmgagtat ggctagatgg tctcatgcac aaaattaaaa      3720
     cacacttgcc tggatacact cataagcttc ttgagtcgta tttatacaac agaaccttcg      3780
     cagtaaggtg caacacagca acatccggag actacattat caaagctgga gtcccgcaag      3840
     gaagcgcgat agggcctact ctgttcctcc tatacacatc ggatattccc acaaatgagc      3900
     agctaacaac atctacgttc gctgacgaca ccgcaattct aagtcgctcg gggtgcccag      3960
     gcagagccac cacacagcta gcaaatcacc tgctcgtagt agagaggtgg ctatctgatt      4020
     ggcggattaa aataaatgaa caaaaatgta aacacataac gtttaccctc aacagacaaa      4080
     cttgccctcc actatcatta aataacacgc agattcccca agttaacgat gtaacgtacc      4140
     tcggcgtcca ccttgacaga cgactaacct ggagaagaca catccaatgc aaaaaagaac      4200
     acctaaaact gaaagccaac agcctccact ggattcttaa cgcccgttca cccctgcgtc      4260
     tggaatacaa ggtcttgctc tacaactcta ccctcaagcc catctggaca tatggctccc      4320
     agctatgggg gaacgccagc agaacgaata tagacattat acagcgcgtc cagtcaaaaa      4380
     ccctccgaat tatcactggg gcaccatggt atattcgcaa tctaaacatc cacagggacc      4440
     taggcattct taccgtaaaa gatgaaatag acaaacaaaa agcgtcctac aatgaaaaac      4500
     tctctatgca ccccaatckc ctcgcaagaa gcctggttcc cagccgatcc cgtctacaaa      4560
     gcaacgacct gcacagccag caataacttt cgggccccct atagcacaat atcagtcata      4620
     tgacagttag ttagagtaat taggtttaag atttgataca cttattgtta gtctccatag      4680
     ggagaagatt caataaaata aatagcaaag taaaaaaaaa aaaaaaaaa                  4729
//
ID   Jockey-1_DF repbase;    DNA;    INV; 4653 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   26-SEP-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4653
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 969-969 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           215..1855
FT                 /product="Jockey-1_DF_1p"
FT                 /translation="MSGEQNNERRSSVNQRNACYAYFSTRDTEVEKTSTKS
FT                 NPALLAVESTRARSLSPALLIPTPTSWSYQCQTPPPPASMGDAPTTSSASI
FT                 STTSAKVTATTKATTNIAKTVSTAPSQTATATKTVSFDKQQAVPAIQTGMD
FT                 RYIQIKRKLSPQNTVGNKPKINRTIQAKEKTRISNNSNRFSLLADGESQAE
FT                 PEQVTQKKPKPPPIYIREKSSNALVNKIVALVGDENFHVVPLIKGNIHETK
FT                 VQTKYEEHFRAVSKYLEETKKNFYTYQLKSSKGLQVVLKGIEPDVAPSEIL
FT                 EALKDKGFSAKNVSNIINKNKKPQPLFKVELEPDSKTLKKNEVHPIYKLQF
FT                 LLHRRITVEEPHKRNGPVQCTNCQEFGHTRTYCTLRSVCVVCGDFHNSAHC
FT                 PANKEDPHTKKCGNCGGNHTANYRGCLVYKELKSRMRQATATRQQNTQNVY
FT                 FKSKTTPDVFFAKAARSSFGPLSTTNGISYADALRTGMEKPLQPHSENAQQ
FT                 VPAQPQSNLETMMFTMQQSMMEFMSFMKATMQTLVQNQNMVMQLLVSQQSK
FT                 "
FT   CDS           1862..4516
FT                 /product="Jockey-1_DF_2p"
FT                 /translation="MTNLRISMWNANGISRHKLEITQFLNVNHIDAMLLVE
FT                 THLTSRYNFHIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFHQRFATNYL
FT                 QATSIKVQSGNDNLCIAAVYCPPRFTISEGQFMDFYNSLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNALINVRNKLDYVSPGSPTYWPADPRKIPDLID
FT                 FAVTKNIPRNLISATALPDLSSDHSPLLITLLQSPEITDYTYRLTSHRTDW
FT                 MKYRKYVSSHIELNTQLNIEEDIDCSTAALEEVLVTAARISTPQRHDVQIK
FT                 KFKTNLQIEQLVLEKRRLRRAWQTSRSPCSKQRLNEATRKLNRVLKQDAEN
FT                 AQLRYIEKLSPTSAKHPLWRAHPNLSSPAETVSPIRNSSGGWARSDTDRAE
FT                 TFASHLRGVFQPNPAASPFVLPEIQTESESTIPSFRPNEITKVIRRLKPKK
FT                 APGGDQITPKMIIELPNCAIEVICKLFNGIISLGYYPKKWKKSIIIMIPKP
FT                 GKDHTIPSSYRPISLLSCLSKLFEKCLLTRILPYMGAHNIIPAHQFGFREK
FT                 HGTIEQVNRITSEIRTAFEHREYCSAIFLDVSQAFDRVWLNGLMHKIKTHF
FT                 PGYTHKLLESYLYNRVFAVRCNTTTSENYKIEAGVPQGSALGPTLFVLYTA
FT                 DIPTSDRLLTSTFADDTAILSRSRCPVRATSQLANHLTVVEKWLSDWRIKI
FT                 NEQKCKHVTFTLNRQTCPPIYLNSTQIPQVNEVTYLGVHLDRRLTWRRHIE
FT                 CKKLHLKLKASSLHWIINARSPMCLDYKVLLYNSTLKPIWTYGSQLWGNAS
FT                 KTNIDIIQRAQAKILRTITGAPWYIRNENIHRDLGILAVKDEIEKQKASYK
FT                 EKLSAHPNPLARDLTRVSRRTRLQRNDLPTQP"
XX
SQ   Sequence 4653 BP; 1544 A; 1238 C; 904 G; 966 T; 1 other;
     ggatccaagt gaactgtcaa tgacaacaga cgtgttttta tatcgctccg ccgagtaact        60
     aaaaatacat cggaaatatc agatttctat ttcgcgaaat tcgctcaggg tacgcgtggg       120
     tactcctgct catgttgcct atatctaatt gctaatataa gtgatataat acagtttttt       180
     cacaaatttt gccacgcgcg ataagctcaa ataaatgagc ggcgagcaaa ataatgagcg       240
     tagaagctcc gtaaaccaaa gaaacgcttg ttatgcttat ttctcaaccc gcgataccga       300
     agtagagaaa acgtctacaa agagcaaccc ggccctactg gccgtcgaaa gcacgagagc       360
     ccgctctcta tcaccagccc tactcattcc aactcctaca tcttggagtt atcaatgcca       420
     gaccccacca ccaccggctt ctatgggaga cgcaccaaca acaagcagtg cttcaatttc       480
     tactacctca gcaaaagtaa cggcaacaac taaagcaacg accaatattg cgaaaacggt       540
     gtcaacggct ccatcgcaaa ctgcaacggc aacaaaaacc gtaagctttg ataagcaaca       600
     agcggttccg gccatacaga ccggtatgga tcgctacatc cagataaagc gtaagcttag       660
     tccgcaaaac acggttggta acaaaccaaa gatcaaccgt acaatccaag ccaaagaaaa       720
     aaccaggatt tccaacaaca gcaaccgatt ttccctctta gcagatggtg agagccaagc       780
     tgagccggag caagtgaccc aaaagaaacc aaagccccca cctatttaca ttagggaaaa       840
     aagctcaaac gccctggtca acaaaattgt tgcgctggtc ggggacgaaa attttcatgt       900
     tgttccgctt attaaaggga acatccacga aactaaagtt cagacgaaat atgaagaaca       960
     cttccgagct gtttccaaat acctggagga aacgaaaaag aatttttaca cctaccaact      1020
     aaaaagcagc aaagggctac aggtagtact aaaaggaatc gaacccgacg tcgccccctc      1080
     tgagatacta gaagccctta aagacaaggg attctctgct aagaatgtta gcaatattat      1140
     caacaaaaat aaaaagccgc aaccactctt taaggtcgag ctcgagccag atagcaaaac      1200
     cctaaagaaa aatgaagtgc acccgatcta caagctgcag ttcttactgc accggaggat      1260
     cacagtggaa gaaccacaca aacggaacgg cccagtgcaa tgtacaaatt gtcaggagtt      1320
     tgggcacacc aggacatact gcacacttcg gtcagtttgt gtagtctgcg gagacttcca      1380
     caattccgca cactgccctg ctaacaaaga agatccccat acaaaaaaat gtgggaactg      1440
     cggaggaaac catacggcaa actacagagg ctgtctggtc tacaaggagc tgaagagtcg      1500
     catgcgacaa gcgacagcta cgcgtcaaca aaatacacaa aatgtgtatt ttaaatcaaa      1560
     aactacgcca gacgtatttt tcgccaaggc agccagatca tctttcggtc cgctcagtac      1620
     caccaacggc atctcctacg ctgatgctct acgaacgggc atggaaaaac cactccagcc      1680
     acactcagaa aacgctcaac aggtcccagc ccagccgcaa agcaatttgg aaactatgat      1740
     gtttaccatg caacaaagta tgatggagtt catgtcattt atgaaagcga ccatgcaaac      1800
     gctggtccag aaccagaata tggtgatgca gctgcttgta tcacagcagt ccaaataatn      1860
     aatgaccaat ctacgaatat ccatgtggaa tgccaacggc atttcacggc ataaactgga      1920
     aataacacaa ttcctaaatg taaatcacat cgacgccatg ctgctggttg aaacccacct      1980
     cacaagcaga tataacttcc atatacgggg gtataccttc taccgcacag atcatcccga      2040
     tggtaaagcc cacggcggca ccggcatctt aattagagaa cgcatcaaac accattttca      2100
     ccaaaggttt gcaacaaatt acttgcaagc cacgtccata aaagtgcagt caggaaacga      2160
     caacctttgc atcgccgctg tctactgccc acctcgcttt acaatctctg aaggtcaatt      2220
     catggatttc tacaactcac ttggggatcg cttcatagct gctggagatt acaacgccaa      2280
     gcatacgcac tggggatcac gcctcgttac tcccaaggga aggcaacttt ataatgcact      2340
     tataaatgtg agaaataagt tggactacgt ttctcctggt agccccacat attggccagc      2400
     agatcctaga aagatcccag atctaattga tttcgcggtt acaaaaaaca tcccacgcaa      2460
     cctaataagc gccacggccc tacccgatct ctcatcagac cactctccat tgttgataac      2520
     ccttcttcaa agcccagaaa ttacggacta cacctacagg ctgacgtcgc acagaactga      2580
     ctggatgaaa tacaggaagt acgtcagttc ccacattgag cttaacaccc agctcaatat      2640
     cgaagaggac atcgactgct ctaccgccgc cctggaagag gtactcgtca cagcagccag      2700
     gatctcaaca ccacaacgac atgatgtgca aataaagaag ttcaaaacca acctgcaaat      2760
     tgaacagctc gttctggaaa agaggcgtct gcgacgggcg tggcaaacca gcagatcgcc      2820
     atgctcaaag caacgtctaa atgaagccac ccgcaaacta aaccgggttc tgaagcaaga      2880
     tgccgaaaac gcacaactga gatatatcga gaaactctct ccaacaagtg caaagcatcc      2940
     tttgtggagg gctcacccaa acctaagctc tccggctgaa accgtctccc cgataagaaa      3000
     ttcttcaggt ggctgggcgc gcagcgacac agacagagcc gaaacatttg cctcacatct      3060
     caggggcgtc ttccaaccga atcccgccgc aagtcctttc gttctaccgg aaatccaaac      3120
     tgaaagcgaa tctacaatac catcgtttcg accgaacgag atcaccaaag tcatccggag      3180
     gctaaaaccg aaaaaggctc ccggcggtga ccaaataact ccaaaaatga taattgaact      3240
     tccaaactgt gctattgagg tcatctgtaa actcttcaat gggatcataa gtcttggcta      3300
     ctacccaaaa aaatggaaaa agtcaataat tataatgata ccgaagcccg gaaaagatca      3360
     cacgattccg tcctcttaca gaccaataag tcttttatca tgcctgtcca aactgttcga      3420
     aaaatgcctt ctaacacgca tattaccata tatgggagct cataacatta tcccagccca      3480
     tcaatttggc ttcagagaaa aacatggaac tatcgagcaa gtaaacagaa taacatcaga      3540
     gattcgcaca gccttcgaac atagagaata ctgcagcgcg atattcctcg acgtatccca      3600
     agcattcgac cgcgtctggc tcaacggtct tatgcataaa atcaaaacac actttcccgg      3660
     gtacactcac aaattactcg agtcgtatct ctacaacaga gtcttcgcag tgaggtgcaa      3720
     cacaacaaca tccgaaaact ataaaatcga agctggagtc ccacaaggaa gcgcacttgg      3780
     accaactcta ttcgtccttt acacagcgga tattcccacg agcgaccgac tactaacatc      3840
     caccttcgct gacgatactg cgatcctcag ccgctccaga tgcccagtcc gtgcaacatc      3900
     ccaattagcc aaccacctca cggtagtaga gaagtggcta tccgactggc gtatcaaaat      3960
     aaacgaacag aagtgtaagc acgtaacgtt tactctcaac agacaaacat gccctccgat      4020
     ctacttgaat agcacacaaa tcccccaagt caacgaagta acgtatctcg gcgtccacct      4080
     cgatagacgc ctaacatggc gtagacacat cgaatgcaag aaactacatc taaaactaaa      4140
     agccagcagc ctccactgga ttataaacgc ccgatcgccc atgtgtctgg actacaaggt      4200
     actgctctac aactccactc ttaaaccaat ctggacgtat ggctcccagc tctgggggaa      4260
     cgcgagcaaa actaacatag acatcataca gcgcgctcaa gcaaagatcc tgagaactat      4320
     cactggggca ccatggtata ttcgaaacga aaacatccac agggaccttg gcattctcgc      4380
     agtaaaagat gaaatagaga agcaaaaagc gtcatacaag gaaaaactct cagcacaccc      4440
     aaatcctctc gcaagggatc tgactcgggt ttccagaaga acccgcctgc aacgtaacga      4500
     ccttccaacc cagccataat ttgtcagggc catttttact gttccagtct atatgactga      4560
     tagttaggtt atagtataag atttgataca cttattgtta gtctcgtaag gagaagattc      4620
     aataaacaaa gcaaagccaa aaaaaaaaaa aaa                                   4653
//
ID   Jockey-1_DGri repbase;    DNA;    INV; 5490 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.07, Created)
DT   10-JUN-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon from Drosophila grimshawi.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DGri.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5490
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1323-1323 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           607..2577
FT                 /product="Jockey-1_DGri_1p"
FT                 /translation="MSNTPPTSTAGDAPDTAATVSWCSPSLARLTSEHRYN
FT                 LRTRLISSNNNNATKLANANSANSHNNNINKNTVNNKSNAHKSILCNKNAN
FT                 NNNTGSNNNANTNVNNANSNNNNASTNNNLNYNNPNKKRKIATILEEIDLD
FT                 AVPSTSAGVRAAPQALEDLLSDSDADVDLVDMEEVPASPIYPPSASTRNEV
FT                 ASDEELHLSASAEIRDCSQFNAPISDTVEDRPTRHAKPPPLIAEGITNVAG
FT                 LLQALNDVTPPDSFMLKCNGGGTVRVMPNGIDAYRAIQRLFTDKRIPFHSY
FT                 QLKEDRGFRVVIRGLHPSLQKMDLIRDELGRLGHAVRGVQTIFSRATKKEL
FT                 NLCYLELEPATNNKEIFNLRSISQVRISVECPDRHTDIPQCHRCQEFGHTM
FT                 KYCQKQHRCVKCGSAHASRVCEKPLDADPKCANCGGNHPASWKGCLAYQRV
FT                 AKERKLVAQSRRPAQDPQKSRPRSPAPIRRENFSYADAARLQMAPQTPQQQ
FT                 QQRHCQQQVHPEQQQPRQRPQQQQQQLSSVHQVTPQVPKQQHKKKAQRHKT
FT                 RQMLRLRERIEKQNKHSQQHQQQLRQQQQRHQQQITQQERQQPRQHNQHQQ
FT                 PQRQHHQQPPQQQFQLVQQPYLYHEHSQLLFDSLMSKFDKLSETLTAMMSL
FT                 LHDALANR"
FT   CDS           2577..5276
FT                 /product="Jockey-1_DGri_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLRIGVWNANGLANNANELELFIQRHQIDVMLV
FT                 CETHYCSRSHYRLPGYDIHLANHPSDRMRGGAAVIIKSSLRHHALNSLSLL
FT                 CAQCAVVKVSSDQGEVVLAAVYCPPRFVWEIEDYKCLFEELGPKFLIAGDW
FT                 NAQHHLWGAALDTRRGIALADCVRDSNLQVLATGGATHYSYGNHRPTAIDF
FT                 AVYAGIRSDCLGISERIELNSDHIPLIVEYRVAAALNAPKTRLLPRKANIT
FT                 RFRQRLEQLVNLNMELSSPADIDDAAELFLRNINVAAEYSMLGQLPCSPPS
FT                 PAQPLLKPEILDLVRHKRALRRQYMRSRNPLDLRDFRRAAYELRKLLFVTK
FT                 SKYFQDMLRNADPNKNHGFNLWKATRCVKRQPLRRIPIMRPDNTWCRSDAD
FT                 IASAFADELQSRFTPFALASPSQVQDTEAFLNADLDPVQPITTIAPTEVRL
FT                 QIRRLKSTKAPGYDGIDGKVAKALPEKGVMFLVLLFNSMVRIHHFPTPWKC
FT                 AVIAMIPKPGKPDNLVSSYRPISLLSTFSKIFEKIFLGRLSAVSGFQRAIP
FT                 DHQFGFRHHHGTPEQVHRVVQHVLEALENKQYSSAVFLDIQQAFDRVWHDG
FT                 LLFKLKSLLPSAQYLLLRSYLLGRSFMVEVRGERSNIRPIGAGVPQGSVLG
FT                 PALYTLYTADLPIPVARNTLLATYADDTVFLANSTTAWRAAAVTQRFLDGF
FT                 SSWANRWNICVNGSKSQHCTFALRNGNCPTVRLNNTVIPQENHVRYLGMFL
FT                 DRKLTWRKHIHITAAACRSKKTKLNWLLKPSSKLSLSNKLLVYRSIILPTW
FT                 TYGIPFWGTAAKSWINQIQVLQNKVLRDISGAPPYVSNRTLHNDFGLLTVS
FT                 QQINRHTSRYNDRLHNHVNPLACSLGSNTTRRRLKRLHTSDLWTVGR"
XX
SQ   Sequence 5490 BP; 1508 A; 1408 C; 1229 G; 1344 T; 1 other;
     cagtcatcat cttagcttcg tcgagcgcga atgtgtattt tggtggctgc gataatttgt        60
     gcattattca ttgacaatca ctaaaattag tggcaacatt aacgatatta atgtcgtata       120
     aaatactaac agtattcctg tgttttaaaa taaaaaaaat atgtgctaaa ttcgcgcaaa       180
     tataaaacta cgcgcaatca aaacaataac aaataacaaa agcaaagtgc atgcgctctt       240
     gctcagtgcg ttgccctttt tctaattttg ctctgcctgt ttttgtaccg ctgagagttc       300
     acgtcgagct taagcttgat tatctcgtcg tgtcccatgc acttttccgt cggtggcccg       360
     ctcatctttc tccagtgcta atacgaacgt cgcgcgcagc tggtctgcta gttcccttgt       420
     atcggcactt gtacgtgtga gcgtgcgtgc tatttatctc ccgctctctc aaattatcga       480
     tgctcgcgaa caatactgca ggtcatttac gatttttgtg agagtcgttt aactagtgca       540
     atttgtgcgt gcgccgcgac cactcttcta gagtgagtgc gcttggtgcg cgccaattgc       600
     aaaattatga gcaacacccc tcctacctct actgccggcg atgcgcctga caccgcagct       660
     accgtttctt ggtgctcccc ttcactcgcc aggctgacca gtgaacaccg ttacaatctg       720
     cgtactcgcc tgataagcag caacaacaac aatgcaacaa aattggcaaa tgccaacagt       780
     gctaacagcc acaacaacaa catcaacaag aacactgtca acaacaaaag caatgctcac       840
     aaaagcattt tatgcaacaa aaatgccaac aacaacaaca ccggctctaa caacaacgcc       900
     aataccaacg taaacaatgc caacagcaac aacaacaacg ccagcaccaa taataattta       960
     aattacaaca atcccaataa aaagaggaaa attgctacaa tcttagaaga aattgatttg      1020
     gatgcagtgc cgtcaacttc tgctggagtt cgtgcagctc cacaagccct cgaggatctg      1080
     ctgtcagatt cggacgccga tgttgatttg gtcgacatgg aagaggtgcc tgcttcacct      1140
     atatacccgc cgagtgcgtc cactcgaaat gaagttgcgt ccgatgagga gcttcattta      1200
     agtgcttctg ccgagatacg cgattgctcg caattcaacg caccaatctc tgacactgtt      1260
     gaagatcggc caacaagaca tgctaaacct cccccactta ttgctgaggg tattaccaac      1320
     gttgctgggc tcctgcaagc attaaatgat gtcacgccgc ccgacagttt catgctcaaa      1380
     tgcaatggtg gtggcactgt aagggtaatg ccaaatggta ttgatgccta cagagcaata      1440
     cagaggttat tcacagacaa gcgaatcccg ttccattcgt accaactgaa agaggacaga      1500
     ggtttccgcg tggtgatcag gggactgcat ccatccctgc agaaaatgga tctcattaga      1560
     gatgagctgg gcagacttgg gcacgcagtg cgtggtgtcc aaaccatctt tagtcgsgct      1620
     accaagaagg agctgaatct ttgttatttg gagttggagc cggctacaaa taacaaagaa      1680
     atcttcaacc tacgctccat ctctcaagtg cgcatttcag tagaatgccc tgatcgccac      1740
     acggacattc cccagtgcca ccgttgccag gagttcggcc acacaatgaa atactgccaa      1800
     aagcagcatc gctgtgtgaa gtgtggctca gcacatgcta gtcgggtatg cgaaaaacct      1860
     ttagacgctg acccgaaatg tgccaactgc ggtggtaacc atccagcaag ctggaaggga      1920
     tgccttgctt atcagcgcgt tgccaaagaa cgaaagcttg tggctcagtc acgaaggccg      1980
     gcccaagatc ctcaaaagtc gcgtccaaga agcccggcac ccattcgcag ggaaaatttt      2040
     tcttatgctg atgctgccag acttcaaatg gctcctcaga ctccgcagca acagcaacag      2100
     cgtcactgtc agcagcaggt tcatcctgaa caacagcagc cccgccagcg accgcaacag      2160
     cagcaacaac aactctcatc ggttcatcaa gttacaccgc aggttccgaa acaacagcac      2220
     aaaaagaagg ctcaacgtca caaaactcgc cagatgctta ggcttcgcga gcgcatagag      2280
     aaacaaaata agcactcaca gcaacaccag cagcagcttc gccagcagca gcaacgccat      2340
     cagcaacaga tcacacaaca agaacggcaa caaccacgtc agcataacca acaccagcag      2400
     ccacagcgcc agcatcatca gcagcccccg cagcaacaat ttcagctagt gcagcagcct      2460
     tatctgtacc atgagcactc ccagctcctt tttgacagtc tgatgtcgaa attcgacaag      2520
     ctgagtgaga cacttacggc tatgatgagc ctgttgcacg atgcacttgc aaatagatga      2580
     gtcaaatagg gttgcgcatt ggcgtgtgga acgccaatgg ccttgcgaat aacgccaatg      2640
     agctggagtt atttattcaa cgccatcaaa tagatgtaat gttggtctgc gagactcact      2700
     actgctccag atcgcactac aggcttccag gctacgatat acaccttgcc aatcatcctt      2760
     cggatcgcat gcgtggcgga gcagcagtga tcataaaatc ttcactgcga catcatgcgc      2820
     tgaactcatt aagtttgcta tgcgcgcaat gtgctgtcgt taaagtctct agtgatcaag      2880
     gcgaagtagt cctagcggct gtctattgtc caccacgttt tgtgtgggaa atagaagact      2940
     ataaatgtct cttcgaagag cttggcccaa agttcctgat tgctggagac tggaatgctc      3000
     aacaccatct ctggggtgca gcgttggaca ctcgacgtgg gatcgcgctt gcggattgcg      3060
     tgagagactc caacctccaa gtacttgcca caggaggtgc aacgcactat tcgtacggca      3120
     accataggcc aacagcaatt gactttgctg tgtacgctgg gatccggtct gactgtcttg      3180
     gtatatccga gcgaattgag ctaaactccg atcacatccc tttgatcgtt gagtacagag      3240
     tggctgcagc tctgaatgct cccaagacac gccttctgcc acgcaaggca aacatcaccc      3300
     gattccggca gaggttggag cagcttgtaa atttgaacat ggagctgagt tcaccggctg      3360
     atattgacga cgcagcggag ttattcctgc gtaatattaa cgtggcagcg gaatactcca      3420
     tgcttggcca actaccttgt tcgcctccca gtccagccca gcctctttta aaaccagaga      3480
     ttttggatct ggtaagacac aagagagcac tgcgtcgtca atatatgcgc tcacgcaatc      3540
     ctttggatct aagggacttt aggcgggctg cgtacgagct gcgaaagctg ctgtttgtca      3600
     ctaagagcaa atatttccaa gatatgctcc gcaatgccga tcccaataag aatcatggat      3660
     tcaatttgtg gaaggcaacg cgttgtgtca agcggcagcc actcaggcgg atccccatta      3720
     tgcgacctga caacacttgg tgtcgatcgg atgcagatat tgcatcggcg tttgcggacg      3780
     agctgcaaag tcgttttacg ccctttgcac ttgcatcgcc cagccaggta caggacactg      3840
     aagcattttt aaatgcagat ctagatcctg tacaaccgat cacaactatc gcccctactg      3900
     aggtccgctt acagattcgc aggcttaagt ccactaaggc ccctggctat gatggcattg      3960
     acggcaaagt tgctaaggcc ctcccagaga agggagtgat gttcttggtg ctacttttta      4020
     actccatggt tcgcatccac cacttcccca ctccgtggaa gtgcgctgtg attgcgatga      4080
     ttccgaaacc tggcaagccg gataaccttg tctcgtcata tcgaccgata agcttgctgt      4140
     ccactttctc caaaatattt gaaaaaatat ttcttggaag attgtcggca gtaagtggct      4200
     tccagagggc cattcctgat catcagtttg gcttcaggca tcaccatggt acaccagagc      4260
     aagttcatcg agtagtacag cacgtcctcg aggccttgga aaataagcag tacagctctg      4320
     ccgtcttcct ggatatccag caagcatttg atcgcgtatg gcatgatggc ctgcttttta      4380
     agcttaagtc cctgctacca tcagcgcagt atttactgct caggtcttac ctgcttggcc      4440
     gttcttttat ggtagaagtt aggggcgagc gatcaaacat ccgccccatt ggagctggtg      4500
     taccacaggg tagtgtcctt ggacctgcct tgtacacttt gtacaccgcg gacttgccga      4560
     taccagtagc cagaaacacg ctgcttgcca catacgcgga tgatacagtg ttccttgcta      4620
     actccaccac tgcttggaga gcagctgcgg ttacgcagag gttcttggat ggttttagta      4680
     gttgggccaa ccggtggaac atttgcgtta atgggagcaa gtctcagcac tgcacgttcg      4740
     cgctcaggaa tggtaattgt ccaactgtcc gactcaataa cacggtcata cctcaggaga      4800
     accatgttcg ctacctcggt atgttcttgg acaggaaact tacctggcgc aaacacatcc      4860
     atatcactgc agcagcgtgt agatccaaaa aaactaagct caactggttg ctgaagccat      4920
     caagcaaact cagcttgagc aacaagctgc tggtgtacag gagcatcatc ttgcctacat      4980
     ggacatatgg aatcccattc tggggcacag ctgcaaaatc ttggattaat caaattcaag      5040
     tcttgcagaa caaggtgctc agagacatct ctggtgctcc accatatgtg agcaacagaa      5100
     cgctgcacaa cgacttcgga ttgctgacag tcagtcaaca aattaacaga catacgagtc      5160
     ggtataatga ccggttgcac aaccacgtca accctttggc ctgctcactt gggtcgaata      5220
     caacacgcag gaggttgaag cgcctccaca ccagcgacct ctggactgta gggcgttaaa      5280
     taaatgtgcc gcaaatgtaa ttcttgatat tatttattat tattatttat tataaaacct      5340
     gtctcatgtt tatgttatag attgtaattc atttatgtta tagattgtaa ttcactgtca      5400
     ttattcattc tgttacaaat caatgtttta tagcctttga ataggttgat taatgtttaa      5460
     aatataaatg ccacattaaa aaaaaaaaaa                                       5490
//
ID   Jockey-1_DHyd repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila hydei genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4438
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2453-2453 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1580
FT                 /product="Jockey-1_DHyd_1p"
FT                 /note="zinc finger."
FT                 /translation="MTSNVNNLATAVKVNAEMQAQLNVVMANRQASIMPIN
FT                 SKIDIASVQGITNNKNTKRKQPNSPKTIKKRLIFDEPSTSNAALISENRFS
FT                 LLVEEDEDYSESPVAPEAPVLTDQQTTPKPRPPPIWCPNIKSVALLQQIID
FT                 KVIDAKSYVIKPKKNNIGVLTQCSEDYRRVIDHFTKLELEFHCYQLKEDKP
FT                 YRVVFKGLHSSTDTTLIKKELETKGHTITNVHNPLSRMDKTPLNIFFVDVA
FT                 QAPNNKEILDIRVVCRQRCTVELPRRYNDLTQCHRCQEFGHTQRYCHKAPR
FT                 CVRCAGKHASKDCTREKDQAPTCVHCELQHPANYKGCQVYKRLRKLQSPAQ
FT                 KRSPTQTPSTGPSTASEITRPRSITQATSFATPISGVSYAQAARGGPSNKN
FT                 TTSDTLFTEMLQQQQRQFDAINAELKAMREVQSQQATMLNSLMAIITKLAY
FT                 K"
FT   CDS           1583..4276
FT                 /product="Jockey-1_DHyd_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MALRVGIWNANGLRNKTQELAAFLSQENIDIMLITET
FT                 HECPTTQIFGYEHYQAHGEGANCFGGSSILIRATIPHTPLLPICNATMQVS
FT                 AITLPTSIGAIEVASIYLPPNTGLCDHHMEQVLGQRLNKTLIGGDWNGWHP
FT                 FWGSNSANRRGEVIFEAIQNLQFSILATGAPTRYPINGHRPSAIDFAVYKG
FT                 ICDRQLTIEESLDLSSDHLPLIVTIHAQPQPLPIRKQLLPAGSDLGVFRRE
FT                 LHYSLHIEMELNTPEDVDYAANKLQEEIVKAAHQAAPPSCQTRQQSPYNIP
FT                 LTLEAQHLLIHKRWARRRWLRLRTPDAKSMYNEATRHLKAALALLQKRCIS
FT                 DALVRAESPTDAEFQLWKFTRKLKRQPIRRHPIRSISGSWHIGDEAQAEAF
FT                 ANHLQDQFTPVITAEASEIEATEDIVLSPLPAEDQITGCTKEEVLEHIRRV
FT                 KAKKSPGYDLINGRVLRALPDSTIDYITMVYNAMLRIRHFPACWKRAVIVM
FT                 IPKPGKPVGEIESYRPISLLPVLSKIFERIFLERVLTHLGRQEAIPNHQFG
FT                 FRRQHGTPEQVHRVVHHILGAFEEKMYCSAVFLDIKQAFDRVWHLGLLQKV
FT                 RTTLPAPFFALLSSYLIGRTFQVSRGQTVSLTRPIMAGVPQGSVLGPTLYT
FT                 LFTGDMPTPEPNIGSTDAVLIATYADDTAILSRHVSAQEASDSLQKYLDSF
FT                 GRWAKRWCITINAQKSVHTTFATRRGDCPSVALGPTIPKASKVKYLGITLD
FT                 RRLTFKAHISQVTSKCKSKLKTLDWMLRASSKLSYSSKAAIYKAIVVPTFV
FT                 YGISLWGSSAKTTRNKIQTLQNKALRRWTGASWFVRNSVLHRDLAIPTVAE
FT                 LIGRHSSRYADRLAAHPNHLASNLAINNNRRRLKRLHPLDNIRTN"
XX
SQ   Sequence 4438 BP; 1432 A; 1139 C; 916 G; 951 T; 0 other;
     caatcgcgat cagtcgttcg acctgtaaag acgtgaattc gaacagcctt cgcttaagct        60
     ctactgctgc agagttctaa aaatagaact ttgcggtgca ttcttcaacg caacagcaac       120
     aaaaaccgca cacgcagcgt tttcttatcg cttgcttccg cgtaactcaa ttgctttaat       180
     tgcaatttac gaaatttcgt cgcttggcgc gagtgcgcct gcactcaaaa gcacaatccg       240
     cgatgacatc taatgtcaat aacctcgcta cagctgtaaa ggtaaatgca gaaatgcaag       300
     cccagcttaa cgttgtgatg gcaaataggc aagcctccat catgccaata aactcaaaaa       360
     tagatatcgc ctccgtgcaa ggcatcacta acaacaaaaa cacgaaacgt aaacagccaa       420
     attcaccaaa aaccatcaag aaaaggctca tcttcgacga accaagcacc agcaatgcag       480
     cattaatatc agaaaatcga ttttcactgc tcgtagaaga agatgaagac tacagcgaat       540
     cacctgtagc tccagaagcc ccagtattga ccgaccagca aactacaccg aaacctcgtc       600
     cgccccccat atggtgtcca aacatcaagt ctgtggccct acttcaacag ataatagata       660
     aagtaattga tgctaaatca tacgtaatta agccaaagaa gaataacata ggtgtattaa       720
     cccaatgcag tgaggactat cgcagagtta tagaccactt tactaagctg gaattggagt       780
     tccactgcta ccagcttaag gaggacaaac catatagagt cgtgttcaaa gggcttcact       840
     ccagcactga tacaacacta attaaaaagg aattggaaac caaaggccac acaattacaa       900
     atgtgcacaa cccactgagc cgtatggaca aaacaccgct aaatatattt tttgttgacg       960
     tggctcaggc ccccaacaac aaagaaattt tggacattcg agttgtctgc aggcaacgct      1020
     gcacagtgga actgccaaga agatacaacg acctgacaca atgccatcgc tgtcaagaat      1080
     ttggacacac acaacgctac tgccacaaag ctcccagatg tgtgcgttgc gccgggaaac      1140
     acgcatccaa agactgcacc cgcgaaaagg accaggcacc aacttgtgtg cactgtgagt      1200
     tacagcaccc agccaactat aagggctgcc aagtatacaa gcggttgcgc aaattgcaat      1260
     ccccagcaca aaaaaggagt cccacacaaa caccgtctac gggtccgagt actgcttccg      1320
     aaattacaag gccccggagc attacccaag ccacgagctt tgcaacgcct attagtggtg      1380
     tttcttacgc acaggccgct agaggtggac cgtcaaataa gaataccaca agtgacactt      1440
     tgttcactga aatgcttcag caacaacaac gtcagtttga cgcaattaat gccgagctca      1500
     aagcgatgcg agaagtacaa tcccaacaag caaccatgct aaacagttta atggccatca      1560
     taaccaagct tgcctacaaa taatggcttt acgtgtgggt atctggaacg ccaatggcct      1620
     gagaaacaag actcaggaac tggctgcgtt tctctcacaa gaaaacatag atataatgtt      1680
     aataacagaa actcatgagt gccccactac acaaattttc ggatacgaac actatcaggc      1740
     tcatggtgaa ggagcaaact gctttggtgg atcctcaatc ctcatacgag caacaatacc      1800
     gcatacacct ttactgccaa tttgcaacgc aacaatgcag gtctcagcca tcaccctgcc      1860
     tacgtctatt ggagcgatcg aagttgcgtc aatttatctt ccgccaaaca ctggtctgtg      1920
     tgatcatcac atggaacagg ttctaggcca aaggttgaat aagaccctca tcggcggcga      1980
     ctggaatgga tggcacccat tttggggaag caatagtgcg aatcgtcgcg gagaagtcat      2040
     atttgaggcg attcaaaact tacaattcag catattggcg actggagccc ccacccgtta      2100
     cccaattaat ggacacaggc cctcggcaat cgacttcgct gtctacaaag gcatctgtga      2160
     ccggcaattg accattgaag aatccttgga cctatcctct gaccacctgc cactaatagt      2220
     cacaatccac gcgcagccac agcccttgcc cattaggaaa caactactgc cagcaggatc      2280
     agatttagga gtctttaggc gcgagctcca ttactctttg cacatagaaa tggaacttaa      2340
     cactcctgaa gacgtggact acgcagcaaa caaactgcag gaagaaatag tcaaagctgc      2400
     gcaccaagcc gccccaccat cttgccaaac aagacaacag tctccgtaca acatccccct      2460
     caccttggag gcccaacacc tactaataca caaaagatgg gccaggagac gctggttaag      2520
     attacgcacg cctgatgcca aatccatgta caacgaagcc acgaggcatc ttaaagctgc      2580
     tctcgccctg cttcaaaaga ggtgtatcag cgatgcgctg gtacgagctg aatcgcccac      2640
     tgacgcagag tttcaattat ggaaatttac aagaaagctc aaacggcagc caatacgacg      2700
     tcatcccatt cggagcattt ctggttcctg gcacattgga gacgaagctc aagctgaggc      2760
     ttttgcaaac caccttcaag accaattcac gccggtgatt accgcagagg cctcagaaat      2820
     cgaagcaaca gaagacatcg ttctctcgcc cctcccagct gaagaccaga taactggatg      2880
     tacaaaagaa gaggttcttg aacacatcag aagagtgaag gcaaaaaaat cccctggata      2940
     tgatctaata aacggcagag tccttagagc actgcctgac tccaccatag actacataac      3000
     tatggtgtac aacgccatgc tccgcatccg gcactttcca gcctgctgga agcgcgccgt      3060
     gattgtgatg attcctaagc ctggcaaacc cgtgggagaa attgagtcgt acagaccaat      3120
     tagcctgttg ccagtactct ccaaaatatt cgaaagaata tttctggaac gagtactgac      3180
     acatctggga cgccaggagg ccattccaaa ccatcagttt ggcttcagga gacagcatgg      3240
     aacaccggaa caggttcaca gagttgtgca ccatatcctt ggagcctttg aagaaaagat      3300
     gtactgctct gccgtctttt tagacatcaa acaggcgttt gatcgagttt ggcacctggg      3360
     actgctgcag aaagtgagga ccacccttcc agccccattt ttcgcgttgc tatcctcata      3420
     ccttattgga agaaccttcc aagtgtcaag ggggcaaaca gtatccttga ctagaccaat      3480
     tatggctgga gtaccacagg gtagtgttct aggcccaaca ctttatactt tattcacagg      3540
     agatatgcca actcccgagc caaatatagg aagtacagat gcagtactca tagcgaccta      3600
     tgcagatgac accgccatct tatcacgtca cgtatctgcg caagaagctt cagactcact      3660
     acaaaaatat ctggactctt tcggacgctg ggcaaaacgg tggtgtatca ccattaatgc      3720
     acaaaagtct gtacatacta ccttcgccac tagaagagga gattgcccaa gcgttgcatt      3780
     ggggcccact attcccaaag cctcaaaagt aaagtacctt ggtatcactc ttgacagaag      3840
     gctgactttt aaagcgcaca taagtcaagt aacctcaaaa tgcaaaagca agctaaaaac      3900
     cctcgactgg atgctgagag cttcaagcaa gttgtcttac agcagcaagg ccgccatcta      3960
     caaggcaata gttgtcccaa ccttcgtata tggtatctct ctatggggct cctcggcgaa      4020
     gactacaagg aacaaaattc agaccctgca gaataaagca ctacgcagat ggactggagc      4080
     cagctggttt gtaagaaact cagtcttaca tagggattta gcaattccca cagttgctga      4140
     actcattggg cgacacagtt caagatacgc ggacagactt gcagcgcatc ctaaccatct      4200
     cgcaagcaac ctggctataa acaacaatag gcgaagactg aagagattgc atcctctaga      4260
     caatattaga actaattaag atagtagcta caagtgcaga ataattggca tatctgccct      4320
     cccattagtt aaggtttaga gctaaatgcg ctatagagtc taagacaata agctgcaaca      4380
     aaataaagaa ataaaaacga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa        4438
//
ID   Jockey-1_DK repbase;    DNA;    INV; 4935 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.07, Created)
DT   03-JAN-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4935
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1338-1338 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..2184
FT                 /product="Jockey-1_DK_1p"
FT                 /translation="MSAESDLDIEKIAAEAQKKMREALNSSINQFNAIYAS
FT                 TSNNARPVATQDSEQDAMADDDDWWTPRPNNKRRLRSSPYNSSSKIIRNSN
FT                 SPKPAASDNRFSDLSDMDTDDEIMKSPQTVGQNRSNQASISTSNASNTTNT
FT                 SNTTNASNTTNASNQVSNTLTNNLSNSGNTCNSNNSNTTSCNGSPNQPSDN
FT                 NETSPSHKPPPIVVKNCENLNGLIRSTDKVVHPTKYSIKCHPDNSVSILAS
FT                 DSDAYRAITKSLTSKKVPFHTWQLKEERSYRIVIRGVHHSIPDEDIKESLT
FT                 SLGHTIRFINRPRSRFDKTKLVNLVFVELEPAANNKEIHELKTLCRQRIQV
FT                 ELPFKKDVVVQCYRCQSYNHTKNNCHKEVNCVRCGQQHSIEDCQRDVHPVK
FT                 CYNCGGNHTASYKGCIVYQQTVSRRKTATSHRSPHQQQQVTAPTARRGIEP
FT                 SLSYGYVAGGSRQTQQASPQQFTSQQQLQQFPPLGSRYRKQNQQSQRRENN
FT                 RQPQQPMLDTIPRPEQHPGTQQQQQPQQQNLSQQLRNIQNNQQWQRQEEMF
FT                 MRSDEKMSVLVTQLEKMFQMMMSMMTLVTSLLSQNAPGSTQPSSGRLPVYP
FT                 IQP"
FT   CDS           2184..4907
FT                 /product="Jockey-1_DK_2p"
FT                 /translation="MSQIGLKIGVWNADGLANKALELELFVHKHHIDIMLV
FT                 SETHFCSRSYYKLHGYDVHLSNHPADRHRGGSAVIIKSCLKHYQFLTMEHQ
FT                 SAQCVAVKVNTDQGEIAIASIYCPPNFQRSYDDIRTLFEELGPKFLIAGDW
FT                 NAHHRLWGCRNSSVSGRVLANYILSSHIQVLATGGPTHYPYSQRTPTAIDF
FT                 AIYGGIRSELLSISGSLELCSDHIPLLIELRSAAFKVSQKTHILPRNANIP
FT                 RFQAAINQLVNLNMVLRSPEDIDDATEVFVRNIHIAAESSTXGQGSINPSD
FT                 PPHALLKPEVLDLVRSKRALRRRFMRSQNPADKRAYRRAENDLKKLLHKTK
FT                 NDYFSDLLRNADPTKPYGFNLWKAAKSVKRQPPRRIPIKRADNTWCRSDAD
FT                 ISLAFADELEGRFQPFDLARSEDVEATLAFLNTSCPDVEPIRHVSPEEVCL
FT                 QIKKLHVSKAPGFDGIDNRVAKALPKKGILFLVLLFNSMLRIYHFPTQWKC
FT                 AVISMIPKPGKPENLVASYRPISLLPTFSKIFERIFLSRMMAVRSVQDAIP
FT                 DHQFGFRNHHGTPEQAHXVTQHILDAFENGQYSSAIFLDVKEAFDRVWHNG
FT                 LLFKLKTLLPTAQYLLLKSYLLERKFMVDVRGERSSIRSSRAGVPQGSVLG
FT                 PVLYTLYTSDLPNPREPGTLLATYADDTAFIANSACRIEASRKTQSFLDTY
FT                 SEWTKRWNISINGNKSQHCNFSLRHKILPRVKFQDTLIPQSPQAQYLGLIL
FT                 DKRLTWRQHTTKIAAACRGKLRKLNWMLKSTSKLSLSNKVLLYKAIVVPAM
FT                 TYCIQIWGTASDSNVMKVQRVQNRALRTITNAPWFARNADIANDLKMLPVR
FT                 EQINRHSSRYNERLLAHTNHLAASLAIPMSRRRLKRRHPGDLWLRGRQRTR
FT                 VLHQ"
XX
SQ   Sequence 4935 BP; 1525 A; 1259 C; 1017 G; 1131 T; 3 other;
     agcagctttg cgttagctgt caaaggcntc ggacgtgttt tcggctatta aaaaagaaaa        60
     aggggaaaat acaaaaattt ctcatgcttt cgtgaagtgc agacgcgttt ttgcattgtg       120
     aagagtctat ggacaagtcc acctttgtgg caaaagcgac tgtgtttttt ctaaatccga       180
     cttctaagga cgtggtgtca gtgcccccac gttccgctat ttctgtcaat tgcgaaaaca       240
     aagtgaaacg aaagacaagc ctaatagctg taatagttcc gggtgccgcc cggttgcggg       300
     tcgcgcgtat tcgccactcg gtctcaatcg cctttgtgaa gccttcccaa aaggtcccgt       360
     agtcggtaaa gcaagttcac tatgtctgct gaatcggatc ttgacatcga aaagattgcg       420
     gctgaggccc agaaaaaaat gagagaggcg ttaaattcct cgataaacca atttaacgcc       480
     atttatgcct cgacctctaa taatgctcgg ccagtagcaa ctcaagactc tgagcaagat       540
     gctatggctg atgacgacga ttggtggacc ccacgtccca ataataaacg ccgtttaaga       600
     tcaagccctt acaactcaag ctcgaaaatt attaggaatt caaatagccc aaaaccagca       660
     gcatctgaca atcggttctc ggatctgtca gatatggaca cggacgatga aattatgaaa       720
     tcaccacaaa cagtcggtca aaatagatcc aaccaagcca gtatcagcac cagcaacgcc       780
     agcaacacca ccaacaccag caacaccacc aacgccagca acaccaccaa cgccagcaac       840
     caagtcagca acactctaac caacaattta agcaacagcg gcaacacctg taacagcaat       900
     aatagcaata cgactagctg caatggtagt ccaaaccagc cctcagacaa caacgaaacc       960
     tcaccgtctc acaaaccacc accaattgtg gtcaaaaatt gtgaaaactt aaacggactt      1020
     atcagatcca cagataaggt cgttcaccca accaaatatt ccattaaatg ccacccagat      1080
     aattccgttt cgatcttggc ttcagattca gatgcgtaca gagccattac taaatcgctt      1140
     acctcaaaaa aggtgccatt tcatacctgg caacttaaag aggaaaggtc ttaccgcatt      1200
     gtcatccgag gtgtgcatca ctccattccg gatgaagata ttaaggaaag ccttacttca      1260
     cttggccata ctatccgctt catcaataga cccagaagcc ggttcgataa aacaaagctc      1320
     gtcaaccttg tctttgttga attagaacca gccgccaaca acaaagaaat acatgagctt      1380
     aaaacgcttt gtcgtcaacg gatacaagtt gagcttcctt tcaaaaagga cgttgtcgtg      1440
     caatgctatc ggtgccaatc ttacaatcac acaaaaaata actgtcataa ggaagttaac      1500
     tgtgtaagat gtggtcagca acactccatt gaagactgcc aacgagatgt acatccagtt      1560
     aaatgctaca actgcggcgg taatcatact gcaagctata agggctgtat cgtataccag      1620
     cagacagtaa gtcgacgcaa aactgctaca tcccatcgta gcccccatca acaacaacaa      1680
     gttacggctc caactgcacg aagaggcatt gagccctcgc tatcttacgg gtacgtcgcc      1740
     gggggatctc gccaaacaca acaggctagc cctcagcaat ttacaagcca acagcagctg      1800
     caacaattcc caccactagg aagtaggtac cggaagcaga accaacaaag tcaacgtagg      1860
     gaaaacaacc ggcaacccca acaaccaatg ctggacacaa tcccaaggcc agagcaacat      1920
     ccaggaaccc agcaacagca acaaccgcaa cagcaaaatc tatcccagca actgcgtaat      1980
     atccagaata atcagcaatg gcagcggcaa gaagaaatgt tcatgcgatc tgacgaaaaa      2040
     atgtcggttc tcgtaacaca actagaaaag atgttccaga tgatgatgtc gatgatgact      2100
     ctcgtcacta gccttttatc acaaaacgcg ccaggatcta ctcaaccaag ttctggacgt      2160
     ctcccagttt atccaatcca accatgagtc aaattggact caaaattggt gtgtggaacg      2220
     ccgacgggct ggccaacaaa gcactggagc tagagctttt tgttcataaa catcacatag      2280
     atattatgtt ggtcagcgaa acacacttct gctctcgttc atactacaaa ctacacggat      2340
     atgacgttca cctatctaac catcccgccg atcgccaccg tgggggctct gcagtcatca      2400
     taaagtcctg tctcaaacac taccaatttt taacaatgga acatcaaagt gctcaatgtg      2460
     tcgcagtcaa agtcaatacg gatcaaggtg aaattgctat tgcctctatt tattgtcctc      2520
     caaacttcca gcgctcctat gatgacatta gaacactgtt tgaggaacta ggacccaaat      2580
     ttctaattgc cggtgattgg aatgcacacc atcgactttg gggttgtcga aattcctctg      2640
     tcagtggaag agtattggca aactatatcc tcagctctca cattcaagtc cttgcaaccg      2700
     gaggtcctac ccactacccg tacagccagc gtacgccaac tgcaattgat tttgccatat      2760
     atggggggat tcgctctgag ctcctatcca tctcagggag cttggaactt tgttctgatc      2820
     acatcccctt gttaattgag ctaagaagtg ctgctttcaa ggtctcccaa aaaacacata      2880
     ttctccctcg aaacgcgaac attccacggt ttcaggcagc aattaaccag ctagtaaacc      2940
     tcaacatggt cctgagatcc cctgaagaca ttgatgacgc cactgaggtc tttgtgcgaa      3000
     acattcacat tgctgccgaa tcttcaaccn gtggacaagg ctcaataaac ccatcagatc      3060
     cacctcatgc tcttttaaaa cctgaggtcc tggatttggt gaggtcgaaa agagccttgc      3120
     gtcgcagatt catgcggtcg caaaatccgg ccgacaaaag agcatatcgt cgcgctgaga      3180
     acgatctaaa gaagttgctg cataagacga aaaatgatta tttctcagat ctactacgca      3240
     atgcagaccc cacaaaaccg tatggattta acctctggaa agcagcaaag tcagttaaac      3300
     ggcagccccc acgcagaatc cctataaagc gtgctgacaa cacttggtgc agatcggatg      3360
     cagatatttc tctggctttt gctgacgaac tagaaggtcg atttcagccg tttgaccttg      3420
     ctaggagtga ggacgtggaa gcaacactgg cttttcttaa tacttcctgc ccagatgtag      3480
     agcccattcg tcatgtaagt ccggaagaag tttgtctcca aattaaaaaa ctgcacgtta      3540
     gtaaagcacc aggatttgac ggaatcgata atagagttgc caaagctctg cccaaaaagg      3600
     gcatattatt ccttgtgctc ctgttcaact ccatgttacg tatctaccac ttccccacac      3660
     aatggaagtg cgcagtgata tcgatgatac ctaagccagg caaaccggag aaccttgttg      3720
     cgtcttaccg gccaataagc ttgctgccaa cattctctaa aatattcgag agaatatttc      3780
     ttagcagaat gatggcagta agaagtgttc aggatgccat tccagatcac cagtttggct      3840
     tccggaatca ccatggaacg ccagaacagg ctcatngagt aacgcagcat atcttagatg      3900
     cttttgaaaa cggtcagtac agctctgcta tcttccttga cgtaaaggaa gccttcgata      3960
     gagtgtggca caatggattg ctttttaagc taaaaacact cctaccaact gctcaatatc      4020
     tccttctgaa atcgtacctg ctggagcgaa aattcatggt tgatgtgaga ggtgaaagat      4080
     catccattag aagcagtcga gctggagtac cgcaagggag tgttttgggt cctgtgttat      4140
     acacccttta cacctctgac ttgcccaatc ccagagaacc ggggacactt cttgcaacgt      4200
     atgctgatga cacagccttt atcgcaaact cagcgtgtcg aatcgaggct tctagaaaaa      4260
     cgcaaagctt tttggataca tatagcgagt ggacgaagag gtggaacata tccataaatg      4320
     gaaataaatc gcaacactgc aatttttccc tgagacacaa aatcctccct agggtcaaat      4380
     ttcaggacac gctaattcct caatctcctc aggcccaata cctgggattg atcttggata      4440
     agcggctcac gtggaggcaa cacaccacca aaatagcagc agcatgccgt ggaaaactca      4500
     gaaagctaaa ctggatgcta aagtccacca gcaagctgag cctcagcaac aaagtgctgc      4560
     tatacaaagc aatagttgtt cctgctatga cctattgcat ccagatatgg ggtactgcgt      4620
     ccgactctaa cgttatgaaa gtgcaaaggg tccaaaaccg ggcgctgcgc acaatcacaa      4680
     atgcaccctg gtttgctagg aatgcagaca tcgctaacga cctcaaaatg ctaccagtga      4740
     gggagcagat caacaggcac tcaagtcggt acaatgaacg gcttctggcc cacaccaacc      4800
     acctagcggc atcattggcc atccccatgt ccagacgaag actgaagaga cgacatccag      4860
     gtgacctttg gttaagaggg aggcaaagaa cccgagtcct acaccaataa ctgaaatgcc      4920
     tttgtaaatt ataaa                                                       4935
//
ID   Jockey-1_DMo repbase;    DNA;    INV; 4501 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DMo.
XX
NM   Jockey-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4501
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
RN   [2]
RP   1-4501
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (26-JAN-2022).
XX
DR   [1] (Consensus)
XX
CC   [2]: Sequence updated, 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1679
FT                 /product="Jockey-1_DMo_1p"
FT                 /translation="MTTDSLAAESERIKAVMQSRLDARMAEIRARSSDSSL
FT                 KKIDVTSIQGPKASSIKRKQLSSPGAARKKSSVLDQPSTSKAAAARQNKFA
FT                 LLDQDDEEDCEMEVTANADDQQPAEKPKSRPPPIWCPDIKSVAKLQQVIDE
FT                 VIDPKSYVIKPKRNNIGVLTNCSDDYRAVVKHLSKIGLQFHCYQLKEDKPY
FT                 RVCVKGLHSSTDVDQIKSDICLKGHTVVNVFNPLSRIDKTPLNIFFVDLAQ
FT                 ATNNKQVHDLRIIARQRCTVELPRKFNDLTQCHRCQEFGHTQRYCHKAPRC
FT                 VRCAGQHSSKDCLRARDQPPICAHCEEQHPANYRGCLVYKRLLKAQAPAQK
FT                 RNPAQTFNAAPRWADKGFLTLPTTVPTSGLTYAQAARGEKAQPASNKPDPA
FT                 IIELLQQQQRQFDVINAEIKAMRELQAQQANVLTSLMALITKLSSK"
FT   CDS           1682..4363
FT                 /product="Jockey-1_DMo_2p"
FT                 /translation="MSLRVGIWNANGLCSKAQELAVFLSRRNIDVMLIAET
FT                 RECPTLKIFGYEHYHAHGGGANSFGGSSLLIRSTLAHTPSTQLSDATLQSS
FT                 AICLSTSIGEIEIASIYCPPNADLRVQDIAQIINRRNQKTLIGGDWNGWHP
FT                 FWGSSRANQRGETIFDAIQSAQYSILATGAPTRYPINGHHPSAIDFAIYRG
FT                 IGDRLLSIEECLDLSSDHLPLIVTVHAHPQPFPIRQRLLPAGSDLATFKLT
FT                 LHSSLHPEIELRTAEDVEHAANRMQDAITEAALLAAPAAHIQKHSHYSTPL
FT                 TPHVQNLLEYKRWTRSRWIRTRIASDKSRYNEATRQLKVALAHMQCTRIRE
FT                 ALERADTPAGAEFQLWRYTRNIKRQPLRRHPILSATGEWLTGDEAQAEAFA
FT                 DHLYEQFSPLLTTEQSDLDSIRRTVNSPTPEGIPIEACTKAEVLKQLKAVK
FT                 AKKAPGHDRIDAKVIRALPDSAIDYFVVLCNAILRTQHFPSCWKRAEIIMI
FT                 LKPGKPEKEIASYRPISLLPVLSKVFERILLRRVLNELSRRTIIPEHQFGF
FT                 RRQHGTPEQVHRVINHILGAFENKEYCSAVFLDVKQAFDRVWHLGLLDKIR
FT                 KALPVSQFKLLASYLTGRSFKVLKGHAKSSSRPVRAGVPQGSVLGPTLYTL
FT                 YTADMPLPPSNSDTLIATYADDTAILSRNKSPEVASSQMQDYLHDLNRWLT
FT                 RWSIGINAQKSTHITFATRRGACPEVTLGAPIPRANKVKYLGVTLDKRLTY
FT                 GPHISETVKKCKYKLKKLDWMLRSDSPLSLRSKRHIYNSIVAPVFTYAMPL
FT                 WGSAAKTNINKVQTTQNKALRTWTGAEWYVKNETLHTDLQMPTIAELIGRH
FT                 STRYADRISAHPNQLAANLATNTINRRLKRSHPLDLRSDLN"
XX
SQ   Sequence 4501 BP; 1412 A; 1187 C; 985 G; 917 T; 0 other;
     cacacgtgtg taagccctca aagtgtacat acgcgttctg caaaagtaaa gtgaagttaa        60
     agaaatttcg atacaaatat atcacaaacc tcctaacagt gttgaagtgc tgctgcagtg       120
     tcttctccaa gacgcggtga acgtggatac agcaaaagac gtcaaaacta cttttgtgcc       180
     agcgaaattg caaagaggag ccccggtcac acaccggagg ccacgatcaa aacagctggg       240
     caaccagctg agcaaattag ctgggctttt gcaaggaagc tcaactggtt tgtgtctttg       300
     gaatcgtcat cacccaagaa atatagcata cttctagggc gaagtaatat aaaagagaga       360
     tgactactga cagtctagca gcagaatccg aaaggattaa ggcagtaatg cagagcagac       420
     ttgatgcacg tatggctgaa atacgtgcca gaagcagtga ttcgtccctg aagaaaattg       480
     atgtgacatc catccaagga ccgaaagcat caagcataaa acgcaagcag ttaagctcac       540
     ctggagcagc tagaaaaaaa tcttctgtgc tcgaccaacc gagcactagc aaagctgcgg       600
     cagcaagaca gaacaaattt gcacttcttg atcaagatga cgaagaagat tgcgaaatgg       660
     aagtgaccgc aaatgctgac gatcagcagc cagccgaaaa acccaagtct cgaccgcccc       720
     ctatttggtg cccggacatt aaatccgttg ccaaacttca acaagtcatt gacgaagtca       780
     tcgaccccaa atcgtatgta attaagccca aaaggaacaa tattggagtc cttactaatt       840
     gcagcgatga ctaccgggcg gtggtaaagc acctctcaaa gataggactg cagttccatt       900
     gctaccagct gaaggaagat aagccctacc gagtctgcgt aaaaggactg cactcaagca       960
     cggacgtaga ccagataaag tcagatatct gtctgaaagg gcatacagtt gttaatgtat      1020
     ttaacccgct cagtcggatt gacaaaacgc cgttaaatat attttttgtg gatctggcgc      1080
     aggctacaaa caacaagcaa gtacacgatc ttcgcattat agctcgtcag agatgcacgg      1140
     ttgagctccc gaggaaattc aatgacctca cgcaatgtca ccgttgccag gaatttgggc      1200
     acacacagcg ctactgccac aaggctccca gatgtgtgcg atgcgccggc caacattcct      1260
     ccaaggattg tctgcgagca agggaccaac ctccaatctg tgctcactgc gaagaacaac      1320
     acccggcgaa ctacagaggc tgcctcgtct acaagcgact cctaaaggca caggctcccg      1380
     cgcaaaaacg taacccggca caaacgttca acgctgcccc gcgctgggct gataaaggat      1440
     tcctaacatt gcccactaca gtgcccacta gcggactaac atacgcccaa gctgctagag      1500
     gagaaaaagc ccagccagca tctaataagc ccgatccagc tattattgag cttcttcaac      1560
     agcagcagcg acaatttgac gtcattaatg ctgaaatcaa agcaatgcga gagctgcaag      1620
     cccagcaagc aaatgtcttg accagcctta tggctctcat aacaaaactc agctccaaat      1680
     aatgtcgctt cgcgtgggca tatggaacgc taatggcctg tgcagcaagg ctcaagaatt      1740
     agccgtcttc ctatcacgga gaaacatcga tgtcatgctg attgcagaaa cacgtgaatg      1800
     tcccacgcta aaaatctttg gatacgaaca ctatcacgct catggtggtg gagcaaacag      1860
     ttttggagga tcgtcgctgc ttatccgctc aactctggca cacacaccat cgactcaact      1920
     ctcagacgct acactccaat cctctgccat ttgcctttct acatcaattg gcgagattga      1980
     aatcgcatcg atatactgcc cgcccaacgc agatctccgc gtacaagaca tcgcacagat      2040
     catcaatcga agaaaccaaa aaacgctaat tggaggcgac tggaatggtt ggcatccatt      2100
     ttggggcagc agcagagcga accaacgcgg agagacaata ttcgacgcaa ttcaaagcgc      2160
     acaatactcc atcctggcca cgggagctcc cacacgctac ccaataaacg gacaccatcc      2220
     ctctgcaata gacttcgcca tctacagggg aataggtgac agactcttga gcatcgaaga      2280
     atgtctcgat ctgtcttcag atcatcttcc gctgatagtc accgtccacg ctcacccaca      2340
     acctttcccg atcagacaac gccttcttcc cgctgggtcg gatctagcaa ccttcaagct      2400
     cactctacac tcctcactgc acccggaaat agaactccgc actgcagaag acgtagagca      2460
     cgcagcaaat agaatgcaag atgctataac agaggcagcg ctgctagctg caccggctgc      2520
     tcacattcaa aagcactcgc actacagcac tcctctcacc ccgcacgttc aaaatctgct      2580
     tgaatacaaa cgatggacaa ggagccgctg gatcagaacg cgtatagcca gcgacaaaag      2640
     cagatacaac gaagccacca gacagctcaa agttgccctg gcccacatgc aatgtacgcg      2700
     tattagagag gcgcttgaac gagcagatac tccagctggg gcggaatttc agctatggcg      2760
     atatacgcgc aatattaaaa ggcagcctct gcgtcgtcac cccatcctga gtgctacggg      2820
     tgagtggctt actggagatg aagcgcaagc cgaagccttt gctgaccact tatatgagca      2880
     attctcgccg ctcctaacta ccgagcaatc agatcttgat agcatcagaa ggactgtgaa      2940
     ctctcctacc ccagaaggta tccccataga agcatgcaca aaggcagagg ttctcaagca      3000
     gttgaaagct gtaaaagcaa aaaaggcgcc tggacacgac cgaatagatg cgaaagttat      3060
     cagggcattg cctgattcag ctattgatta ctttgtagta ctatgcaacg ctatccttcg      3120
     cactcagcac tttccgtcct gctggaaacg tgctgaaata atcatgatcc tgaaacctgg      3180
     taaacccgaa aaggaaattg cttcctacag acctatcagc ttgctaccgg tactctctaa      3240
     agtattcgaa agaatacttc tgcgaagagt actgaatgag ctgagtcgaa gaacaatcat      3300
     accggagcat caattcggct tcaggaggca gcacggaacg ccagagcaag tgcatcgtgt      3360
     gatcaaccac attcttggcg cgttcgaaaa caaggaatac tgctccgcag tttttctcga      3420
     tgtcaagcag gcattcgacc gggtgtggca tctgggtctc cttgacaaga tcaggaaagc      3480
     cttacctgtc tcccaattca agttgctggc ctcttacttg acaggaagaa gcttcaaggt      3540
     cctaaaagga cacgcaaaat cctcgagtcg accagttaga gcaggcgtgc cccaaggtag      3600
     tgtgcttggg ccaacattat atacacttta caccgcagac atgccgttgc ctcccagtaa      3660
     cagcgacacg cttatagcga cgtacgcaga tgatacagcc atactgagtc gcaataaatc      3720
     gcccgaagta gcctctagtc aaatgcaaga ttacttgcac gatctcaatc ggtggctaac      3780
     tcgctggagc atcggaatca acgcccaaaa gtccacgcac atcacattcg caaccagaag      3840
     gggagcctgc cccgaagtga ctctaggagc tccaatacca cgggcaaaca aggtgaagta      3900
     cctgggagtc actctggata agagactgac ctatggcccg cacataagtg agacagtcaa      3960
     aaagtgcaaa tacaaattaa aaaaactcga ctggatgcta agaagcgaca gccctctgtc      4020
     actacgaagc aagaggcaca tttacaactc aatagtggca cctgttttca cttacgcaat      4080
     gcctttatgg gggtctgctg caaaaacaaa cataaataaa gtccagacca cacaaaacaa      4140
     agcactaagg acttggaccg gagccgaatg gtacgtcaaa aatgaaaccc tgcacaccga      4200
     cctccagatg ccgacaattg ctgagctcat tggccgacac agcacaagat acgcggacag      4260
     aatatccgcc cacccaaacc agcttgcagc caatttagcc accaatacta tcaacagaag      4320
     gctgaaaaga tcgcatcccc tagacctgag aagtgaccta aattaaatta aattaaagta      4380
     actttttgca ataaaggcat ttagccactc cattagttaa ggtaccctta caaatgcgcc      4440
     atagagttta cgacaaaagc tgcaataaaa ctatattaaa aaaaaaaaaa aaaaaaaaaa      4500
     a                                                                      4501
//
ID   Jockey-1_DMoj repbase;    DNA;    INV; 4758 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   16-OCT-2020 (Rel. 25.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DMoj.
XX
NM   Jockey-1_DMoj.
XX
OS   Drosophila mojavensis mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4758
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
RN   [2]
RP   1-4758
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-SEP-2020).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence extended. ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           283..1902
FT                 /product="Jockey-1_DMoj_1p"
FT                 /translation="MEKINEIKNLRGATPAELRSQIMHEIAAIENNAEQSN
FT                 DSISINTSHSSSGQARSSEIKTSSFAVGSFSLVKSQRKPLPCKRKSIASSP
FT                 HDSPTSSNPKRSSQSTSQKPTLDNTYRNRFEALTSDSDDEEEEAMSTEHTN
FT                 PPVSLTKVLEQCTANHRKQQDKLKNTSAQPRVNKQSQLTPKSNIPPITIPR
FT                 LTDLPMLQELLKNNKLYGSNKVQIRTSAGGLTRLYAQDIETFRAIQNLFET
FT                 VNLEFYTYQLKQDRPYKFVIKGLHHSTLHSAIKNELGSLGFNVTNIHCPDN
FT                 TKRPENPIDMFFISIAPGCNKADLKNIIHLDGQRITIEEARKKQQWTQCSR
FT                 CQNFGHTARYCRQTFVCVKCAEHHKSSECLLPDSAPATCANCGQGHTANYR
FT                 GCQAYVSYAARNQRKPRSQYPLSAATQPALSQVPWPPMTSASRPPLASYHN
FT                 SRPTYAQMIRSNPHDGSNWPPVGHFTDPGHTPRQQTRSTYQPTPPTVQTSP
FT                 EFPALIASLNTLNETVVRLVKMQEEMLSMQSKILDLLVARANNV"
FT   CDS           1898..4621
FT                 /product="Jockey-1_DMoj_2p"
FT                 /translation="MSNVTNIMCWNARGVSNKMRELELFVQLHDIHILLIS
FT                 ETQIVDGFVPKLFRFACHTANYPSTSNRRGGSAIFVREDIEHFFTIPVRSA
FT                 SIQLARARVATGLGHVEFGAIYCPPNNQLSMADMLDIWQSLDRKFLICGDW
FT                 NAHHQSWGSARSTARGRDLFNLTLATSTQIIATGSPTRFPDHNRQRPSCLD
FT                 FGLYKGIPQWKLKIASYNDLGSDHMPLVISLDASIKCYPQAERLINRNVDV
FT                 NLFKLILNNMMHPELEINSEQDVDDALHLFNANIRRAAKDAQKTQPSHTPR
FT                 QAGSLILTSELRHLLQQKRRLRKIYQRTLHPVDKSNWNRAANSLRSELARQ
FT                 RSQMFDDMLENMSTAKDAKFNLWKATRSSRRQTIRQAPIKNGPDSWCRSDE
FT                 EQAEALATHLEARFLPFAIASQEDTQSTEQALLSPLQLDPPEEPYNFDEVA
FT                 TVIKHLNPNKAPGHDNICNRTLRALPENAILVMVLIFNAITRLQYFPAVWK
FT                 VALVVMIHKTGKPEEDPASYRPISLLPSLSKVWERLVIRRLVAVAEARKLI
FT                 PAQQFGFRAGHGTTEQLHRVTDHILRAFDNKKHCNAIFLDIEQAFDRVWHP
FT                 GLLQKVKEQLPSHYFALIRSYLEGRSFRVKVKSSQSSTYSIAAGVPQGSIL
FT                 APLLFCIFIGDAPLPDASGFGVSQSSTLVATYADDICVMVSTKSSSAAAEI
FT                 LQDFIDSFVQWANRWNIKISATKSKSLCFSLRKEAPTTVFINGTPLEKART
FT                 VKYLGIHLDSRLTFKPHILATVGTCRARLKQMSWLLHNKSKLSLANKRMLI
FT                 THIITPIWRYGVQVWGVAAKSNRQKIQIMQNKALRQITGCPWFVRNSSLHR
FT                 DLKMDSVEEQISFHSSRYNDRLKSHANRLARKLPNSKPIRRLKRRQFENLI
FT                 ANSN"
XX
SQ   Sequence 4758 BP; 1388 A; 1266 C; 1008 G; 1096 T; 0 other;
     ccgcgacaag ctctcgttgt gaacggttgt gttgcgcatg aaatttacca aaatctaaac        60
     cctttgtttt gattctgcaa tttaccgttg tttttctgct cttcgagctg tgcttatcag       120
     cagatatcta tatttagaca tcgtcgcgcg cggtgtcagt gcaaactgtg taaaaagaaa       180
     caataacagc tccgaacttc aagaacaaat tcgtgcgctt gccctgtggg caagtgcctt       240
     ctctgtgaaa cacagatcat agacattcag acaatttgtg acatggagaa aataaatgaa       300
     attaagaatc tgagaggtgc cacacctgct gaactcagat cacaaatcat gcacgaaatt       360
     gcagcaattg aaaacaatgc cgagcaatcg aatgattcta ttagcatcaa caccagccac       420
     agctctagcg gccaggcgag aagctctgaa attaaaactt ccagctttgc ggtgggtagt       480
     ttctcacttg tgaaatctca acgcaagccg cttccctgca aacgcaaaag cattgcgtcc       540
     tctcctcacg atagcccgac aagcagcaat cccaagagaa gttcccaatc tacttctcag       600
     aagcccactt tggacaatac gtaccggaac agattcgagg cgctgaccag cgattctgat       660
     gacgaagagg aagaagcaat gtcgaccgag cataccaacc ctccagtctc attgacaaaa       720
     gttcttgagc agtgtactgc taatcatcgt aaacagcagg acaagctcaa aaacacatca       780
     gcacagcccc gagttaacaa acagtctcaa ctgactccaa agtcaaatat ccctcctatc       840
     accatcccaa ggctgacaga tcttccgatg ttgcaggaac tattgaagaa caacaaactt       900
     tatggctcca ataaggtaca aatacgcacc tctgccgggg gtctcacgcg tctttacgcc       960
     caagacatag aaacatttag agctattcaa aacctctttg agactgtcaa tctcgagttt      1020
     tacacttatc aactaaagca ggataggcca tataagttcg tcatcaaagg tctgcatcac      1080
     tccaccttac attccgccat taaaaacgaa cttggtagcc tgggattcaa cgtcactaat      1140
     attcactgtc cagacaacac aaagagaccg gaaaatccca ttgacatgtt tttcattagt      1200
     attgcgccag gctgcaacaa agcagacctt aagaatatca ttcacttgga tggacaacgg      1260
     attacgattg aagaagctcg caagaagcaa cagtggacac aatgctcaag atgccaaaat      1320
     ttcgggcata cggcaagata ctgcaggcag acttttgtgt gcgtcaagtg cgcagagcac      1380
     cacaaaagct ctgaatgtct actcccagat tctgcacccg ccacttgcgc taactgcgga      1440
     cagggccata ccgcaaatta caggggatgc caagcgtacg tgtcgtatgc agcccgaaac      1500
     cagcgcaagc cccgcagcca gtaccctctc tcggctgcaa ctcagccagc tcttagccag      1560
     gtcccctggc caccaatgac ttccgctagc agacctccac ttgcttctta ccacaactcg      1620
     cgacccacct atgcccagat gatcaggagt aacccccatg acggaagcaa ttggccccca      1680
     gtaggacact tcactgatcc cggtcatacc cccagacaac aaacccgttc cacctaccag      1740
     cccacaccac ccactgtaca aacaagcccc gagtttccgg cactcatagc ctctcttaat      1800
     accctgaacg agacagtagt cagactagtc aagatgcagg aagaaatgtt gagcatgcag      1860
     tccaaaatac tggaccttct cgtcgcgcgt gccaacaatg tctaatgtaa caaacattat      1920
     gtgttggaac gccagagggg tttccaacaa aatgcgtgaa ctggaactct ttgttcaact      1980
     tcacgatatt cacattctgc taatcagtga aacgcaaata gtggacggct tcgtgcccaa      2040
     actcttccgc tttgcctgtc acacagcaaa ctacccatca accagcaata ggagaggtgg      2100
     ctccgccatt ttcgtgagag aggatattga acactttttc accatcccag ttcggtctgc      2160
     ttccattcaa ctggccaggg ccagagtagc tacgggattg ggacatgtag agtttggcgc      2220
     aatctactgc ccaccaaaca atcaactgtc catggcagat atgcttgata tatggcaatc      2280
     cttggaccgg aaattcctga tctgtggcga ttggaacgct catcaccaat cttggggatc      2340
     agcgagaagc accgctaggg gtagagacct cttcaacctc acgctggcta catccacaca      2400
     gatcatagcc acgggcagcc ccactcgatt cccagaccat aataggcaac ggccttcctg      2460
     tctggacttt ggtctatata agggcatacc tcagtggaag ctgaaaattg cctcttataa      2520
     cgatctcggc tcagatcata tgcctctggt aatctcgctg gatgcctcta taaaatgcta      2580
     ccctcaggcc gaaagactga ttaatagaaa tgtcgacgta aacctattta agttgatcct      2640
     caacaatatg atgcatcccg aattggagat aaattcggaa caggatgttg atgacgctct      2700
     gcacctgttc aatgcaaata ttcgccgcgc tgccaaggat gcgcaaaaga cacagcctag      2760
     tcataccccc cgccaagccg gttccttgat actcacttca gagctccgtc atctactgca      2820
     gcaaaagcgt cgcttaagga aaatctacca gcgtactcta catccggtag acaagtccaa      2880
     ctggaacaga gcagcaaact cactaagatc ggagttggcc cgacagcgct cacagatgtt      2940
     tgacgacatg cttgaaaata tgtcgactgc aaaagacgct aaattcaacc tgtggaaagc      3000
     caccagaagt agcagacgtc aaaccatacg gcaagccccc atcaaaaatg gcccggatag      3060
     ctggtgtcga tcagatgaag agcaagcgga ggctcttgcc acccacttag aggcccgctt      3120
     cctgccgttt gctatagctt cacaagaaga tacgcaatcc accgagcaag ccctgttgtc      3180
     cccactacag ctcgatccac cggaggagcc gtacaatttt gatgaggtgg caaccgtaat      3240
     caaacactta aacccaaata aggccccggg acacgacaat atctgtaacc gcacactcag      3300
     agcactgccg gagaatgcta tcctcgttat ggtattaatc tttaatgcca taacgaggct      3360
     tcagtatttt ccagcagtgt ggaaggttgc gcttgtcgtg atgatccaca agactggcaa      3420
     gcctgaggaa gaccctgctt cataccgacc tatcagtctc cttccttctt tatcgaaggt      3480
     ttgggaaaga ctggtcatcc gtcggctggt agcagtagcg gaggctagaa aactcattcc      3540
     ggctcagcag tttggtttcc gcgctggaca cggtactacc gagcagctgc acagagtgac      3600
     ggatcacatc ctcagggctt tcgacaacaa aaagcactgt aatgccattt ttctggacat      3660
     cgaacaggcc ttcgataggg tatggcaccc aggactgctg cagaaggtca aggaacagct      3720
     gccctcgcac tacttcgctc tgatccgatc ctacttggag ggtcgttctt tcagagtgaa      3780
     agttaaatcg agtcagtcct ccacatactc gattgccgct ggcgtaccac agggcagtat      3840
     cctcgctcct cttcttttct gcatcttcat aggtgatgct cctcttcctg atgcttcagg      3900
     ctttggagtc tcccaaagtt caactttggt ggcaacctat gcggacgata tctgcgtaat      3960
     ggtgtcaaca aaatccagct ccgcagcggc ggaaattctc caagatttta ttgattcctt      4020
     tgtacaatgg gcgaacaggt ggaatattaa aattagcgcc actaaaagca agagcttatg      4080
     cttttcttta agaaaggagg cgcccaccac cgtattcatc aatggtaccc ccttggaaaa      4140
     agcccggacg gtaaaatact tgggcatcca cttggacagt cggctcactt tcaagcccca      4200
     cattctggcg actgttggca cctgtcgcgc ccgcctcaag cagatgtcct ggctgctaca      4260
     caacaaaagc aagctgtccc ttgcaaacaa gcgtatgtta ataacgcaca taatcacgcc      4320
     aatatggagg tacggtgtac aagtttgggg agtcgccgca aagagtaacc gacaaaagat      4380
     ccagataatg cagaacaagg ccttgcgcca aatcactgga tgcccctggt tcgtaagaaa      4440
     ctcctccttg catagagatc tcaaaatgga ttcagtggaa gagcagatct catttcattc      4500
     aagccggtat aatgatcgcc tcaagtccca cgccaaccgg ctggcaagaa agctgccaaa      4560
     ttcgaaaccc attcgtcgat taaaaagacg acagttcgaa aacctcatcg ctaatagtaa      4620
     ttaatttact taaatatata tgtttaaatt ttagaagtaa atgttaaacc tgtgatgtaa      4680
     attttgtttc aaggaagatt atagggcaaa atgatgctct ggcgcttcct actaataaaa      4740
     aaaaaaaaaa aaaaaaaa                                                    4758
//
ID   Jockey-1_DPer repbase;    DNA;    INV; 7061 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7061
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1648-1648 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..2172
FT                 /product="Jockey-1_DPer_1p"
FT                 /translation="MDCSPMVSSISTLSDGTTNHTQINDNNNKSPGQSTMD
FT                 KNNKVETRLNPLTTTPPHRPRVASTPKSTAKNPISKAGNNYRVGDARHSTT
FT                 PATKPGPLCSKIRKVLPLTLSRPKRPQSVTAAIVMEAVKMNIGPTIAAKLA
FT                 KTLSKTATAATVDAGESRHPSEAMEMDPYTRDDAAETPGDSALGQQQQQQQ
FT                 QQTQQSHLQDQGQLPHQQQQYKAADQKEPQRPITETKIPAIYLHDVSNIQP
FT                 LIESLNNAPGEQNKFTTTSVRGNKIKLDCGDMETYNRVMAKLDADNINMHT
FT                 HQLRKERGYRIILRNLHHSTPCDWIRKLIGEMGLSVRYVNVIKHRRSRKPL
FT                 NMFEVELEPTLDNGNDKILSLTTMGNQEISVERQMRRIDPVQCHRCQCFGH
FT                 SKNYCRRAFVCQKCAGAHPSTACAEAKIPNPKCANCGEGHVASYRGCKAFK
FT                 QAQATLKSYRAHIAIGKQKRTNWQHQKNTNSTRQNAAYSGEINKSLRWQQR
FT                 KQKHHLPKPHQNTQQQQHNNNSSQPTNSQNINKAPKRQLFSQLFSNNNKLS
FT                 VGQQESNISRAPRGHHQQQQKTQKPAPANLQQQHNNSQQPTISRYTNKTPN
FT                 LQPFSNKNQPSDDLQGNSISRPHSSSRGHQQQQRESQKHAPQPQLYQQPGA
FT                 PYVNDQLMQVVHQNLLLVSEMGKKMDALIDLLHTFIISNKGQTISTANDIV
FT                 NE"
FT   CDS           2168..6145
FT                 /product="Jockey-1_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNNYAEIPYTTNTISANNTANSLATTTINVNTNNLAH
FT                 TTTATTGAQYNSSLKIVYWNACGLKNKILELELFMQRNNVDIMMVIETRIT
FT                 TNDPTTTITDNLTIKDYVLYTASHPSSRRKGGVAIYVKTGLKHIALEPITE
FT                 NFLQCAPIALTTNNNEVIALAPIYCPPTITWTEQHFKRLFKYMSELCYGSK
FT                 FIVCGDWNAKHPWWGNVRSCKRGRVLMNTIHANTCLNVLATGGATHYPFDQ
FT                 RKRPSAIDLAVYAGINYDRIHTYSAVDLQSDHLPIFINLGINGSTTVPVTN
FT                 RRLLPSKANVKKFQDFLSQRINLNMEINSGEDIEDAIDILNQNIYNAAAAA
FT                 TSLINLRSHPRTGQLPLDRKTQKLLRLKWQHKREHMRRPTLETRRLYNAAN
FT                 HRLKKALRKAKNNQINNLFKKVDAQDRYRMQKLWRLTNTLKRQPEPNWPLK
FT                 IPSSSGSREGYRWTKSSEEKAEAFVSHLEERFTPKLINSDEFRNSVVMECN
FT                 EIAQLKRLTTKPAWLQRQQFGREYDVNRLPFRPISPNEVMMEIKSLQNKKA
FT                 PGMDQINNRVIKALPQKVIIHLTNIYNCILRHGHFPKQWKCAAITMIKKPS
FT                 KNANEVGSYRPISLLAGFSKIFETLLMKRMFECEDFEKAIPSHQFGFRREH
FT                 STEQQLARVTQYILDAYEKQLFCSAVFIDVSEAFDRVWHNGLLLKLAKLLP
FT                 FTYYNVLKSYLADRTFIVNGNNGIRSRPGRICAGVPQGSVLGPVLYTVFTS
FT                 DMPLPHLSEQNERIESNIYNNMMLSTYADDTIILCAKKEASTAVRTNQCYL
FT                 EHFTAWASKWCISLNTSKTVHVLYTRRSIANGIGELSPKMYNEAIKSKPRH
FT                 RYLGLIMDRKLVLHAHTTQLAIRVRAAAMRLNWIIGHQSRLSKRCKMVIYK
FT                 QLIAPIWQYALPVWGALVCESQFCRVESAQNQLLRKIVKASRYTRNQVIRD
FT                 AHNIDSAEETFDKASGRLAASLFRHPNLEAKRLIMQPFIPQRLDRPRYTKQ
FT                 LETHFRPLQQQLLQQAAQQQLLLPTLIRHEQLEIEQQRQLRESQAKEALVE
FT                 RKRLEQERRIALGIPQERPSIIWVNRMAQCLRRGEMNRLEMAQKIRFEPEY
FT                 IQRLIMTPLEPHEFPPPTPEQLLEEQMKSLQQQLEKELDDEMDAAFAAEES
FT                 RARTNPHQEASSVCVEAAQPKAMATPIPKRRQNIINANLDGNNSAYLYLQA
FT                 NITATDGLLVHPRQIWRPAVHPLACHPAVIPMAACSERPPTPSSIRASPTA
FT                 GIDXNDVSGMTFWQLLRIHSAACSSLSLLQNLKEDEKSSSMPIWMAITLLT
FT                 SIYRQTAQILTASW"
XX
SQ   Sequence 7061 BP; 2287 A; 1809 C; 1433 G; 1529 T; 3 other;
     gatctaaata ccaacaaaga tgcaattagc atctgcaact ctgaattttc ttcgcctaac        60
     gccactatgg actgctctcc aatggtatcc agtatatcaa ccctcagcga cgggaccact       120
     aatcataccc aaataaacga caacaacaac aagtcccctg gccagagtac aatggacaaa       180
     aataataaag tagaaaccag actaaatcct ttgacaacca cgccaccgca caggccgcgt       240
     gtggcttcaa ctcccaaatc tactgcaaag aaccctatat caaaggcagg caataactac       300
     cgagtaggag atgcccggca tagtacaact ccggccacaa aaccaggccc cctatgcagt       360
     aaaataagga aagtattgcc cttgactctg tcccgaccca agcgtcccca atctgtcact       420
     gctgctatag tgatggaggc ggttaaaatg aatattgggc ccactattgc ggccaaactg       480
     gccaaaactc tttccaaaac tgcgacggca gcaacagtcg atgcaggaga aagcagacat       540
     cccagcgaag ctatggaaat ggatccatac acacgggatg acgctgcaga gacaccaggt       600
     gactcagcct tgggtcagca gcaacaacag caacagcagc aaactcagca gagccacctg       660
     caggatcagg gtcagttgcc gcatcagcag caacaataca aggcagcaga ccagaaggaa       720
     cctcaacggc ctatcacaga aactaaaata ccagccatct atctgcatga cgtttctaac       780
     atacagcctt taatagaatc ccttaacaac gcaccagggg aacaaaataa atttaccact       840
     accagtgtaa ggggtaacaa aattaaactg gactgcggcg atatggaaac ctacaacaga       900
     gtcatggcca aacttgatgc agacaatata aatatgcata cacaccagct gcgcaaggaa       960
     cgtggctacc gtatcatctt gagaaatctg catcactcta ctccttgcga ttggatacgc      1020
     aaattaatcg gcgagatggg tctttcagtg cgttatgtaa atgtaattaa acataggcgc      1080
     agccgcaagc cgttaaacat gtttgaagtt gaattggaac caaccttaga caatggtaat      1140
     gacaaaatcc tatcactgac tactatggga aaccaggaaa tttcagttga acgacaaatg      1200
     agacgcattg accctgttca atgccaccgc tgccaatgct ttggccacag taaaaattac      1260
     tgtcgccgag cttttgtttg ccaaaaatgt gccggggcac acccatccac agcgtgcgcc      1320
     gaggctaaga tcccaaatcc taaatgtgcc aattgtgggg aaggacatgt tgccagctat      1380
     aggggctgca aggcgtttaa gcaagcccag gcaacactca aatcctaccg ggcgcacatt      1440
     gctattggaa aacaaaagcg gacaaactgg cagcaccaga agaacaccaa ctccactcgg      1500
     cagaatgcag cttacagcgg ggaaataaac aaaagcttga gatggcagca gcgaaaacaa      1560
     aaacaccacc tacctaaacc acaccaaaac acgcagcagc agcagcacaa caacaacagc      1620
     tcccagccga ccaacagcca gaacattaac aaggccccaa aacgccagct ttttagtcaa      1680
     cttttcagca acaacaataa actgtccgtt ggccagcagg aaagcaacat cagcagggcc      1740
     cctcgcgggc atcaccagca gcagcaaaag acacaaaagc ctgcgccggc taacctgcag      1800
     caacaacata acaactccca acagcccacc atcagccggt acactaataa gacgccaaac      1860
     ctccagcctt ttagcaacaa aaatcaacca tccgatgacc ttcagggcaa cagcatcagc      1920
     aggccacact cctcctctcg tgggcatcaa caacagcagc gagagtcaca gaagcacgcc      1980
     ccccaaccac agctatacca gcagcctggg gccccatatg tgaatgacca gctaatgcag      2040
     gtagtgcacc aaaatcttct ccttgtaagt gaaatgggca aaaaaatgga tgcccttata      2100
     gatctattgc atacttttat tatctcaaat aaaggacaaa ctatttccac cgctaatgac      2160
     attgtaaatg aataattacg ccgaaatacc gtatactaca aacactattt cggccaacaa      2220
     tacagccaat tctctagcta ctaccaccat aaatgtaaat acaaataatt tagctcatac      2280
     cactactgct actacaggcg cccagtacaa cagctctctc aaaatcgttt attggaacgc      2340
     ctgtggtcta aaaaacaaaa ttttggagtt agaactattt atgcagcgta ataacgtgga      2400
     cataatgatg gttattgaaa cccgcataac cacaaatgac cctactacca caataacaga      2460
     caatctaacc ataaaagact acgtactgta tactgcctca cacccttcct ccagaaggaa      2520
     aggtggagta gccatttatg tcaaaactgg tctcaagcac attgcacttg aaccaattac      2580
     agaaaatttc ttgcagtgtg ctcccatcgc attaaccact aacaataatg aggtcattgc      2640
     tctagcgcca atatattgcc cgccaactat cacctggacg gagcagcact tcaaaaggtt      2700
     attcaagtac atgagcgaac tctgttatgg ctccaaattt atagtttgcg gggactggaa      2760
     cgctaagcac ccatggtggg gaaatgtgcg atcctgtaaa agaggcagag ttttaatgaa      2820
     cacgatccat gcaaacacct gcttaaatgt gttggccact gggggagcca cacactaccc      2880
     atttgatcaa agaaaaaggc cctccgctat cgatctggca gtatatgctg gcataaacta      2940
     tgacagaatt cacacctatt cagcagttga cctgcaatca gaccatcttc ctatcttcat      3000
     taacctgggc atcaatggct caacgacagt cccggtaaca aatcgccgac ttctaccaag      3060
     caaagcaaat gtcaaaaaat tccaagattt cctatcgcag cgtatcaatc tcaacatgga      3120
     aataaactca ggagaagaca ttgaggatgc gatcgacatt ctaaatcaaa acatctacaa      3180
     tgcagcggcg gctgcaactt cgctaataaa tctgcgttct cacccacgca cagggcaact      3240
     gccactagat aggaaaacac agaaactatt aaggctcaaa tggcagcata aaagggagca      3300
     tatgcgcaga cccaccttgg agacgcgaag gttatacaac gcagcaaatc atcggctaaa      3360
     aaaggccctt cgtaaggcta aaaataacca gatcaataac cttttcaaaa aagtagacgc      3420
     tcaagatcgt tacagaatgc aaaaactatg gcgcttaaca aacactttaa agaggcagcc      3480
     agaaccaaac tggccattga aaattcccag cagtagtggt agtagagaag gctataggtg      3540
     gacaaagagt agcgaggaga aagctgaagc ttttgtktca catttagaag aaagattcac      3600
     accaaaactc ataaactctg acgaatttag aaatagcgta gttatggagt gtaatgaaat      3660
     agcgcagctc aaacgcttaa caactaaacc tgcctggctt cagaggcaac aatttgggcg      3720
     ggaatacgat gtaaatagac tcccgttcag gcctatttcc cccaatgaag ttatgatgga      3780
     aatcaaatct ctgcaaaaca aaaaggctcc tggcatggac caaataaaca acagagtcat      3840
     taaagcgcta cctcaaaagg taattattca tttgacaaat atttacaatt gcatcttgag      3900
     acatggccat ttccccaaac aatggaaatg tgctgctatt acaatgatta aaaaaccgag      3960
     caaaaatgca aatgaagttg gctcttatcg accgattagc cttttggctg gcttctctaa      4020
     aatctttgaa accttgctca tgaaaaggat gtttgaatgc gaagactttg agaaggccat      4080
     tccctctcat cagtttggat tcaggagaga gcacagcacg gagcaacaac tggcacgcgt      4140
     tacacagtat attcttgatg catatgagaa acagttattt tgttctgctg tatttatcga      4200
     cgtgagcgaa gcctttgacc gagtttggca taatggtcta ctacttaagc tagcgaagct      4260
     actcccgttt acatattaca acgttttaaa aagttactta gcagatagaa catttattgt      4320
     aaacggaaac aatggaatac gctcgagacc tggaaggatt tgcgcaggag tgccccaggg      4380
     tagcgtcctc ggccctgtac tctacacagt cttcacgtcg gatatgccgc taccgcacct      4440
     gtcagaacaa aatgaaagaa ttgagtcgaa tatatacaac aacatgatgc tttctactta      4500
     cgcagatgac acaatcatcc tatgtgctaa aaaagaagcc agtacagcgg ttagaacaaa      4560
     tcagtgctat cttgaacact tcactgcctg ggcttccaaa tggtgcatca gccttaatac      4620
     cagcaaaacg gtccatgtcc tctacacaag gcgatcgatt gcaaatggca taggtgagct      4680
     atcgccaaaa atgtacaacg aagcaatcaa aagtaagcca aggcatcgct atctaggctt      4740
     gataatggac aggaaacttg tgctacatgc ccataccacc cagttagcaa ttcgagtgag      4800
     agcagcagcc atgagactga actggatcat tggtcatcag agccggctat ctaaaagatg      4860
     caaaatggtt atttataaac aattaatcgc cccaatatgg caatatgcct tacctgtatg      4920
     gggagcattg gtatgcgaat cacaattttg cagggtagaa agcgcacaga accaactcct      4980
     acggaaaatc gtgaaggcta gcaggtacac aagaaatcaa gttatccgag atgcacacaa      5040
     cattgactct gcagaagaaa cctttgataa agccagcggc aggctagcag cttcactatt      5100
     tcgccatcca aatctggaag caaaaagact catcatgcag cccttcattc ctcaaaggct      5160
     tgaccggcca agatacacaa agcagctgga aactcacttt cggcctctcc aacaacaact      5220
     cctgcagcag gcagcacaac aacaactact gctgccaact ttaatcagac acgagcagct      5280
     tgaaattgaa caacagcgcc aactccggga gtcccaagcc aaggaagcac ttgtcgaacg      5340
     gaaacgcctt gaacaagagc gtcgcatagc ccttggtatc ccgcaggaga gaccctcaat      5400
     aatctgggtt aatcgtatgg cgcaatgtct caggagagga gaaatgaatc gattagaaat      5460
     ggcgcagaag attcgttttg agcccgaata catacaaagg ctcataatga ctccgcttga      5520
     accgcacgaa ttccctccgc ctactccaga gcagcttctc gaagagcaga tgaagtccct      5580
     gcagcagcaa cttgagaagg agctcgacga cgagatggac gcagcatttg ccgccgaaga      5640
     aagccgagcc cgcacaaatc cgcaccagga agcctcatct gtgtgtgtag aagctgcaca      5700
     accaaaagct atggccactc caatacctaa aagaagacaa aatatcatca atgccaatct      5760
     ggatggcaat aattctgctt acctttattt acaggcaaat atcacagcta ctgacggcct      5820
     cttggtgcat ccaaggcaaa tctggcgccc agcagtccat ccgttggcct gccatcctgc      5880
     tgtaattcct atggctgcct gcagcgagcg gcctcccacg ccatcttcta taagggcctc      5940
     gcctactgcc gggattgacc kgaatgacgt atccggaatg actttttggc aacttctccg      6000
     aatccactcc gcagcctgca gcagcctatc kctactccaa aacctgaaag aagacgaaaa      6060
     atcctcatca atgccaatct ggatggcaat aactctgctt acttctatct acaggcaaac      6120
     agcacagata ctgacggcct cctggtgaat ccacggcgaa agcggaggcg agtagtccat      6180
     ccggtggcca gctatcctgt tgcgaatcct ctggctgggc gcagcgagcc ggctgcaatg      6240
     ctcccttctg caccagaagg tgcctcgtcc attgccggtg cacatttccg cccctggaat      6300
     cgccttttga ctggctcgcc aaatccgcac cgcagtatat ccagcatcca acgaaggcct      6360
     gtccgacagt tacagcagcc actggtgaat cttcttctca ttggcctaat gctggatcca      6420
     tggcagttgc agcagcccaa tgacgtcacg tggcatctac tcagaccgct cccaggtcac      6480
     cttctgaaat ttcaccgccg tccagtgcgc caatggtgga aaggcgcaca ccgaaagaca      6540
     cgccctctgg aagcatatag gcgaagcaat ctgtaacaat cgaatactta ctcacttacg      6600
     gtgcggcttt atacttcccc tgaggctgca gcagcctgat gaagtcaccg ggtccattgt      6660
     tttgacacct gctcaagcca acttctacag acccaattcc atccagtgag ctgatgatag      6720
     aggtccatac ctatatacat atacgtccgc tgtaattaaa tgggcaaaga aattataatt      6780
     aatatagctt atatttgtta aatttataat ttttaatact tacaatgcaa tttccaaatg      6840
     taaacaaatg cacgttgttg ccagagtgtc ttgatttctt gtaatgtaaa gttaaatgtc      6900
     ccaaccatgt gtaattagtg gttcagctgt taaataacag ccgttaaaaa atatttgtaa      6960
     atgcgttcaa atgtaaaatt gcgaaaacaa ataaaattag ctgagggtca ctgtggccaa      7020
     tcagtcttat tgtgctcgcg ccgtcgacac acaaccacaa a                          7061
//
ID   Jockey-1_DRh repbase;    DNA;    INV; 4322 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4322
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1679-1679 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           157..1725
FT                 /product="Jockey-1_DRh_1p"
FT                 /translation="MNASRNAKATAFDANRCLSDTSDEFDDSNYSDTSSVP
FT                 TMTIFTPKWISKNAADXERFTQVNNLRKRRNLDILGGSNINKSSLPNPVGD
FT                 HKRPQAPASGMTIQSHSSSQEDSTYLGKNNSFAILSDDDDDDTMTSTHNNE
FT                 SISTSKLGHGLSEPVEANLHSVSPRNASSQAKTKKRDPRPPPFLLRGITDF
FT                 RQLISLLSSVTNGFRLKTTGKSSCRVTVDDGNVYRVVQKLFKDNGIPVSTF
FT                 QFKNERAFRVVIKGLHASTEIAEITAKLKALGHNPRNVFNPPGENGKANRD
FT                 IFFVELEPARNNKNVYDIQIIDYQVVKVEPQLQRKGPLRCFRCQEFGHSKN
FT                 FCSLLPKCARCAGDHETKDKERCLAINEEQLKCINCGSNHSASSRRCPAYL
FT                 EAIERRKPTGSVERRPTQKRTFKPAMPPAQNAWFXTRLSASSSQTSPTANS
FT                 HPSEKTSLVEQPTQDRLLEFINGLRKQQEAAAIAQAAAIDKLLLRFDQMMS
FT                 VMTTTLQMLQSVISKHANLSGSTQCDD"
FT   CDS           1721..4165
FT                 /product="Jockey-1_DRh_2p"
FT                 /translation="MTNYGINIVIWNANNLVGKSLEIEHLLQERNIDILLI
FT                 SETHFTSRSFFHIGGDWNAHHSFWGCRRSCPRGNTLMSVIADSNMQILATG
FT                 GPTHFPWINDHLPTAIDFAVYKGIPCNHLTISECPGLSSDHIPLLIYFCVA
FT                 AYTIVTKSRLLPRGSDLKRFSAQLTALTQEQPSLLSVDDVDSFAEVLVEQI
FT                 HQAAPPPRSIPIPPPSWAYSKPEIAALARKGHALRRVWMRTRHTIDMARWK
FT                 ATVSELRKVLRSAKSEFFIDKLSAIDPNQNHGFALWKCTRNLKRQPLQRFS
FT                 LKRGDGTWAHSDSEIAEVFADDLENRFTPFEFATSEEVQTTISRLGLSFGP
FT                 PVTVRPVDEDEVRGHIKRLVTTKAPGMDAIDGKVAKALPSSVIAQLCLLFN
FT                 ACLDLGYFPSPWKRALVTMVAKKGKDPCCPESYRPISLLSTFSKIFERIML
FT                 GRLLAINAFEDALPNHQFGFRSRHSAIEQVHRVINHVLGAFEDHKYCSAVF
FT                 LDVRQAFDRVWHEGLFYKLMPLLPERLWNLVVSFLDNREFAVDIRGHRSGL
FT                 RPIRAGVPQGSVLGPVLYTIYTSDLPNPVARGTLLATYADDTAFLAAGSTT
FT                 TSASRRVQTFLDEFECWASRWNIALNVDKTQHATFALRPGRSRSLYIDGNR
FT                 LKHEDKVTYLGVTLDRRLCWKGQIDRVCGSARTKLDKMDWLLRPGSGLSLE
FT                 AKVRLFKAIVLPTLNWGITCWGTACDSSLKRVQTCITKALRRMLGVKWHHY
FT                 VENRVMFQDTGVPTVTETICSHMQTVWQDILQHRWVDGVSADDTRQTYGFS
FT                 AVTDTVVFCNNTS"
XX
SQ   Sequence 4322 BP; 1152 A; 1049 C; 960 G; 1159 T; 2 other;
     gttcccaaaa aagatgtctt ccaatttcaa gccatctcga cgaaaggttg tcgtgaaacc        60
     aatcatgact ctcatgtggc taagcactcg gtctttgcta aggaccaagt tacgcgacca       120
     ccagtcaata cagacgaagc tgctaaagta gctgttatga atgcctctag gaatgccaag       180
     gcgactgcct ttgatgccaa taggtgcctc tctgatactt ctgatgaatt tgatgattcc       240
     aattattcag acacctcatc tgtcccgact atgaccattt ttacccccaa gtggattagt       300
     aagaatgctg ccgatganga acgctttact caggtaaata acctaaggaa aagacgaaat       360
     cttgacatac tcggaggtag taatatcaac aaatcatcgc tgccaaaccc tgttggcgac       420
     cataaacgtc ctcaagctcc agcctctggc atgaccatac aatcacattc ttcaagtcaa       480
     gaagactcta cctacttagg aaagaacaat agctttgcta ttttgtctga cgatgatgat       540
     gatgatacaa tgacttccac tcataataat gaatcaatca gcacctctaa acttggtcat       600
     ggattgtctg agcctgttga agctaacttg cattcggtgt ccccacgcaa tgcctcttct       660
     caagctaaaa ccaagaaacg tgatccccgt cctccaccct tccttttgag gggaatcact       720
     gattttaggc aactaatttc cttactatct tctgtgacca atggttttcg cctcaagaca       780
     actggtaaat cttcctgtag ggttactgtg gatgacggca atgtttaccg tgtagtccag       840
     aagcttttca aggataatgg aattcctgtc agcacttttc agtttaaaaa tgaacgagcc       900
     tttcgagtcg tcatcaaggg acttcacgct tccactgaaa tagccgaaat tactgcgaaa       960
     cttaaagctt tgggacacaa ccctcggaat gtattcaacc cccctggtga aaatgggaag      1020
     gcgaaccggg atatattctt tgtggagctg gaaccagcta gaaacaacaa aaatgtatat      1080
     gatatccaga taattgacta ccaggtggtt aaagtggaac cgcagcttca gagaaagggt      1140
     cctttaaggt gtttccgatg tcaagaattt ggacattcta aaaatttttg ctcactcttg      1200
     ccaaagtgtg ccagatgtgc tggtgaccat gagacaaaag acaaggagag gtgcttggcc      1260
     ataaatgagg aacaactcaa gtgcattaac tgtggttcta atcatagtgc gtcttcccgt      1320
     cgatgtcctg cctatttaga ggctattgaa agacgtaagc ccactggttc tgtagagcgt      1380
     agacccactc aaaaacgtac ttttaagcct gccatgcccc cggctcaaaa tgcttggttt      1440
     nctacgcgtc tttctgcatc ctcaagtcag acttcgccaa cggctaattc acatccaagt      1500
     gaaaagacct ccttggttga acaacctact caggacaggc ttctggaatt tattaatgga      1560
     ttaaggaagc aacaagaggc tgctgcgata gcccaagcgg ctgcaattga taagttgttg      1620
     ttacgctttg atcaaatgat gtcagtaatg acgaccacac tacaaatgtt acagagcgtg      1680
     atttctaagc acgccaatct atcagggtca acgcaatgcg atgactaatt acggtataaa      1740
     tatcgttatt tggaacgcca acaacttagt tggcaaatca ctcgagattg agcacctcct      1800
     ccaggaacgc aacattgaca ttttattgat ctcagagaca cattttacca gccgctcatt      1860
     cttccacatt ggaggggatt ggaatgcgca ccacagtttc tgggggtgca ggcgatcatg      1920
     ccctcgggga aacaccctga tgtcagttat tgctgactca aatatgcaga ttttggctac      1980
     tggcggaccc actcattttc cttggatcaa tgaccacctc ccgacggcca ttgattttgc      2040
     tgtgtacaaa ggcatcccgt gcaaccacct tacaatctca gagtgcccgg gactttcctc      2100
     tgatcatatt ccgctcctga tatatttttg cgtggctgcc tatacgatcg ttaccaaatc      2160
     caggcttctt ccccggggct cggatcttaa aagattcagt gcgcaactta ctgctctgac      2220
     tcaggagcaa ccttctcttc tttctgtgga cgacgtagat tcctttgctg aggtcttagt      2280
     tgaacagatc catcaagctg cccctcctcc tagaagtata cctattcctc ctccatcttg      2340
     ggcttattca aagccagaaa ttgctgcctt ggccagaaag ggtcatgcac ttcgccgtgt      2400
     ctggatgagg acgaggcata ccatcgatat ggcaaggtgg aaggctactg tatcagagct      2460
     aaggaaagtc ctccgttcgg ccaagtcaga attttttata gacaagctca gtgcaattga      2520
     tcctaaccag aatcacggat ttgcgctctg gaaatgcacc cgcaacctta aaagacagcc      2580
     gcttcagagg ttttccctta aacgtggtga tgggacttgg gcccacagtg attccgagat      2640
     tgctgaagta tttgctgatg atcttgaaaa tcgctttact ccatttgaat ttgcaacaag      2700
     cgaagaagtc cagacaacaa tctctaggtt aggactttca tttggccctc ctgttactgt      2760
     ccgtccagta gacgaagatg aggtacgtgg tcatataaag cgactggtta ctactaaagc      2820
     tcctggcatg gacgcgattg atggcaaagt agcaaaggct ctgcctagct ctgtcattgc      2880
     acagctctgt ctcctcttta atgcttgcct ggaccttggt tattttccat caccttggaa      2940
     acgagcatta gtcacaatgg tggcaaaaaa aggaaaagac ccatgttgcc cggaatctta      3000
     taggccgatt agtttgctgt ccactttctc caagattttt gagcggatca tgcttggtag      3060
     acttctagct attaacgcct ttgaagacgc acttccgaac caccagtttg gtttccgtag      3120
     tcgccatagt gctatcgagc aagtgcacag agtaattaac catgtcctgg gggctttcga      3180
     agaccacaaa tactgctcag ccgtttttct cgacgttcga caggcctttg acagggtttg      3240
     gcacgaagga ctgttctaca agctaatgcc gcttttgcct gaaaggctct ggaatctcgt      3300
     tgtatcgttc ttagataata gggagtttgc tgtagacatt cgtggacacc gttctggact      3360
     tcgcccaatt cgtgctggtg tcccgcaggg aagcgtcctt ggtccggtcc tgtatacaat      3420
     ttacacttcg gatcttccaa acccagttgc tcgtggtaca ctcctggcca catatgcaga      3480
     tgacactgca tttcttgcag ctggtagcac cactacgtct gcgtcccgac gcgtccagac      3540
     attcttagac gaatttgagt gctgggcctc tcgatggaac attgcgctta atgttgacaa      3600
     aacgcaacat gccacttttg ctctccgccc tggccgttcg cgtagccttt acattgatgg      3660
     gaataggctc aagcacgaag ataaggtgac gtacctcgga gttaccttag accgtcgcct      3720
     ttgttggaag ggacaaattg atcgagtttg tggatcagca agaacaaaac ttgacaaaat      3780
     ggactggctc cttcgtccag gcagcggcct atcccttgaa gctaaggtgc ggctttttaa      3840
     ggccattgtc cttccaactt taaactgggg aatcacttgc tggggcacgg cctgtgattc      3900
     gtcactaaaa agggtgcaaa catgcattac aaaggctctc aggaggatgc taggggtgaa      3960
     gtggcaccat tatgtagaaa accgagttat gttccaggac acgggagtgc cgacggtaac      4020
     ggagacgatt tgctcacaca tgcaaactgt ctggcaagac atcttgcaac accgctgggt      4080
     cgacggcgtc tccgcagacg acacccggca gacttatgga ttctcggccg tgacagacac      4140
     ggtcgtcttc tgtaataaca catcttgatt aacttttgac cggctatgac cacacctgat      4200
     ttgctcaaga atggagcacc cgttacccgc tttttttggg atctttagaa ataattcgtc      4260
     aatacacgaa aacaaggtcc atccttgtgt ggcgtgttca acaaactata aaaaaaaaaa      4320
     aa                                                                     4322
//
ID   Jockey-1_Dro repbase;    DNA;    INV; 3906 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.07, Created)
DT   07-MAY-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila genomes: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_Dro.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RP   1-3906
RA   Jurka J. and Kojima K.K.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(7), 1321-1321 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. This family is found from several
CC   Drosophila species: D. eugracilis, D. ficusphila and D.
CC   bipectinata.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..1346
FT                 /product="Jockey-1_Dro_1p"
FT                 /translation="MPRQRKNITVNKALRDEFTNYYRPLQTIEDNNNIDDV
FT                 EEEPEVVPKEATKMPPITVLKQTAKFLHDVLIRIKISDYYIKTISIGIKIF
FT                 TTGEENYNKICTQLRDLKCEFYSYDCKKTKPYKAVLSGLDKLPNADVKTLL
FT                 NNMGLKCIEVKTIEKTTKNDNKLLLYVVYFANKSITLHQLRKDYIYINHTK
FT                 VRWEYKSKPSSKLTQCYNCQLYGHGSMHCAVKTSCAHCAGPHKTIECPDST
FT                 KLKCANCKGNHPSSDPQCPCRLSYQSLLQRRSSSGNRFIKPRYENQTARGA
FT                 NRNMLVSAVPRQHSTPIRPPNLPQVSYQSYRNAVVNNDSNPPSSPDLFTID
FT                 EITALTTELINKLSACTSKSEQFNIITQLAIKYVYSNK"
FT   CDS           857..3430
FT                 /product="Jockey-1_Dro_2p"
FT                 /translation="MCTPISKSLTHINIMAWNARAVSSKRLELVNFLTKNQ
FT                 IHVCLVSETWLTDKIKLSIPNYKVYRNDRGTTKGGGVAIIVENSIQHEQIK
FT                 SIKTHLIENIAIKINIDSNNSLKIYSAYFPGASAKCLNNPCNFPLTNKHIK
FT                 TMFRADLVKFSQIDGHYILGGDXNCRNRLWNCARANSFGNCLHELLSTGKF
FT                 SLLYSKDPTYLPANFSSKPSTLDIFLTNSPINFSEPIVHTDLSSDHLPVLC
FT                 KFTKGVHCKNVTHLQYSKANWKKFKHILNVATLANLEALSDFEAXQEVIDV
FT                 MVNILQADIHNAIKQCVPEAPVRPIVLKIPRWIKNIISDRNTNQRKWIRTR
FT                 QPIFKARVNYLNHMISQKLFELNNEKWNLKLSKLDKNSRPFWKLTKIIKNK
FT                 KQFIPSFFHNNIVFTTRAEKADILAEVFESKHHITDSFSDYNTSTEVQNTL
FT                 SEFNNLNDLTFTPEITPKDIDVIIKSLKNNKSPGIDKIPNICLKNLPKNAI
FT                 DFLALIMNKCLQIGYFPKNWKIARIIPIPKPGKPPDCPNNYRPISLLCGFS
FT                 KIFERLIKSRLNLHVEDNNILPPVQYGFRAFLNCLHPLDQITNYIKESFAR
FT                 KESVGMVTLDIEAAFDTVWHHGLIHKLITCNSPIYLTKIIQSFLSDRYFYV
FT                 SLDGTNSNKKLIKAGVPQGSVLGPVLYNIYTYDIPLFQRCHTLIFADDTAL
FT                 FSSGTTYNSIENELQMSLDAISSYFYKWKIKINASKTKSIFFTKKRKLCFL
FT                 PNSELKLNNTDIKWENSIKYLGINFDKKLIFNGHISHTIDKINRTIRILYP
FT                 FINRRSNLSNHNKLTIYKQIFLPIMLYGSEIWGCSAKTHINKLQLAQNKIL
FT                 KMIYN"
XX
SQ   Sequence 3906 BP; 1382 A; 833 C; 601 G; 1087 T; 3 other;
     tcagtctctg acttacactc cgagtgtacg gttgtcttgc atacgttgat ctcgtttgtt        60
     atctttcgtt attacgatca gcacatcgtg ctatctaaat aaagagctaa aagttttgtc       120
     gattgaaagt gcatattatc ataaacataa aacgtcaaaa gacaattact ggcgatgctg       180
     tagcatcagc cgctattaac aaaatgccac gtcaaaggaa aaatattact gtgaacaaag       240
     ctcttcgtga cgagttcaca aattactatc gtccgcttca aactattgag gacaacaaca       300
     acattgatga cgtcgaagag gaacctgaag tcgtcccaaa agaggctact aaaatgccac       360
     ctattactgt ccttaaacag actgccaagt tcctacatga tgttctcatc cgcattaaaa       420
     taagtgacta ctatatcaaa accatatcta ttggtatcaa aatwttcacc acaggtgaag       480
     aaaactacaa taaaatttgc actcagctgc gtgatctcaa atgcgaattc tattcgtacg       540
     attgcaaaaa gaccaaacct tacaaggcgg tactttctgg tcttgacaaa ctacccaatg       600
     ctgacgtcaa aactttgctt aataacatgg gcctgaaatg cattgaggtt aaaacaattg       660
     aaaaaacaac aaaaaatgac aataagctat tgctctatgt agtctatttc gctaataaaa       720
     gcatcactct gcaccagcta cgcaaagact acatatatat aaaccatacc aaagtacgat       780
     gggagtacaa atcaaaacca agcagcaaac tgacacaatg ctacaattgc cagctttatg       840
     gacatggatc catgcattgc gctgtaaaga cctcttgcgc ccactgtgcc ggcccacaca       900
     agaccattga gtgccctgac agcaccaaac taaaatgcgc aaactgcaaa gggaatcacc       960
     cctcctccga ccctcagtgc ccttgccgac tctcttatca gtcgcttctc caacgacgat      1020
     cgtccagcgg taatcgtttc atcaaaccga ggtacgagaa ccaaacagct cgtggagcaa      1080
     accgaaatat gctcgtatca gccgtaccaa gacagcactc aactccgatt cggccgccaa      1140
     atcttcctca agtttcatac cagagctaca gaaatgcagt cgtaaacaac gactcaaatc      1200
     caccgagttc tcccgacctt tttaccatcg acgaaatcac agctcttacg actgagctca      1260
     taaataaatt gagtgcctgt acctcaaaaa gtgagcagtt caatataata actcaacttg      1320
     ctatcaaata tgtgtactcc aataagtaaa tcactcactc atattaatat catggcatgg      1380
     aacgctcgtg ccgtcagtag taaacgtctt gagttagtta acttcctcac taaaaaccaa      1440
     atccatgttt gtcttgttag cgaaacatgg ctaacggata aaattaaact gtctatacca      1500
     aattataaag tttatcgaaa tgatcgtggt accacaaaag gtggaggtgt tgcgattata      1560
     gtagagaaca gtattcagca tgaacaaatc aaaagtataa agacccatct tatagaaaac      1620
     attgctataa agataaacat tgactccaat aattctctca aaatatattc agcctatttt      1680
     cctggtgctt cagctaaatg cctaaacaat ccatgcaact ttcctttaac aaataaacac      1740
     ataaaaacaa tgttcagggc cgacctagta aaattttcac aaattgatgg ccattacata      1800
     ttgggtggtg acttsaactg cagaaatcga ttatggaatt gtgccagagc taactcgttt      1860
     ggaaattgcc ttcatgagct tttgtcaaca ggaaaatttt cgcttttata ctccaaagat      1920
     ccaacctatt taccagctaa ctttagtagc aagccttcaa ctcttgacat tttccttaca      1980
     aattcaccga taaatttctc cgagccaatt gtgcatactg atctctcatc ggaccattta      2040
     ccagtacttt gtaagtttac taaaggagtt cattgcaaaa atgttacaca cttgcaatac      2100
     tccaaagcaa actggaaaaa atttaagcat atcctcaatg ttgctacctt agccaatctc      2160
     gaagctcttt cggattttga agcggakcaa gaagtaatag atgtaatggt caatattctt      2220
     caagctgaca tacataatgc aataaagcag tgtgtacccg aagcgcctgt taggcccata      2280
     gttttgaaaa ttccacggtg gataaaaaat ataatcagtg atagaaacac aaatcaaaga      2340
     aaatggatta gaaccagaca accaatcttt aaggctaggg taaactattt gaaccacatg      2400
     attagccaga aactatttga gcttaacaat gaaaaatgga atcttaaact gtctaaattg      2460
     gacaagaatt ccagaccatt ttggaagctt actaaaatta ttaagaacaa aaaacagttt      2520
     atcccaagtt tctttcacaa taatatagtg tttaccacaa gagcagaaaa agcagatatc      2580
     ttagcagaag tttttgaatc aaaacatcac attactgaca gtttctcaga ctataatacc      2640
     tcaactgaag tccaaaacac cttaagcgaa tttaacaatt tgaatgacct aacattcaca      2700
     cctgaaatca ctcctaagga tattgacgtc ataataaagt cactaaaaaa taacaaatca      2760
     cctggcattg ataaaattcc aaacatttgt ctaaaaaatt taccaaaaaa tgcgatagac      2820
     tttcttgctc taatcatgaa taaatgtctt caaattggtt atttccccaa aaattggaaa      2880
     attgcaagaa ttattccaat tcctaagcca gggaagcccc cggattgtcc aaacaattac      2940
     cgtccgataa gtttgctatg tggtttttca aaaatttttg aaagattaat taaatctagg      3000
     ctcaatctgc atgtggaaga taataacatt ttacccccag tccaatatgg ctttcgtgct      3060
     tttctgaact gtcttcaccc acttgatcaa atcactaact atataaagga aagttttgca      3120
     cgaaaagagt cagttggcat ggtaacgctt gacatagaag ctgcttttga tactgtttgg      3180
     caccatggtc taatccataa gcttatcact tgtaacagcc caatatattt aacaaagatc      3240
     atccaaagtt ttctctcaga taggtacttt tacgtcagtc ttgatggtac caattcgaat      3300
     aaaaaactaa tcaaagcagg tgtcccacag ggctctgtgc tcggaccagt tctttataac      3360
     atttacacct atgacatccc cctatttcaa agatgtcata cacttatatt tgccgacgac      3420
     acagccctgt ttagctctgg cactacttat aattcgatag aaaacgagct ccaaatgtcc      3480
     ttagatgcaa tatcttctta tttttataaa tggaaaatta aaataaatgc ctcaaaaacg      3540
     aaatcaattt tcttcaccaa aaaacggaaa ctgtgttttc tgccaaatag tgaacttaaa      3600
     ctaaataaca ctgacattaa atgggaaaac tccataaagt atcttggcat taattttgac      3660
     aaaaaactta ttttcaatgg tcacataagt cataccattg ataaaataaa taggaccatc      3720
     cgaatattgt acccttttat aaatcgcaga tcaaatctgt caaatcacaa taagctgaca      3780
     atatataaac aaatattttt acccataatg ctttatggat ctgaaatctg gggctgtagt      3840
     gccaagaccc atataaataa attacaactt gctcaaaata aaatcttaaa aatgatttat      3900
     aattta                                                                 3906
//
ID   Jockey-1_DSe repbase;    DNA;    INV; 4447 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.08, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from fruit flies: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4447
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1641-1641 (2012).
XX
RN   [3]
RP   1-4447
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (08-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   >99% identical to consensus.
CC   [3]: sequence updaed to full length. This family are also present
CC   in Drosophila melanogaster.
XX
FH   Key           Location/Qualifiers
FT   CDS           320..1609
FT                 /product="Jockey-1_DSe_1p"
FT                 /translation="MDWQAPPRTHKLGTTPRKKALRTRKSSSSSEGSTSHT
FT                 EPSEIKRKPAKKAQGEELEEKPSTSAALRKKLANNAFALLSSEEDEDDQES
FT                 SDDEPGPKDDSKPKTPEKPKPTPKTIKPPPIFIPDVTNISALVKMITTLVG
FT                 PKNNFTYKTVNGNNVRVMMPDKESYTALRLQLVAQNKRHRTFQPKDERAYK
FT                 VVIKGLHHSTDREEIIEDLRRQGHAVRDLHNPIGRRTKEPLGIFFANLEPS
FT                 SNNKDVYQVKRICRSVVTIEPPQKFNDVPQCFRCQGFGHTQRYCFLEYRCV
FT                 KCGGPHESRACEKREDDKACCFHCQADHPASFKGCPAYKRAKALAAPKTRP
FT                 VANANKAPPVASPNVTSGRSYRDALNGVHAAPQNPTTPVQTQTETPHSGQI
FT                 EAMFARMEGMMERMMERMFTQMTQLVATILNSKSCN"
FT   CDS           1603..4299
FT                 /product="Jockey-1_DSe_2p"
FT                 /translation="MQLKLHLVVWNANGLQNSKAIVEHHLKTHQIDILLVA
FT                 ETHFSPRSHFNISGYDLIHADHPSGRARGGAAILIRSGIQYLELPAFQQDW
FT                 AQCPVIRIASPQGDLDIGAVYFPPRYRITASHLSEFFEHFGPRFIAAGDYN
FT                 AKHSWWGSRANNPKGKTLFGYLQRHRLDCHSTGEPTHWPTNPLNTPDLLDF
FT                 AVSKGIGHAKISCTTNADLLSDHCAINVLINTPVLRKTPLRRLTGKYTDAA
FT                 KFASWMLSTVNPNPILNTPRDIDEAIGNLTRQMQNAAEFASPPPPKTARTP
FT                 SRDLHLWSPEIAALVTEKRRLRRVWFLTRNPRDKTALNHATKELKDKISSL
FT                 RQDSFLRFLEELSPGDPDHNLWNVTRHIKRPAKKVSAVRKADGSWCRSDAE
FT                 RAEAFAEHLYNAFSPFDCCTAEEHAETARFLNSPSSPGPPLEPVDPEEVAQ
FT                 EIALLKNNKSPGLDRIDAAALKMLPFRCTQMLASIYNSCFRLGYFPEEWKR
FT                 AEVIVLLKPGKPEANLASYRPISLLAILSKILERVFLRRVLPVLDEAGLIP
FT                 DHQFGFRRSHGTPEQCHRLVERILEAFEQKKYCCAVMLDVKQAFDRVWHPG
FT                 LLHKLKSYLPSPHFTLLKSYTEGRAFQVRCGSAISLPRLIRAGVPQGSVLG
FT                 PILYTLYTADLPIIPSRNLTIATYADDTAFLASSSDPREASETIQRQMDAL
FT                 HPWLSRWNIVVNAEKSTQTTFALRRGDCPPVTLNGVIIPNAPAPKYLGLTL
FT                 DRRLTWRPHIVSKRIQADARLRQMQWLIGRGSKLRQNHKILVYKAILKPIW
FT                 TYGIQLWGTASHTNRLRIQRFQNRCLRIACNAHPYHENVAIHRELGIPQVA
FT                 DEISRLSERYLKRLENHPNHLATNLLDNSQTSRRLMRRHPLDLPQQ"
XX
SQ   Sequence 4447 BP; 1266 A; 1343 C; 1017 G; 821 T; 0 other;
     gtcgcgatcg aacactcgac gagtgcagac gtgcctgcgg atcgacagca aattgttcac        60
     agttttaagt cccgttactt gtgcccagcc acttcgcgtc gcgtgatctt gtcgcgcgtt       120
     ttgattggcc cagccaacgt acctaacggt agttcgcact aacaccatcg cacacccgag       180
     tgtgcgtgtt atcagcgcaa aaaacccagt gctcgaagca gcggtatatt tgcaaagcag       240
     cagccacgtg ctgcctggct caccggctta cggtgcccag cttccccccc ctcctcactc       300
     cttatcaact ttggagaaga tggactggca ggcccccccg cgcacccaca agcttggaac       360
     aacaccacgc aaaaaggctc tgagaacacg caagagcagc tccagcagcg agggaagcac       420
     ctcgcataca gagccgagcg agataaagcg aaaaccggca aagaaagcac agggagagga       480
     gctggaagag aagccaagca ctagcgcagc tctgcgcaag aagctcgcca acaacgcctt       540
     cgctttactc tcgagcgaag aagacgagga cgaccaagag agctctgatg acgaacccgg       600
     acctaaagac gattccaagc ccaagacccc cgagaaacca aagcccaccc cgaagaccat       660
     caagccacct ccgattttta tccccgatgt gaccaacatc tcggcactcg tcaagatgat       720
     cacgactctt gtaggcccga agaacaattt tacctacaag accgtgaatg gcaacaacgt       780
     acgtgtcatg atgccggaca aagagtccta tacagctctg cgtctccaac ttgtggccca       840
     aaacaagagg catcggactt tccagccgaa agatgaacgt gcatacaagg ttgtcatcaa       900
     aggactccac cactccaccg atcgtgagga aatcattgaa gaccttcgca gacaagggca       960
     cgctgttaga gatctgcaca atcccattgg cagaagaact aaagaaccgc tgggaatatt      1020
     cttcgccaac ctggagcctt ccagcaacaa caaagacgtc taccaagtca agcggatctg      1080
     caggtcggta gtaaccattg aaccgccgca gaagttcaac gacgtgcctc aatgcttcag      1140
     gtgccaagga ttcggtcata cacagcgtta ctgcttcctg gaataccgat gtgtaaagtg      1200
     tggaggccct cacgaatcga gggcatgtga gaagagggag gacgacaaag cgtgctgctt      1260
     ccactgccag gcggaccatc ctgcgtcttt caagggatgc cctgcataca aaagggccaa      1320
     agcactcgct gctccgaaaa caaggcccgt cgctaatgct aacaaggcgc cgcccgtggc      1380
     atcaccaaac gtcacctctg gcaggagcta ccgagacgcc ctcaacggag tgcacgcagc      1440
     accgcagaat cccacaaccc cagtccaaac ccaaacagaa accccacact ccggtcagat      1500
     agaagcgatg ttcgctcgca tggaaggaat gatggaaagg atgatggagc gcatgttcac      1560
     ccagatgaca cagctggtgg ccaccattct caacagcaag tcatgcaatt aaagctccac      1620
     ctagtcgtct ggaatgcgaa cggcctgcag aacagcaagg ccatagtcga gcaccatctg      1680
     aagacccacc agatcgatat cctactcgta gccgaaaccc acttctcccc cagatcccac      1740
     tttaatatca gcggatatga cctcatccat gcagaccatc cttctggcag agcacgcggt      1800
     ggagcagcca tcctcatcag gagcggtatt caatacctag agctgcccgc gtttcagcaa      1860
     gactgggcac aatgtcctgt catcaggatt gccagcccgc aaggagattt agacattgga      1920
     gcggtctact ttccccccag ataccgcata acagcatctc acctcagtga gttcttcgag      1980
     cattttgggc cccgcttcat agcagctgga gattataacg ccaaacattc ttggtgggga      2040
     tcgcgcgcca acaaccccaa agggaaaact ctgtttgggt acctgcaacg ccaccgactg      2100
     gactgccact ccactggcga gcccactcac tggccaacga atcccctcaa tactccagac      2160
     ctgctggact ttgctgtgtc gaaaggcata gggcatgcga agatcagctg cacaacaaat      2220
     gctgatctcc tgtcagacca ctgtgcaata aacgtgctaa tcaacacgcc agtcctcagg      2280
     aaaaccccgc tcagaaggct cactggaaaa tataccgacg ccgccaagtt cgcgtcctgg      2340
     atgctctcca ccgtcaatcc gaaccccatc ctcaacacac ccagggacat tgatgaagct      2400
     atcgggaatc tcaccaggca gatgcaaaac gctgcggaat tcgcaagccc accgccacca      2460
     aagactgcga gaacacctag cagggacctc cacctctggt ccccggaaat tgcggcactc      2520
     gtgactgaga agaggcgtct caggagagtt tggttcttga cgcgcaatcc aagagacaaa      2580
     acagcgctca atcacgccac aaaggagttg aaggacaaga tctccagcct acgccaggac      2640
     tccttcctca gattcctcga ggaactctct cccggggacc cagaccacaa tctgtggaac      2700
     gtcacccgcc acattaaacg accagccaaa aaggtttccg cagtgcgcaa agcagatgga      2760
     tcctggtgcc gttcggatgc tgaaagagca gaagctttcg ccgaacacct ttacaacgcc      2820
     ttctctccgt tcgactgctg cactgccgaa gaacatgctg aaacagcccg gtttctcaat      2880
     agcccaagct ctcccggtcc cccgttggaa ccagtcgacc ctgaggaagt tgcgcaggag      2940
     attgctctac tgaagaacaa caaatctcca ggcctggatc gtatagatgc ggcggcccta      3000
     aaaatgctcc cattccgctg cacacaaatg ctggccagca tttacaacag ctgcttccgg      3060
     ctagggtact tcccggaaga gtggaaaaga gcagaggtga ttgtcctcct caagcctggt      3120
     aagcctgaag ccaatctcgc ctcctatcgt ccgattagtt tgctggcaat cctctccaaa      3180
     atactcgaaa gagtattttt gcgcagagta ttgccagtac tggatgaggc tggtttgatc      3240
     cccgatcacc agtttggctt caggcgctcc cacggaacac cagagcaatg ccaccggcta      3300
     gtcgaacgga tcctcgaggc attcgagcaa aagaaatact gctgcgctgt aatgctcgac      3360
     gtgaagcagg cattcgacag agtttggcat cctggactcc tccataaact caaatcctac      3420
     ctcccaagcc cccattttac cctcctcaaa tcctacactg agggaagagc attccaagtc      3480
     agatgcggaa gtgcaataag cctacccaga ctgatcagag ctggagttcc gcaaggcagt      3540
     gtgctcggac caatactgta caccctttac accgcagacc ttcccataat cccctccagg      3600
     aacctaacta tagcgacata tgcagatgac acggctttcc tcgcctcttc atccgaccca      3660
     cgagaagcct ccgaaacaat ccaaaggcaa atggacgcgc tacatccctg gctcagcagg      3720
     tggaacatcg tagtgaacgc ggaaaaatct acccaaacaa catttgcact aaggagagga      3780
     gactgcccac cggtcacgct aaacggagtc atcattccca acgcacccgc acccaagtac      3840
     ctaggactta ccctggaccg caggctcact tggcgtcccc acatcgtcag caaacgcata      3900
     caggccgatg cgcgtctgag gcagatgcaa tggcttattg ggagagggtc caagctaagg      3960
     cagaaccaca aaatcctggt gtacaaggca attctcaagc ccatctggac ctacgggata      4020
     cagctatggg gcacggcaag ccacacgaat cgcctgcgta tacagcggtt ccagaatagg      4080
     tgcttgagaa ttgcctgtaa tgcgcatccc taccacgaga atgtcgccat acatagggaa      4140
     cttggaatcc cacaagtcgc tgatgaaatc tccaggctca gcgagagata cctgaaaagg      4200
     ctcgaaaacc accctaacca cctcgccacc aacctgttag acaatagcca aacaagcaga      4260
     cgtctcatga ggagacaccc tctcgatctt ccacaacaat agacaacaca tataaaaccc      4320
     gccacaaata catgtacaat agtatccctt aagctaatgt tcccccgcaa aaccatttaa      4380
     ttattgtcca ctaggacaga ttttaaataa ataaacgcac gcaaaaaaaa aaaaaaaaaa      4440
     aaaaaaa                                                                4447
//
ID   Jockey-1_DSer repbase;    DNA;    INV; 4675 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4675
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2055-2055 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           200..1810
FT                 /product="Jockey-1_DSer_1p"
FT                 /note="zinc finger."
FT                 /translation="MQKPPTAGPSNKEEATLSRRLTREDNSRSATPTSSID
FT                 VAAELRSAALKRAQPKKXLGSSQSTVADLPEWKTKGINHVFKSSTIDWQRV
FT                 QPKRRRLQNQAPQXKNVIASQLPTVSRSQQPNTPLGHNQFASLMSVDDDDI
FT                 VEVDEVKDAVNTKPDSPLKIKKPRPIRIPDVVDINALEAFLSPIIPSDDFE
FT                 FRLSPAGDVRIYAKDSNTHRQILKLLNAHNVEYTHFCLDEDKTFRIVVRNL
FT                 PASTPVDTIVQEFKKQGHSVVNAYNPKSRLPHRVNSDGSINAQPKQNIWFL
FT                 NLSPAPNNRDVFKISRVGRMRVSIEVPRKNNTLRQCFRCFDFDHTKNYCLK
FT                 RPVCGRCSLEHPTGSILCLAKTTNDLICVNCLGNHAAYDRACPVYSLKLNN
FT                 RRSGINLAAPRQPSSRCQNQSIPSLAVRNGLSFADVIGQRSKPISQMDSSP
FT                 RNWNTNNYNTEFPNLPGNGKRARSRTRVRAPSSAHVAPSASTPDLLSLFQM
FT                 MQELQRVVAQLSLSVAAIAQNVNQIQGGSSLTIPRYSAHYD"
FT   CDS           1806..4514
FT                 /product="Jockey-1_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTNDLRIGFWNARSLASNANELLIFTLQHKIDIMLIA
FT                 ETYLHPGINFTLAGFECLRADHPGNTRRGGSAILIKEGISYYQLHVVRDWK
FT                 VQLTTAMISSSSGELLIGAAYLPPSLGWTSAEFDHLLSELGHKFILGGDFN
FT                 AKHRLWGSYRADGRGSALHDAITNSSAQILATGSPTCFPSNSRATPSCIDF
FT                 FIYKSITSNLLSIRNEHDLSSDHLPLVATFASAPTTIVSRSSLLKPGFCLS
FT                 AFQDSLDNSLELSTSLNTKEDVDSAINILLTRIGEAAAVAAPPVSPGSLTA
FT                 RRHCVLSSEVEGLLLLKKRLRREYIRTSDMRINRLFRRISNRVRKKLSLLK
FT                 AEATDRMLETVTADASSNYSLWKLTGSYKRQATPKFPIKTEDGTWARSTQD
FT                 RVEAFAQSLEDRFTPFGTASVRRQQIVADKLAITHQMELPVPPITVQEVKE
FT                 DIKKLNVKKAPGDDQIDNRIARTLPLRALLYLILIFNASLRLSYFPKAWKS
FT                 ARIVMILKPGKPPEDLNSYRPISLLSTFGKLLERCILRRLRQSQLAMNALP
FT                 KFQFGFRLRHGTPEQLHRVVEYILEGFHSKQYVVAAYLDIQQAFDRVWHPG
FT                 LLYKLKPLLNPQLFEMVRSFLSERTFKVVQDGTLSSLRPIKAGVPQGSVLG
FT                 PTLYSLFTHDMPKSTGHDHNSMLATFADDTAVLSRSNCIYDATDMLQLYLK
FT                 RFENWACRWNISINPAKCAVVTHSLRKESCPGLFLHGELLEQVRDYKYLGV
FT                 TLDTRLTFAKHTRLVRRSLEDKARRLYWLLKANNHLSLANKVQIYKSILAP
FT                 TWRYGIQVYGIAAKSNLSYIRVFQSKFLRRITGAEWFIRNTDLARDLKVPL
FT                 LGDIINEQAEHYKNKLMSHPNILARRLASRRARRRLKRIHPSDLPRRKIY"
XX
SQ   Sequence 4675 BP; 1296 A; 1151 C; 1009 G; 1217 T; 2 other;
     ttcgacttta ctgtcaacca gttgggacgt ctcgttttta ttaagctcgg aaaaaaaaaa        60
     aactacggaa atatcgaatc tacaactaaa tttttctaaa tttcattttg gaaaattctt       120
     caaaacaatt taaaaagaaa acagtattca ttgtgcgaag caggatacct tgcccggctg       180
     tggcttggtg gtttctgcta tgcagaagcc acccacagct ggcccctcga ataaggagga       240
     ggctactcta tctcgacggt taacccgcga agacaactct cgatcggcta cccctactag       300
     ctcaattgac gttgcggctg agctccgcag cgctgctctc aaacgtgccc agccaaagaa       360
     awcccttgga tcctcccaga gtactgtcgc tgaccttccc gaatggaaaa ctaaaggaat       420
     caaccatgtc tttaagtcga gcactattga ttggcagcgg gtgcagccca aaagacgacg       480
     attgcaaaat caggcaccgc agttmaaaaa tgttatagct tcgcaactgc ccactgtatc       540
     acgttctcag cagccaaata ctccacttgg tcataatcag tttgcctcgc tgatgagcgt       600
     tgatgatgat gacatcgtgg aagtcgatga agtgaaggat gcggtcaata caaagccaga       660
     ttccccattg aaaatcaaga aaccaaggcc cattagaatt ccagatgtcg ttgatattaa       720
     tgccttggag gccttccttt cccccattat cccatctgat gattttgaat ttcgattgtc       780
     tcctgctggg gatgtcagaa tttacgcaaa ggattctaac acccaccgcc agatactcaa       840
     gttgcttaat gctcataatg ttgagtatac ccatttctgc ctagacgagg ataaaacgtt       900
     ccgtatagtg gtgcgtaatc tacctgcctc aactcctgta gacacgattg tccaagagtt       960
     taaaaagcaa ggccactcgg ttgtcaatgc gtacaatccg aagtcgaggc ttcctcatcg      1020
     agtcaactct gatggaagta tcaatgccca gccgaaacag aatatatggt tcctaaacct      1080
     gtccccagct cccaacaaca gggacgtttt caagatttct agagttggcc gaatgcgagt      1140
     atcaattgaa gtacccagaa agaataatac tctgaggcaa tgcttcaggt gtttcgactt      1200
     cgaccacact aaaaattact gtctaaagag gcccgtgtgt ggacgatgtt cacttgaaca      1260
     cccaactggt tctattctgt gcttggcaaa gactaccaac gacctcattt gtgtaaactg      1320
     cctgggtaat cacgcggctt atgatcgagc ttgtcctgta tattccctca aactgaacaa      1380
     tcgtcgatct gggattaacc ttgccgctcc acgacaacca agttctagat gtcaaaacca      1440
     atctatcccg tccttggctg tccgcaatgg actgtccttt gcggatgtta tcgggcaacg      1500
     tagtaagcct atttctcaaa tggactcgtc tcctcgtaac tggaatacaa acaactataa      1560
     cacggagttt cctaaccttc ctggtaatgg caagagagcg agatccagaa ctagagtccg      1620
     tgctccttcc tctgcgcatg ttgctccttc tgcctccact cctgacttgt tgagtttgtt      1680
     ccaaatgatg caagagctcc aaagggtggt cgctcagcta tccctctcag tggcagcaat      1740
     agcccagaat gtgaaccaga ttcagggagg atcctctctg acaattccca gatatagtgc      1800
     ccattatgac taatgatctc cgcattggat tctggaacgc ccgcagcctg gcatcaaatg      1860
     cgaatgagct gcttatattt actctacagc ataaaattga catcatgtta attgcggaga      1920
     cttatttaca ccctggaatc aactttactc ttgcaggatt cgaatgcctg agagctgacc      1980
     accccggcaa tactcgccga ggtggctcag ccattctgat caaggaagga atttcctatt      2040
     accaacttca tgttgtcagg gattggaaag ttcaactaac taccgccatg atctcatcta      2100
     gcagtggaga gctattgatt ggtgcagcgt atcttcctcc ttcattaggt tggactagtg      2160
     ctgaatttga tcacctcctt tcagaactgg gccataagtt catcctaggc ggggacttca      2220
     acgcaaaaca tcgactttgg ggtagctaca gagccgacgg tagagggagc gctctacatg      2280
     atgctattac gaattcttca gcacaaattc tagcaactgg aagccctacg tgctttccat      2340
     ccaattctag ggccaccccg tcctgcattg acttttttat ctacaaatcg attacaagta      2400
     acctgctttc catcaggaac gagcatgatc ttagctctga tcacttgccg ctggtagcaa      2460
     catttgcgtc tgctcctaca accattgtct ctagatccag cctgctgaaa cctggatttt      2520
     gtctctccgc cttccaagat tcactggata actcccttga gctttccacc tccctaaaca      2580
     cgaaggagga cgtggattca gccattaaca tccttcttac aaggattggg gaggctgctg      2640
     cagttgcggc ccctccggtg tctccaggct ctcttacggc aaggcgtcat tgtgtgctct      2700
     cttctgaagt tgagggattg ctgttgctga agaagaggct taggcgagag tacatccgca      2760
     catccgacat gagaatcaac agattgttca ggaggatttc caacagagta cgtaaaaaat      2820
     tgtcgttact caaggctgaa gctacggatc gcatgctgga aaccgtgaca gctgatgcga      2880
     gctccaacta ttccctttgg aagctgactg gatcctataa aaggcaagct actcccaagt      2940
     ttccaatcaa aacagaggat ggtacatggg caagatcaac acaagacaga gttgaagctt      3000
     ttgctcaaag tctagaagat agatttactc ccttcggaac agcctctgtc cggagacaac      3060
     agattgtggc tgacaagctt gcgattacac accaaatgga gcttccggtg ccacctataa      3120
     ctgtgcagga ggttaaggag gacataaaaa agttaaatgt caagaaagcc cctggagatg      3180
     accaaattga taatcgtatt gcacgaacgc tacctcttag agcactgcta taccttatac      3240
     tcatcttcaa tgcttccctg aggttgagct acttcccaaa ggcttggaag agtgctcgga      3300
     ttgtaatgat ccttaaacct gggaaaccac ccgaggacct aaacagttat cggcctatta      3360
     gcctcctttc cacatttggt aagctgctgg aaagatgcat ccttagaaga ttacgtcagt      3420
     ctcagttggc aatgaacgct cttcccaaat ttcagtttgg gttcagactt aggcatggca      3480
     cccctgaaca gctgcaccgt gttgttgagt atatactcga ggggtttcac tctaaacaat      3540
     acgtggtggc tgcctacctg gacatacagc aggcttttga tagggtgtgg catccagggc      3600
     tactctataa actcaagcca ttactaaacc cacaactgtt cgaaatggtt aggagcttcc      3660
     tctctgaaag gacattcaaa gtggttcagg acggtaccct atcctctcta aggccgataa      3720
     aggctggagt tccccaagga agcgtgctgg gaccgacgct gtacagcttg ttcactcatg      3780
     acatgccgaa gtccacggga catgatcata attctatgct ggccacattt gctgacgata      3840
     ctgctgtcct ctccagatcc aactgtatct atgacgccac tgatatgctt cagctatacc      3900
     tcaaaaggtt tgagaattgg gcctgtcgct ggaacatttc aattaatccg gcaaagtgtg      3960
     ctgtagtgac gcactccctc agaaaggagt cgtgccctgg actgttcctg catggagagc      4020
     ttcttgagca ggtcagagat tataaatacc tgggggtcac cctggacact agattaacct      4080
     tcgccaagca tacaaggtta gttaggcgtt cattggagga taaagccaga aggctgtact      4140
     ggctcctaaa ggcaaataat cacctgagtc tggcgaataa ggtccagata tacaagtcca      4200
     tacttgcccc tacttggaga tatgggattc aagtttatgg catagcggcc aaatctaatc      4260
     tgagttacat ccgggtcttc caaagcaagt tcctgcggag aattactggt gctgagtggt      4320
     ttattcggaa cactgaccta gcgagggacc ttaaagttcc cttgttaggg gatattatca      4380
     atgaacaagc cgaacattac aaaaataagc tcatgtctca cccaaacatt ctagccagga      4440
     gacttgcgtc tcggcgggca aggcgcagac ttaaaaggat tcatccctcg gacctaccaa      4500
     gaaggaaaat ttattaaaca ctaactaaac tccctgccac ttgttacttc ttcacttctt      4560
     acacttttgt aataatccaa tgaactcctc cgctcactat tgcataagtt gctacactac      4620
     agtaatttgc aataataaat tcagtcaaaa tgggaaaaaa aaaaaaaaaa aaaaa           4675
//
ID   Jockey-1_DSi repbase;    DNA;    INV; 4396 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.08, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 4)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DSi.
XX
NM   Jockey-1_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4396
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(8), 1642-1642 (2012).
XX
RN   [3]
RP   1-4396
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [3] Sequence updated to full length; >99% identical to the
CC   consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           237..1511
FT                 /product="Jockey-1_DSi_1p"
FT                 /translation="MDWQATPCAHKPGKSTPCKKARRVRESSPSSDSSTSH
FT                 SEPGKRKPVSKPTPNISAAYRRRLANRFAILSNEEDGNDDDEQGIQDGEPG
FT                 PAATKTPGKPKTTLRTFKPPPIFIPDVTNIKAFTNSIAGVLGNDVEFTLKM
FT                 ASNNNVRVMTPDKESFSALKDFLAKSNKRFQTFQPRDERAYRVVIKGLHYS
FT                 TDPEEIRDGLNRHGHKVRDLYNPTQRSTKKPLNIFFANLEPAKNNKEAYKV
FT                 TRLCRSVVTIEPPIKFNDVPQCYRCQAFGHTQRYCHLEHRCVKCGDSHPTV
FT                 ECKNNNKPAHCLHCEGPHAASYKGCPAYKKAKSMLAPKLASAPRAHYTVSS
FT                 SKVTPNVSFANAVKQATDETHAIPHTQANFDNLMETIMGRMEAMFEKMMEK
FT                 AMSQTNQMMEKVMSQMNQMMATVCKSLCNQH"
FT   CDS           1499..4207
FT                 /product="Jockey-1_DSi_2p"
FT                 /translation="MQSALDITIWNANGLINNRPEVELYCKTNQADILLIS
FT                 ETHFSDRSYFTLRGYDLVSAIHPNGSARGGAAILIRSSIKFDTQPPIQEDW
FT                 VQCARISVSTTHGDITLAAAYCPPRFRATDDCFSSLLDSLGPKFVIGGDFN
FT                 AKHTWWGSRVCNPKGRALCRQVLSRNLNCHGTGTPTYWPTDPAKTPDILDF
FT                 AISGGLDPARIQTREVEDLLSDHSAIAVSVYASAMLRSAGKKLIFKTSDIS
FT                 KYHHWLNNSTVTNPPLDTPELIDAAVVNLTSQIQEAATYAAPRFSNQTRDR
FT                 SRDVHFWNPRVNELKSEKRRLRRVWFLSRNPRDKTALNRATKELKETLVRL
FT                 RKEALDSFVGNLAPGDPHHNLWNVTKRIKRPLKRIPPIRRQDNSWCRTETE
FT                 RANAFAEHLEEVFTPANRCSPNEAAETARLLSEPLFDSESIPQATEEEISN
FT                 LIAAMGNHKAPGDDAINAIALKLLPPISKSLITTIINKCLQLGHFPSSWKR
FT                 AEVVMILKPGKHEANPASYRPISLLPVLSKILERVFLTRVLPVIEEAGLIP
FT                 DHQFGFRRRHGTPEQGHRVAQYILDAFENKKYCLAVMLDIKQAFDRVWHPG
FT                 LLLKLKNGLPQPYFKFLKSFLEGRRFAVRCGEARSDVKEARAGVPQGSVLG
FT                 PLLYNAYTADLPVIPSQYIMAATYADDTAFLTTADTPAEASQTMQEQLDLL
FT                 NTWHTRWNISVNSDKSTATTFATRRGTCPPVSFNGFPIPEVANPNYLGFTL
FT                 DRRLTWRPHLLKKRKQAENRVREFYWLMGRQSKLPTSTKLLIYKAIIRPIW
FT                 TYGIQLWGTASKSNINIIQTFENKTLRTVTNAHPFHDNATIHEVLSFPWVK
FT                 DEIKKSSRQYMQRLQDHPNNLAQDLLDTSQRTRRLHRSHPLDLSGIRHAN"
XX
SQ   Sequence 4396 BP; 1295 A; 1238 C; 969 G; 894 T; 0 other;
     tttttttttt ttttttacga agttaatttt gtgttcacca tagcatatcg tcgcgatcga        60
     acactcaacg agtgcagacg tgcctgcggg ccgcgagtta tctgtgttgt tcacatagag       120
     cccgcatttt agcaatttaa cacagcagca cccacgtgca gtggttggta caccgaccag       180
     ctgtacccag acaccgtccc cccccctccc ccccccacga tccatccccc ctcatcatgg       240
     attggcaggc caccccctgc gcccacaagc cagggaaatc aaccccctgc aagaaggccc       300
     gcagagtaag ggaatccagc ccaagcagcg actccagcac ctcgcattcg gagcctggca       360
     agcgcaaacc tgtgagcaaa cccacgccca acatcagcgc agcctatcgt cgaaggctgg       420
     caaacagatt tgccattctc tcgaacgaag aggacggcaa tgacgacgac gaacaaggca       480
     tccaagacgg agaacctgga cctgctgcca ccaaaacccc gggcaaaccc aagactactc       540
     tcaggacttt caagccacca ccaatcttca taccggatgt gaccaatatc aaggctttca       600
     ctaatagcat tgctggagta cttggcaatg atgtggagtt cacactgaaa atggcaagca       660
     acaacaacgt tcgcgtgatg accccggaca aggaaagctt ctccgccctg aaggacttct       720
     tggccaagtc caataaaagg tttcaaacct tccagccccg agacgaacgt gcctatagag       780
     tagtcatcaa aggtcttcac tactcaacgg acccagagga aattcgggat gggctaaacc       840
     gtcacggaca caaggtcaga gacctctaca accccaccca aagaagtacc aaaaagccac       900
     ttaacatatt tttcgccaat ctcgagccgg ccaagaacaa caaggaggcc tataaagtta       960
     cgcgactttg cagatcagtg gtgacaatcg agccaccgat aaagtttaat gacgtgccgc      1020
     aatgctatcg ctgtcaggca tttggacata cccaacggta ctgccaccta gaacacaggt      1080
     gtgtcaagtg cggagacagc cacccaaccg ttgagtgtaa aaataataat aagccggccc      1140
     attgcttgca ctgcgaagga ccgcatgcag cctcatataa aggttgtccc gcatataaga      1200
     aggccaaaag catgctcgct ccaaagctgg cttcagcccc acgcgcccat tacactgtga      1260
     gcagcagcaa ggttactcct aacgttagtt ttgccaacgc tgtcaaacag gcaactgatg      1320
     agacacatgc catccctcat actcaggcca attttgacaa cctgatggaa acaataatgg      1380
     gcagaatgga agccatgttt gaaaaaatga tggagaaggc gatgagtcaa acgaatcaga      1440
     tgatggagaa ggtaatgagt caaatgaatc agatgatggc aaccgtctgt aagtccctat      1500
     gcaatcagca ctagacataa ccatctggaa cgcaaacggc ctgatcaaca acaggccaga      1560
     ggtcgagctt tattgcaaga ccaaccaagc agatattctt ctcatatccg aaacccattt      1620
     ttcagacagg tcctacttca ccttaagggg gtatgacctc gtgtcagcca tccaccctaa      1680
     tggttcagca cgcggcggcg ccgccatcct tattcgcagc agcatcaaat tcgacaccca      1740
     accaccaatt caagaggatt gggtgcaatg cgcccgaata tcggtaagca ccacccacgg      1800
     agacattacc ttagctgctg cctactgccc acccagattt agagccacgg acgattgctt      1860
     ctcttcgctt ttggacagcc tcggccccaa attcgtcata ggaggtgact ttaacgccaa      1920
     gcacacttgg tggggttcca gagtatgcaa tccaaaagga cgcgcgctat gcaggcaggt      1980
     tctctcccgc aacctcaatt gccacggaac tgggacgcca acatactggc ccactgaccc      2040
     tgcaaaaact ccagacatct tggactttgc gatctctggc ggcctggacc cggcaagaat      2100
     ccagaccagg gaggtggaag accttctctc ggaccatagt gccattgccg tttcggtcta      2160
     cgcctcagcc atgttgagat ccgcgggtaa aaagttaatc ttcaaaacgt ccgacatcag      2220
     caaataccac cactggctga acaactcgac agtcactaat ccaccattgg atacccctga      2280
     acttatagat gcggccgttg tgaacctcac ctcgcaaatt caggaggcag caacttatgc      2340
     tgctccaagg ttctctaacc aaacgaggga cagaagtaga gacgtccact tttggaatcc      2400
     tcgggttaat gagctcaagt cagagaaaag gcgtctccga cgggtttggt tcctctccag      2460
     gaaccctaga gacaaaacag ctctcaacag agccaccaag gagctgaagg aaactctggt      2520
     caggctaagg aaggaggccc tcgacagctt tgttggtaat ctcgcgccgg gtgatcccca      2580
     ccacaacctg tggaatgtta ccaagcgcat caagaggcca ctgaagagga tcccgcccat      2640
     cagaagacaa gacaactcat ggtgcagaac tgagaccgaa agagccaacg cattcgccga      2700
     gcacttggag gaagtcttca caccagccaa tcgatgttcc ccaaatgaag cagccgaaac      2760
     agccaggctc ctgtcagaac ctctctttga ctccgagtcg ataccccagg ccacggaaga      2820
     ggaaatcagc aatttaatag cggcaatggg taaccacaag gctccaggcg atgatgccat      2880
     caatgccatt gctttaaagc tcctcccccc tattagcaag tcactaatca cgaccataat      2940
     aaataagtgc ttgcaattgg ggcacttccc ttcatcatgg aaacgcgccg aagtagttat      3000
     gatcctgaag cctggtaaac acgaagccaa tcccgcctcc taccgcccga tcagcctact      3060
     accagtactc tccaagatac tcgaaagagt atttttgacc agagtattgc cggtgattga      3120
     ggaggctggt ctgatccctg atcaccagtt tggctttagg cgccgccacg ggacaccaga      3180
     gcaaggccac cgagtagcgc aatatatcct ggacgccttt gagaataaga aatactgcct      3240
     agcagtaatg ctggacatta agcaagcctt tgatcgtgtt tggcaccccg gtctcctcct      3300
     aaagctcaaa aacggcctgc cccagccata tttcaagttc ttaaaatcgt tcctggaggg      3360
     cagaagattc gccgtcaggt gtggagaagc gcgctcagac gtcaaagaag cccgtgcagg      3420
     agttccccaa ggaagcgttc tcggtccgct cctctacaac gcgtatacgg ctgacctgcc      3480
     ggtgataccg agccagtaca ttatggcagc cacttacgcc gatgatactg cgttcctaac      3540
     aacagcagat accccagcag aggcctccca gactatgcag gagcaactag atctactgaa      3600
     cacgtggcac acgagatgga atatatcggt aaacagcgac aagtcaaccg ctaccacctt      3660
     cgcaactaga cgcggcactt gcccaccagt cagtttcaac gggttcccaa tcccagaggt      3720
     agccaatcca aattatcttg gctttacact ggacaggaga cttacatgga gaccacacct      3780
     gctaaagaag cggaaacagg cggagaacag agtccgtgaa ttctactggc tgatgggcag      3840
     acaatctaag ctaccgactt ccactaagct ccttatctac aaagcgatca taaggccaat      3900
     ctggacgtat ggcattcaac tgtggggcac tgcatcgaaa agtaacatca acataatcca      3960
     gacattcgaa aacaaaacgc tccgcacagt cacaaacgct caccctttcc acgataatgc      4020
     cactatacac gaggtcctca gcttcccctg ggtgaaggat gagattaaga aaagcagcag      4080
     gcagtacatg cagaggcttc aagaccaccc aaacaacctg gcacaagacc tgctggacac      4140
     cagtcaacgc accaggaggc tgcaccgatc acaccctttg gacctctctg ggattagaca      4200
     cgcaaattaa attaaattat atacatacat tattatatac atcatacata caatatcgac      4260
     agttattgta tagtttcgca acaatttatg taatcaatta attctctacc gttaagttta      4320
     gtcatcaaat ttaatgattg tccgcgaagg acagttttaa attaatatat ccaaaaaaaa      4380
     aaaaaaaaaa aaaaaa                                                      4396
//
ID   Jockey-1_DSuz repbase;    DNA;    INV; 5066 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5066
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 615-615 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           478..2190
FT                 /product="Jockey-1_DSuz_1p"
FT                 /translation="MAGLSDSEDELSIRKTVALQQKKMSDALNCSLTKFSR
FT                 LYNATSHINPPVPTNEVDPELAAINAEDEDWWTPSSVNSKRRLDSRSPNSV
FT                 TKIIRNSNSPKKNVSANRFSELSNMDIDVEASQTVSPYDTEKASTSTSNNN
FT                 VVNTNVGNNPASNNKIHSQPSGSQVQLPSHKPPPIVVDHCENLNGLIRSTD
FT                 KIVDPSKYSLKCHPNNSVSILAADPDAYRAITKSLTLKKVPFHSWQLKEER
FT                 SYRVVIRGVHHSIPDENIKESLTLTGHKVRFVNRPRSRFDKTKFVNLVFVE
FT                 LEPAANNKEIHEIKTLCRQRVQVELPYKKDDVVQCHRCQAFGHTKNHCQKL
FT                 SNCVRCGLQHGLEACVKDVHPVKCVNCGGNHTASYKGCVVYQQVAYRRKSI
FT                 ASHRSTVPQQSNNSNVRSNFVGQNSYANAVRGQVSRPQHQQAPMTFPQSQQ
FT                 FPPLGSNNRKQSQLHHQVVPPRQQQQLSQQQQRPQQQQQQPSHQQQSSPQQ
FT                 PRRSSQQMINDQQWQRQEQMFLQSNQNLSVLVAQMDKLFQMMVSMMGLVSK
FT                 LLPLNSPATAQAFAELLPVNVAQP"
FT   CDS           2190..4904
FT                 /product="Jockey-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLANKALELELFVKCHNIDIMLV
FT                 SETHFCSRSYYKLHGYDIHQATHPGDRKRGGSAILIKSCLQCYQFYSLQSP
FT                 NVQCVAVKVKTDLGETAIASIYCPPNFQCTADDFEKLFDDLGTNFIIAGDW
FT                 NAHHRLWGSRNSSTRGRALADYIQRSNVQVLATGGPTHYPYSQRTPTAIDF
FT                 AVYRGIRPESLSISESLELSSDHIPLIVKLRVAAQKTSRRPCILPRNASLP
FT                 RFQEAVNRLVNLNMVLRSPDAINDAVELFVRNIHIAAESSTSSSSPSSPPQ
FT                 APLKPEIMDLVRLKRSLRRRYMRSQDPVDKSAYRRAEDDLKKLLYETKRKY
FT                 FDEMLLNADPTKPYGFNLWKCTRNMKRQPLRKIPIKKSDDTWCRSDSEISL
FT                 AFADELERRFQPFELASREDVEETLAFLDAPSPDALPIQHVSPEEVYLHIQ
FT                 KLHPRKAPGFDGIDSRIAKALPKKGILFLVLLFNSMLRIHHFPSQWKCAVI
FT                 TMIPKPGKPENLVQSYRPISLLPTFSKIFERIFLSRIMGVRSVQDAIPDHQ
FT                 FGFRHHHGTPEQAHRVVQHILDAFENKQYSSAIFLDVKEAFDRVWHDGLLY
FT                 KLKSLLPTSQFLLLKSYLLDRSFMVEVRGERSTIRIVRAGVPQGSVLGPVL
FT                 YTLFTSDLPCPNKPGTILATYADDTAFIANASCPIEASRITQEFLDSYGKW
FT                 TNRWNISINGKKSQHCNFTLRGKILPRVELLDITIPQSPHAQYLGLILDKR
FT                 LTWKQHTTKVAASCRAKLRKLNWLLKPTSKLSLGNKVLLFKAIVVPSMTYC
FT                 IQLWGMASDSNVMKVQRVQNRALRMIADAPWYIRNDALTNDLHVPSVREQI
FT                 NRHSSRYNDRLTAHENHLAASLAHPRTRRRLKRRHPGDLWTRGRQVSRVLK
FT                 Q"
XX
SQ   Sequence 5066 BP; 1492 A; 1301 C; 1047 G; 1225 T; 1 other;
     agtctcgatc atgctttcgt ggagtgcaga cgcgtttttg catcgctgcg aaattccctg        60
     tgaagagtct atggacaagt ccacctccgt ggcaaaacct acttcttttg tgaatccgac       120
     ttctaaagtc gcggtgtcag tgcttctatg ctccgttagt tgtgccttgt cgcgaaaaca       180
     aaacaagtgg aacagaaact aaaaactaac agttgtattt gttgtacgta caaatcaccg       240
     ctagttggtt caaattcgaa ttcgaaatat atttgaatta gttattattt ttttccaaat       300
     aaaagaaaaa taattttgaa tctgctcgcc tctcggtggg ttcgagccgg gtaccgcccg       360
     attgcgggac ttgcacccta cccactaggc cacgatcgcc tcaaagcagg ctggtcaaag       420
     gccttctgta taccataagt cgataaagca gtgcacacca gtgcctaata gcaaaaaatg       480
     gctggtcttt cagactccga agatgagcta agcatccgaa aaactgtggc cttacaacag       540
     aagaaaatga gtgatgcact taattgctca ttaaccaaat ttagtcgcct atataatgcc       600
     acgtctcaca tcaacccacc tgtaccaacc aatgaagttg atccggaact agcagccata       660
     aatgccgagg atgaggactg gtggactcca agttcggtaa acagcaaacg ccgtcttgac       720
     tccagatcac cgaattcagt cactaaaata ataagaaact ccaatagccc aaaaaagaac       780
     gtctctgcta accgcttttc agaactgtcg aacatggaca tagacgtgga agcttctcaa       840
     acggtcagcc cctacgacac tgaaaaagcc agtacttcta ccagcaacaa caacgtagtc       900
     aacactaatg ttggcaacaa ccccgccagc aacaataaga ttcatagcca accgtctggc       960
     agtcaggtac aattaccctc ccacaaacca cccccaattg tggtcgatca ctgtgagaat      1020
     ctgaatggac ttattagatc cactgacaag attgttgacc cgtccaagta ctccctgaaa      1080
     tgccacccga acaactctgt ttctattctg gctgcagatc cagatgcata cagagcgata      1140
     accaagtctc taacccttaa aaaagtgcca ttccattcgt ggcagctaaa agaagagaga      1200
     tcctatcgag tagtcatccg tggtgttcat cattccatcc cggatgaaaa cattaaggaa      1260
     agtcttacct tgactggcca caaggttcga tttgtgaata gacccagaag ccgcttcgac      1320
     aagaccaagt tcgtgaatct agtctttgta gaattagaac cggctgcaaa taacaaagaa      1380
     attcacgaaa ttaagacact ttgtcggcaa cgggttcaag ttgaactccc ctataaaaag      1440
     gatgatgtcg tccaatgcca ccgctgtcaa gcatttggac acactaaaaa tcattgccaa      1500
     aagctatcca actgcgtcag atgtggccta caacacggtt tggaggcctg cgtaaaggat      1560
     gttcacccag ttaagtgcgt aaactgcggc ggaaaccata cagcaagcta taaaggctgt      1620
     gtcgtctatc agcaagttgc atatcgacga aaaagtatcg catcccatcg tagcactgtt      1680
     ccccaacagt caaataattc gaatgttcgg tcaaactttg tgggtcagaa ctcctacgca      1740
     aacgccgtcc gtggtcaagt tagtcgtccc cagcaccaac aagcccctat gactttccca      1800
     cagagtcaac agtttcctcc actgggcagc aacaatcgaa agcaaagtca gctacaccat      1860
     caagtagtac cacctcggca gcagcagcag ctatcacagc aacaacaaag gcctcaacaa      1920
     cagcaacaac agccaagtca ccagcagcag tcttcccccc aacaaccgcg acgcagctcg      1980
     cagcagatga tcaacgacca gcaatggcag cgccaggagc aaatgttttt gcaatctaac      2040
     caaaatctgt cggtcctcgt cgctcagatg gacaagctgt tccaaatgat ggtgtctatg      2100
     atgggacttg tctcaaaact tttgcctctg aattctcctg caactgctca agcattcgct      2160
     gagcttctcc cagtcaatgt tgcacaacca tgagtcaaat cggcctcaac attggtgtgt      2220
     ggaacgctga cggacttgcc aacaaagccc ttgagcttga gctctttgta aaatgtcata      2280
     atattgacat tatgttggtt agtgaaacac acttctgctc gaggtcgtac tacaagttgc      2340
     acggatacga tatacatcaa gcaacccatc cgggtgatcg gaaacgcggt ggctctgcaa      2400
     ttttaattaa atcctgcctt caatgttacc agttttatag tctacaaagc ccaaatgttc      2460
     aatgtgtcgc cgtcaaagtt aaaacagacc ttggtgaaac agctattgcg tctatctatt      2520
     gtccaccaaa ttttcaatgt actgctgacg actttgaaaa actcttcgac gatctgggaa      2580
     caaatttcat aatcgcaggc gactggaacg ctcaccaccg tctctgggga tcccgtaact      2640
     caagcacccg cgggagagca ctagctgact atattcaaag atcaaatgtc caggtccttg      2700
     caaccggagg gcctacacac tatccgtata gtcaaagaac gccaaccgcc attgactttg      2760
     ctgtctacag agggattcgg cccgagagtc tctccatctc agaaagtctt gaactaagct      2820
     ctgatcacat cccattgata gtgaaactaa gagtcgctgc gcaaaaaact tcccgamggc      2880
     cttgcatcct tcctcggaat gcgagcctcc cacgctttca agaagcagtc aaccggctag      2940
     ttaacctaaa tatggtgtta cgctctcctg acgccatcaa cgacgccgtc gagctatttg      3000
     tccggaacat ccatatcgct gccgagtcct caacctcaag ctcaagcccc tccagtccac      3060
     ctcaggctcc tttaaaacct gagattatgg atctggtaag gctgaaacgc tccctacgtc      3120
     gcagatatat gagatctcaa gatcctgtcg acaaaagtgc atatcgacga gcggaggatg      3180
     atcttaaaaa gcttctttat gaaaccaaac ggaaatactt tgatgagatg ctcctgaatg      3240
     ctgaccccac caaaccttac ggctttaacc tctggaaatg cacacggaat atgaaacgac      3300
     agcccctacg aaagatcccc ataaagaaat ctgatgacac atggtgcagg tccgactcag      3360
     aaatttcttt agcttttgca gacgaacttg aaagacgctt ccagccattt gaactcgcga      3420
     gccgcgagga tgttgaagaa actcttgcct tccttgatgc cccttccccg gatgccttgc      3480
     cgattcaaca cgtgagccca gaagaagtgt atctccatat ccaaaagctt catcctagaa      3540
     aagcgccggg ctttgatggc attgatagca gaatcgccaa ggccttgcct aaaaagggaa      3600
     tcctgttcct tgttctcttg tttaactcaa tgctacgtat ccaccacttt ccctctcaat      3660
     ggaagtgtgc tgtgataacg atgataccaa aaccaggaaa accggagaac cttgttcagt      3720
     cttaccgacc gataagcttg ctacccacat tctctaaaat attcgaaaga atatttctta      3780
     gcagaatcat gggagtaaga agcgtgcagg atgccattcc cgaccatcag tttggtttta      3840
     ggcatcatca tggaacccca gagcaagcgc atcgagttgt ccagcacatt ttagatgctt      3900
     ttgaaaacaa gcaatacagc tctgcaattt ttctcgatgt taaggaagct ttcgaccgcg      3960
     tgtggcacga tggcttactg tataagttga agtccctact cccgactagc cagttcctct      4020
     tactaaaatc atacctgctt gaccgaagtt tcatggtcga ggtgagaggg gaaaggtcaa      4080
     caatcagaat tgttcgagct ggcgttcctc agggaagcgt tctgggccct gttttgtaca      4140
     ctctgttcac ttcagatctg ccgtgtccta acaagccggg cacgattctg gctacatacg      4200
     ctgacgacac ggcctttatt gcgaacgcct cttgcccaat cgaagcgtca aggattaccc      4260
     aggaattcct cgactcttac gggaagtgga caaataggtg gaacatatcc ataaatggaa      4320
     aaaagtcgca acactgcaat ttcaccttga gaggaaagat ccttcccaga gtagagcttc      4380
     tggatatcac cataccacaa tcaccccatg cgcaatattt gggtttgatc ctggacaagc      4440
     ggctcacctg gaagcagcac actaccaaag tagcagcttc atgtagagct aagctgagaa      4500
     aactgaactg gttgcttaag ccaacgagca agctcagcct tggcaacaaa gtcttgctgt      4560
     tcaaagcaat tgtggtgccc tcaatgacgt attgcatcca actgtggggc atggcttcag      4620
     actcgaacgt catgaaagtc caaagggtcc aaaaccgtgc gctgcgcatg attgcagacg      4680
     cgccgtggta catcaggaat gacgccctaa caaatgacct tcatgttccc tcagtcaggg      4740
     agcagataaa ccggcactct agtcggtaca atgatcggct cactgcacac gaaaaccacc      4800
     tagcagcttc cttggcccac ccaaggacta gaagaagatt aaagcgaagg caccccggtg      4860
     atctctggac aagaggacgt caggtctctc gagtcctaaa gcaataaaat tgtttttgtt      4920
     catttattgt aaatattgtt aatcaccttt tctgttatgt atccacgtta attatttctc      4980
     ttcgtacaca acgttttata gccattaggt tggctgatca acgttaaata aatgaaattt      5040
     gttatactaa aaaaaaaaaa aaaaaa                                           5066
//
ID   Jockey-1_DT repbase;    DNA;    INV; 5123 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5123
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1703-1703 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.  5' end uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           508..2238
FT                 /product="Jockey-1_DT_1p"
FT                 /translation="MAGLSDSEDELSIRNTVSRQQQIMKEALNSSLSKFRR
FT                 XYASTSVKTAPPPNNNVDPELAAINGEDEDWWTPRPVNTKRRLESGSPNSV
FT                 TKILRNSGSPKANVSANRFSELSDMETDERVEDSSTVSPNYSXQPSTSTST
FT                 PGQASSNNSNPINNNAGNSIANNITNPSQPSENQAQLPSHKPPPIVVAHCE
FT                 NLNGLIKSTDKIVDPSKYSLKCHPNNSVSILAADSDAYRAITKSLTLKNVP
FT                 FHSWQLKEXRSYRVVIRGIHHSVPDDNIRESLSLSGHTVRYINRPRSRFDK
FT                 TRLANLVFIELEPAANNKEIHEIKTLCRQRVQVEIPYKKEDVVQCHRCQAF
FT                 DHTKNNCHMGFNCVRCGLQHGLKDCLRDVHPVKCVNCGGDHTASYKGCAAY
FT                 QKAASRRKSVTSYPQQSARSNGQSNFVASTSYANAVRGQVNRPQHQQLPIP
FT                 SQQNQQFPPLGSNNRKQSQPRHLKAPRQQQHQQPSQQQQNHRQQQQPVHQQ
FT                 ESFPQQQRRSPQQSFNDQQWQRHEQMFLQSNERMSVLVAQIDKLFQMMMSM
FT                 MELVSKLLPQNTPGTAQAFASFLPVNATLP"
FT   CDS           2238..4958
FT                 /product="Jockey-1_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLANKALELDLFVQSHNIDIMLV
FT                 SETHFCSRSYYKLHGYVIHQATHPAVRKXGGSAILIKSCLQSYQCYSLQSP
FT                 NAQCAAVKVKADLGETTIASIYCPPNFQCSADDFEKLFDDLGPNFIIAGDW
FT                 NAHHRLWGSRNSTTRGRALAEFVRRSNVQVLATGGPXHYPYSQRTPTAIDF
FT                 AVYKGIRPESLTISESLELSSDHIPLIIKFGVAAQKXCHRPRILPRNANIP
FT                 RFQAVINRLVNLNMVLSSPDDINDAVEMFARNIHIAAESSTNGQVSNPSNR
FT                 PQALLKPEVMDLVRLKRSLRRRYMRSQDQVDKRAYRRAEDELKKLLHETKR
FT                 EYFDDMLLNADTTKPYGFNLWKLTRNIKRQPLRKIPIRKADDTWCKSDPEI
FT                 SLAFADELEKRFQPFDLARPEDVEETLAFLNAPSPEALPIQHVSPEEICSH
FT                 IQKLHPSKAPGFDGXDSRIAKALPKKGILFLVLLFNSMLRIHHFPSQWKCA
FT                 VITMIPKPGKPENLVESYRPISLLPTFSKIFERIILSRILGVRSVQDAIPD
FT                 HQFGFRNHHGTPEQAHRLVQHILNAFENKQYSSAIFLDVKEAFDRVWHEGL
FT                 LHKLKTLLPTGLFLVLKSYLLDRSFMVEVRGERSSLRFSRAGVPQGSVLGP
FT                 VLYTLFTSDLPSINAPDTLLATYADDTAFLVNSTCRIEASRITQEFLDSYG
FT                 KWTNRWNIAINGRKSQHCNFTLRGQILPTVELHSTTIPQSPQAQYLGLILD
FT                 KRLTWKQHTTKIAATCRAKLRKLNWMLKSTSKLSLANKVLLFKTIVVPSMT
FT                 YCIQLWGVASDSNVMKVQRVQNKALRTITNAPWYVRNVDLANDLHMPSVRD
FT                 QINRHSSRYNDRLTGHPNHLAASLANPLNRRRLKRRHPGDLWTRGRHVSRV
FT                 LKQ"
XX
SQ   Sequence 5123 BP; 1487 A; 1369 C; 1045 G; 1214 T; 8 other;
     ttaaagaaat gcctcaaatc cttatcctta tccttatctc gatcatgccc tcgtatagtg        60
     cagacgcgtt tttgcatcgc tgcgaagttc tttgtgaaga ttctatggac aagtccacct       120
     gcgtggcaaa agttattgtt tttgtgaawc cggcttctat agtcgcggtg ctccaacgct       180
     ccgttagttg tgcttatcgc gaaaacaagt ggaacagaag gtcaaaactt acagttgcaa       240
     ttgttgttct tgcaaatcac aactagttgg ttcagattcg aaatcggttt cgaagtgagc       300
     tacaaatcaa tattttcgtc ccaaataaaa gaaaaaataa acttgatatt tgtttgcctc       360
     tcggtgggct cgaacccggt cccgcctgat tgcggggcct gcaccttgcc ctctaggcta       420
     cgatcgcctt ttctgaattc gggcaaagcg cccctgtatg caaattgtcg gtaaagcagt       480
     gcacaatatc agtgcataat aacaataatg gctggtcttt cggattccga agatgagcta       540
     agcatcagaa ataccgtgtc tcgtcaacag cagataatga aagaggcact taatagctcc       600
     ttatccaaat tcaggcggnt atatgcttca acctctgtca agaccgcgcc accaccaaac       660
     aataatgttg atcctgaact agcagctatt aatggcgaag atgaggactg gtggacccca       720
     cgcccagtaa acaccaaacg tcgccttgag tccggatcac cgaattctgt caccaaaatc       780
     ctgaggaact cagggagtcc aaaagcgaat gtttctgcca accgcttctc agaactttca       840
     gacatggaga cagacgagcg tgtcgaagat tcttcaacgg tcagccccaa ttactctgnt       900
     caaccgagta cctctaccag taccccagga caggccagca gcaacaacag caacccaatc       960
     aacaacaacg ctggaaacag tatcgctaac aacatcacga atcccagcca accgtctgaa      1020
     aaccaagccc aattaccctc ccacaaacca cccccaatag tggttgccca ctgcgagaat      1080
     ttaaacggac ttatcaaatc cacagacaaa atagttgacc cgtccaaata ttccctgaag      1140
     tgccacccca acaactctgt ttccatcctg gctgcagatt cagatgctta cagagcaata      1200
     acaaaatctt tgacccttaa aaatgtacct tttcattcat ggcagctaaa agaggngaga      1260
     tcctatcgtg ttgtcatccg tggtatccat cactccgtac cagatgataa tattagggaa      1320
     agtctttccc tgtctggcca cacagttcga tatattaata gacctagaag ccgctttgac      1380
     aaaaccaggc tcgcaaactt agtttttatt gaactagaac cggcagcaaa caacaaggaa      1440
     atccatgaaa tcaagacact ttgtcgacaa agggtacaag ttgaaatccc ctacaaaaag      1500
     gaggatgtcg ttcaatgcca ccggtgccaa gccttcgatc acactaaaaa caactgccat      1560
     atgggtttca actgcgtcag atgcggtctg caacacggtt tgaaggactg cctaagggat      1620
     gttcatccag tcaaatgcgt taactgtggc ggcgaccaca cagccagcta taaaggctgt      1680
     gctgcttatc agaaggcagc tagtcgacga aaaagtgtga catcttatcc tcaacagtca      1740
     gctagatcaa atggtcaatc caactttgtg gcttcaacct cctacgcaaa cgcagtccgt      1800
     ggccaagtta atcgtccgca acaccaacaa cttccaattc catcccagca aaatcagcag      1860
     ttccccccgc tgggcagcaa caacaggaag caaagccagc cacgccatct taaagcacct      1920
     cgacagcagc aacaccagca gccttcacag caacaacaaa accatcgaca acaacaacag      1980
     ccagttcacc aacaggagtc tttccctcaa caacagcgac gcagcccaca gcaatcgttt      2040
     aacgatcagc aatggcagcg gcatgagcaa atgtttttgc aatccaacga aagaatgtcg      2100
     gtccttgttg ctcagataga caagcttttc caaatgatga tgtcgatgat ggagcttgtc      2160
     tcaaaactat taccccaaaa tactccagga actgctcaag catttgccag tttcctccca      2220
     gttaacgcaa cgctaccatg agtcaaatcg gcctcaacat tggtgtgtgg aacgccgacg      2280
     gacttgccaa caaagccctt gagttggatc tctttgtgca aagtcataat attgacatta      2340
     tgctagtcag tgaaacacac ttttgttcaa ggtcgtacta caagttgcac gggtacgtca      2400
     tccatcaagc aactcatcct gcagttcgga aanggggtgg ctctgcaatc ctaataaaat      2460
     cctgtcttca aagttaccag tgttacagtc tacaaagtcc aaatgctcaa tgtgccgcag      2520
     tcaaggtcaa agccgacctt ggcgaaacaa ctattgcgtc tatctattgt cctccaaact      2580
     ttcaatgttc tgccgacgac ttcgaaaaac tcttcgacga tctggggcca aatttcatca      2640
     ttgcagggga ctggaatgct caccaccgtc tctgggggtc tcgaaactca accacccgcg      2700
     gtagagcgct agcggaattc gttcgaagat ccaatgtcca ggtccttgct accggcgggc      2760
     ctangcatta tccttacagc caaagaacac caaccgccat tgactttgct gtctacaaag      2820
     ggatacggcc cgagagcctc actatctcgg aaagtcttga acttagctct gatcacatcc      2880
     cactgataat taaattcgga gtcgctgcgc aaaaaatntg ccataggcct cgcatccttc      2940
     ctcgaaatgc gaacattcca cgcttccaag cagtaataaa ccggctagtt aatcttaata      3000
     tggtgttaag ctctcctgac gacataaacg acgctgtcga gatgtttgcc cggaacatcc      3060
     atatcgctgc cgagtcctca accaatggtc aagtctcaaa cccctccaac cgacctcagg      3120
     ctcttttaaa acctgaggtt atggacctgg taaggctgaa aagatcccta cgtcgcagat      3180
     atatgagatc ccaagatcaa gtcgacaaaa gagcctatcg ccgtgctgag gacgaactca      3240
     aaaagcttct gcatgaaaca aagcgcgaat atttcgatga tatgctcctc aacgcggaca      3300
     ccaccaaacc gtacggcttc aacctttgga aattaacgcg gaatataaaa cgacagcctc      3360
     tccgaaagat ccccattagg aaagctgacg atacatggtg caagtccgac cccgaaatat      3420
     ccttagcttt cgcggacgaa ctcgagaaac gttttcagcc gttcgacctg gcgagacccg      3480
     aggacgttga agaaacactg gcctttctta atgctccttc cccggaagca ttaccgatcc      3540
     aacacgtgag tccagaagaa atctgtagtc acatacaaaa gcttcatccc agtaaagcgc      3600
     cgggtttcga cggcatngac agccgaattg ccaaggctct gcctaaaaag ggaatcctgt      3660
     tccttgttct cctcttcaac tcaatgctac gtatccacca cttcccctct caatggaagt      3720
     gtgctgtgat aacgatgata ccaaagccag gaaaaccgga gaatcttgtc gagtcatatc      3780
     gaccgataag cttgctaccc actttctcta aaatattcga gagaataatt ctaagtagaa      3840
     tcttgggagt aagaagcgtg caggatgcca ttcccgacca tcagtttggt tttaggaatc      3900
     atcatgggac cccagagcaa gcacatcgac tagtccagca catcttaaat gcttttgaga      3960
     ataagcaata cagctctgct attttcctcg acgtcaagga agcatttgac cgcgtatggc      4020
     acgaaggact actccataag ttgaagaccc tactcccgac aggcctattc cttgttctca      4080
     aatcctactt gctcgatcga agcttcatgg tcgaggtaag aggggaaagg tcaagcttaa      4140
     gattttctcg tgctggcgtt cctcagggaa gcgtcctggg ccccgtttta tacaccctgt      4200
     tcacctctga tctgccgtct atcaatgcac cggacactct tctcgccacc tacgctgacg      4260
     acactgcctt ccttgtaaat tccacctgcc gtattgaagc atcaagaata acccaggaat      4320
     ttcttgactc ctacggcaag tggacaaaca ggtggaatat tgcaattaat ggcagaaagt      4380
     ctcaacactg caacttcact ctgagaggac agatccttcc aacggtcgag ctccatagca      4440
     ccaccatccc gcaatctccc caggcgcagt acctgggtct gatcttggac aaacggctca      4500
     cctggaaaca gcacactaca aaaattgcag ctacatgtcg cgctaagcta aggaagctaa      4560
     actggatgct gaaatcaacg agcaagctca gccttgccaa caaagtgttg ctattcaaaa      4620
     caattgtggt gccctcaatg acgtactgca tccaactttg gggcgtggct tccgactcta      4680
     acgtcatgaa ggtccaaaga gttcaaaata aagcgctgcg aacaattacg aatgcgccgt      4740
     ggtacgtcag aaacgtcgac ctggctaacg atctccacat gccctctgtc agggaccaga      4800
     taaaccggca ctccagtcgg tataacgacc gcctcacagg acaccccaac cacctagcag      4860
     cttccttggc caacccgttg aacaggagac ggctaaagcg aaggcacccc ggcgatctct      4920
     ggacaagagg acgtcacgtc tcacgtgtcc tgaagcagta atgcgttttt tgtattgttg      4980
     ttttagtttt ctattataag ttataagatt tgttactcgc catcctgtta tgtatctcaa      5040
     gttatttgtt cctatttgta ctatacgttt tatagccatt aagttggctg atcaacgtaa      5100
     aattatatga gttacattaa aaa                                              5123
//
ID   Jockey-1_DVi repbase;    DNA;    INV; 5106 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   12-SEP-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5106
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila virilis genome.";
RL   Repbase Reports 12(9), 1990-1990 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           580..2205
FT                 /product="Jockey-1_DVi_1p"
FT                 /translation="MASNKPNPLIPDYPASPIYNPSDNVLPPYITLCGGTT
FT                 LLTTSCITTTACSLGTTTVTSSLAHGISSQGPAIPSIPGANPATSPDLHAF
FT                 LNNYPPKTSRTWQGQWFKATKREGGNLSPHIVRKKASTTETKKASQNRFAA
FT                 LCDEEESDMDTEVELATNKEACADEDVDDRPSTSHAARARASRQQTANKKL
FT                 AAHPQPTQTAPPNERPASKVPRITVPNVLSFTKFCKELDSVLGADTYTVRS
FT                 LNSGDCIVQCRNSDEYRTLARHLRENGCLFHHHQLAEDRPYRIVLRNIHHE
FT                 VASEDISAQLAEKGHHVVRIYTPRSRVNNEPLNMRFVDLRKAENNNLVKSI
FT                 TVLCRHKVSWEKPRKTSGPVQCNRCQEYGHTKSYCSRHYVCKECGDNHPSN
FT                 ECTLGKDENRCCHHCGEAHAANFKGCKKYLQYAFQQKNQHKANGRDASRSR
FT                 DPRPKTAAPACSFVPGQQSFASVLRGTQPAERSARSSSRRRNTGSTPSQSQ
FT                 PVADNCPNSALELMMKQMFARFDQLMSLIQTLLQALMHTSAKNNSA"
FT   CDS           2210..4927
FT                 /product="Jockey-1_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSSLRIALWNANGVFSKANEITAFIELHHIDVFLLTE
FT                 THFCSRITLRVPGYTLHTANHPDNSQHGGAAILIRSSLSHHSLESSCHWHM
FT                 QAAAIRLGSSRGDFNLASVYCPPALRVTEAHFRALFDQLGPKFLAGGDWNA
FT                 KHRWWGNYRMCPRGRTLFSAIENEGIEVIATGEATCYPYRATATPSALDFG
FT                 LYKGFRQEQLRIRSLLDLTSDHLPLLIELEETPKWEVGIRKMLPPRSNLGV
FT                 YRACLEDTLELNVTINTASELESYVDHLTAKITEAARRAAPQTLPHSRTFR
FT                 RSLLSPEARSLLADKRRLRRLYIRNGDLSTKAEMVSASNRLRRLLARTRTE
FT                 NLDSFLETTGHDGNSTFSVWKLTRSIKRQPVFTSPITDHSGLWLRSDEEKA
FT                 NAFADYLETTFKPFDFADVAQRRKVAESLDAPLQMALPIRSISPAEIGTQL
FT                 KMLELKKTPGCDEIDNRAAKALPRKGVMALATIFNSMLRLGHFPKQWKHAK
FT                 IVMIAKPGKPLTQLESYRPISLLPTLSKVFERLLLSRLLELDEVTRLVPDH
FT                 QFGFRKSHGCPEQVHRAVKHVLEAFEQKQYCVGVFLDVKQAFDKVWHDGLL
FT                 FKIKLILPAPYFSILSSFLAGRTFNVAVKDQRSAIKGIRAGVPQGSVLGPM
FT                 LYTLYTADLPTQGQSNEDLSPARLLVATYADDTAFLASHKNLQAATSAVQD
FT                 WLLQIETWTAMWNIAINCAKSACVTFTLRPYSCQGLRFDGXTIEQTNSFCY
FT                 LGVHLDRRLIWGPHIAATRAKCLRRLQKLDWLLKPQSKLHISTKTLLIKTM
FT                 VTPIWTYAIQVWGTASAHQLRRIRVVQAKAARKVAGLPWYVTTDAIERDLR
FT                 LTKVGDQLNFFSSRYSDKLVQHPNAAARALAEPISERRLRRLHPDDLPTRH
FT                 IT"
XX
SQ   Sequence 5106 BP; 1429 A; 1489 C; 1170 G; 1014 T; 4 other;
     caattcgcct tgaacttccg cggagatcgg tcgtgttttc tgtgcattcc cgtgcgtgtg        60
     tatgttcagt gcatcccagg caaaaaacaa acmaaaagtg acagtgacac taactaagcc       120
     cgccccaggg cttaacaaac aaatcgcgcc tgcagagcgc gaaaaaaaaa caattgtgct       180
     gcctctggca gctaaactat atatatatat aaacatatat aaacatttaa attttttttt       240
     ttacacaaaa gtgcaaccgc gtgcgagcgt aagagagcaa gcttttgcta agctcaaact       300
     gcgctcagct gatcgcctta actcagctgt agtgtgtgtg wgtgcgtgtg agtgagcaga       360
     gctttcgcga gagagctttt gcctagactc actaacacaa gtaaagcact agccaatagg       420
     agaacaatca gtgctggcaa gtcagtcact gaccgtgaca gtgctgacac tttccagtca       480
     ccgttttcgc tccccgttca ccaaagtcac ttttcacaaa aatactggag atttttgtaa       540
     ataagtgcag ctagtaaatt ttggtcwaca tctcacctaa tggcgtccaa caagccgaat       600
     ccactcatcc ccgactatcc tgcgtcacct atatacaacc cgtcggataa tgtgctaccg       660
     ccatacatca cgctgtgcgg gggtactacg ctactcacca cgtcgtgcat caccacaact       720
     gcctgctccc taggaacgac tacggtaacg tcgtccctcg cacatggcat cagctcccaa       780
     ggccccgcaa tcccgtccat tcctggcgcg aatcctgcta caagcccgga tctccacgcg       840
     tttttgaata attacccgcc caagacttca cgtacttggc aaggtcaatg gtttaaggcc       900
     acaaaaagag aaggtggcaa tctctccccc catatcgtcc gtaagaaggc gagcaccacc       960
     gaaaccaaga aagccagcca aaaccggttt gcggccctct gtgacgaaga ggaaagcgac      1020
     atggacacgg aagtagagct agccaccaac aaggaagctt gcgccgacga ggatgtagat      1080
     gataggccat ccacctcgca cgcagctcgc gcaagggcca gcaggcaaca aacggcaaat      1140
     aaaaagcttg ccgcacaccc gcaacccacc cagacggcgc ctcccaatga gcggcctgcc      1200
     tctaaggtgc cgagaataac tgtgccaaac gtcctcagtt tcaccaagtt ctgcaaggaa      1260
     ctagacagcg tcctaggcgc ggacacttac accgtcagat cgcttaattc tggcgactgc      1320
     atcgtccaat gccgcaactc agacgaatac cgaacgctgg caaggcacct tcgcgagaac      1380
     ggctgcctgt ttcaccacca ccagcttgca gaagaccggc cgtaccgcat agttctacga      1440
     aatatccacc acgaggtcgc atccgaagat atttcagcgc aattggcaga aaaggggcac      1500
     cacgttgtcc gcatatatac cccgcgtagc agagtcaata acgaacctct aaatatgaga      1560
     tttgttgacc tgaggaaagc ggagaacaat aaccttgtca aatcaataac agtactatgc      1620
     aggcacaaag tttcgtggga gaagcctcgc aagacgtcgg gccctgtaca atgcaacaga      1680
     tgccaagagt acgggcacac aaaatcttac tgctcgagac actatgtgtg caaggagtgt      1740
     ggggacaacc atccaagcaa cgagtgcaca cttggcaagg acgagaatcg gtgttgtcac      1800
     cactgtggag aagcacacgc agcaaacttc aaaggctgca agaagtacct gcaatatgct      1860
     ttccagcaga aaaaccagca caaggcaaat ggcagagatg caagccgctc cagagatccc      1920
     cgccccaaaa cagccgctcc tgcctgcagc ttcgtgcccg gccaacaatc ctttgccagc      1980
     gtcctccgcg gtacccagcc cgcagagcgc agtgcccgct catcgtctcg cagaaggaac      2040
     actggcagta ctcccagcca atcgcaacct gttgccgaca actgccccaa ctcagccctt      2100
     gagctcatga tgaagcaaat gttcgccaga ttcgaccaac tgatgtctct catacagact      2160
     cttttacaag cgctaatgca cactagcgcc aaaaataaca gtgcctaaaa tgagctccct      2220
     caggatagca ctatggaacg ccaacggagt cttttcgaag gcgaatgaga tcacagcctt      2280
     catcgaactc caccacatcg atgtgtttct gctcacggag actcacttct gctctcgaat      2340
     caccctcaga gtgccaggct acactctcca caccgccaac cacccagaca acagccaaca      2400
     tggaggagca gcaatattga tcaggtcgtc cttgtcgcac cactcacttg agtcatcctg      2460
     ccactggcat atgcaagctg ctgctatccg actcggatcc agcagaggcg acttcaatct      2520
     cgcctctgta tactgccctc cggccttgag agtgactgag gcacactttc gagccctttt      2580
     cgaccagctt ggccccaaat tcctggcagg aggagactgg aacgccaaac atcgctggtg      2640
     gggaaactac cgcatgtgcc cccgagggag aacgctcttc tctgccattg agaatgaagg      2700
     catcgaagtc atagccactg gagaggcaac gtgctaccca tatagggcta ctgcaacacc      2760
     aagtgcactt gacttcgggc tctacaaggg attcagacag gaacagctgc gaatacgaag      2820
     cctccttgac ctgacgtcgg atcacctccc attactgatt gagctcgagg agactcccaa      2880
     gtgggaagtt ggaatccgca aaatgctccc gccgcgctct aacttgggag tataccgggc      2940
     ctgcctcgag gacacattag agctcaacgt caccataaat acggcaagtg aactggagag      3000
     ctacgttgac cacctcacag cgaaaattac ggaagctgct agacgtgcag ccccgcaaac      3060
     cctgcctcac tctcgtacct tcagaaggtc cctactaagc cctgaagcca ggagtctcct      3120
     tgccgacaaa agacgtctaa ggaggctgta catccgcaac ggagacctct ctaccaaggc      3180
     agaaatggta agcgcgtcca accggctcag acgactgctg gctaggactc gaacggaaaa      3240
     tctagacagc ttcctcgaaa caactgggca tgacggcaac agcacctttt cagtgtggaa      3300
     gctcaccaga agcattaaga ggcaaccagt ttttacctcc ccgatcacgg accactctgg      3360
     cctctggctc cgatcggacg aggaaaaggc caacgcgttt gctgactact tggagacaac      3420
     cttcaagcca ttcgacttcg cagacgttgc acagcgccgt aaagtagccg agtcactgga      3480
     cgctccactg cagatggctc tcccgataag aagcatctcc cccgcggaaa tcgggacaca      3540
     gctgaaaatg cttgagctaa agaagacccc aggatgcgac gaaatcgaca acagagcagc      3600
     taaggctctc ccacgcaaag gagtcatggc gctcgccaca attttcaact ccatgctccg      3660
     ccttggccac tttccgaagc aatggaaaca tgcgaaaatt gtgatgatcg ccaaacccgg      3720
     taagccgcta actcaacttg agtcctaccg ccctataagc cttctgccga cgctctcaaa      3780
     agtctttgag cgacttctgc taagccgtct cttagaactc gacgaggtca cgcgcctggt      3840
     cccggatcat cagtttggct tcagaaagtc tcacggctgc cccgagcagg tccaccgggc      3900
     agtaaaacac gtactagaag cttttgagca gaagcaatac tgcgtcggcg ttttcctcga      3960
     tgtcaaacaa gcgtttgaca aggtctggca cgatggtctt ctgttcaaga tcaaactgat      4020
     actcccagcg ccatacttca gcatccttag ctcctttctg gcaggacgca cctttaatgt      4080
     ggccgttaaa gaccaaaggt cggcaattaa gggcatcaga gcaggtgtcc cacaaggcag      4140
     cgtcctcggt ccgatgctgt acacgctgta tacggcggac ctgcccacac aaggacaaag      4200
     caacgaagac ctcagccctg cgagactgct ggtggcaaca tatgcggacg acactgcctt      4260
     cctagcctcc cacaaaaatc tgcaagctgc tacaagtgca gtgcaggact ggctgctgca      4320
     gatcgaaacc tggacagcta tgtggaacat cgctataaac tgtgccaagt ccgcctgcgt      4380
     cacttttacg ctgcgcccat acagctgcca ggggctacgg ttcgatggas gaaccattga      4440
     gcagaccaac tctttctgct acttgggtgt ccacctggat cgaaggctca tatgggggcc      4500
     tcacatcgca gcaacgagag caaaatgcct gagaagactt caaaagctcg attggctact      4560
     aaagcctcaa agcaagctgc acatatccac gaagacactg cttatcaaaa cgatggtaac      4620
     gcctatctgg acatatgcga tccaagtttg gggcacggca tcagcacacc agctccgtcg      4680
     cataagagtg gtccaagcca aggcagcacg caaggttgct ggcctgccat ggtacgtaac      4740
     aacagacgcc atcgaacgcg atctccgcct aacaaaggtc ggagatcagc tcaacttctt      4800
     cagcagccga tactccgaca aattggtgca gcatccgaac gcggccgcaa gggccctggc      4860
     tgagcccatc agtgagaggc gcctccgaag gctacacccc gacgacctac caacgaggca      4920
     catcacttaa acatcccttt cccattattg ttatatattt ttaagtctgt aattatcatt      4980
     taagttatta aataataact atacactata cccttaactc cgcttggtag agatcagaag      5040
     gcactgatcg attccagcgc aaaataaacc aaattaaaaa aaaaaaaaaa aaaaaaaaaa      5100
     aaaaaa                                                                 5106
//
ID   Jockey-1_DWi repbase;    DNA;    INV; 4683 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4683
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1961-1961 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           216..1874
FT                 /product="Jockey-1_DWi_1p"
FT                 /translation="MSTNSGPSSLDPHQQQLQELIVQQQRERRLSVQRNNA
FT                 YFSVVSPTPPNANVSNNTESASHSAINSNLPWREQCASPSISITGSPIAPT
FT                 STVSSLTATSTVSSLTATTATSAEVLTCLKPSTTSRPESATIVNPTTSVQT
FT                 GMDRYIKITKRKLSPQKKKSGNTPKITKPNERVAPLSGNRFKILADQQDDQ
FT                 AGAVDKVKSARPPPLYIRGANCSALISKLVETVGANNFVVTPLNRGNIKEI
FT                 KCQAQTEDNFRIIEKYLRNANINFYTYQLKSSKGLQVVLKGIEPSVPTQEI
FT                 ADALVEKGFAVKSVVNIINRNKVAQPLFKIELQPDAKRSKPNEVHPIYNLQ
FT                 LLLHRRITVEEPHKRRQPPQCKNCQEYNHTSNNCNLRSVCVGCGEHHEDGI
FT                 CTKDRNNVALRLCSNCGGNHTANYRGCPVFKDLKSHLNGRKPPAGPKIIFN
FT                 ASKTTPEVFFAKAARSSNMTATTSPSVSFASVLRTGQTEPAKETPSLRHLQ
FT                 NPQPSAPELGQQTPSGLEALLISLNQNMTTFMTFMQNCMHELMRNQNLLIQ
FT                 KLIENK"
FT   CDS           1877..4534
FT                 /product="Jockey-1_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MASLRLCLWNANGISKHKNELQLFLDSSEIDVLLISE
FT                 THLTSKNNFQIPKYTFYATNHPDGKAHGGTGILIKNRIKHSFLNRFETQHL
FT                 QATAITVQTSCGNTTLVALYCPPRFSISEKEFTDFFNTLGDRFIAAGDYNA
FT                 KHTHWGSRLVNPKGKQLYNTIVNPLNKMDCVSPGRPTYWPTDPQKVPDLID
FT                 FAVTKRIPRNRITAETLLDLTSDHSPVLFTLLTRPQVLDRPYRLTNNKTNW
FT                 LKFKMYMSAHIDCSPKLDAAEDIDMCVSALESMMGAAARVSTPHASSYTKP
FT                 VDRPTNRRIEQLVTEKRRLRREWQITRSPAAKLRLRQAHRNLSKALRQEES
FT                 WAQRKYIEKLSPTSTKHPLWKAHPTLSAPTETISPIRSPTGGWARSDEERA
FT                 SVFATHLKMVFQPNPTSNSSVLPPSNTLTDSEYSELQSDEITAVIKNHIKP
FT                 KKAPGHDLITPKMILELPIIAIQYICKLFNAIIKIGYFPRTWKKSTIIMIP
FT                 KVGKDKTQPSSYRPISLLPCLSKLFEKVLQIRLNSFLASENTIPSHQFGFR
FT                 EKHGTIEQVNRITSEIRTAFELKEYCAAVFLDVAQAFDRVWLEGLMFKIRQ
FT                 KLPQYTHKLMESYLYNRKFAVRCNGSVSADFEIKAGVPQGSVLGPLLYLLY
FT                 TADLPTSLGLTTSTFADDTAILSRSKCPIQASAKLEEHLKVVEEWLATWRI
FT                 RVNEQKCKHVTFTLNRRNCPALMLNNVPVPQAVDVTYLGIHLDRRLTWRKH
FT                 IEAKKSQLKLKASSLHWIINARSPLRLEYKVLLYNSVLKPIWTYGAVLWGN
FT                 ASTSNVDIIQRAQSKILRSITGAPWYIRNDNIQNDLNIPSVKSEIGTQQLK
FT                 YSAKLDAHPNVLANSLTRTNNRTRLKRNDRPTQ"
XX
SQ   Sequence 4683 BP; 1547 A; 1204 C; 900 G; 1032 T; 0 other;
     ttccaattca actgccgccg tgtgcagacg tgttttttaa tgcactccgc aaaaattgag        60
     tgtaaaaaaa aaaaaaaagt ctgcgtttgc aaaaagttgt gtagggctct cagtcgcctc       120
     agagacgcct atttacaatc atattgctat tagattgctc taatagcaat aaatactaag       180
     ttgcaacaac aaagtgcgta atttttacaa aagccatgtc caccaattcg ggcccaagct       240
     ctctcgatcc ccaccagcaa cagctacaag aactaattgt acaacaacaa cgtgagcgtc       300
     gactctcggt ccaacgcaac aacgcgtact tttcggtggt gtcgccgacc ccaccgaatg       360
     ctaacgtaag caataacacc gaaagtgcca gccactcagc aattaacagc aacttaccgt       420
     ggagagagca gtgtgcttct ccatcaatat cgataactgg gtcaccgatt gcaccaacca       480
     gcaccgtcag ctcgttgaca gcaaccagca ccgtcagctc gttgacagca actactgcaa       540
     cgtctgccga agtattgacc tgcctcaagc cgtcaacgac aagtcgccca gagtcagcca       600
     caatagtaaa cccaacgact tctgtccaaa ctggaatgga cagatatatt aaaataacta       660
     agcggaagct aagcccgcaa aagaaaaaaa gtggcaatac gccgaaaata accaaaccaa       720
     atgaacgagt agcacccctt agcgggaatc gttttaaaat tcttgccgat cagcaagacg       780
     atcaagccgg cgctgtagat aaagttaaat cggctagacc acccccttta tacatccgtg       840
     gagccaactg cagcgccctg atttcgaagc tagtagaaac agtaggggca aataactttg       900
     ttgtaacccc tctcaatagg ggtaacatta aagaaattaa atgtcaagcc caaactgagg       960
     acaatttccg catcatcgaa aagtacctcc gtaatgctaa catcaacttc tatacctacc      1020
     aactaaaaag cagtaaaggg ctccaggttg tgttaaaggg gattgagcca tcggtcccta      1080
     ctcaagaaat agcagacgcg ttggtcgaaa aagggtttgc ggtcaagtcc gttgtcaaca      1140
     tcatcaacag gaacaaagtc gcacagccgc tctttaaaat cgagctccaa ccagatgcaa      1200
     agcggtcgaa gccaaatgaa gtgcacccga tctacaacct acagcttcta ttgcacagaa      1260
     gaatcaccgt agaggagccc cataagagac gccaaccacc gcagtgtaaa aactgccagg      1320
     aatacaacca cacctctaac aattgcaatc ttaggtcagt gtgtgttggc tgcggcgaac      1380
     atcatgaaga tggaatttgc accaaggaca gaaacaacgt cgcactaaga ctatgcagca      1440
     actgtggagg gaaccacacg gccaactaca gaggatgtcc tgtctttaag gatcttaaat      1500
     cacacctaaa cgggcgcaaa cccccagctg gaccaaaaat catcttcaac gcctccaaaa      1560
     ctacaccgga ggtcttcttc gccaaggctg ctagatcatc caacatgact gctacaacca      1620
     gtcctagtgt atccttcgct agtgtgctcc gaactggaca gacggagccc gcgaaagaga      1680
     ccccgtcact ccgccatcta cagaatccgc aacctagcgc accagagctt ggccagcaaa      1740
     ctccaagtgg tctagaggcc ctattgatct cactcaatca aaacatgacc acttttatga      1800
     cgttcatgca aaactgtatg cacgaactga tgcggaatca aaacctgctt atccagaagc      1860
     ttatcgagaa taaataatgg cttccctacg tctatgtctt tggaatgcta acggcatctc      1920
     caagcacaaa aatgaactgc aactattcct agactcaagt gaaatcgacg ttttgctgat      1980
     ttcggaaaca catttaacat caaaaaataa ttttcaaata ccaaaatata ccttctacgc      2040
     aacaaaccat ccagacggaa aagctcatgg cgggaccggt atcctaatca aaaaccgtat      2100
     aaaacactcg ttcctcaaca gatttgaaac acagcaccta caagcaactg ctataaccgt      2160
     ccaaaccagc tgcggcaaca ctacattggt cgccctgtac tgcccaccac gcttctcaat      2220
     ctctgaaaag gaatttaccg atttctttaa cacactcgga gatcgcttca ttgcagcagg      2280
     ggactataac gccaaacata cgcactgggg atctcgcctg gtaaatccta aaggaaagca      2340
     gttgtacaac acaatagtca accctctcaa taagatggat tgcgtctcac cgggtaggcc      2400
     tacttattgg cccacagatc cacagaaagt gcctgacttg attgatttcg cagtaaccaa      2460
     gaggattcca cgtaatcgga tcactgcgga aacactgcta gatttaactt ccgatcactc      2520
     tccagtgcta ttcacattat taacaagacc tcaagtactt gatcgcccat ataggcttac      2580
     aaacaacaaa acaaattggc ttaaatttaa aatgtacatg agtgcccaca ttgactgttc      2640
     gccgaaactg gatgctgcag aggacattga tatgtgcgtc tctgcacttg agtcgatgat      2700
     gggagctgca gcaagagtat ctactccaca tgcctcttct tacaccaaac ctgttgacag      2760
     gcctacgaac cggcggatag aacaattagt aacggaaaaa cgacgtctaa gaagagaatg      2820
     gcagattact cgatcaccag cagcaaaact tcgcctaagg caagctcatc gcaacctctc      2880
     caaggcgtta agacaagagg aaagctgggc tcaaaggaaa tacatagaaa agctcagtcc      2940
     aaccagcact aaacatcctc tgtggaaagc ccacccaact ttaagcgctc ctacagagac      3000
     aatttcaccg ataaggagtc caaccggtgg atgggcccgc agtgacgaag agagggcatc      3060
     cgtatttgcc acacatctta aaatggtttt ccagccaaat ccaacatcaa actcatctgt      3120
     acttccccct tcgaacacat taacggatag tgagtactcg gaactccaat cggacgagat      3180
     cactgcagtt attaaaaacc acataaagcc gaaaaaagcc cctggccatg acctaatcac      3240
     accgaaaatg atcctagaac tccctatcat tgcaatacaa tatatctgca aactgttcaa      3300
     cgctataata aaaattggct acttcccaag aacatggaaa aagtccacta tcatcatgat      3360
     tcctaaagtg ggaaaggaca aaacccagcc atcatcctat aggccaatta gtttgctgcc      3420
     atgtctttcg aagctttttg aaaaggtcct gcagatccgc ctaaactcat ttctggcatc      3480
     ggagaacaca atcccttcac accagtttgg cttccgcgaa aaacatggta caattgaaca      3540
     agtcaatcgc ataacatccg aaatacgaac agcattcgaa ctaaaagaat actgtgcggc      3600
     tgtctttctc gacgttgccc aggctttcga tagagtttgg ctggagggtc tgatgttcaa      3660
     aatccggcaa aaactgccac agtacacaca caaactcatg gaatcttacc tttacaatag      3720
     gaaattcgct gtaagatgta atggctccgt ctccgctgat tttgaaatca aagctggtgt      3780
     accgcaaggc agtgtactcg gcccattgct ctacctgctg tacactgcag acctaccaac      3840
     gagtttagga cttacaacgt ccacttttgc cgatgacacg gcaatcctta gcagatccaa      3900
     atgcccaata caagcctctg caaaactaga ggaacacctt aaggtggtag aggaatggct      3960
     agcaacctgg cgtatccggg tcaacgagca gaaatgcaaa catgttacat ttacgcttaa      4020
     cagaagaaac tgcccagctc taatgctaaa caacgtacca gttcctcaag ccgtggatgt      4080
     cacttacctt ggcatccacc tagacagaag actaacttgg cgcaagcaca tcgaagcaaa      4140
     aaagtcacag cttaaactga aagcgagtag cctacattgg atcatcaatg ctcggtcccc      4200
     tctacgtctg gagtataaag tcctcctata caactccgta ctgaaaccca tctggactta      4260
     cggagccgta ctatggggaa atgcaagtac cagcaatgtc gatattatac aaagagcgca      4320
     gtcgaagatt ttaagatcaa tcacgggggc cccgtggtat atacgaaacg acaacattca      4380
     aaatgatcta aatataccta gcgtaaaatc tgaaataggt actcaacaac taaagtattc      4440
     tgcgaaactg gatgcacacc caaatgttct tgccaattcc cttacgcgaa ctaataatag      4500
     aactcgtctt aaaagaaatg acagaccaac ccaataacaa gtgattaggg ccgcctgcaa      4560
     tatccccagg atttatctta agtactagtc taagaaaaat atctcaaact tgttgttagg      4620
     ctctaattta agagtagatt caacaaatat atattaaacg ttaaaaaaaa aaaaaaaaaa      4680
     aaa                                                                    4683
//
ID   Jockey-1_DYa repbase;    DNA;    INV; 4785 BP.
XX
AC   .
XX
DT   16-MAY-2009 (Rel. 14.05, Created)
DT   16-MAY-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4785
RA   Jurka J.;
RT   "LINE-type retrotransposon families from fruit fly.";
RL   Repbase Reports 9(5), 966-966 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           396..1988
FT                 /product="Jockey-1_DYa_1p"
FT                 /translation="MSSDQKNERRSSVNPRNACYSYFSTRDIDQNQKSTKS
FT                 NSTLLTVDSKRASSCSPSLLTPTPASWSYQCQTPSPPASLNEAPTTSSAKI
FT                 SAVNSPPIIKPTTNTASSVPTAAQQNKMATKTVSLDKQQAVPAIQTGMDRY
FT                 IQIKRKLSPPNTVGNKPKINRTNKSTDQTRSSNENRFSILAEADNNQPELG
FT                 QETQRKPKPPPIYIREKSSSALVNKIVALVGDENFHVVPLIKGNIHETKVQ
FT                 TKSEEHFRAVSKYLEDTKKNFYTYQLKSSKGLQVVLKGIEPDVTPSEIQEA
FT                 LKARGFCAKNVSNIVNRNKKPQPLFKVELEPDSKALKKNEVHPIYKLQLLL
FT                 HRRITVEEPHKRNGPVQCTNCQEYGHTKTYCTLRTVCVVCGDFHNSVNCPA
FT                 NKEDPQMKKCGNCGGNHTANYRGCAVYKELKSRMRRATATHQQHFAKAARS
FT                 SFGQLDTTKGISYAEALRTGMENPPQPHSENAQQVPVQPQSKLESMMFTMQ
FT                 QSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK*"
FT   CDS           1992..4649
FT                 /product="Jockey-1_DYa_2p"
FT                 /translation="MTNLRISMWNANGISRHKLEITQFLNVNHIDAMLLVE
FT                 THLTGRYNFHIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFHQRFATNYL
FT                 QATSIKVISGNGNLCIAAVYCPPRFNISEGQFMDFYNTLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNALIKVSNKLDYVSPGSPTYWPADPKKIPDLID
FT                 FAVTKNIPRNLISAIALPDLSSDHSPLLISLLQSPEIADHPHMLTSHNTNW
FT                 MKYRKYVSSHIELTPQLNIEADIDCSTAALEEVLVTAARISTPKRKDGEFK
FT                 KFKTNRQIEQLVLEKRRLRRAWQTSRSPCSKQRLTEATRNLNRALKQEAEN
FT                 EQLKYIGKLSPTSTKHPLWRAHPNLSSPIQTVTPIRNSSGCWARSDKDRAE
FT                 SFALHLRGVFQPNPAANDYVPPQIHLETESTPTTFQPNEITKVIRELKPKK
FT                 APGGDLITTKMIMELPYCAIKVICKLFNGIISLGYYPRKWKKSIIIMIPKP
FT                 GKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPYMGAHNIIPAHQFGFREK
FT                 HGTIEQVNRITSEIRTAFEHREYCSAIFLDVSQAFDRVWLKGLMHKIKTHL
FT                 PGYTHKLLESYLYNRAFAVRCNTTISDSYTIEAGVPQGSALGPTLFVLYTA
FT                 DIPTSDRLTTSTFADDTAILSRSRCPVRATTQLANHLVVVEKWLSDWRIKI
FT                 NEQKCKHITFTLNRQTCPPLCMNSTQIPQVNEVTYLGIHLDRRLTWRRHIK
FT                 CKKLHLKLKASSLHWIINSRSPLCLDYKVLLYNSTLKPIWTYGSQLWGNAS
FT                 RTNIDIIQRAQSKILRTITGAPWYIRNQNIHRDLGILAVKDEIDKQKASYN
FT                 EKLSVHPNPLARVLTRVSSRTRLQRTDLPTQP*"
XX
SQ   Sequence 4785 BP; 1588 A; 1264 C; 946 G; 987 T; 0 other;
     aaaagtctac acattcgtgg aagcggacgt ctttcgatag cgctgcgcga aaatctcgtg        60
     ttaacgtggt tgtgctgaac agtgttagcg gcaaatctgc aaaaacaaac ggtggacttg       120
     tgccatagtt ctgcgcgtaa cctaggcgtg ctgaatgacc gcgtgttgca ggtggttagc       180
     aaaatatata agtttgcaat tcttgcagct gataaaacag ctgacagcgc tgccaactta       240
     tctcggtggg cgatcatgag cgagtggcgt tgccacatca accgtaagac cagtgctgag       300
     gtgcgaacgt tgggcgcgta atttcaaaat taaattcaaa atttgattta atttaattta       360
     aacaaataag tgccacgcat aacaagctcg aaaaaatgag cagcgatcaa aagaatgagc       420
     gtagaagctc cgtcaaccca agaaatgctt gctactccta tttctcaact agagatatag       480
     atcaaaatca gaagtcgaca aagagcaact cgactctact gaccgtcgac agcaagagag       540
     ccagctcttg ctcaccctct ctgctcaccc caactcccgc atcatggagt taccaatgcc       600
     aaaccccatc accgccggct tcgctgaatg aagctccaac aacaagcagt gctaaaattt       660
     ctgcagtaaa ctcaccacca ataattaaac caactaccaa tactgcgagt tcggtcccaa       720
     cggccgcaca acaaaataaa atggcaacaa aaacagttag cctcgataag caacaagcgg       780
     tcccggctat acagaccggt atggaccgct acatccagat taagcgcaag cttagtccac       840
     ccaacacggt tggcaataaa ccaaagatca atcgaaccaa caaaagcacc gatcaaacga       900
     ggagctccaa tgaaaaccga ttctccatct tagcagaggc ggacaacaac caaccagagt       960
     tggggcagga gacccaaagg aaacctaagc ccccacctat ttacataagg gaaaaaagtt      1020
     caagcgccct ggtcaacaaa attgttgcgc tggtcgggga cgagaatttc catgttgttc      1080
     cgcttattaa agggaacata cacgaaacaa aggttcaaac gaagtccgaa gaacacttcc      1140
     gagctgtgtc taagtacctg gaagacacaa aaaagaactt ttacacctat caactaaaaa      1200
     gcagcaaggg actgcaagtt gtgctaaaag gtatagaacc tgacgtcacc ccctccgaaa      1260
     ttcaggaagc ccttaaggcc aggggcttct gtgccaaaaa tgttagcaat attgttaaca      1320
     gaaacaaaaa accgcaacca cttttcaagg tagagctcga accagatagc aaagccttaa      1380
     agaaaaacga agtgcacccg atctacaagc tgcagctctt actgcatcga agaatcaccg      1440
     tggaagaacc ccacaaacgc aacggccctg ttcaatgcac aaactgccaa gagtatggac      1500
     acaccaagac atactgcaca cttcggacgg tctgcgtagt ctgcggagac ttccacaact      1560
     ccgtaaactg ccccgcaaac aaagaagacc cccaaatgaa aaaatgtggc aactgtggag      1620
     gaaaccatac ggcaaactac agaggctgtg cggtctacaa ggagctgaag agtcgcatgc      1680
     gacgagcgac agctacgcac caacaacatt tcgccaaggc agccagatca tcttttgggc      1740
     agctagatac aaccaaggga atctcctacg ccgaagcact aagaacaggc atggaaaatc      1800
     cgccccagcc tcactcagaa aatgctcagc aggttccagt gcagccgcaa agcaaattgg      1860
     aatctatgat gttcaccatg caacaaagta tgatggaact tatgtcattc atgaaaacaa      1920
     ccatgcaaac ccttgttcag aaccagaaca tggtaattca gttgcttgta gcacaacagt      1980
     ccaaataata aatgactaac ctacgtatat ccatgtggaa tgccaacggc atttcacggc      2040
     ataaacttga aataactcaa ttcctaaacg taaatcacat cgacgccatg ctgctggttg      2100
     aaacgcacct cacagggaga tataacttcc atataagagg ttataccttt taccgcacag      2160
     atcatccgga tggcaaggcc cacggcggaa cgggcatctt aatcagagaa cgcatcaaac      2220
     accactttca tcaaaggttt gcaacaaatt acctgcaagc cacgtccata aaagtgatct      2280
     caggaaacgg caacctttgc attgccgctg tctactgccc acctcgattt aatatctctg      2340
     aaggtcaatt catggacttc tacaacactc tgggggatcg cttcatagcc gcaggagact      2400
     acaacgccaa acacacgcac tggggatcac gcctcgtgac tcccaaggga aggcaactgt      2460
     ataatgcact tataaaggtg agcaataaac tggactacgt ttcccctggt agccccacat      2520
     attggcctgc agacccaaaa aagatcccag atctaattga tttcgcggtg acaaaaaaca      2580
     tcccacgcaa tttaataagc gccatagcac taccggatct ctcatctgac cactcgcctt      2640
     tgttgataag ccttcttcaa agcccagaaa ttgcggacca cccccacatg ctgacgtcgc      2700
     acaacactaa ctggatgaaa tacagaaagt atgtgagttc ccacattgag ctaactcccc      2760
     aactaaatat cgaagcggac atcgactgct ccaccgccgc actggaagag gtactcgtca      2820
     cagcagctag gatctcaacc cctaaacgga aggatgggga atttaagaag ttcaaaacca      2880
     accggcaaat tgaacagctg gttctggaaa agaggcgtct gcgacgagcg tggcaaacca      2940
     gcagatcgcc atgttcaaag caacgtctta ctgaagccac ccgcaatcta aaccgggccc      3000
     tgaagcaaga agctgaaaat gaacaactta aatatattgg aaaactctcg ccaactagca      3060
     caaagcatcc cttgtggagg gctcacccaa atctaagctc tccaattcaa accgtcaccc      3120
     ctataaggaa ttcttcaggg tgctgggccc gcagcgacaa agatagagcc gaatcatttg      3180
     ccttacatct cagaggcgta ttccagccga accctgcagc aaatgattat gttcctccgc      3240
     aaatccacct cgaaactgaa tccacgccaa ctacatttca gccgaacgag atcacaaaag      3300
     tcatcaggga gctaaaacca aaaaaggctc caggcggtga cctaataact acaaaaatga      3360
     taatggaact tccgtactgt gctattaagg tcatctgtaa actcttcaat ggaatcataa      3420
     gtctcggcta ctatccaagg aaatggaaaa aatcaattat tataatgata ccgaagcccg      3480
     gaaaagatca cacgattccg tcatcttaca gaccaataag tttactatca tgcctgtcca      3540
     aattattcga aaaatgcctt ctaacgcgca taataccata tatgggagcc cacaacatta      3600
     tcccagccca tcaatttggc ttcagagaaa aacacggaac tatagagcaa gtaaacagaa      3660
     taacatcaga aattcgcaca gccttcgaac atagggaata ttgcagcgcg atatttctcg      3720
     acgtatctca agcattcgac cgcgtctggc tcaaaggtct catgcataaa attaaaacac      3780
     acttgcccgg gtacactcat aaactccttg aatcctacct ctacaataga gccttcgcag      3840
     taagatgtaa tacaacaatt tccgacagct acactatcga agctggggtc ccacaaggta      3900
     gcgcacttgg gccaacttta ttcgtccttt acacagcaga tattcccacg agtgaccgac      3960
     taacaacatc caccttcgcc gacgacactg cgatccttag ccgctccaga tgcccagtcc      4020
     gtgcaacaac ccaactcgcc aaccacctcg tggtagtcga gaagtggcta tctgactggc      4080
     gtattaaaat aaacgaacaa aagtgtaaac acataacgtt tacccttaac agacaaactt      4140
     gccctccgct ctgtatgaat agcacgcaga tcccccaagt taatgaagta acgtatctcg      4200
     gcatccacct cgacagacgt ctaacatggc gtagacatat caaatgcaag aaactgcacc      4260
     taaaactgaa agccagcagc ctccactgga ttataaactc acgatcgccc ttgtgtctgg      4320
     actacaaggt cctgctctac aactccactc ttaagccaat ctggacgtat ggctcccagc      4380
     tgtgggggaa cgcgagcaga accaacatag acatcataca gcgagcccaa tcaaagatcc      4440
     tgcgaactat cactggggca ccatggtata ttcgtaacca aaacatccac agggacctcg      4500
     gcattctcgc agtaaaagat gaaatagaca agcaaaaagc gtcctacaat gaaaaactat      4560
     ctgtccaccc aaatcctcta gcaagggtct tgactcgggt ctccagccga acccgcctgc      4620
     aacgtacaga ccttccaacc cagccataac ttgtcagggc cactgtctca gtctacatga      4680
     ctcctagtta ggttatagta taagatttga tacacttatt gttagtctcg taaatgagaa      4740
     gattcaataa ataaaagcaa agcatttaaa aaaaaaaaaa aaaaa                      4785
//
ID   Jockey-1_Hmel repbase;    DNA;    INV; 5183 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-5183
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2530..4893
FT                 /product="Jockey-1_Hmel_1p"
FT                 /translation="XSLXKYNAXVIGPPSPTRXSXLGTGXVLDIAILSNVX
FT                 LXQXSIXTIXDLDSDHRPVILKLGXXRPSGPPTKTVXDWRXFXKLLRSNES
FT                 PXKELIPGIADSAXLAIDAANKFTEYIQNTIQSCSKEVPNLPEGRFEISEK
FT                 LRRLIRRRNKAMRRHDAYPTDDNRREFNRLKRRVRFEFELLRGESWDXKLE
FT                 GLAPSHQAFWALSRVFRVDCLSTMPPLIRSDLSIAADDTEKAECLADSLEA
FT                 QCTPSSQPCDPSHIARVDSAVAEWALTPPQGEPLRPTSEDEVKDIIKNLKD
FT                 RKAPGPDKLSNRTLKSLPAQFLSLLVIIFNSLLMSCTFPDEWKEAIVIGIP
FT                 KPNKPRNMPSSYRPISLLSCLGKIYERIILIRLSEVVEAKSLLIXEQFGFR
FT                 KKHSAIHQVHRVVEHIARHNLRDPXHSNTAAIFLDIAKAFDKVWHNGLIYK
FT                 LRAVYGLPDCLVHILRDFLSNRYFRYKVEGTLSSPRLLRAGVPQGSTLSPI
FT                 LYSLYSSDIPLTPGVHLAMYADDTALFTTSRCTILLKDRLQKAARALGEWF
FT                 RQWRIEVNPEKSKAILFPLNKNIRVSTIHLLDKPIPWEKQVKYLGVTLDSR
FT                 LTFKPHITKVCNKAKYILNRLYYLINKNSKMSLRNKLTLYKACIRPVLTYA
FT                 CVAFAHTKLAPLQKVQNKFLRIASGSPWYVRNVDLHRDFELESIHEHCKRL
FT                 AKRYFERAGSHANPLVAEACNYTPHAIRRRPRSVLLDPDDAITVANGPYVG
FT                 RKHTTHARHTHRRRRNRRRSLAYLTARRRLGAVGSSG"
XX
SQ   Sequence 5183 BP; 1211 A; 1473 C; 1183 G; 1118 T; 198 other;
     agatccgatt cggccttgct tcggtgaggt cgcacaattg ggctattata tttatttcga        60
     tcccttgtcg aagtgntact gtatttatat tagtgttgtg ctgcggattc ctgcgactgc       120
     tgagctgcgt ggcgtcctgc tgcgctgcgt tgccctgtgg ttgccgagtc ccgcatcgct       180
     cgtttccagc gtccggattg tttgttcagt aagtgaatac acagttgttn ttagntaggt       240
     actcacctac cgttcaccga cggtagattt tgcttgccaa atatagtgta gttttaaant       300
     acacaccccg tccctcgccg caaggtgagg ggagagacaa agcatggccg gcctcagtcg       360
     ctccgagctg ctgaggtact tagagacctt ccacggngac acgtataacg ccgtggtcaa       420
     gttcgcgcaa acgcgccatg atgcgcctag ctcgcctagc gcgcccgatt tcggcccgga       480
     tgccgatatg cagccttcag ctgccggccc gagtgccgan gacgagccga tgctctccgg       540
     cgggccctgc gacctcggtg tcgccccgtc gagggagcac tcccgcgacc cctcaccgat       600
     ccagtctggt gaagagatgg aggtgggcaa ttgcccttcc tctgatacgg aaaatgatga       660
     cggtttcgag accgtcggat cncgctcggc caagcgtaag gccagggccc ctaaggcccc       720
     ccccccgccc aaaaaggcga acaancccga cggccgccgt tcccgcgcga acganttaac       780
     ggttttcccc tcccctgccc ccgcctcngc ggttgagcgg gaagaggacg actccccccg       840
     cgcgccccgc gccccccgta ttaaaccgcc gccacccatt tatgtgcaag agaagcacaa       900
     atggggaaaa gtatcccagt ggcttaatag ccacaatatt caatacacta ccgcgcgctt       960
     aacgcaggta ggtattaaaa tccaagttag gtcttcgtcg gaacaccgac aattcacctc      1020
     tttcctncgn gantaccaaa taggntacca ntcntacgcn ctngaggacg agcgccaact      1080
     gcgcgtcgtc cttaagggca ttccaaaaga gatcgaagtc gatctcgtcc ttgacgatct      1140
     caaaagcaag ggcttccccg tgcgccaggc gcaccgtctn tataattctc gcacnaaagc      1200
     gaaattcgac attgtnntng tnatcctnga cctcactaag gagggaaagg aaattttcaa      1260
     cctgaggtcg gtgtgttctc tcaccggcat cagagtcgaa cccccacact cgaggggtct      1320
     catagggcag tgtcatcgct gccaattata cgggcactct gcccgcaatt gtttcgcgcg      1380
     gcctaggtgc gtcaagtgcc tagacgatca cgcgaccgcg gattgtcccc gcaaaatccc      1440
     cgatcccgct gtgcccccta gctgcgtgct ntgngagacg cagggccatc ccgcgaacta      1500
     tcgcggatgt tcccgcgcgc cgcgcagacg cactaggcgc ggaggcaaaa agcgcncctc      1560
     caataaaaag gagccggctc ctactcaata cgagcccgcc cctctcccta aagagaatgc      1620
     gtggtttaaa cccgcaccta caccggtcgt cgcccncgcn gcggcaccgg tacagccgcc      1680
     taccnctcag gtagcggctc cccgccccgc gctcgcgcct tccggcgcga ccgcgaccgc      1740
     gcccttgcgc ccggcgcctt cccgcgccnn nncnnnnccn nnncncgcnn nttcncgcgc      1800
     cgcgcccgcn ccctcntcta acgctagcga cttagcactt gtgctaagat tcgctagatg      1860
     ttttgatttn aaagaaatca aagtcctcgc ggcgaaactt aggaayacga ayggtycmga      1920
     cgaycgcgcy caagykatwa tmgakcatat mgatctcmts gaagccatys mrggctycrt      1980
     mkcggtwwaw aatttttcca atggcggtca tmaatagatt yacyccaykr cccgctgact      2040
     cgcaactcgc gcgtattaar ccwagagccc tgtcwatagc gacytttaac gcwaayggtg      2100
     tcaaacgyca amrwgagkcw gtgagygcct tcgckcacrc ycaycaatta gatatcttwt      2160
     gtatacagga gwcttttctt aarccygskg ttcgyagtcc yrgcattgcg aactacaggw      2220
     ttgtaagraa tgatagrgcc accmamggyg gmggcactat gatttattac aaraagaatt      2280
     tacactgtat accrctcgac cctccgtctc tygaagcmgc cgaggcgtcg gtgtgycagg      2340
     tattcctcac aggccatcag ccwttratta twgcytccgt ttatcgttcg ssaaataggc      2400
     aactattaga aagcgacatt ttrkcgctac ttagtatggg wgactcggtc cttctgatcg      2460
     gggatytcaa ttgyaaacat aramwttgga attcgtcgrt gactmatryc rrcggyarga      2520
     grctyctagm mttcactagw gaaatataac gcttkygtta taggcccgcc ttcwcccacy      2580
     cgcyttagtg ycctcggcac aggcgakgtw ctcgayatwg csatwctwtc gaaygtwgsm      2640
     ytrtskcaac rttcaataga wacmattcyc gacctmgatt cggaccaycg tcctgtcatt      2700
     ctcaarttag gygasgwgcg cccctcaggc ccwcccacya aaacagtrrt cgactggagg      2760
     aratttgsaa agctcctccg ttcgaatgaa tcccctytwa aggaattaat acctggcatc      2820
     gccgactccg cggmgytagc ratagacgcg gcgaataaat ttaccgaata tattcaaaac      2880
     acaatccaga gctgctcgaa agaggtacca aacctacccg aaggtaggtt tgaaatctca      2940
     gaaaagctcm gacgattgat tagacgcaga aayaaagcaa tgagacgaca cgacgcatac      3000
     ccgactgacg ataatcgtag ggaatttaat agattaaaga ggagagttcg attcgagttc      3060
     gaacttctgc gcggdgagtc gtgggataad aagctcgagg ggctcgctcc atcgcaccag      3120
     gcattctggg cgctgtcgcg wgtttttaga gtcgattgtc tctcgactat gcctcctctc      3180
     attaggtcag atttatcaat tgccgccgat gacaccgaaa aagcggaatg tctcgctgac      3240
     agtttagagg ctcaatgtac tccgagtagt cagccctgcg acccgagcca cattgcgcgc      3300
     gtggattccg cggtcgcaga atgggcgctg acgcccccgc aaggggaacc gctccgcccg      3360
     acctcggaag acgaggtcaa agacatcatc aaaaatctca aagataggaa ggccccgggg      3420
     cccgataaat tgtctaatag aacacttaag tcccttccgg ctcagttctt atctctattg      3480
     gtcattattt ttaattccct tctcatgtcg tgcaccttcc ccgacgagtg gaaggaagcc      3540
     attgtcatag gtataccgaa acctaacaag ccgcggaata tgccctctag ctatagacct      3600
     atcagccttc tcagctgctt aggaaaaatt tatgagagaa tcattctcat tagactctcc      3660
     gaggtggtag aggccaaatc tctgctcatc aawgagcaat tcggtttcag aaagaaacat      3720
     tccgccatac atcaagtcca ccgtgttgta gagcatatag ctcgacacaa ccttagggat      3780
     ccttytcaca gcaatacagc tgctattttt ctcgatatag cgaaagcttt cgataaagtc      3840
     tggcataacg gcttgattta caagctgcgc gccgtttacg gcttgccaga ctgtctcgta      3900
     cacatcctgc gggactttct ctcgaataga tactttcgct ataaagtcga aggcactctc      3960
     tcttcccccc gcctcctccg cgcaggcgtg ccacaaggct ctacgctaag tcctatcctg      4020
     tactcgttgt actccagtga tatcccgctc actccgggtg ttcacctggc tatgtacgcc      4080
     gacgatacag ccctcttcac aacctcgcgt tgtactatcc tattaaaaga tcgactccag      4140
     aaagcggccc gcgcactcgg tgagtggttc cgccaatgga gaatcgaagt caatcccgag      4200
     aagagtaaag caatactctt ccctctcaat aaaaatatwa gagtctctac catccatctc      4260
     ttagacaaac ccattccctg ggaaaaacag gtcaaatatc taggtgtcac tctagactct      4320
     agattaactt tcaaacccca cattacaaaa gtctgcaata aagcaaagta cattctcaat      4380
     agattatatt atctcataaa caagaatagt aaaatgtcac ttagaaataa gctgacacta      4440
     tacaaagctt gtattagacc tgtccttact tacgcttgcg ttgcgttcgc gcacaccaag      4500
     cttgctccct tgcaaaaagt gcaaaataaa ttcctgcgca tcgcatcagg ttccccctgg      4560
     tacgtgcgta atgtcgacct acatagagat tttgaactgg aatcgattca cgagcactgc      4620
     aaacgcttag cgaagcgcta ctttgagcgc gcaggctcgc acgcgaaccc cctcgtcgcy      4680
     gaggcgtgta attacacgcc tcacgcgatt cgtagacgcc cgcgtagcgt cctcttagac      4740
     cccgatgacg ccattaccgt agcaaacggc ccgtacgtag gtaggaaaca cactacacac      4800
     gcacgacaca cacaccgtcg tcgccggaat cgacgacgta gtctagctta tctcacggcc      4860
     cggcggcgcc tcggcgccgt cgggtccagc ggttagggac cgttagctcc cttagattag      4920
     tctaatttta tcccccggtc gcggcttctg tgtcgcggcc ggctttgctt agaataggga      4980
     aactcccagc ccgctcgacg accgcaagcc gaggttcgag ccccgcaggg ggcgcccttg      5040
     cgtcgtcggc actccccaca ggcagccaca cagtgcctgc atattttcag ggacagagta      5100
     ccctcttccc tacccacccg gtgtcgctgt aaaggccagt aaggctaaca gcattaaagt      5160
     caagtccgaa aaaaaaaaaa aaa                                              5183
//
ID   Jockey-1_LMi repbase;    DNA;    INV; 5662 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5662
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3147-3147 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2143..4908,4887..5222)
FT                 /product="Jockey-1_LMi_1p"
FT                 /translation="APPHEHLKPQHRVDAFLLNETFLLPHLXVSTTPYILH
FT                 RHDSPRPPARGGVAFGHLRHHPVRPHPLLNIPYEHLIHTLFLPSLTVTCAT
FT                 IYVRSHVPIPYDFLAHIDSTFTTYVVAADLNIHSRTPAELRRWHQFIPTIN
FT                 GDIVPLPRHTCPCSNTTPDVVIVSPNLLGRITADVLDPIGSDHDPVLLTLT
FT                 PNVHRPQNPRPPPPPKLVHDYSRADWDAFRLSITHQVESHPLPLHSPDDID
FT                 QAASFLQQTLSDAIHSHIPTKAVQPHRPTLPPQAVLLLRESRRLYRSFLRT
FT                 RDRDTLLRHRQLQRHVRSLLTAKKCRDWHQTVTRLNAHLPINSSRYWNAFH
FT                 RLTGSKPTPTYPLLHLDQPLPDNASKANHFASFLSDVFSIPDNPNFDYSLF
FT                 PDVHEKTDVSIPPLAPGFQYLDHIPPSDXNTPITAHDIQLILRTKRNTAPG
FT                 HDRITYRHLKECPLPFLTTLASLYTTILYTGCYPHLWKISRVLMFLKPNKP
FT                 PSDASSYRPICLTPVFSKVFESILSRRIHHHLQLHHLLPDTQCGFRPSFST
FT                 DDQLLRLQLLSLQLNSRRAAIFVSLDLERAYDRVWHSGLLFKLQTYALPIN
FT                 LVRVIASFLSNRPTYVTIHNTDSRLFYPSAGVPQGSVLSPLLYLLYTSDMP
FT                 KPAPPIHLFQYADDTAFLALAPTLARSNRLLQEHLDLFAAWCNQWLLSINP
FT                 TKTQAIIVGRTTPSFRPRDFYLTLHNRPIRLTPTLKYLGLTIDRTLSWTPH
FT                 LRTIQEKARSRLRLLKLLVGRTWGLNPSTVLYTYKSLIRPILCVAHPAWIS
FT                 APPSFYKSLEILERHALCLAFRIPLYPPSPTRILYDLIPFPRLVLFIEHLR
FT                 LRYISRKSDPPNPLVHPLLSAPGPLPRLHHCIPPALHLSTLQILSRGNFRT
FT                 LPLPDDALRPDIYPSYQLHLPFIPAVILPLAPSPPSLPEGPDYPSLPVPSP
FT                 LLIPPSCPSGSSSYRPPLSFFPVASWDIIPPRPFPTGPVAPPHPLPLHSSL
FT                 FPPHHIFNTVCAPPSVEPPLCFDKCGVL"
XX
SQ   Sequence 5662 BP; 1005 A; 2391 C; 889 G; 1373 T; 4 other;
     tctttcgaaa tcgctactgt cgcgttactt tgtgcgatat ttgttgtgtt tcgcgtttcg        60
     caactcgttt ttcgtccgtt gctgtgctct gcgtcgtctg cagacgtctt cgcgtgttgt       120
     ctgccgccgc gaagtgccgc tgtcgccgct gcgactgccg acgagggccc cgccgcccgc       180
     ccggccgatc cggactgcag tacgtcgtgt cgccgcccca tcggcgtccg acgcctccgg       240
     tgttttcgct gctgccgccg ccgcccgcag ccacctcttc tcgccccgga aggtgcttct       300
     ccggcccacg ccgagttcgc cgccgcccag cgcgttctgc ccggccccca gcccgccgga       360
     gcgcgtccca ccgcgccgcc tcgccgcgcc gcgccgctcc cgcccccacc tgggccgccg       420
     ggaggcacgt ccgccgccgc cgctgctcct gcagcagtga tctacgtttt aaggtgactc       480
     ttcgacgctg tcatgtcgac cttgccccct actactgtgt cctccaccgt catttttacc       540
     acgccctccc atgcccccac caccatctcc tggagcacat cctcccctct cctacctgcc       600
     acgattccct ccctcctcac cctcaccact ccctcagctg tcgccctctc ctctgccccc       660
     acacaagctg ctgccctcgt cccacactct cttgcctctt ccaccgttcc cccactcgat       720
     tccttccccc cctccccgac tcccgcggtg accgtgccgc ggttcgcacc cggcagaccg       780
     ccgtggactc cttcctctcc cacccgacga cgccgccgct gccgcagggc cggctccgcg       840
     ccaccttcca gtcacccctg tccccactcc tgtctcccag ccactcctaa aaccgaagaa       900
     gaccaaacga gcgtctacag acgccacctc ctcggtgaca aaaagcccgc cgatcctctc       960
     gccactggcc caccggtccc gatggaagcc gcccctctcc cccctaccca gcttgcacca      1020
     cctcccccgc cacccctcct tccctcccaa ccccctgctc tccacacttt cgtcctcaat      1080
     aaccctgacc cccaactcct agactgccgt gccctcactc tcctcttccg gcagtatgcc      1140
     ccttctgccc ccatctccca aatcatccct cggagggact ctgttccctc aaatcacctg      1200
     accccgacct ccacacacag atcctccaca agatcccccg catccacttt ggacccaatg      1260
     ccacccttgt ccccctcccc cctccagcct ccaatcgcca atcccctcct ccccatcgtc      1320
     ctcccaccct cactgctgtg atcaccaaat tgaacccggg gatcacagag gaagaggtgt      1380
     tggaggaact ccggcgggat ccccgcctct ccatccgttc tgctcgtcca ttaacaatgc      1440
     gacgggcccc acctacctca tgcgcgtctt cactgaagac gcaccatcca tcaaccacct      1500
     cctccgcaat ggggccctca tttataaccg cctccaccag gtggaacctt cccgagcacc      1560
     tccccagtca tatcgctgct cccgatgcct cacctataac gaccaccttg ccgaacattg      1620
     ccgtctcccc cctgtatgcc cacactgcaa aggccaacac tttcaaacct cctgccctaa      1680
     cctcgctgcc accccctcct gtaacacctg cggtggggca caccccacgt actcttacaa      1740
     atgtaagtcc cgcccccctc ccaccaaaga agaattcacc gtccctgtcc gtcccactga      1800
     tcccccaatt cccgccaata actccttatg ccctcccccc acagcagagg acatcatccg      1860
     gttcctgact atcgtcctcc aaaatatcca ccctttccag cgccctcaca ccctccacca      1920
     agtctccctg gccgctcgct ccctcttcaa ccttgatttt aaggccacaa cctcccaaaa      1980
     ccacatccac ttcaccttct cccgaaccga ccgcccccac accctagttt agtccccaca      2040
     cccgctccct ttcccctccc tctccccgcc tttcaacctc attatggcgc agcaacaatt      2100
     taacatcttg tactccaata ttcgctccct tcccaccaat aagctcctcc tcatgaacac      2160
     cttaaacccc aacaccgcgt ggatgccttt ctcctcaacg aaaccttcct cctccctcac      2220
     ctacawgtca gtaccacacc ctatatccta caccgtcacg actctccccg tccccctgca      2280
     cgaggtggag tagcttttgg ccatctccga caccacccgg ttcggccaca tcccctcctc      2340
     aacatccctt atgaacatct catccacacc ctcttcctcc cttccctcac tgtcacctgt      2400
     gctactattt atgtccgctc ccatgttccc atcccttatg acttccttgc tcacatagat      2460
     agcaccttca cgacctacgt ggtcgccgct gacctcaata tccactcccg cactcctgcc      2520
     gaactccgtc ggtggcatca gttcattcct accatcaatg gcgacattgt cccactccca      2580
     cgccacacct gcccctgtag caacaccacc cctgatgtcg tcattgtctc tcccaatctc      2640
     cttgggcgca tcaccgccga cgtccttgac cccataggca gtgatcacga ccctgttctc      2700
     cttaccctca cccccaatgt ccatcgccca cagaatcctc gcccgcctcc acctcctaaa      2760
     ctcgtccatg actactcccg agcagactgg gatgcctttc gcctctccat cacccatcag      2820
     gtcgaaagcc accctctccc cctccactct cccgacgata tcgaccaagc tgcctccttc      2880
     cttcagcaga ccttgtctga tgctatccat tcccacatcc ctaccaaagc tgtccagccg      2940
     caccgtccca cactccctcc acaggctgtc cttctcctgc gggaatcccg ccgcctgtac      3000
     cgctccttcc tccgaacccg tgaccgggat acactcctcc gccaccggca actccagcga      3060
     cacgtgcgca gcctcctgac tgccaaaaaa tgccgggact ggcatcagac agtgacacgg      3120
     cttaatgccc acctccccat caactcgtcc cggtattgga acgccttcca ccgcctcact      3180
     ggatcgaaac ctacgcccac ktaccctctc ctccaccttg accagcccct tcctgataat      3240
     gccagtaagg ctaaccattt tgcctctttc ctctctgatg tcttctccat ccctgacaat      3300
     cctaactttg attattcctt gttcccagat gtccatgaaa aaaccgatgt ctccatccca      3360
     cccctggctc ccggcttcca atacctggac cacatccccc catcagacmt taacaccccm      3420
     atcactgcac acgacataca gttgatactg cgcaccaaac gcaacacggc tcccggccac      3480
     gatcgcatca cataccgcca cctcaaggaa tgtcccctcc ctttcctcac cactcttgct      3540
     tccctctata ccaccatcct ctacactggc tgctaccccc acctgtggaa aatctcccga      3600
     gtcctcatgt tcctcaaacc caacaaaccc ccctctgatg cctcctccta ccgtcccatt      3660
     tgcctcaccc cagtgttcag caaggtcttc gaatccatcc tgtcccgtcg catccatcac      3720
     cacctccagc tccaccacct tctcccagac acccaatgtg gctttcgtcc ttccttctcc      3780
     actgacgacc aactccttcg cttacaactc ctttccctcc agctaaattc ccgtcgtgcc      3840
     gccatctttg tgtccttaga cctcgaacgg gcctacgatc gggtctggca ctctggcctg      3900
     ctcttcaaac tccaaaccta tgctcttccc atcaacctcg tccgggtcat tgcctccttc      3960
     ctctccaacc gccccaccta tgttaccatc cacaacaccg actcccgtct tttctatccc      4020
     tctgctggtg tgccccaagg ctctgtcctt tctcccctcc tatatctcct gtatacctct      4080
     gatatgccta agcctgcccc tcccatacac ctcttccaat atgctgatga caccgctttc      4140
     cttgccttag ctcccaccct cgcccgttcc aaccgcctgc tccaagaaca ccttgacctc      4200
     ttcgccgctt ggtgcaacca gtggctcctg tctataaatc ctaccaaaac ccaggcgatc      4260
     attgtaggtc gtactacccc ttccttccgt ccccgagatt tctatctcac cctccataac      4320
     cgtcccatcc gcctcacccc taccctaaag tacctgggcc tcactattga tcgcaccctc      4380
     tcctggactc cccacctacg cactatccaa gaaaaagccc gctcccgcct ccgcctcctc      4440
     aaactccttg ttggccgaac atggggcctc aacccttcta ccgtcctcta tacctacaaa      4500
     tccctcatcc gtcctatcct atgtgtcgcc catccagcct ggatctccgc tcccccatcc      4560
     ttctacaaat ctctggagat actggagcgc catgccctct gcctcgcctt ccgtatcccc      4620
     ctttatcccc cctcccccac gcggatcctc tatgatctca ttcctttccc ccgactcgtt      4680
     ctctttattg aacatctccg cctccgttac atatcccgca aatcagaccc gcctaatcct      4740
     ctagtccatc ccctcctctc tgcacctggt ccattgccgc gcctccacca ctgtattccc      4800
     cctgctctcc acttgtccac actccagatc ctttcccgtg gcaacttccg taccctcccc      4860
     ctcccggatg atgccctccg acctgacatc tacccttcat accagctgtg atccttcccc      4920
     ttgctccctc tcccccttct ctccctgagg gccccgacta tccctccctt cccgtccctt      4980
     ctcccctcct cattccaccc agctgtccct ccggatcctc ctcttaccgc cctccccttt      5040
     ccttcttccc cgtggcttcc tgggacatca tccccccccg tcccttcccc accggccctg      5100
     tggctcctcc ccaccctctc cctctccact catccctttt ccccccacat cacatcttca      5160
     atactgtgtg tgctccgcca tctgtggaac ctcctttgtg cttcgacaag tgtggtgtcc      5220
     tttagctaca ttgttttatt ttaacaacag tggacggcca acccgcagcc gacaccatca      5280
     gttttaactt gtgtatttct ccgagtgtgt gtgtgttttt tgttttaact ccacaatagc      5340
     ggacggtcac ccatagccgc cgccctatgc tcattttaat tgtgtgtgtg ccactgacct      5400
     tcgagcagct gtttttattc accactatcg ccgttccaaa tcttttatgt cgccaccgtt      5460
     tccctccatt ttatgtactt tgttttatct ccattttaca tctccgtttt atgtatgtgt      5520
     tatctccaaa attttatctc ctttatgttt tatatgtttc tcctgtgtca aattttatat      5580
     ttctgtaggc tgaagagcgc cagtgagcgc tgccagcccg ccccttttta ggggaattga      5640
     aatcacaata aagaaaaaaa aa                                               5662
//
ID   Jockey-1_PPo repbase;    DNA;    INV; 2535 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2535
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3114-3114 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2422
FT                 /product="Jockey-1_PPo_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="IPDQLNTEQDMGVAIGSLTSHVQNVIKDCSRQIPEMN
FT                 NHRWSLQPDIRDLLRRKNAATRAHDMYPTELNRKQLRKLQREVRTRIAAFR
FT                 NERWDSDLSNLKPSHLAFWKLPKSLKGDSCPTMPPLSRPNMIPAMLDDEKA
FT                 ECLADSLEAQCSPSSLPVDPEHLRKVDREVERRSNVPLLDSIPPVTSDEVE
FT                 ELIKNLRPRKAPGSDGITNRVVKLFPAAIIQLLVTIFNVAMTQGVFPREWK
FT                 DAEVIGFLKPSKPPANPTSYRPISLLKTFGKIYERLMLTRLRAFMTTKGMP
FT                 IXEQFGFRAKHSCTHQVHRITEHILAKRQRGLNTGALFLDVAKAFDKVWHN
FT                 GLIYKLYEYGVPDRLVCIIRDFLSSRTFRYRVEGVCSSSHPVRAGVPQGSV
FT                 LGPVLFTLYTNDIPRVRGVELALFADDTCIFTSGRKPDAICRRLQTAANTL
FT                 GAWFRKWRIEINPTKSAALYFSRSKEPRLTSVKLLDSPIPWEDQVKYLGVI
FT                 LDTKLNFSAHVTRVRNRAAFILGRLSASINKKSKMSLRNKVTLYKSVVRPV
FT                 MTYASPVFAHISPKQIHRLQVIQNRFMRRATGAPWYMRNSDLHIDLDLPTI
FT                 AQHLKQASRRYFDSAVGHPNSLVVGAATYNPIALGKFRRDHRRPRHVLDFQ
FT                 DDATTIAQARIKQLRQTKRRSRCRLRQSFPRYGLIAGRFSPINDRSVAGVS
FT                 SATSSPSANAFRSGSNVRCINNYNNDQIAATDQVEVRPSRAPLNRNAKRVL
FT                 SDSPSRGPLSGTLVLSHSMERPPKRSKSSVASQSGNNNEVTARAEAPEGAL
FT                 EPSYS"
XX
SQ   Sequence 2535 BP; 702 A; 691 C; 563 G; 578 T; 1 other;
     catccccgat cagttaaata ccgaacaaga catgggtgtt gcgatcggct ctctaacaag        60
     tcatgtccaa aacgtcataa aggactgctc aaggcagatc ccagagatga ataaccatcg       120
     ttggtcacta caaccagaca ttagagactt attgaggcgc aagaacgcgg ctactcgtgc       180
     ccacgatatg tatcccaccg aattgaaccg aaaacagcta cgtaaactac agcgtgaggt       240
     aagaacacgc atagctgcat tcaggaacga aaggtgggat tcagatctta gtaatttaaa       300
     gccatcgcat ttagccttct ggaaactccc taaatcactt aaaggcgact cgtgccctac       360
     gatgccgcca ctctcacgtc caaatatgat accagccatg ctggacgacg agaaagccga       420
     atgcctagct gacagtctcg aggcccaatg ctcccctagt agcctaccgg tcgaccctga       480
     acacctccga aaggtggaca gagaggtcga gcggaggagt aacgtacccc ttctcgattc       540
     cattcctccg gtaactagcg atgaagttga ggaattaata aaaaacttac gcccccgcaa       600
     agcgcccggt tcagatggca tcaccaatag ggtggtcaaa ctatttcctg ctgctattat       660
     acagcttctc gtaaccatat ttaacgtagc aatgactcaa ggtgtctttc cccgcgagtg       720
     gaaggacgct gaagtcatag ggttcctcaa accatccaag ccgccggcaa atcccacatc       780
     atatcgtcca ataagtcttc tcaaaacctt tgggaagatt tatgaacgcc taatgttaac       840
     ccgcttacgt gcttttatga ccacgaaagg tatgcctatc nccgaacagt ttggatttcg       900
     cgccaaacat tcatgcactc atcaagtgca ccgcattacg gaacacatac tagctaaacg       960
     tcaacgcggc cttaacaccg gagctctctt tcttgacgta gcaaaagcgt tcgacaaagt      1020
     atggcacaac ggactcatat acaagctata tgagtacgga gtacccgatc gtctcgtatg      1080
     cataatacga gacttcctaa gtagtcgcac gtttcgctac cgcgtcgagg gagtttgctc      1140
     tagttcacat cccgttcgag ccggggtgcc ccaagggtcg gtgttagggc cagtcctatt      1200
     tacactatat accaacgata ttccgcgcgt acgcggtgtg gaactagcgt tatttgccga      1260
     tgacacctgc atttttacat caggccgtaa gcctgatgcc atatgccggc gtctacagac      1320
     tgcagcaaac acccttggtg cctggtttag gaaatggagg atcgaaatca atcctaccaa      1380
     aagcgcggct ctatactttt cacgcagcaa agaacctcgt ctcacatctg ttaagctttt      1440
     ggacagccca ataccctggg aagaccaagt taaatactta ggtgttatcc ttgacacaaa      1500
     actcaacttc tccgcacacg tgacccgggt caggaaccgc gcggctttca tcttaggtcg      1560
     tctttccgcg tcaattaata aaaagagcaa aatgtccctt cggaataagg tgacactcta      1620
     taaatcagta gtgcgtcccg tcatgacgta cgctagcccg gtattcgcgc acatctcgcc      1680
     gaaacaaata caccgacttc aggtgattca aaatagattc atgcgcagag ccacgggggc      1740
     cccgtggtac atgcgcaata gtgatcttca catcgacttg gacttaccca ccatagccca      1800
     acacctgaag caggcgtcgc gtcgttattt tgactctgcc gtcggtcatc ctaattcgtt      1860
     agttgtaggt gccgccacct acaacccaat cgcgctcggt aaatttcgac gtgatcatcg      1920
     cagacctagg cacgttcttg actttcaaga cgatgcaaca acaatcgctc aggctaggat      1980
     taaacaacta cgacagacaa aacgccgtag tcgctgtcga ctacggcaat cattcccgcg      2040
     atacggcctc atagcaggca ggttctctcc tatcaatgat agaagcgttg ctggagtttc      2100
     ttccgccact tcttctccca gcgctaacgc tttccgaagt ggtagtaatg ttagatgtat      2160
     taataattat aataatgatc agatagcagc aaccgatcaa gtcgaggttc ggccctctcg      2220
     ggcgcccttg aatcggaatg ctaaacgcgt attgagtgac agcccaagcc gaggtcccct      2280
     ctcggggacc cttgtgctta gtcactccat ggagcgacca ccgaagcgat ctaagagctc      2340
     ggtggcctcc caatccggta ataataacga agtaacggcc cgagccgagg ctcctgaggg      2400
     agccctcgag cctagttact cataaaagag gtttaggcta agcgccatct gcgctgggcc      2460
     acctcaagcc cggtgaatct gtaaatgcct cttcaaggca aacagtgaca aatcagtcac      2520
     aaaaaaaaaa aaaaa                                                       2535
//
ID   Jockey-1_PXu repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-198
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3077-3077 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated. ~94% identical to
CC   Jockey-1_PPo.
XX
SQ   Sequence 198 BP; 57 A; 58 C; 46 G; 37 T; 0 other;
     ctaagagctc ggtgacctcc caatccggta acaataacga agtaacagcc cgagccgagg        60
     ctcctgaggg agccctcgag tcttgttact cttaaacgag gttcaggcta agcgccatct       120
     gcgctcggcc acctcaagcc cggtgaagct gtaaatgcct cttcaaggca aacagtgact       180
     actcagtcac aaaaaaaa                                                     198
//
ID   Jockey-1_RPr repbase;    DNA;    INV; 2502 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2502
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3466-3466 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. 5'-end undetermined.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..2356
FT                 /product="Jockey-1_RPr_1p"
FT                 /translation="MSQYYEISTLTEPSSDHSPVLITLNINPFLSTPKPSL
FT                 ICGPVDWKKFQSKLEDSLNLQTVLKTSEDIDNAVQHFTTSIQNSIYQSASH
FT                 TRKQHNHTTNLPLYIRQLITDKRRARAVWQRSRYPSDKQIFNKLTHLLRTE
FT                 LQLLKNERFENYTLSLTTEDKSLWTASKRILRYKPVPSPLRRSDGSWATSD
FT                 GDKAALFSSHFLNAFTPHSDIIDSQFQQSLLQDLDTPLPLSLPPKPFSPSE
FT                 VQYVINHLSRKKAPGFDLITPTILCNLPKKAMVFLTSIYNAILRTTYFPVL
FT                 WKYSVIRPIPKPKKPHQHPSSYRPISLLPVLGKIFEKLLLKQILPILENSN
FT                 VIPDHQFGFRRNHSTIQQCHRVVDIIASSLEKKECCSGAFLDVQQAFDRVW
FT                 HTGLLWKLKNILPATFYLIIKSYLSDRYFRVQIGSSFSPLKHIDAGVPQGS
FT                 ILGPILYSIYTSDIPTDTNTTLLTYADDTALLSTNHDPVLAHRNLQSHLSS
FT                 LEQWFKRWAIKLNETKSQNITFTLRRITLPPVIYNLTPLPVVNVARYLGLY
FT                 LDRRLSWNPHTRLKRTELNRRYRLLKRLLDDRSKLSLDNKRLIYTSILKPI
FT                 WAYGIELWGSTKRSNLQRIQSLQSKILRTIVNAPFYVSNLTIHTDLNIPFV
FT                 TQVAKTRYRKLHFSLQSHINPLAKNLSSRTLPDNPTRRLKRQWPRDLLSSE
FT                 ESD"
XX
SQ   Sequence 2502 BP; 781 A; 675 C; 343 G; 701 T; 2 other;
     cagatccata tctcaacaac agtttgtttc atttttcaaa acwcttggtc ccagattcct        60
     gtccggtgga gactacaacg ccaagcacca acaatgggga tgccgcgcaa caaatccacg       120
     tggccatact ctactaaatg ttcttcwcgc ccgaaattac agcgtaatat caccggatca       180
     tcctacgtac tggcctacat ctctatctaa gctccctgat atcctagata tttttgtcac       240
     ttatcggatg tctcaatact atgaaatctc cactctaact gaaccttcct cagatcatag       300
     ccccgtactg attactctca acataaatcc ttttcttagt actcctaaac catctctgat       360
     atgtggcccg gtcgactgga agaaatttca atctaaatta gaggactcat taaatctaca       420
     aactgtactt aaaacaagtg aagacataga caacgctgta caacatttca caacatcaat       480
     acaaaattcc atttatcaat ctgcatcaca taccagaaaa caacataatc acactactaa       540
     tttaccacta tacataagac aactcatcac agataagaga cgagcacgag ccgtatggca       600
     gcgctcccgc tatccctcag acaaacaaat ctttaacaaa cttactcatc tactcaggac       660
     tgaactacag ctcttaaaaa atgaacgttt tgaaaactat acactatcac tgactaccga       720
     agacaaatct ctctggaccg cttcaaaaag aatcctccgc tacaaaccag taccctcccc       780
     acttcgacgt agcgatggat catgggctac ttccgatggt gataaagctg ctctcttttc       840
     ttctcatttt ttaaatgcat tcactccaca ttctgacatt atcgactcac aattccaaca       900
     atctctccta caagatctgg acacacctct tcctctctca ctcccaccca aaccattttc       960
     accttctgag gttcagtacg tcataaatca tctttcacgt aagaaagcgc ctggatttga      1020
     tctcattact ccaaccattc tctgcaatct tcccaaaaaa gccatggtat ttctgacttc      1080
     catatacaac gcaattctcc gaacaaccta cttccccgtc ttgtggaagt attccgtaat      1140
     ccgtcctatc ccaaaaccta aaaaacctca tcaacatcct tcgtcttacc gtccaattag      1200
     tttattacct gtactaggaa aaattttcga aaaacttctt ctcaaacaaa tccttcctat      1260
     cctcgaaaac tctaatgtga tcccagatca tcagtttgga tttagacgta accactctac      1320
     tattcagcaa tgtcatcgag tagtggacat aattgcatcc tctcttgaaa agaaagaatg      1380
     ttgttcaggg gctttccttg atgtacagca ggccttcgat agagtatggc acactggcct      1440
     cttgtggaag cttaaaaata ttttacctgc cacgttttat ttaatcataa aatcttactt      1500
     gtccgacaga tacttcagag tgcaaatagg atcttctttc tccccactta aacatatcga      1560
     cgctggagtt ccacagggca gcattctggg tcctattctc tactccattt acacttcaga      1620
     cataccaaca gatactaaca ctacacttct cacatacgca gatgacaccg ccttactgtc      1680
     cactaatcat gatcctgtac ttgctcacag aaatctgcag tcacatctct cctccttaga      1740
     acagtggttc aagagatggg ctattaaact taatgaaacc aagtctcaaa atatcacctt      1800
     cactcttcgt cgcattactc ttcctccagt catctataac ctaacacctc taccagtagt      1860
     aaacgttgcc cgctaccttg ggctttactt agaccgaaga ctttcttgga acccccacac      1920
     tagacttaaa agaacagaac tgaacagacg ctatcgacta cttaaaagac tcttagacga      1980
     cagatcaaaa ctctctctgg acaacaaaag actaatttat acatctattt taaaacccat      2040
     ctgggcgtat ggaatagagc tgtggggttc aaccaaacgc tccaatctcc aaaggattca      2100
     atctctacaa tctaaaattc ttcgaactat tgtaaacgct cctttttatg tctccaacct      2160
     gactatacac actgacctta acattccttt tgtcacacaa gttgctaaaa caagatacag      2220
     aaaactccac ttcagcctgc aatctcatat aaatcctcta gctaaaaatc tttcttctag      2280
     aactcttcct gacaacccga caagacgcct taagagacag tggcctcgtg atctcctctc      2340
     aagtgaagag agcgactaat agcctatttt ggagtgttac cactgggtaa cttctccact      2400
     cgtattcttc tgttattcgt tgttaccgtt atcactgtta cttatagcgc caacgcgctg      2460
     attgtagcaa aaataaacgc aaaaaaaaaa aaaaaaaaaa aa                         2502
//
ID   Jockey-1_TCa repbase;    DNA;    INV; 3076 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   05-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   Jockey-type retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3076
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 739-739 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           365..2746
FT                 /product="Jockey-1_TCa_1p"
FT                 /translation="MGANQLIQNSFQVAFWNANGLRAARDELEEFVDRLQL
FT                 DIVLVCETKLQPQTTDPKIRGFTLHRADRGIGPGGGTAIFVSNRIKHSVLA
FT                 TPDLRNMEAVGINVATANGPLRLFACYNRPQIPILEEDLQTLFDGNTPTIA
FT                 AGDFNAKHINWGSRRSNRNGNILNGFTDQHLDISVMAPVEPTFYRNSDGXA
FT                 DILDVAIVKNVVHQVRLTAINDLSSDHNPVLMQIGNEANDPIVCRYTSVDW
FT                 RKFTKHLVNNFGTIPPIRSTEEIDEAVQTFETKIRDAITPPPGNXELGPKT
FT                 GDXITGPHRRSTRADXXHVEEIEDHVESIATEDPDEPLTPTTPEEVSGVIR
FT                 KLKKRKASGPDEISNRALKNLPLKVIVELTGILNAMFSFRYFPQRWKMATV
FT                 IFIPKPGKDPKFPQNHRPISLLSAVGKVAERLIRSRLLQLTQERHIVPDEQ
FT                 FGFRSNHSTTDQLLRVVEHASISIERKQVTGAVFLDVAKAFDAVWHDGLIY
FT                 KLHQTGIPLAMVQMIRSFLDGRRFQVRINNSVSDPQDLEAGVPQGSVLSPL
FT                 LYSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWC
FT                 RRWLINVNPDKSRALLLARRRVSPDGFVRMFNADIPWSDQVKYLGVILDKK
FT                 LSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNKLLLYKSVIRPTMTYA
FT                 SVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREAKMPTMEEF
FT                 FRETAERAFSKAEAHPNPLVREAVDYDENGPSRCKRPRMALL*"
XX
SQ   Sequence 3076 BP; 819 A; 896 C; 737 G; 615 T; 9 other;
     aagtgcgggg aagcacatga cacaaaagtg tgcacgaagg agagcaagga gcctcccaag        60
     tgtgccaatt gtaatggccc ccacacggcc aattacagag gctgtccgca gttccccaag       120
     ctgcagaaaa ccgccacccc caggacaacc gcccccgcca aggtcgccgc ccccaaggca       180
     gcagccccca aaaaggccgc cgctcccaag ccaacagccg cccccaaggt cgtcgctccc       240
     aaggcaaacc ccaccgccac caaaggcaaa ggaggcgcca aaaagaccgc tcaagtcaaa       300
     cccaacgcca ccaatggcaa aggagtaaaa ctctcagcct tcgtcgctct tctttgaatc       360
     gttgatgggt gcgaatcaac tgatccaaaa ttcttttcag gtggcgttct ggaacgccaa       420
     tggccttcga gcggcccggg acgagctcga agaattcgtc gacaggctgc aacttgacat       480
     cgtacttgtg tgcgaaacaa agttgcaacc tcaaacgacg gacccaaaaa ttcggggttt       540
     cactctccac agggcggaca gagggatcgg cccaggagga ggaacggcaa tttttgtaag       600
     taacagaatt aaacattctg ttctagcaac acccgatctt cgcaacatgg aagccgtggg       660
     catcaacgta gccactgcaa atgggcccct gcgcctgttt gcatgctaca accgaccaca       720
     aattccaatt ctcgaagagg acctgcagac acttttcgac ggcaacacac caacgatcgc       780
     tgctggtgat ttcaacgcca agcacatcaa ctggggaagc cgccgttcga acaggaacgg       840
     aaacatcctc aacggcttca cggatcaaca cctggacatc tccgtcatgg ctccggtaga       900
     acccacgttc taccgaaact cggacggkrc tgcagacatc cttgacgttg caatcgtcaa       960
     aaacgtcgtg caccaggttc ggctgacggc aataaacgac ctctcttcgg atcataaccc      1020
     cgtyctgatg caaatcggga acgaggcaaa cgatccgatt gtatgtcgtt atacctcagt      1080
     ggattggagg aagttcacca agcacctggt gaacaacttc ggaacaatcc caccgatcag      1140
     atccacagaa gaaatcgacg aggcggtcca aaccttcgag acgaagatcc gggacgccat      1200
     cactccgcca ccagggaacg ragaactcgg ccccaagact ggagattyca taaccggacc      1260
     tcacagaaga agcactmgag ctgacckgra ccacgtcgaa gagatcgagg aycacgtgga      1320
     atccatcgcc accgaggacc cagatgaacc cctgaccccg acaacccccg aagaagtttc      1380
     cggagtgatt cggaaactga agaaacggaa ggcatccgga ccagacgaaa tcagcaacag      1440
     ggctctcaag aacctcccgc tgaaagtcat cgtcgaactg acaggtattt taaatgcaat      1500
     gttcagtttc agatattttc cacagcgttg gaaaatggca acggtcattt tcatcccgaa      1560
     accggggaag gacccaaagt ttccccagaa ccacaggcca atcagcttgc tgtcggctgt      1620
     gggaaaggtc gcagaacgtc tcatccgctc ccgcctcctc cagctcaccc aggagcggca      1680
     catcgtcccc gacgaacaat tcggctttcg gtcgaatcat tcaacaactg atcagctact      1740
     acgagtcgta gagcacgctt ccatcagtat cgagcgcaag caagttactg gtgcagtgtt      1800
     tctcgacgtg gcaaaagcat tcgatgcggt ttggcatgat gggcttattt ataagctcca      1860
     tcagactggc attccgctcg caatggttca aatgatcaga tcgtttctcg atggacgccg      1920
     tttccaggtg agaatcaata actctgtttc agatccccag gacctggaag ccggagtccc      1980
     tcagggctcc gttctttcac cccttcttta ctccattttc acccacgaca tcccaaaaac      2040
     tgaccgtacg acactggcga tatacgcaga tgacacagcg attctcacca gatcgaagca      2100
     accctacatg gctacccgct acttgcagga gtctgtggaa cgcatcgaaa actggtgtcg      2160
     caggtggctc ataaacgtca accccgacaa aagccgagcg cttttgttgg cacgacgtag      2220
     agtcagccct gatgggtttg ttcgaatgtt caacgcggat attccctggt ctgaccaggt      2280
     caaatatctc ggggtcattc tggacaaaaa actctccttc ggcccacatc ttgactacgc      2340
     actcgcgaag ggcaagatgg ccacgggaat gctgagatct ctcgtatgtc ggcggagcgc      2400
     gttgtcaatt gacaacaagc tcttgttgta caaatcagtg atccgaccta ccatgactta      2460
     tgcttctgtg gcttgggcgt tcgcgccctg taagactcgg atgcataagt tacaaacttt      2520
     ccaaaacaaa tttctccgtc aagcattcaa cgccccgtgg tttgttcgca acaaccaatt      2580
     gcaccgagag gcgaagatgc cgacgatgga ggaattcttc cgtgagaccg ccgagcgagc      2640
     cttttcgaag gcggaagccc acccgaaccc cctggtccga gaggccgttg actacgacga      2700
     aaacggtccg tccagatgca agaggccaag gatggctctc ttgtgatcga aaatgccttc      2760
     tcactcagat cttccgaatc tggtaagcat caaatgtcat tgccacattt atctgtcgca      2820
     gctcttttca gattccatca aatggatcac ttcgggggaa tccccggagc gccctcttct      2880
     tttcttctgg cgccatgcaa accggcatgg ctgcccagcg tgcgttcagg gatgaaggac      2940
     caatggttcc gatccctaag gtgacgcgag gggttttagt gggtattgtc ggcttgcaca      3000
     tttaccgacc gagtcccaca taaccagacc tagtctggta tgcgtaaaag catttcccct      3060
     ctccaaaaaa aaaaaa                                                      3076
//
ID   Jockey-2B_LMi repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.11, Created)
DT   04-AUG-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-723
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3105-3105 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 723 BP; 133 A; 245 C; 115 G; 228 T; 2 other;
     cctctgccac accgatacca gcatgtccct ccctccctca ccttcacact ctccacatcc        60
     tctcccaggg aactttcgcc acctccctct cccggatgac gccctcctcc cgatatctac       120
     ccatcctatc agccctaatc cctctcctcc ccatatatta cgtgccccct tctttccctc       180
     ccccacttgg atctcccttc ccccctcaga gttcttacgc cttccttccc tacgcctgcc       240
     ccctcccatc ccgccccgcg cctcccctcc ttcccctctc cctctgcggg gtctgcatag       300
     tgttccagtt tttaatgtgg tgcttcgtca gtgtgtctag tgtctgtgca tcctatggtg       360
     tcagtgtcag tgtatgttat tttaacagtg caaccgccga caacggcaaa acattgtgtt       420
     gcatacatgt gttttattag tgtcttcgtc mgtgtcaccg cctcggactt ttactcagac       480
     atttatgtat tttagccacc gtggcaccgt tttaaaacta ccatcatgtg tcttgctaat       540
     ctatgtgatt ttattaagtc tcacattcat ctccgttttt ataacttcca ttctcctgtt       600
     ttatcaccgt tttattktgt atgtatacct cttgccaatt tgtgtaaacg ctcggctgaa       660
     gagtggcata caggccgctg ccagcctgcc ccatctgggg cttgaaaata acaataaaga       720
     aaa                                                                     723
//
ID   Jockey-2_BTa repbase;    DNA;    INV; 5347 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5347
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 704-704 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..2042
FT                 /product="Jockey-2_BTa_1p"
FT                 /translation="MAGVGNENPKEDLSSDRNKKINQLLNTDITPALKSAN
FT                 LDESIKIFMANSQNLVKTLFEENNTLASENSDINAKFKTLMDKFTETEQQN
FT                 NSVITNLQSQINELKQSQNSNVSKSSNSVSNISNDTNTRSKDVSSKSVKNI
FT                 TKNNSRKDSGQMKLTQFTGIKTKDPQSNSNLNASVSTSNKFDALNSEQLIQ
FT                 DEEMVTLENDDESNKDDSLSEDYNSDPEFRAKRQVYKQQRKKRKRGNSDNQ
FT                 DNQSSSSTKQPNSEDKSNSNTSTVSSNKTKILPPPPIKIIGLKTYEEVKNI
FT                 LITASPEEEYSMRFIGSETWKVNPSSEETFRKISENLNLNGVQWYSHANKN
FT                 TRNIKVICKGLPPSIPEEEIVQDLLDKNFKIKNAVCLKKRIEKTKQKSISN
FT                 GEPKNQDKSNNNDNTTPKKEIKEFELIKIPVHQLDFDFSESIEKIHNIKSI
FT                 AHTMVKIEPVKINPAIVPQCKRCCGFQHTANFCAKTPRCVKCAGKHLSADC
FT                 VHKGRISNPKCANCGAIGHPASYRGCPFAKEFQNIRKQQLKAKNNPEKNGK
FT                 NFPQLGTKTLKTSKPKPLDKSFAQAVSGNKNNESVPQNQADIISTLLKTIE
FT                 ALNVQIQLLNEKIGRLEARSNK"
FT   CDS           2073..4985
FT                 /product="Jockey-2_BTa_2p"
FT                 /translation="MYNSNENVSLSFFQNNDDSLFSEQNDEVIDYDDIVRL
FT                 HSRPQSTHISSSLNFMAWNCGGLSRVKAEEFNVTLRDFSVDIALLSETWFT
FT                 KNDFKRYFVGYKMYNALHPENKRRGGSSILIKENIKHNLIKIIETACFQSA
FT                 VISIDTEIGEFNLASIYTPPKSVLSSEDYSNFLSELGPTFLVAGDWNAKDP
FT                 RWGSRITNPKGKSLLEAANLSDCQFISPGKPTNYPYDPKHNPDIIDFFVFK
FT                 NLNLIDKTLCDILPPPLSGHAKIILNIFTNPLIVNRPPTICSKRTNWDKFR
FT                 EDLDKSIDNSVPVVSTADIDRETELLVEQIKNCAINNTPVATNNPRPYNIP
FT                 KELLNLIRKKRKAHRKAANSRIPEDKSHFNRLNKIVKKRTQEFLNLKFQNF
FT                 IESLSPTADKNYSLWASTKYLKRPKQLKFPIKKKDGSWASSDAEKAEVLAD
FT                 HFENAFKPHSDINTEISSDSEESFTDSSVSDPQTQGEVSTLKPRKKVKKIP
FT                 PIKIKTISPSELLKEIKGKIKVKKAPGYDKISGLILKNLPRKALMKLVSIF
FT                 NAVLRCKYIPSQWKIAEIFVLLKPDKPPAEAASYRPISLLPVIGKLFERLY
FT                 IKRLNEIVKDKNLIIDAQFGFRAQHSTVDQLHRVTKFIEDSLENGEFCVAV
FT                 FLDVAQAFDRVWHERLVGKLYKMLPCNHVELLSSFLSGRQFRVRYENSISS
FT                 FRRIEAGVPQGSCLSPLLYSLFTTDIPQSGRGGKLGIYADDTLVLSSSRSY
FT                 REARQNAQLHLNKINHWTEKDKTKLNATKSVEVVFTNRPFVRIPLRLGETE
FT                 IPNDKTAKYLGLHLDSRLRWGTHIKKKVAQLRLKFSNMQWLLGRKSRLSLQ
FT                 LKLLLYKSMLRPVWSYGCQLWGCAAKSNLDKIEVMQMKILRSIVKARWYER
FT                 NADIRADLNIDSVEDYITKMYSAYEMRLHRHPNQEALALLEWDRCGRRLKR
FT                 RKPYELGIQGFSKFFP"
XX
SQ   Sequence 5347 BP; 1878 A; 1056 C; 935 G; 1478 T; 0 other;
     cagtgctgtc tgataagcta aaccgtgcag tcgcatacag ttcagtgctc ccttatcaaa        60
     ctgataatct ctctcttttg aaagtgccta tgctgccgtg gcagcctacg tttcttttct       120
     aagttttaac ctaaaaacca aatctgtaag ttaaatcttt ctttttatac actacccctg       180
     caatggcggg ggtaggtaat gaaaatccta aagaggatct atcctcggat agaaacaaaa       240
     agataaatca actccttaat acggatataa ccccagcctt aaaaagtgcg aacttggacg       300
     aatcaatcaa aatttttatg gcaaattctc aaaatttggt gaaaactcta tttgaagaaa       360
     ataatacact cgcaagtgaa aatagtgata taaacgctaa atttaaaact cttatggaca       420
     agttcacaga aactgaacaa caaaataatt cagtgattac taacttgcaa tctcaaatca       480
     acgagctcaa acagtctcaa aatagtaatg taagtaaatc atctaattca gtgtctaaca       540
     tttctaatga taccaataca cgctccaaag atgtaagttc aaagtcagtg aaaaatatta       600
     ctaaaaataa ttcccgtaaa gactcagggc aaatgaaact aacccaattt accggaatta       660
     aaacaaagga tcctcaatcc aattcaaatc taaatgcctc agtgtcaaca agcaacaagt       720
     ttgatgcgct caactcggaa caattgatcc aagacgaaga aatggtcacc ttagaaaatg       780
     atgatgaaag caacaaggac gattctctct cggaggacta caattctgat ccagaatttc       840
     gtgctaaacg tcaagtgtat aaacaacaaa ggaagaagag gaaaagagga aattccgata       900
     atcaggacaa tcaatcttca tcttctacca agcaacctaa ctcagaggat aagtctaatt       960
     caaacacttc tacagtttct agcaataaaa ctaaaatctt accacctcct cctataaaaa      1020
     ttattggttt aaaaacttac gaggaagtta aaaatattct tattacagcc tctcctgagg      1080
     aagagtactc tatgcgattc attggaagtg aaacgtggaa ggtaaatcct tcttcagagg      1140
     agacctttcg aaaaatttca gaaaatttga atttaaatgg tgttcaatgg tattcgcatg      1200
     cgaataagaa taccagaaat ataaaagtta tctgcaaagg tcttccaccc tctatacctg      1260
     aggaagaaat tgttcaagac cttctagata aaaatttcaa aattaaaaat gcagtatgtt      1320
     tgaaaaaacg catagaaaaa actaaacaaa aatctatctc aaatggagaa cctaaaaatc      1380
     aagataaatc aaacaacaat gataacacca cccctaaaaa agagataaaa gaattcgaac      1440
     tgattaaaat acccgtgcat cagttggact ttgatttttc agaatctatt gaaaagattc      1500
     acaatattaa gtctatagcc catacaatgg taaaaattga gccagttaaa attaaccctg      1560
     ctatagtgcc tcaatgcaaa cggtgttgcg gtttccaaca caccgcaaac ttttgtgcta      1620
     aaacccctcg atgtgtaaaa tgtgctggta aacatttatc agctgattgt gtccacaaag      1680
     gcagaatctc taatccaaag tgtgccaact gcggtgctat tggacaccca gccagctacc      1740
     ggggttgtcc cttcgcaaag gagtttcaaa atattagaaa acaacagctt aaagcaaaaa      1800
     ataaccccga aaaaaacggg aaaaatttcc ctcaactagg gactaaaaca cttaagacct      1860
     caaagccaaa acctcttgat aagtcttttg ctcaagcggt gtctggcaat aaaaataatg      1920
     agtccgttcc acaaaatcaa gctgatatca tcagcacact tttaaaaaca atcgaggcac      1980
     ttaatgtgca aattcaactt ctgaatgaga aaatcggtcg tttggaagct cgttccaaca      2040
     aataaaataa atcatatttc tgtatctttt ttatgtataa ttctaatgaa aatgtctctt      2100
     tgtctttttt tcaaaataat gatgactctc ttttttctga gcagaatgat gaagtcattg      2160
     attacgatga catagtgcgg ctacactctc gcccacaatc tacacacatc tcatcatcat      2220
     taaactttat ggcatggaac tgtggcggcc tgtcgcgggt gaaggccgag gaattcaatg      2280
     tcacgctaag ggatttcagt gttgatatag ccctcctgtc ggagacctgg ttcactaaga      2340
     acgatttcaa aaggtatttc gtaggttata aaatgtataa cgccttacat ccagaaaata      2400
     aaagacgagg cgggtcctca atattaatta aagaaaatat aaagcataat ctgataaaaa      2460
     tcattgaaac tgcatgtttt cagagtgcag taattagtat agacacagaa attggtgaat      2520
     tcaatttagc ttctatttac actccaccca aatctgtact atcctcagaa gattattcta      2580
     acttcttaag tgaactaggc cccacatttt tggtagcagg cgactggaac gccaaggacc      2640
     ctcgttgggg atccagaatt acaaacccca aaggaaaatc cctgttggaa gcggctaatt      2700
     tatctgattg ccaatttatt tctccaggta aaccaacaaa ctacccctac gaccctaagc      2760
     acaatccaga cattattgac ttttttgtct ttaaaaattt aaatttaatt gataaaactt      2820
     tatgtgatat tttaccacca cctttaagcg gacatgctaa aattattctt aatatattca      2880
     caaatcctct catagttaac cgtcctccca ctatttgttc caagagaaca aactgggaca      2940
     aatttagaga ggatcttgat aaaagtatag ataatagcgt tccagtcgtc tctacagcgg      3000
     atatagatag ggagactgag ctgttagtgg aacaaattaa aaattgtgct ataaacaata      3060
     ctcctgttgc gactaataat cctcgcccat ataatattcc gaaagaactt ctgaacttaa      3120
     ttaggaaaaa aagaaaagct catagaaagg cagctaactc tagaattcca gaggacaaga      3180
     gccacttcaa tcgcttaaat aaaattgtta aaaaacgcac tcaagaattc cttaatctta      3240
     aattccaaaa ttttatagaa tctctctctc ctacagctga caaaaattat tctctgtggg      3300
     catccaccaa atacttgaaa cgtccaaaac aattaaaatt ccccattaag aaaaaagatg      3360
     gttcatgggc aagctctgat gctgaaaaag cagaagtctt agcggatcac ttcgaaaacg      3420
     cctttaaacc tcatagtgac attaatactg aaatctcctc tgactcggag gaatcattca      3480
     ctgacagctc agtctccgac ccgcaaacac agggggaggt atcaacactg aaaccccgaa      3540
     aaaaggtcaa gaaaatacct ccaatcaaga taaagaccat ttctccctca gaacttttga      3600
     aggaaatcaa gggaaaaatc aaagttaaaa aagcccctgg gtatgataaa atctcaggat      3660
     tgattctaaa aaatcttcct agaaaagctc tcatgaaact ggtatcaatt tttaatgcag      3720
     ttctacgatg taagtatatt ccatcacagt ggaaaatcgc agaaattttt gtattattaa      3780
     aacccgataa acccccagca gaagcagcct cttatagacc aatctcctta ctacctgtga      3840
     ttggcaaact ttttgaaagg ctgtacataa aaagactgaa tgaaatagta aaagacaaaa      3900
     atttaatcat agacgcccaa tttggcttta gggctcaaca ttccactgtt gaccagcttc      3960
     atagagtcac aaaatttatt gaagattccc ttgaaaacgg ggagttttgt gtggcggttt      4020
     ttcttgacgt agcgcaggct tttgatcgtg tttggcatga gcgtctcgtc ggaaagctgt      4080
     ataaaatgct cccttgcaat catgtggagc tcctttcctc tttcctgtcg gggagacagt      4140
     ttagagtacg ttatgaaaac tcaatctcaa gttttagacg gattgaggcg ggagttccgc      4200
     agggttcctg tctttctcct cttctctact ctctctttac tacagacatc ccacagtctg      4260
     ggaggggggg aaagttgggc atttacgcag acgatactct cgtgttatct tcgtccagaa      4320
     gttacaggga ggcacgacaa aatgcacaac tgcacttaaa taagatcaat cattggacag      4380
     aaaaagataa aacaaaattg aatgcgacaa aatcggtgga ggtggtattt acaaatagac      4440
     cttttgttcg tattcctctt cgattgggag aaactgaaat ccctaatgat aaaactgcaa      4500
     aatatctcgg cctacatctg gattccaggc tcagatgggg tacccatatt aagaaaaaag      4560
     tcgctcaact gcgactaaaa ttctcaaata tgcagtggct cttgggtcgc aaatctcggc      4620
     tttcactaca actaaagctg ctcctctaca agtcaatgtt gaggccggtt tggagttatg      4680
     gttgccaatt gtggggttgt gcagccaagt caaatctaga taaaatcgaa gtcatgcaaa      4740
     tgaagattct cagaagtatt gttaaagctc gctggtatga gaggaacgca gatattcgcg      4800
     ctgacctcaa tattgactct gtggaggatt acatcaccaa gatgtactct gcatatgaaa      4860
     tgagattaca tcggcacccc aaccaagaag cgcttgcgct cttggaatgg gaccggtgcg      4920
     gtcgcaggtt gaaaagacgt aaaccctatg agcttggaat tcagggtttt tctaaatttt      4980
     tcccttaaat aagtgtgcct ccccgtacct tcggacggat caggggttcc tgggtgtttg      5040
     accggtgacg gttgaccaca gtcttcacga taaaaacaaa gacttttacg attaaaacaa      5100
     aaagacattt ttatttcaga aataattatg tacttataac ctcctcaata ccagaggttg      5160
     taactattta tatttaacag ggataaaatc aatttgttta ttttgttgtg tatagtttaa      5220
     atgtatataa tattaagttt ttacttaaag ttaaaattag cttaaaaaga caatttaatt      5280
     tgtctgtaag cattcttttg tactgaattt atgtattgta caaataaaaa aaaaaaaaaa      5340
     aaaaaaa                                                                5347
//
ID   Jockey-2_CQ repbase;    DNA;    INV; 4403 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4403
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 113-113 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           229..1512
FT                 /product="Jockey-2_CQ_1p"
FT                 /translation="MTPPSSRRHRRNSTGGISSISDQLNEHRPLTQPGGSS
FT                 GGFPTANQFEMLDFDISGDEQEDVNNGGGGEILPAGDGAASGNAAGKVVKN
FT                 VPPAPAKVRCPPIFVHGSSVPALNRLMSTTQLGADDYHLRVNKGYIQIRVS
FT                 TKSHFTSVVSTLKQANVQFYTHGTSDETPVKIVLSGLPVFPVEDVRRELED
FT                 VFLRPTSVRQMGKSKHGDYALYLLQFEKGTVKLQELQQIKALFNVIVRWRH
FT                 YSKKKSDVVQCFRCQQYGHGMRNCHLEAKCVKCGERHQTTACALPARADVV
FT                 VNDDRSQIRCANCNQNHTANYKGCPTRLKYLQDLKAKKKTSPAGRSNLPKV
FT                 SAVPAPAPRPPGGDLSQLLGSIANPGVSYSQAVQGQPESSTLFTVEEFMCL
FT                 ASELFTRLSKCQSKAMQFLALSELIIKFVYNGQP"
FT   CDS           1502..4174
FT                 /product="Jockey-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANLSSLKVMNWNCRSIRNKVVEFFHFLETHQIDIAA
FT                 ITETWLQLNNSMYHEHYTIVRADRESTEAARGGGVALLVRNGIDFSKLETS
FT                 TRAIESVGITVKTDPAPVNIFAVYYPGSPRRATLSQLRRDIRQLSSIDGPF
FT                 FLVGDLNARHRMWNCARANKAGQILHQEYESKDIYIHAPDTPTRCPAGRGR
FT                 PSTLDLVISNNQVQMSKPITHVELSSDHLPVTFTIDVDVPVAPAGRLVRCF
FT                 DRANWSTFARSIEREVDLNASWINTLDRSEKIDDAIDKFTAILKAAEEAAV
FT                 PSRRILPQKKDIPDELKLLIRLRNVRRRQFIRRRDPLIGAVVTHLNNVIST
FT                 KSAEHRYKNFGSLLRTLDNGSNKFWKLTRNLRNTVKYSPPLNVNGDLVASP
FT                 SAKAEALASAFAAAHNNEQPGDPETSAAVENALGHIRATTPPVPPAALVKP
FT                 KEVKAIIRTLKNRKSPGQDGIRNTCLKQLPRKGLVVLTKIFNACLALGYFP
FT                 ARWKHANVIAIPKANKDITNPGNYRPISLLSSLSKLLERVILARINRHLET
FT                 EQLIPHEQFGFKPGHSTVHQLARISEMVKRGFLAGKSTGMILLDVEKAYDS
FT                 VWQDAVVYKLFRSNLQPFLVKIVESFLTNRSFTVTVNGERSSVHNIPFGVP
FT                 QGSVLSPTLYNILTSDVPMIDGVSYAFFADDTAYLASDKDPKIVVTHLQAA
FT                 QNNLEEFQRKWRIKLNAGKTQSIFFTRRRAARHLPRRSISVNGQPATWDDE
FT                 VRYLGVVHDKKLKYDKHVNNIIEKVDRSTKALYSLLNRRSKLSIKNKSLVV
FT                 KCIIRPMLTYAAAVWGNCAKSHRKRLQVKQNKLLKMVHNLDPWYPTDDLHE
FT                 LAGVDTIDASIEKATRTFRTSCGMSTNPLIEALLRQQL"
XX
SQ   Sequence 4403 BP; 1078 A; 1305 C; 1168 G; 850 T; 2 other;
     tcattcgagc tgtcaccgtc gacgcgtaaa catcgtcgtc aaattctagc tctcgcgaaa        60
     agttaattta ttggtgctcc cggtgtgttc accagcaccc tggggaaacg aaagcagccc       120
     aagccgccgc cgctgcccgg cgaaggcgat tccggccggg acagtgcatc gcagatcctg       180
     cagcgggtgg actacaagaa ggcccgcaaa cagcagaagg aaaaggtgat gacgccgcca       240
     tcttcgagac gccaccgaag aaattcgacc ggcggtatct catcgatttc ggaccagctg       300
     aacgaacatc ggccactgac ccaacccggg gggtcctccg ggggattccc gacggcgaat       360
     cagttcgaga tgctggactt cgacatctcc ggcgacgagc aggaggatgt caacaatggc       420
     ggcggtggtg agattttgcc cgctggtgat ggtgctgcta gtggtaatgc cgccggtaaa       480
     gttgtgaaaa acgtgcctcc cgcgcccgcc aaggtgagat gtccgccaat cttcgtccac       540
     ggttccagtg tcccagcgct taaccgactg atgtcaacaa cccagctggg cgccgacgat       600
     taccacctgc gggtaaacaa agggtacatc cagatcaggg tgtcgactaa atcccacttt       660
     acttctgtgg tgagtacttt gaagcaggca aatgtccagt tctacaccca cgggaccagt       720
     gacgaaaccc cggtgaaaat cgtcctttcc ggattaccag tgtttccggt agaagacgtc       780
     aggcgggaac tcgaagatgt gtttcttcgt cccacaagtg tgcgccagat ggggaaatcg       840
     aagcacggcg attacgcgct gtacctgctg cagtttgaga agggaaccgt gaaacttcag       900
     gagctgcaac aaatcaaggc gctgttcaac gtgatcgtcc gttggaggca ctactccaag       960
     aagaagtcgg acgtcgtcca gtgtttccgg tgccagcaat acggccacgg gatgagaaac      1020
     tgccatctgg aggccaagtg cgtgaagtgt ggtgagcgcc accagacgac cgcatgcgca      1080
     ctccccgcgc gtgccgacgt tgtggtcaac gacgaccgct cgcaaatccg ttgtgctaac      1140
     tgcaaccaaa accacacagc gaactacaag ggttgcccca cccgcctcaa gtacctgcag      1200
     gacttgaagg ccaagaagaa gacgagtccc gccggcagaa gcaaccttcc gaaggtgtct      1260
     gcagttcctg cgcctgctcc caggccaccg ggtggtgact tgagccagct gctcggcagc      1320
     atcgcgaatc ctggggtctc gtactcgcaa gccgtgcagg gccagcccga gtcgtcaacc      1380
     ttgttcaccg tcgaggagtt catgtgccta gccagtgaac tcttcactag gctttcgaag      1440
     tgccaatcga aggccatgca attcctcgcc ctcagcgagc tcatcatcaa atttgtttat      1500
     aatggccaac cttagctcgc tgaaggtgat gaattggaac tgccgttcca tccgcaacaa      1560
     ggttgtggaa tttttccact tccttgaaac tcaccagatt gatatcgctg caatcacaga      1620
     gacctggctg cagctcaaca actcgatgta tcatgagcac tacactattg tgcgtgcgga      1680
     tcgcgaatcg acggaggccg cccggggggg aggagtggca cttctggtgc gaaacggcat      1740
     cgacttctcc aagctggaaa cctcgacccg tgcaatcgag tctgttggga tcacagtcaa      1800
     gacggacccg gcaccagtta acatctttgc cgtctactac cccggttctc ctcgcagggc      1860
     aacgctcagc cagcttcgac gcgatatccg ccagctcagc agtatcgatg ggccattctt      1920
     cctggtgggt gacctgaacg cgcgacatag gatgtggaac tgtgccaggg ccaacaaagc      1980
     agggcaaatc ctgcaccaag agtacgagtc caaggacatc tacatacacg ctccggatac      2040
     tcccacccgc tgccccgctg gacgagggag gccttccacg ttggacctgg tcatctcaaa      2100
     caaccaggtg cagatgtcga agccgataac gcacgttgaa ctgtcgtcgg accatctgcc      2160
     ggtcaccttt acgatcgacg ttgatgttcc agtcgccccg gctggaagac tcgtccgatg      2220
     cttcgacaga gcgaactgga gcacttttgc tcgctcgatc gagcgggagg tcgaccttaa      2280
     cgctagctgg atcaacactc tagatcgctc ggagaaaatc gacgacgcca tcgacaagtt      2340
     caccgccatc ctcaaagctg ctgaggaagc cgctgtccct tcgcgtagga tcctacctca      2400
     gaagaaggac attcccgacg agctgaagct gctaatccgg ctgaggaacg tgcggcgtag      2460
     acagttcatc cgaagacggg acccgctcat cggagcggtg gtgacccacc tgaacaacgt      2520
     catcagcacc aaaagcgccg aacaccgcta caaaaacttc ggctccttgc taaggacgct      2580
     ggacaacggc agcaacaagt tctggaagct tacccgcaac ctccggaaca cggtcaagta      2640
     cagccccccg ctgaacgtca acggagacct cgtagcgagc ccttcagcga aagccgaagc      2700
     gctcgcgagt gcgttcgccg ctgcccacaa caacgagcaa ccaggtgatc ccgaaacatc      2760
     ggccgctgtg gagaacgcgc ttggccacat ccgagcgaca actcctcccg tgcctccggc      2820
     cgcccttgtt aagccgaaag aggtcaaggc gatcatccgc acgctcaaaa accggaagtc      2880
     tccagggcaa gacggaatcc ggaatacgtg cctcaagcag ctgccaagaa aagggttggt      2940
     cgtcctgacc aaaatcttca acgcttgcct ggccttgggc tactttccgg ctcgctggaa      3000
     gcacgcaaac gtgatcgcca tcccaaaggc gaacaaggac ataaccaatc caggtaacta      3060
     ccgcccgatc agccttttga gcagcctgag caaactcctg gaacgggtga tcctcgcccg      3120
     gataaaccgt cacctggaga cggagcaact catcccacac gagcagttcg gcttcaagcc      3180
     ggggcactca acggtgcacc aactcgcccg tatctcggag atggtgaagc gcggcttcct      3240
     ggcggggaaa tcgaccggca tgatccttct cgacgtcgaa aaggcctacg actccgtgtg      3300
     gcaggacgcc gtggtctaca agctcttccg ctcgaacctc cagccgttcc tggtcaagat      3360
     cgtcgagtcg ttcctgacga atcggtcgtt tacggtgacg gtgaatggcg agcgttcctc      3420
     cgtccacaac atccccttcg gcgtgcccca aggatcagtg ctgagcccga ctctctacaa      3480
     catcctcacc tccgacgtgc cgatgatcga tggagtgtcg tacgcattct ttgcggatga      3540
     cactgcatac ttggcatcgg acaaggaccc gaagatcgtc gtcacccacc tacaagcggc      3600
     acagaacaac ctcgaggagt ttcagcggaa gtggcgcatc aagctgaacg ctgggaaaac      3660
     ccagtccatc ttcttcacca ggaggcgtgc tgctcggcac cttccccgca gatcgatcag      3720
     cgtcaacggc cagcctgcga cgtgggacga cgaggtcagg tacctgggtg tggtgcatga      3780
     caagaagctg aagtacgaca agcacgtgaa caacatcatc gagaaggtgg atcgttccac      3840
     caaggcgctc tactccctgc tkaatcggcg gtcgaagctg agcatcaaga acaagtcgct      3900
     cgtggtcaag tgcatcatcc gtccaatgct gacctacgct gctgcggtct ggggcaactg      3960
     cgccaaatcg caccgtaagc gactccaggt gaagcagaac aagctgctca agatggtgca      4020
     caacttggac ccgtggtacc cgaccgacga tctacacgag ctggccggcg tcgacaccat      4080
     cgacgcaagc atcgaaaagg caacgagaac cttcaggact tcctgtggga tgtcaacgaa      4140
     tccgctcatc gaagcactcc tccgtcaaca actgtgatat tagttcttaa gccaaacata      4200
     gatctagggt tttttctcaa aatttatttt ccctaaaaga gcacgcagct agcaamatct      4260
     aaacgtagaa acatgtaccc tccctgtaaa ggcttatgaa ttgatctcag ttgaaaggtt      4320
     ctccaaatct ctgaattgca aatgtaacat cctggagcag aactgttaaa ttctaataaa      4380
     caccaattga attgaattga att                                              4403
//
ID   Jockey-2_DAn repbase;    DNA;    INV; 3144 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3144
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 383-383 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           261..2960
FT                 /product="Jockey-2_DAn_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQAGLDITVWNANGLVNSRPEVELYCKTNQADVLLIS
FT                 ETHFTTRSYLKIRGYDIIAANHPNGRGRGGAAILIRSSIKYEALPAIREEW
FT                 IQCAQIQVTTTNGDITIAAAYCPPRHRVSVEDFGLLLDCLGPKFIIGGDFN
FT                 AKHPWWGSRIRNPKGNALYRQVQSRSLSCHGTGAPTYWPTDPHKIPDVLDF
FT                 VISGGLDSAGIQTREVVDLISDHSAFAISLYSPAILRSARKRLIYKATDFG
FT                 KYQLHLNTVTDPSLPLDSPFDIETAVETMTAHIQQAASVAAPRPSNRPRAT
FT                 DRDIHFWSPEVEELKLEKRRLRRVWMLSRNPRDKTALNRASNILSDTLARL
FT                 RKEAFDGFVEQLEPGDPQHNLWRVTKSIRRPLKRIPPVKRADGIWCRSETD
FT                 RANAFAEHLEEVFTPHSRCSTEDAAETARLLAEPLRDADPIRPVTTEETAE
FT                 LISIMSNTKAPGDDGINAIALKLLPPPSILLITRIYNRCMEIGYFPSSWKR
FT                 AQVAMIPKPGKPEANLASYRPISLLPMLSKILERVFLSRALPVLDEAGLIP
FT                 DHQFGFRRRHGTPEQCHRVVQYILDAFETRKYCMAVMLDVKQAFDRVWHPG
FT                 LLCKLKTALPRPYFIFLKSFLEDRKFAVRCGEAISEYRVVHAGVPQGSVLG
FT                 PMLYNLYTADLPVLHRPNILAATYADDTAFLTTADSALGAAEVMQLQLDLL
FT                 SDWQKRWNIEVNNEKSTATTFSLCQGNCPPVYLNGSPIPQEDNPKYLGFTL
FT                 DRRLTWRPHIIKKRKQAEERLRSFLWLLGRRSKLRTSSKLLIYKAVIRPIW
FT                 TYGIQLWGTASKTNVRRIQTFENRAIRIATGAHVYHDNRTIHEVLNFPWVK
FT                 DEIQRSSARYTQKLHDHPNLLANSLLDNSDRPRRLKRTHPLDLPRIS"
XX
SQ   Sequence 3144 BP; 906 A; 881 C; 700 G; 657 T; 0 other;
     tataaaaagg ccaaaggcgc gttcgcccca aagccgacag tatcacgagg ccagcagcct        60
     cacttcagca aggtcaaccc caacttgagc tacgccagcg ctgccaaaag tggagtacca       120
     cagtttgaca atcccgatcc ttgtcctaca gacaacccga tggacgcctt aatggccagg       180
     atggagtcaa tgttcgagcg aatgatggag aaggtcatga gccaaatgac caaaatgatg       240
     gccaccatct gcagctccct atgcaagcgg gactagacat cacagtttgg aacgccaacg       300
     gtctggttaa ttccaggcca gaagtcgaac tttactgtaa gacaaatcaa gccgacgttc       360
     tcctaatttc ggaaacccac ttcaccaccc gatcatattt gaaaatccga ggatatgaca       420
     tcattgccgc caaccacccc aacggcagag gtcgtggagg cgcggccatt ctgatccgaa       480
     gcagcatcaa atatgaggcc cttcctgcca tcagagaaga gtggattcaa tgcgcccaaa       540
     ttcaagtcac caccaccaac ggagatatca ccattgctgc tgcctactgc ccaccaagac       600
     acagagttag tgtcgaggat tttggcttgc ttctcgattg tcttggtccc aaattcatta       660
     ttggcgggga ctttaacgca aaacacccct ggtggggctc taggatcagg aacccgaaag       720
     gcaatgcatt gtacaggcaa gtccaatcca gaagtctgag ctgtcacgga acaggtgcac       780
     ccacttactg gcctacggat ccacataaga tcccagatgt gctggacttc gtcatctcag       840
     gaggattgga ttctgctgga atccaaacca gagaagtggt cgatcttatt tcggaccaca       900
     gcgccttcgc catatcactc tacagccctg ccatactccg gtcagcccgt aaaaggctta       960
     tttataaagc tacagatttt ggcaagtacc aacttcactt aaacaccgtc accgacccca      1020
     gcctgcctct tgactctcct tttgacatcg aaactgccgt ggaaacgatg accgctcaca      1080
     tccaacaagc agcctcagta gctgctccaa gaccctccaa tcgaccaaga gctaccgaca      1140
     gagatattca cttctggagc ccggaagtcg aagagctcaa gctcgaaaaa cggcgactcc      1200
     ggagagtatg gatgctttca aggaatccca gagacaaaac cgcccttaac agagcgtcca      1260
     atatcctgtc ggatacgcta gcgaggctaa ggaaggaggc ttttgatgga tttgttgagc      1320
     aactcgagcc aggtgacccc cagcacaacc tatggcgggt cacgaaaagc atcagacggc      1380
     ccctgaaaag gatcccaccc gtgaaaagag ctgacggcat ctggtgcaga tccgagactg      1440
     acagggccaa cgctttcgcc gaacacctgg aagaggtctt tacgccccac agtcgttgct      1500
     caactgagga cgcagcggaa accgcccggc tactagctga gcctctccgg gatgccgacc      1560
     cgattcgtcc agtcacaact gaagaaacag ccgagctcat ctccatcatg agcaacacca      1620
     aggccccggg cgatgatggt atcaatgcga ttgcattaaa gctacttcca cctccaagca      1680
     tcctactcat caccaggatc tacaacagat gcatggaaat agggtacttt ccgtcttcat      1740
     ggaaacgtgc ccaagtagcc atgataccta agcctggtaa acctgaagcc aatcttgcct      1800
     cataccgtcc aataagccta cttccaatgc tctccaaaat actcgaaaga gtatttttga      1860
     gcagagcatt gcctgtactg gacgaggctg gactgatccc tgatcaccag tttggcttca      1920
     ggaggcgaca tggaactcct gagcagtgcc atagggtcgt gcagtacatt ctggacgctt      1980
     ttgaaaccag aaagtactgc atggccgtca tgctggacgt caagcaagcc ttcgaccggg      2040
     tctggcatcc cggactcctc tgcaaactta agacagccct gccccgccca tacttcatat      2100
     tcttgaagtc atttctagaa gatcggaaat ttgcggttag atgcggcgag gccatctcag      2160
     agtacagagt ggttcacgca ggagtgcccc aaggaagtgt tcttggtcca atgctctata      2220
     atctttacac ggctgacctc cccgttctac ataggcctaa catacttgca gcaacatatg      2280
     cggacgacac cgccttcctt accaccgccg acagcgcctt gggagcagcc gaagtaatgc      2340
     aattgcagct ggacctactc agcgactggc aaaagagatg gaatattgaa gttaataatg      2400
     agaagtccac cgccaccaca ttttctctct gccaaggcaa ctgtcctcca gtgtacctca      2460
     acggctcccc aatcccgcag gaagataatc ccaagtacct ggggttcacc cttgacagga      2520
     ggctcacgtg gaggccccat attataaaga aaagaaaaca ggcagaagag agacttcgat      2580
     ccttcctctg gcttctgggt agaagatcta agctgcgaac ctcctcgaaa ctcctcatat      2640
     ataaggccgt aatacgccca atctggacgt acggaataca gctctggggc accgcaagca      2700
     agacgaatgt ccgaagaatt caaacatttg aaaatagagc cattcgaatc gccactgggg      2760
     cccatgtcta tcatgacaac cgcaccatcc atgaggttct caattttcct tgggtcaagg      2820
     acgagatcca gagaagcagc gcacgataca cgcagaagct acatgaccac ccgaacctgt      2880
     tggccaactc cctgctggac aacagcgacc ggcccagaag actgaaaagg acgcacccgc      2940
     tggacctccc caggatatca taacaataat caaccaccat aaattaagct aaatttctgc      3000
     cctaattaaa ctctaatcta gttctccaat taatatgtaa attatcaata agtgaagtta      3060
     atgtcataac atttaatggt tgtccctaag gacagtttta aataaacgtt accctgctat      3120
     caaaaaaaaa aaaaaaaaaa aaaa                                             3144
//
ID   Jockey-2_DAzt repbase;    DNA;    INV; 5564 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5564
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 882-882 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Often seen in tandem. Putative TART.
XX
FH   Key           Location/Qualifiers
FT   CDS           292..1908
FT                 /product="Jockey-2_DAzt_1p"
FT                 /note="zinc finger."
FT                 /translation="MAEHSEEVIIENEAMDAENENIKRSRAEAQSSTSDSE
FT                 SEETSEFTSDEISDCESENDTVIMDRDRLDEIMKELNYLRAENIKFQKYIE
FT                 ASSNRSGSTSTSTPTTPTTTSASVPTSLPTPTPTSTPKTIKSKSDSVQKSA
FT                 KSGKQPSPKKPAKSSEQEYPSLPNPAKPVNGEKITVTPKRTRVADPENNNN
FT                 NNDKGLPVIVTYQQNVKTLTTLLKEATKKFMLNVINKNVIHVKVFSLVDFN
FT                 KTKEMFNIQKVLYYSFTPKQIKPHTLIMKKLPIEVYNADEVKAALAEAVPE
FT                 LNILAVKAYKDKMWMVQVEKTEKINVIYKITTLLNCRISIEGFKTHPNAIK
FT                 QCHNCQRFCHVASNCKMAFRCVKCTKTHAPGQCSLKKRDEKVSQEEPTQKT
FT                 QCVNCSGDHTANAKICPVRMEYIKKTTERRNTIQKKNNKTIIKAALPQSRI
FT                 EKGRSFASAAKSGPMPPQAKQTPKTRQEKPKTARENVSFSFEQLNEDSVEA
FT                 FGKDLLTCFDIMKTLVKKYPDSSSDKKGKQQLILDFLIQIALN"
FT   CDS           1913..5032
FT                 /product="Jockey-2_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPVKIXFQNVNSIVQLRKRKELNELLNKHRPDLMLLA
FT                 EHHLRATHSSGLTNYQFVRQQVPSLETTRNNTSFPGTSVAICVRNGINFQR
FT                 VKIDQMHYIEAVAVQIFHTNGNNRRTGLIAISLYLRPQHPLLSSDXDILMX
FT                 SLAKIEDHEQYVIGCDLNAKHPSWNRPTHRPSHINTSGKRLEQWLANQPFV
FT                 TLHPTQEPTHPNRMEDSSIDFFLTSSSTPIDYQLFTHGCKTIKDFPSDHFG
FT                 IAMTINLRRSRLLYNPPKSFHNFQKINPIHWNTIILQNLRNIPNTQNINTD
FT                 DIDSHVHILTNAIARALNSDEAIPKITLNPTNPNNPSIQLSTYCLNLIKRK
FT                 RKLRRTLFRRVATLTPNQRNQINSTIKDLDTQIKCHIEFAELKSIDLKLRK
FT                 INPSKISQKSLQALNPSTPPKEQLAHDLVLTNEEAALIDIDLDNSSSPIIT
FT                 STSSKINALAWSFERIHSQNENITNSDTVLRAHTATINETIAQTASTTLNS
FT                 CKIIFNFSRTADGNWPESHECGFTNAEELFEILKQKNSKKTMGPDGTSNFL
FT                 LKRCNMPILHHLATLFNHCLNLGYFPSEWKNSSIIPIHKPGTSPQSLRAYR
FT                 PIALLSAISLLLEKIIMGQIQKHMDLNSTLKDTQYGFRAKSSTNHAFIAAN
FT                 DFIFENVSRRCATISCALDFEKAFDTVWTSGLIYKMTQFNFNPDIIKIIHN
FT                 YLTKRTFQVCSPVDEDRSLIRSIAAGVPQGSLLAPILYNIYLADIPEYQAP
FT                 TGSNIRIKALIYADDILLLASSGSIRTAERELNGYLKVLCSYFTKWHLKLN
FT                 ANKCSSSTLRGPRVGDLYPNARRYKPSLYIYNRLPIKYEKQFKYLGVVYDE
FT                 KLNFKIHTGAARRKACAMMSKIQHIYKPIQASTYGNIDQLTKICALAYRKL
FT                 IQPVLMYGYVAWMNISSSGMEELRRFERKILRKSIGTQSRNALTGHYITNK
FT                 QLYSLTKTTRIDRLMFQILEKLTERDNMIQTEIHANYPTDCLTAHHINHLM
FT                 EMGIIYDEDNNLIFHHRRQRSLSHADGLLYNISQ"
XX
SQ   Sequence 5564 BP; 2091 A; 1312 C; 987 G; 1169 T; 5 other;
     actaagcaga gtgacttgaa gtgaaagtga cttgaagtgg aagtgacttg aagtggaagt        60
     gacttgaagt ggaagtgact tgaagttact tgaagcggaa gtgacgtgaa gtggaacaag       120
     tcagaggatc gcatgaattg caaaaggaaa atctgaactt tataaacaat tgtgatctgt       180
     gattgtgcaa caaaagtagt aaactgcgag acgcagagtg ccagttgtca agtgtaactt       240
     gatatgcctg tggaaagtgt ttgccaaaca aagtgaagac acaccaacaa aatggcagag       300
     cattcggagg aagtgataat cgaaaacgag gcaatggatg ccgaaaatga aaatataaaa       360
     agatcaagag ctgaagcaca atcatctacc tcagacagtg aaagtgagga aacaagtgag       420
     ttcacaagcg atgaaataag tgattgtgag tcagaaaatg atacggtgat aatggaccgc       480
     gatcggctgg atgaaattat gaaagagtta aattatctcc gtgcggaaaa tataaaattt       540
     caaaaataca tcgaagcctc aagcaatagg tccggctcga catcaacatc aacaccaaca       600
     acaccaacaa ctacatcagc atcagtacct acatcattac ctacaccaac accaacatca       660
     acaccaaaaa ccataaaaag caaatctgat agtgtgcaaa aaagtgcgaa aagtggaaag       720
     cagccatctc ccaaaaaacc ggccaaatca agtgagcaag aatacccaag tctaccaaat       780
     ccagcaaaac cagtgaatgg ggaaaaaatt acagtgacac caaagaggac acgcgtagca       840
     gacccggaaa ataataataa taataatgat aaagggctgc cggtcatcgt aacatatcaa       900
     caaaatgtaa aaaccctaac gacactgctg aaggaagcaa cgaaaaaatt catgctgaac       960
     gtaattaaca aaaacgtaat tcatgtgaag gtcttctccc tagttgattt taataaaact      1020
     aaagaaatgt tcaacataca aaaagtgctg tattatagtt tcacgcccaa acaaataaag      1080
     ccacatacgt taataatgaa aaaactcccg atcgaagtat acaatgctga cgaagtaaaa      1140
     gctgcactag ctgaggccgt gcctgagcta aacatcctgg cagtaaaggc ctacaaagac      1200
     aaaatgtgga tggtgcaagt ggagaaaaca gagaaaatta atgttattta caaaataaca      1260
     acactcctca actgccgaat cagcatcgag ggctttaaaa cacacccaaa cgcaattaag      1320
     caatgccaca attgccaacg attttgccac gtagcaagca attgcaaaat ggcattccgg      1380
     tgtgttaaat gcacaaaaac acatgcccca ggacaatgca gccttaagaa aagagacgaa      1440
     aaagtgagcc aagaagagcc aacccaaaaa acccaatgcg tgaactgctc aggggaccat      1500
     acggctaatg caaagatctg cccagttcga atggaataca ttaaaaaaac aactgaaagg      1560
     cgtaatacaa ttcaaaagaa aaacaacaag acaatcataa aggcagccct cccacaaagc      1620
     cgkattgaaa agggacgaag cttcgcctca gcagccaaaa gcggaccgat gcctccacaa      1680
     gcgaagcaaa cacccaaaac acgccaggaa aaaccaaaga cggccagaga aaacgtcagt      1740
     ttttcattcg agcaactgaa cgaagattcc gtggaagcat tcggaaaaga tctccttacc      1800
     tgcttcgaca ttatgaaaac gctcgtaaaa aaataccccg attccagctc ggataaaaaa      1860
     ggaaagcaac aactgatttt ggactttctg attcaaatcg cgctaaacta aaatgccggt      1920
     aaaaatcwtg ttccaaaatg taaatagcat cgttcaattg agaaaacgaa aggaactcaa      1980
     cgagctatta aataaacaca ggccagatct gatgctcctc gctgaacacc atctgcgagc      2040
     cacgcactca tcagggctaa caaactacca atttgtgaga caacaggtac caagtttaga      2100
     aaccacgcgg aacaacacaa gtttccctgg aacgtcggta gccatctgtg tgagaaatgg      2160
     tatcaatttc caacgagtga aaatcgacca aatgcactac atcgaggctg tggcagtgca      2220
     gatcttccat accaacggaa ataataggag aacgggactg attgcaattt cactgtatct      2280
     gcgcccccag catcctctac taagctcaga ctkggacatt ctgatgmact cgctagctaa      2340
     gatagaggac catgagcaat acgtgatcgg atgtgacttg aacgcgaaac atccatcttg      2400
     gaataggccc acacaccgtc caagtcacat caacacatca ggaaaacgct tggagcaatg      2460
     gctggcaaac caaccatttg taaccctaca cccgacccaa gaacccacgc atccaaatcg      2520
     gatggaagac tcctccatcg atttcttctt aacatcatcc tcaacaccaa tcgactacca      2580
     attatttaca cacggctgca aaaccattaa agacttccca tcagatcact ttggaatagc      2640
     tatgacaata aacctaagac ggagccgact attatacaac ccaccaaaat ccttccacaa      2700
     ttttcagaaa ataaatccga tacactggaa cactataata ttacagaacc ttaggaacat      2760
     cccaaacacc caaaacataa acacagatga catagatagc cacgtccata ttttaacaaa      2820
     cgcaatagcc agagccctta attcagatga agcaatccca aaaataacac taaacccaac      2880
     taacccaaat aacccatcca tccaacttag cacctactgc ctaaacttaa ttaaaagaaa      2940
     acgtaaactt agacgtacac tcttccgccg cgtagccaca ctaacaccca atcaacgaaa      3000
     tcaaataaat agcacaataa aagacttgga cacacaaatt aaatgccaca tagaatttgc      3060
     tgagctaaaa tcaatagacc taaaactacg caaaataaac ccaagtaaaa tcagccagaa      3120
     atcactccaa gcactcaatc caagcacgcc accaaaagaa caactagccc atgatctagt      3180
     actaaccaac gaggaagcag cattaataga catagatcta gataacagct cctccccaat      3240
     cataacatcc acaagttcaa aaatcaatgc attagcctgg tctttcgaaa gaattcatag      3300
     ccaaaacgaa aatatcacca actcagacac tgtcctcaga gcccacacag ccactataaa      3360
     tgaaaccata gcccaaaccg catccacaac attaaactca tgcaaaatta tttttaattt      3420
     ttctagaaca gcagacggta actggcccga gtctcatgaa tgtgggttca caaacgccga      3480
     agaactgttt gagattctga agcaaaaaaa ctcaaagaag actatgggac cagacggcac      3540
     cagcaacttc ctgttgaaac gctgcaatat gcctatttta catcatttgg caacattgtt      3600
     caaccactgc ctcaacttgg gatactttcc gtccgagtgg aagaacagca gtataatccc      3660
     tatccacaaa ccaggaacaa gtccgcaaag ccttcgggcc tacagaccta ttgcccttct      3720
     atctgcaata agtctgctgc tggaaaaaat aataatggga caaatccaga agcacatgga      3780
     cttgaatagc acattgaagg acactcagta tggtttcaga gcgaaatcat ctaccaacca      3840
     tgcatttatc gcagcaaatg atttcatctt tgagaatgtt tcccgcagat gtgctacaat      3900
     ttcctgtgct ctggactttg aaaaagcatt tgacacagtc tggaccagcg gactcattta      3960
     caagatgacg caatttaatt ttaatcctga tatcataaaa ataatacata attatctaac      4020
     aaaacgaaca tttcaggtat gcagtccagt tgatgaggat cggtccctaa taaggtcgat      4080
     cgcagcagga gttccacaag gatcactgct ggcacctatc ctctacaaca tctacctggc      4140
     agacataccc gaataccaag ctcctaccgg ctcgaacata agaatcaagg cgcttatata      4200
     cgccgatgat atcctgctct tggcttcctc aggctcaata cgtaccgcgg aaagagagct      4260
     taacgggtac ctgaaggtgc tatgcagtta cttcactaaa tggcatctta aactcaacgc      4320
     aaacaaatgc agctcctcaa ctctaagagg acctcgagtg ggcgacctgt atccgaatgc      4380
     gagaagatat aagcccagcc tgtacatcta caaccgtctg cctatcaaat atgaaaagca      4440
     gttcaagtac ctaggcgtcg tctacgacga aaagctcaac ttcaagatac acacgggagc      4500
     tgcccgaagg aaagcatgtg caatgatgag taagattcag cacatctaca agccaataca      4560
     agcctccacc tatgggaaca tcgatcaact taccaaaatc tgcgctctag cctacagaaa      4620
     actaattcaa ccagttctta tgtacggcta tgtagcgtgg atgaacatat cgtcttccgg      4680
     aatggaagag ctgcgacgat tcgaacgcaa aatattacgc aaatcaattg gaacccaaag      4740
     ccgaaacgca ttgacgggcc actacataac gaacaagcag ctctactcat taacaaaaac      4800
     aacaaggata gacagactca tgttccaaat tttggaaaaa ctaactgaaa gagacaacat      4860
     gatacaaacc gaaatacatg caaactaccc tactgattgc ctgactgccc accatataaa      4920
     ccatctaatg gaaatgggta tcatctatga cgaagacaat aacctcatct tccatcacag      4980
     acgacagcga tccctaagtc acgcggacgg gctgttatat aatatcagcc aataagccac      5040
     tccaccccac atccacctgt aaatactccc ctcctccact cctcacctcc catatcctag      5100
     ttccatccaa agattagaat aagcctagtt cgtaaattag cccgtaagac ttaaacaaac      5160
     acaaaatcaa attttattca ggtttttagc ataaccattt tttcctgaaa aacactccaa      5220
     accactagac tttaaaccat aacataacct aaactaatca taagataaac taactgatat      5280
     aatagtaact aaaggactat cactctgata agcttaaagc gcagagtaaa atcatacaca      5340
     taagttaaag taagcttgaa tttgtcactc atgtatcact agataactaa gcagaagctg      5400
     tgctactgca gattgaaaaa tgacaataaa taaatttagc aaaaaaaatt tagcaaaaaa      5460
     ttttttcgtt tcatcaattg taaattgtgg tactgtgaag tgaaatagaa twcaagtaaa      5520
     tagtgaaatg ccgcccaaga ctagtggaaa ggcagccaaa aagg                       5564
//
ID   Jockey-2_DBi repbase;    DNA;    INV; 2500 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon from the Drosophila biarmipes
DE   genome.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2500
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 936-936 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It is likely 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2314
FT                 /product="Jockey-2_DBi_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="DWNAKHPWWGSAITCHRGNLLAASAISINANILATGA
FT                 PTYYPSAVNRRPSCLDFAIYRNIPHDKLSIRDSWDLESDHLSLITTLKTEA
FT                 IQCTQRRQLLSKHTNVAVFKEELCRSIRLNIELNSAAEIDDAVDLFTTNVT
FT                 NAARSANVYTANNHGRALIRHSNRIDPTIAEILVRKRALRRRYIRTHSPED
FT                 KAQWHRCARELHVAMAELKNAQFEHMLTNMDYSNDSIFNMWSFTKKVKRMP
FT                 QKVTPLKNSNGNWCRSLEEQVQTFAEHLGDRFTAFNFASEEDINRINEILQ
FT                 RPFQMSPPIRHIRLEEVSNMIRTLKSRKAPGHDLISNAVLKILPKRALLLI
FT                 TLIFNAILRVQYFPKKWKSARISMILKPGKPEQDPCSYRPISLLPSLSKVM
FT                 ERLIASRLIIHLEDNDTIPMHQFGFRAGHSTIEQLHRVVNHILKAYDNKEY
FT                 CNGIFLDIQQAFDRVWIPGLLAKVKTALPANLFELIRSFLTNRDFCVQSRD
FT                 AISANVAITAGVPQGSVLGPLLYSIFTADIPKPSYEEMTYDNSKMLLASFA
FT                 DDVCFLSSSNSETESSQTLQTYLNEFEKWATANNIKINESKCVNVCFTLRR
FT                 KTTPVVHINNVDIEQATKAKYLGLTLDKRLTFREHIARVVKMCNLKRNQLF
FT                 WMLNKKSKLSLRCKRHIYQQIIAPTWRYGIQIWGVAAASHRKRFQTVQNKT
FT                 LRQITGCEWFVSGQTLHNDLNLSLVEDQISFFSSRYNDRLTAHRNRLARRL
FT                 QGAIPIRRLKRRHFGLLLRD"
XX
SQ   Sequence 2500 BP; 828 A; 608 C; 485 G; 579 T; 0 other;
     agactggaac gccaaacatc catggtgggg ttctgcgatc acctgtcacc gaggtaactt        60
     acttgccgca agcgccatct caattaacgc caacatcctg gcgactggag caccaacata       120
     ctatccaagc gcagtaaatc gaagaccatc ctgtttagac tttgcaattt atcgcaacat       180
     tccacacgac aagctaagca tcagagacag ctgggacctt gaatcggacc acctatctct       240
     catcactaca ttaaaaacag aagccataca atgcactcaa cgtagacaac ttcttagcaa       300
     acacacaaat gtagctgttt tcaaggaaga actatgtaga tcgatacgcc ttaacattga       360
     gctcaactct gctgctgaga ttgacgacgc tgtagacctc ttcactacca acgtgacaaa       420
     tgcggcgagg agtgcaaacg tgtacactgc aaacaatcat ggcagagccc tcatacgcca       480
     ctcgaataga attgacccaa ccattgcaga gattctagtc cgtaagagag cactgagaag       540
     acgttatatt cgaacgcaca gtcctgagga taaagctcaa tggcatagat gcgccagaga       600
     gcttcacgtt gccatggctg aattgaaaaa tgcgcaattc gaacatatgc tgaccaatat       660
     ggactattct aatgattcca tttttaatat gtggtccttt accaaaaaag taaaaagaat       720
     gccacagaaa gttacgcctc tgaagaacag caatggtaac tggtgtcgct ccttagaaga       780
     gcaagtacaa acatttgcgg aacaccttgg cgacagattc actgcgttta atttcgcatc       840
     cgaggaggat atcaacagaa taaacgaaat actacagcgc cctttccaga tgtcacctcc       900
     aataagacat atccgtctgg aagaagtctc aaacatgata cgtaccctca aaagtcgaaa       960
     ggcgccaggt catgacctaa taagcaacgc agtacttaaa atccttccca agagagcact      1020
     attacttatc acattgatat tcaatgcgat acttagagtg caatactttc ccaaaaaatg      1080
     gaagagtgct agaatcagta tgattctaaa gccagggaaa ccggaacagg atccatgctc      1140
     ctaccggcct atcagcctcc tgccctcttt atcgaaggta atggaaaggc tgatagcttc      1200
     ccgacttata atacacctag aagacaatga tactatccca atgcaccaat tcggattcag      1260
     agccggccac agtacgattg agcaattgca ccgtgtagtc aatcacatcc tgaaggccta      1320
     cgacaataaa gaatactgca acggcatctt tcttgacata caacaggcat ttgatagagt      1380
     ttggatcccg ggactactag ccaaagtcaa aacagcgctg ccagccaacc tgtttgagct      1440
     catcagatcg tttctcacaa acagagattt ttgcgtccag tccagagacg caatctctgc      1500
     aaatgttgcc attacagctg gcgttcccca aggaagcgtc ttaggaccgc tactgtactc      1560
     catctttaca gcagacatcc ccaagccaag ctatgaagaa atgacctacg acaacagcaa      1620
     aatgctgctg gccagcttcg ctgacgacgt ctgctttctc agctcctcga acagtgagac      1680
     cgagtcttca caaacgctgc aaacctacct caacgaattc gagaaatggg ccacggcgaa      1740
     caatatcaaa atcaacgaaa gcaaatgcgt aaacgtttgc tttacgttac gccgaaaaac      1800
     aactccggtg gtccacatta ataatgtgga catagagcaa gcgactaagg cgaaatacct      1860
     aggcctcaca ctggacaaac gcctaacctt ccgagaacat attgccagag tcgtcaaaat      1920
     gtgcaaccta aagcggaacc aattattctg gatgctaaac aagaaaagca aactatctct      1980
     aagatgcaag cggcacattt atcaacaaat catcgcacca acttggagat atggaatcca      2040
     aatttgggga gtggcggctg cgtcccaccg aaaacgtttc caaaccgtcc agaacaaaac      2100
     attaagacaa atcactggct gtgagtggtt cgttagcggc caaacgcttc acaatgacct      2160
     aaacctgagt cttgttgaag accaaatatc gttcttctca agcaggtaca acgaccgtct      2220
     aactgcccac cgtaatcgtc tagcccggag attacagggg gctatcccaa ttcgcaggct      2280
     caaaagaaga cattttgggc tgctcctaag agactaatat gaatatatta tttacttgaa      2340
     actagtcgta atttgatcta ctcctatata ccaagttgaa aactaattat aatttataat      2400
     taagagatta tttacttaag aaaacattta ggttaaaggc tttaattaga tctgttcctg      2460
     gattatatta aataaagatg ttaattaaaa aaaaaaaaaa                            2500
//
ID   Jockey-2_DBp repbase;    DNA;    INV; 3068 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3068
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 710-710 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           38..2860
FT                 /product="Jockey-2_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="ADAGKCRVQQGFQRASPGSYCAIAEMIQPSLNIGLWN
FT                 ARGLVRVSEELRLFLSAHNIDIMLATETHMRAGQHIYLPGYLIYHAYHPSG
FT                 NSRGGSAVIIKDSLSHIPLPSVSSNDRQIASVQLQTSEGNVRLVAIYLPPS
FT                 ETWVQSEFESLLAEFGSKFIAGGDYNAKHAWWGNSRACRRGKLLQEVIANG
FT                 HYQVLSTGEPTFYSYNPLLTPTALDFFIINGYAIDRLQVRTIHELSSDHTP
FT                 IMAILHATPERKPQRSRLLARGANLNAFKVHLEQLSEVSIEIQEPSDIDNA
FT                 ISLFMRMINQAAEIAAPSNHQHTETSIHPQLPPRIGALLNLKRRVRREYSR
FT                 TGDVRIHQIYNRLANCLSKALARRKQASIDRFLENLDTDASSNYSLWRITK
FT                 RYKAQPTPKSAIRNPSGGWCRTSLEKAEVFANNLEQRFKPYEYSPESIRRQ
FT                 VEEFLESPFQMSLPANPVSLTEVKDLVGKLSPKKTPGEDLLDNRTIRLLPD
FT                 QALQFLVTLFNSILTVGYFPKVWKSANIHMIPKPGKSPTDVDSYRPISLLP
FT                 SLGKIMERLILNRLLTLENVTSAIPEFQFGFRLQHGTPEQLHRVVNFALEA
FT                 FEKKEYAVAAFLDIQQAFDRVWHPGLLYKAKSLLTPQLFQLVKSFLEERTF
FT                 HVSADGYKSSTKPISAGVPQGSVLGPTLYSIYASDMPTKTPITEVNEQDVL
FT                 IATYADDTAVLTKSSSILAATFALQEYLDAFHQWATNWNIRVNADKCANVT
FT                 FTNCRSTCPGVNLNDSPIRALPAYKYLGVTLDKKLTFGRHITCIQNSFRTK
FT                 VARMSWLLTPRNKLALGCKVQIYKSILAPSLFYGLQVYGIAAKTNLNKIRV
FT                 LQAKTLRRISGAPWFMRTRDIERDLNVPKIGDKLQELARKYMERLNEHPNS
FT                 LAKKLGTAAIRSADPINRVKRRLKRHHPQDLPNRILT"
XX
SQ   Sequence 3068 BP; 948 A; 773 C; 622 G; 724 T; 1 other;
     tccgcgacat caattccaaa ctggacactc tgtttaagct gatgcaggaa aatgcagagt        60
     ccaacaaggc tttcagagag ctagtccagg ctcttattgc gcgattgccg aaatgattca       120
     accatcacta aacatcggat tgtggaacgc tcgtggacta gtcagagtat ctgaagagct       180
     tcgattattc ctcagcgctc ataacataga cataatgctt gccacagaaa cacacatgcg       240
     cgccggtcag cacatctact tgccaggcta tctcatatac catgcttacc accccagtgg       300
     caacagcaga ggtggctctg cagttattat taaggattcc ctaagtcaca tacccctgcc       360
     ctccgtctct agcaacgaca gacagatagc gagcgtccaa ttacagactt cggaagggaa       420
     tgtcagatta gtggcaatat atctacctcc atcagaaaca tgggttcaat cagaattcga       480
     atccttgctg gccgaatttg gaagtaagtt cattgccggc ggtgattata acgccaaaca       540
     tgcatggtgg ggaaactcac gagcctgtag aaggggtaag ctgttgcaag aagtcattgc       600
     gaacgggcat taccaagtac tttccacggg tgaacccact ttttactcat ataaccccct       660
     actaacaccg acagcgcttg attttttcat tatcaatgga tacgctatag acaggctaca       720
     agtaagaaca atccatgaac tatcctcgga tcacactcct ataatggcca tactgcacgc       780
     aacacctgag agaaaaccac agcgctcgcg actccttgcc agaggtgcta atttaaacgc       840
     tttcaaagtc cacctagaac agctgagcga ggttagcata gaaatccagg aaccttctga       900
     cattgacaat gccatcagcc ttttcatgcg catgataaac caggctgctg agatagctgc       960
     acccagcaac catcaacata cagagacatc tatacatccc cagctaccac ccagaattgg      1020
     tgcgctcctc aatctaaagc gaagagtaag aagagaatat tcaagaacgg gagacgtccg      1080
     aatccatcag atatataatc ggctggctaa ctgtctaagt aaggcgctcg ccagaagaaa      1140
     acaagcatcc atagacagat ttttggaaaa tctagacaca gatgctagtt ctaactactc      1200
     gctgtggcgt atcacaaaac ggtataaggc tcagcccacc ccaaaatcag ccataagaaa      1260
     tccctcaggt ggctggtgcc gtacgagcct agagaaagct gaagtgtttg ctaacaacct      1320
     tgagcaacgc ttcaagcctt acgaatactc gcctgaaagt atacgtcgac aagttgaaga      1380
     gtttctagaa tctccattcc aaatgagtct gcctgctaac cctgtctcac tgacagaagt      1440
     gaaagacctt gtaggtaaac tctcgccaaa gaaaactcct ggtgaagacc ttttggacaa      1500
     caggacgatc cgacttttac cggatcaagc cttgcaattc ctggtgacgt tgttcaacag      1560
     catactaact gttggatact ttccgaaagt ttggaaatcg gcaaacatac atatgatccc      1620
     aaaaccagga aaatcgccaa ctgacgtgga ctcatacagg cccattagtc ttttaccatc      1680
     cctgggaaaa atcatggaaa ggctgatcct gaacaggcta cttactcttg agaatgtcac      1740
     cagtgcgatc ccggaattcc agttcggctt tcgtcttcaa catggaactc ctgagcaatt      1800
     gcacagagtt gttaactttg ccttagaagc ctttgagaag aaggagtatg cagtagctgc      1860
     cttccttgac attcagcagg cttttgacag agtatggcac cctgggctcc tgtataaagc      1920
     caaaagtctt cttacgccac agctgttcca gctcgtgaaa agcttcctgg aagaacgcac      1980
     attccacgta tctgctgatg gatacaagtc gtccaccaaa ccgatctctg ctggtgttcc      2040
     ccaaggtagc gtcctcggcc ctactctata ctctatctat gcttcagata tgcctacaaa      2100
     aactccaatc actgaagtga atgagcaaga cgtgctaatt gcgacctacg ctgatgacac      2160
     ggctgtcctg accaaaagca gtagtatctt ggcagccact tttgcattgc aggagtatct      2220
     ggacgcattt caccaatggg ccacgaactg gaacattcgt gtaaacgcag acaaatgtgc      2280
     caatgtaack tttaccaatt gccgaagtac ctgcccagga gtcaacctca acgatagtcc      2340
     aatcagagcc cttcctgcat acaagtacct cggtgtcacc ttggacaaaa aactcacttt      2400
     tggcaggcac attacctgta tccaaaactc tttcaggact aaagtggctc ggatgtcctg      2460
     gctcctcaca ccacgcaata agctcgcgct tggatgtaag gtgcagattt acaagtctat      2520
     actagcgcca agtcttttct acggactcca ggtttatggt atcgctgcaa aaaccaacct      2580
     gaacaaaatc cgggttttgc aagcgaaaac tcttcgaagg atctctggag ctccgtggtt      2640
     tatgcgaacc agagacatcg aacgagatct caacgtgcct aaaatcggag acaagctgca      2700
     ggaacttgct cggaaataca tggaacgtct aaatgagcac cccaacagcc tagctaaaaa      2760
     acttggtacc gctgctatca ggagcgctga tccaattaat cgagtcaaga gaagactaaa      2820
     aagacaccac cctcaagacc taccaaaccg gatcttgacc tagccaattt cgtcaccctc      2880
     gacataatca taaataaaaa taagttaaaa taaaaaaacc attaaatcac ctcttgccct      2940
     aagtaacgct tagactaagt atttttaaaa aatttgtaaa aagcgattag attaagctgt      3000
     caatttggta gtagtgcgct aatcttaaga ataaaatttc aacattcaaa acgttaaaaa      3060
     aaaaaaaa                                                               3068
//
ID   Jockey-2_DEl repbase;    DNA;    INV; 4682 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4682
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 555-555 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1867
FT                 /product="Jockey-2_DEl_1p"
FT                 /translation="MSKNVDQRTQRQKQQDEAREKTQREQDKRRLSLARNN
FT                 AYFSFTSNTLEPKVQESASLLTAENQRASSCSPALLFTAQTPWSEQCKTPT
FT                 ELLPPSATTTATTTSTTTVSVANNAITTPLSSSAAGKATTQPSAKIGSNGK
FT                 NKATVGEITIPQAGSAMQTGMDRYINISKRKLTPPKKSDGNMPKINRTNKG
FT                 PENLGPLNENRFSILAEPETEYEELAPKKLKPPPIFVREKISNVLVNKIVE
FT                 LVGKDNFHVIPLMKGNISETKLQTKTEDDFRAVSKYLNDAKKNYYTYQLKS
FT                 CKGLQVVLKGIEPDVTPSEIIEALKENGFCAKNVINIMNKNKKPQPLFKVE
FT                 LEPDSRTLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEYGHTR
FT                 AYCTLRSVCVACGNCHGSEPCPANKGDSLTKKCVNCQGNHTANYRGCPVYK
FT                 EMKSRMQRATTARQNIYMKSQTTPEVFFAKAARSSFGPSITTNGISYASAL
FT                 RSGTAHIEPKTDNIQQAMGQPQSNMETMMITLQQNMMEFMSFMKTTMQTLM
FT                 QNQNILLQMLAAQQSK"
FT   CDS           1874..4537
FT                 /product="Jockey-2_DEl_2p"
FT                 /translation="MPSLRITLWNANGVSRHIPEITQFLNENHIDVMLLAE
FT                 THLTSKYNFQIRGYTFYGTDHPDGKAHGGTGILIRDRIKHHFHQRFAKNYL
FT                 QATSIKLQLGTSNLAIAAVYCPPRFTVSEDQFMDFYNSLGERFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNALIKTCNKLDYVSPGSPTYWPTDPRKLPDLID
FT                 FAVTKNISRNLISAKSLLDLSSDHSPVLITLLQSPELIEHPCRLTSHRTNW
FT                 LKFKKYVSSHIELTPQLNXKEDIDCYADALESVLVAAAKVSTPQGRDGHTH
FT                 QHKTNLEIEQLVLEKRRLRRAWQTSRSPSSKHSLKEAGRRLTRALRHEEEK
FT                 AQRQYIEKLSPTSTKHPLWRAHPNLSAPAETVIPVRDSSGSWARSDKDRAC
FT                 TFALHLRNVFQPNPANNSFTLPSPSIRXGTETAPILFQXNEVAKVISEQLK
FT                 TKKAPGGDLITPKMLIELPNCAVEVICKLFNGITRLGYFPKKWKKSVIIMI
FT                 PKPGKDHTIPASYRPISLLSCLSKLLEKCLLTRIIPYLKEHNVIPAHQFGF
FT                 RESHGTIEQVNRLTTEIRTAFEFREYCSAVFLDVAQAFDRVWLDGLMHKIR
FT                 TLLPENTHRILESYLYNRAFAVRCNTTISDDYTIEAGVPQGSALGPTLFLL
FT                 YTADIPTNERLTTSTFADDTAILSRSKCPIQATALLADHLVVVERWLSDWR
FT                 IKINAQKCKHITFTLNRQTCPPLTLNNTPLPQADDVTYLGVHLDRRLTWRR
FT                 HIEAKKIHLKLKSNSLHWLINARSPLCPDFKVLLYNSTLKPVWTYGSQLWG
FT                 NASSSNIDIIQRAQSKILRTITGAPWYVRNDNIHRDLGILPVKDEISKQKA
FT                 SYHTKLTSHPNQLARGLARVSNRTRLQRNDLPAQQ"
XX
SQ   Sequence 4682 BP; 1549 A; 1203 C; 907 G; 1018 T; 5 other;
     ttcggtcgcg tgtagacgtg ttttcttaac gctccggaaa aacaataagc cactaagtcg        60
     aaaacgttcg aaaaaattta taaacgcgag gttttgcgat tcgcgatgct aattcgcata       120
     tcgtaaacta aagttttaat taattaatta attaatcttt acgctctatc aataacaaat       180
     gagtaagaac gtggatcagc gcactcaacg ccaaaaacaa caagacgaag cccgtgaaaa       240
     aactcagaga gagcaagaca aacgtcgtct ctccttggcc cgtaacaatg cttatttctc       300
     gttcacgagt aatactctag aaccgaaagt gcaagaaagt gcaagtttac tgaccgccga       360
     aaaccagaga gctagttctt gctctcccgc cctgcttttc accgctcaaa cgccatggag       420
     tgagcaatgc aaaactccaa ccgagcttct gccacctagt gcaacaacaa cagcaactac       480
     tacgtcaact acaacggtct ctgtcgccaa caatgcaata acgactccac tctcttcttc       540
     tgcagcgggt aaagcaacaa cacaaccaag tgcaaaaatc gggtcaaacg gcaaaaacaa       600
     agctacggta ggagaaatta caattccgca agcgggttcg gccatgcaga caggcatgga       660
     tcgctacatt aatatttcca agcgcaagct aaccccccca aaaaaatctg acggcaatat       720
     gcccaaaata aaccgtacca acaaaggccc tgaaaatctc gggccattaa atgaaaatag       780
     attttccatt ctggcggagc ctgaaacaga gtatgaagaa ttagccccaa agaaacttaa       840
     gcccccacct atctttgttc gggagaagat ctccaacgtc ctagtcaaca aaatagttga       900
     gcttgtcggg aaggataact ttcatgttat tccgcttatg aaagggaata taagcgaaac       960
     caaacttcaa accaaaaccg aagatgattt ccgagcagtg tcgaagtacc taaacgatgc      1020
     caaaaagaat tactacacgt accagctgaa aagttgcaag ggcttacaag ttgtcctcaa      1080
     gggaatagaa cccgatgtga ccccctccga aattatagag gctttaaaag aaaacggttt      1140
     ttgcgccaaa aatgttataa acattatgaa caaaaacaag aagccgcaac cacttttcaa      1200
     ggtcgagctg gagccagaca gcagaacttt gaaaaaaaac gcagtgcacc cgatctacaa      1260
     gttgcagtac cttctgcacc gtaggatcac agtagaagag ccgcacaaac ggaacgggcc      1320
     agtgcaatgc acaaactgcc aggaatacgg acacaccagg gcttactgca ccctcaggtc      1380
     agtttgtgta gcttgtggaa actgccacgg ctccgaaccc tgccctgcca acaagggaga      1440
     ctctctcact aaaaagtgtg taaactgcca aggaaaccac acagcaaact acagaggctg      1500
     tccagtctac aaggagatga aaagtcggat gcaamgagcg acaacggcac gccagaacat      1560
     ttacatgaaa tcacaaacga cacccgaagt tttcttcgca aaagcagcca ggtcatcatt      1620
     tggcccttca attaccacca acggcatttc ctacgccagt gctctaagat caggcacagc      1680
     tcacatagag ccgaaaactg ataacataca gcaggccatg ggacagccac aaagtaacat      1740
     ggaaactatg atgataactt tgcaacaaaa tatgatggaa tttatgtcct tcatgaaaac      1800
     caccatgcaa actctaatgc aaaaccaaaa tatcttgtta caaatgcttg cagctcagca      1860
     gtccaaataa attatgccta gcctccgaat aactctgtgg aacgccaacg gtgtttcacg      1920
     gcatatacct gaaataactc aatttctgaa cgaaaaccac atcgacgtta tgttgctggc      1980
     agaaacgcat ctcaccagca aatataactt tcaaatacgg ggatacacgt tctacggcac      2040
     cgatcatcca gatggtaaag cacatggcgg aaccggcatc ttaataagag accgcatcaa      2100
     acaccacttt caccaacggt ttgcaaaaaa ttatctgcaa gctacatcga taaaattaca      2160
     gttgggcacc agcaaccttg ccattgccgc tgtctactgc ccaccccgct ttacagtctc      2220
     cgaagaccaa ttcatggact tctacaattc acttggagag cgattcatag cagcaggtga      2280
     ttacaacgcc aagcacacac actggggatc ccgccttgtg acccccaaag gaaggcaact      2340
     atataatgca ctcatcaaaa catgcaacaa actggactac gtttcaccag gcagtcctac      2400
     atactggcca acagatccta gaaaactacc tgatttaatt gattttgctg tgacaaaaaa      2460
     tatttctcgc aatctaatat ctgcaaaatc gcttttggat ctatcatcgg accactcacc      2520
     agtgctaata actcttcttc aaagcccgga attaatcgag cacccttgca ggctgacgtc      2580
     gcatcgaacc aactggctga agttcaaaaa gtacgtaagt tcccacatcg aactaactcc      2640
     acagctcaac wtcaaggagg acatcgactg ctatgccgat gcactggagt ctgtactcgt      2700
     cgcagcagcc aaagtctcta caccgcaagg gagggatggg cacacacacc aacacaaaac      2760
     taaccttgaa atcgaacagc ttgttttgga gaaaagacgt ttgaggcgtg cttggcaaac      2820
     cagcagatcg ccatcctcaa aacatagtct taaggaagct ggtcgcagac ttaccagggc      2880
     tctaaggcac gaagaagaaa aagcacaacg ccagtacatt gagaaacttt cacccaccag      2940
     caccaagcat cccctgtgga gggcccaccc aaatctaagt gcgccggccg aaacagtaat      3000
     tcccgtaaga gactcttcag gcagctgggc cagaagcgac aaagacagag cttgtacatt      3060
     tgctttacac cttcgaaatg tttttcagcc aaaccctgca aataattcat tcacactacc      3120
     gtcgccgtca attcgagktg gaactgagac ggcgccaatt ctgttccaam caaacgaagt      3180
     tgcaaaagtc atcagcgagc aattaaaaac aaaaaaggcc ccaggcggtg atctaataac      3240
     tcctaagatg ctaattgaac tcccaaactg tgcagttgag gtaatttgta aactctttaa      3300
     cgggattaca cgacttggct acttcccaaa aaaatggaaa aagtcggtaa tcataatgat      3360
     cccaaagcca ggaaaagatc acacaatacc agcctcatac agaccgataa gtttactctc      3420
     gtgtctgtca aaactgctcg aaaaatgcct tttgacgcgc ataatcccat atctgaaaga      3480
     gcacaacgtt attccggcgc atcaatttgg ctttcgagaa agccatggaa caatagagca      3540
     agtcaacaga ttaacaacag aaatacgaac tgcattcgag tttcgggaat actgcagtgc      3600
     ggtattcctt gacgttgcgc aggctttcga ccgagtctgg ctcgatggcc ttatgcataa      3660
     aatcagaacg ttactgccgg aaaacactca caggatactt gaatcgtacc tttacaacag      3720
     agccttcgcc gtgagatgca acactacaat atccgacgat tacacgatag aggctggagt      3780
     tcctcaaggt agcgcccttg gtccaactct atttctcctt tacaccgcag atattcccac      3840
     gaacgagcgg ctaactactt ctacattcgc agacgatacc gcgatcttaa gtcggtccaa      3900
     atgcccaatt caggcaacag cactactagc tgatcatctc gtggtagtgg agaggtggtt      3960
     atcagactgg cgtataaaaa taaatgcgca aaagtgtaaa cacataacgt ttactcttaa      4020
     cagacaaacg tgtcccccgc taactctgaa taacacgcca cttccacaag ctgacgatgt      4080
     aacgtacctt ggcgtccacc ttgacagaag acttacatgg cggagacata tcgaagctaa      4140
     gaaaattcat ctaaaactaa aatccaatag cctccattgg ctcataaacg ctcgctcccc      4200
     cctctgcccg gacttcaagg tcctgctcta caattcaacg cttaagccag tctggactta      4260
     cggctcccaa ttgtggggaa acgcgagcag cagtaacatc gacattatcc agcgagcaca      4320
     atcaaaaatc ctgagaacta tcactggggc accttggtat gttcggaacg acaacatcca      4380
     cagagatctt ggcattctac ccgtaaaaga tgaaatttca aaacaaaagg cgtcctacca      4440
     caccaagcta acttctcatc caaaccagct cgccaggggc ctagccaggg tttccaaccg      4500
     gacccgattg caacgaaatg accttccagc tcagcaatag ttattagagc ccttacatcc      4560
     cgcgtcagtc awcttgactg tcagatatag ctttttaatt taagatttta tatacttatt      4620
     gttagtctca attcagagaa gattcaataa ataaaatgca tatgtaaaca aaaaaaaaaa      4680
     aa                                                                     4682
//
ID   Jockey-2_DEu repbase;    DNA;    INV; 4697 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4697
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 948-948 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~96% identical to
CC   that of Jockey-6_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           219..1883
FT                 /product="Jockey-2_DEu_1p"
FT                 /translation="MSLNDVRTQRQREQDERRLSVQRNNAYFSFKATESNA
FT                 SSSQTRSITPNLTEFLNVESERARSCSPSLPSMSLQPKSAATSTAISLTTS
FT                 TVTTTTTATVTTARLTTSSASSANINTSAAALPEKENKNKENIKPAVQTGM
FT                 DRYIQIKRKLSPLNSQRKITRGNANIAAIETPSNSNRFKILADYEDDAEST
FT                 EVEKRKTKPPPIYIREKSSNVLVNKIIELIGKDNFHIIPLVKGNIQETKVQ
FT                 TKSEDNYRVLSKYLTDKKKNFYTYQLKSSKGLQVVLKGIESEVSPAEITKA
FT                 LQEKGFSAKTVFNILNRDRKPQPLFKVELEPEIKPLKKYEVHPIYNLQFLL
FT                 HRRITVEEPHKRNGPVQCANCQEFGHTRSYCKLRPVCVVCGELHDSAHCPA
FT                 SKDDHNSKKCGNCGGNHTANYRGCPVYKELKSRIHQRGITARTQNKQLIAS
FT                 RSNPEVFFSTAARSSLGPINSAKNVTYASALKSGLSTPASKSSLPQSAYQE
FT                 PNTAQQHQPPEQPKSNFEAMICSLQQSLTEFMSFMRTTMQDLMRNQNLLIQ
FT                 MLVSQQSK"
FT   CDS           1769..4558
FT                 /product="Jockey-2_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQSTTKPYGVYVVYAYNNARSDAKPKSINTNAGFTTI
FT                 QIMTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSETHLTNRYNFQLR
FT                 GYSFYGTNHPDGKAHGGTGILIRSRIKHHYHTKFAKNYLQATSINIHLNTG
FT                 KQLMLAAVYCPPRFTIAEDEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVT
FT                 PKGKQLYNAIIKAKNKLDYVSSGTPTYWPADPKKLPDLIDFAITKNIPKNM
FT                 ISAECLSDLSSDHSPVLFTLLRHPGTWDQPLKLTSHKTNWVKYRKYISSHI
FT                 ELSPHLSDEANVDSFVNSLESVLVSAARVSTPHTINTQCNQKKSNLQIEQL
FT                 VLEKRRLRRAWQFHRSPSAKQSLKHASRQLAQALQQEETYVHRRYIEQLST
FT                 NSTKHSLWRAHPTLSSPKETVMPIRNSTGGWARSDADRASTFANHLKNVFQ
FT                 PNPATNAFTLPTLSYEPQPQHEPIEFRPNEIVNIIKRQLNPKKSPGCDLIT
FT                 PKMIIELPYCAVCTLTQLFNAIAKLGHFPVRWKKSIIIMIAKPGKDHTIPT
FT                 SYRPISLLSCLSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVN
FT                 RITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKIKTMLPYSTHKIL
FT                 ESYLHDRKFVVRCNTAISDDYTVGAGVPQGSVLGPTLYVLYTADIPTSTRL
FT                 TTSTFADDTAILSRSKCPIQATAQLARHMVDVEKWLSDWRIKVNELKCKHV
FT                 TFTLNRQNCPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKRTHLKL
FT                 KASSLHWLINARSPLSLEYKIMLYNSVLKPIWMYGSQLWGNASNSNIDIVQ
FT                 RVQSKILRTITGAPWYVRNENIHRDLNIQPVKEVIAEQKVKYFTKLSVHPN
FT                 HLARGLTRLSNQSRLRRNDLPTQRPT"
XX
SQ   Sequence 4697 BP; 1597 A; 1188 C; 872 G; 1040 T; 0 other;
     atcggaccgt cgccgtatgc agacgtgtat ttttattgtg ctccggggaa aaaaaaaagt        60
     attcaataat atccaaaaaa gtgcagtgac tggtttcgta aaccaaaaca acgcgaaaag       120
     acgctttcag cgatgaaaat cgctaatgtt tatattgatt aattaattaa ttaatataaa       180
     acaaaacact aattctaaca aactcaacct cgactgcaat gagtttaaac gacgttcgca       240
     cacaacgtca acgtgagcaa gacgagagac ggctctcagt acaaagaaac aacgcttact       300
     tctctttcaa agcaaccgaa agtaatgcaa gctcttccca aacacggtca attaccccaa       360
     acttgaccga attcttaaac gtagagagcg agagagcgcg ttcttgctcc ccctcgctac       420
     catcgatgtc tctgcagcca aagagcgcag caactagcac cgcaatttct ttgacaacgt       480
     caaccgtaac aacaacaaca accgcaactg taacgacagc gcgattaacg acgtcatcag       540
     ctagcagcgc aaacattaat acttctgccg ctgcgctgcc cgaaaaagag aacaaaaaca       600
     aagaaaatat taagccggct gtgcagactg gtatggatcg ctacatccaa atcaaaagga       660
     agctaagccc cctaaactct caacgcaaaa taacccgtgg caatgctaac atagctgcaa       720
     tagaaacgcc ctctaactca aaccgtttta aaatcttggc agactatgag gatgatgccg       780
     aatctactga agtcgaaaaa aggaagacta agcccccgcc aatttacata cgagaaaaaa       840
     gttccaacgt tcttgtcaac aaaattatag agcttattgg caaggacaat tttcacataa       900
     taccactcgt aaagggcaac atccaggaaa caaaagttca aacgaagtct gaagataatt       960
     acagagtatt atcaaaatat ctcaccgaca aaaaaaagaa cttttatacg tatcagctaa      1020
     aaagcagcaa gggcctgcaa gtcgtactta agggcataga gtccgaagta tcgcctgcag      1080
     agataacaaa ggcgctacaa gagaagggat ttagcgctaa gacagtcttc aatatcctta      1140
     acagggatag aaagccgcag ccactcttta aggttgagct cgaaccagaa attaagcccc      1200
     taaagaaata cgaagtgcac cctatataca atcttcagtt cctgctgcac cgcagaatta      1260
     cggttgagga gccgcacaaa cgcaatggcc cggtacaatg tgcgaactgc caagaatttg      1320
     gccatacaag gtcttactgt aaactgcgcc cggtgtgtgt agtttgtggt gagcttcatg      1380
     actccgcaca ctgcccagcg agcaaagatg accacaactc aaaaaagtgc ggcaactgcg      1440
     gtggaaatca cactgctaac tatagaggtt gcccagttta taaggagctg aaaagtcgaa      1500
     tccaccagag gggaattact gcccgcaccc aaaataaaca gttgatagcc tccaggtcaa      1560
     accctgaagt cttcttctcg actgcagcca gatcctcact aggacccata aactctgcca      1620
     aaaatgttac atacgcaagt gctttaaaat caggactgtc taccccagcc tcaaaaagct      1680
     cattgccgca atcagcatac caagaaccga acacggctca gcagcatcaa ccgccagagc      1740
     agccaaaaag taactttgaa gctatgatat gcagtctaca acaaagcctt acggagttta      1800
     tgtcgtttat gcgtacaaca atgcaagatc tgatgcgaaa ccaaaatcta ttaatacaaa      1860
     tgctggtttc acaacaatcc aaataatgac ttccctacga atatctacgt ggaacgctaa      1920
     cggcgtttcg cagcataaac tcgagttagc gcaattccta ctagacaatc aaatcgacgt      1980
     aatgctgctt tcagaaacac atcttacaaa cagatacaat tttcaactac gaggatattc      2040
     attctatgga acaaaccatc cagatggtaa agcacacggc gggactggaa ttttaatcag      2100
     gagccgtatt aagcaccatt atcatacgaa atttgctaaa aactacctac aggccacatc      2160
     cataaatata cacctaaata ctggcaagca attaatgcta gccgccgtat actgcccccc      2220
     acgcttcacc atagccgaag atgagtttat gcagtttttc aactcactcg gagaccactt      2280
     catagcagca ggagactaca atgccaagca cacacactgg ggatctcgtc tcgtgactcc      2340
     aaaaggaaag cagctctata atgcaattat caaagccaag aacaagctcg actatgtttc      2400
     ttctggcaca ccaacatact ggccggcaga cccaaagaaa cttccggatt taatagactt      2460
     tgcgattacc aaaaacattc ctaaaaacat gataagcgcc gaatgccttt cggatctttc      2520
     atctgatcac tcgcctgtcc tttttactct actccgacat ccaggaacat gggatcaacc      2580
     attaaaactg acctcacata aaaccaattg ggttaagtac aggaagtata ttagctcaca      2640
     cattgagcta agtcctcacc tcagcgatga agccaacgta gacagttttg ttaattcact      2700
     ggaatctgta ctcgtctctg cagctcgagt ttcaacacct catactataa acacacaatg      2760
     caatcaaaag aagtcaaatc tacaaatcga acagctcgtc ctcgaaaagc gacgcttacg      2820
     tcgagcatgg caatttcaca gatcgccatc tgctaagcaa agcttaaaac atgcctcacg      2880
     tcaacttgct caagctctac agcaagaaga aacatatgtc caccgccgct acattgagca      2940
     attgtcaact aatagtacaa aacactcact atggagagct cacccaactc tgagctcacc      3000
     gaaagaaacc gtgatgccta ttagaaattc cacgggcggc tgggcgcgca gtgacgcaga      3060
     ccgagccagc acgtttgcca accaccttaa aaatgtcttc caaccaaatc ctgccactaa      3120
     tgcgtttact ttgccgactc tatcatatga gccccagcct caacatgagc caattgagtt      3180
     tcgcccaaac gaaatcgtaa acatcatcaa aagacaactg aatccgaaaa aatccccggg      3240
     ctgcgacctc ataactccca aaatgatcat tgagctccca tactgcgccg tttgcactct      3300
     cacccagctc tttaatgcca tcgcaaaact tggccacttt ccagtgagat ggaaaaagtc      3360
     aattataata atgatagcaa agccggggaa agaccacact atccccacgt catatagacc      3420
     tataagccta ctctcttgcc tatccaaact ctttgaaaaa tgcctaatga ctcggataaa      3480
     cacatacctg agaatccagg aaggaatccc gtcacaccaa tttgggtttc gtgaaaagca      3540
     tggaacaatt gagcaggtca accggataac atcagaaatt cgaaacgctt tcgaaaaacg      3600
     agagtactgt actgccatat ttttagatgt ctctcaagca tttgatagag tctggctaga      3660
     aggtctaatg tacaagatca agacaatgct cccctacagc acccacaaga ttttagagtc      3720
     ttaccttcac gacagaaaat ttgttgtgag gtgcaacact gctatatctg atgattacac      3780
     tgttggagct ggagttcctc aaggtagcgt gctagggcca acactatatg tcctctacac      3840
     agcagacatc ccgacaagca cacgtctaac aacatctacg tttgccgatg acacagctat      3900
     tcttagccgt tctaaatgcc cgattcaagc aactgcgcag ctagctcgtc atatggtcga      3960
     tgttgaaaaa tggctatcag attggcgaat taaagtgaac gaactaaaat gcaaacacgt      4020
     tacgttcact ctgaacaggc aaaactgccc gccgattacg ttaaacaaca ctctactccc      4080
     acaagcaaac gaagtaactt acctaggagt acatctcgac agaagactca catggcgccg      4140
     gcacattgaa gccaaaagaa cacacctaaa gctaaaagcc agcagccttc attggcttat      4200
     caacgcccgg tcacctctta gccttgaata taaaatcatg ctgtacaact cggtactaaa      4260
     acctatatgg atgtacggct cccagttatg ggggaacgcc agcaatagca acattgacat      4320
     tgttcagaga gttcagtcga agatcctgag aacaatcacc ggggcaccgt ggtacgttcg      4380
     caacgaaaac atacaccgcg acttaaacat tcaaccagtc aaagaagtga tcgcagaaca      4440
     aaaggtaaag tacttcacca agctatcggt gcaccctaac cacctggcga gaggtctaac      4500
     aaggttgagc aaccaatcac gccttcgtcg caatgaccta cccacccagc gaccgacctg      4560
     agggacgcgc aaccagaatg cagtcttagt atactgttag ttaaatttta atgttaagat      4620
     tcgtcaactt attgttagtc tcaaaattaa gagtagattc aataaataaa agcaaagcta      4680
     taaaaaaaaa aataaaa                                                     4697
//
ID   Jockey-2_DF repbase;    DNA;    INV; 4790 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4790
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 970-970 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           480..1973
FT                 /product="Jockey-2_DF_1p"
FT                 /translation="MHLTAAPALYSPANLNVNTTHKIANNDIQYRSKYQTN
FT                 KLQASNIVSATLHNICNNYNNDSSPNNNNYNKLLLQTVLFYNNNTDNTELN
FT                 RTSQQSLKRTRDRQSPGQVNEQTNSTKKQRSKNQRATQKTLKEYWLAEPRS
FT                 NNRFELLAHEQDDEAQSDNGTDRNLTAQIPQRKPKPPPIYVQNVENIHALT
FT                 TALNSLPETKFELKALSTNEIKIQPQESIHYTNILKLLKDKETKFYTYRPK
FT                 DQRGFKVILRHVHHATEKNEIINELADLGHTVLNIHNIQRNDTKKPLPLFS
FT                 IELKTQDNNKDIYKISHLLHCKVAFEPPHQKRIIPQCTNCQKYGHTRNYCT
FT                 RDPICVKCAGKHQSANCHLQITNSDKSQIKCALCSENHTSNYKGCMVYKAL
FT                 QLKKYPSLRQKEIPQIQTPPEIATKSTPDLINPKISYAEALQKNKPPTSTH
FT                 QTFLHNDEPFIPTNNNQQQEDMQELKTLMKQLIAQMSSMMNIVTILVSKLD
FT                 KQ"
FT   CDS           2065..4629
FT                 /product="Jockey-2_DF_2p"
FT                 /translation="MLISETHATDKTYISILDYNIFFTNHPDNKAHGGTAI
FT                 IIKNDLKCVEVECYKAANIQATTISISDQSGQLNISAVYCPPKFNNTKEQY
FT                 LDYLNSLGNRYLAGGDYNAKNAMWGSRLTNAKGRQLYEAIKANNSRTISTG
FT                 EPTYWPXDTKKLPDLIDFCITKNLTHQNIIIKSSLDLSSDHSPILVTIKST
FT                 PDLTSNTPSHNHKTNWNLFREILLDNMDTMASLKTNEELDSAIMHLNDNII
FT                 KALWQSTPALIPVITKRTPSHIKDKIKHKRQLRKIWQSTKHPDDKTKLNRA
FT                 TKDLKQTLQEYNESQIRRQLENLGTTTSTNYSLWKATKKLTKATIHKHPIK
FT                 TKKNSWARTNKEKADTLAEHFEEIFTNSMDNQNVELPSHLPKPNCAIRKTT
FT                 IYEIREQISKVKDKKTPGYDQISGKTLKELPDNTIRLIRDIFNAVIRLKFF
FT                 PSTWKIAQITAIPKPHKSAALVSSYRPISLLPILSKIFEKILLDRINPILI
FT                 EQNVIPPHQFGFRKKHSTVQQVHRVINKISEDFDNKKVCVAVYMDIAKAFD
FT                 KVWHTGLLHKLHNILPLNLFTILKSYLTNRYFYIKCDDECSDLMPVAAGVP
FT                 QGSVLGPILYLIYTADIPNPLTHGSMIATFADDTVLMASSYTEKRAANTLQ
FT                 EILTTTMSWFEKWGIEINKDKTQQVVYTKKKITTPTRIKIDDEILKLSTSA
FT                 KYLGLTIDSKLTWKKHIINKRNEVKSKFRQLHWLLGRQSNLNVSNKLLIYK
FT                 TIIRPIWTYGIEIWGTASKSNLIIIQRAQSKILRIITNSDRYTTNDHIHRE
FT                 LSTQTIPEIIKQSCIIHIQKLLAHQNQSLRDIPRREAQPRRLKGRTPTALA
FT                 HQ"
XX
SQ   Sequence 4790 BP; 1922 A; 1227 C; 742 G; 894 T; 5 other;
     gaatgtcagc atcattcgat agccttcaat tcgagttcga acgccgccgc gtatggacgt        60
     gtttttcaat cgctcagtga aaactcctat tttaccagca tccaactgcg aaaatatagg       120
     cccactagtg aacccaacaa accccagcga aaagacgctt tcccacaaaa aaaaaccctg       180
     tgtttacctt attaaaccta tcataaacaa ataagcaagc tccaaacaaa aatgagtgag       240
     cgttgcgctc aaactcagag cgcgcgccct cgctcaagca tcaacaacgc ttactttaca       300
     ataaagtcaa gcgccgacaa caacagtgca catagcaccc tctcagtgca gcctcagaga       360
     gcacgctctt gctctcccgc gcttttacaa gcaacgccna acaacancaa ccgcaaccaa       420
     aacggtncca caaacacacc agccgctctc cctanggagc aattaccttg gagcgagcaa       480
     tgcacctcac cgctgccccc gctctctact ctcccgccaa cctcaacgtc aacacaaccc       540
     acaaaattgc caacaacgat atccaatacc gcagcaagta ccaaacaaat aaactccaag       600
     cttctaacat cgtctctgcc actctccaca acatctgcaa caactacaac aacgacagct       660
     cccctaacaa caacaactac aacaagctac tcctccagac cgtcctgttc tataacaaca       720
     acactgataa taccgaatta aaccgaacaa gtcaacaaag ccttaaacgg actcgtgata       780
     gacagtcgcc tggacaagta aacgagcaaa cgaactcaac caaaaaacaa cggagcaaaa       840
     accaaagagc cactcaaaaa acactcaaag agtactggct agcagaacca cgctcaaaca       900
     accgctttga gttgctggcg catgagcaag acgatgaagc tcaaagcgac aatgggacag       960
     accggaacct aaccgcgcaa ataccacagc gaaaacccaa acctccaccg atctacgtac      1020
     aaaatgtgga aaatatccac gcactaacaa ctgcactaaa ctcactgccc gagacaaagt      1080
     tcgagctaaa agcactctca acgaacgaaa taaaaataca accgcaagaa agtatacact      1140
     acacaaacat ccttaagttg cttaaagaca aagagaccaa attttacacg tacagaccga      1200
     aagatcagag aggatttaaa gtaatactcc gccacgtaca tcatgctacc gaaaaaaacg      1260
     aaataattaa cgaactagcc gaccttgggc acacagtact aaacatccac aacattcaac      1320
     gcaatgacac aaaaaagccg ctacccctct tctcaattga acttaaaacg caagacaaca      1380
     ataaagacat atacaaaata agccatctat tacactgcaa agttgctttt gagccaccgc      1440
     accaaaaacg tataataccg caatgtacaa actgccaaaa atacggacac acaagaaact      1500
     actgtacgag agatcccatt tgcgtaaaat gcgctggtaa gcaccaatca gccaactgcc      1560
     acctacaaat aaccaactct gacaagagcc aaataaaatg cgctctctgt agcgagaacc      1620
     acacctccaa ttataaaggc tgtatggtct acaaagccct acaacttaaa aaatatccaa      1680
     gtctccggca aaaagaaata ccacaaatcc agaccccacc cgaaattgcc acaaaaagta      1740
     cacctgactt gatcaatccc aaaatatcat acgcagaagc cctacaaaaa aacaaacctc      1800
     caacatcaac ccaccaaact ttcctacaca acgacgagcc gttcatccca acaaacaata      1860
     accaacaaca agaggacatg caagaactga agacacttat gaaacaactg attgcacaga      1920
     tgtcaagcat gatgaacata gttaccatac ttgtatccaa acttgacaaa caataatttg      1980
     attatcgcag tctggaatgc aaatggacta tcgcgccata tcctagaaat aaagagcttt      2040
     ctacaagaaa accagattga cataatgcta atctcagaga cccacgccac agacaaaaca      2100
     tacatcagca ttcttgacta taacatattc ttcacaaacc acccagacaa caaagcccat      2160
     ggaggcacag cgatcataat caaaaatgac ctaaaatgtg tagaggtaga atgctataag      2220
     gctgcaaaca tacaagccac gacaatatca atctcggacc agtcgggaca actaaacatc      2280
     tcggctgttt actgcccacc caaatttaat aacacgaaag agcaatacct agactaccta      2340
     aattcgcttg ggaatcgata cctggcggga ggagactaca acgccaagaa tgccatgtgg      2400
     ggatcgcgcc tgacaaatgc aaagggaaga caactatacg aagctatcaa agccaataat      2460
     agccgtacaa taagtacagg agagccaact tactggccan ctgacacaaa aaaacttccc      2520
     gacttgattg acttttgcat taccaaaaac ttgacacacc aaaacataat aataaagtca      2580
     agcctggacc tatcatcaga ccactcacca atcttagtaa ccataaaaag cacaccagac      2640
     ctgacaagca acactccgag ccacaaccac aaaacgaact ggaacctatt cagggagata      2700
     ttacttgaca acatggatac catggcctcc ctaaaaacaa acgaagaact agactctgct      2760
     ataatgcact taaacgacaa cataattaaa gctctatggc aatcgacgcc ggctctgatc      2820
     cccgtaataa ccaaaaggac tccatcacac ataaaagaca aaatcaaaca taaacgccaa      2880
     ctaagaaaaa tatggcagtc caccaagcac ccagatgaca agaccaagct aaaccgtgca      2940
     acaaaagatc tcaaacaaac gctacaagag tacaacgaaa gccaaatcag gagacagctg      3000
     gaaaatctgg gaacaacgac atctacaaac tactccctat ggaaagcgac taaaaaactg      3060
     acaaaagcaa ctatacataa acatccaata aagacaaaga aaaactcatg ggcaagaaca      3120
     aacaaagaaa aagctgacac actggccgaa cactttgagg aaatttttac gaacagtatg      3180
     gacaaccaaa acgttgagct cccatcacat ttacccaaac ccaactgtgc aatcaggaaa      3240
     acgacgatat acgaaataag agaacaaata tcaaaagtca aagacaaaaa gacaccgggc      3300
     tatgatcaaa tcagtggtaa aacactaaaa gagctgccag acaatacgat taggcttata      3360
     agagacattt ttaatgcagt gataagactt aagttcttcc cttcgacgtg gaaaattgcc      3420
     cagattacag caatcccaaa acctcataaa agtgcagctc ttgttagctc atatagacca      3480
     atcagcctgt taccaattct atcaaaaatt ttcgaaaaaa ttttacttga cagaatcaac      3540
     cctatcttaa tagaacaaaa tgtgatccca ccccatcaat ttggttttcg aaaaaaacac      3600
     tcgacggtgc agcaagtgca cagagttatc aacaaaatat cagaagactt tgacaacaag      3660
     aaagtttgcg tagcagtata catggacatt gcaaaggcgt ttgacaaagt atggcataca      3720
     ggactactcc ataagcttca caacatccta ccacttaacc tattcactat actaaaaagt      3780
     tacttgacca acagatattt ctatatcaaa tgcgacgatg aatgttcaga tcttatgcct      3840
     gtggcagcgg gtgtacccca aggcagcgta ctaggaccaa tattatacct tatatacaca      3900
     gcagacatcc caaacccact gacccatggt tccatgattg caacctttgc tgacgataca      3960
     gtgctaatgg cctctagcta cacagaaaaa agagcagcaa acacacttca agagatctta      4020
     acaacaacaa tgtcatggtt tgagaaatgg ggcattgaaa taaacaagga caaaacacaa      4080
     caggtggtat acacaaaaaa gaaaataact accccaacaa gaataaaaat agatgacgaa      4140
     atcctgaaac taagtacaag cgccaaatac ctgggactca ctattgactc aaaactcacg      4200
     tggaaaaaac atataataaa caaacgaaac gaagtaaaaa gcaaatttcg acaactccat      4260
     tggcttctgg gaagacaatc aaacctaaac gtatccaaca agctactaat ctataaaaca      4320
     ataataagac caatctggac atatggaata gaaatatggg gaacagccag caaatccaac      4380
     ctcatcataa tacaaagagc ccagtcgaaa atattaagaa taataactaa ctcagacaga      4440
     tacacaacaa atgaccacat ccacagagag ctaagcacac agacgatccc agagataatt      4500
     aagcagagtt gcataatcca catccaaaaa ttacttgcgc accagaatca aagcctaaga      4560
     gacattccga gaagagaagc acaaccaaga agactaaaag ggagaactcc cacagcacta      4620
     gcgcaccaat aacagaataa aattaagtaa ataaaaataa gcgaaattaa aaagttatac      4680
     caacacaatg gtgttggtaa taagctaagc ccacatgttt gtcttccaaa aaaattactt      4740
     aatattctat tgaatagatg taatacataa aggggttaga aaaaaaaaaa                 4790
//
ID   Jockey-2_DGri repbase;    DNA;    INV; 6032 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.07, Created)
DT   10-JUN-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon from Drosophila grimshawi.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DGri.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6032
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1324-1324 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1030
FT                 /product="Jockey-2_DGri_1p"
FT                 /translation="AFGHSKNYCRRPFLCLKCAGGHATTTCSKGKEIEATC
FT                 ANCKGSHVASYKGCPVYKAARDKLLSSRSAVRGDLVKPFHRSAVSKSADAA
FT                 MPPPVKQQKQYQRTVVQQKQLVKKFVGQPVVKPVVRPVKKSVEQLISQSVK
FT                 QQVNQLAKQQVNNSVKESEMKAVKRSVKPQQQKQQPLGLKQMRKQQTDGIQ
FT                 SGLTYSQVARGVTAPIRERNPAMKHLQVFQHQLLLEQQQQQQVQQQQHQQQ
FT                 QQRQQQQQRQQQQLKPSQQQCQRCKQCDGQADGPFLQALQQNTLMIGEMGK
FT                 KMDTLLNILLSIVSSGTSNQQSLAFAAAPFSNHATLTPDCLVSDANDIADD
FT                 "
FT   CDS           1008..5429
FT                 /product="Jockey-2_DGri_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPMTLLMIRHTTTNSTSSVGTAVNIAAATAISDEEIT
FT                 PAKTLKIVYWNAAGIRNKILELEVFMQRSQIDVMMIIETRLDPGNRYDNMI
FT                 DDAKTLDIDGYTTYMAVSPRGRRSGGVAILVKHGIAHMAMQPIEYPSVQCM
FT                 PVALLPPSGSKDLVLVAPIYCPPLYNWSSRHFALLFEHIDSLCNVGNFILC
FT                 GDWNARHSWWGNVRACKRGSGLMEVVHKNKRLNVLATGGATHYPYDKKKRP
FT                 SALDFAVFGGLGSARLRTFSTIDLDSDHLPIHVDLATKGTSIDTRPGLRRT
FT                 ILPRNANIGKFQAYLNQRVLLNVEINSGADIEDAIDVFINNINEAAKFASP
FT                 PQLWQKQRSNTSCMGSRLDDETGKLLQLKRKYKREFLILGTPLARQRYRQV
FT                 QNRLRKALSLLKVNHLNHLFKQIDVKDRYRMQKLWRMTQTLKRQVEPNWPL
FT                 KARSDGDVGGPVWTRTNAEKAEEFVSHLERRFMPNYLNTEEDRKKVTDEWQ
FT                 LLELRQRRVDGDGGASGAPLPFRPVTLSEVTLEIKSLALKKSPGLDNISNH
FT                 VIKVLPVKSLLYLVLLFNSILRFGHFPQQWKCAGITMLLKPGKSTESVSSY
FT                 RPISLLSGFSKLFEKVLMRRLFECKDFASAVPSHQFGFRKEHSAEQQLARV
FT                 TQFILGAYERRQYCSAVFVDISEAFDRVWHAGLLYKLIRLLPPTLYRVLQS
FT                 YLSDRSFVVNTGGVRSRPGIICAGVPQGSVLGPILYTISSSDMPLPSLIRS
FT                 EQLSAFPSDCTMLLSTYADDTIVLCAHNGAREAIRGNQCFLNKFMAWANYW
FT                 CIKINVSKTAHVVFSRRRPAHSLKLPAIKLDGQIVEMQSKQRYLGLLLDRK
FT                 LILHSHVTQLCIRLRALCRKLDWLLGRSSMLHRSCKVVVYKQLMAPVWQYA
FT                 FPIWGALVSNTQMRRIETLQNVILRKILQVSWYTRNQVIRDSYNIKTVEDV
FT                 FQVASSRYASSLGTHPNMEARRLLFQPFVPVRLVRPRYTQQLDTHILPLQR
FT                 QFQIRPTLEEELPTLLLIEQREQNAVREARELDRLRQLCLQSSGRMSEMVI
FT                 NSLRRRYRDGLISRERVEALIAHQPPQIQNIILPQLRQPGEQQDAPAIWQL
FT                 QRKVHLPARFDGGRINALRRDFRLGRITREKLEQVIRGQPAQIKELILPSV
FT                 RAAGGDESVLIQDVPMQQQQALVHLNPVAIPLNRKCNFPLMDENRLCIRPR
FT                 MDMERLELPQLGQTMQSEVVVQHQSQHSPSNDVLELDVRLGDLRQQLEQDM
FT                 DDELLLEQQKVTKQPEQFQCRPMESTFFPDQLLSVRTQHHLLMQQFQATSV
FT                 KRPCSFPLMPSKRLCTHPYRHHIMPRRSNPEKRKIKRALPPAKRMCTCECV
FT                 DKLPDRTNPCMHVRPSNSILLPWQQQQSLEETLQEQRRRSFSLRKRPLHHL
FT                 WQDWRRQVLSPWRMRRQCANGVQQFTWVNDRCLIPVWRPLHNSRRLAHRKA
FT                 RPPRIWLSL"
XX
SQ   Sequence 6032 BP; 1507 A; 1338 C; 1587 G; 1600 T; 0 other;
     ggcatttggg catagtaaaa attattgccg gaggcctttt ctgtgcttaa agtgtgcagg        60
     aggtcatgcc actacaacct gcagcaaggg gaaggagatt gaggccacct gtgctaattg       120
     caagggatct catgtggcga gctataaggg ctgccctgtc tacaaggctg ctcgcgataa       180
     actcttgtca agtcgttcag ctgtgcgtgg tgatctagtc aagccatttc atcggtctgc       240
     tgtcagcaag tcagccgatg cagcaatgcc accaccagtc aagcagcaga agcagtatca       300
     acgcacagtt gtgcagcaga agcagttggt aaagaagttc gttggtcagc ctgttgtgaa       360
     gcccgtcgtt cggccagtta agaagtctgt ggagcaactg atcagccagt ctgttaagca       420
     gcaagtcaat cagctggcta aacagcaagt gaataattct gttaaggaat ctgagatgaa       480
     ggcagttaag cgttcggtaa agccgcagca gcagaagcag cagcccctcg gcttaaagca       540
     gatgcgtaag cagcagacgg atggcattca atctggtctg acatatagtc aagtagctcg       600
     aggtgtaact gccccaatcc gagaacgcaa cccagctatg aagcatctcc aagtttttca       660
     gcatcagctc cttcttgagc agcagcagca gcagcaagtt cagcagcagc agcatcagca       720
     gcagcagcag cgtcaacagc agcagcagcg tcaacagcag cagctgaagc ctagtcagca       780
     gcagtgtcag cgatgcaagc aatgtgatgg gcaagctgat ggcccgtttt tgcaagcgct       840
     gcagcagaat acgttaatga ttggagagat gggcaagaag atggataccc ttctaaatat       900
     tctcttgtcg attgtttcat ccggcaccag caatcagcag tcgttggcct ttgctgctgc       960
     gccattcagt aatcatgcta cactaacacc tgattgctta gtcagtgatg ccaatgacat      1020
     tgctgatgat tagacacacc actaccaatt caacatctag tgttggcacg gctgtaaata      1080
     tagctgctgc cacagccatt tctgatgaag aaatcacacc tgccaagaca cttaaaattg      1140
     tatactggaa tgctgctggg attcggaaca agattctgga gcttgaagtt ttcatgcagc      1200
     ggagccagat tgatgttatg atgattatag aaactcgatt agaccctgga aatagatatg      1260
     ataatatgat agatgatgcg aagaccttgg acattgatgg atatactaca tatatggcgg      1320
     taagtccgcg aggccgtagg agtggcggag tggctattct ggtcaagcat ggaattgcac      1380
     atatggccat gcagccgatt gagtacccgt cagtgcaatg tatgccagtt gcgttattgc      1440
     caccttctgg tagtaaggat ttggtgcttg tggctcctat atactgtccg ccgctgtata      1500
     attggtcatc ccgccacttt gctttgcttt ttgagcacat cgactctctg tgcaatgtgg      1560
     gcaatttcat tttatgcgga gactggaatg caaggcactc ctggtggggg aatgtgcgag      1620
     cctgtaagcg tgggtcggga ttgatggaag ttgtgcataa gaacaagcgt ttgaatgttc      1680
     ttgctactgg tggagctacg cactatccat atgacaagaa gaagaggcca tctgctctgg      1740
     attttgctgt ctttggtggt ttgggaagtg ctcggcttcg cactttctct acaatagatc      1800
     tggattcaga tcatttgccg attcatgtgg atttagcaac aaaagggaca agcattgata      1860
     cgcggccggg tctaaggcgc acaattttac ccaggaatgc aaatattggc aagtttcagg      1920
     catacctcaa ccagcgagtg ttgctcaatg tggaaattaa ttctggtgct gacattgaag      1980
     atgctattga tgtgttcatc aataacatta atgaggctgc gaaatttgca tcaccgccac      2040
     aactttggca gaaacagcgg agcaatacat cctgtatggg gtcaagactt gatgatgaga      2100
     ccggaaagct gctgcagctc aagcgtaagt acaagcgtga gttcctgatc ttgggtacgc      2160
     cgttggctag gcagaggtac agacaggtac aaaatcgcct gaggaaagcg ctgagcttgt      2220
     taaaggttaa ccaccttaat catttgttta agcaaattga tgtgaaggac cggtacagga      2280
     tgcaaaagtt gtggagaatg acacaaactt tgaagcggca ggtggagccc aattggccgc      2340
     taaaggctcg ttctgatggt gatgttggcg ggccagtctg gacgcgaacc aatgctgaga      2400
     aagctgagga gtttgtctct caccttgaac ggcgctttat gcctaactac ttgaacacag      2460
     aggaggatcg aaagaaggtt actgatgagt ggcagctcct ggagctgcgg cagcgacgtg      2520
     ttgatggcga tggcggtgcg tctggcgccc cattgccctt ccgtcctgtt actctcagtg      2580
     aagtcacttt ggagatcaag tcccttgcct taaagaagtc ccctggtttg gataacatta      2640
     gcaaccatgt tattaaggtg ctgccagtga agtcgttgct atatcttgtg ctgctgttca      2700
     attccatact gaggttcggg cactttccac agcagtggaa gtgtgctggg attacgatgt      2760
     tgctgaagcc tggtaaatct acagagagtg tctcctcgta tcgccccata agccttttgt      2820
     ctggcttttc gaagctgttt gaaaaagtgc ttatgcggag gctttttgag tgcaaggatt      2880
     ttgccagtgc cgtacccagt caccagtttg gatttcggaa ggagcatagt gcggaacaac      2940
     agcttgcccg tgtgacgcag tttatccttg gtgcatatga aaggcggcag tattgctctg      3000
     ctgtattcgt tgacatcagc gaagcatttg acagagtgtg gcatgcagga cttctgtata      3060
     agttgatcag gcttttgccg ccaactttgt atagagttct ccaaagctat ttgagtgatc      3120
     gtagctttgt cgtcaacact ggtggtgtga ggtctaggcc aggcataatc tgcgctgggg      3180
     taccacaggg cagcgtgctt ggtcctatcc tttacaccat ctcctcgtcg gatatgccgc      3240
     tcccatcgct gatcagaagt gagcaactgt ctgccttccc aagtgattgc actatgctat      3300
     tgtcaacgta tgctgatgac accattgttt tatgtgcgca caatggtgct cgggaagcaa      3360
     ttagagggaa tcagtgtttc ctgaataagt tcatggcgtg ggctaactat tggtgtatta      3420
     agatcaatgt tagcaagacg gcacatgttg tgttttccag acgacgtccc gcccattccc      3480
     ttaaattgcc agccattaag cttgatggac aaattgttga gatgcaatcc aagcaaagat      3540
     atctgggctt gcttttggat cggaagctta ttctccacag tcacgtcaca cagctctgca      3600
     ttaggctgcg agccctttgc aggaagcttg actggctgct tggaagaagt agtatgctgc      3660
     ataggagctg caaagtggtg gtttacaagc agttgatggc cccagtatgg cagtatgcat      3720
     ttccaatttg gggagctcta gtttcaaaca cacagatgcg ccgcattgaa actttgcaaa      3780
     atgtcatctt acgcaaaata ttgcaagtca gttggtacac caggaaccag gtgattagag      3840
     actcctacaa cattaagacg gtcgaggatg tatttcaggt ggccagtagt cggtatgctt      3900
     cttcattggg cacgcacccg aatatggagg ctcgaagatt gctatttcag ccgtttgtgc      3960
     cagtacgtct tgtgcgtcct aggtacactc agcagttgga tacgcacatc ctgccacttc      4020
     agcgccagtt ccagattcga cccacactgg aggaagagtt accgacactt ttgctaattg      4080
     agcagaggga gcaaaatgct gttcgcgagg ccagggaact ggaccggctg cgtcagttat      4140
     gcctgcagtc ttctgggaga atgagtgaaa tggtcataaa ctcgctgcgc cgtagatacc      4200
     gagatgggct catctctcga gaacgggtag aggcgcttat tgcacatcag cccccgcaaa      4260
     ttcagaacat aattctgcct cagctgcgcc agcctggcga gcaacaagac gctccggcta      4320
     tttggcaact gcagcggaaa gtgcacttac ctgctcggtt tgatggtggg agaatcaacg      4380
     cactccgtcg tgactttagg cttggccgca tcacacgtga gaaacttgag caagtgatca      4440
     gaggccaacc agctcagatt aaggagttga ttttaccctc ggttcgggct gcaggtggag      4500
     atgagtctgt gctgattcag gatgtcccca tgcagcagca gcaggcgctg gtgcacttga      4560
     atccagtagc aattcctttg aaccgcaaat gcaacttccc gcttatggat gagaatcggt      4620
     tgtgtatacg tccacgtatg gatatggaga ggttggaatt gcctcaactt gggcagacta      4680
     tgcaaagtga agtggttgtg cagcatcaga gtcagcattc ccccagtaat gatgtacttg      4740
     agttggatgt gcggcttggg gatttgcggc aacaacttga gcaggatatg gatgatgagc      4800
     tccttcttga gcagcagaag gtgactaagc aacctgagca gtttcagtgt agacctatgg      4860
     agtccacgtt ttttccggac cagcttttgt cggtacggac tcagcatcat ctgctgatgc      4920
     agcagtttca agctacctca gtcaagcggc cgtgtagctt tccactgatg ccctctaagc      4980
     ggttatgcac gcatccatat aggcaccata taatgccgcg cagaagtaat ccggagaagc      5040
     ggaagattaa gcgggcattg ccacctgcta aacggatgtg cacttgtgaa tgtgtagaca      5100
     aattgccaga tcggactaat ccatgtatgc atgtaaggcc ttcaaactcg attttgctgc      5160
     cgtggcaaca gcaacaaagt ctggaggaga ccctacagga gcagcggcga cgatcgtttt      5220
     ctttgcgtaa gcgtcccttg catcatttgt ggcaggactg gcgaaggcag gtgctcagtc      5280
     cttggaggat gcggcgacaa tgtgctaatg gtgtgcagca gtttacctgg gttaatgacc      5340
     gatgtctgat tcctgtttgg cggccattac acaactccag acgtttggca catcggaagg      5400
     cgcggccacc tcggatatgg ctaagtctct agttttcctt gactttcttc ttttctttca      5460
     tttcagtgca gttgtttctc aacctctgaa caattgatga aagaataagt tttgttttac      5520
     attcactttg atatggatgg acctccatgg tcatttattt ggcgccactc cattggcaga      5580
     tgcagctctt gttttggcat cttattaagt tatctggtcc tccatggtca cttattcgcg      5640
     gtgccatttt agctgcagga gtaatgcgct caatgggaca atattggtta tctggtcctc      5700
     catggtcttt ttcacttgcg atgacattcc agctgcacgt gcaaagcagt tttcccaacg      5760
     gtttcttgaa gttggtcctc gacggtcagg agctcgcggt gtcaccccat ctgcgtaatg      5820
     cagttggcaa aatgcagtag atgctgcagt caagaagctg agcaaattca ttttgttcag      5880
     agttgccata tcaaatttgt caaatgacat gtcagtaata ttttaaagat tgctatgttt      5940
     aagtaatgga aaaatatatt cgggctggct ggcgactgta tatttcagtc gtcagttgct      6000
     ttcattgttc cagcgtgaac acaactaaaa aa                                    6032
//
ID   Jockey-2_DHyd repbase;    DNA;    INV; 4917 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila hydei genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4917
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2451-2451 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..2060
FT                 /product="Jockey-2_DHyd_1p"
FT                 /note="zinc finger."
FT                 /translation="MDKNLSSNTQLRNKPIDYERMYQIAGKTPLELRTEFN
FT                 NNQRLSRADAQNLSTTTTTTATAAICSAIPSGSMASHAARFPTASSKIDAP
FT                 KLTGAATKLAAAQKMLKTKRKKPLSPHNSCKRANRDMVSHSASANMAKSTN
FT                 RFALLDTDMEVTSESDDDVNSKSTRARPTSDATDAVNNPQHEEPSNNKQPI
FT                 RSPKPPQIVVSITDLNDLFEVISEVTSIDNVAVKVNQGVTARIFPKDSDTY
FT                 RAIVSHFDTIGIEFHTYQLKEEKPYRIVVRGLHHSTLNKEIIASFKKYGFD
FT                 ALQVHNPRSRTNRDEKLNIFFINIKPCNKINEVYNIKTLCRQMVRVERMRK
FT                 SSEIVICTRCQDYGHTAKYCRRHPNCARCGGDHSTNLCTRSKDESPTCIHC
FT                 GGSHMASYKGCQWYQEFYRRSMGSSMIKKKQARTQQPQRKQQPTRQQPQQL
FT                 PNTSRIGTGGLSYASVARSGNASVQSRIHNIQAQVQIAKPTGNNSQQQHLX
FT                 DVQSLLEQQQQFLKWQQELQVQQQQQFLLWLQAQQREQQQQNKKNSERLER
FT                 LEKMVYDMASMLRQWTGDSSTHQLHNNASDSQ"
FT   CDS           2060..4777
FT                 /product="Jockey-2_DHyd_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNSLKILIWNVNGIAGKARDVELFAHNNNVDILLLNE
FT                 IRLNRGDTIKIYGYTFYPAYKPSSHNHGMGGAAIFVRSSLRHFPQRVIETP
FT                 NIQMSAIKVTTGLGDIEFCAIYCPPRNRIEERQFSDILASCGQRYLIGGDW
FT                 NARHWLWGDTYNSPRGRELAEAITARGSNILATGSPTRYPYISSHTPSCID
FT                 FALYHGIQDHLTNIYENWDLDSDHLALIAELHIDGSNIRPSPRLINNRTDI
FT                 TAFRQLLDDSIQLNSCLSSGEDIENAVDLLSENIYRAAAATTPLNPATRPN
FT                 YGIVLTREAKELIRTKRRLRRRAIRSQDPWDRILWNRAARQLRNLLRELRG
FT                 DFFEQKLASMDYTIDANYSLWKCTKSLKRQPFRQVPVRCPSGELAKCELEQ
FT                 ANAFGYHLEDRFTPFNYATIEQTMETHLNLETPLQMSLPIQPISIEEITEA
FT                 IQLLPKNKAPGIDKICNATLKALPTRALLYIELIFNAIIRLQVFPRQWKLA
FT                 AILMIHKPGKPEEDPESYRPISLLPALSKLWERTIANRINVIIRQSNILPD
FT                 HQFGFREGYGTVEQVHRLVKHILQAFDDSEYSNAVFIDMQQAFDKVWHDGL
FT                 LCKIKNLLPAPYYGLLRSYLEGREFKVKVKDTLSSTYPMRAGVPQGSVLGP
FT                 LLYSLYTSDIPSPSFQHMDAPSKALIATYADDVAIIYNSKSPIEASYGLQR
FT                 YLDTLADWCIRWNLKVNPLKTLNPCFTLKRLPMHTPPIQLAGITLQQPAQA
FT                 KYLGITLDRRLTFGPHLKAAVKKCRHRQQQLRWLINKKSTLPLRCKRAVYV
FT                 QCILPIWLYGVQIWGIAAKSNYKRVQVLQNRVLRQITNSPWYVRGSILHRD
FT                 LKLFTVEEQIGRHTSRYTDRLQRHRSLLARGLIPARPLRRLKRQGFARTMG
FT                 MV"
XX
SQ   Sequence 4917 BP; 1598 A; 1141 C; 1009 G; 1168 T; 1 other;
     gtcggacgtt ggctgtgaga ctgtcaacca ggaaaaaagt aaacgagtaa aatattttat        60
     tttatttaaa ttattttgtg tcgctaagat aagctcttcg agatcggtcg cgtcgcgcat       120
     tgtaaagaac tcactgatcc aatactattg ctaattcgct tgctaaaaat agcacaagtc       180
     ataaactttt cgggcgctgc cttgtgcagt gtcggcagcc agacaaaaaa aaaaaaagtg       240
     tactgagaca agactgcact cgttgcccgt ttgggctaaa cattcatcat attctaaatt       300
     atattatcat tatataaatc aaaatggata aaaacctttc ttctaacact cagcttcgaa       360
     acaagccgat tgattacgaa agaatgtacc aaatagctgg taaaactccg ttggaactaa       420
     ggactgagtt taataataac caacgcctat cacgtgctga cgctcagaac ctcagcacga       480
     caacaacaac cactgcaact gctgcaatct gcagcgcgat ccctagcgga agcatggcta       540
     gtcatgcagc ccgcttccca actgcctcct caaaaattga cgctccaaag ctcactggag       600
     ctgctacaaa actggcggcg gcccaaaaaa tgctgaaaac taagaggaag aaacctcttt       660
     ctccccataa tagttgtaaa agagcaaaca gagatatggt ctcacactcc gcttcagcta       720
     acatggcaaa atccaccaac agatttgctt tactagacac ggacatggag gtaacttccg       780
     aaagcgatga tgatgtgaat tccaaaagca caagagcacg cccaacgtct gatgcaactg       840
     atgcagtcaa caaccctcaa catgaggaac cgagcaataa caaacagcct atccgctcac       900
     caaagccacc gcaaattgtt gtgagtatca ctgatcttaa tgatctattt gaggtcatta       960
     gtgaagtcac tagtattgac aacgtggcag tcaaagtcaa ccaaggagtt acggcaagaa      1020
     tatttccaaa agacagcgac acttacagag ctattgtaag tcattttgat acaataggaa      1080
     ttgagttcca tacatatcag ctgaaggaag aaaaacctta cagaattgtg gtaagggggc      1140
     ttcaccatag cactttgaac aaagaaataa ttgccagttt taaaaaatat ggttttgatg      1200
     ctctgcaagt acacaaccca agatcaagga caaacaggga tgaaaaacta aatatattct      1260
     ttataaatat caaaccatgc aacaaaatta atgaagtata caatataaaa acactttgcc      1320
     gccaaatggt gagagtagaa aggatgcgca aaagttctga aatcgtcata tgtacacgtt      1380
     gccaggatta tggacataca gccaaatact gccgccgaca tcctaactgt gcgcgttgtg      1440
     gcggggacca ttccacaaac ctatgcacac gttcaaaaga tgaatcgcct acctgcattc      1500
     actgtggagg tagccacatg gcaagctaca aaggttgcca gtggtaccag gagttctata      1560
     gacgatcaat gggctcttca atgatcaaga agaagcaagc aaggacgcaa cagccacaac      1620
     gaaaacaaca accaactcgc cagcaaccgc aacagcttcc taatacttcc agaatcggaa      1680
     caggtggatt atcctatgcc tcggtagcaa gaagtggaaa tgcatctgtt cagagtcgca      1740
     tacataacat tcaagcgcaa gtccagatag ctaaacctac tggaaataac tcacagcagc      1800
     agcacctast tgacgtccaa tctctattgg aacaacaaca acagtttttg aaatggcaac      1860
     aagagctgca agtgcagcag cagcaacaat ttctcttgtg gcttcaggcg caacaacgtg      1920
     aacaacaaca acaaaacaag aaaaacagcg aacgtctaga acggctcgaa aaaatggtct      1980
     acgatatggc cagcatgcta aggcaatgga ctggggattc atcgactcac cagcttcata      2040
     acaacgcctc tgactcacaa tgaactcact aaagattctc atatggaatg tcaatggcat      2100
     tgcaggaaaa gccagagatg tggaactatt cgcgcacaac aacaacgtcg acattctatt      2160
     attaaacgag atcagactga atcgcggaga tacaatcaaa atttatggtt atacctttta      2220
     tccggcttac aaaccttcaa gtcacaacca tggtatggga ggagcggcta tattcgttag      2280
     aagttctctc cgccacttcc cacaaagggt tattgaaact ccaaacatac aaatgtctgc      2340
     aatcaaagtt accacaggat tgggagacat tgaattttgc gccatatact gtccaccaag      2400
     gaacagaata gaagaaaggc aattcagcga catactcgct tcttgcggcc aaaggtatct      2460
     tattggtggt gactggaatg cgcgacattg gctgtgggga gatacctata attcacccag      2520
     gggcagagaa ctagcagaag ccatcacagc cagaggctct aatattcttg caacaggatc      2580
     accaactaga tacccatata tatccagtca cacaccctct tgtattgatt ttgcattata      2640
     ccatgggata caggatcacc taacaaatat ctacgaaaac tgggacttag attctgacca      2700
     tttagccctc atcgctgagc tgcacattga tggttctaat atcaggccaa gcccaaggct      2760
     aataaacaac cgtactgaca tcacggcttt cagacaactg ttggatgact caattcaatt      2820
     aaattcgtgt ctgagctctg gtgaagacat cgagaacgcg gttgatcttc tttcggagaa      2880
     catatataga gctgctgctg ctacaacgcc gcttaatcct gcgactcgtc ctaattacgg      2940
     tattgtatta actagagagg ccaaagagct tatcagaaca aaaaggcgcc ttcggagaag      3000
     agcaattcga tcacaagatc cttgggaccg aattttgtgg aaccgtgcag caagacagct      3060
     acgtaacctt ttaagggagc tcagaggtga tttcttcgag caaaaactgg cttccatgga      3120
     ctacacaata gatgcaaact actctctatg gaaatgcaca aaatcgctca aacgacaacc      3180
     atttagacag gtacctgtcc gatgccccag tggcgaactt gctaaatgcg aattggaaca      3240
     ggctaacgca ttcggatacc atctagagga tcgttttact ccgtttaatt atgctacgat      3300
     tgagcagacc atggagacac atctcaattt ggagacccca ttgcagatgt ccctgcctat      3360
     tcagcctata agcatcgaag aaataactga agcgatccaa ctattgccga aaaacaaagc      3420
     acctggaata gacaagattt gcaatgctac gctgaaggct ttgcctacta gagcgctgct      3480
     ttacattgaa ctaattttta atgccatcat caggctccaa gtgttcccaa ggcaatggaa      3540
     attagctgcg atcttgatga ttcataagcc gggcaaaccg gaagaggacc cagagtcata      3600
     tcggcctata agcctactcc ccgctctgtc taaactttgg gagcggacca ttgccaatcg      3660
     cattaatgtc ataataagac agtctaatat cttaccggat caccaatttg gatttcggga      3720
     gggatacgga acagtggaac aagttcacag gttggtgaaa cacatcctgc aggcttttga      3780
     tgactcagaa tactccaacg ctgtcttcat tgacatgcag caagcgtttg acaaggtgtg      3840
     gcacgatgga ttgctgtgca aaataaaaaa ccttctacct gccccgtact atggcctctt      3900
     aaggtcttat ctagaaggcc gtgagtttaa agtcaaggta aaggatacac tttcgtccac      3960
     atatcctatg agagcaggtg tgccgcaggg tagtgttctt ggtccgttgc tgtactcctt      4020
     gtatacctca gatataccta gcccgtcctt tcaacatatg gatgctccct cgaaagccct      4080
     cattgcaact tatgctgatg atgttgcaat catctataac tctaaaagtc ctattgaggc      4140
     aagttatgga ctacagaggt atcttgatac tctcgctgat tggtgcatac gatggaatct      4200
     aaaagtcaac ccgctaaaaa cattaaaccc ttgcttcacc ttaaaaaggc tgccaatgca      4260
     tactccccca atccagctgg cgggaataac actacagcaa ccagcacagg cgaaatatct      4320
     tggaatcaca ctggacaggc gtctcacctt tgggccacac ctcaaagctg cggtgaaaaa      4380
     atgccgtcac agacagcagc aactgcgatg gctcatcaat aaaaagagca ccttgccgct      4440
     gagatgcaaa agagctgtct acgtgcagtg tatcctgccg atatggctct atggagtgca      4500
     aatctgggga attgctgcca aatccaatta taagcgggtt caggttttgc agaaccgagt      4560
     actgcgacag ataaccaact ctccctggta tgtacgcggc tcaatacttc acagagacct      4620
     taagctgttt actgtcgaag agcagattgg aagacacaca agcagataca cggacagact      4680
     gcaacgacac cgaagcctac ttgcaagagg tctaatccct gccagacccc taagacgact      4740
     taaacggcaa ggctttgcca gaacgatggg aatggtgtaa actgtctcct ttgaattcct      4800
     catattgtga ctggtttggc tctaattcca tatatataca tgtgttgtta aggtactaaa      4860
     tttgattgta caggttctac acttttaaaa tataaaaaac aaaaaaaaaa aaaaaaa         4917
//
ID   Jockey-2_DK repbase;    DNA;    INV; 4667 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4667
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1339-1339 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           637..1857
FT                 /product="Jockey-2_DK_1p"
FT                 /translation="MDRYIQIKRKLSPHNTVGNKPKINRVTKSYDPNNTNK
FT                 FSPLAAGENNEAELEQETQKQPKPPPIYIREKSSNALVNKIVAVVGDGNFH
FT                 VVPIIKGNICETKVQTKTEEHFRAVSNYLQEAKKSFYTYQLKSSKGLQVVL
FT                 KGIEPDVAPSEILEALKGKGFFAKNVSNIINKNKKPQPLFKVELEPDSKAL
FT                 KKNEVHPIYKLQFLLHRRITVEEPHKRNGPVQCTNCQEYGHTRTYCTLRSV
FT                 CVVCGDFHNSAHCPANKEDPNTKKCGNCGGNHTANYRGCVVYKELKSRMRR
FT                 ATATRQQNTQNVYFNSKTTPDVFFAKAARSSFGPLNAPTGISYAEALRTGM
FT                 QNPLPSNSVNAQQAPGQPQNNLESMMVTMQQSMMELMSFMKTTMQTLVQNQ
FT                 NMVIQLLVAQQSK"
FT   CDS           1864..4518
FT                 /product="Jockey-2_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSNLRISTWNANGVSRHKLELTQFLNENHIDAMLLVE
FT                 THLTSRYNFHIRGYTFHRTDHPDGKAHGGTGILIRERIKHHFHQRFATNYL
FT                 QATSIKVQSGNGNLCIAAVYCPPRFTISEGQFMDFYNSLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNALINVRNKLDYVSPGSPTYWPADPRKIPDLID
FT                 FAVTKNIPRNLINAKALPDLSSDHSPLLITLLQSPETTDRPYRLTSHRTNW
FT                 MKYKKYVSSHIELAPQLNTEADIDSXTSALEEVLVTAARISTPQQXDVQKI
FT                 KFKTNQQIEQLIQEKRRLRRAWQTNRSPCSKQRLNEATRKLSRALKQDAEK
FT                 AQLRYIEKLSPTSTKHPLWRAHPNLSSPAETITPIRKSSGCWARSDKDRAE
FT                 TFASHLQGVFQPNPAAXPFELPQXXTETESTPASFRPNEITKVIRELKPKK
FT                 APGDDLITQKMIIELPNCAIEVICKIFNGIISLGHYPTKWKKSIIIMIPKP
FT                 GKDHTIPSSYRPISLLSCLSKLFEKCLLKRIIPYLGAHNIIPAHQFGFREK
FT                 HGTIEQVNRITSEIRTAFEHREYCSAIFLDVSQAFDRVWLNGLMHKIKTLL
FT                 PVYTHKLLESYLYNRVFAVRCNATTSGTYSIEAGVPQGSALGPTLFVLYTA
FT                 DIPTSDQLTLSTFADDTAILSRSRCPVRATTQLANHLKVVEKWLSDWRIKI
FT                 NEQKCKHITFTLNRQTCPPLYLNSTQIPEVNVVTYLGVHLDRRLTWRRHIE
FT                 CKKIHLKLKASSLHWLINSRSPLCLDYKVLLYNSTLKPIWTYGSQLWGNAC
FT                 STNLDIIQRAQSKILRTITGAPWYIRNEHIHRDLGIPAVKNEIEKQKASYK
FT                 EKLSTHPNPLARDLIRVSRRSRLLRNDHPTQP"
XX
SQ   Sequence 4667 BP; 1530 A; 1259 C; 913 G; 947 T; 18 other;
     gcattcgacc ttcatcgagt gcagacgtgc ttacggacga ccgctacgcg gggtttattc        60
     tcgwagtgtt ttttcatggt gaaaaagtaa attcggaact ctaaactacg tactgtcagc       120
     taggccaagc cctacagtgc gtatgacata cggacactag tgcgtgagac gtgtttttga       180
     gctgcaaagt tcatttatat ggtgccacgc gtaacaagct caaaataatg agcggcgatc       240
     aaaagaatga gcgtagaacc tctgtaaacc aaagaaacgg tgttttctct tatttctcaa       300
     ctcgcgataa tcgaagcaga aaaaacgtct accaagccca acccggctct actgaccgcc       360
     gacggcacga gagcgcgctc ttgctccccg ccctactcat tccagctcct acatcttgga       420
     gctcccaatg ccaaacccca ccaccascgg cttcgatgga agacgcacca acaacaagca       480
     gagctgcaat ttctgcaaac gcatcaaaag caacagcaac aactaaacca acgaccaata       540
     ttgcgaaatc ggtgccaacg gccgcakcgc maaatcaatg gtaacaaaaa ccgtgagctc       600
     cgaaagcaac aagcggttcc ggccatacag actggcatgg atcgctacat ccaaattaag       660
     cgtaagctta gcccmcataa cacggttggt aacaagccta agatcaaccg tgtcaccaaa       720
     agctacgacc caaacaacac caacaaattt tctccgctag cagctggtga gaataacgaa       780
     gcagagctgg agcaggagac tcaaaaacag ccaaagcccc cacctatata tataagggag       840
     aaaagttcaa acgccctggt caacaaaatt gttgcggtgg tcggggacgg aaactttcat       900
     gttgttccga ttattaaagg gaacatttgc gaaaccaaag ttcaaaccaa aacagaagaa       960
     cactttcgag ctgtgtctaa ttacctgcag gaagcaaaaa agagctttta cacctaccaa      1020
     ctaaaaagca gcaagggact gcaagtagtg ctgaaaggaa ttgaaccaga tgtcgccccc      1080
     tccgagatac tagaagccct gaaaggcaag ggtttctttg ccaagaatgt tagcaacatt      1140
     atmaacaaaa acaaaaagcc gcaacctctt ttcaaagtcg aactkgagcc agacagtaaa      1200
     gccctgaaga agaatgaagt tcacccgatc tacaagttgc agttcctact gcatcgaaga      1260
     atcaccgtgg aagaaccgca caaacgcaac ggtcctgtgc aatgcacaaa ttgccaggag      1320
     tatggtcata caaggacata ctgcaccctt cggtcagtct gcgtagtctg tggagacttc      1380
     cacaactccg cacactgccc tgcgaacaaa gaagacccca acacgaaaaa atgtggaaac      1440
     tgcggaggaa accatacagc taactacaga ggctgtgtgg tctacaagga gctgaagagt      1500
     cgcatgcgaa gagcgacagc tacacgccaa caaaatacac aaaatgtgta ttttaattca      1560
     aaaactactc cagatgtatt ttttgccaaa gcagccagat cttcttttgg tccgctaaat      1620
     gcccccacgg gcatctccta cgccgaagct ctacggacag gtatgcaaaa tccactcccc      1680
     tcaaactcag taaatgctca gcaggcccca gggcagccac aaaacaacct ggaatccatg      1740
     atggtgacca tgcaacaaag tatgatggaa ctcatgtcat ttatgaaaac gaccatgcaa      1800
     acgctcgtcc agaatcagaa tatggtgata cagctgctcg tagcacaaca gtcaaaataa      1860
     tcaatgtcca atctacgtat atccacgtgg aatgccaacg gcgtctcacg gcataaactt      1920
     gaactaacac aatttctaaa cgaaaaccac atcgacgcca tgctactggt tgaaacgcac      1980
     ctcacaagca gatacaactt tcatataaga ggttatacct tccaccgcac agatcatcca      2040
     gatggtaaag cccacggcgg gaccggcatc cttatcagag aacgcatcaa acaccacttc      2100
     caccaaaggt ttgcaacaaa ttacttgcaa gctacgtcca ttaaagtgca gtcaggtaac      2160
     ggcaaccttt gcattgctgc tgtctactgc ccacctcgct ttacaatctc tgaaggccaa      2220
     ttcatggact tttacaactc wcttggagat cgwttcatag ctgcaggaga ttacaacgcc      2280
     aagcacacgc attggggatc ccgcctcgtg acccccaagg gaagacaact gtataacgct      2340
     ctcatcaatg tgagaaataa gctggactac gtttcccctg gtagccccac atattggcca      2400
     gcagacccca gaaagatacc cgatctaatt gacttcgcgg tgacaaaaaa catcccacgm      2460
     aatttaataa acgccaaggc ccttccagac ctttcttcag atcactcgcc gctgttgata      2520
     accctccttc aaagcccaga aactacggat cgcccctata ggctgacgtc gcacagaacc      2580
     aattggatga aatacaaaaa gtatgtgagt tcccacattg agctagcccc ccagctcaat      2640
     actgaagccg acatcgactc cwccacctcc gcwctggaag aggtacttgt gactgcagcc      2700
     agaatctcaa caccacaaca gamggatgtg caaaaaatca aattcaaaac gaaccagcag      2760
     attgaacagc ttatccaaga aaagaggcgt ctgcgacggg cgtggcaaac caatagatcg      2820
     ccatgctcaa agcaacgtct aaatgaagcc acacgcaaac taagccgggc cctgaagcaa      2880
     gatgccgaaa aagcacaatt aagatatatt gaaaaactct cgccaaccag cacaaagcat      2940
     cccttatgga gagctcaccc aaacttaagc tcwccggctg aaaccatcac cccgatwaga      3000
     aagtcatctg gttgctgggc ccgcagcgac aaagacagag ccgaaacttt tgcctcacat      3060
     ctccagggcg ttttccagcc gaaccctgct gcamatccat ttgaactacc gcaaawccam      3120
     actgaaacgg aatctactcc agcatcattt cgtccgaacg agataacgaa ggtcatcagg      3180
     gaactgaagc cgaaaaaggc tcccggcgat gacctaataa ctcaaaaaat gataattgaa      3240
     cttccgaatt gtgctattga ggtcatctgt aaaatcttca atgggatcat aagtctcggc      3300
     cattacccaa ctaaatggaa aaaatctata attataatga taccgaagcc cggaaaagac      3360
     cacacgattc catcatccta ccgaccaata agtctactat catgcttgtc caagttattt      3420
     gaaaaatgcc tactaaagcg cataattcct tatctgggag ctcacaacat catcccagct      3480
     catcaatttg gcttcagaga aaaacatgga actatcgagc aagttaacag aataacatca      3540
     gaaattcgca cagccttcga gcatcgagaa tattgcagcg caatatttct agacgtttct      3600
     caagcattcg accgcgtctg gctcaacggc ctcatgcaca aaataaaaac actcttgccg      3660
     gtatacacac acaaattact tgagtcgtat ctctacaaca gagtcttcgc agtgaggtgc      3720
     aacgcaacaa catccggcac ctattcaatc gaagctggag ttccacaagg aagcgcactt      3780
     gggcctaccc tatttgtcct atacacagcg gatatcccca caagcgacca gctaacacta      3840
     tccactttcg ctgacgacac tgcgatcctc agccgttcca gatgtccagt ccgggcaaca      3900
     acccagctcg ccaaccacct caaggtagtc gagaagtggc tatctgattg gcgtattaaa      3960
     ataaatgaac aaaagtgtaa gcacataacg ttcactctca acagacaaac atgccctccg      4020
     ctctacctga acagcacgca gatccccgaa gtcaacgtgg taacgtacct gggcgtccac      4080
     ctggacagac gcctaacatg gcgaagacac attgaatgca agaaaattca tctaaaacta      4140
     aaagccagca gcctccactg gctcataaac tcccgatcgc ccctgtgtct ggactacaag      4200
     gtcctgctct acaactccac actgaagcca atatggacgt atggctccca gctctggggg      4260
     aacgcgtgca gtaccaatct agacatcata cagcgcgccc aatcaaaaat cctgagaact      4320
     atcactgggg caccatggta tattcgcaac gaacacatcc acagggatct cggcattcct      4380
     gcagttaaga acgaaataga aaaacaaaaa gcgtcctaca aggaaaaact ctccacccat      4440
     ccaaatcctt tagcaaggga cttgatacga gtttccagaa gaagccgcct actacgtaac      4500
     gaccatccaa cccagccata attagtcagg gccatttact ctgtaccagt ctcatgactg      4560
     ctagttaggt agtattgtaa gatttgatac acttattgtt agtctcataa atgagaagat      4620
     tcaataaata aaagcaaaga cctaaaaaaa aaaaaaaaaa aaaaaaa                    4667
//
ID   Jockey-2_DMo repbase;    DNA;    INV; 1387 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1387
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1387 BP; 430 A; 330 C; 300 G; 327 T; 0 other;
     tgaactccac catgaactct ggagaagaca ttgagagagc tgttgattct ctagccgaaa        60
     acatatatat agctgcctct gcctcaacgc catcttcacc tggaatacgc ccaagaagtt       120
     atggcattgt cctcacaaga gaggctagag atttaattag aagaaagagg tgcctccgaa       180
     gaagtgcggt tcgatctcaa gatccttggg accgacttct gtggaatcga gctgcaagag       240
     agctacgcta cctccttagg gaaatcagaa gtgatttttt ttgagcagaa actcgcatct       300
     atggactata caattgacac taactactct atatggaaag cacaaaatcg ctcaagaaac       360
     aacccttcag acaggtcccc gtcagatgtc acgatggtga acttgcgcaa aatgattggg       420
     agcaggccaa tgtgttcgga taccatctcg cggagcgatt cagcagcttt gaatacgcca       480
     ctttagggca gagacgagag actcaactaa gcctacagac cccactacaa atgtccttgc       540
     ctattaagcc catagaggaa gtaacagaaa ttatacgctc attgccaaaa aacaaagctc       600
     cgggtattga caggatttgc aatgccacgc tgaaggccct gcctgcaaga gcgctactct       660
     atatagtttc aattttcaat gctatcgtca ggctgcaagt cttcccaaag caatggaaat       720
     tagcagcaat tacaatgata cacaagccag acaagccaga aacggatcca gagtcttatc       780
     ggccaataag tctcctacct tctctgtcta agttatggga gagaactatt gcaaatcgaa       840
     tctccgccaa tataagccag tgcaatacaa tgccggatca ccaatttggc tttcgagagg       900
     gacactggac ggtggagcag gtccatagat tgctaaaagc aggcgtatga cgatctagag       960
     ttctcaaacg ctgccttcat tgacatgcag caagcatttg acaaagtatg gcacgatggt      1020
     ctgctgtgca aaataaaaaa cctcttacca tccccatatt actgcctact aaggtcatat      1080
     ttggagggac gagaatttaa agtcagggta aaggacatat actcggccac ctatacaatg      1140
     agagcaggta cgccacaagg cagtgtccta ggtccactgc tcttttcctt atatatctcg      1200
     gatataccaa gccccacctc tcagcatatg gatgatcctg ccaaggctaa tattgcgaca      1260
     tatgccgatg acatcgcagt catttacaac tcaaaaagtt gcgcagaggc cagtgcaggc      1320
     ctacaaaggt atctcgaaac tcttgctaca tggtgtaaac gttggaacat aaaaattaat      1380
     ccgttga                                                                1387
//
ID   Jockey-2_DPer repbase;    DNA;    INV; 7406 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7406
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1649-1649 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           864..3005
FT                 /product="Jockey-2_DPer_1p"
FT                 /translation="MVRKPCPKSKKKTNLASSAPCSDNEVDLHSPPSLLMS
FT                 GXSQSDLRPLSCRSSSLADLTSDMPSTSAAAAAKLMQAPSTVKPLLAPPSA
FT                 MLTRASAATASAATACAAIPGAAAKATAPTRVAAAAAKRPSTSTVPSAARV
FT                 GAAQRTPVSTGAARAAAASAATCAPGSSATAVATNPTALAASVPSQMTLHE
FT                 ILKEQREKLAKERKVMAMLKAESEARNKKRTTTLASPITKVSAKMVKRMVS
FT                 SKEKRDPNQMSTTNYYNILSDADDMDVDADCSEGETEAEEPVPTNRPSTSQ
FT                 TTPPPAPTTAHATNAAATADAKIVRPAPIYIPNVTDIFPLLQCFDNAIGAG
FT                 TYDTRPAANRSLKVMCHTIDGHRALIRLLNEGQGVEHHTFRLKSERGMRIV
FT                 IRHLHRSTPTDWVREQLGRLGYKVRHIANILKRFTKEPLDLFEVELEPQDI
FT                 NNSIYELTAICSQRVKVEKPIRAPGVPQCHKCQMFGHSKNYCNRAVICLKC
FT                 GDKHDPKDCPKKREEVPKCANCXGPHVASYRGCVKYKEYCNKRRNGLDQTN
FT                 KMLNKLSMPTLPATQGLRRPRQPPVMNQQGFPALQQPSRRRARSGARAPAP
FT                 PAQMSSYADALRTRQPASHSQPLPGRQVWHSVPPTAATTGFQPVVSSQSVR
FT                 PSDELSQKLDYLITLLTQERIQHAAAAAESTQKLEGKMDILIAQMTKLTDC
FT                 LYASIQANSYARNV"
FT   CDS           2968..6240
FT                 /product="Jockey-2_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPAFRXIPMPEMYNNNPSNSTRHHSNLKIVFWNASGL
FT                 RGKTAELAAFACRHEVDVLMVSESHFKNSETFSVNGYCTYSANHPSGTGRG
FT                 GSLLLIRAGILHIALPNIATDHIQCASATLTLPDGGRLVVSSIYCPPMQEW
FT                 TEEDFLALFGQLGPRFVAAGDWNAKNSWWGNARACRRGGKLLRAVQESSCN
FT                 ILATGSPTHYPYNTRHTPSAIDFAVYKGVRDELLHISHLNDLSSDHLPMVI
FT                 QLSMSPAEAVNRRRLLPPGASISRFQSWLDSHIHLNTELRSAEDVDDAASI
FT                 LERNVLEAAEHATSGLRRPVRPRVQAEYQVSNRIRLMIATKRRLRNMLKRN
FT                 HDPAVRQLYNMLANRIHKELEADKARRADAIIGSIDPTDRYSMAKLWRLTN
FT                 GLKRQPAANLPVRKFCADGEDNADDPWCKSTEEKAESFARHLEQRFKPVLT
FT                 SAAADIRAIEESLEEFGSPGPNLRFRAITLPEIEAQVKVLKLKKAPGMDRI
FT                 DNRTIKALPKSALLYFALICNSSLRIGCFPNRWKHAAVSMIPKPGKPADKL
FT                 ASYRPISLLSGLSKLFERLILTRMMEADGFVEAIPNHQFGFRHVHAAEHQL
FT                 GRVSKFILSTYENNLYCSAIYMDIQEAFDRVWHAGLKHKMKQLLPAAIYRV
FT                 LSXYLDDRSFYVECTGGVKSGNKMIAAGVPQGSVLGPVLYNLYTHDMPLPR
FT                 DRGMLLATYADDTAILATGMNQLMATQKLNRFLXSISNWAKQWGITINASK
FT                 TVHIVHTLRTIQQPVDDLQPHIADQRISSVAVHSYLGVKLDAKLQFHPHIT
FT                 NVVTKVRARVQKLRWLLNTNSKLNLNTKVMLYKQMIAPIWQYTLAVWGPLA
FT                 TSAEFGRIQVEQNKTLRLICNAPWYVRNDTIHRDLEVDTVEAVYERACKRY
FT                 XEQMRSHHNIEAAKVVNDPYVPHRVTRPRYSEYLSKHLPKELAKHEWNRIE
FT                 MIPNQRPYTEEDQISHDRNLDEMRRMLIRMDRPVSPPXEYNYYTEVILPRR
FT                 RLLEPAPIATIDLTVSSRRQRLERLGLAMDAALNEIADTHSRHSDNGQVNG
FT                 STHTHTNTNAQENQPPPATGTRSTENNSQNVQQQ"
XX
SQ   Sequence 7406 BP; 2081 A; 2015 C; 1779 G; 1503 T; 28 other;
     gctctggctg ccccggacca gtgggcagag gagaaccaaa agaagacaaa waataaataa        60
     atagaagaca ataattagaa taaataacat atatgtatac ataatcgccc tccctgccaa       120
     tgtaaggcaa cgaaaatgta tccccttaat tatagtctac atttaaatct aaactaagtc       180
     tagagtatta tgctttaact ctacccactc cccctccccc ctttggcaaa cggactgttt       240
     gccaaggcgg agagaattat acaaaaagat gawtgcgccg gcagaactgc tggcaatgag       300
     atttcttgct gtaaaaaaaa gcactgtatt cgctgcctac ggctgctaaa cagcagcctg       360
     tagacagctg tatacgtaca tttatatatt aacagcccca atacattgta cctaaaatgc       420
     tatcagaagt atctgtacaa taaagtccac atagcgtaac gtagccctgg ctcccctaac       480
     ctgctggagc aggccaaggc tcgagccggg ttacgttacg ttatgwtagt tacgtatcgc       540
     ctccgctgca tacgacacat caaaaaaaat caaaacaaaa gttccgcaat aattaataat       600
     taaatcgcca aaatcgccac aaaatccccg aaataatatt gcacatgtat aaatatacac       660
     tgtgcaatat tccgtaaata cattccgggc aacgcgaagt gttgtgccgt gtacaagttt       720
     tttcaatacc cgcttacata accaaagtgc cggaagtgaa aaaacgtggg gtaggcttca       780
     gccgctgctg accacccccc ccccctccgc tatattaaca attgtgttta gctgcgcaaa       840
     aanaaagcta caaatancaa acaatggtac gtaaaccgtg ccccaaatct aaaaagaaga       900
     ccaatttggc ctcgagtgcc ccstgctcag acaacgaagt cgatctgcat tcccccccct       960
     cgctgctaat gtcgggnatn tcgcagagtg atctacgccc cctttcctgc cgctcgagct      1020
     cactggcmga cttgaccagt gatatgccat caacctcagc tgccgctgca gccaagttga      1080
     tgcaggcccc gtccactgtg aagccattgc tcgccccccc ctctgccatg ctaactagag      1140
     cctctgctgc tactgcctct gctgctactg cctgtgctgc cattcctggt gctgctgcta      1200
     aagccaccgc ccctactcgc gtagctgccg ccgcagctaa acgcccttca acatctacag      1260
     ttcctagtgc tgctcgtgta ggtgctgctc aacgcacgcc agtttctact ggtgctgccc      1320
     gtgctgctgc tgcctctgct gctacctgtg cccctggcag ttctgccact gctgtcgcta      1380
     ccaatcctac tgcccttgca gcatccgtgc cgagccagat gactctgcac gagatactca      1440
     aggaacagcg ggaaaaactt gcaaaggaga ggaaggtgat ggccatgctg aaggccgagt      1500
     cggaggcccg taacaagaag cggacgacca ccctggcctc gccgattaca aaggtgtcgg      1560
     ccaagatggt caaacggatg gtatcctcga aggagaagcg ggaccccaac cagatgagta      1620
     caacaaacta ttacaatata ctctctgatg ctgacgatat ggatgtggat gctgactgca      1680
     gcgagggaga gacggaagcc gaggaacctg ttcccacaaa caggccctct acttctcaga      1740
     ccaccccccc gcctgcccct actactgcgc acgctaccaa tgctgctgct actgctgacg      1800
     ccaaaattgt gcggccagcc cctatttaca ttcctaatgt tacagatatc tttcccctgc      1860
     tacagtgctt cgataatgcc attggcgctg gtacatatga taccaggccg gctgctaata      1920
     ggtctctgaa ggtaatgtgc cacacaatag atggacatag ggccctgatc cggctcctaa      1980
     atgaggggca aggtgttgag caccatacgt ttcgcctgaa gagcgagagg ggaatgcgta      2040
     ttgttatacg ccacctgcac cgctccacac ccacagattg ggtgcgtgaa cagctcggta      2100
     gactcggata caaggtgagg catattgcca atatacttaa aaggtttaca aaggagccac      2160
     tggacctatt cgaggttgag ctagagcctc aggacattaa caatagtatc tatgagctaa      2220
     cggcaatctg cagccaacgg gtcaaggtgg agaagcccat acgcgcgcca ggngttcccc      2280
     agtgccataa gtgtcagatg ttcgggcact cgaagaatta ctgcaaccga gcagttattt      2340
     gtttgaagtg cggcgataag catgacccca aggactgccc caagaagcgg gaggaggtgc      2400
     cgaaatgcgc aaattgtgan ggtccccatg ttgccagcta ccgtggctgt gtaaagtaca      2460
     aggagtactg caacaaaaga agaaatgggt tagatcagac caacaagatg ctaaataaac      2520
     tttcgatgcc taccttaccc gccactcagg gtttgcggcg tccccgccag ccacccgtca      2580
     tgaaccagca gggatttcca gcactgcagc aacctagccg ccggcgagcg cgctctggcg      2640
     caagagctcc tgctcctcca gctcaaatga gcagttatgc cgatgcactc cgcacacggc      2700
     aaccagcgag tcattcccag cctcttcctg ggaggcaagt atggcattcg gtgccaccaa      2760
     cagcggccac aactggattc cagcccgtgg tgagcagtca gagtgtccgt cctagcgatg      2820
     agctcagcca gaaactggac tacctcatca ccctgctgac tcaggagcgg atccagcatg      2880
     cggccgccgc tgctgaatct actcaaaaac tggaagggaa gatggatata ttaattgcac      2940
     aaatgacgaa gctaacggac tgtctatatg ccagcattca ggckaattcc tatgccagaa      3000
     atgtataata ataatcccag taactctacc cgccaccaca gcaatctaaa gattgtattt      3060
     tggaacgcct cgggactccg agggaagaca gccgaacttg cggcatttgc atgcagacac      3120
     gaagttgacg ttctgatggt ctctgagtct cattttaaaa actcagagac cttcagcgtc      3180
     aatggatact gtacttacag tgccaatcac ccatctggga ctggtcgtgg gggatccctg      3240
     ctcctaatca gagctggaat ccttcatatt gccctgccka atatagctac ggaccacatt      3300
     cagtgtgcat ccgctaccct gaccctgcct gatggtggcc gactggtggt ctcttccatt      3360
     tactgccccc caatgcagga atggactgag gaggacttct tggcattgtt tggtcagttg      3420
     gggccgagat tcgttgctgc cggcgattgg aacgcgaaga attcgtggtg gggaaacgca      3480
     agggcgtgta gaagaggcgg aaagctgctc agggccgttc aggaaagtag ctgcaacatt      3540
     ctggctactg gatctccnac ccactacccg tacaacactc ggcatacacc atcggcaatc      3600
     gacttcgcgg tctacaaggg cgtgagggac gagttgctgc atatctccca tctgaatgac      3660
     ctctcatctg atcatctccc aatggtgatt cagttgagca tgtctccagc ggaggcggtg      3720
     aacaggagac gcctcttgcc cccaggggcc agcatttcga ggttccaatc gtggctsgac      3780
     tcgcacatcc atctgaacac tgagctcagg tcagcagagg atgttgatga cgcagctagc      3840
     attctggaga ggaacgtgtt ggaggcagct gaacatgcca caagcggtct gaggaggccc      3900
     gtccgaccta gagtccaagc tgagtaccag gtcagcaatc gaattcggct gatgattgcc      3960
     accaagaggc gcctgaggaa catgctgaag cggaaccatg acccggcagt gcgacagctg      4020
     tacaacatgc ttgccaacag gatccacaag gagctggaag cggacaaagc cagacgcgcg      4080
     gacgcaatca ttggttcaat cgatcccacc gatcgctaca gcatggcaaa gctgtggaga      4140
     ttgaccaatg gattgaagcg gcagccagca gccaacttgc ctgtgagaaa gttttgcgcc      4200
     gatggagaag acaacgctga tgatccctgg tgtaagagca cggaggagaa ggcagagtcc      4260
     tttgcgaggc atctggagca gcgwttcaag cctgttctga ccagcgcggc agccgacata      4320
     cgagcaatcg aggagtctct tgaagagttt ggatcccctg gtcccaattt gagattcagg      4380
     gcgatcactc ttcckgagat tgaggcacag gtcaaggtac tgaagctgaa aaaggcccct      4440
     ggaatggaca ggatcgacaa ccggacaata aaagctctac ccaagtctgc tctnctgtac      4500
     ttcgcgctaa tatgcaacag ctccctcagg attggttgtt ttcctaacag gtggaagcac      4560
     gcggctgtta gcatgatccc caagccagga aaacccgccg ataagttggc atcttatcgc      4620
     cctatcagtc tgctttcggg tctgtccaaa ctgtttgagc gactcattct gaccaggatg      4680
     atggaagctg atggatttgt cgaggctatt ccaaaccatc agtttggctt cagacatgtg      4740
     cacgcggctg aacaccaatt ggggagagtc tcgaagttca tcctgtccac ctacgagaac      4800
     aatttgtact gctctgccat atacatggac atacaggagg cattcgaccg agtctggcat      4860
     gcgggcctga agcacaagat gaagcagttg ttgccggcag cgatatacag agtcttgtcc      4920
     mactacttgg atgatcggtc tttctatgtk gaatgcacag gcggcgtcaa gtcaggaaac      4980
     aaaatgattg cagcaggcgt tccacagggc agcgtacttg ggccagtatt atacaacctg      5040
     tatacacacg acatgccgct tcctcgcgac aggggtatgc tcctggctac ctatgctgac      5100
     gacacagcaa tcctggcgac tggcatgaac cagctcatgg ctacccaaaa gctcaaccgc      5160
     ttcctgcwca gcatctccaa ctgggcaaag caatggggca tcaccatcaa cgcctccaaa      5220
     actgtgcata tagtgcatac gttgcgcacg atccagcagc cagtggatga tttgcagccg      5280
     cacatcgccg accagcgaat cagtagcgtc gccgtgcact cctatctggg ggtcaagctg      5340
     gacgccaagc tgcagttcca cccacacatc accaacgtcg tcaccaaggt cagggcaagg      5400
     gtccaaaaac tgcgctggct cctgaacaca aacagcaaac tgaacctcaa caccaaggta      5460
     atgttgtaca agcagatgat cgcaccgatc tggcagtaca cattggccgt atggggtcca      5520
     ttagctacca gcgcagaatt tggacggatc caggtcgagc agaacaagac ccttcggctg      5580
     atctgcaatg cgccatggta cgtgaggaac gacaccatcc acagggacct ggaagtggac      5640
     acggtagagg cagtctacga gagggcatgc aaaaggtacw cggaacaaat gagatcccac      5700
     cacaacatcg aggcagccaa agtggtcaat gacccctatg taccgcacag agtcacaaga      5760
     ccccggtatt ccgagtatct tagcaaacac ctccccaagg aactcgcgaa gcacgaatgg      5820
     aaccgcatcg agatgatccc taatcagcgc ccgtacacgg aagaggacca aatcagccac      5880
     gacaggaacc ttgatgaaat gcggaggatg ctgatcagga tggatcgccc agtgtcgcca      5940
     ccacmagagt acaactatta caccgaggtc atactgccga gacggaggtt actggagcct      6000
     gcccccatag ccacgataga tctgacggtc agcagcagaa ggcagcgact ggagcgattg      6060
     ggcctggcaa tggatgcagc attgaacgag atagctgaca cacattcgcg gcacagcgat      6120
     aacggccaag tcaatggaag cacacacacg cacactaaca caaatgccca ggaaaatcaa      6180
     ccaccgccag caacaggaac aagaagcaca gaaaacaaca gccaaaatgt tcagcagcag      6240
     tgaagactta ccgccagcaa agtcccgttc agcccctaag agtgcaacaa ccatggctgc      6300
     cacattcgta cacagaacac acaaacgcac ggaaaagaaa acacagaagg tatatgcgag      6360
     cgcgacgaat gccacggaca aagaagacac cgaaatggcc gttacggaat gagcacactg      6420
     attaacatct tcccaaaccg accaactaac gacataggaa tggacagctg caaattgtta      6480
     aaaagagtag aagactcatg cgaccgactg ccaaaaacgc gtccgaccaa ggcgccgctg      6540
     ttcacaacta tgagcgttag catttctgct gcgcaatttc tgtctcctcc ttctcctaca      6600
     gatctcgaat tgccgccagt gaactccctg agaggaagag agaagacaac aacaactgga      6660
     aggtggtgga tttctgccat ctccactgcc gagacaactg actgctgcgc acaaccacac      6720
     acgtacatac acacatccac acagacgctc aacccaatgc tggccgcccc ggaccagagg      6780
     gcggaacagc aacgaaagaa gaaacgaagg aataaacaaa ataagcaata gctctggctg      6840
     ccccggacca gtgggcagag gagaatcaaa agaagacaaa aaataaataa atagaagaca      6900
     ataattagaa taaataacat atatgtatac ataatcgccc tccctgccaa tgtaaggcaa      6960
     csaaaatgta tccccttaat tatagtctac atttaaatct aaactaagtc kagagtatta      7020
     tgctttaact ctacccactc cccctccccc ctttggcaaa cggactgttt gccaaggcgg      7080
     agagawttat acaaaaagat gattgcgccg gcagaactgc tggcagatga gatttcttgc      7140
     tgtaaaaaaa agcactgtat tcgctgccta cggctgctaa acagcagcct gtagacagct      7200
     gtatacatac atttatatat taacagcccc aatagattgt acctwaaatg ctagtttaaa      7260
     agtatctgta caataaagtc cacatagcgt aacgtagccc tggctcccct aacctgctgg      7320
     ggcaggccaa ggctcgagcc gggttacgtt acgttatgwt agttacgtat cgcctccgct      7380
     gcatacgaca catcaaaaaa accaaa                                           7406
//
ID   Jockey-2_DRh repbase;    DNA;    INV; 4663 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4663
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1680-1680 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           193..1896
FT                 /product="Jockey-2_DRh_1p"
FT                 /translation="MSNANKILTSATGKATKPSRDRQQIQLDERRLSSARN
FT                 NAYISIDSSEATTKSTSLTATERARSLSPAILCSSSAAVTQSWSSQCPSPL
FT                 SLIDAPTTSACAPTSTVPSLTTATSTTTTTLTSAATQWPISTPQVKLSSTD
FT                 PLTNNTLVQTGIDRYVQIKRKLSPQKNVNSNLPKVPKTLGNTRTSENRFAI
FT                 LGETEEDKGQAPQVMKAVKPPPIYIRKHNSVDLINKLKQVIGPNHFYINTL
FT                 KRGNILEAKLQVNNEDNFRSVTRYLDNELINYYTYQLKSKKGLQVVLKGIE
FT                 STVAVAEIAEGLTEKGFDVKHIVNIVNRDKIPQPLFKIELAPETKPLKKNA
FT                 VHPIYNLQYLLHRRITVEEPHKRNGPVQCTNCQEFGHTRTYCTLRPVCVAC
FT                 GDLHCIEACLGNKEDPTLRKCSNCGGNHTANYRGCPVYKELKSRLNQRRSN
FT                 PFAAQHSAQPNIFTPSTTTPGVSFANALRYPGISQTSTAQPAALRPQPPIP
FT                 NLNDFPLLSQNGQTTTQPSTQQNQTLPPQTLSGLESTLATLANVMMTIQSS
FT                 LQELLRNQSLLMELLIKQKSV"
FT   CDS           1900..4572
FT                 /product="Jockey-2_DRh_2p"
FT                 /translation="MDSLRICFWNANGVSRHKNELLQFLNSHNIDIMLLSE
FT                 THLTNKNYFHIIGYIFHATNHPDGKAHGGTGILIKQRIKHHPLETFATNYL
FT                 QATSLRINLIGGPLTLSAIYCPPRFSIAENEFMNFYNSLGRCFIAAGDYNA
FT                 KHPHWGSRLINPKGRQLYNAIITPGNTLDFVSPARPTYWPTDPNKQPDIID
FT                 FAVIRRVSHRLINVKTLEELTSDHSPVLLCLSEQPQLLERPQHLTSNKTNW
FT                 LKYKKYVSAHIELDPEISSESDIDKSLKHLTDVMSSAAKHSTPEPSSTNPL
FT                 RTGRSSIQIESLLLEKRRLRRDWQTHRSPATKKRLNEASRKLSKALSTEKN
FT                 QAQRAYIAKLSPTGNKFPLWRAHPNMQPPIDPDWPIRSQTGAWARSDEERA
FT                 NTFAHHLENVFKPHPPSNQFTLPNVSLASPSSPVTLETSTILKAIKEHINP
FT                 KKAPGHDFISPKMIIELPACAVRCIAFIFNSILKWGYFPDQWKKSVITMIP
FT                 KPGKDKSQPSSYRPISLLPCLSKLFEKLLLVHLVTHLQNNRTIPLHQFGFR
FT                 EKHGTIEQVNRLTSEIRTAFEHKQYCSALFLDVSQAFDRVWIDGLVYKIKT
FT                 LLPENTHKLLESYLRNRVFTVRCKTFTSTIRNIEAGVPQGSVLGPILYILY
FT                 TADIPTSRQTLISTFADDTAIVSRSKCPKTATAHLKEHLVAVEKWLADWRI
FT                 KVNEQKCKHITFTLNLSKCPPLALNNKPVPQADEVTYLGIHLDRRLTWRKH
FT                 IEAKKTHLKLKASSLHWLMNYRSPLPLEYKVLLYNSCLKPIWTYGSELWGN
FT                 ASSSNIEIIQRVQSKTLRTITGAPWYIRNANIQRDLDINPVKEEIVSRKIK
FT                 YEARLSNHPNLLARQLNRLSYHSRLQRNDFPSLFNNIN"
XX
SQ   Sequence 4663 BP; 1560 A; 1278 C; 809 G; 1016 T; 0 other;
     gaaccaccga accgcgtaga cgtgtctttt tgctcgccct gccgaaagac ttccaaaaat        60
     ctacaaagtg accaccaaaa ataagaaaaa tagcgaaaag acgctggcag caatgccata       120
     tcccaaggtc aacatctcct tgcgattaaa actaaattta aaaccgatct agctaatcaa       180
     aaacaattaa aaatgtcgaa cgcaaataaa atattaacaa gtgcaaccgg taaagccacg       240
     aagccaagtc gcgatcggca acaaatacaa ctagacgaac gacggctgtc ttctgcacgg       300
     aacaatgctt acatttcaat tgactcatcg gaggcaacaa caaaatcaac gtcactgacc       360
     gctaccgaaa gagcccgctc actgtcacca gcgattttat gctcaagcag cgctgccgtt       420
     actcagtcgt ggagttcaca atgcccgtca cctctctctc tcatcgatgc accgactact       480
     tcggcttgtg cgcccaccag cactgtaccc tctcttacta cagcaacgtc aacgacaaca       540
     acaactttaa cgtctgcggc tacccagtgg cctatctcaa caccacaagt aaaacttagc       600
     tctactgacc ctcttacgaa taatactctc gtacagacgg ggatcgatcg gtatgtacaa       660
     ataaaaagaa agcttagtcc acaaaaaaac gtaaactcaa atttgccaaa agtaccgaaa       720
     actttaggca acacacgaac atccgaaaac agatttgcca tacttggcga gaccgaagaa       780
     gacaagggtc aggcgcctca agtcatgaaa gctgtaaagc caccgccaat atatattagg       840
     aaacacaaca gtgtcgatct gatcaataag cttaaacaag taatcgggcc taaccacttc       900
     tatatcaaca ccctaaaaag aggaaacata ttagaagcaa aactccaggt taacaacgaa       960
     gacaacttcc gttctgtaac aagatatctc gacaatgagc ttataaatta ctacacttac      1020
     caactaaaaa gtaagaaagg cctacaagtt gtacttaaag gtatagaatc gactgttgcg      1080
     gtagcagaaa tagctgaagg cctcacggaa aaaggcttcg acgttaagca catcgtgaac      1140
     atagtaaaca gggataaaat tcctcaacca ctgtttaaga ttgagctggc cccagagacg      1200
     aaacctctaa agaaaaatgc agtgcatcct atttacaatc tgcaatatct ccttcaccga      1260
     agaatcaccg tagaggaacc gcataagcgg aacggccccg tacagtgtac aaactgccag      1320
     gagttcgggc atacaagaac ctactgcacc ctgcgaccag tttgtgtcgc ctgtggagat      1380
     ttgcattgca ttgaagcatg cctgggaaac aaagaagacc ctactctgag gaaatgcagt      1440
     aactgtgggg gaaatcatac tgccaactac cggggctgtc ccgtctacaa agaactcaag      1500
     agccgcctaa atcagagacg cagtaatcca ttcgccgctc aacactctgc ccaaccaaac      1560
     atcttcaccc catcaacaac cactcctggt gtctcctttg ccaacgcact ccgctaccct      1620
     ggaatctcac aaacatctac cgcccagcct gcagcattgc gtccacagcc acccatacca      1680
     aacctaaatg attttccgct cttaagccaa aatggccaaa caacaactca accttctacg      1740
     cagcaaaacc aaactcttcc cccacaaaca cttagcggtc tagaatctac actagctact      1800
     cttgcaaacg tcatgatgac gattcaaagt tcccttcaag aactactgcg aaaccagagc      1860
     cttctaatgg aactgctgat caaacaaaag tctgtataaa tggactcctt aagaatatgc      1920
     ttctggaacg caaacggcgt ttcccggcac aaaaacgaac tcctacagtt cctaaacagc      1980
     cacaatatcg atatcatgct actttctgaa acccatctaa ctaataaaaa ctacttccat      2040
     atcatcggat atatattcca cgcgaccaac cacccggacg gtaaagcaca cggaggtacc      2100
     ggtatactca taaaacaacg cataaaacat catcccttgg agacattcgc tactaactac      2160
     ctgcaggcca catccctacg tataaaccta attggcggcc cacttaccct atccgccata      2220
     tattgccccc cacgcttcag tattgcagaa aatgagttta tgaatttcta caactcacta      2280
     ggacgctgct ttatagctgc cggtgattat aacgcaaagc atccccactg gggatctcgt      2340
     cttatcaacc ccaaaggccg ccaattatac aacgctatca tcactcctgg taatacgctt      2400
     gactttgtct caccagctag gcctacatac tggcccacag atccaaataa acaacctgac      2460
     attatcgatt tcgctgttat tagaagagtc tcgcacaggc tgataaacgt aaaaacctta      2520
     gaagagctta catcggacca ttcgccagtt ctcctctgtc tatctgaaca gccgcagctt      2580
     ctggaacgcc cccaacatct aacatcaaac aaaacaaact ggctgaagta caaaaaatat      2640
     gtaagtgcac acatcgaact tgatcctgaa atttcctctg aatctgacat tgataagtcg      2700
     cttaaacacc tcacggacgt aatgtcctct gccgccaaac attctacgcc agaaccctca      2760
     tccacaaacc cgctaagaac tggacgctca agtatccaga tcgagtctct cctacttgaa      2820
     aaacgtagac ttcgcagaga ctggcagact catcggtccc cagctactaa gaaaagactt      2880
     aatgaagcat ctcgaaaatt gtcgaaggcc ctctctaccg aaaagaacca ggcccaacgg      2940
     gcctacattg cgaaactatc cccgacgggt aataaattcc cactatggag agctcaccca      3000
     aacatgcaac caccaataga tcccgattgg ccaattcgat cacaaacagg tgcctgggcg      3060
     cgcagtgacg aagaaagagc taacaccttt gcccatcact tggaaaacgt cttcaagcct      3120
     cacccgccat ccaaccaatt cactctaccg aatgtctcgc tagcgtcgcc gtcctcccca      3180
     gttacccttg aaaccagcac aatacttaag gctattaaag aacacataaa cccaaagaag      3240
     gctcctggtc acgattttat ttctccaaaa atgataattg aattacctgc atgcgcagtc      3300
     agatgcatcg catttatatt taactcaata ttgaaatggg gctactttcc tgaccaatgg      3360
     aaaaagtctg tcattacaat gatcccgaag ccaggaaaag acaaatccca gccttcctcg      3420
     taccggccca tcagtctgct cccatgtcta tcaaagctat ttgaaaaact gcttcttgtt      3480
     catctagtaa cacatcttca aaacaacaga acgatccctc tgcaccaatt cggatttagg      3540
     gaaaagcatg gaactatcga acaggtaaac cgcttaacat ctgaaattcg cacggctttc      3600
     gaacacaagc aatattgcag tgccttattt ctggacgtat cacaagcatt tgatcgcgtc      3660
     tggatcgacg gtctggtata caaaatcaaa accctcctac cggaaaacac tcacaagttg      3720
     cttgagtcat acctcagaaa cagagttttc accgtgagat gtaaaacctt tacttcaacc      3780
     atccgtaaca tcgaagctgg agtaccccaa ggaagtgtgc ttggaccaat cttgtacatc      3840
     ctttacacgg cagacattcc aacaagccgc cagaccctca tctcaacctt tgctgacgac      3900
     actgccattg tcagccgctc gaaatgccca aaaacagcta cagcccattt aaaagaacac      3960
     ctggtagctg tagaaaaatg gctcgcagac tggcgtatca aagtcaacga gcaaaagtgt      4020
     aagcacatta catttacact aaacttgtcg aaatgcccac cactggcgct aaacaacaag      4080
     ccggttccac aagcagacga agtcacctat ctcggcatac acttagacag gaggcttacc      4140
     tggagaaagc atatagaagc aaagaagacc catttaaaac taaaggccag cagccttcac      4200
     tggctcatga actaccgctc cccccttcca ctcgaatata aagtactact gtataactcg      4260
     tgcttaaagc cgatctggac ctacggttcc gagctctggg gaaacgcaag cagcagcaat      4320
     atagaaatta ttcaaagagt acaatcaaag accctacgaa caataactgg agccccctgg      4380
     tacatccgca acgcaaacat ccagagagac ctggatataa atcccgtaaa agaagaaatt      4440
     gtttccagaa aaattaaata tgaagccaga ttatcaaatc acccaaacct gctagccaga      4500
     caactcaacc ggctaagcta tcattcccgt ctacagcgga atgatttccc atccctcttc      4560
     aataacataa attaacgtaa catagattaa gatttgaaaa cttattgtta gtctcttaag      4620
     taatagagaa gatccaataa ataagaataa agtataaaaa aaa                        4663
//
ID   Jockey-2_DSer repbase;    DNA;    INV; 4134 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4134
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2056-2056 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..1289
FT                 /product="Jockey-2_DSer_1p"
FT                 /note="zinc finger."
FT                 /translation="MNDDEDDKKVWSWQSVKPKPKAIKRPNQDSPILLKKK
FT                 IALDFAPSTSTNQFSLLSDSTPNNGNEDETETLDIITEDTLDESAKPPPIF
FT                 LSEVNDIKGMLAYLESKTKKELFFYKVQRDGHVRVMVKTIEEYRKLVKTLT
FT                 TDLVKFHTYQLKQERAFRVVIKNLHFSTDIDLIKQDVQSKGHTVRNISNIK
FT                 SRVTKEPLNLFFLDIEPNNKNLDIYKVKYIGNAVVNIEPPRKTKEIVQCYR
FT                 CQEFGHTKSYCAKTHRCVKCSSNHPSNICPKDKEQPAKCANCKEDHAASYK
FT                 GCKVYQELISKKFVSGLNHLKNTKDNNNKNDLGTSQSFAPFSNSTQQPKDF
FT                 QSYAQVAAGNSVSNASLEKIEQLLEKQFELTNNLLNMIMLLVNKLCK"
FT   CDS           1283..3970
FT                 /product="Jockey-2_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQVNLNLGIWNANGLSNHLNEITLFLKTNAIDVMLIS
FT                 ETHFTSKSYFQITGYDTVRADHPSDRAHGGAAIIVKRGLKFKIMDSTRENA
FT                 IQAATIEIKCMHADVSVTAIYLPPRFSIKEPDFKNFFERLGTKFIVGGDFN
FT                 AKHPWWGSRLTNPKGSELYKCIRNNNITTLSTGKPTYWPTDNQKIPDLMDF
FT                 VIFSGIPQSHMRVMENFDLNSDHSPIIATYSTIAHMLEKPYKVITASTDIN
FT                 AFKSYLDSAVSLDISLKTGEEIDYAVELFTNTIHKASYRNTNHAPNLQQPN
FT                 QLYLSTELRQKIQNKRNLRKRWQETHYPADKRLYNKAASELRQLLSNLRNE
FT                 SLAAYLRNLDPNSCNNEHNLWRATKYLKRPTKRNVNIRKGNGRWCRSDKEQ
FT                 AEAFAQHLHSVFQPNDINNPITETEIENFLESPCQMSLPIKSIKYEEVVTE
FT                 IKCLNNKKTPGPDKIDGITLKTLPPKCIRLLTLIYNAILRLDHFPSQWKCA
FT                 EIIMILKPLKTETELTSYRPISLLTIFSKVFEKILLKRMLPILDELSIIPE
FT                 YQFGFRRGHGTPEQCHRVINDIVSAFENKKYCTAAFLDVQQAFDRVWHNGL
FT                 LYKIKKWLPAPYYLLIKSYLTKRCFYVQQKSDSSTLNCINAGVPQGSVLGP
FT                 ILYTLYTADMPGTNTCTVATYADDTAVLATSTSKNEASELLQRELSLIEDW
FT                 FLRWKIKINSLKSVQITFSLRPGSCPNVALNGSPIPQTTCVKYLGMHLDRR
FT                 LTWKNHIKAKCQQLRLKTLKMSWLLSRKSETSLENKIRLYKAILKPVWTYA
FT                 LQLWGTASKSNIEILQRYQSKTLRQIVNAPFYVTNANIHKDLNIPTIKEEI
FT                 NKISKKYIDRLHNHENNLALNLVDNSLTVRRLKRYHILDLPDR"
XX
SQ   Sequence 4134 BP; 1579 A; 894 C; 679 G; 982 T; 0 other;
     tccaaactct aaacaaaaaa aaaaaaaaaa aaaataataa aataataaat tcaactataa        60
     acacaaaaca aaacaaatca gtggttgctg ataagcatca agaaagtgtt gttgttacca       120
     tgaacgacga cgaagacgac aaaaaggttt ggagctggca gagtgtaaaa ccgaaaccca       180
     aggcaatcaa gagaccaaat caagactctc caatattgct aaagaaaaaa atcgctctgg       240
     actttgctcc cagcaccagc accaatcaat tctctctcct aagcgacagc acgccaaata       300
     acggaaatga agacgaaact gaaacactgg atataataac tgaagacacc ttagatgaat       360
     ctgccaagcc accacctata ttcctatctg aagtcaacga tattaaagga atgctagctt       420
     atctcgagtc taaaactaaa aaagagctct tcttttataa agtacaacgc gatggtcatg       480
     tgagagtaat ggtaaagacc attgaagaat acaggaaact tgttaaaacc cttactacag       540
     accttgtcaa attccacaca taccagctta aacaagaaag ggcattcaga gtcgttatta       600
     agaacttgca cttctctacg gatatcgatt taattaaaca agatgtacag tccaaaggcc       660
     acactgtaag aaacattagc aatatcaaaa gtcgtgtaac taaagagcca ttgaatctgt       720
     tcttcttaga tattgagccc aacaataaga acttagacat ttacaaagtt aaatatattg       780
     gtaacgctgt tgttaacata gaacctcccc gcaaaactaa agagatcgtt cagtgctatc       840
     gatgccagga atttggacac acaaagtcat attgtgccaa aactcacagg tgcgtgaaat       900
     gttcttctaa ccaccccagc aacatttgtc caaaagataa agagcaacca gcaaaatgtg       960
     ccaactgcaa agaagatcat gctgctagct acaaagggtg caaagtctat caggaactta      1020
     tatcaaaaaa atttgtaagc ggactcaacc acctgaaaaa caccaaagat aacaataata      1080
     aaaatgacct tggtacatct caatcatttg ctccgtttag taattcgaca caacaaccca      1140
     aagacttcca atcatacgct caagttgctg caggaaatag cgtctcgaac gcgtctctag      1200
     aaaaaataga acagcttcta gagaaacaat tcgagctaac aaataattta cttaacatga      1260
     taatgttact tgtaaataag ttatgcaagt aaatctaaac ttaggaatat ggaatgccaa      1320
     cgggctttcc aatcatttaa atgaaataac tttattttta aaaacaaatg ccatcgacgt      1380
     catgctcatt tcagaaacac acttcactag caaatcttat tttcaaatta ctggatacga      1440
     tacagtaaga gctgaccatc cgtcagatag agctcatgga ggtgccgcaa ttattgtcaa      1500
     gcgcggcctt aaatttaaaa tcatggacag tactagagaa aatgccatac aggctgcgac      1560
     aattgagata aaatgtatgc atgctgacgt atcagtaaca gcgatttatc tcccaccaag      1620
     attctcaata aaagaaccgg attttaaaaa ctttttcgaa agactgggaa caaagttcat      1680
     tgtgggaggc gacttcaatg ccaaacatcc atggtgggga tccagactga caaacccgaa      1740
     aggatcggag ctatacaaat gcatacgaaa caataatatt accacattgt caactggaaa      1800
     gcctacatac tggccaacag ataatcaaaa aattccagat ctaatggact tcgtaatatt      1860
     ctctggaatt ccacaatcac acatgcgtgt aatggaaaac ttcgacctta actcagatca      1920
     ttctccaata atagcaacat acagcacaat agcccatatg ctggaaaagc cctataaagt      1980
     cattacagcc tctacagaca ttaacgcatt taaaagctat ttggactcag ctgtaagcct      2040
     ggacatttcg ttaaaaacag gagaagagat agactatgct gtggagcttt tcacaaatac      2100
     aattcataaa gcgagctata gaaacacgaa tcatgctcct aatcttcaac aaccaaatca      2160
     attgtacctt tcaaccgaac ttcgacaaaa aatacaaaat aaaagaaatc tgcgaaaacg      2220
     ctggcaagaa actcactacc ctgctgataa aagattatac aacaaggctg catctgagct      2280
     tagacaactg ctgtcgaact tacgcaatga atctctagct gcgtatttga gaaaccttga      2340
     cccaaactcc tgcaacaacg aacacaacct atggagggcg accaaatacc taaagagacc      2400
     aactaaaaga aacgtaaaca ttcgtaaagg caatggaaga tggtgcaggt ctgataaaga      2460
     acaagcggaa gcatttgccc aacatctgca ttccgtgttt cagccaaacg acatcaataa      2520
     cccaataaca gagactgaaa tcgaaaactt tcttgagtca ccctgtcaaa tgagcttgcc      2580
     tatcaaaagc attaagtatg aagaagttgt gacagaaatc aaatgcttga acaacaaaaa      2640
     aacaccaggc cctgacaaaa tagacggcat caccctaaaa actttaccac caaaatgcat      2700
     tcgacttctc actctcatat ataatgcaat tctcagacta gatcactttc caagtcaatg      2760
     gaaatgcgca gagatcatta tgatcctaaa gccactcaaa acagaaacag aactgacctc      2820
     ataccgtccc attagtctgt tgacaatatt ctcgaaagta tttgaaaaaa tactattgaa      2880
     gagaatgttg ccaattttgg acgagctttc catcattcct gaatatcaat ttggattcag      2940
     gagaggtcac gggacacctg agcaatgtca cagggtcatt aatgatatag tctctgcatt      3000
     tgaaaacaaa aaatactgca ctgctgcgtt tcttgatgta caacaagcgt tcgatcgagt      3060
     ctggcacaat ggtttattgt acaagataaa gaaatggcta cctgccccat actatctatt      3120
     aatcaagtca tatctgacta aaagatgctt ttacgtgcag cagaaaagcg actcatcaac      3180
     gctaaactgc attaacgcag gcgtcccaca aggaagcgta ctggggccaa ttctgtacac      3240
     cctatacacg gctgacatgc caggtacaaa cacatgcact gtagcaacat atgctgatga      3300
     tacagccgtt ttggctacaa gcacatccaa aaatgaagcg tctgaactcc tgcagcgtga      3360
     gctaagctta attgaagact ggtttcttcg atggaaaatt aaaatcaact ccctaaaatc      3420
     cgtccaaatc actttttcat taagaccagg cagctgccct aatgttgcac ttaacggctc      3480
     accaattcca caaactacat gtgtgaagta cctcgggatg catctcgacc gcagattaac      3540
     atggaaaaat cacatcaaag caaagtgtca gcagctcaga cttaaaacac taaaaatgtc      3600
     ctggttgtta agtcgcaaat cagaaacctc tctggaaaac aaaatccgcc tctacaaagc      3660
     catactaaag cctgtttgga cctacgcttt acagctctgg ggaactgcta gcaaatcaaa      3720
     tattgaaatt cttcagcgtt accaatccaa aactttgaga caaattgtca atgctccctt      3780
     ctacgtaact aatgcaaaca tccacaaaga cctcaacatc ccaaccataa aagaagaaat      3840
     aaataaaatc agtaaaaaat acatcgacag actccataac catgaaaaca atttagcctt      3900
     aaatctagtg gacaatagtt taacagtaag aagactgaaa agataccaca ttctcgatct      3960
     ccccgacaga taaattaaac tactgtaaat atgtaaaata tataatagca gagctcactg      4020
     gagaactgct atttctgtta gcttaacact cctcataaaa tttacctatt gttaattaga      4080
     cagattgtaa ataaataata aagaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa            4134
//
ID   Jockey-2_DSim repbase;    DNA;    INV; 1060 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit fly, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1060
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1650-1650 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. It is a fragment due to unsequenced
CC   gaps.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..922
FT                 /product="Jockey-2_DSim_1p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="TSVAVYFPPRYRITASHLSEFFEHFGPRFIAAGDYNA
FT                 KHSWWGSRANNPKGKTLFGYLQRHRLDCHSTGEPTHWPTNPLKTPDLLDFA
FT                 VSKGIGHAKISCTTNADLLSDHCAINVLINTPVLRKTPLRRLTGKYTDAAK
FT                 FASWMLSTVNPNPILNTPRNIDEAIGNLTRQMQNAAEFASPPPPKTARTPS
FT                 RDLHLWSPEIAALVTEKRRLRRVWFLTRNPRDKTALNHATKELKDKISSLR
FT                 QDSFLRFLEELSPGDQTTICGTSPATLNDQPKGFRSAQSRWILGPFGC"
XX
SQ   Sequence 1060 BP; 281 A; 330 C; 251 G; 198 T; 0 other;
     ggggatccca cacaatgtcc tgtcatcagg attgtcagcc cgcaaggaga tttagacatc        60
     tgtagcggtc tactttcccc ccagataccg cataacagca tctcacctca gtgagttctt       120
     cgagcatttt gggccccgct tcatagcagc tggagattat aacgccaaac attcttggtg       180
     gggatcgcgc gccaacaacc ccaaagggaa aactctgttt gggtacctgc aacgccaccg       240
     actggactgc cactccactg gcgagcccac tcactggcca acgaatcccc tcaagactcc       300
     agacctgctg gactttgctg tgtcgaaagg catagggcat gcgaagatca gctgcacaac       360
     aaatgctgac ctcctgtcag accactgtgc aataaacgtg ctaatcaaca cgccagtcct       420
     caggaaaacc ccgctcagaa ggctcactgg aaaatatacc gacgccgcca agttcgcgtc       480
     ctggatgctc tccaccgtca atccgaaccc catcctcaac acacccagga acattgatga       540
     agctatcggg aatctcacca ggcagatgca aaacgctgcg gaattcgcaa gcccaccgcc       600
     accaaagact gcgagaacac ctagcaggga cctccacctc tggtccccgg aaattgcggc       660
     actcgtgact gagaagaggc gtctcaggag agtttggttc ttgacgcgca atccaagaga       720
     caaaacagcg ctcaatcacg ccacaaagga gttgaaggac aagatctcca gcctacgcca       780
     ggactccttc ctcagattcc tcgaggaact ctctcccggg gaccagacca caatctgtgg       840
     aacgtcaccc gccacattaa acgaccagcc aaaaggtttc cgcagtgcgc aaagcagatg       900
     gatcctgggg ccgttcggat gctgaagagc agaagctttc gcgaacactt acacgcttct       960
     ctcgtcgact gctgcactgc gagacatgct gaacaccggt tccatagcca gctctcggtc      1020
     ccgtggacag tcgactgagg agtgccagaa tgtcatgaaa                            1060
//
ID   Jockey-2_DSuz repbase;    DNA;    INV; 4966 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4966
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 616-616 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           731..2077
FT                 /product="Jockey-2_DSuz_1p"
FT                 /translation="MGDNSNTGSMDVDNATVAAPKKGPWQKKGLKRSLPPG
FT                 SPESIRGVKKIIMEKREKSPSPTPSSSCSSSNTSPEEGEIIRPYIFPKKTI
FT                 KNKAAVNQDKKKDIGPSTSNRFASLPVESSNEKTVDNAELKTAPKPPPIFI
FT                 PDVINIGGFLNEMRTLANSDTFSYKATGRGNIRLMPKDSTTYRKIVAHLDN
FT                 CQXAFRTFQLKEERAFRIVVKGLHHTTPIEXVKEAFVNLGHNVRDAKNAVS
FT                 RVTKMPLSMFFINLEPAPTNKKVFEINRLCHAVVSIEEPKKFDEVVQCFRC
FT                 QAFGHTKRYCKLEYVCVKCGLSHDSLNCMKAKEDPPVCGNCGDXHTASYRG
FT                 CRIYIEAKKRFSPKPKAVTASSSNPAPRANFPASSAANQTGNQKFSYANVA
FT                 RAGAAENLNNNGQSPLDALEERMMRRMESMMNSMFNQFQNLVMTMLSNQNN
FT                 LKCP"
FT   CDS           2071..4776
FT                 /product="Jockey-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSINTQLIIWNANGLATSKPEVEHYIKTNQVDILLVS
FT                 ETHFTTRSHFTIPGYEIINALHPGDRIRGGASIIIRRGIQYEELEPVQLEW
FT                 MQCAKIHLITSLGKITIASAYLPPRYTLSQTDLSDVLLNLGPRFLIGGDFN
FT                 AKHTWWGSRTVNPKGSTLLRCIRALGCTVYSTGEPTYWPTDPAKIPDLLDF
FT                 AFSRGIDPTKVSTAACHDLASDHSMVKILYSNSYLRNPTAVKLIRRNTNIP
FT                 IFKSWLENHVDPQPVLESPIDIDEAVEYLTRQVHLAASIATPEVETTRTVH
FT                 TRGQRDNYLWSTELATKVSEKRRLRRVWQLSRRRSDKTIYNRACKDLNRML
FT                 LDLKSKSLEAYLADLEPCSADHKLWNATKYLKRPTRRIAPIKSSTGAWCRS
FT                 NQEKANAFADHLRSSFQPFDLCDPVDHQETLHFLDVACPMDLPIPEIDCEE
FT                 IKEELTSLKPTKSPGYDRLDATALKLMPPNCIENLKFIMNQSLRLGHFPTQ
FT                 WKCAEIIVIPKPGKPEAELGSYRPISLLPILSKILEKLFLRRLMPVLEEKH
FT                 IIPDHQFGFRRAHGTIQQCHRVVSCILDSFESKRFCSAAFLDVRQAFDRVW
FT                 HQGLLYKLKHTLPTPHYLLLKDYLENRRFYVRCNQQESPIHEVAAGVPQGS
FT                 VLSPILYSIYTADMPIPTGSLNMTCTYADDTAFLVSADSLPLAVXGLQQAL
FT                 LNIEPWLKRWNVIINAEKSTNISFSLRPGTSAPVMLNGAAIPQQLTAKYLG
FT                 LTLDSKLTWKEHIVGKAKLLMLKNRQMWWLLQRRSKLSTKNKLLLYNSILK
FT                 PTWTYGIELWGTAAISNLKKLERVENRILRQILNAPFYVRNTTIRRDLKLP
FT                 TVVEEAAKRSRRHLDKIEDHPNPLASRVLDVEPRRLKRRHPTDLPFRVP"
XX
SQ   Sequence 4966 BP; 1506 A; 1271 C; 1069 G; 1113 T; 7 other;
     gcgcattgtg ttcgcataat cattacgcgt gttttctgca cgaaaaaggt ggtaggaagg        60
     ccaaaaccgc gattttccac cccagacagt tcgagaacat tcgacgtgct gagagagagg       120
     cgctctctcg ggcgctccgt gtgtcgggcc aatttcggct gtaaaacgca tttttccttg       180
     ctaaaaatag cataaatatt cgcgcattgt gttcgcataa tcattccgtg tgttttctgc       240
     acaaaaaagt ggtaggaagg ccaaaatcgc gattttccac cccagacaat tcgagaacat       300
     tcgacgtgct gagagagagg cgctctctcg ggcgctccgt gtgtcaggcc aatttcggca       360
     ataaaactca tatttcactg ttgtaagaga gccgctctct ctcgagtggc gcctgcctta       420
     tctagataac gttttgacag cagcgcggtt cgcgtctgca ctaatttata tcggttcgtg       480
     tctccgcaaa ttggttggtt ttttggaaat cagctgattc attccgccag agggcgacta       540
     cttcaggatt catagcatac attcggcgac acctcatcgc tgtatcactc cgccagaggg       600
     cggcgactcc taatactttt gcctacattt cggcgacacc tcgtcgtcga ttttttgtca       660
     gcagaggtaa aggaaataaa tagttcactc acacagttag ccggctgtgc ttgttggtgg       720
     tgctgtcgcc atgggtgaca atagcaacac cggcagcatg gatgtggaca acgcgactgt       780
     agccgcaccc aaaaaaggcc cttggcaaaa aaaaggtctc aaaaggagtc tacctcccgg       840
     gtcgccagag tcaattagag gcgtaaagaa aatcatcatg gagaaacggg aaaaatctcc       900
     cagccctacc ccgagctcat cgtgctcctc aagcaacacg tcacctgagg aaggtgagat       960
     aattcgccct tacattttcc ctaaaaagac cataaagaat aaggctgccg tgaatcaaga      1020
     caaaaagaag gatataggtc ctagcacctc aaatcgtttc gcttctctgc ctgtagagag      1080
     cagcaatgaa aagaccgtcg ataatgccga acttaaaaca gcacccaagc cccctccaat      1140
     ttttatcccg gatgtaataa acattggcgg atttttaaac gaaatgcgca cattggcgaa      1200
     ttccgatact ttctcttaca aggcaacggg aagaggcaac atcaggctga tgccgaagga      1260
     cagcaccact taccgaaaaa ttgttgccca cctggacaac tgtcaawwmg ctttccgtac      1320
     mttccaactt aaggaagagc gagctttccg cattgttgtt aagggactac accacactac      1380
     accaattgag gakgtcaagg aagcctttgt gaatctcggc cacaatgtgc gtgatgctaa      1440
     aaatgcagta tcaagggtaa ctaaaatgcc attgtcgatg tttttcatta accttgaacc      1500
     agctccaaca aacaagaaag tcttcgagat caacagactg tgccatgccg tcgtctccat      1560
     cgaggaacca aaaaagttcg atgaggtggt acaatgcttc cgctgccaag ctttcgggca      1620
     tactaagagg tactgcaaac ttgaatatgt ctgtgttaaa tgcggattat cacacgactc      1680
     cctgaattgc atgaaggcaa aggaagaccc acctgtgtgc ggaaattgtg gtgacgawca      1740
     caccgcctcc taccgcggtt gtaggatcta catagaagcc aagaagcgct tcagccctaa      1800
     gcctaaggca gtaactgctt cttcatccaa tcctgctcca cgcgcaaatt tcccagcgag      1860
     cagtgccgcg aatcagacag ggaatcagaa attcagttac gccaacgttg ctagggctgg      1920
     agcggctgaa aacctcaaca ataatggcca gtcccccctt gatgccttgg aggagagaat      1980
     gatgcgcaga atggaatcaa tgatgaactc catgttcaat cagttccaaa acttagtgat      2040
     gacaatgctc tccaatcaga acaatcttaa atgtccataa acacccaact tataatatgg      2100
     aatgcgaacg gcttggctac gagcaagcct gaggtcgaac attatataaa gactaaccaa      2160
     gtagacatct tactcgtgtc cgagacacac ttcaccacca gatcccactt taccattccc      2220
     ggctacgaaa taatcaacgc attgcaccct ggcgaccgga tacgtggagg agcctctatt      2280
     atcatcagac gcggcattca atacgaggag ctcgagcccg tacaactgga atggatgcag      2340
     tgtgcgaaaa tccacctcat aacgtcgcta ggcaaaatta ccatcgcctc cgcatacctc      2400
     cctccaagat acacattgag ccaaactgat ctgtctgacg tactattgaa tctgggtcct      2460
     agattcttaa tcggaggcga cttcaacgca aaacatactt ggtggggatc acggaccgtc      2520
     aacccgaaag gaagcacact tctcagatgc atcagggcac tgggttgcac cgtctactca      2580
     actggagagc ctacctactg gcccaccgac ccagccaaga ttccggacct cttggacttt      2640
     gcatttagca gaggaattga ccccacaaaa gtatctacgg ctgcatgcca tgatcttgca      2700
     tcggatcaca gcatggtcaa gattttatat agcaactcct atctgagaaa tccaacggca      2760
     gtcaagctca tcagacggaa tacaaacatc ccgattttta aatcttggct agaaaatcat      2820
     gtagaccccc agccagtact agaaagtccg atagacatcg acgaagcggt ggagtacctc      2880
     accagacagg tccacctggc agcaagcatc gccaccccag aagttgaaac tacacgaacg      2940
     gtgcacacca gaggccaaag agacaactat ctctggtcaa ccgagctggc aacaaaggta      3000
     agcgaaaaac ggcgtttgag gagggtctgg cagttaagta gaagacggtc ggacaaaacc      3060
     atctacaaca gggcttgtaa agaccttaac aggatgctcc tagacctaaa aagcaagtct      3120
     ctagaagcct acctcgcgga ccttgaaccc tgtagtgcag accacaagct ttggaacgca      3180
     actaagtatt tgaagcgacc cacacggagg atagctccta taaaatcatc gactggagcc      3240
     tggtgtcgct caaaccagga aaaagcaaac gcctttgccg accacttaag gagtagtttc      3300
     cagccattcg acctgtgcga cccagtggac catcaagaga ctcttcattt cctggatgtg      3360
     gcttgtccca tggacttgcc cattccagaa atcgactgtg aggaaataaa ggaggagtta      3420
     acatcactca aaccaacaaa gtctcctgga tatgatcgtc tagacgccac tgctctgaag      3480
     cttatgccgc cgaactgcat tgaaaacttg aagttcatca tgaaccaaag tctaagactc      3540
     ggccatttcc caacacaatg gaaatgtgca gagattattg tcatccccaa accaggtaag      3600
     cctgaggccg aactgggatc ttacaggccc atcagtctgc tgccaatcct ctccaaaatc      3660
     ttggaaaaat tattcctgag gagattgatg cctgtgctag aggaaaaaca tatcatccca      3720
     gatcaccaat ttggcttcag gcgagctcac gggaccattc aacagtgcca cagggtagtg      3780
     agctgcattt tagactcctt cgagtctaaa aggttctgct ctgcagcatt cttagacgtc      3840
     aggcaagctt tcgacagagt ctggcaccag ggcctattgt ataaattaaa gcacaccctg      3900
     cctactcctc attacctact tttgaaggac tatcttgaaa acagaaggtt ttatgtaaga      3960
     tgtaaccagc aggagtcgcc catccacgaa gtggccgctg gagtccccca aggcagtgta      4020
     ctcagcccaa tattgtactc aatatacacc gcggatatgc ccattcccac gggtagtctc      4080
     aacatgacct gtacatatgc tgacgacacg gcgtttttag tctccgcaga ctccctgcca      4140
     ctggctgtgc awggcctgca gcaagctctg ttaaacatag aaccgtggct taaaagatgg      4200
     aacgtcatca taaatgcaga gaagtcaacg aatatatctt tctccttacg accaggtaca      4260
     tccgcaccgg ttatgctgaa cggagcagcc atcccgcaac agctcactgc aaaatatctg      4320
     ggtctgaccc tggattctaa actaacgtgg aaggaacata tcgtgggcaa agcaaaactc      4380
     ttgatgctaa aaaacagaca aatgtggtgg ctactacaaa gaaggagtaa attatcaact      4440
     aaaaacaaat tactgctata taacagcatc ttaaaaccaa catggacata tggcatagag      4500
     ctttggggca ctgcagctat ctcaaacctt aagaaattag aaagagtcga aaacagaata      4560
     ctacgccaaa ttttaaatgc ccctttttac gtgagaaaca ccacaattag gagggatctt      4620
     aagctcccca cagtggtaga agaggcggct aaacgcagca gacggcacct agacaaaata      4680
     gaagaccacc caaacccact cgcttccaga gtgctcgacg ttgaacctcg ccgattaaaa      4740
     agacgacacc ccacggacct gccgttcagg gtcccctaaa tgatgcaatt acatacacgc      4800
     aaacacatgt aatacacccc cacatatttc cactaatact cctcactaca taagctttat      4860
     gtaaactaac actgaattta ttgccacaaa atttaattta ttgcccacta gggcagacgt      4920
     aaatatatat attcaaacca aaaaaaaaaa aaaaaaaaaa aaaaaa                     4966
//
ID   Jockey-2_DT repbase;    DNA;    INV; 4871 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4871
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1704-1704 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..1994
FT                 /product="Jockey-2_DT_1p"
FT                 /translation="MSAADQDINVPLCDHVMNVDSCDGSSSPNLFITDNSN
FT                 ASTSKEFSRSSRGRGVRVTSVRSKEARSQKFDLERNLSIADTSYSSLDNLK
FT                 DVLEASADTLLNTEKDFASQHEFDNFNEGIHGASTPGHSTTSNLQFVSQEV
FT                 ADQLRCESVKRIRKRNELDPNHSKDASFGPIIKRFRNLKRKVHLEIFGSED
FT                 SDSPGEKYSGHGNDFALLSDEDIENPLPNDRIDTQSPPSEPLNSCQPPVTS
FT                 KSTITSSNSGGISQKSKGISGTPIPSSKAPKSEPRPPAFVIKGVTDVKQLM
FT                 NLIKAATTNIRFKITGPATVRVSPFDGDTYKLVQQLLWSNNIPFNSWQLKS
FT                 DRSFRIVVKGLHSSTDPEDIKADLGAAGHVVRNVYNPPGKNNGHRPNIFFV
FT                 ELESSTNNVKVYDIKSLAYQSITIVPPERRDEVVRCYXCQDFGHTKTYCFV
FT                 PPKCAKCGGDHESRSPVCPATSQDQFKCINCGSNHSAGYRKCPAFLEAIAR
FT                 RKSGTIKKQPXXKFVPAPLPAQSAWGPALPSPSTGSSTSKPMQRVTEPPPP
FT                 SAGFEILISRIDQMMSMMXKMMELLMNQFTGSSPSDASKIRRHV"
FT   CDS           1969..4734
FT                 /product="Jockey-2_DT_2p"
FT                 /translation="MRLRSGDMSSLGIRFSFWNANGVTGKSLELEHYLTAN
FT                 SIDVMLINETHFNSRSHFRIFGYDLLTANHPSDRLRGGAAILIRSHLQYSP
FT                 YSTNSTVKCQTAAITLSTDLGDIVIASIYCPPSFLWTAQDFGQLFSEFSNR
FT                 FIIAGDWNAHNQFWGCIRSSPRGVQLLDHITSSSLQVLATGGPTHFPSDAR
FT                 RNPTAIDFAIYKGISSNFLTVHESHELSSDHIPLEILLCASTSPRLTTPRL
FT                 LSRRANIGRFKDYLTILIENDESADLNCPLDIDTAVSDLTLKIQSAAAAST
FT                 AIGNRPAVPQPNNALSNTRVTALVRQKRSLRRRWMQTRHPQDLAIFKRADT
FT                 LLRKALYDAKSEFFVRKLSAIDPDADRGFELWKCTRGLKRQPLQKFPLLRS
FT                 DGTWANKDDEIAKEFADSLEERFKPFDLVTDEETAVTEAFDDVPSGPASQI
FT                 SPIDAEEVKDQIKRLKTNKAPGHDSIDGKVAKALPVAAISFLTRIFNAMIV
FT                 LSYYPEQWKHANVVMIPKKGVXPRCADSFRPISLLPTFSKIFERILLKRLF
FT                 SVHMFQDAIPNHQFGFRSLHNAAEQMHRVVNHILKAFEAKKYCCAVFLDVK
FT                 QAFDRVWHCGLLYKLKPILPPTYFDLLRSFLIGRTFQVDVRGSKSASRPIL
FT                 AGVPQGSVLGPVLYTIFTSDLPSPRGRNVLTATYADDTAFLATSALRREAT
FT                 DMVQDMLNEFEAWASRWNIAVNPAKSQHATFSLNRLNTYRLTLDGTPIKHS
FT                 DTVKYLGLTLDRRLTWKQHIVATCASVRQKAGKMRWLLRPGSGLSITAKTR
FT                 LFKATLMPSLHWGIHFWGTACNTSIKRIESCQSKILRHMINAPYYTRNTTI
FT                 FRDLKINPVCKSITNTAIRYRSRLVSHTNRLAFTLSRPMNRRRLKRLHPSD
FT                 NWILGRHACGKLIPDLDA"
XX
SQ   Sequence 4871 BP; 1313 A; 1138 C; 1003 G; 1407 T; 10 other;
     cagttccgac tttaatgtca agctaaccgg ttgtgtttat ctcgggatcc cgtgtttcaa        60
     aaaattttat aaaaattcgt tttatttatt tctttttatc tcttggttct gtttggactt       120
     cacgtcgtgt gacttgtgct ttcgtacttg gacttcatta acgcatcgcg tttgccggcc       180
     tcgcctgcat tggctggccg gccgccctgc tggtcgtcat catgtctgcc gctgatcaag       240
     atattaatgt ccctctatgt gatcatgtta tgaacgtgga tagttgcgat ggttcttcgt       300
     ctcccaattt atttataact gataattcaa atgccagtac tagcaaggag ttttcaaggt       360
     cgtctagagg tcgtggtgta agggtgacct ccgtcaggtc caaggaagct agatcacaga       420
     aatttgatct tgaacgcaat ttatctattg ctgatacttc atattcatcg ctagacaatt       480
     tgaaagacgt tctggaagct tcggcggata ctttgcttaa tactgagaaa gattttgctt       540
     ctcaacatga atttgataat tttaatgaag gaatacacgg tgcaagcaca cctggacatt       600
     ccactacttc aaatctacaa ttcgtcagtc aggaagtggc ggaccagttg cgttgcgaat       660
     ccgtcaaacg cataagaaag cgaaacgagc ttgaccctaa ccacagtaag gatgcttcgt       720
     ttggaccaat tattaagcgc tttcgtaatc ttaaacgcaa ggttcacttg gaaatatttg       780
     gatcggagga ctcggactct cctggtgaaa aatattcagg tcatggaaac gactttgccc       840
     tcttatcgga tgaagacatt gaaaacccac tccctaatga tcgtatagac acccagtctc       900
     ctccatcgga gcccctaaac tcctgccagc cccctgtgac tagtaagagt acaataactt       960
     ctagcaatag tggtggaatt tcccaaaagt caaagggtat ttctggtact cctattccgt      1020
     cgtctaaagc acccaaatct gaaccacgtc cgcccgcctt tgtgataaag ggcgttactg      1080
     atgtcaagca acttatgaat ctgatcaagg ccgccacaac caatataaga tttaagatta      1140
     ctggacctgc tacagtgagg gtatctcctt tcgatggtga tacatacaaa ttagttcaac      1200
     aacttttgtg gagtaataat attccgttta attcttggca attgaaaagt gatcgatctt      1260
     tcaggattgt cgtcaaaggc ctacattcgt ctacggatcc tgaagatatt aaggctgatt      1320
     taggcgccgc tgggcacgtt gtccgcaatg tttataatcc cccgggtaag aacaatggtc      1380
     acaggcccaa tattttcttt gttgagctag agtcatcgac aaataatgtc aaagtctatg      1440
     acattaaatc attggcttat cagtcaatta ctatcgtccc tcctgaacgc cgagatgaag      1500
     ttgttaggtg ttataantgc caggattttg gacacacaaa aacatactgt ttcgtgcccc      1560
     ccaaatgtgc aaaatgtggt ggtgatcatg agtctcgaag ccctgtttgc cctgctacgt      1620
     ctcaggatca atttaagtgc attaattgcg gttccaacca cagtgcaggc taccgcaaat      1680
     gtccagcttt tctagaagca attgctcgtc gcaaatctgg aacaatcaaa aaacaaccan      1740
     caantaaatt tgtncctgcc cctcttcctg cccaaagtgc ttggggccca gctttacctt      1800
     ccccgtctac tggatctagc acttccaagc ccatgcaacg cgttactgag cctcctccgc      1860
     ctagtgctgg ctttgaaata cttatctccc gtattgacca gatgatgtca atgatgntga      1920
     aaatgatgga gcttcttatg aaccagttta ccggcagttc gccttctgat gcgtctaaga      1980
     tcaggagaca tgtctagttt aggcattcgt ttctcatttt ggaacgccaa tggtgtcact      2040
     ggcaaaagtc tcgagttaga gcactatctt accgctaatt caattgacgt gatgctaatt      2100
     aacgaaacgc attttaacag ccgctcacat ttcagaattt ttggatatga tttattgacg      2160
     gctaatcatc cctctgaccg tcttcgagga ggtgctgcta ttttaatccg ctctcacttg      2220
     cagtactccc cttacagtac aaactctact gtaaaatgtc aaactgctgc aattacctta      2280
     agcacggact tgggagacat cgtgattgct tctatttact gccccccctc ctttttatgg      2340
     actgctcaag attttggaca actttttagc gaattttcaa accgttttat catagctggc      2400
     gactggaacg ctcacaatca attttggggt tgtatccgct cttcaccaag aggtgttcag      2460
     cttttagatc atattacgtc ttcaagtctg caagtcttag ctacaggagg accaactcac      2520
     tttccttctg atgcnaggcg aaatccaacg gcaatcgatt ttgctattta taagggtatc      2580
     tcgtccaact ttctgactgt acatgaatct catgaactta gttctgatca cattccgctt      2640
     gaaatacttt tatgcgcttc tacttcaccc cgacttacaa caccaaggct gctgtctcgt      2700
     cgggctaaca ttggacgttt taaggattac cttacaatcc ttattgagaa tgatgaatct      2760
     gctgatctga actgtcctct ggatattgat acagctgtta gtgacctgac tctaaagatt      2820
     caatctgccg ctgccgcatc cactgctatc ggtaatcgcc ctgctgttcc acagccaaat      2880
     aatgcccttt caaacaccag agtaacggcg ctggttaggc agaagagatc actccggcga      2940
     cgctggatgc aaacgcgtca tccgcaagac ttagcaatat ttaaaagagc tgatactcta      3000
     ttaagaaaag cactttatga tgctaagtcc gaatttttcg tccggaaact tagtgctatc      3060
     gatccggatg ctgatcgagg cttcgaactg tggaaatgca ctcgcgggct taaacggcag      3120
     cctctccaga agtttccctt gcttcgatcg gacggtacct gggcaaataa agatgatgaa      3180
     atagctaagg aattcgctga ttctttggaa gaaagattta agccttttga tttggtcaca      3240
     gatgaagaga ctgctgttac agaagctttt gatgatgttc cctctggtcc agcttctcaa      3300
     atttcaccta ttgatgcaga agaagttaaa gaccaaataa agcgactgaa gacgaacaaa      3360
     gcccctggcc atgacagcat tgacggaaaa gtagctaaag ctttgccagt agcagctatt      3420
     tcgttcctta cgcgtatctt taatgctatg attgttcttt catattatcc ggagcagtgg      3480
     aagcatgcga atgttgttat gatccccaag aaaggcgtcn ctccccgctg tgcagattct      3540
     tttcggccta taagcctatt gccaaccttc tctaagattt ttgagcgaat cttactaaaa      3600
     aggcttttta gtgttcatat gttccaggat gcaattccaa atcatcagtt tggtttcagg      3660
     agtctgcata acgctgctga gcaaatgcat cgggtggtca accatatcct taaagcattc      3720
     gaggcgaaaa agtattgttg cgcagtattc ctagatgtca agcaagcctt cgatcgagtc      3780
     tggcactgtg gcttgctcta taagctgaaa cccattcttc ccccgacata ctttgatctc      3840
     cttcgctcat ttctaattgg tagaaccttc caggtggatg ttcgaggatc caagtctgcc      3900
     tcaaggccta ttcttgctgg agtccctcaa ggaagtgtgc tgggtcctgt cttgtataca      3960
     atattcacct cggaccttcc gtcgcccaga ggcaggaatg ttttaacagc tacctatgca      4020
     gatgacacag catttctggc gacaagtgct ctgcgaagag aggcgacaga tatggtgcag      4080
     gacatgctaa atgagtttga ggcctgggcg tcgaggtgga acatcgcagt taatcctgcc      4140
     aagtctcagc atgccacctt ttcattgaac aggctgaaca cttatcgcct aaccttagac      4200
     gggactccaa taaagcactc ggacacggtt aagtaccttg ggcttactct ggacaggcgg      4260
     cttacctgga agcagcacat tgtggcaacc tgcgcttcag taaggcaaaa agcggggaaa      4320
     atgagatggc ttcttcgncc gggcagtgga ctgtcgatca cggcgaaaac ccggctcttc      4380
     aaagcaacct tgatgcctag tctacattgg ggtatacact tctggggcac tgcctgtaac      4440
     acttctataa aaagaattga atcctgccaa tccaaaattt taagacatat gataaacgcc      4500
     ccatactata caagaaacac tactattttt cgagatctca aaattaatcc tgtttgtaaa      4560
     tctatcacca atactgccat tcgctacaga tcaagactcg tctcccacac aaacagactt      4620
     gctttcacac tttccagacc tatgaacaga agaagactaa agagattgca cccatcagac      4680
     aattggatac ttggacggca cgcttgtggg aaactcattc cagacttaga cgcatagact      4740
     gcaacactgc taaacttttg taatnantct ttttattcac tacttttgtt aatttttacc      4800
     atgggtgaaa gtgaattgag ttccacataa caccctccaa taaatatttg ttgagcatat      4860
     cgaaaaaaaa a                                                           4871
//
ID   Jockey-2_DVi repbase;    DNA;    INV; 6642 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6642
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1942-1942 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Tandem array, likely telomeric.
XX
FH   Key           Location/Qualifiers
FT   CDS           351..2264
FT                 /product="Jockey-2_DVi_1p"
FT                 /translation="MAQRQHNNKQITTPIDEEDSDIEIQLIKAGRGPFSAN
FT                 NALKIPAMQIDANQNNNEQLNHAPSTSRAAGLAAANKVAPDAAATTKKSTL
FT                 ADLLTKIASDKKLKGKVSKRHAIPDNSAKRIKMLEADISKAAANDAALSEE
FT                 LENLLGNGQQHELWVTDHPDEDMQIDAVDPVTDAPAPNITNVNVNNNTTVN
FT                 HANSAGVDVRAPVPKVQKIKPAPLFIPFVPEIMPLIEGINDVIGEGTYATK
FT                 PSAGQGLQVLCNDVDSYRKLVQYFQDNSIASHTYQLKHERGFKIIMRHLHR
FT                 STPADWIRTKLSDLGHKARFVSVIKKRFTREPMDMFEIELEPKANNSEILR
FT                 LNMLGGQKVKAELPLRTTDIVQCHRCQQFGHTKNYCRRAFVCVKCSGKHPS
FT                 TECSITANDRPKCANCEGPHAASYKGCQSFKDACKQKESESVVKANVLLAQ
FT                 LGQPTLPVMRSRQRKRSQQRQQQPPKSVQQQDQRQRSKXRQRVHIDQQQQQ
FT                 QQQQTVNFAANSYASALRSGLPDMHSQKQQQQKLKRQTAQQQHRQSRPKQQ
FT                 QLPTRRQMDGQQTLARQQNRSRSCSTRRSATNLNTNCDIGQKLDTLITLMT
FT                 EDRLRANSNVENKLDKLLNLLTNLTSCLMAKEQVTSKQNV"
FT   CDS           2260..6084
FT                 /product="Jockey-2_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFNNHIPSTVRQDSSNRRSNGLKIASWNACGLRNKML
FT                 EMEAFIYQNNIDIMIIVETHLRGTDEIKIDGYYAYQAHHPSNTRRGGAAIL
FT                 VKHSLQHIALPLTSAISMQCAATKITLLNGSAINIAAVYCPPLIELEDELF
FT                 AALRELGNKFIIAGDWNAKSHWWGNARSCRRGGNLLRYVQQNNCEILATGS
FT                 STHFPYNARQSPSAIDFAVYKGLQRELLQISATHDLGSDHLPLLIELLETP
FT                 AFNKSRCYLLPLNASVARFQAWLNQHVLLDTEIHSAADIEDATDILERNIR
FT                 AAAQYATNSHAIQYHQRAQNQCPLSRSLELMIKAKRLLKRHFLVNRHPLAK
FT                 RIHDSLANQVRRTLKEAKERRLNSLLESIDPSDRYNFQKLWRLTNGIKRQP
FT                 APNVPVKKFIQPGSSAEDSNAWCKTTQEKAEAFAQNLEERFKPIITASTAD
FT                 REHISSQLQLPPTHAEMHFRPITDAEVIAEIKALKRKKSPGLDTIDNRTIK
FT                 ALPLVALQYLSLIYNSILRLGYFPSKWKCAVVIMIPKPGKPQEQLNSYRPI
FT                 SLLSGLSKIFEHLLLRRMYESDGFIHAIPKHQFGFRSEHGADQQIGRVTQF
FT                 ILEAYERNQYCAATYMDIQEAFDRVWHDGLRYKLRMILPYATYNVVSHYLA
FT                 ERTFMVECSGGIRSSTKRIAAGVPQGSVLGPVLYTLYTADMPIPGPISPTT
FT                 GYVRHMYRKETLLATYADDTVILTVGRTQTDAVNRMNEYLEVLSAWATKWC
FT                 ITINATKTVHVMHTLRRLQMQTDAQTAHIGGQALLNQTVHTYLGVKLDTQL
FT                 QFNRHISAVINKLRTRFKKMQWLIDSTSKLPLKTKVIIYKQLIAPIWQYTL
FT                 PVWGPLASQTQIDRIQTMQNKILRSIAGAPWYVRNSTISNDLEVASVDDVY
FT                 NEACSKYVQRLLNHSNCLAKDLAINPYVPQRLTRERYSRMLQRHMPHVQRQ
FT                 QEQQLLEAQQRMAEIEAHRPIHGRSVERPLTALQQSILERLSRQRSYQQQR
FT                 AEQREAERAQRRIERQQREEQHRQEMLREHQESIQIYAQIYAQREQALQRL
FT                 EERLQARRLARQAYFAMPPAQQEAVPITSIFIFPANSAAANRSAMGISPTT
FT                 STHTNTTTAQATNTASAISLSVRHTIDGIPDVQNGEGFTDLVIMVTFRCIQ
FT                 RSNQTTRPEQLPRQWRLIERQLQQRLRIRRYAARSYYLMHTTRRQRLARLQ
FT                 QFRLQYPAQWRSIWRRLLLRTLDSNLWYLDQRWSTWRLQLIRLQNIFRWLT
FT                 NRRHGGSSRYLSDR"
XX
SQ   Sequence 6642 BP; 2179 A; 1565 C; 1420 G; 1477 T; 1 other;
     agagcatacg gaaagtcaaa aaaaagtcaa aaaaaaatca aaaattgaaa attactaaag        60
     tggtggcaat gtgtccgcga gagtgcgcgg cgcacgtgaa aaatcaaaaa ttgtgaaacc       120
     acatacattt tgtctgaaaa ctatcaaata gaaaattgca catttttcgg tgcagcaaag       180
     ggcaaagggc actaggccca gccgtatttg tgctagtgct gtaaataaaa acttatcgat       240
     aggacgatat aaaacacatg taataacaga aagaatcgat atcacatgat ctattaaata       300
     atagtgagac cagacttctt actttctcgt atgcctctca aactgtttac atggcacagc       360
     gtcaacataa caataaacaa atcacgacac cgattgatga ggaagactcg gacattgaaa       420
     ttcagctaat caaagctggc cgcggtccat tctcagctaa taatgcgttg aaaatccctg       480
     caatgcaaat tgatgccaat caaaataaca atgagcagct aaatcatgcg cccagcacct       540
     cgcgtgccgc aggcttagct gctgctaata aagttgcccc cgacgcagcc gcaactacta       600
     agaagtcaac tcttgctgac ttgctgacca aaattgctag tgataaaaaa ctcaagggta       660
     aggtttctaa acgccatgca attccagata acagcgccaa gcgaatcaag atgctagaag       720
     ccgatataag caaggctgct gctaatgatg ccgccctgag tgaagaatta gaaaatctcc       780
     ttgggaacgg ccaacagcat gaactctggg ttacagacca tcctgatgaa gacatgcaga       840
     ttgacgctgt tgatccagta accgatgcgc ctgccccaaa cattactaat gtaaatgtaa       900
     acaacaacac tacggtaaat catgcaaatt ctgctggtgt tgacgtaaga gccccagtac       960
     ccaaggtaca aaaaatcaaa ccagcgccac ttttcatacc ttttgttccg gaaataatgc      1020
     cattaattga aggcattaat gatgtcattg gtgagggcac ctatgcaact aagccttctg      1080
     ctggtcaggg cctgcaagtg ctttgcaacg atgtagattc ttaccgaaag ctagtacagt      1140
     acttccaaga taactccatt gcttcacata cataccaact gaagcacgaa cgtggcttca      1200
     aaattatcat gcgccattta catcgctcta ctccggcgga ttggattcgc actaaattgt      1260
     ctgacctggg gcacaaagcc cgattcgtta gtgttattaa aaaacgattc actagggagc      1320
     caatggacat gtttgagata gaattggagc ccaaggcaaa taacagcgaa attttaaggc      1380
     tcaacatgct cggcggccaa aaggtcaaag ctgagctacc actacgaact accgatatag      1440
     tgcaatgtca tcgctgccaa caatttgggc atacgaagaa ttattgcagg cgtgcattcg      1500
     tatgcgtcaa atgtagcggg aaacatcctt ctactgagtg cagcataacg gctaacgatc      1560
     ggccaaaatg cgctaattgt gaaggcccac atgcggctag ctacaaaggg tgtcagtcct      1620
     tcaaggatgc ctgcaagcaa aaagagtctg agagcgtggt caaagccaat gtcctacttg      1680
     ctcagctagg acagccaaca ttgccagtta tgcgtagtcg ccaaagaaaa cggtcacaac      1740
     agcgacagca gcagccgccg aaatcggtac agcagcaaga tcaacgtcaa cgctcaaagw      1800
     cgcgccaacg ggtacatatt gatcagcagc aacaacaaca acaacaacaa actgtgaact      1860
     ttgctgcaaa ttcttatgcg tcggccttgc gttctggctt gccggatatg cattcgcaaa      1920
     agcagcaaca acagaagcta aagcggcaga cagcccaaca gcagcatcgc caatcacgcc      1980
     ctaagcaaca acaactcccg actcgcaggc aaatggatgg tcaacaaacg ctggcacgcc      2040
     agcaaaatag aagccgcagc tgcagtacgc gacggagcgc tactaactta aacacaaact      2100
     gcgacattgg tcaaaaactg gacactctta tcactttaat gactgaagat cgtttgagag      2160
     ccaactccaa cgttgaaaac aagctagata aacttctgaa cttacttacc aacttgacat      2220
     cttgcctaat ggcaaaggag caagttacta gcaaacaaaa tgtttaacaa ccatatacct      2280
     agcacagtcc gtcaagatag cagtaatcgc agatcaaacg ggctcaaaat cgcctcatgg      2340
     aatgcatgtg ggttgcgaaa caaaatgtta gaaatggagg cattcatcta tcagaacaat      2400
     attgacatca tgatcatagt tgaaactcac ctgcgcggca cagacgaaat caagatcgac      2460
     ggctactatg catatcaagc acatcaccca tctaatacgc gacgaggagg cgcagctata      2520
     ctggtcaagc acagtctaca gcatatcgct cttcctctca ctagcgctat atcaatgcag      2580
     tgcgcggcaa caaaaatcac tctgcttaat gggtctgcta ttaacatcgc agcagtatat      2640
     tgcccgcccc tgattgaact cgaagatgag ctgtttgctg ctcttcgtga gctcggcaac      2700
     aagttcatca ttgcaggaga ttggaatgcg aaaagtcatt ggtggggcaa tgctagatcc      2760
     tgcagacgag gtggtaatct tctcagatat gtacagcaaa ataattgtga gattcttgca      2820
     actgggtcct caacacactt cccgtacaat gctagacaat cgccgtcagc aatagacttt      2880
     gctgtctata agggactgca gagagaactc ctacagataa gcgctacaca cgaccttggc      2940
     tctgatcatc tccctctatt aatcgaactt cttgaaaccc cggcatttaa caagtcaagg      3000
     tgctatctac taccacttaa cgcgagtgtt gctcgctttc aagcctggct aaaccagcat      3060
     gtactgctgg atacagaaat ccactcagct gcagatattg aggatgccac agatattctt      3120
     gagcgtaata ttcgagcagc agcacaatat gcaacaaact ctcacgcaat tcaataccac      3180
     caacgagcgc aaaaccagtg cccactcagc aggtctctgg aattaatgat caaggccaaa      3240
     agactgctca aacgtcattt tcttgtgaac cgacacccat tagccaaaag aattcatgac      3300
     agtctcgcaa accaggtcag aagaacttta aaagaagcca aggagagacg tctgaatagc      3360
     ttgcttgaat ctatagatcc tagtgaccgc tacaactttc aaaagctgtg gcgactaaca      3420
     aacggcatta aacggcagcc tgcgccaaat gtgccagtta aaaagttcat tcaacctggc      3480
     agcagcgcag aagacagcaa cgcgtggtgt aaaactacgc aagaaaaagc ggaagcgttt      3540
     gctcaaaatt tagaagagag attcaagcct attattactg cctcaacagc tgacagagag      3600
     cacatctcga gtcaactaca gctacctcca acgcacgcag agatgcattt tcggccaata      3660
     acagatgctg aggtaatagc agaaatcaag gcgcttaaac gtaaaaagtc tcctgggctt      3720
     gatacaattg acaaccggac tataaaggcc ttgccgttag ttgctctcca gtaccttagc      3780
     ctcatttata atagcatact gcgcttgggc tactttccta gcaaatggaa gtgtgctgtg      3840
     gtcattatga ttcctaagcc tggcaagccg caagagcaac taaattcata cagaccaata      3900
     agtctgctat caggtctttc aaaaatattc gagcacttgc tgcttagacg aatgtacgaa      3960
     tcagatggtt ttatacatgc tattccaaag catcaatttg gctttcgcag cgaacacgga      4020
     gcagaccagc agattggccg agtcacgcaa tttatactcg aagcatatga aaggaaccag      4080
     tactgtgctg ctacatatat ggatatccaa gaggcctttg atcgagtatg gcatgatggg      4140
     ctacgatata agctacggat gattctgccg tatgctacat acaatgtagt tagccactac      4200
     ctcgccgaga gaacattcat ggtagaatgc agcgggggaa tccgatctag cactaagcga      4260
     attgcggctg gagtgccgca aggaagtgta cttggtcctg tgctttatac gctatataca      4320
     gctgacatgc ccatcccggg accaataagt ccaacaactg gatatgtgag gcatatgtac      4380
     cgcaaagaaa cattgcttgc aacatatgca gacgataccg tcatactaac tgtaggcaga      4440
     acgcagacag atgcagttaa tcgaatgaac gagtatctcg aagtcttgtc tgcttgggcc      4500
     actaaatggt gtataacaat aaacgcaacc aagacggtgc acgtcatgca cactttgcgc      4560
     aggcttcaaa tgcagacaga tgcccaaact gcacacatag gcgggcaagc gctactcaac      4620
     caaacggtgc acacttacct cggtgtaaaa ttggatacac agctgcaatt taatagacac      4680
     atatctgctg taattaacaa attgagaacg aggtttaaaa aaatgcaatg gctgattgat      4740
     agcacaagca aactacccct caaaacaaaa gttataattt ataaacaact catcgcgcca      4800
     atttggcaat atacattgcc cgtctgggga ccgcttgcaa gtcaaacaca aatcgatcgc      4860
     atacagacta tgcaaaataa aattctcaga tcgatcgcag gtgcaccatg gtacgtgcgc      4920
     aatagcacca taagcaatga tctggaagtt gcaagtgtag atgacgtcta caatgaggca      4980
     tgtagcaaat atgtgcagcg ccttttgaat cacagcaact gcctggctaa agacctagca      5040
     atcaacccat atgtaccgca gcggctaact agggagaggt acagccgaat gctacaaaga      5100
     catatgcccc atgtgcagcg acagcaagag cagcagctgc tagaagctca acaacgaatg      5160
     gcagaaattg aggcacaccg acctatacat ggaagatctg ttgaacggcc actaactgct      5220
     ctgcagcaaa gcattttgga gcgccttagt aggcaaagaa gctatcaaca acagcgcgcc      5280
     gaacaacgag aagcagaacg cgcacagcgg agaatagaga ggcaacaaag agaagagcaa      5340
     catagacagg aaatgcttcg agaacatcaa gagtcgatac aaatatatgc tcaaatatat      5400
     gcgcaaagag agcaggcact acagcggcta gaagagcgac tacaagcaag acgtctggca      5460
     aggcaagcgt acttcgctat gccaccggcc caacaagaag ccgtgccgat aacgagtatt      5520
     tttatatttc cagcgaactc tgcagcagcc aaccgcagcg caatgggcat ttctccaacg      5580
     acgagcaccc acacaaacac aacaacagca caggcaacca atacggcgtc ggctatcagc      5640
     ttgtctgtga ggcacacaat tgacggcata ccagatgtgc aaaatggcga aggatttact      5700
     gatctcgtta tcatggttac gtttaggtgc attcagcgct caaatcagac aactcgacca      5760
     gagcagcttc cacgtcaatg gcgtctgatc gaacggcaac tgcaacaaag attgagaatc      5820
     agaagatatg ctgcaagaag ctattatctg atgcatacta ccagacgaca gcggctagca      5880
     cgtttgcagc aattcagact ccaatatcca gcacagtggc gatcaatctg gcgacggctg      5940
     ctcctgcgaa ctttggactc gaatttgtgg tacctagatc agcgctggtc aacatggcga      6000
     ctccagttaa tcaggctgca aaatatattc cgctggttga ccaacagacg acatggtggt      6060
     agcagccgct acttatctga ccggtaacaa cggctgagat gcaaggattg catgtttata      6120
     atccactaat tcaaacaaag atcaactact cacacttcga agcagtcgtt atgatcaaat      6180
     tggctatatc gtttagcgcc ttctgaagag tgcaaatatg cacatcgtcc accttctcca      6240
     acaaatgcag cacgaaggaa acctgaaaag aagaccatgc agcataaata taagattatt      6300
     aaaattaaat tcaaatttaa cttacctttg aaagacacaa tagctaaaag ctgtgcctgt      6360
     taacagcgga aaacttgttt acctttttaa tgttaaattg tcctagtgat gggacttgct      6420
     aatatgtgcc tgtaaataac ataatgttaa attgtaagtt aacagaaatg ttaaaatgta      6480
     ggcgctaaaa aattcaatta aaatatgtca aatattaatg ttgaataaag aataccaaca      6540
     ctagctgcac cccccctcct gctatgcagg tgcggattgg tgcaatttga atgttggtct      6600
     agtgcgtgtg tcaacgagca tacggaaagt caaaatcaaa aa                         6642
//
ID   Jockey-2_DYa repbase;    DNA;    INV; 3616 BP.
XX
AC   .
XX
DT   16-MAY-2009 (Rel. 14.05, Created)
DT   16-MAY-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3616
RA   Jurka J.;
RT   "LINE-type retrotransposon families from fruit fly.";
RL   Repbase Reports 9(5), 967-967 (2009).
XX
DR   [1] (Consensus)
XX
CC   Probably 5'-incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..1264
FT                 /product="Jockey-2_DYa_1p"
FT                 /translation="MTQTNNRETFKIVFWNACGANNKVDELSLLIQREKAH
FT                 IVIVTETRLDRKSTKLDFPGYVTYLAQNPVSSKRGGVATIVSTRVRHSALE
FT                 AIEKECIQSAPIVLLPENNRRNEMMVIASVYCPPQPKWSSSHFSDILNYAE
FT                 KILGGRTKFVLCGDWNAKHRQWGCSRGCQRGAALYDAVKADTMTEIIATGC
FT                 ATHFPFDSRKNPSAIDFSISKGLGMYEKKISSSSDLSSDHLPILLEINLDR
FT                 NTFFLHKQNNSILKKNTNIVLFKNALDRKVLLNTEIRVAQDINDAINIFIK
FT                 NIMEQLPPQTTRQPQKQARAN*"
FT   CDS           1479..3548
FT                 /product="Jockey-2_DYa_2p"
FT                 /translation="MRQLWRLLDEGKKKIQPNFPLKLETKEGYKWTKTTQE
FT                 TTEAFVSHLEGRFKPNMIIPDCHISKINTGLKTIKESNTAERENTNKNPHN
FT                 QPVTLKELREELKNLNNNKAPGKDLITNKLIKNLPTKATLYLILIYNSILR
FT                 IGHYPDNWKHATVKMILKPGKSANDPKSYRPISLLSGFSKIFERLLLKRLV
FT                 RIDSFKKAIPLHQFGFRKDHGAEQQIARVTQFILEAYERKEYCSAVFLDIT
FT                 EAFDRVWHEGLLLKLAKILPFNLYTILESYLTNRTFEVKDPTGEPSRTGQI
FT                 GAGVPQGSNLGPILYSIFSSDMPIPRTHSVSPTGEMLLSTYADDTVVLSTD
FT                 QLPTAAIRNNQNYLETFSDWADKWGIKVNAAKTGHVIYTLKNDLPTNLKTI
FT                 KIRGNKIKNQNKQSYLGVILDNKLTLSSHVTKLVGKFTAAHKKLTWILSER
FT                 SKLPDNTKMLIFKTILSPIWQYAIPAWGPLVTDAQIKRIQVEENLKMRKVC
FT                 RAGRFTRNQFIRDKYGVKTVEDYYKQATHRFYETIKTHPNKAVRRIVTRHY
FT                 IPKRLERSRQRLLKLTKEHIPQGPTGLTSPKLPKIPELYECKTLKTRKERD
FT                 SIRTRHLEDLPTLLRLEEMEDIRIRNQEEMEKRERENEKWPPDRWCELEIN
FT                 MYNKRYRNGDLTRQEIIKKFRGQPIGIQRIILPDYEGDTT*"
XX
SQ   Sequence 3616 BP; 1381 A; 836 C; 703 G; 696 T; 0 other;
     tagtattgct acgttagaga aagagcgaaa aaacccgaaa agcgtcctaa acccggcaaa        60
     cacccatctg tatcacttcc gtccaccccc aatggcacaa aatctacccg aagagataca       120
     gaaaaacgcg atcctcgagc caaatcttct aaaacgcata gaaagcatgg aagagaagat       180
     aaacaacctt cttgagatag tcactcgcct cgttcaaaaa gatgtaactg gccgaatttt       240
     cccgaaaaat ccctctgagg caaaaggaca aatctttgtc taaaattttc cctccacaca       300
     tatcggaata gtgacatcta ggatgacaca gacgaacaat agggaaacct tcaaaatcgt       360
     gttctggaac gcttgtgggg cgaacaacaa agtggacgag ctcagcttgc tgatacaaag       420
     ggaaaaggct cacatcgtca tagtcacgga aacaaggcta gacaggaaat ccaccaagct       480
     ggattttcct ggatatgtga cctatctagc gcaaaacccc gtatccagca aaagaggagg       540
     agtcgccact attgtaagca ccagggtccg tcattcggcc ttagaagcga ttgagaagga       600
     atgcatccag agtgccccaa tcgtattgct accggagaat aacagacgca atgaaatgat       660
     ggtaatagcg tcagtatact gccctcccca acctaagtgg tcgtctagcc acttcagtga       720
     catactcaac tatgctgaga aaatcctagg aggtcgaact aaatttgtcc tatgtggcga       780
     ttggaatgct aaacatagac agtggggctg ctctcgcggc tgccagcgtg gcgctgcact       840
     atacgatgct gttaaagctg ataccatgac cgagatcatc gctactggct gtgcgactca       900
     tttccctttc gactctagga aaaacccatc agcaatagat ttttccataa gtaaaggtct       960
     tggaatgtac gaaaagaaaa tctcatcgag ctcggatctc tcctcagacc accttcctat      1020
     cctgctggaa atcaacctcg acagaaacac cttcttcttg cacaagcaaa acaacagtat      1080
     ccttaagaaa aatacaaaca tcgtactctt taaaaacgct cttgacagaa aggtccttct      1140
     aaatactgag ataagagtag ctcaagatat aaacgacgcc ataaacatct ttataaaaaa      1200
     catcatggag caactccccc cccagactac cagacaaccc cagaagcagg cacgggcgaa      1260
     ctaacagaca tagtaatact ctcacactag acgaaaacac cagtagatta ttggaagaaa      1320
     aaaggacact aaagaggatt tttaaagcca ccaggacaaa tgaggacaaa gcgaaactga      1380
     aagcagctga aaacagacta aaaaaagcta taaaaacctt aagagagaag actataaaca      1440
     aacaagtcga aggaatcgat acaaaaaacc cagacaggat gagacaactg tggagattgc      1500
     tggacgaagg aaaaaagaaa atacaaccaa attttccact taaactagag accaaagaag      1560
     gatacaaatg gactaaaaca acccaagaga caacagaagc ttttgtttct cacttggagg      1620
     gaagattcaa gcctaatatg atcatacccg actgccacat tagcaaaata aatactggac      1680
     ttaaaacaat aaaagaatct aatacagctg aacgagaaaa tacaaacaaa aacccccaca      1740
     accaaccagt cacgctaaaa gaactaagag aagaattaaa aaacctaaac aataacaaag      1800
     ccccgggaaa agacctaatt acaaacaaac ttattaaaaa cctacctacg aaagcgacac      1860
     tttacctaat attgatctac aattccatac taagaatagg acactacccg gacaattgga      1920
     aacatgctac agtcaaaatg attctaaaac cgggaaaaag cgcaaatgac ccgaagtcat      1980
     ataggccgat cagcctttta tcgggttttt caaaaatatt tgaaaggctt cttctcaaga      2040
     gactggtcag gatcgactct ttcaaaaaag ctatcccact acaccaattt ggattcagaa      2100
     aagaccatgg tgccgaacaa cagatagcaa gggtcacgca attcatcctt gaggcatacg      2160
     aaaggaaaga atactgctct gcggttttcc tggacatcac agaggcgttt gacagggtgt      2220
     ggcacgaggg gctactacta aaactagcta agatcctgcc tttcaatctc tacaccattc      2280
     tggagagcta tctgacaaac agaacatttg aagtcaagga cccaacagga gagccatcta      2340
     gaacaggaca aataggtgct ggtgtgcctc agggaagcaa cctgggcccc atactgtact      2400
     caatcttctc ttcagacatg cctatcccta gaacacacag cgtctcacca acaggagaaa      2460
     tgctgctgtc aacgtatgca gatgacacag tagtcctcag cacggaccaa ctgccaaccg      2520
     cagccatacg taataaccaa aattacctag aaaccttttc tgactgggca gacaagtggg      2580
     gcattaaggt taatgctgcc aaaacaggac acgttatata cactttaaaa aatgacctgc      2640
     cgacaaacct aaaaacgatt aaaattaggg gcaacaaaat aaaaaaccaa aacaaacagt      2700
     cctaccttgg agtaattctt gacaataagc ttacccttag ctcccacgtc accaagctag      2760
     tgggaaaatt cactgcagcc cacaaaaaac tgacttggat attgagcgaa agaagtaaac      2820
     tcccggacaa cactaagatg ctaatcttta agacaatcct atcgccaata tggcagtatg      2880
     ccatcccagc ctggggtccc cttgtcacgg atgcccaaat aaaaaggatt caagtcgagg      2940
     aaaaccttaa aatgagaaaa gtttgcaggg cagggagatt tacaaggaac cagtttataa      3000
     gggacaaata cggagtcaaa acggtagaag attactacaa gcaggccacc cacaggttct      3060
     acgaaaccat aaaaacacac cccaacaaag cagtccgaag aatcgttacc agacactata      3120
     tccctaaaag actggagaga agcagacagc ggctactaaa attgacaaag gaacacatcc      3180
     cccaaggacc gactggacta acttcaccca aactccctaa aatccccgaa ctctacgaat      3240
     gtaaaaccct aaaaacacgc aaagaaagag acagcataag aacaaggcac ctagaggatc      3300
     tccccacact tctaagactg gaagagatgg aggacataag aattaggaat caggaagaga      3360
     tggaaaaaag agagagagag aacgaaaaat ggcctcctga cagatggtgc gagttggaga      3420
     taaatatgta caataaaaga tatagaaatg gggacctaac taggcaggaa ataataaaaa      3480
     aattcagagg gcaacccata ggcatccaac gaataatcct acccgattac gaaggggaca      3540
     caacataata actaaaacaa tttaaaaaca agaaggctaa gcaaaaacaa acaaaagaaa      3600
     aaaggggaaa aaaaaa                                                      3616
//
ID   Jockey-2_Hmel repbase;    DNA;    INV; 5084 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   26-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_Hmel.
XX
NM   Jockey-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-5084
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           258..2123
FT                 /product="Jockey-2_Hmel_1p"
FT                 /translation="MSXHQPPRAGTQASPXAAADTAATSGTRPPRSTALYG
FT                 VPVQAMDHGTTSREPSLSTAQPGAPCLAGSTPAPAASPSPGQASRAARSAH
FT                 RHQEQKKRSPSAPPRVLDDTMSPQSSLNRDMVALAELKRNGALSRELMEHM
FT                 AMFLNDRARALDQTQPQPMYLTPVRRQRTAEYETPGTGKRHCPVTIQASRP
FT                 ESRKRPEGGRVGKDMPLLVPPTTVASTSDQASGTVSTATTTSSSTFADALR
FT                 APGPSRVTQDAPTTATSVTPKPRYPPLIVENMPNWATHFRSLHNKLGQAPN
FT                 ARPFGRGVRFTPSSENEXRVIQRYLSELEKSEAISWFSYALPAEXSKKVAI
FT                 RGLPVTTTPEEITDALADLGFTAEYVRPIKARKGRPGCIFLAILKNTPDLI
FT                 PGIYSVTELLFMPGIKIEAWRSKRGPAQCHRCQAFRHSSHGCHRRLACVRC
FT                 GEEHLARDCPRALDVPATCANCGGAHPANYSACPQYKRELQNKRAGTVALT
FT                 KEDSTRKPRTSAPLVSSNTVGAENAAATLMAPANPATEKGGRRLKKRGGKR
FT                 TKRQKASEPLAAPLKTAAAAPDAAPRTTSATTRQPTHAIIVRAIDTLKEVL
FT                 IALQEGRDPVQCVLSGMSNLLLHA"
FT   CDS           2104..4809
FT                 /product="Jockey-2_Hmel_2p"
FT                 /translation="ATFSFTPEAPRVLYWNAAGLRRRLPFLRHLLRDNSVD
FT                 VALINETHLHPALPSNLPGYHVLRLDAPAENPWRGLLVAVRRNLVFHQLPN
FT                 LDAQSFQSLGVEVHIGSKAIRMYAIYRPGGNNRLRVSEVHQLLGSSIPTLA
FT                 AGDWNAKHPAWRCWTTCTAGRRLHQDSIRHRYEVXGPDEPTHYSHASTHQP
FT                 TTIDLVVHRGLDAMDIETLPDAFGSDHQPVLVTLRGRLTLASGPPPGRRIS
FT                 WVRFEANMEEQLQHLTPPISEPIVDSADIDRLEARLTGTIQQAMEEASTPA
FT                 TPRTLPPIPARIRALIXRKRRVHSEWQQTRDPAVKTRLNRLVERVRKALVD
FT                 VGADAWERRIEEADEDQPSLNRLCRQLTKKKPATHPLVHPDGSLRYSAEER
FT                 AEILVEHLAATFQPNASKRPAHHARMEADVARTLANPERPLPAPPFFTPEL
FT                 VXKTVKKLKLKKAPGLDGVTNSALRHLPRKFIAALTRLFNAILRLGYFPRA
FT                 WKEGLVIMLPKARKNPRXPDSYRPITLLXAVAKLFEKLLLPLLQAHFHPRN
FT                 EQFGFRSGHSTTLQVARVVHYATTTFNRKESATAAFLDVSRAFDRVWHPGL
FT                 LYKVLNAGIPHYVAQILADYLHGRTFRVRVESVRSSSHPIAAGVPQGSILS
FT                 PALYALYTDDIPIQQDTTLALYADDIALFTKSLNPKHAAVKLQRALDLLPK
FT                 WLAKWRLELNIAKTQAISFGTRRQPPPLILQGQQVPWSSRATYLGVVIDRR
FT                 LNMTGQVKKAATAARTALILLRPLFQSRLPLRTKLSLYKAYVRPHLTYASP
FT                 AWYALVSENQRRILQVVQNVALRRVTQAPYFVRNATLQRDLRIEXLEDHIG
FT                 RLASNAYRRADASDHLHLRSIAPLHTRPPDATKRLPRDIIPPSPSXXDS"
XX
SQ   Sequence 5084 BP; 1102 A; 1771 C; 1370 G; 788 T; 53 other;
     tggatcagcc tgactgttac ctgcttagga tcaagtactc atcactacca gaagaagacc        60
     ggaccgaagc aagctcaccc gaacccgagg accacaccaa gaagctctca ccttatttgt       120
     gaccaaataa ggaggaactt cgcccgcact ggcctgtgcg gaggggaacc ccttcccctt       180
     ggactccctg cccggaccga gatgggcaga agggttgtga ggacagtcaa ctgctgccgc       240
     ctcccgtgct cataggaatg agcasccacc agccgccgcg tgcggggaca caagcgtccc       300
     ctrctgcggc cgcagacacc gccgcaacca gcggcacccg gcccccgcgc tccactgcgc       360
     tgtacggcgt acccgtgcag gcaatggacc atgggaccac gtcgagggag ccctctctct       420
     ccacggcgca acctggcgcg ccgtgcctcg cgggatcgac gcccgcacca gccgcctcgc       480
     cttccccagg ccaggcatcc agggccgcac gcagcgccca ccgacaccag gagcagaaga       540
     agcgctcccc ctccgcgccc cccagggtgc tggacgacac catgtccccg cagtcatcac       600
     tgaataggga catggtagct ttggcagaac tcaagcgcaa tggtgcgctg agtcgggagc       660
     tgatggagca catggccatg ttcctaaacg accgtgctcg agcgttggac cagacgcagc       720
     cgcagcccat gtacctgaca ccggtgcgcc gtcagcgcac tgcagagtac gaaaccccag       780
     gcactggaaa gcgccactgc ccggtgacca tccaggccag ccggcctgaa tcaagaaaac       840
     gcccagaggg aggcagggtc ggcaaggaca tgccactcct cgttcctcca actacagttg       900
     cttccacgtc ggaccaggca tcgggtaccg tatccacagc gaccaccact tcgagctcaa       960
     cgttcgctga cgcgctccgg gcaccdggcc caagccgggt gacacaggat gcgccaacca      1020
     ctgcgacctc tgtaacaccc aagccgcgct atcccccgct gatagtggag aatatgccaa      1080
     attgggcgac tcatttccgg tcgctccaca acaaattggg acaagcacct aacgcgcgcc      1140
     ccttyggtag aggggtgcgt tttacaccca gytcggagaa tgagyaccgc gtaatacagc      1200
     ggtacctctc cgagctcgag aagagygagg ccatatcctg gttctcctat gccctcccgg      1260
     cggarraaag caagaaggta gccatcaggg ggctacccgt cactactacc ccggaagaaa      1320
     taaccgatgc cctggcggat ctcggcttca ctgccgaata cgtgcgtcca attaaagcga      1380
     ggaaggggag gcccgggtgc atcttcctcg ccatcctgaa gaacaccccg gacctgatac      1440
     ctggcatcta cagcgtgacg gagttgttat tcatgccagg tatcaaaata gaagcctgga      1500
     ggagcaagag gggcccggcg cagtgtcacc gctgccaggc attccggcac tccagccacg      1560
     ggtgccaccg gcggctggct tgcgtgaggt gcggcgaaga gcacctcgcg cgcgattgcc      1620
     cgagggccct cgatgttccc gccacgtgcg ccaactgtgg cggcgcccat cccgccaact      1680
     actcagcctg cccccaatac aagagggagc tccagaacaa gagggcgggc acagtcgccc      1740
     tcacraaaga agattccacc cgcaaaccca ggacctcagc tcccttagtc tcctccaaca      1800
     cggtcggagc ggagaacgca gccgccactc tcatggcccc cgccaatccc gctacggaga      1860
     agggtggcag aagactcaag aaaaggggag ggaagaggac aaagagacaa aaggccagcg      1920
     aacccctcgc tgcccccttg aagactgcag ccgcggcccc tgatgccgcg cctagaacca      1980
     catcggccac aacccgccag ccgacgcacg ctatcatcgt cagggccatc gacaccctca      2040
     aggaagttct cattgccttg caggagggtc gtgaccctgt ccaatgcgtg ctaagcggga      2100
     tgagcaacct tctccttcac gcctgaggcc ccccgcgtac tctattggaa cgccgcagga      2160
     ctccgccgtc gcctgccctt tctccgacac cttctacgcg acaacagcgt tgacgtcgcg      2220
     ttgatcaacg agacgcacct ccacccagcg ctcccctcca acttgccggg gtatcacgtc      2280
     ctgcggttgg atgcgccggc agaaaatcca tggcgcgggc tgctggtagc cgtccgccgc      2340
     aacctcgtgt tccaccagct gcccaacctc gacgcccagt cgttccagtc tctgggcgtc      2400
     gaggtgcaca tcggctccaa agccatacgg atgtacgcca tttaccgccc cggcggaaac      2460
     aaccgcctac gagtcagcga ggtgcaccag ttgctcggta gttccatccc cacactcgcg      2520
     gccggggatt ggaacgccaa gcaccccgca tggaggtgct ggacgacctg caccgchgga      2580
     cgccgcctgc accaagactc catccgccat cghtacgaag trrtgggtcc cgacgaaccg      2640
     acacactact cccacgccag cachcaccag cccaccacca ttgacctggt agtgcacaga      2700
     gggctcgacg cgatggacat tgagaccctc ccagatgcct tcgggtccga ccaccagcct      2760
     gtcctagtta cacttagggg caggctgaca ttggccagcg gcccaccacc cggacggcgg      2820
     atctcctggg tgcggttcga agccaacatg gaagagcagc ttcagcacct aacgcctccc      2880
     atctctgagc caatcgttga ctctgcggac atcgaccggc tcgaggccag gctcaccggg      2940
     accatacagc aagcgatgga ggaagcctca acgcccgcca caccccgcac tctgcctccc      3000
     atccctgcac gcatccgcgc cctcatcghg cggaagagga gggtacactc tgagtggcaa      3060
     caaaccaggg acccagcagt gaaaacccgg ctcaaccgcc tcgtagagcg cgtvcgcaag      3120
     gcgctcgtcg acgthggtgc cgacgcgtgg gagcgccgga ttgaggaggc tgacgaggac      3180
     cagccctccc tcaaccgtct gtgtcgccaa ctcaccaaga agaagcchgc tactcatccc      3240
     ttggtgcatc cdgacggctc tctccggtac tccgcggagg agagagcaga gatactggtg      3300
     gaacacttgg cagccacdtt ccaaccaaac gccagcaaac gacccgccca ccatgcgcgg      3360
     atggaggccg acgtcgcccg cactttggcc aacccagagc gaccactccc tgcacctccg      3420
     ttcttcacgc ctgagctcgt cdcgaaaacg gtgaagaagc taaagctgaa gaaggcccca      3480
     ggcttggatg gcgttacaaa tagcgctcta cgccacctac cccgcaagtt catcgccgcc      3540
     ctgaccaggc tctttaacgc cattctdcgc ctgggatact tcccccgggc gtggaaagag      3600
     ggcctggtca ttatgctgcc caaggcaagg aagaaccccc gcadcccaga cagctaccgg      3660
     cccataaccc tcctcaghgc ggtggccaaa ctgttcgaga agctgctact accgcttctc      3720
     caggcgcact tccacccgcg caacgaacag tttggcttcc gtagcgggca ctccaccact      3780
     cttcaggtag ccagagtggt gcattacgcg accacaacgt tcaacaggaa ggagagtgcc      3840
     acagcagcct tcctcgatgt gtcgcgcgcg tttgatcgcg tgtggcatcc ggggctgctg      3900
     tacaaagtgc tgaacgcggg catcccccac tacgtcgcgc agatcctggc cgattatctc      3960
     cacggcagga ccttcagggt aagggtggag agtgtgaggt catccagcca cccaatagcc      4020
     gccggagttc cacagggcag cattctttca ccagccctct acgccttgta caccgacgac      4080
     atccccatcc aacaggacac aacgctggca ctttacgccg acgacatcgc cctgtttacg      4140
     aagtcgctca accccaaaca tgcagccgtg aagctccagc gcgccctcga cctgctgccg      4200
     aagtggctgg cgaagtggag gctcgagctg aacatcgcaa aaacccaagc gatcagcttt      4260
     ggtacccgga gacagcctcc tccgctgatc ctgcagggcc agcaggtccc ctggagcagc      4320
     cgagcaacct acctgggggt tgtgatagac agaagactca acatgacagg gcaagtcaag      4380
     aaagcggcca ccgcagcgag aactgcgctg atcctgttgc gcccgctatt tcaatcaaga      4440
     ttgccactaa gaacaaagtt gtcgttgtac aaggcgtatg ttaggcctca cctgacatac      4500
     gctagcccgg cgtggtacgc cctcgtcagc gagaaccaac gaagaatcct gcaggtggtc      4560
     cagaacgttg ccctccggcg cgttacccag gctccctayt tcgtcaggaa cgctaccctn      4620
     cagcgtgacc tgaggataga gagbctggag gatcacatcg gccggctcgc gagcaacgcg      4680
     tatcgccgyg ccgatgcttc ggaccacctg cacctacgca gcatcgcbcc gctccacact      4740
     cgaccgccgg atgccaccaa acgcctgccg agggatatca tccccccctc yccctcnghh      4800
     nccgactcct gagcagccac ctcggtcgct ggtcgcctag ctgggcctcc cttggggyaa      4860
     ccaagggtct cacccggctg ggctgaccgc ccaggtggca aacgctcanh ccccccctnc      4920
     accccwdcaa gcctccantd cachgtgcct gcctcggcag ncacaacccc accgggccta      4980
     gtgcccacyc caacgacgtg gccatngtaa tggccrccgc hagaaaccac ggtcagaggg      5040
     cwdytgcctg caaccgtttc ccagcgccay ggcgccggag gaaa                       5084
//
ID   Jockey-2_HMM repbase;    DNA;    INV; 4804 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4804
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2798-2798 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. likely 3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           230..2164
FT                 /product="Jockey-2_HMM_1p"
FT                 /translation="MSGRSGAQRDRSRSRPRASATPGRSTPTVXATPPGPA
FT                 PRRPPQAEDSXRTPEARDVTACPPGAPPTSAERMTAPSXTTXXPMTPXPQR
FT                 PSRAASREMPQPQRSPSAPPRVEDELSPXSRLNSDMLVVSELQKRGALSRS
FT                 LMVHIAMYLNDKGKELXRAGAAAAAADPLLGVPPLTPVRRPRPSDDADEEA
FT                 AKRVCAQPRAAPPPNPRDPRLRQRXPRTTPPAASNTTGSQPDASDAGTFAD
FT                 ALRAPGPGPSRTAPAAAXTPAPATXSAAPPPPKPRFPPLVVEKLPDWARHF
FT                 RALRDRLGHAPNARPFGQGVRFSPESEEEYRAIQRYLSDLEKTERISWFSY
FT                 ALPAEKSRKVAIRGLPATTTPXEITDALRELGFQAEYARPIKARMGRPGCI
FT                 FFVIFANTPDLVPGIFQISELLNMPGVKVEAWRSKRGPAQCHRCQAFRHSS
FT                 HGCHRRLACVRCGXEHLARDCPRPRXEPATCINCGGAHPANFTACPQFRKE
FT                 YRNKRAGTVALSQSAPRPTRGAPPASTXMVNXDESAPTLMAPANPPSTRGA
FT                 GRKHKRGGKRTRRQKESQPQPPPAAAATXPVTTAAPDAARRPTATAANAQP
FT                 PAXSHPPAQVAMDRAIDTLKDVLIALREGRDPVQCVLEGMKNLLLNV"
FT   CDS           2160..4802
FT                 /product="Jockey-2_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSXHLRILXWNACGLRRRKRFLRLMLRDQRIDVALIN
FT                 ETHLPSDFSANLPGFHTLRLDSTTDXPXRGLLIAVRRGIVFSPLPDLGTQS
FT                 FQSLGVEIHHASKPLRLFAIYRPSSRPLVVSELRAILDSTTPTLAAGDFNA
FT                 KHPAWRCSFACPDGRRLLRDAQRAGYEVAGPDQPTHYHYADCYAPTTIDLA
FT                 VYRGLETVDLETLPDAFGSDHQPVLATLSGGLTLAKPPPARGRITWERFEA
FT                 SLATKPTHIPPLTDSAAIDNLAADITASVQDAMQAATAPPSSHRLTPIPGH
FT                 VAKLIQQKRKLRTEWQTTRDPAIKTKVNQLIERIRAALDEDASDAWERRIQ
FT                 RASEDQPSLNLLSRQLMKKKPPTGPLLHPDGSLRYSAEERAAILAEHLATT
FT                 FQPNPSERPALHAQMEAEVSSRLAAPELPLPPPPFISPTAVKKAIGRLKPR
FT                 KAPGLDGVTNAALQHLPTKTIAALARLFSAILRLGYFPQAWKEGLVVMLPK
FT                 AGKNTRHADAYRPITLLSSVAKLFEKLLLPLLLPHLQPRQEQFGFRSGHST
FT                 TLQVARVLHFAAAAANRKESAAAAFLDVASAFDRVWHPGLLLKVLRAGTPH
FT                 HLATTVAAYLSGRSFCVRVEHARSCTHQIAAGVPQGSILSPALYSWYTDDL
FT                 PVEEGTMLALYADDVALLTKSLNANHAAVKLQRALNLLPNWLAEWRLSLNV
FT                 AKTQIISLGRHLSLPPPLSLQGQQIHWKPTATYLGVVVDRRLSMMGHVKKA
FT                 ANAAKVALHLLRPLFRSRLPLRLKLALYKTYVRPHLTYAAPAWYALASSRQ
FT                 RNILQVVQNVALRRVTQAPYFVRNATLQRDLRIESLEDHIRRLASNAFRRA
FT                 DVSDHLHLRSIAPWHTRPPDVRRLPRDL"
XX
SQ   Sequence 4804 BP; 861 A; 1831 C; 1336 G; 714 T; 62 other;
     ggatcgccgc ccgccgtcga gtaagcacct ctgcgcactc cagcggcacg agtcctatag        60
     taccgagaaa ctctccacta tttcgtgttg aaatcgccgt cgagtttcgc cagcgccccg       120
     tggcgccgcg wcggacaccg acgccctcgc gtckcatacc gatctcgcga tcgcattacg       180
     cggtcgatga ctgccgcgtg cgggcactga cgacgccagc cagctcacca tgagcggccg       240
     cagcggcgcg cagcgagacc gctctcgctc gcgcccwcgt gcctccgcga ccccaggtcg       300
     gagtacgccg accgtsgawg ccaccccccc cggccctgca ccccgcaggc ccccccaagc       360
     cgaagactca ckgcggacac cggaggcgcg cgatgttacc gcgtgccctc ccggcgctcc       420
     gcccacttcc gccgagagga tgaccgcccc ctcwgmgacg actcwgmcac cgatgacacc       480
     gwtgccgcag cgaccctcca gggccgcctc cagggagatg ccgcaaccgc agcgctcccc       540
     ctccgcgcca ccccgcgtcg aggacgagct ttcgccgckg tcgcgcctca actcggacat       600
     gctcgttgtg tccgagttgc agaagcgcgg wgctctttcc cggtcgctca tggtacatat       660
     tgccatgtac ctgaacgaca agggaaagga gctggawcgc gccggcgcgg ccgctgccgc       720
     cgccgacccg ctgttgggcg ttccmccgct aacgcccgtw mgacgacctc ggccctccga       780
     cgatgccgac gaggaggccg ccaagcgcgt gtgcgcgcaa ccgcgcgccg caccgcctcc       840
     caacccmcgc gacccccgcc tacgccagcg ggakcckcgg accacgccac ccgccgcctc       900
     caacaccacc ggcagccagc cggatgcctc sgacgcaggc acctttgctg acgcgctcag       960
     ggcccccggc ccgggcccga gccgcactgc tccggccgca gcamcgacgc cggcgccggc      1020
     caccgmktcg gccgcgcctc cgccaccgaa gccgcgcttc ccgccwctcg tggtcgagaa      1080
     gctacccgac tgggcgcgcc acttccgcgc gctccgcgac cgccttggcc acgcccccaa      1140
     tgcacgcccc ttcgggcagg gtgtgcgctt ctctcccgag tccgaggagg aataccgcgc      1200
     tatccagcgc tacctctcgg acctcgaaaa gacggagcgc atctcctggt tctcctacgc      1260
     cctgcccgcg gagaaaagca gaaaggtagc catcaggggg ctacctgcaa cgacgacgcc      1320
     cgamgagatw acmgacgcac tacgwgagct cggcttccag gccgagtacg cccgwccaat      1380
     taaggcaagg atgggccggc ctgggtgcat wttctttgtg atcttcgcca acaccccgga      1440
     cctggtaccc ggcatctttc aaatctcaga gcttctsaac atgccgggtg tcaaagtgga      1500
     agcctggagg agcaagcggg gcccggcgca gtgccatcgc tgccaggcst ttcggcactc      1560
     aagccatggg tgccaccgcc gcctggcttg cgtgaggtgc ggggamgagc acctcgcgcg      1620
     cgactgcccg cggcctcgcg amgagcccgc cacctgcatc aactgcgggg gcgcccaccc      1680
     ggcgaacttc accgcgtgcc cgcagttccg caaggagtac aggaacaaga gggccggcac      1740
     cgtggccctc tcccaatcgg cgccccgccc aaccaggggc gccccgccgg cwtccaccam      1800
     tatggtsaac kcggacgaga gtgcgccaac cctgatggcc cckgccaacc ccccktcgac      1860
     taggggcgcc ggcaggaaac acaagagggg ggggaagagg acaaggaggc agaaggagag      1920
     tcaaccccaa cctccccccg cagcagcagc macccwcccc gtcaccaccg cggcccctga      1980
     tgccgcccgg cgaccaacag caaccgcagc gaacgcgcaa ccaccggcca kctcccaccc      2040
     gccggcgcaa gtggccatgg acagagcaat cgacaccctc aaggacgtac tcatcgccct      2100
     gagggaaggt cgggaccctg ttcagtgcgt ccttgagggg atgaagaacc tcctcctcaa      2160
     tgtctgakca cctccgsatw ctctwctgga acgcctgcgg cctgaggagg aggaagaggt      2220
     tcctccggct catgctgcgc gaccaacgaa tcgacgtcgc gctcatcaat gaaacccatc      2280
     tgccatcsga cttctckgcc aacctgcctg ggttccatac tctgcggctg gactccacca      2340
     ckgacamccc ttwccgwggt ctcctcatcg ckgtccgmag agggatcgts ttctckccgc      2400
     tgccmgacct cggcacccag tccttccaat cgctgggtgt cgagatccac cacgcctcsa      2460
     aacccctgag gctcttcgcc atatatcgcc cgagctcccg tccgctggtg gtcagcgagc      2520
     ttcgggcgat ccttgacagc accacaccaa cgctggcagc cggggacttc aacgccaagc      2580
     accccgcctg gcgttgctcc ttcgcctgcc ccgacggacg ccgcctcctg agagatgccc      2640
     agcgcgctgg atacgaggtg gctggacctg accagcccac ccactaccac tacgccgatt      2700
     gctacgcacc caccaccatc gacctggcgg tgtaccgagg cctggagacc gtggacctcg      2760
     agacgctgcc cgacgccttc gggtcggacc atcagcccgt cctggctact ctctccggcg      2820
     ggctgacctt ggccaaacca cctccggccc gaggccggat cacctgggag cgcttcgaag      2880
     cctccctcgc cacgaagccg acgcacatcc ccccgctcac agactccgct gccatcgaca      2940
     acctggccgc cgacatcacc gcgtccgtcc aggacgcgat gcaggcagcg acggcacccc      3000
     caagctcgca ccgcctcacg ccgatccctg ggcacgtcgc caagctcatc cagcaaaaaa      3060
     ggaagcttcg caccgagtgg cagacgacca gggatccggc gatcaaaacg aaggtcaacc      3120
     aactcatcga gcgcattagg gccgcgctcg atgaggacgc ttccgacgcg tgggagcgcc      3180
     gcatccagag ggcaagcgag gaccagccct cgctcaacct gctcagccgc cagttaatga      3240
     aaaagaagcc gcccactggt ccgctcctcc accccgacgg ctccctccgc tactctgcgg      3300
     aggagagagc cgcgatcctg gcggagcacc tggcgacgac gttccagccc aacccaagtg      3360
     agcgtccagc acttcacgcg cagatggaag cggaagtgtc ttcccgtctc gctgctcctg      3420
     aacttcctct gccgccgccg ccgttcatct cgccgactgc cgtcaagaag gcaatcggcc      3480
     ggcttaagcc cagaaaggcg ccgggtttgg acggcgtcac caatgcggcg ctccagcact      3540
     tacctacgaa gaccatcgca gcattggcca ggctcttcag cgccattctg cgcctgggct      3600
     acttccccca ggcgtggaag gagggcctgg tcgttatgct ccccaaggcc ggcaagaata      3660
     cccgccacgc cgacgcctac aggcctatwa ctctactgag ctcmgtcgcc aaactgttcg      3720
     agaagctact ccttccgctt ctcctgccgc acctccagcc gcggcaagaa cagtttggct      3780
     tccgcagtgg ccactccact acgctccagg tggccagggt gctgcacttc gctgcagcag      3840
     cagctaacag gaaggagagt gctgctgcag ccttcctcga cgtggccagc gcgttcgacc      3900
     gcgtctggca cccggggctc ctcctcaagg tgctccgtgc tggcaccccg catcacctcg      3960
     cgaccactgt agccgcctac ctgagcggac gctccttctg cgtgagggta gaacacgccc      4020
     gctcctgcac ccaccagatc gccgccggtg taccccaggg gagtatcctc tcccctgcgc      4080
     tctactcttg gtacaccgac gacctgccag tagaagaagg taccatgctc gccctatacg      4140
     ccgatgacgt ggccctactt acgaagagcc tcaatgccaa tcacgccgcc gtcaagctcc      4200
     agcgagcact caatctgctg ccgaactggc tcgcggagtg gaggctctcg ctcaacgtgg      4260
     ccaagaccca gatcatctct ctggggcgcc acttgagcct gcctcctccg ctgagcctgc      4320
     agggccagca gatccactgg aagcccaccg cgacctacct cggcgtcgtg gttgaccgga      4380
     ggctctcgat gatggggcac gtcaagaagg ccgcgaacgc ggcaaaagtg gcgctgcatt      4440
     tgctgcgccc cctcttcagg tcccgtctcc ccctccgttt gaagctcgca ctgtacaaga      4500
     cgtacgtcag gccgcatctc acctacgccg ccccggcgtg gtacgcccta gcgagttccc      4560
     gccaacgcaa catcctgcag gtggtccaga acgttgccct ccggcgcgtt acccaggctc      4620
     cctacttcgt caggaacgcc actctccagc gtgacctgag aatagagagc ctggaggatc      4680
     acatccgccg gctcgcgtcc aacgcgtttc gccgtgcgga tgtctcggac cacctgcacc      4740
     ttcgcagcat cgcgccgtgg cacacgcggc cccctgacgt gcgtcgcctt ccgagggatc      4800
     tcct                                                                   4804
//
ID   Jockey-2_LMi repbase;    DNA;    INV; 4975 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4975
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3148-3148 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1669..2214,2320..3309,3382..4347,4351..4953)
FT                 /product="Jockey-2_LMi_1p"
FT                 /translation="NLPSTLSFHQHHSLHLHRTDGPPPLARGGVAIGHLHH
FT                 HPVRLQPLLNDPTEHLILSLFLPSLTITLATIYIRSHVLLPYDFLSHVDRN
FT                 FTTYVIAADLNLASHPIGELQRWRQFVASLRGDTVPLPRPTRPESNTPIVL
FT                 ASPNLLGRLQAEALTLLAVTTPLYSLPLTPAADLTVLPILTPSTTPHPSFT
FT                 RQLLTPFMPIFLLKPSSPPPPSTGRPLLRESHHLYRSFLQTHDWDTLQCHR
FT                 RSNDILETSWPRKNAGPGDRHAPILMLHSPSIPPSTGKPSTALTGSRSAPT
FT                 YPLLHNDHPFPDNASKAEHFATHLSDVFSVPDDPRFHFSLFPDVHERTNTS
FT                 SASLALVPDLDHIPPSELNTPITALDIQLTLCTKRHTAPGHDCLTYRHLCA
FT                 CPDSFHTALASLYNVILYTGFFPDLWKTSRIVMFPKPGKPPSDASSYRPIS
FT                 LTSVFSKVLETILSRHIHQHLCQHQLLPLSQCGFQHSFSADDQLLRSPPPF
FT                 CPAKFPLHRHLCLPRHLRPFIASFLSHRPSYVTVNNSNSCLFYPSAGVPPG
FT                 SVLSPLLYLIYSADMPQPQPPVHLFQYADDTAFLALAPSLARSQHLLQSHL
FT                 SQFSTWCNQWLLSVNPTKSQAIIIGRTTRSFRHRDLYLTLHDRPIPQTSTL
FT                 KYLGLTLDRSLSWNPHLQTVRQKALSRLNLLKLLSGRTWGLNPSTILYTYR
FT                 SLMRPVLCSFHPAWISASPTYYKSLQILERHALRLAYRIRLPSPTRILYDL
FT                 IPFPHLLKFLEHLRILYTTRKIESSHPVVSPILLNPGPLPRRYQHIPPSLH
FT                 LHTLHILSQGNFRHLPLPDDALRPDIYPSYQPSLPSPYIMCPPSTPTPLPP
FT                 LPTWISFPSLGVLTFSFPSPPNLPPSRPSAPPFLPLSPCGVSVLYFLTVFL
FT                 TVHQAKVSCQCQVVNVVLRLQQPPHRQNTVLPCFLIVSLLSSPFTVQNLCF
FT                 LATVAVFNTDYVCFKALISLFLIRLFSLLFMLNSHFYLFFIVKINIFISCF
FT                 KLPFTLSNSYVXWAEEQRTRLLPACPTGH"
XX
SQ   Sequence 4975 BP; 944 A; 2013 C; 750 G; 1267 T; 1 other;
     gtcctccagc tgtagatatt gccgggctga ttcggttact tagttggcta cctggtaccg        60
     ttgctccctc ctgttcctgc tgctgcctcg aagtacgctg cgctgtcgcg ccgccctgtc       120
     gccgccgctg tcttcgtcgc gtttttcgct ctcgtctact cgctactctt ggtgtcatcg       180
     catctgtttg tcttcgccat ctgtcgctgt caccgtcctc gagatcgtcg cctgctttgc       240
     attgactttt cgcctcacca tgtctgatat ccctactacc accacctcaa cctctacacc       300
     tccttctcct gcctccacca caataacgtg gtgtgctgcc tccatccccc agtctactat       360
     ccccttatct ccctcctgtc agccaccgca cccaccactt cctctgaccg agtcccaacc       420
     tccgccccct tccactctcc tgccgcactg ctctcacagt cccacctgcc tcctcgagcc       480
     tcgaagcacg tcgccgcagc cggtcccctc cccgccaccc tatccgaccc gtccccaacc       540
     cctacagcac cctctgctcc cgcaaggtca caaccaaaac aaacgctcca cacggatccc       600
     cccctctccc caagaaatgc ctgccaccgc acatcagtca caaccctacc atcgccgaat       660
     aatggacacc accccgcctc ctccccctct cccaaatata cacctatgtc cttctcgccc       720
     tgacccaaaa taccttgaca atcgtacctg tcgattgaag tgaggaaata cttcccacct       780
     gcccctctcc caactaaccc cacgtaagac tccgtcttat aaatccatct ccccacttcc       840
     atactgactc cttcaacgcc tgggtccgga ttgcattgga cccacgccac ctcacccctg       900
     acccttcttc ttcccttcct cgccaacctc aactccccac cgctcaccaa atcgagcccg       960
     gtgatcacgg aggaggaggt gttggcaact cagcgctcac ccagaccttg aaatacgctc      1020
     cgccaagcgt atccaaatgc ttccggccca cctacctgat gcggatcttt aggaatccgc      1080
     atcatccact gaccgtctcc tcacgagggg gcataatata cgatcgccgc tacaagtgga      1140
     tccgtctcgc tccccccccc gtcataccgc tgtggtcgtt gtctagttta caacaccacc      1200
     tcacccaaaa ctgtaaaaac cctcccacct gtcctcactg tgaatcccct cacctcccct      1260
     cccaccgcaa cacctgtggc gaccctgagt tgactgtccc cgtccgcctg ttgaccccta      1320
     tccaccccaa caactccctc tgtccccctc ccactgggag gcgtcatccg attcgtcaca      1380
     agtcctccaa aacattcgcc cattccaacg cccccacacc caacagatcg ccctcgctgc      1440
     ccgctctgtc ttccactgga aaccatcgcc gcttctccgg accactccca tttcaccttc      1500
     tcccgcaagt tacccttgta taaagtacct cctctccgcc ccgcagctcc ccatggcatg      1560
     cccaccccac accatcctct atcacaatgt ccgttccctc cctgccaaca aacacctttt      1620
     catgcacacc ctctcccaac accgcatgga tgcctttctc ctaaatgaaa ccttccttca      1680
     accctgtcgt tccatcagca ccactcccta cacctgcacc gtacagatgg ccccccaccc      1740
     cttgctcgag gcggagtggc gattggccac ctccatcacc accctgtccg gctacagcct      1800
     ctcctaaacg atcccaccga gcacctaatc ctcagtctct ttcttccctc cctcaccatc      1860
     accctggcca ctatttacat ccgcagtcat gttctcctcc cctacgattt cctctcccac      1920
     gttgaccgca attttacgac ctatgtgatt gccgccgacc ttaaccttgc ctcccatccc      1980
     attggtgaac tccagcggtg gcgtcagttt gtcgcctcac ttcggggtga caccgttccc      2040
     ctccctcgcc ctacgcgccc cgaaagcaac accccaatcg tccttgcctc tcccaacctc      2100
     cttgggcgcc ttcaggcgga agccctgacc ttattggcag tgaccacgcc cctgtactcc      2160
     ttaccattga cccccgcggc cgacctgacc gtgctcccca tcctcacccc ctcctaaact      2220
     tgtccgatta ttcccgcgcc gactgggatg cctaccgtcg ttccatagac acctcggtcg      2280
     ctagccaccc tctgcctctt cacacccctg cagatataga ccacgcctca tccttccttc      2340
     accagacagt tgctgacgcc gttcatgccc atattcctac taaagccatc atcccccccc      2400
     cctccctcca caggccgtcc tctcctccgt gaatcccacc acctctatcg ctcattcctg      2460
     cagacccatg actgggatac actccaatgc caccggagat ccaatgacat attagaaacc      2520
     tcttggccgc gaaaaaacgc cggtcctggc gacagacatg cacccatctt aatgcttcac      2580
     tccccatcaa ttcctccaag tactggcaag ccttccaccg cccttactgg cagtcgctct      2640
     gctcccacct accctctcct ccacaatgac catccttttc ctgacaatgc cagtaaggct      2700
     gaacatttcg ccacccacct ttccgatgtt ttttccgttc ctgacgatcc cagatttcac      2760
     ttctccctct ttcccgatgt ccacgagcgc accaatacct catccgcctc gctcgccctg      2820
     gttccagact tggaccacat ccctccttca gaacttaaca cgcctattac cgcccttgac      2880
     atccaactta cactatgcac aaaacgccac accgcccccg gccacgactg cttaacctac      2940
     aggcacctct gtgcctgccc cgactccttc catactgccc tagcctccct atacaatgtc      3000
     atcctctaca ccggcttctt ccctgacctg tggaaaacct cccgtattgt tatgttcccc      3060
     aaacctggca agcctccttc agatgcctct tcctatcgcc ctatcagcct cacctcggtg      3120
     ttcagcaagg ttttggaaac catcctttct cgccacattc atcagcatct ctgtcaacac      3180
     caactcctcc ccctctccca gtgtggcttc caacactcct tctctgccga tgaccaactc      3240
     ctccgctcac cacctccttt ctgtccagct aaattcccgt tgcaccgcca tctttgtctc      3300
     cctcgacatt gagaaggcct atgatcgagt atggcattcc ggtctccttt tcaaactcca      3360
     aacctacgcc cttcctatta attacgtccg tttatcgctt cctttctctc ccaccgccca      3420
     tcctatgtca ctgtcaacaa ctccaactcc tgcttgttct acccctctgc tggggtacct      3480
     ccggggtctg tcctctcccc cctcctctac ctcatttact cggctgacat gccacaaccc      3540
     cagcctcccg tccatctctt tcagtatgct gacgacaccg ccttcctagc cctcgccccc      3600
     tcccttgcac gttctcagca ccttctccag tctcacctct cccaattctc cacttggtgt      3660
     aaccagtggc tcctctccgt caaccccacc aaatcccagg caatcattat aggtcgtacc      3720
     acccgatcct tccgtcaccg cgacctgtac ctcacactcc atgaccgtcc catcccccaa      3780
     acctccaccc tcaaatacct tggcctcacc ctggatcgct ccctttcctg gaaccctcac      3840
     cttcaaacag tccgtcaaaa agccctctcc cgtctcaacc tactcaagct tctttctggc      3900
     cggacatggg gacttaaccc ctccacaatc ctatacacct atcgttccct gatgcgtccc      3960
     gtcctttgca gtttccatcc cgcttggata tccgcctccc ccacctatta taaatccctc      4020
     caaatcctag aacgccacgc cctccgcctc gcttaccgca tccgcctccc ttcccccacg      4080
     cggatcctct atgatctcat tcctttccct caccttctga agttcctcga gcatctccgt      4140
     atcctctaca ccacccgcaa aattgaatcc agtcaccctg ttgtctctcc catcctgctg      4200
     aaccccgggc ctctgccacg ccggtaccag catatccctc cctccctaca ccttcacact      4260
     ctccacatcc tctcccaggg taactttcgc cacctgcctc tcccagatga cgccctccgt      4320
     cctgatattt acccatccta tcagccctga tccctcccct ccccatatat tatgtgcccc      4380
     ccttccactc ccactcccct ccctcccctc cccacttgga tctccttccc ctccctcgga      4440
     gttcttacgt tttccttccc ctctcctccg aacctccccc cttcccgccc ctccgcgcct      4500
     cccttccttc ccctctcccc ctgcggggtc tccgtgcttt actttttaac agtgttttta      4560
     acagtgcacc aggctaaagt gtcgtgtcag tgtcaagtgg tgaacgtggt tttaagactt      4620
     cagcaaccgc cgcacaggca gaacactgtg ttgccatgtt ttttaattgt ctctctgtta      4680
     tcgtcgccat tcactgtgca aaatctgtgt tttttagcca ccgtggcagt ttttaatact      4740
     gactatgtgt gttttaaagc cttaatttca ttgtttttaa ttcgcctatt ttctctcctt      4800
     tttatgttaa attcacattt ttatctcttt tttattgtta aaatcaacat ttttatctcc      4860
     tgttttaaac taccattcac gttgtcaaat tcatatgtac mctgggctga agagcagcgt      4920
     acgaggctgc tgccagcctg ccccacgggg cattaaaata caataaagga aaaaa           4975
//
ID   Jockey-2_PPo repbase;    DNA;    INV; 377 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-377
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3115-3115 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..238
FT                 /product="Jockey-2_PPo_1p"
FT                 /translation="XNLNIIQRVQNRVLKTISNAPWFIRNSEVHEVLKVNT
FT                 VQQEIISIAERYKNRIADHHNPLVAVLPKCGHRRRLKRATII"
XX
SQ   Sequence 377 BP; 144 A; 72 C; 67 G; 93 T; 1 other;
     gtsaaattta aacatcatac agagggtgca aaaccgtgta cttaagacca tctcgaatgc        60
     tccctggttc attagaaact cagaggtaca tgaggtttta aaagtgaaca ccgtccagca       120
     ggaaattata tctattgctg agcgctataa aaaccgaatt gcagaccacc acaatccctt       180
     ggtcgcagtc ctaccaaaat gtggtcacag aaggagactc aaaagggcca caattatcta       240
     agaaatagat cctttaggat cttctgaaaa agaagaagtt tctcgatgga gaaaatgttc       300
     tgaaaactta atccttcctc acatttgcta aaagttttaa agactgattg cagataataa       360
     aataacaaaa aaaaaaa                                                      377
//
ID   Jockey-2_RPr repbase;    DNA;    INV; 4506 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4506
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3467-3467 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           277..1524
FT                 /product="Jockey-2_RPr_1p"
FT                 /translation="MAQMELTNSPGIESHGSCSASGIFTSNNNKTNNDVLD
FT                 KTSKSVKRSSTNKSEILKKKNKIKTKSTAVQRKLTRTQSLQSVNSAVSTTP
FT                 FSNTINFCTPNPFAPLSVKDDGEIPNANASASEKKSPKPPPIYISNVEDYL
FT                 QFCTTLTQLLGPSSFDCKSRVDKVMLSTKTIEGYRAAIKFLVENKAQYHTY
FT                 QLKQDKAFRVVLRNLHHTIPTEAIKEDLEGLGHKVRNVSNVKHPATKASLP
FT                 LFFVDLEPQENNQEIFKVTSVLYTRVKVEEPYKTEEIIQCKRCMQYGHSKS
FT                 YCNXTLXAKNALSTIFPQTAPSLGTSHLHVRCAKKGIMLPTGAAQXIRNFS
FT                 DXEESQGTKTAAVRSRVRIRELLHHLLQKTFLHYLXLRIRIRLSXQLIKGL
FT                 LTLESRGLRXTFHPLLLTLLLY"
FT   CDS           1932..4118
FT                 /product="Jockey-2_RPr_2p"
FT                 /translation="MWQRCTARLTKQYHHKNLVLSLANWGXNSWQVGTITL
FT                 NIRSGVVAQLILEDAPYSMFFLPSNYNVLSPDQPTYWPTALSKLPDILDIF
FT                 VTSQTSSQCTDIYTLTDLSSDHSPVLLVLTATPKTLPPRPSLITGPVDWDN
FT                 FQTLLDTKLNLSLSLKTADEVDEAVYTLTNAIQTSIWESTTHLHRKNTRQY
FT                 NLPIETRILIREKRRARALWQRTRYPSDKRMYFRLTRQLKRNLQKLKIEKY
FT                 DAFITNLTTDRKSLWTATRRLLSYKHTPSPLRREDGTWAKSDEDKATLFAH
FT                 HLTNVFTPHPDMTDDLHMDEIQTELDVPLPLSLPPKAFTPSDVKYTIKNLP
FT                 SRKSPGYDLITSEILRHLPKKAIIFLTYIYNSVLRTTYFPLSWKYSVVRMI
FT                 PKPGKPAHLPSSYRPISLLPTLGKVLEKLLLKRINPILSEFGVIPDHQFGF
FT                 RRHHSTVQQCHRVVDAIASALERKQYCSGAFLDVSQAFDRVWHPGLLFKLK
FT                 KHLPSTYYLILRSYLSDRFFQVSTGSAISSFSTVGAGVPQGSILGPVLYTV
FT                 YTSDIPVQPSTLLCTYADDTAILATSTHPSSASYKLQTHLHKIESWAKKWR
FT                 IKMNPQKCQHATFTLRRGSCPPVLFNSNPLPCTDLVRYLGLYIDKRLTWNP
FT                 HTRLKRQAMTKRAKLLYRLLGRRSKLPIELKRLIYNTILKPMWTYGLELWG
FT                 SAKPTNIRTVQTFQSKLLRQIADAPFYGD"
XX
SQ   Sequence 4506 BP; 1339 A; 1179 C; 764 G; 1204 T; 20 other;
     atcagctggt tcgccattgt acgtttcagt gtgtttaaat tttgctctgc aaacttatta        60
     atttattaag tgtttctagt gactatttag tgttaaattg tttcttattt tgtttattgt       120
     tgttgtttcg ttttgttaga cattgaagtg cgatgacaca ttgacaattt ttgtaaatag       180
     tttaatttga atagacttat ttttcgtagg ttaggtaagt tatttgaatt tgaaattttt       240
     aatagtgatt ggacacttag ttccgatagt agccgcatgg ctcaaatgga acttacaaat       300
     tcaccaggca ttgaatcaca tggttcgtgc agtgctagtg gaattttcac tagtaataat       360
     aataaaacta ataatgatgt tttggataaa acaagtaaat cagtgaaaag gtcaagcact       420
     aataaatctg aaattttgaa aaagaagaat aaaattaaaa ccaaaagcac tgctgtgcaa       480
     agaaagttga ctcgaaccca gtctctacag tcagttaatt ccgctgtttc cactacccct       540
     ttcagtaata ctatcaattt ctgcacacck aatccttttg cacctttaag tgtaaaagat       600
     gacggagaaa tcccgaacgc taatgcatcg gccagtgaga aaaaatcacc taagcctcct       660
     ccaatataca tctcaaacgt ggaagactac ttacaattct gcactacact gactcaactt       720
     cttggacctt catctttcga ttgtaaatcg agagttgaca aggtaatgtt atcaacaaag       780
     acaattgagg gatacagagc agcaatcaag ttcttggtag aaaataaagc acagtaccac       840
     acttatcagc taaagcaaga taaggcgttt agggtggtat taagaaatct acaccacact       900
     attcctacag aagccatcaa agaagatctg gaaggattag ggcataaggt gagaaatgtc       960
     agcaacgtga aacacccagc tactaaagcm tcacttcctc tgttttttgt ggacttggaa      1020
     ccgcaagaga acaaccagga aatattcaag gtcacktcag tcctgtacac wcgagttaag      1080
     gtwgaggaac cctacaaaac tgaggaaata attcagtgta aaagatgcat gcagtatggc      1140
     cacagcaaat cttactgcaa ttawacmcta sgtgcaaaaa atgcgctaag taccattttt      1200
     cctcagactg cccccagcct agggacatcc cacctacatg tgcgctgtgc caagaaaggc      1260
     attatgctac ctacaggggc tgcacagtkc ataaggaact tcagcgactw cgaagaaagt      1320
     caagggacca aaacggccgc agtccgcagc cgcgttcgca tcagggagct gctccaccac      1380
     ctactccaaa agactttcct ccattaccta cawcttcgca tccgcatccg tctcagcmac      1440
     caacttatca aaggccttct tacgctggag tcgcggggtc tccgastaac stttcatccg      1500
     cttctactga cgttactact gtactgacct ctttcatctc tgagttcaaa tcactcatca      1560
     atcctctcat cagccttctc actaccctgg tgactgatct cattcctcga cttgtaaaat      1620
     aaattcctca tcactagcaa tacttctttg gaacgcaaac gggctgaatw cccacaaaga      1680
     cgaactagac attttcttac atgacaaact aattgacgta gccctaatta cggagacaca      1740
     ctttaccgga cgatcttact gcaacgtaac tgactacact acttacagag cmgaccaccc      1800
     ggacgacact gcccatggtg gcgcagccat tctcatccgc tcctctttaa ttcacagcct      1860
     gctcctcact gagcaaactg atgctctcca gtccgtggca gttacattgt cttgccascc      1920
     attctccctg aatgtggcag cggtgtactg cccgcctaac aaagcaatat catcacaaga      1980
     atttagtact ttctttggca aactggggcc waaattcttg gcaggtgggg actataacgc      2040
     taaacatccg cagtggggtt gtcgcacaac taatcctaga ggacgcaccc tactcaatgt      2100
     tctttcttcc atctaactac aatgtactat ctcctgatca accaacttac tggccgacag      2160
     ctctctctaa actgcctgac atcctagaca ttttcgttac ctctcagact tcttcacaat      2220
     gtacagacat ctacactctt actgatcttt cttctgacca cagtcctgtg ctgttggtac      2280
     taactgcgac acctaagaca cttccgcctc gcccttctct aattacggga cctgttgact      2340
     gggacaactt ccaaacttta cttgacacta aacttaatct atctctctct ttaaaaactg      2400
     ctgacgaagt tgatgaagca gtttacacgc tgactaacgc aatacagact tccatctggg      2460
     aatcgactac tcacttacat cggaagaata ctagacaata taacttacct atagaaacac      2520
     gaatactcat aagagaaaaa aggagagccc gagccctctg gcaacggaca cgttatccta      2580
     gtgacaaacg gatgtacttt agactcacaa gacaactgaa aagaaattta caaaagctaa      2640
     aaattgaaaa atatgacgcc ttcattacaa acctgactac agaccgtaaa tctctctgga      2700
     cagctacacg caggctactg tcctacaaac acactccttc tccactcaga cgggaagacg      2760
     ggacttgggc gaaatcggac gaggacaaag ctacactgtt tgctcatcac ttgacaaatg      2820
     tctttacacc tcatcctgat atgacggacg acttacacat ggatgaaata caaacagaac      2880
     tggacgttcc acttcctctc tcactaccac caaaagcctt tactccttct gacgttaaat      2940
     acactatcaa gaatcttcca tctagaaagt ctccaggata tgacctcatc acctctgaaa      3000
     ttctccgcca cctacctaaa aaagctatca tcttcctcac ctacatttac aactctgtcc      3060
     ttcgtactac atactttccg ctatcctgga agtattcagt ggtgcgaatg attccgaaac      3120
     ctggaaaacc tgctcacctt ccctcatcct acagacctat cagcctactg ccgactctag      3180
     gaaaagttct tgaaaaactg ttacttaagc gtattaaccc catattgtcg gagtttggtg      3240
     ttataccaga ccaccaattt ggtttcaggc gtcatcatag cactgttcaa caatgccacc      3300
     gggttgttga tgctattgct tcagcactgg agagaaaaca gtattgctca ggggcattct      3360
     tagacgtaag ccaggctttc gatcgtgttt ggcatcctgg attactgttc aaactaaaaa      3420
     agcatcttcc ctcaacatac tacctcattc tgcgctccta tctttcagat aggttctttc      3480
     aagtcagtac tggctcagca atctcttctt tctcgacagt gggggcggga gtgccgcagg      3540
     ggagtatact tggccccgtt ctctacacag tatacacatc agacatacct gtacaaccct      3600
     ctacactact ctgtacatat gcagacgaca cagccatact agccacaagt acacatcctt      3660
     catcagcttc atacaagtta cagacacact tacataaaat agaatcctgg gcaaagaagt      3720
     ggcggattaa aatgaaccca cagaaatgcc agcatgccac gtttactctc cggcggggct      3780
     cctgtccacc tgtcctcttc aacagcaatc ctcttccttg tacagatctg gtgcgctacc      3840
     ttgggctcta catagacaaa cgactcacgt ggaacccaca cactagactt aaaagacaag      3900
     caatgacgaa acgtgcgaaa ctgctttaca gactacttgg acgacgctcc aaattgccca      3960
     ttgaactcaa acgcttaata tacaacacta tcctcaaacc tatgtggact tacggactag      4020
     agctgtgggg ttcagccaaa cctacaaaca tacggacagt acaaacattt cagtcaaaac      4080
     tcctccgaca gatagctgac gctcctttct acggtgacta acctcactct tcacamcgac      4140
     ctcaacattc ccttcataga ccaactcgcc aagactaaat atcaaaaatt ccatactgct      4200
     ctctctacta gctcaaatcc tcttgtacag tctctcgcct cctctgacat ccctaacaat      4260
     actcctcgcc gactgaatcg ccagtggccc cgcgacttcc ttgcagtctg aagaactaaa      4320
     tctctcctct ctcctactca tattctcctc ctcacattcc cctctctcmt atagagagtg      4380
     ctaccgctgg gtagcttctc tcctcctgct ctcctcccgc accagttcat ctcattcacc      4440
     tcctatttac ttattgtata tatttataca gattgtaaat tacaaaataa ataaaaaaaa      4500
     aaaaaa                                                                 4506
//
ID   Jockey-3B_LMi repbase;    DNA;    INV; 2095 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 19.11, Created)
DT   11-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2095
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3106-3106 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 2095 BP; 383 A; 841 C; 302 G; 569 T; 0 other;
     cacaaaacga aacaccgccc cggtcacgac cggctgacct acgccacctc cgcgctgccc        60
     ccttccttca tgaagtcttg ccaccctata caatgtcatc cttttcactg gcttttaccc       120
     cgacctgtgg aagacctccc gtattctcat gttcctcaaa cccgacaagc ccccatccca       180
     gacctcatcc taccgtccca tcagtcttac ctccgtgttc agcaaggtcc tggaaaccat       240
     cctttcccgt cgtatccacc agcacctcca ccgccaccag ttcctccccc tttcccaatg       300
     tggcttccga ccctccttct ctgccgacga ccagctcctt cgcctgactc atctcctctc       360
     cctccaactc aattcccgtc gctccgcaat ttttgtatcc ctcgacatcc aaaaagccta       420
     cgaccgtgta tggcattccg gtctcctctt caagatccag ttctacgccc ttcctattaa       480
     ttacgtccgc ctcatagctt ccttcctcac ccgccgcccc tcctatgtca ctgtctgcaa       540
     ctccgactcc cgtttgttct acccctccgc cggggtgccc caaggctccg tcctctctcc       600
     cctcctctat ctcctttatt ctgccgacat gcctcaaccc aaacctcccg tctatctcct       660
     tcaatatgct gacgacaccg ccttcctagc cctcgccccc tcccttgccc gttcccaggt       720
     tttgctccag tcccacctca ccgagttcgc ctcgtggtgt aaccggtggc tcctatccgt       780
     aaatccagac aaatcccagg caatcgtcat aggtcgtacc acccgctcct tccgtctcca       840
     cgatttctat cttaccctcc acaaccgccc aatccgtcac acccccaccc tcaaatacct       900
     tggccttacc cttgaccgca aactttcctg gaccccgtac ctcaaatccc tccgtgagaa       960
     agctctgtcc cgcctcaacc tccttaaact ccttaccggc cggacgtggg gcctccaccc      1020
     ttccactgtc cttcacacct ataaatccat catgcgcccc gtcctctgtt ccttccaccc      1080
     cgcctggata tcggcccctc ctaccttcta caaatcctta cagatcctgg aacgccacgc      1140
     cctccgcctc gcataccgta tcagactccc ttcccccacg cggatcctct atgacctaat      1200
     ccccttccct cctctcctac aacacctcga acatctccga ctcctttaca ctacccgaaa      1260
     aatagagtcc caaaaccctc tggtataccc tattctcacc aatcccgggc ctctgccacg      1320
     cctccaccaa actatccctc ccggccttca cctacataca ctccgtatcc tttcccaggg      1380
     caacttccgc acccttccct taccggataa cgaacttcgt cccgatatct acccctccta      1440
     ccaactctga tcccttcccc gtagcatcag cgcccctccc ctctctcccg tccttttcct      1500
     tcccacccgc ttggctaccc ctctcccatg cccagagtct cgtcaatccc tctttcccct      1560
     cctttctccc tctcccctcc cctcccccct cccccgcgct tcccccatcc ctgtcccacc      1620
     tcctccccct ccaccccccc ccgcgggggc gtctcgacct tttaaacgtg cacagtgcca      1680
     gtgtgtccag tgacattgtg tgtttttaat cagtgcctcc gcgatcagcg tcaacaagtt      1740
     ttaccgtgtg cgccgtcaac tgtcttcgtg tttgtccttg tgtttcttcc aatgtacttt      1800
     taaaccgccg ccgtggcctt gaacagtttt actgaatatg tgtgctttta ttaccgcttg      1860
     attgtcctgt tttcgttctc ccatatatgt ttgtctcttt gtccatttac gtttagtcct      1920
     tcaaaaactc agcttgtcta ttgtttttaa aatctcccat tttattcatc tgttttatgt      1980
     tccttcactg tttgtcatta catgtatttc gcagggctga agagcagcca acgcagctgc      2040
     tgccagcctg ctgactgtaa acagttggct ttaaaataac aataaaggaa aaaaa           2095
//
ID   Jockey-3_BTa repbase;    DNA;    INV; 5188 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5188
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 705-705 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..1994
FT                 /product="Jockey-3_BTa_1p"
FT                 /translation="MAGVGDNQPGNGNPNSSYDSIKNNMVDELLNTDLKPV
FT                 LECESYHESLKAYLTKSQSVLKVISKENKVLANENSSLSAQLKSFLDNQKE
FT                 NETKNQSLISSLQSQINELKQVKNVNVATSSATVKNITKTNPIRKTQTTQS
FT                 GQLKLTQFTTPRNDAVVTSNSVPTENKFAALQNEEEXDITTNLEDDSDDTS
FT                 LSEDSNSDPEFRTKRLAFRRQQRKKRKRGDSKNXSDDPAPKDKSSLKSDSS
FT                 KISDKSPKVLPPPPIKVIGIKEYQVIKNILTEASENEEFVLKFLGNETWKV
FT                 NTLNDDIFRKTSEKLNEKGIQWYTHSNKNTRNIQVLCKGLPPSIPEEEIIE
FT                 DLLSKNLKIKSAVCLKKRVEKIQKKTDKNTNPSDTPTEEVSENQTSPAKTI
FT                 KEYELVNIPVHQLDFDHTESSENIFKIKAIAHTIVRIEPIKVDNKIVPQCK
FT                 RCQGFQHTANFCAKTPRCVKCAGKHLSSDCVFKGRITNPKCINCGTVGHPA
FT                 SYRGCPFAKDFQIARKKQLKAKNAKNSPPDPNTFPNLGKNKNKNAGNSVPP
FT                 KKLNKTFAQAAASNSNPTTQDESAILIKVLLQTIESLNSQLRILTEKVSKL
FT                 ESKN"
FT   CDS           join(1997..4165,4059..4862)
FT                 /product="Jockey-3_BTa_2p"
FT                 /translation="MCNTSDSSFNLLSQETEETVINFDDLSLLRARNNQKT
FT                 LTLLAWNCGGLTRVKAEEFNVTLRDFNVDIALLSETWFTRTDFKRYFSGYK
FT                 MYNSLHPSNKHRGGSSILIKETIKHNLIKIIETDTFQTVVINVQSEIDTFN
FT                 IASLYTPPRSVLTKDDYIGFLDELGPKYLVGGDWNAKNPRWGSRIVNPKGE
FT                 SLLEAVNFSGGNFISPGKPTNFPSIPDHRPDLIDFFIFKDINLIDQTSCDT
FT                 LMSNEKGHAKVFLEIFTNPIIENRPPAICSKRTNWDKFRQDLEKIIDNSVP
FT                 VLSPADIDRETELLVENIRVCATANTPVASTNIKPYAIPKNLLKLIRLKRK
FT                 AKRTATNSHFPEDNSNYNRLNTIVKKRMQEYLNFKFEKFINSLSPTADKNY
FT                 SLWAATKYLKKPKQLKFPISKPDKTWANSDAEKAEVLADHFEAAFQPHDDL
FT                 EVQTDSDAPTSNSDSESEQGEISALKPRKVRKIPPVKIKSISPSEILKEIK
FT                 GKIKAKKAPGFDKISGLILKNLPKKAIMKLTVLFNAVIRLKYIPSQWKMAE
FT                 IFVLLKPDKPPTEASSYRPISLLPVIGKLFERLYIKRLNEIVSKQNLIIDA
FT                 QFGFRSKHSTVDQLHRITKFIEDSLERGEYCVAVFLDVAQAFDRVWHERLI
FT                 EKLYKMLPCNHVELLSSFLKGRQFRVRYENTTSGFRPIRAGVPQGSCLSPP
FT                 SLFPFHHRHPTVWERGEIGSIRRGQEFHRVPAFPPLLYSLFTTDIPQSGRG
FT                 GKLGVYADDTLVLAASKSYREARHNAQCHLNKIHRWTNKDKTKLNASKSVE
FT                 VVFTNRPFTHIPLLLGENEIPRDTVARYLGLHLDSRLKWGSHIKKKVAQLK
FT                 LKFNDMQWLLGRKSKLSLHIKLLLYKSMLRPVWSYGCQLWGCAAKSNLEKI
FT                 EIMQMKILRSIVKAHWYERNADIRADLNIDSVEEYITKLYNSYEARLHRHP
FT                 NPEALALLERDQCIRRLKRRKPHELGIQGFTKFSFV"
XX
SQ   Sequence 5188 BP; 1782 A; 1080 C; 920 G; 1404 T; 2 other;
     gcagtgctgt ctgataagct aagccgaacg gtcgttctct cagtatagtg ctcccctcat        60
     cagatctgat aatttgttcg aattttctat gctgcctcgg cagctcaaat tttttcgaag       120
     tgttcaaacc taacctcaaa tcataaattg caagctaaat cagtgttttc cttcactacc       180
     cctgcgtgat ggcgggggta ggagataatc aaccaggtaa tggcaatcca aattcatctt       240
     atgactctat taagaacaac atggttgatg aactcttaaa cacggatctg aaaccagtgc       300
     ttgaatgcga atcctatcac gaatctttga aagcgtacct gactaagtcg caatcagtgt       360
     taaaagtgat ttctaaagaa aacaaagtgt tagccaatga aaacagttct ctttcggctc       420
     agttaaaatc ttttctagac aatcaaaaag aaaatgaaac taaaaaccaa tcactaattt       480
     cgagccttca atctcaaatt aatgaactca aacaagtgaa aaacgttaat gttgctacct       540
     cttctgctac agttaaaaat attacaaaaa cgaatcctat tcgtaaaacc caaacaactc       600
     agtctgggca gttaaaacta acgcaattca caactccaag aaatgatgct gtagttacat       660
     ctaattcagt acctactgaa aacaaatttg ctgctcttca aaatgaagaa gaaatkgata       720
     taaccacaaa cctagaagat gattctgatg acacttctct ctcagaagat tcaaactcgg       780
     acccggaatt ccgtacaaaa cgcctcgctt tccgccgcca gcagcggaaa aaaagaaaac       840
     gcggtgactc taagaacgkc tccgatgatc cagctcctaa ggataagtct agccttaagt       900
     ctgatagttc taagattagc gataagtccc ctaaggttct tccccctccc cctattaaag       960
     taataggtat taaggaatat caagttatta aaaatatcct cactgaagct tctgaaaatg      1020
     aagaattcgt gctaaaattt ctaggaaatg aaacttggaa agttaatact ttaaatgacg      1080
     atattttcag aaaaacctct gaaaaattga atgaaaaagg tatccaatgg tacacacatt      1140
     ccaacaaaaa cacaaggaat attcaagtct tgtgtaaagg ccttcctccc tcaattccag      1200
     aggaagaaat tatagaggat ttactatcga aaaaccttaa aataaaatca gctgtttgcc      1260
     ttaaaaaaag agttgaaaaa attcagaaaa aaactgataa aaatacaaat ccatcagata      1320
     ccccaacgga agaagtatct gaaaatcaaa cttctcctgc taaaactatt aaagaatacg      1380
     aattggtgaa cataccagtc caccaactcg actttgatca tacggaatcg tccgaaaaca      1440
     tttttaagat taaagccata gctcacacca tcgttcgcat tgagcccata aaagtggata      1500
     acaagatagt gccccagtgc aagcgttgcc agggcttcca acatactgca aatttttgtg      1560
     caaaaacgcc tcgctgcgta aaatgtgcag gcaaacacct atcttctgat tgtgtgttta      1620
     aaggcaggat tactaatcca aaatgtataa actgtggcac agttggacat ccggcaagtt      1680
     atcgcggctg cccatttgcc aaagatttcc aaatcgctcg taaaaaacaa ctcaaagcta      1740
     aaaatgctaa aaatagcccc ccagatccta atactttccc aaatttgggt aaaaataaaa      1800
     ataaaaatgc tggaaattct gttccaccta aaaaattgaa caaaactttt gctcaagccg      1860
     cagcatccaa ttccaatccg acaacacagg atgaatcagc gattcttatt aaggtgttac      1920
     tacaaacaat cgaatcctta aactcacaac ttaggatact cacagaaaaa gtgagtaagt      1980
     tagaatctaa gaattaatgt gtaataccag tgactcatct tttaatttgc tttcacagga      2040
     aacggaggag acggtcatta acttcgatga cttatctctg ctccgagcta gaaacaatca      2100
     aaagacatta actttattgg cttggaattg cggcggtctc accagggtga aggccgagga      2160
     attcaatgtc acgctaaggg attttaatgt ggatatagcc cttctgtcgg agacctggtt      2220
     caccaggaca gattttaaaa ggtatttttc gggttataaa atgtataact cacttcatcc      2280
     atcgaataaa catagaggtg gttcttccat tctaattaaa gaaacaatca agcataatct      2340
     gattaaaatc atcgaaaccg acacctttca aactgtcgtg ataaatgttc aatcagagat      2400
     tgatacattc aatattgctt cactctatac ccctcctcgc agtgttctca caaaagacga      2460
     ttatatagga ttcctggatg aactgggtcc taagtatctg gtgggcgggg attggaatgc      2520
     taagaatcct agatggggat cgaggatagt taatcctaaa ggtgaatctc tgctagaagc      2580
     cgtcaatttt tcaggtggaa acttcatctc accgggaaaa ccaacaaact tcccatcgat      2640
     acctgatcac cgacctgatt taatagactt tttcattttt aaagatatca atttaatcga      2700
     tcaaacctca tgtgacacac ttatgtcaaa cgaaaaaggt catgccaaag tctttttaga      2760
     aatctttact aaccctatta ttgaaaatcg tccaccagca atatgttcaa aaagaacaaa      2820
     ttgggataaa ttcagacaag accttgaaaa aattatagat aatagtgttc cagtcctctc      2880
     tccagcagat atcgataggg agacagaatt attggtggag aatatcagag tgtgtgccac      2940
     tgctaacaca ccagttgcct cgaccaacat taaaccctat gcaataccaa aaaatctcct      3000
     taaacttatt cgtcttaaac gaaaagcaaa aaggactgca acaaactccc atttccctga      3060
     agacaactcc aactacaata gattaaacac catagttaaa aaaagaatgc aagaatatct      3120
     aaattttaaa tttgaaaaat tcattaactc tctttcccca actgccgata agaattactc      3180
     tttatgggca gccactaaat accttaaaaa accaaaacaa ttaaaatttc cgatcagcaa      3240
     gcctgataaa acttgggcaa actcagatgc tgaaaaggcg gaggttcttg cggatcattt      3300
     tgaggcagct tttcagcctc atgatgatct ggaggttcaa acggactctg atgctcccac      3360
     cagtaattct gactcggaat cggaacaggg ggaaatatcc gcattaaaac cccgcaaggt      3420
     cagaaagatt ccaccggtaa aaataaaatc tatctccccc tcggaaatcc taaaggaaat      3480
     caaagggaaa atcaaagcaa aaaaagcacc aggctttgac aagatctctg gtctcattct      3540
     taaaaacttg cctaaaaaag caataatgaa actaacagtg ttgtttaatg cagtaatccg      3600
     tctcaaatac ataccatcac agtggaaaat ggctgaaatt ttcgtgcttt taaagccaga      3660
     taagcccccc actgaagcct catcttatag acctatctct ttgctgccag taataggcaa      3720
     attatttgaa aggctctata tcaaaagatt aaatgaaatt gtttctaaac aaaatttgat      3780
     tatagacgct caatttggtt ttcgttcaaa acactctacg gtggatcaac ttcatcgtat      3840
     cactaaattt atagaggatt ctcttgagag gggagaatac tgcgtggcag tttttctgga      3900
     cgtagcgcag gcgtttgatc gcgtctggca cgagcgtctc atcgaaaagc tttataaaat      3960
     gctcccatgt aaccatgtgg agctcttgtc atcctttctc aagggtagac aattccgggt      4020
     taggtatgaa aatactacct cgggtttcag acctataagg gcaggagttc cacagggttc      4080
     ctgcctttcc cccccttctc tattcccttt tcaccacaga catcccacag tctgggagag      4140
     gggggaaatt gggagtatac gccgatgaca cgctcgtgtt agcagcgtcc aagagctaca      4200
     gggaggcaag acataatgct caatgtcacc ttaataaaat ccatcgctgg acaaacaaag      4260
     acaagacgaa attgaatgct tcgaaatcgg tagaggtggt ctttactaac agacccttca      4320
     ctcatattcc tcttctccta ggagaaaatg aaattccacg cgacaccgtc gcgcgttatc      4380
     ttggccttca cctggattcc aggctcaagt gggggtcaca tataaagaaa aaagttgcac      4440
     aattgaaact taaatttaat gatatgcaat ggctattagg ccgtaaatct aagctatcct      4500
     tgcacatcaa attgctcctc tacaaatcaa tgttgaggcc agtttggagt tatggctgcc      4560
     aattgtgggg ttgtgcagcc aaatcaaact tagaaaagat agaaatcatg caaatgaaaa      4620
     ttcttagaag cattgttaaa gctcattggt atgagaggaa cgctgatatt cgcgctgacc      4680
     tcaatattga ttcagtagag gagtacataa ctaaattgta caactcttat gaagctcgtc      4740
     tgcataggca tcccaatcca gaagcgctcg cgctcttgga aagggaccaa tgtattcgga      4800
     gactcaaacg acgaaaaccc catgagcttg gaatccaggg gttcacaaaa ttctctttcg      4860
     tttaaactat ttgcctccct gtgctcttag gacacaatca ggaggactag gactttgact      4920
     ggtaacggtt gtccgctttt tcaagctaaa gaaaaaagac atttttatta cagaaataat      4980
     catgtcttta ttactctcct cattttgtta gaggtagtat catcttgtgc agataaaagt      5040
     gtttagtctg tacagttata atgtgtttaa attttaaata ttaagttaat cttcagttaa      5100
     cagttaagtt tagcttttaa agatatttta tatatctaaa gtgtttttat gtaccactat      5160
     gtaaagtact aataaaaaaa aaaaaaaa                                         5188
//
ID   Jockey-3_CQ repbase;    DNA;    INV; 4427 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4427
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 114-114 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           146..1540
FT                 /product="Jockey-3_CQ_1p"
FT                 /translation="MRQNKGKRKSSEDLVVTSVKRLNAKPANGNRKRKQPL
FT                 LRSDSDSECEVNPPIPLTNSFGVLSETDDKEPSPRTEPSAVEKRVKAPPIV
FT                 VTSVSDLASFRTQLKNCKETCNLKVSFQLGRRGECRLLTESLQDHQTFVGY
FT                 LKNHKHNFYTYETKNARPFKAVLKGLSNDLSVDEIKNELKVLLGFAPSQVI
FT                 PMKKKSNGNISRFGLTSQFYLIHFNRNEINNLKLLDKVQFLFHVRVKWEHF
FT                 KKHGGNGQNLTQCRRCQAFGHGTDHCAMVPKCMVCGDSSHDKDNCPVKEVT
FT                 QFKCANCGGNHKSNFWDCPIRKKVLDSRAKHQPKSKPKFSQSQVVPASLNQ
FT                 TFVLSHSNNSRNTPTVEKLGNNNGISYANVVSGSSTNFKSSTNLSEIGQVP
FT                 QISFENFSAGNALGSSDLGDVTFEKMTFLQNSLFGLIQTMSNATSMMEAIQ
FT                 IGLKFANDVVLTLKFNHGSK"
FT   CDS           1530..4187
FT                 /product="Jockey-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDLSNSINIMNFNARSLKAKENEFFNFLRVHNVHVAV
FT                 ITETFLKTGTYLKSDPDYKVITNNRMNRNGGGVAIVIHRSMTYSTLRDFKL
FT                 KVIESLGIELETSFGKIMIAAAYLPFQCTGENKNYFKGDLNKLTRHRSRFL
FT                 IIGDFNAKHQSWNNSKVNSNGKILFRDCTSGLYSVLYPNGPTCFSSVRNPS
FT                 TIDLVLTNQSQYCGPLVTHADFDSDHLPVTFSLSHEAVTRPNSSVFNYHKA
FT                 NWDRYQHHIENNLNHDFVLETKADIDSALESLTNAILDARNIAIPKVQVKF
FT                 DSPIIDDDLQLLIRLKNVRRRQYQRSRDPALKRIQKDLQKVIDHRFTLLRN
FT                 EKFARDVEQIKPYSKPFWKLSKVLKKPQKPIPSLKDGDNILLTNGEKAQKL
FT                 AQQFESAHNFNLNVLSPIENQISIEFQNIVEQEFSSDEVFNTDLNEIKSII
FT                 KKFKNMKAPGEDGIFYILIKKLPEATLSSLVKIFNKCFDLAYFPSSWKNAK
FT                 VIPILKPDKNPAEASSYRPISLLSSISKLFERIILNRMMTHINENSIFADE
FT                 QFGFRLGHSTTHQLLRVSNLIRSNKSEGYSTGAALLDIEKAFDSVWHKGLI
FT                 AKLKRFNFPIYIVKIIQNYLTDRTLQVCYQNSKSDQLPVRAGVPQGSILGP
FT                 ILYNIFTSDLPDLPPGCQKSLFADDTSISAKGRSLRVITRRLQKSLDIFNS
FT                 YLKEWKITPNAAKTQLIIFPHKPRADFLKPKSHHIIKMNEVNLKWEDQVKY
FT                 LGLGFDKNLTYKDHIESIQVKCNKYIKCLYPLINRNSRLCLKNKLLIYKQI
FT                 FRPAMLYAVPIWTSCCLTRKKKLQRIQNKILKMILKLPPWFSTSELHQLAE
FT                 VDTLDVMSNKIIDAFRQKSLQSSAALIRSLYSL"
XX
SQ   Sequence 4427 BP; 1448 A; 797 C; 787 G; 1393 T; 2 other;
     tttcaaaaca aaattcacag tctttttaaa gactacctga gttattttcc aaaattctaa        60
     acagtctttt caagactaac cccacctgaa attttgttgt attttacaaa cgaagccatc       120
     tttttaagag aactttgctt gcaaaatgcg tcaaaacaaa ggtaaacgca aatcttctga       180
     agatttggtc gttacgtcgg tgaagcgttt gaacgctaaa ccggctaacg gaaacagaaa       240
     aagaaaacag cctcttctga ggtctgattc tgattctgaa tgtgaggtca atcctccaat       300
     tccattgaca aacagtttcg gtgttttatc cgaaactgat gacaaggaac cttctcctcg       360
     tactgagcct tctgccgtcg agaaacgagt aaaggctccg ccaattgtwg tgacttccgt       420
     ctccgatttg gccagctttc gaacgcaact gaagaattgc aaggaaactt gcaatttgaa       480
     agtttcgttc cagcttggtc gaagaggaga atgtcgcttg ttgacggaat ctttacaaga       540
     tcaccaaact tttgttggtt atttgaaaaa ccacaaacac aatttctaca cgtatgagac       600
     caagaatgct cggccattca aggcggtctt gaaaggtctc tccaacgact tgtcggtgga       660
     tgagatcaaa aacgaactta aggtgttgct tggctttgcc ccatcccaag taataccaat       720
     gaagaaaaaa tcaaacggga atatttctcg ctttggtttg acttcacaat tttatctgat       780
     tcatttcaac agaaatgaaa tcaacaattt gaaacttttg gacaaagtwc agtttttgtt       840
     ccatgtacgg gtaaagtggg agcattttaa gaaacatggc ggtaatggcc agaatctgac       900
     ccagtgccgg cgttgccagg cattcggtca cggtactgat cattgcgcca tggttccaaa       960
     atgcatggtt tgcggggatt cttctcacga caaggacaat tgtcccgtga aagaagtcac      1020
     ccaatttaaa tgtgcaaatt gtggtggaaa tcacaaatca aatttctggg attgccccat      1080
     cagaaaaaag gttttggatt ctcgtgctaa gcatcagccg aaatccaaac cgaaattttc      1140
     tcaaagtcag gttgtacctg catctttaaa tcaaacgttc gtgctgtctc actcgaacaa      1200
     ttctagaaat acccctaccg tggaaaagtt aggtaacaac aatggcattt cttatgctaa      1260
     cgtcgtttcg ggttcatcca cgaattttaa atcctctacc aatctttctg aaattgggca      1320
     ggtacctcaa atctcatttg aaaatttttc tgctggcaac gctttgggat cttctgatct      1380
     cggcgatgtt acgtttgaaa aaatgacttt tttgcaaaac tcactgtttg gtttgattca      1440
     aacaatgagt aatgctacat ccatgatgga agcaatccag attggattaa aatttgcgaa      1500
     tgatgttgtt cttaccctga agtttaatca tggatctaag taattccatc aatattatga      1560
     attttaatgc tcgctcttta aaagcgaaag aaaatgaatt tttcaacttt ttacgagttc      1620
     ataacgtgca tgttgctgtt ataaccgaaa catttttaaa aactggcact tatttgaaaa      1680
     gtgatccaga ttataaagtt ataactaata accgaatgaa tcgaaatggc ggtggagttg      1740
     caatagttat ccaccgtagt atgacttata gcacgttacg tgactttaag ttaaaagtta      1800
     ttgaaagttt gggcattgaa cttgaaactt cttttgggaa aattatgatt gcagctgcat      1860
     atttgccatt ccaatgcact ggggaaaata aaaattattt caaaggggat ttgaataaac      1920
     ttactcggca tagatctcga tttttgatca tcggtgattt taatgccaaa caccaatctt      1980
     ggaataattc aaaagtaaat tccaatggta aaattctgtt cagagattgc acttctggtc      2040
     tttattcggt tttatacccg aatgggccaa cttgcttttc ttctgttaga aatccatcaa      2100
     caattgattt ggttttgaca aatcaaagtc agtattgtgg tcctttagtg actcatgctg      2160
     attttgattc tgatcacctt ccagtaactt tttcactttc tcatgaagca gttaccagac      2220
     ccaatagttc tgtgtttaat taccacaaag ctaattggga caggtatcag catcatattg      2280
     agaataattt aaatcatgat tttgttttag aaaccaaagc tgatattgat tcagccttgg      2340
     aatctttaac taatgcaatt ttggatgcta ggaatattgc tattcctaaa gtccaagtca      2400
     aatttgattc tcccattatt gatgacgatc ttcagcttct gattcgtctg aaaaatgttc      2460
     gccgaagaca gtatcaacgt tctcgtgatc ctgcactgaa gcgaattcaa aaagatttgc      2520
     aaaaggttat tgaccacaga ttcactctcc tgcgaaatga aaagttcgca agagatgtcg      2580
     aacaaattaa accttattcc aaaccttttt ggaaactttc aaaggttctt aagaaacctc      2640
     aaaaacccat cccttcttta aaagatggtg ataatattct attaactaat ggggaaaaag      2700
     ctcaaaaact tgctcagcag tttgagagtg ctcataattt caacttgaat gttttgagtc      2760
     ctattgaaaa tcaaatttca atagaatttc agaatattgt tgaacaagaa ttttcatcag      2820
     atgaagtttt taatacggat ctgaatgaaa taaaatctat tatcaaaaaa tttaaaaata      2880
     tgaaagcccc tggtgaggat ggcatttttt acattttaat taaaaaatta ccagaagcaa      2940
     ctttaagtag cttggtcaaa attttcaaca aatgttttga tttggcatat tttcccagta      3000
     gttggaaaaa tgccaaagta attccgattt tgaaaccgga taaaaatcct gctgaagcct      3060
     caagctatcg gcccattagt ttgctttcat ctattagtaa attattcgaa agaataattc      3120
     ttaatagaat gatgacgcac attaatgaaa attcaatttt cgctgatgag cagtttggat      3180
     ttcgccttgg gcattcaact actcatcagt tgttgagagt ttcaaattta attcgaagca      3240
     acaaatctga gggctattct actggcgctg ctcttctaga catagaaaaa gcatttgaca      3300
     gtgtttggca taaaggtttg attgcgaaat tgaaaaggtt taattttccg atttatatcg      3360
     tgaaaattat tcaaaattat ttgacggatc gtactctgca ggtatgttat cagaatagca      3420
     aatctgatca actacctgta cgtgctggcg tccctcaagg aagcattttg ggtccaattt      3480
     tatacaatat ttttacttct gacttgcctg atttgccccc aggatgtcag aaatcacttt      3540
     ttgctgatga cacaagcatc tccgccaaag gcagaagcct tcgtgtcatc acaagaagat      3600
     tacaaaaaag cttggatatt ttcaattctt atttgaaaga atggaaaatt actccaaatg      3660
     ctgcaaaaac tcaacttatt attttccctc acaaaccaag ggctgatttt cttaaaccaa      3720
     aaagtcatca cattataaag atgaatgagg taaatttaaa gtgggaggat caagtgaaat      3780
     atcttggact tggttttgac aaaaacctta cttacaagga tcacattgaa agtatccagg      3840
     ttaaatgtaa caaatatatt aaatgtttgt atccacttat aaacaggaat tctagacttt      3900
     gtctcaagaa taaactgtta atttataaac aaattttcag acctgccatg ctttatgctg      3960
     tgccgatctg gacaagctgt tgcttaacca ggaagaaaaa acttcagagg attcagaaca      4020
     aaattctgaa aatgattctg aaacttcctc cctggttcag caccagtgaa cttcatcaat      4080
     tagccgaagt tgacactttg gatgttatgt ccaataagat aattgatgca tttcgacaaa      4140
     aatcattgca gtcttcagct gcattgatcc gctctttata tagtttataa gttagtttta      4200
     aggtatccct tttccctttt gtacatgtag gacctcctac atttgaaatc actgaatagc      4260
     gaaagctaca atatttcatg aataaatgaa agttgctagt atttaaaatt gaggtgaaaa      4320
     gtcatcgttt gtgattggac actcaataat attttaactg aatgaatgta catggaaaag      4380
     aaatttgaat aaatataaat taaaaaaaaa aaaaaaaaaa aaaaaaa                    4427
//
ID   Jockey-3_DAn repbase;    DNA;    INV; 7676 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7676
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 384-384 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Partial sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           73..2577
FT                 /product="Jockey-3_DAn_1p"
FT                 /translation="MEDTRTEIQKEMDNFNLDNIEPFTSLDSFEMAMICRP
FT                 YGGESTEKIELSSPYSGRHPGSSLQSSDDSCVIVCDANLRTPPADPSSKAK
FT                 SPPKINTNKISHTHTHTQPDPLSLYDPSSKEKSPPKINANTHTHTQPDPLS
FT                 LYDPSSKAKSPPNAIDKSNKTTVPISTHPHTLTQTQPHTHTAPLSSPLPMG
FT                 TEIGAKQCTQAHSQTHTHYTPLSSSLTTGPEIGANIEIQATKTLASALPKK
FT                 TTSPTADREPPVGSNTAINKNNKRLLSSSPTTLTNDIKRANREFEHVAPKL
FT                 DQLAHPNNNTTKNNKSPIKILSDELLRNFFSQLKDSDANPPPPNAPKTTYS
FT                 QILQQEPEYSSPTRPAKLATMNQSSKPAPKKPTPLRASESSSADMGPVVFN
FT                 VKATVHTTPNHNPQGPALMDVSSPFHYKPEKTPVFKSLYAQRLYMERVEAR
FT                 AEANRVKGNGAREGAQINGNSSNKNNNIKTPTAMAPPIVPLRKPPVPLMSL
FT                 SLPFRPPTNALALAQCHRCQKHGHKKGSCRRAFVCMKCAGQHPTTACKKPR
FT                 HVPPRCCNCGGRHISAYKGCRVFQEVKRRAAQDTLRPVAPPERQRSHRPLK
FT                 KDVGPSQNRNEPSNNNYWTILQNDEMTPTPHHPIKQRPNKDPRHHSTRQLQ
FT                 KSPHHRSRMAQTNPDRRLNQQRQHPTEQRSNYNPFRQQRRPNPAEAHLARF
FT                 QERLQLEQEGKERSQRLRGQGWPTPQESLIQKRTGAALKNSRQSSVKSQLH
FT                 WHKLLEKLAFTHEAAQSKLLEKVASIEKKINKLSTLFIKITNMFDITEASP
FT                 DNDFLANLSCSIQTIEMASILNNSLDANDCPYA"
FT   CDS           2561..5815
FT                 /product="Jockey-3_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTVPMPKAPKSLKIVSWNAGGIHNKIDELSAFLRGRD
FT                 VDVLLVSEIRTWTIDIPGYKAYTALNPVSQRRGGAATIIRSDLAHSVLVPR
FT                 NEEAVQICPIAVQNVILASIYCPPSVKWQNDDFPRLLKGIDQLCNPQSLRF
FT                 IIAGDWNAKNQMWGNARSCNRGKLLAEAVQAKNRYNILATGEATCYPFNKK
FT                 ANPSAIDFAVYSGFLPTHISISSVSELSSDHVPLIINAALGKTPLISPDVE
FT                 QAAPRPPPLPRGSHRIKAFRDHLEKYILLNTEINSGEDIEDCVGILLKNIE
FT                 SAALHATPTANNASRYSTKHPSRHTTKLDKPASILLQLLQACFSKMKEDPS
FT                 PENKAKFSRVRNKFKKAIKRLKQAQVNRMLLNLDPEDRYNMAKIWKITRHI
FT                 KSQPQSDHPLKIPVQSRSSGHSPASSDHIWTRSSKEKADAFVKHLEDRFSP
FT                 KMTTLEQERIAIINDLNDFYAHSPSPPSAPIFFRLEELQTQIAALATAKSP
FT                 GEDQIQNALIKLLPKKAVLYLLHIYNSVLRLGHFPHQWKLAVITMIHKTGK
FT                 PNHCPDSYRPISLLSGFGKLFERLLLSKLFKCKNFAEAIPEHQFGFRPEHS
FT                 SEQQVLRVTQHILRAFEEKEHCSAIFLDFSQAFDRVWHEGLLQKLSKIVPK
FT                 QLHKVLTSYLQNRTFKVKGTGGIRSRLGSISAGVPQGSILGPILYSIYTSD
FT                 MPLPDAVPIISRNCTLTPTKLLLATYADDTAVLMSHKQPKEHAKHLQAYLN
FT                 VISEWANKWRMTFNVKKCAHVSFFSGQNMTQTNQTKLLLNGQIIPQANKYK
FT                 YLGVTLDRKINMSLHISLLCIRLRARAKSLEWLIGPHSPLPKPTKATLIKQ
FT                 LIIPIWQHAIPVWASLASDSAVMKVQSATNAIIRRSLEAGRHTTNKVLAST
FT                 FNIKTLEEIYGAQSARLANALLMHINPAAQHLGLNPVTPVSTKKQRPRLSK
FT                 QVLDHYNDNGNGQNTRVPPKSCTIPTLLRLEIKKENEGSNSDVSRTKYVHP
FT                 NLSSKGIDRLGERAINWTRRSFIHGEITRERAARMVRGQPLSIRRLVLPDE
FT                 IILTGEKYFPPPVIDLLNSEGSSSEPHD"
XX
SQ   Sequence 7676 BP; 2349 A; 2175 C; 1496 G; 1655 T; 1 other;
     aaaaaaaaca cattaaaaaa aaaaaacaag ttgaagtgac ttattaatta aaaggagact        60
     taaaaaggag atatggagga cacaaggaca gaaatacaaa aggagatgga caatttcaac       120
     ctggacaaca tcgagccatt tacttcgttg gactcctttg agatggccat gatctgcagg       180
     ccttatggtg gtgagtccac tgagaaaatt gaactttctt ccccctattc ggggcgtcac       240
     ccaggatcct cattgcaatc atcagatgat tcctgcgtga ttgtgtgtga cgccaattta       300
     aggactcccc ccgctgaccc ctcttcaaaa gcgaagagcc cgccaaaaat aaatacaaat       360
     aaaatatccc atacacacac acacacacag ccagatccac tttccctcta tgacccctct       420
     tccaaggaga agagcccgcc aaaaataaat gcaaatacac acacacacac acagccagat       480
     ccactttccc tctatgaccc ctcttccaag gcgaagagcc cgccaaatgc aatagataag       540
     agtaataaga caacagttcc aataagcaca cacccccata cactcacaca aacacagcca       600
     cacacacata ctgcaccact ttcttctccc ttgcctatgg ggactgaaat tggcgcgaag       660
     caatgcaccc aagcacactc acagacacac acacactata ccccactttc ctcttccctg       720
     actacgggtc ctgaaattgg cgcgaacatt gaaatacaag caaccaagac cttagcttcc       780
     gccttgccca aaaaaacaac aagccctaca gctgatcgtg agccacctgt tggttcaaac       840
     acagccataa acaaaaacaa taaacggctg ttgtcttcct ctccaactac gctaaccaac       900
     gacatcaaga gagccaaccg ggagtttgaa catgttgcgc ccaagttgga ccagctggcc       960
     catccaaaca acaacacaac aaaaaacaac aaatcgccta ttaaaatttt atctgatgag      1020
     ttgttgagaa actttttctc acaacttaaa gatagcgatg caaacccccc tccccccaat      1080
     gcccccaaaa ccacatacag ccagattttg cagcaggagc ccgaatattc atcccccacc      1140
     agacccgcca aactcgccac aatgaatcaa tcaagtaaac cagcccctaa aaaaccaact      1200
     ccgcttagag ccagcgagtc cagctcggca gacatgggcc ccgtggtttt taatgttaaa      1260
     gctacggtcc acaccacgcc caatcataat cctcagggtc ctgcactgat ggatgtttcc      1320
     tcccccttcc attacaagcc agaaaagact cctgtcttca agagtcttta tgcccaacgg      1380
     ctctacatgg aacgggtgga agcaagagct gaggccaata gggtaaaggg aaacggggcc      1440
     agggaagggg cccaaattaa tggaaacagc agcaataaaa acaacaacat taaaactcct      1500
     acagcgatgg cccctcccat tgtccccctt cgtaagcccc cggtcccgct aatgtccttg      1560
     tccttgccct tccgtccgcc tacgaatgcc cttgcattgg cccaatgcca ccgttgccaa      1620
     aaacatgggc acaaaaaggg ctcatgcaga cgagccttcg tctgcatgaa gtgtgcaggg      1680
     cagcacccca ccacagcctg caaaaagccc agacatgtac cccctcgatg ctgcaactgt      1740
     gggggtcggc acataagtgc ctataagggt tgtagggtct tccaggaggt gaagagaaga      1800
     gcggcccagg ataccctccg cccggttgct ccgcctgagc gtcagcggag tcaccgccca      1860
     ctaaagaagg acgtgggtcc ctcccagaac cgaaacgagc cgagcaacaa caactactgg      1920
     actatccttc aaaatgacga aatgactcct accccccacc atccaattaa acaacggccc      1980
     aacaaggacc cgcgccacca ctcgacaagg caactgcaaa aatcccccca tcacaggtca      2040
     aggatggccc aaacaaatcc ggaccgaagg ctaaaccagc aacggcaaca tccaacggaa      2100
     cagcgcagca actacaaccc atttaggcaa cagaggcgac caaatccggc agaggcgcat      2160
     ctggctcgct ttcaggagag gctccaactg gagcaagagg gaaaggagcg ctcccaacgg      2220
     cttcgagggc agggatggcc aactcctcag gagagtttga tccaaaaacg gactggcgca      2280
     gctctcaaaa actcgcgcca atccagtgta aaatcccagc tgcactggca caagctgctg      2340
     gagaaactgg cattcaccca cgaggctgcc cagtccaagc tgctggaaaa agtggcttct      2400
     atcgagaaaa aaataaataa attgtcaaca ctgtttatta aaattacaaa tatgtttgac      2460
     ataacagagg cctcaccgga caatgacttt ctagccaact tatcctgctc tatccagaca      2520
     atcgaaatgg cttcgatttt aaataacagc ctagacgcca atgactgtcc ctatgcctaa      2580
     agctcccaag agcttaaaga ttgtctcctg gaacgctggg ggcatccata acaaaattga      2640
     cgagctctca gcgttcttaa ggggacgtga tgttgacgtc ctgctcgtca gcgaaattag      2700
     gacatggacc attgatatcc ctggatacaa ggcttacact gccctaaatc cggtgtcgca      2760
     gcgcagaggg ggtgctgcga caataattcg tagcgacctt gcccattcgg tccttgtacc      2820
     tagaaatgaa gaagcggtac aaatctgccc tattgccgta caaaatgtca tacttgcctc      2880
     catctattgc ccaccatctg tgaaatggca aaacgacgat tttcctcgcc tcctcaaagg      2940
     gatagaccaa ctatgtaatc cacaatcact gaggttcatc attgcggggg actggaatgc      3000
     aaaaaaccag atgtggggaa acgctcgtag ctgcaacaga gggaaattgt tagcggaagc      3060
     agtccaagca aaaaacagat ataacatact tgctacagga gaggccactt gttatccctt      3120
     taacaaaaag gcaaatccct cggcaataga ttttgccgtg tattcgggtt tcctccctac      3180
     ccacatctcc atctcatcgg tatccgaatt atcctctgac catgtcccac tcatcatcaa      3240
     tgcggcactg ggcaaaactc ctttaatcag tccagatgtc gaacaggctg cgccaagacc      3300
     tcctcccctc ccacgaggat ctcacagaat caaagcattc agggaccatc tggaaaaata      3360
     cattctttta aatactgaaa taaacagtgg ggaggatatt gaagactgcg ttggcatctt      3420
     acttaaaaac attgagagcg ctgctttaca cgccactccc accgcaaaca acgcctcccg      3480
     atattcgacc aaacatcctt ctcgtcacac gactaagctt gataaaccag ccagcatcct      3540
     tcttcagcta ttgcaagcat gtttctccaa aatgaaagag gatccctcac ctgaaaataa      3600
     agcaaagttt tccagagtaa gaaacaagtt taaaaaagca attaaaagac taaaacaagc      3660
     ccaggtaaac cgcatgctcc tcaatcttga ccctgaagat agatacaaca tggccaagat      3720
     ttggaaaatt accaggcaca tcaaaagtca accccaatct gaccatcctc tcaagatccc      3780
     agtacagtcc aggtcctctg gacactcgcc agcttcctcc gaccacatat ggacccgttc      3840
     ctctaaagaa aaggcggacg ccttcgtcaa acacctggag gataggttct cccccaaaat      3900
     gaccactctg gaacaggaaa gaattgctat aataaatgat cttaatgatt tctatgcaca      3960
     ctcaccttct cccccctcgg ccccgatttt cttcaggctg gaggagctcc aaacacagat      4020
     tgctgctctg gcgaccgcga agagccctgg ggaagaccaa atccaaaacg cccttatcaa      4080
     attactacca aagaaggcag tcctctacct attgcatatt tacaactctg ttctaagact      4140
     cggccatttc ccccatcaat ggaaactagc tgtcatcacc atgatccata agacggggaa      4200
     gccaaatcat tgcccggact cctacaggcc cataagtctc ctctccggct ttggaaagct      4260
     gtttgagcgc ctccttctct ccaagctttt caagtgtaag aactttgcgg aagccatacc      4320
     agaacaccag tttggctttc gcccagaaca cagttcggaa cagcaagtgt tgagggtcac      4380
     gcaacacatc ctgagagcat ttgaagaaaa ggaacactgc tcggccatct ttttggactt      4440
     ctcgcaggct ttcgataggg tttggcatga gggactttta caaaaacttt ccaagattgt      4500
     ccctaaacaa ctacacaaag tcctcaccag ctacctccaa aacaggactt tcaaggtgaa      4560
     aggaactggt ggaatcagat ccaggcttgg ttccatcagt gctggagtgc cccaagggag      4620
     catcctcggc ccaatcctat actcgatcta cacctctgac atgccactcc cagatgcagt      4680
     tcccattatc tccaggaact gtactcttac cccgaccaag ctccttctag ccacatatgc      4740
     agacgataca gcggtactta tgtcacacaa acagccaaag gaacacgcaa agcatctgca      4800
     agcatacctc aacgtcatct ccgaatgggc aaacaaatgg cgcatgacct tcaatgttaa      4860
     aaaatgcgcc cacgtctcct tcttttctgg acaaaatatg acccaaacca accagacgaa      4920
     actcctcctc aatggacaga tcatacctca ggctaacaaa tacaaatacc ttggggtcac      4980
     attggatagg aaaataaata tgagccttca catttccctc ctttgcataa ggctgagggc      5040
     tagggcaaag agtcttgagt ggctaattgg tccgcacagc cccctaccca aacccaccaa      5100
     ggctacgctg attaagcagc ttattatccc catctggcaa catgccatcc cggtctgggc      5160
     atcgctggcc tcagattcgg cagtgatgaa ggtccaatct gccacaaacg ccattataag      5220
     acgatcactg gaagcgggta ggcacaccac taataaggtc ctagccagca ccttcaacat      5280
     taaaacactt gaggagattt atggagcaca aagtgctaga ctcgctaacg ccctattaat      5340
     gcatataaat ccggcagcgc aacaccttgg ccttaaccca gttacccccg tcagcacaaa      5400
     aaaacaaaga cccagactat ccaaacaagt cctggatcat tacaatgaca atggcaacgg      5460
     acaaaacacg cgagtcccac cgaaatcctg cactatcccg actctcctta ggcttgagat      5520
     aaagaaggag aacgaaggct ccaacagtga tgtatccagg accaaatacg tgcacccaaa      5580
     cctttccagc aaagggattg accgcctagg tgagagggct ataaactgga ctaggagatc      5640
     tttcatacat ggggaaatta cccgcgaaag ggctgctagg atggtacgag gccaacccct      5700
     atctatcagg cgacttgtcc taccagacga aataatccta acaggggaaa aatacttccc      5760
     accacctgtc atcgacctgc taaacagcga aggatcctcc tccgaacccc atgactgatc      5820
     acaatttttc tccctgggga cctaacgcta gcccctccgg gactgcctct ccaaaacaca      5880
     aaccgatgca gcttaacccg tgactactca ctggctcctc cgtagaaact cctcccatat      5940
     tccagcatcg gcgatgattg tatggtgtgt gtgtgtgggt gtgtgggtgt gttccaacgc      6000
     tgcctcaaat ctcccggcaa cgatgcattt taatagaggg ggcgatcaaa attgtcagac      6060
     acagaaacaa gatcgcacag ccactgctcc tgcttgagga atatatatta caaatttgtc      6120
     tgactgccag tctcaggaca tcatactcac ctgtgccttc tctcctctgg ctacaaaatg      6180
     ggatatttct ggaacaggcc acccacagtt cgctcggcca tccactacca aacttgacga      6240
     tgttccatgt cctagagcgt cggcaacctg aaacgagaaa agaagataca aaaatcttac      6300
     aaggggttct acatcaaagt gctattggaa ctcatcttat tatatctcct ccttcaaagc      6360
     tcctgtccaa tgatgacctt cctcctgctt ctcttgctcc aaatgatcct aaccacgagc      6420
     gcccattctt gctggacatt gttcctggaa agaaaagaga aaaataaaat taatcctgac      6480
     gccgctaaaa ccaaacaaaa tttagcctac ttaccttttc tttgaccctt cacgaacgtg      6540
     caaaacctgg aggaataaag ggcaaattga aataagaccc tggatcatgg gaaaacacat      6600
     atatatattt acctggaaat tgccatccca cgctgccgac accgaggaac tgaaatgatg      6660
     gaaaattgaa attaatacgc tccaaatatc ccccctgaag ggaattgatg cctgagaagc      6720
     tattgcactt ccaaaggatg gcacctgctc caggatcatc tgcktacctg tctgctcaat      6780
     gtcgtcccaa attgctgtct tttaatcttg tcttgaagtc ctcattgttt acatgttttc      6840
     aatgtttaca taatcatccg tcttcttctt aatactgcat tccatgtttt tgatccaaaa      6900
     atttcctatt aacgacgctg actgccgact taccaactat ctgtgatact cacctgtgat      6960
     aacccttatc cacttgacga cctccactgg attcacctgc aaacgtacct gattagctta      7020
     aggaaaaaca ccgacaattg gaagactaat aagaagaaga aaccataaca aaacttaccc      7080
     tcaaagacga cacgacccga tgcaccagaa agacgacgcc cttgaacacg ccaaccggca      7140
     aaatcccctg tcccacaatg ccgtccctca atgtgttgtc ctaaatgtct ccctgaaatg      7200
     caaaaactca caaactctta aattttcttc ctatatttac ccatttctgc gatgagtgct      7260
     gccaacctgc ccggcctggt ggtcggagtt gccacctggg gcaaagcacc agaaacgaga      7320
     gctgccaact ggtcccgcct ggcatatgga gttgccacct agcgccaaga cgaccatggg      7380
     acgaatgcga cccgacgacc ccagaaacaa caacaggaga aagtgctctc tccaggagcc      7440
     cgccaatttc atggaaagtc tcccggaaca aaagttgccc tctgggtaat actccgggag      7500
     acttttctct tcccagcatt ctcacaacca tttgggccct ggagcagcga ggactggtct      7560
     taaaccagcc cgccaaatct ttgaaatttg aatttgaatt tgtttaaagt gtaaaacgcc      7620
     aagtaaaagt tatttgtaaa attcatacaa ttcctttaaa agaaaacaaa taaaaa          7676
//
ID   Jockey-3_DBp repbase;    DNA;    INV; 4204 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4204
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 711-711 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1374..4073
FT                 /product="Jockey-3_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MHTQLDITIWNANGLVKRRPEVELYCKTHQADVLLIS
FT                 ETHFTNRSYLTIRGYDLIAANHPNGRGRGGAAILIRSCIKYEALPAMCEDW
FT                 VQCAQIKISTTNGDITIAAAYCPPRHNIHEQEFGLLLDCLGPKFIIGGDFN
FT                 AKHPWWGSRITNPKGSALYRQIQSRILSCHATGAPTYWPTDPHKIPDVLDF
FT                 AISGGLDSAGIQAREVEDLFSDHSAFAVSLFTPALLRSARKKLIYKTTDVD
FT                 KYQSYLNNVTDPSPTLDSPVDIDTVVEELTAHIQAAASEAAPRPSNRPRAT
FT                 DRDIHFWSPEVEELKLEKRRLRRVWMLSRNPLDKTAFNRATKCLTETLARL
FT                 RKQAFDGFVEQLEPGDPQHNLWRVTKSIRQPLKRIPPVQRTDGSWCRSEMD
FT                 RANAFAEHLEGVFTPFDRCSPEDAAETARLLAEPSRDADPIPPVTEEETAE
FT                 LITIMSNNKAPGDDGINAIALKMLPPPSIQLITRIYNRCLEIGYFPSTWKR
FT                 AQVTMIPKPGKPEANLSSYRPISLLPMLSKILERVFLSRALPVFDEAGLIP
FT                 DHQFGFRRRHGTPEQCHRVVQCILDAFETKKYCMAVMLDVKQAFDRVWHPG
FT                 LLYKLKTGLPRPYFQFLKSFLEDRKFAVRCGEAISGIREAHAGVPQGSVLG
FT                 PLMYNAYTADLPVLQRPDLLAATYADDTAFLTTADSALGAADTMQLQLDLL
FT                 SDWQKRWNIAVNNEKSTASTFSLCKGNCPPVNLNGSPIPQVDNPRYLGFTL
FT                 DRRLTWKPHLIKKRKQANQRLRSFYWLMGRRSKLRTSTKLLIYKAIIRPIW
FT                 TYGIQLWGTASKTNVRTMQAFENRALRIATGAHVYHDNRTIHEVLNFPWVK
FT                 DEIQRSSARYMQRLHNHPNRLASSLLDNSEQPRRLKRTHPLDLPLLL"
XX
SQ   Sequence 4204 BP; 1245 A; 1153 C; 919 G; 877 T; 10 other;
     ggtaggcttt gaacckaaag catcgtttta ttgtttgtta aaaaaaaaag aaaattaaaa        60
     ttttttttaa acaccaaaca aatataaaac cactcttatt tacwtaatct tgsggccatt       120
     ctcgggcaaa accaactcaa tgggctggca agaccctccc agttccatca aagtcaagcc       180
     gccttcgaaa aagaaagcct attccaattt tcaagatgac gattccagcg actccgagca       240
     tggagaaatg aagcggaagt ctgctawaaa acccattatg gaagacgaac ctaccwccag       300
     cgaagcagcc asagctgcac ttaaagctaa tattgaaaaa attattatgc aattctgtct       360
     gatktagacg atgaagatcg tgtcagmgac atggaggttg acgktatgaa gaaaaagatg       420
     acaagaagac caagcaatct gcggtaaaaa cggcgaaaat catcaaaccg cccccaattt       480
     ttatcccgga cgtatccagc atcaagggcc tttccaaaga catttcccac ctcttaggcg       540
     gggatgtcga agtgacctac aaggcaagca ctaacaacac aattcgcgtc atgactccag       600
     acaaggatac ttactcaact ctgaaaaagt tcctgagcga aaataaccat cgataccaca       660
     cattccagcc ccgagacgag cgcgcttatc ggatcgtcgt taaaggcctc cacttctcca       720
     ccgacccgga ggatattaag gtgggtttca gcagccatgg acacaaagtc agggatatac       780
     acaatcctac gcaaaaaggt acaaagaagc cactaaacat tttctttatt aacctcgagc       840
     cagccaaaaa caacaaggag gcctttcaag tcaacggcta gcagcggtgg ttacgttgag       900
     ccaccaaaaa aattcgacga tgtgccccaa tgccatcgct gccagggctt cggtcacacg       960
     aaacggtact gccatctgga gtacagatgc gtaaagtgtg gagataggca cccatcgtcc      1020
     gaatgcacca aaatcgccag tgaaccagcc gtctgcctcc actgcgacgg atcacacgcg      1080
     gcctcttaca agggctgtcc agcctacaaa aaggcaaaga gcacgttcgc ccccaagcag      1140
     actgccccaa gacgccagca acctcaattc agcaaaatta accctaacat cagctatgct      1200
     agcgcagtca aaaacggagc accacagttt gactccaacc ccaatcccga tcccagtctt      1260
     ccaagtaatc caatggacgc cctaatggct aggatggaat ctatgtttga gcgcatgatg      1320
     gagaaggtct tgagccaaat agcccaaatg atggccaccg tttgcaaatc cttatgcata      1380
     cgcaattaga tataaccata tggaatgcta acggcctggt aaaaagaagg ccagaggtcg      1440
     agctatattg caagacccac caagcagacg ttctcctcat atcagaaacg cattttacca      1500
     acagatcata cttgactatt agaggatacg acctcattgc cgctaaccac ccgaacggta      1560
     gaggtcgcgg gggcgcggcc atccttattc gcagctgcat caagtatgag gcacttccag      1620
     ccatgtgcga agactgggtg caatgtgccc aaattaaaat ctccactacc aacggtgaca      1680
     taacaatcgc cgcagcatat tgccccccca ggcacaacat ccacgaacag gaattcggct      1740
     tgctactgga ttgcctcggc cccaagttca taatcggagg ggactttaat gctaaacacc      1800
     cctggtgggg ctccaggatt acgaacccaa agggctcggc cctatacagg cagattcagt      1860
     cccgaatctt gagctgtcac gcaaccggtg cacccacata ctggcctacg gatccccaca      1920
     aaatccctga tgtcctagac ttcgccatct ccggaggact ggattctgcc ggaattcaag      1980
     cgagagaagt agaagacctc ttctcggacc acagcgcctt tgccgtgtca cttttcaccc      2040
     cagccttgct caggtcagcc cgcaaaaagc tgatctacaa gacaacagac gttgacaagt      2100
     accaatctta cctgaacaac gttaccgacc ccagcccgac acttgactcc ccggttgaca      2160
     tcgacaccgt tgtagaagag ttaacagccc atattcaggc ggcagcttct gaagcagcac      2220
     caaggccctc caaccgccca agagccactg acagggacat ccatttttgg agcccagaag      2280
     tcgaagaact caaacttgaa aagcgacgac tccgaagagt gtggatgctc tcgaggaatc      2340
     ctttggacaa aaccgccttc aatagagcga ccaaatgtct gacagaaact ctggcaagac      2400
     taaggaagca ggcctttgac gggttcgtcg aacaacttga gccaggcgac cctcaacata      2460
     acttatggcg agtcaccaaa tctatcagac agccgctgaa aaggatccca cctgtacaaa      2520
     gaaccgacgg cagctggtgc agatcggaga tggacagggc caacgctttc gccgaacacc      2580
     tcgaaggtgt ctttacgcct ttcgatcgct gctcaccgga ggatgctgct gaaactgccc      2640
     gtctgctagc cgagccttcc agggacgccg atccaatacc accagtgact gaggaggaaa      2700
     cagctgagct cataaccatc atgagcaaca acaaggcccc gggcgatgat ggtatcaatg      2760
     caattgcatt aaaaatgtta ccacctccaa gcattcagct aattacgagg atctataata      2820
     gatgcttgga gatagggtac ttcccgtcca catggaaacg tgcccaggta actatgatac      2880
     ctaagcccgg gaaacccgaa gcaaaccttt cgtcctaccg accaataagt ttgttaccaa      2940
     tgctctccaa aatacttgaa cgagtgtttt taagcagagc actgccagta tttgacgagg      3000
     ctggactgat ccctgaccac cagtttggct tcaggcggcg acacggtacg ccagagcagt      3060
     gccatcgggt agtgcagtgc atcctggacg cgtttgaaac caagaagtac tgcatggccg      3120
     tcatgctgga cgtgaagcag gcgtttgacc gagtctggca tcccggtctt ctatataaat      3180
     taaagactgg cctaccccga ccatacttcc agttcctaaa gtcgttcttg gaagaccgta      3240
     aatttgctgt tagatgtggc gaggccatct ccggtatwag agaagctcac gctggtgtac      3300
     cccaaggcag cgttcttggc ccgttgatgt acaatgctta cacggccgac ctccctgttc      3360
     ttcagaggcc tgacctgctc gcagcaacct atgcagacga caccgccttc cttaccaccg      3420
     ccgatagcgc attgggggca gccgatacga tgcaattgca gcttgacttg ctcagcgact      3480
     ggcaaaagcg atggaacatt gccgtcaata atgagaagtc cactgcctcc acattttctc      3540
     tctgcaaagg caactgccct ccagttaacc ttaacggctc tccaatccca caggtagaca      3600
     atcccaggta cctgggattc accctagaca ggaggctcac ctggaagccc catctgatta      3660
     agaagaggaa acaggctaat caaagacttc gatccttcta ctggcttatg ggtaggagat      3720
     cgaagctgag aacttccact aaactcctca tttacaaggc aataatacgc ccaatctgga      3780
     cgtacggcat acagctctgg ggcactgcga gcaagacgaa tgtccgaact atgcaagctt      3840
     tcgaaaatag agcccttcga atcgccactg gggcccacgt ctatcatgac aatcgcacca      3900
     tccacgaggt tctcaatttc ccttgggtca aggacgagat acaaagaagc agcgcacgtt      3960
     acatgcagag gcttcataat cacccgaacc ggttggccag ctccctgctg gacaacagcg      4020
     agcagcccag aagactaaaa aggacacacc cgctggacct ccccttacta ctctaattta      4080
     tttctaccat attaatattt aaaattatct ataagtgaag tttacgtgat aacatttaat      4140
     ggttgtccct aatggacagt tttaaataaa cgttaccctg ctattacaaa aaaaaaaaaa      4200
     aaaa                                                                   4204
//
ID   Jockey-3_DEl repbase;    DNA;    INV; 4637 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4637
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 556-556 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(58..261,207..587,553..1788)
FT                 /product="Jockey-3_DEl_1p"
FT                 /translation="MSDADIMSGKDVFQFQAISGNTCCKSNIDPRVSKHLE
FT                 FAKDQIIRPPVNKDEAAKKVVNQSSMTSRTIRRSCQKSRQPILDDISDNLT
FT                 YEDQDCDDPFEPASCSSSSLNVTNNESFPAMNPFTPNWISKNAADKERLTQ
FT                 VNNLRKRRNLDVSGGSKTSLKKPVSNQKRPQVAASATNSQQSPLNEGESTY
FT                 SEEEQMKESLLTQRKNNSFAILSDDEDDTMTIDPITEPELGHGLSEPVQLN
FT                 FPAVSPSNASSHTKTKKRDPRPPPFLLRGVTDFRKLIALLSSVTTGFRLKM
FT                 TGRSSCRITVDDGSVYRVVQKLFKDNGIPVSTFQFKNERAFRVVIKGLHAA
FT                 TEIAEITARLKALGHNPRSVYNPPGENGKANRDIFFVELEPARNNKEVYDI
FT                 RTVDYQVVKVEPQLQRKGPLRCFRCQEFGHSKNFCSLLPKCARCAGDHETK
FT                 DKDKCLATKEEQFKCINCGSNHSASSRRCPAYLEAIEKRRPNTSVDRSPIQ
FT                 KLVLKPALPPAHNAWFTSRPSVSSSQPLPVRDSRQNVLPPLSQPNLETTQQ
FT                 PAQDRLLEFIDXLRKQQENAAMAQAAAIDKLLVRFDQMMSMMTATLEMLQS
FT                 VMLSTHCDD"
FT   CDS           join(1784..2146,2070..3857,3821..4495)
FT                 /product="Jockey-3_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MTNYGLNIVIWNANGLVGKSLEVEHLLQERDIDILLI
FT                 SETHFTSRSFFRIYGYAVYSANHPDDRHRGGAAVIVKSSLDYHLSATISEP
FT                 HLQAVAINLVTGLAEFRSVLSTVLWSPSFLVSSIWSLGWQNFVRCCLLSSG
FT                 HHHSWSAHEYLRLFGSVGNRFLIGGDWNAHHSFWGCRRSCTRGMSVVSNSS
FT                 MQILATGGPTHFPWINNHLPTAIDFAVYRGIPCSHLAISECPGLSSDHIPL
FT                 LIYLCVAAYTVVTKTRLLPRGSDMRSFGARLSALTQEHPSLTTVDEVDSFA
FT                 EFLVDQIHQAAPPARSVPIPPPSWSASKPEIAALARKGHALRRVWMRTRHT
FT                 IDMARWKAAVSELKKVLRLAKSEFFMDKLSAIDPNQNHGFALWKCTRNLKR
FT                 QPLQRFSLKRNDGTWAHSDSEIAEVFADDLENRFTPFDFATSQEVQTTISR
FT                 LGLSFGPPVDVRPVDEGEVRDHIRRLVSTKAPGMDAIDGKVAKALPSSVIT
FT                 QLCQLFNASLDLGHFPAPWKRALVTMVPKKGKDPCSPDSYRPISLLSTFSK
FT                 IFERIMLARLLAIAAFDEALPDHQFGFRSRHCAVEQVHRVVNHVLGALEDR
FT                 KYCSAVFLDVRQAFDRVWHEGLLYKLMPLLPEGLWKLIVSFLDKREFAVDI
FT                 RGHRSGLRPIRAGVPQGSVLGPVLYTVYTSDLPNPVARGTLLATYADDTAF
FT                 LAVGSTPRLPPGVSRHSYPTSASRRVQTFLNEFECWASRWNIALNVDKTQH
FT                 ATFALRPGRSRSLYLDGNRLKHEDKVTYLGVTLDRRLCWKGQIDRVCGSAR
FT                 SKLDRMDWLLRPGSGLTLQAKLRLFKAIVLPTLNWGITCWGTACDSSLKRV
FT                 QTCISKALRRILGVKWHHYVENRVLFQDTGVPTVTETICSFSNRYRDRLLD
FT                 HTNRLARRLATPLGRRRLRRRHPADLWIIGRDRHGRLL"
XX
SQ   Sequence 4637 BP; 1164 A; 1132 C; 1079 G; 1261 T; 1 other;
     ggcaggccgg ctgctgcgct taacctttat ttttattttt attttattac ccgtgcaatg        60
     tcagatgctg atatcatgtc cggcaaagat gtctttcaat ttcaagccat ctctggaaat       120
     acctgttgta aaagcaatat tgacccccgt gtgagtaagc acttggagtt tgccaaggac       180
     caaatcatca gaccaccggt caataaagac gaagctgcca aaaaagtcgt caaccaatcc       240
     tcgatgacat ctcggacaat ttaacctatg aagatcaaga ctgtgatgat ccttttgaac       300
     ctgccagctg ctcatcgtca tctttgaatg tgacaaacaa tgaatctttt ccggctatga       360
     acccttttac tcccaattgg attagtaaga atgctgctga taaagagcgt ctgacccagg       420
     taaataacct caggaaaaga agaaatctgg acgtaagcgg tggaagtaag acttcgctaa       480
     aaaagcctgt tagcaatcaa aaacgtcctc aagtagccgc ctctgctacg aattctcaac       540
     agtctccttt aaatgaagga gagtctactt actcagagga agaacaatag ctttgctatt       600
     ctgtctgatg atgaagatga tacaatgact attgatccta tcaccgagcc tgagcttggc       660
     catggtttat ccgagcctgt ccaacttaac tttcctgcgg tatcaccaag caatgcctct       720
     tctcatacta aaactaaaaa acgcgatccc cgtccccctc cctttctgct gaggggtgtc       780
     actgattttc gaaaactaat tgctttactt tcatctgtga ctacaggttt tcgcctcaag       840
     atgactggtc gatcttcctg tagaattact gtggatgacg gaagtgtata ccgtgtggtc       900
     cagaagctgt ttaaggataa tggaatccct gtcagcacct ttcaatttaa gaacgaaagg       960
     gcctttcgag tcgtcatcaa gggtctccat gcggctactg agatagctga aattactgcg      1020
     aggcttaaag ccttggggca caatcctcgc agtgtataca acccccctgg tgagaatggc      1080
     aaggcgaacc gggatatatt ctttgttgaa ttggaaccag cgagaaacaa caaagaagtt      1140
     tatgatattc gcacagtaga ttaccaggtg gtgaaagtag aaccgcagct ccagagaaaa      1200
     ggacctttaa ggtgtttccg atgtcaagaa tttgggcatt ctaaaaattt ttgctcactt      1260
     ttgccaaagt gtgccagatg tgctggtgac catgagacga aggacaagga taagtgtctg      1320
     gccacgaaag aagagcagtt taaatgcatt aactgtggct ctaatcatag tgcttcctcc      1380
     cgccgatgtc ctgcctattt agaggctatt gagaaacgta ggcctaatac ctctgtggat      1440
     cgcagcccga ttcaaaagct tgtccttaaa cctgctttgc ccccggctca taatgcttgg      1500
     tttacctcgc gaccttctgt atcctcaagt cagcccttgc cagtgcgtga ttcgcgccaa      1560
     aatgtattgc ccccgctaag ccagccaaac cttgaaacta ctcaacaacc tgcccaggac      1620
     aggcttctgg aatttattga tawgttaagg aagcagcaag agaatgctgc gatggctcaa      1680
     gcggctgcaa ttgacaaact gttggtacgc tttgatcaaa tgatgtcgat gatgacggcg      1740
     acgttggaaa tgctacagag cgtgatgttg tcgacgcatt gcgatgacta attacgggct      1800
     aaatatcgta atttggaacg ccaacggctt agttggcaaa tctctggagg ttgagcatct      1860
     tctccaggaa cgcgacattg acattctact tatttcggag acacatttta ccagccgttc      1920
     ttttttccgt atttatggat atgctgtata ctccgcaaac caccctgatg atcggcatcg      1980
     tggtggtgct gccgttatcg ttaagtcctc cctcgactat cacctgagcg ccacaatatc      2040
     agagcctcat ttgcaagcag ttgccataaa tttggtcact gggttggcag aatttcgttc      2100
     ggtgctgtct actgtcctct ggtcaccatc attcttggtc agctcatgaa tatctgcgcc      2160
     tgtttggctc tgtgggtaat cgcttcctta ttggagggga ttggaatgcc catcacagtt      2220
     tctggggatg caggcgttcg tgcactcggg gaatgtcggt tgtttctaac tcaagtatgc      2280
     agattctggc cactggcgga cctacgcatt ttccatggat taataaccac cttccgacgg      2340
     ctattgattt tgcggtgtac agaggcatcc cgtgtagcca ccttgctatc tcggagtgtc      2400
     ccggtctttc ctctgaccat attccgcttt tgatatatct ctgcgttgct gcctatacgg      2460
     tcgttaccaa aaccaggctt ctacctcgtg gttcggatat gagaagtttc ggtgcccgac      2520
     tttctgccct gactcaggag catccctctc ttactaccgt ggacgaagtt gattcctttg      2580
     ctgagttctt agttgaccag atccaccaag ctgcccctcc tgctagaagt gttcctattc      2640
     ctccaccatc ttggtctgct tcgaagccag aaattgctgc cttggccaga aaaggtcatg      2700
     cactccgccg cgtctggatg aggacgaggc ataccatcga catggcaagg tggaaggctg      2760
     ctgtgtcaga acttaaaaaa gtccttcgtt tggccaagtc tgaattcttt atggacaagc      2820
     tcagtgccat tgaccctaac cagaatcacg ggtttgcgct gtggaaatgc acccgcaacc      2880
     taaaaagaca gccgcttcag agattctcac ttaaacgtaa cgatggcact tgggcccaca      2940
     gcgattccga gattgctgaa gtatttgcag atgatttgga aaatcgcttc actccatttg      3000
     actttgcaac aagccaagaa gtccaaacaa ctatctctag attaggactc tcttttggcc      3060
     ctcctgttga tgtgcgtcca gtagacgagg gtgaggttcg tgatcatatt aggcgactag      3120
     tttccactaa ggctcctggc atggacgcga ttgacggaaa ggtagcaaag gctctgccta      3180
     gctcagtcat tacgcagctc tgccaactct ttaatgcctc cctagacctt ggtcattttc      3240
     cagccccttg gaaacgtgct ctagtcacaa tggtaccaaa aaaaggaaaa gacccgtgct      3300
     ccccagattc ctatcggccg attagtctcc tatccacttt ttccaagatt tttgagcgga      3360
     tcatgcttgc taggctctta gctatagctg cgtttgatga agcccttcca gaccaccagt      3420
     ttggctttcg tagtcgccat tgtgctgttg agcaagtgca cagagtagta aatcatgtac      3480
     tgggtgcttt ggaagatcgc aaatactgct cagctgtctt tcttgatgtt cgacaggcct      3540
     ttgacagggt ttggcacgaa ggtctccttt acaaactaat gccacttttg cctgagggat      3600
     tatggaagct aatcgtgtca ttcttggata aaagggagtt tgctgtcgac atccgtggac      3660
     atcgttctgg actacgccca attcgtgctg gggtcccgca aggaagcgtc cttgggccgg      3720
     tcctgtatac agtttatacg tcggatcttc caaacccagt tgcacgcggt acactcctgg      3780
     ccacctatgc agatgacact gcatttcttg cagttggtag taccccacgt ctgcctcccg      3840
     gcgtgtccag acattcttaa atgaattcga gtgttgggct tctcggtgga acattgcact      3900
     gaacgtcgac aaaacgcagc acgccacatt tgctctccgc cctggccgtt cgcgtagcct      3960
     ctaccttgat gggaataggc ttaagcatga agacaaggtg acctaccttg gtgtaacatt      4020
     ggaccgtcgc ctttgttgga aaggacaaat tgaccgcgtg tgtggctcag ctagatcaaa      4080
     actggacaga atggactggc ttcttcgacc aggtagcggt ctaacccttc aggctaagtt      4140
     gcgactcttc aaggccattg tcctcccgac gttgaattgg ggaataactt gctggggcac      4200
     agcctgtgat tcatctctta aaagggtaca aacgtgcata tcaaaggcgc tcaggaggat      4260
     actgggtgtg aaatggcacc attatgtcga aaatcgtgtg ttgtttcagg acacgggagt      4320
     gccgacggtt acggagacaa tttgtagctt ttcaaatcga tacagagatc gcttgctgga      4380
     tcacacgaac cgtctggcta gacggcttgc tacaccattg ggtcgacgac gtctccgcag      4440
     acggcaccca gcggacctgt ggattattgg tcgtgataga cacgggcgcc tcttataaca      4500
     acacaagaat actgacaagc ttttacctgc cctgcactta atacccgaat ttttgggatc      4560
     tttgaacact cctacgcata cacgaaagca aggaccatcc ttgtgtggcg tgtaaaataa      4620
     aataattgca aaaaaaa                                                     4637
//
ID   Jockey-3_DEu repbase;    DNA;    INV; 5079 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5079
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 949-949 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           510..2171
FT                 /product="Jockey-3_DEu_1p"
FT                 /translation="MSRLSDSEDELNIRKTVARHQQTMKEALNNFSRIYAS
FT                 TSSAKPLPSFDEREPELSAINGDDEDWWTPRSTNNKRRLESRSPNKVSKVQ
FT                 RNSNSPKTILPANRFSELSDIDTDIEVAGSHRPTRPIETPSTSAGLRQAAN
FT                 KTSSSSSTNNNNSKNPSGCQEQPASHKPPPIVVNHCENLNGLIRSIDKIVD
FT                 PCKYSLKCHPNNSVSILAVDSDAYRAITKSLTAKKVPFHSWQLKEERSYRV
FT                 VIRGIHHSVPDDNIKESLTSAGHTVRFVNRPRSRFDKTQFVNLVFVELEPA
FT                 ANNKEIHEVKTLCRQRVQVELPYKKDDVVQCHRCQAFGHTKNHCQKLHNCV
FT                 RCGLQHGLEACLKDVHPVKCVNCGGNHTASYKGCIVYQQIASRRKISTSRR
FT                 TTTLQQQPTSIPRTNPVFPSSYANAVRGQTSYPTPTQSQQQFPPLGSNSRK
FT                 QSPTLHHNAPPRQERPVPQLQQQQVHPQQSLPQQQRRTTQQSVNDIQWQRQ
FT                 EQMFLQSNERLSVLVAQFDKMFQMMVSMMGLVSKLLPQHPLGGAEAFAGSL
FT                 PVHVTQP"
FT   CDS           2171..4891
FT                 /product="Jockey-3_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLTSKALELELFVQSHDIDIMLV
FT                 SETHFCSRSYYNLHGYDTHQANHPADRKRGGSAIIIKSCLQCYQSYSLQSP
FT                 NIQCVSVKVKTVLGEISIASIYCPPNFQCSAEDFEKLFDDLGTNFIIAGDW
FT                 NAHHRLWGSRSSTPRGRALAELVQGSNFQVLATGGPTHYPYSQNSPTAIDF
FT                 AVYRGIRPESLSITEYFELSSDHIPLIISLRVAALKISRRPQILPRNASVP
FT                 RFQAVINRLVNLNMVLNSPEDIDDAVETFARNIHIAAESSTYGQVSKPSNP
FT                 SQALLKPEIMDLVRLKRSLRRRFMRSQDPVDKRAYRRTEDELKKLLRITKR
FT                 EFFEEMLLNADPSKPYGFNLWKATRKLKRQPLRKIPIKKTDGTWCKSDSEI
FT                 SLAFAEELEQRFQPFNLASSEDVADTRAFLNSPAPDALPIKHISPKEVCLH
FT                 IQKLRSSKAPGFDGIDSRVAKALPKKGVLFLVLIFNSMLRIHHFPSQWKCA
FT                 VITMIPKPGKPENLVGSYRPISLLPTFSKIFERIFLSRIMGVRTIQDAIPD
FT                 HQFGFRKQHGTPEQVHRVVHHILNAFENKQYSSAIFLDVKEAFDRVWHDGL
FT                 LYKLKSLLPTAQFLLLKSYLLGRSFMVEVRGVRSSIRSARAGVPQGSVLGP
FT                 VLYTLFTSDLPCPNEPNTLLATYADDTAFLVNSSCRIEASRITQEFLDTYG
FT                 KWTNRWNIAINGRKSQHCCFAWRVQSLPEVKLHDDIIPQSSQAQYLGLILD
FT                 KRLTWRQHTSKIAATCRSKLRKLYWLLKPTSKLSLANKVLLYKSIVVPSMM
FT                 YCIQLWGLASDSNVMKIQRVQNRALRMIANAPWYVRNKALEDDLHIPSIRE
FT                 QINRHSSRYNDRLTAHTNHLASSLAHTTIRRRLKRRHPADLWTRGRQISRV
FT                 LKQ"
XX
SQ   Sequence 5079 BP; 1501 A; 1250 C; 1054 G; 1274 T; 0 other;
     tctcgatcat gctttcgtgt agtgcagacg cgtttttgca ttgctgcgga tttcattgtg        60
     tagagtctat ggacaagtcc acgtttgtgg caaagcgtaa ttcttttgtg aatttctacg       120
     aattcttggt aaaaagtcaa tggacaagtc cacatctgtg gcaaaataaa tcccccggta       180
     aattgtttca aaaagtcgct gtcagtgctc ccacgacccg ttagttgtgc tcgtcgcgaa       240
     aacaagttga acagttagtc agaacaagtg gaacaataag aagacgaaaa cgaaaacaaa       300
     atcacgatcg atcgatacaa attaaaaaaa agagattaat aaaataaaaa tttaattcac       360
     ccctcggcgg gtctgagcca agtacgtccc ggctgagggg cttgcgcttg ccccctaggc       420
     tacgatcagt gcttgtcgct gttgggatta agcgaccatc taacaatcca gtcggtaaag       480
     cagtgcacgg aagtgcctaa aatcgtacaa tgtctcgcct ttcagactcc gaggatgagc       540
     taaacataag aaagactgta gcacgtcatc agcaaacaat gaaagaagcg ttaaataact       600
     tcagccgaat atatgcttct acctcaagcg ccaagccatt accatcattc gacgaacgtg       660
     aaccggaatt atcagccatt aacggcgacg acgaagactg gtggacccca agatcgacta       720
     acaacaaacg tcgcctcgaa tcaagatcac cgaataaagt cagcaaagtt caaagaaact       780
     cgaatagccc taaaaccatt cttccagcta accgtttttc tgaattatcg gacatcgaca       840
     ctgacattga ggtggcaggt tctcatcgac cgaccagacc tattgaaact cctagtacgt       900
     ctgccggatt aaggcaggct gccaacaaaa cttcttcttc ttcatcaact aacaacaaca       960
     acagcaaaaa tccttctgga tgccaggaac aaccagcctc ccacaagcca ccccctattg      1020
     tggttaatca ttgtgaaaac ctaaatggtc tcataagatc aatagacaaa attgttgacc      1080
     catgcaagta ctcattaaaa tgccatccaa ataactctgt atctatccta gcagtagact      1140
     ctgatgcgta cagagctatt actaaatctt taacagccaa aaaagtgccg ttccattcgt      1200
     ggcaactaaa agaagagaga tcctaccgtg tagttatccg tggtatccat cattctgtac      1260
     ccgatgacaa cattaaggaa agccttacct cagctggaca cacggttcgg tttgtcaaca      1320
     gacctaggag ccgatttgac aaaacacagt ttgtcaactt ggtttttgtc gagctagaac      1380
     cggcggctaa caacaaagaa attcatgagg tcaagactct ttgtcggcaa cgggttcaag      1440
     ttgagctccc ttataagaag gatgatgtcg tgcaatgcca ccggtgtcaa gcatttgggc      1500
     acaccaagaa tcactgccaa aaactccaca actgcgtcag atgtggctta cagcacggcc      1560
     tggaggcgtg cttaaaggat gttcatccgg tcaagtgtgt gaactgtggc ggcaaccata      1620
     cagctagcta taaaggttgt attgtctatc agcagattgc aagtcggcgg aaaattagta      1680
     catcaaggcg taccaccact ctccaacagc aacctacctc cattcctcgg acaaatcctg      1740
     tatttccgag ctcctacgct aacgctgtcc gtggacaaac tagttatccc acacccactc      1800
     agagccaaca acagtttcct ccgctgggca gcaatagcag gaaacaaagt ccgactcttc      1860
     atcacaatgc accacctcga caggagcggc cggtgcccca actacagcag caacaagtac      1920
     acccacagca atctctaccc caacaacagc ggcgcaccac gcagcagtca gtcaatgata      1980
     ttcaatggca acgtcaagag caaatgttct tgcaatcgaa cgaaagactg tcggtccttg      2040
     tagctcagtt tgacaagatg ttccaaatga tggtgtcgat gatgggtctt gtttctaaat      2100
     tgctaccaca acaccctcta ggaggagctg aagccttcgc tggatctctc ccggttcatg      2160
     taacgcaacc atgagtcaaa tcggccttaa cattggtgtg tggaacgccg acggtctcac      2220
     tagcaaagcc cttgagctag agctctttgt tcaaagccat gatattgata ttatgctagt      2280
     tagtgaaaca cacttttgtt caaggtcata ctacaacttg catggttacg atacccatca      2340
     agcgaaccat cctgccgatc ggaaacgcgg tggctctgcc ataattataa aatcctgcct      2400
     tcaatgttac cagtcttata gtttacaaag tccaaatatt caatgtgtct cagttaaagt      2460
     caaaaccgtc cttggtgaaa tatctattgc gtctatttat tgtccgccta actttcaatg      2520
     ctctgccgaa gactttgaaa aactctttga cgatctggga acaaacttca taatcgctgg      2580
     tgattggaat gcccaccatc gactctgggg gtctcgaagt tcaacccccc gcggaagagc      2640
     gctcgcggaa cttgttcaag gatcaaattt ccaggtcctt gcaactggag gacccacaca      2700
     ttatccatac agccagaatt cgccaacagc cattgacttt gcagtctaca gagggatacg      2760
     cccggagagt ctttctatta cagaatattt cgaactgagc tctgatcaca ttccactaat      2820
     aatttcatta agagtcgctg cgttaaaaat tagtcggcgg cctcaaattc ttcctcgtaa      2880
     tgcaagtgtt ccgcggtttc aggcggtaat taacagactt gttaatctca atatggtgct      2940
     caactcccct gaagatatcg acgatgcagt tgaaactttt gctcggaaca ttcatatcgc      3000
     tgcggaatcg tcaacctacg ggcaagtctc caaaccttcc aatccatctc aggcactttt      3060
     aaaacctgag attatggact tggtaaggct gaaaagatca ttgcgccgta gatttatgag      3120
     gtcccaagat ccagtcgaca aaagagcata tcgacgtact gaagacgagc ttaaaaaact      3180
     cctgcgtata accaagcgtg agttctttga ggaaatgctt ctcaatgcgg accccagcaa      3240
     accttacggc ttcaatctct ggaaagctac aaggaaatta aaaaggcagc ctcttaggaa      3300
     gatcccaatt aagaaaacag acggtacatg gtgcaaatca gactcagaga tctcattagc      3360
     ttttgccgaa gaactagagc aacgctttca gccattcaac cttgcgagct cggaggatgt      3420
     cgctgacact cgggcctttc tcaactctcc tgctccggat gcactcccca taaagcacat      3480
     aagtccaaaa gaggtttgcc tccatattca aaagctacgc tccagcaagg cgccaggatt      3540
     tgatggcatt gatagcaggg ttgctaaggc tctccctaaa aagggagtcc tgtttcttgt      3600
     tctcattttc aactcgatgt tacgtatcca ccacttcccg tcccaatgga agtgtgccgt      3660
     gataacgatg attccaaagc caggaaaacc ggagaacctt gttggatcat acaggccgat      3720
     aagcttacta cctacgttct ctaaaatatt cgagagaata ttccttagta gaattatggg      3780
     agtaagaacc atacaggacg ccattcccga ccaccagttt ggttttagga agcaacatgg      3840
     gactcctgag caagtccatc gagttgtgca ccatattctg aatgcctttg aaaacaaaca      3900
     atacagctct gctatcttcc tcgacgttaa ggaagccttt gatcgcgtgt ggcatgatgg      3960
     cctgctgtat aagctgaaat ctcttctccc gactgcccaa ttcctcttac ttaaatcata      4020
     tttacttggt cgaagtttta tggttgaagt aagaggagtg aggtcaagca taagatctgc      4080
     tcgtgctggg gttccacagg ggagtgtcct gggtcccgtg ctgtatactc tgttcacttc      4140
     tgacctgcct tgtccgaatg aaccaaacac acttctggcc acctacgccg atgacacggc      4200
     gttcctagtc aactcctctt gccgtatcga ggcatcaaga atcacccagg aatttctgga      4260
     cacatacggc aagtggacca acaggtggaa catagcgatt aatggaagga aatcacaaca      4320
     ctgctgtttc gcttggagag tgcagtccct tccggaggtc aaacttcacg acgacatcat      4380
     tccgcaatca tcacaggcgc agtacctggg cctcattttg gataagcgcc tcacgtggag      4440
     gcagcatact tcgaaaatag cagctacttg tcgttccaag cttaggaaac tctactggtt      4500
     gcttaagcca acgagcaagc taagcctagc taacaaagtg ctactgtaca aatcaattgt      4560
     ggtgccctcg atgatgtact gcatccaact atggggcttg gcttcggatt ctaacgtcat      4620
     gaaaattcaa agggttcaaa accgggcgtt gcgcatgatt gcaaatgcgc cttggtacgt      4680
     cagaaacaaa gctctagaag atgacctcca cattccctct attagggaac agataaacag      4740
     gcactcgagt cggtataacg atcgtctcac agctcacaca aaccacctag cctcctcgct      4800
     ggctcacact actataagaa gacgtctaaa gcgaaggcat ccagccgatc tctggacaag      4860
     aggacgccaa atttctcgag tcctaaagca gtaaatttag cattagcatt tagcattgat      4920
     ctctagttat ctagttataa aaatttgtta atttccttcc tgttaggtat ttatgttatt      4980
     ttgttctatg tagtactcaa cgtattatag ccattaagtt ggctgattga cgtttaataa      5040
     atattaatat tgttatatac aaaaaaaaaa aaaaaaaaa                             5079
//
ID   Jockey-3_DF repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4560
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 971-971 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1704
FT                 /product="Jockey-3_DF_1p"
FT                 /translation="KIVARQQRKIQQVLRSVKATPPPASPLSISPSSHDPE
FT                 PELEVINGDEEVWWSPRPANKRRLDSRSPNSVSKILRNSNSPKTNVSANRF
FT                 SDLSDMDTATEPVEVPQTMGPNVSEEASSSFSLRQVSNNSKSTSNNTSTTN
FT                 KKNTKAVNNTAGNNKNVIRPSGSQEQLPSHKPPPIVVDHCENINGLIRSTD
FT                 KIVDPSKYSLKCHPNNSVSILASDSDTYRAITKSLTLKKVPYHSWQLKEDR
FT                 SYRVVIRGVHHSVPDVDIKESLTSAGHLVRFVNRPRSRFDKTKLVNLVFVE
FT                 LEPAANNKEIHGIKTLCRQRVQVELPYKKDDVVQCHRCQAFGHTKNHCQKL
FT                 FNCVRCGLQHGLEACLKDVRPVKCANCGGGHTASYKGCVVYQQVAQRKRVT
FT                 SQRRTIPQQFTDPNVWSNSAAPNSYANAVRGLASHPQRQQVPVTLTQSQQF
FT                 PPLGSDNRKQSQPSHQKVPHRQQQQPSQQQQRPQQQQQPDLQRTLPQQQRR
FT                 NSQQLVNDQQWQRQEQMFLQSNESLSVLVAQIDKLFQMMVSMMSLVSRLLP
FT                 QNTPGTAQAFPGSFPVNVSQP"
FT   CDS           1704..4424
FT                 /product="Jockey-3_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLANKAIELELFVQSHNIDIMLV
FT                 SETHFCSRSYYNLHGYDIHQATHPADRKRGGSAIIIKSGLKCYQSYNLQST
FT                 NVQCVSVKVTTDHGEVCIASIYCPPNFQCSADDFEKLFDDLGTNFIIAGDW
FT                 NAHHRLWGSRNSTSRGRALADVVQRSNSQVLATGGPTHYPYSQRTPTAIDF
FT                 AVYRGIRSECLSITESFELSSDHIPLIIKLRVAAQIIRNRPRILPRNASIP
FT                 RFQAAVNQLVNLNLVLNSPEEINDAVEMFVRSIHIAAESSTCGQVSSHSNP
FT                 PQALLKPEVMDLVRLKRSLRRRYLRSQDPVDKRAYRRAEDELKKLLHQTKR
FT                 EYFDEMLLNADPTKPYGFNLWKSTRNIKRQPLRKIPIKKTDDTWCRSDSEI
FT                 SLAFADELEKRFQPFDLASPEDLEETMAFINAPSPNALPIPHVSPEEVCLH
FT                 IRKLHISKAPGFDGIDNRIAKALPKKGILFLVLLFNSMLRIQHFPSQWKCA
FT                 VITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLSRIMGVRSVQAAIPD
FT                 HQFGFRHRHGTPEQAHRVVNHILNAFENKQYCSAIFLDVKEAFDRVWHYGL
FT                 LHKLKSLLPTGQFLLLKSYLLDRSFMVEVRGERSSIRFARAGVPQGSVLGP
FT                 VLYTLFTSDLPSSVEPGTLLATYADDTAFLVNSSCRIEASRITQEFLDSYG
FT                 KWANRWNIAINGRKSQHCNFTLRGKVLPRVELHDVTIPQSPQAQYLGLILE
FT                 KRLTWKEHTKKITATCRSKLRKLNWLLKPTSKLSLGNKVLLYKSIVMPSIT
FT                 YCIQIWGMASDTNVMKVQRTQNRALRMMANAPWYVRNDALANDLHIPSIRE
FT                 QINRHSSRYSDRLIAHPNHLAASLRNQAIRRRLKRRHPGDLWTRGRMVSRV
FT                 LKQ"
XX
SQ   Sequence 4560 BP; 1362 A; 1192 C; 935 G; 1071 T; 0 other;
     aagattgtgg cgcgacaaca gcgaaaaatc cagcaggtct taaggtcagt taaggctacc        60
     ccacctcctg catcccccct cagcatctca ccttcaagcc atgatcctga accggaacta       120
     gaagtcataa atggagacga agaggtctgg tggtccccaa gaccggcaaa caaacgccgt       180
     cttgactcca gatcaccaaa ttctgtctcc aaaatcttga gaaactccaa tagccctaaa       240
     accaatgtct ctgccaaccg attctcagat ctgtcggaca tggacacagc caccgaaccc       300
     gtcgaagtcc cacaaacgat gggccccaat gtctctgaag aagccagttc ttctttcagc       360
     ttaagacaag ttagcaacaa cagcaaaagt acctcaaata acacatcaac aacaaacaag       420
     aaaaacacaa aagccgtcaa caataccgca ggcaacaaca aaaatgtcat ccgaccgtct       480
     ggtagccagg agcaactacc ctcccacaaa ccacccccaa ttgtggttga tcactgtgag       540
     aatataaacg gactcataag atccacagac aagattgttg acccttccaa atactccctg       600
     aaatgccatc ccaacaactc tgtctccatt ctcgcatcag attcagacac atacagagcc       660
     ataaccaaat cgctgaccct taaaaaggta ccataccatt cctggcagtt aaaagaagac       720
     agatcttatc gtgttgtcat ccgtggtgtc catcattctg tcccagatgt agacattaag       780
     gaaagtctga cctcggcggg tcatttggtt cgatttgtca atagacctag aagccgcttc       840
     gacaaaacta agctcgttaa cttagttttt gttgaacttg aaccggctgc aaacaacaaa       900
     gaaatccacg ggatcaagac actttgtcgg caacgggtcc aagttgaact cccttacaaa       960
     aaggatgatg ttgttcagtg ccaccgttgt caagctttcg gacacaccaa aaatcattgc      1020
     caaaagctat ttaactgcgt cagatgtggc ctacaacatg gcttggaggc ctgcttaaag      1080
     gatgtccgtc cagtaaaatg tgctaactgt ggcggtggac atacagctag ctataaaggc      1140
     tgcgttgtat accagcaagt tgctcaacga aaacgtgtca catcccaacg cagaaccatc      1200
     ccccagcagt ttactgatcc taatgtttgg tcaaactcag cggcgcccaa ctcctacgct      1260
     aatgctgtcc gtggtctagc tagtcatccc cagcggcaac aagtccctgt gaccctcacg      1320
     cagagccaac agtttcctcc actgggcagt gacaacagga aacaaagtca gccaagtcac      1380
     caaaaagtac cgcatcgaca gcagcagcag ccatcacagc aacaacaaag gcctcaacaa      1440
     cagcaacagc cagatctcca gaggactctc ccacaacaac agcgacgcaa ctcacagcaa      1500
     ttggtcaacg accagcaatg gcagcgccaa gagcaaatgt tcttgcaatc taatgaaagc      1560
     ctgtcggtcc ttgttgccca gattgacaag ctattccaaa tgatggtgtc gatgatgagt      1620
     cttgtctcaa gattattacc ccaaaatact ccaggaacag ctcaagcatt ccctggatct      1680
     ttcccagtta atgtgtcaca accatgagcc aaatcggcct gaacattggt gtgtggaacg      1740
     ccgacggact ggccaataaa gccatcgagc tagagctctt tgtgcaaagt cataatattg      1800
     acattatgct ggtcagtgaa acacactttt gttcaaggtc gtactacaac ttgcatgggt      1860
     acgatatcca tcaagcaact catcctgctg atcgtaaacg cggtggatct gcaataataa      1920
     taaaatctgg tcttaaatgc taccagtcct acaatctaca aagcacgaat gtacaatgtg      1980
     tctctgtcaa agttacaacc gaccatggcg aagtatgtat tgcatctata tattgtccac      2040
     caaactttca atgttctgct gacgacttcg aaaaactctt tgatgatctt ggaacaaatt      2100
     tcataatcgc aggtgattgg aatgctcacc accgcctctg gggatcccga aactctacca      2160
     gccgaggaag agcactcgct gatgttgtac aaagatcaaa ctcccaggtc cttgcaactg      2220
     gagggcctac gcattatcca tacagccaaa gaacgccaac agccattgac tttgcagtct      2280
     atagagggat acggtccgag tgtctctcca tcacagaaag ctttgagctt agctctgatc      2340
     acataccgct tataataaag ttgagagtag ctgcacaaat aattcgtaat aggcctcgca      2400
     tccttcctcg aaacgcgagt atcccgcgct tccaagcagc agttaaccag cttgttaacc      2460
     tcaatctggt gttaaactct cccgaggaaa tcaacgacgc tgtagagatg tttgtccgga      2520
     gtattcatat cgctgccgag tcctcaacct gtggacaagt ttcaagccac tccaatccac      2580
     ctcaggctct tttaaaacct gaagttatgg acttggtaag gctgaaaaga tccttacgtc      2640
     gcagatattt gaggtcccaa gacccagtcg acaaaagggc ttaccgtcgc gccgaggacg      2700
     agcttaaaaa acttctgcat caaaccaagc gcgaatattt tgatgagatg ctcctcaatg      2760
     cggatcccac caaaccgtac ggctttaacc tctggaaatc gacacgaaac attaaacgac      2820
     agcctctccg aaagatcccc ataaagaaaa ctgacgatac atggtgcagg tctgactcag      2880
     agatttcttt agctttcgcg gacgaactag agaaacgctt tcagccattc gacctcgcga      2940
     gcccagagga tctcgaagaa acaatggcct tcattaatgc tccttcaccg aatgctctac      3000
     cgatcccaca tgtcagccca gaagaagttt gtcttcatat tcgaaagcta catatcagta      3060
     aagcgccggg attcgatggc atagacaata gaattgccaa ggctctgcct aagaagggta      3120
     tcctgttcct tgttctcctc tttaattcaa tgctacgtat ccaacacttt ccctcccaat      3180
     ggaagtgtgc tgtgataacg atgataccaa agccaggaaa accggagaac cttgtagagt      3240
     cataccgacc tataagcttg cttcccacat tctctaaaat attcgagaga atatttctta      3300
     gtagaattat gggagtaaga agcgtgcagg ccgccattcc cgatcaccag tttggtttta      3360
     ggcatcgcca tgggacccca gagcaagcac atcgagtagt taatcacatt ttgaatgcct      3420
     ttgaaaacaa gcaatactgc tctgcaattt tccttgatgt caaggaagct tttgatcgag      3480
     tatggcatta cggactactt cataagttga agtcattact tccgactggc caattccttc      3540
     tactgaaatc atacctgctt gatcgaagtt ttatggtcga ggtgagaggg gaaaggtcaa      3600
     gcattagatt tgctcgtgct ggcgttccgc agggaagcgt tctgggtccc gttctctaca      3660
     ccctgttcac atcagacctg ccaagttccg ttgaaccggg cacacttttg gccacatatg      3720
     ctgacgatac tgcctttctt gtgaactctt cctgccgaat cgaggcatca aggatcaccc      3780
     aggaatttct ggactcgtat ggcaagtggg ctaacaggtg gaatattgcc ataaatggca      3840
     ggaagtcgca acattgtaac tttactttga gaggaaaggt cctacccaga gtcgaactcc      3900
     acgacgtcac catcccacag tcaccccagg cgcagtatct gggactgatc ctagaaaagc      3960
     ggctcacctg gaaagaacac accaagaaaa taacagctac atgtcggagt aaactcagga      4020
     agttgaactg gttgcttaag ccaacgagca agctcagcct tggcaacaaa gtgttgctgt      4080
     ataaatcgat cgtgatgccc tcgattacat attgcattca gatatggggc atggcttctg      4140
     acactaacgt catgaaagtg cagagaaccc aaaaccgagc gctacgcatg atggcaaacg      4200
     cgccttggta cgttcgaaac gacgccctag caaatgatct ccacattccc tccattagag      4260
     agcagatcaa ccgacactcg agtcgttaca gcgatcgcct catagcgcac cccaaccacc      4320
     tagcagcgtc tctacgtaat caagctatcc gaagaagact gaaacggaga caccccggcg      4380
     acctctggac aagaggacgc atggtttccc gagtcctgaa acagtaattg ttactgtaca      4440
     tctcctgtta ttgttttcat gttatctgtt ctttgttatg ctctacgtat tatagccatt      4500
     aggttggctg atcgacgtaa ataaaactta tttgttattt aaaaaaaaaa aaaaaaaaaa      4560
//
ID   Jockey-3_DGri repbase;    DNA;    INV; 4713 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.07, Created)
DT   28-SEP-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon from Drosophila grimshawi.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DGri.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4713
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1325-1325 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1591..3666
FT                 /product="Jockey-3_DGri_1p"
FT                 /translation="MANQNNSKESAIPPALAQAQFTLSDLRALFSADSSHD
FT                 EQAVLLRSSANSPFDERAASVQSSLRANFNSQSVERLAADAATTVVPASSD
FT                 TDVDIMFATTTINASTYESTQLNFSEMLTDFCGKTDSTLEPTTTAQMLQQA
FT                 AEKSLTVCPTPRTVSEQPKATYAQQLLSTTSACSPSTTIVPKTAISQAAKR
FT                 KTKPPVIGAKIKCPAQRAFGSLSSNRLKRRFAGLPRKPSAGANLYRRSVPS
FT                 ESSESESLVSCPNSSVKIVQPKAITDREQNVVVESHMKSNQATCSEVKIPA
FT                 IFVHDVIEIQPLLDKVNNIPGIGKFTTKCSKFNGVKFICEDLNTYRALLSA
FT                 LKNDDTDLHTHQLRSDRGYRVVIRQLHHSTPTEWINNTLRSLGFGVRNVNV
FT                 IKHNRTLQPMNIFAVELQPTIDNFNDTILSLTLLGNQRVVVERQLRRQDPA
FT                 QCHRCQLFGHTKNYCRRPFICMKCAGAHPSTACSATRIANPKCANCGGSHV
FT                 SCYKGCPKYKEARAKLLINKLRSELPTSSSGSGGRSGANTRSGQQQQQQQH
FT                 QQQQHQQQQQHQQQQRQQQQQQQQQRQHQQQQQQQSKQQQQQQQQQQQQQQ
FT                 QQQLKQQQQQQQQQQQQQQQQQLKQQQQQDQRQTSPRLQCGPVDNAPRLLA
FT                 VEAGLNRLLLMERKVDALVNLVRAFLSTKGSDLSSLIQGHKAN"
XX
SQ   Sequence 4713 BP; 1461 A; 1099 C; 912 G; 1230 T; 11 other;
     cagcaggatc agcagcaaac ttcgccacgg cctcaatgtg gcccggtgga taatgcacca        60
     cggctacttg cagttgaggc aggtctaaat agactgctgt taatggaacg caaggtagat       120
     gcccttgtta acctggtgca agcctttctg tccactaaag ggagtgacct tagttcgctc       180
     atacaaggac ataaagctaa ttaaataaaa aatacagaca cctcaaatta atacagcaca       240
     acaagctatc acaatttcta caatttttat tacaatataa acttcattat aaattataaa       300
     atcacaatat aaaaattaca tactataaac tacataatac aactataaaa ctacaacata       360
     attataaaga atataaatat aattataaca tattaaaata ttaaaatact aaaacattaa       420
     aataatatcc agcgcgattt ctgccgcctg ccgttaacac tgcgaactct cgctaatatt       480
     tgttgaggtg tctgcctatt acctgcagtg gcttcgctgc tgcctcacaa cgctaaaaca       540
     aaattaaata aattaaacaa acacgttact atgatgtatg gggacaatca atgcctcact       600
     acttacgcgg cgacttcacg tcgagggagg ctcttctttg tgtccttctc tgatgttggc       660
     ctgctgtccg ggggagcctg taaagattaa gcgtatcaag ttattacttt ttatcatttt       720
     gtactttaat tcattaattt aatgttcact attcgcaaac atcgtttgta aacatcggct       780
     ggcgttgcca gatggctgat ttaatcagct gtttttctgg ctgcggccgg cgccaacctt       840
     tgtcacagtg gctaattgta ctgtaaaaaa tgttattttt aaaattattt tatatttact       900
     ttttttttgt aaaatttttt tttcataaat tctattcata tttgtctagt acgtaatgta       960
     agaacaaata aagaaaggct ttgcaggcaa cttttagttg tctgtgagcc cttattgtgc      1020
     gagcatcgcg agcaccacac tgaaaaaaaa aaaccacact gaaaaaaaag aaaccacacc      1080
     gaaaaaaacc acctgaaaaa aaccanactg aaaaaaaaac actgaaaaaa aaagcaccac      1140
     accgaaaaaa aaaannatcc tgaaaaaaaa agnannatcc tgaaaaaaaa aaggtgtaaa      1200
     aagtttaaaa agttacaaca acattttagc aacaatttgc caaagttaaa atgtttaaac      1260
     aataaacata tgccaagcaa ccaagcggca gcatcattan taataaatag actaaaacgg      1320
     cgcatataac ancacgccat ttgttttttc ggcgcagaca actcgctatt aattaaacaa      1380
     ttaaatcagt gttaatcgtt ttctgtcctc gttttgtgtt tcatttatac gtgttagtgt      1440
     tcgtcggctt tatngcggta aagccttatt tgtgaacttt gatacgcatg tgcaatgaac      1500
     tcttttcacc aatcgtgcct gtagtgtgta tgtgctgcat acacgcatac tagagtgcaa      1560
     cggttctgaa cttggatagc atccacaacg atggccaatc aaaacaactc taaagagagc      1620
     gccattccac cggcactcgc gcaagcgcaa ttcactctct cggatctgcg agctctcttc      1680
     tcggcagact catcacacga tgagcaagca gtgctgcttc gctcttcggc aaactcacca      1740
     tttgatgagc gagccgcgtc tgtgcagtca tcgctgagag ctaatttcaa ctcgcagtct      1800
     gtggagagac ttgcagccga tgcagctacc accgttgtgc ccgccagctc ggacaccgac      1860
     gtcgatatta tgtttgctac aacaactata aatgcatcaa cgtatgagtc gacacagctc      1920
     aacttctccg aaatgctgac cgatttttgt gggaaaacgg acagcacgct ggagcctact      1980
     actacagccc agatgctaca acaagctgca gaaaagtcgc tgactgtctg ccctactcca      2040
     cgcactgtaa gtgaacaacc caaagctact tatgcacaac agctgttgtc cactacaagt      2100
     gcgtgctctc ccagcacaac aattgtgcca aaaacagcta tttcacaggc cgctaagcga      2160
     aagacaaagc cgccagttat tggagcaaaa atcaaatgcc ctgcacagcg ggcttttggc      2220
     tctttaagct ccaaccggct aaaacgcaga ttcgctggat tgccgaggaa accttctgcc      2280
     ggtgctaatc tttacaggcg gagtgttcct tctgaatctt ctgaatctga atccttagta      2340
     agctgcccaa attccagcgt gaaaattgtg cagccgaaag ctattaccga ccgtgagcag      2400
     aatgttgtgg ttgaatccca tatgaagagc aaccaggcga cctgctctga ggttaaaatt      2460
     cctgctattt ttgtgcatga cgttattgaa atccagccat tgctggataa agttaacaac      2520
     attccgggca ttggcaagtt cactaccaaa tgctctaaat tcaatggagt caaattcatt      2580
     tgcgaggatt tgaacacata ccgtgccctg ttgagcgcat taaaaaatga tgacactgat      2640
     ctacataccc atcagcttcg cagcgaccgt gggtataggg tcgtcattcg ccagctacat      2700
     cactcgacac cgaccgagtg gataaacaac acattacgca gcctcggctt tggtgtcagg      2760
     aatgtcaacg ttattaagca caataggact ctccagccta tgaacatctt cgccgtggag      2820
     cttcagccta ctattgacaa ctttaatgac acgatcctgt ctctcacact gctgggaaac      2880
     cagcgagttg ttgtggagag acaactgaga agacaggatc ccgctcaatg tcatcgctgt      2940
     caactatttg gacacacaaa aaattactgc cgccgccctt ttatctgcat gaagtgtgcg      3000
     ggagcgcatc cttccacggc ctgcagtgcg acgaggatcg ccaatcctaa gtgcgccaat      3060
     tgcggaggca gccatgtgtc ctgctacaaa ggttgcccca aatataaaga ggctcgggca      3120
     aagcttctta tcaacaaact gcgctcggag ctgcccacct cctcatctgg gagcggcggg      3180
     cgcagtggtg ctaacacacg ctctggccag cagcagcagc agcagcagca tcagcagcag      3240
     cagcatcagc agcagcagca gcatcagcag cagcagcggc agcagcagca gcagcagcag      3300
     cagcagcggc agcatcagca gcagcagcag cagcagtcaa aacagcagca gcagcagcag      3360
     cagcaacaac agcagcagca acagcagcag cagctaaaac agcagcagca gcagcagcag      3420
     cagcagcagc agcagcagca gcagcagcag ctaaaacaac aacaacagca ggaccagcgg      3480
     caaacttcgc cacggcttca atgtggaccg gtggataatg caccacggct gctngcagtt      3540
     gaggcaggcc taaatagact gctgttaatg gaacgcaagg tagatgccct tgttaacctg      3600
     gtgcgagcct ttctgtccac taaagggagt gaccttagtt cgctcataca aggacataaa      3660
     gctaattaaa taaaaataca gacacctcaa attaatacag cacaacaagc tatcacaatt      3720
     tctacaattt ttattacaat ataaacttca ttataaatta taaaatcaca atataaaaat      3780
     tacatactat aaactacata atacaactat aaaactacaa cataattata aagaatataa      3840
     atataattat aacatattaa aatattaaaa tactaaatca ttaaaataat atccagcgcg      3900
     atttctgccg cctgccgtta acactgcgaa ctctcgccaa tatttgttga ggtgtctgcc      3960
     tattacctgc agtggcttcg ctgctgcctc ccaacgctaa aacaaaatta aataaattaa      4020
     acaaacacgt tactatgctg tatggggaca attaatgccc cactacttac cgacgactcc      4080
     tgtatgatgc ggcgctgcgg actgctccag atgcactcct gctatttttg gatttctggt      4140
     gctccgtccc tgcgtcgttc tgcgcgagtc tgggtactcc tgctattaaa acaaaatgcn      4200
     tgttattagc ttttgtttat ctacaaaaca caaactgcac ttacctgttc atccatggct      4260
     gactcctgat gcggctcttc acgtcgaggg aggctcttct ttgtgtcctt ctctgatgtt      4320
     ggcctgctgt ccgggggagc ctgtaaagat taagcgtatc aagttattac tttttatcat      4380
     tttgtacttt aattcattaa tttaatgttc actattcgca aacatcgttt gtaaacatcg      4440
     gctggcgttg ccagatggct gatttaatca gctgtttttc tggctgcggc cggcgccaac      4500
     ctttgtcaca gtggctaatt gtactgtaaa aaatgttatt tttaaaatta ttttatattt      4560
     actttttttt tgtaaaattt tttttcataa attctattca tatttgtcta gtacgtaatg      4620
     taagaacaaa taaagaaagg ctttgcaggc aacttttagt tgtctgtgag cccttattgt      4680
     gcgagcatcg cgagcaccac actgaaaaaa aaa                                   4713
//
ID   Jockey-3_DK repbase;    DNA;    INV; 4849 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4849
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1340-1340 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..2038
FT                 /product="Jockey-3_DK_1p"
FT                 /translation="MDNSFKLKDMRKIXXAGPGEAQXDLSTFLDRLVDXNA
FT                 TNKSSPAEVSSSSESDFDIKANVAAVQKKMRDALNCPVEKFNALYASHSEI
FT                 EADPPAEKPTTSRKAREKASLVNAATKLQASKKNXLPSKALTKLDAAQALD
FT                 VIKSSALPLWRGAAPGGLIQNPQPSWQTVPGRPSFKRRAPGADLLSRKLKI
FT                 SKPQMANRFSPLXSSDLAQDMDCEDEDVVVEETSSMAEQVAAAAQPPATTI
FT                 YKPRPITVPNVNNIVEMEKVLLQEIEEDGFELRTARSGDLRIYAKDSTTHR
FT                 AITRLLSANNVIYTHFCLKEDRSFRLVLKNLAATTPQSLIIQEFTKLGHTV
FT                 VNLYNPPSRTRSSGTQEKSSDQARQNCWFVDLKQAPNNKEALLIAKIGRQR
FT                 VTAELKRDSNRLKQCFRCFGFNHTKNYCLKPPVCGRCGDSHWTGSEACKAV
FT                 IAADLCCANCGEGHAAYDKKCRIFASLLKRVLPRENLPFNNSGRGARRRDT
FT                 AIPSAMLQPGLSYAQRTRAQQQQPAAHTAAFELPPGFRQASYNLQDDFPVL
FT                 GSRGRSHNTTAPPNPDSDWDMTRIVTMLTSLKATVDQLASSLATISLVVRE
FT                 LKRGMPTIHGDP"
FT   CDS           2028..4721
FT                 /product="Jockey-3_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGTLKVGIWNARSLLANREELLVYLSRHSIDIMLVSE
FT                 TFLKHGVFFNIPGYFLHRADFPGAVTRGGAAILVRSGLTYFQHNPIRLGLA
FT                 QMAMITLNSPFGDLDVAAVYLPPRPTWTCDGFEALLNLCGDKAILGGDFNA
FT                 KHRNWGNFRADRRGTMLVEALDNTNTQILATGRPTCFPCNGRTPSALDFAL
FT                 LKGLHGRRLTINESFELSSDHIPLIVNLHLPGSAYVPRRTLLPPGSDVRMF
FT                 KRTLEDSIHLHMEINSAEDVDDAAILLEDKIKAAAELAMPPDGSRHSVPRF
FT                 SLPPEIRALIDTKHRLRREYSRTHEARVLRVYRRLAHRVRKLLRLLRQERI
FT                 DKELQEATPDRDTDYALWKLAGQSKRQVTPKFPVRKADGNWAKSPQDRAEA
FT                 FAESLEERFTPFATSSQERTEKVRASLEIPHQMTPPISPILLPEVRARIRK
FT                 LKNRKSPGADGITNRVAKLLPVKALLFLVLVYNAALRLGHFPLSWKNANVV
FT                 MIHKKGKCCNNVANYRPISLLPTFAKVFERCILDRIQRLPEVIEAIPRHQF
FT                 GFLKGHGTPEQLHRVVDFIVEGYQRNQYVVAAFLDIQQAFDRVWHEGLLSK
FT                 IKELLPPQLFEIICSYLKDRSFQVVQDGVASSTRNIRAGVPQGSVLGPTLY
FT                 NLFAHDAPLHLSSERACAATYADDTAVLARSSCIYSATDKLQILLKRFENW
FT                 ACRWNVAINTEKCAVVTYTLKRSTCPGVFLHGQLLPQLVEHTYLGLVLDKR
FT                 LTFSTHIKQIRAKLENTARRISWLTGPKSKLSLRCKTRLYQSLLAPIWQYG
FT                 VAVYGTAARSHLRRIQAFQARFLRRITGAEWYIRNRDIRTELHVPAVGDSI
FT                 NTIAARHRTRLIRHPNPLARALPAARGRRRLRRVIIRELPTRRIT"
XX
SQ   Sequence 4849 BP; 1293 A; 1250 C; 1192 G; 1103 T; 11 other;
     catcgaccta actgtcatag cgtgtggacg tgtttcattt ttgtgctcct caaaaaaaat        60
     aaaaaatttg ttttttttcc tataaaaaat attttcggtc ttccgttgaa aatttgtttt       120
     ccaaaatagc gtcttgtgag tgtgttttgg gtcaacttcg tgtacgtctg cctctcgctt       180
     tgcgcttgcg caagcgggag ggttaatwat ggataattct tttaaactta aagatatgcg       240
     taagattkcc wctgcaggcc cgggcgaagc tcaaagmgac ttgtctacct tcttagacag       300
     gttggtagat wccaatgcca ccaataaaag ctctcctgct gaggtgtcaa gctcttcgga       360
     atcagatttt gacattaaag caaatgtggc tgctgttcaa aaaaaaatga gggatgcttt       420
     aaactgccct gtggaaaaat ttaacgctct ctatgcctct cattctgaga ttgaagctga       480
     tcctccagct gagaagccaa ccacctcccg taaggcaagg gagaaggcwt ccctcgttaa       540
     cgctgctaca aagctgcaag caagtaagaa gaaccmgctc cckagtaagg cgctgactaa       600
     attggacgca gctcaagctc tggatgtaat taagtcctca gcactccctc tgtggagagg       660
     agccgctcct gggggactca ttcaaaaccc ccagccgagc tggcaaactg tcccgggcag       720
     gccttccttc aagaggcgtg ctcctggagc tgatctatta tccaggaagt tgaaaatcag       780
     taaaccccag atggcgaatc ggttctcccc ccttkcttcg tcagacctcg cgcaggatat       840
     ggattgtgag gatgaggacg tcgttgtgga ggagacttcc tctatggctg aacaagtggc       900
     tgctgctgct cagccccctg ctaccaccat ctacaaaccg aggccgatca ctgttcccaa       960
     tgtgaataac attgtagaaa tggagaaggt gctcctgcag gagattgagg aagatggttt      1020
     tgagctgcgc actgcccgct ctggagactt gcgcatatat gccaaggact ccaccaccca      1080
     cagagccatt acccggctcc tgtccgctaa caatgtcatc tacacgcatt tttgcttgaa      1140
     agaggacagg agcttccgtt tagtcctcaa aaacctggct gctactacac cgcagagcct      1200
     tattattcag gaatttacaa aattggggca tacagttgtg aatctctaca accccccgtc      1260
     tagaacaaga agctctggaa ctcaagaaaa atcatcggac caggcgaggc agaactgctg      1320
     gtttgtggac cttaagcagg cccctaataa taaagaagcg ctattgattg ctaagattgg      1380
     caggcagagg gttacagctg aattaaaaag ggatagcaac aggctgaaac aatgctttcg      1440
     gtgcttcgga tttaatcaca ccaagaacta ttgccttaaa ccaccagtct gcggaaggtg      1500
     tggagacagt cactggacgg gctctgaggc ctgtaaggca gtcatcgcag cggatctctg      1560
     ctgtgctaac tgcggagaag gccatgcggc atatgacaaa aaatgccgta tctttgcatc      1620
     tttgcttaag agagtcctcc ccagagagaa tttgccattt aacaactcag ggagaggtgc      1680
     ccgcagacgt gatactgcaa taccgtcggc aatgcttcaa ccagggttgt cgtatgccca      1740
     acggacgaga gcccagcagc aacaaccagc cgcgcatacg gccgcctttg aacttcctcc      1800
     tggattcagg caggcaagct ataacctgca ggacgacttc ccagtgctag gaagccgagg      1860
     caggtctcat aatactacag cgccacccaa cccagactct gattgggaca tgacgaggat      1920
     agtgaccatg cttaccagcc tcaaggccac tgtggaccaa ttggcttcct ccttagctac      1980
     gatatctctt gttgtaagag agctgaaaag aggaatgcca actatccatg gggaccctta      2040
     aagtgggtat atggaatgcc agaagtctcc ttgctaatcg agaggagctt ctggtgtacc      2100
     tctcaagaca tagcattgac attatgcttg tgtctgagac cttccttaaa cacggagtat      2160
     tcttcaacat tcctgggtac ttcctccata gagctgactt ccctggtgct gtaaccagag      2220
     gtggagctgc gattttggtc agaagtggac tgacctactt tcagcacaac ccgatacgcc      2280
     tgggattggc acagatggcg atgatcactc tcaactcgcc ttttggagat ctggatgtgg      2340
     cagcggtcta ccttccccct cgccccacct ggacatgtga tggatttgag gctctgctta      2400
     acctttgtgg agataaagcc atcttaggag gagacttcaa cgccaagcac cgcaactggg      2460
     gcaacttccg agctgacagg cgaggcacaa tgctggttga ggccctggat aacacgaaca      2520
     cacaaatcct ggccactggc agacctacgt gctttccctg caacggcaga accccttctg      2580
     ctctggattt cgccctactt aaaggactcc atggacgtcg gctgactatt aatgaatcct      2640
     ttgagcttag ctcggatcat atcccactca tagtcaacct acacctgcca ggaagcgctt      2700
     atgtgccaag aaggacgctc ctgccccccg gatctgacgt caggatgttt aaaagaacct      2760
     tggaggactc aatacacctg catatggaga ttaactctgc cgaggacgta gatgacgctg      2820
     ccatacttct ggaggataaa atcaaggctg cagcagagct cgcaatgccc ccggacggaa      2880
     gccgccactc tgtgccccgc ttttctctac caccggaaat cagggcactg attgacacca      2940
     aacacaggct caggagggaa tactccagga cgcatgaagc cagggtgctg agggtgtacc      3000
     gmagactggc acaccgggtc aggaagctgc tgagacttct acgtcaggag cgcattgaca      3060
     aggagctcca ggaggcaaca ccagacaggg acacggacta cgcgctttgg aaacttgccg      3120
     ggcagagtaa aaggcaagta acccccaagt ttcctgtgag aaaagcggat ggaaattggg      3180
     caaagtcacc acaggaccga gcggaagcct tcgccgaaag tctggaggag cgatttaccc      3240
     cttttgcaac atcctctcag gaaaggacgg aaaaggtccg tgcttctcta gaaatacctc      3300
     accaaatgac gcctcccatt tcaccgatcc tgcttccaga agtgcgggcc aggatcagga      3360
     agttgaagaa ccggaagtcg ccaggagcgg atggcatcac caatagagtt gctaaactcc      3420
     ttccggttaa ggcactcctc ttcctggtcc tggtatacaa tgctgcttta agactcggac      3480
     acttcccgct ctcctggaaa aacgcaaacg tggtaatgat ccacaaaaag gggaaatgct      3540
     gcaacaacgt agccaactat agaccgatca gcctccttcc cacgtttgcc aaggtgttcg      3600
     agaggtgcat acttgacagg atccagaggc tacctgaagt catcgaggcg ataccaagac      3660
     accagttcgg atttctgaaa ggacatggta ctcctgaaca gctccaccga gtcgtcgatt      3720
     ttattgtcga ggggtaccaa aggaaccagt atgtcgtggc tgcatttctc gatattcagc      3780
     aggctttcga cagggtctgg cacgaggggc ttctgtccaa gatcaaagag ctcctgccac      3840
     cacagctctt tgagatcatc tgcagctacc tcaaggatag gagcttccag gtggtgcagg      3900
     atggagttgc ctcctccacc aggaatatca gagctggtgt ccctcaagga agcgtattag      3960
     gacccacgct ctacaatcta ttcgctcatg atgccccgct tcatctaagc tctgagcgcg      4020
     cgtgtgctgc tacatatgca gacgacaccg cagtattggc tagatccagc tgcatctata      4080
     gtgccactga taaacttcag attctcctca agaggtttga aaactgggcc tgtaggtgga      4140
     atgtggccat caatacggag aagtgtgcgg tggtcacata caccctgaag cgaagcacat      4200
     gcccaggtgt cttccttcac ggccagcttc tgccacaact tgtggaacac acatacctgg      4260
     gactggtgct tgataagaga ctgacgttca gcacacatat caagcagatt agggccaaat      4320
     tggaaaacac tgccaggcgc attagctggc tcacaggccc taaatcgaag ctgagcctta      4380
     ggtgcaagac tcgcctgtac cagtccctac tggcaccgat ttggcaatac ggagtggctg      4440
     tatatggcac tgcagccaga tcgcatctgc gaaggataca agccttccaa gccagattcc      4500
     taaggcgtat tacaggtgct gagtggtata tcaggaaccg ggatatacgg acagagctac      4560
     atgtccctgc tgtgggagac tccataaaca ccattgccgc ccgacaccga accaggttaa      4620
     ttcgacaccc caacccgctg gcgagagcac tgccagctgc aagaggaaga cgacgactta      4680
     ggagagtcat catacgggag ctgcccaccc ggcgaataac ctagttaaat atttttttga      4740
     attgtttcct ctgctacatg ttattgaacc aatgattgaa tagtagatat taagcttaaa      4800
     gcagcaaagc ttwtaaaacc aataaatatt atgcggaaaa aaaaagaaa                  4849
//
ID   Jockey-3_DMel repbase;    DNA;    INV; 2348 BP.
XX
AC   .
XX
DT   16-AUG-2018 (Rel. 25.03, Created)
DT   16-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit fly: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2348
RA   Bao W.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (16-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 2348 BP; 806 A; 548 C; 421 G; 549 T; 24 other;
     aaatgttctc ccttmgtata tkwttatgga atgcgaatgg cgtctcccgc cwcaaactck        60
     cgctgggctc ttgaaagata aagmggttga cattatgttg ctctcagaga cccatctaam       120
     cakcaagtac aattttcaaa taamtggcta cgkgttctac gccactaatc accccggtgg       180
     aaaagcataa aaggttgaac tttctatcac ctgggaaacc cacatactgg cctacagacc       240
     cccgaaaact accagatctg attgattttg cgatcgtaag aaaaattcct ttaacgctgt       300
     aacacttgaa gatctctcat ctgacmwctc acccgtactc ttcaacattt ttcggcagcc       360
     agaaattaaa gaaaggccgc gtcatcttac aacatcagcc acaaactggt taaagtataa       420
     aaagtatgtc agcacacact tagaactcaa tcctatgcta gacacaaatt cagatattga       480
     aagttctgta aaaacatttg agtcgataat aacaaaagct gctagtgctg caacacctca       540
     aatgacttct aagcaacact taagatatgg gactacgaac aggcaaatcg agaacttagt       600
     gctagaaaaa cgacgtctcc gacgagagtg gcaaacccac agatcaccag ccacaaagca       660
     acggctgaag acggcaacac gcgccctaag aaagctctta agaatgagaa ggataaagaa       720
     cattgcggta tattgagaaa ctatcgccga caaacacaag gcagtcattg tggaaggcaa       780
     atctttgcct aagtatgcct atggaagcag agatgcctat tcgggataac actgggaaat       840
     gggcccgtag tgatgcagaa aaggcaaatg tatttgctgc tcatctacaa aaggtgtttc       900
     agccgaaccc accatcaatt ggctttacgc tcccgcacgt ctccgatcca ctgatccagt       960
     tatcaaaaac aactgaatcc aaaaaaagct ggccgtgact taatatctcc aaaaataatt      1020
     atggagctac caaactgtgc tgtacgatat atcagcacat tgttcaatgc catagctaaa      1080
     aacaattaat ttcccaacca atggaaaaaa tccaccataa ttatgattcc aaagccagga      1140
     aaagatagaa cgcagccatc atcctacaga ccaataagtc ttctttcatg catctctaag      1200
     ctctttgaaa aattactcat cattcgtata caagcacacc tgcaactcgt aacaagttcc      1260
     atcgcatcaa tttggattcg tcaaaatcat ggaacatgaa taacaacaga gatcagaact      1320
     tcttttgagc acaaggaata ttgcacagcc gtattcctcg acgtcgccca agcagtcgac      1380
     cgagtgtggt tggagggcct tatgtataaa ataaaaacac tccttccacc aaatacacac      1440
     aagctgcttg gatcttatat ttaaaaaaaa aaaaaaaaat tgctgaaaag tgcaatgcga      1500
     atacctccga ggaacatgtc attgaagcgg gaagccctca gggtatacgc agctgacatc      1560
     ccttcaagtg accgaacaac actattaact tttgctgatg acaccgcaat tctcagcmsa      1620
     tcgaaatgcc ctctgcaggc ggctkgtcac staactsttg tggagaattg gctggctaac      1680
     tggcgtattg caatcaacga gcagaaatgc aaacatgtca catttacgct taataggcgt      1740
     agctgtcccc tattaactct aaataacgtc maaattccwc gaagtkattc akccatttac      1800
     cccggagttc atcacctggc gtaagcacat tgaagcaaga aaacgatttg aagctgaaag      1860
     acagcaggtt tcactggctt atcaactcac gctctccact aagtttggac tacaaggtgc      1920
     tgttatacaa cacagttcta aaaccaatat ggacatatgg atgtcaacta tggggcaatg      1980
     catgcaacag caacattkaa ataatacaac gagcacaata aaamatcctg cgaacaataa      2040
     ctggtgcacc ttggtacatc cggaacgcga acatccacca agaccagttg taaaaactga      2100
     aattgtccag cagaaggcta aatacctaaa gcgacttgca acgcatccaa atcgattggc      2160
     caaatcactt atagaagtga ataatmacac gcgcctccaa cgtaacgatt cacctgccca      2220
     gatgccaaga cctagggcca tttagtataa ctttataatt aagtgagtag attaagattt      2280
     gtaaacttat tgttagtctc tatataccaa gagaagattc aataaaattt caccacccct      2340
     aaaaaaaa                                                               2348
//
ID   Jockey-3_DMo repbase;    DNA;    INV; 5435 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   30-SEP-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DMo.
XX
NM   Jockey-3_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5435
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
RN   [2]
RP   1-5435
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (30-SEP-2020).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence extended and updated. 5'-end is truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1768
FT                 /product="Jockey-3_DMo_1p"
FT                 /translation="APAPTPSKVPVKKNVVMAQPSTSRAAAQLLKSKASTS
FT                 AQTLVADYFKAKDAIKSGAKPLANERAAKRTAEKGDSPKKKTAQLCAVDLD
FT                 GSDEDCLPIDDLIRTTRTEDTLREATCLANEVCTAAKVQTMPPNAAAAAVT
FT                 TAAAVTAAAAATTTGASREQPSAKPAPLFIANVTDIMPLLLRLDDAVGQDN
FT                 YSTKPAANHGIRVQCKDVATHRKLVRYLDANSIENYTFQLKCERGYRAVIR
FT                 HLHFSTPDHYIREQLAKLGHEVRFLRGIKSRFSKEPLDLFEVELAASANNA
FT                 DLLQITAIGNQRVKIERPYKTNEIAQCHRCQKFGHTKNYCRRPFACVKCGA
FT                 NHASTDCGKQKGDQTPAKCANCSGPHAASYKGCPSYKEACKKRENESATQL
FT                 AKVISNLAKPAATTAAQSSRANMPNMSNMPNLLQQAPPQSRSQTVSAGPSY
FT                 SAALRAGLQFAQPVGPAAISSKQRQSRQKATKVSQQQQQQQQQQQQQQVRL
FT                 PRQASAQRPPQPKRSRSLSTRRRHQQPLDGGAHPVSGGVHFQRFEQPINAN
FT                 MPSMPVQVSSRLEAKLDKLIEMMTTVFAFLMARVGPNEPSNV"
FT   CDS           1752..4823
FT                 /product="Jockey-3_DMo_2p"
FT                 /translation="MSLQMSSNVSTYPSASRRNAALQPAVTQRVNNIKISF
FT                 WNAAGVKNKLNELNLYLFKHDVDIMLVSETHLTDSDSIAINGYIVYIANHP
FT                 SNRRRGGAAFIIKQHICHYAMRFTSNDSHQSVEVSVSLQNGRHINIVSIYC
FT                 PPQVIWSGQDFNNLLSSLGDTFIVGGDWNAKSQWWGNARSCLRGRTLVNSI
FT                 LQVNCNILATGSPTHFPFNSRQTPSAIDFALFKGIRRDLLAITDSFELSSD
FT                 HLPLQVQLVEKPVTSRAKGHLLDLNANINKFQSYLNDKILLNTEINSADDI
FT                 DDAVNIFVRNIEDAANYANAQHPRKITRTRFRVDRQTLQLIDAHKQVKRYL
FT                 TRNRNPILKMLCNRLSNRIRKELIYARQKYEEELFRSIDPTDRYSMQKLWR
FT                 LTNEIKRQPAPNLPLLKSSSGNGSNAQNVWCKTTAEKAETFAASLEQRFQP
FT                 IVTTPPSVLAEIEAQVSQPSSTASVSFRPVTAAEVISHISTLENKKAAGLD
FT                 QIDNHTIKALPLKAVLYLVLICNNSLRLSHFPSSWKLAVVKMVHKPGKPTH
FT                 HVASYRPISLLSGLSKILEYLILSRMLEQDTLVNAIPNHQFGFRKAHSAEQ
FT                 QLGRVTQFIIKAFDDRKYCSAVYMDIKEAFDRVWHTGLKYKLKMILPDALY
FT                 RILCCYLVDRTFIVECHGGCRSGIKQIHAGVPQGSLLGPILYNIYTSDIPR
FT                 PTRLRGILIATYADDVIVLSADSRQAVALSQQQAYMDSLAEWASKWCITIN
FT                 ANKTMHIMHTLRVIAPYQAIRIGNETIENGTSHSYLGVTLDTKLRFSQHVT
FT                 TVVTRVRARLKKIDWLINKDSKLTLRTKVIIYKQLVAPLWQYSLPVWGALI
FT                 SEAQFSRIRVVHNKALRAISGAQYFVSNARIRAELQVLSADDIFNNLCAKY
FT                 YDRLRVHTNNLAKNIAYDPFIPQRITLARYTSLVNTHLANDIALRTQRLLQ
FT                 READEIAESRERFLRRREAQQHNEAAQAAAQQPQRLPVFEGIAPMPLPLPP
FT                 PSPLAAYRVLFRSHRDQS"
XX
SQ   Sequence 5435 BP; 1535 A; 1321 C; 1181 G; 1398 T; 0 other;
     agcgcctgcg cccacgccat cgaaagtgcc ggtgaagaaa aatgtggtta tggcacaacc        60
     atcaacttct cgagctgcgg ctcagttatt aaaatcaaaa gcttcaactt cagcgcaaac       120
     tttggtcgct gactatttta aagctaaaga tgctattaaa agtggcgcga agccacttgc       180
     aaacgaaaga gctgcaaaga ggactgcgga gaaaggcgac agccccaaga agaagactgc       240
     gcagctgtgc gcagttgatc tggatggcag tgacgaggac tgcctgccaa ttgacgactt       300
     aatacggacc accaggactg aggacacgct gcgagaggca acttgccttg ccaatgaagt       360
     ttgtacagct gcaaaagtgc aaactatgcc acctaatgct gccgctgcag ctgtcactac       420
     tgctgccgct gttactgctg cagccgctgc cactacaacc ggagccagcc gtgagcaacc       480
     gagtgcaaag ccagcgccgc tatttatcgc caacgtgacg gatattatgc ctctgctatt       540
     acgactggat gacgctgttg gccaggacaa ttactccacc aagcctgctg ctaaccacgg       600
     cattcgtgtc cagtgcaagg acgttgccac gcaccgcaag ttggtaagat atctcgacgc       660
     aaattcaatt gaaaattaca catttcaatt aaaatgcgag cgcggctata gagctgttat       720
     tcggcatctg catttctcca ctccggatca ctatattcgt gagcagttgg ccaagttagg       780
     gcacgaagtc cgctttttaa gaggcattaa gtctcgattt tcaaaagagc ctcttgatct       840
     cttcgaggtt gagttggccg ccagcgcaaa caatgccgat ttgctgcaaa taactgccat       900
     tggcaatcag cgcgtcaaaa ttgagcggcc gtataaaacc aacgaaattg ctcaatgcca       960
     taggtgccag aagttcgggc acacaaaaaa ttactgccgt cgccccttcg cctgcgtcaa      1020
     gtgcggcgca aatcatgctt ccacggactg tggcaagcaa aaaggtgacc aaactccagc      1080
     gaagtgtgcc aactgctccg gcccacatgc cgcgagctac aaaggctgcc cttcttataa      1140
     agaagcgtgc aagaagcgcg aaaatgaaag tgccacgcaa ctagctaaag tcatcagcaa      1200
     cttagctaaa ccagctgcca ctactgctgc tcagagcagt cgagcaaata tgccaaacat      1260
     gtctaatatg ccaaatcttt tacagcaagc cccccctcag tcacgatcgc aaactgttag      1320
     tgcagggccc agttattcgg cggctcttcg ggctggcctt caatttgctc agcctgtcgg      1380
     accggcagct attagcagca aacagcgtca gtctaggcaa aaagccacca aagttagcca      1440
     gcaacaacaa caacagcagc aacaacaaca acagcaacaa gttcgtttgc ctaggcaggc      1500
     aagcgcgcag cgaccgccgc agccaaaacg tagccgtagt ctgagtacgc gccgtaggca      1560
     tcagcaacct ttagatgggg gtgcgcatcc tgttagtggg ggtgtccatt ttcaacgttt      1620
     cgagcagcca ataaatgcga atatgccaag catgccagta caagttagct ctagattaga      1680
     ggctaaatta gataaactca ttgagatgat gaccactgta tttgccttct tgatggccag      1740
     agttggtccc aatgagcctt caaatgtcta gtaatgtatc cacttaccca agtgccagta      1800
     gacgcaacgc tgcactgcag cctgctgtaa ctcaacgtgt caataacatc aaaatatctt      1860
     tctggaatgc cgccggtgta aagaacaaac taaatgagct caatctgtat ctcttcaagc      1920
     acgatgtaga cataatgtta gtgtctgaga cgcatctgac tgatagcgat agcattgcta      1980
     ttaatggtta tattgtttat atagcaaatc acccctcaaa caggcgcaga ggaggtgcag      2040
     cctttataat taaacagcat atatgccatt atgctatgcg ctttacatct aacgactcgc      2100
     atcaatctgt cgaagtctca gtcagcctac aaaatggccg tcacattaat attgtctcaa      2160
     tctactgccc gccgcaagtt atctggtctg ggcaagattt caacaacctg ctatcttctc      2220
     tgggtgacac ttttatagtc ggtggtgact ggaatgcgaa aagtcagtgg tggggcaacg      2280
     ccagatcttg tctccgtggc cgaacgctag tcaatagtat tctacaagtg aattgcaaca      2340
     ttctggcaac tgggtcgccc acccattttc cgtttaattc acgccaaact ccgtctgcca      2400
     ttgactttgc gctttttaaa ggcatcaggc gagatttgct ggccatcact gactctttcg      2460
     agcttagctc tgatcatctc ccgttgcaag tccagctggt tgagaagcct gtcaccagca      2520
     gagcaaaagg ccacttgcta gatttgaatg ctaacatcaa caaatttcag agctatctaa      2580
     atgacaaaat tttgctcaac actgagatca acagtgcaga cgatattgat gatgcggtga      2640
     atatttttgt ccgaaacatt gaagatgctg caaactatgc gaatgcacag cacccacgca      2700
     aaataacgag gactagattt cgcgtagata gacagactct gcaactcatc gacgcccata      2760
     agcaagtcaa gcgctatctc acacgcaatc gcaatccgat cctcaagatg ctctgcaaca      2820
     ggctgtcgaa tcgcatacgc aaagagctca tatatgctag gcagaagtat gaggaagagc      2880
     tatttagatc tatcgatcca actgatagat atagtatgca gaagctctgg cgactgacca      2940
     acgagatcaa gcggcagcct gccccaaatc taccgctatt gaagtcctcc agcggcaatg      3000
     gctctaatgc gcaaaacgtc tggtgcaaga caactgccga aaaggccgaa acgtttgctg      3060
     caagtcttga gcagcgtttt caacctattg tgactacgcc acccagtgtt ctggctgaaa      3120
     tcgaggctca agttagccag ccatcttcga ctgcttcagt ctcatttcgg ccagtcactg      3180
     cggctgaagt catcagtcac atcagcacgc tagagaacaa aaaagctgct ggattggatc      3240
     aaattgataa tcacactatt aaagcgctgc cattgaaggc cgtgttgtat cttgtgctca      3300
     tttgcaacaa ctcactacga ctgagtcatt tcccctcgag ctggaagcta gctgtggtga      3360
     agatggtgca taagcctggc aagcctacgc accatgttgc atcatacagg ccaataagtc      3420
     tgctgtctgg cctctctaag atacttgagt atctgatttt gagccgtatg ctggagcaag      3480
     atactcttgt aaatgcgatt ccaaatcatc aatttggatt ccgcaaggcg cattcagctg      3540
     agcagcaatt gggtcgcgtt actcaattta ttattaaagc gtttgatgac cgcaaatact      3600
     gctctgctgt ctatatggat atcaaggaag cctttgatcg agtgtggcat acaggcttga      3660
     aatataagct caagatgata ttgccggatg ctctctaccg catcctctgc tgctatttag      3720
     ttgatcggac gtttattgtt gagtgtcacg gtggctgtcg ctcaggtatt aagcaaattc      3780
     acgctggtgt gcctcaaggt agcttgctcg ggcctatctt gtataatata tacaccagcg      3840
     acataccaag gccaactcgc ctacgtggga tattgattgc cacttatgct gacgacgtca      3900
     tcgttctttc ggctgactct cgacaagcag tcgcgctcag tcagcagcag gcgtatatgg      3960
     atagtttggc tgaatgggcg agcaagtggt gcattacaat taatgcaaac aagactatgc      4020
     atatcatgca tacgcttaga gttatagcgc catatcaggc tattcgcatt ggcaacgaaa      4080
     ccattgaaaa tggcacttct cattcatatt tgggtgttac tctagatacg aaactgcgct      4140
     tctcacaaca tgtcactacg gtcgttacta gggtcagggc taggcttaaa aagatagatt      4200
     ggctcattaa caaagatagc aaattgacgc tgagaacaaa agtcattatt tacaaacagc      4260
     tagttgctcc actttggcaa tactcgctgc ctgtatgggg agctctgata tctgaggcgc      4320
     aattcagccg catacgagtc gtacacaaca aagctctgag agccatttct ggtgctcagt      4380
     actttgtttc gaacgcgcgc atcagagctg agttgcaagt cctgtctgcg gatgatatat      4440
     tcaacaatct ctgcgccaaa tactatgatc gactccgggt ccataccaac aacttggcca      4500
     aaaacattgc ctatgacccg ttcatcccac agcggataac attggcaaga tacacgagtc      4560
     tcgtaaacac gcatttggcc aatgacattg ctctacgcac ccagcgacta ctacaacggg      4620
     aggccgatga aatagctgaa agtagggagc gattccttcg ccgacgggag gctcagcaac      4680
     acaacgaagc tgcacaagca gcagcccaac agccgcaacg actacctgtc ttcgagggta      4740
     ttgcgccaat gccgctgcca ctaccaccac catcaccact tgctgcctat agggtcctat      4800
     ttagatcaca tagggatcag tcataaaatt tgcatttaat gcaatttcca atcagctgtc      4860
     ttaacttttt gtaatttaag ctaattttag ctcaagccca tacttgagaa aatgaccaga      4920
     ctttgtctcg acttttctct tttattccaa ttggccactt tgggctactt ttctctgtgc      4980
     atcttgtaga tgcttattaa tgaaataatt gaattatatt aattaatgct atctattact      5040
     attgttaaac ttaaacctta cttatctatt tagtcgttaa tcagttaccc aagcacttta      5100
     ttgttaattt ctattatctt taaattgctc tattataagt attttgtaaa attaagctgc      5160
     actgttattt ttgtgcactt atggccattt aaatttaatc atttaatgat aagtttcgat      5220
     aaatatagtc cttttttaga ttttaattat ctcataggcg ctatttatat tcataagaaa      5280
     tgctattgtg aagtattaat tgaataaaaa gtatctccgt actatcttcc cctcgccatg      5340
     cagctgctgg tcagctgatc atgtatgaga tgcgaagaag cggagatcat caatgtgtgt      5400
     tctcttgtaa catacgaaca gaaacagaaa aaaaa                                 5435
//
ID   Jockey-3_DPer repbase;    DNA;    INV; 8276 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-8276
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1651-1651 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           362..3145
FT                 /product="Jockey-3_DPer_1p"
FT                 /translation="MDALAPNLTTNNMDVMDAMDNSARAEAGGECVTQNSA
FT                 TDIMTRPLGGNPSANASLFEPMFDSEGDADLAELETDSPESTLSSLGATVL
FT                 EFERRFVDRGLYVRKYPPIPPKTDANIQEKPPSNTRTNTQTKIVPSESATG
FT                 SKNSGAFALTKEHLSAHKQNKNKCYAHMFSRQNISENKNKQTTHTSIRESD
FT                 ACALSAAEPLAHNQNGGSSHQAPKRLPPNMHSHTYDKKRDACSLPPNQNTN
FT                 TYKNEASLTYANNKTQTNTHTSRSRKCLLPTLTQADEHNTQTRPSTRTQLV
FT                 KEWLISVPPLLANEMPSPLPXTPIAKDKLTTNSFRSPLKRRCAAIETDTXD
FT                 DDFTCLTLDTPMFKSQFAKRLHHETRQMESDAGQIRXPSNSVVPVPEAQHR
FT                 EPQRIEAESQQMETDNHQPQHQPXISINITPVQXSLRSTKVPTIFLPLVPA
FT                 ILPLINKLTTNPNVGKFTTKSMANSGLRVHCDDIITYNAIQNALAEDSTQL
FT                 HTHQPRSERGYRVIVRHLHHTTPSSWIXEELERLGFTARFIRGLKHRFNGR
FT                 PLNIFEVEIQPKADGGHEAILDIKNLANQCVSIVRQAKPRDPAQCHRCQEF
FT                 GHTKNYCRRPYKCMKCAGDHPTTACRKPRQEDPKCANCSGKHVSCYKGCAA
FT                 YKKARSQLRANRLIGEQQYQQQRQQPQQQTEQQRPQQKHNKHQRTQQQQQH
FT                 HQQQSQQTQRQGRQQQQQQPATISGSGRPSYSRVVRSGTTEQEQQQQQQQP
FT                 RADNHQQQHRRPQQQQQPYVRTVEQQQPSQRKRPQQQQHQRQQRARVVQGA
FT                 KAAPAPTPIAAATPNTRRPLYSRGAQANPAENHLAKFQQKLRDEQQQHHHQ
FT                 QQQEQQKTLPANFQSHAHKENAEFLSRLEAKIDSLFSAIVKLININTNKTS
FT                 KTTNSSSPNSLDMALSSANDAFYV"
FT   CDS           3129..7547
FT                 /product="Jockey-3_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMPFMFSPVPNGLSNQKVNPVQTISTHSVSQNGNTFK
FT                 IAFWNACGVTNKLNEVEVFLKREKIQLMMVIETRTRAVSVSGFHTYTAQNP
FT                 ANDRRGGVAILVRDDVTHSALQPISKPFIQSAPVIVFTEKENKKGIIFAPI
FT                 YCPPVFKWAPAHFTGLIRHFEELCVEETASGFLVCGDWNAKHMWWGNARGC
FT                 ARGKALMEAVHTNNGCNLLATGGATHYPYDKKKRPSAIDFGIYKGINDTHL
FT                 SIRSSSDLDSDHLLLRVELTIGSGGRRHPTPTVRKHLLPARANISLFQKSL
FT                 ERLINLNTEIRIAQDIDDVVYLFLNNIRVAAAAATTQHQQQHPNTHRRWPQ
FT                 QRQHHHQQRSQQHHRHHHLKLDEATSELLSIKQQCKRIWLATRTIEARRNY
FT                 RAAQNRLNKGLTILKNKNINKLFTGIDNKDRYQMQKLWKLTSTIKRQPQPN
FT                 WPLRLPTMTGGKASVSWTKSTAETADAFATHLEERFSPILSNSDEERAAIN
FT                 REREQSKRQKQLQPDQETRIPFRPVTLPELMQIVDALELSKSPGGDKINNK
FT                 LIKNLPKKALLYLILIYNSIFRLGHFPSQWKHAQIKMILKPGKNTADMCSY
FT                 RPISLLSGLSKIFEKLLMARLFEVENFAKAVPNYQFGFRREHGTEQQLARV
FT                 TQYILKAYEKKQVCSAIFLDISEAFDRVWHEGLLYKLMKLLPLNLYCILES
FT                 YLAERTFRVSCGDEELSRIGKISAGVPQGSVLGPILYTIYASDMPMPHLIP
FT                 DSTGFHPERESMLLSTYADDTVIMSASAIPNVAVKYNQRYLTHFSIWAKKW
FT                 CININAKKTGHVIFTLRTIRSTDLRQTPTINGQAVPLAKSHTYLGIKLDKK
FT                 LTLSSHITRICTKLRSRAAKLDWLAGPKSRLPSETKAIVIKQLIMPIWQYG
FT                 LPVWGALTSDSQLRRVQSLQNKIIRRAMKATRFTRNDAIRQTHNLDTIDEV
FT                 FHAASGRFANSLACHVNPEARKLLLQPYEPQRLQRPRYLQQLLQHFRPLQP
FT                 QNQDRSSHHHQHPDPAISEESLPTLVRLEEEELKRKRQEESDARQLRRIQQ
FT                 QNIINPNPERFNESMINCFRKRYLSGQTPRERIVALIFGQPLSVQRIILPD
FT                 YEGDPDPATQQQTQQQTQQQTQQQTQQQMQQQTQQRTQQQTQQRTQQQTQQ
FT                 QMQQQTQQRTQQQTRQILASSNRQTSHHRCQTRAASSSSRTLDDSHRRNPQ
FT                 EALLDHGLEQVRRRLERVVDDDDDDDVQIISDDDDDDVQIITDVQSISDDD
FT                 DHNNDDDAGRHIAHTATVTPHFGAARRRSLGRRNPAAASPMFLWWTLSLYL
FT                 VNVKMTLKFAKLSPPQSNIKRHKTHLKRVQTRLRHRATPLVAPLILSHGRH
FT                 HGIRPPEGLRGRESSRLLVGYECQFGHACAAHMAHPNPRRGGFPALHGCWQ
FT                 PSPHKSGRIPGHLEDHGDRSIHSARRCALSTSPAAPYTRAHPAPYGCAPCQ
FT                 TLCSRRRR"
XX
SQ   Sequence 8276 BP; 2594 A; 2178 C; 1901 G; 1589 T; 14 other;
     aagcttaaat gtaaattgcc gaagttatgg taataggaaa agctggaaat aaactccgcc        60
     agtagcaaag ctggcgggcg agtgtgcgca tcgtaggcgt gcacgcgcat ctaattacat       120
     cgaaaaaaaa aagtgacttg tgttttttgt tgttttatgt ggaactttaa atgtattaaa       180
     atacatgttt aaaccgggac taaattaaat ggaaactaaa taaacaatat gtgccaaata       240
     attgcaaata atgcaatata atcatctgtg atcgtgcctt aattcagtga agccaataaa       300
     cccaactgga ggaaagagga aggaaaagca aagctactga gtacctggac caggccacca       360
     aatggacgca cttgctccaa atctgacgac caataatatg gatgttatgg atgctatgga       420
     caactcggca agagccgaag cgggtggtga gtgcgttact caaaatagtg ctaccgatat       480
     aatgaccagg cccctgggag ggaacccctc cgcaaatgct tccctcttcg aaccaatgtt       540
     cgactcagag ggggatgcgg atctggctga gttggagacg gactcgccag agagtaccct       600
     gagctccttg ggagctacgg tgctggagtt cgagcgtcgt ttcgtggaca ggggtttata       660
     tgttagaaaa tacccgccaa tcccaccaaa aacagacgcc aacatacaag aaaaaccgcc       720
     atcaaataca cgtacaaaca cgcagacaaa aatagttccc agcgaaagtg caacgggttc       780
     caaaaatagc ggcgctttcg ctcttaccaa agagcattta agtgcacata aacaaaacaa       840
     gaacaaatgt tatgcccata tgttttcgcg ccaaaacatt agcgaaaaca aaaacaagca       900
     aacaactcac acaagcatca gagagagcga cgcttgcgct ctctcggcag ccgaaccctt       960
     ggcgcacaat caaaacggag gctcgtcaca tcaagcccca aagcgtttgc cgccaaacat      1020
     gcactcacac acttatgaca aaaagagaga tgcttgctct ctcccgccga accaaaacac      1080
     aaacacatac aagaacgaag ctagcctgac ctacgccaat aacaaaacac aaacaaacac      1140
     acatactagc agaagcagaa aatgcttgct gcctactctg actcaggcgg acgagcataa      1200
     cacncagaca aggcctagta ccagaacaca actggtaaag gaatggctaa ttagcgttcc      1260
     cccgctactg gccaatgaaa tgccctcgcc cctgcccmtt acccctatag caaaggataa      1320
     attgactaca aattcgtttc gctcgccgct caaaagaaga tgcgcggcga tcgaaacgga      1380
     tacagangac gatgacttca cctgcctcac tctggacacg cccatgttca agagccaatt      1440
     cgcgaaaagg ctgcatcatg agacccggca gatggagtca gatgctgggc aaatacgcnc      1500
     accgtcaaat agtgtggttc cggttccgga ggcccaacat agggagcccc aaaggataga      1560
     ggctgaaagc caacagatgg agacggacaa ccatcagccg caacatcagc cagmcattag      1620
     tataaatata acgccmgtcc aacmgtcatt acgcagcacc aaggtcccaa caatcttcct      1680
     gcccctggtg cctgcaattt tacccctgat taacaaattg acaacaaatc cgaacgtggg      1740
     gaaattcacg acgaaatcga tggccaacag tggactcaga gtccactgcg acgacattat      1800
     aacatacaac gccattcaga acgccctagc tgaagacagc acccaactgc acacacacca      1860
     gccgcgcagt gaaaggggct atcgtgtaat agtgcgacac ttacaccaca ccacgcccag      1920
     cagctggatm nckgaggagc ttgaacgact cggatttact gcsmggttta tccgaggatt      1980
     aaaacaccgt tttaatggga ggcctctaaa catttttgag gttgaaattc agcccaaggc      2040
     ggatggcggc catgaggcaa ttctggacat taaaaacctg gccaatcaat gcgtctccat      2100
     agtgagacaa gccaagccac gcgatccagc ccagtgccat cggtgccagg agtttgggca      2160
     tacnaaaaac tactgcagac ggccatacaa gtgcatgaaa tgcgcaggag atcaccccac      2220
     aacagcatgc aggaaaccca ggcaggagga tcccaaatgc gccaattgta gcggcaagca      2280
     cgtgagctgc tacaagggat gtgccgccta caaaaaggct cgcagccagt taagggcaaa      2340
     ccggctcatc ggtgagcagc aatatcaaca gcaacgccag cagccacagc agcaaaccga      2400
     gcagcaacgc ccacaacaga aacacaacaa acaccagcgt acgcagcagc agcagcagca      2460
     tcatcagcag cagtcacagc agacgcaacg acagggccgc caacaacaac aacagcagcc      2520
     agcaacaatc agcggcagcg gcaggccgtc gtacagccgg gtagtacgta gcggaactac      2580
     tgagcaggag cagcagcagc agcagcaaca gccacgagcg gacaatcacc aacagcagca      2640
     tcgccgacca cagcaacagc agcagccata tgtccgtact gttgagcagc aacagccatc      2700
     acaaaggaag cggccacagc agcagcagca tcagcggcag cagcgcgcaa gagttgtaca      2760
     aggggccaaa gcagcaccag caccaactcc aatagcagca gcaacgccca acacccgcag      2820
     gcccttgtat agccgaggtg ctcaagccaa tccggccgaa aatcatttgg ccaagtttca      2880
     acagaagttg agggatgagc agcagcagca ccaccaccag cagcaacaag aacagcaaaa      2940
     aactctcccc gcaaatttcc agtcccatgc ccataaagaa aatgcagaat ttctctcaag      3000
     acttgaggcc aaaatcgata gtctattttc tgcaatagtc aaattaataa acatcaatac      3060
     aaataagaca agcaaaacaa caaatagcag ttcaccaaac tctttggaca tggccctgtc      3120
     ctccgccaat gatgcctttt atgtttagtc cagtcccgaa tggcctgtca aaccaaaaag      3180
     tcaatccagt acagactatt tccacccaca gcgtcagcca gaacggcaac acttttaaaa      3240
     ttgccttctg gaacgcgtgt ggtgtgacaa acaagttgaa cgaggtcgaa gttttcctga      3300
     aaagggaaaa aatacaatta atgatggtca tcgaaacacg cacaagggcc gtctctgtga      3360
     gcggattcca cacttacact gcacaaaatc cggcaaacga tcgcagaggg ggagtagcca      3420
     tcctggtccg ggacgatgtc acccactctg ctctgcagcc aatttcaaag ccattcatcc      3480
     agagtgcacc tgtcatcgtc ttcactgaaa aggaaaataa aaagggaatt atttttgcgc      3540
     cgatctactg tccgcctgta ttcaagtggg cgcctgccca ttttactgga ttgataagac      3600
     attttgaaga actctgcgtc gaagaaacag catccggctt ccttgtatgc ggtgactgga      3660
     acgcgaagca tatgtggtgg ggaaatgccc gtggatgcgc cagagggaaa gcactgatgg      3720
     aggctgtaca caccaacaac ggctgcaatt tgctggccac cggtggtgcc acacactatc      3780
     cctacgacaa aaaaaagaga ccatcagcga ttgactttgg aatctacaaa ggaatcaacg      3840
     acactcacct gagtatccgt tcaagctcgg atttggactc tgatcacttg ctgctcaggg      3900
     tggagttgac gatcggcagc ggtggacgta gacatcctac gcccacagtc aggaaacatc      3960
     tgctcccagc acgtgccaat atcagcctgt tccaaaagtc gctggaacgg ttgatcaatc      4020
     tcaacaccga gattaggata gcgcaggaca ttgatgacgt cgtttacttg tttttgaaca      4080
     atatacgggt agcagcagca gcagcaacaa cacaacacca acagcagcat ccaaacactc      4140
     atcgaagatg gccacagcag cgtcagcatc atcatcagca gcggtcacag caacatcacc      4200
     ggcaccatca cctcaagctg gacgaggcta caagcgagct gctctccatc aaacagcagt      4260
     gcaagaggat ctggctggcg acccgcacca tcgaagccag acgaaactac agggcggcgc      4320
     aaaatcgtct taacaagggg ctcacaatcc tgaaaaacaa aaacatcaac aaactgttca      4380
     cagggattga caacaaagac cgctatcaaa tgcagaaact ttggaaactg accagcacaa      4440
     tcaaaagaca gccgcagcca aactggccac tgaggctgcc aactatgact ggaggcaagg      4500
     caagtgtctc gtggacaaag tcaacagccg agacagccga tgcctttgct actcacctgg      4560
     aggagagatt cagcccgata ctgtccaatt cagatgaaga gcgggccgca atcaacagag      4620
     agcgtgagca gtcaaaacgg cagaagcagc tacaaccgga ccaggaaacc aggattccct      4680
     tcagaccagt cacactgcct gagctgatgc agattgtgga tgcattggag ctgtccaaat      4740
     cacctggggg agacaaaatc aataacaaac tgattaaaaa tttgccaaaa aaagcgctat      4800
     tatatttaat actaatatat aactccattt tcaggctggg ccactttcca agtcagtgga      4860
     aacatgccca gattaaaatg attttaaagc cgggcaaaaa cacagcagac atgtgttcct      4920
     accggccaat cagtctatta tctggccttt caaagatctt tgaaaaattg ctgatggcga      4980
     gactgtttga ggtggagaat tttgccaagg ccgtacccaa ttaccaattt ggatttcggc      5040
     gggagcatgg cactgaacag cagctggctc gagtcactca atacatcctc aaggcgtatg      5100
     agaaaaaaca agtttgctcg gcaattttcc tggacatttc cgaagctttt gaccgagtat      5160
     ggcatgaagg gctgctgtac aagttgatga agctgctgcc tttaaatttg tactgcattc      5220
     tggagagcta cctggctgaa cgcacttttc gtgtgagctg cggagacgag gaactttcaa      5280
     gaatcgggaa aatatcagct ggagtcccac agggcagtgt wcttgggcca atactataca      5340
     caatctatgc ctcggacatg ccaatgcctc acctcatccc ggacagcact ggcttccatc      5400
     cagaacggga atcaatgctg ctgtccacgt atgccgacga cacggtgata atgagcgcat      5460
     ctgcaatccc aaatgtggca gtcaaatata accaaagata cctgactcac ttctctatat      5520
     gggccaagaa gtggtgcatt aacataaatg cgaaaaaaac cggacatgta atattcacac      5580
     tgaggacaat tagatcaacg gacttaaggc aaacgccgac tataaatgga caggctgtgc      5640
     cacttgccaa atcacacaca tatctgggca taaaattgga caaaaaactc accctaagct      5700
     cacacatcac gaggatctgc acaaaactcc gatcaagagc ggccaaactg gactggcttg      5760
     ctggcccaaa aagccggctg ccaagcgaaa ccaaggctat agtcatcaag cagctcatca      5820
     tgcccatttg gcaatatggt cttccggttt ggggcgcact tacatccgat tcccagctgc      5880
     gacgggtgca aagcctacaa aataaaatta ttagacgggc aatgaaggcg acaaggttca      5940
     ccaggaacga tgcgataaga cagactcaca atctagacac aatcgacgaa gtgttccatg      6000
     cggcaagtgg gcgcttcgcc aactccttgg cttgccatgt caatccggag gctcggaaac      6060
     tattactgca gccgtatgaa ccacagcgat tgcagaggcc acgttatctg caacagctgc      6120
     tccaacactt ccgcccgctg cagcctcaaa atcaggatcg gagcagccat catcatcaac      6180
     atccagatcc ggccatctcc gaggaatcgc ttccaacgct ggtccgtctc gaagaggagg      6240
     agctgaaaag aaagagacag gaggaatcag acgccaggca attaagaaga atccaacaac      6300
     aaaatatcat caatccgaac cccgaaaggt tcaacgaatc gatgataaat tgcttcagaa      6360
     aacgatacct cagcggccaa actccccgag aaagaatagt ggctcttatc tttggccagc      6420
     cactttctgt ccaaaggata atcctgccag attacgaggg ggatcccgat ccagcgacgc      6480
     agcagcagac gcagcagcag actcagcagc agacgcagca gcagactcag cagcagatgc      6540
     agcagcagac gcagcagcgg acccagcagc agacgcagca gcggactcag cagcagacac      6600
     aacaacagat gcagcagcag acgcagcagc ggactcagca gcagacacgg caaattctgg      6660
     cgagcagcaa ccggcagacg tcacatcatc gttgccagac acgggctgca agcagcagct      6720
     cacgcaccct ggacgacagc catcgacgca atccgcaaga ggcacttctg gaccacggac      6780
     tggagcaagt ccgacggcgc cttgaacggg tggtcgacga cgacgacgac gacgacgtcc      6840
     aaatcatctc agatgacgac gacgacgacg tccaaatcat caccgatgtc caatccatct      6900
     cagatgacga tgaccacaac aacgacgatg atgccggccg gcacattgcg cacaccgcca      6960
     cagtgactcc gcactttggt gcagcaaggc gccgctcact gggacgccgc aatccggccg      7020
     cagcaagtcc aatgttcctg tggtggacat tgtcgttgta cctggtaaat gtaaaaatga      7080
     cattaaaatt tgcaaaatta tcccctccac agagtaatat aaaacggcac aaaactcacc      7140
     tgaagcgtgt acaaacacgc ttgcgacacc gggcgacacc cctagttgct cctctgatcc      7200
     tttctcatgg gcgtcaccac ggcatccggc ctccagaagg gctccgcgga cgagagtcat      7260
     cacggctgct ggttggctat gaatgccaat ttggacacgc ttgcgctgca cacatggcgc      7320
     atccgaatcc acgcaggggt ggttttcctg cacttcatgg ctgctggcaa ccatcgccac      7380
     acaaatctgg ccgaatcccg ggccacctgg aggaccacgg cgatcgctcc atccactctg      7440
     cacggcgctg tgcattgtcc acgtctcctg ccgcacctta cacacgcgct catccagcgc      7500
     cgtacggttg cgcaccgtgc caaacactct gctccagacg acgacgatga tccagtacct      7560
     gcaaatagaa ataaaataga attaaattag attaaaatgt aaacaattgt tcaaatattg      7620
     tcaatactta tctgtttgtg accacctgct gatttatgta cgttaatcct gtgattgaca      7680
     cataagggct gccagaccat tagtttcatg ttttaatgtt aatgttaatg taatgctaat      7740
     gtaatgctaa tgttaatgtt aacagcccgc caattttaaa aatcacatca ttgttgttag      7800
     ttaagcttaa atgtaaattg ccgaagttat ggtaataaga aaagctggaa ataaactccg      7860
     ccagtagcaa agctggcggg cgagtgtgcg catcgtaggc gtgcacgcgc atctaattac      7920
     atcgaaaaaa aaaagtgact tgtgtttttt gttgttttat gtggaacttt aaatgttttt      7980
     aaatacatgt ttcaaccggg actaaattaa atggaaacta aataaacaat atgtgccaaa      8040
     taattgcaaa taatgcaata taatcatctg tgatcgtgcc gtaattcagt gaagccaata      8100
     aacccaactg gaagaactga aagaggaagg aaaagcaaag ctactgagta cctggaccag      8160
     gccaccaaat ggacgcactt gctccaaatc tgacgaccaa taatatggat gttatggatg      8220
     atatggacaa ctcggcaaga gccgaagcgg gtggtgagtg cgttactcaa ataagt          8276
//
ID   Jockey-3_DRh repbase;    DNA;    INV; 4739 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4739
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1681-1681 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..1927
FT                 /product="Jockey-3_DRh_1p"
FT                 /translation="MSLNDVRTQRQREQDERRLSVQRNNAYFSFKATENNA
FT                 SSDQARAITPNLTEFLNVASERARSCSPSLPSTSLRPKSAECAPMQVCNNL
FT                 SSSAVTSTAISLTTSTVTTTTTATVSTARLMTSSASSANINTSAAALPEKQ
FT                 NKTNECAKPAVQTGMDRYIQIKRKLSPLNSQRKITRNNASLAGIETPMNSN
FT                 RFKILEDAYDVEAAESTEVEKRKPKPPPIYIREKSSNVLVNKIIELIGKDN
FT                 FHIIPLVKGNIQETKVQMKSEDNYRVLSKYLSENKKNFYTYQLKSSKGLQV
FT                 VLKGIESDVTPAEITKALQEKGFNAKTVFNILNRDRKPQPLFKVELEPENK
FT                 PLKKYEVHPIYNLQFLLHRRITVEEPHKRNGPVQCANCQEYGHTRSYCKLR
FT                 PVCVVCGDLHDSAHCPASKDDCNSKKCGNCGGNHTANYRGCPVYKELKSRI
FT                 HQRGTAARTQNKQMTASRSNPEVFFSTAARSSLGPLNSDKNVTYASALKSG
FT                 LANPVSKSSFLQSAYQEPNTAQQQQFPEQSKSNFEDMIYSLQQSLTEFMSF
FT                 MRTTMQDLMRNQNLLIQMLVSQQSK"
FT   CDS           1930..4602
FT                 /product="Jockey-3_DRh_2p"
FT                 /translation="MTSLRISTWNANGVSQHKLELAQFLLDNHIDVMLLSE
FT                 THLTNKYNFQLRGYSFYGTNHPDGKAHGGTGILIRSRIKHHYHNKFAKNYL
FT                 QATSINIQINTGNQLTLAAVYCPPRFTIAEDEFMQFFNSLGDHFIAAGDYN
FT                 AKHTHWGSRLVTPKGKQLYNAVIKAKNKLDYVSPGRPTYWPADPRKLPDLI
FT                 DFAITKNIPKNLISAECLSDLSSDHSPVLFILLRHPGALEQSFKLTSQKTN
FT                 WVKYKKYISSHIELSPHLNDEANVDRFVNTLESVLVSAARVSTPQTTSTQS
FT                 NQKKTNLQIEQLVLEKRRLRREWQLHRSPSARQSLKYASRQLTKALQQEEA
FT                 HVHRRYIEQLSTSSTKHSLWRAHPTLSSPKVTVMPIRNPTGGWARSDADRA
FT                 STFANHLKNVFQPNPATSAFTLPTLPYEPQLQHEPIEFRPNEIVNIIKNQL
FT                 NPKKSPGCDLITPKMIIELPYCAVCTITQLFNAIAKLGHFPVRWKKSIIIM
FT                 IAKPGKDHTIPTSYRPISLLSCLSKLFEKCVLTRINTYLRIQEGIPSHQFG
FT                 FREKHGTIEQVNRITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKI
FT                 KTMLPYNTHKLLESYLYDRKFAVRCNTAITDDFTIGAGVPQGSVLGPTLYV
FT                 LYTADIPTSTRLTTSTFADDTAILSRSKCPMQATAQLALHLVDVEKWLSDW
FT                 RIKVNEQKCKHVTFTLNRQNCPPLMLNHTLLPQANEVTYLGVHLDRRLTWR
FT                 RHIEAKRTHLKLKASSLHWLINARSPLSLEYKVLLYNSVLKPIWMYGSQLW
FT                 GNASNSNIDIVQRAQSKILRTITGAPWYVRNENIHRDLNILPVKEVIAEQK
FT                 EKYFTKLSLHPNHLARGLTRLINQSRLRRNDLPTQRPT"
XX
SQ   Sequence 4739 BP; 1588 A; 1182 C; 894 G; 1075 T; 0 other;
     ttaaaccgtc gtcgcatgca gacgtgtatt tattgtgctc cgggaaaaag tattcaataa        60
     aatcacaaaa gtgcagtgac cgttttaata aatctactat aacgcgaaaa gacgctttct       120
     gcgatgaaat cgcgaatgtt tatattgatt ggtcatttaa ttaatataaa acttaacact       180
     taaaactcta attaacttta ccacgaatac aatgagtctg aacgacgttc gcacacaacg       240
     tcaacgtgag caagacgaga gacggctctc agtacaaaga aataacgcgt acttctcttt       300
     taaagcaacc gaaaataatg caagctctga tcaagcgcgg gcaattaccc ccaacttgac       360
     cgagttctta aacgtagcga gcgagagagc gcgttcttgc tccccctcgc taccatcgac       420
     gtctctgcgg ccaaagagcg ctgaatgtgc tccaatgcag gtatgcaata acctaagctc       480
     atcagcagta actagcaccg caatttcttt aacaacgtca actgtaacta caacaacaac       540
     tgcaaccgta tcgactgcgc gtttaatgac atcatcagct agcagcgcaa atattaatac       600
     gtctgccgct gcgctgcccg aaaaacagaa caaaaccaat gaatgtgcta agccggctgt       660
     gcagactggt atggatcgct acatccaaat caaaaggaag ctgagccctc taaattctca       720
     acgcaaaata acccgtaaca atgctagcct agctggaata gaaacgccca tgaactcaaa       780
     ccgatttaaa atcttggaag acgcctatga cgttgaggcg gccgaatcca ctgaagtcga       840
     gaaaaggaag ccaaaacctc cgcctattta tattcgagaa aaaagttcca atgttcttgt       900
     caacaaaatt atcgagctta ttggaaagga taacttccac ataatacctc tagtaaaggg       960
     caacatccag gaaacaaagg ttcaaatgaa gtctgaagat aattacagag tattatcgaa      1020
     atatctttcc gagaataaaa agaactttta cacgtatcag ctaaaaagta gcaagggcct      1080
     gcaagtcgta cttaagggca tagagtccga cgtaacgcct gcagagataa caaaggcgct      1140
     tcaagagaag ggatttaacg ctaagacagt cttcaacatc cttaacaggg atagaaagcc      1200
     gcagccactc tttaaggttg agctcgaacc agaaaataag cccctaaaga aatacgaagt      1260
     gcaccccatt tacaatcttc agttcctgct gcaccgcaga attacagttg aggaaccgca      1320
     caaacgcaat ggcccggtac aatgtgcgaa ctgccaagaa tatggccata caaggtcata      1380
     ctgtaaactg cgcccggtgt gtgtagtttg tggagatctt catgactccg cacactgccc      1440
     agcgagcaaa gatgactgca actcgaaaaa gtgcggcaac tgcggtggca atcacactgc      1500
     taactacaga ggctgccctg tttataagga gctgaaaagt cgcatccacc agagaggaac      1560
     tgccgcccgc acccaaaata aacagatgac agcttccaga tcaaaccctg aagtcttctt      1620
     ctcgactgca gccagatcct cactaggacc cttaaactct gataaaaatg tgacttacgc      1680
     aagcgcttta aaatcaggac tggctaaccc tgtctcaaaa agttcatttc tgcaatcagc      1740
     ataccaagaa ccgaacacgg ctcagcagca acaattcccg gagcagtcaa aaagcaactt      1800
     tgaagatatg atatacagcc tgcagcaaag ccttacggag tttatgtcgt ttatgcgcac      1860
     aactatgcaa gatttaatgc gaaaccaaaa tctattgatt caaatgctgg tttcacaaca      1920
     atccaaataa tgacttccct aaggatatct acgtggaacg ctaacggcgt ctcacagcat      1980
     aaacttgagt tagctcaatt cctactcgac aaccatatcg acgtaatgct gctttcagaa      2040
     acacacctta caaacaaata caattttcaa ctacgaggtt attcattcta cggaacaaat      2100
     catccagatg gtaaagcaca tggtgggact ggaattctaa tcagaagccg tattaagcac      2160
     cactatcata acaaatttgc taaaaattac ctacaggcca catctataaa tatacaaata      2220
     aatactggca accaacttac actagccgcc gtatactgcc cccctcgctt caccatagct      2280
     gaagatgagt ttatgcagtt tttcaactca ctaggagacc acttcatagc agcaggggac      2340
     tacaacgcca agcacacaca ctggggatca cgtctcgtga ctccaaaagg aaaacagctc      2400
     tataatgcag ttataaaagc caagaacaag ctggactatg tttctcctgg cagaccaaca      2460
     tactggccgg cagacccaag gaaactaccc gatttaatag actttgcaat taccaaaaac      2520
     attcctaaaa atctgataag cgccgaatgc ctctcggatc tttcatcgga tcactcgcct      2580
     gtcctgttta ttctactccg acatccaggc gcattggagc aatcgtttaa attgacatca      2640
     cagaaaacca attgggttaa gtacaagaaa tacattagct cacacattga gctaagtcct      2700
     catctcaacg atgaagccaa cgtagacaga tttgttaata cactggagtc tgtactcgtc      2760
     tctgcagctc gagtttcaac accccaaact acaagtacgc aaagcaacca aaagaagaca      2820
     aatctacaaa tagaacagct cgtcctcgaa aagcgacgct tacgtcgaga gtggcaactc      2880
     cacagatcgc catctgctag gcaaagctta aaatatgcct cacgtcaact cacaaaagct      2940
     ttacagcaag aagaagcaca tgtccaccga cgctacatag agcaattgtc aacatctagt      3000
     acaaaacact cactatggag agctcaccct actctaagct caccgaaagt aaccgtgatg      3060
     cctattagaa atcccacagg cggctgggcg cgcagcgatg cagacagagc cagcacgttt      3120
     gccaaccacc ttaaaaatgt cttccaacca aatcctgcca ctagtgcgtt caccttgccg      3180
     actttaccat atgagcctca gcttcaacat gagccaattg agtttcgccc aaacgaaatc      3240
     gttaacatca tcaaaaatca gctgaatccg aaaaaatccc cgggctgcga cctcataact      3300
     cccaaaatga tcattgagct cccatattgc gccgtttgca ctatcaccca gctttttaat      3360
     gccatcgcaa aacttggcca ctttccagtg agatggaaaa agtcgattat aataatgata      3420
     gcaaagccgg gaaaagacca cacaattccc acgtcgtata gacctataag cctactctca      3480
     tgcttatcta aactctttga aaaatgcgta ttgactcgga taaacacata cctaagaatc      3540
     caggaaggaa ttccgtcaca tcaatttggg tttcgtgaaa agcacggaac aattgagcag      3600
     gtcaaccgga taacatcaga aattcggaac gcgttcgaaa aacgagagta ctgtactgcc      3660
     atatttttag acgtctctca agcatttgat agagtttggc tagaaggtct aatgtacaag      3720
     atcaagacaa tgctccccta caacacccat aagcttttag agtcttacct ctacgacaga      3780
     aaatttgctg ttcgatgcaa cactgctata actgacgatt tcactattgg agctggagtt      3840
     cctcaaggaa gcgtgctcgg gccaacatta tatgtcctct acacagcaga catcccaaca      3900
     agcacacgac taacaacatc tacgtttgct gatgatacag ccattctcag ccgctcaaaa      3960
     tgcccgatgc aagcaactgc gcagctagct cttcatctgg tcgatgttga aaagtggcta      4020
     tcagattggc gaattaaagt gaacgaacaa aaatgcaagc acgttacgtt caccctgaac      4080
     aggcaaaact gcccgccgct catgttaaac catactctac tcccgcaagc aaacgaagtg      4140
     acatatctag gagtacacct cgacagaaga ctcacatggc gccggcacat tgaagccaaa      4200
     agaacacacc taaagctaaa agccagtagc cttcattggc ttatcaacgc tcggtctccc      4260
     cttagtcttg aatataaagt cctgctgtat aactcggtac taaaacctat atggatgtac      4320
     ggctctcagt tatgggggaa tgccagcaat agcaatattg acatagtcca gcgagctcag      4380
     tcgaagatct tgagaacaat caccggggca ccgtggtacg ttcgcaacga aaacatacat      4440
     cgcgacttaa acattctacc agtcaaagaa gtgatcgcag aacagaagga aaagtacttt      4500
     accaagctat cgttgcaccc taaccacctg gcgagaggtc ttacaaggtt gatcaaccaa      4560
     tcacgccttc gtcgcaatga cttacccacc cagcgaccga cttgaggcac gcgcaaccag      4620
     aatgcagtct tattatactg ttagttaaat tttaatgtta agattcgtaa acttattgtt      4680
     agtctcaaaa ttaagagaag attcaataaa taaaagcaaa gttaaataaa aaaaaaaaa       4739
//
ID   Jockey-3_DSim repbase;    DNA;    INV; 4943 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit fly, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4943
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1652-1652 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. It is ~94% identical to G2_DM, but
CC   is longer.
XX
FH   Key           Location/Qualifiers
FT   CDS           1255..2154
FT                 /product="Jockey-3_DSim_1p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MLKMITTLVGPSKDFSYKSERNNNVRVMMPDKESYTE
FT                 LRQQLVAQNKRHRTFQPRDERAYRVVIKGLHTADRAEIQEELEKLGHKVRD
FT                 LHNPIGRKTKEPLGIFFANLEPASNNKEVYQIRRLCRSVVTIEPPLKFNDV
FT                 PQSFRCQGFGHAQRYCFLEHRCVKCGGHHDTRTCTKKENEKACCLHCQADH
FT                 PASFRGCPAYKKAKAQQAPKPRPATSISKPCTTKLPSISNMSYKDALMSTQ
FT                 VPQQTNPNLTHQTPPEAPQPSNMEQMFARFEGMVKMMMENMFSQMTQLVAS
FT                 ILNAKVCK"
FT   CDS           2148..4145
FT                 /product="Jockey-3_DSim_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQISLTIVVWNANGLQKSRAEVEHLLKTDAIDVLLVS
FT                 ETHFCPRSHFSISGFDVIPANHPSGRARGGAAMLIRSGIQHTKLPAFQEEW
FT                 AQCALARISSQDGDVTVGAVYFPPRHSITETHLQVFFESFGPRFIVAGDFN
FT                 AKHSWWGSRSINPNGRTLHRILQSRRLDCHSSGEPTHWPTNPALLPDLLDF
FT                 AISKGIGQARLTCSNYNKLLSDHSAIKMLLNIPVLKKELPRRLTGKHTDAS
FT                 KFTLWMLSSLHPDPPLFTPSNIDAAIKTLTEEMHNAAEFANPAPPTTPRTP
FT                 GRDLHLWSPEIATFVAEKRRLRRIWFSSRNPRDKAALNRATKAIKDKLCTL
FT                 RQDSFDRFLEELEPGDPQHNLWHVTRHIRRPAKKASPVRKADGSWCRSEAE
FT                 RAEAFADHLQIAFTPFDRCTGEECAATTRFLESPCPPSLPIEPVTPEEVAQ
FT                 EIASLKASKSPGLDRIDATSLKMLPPPCSHLLANIYNRCFSLGYFPRSWKR
FT                 AEVILILKPGKPEANLASYRPISLLAILSKILERVFLRRVLPVLDEAGLIP
FT                 DHQFGFRRSHGTPEQCHRLVARILDAFENKSYCSAVFLDVKQAFDRVWHPG
FT                 LLYKLKSHLPSSHYALLKSYTEGREFQVRCGSSTSTPRPIRAGVPLHPIYS
FT                 NPPYHTLPLPHSSHLCR"
XX
SQ   Sequence 4943 BP; 1442 A; 1359 C; 1042 G; 1088 T; 12 other;
     atctattagc aattgtttta aatttcatgt tgctagttaa ttaccgctaa ttaatatgaa        60
     atattttttg attttgatcg tcgattatca aaacaacata agaacttatt ttaaaaatat       120
     awcgagttat ttagatacga acctcttatt ctwtggtcct tgawttacga catcctttgt       180
     tctaatttta catccgmgca gcwcctkaaa ctacatcgca ggtcatctag cttattggct       240
     cccagagggt acatgaaatt aaaacaaaac cattacaagt ttagtgttat ttgtaaacac       300
     aatgggcata agttttaatt agcattaacg atgacgtggc caagaataga actgacttaa       360
     tatcaaasat caattatgaa taccatctct ggtacgtaga tttcmtatga attggaattt       420
     tatttaaaaa attcgatatt gtcaatattt tcctatgaag tgaaattttg tgttcacctt       480
     agcgtctgcg atcgaacact cgttgagtgc agacgtgcct acggacgagc gcaccgtgtt       540
     gtgtattttc ggagtgtttt tcgctgtgaa aaatktaacc agaactcata aaaacgtaca       600
     gacaattagg ccaagtccta gagtgcgtgt gattactgat agcaagttta tgtgatgtgt       660
     ttttgagctg caaattgaaa cttatttata tgcaaaagtg aaaacatata cacgtggtca       720
     accaatcagt gttaccagtc gacggctaag tcaactgccc gaaaagctct tcaagtggtg       780
     tgtgtcttgg ctgaactggt tccgataact tgaaccagta tcgacatagg tggcgccgct       840
     gccgcaatag tttaaaattc ctccgccaga gggtgtcaac cagttccgta aagctccaac       900
     agttggcgct tcaggctgca cctttattat ggactggcaa acagtgcata ttgcgactag       960
     caacaaacgc aagaaaaagg agaaaaataa ctctttggac tccgacgatt cacccgagcc      1020
     aggcgaggta agaaggaaga atccggtcaa acattctcat ccaatagacg gaccgagcac      1080
     aagcagagcc gctgctctag cgggtaatag ctttgcaatt ctgtcatctg acgacgacga      1140
     ggatgtgtcg accatctgcc agccaagacc cctctacagg agaaggaaaa ggagaaacct      1200
     aaggcattca agccaccccc aatcttcatc ccggacgtga ccaacatatc tgcaatgttg      1260
     aagatgatta cgactctcgt gggccccagc aaagacttct catataaaag tgaaagaaat      1320
     aacaacgtgc gagttatgat gcccgacaag gagtcttata ctgagctacg tcagcaactc      1380
     gtggcccaga ataaaaggca tcgcacattt caacccaggg atgagagagc ctacagagtc      1440
     gtaatcaagg gtttacacac cgctgatcgt gccgaaatcc aagaagaact ggaaaaactg      1500
     gggcataagg tcagagacct ccacaatcct attgggagga aaactaaaga accacttggg      1560
     atcttcttcg ccaacctcga acctgctagc aacaacaagg aggtatacca gatcaggaga      1620
     ctgtgcaggt cggtcgtcac catcgagcct ccgctcaaat tcaatgacgt gccccaaagc      1680
     ttcagatgcc aaggctttgg acacgcccag cgctactgct ttctcgaaca ccgctgtgta      1740
     aaatgtggtg gccatcacga cacacgaaca tgcacgaaga aggagaacga gaaggcatgc      1800
     tgccttcact gccaagctga ccaccctgcc tcgtttaggg ggtgccctgc ttataaaaag      1860
     gcgaaggcac agcaagcccc caaacccaga ccggccacct ccatcagcaa gccctgcact      1920
     accaagctcc caagtatctc caatatgagc tacaaagatg cgctcatgtc tacccaagtg      1980
     ccacagcaaa ccaatcccaa cctaacccat caaaccccac ctgaagcccc gcaacccagc      2040
     aacatggaac aaatgtttgc tcgctttgaa ggcatggtca aaatgatgat ggagaatatg      2100
     ttctcgcaaa tgacgcagct tgttgcttcc atcctcaacg caaaagtatg caaataagcc      2160
     taacaatagt tgtttggaat gctaacggcc tgcagaagag cagagctgag gtggaacacc      2220
     tcctaaaaac agatgccatc gatgtactac tggtatcaga aacccacttt tgtcctagat      2280
     cccattttag cattagcggc ttcgatgtta tccctgccaa ccatccatct ggcagagcgc      2340
     gcggaggagc agccatgctc atcaggagtg gcatccagca cacgaagcta ccagcgtttc      2400
     aggaggaatg ggcccagtgt gccctggcca gaatatccag ccaagatgga gacgtcackg      2460
     ttggagcggt ctacttcccc cccagacact cgatcaccga gactcaccta caagtgtttt      2520
     tcgagtcctt tggacctcgc tttatagtag ccggtgactt caacgccaaa cactcctggt      2580
     gggggtcccg ctccatcaac cccaatggca gaacgctcca cagaatcctg cagagcagaa      2640
     gactggattg ccactcctct ggagagccta cccactggcc tacaaaccct gccttgctgc      2700
     ccgacctcct ggactttgcc atctccaaag gcatagggca agccagatta acctgctcca      2760
     actataacaa gctgctatcc gaccacagcg ctataaaaat gcttctcaac atccccgtcc      2820
     tcaaaaaaga gttgcccaga agactcaccg ggaagcacac tgacgcctcc aagttcacac      2880
     tctggatgct gtcctccctg cacccggatc cgccactctt cactccaagc aacatcgatg      2940
     cggcgatcaa gactctcacc gaggagatgc acaatgctgc tgagtttgcc aatcctgctc      3000
     ctccaacgac cccgagaact cctgggagag accttcacct ctggtctcca gaaattgcga      3060
     ccttcgtagc ggaaaaaagg cgcctcagga gaatctggtt ctcctcgcgc aacccaaggg      3120
     acaaggcagc actcaataga gccaccaagg caatcaagga caagctgtgt actctacggc      3180
     aagactcctt cgacagattc cttgaggagc tggaacctgg tgacccacaa cacaatctgt      3240
     ggcatgtcac gcgtcatatc aggaggcctg caaagaaggc gtcgccggtg cgcaaagcgg      3300
     acggttcttg gtgccgctct gaagccgaaa gagctgaagc gtttgcagat cacctccaga      3360
     ttgcatttac accatttgac agatgcactg gtgaagagtg tgctgccacc accaggttcc      3420
     tagagagtcc atgtcctcct agcctgccaa tagagcccgt caccccagaa gaggttgcgc      3480
     aggagatcgc ctctcttaag gctagcaaat ccccaggatt ggatcgcatc gatgccacat      3540
     cccttaaaat gctgccacct ccctgttccc atttgctggc caacatatac aacagatgct      3600
     tctcactagg gtacttcccg agatcgtgga aacgtgcaga agtcattctc atcctcaaac      3660
     ctggaaaacc tgaagccaat cttgcctcat atagaccgat tagtctgctg gcaatcctct      3720
     ccaaaatact cgaaagagta tttctgcgca gagtgttgcc agtactggac gaggctggwy      3780
     tgatccctga tcaccagttt ggattcaggc gatcccacgg aacacccgag caatgccacc      3840
     ggctcgtagc acgcatcctc gatgcattcg agaacaaaag ctactgttcg gcggtcttcc      3900
     tggatgtcaa gcaggcgttc gacagagtgt ggcatcccgg actcctctac aaactcaagt      3960
     cccaccttcc cagttcacac tatgccctac tcaaatcgta tactgaagga agagagttcc      4020
     aagtgcgatg cggttcctca accagcactc caaggcccat acgagccgga gtacctctac      4080
     accctattta cagcaatcct ccctatcata ccctcccgtt acctcacagc agccacctat      4140
     gcagatgaca cggcattcct tgccactgca acaaaccctc aacgagcatc agccatcatc      4200
     cagaggcaac tggatgcatt ggatccatgg ctgaaacgct ggaacatcgt ggtcaacgct      4260
     gaaaaatcct cacatacaac cttctctctg cgcagaggag aatgcccccc ggtcacactc      4320
     gacggcgaca ccatccctac caccagcacc cccaactact tagggctaac cctggacaga      4380
     aggctgactt ggggccctca catcgacagg aagcgtatcc aggccaatat acgccttaag      4440
     caacttcact ggctcgtcgg aaaaaagtcc aaactgcgag agaaactaaa gattctcgtc      4500
     tacaagacta ttctcaagcc aatctagacg tacggaatac agctctgggg cactgcaagc      4560
     gcttcgcata gaaggaagat ccagcgattc caaaacagat gtttgagaat agtctccaac      4620
     gcccatccct accacgaaaa ttccgccatc cacgaggagc tcgggattcc atgggtagag      4680
     gacgagatct ttagacacag tgtgagatat gctagcagac tggagaacca ccccaaccac      4740
     ctggccatca accttctgga caatagccaa tccctaagac cctgcagaga acgcacccgc      4800
     ttgaccttac tcaacactta taattatact taacccctac ccaagtacat tccaagtact      4860
     ccccttacgt taatgttctc ccccataaaa tttaaataat aaataaaaag atattaaaaa      4920
     aaaaaaaaaa aaaaacaaaa aaa                                              4943
//
ID   Jockey-3_DSuz repbase;    DNA;    INV; 5085 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   13-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5085
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 617-617 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           459..2204
FT                 /product="Jockey-3_DSuz_1p"
FT                 /translation="MPTMSDSESELDIHAKVVKAQQTMTNALNSSLQKFSS
FT                 IYKASSINAQPLPSNDIEPELEAIAGDDEDWWTPRNNKRRPESRSPNSANK
FT                 VQRNSTSPKTTESANRFAELSDMDTTEEYLQAYQTVSQLVNNPDQASTSTG
FT                 LSHGSSGNNNNVERNRSQSNNNSIENAPNKHPPNHKPPPIVINNCENLNGL
FT                 IRSIDKIVHPSKYSVKCHSNNSVSILSADSDAYRAISKYLIAKKIPFHSWQ
FT                 LKEDRSYRVVIRGVHHSTPDXHIKESLTLLGHNVRFINRPKSRFDKSKFVN
FT                 LVFVELEPSPTNKEIHEVKTLCRQRVQVELPYKKDDVVQCHRCQDFHHTKN
FT                 NCFLDHNCVRCGQKHAIEACERDIHPVKCVNCGENHTANYKGCVVYQQTVR
FT                 RRKNLSSQGNALPQKTSTKRTTVRSDVVGALSYANVTNGHSRHQNQQGGRS
FT                 QLQQPANLHQNQFPPLGTSNRRPNQQHKPNDLPRLRTQTIQTTDQQQYPET
FT                 RHQQQQSFQQQHQRNHEQFQNDQQWKRQEQMYLRSEEQLSDLVARFDKMLQ
FT                 MMMSMMSLITNLLPQIAPGSAQAAAGLHSAFTARP"
FT   CDS           2087..4930
FT                 /product="Jockey-3_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QNASDDDVNDVPYHQPFTTNSARICSSSRWSPLCLYS
FT                 PTMSQIGLKIGVWNADGLANKSLEMELFVKQHHIDVMLVSETHFCSRSYYQ
FT                 LRGYDVHLSNHPADRHRGGSAIIIKSCLKYYQFLCIEHQTAQCVAIKVRTD
FT                 QGEIVIASIYCPPNSPLTANHYEELLSELGPNFIIAGDWNAHHRLWGSRNS
FT                 TIRGRTLADIVLASHMQVLATGGPTHYPYSQRMPSAIDFAIYKGIRSDFLS
FT                 ISEIVELSSDHIPLIIHYRVSACKLSRKTFVLPLNANIPQFQEAINGLVNL
FT                 NMQLNTPDEIDDATEVFVRNIHIAAESSTCGQRPNSPSDPPHALLKPEVLD
FT                 LVRLKRTLRRRFMRSRDPADKREYRRAEDDLKKLLLRTKSEYFADMLRNAD
FT                 PTKPYGFNLWRATRNIKRQPPRRIPIKRADNTWCRSDSEISMAFAEELEGR
FT                 FQPFNLAKPEDVDNTLAFLNAPSSAIEPIPHVSPEEVCLQIRKLQRSKAPG
FT                 FDGIDSRIAKALPRKGILFLVLLFNSMLRIHHFPTQWKCAVISMIPKPGKP
FT                 ENLVASYRPISLLPTFSKIFERIFLSRMMAVRSVQDAIPDHQFGFRSRHGT
FT                 PEQAHRVTQHILGAFENKQYSSAVFLDVKEAFDRVWHDGLLYKLKTLLPTA
FT                 QYLLLKSYLLERNFMVDVRGERSSIRCIRAGVPQGSVLGPVLYTLYTADLP
FT                 YPRELGTLLATYADDTAFIANSTCRIEATQITQNFLDLYGEWTNRWNISIN
FT                 GNKSQHCNFSLRSKILPRVKLHDTLIPQSAQAQYLGLILDKRLTWRQHITK
FT                 ITATCRSKLRKLNWMLKGKSELSLSNKMLLYRSIVVPSFTYCIQIWGTASD
FT                 SNVMRVQRVQNRALRTIADAPWYVRNDVLACDLHIPSVREQINMHSSRYND
FT                 RLQAHTNHLAASLANRISTRRRLKRRHPGDLWTRGRQVSRVLKQ"
XX
SQ   Sequence 5085 BP; 1521 A; 1295 C; 1037 G; 1230 T; 2 other;
     cagtctcgat catgctttcg tggagtgcag acgcgttttt gcattgctgc gaaawtcttt        60
     gtgaagattc tatggacaag tccaccttcg tggcaaatca atttgttttt gtaaacccgg       120
     cagctaaagc tgcagtgaca gtgctcagac tctccgttag ctctggtgaa tcgcgaaaac       180
     aagtgaaaca gagacctaaa ggcaacagtt gcaatttgtt gatctggcaa atcaccgcta       240
     cttcgaattc aaattcgaat tcaaattatt cataaactca ataaaataaa atttaacaaa       300
     aatacaggca tccgctcccc gtactgaacc cggtgcctcc cggctgcaag gtgcacacct       360
     tgcccactag gctacgactg ctttcgtgga acctactcta agtgggtttg tctactggaa       420
     gtcggtaaag cagtacaaag cagtgcacag cttccaatat gcctacaatg tcggactccg       480
     aatccgaact cgacatccat gcaaaggtgg ttaaggcgca acagactatg actaatgctc       540
     ttaattcctc gttacaaaaa tttagcagca tttataaagc cagttctatc aacgcccagc       600
     ctttaccatc taatgacatt gaacccgagc tagaagccat agccggcgac gatgaagact       660
     ggtggacccc aaggaacaac aaacgccgtc cagagtccag gtctcccaat tctgctaata       720
     aagtgcagag aaattccact agtcccaaaa ccactgagtc cgccaaccga tttgctgagc       780
     tttcggacat ggacacaacc gaagaatatc tacaagctta ccaaacagtc agccagttgg       840
     ttaacaaccc tgatcaggcc agcaccagca caggcttaag ccacggcagc tccggtaaca       900
     acaacaacgt cgaacgcaac agaagtcaat ccaacaacaa cagtatcgaa aatgctccta       960
     acaaacaccc acccaatcac aagccaccgc cgattgtaat caataactgc gagaatctga      1020
     acgggcttat tcgatccata gataaaatcg tacacccgtc taaatactcc gtaaaatgtc      1080
     attccaacaa ttctgtttcg atcctttctg cagattcaga cgcgtataga gcaatcagta      1140
     aatacttgat tgcaaaaaag atcccgttcc actcctggca gcttaaagag gacagatctt      1200
     atcgcgtggt tattcgaggt gttcatcact ccactccgga cgawcacatc aaagaaagcc      1260
     ttaccttgct tggccataat gttcgcttta tcaatagacc aaaaagccgt ttcgacaaat      1320
     caaagttcgt caacctagtg tttgttgaac tagagccatc tccaaccaac aaggaaatcc      1380
     acgaagttaa gaccctatgt cgccagcgtg ttcaagtgga attaccgtac aaaaaggatg      1440
     atgtcgtaca atgccatcgt tgccaggact tccaccatac aaaaaacaac tgctttctgg      1500
     atcataactg tgtgagatgt ggtcagaaac atgccataga ggcctgcgaa cgtgatattc      1560
     atcctgttaa atgtgttaat tgtggtgaaa atcacacagc aaactacaag ggctgtgttg      1620
     tctaccagca gacagtaaga cgccgaaaaa atctttcatc ccagggtaac gctcttcccc      1680
     aaaaaacctc taccaaaagg actactgttc gatcggatgt cgtgggagct ctgtcttacg      1740
     caaatgtcac caatggtcat tctcgtcacc aaaaccaaca gggtggccga tcccagttgc      1800
     agcagcctgc gaacctgcac cagaaccaat tccctccact gggaaccagc aataggagac      1860
     ctaaccagca acataaacca aatgacctcc ctcggttacg gacacaaacc atacagacga      1920
     cagaccaaca acaataccca gagacccgcc atcagcagca gcagtccttc cagcaacaac      1980
     atcaacgaaa tcacgagcaa ttccagaacg atcagcaatg gaaacgacaa gaacaaatgt      2040
     atctacgatc tgaagaacaa ctgtctgacc ttgttgctcg gtttgacaaa atgcttcaga      2100
     tgatgatgtc aatgatgtcc cttatcacca accttttacc acaaatagcg ccaggatctg      2160
     ctcaagcagc cgctggtctc cactctgcct ttacagcccg accatgagtc aaattggact      2220
     caaaatcggt gtgtggaacg ccgacggctt ggccaacaag tcactcgaga tggagctttt      2280
     tgtaaaacaa catcatatcg acgttatgtt ggtcagcgaa actcatttct gctctagatc      2340
     atactaccag ctaaggggat atgacgtaca tctttcaaac catcctgctg atcgccatcg      2400
     cggaggatcc gcaatcatca tcaaatcgtg ccttaaatac taccaatttt tatgtataga      2460
     acaccaaacg gctcagtgtg ttgcgattaa agtcaggact gaccaagggg aaatcgtcat      2520
     tgcgtctata tattgtcctc caaattcgcc tcttacagct aaccactacg aagagcttct      2580
     tagtgagctt gggccaaatt ttataattgc aggggactgg aatgcgcatc atcgtctctg      2640
     gggatcacgt aactctacaa ttcggggcag aactctagcg gatattgtac tcgcatctca      2700
     tatgcaggtt cttgctaccg gagggcctac acattacccg tacagccaac gcatgccatc      2760
     agccatagac tttgccattt acaaaggaat tcgttctgat tttctaagca tctctgaaat      2820
     tgttgaacta agttcggatc acatcccact aataatacac tacagagttt ccgcctgtaa      2880
     gctttcccgc aagacgttcg tcctgcccct gaatgcaaat atcccacagt ttcaggaagc      2940
     gattaacggc ttagttaacc ttaacatgca gctgaacact cctgatgaaa ttgacgatgc      3000
     aactgaagtg tttgtgcgaa atattcacat cgctgccgaa tcatcaacct gcggccaaag      3060
     accaaacagc ccatctgatc cacctcatgc ccttttaaaa cctgaggtcc tggatttggt      3120
     gaggcttaaa aggacgttgc gccgcagatt tatgcgttct cgagaccctg ctgacaaaag      3180
     agaatatcgt cgtgctgagg acgatcttaa gaaacttttg ctgagaacga agagtgaata      3240
     ctttgctgat atgctccgca atgctgatcc cacaaagccg tatggtttca atctctggag      3300
     ggcaacaagg aatattaagc gacagccccc tcgccgaatt ccaataaagc gtgccgacaa      3360
     cacgtggtgc agatcagaca gcgaaatttc gatggccttt gctgaggaat tggaagggcg      3420
     ctttcagcca ttcaatcttg ctaagcctga agacgtggat aataccctag cattcctaaa      3480
     tgccccctcc tcggcgattg aacctatccc acatgtgagt ccggaagagg tttgccttca      3540
     aattcgcaag ctgcaacgca gtaaggctcc cggtttcgac gggatcgaca gcagaattgc      3600
     caaggcgtta cctaggaagg gtatactttt tctagttctt cttttcaact ccatgctacg      3660
     tatccaccat tttcccacac agtggaagtg tgctgtgata tcgatgatac ccaagccagg      3720
     aaaaccggaa aaccttgttg catcctaccg acctataagt ctactgccca ccttctctaa      3780
     aatattcgaa agaatattcc ttagtagaat gatggcagta agaagtgtgc aggacgccat      3840
     tccagaccac cagttcggat ttagaagtcg acatggaacc ccagagcaag cgcatcgggt      3900
     aacgcagcac atccttggag cgttcgagaa caagcagtac agctcagcag tctttcttga      3960
     cgtcaaagaa gcttttgacc gcgtttggca cgatggcttg ctgtataagt tgaaaactct      4020
     cctgcctact gcccaatatc ttctcctaaa atcgtatctc ttagaacgaa attttatggt      4080
     agatgtgaga ggcgaaagat cgtccatcag atgcattcga gctggcgtac ctcagggtag      4140
     cgttcttggt ccggtactat acactctgta taccgctgac ctgccatacc ctagggaact      4200
     gggtaccctc ttggctacat atgctgatga cacagccttt attgccaact ccacgtgtcg      4260
     aattgaagca acccaaatca cacaaaactt tttggatttg tatggcgaat ggacgaatcg      4320
     atggaacatc tcgataaacg gaaataagtc tcagcactgc aacttctctc ttagaagtaa      4380
     aattctcccc agagtgaaat tacatgacac actcataccg caatcagccc aggctcagta      4440
     cttgggcttg attttggaca aacgtcttac gtggaggcag cacataacca aaattacagc      4500
     aacatgtcgc tccaaactgc ggaaactaaa ttggatgctt aaaggtaaaa gtgagctcag      4560
     ccttagcaac aagatgttgc tgtacaggtc gatagtggtt ccttcattca cgtattgcat      4620
     acaaatatgg ggtaccgctt cagactcaaa tgtcatgagg gtccaaagag ttcaaaaccg      4680
     ggcgctacgt acgattgcgg atgcgccttg gtacgtaagg aacgatgtcc tggcttgcga      4740
     ccttcacatc ccctcggtgc gagagcagat taacatgcac tcaagccgtt acaacgaccg      4800
     tctacaagcc cacacgaacc acctagcagc atccctggca aaccgaatct caacgagaag      4860
     aagactaaag cgaaggcacc ccggtgatct ctggacaaga ggacgtcagg tctctcgagt      4920
     cctaaagcaa tgaaattgtt caattattgt aaatattgtt aatctccttt tctgttatgt      4980
     ttccatgtta atttttcctc ttcgtagaca acgttttata gccattaagt tggctgatca      5040
     acgttaaata aataaatttg ttatactaaa aaaaaaaaaa aaaaa                      5085
//
ID   Jockey-3_DT repbase;    DNA;    INV; 4412 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4412
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1705-1705 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~95% identical to Jockey-2_DEl.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1896
FT                 /product="Jockey-3_DT_1p"
FT                 /translation="MIKNVDQRTQRQKQQDEAREKIQREQDKRRLSLARNN
FT                 AYFSFTNNTLEPKVQENASLLTAENQRASSCSPALLLNAQTPWSEQCKTPT
FT                 ELQPPGATTTATTTSTTTASVANIAITTPLSSSAAGKATTLLSAKIGSNGK
FT                 NKATVEEMTNPQAGSAMQTGMDRYINISKRKLTPSKNADGNKPKVNRTSKG
FT                 PENLGPLNENRFSILAEHETESEQLAPRKLKPPPIFIREKTSNALVNKIVE
FT                 LVGKDSFHVIPLMKGNISETKLQTRTEDDFRAVSKYLNDAKKNYYTYQLKS
FT                 CKGLQVVLKGIEPDVTPYEITEALKENGFCAKNVINIMNKNKKPQPLFKVE
FT                 LEPDSRTLKKNTVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEYGHTR
FT                 GYCTLRSVCVACGNIHDSEPCPANKEDSLTKKCVNCQGNHTANYRGCPVYK
FT                 EMKSRMQRTTTARYQNTQNNYMRSQTTPEVFFAKAARSSFGPSITTNGISY
FT                 ASALKSGTAHIEPKMDNIPQAMGHPQSDMETMMITLQHNMMEFMSFMKTTM
FT                 QTLVQTQNILLKILAAQQSK"
FT   CDS           join(1903..2238,2088..4301)
FT                 /product="Jockey-3_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPSLRITLWNANGVSRHKPEISQFLNENHIDVMLLAE
FT                 THLTSKYNFQIRGYTFYSTDHPDGKAHGGTGILIRDRIKHHFHQRFAKSYL
FT                 QATSIKLQLGNCNLAIAAVYFLAISTWRNRHLNKRPHQTPLSPKVCKKLFA
FT                 SYIDKITVGQLQPCHCRCLLSRNLISAKSLLDLSSDHSPVLITLLESPELI
FT                 EHPWRLTSHRTNWLKFKKYVSSHIELTPQLNIKEDIDCYADALESVLVAAA
FT                 KVSTPQGRDGRTHQHKTNLEIEQLVLEKRRLRRAWQTSRSPSSKQSLKEAG
FT                 RRLTRALRHEEVEAQRQYIEKLSPTSTKHPLWKAHPNLSAPSETVIPIRDS
FT                 SGSWARSDKDRACTFALHLRNVFQPNPATNSFALPSPPIRIETETDPIQFQ
FT                 PNEVAKVISEQLKPKKAPGGDLITAKMLIELPNCAVEVICKLFNGITRLGY
FT                 FPKKWKKSVIIMIPKPGKDHTIPASYRPISLLSCLSKLLEKCLLTRIIPYL
FT                 KEHNVIPAHQFGFRESHGTIEQVNRLTTEIRSAFEYREYCSAVFLDVAQAF
FT                 DRVWLDGLMHKIRTILPENTHMILESYLYNREFAVRCNTTTSDDYTIEAGV
FT                 PQGSALGPTLFLLYTADIPTNVRLTTSTFADDTAIISRSKCPIQATALLAD
FT                 HLVVVERWLSDWRIKINAQKCKHITFTLNRQTCPPLTLNNTPLPQADDVTY
FT                 LGVHLDRRLTWRKHIEAKKIHLKLKSIGLHWLLNARSPLCLDFKVLLYNST
FT                 LKPVWTYGSQLWGNASSSNIDIIQRAQSKILRTITGAPWYVRNDNIHRDLG
FT                 ILPVKDEISKQKASYLTKLTSHPNQLARGLARVSYRTRLQRNDLPAQQ"
XX
SQ   Sequence 4412 BP; 1464 A; 1115 C; 866 G; 967 T; 0 other;
     taccaattca ttgtcggtcg cgtgtagacg tgttttctta acgctccgga aaaacaaaag        60
     aaaaacaatc tttcacccag ttgaaaacgt tcgaaaattt agaacagcgt ggtcttgcgt       120
     ttcgcgatgc taatcgcata ttgtaaacta aagttttaat taattaatta atctttacgc       180
     actaacaata agcaaatgat taagaacgtg gatcagcgca ctcaacgcca aaaacaacaa       240
     gacgaagccc gtgaaaaaat tcagagagag caagacaaac gtcgtctttc tttggcccgc       300
     aacaatgctt atttctcttt tacgaataat actctagaac cgaaagtgca agaaaatgca       360
     agtttactga ccgccgaaaa ccagagagct agttcttgct ctcccgccct gcttctcaac       420
     gctcaaacgc catggagtga gcaatgcaaa actccaaccg agcttcagcc acctggtgca       480
     acaacaacag caactactac gtcaactaca acggcctctg tcgccaacat tgcaataacg       540
     actccactct cttcttctgc agcgggtaaa gcaacaacac tattaagtgc aaaaatcggg       600
     tcaaacggca aaaacaaagc tacggttgaa gaaatgacaa atccgcaagc gggttcggcc       660
     atgcagacag gcatggatcg ctacataaat atttccaagc gcaagctaac gccctcaaaa       720
     aatgctgacg gcaataagcc caaagtaaac cgtaccagca aaggccctga aaatctcggg       780
     ccactaaatg aaaatagatt ttccattctg gcggagcacg aaacagagtc tgaacaatta       840
     gccccaagga aactgaagcc gccacctatc tttattcggg agaagacctc gaatgcccta       900
     gtcaacaaaa tagttgagct agtcggaaaa gatagctttc atgttattcc gcttatgaaa       960
     gggaatataa gtgaaactaa actgcaaacc agaactgaag acgatttccg agcagtgtca      1020
     aagtacttaa acgatgccaa aaagaattac tacacgtacc agctaaaaag ctgcaaaggc      1080
     ttgcaagttg tgcttaaggg aatagaaccc gatgtgaccc cctacgaaat tacagaggct      1140
     ttaaaagaaa acggtttctg tgcaaaaaat gttataaaca ttatgaacaa aaacaagaag      1200
     ccgcaaccac tattcaaggt cgagctggag ccagacagca gaactttgaa aaaaaacaca      1260
     gtgcacccga tctacaagtt gcagtacctg ctgcatcgta ggatcacagt agaagagccg      1320
     cacaaacgga acgggccagt gcaatgcacg aactgccagg aatacggaca caccaggggt      1380
     tactgcaccc tcaggtcagt atgtgtagct tgtggaaaca tccacgactc cgagccctgc      1440
     cctgccaaca aggaagactc tctcactaaa aagtgtgtaa actgccaagg aaaccacaca      1500
     gcaaactaca gaggctgtcc agtctacaag gagatgaaaa gtcggatgca acgaacgaca      1560
     acggcacgct accagaacac acagaacaat tacatgagat cacaaacgac accggaagtt      1620
     ttcttcgcaa aagcagccag gtcttcattt ggcccttcaa ttaccaccaa cggcatttct      1680
     tacgccagtg ctctaaaatc aggcacagct cacatagaac cgaaaatgga taacatcccg      1740
     caggccatgg gacatcccca aagtgacatg gaaactatga tgatcacttt gcaacataat      1800
     atgatggaat ttatgtcctt catgaaaacc accatgcaaa cccttgtgca aacccaaaac      1860
     attttgttaa aaatactcgc agctcagcag tccaaataaa ctatgcctag tcttcgaata      1920
     actttgtgga acgccaacgg tgtttcacgg cataaacctg aaataagtca gtttctgaac      1980
     gaaaaccaca tcgacgttat gttgctggca gaaacgcatc tcaccagcaa atataatttt      2040
     caaatacggg gatacacgtt ctacagcaca gatcatccag atggtaaagc acatggcgga      2100
     accggcatct taataagaga ccgcatcaaa caccactttc accaaaggtt tgcaaaaagt      2160
     tatttgcaag ctacatcgat aaaattacag ttgggcaact gcaaccttgc cattgccgct      2220
     gtttactttc tcgcaatcta atatctgcaa aatcgctttt ggatctatca tcggaccact      2280
     caccagtgct aataactctt cttgaaagcc cggaattaat cgagcaccct tggaggctga      2340
     cgtcgcatcg aaccaactgg ctgaagttca aaaagtacgt aagttcccac attgaactga      2400
     ctccacagct caacatcaag gaggacatcg actgctatgc cgatgcactg gagtctgtac      2460
     tcgtcgcagc agccaaagtc tctacaccgc aagggaggga tgggcgcaca caccaacaca      2520
     aaactaactt ggaaatcgaa cagcttgttt tggagaaaag acgtttgagg cgtgcttggc      2580
     aaaccagcag atcgccatcc tcgaaacaaa gtcttaagga agctggtcgc agacttacca      2640
     gggccctaag gcacgaagaa gtagaagcac aacgccagta cattgagaaa ctttcaccca      2700
     ccagcaccaa gcatcccttg tggaaggccc acccaaatct aagtgcgccg tccgaaacag      2760
     taatccccat aagagactct tcaggcagct gggccagaag cgacaaagac agagcttgta      2820
     catttgcttt acaccttcga aatgtctttc agccaaaccc tgcaacaaat tcattcgcac      2880
     taccgtcgcc gccaattcga atcgaaactg agacggaccc aattcagttt caaccaaacg      2940
     aagttgcaaa agtcatcagc gagcaattga aaccaaaaaa ggccccaggc ggtgatctaa      3000
     taactgcgaa aatgctaatt gaactcccaa actgtgcagt tgaggtcatt tgtaaactct      3060
     ttaacgggat tacacgactt ggctactttc caaaaaaatg gaaaaaatcg gtaatcataa      3120
     tgatcccaaa gccaggaaaa gatcacacaa taccagcttc atacagaccg ataagtttac      3180
     tctcgtgtct gtcaaaactg ctcgaaaaat gccttttgac gcgcataatc ccatatctga      3240
     aagagcacaa cgttattccg gcacatcaat ttggctttcg agaaagccat ggaacaatag      3300
     agcaagtcaa cagattaaca acggaaatac ggtctgcatt cgaatatcga gaatactgca      3360
     gtgcggtatt ccttgatgtt gcacaggctt tcgatcgagt ctggcttgat ggccttatgc      3420
     acaaaatcag aactattctg ccggaaaaca ctcacatgat acttgaatcg tacctttaca      3480
     acagagaatt cgccgtgaga tgcaacacta caacatccga cgattacact atagaggctg      3540
     gagttcccca aggtagcgcc cttggtccaa ctctatttct cctttacacc gcagatattc      3600
     ccacgaacgt ccggctaact acttccacat tcgcagacga taccgcgatc ataagtcggt      3660
     ccaaatgccc aattcaggca acagcactac tagctgatca cctcgtggta gtggagaggt      3720
     ggttatcaga ctggcgtata aaaataaatg cgcaaaagtg taaacacata acgtttactc      3780
     ttaacagaca aacgtgtccc ccgctaactc tgaataacac gccacttcca caagctgacg      3840
     atgtaacgta ccttggcgtt cacctagaca ggagacttac atggaggaaa catatcgaag      3900
     ctaagaaaat tcatctaaaa ctaaaatcca ttggcctcca ttggctctta aatgctcgct      3960
     cccccctctg cctggacttc aaggtcctgc tctacaattc aacgcttaag ccagtctgga      4020
     catacggctc ccagttgtgg ggaaacgcga gcagcagcaa catcgacatt atccagcgag      4080
     cacaatcaaa aatcttgaga actatcactg gggcaccttg gtatgttcgg aacgacaaca      4140
     tccacagaga tcttggcatt ctgcccgtaa aagacgaaat atcaaaacaa aaagcgtcct      4200
     acctcaccaa gctaacttct catccaaacc aactcgccag ggggctagcc agggtctcat      4260
     accggacccg attgcaacga aatgaccttc cagctcagca atagttatta gagcccttta      4320
     atctcgcgtc agtcatcatg actgttagat agttttttaa tttaagattt tatatactta      4380
     ttgttagtct caattcagag aagatccaat aa                                    4412
//
ID   Jockey-3_DVi repbase;    DNA;    INV; 5343 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5343
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1943-1943 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1171..2466
FT                 /product="Jockey-3_DVi_1p"
FT                 /translation="MDKMDWQAEPRATQLIKTSSTKRKKTNIRASNPDSEN
FT                 SSCTSEPGEIRRKPVRKQRKQPSRVHLPDGPSTSKAARENLTSNRFASLST
FT                 DEDDEESSASDDSTEVIGLAKGQPNKEPAKEPKTIRPPPIFIPDVTNIKAL
FT                 TNAITGALGKAVEFTYKATKNNNIRVMTPDKASFTALKAFLNENNKRYQTF
FT                 QPRDERAYRIVVKGLHHSTELVEIKEGLSNYGHEVRDLYNLTQKSTKKPLN
FT                 IFFVNLEPAKNNKDAYKIKRLCCSVVTVEPPLKFNDVPQCYRCQGYGHTQR
FT                 YCHLEHRCVKCGGGHSTSECSKKSSDPAFCLHCQGPHVASYKGCPAYKKAK
FT                 SLLTANRQTAPRDGLPLNCSKVNANISFAKAAKSTYEANQAPCPDSQPDNQ
FT                 LNAIVTRLEVMFEKMMDKILGQMTQMLETVCSTLCKKV"
FT   CDS           2454..5162
FT                 /product="Jockey-3_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQEGLEITIWNANGLCKNRPEVELYCKTNNTEILLIS
FT                 ETHFSERSYFCLRGYDLISANHPNGRARGGAAILIRSNISYEILPPTLEEW
FT                 IQCAKIRVSTTLGDVTIAAAYCPPKHNARDEEFGTLMDSLGTRFLIGGDFN
FT                 AKHTWWGSRTNNPKGYALFRQTRLRNLDCHSTGAPTYWPTDPYKVPDVLDI
FT                 AITRGLDTGRIQVREVEDLLSDHSAIAISIFAAXMRKSARKKLIYKATDIG
FT                 KYQTWLDNCTNPSPPLNSPEDIEAAVTELTTHIHNAASHAAPRLSSRPRVE
FT                 NRDVHLWSQQVAELLAEKRRLRRVWFLSRNPRDKTVLNRITKELKETLKIL
FT                 RKDALDSFLTQLAPNDPQHNLWQVTKHIKRPQKRINPVRKTDGSWCRTEXD
FT                 RANAFAEHLETVFTPFSRCTSEEASETAHQLSVPPEGTETIPPVHEEEIAE
FT                 YITALNNKKAPGDDGINAMALKLLPQRSISFISKIYNKCMEIGYFPAQWKS
FT                 AQVVMIPKPGKPEDNLASYRPISLLPALSKILERVFLSRVLPVLDEAGLIP
FT                 DHQFGFRRCHGTPEQCHRVVQTILDAFEEKKYCYAVFLDVKQAFDRVWHPG
FT                 LLQKLKGNLPHAYFLFLASYLENRTFRVKCGXTVSNTKHIHAGVPQGSVLG
FT                 PLLYNVYTADLPVTGNPNVRVATYADDTAFLTISKSPGEASSLMQMQLNLV
FT                 NDWQKRWNITVNGDKSTATTFALRSGNCPPVQLDGVTIPEEPNPKYLGITL
FT                 DRKLTWRAHLTKKRNQCEQRLKAYYWLMGRRSRLSTSSKILTYKAIIRPIW
FT                 TYGIQLWGTACRSNIRIIQTFENKALRIATNAHIYHDNATIHDVLKFPWVK
FT                 DEIAKSSRRYIKRLHNHPNTLAICLLDNSQQRRRLCRAHPLDLPWNNIAI"
XX
SQ   Sequence 5343 BP; 1797 A; 1309 C; 1042 G; 1192 T; 3 other;
     gcaggatcaa ccagaataat gtttttataa tttgtatgta caaaatatac atacatattt        60
     acaaaatgta tttacattac aacttaatat atttttgaat aaaaaatata ctatagatat       120
     taatgttaaa tataaacgaa tatggccatt gttacatagc atttcatgtt cgttaattta       180
     cgtttcacat tttttaagat tcaccacata ttatatctat atgaaaatat atacaattcg       240
     ttcaaaaata tctttatatg tacacttact taatatatat tttatcacac attgcttaat       300
     accataatgg aataaacact ttaattttga tgacaaactt gataatttat ttatatgtat       360
     aaattatgta tgcataactt gcaaacataa ttatgcgata aaaatatatt aagtaaaaca       420
     agtcacatac tatattaaat agtatgtaaa atgttaaagt ttcatttatg acaaatattt       480
     aaaataatta caaaaatttt agaaactttt tttccagcgt actaatcgtc catacatctg       540
     tatgaatcga atttccactg gatgcaattg ttaaatttta cgataaaagg aaacccattt       600
     gtttacacga tgtagtaaca ataaaattat tactaacaac acatcttggc ttgaaagttt       660
     cacaattatc tttttttctt aatatcgtaa gccaaatgtt atacaacata acaaataacg       720
     atatctaact caaataacga gtatatgaca aacttaaaat tatacgcttt cagcgtataa       780
     tgtgatgagc acacactgct caccatgaat aggtttctag tcgcgatcga acactcgttg       840
     agtaaagacg tgcctgcgga ccgctgcgaa gcattccaaa tacacaagca acataaacaa       900
     cagttagttg cggcgaaatt ttcaggccag ctgcgctctg attggtcgct gcaaccgtta       960
     ctgcgctctt tcagcttgcg tgccgtgcgc aaataacggc gcactaatac ttacacacgc      1020
     acacgcttac atgcttgtgc gcgttatttc aacacacaca cgacaattag aatacaaaaa      1080
     caaacaacaa cacagactag cactcgctgc ttacgctcgc cagacgggca gcttgcttgc      1140
     tcccgctccc ccgtacccct caccaaccag atggacaaga tggactggca agccgagcca      1200
     cgtgctacac agctcatcaa aactagcagc accaagagga agaagaccaa catcagagct      1260
     agcaaccctg actctgagaa ttcgagttgc actagtgaac ctggagaaat aaggaggaag      1320
     cccgtccgca aacagcgcaa acagccttcc cgcgtacacc tacctgacgg accaagcacc      1380
     agcaaagctg ctagagaaaa tctaacaagt aacagatttg cttcactctc tacagatgaa      1440
     gacgacgaag aatcttcggc cagcgatgac tccactgaag tcataggact agctaagggc      1500
     caaccaaata aggagcctgc taaagaacct aagacgatca ggccaccacc aatttttatt      1560
     ccagacgtga ccaatatcaa agcgcttacc aatgccataa ctggcgccct tggcaaagca      1620
     gtagaattta catataaagc cactaaaaac aacaacatta gagtaatgac gccagataaa      1680
     gctagcttca ctgcactcaa ggcatttctc aatgaaaaca acaaacggta tcagaccttt      1740
     cagcccagag acgaaagagc ctaccggata gtggtcaaag gcctgcacca ctctactgag      1800
     ctggtcgaga tcaaggaagg tttaagcaac tacgggcacg aagtaagaga cctttataac      1860
     ctcacacaaa aaagcacaaa aaaaccccta aacatattct tcgtaaatct cgagccggcg      1920
     aaaaataaca aagacgcata caaaatcaaa aggctttgct gctctgtggt tacagtcgag      1980
     cctccactga agtttaacga tgtcccccaa tgctatcgct gccaaggata cggacacact      2040
     caaagatact gtcacctgga acatagatgt gtgaaatgtg gaggcggaca ctccacgtcg      2100
     gaatgctcaa agaagagcag tgacccggcc ttctgcctgc actgccaggg tccccatgtg      2160
     gcctcataca aaggatgccc agcttataag aaggcaaaga gcctcttaac ggcaaacaga      2220
     cagacagctc caagagatgg actaccacta aactgcagca aagtgaatgc aaacattagt      2280
     tttgctaagg ctgcaaagag cacctacgag gcaaatcaag ctccctgccc ggattcacag      2340
     ccggacaatc aacttaatgc gatagtgaca aggctagagg tcatgtttga aaaaatgatg      2400
     gataaaatac taggtcaaat gacacagatg ctggaaactg tttgctccac attatgcaag      2460
     aaggtttaga gatcacgatc tggaatgcta acggcctgtg caaaaacagg cctgaggttg      2520
     agctttactg caagaccaac aataccgaaa ttctcctcat atctgaaacc catttctctg      2580
     aaagatctta cttctgccta cgaggctacg acctgatctc agccaatcac cccaacggga      2640
     gagcccgcgg cggagctgcc attctaattc gcagcaacat aagctatgag atcctgcccc      2700
     caactctgga ggagtggatc caatgcgcaa aaataagagt gagtaccacg ctgggagacg      2760
     tcacaatagc cgctgcctac tgccccccca agcacaatgc tagggacgaa gaattcggga      2820
     cgctaatgga cagcctaggc acaaggtttc taataggtgg agacttcaac gccaagcaca      2880
     cctggtgggg ctccagaaca aataacccta aaggctacgc gctgttcagg caaacccggt      2940
     taagaaacct cgactgccac agtacaggcg cacctacata ctggcctaca gacccatata      3000
     aggtgccaga cgtcctggac atcgcgataa ctcgtggttt ggatactggc agaatccaag      3060
     tcagagaagt agaggacctc ctgtctgatc acagcgccat agccatctct atatttgctg      3120
     casccatgag gaagtctgcc cgcaagaagc ttatatataa agccactgat attggcaaat      3180
     atcaaacctg gttggacaac tgcaccaatc ccagcccccc actaaatagc ccggaggaca      3240
     tcgaagcggc agtcacagag ctaacaactc atatccacaa tgcggcgtca catgcggcgc      3300
     caagactctc aagccggccc agagttgaaa atagagacgt tcacctctgg tcacaacaag      3360
     tggccgagct gcttgctgaa aaaaggcgac tgaggcgggt ctggttcctg tccaggaacc      3420
     cgagggacaa gacagtccta aatagaatca ccaaggaact gaaagagaca ctcaagattc      3480
     tgagaaaaga tgccctagat agttttctta cgcagcttgc ccctaacgac ccacaacaca      3540
     atctgtggca agtaaccaag cacattaaaa ggccacagaa aagaatcaac ccagtaagaa      3600
     aaactgatgg cagttggtgt agaacagaaw ctgacagagc caatgccttc gccgagcact      3660
     tagaaactgt gttcacccct ttcagcaggt gcacgtcaga agaagcatcc gaaactgcac      3720
     accagctaag tgtaccgccc gaaggaacgg aaacgattcc accggtacat gaagaggaga      3780
     tagcggaata cataactgcg ctaaacaaca aaaaagcccc aggcgatgat ggtatcaatg      3840
     caatggcatt aaagctacta ccgcaaagaa gcatctcgtt catctccaaa atatataaca      3900
     aatgcatgga aatcggctac ttcccagcgc aatggaaaag tgcacaagta gtaatgatac      3960
     ctaagcctgg taaacctgaa gataatctgg cctcctatcg cccgattagt ttactgccag      4020
     cgctctcaaa gatactagaa agagtatttt tgagtagagt tttgccagta ttggacgagg      4080
     ccggtctgat cccggatcac caatttggct tcaggcgctg tcacggaacc ccggaacaat      4140
     gccacagagt tgttcaaact atcctcgacg catttgagga gaaaaaatat tgctacgccg      4200
     tattcctcga tgtcaaacaa gcctttgaca gagtttggca tcctggactc ctgcaaaagc      4260
     tcaagggtaa cctcccacac gcctacttct tgtttctggc ttcatatctg gagaaccgaa      4320
     cattccgagt taaatgtggg gawacagtgt ccaacaccaa acacattcat gctggcgtcc      4380
     ctcaaggaag tgttctgggt ccgctgctct ataacgtgta cacagctgac ttgcccgtca      4440
     ctgggaaccc aaacgtgcgc gttgccacgt acgccgatga cacggcattt ctcaccatct      4500
     cgaaatcacc tggcgaagct agctcactga tgcagatgca attgaacctc gtcaacgact      4560
     ggcaaaagcg atggaacatt acagtcaatg gtgacaagtc aactgcgact acctttgcac      4620
     tccgctcggg taactgtcca ccagttcaac tagacggagt cacaatacca gaagaaccca      4680
     atcctaaata tctgggaata acgctagaca ggaaactcac ctggagagca cacctaacaa      4740
     aaaagcgaaa ccagtgtgag cagcgactaa aagcctacta ctggcttatg ggcaggagat      4800
     caaggctttc cacctcctcc aagattctga cctacaaggc gatcatcaga ccaatctgga      4860
     cctatggaat ccagctctgg ggtacagcct gcaggtccaa tatccggatc attcaaactt      4920
     tcgaaaacaa agcattacgc atcgctacaa acgcacacat atatcatgat aacgccacca      4980
     tccacgatgt tctcaagttc ccctgggtaa aagacgagat tgccaaaagc agcagacgat      5040
     atatcaagcg attacacaac catccaaaca cactagccat ttgtctgcta gacaacagcc      5100
     aacaaaggag aagactctgc agagcccacc cactggatct cccatggaac aatatagcca      5160
     tttgaccttc tgtcatggaa taacatagcc atttaactct ctctaagaat aacaactata      5220
     ctaagctcaa tacatgaaat acacataagc taagtttata attatacaat ttaatggttg      5280
     tccacgatgg atagtattaa atcaataaac aaaatgagaa aaaaaaaaaa aaaaaaaaaa      5340
     aaa                                                                    5343
//
ID   Jockey-3_DYa repbase;    DNA;    INV; 5392 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5392
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1924-1924 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~99% identity.
CC   It is similar to TAHRE and TART.
XX
FH   Key           Location/Qualifiers
FT   CDS           905..3991
FT                 /product="Jockey-3_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LRRLPHLPRPKPQNNYQPNCPTHLSKSHRNRLYTKCS
FT                 HSPNPLKWHPCKYDNCCPIYCPPVYKWTHENFHKLFSHFETLLDGKSNFIL
FT                 SGDCNSKHRCWGNYSSCARGRSLMQAIMANKLLDVVATGQATHFPFDRRKQ
FT                 PSALDFAICKGLRRRITRTFSSDDLSSDHLPIQIILDLEEANLQLKKVSNS
FT                 ILKRNTNMEKFKRILEDKMLLNTEIRTGQDIDDCIDIFLNNIKTAANEATP
FT                 KNRPFTNPRENSRRRENNLSLDEATTRLLDEKKELNRILRAAGTEEAKKWF
FT                 KSAQNKLAKEIRKLRTSQINNELQLIDTTDRYRMQKLWKWTNNVKKQPQPI
FT                 WPLKKDDDCISMRTASPWTRTLDERAEAFASHLESRFKANLRNSIEDREII
FT                 KKELDKFKSLKPRIETGTSGLKPVTLAELDLLIKSLESKKAPGADNISNKV
FT                 ISNLPKKARIYLILIYNKILNTGHFPKKWKHACITMILKPGKSPSLLNSYR
FT                 PISLLSGLSKIFERIILNRLYNIESFSKAIPNHQFGFRKGHGAEHQLARVT
FT                 QFILKAYEDKEVCSATFLDITEAFDRVWHDGLLLKLTKLIPKQLFNVLESY
FT                 LTGRTFQVRINNETCSRIGTINAGVPQGSILGPVLYSIYTSDMPFPIIKGY
FT                 IRNISLPDYHPKNIILATYADDTIIISRSNNTRSAININQTYINKFCRWAK
FT                 KWDIAINGKKTGHVLFSLKNISENVHTTPIVDGQRAIKLCKHGYLGVMLDR
FT                 RLTFGAHLILLKGKIIAAYKRLEWLLGKNSHLPKRTKLLLWKQIISPIWHY
FT                 AIAIWGSLTSATQTKKIQTLENKLIRRIIKANRYTKQSAIREKYKIKSFEE
FT                 VFDQASKRYANSIADHENPLIKELLTKSFKPIRLAASRTRYVNQYTKYLLP
FT                 LLQNIXKPPDEPTYKSLYSYTDKEELEIVSKIRYDYRQTLPTLLQLEDEEM
FT                 EARDCKAEEERKEREKEERKKALEKGPPDRWCELLINKFSKMYKKGMITRE
FT                 RVIELMLGQPPTVIKLVIPDYEP"
XX
SQ   Sequence 5392 BP; 1953 A; 1365 C; 966 G; 1097 T; 11 other;
     gaaacgtcaa aaggatagat tttcacaaaa ttaggacaat wwtggacgca aaaagcaaca        60
     ataacgaacg gcagcccccc cctttcaaca agacccccca cctaccatat agttccgaaa       120
     tggccaaatc tcggaaggaa gccgccagga aaactacatc aaacccgttc cggcaaaatg       180
     cgaaggacga taggccaaac caaacgggat tctcttcaca tgaagctgcc atccaaaaac       240
     ggctgaataa atggcgccga cacgcggaca aagcgaccac aaaaaacagg accaactcga       300
     aggacaaccc caagccgcga cccacaaaaa cgacaaaaaa cccggcacaa agacaccttg       360
     aggccttcaa cgacaaactc cgcaaggaaa ggagggatgc tatagaacac acccgcgacg       420
     aagctatgac aagccccagg aggggtgatg ctggtagccc gccgacaaca agtagagccg       480
     ccaaaactaa tttcaagaca aggacctaaa aattaaccgc cgatgggacc gaggacgtgc       540
     ataagcactt gcaaagagga ccccctgacg accacagcct aaacctggcg caacgagtac       600
     tggaaatgga aaagaaaatt gacacactta tggaactctt cttcaaatgc ttagaaaata       660
     acaaaaacct gaccacagca caccccatgt cctcctaaac ttctaagttc ctcgcaaaaa       720
     taagtagcac catgacatta aacataaaca acacacatac tatcaatacc cttaaaatag       780
     ggtattggaa ctcatgtgga gttaccaata aaagagacga actagaagct tacataaaaa       840
     aagagggtgt ccagatcatg ctggtaasag aaaccaagct agaacgaaat tctactatgc       900
     ttaacttcga aggcttccac acctacctcg cccaaaaccc caaaacaatt atcagccaaa       960
     ctgtccgaca cacctgtcta aatcccatcg aaacagactt tatacaaagt gctcccatag      1020
     ccctaatccc ctcaaatggc atccgtgcaa atatgacaat tgttgcccaa tctattgccc      1080
     gccagtttat aaatggaccc atgaaaattt ccacaaactc ttcagccact ttgaaacgct      1140
     gctggatggc aagtccaact ttatcctcag cggtgactgc aacagcaagc atagatgttg      1200
     gggaaactac tcttcctgcg caaggggtag gtcactaatg caagcaatca tggcaaacaa      1260
     actccttgac gtagttgcca ccggacaagc cacccatttc ccttttgaca gaagaaaaca      1320
     gccatccgcc ctcgacttcg ctatatgcaa gggcctccgc agacgaatca caaggacttt      1380
     ctcctctgat gacctcagtt ctgaccacct cccgatccaa attatccttg atctagaaga      1440
     agcaaaccta caactcaaaa aggtaagcaa ttctatatta aaaaggaaca caaacatgga      1500
     aaaattcaag agaattctgg aagataaaat gctgctaaat acggagatac ggactggaca      1560
     agacatcgat gactgcattg atatctttct caacaacata aaaactgcag ccaacgaagc      1620
     cacccccaaa aaccgcccct ttaccaaccc aagggaaaac tcccgaagaa gggaaaataa      1680
     cctcagtctg gacgaagcta ccactcggct tctagatgaa aaaaaggaat taaacaggat      1740
     tcttagagca gcaggaacgg aagaggctaa aaaatggttc aagtcagcgc aaaacaagct      1800
     ggcaaaagaa ataagaaaac tcagaacaag ccaaatcaac aatgaattac agctcatcga      1860
     cacaacagac agatatagaa tgcagaaact atggaaatgg accaacaatg tcaaaaaaca      1920
     gccgcaaccc atctggccac taaaaaagga cgatgactgc ataagtatga ggacagccag      1980
     cccctggacc agaacgcttg atgaaagagc cgaagccttc gcctcccacc tggaatcgcg      2040
     ttttaaagca aaccttagaa acagcattga ggacagggaa atcatcaaaa aagaactgga      2100
     caaatttaag tcactgaagc cacggataga aacgggcacc agcggactta aacctgtcac      2160
     tcttgccgaa ctggacctgc tgattaaatc actagaatct aagaaagccc cgggcgccga      2220
     caacattagc aataaagtca taagtaacct tccaaaaaaa gccaggatct accttatcct      2280
     tatctacaat aaaatactca ataccggcca ttttcctaaa aaatggaagc atgcatgtat      2340
     tactatgatc ttaaaacctg gaaaatcgcc ttctcttctt aattcctacc gacccattag      2400
     tctgctctct ggcctatcca aaatatttga acgcatcata ctaaaccgtc tatacaatat      2460
     cgaatccttt tctaaagcaa tcccaaatca ccaattcgga tttagaaaag gccacggggc      2520
     ggaacaccaa ctagccagag tcacacaatt catcttaaaa gcctacgagg acaaggaggt      2580
     atgctcagcc acctttctgg acatcacgga agctttcgat agagtatggc acgacggcct      2640
     gcttctcaaa cttaccaaac ttatccctaa acaactattc aatgtacttg aatcatacct      2700
     aacaggcagg accttccaag tcagaatcaa caacgaaacc tgctctagaa tcggcaccat      2760
     taatgccggg gtgcctcaag gtagtatcct gggaccagtc ctctactcta tatacacgtc      2820
     ggacatgcct ttccccatca ttaaaggata tatccgcaac atatcactgc ctgactacca      2880
     ccctaagaat attatcctcg caacctacgc agacgatact ataattatta gccgttcaaa      2940
     taatactcgg tccgcaatca acattaatca aacgtatata aacaaattct gcagatgggc      3000
     aaaaaaatgg gatattgcaa taaatggaaa gaaaacaggc cacgtcttat tttccctcaa      3060
     aaacatatca gaaaatgttc acaccacccc tattgttgat gggcaaagag ccatcaaact      3120
     ctgcaaacac ggctaccttg gagtgatgct cgaccgcagg ttgacatttg gagcgcacct      3180
     catcttgcta aaaggaaaaa tcatagctgc atataaaaga ttggaatggc ttttaggtaa      3240
     aaacagccac ctacctaaaa ggacaaaact actcctgtgg aagcaaatta tctcccccat      3300
     atggcactat gccattgcga tctgggggtc cctcacatca gccacccaaa ccaaaaaaat      3360
     acaaacccta gaaaacaaac tcataagaag gatcattaaa gcaaacagat acaccaaaca      3420
     atcagcaatt agggaaaagt ataaaataaa atctttcgaa gaagtatttg accaagccag      3480
     caaacgatac gccaactcta ttgccgacca tgaaaatcca ctaataaaag aactgctgac      3540
     aaaatccttt aagcccatta gactggcagc aagtagaact aggtatgtaa atcaatacac      3600
     aaaataccta ctgcccctcc tacaaaacat ccmaaagcct cctgacgaac ccacgtacaa      3660
     atcactatac agctacacgg ataaagagga actagaaata gtctctaaaa taagatacga      3720
     ctatagacag acccttccta ctcttctcca actggaggac gaagaaatgg aagcgagaga      3780
     ctgtaaagca gaggaggaaa ggaaggaaag agaaaaagaa gaaaggaaaa aagccctgga      3840
     gaaaggacca ccggatagat ggtgcgaatt actcataaac aaattcagca aaatgtacaa      3900
     aaaaggaatg atcaccagag aaagggtcat agagctaatg ctcggccaac cccccacagt      3960
     gatcaaactg gttatccctg actatgaacc ctaacaaamg tcgacacaaa ccgctcccca      4020
     aaaatgcagc tcattctaca aaataggaat aaacaggcta catggaagat tcttaaaatc      4080
     tacactaaag ccatggatgc gggttatttc actgaaacaa taatacttaa gcgccagcaa      4140
     agtgtcttca tctctatcct gatgacctgc aaaacccgga cgaagtatcc ctccgacgac      4200
     gcatccctgc tgaccccgac gaagcgcaag tgaaggatgt catccactag gactggcaaa      4260
     gaagtatcta gaagcagagg gacacgtgaa ggatcaacgt gcggcaaaaa catgatgaat      4320
     ctaagtagac tcattgcagc agcgcatgca taatgtcact tacctgaacc ttttgctgca      4380
     aatcccttga aatgtcctga aataacagct gcaatctccc cgaaaaccgt actcaatgac      4440
     aaaagacgac ccgacttgtc gcaatagata aactaacttt ttggcactta gaacacaaaa      4500
     aacatacaag gttttgatcc agtctcttta ttgggattcc cccacgtcct cacagaccct      4560
     aggcgtgttg ctgccgaccc ggcaaaagat cgaaatcgta acccctgaaa ttgacctttt      4620
     ttttccctta gaattaatat caacgaaatc tttgttaaag atcgaaataa tttaatcaaa      4680
     acataaaaca gagtattata taataatata taawaaaaaa ttcacaatgt tttgaagccg      4740
     tctcaacgtc aagaagccca ctcgatttta ttgacccttg gcgcggcmct gccgacccga      4800
     caaaaggtca aaatcgtgac ccttgaattt cgactttttc ctggtagcaa cgattatact      4860
     gacaatatcc ctgaaaaaga ataacagatc aataaaagct taaaactacg caacctacta      4920
     ctcccctact aggcgcaaca taaaacgaag atttggcacc taaaacagta aaaacctaaa      4980
     atgttttgat gtcgtttcca tgwtgggatg ccccctcgtc cttctgaacc ctaggtgcgc      5040
     cgctgctgac ccggcaaagg gtcaatctcg cgacccttga attcgacttt ttcctggcag      5100
     caacggtaaa cagacaaaat ccctgaaaaa ttataaaaca aattataaaa caaattataa      5160
     aagcataaaa ccacgactcg gcgaaatgaa waacgacgat tttggcacct aaaacattaa      5220
     aaacctaaaa tgttttkatg ccgtttccat gctgggatgc ccccccgccc ttmtgaattc      5280
     caagcgcggc gctgctgacc cggcaaaagg ccaaaatcgt gacccttgaa ttcgactttt      5340
     cctggtagca acggcatact gacaatatcc ctgaaaaaga acaataaatt aa              5392
//
ID   Jockey-3_Hmel repbase;    DNA;    INV; 5234 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-5234
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2033..4966
FT                 /product="Jockey-3_Hmel_1p"
FT                 /translation="PNYYLSMLKLPMAVNNNFRINPPDLRLARVKPRSLNI
FT                 GYFNANGLSTQMGLVRDFVTNRQLDLFLVQETFLRNCNRDPKIANYRTIRN
FT                 DRDGAKGGTVIFYRKTLHVIPLDPPPTLTNIEVSVCKVHMTGHPPTIIASA
FT                 YLSPSKSLLRSDLQTLLDMGDSVIIAGDLNCKSTRWNCNSTNRGGIELENI
FT                 YDLTTSRFEIIAPLTPTRFGPRGRPSILDIAILQGVSLRLRSIEVIPELDS
FT                 DHRPVIVKLGPDCPPVLPKTTITDWSKFAERLGNPDTEPTDDIPDRFDSVE
FT                 VVEAEINQLTDRLGSTLDECSREIPSNPEGHFKIPRDLRKLMRRKNIANRA
FT                 HDSFPSPANRAKLWRLQRQVRARFEDLRDESWDHRLSELTPSHVAFWQLTK
FT                 SFKNDTVVELPPLIRPDGTLASDDLEKAECLADNLESQCSPSEKPCDPIHV
FT                 AAVDTQVETWAPLPPAGEPIRPTSVEEVQDIIKRLKPKKAPGSDRISNKIL
FT                 KILPIHILTLLVAIFNTLLKECSFPDQWKEAIVIGIHKPKKPRTSPSSYRP
FT                 ISLLSSMGKIYERILLTRLQAAVVANDIIPPEQFGFRAKHSSIHQVHRLTE
FT                 FLLSRAKLMPSAAIFLDIAKAFDKVWHNGLIYKLQKTNVPDRLVHIIRDYL
FT                 SNRSFRYRVEGTLSSSRPVRAGVPQGSILSPLLYNLYTHDIPKTPGTNLAL
FT                 FADDTAVYTSGRVSVCIANRLQKSMDRIGQWLFQWRIEVNPDKSNIIYFPL
FT                 RRTDYLPHVRLLGKIIPEAKQAKYLGVILDSQLSFKAHITYVRRKAAYVLS
FT                 CLYPLICAKSKLSLRNKIRLYKACVRPIFAYACVVFAQTDLSRLQVIQNRF
FT                 LRNTTGAPWYMRNTDLHRDVKLDSVKEHCRKLSSSYFTKAESHPNPLVVNS
FT                 CNYAKRRPWDRRRPRDILTDDADPITKANDPKFVGRATHNRTHTRYAHRPR
FT                 RWRRGPSFTVAQSRLGARGARTX"
XX
SQ   Sequence 5234 BP; 1425 A; 1511 C; 1139 G; 1083 T; 76 other;
     gagttccaat ccgaccgcgg taccgccagg acgtctcaat gtccgcttgg catcgctttc        60
     gcaawmacca amaccaaaaa amccaaaaam cccaaaaacc aatccacgca cgcgcgcact       120
     mtcgrcctac gccaccctgc ahcaccaaga agacgaagag gaccgatcgg cgtcgtttgt       180
     tcggcgagcg gcgatctccg ttgttttgtg tagtgcagtg tagtgtgtta gtgtccatag       240
     gatttcacct ggattccata cccacgtgag tacttttaca cagtgttagc ttaagctagg       300
     tactcacccc ggccccacca ggccgagaca ttaggtcaaa gtaggcacac acccctcgcc       360
     wcggcggggg gtcaagttta gtcaaaatgg ttcggataga ctcggatagt ctacttaagt       420
     tcgccgcaga ccatatcccg dcatgtttct tydtggaaat aaccgcattc gtggaacgcg       480
     aaaaacgcca gcaaaagcag gaggacgaac cbgdggaggc cgacgccggc tcggatgagg       540
     acgaggcttc cgcaaacgac gcggagtccg agtccgagtc tgaggccgcg gaggccccct       600
     cgtcgtchtc vtcatcctct gagkcctcrg ccgacgagga agaaactycc ggtgtggagg       660
     atwaatgacg gtttcgagac cgtcaaatca aaatcggcca aacggaaggc ccghagatcg       720
     ccaggtactc cgccawcaac cccagccaaa cgcgccgcgc gcgcdbtaaa daccccctcc       780
     ccgcggtcct cacccccgcg taaaantagg gcacgcgcgc aggtagcnga aaagggtgcg       840
     caggtagaca aaaacggcyc cgacgccgaa atgachgaca agachgacaa tdcaahtght       900
     avhaataana atagcaataa taatarttcg atccccgcgt ccaactccgg cgacggctcg       960
     gtaccgctac cggccggcgc tcgtagggah aggttacctc ccccgatagt agttcaggaa      1020
     aggaaagcat gggacaattt acaattatgg atgttgtccm ataaagtgca gttcaattct      1080
     gccagatcma cagctcargr crttagartt yaggtrttaa caccyaamga ccacaggktc      1140
     cttacgrcsc accttagaaa ttmcaagata gggttccatt cctacgctct ggaggacgag      1200
     cgtcagttac gtgtagtcct caagggtatc ccttccgact tagagaccga atccgttttc      1260
     cgggacttaa aatcccaaaa tcthcccatt aaagcagtcc accgtatgta caatcagtac      1320
     actaagaaaa gctacgacat ggtcctagct gtcctagacc gcagccctga gggcaaacaa      1380
     attttcaata thaaatccgt ctgctcactc acgggcatta ctatagataa gccatggtct      1440
     cgtggcattc ccgggcagtg tcrccgctgc cagctctatg ggcattcygc caaaaactgt      1500
     cacgcaaaac ccaggtgcgt gaagtgytta gaaagtcacg cyactgctga ctgtccgcgc      1560
     aargtcccag acccggccgt acctcccagc tgygtcytgt gtgagaccca agggcacccc      1620
     gcaaattacc gcggatgccc taaggcccca cgcaggtccg gcggaaaggg cggcaggacg      1680
     cataaggctt cgatgccttc ccgtccagcg caaaacccgt ccggccctca gccactactc      1740
     caaccagccc ctcttccttc caccaaygcg tggaaaaaac ctctaccaga gacccaagcc      1800
     gcyaaggcct ccaatcccaa acccaagccc tccagggcca cttcctcygc ccgccagccc      1860
     cgtggggagg taacagaaca ggatagtatc gaagacgcga tcgacattgc gaccagcttt      1920
     ttagatatac tagataaaga cgaattattg gccttcgcga aaggcttagt agactcaaac      1980
     ggcgatccta aaagtcgact tcaagtavtt aagctcaaca gaaagcttat agccaaatta      2040
     ctacttgtca atgctcaaac ttccaatggc ggtcaataat aattttagaa tcaacccgcc      2100
     cgatttaaga ctcgcgcgag tcaagccgcg ttctctcaac ataggttatt ttaacgctaa      2160
     cggtctcagt acgcaaatgg ggctagtccg cgattttgtt acaaaccgac aactcgactt      2220
     atttctagtt caggaaacgt tccttagaaa ttgcaatagg gatcccaaga tagccaatta      2280
     ccgcactatt cgtaacgaca gagacggcgc caaaggcggc accgtcatat tttacagaaa      2340
     gacgcttcac gtcataccgc tcgatccgcc gccgacgctc actaacatcg aagtttcggt      2400
     ctgtaaggtt cacatgactg gacatccacc cactattata gcttccgcct atctctctcc      2460
     atcaaagagt ttacttagaa gcgacctaca gacactacta gacatggggg actcggttat      2520
     catagccggg gaccttaact gtaaaagtac caggtggaat tgcaactcca caaatagagg      2580
     aggaatcgaa ctcgaaaata tctatgacct gaccacctct cgctttgaga taatagcccc      2640
     cctcactccc actagatttg ggccccgggg ccgaccttca attctcgaca tagccatcct      2700
     gcagggcgtc tctctcaggc tgcgctctat cgaggtaata ccagagttag actcagacca      2760
     tagacctgta atagttaaat taggacccga ttgtcctcca gttcttccta aaaccaccat      2820
     caccgactgg tctaagttcg cggagcgcct aggcaatccc gacacggaac cgacagacga      2880
     catacctgac agattcgact cggtggaagt agtcgaggcg gaaattaacc aacttactga      2940
     cagactgggt agcactctcg acgagtgttc tagggaaatt ccaagtaatc cagaaggaca      3000
     ttttaagatc ccgcgagatc tcagaaagct catgagacgt aaaaacatcg ccaatagggc      3060
     gcacgattca tttccgtcgc crgcwaaccg cgctaaactc tggaggctcc aaagacaggt      3120
     tcgagcccgg ttcgaggacc tcagagacga atcttgggat cataggttat cagagcttac      3180
     gccatcgcac gtagcgttct ggcaattaac yaaatcattc aaaaacgaca ccgtagtcga      3240
     attaccgccg ttaatccgtc cggacggaac actagcctca gacgatctcg aaaaggccga      3300
     atgcctagcg gataacctag aaagtcaatg ctccccctcg gaaaaaccgt gtgatccaat      3360
     tcacgtcgcc gcggtggaca cacaggtcga aacgtgggca ccgttgccac cagcgggcga      3420
     acctataaga ccgacctctg tcgaagaggt acaagacatt ataaagcgcc ttaagccaaa      3480
     gaaagcccca ggatccgatc gcatctcgaa taagatcctt aaaattcttc cyattcacat      3540
     tctaacgctt ctcgttgcca ttttcaacac bctyttaaaa gagtgctcat tcccagacca      3600
     atggaaagag gcaatagtca taggtattca caagcctaag aaacctcgca catccccgtc      3660
     cagttatcgc cccataagcc ttctcagttc aatgggcaaa atatacgaac gtatcctcct      3720
     cactcgtctc caagccgcag tcgtggccaa tgacataatc ccccccgaac aattcggctt      3780
     cagagccaaa cactccagca tacaccaggt acaccgcctc acggaattcc tgttatcccg      3840
     agccaaayta atgccatcag cggcaatctt cttagacatt gcaaaagcgt ttgataaagt      3900
     ctggcacaat ggcttgattt acaagttaca aaagactaac gtacctgaca gactcgtgca      3960
     catcattcga gactacttat caaaccgctc atttagatac agggtagaag gcaccctttc      4020
     ctccagtagg ccagttagag ctggagtccc tcagggctcc atactatccc cgcttctgta      4080
     caatttgtac actcacgaca tccccaaaac cccaggtaca aacctagccc ttttcgcaga      4140
     cgacaccgcc gtctatacgt ccggccgtgt atcagtctgc atagctaaca gactccaaaa      4200
     gtccatggac cgcataggtc agtggctatt tcaatggcgc atagaggtca atcccgataa      4260
     aagtaacatc atttacttcc cccttcgtag gacagactac ctgccacatg tccgcctttt      4320
     aggcaaaata attcccgagg ccaaacaggc caaatactta ggtgtcattc tcgacagtca      4380
     actgtccttt aaagcccaca ttacttatgt tcgccgcaaa gcggcctacg tcctaagttg      4440
     tttgtatcca ctcatttgtg ctaaaagyaa actctcwctt agaaataaaa tccgactcta      4500
     taaagcatgc gtcagaccca ttttcgccta cgcctgtgtt gtgttcgcac agacagacct      4560
     tagccgwtta caagtaattc aaaaccgttt cttgcgtaat actaccggtg ccccgtggta      4620
     catgcgtaat accgatctcc atagagacgt caaattagat tcagtaaaag agcactgtcg      4680
     caagctctct agtagttatt tcactaaagc cgaatcgcat ccgaatccgc tggtggtaaa      4740
     ctcgtgtaat tacgccaaac gtcgcccgtg ggatcgccgt cgaccccggg atatcttaac      4800
     cgatgatgct gaccccatca ctaaagcgaa cgaccctaaa tttgtaggta gggccacaca      4860
     caatcgcaca catacacgct acgcacaccg tccccgccgg tggagacgag gtcccagctt      4920
     tactgtggcc caatcgcgcc tcggcgcgag aggagcccgc actcahtaat ccaatagggc      4980
     atcaagagcc ctccccagta ggctttggtc gaaccgatcg aagcaaagcc ccccactacg      5040
     aacggtgttc gcaagtcgcg gtccgagtct caaaggagac gcccttgcgc cactgtgttc      5100
     tcttttgttg gtaccttcca cggtagccat gccaaggtca gagctcgtct agctcggcct      5160
     ccccaagtcc ggtgacgctg tagaggccga tatggccaac agcatactgc tcaatcgaaa      5220
     aacgaaaaac gaaa                                                        5234
//
ID   Jockey-3_HMM repbase;    DNA;    INV; 3461 BP.
XX
AC   .
XX
DT   16-FEB-2013 (Rel. 19.10, Created)
DT   16-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3461
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2799-2799 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. likely 5' and 3' truncated. Only 3
CC   sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..660,519..986)
FT                 /product="Jockey-3_HMM_1p"
FT                 /translation="AQASLVPGHTSTTSAPAPTPAPKPRFPPLIVEVLPDW
FT                 ALHFKTLRDKLGHAPNARPFGRGVRFTPGSEDEYRIIQRYLSELEKTVAIS
FT                 WFTYALPSEXSRKVAIRGLPATTVPEDIAEALAQLGYQAEYVRPIKARMGR
FT                 PGCIFYMPGIKIEPWRSXRGPAQCHRCQGFRHSSHGCHRRLACVRAAKSTL
FT                 HATAHGLWRFQPHASIAGGTSRKSLSVPAIPWVPSALGLRAGGEEHPARDC
FT                 PRPLEVPATCINCGGHIPQITQRARNIELRNKRAGTVALTQLAPDRRTRTY
FT                 VPLAPNMVATDTQANSLMAPANPPTKTGSRRNKKRGGKRSRQMKDRQEDAR
FT                 SAPAQRSSPLPLQPDLQYLHPRRSRPTPKGLHR"
FT   CDS           join(1023..1601,1268..3148)
FT                 /product="Jockey-3_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SSWLLASFKMPDGLRAIYWNAAGLRGRTHFLRLLLRQ
FT                 QRVDVAAICETHLSPSDSINLPGYHTXRLDAPPDNIRRGLLLAVRRSIVHQ
FT                 PTPDTNTKSFQSLGAEIRAKYFASSPSTAPQHHPSTSAKSEGSWTAPLLRL
FT                 LPXTGTPSTRHGDATQCATTDAAFSRTPIGMGTWWRAQMSLPTSPIPVPIF
FT                 RAQEIYCASTDTGHQHQIVPVPGRGNPGEILRFFAIYRPPASSLNLSEVRG
FT                 IMDSATSTIAAGDWNAKHPAWRCHTMCHNGRRLFEDADRHGYVVEGPDEPT
FT                 HFSYTSTHLPSTIDLVVHRGMDDHGLTLETLPDAYGSDHLPVLVTALGKLT
FT                 SARRPPHGGLIHWPRFEALVHSKIPLRDEPLDSPSSIDRLEEKITSTIRDA
FT                 ISEATAPPKLRTLPPIPKRLSDLIAKKRKIRAEWQKTREPATKTKLNSYIE
FT                 RIRAELESVAAERWEKRIEEASEDQPSLNKLCRLVTKKAPPVRPLLHPDGT
FT                 LCFDSQGRAEILAAHLESQFLPNPSQREEAHNNLEAAVQQKIRSPPDPDQP
FT                 PPFFSPSRVKKAIFSLKPKKAPGRDTVTNAALRHLPNRAIAALTRLLNAIL
FT                 RLGYFPQAWKEGLVVMLPKPGKNPRLPESYRPITLLSATSKLFEKLLLPLL
FT                 QVHLQPRPEQFGFRSEHSTTLQVARVLHYASAAANRKEVAAVAFLDVAKAF
FT                 DRVWHSGLLYKVLQAGVPHHLVRILAEFLHGRSFCVRVDDAISSRHPSLAG
FT                 VPQGSILSPTLYTTYTDDIPVGQDAMLALYADDIALLTKSLNPRPPLRNFS
FT                 ALWTFYRNGWRSGGWLLM"
XX
SQ   Sequence 3461 BP; 855 A; 1107 C; 881 G; 607 T; 11 other;
     gcccaagcct ctctagtgcc agggcacacc agcaccacgt cagcaccagc accaacacct        60
     gcaccaaaac ctcgtttccc tcccctcata gtggaggttc ttcctgactg ggcgttgcat       120
     ttcaaaacgc tmagggataa attgggccac gcgcctaatg cacgcccgtt cggaagaggc       180
     gtgagattca caccgggctc ggaggatgaa taccgcataa tacagcggta tctctccgag       240
     ctcgagaaga ctgttgccat ctcttggttc acgtacgcac taccgtcgga aawgagccgg       300
     aaggtggcca ttcgtggact gcctgcaacg accgtacccg aagacatcgc cgaggcgctg       360
     gctcagctgg gataccaggc agaatatgtg cgcccgatta aagcaaggat gggaagaccg       420
     gggtgcattt tttacatgcc aggcataaaa atagaacctt ggagaagcaw aaggggcccg       480
     gcacagtgcc accgctgcca aggctttcgg cactctagcc atgggtgcca tcggcgcttg       540
     gcttgcgtgc gggcggcgaa gagcaccctg cacgcgactg cccacggcct ctggaggttc       600
     cagccacatg catcaattgc ggggggcaca tcccgcaaat cactcagcgt gcccgcaata       660
     tagaattgcg taacaagagg gctggcaccg tcgccctgac tcagctggca ccagaccggc       720
     gtaccaggac ctacgtccca ctggcaccaa acatggtcgc cacagacaca caggcgaact       780
     cactgatggc accggcgaac ccacccacca agacaggaag ccgcagaaac aagaagagag       840
     gaggcaaaag gagcaggcaa atgaaagaca ggcaggagga tgcccgctcc gctccagcac       900
     agcgcagcag cccgctcccg ctgcagcccg acctccagta cctacatcca cgacgctccc       960
     ggccaacacc caaaggcctg cacagataac cattgacagg gctattgaca ccmtaaaagt      1020
     agtcctcatg gctattagcc tcattcaaga tgcctgacgg acttcgagcc atctactgga      1080
     acgccgcggg gttacgcggg aggactcatt tccttcgcct tcttctccgc caacaamgag      1140
     tggatgttgc agctatatgc gaaactcatc tctccccctc tgactccatt aacctacccg      1200
     ggtaccacac gcwgcggctg gatgcccctc cggataacat acggagaggc cttctattgg      1260
     cagttaggag atctattgtg catcaaccga caccggacac caacaccaaa tcgttccagt      1320
     ccctgggcgc ggaaatccgg gcgaaatact tcgcttcttc gccatctacc gccccccagc      1380
     atcatccctc aacctcagcg aagtccgagg gatcatggac agcgccactt ctacgattgc      1440
     tgccggwgac tggaacgcca agcacccggc atggagatgc cacacaatgt gccacaacgg      1500
     acgccgcctt ttcgaggacg ccgatcggca tgggtacgtg gtggagggcc cagatgagcc      1560
     tacccacttc tcctatacca gtacccatct tccgagcaca atagatctcg tggtccatag      1620
     gggaatggat gaccatggac tcaccctaga gacactaccc gacgcctacg gctccgacca      1680
     ccttccggtg ctggtgacag cacttgggaa gctgacttcg gcgaggagac caccgcatgg      1740
     aggcctaata cattggccgc gatttgaagc cctcgtgcat agcaaaatcc ccttgcgcga      1800
     cgagcctctt gacagtccct ctagcattga ccggctggag gaaaaaatca ccagcaccat      1860
     tcgggatgcc atcagcgaag ccaccgcccc gccgaagctg aggacccttc ctcccatccc      1920
     caaacggctc tccgacctca tcgcaaagaa gaggaagata cgagcagagt ggcagaaaac      1980
     acgcgagcca gcgacaaaga ccaagctgaa tagctacata gagcgcatcc gcgcagagct      2040
     tgagtctgtg gctgcggagc gttgggagaa gcgcattgaa gaggcaagcg aggaccaacc      2100
     ctcgctcaat aagctgtgcc gtctcgtcac gaagaaagcc ccgccggtga gacccctatt      2160
     gcacccggac ggcacattgt gcttcgactc gcagggtaga gcggaaattc tggccgcaca      2220
     cctggaaagc cagtttctac ccaaccctag ccaacgtgaa gaagcccaca acaacctgga      2280
     agcagcagtg cagcaaaaaa tccgaagccc gcccgatcca gaccagccac ctccattctt      2340
     ttctccgtcg agagtgaaaa aggctatttt ctcacttaag cctaagaaag caccggggag      2400
     agatactgtg accaacgcgg ctctacgtca cttacccaac agagcaatcg cagcactcac      2460
     cagactgctc aatgccatcc tccgcctggg atacttcccc caggcgtgga aggagggcct      2520
     agtggtaatg ctgcccaagc ctgggaaaaa tcctcgcctt ccggagagct accgaccaat      2580
     caccctcttg agtgcaacat ccaaactctt cgagaagttg ctgctcccac tactccaagt      2640
     gcatctacaa ccgcgccccg agcaattcgg ttttcggagc gagcactcca cgacccttca      2700
     agtcgcccga gtgctccatt atgcctcagc cgcggccaat agaaaggaag ttgcagcagt      2760
     ggccttccta gacgtcgcga aggccttcga ccgcgtatgg cactcaggat tgctgtacaa      2820
     ggtccttcaa gctggcgtcc cccatcacct cgtacgaatc ctggccgaat ttctccacgg      2880
     cagaagcttc tgcgtgaggg tcgatgatgc catctccagt agacatccaa gcctcgccgg      2940
     ggtcccccag ggcagcatac tgtcaccaac gctgtacacg acatacactg acgacatccc      3000
     agtgggccag gacgcaatgt tggccctcta cgcggacgac atcgcgctcc tgaccaagtc      3060
     actaaaccca aggccgccgc taagaaactt cagcgctctc tggaccttct accggaatgg      3120
     ctggcggagt ggaggctggc tcttaatgtg acgaagactc aagcactcgt gtttgggggt      3180
     caccgaagaa accctcctcc gctgacaata cttggaacgg aggtcccgtg gaagaagaac      3240
     gcaacctacc tgggcgtagt cattgacagg caactgacaa tgascgccca ggtgaaaaaa      3300
     gccagaaatg cagctagagc cgctctgaat ttgttgcggc cagtattcag atctcgcctc      3360
     ccactgcgca caaagctggc catatataaa acctacgtca ggccacatct gacgtacgct      3420
     gctccggcct ggcttgccct tgccagccca csccmmcgcc t                          3461
//
ID   Jockey-3_LMi repbase;    DNA;    INV; 4585 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4585
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3149-3149 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1610..3712
FT                 /product="Jockey-3_LMi_1p"
FT                 /translation="LPPTLTFLPVRPLNSGGGVSSSPPRSGATSFPFPAQP
FT                 ARKQHHTRRCLASPNLLGRITADVLDLIGSDHAPVLLTLDHRPRPARAPRP
FT                 MPPPKLVHDYSRADWDAYRRSIDTSVASHPLPLHTPADIDHASSFLQQTVA
FT                 DAVHAHIPTRAIYPHRPTLPPQAVLLLRESRRLYRSFLRTRDRDTLQRHRQ
FT                 LQRHIRNLLSAKKRRDWRQTCTRLNSMLPVNSSKYWHAFRRLTGSHSSPHY
FT                 PLLHDDHPFPDNASKAEHFASYLSEVFSIPDDPLFDYSLFPDVHERTDTSS
FT                 PPLAPGFQYLDHIPPSELNTPITARDIIDTLRTKRNTAPGHDRLTYRHLRA
FT                 CPPSFHEVLATLYNVILFTGFYPDLWKTSRILMFLKPDKPPSQTSSYRPIS
FT                 LTSMFSKVLETILSRRIHQHLHRHQFLPLSQCGFRPSFSADDQLLRLTHLL
FT                 SVQLNSHRSAIFVSLDIQKAYDRVWHSGLLFKLQFYALPINYVRLIASFLT
FT                 RRPSYVTVCNSDSRLFYPSAGVPQGSILSPLLYLIYSADMPQPQPPVYLLQ
FT                 YADDTAFLALAPSLARSQFLLQSHLTEFASWCNRWLLSVNPEKSQAIIIGR
FT                 TTLPSASLTSTYPPQPSHPPHPHSQIPRPNPRSLPLLDPTPPHCPPESPLP
FT                 PQSPQTPHRPDMGSQPLHHPXHLPLPHASCPLQFPSRLDFRSPFLLQNPPN
FT                 P"
XX
SQ   Sequence 4585 BP; 839 A; 1980 C; 686 G; 1072 T; 8 other;
     cgccacaccc ctcgacccgt cccgtctttc tccacctcca caggcgcccg caagaaaact        60
     gtcaaagcag aagcgcggat cccgctcctt ctgcctccaa gaagactcct cctcctcctc       120
     aacccgacgc catggagact gcacccatcc ctccccaagc ccagccagac ctgtacacct       180
     acctcctctc ccacccagaa ccccgtttcc tcgacaacca gaccctctcc cttgaactca       240
     ggaaatactt cccagctgct cccatcgccc agctcatccc ccgtagggac tctgtcctca       300
     ttaaatcgcc cagccccacc ttccacactg acatgctcca gtgcctccct gccatccacc       360
     tcggccctca caccaccctt actccatact acacctcttc ctctccccgt caaccccttc       420
     ctccccacca cccgcccacc ctcaccgccg tgataaccaa acttagcccg ggaatcacgg       480
     aggaggaggt gttgggccaa ctcaactccc atcccgatat atccatccgg tccgccaagc       540
     ggattcacaa tgccactggt cctacatacc tgatgcggat ctttactgag tccgcatcat       600
     ccatcgatcg cctcctcctc aagggggcgc tcatctatga ccgccgccac aaggtggaac       660
     cttcccgctc cccaccccag tcctaccgct gtgccaggtg tcttgtttac aacgaccacc       720
     tgacacagca ctgccacaac cctcctacct gtccccactg caagtcctct cacctccaca       780
     agcactgccc aaacctcgcc tcccctcctg tctgcaacac ctgtggtggc ccccacccta       840
     cctactccta taagtgcaaa tccgtccctg ctcccaccaa tccagaactc accatccccg       900
     tccatcccat cgaccctccc ctgcacccca acaactccct ctgccccccc tcccaccatc       960
     gaggacgtca tctgctttgt gaccactgtc ctccaaaaca tccatccctt ccagcgtcct      1020
     cataccctcc agcagatcgc cctcgccgcc cgttccgtct ttcaacttga gacattcgcc      1080
     accttctccc gagcccactc ccacttcaca ttctcccggc aggttaccct cgtttaagca      1140
     caccctaccc tttttccgtc gcccccttcc ttcccctctt cccttccctt ttcccacttc      1200
     cccatagacc cctatggcaa gcccttccta taccttcctt tatcataatg tacgctccct      1260
     tcccaccaac aaacaccttc tcatgcatac cctctcccac caccgcgtgg atgccttcct      1320
     cctcaatgaa acgttccttc aaccccgtcg tcctatcagc accgctccct acctcctcca      1380
     ccgcacagat ggcccccccc cctcgcccgt ggcggagtgg cgataggcca cctmcgccat      1440
     caccccgtcc ggctccaacc cctcctcaat gatcccaccg agcacttgat cctcagcctc      1500
     ttcctcccat cccttacagt caccctagcc accatctata ttcgcagtac cgctcccctc      1560
     ccgtatgcct tcctctccca catcgaccgc tccttcacga cctatgtgat tgccgccgac      1620
     cttaaccttt cttcccgtcc gcccgctgaa ctccggcggt ggcgtcagtt cgtcaccacc      1680
     tcgctccggg gcgacgtcct tccccttccc cgcccaaccc gcccgaaagc aacaccacac      1740
     ccgacgttgt ctggcgtctc ccaacctcct tgggcgcatc acggcggacg tccttgacct      1800
     tataggcagt gaccacgccc ctgtcctact cacccttgac caccgccccc gccctgcccg      1860
     cgctccccgt cctatgcccc ctcccaaact tgtccacgat tattcccgtg ccgactggga      1920
     tgcctaccgt cgctccattg acacctcggt cgcaagccac ccacttcccc tccacacccc      1980
     cgccgatatt gaccatgcct cctccttcct ccagcagacc gttgctgacg cggtccatgc      2040
     ccacatcccc acccgggcga tatatcctca ccgtcctacc cttcctccac aggccgtcct      2100
     tctcctccgc gaatcccgcc gcctgtaccg ctccttcctc cggacccgtg accgggatac      2160
     actccaacgc caccggcaac tccaaagaca catcagaaac ctcttgtccg cgaaaaaacg      2220
     ccgggactgg cgccagacat gcacccgcct caattcgatg ctccctgtca actcctccaa      2280
     gtactggcat gccttccgcc gccttactgg cagtcactcc tccccccact acccgcttct      2340
     ccatgatgac catccttttc ctgacaacgc cagtaaggca gaacactttg cctcctacct      2400
     ctccgaagtc ttttccattc ctgacgatcc tctctttgac tattctctct tcccggacgt      2460
     ccatgagcga accgatacct cctctcctcc gctcgcccct ggcttccagt acttggacca      2520
     catccccccc tcagaattga acacacctat caccgcccgt gacataatcg acactcttcg      2580
     cactaaacgc aacaccgccc ccggtcacga ccggctgacc taccgccacc tccgggcctg      2640
     ccccccctcc ttccatgaag tccttgccac cctctacaat gtcatccttt tcactggctt      2700
     ttaccctgac ctgtggaaga cctcccgtat tctcatgttc ctcaaacctg acaagccccc      2760
     atcccagacc tcatcctacc gtcccatcag tcttacctcc atgttcagca aggtcctgga      2820
     aaccatcctc tcccgtcgta tccatcagca cctccaccgc caccagttcc tccccctctc      2880
     ccaatgtggc ttccgaccct ccttctctgc cgacgaccag ctccttcgcc tgactcacct      2940
     cctctccgtc cagctcaact cccatcgctc cgcaatcttt gtctccctcg acatccaaaa      3000
     agcctacgac cgtgtatggc attccggtct cctcttcaag ctccagttct acgcccttcc      3060
     tattaattac gtccgcctca ttgcttcctt cctcacccgc cgcccctcct atgtcactgt      3120
     ctgcaactcc gactcccgtt tgttctaccc ctctgccggg gtgccccaag gctccatcct      3180
     ctctcctctc ctttatctca tctactctgc cgacatgccc caaccccaac ctcccgtcta      3240
     tctcctccaa tatgctgacg acaccgcctt cctagccctc gccccctccc ttgcccgctc      3300
     ccagtttttg ctccagtccc acctcaccga gttcgcctca tggtgtaacc ggtggctcct      3360
     ttccgtcaac cctgaaaaat cccaggcaat cattataggt cgtaccaccc ttccttccgc      3420
     ctccctgact tctacctacc ctccacaacc gtcccatccg ccacaccccc actctcaaat      3480
     acctcggccw aaccctcgat cgctccctct cctggacccc acacctccgc actgtccgcc      3540
     agaaagccct ctcccgcctc aatctcctca aactcctcac cggccggaca tggggtctca      3600
     gcccctccac catcctmtac acttaccgct ccctcatgcg tcctgtcctc tgcagtttcc      3660
     atcccgcctg gatttccgct cccccttcct attacaaaac cctccaaatc cttgaacgcc      3720
     acgccctccg cctcgcctac cgtatccggc tcccctcccc cacgcggatc ctatatgamc      3780
     ttatcccatt tccccatctc ctcaatacct cgaacacatc cggatcctat acaccaaccg      3840
     caagatagac tcccacaacc ccctggtata ccccatcctc accaatcccg ggcctctgcc      3900
     acgcctttac cgctgcgtcc ctccctccct ccacctccaa accctccaca tcctttccca      3960
     gggtaacttc cgccaactcc cctccccgat gacgccctcc gtcctgaaat atacccatcc      4020
     taccaaccct gatcccctcc cgtggatgaa gcgccccctc tcccctcccc ctccctcccc      4080
     ccgcttggct attcccttcc tgccctggag tccctacgcc ttccccgccc tctctcctcc      4140
     cccctccccc gcacttccca ccctcccccc tccacacctg tggggtcctg caccatcagt      4200
     tttaacagtg catcgtccag tgttgtgtgc aaagtgcttc agtgtatttt atctgcgtcc      4260
     gccgcgcaca gacaagtgtc gcatcgttcg kttttacatt gtctccgtgt gctckccgtc      4320
     ctgttttgat gtcatactgc atgtttttaa tttcaccgtg gctcatagtt ttaactgact      4380
     gtatgtgttt tattcmtctg tcaaaatgta aagtcttcaa ttttgtcttc ttatctatgt      4440
     tttaattcgc cattgtttta actscatctc atgttttaag tcttcatacc catgtttttc      4500
     tctcggctga agagcagcac gaaatgctgc tgccagccta ctggcatgta tatgctggtt      4560
     taaaataaca ataaagaaaa aaaaa                                            4585
//
ID   Jockey-3_RPr repbase;    DNA;    INV; 4606 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4606
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3468-3468 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           635..1765
FT                 /product="Jockey-3_RPr_1p"
FT                 /translation="CCLSASGHDHPVSTSNGVQQSPCFITANPFAPLAINI
FT                 DEENNIIEQEKEKTSKPPPIFIKNITNYVGMCRVLTSLVGDNNFSCKARAS
FT                 DTMVTACTVEGYRTIVKYLMSQKADYHTYQLKEDKPFRVVLRHLHHTTPVT
FT                 IIKEELEKLGFSVKNVTNVISTTTKIPLPLFFVDLHQGPNNEEIFSLHSLL
FT                 YTRIKVEEPFKKRLIPQCKRCQEFGHTKSYCNHFPRCVKCAGPHWSTECVK
FT                 PREEPAKCANCQANHPASYLGCNTHKELQRLRRGSPVTNRRNQPSPTSRPS
FT                 DFPPITEPPSQQISTPSPLAHSSKTYAQATAESHKPSTSHFVPPPPAATDI
FT                 TSLLTTFLSDFKTMISPLITLLTTVVTQILPKMS"
FT   CDS           1699..4455
FT                 /product="Jockey-3_RPr_2p"
FT                 /translation="NNDQPTDNSPYYSSHPNSAQDVMNTPSKQQSLLFLLW
FT                 NANGLSAHKDELDLLLHNKRIDIALITETHFTSTTYFYIKDYIIYRTDHPA
FT                 DRPQGGTAILIRRSLSHYVNPSSPTDSLMSTSVSLNILPLQITIAAVYCPP
FT                 NKTISQNDFLSFFQSLGSHFLAGGDYNAKHQQWGCRVTNPRGRTLLNSLST
FT                 SSYSVISPSNSTYWPTSPRKSPDILDIFISSRVLPSSCDISTTFDLSSDHS
FT                 PVLLALNSQPTFNSSSPSLITGPTNWDLFRNIVDKQIDLRTALKTAEDIDV
FT                 AVDQLTKTIQQAAWTATSPPKPRKAPQNILLPLNLRTLLTEKRKARARWQR
FT                 TRYPSEHRRLNQLTRLLKRELYKLKSDIYSQYTSSLTTSDKSLWFCTRKIL
FT                 AYKDCSPPLLHDNSTWAKTDQDKANLFATHLSNVFIPHPDMNDQLHELNIE
FT                 EDLDSPLQLTLPPKAFNPSDVKYIIKQLPTKKSPGYDLITSNILRNLPKSG
FT                 ILFLTYIYNAVLRTTYFPMLWKYSIVKMILKPNKPAQQPSSYRPISLLPVF
FT                 GKILEKLLLRRLIPIIEDLLPEHQFGFRAFHSTTQQLHRVVDTISSSLERK
FT                 QYCSGVFLDVAQAFDRVWHSGLLYKLKNHLPYTYYLILKSYLTDRYCRVRQ
FT                 GQALSSFIPIKAGVPQGSILGPFLFLIYTADLPLSQNTIVSTFADDTAILS
FT                 SHSDPVQASQNIQTHLKLLETWFRKWKIKINEQKSVNITFTLRKSASPPVX
FT                 LNGVTIPPADAVRYLGLYIDKRLTWNPHTRLKRQDVNRRYKLLTRLLDRRS
FT                 KLDXNHKLTIYKTLLRPIWTYGAEVWGSTKPSNSKRLQTLQSKILRKILNA
FT                 PYYISNLTIHTDLHIPFVTDLIKSRYRXFHSLLALHPNPLVQQLSSPXLPD
FT                 NPPRRLKRKWPRDLL"
XX
SQ   Sequence 4606 BP; 1456 A; 1194 C; 694 G; 1233 T; 29 other;
     gatcagctgt gatgtgtgtg ctagtaatca ttacaaaaag ttttgctcgt agatatttat        60
     ttaaaaatta gtttttatcg tcttagtgcg gtcttaaagt gaactagttt ttctctgtag       120
     tgtttttcct acatggaatt caaactaaag agcatgtgag actctcattt aaatttaaat       180
     ttttctagaa aactattatt ataaacataa ccttaacttg actctttgtt taaaactttt       240
     tataattact tgtgtatata atcttagtta tttctattwt tgtatttgta aaaacaaaaa       300
     gaaacatttg attaacatta ttatttctta ttattaaact tctttcttta ctttattcct       360
     taatcaaaac ctwaaccata tcctttgtgt ttttcttata aagaagtaaa gcaaatcttt       420
     aattmattaa attaaagatg agcstaagcg atctagatca agacggtcac tctcacatga       480
     gtgatgacgc ctcttcaatt gcatcctccc aggtcactca taaaaggaca gctctcaatg       540
     ccagtcctcc aaataaaaag aagaagagcc gcaaagttaa atcaacaaaa atacgcgaac       600
     catccaataa accaactttg ccttcatcag ttgatgctgc ctcagcgcca gtggacatga       660
     tcatcctgtc tcaacaagca atggtgtaca acagtcaccc tgcttcatta ctgcaaaccc       720
     gtttgcacca ttagctatca atatcgacga agaaaataat atcattgaac aggaaaaaga       780
     gaaaacatca aaaccgcctc caatatttat taaaaatata accaactacg tgggaatgtg       840
     tagagtactc accagcttag tcggagataa taacttctct tgtaaagcac gagctagcga       900
     caccatggta accgcctgca ctgttgaagg gtaccgaaca atcgttaaat acctaatgtc       960
     acaaaaagca gactaccata cgtaccaatt aaaagaggac aagcctttca gagtggttct      1020
     ccgccatctc caccatacca cacccgtcac tattattaag gaggaactgg agaaactagg      1080
     tttctcagtc aaaaatgtga caaatgtcat aagtactact accaagattc ctctaccttt      1140
     gttctttgtg gacttacatc aaggtcccaa taatgaagag atcttctcac ttcacagtct      1200
     cctttacacc agaatcaagg tggaagaacc ttttaaaaaa cgactaatcc ctcaatgcaa      1260
     gagatgccaa gagtttggac ataccaaatc ctattgcaac cacttcccaa ggtgtgtgaa      1320
     gtgtgcagga ccacattggt ccactgaatg tgttaaaccc cgagaggaac cagcaaagtg      1380
     cgccaactgc caagcaaatc atcctgcaag ctacctcgga tgcaacaccc acaaggaact      1440
     gcaacgactc agaagaggat cgcctgtcac aaacagaaga aatcagccat caccaacatc      1500
     caggccaagc gattttcctc caattactga gcctccttct caacaaattt caactccttc      1560
     cccattagct cactcgtcca aaacctacgc tcaagccaca gcagaaagcc ataaaccttc      1620
     gacttctcac tttgtacctc ctccaccagc agcgactgac atcacctcac ttctaaccac      1680
     tttcctcagt gactttaaaa caatgatcag cccactgata actctcctta ctacagtagt      1740
     cacccaaatt ctgcccaaga tgtcatgaac actccatcaa aacaacagtc tctcctcttt      1800
     cttctctgga atgccaatgg tttgagcgcc cacaaagacg aactggacct tttactgcac      1860
     aataaacgaa tagacatagc actcattaca gaaacacact ttacgagtac gacttacttt      1920
     tacattaagg actacataat ctaccgaaca gaccatcctg cagaccgacc tcaaggtgga      1980
     acagcgattc tcattcgtcg atctctatca cattacgtga atcctagctc tcccactgac      2040
     tctttgatgt ctacctccgt ttctttaaat atcctacctc tccaaatcac aatagcagca      2100
     gtatactgtc ctcccaacaa aaccatttct caaaatgact tcctttcctt tttccaatct      2160
     cttggttctc actttctagc gggcggggac tacaatgcaa aacatcagca gtggggatgt      2220
     cgtgtcacaa acccacgtgg acggactctt ctaaactcac tatcaacctc ttcctattcc      2280
     gtaatttcac cttctaattc cacgtattgg cctacatctc cacggaaatc accagacatt      2340
     ttagacattt tcatwtcatc tagagtactt ccttcctctt gtgacatttc tactacattt      2400
     gacctatcct ctgaccactc tcccgtttta ctggctttaa attctcaacc caccttcaat      2460
     tctagttctc cttcacttat cactggaccg acaaactggg acctcttcag gaatatcgtt      2520
     gacaagcaaa tagatttacg cacsgcctta aaaactgcag aagacataga cgtagcagtc      2580
     gaccaactta ctaaaactat tcaacaagca gcctggacag ctacctctcc tccaaaacca      2640
     agaaaagcgc cccagaacat attactgcct ctaaacttaa ggactctact gacagagaaa      2700
     aggaaagcka gagcaagatg gcaacggacc cgatatccat ccgaacatag acgactaaat      2760
     caactaacga gacttctcaa acgggaactg tacaaactaa agtcagacat ttacagtcaa      2820
     tacacatcat ccttaacaac atcagacaaa tctctttggt tctgtactcg caaaattctg      2880
     gcatacaaag actgttctcc tcctctactg catgacaact ccacctgggc gaaaacagac      2940
     caagacaaag ctaatctctt tgccactcac ctatctaatg tatttattcc acatccggac      3000
     atgaacgatc agctgcacga actaaacatt gaagaggact tagactcacc cctacaactc      3060
     accttacctc ctaaagcctt taatccctca gacgtaaagt acattattaa gcaactaccg      3120
     actaaaaaat ctcctggcta tgatctcata actagtaaca ttttacgcaa cttaccaaaa      3180
     agtggtattc tctttctaac ttacatctac aacgcagttt tacgaacgac ttactttcca      3240
     atgctctgga aatactccat agtgaaaatg atactgaaac ccaataaacc tgcacagcaa      3300
     cctagctcct accgtccaat aagcctttta cctgtttttg ggaaaatact ggagaagctt      3360
     ctgctaaggc gtctaatccc tataatagag gatttgctgc ctgaacatca atttggtttc      3420
     cgcgcatttc attcaacaac tcaacagctg caccgtgtgg tagataccat atcctcttcc      3480
     ttggagcgta aacagtactg ttcgggtgtc tttctcgatg tggctcaggc ctttgatcgg      3540
     gtctggcact cgggcttact gtacaaactc aaaaatcatc ttccttacac ctactatctg      3600
     atcttaaaat cttatctaac cgatcggtac tgccgcgttc gtcaagggca ggctctctca      3660
     tcctttatac ctataaaagc tggagttcct caaggaagca tactgggccc tttccttttt      3720
     ctaatataca ctgctgactt acctctttct caaaatacaa tagtttcaac attcgctgat      3780
     gatactgcta tactttcatc tcactccgat ccggtgcaag ccagtcagaa tattcaaact      3840
     cacttaaagc ttctcgaaac ctggttccga aaatggaaaa ttaaaattaa tgaacaaaag      3900
     tcagtaaaca ttacgtttac tctaagaaaa tctgcgagtc caccagttcw actgaacggt      3960
     gtaacgattc ctccagctga cgcagtacga tacttaggac tgtacattga caagagactc      4020
     acctggaacc cacatactcg actgaaacga caagacgtga acagacgcta caagctactt      4080
     actagactac ttgaccgcag atccaaactc gacktgaacc acaaactgac watttacaag      4140
     acmctgttaa gacccatatg gacatacgga gcwgaagtgt ggggctcaac caaaccctct      4200
     aactccaaac gcctgcagac actacagtcm aaaatcctam ggaaaatcct gaatgctcct      4260
     tactacattt ctaaccttac matacacacc gacctwcaca tccctttcgt cactgaccta      4320
     ataaagtctc gctaccgcaa mtttcacagc ctcctagctc tccatcctaa tcctcttgtc      4380
     caacaactct cctctccwma ccttccmgac aatcctcctc gwcgmctgaa gcgaaaatgg      4440
     cctagagatc tgttgtgact aaatcattgc gaaggagttt cgccagtggg tgattgctcc      4500
     aaccatgwcw twwcaagwga actgaaccag taagatcakg tttacttggt gcaacaattg      4560
     ttgcagttgt aaatacamaa ataaagtgaa aaaaaaaaaa aaaaaa                     4606
//
ID   Jockey-4B_DMo repbase;    DNA;    INV; 6366 BP.
XX
AC   .
XX
DT   30-SEP-2020 (Rel. 25.10, Created)
DT   30-SEP-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4B_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6322
RA   Bao W.;
RT   "Non-LTR retrotransposons from the genome of Drosophila
RT   mojavensis.";
RL   Repbase Reports 20(10), 3190-3190 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..1914
FT                 /product="Jockey-4B_DMo_1p"
FT                 /translation="MPRGYTADDGEEDMDVEVELLIDSQPLAPAPTPLKVP
FT                 VKKSVVTARPTTSRAAAQQLKAKPSTSAESMVAEYLAAKNAMQSATKPLSS
FT                 ERAAKRTAEKGDSPKKKTAQLGAVVLDGSDEDCQQIDDYIRTARTEDTQRE
FT                 ATCLANKVCTAAKMQVMPPNAAAAAAISAAAVTAAAAATTTGASHAQPSAK
FT                 PAPLFIANVTDIMPLLIRLDDAIGQDNYSTKPAANHGIRVQCKDVATHRKL
FT                 VKYLDANSIENYTFQLKCERGYRAIIRHLHFSTPDHYIREQLAKLGHEVRF
FT                 LRGIKSRFSKEPLDLFEVELAASANNAELLQITAIGNQRVKIERPYKTNEI
FT                 AQCHRCQKFGHTKNYCRRPFACVKCGANHASTDCGKQKGDQTPAKCANCSG
FT                 PHAASYKGCPAYKEACKKRENESATQLAKVISNLAKPAATTAAQSSRANMP
FT                 NMSNMPNLLQQAPPQSRPQTVSAGPSYSAALRAGLQFAQPVGPAAISSKQR
FT                 QSRQKATKVSQQQQQQQQQQQQQQQQVRLPRQASAQRPPQPKRSRSLSTRR
FT                 RHQLPLDGGAHPISGGVHYQRFEQPINANMPSMPVQVSSRLEAKLDKLIEM
FT                 MTTVFAFLMARVGPNEPSNV"
FT   CDS           1898..4969
FT                 /product="Jockey-4B_DMo_2p"
FT                 /translation="MSLQMSSNVSTSPNASRRSAALQHAVTQRVNNIKISF
FT                 WNAAGVKKKLNELNLYLVKHDIDIMLLSETHLTDSDSIDINGYIVYLANHP
FT                 SNRRRGGAAFLIKQHICHYAMRFTSYDSHQSVEVSVSLQNGRHINIVSIYC
FT                 PPQVIWSGQDFNNLLSSLGDTFIVGGDWNAKSQWWGNARSCLRGRTLVNSI
FT                 LQVNCNILATGSPTHFPFNSRQTPSAIDFALFKGIRRDLLAITDSFELSSD
FT                 HLPLQVQLVEKPVTSRAKGHLLDLNANINKFQSYLNDKILLNTEINSADDI
FT                 DDAVNTFVRNIEDAANYANAQHPRKITRTRFRVDRQTLQLIDAHKQVKRYL
FT                 TRNRNPMLKMLCNRLSNRIRKELIYARQKYEEELFRSIDPTDRYSMQKLWR
FT                 LTNEIKRQPAPNLPLLKSSSDNGSNAQNVWCKTTAEKAETFAASLEQRFQP
FT                 IVTTPPSVLAEIEAQVSQPSLTASVSFRPVTAAEVISHISTLENKKAAGLD
FT                 QIDNHTIKALPLKAVLYLVLICNNSLRLSHFPSSWKLAVVKMVHKPGKPTH
FT                 HVASYRPISLLSGLSKILEYLILSRMLEQDTLVNAIPNHQFGFRKAHSAEQ
FT                 QLGRVTQFIIKAFDDRKYCSAVYMDIKEAFDRVWHTGLKYKLKMLLPDALY
FT                 RILCCYLVDRTFIVECHGGCRSGIKQIHAGVPQGSLLGPILYNIYTSDIPR
FT                 PTRLRGILIATYADDVIVLSADSRQAVALSQQQAYMDSLAEWASKWCITIN
FT                 ANKTMHIMHTLRVIAPYQAIRIGNETIENGTSHSYLGVTLDTKLRFSQHVT
FT                 TVVTRVRARLKKIDWLINKDSKLTLRTKVIIYKQLVAPLWQYSLPVWGALL
FT                 SETQFNRIRVVHNKALRAISGAQYFISNTRIRADLEVLSADDIFNNLCAKY
FT                 YDRLRVHPNNLVKNIVYDPFIPQRITLARYASLANMHLANDIALRTQRQLQ
FT                 READEIAESRERYLRRREAQQHNEAAQAAAHQPQRLPVFEGIAPMPRPLPP
FT                 PSPLAAYRVLFRSHRDQS"
XX
SQ   Sequence 6366 BP; 1837 A; 1487 C; 1309 G; 1732 T; 1 other;
     aatttaaatc tatttaaatc ggtgtttttg caattaattt ttgcaaatta aattgctgca        60
     atgcctaggg gctatactgc agatgacggt gaagaggata tggacgtgga agtcgaatta       120
     ttaatcgact cgcagccatt agcgcctgcg cccacgccat taaaagtgcc ggtgaagaaa       180
     agtgtggtta cggcacgacc aacaacttct cgagctgcgg ctcagcaatt aaaggcaaaa       240
     ccatccactt ctgcggaatc tatggtcgcc gaatatcttg ctgcaaaaaa tgcaatgcaa       300
     agtgctacaa agccgctctc tagtgagaga gcagcaaaga ggactgctga aaaaggcgac       360
     agccccaaga agaagactgc gcagctgggc gcagttgttc tggatggcag tgacgaggac       420
     tgccagcaaa tcgacgacta tatacggact gccaggactg aggacacgca gcgagaggca       480
     acttgcctcg ccaataaagt ttgcacagcc gcaaaaatgc aagttatgcc acctaatgct       540
     gccgctgcag ctgctattag tgctgccgcc gttactgctg ctgccgccgc cactacaact       600
     ggagccagcc atgcgcaacc gagtgcaaag ccagcgccgc tatttatcgc caacgtgacg       660
     gatattatgc cgctattgat tcgcctggat gatgctattg gccaggacaa ttactccacc       720
     aagcctgctg ctaaccacgg cattcgtgtc cagtgcaagg acgtcgccac gcaccgcaaa       780
     ttggtaaagt acctcgatgc taattcaatt gaaaattaca cttttcaatt aaaatgcgag       840
     cgcggctata gagccattat tcggcacttg cacttctcca ctccggatca ctatattcgt       900
     gagcagttgg ccaaattagg gcacgaagtc cgctttttaa gaggcattaa gtctcgattt       960
     tcaaaagagc ctctcgatct cttcgaggtt gagttggccg ccagcgcaaa caacgcagaa      1020
     ttgctgcaaa ttacggccat tggcaatcag cgcgtcaaaa ttgagcggcc gtataaaacc      1080
     aacgaaattg ctcaatgcca taggtgccag aagttcgggc acacaaaaaa ttactgccgt      1140
     cgccccttcg cctgcgtcaa gtgcggcgcc aatcatgctt ccacggactg tggcaagcaa      1200
     aaaggcgacc aaactccagc gaagtgtgcc aattgctccg gcccgcatgc cgcgagctac      1260
     aaaggctgcc ctgcgtataa agaagcgtgc aagaagcgcg aaaatgaaag cgccacgcaa      1320
     ctagctaaag tcattagcaa cttagccaag ccagctgcca ctactgctgc tcagagcagt      1380
     cgagcaaata tgccaaacat gtctaatatg ccaaatcttt tacagcaagc cccccctcag      1440
     tcacgaccgc aaactgttag tgcagggccc agctattcgg ctgcccttcg ggcgggttta      1500
     caatttgctc agcctgtcgg accggcagct attagcagta aacagcgtca gtcgaggcaa      1560
     aaagccacca aagttagcca gcaacaacaa cagcagcagc aacaacagca acagcagcag      1620
     caacaagtcc gcttgcctag gcaggcaagc gcgcagcggc cgccgcagcc aaaacgcagc      1680
     cgtagcctaa gtacgcgccg taggcatcag ctacctttag atgggggtgc gcatcctatt      1740
     agtgggggtg ttcattatca acgtttcgag cagccaataa atgcgaatat gccaagcatg      1800
     ccagtacaag ttagctctag attagaggct aaattagata aactcattga gatgatgacc      1860
     actgtctttg ccttcttgat ggccagagtt ggtcccaatg agccttcaaa tgtctagtaa      1920
     tgtatccact tctccaaatg ccagtagacg cagcgctgca ctgcagcatg ctgtaactca      1980
     acgtgtcaac aacatcaaga tatctttttg gaatgctgcc ggtgtcaaga aaaagcttaa      2040
     tgagctcaac ctatatctcg tcaagcacga tatagatata atgctactgt ctgaaacgca      2100
     tctgactgat agcgatagca ttgacattaa tggttatatt gtttatttag caaatcaccc      2160
     ctcaaacagg cgcagaggag gtgcagcctt tttaattaaa caacatatat gccattatgc      2220
     tatgcgcttt acatcttacg actcgcatca atctgtcgaa gtttcagtca gcctgcaaaa      2280
     tggccgtcat atcaatattg tctcaatcta ctgcccgccg caagtcatct ggtctgggca      2340
     agatttcaac aacctgctat cttctctggg tgacactttt atagtcggtg gtgactggaa      2400
     tgcgaaaagt cagtggtggg gcaacgccag atcttgtctc cgtggccgaa cgctagtcaa      2460
     tagtattcta caagtgaatt gcaacattct ggcaactggg tcgcccaccc attttccgtt      2520
     taattcacgc caaactccgt ctgccattga ctttgcgcta tttaaaggca tcaggcgaga      2580
     tttgctggcc atcactgact ctttcgagct tagctctgat catctcccgt tgcaagtcca      2640
     gctggttgag aagcctgtca ccagcagagc aaaaggccac ttgctagatt tgaatgctaa      2700
     catcaacaaa tttcagagct atctaaatga caaaattttg ctcaacactg agatcaacag      2760
     tgcagacgat attgatgatg cggtcaatac ttttgtccga aacattgaag atgctgcaaa      2820
     ctatgcgaat gcacagcacc cacgcaaaat aacaaggact agatttcgcg tagatagaca      2880
     gactctgcaa ctcatcgacg cccataagca agtcaagcgc tatctcaccc gtaatcgcaa      2940
     cccgatgctc aagatgctct gcaacaggct gtcgaatcgc atacgcaaag agcttatata      3000
     tgctaggcag aagtatgagg aagagctatt tagatctatc gatccaactg atagatatag      3060
     tatgcagaag ctctggcgac tgaccaacga gatcaagcga cagcctgctc caaatctacc      3120
     gctgttgaag tcctctagtg acaatggctc caatgctcaa aatgtctggt gcaagacaac      3180
     tgccgagaag gccgaaacat ttgctgcaag tctcgagcag cgttttcaac caatcgtgac      3240
     tacgccaccc agtgttctgg ctgaaatcga ggctcaagtt agccagccat ctttgactgc      3300
     ttcagtctca tttcggccag tcactgcggc tgaagtcatc agtcacatca gcacgctaga      3360
     gaacaaaaaa gctgctggat tggatcaaat tgataatcac actattaaag cgctgccatt      3420
     gaaggccgtg ttgtatcttg tgctcatttg caacaactca ctacgactga gtcatttccc      3480
     ctcgagctgg aagctagctg tggtgaagat ggtgcataag cctggcaagc ctacgcacca      3540
     tgttgcatca tacaggccaa taagtctgct gtctggcctc tctaagatac ttgagtatct      3600
     gattttgagc cgtatgctgg agcaagatac tcttgtaaat gcgattccaa atcatcaatt      3660
     tggattccgc aaggcgcatt cagctgagca gcaattgggt cgcgttactc aatttattat      3720
     taaagcgttt gatgaccgca aatactgctc tgctgtctat atggatatca aggaagcctt      3780
     tgatcgagtg tggcatacag gcttgaaata taagctcaag atgctattgc cggatgctct      3840
     ctaccgcatc ctctgctgct atttagttga tcggacgttt attgttgagt gtcacggtgg      3900
     ctgtcgctca ggtattaagc aaattcacgc tggtgtgcct caaggtagct tgctcgggcc      3960
     tatcttgtat aatatataca ccagcgacat accaaggcca actcgcctac gtgggatatt      4020
     gattgccact tatgctgacg acgtcatcgt tctttcggct gactctcgac aagcagtcgc      4080
     gctcagtcag cagcaggcgt atatggatag tttggctgaa tgggcgagca agtggtgcat      4140
     tacaattaat gcaaacaaga ctatgcatat catgcatacg cttcgagtta tagcgccata      4200
     tcaggctatt cgcattggca acgaaactat cgaaaatggc acttctcatt catatttggg      4260
     tgttactcta gatacgaaac tgcgcttctc acaacatgtc actacggtcg ttactagggt      4320
     tagggctagg cttaaaaaga tagattggct cattaacaaa gacagcaaat tgactctaag      4380
     aactaaagtc attatttaca agcagctagt tgccccatta tggcaatatt cgctacctgt      4440
     atggggcgct ctgctatctg agacccaatt caaccgcatt agagttgttc acaataaagc      4500
     tctgagagcc atttctggtg ctcagtactt tatttcgaac actcgcatca gagctgattt      4560
     ggaagtttta tctgcggatg atatattcaa caatctctgc gccaaatact atgatcgact      4620
     ccgtgtccat cccaacaact tggtcaaaaa cattgtctac gacccgttca tcccacagcg      4680
     gataacattg gcaagatacg cgagtctcgc aaacatgcat ttggccaatg acatagcttt      4740
     gcgcactcag cgacaactgc aaagagaagc tgacgaaata gctgaaagca gagagagata      4800
     ccttcgccga cgggaggctc agcaacacaa cgaagctgca caagcagcag cccaccagcc      4860
     gcaacgacta cctgtcttcg agggtattgc gccaatgccg cggccactac caccaccatc      4920
     accacttgct gcctataggg tgctatttag atcacatagg gatcagagtt aagtaattac      4980
     actatttaaa cactcagtta caattacaaa attttatttt cggcacatat atatatatat      5040
     gtgcagcgaa catatctgac ggcacttgcg cctaagatgc acattttgaa ttaactaaaa      5100
     actaacttaa atatccgccc tattggctgt gcagccmact tggctaaatc tccttgccgc      5160
     agttgatgtg ctctgcaaag aaaaaatcaa cattaataat cttttaatgt ttttattaac      5220
     ttctgcaaaa ttaacttacc tgctagtcag cttgcaatta atgcagttct gctatctcgg      5280
     ttttgcgccc ctctgcactt tatatggcag cagctgtata cataaaaaga taataattaa      5340
     ttagtattaa ttattaatat cattaacttc acttttataa tccataattg ttaactttta      5400
     ttcacttttg caaaactcac ttacctgcta gtcagcttgc agttaatgca atttcgctat      5460
     cttcaatatc tgcgctcctc tgcatttcgt ataatagcag ctatatatat gaaaagacag      5520
     taattaatta atattaatta ttaatatcat taatttcact tatttatcta ttaattttta      5580
     cacttaccaa ttggcagcat aaaatttgca tgtaatgcaa ttcccaatca gctgtttttt      5640
     gtttttgttt tgattatgca ctccgatagg cacaatgcca ggggtgcatc gtcacttact      5700
     cagttactct tgcgatatat cgaatgaata ttaatgaaat caaaactgcc aaaatgaatt      5760
     gttaaactat ttttatttaa ttatctatat taattatcat aaacattttg taatttaagt      5820
     taaatttagc ttaagcccat gttggagaaa atgaccagac tttgtctcga cttttctcta      5880
     ttattccaat tggccacttt gggctatttt ctctgtgcat cttgtagatg ctttttaatg      5940
     aaaaaactga attatattaa ttaatgccat ctattactat tgttaaactt atatattact      6000
     tatctattta gtcgtttatt agttactcaa gcactttatt gttattttga attatcttta      6060
     atttgctctt tttattagta ttttgtaaca ttaagctgca ctgttatttt tatgcactta      6120
     tggccattta aatttaatca tttaatgaaa agtttcgaca aatatagtcc tttttagatt      6180
     ttaattatat cataggcgct atttatattt ataaaaaaat gctattgtga agtattaaat      6240
     aaataaagag tatccccgta ctcttcccct catcatgcag ctgcaggtca gctgttcatg      6300
     tacgagaatg ggaagaggcg gagatcacta atgtgtgttc tttgtagaca tacgaacaga      6360
     aaaaaa                                                                 6366
//
ID   Jockey-4B_DVi repbase;    DNA;    INV; 4864 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DVi; Jockey-4B_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4864
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1944-1944 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. ~83% identical to Jockey-4_DVi.
XX
FH   Key           Location/Qualifiers
FT   CDS           2029..4716
FT                 /product="Jockey-4B_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAAQMRLGSWNARSIIQNANELKLFLRKHEIDIMLVS
FT                 ETHLHAGLYFAMEGYACYRADHPADRARGGAAVLVKQNLVHYQLPQATSSA
FT                 TQMAAIMVGTPLGEIPVAAVYLPPNLPWSRAGFDSLLEQFGHQFIVGGGSY
FT                 RADNRGIALHEALTSCSAQVLATGRPTHFPYNRQSTPSWIDXFIYKGIPNR
FT                 LISVREEYELSSDHLPLLATVSTSAQRTVKKRRLVTPQSNIQRFKTELNGM
FT                 IDLSMPILTAEDADAAVQTLLCQVHTAAANAAPAQRYLTPTSQPTRTLPPI
FT                 VEGLLCLKKRLRREYVRTQDPRIDRIYRRIANRVRKELTLLRRKVTDTMLE
FT                 EATADESSKFALWKLTSRYKRQAAPKFPVRHPDGTWARSPMERAEAFACNL
FT                 EERFKPFETASRGRIQRVVQILEAPLQMSLPLSPITFQEVKQEIKSLKNNK
FT                 APGEDWLDNQTIKLLPYKAVLFLVAIFNATLRLGHFPVAWKKAHIIMLHKC
FT                 GKPPNQLDSYRPISLLPTFGKILERCILRRILDTPEIKRLIPKFQFGLRLK
FT                 HGTPEQLHRVTNFILDGFHRKEYVVAAYLDIQQAFDRVWHAGLLSKIXGKL
FT                 NPQLFNIIASFLNERTFRVVQDGIASHTKRIRAGVPQGSVLGPTLYSLFTH
FT                 DMPKASEIALVSRQDLLVATFADDTAILAKNNCVYEATDILQEYLKRFENW
FT                 ACRWNISVNPQKCATVTHTLRKDSSPGLFLHGELLEQVRGHKYLGITLDRR
FT                 LTFKKHVTEVTNNLKSKTRRLSWLLSPNNKLSLRNKVLIYKVILAPAWRYG
FT                 LQVYGIAAKTHLNKLRIMQAKILRKISGAEWYIRTRDITKDLKVTMVGDLI
FT                 NQQAASHLFKLRNHPNVLARNLLKRRRRRLKKSYPIDLAKRRL"
FT   CDS           join(305..649,582..1979)
FT                 /product="Jockey-4B_DVi_1p"
FT                 /translation="MATNNRPXNGRXTHSPIYRLPXSSTTPPSNMATNVDR
FT                 LDGSSPPEDFTGITTQQPQQHDTASTATATTTTATXSXSSGCRTSASLGTS
FT                 RAALEPIGTRPKTTNLGSGXXCPSATXSPSGPAPKPPILAAAXXAPLPPXK
FT                 XVGAMPAFHEPLVXWQRKRRXATLLAEAVKKGKPLKNRNTSRTGTKPVTPN
FT                 TASXXSNRFALLEPQDDVSXIDXDXTDTADEXXPAPXXQQAAKKISKPXPI
FT                 XVPGVSXIVAVEQTIDQSVGPDSYEFKVSPSGYLRIYAKDADTHRAIVRKL
FT                 TEVRVQFTHFCLKEDRPYRVVVKNLAASTPRSXIEAAFTSHGHTVTNLCNP
FT                 GARQPTSEASADFTNDSPSRNFWFVDLKQDVNNREALRLNRVGRQRVTIEL
FT                 PRKSNSIRQCFRCFEFDHTKNYCLKQPMCGRCGQPHWTNSEQCQAKTVADL
FT                 RCSNCNGNHAAYNKRCKAFQQRLNARHRINVAPRHDTTNSNLHGASTRSSY
FT                 PPELCNKACRMLMRCGQDATLTSKMLKRANPLCAISPPLQQRSPNTSSMDL
FT                 RGKTRPSEVSFKDSSSRSQHLMQQSQVSWSASRS"
XX
SQ   Sequence 4864 BP; 1419 A; 1327 C; 1081 G; 992 T; 45 other;
     gtgcagtgcg agtgaacaag ttctkgcaaa acttaagctg cgctcagctg atcgcaacwc        60
     aagtacgtga stgtgtgctc gagtgcagca aagctttcgc gagagagctt tcgmwaawgc       120
     tcacttgcag ctgcactgat agtgctggca aaacwttcct tgcagtgaca gtgctgacas       180
     taaagtcaca atttgtgatc aatcacttgt tacaaaaata caggatattt ttgtaattaa       240
     gtgtaaaaaa cttgttttga tttwatttcc wgcwggaaaa aaaataataa caaaataaag       300
     aacaatggcc acgaacaacc gacctcmaaa tggcagagaw actcattcgc caatctaccg       360
     gctgccggmc agctcaacaa cccctccttc taacatggcc actaatgtcg atcgcctcga       420
     tggaagcagt ccacckgaag actttaccgg tattacaacc cagcaaccgc aacagcatga       480
     cactgccagc acagcgacag caacaaccac tacagcsaca kcgtctwcca gcagcggttg       540
     caggacwtct gcctcattag gtacaagccg cgccgcttta gagcccatcg ggacccgccc       600
     caaaaccacc aatcttggca gcggctwctt stgcccctct gccacctawt aagwacgtag       660
     gcgctatgcc agcctttcac gagccactgg tawattggca aagaaaacgg cgtgsggcta       720
     cattgttggc cgaagccgtt aaaaaaggga agccactgaa aaaccgcaac accagccgca       780
     ctggaactaa gcccgtkact cccaacaccg cttcgwcawg tagcaacaga tttgctctcc       840
     tcgagcctca ggacgacgtc tctgwgatcg atgasgacga sacggacact gccgacgaas       900
     cgcstccagc cccagammaa cagcaagcag cgaagaagat ctccaaacca sggccgataw       960
     cagtccctgg agtcagcgaw atcgtcgcag tggagcaaac cattgatcag tcagtgggcc      1020
     cagactccta tgagttcaag gtctctccct ctggctatct tagaatatac gccaaagatg      1080
     ccgacactca cagagcaatt gtccgcaaac tcactgaagt gagagtgcaa tttactcact      1140
     tctgcctaaa ggaagacaga ccataccgcg ttgtggttaa aaatctggcc gcttctactc      1200
     ccagaagccw gatcgaagct gccttcacgt cgcacggcca cactgtgact aacttatgca      1260
     acccgggcgc cagacagcct acaagtgaag ccagtgcaga cttcaccaac gactcgccga      1320
     gtcgcaactt ctggtttgtt gatctcaagc aggatgttaa caacagggaa gcgctaagac      1380
     tcaacagggt tggccgtcaa cgggtcacca ttgagctccc gaggaagagt aacagcataa      1440
     ggcagtgttt ccgctgcttc gagttcgacc acaccaaaaa ctactgtctc aaacaaccca      1500
     tgtgtggtag gtgcggtcag ccccactgga cgaactcgga gcaatgccag gccaaaacgg      1560
     tggcagacct gcgatgctca aactgtaatg ggaaccatgc tgcttataat aaaagatgca      1620
     aagcattcca gcagcgcttg aatgccagac accgcatcaa tgttgccccc cggcacgaca      1680
     caaccaacag caacctgcac ggcgcatcaa ctcgcagttc gtaccctccc gaattgtgca      1740
     acaaggcctg tcgtatgctg atgcgttgcg gtcaggacgc aacacttacc agcaaaatgc      1800
     tcaagcgtgc caaccccctg tgtgcaatca gcccacccct acaacaacgc agccccaata      1860
     cctccagcat ggatctcagg ggcaagacac gtccctcgga agtatccttc aaggactcca      1920
     gcagtcgatc gcagcactta atgcagcagt cacaagtatc ctggtcagca tcaaggagct      1980
     gaaggacgcg caagctccac agctcggtct tcccactcac cgcaaataat ggctgcccag      2040
     atgcgcctcg gatcatggaa cgctcgcagc atcatacaaa atgcaaacga gctcaaactg      2100
     tttttgagaa aacatgaaat agacatcatg cttgtctcag aaacccacct acacgccggc      2160
     ttgtacttcg ccatggaggg atatgcttgc taccgtgcgg atcacccagc agatcgagcc      2220
     agaggaggtg ctgcggtgct tgtcaagcag aacttggtgc actaccaact acctcaggcg      2280
     acttccagcg caacacaaat ggctgctatc atggtgggga ctcctttggg cgaaatacct      2340
     gtagctgcag tgtatctacc accaaatcta ccctggagcc gagctggatt cgattctctc      2400
     cttgaacaat ttggtcatca attcatcgtt ggaggtggaa gctacagagc cgacaacaga      2460
     ggcattgcgc tacatgaagc gctcaccagc tgctcagccc aggtcttggc caccgggaga      2520
     cctacccact tcccgtataa caggcaaagt actccttcgt ggattgactt ntttatatac      2580
     aagggtattc ccaacagatt aatatcagtt cgcgaagagt atgagctttc atccgaccat      2640
     ctaccattac ttgcaacggt atctacgtct gctcaaagga ctgtaaaaaa gcgaaggctt      2700
     gtcacccccc agtcgaacat wcaacgcttc aaaactgaac tgaatggcat gatagatcta      2760
     agcatgccaa ttttgacagc cgaggatgcc gacgctgcag ttcaaaccct gctgtgtcaa      2820
     gtacataccg cggctgccaa cgctgcgcca gcacaaaggt atcttacgcc tacaagtcaa      2880
     cctacgagga cgcttccccc catcgttgaa ggcctccttt gcctgaaaaa gcgactgagg      2940
     agggagtacg tccgcaccca ggaccccaga atcgatagga tctatcgccg tatcgccaac      3000
     agagtcagaa aggagttgac tttgctgaga agaaaagtca cagacaccat gctggaggaa      3060
     gcaacggcag acgagagctc caaattcgca ctgtggaaac taaccagtcg atacaagcgg      3120
     caagctgcac caaagttccc mgttcgacat cccgatggca cctgggccag gtcgccaatg      3180
     gaaagagccg aagccttcgc ctgtaacctg gaggagcgct ttaagccgtt tgagaccgca      3240
     tcgcgtggaa ggatacagcg agtcgttcaa atcctggagg cgccgctcca aatgtcactc      3300
     cctttatcac caatcacctt ccaagaagta aagcaggaga taaagagcct aaaaaacaac      3360
     aaagcccctg gagaagattg gttggacaac cagacaatta agctattgcc atacaaggcg      3420
     gtgctttttc tcgtcgccat ttttaatgca actcttcggc taggtcattt tccagtggcc      3480
     tggaagaagg cgcatatcat tatgttgcac aagtgcggaa agccccctaa tcaactggac      3540
     tcttatcgcc ccatcagcct cctgcctacc tttggcaaga tactggaaag gtgcatcctt      3600
     agaaggatcc tggatacccc ggaaataaaa cgcctaatcc cgaagtttca gtttgggctt      3660
     agacttaaac acggtacccc tgagcaactt catcgggtca caaattttat tttggacggc      3720
     tttcacagga aggagtatgt ggtggcagca tacctcgaca tccaacaagc tttcgaccgg      3780
     gtgtggcacg caggactcct ctccaagatt wagggcaaat tgaatccgca gctctttaac      3840
     atcattgcga gcttcttgaa cgagaggact tttcgagtgg tacaggatgg catagcctct      3900
     cataccaaac gcataagagc gggcgttcca caaggtagcg ttttgggtcc cacactatac      3960
     agcctcttca cgcacgatat gcccaaggca agcgaaatag cccttgtcag tcgccaggat      4020
     ctcctggtgg ctacgtttgc tgatgacacg gcaatccttg ccaagaataa ttgcgtctac      4080
     gaagcaacag acatcctgca ggagtatctg aaacgcttcg aaaactgggc ttgcaggtgg      4140
     aatatctccg tgaaccccca aaaatgtgct acggtcactc acaccctgcg caaggactcc      4200
     tcccccggac tttttcttca tggcgagcts ttagagcagg tgcgtggcca taaataccta      4260
     gggattacac tcgacagacg acttacattc aaaaaacatg tcaccgaggt aaccaacaac      4320
     ctgaaaagca aaaccaggcg tctgagctgg ctgctaagcc caaataacaa actctcgctc      4380
     cggaataaag tcctaatata taaagtaata cttgcccctg catggcgata tggactccag      4440
     gtatacggaa ttgccgcgaa gacgcacctt aacaaacttc gcatcatgca ggccaagatc      4500
     ttgcgaaaaa tctctggagc cgaatggtat attcgaacac gagacattac aaaggacctt      4560
     aaggttacta tggtaggaga ccttatcaac caacaagcag caagtcactt atttaagctc      4620
     cgcaaccacc ctaacgtctt ggcaaggaac ctgctaaaga ggcgaagaag gaggcttaaa      4680
     aagagttacc ctatagacct ggccaaacgc cgactataac gaaacaaaat taacatgcac      4740
     atatatatac acattgtaaa tatttaaatt aagctatcat taaccaaact cacgctgata      4800
     aaagttgcta aaagtaaaaa gtaacagaaa attagcaaaa aaaaaaaata aaaaaaaaaw      4860
     aaaa                                                                   4864
//
ID   Jockey-4C_DMo repbase;    DNA;    INV; 6789 BP.
XX
AC   .
XX
DT   30-SEP-2020 (Rel. 25.10, Created)
DT   30-SEP-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4C_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6789
RA   Bao W.;
RT   "Non-LTR retrotransposons from the genome of Drosophila
RT   mojavensis.";
RL   Repbase Reports 20(10), 3187-3187 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..1911
FT                 /product="Jockey-4C_DMo_1p"
FT                 /translation="MPRGYTADDGEEDMDVEVELLIDSQPLAPAPTPSKVP
FT                 VKKNVVMAQPSTSRAAAQLLKSKASTSAQTLVADYFKAKDAIKSGAKPLAN
FT                 ERAAKRTAEKGDSPKKKTAQLCAVDLDGSDEDCLPIDDLIRTTRTEDTQRE
FT                 ATCLANEVCTAAKVQTMPPNAAAAAATTAAAVTAAAAATTTGASRAQPSAK
FT                 PAPLFIANVTDIMPLLIRLDDAIGQDNYSTKPAANHGIRVQCKDVATHRKL
FT                 VRYLDANSIENYTFQLKCERGYRAVIRHLHFSTPDHYIREQLAKLGHEVRF
FT                 LRGIKSRFTKEPLDLFEVELAVSANNAELLQITAIGNQRVKIERPYKTNEI
FT                 AQCHRCQKFGHTKNYCRRPFACVKCGANHASTDCGKQKGDQTPAKCANCSG
FT                 PHAASYKGCPAYKEACKKRENESATQLAKIINTLAKPAPTVTAQSSRVNMP
FT                 NMSNMPNLLQQAPPQSRPQTVSAGPSYSAALRAGLQFAQPVGPAAISSKQR
FT                 QSRQKATKVSQQQQQQQQQQQQQQVRLPRQASAQRPPQPKRSRSLSTRRRH
FT                 PQPIDGGAHPASGGVHFQRFEQPMNANVPSMPVQVSFRLEAKIDKLIEMMT
FT                 TLTACLLAQFGPNERLNV"
FT   CDS           1907..4966
FT                 /product="Jockey-4C_DMo_2p"
FT                 /translation="MSNNVTTSPNTSRRSAALQPAVSQRVNNMNISFWNAA
FT                 GVKKKLNELNLYLVKHDIDIMLVSETHLTDSDSIAINGYIVYLANHPSNRR
FT                 RGGAAFIIKQQICHYAMRFTSYDSHQSVEVSVSLQNGRHINIVSIYCPPQV
FT                 IWSGQDFNNLLLSLGDTFIVGGDWNAKSQWWGNARSCLRGRMLVNSILQVN
FT                 CNILATGSPTHFPFNSRQTPSAIDFALFKGIRRXLLAITDSFELSSDHLPL
FT                 QVQLVEKPIISRAKGHLLDLNANINKFQSYLNDKILLNTEINSADDLDDAV
FT                 NIFVKNIEDAANYANAQHPRKITRTRFRVNRQTLQLIEAHKQIKRYLTRSR
FT                 NPMLKMLCNRLSNRIRKELIYARQTYEEELFRSIDPTDRYSMQKLWRLTNE
FT                 IKRQPAPNLPLLKSSSGDGSNSQNVWCKTTAEKAETFAASLEQRFQPIVTT
FT                 TPSDLAEIEAQVSQTSLTASVSFRPVTAAEVISHISTLESKKAAGLDQIDN
FT                 HTIKALPLKAILYLVLICNNSFRLGHFPSCWKLAMVKMVHKPGKPTQHVAS
FT                 YRPISLLSGLSKILEYLILSRMLAQDTLVNAIPSHQFGFRKAHSAEQQLGR
FT                 VTQFIIKAFDDHKYCSAVYMDIKEAFDRVWHPGLKYKLKRLLPDALYRILC
FT                 CYLADRTFIVECHGGCRSGIKQIHAGVPQGSLLGPILYNIYTSDIPRPTRL
FT                 RGILIATYADDVIVLSADSRQADALSQQQAYMDSLAEWASKWCITINANKT
FT                 MHVMHAYRVIAPYQAIRIGNETIENGTSHPYLGVTLDSKLRFSQHVTTVVT
FT                 RVRARLKKIDWLINKDSKLTLRTKVIIYKQLVAPLWQYSLPVWGALLSESQ
FT                 FSRIRVVHNKALRAISGAQYFISNSRIRTELDVLSADEILNNLCAKYYERL
FT                 RAHSNNLAKNIAYDPFIPQRITLARYMSLVNTHLANDIALRTQRQLQREAD
FT                 EVAESRDRYLRRLEAQQRNEAAQAAAQQPQRLPVFEGIAPMPRPLPPPSPL
FT                 AAYRVLFRSHRDQS"
XX
SQ   Sequence 6789 BP; 2025 A; 1519 C; 1347 G; 1891 T; 7 other;
     tgtaatttaa atctattaaa atcggtgttt ttgcaattaa tttttgcaaa ttaaattgct        60
     gcaatgccta ggggctatac tgcagatgac ggtgaagagg atatggacgt ggaagtcgaa       120
     ttattaatcg actcgcagcc attagcgcct gcgcccacgc catcgaaagt gccggtgaag       180
     aaaaatgtgg ttatggcaca accatcaaca tctcgagcag cggctcagtt attaaaatca       240
     aaagcttcaa cttcagcgca aacattggtc gctgactatt ttaaagctaa agatgctatt       300
     aaaagtggcg cgaagccact tgcaaacgaa agagcagcaa agaggactgc ggagaaaggc       360
     gacagcccca agaagaagac tgcgcagctg tgcgcagttg atctggatgg cagtgacgag       420
     gactgcctgc caattgacga cttaatacgg accaccagga ctgaggacac gcagcgagag       480
     gcaacttgcc ttgccaatga agtttgtaca gctgcaaaag tgcaaactat gccacctaat       540
     gctgccgctg cagctgctac tactgctgcc gctgttactg ctgcagccgc tgccactaca       600
     accggagcca gccgtgcgca accgagtgca aagccagcgc cgctatttat cgccaacgtg       660
     acggatatta tgcctctgct aatacgcctg gatgacgcta ttggccagga caattactcc       720
     accaagcctg ctgctaacca cggcattcgt gtccagtgca aggacgtcgc cacgcaccgc       780
     aagctggtaa gatatctcga cgcaaattca attgaaaatt acacatttca attgaagtgc       840
     gagcgcggct atagagctgt tattcggcat ctgcacttct ccactccgga tcactatatc       900
     cgtgagcagt tggccaagtt agggcacgaa gtccgctttt taagaggcat taagtctcga       960
     tttacaaaag agcctctcga tctctttgag gttgagttag ccgtcagcgc aaacaacgca      1020
     gaattgctgc aaattacggc cattggcaac cagcgtgtca aaattgagcg gccgtataaa      1080
     actaatgaaa ttgctcaatg ccataggtgc caaaaattcg ggcacacaaa gaattattgc      1140
     cgtcgcccct ttgcctgcgt caagtgcggc gccaatcatg cttccacgga ctgtggcaag      1200
     caaaaaggcg accaaactcc agcaaagtgt gccaattgct ccggcccaca tgccgcgagc      1260
     tacaaaggct gccctgcgta taaagaagcg tgcaagaagc gtgaaaatga gagtgctacg      1320
     cagctagcaa agataattaa cactctagct aagcctgctc cgactgtaac tgctcagagc      1380
     agtcgagtaa acatgccaaa tatgtctaat atgccaaatc ttttgcagca agccccccct      1440
     cagtcacgac cgcaaactgt tagtgcaggg cccagttatt cggctgctct tcgggcgggc      1500
     cttcaatttg ctcagcctgt cggaccggca gctattagca gcaaacagcg tcagtctagg      1560
     caaaaagcca ccaaagttag ccagcaacaa caacaacagc agcaacaaca acaacagcaa      1620
     caagttcgtt tgcctaggca ggcaagtgcg cagcggccgc cgcagccaaa acgtagccgt      1680
     agtctgagta cgcgccgtag gcatccgcaa ccaatagatg ggggtgcgca tccagctagt      1740
     gggggtgttc attttcaacg tttcgagcag ccaatgaatg cgaatgtgcc aagtatgcca      1800
     gtgcaagtta gctttagatt agaggctaaa atagacaaac tcattgagat gatgaccaca      1860
     ctcacggcct gcctgttggc ccaatttggt cccaatgagc gcttaaatgt ctaacaatgt      1920
     aactacttcc ccaaatacca gtagacgcag cgctgcactg cagcctgctg tatctcaacg      1980
     tgtcaacaac atgaacatat ctttttggaa tgctgccggt gtcaagaaaa agcttaatga      2040
     gctcaatcta tatctcgtca agcacgatat agacataatg ctagtgtctg agacgcatct      2100
     gactgatagc gatagcattg ctattaatgg ctatattgtt tatttagcaa atcacccctc      2160
     aaacaggcgc agaggaggtg cagccttcat aattaaacaa cagatatgcc attatgctat      2220
     gcgctttaca tcttacgact cgcatcaatc tgtcgaagtt tcagtcagcc tgcaaaatgg      2280
     ccgtcatatc aatattgtct caatctactg cccgcctcaa gtcatctggt ctgggcaaga      2340
     tttcaacaac ctgcttttat ccttgggtga cacctttata gtcggtggtg actggaatgc      2400
     gaaaagtcag tggtggggca acgccagatc ttgtctccgt ggccgaatgc tagtcaatag      2460
     tattctacaa gtgaattgca acattctggc aactgggtcg cccacccatt ttccgtttaa      2520
     ttcgcgccaa actccgtctg ccattgactt tgcgctwttt aaaggcatca ggcgagawtt      2580
     gctkgccatc actgactctt tcgagcttag ctcagatcat ctcccgttgc aagttcagct      2640
     ggttgagaag cctatcatta gcagagcaaa aggccatcta cttgatctga acgctaacat      2700
     caacaaattt cagagctatc taaacgacaa aatattactc aacactgaga tcaacagtgc      2760
     tgacgatctt gatgatgcgg tcaatatttt tgtcaaaaac attgaagatg ccgcaaacta      2820
     tgcgaatgca cagcacccac gcaagataac aaggactaga tttcgagtaa acaggcagac      2880
     tctgcaactt atcgaggccc ataagcaaat caagcgctat ctgactcgaa gtcgcaaccc      2940
     gatgcttaag atgctctgca acaggttgtc gaatcgcata cgcaaggagc tcatatatgc      3000
     taggcagacg tatgaggaag agctatttag atctatcgat ccaactgata gatatagtat      3060
     gcagaagctc tggcggctga ccaacgagat caagcggcag cctgctccaa atctaccgct      3120
     gttgaagtcc tccagtggcg atggctcaaa ttcacaaaat gtctggtgca agacaactgc      3180
     cgagaaggcc gaaacgtttg ctgcaagtct tgagcagcgt tttcaaccca tcgtgactac      3240
     gacacccagt gatctggctg aaatcgaggc tcaagttagc cagacatctt tgactgcttc      3300
     agtctcattt cggccagtca ctgcggctga agtcatcagt cacatcagca cgctagaaag      3360
     caaaaaagcg gctggtttgg accaaattga caatcacacc atcaaagcgc tgccattgaa      3420
     ggccattttg tatctcgttt tgatatgtaa taactctttt agactgggtc atttcccctc      3480
     ttgctggaag ttagcgatgg tgaagatggt gcataagcct ggcaagccaa cgcaacacgt      3540
     cgcatcatac aggccaataa gtctcttatc tggcctctct aagatacttg agtacttgat      3600
     attgagccgc atgctggccc aagatactct tgtcaacgcg attcccagcc atcagtttgg      3660
     attccgcaag gcgcattcag ctgagcagca attgggtcga gttactcaat ttattattaa      3720
     agcgtttgat gaccataaat actgctctgc tgtctatatg gacataaaag aagccttcga      3780
     tcgagtgtgg catccaggct tgaaatacaa gcttaagagg ctactgccag atgctctcta      3840
     tcgcatcctc tgctgctatc tagcagatcg cacttttatt gttgagtgtc acggtggctg      3900
     tcgctcagga atcaagcaaa ttcacgccgg tgtgccacaa ggtagcttgc tcgggccaat      3960
     cttgtataat atatacacca gcgacatacc aaggccaact cgtctacgtg ggattttgat      4020
     tgctacttat gctgatgacg tcattgttct atcggcagac tctcgccaag cagatgcgct      4080
     cagtcagcag caagcttata tggatagttt ggccgaatgg gcgagcaagt ggtgcattac      4140
     aattaatgca aataaaacta tgcatgtcat gcatgcatac agagttatag cgccatatca      4200
     ggctattcgc attggcaacg aaactattga aaatggcact tcacatccgt atttgggcgt      4260
     tactctagat tctaaactgc gcttctctca acatgtcact acggtcgtta ctagggtcag      4320
     ggctagactt aaaaagatag attggctcat caacaaagac agtaaattga cgcttagaac      4380
     taaagtcatc atatacaagc agctagttgc cccattatgg caatattcgc tacctgtatg      4440
     gggtgctcta ctatccgagt cccaattcag ccgcattaga gtggttcaca ataaagctct      4500
     gagagccatt tctggtgctc agtactttat ctcgaactct cgcatcagaa ctgagctgga      4560
     cgtcttgtct gcagatgaga tactcaataa tctctgcgct aaatactacg agagacttcg      4620
     cgctcatagc aacaatctgg ccaaaaacat agcctatgac ccgtttatcc cacagcggat      4680
     aactttggct agatacatga gtcttgttaa cacgcattta gccaacgata ttgcattacg      4740
     tactcagcga cagctacaaa gagaagccga cgaagtagct gaaagtagag atcgatacct      4800
     tcgccgactg gaggctcagc aacgcaacga agctgcacag gcagcagccc agcagccgca      4860
     acgcctacct gtttttgaag gtattgcgcc aatgccgcgg ccgctaccac caccatcacc      4920
     acttgctgcc tatagggtcc tatttagatc acatagggat caaagctaag tatttgttcg      4980
     aacattcgca ttatagagta tctaaaataa caaattatac actaactgaa catctaatta      5040
     caattcaaaa gtttattttc ggcacatata tacatatatg cagcgaactt atgtgacggc      5100
     gcttgcgcct aaatgcacat ttcgaattaa cttaaaacta acttaattat gtggcctatt      5160
     ggctgtagag tccacttagc taatcctcct tgctgtggtt gatgtactct gcaaagaaaa      5220
     aatcaacatt aatagtcttt taatgttttt attcactttt gcaaaattca cttacctgct      5280
     agtcagcttg caattagtgc atttctgcta tttccagttt tgcgcccctc tgtactttgt      5340
     atggcagcag ctctatatat aaaaagttaa aaattaatat taattattaa tatctttaat      5400
     tttactttta taattattaa tttctatttt gcaaaattta cttacctgct agtcagcttg      5460
     cagttaatgc aatctcgcaa tcttcagtat ttgcgcccct ctgcattttg tataattgca      5520
     gctatatata tgcaaagata ataattaatt aatattaatt attaatatca ttaataccac      5580
     taatataatt attaatattt aaacttacca attagcagca tcaaatttgc atttaatgca      5640
     attttcagtc agctgttttt gtttcgtttt gttttgatta tgcactccga taggcactaa      5700
     gccagggatg catcgtcact tactcaattg tacttgcgat gttttgaacg aatattaatg      5760
     aaatcmaaat tgctaaaatg aattgaaaag ctattttaaa tacaaattat taaattttta      5820
     tgaatattaa actatattaa attaatttaa aaataattat tatatagttg caatcaaaat      5880
     caaacatatg tctacacatt cgatatattg cagcaaatat cgctatgcat aaacattgta      5940
     aatatgtaaa ctaaactaaa taataattaa aactagtata taattaatta ataacatgaa      6000
     ctttagaact ttaatataaa waattattat caattgttaa ttcttattgt tcatagtctt      6060
     tgacttgcca tatatgtagt tactctcgat aactccccga taactatgta acaacttact      6120
     actgcacaaa cattgtatgg tgacagttgt gcatattctt ttagctattg caacttaaat      6180
     gtaaaatgaa aagaaaataa ttatctatat taattataat taattttctg taatttaaac      6240
     tatttttagc ttatgcccat attggagaaa atgaccagac tttgtctcga tttttctcca      6300
     taattccaat tagctactct gggctaattt ctcagtgcat cttgcagatg cttattaatt      6360
     gaaaaagaaa attgaattat actaattatg ctatctatta ctattgtaaa atttatatct      6420
     tatttatcta attagtcttt tatcagctac tcaagcactt tattgtcatt ttgwattatc      6480
     tttaawttgc tctttttttt aatattttgt aacattaagc tgcactgtta tttttgtgca      6540
     cttatggcca tttaaattta atcatttaat gaaaagtttc gacaaatata gtccttttta      6600
     gattttaatt atctcatagg cgctatttat atttataaaa aaatgctatt gtgaagtatt      6660
     aaataaataa agagtatccc cgtactcttc ccctcatcat gcagctgcag gtcagctgtt      6720
     catgtacgag aatgggaaga ggcggagatc actaatgtgt gttctttgta gacatacgaa      6780
     cagaaaaaa                                                              6789
//
ID   Jockey-4_BTa repbase;    DNA;    INV; 4574 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4574
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 706-706 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..1522
FT                 /product="Jockey-4_BTa_1p"
FT                 /translation="MDNHVIRLKPGETLQPHLVLSEQTLNQNSSTSSNNIN
FT                 YNEILLEANNAITTLIPTQNLGNETVTKFRELKNITNKLSTALQKSIEETN
FT                 NFRHELITVKAEQAKKEKETSDKFKQLEERLNTLQSSLNNGTNATKPNNNN
FT                 QIKSDLEPTSDNDENMDTSTYALPDSDEEERIVDIETLAWKTVAKRNKGAK
FT                 DKRKREDSGSSPNSKSITPNATPGKKVKIISKQPGLEQNKKKQTTLNHDST
FT                 KKDSAASSKDNLPPPIKICNFEDVNKLRTLILNVIKDETQFSLKAITTVGT
FT                 KAVWKVNVISEDHYRALTNELNKNKEIFWYTHENKNTRDFRVMCKGMSPQT
FT                 SEEDIVDSLKGKNFNVISAVNIFKKTQPENGKGGPALKEPLFLHQITFAQG
FT                 EDPEREINQQKNSLAQLAPTNPINLLKILMLKLMHQQLLHLKMTYHKS"
FT   CDS           1623..4409
FT                 /product="Jockey-4_BTa_2p"
FT                 /translation="MLKNLPQNAHSKVKNFFSDVSNIKLLHNESTLRIVAW
FT                 NANGILNHRVQIIQFLNDYNIDIMLFSETRLTKESYFSIPNYVFYHALHPD
FT                 NTAHAGAGILIKRKIKHFLNDSITQEMFQSVSITINLHQQDLTIASIYSPP
FT                 HHNPQEIDYANLIDRLGTRFLIAGDWNAKNFAWGSKTIYTKGRHLLKAINS
FT                 LHAGIASQGRPTHYPTDPLKNPDILDFGIYKGFSKQNIHTSLIEDELSSDH
FT                 IPVHFHLAAAPIFTSPPPRLISRATDWGFFQEYINERVKLYADPKLETPHK
FT                 IDSELENLVKIIQDAAENATPPPLQHIKAGYKTPPYIVKMLKEKRKARKRW
FT                 LRSRDPKDKAFFNTLSRELTNELWIVRNKQLDKYIKTLDASPASEYSLWKA
FT                 ISYIKRPPLYNAPLFNESTGKWAKTDLHKANLHASHLEKVFKPNSLPNATK
FT                 RDILYQLNEKGLIDPDHEIPQFSFGEVNKLIGKCKTKKAPGKDQLTGLILK
FT                 KLPEKAIHKLVQIFNAIIKLQYVPSKFKEAIIIVFHKNGKPERNPSSYRPI
FT                 SLLSSIAKLWERLYLPRLLKVINIKNILPDIQFGFRAKHSTIEQIHRVTNF
FT                 IEKALEKGEYCVSAFLDVAQAFDKVSHKLLIKMLTNLLPACHVKLIQSYLS
FT                 DRTFRVRVGEALSDEKPILAGVPQGSVLGPLLYLLFTSDIPAPVRKSLLGK
FT                 YADDTAYLSSNKSQELATQELEENLQNVYNWTIEKDIKLNCGKTIYKIFSN
FT                 RIIKDINIIFNKVLLKPSSVAKYLGIHLDTKLKWKEHIKIKRDECNYKIRK
FT                 LQWLIGRKSKLTIDNKLLLYKQILRPTWAYGAQIWGCAARSNLEIIQRVQN
FT                 RVLRQIVGARWYERNSDIHRDLGMETVSQFIAKVATNYEKRLHRHPNIEAI
FT                 QLLDNSNELRRLKRMKPWELASPSV"
XX
SQ   Sequence 4574 BP; 1697 A; 918 C; 734 G; 1225 T; 0 other;
     cagtcagtcg tgctatcggc gagctcggag acagtcgttt ctacgcttca ctgctcttta        60
     ttatctcgac tcccatctaa tctaataccg tgtgcttact aaaaacattg tgccagattg       120
     tgcttcatgc agctttaaaa catgtgacaa gtgtactgtg cagagactcc ctggtgcccg       180
     ctaacggtgt ggcaccatgg ataaccatgt aatcaggctc aagcctggtg aaactttgca       240
     gccacacctc gttttaagtg aacaaacttt aaatcaaaat tcctcaacta gttcaaataa       300
     cataaactat aacgaaatcc tccttgaggc aaataatgct atcactactc tcatccctac       360
     acaaaattta gggaatgaaa ctgtgactaa atttcgggaa cttaagaaca ttacaaataa       420
     actctcaact gcactccaaa aatctatcga agaaactaat aatttcagac atgaacttat       480
     aaccgtaaaa gccgaacaag ccaaaaaaga aaaagaaaca agtgataaat ttaaacaatt       540
     ggaagaaaga ctaaatacgc tacaatcttc tcttaataat ggcactaatg ccacaaaacc       600
     caataataac aaccaaataa aaagtgactt agaaccaacc agtgataatg acgagaatat       660
     ggacactagc acctatgcat tacctgattc tgatgaggaa gaacgtattg ttgacatcga       720
     aacactggca tggaaaaccg ttgcaaaaag gaataaagga gccaaggaca aacgtaagag       780
     ggaggactct ggatctagcc ctaattctaa aagtattacc cctaacgcta ctcctggtaa       840
     gaaagttaaa attatttcca aacagcctgg tttagaacag aacaagaaga aacaaacaac       900
     tttaaatcat gattctacga aaaaggactc agcagcatct tcaaaggata atcttcctcc       960
     acccattaaa atttgtaatt ttgaggatgt taataaatta cgtactttaa ttcttaatgt      1020
     tattaaggat gaaacacagt tttcgttaaa ggcgatcaca acggttggca ctaaagcagt      1080
     atggaaggtg aatgttatat cagaagatca ctatcgtgct ttaactaatg aattaaataa      1140
     gaataaggaa atcttttggt atactcacga aaacaaaaat acccgtgatt ttagagttat      1200
     gtgtaaaggt atgtctcccc aaacatctga ggaggatatt gttgattccc tcaagggaaa      1260
     aaattttaat gtaatcagcg ctgtaaacat ttttaagaaa acgcaaccag agaatggtaa      1320
     gggtggtcct gccttaaagg aacccttatt cctacaccaa atcacctttg ctcaggggga      1380
     ggacccagaa agagaaataa atcaacaaaa gaactcactg gcgcagctag cgccaacgaa      1440
     tccaataaac ctcctaaaaa tattaatgct aaaacttatg catcagcagc tgctccacct      1500
     caaaatgact tatcacaagt catgaatcta ttgaatcaaa tatttaatcg catgacagta      1560
     tttgaaacta aattaaatgc tcacgatctc gcactgagcg ggaaggcaac atcacaatca      1620
     agatgctgaa aaatctgcct caaaatgcac atagtaaagt caaaaatttc ttttcagatg      1680
     tctccaatat aaagctatta cataatgaat ctacgctgcg aatagtagcg tggaatgcaa      1740
     atggaattct aaaccacaga gtacaaatta ttcaattttt aaatgactat aacattgata      1800
     ttatgctttt ttcagaaact agacttacaa aagaatcata tttctctatt cctaattatg      1860
     tcttttatca cgctctccat cctgacaata cagcacatgc tggcgcaggt atcttaatca      1920
     aacgcaaaat taagcatttt cttaatgatt caattacaca agaaatgttt cagtctgtat      1980
     caatcactat caatttacat caacaggatt taacaatcgc atctatatac tccccacctc      2040
     atcataaccc ccaagaaatt gattatgcta atcttatcga tcggttgggc acgcgcttcc      2100
     tgatagccgg tgactggaat gcaaagaact tcgcatgggg ctctaaaact atttacacta      2160
     aaggcaggca tttattgaaa gcaattaatt cgttacatgc tggtattgcg tcacagggac      2220
     gccctactca ctacccaaca gacccactaa aaaatccaga catccttgat tttggtattt      2280
     ataaaggttt ctctaaacaa aacatacaca cttcattaat tgaagatgaa ctttcctctg      2340
     atcatattcc tgttcacttt catctagctg cggcccctat atttacaagt cctcctccaa      2400
     gactcataag cagagccaca gactggggat tctttcagga gtatattaat gaaagagtca      2460
     aactttatgc agacccgaaa ttagaaacac cacacaaaat tgactcagaa ttagaaaatc      2520
     tagttaaaat aatacaagac gcagccgaaa atgccacccc tccacccttg caacacatta      2580
     aagcaggata taaaactccc ccttacattg ttaaaatgct aaaagagaaa aggaaagcta      2640
     gaaagagatg gttacgatct agagacccca aagataaagc attcttcaac actctctcaa      2700
     gagagttgac aaatgagctc tggatagtca gaaataaaca actcgacaaa tatatcaaaa      2760
     ccctagatgc ctcacctgca tctgaatact cgctttggaa agcaatcagt tatattaaac      2820
     gtcccccact ttataatgcc ccacttttta atgaaagtac aggaaaatgg gccaaaacgg      2880
     acctacataa agctaaccta catgcatccc atcttgagaa agtatttaaa cctaactcat      2940
     tgcctaatgc tacgaaacgc gatattctct atcaattaaa tgaaaaaggg ttgattgacc      3000
     cagatcatga aattccacaa ttttcattcg gagaggttaa taaactaata ggcaaatgta      3060
     aaacgaaaaa agccccagga aaagatcaac taacaggcct tattctcaaa aaattaccag      3120
     aaaaagcaat tcataaacta gttcaaatat ttaatgctat aatcaaacta caatatgtcc      3180
     ctagtaaatt taaagaagcg ataataatag tttttcacaa aaatggtaaa ccagaaagaa      3240
     atccatcgtc ttatcgccca atctcactac tttcatccat agcaaagcta tgggaaaggt      3300
     tatatctccc cagattatta aaagtcataa acattaaaaa tattttgcca gatatccaat      3360
     tcggatttag agctaagcac tctacgatag aacaaataca tagagtaact aacttcatag      3420
     aaaaagccct cgaaaaagga gaatactgcg tttcggcatt tttagatgta gctcaagcat      3480
     ttgacaaggt ctcccataaa cttttaatta aaatgctaac taatcttctt cccgcttgcc      3540
     atgttaagtt aatacaatct tatctttctg acagaacctt ccgtgttaga gtaggagagg      3600
     ccttgtcaga tgaaaaacct attctagcag gagtaccgca gggatcagta ttaggcccat      3660
     tactttattt attatttacc tcagacattc cagccccagt tagaaaatct ctactgggca      3720
     aatatgcaga tgatactgca tatttatcca gtaacaaaag tcaggaatta gccacccaag      3780
     aattagaaga aaatctccaa aatgtttata actggacaat tgaaaaagat atcaaactta      3840
     attgtggaaa aactatttat aagatatttt ctaatcgtat aattaaggat atcaatatta      3900
     tattcaataa agttctatta aaaccctcat cagtggccaa gtatctaggt atacacctag      3960
     atactaaatt aaagtggaaa gaacacatta aaataaaaag agacgaatgt aattacaaaa      4020
     ttagaaaatt acaatggtta attggtagaa aatcgaaact aaccattgac aataagttac      4080
     ttctgtataa acagatcctg agacccacat gggcatatgg agctcaaatc tgggggtgtg      4140
     cagcacggtc caacttagaa attatacaga gagtacaaaa tcgtgttctg agacagatag      4200
     tcggagcacg atggtacgaa aggaattctg atattcatag agacctaggg atggagactg      4260
     tctcgcaatt tattgcaaag gttgcaacaa actacgagaa acgtctccat cgacacccta      4320
     atattgaggc aatacaactt ttagacaatt ccaatgagct cagacgcctc aaaaggatga      4380
     agccgtggga actggccagc ccctcggttt gaaccaataa tcttatattt tttatagttt      4440
     ttgtacttag ataagttacg aacttctcgg ttgtttgtat tttcactttt acttattctt      4500
     tagaaacaaa gtgtatattt tcattgtgaa agctcgcttg atactaataa aaaaaaaaaa      4560
     aaaaaaaaaa aaaa                                                        4574
//
ID   Jockey-4_CQ repbase;    DNA;    INV; 4116 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4116
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 115-115 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           55..1203
FT                 /product="Jockey-4_CQ_1p"
FT                 /translation="MTKKRRGSPLPGPPGDPLLAKNPFAPLANPGPAPPAT
FT                 VPRKEKLPPFFVRSIEGNLKADLDALIKRGLKATMKLCTDGFKIIVPSKPH
FT                 FNAVLEYLRQKKAAFFTHDIPADKPFKVVLRGLYEMQEGELTDYLSDCGLK
FT                 VVAVHKIRRKETNTRFRDQLYLLHLEKGSTTLKDLKLIKAVANVVVEWEQY
FT                 RPVHRDVTQCWKCLNFGHGGRNCFLASRCPNCGENHDQAQCAAEILVAKCC
FT                 NCGGDHPSTDRACPKRAEFIQFRKNVAARKNNGRPKPTPINQESFPALPNR
FT                 NRVPNLEPIPLPGLRPKPAPNPVPPGFQRFDPTPGVKPNPPGDGPRPRTKL
FT                 LTAAELLNTFKIMYAKLMQCQTVEEQSMAVLEFTYQIVYG"
FT   CDS           1058..3844
FT                 /product="Jockey-4_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAPDREPNCSPRLSSSTPSRSCMPSSCNAKQSRNRVW
FT                 RSSSSPTKSFMDNYTPTRILIWNSCSIGRKTLELSDFLRSNNIEVAAISET
FT                 HLKPGDKVWVPDYVPVTLERTRCKKGGVAVLVHHLVHFRVLPSLQTKFIEA
FT                 VGVEVDTSTGPVAVVAVYCPKQCRIVDGSLADYKNDLLKLTRRFPRFIIAG
FT                 DLNARHSLWGNPSNNRNGNVLAEDLQAGHYVVLHPESPTFFSHAGVGSTLD
FT                 IALTNLSEFCTPLQALTELSSDHLPVIFNLEARVNERQRLRRHNYHRANWI
FT                 RFKQFVDDRVEENPVLDSKEAIDRALLVLEDSLNEAKDLFIPTAEVSSKFV
FT                 NIDPETKRIMSLRNAVRRQYQRTGNPGRKALFKKLNKIVSVRVEKFRNRQF
FT                 SKHLKSIPPYSKPFWRLTKILKTKPKPIPPLKSDDLAVTPVEKANLIAGHF
FT                 LTSHNLGRDIVSPMEGPVLESIHQLAHTPWVLPDDQKITLEELSGWLKGLK
FT                 NMKAPGFDGIFNIVLKHLGEKARTLLVAIFNRCLELGYFPTAWKRAKVVPI
FT                 LKPGKDPSSPTSYRPISLLSSLSKLFEKLIYRRLLAHVEENNILLDEQFGF
FT                 RRGHSTVHQLQRVTKMIHRAKSVSKTTVMALMDIEKAFDNVWHDGLVHKLM
FT                 QFNVPTYLVQVISDYLDRRTAQVNIGSSVSDPYDCPAGVPQGSILGPLLYN
FT                 LDTSDIPPLPGGGTLSLFADDSAISYEGRNIRHLVTKLQNGLDVYTRYLSD
FT                 WKICVNAAKTQAIVFPHRNTDRLKPTTKLKVLGTEVDWSQVVRYLGLLIDS
FT                 KLLFRYHLDDRIIKGIAMLKKLYPIINRRSKASLKNKLAVYKMVVAPMLLY
FT                 GSPVWQGCAMTHRKKLQVIQNKFLRLILNQPWRTRSSDLHRLASIEPVDAR
FT                 LASLAEKHRNRALVSEHGSIRGLYP"
XX
SQ   Sequence 4116 BP; 1014 A; 1202 C; 1073 G; 825 T; 2 other;
     agctcgttga taacacaaaa agttttggag gataaggagt agaagtcagt tacgatgacg        60
     aagaagagga ggggcagccc ccttcccggc ccgccgggtg accccctgct ggcgaaaaat       120
     ccgttcgcgc cgctcgccaa ccctggaccg gcaccgccgg caaccgttcc gcggaaggag       180
     aagctcccgc ctttttttgt gaggtcgatt gagggcaacc tcaaggccga cctcgacgcg       240
     ttgatcaaac gtggcctcaa ggccaccatg aagctgtgca cggatgggtt caaaatcatc       300
     gtgccgtcga agccccactt caacgcggtg ttggagtacc tccggcagaa gaaagctgcg       360
     ttcttcacgc atgacatccc ggcggacaag ccgttcaaag tggtcctgag gggcctctac       420
     gagatgcagg aaggagaact caccgactac ctatccgact gtggcctgaa ggtggtcgcg       480
     gtccacaaga tccgccgaaa ggagaccaac accaggttcc gcgaccaact ctacctcctc       540
     cacctggaga aggggagcac gacgctgaag gatctcaagc taatcaaggc cgtcgcaaac       600
     gtggtggtcg agtgggagca gtatcgcccg gtccatcggg atgttacgca gtgctggaag       660
     tgcctgaact tcggccatgg cggccgaaac tgttttctcg cctcgcgctg tccgaactgt       720
     ggtgaaaacc acgaccaagc ccagtgtgcc gctgaaatcc tggtggccaa gtgttgcaac       780
     tgcggtggtg atcatccgtc gaccgatcgt gcctgcccca agcgtgctga atttattcag       840
     ttccggaaga acgtggctgc ccggaagaac aacggtcgtc cgaagccaac cccaatcaac       900
     caggagagct ttccagctct tcccaaccgc aacagagttc cgaatctcga gccaattccg       960
     cttccgggcc tgcggcctaa gccagctccg aatccggttc cccccggctt ccagagattt      1020
     gacccaactc caggagtcaa gcccaacccg cccggcgatg gccccagacc gagaaccaaa      1080
     ctgctcaccg cggctgagct cctcaacacc ttcaagatca tgtatgccaa gctcatgcaa      1140
     tgccaaacag tcgaggaaca gagtatggcg gtcctcgagt tcacctacca aatcgtttat      1200
     ggataattac accccaaccc gcatcctcat ctggaactcc tgctctattg gcaggaaaac      1260
     attggaacta agcgactttc ttcgatcaaa caacattgaa gtcgctgcca tttcggaaac      1320
     gcaccttaag ccgggggata aagtctgggt gccagactac gttccggtta cactcgagag      1380
     aacgcgttgc aaaaagggcg gcgtcgctgt cctggtgcat cacctggtac acttccgggt      1440
     cctacccagt ctacagacca agttcattga ggcggtcggc gttgaggtcg acacctcgac      1500
     gggcccwgtc gcagtcgtgg ctgtctactg ccccaagcaa tgtcggatcg ttgacggatc      1560
     gctggccgac tacaagaacg acctactcaa gctgacgcgt cgctttccac gattcatcat      1620
     cgccggcgac ctcaacgccc ggcactcgct ctggggcaat ccaagcaaca acaggaacgg      1680
     gaacgtactt gcggaggatc ttcaagctgg ccattacgtc gtcctgcatc cggagagccc      1740
     gacgttcttc tctcacgctg gcgtcggttc aactctggac atcgccctga cgaacttgtc      1800
     ggagttttgc acaccactcc aagctctcac cgaactctcc tcggatcatc tgccggtgat      1860
     cttcaacctg gaggccaggg tcaacgagag gcagcgtctg aggaggcaca actaccatcg      1920
     cgccaactgg attcgattca agcagtttgt cgacgaccgg gtggaggaga acccggtgct      1980
     agactcgaag gaagccatcg accgtgccct gctagttctc gaggactcct tgaacgaggc      2040
     caaggacctg ttcatcccta cggccgaggt ttcaagtaag tttgtgaaca ttgaccctga      2100
     aaccaagaga atcatgtccc tcagaaacgc ggttaggagg cagtaccaaa gaactgggaa      2160
     cccaggtagg aaggctcttt tcaagaagtt gaataagatt gtctcggtca gggtagaaaa      2220
     gttcaggaac cggcagtttt caaaacacct caagtccatc ccaccctact ctaagccctt      2280
     ctggcgccta actaagatct tgaaaacaaa acccaaacca atcccgcccc tgaaatccga      2340
     tgaccttgcc gtcacgcccg ttgaaaaagc caaccttatc gcgggtcact tcctgacctc      2400
     gcataacctg ggacgtgaca tcgtaagccc aatggagggt cccgtgcttg agagcatcca      2460
     ccaacttgcc cacacgccgt gggtgctgcc ggacgaccaa aagatcacgc tggaggaact      2520
     ctccggctgg ctgaagggac tgaagaacat gaaggcaccg ggcttcgatg ggatcttcaa      2580
     catcgtactg aaacacctgg gggaaaaagc gcgaaccctt cttgtggcca tcttcaaccg      2640
     ctgcctggag ctgggatact tcccgactgc ctggaagcgg gccaaagtag tcccaatact      2700
     caagcccggc aaggatccgt ccagcccgac cagctatcgg cccatcagct tgttgtcttc      2760
     cctaagcaag ctgtttgaga agctgatcta ccgccgcctc cttgcccacg tcgaggaaaa      2820
     caacatcctg ctggacgagc agttcggctt ccgccggggc cattcgacag tccaccagct      2880
     gcagagagtc accaaaatga tccatcgcgc caagtccgtt tcgaaaacca ccgtaatggc      2940
     gctgatggac atagagaagg cgttcgacaa cgtgtggcac gacggtctgg tacacaagct      3000
     gatgcagttc aacgttccca cctacctggt gcaggtgatc tccgactacc tggataggag      3060
     aaccgcccaa gtcaacatcg gaagctctgt atcagacccg tacgattgcc cagctggagt      3120
     tcctcaaggc agcatcctgg gcccgctgct ctacaacctg gacacttccg acattccacc      3180
     tctgcccggc ggcggcacgc tttccctttt cgccgatgat tcggccatca gctacgaggg      3240
     gcggaacatc cgacatctcg tcaccaaact ccagaatggc ctggatgtct acacgcggta      3300
     tctctccgac tggaagattt gcgtgaacgc ggcgaaaacg caagcaatcg tgtttcccca      3360
     ccgcaacacg gatcggctca aaccaactac aaagctgaag gtgcttggaa cggaggtgga      3420
     ctggtcgcag gtcgttcggt atctcggact gctgatcgac tccaagctgc tgtttcggta      3480
     ccacctcgac gacaggatca tcaagggcat cgcgatgctc aagaagctgt acccgatcat      3540
     taaccgtcgg tcgaaagcat cgctgaagaa caagctggca gtctacaaga tggtggtggc      3600
     tccgatgctg ctgtacggtt ccccggtctg gcaggggtgt gccatgaccc accggaagaa      3660
     gctgcaggtg atccagaaca agttcctgcg actgattctg aaccagccct ggagaacaag      3720
     gtcctctgac ctccatcggc tcgctagcat cgaacctgtc gacgcgaggc tggcttcact      3780
     ggccgagaag catcggaaca gggcgctggt gtcggagcac gggtcaatcc gcggattgta      3840
     cccctgagtg agtgtgsttg agtgtttgag agtgtgttag ttttaaggca gcgtgctttc      3900
     tgattaagct aggtaggata ttttaataat tcaaaaaaac agcagcctga aatgcgcgat      3960
     gtagacttta gaattagttt aaaattgcag ttcacttgaa caccataata actaagcctg      4020
     aaaagcagtt gtgctgaatc ccttactctg taaacccctg gattttaaac cgacgaaata      4080
     aaacaaaatt tgatttaatg caaaaaaaaa aaaaaa                                4116
//
ID   Jockey-4_DAn repbase;    DNA;    INV; 3698 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3698
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 385-385 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~93% identical to Jockey-3_DRh from
CC   Drosophila rhopaloa.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1171
FT                 /product="Jockey-4_DAn_1p"
FT                 /translation="KEXPINSNRFKILADADEVEAGESTEVEKRKPKPPPI
FT                 YIREKXXNVLVNKIIELIGKDNFHIIPLVKGNIQETKVQMKSEDNYRVLSK
FT                 YLTENKKNFYTYQLKSSKGLQVVLKGIEPEVTPAEIKKALQEKGFSAKTVF
FT                 NILNRDRKPQPLFKVELEPETKLLKKYEVHPIYNLQYLLHRRITVEEPHKR
FT                 NGPVQCANCQEYGHTRSYCKLRPVCVVCGELHDSAHCPASKDDSNSKKCGN
FT                 CGGNHTANYRGCPVYKELKSRIHQKGIAARTQNGQFTASRSNPEVFFSTAA
FT                 RSSLGPINSDKNXTYASALKSGPATPASRSSFLQSAYQEPNTAQQHQPTEQ
FT                 PKSNFEAMICSLQQSLTEFMSFMRTTMQDLMRNQNLLIQMLVSQQSK"
FT   CDS           join(1057..1683,1650..3560)
FT                 /product="Jockey-4_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQPTTKPDGIYVVYAHNYARFNAKPKSIDSNAGFTTI
FT                 QIMAFLRISTWNANGVSQHKLELAQFLLDNHIDVMLLSETHLTNKYNFQLR
FT                 GYSFYGTNHPDGKAHGGTGILIRSRIKHHYQNKFAKNYLQATSINIQLNTG
FT                 NQLTLAAVYCPPRFNIAEDEFMQFFNTLGDHFIAAGDYNAKHTHWGSRLVT
FT                 PKGKQLYNAIIKAKNMKPTCNYQSQEHEANVDSFVNSLESVLVSAARASTS
FT                 QTINTQSNKKTNLQIEQLVLEKRRLRREWQFHRSPSAKQSFRHASRQLTKA
FT                 LQQEEDYVHRRYIEQLSTSSTKHSLWRAHPTLSSPKETVMPIRNPTGGWAR
FT                 SDADRASTFANHLKNIFQPNPATSAFTLPTLPYEPQLQHEPIEFRPNEIAN
FT                 IIKNQLNPKKSPGCDLITPKMIIELPYCAVCTITQLFNAIAKLGHFPARWK
FT                 KSIIIMIAKPGKDHTIPTSYRPISLLSCLSKLFEKCILTRINTYLRIQEGI
FT                 PSHQFGFREKHGTIEQVNRITAEIRNAFEKREYCTAIFLDVSQAFDRVWLE
FT                 GLMYKIKTMLPCNTHKLLESYLYDRKFAVRCNTDISDEFTVGAGVPQGSVL
FT                 GPTLYVLYTADIPTSTRLTTSTFADDTAILSRSKCPMQATAQLALHLVDVE
FT                 KWLSDWRIKVNEQKCKHVTFTLNRQNCPPLTLNNTLLPQANEVTYLGVHLD
FT                 RRLTWRRHIEAKRTHLKLKASSLHWLINARSPLCLEYKVLLYNSVLKPIWM
FT                 YGSQLWGNASNSNIDIVQRAQSKILRTITGAPWYVRNENIHRDLNILPVKD
FT                 VIAEQKEKYFSKLLSHPNHLARGLTRLSNQSRLRRNDLPTQRPS"
XX
SQ   Sequence 3698 BP; 1255 A; 916 C; 704 G; 819 T; 4 other;
     aaaagaaamg cccattaact caaaccgatt taaaatcttg gcagacgccg atgaggttga        60
     ggcgggcgaa tccactgaag ttgagaaaag gaagccaaaa cctccgccta tctatatacg       120
     cgaaaaawgt tmcaatgttc ttgtcaacaa aattattgag cttattggta aggataactt       180
     ccacataata ccccttgtaa agggcaacat tcaagaaaca aaagttcaaa tgaagtctga       240
     agataactac agagtattat caaaatatct taccgagaat aaaaagaact tttacacata       300
     tcagctaaaa agcagcaagg gcctgcaagt cgtacttaag ggcatagagc ccgaagtaac       360
     gcctgcagag ataaaaaagg cgctacagga gaagggtttt agcgccaaga cagtctttaa       420
     tatccttaac agggatagaa agccgcagcc actctttaag gttgagctcg aaccagaaac       480
     caagctcctg aagaaatacg aagtgcaccc aatatacaat cttcagtacc tgctgcaccg       540
     cagaattaca gttgaggaac cgcacaaacg caatggcccg gtacaatgtg cgaactgcca       600
     ggaatatggc catacaaggt catactgtaa actgcgcccg gtgtgtgtag tttgcggaga       660
     gcttcatgac tccgcacact gcccagcgag caaagatgac agcaactcga aaaagtgcgg       720
     caactgcggt ggcaatcaca ctgctaatta tagaggatgc ccagtctata aggagctgaa       780
     aagtcgcatc caccagaaag gaatagctgc ccgcacccaa aatggacagt tcacggcgtc       840
     cagatcaaac cctgaagtct tcttctcgac tgcagccaga tcctcactag gacccattaa       900
     ctctgacaaa aatktgacat acgcaagcgc cttaaaatca ggaccggcga cacctgcctc       960
     aagaagctca tttctgcaat cagcatatca agaaccgaac acggctcagc aacatcaacc      1020
     aacagagcag ccaaaaagca actttgaagc tatgatatgc agcctacaac aaagcctgac      1080
     ggaatttatg tcgtttatgc gcacaactat gcaagattta atgcgaaacc aaaatctatt      1140
     gattcaaatg ctggtttcac aacaatccaa ataatggctt tcctacggat atctacgtgg      1200
     aacgctaacg gcgtttcgca acataaactt gagttagctc aattcctact cgacaatcat      1260
     atcgatgtaa tgctgctttc ggaaacacac cttacaaaca aatacaattt tcaactacga      1320
     ggatattcat tctacggaac aaatcatcca gatggtaaag cacatggtgg gactggaatt      1380
     ctaatcagaa gccgcataaa gcaccattat caaaacaaat ttgctaaaaa ctacctacag      1440
     gccacatcta taaatataca actaaatact ggcaaccaac ttacactagc cgccgtatac      1500
     tgcccccctc gcttcaatat agctgaagat gagtttatgc agtttttcaa cacacttgga      1560
     gaccacttca tagcagcagg agactacaat gccaagcaca cacactgggg atcccgtctc      1620
     gtgactccaa aagggaagca gctctataat gcaattatca aagccaagaa catgaagcca      1680
     acgtagacag ctttgttaat tcacttgagt ctgtactcgt ctctgcagct cgagcctcaa      1740
     catcgcaaac cataaataca caaagcaata aaaagacaaa tctacaaatc gaacagctcg      1800
     tcctcgaaaa gcggcgttta cgtcgcgagt ggcaattcca cagatcgcca tctgctaagc      1860
     aaagctttag acatgcctca cgtcaactta ctaaagccct acagcaagaa gaagattatg      1920
     tccaccgccg ctatatagag caattgtcaa cttctagtac aaaacactca ctatggagag      1980
     ctcacccaac tctaagctca ccgaaagaaa ccgtgatgcc tattagaaat cccacaggcg      2040
     gctgggcgcg cagcgatgca gacagagcca gcacgtttgc caatcacctt aaaaatatct      2100
     tccaaccaaa tccggccact agtgccttta ctttgccgac tttaccatat gagcctcagc      2160
     ttcaacatga accaatcgag tttcgcccaa acgaaatcgc taatatcatc aaaaaccaac      2220
     taaatccgaa aaaatcacca ggctgcgacc tcataactcc caaaatgatc attgagcttc      2280
     catattgcgc cgtctgcact atcacccagc tcttcaatgc catcgcaaaa cttggccact      2340
     ttccagcgag atggaaaaag tcaattataa taatgatagc aaagccggga aaagaccaca      2400
     caattcccac gtcgtataga cctataagcc tactttcatg cttatctaaa ctctttgaga      2460
     aatgcattct gactcgaata aacacatacc taaggatcca ggaaggaatc ccgtcacatc      2520
     agtttgggtt tcgtgaaaag cacggaacaa ttgagcaggt caaccggata acagcagaaa      2580
     ttcggaatgc attcgaaaaa cgcgagtact gtaccgcaat atttctagat gtctctcaag      2640
     catttgatag agtctggcta gaaggtctaa tgtacaagat caagacaatg ctcccttgta      2700
     atacccacaa gcttttagag tcttaccttt acgacagaaa atttgctgtg aggtgcaaca      2760
     cagatatatc tgacgaattc actgttggag ctggagttcc tcaaggaagt gtactcggac      2820
     caacattata tgttctctac acagcagaca tcccgacaag cacacgacta acaacatcta      2880
     cgtttgctga tgatacagct attcttagcc gctcaaaatg cccgatgcaa gcaactgcgc      2940
     agctagctct tcatctggtg gatgttgaaa aatggctatc agactggcga attaaagtaa      3000
     acgaacaaaa atgcaagcac gttacgttca ccttgaatag gcaaaactgc ccgcccctta      3060
     cgctaaacaa caccctactc ccgcaagcaa acgaggtaac atatctagga gtacacctcg      3120
     atagaagact cacatggcgt cggcacatag aagctaaaag aacccaccta aagcttaaag      3180
     ccagcagcct tcattggctt atcaacgctc ggtctcccct ttgccttgaa tataaagtcc      3240
     tgctgtataa ctcggtactt aaacctatat ggatgtacgg ctcccagtta tgggggaatg      3300
     ccagcaatag caatattgac atagtccagc gagctcagtc gaagatcttg agaacaatca      3360
     ccggggcacc gtggtacgtt cgcaacgaaa acatacatcg cgacttaaac attcttccag      3420
     tcaaagatgt gatcgcagaa cagaaggaaa agtactttag caagctattg tcgcacccta      3480
     accacctggc gagaggtcta acaaggttga gcaaccaatc acgacttcgt cgcaatgacc      3540
     tacccaccca gcgaccgtct tgaggaacgc gcaaccagaa tgcagtctta gtctactgtt      3600
     agttaaatgt taatgttaag atttgaaaac ttattgttag tctcaaaatt aagagaagat      3660
     ccaataaata aaagcaaagt ttaattaaaa aaaaaaaa                              3698
//
ID   Jockey-4_DBp repbase;    DNA;    INV; 3878 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3878
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 712-712 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..1008
FT                 /product="Jockey-4_DBp_1p"
FT                 /translation="MVPGVVSYSAFCRELDALIGDSYSIKALNSGDCAIQC
FT                 NSSDAYRLVARHFREKGTVFHHHQLPEDRPFRMVMRNIHHDVPSEDIIECL
FT                 QEEAHCVLRIYTPRNKVTQLPLNMRFVDIKKADNNKLLKNISAVCRHVVTW
FT                 EKPRKQSGPVQCHRCQEYGHTKAYCTRHYICRECGENHPTLECKLGKDDPR
FT                 CCFHCGSSHAANFRGCRKYLQVAFKQNAQSRLTAATESNTFPSTDLSPNVG
FT                 KESFASVARRNLPIPHKEMENTPPPTHSTENAALNAKLEQLFMRLDRMMSL
FT                 VETLMQAILQTRPPSSTLRNGSX"
FT   CDS           998..3706
FT                 /product="Jockey-4_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGALKIACWNPNGISSKANEIIAFIELYEIDILLLSE
FT                 VRLCSRSTLRIPGFTLHKADHPDDRRHGGAAIFVKSAIAHQLSFTLSEEHI
FT                 QAVSIEISTRRGRFNVASVYCPPAVRWTEADFTTFLSNLGDKFLAAGDWNA
FT                 KHRWWGNYRMCARGRTLSSVLANVNVDIVATGEATCYPYRANATPSAIDFG
FT                 ISKGFRQQQVSVRALTELSSDHLPLLFIINEEAQFHKGVPKMLPAHANVAT
FT                 FKSYIDAHTVLNTPIATCSDLDAYVDSFTSTITEAAQRATPPQRQSGHPPN
FT                 RRAPILTPEARALLDLKRHLRRQFIVSGDPATKQRLSSITNRLRRLLAKTR
FT                 QKNIDTLLEGAGPDNCSDFSIWKLTRGIKRQPLVQSPIQSHTGRWLKNDSD
FT                 KANAFAEHLSATFTPFELPDASHRDEVANFLRAPSQPXRPIRHTTPQEVTL
FT                 QLKALNLKKTPGPDGIDNRAAKALPPKGVLALVKIFNAMLSLGHFPRQWKQ
FT                 ARIIMIPKPSKPLSRIDSYRPISLLSTFSKVFERILLSRLLELPQVEGHIP
FT                 QHQFGFRKSHGCPEQVHRLVNHITHGLEHKLHTVGVFLDVKQAFDKVWHEG
FT                 LLYKIKELLPTPYFAILRSFIADRTFVVAVRDSRSSLAHIHAGVPQGSVLG
FT                 PFLYTMYTSDMPVPSPTTDARMLLATYADDTALLASHTSQLSASAAVQDWL
FT                 NAMERWTRQWNIAINCSKSACVTFSLRLVIDIVHTFNGDAINNATSHCYLG
FT                 VHLDHRLIWNTHITAIKAKCVRKLQKLDWLLGSKSLQLSTKVLLLKAILTP
FT                 TWTYAIEVWGTASKHQLNRLRVVQARAARRASGLPWYVTNQAIQNDLRLVP
FT                 VGDLLNQHSRRYSDRLTSHPNPLASRLADPQTLRRLKRFHPSDLSSRVVQ"
XX
SQ   Sequence 3878 BP; 1062 A; 1134 C; 839 G; 841 T; 2 other;
     aattcaggac aagcccaaac agcagcaccg caagcagctc gatctcccaa ggttccaagg        60
     attatggttc ccggtgtggt tagctactct gccttctgca gagagctgga tgctcttatt       120
     ggagactctt actccatcaa agcgctgaac tcaggtgact gtgccattca gtgcaactcc       180
     tccgacgcct acaggcttgt tgccagacac ttccgcgaaa aaggaactgt tttccaccac       240
     caccagctgc cagaagaccg accctttcgc atggtaatga ggaacattca tcatgatgtc       300
     ccatcggagg atattattga gtgcctgcag gaagaggctc actgcgttct gcgcatctat       360
     acccctcgta ataaggtaac acagcttccg cttaacatga ggtttgtgga catcaagaag       420
     gctgacaaca acaagcttct taagaacatc tctgctgttt gcagacacgt agtgacctgg       480
     gagaagccac gcaagcaatc cggtcccgta caatgccata gatgtcagga atacggacat       540
     acaaaagcat actgcacacg gcattacatc tgcagagaat gcggtgaaaa ccaccctacc       600
     ctggagtgca agcttgggaa ggacgaccct aggtgctgct ttcactgcgg cagctctcac       660
     gcggccaact ttagaggatg ccgcaaatat ctgcaagtcg catttaagca aaatgctcaa       720
     tcaaggctca cagcagccac agaatcgaac acgtttcctt caaccgatct ctcacccaac       780
     gttggtaagg aatcatttgc aagtgtagcc agaagaaacc tacctatccc tcacaaagag       840
     atggaaaata ctccccctcc aacacattcc accgaaaacg ccgctctgaa tgccaaactg       900
     gaacagcttt tcatgaggct cgacaggatg atgtccctag tagagactct aatgcaagca       960
     atcctgcaga cgcgtccacc ctcctctacc ctccgcaatg ggagckctta aaatagcctg      1020
     ctggaacccc aatgggataa gctcgaaagc aaacgagatc attgctttca tagagcttta      1080
     cgaaatagac atccttttgt tgtcagaagt ccgtctctgt tcgcggtcca ccctcaggat      1140
     ccctggattc actttgcaca aagccgatca tccggatgac cggcgacatg ggggcgcagc      1200
     gatcttcgtc aagtcagcca tagcccatca actctctttc actctttcgg aagagcacat      1260
     acaagccgtc tccatcgaga tatctacaag aagagggagg tttaacgttg cttcggtgta      1320
     ctgcccccct gctgtcaggt ggacggaagc agacttcacg actttcctct ccaatctcgg      1380
     agataagttt cttgctgcag gtgactggaa tgccaaacac agatggtggg gcaactacag      1440
     gatgtgtgcc agaggccgga ccctcagctc tgtcctggcc aatgtcaatg tcgacattgt      1500
     agcaactgga gaagccacat gctaccccta tcgtgcaaac gccaccccca gtgcaattga      1560
     ctttggcatc tcaaaaggct tcagacaaca gcaggtctct gtcagagcac tcaccgagct      1620
     atcttccgac cacctcccgt tgctcttcat aataaacgaa gaagctcaat tccataaagg      1680
     agtccccaaa atgctacctg cgcatgcaaa cgttgccact tttaagtcct acatcgatgc      1740
     tcacaccgtg ctcaacacac caatagcaac ctgcagcgat ctggacgcat acgtagatag      1800
     cttcacctct acaattactg aagccgccca gagagctacg ccacctcagc gccaatctgg      1860
     tcacccacct aatagaaggg caccaatact aaccccggag gcaagggcac tcctggatct      1920
     aaaaaggcac ctcagaaggc aattcattgt gtcaggcgat cctgcaacta agcagcgtct      1980
     atctagcatt actaatagac tgcgcaggtt gctagcgaaa acccgccaaa agaacatcga      2040
     taccctgctg gagggagctg gcccggacaa ctgcagcgat ttttcgatat ggaagctaac      2100
     gagaggaatt aaaagacagc cgcttgtaca atccccaata caaagccaca ctggccgctg      2160
     gcttaagaac gactccgaca aagccaacgc ttttgcggaa catctgtctg ccaccttcac      2220
     tccttttgaa cttccagacg cttcacaccg cgatgaggtt gcaaacttct tacgcgctcc      2280
     ctctcagcca kcgcgcccca tcagacacac cacgccgcaa gaagtcacgc tgcagttaaa      2340
     ggcgctcaat ttaaaaaaga ctcctggacc cgatggcatc gacaatcgag cggccaaggc      2400
     tcttccaccc aaaggagtgc tagcgctggt gaaaattttc aacgccatgc taagcctggg      2460
     acattttcca agacagtgga agcaagcccg gatcatcatg atcccaaagc caagcaagcc      2520
     actatctcgc atcgactcct accgcccaat cagcctgcta tccactttct cgaaagtgtt      2580
     cgagcggatt ctactcagcc gactgttgga gctaccacaa gtagaaggcc atattcctca      2640
     acatcagttc ggcttcagaa aatcccacgg ctgcccagaa caagtccatc gcctggtcaa      2700
     ccacatcacc catggactcg agcataaact gcacactgta ggcgtctttc tcgacgtaaa      2760
     gcaagccttt gacaaggtgt ggcacgaggg ccttctttac aaaatcaagg aacttctccc      2820
     tacgccctat ttcgccatcc tgaggtcctt cattgccgat cgaaccttcg ttgtagcagt      2880
     aagggactca cgatccagct tggcacacat tcacgcagga gtgccccaag gaagtgtact      2940
     tggtccgttc ctatacacga tgtacacgag tgatatgcca gttccgtcgc ccaccacaga      3000
     cgcccgtatg cttctggcta cttacgccga cgacacggcc ctgcttgcat cccacacgtc      3060
     tcagctgtca gcctcggctg ctgttcagga ctggctgaat gcaatggagc gctggaccag      3120
     gcaatggaac attgccataa attgcagcaa gtcggcttgc gtcacttttt ccctaagact      3180
     cgtgatcgac atcgtacata ccttcaatgg tgacgctatt aataacgcca cctctcactg      3240
     ctacttaggt gtacacctag atcacaggct catatggaac acccacatca cggcgatcaa      3300
     agccaaatgt gttcgcaaac tacaaaagct cgactggctc ctgggatcca aaagcctcca      3360
     gctttcgacg aaagttttgc tgctcaaagc aatcctcacg ccaacctgga cgtatgcgat      3420
     cgaggtatgg ggcaccgcat ccaagcacca gctaaacagg ctgagggtag tgcaggcacg      3480
     tgctgctcga cgggcatccg gacttccctg gtacgtgaca aaccaggcca tccaaaacga      3540
     cctacgcctt gtcccggtgg gcgacctcct aaaccaacac agccgacggt actcggacag      3600
     gctaacgagt cacccaaatc cactggctag caggctggcc gacccgcaaa ctcttaggcg      3660
     cttaaagaga tttcacccca gcgatctgtc ttcccgtgtt gttcaataat attgtaaact      3720
     aatgtaaata actgtaaatt attgtataaa gtctaggccc atatcccata tgtaccatat      3780
     tcaccccacc ttctaagcgc ccggttatgt tcaaatggtt ttgaacgatt ccggcgacta      3840
     aaataaaatt taacttgttt taaaaaaaaa aaaaaaaa                              3878
//
ID   Jockey-4_DEl repbase;    DNA;    INV; 4933 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4933
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 557-557 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           323..1987
FT                 /product="Jockey-4_DEl_1p"
FT                 /translation="MEKSSAQSRPRNGCDKFEEMRKVAGADPEVIRSQLRA
FT                 KSADLSAFLASMPTQSTITKSMVTISSNTTTSVTCTITNVQASVVCTPTYT
FT                 EAAIVASSMYPTMSTDSNLTKCLFQAQDRNVHRKRKGVTQSPLSILTPPPN
FT                 RKTKRQITVPPNEAASTSTAARLGDNRYEILADEAETMDQDLSDADSDNDD
FT                 PTAPHVVGQPAKSNKPPAICVPSVSDPLSLEQALNQSIGSSNYNIRTSRFG
FT                 VSRIYTTNSDAFRAAVKTLTTLNCQFWHHQLKEDKPYRVVLKGIHANVPKS
FT                 QIEQSFSDHGFEVLNIYCPKKTDWKNIQVNEEDNENTINYKTRQNLFYINL
FT                 KQCPNVAEALKITQLGRYRVTVERASRRKDLLQCQRCQIFGHSKNYCLQAP
FT                 ICGKCSGPHMTGSAHCTSDIYLCVNCGGDHASTDKVCPVRAEKYKKLKPRP
FT                 RLPMTYSPVTNNPTQRSSRGYISGEALRTNISYADIVRPNIVQTRTNKSLQ
FT                 SDACSPSDSSLNNKFAALESSIRAINSRMDQLFKLIQETVEANKAFRELVQ
FT                 VLISRMPK"
FT   CDS           1987..4734
FT                 /product="Jockey-4_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MTQPILKIGLWNARGLIRGSEELRLFLNAHNIDIMLA
FT                 TETLMRDGQRIYLPGYLTYHALHPSGNCRGGSAVIIRSSLSHSPLPPTSSN
FT                 DRQIARAQPQTSEGTVTIAAVYLPPRESWTKTEFESMFSALGNKFIAGGDY
FT                 NAKHVWWGNSRGCPRGNLMQEVIANGQYQVLATGEPTFYSYNPLIAPSALD
FT                 FFVTNGFTTGRLNVRTLHELSSDHVPVLAELHTTPLRKPQRSRLLAHGANI
FT                 NVFKAHLEQLSEVNIQMLEEGDIDSAISLFMSKINQAAELAAPRNRHDTYA
FT                 PRPLQLPPRIAALLSLKRRVRREYARTGDYRIQQIHSRLANCLHKALARRK
FT                 QDQIDNFLENLGTDASTNYSLWRITKRYKAQPTPKSAIRNTTGGWCRTSQE
FT                 KAEVFAKNLEQRFRPYDYATERQCQQVEEYLESPFQMSLPVSPVTLSEVKV
FT                 LVSKMSPKKTPGEDLLDNRTIRLLPDKALQFLVLIYNSILNIGYFPKVWKS
FT                 ASIIMILKPGKLPTNVDSYRPISLLPSLGKIMERLILNRLLTFENVTRAIP
FT                 KFQFGFRLQHGTPEQLHRVVNFTLEAMENKEYAVAAFLDIQQAFDRVWHPG
FT                 LLYKAKSLFTPQLFQLVKSFLEERTFHVSDDGYKSTVKRISAGVPQGSVLG
FT                 PTLYSIFASDMPTHTPITEVEEKDVLIATYADDTAVLTKSKSILAATFALQ
FT                 EYLDAFQLWAENWNVRINADKCANVTFTNRRETCPGVSLNGSPIRHHQAYK
FT                 YLGITLDKKLTFKRHITAIQHSFRSKVARMSWLLAPRNRLSLGCKVMIYKA
FT                 ILAPSLFYGLQVYGIAAKTNLNKIRILQSKTLRRISGAPWYMRTSDIERDL
FT                 KVPKIGDKLQSISKKYMERLNAHPNSLARKLGTAAFNNADPQTTVRRRLKR
FT                 HHPQDLPDRVLI"
XX
SQ   Sequence 4933 BP; 1522 A; 1210 C; 1014 G; 1187 T; 0 other;
     agttcccccc ccgctttcgt agagtaaaga cgtgtgctcg caattggcaa aaaacctcac        60
     gcaagtgata aacattttcg ttgcctgtgt gcttatcttg tacacaagat ctatttttag       120
     tcactgctag tgcggtgacg gtttcttatc gcgaatcttg ccaaaaatta acaagtgtta       180
     agctgtgctt tgttttgccc ctcgccctgc gcacctgcgc aagcgagagg ttgtcaccaa       240
     cttaccttac agtcttctta acgtgtgaag tgaatatcaa ttgcattata cgacatatga       300
     aagtataaag tcagttgtta taatggagaa atcatctgct caatcgcgac ctagaaatgg       360
     gtgtgataag ttcgaggaga tgagaaaagt agctggtgca gaccctgaag taatacgctc       420
     ccagctccgt gccaaaagtg ctgacttatc tgccttcctc gcaagtatgc ctacacaatc       480
     aacgatcacc aaatcgatgg tgacaattag cagcaatacc actactagtg taacctgcac       540
     aattaccaat gtccaagcta gcgtggtctg tactcctaca tacaccgaag ctgcgatcgt       600
     agcgtctagc atgtacccaa ctatgtctac tgacagcaat ttgacaaaat gcctcttcca       660
     agcacaagat cgtaatgtcc acaggaaacg caaaggtgtg actcagtccc ctttatctat       720
     cctcactccc cctccgaacc gcaaaactaa gcggcagatc actgtgcctc ctaatgaggc       780
     ggcctctaca tccactgccg cgcgtttggg ggacaatcgc tatgagattt tggctgatga       840
     agcggagact atggaccaag acctgtcgga tgccgactct gacaatgatg acccgactgc       900
     cccccatgta gttggacaac ccgctaaatc aaacaagccg ccagctatat gcgtaccgag       960
     cgtaagcgat ccgctttcct tggaacaggc ccttaatcag agcattggtt cctctaatta      1020
     taatatacgt acctctaggt ttggtgtttc cagaatctat acaacaaact ccgacgcttt      1080
     ccgtgcagct gttaaaactc taacaacgct gaactgtcaa ttctggcatc accaacttaa      1140
     ggaagataaa ccctacagag tagtgcttaa aggcatccat gctaatgttc ccaaatcaca      1200
     gattgaacaa tcatttagtg accacggctt tgaggtgcta aatatatact gccccaaaaa      1260
     gacagactgg aagaacatac aggtcaatga ggaagacaat gaaaatacaa taaactacaa      1320
     aactagacaa aatttattct atatcaacct aaaacaatgt ccgaacgttg cagaggccct      1380
     aaaaataact caacttggca gatacagagt cactgttgaa cgtgcctccc gtagaaaaga      1440
     cctattacaa tgtcaaagat gccaaatttt tgggcactct aagaactact gtctccaggc      1500
     ccctatttgt ggtaaatgta gtggtcctca tatgaccggc tcagcacact gcacaagcga      1560
     catatatttg tgcgtaaact gtggaggtga tcatgcctct acagacaaag tctgccctgt      1620
     cagagctgaa aaatataaga aactaaagcc gaggcctagg ctcccgatga cttatagtcc      1680
     tgtcacaaac aaccccactc agcgctccag tcgtggatac atatcaggtg aggcattaag      1740
     gaccaacatt tcctatgctg acattgtccg acccaacatt gtccaaacaa gaactaataa      1800
     atctctgcag agtgacgcat gctcaccctc tgactctagc ctcaacaaca aattcgctgc      1860
     gctagaaagc tccatacgtg ccatcaactc cagaatggac caactattta agcttataca      1920
     ggaaactgta gaggcgaaca aagctttcag agaactggtc caagttctta tttcacgaat      1980
     gccgaaatga ctcaaccaat cttaaaaatc ggattgtgga acgctcgggg attaattaga      2040
     ggttctgaag agcttcgatt attcctcaat gctcataata tagatataat gcttgccaca      2100
     gaaacactca tgcgcgatgg tcagcgcatc tacctgccag gttatctgac ttatcacgcc      2160
     ctccacccca gtggtaactg taggggaggc tctgcagtca ttataagatc ttccttaagt      2220
     catagccccc tgccacctac ctctagtaat gacaggcaga tagctagagc tcagccgcaa      2280
     acatcggagg ggactgtcac aatagctgct gtatatctgc ctccaaggga aagttggaca      2340
     aaaaccgaat ttgaatccat gttttccgct ttaggcaaca aatttattgc tggaggtgat      2400
     tataatgcca aacacgtatg gtggggtaat tcaagaggct gccctagggg caatctgatg      2460
     caagaagtca ttgcgaatgg gcaataccaa gttctggcta cgggcgaacc cactttctac      2520
     tcctacaatc ccctaatagc accgtcagca ctagacttct tcgttactaa tgggttcaca      2580
     acgggcaggc taaatgtgcg aacacttcac gaactgtcgt cggaccacgt cccggttttg      2640
     gctgaactgc ataccacgcc gttgagaaaa ccacaacgat cacgattact tgcccacggt      2700
     gccaacataa acgtcttcaa agcccacctt gaacagctga gcgaggttaa tatacaaatg      2760
     ctagaggagg gggatattga tagtgccatc agccttttca tgagtaaaat aaaccaggct      2820
     gctgagcttg ctgcacccag aaaccggcat gacacatacg ctcctagacc actccagtta      2880
     ccacccagaa ttgcggcctt gcttagtctg aaacgtagag taagaaggga atacgcaaga      2940
     acaggagatt atcgtatcca acagatacac agtaggctgg ccaactgtct acataaggcc      3000
     cttgccagaa gaaagcagga ccaaatagac aactttcttg aaaacttggg gacagacgcc      3060
     agtacaaatt actcattgtg gcgaatcacg aaaaggtaca aagctcagcc caccccaaaa      3120
     tcagctataa gaaatactac aggtggctgg tgtcgcacta gccaggagaa agctgaagtg      3180
     ttcgctaaaa accttgagca gcgttttcgg ccttacgatt atgcaacgga aaggcaatgt      3240
     caacaagttg aagagtactt ggaatctcca tttcaaatga gcctgcctgt tagtcctgta      3300
     acgctgtcag aagtaaaggt cctagtatct aaaatgtcgc caaagaaaac tcctggagaa      3360
     gatcttcttg acaacagaac cattcgactt ctaccagata aagccttgca gttccttgtg      3420
     ctgatataca acagtatatt aaatattgga tattttccga aagtctggaa atcggcgagt      3480
     ataataatga tactcaaacc tggaaaactg ccgacaaatg tggactcgta caggcccatc      3540
     agtctacttc cttcactggg gaaaattatg gaaaggctta tcctaaacag gctactaact      3600
     ttcgaaaatg tcaccagagc gatcccgaaa ttccagttcg gtttccgcct acagcacggc      3660
     actcctgagc aactgcatag agtagtcaac tttacgctag aagccatgga aaataaagaa      3720
     tacgctgtgg ctgccttcct tgatattcaa caggcttttg acagggtctg gcaccctggg      3780
     cttctgtaca aagcgaagag tctgttcacg cctcaactgt tccagcttgt aaaaagtttc      3840
     cttgaagaac gcacattcca cgtctctgac gatgggtaca aatcgaccgt caaacgtatt      3900
     tctgctggag tcccacaagg tagcgtactt ggcccgaccc tgtattccat tttcgcttcg      3960
     gacatgccga ctcacacacc aatcacggaa gttgaagaaa aggatgtgct aatagctacc      4020
     tacgctgatg atactgctgt actcacaaaa agtaaaagta tcttagcagc cacatttgca      4080
     ctacaagaat acctggatgc atttcaacta tgggctgaga actggaacgt gcgaatcaac      4140
     gctgacaaat gcgccaatgt gacgttcaca aaccgccgag aaacttgtcc aggtgtcagt      4200
     ctgaatggaa gtccaatcag gcaccatcag gcgtataaat acctaggtat caccctagac      4260
     aagaaactta ccttcaagag gcatatcacg gctatacagc actccttcag gagcaaggtt      4320
     gctcgtatgt catggctact tgctccacgc aacaggttat ccctgggctg caaggtcatg      4380
     atttacaagg ccatactagc gcccagtctc ttctacggtc ttcaagttta tggcattgcg      4440
     gcgaaaacta atcttaacaa gatccgaatc ttacagtcta aaactttgag gaggatctct      4500
     ggggctcctt ggtatatgcg aaccagcgac atagaacgcg acctcaaggt gcccaaaatc      4560
     ggcgacaaac tgcagtccat ttcaaagaag tacatggaac gactcaatgc gcatcctaac      4620
     agcctagcca ggaaacttgg aactgcggcc tttaataacg ctgaccctca gacaaccgtt      4680
     agaagaagac tgaagcggca ccaccctcaa gacctccctg accgggttct gatataatat      4740
     gtattaactt gaaaaacaaa attaacaata tttctaccta aaatgtaacc ttaaattact      4800
     agtcttaaga aaaacacaca gacaattgta tttgaattaa ttaatagact gattagatta      4860
     agctgccact tgggtagcag tgtgctaatc gaataataaa aatatacata taatattaaa      4920
     aaaaaaaaaa aaa                                                         4933
//
ID   Jockey-4_DEu repbase;    DNA;    INV; 4227 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4227
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 950-950 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..1366
FT                 /product="Jockey-4_DEu_1p"
FT                 /translation="MSNDGGSDARRYSWQKVPINPRPAKRKNETSPLLSRK
FT                 IPAVGAGPSKXNLSNQFALLAEPENITDTNQLSSDPILNEETDKDTPAVSE
FT                 KPPPIFVSNVGDINGFLLYLSPSEFTYKTQRDGNIRIMVKKVEKYREIIRL
FT                 LKVDQIDYHTFQLKQERAFRIVKNIHPTTLTESIKLAIESHGHKVRGIHNI
FT                 KSRITKEPLPMFFIDLEPDKSNTEVYNIKHINNAMVTIEPPKRVSEMVQCF
FT                 RCQEYGHTKTYCNKKFKCVKCAENHLTKNCTKQENDPATCANCFENHAASY
FT                 KGCKIYQAITKNKSSQPTRKPVTSETHDRLRVAINMQRIPSNENAYSRQPN
FT                 YAQVVRGETATQEISALDRIEQLLVKQSELTTNLLNMIMLLVNKLCK"
FT   CDS           1360..4050
FT                 /product="Jockey-4_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQVDLRIAIWNANGLSNHRNEITLFIKTNNIDILLIS
FT                 ETHFTDKNYLSIHGFHIINAYHPSGRAQGGSAVIVKNTLKFKTLDSISTNN
FT                 MQVAAIQIKCLHSDISVAAVYLPPRYACNLDHFNCLFQGLGSRFISGGDYN
FT                 AKHPWWGSRLINPKGAELYKCVTNNNYSTLSTGKPTYWPTDPSKIPDLLDF
FT                 IVYAGIPQHNLHIEENFDLSSDHSPIIVTYGTTVSYKQKPYRVINGRTNIR
FT                 TFKNWLENQTCLNVSLKTGDEIDTAIEDLTNSIHTAGHMFTPPPDYSLDRQ
FT                 TFLPLELRSQISEKRKLRKIWQTTRSPNDKRKFNKAAKELNTRLWKIKNEA
FT                 TEEYLRNLDPYTADINYSLWKATRYLKRPTRRVTTIEDSQGRRCRCNSEKA
FT                 EAFAAHLSSVFKPNLENDPNTVAKVLSFLESPCQMSLPLKPTCFSEVEQEI
FT                 KKLNKKKSPGYDKICGNTIKNLPPKCTRLLSYIFNAMLRLEYFPSQWKCAE
FT                 VIMIPKPNKPERAITSYRPISLLVAFSKVFERILLRRLLPVLEELNIIPEH
FT                 QFGFRRGHGTIEQCHRITQTIINAFECKKYCTGVFLDVKQAFDKVWHEGLL
FT                 YKIKKWLPAPYFLMIKSYLENRLFYVQEQDESSRICTAYAGVPQGSVLGPV
FT                 LYTIFTADLPSSNNTEIATYADDTAIIASSNDLNAASLLIQDELGQIEIWL
FT                 RKWRIVVNAQKSIQVTFSLRPGNCPPVTLNGSTIPVSDTVKYLGVHLDRRV
FT                 TWKQHIKAKQAQLKMKTSKMYWLLGPRSQLSLENKIILYKAVLRPVWTYAM
FT                 QLWGTASNSNIEILQRYQNKVLRTITGAPWYMTNFDIHKDLKIPTVKELMT
FT                 ANAEKYINRLHEHENILALGLLDNGDTRRRLKRFHILDLPHRNM"
XX
SQ   Sequence 4227 BP; 1544 A; 928 C; 739 G; 1013 T; 3 other;
     gataattaaa ttatcctcgt tttgggagca taaatttcat aataacaaac aaatttttaa        60
     tcacttttag cggtcgctwt ctaactctca aagagtacgg tcgcgcacgc acaatctgtc       120
     gaagtcgtta agcacaattt cgtaaacatc ttacacaaaa acaatttgca attctagctg       180
     ctataagcag caaaacatgt cgaatgacgg aggaagcgac gccagaagat attcttggca       240
     gaaggtgcca atcaatccac gtccagctaa acgtaaaaat gaaacctctc cactcctttc       300
     aagaaaaatt ccggctgtag gagctggacc ttccaaasgc aatctatcaa accaatttgc       360
     tttattggcc gaaccagaaa atataacgga caccaaccaa ttatcatcgg acccaatact       420
     aaacgaggaa acggataaag acactccagc agtctctgaa aaaccaccac caatttttgt       480
     atctaacgtc ggtgatataa atggattctt actttacctt agtccatccg aattcactta       540
     taaaacacaa agagacggca acattcgcat catggttaaa aaagtcgaaa aatacaggga       600
     aataatcagg ctactaaaag tggaccaaat agactaccac acatttcagc ttaagcagga       660
     aagagcgttt agaattgtca aaaatattca ccccactaca ctaactgaat ctattaagct       720
     tgcaatagaa tcacatggtc acaaagttag aggaattcac aacattaaaa gccgcattac       780
     taaggagcca ctaccaatgt tcttcataga cctagaacca gataaaagca acactgaagt       840
     ctataacata aaacacatca acaatgctat ggttacaatt gaacctccaa agagagttag       900
     tgaaatggtg caatgcttcc gttgccaaga atatggacac accaaaactt actgcaacaa       960
     aaaatttaag tgcgttaaat gtgctgagaa ccaccttacc aaaaactgca ctaaacaaga      1020
     aaatgatcca gcaacttgtg caaactgctt tgaaaatcac gctgctagct acaaaggctg      1080
     caagatctac caagccatta caaaaaataa gtccagtcaa cccaccagga agccggtaac      1140
     ttcagaaact catgatagac taagagtagc aattaacatg caaagaattc caagcaatga      1200
     aaacgcatac tccaggcaac caaattatgc acaagtagtg cgcggtgaga ctgcaacaca      1260
     agaaatatcc gctctagata gaattgaaca actacttgta aaacaatctg aacttacaac      1320
     taatttactc aacatgataa tgttgttggt aaataaatta tgcaagtaga tcttcgcata      1380
     gccatatgga atgctaatgg gctttccaac catcgcaacg aaataacctt atttattaaa      1440
     accaataaca ttgacatact acttatatca gagacacact ttaccgacaa aaactactta      1500
     tcaatccatg ggtttcatat tataaatgct tatcatccat ctggcagagc acaaggcgga      1560
     agtgcagtta tagttaaaaa cactctaaaa ttcaaaactt tagatagtat cagcacaaac      1620
     aacatgcaag ttgcagcgat ccaaataaaa tgcttacact cagatatctc tgttgctgca      1680
     gtttaccttc caccaagata tgcttgcaat ctcgaccact tcaattgtct ctttcaagga      1740
     ctcggcagcc ggtttatttc tggaggtgac tataatgcca agcatccctg gtggggatcc      1800
     aggctcataa acccaaaagg agcagaacta tataaatgtg taacaaacaa caactattcc      1860
     actctatcca ctggcaagcc aacctattgg ccaactgacc caagtaaaat cccagacctg      1920
     ttggatttca ttgtttatgc aggaatacct caacacaatc ttcacattga ggagaacttt      1980
     gatttgagtt cagatcactc tccgatcatt gtgacgtatg gtactacagt aagctacaag      2040
     caaaagcctt atagagtcat taatggaaga acgaacataa ggacatttaa aaactggctc      2100
     gaaaatcaaa cttgcttgaa tgtatcactg aagacgggag atgaaatcga cactgcaatt      2160
     gaagatctca ctaactcaat tcatactgct ggccatatgt ttacccctcc tccagactac      2220
     agccttgaca ggcaaacttt tctacctcta gagctgagat cacaaatatc cgaaaaaaga      2280
     aagcttcgta aaatatggca aacaacgaga agcccaaacg acaaaagaaa gttcaacaag      2340
     gccgccaaag aattgaacac tagactttgg aaaatcaaaa acgaagcaac agaagaatat      2400
     ttaaggaatc tagatccata tactgctgac ataaattata gcctctggaa agcaacgaga      2460
     tacctaaagc gaccaaccag aagagtcacc acaattgaag acagtcaagg acgaagatgc      2520
     agatgtaact ctgaaaaggc tgaggcattc gctgcacacc taagctcagt attcaagccc      2580
     aatctggaaa acgatcctaa tacagtagcc aaggtgctgt ccttccttga atctccttgc      2640
     cagatgagcc tcccgctaaa accaacctgc ttctcagaag tggaacagga gataaaaaag      2700
     cttaacaaga aaaaatcccc aggctatgat aaaatctgtg gtaacacaat taaaaatctc      2760
     ccgccaaaat gtacccgctt attatcctac attttcaacg caatgctcag gttagagtac      2820
     ttcccaagcc aatggaaatg cgcagaagta attatgattc ctaagcccaa caagcctgaa      2880
     agagctatca cgtcataccg tcccattagt ttgctggtgg cattctctaa agtatttgag      2940
     cgtatacttt taagaagatt gctgcctgtw ctggaagaac taaacatcat acccgaacac      3000
     cagtttgggt tcagaagagg acacggtacg attgaacaat gtcatcggat aacacaaaca      3060
     attatcaatg cgtttgaatg caaaaaatat tgtactggag tattcctaga tgttaaacag      3120
     gcgtttgaca aagtttggca tgaagggctg ttatacaaaa ttaagaaatg gctacctgca      3180
     ccatacttcc tgatgataaa atcttatctg gaaaacagac tattctatgt ccaagaacaa      3240
     gacgaatcgt ccagaatatg caccgcctat gctggagtcc cacaaggtag tgtgttgggc      3300
     cctgttctgt acacaatatt tacagccgac ctaccatcat caaacaacac tgaaatagcc      3360
     acgtatgctg acgacaccgc tattatagct tccagcaatg acctcaatgc tgcatcgctc      3420
     ctgattcaag atgaacttgg tcaaattgaa atctggttaa gaaaatggag aatagttgtc      3480
     aatgcacaaa agtctatcca agtcacattt tcactgagac caggaaactg ccccccagtt      3540
     acattaaatg gctccaccat tccagtgagt gacacagtaa agtacctggg agtacatctg      3600
     gatagacggg ttacatggaa gcaacatata aaagcaaaac aagcccagtt aaagatgaaa      3660
     acaagcaaaa tgtactggtt gctaggaccc cgctctcagc taagcctaga aaacaaaata      3720
     atactttata aggctgtcct aaggccagta tggacatacg cgatgcagct ctggggaaca      3780
     gcaagcaatt ctaatattga aatcctgcaa aggtaccaaa ataaggtcct tcgtaccata      3840
     acaggcgcac cttggtatat gaccaatttc gacatccaca aggatctcaa aatacccaca      3900
     gtcaaggagc tcatgacggc aaatgctgaa aagtatataa acaggctgca cgaacacgaa      3960
     aacatactag cacttggcct actggataac ggtgacaccc gcaggcggct aaaaagattt      4020
     catatattag atctgcctca cagaaacatg taaaatatgt aaaaatttgc aaatatgtat      4080
     atttgtactt gtatatatgg attaggctca ctggagtcta aaccatcctg ctagcttata      4140
     agtaattaac aaatttgctt attgttttcg ttttataaaa cagaatggca aataataaag      4200
     tatagtaatt aaaaaaaaaa aaaaaaa                                          4227
//
ID   Jockey-4_DF repbase;    DNA;    INV; 4749 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4749
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 972-972 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1920
FT                 /product="Jockey-4_DF_1p"
FT                 /translation="MPAGKSLISATGKPTSQSRVQQQQKQDERRLSSVRNN
FT                 AYVAIVSETVSNEHATTKAMSLTASERARSLSPALLSSSSAAMTQSWSSQC
FT                 PSPLSPLIALTTSALALTSTVPSLTTVVSTTTTTTSTSVANLWPILSSQLK
FT                 CVSAASLPQTTLVQTGIDRYVQIKRKLSPQKTNANLPKVSKTSGNNNKATS
FT                 ENRFSILGDLGEDEGQPPQPTKDVKPPPIYIREHNCSELINNLKQKIGPNN
FT                 FYVTNLKRGNISETKLQIKNESNYRTVTNFLDHVPVNYYTYQLKSSKGLQV
FT                 VVKGIESTVPVADIAEGLKEQGFDVKHVTNIINRAKIPQPLFKIELAPETA
FT                 PLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEFGHTRSYCTLR
FT                 SVCVACGDLHCIDACLRNKEDPATRKCSNCGGNHTANYRGCPIYKELKTRL
FT                 TQRRSKPTTVQHVAQPNYFAPSVTTPGVSFARALRYSGASPVPVSLXQPEV
FT                 VHSLQPIPNRKDDSLPEQNTQRTTQPTTQQNQLPPPPAHSGLEHTLATLTK
FT                 IMLSIQSTLQDLTRNQNLLLELLIKQSK"
FT   CDS           1920..4583
FT                 /product="Jockey-4_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNPLKICFWNANGVSQHKYELLQFLNNHDIDIMLLSE
FT                 THLTNKNYFYLTGYVFHATNHPDGKAHGGTGILVKQRIKHHPQDTFATNYL
FT                 QATSIRINITSGPLTLSAVYCPPRFNIPENEFLGFYNSLGNCFVAAGDYNA
FT                 KHHYWGSRLINPKGRQLYNAIIKPSNKLDFVSPGRPTYWPADPNKQPDIID
FT                 FAVTRRVPPRLIRVETLAELSSDHSPVLLCLFEHPQLVKRPQFLTSNTTNW
FT                 LKYKKYISSHIEIEPNISCEADIENSLKHIADVMSSAAKHSTPDPLATSLP
FT                 NTMRTNMQIQSLLQEKRRLRRNWQTHRSPATKQSFKEACRKLSKALITEKN
FT                 QAQRAYIAXLSPTSNKFPLWRAHPNIQPPIEPDFPIRSPXGVWARSDEEKA
FT                 NIFASHLQNVFQPHPPANQFTLPNIPPAEPSSTIILETSTVTKAIAEQMNP
FT                 KKAPGHDLISPKMIIELPACAVKXITTIFNSILKWGYFPLQWKKSVITMIP
FT                 KPGKDKSQPSSYRPISLLPCLSKLFEKLLSCHLRTHLQNNRAIPLHQFGFR
FT                 EKHGTIEQVNRITAEIRTAFEYREYCSAIFLDVSQAFDRVWIEGLVYKIKT
FT                 VLPQNTHKLLESYLKDRVFTVRCKNFFSENHKIKAGVPQGSVLGPILYVLY
FT                 TADIPTSSQTILSTFADDTAIISRSKYPKTATAHLKNHLTDVEKWFADWRI
FT                 QVNDQKCKHITFTLNRETCPPLSLNNKQIPQVNEVTYLGIHLDRRLTWRRH
FT                 IEAKKTSLKLKANSFHWLINPRSPLPLEYKVLLYNSCLKPTWTYGSELWGN
FT                 ASSSNIEIIQRVQSKILRTITGAPWYIRNANIHRDLDIKPVKEEIDSKVLK
FT                 YENRLSIHPNQLARQLRRLRSHSRLQRNDRPLLPN"
XX
SQ   Sequence 4749 BP; 1585 A; 1252 C; 838 G; 1064 T; 10 other;
     aatktwactt cgccccgtgc agacgtgttc ttkatckctc cgccaagcga gtcaattagt        60
     ttaatattta agtgaaataa aaactgaaaa tagtagcgaa aagacgctgg cagcaatgcc       120
     aaaccatatt agctcccttt ctttgttttc taacagatca aagtgaagaa aacaattaat       180
     ttcaaacaaa atacaatgcc tgcgggtaaa tcattaataa gtgcaactgg caaacccacg       240
     agtcaaagtc gagtgcaaca acaacaaaag caagacgaac gccgactgtc ttctgtccgg       300
     aataatgctt atgtagcaat tgtttcggag acagtaagta acgaacacgc aacaacaaaa       360
     gcaatgtcat tgactgcttc cgagagagcg cgctctctgt cacctgcact cctaagctca       420
     agcagcgctg ccatgaccca gtcgtggagc tcccaatgcc catctccact ctcaccactc       480
     attgcactga ctacgtcagc tcttgcgctg accagcacgg tgccctctct tacaactgtt       540
     gtttcgacga cgacaacaac aacttcaacg tcggtggcaa atctgtggcc gatattatca       600
     tcgcaattga aatgtgtctc tgctgcctct ctcccacaaa ctacgcttgt acagaccggg       660
     atcgatcggt atgtacaaat aaaaagaaag cttagcccac aaaaaactaa tgcaaacctg       720
     ccgaaagtat cgaaaacctc aggcaacaac aacaaggcaa cttctgaaaa tagattttct       780
     atacttggtg accttggaga agatgagggt caaccgcctc aacccaccaa agatgtaaag       840
     ccacccccta tctacattag ggaacacaat tgctcggagc ttattaacaa tcttaaacaa       900
     aaaatcgggc caaataactt ttacgttacc aacctaaaaa gaggtaatat atcagaaacc       960
     aaactccaaa taaaaaatga aagcaactac cgcactgtga cgaatttcct cgaccatgtg      1020
     ccggtaaatt actacaccta ccagctcaaa agtagcaaag ggctacaagt tgtagtaaaa      1080
     ggaatagaat caaccgtccc agtagctgac atagccgagg gactaaaaga gcaaggtttt      1140
     gacgttaaac atgtaaccaa tataatcaac agggcaaaaa tccctcagcc gctatttaag      1200
     attgaactgg cgccagagac tgcacctctt aagaaaaatg cagtccaccc tatttacaag      1260
     ttacaatatc ttctccaccg aagaattacc gtagaggagc cacacaagcg aaacggcccg      1320
     gtacagtgta ctaactgtca ggagtttggg cacacaagga gctactgcac cttgcgatca      1380
     gtctgcgtcg cctgtggtga tctgcactgc atagatgcat gtctgagaaa caaagaagat      1440
     cctgcaacga ggaaatgtag taactgtggt ggaaaccaca cagccaacta taggggctgc      1500
     cctatctata aagaactcaa gacacgtctg actcagaggc gcagcaaacc aactaccgtt      1560
     caacatgttg ctcaaccaaa ctacttcgcg ccatcagtaa caacacccgg agtctccttt      1620
     gccagagctc ttcgatactc tggagcatcg ccagtgccag taagtcttwc tcagcctgaa      1680
     gttgtgcatt ctctccagcc cataccaaat cgaaaagatg actcgctgcc agagcaaaat      1740
     acccagcgaa caactcaacc cactactcag caaaaccagc ttcccccccc accagcacat      1800
     agcggacttg aacacacact agctacgctt acaaaaatta tgctatcgat acaaagtacc      1860
     ctgcaagacc taacgcgaaa ccaaaatctt cttttggagc ttttgattaa acaatctaaa      1920
     tgaatccctt aaaaatatgc ttctggaacg ccaacggcgt ttcccaacac aaatacgaac      1980
     tccttcagtt cctaaacaac catgatatcg atatcatgct tctctcggaa actcatctaa      2040
     ccaataaaaa ctatttttat ctcaccggct atgtatttca cgcgaccaac cacccagatg      2100
     gcaaggcgca tggaggcacc ggcattctcg tcaaacagcg cataaagcat catcctcagg      2160
     acacattcgc tactaactac ctgcaggcca catccatacg tatcaatata accagcggtc      2220
     cactcacact atcagctgtg tattgtcccc cacgattcaa tattccagag aatgaatttt      2280
     tgggcttcta caactcacta ggtaactgct ttgtagctgc cggtgactat aatgcaaaac      2340
     accactactg gggctctcgt cttattaacc ccaaaggacg acaactatac aatgctatta      2400
     tcaaacctag taataagcta gattttgttt caccgggtag gcccacatac tggccagcag      2460
     atccgaataa acaaccagac attatcgatt ttgccgtaac taggagagtg ccgcccaggc      2520
     tgatacgcgt tgaaacactg gcggaactgt catctgatca ttcgcctgtt cttctctgtc      2580
     tatttgaaca cccacagctt gtaaagcgac cacaatttct gacttccaat acaacaaact      2640
     ggctaaagta taaaaaatat atcagctctc acattgaaat cgaacccaat atctcgtgtg      2700
     aagctgacat tgaaaactca cttaagcaca tagcagatgt aatgtcctca gctgccaaac      2760
     actctacacc tgacccttta gctacatccc tcccaaatac tatgcgtaca aacatgcaga      2820
     tccaatcgct ccttcaagaa aagcgtagac ttcgccgaaa ctggcagaca caccgatccc      2880
     cagccactaa acaaagcttt aaagaagcct gtcggaagct atctaaagct ttaataactg      2940
     agaagaatca ggctcaacgt gcgtatatag camagctctc acccactagc aacaaatttc      3000
     cactctggag agcgcaccca aacattcaac cacctataga gcccgatttt ccaattcgat      3060
     caccawcagg tgtatgggcg cgtagtgacg aggaaaaggc caacatcttc gcctctcact      3120
     tacaaaacgt cttccaacct catccgccgg cgaatcaatt tactctgcca aacatcccac      3180
     cagcagagcc ttcctccaca atcattcttg aaacaagtac agtcacaaaa gccattgcag      3240
     aacagatgaa tccaaaaaaa gcccccggcc atgatttaat ttcgcctaaa atgataattg      3300
     aactgccwgc atgtgcagtt aaatkcatca ccaccatatt caactcaatt ctcaaatggg      3360
     gctattttcc tctgcaatgg aaaaagtccg ttatcacaat gataccgaaa ccaggcaagg      3420
     acaaatccca accttcgtca tacaggccca ttagcctcct tccgtgctta tcaaagctat      3480
     ttgaaaagct gctttcatgc cacctaagaa cacacctcca aaacaacaga gcgattcccc      3540
     tgcatcagtt cggctttagg gaaaagcacg gaactatcga acaggtaaat cgcataacag      3600
     ctgaaatacg cacagctttt gaatacaggg aatactgcag tgccatattc ctggacgtgt      3660
     ctcaagcctt cgatcgcgtt tggattgaag gtctagttta caaaatcaag accgtcttgc      3720
     cacaaaacac ccataagttg cttgaatctt acctcaaaga tagagttttt actgtaagat      3780
     gcaaaaattt cttctctgaa aaccacaaaa tcaaggctgg agtaccccaa ggaagtgtgc      3840
     tcggaccgat cttgtatgtc ctgtacacgg ctgatattcc cacaagcagt caaacaattc      3900
     tatccacctt tgctgatgac acagctataa tcagtcgctc aaaatatcca aaaacagcaa      3960
     cagctcactt aaaaaaccat ctgacggacg tggaaaaatg gtttgcagat tggcgcatac      4020
     aagtcaacga tcaaaagtgt aagcacatta cgtttacact taatcgggaa acctgcccac      4080
     cactgtccct aaacaacaaa caaatccccc aagtcaacga agtcacctac ctgggcatcc      4140
     acttagacag gcggcttacc tggagaaggc acattgaagc gaagaagacc tccctaaaac      4200
     tcaaggccaa cagtttccac tggctcatca accctcgctc acctcttccg ctggaataca      4260
     aagttctact atataactca tgtctaaagc caacctggac gtacgggtct gaactctggg      4320
     ggaacgcaag cagcagcaac atagaaatca tccaacgwgt gcagtcgaag atactgcgaa      4380
     caataacggg ggccccctgg tatattcgca acgcaaacat ccatagggac ctggatataa      4440
     aacccgtcaa agaagaaatt gatagtaaag ttttgaaata cgaaaataga ttatcaatac      4500
     atccaaacca actagccagg cagctcaggc ggctcaggag ccactctcgt ctacagcgca      4560
     acgaccgccc actcctgccc aattgagggc tgtcgaccaa ttaataatca tcataatata      4620
     acaaataaat aataataaat taataataca tagtataggt taagatctga attcttattg      4680
     taagtctctt caagagaaga ttcaataaat aaagataaag ctaaaaaaaa aaaaaaaaaa      4740
     aaaaaaaaa                                                              4749
//
ID   Jockey-4_DK repbase;    DNA;    INV; 4121 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4121
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1341-1341 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           64..1191
FT                 /product="Jockey-4_DK_1p"
FT                 /translation="MXQDMSDADSDIDCSSSPDEFRLSXRSSKPPAICVPN
FT                 VSDPLTFERALNLAIGSANYYIRTSKFGVTRIYTANSDAFRKTVTELTTRN
FT                 CQFWHHQLREDKPYRVVVKGIHANVPSPQIEKAFSDLGFEVLNIYCPKKPD
FT                 WKSIKVNEDDNEATINFKTRQNLFFVNLKQVPNVSKSLKITKLGCYRVTVE
FT                 RAARRKELLQCQRCQLFGHSKDYCVQDPICGKCSGPHMTGSALCTSNVSLC
FT                 INCGGDHVSFDKSCPVRLEKMKILKPRPRLPLTSSPVSRKQAHSSPREFIS
FT                 AEALRTNISYADIARSNTIHSRARDAVGISTSDQCLNNKFLALDDSIRAIN
FT                 NRMDQLFKLVQETVEANKAFRELVQVLISRIPK"
FT   CDS           1191..3923
FT                 /product="Jockey-4_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTSSSLKIGLWNARGLMRGSEELRIFLGIHDIDIMLV
FT                 TETLMRXERRIFLPGYLTYFAIHPSGNSRGGSAIIIKSSLSHSPLPPTXSN
FT                 DRQIASVLLHTSDGTVTVAAIYLPPAESWTQSSFVSMFATLGNKFIAGGDF
FT                 NAKHAWWGNSRACTRGKRLQEVIANGHYQVLATGEPTFYSYNSLLIPSALD
FT                 FFVTNGFASGRLHVRTLHELSSDHVPILAELYSTPLWKPHRPRLLAHNANI
FT                 NIFKSHLEQLSDVNLEILEEVDIDNAISLFMTKLSEAAQLAAPRNRHGVVG
FT                 PRPPQLPPRILALLRLKRRVRSEYARTGDPRIQQIHRRLANRLHKVLARRK
FT                 QTQIDNFLEDLGPDMSANYSLWRVTKRFKTQSSPKSAIRNQAGGWCRTSLE
FT                 KAEVFADNLEQRFKPFDYAPDSLCLQVEEYLESPFQMCLPASAVSLEEVKV
FT                 LVAKLSPKKTPGEDLLDNRTIRLLPDEALQFLVSVFNGVLEVGYFPKVWKS
FT                 ASIIMVLKPGKPPSEVDSYRPISLLPSLGKIMERLVLNRLLSCEEVSSAIP
FT                 KFQFGFRLQHGTPEQLHRVVNFALEALEKKEYAVAAFLDIQQAFDRVWHPG
FT                 LLYKAKRLFPPQLYMVVKSFLHDRTFHVSADGYKSRVKTIEAGVPQGSVLG
FT                 PTLYSVFASDMPSHSPVTEVAEEDLLIATYADDTAVLAKSKSILAASFGLQ
FT                 EYLDAYQEWAMNWNVRINADKCANVTFTNRAASCPGVSLNGRVIGHHRAYK
FT                 YLGVTLDRKLTFGRHVANIQHAFKAKVSRMAWLLAPRNKLSLYSKVMIYKS
FT                 ILAPSLFYGLQVYGIAARCHLNKIRILQAKTLRRISGAPWYMRTRDIERDL
FT                 KVPKLGDKLHTISTKYMEKLNNHPNSLARRLATSEHRTRVRRRLKRHHPQD
FT                 LPDRVLT"
XX
SQ   Sequence 4121 BP; 1167 A; 920 C; 868 G; 1155 T; 11 other;
     acctctgctg ctgcttcatt gggcgacaat cgttttgcgt tattttctgc tgaaacagag        60
     attatgkatc aagacatgtc ggatgctgat tctgacatag actgttcatc ttccccggat       120
     gaatttmgac tatctkcaag atccagtaag cccccagcta tttgtgtgcc gaatgttagt       180
     gatccgctaa cctttgaacg ggcccttaat ctkgctattg gttccgccaa ctattacatt       240
     cgcacctcta agtttggtgt caccagaatt tacacggcca attctgacgc tttccgtaaa       300
     actgtaacgg aacttacaac ccgaaactgt caattttggc atcaccaact tagagaggac       360
     aagccctaca gagtggttgt taagggaatc catgctaatg ttcctagtcc tcagattgag       420
     aaagctttta gtgatcttgg ctttgaagtc cttaacatat attgtccgaa aaagccagac       480
     tggaagagta ttaaagttaa cgaggatgat aatgaagcta ctattaattt caagacaagg       540
     caaaatctgt tttttgtcaa cctcaagcaa gttccgaacg tttcaaagtc tctaaaaatt       600
     acaaagctgg gttgttacag agttacagtt gagcgtgctg ctcgtagaaa agagttgcta       660
     cagtgccaaa gatgtcaatt atttggacac tctaaggact attgcgtcca ggaccctatt       720
     tgtggtaaat gtagtggtcc tcatatgact ggatctgctt tatgcactag taacgtaagc       780
     ttatgtatta actgcggtgg cgaccatgtt tcgtttgaca aaagctgccc tgtcagactg       840
     gaaaaaatga agatccttaa accaagaccc aggcttccgt tgactagttc tcctgtctca       900
     agaaaacagg ctcatagttc tccacgagaa tttatttcag ctgaggcgtt aagaactaat       960
     atttcttatg cagatattgc tcgttctaac actattcata gcagggcacg tgatgctgtt      1020
     ggtatatcwa catcggatca atgccttaat aacaaattct tggcgctaga cgactccatt      1080
     cgtgccatta ataacagaat ggaccaactt ttcaagcttg tacaagaaac cgtagaagcc      1140
     aacaaagcat ttagagaact tgttcaggtt cttatttcac gtattccgaa atgacctcat      1200
     caagcttaaa aatcggattg tggaatgctc gtggattaat gagaggctct gaggagcttc      1260
     gaatattcct cggtattcat gatatagaca taatgctagt cactgaaaca cttatgcgtg      1320
     wggaaaggcg cattttcctt cctggatatc tcacatattt tgccattcac cccagtggca      1380
     acagcagagg tggctctgca atcatcatta aatctagttt aagtcatagt cctctscctc      1440
     ctacckctag caatgataga cagatagcga gtgtgcttct gcacacttct gatggaacag      1500
     tcactgtagc tgctatatat cttccaccag cagaaagttg gacgcaatct agctttgtat      1560
     ccatgttcgc caccttgggt aataaattta ttgctggtgg cgattttaat gccaagcatg      1620
     catggtgggg caactcaaga gcctgtacta gaggtaaacg cttgcaagaa gtcatcgcaa      1680
     atgggcatta ccaggttctg gctacgggcg aacctacgtt ctactcctac aattccctat      1740
     taattccatc agcgcttgac tttttcgtta ccaatggatt tgcttcaggc agacttcacg      1800
     tacgtactct acatgaactc tcgtcggatc atgtacctat cttggctgaa ctgtactcca      1860
     cgccgttgtg gaaacctcat cgcccacgac tacttgccca taatgctaac atcaacattt      1920
     ttaaatccca tcttgaacag ctaagcgatg taaatttaga aattctggag gaggtggata      1980
     ttgataatgc aatcagtctt tttatgacga aattatctga ggctgctcag cttgctgccc      2040
     ccagaaatcg acatggagta gtgggcccta gacctcccca actccctccc agaattttag      2100
     cgctgcttag acttaaacga agagttcgta gtgaatatgc tagaacagga gatcctcgta      2160
     tacaacagat ccacagaaga cttgccaatc gcttgcataa ggttcttgct cgtagaaaac      2220
     agactcaaat agacaacttt ttggaagacc tgggtcctga tatgagtgca aattactcgc      2280
     tttggcgtgt cacgaaacgg ttcaaaactc agtcctcccc aaagtcagca atcagaaatc      2340
     aggctggggg ctggtgtcgc actagcttag aaaaagctga agtgtttgct gataaccttg      2400
     agcagcgttt taagcccttt gattatgccc ctgatagttt gtgtcttcaa gtggaagagt      2460
     atttggagtc gccgtttcaa atgtgccttc ctgctagcgc tgtctctttg gaagaagtga      2520
     aagttctggt agccaagttg tctcccaaaa aaacccccgg tgaggatctt cttgacaata      2580
     gaaccattcg tttattacct gatgaagccc tgcaattcct tgtgtctgtt ttcaacggcg      2640
     ttttagaagt tggatacttt ccgaaagttt ggaaatcggc cagcataatc atggttctca      2700
     agcctggaaa accgccgtca gaagtggatt catacaggcc tatcagcctt ctcccatctc      2760
     tgggtaaaat tatggagagg ctggttctaa acaggctgct ctcttgcgag gaagtttcca      2820
     gtgcgatccc aaaatttcaa tttggtttcc gcctgcagca cggtactcct gagcaactgc      2880
     atagagtggt taactttgcc ttagaagcct tggagaagaa ggagtatgct gtagctgcct      2940
     tcctggacat tcaacaggca tttgacagag tctggcaccc tgggctgctg tacaaagcga      3000
     agcgactctt cccgcctcaa ctgtacatgg ttgtgaaaag ttttctgcat gatcgcacat      3060
     tccatgtatc ggctgatggg tataaatcaa gagtcaagac aattgaagct ggagttccgc      3120
     aaggaagtgt tctaggtcct actctgtatt cggtctttgc ttcggacatg cctagtcact      3180
     cgccagtmac tgaagtcgcg gaagaagatt tactaatagc tacgtacgct gatgacactg      3240
     ctgtgctagc gaaaagtaaa agtattttgg ctgcttcctt tggtttacag gagtatctgg      3300
     atgcctacca ggaatgggct atgaactgga atgtgcgcat caatgcggac aaatgtgcga      3360
     atgtgacttt caccaaccgt gcagctagct gtcctggggt cagtcttaat ggtagagtca      3420
     ttggccacca tagagcctat aaataccttg gcgttacctt ggaccgtaaa cttacattcg      3480
     gcaggcatgt tgcgaacatt cagcatgctt ttaaggctaa ggtttcccgg atggcatggc      3540
     tcctggcacc ccgcaacaaa ctatcgcttt actccaaggt catgatatat aagtcaatwc      3600
     tagccccctc cctgttttat ggccttcaag tttatggaat tgctgcaaga tgtcatttga      3660
     acaagattcg gattcttcaa gcaaaaacgt taaggaggat ctctggggct ccttggtaca      3720
     tgaggactag agacattgaa cgagacctga aggtgcccaa gcttggagac aaacttcaca      3780
     ctatttcaac taagtacatg gaaaaactaa acaatcaccc taatagtctg gctagaagat      3840
     tagccacctc tgaacacaga acacgagtca ggagaagact taaacgtcac caccctcaag      3900
     acctccccga cagggtcttg acataacata tcagacaaaa catgaaaatc atttcaaatt      3960
     atgtaaacat aacttaactt aatactcctc cataacwaag cattgtaaac atagaattaa      4020
     cttccaatta ggtttagttg ccaaatatct aggtaacagt gcactagtca aataaaattt      4080
     cattattttt tttcccacaa aaaaaaaata aaaaaaaaaa a                          4121
//
ID   Jockey-4_DMel repbase;    DNA;    INV; 1827 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit fly: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1827
RA   Bao W.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Direct Submission to Repbase Update (20-AUG-2018).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. It repressent the 5'-port. The
CC   3'-end probably is identical to BS2.
XX
SQ   Sequence 1827 BP; 543 A; 458 C; 462 G; 363 T; 1 other;
     agaagagctg ggcacactgg aacagcgcga aaggtgaaaa tttctcttcg tcgtgataaa        60
     ccaaagacaa gtccaaaata gtggcaaaaa tgtttaatag tgaccctcaa gtcgctatca       120
     gtggtattgt agtggaactt aaccactttc atttaaaaaa aaagactgag tttgtttgca       180
     cgaagtgggg ctccgctgcc aagtggccac gctttcgctt gtgcaaaaat aaaaatcagc       240
     tgttgagctt aaagctccaa ctatcccaag gttctagtca ggaccctggt gatttgatgc       300
     atacttccag gcgttctcta aaatcgaatg ctagagacgc tagagaagct agtatgataa       360
     caataaaaaa taaagagatt cttggcgagg cgcttagaat caacctgtgg cgatgaacgg       420
     cgcagccgag actaccgcga ctgcgactmc gtctactggc ccattttcga gcgccaatgg       480
     atccagagct gggcttcaca cccgcaacct aagctctgct tcaggtgacg cagtagtgca       540
     gcgcttccag actgtaaagc gcaagataat accaggcgct tctccaaatc ttgagaggaa       600
     gaaactaaac cctggcaaga aggatgatat ctcccaagct agctacaatg gccgatctaa       660
     tcgttttggg ctcctcgcgg acacgccagc taacatggaa tctgtacttg gaagtgacga       720
     gcagcccagc actagccgcc aagctgctat agctgcgcag gaaagggcgg ctactggcaa       780
     agcgcaacca aagccaccac caattgtgct tgaaggcgtc aacgcgcaac ttgctgatgt       840
     tgggaataaa aagagtggct gatattagca aggtcgaagc tagagcatcg ctgggtggtg       900
     tcatgcgact ttacgctgct gatgcaagca cgtttcgaag tatcgtcagc tggcttgagg       960
     acgagcaata cgagtttcat tgctaccagc tgaaggagga cagaccgtat agagtctgcg      1020
     taaaaggtct gcaccacagc acgctgtcca gccagatcaa ggaggagatt gaaaaagctg      1080
     gtcacaaggt acttgatgta catacgcccc taaagcgcag cgagcctggc actcccacat      1140
     caaagccagt caatatattc tttattaata ttgccgctgc ggccaataac aaggcgattc      1200
     tggcagtgag gactctatgc ctacgagagt ggtaatagag ccacttcgca agcgcactgc      1260
     tgtcgtgcaa tgtcaccgat gccagcagtt tggtcacacg gccaaatact gccgcaaagc      1320
     tcacatatgt gtgaagtgcg gtggagagca tcctgccaag gagtgcactc gaccacgtaa      1380
     tgaggaatgt acttgctaac tgtggtaaac agcacccagc caactattcg ggctgcacta      1440
     agtaccagga gtatctgcaa cgctcgatgc cgaagagtgg acttggaagc aaaaccgaag      1500
     gtacgggtag aagtttgcca cgctacacca ccggaagcag ggcaactgct acccttcaag      1560
     gcggagcttc ctatgcagac atagcaaagc agcaccagca gcagatccaa cagcaccact      1620
     gcaacgacag aagccgcagc agacaaagga caacgagaga tccactccag cagccgacgg      1680
     acaccagcaa caacatcgaa gccatcctca agtcactgag tgatagcatt aactccctcc      1740
     gggcgctcca agaaaagcag atggagctca tgatgatgat gcttaagcag cagcaacaac      1800
     agacacagca gcaggggcag attctta                                          1827
//
ID   Jockey-4_DMo repbase;    DNA;    INV; 6322 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   29-SEP-2020 (Rel. 25.10, Last updated, Version 2)
XX
DE   non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DMo.
XX
NM   Jockey-4_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6322
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
RN   [2]
RP   1-6322
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-SEP-2020).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence extended and updated. 5'-end is truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1879
FT                 /product="Jockey-4_DMo_1p"
FT                 /translation="NEIGRDGDHYCVFCLDIQTENDGEEDMDVEVELLIDS
FT                 QPLAPAPTPSKVLVKKNVVMAQPSTSRAAAQLLKSKASTSAQSLVADYFKA
FT                 KDAIKSGAKPLANERAAKRTAEKGDSPKKKTAQLDAVDLDGSDEDCLQLDD
FT                 SARTPRTEDTQQEATGLVNKARTAANVQAMPPNAAAAAVTAASAAAATGAS
FT                 HAQLNAKPAPLFLANVTDIMPLLIRLDDAIGQENYTTKPAANHGIRVQCKD
FT                 IATHRKLVKYLDVNSIENHTYQLKCERGYRAVIRHLHFSTPDHYIREQLAK
FT                 LGHEVRFLRGIKSRFSKEPLDLFEVELAVSANNAELLQITAIGNQRVKIER
FT                 PYKSSEIAQCHRCQKFGHTKNYCRRPFACVKCGANHASTDCGKQKGDQTPA
FT                 KCANCSGPHAASYKGCPSYKEACKKRENESATQLAKVISNLAKPAATTAAQ
FT                 SSRANMPNMSNMPNLLQQAPPQSRPQTVSAGPSYSAALRAGLQFAQPVGPA
FT                 AISSKQRQSRQKATKRSQQQQLLQQQQQQQQQQQVRLPRQASAQRPPQPKR
FT                 SRSLSTRRRHPQPIDGGAHPVSGGVHFQRFEQPINASVPSMPVQVSFRLEA
FT                 KIDKLIEMMTTLTACLLAQFGPNERLNV"
FT   CDS           1875..4934
FT                 /product="Jockey-4_DMo_2p"
FT                 /translation="MSSNVSTSPNASRRSAALQPAVSQRVNNMNISFWNAA
FT                 GVKKKLNELNLYLVKHDIDIMLVSETHLTDSDSIAINGYIVYLANHPSNRR
FT                 RGGAAFIIKQHICHYAMRFTSNDSHQSVEVSVSLQNGRHINIVSIYCPPQV
FT                 IWSGQDFNNLLSSLGDTFIVGGDWNAKSQWWGNARSCLRGRTLVNSILQVN
FT                 CNILATGSPTHFPFNSRQTPSAIDFALFKGIRRDLLAITDSFELSSDHLPL
FT                 QVQLVEKPVTSRAKGHLLDLNANIDKFQSYLNEKILLNTEINSADDVDDAV
FT                 NIFVKNIEDAANYANAQHPRKIMRTRCRVNRQTLQLIEAHKQVKRYLTRSR
FT                 NPMLKMLCNRLSNRIRKELIYARQKYEEELFRSIDPTDRYSMQKLWRLTNE
FT                 IKRQPAPNLPLLKSSSDNGSNAQNVWCKTTAEKAETFAASLEQRFQPIVTT
FT                 PPSDLAEIEAQVSQPSLTASVSFRPVTAAEVISHISTLENKKAAGLDQIDN
FT                 HTIKALPLKAVLYLVMICNNSLRLSHFPSSWKLAVVKMVHKPGKPTHHVAS
FT                 YRPISLLSGLSKILEYLILSRMLEQDTLVNAIPNHQFGFRKAHSAEQQLGR
FT                 VTQYIIKAFDDHKYCSAVYMDIKEAFDRVWHTGLKYKLKRLLPDALYRILC
FT                 CYLADRTFIVECHGGCRSGIKQIHAGVPQGSLLGPILYNIYTSDIPRPTCL
FT                 RGILIATYADDVIVLSADFRQADALNQQQAYMDRLAEWASKWCITINANKT
FT                 MHIMHTLRVIAPYQAIRIGNETIENGTSHSYLGVTLDTKLRFSQHVTTVVT
FT                 RVRARLKKIDWLINKDSKLTLRTKVIIYKQLVAPLWQYSLPVWGALLSEAQ
FT                 FSRIRVVHNKALRAISGAQYYVSNARIRADLEVLSADEIFNNLCAKYYDRL
FT                 RVHTNNLAKNIAYDPFIPQRITLARYTSLVNTHLANGIALRTQRQLQREAD
FT                 EVAESRERFLRRREAQQHNEAAQAAAHQPQRLPVFEGIAPMPRPLPPPSPL
FT                 AAYRVLFRSHRDQS"
XX
SQ   Sequence 6322 BP; 1849 A; 1479 C; 1315 G; 1679 T; 0 other;
     gaatgagata ggaagggatg gggatcatta ttgtgtgttc tgcctagaca tacaaacaga        60
     aaatgacggt gaagaggata tggacgtgga agtcgaatta ttaatcgact cgcagccatt       120
     agcgcctgcg cccacgccat cgaaagtgct ggtgaagaaa aatgtggtta tggcacaacc       180
     atcaacttct cgagctgcgg ctcagttact aaaatcgaaa gcttcaactt cagcgcaatc       240
     tttggtcgct gactatttta aagcgaaaga cgcgattaaa agtggcgcga agccacttgc       300
     aaatgaaaga gcagcaaaga ggactgcaga aaaaggcgac agcccaaaga agaagactgc       360
     gcagctggac gcagttgatc tggatggcag cgatgaggac tgcctgcaac ttgacgactc       420
     tgcgcggact cccaggactg aggacacaca gcaagaggca actggcctcg ttaataaagc       480
     tcgcactgct gcaaatgtgc aagctatgcc gcccaatgct gccgctgcag ctgttactgc       540
     tgcttccgct gccgccgcaa ctggagcaag ccatgcgcaa ctcaacgcga agcccgctcc       600
     gctgttttta gcaaatgtca cggacataat gccgctttta atccgcctgg atgatgctat       660
     cggccaggag aactacacca ccaagcccgc tgcaaaccat ggcatcagag tgcagtgcaa       720
     ggacatcgct acgcaccgca aattggtaaa gtacctcgac gttaattcga ttgaaaatca       780
     cacataccag ttgaaatgcg aacgcggcta tagagccgtt atccggcatt tgcacttctc       840
     cactccggat cactatattc gtgagcagtt ggccaaatta gggcacgaag ttcgcttctt       900
     aagaggcatt aaatcacgct tctctaaaga gccgcttgac ctctttgagg ttgagttggc       960
     cgtcagcgca aacaacgcag aattgctgca aataactgcc attggcaatc agcgtgtaaa      1020
     aattgagcgg ccgtacaaat caagcgaaat tgcccaatgc cataggtgcc agaaatttgg      1080
     gcacacaaaa aattattgcc gtcgcccctt cgcctgcgtc aagtgcggcg ccaatcatgc      1140
     ttccacggac tgtggcaagc aaaaaggcga ccaaactcca gcgaagtgtg ccaattgctc      1200
     cggcccacat gccgcgagct acaaaggctg cccttcttat aaagaagcgt gcaagaagcg      1260
     cgaaaatgaa agtgccacgc aactagctaa agtcattagc aacttagcca agccagctgc      1320
     cactactgct gctcagagca gtcgagcaaa tatgccaaac atgtctaata tgccaaatct      1380
     tttacagcaa gccccccctc agtcacgacc gcaaactgtt agtgcagggc ccagttattc      1440
     ggctgctctt cgggctggcc ttcaatttgc tcagcctgtc ggaccggcag ctattagcag      1500
     caaacagcgt cagtcgaggc aaaaagccac caaacgtagc caacaacaac aacttctgca      1560
     acagcaacaa caacaacagc agcagcaaca agtccgcttg ccaagacagg caagcgcaca      1620
     gcggccgccg cagccaaaac gtagccgtag tctgagtacg cgccgtagac atccgcaacc      1680
     aatagatggg ggtgcgcatc cagttagtgg gggtgttcat tttcaacgtt tcgagcagcc      1740
     aataaatgcg agtgtgccaa gtatgccagt gcaagttagc tttagattag aggctaaaat      1800
     agacaaactc attgagatga tgaccaccct cacggcctgc ctgttggccc aatttggtcc      1860
     caatgagcgc ttaaatgtct agcaatgtat ccacttctcc aaatgccagt agacgcagcg      1920
     ctgcactgca gcctgctgta tctcaacgtg tcaacaacat gaacatatct ttttggaatg      1980
     ctgcaggtgt caagaaaaag cttaatgagc tcaatctgta tctcgtcaag cacgatatag      2040
     atataatgct agtgtctgag acgcatctta ctgatagcga tagcatcgct attaatggtt      2100
     atattgttta cttagcaaat cacccctcaa acaggcgcag aggaggtgca gcctttataa      2160
     ttaaacaaca tatatgccat tatgctatgc gctttacatc taacgactcg catcaatctg      2220
     tcgaagtttc agtcagcctg caaaatggcc gtcacattaa tattgtctca atctactgcc      2280
     cgccgcaagt tatctggtct gggcaagatt tcaacaacct gctatcttct ctgggtgaca      2340
     cttttatagt cggtggtgac tggaatgcga aaagtcagtg gtggggcaac gccagatctt      2400
     gtctccgtgg ccgaacgcta gtcaatagta ttctacaagt gaattgcaac attctggcaa      2460
     ctgggtcgcc cacccatttt ccgttcaatt cacgccaaac tccgtctgcc attgactttg      2520
     cgctatttaa aggtatcagg cgagatttgc ttgccatcac tgactctttc gagcttagct      2580
     ctgatcatct cccgttgcaa gtccagctgg ttgagaagcc tgtcaccagc agagcaaaag      2640
     gccatctact tgatctgaac gctaacatag acaaatttca gagctatcta aatgaaaaaa      2700
     tcttgctcaa cactgagatc aacagtgctg atgatgttga tgatgcggtc aatatttttg      2760
     tcaaaaatat tgaagatgct gcaaactatg cgaatgcaca gcacccacgc aagattatga      2820
     ggactagatg tcgcgtaaat agacagactc tgcaactcat cgaggcccat aagcaagtca      2880
     agcgctatct gactcgaagt cgcaatccga tgcttaagat gctctgcaac aggctatcga      2940
     atcgcatacg caaagagctc atatatgcta ggcagaagta tgaggaagag ctattcagat      3000
     ctatcgatcc aaccgataga tatagtatgc aaaaactctg gcgcctgacc aacgaaatca      3060
     agcgacagcc tgctccaaat ctaccgctgt tgaagtcctc tagtgacaat ggctccaatg      3120
     cgcaaaacgt ctggtgcaag actactgccg agaaggccga aacatttgct gcgagtcttg      3180
     aacagcgttt tcagccaatc gtgactacgc cgcccagtga tctggctgaa attgaggctc      3240
     aagttagcca gccatctttg actgcttcag tctcatttcg gccagtcact gcggctgaag      3300
     tcatcagtca catcagcacg ctagagaaca aaaaagcggc tggtttggac caaatcgata      3360
     atcacaccat caaagcgctg ccattgaagg ctgttttgta tcttgttatg atatgcaata      3420
     actctcttag attgagtcat ttcccctcga gctggaagtt agcagtggtg aagatggtgc      3480
     ataagcctgg caagcccaca caccatgttg catcatacag gccaataagt ctgctgtctg      3540
     gcctctcaaa gatactcgag tacttgatac tgagccgtat gctggagcaa gatactcttg      3600
     taaatgcgat tccaaatcat caatttggat tccgcaaggc gcattcagct gagcagcaat      3660
     tgggtcgagt cacccagtac attattaaag cgtttgatga ccacaaatac tgctctgctg      3720
     tctatatgga tatcaaggaa gcctttgatc gagtgtggca tacaggcttg aagtataagc      3780
     ttaagaggct actgccagat gctctctatc gcatcctctg ctgctatcta gcagatcgca      3840
     ctttcattgt tgagtgtcac ggtggctgtc gctcaggtat caaacagatt cacgctggtg      3900
     tgccacaagg tagcttgctc gggccaatct tgtacaatat atacaccagc gatataccaa      3960
     ggccaacctg tctgcgtggg attcttattg ctacttatgc tgatgacgtc attgttcttt      4020
     cggcagactt tcgtcaagca gatgcgctta atcagcagca agcttacatg gatagattgg      4080
     ctgaatgggc gagcaagtgg tgcattacaa ttaatgcaaa caagactatg catatcatgc      4140
     atactcttag agttatagcg ccatatcagg cgattcgcat tggcaacgaa actattgaga      4200
     atggcacctc acattcgtat ttgggcgtta ctctagacac aaaactacgc ttttcacaac      4260
     atgtcactac ggtcgttact agggttaggg ctaggcttaa aaagatagat tggctcatca      4320
     ataaagacag taaattgact ctaaggacta aagtcatcat atacaagcag ctagttgctc      4380
     cactttggca atactcgctg cctgtatggg gcgctctgct atccgaggcg caattcagcc      4440
     gcattcgagt cgtacacaac aaagcactga gagccatttc tggtgctcag tactatgttt      4500
     cgaacgcgcg catcagagct gatttggaag ttttatctgc ggatgaaata ttcaacaatc      4560
     tctgcgccaa atactatgat cgactccggg tccataccaa caacttggcc aaaaacattg      4620
     cctacgaccc gttcatccca cagcggataa cattggcaag atacacgagt ctcgtaaaca      4680
     cgcatttggc caatggcatt gctctacgca cccagagaca actacaaaga gaagccgacg      4740
     aagtagctga aagcagagaa cgattccttc gccgacggga ggctcagcaa cacaacgaag      4800
     ctgcacaagc agcagcccac cagccgcaac gtctacctgt cttcgagggt attgcgccaa      4860
     tgccgcggcc actaccacca ccatcaccac ttgctgccta tagggtccta tttagatcac      4920
     atagggatca gagttaagta tttacactac ttgaacacaa attaaactct cggctacaat      4980
     acaaaagttt attttcggca catatatgta tatgtgcagc gaacatatct gacggcgctt      5040
     gagcctaaaa ttcaaattta aatctactta aatctaactt aattatgcgc cctattggct      5100
     atgcagccca tatgactaag tctccttgct gtacttcatg tattctgcaa agaaaaaatc      5160
     aacattaata atctttgaat gtttttatta acttctgcaa aattcactta cctgctagtc      5220
     aacttgcaat taatgaagtt cggctatttc cagctttgcg cccccctgca ctttgtatgg      5280
     tagcagctgt ttatatataa agataataat taattaatat taattgttaa ctttattaat      5340
     atcacttttt caattgttaa ttttttatat tgcaaaactc acctgctatt cagcttgcaa      5400
     ttaatgcaat cctgctatat tcagtgttgc gcctgtctgt attccgtatg acagcagcca      5460
     catacatata aaaagataat aattaattaa tattaattat taataccata aatttcaatt      5520
     atttacttgt taatatttaa acttaccaat tagcagcata aaatttgcat ttaatgcaat      5580
     tttcaatcag ctgtttttgt tttgttttga ttatgcaccc cgataggcac aacgccaggg      5640
     gtgcatcgtc acttactcaa ttgcacttgc gatatatcga atgaatgtta atgaaatcaa      5700
     aactgctaaa atgaattgtt aaactatttt tatttaatta tctatattaa ttatcattta      5760
     ctttttgtaa tttaagctaa ttttagctta agcccgtatt agagaaaatg accagacttt      5820
     gtctcgactt ttctctatta ttccaattgg ccacttgggg ctatttttct cggtgcatct      5880
     tgtagatgct tataaatgaa aaaattgaat tatattaatt aatgccatct attactattg      5940
     ttaaacttat atcttactca tctaattagt ctattgtaag ctacttaagc actttattgt      6000
     tattttgaat tatctttaaa ttgctctatt ataagtattt tgtaaaatta agctgcactg      6060
     ttatttttgt gcacttatgg ccatttaaat ttaatcattt aatgaaaagt ttcgacaaat      6120
     atagtccttt ttagctttta attatctcat aggcgctatt tatattcata agaaatgcta      6180
     ttgtgaagta ttaaataaat aaagagtatc cccgtactct tccgctcatc atgcagctgc      6240
     aggtcagctg ttcatgtacg agaatgggaa gaggcggaga tcactaatgt gtgttcttta      6300
     tagacatacg aacaggaaaa aa                                               6322
//
ID   Jockey-4_DPer repbase;    DNA;    INV; 4920 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4920
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1653-1653 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           663..2000
FT                 /product="Jockey-4_DPer_1p"
FT                 /translation="MPMVSISKKQKRADKVSKTIQKTTHPAIPKNHPFKGR
FT                 QNFTPVTTPSVALLNNRYAALSEEAESVMELDEEEQHGLVANEASNEQQPS
FT                 IVPKPPAICVPQVNKMDKLEDALNSVIPADEYDIRTSRFGVSRIYAKNSQA
FT                 FRTVIDMLTKQNCEFWHHQLREDTPYRLIIRDIHPNVPKHLIEHTFTDKGF
FT                 TVMNIYCPRKPNWRNIEINEEDDHEINSLKTRQSMFYVSLKKTPNIAEALK
FT                 ITQIGRHRVTVIKAKHSKELVQCFRCQDFGHTRNYCLKKPVCGKCSGDHYT
FT                 GSKSCELSLSNKSICANCGEDHLSSYKSCSVRIELSKKLKPTARLPEDGMP
FT                 ASSKNKNXPARSQVISNANVRSGFSYADITRPRAEKNINVNTLHDSSRLFN
FT                 GAEDQHFSSKFKILEKAINDLNSRMDQMFKLIQDTMEANKAFRDLVQKLIS
FT                 K"
FT   CDS           2000..4720
FT                 /product="Jockey-4_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNKLQLKIGLWNARGLVKNIEELRLFLNANKIDVMLI
FT                 TETHMRPGLRAFVPGYDQYYADHPSGTSKSGSALFIRSSIAHAQNEPTSRI
FT                 NIQVASVSVPTNVGCIKISSIYLPPNQPWSTTDFEQLFLSLGNRFIAGGDF
FT                 NAKHPWWGNVRSCCRGKRLQEAIVSSTCEILATGEATFFSYNTRLTPSALD
FT                 FFIVNGIAQNKLSVEIKYELSSDHLPIVASVHHSPQIKTMKQQILPRGSCV
FT                 EVFQAELDSRINLNTEIKSPDDIEDAISIFMRNVILAASSAAPVNQCSPSQ
FT                 RRQDTLPPSAVALLRLKRRVRREYARTGDTRVHQIYLRLSNRLQKVLAKVK
FT                 QTSIDNILEKAGPDASFNYTLWKLTSRFKRVVMPKSPIKNPAGGWCYSSQQ
FT                 KADIFADSLEQRFKPFNLTSAVTRRAVELQLEMPFQMSLPASPVTFQEVVQ
FT                 QIKKLKAKKSPGEDLLDNRTLKLLPKKALLFIVLLLNSILRIGHFPTCWKT
FT                 ALISMVPKPEKQHTEVDGYRPISLLSALGKMTERMILNRIMQLEPVKQRIP
FT                 KWQFGFRKGHGTPEQLHRVVNFALDAMEQKMYSVAVFMDIQQAFDRVWHDG
FT                 LLFKLRNILPPQLFQLVSSFLMDRSFSVVVNGAKSSKRPICAGVPQGSVLG
FT                 PTLYTLYTADMPSSRVITGLDEDDVLIATYADDTAVLTRSPSINLATEALQ
FT                 QYVSSFEVWAQKWNIGINSSKCANVTFATRTLSCGGINMLGSTLTHKSSYK
FT                 YLGVVLDRSLNFKTHTTMVRQSVMAKAGKMAWLLAPRNKLSLYSKVTIYKS
FT                 ILSPIWKYALQVYGIAAKTNLNKIRVAQSKILRRICNAPWYMRNSDIERDL
FT                 KVPKVGDVIQLHAARYLQRLGGHPNALARRLINPPRKRRLKRCHPLDLPTR
FT                 SLL"
XX
SQ   Sequence 4920 BP; 1617 A; 1099 C; 1027 G; 1174 T; 3 other;
     agttctttcc atacattcgt cgaagacgga cgtgtcgcgc attgaagttt tcaaataatc        60
     acaaagtgca ttctgtgtgc ttatctcgca caagaatcta tttttagaca ctgcgtagcg       120
     gtgtcggtaa cacgagaaca acaaagaaca gtaagcgaag taagctgtcg tacagcgggc       180
     aagtttttgc cctcgccttg cgcgcagccg caaacgaagg gcaacaaaag tttaactttt       240
     cttagcagca agaattcttg atgctaggca atcacaaatt tgtaacaagc aaatttcgtg       300
     aagtgccaaa aaatggacgt agactcacct gatcattccc agcttagtga taagctttca       360
     gcgactgata agatgaggaa aatagctggt gcacctgcag aattgcgtgc cagcttggct       420
     aaagacctat ataaggcaat tggaacgcct aactacaata gtagcttgat cgcaacgact       480
     acaagcacta ttaccacgag cacactatct ttctcaacag ggaactgtca agcgaattac       540
     tcaatggcaa atacagtagc tggcagcata tgttctgtac cgagcacctc gagagctgag       600
     gcggctgaga gccttcaggc ttagcaaaaa aagtatccca aggaaaagat tgtaactttc       660
     agatgccaat ggtctctatt agtaaaaagc aaaaaagagc tgataaagtc tcaaaaacaa       720
     ttcaaaagac tacacaccca gctattccaa aaaatcaccc attcaagggc cgccaaaatt       780
     ttacacctgt tactacccct tcagtagcac ttctaaataa tcgctatgca gcgctatctg       840
     aagaagctga atctgtcatg gaactggacg aagaagagca acatgggcta gtagcaaacg       900
     aagctagcaa tgagcagcag ccaagcatag tgcctaagcc tccagctatt tgcgtgccgc       960
     aagtgaataa aatggacaaa ctcgaagacg ccctcaactc tgtaattcca gctgatgagt      1020
     atgacattcg cacatccaga tttggagttt cgcgtatata tgcaaaaaat tcccaagctt      1080
     ttcgaacagt tattgatatg ctgacgaagc aaaactgtga attctggcac catcagttga      1140
     gagaggatac gccgtacaga ttgattattc gagatatcca tccaaatgta ccaaaacact      1200
     taattgagca cacgttcacc gacaagggct tcacagtcat gaacatctac tgccccagga      1260
     agccaaactg gcgtaatatt gaaataaatg aagaggatga tcatgaaata aatagcttaa      1320
     aaacaagaca gagtatgttc tacgtgagcc taaagaaaac accaaatatt gcagaggcac      1380
     taaagattac tcaaattgga aggcacagag taacagtaat taaggcaaag cacagtaaag      1440
     aattggtgca gtgctttaga tgccaagatt ttggacatac gcgaaactac tgccttaaaa      1500
     agccagtctg tggaaaatgc tctggcgacc actatactgg atcaaaatcg tgcgaactaa      1560
     gtcttagtaa caaatccatt tgtgcaaact gcggcgaaga tcacctatct agctataaaa      1620
     gttgttcagt cagaattgaa ctgagcaaga agcttaagcc gacagccaga ctaccagaag      1680
     atggaatgcc tgccagtagc aaaaataaaa atcwcccagc cagatcgcaa gtcatctcaa      1740
     atgccaatgt gaggagtggg ttctcctatg cagacataac aagaccgcgt gcagagaaaa      1800
     atattaacgt aaacacatta catgacagct cccggttgtt taatggtgct gaagatcaac      1860
     attttagtag caaattcaaa atattagaaa aagctataaa cgaccttaat agtagaatgg      1920
     atcaaatgtt caaactaata caggatacga tggaggcaaa caaagccttc cgcgacctgg      1980
     tacagaagct tatttcaaaa tgaacaagct tcaattaaaa atcggattat ggaatgcacg      2040
     agggctagtc aagaacattg aagaacttag acttttcctt aatgctaata aaatcgatgt      2100
     aatgttgata acagagacac atatgcgccc tggtctgaga gcattcgtac caggatacga      2160
     ccaatattac gctgatcatc ccagtggaac atcgaaaagt ggctctgctc tgttcatacg      2220
     atcgtccatt gcccatgctc agaacgaacc tacgtccagg ataaacatac aagttgccag      2280
     cgtgagtgtg ccgactaatg ttggatgcat caagatctcc tcaatatacc tgccacccaa      2340
     ccaaccttgg agtacaactg attttgaaca actttttctt agcctgggga acagattcat      2400
     cgcaggcggt gactttaacg caaagcaccc atggtggggt aacgtcagat catgctgtcg      2460
     agggaagcga ttgcaagagg ccatcgtcag tagcacatgc gaaatccttg ccactggcga      2520
     ggcaactttc ttctcataca acactcgcct tacaccttct gctctcgact ttttcattgt      2580
     caacgggatt gcgcaaaata agctgtcagt cgaaattaaa tatgaactct cctcggatca      2640
     cctgccaatt gtagcatcag tgcatcattc tcctcaaatc aaaactatga agcaacaaat      2700
     tctccctcga ggctcttgcg ttgaagtatt tcaagccgaa ctagatagta gaatcaacct      2760
     caacacggaa ataaaaagtc ccgatgatat agaagatgca atctcgatat ttatgagaaa      2820
     cgtaatattg gctgcatctt ctgctgcgcc tgtaaaccaa tgttcaccaa gccaacgacg      2880
     acaagatact cttcccccga gtgccgttgc actcctgcgc ctgaaaagaa gagtaagaag      2940
     agagtatgcg agaacgggtg atactcgagt tcatcaaatc tacttgagac tatcaaaccg      3000
     actgcaaaag gttcttgcaa aagtcaagca gacgagcatt gataacattt tagaaaaagc      3060
     tggccccgat gcatctttca actatactct ctggaagctt acaagccgat ttaaaagagt      3120
     agtcatgcct aaatcgccaa ttaaaaatcc agcaggcggt tggtgctact ccagtcagca      3180
     aaaggctgat atcttcgcag acagtttaga gcaaagattt aagccattta atcttacgtc      3240
     tgctgttaca cgaagggccg tcgagctaca attggaaatg ccatttcaaa tgtccttgcc      3300
     agcaagccca gtcacatttc aagaggtggt gcagcaaatt aagaagctga aggccaaaaa      3360
     atcccctggt gaggacctgc tggacaacag gactttaaaa cttctgccta aaaaagccct      3420
     gctatttata gtgctgctcc tcaacagcat tcttaggata ggacactttc ctacctgctg      3480
     gaagacggcg ctaatctcca tggtacctaa gccagaaaaa caacacacag aagtcgatgg      3540
     ctacagacca attagcctgc tctcagcgct agggaagatg acggaaagaa tgatactgaa      3600
     ccgcatcatg cagcttgaac ctgtaaagca aagaattcca aagtggcagt ttggatttag      3660
     aaaaggtcac ggcacgccag aacaacttca tcgtgtggtc aacttcgcgc ttgatgcaat      3720
     ggagcaaaaa atgtattcgg tagctgtgtt tatggacatt caacaagcgt ttgacagggt      3780
     gtggcatgat ggcctcctct ttaagctgag aaacatattg cccccgcagc tattccagct      3840
     ggtgagtagc tttctaatgg acagaagttt tagtgttgtt gtaaatggag caaaatcatc      3900
     gaagcgccca atctgtgcag gcgtcccaca aggcagcgtt cttggaccaa cgttatatac      3960
     cctatataca gccgatatgc cttcctcaag ggtaataact gggttggacg aggacgatgt      4020
     gttgatagca acctacgcgg atgacactgc agtgctgacc agaagtccaa gcataaatct      4080
     agctacggaa gctctgcaac aatatgtgag cagctttgag gtctgggctc agaaatggaa      4140
     cataggcatc aacagcagca aatgtgctaa tgttactttt gctacgagaa cactttcttg      4200
     cggaggcatt aatatgctgg gctccacact tacgcacaag agctcgtaca aatacctagg      4260
     tgttgtactc gacaggtcac taaatttcaa aacccatact accatggttc gacagtcggt      4320
     gatggcgaaa gcgggaaaga tggcgtggct acttgcacca agaaataagc tgtcgctgta      4380
     cagcaaagtc acgatataca agtccatcct cagccccata tggaaatacg cacttcaagt      4440
     ttacggcatc gcggcaaaaa ccaacttaaa taaaatcaga gttgctcagt caaaaattct      4500
     acgacgaata tgcaatgctc catggtacat gcgaaacagc gacatcgaga gggacctaaa      4560
     ggttcccaaa gtgggcgatg tkatacaatt acatgcagca aggtacttgc aacgacttgg      4620
     tggtcaccct aatgcgctag ccagacgtct aattaacccg ccaaggaaaa gaagactcaa      4680
     aaggtgtcat ccactggatc tccctactag atccctccta taacatctca ttaacttttt      4740
     gtaaatattg taaataatgt atgtacctac tccatatatg taacattaag tctatgtatg      4800
     tatctcttgt gatcaattgt ttttcccctt aaatgtaaaa ctagattaag ttgccacgaa      4860
     aggtagcagt aaacttgttt amaataaaat acaaattttc cacatgaaaa aaaaaaaaaa      4920
//
ID   Jockey-4_DRh repbase;    DNA;    INV; 4710 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4710
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1682-1682 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1011
FT                 /product="Jockey-4_DRh_1p"
FT                 /translation="MSGDSKNERRSSVDQRNSYISYFSTRDTEVERTSSKS
FT                 NSALLTIDSARARSCSPALLTPTPTSWSLQCRTPPPASTHSSPATSTATSL
FT                 ISATAATATTTSTVAVNNNAISNAFATSAAPNKTTKPIVSTSANIGNIKQQ
FT                 QVGPAIQTGMDRYIQIKRKLSPQNKMVGNKPKQNCPNKGSEQPGASSNNRF
FT                 ALLSEIDNNQSESGQAVQKKPKPPPIYIREQNSNTLVKKIVALVGNDNFYV
FT                 TPLVKGNIHETKLQAKTEDQFRAVTIT"
FT   CDS           join(1240..1908,1912..4572)
FT                 /product="Jockey-4_DRh_2p"
FT                 /translation="MKCTRSTNCNYLLHRRITVEEPHKRNGPLQCTNCQEY
FT                 GHTRNNCGLRSVCVACGGFHKSEPCPASKEDPKTKKCANCGDNHTANYRGC
FT                 PVYKELKSQFQQAKQARSQNARNAYVQSQTTPNVFFAKAARSSFGPLNTNG
FT                 GVSYASALKSGLANQTGFPQAQCSEQNIITPQQAIGQIPNSMETMMLTLQQ
FT                 GMMEFMSFMKTTMTNLMQNQNILINLLTSQQSKSMSCLRISMWNANGVSRH
FT                 KLEITQFLNENQIDVMLLAETHLTSKYNFQIRGYTSYCTDHPDGKAHGGTG
FT                 ILIRERIKHHFHQRFATNYLQATSIKLQAGNGSITIAAVYCPPRFTITEEQ
FT                 FLDFYNSLGDRFIAGGDYNAKHTHWGSRLVTPKGRQLYKAIINLSNKLDYV
FT                 SPGSPTYWPADPRKLPDLIDFAVTKNIPRNLVSAKSLSDLSSDHSPVLITL
FT                 LQSPKVIEHPFRLTSTRTNWLKYKKYVSSHIELTPQLNIENDIDFCADALE
FT                 SVLVAAAKISTPEETIVRSNQYKTNLQIEQLVREKRRLRRAWQSCRSPHSK
FT                 QLYNDATRRLTKTLKQEEELAQRRYIEKLSPTSTKHPLWRAHPNLSSPIES
FT                 VTPIRNSSGTWARSDEDRAETFALHLRNVFQPNAATNSLQLPPLSSEIAIN
FT                 PILFQAPEIANVIRKQIKPKKAPGGDLITPKMIIELPNCAVDVICKLFNGI
FT                 TKLGYYPKKWKKSVVIMIPKPGKDHTIPSSYRPISLLSCLSKLLEKCLLTR
FT                 ITPYLREQNLIPAHQFGFRESHGTIEQVNRITSEIRTAFEHREYCSAIFLD
FT                 VSQAFDRVWLEGLMHKIITLLPENTHKLLKSYLYHRVFEVRCNTTTSNEYN
FT                 IEAGVPQGSALGPTLFVLYTADIPTNERLTTSTFADDTAILSRSRCPTRAT
FT                 AQLADHLVVVEKWLSDWRIKINEQKCKHITFTLNRQSCPPLTLNSTQIPQA
FT                 SDVTYLGVHLDRRLTWRRHIECKKVHLRLKASSLHWIINSRSPLCLDFKVL
FT                 LYNSTLKPIWTYGSQLWGNASNSNVDIIQRSQSKILRTITGAPWYVRNENI
FT                 HRDLGIPPVKDEIAKQKAAYHNKLTLHPNNLARNLRRVSNRTRLHRNDLPA
FT                 QQ"
XX
SQ   Sequence 4710 BP; 1606 A; 1182 C; 913 G; 1009 T; 0 other;
     caacaaacaa cagccggaga gtgcagacgt gttttgcgcg agctccggaa aaaaaccgct        60
     caaaagtgaa aaacaataac taaaaatact ggagtggtgt aataaaggca atcttattgc       120
     taaaaacagt aaataataat tagtgctatg taaaaaacta gtgcaaagtt attataaaaa       180
     ctaagaagtg ccacgagtga tagctcaatg agcggcgatt caaaaaatga gcgtagaagc       240
     tccgtagacc agagaaacag ttatatttct tatttctcaa cccgtgatac agaagtagaa       300
     agaacttctt caaagagcaa ctcagcccta ctgaccattg acagtgcgag agcacggtct       360
     tgttctcccg ccctactcac accaactccc acttcatgga gcttgcagtg tagaacccca       420
     cccccagctt cgactcacag ctcaccagcc acgagcactg cgacctcgtt aatttctgca       480
     accgcagcca ctgcaacaac aacatcaacg gtcgccgtta acaacaacgc gatttcgaat       540
     gcgtttgcaa cttctgcagc gccgaataaa actacaaagc caattgtaag tacgagtgcc       600
     aatatcggca atatcaaaca acaacaagtg ggtccggcta tacagactgg catggaccgt       660
     tacatccaaa tcaaacggaa gctaagcccg caaaataaaa tggttggaaa taaaccaaaa       720
     caaaattgcc ctaataaagg cagcgaacaa ccaggggcat ctagtaacaa cagattcgcc       780
     ctattgtcgg aaattgataa taatcaatcc gaatctggac aggctgttca aaagaaacca       840
     aagcccccac caatttacat aagggaacag aactcaaata ccctagtaaa gaaaattgtt       900
     gcgctggtcg ggaatgacaa cttttatgtt actccccttg ttaaagggaa tattcatgaa       960
     acaaagcttc aagctaaaac tgaagatcaa ttcagagctg taacaattac ctagacgagg      1020
     ctaggaaacc ctactacacg taccagctca agagtagcaa gggcttgcaa gtagtgctaa      1080
     agggcataga gcccgacgta tccaccaatg aggtaaaaga ggcactgaaa gaaaaaggat      1140
     tcttctccaa aaatattatt aatattatca acaaaaataa aaagccgcaa ccactcttta      1200
     aggtcgaact ggagccagaa agcagagcct tgaagaaaaa tgaagtgcac ccgatctaca      1260
     aactgcaatt acctgttgca cagaaggatt actgttgaag aaccgcataa gcggaatggc      1320
     ccgctgcaat gcacaaactg ccaagagtat ggacacacca gaaacaactg cgggcttcgt      1380
     tcagtctgcg tagcttgtgg tggcttccac aaatccgaac cttgccctgc aagcaaagaa      1440
     gacccaaaga caaagaaatg cgctaactgt ggagataacc ataccgcaaa ctacagaggc      1500
     tgcccggtct ataaagagct gaagagtcag tttcaacaag caaaacaagc acgctcccag      1560
     aatgcacgaa atgcgtacgt gcaatcccaa accacaccta atgttttctt tgcgaaagca      1620
     gccagatctt catttgggcc cctcaacaca aatgggggag tttcatacgc cagtgcccta      1680
     aaatcaggac ttgccaatca gacggggttc ccacaagctc aatgctctga gcaaaatata      1740
     ataacacctc agcaagcaat aggacaaata ccaaacagca tggaaaccat gatgctgact      1800
     ttacaacagg gtatgatgga atttatgtcc ttcatgaaaa caacaatgac aaaccttatg      1860
     caaaatcaaa acattttaat aaatttgctc acatcccaac aatctaaata atcgatgtct      1920
     tgtcttcgaa tatccatgtg gaatgccaat ggcgtttcac ggcacaaact tgaaataact      1980
     caattcctca atgaaaacca aatagatgta atgctgctgg cagaaacgca tctcacaagt      2040
     aaatacaact tccaaataag aggttatact tcatactgca cagatcatcc ggacggtaag      2100
     gctcacggag gaactggaat cctaatcagg gaacgcatta agcaccactt tcaccagagg      2160
     tttgcaacaa attatttgca ggctacatct ataaaactac aagcaggcaa cggcagtatc      2220
     actatagccg ctgtctattg cccaccgcgt tttacaataa ctgaagagca attcttggac      2280
     ttctacaatt cactcggaga tcgctttata gcaggaggag actacaacgc caagcacacg      2340
     cactggggat caagactcgt gacgcccaaa ggaagacaac tgtataaagc aatcataaat      2400
     ttgagcaaca aactcgacta tgtctcccct ggcagcccca catattggcc agctgacccc      2460
     agaaaactcc cggacttaat tgacttcgct gtgaccaaga acatcccaag aaatttagta      2520
     agcgccaaat cgctatcgga cttatcatcg gaccactcgc ctgttttaat aactctcctt      2580
     caaagcccga aagtaatcga gcaccccttc aggctgacct cgactagaac taactggcta      2640
     aagtacaaaa agtacgtaag ttcccacatt gaactaacac cacagttaaa catagagaac      2700
     gacatcgact tctgtgctga tgccctggag tcagtactcg tggcagcagc caaaatctca      2760
     acaccagaag agacaatcgt gcgtagcaac caatacaaaa ctaatctgca aatcgaacaa      2820
     ctggttcggg aaaaacgacg tctacgacgc gcttggcaat cctgcagatc gccccattcg      2880
     aagcaactct ataatgatgc cacccgcaga ctcaccaaaa ccctcaagca agaagaggag      2940
     cttgcgcagc gccggtacat cgagaaactg tcgccgacca gtacaaagca tcctttgtgg      3000
     agagctcacc caaatttaag ctctccgata gaatcagtca ctccgattag aaactcctcg      3060
     ggtacttggg cccgcagtga cgaagacaga gccgaaacat ttgctttaca cctacgaaat      3120
     gtatttcagc cgaacgccgc cacaaactct cttcaactac cgccgcttag ctctgaaatt      3180
     gcaattaacc cgattttgtt tcaagcacct gaaattgcta acgtcattag gaagcaaata      3240
     aaaccgaaaa aggctccagg gggcgaccta ataaccccaa aaatgataat tgaacttcca      3300
     aactgcgcag tggatgttat atgcaagcta tttaacggga tcacaaaact tggctactac      3360
     cccaaaaaat ggaaaaagtc cgtggttata atgataccga agcctgggaa agaccacaca      3420
     attccctcat cgtacaggcc aataagctta ctatcgtgcc tgtccaaatt actggaaaaa      3480
     tgcctgctca cgcgcattac accatattta agagaacaaa acttaatccc ggcacatcaa      3540
     ttcgggtttc gtgaaagcca cggaaccatc gagcaagtca accggataac ttcagaaatt      3600
     cgtacagcct tcgaacatcg ggaatattgt agtgcgatat tcctcgacgt ctctcaggca      3660
     ttcgaccgag tgtggcttga aggccttatg cataaaatca taacattact gccagaaaac      3720
     actcataagt tacttaagtc gtacctctac cacagagtct ttgaggttag atgcaataca      3780
     acgacatcca acgagtataa cattgaagcc ggagtcccac aaggtagcgc cctgggccct      3840
     accctgtttg tcctatacac agcagacatc cctacgaacg agaggctgac tacgtccaca      3900
     tttgctgacg acaccgcaat cctgagccgc tcgagatgcc caactagagc aacagctcaa      3960
     ctggctgatc atttggtggt agttgagaag tggctatcag actggcgaat caaaattaat      4020
     gaacaaaagt gtaaacatat aacgtttacc cttaacagac aatcgtgccc gccgctaact      4080
     ttgaatagta cgcagattcc ccaagccagc gatgtaacat atctcggcgt ccacctcgac      4140
     agacgcctaa cctggcggag gcacattgaa tgcaagaaag tacatctcag acttaaagct      4200
     agcagcctac actggattat aaattctcga tcacccctgt gtctggactt taaagttctt      4260
     ctctacaact ccaccctcaa gcccatttgg acctacggct cccagctctg ggggaacgcg      4320
     agcaacagca acgttgacat catacagcgc tcacaatcaa aaatcctgcg aacaatcact      4380
     ggggcaccat ggtatgttcg gaacgaaaac atccacaggg atctgggcat accaccggtc      4440
     aaagatgaaa tagcaaagca gaaagcggcc taccataaca agcttacact gcacccaaat      4500
     aatctcgcaa ggaacctaag acgggtttcg aacagaactc gtctgcatcg taacgatcta      4560
     ccagcccagc aataaatatt agggcccgtt agtctaaatt cagtctacat gactgtaagt      4620
     taagttatat tcttaagatt tgatatactt attgttagtc tcatatagag aagattcaat      4680
     aaataaagca tatatttaaa aaaaaaaaaa                                       4710
//
ID   Jockey-4_DSim repbase;    DNA;    INV; 3489 BP.
XX
AC   .
XX
DT   15-FEB-2012 (Rel. 17.08, Created)
DT   15-FEB-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit fly, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3489
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1654-1654 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. Probably 5'-truncated. ORF
CC   corrupted.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(247..804,1203..2873,2961..3209)
FT                 /product="Jockey-4_DSim_1p"
FT                 /translation="MDPSSLKTDIIGLGLQCLDVKRVKRTRPNNSVVIFYA
FT                 IYFTKKSVSLNELRKSYSVINYVKVKWEYQRRNSNQITQCYNCQMFGHGSS
FT                 QCAVKSYCSICAGNXKTTECPEGAAVKCANCNGPHKSNDPGCPSRLSYVNV
FT                 RSQFQSNRVRPKANFISKPPQLDYTKNFPNTLNQSILNPNATWVKQMLPII
FT                 KLYYSIAVNDLGSDHLPVQTSLQSNFTRIKKYFFDITNANWIVFGRVINQL
FT                 IPECESISIQTQADIDRLITHFNSVILTAKERSIPKKEIRFAQKAIPLNIL
FT                 SLIMRRNRHRRNWLRYRNRADLVLVRWLSQLINCKLSKLRNEHWNNLLSSL
FT                 EKNSSSFWKLSKVIKKKNTSIPILRQNQQNFATAEQKAELLASIFALNHCH
FT                 SNNLSDPITISEVTNFMTSFDSSSVNEELYLSDYQEISSVLNNLKLKESPG
FT                 LDNIDNMCLKALPKKGVKYLTLIXNGCLRLGYFPQKWKHSKVIPILKTNKP
FT                 PECPTSYRPISLLSSVSKVLEKVIKKRIFDFTENNDILPSQQFGFRPEHNT
FT                 AHPLYRIKKIVKSNFSRSKSTGMVLLDIKAAFDSVWHEGLVYKLNLLHFPP
FT                 KIIKIIRSFLSNRSFAVYICDYQSRIYNLSAGCPQGSCLSPLLYNIFTSDF
FT                 PALNGCTASIFADDTAILCTGTLASNITNSLQVAFNTLVAYFNKWKILVNS
FT                 DKTQAIFFTRKRKNIYIPTNSISLNQVDINWENQCPIFRSHIRIYFSVKIF
FT                 YGAPVWADVANVHIYKIQVAQNKILKMIFNLPWHYSTVELHNLAGIELASE
FT                 RLAKLHTNFVNRNINSNYLHLQNV"
XX
SQ   Sequence 3489 BP; 1185 A; 669 C; 532 G; 1100 T; 3 other;
     atcaccaaaa acaaagttta catttctcca ataactgtgc ttaaatgctc agtggagcaa        60
     ctgcataact tttgcaaatc aattaattgc tccaaatact ctattaaaaa aatgtctatt       120
     ggaattaaac ttttctgtat ggacataaaa gactatgaat ccttcattaa aggggaaatt       180
     tgaattctct cctacgctga taaaaatgtt aaaccctaca aggtgctact ttttggactt       240
     gatganatgg accctagttc tctaaaaact gatatcattg gtttaggcct acaatgcctc       300
     gatgttaagc gcgtaaagcg aacgcgaccc aataactcag ttgtaatctt ttatgcgatc       360
     tatttcacaa aaaaatcagt ttcgcttaat gagctcagaa aatcatactc cgtcataaat       420
     tatgttaaag taaaatggga atatcaaagg agaaatagca accaaatcac ccaatgctac       480
     aattgtcaga tgtttggaca tggatcaagc caatgcgcag tcaaatcata ctgttcaatc       540
     tgtgcaggaa accncaaaac tactgaatgc ccggaaggag ctgctgtcaa atgtgccaat       600
     tgtaatggcc cgcacaaatc taacgacccc ggctgcccta gcaggttaag ttatgttaat       660
     gttagatctc aattccagtc aaatcgagta agaccaaaag ctaactttat ttctaagcct       720
     ccgcagctgg actatactaa aaatttccca aacactctta atcaatctat tttaaatcca       780
     aacgccacct gggttaaaca aatgtaacgt caaatacggg tgaagagctt ttctctttag       840
     aggaaattaa gtccttaaca tttgatctcg ttagaagttt aagaaactgc aaatccaagg       900
     cagatcaatt tgaagtgata acctcactgg cttgcaaatt tctaacataa ttctgcaaat       960
     aagcaaatat tttcaaatga tattcgacta ttgtgtacac attcgggaaa ctttgtgtta      1020
     ggaggcgact ttaattgcag gcatagactt tggggttgta accgagccaa cgcttggggt      1080
     tcaatactaa atgagttttt aatgtcacgt ggcttgtcag ttcattttcc tgaccaacac      1140
     tcctatttgc cagcgagtag tagaagtcaa tcctctacac ttgatatttt tataacaaat      1200
     agcttccaat cattaaacta tactatagta tagcagtcaa tgatctgggc tcagatcacc      1260
     tcccagtcca aacttctctt caatcaaact tcaccagaat caaaaaatat ttttttgata      1320
     ttacaaacgc aaattggatt gtttttggta gagttatcaa ccaattaatt ccagaatgcg      1380
     aatccatttc cattcaaaca caagctgaca tagacaggtt aataacacat ttcaactcag      1440
     tcatccttac agcaaaagaa cgctccattc cgaaaaaaga aattcgattt gcccaaaaag      1500
     ctattcccct caacatatta tcactaatta tgcggagaaa tcgacaccgt cgaaattggc      1560
     taaggtacag aaacagagct gatctggttc tagttagatg gctcagccaa cttatcaatt      1620
     gcaagttatc caaacttaga aatgagcatt ggaataacct tttatcctcg ctcgaaaaaa      1680
     attcttcctc cttttggaaa ctatcaaaag ttataaagaa gaaaaatacc agcattccaa      1740
     ttttaagaca aaaccaacaa aattttgcaa cagctgaaca aaaagccgaa ctattggcat      1800
     caatattcgc cttgaatcat tgccattcaa acaatctaag tgatcctata acaatatctg      1860
     aggtcactaa ctttatgaca tcatttgact cgtcgtctgt aaatgaggag ttgtacttgt      1920
     cggactatca agaaatttct tcggtcctta ataaccttaa attaaaagaa tctcctggtc      1980
     ttgacaacat tgacaacatg tgtttgaaag ctctccctaa aaaaggggta aagtatttaa      2040
     ccttgattat naatggttgc cttcgcttag gttattttcc acagaaatgg aaacactcca      2100
     aggttatccc cattttaaaa acgaacaagc ccccagagtg tcccacatct tatagaccca      2160
     taagtctgct ctcttcggtt agtaaagttc ttgagaaagt tatcaaaaaa aggattttcg      2220
     actttactga aaacaatgat atacttcctt cccagcagtt tggttttcgt cctgaacaca      2280
     atactgcaca ccctctttat agaattaaaa aaattgttaa gtcgaacttt agtagatcca      2340
     aatccacagg catggtctta ctagatatta aagcggcctt cgattctgtt tggcatgaag      2400
     gtcttgttta caaattgaat cttttacatt ttccgcctaa aattattaaa ataataagaa      2460
     gtttccttag taaccgctcc tttgctgtat atatatgtga ttatcaatct cgaatatata      2520
     acttaagtgc aggctgtccg caaggatctt gtctttcccc acttttgtac aatatattca      2580
     cctctgattt ccctgcctta aatggatgta ctgcatcaat ttttgcagat gatactgcaa      2640
     ttctttgcac tggaaccctt gcaagtaata ttacaaattc tcttcaagta gcttttaata      2700
     cccttgtggc atatttcaat aaatggaaaa ttcttgtaaa ttcagacaaa actcaagcta      2760
     tattttttac aagaaaacgg aaaaatattt atatcccaac gaacagtata tctcttaacc      2820
     aagtggacat aaattgggaa aaccaatgtc cgatatttag gagtcatatt agataaaaag      2880
     cttaattttt cagatcgcat tcaacatatt ataaatagaa attctcgact aagcatagaa      2940
     aataaaatgt acttatttag atctattttt cagtcaaaat tttttacggg gcaccggttt      3000
     gggccgatgt tgctaatgtt catatttata aaatccaggt ggcacaaaac aaaatattaa      3060
     aaatgatatt taatcttccg tggcattact ctactgtgga gttgcacaac ttagctggga      3120
     ttgaactggc ctcagagaga ttggccaaat tacacaccaa ctttgtaaat agaaacatta      3180
     attctaatta tttacacctt caaaatgttt aatattattg taagatataa gtctagtttt      3240
     taagatagtt tgaaattatt agttttaagt ttatatatta atgtttcttt atgggggttt      3300
     tttgtactaa aattttcccc tcattataat caatgattaa tcccaattta tcttctgtat      3360
     aaaacatatt tctaagtaga aaaggttgaa aaaggcctgt actcttaatg ctcatgtatc      3420
     ataatcactc acacttgtgt aatattgcaa attttttata aataaagtgt tccatatata      3480
     tatatatat                                                              3489
//
ID   Jockey-4_DSuz repbase;    DNA;    INV; 4712 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4712
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 595-595 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..1903
FT                 /product="Jockey-4_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MSYEQNKERLSSASRRDGYFSYVSTRDSEVQKTTLLS
FT                 VDSQRARSCSPCLLTATPTPTAWSQQCKTPPPSVSTPGAPTTCNGKTSASA
FT                 LNLSATTTATAKKPTTTTATTIISESTATAALNTTATKTTTTNQNQNKIQQ
FT                 AGPAIQTGLDRYIHIKRKLSPQNTAVGNKSKINRVQVEDILPGRSDSNRFA
FT                 LLAENESGRAQETQPKPKPPPIYIREKISNALVNKIVALTGDGNFHVVPVT
FT                 KGDIHETKLQTKSEEHFRAVSKYLEEARKSYYTYQLKSSKGLQVVIKGIEP
FT                 DVTAKEVIDALKEKGFSAKNVSNIINRKKEPQPLFRVELEPDSRVLKKNEV
FT                 HPIYNLQYLLHRRINVEEPHKRNGPVQCTNCQEYGHTRAYCSLRTVCVACG
FT                 DFHNSANCPANKEDPKKKKCVNCQGNHTANYRGCPVYKEMKDRMRKVIATR
FT                 HQNTQNAYTYSRTTPEVFFGTAARSSFGQLNTQKGFSYADALRSGTENPLQ
FT                 SNLGNAQQIQEQSQSTLETMMVTMQQSMMELMSFMKTTMQTLVQNQNMVLQ
FT                 LLAAKQSK"
FT   CDS           1911..4565
FT                 /product="Jockey-4_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANLRITMWNANGVSRHNLEVTQFLNENHIDIMLLVE
FT                 THLTNKYNFQIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFHQRFSTNYL
FT                 QATSIKVQSGNGNLTIAAVYCPPRFTISEGQFMDFYNLLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKPNNKLDYVSPGSPTYWPTDPRKVPDLID
FT                 FAVTKNIPRNIISAKALSDLSSDHSPVLITLLQSTRTTDHPLRLTSHRTNW
FT                 LKYKKYVSSHIKLTPHFNIEADIDCSTDALEEVFVEAATISTPQGRDAQTN
FT                 HFKTNLQIERLVLEKRRLRRAWQANRSPSSKQRLKEATRSLNRALKQETEN
FT                 AQLQYITKLSPTSTKHPLWRAHPNLSSPIETVTPIRNSSGIWARSDEDRAE
FT                 TFALHLRNVFQPNPATGSFFLPQIESESISLPPLFQPKEIAKVIGELKPKK
FT                 APGGDQITPKMLIELPNSAIEVICKLFNGIITLGYYPKKWKKSIIIMIPKP
FT                 GKDHTIPSSYRPISLLSCLSKLFEKCLLTRITPYLGAHNVIPAHQFGFRQN
FT                 HGTIEQVNRITSEIRTAFEHREYCSAIFLDVSQAFDRVWLDGLMHKIKTHL
FT                 PDYTHKLLESYLYNRTFAVRCNTTTSDDYIIKAGVPQGSALGPTLFLLYTA
FT                 DIPTNEQLTTSTFADDTAILSRSRCPGRATTQLANHLLVVERWLSDWRIKI
FT                 NEQKCKHITFTLNRQTCPPLLLNNTQIPQVNDVTYLGVHLDRRLTWRRHIE
FT                 RKKVHLKLKASSFHWILNARSPLRLDYKVLLYNSTLKPIWTYGSQLWGNAS
FT                 RSNIDIIQRAQSKILRTITGAPWYIRNQNIHRDLSILTVKDEIDKQKASYN
FT                 EKLSVHPNRLARGLTWVSSRSRLQRNDLPSQL"
XX
SQ   Sequence 4712 BP; 1602 A; 1232 C; 911 G; 967 T; 0 other;
     cgcgaccgct gaagagagtg gacgtgtctt gtgcgagctc cgcgaaaagt gcaagaaagt        60
     tgataaatta aatgcaaaca aaacacaaaa actaaactgg ttaatttcaa ataagcgaaa       120
     agacgctaaa acccaaagaa atttaggttt caacacaaaa tcggtgtaat gactttaact       180
     agcacataca ttttttcatc ttataataat aaataagtgc cacgctaata aaagctcaat       240
     gagctacgaa cagaataaag agcgactcag ctccgcgagc cgaagagacg gttacttttc       300
     gtatgtctca acgcgtgata gcgaagtgca aaaaacgacc ctactgtcgg tcgatagcca       360
     aagagcacga tcttgctcac catgcttact tacggctacc cctactccga cggcgtggag       420
     tcaacaatgc aaaacccccc caccatcagt ttcgacccct ggcgcaccaa caacatgcaa       480
     cggtaaaact tctgcatccg cactaaattt gtcagcaaca actacagcta cggcaaaaaa       540
     accaacgaca accacagcta cgactattat ttcggaatcg actgcaaccg cagctctaaa       600
     tacaacggca acaaaaacca cgacaacaaa tcaaaaccaa aacaaaattc agcaagcggg       660
     tccggccata cagaccggac tagatcggta catccatatc aagcgtaagc ttagcccgca       720
     gaacaccgcg gtaggtaaca agtcaaaaat aaaccgtgtc caagtagaag atatattacc       780
     cgggagatcc gacagcaatc gatttgcgct tctagcagaa aatgaatcag gacgggctca       840
     ggagacccaa ccgaaaccta agcccccacc aatttacatt agggagaaaa tctcgaacgc       900
     cctggtcaac aaaattgttg cgctgaccgg agacggaaac tttcatgttg ttccggtcac       960
     aaaaggggat atccatgaaa ccaagcttca gaccaaatct gaagaacatt tccgagcagt      1020
     atccaaatac ctggaggaag ctaggaaaag ctactacacg taccaactaa aaagcagcaa      1080
     gggcctgcaa gtggtaataa aaggaatcga gcccgacgta accgccaagg aagttatcga      1140
     tgctctcaag gaaaaagggt tttctgcaaa gaacgtcagt aacattataa acaggaaaaa      1200
     agagccgcaa ccactcttca gggtcgagct ggagccagac agcagagtct tgaagaaaaa      1260
     tgaagtgcac cccatttata acctgcaata cttattgcac cgaagaatta acgtggaaga      1320
     gccacataaa aggaacggcc cagtgcaatg cacaaattgt caggagtatg gacacaccag      1380
     ggcatactgt tcgcttcgaa cagtctgtgt agcttgtgga gacttccaca attcggctaa      1440
     ctgccctgcc aacaaagaag accccaaaaa gaaaaaatgc gttaactgcc aaggtaacca      1500
     cacggcaaac tacaggggct gtccggtcta caaggagatg aaggaccgca tgcgaaaagt      1560
     gatagcaacg cgtcatcaga atacccaaaa tgcgtacact tactcgcgta cgacgccgga      1620
     agtatttttc ggcacggctg caagatcctc ctttggtcaa ctaaataccc agaagggatt      1680
     ctcatacgcc gatgcccttc gatcggggac ggaaaaccca ctccagtcta atctaggaaa      1740
     cgctcagcag atccaagaac agtcgcaaag cactctggaa actatgatgg tcaccatgca      1800
     acaaagtatg atggaactca tgtcattcat gaaaacgacc atgcaaacac tggttcaaaa      1860
     ccagaacatg gtgttacagc tacttgcagc taagcagtcc aaataatcag atggcaaatc      1920
     tacgaataac aatgtggaac gccaatggcg tttcacggca caaccttgaa gtaacacagt      1980
     tcctgaatga aaatcatatc gacattatgc tactggtaga gacgcacctc acaaacaaat      2040
     acaacttcca aataagaggc tacactttct accgcacaga ccatccagat ggtaaagccc      2100
     acggcggaac cggcatccta atcagggaac gcatcaagca ccactttcac caaaggtttt      2160
     caactaatta cttgcaagcc acgtctatca aagtgcagtc aggcaacgga aacctcacca      2220
     tagccgctgt ctactgcccg cctcgcttta caatttctga aggacaattc atggacttct      2280
     acaacttgct tggagaccgc tttatagctg caggggacta taatgccaaa cacacgcact      2340
     ggggatcacg ccttgtgact cccaaaggaa ggcaattata caatgcaatc ataaaaccga      2400
     acaacaaatt agactatgtt tcccctggca gccccacata ctggccaaca gaccccagga      2460
     aagttccaga cctaatagac tttgcggtga caaaaaacat tccccgcaat ataataagcg      2520
     ccaaagcgct ttcggacctg tcgtcagacc attcgccagt gctaataact cttcttcaaa      2580
     gcacaagaac cacagatcac cccctcaggc tgacgtcgca cagaaccaac tggttaaaat      2640
     ataaaaagta tgtaagctca cacatcaaat taacacctca cttcaacatc gaagcggaca      2700
     tcgactgctc taccgatgct cttgaagaag tattcgtgga ggcagccact atctcaacac      2760
     cacaaggcag ggacgcgcaa accaaccact tcaaaactaa tctgcaaatt gaacggttag      2820
     tcctagaaaa gaggcgcctg cgacgtgcct ggcaagccaa cagatcgccg tcatcaaaac      2880
     aacgtcttaa ggaagccact cgctcactaa atcgagctct aaagcaagaa acagaaaatg      2940
     cacagctgca gtacattaca aaactatcgc caaccagtac aaaacatcct ctgtggaggg      3000
     ctcacccaaa tctgagctct ccaatcgaaa cagtgactcc gataagaaac tcatctggca      3060
     tctgggcccg cagcgacgaa gatagagccg aaacttttgc gttacatcta agaaacgtct      3120
     tccagccgaa ccctgccact ggttcatttt tcctaccaca aatcgaatct gaatctattt      3180
     ccctaccacc attgtttcag ccaaaggaga tcgcgaaagt cattggggaa ctgaaaccaa      3240
     aaaaggcccc tggcggtgac caaataaccc caaaaatgtt aattgaactt ccaaactctg      3300
     ccattgaggt tatctgtaag ctcttcaatg ggattataac tctcggctac tatccgaaaa      3360
     aatggaaaaa atctattatc attatgatac cgaagcccgg aaaagaccac acaattccgt      3420
     catcctacag accaattagt ttattatcgt gtctgtctaa gctgttcgaa aaatgccttc      3480
     taactcgcat aacaccatat ctaggagcac acaatgttat ccctgctcat caatttggat      3540
     ttcgtcaaaa ccatggaaca atcgaacaag ttaacagaat aacatcagaa atacgcacag      3600
     cctttgagca tcgggaatac tgcagcgcaa tattcctcga tgtatctcaa gccttcgatc      3660
     gagtatggct agatggcctc atgcacaaaa tcaaaacaca cttacctgat tacactcaca      3720
     agcttcttga gtcgtatcta tacaacagga ccttcgcagt aaggtgcaat acaacaacat      3780
     ccgacgacta cattatcaaa gctggagtcc cgcaaggaag cgcgctaggg cctactctgt      3840
     tcctcctata cacagcggat attcccacga acgagcagct aacaacatct acgttcgctg      3900
     acgacaccgc aattttaagt cgctcgaggt gcccaggccg agccacaaca cagctagcaa      3960
     accacctcct cgtagtagag aggtggctat ctgattggcg gattaaaata aatgaacaaa      4020
     aatgtaaaca cataacgttt actctcaaca ggcaaacatg ccctccacta ttattgaata      4080
     atacgcagat tccccaagtc aacgatgtaa cgtatctcgg cgtccacctt gacagacgac      4140
     taacctggag aagacacatc gaacgcaaga aagtacatct aaaactaaag gccagcagct      4200
     tccactggat tcttaacgct cgttcgcccc tgcgtctgga ctacaaggtt ttgctctaca      4260
     actccactct caagcccatc tggacatatg gctcccagct atgggggaac gccagcagaa      4320
     gcaacataga cattatacag cgcgctcaat cgaaaatcct gcgaactatc actggggcac      4380
     catggtatat tcgcaaccaa aacatccaca gggacctaag cattcttacc gttaaagatg      4440
     aaatagacaa acaaaaagcg tcctacaacg aaaaactctc tgtgcacccc aatcgcctcg      4500
     caagaggctt gacttgggtt tccagccgat cccgtctaca acgcaacgac ctgccaagcc      4560
     agctataact ttcgggcccc tttagcacaa catcagtcat atgactgtga gttagattaa      4620
     ttagtctaag atttgataca cttattgtta gtatccaaag ggagaagatt caataaataa      4680
     atagcaaagc atttaaaaaa aaaaaaaaaa aa                                    4712
//
ID   Jockey-4_DT repbase;    DNA;    INV; 3415 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3415
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1706-1706 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. ~95% identical to Jockey-4_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3415 BP; 1146 A; 873 C; 663 G; 732 T; 1 other;
     caactcctmt ttactcctct tgtcaaaggg aatatgcacg aaacaaagct tcaagctaaa        60
     actgaagatc aattcagagc tgtaaccaaa tacctagacg aggtaccagc tcaagagtag       120
     caagggcttt caaatagtgc taaagggcat agagcccgac gtatccaaaa atgagataat       180
     agaggcactg aaagaaaaag gatttttcgc aaaaaatatt attaatattt tcaacagaaa       240
     taaaaagcaa ccactcttta aggtcgaact ggagccagaa agcagagcct tgaagaaaaa       300
     tgaagtgcac ccgatctaca aactgcaatt cctgttgcat agaaggatta ctgttgaaga       360
     accgcatatg caatgcataa actgccaaga gtacggacac accagaaaca actgcgggct       420
     tcgatcagtc tgcgtagctt gtggaggctt ccacaactcc gaaccgtgcc ctgcaagcaa       480
     agaagaccca aagacgaaga aatgcgctaa ctgtggagaa aaccataccg caaactacag       540
     aggctgcccg gtctataaag agctaaagaa acagaatgca caaaatgcat acgtgcaatc       600
     caaagccaca cctgatgttt tctttgcgaa agcagccaga tcttcatttg ggcccccaac       660
     acaaatgggg gagtttcata cgccagtgcc ctaaaaacag gacttgccaa ccagacgggg       720
     atcccacaag ctcaatgctc cgagcaaaat ataataacac ctcagcaagc aataggacaa       780
     ataccaaaca gcatcgaaac catgatgctg actctacaac agggtatgat ggaatttatg       840
     tctttcacga aaacaacaat gcaagacctt atgcaaaatc aaaacatttt aataaatttg       900
     ctcacatccc aacaatctaa ataatcgatc ttgccttcga atatccatgt ggaatgccaa       960
     tggcgtttca cggcacaaac ttgaaataac tcaattcctc aatgaaaacc aaatagatgt      1020
     aatgctgctg gcagaaacgc atctcacaag taaatacaac ttccaaataa gagggcatac      1080
     tttatactgc acagatcatc cggatggcaa ggcccacgga ggaaccggaa tcttaatcag      1140
     ggaacgcatt aatcaccact ttcaccagag gtttgcaaca aattatttgc aggctacatc      1200
     tataaaatta caagcaggca acggcagtat cgctatagcc gctgtctatt gcccaccgcg      1260
     ttttacaata actgaagagc aattcttgga cttctacaat tcactcggag atcgctttat      1320
     agcaggagga gactacaacg ccaagcacac gcactgggga tcaagactcg tgacccccaa      1380
     aggaaggcaa ctgtataaag caatcataaa tttgagcaac aaactcgact atgtctcccc      1440
     tggcagcccc acatattggc cagctgaccc cagaaaactt ccggacttaa ttgacttcgc      1500
     tgtgaccaag aacatcccaa gaaatttagt aagcgccaaa tcgctatcgg acttatcatc      1560
     ggatcactcg cctgttttaa taactctcct tcaaagcccc aaagtaatcg agcacccctt      1620
     caggctgacc tcgcatagaa ctaactggct aaagtacaaa aagtacgtaa gttcccacat      1680
     tgagcttaca ccacagctta acactgagaa tgacatcgac ttctgtgccg atgccctgga      1740
     gtcggtactc gtggcagcag ccaaaatctc aacaccagaa gagacaattg tgcgtagcag      1800
     ccaatacaaa actaatctgc aaatcgaaca actggttcgg gaaaaacgac gcctacgacg      1860
     agcttggcaa tcttgcagat cgccccattc gaagcaactc tttaatgaag ccacccgcag      1920
     actcaccaaa acccttaagc aagaagaaga gcttgcgcag cgccggtaca tcgagagact      1980
     gtcgccgacc agcacaaagc atcctttgtg gagagcccac ccaaatttaa gctctccgat      2040
     agaatcagtc actccgatta gaaactcctc gggtacttgg gcccgcagtg acgaagacag      2100
     ccgaaacatt gctttgcacc tacaaaatgt atttcagcca aacgccgcca caaactcttt      2160
     tcaactaccg ccgcttagct ctgaaattgc aattaacccg attttgtttc aagctcctga      2220
     aattgctaat gtcattagaa agccaattaa aaccgaagaa ggcttcaggg ggcgacctgc      2280
     tcacgcgcat aacaccatat ttaagagaac aaaacgtaat cccggcacat caattcgggt      2340
     ttcgagaaag ccacggaacc atcgagcaag tcaaccggat aacatcagaa attcgtacag      2400
     ccttcgaaca tcgggaatat tgtagtgcga tattcctcga cgtctcccag gcattcgacc      2460
     gagtgtggct tgaaggcctt atgcataaaa tcataacatt actgccagaa aacactcata      2520
     agttacttga gtcgtacctc taccacagag tcttcgaggt gagatgcaat gcaacgtcat      2580
     ccaacgagta taacattgaa gccggagtcc cacaaggtag cgcactgggc cctaccctgt      2640
     ttgtcctata cacagcagac atccctacga acgagaggct gactacgtcc acatttgctg      2700
     acgacaccgc aatcctgagc cgctcgagat gcccaactag agcaacagct caactagctg      2760
     atcatttggt ggtagtcgag aaatggctat cagactggcg tatcaaaatt aatgaacaaa      2820
     gtaaaatgta cgttaccctt aatagacaat cgtgcccccg ctaactttga atagtacgca      2880
     gatcccccaa gccagcgatg taacatatct cggcgtccac ctcgacagac gcctaacctg      2940
     gcggaggcac attgaatgca agaaagtaca cctcagactt aaagctagca gcctacactg      3000
     gattataaac tctcgatcac ccctgtgtct ggactttaaa gttcttctct acaactcaac      3060
     ccttaagccc atttgacttt gcgagcaaca gcaacgttga catcatacag cgctcacaat      3120
     caaaaatcct gcgaactatc actggggcac catggtatgt tcggaacgaa aacatccaca      3180
     gggatctggg cataccaccg gttaaagatg aaatatcaaa gcagaaagcg gcctaccata      3240
     ataagcttac actgcaccca aataatctcg caaggaacct aacacgggtt tcgaacagaa      3300
     ctcgtctaca tcgaaacgat ctgccagccc agctatattc ttaagatttg atatacttat      3360
     tgttagtctc attatagaga agattcaata aataaagcat ataaaaaaag aaaaa           3415
//
ID   Jockey-4_DVi repbase;    DNA;    INV; 5310 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5310
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1945-1945 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           551..2386
FT                 /product="Jockey-4_DVi_1p"
FT                 /translation="MATNNRPQNNEEIHSPIYPLPNSSIISPTNIAANVDR
FT                 LDGSRPLEDFYQYYNNVLASSANRNGASTSLSAGTQQCSTWQPQQHGTVST
FT                 TTATTTTTTASSSSGCRTSASTGTSRAALEPIGTRPKAANPTLQSTPYGTQ
FT                 AAGSCVTNPPLPPIKNAGATPAFEEPLVDWQTVSAKKRRGTTLLSEGVKKG
FT                 KQLNNRNTSRAGAKPATPSTASAISNRYASLEPQEDASVIDDGEMDTADEA
FT                 PPVTDQQQSAKKISKPRPITVPGVSDIVAMERTIDQAVGADAYEFKVSPSG
FT                 YLRIYAKDADTHRAIVRKLTEVRVQFTHFCLKEDRPYRVVVKNLAASTPRS
FT                 QIEAAFTSHGHIVTNLYNPGARQPTSDADSTNDFPSRNFWFVDLKQSLNNR
FT                 EALRLNKVGRQRVTIELPRKNNSIRQCFRCFEFDHTKNYCLKQPKCGRCGQ
FT                 SHWTNSEQCQAKTVADLRCSNCEGNHAASYKGCKSYQVRLNARQPAINVSP
FT                 PTRYSHPQNTRRTTQQFVPSRIVQQGLSYADALRPGHHVQVRQPPARTLQP
FT                 TVNPMQLQQPLQGPQEQDASLGGILQNLQQSIAALNAAVATILVSIKELKD
FT                 AQGSPQLRFPKSRK"
FT   CDS           2389..5106
FT                 /product="Jockey-4_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MATQLRLGSWNARGILQNANELKLFLKKHDVDIMLIS
FT                 ETHLHTNLYLTMEGYVCYRADHPTGRARGGAVVLAKQDLAHYHLHTVTSSD
FT                 TQLAAIMVETPLGEILVAAAYLPPNIPWNRAEFDSLFGQLGPKFIVGGDFN
FT                 AKHRLWGNYRADSRGTALHEALTPCSAQVLATGRPTHFPYNRQSTPSCIDF
FT                 FIFKGIPNSVLSVREEYDLSSDHLPLLTTINTAAQRIPKKRRLVLPGSNIQ
FT                 RFKAELNSLINLNTQILSVEDVDAAVQTLLDQVHAAAANAAPAHIYSAPTS
FT                 QRPRTFSPILEGLLALKKRLRREYVRTQDPTIDRIYRRIANRVRKELIISK
FT                 RNATDTMLEEATADESSKFALWKLSSRYKRQAAPKFPVRLPDDTWARSPMD
FT                 RAEAFACNLEERFKPFETASHARIQRVAQILEAPLQMSLPVSPITFQEVEQ
FT                 EMKRLKSSKAPGEDRLDNQTIKLLPYKAVLFLVAIFNAALRLGYFPVAWKK
FT                 AHIIMLHKSGKPPNQLGSYRPISLLPAFGKILERCILRRVLDTPEIKRLIP
FT                 KFQFGFRLKHGTPEQLHRVTNYILDGFHRKEYVVAAYLDIQEAFDRVWHAG
FT                 LLSKIKDKLNPQLFSTIASFLTERTFQVVQDGVASQTKRIKAGVPQGSVLG
FT                 PTLYSLFTHDMPTANASRRNDRQDLLVATFADDTAILAKNKCVYVATDLLQ
FT                 EYLKRFENWACRWNIAVNPGKCATVTHTLRKDSCPGLFLHGELLEQYRQHK
FT                 YLGVTLDRRLTFSKHVSAVTSNIKSKIRRMSWLLNSKNKLSLRNKVLIYKV
FT                 ILAPVWRYGLQVYGIAAKTHLNKIRIIQAKTLRKITGAEWYIRTRDIAKDL
FT                 KVPMVGDIVNRQAASYSTKLHNHPNILARSLLRRRRRRRLKRTYPTDLIDR
FT                 YV"
XX
SQ   Sequence 5310 BP; 1549 A; 1471 C; 1188 G; 1102 T; 0 other;
     cacttacgtt tgtgtttctc tggagatcgg acgtgaaaat tgcagtctcg tgtgtgtgtg        60
     cgcgttagtg caccgctggc agcaggcata aaccaagaaa gtgacagtga cactgtataa       120
     agcccgcccc agggcaatcc atacaaatcc cgcttatagt gggtaaacta tacgcaactg       180
     ctgcctctgg cagccggagt gttatacaaa ttaacaatat tttaacaaaa aaattaccgc       240
     gtgcagtgcg tgagaacaag ttcttgcaaa acttaagctg cgctcagctg atcgcaactc       300
     aagtgcgtgt gtgtgtgcgc gagtgcagca aagctttcgc gagagagctt tcagcttgca       360
     gctgcactga tagtgctggc aaaacagtca ctgcagtgac agtgctgaca ctaaagtcac       420
     aatttgtgat caatcacttg ttacaaaaat acgggttatt tttgtaatta agtgtaaaaa       480
     acttgttttg tttttatttt ttattctttt ttctccctgt ggggaaaaaa ttataacaaa       540
     gtaaagaaca atggctacaa acaaccgacc ccaaaacaac gaagaaattc attcgccaat       600
     ctacccgctg ccgaacagct caattatatc ccctacaaat atagccgcta atgtcgatcg       660
     cctcgacgga agcaggccac tggaagattt ttaccaatat tacaacaacg tgctcgccag       720
     tagtgcaaac cggaacggcg cctccacctc gctgtcagcc ggtacccagc aatgctcgac       780
     ttggcaaccg caacagcacg gcactgtcag cacaacgaca gcaacaacca ccacaaccac       840
     agcgtcatcc agcagcggct gcaggacatc tgcctcaaca ggcacaagcc gcgccgcttt       900
     agagcccatc gggacccgcc ccaaagccgc caatccgacc ttgcagtcca ccccttatgg       960
     cacccaggca gctggttctt gtgtcacaaa cccccctctg cctcccataa agaacgcagg      1020
     tgctacgcca gccttcgaag agccactggt agattggcaa acggtttccg caaaaaaacg      1080
     gcgtgggact acattattat ccgaaggcgt aaaaaaaggg aagcaactaa ataaccgcaa      1140
     caccagccgc gctggagcta agcccgcaac tcccagtacc gcttcggcaa ttagcaacag      1200
     atatgcctcc cttgagcctc aggaagacgc ctctgtaatc gatgacggcg agatggacac      1260
     tgccgacgaa gcgcctccag tcacagacca acaacaatca gcgaaaaaga tctccaaacc      1320
     caggccgata acagtccctg gagtcagcga tattgtcgca atggagcgaa ccatagatca      1380
     ggcagtgggc gcagacgcct atgaattcaa ggtctctccc tctggctatc taagaattta      1440
     cgccaaagat gccgacaccc acagagcaat tgtccgcaag ctcactgaag tgagagtgca      1500
     atttacccac ttctgcctaa aggaagacag accataccgc gttgtggtta aaaatctggc      1560
     cgcttccact cccagaagcc agattgaagc tgcctttaca tcgcacggcc atattgtgac      1620
     gaacctttac aacccgggcg ccagacagcc aacaagtgat gcagactcca ccaacgactt      1680
     tccaagtcgc aacttctggt ttgtcgatct caagcagtct cttaacaaca gggaagcgct      1740
     gcggctcaac aaggttggcc gccaacgggt cactattgag cttccgagga agaacaatag      1800
     tataaggcag tgtttccgct gcttcgagtt cgaccacacc aaaaactact gtctcaaaca      1860
     gcccaagtgt ggtaggtgcg gtcagtccca ttggacaaac tccgagcagt gccaggccaa      1920
     aacagtggca gacctgcgat gctccaactg cgagggaaac catgctgctt cctataaagg      1980
     atgcaaaagc tatcaggtga gactaaatgc caggcagccg gccatcaatg tctcccctcc      2040
     tacacgatat agccatcctc aaaatacacg aagaaccact cagcagttcg taccttcccg      2100
     aattgtgcaa cagggcctgt cgtatgctga tgcgctacgg ccaggccatc atgtacaagt      2160
     ccgccaaccc ccagcgcgca ctcttcagcc caccgtcaat ccaatgcagc tccaacaacc      2220
     actgcaaggg cctcaggagc aagacgcttc ccttggaggc atccttcaaa acctccagca      2280
     gtccattgca gcactgaatg ccgcagttgc aaccattctg gttagcatta aagagctaaa      2340
     ggatgcgcaa ggttccccgc agcttagatt cccaaaaagc cgcaaataat ggctacccag      2400
     ttacgtctcg gatcgtggaa cgctcgtggc atcctccaaa atgctaacga gctcaagctt      2460
     tttctgaaaa agcatgatgt agacatcatg ctcatctcag aaacacatct gcacacaaac      2520
     ttgtacctaa caatggaggg gtacgtctgc taccgtgcgg atcaccctac aggacgagcc      2580
     agaggtggtg ctgtagtgct ggcaaagcag gatttagcac actaccatct acacacagtg      2640
     acctccagcg acacacagct ggctgctatc atggtggaga ctcccttggg cgaaatcctc      2700
     gttgcggcag catacctacc accaaacatc ccctggaacc gagcggaatt tgattccctg      2760
     tttggccagc ttggccccaa attcatcgtt ggaggcgact tcaacgctaa gcacagactg      2820
     tggggaaact acagagctga cagcagaggc actgcgctcc atgaggcgct cactccctgc      2880
     tcagcccagg tactggccac cggtagacct acccactttc cgtacaaccg gcaaagtacg      2940
     ccttcctgta tcgacttttt tatattcaag ggcatcccca acagcgtact atcggttcgc      3000
     gaagagtatg atctatcttc cgaccatctg ccactcctca caacgatcaa cacggctgca      3060
     caaaggatcc caaaaaagcg caggcttgtc ctccctgggt cgaacatcca acgatttaag      3120
     gccgaactaa atagcttgat caacctaaac acgcagattc tgtcagttga ggacgtcgac      3180
     gctgcagtac aaaccctgtt ggaccaagta catgccgcag ccgccaacgc tgcgcccgca      3240
     catatctact cagcccctac aagccagcgg ccaaggacgt tttcccccat attggaaggt      3300
     cttctcgccc taaaaaagcg actgaggagg gagtatgtcc gtacccagga ccccacgatt      3360
     gacaggatct atcgtcgtat tgctaacagg gtcaggaagg agctgattat ctcgaaaaga      3420
     aatgccacag acaccatgct ggaggaagca acggcagacg agagctccaa attcgcgctg      3480
     tggaaactta gcagtcgata caagcggcaa gctgcgccaa agttccccgt tcgacttccc      3540
     gatgacacct gggccagatc accaatggac agagccgaag cctttgcctg caacttggag      3600
     gagcgcttca agccgtttga gaccgcatcg catgcaagga tacagcgagt cgcgcaaatc      3660
     ctggaggcgc cactccaaat gtcactccct gtatcgccaa tcaccttcca agaagtagag      3720
     caggagatga agagattaaa aagcagcaaa gcccctgggg aagatcggtt ggacaaccag      3780
     acaatcaagc tactgccata caaggcggtg ctttttctcg tcgccatttt taatgcagct      3840
     cttcggctag gttactttcc agtggcttgg aagaaggcac atataatcat gttgcacaag      3900
     agcggaaagc cccctaatca actgggatcc tatcgcccca tcagcctcct gcctgccttt      3960
     ggtaagattc tggaaaggtg catcctcaga agggtcctgg ataccccgga aataaaacgc      4020
     ttgatcccga agttccagtt tgggtttcga ctcaaacacg gtacccctga gcaactacat      4080
     cgggtcacaa attatatttt ggacggcttt cacaggaaag agtatgtggt ggcagcatac      4140
     cttgacatcc aagaagcctt cgaccgggtg tggcacgcag gactcctctc taagataaag      4200
     gacaaattga atccgcagct atttagcacc attgcgagct tcctaactga gagaaccttt      4260
     caagtggtgc aggatggagt agcctctcaa accaaacgca taaaagcggg cgttccacaa      4320
     ggcagcgtct tgggtcccac gctatatagc ctgtttacac atgacatgcc cacagcaaat      4380
     gcaagcagac ggaatgatcg gcaggacctt ctggtggcca cgtttgctga cgacacggca      4440
     atccttgcaa aaaacaaatg tgtgtacgtg gcaactgacc tcttgcagga atacctcaag      4500
     cgatttgaaa actgggcttg tagatggaac atcgcagtga accctggaaa gtgcgccacg      4560
     gttacccaca ctctacgcaa ggactcatgc cccggacttt ttcttcatgg tgagcttcta      4620
     gagcaatatc gtcaacacaa gtacctaggt gtcactctcg acagacgact tacatttagt      4680
     aagcacgtct ctgcagtaac gagcaacatc aaatctaaga taaggcgaat gagctggctc      4740
     ctcaactcca aaaacaaact ctcgctccga aacaaggtcc taatctacaa ggtaatcctt      4800
     gccccagtgt ggcgttacgg gcttcaagtt tacggtatag ctgcaaaaac acacctgaac      4860
     aaaattcgca tcattcaggc caaaaccctg cgcaaaataa ctggagccga atggtatatt      4920
     cgcacacgcg acatcgccaa ggacctcaag gttccaatgg tgggcgacat agtcaacagg      4980
     caagcagcga gctactcaac aaagctccac aaccatccaa acatcctggc gaggagcctg      5040
     ctaaggaggc gaagaagaag gcgactgaag aggacctacc caaccgacct aatcgatcgt      5100
     tatgtatagg tgacaagctt cgttaattac accaaaatat gtttctgtaa tctgttaacc      5160
     taattgtata actaattgta aaaccacaat catcgctaag ctaagtaatt atgtcactct      5220
     gataaaagtt gctaacatag agtaacagga taccagattt cttaataaac aaaatataaa      5280
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa                                       5310
//
ID   Jockey-4_DYa repbase;    DNA;    INV; 2392 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2392
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1925-1925 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~99% identity.
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2199
FT                 /product="Jockey-4_DYa_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="PTYYPSAXNRRPSCLDXAIYRNIPHDKLNIRDSWDLE
FT                 SDHLSLITTLKTEATQCTQRRQLLSKHTNVAVFKEELCRSIRLNIKINSAA
FT                 EIDDAVDLFTTNVTNAARSANMHTVNNHSRALIRHSNRFDPTIAEMLVRKR
FT                 ALRRRYIRTHSPEDKAQWHRCARELHVAMAELKNAQFEHMLTNMDYSNDST
FT                 FNMWSFTKKVKRMPQKVTPLKNSNGNWCRSLEEQVQTFAEHLGDRFTAFNF
FT                 ASEGDINSINEVLQRPFQMSPPIRPIRLEEVSNMIRTLKRRKAPGHDLISN
FT                 AVLKILPKRALLLITLIFNAILRVQYFPKKWKSARISMILKPGKPEQDPSS
FT                 YRPISLLPSLSKVMERLIASRLIIHLEDNDTIPMHQFGFRAGHSTIEQLHR
FT                 VVNHILKAYDHKEYCNGIFLDIQQAFDRVWIPGLLAKVKTALPANLFELIR
FT                 SFLTNREFCVQSRDATSVNVAIAAGVPQGSVLGPILYSIYTADIPKPSYYE
FT                 MTYDNSKMLLASFADDVCFLSSSNSETESSQMLQTYLNEFEKWAMANNIKI
FT                 NESKCVNVCFTLRRKTTPAVHINNVDIEQATKAKYLGLTLDKRLTFRDHIA
FT                 RVVKMCNLKRNQLFWMLNKKSKLPLRCKRQIYQQIIAPTWRYGIQIWGVAA
FT                 ASHRKRFQTVQNKTLRQITGCDWFVSGQTLHNDLNLSLVEDQISFFSSRYN
FT                 DRLTAHRNRLARRLQGAIPIRRLKRRHFGLLLR"
XX
SQ   Sequence 2392 BP; 797 A; 571 C; 454 G; 567 T; 3 other;
     ccaacatact atccaagcgc wktaaatcga agaccatcct gtttagackt tgcaatctat        60
     cgcaacattc cacacgacaa gctaaacatc agagacagct gggaccttga atcggaccac       120
     ctgtctctca tcactacatt aaaaacagaa gccacacaat gcactcaacg taggcaactt       180
     cttagcaaac acacaaatgt agctgttttc aaggaagaac tatgtagatc gatacgcctt       240
     aacattaaga tcaactctgc tgctgaaatt gacgacgcgg tagacctctt cactaccaat       300
     gtgacaaatg cggcgaggag tgcaaacatg cacactgtaa ataatcatag cagagccctc       360
     atacgccact cgaatagatt tgatccaacc attgcagaga tgctagtccg taagagagca       420
     ctgagaagac gttatattcg aacgcacagt cctgaggata aagctcaatg gcatagatgc       480
     gccagagagc ttcacgttgc catggctgaa ttgaaaaatg cgcaattcga acatatgcta       540
     accaatatgg attattctaa tgattccact tttaatatgt ggtcctttac caaaaaagta       600
     aaaagaatgc cacagaaagt tacgcctctg aagaacagca atggtaactg gtgtcgctcc       660
     ttagaagagc aagtacaaac atttgcggaa caccttggcg acagattcac tgcgtttaat       720
     ttcgcatccg agggggatat caacagtata aacgaagtac tacagcgccc attccagatg       780
     tcacctccaa taagacctat ccgtctggaa gaagtctcaa acatgatacg taccctcaaa       840
     agacgaaagg cgccaggtca cgacctaata agcaacgcag tacttaaaat ccttcccaag       900
     agagcactat tacttatcac attgatattc aatgcgatac ttagagtgca atactttccc       960
     aaaaaatgga agagtgctag aatcagtatg attctaaagc cagggaagcc ggaacaggat      1020
     ccaagctcct accggcctat cagtctcctg ccctccttat cgaaggtaat ggaaaggctg      1080
     atagcttccc gacttataat acatctagaa gacaatgata ctatcccaat gcaccaattc      1140
     ggattcagag ctggccacag tacgattgag caactgcacc gtgtagtcaa tcatatcctg      1200
     aaggcctatg accataaaga atactgcaac ggaatcttcc tcgacattca acaggcattt      1260
     gatagagttt ggatcccggg actactagcc aaagtcaaaa cagcgctgcc agccaacctg      1320
     tttgagctca tcagatcgtt tctcacaaac agagagtttt gcgtccagtc cagagacgca      1380
     acctctgtaa atgttgccat tgcagctggc gtacctcaag gaagcgtctt aggaccgata      1440
     ctttactcca tctatacagc agacatcccc aagccaagct attatgaaat gacctatgac      1500
     aacagcaaaa tgctgctggc cagcttcgct gacgacgtct gctttctcag ctcctcgaac      1560
     agtgagaccg agtcgtcaca aatgctgcaa acttatctca acgaattcga gaaatgggcc      1620
     atggcgaaca acatcaaaat taacgaaagc aaatgcgtaa acgtttgctt tacgttacgc      1680
     cgtaaaacaa ctcctgcggt acacattaat aatgtggaca tagagcaagc aactaaggcg      1740
     aaatacctag gcctcacact ggacaaacgc ctaaccttcc gagatcatat tgccagagtc      1800
     gtcaaaatgt gcaacctaaa gcgtaaccaa ctattctgga tgctaaataa gaaaagcaaa      1860
     ctacctttaa gatgcaagcg tcagatttat cagcaaatta tcgcacctac ttggagatac      1920
     ggcatccaaa tttggggagt ggcggctgcg tcccaccgaa aacgattcca aaccgtccag      1980
     aacaaaacat taagacaaat cactggctgt gactggttcg ttagcggcca aacgcttcac      2040
     aatgatttaa acctgagcct tgttgaagac caaatctcgt tcttctcaag cagatacaac      2100
     gaccgactaa ctgcccaccg taatcgtctc gcccggagat tacagggggc tatcccaatt      2160
     cgcaggctca aaagaagaca ttttgggctg cttctaagat gatagtatga atatattatt      2220
     tacctgaaac ctcactactc gaaatttgac ctattcctat atattaagat gaaaacaaat      2280
     tatattttat aattaagaga ttatttactt aagacaacat ttaggttaaa ggctttaatt      2340
     gacctgttcc tgaataatat taaataaaga tgttaattaa tttaaaaaaa aa              2392
//
ID   Jockey-4_Hmel repbase;    DNA;    INV; 4424 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4424
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1490..4174
FT                 /product="Jockey-4_Hmel_1p"
FT                 /translation="NSYNHTQKMIRKLKIMAWNCNGLLKQQNELQVVLDIE
FT                 NIDLCLVSETHFTKQSYIHLRGYKLYHALHPDNKSRGGSAVIVRDRIKHQE
FT                 INKCEEPDIQSVAIQIETKRYSLTVAAIYXPPRHVIKXEKYVAFLQTLGDR
FT                 FVLGGDFNAKNTYWGSRLSNTKGRELMSAVREEKCDXISTGSPTYWPTDPN
FT                 KXPDLIDFFVFKNISPNYLRIEQSYDMSXDHSAIYLEINENISXLDKTSTL
FT                 TNKHTDWEXFRINLDSKXNLKIALKTPEQLNMEVDNFVKIIQKXAWEXTPY
FT                 IKKRQVKNCYPREITMLIQEKRHQRKVWHQSRSPRDKNKLNYLTKKLKRQI
FT                 QRYNSXSTXCNLQSLTNDRSTDYSLWKVTKNLKRPITQIPPLKMGDGKWAV
FT                 SNEQKAKAFAEYLENIFKPNEXNENQDPVPLNSCDESQDIKLVSPREVWRE
FT                 IKQKINRKKSPGFDLISGDIIHNLSRKAIVKLTNLINAAFRLKCVPDLWKV
FT                 AEVIMIAKPGKPPQEITSYRPISLLPIMSKLFEKLFLKRLKPILESKKLIP
FT                 DHQFGFREQHSTIDQVHRITNLIEKTLENKEVCTTIFLDVAQAFDKVWHEG
FT                 LLLKLKRVLPIEYVDLIKSYLLNRAFRIRQQNYFSDIKEIKAGVPQGSVLG
FT                 PVLYLLYTYDIPQLENNTIATFADDTAIMAVGKTHAEAAKKVQEAMNKIHN
FT                 WTKXWKIKLNKTKSVHINFTNKRDEYHPIFINDQIIPYQNTAKYLGMTLDA
FT                 KLRWKAHVKKKKEELEMRYNKMYWLLGRNSTLAVQNKILLYKQVLMPVWTY
FT                 GIQLWGCTXKSNIDIIQRFQNKVLRAIVSAPWYIRNDDLHRDLXIEFVDKV
FT                 IKKYAEAHEHRLHHHVNVEAIQLLDNTDIVRRLKRIKPFELV"
XX
SQ   Sequence 4424 BP; 1752 A; 810 C; 788 G; 1038 T; 36 other;
     cttahcagtg atcgttcgat tttcactaag aatagccgtg tcaaacgcat acgcgagcac        60
     ctacggtgca aagtgctaac gcagcacaac aaagccgtcg aggcggccgg actgcgatta       120
     tgacctagat aattattgct caaacgacaa atcatattgt taaggcgaag ttattactag       180
     cctaaacaat gagtacaccg tcgaaagatc gaataatcct aacaacggaa ttggaacata       240
     cgttatatgc ccgacttaaa gaatttcaat gtcaccaccg agaggaaaag gaagagcgaa       300
     taaaactaca agatctagta gaagatctta aaaaacaaat agagattcta cagcaacagc       360
     tacaatgtgt tgcagaaaaa ccaatgcagg ctccatcaac atcaatggat actgcgccac       420
     aacagacgga atacgagact gatgaagaag aactggctaa agaaactgag tggattaggg       480
     taaagactag aaaaaaaaga aaattgaacg cgtcacctga gctatcactc aaaaataaaa       540
     taaaagaaaa tgtcagaaaa atcaccccac cacctcctat cgtagtagac ggcgtggaaa       600
     attaccaaaa tttttatgac tttctgtcta tagaacatac cgctggcact ttcaccgtta       660
     agatgttgaa tggcggaagt gtcaaaataa atgcttgcga tggtgaaata tatcgctcca       720
     ttacaaagaa gttgacagag aataattgtc tctggcactc ttatgaaaat aaacaggaaa       780
     gacctattag agtaatagta aagaaattac cctttacctg caagcctgat agaattgttg       840
     aagatcttaa gattaaaggt ttcaaaatac aggatgcagt aaacaaactg agttggaaaa       900
     ctaaggagcc gctcaacatg ttcactctta ctttcagcaa tgaagaagaa attaaaagga       960
     tccatgaaat aaaacatatc ctaggatgcg ctattgaaat acaacccctc cgatctacaa      1020
     aactgattcc ccagtgtaaa agatgccagg tttatggaca tacacaaaag tactgtgcca      1080
     aagagcctag gtgcgtcaag tgtactggta agcattttac caaagactgt acaaaaccat      1140
     ctacagaaaa accaaaatgt gtacactgcg gtgaaccaca tcctgctaat tacagaggct      1200
     gcacgatcgc caaagaaatg caaaaaatgc gtaataaaac attaaaaaag ccttcgcctg      1260
     tgcaacaaca gcaagagtcg aaagcaagag agcttactac aagcaaagca aataacataa      1320
     cgaccggttt aaataaaaaa ttgtcttttg cccaagctac tagaggaaaa cccatagtaa      1380
     cacagagtga aggcgaacaa aacaacccaa aaaaggacaa actggatgaa atcttgaagc      1440
     tcatgatcaa cttcgatgag cgtttaaaag agatcgaaaa tagcactaaa acagctataa      1500
     ccatacacaa aaaatgatta gaaaacttaa aataatggct tggaactgca atggactatt      1560
     aaaacaacaa aacgaactgc aagtagtcct agatatagaa aatatagacc tgtgtctcgt      1620
     atcagaaaca cattttacca aacaatctta catacatctt agaggttaca aactctacca      1680
     tgcactacac ccagataata aaagtagagg tggcagtgca gttatcgtaa gggaccgtat      1740
     caaacatcag gaaataaata aatgtgaaga accagacatc caatctgtgg caattcaaat      1800
     agagacaaaa cgatattcac tcacggtagc agcaatttac trtccaccaa gacacgtrat      1860
     taaaaragaa aagtacgtgg cstttcttca aactttagga gataggttcg tacttggcgg      1920
     tgattttaat gccaaaaata catactgggg ctccagacta agtaatacaa aaggaagaga      1980
     gctaatgagt gcagtaagag aagagaaatg tgacgwaatc tcaacaggat ctcctactta      2040
     ctggcccact gacccgaaca arktwcctga cttgatcgat ttttttgttt ttaaaaayat      2100
     atcgccaaat tacctacgaa ttgaacaaag ctatgatatg agcycagatc actctgcaat      2160
     atatttagaa ataaatgaaa atatttcacr cttggataaa acctcaacac taacgaacaa      2220
     gcacacagat tgggagayct tcagaataaa cytggacagc aaaatraacc taaaaatagc      2280
     gctgaagact ccagaacaac taaatatgga agtcgataac tttgttaaga ttatacagaa      2340
     gtrtgcatgg gaaartacac cgtatattaa aaagagacaa gtgaaaaatt gctaycctag      2400
     agaaatcaca atgcttattc aggaaaagcg ccatcagcgt aaggtatggc atcaatctag      2460
     atccccgaga gataagaaca aattgaatta tctcacaaaa aaactaaaac ggcaaataca      2520
     aagatacaac agtkattcaa cawactgtaa cctacaaagt ctaactaacg aycgaagtac      2580
     agactattcc ctctggaaag ttactaagaa cttgaaacga cctattaccc agattccacc      2640
     attaaaaatg ggagacggaa aatgggccgt aagtaatgag caaaaagcta aagcattcgc      2700
     agaatatcta gaaaatatct ttaagccgaa cgaagawaat gaaaaccagg atcctgttcc      2760
     attaaattcy tgtgatgaaa gtcaagacat aaaactggtt tcacctagag aagtctggcg      2820
     tgaaataaaa caaaaaatta accggaaaaa atctcctgga tttgatttaa tctcaggaga      2880
     tataatacat aatctatcaa gaaaagctat agttaaacta acgaacttaa ttaatgctgc      2940
     atttagactt aaatgtgtgc cagatctatg gaaagtagct gaagtaataa tgatagcaaa      3000
     gccggggaaa ccaccccaag agataacatc ttacagacca atctcacttc tacctattat      3060
     gtcaaagcta tttgaaaaat tgtttttaaa aaggctcaag ccaatcctgg agagtaagaa      3120
     actcattcca gatcatcaat ttggtttcag agaacaacac tcaaccattg atcaagttca      3180
     tagaataaca aacctcattg agaaaacatt ggaaaataaa gaagtctgta ctactatctt      3240
     tcttgacgtt gcacaagctt ttgataaagt atggcatgaa ggtttattat tgaaactaaa      3300
     aagagtgttg cccattgaat atgtagattt aattaaatca tacttattaa atagggcgtt      3360
     tagaataaga caacaaaatt atttttctga tatcaaagaa atcaaagcag gggtaccaca      3420
     aggaagtgtg ttgggtccgg ttctctacct actatatacc tatgatatcc ctcagctaga      3480
     aaataatact atcgcaactt ttgccgatga cactgccata atggcagtag gaaaaactca      3540
     tgcagaagca gccaaaaaag ttcaagaagc tatgaacaaa attcacaatt ggacaaaaca      3600
     htggaaaatt aaattaaata aaacaaagtc ggttcatatt aayttyacta acaaaagaga      3660
     tgaatatcac cccatattca ttaatgacca aataataccw tatcaaaata cagcaaagta      3720
     cttgggcatg acgctggatg ctaaactacg ctggaaagct catgttaaga agaaaaaaga      3780
     ggarttagaa atgcgataca ataagatgta ctggctgctt ggaagaaatt ctacyctagc      3840
     agttcagaac aagatcttac tatacaaaca agtcctcatg ccagtatgga cctacgggat      3900
     acagctgtgg ggctgtacca raaaaagtaa catagatatc atacagcgwt tccagaataa      3960
     agtacttaga gcaatagtta gtgcyccttg gtatattcga aaygacgacc tccacaggga      4020
     cctcartata gagttcgttg ataaagtcat taagaaatat gcagaagctc acgaacacag      4080
     acttcatcat catgtgaacg tcgaggcaat ccagctcctc gacaacacgg acatagtgag      4140
     aagactcaaa agaattaaac ctttcgagtt agtgtagtgc ataacagttc agtggtgaaa      4200
     gtgtaatcgt aaatataaag aacacattaa ctaagtgtct tccccttaaa tagagacaat      4260
     aagaaaagtg ccratggaca caatcttagy atagtattgt ttattataaa agtaggttaa      4320
     aattaaatta ctcattagtc aacgtaatgg ctagatcgta atataatatt attagtgtaa      4380
     gtaagtttgt atacgctaat aataaataaa taaaaaaaaa aaaa                       4424
//
ID   Jockey-4_HMM repbase;    DNA;    INV; 4884 BP.
XX
AC   .
XX
DT   20-FEB-2013 (Rel. 19.10, Created)
DT   20-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4884
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2800-2800 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..1690
FT                 /product="Jockey-4_HMM_1p"
FT                 /note="Zinc-finger motifs."
FT                 /translation="AQGQNTRANGAASPVPLSPAPATAAEREEPETPRAPR
FT                 VKPPPPIYMQEKHKWDKVSDWLNSQNISYSTARLTQVGIKIQVATSSEHRQ
FT                 LTSFLREYQIGYHSYALEDERQLRVVLKGIPKELDVELVFSDLRNKGFPVR
FT                 QAHRLYNSRTKAKFDIVLVVLDLTKEGKEIFNLRSVCSLTGIRVEPPHSRG
FT                 LIGQCHRCQLYGHSAKNCFARPRCVKCLDDHAAADCPRKAPDPAVPPSCVL
FT                 CQTQGHPANYRGCSRAPRRRTRRGGKNRGANXKIXEPAPKYVPAPQPKENA
FT                 WLKPAPPPVVARAAAPVKPPTVKVGAPNSTPAPSRAALSNGSDFALVLNLV
FT                 RSLDFNEIKIFANKLRNTNSPDDRAQAIIEHIDLLEAIAGSISK"
FT   CDS           1702..4596
FT                 /product="Jockey-4_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAVINRFTPLPADSQLARIKPRALSIATFNANGVKRQ
FT                 RESMSAFAHTHQLDIFCIQESFLKPGVRSPSIANYRFVRNDRATKGGGTMI
FT                 YYKKNLHCIPLDPPSLEAAEASVCQVFLTGHQPLIIASVYRSGNRQLLESD
FT                 ILSLLSMGDSVLLIGDLNCKHKNWNSSMTHTDGRRLLEFTSKYNAFVIGPP
FT                 SPTRLSAHGTGEVLDIAILSNVGLCQHSIETIPDLDSDHRPVILKLGEVRP
FT                 SGPPTKTVIDWRKFGKLLRSNESPLKELIPGIADSAELAIDAANKFTEYIQ
FT                 NTIQSCSKEVPNLPEGRFEISEKLRRLIRRRNKAMRRHDAYPTDDNRREFN
FT                 RLKRRVRFEFELLRGESWDKKLEGLAPSHQAFWALSRVFRVDCLSTMPPLI
FT                 RPDLSVAADDTEKAECLADSLEAQCTPSSQPCDPSHIARVDSAVAEWALTP
FT                 PQGESLRPTSEDEVKDIIKNLKDRKAPGPDKLSNRTLKSLPAQFLSLLVII
FT                 FNSLLMSCTFPDEWKEAIVIGIPKPNKPRNMPSSYRPISLLSCLGKIYERI
FT                 ILIRLSEVVEAKSLLIKEQFGFRKKHSAIHQVHRVVEHIAQYKVKISYRRH
FT                 TAAIFLDVAKAFDKVWHNGLIFKLRRSGLPDCLVRILQDFLSNRYFRYKVE
FT                 GTLSSPRLLRAGVPQGSTLSPMLYALYTRDIPRTRDVHLAMYADDTALYTS
FT                 SRNTRIIADRLQKAARVLGVWFRQWRIEVNPEKSKAILFPRARSEQISTIY
FT                 LLDKAIPWEKEVKYLGVTLDSKLSFKPHVTKACNKAKFILNRLYYLINKRS
FT                 KMSLRNKLTLYKTCIRPVLSYACVAFAHTKLDPMQKVQNKFLRIASGCPWF
FT                 VRNVDLHRDFELESIHEHCKRLAKRYFERAGSHANPLIVNACDYIPNALPR
FT                 RRRPRSVLLDSDDAITIANAPYVGRKHTTHTRHKHRRRRNRRRSPAYSTAR
FT                 SRLGAVGPSG"
XX
SQ   Sequence 4884 BP; 1269 A; 1406 C; 1120 G; 1086 T; 3 other;
     gataggacta gagagtctac tcttctgtga gtacttacac agtttttata gttaggcact        60
     caccttccgt tcaccgacgg aagactagtt tttgccaaag tgatagttta gacttaaatt       120
     acacaccctc ccccaccgta aggtgagggg aatgacataa tggccgaaaa ggaggatatc       180
     ctccgctacc tagaagccca ccatagtgag gcttaccgcg cggcggtcaa ttatgcgcgc       240
     aaccgcaacg cgagcccgag cccgcccgac gacggcccga gtgccgatgt tgaccaagta       300
     gagccgatgc tctcggacgg gccgagcgac tccgaagtcg ccccgccgag ggaacttctc       360
     cgcgcccccc gcgcccccgt tcaccgcaac cgtccggtaa cgaaatggag gcgaacaact       420
     gttcctcctc cgatgactca gacgacggtt tcgagaccgt cgtatctcgt tcggccaaac       480
     gtaaggccaa ggcccctaag gcccccccgc cgcccaagaa ggcaaataag cccaagggca       540
     aaacacccgt gcgaatggcg ccgcgtcgcc ggtccccctc tcccctgccc ccgcaactgc       600
     ggccgagcgg gaagagcccg agaccccccg cgccccccgt gtcaagcctc cgccgcccat       660
     ttacatgcag gaaaaacaca aatgggacaa agtttctgat tggcttaaca gccaaaatat       720
     ctcctattcc accgcgcgcc taacgcaggt aggaatcaaa atacaagtag ccacttcgtc       780
     ggagcaccga caactaacct cattccttag ggaatatcaa ataggatacc actcgtacgc       840
     cctagaggac gagcgccaat tgcgcgtagt tctaaagggc attccgaaag aattagacgt       900
     agagcttgtt ttctccgatc tccggaataa gggtttcccc gtgcgccaag cgcatcggct       960
     ttacaattct cgcactaaag cgaaatttga tatagtcctt gtcgtcctgg acctcackaa      1020
     agagggaaag gaaattttca acctgaggtc ggtgtgctct ctcaccggca tcagggtcga      1080
     acccccacat tcgaggggac tcatagggca gtgtcatcgc tgccaactat acggccactc      1140
     ggccaaaaat tgtttcgcgc ggcctaggtg cgttaagtgc ctagacgacc acgccgctgc      1200
     ggattgtccc cgcaaagctc ccgatcccgc cgtccctccc agctgtgtgc tctgtcagac      1260
     gcagggtcat cccgcgaact atcgcggatg ctcccgcgcg ccgcgcagac gcacccggcg      1320
     cggaggcaaa aacagggggg ctaatckcaa aatagwggag ccggctccta aatacgtgcc      1380
     cgccccccag cctaaggaga acgcgtggct taaacccgcg ccacctccgg tagtagcccg      1440
     cgctgcggcg ccggtcaagc cgccgaccgt caaggtcggg gctcccaact ccacccctgc      1500
     gccctcacgc gccgccctct ctaatggtag cgatttcgca ctagtgctaa acttagttag      1560
     atctcttgac ttcaacgaaa tcaaaatttt cgcgaataaa ttaaggaata cgaatagtcc      1620
     agacgaccgc gcccaagcga taatcgagca tatcgatctc ctggaagcca tcgcgggctc      1680
     catatctaaa taacttttcc aatggcggtc atcaatagat tcactccatt acccgctgac      1740
     tcgcaactcg cgcgtattaa gccaagagcc ctgtctatag cgacttttaa cgctaatggt      1800
     gtcaaacgtc aacgtgagtc aatgagtgcc ttcgctcaca ctcaccaatt agatatcttt      1860
     tgtatacagg agtcttttct taagcccggg gttcgcagtc ccagcattgc gaactacagg      1920
     tttgtaagga atgatagggc caccaaaggc ggcggcacta tgatttatta caaaaagaat      1980
     ttacactgta taccgctcga ccctccgtct cttgaagccg ccgaggcgtc ggtgtgccag      2040
     gtattcctca caggccatca gccattgatt attgcctccg tttatcgttc gggaaatagg      2100
     caactattag aaagcgacat tttatcgcta cttagtatgg gtgactcggt ccttctgatc      2160
     ggggatctca attgtaaaca taaaaattgg aattcgtcga tgactcatac cgacggtagg      2220
     agactccttg aattcactag taaatataat gctttcgtta ttggcccgcc ttcacccacc      2280
     cgccttagtg cccacggcac aggcgaggtt ctcgacatag cgattctatc gaatgtaggc      2340
     ttatgtcaac attcaataga aacaattccc gacctcgatt cggaccaccg tcctgtcatt      2400
     ctcaaattag gcgaggtgcg cccctcaggc ccacccacta aaacagtaat cgactggagg      2460
     aaatttggaa agctcctccg ttcgaatgaa tcccctttaa aggaattaat acctggcatc      2520
     gccgactccg cggagttagc aatagacgcg gcgaataaat ttaccgaata tattcaaaac      2580
     acaatccaga gctgctcgaa agaggtacca aacctacccg aaggtaggtt tgaaatctca      2640
     gaaaagctcc gacgattgat tagacgcaga aacaaagcaa tgagacgaca cgacgcatac      2700
     ccgactgacg ataatcgtag ggaatttaat agattaaaga ggagagttcg attcgagttc      2760
     gaacttctgc gcggggagtc gtgggataaa aagctcgagg ggctcgctcc atcgcaccag      2820
     gcattctggg cgctgtcgcg tgtttttaga gtcgattgtc tctcgactat gcctcctctc      2880
     attaggccag atttatcagt tgccgccgat gacaccgaaa aagcggaatg tctcgctgac      2940
     agtttagagg ctcaatgtac tccgagtagt cagccctgcg acccgagcca cattgcgcgc      3000
     gtggattccg cggtcgcaga atgggcgctg acgcccccgc aaggggaatc gctccgcccg      3060
     acctcggaag acgaggtcaa agacatcatc aaaaatctca aagataggaa ggccccgggg      3120
     cccgataaat tgtctaatag aacacttaag tcccttccgg ctcagttctt atctctattg      3180
     gtcattattt ttaattccct tctcatgtcg tgcaccttcc ccgacgagtg gaaggaagcc      3240
     attgtcatag gtataccgaa acctaacaag ccgcggaata tgccctctag ctatagacct      3300
     atcagccttc tcagctgctt aggaaaaatt tatgagagaa tcattctcat tagactctcc      3360
     gaggtggtag aggccaaatc tctgctcatt aaagagcaat tcggtttcag aaagaaacat      3420
     tccgccatcc accaagtcca tcgcgtggta gagcacatag cccaatataa agtaaaaatt      3480
     tcctaccgca gacatactgc cgccattttt ctcgacgtag cgaaagcctt tgacaaggtc      3540
     tggcataacg gcttaatttt caagctgcgg cgctctggct tgccagactg tctcgtgcgc      3600
     atcctgcagg attttctgtc aaatagatac ttccgctata aagtagaagg aactctctcc      3660
     tccccccgcc tcctccgcgc aggcgtcccc cagggttcaa ccctctctcc tatgttatac      3720
     gcgctgtaca caagagacat acctcgtacc agggatgtac acttggctat gtacgccgat      3780
     gataccgccc tatacacctc ttcgcgtaac acacgcataa tagccgatcg acttcagaaa      3840
     gcggcccgcg tacttggtgt gtggttccgc caatggagaa tcgaggttaa tccagagaag      3900
     agtaaagcga tactcttccc tcgcgctcgt tcagagcaaa tctctaccat ctatctatta      3960
     gataaagcca ttccctggga aaaagaggtc aaatatctag gtgtcacatt agactctaaa      4020
     ctctccttca aaccccacgt cacgaaagct tgcaacaaag ctaaattcat tcttaataga      4080
     ttatactatc tcataaacaa gcgtagtaaa atgtcactta gaaataagct gacactatac      4140
     aaaacttgta taagacccgt cctctcttat gcttgtgtag cgttcgcgca cactaagcta      4200
     gatcccatgc aaaaggtaca aaataaattc ttacgtatcg catcaggttg tccctggttc      4260
     gtgcgtaacg tcgacctaca tagagacttt gaactggaat cgattcacga gcattgcaaa      4320
     cgtttagcga agcgctactt tgagcgcgca ggctcgcacg cgaatcccct catcgttaat      4380
     gcgtgtgatt acatccctaa cgcactccct agacgtagac gcccgcgcag cgtcctttta      4440
     gactccgatg acgccattac catagcgaat gccccgtatg taggtaggaa acacactact      4500
     cacacacgac acaaacaccg tcgtcgacgg aatcgacgac gaagtccagc ttattcaacg      4560
     gctcgatcgc gtctcggcgc ggtcgggccc agcggttagg gaccgttagc tcccttagag      4620
     tagtctaatt tgtccccagt cgcgacttca tgtcgcggct ggtttgctta gcataggtga      4680
     aatcccagtc cgctcgacgg ccgcaagccg aggttcgagt cccgcagggg gcgcccttac      4740
     agtcgtcgac ttcctcacag gcagccactt agtgcttgca tttcttcagg gacagagtac      4800
     cctcttccct acccaaccgg tgtcgctgta aaagccaata gggctaacag cattatccac      4860
     atgttcgaaa aaaaaaaaaa aaaa                                             4884
//
ID   Jockey-4_LMi repbase;    DNA;    INV; 3507 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3507
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3150-3150 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2078..3283
FT                 /product="Jockey-4_LMi_1p"
FT                 /translation="GSPNTKTRKGHYTAIEPQTHKSSEWHGENXGKMLQTR
FT                 ILEPLVEDGTIRAEQYGFQRKLSAELQLLRLAEHITKNLNVTKATATVFLD
FT                 VEKAYDKVWRDLLIRKLHEQTTIPDCYVKLIASYLRDRKMMVTVDGQSSDT
FT                 RPALAGLPQGSVLSPILFNVYANDIPTVEGVQIAQFADDTAFLTSGRHVQA
FT                 NIRRLQSQLDAMEDWCKTNKVLLNPAKTTAIYFTKKRPRLPTNLKLYGQNI
FT                 PWGDTVTYLGVTLDKHFFLHKHVDGLRNKAYAMAKSLMPFFLSTDLSTGAK
FT                 LRLYKATVLSKMLYGSSVWGLASATQIQRLQVIQNKTLRWILRANRYTRNT
FT                 DIHEALHMDTIMGAVQKRATKIHRKIDQLRDTVHNIRTLGRTMPLPWHRYK
FT                 VPRALTNR"
XX
SQ   Sequence 3507 BP; 1115 A; 908 C; 816 G; 667 T; 1 other;
     ctgtctgcgc cgcaccctgc caagagcgaa gaaatttgtg ccgttcgcta catcctttct        60
     acagaagtgc gagtggatta tcgctcgcga acgagcacac aatgcaaaaa gtgtcagcct       120
     ggacccacac gaccaactat tgttggctac cggccagatg tgttaagtgt ggggatgtgc       180
     atcccagcca gatgcacact ggcaaaacgc caaggaccac acgcagcctc ctggaaagga       240
     tgtgcggagt tccagaagag ctgaagaaat aaggccgcag cgacaaccaa acaacagagg       300
     aggggaccag caccgacaac cgcgtcaaac tggtcgtggc ggacacacac gaccctcgac       360
     tactcacaag agcagaccac gggaccagca ccgcagcgca tgagacatat gcttttgcat       420
     tacgaggccc gacgagacca cagtaggtac cgaaagataa ggacgcagat gcagcattaa       480
     cagaagtaac aaggtgttaa agtttctcag cagtcagaac ttcctcacca agcttgcgtc       540
     actgccggca agaggatgct ggctgctaag gacaaacttt caaaaattgt aatactggtg       600
     gaaacactag cgttactgga agggtcggag taacaccatg gggacccaaa cgagagacct       660
     gaaaatctgc atctggaatg ctactggagt agaaggaaga aggatgaatt acaggacttc       720
     atcgccaggc atagggtcga catggtgctg ctgtcagaaa cacgtcgacc acaccaaccc       780
     ttcaagttgc ggaacatgat aggctaccgg accgacagac cagcgagagg tggtgggact       840
     gccatcttcc tccgccactc aatcacacat cgccacgtcg acttaccaca actccaacag       900
     ttggaagcga cagcaatttc catttggact gtctaggcga ggtcacactg gtggcaacat       960
     atcttcgacc cagggcacaa ctgataaggc aagacctcga gaacgttctt gcatcaaacg      1020
     ggaaaacatt catcgggggt gattggaatg ccaagcaccc gacttggaat tcccgtgtca      1080
     ccaacccaag agggatacag ttgcatcaaa tggaacaaga atggatttgg aagtgtgggg      1140
     acctacagag ccgactcata cgcctacagt acaaaccaga tgtactagat attgccatta      1200
     cgcaaggtct cgggatcgac ccacgactgg tcacaatcaa tgacccatca tccaaccacg      1260
     atccgtgatg gcagtgtgcc acggacagga tacgtacgca agaagaacgt tccaagaaaa      1320
     taattgggac cagttcaaga ggttcctgaa caacaatgtt ccgccaacgt taccagtaga      1380
     actcctgcac aaatcgacta tgctctggaa ctcctcatga agaaagttcg gaaagcagta      1440
     gtcgctcatc acaattacag aagatactac caactgaacc acccccccta ctggaggaat      1500
     taaggatcca aaagaaccgg ttcaggatta tggcaacgca ccagaaatcc agcgtacggc      1560
     ggcagaagca tagactggaa cggcaataag gcgatgcctc gcccttgcga gtggaaggtc      1620
     gagaagtgga agacaaacgt ctactttctt ctccaaacga aagatgaatg gaggctgatt      1680
     aagaactaag atcggaacca caccgaagag gccgctcgac accacatgga ctaacgaaga      1740
     ccccctgaca aggcggaaac gtttctctca acatacgaac aacagaccac actactaggg      1800
     agcacctgaa cctgccaacg agaacatgaa gttagcatga tacgcctagt cagacaaaat      1860
     ccctcgcctg attcacgccg ggcccgccgc gattcacgac gcccagcgaa gttcgcagta      1920
     taatcaacaa actccatcct aataaggccc tgggggcaga caaagtcagt aacttacatc      1980
     taaagaatct cccaaggaaa ccactagtcc tcctcacaag gatctttaat ggatgcatgg      2040
     taacgaaata cttccccaca gcatggaaaa tcgctaaggt agtcccaata ccaaaacccg      2100
     gaaaggacac tacacagcca tcgaaccaca gacccataag tcttctgagt ggcatgggga      2160
     aaacawtgga aagatgttgc agacacggat actggaaccc ttggtggaag acggaacgat      2220
     acgagcggaa cagtacggct tccaacgtaa actgtcagct gaattacaac tcttaagact      2280
     ggccgagcac atcaccaaga atctgaacgt gaccaaggcg actgcaacag tcttcctgga      2340
     tgttgaaaag gcttatgata aagtctggag agaccttctc attaggaaac tccacgagca      2400
     gacaaccatc ccagactgct acgtgaagct aattgcgagt tacctgcgtg accggaagat      2460
     gatggtgaca gtggacggcc aatcttcgga cactcgacct gcattagccg gactacctca      2520
     aggttcggtg ctctctccca tcctgtttaa cgtgtatgca aacgacatac ctacggtgga      2580
     aggcgtacag atagcacaat tcgctgacga tacagcgttc ctcaccagcg gacgacacgt      2640
     tcaagccaac atcagacgtc tccaaagtca actggatgca atggaggact ggtgcaaaac      2700
     caacaaagtg ctactgaatc cggcaaaaac aactgccatc tactttacta agaagcgtcc      2760
     acgactgcca accaacctga aactttacgg acaaaacata ccatggggag atacggtgac      2820
     atatctaggg gtcaccttag ataagcactt cttccttcat aaacacgtcg acggcttgcg      2880
     gaataaagcg tacgcaatgg cgaagagcct aatgcccttc ttcttgagca ctgacctgag      2940
     tactggcgcc aaattacgcc tgtacaaagc cacggttcta tcgaagatgc tttatggcag      3000
     ctcggtctgg ggactggcca gtgctaccca aattcaacgg ctgcaggtga tacagaacaa      3060
     aaccttacga tggatcctca gggcaaacag gtacacacgg aataccgaca tccatgaggc      3120
     gcttcacatg gatactatca tgggagccgt ccaaaaaaga gcgacgaaga tccaccgcaa      3180
     gattgaccaa ctacgggata ccgtacacaa catccgcaca ttggggagga caatgccact      3240
     tccatggcat agatacaaag tgccacgggc cttgactaat cgataaagtc ttaaattata      3300
     tgtaaatacc aagtttaatt gaaataatgt aattaataca tcgagagggg taccttacgg      3360
     accaaaataa aggcccttac aagttaaccc ctaaagttta ttgtaataaa taaagttata      3420
     gttaaccccc atatcctaaa atgtgaagtg taaatcgtcc atgacgatgg tacttcagtc      3480
     actttgtacc aacaaaaaaa aaaaaaa                                          3507
//
ID   Jockey-4_RPr repbase;    DNA;    INV; 3113 BP.
XX
AC   .
XX
DT   07-MAR-2013 (Rel. 20.10, Created)
DT   07-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3113
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3469-3469 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(89..235,174..2960)
FT                 /product="Jockey-4_RPr_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="MQKLRGLQRFVQLLLNHPPSLTTSPLSLXHSSPNSSL
FT                 SSLHSSHYSLLWXILLRIQVSHHSTHHTTHFSGNRNHSQTLTLNSNLQQSL
FT                 AILLWNANGLNSHRDELEIFLNDKRIDVALITETHFTGRSNFYITGYKTYR
FT                 TDHPDDTSHGGAAILVRSTLNHHQIPSYQREFXQSTAISLDCQPLGFNLAA
FT                 VYCPPNKAISATDFQSFFHSLGPKFLAGGDYNAKHPQWGCRTSNPRGRTLL
FT                 DVLSLKQCDVLSPDRPTYWPTAQSKLPDILDIFISFNTTSIYKDIYTLTDL
FT                 SSDHSPVLLTLSVVPKPTPSPPTLITGPVDWTLFQTTLANKLNLLTSLKTP
FT                 DEIDNAVQTLTISIQTSISESTRCTSLKNNFRXHNVPIAIRMLIREKRRAR
FT                 AVWQHTRYPSDKLTFNRLTRQLKRELQKHRSLKYDEYVTSLVSDRKSLWTA
FT                 TKRLLRYKFVSSPLRRDDGSWTITDNETATEFKNYLTNVFTPHPDIQDESH
FT                 STDVIADLDIPLPLSLPPKPFTPSDVKHVIKSLPYKKSPGYDLITAQILRN
FT                 LPKKAIVFLTYIYNSVLRTTYFPLTWKFSVIKMIPKPNKPLHLPTSYRPIS
FT                 LLPIMGKILEKLLLKRIYPILESATVIPTHQFGFRQQHSTIHQCHRVVDAI
FT                 ASSLERKQYCCGAFLDVAQAFDRVWHPGLLWKLKSALPSTYYLIILSFLTD
FT                 RFFKISCGSASSDYSLARAGVPQGSILGPLLYTVYTSDLPTDSNTLLCTYA
FT                 DDTAILSSNSDATTASSHLQSHLHKLEPWAKKWRVKFNPQKCEQITFTLRR
FT                 NSCPSVSFNSIPLPSANLVRYLGMYIDKRLTWNPHTKLKRLELNRRNKLLL
FT                 RLIGRQSKLPLEHKRLIYNSVLKPIWTYGLELWGSAKLSNSQKIQSFQSKI
FT                 LRQITNSPFYVSNSTLHNDLKISYVTDESKSKYRKFFDSLPFCTNPLVQNL
FT                 ASTTIPDRPPRRLKRCWPRDQLQ"
XX
SQ   Sequence 3113 BP; 932 A; 868 C; 471 G; 835 T; 7 other;
     ccaagaagct ccgaatttcc tgtgcttcct gctaaasaat ctactcgtga acawcctcta        60
     ccaaccacca ccagcaacag acctacatat gcagaagttg cggggccttc agcgattcgt       120
     ccagctctta ctcaaccatc ccccatctct cacgacctca cctctctcct taayacattc       180
     ttctccgaat tcaagtctct catcactcca ctcatcacac tactcacttc tctggtaaca       240
     gaaatcattc ccaaactctc acgttgaact ctaatcttca gcaatcactc gcaattctcc       300
     tttggaatgc aaatggtttg aactctcaca gagacgaact agagatattt ctaaatgaca       360
     aacgaattga cgttgcactt attaccgaga ctcactttac tggacgatcc aacttttaca       420
     taaccggata caaaacgtac aggactgatc acccagacga cacatctcat ggtggcgcag       480
     ctattttagt cagaagcact ctaaatcatc atcaaattcc ttcctaccag agagaattcm       540
     ttcaatccac ggccatttct ctagactgcc aacctctagg gttcaatcta gcagcagttt       600
     actgccctcc taataaagct atttcagcaa cggactttca atctttcttc cactctctag       660
     ggcctaaatt tcttgctgga ggagattaca acgccaagca tcctcagtgg ggatgtcgta       720
     catccaatcc acggggacgc acactgctgg atgttctttc actgaaacag tgcgatgttc       780
     tatcaccaga ccgaccgaca tactggccta ctgcacagtc caaactacct gacattctgg       840
     acatcttcat ctcttttaat acgacgtcca tttacaaaga catctataca cttactgact       900
     tatcttctga ccacagccct gtactcctta cactcagtgt agtacccaaa cccactcctt       960
     cacctcctac actwatcact gggcctgtag actggactct cttccaaact accttagcaa      1020
     acaaactgaa cctgttaaca tcattaaaaa ccccwgatga aatagataac gcagtacaga      1080
     cacttactat ttccattcaa acttccattt ccgaatccac cagatgcact tcactaaaga      1140
     ataattttcg acmacacaat gtacctattg ccataagaat gctaataaga gagaaacgaa      1200
     gagcccgtgc tgtgtggcaa cacactcgct acccgagtga caagctgacc ttcaaccgac      1260
     tgacgagaca gctgaaacga gagcttcaaa aacacagatc cctgaagtat gacgagtacg      1320
     tgacctctct ggtatctgac cgcaaatctc tttggacagc caccaaacgt cttctcagat      1380
     ataaatttgt ctcctctcct cttagacgtg acgacggatc ttggacaatt accgacaatg      1440
     aaacagcgac agaatttaag aactacttaa ctaacgtatt cactcctcac ccagatattc      1500
     aagacgagtc acacagcact gacgtcatag cagacctaga catccctctc ccactctcgt      1560
     taccaccaaa accattcact ccgtctgacg ttaaacacgt aataaaatcc ctaccgtaca      1620
     aaaaatctcc aggatacgac ttgataacag cacaaattct tcgcaatctt ccaaaaaaag      1680
     caatcgtttt cctaacatac atttacaact cagttctcag gacaacatac tttcccttaa      1740
     cttggaaatt ctctgtaata aaaatgatac cgaaacctaa taaaccttta caccttccaa      1800
     cctcttaccg acctattagt ttgctaccta ttatgggaaa aatattggaa aaacttctac      1860
     ttaaacgcat ctaccctatt ctggaatctg cgactgtaat tccaacacat cagtttggct      1920
     ttcgacaaca gcacagcact attcaccagt gtcacagagt agtagacgcc attgcttcct      1980
     ctctggagcg gaaacaatat tgctgtgggg cctttctcga cgtggctcag gcctttgatc      2040
     gagtctggca cccaggacta ttgtggaagt taaagagtgc tcttccatca acttattact      2100
     tgattatact atcatttctt accgaccgct tctttaagat aagttgtgga tctgcctctt      2160
     ccgactactc tctggcacgg gctggtgtac ctcaaggtag tattctcgga ccgcttctct      2220
     atactgtgta cacatctgac ctaccaactg actcaaacac actgctctgc acttacgctg      2280
     acgatactgc tattctctct tctaactcag acgccactac agcttcctct catctacagt      2340
     ctcatctaca caaactagaa ccctgggcca aaaagtggag agtcaaattc aatcctcaaa      2400
     agtgcgaaca gataactttt actctgcgtc gtaattcttg tccctctgta agtttcaact      2460
     caattcctct tccttctgct aatttagttc gctaccttgg gatgtacatc gacaaaagac      2520
     taacgtggaa tccgcacact aaactgaaaa gacttgaact caaccgacga aacaaattac      2580
     tgctgcgact aattggcaga caatccaaac taccactgga acataaacga ctaatataca      2640
     acagcgtact taaaccgatc tggacttacg gactcgaact gtggggttca gccaaacttt      2700
     ccaattcaca aaaaatacag tccttccaat caaaaattct ccgtcagatt acgaattctc      2760
     cattttatgt ctctaactcc accctccata acgatctcaa aatctcatac gtaactgacg      2820
     aatctaaatc taaatataga aaattctttg actctcttcc attctgtacc aatcctcttg      2880
     ttcaaaatct tgcctccaca acgattccag atcgtcctcc acgacgattg aaacgctgtt      2940
     ggcctcgtga ccagctccag taatgtaagg aactccagcg agagtgttgc cggtgggcag      3000
     cttctctcct caagctgatc cagccatgaa gtcttctttc atcgtattca ctgattgcga      3060
     ttttattctt tgtagattgt gaatagcaaa taaattaaaa aaaaaaaaaa aaa             3113
//
ID   Jockey-5B_HMM repbase;    DNA;    INV; 1746 BP.
XX
AC   .
XX
DT   27-FEB-2013 (Rel. 19.10, Created)
DT   27-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5B_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1746
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2801-2801 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1460
FT                 /product="Jockey-5B_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="AQMEADAALAXASPXRPLPPPPFFTPTAVSKAIKRLK
FT                 LKKAPGPDGVTNGALRHLPPRIVAALTRLFNASLRLGYFPQAWKKGLVIML
FT                 PKARKNPXDPDSYRPITLLSAVGKLLRETVAAAHTAHFQPRNEQFGFRSDH
FT                 STTLQVARVVHFAATAANKKESAAAAFLDVSRAFDRVWHPGLLHKVLRAGI
FT                 PHHVAVILANYLTGRTFSVRVESEISSSHPIAAGVPQGSILSPALYXLYTD
FT                 DIPTHQDATLALYADDIALYTKSXKPXHAAVKLQRALDLLPDWLAEWRLAL
FT                 NIAKTQAISFGSHHKLPPPLSLQGQQVPWSSRATYLGVVIDRRLXMAGQVK
FT                 KAASAAKIALSLLRPLFRSRLPLRTKLSLYKAYVRPHLSYAGPAWYALTSE
FT                 TQKKILQVVQNAALRRVTQAPYFVRNATLQRDLRLESLEDHIGRLASNAYR
FT                 RADASDHLHLRSIAPLHTRPPDAAKRLPRDIIPPSPSXPDS"
XX
SQ   Sequence 1746 BP; 347 A; 646 C; 463 G; 273 T; 17 other;
     acgcccagat ggaggccgac gccgccctcg ccwtagcktc ccccgmacgc cccctgccac        60
     ctcctccctt cttcactccg acggccgtct cgaaggcgat taagagactg aagctgaaga       120
     aggcgcccgg accggacggc gtcaccaatg gcgcgctccg ccatctcccc ccaaggatcg       180
     tcgccgcact gaccaggctc tttaacgcca gtctacgcct gggatacttc ccccaggcgt       240
     ggaaaaaggg cctggtcatt atgctgccca aggcgaggaa gaacccgmgm gacccggaca       300
     gctaccgccc gatcaccctc ctcagcgcgg ttggaaagct cttacgagaa actgttgctg       360
     ccgctcatac ggcgcacttc cagccgcgca acgaacaatt cggkttccgc agcgaccatt       420
     ctaccacgct gcaggtggcc agagtggtgc acttcgcggc cacggccgcc aacaagaagg       480
     agagtgccgc agcagccttc ttagacgtgt cgcgcgcgtt cgaccgcgtg tggcacccgg       540
     ggctgctaca caaggtgcta cgagccggca tcccccatca cgtcgccgta atcctggcga       600
     actatctcac cggcaggacg tttagcgtaa gggtggagag tgagatctcg tccagccacc       660
     ctatcgccgc aggcgtcccc caaggcagca twttatcgcc cgccctatac kccttgtaca       720
     ccgacgacat cccgacgcat caggacgcaa ctctggcgct ctacgcmgat gacattgccc       780
     tstacacgaa gtcgmtcaaa ccccakcacg cagccgtgaa gctccagcgc gccctcgacc       840
     tgctgccgga ctggctggcg gagtggaggc tcgcgctcaa catcgccaag acccaagcga       900
     tcagctttgg gtcccaccac aaactgcctc ctccgctgag cctgcagggc cagcaggtcc       960
     cmtggagcag ccgagccacc tatctgggcg tggtgatcga ccgaagacta amcatggcag      1020
     ggcaagtcaa gaaggcagcc agcgcggcca aaatcgcgct ctccctgttg cgtccactat      1080
     tccgatcgag gctccctctg mgaacgaagt tgtcgctgta caaggcgtac gtcaggccgc      1140
     acctgtccta cgctggcccg gcgtggtacg cgctcaccag cgaaacccaa aagaagatcc      1200
     tgcaggtggt ccaaaacgct gccctccggc gcgttaccca ggctccctac ttcgtcagga      1260
     acgctaccct acagcgtgac ctgcggttag agagtctgga ggatcacatc ggccggctcg      1320
     cgagcaacgc gtatcgccgc gccgatgctt cggaccacct gcacctacgc agcatcgccc      1380
     cgctccacac tcgaccgccg gatgccgcca aacgcctgcc gagggatatc atccccccct      1440
     ccccctcagm ccccgactcc tgagcagccw cctcggtcgc tggtcgccta gctgggcctc      1500
     ccttggggca accaagggtc tcacccggct gggctgaccg cccaggtggc aaacgctcat      1560
     cccccccccc ctacacccca acaagcctcc aatacccagt gcctgcctcg gcagccacaa      1620
     ccccaccggg cctagtgccc actccaacga cgtggccatc gtaatggcca ccgcaagaga      1680
     ccacggtcag agggctgttg cctgcaaccg tttcccagcg ccacggcgcc ggaggaaaag      1740
     aacttc                                                                 1746
//
ID   Jockey-5_BTa repbase;    DNA;    INV; 5385 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5385
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 707-707 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..2163
FT                 /product="Jockey-5_BTa_1p"
FT                 /translation="MSSSHQICKHNVVCYWKDSRFVGCEKCLARGRLALPR
FT                 ASPLKTQTPTPTAMPNAENINPFQKSSILPRSPPGASGENKPENNAKASAQ
FT                 PLPDSVGGSNKGEVETILTTDPESVKGDPALNEKTKLFILQSISAVKSLHD
FT                 ENILAKNFIQEQKALMDKIQAEIKELKLNKSQPQVAGGSKNKGKTFVTVNK
FT                 EIPQQNGGKFGALLLDAETDDDFSSGDWPNYNSDPEYQDQRRTAAKKVKKT
FT                 TKRKRKQDQSSPDSKDASGSGADVQATQDKSNNSKPGDKSNTSNPNDRSPK
FT                 ILPPPPIKVVGIKDYQEIKRLLKEASDKEEYVLKFLGSETWKVNPSNDETF
FT                 RKISEKLNEREVQWYSHSNKNTRNIKVVCKGLPPSIPEDEIVSDLLSKNFK
FT                 IKSAVCMRKRVEKQQKKNEKTIMPMDTDPESATPLQTTPSVTTSENQTTNA
FT                 KPIKEFELIKIPVHQLDFDHSESIENIYKIKAIAHTIVQIEPMKIDNKIVP
FT                 QCRRCQCFSHTHNFCRKNPRCVKCAGKHLSPECPFKGRILNPKCVNCGAIG
FT                 HPASYRGCPFAKEFQVARKKQLQAKKNSPDQKSFPKLGKNITTHAPPKKLD
FT                 RTFAQALSGNTANPATQGAGDSSAALIGVLLQTIETLNAQLRVLTEKVSKL
FT                 EASQKR"
FT   CDS           2175..5063
FT                 /product="Jockey-5_BTa_2p"
FT                 /translation="MNDFFKLNCDSLTNQNFLMSQQENYPEINFDDVKELR
FT                 AKTNCKSLNIMAWNCGGLTRVKAEEFNVTLRDFNVDIALLSETWFTRTDYK
FT                 RYFAGYKMFNSFHPANKHRGGSSILIKENITHNLIKMIETNAFQVVIVNVQ
FT                 TELDSFNIASIYTPPRNILSTEDYTEFLEELGPKYLIGGDWNAKNPRWGSR
FT                 RDNPKGVSLLEAVNLVGGNFISPGKPTNFPTNPGHQPDLIDFFVFKNINLI
FT                 DHVSCDTLMSMEKGHAKIILEIFTTPILDNRPPSTCSKRTDWKNFRLDLEN
FT                 LIDNSVPVLTPEDIDRESELLVENIRSCAAANTPVAVNNIKPYAIPKELLK
FT                 LIRLKRKTKRKANFTHFPEDNSKFNRLNAIVKKRTQEFLNYKFKKFINSLS
FT                 PSADKNYSLWAATKYLKRPKQLKFPISKPDNTWANTDAEKAEVLADHFEAA
FT                 FQPHEDLETLSDSDVSTGSSDSDLQNEGEVSTLKPRKIKKIPPIKIKTISP
FT                 SEIIKEIKGKIKANKAPGFDKISGLILKNLPNRAIMKLVSIFNAVIRCKYI
FT                 PSQWKIAEIFVLLKPDKPPTEAASYRPISLLPVIGKLFEKLYIKRLNEIVG
FT                 KQNLIIDAQFGFRAKHSTIDQLHRITKFIEDSLEKGEYCVAVFLDVAQAFD
FT                 RVWHERLIGKLYKMLPCNHVELLSSFLSGRQFRVRYENTTSSFRPIRAGVP
FT                 QGSCLSPLLYSLFTTDIPQSGRGGKLGVYADDTLVLAASKSYREARFNAQS
FT                 HLNRINKWTNKDKTKLNASKSVEIVFTNRPFTHIPLHLGNSEIPRDTVARY
FT                 LGLHLDSRLKWGAHIKKKVEQLRLKFHDMQWLIGRKSKLSLETKLLLYKSM
FT                 LRPVWSYGCQLWGCAAKSNLKKIEVIQMKILRSISKARWYERNADIHADLN
FT                 IDSVEDYITKMYNSYETRLHRHPNPEALALLEKDQCTRRLKRRKPHELGIQ
FT                 GFSKLSFF"
XX
SQ   Sequence 5385 BP; 1863 A; 1138 C; 1038 G; 1346 T; 0 other;
     cattcggtgt tgatcattcg agcggtgcgg tcgtggtcgt gctctcgccg gagaaaagct        60
     agtgaaaatt cgcggatgct ttgactttcg aatcgtgcgt aaacgggcga agtccactca       120
     tcgcggtcgg acagcgcgcg caaggcgcgg atgccgtgca taacggcgcg aaaacgtaaa       180
     caagtgcggt gatatcttat gtcgagttcg catcaaatat gcaaacacaa tgttgtttgt       240
     tattggaaag acagtcggtt cgtcggctgt gaaaagtgcc ttgcccgagg aagactggct       300
     ctccccagag cgagtccgtt gaaaactcaa acacctacac ctacagcgat gccaaatgct       360
     gaaaatataa acccgtttca gaaaagttcg attcttccaa gatcgcctcc tggggcatca       420
     ggggaaaata agcccgagaa taatgctaaa gctagcgcac aaccccttcc ggacagcgtt       480
     ggcggttcga ataaagggga ggtagagaca attctaacca cagaccctga aagtgtcaag       540
     ggagaccctg cactaaatga gaagacaaaa ttgtttattt tgcagtcgat ttctgctgtt       600
     aagtcactgc acgatgaaaa catccttgca aaaaatttta tccaagagca aaaggccctc       660
     atggataaaa tacaggccga aattaaggag cttaaactaa ataagtcgca acctcaagtg       720
     gccggcggct ctaaaaataa ggggaagaca ttcgtgactg tcaacaagga aattccccaa       780
     caaaacggcg ggaaatttgg agccctgctg ctagatgcgg aaacggatga tgatttttca       840
     tcaggtgact ggccgaacta caattcagat ccggagtatc aagaccaacg aaggacggcg       900
     gcaaagaaag ttaaaaaaac tacaaagagg aaaaggaagc aggatcaatc cagcccggac       960
     tccaaagacg cctctggaag tggagcagac gtccaagcta cacaggataa gtcgaataac      1020
     tctaagcctg gcgataagtc taatacctct aatcctaatg ataggtcccc aaaaattcta      1080
     ccaccccctc ccattaaagt ggtaggaatt aaagattatc aggaaattaa gcgacttttg      1140
     aaagaagcgt ctgataaaga agagtatgtt ttaaaatttt taggtagtga aacctggaag      1200
     gtaaatccct ctaacgacga aactttcaga aaaatctctg aaaaattaaa cgaaagagaa      1260
     gtacaatggt attctcactc caataaaaac actcggaaca tcaaagttgt atgcaaaggt      1320
     ctccccccct ccatacctga agatgaaatt gtctcggatc tcctttcaaa aaatttcaaa      1380
     attaaatcag ccgtttgcat gagaaaaaga gtagagaaac aacagaaaaa aaatgaaaaa      1440
     acaattatgc ctatggatac tgatcctgaa tctgctaccc cccttcaaac taccccttcg      1500
     gtaacaacat ctgaaaatca aactacaaat gctaaaccta tcaaggaatt cgaactcata      1560
     aaaataccag ttcatcaact tgattttgac cattcagaat caatagaaaa catctataag      1620
     atcaaagcaa ttgctcatac tattgttcaa atagagccaa tgaagataga taataagata      1680
     gttccacagt gccgaagatg tcagtgtttt tcgcatactc acaacttttg cagaaaaaat      1740
     ccacgatgtg tcaaatgcgc aggcaaacat ttatctcctg agtgtccttt taaaggtcgg      1800
     atcttaaatc caaaatgcgt aaattgtggc gcgattggtc atcccgcgag ttatcgcgga      1860
     tgtcccttcg cgaaagaatt tcaagttgca cgaaaaaagc aactccaagc taagaaaaac      1920
     tcccctgatc aaaaaagttt tccgaaacta gggaaaaata taacaactca tgctcctcca      1980
     aagaaattag ataggacttt tgctcaagca ttatcaggca atacagctaa tccggcaaca      2040
     cagggcgcag gagacagttc tgccgctctg atcggtgtct tattacaaac aatagaaact      2100
     ttgaatgctc agctcagagt tctcaccgag aaagtgagta aacttgaagc tagccagaaa      2160
     agataaacaa agaaatgaat gactttttta aattgaattg tgattcattg actaatcaga      2220
     atttcttaat gtctcaacag gaaaattatc cagaaatcaa tttcgatgat gttaaagagc      2280
     tacgagcaaa gactaattgc aagtcattaa acattatggc atggaactgc ggcggactga      2340
     cccgggtgaa ggccgaagaa ttcaatgtca cgctaaggga tttcaatgtg gacatagccc      2400
     tattatcgga aacctggttc accaggaccg attataaaag gtattttgct ggatataaaa      2460
     tgtttaactc atttcatcca gcaaataagc acagaggtgg gtcttccatt ttaattaaag      2520
     aaaacattac tcacaatctt atcaagatga tagagacaaa tgcttttcaa gttgtaatcg      2580
     taaacgtgca aactgaatta gactctttca acatagcctc aatatacact ccaccccgta      2640
     acatcctctc aactgaggat tacactgagt ttttggagga attaggccca aagtatctga      2700
     tcggtgggga ttggaacgct aaaaatcctc gatggggatc caggagagat aaccctaaag      2760
     gcgtatcact cctagaagca gttaatttgg ttggcgggaa ttttatatcc cccggaaaac      2820
     cgacaaattt tcccactaat ccaggccacc aacctgatct aatagacttt tttgttttta      2880
     aaaacataaa tcttattgac cacgtctcat gtgatacctt aatgtctatg gaaaaaggtc      2940
     atgcaaaaat cattctggag atttttacta ctccaatcct tgataatcgt cccccctcaa      3000
     cttgctctaa aagaacagat tggaaaaatt tcaggttaga tctagaaaat ttaattgaca      3060
     acagcgttcc agtcctcact ccagaagata ttgacaggga gtcggagctg ctggtggaaa      3120
     atatcagatc ctgtgcagca gccaatacac ctgtagctgt aaataacata aaaccttacg      3180
     ctatcccaaa ggaacttcta aagcttattc gtttaaaaag aaaaaccaaa agaaaagcaa      3240
     atttcaccca ttttcctgaa gacaattcaa aatttaacag attaaatgca atagtaaaga      3300
     aaagaacaca agaattttta aattacaaat ttaaaaaatt tattaactcc ttgtctccgt      3360
     cagcagataa aaactactct ttatgggcag ccacaaaata tttaaaaagg ccaaaacagt      3420
     taaaattccc aatcagcaaa cctgacaata catgggcaaa tacagatgct gaaaaagcag      3480
     aggttttagc tgatcacttt gaagccgctt ttcaaccgca cgaagacctg gaaacactat      3540
     ctgactctga tgtttccacc ggcagttctg actcagattt gcagaatgaa ggggaagtgt      3600
     ccacattgaa accccgaaaa atcaaaaaaa tcccaccaat aaaaataaaa accatatctc      3660
     cctcagaaat cattaaagag ataaaaggta aaattaaggc aaacaaagca cctggatttg      3720
     ataaaatctc aggactgatt ttgaagaact tgcctaacag ggcaataatg aaattggtct      3780
     caatctttaa tgctgtcatt agatgcaaat atattccctc tcaatggaag atagcggaaa      3840
     tcttcgtcct cttaaaacca gacaaacctc ctacagaggc tgcatcttac aggccaattt      3900
     cgttgttgcc tgttatcggc aaactctttg aaaaactgta cattaagaga ttgaacgaga      3960
     tagttggcaa gcaaaatcta ataatcgacg cccaatttgg tttccgagcg aaacattcta      4020
     caattgatca acttcataga ataactaaat ttatagaaga ctccctggaa aagggagaat      4080
     actgtgtggc ggtttttctt gatgtagcgc aggcatttga tcgtgtctgg cacgagcgcc      4140
     tcatcggaaa actctacaaa atgctcccat gtaaccatgt tgaactcctg tcttcatttt      4200
     tatcaggtag acaatttaga gtgcgatatg aaaataccac ctcaagtttc agaccaataa      4260
     gggcaggagt tccgcagggt tcctgtcttt ccccccttct ctattccctt ttcaccacag      4320
     acatcccgca gtctgggaga ggggggaaac tgggagttta tgccgatgat acgcttgtgc      4380
     tagcagcgtc gaaaagctac agggaggcac gttttaacgc tcaatcccac ctaaacagga      4440
     ttaataaatg gacaaacaaa gataagacca aattaaatgc gtctaaatcg gtagaaattg      4500
     tatttaccaa caggccattt actcatattc ctcttcactt aggaaactct gaaatccctc      4560
     gcgacacagt cgcccgatat ctcggcctcc acctggattc caggctcaag tggggtgcac      4620
     acataaagaa aaaagtcgag caattaagac ttaaatttca tgatatgcag tggctgattg      4680
     gccgcaaatc caagttatct ctagaaacca aactgctcct ctacaagtca atgttgaggc      4740
     cggtttggag ttatggctgc cagttgtggg gctgtgcagc caagtcaaat ttaaaaaaga      4800
     tagaagtcat acaaatgaaa atattacgaa gcatttcaaa agccagatgg tatgagagga      4860
     acgcggatat tcacgccgac ctcaacattg attctgtaga ggactacata acaaaaatgt      4920
     acaactctta cgaaactagg ctgcataggc atcccaaccc agaagcgctt gcgcttctgg      4980
     aaaaggacca atgcacccga agattaaaac gtcgcaaacc ccacgagctt ggaattcagg      5040
     ggttctcaaa attatccttc ttttaaactg acgggcctcc ttgtgctctt cgaacgcaat      5100
     caggggctct tgggcatttg accgggttcg gtcacccgca ttccatgtca aagcaaaaag      5160
     acatttttac tttgaagcaa aattgtttta tttttccctc ctcatttttc agaggttgta      5220
     tttctctcca tataaaaatg tgtgtaacct agtataagtt tatcttataa gttaaaccca      5280
     agttttttaa agatgtatct tacatctaaa aacattctgt acatattata acttttgtac      5340
     aaataataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa                      5385
//
ID   Jockey-5_CQ repbase;    DNA;    INV; 4434 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4434
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 116-116 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..1526
FT                 /product="Jockey-5_CQ_1p"
FT                 /translation="MDTEGSTSEGGDGSTKVIEVNIPTSNQFDGLEDEQGD
FT                 DPISLPPNPTPPPVLRIGEPAKGKKVRVPPISVVGKSTRQLREFLGQSRIQ
FT                 QTAFNMKATKTGVQLICSGEDTFRSALAALRGANIQYHTYTPAAEQPMKVV
FT                 LSGLPVYDEAELETELAVLGVHVQELKLFSRKVAGLEESALYLLHFAKGTV
FT                 KLSDLQKVKAVFNIVVRWRYYERKPTDAVQCHRCQRFGHGMRNCNLAALCV
FT                 KCGEKHLSAECRLPNKADLARVDKNVTREAIKCANCSGQHTANYRGCPTRK
FT                 NYLAKLAEKKAQLRNAKPPILTPPRNTVPQNGSTGNDSPVGTSTMTFAEAL
FT                 SQGSSNNTNSDLFTMSEFLALAREVFARLKSCKSRLDQLEALVELTAKYIY
FT                 SV"
FT   CDS           1456..4188
FT                 /product="Jockey-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KAANRDSTNSKLSWSLQPSISTVSNAVDILRVANWNG
FT                 RSVHGKKLEFFDFLERHDVDVGIVTETWLHEEQAFYHPKFRCVRFDRDSAD
FT                 AERGGGVLIAVRKGLTHTELDFSTKVIETVGISVSTADGNVHIIAAYFPGA
FT                 RRRSAWTQFRRDISTITRGAEPFFVVGDFNARHRSWNCARANXAGTVXFQE
FT                 AASRNFFVHFPDAFTFHPXGRGRPSTLDLALSNNLLDMTKPVALNELSSDH
FT                 RPVLFDVSLSAPIEQSSPKFRCYARADWPRFQREINAKLDLLNPEVTDLNT
FT                 EADVDAAVEFLTKTLLEPKLFQFQKFNSVATXLXQSRGHPQADRAPQHAKA
FT                 SMVQETGPDLPGHRVVTKPXNSEECNQANFNKFKDTLRTLHDDRDTLWRIT
FT                 KALRKTTKYSPPLRXGTNIIASSSEKAXLLAASFAXAHTNQMPDDPVTVAE
FT                 VNNSIDXIDRTPLADNHSWLVRPKEVAQLIRRLKAKKTPGQDQLRNIVLKR
FT                 LPRKAHIFIAKIFSACVRLGYFPAAWKHAVVIGIPKPNKDATNPSNYRPIS
FT                 LLPTLSKLLERVILVRIDQHLENTRVIPDAQFGFKRGHSTNHQLVRLVKEV
FT                 RANFARRKSAGMVLLDVEKAYDSVWQEAILHKMYLANFPLYILKIVRSFLQ
FT                 NRSYHVAVNGHVSDRHEVLFGVPQGAVLSPTLYNIFTADLAMINGVSYFLF
FT                 ADDTGFLASDSDPAIVVTKLQAAQNAIERYQKKWKMKTNAEKSQAIFFTRK
FT                 RSPRYLPRREVSVWGSHVPWSEDVNYLGAALDKKLTLAKHIKNATTKCGKI
FT                 TRMLYPLVKRRSYLDRNSKLLLYKTVLKPAMTYAYPAWHDCAASHRKKLQV
FT                 KQNRLLKMVLNLDPFHPTDDVHRMAKMELIDDWLLRVLPKFWMGCATSANP
FT                 LLQRMSP"
XX
SQ   Sequence 4434 BP; 1076 A; 1322 C; 1197 G; 821 T; 18 other;
     gtatccaaat ccgtgacgcg agttgacacc ctggcttggt agtgtaaaca aaccaacgtt        60
     ttcgtggtgc atattttttc gattttttcg ctgttttacg gttcggttac ctgcgaatcg       120
     gcatcctgtc ggaccaggtg aactccgcgg acacgggagt gcaaaatgcg gccgaagaaa       180
     cggcgcaaac ggtacaagtg aacagtgcac aaaaacgcaa gcttgacgac gaccctaacc       240
     tcgaagagga aacaccgacg aagaacccgt acaacctgag gtcgacgacg gcggcagcgg       300
     cagcagcagc agcggcggca gcagcagcgg cacttgcgat ggacaccgaa ggcagcacca       360
     gcgagggtgg tgacggttca acgaaggtga ttgaagtcaa cataccgacc agcaaccagt       420
     tcgacgggct ggaggatgag cagggtgacg acccaatttc gttgccgcca aatccaacac       480
     cacccccggt tttgcgaatc ggggaaccwg caaaaggaaa gaaggtgcgt gtacctccta       540
     tctcggtggt cggaaaatcg acccggcagc ttcgcgaatt tctggggcaa agccgaatcc       600
     agcaaacagc gttcaacatg aaggcgacga agactggcgt acagctgatc tgctctggtg       660
     aagacacctt ccgcagtgca ctcgcggccc ttcggggtgc caacatccag taccatacgt       720
     acacccccgc tgctgaacag ccgatgaaag tagtcctttc gggactgcca gtgtacgacg       780
     aagctgaact ggaaactgag ctggctgttc tcggcgtcca cgtccaggag cttaaactgt       840
     tctcgcggaa agtggccggg ctggaggaga gtgcgctgta ccttctccac tttgccaaag       900
     ggacagtgaa gttgtccgat ctgcaaaagg tgaaggcggt gttcaacatc gtcgttcgtt       960
     ggcgttacta cgagcggaaa ccgacagatg cggttcaatg tcaccgttgc caacgcttcg      1020
     ggcatggaat gcgcaactgc aatcttgcgg cgctgtgtgt gaaatgtggc gagaagcacc      1080
     tctcggcaga gtgcaggctg ccgaacaaag cggacctggc gagggtggac aagaacgtga      1140
     cgcgagaagc gataaagtgt gcgaactgca gcggccagca caccgcgaac taccgtggct      1200
     gtccaactcg gaaaaactac ttggccaaac tggccgagaa gaaagcacaa ctcaggaacg      1260
     ccaaaccccc aatcctgacc cctccccgca acaccgtgcc gcagaacggt agcaccggca      1320
     acgactcacc ggtcggtaca tcgaccatga cattcgcgga agcgctgtcc caagggagca      1380
     gcaacaacac caacagcgac ctgttcacaa tgtctgagtt cctcgccctt gcgagagaag      1440
     tgttcgcccg gctgaaaagc tgcaaatcgc gactcgacca actcgaagct ctcgtggagc      1500
     ttacagccaa gtatatctac agtgtctaac gctgtagata tcttgcgcgt ggctaactgg      1560
     aacggacgat ccgttcacgg aaagaagcta gagtttttcg acttcctgga acggcacgac      1620
     gtggacgtgg gaatcgtgac cgaaacctgg ctgcacgagg aacaagcctt ctaccatcca      1680
     aagttccgtt gtgttcgatt cgaccgcgac tcagccgatg ccgaaagagg cggcggcgtc      1740
     ctgatagcgg tccgcaaggg cctaacgcac acggagctcg acttttcgac caaggtcatc      1800
     gaaactgttg gcatttccgt cagcacggcg gacggaaacg tacacatcat cgctgcctac      1860
     ttccccgggg caagacggcg ctcagcatgg acacagttcc gccgcgacat ttccaccatc      1920
     acgcgggggg ccgagccttt cttcgtggtc ggtgatttca acgctcgaca tcgttcctgg      1980
     aactgcgcwc gggcgaacam agcggggaca gtcmtgttcc aggaggcagc cagccgcaac      2040
     tttttcgtcc acttccctga cgccttcacs ttccacccgk cgggccgcgg tcggccctcg      2100
     acgttggact tggcgctctc caacaacctg ctggacatga cgaaaccggt cgccttgaac      2160
     gagctctcgt cagaccaccg gccwgtgctg ttcgacgtca gcctgtcagc tccgattgag      2220
     cagtcatccc ccaagtttcg ctgctacgct cgtgccgact ggccgcgctt ccaaagggag      2280
     ataaacgcga agctggactt gctgaacccc gaagtcaccg acctcaacac ggaagccgat      2340
     gttgacgcmg cggtagagtt cctcaccaag accctgctgg agccgaagct gtttcagttc      2400
     cagaagttca acagcgtagc taccamactg ckacaatccc gaggacaccc gcaggctgat      2460
     cgcgctccgc aacacgcgaa ggcgtcaatg gtacaggaga cgggacccga tctaccagga      2520
     catcgtgtcg tcactaaacc gkcgaattcg gaggagtgca accaggcaaa cttcaacaag      2580
     ttcaaggaca cgctacggac gctgcacgac gatcgggaca cgctttggcg aatcaccaag      2640
     gccctgagga agacgaccaa gtacagccct cccctgcgcm agggaacaaa tatcatcgcm      2700
     tcctcatccg agaaggccma actactggcg gccagcttcg ctmgcgctca caccaaccag      2760
     atgcctgatg atccagtgac tgtcgcagag gtgaacaact ccatcgatkc catcgatcgg      2820
     accccgctgg cggacaacca ttcgtggttg gttcgtccca aagaggtggc gcagctcatc      2880
     cgaagactga aggcgaagaa aacaccgggc caggatcaac tgagaaacat cgtgctgaag      2940
     cggcttcccc ggaaggcgca catcttcatc gcmaagatct tctccgcctg tgtccgactc      3000
     ggatacttcc cagccgcgtg gaagcatgcg gtggtgatag gcattccgaa gccaaacaag      3060
     gacgccacta acccctcgaa ctatcggccg atcagcctgc tgccaaccct cagcaaactc      3120
     ctggagcggg taattctggt gcgcatcgac caacacttgg agaacacgcg ggttattccg      3180
     gacgcccagt tcgggttcaa gcgagggcac tccaccaacc atcagctcgt tcggctcgtk      3240
     aaggaggtgc gcgcgaactt cgcgcggcgc aagtcagccg gcatggtgct cttggacgtc      3300
     gagaaagcgt acgactcggt gtggcaagaa gcaatcctgc acaagatgta cctcgccaac      3360
     tttccgctgt acatcctgaa gatcgtccgc tcgttcctgc aaaaccgatc gtaccacgtt      3420
     gcggtaaacg gacacgtgtc ggaccggcac gaagttctct tcggcgtccc gcaaggcgcc      3480
     gtccttagtc ccacgctcta caacatattc acggcggact tggcaatgat caatggcgtc      3540
     agctacttcc tcttcgccga cgacacgggg ttcctcgcgt cggactccga cccggccatc      3600
     gtcgtgacca agctgcaagc cgcccaaaac gccatcgaac gctaccagaa gaagtggaag      3660
     atgaagacaa atgccgagaa gtcgcaagcg atcttcttca cacgcaagcg aagcccacgc      3720
     taccttcccc gcagggaggt ttcggtgtgg ggtagccatg tgccatggtc ggaggacgtc      3780
     aattacctgg gggccgccct ggacaagaag ctgacgctcg cgaagcacat caagaacgcc      3840
     acgaccaagt gcggcaagat caccaggatg ctctacccgc tcgtgaaacg gcgttcctac      3900
     ttggaccgca actcgaagct gctgctctac aagacggtgc tcaagccggc gatgacgtac      3960
     gcatacccgg cgtggcacga ctgcgccgct tcacaccgga agaaactgca agtgaagcag      4020
     aaccggctgc tgaagatggt gctaaacctg gatcccttcc acccgactga cgacgtccac      4080
     aggatggcga agatggagct gatcgacgat tggctcctgc gagtgcttcc gaagttctgg      4140
     atggggtgcg ccacctcagc caaccccctg ctgcagcgga tgtccccttg agctgtgata      4200
     ttagaataag aaatgcctcc tttcctctaa ctatccccca tctattagca atttcgaagg      4260
     ttatttttgc aattttttcc ctcccctgcc caattcgttc tcccgtgtac cagtaaactc      4320
     taacaccgtt tgaactagtc agctgttgaa aggtacccca tatctcagct caggataact      4380
     actgcaccga tgtttttgcc aaagcaaccc aataaatgaa atgaaatgaa atga            4434
//
ID   Jockey-5_DAn repbase;    DNA;    INV; 4973 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4973
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 386-386 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..2036
FT                 /product="Jockey-5_DAn_1p"
FT                 /translation="MEESSARXQSSSRSDKFDKMRQIAGADPGEIRSQIRD
FT                 RRSELSAYLTGMPEQTRTSSSMVTISSNTTTSVTCTISNANTSLGNSSTYT
FT                 VAATTSGSICSTTSPLANVLPSLVNKPSNSKCLFQAPGRTGSRKRKXVTQS
FT                 SLPALAPPPIRKAKLQTSTPLNKTADSFFAKALGSNRFAILAAEADQMEQD
FT                 LEDVDSINGDTGALGGDDHSAKSSKIPAICVPNVSDPVLLENALDHSIGSS
FT                 NYYIRTSKFGVSRIYAANSNAFRAAVNELTSLNCQFWHHQLKEDKPYRVVL
FT                 KGIHSNVPKSQIEQGFTDKGFEVLNIYCPKKSDWKNIPVNEDDNEATINFK
FT                 TRQNLFFVNLKQSANVAESLKITQLGRYRVTVERASRRKDLLQCQRCQIFG
FT                 HSKNYCVLDPICGKCSGPHATGSLLCVSDTYLCINCGGNHVSTDNSCPVRI
FT                 DKIKKLKPRPRLPITNPRHVSRGFIPGEALRTNISYADIARPKDMQPRTSS
FT                 TFQSDASSSSDPRLNHKFSIIDNAIRDINSKLDTLFKLMQENAESNKSFRE
FT                 LVQVLIARLPK"
FT   CDS           2036..4783
FT                 /product="Jockey-5_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTQLTINIGLWNARGLVRVSEELRLFLSTHNIDILLA
FT                 TETHMRAGQRIYLPGYLIYHAYHPSGNNRGGSAVIIKDSLSHYPLPPTSSN
FT                 DRQIARVQLQTSDGNVTVAAIYLPPTETWIQSEFESLLTDFGGKFIAGGDY
FT                 NAKHAWWGNSRACRRGKQLQEAIANGRYQVLATGEPTFYSYNPLLTPSALD
FT                 FFIINGYSMDRLQVRTLHELSSDHTPILATLHSTPVKNPQRPRLLARGANI
FT                 NSFKNHLEQLGEINIQIQDPSDIDNAISTFMRFINQAAEIAAPSNHRSTDT
FT                 SRHPHLPPRIAALLNLKRRVRREFTRTGDIRIHQIYHRLANCLSKVLAQRK
FT                 QDSIDRLLESLDTDASSNYSLWRITKRYKXQPTLKSAIRNPSGDWCRTSLE
FT                 KAEVFANNLEQRFKPFDYSPESIRQQVEEFLESPFQMSLPANPVSLTEVKD
FT                 LVRKLSPKKTPGEDLLDNRTIRLLPDQALQFLVMLFNSVLTIGYFPKVWKS
FT                 ANIHMIPKPGKSLTDVDSYRPISLLPSLGKIMERLILNRLLSDENVTSVIP
FT                 DFQFGFRLQHGTPEQLHRVVNFGLEALERKEYAVAAFLDIQQAFDRVWHPG
FT                 LLYKAKSIFTPQMFQLVKSFLEDRTFHVSVDGYMSSIKPISAGVPQGSVLG
FT                 PTLYSIYTSDMPTQTPITEVNENDVLIATYADDTAVLTKSTSILAATFALQ
FT                 EYLDAFHQWAMNWNIRINADKCANVTFTNRRSTCPGVNLNGSPIRAFPAYK
FT                 YLGVTLDKKLTFGRHITCVQNSFKNKVARMAWLLAPRNKLTLGCKVQIYKS
FT                 ILAPSLFYGLQVYGIAAKTHLNKIRVLQAKTLRRISGAPWFIRTRDIERDL
FT                 NVPKIGDKLQKLSQKYMQRLNDHPNSLANRLGTAAINNADPRTRVRRRLKR
FT                 FHPQDLPDRILT"
XX
SQ   Sequence 4973 BP; 1503 A; 1159 C; 995 G; 1311 T; 5 other;
     gtcacactaa cctaataatt gtgcaaattt ttcttgtgga agaaaaattt tatattattg        60
     ttatttcgaa caattatctc aagtaatcct gctgaggcct tattaccgct cgtgtgtaca       120
     ccttgcgcac gaagtctact tttggtcgct gcagggcagt ggctactttt ggtcgctgca       180
     gggcagtggc tacttttggt cgctgcaggg cagtggctac ttcgacagcg agtaaktcaa       240
     cagcgataag taagacaata agagtgttgg tcttacccct cgctctacgc attgcgtaag       300
     cgggaggtcg tttacatatt attctgaaga cttttggttc taaactgaaa actattgata       360
     taatggaaga gtcatctgct cgccstcagt ctagcagcag gagcgataaa tttgataaga       420
     tgagacaaat agctggtgca gaccctggag aaataagatc ccaaatccgc gaccggcgct       480
     cagagctatc tgcctacctt acaggtatgc cggaacaaac acggacctcc agctcaatgg       540
     tgacaattag cagtaacact actaccagtg taacctgcac tatttcaaac gccaatacaa       600
     gtttgggcaa ttcttctacg tacaccgtgg ctgcaactac atccggcagc atttgttcaa       660
     ctacgtctcc gcttgcaaat gtattacctt cgttggtaaa taaaccaagc aattcaaaat       720
     gtctgtttca agctcctgga cgaactggca gccgaaaacg caaagamgtg actcagtcct       780
     ctttacctgc tctcgctcca cccccgatcc gcaaagctaa gctgcagact tcaaccccgc       840
     tcaacaagac ggctgattct ttctttgcaa aggcattggg tagcaatcgt ttcgcgattc       900
     tggctgctga agcagatcaa atggaacagg atctggagga tgttgattcc atcaatggag       960
     atactggtgc ccttggagga gatgaccatt cagcaaaatc tagcaaaatc cctgctatct      1020
     gcgttccgaa tgtaagcgat ccggtcttat tggaaaatgc tcttgatcat agcattggct      1080
     cctcaaacta ctacattcgt acttccaaat ttggtgtttc cagaatatat gcagccaact      1140
     ctaacgcttt tcgagcagct gttaatgaac tgacgtcgct taactgccaa ttttggcacc      1200
     atcagctaaa agaagacaag ccatacagag ttgtgctcaa aggaatccat tctaacgttc      1260
     caaaatcaca aattgaacag ggatttactg acaagggctt tgaggtcctc aacatatact      1320
     gccccaaaaa gtctgattgg aagaacattc cggttaacga agatgataac gaagctacaa      1380
     taaattttaa aactaggcaa aatttatttt ttgtcaattt aaagcagagt gctaatgtag      1440
     cggagtccct aaaaataact caacttggta gatacagagt cactgttgag cgtgcttctc      1500
     gtagaaagga tctacttcaa tgccaaagat gccaaatttt tgggcactct aaaaactatt      1560
     gtgtcctgga ccctatttgt ggtaaatgta gtggccctca tgctactgga tctttactct      1620
     gtgtaagcga tacatacttg tgtataaact gtggcggtaa ccatgtctca acagataata      1680
     gttgcccagt cagaatagac aaaattaaaa aactaaaacc gaggcctaga ctcccgataa      1740
     ccaatccacg acatgtctct cgtggattca tccctggtga agccctaaga acgaatatat      1800
     cgtatgctga tatagctcgg cccaaggata tgcaaccaag gactagctca accttccaga      1860
     gtgacgcaag ctcttcttct gaccctaggc tcaaccataa attctcaata atagataatg      1920
     ccatccgcga catcaattcc aaactggaca ctctatttaa gctgatgcag gaaaatgcag      1980
     agtccaacaa atcgttcaga gagctggtcc aggttctcat tgcgcgtttg ccgaaatgac      2040
     tcaattaact ataaatatcg gattgtggaa cgctcgtgga ttagtcagag tttctgaaga      2100
     gcttcgatta ttcctcagca ctcataacat agacatattg cttgccacag aaactcacat      2160
     gcgtgctggt cagcgcatct acttgccagg ctatctcatc taccatgctt atcaccccag      2220
     tggcaacaat aggggtggat ctgcagtcat tataaaggat tccctaagtc actatcccct      2280
     gccccctacc tctagcaatg acagacagat agcgagagta caattacaga cttcggatgg      2340
     gaatgtcaca gtggcggcga tatacctacc tccaacggaa acatggatac aatcagaatt      2400
     tgaatccttg ctgaccgatt ttggtggcaa gttcattgct ggcggtgatt ataacgccaa      2460
     gcatgcttgg tggggaaact cacgagcctg tagaaggggt aagcagttgc aagaagccat      2520
     tgcaaatgga cgttaccaag tacttgccac gggtgaaccc actttttact catataaccc      2580
     tcttttaaca ccgtcagcgc ttgatttctt cataattaat ggatactcta tggacaggct      2640
     acaagtgaga acactccatg agctctcctc ggaccacact cctattctag ccacactcca      2700
     ttctacgcct gtgaaaaatc cgcagcgccc acgactcctt gccagaggtg ctaacataaa      2760
     ctctttcaaa aaccacctag aacagctggg cgagattaac attcaaatcc aggatccttc      2820
     tgacattgac aatgctatca gtactttcat gcgctttata aaccaggctg ctgagatagc      2880
     tgcacccagc aatcatcgaa gtacagatac ctctagacat ccccacctac caccaagaat      2940
     tgctgcgctc cttaacctaa agagaagagt cagaagagaa tttacaagaa cgggagacat      3000
     ccgaatccat cagatatatc atcggctggc taactgtctt agcaaggtgc tcgcccagag      3060
     aaaacaagat tctatagacc gacttttgga aagcctggac acagacgcta gttctaacta      3120
     ttcactgtgg cgtatcacaa aacggtacaa aamtcagcca actctaaaat cagccattag      3180
     aaacccctca ggtgattggt gccgtacgag cctagaaaag gctgaagtgt ttgctaacaa      3240
     cctagaacaa cgattcaagc catttgatta ttcgcctgaa agtatacgtc aacaagttga      3300
     ggagtttctg gaatctccgt ttcaaatgag cctgcctgct aaccctgtct cactgacaga      3360
     ggtgaaagat cttgttcgta aactttcgcc aaagaaaacc cccggtgaag accttttgga      3420
     caacaggacg attcgacttt taccggatca agccttgcaa tttctggtga tgttgttcaa      3480
     cagtgtactt actattggat acttcccgaa agtttggaaa tcggcgaata tacacatgat      3540
     cccaaaacct ggaaagtcgc taactgacgt agactcatac aggcccatta gcctgctacc      3600
     atctctggga aaaatcatgg aaagactgat actgaataga ctactttctg acgagaacgt      3660
     caccagtgtg attccggatt tccagttcgg ctttcgcctt cagcacggaa ctcctgagca      3720
     actacacaga gttgtcaact ttggcttaga agcattagag aggaaggagt atgcagttgc      3780
     tgcctttctg gatattcaac aggcttttga cagagtgtgg caccctgggc ttctgtataa      3840
     agctaaaagt atatttacac cgcaaatgtt ccagcttgta aaaagctttc tggaagatcg      3900
     aactttccat gtatctgtag atggatatat gtcgtccatt aaaccgattt ctgctggagt      3960
     tccccaaggt agcgtccttg gccctacttt atactccatt tatacttcgg atatgcctac      4020
     ccaaactcca attacggaag tgaacgaaaa tgatgtttta attgcgacat atgctgatga      4080
     cactgctgtc ctaactaaaa gtaccagtat cttggcggct acttttgctt tgcaagaata      4140
     tctagatgcg tttcaccaat gggctatgaa ctggaacatc cgaataaatg cggacaaatg      4200
     tgctaatgtt acatttacta atcgaagaag tacctgccct ggagtcaatc ttaatggaag      4260
     tccaataaga gctttccctg catataaata ccttggtgtc accctggata aaaaacttac      4320
     ttttggcaga catataacat gtgttcaaaa ttcttttaaa aacaaagttg ctcggatggc      4380
     ctggttactt gctccacgca ataagcttac gctaggatgc aaggttcaaa tttacaaatc      4440
     tattttagcg ccaagccttt tctacgggct acaggtttac ggtatcgctg ccaaaaccca      4500
     tctaaataaa atccgggttt tgcaagcaaa aacccttaga aggatctctg gagctccgtg      4560
     gttcatccga acaagagaca ttgaacgcga tctcaacgtg cccaaaatcg gagacaagct      4620
     gcaaaagctt tctcaaaaat atatgcaacg attgaatgat caccccaaca gccttgccaa      4680
     tagacttggc accgcagcta ttaacaatgc tgatccacga acaagagtca ggagaagatt      4740
     aaaaagattt caccctcaag acctaccaga ccggatcttg acttaaaatt ttcaccaaac      4800
     acattttatt tctttcctgt aatcatatct tgccctaagc accgcttaga catagttttg      4860
     ttattaattt tgataagacg attagattaa gctgccattt gggtagcagt gcgctaatca      4920
     tgwgaataaa atttctacat atataaaagt aaaaaaaaaa aaaaaaaaaa aaa             4973
//
ID   Jockey-5_DBp repbase;    DNA;    INV; 4705 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4705
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 713-713 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~92% identical to
CC   that of Jockey-7_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..1888
FT                 /product="Jockey-5_DBp_1p"
FT                 /translation="MSEFDTHTVLQRQQDERRLSLLRNNAYHSFVSTQDNA
FT                 TANPTKNNQPRSITPTPSNELYPTSQGRARSCSPALSLDKTPYPSLMPACI
FT                 ATVTSTVTSLATATATITTTTMVSTARAIPSTVISETAVQANNAAPYTSVP
FT                 PSKQRSAVQTGMDRYIQIKRKLSPQNSRLGNSAKITRGTSKQSTIEKPIEA
FT                 NRFAILADKSDDTPPEVIVGDNKKPKPPPIYIREKSSNALVNSILNLIGPD
FT                 NFHIIPLTKGNIHETKVQTNTEANYRILSKYLNDNNKNFYTYQLKSSKGQQ
FT                 VVLKGIEPEVTPDEVTRALMEKGFNVKNVINILNRERKPQPLFKVELEPET
FT                 KSKPLKKNEVHPIFTLQFLLHRRITVEEPHKRNGPVQCNNCQEYGHTRSYC
FT                 TLRPVCVACGDLHESHKCPKNKEDPSSKKCGNCGGNHTANYRGCPVYKELK
FT                 SRTHQRVTTAHSHTPPMKSTRNVFPPSAVKSLANNEVTDKSASYATALKLG
FT                 LKSTAPTNPRSSVSPHQPEEPSTNKLETMICNLQQSMMEFMSFMQTTMQDL
FT                 MRNQNVLIELLVAQKQTK"
FT   CDS           1895..4555
FT                 /product="Jockey-5_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAPLRIALWNANGVSQRKLELTQFLINYHIDVMLLAE
FT                 THLTNKYNFQIRGYLFYNTNHPDGKAHGGTGILIRNRIKHCFHNSFATNFM
FT                 QATSIDVQMDSRSLKLAAVYCPPRFTISESQFMEYFNSLSEQFIAAGDFNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKASNKLDCVSPGTPTYWPTDPRKLPDLID
FT                 FAVTKNIPRNLISANSLPDLSSDHSPVLLHLNLHPVAVDKPFRLTTNKTNW
FT                 LKYKKYISSHIELNPRLNDEADINLSTNTLESVLVAAARVSTPQTQKTSYN
FT                 NRYTNVEIEQLVLAKRRSRREWQSNRSPSAKQRLKDATERLSAALRHEEER
FT                 SQKHYIEQLSPMSSKFPLWRAHSSLCAPIESAMPIRTSTGNWARSDEERAV
FT                 RFAEHLQNVFQPNTSSNGISLPATSDIDTSTYEPIVFRPHELLKIINELNP
FT                 KKSPGCDLISPKMIIELPFCAVRAICQLFNAITRHGHFPERWKKSIIIMIP
FT                 KPGKDRTIASSYRPISLLTCLSKLFEKCFLAHITPYLRTHNKIPIHQFGFR
FT                 EKHGTIEQVNRITSEIRNTFEQREYCTAIFLDVSQAFDRVWLEGLMHKIIE
FT                 MLPTNTHKLLKSYLYNRKFSVRCNSAMSDDYIIRAGVPQGSVLGPTLYLIY
FT                 TADIPTSRNLTTSTFADDTAILSRARCPKQATAQLAIHLVAVEKWLSDWRI
FT                 KVNEQKCKHVTFTLNRQDCPPLILNNTVVPIANVVTYLGVHLDRRLTWRSH
FT                 IEAKRTHLKLKANSLHWLINSRSPLSLDYKVLLYNTVLKPIWMYGSQLWGN
FT                 ASNSSVDIMQRTQSKILRTITGAPWYVRNENIHRDLHIPLVREEIAQIKTK
FT                 YYNRLSVHPNHLARALTRVSSSSRLRRNDLPIQR"
XX
SQ   Sequence 4705 BP; 1619 A; 1176 C; 842 G; 1068 T; 0 other;
     gttcgcgaac gtcggcgagt gcagacgtgc tttctttttg tcttcttatc gtgcaacgaa        60
     aattaaacaa aaactaagca tagtgcagtg caagctctaa acaaaaatac acagtgggcg       120
     aaaagacgct tagtgcgatg aacttcgtac tttttgtgta aataaaaaat aagaaaatca       180
     aaaacattaa gctatgagtg aattcgacac tcatacggtg ctccaacgtc agcaagacga       240
     gcgtcgactc tctttgctac gtaacaacgc ataccactca tttgtgtcaa cgcaagacaa       300
     cgcgaccgca aacccaacaa aaaataacca accgcgatca ataaccccaa ccccgagtaa       360
     tgaactctat ccaacatcgc aaggcagggc gcgttcttgc tctcctgcgc tctcgttgga       420
     taaaacccca tacccttccc tcatgcctgc ctgcatagcc acggtcacca gtacagtgac       480
     gtcattagca actgcaacgg caactattac aacaactaca atggtatcga ctgctcgcgc       540
     aataccatct accgtaatat cggaaactgc tgtgcaagca aataatgcag caccttacac       600
     cagcgtgccc ccttcaaaac aacgttcggc cgtacagact ggtatggatc gctacataca       660
     aataaaacga aagcttagcc cgcagaactc tagacttggt aactctgcta aaataactcg       720
     aggcacctca aaacaatcta caatagagaa gcccatagaa gcaaacagat ttgctatttt       780
     ggcagataaa tccgatgata cacctcctga agtcatcgta ggggacaaca aaaagcctaa       840
     gccgccgccg atttacatcc gagagaaaag ttcgaatgct ctcgtaaact cgatactgaa       900
     tctaatagga ccagacaatt tccacataat tccattaaca aagggaaata ttcatgaaac       960
     taaagttcag actaatacgg aagcaaacta cagaattttg tcgaagtatt taaacgacaa      1020
     taataaaaac ttctacacgt accaattaaa aagcagtaag ggccagcaag tagtactaaa      1080
     aggtatcgag ccggaagtaa caccagatga agttacaaga gcactgatgg agaaaggttt      1140
     taatgtaaaa aatgttatta acattttgaa tagagaaaga aagcctcaac ctcttttcaa      1200
     ggtagaactt gaacccgaaa ccaaatccaa gcctctgaaa aaaaatgaag tgcatccaat      1260
     ctttactctc cagttcctac tacaccgcag aattacggta gaggagccgc ataaaagaaa      1320
     tggaccggtg cagtgtaata attgtcagga atatggccac acaaggtctt attgcacgct      1380
     tcgtccagta tgcgttgctt gtggagacct tcatgaatct cacaaatgcc caaaaaataa      1440
     agaggatccc agcagcaaaa agtgcggaaa ctgtggaggc aaccatacgg ctaactacag      1500
     gggctgtcca gtctacaagg aactgaaaag tcgtacacac caaagagtga ccactgctca      1560
     ctcacataca ccacctatga aatctacacg taatgtcttc cccccttcag ctgttaaatc      1620
     tttagccaat aatgaggtca ccgacaaatc cgcaagctat gcaactgctc taaaattggg      1680
     tcttaaaagt accgctccca ccaatccaag atcatcagtt tcccctcatc aaccagaaga      1740
     accgtctacg aacaaacttg aaacaatgat atgtaatctt caacaaagta tgatggagtt      1800
     catgtcattc atgcagacaa ctatgcaaga tcttatgcga aaccagaacg ttttgattga      1860
     gctgcttgtt gctcaaaaac agactaaata atcaatggct ccactccgta tagcactgtg      1920
     gaacgccaac ggcgtctcac agcgcaaact cgagttaact cagttcctta ttaattacca      1980
     tatcgatgta atgctactcg cagaaactca tctcacaaat aaatataatt ttcaaattcg      2040
     aggctatcta ttctacaaca cgaatcaccc agacgggaaa gctcatggag gcactgggat      2100
     tctgattaga aatcgcatca agcactgctt ccacaatagc ttcgccacta acttcatgca      2160
     agctacatca atagatgtgc aaatggattc ccgatcttta aagcttgccg ccgtatactg      2220
     tcctcctcgg tttacaatat cagaatccca attcatggaa tatttcaact ctctgagcga      2280
     acaatttata gcagcaggag acttcaatgc caagcacacg cactggggat ctcgacttgt      2340
     gactcctaag ggaaggcagt tgtacaatgc aataataaaa gcaagcaaca agctagactg      2400
     tgtgtcacct gggacaccta catattggcc aacagatcct agaaaactgc cagacttgat      2460
     agattttgca gtcacaaaaa acattcctcg caacctgata agtgccaact ccttaccaga      2520
     tctatcgtct gatcactcgc ctgtacttct tcatctaaat ctacatccag ttgcggtaga      2580
     taaaccattc agactaacaa cgaataaaac caattggctt aagtacaaaa aatatataag      2640
     ttcgcacatt gagttgaatc cacgtttgaa tgacgaagct gatatcaact tatccacaaa      2700
     cactcttgaa tccgtcttgg tcgcagcagc tcgcgtatca actccacaaa cgcaaaaaac      2760
     atcgtacaat aatagataca cgaacgttga aatagagcag ctcgttctag caaagcgacg      2820
     ctcacggcga gaatggcaat ccaacagatc accatccgca aaacaaaggt taaaagacgc      2880
     tacagagagg ctctcagctg cacttcgtca tgaagaagaa aggtcccaaa aacattacat      2940
     agaacagtta tccccaatga gctccaagtt cccactttgg agagcacact catctctctg      3000
     cgcaccaatc gaatctgcaa tgccaataag gacatccaca ggcaactggg ctcgaagcga      3060
     cgaagaaaga gccgtcagat ttgcagagca tcttcaaaat gtatttcagc ccaacacatc      3120
     atcaaacggg atctcactgc cagcaacatc agatatcgac acatcaacgt atgaacctat      3180
     tgtatttagg ccacatgagt tactcaaaat cataaacgaa ctcaacccaa aaaaatctcc      3240
     aggatgcgac ctaatatcac caaaaatgat tattgaactt cctttctgtg ctgttcgagc      3300
     tatttgccag ctcttcaatg caataacgag acacggacac tttccagaga gatggaaaaa      3360
     gtcgatcatt ataatgatac caaaacctgg caaagaccgc acaatcgctt catcatatag      3420
     accaattagt ttactaacgt gtctatcaaa actctttgaa aaatgcttct tggcacacat      3480
     taccccatat ctcagaacac acaacaaaat cccgattcat caattcggtt ttcgagaaaa      3540
     acacggaacc attgagcaag tcaaccgcat aacctcagaa atccgaaata cattcgaaca      3600
     aagggagtac tgcactgcga tatttctgga cgtatcacaa gctttcgaca gagtatggtt      3660
     agaaggtcta atgcacaaaa ttatagaaat gctcccaacc aacactcaca aacttctgaa      3720
     gtcataccta tacaacagga aattctcagt aagatgtaat tcagccatgt ccgatgacta      3780
     catcattaga gccggagttc ctcaaggcag cgtgcttgga ccaacactct accttatcta      3840
     cactgcggac atcccaacga gcaggaatct aaccacatcc acttttgcag atgacacagc      3900
     gatcctaagc cgcgcgagat gccccaagca agcaacggcg caacttgcta tacacctggt      3960
     ggcagtggag aaatggctat ccgactggcg aatcaaagtt aacgaacaaa aatgcaaaca      4020
     cgtaacgttc actcttaaca ggcaagactg ccctccactt attcttaaca acacagtggt      4080
     tccgatagca aatgtagtaa catatcttgg cgtacacctc gatagacggc ttacctggcg      4140
     cagccacatt gaagccaaaa gaacgcattt aaagctcaaa gccaacagcc tccactggct      4200
     tatcaatagc cgctcgcccc ttagcttgga ctacaaggta ctcctatata acaccgtctt      4260
     gaaaccaatc tggatgtacg gctcccagtt gtgggggaat gccagtaaca gcagtgtgga      4320
     tataatgcaa cgaactcaat caaaaattct cagaaccatc accggggccc cgtggtacgt      4380
     tcggaatgaa aacattcaca gggaccttca cataccactc gtcagagaag agatagcaca      4440
     aatcaaaaca aagtactaca acaggctatc agtacatcca aatcatctcg cgagagccct      4500
     cacgcgagtt tccagcagtt ctcgtcttcg ccgcaacgac ctcccaatcc agcgctaatt      4560
     attaggacca cgtagtctct attcagttca aaacaaactg ttagatattg tattatttta      4620
     agatttgcaa ccttattgtt agactcataa agagtgatcc aataaaaaca aactaagctt      4680
     aaaaaaaaaa aaaataaaaa taaaa                                            4705
//
ID   Jockey-5_DEl repbase;    DNA;    INV; 3999 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3999
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 558-558 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1191
FT                 /product="Jockey-5_DEl_1p"
FT                 /translation="PIIIQLRLKRPLIQTDLKFWKTLLTKRLTKLPKLRRR
FT                 NRSPPPIYIREKSCNALVNKIIELIGKDNFHIIPLVKGSIHETKVQTKNED
FT                 NYRVLSKYLNDKKKNFYTYQLKSSKGLQVVLKGIESDVTPEEVKNALQDKG
FT                 FNTKTVFNILNRDRKPQPLFKIELEPETKPLNRNEVHPIYKLQFLLHRRIT
FT                 VEQPHKRNGPVQCTNCQEYGHTKSYCTLRPVCVVCGDLHDSALCPASKNDS
FT                 NVKKCGNCGGNHTANYRGCPIYKELKSRIHQRGTTARSHNAQLTASKSNPE
FT                 VFFSTAPSSSLGPVTLNKNVTFASALKLGLAPPVSKTSFPQAACLEHNMTQ
FT                 QRQPTEQTQSNFEAMIVSLQQSLMEFMSFMRTTMQDLMRNQNLLIQMLVSQ
FT                 QSK"
FT   CDS           1194..3866
FT                 /product="Jockey-5_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MTSLRISTWNANGVSQHKLELTQFLLDNHIDVMLLSE
FT                 THLTNRYNFQIRGYSFYGTNHPDGKAHGGTGILIRSRIKHHYYNKTAKNYL
FT                 QATSISIQLITGNQLTLAAVYCPPRFNITEYEFLQFFNTLGDHFIAAGDYN
FT                 AKHTHWGSRLVTPKGKQLYNAIIKSNNKLDYVSSGRPTYWPTDPKKLPDLI
FT                 DFAITKNIPKNLISAECLSDLSSDHSPVLFHLLQQPGTLEHQFNLTSQKTN
FT                 WLKFRKYISSHIELCPRLNDEADIDSFVTTLESVLVTAARVSTPQTSNIQC
FT                 KQKKTNLQIEQLVLEKRRLRREWQFYRSPSARQNLKYASRQLTKALKQEES
FT                 YAQRRYIEQLSSTCSKHSLWRAHPSLSSPKETVMPIRNPSGGWARSDKDRA
FT                 STFADHLKNVFQPNPATNAFTLPTFAYDTQLHHEPIEFRPLEIVSIIKNHM
FT                 NPKKSPGCDLITPKMITELPYCAVRTITHLFNAIAKHGHFPKRWKKSIIIM
FT                 ISKPGKDPTIPTSYRPISLLSCLSKLFEKCILTRINTYLRIQNGIPSHQFG
FT                 FREKHGTIEQVNRITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKI
FT                 KTMLPSNTHKLLESYLHDRKFAVRCNTAISDDFSILAGVPQGSVLGPTLYV
FT                 LYTADIPTSSRLTTSTFADDTAILSRSKCPIQATAQLALHLADVEKWLSDW
FT                 RIKVNEQKCKHVTFTLNRQNCPPLTLNNTLLPQSNEVTYLGVHLDRRLTWR
FT                 RHIEAKRTHLKLKASSLHWLINARSSLSLDYKVLLYNSVLKPIWTYGSQLW
FT                 GYASNSNIDIIQRAQSKILRTITGAPWYVRNENIHRDLNIPPVKAVIAEQK
FT                 DKYLTKLSLHPNHLARGLTRLCNQSRLRRNDLPTQRPT"
XX
SQ   Sequence 3999 BP; 1373 A; 1031 C; 695 G; 900 T; 0 other;
     ccaattataa ttcagctgag actgaaacgc ccattaatac aaacagattt aaaattttgg        60
     aagacgctac tgacgaagag gttgacgaag ctaccgaagc tgagaagaag aaaccgaagc       120
     ccccccccaa tatacatccg ggagaaaagc tgcaatgcac ttgttaacaa aataattgag       180
     cttattggaa aagataactt ccatataatt ccccttgtga agggcagcat acacgaaaca       240
     aaagttcaaa cgaagaacga agacaattac cgagtgttgt ctaaatatct taatgacaag       300
     aaaaagaact tctacacgta ccaacttaaa agcagcaagg gtctgcaagt tgtacttaaa       360
     ggaattgaat ccgatgtaac acctgaagaa gtaaaaaatg cactacaaga caaaggtttt       420
     aacactaaga cagtcttcaa tatcttgaac agggatagga aaccgcaacc actcttcaag       480
     atagagctcg aaccggaaac taagcccctt aatagaaacg aagtgcaccc catatacaaa       540
     cttcagttcc ttctccaccg tagaatcaca gtagagcaac cacataagcg caatgggccg       600
     gtacaatgta cgaactgcca agaatatggc catacaaagt catactgcac actacgccca       660
     gtgtgtgtag tttgtggaga ccttcatgac tcagcactct gcccagcgag caaaaacgac       720
     tccaatgtaa aaaagtgcgg caactgtggc ggcaatcata cagccaacta cagaggttgc       780
     ccaatataca aggagctaaa aagtcgcatc catcaacgag gaaccactgc ccgctcccac       840
     aacgcacagc tcacagcatc aaaatcaaac cctgaagtct tcttttcgac tgcacccagc       900
     tcctcactag gacccgtaac cctcaacaaa aatgtgacat ttgcaagcgc tctaaaatta       960
     ggactggctc ctcctgtatc taaaacttca tttccacaag cagcatgtct agaacacaac      1020
     atgactcaac aacgtcaacc aacggagcag acacaaagca actttgaagc aatgatagtt      1080
     agcctgcaac aaagcctaat ggagtttatg tcgtttatgc gcacaactat gcaagattta      1140
     atgcgaaacc aaaatcttct gattcaaatg ctggtctcac aacaatcaaa ataatgacgt      1200
     ccctacgaat ttctacgtgg aacgctaacg gcgtctcaca gcacaaactt gagttaactc      1260
     aatttctact cgacaatcac atcgatgtaa tgctactttc agaaacacac cttacaaaca      1320
     gatacaattt tcaaataaga ggctactcat tctatggaac aaatcatccg gacggtaaag      1380
     cacatggtgg gactggcatt ctaatcagaa gtcgtattaa gcaccactat tataacaaaa      1440
     ctgctaaaaa ctatctacag gccacatcta taagcataca actgattacc ggcaaccaac      1500
     taactctagc cgccgtatac tgcccccctc gtttcaatat aaccgaatat gagtttttgc      1560
     agttcttcaa cacattaggt gaccatttta tagcagcagg agactacaat gccaaacaca      1620
     cacactgggg atctcgcctc gtgactccaa aagggaagca gctttacaat gcaatcataa      1680
     aatccaacaa caagcttgac tatgtctctt ctggtagacc aacatactgg ccgacagacc      1740
     caaagaaact acccgatctt attgacttcg cgataaccaa aaatattccc aaaaatctta      1800
     taagcgccga atgcctttcg gatctttcat ctgatcactc gccggtctta tttcatcttc      1860
     tccaacaacc aggaacatta gaacaccagt ttaacctgac ctcacaaaaa accaactggc      1920
     tcaagtttag aaaatatatt agctcacata ttgagctatg tcctcgcctc aacgacgaag      1980
     ccgacataga cagctttgta actacactgg agtccgtact cgtcactgcg gctcgagttt      2040
     ccacacccca aacctcaaat attcaatgca agcaaaagaa gacaaatcta caaatcgaac      2100
     agcttgtcct agaaaagcgg cgcttacgtc gggagtggca attctataga tcgccatctg      2160
     ctaggcagaa cttgaaatac gcctcacggc aactaactaa agctctaaaa caagaagaat      2220
     catatgccca gcgccgttat atagagcaac tgtcatcaac ttgctcaaaa cactcactat      2280
     ggagagccca cccatctctt agctcaccga aagaaaccgt gatgcctatt agaaacccct      2340
     caggcggctg ggcgcgcagc gataaagata gagccagcac attcgccgac caccttaaaa      2400
     atgtctttca accaaatcct gccaccaatg cattcactct gccgactttt gcatatgaca      2460
     cccagcttca ccatgagcca atcgagtttc gcccattgga aatcgttagc atcatcaaaa      2520
     accatatgaa cccgaaaaaa tctccaggct gcgacctcat tacccctaaa atgatcacgg      2580
     agcttccata ttgtgccgtt cgcaccatta cacatctctt caatgccatc gctaaacatg      2640
     gccactttcc aaaaagatgg aaaaagtcaa ttattataat gatttcgaag ccaggaaaag      2700
     accccacaat ccccacatcg tacagaccta taagcctact atcatgctta tctaaactct      2760
     ttgaaaaatg catattgact cggataaaca catatctacg aatccagaat ggaattccat      2820
     cacaccaatt cggatttcga gaaaaacacg gaacgattga gcaggtcaac cgaataacat      2880
     cagaaattcg aaacgcgttc gaaaaacgtg agtactgcac cgccatattt ctggacgtct      2940
     ctcaagcgtt tgatagagtt tggctagaag gcctaatgta caagatcaag acaatgcttc      3000
     ccagcaacac tcacaaactt ttagagtctt atctacacga cagaaaattt gctgtgagat      3060
     gtaacactgc catatctgac gatttttcta ttttggctgg agtcccccaa ggtagcgtgc      3120
     tcgggccaac attatatgtc ctctacacag cagacatccc gacaagcagt cgactgacaa      3180
     catctacttt tgctgatgat acagctatac tcagccgttc aaaatgtcca atacaagcaa      3240
     ctgcgcaact agctcttcac ttggccgacg ttgaaaaatg gctatctgat tggcgaatta      3300
     aagtaaatga acaaaaatgc aagcacgtta ctttcaccct gaataggcaa aactgcccac      3360
     ccctcacatt aaataacacc ctgcttccgc aatcaaacga agtaacgtat ctaggagtac      3420
     atctcgacag aagactcaca tggcgccggc acattgaagc caaaagaaca cacttaaagt      3480
     tgaaagccag tagcctacac tggctcatca acgctcgatc ttcccttagc ttagactaca      3540
     aagtcctgct gtacaactca gtactaaagc ctatatggac gtacggctcc cagttatggg      3600
     ggtatgctag caatagcaac atcgacataa tccagagggc tcaatcaaaa atcctgagaa      3660
     cgatcaccgg ggcaccgtgg tacgttcgca acgaaaacat acatcgtgac ttgaacatcc      3720
     caccagtcaa agcagttatc gcagaacaaa aggataagta cctcaccaag ctatctttgc      3780
     accccaacca ccttgcaaga ggtctaacaa ggttgtgcaa ccaatcccgt cttcgtcgca      3840
     atgacttacc tacccagcga ccaacttgag ggacgcgcaa ccaaaattac agtccactgt      3900
     tagttaatgt ttaactttta agattcgaaa acttattgtt agtctcaaag ctaagagaag      3960
     attcaataaa taaagcaaag ttaaataaaa aaaaaaaaa                             3999
//
ID   Jockey-5_DEu repbase;    DNA;    INV; 1877 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1877
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 951-951 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1693
FT                 /product="Jockey-5_DEu_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ATTRQKNIDTLLEGAGPDNCSDFSIWKLTRGVKRQPI
FT                 VQSPIQSHSRHWLKSDSDKANAFAEHLSDTFTPFDLSDASHRDEVANFVRA
FT                 SIQPARPIRHITPQEVTLQLKALNLKKTPGPDGIDNRAAKALPPKGVLAVV
FT                 KIFNAMLSLGHFPRQWKQARIIMIPKPNKPPTQIDSYRPISLLSTLSKVFE
FT                 RCLLSRLLELPQVEGHIPQHQFGFRKSHGCPEQVHRLVNHITHGLEHKLHT
FT                 VGVFLDVKQAFDKVWHEGLLYKIKELLPAPYFVILRSFLADRTFVVAVRDA
FT                 RSSLAHIHAGVPQGSVLGPFLYTMYTSDMPVPSPTTDARMLLATYADDTAL
FT                 LASHTSQLTASAAVQDWLRAMERWTKQWNIAINCSKSASVTFTLRLTIDIV
FT                 LNFNGDTIRNATSQCYLGVHLDQRLIWNTHITAIRAKCDRKLKKLDWLLSA
FT                 KSLQLSTKVLIINAILTPTWTYAIQVWGTASKHQLNRLRVVQARAARRASG
FT                 LPWYVTNQAIQNDLRLVPVGDLLNQHSSRYSDRLIGHPNPLASRLADPQST
FT                 RRLSRFHPSDLPSRLIS"
XX
SQ   Sequence 1877 BP; 535 A; 502 C; 402 G; 438 T; 0 other;
     agcaacaact cgccaaaaga acatcgatac cctactggaa ggagctggac cggacaactg        60
     cagcgacttt tccatatgga agcttacgag aggagttaaa aggcagccga ttgtccaatc       120
     ccctatacaa agtcatagta gacactggct taaaagcgat tccgacaaag caaacgcttt       180
     tgctgaacat ttgtctgata ccttcacccc ttttgatctc tcagacgcct cgcaccgcga       240
     cgaagttgca aactttgtga gagcctctat ccagccagcg cgccctatta ggcacattac       300
     gccgcaagaa gtcacgctgc aattaaaggc gctcaaccta aaaaagactc ctggacccga       360
     tggcatcgac aatcgagcgg caaaggctct tccacccaaa ggagtgcttg cagtggtaaa       420
     aattttcaac gccatgctga gcctgggtca ttttccgagg cagtggaagc aagccaggat       480
     catcatgatc cctaagccaa acaagcctcc gactcaaatt gattcctacc gtccaatcag       540
     tttattgtct acactatcga aagtgttcga gcggtgttta ctcagtcgtc ttttagaact       600
     acctcaagta gaaggccata taccccaaca tcagtttggc tttagaaaat ctcatggctg       660
     tccagaacaa gtccatcgcc tggtcaatca catcacccat ggactcgagc acaaactgca       720
     cactgtaggc gtcttcctgg atgtcaaaca agcctttgac aaggtgtggc atgagggcct       780
     cctgtataaa atcaaggaac ttctccctgc tccctacttc gtcatcctga ggtcctttct       840
     tgccgatcga acctttgtag tagcagtaag ggacgcaaga tccagcttgg ctcacatcca       900
     cgcaggagtg ccccaaggaa gtgtgcttgg tccatttctt tacaccatgt acacaagtga       960
     catgccagtt ccgtcgccca ctacagacgc ccgtatgctt ttggctacat atgctgacga      1020
     cacggcgttg cttgcgtccc acacatctca gctgacggct tcggctgcag ttcaggactg      1080
     gctgcgtgcg atggagcgct ggaccaagca atggaatata gccataaact gcagcaagtc      1140
     ggcaagcgta acatttacac taaggcttac gatcgacatc gtcttaaatt ttaacggtga      1200
     caccatccgg aacgccacat cgcagtgcta cttgggtgta cacctagacc agcggctcat      1260
     atggaacacc cacatcacgg caatcagagc taagtgcgac cgcaaactta agaagctcga      1320
     ttggctcctg agcgcgaaaa gtctccagct ttcgacaaag gttctgataa taaatgcaat      1380
     tctcacgcca acctggacgt atgcgataca agtttggggc accgcgtcta agcaccagct      1440
     aaacaggctg agggtagttc aggcacgagc tgctagacgg gcttccgggc ttccgtggta      1500
     cgtaaccaac caggccatcc agaacgactt acggcttgtt cccgtgggcg atctcttaaa      1560
     ccaacacagc agccgatact cggacaggct aataggtcac ccaaatcctc tggctagcag      1620
     gcttgccgac ccgcaatcta ctagaagact tagtagattc caccccagcg acttgccatc      1680
     ccgcttaatt tcttaaactt gtaatatttt gtaaatagtt ttattttagt tttgtaaata      1740
     tttgtacata tactctaggt acacccatag taccataact aatttcctga taaacgcccg      1800
     gttatgttca aatgcctgaa cgattccggc gaaataaaaa tgtaaatatg taaaaaaaaa      1860
     aaaaaaaaaa aaaaaaa                                                     1877
//
ID   Jockey-5_DF repbase;    DNA;    INV; 3230 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3230
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 973-973 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated. The consensus is ~98%
CC   identical to that of Jockey-6_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..410
FT                 /product="Jockey-5_DF_1p"
FT                 /translation="VYKELKSRIHQRGSTARTQNNQFIASRSNPEVFFSTA
FT                 ARSSLGPINSAKNVTYASALKSGLATPAPKISLPQSAHQEPNTAQQHQPPE
FT                 QPKSNFESLICSLQQSLTEFMSFMRTTMQDLMRNQNLLIQMLVSQQSK"
FT   CDS           296..3085
FT                 /product="Jockey-5_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQSTTKPYGVYVVYAYNYARSNAKPKSTYTNAGFTTI
FT                 QIMTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSETHLTNKYNFQLR
FT                 GYTFYGTNHPDGKAHGGTGILIRSRIKHHYHTKFAKNYLQATSINIHLNTG
FT                 KQLTLAAVYCPPRFTIAEDEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVT
FT                 PKGKQLYNAIIKAKNKLDYVSSGTPTYWPADPKKLPDLIDFAITKNIPKNM
FT                 ISAECLSDLSSDHSPVLFTLLRHPGTWDHSSKLTSHKTNWVKYRKYISSHI
FT                 ELSPHLSDEANVDSFVNSLESVLVSAARVSTPQTTNTQYIQKKTNLQIEQL
FT                 VLEKRRLRREWQCHRSPSAKQRLKHASRQLDQALQQEETYVHRRYIEQLST
FT                 NSTKHSLWRAHPTMSSPKETVMPIRNSTGGWARSDADRASTFAKHLKNVFQ
FT                 PNPATNAFTLPTLSYEPQPQHEPIEFRPNEIVNIIKRQLNPKKSPGCDLIT
FT                 PKMIIELPYCAVCTLTQLFNAIAKLGHFPVRWKKSIIIMIAKPGKDHTIPT
FT                 SYRPISLLSCLSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVN
FT                 RITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKIKTMLPYSTHKIL
FT                 ESYLYDRKFVVRCNTAISDDYTVGAGVPQGSVLGPILYVLYTADIPTSTRL
FT                 TTSTFADDTAILSRSKCPIQATAQLALHMVDVEKWLSDWRIKVNELKCKHV
FT                 TFTLNRQNCPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKRTHLKL
FT                 KASSLHWLINARSSLSLEYKVLLYNSVLKPIWMYGSQLWGNASNSNIDIIQ
FT                 RVQSKILRTITGAPWYVRNENIHRDLNILPVKEVIAEQKVKYLTKLSVHPN
FT                 HLARGLTRLSNQSRLRRNDLPTQRPT"
XX
SQ   Sequence 3230 BP; 1080 A; 851 C; 583 G; 715 T; 1 other;
     cagtttataa ggagctgaaa agtcgcatcc accagagggg atctactgcc cgcacccaaa        60
     ataatcagtt catagcctcc aggtcaaacc ctgaagtctt cttctcgact gcagccagat       120
     cctcactagg acccataaac tctgccaaaa atgtcacata cgcaagcgct ttaaaatcag       180
     gactggctac cccagcccca aaaatctcac tgccgcaatc agcacaccaa gaaccgaaca       240
     cggctcagca gcatcaaccg ccggagcagc caaaaagtaa ctttgaatct ttgatatgca       300
     gtctacaaca aagccttacg gagtttatgt cgtttatgcg tacaactatg caagatctaa       360
     tgcgaaacca aaatctactt atacaaatgc tggtttcaca acaatccaaa taatgacttc       420
     cctacgaata tctacgtgga acgctaacgg cgtttcgcag cacaaactcg agttagcgca       480
     attccttcta gacaatcaaa tcgacgtaat gctgctttca gaaacacatc ttacaaacaa       540
     atacaatttc caactacgag gatatacatt ctatggaaca aatcatccag atggtaaagc       600
     acacggcggg actggaattt taatcagaag ccgtattaag caccattacc atacgaaatt       660
     tgctaaaaac tacctacagg ccacatcaat aaatatacac ctaaatactg gcaagcaact       720
     aactctagcc gccgtatact gccccccacg cttcaccata gccgaagatg agtttatgca       780
     gtttttcaac tcactcggag accacttcat agcagcagga gactacaatg ccaagcacac       840
     acactgggga tctcgtctcg tgaccccaaa aggaaagcag ctctataatg caattatcaa       900
     agctaagaac aagctagact atgtttcttc tggcactcca acatactggc cggcagaccc       960
     aaagaaactt cccgatttaa tagactttgc gattaccaaa aacattccta aaaatatgat      1020
     aagcgccgaa tgcctttcgg atctttcatc tgaccactcg cctgtcctct ttactctact      1080
     ccgacaccca ggaacatggg atcactcatc aaaactgacc tcacataaaa ccaattgggt      1140
     taagtacagg aagtatatca gctcacacat tgagctgagt cctcacctca gcgacgaagc      1200
     caacgtagac agttttgtta attcactgga gtctgtactc gtctctgcag ctcgagtttc      1260
     aacacctcaa actacaaaca cacaatacat tcaaaagaag acaaatctac aaatcgaaca      1320
     gctcgtcctc gaaaagcgac gcttacgtcg agaatggcaa tgtcacagat cgccatctgc      1380
     taagcaacgc ttaaaacatg cctcacgtca acttgatcaa gctctacagc aagaagaaac      1440
     gtatgtccac cgccgctaca tagagcaatt gtcaactaac agtacaaaac actcactatg      1500
     gagagctcac ccaactatga gctcaccgaa agaaaccgtg atgccaatta gaaattccac      1560
     aggcgggtgg gcgcgcagcg acgcagacag agccagcacg tttgccaaac accttaaaaa      1620
     tgtcttccaa ccaaatcctg ccaccaatgc gtttactttg ccgactctat catatgaacc      1680
     ccagcctcaa catgagccaa tcgagtttcg cccaaacgaa atcgttaaca tcatcaaaag      1740
     acaactgaat ccgaaaaaat ccccgggctg cgacctcata actcccaaaa tgatcattga      1800
     gctcccatac tgcgccgttt gcactctcac ccagctattt aatgccatcg caaaacttgg      1860
     ccactttcca gtgagatgga aaaagtcaat tataataatg atagcaaagc cggggaaaga      1920
     ccacactatc cccacgtcgt atagacctat aagcctactc tcttgcctat ccaaactctt      1980
     tgaaaaatgc ctaatgactc ggataaacac atacctgaga atccaggaag gaatcccgtc      2040
     acaccaattt gggtttcgtg aaaagcatgg aacaattgag caggtcaacc ggataacatc      2100
     cgaaattcgg aacgcgttcg aaaaacggga gtactgtact gccatatttt tagatgtctc      2160
     tcaagcattt gatagagtct ggctagaagg tctaatgtac aagatcaaga caatgctccc      2220
     ctacagcacc cacaagattt tagagtctta cctttacgac agaaaatttg tcgtgaggtg      2280
     caacactgct atatctgacg attacactgt tggagctgga gttcctcaag gtagcgtgct      2340
     aggaccaatt ttatatgtcc tgtacacagc agacatcccg acaagcacac gtctaacaac      2400
     atccacgttt gccgatgaca cagctattct tagccgctca aaatgcccga ttcaagcaac      2460
     tgcgcagcta gctcttcata tggtcgatgt tgaaaaatgg ctgtcagatt ggcgaattaa      2520
     agtgaacgaa ctaaaatgca agcacgttac gttcactctg aacaggcaaa actgcccgcc      2580
     gattacatta aacaacacyc tactcccaca agcaaacgaa gtaacatacc taggagtaca      2640
     tctcgacaga agactcacat ggcgccggca cattgaagcc aaaagaacac acctaaagct      2700
     aaaagccagc agccttcatt ggcttatcaa cgctcggtca tctcttagcc ttgaatataa      2760
     agtcctgctg tacaactcgg tcctaaaacc tatatggatg tacggctccc agttatgggg      2820
     gaacgccagc aatagcaaca ttgacataat tcaaagagtt cagtcgaaga tcttgagaac      2880
     aatcaccggg gcaccgtggt acgttcgcaa cgaaaacata caccgcgact taaacattct      2940
     accagtcaaa gaagtgatcg ctgaacagaa ggtaaagtac ttaaccaagc tatcggtgca      3000
     ccctaaccac ctggcgagag gtctaacaag gttgagcaac caatcacgcc ttcgtcgcaa      3060
     tgacttaccc acccagcgac cgacctgagg gacgcgcaac cagaatgcag tcttagtata      3120
     ctgttagtta aattttaatg ttaagattcg ccaacttatt gttagtctca aaattaagag      3180
     tagattcaat aaataaaagc aaagctataa aaaaaaaaaa aaaaaaaaaa                 3230
//
ID   Jockey-5_DK repbase;    DNA;    INV; 2397 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2397
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1342-1342 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..2234
FT                 /product="Jockey-5_DK_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="QLEKPPATHIVQTPPPVQLTLASQKASGNSKSVRVLT
FT                 ELSSDHLPLLFLLNEEAQFHKGVPRMLPAHADVATFKSFIDAHTVLNTPIA
FT                 TSSDLEAYVDSFTSTIAEAAQRATPPQRQSGVPPTRRAPLLTPEARALLDQ
FT                 KRHLRRQFIVSGDPATKQLLSSVTNRLRRLLAKTRQKNIDTLLEGAGPDNC
FT                 SDFSIWKLTRGIKRQPLVQSPIQSHSGQWLKSDSDKANAFAVHLSATFTPF
FT                 DLPDASHRDEVANFLSAPIQPARPIRHTTPQEVTQQLKALNLKKTPGPDGI
FT                 DNRAAKALPPKGVLALVKIFNAMLSLGHFPRQWKQARIIMIPKPNKPPAQI
FT                 DSYRPISLLSTLSKVFERILLSRLLVLPQVEGHIPQHQFGFRKSHGCPEQV
FT                 HRLVNHITHGLEHKLHTVGVFLDVKQAFDKVWHEGLLYKIKELLPAPYFAI
FT                 LRSFIADRTFEVAVKESRSSLAHIHAGVPQGSVLGPFLYTMYTSDMPVPSP
FT                 TTDARMLLATYADDTALLASHTSQLAASAAVQDWLRAMERWTKQWNIAINC
FT                 SKSACVTFSLRLVIDIVHIFNGDTIRNATSHCYLGVHLDHRLIWNTHITEI
FT                 RAKCIRKLKKLDWLLSSKSLQLSSKVLLLKAILTPTWTYAIEVWGTASKHQ
FT                 LNRLRVVQARAARRASGLPWYVTNQAIQNDLRLVPVGDLINNHSSRYMDRL
FT                 QAHPNPLASRLADPQSLRRLKRFHPGDLSSRLXH"
XX
SQ   Sequence 2397 BP; 652 A; 681 C; 526 G; 536 T; 2 other;
     tgtcctggcc aatgtcaatg tggatattgt agcaactgga gaagccacct gctacccata        60
     tcgtgcaaac gccaccccca gtgcaattga ctttggcatc tcaaaaggct tcaggcaaca       120
     gcaagtccgt tagagtactc accgagctat cttctgacca cctcccgttg cttttcctgt       180
     taaatgaaga agctcaattc cataaaggag tccctagaat gctgccggca catgcagacg       240
     ttgccacttt taagtccttc atcgatgctc acaccgtact caacacacca attgcaacca       300
     gcagcgatct ggaggcatac gttgatagct tcacttccac aattgctgaa gccgcccaga       360
     gagctacgcc acctcagcgc caatctggtg tcccacctac taggagggcg cccttactaa       420
     ctccggaggc aagggcactg ctggatcaaa aaaggcacct cagaaggcaa tttattgtgt       480
     ctggcgatcc tgcaactaag caactactat ctagcgttac caacaggctg cgcaggttgc       540
     tagcgaaaac ccgccaaaag aacatcgata ccctgctgga gggagctggc ccggacaatt       600
     gcagcgattt ttcgatatgg aagcttacga gaggaattaa aagacagccg cttgtccaat       660
     ccccaataca gagccacagt ggccaatggc ttaaaagcga ctctgacaaa gctaacgctt       720
     ttgctgtaca tctgtctgct accttcactc cttttgatct tcctgacgct tcacaccgcg       780
     acgaagttgc gaacttctta agcgctccca ttcagccagc gcgccctatt agacacacca       840
     cgccgcaaga agtcacgcag caattaaagg cgcttaatct aaaaaagact cctggacccg       900
     atggcatcga caatcgagcg gcaaaggctc tcccacccaa aggagtgcta gcgctggtga       960
     aaattttcaa cgccatgcta agcctgggac attttccaag acagtggaag caagcccgga      1020
     ttatcatgat cccaaagcca aacaagccac cagctcaaat agactcctac cgcccaatca      1080
     gcctgctatc tacgttgtcg aaagtgttcg agcggattct tctcagtcga ctgttggtac      1140
     tgccacaagt agaaggccat attcctcaac accagttcgg cttcagaaaa tcccatggct      1200
     gccctgaaca agtccatcgt ctggtcaacc acatcaccca cggactcgag cacaaactgc      1260
     acactgtagg tgtcttcctg gacgtaaaac aagcctttga caaggtgtgg cacgagggcc      1320
     tcctctacaa aatcaaggaa cttctccctg caccctattt tgccatcctg aggtctttta      1380
     ttgccgatcg aaccttcgag gtagcagtaa aggaatcacg atccagcttg gcacacattc      1440
     acgcaggagt gccccaagga agtgtacttg gtccgttcct atacaccatg tacacaagtg      1500
     acatgccagt tccgtcgccc accacagacg ctcgcatgct tctggctaca tacgcagacg      1560
     acacggcctt gcttgcgtcc cacacgtctc agctggcagc ctcggctgca gttcaggact      1620
     ggctgcgtgc gatggagcgc tggaccaagc agtggaacat tgccataaac tgcagtaagt      1680
     cggcttgcgt cactttctct ttaaggcttg tgatcgacat cgtccacatt ttcaatggag      1740
     acactatcag gaacgccacc tcgcactgct acttgggtgt acacttagat caccgcctca      1800
     tatggaacac ccacatcacg gaaatcagag cgaagtgcat tcgtaaatta aagaagctcg      1860
     attggctcct gagttccaaa agcctccagc tttcgtctaa ggttttgctg ctcaaggcaa      1920
     ttctgacgcc aacgtggacg tatgcgattg aggtatgggg tactgcatcc aagcaccagc      1980
     taaacaggct gagggtggtg caggcacgtg ctgctcgacg ggcatccggg cttccctggt      2040
     acgtcactaa ccaggccatc cagaacgacc tacgccttgt tccggtgggc gacctcataa      2100
     acaatcacag cagtcgctac atggacaggc ttcaggcaca cccaaatccg ctggctagca      2160
     ggctggccga cccgcaatct cttagaaggc tcaagagatt ccaccccggc gatttgtcct      2220
     cccgtcttst tcactaatcc ttgtaaatat gtaaaaatat tgtaaatatc tgtatatagt      2280
     ctaggtccat asgaattgta ccatatttta ccaaacctct taaacgccag gtaaagttca      2340
     aatggcattg aacgtttccg gcgaaaataa ataataaaaa aaaaaaaaga aaaaaaa         2397
//
ID   Jockey-5_DMo repbase;    DNA;    INV; 6184 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-6184
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6184 BP; 1870 A; 1423 C; 1163 G; 1728 T; 0 other;
     actatttctg gctaacgtca cggacatcat gtcgattctc attcgactgg atgaagccat        60
     cggccaagtc aattatgacg tcaaacgcac ctccaaccat ggaatcagag tccagtgcaa       120
     ggacatcgcc acttatcgca atctggtaaa gtacttagat gagaataaag ttgaaaacta       180
     cacgtttcag ttgaagtccg agcgaggctt cagagccatt atcagagatc tgcactattc       240
     cactccggac cactatatcc gtgagaaatt agccaattta ggacatcaag ttcgcttctt       300
     gagaggcatt aaatctcgtt tcactaaaga gccgcttgat ctcttcgaag ttgagttagt       360
     tcccagtgct aataatgctg aattcatgca aatcactgcc atcggcaatc agcgcgtcaa       420
     aattgagaag ccgtacaaat ccagcgaagt tgctcaatgc catagatgcc agaaatttgg       480
     gcacactaaa aattattgcc gtcgcccctt tgcctgcgtc aagtgcggcg ataatcatgc       540
     ctccacggac tgtggcagac aaaaaggcga acaaacacca gcgaagtgtg ccaactgtgc       600
     tggcccacac gctgcgagct acaaaggttg cccttcttat aaagaagcgt gcaagaagcg       660
     cgaaaatgaa ggcgtacacc agatagcaaa gctaataaac aatttagcca agcctgctcc       720
     cactgcaact gctcagcgca gtcgctctaa tatgccaaat atgactaata tgccaaatct       780
     tttacagcaa gtcccccctc agtcacgacc gcaaacagtt agtgggccca gctattcggc       840
     tgcccttcgg gcgggtttag aatttgctca gcctgtcggg ccggcagcaa ttagcagcaa       900
     acaacgtcag tccagacaaa aagccacaaa acgtagccaa caacaacagc tcttgcagca       960
     acaacagcgg caggcaagcg cacagcggcc gctgcaacca atgcgtagcc gcagcctgag      1020
     tacgcgccgt aggcgtccac agcacgtaga tgggggtgcg catcctaata gtgggggtgt      1080
     ttattctcat cgtttcgagc agccaataaa tgcgaatatg ccaagcatgc cagtgcaagt      1140
     tagctttaga ttagaggcta aaatagacaa actcattgag atgatgacca ccctcacggc      1200
     ctgcctgttg gcccaatttg gtcccaatga gcgttcaaat gtctaacaat gtatccactt      1260
     ccccaaatgc cagtagacgc agcgctgcac tgcagcctgc tgtatctcaa cgtgtcaaca      1320
     acatcaagat atctttttgg aatgctgctg gtgtcaagaa aaagcttaat gagctcaatc      1380
     tgtatctcgt caagcacgat atagacatta tgcttgtgtc tgagacgcat ctgattgaaa      1440
     gcgatagcat tgctatcaat ggctatatcg tttatttagc aaaccacccc tcaaacagga      1500
     ggagaggagg tgcagctttc ataattaaac aaaatatatg tcattatgct atgcgctgta      1560
     catcaaatga ttcgcatcaa tctgttgaag tttcagtcag cctgcaaaac ggcagacaca      1620
     tcaacattgt agctatctac tgcccgccgc aagccatttg gtctggacaa gatttcaaca      1680
     acctacttac ttctcttggt gatgtcttta tagtaggcgg tgactggaat gcgaaaagtc      1740
     agtggtgggg caacgccaga tcctgtctcc gtggccgcac gctagtaaat agtattctac      1800
     aagtgaattg caacattttg gcaactggat cgcccaccca ctatcctttt aattcacgcc      1860
     aaactccgtc tgccattgac ttcgcgcttt ttaaaggcat cagacgtgaa ttgctggcca      1920
     tcactgactc tttcgagctc agctctgacc atcttccgtt gcaagttcag ctggtcgaga      1980
     agccaatcac tagcaaagca aaaggccatc ttctgcatct gaatgctaac ataagcaaat      2040
     ttcagagcta tctaaacgac aaaatcttgc tcaacaccga gatcagcagt gcggatgacg      2100
     tcgatgatgc tgttaatatc ttcgtcaaaa acattgaaga tgctgcaaac tatgctaatc      2160
     cacaaaaccc gcgcaagtta acgaggacta gatttcgagc aaatagacag actctgcaac      2220
     ttatcgaggc ccgcaagcaa atcaagcgtt atctccttcg aaatcgcaat cctttggcga      2280
     agcagctctg caacaggctg tcgaatcgca tacgcaaaga gcttatagat gctaggcaga      2340
     agtatgagga agagctattt agatctatcg atccaactga tagatatagt atgcagaaac      2400
     tctggcgact gaccaatgaa atcaagcgac agcctgcccc aaatctaccg ctattgaagt      2460
     cctccagtgg caatggctct aacgctcata acgtctggtg caagactact gccgagaagg      2520
     ctgaaacatt tgctgcaagt cttgagcagc gtttccatcc cattgtgacc acgtcaccca      2580
     gtgatctggc tgagattgag gctcaagtta gccagctatc tgcgactcct tcagtcttat      2640
     ttcggccagt cactgcggct gaagtcatca gtcacatcag cacgctagag aacaagaaag      2700
     cggctggtct ggatcaaatt gacaaccaca caattaaagc gctgccaatg aaggctattc      2760
     tgtatcttgt tctgatctgc aacaactctt ttagattggg tcatttcccc tcttgctgga      2820
     agctagcgat ggtgaagatg gtgcataagc ctggcaagcc tacgcaacat gtttcatcat      2880
     acaggccaat aagcctccta tctggcctct cgaagatact cgagtacctg atattgagcc      2940
     gtatgctgga acaagatact cttgtaaatg cgattccaag ccatcaattc ggattccgca      3000
     aggcacattc agctgaacag caattgggtc gagtcaccca gtatattatt aaagcttttg      3060
     atgaccataa atactgctct gctgtctata tggacattaa agaagctttt gatcgagtgt      3120
     ggcatacagg cttgaaatac aaactcaagt cactattgcc gtttgcactc tatcgcattc      3180
     tctgttgcta tctagcagat cgctctttta ttgttgagtg ccacggtgga tgtcgctcag      3240
     gagtcaggca gattcatgct ggtgtgccac aaggcagcct gcttgggcca gttctgtata      3300
     atatatacac cagcgatata ccaagcccaa cttgcttaca tggaattcgt attgccacct      3360
     acgctgatga cgtcattgtt ctctcagcta actatcgaca aacagatgcg cttaatcaac      3420
     agcaagcata catgcatatt ctggccgaat gggcaagcaa gtggtgcatt actattaatg      3480
     caaataaaac tacgcacatc atgcattcac tcagacctat agcgccatac caggctattc      3540
     gcattggcaa cgaaactatt gagaatagca cctcacatcc atatctgggc gttacgttag      3600
     attctagact gcgcttcact caacatgtca ctacggtcgt tactagggtt agggctaggc      3660
     ttaaaaagat agattggctc gtaaataaag atagtaaatt atctatgaaa actaaaacta      3720
     tcatatacaa gcagcttgtt gccccactat ggcaatactc gctacctgta tggggtgctc      3780
     ttctatccga gacccaattc agccgcatta gagtggttca caacaaagct cttagagcca      3840
     tatctggtgc tcagtacttt gtttctaata ctcgcatcag atcctctctg gatatcctat      3900
     ctgcagatga aatattcaac aatctctgca caaagtactt cgacagacta cgtgttcata      3960
     gcaacaacga agctagaaag attgtctatg atccgttcat ccctcagcga ctagctatgt      4020
     ccagatacac gaatctcgtt aacactctgt tggctaacga tatcgctctg cgcagtcagc      4080
     gacaactgca aagagaagct gatgaaaacg ctgaatttag agagagatac cgtcgcctac      4140
     atccgccaga gtatggccca atcacttatc gcgagcacag ccgacgacta attatggagc      4200
     gattcacgag atcgtaccca gatcctcctc gcaaccccaa tgggaatcga cgcaataatg      4260
     ccccaccgat cggccttgct gcacacacac ctgcctcagg ggtggctcaa agtataggcg      4320
     acgcagctgc cttgcagccg cgcctgccta tattccagca gttggcgccg ttaccaccca      4380
     ccatggcctc catgcgccca cccatcatca acctggatga tctaccggac tgatcaagtc      4440
     tactcttccc tagaggcttc aggccagaca tgcaaataag tatcaaatct aattgccatt      4500
     aaaactagtc atttgtatat acaaataaca caattagaaa tcgactattg cactatttac      4560
     atggaagagt aactaaacaa acatataaca acaatttaga tatctattta caacacaaaa      4620
     gtttattttc aacacatttg tatatacata tgtgcatcga acagatatag tggcgcttgc      4680
     gcctacaata tgcaatttaa acgaacttaa aactaactta aattcatgcc ctattggctg      4740
     cggagcccac ttggctaatc ctccttgctg cagtggatgt actctgcaaa gaaaaaatca      4800
     attttaataa tcttttaaca cttttattaa attttgcaaa attcacttac ttgccagtca      4860
     gtttgcaatc tatgcaattc aattgtcttc aatatttgcg ctccctttca ttttgctttg      4920
     cagcagctat atttataaaa agactgcaat taatcagcat taatttataa cattattaat      4980
     atcgtttatt taccttttta tatttatgca ttccaattag cagcatcaaa tttgcatcta      5040
     atgcaattta cgatcagctg actttgttct gttttgattg tgtactccaa taagtacata      5100
     tataaagcca gggatgcatt atcacatgca caattgcact tgcaatatta tgaattgata      5160
     ttgttaaatc aaaattgcta aaatgaattt aaaagctatt ttttatacaa attattaaat      5220
     cctgtgaata ttaaactata tttaattaat ttaaagcaac tatactatag cagcaactaa      5280
     atgaaaacat atgcgatata ttgcacaatt attgctacgc atatacattg tatatatgta      5340
     aactaaactt aatcataatt aaaactacta tatataatta ttaaataaca ttaactttag      5400
     aacttaatat caataatttt agcaaattgt aaattcttat tgctcatagt ctttgacttg      5460
     acatgtatgt aagtactttc gataactcac cgataactat gtaacaacct attgctgcac      5520
     aaacattgta tagtaacagc tgtgcatatt cttttaggca ttgcaactca aatgtaaaca      5580
     agtaaggaaa ataattattt ttattaatct ttattaactt tctgcaatta taactatttt      5640
     tagcttatac tcacaatgga gaaaatgacc agactttgtc tcgacttttc tctaaaattc      5700
     caattagcta ctttgggcta atttctcagt gcatcttgca gatgcttatt aatgaaaaaa      5760
     gaaaattgaa ttatattaat taatgctatc tattactatt gtaaaattta tatcttattt      5820
     atctaattaa tctattatca gctactcaag cactttatta ttattttgta ttatctttaa      5880
     attgctcttt ttatctgtat tatgtaacat taagctgcgc tgttattttt gtgcacttat      5940
     ggccatttaa attaattcat tttatgaaaa gtttcggtaa atattgacct tctgtatact      6000
     tctaagtatc ttataggcgc tactcatatt cttaagaaat gctattgtaa agtattgttt      6060
     gaataaaaag tatctccgtg ctaccttccc ctcgccatgc agctgctggt cagctgatca      6120
     tgtatgaggt aggaagaagc ggagatcatt attgtgtgtt ctctggtaac atacggatag      6180
     aaaa                                                                   6184
//
ID   Jockey-5_DPer repbase;    DNA;    INV; 5081 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5081
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1655-1655 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~75% identical to BS from Drosophila
CC   melanogaster.
XX
FH   Key           Location/Qualifiers
FT   CDS           285..2177
FT                 /product="Jockey-5_DPer_1p"
FT                 /translation="MNANSSSDSRLRNKRTDHERMLLISGKLPCEIRAEYR
FT                 SEAERSTCTETTTTVTFTSATNNTTYTMATATISSICPALSFDSQENSIST
FT                 CPDDTEAKTLRTAAERLLDAQKRRTGKRKNDQTLSSYPKSKRGSGGRDLGV
FT                 SPTTSQQANTNNRFAILDTNIPSDSNNEEVRMNVDADAGNDQMDEHLYEAV
FT                 NTDQCLQGESASSGNQLKGPPKPPQIVVNISNLNDLFDVIKDVANLNNVVV
FT                 KANQGETVRILPKDSDTYRAIVDRFDAIGIEFHTYQLQTEKPHRIVVRDLH
FT                 HSTLNNDITAGFKMLGFEVLHIHNPSSRTNKDEKLNIFFINIKPCAKINEI
FT                 YQVKTLCRQKIRIERMRKSTEIAQCRRCQDFGHTAKYCRRHHNCARCGENH
FT                 QTSQCTRPLDAQPTCIHCSGSHMASYKGCQWYQEFLRRSMGSAKKAINTHR
FT                 TGHVPLNNQVAYAYSTTLPGDQQQFPTLQSSHKKGANRPTIQQHQRNIVQH
FT                 QPLVGTRSNTGASYAAVANGNSNAIPATPAQRRFHSLQAHQPQGLNNQQQN
FT                 SYEVQALLQQQQTQFQQWQQQLQQQQQQQFLMWLQQQQQEQQQHNSQANQR
FT                 LEKLEKMVFELANTIKQWAGSNLQLQNNVSASQ"
FT   CDS           join(2177..4192,4089..4994)
FT                 /product="Jockey-5_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNPLKVLIWNANGISRKAKEVELFAHKNSVDILLLTE
FT                 IRIKRGAAVKIHGYAFYPAFKPSRNNNSVGGVAVLVKTSLRHFPQRVIETR
FT                 SMQMSAVKVATGLGDVEFSAIYCPPRVRIEERHYIDALRACGQRYLVGGDW
FT                 NARHWLWGDTYNSPRGRELAEAISATGAKILATGSPTRYPYVLNHTPSCID
FT                 FAVHHGIPDSRATISQSWDLDSDHLALVISIKTDGIIENPSPHLVTKHTDL
FT                 LAFRQHLERSIQLNVSLNSEEDIEMAVDNITESIHMAAAASTPSHPPTSAA
FT                 YGIVLTREARELLSQKRRLRRRAIRSQDPWDRILWNRAAKQLRNTLRELRS
FT                 NFFEQKLASMDYTVDAGYSLWKTTKSLKRQPFRQIPIRCPNGELARNEEEQ
FT                 ANSFAHHLGDRFTHYQFATEAQYKETKDSLQTPLQMALPIKPARAEEIVEV
FT                 IKSLPRKKAPGIDRVCNSTLKALPTRAILYIVLIFNAMLRMQFFPKQWKIA
FT                 TILMIHKPGKPEDDPESYRPISLLSSLSKVWERLLANRLGGIIKECGILPD
FT                 HQFGFREGHGTVEQVHRLAGHILQAYDDLEYCNAVFIDMQQAFDRVWHIGL
FT                 LSKIKKLFPAPYYGVLRSYLEGRQFMVRFRNTHSTPCQMRAGVPQGSVLGP
FT                 LLYSIYVYCRSTLPKRATYGGPPELEFHRAASLARCFTLSMYTADLPSPSE
FT                 QHMEAPRKALLATYADDIALLYSSKCRLEAADGLQEYLYSLAAWCKRWNLK
FT                 VNPLKTTNPCFTLKALIDHTPPIKLEGVTLDQPEQAKYLGITLDKRLTFGP
FT                 HLKATARKCGQRMQQLRWLINRRSTMSLRAKRAVYVHCVAPIWLYGVQIWG
FT                 IAAKSNYKRIQVLQNRAMRQITNCPWYVRGSTLHRDLNLHTVEEQIGRHTS
FT                 RYSDRPIRHHSMLARRLLPAQAFEAVEEIGFCQNYWANSKFPSQYYNITFF
FT                 IITIYYTILYLYKSSCIKX"
XX
SQ   Sequence 5081 BP; 1540 A; 1242 C; 1102 G; 1189 T; 8 other;
     tgaagtctcg aatcaacttt catagagatc ggttgtgtcg cgcttgtgca aagttgtttt        60
     ctttattctg stttagcgga gcattctctt gtgtgctaaa aatagcatac atcataaatt       120
     cgggtgctgc ttcgtgcggt gtcggcaatt ggacaaaaac aaaaaacaca tttgtgaacg       180
     tttttacaac tttattcact gcccttcggg caagacattc ccctcagtct gcgcacagcc       240
     gcacaagagg ggcaataaaa acttcgctta tcagctacgg tataatgaat gcgaatagtt       300
     catctgactc tcggcttaga aataagcgga ctgatcatga gagaatgctt ctaatatcag       360
     gcaaattacc ttgtgagatt cgtgctgagt accgttcaga ggctgaacgc tctacatgca       420
     cagaaaccac aacaacagta acattcacta gtgccaccaa caacaccacc tacaccatgg       480
     caactgctac aataagcagt atctgccctg cactaagctt tgatagccaa gaaaactcca       540
     tatccacatg ccccgacgac actgaggcaa aaacacttcg cactgctgcc gaacgacttc       600
     tggatgctca aaaacggaga acgggcaaaa gaaaaaacga tcagactttg tcatcctatc       660
     ctaaatctaa acgagggagc ggcggccggg acctgggcgt gtcccccact acaagccaac       720
     aggcaaacac caacaacaga tttgccattc ttgacacgaa catcccaagt gatagtaata       780
     atgaggaagt tcggatgaat gtagatgcag acgctggaaa tgaccaaatg gatgaacacc       840
     tttatgaagc agttaataca gaccagtgtc ttcaaggtga atcagcgagc tctggtaatc       900
     agcttaaagg ccctccaaaa ccaccgcaaa tagttgtcaa tattagcaac ttaaatgact       960
     tatttgatgt cataaaggac gttgcaaatt tgaataacgt tgtcgtcaaa gctaaccagg      1020
     gggaaacggt cagaatcctc cccaaagaca gtgataccta tagagcaatt gtggatcgtt      1080
     tcgatgccat tggaatagaa ttccacacat accaattgca gactgaaaag cctcatagaa      1140
     ttgttgtaag agacctacat catagcaccc taaacaatga tattaccgcc ggatttaaaa      1200
     tgttgggctt cgaggtcctt cacatccata atccaagctc aaggactaac aaggacgaaa      1260
     aacttaatat ttttttcatt aatattaagc cttgtgcaaa aattaacgaa atttaccaag      1320
     tcaagaccct ttgccgccaa aaaataagga ttgaaaggat gcgaaaatcc acagagattg      1380
     ctcaatgtcg tcgatgccag gatttcggcc acacagccaa atactgccgc cggcatcaca      1440
     actgtgccag atgcggtgaa aatcaccaaa cctcacaatg cacacgcccc ctagatgcac      1500
     agccaacctg cattcactgc tctggaagcc atatggccag ttataaagga tgccaatggt      1560
     atcaggagtt tctacgccga tcaatgggct ccgcaaagaa ggcaattaat acgcacagga      1620
     cgggtcatgt ccccttaaat aatcaagtgg catatgctta ctctaccaca cttcctggag      1680
     accagcaaca gtttcctacc ttgcagtcta gtcacaaaaa gggggctaat agaccaacaa      1740
     tacagcagca ccagcgaaat attgttcagc accaaccttt ggtaggcact agaagtaata      1800
     caggagcctc ctatgctgcc gtagcaaatg gtaattcaaa tgcaatacct gctacacctg      1860
     ctcagcgtcg ttttcatagt ctacaagcgc atcagccaca aggattgaat aaccagcaac      1920
     agaattcata tgaagttcag gcactgctac aacaacagca gacacaattt caacaatggc      1980
     aacaacagct ccaacagcag cagcagcagc agtttcttat gtggctacag caacagcagc      2040
     aagaacagca gcagcataat agtcaagcca atcaacgcct tgaaaaactc gaaaaaatgg      2100
     tttttgaatt ggccaacacg attaagcaat gggctggatc taatcttcag ctccagaaca      2160
     acgtttcagc atctcaatga acccactaaa ggttctcatc tggaatgcta acggcatttc      2220
     acggaaagca aaagaggttg agctcttcgc gcacaagaat agcgttgaca ttcttctttt      2280
     gacggagatc agaattaaaa gaggggcagc tgttaaaata catggatatg ccttctatcc      2340
     agccttcaag ccatcgcgga ataataatag cgttggtgga gttgcggttt tagttaagac      2400
     ttcgcttcgt cattttccac aaagggtcat tgagacacgc agcatgcaaa tgtcagcagt      2460
     aaaagtagcc acaggactgg gcgatgtgga gttcagcgcc atttactgcc ctcccagagt      2520
     caggattgag gaaagacatt acatcgatgc actccgtgct tgcgggcaaa ggtatttggt      2580
     tggtggtgac tggaatgccc gacactggct gtggggagac acttacaatt cccctagggg      2640
     gcgagagcta gcggaagcca tctctgctac tggcgctaag atccttgcaa ctggatcacc      2700
     aaccaggtac ccatatgtac tcaatcacac gccgtcctgc atagacttcg cagtacatca      2760
     tggtattccg gattctcgag caacaataag tcagagctgg gatctggact ccgaccatct      2820
     ggccttagtc atcagcatta aaacagatgg cattatagaa aatccaagcc ctcatctagt      2880
     caccaagcac actgatctgc tcgcatttag gcaacatttg gagaggtcga ttcaactgaa      2940
     cgtctcgcta aactctgagg aagatatcga gatggctgta gataacatca cagagagtat      3000
     acacatggct gctgctgcct caacgccctc gcatcctccg acaagcgccg cctatggaat      3060
     agttcttaca agagaggcca gagagctttt gtcacaaaaa aggagacttc gaagacgcgc      3120
     aatccgatct caagacccat gggaccgaat tctatggaac cgggctgcca agcaacttcg      3180
     aaacaccctg agagaacttc gaagcaactt ctttgaacaa aagcttgctt ccatggatta      3240
     caccgtggat gctggatatt cgctttggaa gaccactaag tctcttaaga gacaaccgtt      3300
     cagacagatt cccatccggt gtcccaacgg tgaacttgct agaaacgaag aagagcaggc      3360
     caattcgttt gcacatcatt taggggacag gttcacccat taccaattcg ccacggaggc      3420
     gcagtacaaa gagacaaaag atagtctgca aacacctcta caaatggcct tacccattaa      3480
     accagccagg gctgaggaga ttgttgaagt catcaagtcc ctaccgagga agaaggctcc      3540
     tggcattgac agagtgtgca attccacact gaaagcattg cctactcggg cgatactcta      3600
     catagtgctc atttttaacg ccatgttaag gatgcagttt ttccctaagc agtggaagat      3660
     agcaacaatc ctgatgatcc ataagcctgg aaaaccggag gacgaccctg agtcgtatcg      3720
     gccaataagt ctcttgtctt ccttatcgaa ggtctgggaa aggcttcttg ccaatcgtct      3780
     tggtggcatc atcaaggaat gcggtatctt gccggatcac cagtttggct ttcgggaggg      3840
     acacggcaca gtggagcaag tccacagatt ggcaggacac atcctacagg cctatgatga      3900
     tctagaatac tgcaatgcag tctttattga tatgcagcaa gccttcgata gagtttggca      3960
     tatcggccta ctgagcaaaa ttaaaaaact gttcccagca ccatactacg gtgtcctacg      4020
     atcatacttg gaaggacgtc agtttatggt caggttcagg aacacacatt caacaccttg      4080
     ccaaatgaga gctggagttc cacagggcag cgtccttggc ccgctgcttt actctatcta      4140
     tgtatactgc agatctaccc tccccaagcg agcaacatat ggaggccccc cgtaaggctc      4200
     tgcttgctac ctacgcggac gatatagcac tgctctacag ctccaagtgc cgccttgagg      4260
     cagcagatgg tctccaagag tacctctact ctttggcagc ttggtgcaaa agatggaatt      4320
     taaaagtcaa cccactgaag accaccaatc catgcttcac cctgaaagcg ctcatagacc      4380
     acaccccacc cataaagctt gaaggcgtaa ctttggacca accagagcaa gcaaagtatc      4440
     tcggtatcac ccttgataag cgtcttactt ttggtccaca cttgaaagct acggctcgta      4500
     aatgtgggca aagaatgcag caattgcggt ggctgattaa cagaagaagc accatgtcac      4560
     tgagagccaa aagagcagtt tatgtacact gtgtagcccc gatctggctc tacggtgtgc      4620
     agatttgggg tatagctgcc aaatcgaact ataaacggat acaggtcttg cagaatcgcg      4680
     ccatgaggca aataacgaac tgcccttggt acgtgcgcgg ctccacccta catcgggatt      4740
     tgaatctgca tacagtagag gagcagattg gaaggcacac cagcagatac agtgacaggc      4800
     caattagaca ccatagtatg ctcgccagac gattactacc tgcccaggcc tttgaggcgg      4860
     ttgaagagat tgggttttgc caaaactatt gggccaactc taagtttccc tcccaatatt      4920
     ataatattac tttttttatt attactatat actatactat attatatctc tataagtcct      4980
     cttgcataaa gsmataggtt tggtctcctt gatactattt acctggcgct gttaagatmc      5040
     gataknngca atgtacggat tcaacgctta ataanaaaaa a                          5081
//
ID   Jockey-5_DTa repbase;    DNA;    INV; 4445 BP.
XX
AC   .
XX
DT   14-JUN-2012 (Rel. 17.08, Created)
DT   14-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4445
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1707-1707 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           229..1890
FT                 /product="Jockey-5_DTa_1p"
FT                 /note="3 Zinc finger motifs."
FT                 /translation="MSTARQQQQDERRLSSIRNNAYFCIRADESIVPKKTA
FT                 TLQVNTARARSLSPALLCASGTAPNEPWSXQCPSPDPYDLTSNITTTTSTM
FT                 PVFTTVTSTLTTTTNTTTTTSTAVTQRPASSVLTGKLPFPQQKPTKNANGT
FT                 LIQTGIDRYVQIKRKLSPQSSKKTNASKVLKSNTITVPKNTLTNNRFSILS
FT                 DTDEDNAATQTTTVKKPRPPPIYVRQGNCAELVKKITDLIGANKFYVTSIK
FT                 RGNINETKIQANDEQDYRSVAKYLDEGKTNYYTYQLKSSKGLQVVIKGIES
FT                 TVPTIEIIDGLKEKGFNAKTAINIINRNKIPQPMFKIELTPENMPLNKNEV
FT                 HPIYKLQYLLHRRITVEEPHKRNGPIQCTNCQEYDHTRTYCKLRAVCVVCG
FT                 DAHLTMDCPLNKENQSAKKCSNCGENHTANYRGCRIYKEMKNRLTQKITAA
FT                 RNPAIRQNLPYIPSTTTPGVSFAQALSYNNGSYASVPTPTFKQTTPGLLEQ
FT                 QASNHTSESICVNTSQLPSGIELMLATITKTMGAMQQTLQELVRTQNLLLE
FT                 LLVKQKS"
FT   CDS           1894..4443
FT                 /product="Jockey-5_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 Reverse transcriptase."
FT                 /translation="MITFKISFWNANGISQHKYELMQFLDQYDIDAMLISE
FT                 THLTNKNYFHLTGYTFYSTNHPDGKAHGGTGILIKNRIRHYEMPSFATTYI
FT                 QATAVHLETQSGYLNLASIYCPPRFAITEAEFLNFFDVLGDRFIAAGDYNA
FT                 KHTHWGSRLINPKGKQLYNAIITPRNKLDFISPGKPTYWPTDPNKKPDLID
FT                 FAITRRVPQAHVRVEHLSDLSSDHSPILLHLYDHPQVTERLHSLTTGKTDW
FT                 LKYRKYVSTHINDRPNISCEEDLDNSVEELVNVITLAAQHSTQPITSNKPF
FT                 NSRRASRHIEELLYNKRRLRREWQAHRSPASKERLKIANCMLRKALEAEKN
FT                 RDELSFMKQLSPNSKRYPLWKAKSGICPPIESESPLHTQTGTWARSNEERA
FT                 NTFAHHLENVFKPLPATNSFVLPLISNPEASPQIIYHPEEVTRIIQSQDKK
FT                 KAPGHDLITPKMIVELPNCAIHLLTIIFNSMMNLGYYPQQWRKSVIIMIHK
FT                 AGKDKSQPSSYRPISLLPCLSKIFEKLLLSRIKQYLQAHNAIPMHQFGFRE
FT                 KHGTIEQVNRITSEIRNAFERREYCSAVFLDVAQAFDRVWLDGLIHKIRLI
FT                 LPQSTHTILESYLQKRSFAVRCKDFISDYHPIKAGVPQGSVLGPTLYIIYT
FT                 ADLPTSTLTTTSTFADDTAILSRSKCPLRATQHLADHLVLLEQWLADWRIN
FT                 VNEQKCKHVTFTLNRQTCPSLSLNNIIMPQTTEVTYLGVHLDRRLTWRKHI
FT                 EAKRNHLKFKASNLHWLINARSPLKLEYKILLYNAVLKPIWTYGSELWGNA
FT                 CASNLEIIQRAQSKILRTITGAPWYIRNENIHKDLNIGLVKDELDKAK"
XX
SQ   Sequence 4445 BP; 1560 A; 1078 C; 789 G; 1017 T; 1 other;
     ctgtcaacga catcagacgt atttttgtat cgctccgccg aatgattaca aaatatagtg        60
     aaaataaccg aatttaattc gcgaaaagac gctctgggta ggcatgggta caagtgctcg       120
     tgttgcccat gaaaaatttt agattagtgt gataaattac taatataatc tataaagtat       180
     aaattaaaag ccaacgtgtc agagtgtaag ctctgaaacc taagtaaaat gagcacagct       240
     cggcaacaac aacaagacga acgtcgactt tcgtcaatca gaaacaacgc ttacttttgt       300
     atacgagctg atgagtcaat agtaccaaag aaaactgcaa cattgcaagt gaacacagcg       360
     agagcgcgct cgctctcccc tgcattatta tgtgcaagcg gcacagcacc caatgagccg       420
     tggagtgmcc aatgcccgtc ccccgacccc tacgacctta caagcaatat taccacaact       480
     accagcacaa tgcccgtatt taccactgtg acttcgacac taacaacaac aaccaacaca       540
     acaacaacta catctactgc agtcactcag cgcccggcat cgtcagttct gaccggcaag       600
     ctccccttcc cccaacaaaa acctacgaaa aatgctaacg gaacgttaat acaaactgga       660
     atcgatcgct atgtgcaaat aaaaagaaaa ttaagcccgc aatcttctaa aaaaaccaat       720
     gcatcaaaag tattaaaatc aaatactatc actgtcccga aaaatacgct gaccaataat       780
     agattttcga ttcttagtga cacagacgaa gataatgctg ccactcaaac aaccactgtt       840
     aagaaaccaa ggccaccacc catatatgtt cgtcaaggaa attgtgctga gctagtcaaa       900
     aaaataactg acctaattgg agctaacaag ttctatgtca cttctataaa aagaggtaac       960
     ataaatgaaa ccaaaattca ggcaaacgat gaacaagatt atcgatcagt ggccaaatac      1020
     ctagatgagg gaaaaaccaa ttactatacc tatcaactca aaagtagcaa aggcctacaa      1080
     gtagttatca aaggaattga atcaacagtt ccaaccattg aaataataga tgggcttaaa      1140
     gaaaagggtt ttaatgccaa aacggctata aacataataa acagaaacaa aattccccag      1200
     ccaatgttca agatagaact gacaccggaa aatatgcctt taaataaaaa tgaagttcac      1260
     ccaatctaca agcttcaata tctattgcac cgcagaatca cggttgagga accccataaa      1320
     cggaatggac ccatccaatg tacgaactgt caagaatatg atcatacgag aacatactgc      1380
     aaacttcgcg cagtctgcgt tgtctgcggg gatgcacatt taactatgga ctgccctcta      1440
     aataaggaga accaatctgc caaaaaatgt agcaactgtg gggaaaacca cacggccaac      1500
     tacagaggtt gccgtattta taaggagatg aaaaaccgcc taacccaaaa aataactgca      1560
     gctagaaacc cagccatccg ccaaaatctt ccatacatac catcaacaac gacaccggga      1620
     gtctcttttg ctcaggcgct gagctacaac aacgggtctt acgcttcagt tccaacacct      1680
     acatttaaac aaaccactcc aggattgttg gagcaacagg catcgaacca tacttcggaa      1740
     agtatctgcg taaacacatc ccaattacct agtggtatag aattaatgct ggcaactata      1800
     acaaaaacaa tgggagcaat gcagcaaact ctgcaggagc ttgtgcgcac tcaaaatctc      1860
     ctcctggagc ttttagtcaa acaaaaatct tagatgatta cttttaaaat atctttctgg      1920
     aatgcgaatg gcatttcgca gcacaaatac gagcttatgc agttccttga tcaatatgac      1980
     attgacgcca tgctcatatc agagactcac ttaacaaata aaaactattt tcatcttact      2040
     ggctatacat tttattcgac aaatcatcct gatgggaagg ctcatggagg tactggaatt      2100
     ctgataaaga atcgcattag gcattacgag atgccatcat tcgctacgac ttatattcaa      2160
     gcaacagcag tacacctcga aacccaaagc ggctacctaa acctagcctc tatatactgc      2220
     ccaccgcgct tcgctattac cgaagcagaa ttcctaaact tcttcgatgt attgggtgac      2280
     cgctttatag cagctggtga ctacaatgca aagcacaccc actggggatc tcgactcatc      2340
     aaccccaagg gaaaacaact ctacaacgcg attataactc cgcgaaacaa gcttgacttt      2400
     atttctccgg gtaagcctac atattggcca acagatccaa ataagaaacc tgacctgatt      2460
     gattttgcta tcacaagaag agtgccgcag gctcatgtgc gtgtggagca cttatcagat      2520
     ctatcatcag atcattcgcc catcttgctt cacctctacg accaccctca ggttacagaa      2580
     cggttacatt ctctaactac tggtaaaaca gactggctca aatacagaaa gtatgtaagt      2640
     actcatatta atgaccgccc aaacatttcc tgtgaagaag acctcgacaa ttcagttgaa      2700
     gagttagtga atgttattac actggctgca caacattcca cgcaacctat aacatctaat      2760
     aaaccattta acagcagacg tgcttctagg cacatcgaag aactgctata caataagaga      2820
     aggcttcgtc gagagtggca agcccataga tccccagcct ccaaggagcg cctaaaaata      2880
     gccaactgca tgctccgcaa agcactagaa gctgagaaaa atagagatga actatccttc      2940
     atgaagcaac tctcaccaaa tagcaaaaga tatccactgt ggaaagctaa gtcaggcata      3000
     tgtccaccaa tagaaagtga atcaccccta catacgcaaa caggaacttg ggcccgcagc      3060
     aacgaagaga gggcgaatac atttgcccac cacttagaaa atgtcttcaa accacttcca      3120
     gcaacgaata gctttgtgct gccattaatc tccaatcctg aagctagccc gcaaattata      3180
     taccatccag aagaagttac aagaatcata cagtcccaag acaaaaagaa agcgccgggt      3240
     cacgatctca tcaccccaaa aatgattgta gaactgccaa actgtgcaat acatcttcta      3300
     accataatat ttaacagcat gatgaatttg ggatattatc ctcaacaatg gaggaagtct      3360
     gtcatcataa tgatccataa agccggaaag gacaagtccc agccatcgtc atataggcca      3420
     atcagccttc tgccgtgcct atcaaagata tttgaaaagc tgctcctcag tcgtatcaag      3480
     caatacttac aagcccacaa tgcaatacca atgcaccaat tcggatttcg tgaaaaacac      3540
     ggaactattg aacaagtgaa ccggataacc tccgagatac gaaatgcatt tgaaaggcga      3600
     gaatattgct ccgctgtctt tctggatgtc gcacaggcct tcgaccgcgt gtggctggac      3660
     ggcttaattc ataaaatcag attaatactt ccacaaagca cgcatacaat tttggagtcc      3720
     tacctacaaa aaagaagctt cgcagtgcga tgcaaagatt tcatctctga ttatcatcca      3780
     ataaaagctg gagtacccca aggaagtgtg cttgggccga cattgtatat tatttatact      3840
     gcagacctcc cgacatccac tcttacaaca acctcaacct tcgccgatga tactgccatc      3900
     ctaagtcggt ctaaatgtcc tcttagagca acgcaacacc tagcagatca cctcgtgctt      3960
     ctagaacaat ggctagcaga ctggcgcata aacgttaacg aacaaaaatg taaacatgtt      4020
     acttttaccc taaacaggca aacctgccct tcactatccc tgaacaacat tattatgcca      4080
     caaacaactg aagtaacata tctaggagtc cacctggata gacgactcac ttggcgtaaa      4140
     catatcgaag ctaagagaaa tcatttaaaa tttaaagcca gcaatctaca ttggcttatt      4200
     aacgcccgct cgccattaaa attagaatac aaaatactct tgtataatgc agtcctaaaa      4260
     ccaatttgga catatgggtc cgagctatgg ggaaacgcat gtgccagcaa cttagaaata      4320
     atccagagag ctcaatcaaa gatactgaga actataacag gagcgccgtg gtatatacgg      4380
     aatgaaaata ttcataaaga tctaaacata ggcttagtta aagacgaact cgacaaagcg      4440
     aaaac                                                                  4445
//
ID   Jockey-5_DVi repbase;    DNA;    INV; 7882 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7882
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1946-1946 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Tandem array, likely telomeric.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2636
FT                 /product="Jockey-5_DVi_1p"
FT                 /translation="KSGKPSEEWLNRDPGIVQVQSEDINRVHNEAKRLGYV
FT                 PANMAAAGVTNTSAGENVKRTTERSEIQGDISDETILTCESATSAFSETAL
FT                 SHMFCDSDEDTNWTNAIVGIERRAVGAATTTTGSTCQQVQQQQQTPILAAE
FT                 VPLNDPPFLPESTGAATTTSTRTTTSANVIANLEGNVPPSLQMSTPTLTIA
FT                 TNTNTGDAQKLAPTLSECATGTTSGRLRDAAKVTMAAKINGAKRRVTMPMK
FT                 QQRKVMRAASSLGPNNLQNAMQSNLQPIVRLYNIARPKNNLAKNAMPGGEE
FT                 GNMNMDIDANTSSDGYSEVIISDDEATEQQIGGKQVASEVQEAQPQLGQSI
FT                 KIPTLFVPNVKEIQPLMEKLNNAQGVNKFTTKCTQGDGIRVQCKDFSTYNA
FT                 ILGLLNTENIPMHTHQPRSERGYRVILKHLHSSTPCDWLRTQLGELGYVVR
FT                 YVNVMKHRFSGKPLNIFEIEIEPRVDGGHTKICKLNELGNQHVAVERQHKS
FT                 ADPVQCHRCQAFGHSKNYCRRPFVCLKCAGEHPTTMCAKDRDTIAKCANCG
FT                 EGHIASYKGCAVFKHAQSLININRIRGRQQKKQQQQQQRNTVNMLVQQQQQ
FT                 QQQQQRQQVVNQQQQQCNDDNIQRQRNVQQQRLPNNMQVNGTVQQKPPKQQ
FT                 QRQPESPIRQQASQQRSNPNTNPNTKSMTYSQVARGVGGVKIRNPASRHLE
FT                 KLQEQLRMEQQQKRQQQQHPWQQQEHYRQIQQRHQEQRHPQQQQRNQNQQQ
FT                 RIQNQQQRFPSQQTQQQQQQPTRIVQVPTHNEQSQQQQQHQTPQIDCPLMR
FT                 ALERNANIVEEMGKKIDNLLNVLFKFVANTFKNAQPLHMPMPIQNSTIVEN
FT                 RPIDSDCQMAGSHTMYEANDTNNNE"
FT   CDS           2608..7410
FT                 /product="Jockey-5_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKPMTRIIMNNLNSSPNNLNTTSTTNSNLDAYSGNQV
FT                 GSPFRIAYWNAAGVGNKLLELELFIQRHKIDIMMIIETRINTSANTIISSN
FT                 ALKINGYLTYFATHPDNYKSGGVAILVKNDIKHIALQPISENFMQCAPIAL
FT                 MSSERNKNRIIIAAIYCPPQPKWSSEQFSRLFKHIDDGCNGSSGFMLCGDW
FT                 NAKHTWWGNIRGCKRGKALMDSVHKNRRYNILATGGATHYPYDRRKMPSAI
FT                 DFAVYGGLQNARLRTYTTTDLDSDHLPVHIEMGIEGLNVANMMKGNRKILL
FT                 PVNANIKKFQEYLNRRILLNIEIRSGADIEDAVDILNKNIYEAAADSIREQ
FT                 RHGQDKLYRRTNSGQYRLNGHLRGLIKMKQVYKRQLMLLRCPNARKMYRQV
FT                 QNRLKKELCLSKVNTMNELLKQIDVQDRYKMQKLWRLTNNLKRQPQPNWPL
FT                 KLEIASGSSCRRNGNITWTRSNEEKAEAFACHLEKRFTPNLTNTQVVRNLI
FT                 ADELLELKRKKLEQFEENTDSMSVLPFRPISVSETMLEIDMLELNKSPGMD
FT                 NIDNRVIKSLPEKAVIYLVLIFNCILRYGFFPRQWKCAEISMILKPGKSTG
FT                 EISSYRPISLLAGFSKLFEKLLLNRLFECKEFANAIPSHQFGFRKDHGTEQ
FT                 QLARVTQYILNAYEKRQYCSAVFIDISEAFDRVWHAGLLVKLIKLLPLALY
FT                 NVLESYLAERIFIVKCNDGIKSRPGKVCAGVPQGSVLGPILYTIFSSDMPL
FT                 PRLVMKEYASFEPNKMQLSTYADDTIVMCASQNILEAVNLNEKYLIHLMRW
FT                 AEKWCIKINSSKTAHVMFSTRRLDATLVRLCPMINGQTIENNGRHRYLGLV
FT                 LDRKLTLNIHITQLCIRLRGVHKKLDWLLGKNSRLARNCKAVVYKQLIAPI
FT                 WQYALPVWGALVSNSQIKRIETMQNKILRACMNASWYTRNQTLRDTYGIKS
FT                 VDEVYQLASDRFAKSLSCHPNIEARKLILEPFIPVRLLRPRYTEQLDRCMA
FT                 PLRQQQLTQQREVAEERLPTLLQLEEDEQEAERRAAMLAEWEQRRAMGPPK
FT                 RFDECTINMLRRKLKAGTITRENLMLLIDNQPPQIQWLILPELQHEHLQRQ
FT                 HQELIRTAEPAPGAIIQSAIDTDELQLERSLDMLEQALGQEMDEALIIAGN
FT                 NIQIEMQQRLADNESVQLNTNELQMQHGQRLCGSSTNNTNATNTNNVNNDN
FT                 DSDFDNDEFELFLSTYLQKKAELNPSLVHSVQPGPLSMRRQNNLYPSLVYI
FT                 VQPGPLSLRRQNDLHPSLQPETEPGPLSPRWHNYVHPTMQQQLQPDSLPER
FT                 RQNNTNSEQLPLDLPGLIVERLVDRCPTTQQLMEPGPPEKLEMQLVPVRGQ
FT                 PGPSRPPSMTEHDLQQRQSTPVKRKVENLMLPAKRRCTYQMASIRRRLQGP
FT                 LQDELLPDKRQWQQQRIGQEALAVAGPYPMFFTAAIPEKRKRQFRRTPQCR
FT                 KKARTCLPAHAELVRAPLQTELQWSMAMLRPRRSPNWPTERGPYGIQNAHH
FT                 VHDTFICSDSCLHSGVHKKRQHNPISQRRRRRMRSNAHARLIAHQQMNASA
FT                 PVWRPVHGWRRLAHRKARPLSAIIKSDSNFDINL"
XX
SQ   Sequence 7882 BP; 2606 A; 1628 C; 1867 G; 1781 T; 0 other;
     ataaaagtgg aaagccctct gaggagtggc taaatagaga tcctgggatt gtgcaggtgc        60
     aatctgagga tataaatcgt gtgcataatg aggccaaacg tcttggttat gtgccggcaa       120
     atatggcagc cgctggcgtc actaatacaa gtgcaggtga aaatgtgaag cgcacaacag       180
     agagaagtga aatacagggt gatatttctg atgagactat cttaacttgc gaaagtgcta       240
     cctcagcatt ctctgagacg gcgctttctc atatgttctg tgatagcgat gaggacacta       300
     actggacaaa tgctatagtt ggaattgaga gaagagcggt gggagcagca acaacaacta       360
     caggatctac ttgccagcaa gtgcaacaac agcaacagac gccaattctc gcggcagaag       420
     tgccgctaaa tgatccgcca tttctgcctg agtcaacagg ggcagcaact acaacaagta       480
     caagaacaac cactagcgca aatgtcatag ctaacctaga aggcaatgtt ccgccatctt       540
     tgcaaatgtc aacgcctacg ctgacaatag caaccaatac caacacaggt gacgcgcaaa       600
     aattggcgcc aacgctaagt gaatgtgcaa caggaacaac aagtggtcgc ttgcgtgatg       660
     ctgctaaggt gacaatggcg gcaaaaataa atggcgctaa gcgtagagtg actatgccaa       720
     tgaagcagca gcgtaaagta atgcgcgctg ctagctctct tggccctaat aatttgcaaa       780
     atgcaatgca atctaacttg cagcctattg ttagattata caatattgca agaccaaaaa       840
     ataatttagc caaaaatgcc atgcccggtg gggaggaagg caacatgaac atggacattg       900
     atgccaacac cagtagtgat ggatattcgg aggtaattat ttcggatgat gaagcaacag       960
     agcagcaaat aggcggcaag caggtagcta gtgaagttca ggaagcgcaa ccgcagttag      1020
     gtcaaagtat taaaattcca acactttttg tgcccaatgt aaaagaaatt cagccactaa      1080
     tggagaaatt aaataacgca cagggcgtca ataaatttac aacaaaatgt acccagggtg      1140
     atgggattag agtacaatgt aaagatttca gcacatataa cgccatattg ggcttattaa      1200
     atacagaaaa tatacctatg cacacacacc agccgagaag tgagcgtggc tacagggtta      1260
     tattaaaaca tttgcacagt tcgactccat gcgactggtt gcgtacccaa ttgggagaat      1320
     tgggttatgt tgtcagatac gttaacgtca tgaagcatcg atttagtggc aagccattga      1380
     acatatttga aatagagatt gagccaagag tggatggtgg tcatacaaaa atatgtaaat      1440
     taaacgaatt aggtaatcag catgtcgctg tggaaagaca acataaaagt gctgacccag      1500
     tacagtgtca taggtgtcag gcatttggtc acagcaaaaa ctattgccgt cggccatttg      1560
     tctgccttaa atgtgccggt gagcacccaa caacaatgtg tgccaaggat agggacacaa      1620
     ttgctaaatg cgccaactgt ggagaggggc acattgccag ttacaaagga tgcgctgtat      1680
     tcaaacatgc gcaaagttta ataaacataa atcgtattcg tggccggcaa caaaaaaagc      1740
     agcaacagca gcagcaacga aatacagtca atatgctcgt acagcaacag cagcaacagc      1800
     aacaacaaca acggcaacaa gtagtaaatc agcaacaaca gcaatgcaac gatgataaca      1860
     tacagcgaca acgaaacgta caacagcaac ggctgccgaa caatatgcaa gtcaacggta      1920
     cggtgcaaca aaagcctcca aagcagcagc aacgtcagcc ggagtctcca atacggcagc      1980
     aggcgtctca gcagagatca aacccgaata caaatccaaa cacaaaaagt atgacataca      2040
     gccaagtagc ccgtggtgtt ggtggtgtta aaatccgtaa tcctgcatca aggcatcttg      2100
     aaaagctaca ggagcagctt cgtatggagc agcagcaaaa acggcagcaa caacaacatc      2160
     cgtggcagca acaggaacac tatcgccaaa tccagcagcg ccatcaagag cagcgccatc      2220
     ctcagcagca gcagcgcaac caaaaccagc agcagcgtat ccaaaaccaa cagcagcgct      2280
     tcccaagtca acaaacccaa caacaacaac aacagcccac gcgaattgta caggtgccaa      2340
     cacacaacga gcaatcacaa caacagcagc aacaccaaac tccgcagatt gattgtccgc      2400
     ttatgagagc gttggagcgg aacgccaata tcgtcgagga gatgggtaaa aagattgata      2460
     atttactaaa tgtattattt aaatttgtcg ccaatacgtt taaaaatgcc caaccattac      2520
     atatgcccat gcctatacag aatagtacca ttgtagaaaa tagacctatt gatagcgatt      2580
     gtcaaatggc aggcagccac actatgtatg aagccaatga cacgaataat aatgaataat      2640
     ctgaatagta gccctaataa tttgaataca acttctacca ctaatagcaa cttagatgca      2700
     tatagcggca atcaggtagg cagccccttt aggattgcct actggaatgc tgcaggggtg      2760
     gggaataagt tactagaatt agaactgttt atccaacgcc acaaaattga tataatgatg      2820
     ataatagaga ctcgtattaa tactagcgca aatacaatta ttagctcgaa tgctttgaag      2880
     attaatgggt acctcacata ctttgctacc catccagata actacaaaag tggaggtgta      2940
     gcaatcttag ttaaaaatga tattaagcat atcgctttgc agccaatatc ggaaaatttt      3000
     atgcagtgtg ctccaattgc cttgatgagt agcgagagga ataaaaatag aataataatt      3060
     gcagctatat actgcccacc acagcctaaa tggtcttcag agcaatttag caggctattc      3120
     aaacacatag acgatggatg caatggctca tctggcttta tgctatgtgg ggattggaac      3180
     gctaagcata cctggtgggg caatatacga ggatgcaaac gcgggaaggc gctaatggat      3240
     agcgtacaca agaataggcg ctataatatc ctagctaccg gcggtgccac tcactatcca      3300
     tatgacaggc ggaaaatgcc gtcggcaatt gactttgccg tatatggcgg actacaaaat      3360
     gcgcgactaa gaacgtatac gacgacagac ttagattcgg accacttgcc tgttcatatt      3420
     gaaatgggca tagaagggct aaatgttgct aatatgatga aaggaaatcg taaaatattg      3480
     ctgccagtga atgcgaacat aaaaaagttc caagagtact taaatcgacg catattgcta      3540
     aacattgaga taagatcagg cgccgatata gaggacgctg ttgacatcct aaataagaat      3600
     atatatgagg cagcagcaga ctcaatacga gaacaacggc atgggcagga taaactgtac      3660
     cgacgaacga atagcggaca atataggctt aatgggcact tacgagggct gataaagatg      3720
     aagcaggtat ataaaaggca attaatgctt ttgcgttgtc cgaatgcaag aaaaatgtat      3780
     agacaagtac aaaatcggct aaagaaagag ctatgtctgt caaaagtgaa tactatgaat      3840
     gagttattga agcagattga tgttcaggat cgctataaaa tgcaaaaatt atggaggcta      3900
     acaaataatt tgaaaaggca gccgcaacca aattggccgc taaagttaga gatagctagt      3960
     ggcagtagtt gtaggagaaa cggcaatata acgtggacac gaagtaatga ggagaaggct      4020
     gaagcgtttg catgtcattt ggagaaacgc ttcacaccaa atctgacaaa tacacaggtt      4080
     gtgcgtaacc tgattgcaga tgagctatta gagctaaagc gaaaaaagct ggagcaattc      4140
     gaagagaata cagatagtat gtccgttctg ccatttcgtc cgataagtgt tagcgagact      4200
     atgctagaga tagatatgct agagttaaat aagtctcctg gcatggacaa tattgacaat      4260
     agggttatta aatcgttgcc tgagaaggcg gttatatact tagtacttat attcaattgt      4320
     atattgaggt atgggttttt tcctaggcaa tggaaatgtg cagagatcag tatgatatta      4380
     aagcctggta aaagtacagg agagatatcg tcatatagac caattagtct actagcaggt      4440
     ttctcaaaat tgtttgagaa actgctgctg aataggctat tcgaatgcaa agagtttgca      4500
     aatgctatac caagccacca atttgggttc agaaaagacc atggtaccga gcagcagctg      4560
     gcccgtgtga ctcaatatat attgaatgct tacgagaagc gacaatattg ctcggctgta      4620
     tttattgata tcagcgaagc gtttgaccgt gtatggcacg ctgggctatt agtaaaatta      4680
     ataaaattgc taccacttgc actgtacaac gtgctggaaa gctacttggc tgagcgaata      4740
     tttattgtaa aatgcaacga cggcataaag tcaaggcctg gaaaagtgtg tgcaggcgta      4800
     ccccagggca gtgtgctcgg gcctatacta tatacaatat tttcttcaga catgccacta      4860
     cctagacttg taatgaaaga atatgcatcg ttcgaaccca ataagatgca gctatcaaca      4920
     tatgctgatg acacaatagt tatgtgtgca tcccaaaata tattggaggc agtgaatcta      4980
     aatgaaaaat acttaataca tttgatgcgt tgggcagaga aatggtgcat aaagataaat      5040
     agtagcaaaa cagcgcatgt aatgtttagc acgcggaggc tggatgcaac actagtaagg      5100
     ctgtgtccaa tgataaatgg acaaacgatc gaaaataacg ggcggcaccg atacttgggc      5160
     ttagtattgg atagaaaact gacactgaat atacacataa ctcagctttg cataaggctg      5220
     cgtggagtac acaaaaagct ggactggttg ctgggaaaaa atagtaggct agctagaaat      5280
     tgcaaggctg tggtatataa gcagctgatc gcacctatat ggcaatatgc gcttcctgta      5340
     tggggagcac tggtatcaaa ttcgcaaata aaaaggatag aaacaatgca gaataaaatc      5400
     ttgcgggcat gcatgaatgc cagttggtat acaaggaatc agacgttgag ggatacgtat      5460
     gggataaaaa gcgtagatga agtatatcag ttggctagcg atagatttgc gaagtcacta      5520
     agctgtcatc cgaacattga agctcggaaa ctgatactag agccatttat accagtgcgg      5580
     ctactaaggc ccaggtacac ggagcaattg gatagatgca tggcgccact acggcagcag      5640
     cagttaacac agcagagaga ggtagctgag gagaggttgc caacgctgct gcagctagaa      5700
     gaagatgagc aagaggctga aaggagggcc gctatgcttg ccgagtggga acagaggcga      5760
     gctatggggc caccaaaacg ctttgatgaa tgcacaataa acatgcttcg tcgcaaactt      5820
     aaagcgggca caataactcg cgaaaactta atgctgctaa tcgacaacca gccaccacag      5880
     atacaatggc taattctacc tgagctgcag cacgaacacc tgcagcggca gcatcaggaa      5940
     ctaatacgga cggcagagcc ggccccaggg gccataatac aatcggctat agataccgat      6000
     gaattgcaac tagagcgcag ccttgatatg ttggagcagg cactgggaca ggagatggat      6060
     gaagcgctca ttattgcagg aaataatatt caaattgaaa tgcagcagcg gctcgcagac      6120
     aatgagtcag tgcagctgaa tacaaatgag ctgcaaatgc agcatggcca acggctatgc      6180
     ggcagcagca ctaacaatac aaatgctact aatactaaca atgtaaacaa tgataatgat      6240
     agtgattttg ataatgatga atttgaattg ttcttgtcaa cttacctgca gaagaaggct      6300
     gaattgaatc cctcgttggt acactcagta cagcctggcc cgctctccat gcggcggcaa      6360
     aataacttat atccctcgct ggtctatata gtacagcctg gcccgctctc cctgcggcgg      6420
     caaaacgatc tacatccctc gttgcagcct gagactgagc ccggcccgct ttctccgcgg      6480
     tggcataact atgtccatcc aacgatgcag cagcaactgc agcctgattc gcttcctgag      6540
     cggcggcaaa acaatacaaa ttccgagcag ttgccactgg atttgcctgg gctcattgtg      6600
     gagcgcctgg ttgacagatg tccaacgacg cagcagctga tggagcctgg cccccctgag      6660
     aagctggaaa tgcagctggt gcctgtgcgg gggcagcctg ggccatcacg gccgccatcg      6720
     atgaccgagc atgatttgca gcaacgacaa tcgacgcctg taaagcgaaa ggttgagaat      6780
     ttaatgctgc ctgcaaaacg tagatgcact taccaaatgg cgtcaattcg gaggcgactg      6840
     caagggccgc tccaagatga gctgctgcct gacaagcggc agtggcagca gcagcgtatc      6900
     ggccaggagg cactggctgt ggctgggcca tatccgatgt ttttcacagc agccatacct      6960
     gaaaaacgaa aaaggcaatt tagacggact ccgcaatgta ggaaaaaagc acgtacctgc      7020
     ctcccagcac acgcggaact cgtgcgggcg cccctgcaga cggagctgca atggtcaatg      7080
     gccatgctcc ggcctcgaag aagtccaaac tggccgactg agcgtggccc atatggaatc      7140
     caaaatgcac accatgtgca cgacactttt atatgcagcg actcctgtct gcatagtggt      7200
     gtccataaga agcggcagca caatccaata agccagcgga ggcgtcgtcg gatgcggtca      7260
     aatgcccatg cgaggcttat tgcgcatcag caaatgaatg cgtcggcgcc tgtgtggcgg      7320
     cctgtacatg gctggcggcg cctggcgcat agaaaagcgc gacctctgag cgcaattatc      7380
     aaatctgata gcaatttcga cataaatctg taaaaagaaa tatttataat tagttatatg      7440
     ttaagaaatt aatttttgca aaaatgcgac ttacctctgt taaaaagttt tcgatttcca      7500
     cgttgcgacg ggaaaaaaaa aaaaatgtat atgcagagca catgtagtca aatctaactg      7560
     tatattgcgt agcgttgcca cctatgcagt gttgccacac tgacagtttt aagttgttaa      7620
     agcaatttag tattattagg gaattagtac ttttagtctt ttagtatttt agtataagta      7680
     tttattgtat ttagtacgta agttcaatac agacacattc tatgtgtcta acaacatgtt      7740
     tatagagtta ggatacaatg ttgccaaata atgttcttat atgttgctaa agtgaaagta      7800
     atggaaaaga ataaaacaag tcacggagga atttcattcc actgctgaca tatattgtgc      7860
     tcggatgcac tcaacttaaa aa                                               7882
//
ID   Jockey-5_DYa repbase;    DNA;    INV; 2867 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2867
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1926-1926 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..2794
FT                 /product="Jockey-5_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIVSNLKIGLWNARGLVQKNEELRLFLTDHSIDIMLI
FT                 TETHMRPGLKVYTPGYEQYYANHPSNNAKDGSAIFIKANIRHSQNKSTMRT
FT                 DVQVASLDVPTSGGIIKIASLYLPPNKPWTKNDFDQLLITLGPKCIAGGDY
FT                 NAKHQWWGNLRACSRGKRLQEAIVSSSSEVLATGEPTFYSSNTRLTPTALD
FT                 FFVVNGVPINKLSIETKYDLSSDHLPLVATLSHTPQYKSRKKSLLAPGSSV
FT                 ETFRNVLDRSINLNIDINYPEDIEDAIVTFMDTINVAAALATPGSRNSPTQ
FT                 SRRSILPQNASVLIQLKRRARREFSRTGDARAHNIYKRLSNRLNKVLVKNK
FT                 QDHFDQMLENASPDASTNYSLWKLTNNLKRQVIPKAPIRNPAGGWCGSSQE
FT                 KADIFASSLEDRFKPLNLTPAEHRNRVQTLLDQPFQMALPTNPVTLEEVVT
FT                 QIKMLKPKKSPGEDLLDNRTLKLLPIKAVLFVVLLFNSALRLGHFPNKWKS
FT                 AIITMIPKPGKQPTEVDAYRPISLLPALGKMLERVILERILKLPSVSQAIP
FT                 KWQFGFRKSHGTPEQLHRVTNFALEAMEDKMYTTAVFMDIQQAFDRVWHDG
FT                 LLSKLKTLLTPQLFLIIKSFLSNRQFSVVVDGDKSSTRTISAGVPQGSVLG
FT                 PTLYSLYTSDMPDSWCCTEVEDENILIATYADDTAVMVRSTSMSDATRGLQ
FT                 EYVTAFEGWATKWNIGINCSKCACVTFTKRPLNCSGISMLGSTLRHETFYK
FT                 YLGVILDRGLTFQRHTTMIKKAVLSKAAKMSWLFSPRNKLSLANKVRLYKS
FT                 ILTPIWKYALQVYGITARTNLNKIRVAQSKVVRSLCNSPWYMRTRDIERDL
FT                 NIPKIGDVLRTHAERYMWRLGSHPNTLARRLIHPPRKRRLKRFHPHDLPSR
FT                 LL"
XX
SQ   Sequence 2867 BP; 916 A; 664 C; 583 G; 704 T; 0 other;
     tatttaaatt agtcatggaa acgattgagt ccaacaaagc ttttcgtgat ctagtccacg        60
     ttctgatttc gaaaaaatga tagtctcaaa cctaaaaatc ggattatgga acgcaagagg       120
     gttagtacag aagaacgaag aacttcgact ttttcttact gaccactcta tagacatcat       180
     gctaattact gaaactcata tgcgccctgg actaaaagta tacactccag gctatgaaca       240
     atattatgcc aatcatccaa gtaacaacgc caaagacggt tctgcaatct tcatcaaagc       300
     caatattcgc cacagtcaaa ataaatcaac aatgcgcact gatgtacaag tcgccagtct       360
     cgatgtacca acgagtggtg gtattatcaa aatagcttct ctgtatcttc ctccaaataa       420
     gccttggact aaaaacgact ttgatcagct acttatcaca ttgggcccca agtgtatagc       480
     aggaggggat tacaatgcaa agcatcaatg gtggggcaac ctaagggcat gcagccgagg       540
     taaacgacta caagaggcca tcgtatctag ttctagcgaa gttctagcta caggtgaacc       600
     taccttttac tcatctaaca ctagactgac gccaacagct ttggattttt ttgtcgtaaa       660
     tggggtgcca ataaataaac tttcaattga aacaaaatac gacctatctt cggatcacct       720
     acccttagtt gcaacattaa gccacactcc ccaatataaa tccagaaaga aatccttact       780
     agctcccggc tcctctgtcg aaacatttag gaatgtccta gacagaagca ttaacctaaa       840
     catcgacata aattatccag aagacatcga agatgctata gtgacgttca tggacacaat       900
     taacgtggct gcggcacttg ctacaccagg aagcagaaat tctcctactc agagtagacg       960
     cagtatactt ccacaaaacg cttcagttct catacagctc aaacgaagag ctagacgaga      1020
     attttccaga acaggagacg cacgcgccca caacatttac aaaaggttat caaatcgtct      1080
     taacaaagtc ctggtgaaaa acaaacaaga ccactttgac caaatgctgg aaaatgcaag      1140
     tcctgacgca tcgactaact actcgctgtg gaaactcacg aataacctta aaagacaagt      1200
     tattccaaag gctcccatca gaaatccggc tggtggttgg tgcggctcca gtcaggagaa      1260
     ggccgatatc tttgcaagca gtttagagga tagatttaag ccattgaatc ttactccggc      1320
     agaacaccga aacagggtgc aaacactctt ggaccaacct tttcaaatgg ctctccccac      1380
     aaatcctgtt actttggaag aggtagtaac gcagattaaa atgctcaaac ctaaaaaatc      1440
     gcctggtgag gacctcctag acaacaggac gcttaaactc cttcccatca aagcggttct      1500
     tttcgtagtc ctattgttta atagcgccct aaggctggga cactttccaa acaaatggaa      1560
     atcggcaatc ataacgatga ttccgaagcc tggaaagcaa cccactgaag tagacgcata      1620
     taggcccatt agtcttctac ccgcgctagg gaaaatgttg gaaagggtaa tactagagcg      1680
     catcctcaaa cttccaagcg tgagccaagc tattccaaag tggcagttcg gtttccgaaa      1740
     aagtcatggc actccagaac agctgcaccg agtgacaaac tttgctttgg aggcaatgga      1800
     ggacaagatg tatacaaccg ctgtattcat ggatatacaa caagcctttg atagagtatg      1860
     gcatgatggt cttctaagta aacttaagac ccttttgacg ccacagctat ttcttattat      1920
     caaaagcttt ctatcgaaca gacagttcag tgtggttgtc gatggcgaca aatcgtctac      1980
     gcgtacaatc tcagcaggtg taccccaagg cagtgtttta ggtccgactc tttattcgct      2040
     gtatacctcc gatatgccgg attcctggtg ctgtacagaa gttgaagacg aaaacattct      2100
     cattgcaacc tatgcggatg acaccgcggt aatggtcaga agtacaagca tgagtgatgc      2160
     aaccaggggc ttacaggaat acgtgacggc cttcgagggg tgggcaacga aatggaatat      2220
     cggcattaat tgcagcaaat gtgcttgcgt tacattcaca aaaaggccct tgaactgctc      2280
     aggaatttcc atgctcggct ccacacttcg acacgagacc ttctacaaat acctcggggt      2340
     gattttggac agaggactaa cgtttcaaag gcatacgacg atgatcaaga aagcagtact      2400
     ttcaaaggct gcaaaaatgt cgtggctctt ttcgccgaga aacaaactct cattggcaaa      2460
     taaagttcgc ctgtataaat ccatcctgac cccaatttgg aagtatgcgt tgcaagtata      2520
     cggaattacg gccagaacta atctgaacaa aataagagtt gctcaaagta aggtcgttag      2580
     atcactatgt aactccccct ggtacatgag aaccagagac atcgaaaggg atcttaatat      2640
     tccaaagata ggcgatgtac tgaggaccca tgcggaaaga tacatgtggc gactcggttc      2700
     ccaccccaac accctggcga gaaggcttat ccatcccccg cgaaaaagaa ggctgaaaag      2760
     attccaccca catgatctcc catcgagatt attataaata tttttttttt taaagcttaa      2820
     tttgtaaagt aatgtatata ttgcctatgc ctatgctgta gaaattt                    2867
//
ID   Jockey-5_Hmel repbase;    DNA;    INV; 4133 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4133
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2605..4020
FT                 /product="Jockey-5_Hmel_1p"
FT                 /translation="TKISNYLYPPISMTVREVRRAISLLKNNKSPGFDLIT
FT                 KEILEKLPKNAIVYLTTLFNGIMRVQYFPQLWKVSIVMMVHKAGKPPHTAS
FT                 SYRPISLLPIISKLFEKLLLARITPILTENEIIPNHQFGFRHYHSTIEQVH
FT                 RVCEVIRNTFENKEYCSAVFLDIQQAFDKVWHKGLLCKLKKSIPHSYFLLM
FT                 QSYLSDRIFQVKEDGEFSDFYNIKAGVPQGSVLGPLLYTLYTSDLPETCNT
FT                 TTATFADDTAILASNKDPDLASATLQKGLDRINDWLQKWKIRASSTKXAHI
FT                 TFTLRKKDCPPVRLGNXYXPQSDTIRXLGMHLDRKLTWKKHIKTKXDEVNL
FT                 RYRNMYWLMARNSVLSXDNKLLIYKTILKPVWTYGLQLWGSACNSNILIIQ
FT                 RLQNGILRDIANTPWFITNAEIHEALKINTVKNEIRISAHRYKHRLRNHPN
FT                 ILASDLLNISYHKRLKRHDIQELDSRH"
XX
SQ   Sequence 4133 BP; 1504 A; 936 C; 703 G; 973 T; 17 other;
     ggtgtgaaat ctgttaccga agactgtgtt ggtgtaggaa accaggcatc aacaacagta        60
     aatgctactg gaaaacggaa tctcgttcaa caagctttcc acccaagtct atttataagg       120
     caaagaagtt catcgcttgg aaacatttct aagccagaat ctactcttat gagaaaagaa       180
     actaatgacg aagcttcgtc caaaaaacct ccagactggc aaagagttcc aacatctcgc       240
     atccacaaaa gaaagagaat ttcaaactca ccaccctcag aagctatcaa taccaataac       300
     agcttcagcg ttttgcctat agacttaact gaagaacaat caaaaaaggc gccyaaagat       360
     aaacgaccta gtaaacctcc tccaatattg ttatatggta tagaagacgt taataaatta       420
     actgagctgc ttcgatcaac agccaatgaa gataatttca gcataaaaat aattaacaaa       480
     aatcaactga gaattacatg caaggaakct gaaacctaca aagaaattat ttcagtagtg       540
     cgtgaraatg gattaattgg tcacacattt aatcacaaag accagcgctg ctatagaatt       600
     gttattaaaa accttcacca tacaacccct catagagaca tagagttaga aattgagaag       660
     acaggcaata aggtaaaagg agaaatcata aatgttaaat atggtcctga aagaaaaccc       720
     acaactacct tctttgtaaa tatcgctcct ggacctaaca acagtgcagt taagcaaata       780
     aaacaaatct atcaccaggt ggttacaata gaggacccca agaagagaca caccatacca       840
     caatgtcaaa gatgccarca atatggccac tcaaaaaatt actgcatgcg tccataccgt       900
     tgcgtgaaat gtgcccargc tcacaagact tccgaatgcc caaaaaaaga tcgaactaca       960
     ccagcattat gtgcactctg tgaaggggaa catccagcga actataaggg atgtagcgtc      1020
     tatagagaga ttcttgcgag gcgaaaaccg aagtcaaata aaatggaaac atcctacaaa      1080
     ccagcactcc taacttctca attttctgac gtggaacgta acatacccac caaaaatatg      1140
     aaattcacaa aagaatatac tagagagtca acaacacaac ccacttattc tgaygtactc      1200
     aagaatgtag ataatgaagt cgtttcttct ttaccactca acacagttga acagctactt      1260
     aaaaatcaag ctaaacaatt tgattacctc ttacaacaga tgagtactct tatgagtctc      1320
     ttgactaccc tcgtcaccaa gcttaaataa tgacgctaaa aatagccacc tggaacatta      1380
     acggactagc tccaaataag tgtgaactag aactcctgat taatacccat aaacttgatg      1440
     cagtcctgat ctcagaggca cattgcaccg cgaaaaacat agtcagtatc aaagattaca      1500
     aaacctatgt cacttatcac ccggacggca ctggccacgg tggtactgca atcataatta      1560
     ggaagtctat taaacaccat cctcaacctg aatacaaaac tcaccatatt caatcaacca      1620
     ccgtatctgt ggaagacaag tttggccatt tcaatctctc agcaatctac tgtccaccaa      1680
     ggcacacaat taacagctca atgttcgctg acttcttttc aaccctggga tctaaatttg      1740
     ttgttggagg tgattggaat gcaaaacaca ctcattgggg ctccagattg atatccacca      1800
     aaggcaggca gcttaaattg tgccttgaca ataacaacct ggatgctatc accactggag      1860
     agccaacata ttggcccacc gatccacaaa agaaaccaga cctcctcgat ttcttcgtta      1920
     ctaaaggtct tcgaaaacat tacctaaagg cagagtcatg tcatgatagt agctcagatc      1980
     acactcctgt tctacttact attagcacaa cactaatttg ctatgcgatg cctgaatgtt      2040
     tgtgcagcag acgtacagat tgggggagct tccgggaata tatagataca cacctaaatc      2100
     tgaaaaggtc cctcaagaca ccagaagaaa tagaagaggc agcctttcat ataactaacg      2160
     ttatccaaat ggcgtgttgg gaaaataccc cacccagtac caaccagcaa actcttagaa      2220
     acatatcagc ggacattaaa gaaaaagtgt tagaaaagag aaggcttcgt cgcatctggc      2280
     actatacaag actacctcgc gacaaaactt atttgaataa agccattaaa gaattaaaag      2340
     aaattttgaa cgaggcgcaa aataaaacta tccaggataa gttggaaagt cttaatgcta      2400
     ctttacctcc gaatctctct ttaaagaaga tatctaaaac acttaaggga ccacaagaca      2460
     ctaaataccc gataaaagct actaatggat ggactaagac tgccaaagag aaaagcgaag      2520
     aattcgctaa acatctggcc gacgtattca aaccaaacga agatgtttgc gaagaggcgg      2580
     agagggaagt tgaaaacatt ttaaaccaag atctccaact atctctaccc cccmatatca      2640
     atgacagttc gcgaggttag aagagccata agtctactta aaaataataa gtctccgggg      2700
     tttgacctga taaccaaaga aatactggaa aaactgccaa agaatgccat agtttacttg      2760
     actactcttt ttaatggaat aatgagggtg caatacttcc cccagctatg gaaagtatca      2820
     attgtaatga tggtccacaa agcaggtaaa ccaccacata ctgcgagctc ctacagacca      2880
     attagccttc tgccaataat ctccaaacta ttcgagaaac ttcttttagc cagaataact      2940
     ccaatactca ctgaaaacga gatcatacca aaccaccaat ttgggttcag acactaccac      3000
     tccaccatag aacaagttca ccgagtttgt gaagttataa gaaacacctt cgaaaataag      3060
     gaatattgct ctgcggtctt cctagatatc caacaagcgt tcgataaagt ttggcacaag      3120
     ggtcttctct gcaaactgaa aaaatcaatt ccacatagct actttctgtt gatgcaatca      3180
     tatctgtcag accgcatatt ccaagtcaaa gaggatggag aattttcaga tttttataat      3240
     ataaaagcag gtgtccctca aggytctgtt ctgggcccgt tactatacac attgtacacg      3300
     tcagaccttc cagaaacatg taatacaact accgctacct tcgctgacga taccgctatt      3360
     ctcgctagca acaaagaccc tgacttagca tctgctactc tccaaaaagg ccttgatagg      3420
     ataaacgact ggctbcaaaa gtggaaaatc agagctagtt ctacaaagth cgcacatatc      3480
     actttcaccc ttagaaagaa agattgtcca ccagttagat taggaaacar ctachtacct      3540
     cagagtgata ctatcagata hcttggaatg cacctggacc gcaaactgac ctggaaaaaa      3600
     catataaaaa caaaaagdga tgaagtcaac ttacgataca gaaatatgta ctggttaatg      3660
     gcgcgcaact cagtcttatc cahagataac aaactdctaa tctataaaac catccttaag      3720
     ccagtctgga cttatggtct ccaactctgg ggaagcgcat gcaactccaa cattttaatc      3780
     atacagagac tgcagaatgg tatcttaaga gacatagcca atacaccatg gttcataaca      3840
     aatgccgaaa tacatgaagc attgaaaatc aacacagtaa aaaatgaaat aaggatctca      3900
     gctcatagat ataaacaccg gctaaggaat caccctaata tcctcgcatc tgacctactt      3960
     aatatcagct accataagcg cttaaagcga catgatattc aagagctaga ctccagacat      4020
     tgaaaaggtt gcttccattg ggaagctccc tggcaagaca ttttaccttc tcaccaaatc      4080
     tgctcatagt cagtgactga tcgcagatca tctwaacaaa aaaaaaaaaa aaa             4133
//
ID   Jockey-5_LMi repbase;    DNA;    INV; 2933 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 19.11, Created)
DT   10-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2933
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3151-3151 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           852..2342
FT                 /product="Jockey-5_LMi_1p"
FT                 /translation="TLPSRPWTLNLHFAQNATLPLVTITSHTGTSMLPTSF
FT                 HAALASLYNVILITGFFPDLWKTSRILMFLKPDKPPSDASSYRSISLTSVF
FT                 SKVLETILSRRIHQHLRQHQLLPLSQCGFRPSFSVNDQLLRLVHLLSVQVN
FT                 SRRAAIFVSLDIEKAYDRVWHSGLLFKLQTYALPINYVRLIASFLSNRPSY
FT                 VTVNNSNSRLFYPSAGVPQGSVLSPLLYLLYTADMPQPQPPVHLLQYADDT
FT                 AFLALAPSLARSQHLLQTHLSEFSSWCNQWLLTVNPTKSQAIIIGRTTRSF
FT                 RHHDLYLTFHDRPIPQTTTLRYLGLTLDRSLSWNPHLKTVRQKALSRLNLL
FT                 KLLSGRTWGLNPSTILYTYRSLMRPVLCSFHPAWISAPPSYYKSLQILERH
FT                 ALRLAYRIRLPSPTRILYDLIPFPHLLKFLEHLRILYTSRKIESRHPLVSP
FT                 ILLNPGPLPRLYQHVPPSLHLHTLHILSEGNFHQLPLPDDALRPDIYPSYQ
FT                 P"
XX
SQ   Sequence 2933 BP; 588 A; 1145 C; 430 G; 768 T; 2 other;
     gtgaactccg cggtgggtca gttccccacg ctccgggcga cccgttcccc tcccataacc        60
     cacacacccc gaaagcaaca ccactcctga cgcaatccta gtctctccca acctcctggg       120
     tcgcgtccaa gcggacgtcc ttgaccttat tggcagtgac catgcccccg tactcctcac       180
     cattgacccc cgcggtcggc cagaccgcgc cacccatccc gaaccccctc ctaagatggt       240
     ccatgattac tcccgtgccg actgggatgc caaccgtcgt tccattgaca cctcggttgc       300
     cagccaccct ctccccctcc gcacccccgc cgacatagac catgcctcat ccttcctaca       360
     ccagactgtg ctgatgcgcc aagccatacc ctacaaagcc atccacctcc accccctttc       420
     catakgctgt tctcctactc gtgaatcccg ttatctctac cactccttcc tcaggaccct       480
     gacagggata cactcctacg agaccagcaa ctccaacaac acataagaaa ccttttgaac       540
     gcaagaaacg ccgggacggc gtcagacatg caccgcctta accatgtccc gtcaattcct       600
     ttaaatactg gaagccttcc atcccttact ggcagtcgcc ccccacatac cctctcctcc       660
     acaacaacct tacattcccc tacaatgcca taagatacag cattttgctg actacctctc       720
     caaagttttt kccatacctg acaatcctag atttgactac tcccgcttct ccgacgtcca       780
     tgagcgcaat acctctcctc cgctcgcccc aggattccag tatttggacc acatcccccc       840
     ctcagaacta aacactccca tcacggccct ggacattgaa tctacacttc gcacaaaacg       900
     caacactgcc cctggtcacg atcacctcac atacaggcac ctccatgctt ccgacgtcct       960
     tccatgcagc cctagcctcc ttatataacg ttatcctcat caccggcttc ttccccgacc      1020
     tgtggaagac atcccgtatc ctgatgttcc taaaacccga caaaccaccc tctgatgcct      1080
     cttcctatcg ttctatcagc ctcacctcag tgttcagcaa agtcctggaa actatccttt      1140
     ctcgccgtat tcaccaacat ctccgtcaac accaactcct ccccctatcc caatgtggct      1200
     tccgaccctc cttctctgtc aatgaccaac tccttcgcct cgtccacctt ctatccgtcc      1260
     aagttaattc ccgtcgcgcc gctatcttcg tttccctcga catcgagaag gcctacgatc      1320
     gtgtatggca ttctggtctc ctattcaaac tccagaccta cgcccttccc attaattatg      1380
     tccgcctcat tgcgtccttt ctctccaacc gcccatccta cgtcactgtc aacaactcca      1440
     actcccgttt gttctacccc tccgctgggg tgccccaggg gtccgtcctc tcccccctcc      1500
     tctatctgct atataccgca gatatgcccc aaccccagcc tcccgtccat ctcctccagt      1560
     acgctgacga caccgccttc ctagctctcg ccccctccct cgctcgctcc caacacctcc      1620
     tccagactca cctatccgaa ttttcctcct ggtgtaacca gtggctccta actgtcaacc      1680
     ctaccaaatc ccaggcaatc atcataggtc gtaccacccg ctccttccgc caccacgacc      1740
     tctaccttac tttccatgac cgccccatcc cgcaaaccac cacccttaga tacctaggcc      1800
     tcacccttga ccgttccctt tcctggaatc ctcaccttaa aactgtccga caaaaggccc      1860
     tctcccgcct taaccttctc aagctccttt ccggccggac atggggattg aacccctcca      1920
     ccatcctcta cacctaccgt tccctaatgc gtcccgtctt gtgtagcttt catcccgcct      1980
     ggatatccgc cccgccctcc tactataaat ccctccagat cctagaacgc cacgccctcc      2040
     gcctcgctta ccgtatccgc ctcccttccc ccacgcggat cctatatgat cttatccctt      2100
     tcccccacct tctaaaattc cttgaacatc tccgcatcct atacacctcc cgcaaaatag      2160
     aatctcgtca cccactggtc tctcctatcc tcctgaatcc cgggcctctg ccacgccttt      2220
     accagcatgt tcctccctct ctccacctcc atactctcca catcctatcc gagggtaact      2280
     tccatcagct tcctctcccg gatgacgccc tccgtcctga catatacccc tcctatcaac      2340
     cttagccttc cttgtagatt agtgccacgt ccccctccac ccatcctttt cccttcctcc      2400
     gcttggatcc ccgtcccccc actcccttgg agtccttcca tcccatccca tccccactcc      2460
     gcccccctcc cctccttttc tacccaccgc actttccttc ccctcccctc tccactgcgg      2520
     ggcctgctca gtgattttaa ttctgtgtca gtgattttaa gtgtgcagtg acttagtgct      2580
     tcgagtgtac gtgtgttttt aaaacatcag caaccgccgc acaggcagaa catagtgttg      2640
     ccatgtgttt taaatgtgtc tcttcgtctc gtcgtcatcg ctccgtttct tcaacatgaa      2700
     agttttatcc accgtggttt tttaagttct gaatatgtac attttgtcat ccttttcaca      2760
     gtcattgtca ttccacccat ttatctcacc gtgtctattt ttaaattctt catatattgt      2820
     cacctgtttt tattatttta aatcttctgt tcccatattt gtatgctctc ggctgaagag      2880
     cagcatgtta gctgctgcca gcctgcccct tctgggggtt ttaaaaaaca ata             2933
//
ID   Jockey-5_RPr repbase;    DNA;    INV; 859 BP.
XX
AC   .
XX
DT   08-MAR-2013 (Rel. 20.10, Created)
DT   08-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-859
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3470-3470 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..856
FT                 /product="Jockey-5_RPr_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ITSYRPICLLPLLSKILEKLLLKRLYPLASEQNMIPD
FT                 HQFGFRRHHSTSHQVLRVVDTIATSLERKQYCPSVFLDVAQAFDRVWHEGL
FT                 LFKLREILPHTYYLILKSYLKDRYFRVNCGAADSDIRLARAGVPQGSVLGP
FT                 LLYSLYTADIPQHPNTILSTFADDTAILSPHSDPLIATRTLQTHINHLQDW
FT                 LFKWRIKTNVTKSKFIVFTLRRKILPPIILNQTPVPTVDKVRYLGLHLDKR
FT                 LTWNPHTRLKRQETNQRYKLLARLLDKRSKLNLHNKRLLYLLLL"
XX
SQ   Sequence 859 BP; 253 A; 237 C; 134 G; 235 T; 0 other;
     tattacttcc taccgaccaa tctgcttact accacttctt tccaaaatcc tcgaaaagct        60
     acttcttaaa agactttatc ctttagcgtc agaacaaaat atgattccgg atcatcaatt       120
     cggatttcgg agacatcact caacttctca ccaggtgctt cgcgttgtag acactattgc       180
     tacctccctc gagcgaaagc agtattgccc gagtgttttc cttgacgtcg ctcaggcgtt       240
     cgacagggtg tggcacgagg gactactgtt taagctgagg gagattcttc ctcatactta       300
     ctacctcatc ctcaaatctt acctaaaaga tcgatatttc agagtcaact gtggagcagc       360
     agactctgat atccgtctag ctcgagctgg tgttcctcag ggcagtgtcc taggtcctct       420
     tctttactcc ttatatacag cagacatacc tcaacatcca aataccatcc tttccacctt       480
     tgctgacgat actgcaatct tatctcctca ttccgatcct cttatcgcta cacgaactct       540
     acaaacacac atcaaccact tacaggactg gcttttcaaa tggagaatca aaaccaacgt       600
     tacgaaatca aaatttatag tatttactct cagacggaaa atcctacctc ctatcatctt       660
     gaaccaaact cctgtaccaa ctgtggacaa agtacgctac cttggactgc acctagacaa       720
     acggttgaca tggaatcccc atactagact gaaaagacaa gaaactaacc aacgctacaa       780
     acttctcgcc agactacttg acaaacgttc gaaacttaac ctacataaca aaagactctt       840
     atatctactg ttactgcga                                                    859
//
ID   Jockey-6_BTa repbase;    DNA;    INV; 5288 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5288
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 708-708 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(183..641,518..2041)
FT                 /product="Jockey-6_BTa_1p"
FT                 /translation="MAGVEKDQSTGSDSNPLPANLTLIDQVIHANLNPVLN
FT                 SNQIDASVKTFMINSQKVAKDLSDQNKVLQSENSALAAKFDSFMAQHATIT
FT                 QKDSEYQAIISNLQTQIDELKNSKKLLVVQISPPLVKESLPNLILLRMSLK
FT                 PNIARFQINRVSLNKTSSSSNISSPRQGISTQPNSVKNVTKTQHRKISNQQ
FT                 GQLKLTELPGLAKARRNSVPNLNSKQVLEPNSNLSSVAVSTTNKFDVLQLE
FT                 NMETNENEASLADDDSTTEDDNSDPEFREKRLAYRRQNKKRKRGNSNGKDQ
FT                 GDNTGSSVEPKDKSSSNNSSDKINKVKILPPPPIKIIGIQSFEDVKKILST
FT                 ASEKEEYTIRFISKEIWKVNPNNEDAYRKISELLNNLDVQWYSHANKNTRN
FT                 IKVLCKGLPPSISEEEIMQDLLDKNFKIKNAVCMRKRVVKINQKSASADNN
FT                 KPQEENSIPKKEIKEFELIKIPVHQLDFDYTESIEKIHNIKAIAHTMVKIE
FT                 PLKINPTIVPQCKRCCGFQHTANYCAKTPRCVKCAGRHLSADCIHKGRISN
FT                 PKCANCGAIGHPASYRGCPFAKEFQVARKQLLKNKKNPENNGKNFPQLGNK
FT                 TGMASKPKPLDKSFAQAVAGNKNNESSSQADIINTLLTTIQALNVQIQLLN
FT                 EKIGRLEARSNK"
FT   CDS           join(2072..4657,4661..4966)
FT                 /product="Jockey-6_BTa_2p"
FT                 /translation="MCNSNENVFMSLQNNDDCLFSEQNDAVIDYNDVVRLQ
FT                 STNISSSLNFMAWNCGGLTRMKAEEFNVTLRDFDVDIALLSETWFTKNDFK
FT                 RYFAGYRMYNAMHPANKRRGGSSVLIKEKVKHNLIKIIETEAFQSAVIRIE
FT                 TGLGDFNIASLYTPPRNILSTEDYTNFLSELGISYLVGGDWNAKDPRWGSR
FT                 ISNPKGSSLLEAVNLANGNFITPGKPTNFPYDPKHSPDLIDFFVYNNLDLI
FT                 DKTMCDTLPPPLTGHAKVSLSIFTSPILANRPPMLCSKKTNWDKFRQDLDQ
FT                 MINNGVPVTSPDDIDKEAELLVEQIQICAKANTPIAVNNSKPYTIPRELLK
FT                 LIRFKRKAQRIAVNSKLPVDKTEYNRLNKIVKKRTQEFLNNKFENFINSLS
FT                 AKADKDYSLWAATKYLKKPKLLKFPIKKSDGSWANSDSEKSEVLADHFEAA
FT                 FQPHSGIEPDTSDSDDVPTGSSDSESQVQGEVSTSKPRKKFRKIPPVKIKS
FT                 ISPSEIIKEIKGKIKAKKAPGFDKISGIILKNLPKKAIMKLVGIFNAVIRC
FT                 KYFPSQWKTAEIFVLLKPDKPPNEAASYRPISLLPVISKLFEKLYIKRLNE
FT                 IVNKQNLIIDAQFGFRAKHSTVDQLHRVTKFIEDSLERGEYCVAVFLDVAQ
FT                 AFDRVWHERLVEKLYKMLPCNHVDLLSSFLSGRQFRVRYENSTSSFRPIRA
FT                 GVPQGSCLSPLLYSLFTTDIPQSGRGGKLGVYADDTLVLASSRSYREARFT
FT                 AQTHLNKINKWTKKDKTKLNASKSVEVVFTNRPFTHIPLLLGETQIPNDNI
FT                 AKYLGLHLDSRLRWGAHIKKKVAQLRLKFSNMQWLLGRKSRLSLHLKLLLY
FT                 KSMLRPVWSGCQLWGCAAKSNLDKIEVMQMKILRSIVKAKWYERNADIRAD
FT                 LNIESVEDYITKMYSAYEMRLHRHPNQEALALLERDRCSRRLKRRKPYELG
FT                 IQGFSKLFP"
XX
SQ   Sequence 5288 BP; 1830 A; 1099 C; 955 G; 1404 T; 0 other;
     cagtgctgtc tgataagccg ttgcgacaag tctctctcag tccagcgctc cctctaatca        60
     tagtgataaa tcttaagtgc ttttctctat gctgcttgca gcgtatttcg tgcttctcga       120
     acgctaaaac ttcctaaaat agtgttttta aaactcaagt tttaaaacta ccccccctga       180
     aaatggcggg ggtagaaaaa gatcaatcca ccggatcgga ttctaatcct ttgccagcta       240
     atttaacact gatagaccaa gtgatacatg caaatttaaa cccggtttta aatagcaatc       300
     aaatcgatgc atcagtgaaa acttttatga taaattcgca aaaagttgca aaagaccttt       360
     cggaccaaaa taaagttctc caaagtgaaa acagtgcgct tgcagcaaaa ttcgactctt       420
     tcatggcaca acatgccact atcactcaaa aggacagtga gtaccaggct ataatttcta       480
     acctacaaac tcaaatagat gaactgaaaa actctaaaaa acttctagta gttcaaatat       540
     ctcctcccct cgtcaaggaa tctctaccca acctaattct gttaagaatg tcactaaaac       600
     ccaacatcgc aagatttcaa atcaacaggg tcagcttaaa ttgaccgagc ttccaggact       660
     agcaaaagca cgtaggaact cggttccaaa cctaaattct aaacaagttt tagaacctaa       720
     ttctaattta agttcagttg cagtatctac aaccaacaaa ttcgatgtac tccagttgga       780
     aaacatggaa acaaacgaaa atgaagcctc cctcgcagat gatgattcaa ccacagagga       840
     tgacaactca gatcccgaat ttagggaaaa acgtctcgca tacaggaggc aaaataagaa       900
     acgcaagcgt ggaaattcca atggaaaaga tcaaggcgac aatactggtt catctgtaga       960
     acctaaggat aagtctagct ctaacaactc tagtgataag ataaataaag ttaagatact      1020
     accccctccc cccattaaaa ttataggtat tcaatctttt gaagatgtta aaaaaatttt      1080
     aagtacagct tctgaaaaag aagaatatac aatccgcttt atcagcaagg aaatctggaa      1140
     agtgaacccc aataatgagg acgcttatcg taagatttct gaacttttaa ataatttaga      1200
     tgtacaatgg tactctcatg cgaataagaa tactcgcaac attaaagtat tatgtaaagg      1260
     tcttccacct tcaatttctg aagaagaaat aatgcaggat cttttagata aaaatttcaa      1320
     aataaaaaac gcggtatgca tgagaaaacg cgtagttaaa attaatcaaa aatctgcgtc      1380
     agctgataat aacaaacctc aagaagaaaa ttccatccca aaaaaggaaa ttaaagaatt      1440
     cgaattaatc aaaattcccg tacatcaatt agattttgat tacacagaat caattgaaaa      1500
     aattcataac attaaggcaa ttgcacatac catggtgaaa attgaaccac tcaaaattaa      1560
     ccctactata gtacctcagt gcaaacggtg ttgtggtttc caacataccg caaactattg      1620
     tgcaaaaacc ccccgatgtg tcaaatgtgc tggtagacat ttatcagctg attgcatcca      1680
     caagggtaga atatccaacc caaaatgcgc caactgcggt gccattggtc acccggccag      1740
     ctaccgcggt tgtccttttg caaaggaatt tcaggttgcc aggaagcaat tactgaaaaa      1800
     taaaaaaaat cctgaaaata atggaaaaaa ttttcctcaa ttaggaaata aaacgggtat      1860
     ggcctcaaaa ccaaaacctc tagacaagtc ctttgcacag gcagtggcgg gcaataaaaa      1920
     taatgagtca tcctctcaag ctgatatcat caatacctta ttaacaacga tccaagcact      1980
     caacgtgcaa attcaactct taaatgagaa aattggacga ttggaagctc gttccaataa      2040
     ataaaatgac tcattttttc atttccttta tatgtgtaat tctaatgaaa atgtctttat      2100
     gtctcttcaa aataatgatg actgtctttt ttccgagcag aacgatgcag tcattgatta      2160
     caatgatgta gtacggctac aatctacaaa catctcatca tcattaaatt ttatggcatg      2220
     gaactgcggc ggcctgacac ggatgaaggc cgaggaattc aatgtcacgc ttagggattt      2280
     tgatgtggac atagccctcc tgtcggagac ctggttcacc aaaaacgatt ttaagaggta      2340
     tttcgcgggg tacaggatgt ataatgcgat gcaccctgca aataaacgtc gaggtgggtc      2400
     ctcggttcta atcaaagaaa aagtaaaaca taatttaata aaaattattg aaacagaagc      2460
     ttttcagagc gctgtgatta gaatcgagac tggcctcggc gattttaata tagcgtcgct      2520
     ttatacaccg ccccgaaaca tcttatctac tgaagattac accaacttcc tgagtgaact      2580
     aggtatctcc tatctggtag gaggagattg gaacgccaag gatcctcgct ggggttccag      2640
     gatctcgaat cccaagggat cctcgttatt agaagcggtt aacctggcaa atggtaattt      2700
     cataaccccg gggaagccaa ctaatttccc atatgatccg aaacattcac ctgatctcat      2760
     agacttcttt gtatataata atttagattt aattgataag acaatgtgtg atacgttacc      2820
     tcctccatta actggtcatg ctaaagtttc gttatctatt tttacaagtc ctatcttggc      2880
     aaatcgccct cccatgttat gttccaaaaa gacaaactgg gacaaatttc gtcaggattt      2940
     agatcaaatg atcaacaatg gcgttccagt cacttcccca gatgatattg acaaggaagc      3000
     tgagctgttg gtcgaacaaa tacaaatttg tgcaaaagct aacactccta ttgcagtaaa      3060
     taattctaaa ccttatacca ttccaagaga actattaaaa ctaattagat ttaaacgaaa      3120
     agcacagcgg attgcagtca actctaaact cccagtagat aaaactgaat ataacagact      3180
     caataagata gtcaaaaaac gcacccaaga atttcttaac aacaaattcg aaaacttcat      3240
     aaactcactt tcagcaaaag ccgataaaga ctactctctc tgggctgcaa caaagtacct      3300
     caaaaagcct aaactcctga aatttcccat caaaaaatca gatggctcat gggcaaactc      3360
     agactcagaa aaatctgaag tattagccga ccatttcgag gcggccttcc aacctcattc      3420
     tgggatagaa ccagacactt ctgattcaga tgatgttccg accggcagct cagactccga      3480
     atcacaggta cagggggagg tgtcaacatc aaaaccccgg aaaaagttca gaaagatacc      3540
     tccagtcaag attaagtcta tctccccttc agagatcatc aaagaaatta aagggaagat      3600
     taaagctaaa aaagcccctg gtttcgataa aatatctggt ataattttga aaaacctccc      3660
     aaaaaaggcg atcatgaaat tggtaggaat ttttaacgca gttatcagat gcaaatactt      3720
     cccatctcag tggaaaacgg cagagatttt tgtgctctta aagccggata aaccccctaa      3780
     tgaagcagcg tcctaccgac caatttcatt gttacccgta ataagcaaac tttttgaaaa      3840
     actttacata aaaagattga atgaaatagt taataaacaa aacctcataa ttgatgctca      3900
     gttcggcttc agagctaaac attcaactgt ggaccaacta caccgagtca ctaaatttat      3960
     tgaggattct cttgaaaggg gagaatactg tgtggcggtt tttctggacg tggctcaggc      4020
     gtttgatcga gtctggcacg agcgtcttgt tgaaaaatta tacaaaatgc tcccatgtaa      4080
     ccatgtggat ctcctgtctt ctttcctttc aggaagacaa tttcgggtaa ggtacgaaaa      4140
     ttctacttca agcttcagac ctataagggc aggagttcca cagggttcct gtctttctcc      4200
     tctactctat tctcttttca ccacagacat cccacagtct gggagagggg ggaaactggg      4260
     agtttacgcc gacgatactc tcgtgctagc ttcatctcga agttacaggg aggcacgttt      4320
     tactgctcaa acacacttaa acaaaattaa taaatggact aaaaaagata agactaaatt      4380
     aaatgcgtct aaatcagttg aagtcgtttt tacaaataga ccatttactc acattcccct      4440
     tttgttagga gaaactcaaa tccctaacga taatattgca aaatatctcg gcctccacct      4500
     ggattccagg ctcagatggg gcgctcatat taagaaaaaa gtcgctcagc tgcgactaaa      4560
     attctcgaac atgcagtggc tcttggggcg caaatcacga ctttccctac atctaaagtt      4620
     gctcctctac aaatcaatgt tgaggccagt ttggagttaa ggttgccaat tgtggggttg      4680
     tgcagccaag tcaaatctag ataaaataga agtcatgcaa atgaaaatct taagaagtat      4740
     agttaaagcc aagtggtacg agaggaatgc agatattcgc gctgacctca acattgaatc      4800
     tgtggaggat tacatcacca agatgtactc tgcatacgag atgagattgc accgtcaccc      4860
     caaccaggaa gcgcttgcgc tcctggaacg ggatcggtgc agtcgcagac tgaaaagacg      4920
     taagccctat gagcttggaa ttcagggctt ctcaaaactc tttccataaa acaagcgtgc      4980
     ccccccatac cttcggatgg atcagggatt cttgggtctt tggccggaaa cggtcgaccg      5040
     tagtctcaat aaaataaaat aaaatagaag acgataatcg ataagacaaa aagacatttt      5100
     tatttacaga aataatagtg tatttttaat ctcctcattg taaagaggta gtatgttttt      5160
     atttaagata taatgtatta tgatagttaa gttaatctta cagttaaact aagcttaaaa      5220
     agacatttta acatgtctat aagtgtatat tgtacaaaat tttgattatt gtgcaaataa      5280
     aaaaaaaa                                                               5288
//
ID   Jockey-6_CQ repbase;    DNA;    INV; 4391 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4391
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 117-117 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..1474
FT                 /product="Jockey-6_CQ_1p"
FT                 /translation="MKPNVRLKGGSAKNSNLTSQRVVNAAKNSRIQRQNMF
FT                 ESGRRTRSLDRITPGGSSSGSGGYQTRSKTNGSSPFLSQNCFDALGDDDAG
FT                 DGVQGEPEKKQPRVRIPPIHIMGKSVGEVVKLLATNGVPQSDDYWLKYTKT
FT                 SVQFQTKVKELFTKTTALLKSSDVQFFTHDTSEDAPTKFVLSGLPAVSIPD
FT                 LKEELEAMGILPLDIKVLSSKKSGADEHTLYLVYFKRGTVKIQDLRRTKAI
FT                 FNVVVSWRFFSKHPNDAAQCHRCQQFGHGSSNCNLRPKCVKCGGKHLTDVC
FT                 MLPRRAELNNNNNSKSQLKCANCGGSHTANFRGCPARKAYLDELEKRKKKP
FT                 SRPAPPPSGPAPGRNSGAQGGPTHRSSFAATGRPTYAQVSSMNTPPCANLS
FT                 DGEGLFTVTEFLSLARDMFSRLVGCRTKQQQFDALAELMAKYLYG"
FT   CDS           1470..4145
FT                 /product="Jockey-6_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGSLSHQLKIVNWNSRSVLLKKIEFFDFLSRHQVDIA
FT                 TVSETWLKTKNSFHHPDYRCFRSDRTSTDDERGGGVLIALRKSLNVDYSVL
FT                 DLNTSAIEAVGLEIRFPTQTVHFIAAYFPGIHRGAAWSTFRRDINTLVRRP
FT                 VPFFVAGDFNARHRQWNCLKANRAGNFLASRAVSSDFFIHAPRSFTYQPPG
FT                 GRRPSTLDIVLSNNLVNMSSLTVVNDLSSDHLPVLFSVDVAVPFQRFPTTT
FT                 RCYNRANWPAFQRIVNEKIDLNSPVATNLDSPAGINRCIEFFTSTLLEAEA
FT                 AAVPVVPVRTYEDAKFPESARQLVTLRNTRRRQWYRTRDPLLGAIVESLNN
FT                 RIRFECSIARNQHFSNNIRYLENGAKDVWKISKALRKQVKYSPPLQAGDTL
FT                 KASPEEKANLLADNFARAHRNPSPGDPTTSSAVEASVQQIADSTIPVESVP
FT                 VVRPKEIARIIKSLKPKKAPGKDNIRNTLLKRLPRKGLVMLTLIVNACLRT
FT                 SYFPSSWKHAIVTAIPKPGKDITNPTNYRPISLLPVMSKILERVVLTRIGN
FT                 FVEQRNVVPPQQFGFKRGHSTNHQLARLTRNVKSSLARGESAGMVLLDVEK
FT                 AYDSVWQDAILHKMKLAGFPAYILKLLNSFLKQRSFQVAVDGALSRRHEIP
FT                 FGVPQGAVLSPALYNIFTSDLVMVDGVEYYLFADDTGFVAADKSAEVIIEK
FT                 LQAAQDSLESYQRKWRIKINPAKTQAIFFTRRRAERFLPQSRVLALGHEVP
FT                 WSDEVKYLGLALDPKLKYDKHIDAALQKCDKLTRMLYPLVSRRSRLSNANK
FT                 LLLYKLIFRPTLTYGFPAWHSCASTRRKKLQTRQNKILKMMLDLPFNFPTD
FT                 ELEEAANTESLETWTSKLLQRFWTSCTMSENTLISSLVP"
XX
SQ   Sequence 4391 BP; 1060 A; 1273 C; 1155 G; 903 T; 0 other;
     aattgggcat ccctagttgg atgactgttt acaagcctcc gagtgctccg cgatttttat        60
     cgattttctt gttgaaatcg acgttagatt tcgcgttccg ccgtcgtcga gtaaaccggt       120
     agccctggcg aaccaggaca agtggtggaa gcacggtatg aagccgaacg tgcggcttaa       180
     aggcggttct gctaagaaca gcaacctaac ctcacagcgt gtggtgaatg cggcaaaaaa       240
     ctcccgtatc cagaggcaga acatgttcga gagtggccgg cgaactcgtt cgctggaccg       300
     gatcacgccc ggcggcagca gcagcggcag cggcggctac cagaccagga gcaaaacaaa       360
     cggcagctcc ccgttcctgt cacaaaactg tttcgacgca cttggtgatg acgacgctgg       420
     agacggcgta caaggagaac ctgaaaagaa acagccccgg gtaaggattc caccgatcca       480
     cattatgggt aagtcggtcg gagaagtggt gaaactcctc gccacgaacg gtgttccgca       540
     gagtgacgac tactggctga agtacaccaa aacatcggtg cagttccaga caaaagtgaa       600
     ggaattgttt acgaagacga ctgcgctgct gaaaagtagt gatgttcaat tcttcacaca       660
     cgacacatcg gaggatgccc cgacaaagtt tgtgctttcg ggtctgccgg cagtgagtat       720
     tccggatctg aaggaggagc tggaggcaat ggggatcttg cctctggaca tcaaggtgct       780
     gtcctcaaaa aagtcggggg cggatgaaca tacgttgtac ctcgtgtact tcaagcgcgg       840
     gacagtgaaa attcaagact tgcggagaac gaaggcgatc tttaacgttg ttgtttcgtg       900
     gcggttcttc tcgaagcacc ccaacgatgc tgcccaatgc caccggtgtc agcaatttgg       960
     ccacgggtca tcgaactgca acctgcgccc caagtgtgtg aagtgcggcg gaaaacacct      1020
     gacggatgtc tgcatgcttc cgaggagggc ggagttgaac aacaacaaca acagcaagtc      1080
     gcaactgaag tgtgcgaact gtggcggaag ccacaccgct aatttccgtg ggtgcccagc      1140
     tagaaaagcc tatctcgacg agctcgagaa aaggaagaaa aagccctctc gcccagcgcc      1200
     gcctccgagc ggccctgccc caggccgaaa cagcggagcc caaggtggac ctactcatcg      1260
     gtcctcattc gctgcaaccg gacgacccac ctacgcgcag gtgtcgtcca tgaacactcc      1320
     accgtgcgct aacctttccg acggcgaagg tctcttcacc gttacggaat tcctgtccct      1380
     tgccagggac atgtttagtc ggctcgttgg ctgccgcacc aagcagcagc aattcgacgc      1440
     gctcgcagaa ctgatggcca aataccttta tgggtagttt gagccatcaa cttaaaatcg      1500
     ttaattggaa cagcagatcc gttctgctga aaaaaatcga gtttttcgat tttttgtcgc      1560
     ggcaccaagt cgacattgca acagtctctg aaacctggct caagactaag aattcgttcc      1620
     atcatcccga ctaccgatgc ttccgatccg acaggacgag tactgacgac gagcgaggcg      1680
     gcggtgtcct cattgccctg cgaaaaagcc tcaacgtcga ttattcggtg ctggacctca      1740
     acacgagcgc catcgaagcg gttggcctag aaatccgatt ccccacgcaa accgtccact      1800
     tcattgcggc ctactttcct ggaatccacc gtggagctgc ttggagcaca ttccggcggg      1860
     acattaacac actggtgcgg cgccccgtgc cgtttttcgt tgctggagat ttcaacgcgc      1920
     gccatcgaca gtggaactgt ctgaaggcga acagagctgg aaacttcctg gcgtctcgtg      1980
     cagtttcttc ggacttcttc atccacgctc cgaggtcgtt cacctaccaa ccccccggcg      2040
     gccgccggcc gtcaacgctt gacattgttc tctccaacaa cttggtgaat atgtcatcgc      2100
     tgaccgtagt gaacgacctg tcgtccgacc atctgcctgt tctcttcagc gtggacgtag      2160
     ccgtgccctt ccaacgcttc ccgacaacga ccagatgcta caacagggcg aactggccag      2220
     ccttccagcg catcgtgaac gagaaaatcg acttgaactc ccccgtcgca accaacctgg      2280
     acagccctgc aggaatcaac cgatgcatcg agttctttac aagcacgcta ctggaggccg      2340
     aagccgccgc cgtccccgtt gtaccggtga gaacgtacga agatgccaag tttccggagt      2400
     ccgcgcgcca gcttgtcacc ctgagaaaca cgcgccggcg ccagtggtac cgcacacgcg      2460
     atccactgct cggcgcgata gttgagtcgc tgaacaaccg gattcgcttc gagtgttcta      2520
     tcgccagaaa ccagcatttt tcgaacaaca tccggtacct ggagaacggc gccaaggatg      2580
     tctggaagat cagcaaagcg ctccgtaaac aggtgaagta cagcccgcct ctccaggctg      2640
     gcgacacgct gaaggcatcc ccggaagaga aggcgaacct gctggctgac aattttgcac      2700
     gagcgcatcg caacccttct cccggcgacc cgactacgtc cagtgctgtc gaagcgagcg      2760
     tacagcagat cgccgacagt accatcccgg tcgaatcagt gccagtcgtc cgccccaagg      2820
     agatagcacg gatcatcaag tcgctgaagc cgaagaaggc gcctggcaag gacaacattc      2880
     ggaacaccct gctcaagcgg ctcccccgca aaggactggt gatgctgacg ctgatcgtga      2940
     acgcgtgtct gaggacatcg tactttccgt ccagctggaa gcacgccatc gtcacggcaa      3000
     tcccaaagcc gggcaaggac atcacgaatc ccaccaacta ccgtccgatc agcttgcttc      3060
     ccgtgatgag caaaatcctc gagcgtgtgg tgcttacccg tatcggaaac ttcgtcgagc      3120
     aacgaaatgt cgttcctccg cagcagttcg gcttcaaacg gggccactcc acaaaccacc      3180
     agctcgccag actaacgcgc aacgtcaaga gctcgctcgc ccggggcgag tcagctggca      3240
     tggttcttct ggacgtggag aaggcgtacg attcggtgtg gcaggatgcg atcctgcaca      3300
     agatgaagct ggccgggttc ccggcgtaca ttctgaagct gctcaactcc ttcctgaagc      3360
     agcgcagctt ccaagttgcc gtcgatggtg cgctctcgcg ccgtcatgaa attcctttcg      3420
     gcgtcccgca aggagctgtc ctgagtccgg cgctgtacaa catcttcacc tcggatctcg      3480
     tcatggtgga cggggtcgaa tactacctct tcgccgacga cactggattc gtcgctgctg      3540
     acaagagtgc agaagtgatc atcgagaagc tgcaggcggc ccaggactcg ctcgagagct      3600
     atcagcggaa gtggcgaatc aaaataaacc cggcgaagac gcaggcgatc tttttcaccc      3660
     ggcggcgcgc tgaaaggttc ctcccccagt cacgtgtgct ggcactgggc cacgaagtcc      3720
     cctggtcgga cgaggtcaag taccttggcc tcgcgctcga cccgaaactg aagtacgaca      3780
     agcacatcga cgccgcgttg cagaaatgtg acaagctgac gaggatgctc tacccgctgg      3840
     tgagccgaag gtcaaggctg agcaacgcca acaaacttct gctctacaag ctcatcttcc      3900
     gtccgacgct cacgtacgga ttcccagcct ggcacagctg tgcttcaacc cgccgcaaaa      3960
     agctgcagac gcgccaaaac aagatcctga aaatgatgct ggacttgccg tttaatttcc      4020
     cgacggacga gctcgaggag gcggccaaca cggaatcgct ggaaacctgg accagcaaac      4080
     tgctacagcg gttttggacg agttgcacga tgtcagagaa tactctgata tcgagtttgg      4140
     tgccgtgata ctgtgatcta gtttttaaga aacccctttt cctcctccta tcccccttct      4200
     atcctagcaa aagtgacagg ttttttgcga gttgttttcc tgttttctgt ttcctttaca      4260
     accaacttta tttgtatcca ttgtgataaa tgccttatac acagctgaaa ggatccccca      4320
     aaactctgta ctgcacttat aaaactaatg ttagtcgata aactaaagaa ataaactgaa      4380
     ttgaattgaa a                                                           4391
//
ID   Jockey-6_DAn repbase;    DNA;    INV; 5033 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5033
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 387-387 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..2181
FT                 /product="Jockey-6_DAn_1p"
FT                 /translation="MSSLSDSDDEFDISKIVARQQQKIQALKPAKPSRPIA
FT                 SPVNISPSSHDPEPELAVINGDEEVWWSPRPANKRRLDSRSPNSVTKILRN
FT                 SNSPKTNVSANRFSDLSDMDTDTEPVEVPQTVGPNVSEEASTSSSLRQVSN
FT                 NNKSTPNNASTINKDNTKAVNNTAGSNKNVSRPSGSQEQLPSHKPPPIVVD
FT                 HCENLNGLIRSTDKIVDPSKYSLKCHPNNSVSILATDSDTYRAITKSLTLK
FT                 KVPYHSWQLKEDRSYRVVIRGVHHSVPDVDIKESLTSAGHLVRFVNRPRSR
FT                 FDKTKLVNLVFVELEPAANNKEIHGIKTLCRQRVQVELPYKKNDVVQCHRC
FT                 QAFGHTKNHCQKLSNCVRCGLQHGLEACLKDVNPVKCANCGGGHTASYKGC
FT                 VIYQQVAQRKSATSQRRTVPQQFTDPYVWSNSAVPNSYANAVRGIASHPQQ
FT                 QQVPVTFSQSXXFPPPGSDNRKQSQPRHQKVPHRQQQQPSQQQQRPQQHQQ
FT                 QQQQQPDLQRTLPQQQRRNSQQLINDQQWQRQEQMFLQSNESLSVLVAQID
FT                 KLFQMMVSMMGLVSRLLPQNTPGTAQAFPGSFPVNATQP"
FT   CDS           2181..4901
FT                 /product="Jockey-6_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLSIGVWNADGLANKAIELELFVQSHNIDIMLV
FT                 SETHFCSRSYYNLHGYDIHQATHPADRKRGGSAIIIKRGIKCYQSYSLQST
FT                 NVQCVSVKVKTDLGEIGIASIYCPPNFQCSADDFEKLFDDLGTNFIIAGDW
FT                 NAHHRLWGSRNSTSRGRALADVVQRSNVQVLATGGPTHYPYSQRTPTAIDF
FT                 AVYRGIRSECLSITESLELSSDHIPLIIKLRVAAQIIRNRPRILPRNASIP
FT                 RFQAAVNRLVNLNLVLNSPEDINDAVEIFARSIHIAAESSTCGQVSSHPNP
FT                 PQALLKPEVMDLVRXKRSLRRRYMRSQGLVDKRAYRRAEDELKKLLHRTKR
FT                 EYFDEMLLKADPTKPYGFNLWKSTRNIKRQPLRKIPIKKTDNTWCRSDSEI
FT                 SLAFADELEKRFQPFDLASPEDLEETMAFINAPSPNALPIXHVSPEEVCLH
FT                 IRKLHVNKAPGFDGIDNRIAKALPKKGILFLVLLFNXMLRIHHFPSQWKCA
FT                 VITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLSRIMGVRSVQVAIPD
FT                 HQFGFRHRHGTPEQAHRVVNHILKAFENKQYCSAIFLDVKEAFDRVWHLGL
FT                 LHKLKSLLPTGQFLLLKSYLLDRSFMVEVRGERSSIRLARAGVPQGSVLGP
FT                 VLYTLFTSDLPSLVEPGTLLATYADDTAVLVNSSCRVEASRITQEFLDSYG
FT                 KWANRWNIAINSRKSQHCSFTLRAKTLPRVELHDVTIPQSPQAQYLGLILD
FT                 KRLTWKEQTKKITATCRSKLRKLNWLLKPTSKLSLGNKVLLYKSIVLPSII
FT                 YCIQIWGMASDTNVMKVQRTQNRALRMMANAPWYVRNDALANDLHIPSIRE
FT                 QINRHSSRYSDRLLAHPNHLAASLANQNNRRRLKRRHPSDLWTRGRNVSRV
FT                 LKQ"
XX
SQ   Sequence 5033 BP; 1514 A; 1323 C; 1046 G; 1144 T; 6 other;
     cagtctcgat catgctttcg tggagtgcag acgcgttttt gcatcgctgc gaatctcact        60
     gtgaagagtc tatggacaag tccacctcag tggcaagaat tgttactttt gtgaatccca       120
     cctccgttag ctctgcttaa cgcgataaca agtgattcga aaagacaaaa caagtgaagg       180
     ttttgtgaag acttgaatca aattcaaggt caaactgagt ttgagaataa ttacatccca       240
     ataaaagaaa aaaaataaat ttcaattgct ctgacacttg gtgggttcga gccgggtgct       300
     gcccgactgc ggggcttgtg ccttgcccac tgagccacgg tcacctcatc ggtaaccgta       360
     caagtggccc atacatacaa gaagtcggta aagcagtgca catctgtgcc ctatacttga       420
     accatgtcta gcctttcgga ctccgatgat gaatttgaca taagtaagat tgtggcgcga       480
     caacaacaaa aaatccaggc cttaaagcca gctaagccaa gccgaccaat tgcctccccc       540
     gtcaacatct caccttcaag ccatgatccg gaaccggaac tagcagtcat aaatggagac       600
     gaagaggtct ggtggtcccc aagaccggca aacaaacgcc gtcttgactc cagatcccca       660
     aattcagtca ccaaaatcct tagaaactcc aacagcccta aaaccaatgt ctctgccaac       720
     cgattctcag atctgtcgga catggacaca gacaccgaac ccgtcgaagt cccacaaacg       780
     gtgggcccca atgtctctga agaagccagt acttcttcca gcttaagaca agttagcaac       840
     aacaacaaaa gcaccccaaa taacgcatca acaataaaca aggacaacac aaaagccgtt       900
     aacaataccg caggcagcaa caaaaatgtc agccgaccgt ctggtagcca ggagcaacta       960
     ccctcccaca aaccaccccc aattgtggtt gatcactgtg agaatctaaa cggactcata      1020
     aggtccacag acaagattgt tgacccgtcc aaatactccc taaaatgcca tcccaacaat      1080
     tctgtttcca ttctcgcaac agattcagac acatacagag ccataaccaa atcgctgacc      1140
     cttaaaaagg taccatacca ttcctggcag ttaaaagaag acagatccta tcgtgttgtt      1200
     atccgtggtg tccatcattc cgtcccggac gtagacatta aggaaagcct gacctcggcg      1260
     ggtcacttgg ttcgatttgt caatagacca agaagccgct tcgacaaaac taagctggtc      1320
     aacttagttt ttgttgaact tgaaccggct gcaaacaaca aagaaatcca cgggatcaag      1380
     acactctgtc ggcaacgggt ccaagttgaa ctcccctaca aaaagaatga tgttgtccag      1440
     tgccaccgtt gtcaagcttt cggacacacc aaaaatcatt gccaaaagct atctaactgc      1500
     gttagatgtg gcctacaaca cggcttggag gcctgcttaa aggatgtcaa tccagtcaaa      1560
     tgtgcaaact gtggcggtgg acatacagct agctataaag gctgcgtcat ataccagcaa      1620
     gttgctcaac gaaaaagtgc cacatcccaa cgcagaaccg tcccccagca gtttactgat      1680
     ccttatgttt ggtcaaactc agcggtgccc aactcctacg ctaatgcwgt ccgtggtatt      1740
     gctagtcatc cccagcagca acaagtccct gtgaccttct cgcagagcsa amaatttcct      1800
     ccaccaggca gtgacaacag gaaacaaagt cagccacgtc accaaaaagt accgcatcga      1860
     cagcagcagc agccatcaca gcaacaacaa aggcctcaac aacatcaaca acagcaacag      1920
     caacagccag atctccagag gactctccca caacaacagc gacgcaactc acagcaattg      1980
     atcaacgacc agcaatggca gcgccaagag caaatgttct tacaatcaaa cgaaagcctg      2040
     tcggtccttg ttgcccagat tgacaagtta ttccaaatga tggtgtcgat gatgggtctc      2100
     gtctctagat tattacccca aaatactcca ggaacagctc aagcgttccc tggatctttc      2160
     ccagttaatg cgacacaacc atgagccaaa tcggcctgag cattggtgtg tggaacgccg      2220
     acggactggc caacaaagcc attgagctgg agctctttgt gcaaagtcat aatattgaca      2280
     ttatgctggt tagtgaaaca cacttttgct cgaggtcgta ctacaacttg catgggtacg      2340
     atatccatca agcaactcat cctgccgatc gtaagcgcgg tgggtctgca ataataataa      2400
     aacgtggtat taaatgctac cagtcctaca gtttacaaag cacgaatgta caatgtgtct      2460
     ctgtcaaagt taaaaccgac cttggggaaa taggtattgc atctatatat tgtccaccaa      2520
     actttcagtg ttctgctgac gactttgaaa agctctttga cgatcttgga acaaatttca      2580
     taatcgcagg cgattggaat gctcaccacc gcctctgggg atcccgaaac tcaaccagcc      2640
     gaggaagagc actcgcagat gttgttcaaa gatcaaacgt ccaggtcctt gcaactggag      2700
     gacctacgca ttatccatac agccaaagaa cgccaacagc tattgacttt gccgtctata      2760
     gagggatacg gtccgagtgt ctctccatca cagaaagcct tgagcttagc tctgatcaca      2820
     tcccgctgat tataaagtta agagtagctg cgcaaataat tcggaatagg cctcgtatcc      2880
     tccctcgaaa cgcgagtatc ccgcgcttcc aagcagcagt caaccggctt gtaaacctca      2940
     atctggtgtt aaactctccc gaggacataa acgacgctgt agagatattt gcccggagca      3000
     ttcatatcgc tgccgagtcc tcaacctgtg gacaagtctc aagccacccc aatccacctc      3060
     aggctctttt aaaacctgaa gttatggact tggtaaggck gaaaagatcc ttacgtcgca      3120
     gatatatgag atcccaaggc ttagtcgaca aaagggctta ccgtcgtgcc gaggacgagc      3180
     ttaaaaaact tctgcatcga accaagcgcg aatattttga tgagatgctc ctcaaggcgg      3240
     accccaccaa accgtacggc ttcaacctct ggaaatcgac acgaaacatc aaacgacagc      3300
     ctctccgaaa gatccccata aagaaaactg acaatacatg gtgcaggtct gactcagaga      3360
     tttctttagc tttcgcggac gaactagaga aacgctttca gccattcgac cttgcgagcc      3420
     cagaggatct tgaagaaaca atggccttca taaatgctcc ttcaccgaat gctctaccga      3480
     tccsacatgt cagcccagaa gaagtttgtc tccatattcg aaagctacat gtcaataaag      3540
     cgccgggatt cgatggcata gacaatagaa ttgccaaggc tctgcctaag aagggtatcc      3600
     tgttcctcgt tctcctcttt aatkcaatgc tacgtatcca ccactttccc tcccaatgga      3660
     agtgtgctgt gataacgatg ataccaaagc caggaaaacc ggagaacctt gtagagtcat      3720
     accgacctat aagcttgctt cctacattct ctaaaatatt cgagagaata tttttaagta      3780
     gaattatggg agtaagaagc gtgcaggtcg ccattcccga ccatcagttt ggttttaggc      3840
     atcgtcatgg gaccccagag caagcacatc gagtagtgaa tcacatttta aaggcctttg      3900
     aaaacaagca atactgctct gcaattttcc tcgacgtcaa ggaagctttt gaccgcgtat      3960
     ggcatctcgg actacttcat aagttgaagt cattactccc gactggccaa tttctgctgc      4020
     taaaatcata cctgcttgat cgaagtttta tggtcgaggt gagaggggaa aggtcaagca      4080
     ttagacttgc tcgtgctggc gttccgcagg gaagcgttct gggtcccgtt ctctacacgc      4140
     tgttcacatc ggacctccca agtttagtgg aaccgggcac acttttggcc acatacgctg      4200
     acgatactgc cgtccttgtg aactcttcct gccgagtcga ggcatcaagg atcacccagg      4260
     aatttctgga ctcatatggc aagtgggcta acaggtggaa tattgccata aatagcagga      4320
     agtcgcaaca ttgcagtttc actttgagag caaagacact acccagagtc gaactccacg      4380
     acgtcaccat cccacagtca ccccaggccc agtacctggg tctgatctta gacaagcggc      4440
     tcacctggaa ggaacaaacc aagaaaataa cagctacatg tcggagtaaa ctcaggaagc      4500
     taaactggtt acttaagcca acaagcaagc tcagccttgg caacaaagtg ttgctgtaca      4560
     aatctatcgt gctgccctcg atcatatact gcattcagat atggggcatg gcttctgaca      4620
     caaatgtcat gaaagtgcag agaacccaaa accgagcgct tcgcatgatg gcaaacgcgc      4680
     cttggtatgt tcgaaacgac gccctagcaa atgatctcca cattccctcc attagagagc      4740
     agatcaaccg tcactcgagt cgctacagcg atcgcctctt agcgcacccc aaccacctag      4800
     cagcgtctct agctaatcaa aataaccgaa gaagactgaa acgaagacac cccagcgatc      4860
     tctggacaag aggacgtaat gtttcccgag tcctgaagca gtaattttac tgtaatctcc      4920
     tgttattgta ttcatgttat ctgttcattg ttatactcta cgtattatag ccattaagtt      4980
     ggctgatcga cgtaaataaa acttatatgt taaatcaaaa aaaaaaaaaa aaa             5033
//
ID   Jockey-6_DBp repbase;    DNA;    INV; 3396 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3396
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 714-714 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~92% identical to
CC   that of Jockey-3_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..585
FT                 /product="Jockey-6_DBp_1p"
FT                 /translation="CANCQEYGHTRSYCKLRPVCVVCGELHDSAHCPASKD
FT                 DQNSKKCGNCGGNHTANYRGCPVYKELKSRIHQRGFTARTQNNQFIASRSN
FT                 PEVFFSTAARSSLGLINSDKNVTYASALKSGLATPASKSSLPQSAHQEPNT
FT                 AQQYQLPEQPKSNFEAMICSLQQSLTEFMSFMRTTMQDLMRNQNLLIQMLV
FT                 SQQSK"
FT   CDS           471..3260
FT                 /product="Jockey-6_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQSTTKPYGVHVVYAYNYARSNAKPKSINTNAGFTTI
FT                 QIMTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSETHLTNRYNFQLR
FT                 GYSFYGTNHPDGKAHGGTGILIRSRIKHHYHTKFAKNYLQATSINIHLNTG
FT                 KQLTLAAVYCPPRFTIAEDEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVT
FT                 PKGKQLYNAIIKAKNKLDYASSGTPTYWPADPKKLPDLIDFAITKNIPKNL
FT                 ICAECLSDLSSDHSPVLFTLLQHPGTWDQSSNLTSHKTNWVKYRKYISSHI
FT                 ELSPHLSDEANVDSFVNSLESVLVSAARVSTPQTINTQRXQKKTNLQIEQL
FT                 VLEKRRLRREWQCHRSPSAKQRFKHASRQLDQALQQEETYVHHRYIEQLST
FT                 NSTKHSLWRAHPTLSSPKETVMPIRNSTGGWARSDADRASTFAKHLKNVFQ
FT                 PNPATNAFTLPTLSDEPQPQHEPIEFRPNEIVNIIKRQLNPKKSPGCDLIT
FT                 PKMIIELPYCAVCTLTQLFNAIAKLGHFPVRWKKSIIIMIAKPGKDHTIPT
FT                 SYRPISLLSCLSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVN
FT                 RITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKIKTMLPYSTHKIL
FT                 ESYLHDRKFVVRCNTAISDDYTVGAGVPQGSVLGPILYVLYTADIPTSTRL
FT                 TTSTFADDTAILSRSKCPIQATAQLAHHMVDVEKWLSDWRIKVNELKCKHV
FT                 TFTLNRQNCPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKRTHLKL
FT                 KASGLHWLINARSPLSLEYKVLLYNSVLKPIWMYGSQLWGNASNSNIDIIQ
FT                 RVQSKILRTITGAPWYVRNENIHRDLNILPVKEAIAEQKVKYLTKLSVHPN
FT                 HLARGLTRLSNQSRLRRNDLPTQRPT"
XX
SQ   Sequence 3396 BP; 1116 A; 890 C; 635 G; 754 T; 1 other;
     tgtgcgaact gccaagaata tggccataca aggtcttact gtaaactgcg cccagtttgt        60
     gtagtttgtg gtgagcttca tgactccgca cactgcccag cgagcaaaga tgaccaaaac       120
     tcgaaaaagt gcggcaactg cggtggaaat cacactgcta actatagagg ttgcccagtt       180
     tataaggagc tgaaaagtcg catccaccag aggggattta ctgcccgcac ccaaaataat       240
     cagttcatag cctccaggtc aaaccctgaa gtcttcttct cgactgcagc cagatcctca       300
     ctaggactta taaactctga caaaaatgtc acatacgcaa gcgctttaaa atcaggactg       360
     gctaccccag cctcaaaaag ctcactgccg caatcagcac accaagaacc gaacacggct       420
     cagcagtatc aacttccgga gcagccaaaa agtaactttg aagctatgat atgcagtcta       480
     caacaaagcc ttacggagtt catgtcgttt atgcgtacaa ctatgcaaga tctaatgcga       540
     aaccaaaatc tattaataca aatgctggtt tcacaacaat ccaaataatg acttccctac       600
     gaatatctac gtggaacgct aacggcgttt cgcagcataa actcgagtta gcgcaattcc       660
     tactagacaa tcaaatcgac gtaatgctgc tttcagaaac acatcttacg aacagataca       720
     atttccaact acgaggatat tcattctatg gaacaaatca tccagacggt aaagcacacg       780
     gcgggactgg aattttaatc agaagccgta tcaagcacca ttatcatacg aaatttgcaa       840
     aaaactacct acaggccaca tcaataaata tacacctaaa tactggcaag caattaactc       900
     tagctgccgt atactgcccc ccacgcttca ccatagccga agatgagttt atgcagtttt       960
     tcaactcact cggagaccac ttcatagcag caggagacta caatgccaag cacacacact      1020
     ggggatctcg tctcgtgacc ccaaaaggaa agcagctcta taatgcaatt atcaaagcta      1080
     agaacaagct agactatgct tcttctggca caccaacata ctggccggca gacccaaaga      1140
     aacttcccga tttaattgac tttgcgatta ccaaaaacat tcctaaaaat ctgatatgcg      1200
     ccgaatgcct ttcggatctt tcatctgatc actcgcctgt cctttttact ctactccaac      1260
     acccaggaac atgggatcaa tcatcaaatc tgacctcaca taaaaccaat tgggttaagt      1320
     acaggaagta catcagctca cacattgagc tgagtcctca cctcagcgac gaagccaacg      1380
     tagacagttt tgttaattcg ctggagtctg tactcgtctc tgcagctcga gtttcaacac      1440
     ctcaaactat aaacacacaa cgcawtcaaa agaagacaaa tctacaaatc gaacagctcg      1500
     tcctcgaaaa gcgacgctta cgtcgagaat ggcaatgtca cagatcgcca tctgctaagc      1560
     aacgcttcaa acatgcctca cgtcaacttg atcaagctct acagcaagaa gaaacgtatg      1620
     tccaccaccg ctacatagag caattgtcaa ctaacagtac gaaacactca ctatggagag      1680
     ctcacccaac tctgagctca ccgaaagaaa ccgtgatgcc tattagaaat tccacaggcg      1740
     ggtgggcgcg cagcgacgca gacagagcca gcacgtttgc caaacacctt aaaaatgtct      1800
     tccaaccaaa tcctgccacc aatgcgttta ctttgccgac tctatcagat gagccccagc      1860
     ctcaacatga gccgattgag tttcgcccaa acgaaatcgt taacatcatc aaacgacaac      1920
     tgaatccgaa aaaatccccg ggctgcgacc tcataactcc caaaatgatc attgagctcc      1980
     catactgcgc cgtttgcact ctcacccagc tatttaatgc catcgcaaaa cttggccact      2040
     ttccagtgag atggaaaaag tcaattataa taatgatagc aaagccggga aaagaccaca      2100
     ctatccccac gtcgtataga cctataagcc tactctcttg cctatctaaa ctctttgaaa      2160
     aatgcctaat gactcggata aacacatacc tgagaatcca ggaaggaatc ccgtcacacc      2220
     aatttgggtt tcgtgaaaag catggaacaa ttgagcaggt caaccggata acatccgaaa      2280
     ttcggaacgc gttcgaaaaa cgagagtact gtactgccat atttttagat gtctctcaag      2340
     cattcgatag agtctggctg gaaggtctaa tgtacaagat caagacaatg ctcccctaca      2400
     gcacccacaa gattttggag tcttaccttc acgacagaaa atttgtcgtg aggtgcaaca      2460
     ccgctatatc cgatgattac actgttggag ctggagttcc tcaaggcagc gtgctagggc      2520
     caatattata tgtcctctac acagcagata tcccgacaag cacacgtcta acaacatcca      2580
     cgtttgccga tgacacagct attcttagcc gctcaaaatg cccgattcaa gcaactgcgc      2640
     agctagctca tcatatggtc gatgtcgaaa aatggctgtc agactggcga attaaagtga      2700
     acgaactaaa atgcaagcat gttacgttca ctctgaacag gcaaaactgc ccgccgataa      2760
     cattaaacaa cactctactc ccacaagcaa acgaagtaac atacctagga gtacatctcg      2820
     acagaagact cacatggcgc cggcacattg aagccaaaag aacacaccta aagctaaaag      2880
     ccagcggcct tcattggctt atcaacgctc ggtcacctct tagccttgaa tataaagtcc      2940
     tgctgtacaa ctcggtacta aaacctatat ggatgtacgg ctcccagtta tgggggaacg      3000
     ccagcaatag caacattgac ataattcaaa gagttcagtc gaagatcttg agaacaatca      3060
     ccggggcacc gtggtacgtt cgcaacgaaa acatacaccg cgacttaaac attctaccag      3120
     tcaaagaagc gatcgcagaa cagaaggtaa agtacttaac caagctatcg gtgcacccta      3180
     accacctggc gagaggtcta acaaggttga gcaaccaatc acgccttcgt cgcaatgact      3240
     tacccaccca gcgaccgacc tgagggacgc gcaaccagaa tgcagtctta gtatactgtt      3300
     agttaaattt taatgttaag attcgtcaac ttattgttag tctcaaaatt aagagtagat      3360
     tcaataaata aaagcaaagc tataataaaa aaaaaa                                3396
//
ID   Jockey-6_DEl repbase;    DNA;    INV; 4722 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4722
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 559-559 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..1928
FT                 /product="Jockey-6_DEl_1p"
FT                 /translation="MPAGTLLKSANSKPVSQSRVQQQQQQDARRLSSLQLS
FT                 SSSKNNAYLAIVSSETVNNTTTSAMSPPATERARSLSPALFTNSSCAAPTQ
FT                 SWSSQCPSPLPPIDAPTTSACALTNTVPSITTVVSTTTTTTSTSTNVWPIL
FT                 ASRAILASAAELSQSTLVQTGIDRYVQIKRKLSPQKAKEANLPKLTKTSNN
FT                 TTKATSENKFAILGELEKDDGQPPQANKIVKPPPMYVRDQNCSDLINKLKQ
FT                 KIGQNNFYITILKRGNISETKLQITNEANYRSVTNFLDSERVNYYTYQLKS
FT                 SKGLQVVIKGIESTVPAADIAEGLKENGFDVKNVMNITNRAKIPQPLFKIE
FT                 LKPDATTLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEFGHTK
FT                 SYCTLRPVCVACGDLHCIEACTGNKEDPALRKCSNCGGNHTANYRGCPVYK
FT                 EIKSRLNQRRQQPTSAQQVAQPNLYIPSQTTPGVTFAAALRYPGLSPTRTA
FT                 QPEALQPHPPIPKPKYTPLPEQNAQRPTQPYNQQNQTYTPQIQNSIEATLA
FT                 TLTNIMLSMQGTLQELVRNQNNLMELLIKQKST"
FT   CDS           1932..4613
FT                 /product="Jockey-6_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MDPLRICFWNANGASQHRLELLQFLNTQDIDIMLLSE
FT                 THLTNKNHFYLTGYIFYASNHPDGKAHGGTGILIKQRIRHHPLEAFAYNHI
FT                 QATSLRINITSGPVTLSAVYCPPRFNISENEFLGFYNSLGNCFIAAGDYNA
FT                 KHHYWGSRLINPKGRQLYNAIIKPGNKLDFVSPGTPTYWPADPNKKPDIID
FT                 FAVTRRVPSRLIHVETLAELSSDHSPVLLCLSEHPQFVERPQFLTSNTTNW
FT                 LKYKKYISSHFEIEPKISCEADIEDSLKHITDVMSSAAKHSTPELSATSPP
FT                 KTTRTTTQIQSLLQEKRRLRRDWQAHRSPATKQRFKEACRKLSKALLTEKN
FT                 QTQRAYIAQLSPTSNKFPLWRAHPNIQPPIEPDFPIRSPTGGWARSDEEKA
FT                 NIFASYLKNVFQPHPPTNQFTLPNISPAEPSSTIILETSTIIKAIAEQMNP
FT                 KKAPGHDLISPKMIIELPLCAVKSITTIFNSILKWGYFPTQWKKSVITMIP
FT                 KPGKDKSQPSSYRPISLLPCLSKLFEKLLLCHLRTHLQNDRAIPLHQFGFR
FT                 EKHGTTEQVNRITAEIRTAFECREYCSALFLDVSQAFDRVWIDGLVHKIKT
FT                 VLPQNTHKLLESYLKDRVFTVRCKXFFSANHKIEAGVPQGSVLGPILYVLY
FT                 TADIPTSSQTTLSTFADDTAITSRSKCPKTATAYLKNHLGAVEKWLADWRI
FT                 QVNEQKCKHITFTLNRATCPPLALNNKQIPQVDEVTYLGIHLDRRLTWRKH
FT                 IEAKKISLKLKANSFHWLINSRSPLPLELKVVIYNSCLKPTWMYGSELWGN
FT                 ASSSNIEIIQRIQSKILRTITGAPWYIRNANIHRDLDIKPVKEEIDSKVSK
FT                 YEARLSIHPNQLARQLRRLSNHSRLQRNDRPLLPNLGPLTN"
XX
SQ   Sequence 4722 BP; 1606 A; 1263 C; 817 G; 1035 T; 1 other;
     caactacccg aggtagacgt gtttccgatc gctccgccga gtgaacggga aaactaactt        60
     atttaaaaat aaaaacacac caataaatag cgaaaagacg ctggcagcaa tgccaaacaa       120
     caagggctct cttccctaac aaatctaata acaaatacaa agatttaaat aaattaaact       180
     aaataacaat gcctgcgggt acgttattga aaagtgccaa cagcaagcca gtgagtcaaa       240
     gtcgtgtaca acaacaacaa cagcaagacg cgcgtcgact gtcttcgctt caactgtctt       300
     cgtcttcgaa aaataatgca tacttagcaa ttgtctcatc ggagacagta aataacacaa       360
     caacaagtgc aatgtcgccg cccgctactg agagagctcg gtctctttcg ccagcactat       420
     ttaccaactc aagctgcgct gctccaacgc agtcatggag ttcgcaatgc ccttcccccc       480
     ttccacctat agacgcaccg actacatcag cttgtgcgct cactaatacg gtgccctcaa       540
     taacaactgt cgtatcgact acaacaacaa caacttcaac atcgaccaac gtgtggccga       600
     ttttggcatc gcgagcaata ctagcttctg ctgcagagct ctcacaatct acgcttgtac       660
     agactgggat cgatcggtat gtacaaataa aaagaaaact tagtccgcaa aaagctaaag       720
     aagcaaattt gcctaaactt acgaaaactt caaacaacac cactaaggca acttctgaaa       780
     acaaatttgc catacttggc gagctcgaaa aagatgacgg tcaaccaccc caagccaata       840
     aaattgtaaa gccaccacct atgtacgtta gagatcaaaa ttgttcagat ctaatcaata       900
     aactcaagca aaaaattggg caaaacaact tttatattac tattttaaaa agaggtaata       960
     tatctgaaac caagctccag atcaccaatg aagccaacta ccgctctgta acaaacttcc      1020
     tggacagtga gcgtgttaat tattacacct accaactcaa aagtagcaaa ggacttcaag      1080
     ttgtaataaa gggtatcgag tcaaccgtcc cggcagctga tatagctgaa ggacttaaag      1140
     aaaatggttt tgacgttaaa aacgtaatga acataaccaa cagggcaaaa attcctcagc      1200
     cactcttcaa gattgaactc aaaccagacg cgactaccct gaagaaaaac gcagtgcacc      1260
     ccatatacaa actgcaatac ctactccatc gaagaataac cgtagaggag ccgcataaac      1320
     gaaacggccc ggtacagtgt acaaactgcc aggagtttgg gcacacaaaa agttattgca      1380
     ctttgcgacc agtctgtgtt gcctgtggcg acctgcactg tatagaagct tgcacgggta      1440
     acaaagaaga cccagcactg agaaaatgta gcaactgtgg tggaaaccac actgctaatt      1500
     acaggggatg ccccgtctat aaagagatca agagtcggct caaccagagg cgccaacaac      1560
     caacctccgc ccaacaggtt gctcagccaa atctttacat tccttcgcaa accactcctg      1620
     gagttacttt tgcggctgca cttcgatacc ctggattgtc gcctacaaga accgctcagc      1680
     ccgaagcatt acagccccac ccgcctatac caaaaccaaa atatactccg cttccagagc      1740
     aaaacgctca aagaccaact caaccttata accaacaaaa ccagacttac actccacaaa      1800
     tacaaaacag catcgaagct actttagcta cactcacgaa catcatgctt tcaatgcaag      1860
     gtaccctcca ggaactagtg cgaaaccaga acaaccttat ggaacttcta atcaaacaaa      1920
     agtcaactta aatggatccc ttaagaatat gcttttggaa cgctaacggt gcttcgcagc      1980
     acagacttga acttctacag ttcttaaaca cccaggacat cgatatcatg ctcctctcag      2040
     aaacgcacct aaccaataaa aaccatttct atctcactgg ctacatcttc tatgcgagca      2100
     accacccaga cggcaaagct cacggaggca ccggaatcct tatcaaacag cgcattaggc      2160
     atcaccctct ggaggcgttt gcttacaacc acatacaggc cacatcccta cgaatcaaca      2220
     taaccagcgg tccagtcacc ctatcggctg tgtattgtcc cccacgattt aatatttcag      2280
     agaatgaatt tttaggcttt tacaactcat tgggtaactg ttttatagct gccggtgact      2340
     ataatgcgaa acaccactac tggggctctc gtcttattaa ccccaaagga cgccaattat      2400
     acaacgctat tatcaaaccc ggtaataagc tagattttgt ttcaccaggt actcccacat      2460
     actggccagc agatccgaac aaaaaaccag acattatcga ttttgctgta actaggagag      2520
     tgccgtccag gctgatacat gttgaaaccc tggcggaact gtcatctgac cactcgcctg      2580
     ttttactctg tctatctgaa catccacagt ttgtagaacg accacaattt ctgacatcca      2640
     atacaacaaa ctggctaaag tataaaaaat atataagctc acactttgaa atcgaaccta      2700
     aaatctcctg tgaagctgat attgaagact cacttaagca tataacggat gtaatgtcct      2760
     ctgctgccaa acactctaca cccgaacttt cagccacatc ccccccaaaa actacacgta      2820
     caactacaca gatccagtcg ctccttcaag aaaagcggcg acttcgccga gactggcagg      2880
     cacaccgctc cccagccact aaacaaaggt ttaaagaagc ttgtcggaag ttgtctaaag      2940
     ctttactaac tgaaaagaat cagactcaac gtgcctatat agcgcaactt tcgcccacca      3000
     gcaacaaatt tccactctgg agagcgcacc caaacattca accaccaata gaacccgatt      3060
     ttccaattcg atcaccaaca ggtgggtggg cccgtagtga cgaggaaaag gccaacatat      3120
     tcgcctctta cttaaaaaat gtcttccaac ctcatccgcc gacaaaccaa ttcactttac      3180
     caaacatctc accagcggag ccttcctcca caataattct tgaaacaagc acaatcataa      3240
     aagccattgc agaacagatg aatccaaaaa aagcccctgg ccatgattta atttcgccta      3300
     aaatgataat tgaattgcct ctatgcgcag tcaaaagcat aaccaccata ttcaactcaa      3360
     ttcttaaatg gggctatttt cccacacaat ggaaaaagtc tgttattaca atgataccaa      3420
     aaccaggcaa agacaaatcc caaccttcgt cctacaggcc cattagcctc cttccgtgcc      3480
     tatcaaagct atttgaaaaa ctgcttttgt gccacctcag aacacacctc caaaacgaca      3540
     gagcgatccc cctgcatcag ttcggcttca gggaaaagca cggaactacc gaacaggtaa      3600
     atcgcataac agctgaaata cgcacagcgt ttgaatgcag ggaatactgc agtgccttat      3660
     tcctagacgt atctcaagcc ttcgaccgcg tttggattga cggtctggtt cataaaatca      3720
     agactgtcct accacaaaac acccacaaat tacttgaatc ttaccttaaa gacagagtat      3780
     ttactgtcag atgcaaamat ttcttctccg ccaaccacaa aatcgaagct ggagtacccc      3840
     aaggaagtgt gctcggaccg atcttgtatg tcctatacac ggctgacatt cccacaagca      3900
     gtcagacaac tctatccacc tttgctgatg acacagctat aaccagtcgt tcaaaatgtc      3960
     caaaaacagc aacagcgtat ttaaaaaacc acctgggggc cgtagaaaaa tggctagcag      4020
     attggcgcat acaagtcaac gaacaaaaat gcaaacatat tacgtttaca ctcaatcggg      4080
     caacctgccc accactggcc ctaaacaaca aacaaatccc ccaagtcgac gaagtcacat      4140
     acctgggcat ccacttagac aggcggctta cctggagaaa gcacattgaa gcgaagaaga      4200
     tttccctaaa actcaaggcc aacagtttcc actggctcat caattcccgc tcacccctgc      4260
     cactggaact caaagtagtt atttacaact cttgtttaaa gccaacctgg atgtacgggt      4320
     ctgaactctg gggaaacgca agcagtagca acatagaaat catccaacga atacagtcga      4380
     agatactgcg aacaataact ggggccccct ggtatattcg caacgcaaat atccacaggg      4440
     acctggatat aaaacccgtt aaagaagaaa ttgatagtaa agtctcgaag tacgaagcta      4500
     gactatcaat acatccaaac caactagcca ggcagctcag gcggctcagt aaccactctc      4560
     ggttacagcg caacgaccgc ccactcctgc ccaacttagg gccattaacc aattaacaat      4620
     tataatacag tataggttaa gatttgaata cttattgtaa gtctcttcta gagaagattc      4680
     aataaacaaa taaaacgtaa aaaaaaaaaa aaaataaaaa aa                         4722
//
ID   Jockey-6_DEu repbase;    DNA;    INV; 4791 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4791
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 952-952 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           423..1922
FT                 /product="Jockey-6_DEu_1p"
FT                 /translation="MDKDQQKSIDFDLMRKFAGASSADLRNSLRASLLDSS
FT                 VNAGSTTGWAPTSCITTCTVTSPTSSSLTFTTSVNGSLCSAASSTMQAPAP
FT                 TNPSTQGWQEVTVNHKKGATKKRAGSNLSPKVTPKKIVSNANRFLALSDED
FT                 ELDAEPSTSLAARNRATKLRDATQQSETANGAGQAQTVAPQXSRSPKVPRI
FT                 MVPGVVSYSAFCSELDALIGETYTIKALNSGDCAVQCNSSDAYRLVAKHFR
FT                 EKGIVFHHHQLPEDRPFRMVMRNIHHDVPSEDIIECLQEQGHCVIRIYTPR
FT                 SKATQLPLNMRFVDIKKADNNKLLKNLTAVCRHKVTWEKPRKQSGPVQCNR
FT                 CQEYGHTKAYCTRHHICRECGENHPTXECKLGKDDPRCCFHCGNSHAANFK
FT                 GCRKYLQVAFKHSPQSKVSEATVTNSILPTHASPNSGAKTYAGVAKRSQSN
FT                 THNPPPTQSNANASLDAKLEQLFTRLDRMMSLVETLMQAILQTRSSSSALH
FT                 NGCA"
FT   CDS           1912..4620
FT                 /product="Jockey-6_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGALKIACWNPNGLSSKANEIAAFIELHEVDILLLSE
FT                 SRLNSCSIFKIPGFTLYKADHPDDRRHGGAAILVKSVIYHQLSFTLSEEHI
FT                 QAVSIELSTSRGRFNIAAVYCPPAVRWTEADILPLLSQLGVKFLAAGDWNA
FT                 KHRWWGNYRMCARGRILSSVLANNNVEIVASGEATCYPYCANATPSAIDFG
FT                 ISKGFRQQQVSVRVLTELSSDHLPLLFLINEEAQFFKGVPKMLPAHANVDI
FT                 FKSYIESHSVLNVPITTCNELDAYVDYFTTTITAAAQRATPPQRQSDPPPT
FT                 RRAPLLTLEARALLEQKRHLRRQFIVTGDPATKQLLSSVSNRLHRLLAKTR
FT                 QKNIDTLLEGAGPDNCSDFSIWKLTRGVKRQPLFQSPILSHSGLWLKNDCD
FT                 KANAFAEHLSTTFTPFELPDASHREEVDNFVRAPIQPARPIRHTTPQEVTL
FT                 QLKALNLKKTPGLDGIDNRAARSLPPKGVLGLVKIFNAMLSLGYFPTQWKR
FT                 ARIIMIAKANKPPTQIDSYRPISLLSTFSKVFERILLSRLMDLPQVEGHIP
FT                 QHQFGFRKSHGCPDQVHRLVNHITYGLEHKLHTVGVFLDVKQAFDKVWHEG
FT                 LLYKIKELLPAPYFAILRSFITGRTFKVAVRDSCSSLAHIHAGVPQGSVLG
FT                 PILYTIYTSDMPVPLPTTDARLLMATYADDTAILASHSSQLTASETVQNWL
FT                 HAMERWTKQWNIAINCSKSACVTFSLRLVMDIDLSFNGNVIQNASSTCYLG
FT                 VHLDRRLIWKTHITAIKTKCLRKLQKLDWLLSSRSLQLSTKALLLKAILTP
FT                 TWTYAIQVWGTASRHQLNRLRVVQARAARRASGLPWYVTNQAIQNDLRLVP
FT                 VGDLLNQLSRSYSDRLSAHPNPQASRLANPQTLRRLKRFHPSDLSSRIIN"
XX
SQ   Sequence 4791 BP; 1326 A; 1316 C; 1040 G; 1106 T; 3 other;
     caactaagtc gtagtcgagc ttttgcaaga gtaagacgtg ttattggtgc tctcatcagg        60
     tgtcatttat aaagttaata ttaagaagaa tcccaggctt tcgggaagat ctttcactgc       120
     aggaccacag ctgtcctacc tatcttcact cctgtgatcg caaaaggaac ctgccacagg       180
     aatatccata gttcttcgca agcgctgggc accggcaaat tgctggtggt cggctgtttt       240
     ccacgaggca atcagctgtt aaagctctaa gctttcaact ggtttgtgtc tgagctgagg       300
     ataagcgcca cctattggcg gacaactgat caagtctaag cggttgtaag accggcttag       360
     cttttgttca tctttagtat attgctcaac tttatttggt aaagtcttgc taattgctaa       420
     aaatggacaa agatcagcaa aaatctatcg acttcgattt aatgagaaag tttgctggtg       480
     catcttccgc cgatctccgt aatagcctgc gagctagttt gctggacagc tccgtaaatg       540
     ctggcagcac aaccggatgg gcccctacaa gctgcataac aacctgcaca gtgacatccc       600
     caacctcatc ttcgctgacc ttcactacta gtgtaaatgg cagtctgtgt tccgctgcat       660
     ccagcacgat gcaagcccct gcacctacta acccctccac tcaagggtgg caggaagtca       720
     ccgtaaacca taagaaaggg gcgacaaaga agagagcagg tagcaacctc tcccctaagg       780
     tcacccctaa aaagatcgtt agcaacgcta atcgcttcct agccctaagc gacgaggacg       840
     aattggacgc cgagccttcc acttcgctag ccgcgaggaa ccgcgccaca aagttacgtg       900
     acgcaaccca acaatcggag acagcaaatg gtgcaggaca agcccaaaca gttgccccgc       960
     aacsctctcg atcacccaag gttccaagga taatggttcc cggcgtggtt agctactccg      1020
     ctttctgcag cgagctagat gctctcattg gagaaacata caccatcaaa gcgctgaact      1080
     caggtgattg cgccgttcag tgcaactctt cggatgccta taggcttgtg gccaaacatt      1140
     tccgtgaaaa gggaatagtt ttccatcacc accagctgcc agaagaccga ccctttcgca      1200
     tggtcatgag gaacatccat catgatgtcc cttcggagga catcattgaa tgcctgcagg      1260
     aacagggtca ctgtgttatc cgcatatata cccctcgtag caaggcaact cagcttccac      1320
     tcaatatgag gtttgtggac attaagaagg cagacaacaa caagcttctt aaaaacctca      1380
     ccgctgtctg cagacataag gtgacctggg agaagccgcg caagcagtcc ggccctgtgc      1440
     aatgcaatag gtgccaggaa tacggwcaca cgaaagcgta ctgcacacgg catcacatat      1500
     gcagagaatg cggagaaaac caccctaccw tggagtgcaa acttggaaaa gacgacccca      1560
     ggtgctgctt tcactgcggc aactcccatg cggcaaactt caaaggatgc cgaaaatact      1620
     tgcaagtcgc tttcaagcat agtccccagt cgaaagtctc agaagccacc gttacaaact      1680
     cgatccttcc aactcacgcc tcacccaact ctggcgcgaa aacatacgct ggtgtagcca      1740
     aaaggagcca atccaacaca cataatcccc ctccaactca atcaaacgca aatgcctctc      1800
     ttgatgctaa attggaacaa ctttttacga ggctcgacag gatgatgtcc ctcgtagaaa      1860
     cgttaatgca agcaatcctg caaacgcgtt cttcctcctc tgctcttcat aatgggtgcg      1920
     cttaaaattg cctgctggaa tcccaatgga ctaagttcga aagcaaacga gatcgctgcc      1980
     ttcattgagc ttcacgaagt agacatcctc ctgctgtctg aatcccgcct caattcctgt      2040
     tccatattca agatccctgg cttcacgtta tacaaagccg atcatccgga cgaccgaaga      2100
     catgggggcg cggcgatcct cgtaaagtcg gtcatttacc atcaactctc attcactctt      2160
     tcagaagagc acattcaagc cgtttccatt gagctgtcca caagcagagg gaggttcaac      2220
     attgctgcgg tgtactgccc tcctgccgtc aggtggacag aagcagatat cctgccactc      2280
     ctttcccaac ttggggtcaa atttcttgct gcaggtgact ggaatgccaa acacagatgg      2340
     tggggcaact atcgaatgtg tgccagaggc cgaattttga gctccgttct ggctaacaac      2400
     aatgtcgaaa ttgtggcatc tggcgaagcc acctgctacc cctactgtgc gaacgccaca      2460
     cccagtgcaa tcgactttgg catctcgaaa ggcttccgac aacagcaagt ctctgttaga      2520
     gtactgaccg agctatcttc tgaccattta ccattgctct tcctgatcaa cgaagaagct      2580
     caattcttta aaggagtccc caaaatgctg ccagcacatg ccaacgttga catctttaag      2640
     tcgtacatcg agtcacactc cgtactcaat gtgcctataa ccacctgtaa cgagctggat      2700
     gcgtatgttg attacttcac aaccacaatc acagctgctg ctcagcgagc tacgccacct      2760
     cagcggcaat ctgatccccc gcctactagg agggcgccct tactgacttt ggaggcaagg      2820
     gcacttctgg agcaaaaaag gcacctcaga aggcagttca ttgtgactgg tgatcctgca      2880
     actaagcagc tgctatcaag cgtctcaaac agactgcaca gattgctagc taaaacccgc      2940
     caaaagaaca tcgataccct gcttgaggga gctggcccgg ataattgcag cgatttttcg      3000
     atatggaaac taacaagagg agttaaaaga cagccgcttt tccaatcccc aattctgagt      3060
     cacagtggcc tctggctcaa gaacgactgc gacaaggcaa acgcttttgc tgaacatctg      3120
     tccaccacct ttactccttt tgaacttcca gacgcttccc accgcgaaga agttgacaat      3180
     tttgtaagag cccctatcca accagctcga cctattagac atactacgcc gcaagaagtt      3240
     acgctccagc taaaggcgct aaacttaaaa aagactccag gactcgatgg tatcgataat      3300
     cgagcggcaa ggtctcttcc gcccaaagga gtgctagggc tggtgaagat ctttaacgct      3360
     atgctaagcc tgggatattt tccaacgcag tggaaaagag cgcgaataat aatgattgca      3420
     aaggcaaaca agccacctac gcaaattgac tcctaccgcc caattagcct gttatcgact      3480
     ttctccaaag tctttgagcg gattctgctt agtcggctga tggatctccc acaagtagaa      3540
     ggtcacatac ctcaacatca gttcggcttt aggaaatccc atggctgccc agaccaagtc      3600
     catcgtctgg ttaaccacat aacctacgga ctcgagcata agctccatac tgtaggcgtc      3660
     tttctcgacg taaagcaggc ttttgacaaa gtgtggcacg aaggccttct ttacaaaata      3720
     aaggaactcc tccctgcacc ctacttcgcc atcctgaggt catttattac tggtagaacc      3780
     ttcaaagtag ctgttagaga ctcatgctcc agcttggcac acattcatgc aggagtgccc      3840
     caaggaagtg tacttggtcc gattttgtac actatatata ccagtgacat gccagttcct      3900
     ctgccgacta cagatgcccg tctgcttatg gctacttatg ccgacgacac ggccatcctt      3960
     gcgtcccact cgtctcagct aacagcctcg gagacagttc aaaactggct gcatgcgatg      4020
     gagcgctgga ctaagcaatg gaacatagcc attaactgca gcaaatcggc atgcgtgacc      4080
     ttctccctaa ggctcgttat ggacatcgac ctatctttca atggcaatgt catacaaaac      4140
     gcctcctcta cctgctactt gggcgtacac ctggacagac ggctcatctg gaaaacccac      4200
     atcacggcaa ttaaaacgaa gtgcctccga aagctgcaaa agctggattg gctcttgagc      4260
     tccagaagcc ttcaactgtc gacgaaagct ctgctgctca aagcaattct gacgccaacc      4320
     tggacgtatg ccatccaagt atggggtacc gcgtctagac accagctgaa caggcttaga      4380
     gtggtgcagg cacgagctgc tcgacgggca tcagggcttc cctggtatgt tacaaaccag      4440
     gccatccaaa acgacttgcg ccttgtccca gtgggcgact tgctaaacca gctgagtaga      4500
     agctactcgg acaggctctc ggcacaccca aacccacagg ctagcaggct tgctaacccg      4560
     cagactctta gaaggctaaa gagatttcac cccagcgacc tgtcctctcg tattattaac      4620
     taactttttg tatgtataaa tgtaaatatt gtaaatattt atatatagtc aaggcccata      4680
     tcccatatgt accatatatc ccactccatt ctacccgtcc ggtagagttc aactggcatt      4740
     gaacgattcc ggcgatatca ataaataaaa aaaaaaaaaa aaaaaaaaaa a               4791
//
ID   Jockey-6_DF repbase;    DNA;    INV; 4958 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4958
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 974-974 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..2093
FT                 /product="Jockey-6_DF_1p"
FT                 /translation="MFQIAGKTPSEIREEIISLQRPLCSKSASTSTITSML
FT                 ATASDAEISSVCSSASMDKTNVYYSQRSSGNSSPLPRGGAAIVSPTLGDNS
FT                 KISSTPFSDAATKLKLSQSHLSYKRKKQLSYTPYPKKVHKEKLSGSPSAST
FT                 SKASSSNRFALLDMEVDLDSDRPVEERSNLSLADAQTDLNDDMETIVSDNE
FT                 FEQNNSNGKNNPNNNLKPPQIVLSFVNLNDLFDVISGITSLDNVIVKVNQG
FT                 STARIFSKDSKTYRDIVDHFDEMEIEFHTYQMKEDKPHRIVVKGLHHSTLT
FT                 SEIVANFKTLGFEALQVHNPRSRSDPDEKLNIFFINIKPCAKINAIYDIVT
FT                 LCRQRVRIERMRKRSEIAQCIRCQEFGHTAKYCRRHPNCARCGEDHHTKQC
FT                 VRPQDQPPTCMHCRGNHTASYKGCQSYQEYLRRSMSSKKQSTRQHPQQKRQ
FT                 QQQPIREQQSQQMPNSSASNNIGLSYASIVRNGIGHAQRRLHDLQAQPQVQ
FT                 NSKNTQQQQYVLDVQSILEQQQQQFMKWQQQLQQQQQQQFFLWLQQQQQEQ
FT                 QKQNKQNSLRLERLENMVFEMANSIKQWTGGKSVLHNNVSASK"
FT   CDS           2093..4813
FT                 /product="Jockey-6_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNTLKILIWNVNGISGKAREVEFFAHNNNIDIILLSE
FT                 IRLNRGEVVKIFGYSFYPAYKPSRHNQGMGGAAVLVRSSLSHFPQRIIETK
FT                 SIQLSSIKVATGLGLVDVSAIYCPPGQRIVERHFTDILSSCGQRYIVGGDW
FT                 NARHWMWGDTYNSPRGRELVESISARGSKILATGSPTRYPYVPSHTATCID
FT                 FALYHGIMDSQINICQNWDLESDHIALIVNLLTNGSNITRSPRLITSRTDL
FT                 TSFKQILDNSFQLNSALDSRQDIENAVDTLTNNIYMAASASTPLEPDYRPI
FT                 NYGVVLTREAKALIVTKRRLRRRAIRSQDPEDRILWYRAAMQLRTLLRRLR
FT                 SDFFEHKLSSMDYTVDANYSLWKCTKSLKRQPLRQVPVRCPSGELAKNEVE
FT                 QANAFGLHLEERFTPYSFASTVQVSETHQTLETPLQMSLPIKPIRIEEISE
FT                 VIQSLPKNKAPGIDRICNVTLKALPIKAILFIALIFNAIIRTQVFPKQWKL
FT                 AAIQMIHKPGKPEADPESYRPISLLSSLSKLWERLIANRIAVIMNRDNILP
FT                 DHQFGFRRGHGTVEQVHRLVKHILQAFDDKEYSNAVFIDMQQAFDKVWHVG
FT                 LLLKIKNLLPAPYYGLLRSYLEEREFKVRVRDRYSDNYRMRAGVPQGSVLG
FT                 PLLYSLYTVDIPSPNRHHMIDPSKALIATYADDIAVIYNSRCRREAANGIQ
FT                 EYLKDLSAWCKRWNMRINPQKTTNPCFTLKRLVSNTPEIQLEGVSLEQPSQ
FT                 AKYLGITLDKRLTFGPHLKATVKKCNQRIQQLRWLTHRRSTLPLRCKRAVY
FT                 AFCILPIWLYGIQIWGIAAKSNYKRLQVLQNRFLRTITDCPWYVRGTTLHR
FT                 DLNLHTVEEQIGRHTSRYRDRLERHRSLLARNLLPARPLRRLKRQGFAKTI
FT                 RNQ"
XX
SQ   Sequence 4958 BP; 1593 A; 1062 C; 1004 G; 1299 T; 0 other;
     aagcagcgct gccgacacac gtcaaaatag ctacttaact ggaatttaaa aatattttat        60
     tttacaaaac tgcaagaagg ctcttgatga gattcggtgg tgccgtggac agaaaaacca       120
     aaagcaaagc aagaggatct caaatttttc ttttgcgcac tcttcgtgtg ctaattggac       180
     tttgtctagt gcagacgtac aactacaaat actcatctgt agacggtcac cattcactcc       240
     gcgcgctgcc gcgcaagagg ggtaatggat ggaaatcttc attctaactc tcaacctagc       300
     ggtaagcagt ttgattataa aaaatgttcc aaatagctgg taaaacacct tcggagataa       360
     gggaagagat catcagttta caacgcccac tgtgctcaaa atctgcgagc actagtacta       420
     taacctcaat gctggctaca gcatcagatg cggaaatcag cagtgtttgc tcttccgcga       480
     gtatggataa aactaatgtt tattactccc aacgctcatc tggtaattca tccccattac       540
     ccagaggtgg ggctgcaatt gtctctccaa ctcttggtga taattcaaaa atttcttcaa       600
     ctccgttttc tgatgctgct accaagttga agctaagcca aagccatctg tcgtacaaga       660
     ggaagaagca actttcatat actccttacc ctaagaaggt gcacaaagag aagttatctg       720
     gatcaccctc agcatcaacc agcaaggcaa gctctagtaa taggtttgcc ttactagaca       780
     tggaggtgga cctagacagt gacagacctg ttgaggaaag aagtaatctt tccttggcag       840
     atgcccaaac agatttaaat gatgatatgg aaacaattgt ctcagataat gaatttgaac       900
     aaaataattc taatggcaag aataatccca acaataattt aaaaccacca caaattgttc       960
     taagttttgt caaccttaac gatctatttg atgttatttc ggggatcact agtctagata      1020
     acgttatcgt taaagtaaat cagggatcta cagcaagaat attttccaag gactctaaaa      1080
     cttatagaga cattgttgat cattttgatg aaatggagat tgaattccat acgtaccaaa      1140
     tgaaggaaga taaaccacac agaatagtag ttaaagggct tcatcatagc acattaacta      1200
     gcgaaattgt tgccaatttt aaaaccttag gttttgaagc tcttcaggtg cataacccaa      1260
     gatctaggtc tgacccagat gagaaactca acatattttt tatcaatatt aagccatgtg      1320
     ctaaaattaa tgccatatat gatatagtaa ctctttgccg ccaacgagtg cgaatagaaa      1380
     ggatgcgtaa aagatctgaa atagctcaat gtattcgttg ccaagaattt ggacatacag      1440
     cgaagtactg ccgccggcat cctaattgtg ctcgctgtgg agaagatcac catacaaagc      1500
     aatgtgttcg tccccaagat caaccgccta catgtatgca ctgtagaggg aatcatacag      1560
     caagctacaa gggttgccaa tcttatcaag aataccttag gcgatcgatg agttcaaaaa      1620
     aacaatcaac gcgacaacat ccacaacaaa aacgtcagca acaacagcca atccgagagc      1680
     agcaatctca gcaaatgcct aactcttctg ccagcaataa tataggctta tcttatgcct      1740
     ctattgtaag aaatggaatt ggtcatgccc agcgccgtct acatgatctc caagcgcagc      1800
     cgcaagtaca aaattcgaag aatactcaac aacaacaata tgtgcttgac gttcagtcta      1860
     tattggagca acagcaacag caatttatga aatggcaaca acaacttcag caacagcagc      1920
     agcagcaatt ctttttgtgg ttacaacaac agcagcagga acaacaaaag caaaacaaac      1980
     agaacagcct tcgacttgaa agacttgaaa atatggtttt cgaaatggcc aattctatta      2040
     agcagtggac tgggggcaaa tcagtgcttc acaacaacgt ttcagcctca aaatgaatac      2100
     actcaaaatc cttatctgga atgtcaatgg catttcaggt aaagccagag aagtggaatt      2160
     ctttgcgcac aacaacaaca ttgatattat acttttaagt gaaattaggc tcaatcgagg      2220
     tgaagttgtc aaaattttcg gatattcctt ctatccagca tataaacctt cacgacataa      2280
     tcaaggaatg ggtggggcgg cggtattggt aagaagctct ctcagtcatt tcccacaacg      2340
     tattatagaa acgaaaagca ttcaattgtc ttccattaaa gttgcgaccg gcttaggact      2400
     cgtggatgta agcgcaatat actgtcctcc aggccaaaga attgtagaaa gacatttcac      2460
     tgatatactc tcttcttgtg gtcagaggta catagttggt ggtgactgga atgctagaca      2520
     ttggatgtgg ggtgacacct acaattcacc cagaggccgt gagctggttg aatcgatttc      2580
     agccagaggg tccaaaatac ttgccactgg ttcaccaacg agatacccat atgttcctag      2640
     ccacactgct acttgcatcg attttgcttt ataccacgga attatggatt ctcaaatcaa      2700
     tatctgccaa aactgggact tggagtctga tcacattgcc cttattgtta atctactaac      2760
     aaatggttcc aatatcaccc gaagccctcg gttaataaca agtcggactg atctcacttc      2820
     tttcaaacaa attcttgata actcctttca actaaattct gctctggact cacgacaaga      2880
     cattgagaat gcagttgaca ctctaactaa taatatttat atggctgctt ctgcttcgac      2940
     gcctttggaa ccggattatc gtcctatcaa ttatggtgtt gttctcacaa gggaagccaa      3000
     ggcgctaatt gtaacaaaaa ggcgccttcg aagaagagca attcgttctc aagatcctga      3060
     agaccgtatt ttgtggtaca gagctgcaat gcaacttcga acccttttaa ggagacttcg      3120
     aagcgatttt tttgagcata aattgtcttc catggactac acggtggatg caaattattc      3180
     actgtggaaa tgtacaaaat cgcttaagcg ccagcccctt agacaggttc ctgttcggtg      3240
     tcccagtggt gagctcgcaa aaaatgaagt ggagcaggcc aatgctttcg gtctacatct      3300
     agaagaacgc ttcactccgt atagctttgc atcgacagtt caggttagcg agacccatca      3360
     aactctggag acgcctctgc agatgtcgtt gccaataaag cctataagga ttgaagaaat      3420
     atctgaagtt atccagtcct taccgaaaaa taaggctcca ggaattgata gaatttgcaa      3480
     cgtaacgttg aaggccttgc ccataaaagc gattctattt atagctttaa tatttaatgc      3540
     tattattagg actcaagtgt tcccaaagca atggaaatta gcagcaattc agatgatcca      3600
     caagccaggt aagccagagg ctgatcctga gtcttaccgt ccgataagcc tcttatcgtc      3660
     cctgtccaag ttgtgggaga gactcattgc caatcgaata gcagttatca tgaatcgaga      3720
     caatatcttg ccagaccacc aatttggttt tcgaagagga cacggcactg tggaacaagt      3780
     gcatagattg gtgaaacata ttttgcaggc ctttgatgac aaagagtatt ccaacgcagt      3840
     tttcattgat atgcagcaag ccttcgataa ggtgtggcat gttggacttt tgcttaaaat      3900
     caaaaacctc ctacctgccc cctactatgg tcttctgaga tcctacctag aagaacggga      3960
     gttcaaggtc agagttaggg acagatactc tgataactat agaatgagag caggagtacc      4020
     tcagggcagt gtgcttgggc cgctgcttta ctctttatat acagtggata taccaagccc      4080
     aaacagacat cacatgatag atccttccaa agctttgatt gctacatatg cagatgacat      4140
     tgcagtcatc tacaattcca gatgtcggag ggaagcagca aatggaatac aagaatacct      4200
     taaggatctt tctgcttggt gtaaacgttg gaatatgaga atcaatccgc aaaaaactac      4260
     gaacccctgc tttacactga agagacttgt atctaacacc cctgaaatcc agctagaggg      4320
     agtcagtttg gaacagccgt cgcaagcaaa atatcttggt atcacactgg ataagcgcct      4380
     tacgttcgga ccacatctga aagcaacagt caaaaaatgt aaccaaagga ttcagcaact      4440
     gcgttggctt acacacagaa ggagcacttt gccgctgaga tgcaagaggg cagtatatgc      4500
     attctgtatc ctgccaatct ggctttatgg tattcaaatt tgggggatcg cagccaaatc      4560
     gaactacaaa aggttacaag tgttgcagaa tcggtttcta cgtaccatta ctgactgtcc      4620
     ctggtatgtg cgtggcacga cacttcacag agacctaaat ctacacactg tggaagaaca      4680
     gattgggaga cacacaagcc gataccgaga tagattagaa agacaccgca gcttactggc      4740
     taggaatcta ctcccagcga gacctttgag gcgtctcaaa aggcaaggct ttgccaagac      4800
     gataaggaat caataagaaa atactatata taatcctctt cttaatgctg aggtttggtt      4860
     tacttttctc attggtgaca cctgtgttgt taagtacttt aatttgctgt acagattctg      4920
     cactaaataa ataaataaag aaaaaaaaaa aaaaaaaa                              4958
//
ID   Jockey-6_DK repbase;    DNA;    INV; 3710 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3710
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1343-1343 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..698
FT                 /product="Jockey-6_DK_1p"
FT                 /translation="GHTKNHCQKLFNCVRCGLQHGVEACSKDLHPVKCVNC
FT                 GGDHTASYKGCLVYQQVANRRKSVTTPRSTVPQQPAHPIVRSNLVTSSSYA
FT                 NAVRGQVSRPQHHAPMNVLQSQQFPPLGSYNSKKSQLRHQRNPLVSSSSTT
FT                 SSSTSSSSTSSSSSSSSSTTSSSSTAAAAAAAAAAPTAATAPAAAFTTTTT
FT                 AAVFPSTTATQLAAIFQRPSVATPRANVLAIERKNFGPCRPV"
FT   CDS           819..3539
FT                 /product="Jockey-6_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLANKALELELFVQGHNIDIMLV
FT                 SETHFCSRSFYKLHGYDIHQATHPADRKRGGSAIIIKSCLQYYQFYSMQSP
FT                 NLQCVAVKVKTDHGETAIASIYCPPNFQCSADDFEKLFDDLGRNFIVAGDW
FT                 NAHHRLWGSRNSTTRGRALAGIVQRSNVQVLATGGPTHYPHSQRTPTAIDF
FT                 AVYSGIRPECLTISESFELSSDHIPLIIKLRVAAQKICHRPRILPRNANLP
FT                 RFQATVNRLVNLNMXLNSPDDIDDAVEIFIRNIHTAAEASTCGQVPNSSNP
FT                 PQALLKPEVMDLVRLKRSLRRRYMRSQDPXDKAAYRRAENDLKKLLYETKR
FT                 EYFDEMLLNADPTKSNGFNLWKCTRNIKRQPIRKIPIKKSDDTWCRSDAEI
FT                 SLAFADELEKRFQPFDLANPEDVEETLAFINAPSPEAAPIQHVSPEEVCLH
FT                 IRKLHPSKAPGFDGIDSRIAKALPKKGILFLVLLFNSMLRIHHFPSQWKCA
FT                 VITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLTRIMGVRSVQEAIPD
FT                 HQFGFRQHHGTPEQAHRVVQHILNAFENKQYSSAIFLDVKEAFDRVWHDGL
FT                 LYKLKSLLPTGQFLLLKSYLHDRSFMVEVRGERASIRMVRAGVPQGSVLGP
FT                 VLYTLFTSDLPSPNGPGTLLATYADDTAFLVNSPCRNEASRITQEFLDSYG
FT                 KWTNRWNISINNRKSQHCNFTLNGKILPRVDLHDIAIPQAPQAQYLGLILD
FT                 KRLTWKQHTTKVAASCRAKLKKLNWMLRPTSKLSLGNKMLLFKSIVVPSMT
FT                 YCIQLWGMASDSNVMKVQRVQNRALRLIANAPWYVRNKALASDLHIPSIRE
FT                 QINRHSSRYNERLTAHTNRLAASLANTSVRRRLKRRHPADLWTRGRHISRV
FT                 LKQ"
XX
SQ   Sequence 3710 BP; 1053 A; 967 C; 781 G; 906 T; 3 other;
     ttggacacac aaaaaatcat tgccaaaagc ttttcaactg cgtcagatgc ggtctgcaac        60
     acggtgtgga ggcctgctca aaggatcttc acccagtgaa gtgtgtaaac tgtggcggag       120
     accatacagc tagctataaa ggctgcctcg tttatcagca agttgctaat cgacggaaaa       180
     gtgtcacaac tcctcgcagc accgttcccc aacagccagc tcatccaata gttcggtcta       240
     accttgtaac ttcaagctcc tacgctaacg cagttcgtgg gcaagttagt cgcccccagc       300
     accatgctcc tatgaatgtc ctgcagagtc aacaatttcc cccattgggc agctacaata       360
     gtaagaaaag tcagctacgc caccaaagga accccctcgt cagcagcagc agcaccacca       420
     gcagcagcac cagcagcagc agcaccagca gcagcagctc cagcagcagc agcaccacca       480
     gcagcagcag cacagcagca gcagcagcag cagcagcagc agcaccaaca gcagcaacag       540
     caccagccgc agcattcaca acaacaacaa cagcagcagt ctttccctca acaacagcga       600
     cgcagctcgc agcaatcttt caacgaccat cagtggcaac gccaagagca aatgttcttg       660
     caatcgaacg aaagaatttc ggtccttgtc gcccagtttg acaaattatt ccaaatgatg       720
     gtgtcgatga tgggtcttgt ctctagactc ctaccacaaa cttctccagg aactgcacaa       780
     gcagtttctg gatttttccc tgctaatata gtccaacaat gagtcaaatt ggccttaaca       840
     ttggtgtgtg gaacgctgac ggacttgcca acaaagccct tgagctggag ctmtttgtgc       900
     aaggtcataa tattgatatt atgctggtca gtgaaacaca cttttgctca aggtcgttct       960
     acaaattgca cgggtacgat atccatcaag ctactcatcc tgccgatcga aaacgcggtg      1020
     gctcagcaat tattataaaa tcctgtcttc aatattacca gttctacagt atgcaaagtc      1080
     caaatttaca atgtgtagca gttaaagtta aaactgatca tggcgaaact gctattgcgt      1140
     ccatctattg tccaccaaat tttcaatgtt ctgctgacga cttcgaaaaa ctttttgacg      1200
     atcttggaag gaacttcatc gtcgcaggtg actggaatgc tcatcatcgc ctttgggggt      1260
     ctcgaaactc aactacccgc ggaagagcac tcgccggcat agttcaaagg tctaatgtcc      1320
     aggtccttgc aactggaggg cctacgcact atcctcatag ccaaagaact ccaacagcta      1380
     ttgactttgc tgtctacagt gggatacgac ctgagtgcct caccatctca gaaagttttg      1440
     agcttagctc tgatcacatc ccattgataa ttaaattaag agttgctgcg cagaaaattt      1500
     gccataggcc tcgcatcctg cctcgaaatg cgaaccttcc acgcttccaa gctacagtta      1560
     accggcttgt taacctcaac atgstgttaa actctccgga cgatatagac gacgctgtcg      1620
     agatatttat acgaaatatt cataccgctg ccgaggcctc aacctgtgga caagtaccga      1680
     actcatctaa cccacctcag gctcttttaa aacctgaggt tatggatcta gtaaggttga      1740
     agagatccct tcggcgcaga tatatgagat cccaagaccc aktcgacaaa gccgcatatc      1800
     gacgcgccga aaacgatctc aaaaagcttc tgtatgagac aaagcgcgaa tattttgatg      1860
     agatgctcct caacgctgac cccaccaaat cgaacggctt taacctctgg aaatgtaccc      1920
     ggaatattaa gcgacagccc atccgaaaga tccccattaa gaaatctgac gatacatggt      1980
     gcaggtctga tgcagagatt tcactagctt ttgcggatga actagagaag cgcttccagc      2040
     ctttcgacct cgcgaacccc gaggatgttg aagaaacatt agccttcata aatgccccct      2100
     cccctgaagc ggctccgatc caacatgtaa gcccagaaga agtttgtctt catattcgaa      2160
     agttacatcc cagtaaagcg ccgggattcg atggcattga cagcagaatt gccaaggctt      2220
     tgcctaaaaa gggaatcttg ttccttgttc tcctttttaa ctccatgctt cgtatccacc      2280
     acttcccctc tcaatggaag tgtgctgtga taacgatgat accaaagcct ggtaaaccgg      2340
     agaaccttgt tgagtcatac cgaccgataa gcttactacc caccttctct aagattttcg      2400
     agagaatatt ccttactaga ataatgggag taagaagcgt tcaggaagcc attcccgacc      2460
     accagtttgg ttttaggcag catcatggga ccccagagca agcacatcga gtcgtccagc      2520
     acattttaaa tgcttttgaa aacaagcaat acagctctgc tatttttctt gatgtcaagg      2580
     aagcttttga ccgcgtgtgg catgatggct tactttataa gttgaagtct ctactaccga      2640
     ctggccaatt cctgctttta aagtcatacc tgcacgatcg tagttttatg gttgaggtga      2700
     gaggggaaag agcaagcatt cgtatggttc gtgctggcgt tccgcaggga agtgtcctgg      2760
     gcccagtact gtacactctg ttcacttcag acctaccaag ccctaatgga ccgggcacac      2820
     ttctggccac ctatgctgac gacaccgcgt tccttgttaa ctccccctgt cgaaacgaag      2880
     cttcaaggat cacccaggaa tttctggact catacggcaa gtggaccaac aggtggaata      2940
     tttctataaa taatagaaag tcgcagcact gcaacttcac ccttaatgga aagatcctcc      3000
     ctagggttga tctccatgac atcgccatcc cacaagcacc tcaggcgcag tacttgggtc      3060
     tgatcctgga caagcggctc acctggaagc agcacacaac gaaggtagca gcttcctgtc      3120
     gtgctaagct taaaaagctc aactggatgc ttagaccaac gagcaagctc agccttggca      3180
     acaaaatgtt gctatttaag tcaattgttg tgccttcgat gacttactgc atccaattgt      3240
     ggggcatggc ttctgactcg aacgtcatga aggtccaaag agtccaaaac cgggcgctgc      3300
     gcttgattgc taatgccccc tggtacgtaa gaaacaaagc cttggcaagt gacctccaca      3360
     ttccctctat cagggagcag atcaaccggc attcaagtcg gtataacgaa cgtctcacgg      3420
     ctcacaccaa tcgcctagcg gcttcattgg ccaacacgtc agtcagaaga aggctcaaac      3480
     gtagacatcc cgccgatctc tggacaagag gaagacatat ctcgcgagtc ttaaagcagt      3540
     aactagcatt ttccacttgt cattaaaaat ttgttaattt gtttccgttt ctgttaagtg      3600
     ccatgttatt gttttgttca tatttataac caacgtttta tagccattag gttggttgat      3660
     caacgttaat aaaattttgt ttaatgttat gccaaaaaaa aaaaaaaaaa                 3710
//
ID   Jockey-6_DMo repbase;    DNA;    INV; 4470 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4470
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4470 BP; 1429 A; 1003 C; 805 G; 1233 T; 0 other;
     aaacgccaga tcctgtatta gaggcagaac gttagtaaac agtattttcc aagaaaattg        60
     caatattctg gcaactgggt cgccaacgca ttaccctttc aactcacgcc aaactccatc       120
     tgccatagac tttgcgcttt tcaaaggcat caggcgagat ttgctggcca tcactgactc       180
     tttcgagcta aactcggatc acctcccatt gcaagtccag ctggttgaga agccgatcat       240
     cagcaaagca aaaggccatc ttctggattt gaatgctaat ataagcaaat ttcaaagtta       300
     cctaaacgac agaatcttac tcaacactga aatcagcagt ccagatgatg ttgatgatgc       360
     tgttgatatt cttgtcaaaa acgtccaaga tgctgcaaac tttgccaatg cgcagtgtcc       420
     acgcaagata accagatcta ggtttcgagt caaaagccag actctccagt tgattgaggc       480
     caagaagcaa atcaaacgct atcttctaca aagccgaaat cccctggcaa aacagatctg       540
     caataggctg tcaaatcgca tcagcaaaga tataaaatct gcaaagcaaa aatatgaaga       600
     agaattattc agctctatcg accccacaga tagatacagt atgcaaaagc tctggcgact       660
     taccaacgaa atcaagcgac agccggctcc aaatctgcca ctattaaagt ccagcgatgg       720
     caatggctct aacgccaata atgtatggtg caaaacaacg gcggaaaaag ctgaagtctt       780
     tgctgatagc cttgagcaac gcttcaagcc tctcatctct gcatcacctg gcgacttggc       840
     cgaaattgag gcgcaaatta gtcagtcacc agcgtctgcc ttggtctctt ttcggccagt       900
     cacagtgaca gaggtcatta atcatattag cacgctggag aagaagaaag cagctggttt       960
     agataatatc gacaatcaca ctatcaaagc gctgccaatg agggcaatac tataccttgt      1020
     tttaatatgc aacaactcac ttcgaatggg ccattttcct accagctgga agttagcact      1080
     ggtcaagatg atacacaagc ccggcaagcc cacgcagcat gtatcatcat acaggccaat      1140
     aagtctcttg tctggcttat ctaaaatatt agagttctta attctgagcc gtatgcttga      1200
     gcaagacgca cttaccaatg ctatacccag ccaccaattt ggctttcgca aggcccactc      1260
     agctgagcaa cagcttgggc gagtcacgca gttcattctg aaatcatatg aagaacataa      1320
     gtattgctct gccgtttact tggacataaa agaagcattt gacagagtgt ggcactcagg      1380
     tctgagatac aaactcaaga tgctcttacc tgacgctctg tatcgaatcc tttgctccta      1440
     cttagcaaat cgatcattta ttgttgaatg ccatggagga tgccgctctg caaccaagca      1500
     aatacacgct ggggtgcctc aaggcagcct gcttgggcca gtgctgtata acatatacac      1560
     cagtgatatt ccaagcccaa cttatgcctc tggaaataaa atcctcttag ccacttatgc      1620
     cgatgacgtc gtagtcctct cagcaaactg tcggcaagca gatgcgttag ctcagcaaca      1680
     agcatatatt gacaaattag ctctgtgggc gaagaaatgg tgcattacaa taaatactag      1740
     taaaactatg cacattatgc atacttacaa aaggatatcg ccataccagg atatccgcat      1800
     tggcaatgaa gcaattaaaa acggcacttc acatccttat ttgggtgtca ctatggacac      1860
     aaagctgcac ttcggcactc atgtcaccac tgtcgtctcg aggattaggg cacggctgaa      1920
     taagatagat tggctgatta ataaaaatag taaattgtct ctaaaaacta aaacgataat      1980
     ttacaaacaa ctagttgcgc cactgtggca atatactata cctgtctggg gtgcgctcct      2040
     ttccgaaact cagttcgacc gcatcagagt tgcacacaac agagcactga gaaccatatc      2100
     tggcgctcaa tattatattt caaatgctcg catcagatct gagctgggcg tcttatctgt      2160
     ggatgaatta tttaataata tttgcattaa atattatgat agactgcgag tacacagcaa      2220
     caatgaggct agaagcatag cccactatcc gtttgtacca cagcggctaa ctatgcccag      2280
     atactctagc ctcgtcaata ctcacctggc taacgaaatc gagttgcgcg cacagcgaca      2340
     acagcgaaga caagcggagt tcgacgagga gctacacgct aattatcttc gccgacatcc      2400
     gcccgtatac ggcccgataa cttttcgcga gcacagccgc aacattttag cagagagatt      2460
     cacgaggtca tatccggcct caacccgcaa ctccagcgaa aatcttcgca gaatggcagc      2520
     gcgacgcaga aatgaggctc gtcgcaacgg cgcgccatcg tatgacgcag tcccacacac      2580
     tcccacctct ggggcgacac aaaatatagg tgacgctact gcctcgcagt cgcgcctgcc      2640
     aatctttcgg caactggcgc cactgccacc cacagcgagc acttcgcgca cacacaacac      2700
     aaatccagga gattcttcgg ccgatgcagg ctggtccttc cccagcaact gattgcaagc      2760
     atatacgcta aaaaagaaca taaatctgca ttaaaattca aattggccat tggtatatgc      2820
     aagcaactta cctggaaact ggtcgtcctc acatatccta tctgcaaagg gtatcctaac      2880
     aaataaaact caaattgaat tttatattca attaaagttt tatttggcac gtatgcacat      2940
     acacacatgc agcaaaacaa cactacaatg cactggctta aactacacaa tcaacttaac      3000
     taaactggcg gcactgctcg gtgattggga tgtggagtct tctcagctgc tacctctcgt      3060
     tccaccggat gattccctgc aaataaaaac aaaacaacat taagtataaa cacttatata      3120
     tatatatgta taattaacat tacctcgcag ccattttgcg tcactcactt cttcggcctg      3180
     tcgaacacac gttcacttgc acttgggaga aattgctgaa acagatgaat aatttattaa      3240
     ttaatatcta attattaata attatctcag tattcttatt agaatccata ctcatctctt      3300
     tcagttgcaa cttttgcaat aaattgcact ctgccttttc atcatatgtt cttcaaacat      3360
     atgtttttat ctgtgcatat cgatatgcat accaggggtg cacaacctct cttcgcgatt      3420
     gttttttttt ttttgcgata gttctataag acaaaatgaa aagaaaaact tattggaatt      3480
     caaatttatt atttcttaat caactataaa ctatattatt ccaaattaaa aataatatta      3540
     gtaatattgc aactgaaacc acatatgtga tagcacttgt gatatttttg cacaaatatc      3600
     gctatgaaat gaatatataa gaatattaat gaaatgaaag cttaccattt aataaataat      3660
     tattagctat aatagtatat actagtaaat ttttaagcac tattactcac attttataac      3720
     taattgtaaa ttcccattgc catttatgca tttttcgata attacctttt gttttgattt      3780
     atgcatcccg ataaacgtat aaacgcacag ctgcacaatc tctcctaaat tgcacttgcg      3840
     gtttaattta actttttaga ctgaaataaa ggtgataaaa tgaaaagaat tatagatata      3900
     agttcaagaa tttaattaaa agttatatta gcttagacaa gtatggagaa aatgaccgga      3960
     cgatgtcccg actcttctct ctaaatccaa ttagcggatc ttctcactgc taagtttgtt      4020
     gcgcatctta taggtgttcc tacaaataga attaaaagta aaatgaatta attaattgta      4080
     tcaattgtta ttgttttaat ctacataata attataacta aacctactca atagttttaa      4140
     actagttatt taagcacatc aaatgttatt catttttgtt tttgatctgc tcttttgtat      4200
     aatatgtaac gcaatgctgc acagcaattt aatgttgcac ttgcgactat ttaaacagct      4260
     catgtgagca agtttcggct aatatcgacc taagtaactt aaggcgccat gtaaattcaa      4320
     aaaaaatgct aacgaagagt attatatgaa taaagaatat ctctctattc tctcctcctc      4380
     tccatttagc tgctggtcag ctgttatggg cgagaatgga ggaaagagag attattaatg      4440
     tgtgttctgt caaggcatac aaacagaaaa                                       4470
//
ID   Jockey-6_DPer repbase;    DNA;    INV; 7822 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-7822
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1656-1656 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Tandem array, likely telomeric. Unit
CC   termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           903..3443
FT                 /product="Jockey-6_DPer_1p"
FT                 /translation="MEEKMGDQRPKCIKEEKEEKEERKMETSHQTDKTTIA
FT                 QLDLTGACITLSSSSSSELDGCSPQRTGLRQARGDPSPLHEMSVDPSCSWE
FT                 SLNEDGTFPEKVPDRRACHLPAVDVQGNGSKIKLQKTLQNGARYHLSLSTR
FT                 QRHGQQHVAARELTDPLLINVADTDYRHVAVNVADDVADDVAADDQIHAAT
FT                 NKTIDNSYLYIDKNKNNSKPKTNNSKNKNKSPKTNIKAKKSLLESLTPASR
FT                 TSMTITQSPPLTELENSNDIINNWLSDIPATTLPNMAVFSAPNYTPGKRQN
FT                 REMDTTDEDQSFHELPKQDLDFNTPKFKSDTAKRFASEFNKIKIHNPTKTN
FT                 QPLTQPSNTKDLDTGEFQDSSGPNNLQRQPLPPISMHSEMLTANNTDQIEQ
FT                 PDLFPWQEVPRSKRVPSIYISGVKTIVPLLEKLNYTAGIGRFTTKSTPGNG
FT                 IRIQCADMDAHKKITTLLNDQKVPMHTHQQIGQRGVRYILRHLHYSTTREW
FT                 ISSELKKRHYIVRYTSNMKHRSTGQPINMFEIEIEHKQDGSHDEILKISEL
FT                 GGQAVAFERKWVTRDPLQCHRCQAYGHTRNYCKNAPKCMKCASDHLSTTCT
FT                 KPRYTPAKCVNCGGEHVSCFKGCPAFKAARSKLKIDKIVNMDRSIGKALGR
FT                 PSVWEEISRHPQPNRGGPTTAGDHRKDEGDYVEGRKIPGRGFTNPFSGRTV
FT                 QPKPSLHSTEIKKRLSKMRNRERSKQTSSHKKDRIGKGRAPKTGDTNVNPA
FT                 ASHLEKFQSRLREEQMALSQSAKXMTEGPAEQENKRFEDRLNVIELSIKDI
FT                 MASISQIHTLLQNPPPKNTDNINNTTNNSEHHKTTNILNQIENKQ"
FT   CDS           3501..6887
FT                 /product="Jockey-6_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNTNNNNANHFPHSNHFPPQTLDTTGANLPNSNRLKI
FT                 AFWNACGIKNKMAELETFMTNGDIQIMMVIETRTKQSADLLKIPNYISYHT
FT                 ANPINHKKGGVVVYVKENVRHAALEPISTDFLQCTPIVIIPINNKRRNMIV
FT                 VAPTYCPPNFNWTENHFRSLLLHFDNILGGTSGFICCGDWNAKHPWWGNPR
FT                 SCRRGRALMQAVSSGARYNILATGGATHYPYDSRKRPSAIDFAVCGGITVN
FT                 RMKIHSCSSLDSDHLPITIEMCTNGADTFTQSSIGRRLITKKTNINRVKEH
FT                 LEQTINLNTEIHSGLDIDDAVKILTTNIHDAIKLATKNVNSNQRLRSGNSN
FT                 SQRRMDKARYKLDDETKALLQIKNELNLRFKIFHTEEAKTLYKAAQNTLRK
FT                 KLQKLKTNNINQQFEGINTQDRYKMAKLWKVTNTIKRQPQPNWPICTQTGN
FT                 SNQRPVWTKSNEEKAEVFVSHFEQRFKPRHTSSEKERETTQKDLDIEKQKL
FT                 TDAATKTQTRPLRPFTLPELTTEIKNLILNKSPGKDRIDNVLIKALPKKAL
FT                 LYILLIFNSMLRLGHFPQAWKHATITLLLKPNKPAQSVTSYRPISLLSGLA
FT                 KTFEKLFIKRLFDFEDFSRALPTHQFGFRKEHATEQQLARVTQFIMGAFEE
FT                 KQYCSAVFIDISEAFDRVWHTGLLYKLSKLVSLQAFKLLESYLNERTFEVI
FT                 TNNGITSRIGKIKAGVPQGSNLGPLLYSIYSSDVPLPNCLNGYHPTSIPVL
FT                 REKNRMLATYADDTIIMSRADFPLTAAKMNEQYLNKFSVWAKKWEMGINEK
FT                 KTAHVFFTLNKLSKTQQESTPKLNGQRIPNKFKQMYLGVTLDRKLSLNHHV
FT                 KAIINKTRTASIKLDWIIGCKSRLAKECKVTILKQLIMPIWFYAFPVWGAL
FT                 ASDSLVKKIQTLQNKLVRRAVRATIYTRNDNIRSVYNIKTVEEVYEKASGR
FT                 LANSLVDHSNSEVARLLTNPHVPNRLKSSRHRYDNQLRKFILPRCNGQRQE
FT                 QPNPDLDPTRYYSEAERKVIAEKYVPILRKGLPTLLRLENEEQERLEKAKM
FT                 DNREAERKKKPYKHPDRFCELQINVYRKMYAQGKFTRETILERIRGQPLGI
FT                 QRIIVPDHRGDVEEGVLQPNG"
XX
SQ   Sequence 7822 BP; 2966 A; 1774 C; 1411 G; 1670 T; 1 other;
     acacaaatta attcacttac tacgatagct tccaaacaaa ccaatcaata acctgcaaat        60
     aaaatacaaa caaaacataa acctgaaaat aaaataatat taaaatcggc caggagtttc       120
     atattcatcc acagaaagag gcatatgcgt cgccgttctt cctggagttg catcgactgg       180
     attcggccag gaaaggaggg acgaggcgat gccgcgcatg cgttgccgat gctttggagg       240
     tctccctgtc gtccatgcct ccgtttcgca ccggatgagg ggtccaggag cggcgttgca       300
     gggtttttta tgcctaagtc aaaaaaaaag aaaaagaaaa cacaagccaa tcttaacttg       360
     tttacatcga taactgtata gtatttttct gtatattttt tctgtatatt ttatcaatgt       420
     taccgtaatg ttaaaaaaat acctaaatgt taaaaaaatt gtaagtttcc ataaataatg       480
     ttaaatgttg ctaataagta ataagaacac taataaagat tgcgtcaggt cacactaagt       540
     gccctgagca agtttgaaca tcaatatagt atttttcgta tattttatca atgttaccgt       600
     aatgttaaaa aaatacctaa atgttaaaaa aattgtaagt ttccataaat aatgttaaat       660
     gttgctaata agtaataaga acactaataa agattgcgtc aggtcacact aagtgccctg       720
     agcaagtttg aacatcaaag agcaagtttg aacatcaaaa gcaagtttga acatcaaaaa       780
     tcaaaaaaat aaatcaaaaa atcaaataaa attatataca agtaaaggcc attaaaagta       840
     ttaaagaaaa gcaaataaaa gcaaggaaag tagtggtacc gaggaattgg aaaactgact       900
     acatggaaga aaaaatgggg gaccaaagac caaagtgcat aaaggaagag aaggaagaga       960
     aggaagagag gaaaatggag accagccacc aaacagacaa gacaaccatt gctcaactgg      1020
     atctgacagg tgcgtgcatc acactttctt ccagctctag ctcggagctt gatgggtgct      1080
     ccccccagag aactgggctg agacaggcac ggggagatcc atctcctctc cacgaaatgt      1140
     ccgttgatcc atcttgttcc tgggagtcac tcaatgagga cggcactttc cctgaaaaag      1200
     tgcctgatcg gcgagcctgc caccttcctg cggtagatgt ccagggaaac ggctccaaaa      1260
     tcaagctcca gaaaactctc caaaatggag cacgatatca tctctctctc tccacccgac      1320
     agcgacacgg ccagcaacat gttgcggcga gagagcttac tgacccgctt ctcattaatg      1380
     ttgctgatac agattataga catgttgctg tcaatgttgc tgacgatgtt gctgacgatg      1440
     ttgctgctga tgatcaaata catgcagcca ctaataaaac cattgacaat tcatatctat      1500
     atattgacaa aaataaaaac aattctaaac ctaaaacaaa caattccaaa aataaaaata      1560
     agtctcctaa aacgaatatc aaagcaaaaa agagtctatt agaatccctg accccggcat      1620
     cccgtacgag tatgactatc acccaatccc ctcctctgac tgagctagaa aatagtaacg      1680
     acatcataaa taattggctt agcgatatac cagcaaccac gctccctaac atggctgtct      1740
     tctcagcccc caactatacc ccgggaaaaa ggcaaaatag agaaatggac accacagacg      1800
     aggaccaatc ctttcatgaa ttaccaaaac aagatcttga tttcaacacc cctaaattca      1860
     aaagtgacac tgccaaaaga tttgcctcag aattcaataa aattaaaatt cataacccta      1920
     caaagacaaa tcagccatta acacaacctt ccaatacgaa agatcttgac acaggggaat      1980
     tccaagacag ttctgggcca aacaatcttc aacgacagcc acttccccca attagcatgc      2040
     acagcgaaat gctcactgcc aacaatactg atcagattga gcagcctgac ctattcccat      2100
     ggcaggaagt gccaaggagt aagagggtac cttccattta catctcagga gtaaaaacaa      2160
     tagtacctct tttggaaaaa ctaaactaca cagcaggaat aggtagattt acaaccaaaa      2220
     gtacccctgg gaatgggatc agaatacaat gtgctgacat ggatgcccat aaaaagatca      2280
     ccacactcct caacgaccaa aaagtaccaa tgcacacgca tcagcagatt gggcagcggg      2340
     gtgttcgata tatacttcga cacttgcatt actcaacaac aagggagtgg atttcctctg      2400
     agcttaaaaa aaggcactac atcgtgagat acaccagcaa tatgaaacat aggtctacag      2460
     gtcagcctat aaatatgttc gaaattgaaa ttgagcataa acaggacggt tctcatgatg      2520
     aaatcttaaa aatttccgag ctaggtggac aggcagtggc ttttgagagg aaatgggtga      2580
     ctagggaccc gcttcagtgt catagatgtc aggcctacgg acacactagg aactactgta      2640
     aaaacgcacc caagtgcatg aagtgcgcca gtgaccatct ctcaactaca tgcaccaaac      2700
     ccagatacac tcctgctaaa tgtgttaact gcggcggaga gcatgtcagt tgttttaagg      2760
     gttgcccggc cttcaaagct gccagaagca agctcaaaat cgacaaaatt gtcaatatgg      2820
     acaggagcat agggaaggca ctagggaggc cgagtgtatg ggaggagatc tccaggcacc      2880
     cccaaccaaa cagagggggc cccactactg caggtgacca tcgaaaggat gagggcgact      2940
     atgtcgaagg gcggaaaatt ccagggaggg gtttcactaa ccctttctca ggcagaacag      3000
     tccaacccaa gccgagcctc cacagcactg aaataaaaaa aaggctttct aagatgagaa      3060
     accgagaaag gagcaagcaa acatccagcc ataagaagga cagaataggg aagggacggg      3120
     ctccaaaaac cggtgacacg aatgtcaacc cagccgccag ccacctagag aaattccaga      3180
     gtagactgag ggaggagcag atggcgctct cgcagtctgc aaaagwaatg acagagggcc      3240
     ccgctgaaca ggagaacaag cggtttgaag acaggctcaa tgtaattgag ctcagtatta      3300
     aggacatcat ggcgtcaatt agccaaattc acactctact gcaaaaccct ccccccaaaa      3360
     atactgacaa tataaataac actacaaaca attctgaaca tcacaaaaca acaaatatcc      3420
     tcaatcaaat agaaaacaaa caataaaaca actcattgct atacattata tctaactaaa      3480
     ctagccaata atttacagac atgaacacaa acaataataa cgcaaaccat ttcccacatt      3540
     ccaatcactt tccgccacaa actcttgaca cgaccggggc aaacctgccc aactccaaca      3600
     ggcttaaaat agctttctgg aacgcctgtg ggatcaaaaa taaaatggct gaacttgaaa      3660
     cattcatgac aaatggggac atacaaatta tgatggttat tgaaactaga actaaacaga      3720
     gcgctgacct actgaaaata ccaaactata tctcatacca cactgccaat cctataaacc      3780
     acaaaaaagg gggggtcgtg gtatatgtga aagaaaatgt tagacatgct gcactggaac      3840
     ccattagcac cgatttcctt caatgtaccc caattgtaat aatcccaata aacaacaaga      3900
     ggagaaacat gatcgtggtt gcaccgacgt actgcccacc taacttcaat tggactgaga      3960
     atcatttcag atcactactc ctgcattttg acaacatatt ggggggtacc tccgggttca      4020
     tttgctgcgg agattggaat gctaagcatc catggtgggg gaaccccaga tcctgtagga      4080
     gaggacgtgc cctgatgcaa gctgtgagct ctggagccag atacaacatc ctggccacag      4140
     gaggtgccac ccactatcca tacgacagca gaaaaagacc ctcagccatc gactttgcag      4200
     tttgtggggg tattacagta aataggatga aaatccattc atgtagcagt ctggactccg      4260
     atcacctgcc aataaccatc gaaatgtgta caaatggggc cgacacattc acccaaagtt      4320
     ctataggcag acgactaatt acaaagaaaa caaatattaa cagagtaaaa gagcacttgg      4380
     aacagaccat aaacttaaac acggaaattc actcgggact ggatattgac gacgcagtaa      4440
     aaatactaac tacaaacata catgacgcga taaaactagc cactaaaaat gtaaactcca      4500
     atcaaagatt aagatctggg aattcaaaca gccaacgaag gatggacaaa gcacgctata      4560
     aactagacga tgaaactaaa gcgcttctgc aaataaaaaa cgaactgaac ctcagattta      4620
     aaatattcca cacagaagag gctaaaacac tgtacaaggc cgcccagaac accctcagga      4680
     aaaaattaca aaaattaaaa acaaacaaca ttaatcagca atttgaaggt ataaacacgc      4740
     aagacagata caaaatggca aagctctgga aagtaacaaa tacaatcaag agacagccac      4800
     aaccaaactg gcccatttgc acgcagacgg ggaactctaa ccaacgaccc gtatggacca      4860
     agagtaacga agagaaagcc gaagtatttg tctctcactt tgaacaacga tttaagccca      4920
     gacatacaag ctcagaaaag gaacgcgaga cgacacaaaa agacctagac attgagaaac      4980
     agaagctgac ggatgcagca acaaagacac aaacacgtcc tctcagacca tttacactcc      5040
     cagaactgac aaccgaaatt aaaaacttga tcttgaataa atccccaggt aaagacagaa      5100
     tagacaatgt gttaatcaag gctctcccaa agaaagccct actatatatt ctcctgatct      5160
     tcaactcaat gctgagattg ggtcacttcc cgcaagcttg gaaacacgcc acaatcacat      5220
     tacttcttaa gccaaataag cctgctcagt cggtaacatc ctatcgccca atcagtctcc      5280
     tttctggatt agctaaaacc tttgaaaaac tttttattaa acgattattt gactttgagg      5340
     atttctctag agcccttccc acacatcaat ttgggtttcg aaaagaacat gccactgaac      5400
     aacagctagc aagagtaacg caattcatta tgggggcctt cgaagaaaaa caatactgct      5460
     cagctgtttt tatagatata tctgaagcgt ttgatagagt atggcacacc ggtttgctat      5520
     ataagctatc aaaactggtg tctcttcagg ccttcaagct actagaaagc tacctaaatg      5580
     aaaggacctt cgaagtaatt accaacaatg gtattacatc gagaattgga aaaataaaag      5640
     ccggggttcc tcagggcagc aatttaggtc cacttctata cagcatttac tcatctgacg      5700
     ttccgctacc aaactgcttg aatggatatc accccacttc gataccggta ctaagggaaa      5760
     aaaacagaat gttagctacg tatgcagatg acacaattat catgagcaga gcggacttcc      5820
     ccttgacagc ggcaaaaatg aacgaacaat atttaaataa gttcagtgtt tgggctaaaa      5880
     aatgggaaat gggcattaac gaaaagaaaa cagcccacgt atttttcaca ctgaataaac      5940
     ttagcaaaac acagcaagaa agtacgccta aattaaatgg acaaagaatt cctaacaaat      6000
     tcaaacaaat gtatcttggg gttacgctcg ataggaaact tagccttaac caccatgtca      6060
     aagccattat aaataagaca agaactgcgt caattaaact tgattggatt attggctgca      6120
     aaagccggct tgccaaagaa tgcaaagtga cgatcctaaa acaattaatc atgccaattt      6180
     ggttttatgc ttttccagtc tggggtgccc tggcttctga ctcattagtg aaaaagatac      6240
     aaacactcca aaacaaacta gtgaggaggg cagttagggc cacaatatat acaagaaacg      6300
     acaatatcag aagtgtatac aatatcaaaa ctgtcgagga ggtttacgag aaggctagcg      6360
     gccgtctcgc taattcactt gtggatcact caaactccga agtggccaga ctgctgacca      6420
     acccccatgt ccctaataga ttgaaatcta gccgccacag atatgacaat caactccgga      6480
     agtttatcct cccgcgttgt aatggacaac gtcaagaaca accaaatcca gatttggatc      6540
     ctactcgata ctattccgaa gctgaacgca aagttatagc agagaagtat gtacccatcc      6600
     tgaggaaagg acttcctact ctgctgaggt tagaaaatga agaacaggaa agactggaaa      6660
     aggctaaaat ggacaataga gaggccgaac ggaagaaaaa accatacaaa cacccggaca      6720
     gattctgcga actacaaata aacgtgtaca gaaaaatgta tgctcaaggg aaatttacta      6780
     gggaaacaat acttgaaaga atcaggggcc aaccattggg tatacaaaga attatagtgc      6840
     cagaccacag aggggatgta gaggaaggcg tcctccagcc gaatggttaa gacttgatcc      6900
     aatggtacag caaaaatcca gaaagtataa acctacaaat aaaactaatt aaaagcagcc      6960
     aaaacataac ttaaaccact taccaaatca cctccaagca aaccaatcaa aacctgcaaa      7020
     taaaatacaa tcaaaatcag ccaaaacaga aataaactcg cttaccaaat tcaacgcaca      7080
     cctccaaata aaccaattga acctgcaaat aaaatacaat taaaatcagt caaaacacaa      7140
     attaatttac ttaccacgct agcattcaag caaaccaatc aatatctgca aataaaatac      7200
     aatcaaaatc agccaaaaca gaaataaact cgctttccaa attcaacgca cacctccaaa      7260
     taaaccaatt gaacctgcaa ataaaataca attaaaatca gtcaaaacac aaattaatat      7320
     acttaccacg ctagcttcca aacaaaccaa tcacaatctg caaataaaat acaattaaaa      7380
     tcagccaaaa cataaataga ctcgctcacc aaatacaacg caaacctcca aataaatcaa      7440
     ttgaacctgc aaatagaata catttaataa tcagtcaaaa cacaaatcaa ttcacttacc      7500
     acgtagcccc aaacgaacca atcaaacctg caaataaaat acaatcaaaa tcagccaaaa      7560
     cagaaataga ctcgcttacc aaatacaacg caaacctcca aataaaccaa ttgaacctgc      7620
     aaatagaata catttaataa tcagtcaaaa cacaaattaa ttcacttact acgatagcca      7680
     tcaaacaaac caatcaaaac ctgcaaataa aatacaatca aaatcagcca aaacagaaat      7740
     agactcgctt accaaataca acgcaaaact ccaaataaac caaatgaacc tgcaaataga      7800
     atacatttaa taatcagcca aa                                               7822
//
ID   Jockey-6_DRh repbase;    DNA;    INV; 3891 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3891
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1683-1683 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..1136
FT                 /product="Jockey-6_DRh_1p"
FT                 /translation="SSTKQCIIPITAYXVHTKVGNNTGNNNKNVSRPSSSQ
FT                 EQIPFHKPPPIVVDHCENLNGLIRSTDKIVDPSKYSLKCHPNNSVSIIAAD
FT                 SDAYRAITKSLTLKKVQSKYQKTLHCVRCGLQHGVEACLKDIHPVKCVNCG
FT                 GNHTASYKGCVVYQQIANRRKNVTSHRSTVPKQLTPKNXRSNSANPISYAN
FT                 AVRGQVSSPQLQQVPMTLPQSQQFPPLSSNNRMRSQHQKAPPRQQQQPSQQ
FT                 QLAPQQQQQPDHQQQSLRQQHRRNPQQLINDQQWQRQEQMFLQSNERMSVL
FT                 VAQIDKLFQMMVSMMGLVTRLLPQNTPGTAQSLAGSLPVNVTQP"
FT   CDS           1136..3829
FT                 /product="Jockey-6_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSQIGLNIGVWNADGLANKGLELELFVHSHNIDIMLV
FT                 SETHFCSRSYYKLHGYDIYQATHPADRKRGGSAIIIKSCLQCYQFYSLQSX
FT                 NVQCVSVKVKTDLGETAIASIYCPPNFQCSADDFEKLFDDLGSNFIIAGDW
FT                 NAHHRLWGSRNSTTRGRALADLVQRSNVQVLATGGPTHYPYSRRTPTAIDF
FT                 AVYGGIRSECLSITESLELSSDHIPLIIKFRVAAQKICSRPRILPRNASLP
FT                 RFQAAVNRLVNLNMVLSSPEDINDAVEMFVRNIHIAAESSTCGQVSNPSNP
FT                 PQALLKPEVMELVRLKRSLRRRYMRSQDPVDKSSYRRAEDDLKKLLYQTKR
FT                 EYFDEMLLNADPTKSYGFNLWKCTRNMKRQPLRKIPIKKADDTWCRSDSEI
FT                 SLAFADELEKRFQPFDLASPEDVEETLAFLNAPSPDALPIQHVSPEEVCLH
FT                 IRKLHPSKAPGFDGIDSRIAKALPKKGILFLVLLYNSMLRIHHFPSQWKCA
FT                 VITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLSRIMGVRSVQDAIPD
FT                 HQFGFRHHHGTPEQAHRVVQHILNAFENKQYSSAIFLDVKEAFDRVWHAGL
FT                 LHKLKSLLPTGQFLLLKSYLLDRSFMVEVRGERSSIRTARAGVPQGSVLGP
FT                 IMYTLYTSDLPCPTQPGTLLATYADDTAFLVNSSCRVEASRITQDFLDLYG
FT                 KWTNRWNIAINGRKSQHCNFTLRGKVLPRVELHHITIPQSPQAQYLGLILD
FT                 KRLTWKGHIQKIAATCRTKLRKLNWMLKPTSKLSLGNKVLLYKSIVVPSMT
FT                 YCIQLWGMASDSNVAKVQRVQNRALRRIANAPWYIRNDALGNDLHIPSVRE
FT                 QINRHSSRYNDRLAVHTNHLAASLANPTCRRRLKRRHPADLWTRG"
XX
SQ   Sequence 3891 BP; 1125 A; 1026 C; 803 G; 934 T; 3 other;
     tttcattcgc ctcttggagg gtttgagctg ggttccgccc aactgcgggg cctacgcctt        60
     gcccactagg ctaggatcac acttttcgga atcccggcaa aaggcttgaa tattcaagaa       120
     gtcggtaaag cagtacaaag cagtgcataa taccaataac ggcatacgwt gtccacacca       180
     aagttggcaa caataccgga aacaacaaca agaatgtcag tcgtccatct agcagccagg       240
     aacaaattcc cttccacaaa ccacccccaa ttgtggttga tcattgtgag aacctgaacg       300
     gacttattag atccacggac aagatcgttg acccgtccaa atactccctc aaatgccatc       360
     ccaacaactc tgtttccatt atagctgcag attcagatgc atacagagct ataacaaaat       420
     cccttaccct taaaaaagtg caaagtaagt accaaaaaac tcttcactgc gtcagatgtg       480
     gcctgcaaca cggtgtggag gcctgcttaa aagatattca ccctgtcaaa tgcgttaact       540
     gtggcggaaa ccatacagct agctataaag gctgtgtcgt atatcagcag attgctaatc       600
     gacggaaaaa tgtcacatcc catcgcagca ccgttcccaa acagctaact cctaaaaatk       660
     gtcggtcaaa ctctgctaat ccaatctcct atgctaacgc tgtccgtggt caagttagca       720
     gtccccagct ccaacaagtt cctatgactc ttccacagag tcaacagttt cccccactga       780
     gcagcaacaa caggatgcgg agtcagcatc aaaaagcacc gcctcgacag cagcagcagc       840
     catcacagca acaactggct cctcaacaac aacaacagcc agatcaccag cagcagtctc       900
     tccgtcaaca acaccgacgc aacccgcagc aattgatcaa cgaccagcaa tggcagcgtc       960
     aagagcaaat gttcctgcaa tccaacgaaa gaatgtcggt ccttgttgct cagatcgaca      1020
     agttattcca aatgatggtg tcgatgatgg gacttgtcac aagactgtta ccccaaaata      1080
     ctccaggaac agctcaatca ttagctggat ctctcccagt taatgtaaca caaccatgag      1140
     tcaaatcggc cttaacattg gtgtgtggaa cgccgacgga cttgccaaca aaggccttga      1200
     gctggagctc tttgtgcata gtcataatat tgatattatg ctggttagtg aaacacactt      1260
     ttgctcaagg tcatactaca aattgcacgg gtacgatatt tatcaagcaa ctcatcctgc      1320
     cgatagaaaa cgcggtggct ctgcaattat aataaaatcc tgtctacaat gttaccagtt      1380
     ctatagtcta caaagtcmaa atgttcaatg tgtctcagtc aaagtcaaaa ccgaccttgg      1440
     cgagacagct attgcgtcta tatattgtcc accaaacttt caatgttctg ctgacgactt      1500
     tgaaaagctc tttgacgatc tgggatcaaa tttcataatc gcaggggact ggaatgctca      1560
     ccaccgtttg tgggggtctc gaaactcaac cacccgcgga agagctctcg cagaccttgt      1620
     tcaaagatcc aatgtccagg tccttgcaac cggagggcct acgcattatc catatagccg      1680
     aagaacacca acagccattg actttgctgt atacggcggg atacggtctg agtgtctttc      1740
     cattacagaa agtcttgagc ttagctctga tcacatccca ttgatcatca aattcagagt      1800
     cgctgcgcaa aaaatttgct ccaggcctcg catccttcct cgaaatgcga gccttcctcg      1860
     ctttcaagca gcagtcaacc ggcttgttaa cctcaatatg gtgttaagct ctcctgagga      1920
     catcaacgac gctgtggaga tgtttgtccg gaatattcat atcgctgccg agtcctcaac      1980
     ctgtggacaa gtctcaaacc cttccaaccc acctcaggct cttttaaaac ctgaggtaat      2040
     ggaactggta aggttgaaaa gatccctacg tcgcagatat atgagatctc aagatccagt      2100
     cgacaaaagt tcatatcgtc gtgccgaaga tgatcttaaa aaacttctgt accaaaccaa      2160
     gcgcgaatat tttgatgaaa tgctcctcaa cgcggatccc accaaatcgt acggcttcaa      2220
     cctttggaaa tgtacacgaa atatgaaacg acagcctctt cgaaagatcc ccataaaaaa      2280
     agctgacgac acatggtgca gatctgactc agagatttct ctagcttttg cggacgaact      2340
     agagaaacgc tttcagcctt ttgacctcgc gagtcccgag gatgttgaag aaacactggc      2400
     ctttcttaat gctccttccc cggatgcact accgatccaa catgttagcc cagaagaagt      2460
     ctgccttcat attcgaaagt tacatcccag taaggcgcct ggattcgatg gcattgatag      2520
     cagaattgcc aaggctttgc ctaaaaaggg aatcctgttc cttgtcctcc tctataattc      2580
     aatgctacgt atccaccact ttccatccca atggaagtgt gctgtgataa cgatgatacc      2640
     aaagccagga aaaccggaga accttgtcga gtcataccga ccgataagct tactgcccac      2700
     tttctctaaa atattcgaga ggatatttct tagtagaatt atgggcgtaa gaagcgtgca      2760
     ggacgccatt cccgaccacc agtttggttt taggcatcat catgggacac cagaacaagc      2820
     acatagagtc gttcaacaca ttttaaatgc ttttgaaaat aagcaataca gttctgctat      2880
     tttcctcgac gtcaaggaag cctttgaccg cgtttggcat gctggattac tccataagtt      2940
     gaagtccctg ctcccgaccg gccaattcct cttattaaaa tcatacttgc ttgatcgaag      3000
     ttttatggtc gaggtaagag gggaaaggtc aagcattaga actgctcgag ctggcgttcc      3060
     acagggaagc gtcctgggtc ccattatgta cactctgtac acttcggatc tgccatgtcc      3120
     tacacaaccg ggcacacttc tggccaccta cgctgacgac actgcctttc ttgtgaactc      3180
     ctcctgccga gtcgaggcat caaggatcac ccaggacttc ctggatctgt acggcaagtg      3240
     gacaaacagg tggaatattg ctattaatgg aagaaagtcg caacattgca attttactct      3300
     tagaggaaag gtgcttccta gagttgaact ccaccatatc accatcccgc aatcacccca      3360
     ggcgcagtac ttgggtctga tcctggacaa gcggctcacc tggaaagggc acatccaaaa      3420
     aattgcagcc acctgtcgca ctaaactcag gaagctgaat tggatgctta agcctacgag      3480
     caagctcagc cttggcaaca aagtgttgct ctataaatca attgtggtgc cctcaatgac      3540
     ctactgcatc caattatggg gcatggcttc agactctaat gtggctaaag ttcaaagagt      3600
     ccaaaaccgg gcgctgcgca ggattgcaaa tgcgccctgg tacatcagga acgacgccct      3660
     aggaaatgac ctccacattc cttctgtcag ggaacagata aaccgccact cgagtcggta      3720
     caacgatcga ctcgctgtcc acaccaacca cctagcagct tccctggcca acccgacgtg      3780
     tagacgaaga ctgaagcgaa gacaccccgc cgatctctgg acaagaggat gactcaagtc      3840
     cttaagcatt aaccatttac tgttaatttg ttataaaatt tgttaatcac t               3891
//
ID   Jockey-6_DTa repbase;    DNA;    INV; 4851 BP.
XX
AC   .
XX
DT   11-DEC-2012 (Rel. 19.10, Created)
DT   11-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4851
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2825-2825 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1964..4687
FT                 /product="Jockey-6_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 Reverse transcriptase."
FT                 /translation="MTNYGLNIIIWNANNLGSKSLEVEHFLQERNIDILLI
FT                 SETHFTSRSFFRIHGYAVHCANHPDDRNRGGAAIIIKSSLDYHLSTTITEP
FT                 HLQAIAISLVTSFGRISFSAVYCPPGHRHLWPAAEFLRLFGSVGSRFIIGG
FT                 DWNAHHSFWGCRRSCPRGNTLMSVVSSSTMQILATGGPTHFPWINNHLPTA
FT                 IDFAVYRGIPCSHLSISECSGLSSDHIPLLIYFSVAAYQVITKTRLLPRGS
FT                 DIRSFSARLTALTEENPPLVTADDVDSFAQVLVDKIHQAAPPARSVPIPPP
FT                 TWASSKPEIAVLARQGRTLRRVWMRTRHTLDLARWRAAVSELRKVLRLAKS
FT                 EFFVNHLSAIDPNQDHGFALWKCTRNLKRQPLHRFSLKRSDGTWAHSDSEI
FT                 ADVFADDLENRFTPFDFATDQEVRATISRFGLSFGPPVVVRPVDEEEVRDH
FT                 IKRLVPTKAPGMDKVDGKVAKSLPNSVIAQLCLLFNASLNLGHFPSPWKSA
FT                 LVTMVPKKGKDPCSPESYRPISLLSTFSKIFERIVLNRLLDIDTFNDALPN
FT                 HQFGFRSRHSAVEQVHRVVNHILDALEGHKYCSAVFLDVRQAFDRVWHEGL
FT                 FYKLMPLLPEGLWKLIVSFLDHRMFAVDIRGHLSGLRLIRAGVPQGSVLGP
FT                 VLYTIYTSDLPNPVVRGTLLATYADDTAFLATGSTPSSASWRVQTFLNEFE
FT                 CWASRWNIALNVDKTQHATFALRPGRSRSLYLDGDRLKHEQRVTYLGVTLD
FT                 RRLCWKGQIDRVCGSARTKLDKMDWLLRSDSGLSLQAKVRLFKAIVLPTLN
FT                 WGITCWGTACDTSLRRVQTCITKALRRMLGVKWHHYVENSVLFRDTGVPTV
FT                 TEMITQFSNRYRDRLLVHSNRLARRLATPLGRRRLRRRHPADLWILGRDRH
FT                 GRLL"
FT   CDS           join(216..725,658..1968)
FT                 /product="Jockey-6_DTa_1p"
FT                 /note="3 Zinc finger motifs."
FT                 /translation="MSDARAPMSKDVYYFRAESTADGRENKVAHSKDNESH
FT                 GTKHSVSAKDQVSRPPVNTDEVVKEAVFKASRNAKATAFDANRCLSDVSDE
FT                 SAYEDLEMINVDVKSNKQISPRWISKSVADEERFTQVKYLRKRRNLDQLNG
FT                 STHKSALLKSDQDQNHPQASVKKCELTVTPFSRTRIKTILRLLLKNVNLLS
FT                 PPSNREKPSSSYLGTNNSFGILSDDEDTMNSTGDTLLPQSDNCTMFSANAS
FT                 AQSKNKKREPRPPPFLLRGVTDFKQLIGLLSPVTTGFRLKTTGRSSCRITV
FT                 DDGSIYRVVQKLFKDNGIPYSTFQFKNERAFRIVIKGLNASTEVDEIIARL
FT                 KELGHNPRNVYNPPGENGKAKRDIFFVELEPAKNNKDVYNIRVIDYQVVTI
FT                 KPQIQRKGPLRCFKCQSFNHSKNFCMFSPKCARCAGDHDTKEKDKCPALKE
FT                 DQFKCINCGSNHSASSRSCPAYLEQCEKRKSNSTPERQRSQKQTVAAPIPS
FT                 QNAWFPLRPPVSSSQPLTSSNSFKNLLSPLSQPNFENTTKASVVEQPAQDR
FT                 LLEFINNLQKQQEAAVNAQAAAIEKLLERFDQMMSVMTTTLQMLQSVMSKH
FT                 AIESTRRND"
XX
SQ   Sequence 4851 BP; 1297 A; 1141 C; 1063 G; 1350 T; 0 other;
     agtttcgact ttagtgtcaa gctaaccggt tgtgtttatt tcggagatcc cgtgtttcat        60
     aaaaattgta taaaaatttg attttttttc atcatttttt ggttttttct ctgcgttctg       120
     tagcttttgc cggccttgcc cacgctattg gcaggtcggc tgttccacta actgtttctt       180
     ttccgaattc tattagtttc ggtacgacgg ttgcaatgtc ggatgctaga gctccaatga       240
     gcaaagatgt ctattatttt cgagctgaat ctacggccga cggtcgtgaa aataaggtag       300
     ctcactcgaa ggataacgaa tcacatggaa cgaaacattc agtctctgcc aaagaccaag       360
     tatctcgacc gccagtaaat accgatgagg tcgtaaaaga agccgtgttc aaggcatcca       420
     gaaatgccaa ggcaactgcc tttgatgcaa ataggtgcct ctctgacgtt tctgatgaat       480
     cagcttacga ggatctagaa atgattaatg ttgatgtgaa gtcgaataag caaataagcc       540
     ccaggtggat tagcaagagt gttgctgatg aagagcgttt cactcaggta aagtacctaa       600
     gaaaaagaag gaaccttgac caactcaatg gtagtactca taagtctgca cttctaaagt       660
     cggaccagga tcaaaaccat cctcaggctt ctgttaaaaa atgtgaactt actgtcaccc       720
     ccttctaata gagaaaagcc ctcatcctca tatttaggaa cgaataatag ttttggtatt       780
     ctatctgatg atgaagatac aatgaactct actggcgata cactcttgcc ccaatctgat       840
     aactgcacga tgttttcggc caatgcctct gcccaaagca agaataagaa gcgagaacct       900
     cgtcctccac cctttttatt aagaggcgtc acggatttta agcaactgat aggattacta       960
     tcacccgtga ctactggctt tcgccttaag acaactggac gatcctcctg tagaattact      1020
     gtggatgatg gcagtatata ccgtgttgtc caaaaactat tcaaggacaa tggaattcca      1080
     tacagcactt ttcaattcaa aaacgagaga gctttccgaa ttgtcattaa gggccttaat      1140
     gcttcaactg aagttgatga aatcattgcc agactcaaag aattggggca caaccctcga      1200
     aatgtatata accctcctgg tgaaaatggc aaggccaaac gcgacatatt ctttgttgaa      1260
     ttagaaccag ctaaaaataa caaagatgtt tataacattc gagtaattga ttatcaagtg      1320
     gttactataa aaccacagat tcaaagaaag ggccctttaa ggtgttttaa atgtcaatcg      1380
     tttaatcatt caaaaaactt ttgcatgttt tcacctaaat gtgctaggtg cgctggcgac      1440
     catgacacca aggagaagga taaatgccca gctctgaaag aggatcagtt taagtgtatc      1500
     aactgtggct caaatcatag tgcttcctcc cgcagttgtc ctgcctatct agaacagtgt      1560
     gagaaacgca aatctaatag cactccagaa cgtcaacgtt ctcaaaagca aacggttgct      1620
     gctccgatcc caagccagaa tgcttggttc cctttgcgtc ctcctgtttc ctcaagtcag      1680
     ccattgacgt catcaaattc atttaaaaat ttattgagtc cgctaagtca gcctaatttt      1740
     gaaaatacta ctaaggcctc tgtggtagaa caacctgctc aggacagact cttggaattt      1800
     attaataact tacaaaagca gcaagaggct gctgtaaatg cccaagcggc ggcaattgaa      1860
     aaactactgg aacgttttga tcaaatgatg tcagtcatga cgacgacgct gcaaatgcta      1920
     cagagcgtga tgtccaagca cgccattgag tcaacgcgcc gcaatgacta actacggatt      1980
     aaatataata atatggaacg ctaacaattt aggtagcaaa tccttggagg tggagcactt      2040
     cctccaggaa cgtaacattg atattttgtt aatctcagag actcatttta ccagccgttc      2100
     attctttcga atccatggat atgctgtgca ctgcgccaac caccctgatg atagaaatcg      2160
     gggtggtgct gctatcatta ttaaatcgtc cctggactat cacctgagca ccacaataac      2220
     tgagcctcat ctgcaagcaa ttgctataag tttggtcacg tcgtttggaa gaatttcgtt      2280
     tagcgctgtc tactgtcctc ctggtcatcg tcacttgtgg ccagctgcgg aatttctgcg      2340
     ccttttcggc tctgtgggta gccgctttat tattggaggt gattggaatg cacaccatag      2400
     cttctggggt tgcagacggt cctgccctcg tggaaacact ctgatgtctg ttgtctctag      2460
     ctcaaccatg cagattctgg ccacgggggg acccacgcat tttccctgga ttaataatca      2520
     tcttccgact gccattgatt ttgcagtgta tagaggtatc ccgtgcagcc acctttccat      2580
     ctctgaatgt tcgggccttt cttctgatca tatcccgctc ctgatatatt tctctgtggc      2640
     tgcctatcag gtcatcacca aaactaggct tctacctcgg ggctcggata ttagaagttt      2700
     cagtgccagg ctcactgctt tgactgaaga aaaccctccg cttgtcactg cggatgacgt      2760
     tgattcgttt gctcaggttt tggtagacaa gatccatcaa gccgcccctc ctgctagaag      2820
     tgtacctata ccgccgccaa catgggcttc ttcgaaacct gaaattgcag tcttggccag      2880
     acaaggtcgt acacttcgcc gcgtttggat gaggacaagg cataccctgg acttggcaag      2940
     gtggagggct gccgtgtcag aacttcgaaa agtccttcga ttggcaaaat ctgaattttt      3000
     cgtgaatcat ctcagtgcca ttgatcccaa ccaggatcat gggtttgcat tatggaaatg      3060
     cacacgaaat ctgaaaagac aacctcttca caggttttct cttaaacgaa gcgatggcac      3120
     ttgggctcac agtgattctg aaatagcaga tgtatttgca gatgatctgg aaaaccgatt      3180
     tactccgttc gatttcgcaa ctgaccagga agttcgagcc acaatttcta ggtttggact      3240
     ctctttcggt cctcctgttg ttgtgcgacc agtggatgag gaagaggtcc gtgatcatat      3300
     taaacgattg gtcccaacaa aagctcctgg tatggataag gtcgatggta aagttgcaaa      3360
     gtcacttccc aactctgtca ttgcacagct ctgccttctc tttaatgcgt cactcaacct      3420
     tggccatttt ccatcacctt ggaaaagtgc tctagttaca atggtcccca aaaagggcaa      3480
     agatccgtgc tcccctgagt cctacaggcc aataagtctc ctgtccacgt tttccaagat      3540
     ttttgagcgg atcgtactta acaggctcct ggatattgac acctttaatg acgctctacc      3600
     aaaccatcaa tttggtttcc gtagtcgcca ctccgctgtc gaacaggttc acagagtcgt      3660
     aaaccacatt ctagatgcct tagaaggtca taaatattgc tcggctgttt ttcttgatgt      3720
     cagacaggct tttgacaggg tttggcatga aggtctattc tataaattaa tgccactact      3780
     gcctgaggga ctctggaagc tcattgtgtc atttctggac cataggatgt ttgccgttga      3840
     cattcgtgga catctttctg gactacgtct aattcgtgct ggtgtcccac agggaagcgt      3900
     ccttggcccg gttctgtaca caatttacac ttcggatctc ccaaacccag tggttcgtgg      3960
     tactctcctt gccacctatg cagatgatac tgcattccta gctactggca gcaccccctc      4020
     ctcggcctcg tggcgtgtcc agacattttt gaacgagttt gaatgttggg cctctcgttg      4080
     gaatattgcg ctaaacgttg ataaaacgca acacgccacc tttgcccttc gacctggccg      4140
     atcccgcagt ctttacttgg atggtgatag acttaagcac gagcagagag taacatacct      4200
     cggtgttacc ttagaccgcc gtctatgctg gaagggtcag attgaccgtg tctgtgggtc      4260
     agcgaggacg aaactggaca aaatggactg gctacttcgc tcagatagcg gattatccct      4320
     tcaggccaag gtgcggctct ttaaagccat tgttctcccg accctaaatt ggggaataac      4380
     atgctggggc accgcttgcg acacgtcgct aagaagggtt cagacttgca tcacaaaagc      4440
     attacggagg atgcttgggg tgaagtggca tcattacgtt gaaaatagcg ttttatttcg      4500
     agacacagga gtaccaacag tgactgagat gataactcag ttctcgaatc gatacaggga      4560
     tcggcttctg gtgcattcta accgcctggc tagacgtctt gccacaccac tgggccgacg      4620
     tcgtctccgc agacgacacc cggcggactt atggattctc ggccgtgata gacacgggcg      4680
     acttttataa ttaacccaga tgaagtaaca tgccccactg tggctcaact acccgcagat      4740
     ttcgggatta tttttcttta actatatgac gacaaacatg aaaacaagaa ctattttctt      4800
     gtgaggcgtg ttaaataaaa atgtgcctac ttcggcttat accaaaaaaa a               4851
//
ID   Jockey-6_DVi repbase;    DNA;    INV; 3957 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3957
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1947-1947 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..1051
FT                 /product="Jockey-6_DVi_1p"
FT                 /translation="MEQALDSCVGANNYSIRTSKFGVSRIYTANSDAFRAA
FT                 VRHLTKLNCQFXHHQLREEKPYRVVVKGVNANVPKPQIAQAFTDQGFETLN
FT                 IYCPRKADWRNVQVNETDDEATINYKTRQNQFFVNLKQGPNVSNALKITQL
FT                 GRYRVSVERAPRRKEVLQCLRCHTFGHSKNYCLQDPICGKCAGSHMTGSLL
FT                 CTSENFLCVNCGGDHASTDKDCPVRIEKSKKLKPIPRLPATGNTARPKYNQ
FT                 GPSRGFIPAETVRCSMSYADVARPNRAESGPNADKHLQRETNSLPDKKLDA
FT                 LESSIRDLNSRMDQLFKLVQETMEANKAFRELVQVLISSIQK"
FT   CDS           1051..3747
FT                 /product="Jockey-6_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMQPIIKIGLWNARGLVRGSGELRLFLSANNIDVMFV
FT                 TETHMKEGQRVFLPGYSTYHAFHPSGNSRGGATVIVRSSMCHIPQSPISTN
FT                 NIQLARVNLQTSEGPVALASLYLPPKEPCTKXEFADGDYNAKHSWWGNSTN
FT                 CSRGKILQDVVANDRYQILATGEPTFYSSNSLVSTSALDFFIINGYAMSRL
FT                 NVKTLHELSSDHTPLIADLHATPISKSQRSCLLARGADTEIFRAHLEQLVD
FT                 LNMEIQDADDIDNAIDIFMSKLKDAATRAAPRNQQHLHGDRSPQLPPIIVE
FT                 LLRLKRKVRKEYARTGDARIQQIHNRLANRLHKVLARRKRIQIDNMLENLG
FT                 TDVSTNFSLWKITKRYKTLATPKSAIRDPSGSWCRTSLDKTEVFANNLEQR
FT                 FRPHYFAPESHCRIVAEALETPFQMALPSDTVTLDEVKQLVSKLKPNKAPG
FT                 EDLLDNRTIRLLPDQALLFLVLIFNSVLRVGYFPRAWKSANIIMILKPGKQ
FT                 PTDVDSYRPISLLPSLSKIMERLILNRMLDLETVTLAIPKFQFGFRKQHGT
FT                 PEQLHRVVNFALEAIEKKEYAVAVFLDIQQAFDRVWHPGLLYKAKRLLTPQ
FT                 LFQVIKSFLEGRTFRVADDGCKSSIKSIEAGVPQGSVLGPTLYSIFSADIP
FT                 NHMAITSVDKSDTLIATYADDTAVLTKSSCILLAKGALQEFLDAFQEWASK
FT                 WNVCINAGKCANVTFTNRVQNCPVVSLNGRVLDHSLAHRYLGVILDRSLTF
FT                 ERHVTSLQHSYRAKLNKMSWLLSAKNKLSLENKVKIYKCILAPSLFYAIQV
FT                 YGITAKSHLNKIRVLQAKTLRMISGSPWYIRTRNIERDLKVPKIGDRIQVI
FT                 AQKYTERLGAHPNSLARRLNTACHRTRVRRRLKRHHPQDLLNRVLT"
XX
SQ   Sequence 3957 BP; 1177 A; 956 C; 859 G; 963 T; 2 other;
     ctcaaagcct ccagcaatat gtgtaccaca agtcaacaat cccttaggca tggaacaagc        60
     actagactcg tgcgtgggtg ccaacaacta tagcattcgc acctctaagt tcggtgtatc       120
     acggatatac accgcaaact ctgacgcttt ccgagcagct gtaagacatt tgacaaaact       180
     taactgtcaa ttcwggcacc atcaacttag ggaggaaaag ccttacaggg ttgtcgtcaa       240
     gggcgttaat gccaacgtcc ccaaaccaca aattgcgcaa gcttttactg accagggttt       300
     cgaaactctc aatatatatt gcccaagaaa ggcagattgg cgtaacgttc aggtcaacga       360
     gacagacgat gaagcgacga tcaactacaa gactaggcaa aatcaatttt ttgtcaatct       420
     aaaacaagga cccaatgtgt ctaatgcttt gaaaattaca caactcggca gatacagagt       480
     ctcagtggag cgtgctcctc gcagaaaaga agttctacaa tgtctaagat gccacacctt       540
     cggtcattcc aaaaattatt gtctccagga cccaatctgt ggcaaatgcg ctggctctca       600
     tatgactggt tctctgcttt gcacgagtga aaatttcctg tgcgtcaact gcggtggtga       660
     tcacgcgtcg accgacaaag actgccctgt caggattgag aaaagcaaaa aactgaaacc       720
     gatcccaagg ctccctgcta ctggcaacac tgccaggcca aaatataacc aaggcccatc       780
     acgtggcttc atcccggctg agactgtcag atgcagtatg tcttacgccg acgttgctcg       840
     gcccaacagg gcggaatctg gtccaaatgc tgacaagcat cttcagcgag aaacaaactc       900
     actgcctgac aagaaattgg atgcgctaga gagctctata cgggatctca actccagaat       960
     ggaccaatta ttcaagttgg ttcaagagac tatggaggct aacaaggcct tccgagaatt      1020
     ggtccaggtt ctcatttcaa gtatccaaaa atgatgcaac cgatcattaa aatcggattg      1080
     tggaacgcac ggggactagt taggggctct ggagagctcc ggctgtttct tagtgcaaat      1140
     aatatagatg taatgtttgt cacagagaca catatgaaag agggacagcg tgtcttcctg      1200
     ccaggctact ccacctacca tgccttccac cccagcggta acagcagagg tggcgccaca      1260
     gtcattgtgc gctccagcat gtgccacatt cctcagtctc ccatctcaac aaacaacata      1320
     cagctagcaa gagtgaatct gcagacatcg gaagggcccg tcgctctagc atctttgtat      1380
     cttcctccca aagagccttg tactaaagsg gaatttgcag atggtgacta caacgccaag      1440
     cactcatggt ggggcaactc aacaaattgc tccagaggca aaatattgca ggatgtagtg      1500
     gcgaatgatc ggtaccaaat tcttgcaacg ggtgagccta cattctactc atccaactcc      1560
     ctagtgtcaa catcagcgct agattttttt atcattaatg gatacgcaat gagcaggctt      1620
     aatgtgaaaa cgcttcatga gctctcttcg gatcacacac cacttatagc tgatttacac      1680
     gccactccga taagcaagtc acagcgctct tgtttactag cacgcggtgc tgatacagaa      1740
     attttcaggg cccatctgga gcagctggtt gatctaaata tggaaattca agacgcagat      1800
     gatattgata acgcaatcga tatttttatg agcaagctga aagatgctgc aacaagagct      1860
     gctcctagga atcaacaaca tctgcatgga gatagatcgc ctcagcttcc tcctataatc      1920
     gttgagctcc tgcgtctcaa gcgtaaagta agaaaggagt atgcaagaac aggagatgcc      1980
     cgaatccaac agattcacaa caggctggct aatcgtcttc acaaagttct ggctcgcagg      2040
     aaaagaattc aaattgacaa catgttggaa aacttgggta ccgatgtttc tactaatttc      2100
     tctctgtgga aaattactaa gagatataag acgttggcaa caccgaaatc ggctattagg      2160
     gacccttcag ggagctggtg ccgcactagt cttgacaaaa cggaagtatt tgcaaacaat      2220
     ctcgagcaac gattcaggcc gcactacttt gcacccgaga gtcactgcag gatagttgcg      2280
     gaggcattgg aaacaccgtt tcaaatggct ttgccttcag atactgtgac actggacgaa      2340
     gtgaagcagc tggtgtcaaa gcttaaaccc aataaggccc ctggcgaaga cttactcgat      2400
     aacagaacca taagactcct accagatcaa gcactgttgt ttttggtgct tattttcaac      2460
     agcgtcctac gtgtgggata ctttccgaga gcctggaagt cggctaacat tattatgatc      2520
     ctcaagcctg gaaagcaacc aactgatgtg gactcttata ggccgatcag ccttcttcct      2580
     tcactgagca aaataatgga gaggttgatt ctaaacagaa tgctggatct cgagactgtt      2640
     acccttgcga tccctaaatt tcaatttgga tttcgcaagc agcatggcac tccagaacag      2700
     ctgcatagag ttgtcaactt tgcgctagag gccatagaga agaaagagta tgcggtcgct      2760
     gtcttcctgg acatacagca agctttcgac agggtgtggc accctggact tctttacaaa      2820
     gccaagagac tcttaacccc ccagctgttc caggttataa agagcttctt agaagggcgc      2880
     acattccgag tggctgacga tgggtgcaag tcctccatta aatcaatcga ggctggcgtt      2940
     ccccagggca gtgttctagg ccccacactg tactcgatat tttcagcgga tataccaaac      3000
     catatggcaa tcacctcagt cgacaaaagc gatacgctaa tagcgaccta cgccgacgac      3060
     actgcggtgc tcacaaaaag cagttgcata ctactagcca aaggtgcact gcaggagttt      3120
     ttggacgcat tccaggaatg ggcatcgaaa tggaatgtgt gcataaacgc aggtaaatgt      3180
     gcaaacgtga ctttcacaaa tcgagtgcag aactgcccag tcgtatcact taatggaaga      3240
     gtactggatc attcacttgc gcacaggtac ttaggtgtca tcctagacag aagccttacc      3300
     ttcgaaagac atgtcacgtc actgcagcac tcatatagag ccaaattaaa caagatgtcc      3360
     tggttactct ccgccaaaaa caaattgtcg ctggagaaca aggtcaaaat atacaagtgc      3420
     attttagctc ccagcctatt ctatgccata caggtgtacg gtattactgc caagtcgcac      3480
     ctgaataaga tccgtgtgct acaagctaag accttgagga tgatctctgg gtctccatgg      3540
     tacataagga cacgtaacat tgagcgcgac cttaaggtgc ccaaaatagg tgacagaatt      3600
     caagtgattg cccaaaaata cacggagagg ctaggagctc atccaaacag tttagctaga      3660
     cgcctaaata ctgcctgtca ccgtacaaga gtaaggagga gactcaaacg ccatcaccct      3720
     caagacctcc tgaaccgggt cttgacataa atatctcata ctaaaattta gacgatctcc      3780
     ccagtatcac cccttaagcc tcccccttat aagttatctt taattcattg ttatgttcta      3840
     tcataaatta ttttgttatt tttagtttaa ttttctgatt agtttaagtt gccttgcaag      3900
     gtagcagcac acttatctcg ttaaataaat ttcattatta cctttaaaaa aaaaaaa         3957
//
ID   Jockey-6_DYa repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4561
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1927-1927 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~97% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1533..4415
FT                 /product="Jockey-6_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFTSQICGLQFGTRQKANGTTTKQFRSNDTYLAAEHG
FT                 GVYGVYADNHARSNAQSKHVDTIACITTIKIIIFMASLRISTWNANGVSQH
FT                 KLELAQFLLEKHIDVMLLSETHLTNKYNFNIRGYIFYGTNHPDGKAHGGTG
FT                 ILIRSRLKHHCHIETAKNYLQATSLKIHLDNGNQLTLAAVYCPPRSTLSED
FT                 QFMEFFNSLGEHFIAAGDYNAKHTHWGSRLVNPKGKQLYNAIIKANNKLDH
FT                 VSPGTPTYWPTDPKKLPDLIDFAVTKNIPRNLISAECLSDLSSDHSPLLIN
FT                 LLRHPEPANLSYKLTSEKTNWLKYKKYISSHIELNPPLEAEADIDSFVNSL
FT                 ESIIVAAARCSTPQTVSKITNHKKTNLQIEQLVLEKRRLRREWQSSRSPSA
FT                 KQKLKDATRKLTKALKQEEELAQRTYIEKLSTSSTKNSLWKAHPTLGSPTV
FT                 PVVPIRNHTGGWARSDKNRASTFATHLQKVFQPNSATNTFEIPPATDDSQX
FT                 HHAPVVFRSNEISKIIKEHLNPKKSAGCDLITPKMIIELPYCAVCSITQLF
FT                 NAINKLGYFPGRWKXSTIIMIPKPGKDHTVPSSYRPISLLSCLSKLFEKCL
FT                 LSLTITPFLNTHNTIPAHQFGFREKHGTIEQVNRITSEIRNAFEKREYCSA
FT                 IFLDVSQAFDRVWLDGLMYKIKTTLPNNTHKLLESYLYNRKFVVRCNTAIS
FT                 DEHSIEAGVPQGSVLGPTLYVLXTADIPTSSNLTVSTFADDTAILSRSRCP
FT                 IKASSQLAIYLVDVEKWLSDWRIKVNEQKCKQVTFTLNRQDCPPLTLNNVA
FT                 LPTANEVTYLGVHLDRRLTWRRHIEAKRTHLKLKANSLHWLINSRSPLSLD
FT                 FKVLLYNSVLKPIWTYGCQLWGNASNSNIDIVQRAQTKILRTITGAPWYVR
FT                 NASIHKDLNVPPVKDEIAEKKEKYLNKLSTHPNQLARSLTRLSSRSRLRRN
FT                 DLPTQQ"
XX
SQ   Sequence 4561 BP; 1590 A; 1194 C; 819 G; 953 T; 5 other;
     aatcgaaaca gtgaagtgaa ccaaacataa aatcataagc gaaaagacgc tcagtgcaat        60
     gcctgcacat atagattttc taacaaatcc ataagatatt aatcttcaat taactaatta       120
     caaatataaa caaactaacc aaaaacaatg agtgaaaacg aagctcgcgc gcagcgtcaa       180
     cgtcagcaag atgagcgacg gctctctttg caacgcaaca acgcttactt ttccgtcgtc       240
     tcggaatcga accgcgagcg gtcaatcacc cccaacccga cagctgatcc ttctctctta       300
     acacgcgaca gtgaacgctc ttgctccccg tcgccgtcaa taactaaaac aacaccgatg       360
     ccgactgccc gctcagcaca tacaaacaca acgaaagctg cgcagacagc aaaacaaact       420
     gcaacaaacg aaaaagaaaa cgcaaagccg gccatacaga ctggaatgga tcgctacata       480
     caaataaaac gaaagctaag cccccaaaaa atgtaaacaa accaaaaatc acacgcgcca       540
     acgccaacac aactttaggc gaagtaccga acaatgccaa caggttcgac attttggcag       600
     acactattga agacctgccc gttgaagctg atggaagcga caagaataag ccaaagccac       660
     caccaatatt tgtacgtgag aaaagctcwa gtacatttgt aaacaatgta ataaagctca       720
     taggtgacgc aaatttccac ataattccct tagttagggg caacattcat gaaactaaag       780
     ttcagaccaa gtctgaacaa cactttagag ccttaacaaa gtatctggac gamggagaaa       840
     aaagctatta cacataccag ctaaaaagct gcaagggtct gcaagtcgta ctaaagggca       900
     tagagcctga tgtaacacca gacgaaataa agctggcgct acaggataaa ggatttaccg       960
     caaaatcagt cttcaacatc ttaaacaaaa atagacagcc gcaaccactc ttcaaggtgg      1020
     aacttgcacc agaagcaaag atgccgaaaa gaaacgatgt gcatccaatc tacaaactcc      1080
     aatttttact acatcgtaga atcactgtag aagaacctca caaacgtaac aatctggtac      1140
     aatgtatgaa ctgccaagaa tacggccata caaagtctta ctgtaagctg cgcccagtgt      1200
     gcgtagtctg tggcgagctc cacgacaaag ccagctgcag tgcacccaaa gaagactcaa      1260
     gcagaaaaaa gtgtggcaac tgtggaggca atcacacagc caactacaga ggctgcccag      1320
     tatacaaaga tctcaaaagc cgcattaacc agcgcgtagc cactgtacgc tcacaaaacg      1380
     caccgatcac aaaaaaaacc ccccaaaaac aacccagaag ttttcttctc taccgcagcc      1440
     agatcctcac ttggtacagg attcgttacc aaaaacgcgt catatgcaag cgctctaaga      1500
     tcaggtctag agcccccagc ctccaatgcg ccatgttcac aagccaaata tgtggacttc      1560
     aattcggtac aagacaaaaa gccaatggaa caacaacaaa acaatttcga agcaatgata      1620
     cttaccttgc agcagagcat ggcggagttt atggcgttta tgcggacaac catgcaagat      1680
     ctaatgcgca atcaaaacat gttgatacaa ttgcttgtat cacaacaatc aaaataatca      1740
     tcttcatggc ctcgctaaga atctctacgt ggaacgccaa tggcgtttca cagcacaaac      1800
     ttgagctagc tcaattccta ctcgaaaagc acatcgacgt aatgctactt tcggaaacac      1860
     acctcacaaa caaatataac ttcaacataa gaggatatat tttctacgga accaatcacc      1920
     ctgatggtaa ggcccacggc gggaccggga ttttgataag aagccgtctc aagcaccact      1980
     gtcatattga gactgccaaa aactatctac aagcaacatc attaaaaatt catttggata      2040
     atggtaacca gcttacttta gccgctgttt actgcccacc tcgttccact ttatctgaag      2100
     accaatttat ggaattcttc aactcacttg gagaacattt tatagcagct ggggactata      2160
     atgccaagca cacacactgg gggtctcgac tcgtgaatcc aaaaggaaaa cagctctaca      2220
     acgccattat aaaagcaaac aacaagctcg accacgtttc tcctggcaca cctacatact      2280
     ggcctactga ccccaaaaaa ctacctgatc taattgattt cgcagtcacc aaaaacattc      2340
     cccgtaattt gataagcgcc gagtgcctct cagacctatc atctgaccac tcgcccctcc      2400
     taataaatct gctccgacac ccagaaccag caaacctctc ttataagttg acttcagaaa      2460
     aaaccaactg gctcaaatac aaaaaataca taagctcaca cattgagctt aacccacctc      2520
     ttgaagctga agctgacatt gatagttttg ttaactcact ggagtcaatc atcgttgctg      2580
     cagctcgctg ctcaacgccg caaacagtaa gcaaaattac aaatcacaaa aagaccaacc      2640
     tgcaaatcga acaacttgtt ctcgaaaaac ggcgcctacg gcgagaatgg cagtcctcca      2700
     gatcaccgtc ggcaaaacaa aagttaaaag acgccacacg caaacttaca aaagctttaa      2760
     agcaagaaga agagcttgcc caacgtactt atattgaaaa attatcaaca tccagtacaa      2820
     aaaactcact gtggaaagct cacccaactc ttggctcacc cacagtacca gtggtcccta      2880
     ttagaaacca cacaggtggt tgggcccgta gcgacaaaaa tagagccagc acatttgcca      2940
     ctcatctaca aaaagtcttc caaccgaatt ctgcaacaaa cacgttcgaa attccgcccg      3000
     caacagacga ctcccagcwt catcatgcac cagttgtgtt tcgctcaaac gaaatctcaa      3060
     aaatcatcaa agaacatctg aacccaaaaa aatctgcagg gtgcgaccta attaccccta      3120
     agatgattat tgagctgcct tactgtgccg tatgcagcat tacccagctc ttcaacgcca      3180
     tcaacaaact tggctacttt ccaggaagat ggaaaawgtc aacaataata atgataccaa      3240
     agccgggaaa agatcacact gttccatcgt cgtacagacc cataagcctt ctatcctgct      3300
     tatcgaaact tttcgaaaaa tgcctactgt ctctgactat tactccattc ctgaacacgc      3360
     acaacacaat accagcacac caatttggct ttcgtgaaaa acacggaact attgagcaag      3420
     ttaaccgcat aacatcagaa atacgaaacg catttgaaaa acgggaatac tgctctgcga      3480
     tatttctaga tgtttcgcag gcattcgaca gagtttggct ggacggtctg atgtacaaaa      3540
     tcaaaacaac gcttccaaac aacactcata aacttctaga atcgtacctc tacaacagga      3600
     agtttgtagt gaggtgcaac actgcgatat ccgacgaaca cagtattgaa gccggcgtcc      3660
     cacaaggcag cgtactaggc ccaacactat acgtcctatw cacagcagac atccctacaa      3720
     gcagcaacct gacagtttca acatttgcgg atgacacagc tattctcagc cgctccagat      3780
     gcccaatcaa agcatcatct cagctagcca tctacctggt cgacgtggaa aagtggttat      3840
     ccgactggcg tataaaggta aacgaacaaa aatgcaagca agtaaccttc acccttaaca      3900
     ggcaagattg tccaccgctc acgctgaaca acgtcgcact tccaacagca aacgaagtga      3960
     cgtatctggg agtacacctc gacagaagac taacttggcg ccgacacatc gaagccaaga      4020
     gaactcactt aaaactgaag gccaacagcc ttcattggct tatcaactcc cgctcaccac      4080
     tcagtttgga cttcaaggtg ctgctctaca actcagtgct aaaaccaatc tggacttacg      4140
     gctgccagct atggggaaat gccagcaaca gcaacatcga tatcgttcag agagcccaga      4200
     cgaagatatt gagaactatc accggggcac cgtggtatgt tcgaaacgcc agcattcaca      4260
     aagatctaaa cgtgccacct gtaaaagacg aaattgcgga aaaaaaggaa aagtacctta      4320
     acaagctatc aacgcatcct aaccagctcg cgaggagtct aacaaggcta agcagccgat      4380
     cacgcctacg tcgaaacgac ttgccaaccc agcagtaatt ttttttttag ggccgctttt      4440
     ataatacagt tcaagaaatg tactggtaat tagtatttac acttaagatt tgttaacttg      4500
     ttgttagttt tcggtactga aaagatacaa caaataaaag ctccaaactg gaaaaaaaaa      4560
     a                                                                      4561
//
ID   Jockey-6_Hmel repbase;    DNA;    INV; 1724 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1724
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1371
FT                 /product="Jockey-6_Hmel_1p"
FT                 /translation="KHKNHPLNPKPPLRLEGNKWARTKQEKVKAFALHLAK
FT                 VFVPNEAAPGSNEADIDNVLQQPFQLDIPLNATTPAEVLRTIRQLQSKKAP
FT                 GFDLIDKRVLSELPRKAIVYLTALFNCIIRVAYYPALWKVSQITMIHKSGK
FT                 PPHQVASYRPISLLPIISKVFEKILLRRLICAMIENSVIPDHQFGFRAEHG
FT                 TIEQIHRVCRHISDSLERKEYCSSAFLDVQQAFDRVWHKGLLYKIKSLLPH
FT                 SFYSILKSYLTDRIFQVKEDDCTSSFHEIKAGVPQGSVLGPVLYSIFTSDL
FT                 PQTHGVTYATYADDTAILASSKDXTDATVKLQESISKINDWFNKWRIKVSA
FT                 NKSVQVTFTLRRETCPPVTLGGKVLPQRDTVKYLGLHLDRRLTWRKHIETK
FT                 RKEINLKYKGLYWLLGRNAKLRLDNKLLIYKTIIKPVWTHGIQVWGATCNS
FT                 NIKKFKLPRTTF"
XX
SQ   Sequence 1724 BP; 597 A; 397 C; 323 G; 404 T; 3 other;
     aagcataaaa atcacccact aaaccctaag cccccactcc gcttggaagg aaacaaatgg        60
     gctagaacya agcaggaaaa agtyaaagcc ttcgcattgc acctcgctaa agtgtttgtt       120
     cccaacgaag ctgctcctgg ttcaaatgaa gccgatatag ataatgtcct acaacaaccc       180
     tttcaactgg acatccccct aaacgctacg acaccagccg aagtattaag aaccatcaga       240
     caactacaga gcaagaaagc tccagggttt gatcttatcg ataagagagt cctgtcagaa       300
     ctgccacgca aagcaatagt atatctgact gcattgttca attgtatcat tagagtcgcc       360
     tactatcctg ccctgtggaa ggtctcccaa ataaccatga tccacaagtc tggtaaacca       420
     ccacatcaag ttgcatccta cagaccaatc agcctattac ccatcatatc taaagtgttt       480
     gagaagatac tgctgagaag gcttatatgc gctatgatcg aaaacagtgt aatcccagac       540
     catcaatttg gtttcagagc tgaacatggt acaattgaac aaatacacag agtgtgcaga       600
     catatcagtg atagccttga gcgaaaggaa tactgctcgt cagcattcct tgacgtccaa       660
     caagcctttg accgcgtgtg gcacaagggc ttgctttata agatcaagtc actcttaccc       720
     catagcttct atagtatact gaaatcttac ctcacagata ggatatttca agtaaaagag       780
     gatgactgca catcaagctt ccatgagata aaagctggag tgccgcaagg atctgtactt       840
     gggccagtgt tatactcaat attcacatca gatctgccgc agacacacgg agtcacgtat       900
     gcaacttatg cagacgacac tgccatatta gcctctagta aagatyctac agatgctact       960
     gtgaaacttc aagaaagtat ctccaaaata aatgactggt ttaacaaatg gagaatcaaa      1020
     gtgagtgcta acaaatcggt gcaggttacg ttcacactgc gaagggaaac ttgtcctcca      1080
     gtaaccctgg gtggtaaggt actgcctcaa agggatacag tgaaatacct tggattacac      1140
     ttggaccgca gattaacatg gcgaaaacac attgaaacga aacgcaaaga aattaatcta      1200
     aagtacaaag gtttatactg gctacttggc agaaacgcaa aactaaggtt ggataacaag      1260
     ctactcattt acaaaaccat cataaaacca gtctggacac atggcattca ggtttgggga      1320
     gccacgtgca attccaacat aaaaaaattc aaactgccca gaactacatt ctgaagcaaa      1380
     ttagtaacgc accatggttc attcgaaaca atgaaattca tgaattccta gagatgccta      1440
     cagtgagaga ggaaattcag acatttgcag gcaaatacaa actaagactg gaccgccatc      1500
     ccaatcagct tgctgtccag ctaaccttac ctgccctact aaatcgtctt aaacgaccta      1560
     gaacattgaa gcttagcaac actgactgag tactaagtct atataaatat ggaagatgtt      1620
     cctgctgggg atcattttca cactactaat caactccaaa cacatctgct catagtcaga      1680
     aagactgatt gcatgatata tcaatcataa aaaaaaaaaa aaaa                       1724
//
ID   Jockey-6_LMi repbase;    DNA;    INV; 3440 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 19.11, Created)
DT   16-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3440
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3107-3107 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 3440 BP; 682 A; 1421 C; 496 G; 837 T; 4 other;
     cccctctcct acgccccctc cccctcctcc acttggcaag cccatctaca ccttcctcta        60
     ccataacgtc cgatccctcc cagccaataa gaacctcttc atgcataccc tctcccaaca       120
     ccgcgtggac gccttcctmt taaatgaaac cttcctccaa ccccgccgtc ccatcagcac       180
     caatccttac cttctccatt gcactgatgg ccccccctcc cttggccaga ggcggagtgg       240
     cgatcggcca ccccgtccgg ctccaccccc tcctcaatga tccmaccgaa catctgatcc       300
     ttagtctctt cctccctccc ctcaccgtca ccctcgccac catctacatc cgcagcacct       360
     ctcctctccc atatgacttc ctatcccaca tcgaccgcaa ctacacgacc tatgtgattg       420
     ccgctgacct aaacctttct tccgtccacc tgccaaaatc cagcagtggc atcagttcgt       480
     caccacctcg ctctgggaca tcctacctct accccgccca acccgcccca aaagcaatac       540
     caccccgacg tcgtcttggc atctcccaac ctcttgggcg catcacgcag acgtcctcga       600
     ccttataggc agtgaccatg cccctgtcct gctcaccctt gaccaccgcc cccgccctgc       660
     ctgagctccc cgtcctagac ctcctcccaa actcattcac gactactccc gtgccgactg       720
     gaatgcctac ggtcgatcca tagatacctc ggtcgaaagc cacccccttc ccctccacac       780
     acccgaagac atcgaccaca cctcaacctt tctccaccag gccgttgctg acgcggttga       840
     agcccacatc cctacaaaaa ccatataccc acacagtcct accctccctc cacaggccgt       900
     cctcctcctc agagaatccc aatgcctcta ccgatcatac ctacggaccc gggaccggga       960
     cacactcaca cgccaccggc aaatccaatg tcacattaga aacctcttgt ccacgaaaaa      1020
     atgccgggac tggcgacaga catgcacccg ccttaattcc actctcccca tcaactcctc      1080
     aaagtactgg aaagccttca atcgccttac tggccgtcac tcctccccct actacccgct      1140
     catccatgat aaccatccct ttcccgacaa cgccagtaag gcwgaacact ttgccactta      1200
     cctatccgaa gtcttctccc ttcctgataa tcctcacttt gactactcac tctttcctga      1260
     cgtccatgag cgaactgaca cctcctcccc cctgctcgcc cccagcttcc agtacttgga      1320
     gcacattcct ccctcagaat taaacacacc tattacagca caagacatta tagctacact      1380
     tcgcacaaaa cgcaacacgg ctcccggtca cgaccggctc acctacaggc acctctgggc      1440
     ctgtcccctc tccttccaca ccgcccttgc caccctctac aatactatcc tatacaccgg      1500
     tttctatcct cgcctgtgga aaatctccca cattctcatg ttccccaaac ccaacaaacc      1560
     ccctcccaaa cctcttccta cctcccatca gctcacctcc gtgttcagca aggtcctgga      1620
     atccatcctc tcccgccgta tccatcaaca cctccgccaa caccagctcc ttcctttatc      1680
     ccaatgtggc ttccgaccat ccttctctgc cgacgaccaa ctccttcgcc tcatccacct      1740
     cctatccatc cagctaaatt cccgtcgctc cgcatttttg tatccctaga cattgaaaaa      1800
     gcctatgacc gtgtctggca ttccggcctc cttttcaagc tccaactcta tgcccttcct      1860
     attaactatg tccgcctcat tgcatccttc ctcacccacc gcccatccta cgtcactgtc      1920
     tgcaattcca actcccgctt gttttacccc tctgccgggg tgccccaagg atccgtcctc      1980
     tcccctctcc tgtaccttat atactctgcc gacatgcccc aacctcagtc tcccgtccat      2040
     ctcctccaat atgctgatga caccgccttc ctagccctcg ccccctccct tgcccgatcc      2100
     caatttttgc tccaatctca cctcaccgag ttcgctgcat ggtgcaaccg gtggctcctc      2160
     tccgtcaacc ctgacaaatc ccaggcaatc ataataggtc gtaccacccc ttcctttcgc      2220
     ctccccgact tctacctgac cctccaaggc cgtcccatcc gtcacacccc cactctaaag      2280
     taccttggcc tcacccttga tcgacatctt tcctggaccc cccacctcaa aaccatccgt      2340
     gaaaaagcca tgtcccgtct aaacctcctc aaactcctca ctggccggac gtggggatta      2400
     agcccctcca ccatcctcca cacctataaa tccatcatgc gccccatcct ctgctccttc      2460
     caccctgcct gggtttccgc tcctcccacc ttttatcaga ccctccaaat cctggaacgc      2520
     cacgccctcc gcctcgccta ccgtatccga cttccctccc ccacgcggat cctatacgaa      2580
     ctcatcccct ttcctcacct ccttcaacac cttgaacacc tccgaatcct gtacgtcacc      2640
     cgcaaaatag attcccgcaa ccccctcgtt taccccatcc taaccaaccc tgggcctctg      2700
     ccacgcctac accactgcat tcctccctct ctccacctgc acacgctaca tgtcctctcc      2760
     caaggcaact tccacgccct tcccctaccg gatgacgccc ttcgtcccga aatttacccc      2820
     tcctatcaac cctgatccta tccccgtagc atcagcgccc cctctcccca tcccctcctc      2880
     ctccctctcc ccgcttggct ttcccccttc cccaccctgg agtctcgacc gcccccgtcc      2940
     ttcctctcct ctctatctcc ccaacctccc ccgcgcttcc taaccttccc ctcccatccc      3000
     cctgcggggg cctcagtgac gaattttaga ccagtgtcgt ctagtgtcca gtgcatcmgt      3060
     gtctccgtgt gagctttaca gtgcgtcgaa caacaacctc tcctcttcac cagtgtcgtc      3120
     gtgttacttc ttcgtgtgtc cagtgactgt tctcaatgtg attttaccgc cgccgtggca      3180
     cagactgttt ttaactgtct atgtgtctgt ctccctcgcc ttgttcatgt gttttaagcc      3240
     tgcactattg tctccagtgt cctgttttta attcatcaat gttttcttcg tgccatgttt      3300
     ttcattcctc ttgtttttac cctcgtgaca tgttttttaa gtcttaattg taatttgcat      3360
     gtacgctcgg ctgaagagca gcgcctgatg ctgctgccag cctgccgact ctgtcggcgt      3420
     gaaaataaca ataaaggaaa                                                  3440
//
ID   Jockey-6_RPr repbase;    DNA;    INV; 4506 BP.
XX
AC   .
XX
DT   12-MAR-2013 (Rel. 20.10, Created)
DT   12-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4506
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3471-3471 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..1645
FT                 /product="Jockey-6_RPr_1p"
FT                 /note="pre_CCHC and 3 CCHC zinc-fingers."
FT                 /translation="MDLSETDIGGSISGSESTTSSINRSKRTSNSINLSPD
FT                 KKKKKKRNKISQFTSPPLTRQSNSALSKTPQQNQTAFMPNLPATTSSAPPQ
FT                 QVQFVSDFETPNKFNILPEVNDQPEHKPPPIYLYKISNYITLNNELRQLLG
FT                 AENFTCKARTDNILVSTNTIATYRATIRYLHEKNIEYHTYQLKKDKAFRVV
FT                 LRHLHHSIPPEEIKAEIQSKGFRVRNVSNVRRPIEKTPLPLFFIDLEPDSN
FT                 NKNIFNLTKILNTIVRVEEPYKTKEIAQCKRCQQYGHTRTYCHVSPRCVKC
FT                 AGPHFGENCNKNTETPPTCALCHKQHFASYRGCEVHKELQRIRRERIQLRG
FT                 QGAAVRTQPPQVSSRSDFPVFPSTLQQQQPPQQQPQQPYYNGTSTARPSYS
FT                 EIARSHPSYHSHQPSAHHSPQSSTHPAHHSPQSTAHPPHHPQSPAPAQPDI
FT                 TSVLNSFFQRFETLLTPLISLLNTLITHLLPGIKP"
FT   CDS           1645..4353
FT                 /product="Jockey-6_RPr_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="MISPTQHSLTILLWNANGLNSHRDELNTLLHNKRIDV
FT                 ALLTETHFTSRSHFYISDYQTYRTDHPDDTAHGGAAILVRNSLLHNALPSS
FT                 ATDYLQSSAISLFAHPHKINLAAVYCPPNKSVSELQFISYFNSLGTKFLAG
FT                 GDYNAKNQQWGCRTTNPRGRTLMNVLISKNYNIVSPNQPTYWPTSLSKLPD
FT                 ILDFFILSQVTHYFEVSTLTELSSDHSPVLITLDTCPVHRPSKPSLITGPV
FT                 DWEKFQFEIESNIDLRIPLKSKEDIDNAVEQFTETIQESMRQSTLHHTNQQ
FT                 RTRTSNIPLFIRTLIMDKRRARAKWQRTRYPSDRRLYNRLTHQLKTELKQL
FT                 KDERFQDYTLTLTTEDNSLWTATKKILSYKTTPTPLRRVDGSWAASDEDKA
FT                 SLFASHFSSVFTPHQDMINTSFHESLRSDLDLPLPLSLPPKHFTPSDILFI
FT                 IKHLSLKKAPGPDLITAKILRHLPKKAIVLLTTIYNSVLRTTYFPILWKSS
FT                 LIYPIPKPNKPLHLSSSYRPISLLPILGKILEKLLLKQILPILESSNIIPD
FT                 HQFGFRRQHSTVQQCHRVVDTISSSLEKKECCSGVFLDVKQAFDRVWHPGL
FT                 LWKLKGILPFTHFLILKSYLSDRHFQIQIGTSYSAKHRIEAGVPQGSILGP
FT                 ILYVIYTADIPIHPETVLLTYADDTAILSPHIDPVTSHRNLQTHLFSLEEW
FT                 FKKWKIKLNETKSQNITFTLRRITLPPIFYDSIPIPPANVVRYLGLYLDKR
FT                 LTWNPHTRLKRTEVNRRYRLLKRLLDQRSKLSLNNKRLIYNSILKPAWTYG
FT                 IELWGSTKRSNLQRIQSLQSKILRTIVNAPFYVSNLTIHTDLEIPFVGQVA
FT                 RTRYKSFHQNLHSHSNPLVRHLSSHHHPDHPPRRLKRQWPRDFLSSEESS"
XX
SQ   Sequence 4506 BP; 1412 A; 1215 C; 651 G; 1226 T; 2 other;
     taatgaccaa ctttgtcatt aaataataat ttgaaagtgg ttttttaatt attaaataaa        60
     ttcacccttt cccatcctga tataaagtaa gaagttacaa agcaaattcc aactgtaagt       120
     gaggtaacct aattatttac ttattattgc taagaacaaa cagaaaagaa aaactacaaa       180
     tattaacctc ctcggcggct tagacatgga tctaagcgag accgacatcg gaggatccat       240
     ctctggtagc gaatctacta cttcttctat taaccgatct aaacgaactt caaacagtat       300
     taacctttct ccagataaaa agaaaaagaa aaaaagaaat aaaatctctc agttcacttc       360
     acctccttta acacgtcaat ctaactctgc actttccaag actccgcaac aaaaccaaac       420
     agcttttatg cctaacttac cggcaacaac ttcatcagca cctccacaac aagtacagtt       480
     tgtgtcagat tttgagacac ctaataaatt taatattctg ccagaagtca atgaccaacc       540
     cgagcacaaa ccgcctccta tctatttgta caaaatctcc aactatataa cgctcaacaa       600
     cgaactcaga caactccttg gagcagagaa tttcacatgt aaagcacgca ctgacaatat       660
     tctggtttca accaacacca ttgcaacata cagggcaaca attcggtacc tgcacgaaaa       720
     aaatattgaa taccatacat accaactaaa aaaagacaaa gcctttagag tcgttctgcg       780
     ccatttacac cactccatac cgcctgaaga gatcaaagcg gaaatacaat ctaaagggtt       840
     cagggtacga aatgttagca acgtcaggcg cccgatcgag aagactcctc ttcctctatt       900
     cttcatagat ctagaaccag acagtaacaa caaaaatatt tttaacctca ccaagatact       960
     gaacacaatt gtccgggtgg aggagcccta taaaacaaag gaaattgccc agtgcaagag      1020
     gtgccaacaa tacgggcaca cccgcacata ctgtcatgtc tctccgagat gcgtcaaatg      1080
     cgcagggccc cacttcggag aaaactgcaa caaaaacaca gaaactccgc ctacctgtgc      1140
     actctgccac aaacagcact ttgccagcta ccgtggatgc gaagttcaca aggaattgca      1200
     aaggatccgt cgagaacgaa tccaacttcg aggccaagga gcagctgtta ggacgcaacc      1260
     tcctcaagtc tcttcccgaa gcgactttcc agtttttcca tcaactctgc aacagcaaca      1320
     acctccgcag cagcaaccac aacaacctta ttacaatgga acttccactg ctaggccctc      1380
     ttattcagaa atcgcgaggt cacatccttc atatcattct catcaaccat ctgcacatca      1440
     ttcacctcaa tcatctacac atcctgcaca tcattctcct caatcaactg cacatcctcc      1500
     acatcatcct caatcacctg cacctgcaca accggatata acctcagtac tgaactcctt      1560
     tttccaaaga tttgaaaccc tcctcactcc tctcatcagt ctcttaaaca ctcttattac      1620
     tcacctcctt ccaggcataa aaccatgatc tctccaacac aacattcttt aaccatcctt      1680
     ctctggaatg cgaacgggtt gaactcccac agagacgaac ttaatacttt gctacataac      1740
     aaacgtattg acgtggccct actgacggaa acacacttta caagtagatc acacttttac      1800
     atttcagact atcagacata caggactgat catcctgatg atactgctca cggtggcgcg      1860
     gcaatattgg tcagaaactc cttacttcat aatgctctcc cttcatctgc tacagactat      1920
     cttcaatcct ctgcaatctc cttattcgct catccacata aaattaatct tgctgcagtg      1980
     tactgtccac cgaataaatc tgtttctgag ctacaattta tctcctactt taattctctc      2040
     ggaactaaat ttcttgcagg aggagactat aacgcgaaaa accaacaatg gggatgtcgc      2100
     acgactaacc ctcgcgggcg tacactcatg aatgtcctta tttcaaaaaa ctacaacatt      2160
     gtttcaccta accagcctac ctactggccc acatccttat ccaaactccc tgacattctt      2220
     gacttcttca tactttctca ggtaactcac tactttgaag tttcgacctt gacagaactt      2280
     tcttcagacc atagccctgt tttaattact ctcgacactt gtcccgtcca cagaccttcc      2340
     aaaccatctc tcatcactgg ccccgtagat tgggaaaaat tccaatttga aatagaaagt      2400
     aacatagact tacgtattcc tcttaaatca aaagaagaca ttgacaatgc ggtagaacaa      2460
     tttactgaaa ccatacaaga atctatgaga caatcaactt tacaccacac taaccaacaa      2520
     cgaacccgca catccaatat ccctttgttt atacggactc ttattatgga taaacgacgt      2580
     gcaagagcta agtggcaacg aactcgctac ccatctgaca gacgactcta caataggcta      2640
     acgcaccaac ttaaaactga acttaaacag ttgaaggatg aacgtttcca agactacaca      2700
     ctaacactaa ctacggaaga caactcgctt tggactgcta ctaagaaaat cttgtcttac      2760
     aaaaccactc caacacctct ccgtcgtgtt gacggctctt gggctgcatc tgacgaagac      2820
     aaagcttcct tgtttgcctc tcatttttcc tcagttttta cccctcatca agatatgatc      2880
     aatacttcat tccacgaatc cttacgatca gatcttgacc tacctcttcc tctctcctta      2940
     ccaccgaaac atttcactcc ttctgacatt ctatttatca ttaaacatct ctctcttaag      3000
     aaagctccgg gccctgatct cataactgct aaaattctcc gacatcttcc caaaaaagca      3060
     atagtcctct taactactat ctacaattca gtactaagaa caacttactt cccgattcta      3120
     tggaaatcct ccttaattta ccctattcct aaacctaaca agccacttca tctttcttct      3180
     tcttaccgac caattagtct actgccaatt cttggcaaaa ttcttgagaa acttctttta      3240
     aaacaaattc ttcccatact cgaatcctct aatattattc cagaccatca gtttggattt      3300
     aggcgacaac actctactgt acaacagtgc catcgagtgg tagacacgat ttcatcctcc      3360
     cttgagaaga aagagtgttg ctcgggtgtc tttctcgatg tgaagcaagc cttcgatcgg      3420
     gtttggcacc cgggcttgct ctggaaactc aagggcattc ttccgttcac tcacttcctc      3480
     atcttgaagt cctatttgtc tgatcgtcat tttcaaattc aaatcgggac atcgtattca      3540
     gctaaacatc gtattgaagc gggtgttcct caaggaagca tcttaggacc tatcctatat      3600
     gttatataca cagcagacat accaatccat cctgaaactg tccttctaac ttatgcagat      3660
     gataccgcta tactttctcc tcacattgat ccggtaactt cacacagaaa ccttcaaacw      3720
     catctctttt ctcttgagga atggtttaaa aaatggaaaa tcaagttaaa tgaaaccaaa      3780
     tctcaaaata ttacttttac tctccgccgc atcactcttc ctccgatctt ctatgactca      3840
     attccaattc ctcctgccaa tgttgtccgt tatcttgggc tttatttaga caaaagactg      3900
     acttggaacc cgcacacacg acttaaacga actgaagtta acaggcgtta tcgactactt      3960
     aaaagactac tagaccaacg ttcaaaactt tcacttaata acaaacgact gatttacaat      4020
     tccatactaa aacccgcctg gacgtacggt attgaactgt ggggttcaac gaaacgctcc      4080
     aatcttcaac gaattcaatc tcttcagtct aaaattctcc gcactatcgt taacgctcca      4140
     ttttacgttt caaatctaac catccacaca gacctggaaa ttccgtttgt wggtcaggtt      4200
     gcacgaactc gctataaaag ttttcatcag aacttgcact ctcattccaa tcctcttgtc      4260
     cgccacttat catctcatca ccatccagat catcctccca gacgactaaa acgccagtgg      4320
     cctcgcgatt ttctctcttc tgaggagagt agctaatcct agagatgact tagggagtgt      4380
     tatcactggg taacttctcc cctcaattag tggagtttgt agtggtgtca gctattgtca      4440
     ttgttactaa tagtgcatct agcgctggtg taacttaaca aataaataaa aaaaaaaaaa      4500
     aaaaaa                                                                 4506
//
ID   Jockey-7_BTa repbase;    DNA;    INV; 5610 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5610
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 709-709 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2399..5143
FT                 /product="Jockey-7_BTa_2p"
FT                 /translation="MNHSNSKENILNFVAWNANGLTPAKLLAFSETMAQLR
FT                 TDVALFSETHFARESRGYVKGFRFYNARHPSNKARGGASIAIRESLKHSVI
FT                 KIIEEERFQSVVIQIESSLGPFEIGAIYAPPGQRCDVAHYTELLEGMGSRF
FT                 IIGGDWNCKSVRWGSRLTNPKGRHLETAVNLIGGDFITPGKPTFYPADGTK
FT                 EPDVIDFFVFNNLSLSNKTVCDVLNSKKGVRPKDHVPVVLSIYATPVLTKR
FT                 PPCLFSAQTDWEKFRTTLTNRIDNSTTINDQKSLDFEAERLTSLIQEAAKI
FT                 STPVARNNGNFYPKCTLPAEILRLIDRKKGAARRKKSSLFPADKVRYNQLN
FT                 KAVTKRINEFRNAQFEKFIRDLSAKEINDYSLWKATKSLKRPFHTSFPILQ
FT                 SNGEWANNSQEKANTIAAHLESVFQPNPCTDPEREREILNEVNDIQFLPDE
FT                 KIKKINFEDIFNEIKYKTKIKKCPGFDLISGVVLKQLPEAAIRKLTTIFNA
FT                 VLTLKYVPLQWKKAEVIVLLKSGKPPSAPSSYRPISLLPLISKLFEKLYIK
FT                 RLFPIVKKKKLLPNEQFGFRPQHSTIEQLHRISAFIEKSLEEKKFCNVVFL
FT                 DVAQAFDRVWHQKLAFKLSKMLPGNHVKLLMSYLDSRFFRVRFEDAYSVFK
FT                 SIRAGVPQGSVLSPLLYSLFTADIPKTKNCKLGIFADDTAVASSAPTYNET
FT                 VTYLQSGLDNIQEWTNNDRTVLNASKSVNVVFTLRPYVHTPLILENTAIPH
FT                 AFEARYLGLIMDSRLNWKRHILTKKKQIELKHRQMLWLLGKRSKLSLNNKI
FT                 LLYKSMIRPIWTYGSQMWACAASSNLKIIERTQNKILRQMAGARWYERNAD
FT                 IRSELGIEEMDSYISRLYNNYEERLGVHPNPEAITLLDWMEAPRRLKRRKP
FT                 HELATARFRQC"
FT   CDS           join(199..1167,1137..2399)
FT                 /product="Jockey-7_BTa_1p"
FT                 /translation="MADRPVKCKHGVQCSYVNNVFLGCEKCLKRGLLIGLT
FT                 YVPRTKLDTLPNSQMENQNPFGRSSLLPRSPPPSQSARVDDNLSLIATESS
FT                 LTAVASVEDKETIINEILNTSIDPVLQAPTIDKSIKSFMTKAQNMVKTLSS
FT                 DKNELVNRINSLEAENAKKIQKLQEQINAISSANASSRSRDAHLQSAKVLV
FT                 KNNSRKPSGQSKLTQFATGKPVTPKPGTSTTPVSNQFAFLEDDVESNHNAD
FT                 DSESSDTWVDYNSDTEFNSKRKAIQSQRRKRKRASTSASSGHTDNQQTKPG
FT                 ESAPVKVNIPNHSVSNASSVKKILPPLPLKLENFTPPPIKVIGVDNYVNLV
FT                 EIITKKSVKKEDVRTKIINNEVWQLNPKDDATAKIILESLRETQETNNKVQ
FT                 NYTHCNKNLRDIKVIVRGLYPSIEEQDILDDLKNKGFKPKKATCLMKRVPL
FT                 SDAELKALKKSVSPVVLAPQTADPKSVPEQNSVSAMETNSAVNETNSDETY
FT                 PPETIVDKDNEPLFIADSAYVSKTKLIKIPVHQVDFDYTDDIEKIYKIVGI
FT                 CSMVVKVEPIKVSTTKIIQCRKCQNFGHSQAYCGKQARCVKCAAKHLSSEC
FT                 PWAKRIINPKCANCGVTGHPASYRGCPFAKEMQKDRLKALKGKNLQKSSIR
FT                 GNFPALPEKPNQKNVNTQNNKNSKLSNHNKIKPNVTFAEATSPSSSGDNHQ
FT                 TELISQLLLTIDSLRKQLEEMSKRQEKYEQALLGRVVGSTSFRA"
XX
SQ   Sequence 5610 BP; 1854 A; 1226 C; 1043 G; 1487 T; 0 other;
     cactcgttgt tgtgctctga agcgagacgg tcgcgcttca gctcacgccg gatcagtatt        60
     tttcaacaaa ttttcggaaa gaaatccacc agcatgtgat tctgctggaa tcgagaaaag       120
     tgctcgcgtc gcggtgttct ggcggccggg tcccgagtga tattagtgcc agtgtcatca       180
     taaacaataa acaatcgcat ggcagaccgg cctgtaaagt gtaaacacgg tgttcagtgt       240
     agctacgtaa acaacgtttt tctcgggtgc gaaaaatgcc taaagcgggg attgctcatc       300
     ggcctaacct acgtacctcg aactaaacta gacacgttgc caaatagcca aatggaaaat       360
     caaaacccgt tcgggagaag ttctcttctc ccgaggtctc cgcccccctc tcagtcggca       420
     agggtggatg ataacctctc tcttattgct acggagtcaa gcttgacagc ggtggcgtcg       480
     gtagaagata aagaaacaat tattaatgaa attttaaaca ccagcattga tcctgttctt       540
     caggccccta ccattgataa atcaattaaa agttttatga ccaaggcgca aaacatggtc       600
     aaaacgctgt ccagtgacaa aaatgaactg gtgaatagaa tcaattccct tgaagcagaa       660
     aatgcgaaaa aaatacagaa attacaggaa caaattaatg cgattagctc tgcaaatgca       720
     agctctcgat ctagagatgc ccatctacaa tctgcgaaag tgttagttaa aaataactct       780
     cgtaagccct cagggcaatc taaattaaca cagttcgcca ctgggaaacc agttacacca       840
     aaaccaggta catctacaac acctgtttct aaccaatttg cctttctgga agacgacgtg       900
     gaatcgaatc acaatgctga tgactctgaa tcttccgaca cctgggtcga ctacaactcg       960
     gataccgaat ttaactccaa acggaaagcg atccaatctc aaagaaggaa gcgtaagaga      1020
     gcgagcactt cagcttcaag tggccatacc gataatcaac aaaccaaacc gggtgagagc      1080
     gctccagtta aagtaaatat acctaatcat agtgtatcaa atgcatctag tgttaagaaa      1140
     attttacccc ccctcccatt aaagttatag gtgtagacaa ttatgtcaat cttgtagaaa      1200
     taatcacaaa aaaatcagtt aaaaaggaag atgtcagaac taaaattatt aataatgaag      1260
     tctggcaact aaatccgaaa gacgacgcta cggcgaaaat aatcttagaa tccctcagag      1320
     aaacacagga gactaataat aaagtgcaaa actacactca ctgcaataaa aatctgcgtg      1380
     atattaaagt tattgtaaga gggctttacc cttcaatcga agagcaagat attcttgacg      1440
     acttaaaaaa taaaggtttt aaacctaaaa aagcgacttg cctcatgaaa cgcgtcccac      1500
     tgtcggacgc ggaacttaaa gctttgaaaa aatcagtatc acctgtggtt ctagctccac      1560
     agacggctga tcctaagtca gtgcctgagc aaaactcagt ctcggctatg gaaacaaatt      1620
     ccgcagtcaa tgagacaaac tcagacgaaa cctacccccc agaaacaatt gtagataaag      1680
     ataacgagcc tctttttatt gctgactctg cttatgtaag taaaactaaa ctgataaaaa      1740
     taccggtcca tcaggtcgac ttcgactata ctgatgatat agaaaaaatc tataagattg      1800
     ttggtatttg ttctatggtt gtaaaagtag aacccattaa agttagtact actaagataa      1860
     tacagtgtcg aaaatgtcaa aatttcggac attcccaagc atattgtggt aagcaagcac      1920
     gttgtgtaaa gtgtgcagct aaacatctat cctcagaatg cccttgggcg aagcgcatta      1980
     tcaaccctaa gtgtgcaaat tgtggggtaa caggtcaccc ggctagctat cgaggctgcc      2040
     cctttgccaa agagatgcaa aaagataggc tcaaagctct taaaggtaaa aatctacaaa      2100
     aatccagtat taggggaaat ttccctgccc ttcccgaaaa acctaatcag aaaaacgtaa      2160
     atactcaaaa taataaaaat tccaaattat ctaatcataa taaaatcaaa ccgaatgtca      2220
     catttgcaga agcaacgagc ccctcgtcat ccggtgataa ccatcaaacg gaattgataa      2280
     gtcaactatt actcacaatt gattctctta gaaaacagct cgaagaaatg agtaaacgcc      2340
     aagaaaaata cgagcaagct ttacttggcc gtgttgtcgg ctctacttcc ttccgagcat      2400
     gaatcactct aattctaaag aaaatatttt aaattttgtt gcatggaacg ccaacggtct      2460
     aaccccggct aaattactcg catttagtga aaccatggct caattaagaa cggacgttgc      2520
     ccttttttct gagacccact ttgccagaga atcaaggggt tatgtgaagg gatttcggtt      2580
     ttataatgca agacacccat ctaacaaagc gcgggggggt gcctcgatag caatcaggga      2640
     gtcattaaaa cactccgtta tcaaaattat agaagaagag agattccagt ctgtagtcat      2700
     tcagattgag tcatctctag gacctttcga aattggtgcc atctacgcac cgcccggaca      2760
     gcgttgcgac gttgcacatt ataccgaatt gctcgaaggg atgggttccc gctttattat      2820
     aggcggtgac tggaattgta aatctgtcag gtggggatct agactcacga accctaaagg      2880
     tagacacttg gaaacagcag taaatttaat cggaggtgat ttcatcaccc cgggcaaacc      2940
     cacattttac ccagcggatg gaaccaaaga gcccgatgtt atcgactttt ttgtctttaa      3000
     taatctctca ctaagtaaca aaaccgtctg cgatgttctg aatagcaaaa aaggcgtacg      3060
     ccctaaagat catgtccctg tcgttttgtc tatctatgct acacctgtat taactaaaag      3120
     acccccgtgt ctcttttccg cccaaacgga ctgggaaaaa tttcgtacaa ccttaacaaa      3180
     ccggatcgat aattctacca ccattaacga tcaaaaatcc ctcgattttg aagctgaacg      3240
     tctaacttcc cttatacaag aggctgcaaa aattagcacg ccagttgcac gtaataatgg      3300
     gaacttttac ccaaaatgta ctcttccggc agaaattctt cgtttaattg ataggaaaaa      3360
     gggggctgca cgacgcaaaa aatcttcctt gtttcccgca gacaaagttc gttacaacca      3420
     attgaacaaa gcagtaacaa aacgcatcaa cgaattcagg aacgctcagt tcgaaaaatt      3480
     tattcgggat ttaagtgcaa aagaaattaa tgattactca ctgtggaaag caactaaatc      3540
     tctgaaacgc cctttccaca caagcttccc tattttacaa tcaaacgggg aatgggctaa      3600
     caacagccaa gaaaaagcaa acacaattgc tgcccatttg gaatcagtgt ttcaaccaaa      3660
     cccctgtact gacccagaac gagagagaga aattttgaac gaggtaaatg atattcaatt      3720
     cctccccgat gaaaaaatta aaaaaattaa ctttgaggac atttttaatg aaatcaaata      3780
     taaaacaaaa atcaaaaagt gtcctggctt tgacctcata tcgggtgttg tgctgaaaca      3840
     acttccagaa gcagcaatta gaaaattaac aactattttt aacgctgtct taaccttaaa      3900
     atatgtacca ctacaatgga aaaaggctga agtaatagtc ctactaaaat cgggtaaacc      3960
     tccttcagca cccagctcct atagacctat ttctttgttg ccccttataa gtaaactgtt      4020
     cgaaaagctc tatattaaaa gactttttcc tattgttaag aagaaaaaac ttctccctaa      4080
     cgagcaattt ggattccgac cacaacacag cacaatagag caactccatc gcatctctgc      4140
     ttttattgag aaatctttag aagagaagaa attttgtaat gtcgtgttct tggatgttgc      4200
     ccaggcattc gaccgagtgt ggcaccaaaa actggcattc aaactatcca aaatgctacc      4260
     tggaaatcat gtcaaactgc taatgtctta cttagatagt cgttttttca gagtccgatt      4320
     tgaagacgct tactctgtat ttaaatcaat tagagcaggg gtaccccagg gatctgtact      4380
     ctcccctctc ctttacagtc ttttcacagc agacatccca aaaacaaaaa attgtaaatt      4440
     gggtatcttt gctgacgata ctgccgtagc atcgtcagcc cccacataca acgagactgt      4500
     tacatactta cagtcgggcc tggataacat ccaagaatgg acgaataatg atcgaaccgt      4560
     gcttaatgct tcaaagtcgg tgaacgtggt gtttaccctc cgcccttacg ttcacacacc      4620
     gttgattctc gaaaacactg ccatccctca cgcgtttgag gcccgttatc ttggccttat      4680
     catggatagc agacttaact ggaaaagaca tatcctgact aaaaaaaagc aaatcgaatt      4740
     aaagcatcgt caaatgctat ggctccttgg gaagcgttca aaattatcct taaataataa      4800
     aatattactc tataaatcca tgataaggcc aatctggacc tacggcagtc agatgtgggc      4860
     ctgtgctgca tcttccaatt taaagatcat tgagcgcaca caaaacaaaa ttttaagaca      4920
     aatggcgggg gccaggtggt acgagcgtaa cgcagatatt cgtagcgagc tcgggataga      4980
     agaaatggat tcatatatat ccaggttgta taacaactat gaagagcgtt tgggagtaca      5040
     ccctaacccg gaagcgataa cgctcctgga ctggatggag gctccacgcc gtcttaaaag      5100
     aagaaaaccc cacgagttgg caacggctcg ctttcgccag tgttaggctc gtgccactgg      5160
     cccccgattt agtctttgtc gactgacggg gtcacgcact cttaaataaa aaactctcat      5220
     gttttacatg agaattcaca tagctattca ttgttagttt ttcccacttt ttctcccttt      5280
     tcttttaaca ttcaagttaa ttatttttaa ttttcatttc ttacaatctc ttcgtaactt      5340
     tcgtaaaatt ctttctttca atagttagct ctcaccttga tgtccctatt ttcttaactt      5400
     tagtttcagt tatctaatct ttatctcttt tgtaatttta tcccctctca atatttgaat      5460
     tctgttatta actctaaaaa gtggtgtgta ttatacttta ttaggtataa gttaatgtaa      5520
     aattttataa agacctatct ggtctgaaaa tttcaagtgt aattgctatg tacatttaca      5580
     tgaataaaaa aaaaaaaaaa aaaaaaaaaa                                       5610
//
ID   Jockey-7_CQ repbase;    DNA;    INV; 4304 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4304
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 118-118 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1377
FT                 /product="Jockey-7_CQ_1p"
FT                 /translation="FVILGKPKVTLNQGTQDASTRTTVGSIQKNSTRGGVN
FT                 LTSQKLSLYDEGLLKDIPLNPISTRLPAVPGGGGGVPIDDTMNTSNNRIPP
FT                 FIPLRNDFDILDDDDNGDGQNGVEQAKKAPKVRLPPIHVMDLSVGDVFKLL
FT                 NDNGLPRSEAFLLKHTRTSVQFLTKSKEVFDKAVSVLKSKNVKFFTHDSSG
FT                 KAPSKFVLSGLPLAEVEDVKEELARVNILPRDIKVLSSSKSAVDQHALYLL
FT                 YFDRGSTKLQDLRKTKALFNVVVSWRYYSRRPNEVAQCHRCQRFGHGSTHC
FT                 YLSPKCVKCGGQHLTDVCSLPRKMELNDQNNSKSKLKCANCGGSHTANFQG
FT                 CPSRKKFLDELEKRKKKPVRQPAPNHTSREAFPSLGQQRSGPRTSNFPAGH
FT                 RTYAQVSATSLPPAPDVDAEGEGLFSISEFLALARDMFARLSGCRSKLQQF
FT                 NALAELMVKYIYHG"
FT   CDS           1373..4039
FT                 /product="Jockey-7_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANLNQLKIVNWNGRSVLPKKLEFFDFLSRHHIDIAT
FT                 VSETWLKPKQSFFHPDYRCVRADRENQDDERGGGVLIAIRKDIHFKILDIN
FT                 TSAIETVGIEILNAAQPVHIIAVYFPGVHRGSTWTTFKRDINTLVRRTVPF
FT                 FVAGDLNARHRQWNCLRANKAGNILASRASSSDFFIHAPLTHSYHPKGGRR
FT                 PSTLDLVLSNNFVDMSSLTVVNDLSSDHLPVRFDVNISVPFNQTXPATRCY
FT                 SRANWQVFQRVLNEKIDLTSPLVTNLESPEAIDRCIAMFTSFIIEAESTAV
FT                 PTAPVRSYKEAEFAESTRRLVQLRNTRRRQWFRTRDPLLADIVEALNVRIR
FT                 NECTIARNQHFSNSIRHLENGAKDMWRISKALRNSVKYTPPLKNGDSLVAA
FT                 PSEKANLLADSFANAHRNTLPSEPSVIAQVEESVAHITATDSTTAAAPVVR
FT                 PKELQRIIQSLKPKKAPGLDKVGNIVLKRLPRKGIVVLTKIVNACLALSYF
FT                 PSSWKHAIVRGIPKAGKDVTLPSNYRPISLLPTMSKILERVILSRIESHLE
FT                 SRTVIPRQQFGFKRGHSTNHQLVRLTQSIQQSFARGQSVGMILLDVEKAYD
FT                 SVWQDAILHKMKLAGFPQYILKLLHSFLKNRSFQVIVDGELSRPQLIPFGV
FT                 PQGAVLSPILYNIFTSDVVMVNGVEYYMFADDTGFASADKHPEIIIEKLQS
FT                 AQNKLEDYQRRWKIKINPAKTQAIFFTRRRSERFLPQSQVVSMGHAVPWSE
FT                 QVKYLGLEFDPKLKFDKHVAASLEKCSKLTRMLYPLVSRRSRLSSRNKILL
FT                 YKLIFRPTLSYGFPAWHGCAQSRRKKLQVRQNKLLKMMLDLPFNFPTAELE
FT                 DASGVEELDSWTSRLLRNFWTRCSMSENDLIVNLVP"
XX
SQ   Sequence 4304 BP; 1131 A; 1191 C; 1028 G; 952 T; 2 other;
     ttcgtcatcc tggggaaacc taaagttacg ctaaaccagg gcacacagga tgcgtccacc        60
     cggaccacgg taggatccat ccagaagaat tccacccgag gaggagtgaa cttaacctca       120
     caaaaactga gcctgtacga cgaaggtctg ctcaaagaca taccgctgaa cccgatctca       180
     acaagactgc ccgccgtacc gggcggtggc ggaggagttc cgatcgacga cacgatgaac       240
     accagcaaca acagaattcc accattcatt cccctgcgga atgatttcga tatactcgac       300
     gacgacgaca acggtgacgg gcaaaacgga gtggaacaag caaagaaagc tcccaaggtc       360
     agactccccc caatccacgt gatggacctc tcggtgggcg atgtcttcaa gctgctgaac       420
     gataacggtt tgccaaggag cgaggcattt ctactcaagc acacccggac gtctgtgcag       480
     tttttgacta agtcgaaaga ggtgttcgac aaagcagtgt cggtactgaa gagtaagaac       540
     gtgaagtttt tcacccacga ctcttctgga aaagctccgt ccaaatttgt gctctctggg       600
     ctaccactcg cagaggttga ggatgtcaag gaagaactgg ccagagtcaa catactccca       660
     cgagacataa aagtgctgtc atcgtctaag tctgctgttg accaacatgc actctacttg       720
     ctgtattttg atcgcgggtc gacgaagctg caggatctgc gaaaaacgaa ggcgttgttc       780
     aacgtggttg tttcgtggag gtactactcc cggaggccga atgaggtggc ccagtgccac       840
     cgatgtcagc gcttcggcca tgggtcwacc cactgctacc tctcgcctaa atgtgtcaaa       900
     tgcggcggcc agcatctcac cgacgtgtgt agcctgccaa ggaagatgga gttgaacgac       960
     cagaacaact cgaagtccaa gctgaagtgt gccaactgtg gaggcagtca tactgccaac      1020
     ttccaaggct gcccttccag gaaaaagttt ctggatgagt tggagaagag gaagaagaaa      1080
     ccggttcgtc aacctgcacc aaatcatacg tctcgggaag cttttccgag cctgggtcaa      1140
     caaaggtccg gtccaagaac cagcaatttc ccagcaggcc atcggaccta tgcccaagtg      1200
     tctgccacaa gcttgcctcc tgcaccagat gtcgacgctg aaggtgaagg tcttttctcc      1260
     atctccgagt tcctggctct cgcccgggac atgttcgccc gcttgagtgg atgtcgctca      1320
     aagctgcagc agttcaacgc tcttgcagag ctgatggtca agtatattta ccatggctaa      1380
     tctcaaccaa cttaaaattg ttaactggaa cggcaggtcg gtcctgccga agaaactcga      1440
     gttctttgac tttctctccc gacaccacat cgacatagca accgtgtcgg agacgtggct      1500
     taaaccaaaa caatctttct tccatcctga ctatcgatgc gtccgagctg accgagaaaa      1560
     ccaggacgac gagcgtggcg gtggtgtttt gattgccatc aggaaagaca tccacttcaa      1620
     gattcttgac atcaacactt cagctatcga gacagtcggg atcgagatac taaacgcagc      1680
     ccaaccggtc cacatcatcg cggtctactt tccgggagtt caccgtggct caacgtggac      1740
     gactttcaag cgggacatca acacactggt gaggagaacg gttccattct ttgtagcggg      1800
     ggacctgaac gctcgccatc gccagtggaa ttgtctcaga gcaaacaaag ccggaaacat      1860
     cctcgcctcc cgggcgagct catccgactt cttcatccac gcccctctga cccactccta      1920
     ccatcccaaa ggaggtcgtc ggccttccac gctggatctt gtcctgtcca acaacttcgt      1980
     ggacatgtct tcgctgaccg ttgtcaacga tttgtcgtcg gatcacctac cggtgcgctt      2040
     tgatgtaaac atcagtgtac ctttcaacca aacgcscccc gctacgcgtt gctattctcg      2100
     cgcaaactgg caggtgttcc aaagagtgct gaatgagaaa atcgacttga cttccccgct      2160
     ggtcacgaat ctggagagcc ctgaagcgat agacaggtgc attgcgatgt tcacctcgtt      2220
     tattatcgaa gctgaatcaa ctgctgttcc gaccgctcct gtgcgatcgt acaaggaggc      2280
     cgagtttgcc gagtccactc gacgattggt gcagctgagg aatacccgac gacggcaatg      2340
     gttccgcact cgtgatccgc ttctcgcgga catcgtcgag gcacttaacg tgcggatccg      2400
     caacgaatgt actatagcca ggaaccagca cttcagcaac agcatccggc acctggaaaa      2460
     cggcgcaaag gacatgtgga gaatcagcaa ggctcttcgc aacagtgtga aatacactcc      2520
     cccgttgaag aatggcgact cccttgttgc tgctccgtcg gaaaaggcaa acttgctggc      2580
     ggatagcttc gccaacgctc accgtaacac cttacccagc gaaccgtcag tcatagccca      2640
     agttgaagaa tcagtagctc acatcaccgc tacggacagc acgacggccg ctgcgcctgt      2700
     cgtccgcccg aaagaactac aacggataat ccagtcgctc aaaccaaaga aagcgcctgg      2760
     tctggacaag gtggggaaca tcgtattaaa gcgcctgcca cggaaaggga ttgtggtgct      2820
     tacaaaaatc gtcaacgctt gtcttgcgct ctcctatttc ccgagtagct ggaagcatgc      2880
     gattgtcaga ggaattccaa aggcgggcaa ggacgtaacg ctcccttcga actatcgccc      2940
     aatcagcctt ctgccaacga tgagtaaaat cctcgagcgt gttattctgt cccgtatcga      3000
     gagccacctt gaaagtcgta ctgtcattcc ccgacaacag ttcggcttca aacgagggca      3060
     ctcgacaaat caccaactcg tgcgtcttac gcagagcatc cagcagtcct tcgctcgtgg      3120
     ccaatcagtg ggcatgatac tcttggacgt tgagaaggcg tacgattccg tctggcagga      3180
     cgccattctg cacaaaatga agctagctgg atttccgcaa tatatcctca aacttttgca      3240
     ctccttcttg aaaaaccgaa gcttccaagt gatcgtcgac ggtgaactat cacgtcccca      3300
     gctgattccg ttcggggtcc cccaaggtgc tgtactcagc ccgatcctgt acaacatctt      3360
     cacgtcggac gtggtgatgg tgaacggcgt cgagtactac atgttcgcgg atgacacggg      3420
     attcgcctcc gccgacaagc atccagaaat catcatcgag aagctgcaat cggcccagaa      3480
     caagctagaa gactaccagc ggcgctggaa gatcaagatc aatcctgcaa aaacgcaagc      3540
     catctttttt acccggaggc gaagtgaacg ctttcttcca cagtcgcagg tcgtgtcgat      3600
     gggccacgcc gtcccctggt cggaacaagt caaatatctt ggactagagt ttgaccccaa      3660
     acttaagttt gacaagcacg tcgcagcatc tctggagaaa tgtagcaaac tcaccagaat      3720
     gctgtaccct ctcgtcagcc gacgatcgcg actcagcagc agaaacaaga tcctgctgta      3780
     caaattgatc ttccgcccaa ccctttcgta cggcttccca gcatggcacg gctgtgctca      3840
     atctcggcga aagaaactcc aagttcgaca aaacaagctg ctcaaaatga tgctggatct      3900
     cccattcaac ttcccaactg ccgagctgga ggacgcttcg ggagtcgaag agctggactc      3960
     gtggacttcc cgcctacttc gcaatttctg gacaagatgc tcaatgtcag aaaatgactt      4020
     gatcgtcaac cttgtgccgt aatctctgtg atctagtttg taagaaaccc caattttcct      4080
     ctaactatcc cccttctatc agcaagagaa acaggttttt tgtttgatgt gttttcctgt      4140
     tgaaagctta ctttgtaaca taaaattaat ggcatctaaa gatacatgac tattagacat      4200
     agctgcaagg atcctccaaa actctattta gatcttaaac taacttgatg ttcaaagcta      4260
     aacctgaaaa ataaactgaa ttgaattgaa ttgaaaaata aaaa                       4304
//
ID   Jockey-7_DAn repbase;    DNA;    INV; 4695 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4695
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 388-388 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..1886
FT                 /product="Jockey-7_DAn_1p"
FT                 /translation="MSEFDTHTVLQRQQDDRRLSLQRNNAYHSFVSTQDNA
FT                 TANPTKTTQPRSITPSPSNELNPTSLGRARSCSPALLLDKTSYPSLMPTCL
FT                 ATVTSTVTSLATATATSTTTTIVSTARAIPSTATTKSAVQANNAAPYTSAL
FT                 SSKQRSAVQTGLDRYIQIKRKLSPQNSRLGNSAKITRGTSKQSTSEKPIEA
FT                 NRFAILADKSDEIPPEHIVGDNKKPKPPPIYIREKSSNALVSSILNLIGPD
FT                 NFHIIPLTKGNIHETKVQTNTEVNYKILSKYLNDNNKNFYTYQLKSSKGQQ
FT                 VVLKGIEPEVTPAEVTGALKEKGFNVKNVTNILNRERKPQPLFKVELEPET
FT                 KSKPLKKNEVHPIFTLQFLLHRRITVEEPHKRNGPVQCNNCQEYGHTRTYC
FT                 TLRPVCVVCGELHDSHKCPKNKEDPSSKKCGNCGGNHTANYRGCPVYKELK
FT                 SRTHQRVTTARSHITPMKSTRDVFPPTAVKPSAYNEFTDKPESFAAALKMG
FT                 LKSTAPTKPRSSVSPHQPGEQSTNKFEAMICNLQQSMMDFMSFMQTTIQDL
FT                 VRNQNVLIELLVAQNQTK"
FT   CDS           1893..4556
FT                 /product="Jockey-7_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAPLRISLWNANGVSQRKLELAQFLNNNHIDVMLLAE
FT                 THLTNKYNFQIRDYFFYNTNHPDGKAHGGTGILIRKRIKHCFHNSFATNYM
FT                 QATSIEVQMDHRSLKLAAVYCPPRFTISESQFMDYFNSLSEQFIAAGDFNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKPSNKLDCVSPGTPTYWPTDPRKLPDLID
FT                 FAVTKNIPRNLISANSLPDLSSDHSPVLLQLNLHPVAVDKPFRLTTNKTNW
FT                 LKYKKYVSSHIELNPRLNDEADINLSTNALESVLVAAARMSTPQTQETSYN
FT                 HRYTNVEIEQLVQAKRRSRRDWQSNRSPSAKQRFKDATRRLTAALRQEEER
FT                 SQKHFIEQLSPTSSKFPLWRAHSSLSAPIEPAIPIRTSTGNWARSDGERAE
FT                 RFAEHLQNVFQPNTASNGISLPATSDIDTSTYDPIVFRPHELLKIINEQLN
FT                 PKKSPGCDLISPKMIIELPLCAVRAICQLFNAITRHGHFPERWKKSIIIMI
FT                 PKPGKDRTIASSYRPISLLTCLSKLFEKCLLAHITPHLRTHNKIPTHQFGF
FT                 QEKHGTIEQFNRITSEIRNAFEQREYCTAIFLDVSQAFDRVWLQGLMHKIT
FT                 EMLPTNTHKLLKSYLYNRKFSVRCNAAMSDDYIISAGVPQGSVLGPTLYLI
FT                 YTADIPTSMQLTTSTFADDTAILSRSRCPKQATAQLAKHLVAVEKWLSDWR
FT                 IKVNEQKCKHVTFTLNRQDCPPLILNNTVVPVANEVTYLGVHLDRRLTWRS
FT                 HIEAKRTHLKLKASNLHWLINSRSPLSLDYKVLLYNTVLKPIWMYGSQLWR
FT                 NASNSSVDIMQRTQSKILRTITGAPWYVRNANIHRDLDIPLVREEIAQITT
FT                 KYYNRLSVHPNHLARALTRISSSSRLHRNDLPIQR"
XX
SQ   Sequence 4695 BP; 1612 A; 1221 C; 838 G; 1024 T; 0 other;
     agaaggaatc ggatcgtcgg cgagtgcaga cgtgtttatt ttttcttttt ttcctatctt        60
     cttacaagta atttaaataa aagcagtgca agctataaac atcaacacac agtgggcgaa       120
     aagacgctta gtgcgatgaa cttcgtacat tttgtgtaaa taaacaagaa gaaaatccaa       180
     aacattaagc tatgagtgaa ttcgacactc atacggtgct ccaacgtcag caagacgacc       240
     gtcggctctc tctgcaacga aacaacgcat accactcatt cgtgtcaacc caagacaacg       300
     cgaccgctaa cccaacaaaa actacccaac cgcgatcaat aactccaagc ccgagtaatg       360
     aacttaatcc aacatcgcta ggcagggcgc gctcttgctc tccagcgctc ttgttggaca       420
     aaacctcata cccctccctc atgccaacct gcttagccac ggtcaccagt acagtgacgt       480
     cactagcaac tgcaacggct acttctacaa caactacaat agtatcgact gctcgcgcaa       540
     taccatctac tgcaacaacg aaatctgctg tgcaagcaaa taatgcagca ccttacacca       600
     gcgcgctctc ctctaaacaa cgttcggccg tacagactgg cctggatcgg tacatacaaa       660
     taaaacgtaa gctcagcccg cagaactcta ggcttggtaa ttctgccaaa ataactcgcg       720
     gcacctcaaa acaatccaca tcagagaagc ccatagaagc aaacagattt gctattttgg       780
     cagataaatc cgatgaaata ccccctgaac acatcgtagg ggacaataaa aagcccaaac       840
     cgccgccgat ttacattaga gagaaaagtt ctaatgctct cgtaagctca atactaaatc       900
     taatcggacc agacaatttc cacataattc cactaacaaa gggaaatatt cacgaaacaa       960
     aagttcagac taatacggaa gtaaattaca aaattttgtc gaagtattta aacgacaaca      1020
     ataaaaactt ctacacgtac caattaaaaa gcagtaaagg ccagcaagta gtacttaaag      1080
     gtattgaacc ggaagtaaca ccagccgaag ttacaggcgc actaaaggaa aaaggtttta      1140
     atgttaaaaa tgttactaac attttgaata gagaaagaaa gcctcaacct ctgttcaagg      1200
     tagaacttga acccgaaacc aaatccaagc ctctgaaaaa aaatgaagtg catccaattt      1260
     ttactctcca gttcctactt caccgcagaa taaccgtaga agagccgcat aagagaaatg      1320
     ggccggtgca gtgtaataat tgtcaggaat acggccacac aaggacttac tgcacgctcc      1380
     gtccagtatg cgttgtttgt ggagaacttc atgactccca caaatgccca aaaaacaaag      1440
     aggatcccag cagcaaaaag tgtggaaact gtggaggcaa ccatacggct aactacaggg      1500
     gctgtccagt ctacaaggaa ctgaaaagtc gtacacacca aagagtgacc actgctcgct      1560
     cacacattac acctatgaaa tcaacgcgtg atgtcttccc ccctacagcc gtgaaacctt      1620
     cagcttataa tgagttcacc gacaaacccg aaagctttgc agctgctcta aaaatgggcc      1680
     tgaaaagcac cgcccccacc aagccacgat catcagtttc ccctcaccaa ccaggagaac      1740
     agtctacgaa caaatttgaa gcaatgatat gtaatcttca acaaagtatg atggatttca      1800
     tgtcattcat gcagacaact atacaagatc ttgtgcgaaa ccagaacgtt ttgattgagc      1860
     tgcttgttgc tcaaaaccag acaaagtaat caatggctcc acttcgtata tcactgtgga      1920
     acgccaacgg cgtctcacag cgcaaacttg agttagctca attccttaat aacaaccata      1980
     tcgatgtaat gttactcgca gaaactcatc ttacaaataa atacaatttc caaattcgag      2040
     actacttctt ctacaacacg aatcacccag acgggaaagc acacggaggc accgggattc      2100
     tgattagaaa acgcattaag cactgcttcc acaatagttt cgccactaac tacatgcaag      2160
     ctacatctat agaggtacag atggaccacc gttccctaaa gcttgccgcc gtatactgtc      2220
     ctcctcggtt tacaatatcc gaatcccaat tcatggacta cttcaactct ctgagcgaac      2280
     aatttatagc agcaggagac tttaatgcca agcatacgca ctggggatct cgactggtga      2340
     ctccaaaggg aaggcagttg tacaacgcaa taataaaacc aagcaacaag ctagactgtg      2400
     tgtcacctgg gacacctaca tattggccaa cagatcccag aaaattgcca gacttgatag      2460
     actttgcagt cacaaaaaac attccacgca acctgataag cgccaactcc ttaccagatc      2520
     tatcgtctga ccactcgcct gtactcctcc aactaaatct acatccagtt gcggtagata      2580
     aaccattcag actaacaacg aataaaacca actggctcaa gtacaaaaaa tatgtaagtt      2640
     cgcacatcga gttgaatcca cgtttgaatg acgaagctga tatcaactta tccacaaacg      2700
     cccttgaatc cgtcttggtc gcagcagctc gcatgtcaac cccacaaacg caagaaacct      2760
     cgtacaatca tagatacacg aacgttgaaa tagaacagct tgttcaagca aagcgacgct      2820
     cacggcgaga ctggcaatcc aacagatcac cttctgcaaa acaaaggttt aaagatgcta      2880
     cacgaagact cacagctgca ctccgtcaag aagaagaaag gtcccaaaaa catttcatag      2940
     agcagttatc cccaacgagc tccaagttcc cactttggag agcacactca tcactcagcg      3000
     caccaataga acctgcaata ccaattagga catccacagg caactgggcg cgcagcgacg      3060
     gagaaagagc cgagagattt gcagaacatc ttcaaaatgt atttcagccc aacacagcat      3120
     caaacgggat ctcactgcca gcaacatcag atatcgacac atctacgtat gatccaattg      3180
     tattcagacc acacgagttg ctcaaaatca taaatgaaca actcaaccca aaaaaatccc      3240
     caggatgcga cctaatatca ccaaaaatga ttatcgaact tcctctctgc gcagttcgag      3300
     ctatttgcca actcttcaat gcaataacga gacatggaca cttcccagag agatggaaaa      3360
     agtcgatcat cataatgata ccaaaacctg gcaaagaccg cacaattgct tcatcatata      3420
     gaccaattag tttactaacg tgtctatcaa aactcttcga aaaatgcctc ttggcacata      3480
     ttaccccaca tctcagaaca cacaacaaaa tcccgactca tcaattcggt tttcaagaaa      3540
     aacatggaac catcgagcaa ttcaaccgca taacttctga aatcagaaat gcattcgaac      3600
     aaagggagta ctgcactgcg atatttctgg acgtatcaca agctttcgac agagtatggc      3660
     tacaaggttt aatgcacaaa ataacagaaa tgctcccaac caacactcat aaacttctga      3720
     agtcatacct ttacaacagg aaattctcag taagatgtaa tgctgccatg tccgatgatt      3780
     acatcatcag tgccggagtt cctcaaggca gcgtgttagg accaacactc taccttatct      3840
     acactgcgga catcccaacg agcatgcaac tcaccacatc cacttttgct gatgacacag      3900
     cgatcctaag ccgatcgaga tgccccaagc aagcaacggc gcaacttgct aaacacctgg      3960
     tggcagtgga gaaatggcta tccgactggc gaatcaaagt taacgaacaa aaatgcaaac      4020
     acgtaacgtt cacacttaac aggcaagact gccccccact tattctaaac aacacagtgg      4080
     ttccggtagc aaatgaagtg acatatcttg gcgtacacct cgatagacgt cttacttggc      4140
     gcagccacat tgaagccaaa agaactcatt taaagctcaa agccagcaac ctccactggc      4200
     ttatcaatag ccgctcgccc cttagcctgg actataaggt actcctatac aacacagttc      4260
     tgaaaccaat ctggatgtac ggctctcagt tgtggcggaa tgccagtaac agcagtgtgg      4320
     acataatgca aagaacacag tcgaaaattc tcagaaccat caccggggca ccgtggtacg      4380
     ttcggaatgc aaacattcac agggaccttg acataccact cgtcagagaa gagatagcac      4440
     aaattacaac aaagtactac aacaggctat cagtacatcc aaatcatctc gcgagagccc      4500
     tcacgcgaat ttctagcagt tcccgcctac accgcaacga ccttccaatc cagcgctaat      4560
     tattaggacc atgtagtctc tattcagtta aattaaactg ttagttaacg tattatttta      4620
     agatttgcaa ccttattgtt agactcataa agagaagatc caataaataa aatcaagctt      4680
     aaaaaaaaaa aaaaa                                                       4695
//
ID   Jockey-7_DEl repbase;    DNA;    INV; 6241 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-6241
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 560-560 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. It is likely a telomeric
CC   retrotransposon.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..619
FT                 /product="Jockey-7_DEl_1p"
FT                 /translation="GCPIYQKEKKALFVNQINLGDIREARKETRPQSAVYN
FT                 YPKLPVEIARPNPLKEIKEKRYPSFHRPSPHDSAIQKRLNRIRRGTEPKNR
FT                 TKNPAESHLKAFQQGLREKYKRTTSQVNDEIPPQTKQQTGESPPTTSRAAR
FT                 AFFKPRKIENENPTYIKKSPTETKPINNPTPTQENITSQAFEARINSLEIK
FT                 LDNFINKIMTLLNNLN"
FT   CDS           join(679..3165,3135..3992)
FT                 /product="Jockey-7_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcritpase."
FT                 /translation="MTHTTNNINNNTNTLKLCFWNACGAGNKTNEIEAFIV
FT                 KEKIQIMMVIETKLHPNSKALNFPGFHTYHARNPNSNRKGGTAIIVNKNIR
FT                 HMALSPIETEFIQSSPIVLIPSSGIRADMVIIAPVYCPPTYKWSPSHFTQM
FT                 FNYFKEALGGKSKFILSGDWNAKHSNWGNYRSCERGRHLHDSLQNSRSLQT
FT                 LATGEATHYPFDSRKQPSALDFAIYKGFRRQNLKITASQDLSSDHVPLQLT
FT                 INFNKTNIMQEKTKTTIITKQTNIPKFKKLLEDKILLNTDIKSGQDIEDCI
FT                 DILMRNINNSAKEATPQTHTQNRNNNRHKENPNLIKLDEKTLNLLNQKREL
FT                 NKIYRATGTKEAKTWFKAAQNKLAKEIKKLREKNINDKIKDIDPTDRYKME
FT                 KLWKMTNIIKKQEQPCWPLKKEIDPSKPTPASLWTRTADEKAEVLALHLES
FT                 RFTPNLRNEITDREQIKKELMNHKTLNAAMTRAQNYSNLRPVTLAELNTLI
FT                 DALETKKAPGHDKVDNKLIKTLPIKARLYLVLIYNRILQTGHFPSQWKHAT
FT                 ITMILKPKKSPSCASSYRPISLLPCFSKILEKILMVRLFETESFAKAIPHH
FT                 QFGFRKEHSAEHQLSRVTQFILKAFEEKEVCSATFVDVSEAFDRVWHDGLL
FT                 VKLAKLLPTCMFNVLENYLLNRTFSVKLGNGTTSKTCKITAGVPQGGNLAP
FT                 ILFSVFTSDMPLPIPINPSYERSFPNYFPKNMLLATYADDTVILSSASTAN
FT                 TATELSNTYLSKYCSWAKHWDISINAKKTGHILFSLRGKENPYTTPLVDGQ
FT                 RTKKQNKQCYLGVILDKNLLLNLIFFNKLTLKPHILQLRAKIFSSYKKLEW
FT                 LLGKKSKLPDNTKTLLFKQIISPIWHYSIAVWGSLISETSAKQIQTVENKL
FT                 IRKSIGASRYTKQSTIREIHNINSFSEVFAHSSQRFAISTVNHRNPLIRDL
FT                 ILKPYIPERLAASRSRYLDQYQKHLLPAKANIPEPQIETIYNSTYGYTEGE
FT                 EKQILKKLREKFRKSLPTLLRLTDEREELEENEKEIKKKNEKKRALKDKPP
FT                 ERWCELLINKYNKLFREGRITREELLDKMEGQPHGIIRIIIPDFQTHIGQQ
FT                 TLYYSTN"
XX
SQ   Sequence 6241 BP; 2475 A; 1451 C; 1002 G; 1313 T; 0 other;
     gggttgtccg atctatcaaa aagaaaagaa agctttattt gtaaaccaaa taaatctagg        60
     agatataagg gaggccagaa aagaaaccag gccccaatcc gctgtataca attatcctaa       120
     attgccagta gaaattgccc gaccaaatcc actaaaagaa ataaaggaaa aaagatatcc       180
     ctcgttccat cgcccctcac cccatgactc tgccattcaa aaacgactca accgcatacg       240
     aagaggcacc gaaccaaaaa acaggacaaa aaacccagct gaaagtcacc taaaagcttt       300
     tcaacaagga ctaagggaaa aatacaaaag gacaacatca caagtaaatg acgagattcc       360
     cccccaaaca aagcagcaaa ctggtgaaag cccaccaaca acaagccgtg ctgctagggc       420
     atttttcaaa cccaggaaaa ttgagaatga gaacccaacc tacattaaaa agtcccctac       480
     agaaacaaag ccaataaata accccacccc gacacaggaa aatataacta gccaagcctt       540
     cgaagcaagg atcaatagct tagaaattaa actggacaac ttcataaata aaataatgac       600
     cttattaaat aatttaaact gagaaaaaaa aacaaaataa aataacacaa acctaccgca       660
     aaaatagaat cctattaaat gacacacacc acaaacaata ttaacaataa cacaaacaca       720
     ctaaaattat gcttctggaa tgcctgtgga gcaggaaaca agacgaacga aattgaagcc       780
     tttatagtca aagaaaaaat acaaataatg atggtcattg aaaccaagct acacccaaac       840
     tcaaaagccc tcaattttcc aggattccat acttaccacg cacgcaaccc taactcaaat       900
     agaaagggcg gcactgccat aatagtaaat aaaaacataa gacacatggc cctaagtccc       960
     attgaaactg aatttattca aagctcacca atagtcctca tcccatcaag cggtattcga      1020
     gcagacatgg tcatcattgc ccccgtatac tgtccaccta cctacaaatg gagtccaagt      1080
     catttcaccc agatgtttaa ttacttcaag gaagcactgg gcggaaagtc taaatttatc      1140
     ttgagtgggg actggaatgc caaacattca aattggggca actaccgctc ttgcgaaaga      1200
     ggcagacacc tacatgacag tctacaaaac tcaagaagcc tacagactct agccacaggc      1260
     gaagcaaccc attatccatt tgacagcaga aagcagcctt cagcacttga ctttgccatc      1320
     tacaaaggat ttagaaggca aaatcttaag atcactgcct cccaagacct cagctctgac      1380
     catgttcctc ttcagcttac tattaacttc aacaaaacaa acatcatgca ggaaaaaaca      1440
     aaaactacaa taatcacaaa acaaactaat attcctaaat ttaaaaaact actggaagac      1500
     aaaattctac taaatacaga cattaaatca ggacaggaca tagaagactg catcgatata      1560
     ttaatgagaa acatcaacaa ttcagccaag gaggcaaccc ctcaaaccca cacgcaaaat      1620
     agaaacaaca acagacacaa ggaaaaccct aacctaataa aactagacga aaaaaccctt      1680
     aaccttctta accaaaaacg agaacttaat aaaatataca gagctacagg aacaaaagaa      1740
     gcaaaaacat ggttcaaagc tgctcaaaac aaactggcca aagaaattaa aaaacttagg      1800
     gaaaaaaaca taaatgacaa aataaaagat attgacccaa cagacagata caaaatggag      1860
     aagttatgga agatgacgaa cataattaaa aaacaagagc aaccctgctg gcccttaaaa      1920
     aaggaaattg acccaagtaa gcctacacca gccagcctct ggaccaggac tgcggatgaa      1980
     aaagccgaag tccttgcact tcacctagaa tcccgattta ccccgaacct aaggaacgaa      2040
     attacagaca gagaacaaat taaaaaggaa ttaatgaacc acaaaacact taacgcagca      2100
     atgacaagag cacagaatta tagcaacctt aggccagtca cattagcgga gcttaatacg      2160
     ctaattgatg ccctagagac taaaaaggcc cctggacatg acaaagttga caacaaactg      2220
     attaaaaccc taccaataaa agccagactg tatctcgtcc ttatttacaa taggattcta      2280
     caaacaggtc attttccgag ccagtggaaa catgcaacaa tcaccatgat tctcaagcca      2340
     aaaaagtccc cttcctgtgc aagctcctac agacccataa gtcttttacc ctgcttttcc      2400
     aaaatactcg aaaagatcct aatggtcagg cttttcgaga ctgaatcctt tgctaaagcc      2460
     attcctcacc accagtttgg ctttagaaag gaacacagtg ctgaacatca actaagcagg      2520
     gtaacgcaat ttattttgaa ggcctttgaa gagaaagagg tgtgctcagc aaccttcgtt      2580
     gatgtctcag aggcatttga cagggtctgg catgatggac tccttgtcaa actagctaag      2640
     cttctcccta cctgcatgtt caatgtccta gaaaactatc tgctgaatag aacattctct      2700
     gtaaagctag gcaacggaac tacatctaaa acatgcaaaa taacagctgg agtgccccaa      2760
     ggaggaaacc tagcgcccat actattctca gttttcacat cagacatgcc gcttccaatc      2820
     ccaattaacc ccagctatga aaggtctttc ccaaactact tccctaaaaa tatgctactt      2880
     gccacatacg ctgacgacac cgtcatcctt agtagtgcct caactgcaaa tacagccact      2940
     gagttgagca acacatatct aagcaaatat tgtagttggg ctaaacattg ggacatctca      3000
     ataaatgcga aaaaaacggg acacatacta ttttccttaa gaggaaagga aaacccgtat      3060
     actaccccac ttgttgacgg acaaaggaca aagaaacaaa acaagcaatg ctacttgggg      3120
     gttatattgg ataaaaactt actcttaaac ctcatattct tcaattaaga gcaaaaatct      3180
     tctcaagcta caaaaaattg gaatggttac taggcaaaaa aagcaaactg cctgacaaca      3240
     ccaaaacact cctctttaaa caaataatat cgcccatctg gcactactca atagctgttt      3300
     ggggatcctt aatatcagaa acgagcgcca aacaaattca aactgtagag aataaactaa      3360
     taagaaaatc tattggtgca tctaggtaca caaaacaatc cactatcaga gaaatccaca      3420
     acattaattc tttctcagaa gtctttgctc attctagcca aaggtttgcg atttcaacag      3480
     taaaccacag aaatccactc ataagagacc ttattctaaa accgtatatc cctgaaaggc      3540
     tagcggcgag cagatccaga tacctagacc aataccaaaa acacctgctt ccagcaaaag      3600
     caaatatccc tgaaccacaa atagagacca tttacaatag cacctacggt tacacggaag      3660
     gggaggaaaa acaaatatta aaaaaattaa gggaaaaatt tagaaaaagt ctacctacat      3720
     tactgcgact aacagacgag agagaggaac tagaagaaaa tgaaaaggag atcaaaaaga      3780
     aaaacgagaa aaaaagggca ttaaaagata aacccccaga gagatggtgt gaattgctta      3840
     taaataaata taataaactt tttagagagg gaagaataac acgagaagaa ctactggaca      3900
     aaatggaagg acaaccccac ggcatcataa ggataatcat acctgatttc caaactcaca      3960
     taggacaaca aaccctatac tattcaacaa attaaaaaaa aaaataataa taataaaagg      4020
     gagaggggtc aaaataaaat actgaaatgg gactataatc aactcacctg tttcccacaa      4080
     gcacctgctc ctgccatgga tgactccaaa ctgtcctgct ttctacggga agactccaac      4140
     tgcctagcag cgccatgatg ctgctctcat gggttccaca atggttctct gcccacactg      4200
     acgcgcctgg ctggatatga ctgcgaggga aaataaaaag cataattaaa aacacaatta      4260
     aaataaataa aataaataac aaattcaccc gtctgaacca agattggact tccgcctggt      4320
     ttccggaaca cacgactgcg gcgcgggaga tggctgctaa aataaaaata ataacataat      4380
     taaaacacac tcacaataaa taaaatcaaa acaaaacaca cttaccaacc ccaaccaccc      4440
     tccgactgcg gcgatggaga ttccataagg aaacacggac gcgtaaacta aatcaaaatt      4500
     aaattaatgc cagaaataaa gggtccttgc cataaacagc tctcccaaat taaggggtcc      4560
     ttactgctct tgactctcct aaactggacc aagaaattgt tcggcgctct cactggaggt      4620
     tctgcaaact gcaactctcc caaaaaaggg gtccttacca cagttcgctc tcccaaactg      4680
     agctattatg aacacaaata aaaatcaaga cacttggaat aattaagggt ccctatcaac      4740
     cacagctctc cctctgggtc cttgctgtaa aggtcgactt tccaaaatgc gagacttaaa      4800
     cagaaacaca aaaaaattgc tcacagcaaa gggtccttgc catgtgcagc tctcccaaaa      4860
     aaggggttcc ttgcaactga ctctcctaaa ctggagaaat acaataaaca cgacacatga      4920
     tgcgcgatta ggggtcctta tcaaccacag ctccccattg gggatattgt tacaaaggct      4980
     gactctccaa aaacgcagag gacacaatgg accaaaacag gactattgaa gtaacagaca      5040
     atgcactcac ctgcaatacc tcatacgaat gtggaacctg atctccacaa gcacctgtta      5100
     ctgccctgaa cgcttcctgg cctatagaga aaatcctgcg ctgtatgact gaattgcgcc      5160
     cccttttgac gatgatgccg aaagctaaag cgatgtaatc ctacaagaac ttctagacat      5220
     gacagcggcg agggatacca tccatacaga cgctcggctg cctcagccaa cggactcctt      5280
     actgtcagac gagccactga atccaacatt ggcttttcta aatccagcaa aggtcggcct      5340
     agctgggtcg atcttttcct gagtttcctg acgaccgcga cagtggagag ggacgaagct      5400
     acgactgtga cggcggcgat ggaagaacct gcgataaaac aaaataaaaa ataaataaat      5460
     aataatatta aagcttaaca tgcaataaac aaaattaaaa catattcata caaaacacaa      5520
     atgcgatcca gtatcctcta aaaatgtacg ctgcacctgc aaaataataa aaattaaaaa      5580
     aaataacaca tactcaatca acaaatttaa atcaatttaa ataaacacaa acttatctga      5640
     cacaaagatg atccagctcc agcaaaagag gaaaaaaaag gggatctctg ctgcgcctgc      5700
     aaaataataa aaataaaata ttataacact taatcaacaa atttaaatta aatattactt      5760
     acctacatta aagggtcctc tggtttctga aaaatctggg tcttctgcta cggacgaacc      5820
     tgcaagaaac ataaataaaa tattatttta aactaaacgc gcattaaaca aatttaaaaa      5880
     cacaaattta catgacacaa aagcgatcca ataccagcaa aagaaatctc cgctgcgcct      5940
     gcgaaataat aaaaataaaa attataaacg catactaaat taacaaatta aatttaaaaa      6000
     ctacttacct gcaataaaga gtcctccggt atcctaaaat ctgtgtctgc cgctacggac      6060
     gaacctgcaa gaattataaa taaaatatta ttttaaacaa aacgcgcatt aaacaaattt      6120
     aaaaaaaaca caaacttacc cgacacaaaa gcgatccaat accagcataa taaatctccg      6180
     ctgcacctgc gaaacaataa aaataaaaat tataaacaca cactaaagta acaaatttaa      6240
     a                                                                      6241
//
ID   Jockey-7_DEu repbase;    DNA;    INV; 4138 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4138
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 953-953 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           520..1311
FT                 /product="Jockey-7_DEu_1p"
FT                 /translation="MVKSIDEYRSLVKILASDFVKFHTYQLKHERAFRVVI
FT                 KNLHFSTDIEVIKRDVESKGHSVRNINNIKRRGTKEPLNLFFLDIEPNNNN
FT                 KDIYEVKHIDNAIVKIEPPRKAKDIVQCHRCQEFGHTKSYCSKTHRCVKCS
FT                 RKHPSNLCTKDKEQPAKCANCNENHAASYKGCRVYKELISKKLTTAGKQMH
FT                 YKDHTKNVSEISQTPIVPTQQPKNYQSYAQVAAGNNATSTNTSLERIEHLL
FT                 EKQFELTNNLLNMIMLLVNKLCK"
FT   CDS           1305..3998
FT                 /product="Jockey-7_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQISLNLGIWNANGLSNHVNEISLFLKTNSIDIMLVS
FT                 ETHFSSKSFFRVVGYDTIRADHPSDRAHGGAAIIVKKGLKFKIMDSTRENA
FT                 MQAATILIKCMHADVSISAIYLPPRFTIKELDFKNFFQGLGTKFIVGGDFN
FT                 AKHPYWGSRLINPKGSELYKCIRNNNISTLSTGKPTYWPTDMRKTPDLIDF
FT                 VVFSGIPQTHMRLMESFDLNSDHSPIIATYSTIAQMLDKPYRVISASTDIL
FT                 GFKSYLEEAINVDISLNTGEDIDYAVEFFTTAIHKASYLNTNHSQRNQQSN
FT                 QLYLSTEIREKIKLKRDLRKRWQETRYPADKRLYNRAASELKQLLSNLRNE
FT                 SLAAYLRNLDPNSSNKEYNLWRATKYLKRPCKRNTIIRKNNGTWCRSDDEQ
FT                 AEAFAQHLHSVFQPNDISNPTTEAEVENFLGSPCQMSLPIKRIHFDEVVTE
FT                 IKCLSNKKSPGPDKIDGITLKNLPLNCIRFLTLVFNAMLRLDHFPSQWKCA
FT                 EIIMILKPNKTESELSSYRPISLLTIFSKVFEKILLKRMLPILDELSIIPE
FT                 YQFGFRKGHGTTEQCHRVTNEIVSALENKKYCTAAFLDVQQAFDRVWHKGL
FT                 LYKIKKWLPAPYYLLLKSYLSKRCFYVQQRNETSTLILINAGVPQGSVLGP
FT                 VLYTLYTADMPVTNNCTIATYADDTSILATSSCRDEASQLLQSELNIIASW
FT                 FLRWKIKINSLKSVQITFALRPGNCPNVTLYGSAIPQDSCVKYLGMHLDRR
FT                 LTWKPHIKAKCQQLRIKTLKMSWLLNKKSAASLENKILLYKTILKPVWTYA
FT                 IQLWGTASNSNIDILQRYQSKTLRKIVDAPFYVSNANIHRDLNIPTIKEEI
FT                 NKYSRKYTDRLHNHTNNLALGLVDNSSTYRRLKRFHVLDLPDRLI"
XX
SQ   Sequence 4138 BP; 1498 A; 869 C; 727 G; 1044 T; 0 other;
     cattcgggat cgaatactct ccgagtcaag acgtgcctga attctacgcg gaagctacgc        60
     ttaagctatc aaaaacaaac gaaaacaaaa taaaataaaa acataacggt gttatctgat       120
     aagcaccata aaagtgttgt tgtcaacatg agcgacgaag aagacgatac ctcagtttgg       180
     agctggcaga gaataaaacc taagccaaag ggaataaaga gacaaaatca agtttcaccg       240
     attctcctaa agaaaaaact tgccctggac accgaaccca gcattagctc caataaattt       300
     tctatcttag cggaacgctc aacaactgaa aaaggtaacg atgcagacga aaacgaagcc       360
     ctggacatga taactgaaga caacattgct gaacctgcca agccgcctcc catcttctta       420
     tcggatgtta gtgatataag tagtatgcta gcctacctcg aaaagaaata aaaagaaaat       480
     ttccattata aaactcaacg agatggccaa gtgagaatta tggttaagtc aattgatgaa       540
     tataggtccc ttgttaaaat tcttgctagt gattttgtta agtttcatac ataccagctt       600
     aaacatgaaa gagcatttag ggtcgttata aagaatttgc acttctctac ggatattgag       660
     gtcattaaac gagacgtgga gtccaaaggt cactcagtca ggaacataaa taacattaaa       720
     agacgtggaa ccaaagagcc cttaaatcta ttctttcttg acatagagcc caacaataat       780
     aacaaagata tatacgaagt gaagcacatt gataacgcga ttgtcaaaat agaaccccct       840
     cgtaaagcaa aagacattgt tcagtgccac cgttgtcagg aattcgggca cacaaaatcc       900
     tattgctcca aaactcatag gtgcgtaaaa tgctctcgta agcatcccag caacctatgt       960
     acaaaagata aagaacaacc ggcaaaatgt gcgaactgca acgaaaatca cgctgctagt      1020
     tacaaagggt gtagggtcta taaagagctc atatcaaaaa aattaactac ggctggaaaa      1080
     cagatgcact acaaggacca tactaaaaat gtttctgaaa tatctcaaac acctatagtg      1140
     ccgacccaac aacctaaaaa ctatcaatct tacgcccaag ttgctgcagg aaataatgct      1200
     actagtacga atacctcttt agaaagaata gagcatctct tagagaaaca atttgaactt      1260
     acaaataatt tacttaacat gataatgtta ctggttaata aattatgcaa ataagtctaa      1320
     acttaggaat ctggaacgcc aatgggcttt ccaaccatgt caatgaaata tctttatttt      1380
     taaaaacaaa ttcaatcgac atcatgcttg tttctgaaac gcatttctcc agtaaatcat      1440
     tttttagagt agtcggatat gacacaataa gagctgatca tccgtctgat agagcccatg      1500
     gaggcgcagc aattattgtt aagaagggtc taaaatttaa aatcatggac agcactaggg      1560
     aaaatgctat gcaggctgcc acaattctga ttaaatgcat gcacgcagat gtttcaatct      1620
     cagcaattta cctcccacca agattcacaa taaaagagct cgatttcaaa aacttttttc      1680
     aaggactggg gacaaagttt attgttggag gcgacttcaa tgccaaacac ccatactggg      1740
     gctccagact cattaaccca aagggatccg agttgtacaa atgcatacga aacaataata      1800
     tatcaactct ctctactggt aagcctacat actggccaac ggatatgcga aaaactccag      1860
     acttgattga cttcgtagta ttttctggta tccctcaaac acacatgcgc ctaatggaaa      1920
     gttttgatct taactcagat cactcgccga taatagcgac atatagcaca atagctcaaa      1980
     tgctcgacaa gccctataga gtcatctctg cttccacaga cattctcggg tttaaaagtt      2040
     acctagaaga agccataaac gtagacattt cgttaaatac aggagaggac atagattatg      2100
     ctgtggagtt tttcacaact gcaattcaca aagcgagcta cttaaatacg aatcacagcc      2160
     aaagaaacca acaatcaaac caattgtatc tttcaactga aattcgggaa aagattaaac      2220
     tcaaaaggga cctgaggaaa cgttggcaag aaactcgcta tcctgctgac aaaagattat      2280
     ataatagagc ggcatctgag cttaaacaat tattgtctaa cctaagaaat gaatctctag      2340
     cggcatatct gagaaattta gaccccaatt ctagcaacaa agagtacaat ctgtggagag      2400
     ccactaaata tctgaagaga ccatgcaaaa gaaacacaat catccgcaaa aacaatggaa      2460
     cttggtgtag atccgatgat gaacaagctg aggcatttgc acaacacctg cactctgtgt      2520
     tccagcctaa cgacatttcc aatcctacaa cggaagctga agtagaaaac tttcttgggt      2580
     caccctgtca aatgagcttg ccaattaaaa gaatccattt tgacgaagtc gtgacagaaa      2640
     ttaaatgctt gagtaataaa aaatcgccag gcccggacaa gatagacggc atcactctca      2700
     aaaatctacc attaaattgt atacggtttc ttacgctagt gtttaacgcc atgctcaggt      2760
     tagaccattt cccaagtcaa tggaaatgtg cagaaatcat catgatcctc aagccaaata      2820
     agacagaatc agaactatca tcttaccgtc ccattagtct gttgacaata ttctcgaaag      2880
     tgtttgaaaa aatactattg aagaggatgt tgccaatttt ggacgaactt tccatcattc      2940
     ctgaatacca attcggattc agaaaaggtc acggcaccac tgagcaatgt catagggtca      3000
     ccaatgaaat tgtatctgcg cttgagaaca aaaaatattg tactgctgcg ttcctagatg      3060
     ttcaacaagc gtttgatcgt gtttggcaca agggattact ctacaagatt aagaaatggt      3120
     tacctgcccc atattatcta ttactgaaat cctatttgtc caaaagatgc ttctacgtgc      3180
     agcagagaaa tgaaacgtca acactaattc tcataaacgc aggcgttcca caagggagtg      3240
     tattaggacc agtcctttac accctataca cggcagatat gccagtaaca aataattgca      3300
     ccattgcaac atatgctgac gatacatcta tcctggcaac aagttcatgt cgagacgaag      3360
     cttctcaact gttgcaaagt gagctcaata ttattgcatc ctggtttctt cgctggaaaa      3420
     ttaaaatcaa ctccctgaag tctgtccaaa taacatttgc attaagacca ggaaactgcc      3480
     caaacgtgac actttacggc tcagccattc cacaagattc atgtgtgaag tatcttggca      3540
     tgcacctcga ccgcagacta acatggaaac cccacataaa agcgaaatgt caacagctca      3600
     gaataaaaac actgaaaatg tcctggctac ttaataaaaa atctgcagcc tctttggaaa      3660
     ataaaattct cctctacaaa accattctga agcctgtttg gacctacgct atccagctct      3720
     ggggaacagc tagcaactca aatattgata tacttcagcg ctaccagtcg aaaacattgc      3780
     gaaaaattgt cgatgctcca ttttatgtaa gcaatgcaaa catccacaga gacctaaaca      3840
     ttccaacaat aaaagaagaa attaacaaat acagtaggaa atatacagac agacttcaca      3900
     atcatacgaa taatttagcc ctaggcctag tagacaatag ttcaacatat agaagactta      3960
     aaagatttca cgttcttgat ctccctgata ggctaattta agtaaacaag atgttatatt      4020
     taatagcagg tttcactgga agtctgctac tcctgtcctg taaaatatta gttataaaat      4080
     ttacttattg tcacaagaca gattgtaaat aaatattgaa ttaaaaaaaa aaaaaaaa        4138
//
ID   Jockey-7_DF repbase;    DNA;    INV; 4784 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4784
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 975-975 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..1975
FT                 /product="Jockey-7_DF_1p"
FT                 /translation="MNPNEVRAQRQRKQDERRLSLQKSNAYFSFVSTAEAP
FT                 TTKASAVVDQPRSLTPTPSNELKPILNXRARSLSPYMSATMQSGVSDKCIS
FT                 PLPGPASPQLPTCLATVTSTVTSLATVNAMTTTTSVSSACPIQSSVLPAVS
FT                 ANLSTAASAAPSEASTKKQGPSIQTGMDRYINIKRKLSPQGTKMGNAAKIN
FT                 RAFPSQGTVQNSNTANRFQLLADTSDEIASTVLDTDKKKPRPPPLYIREKN
FT                 SNNLVNIIIDLIGKDSFHVIPLTKGEIHETKVQVKSEESFRKLTELLDAKK
FT                 KNYYTYQLKSSKGQQVVIKGIEPDVSTAEVEQALKDKGFNVKTVINIRNRN
FT                 KQPQPLFKVELAPDSKALKKNEVHPIYNLQFLMHRRITVEEPHKRNGPVQC
FT                 ANCQEYGHTKSYCTLRSVCVACGGLHTSAKCELKNEPNSKKCSNCGGDHTA
FT                 NYRGCPVYKELKSRINQRVSTARSHHTPLIPSKLTPEVFFSSAARSSLGSS
FT                 TTNKNVSFASVLKSGHASPAYNVQPPPSVSHQLAEHTENRMETMMLSLQQS
FT                 MDEFISFMRTTMQSMLTNQNILIQMLQNTLSK"
FT   CDS           1982..4645
FT                 /product="Jockey-7_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAPLRIALWNANGVSRHKLELAQFMNDNEIDVMLLAE
FT                 THLTNKYNFQIRGYMFYNTNHPDGKAHGGTGVLIKNRIKHHFHNTFATNYL
FT                 QATSINIQLGCHNLALAAVYCPPRFMISEAQFTDYFNSLGKYFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYYAIINPSNKLDCVSPGSPTHWPSDPRKLPDLID
FT                 FAVTKNIPRNLISASSLSDLSSDHSPVLFSLNQQPVSNDNPVMLTSRSTDW
FT                 LKFKKYVSSHIELTPQLTGEDDINRTVCMLESVLASAARIATPPRQNTTHN
FT                 IKNTNAEIEQLVLAKRRSRRVWQSLRSPSAKQQLKEASRRLTKALRQEEDR
FT                 SQHRYIEQLSPFSSKFPLWKAHSTLSPPTVTVTPIRTPAGCWARSDKDRAD
FT                 TFAAHLENVFQPNPVTNVRNIRSQTEDDLPIAEPIVFRPCEVIKIIKEQLQ
FT                 PRKSPGCDLITPKMLIELPLCAVGTICQLFNAMTRLGCFPKRWKKSIIIMI
FT                 PKPGKDHTLASSYRPISLLSCLSKLFEKCLLTRIIPYFRRHNIIPAHQFGF
FT                 REKHGTIEQVNRITSEIRSAFENREYCTAVFLDVSQAFDRVWLDGLMHKIK
FT                 IMLPNSTHKLLKSYLYNRIFVVRCNTSISAERNIEAGVPQGSVLGPTLYLL
FT                 YTSDIPTSSQLTMSTFADDTAILSRSRCPQQASAQLAAHLEVVEKWLSDWR
FT                 IKVNEQKCKQVTFTLNRRNCPNLTLNNIVLPQSDDVTYLGVHLDRRLTWRT
FT                 HIEAKRTHLRLKANSLHWLINSRSPLSLDYKVLIYNTVLKPIWTYGSQLWG
FT                 SASNSNVEIVQRAQAKILRIITGAPWYVRSVNIQRDLNVLPVRDVIAQHMQ
FT                 NYYTKLSTHPNHLARALTLVCSRSRLRRNDLPIQR"
XX
SQ   Sequence 4784 BP; 1628 A; 1219 C; 880 G; 1055 T; 2 other;
     tcaawcataa ttccgaacgt cggcgagtgc agacgtgcat ttatttattt ctcttgtgct        60
     ccgaaagaca atcgataaaa acaaaaaaca aaaaccccga tataaaataa aaataaacgg       120
     cgaaaagacg cttatcgcga tgaaaagtcg caagttaata ttattttgtg tttttaatta       180
     gtgcttctaa tactgaaata caaataaaac caaataaaaa aatcaaacaa ataaggtgat       240
     gaacccaaac gaagttcggg cgcagcgcca acgtaagcaa gacgagcgcc ggctctctct       300
     gcaaaagagc aatgcatact tctctttcgt atcgacagca gaagcaccaa caacaaaagc       360
     ttctgcagta gtcgatcaac cgcgatcgtt aaccccaaca ccttccaacg aactcaagcc       420
     tattcttaac gawagggcgc gctctctttc tccatatatg tcagcgacga tgcaaagcgg       480
     ggtaagcgac aaatgcattt cccctcttcc tggccctgcc tcaccccaac tgcccacatg       540
     cctggccacg gttaccagca cagtaacgtc attagcaact gtaaatgcaa tgacaacaac       600
     aacatcagtt tcgtcggcat gcccaataca gtcgagcgtt ttacctgctg tctcagcgaa       660
     tttatcaact gcagctagcg cagcaccgtc agaagcttca actaaaaagc aaggtccgtc       720
     catacagact ggcatggatc gctacataaa cattaaaaga aaactaagcc cacagggcac       780
     gaaaatgggc aacgccgcaa aaatcaatag ggctttccca agccaaggaa ccgtgcaaaa       840
     ctctaatact gcaaatagat ttcaactttt ggctgacacg tccgatgaaa tcgcttctac       900
     agttttggat acggacaaaa agaaaccgag gccgcctccg ctttacattc gagagaaaaa       960
     ctccaacaac ctcgttaata taataatcga tctgattggt aaagatagct tccacgtaat      1020
     ccccttgact aaaggagaaa tacatgaaac aaaggtccaa gtcaaaagcg aagaaagctt      1080
     tagaaaactg acggagctcc tagacgccaa gaaaaagaac tactacacct accagctaaa      1140
     aagtagtaaa ggtcaacaag ttgttataaa aggaatagaa ccagacgtaa gcactgctga      1200
     agtcgagcag gcactaaaag acaaaggttt taacgtaaaa acagttataa acatacgtaa      1260
     ccgaaataaa caaccgcaac ctctctttaa agtggaactt gcacctgact ctaaggcgct      1320
     taagaaaaat gaagtccatc ccatctacaa tctccagttt ctaatgcatc gcagaatcac      1380
     ggttgaagag ccgcataaac gcaatggccc agtccagtgc gcaaattgcc aggaatacgg      1440
     acacaccaaa tcttactgca cactccgctc tgtatgcgtc gcctgcggag ggctgcatac      1500
     ctcagctaag tgtgaattaa aaaatgagcc aaatagcaaa aagtgtagta actgcggagg      1560
     agaccacaca gcaaactaca gaggctgtcc agtatacaag gagttaaaaa gtcggataaa      1620
     ccaaagagtc tcaacagcac gatctcacca cacaccattg ataccctcta aactcacacc      1680
     tgaagtcttc ttttcgtcag cagcccgatc atcactcggc agttccacta caaataaaaa      1740
     cgtaagtttt gcaagcgttt taaaatcggg tcatgcgagc cccgcttaca atgtccaacc      1800
     accaccttca gtctctcacc aactagcaga gcacacagaa aatagaatgg aaacgatgat      1860
     gctcagtttg caacaaagta tggatgaatt catttcattt atgcggacga ccatgcaaag      1920
     tatgttgaca aatcagaata ttttgattca gatgctccaa aacactttat caaaataatc      1980
     aatggctccc ctgcgcattg cactgtggaa tgccaacggt gtttcacggc acaaacttga      2040
     gctagcacaa tttatgaacg acaatgaaat cgacgtaatg ttacttgcag aaacccacct      2100
     taccaacaaa tataatttcc aaatccgagg gtatatgttt tacaacacca atcatcctga      2160
     tggaaaggcc cacggaggca ctggagtcct gattaaaaac cgcatcaagc accactttca      2220
     caacacgttt gctactaact acctgcaagc cacatctatc aatatacagt tgggttgtca      2280
     caatctagct ctagcagcgg tatactgtcc tcctcgattc atgatatccg aagcccagtt      2340
     tactgactac ttcaactcac taggcaaata cttcatagca gcaggagact acaacgccaa      2400
     gcatacgcac tggggatctc gcctcgtgac gccgaaaggt agacaactgt attatgcaat      2460
     tataaatcct agcaacaaac ttgactgcgt ttcccctgga tcacctacac actggcctag      2520
     cgaccccaga aaactgccag acttgataga cttcgcagtt acaaaaaaca tcccacgaaa      2580
     tctaattagc gccagttctc tctcggatct atcatcagat cactcgcctg tactttttag      2640
     cctaaaccaa cagccagtta gtaatgacaa ccccgtcatg ctaacttcta gaagcacaga      2700
     ctggctcaaa ttcaaaaaat acgtaagttc gcacatcgaa cttacaccac agctaaccgg      2760
     cgaagacgac atcaacagaa ccgtatgcat gctagagtca gttttggcct cagcggcacg      2820
     aatcgcaaca ccaccaaggc aaaacacaac acataacata aagaatacaa acgcagaaat      2880
     agagcagcta gtcctagcaa agcgtcgttc ccgacgtgta tggcaatctc ttcgatcgcc      2940
     atctgcaaag caacagttaa aagaagcttc acgcagactc accaaggcac tacgacaaga      3000
     agaagacagg tcccaacatc gctatataga acaactatct ccattcagct caaaattccc      3060
     actatggaaa gcccactcaa cactgagccc tccaacagta acggttacgc caataaggac      3120
     tcctgcaggc tgctgggcca gaagcgacaa agacagagcc gacacattcg ctgcccacct      3180
     tgaaaatgtg ttccagccaa atccagtaac aaacgtgcgt aatataagat cgcaaactga      3240
     agacgacctt cctattgccg aaccaattgt atttcgacca tgcgaagtca taaaaattat      3300
     aaaagagcag ctacaaccga gaaaatctcc aggctgcgat ctaataactc caaaaatgct      3360
     tatagaactc ccactatgcg ccgttggtac catatgccag ctgttcaacg cgatgacaag      3420
     actgggctgc ttcccaaaga ggtggaaaaa gtcaatcatc ataatgatac caaaaccagg      3480
     aaaagaccac accctcgcct cctcatacag accgataagt ttactttcct gtctatcaaa      3540
     actctttgaa aaatgccttc tgacccgtat cataccatac ttcagaagac ataatattat      3600
     cccagcacat caattcggct ttcgcgaaaa acatggaact atcgaacagg tgaaccgcat      3660
     aacttcagaa attcgaagtg catttgaaaa tagggaatac tgcactgcgg tatttttgga      3720
     cgtctcccaa gcattcgaca gagtatggct tgacggccta atgcataaaa tcaaaataat      3780
     gctccctaat agcacgcata aactcttgaa gtcatatctt tacaacagaa tatttgtggt      3840
     gagatgcaat acttccatat cagctgaacg caacatcgaa gcaggagttc ctcaagggag      3900
     cgttctcggg ccaactttat acctactcta cacttctgat attcctacga gcagtcaact      3960
     gactatgtcc acgtttgccg acgacaccgc gatcctcagc cgatctagat gtccacaaca      4020
     agcctcagcg caacttgcgg cacatctaga agtagtggag aaatggctct cagactggcg      4080
     aataaaagta aatgagcaaa aatgcaaaca agtaacattt accttaaata gacgaaactg      4140
     cccaaacctt acactaaaca acatcgtgct cccccagtca gatgatgtaa catatcttgg      4200
     cgtacatctc gacagacggc ttacctggcg cacgcatatt gaagctaaac gaactcatct      4260
     aaggctgaag gcaaatagtt tgcattggct gatcaactcc cgctccccac tcagtctgga      4320
     ctacaaggtc cttatctaca atacagtttt gaaaccaatc tggacttatg gctcccagtt      4380
     gtggggcagc gccagcaaca gcaacgtaga aatcgtgcag agagcccaag caaagatcct      4440
     aagaattatc actggggcac cgtggtacgt tcggagtgta aatattcaga gagacttgaa      4500
     tgtactcccc gtccgagatg taatagcgca gcacatgcaa aattactaca caaagctgtc      4560
     aactcatcca aaccacctcg ctagagcatt gacgttggta tgtagccgct cccgccttcg      4620
     tcgtaacgac cttcccatcc agcgataatt attaggacag tctaacataa atacagttta      4680
     acaaattgtt agaataatgt agtactttaa gattttaaca cattttgtta gtctcgtaag      4740
     agaagattca aaataaacaa gcaaagtcta aaaaaaaaaa aaaa                       4784
//
ID   Jockey-7_DK repbase;    DNA;    INV; 1460 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1460
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1344-1344 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1318
FT                 /product="Jockey-7_DK_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="DKIDGITLKTLPPKCIRFLTLVFNAILRLDHFPSQWK
FT                 CAEIIMILKPNKTETELSSYRPISLLTIFSKVFEKILLKRMLPILDELAII
FT                 PEXQFGFRRGHGTTEQCHRVINEIVTAFENKKYCTATFLDVQQAFDRVWHN
FT                 GLLYKIKKWLPAPYYLLLRSYLSKRCFYVQQRSDASSLLLINAGVPQGSVL
FT                 GPVLYTLYTADMPVTNHCTVATYADDTAILATSSSRDEASNLLQCELNLIE
FT                 AWFLRWKIKINSSKSVQITFALRPGNCPNVTLNGSAIPQDTCVKYLGMHLD
FT                 RRLTWKHHIKAKSQQLKLKTLKMSWLLSRKSSATLENKVLLYKAILKPVWT
FT                 YGIQLWGTASNSNIEILQRYQSKTLRQIVNAPFYVSNANIHKDLNIPTIRE
FT                 EIKKYSTKYTARLHNHENNLALGLVDNSLTVRRLKRFHILDLPDR"
XX
SQ   Sequence 1460 BP; 518 A; 313 C; 243 G; 384 T; 2 other;
     ggataagata gacggcatca ctcttaaaac tcttccacca aaatgcatac ggtttctcac        60
     tctggtattc aacgctattc tcaggctaga ccacttccca agtcaatgga aatgtgcaga       120
     aataattatg atcctgaagc caaacaagac agaaactgaa ctatcatctt accgtcccat       180
     tagtctgttg acaatattct cgaaagtatt tgaaaaaata ctactgaaga ggatgttgcc       240
     aattttggac gaacttgcca tcattcctga atwtcaattc ggattcagaa gaggccatgg       300
     gactactgag caatgtcata gggttatcaa tgaaattgtt accgcatttg agaataaaaa       360
     atactgtact gccacatttc ttgatgttca acaagcgttt gatcgtgttt ggcacaatgg       420
     attactctac aagataaaga aatggctacc tgcaccatac tatttattac tgagatccta       480
     tttgtccaaa agatgcttct acgttcagca gagaagtgac gcgtcatcac tacttctcat       540
     aaacgcaggc gttcctcaag gaagtgtact gggaccagtc ctttacactt tatatacggc       600
     agatatgcca gtaaccaacc actgcaccgt tgcaacatac gctgacgata cagccattct       660
     ggcaacaagc tcatctagag atgaagcatc taacctctta caatgtgagc tcaatctgat       720
     tgaagcctgg tttcttcgct ggaaaattaa aatcaactcc tcgaaatctg tccaaataac       780
     atttgcacta aggccaggaa actgcccaaa tgtcacactg aacggctcag caattccaca       840
     agatacctgt gtgaagtatc ttggcatgca cctcgaccgc agattaacat ggaaacacca       900
     cataaaagcg aaaagtcaac agctcaaact gaaaacacta aaaatgtcct ggctgctaag       960
     tcgaaaatca tcagctactt tagaaaacaa agttctcctc tacaaagcta ttttgaaacc      1020
     tgtttggacc tacggtatac agctctgggg aacagctagc aattctaaca ttgaaatcct      1080
     gcagcgctat caatcaaaaa cattgcgtca aattgttaac gctccatttt acgtatcaaa      1140
     cgcaaacatt cacaaagatc taaatattcc aacaataaga gaagaaatta aaaaatatag      1200
     tacgaaatat acagcaagac ttcacaatca cgaaaataat ttagccctag gtctmgtaga      1260
     caatagccta acagtaagaa gactcaaaag atttcacatt cttgatctcc ctgataggta      1320
     aagatatgta aacgataaac tagatttagt agtaggtttc actggacatc tactactcct      1380
     gttatgtaaa tattagttat aaaatttacc tattgtcact agacagattg taaataaaat      1440
     atgaacaaaa aaaaaaaaaa                                                  1460
//
ID   Jockey-7_DMo repbase;    DNA;    INV; 4154 BP.
XX
AC   .
XX
DT   30-SEP-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila mojavensis, consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-4154
RA   Bao W.;
RT   "Non-LTR retrotransposons from the genome of Drosophila
RT   mojavensis.";
RL   Repbase Reports 20(10), 3188-3188 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1247
FT                 /product="Jockey-7_DMo_1p"
FT                 /translation="MSPKVKRTALKIDTGQRPNANKNYYSPLQTLIQPNDE
FT                 IEITDKNEDELEQISSKNKVYVPPITVLKCTVDQIHNICKQINCTKYSIKK
FT                 ISIGIKLHCVDINDHKAACSVMHGKFEYFSYADKNDRPYKALLLGLDKMDP
FT                 SSLKNELIGLGLNCLDVKLVQRKRPNNTVLILYVVFFTKKSITLNELRKNH
FT                 SVINYVRVKWEYQKKSSHQITQCYNCQMFGHGSNRCAVKSYCSNCAGPHKT
FT                 AECPDGSTVKCANCNGSHKSNDANCPSRISYLNLRSQYRSHQVRPNRTNIS
FT                 LPPQLDYSNAFPNTLSKSNFHSSARWVNHNGNHTPNVNKDLFSLEEIKSLT
FT                 FELIKNLRNCKTKADQFELITSLACKFVHNV"
FT   CDS           1216..3900
FT                 /product="Jockey-7_DMo_2p"
FT                 /translation="HHWHASSYIMFDHLSIITWNARGVKNKKDELFAFLNR
FT                 ENVDICLLTESWLNSSLSIKNNNYFCYRCDRSSRRGGGVAIIIKKSIRHTL
FT                 LPLPNTNLIESIGINITINGTTCTSLFCCYFGGGRADPLQKQIFTNDLRLL
FT                 TRTPGNLVLGGDFNSRHRLWGCNRANVWGSLLYNFSLSRGLTVHFPNEHSY
FT                 VPASARYQSSTLDLFVSNNCQLLSNTIAINDLGSDHLPVQTILHSNYTKVK
FT                 KFFYDIKNANWTVFGRTINRLLPDCDSFPASSQDDIDNLINLFSLVIVAAK
FT                 EHSIPKREIKSSPKALPPNIISLIKLRNRHRRNWLRRRNICDLTLVRWFSQ
FT                 LVNIELSKLRNENWNNLLSSLEKNSSPFWKLSKVIKKKYSGIPTLTHNQQN
FT                 FVSADKKVELLASLFALNHSHSANLGDPSTSSEVNSFTGLLDSLPVDHDES
FT                 YLTNVHEVSSILKELKSKKTPGLDNIENVCLKALPRKGVKFLSFLINECLR
FT                 LGYFPHKWKISKVIPILKANKPPECPTSYRPISLLSSVSKILEKVIKKRLV
FT                 DFTESNNVLSPLQYGFRREHNTIQPLGRIKKIVKANFSSSKSTGMVLLDIK
FT                 AAFDSVWHEGLVYKMNLLHFPLQIIKIIRSFLKDRFFTVYIGDAHSRASYI
FT                 PAGCPQGSCLSPILYNIYTSDFPALSGCTASIFADDTAILCSGKLATDISD
FT                 SLQAAFNVLVAYFTKWKILINPEKTQAIYFTRNRKNNYIPLHPINLSQVDI
FT                 NWENNVKYLGVLLDKKLTFSDHVQFIIKKTNILIKVLYPFINRNSRLSLEN
FT                 KMYLFRSIFQSTIFYGAPVWADIAKTHICKIQVLQNKILKRIFNLPWHYPT
FT                 AELHYIARVELASDRLTKLHTNFVTRCSYSSYLHLQNSNEPL"
XX
SQ   Sequence 4154 BP; 1403 A; 881 C; 671 G; 1199 T; 0 other;
     cagtcttgtg ctagctctct tactgtacgc acgtacctaa ggattagctt gtcaaagaaa        60
     ataaaaataa aaacaagtcc acgattaaaa gaacaaaacg aactttatct ccaggggaca       120
     ccgttatgtc gcccaaagta aagcgcactg cgctaaaaat agacactggt cagcgaccaa       180
     acgccaacaa aaactactac tcgccgttgc aaacactaat acaaccaaac gacgagatcg       240
     aaatcactga taagaatgaa gatgagctcg agcaaatcag ttctaaaaac aaagtgtatg       300
     ttcccccaat aacggtcctc aaatgcacag tggatcaaat tcataatatc tgcaaacaaa       360
     ttaattgcac taaatattcc atcaaaaaga tttcaattgg aatcaagctc cactgcgtcg       420
     atataaatga ccataaagcc gcgtgcagtg taatgcatgg aaaatttgaa tatttctcct       480
     acgccgataa aaatgacagg ccatacaaag cactgctgtt ggggctagat aaaatggatc       540
     cctcttcatt aaaaaatgag cttatcggtc ttggtctaaa ctgtctagat gttaaactgg       600
     ttcagcgaaa aagaccaaac aacactgtcc taattctata cgtggtcttc ttcaccaaaa       660
     aatccatcac actcaatgag cttagaaaaa accactcagt tatcaactat gtaagagtga       720
     agtgggagta tcaaaagaaa tccagtcacc aaataactca atgctacaac tgccaaatgt       780
     ttggtcatgg ctcaaaccgc tgcgccgtga agtcgtattg ctctaactgc gctggacctc       840
     acaaaaccgc tgaatgtccg gatggatcta ctgttaaatg tgccaactgt aatggttcac       900
     ataaatccaa cgacgctaac tgccctagta ggattagtta cctaaatcta agatctcaat       960
     atcggtcgca tcaagtaaga cccaatcgta ctaatatttc tttgccacca cagcttgatt      1020
     actccaatgc gttccctaat acgctaagta aatcaaattt tcattcaagc gccagatggg      1080
     ttaaccataa tggcaatcac actcctaatg tcaacaagga tcttttctct ttggaggaga      1140
     tcaagtccct tacatttgag cttataaaaa acttaagaaa ctgcaagacc aaggcagacc      1200
     aattcgaatt aataacatca ttggcatgca agttcgtaca taatgtttga tcatctctca      1260
     attataactt ggaacgctag aggcgttaaa aataagaaag atgagctttt tgctttctta      1320
     aatagagaaa atgtagatat ctgtctacta actgaatcct ggcttaacag ctcattatca      1380
     attaaaaaca ataactactt ttgttacaga tgtgacagat ctagtagaag aggaggaggg      1440
     gttgccatta ttattaaaaa atctattcgc cataccctgc ttcccctccc taacacaaat      1500
     ttaatcgaat ctattggcat aaatattacc attaacggaa ctacctgcac ttcactgttt      1560
     tgctgttatt ttggtggtgg tcgagcggac ccccttcaaa aacaaatctt tacaaatgat      1620
     ttgcgactat taacccgcac tcctggaaac ttagtgttag gaggagattt taatagccga      1680
     cacaggctct ggggctgtaa ccgagcaaat gtctggggat cattgctgta caacttctca      1740
     ttatctcgtg gacttacagt tcatttccct aatgaacact cttatgtacc agcgagtgct      1800
     agatatcaat cgtctacgct agacttattt gtttcaaaca actgtcaact gttatccaat      1860
     actatagcaa taaatgatct aggctcggat catctccctg tccaaacaat actgcactca      1920
     aattacacta aagttaaaaa attcttctat gatatcaaaa acgcaaactg gactgtgttt      1980
     ggtagaacaa tcaaccgact attaccagac tgcgactcct tccccgctag ttcgcaggac      2040
     gacatagaca atttaataaa tttgtttagc ttagtgatcg ttgcagctaa agagcacagt      2100
     attcctaaaa gagaaatcaa atcttctccc aaagctctac ctcctaatat aatctctcta      2160
     ataaaactta gaaacaggca ccgtcgaaat tggttgagac gcagaaatat atgtgatctg      2220
     actctagtta gatggttcag ccaactagtt aatattgaat tatccaaact cagaaacgag      2280
     aactggaata atctcttatc ctcgctagaa aaaaattctt cccccttttg gaagctttca      2340
     aaagtcatca agaagaaata cagtggaata cccacactca cacacaatca gcaaaatttc      2400
     gtaagtgccg ataagaaagt cgaactatta gcatcattgt tcgccttgaa ccattcgcac      2460
     tcagctaacc tcggtgatcc atccactagc tctgaggtca acagtttcac ggggttattg      2520
     gactccctgc ctgttgacca cgacgaatca tacctgacaa atgtccatga ggtatcttcg      2580
     attttaaaag agcttaaatc caagaagact ccaggtctgg ataacattga aaatgtgtgc      2640
     ctaaaagccc tccctcgtaa aggagtcaaa tttctttcat tccttattaa tgagtgccta      2700
     cgcctcggat attttccaca taaatggaag atctctaaag tcattcccat cttaaaggca      2760
     aacaagcctc ctgaatgccc tacatcatat agaccaataa gtctgctttc atcagtcagt      2820
     aaaatcctag agaaagtcat taagaaaaga ttagttgact ttactgaaag taataatgtc      2880
     ctttcgcctc ttcagtatgg cttccgtcgt gaacacaata ccattcaacc tctgggtaga      2940
     attaaaaaaa ttgtcaaggc caattttagt agttccaaat ctacgggtat ggtcttgcta      3000
     gacattaaag cggcctttga ctctgtatgg catgaaggac ttgtgtacaa aatgaacctc      3060
     ttacatttcc cattgcagat tattaaaata atacgcagtt tcttgaaaga cagattcttt      3120
     acagtgtaca taggcgatgc tcattcacgt gcaagttata ttcctgcagg ttgcccgcaa      3180
     ggatcctgcc tctccccaat attatataat atctatacat ccgacttccc tgctttaagt      3240
     ggatgcacgg catccatttt cgctgatgat acggcaatcc tttgctctgg taaactggca      3300
     accgatatct cagattctct ccaagcagcc tttaacgttc tagttgcgta ctttactaag      3360
     tggaaaattc ttataaatcc ggaaaaaacc caagcaatat actttacaag aaataggaaa      3420
     aataattata ttcctctaca tcctattaat ctaagccaag tagacattaa ctgggagaac      3480
     aatgttaaat atcttggtgt cttgttagac aaaaaattaa ctttttctga tcacgtccaa      3540
     tttattatta aaaaaacaaa tatattaatt aaagtgttat atccattcat aaataggaac      3600
     tctcgactaa gtttagaaaa taaaatgtac ctatttagat caattttcca gtccacaatt      3660
     ttttacgggg ctccggtttg ggctgatata gctaagactc atatctgtaa aatccaagtc      3720
     ttgcaaaaca aaatattaaa aagaatattt aatctcccgt ggcattaccc tactgcggag      3780
     ctacactata ttgccagagt cgaactagcg tcagatagat tgactaagtt gcacacaaat      3840
     tttgtaaccc gttgtagtta ttcatcttac ctacatttac aaaacagtaa tgaaccctta      3900
     taagcaataa gcaattagtc ttaattttaa ttttaagttt ttagtcttta agtcaattta      3960
     cgaggttttt gtttatactt ttccttcaaa aataatgttt ctaaatgtaa ttaaatttcc      4020
     tgaacaaata atattaacat ttaagcagaa aaggtttatg gcctgtactc ttaactttca      4080
     catgtaaatc actcacactt gtgtaaatac tgatataaaa taaagtgttc cttataaata      4140
     aataaataaa taaa                                                        4154
//
ID   Jockey-7_DPer repbase;    DNA;    INV; 3703 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3703
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1657-1657 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..863
FT                 /product="Jockey-7_DPer_1p"
FT                 /translation="MAKGVLCHSYRLKEERSYRVVIKNLHHSTXTDYIKQD
FT                 LMAKGHLARFTRNPLNRATKKQLSLFFVDLEPNENNKEIFKXSDLRRQKIT
FT                 VEQPQRKQEISQCHRCQEXEHTKXYCNKKFVCVKCGGPHATIECSKPRDVE
FT                 PKCANCLGSHTANYRGCRVYQQLLLKLYPQPPQSNWENTHQAHPRGKNTSG
FT                 RTQTNSRSLSRSSRQRDMPRNDMPISQPKSQENHISCAEVARGAL"
FT   CDS           join(652..1863,2047..3552)
FT                 /product="Jockey-7_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NCTHNHHSQIGKTLIRRILGERILPGAPRQTLARSRE
FT                 AADRGTCHATICPFPSQKVRKIIYLVLKSLEEPSSLSRTSCSSQNALPYRY
FT                 LECVGHSQQKPRTLSETHFCSRTTFKLIGYELYTANHPSDSFRGGSAILIR
FT                 SSLKHFPINPITDGQIQAANMVLSTSLGETTISAIYCPPATLWTSSQFRSL
FT                 LSSFGPKYIAAGDWNAKHQWWGNPRSCPRGREIHDYIVSSGANILATGSAT
FT                 HYPYDSNRSPSALDFAIYKGVPHRFLHIQANFDLPSDHLPLLIEMHLSPVD
FT                 YPTKQKLLHSRANIEIFQTHLEDHIRLNERFESPEDIDAAVRSLNSLIQEA
FT                 ALSAEPPTSEERSTRPAASPDPHIENLVRIKRRLRKAFIRTHDPDTKAQMH
FT                 RAGRNLKKPRKFRDQIHSSRCSTSRSHASTLLVLRSAPTDVDTNQASFTSE
FT                 VQAEIKALVNNKAPGHDLIDARIAKLLPRKGVMFLVALYNAILRIGHFPTQ
FT                 WKCAMIVMILKPGKPTSALESYRPISLLPVFSKIFERIFLSRMVAESCVKE
FT                 AIPQHQFGFRRQHGTPEQVHRVAQHILNAYETKQYCSGVFLDVKQAFDKVW
FT                 HKGLLYKLKILLPAPQYSVIKSFLRERTFIVTIKDAISDIKIIRAGVPQGS
FT                 VLGPILYTLFTRDMPLPHVNPSNFLVATYADDTAILSSSTCYRAVAEQLQI
FT                 YLESVEKWAKKWNITINETKSVNVNFTLRSKHPPDLTFNGNIIPRKSSHCY
FT                 LGVHFDKSLTWGPHIRATVIKCQNKLKKLHWLMNSKSKLPLRNKVLLYKAT
FT                 IIPIWTYAIQVWGCAAKTHLNKIRVMQAKALRAMTGAPWFVRTTMLERDLL
FT                 IPKVGDQINHHSSRYNDRLINHPNETARGLLHPQIPRRLKRLHPSNIKNRK
FT                 IC"
XX
SQ   Sequence 3703 BP; 1208 A; 970 C; 705 G; 807 T; 13 other;
     aatcatcata cccggggtaa acgacatcac aatgttctgg tcaatgttgg atacgttggc        60
     aagccccgaa aattaccgta taaaaacaak cacwggagga caatattaga ctcctatgca       120
     acgactcaac cacttaccgc aaaattgcct ccgcgttgat ggctaaaggc gttctctgtc       180
     atagctaccg gttgaaagaa gaacggtcat atagagtggt aatcaaaaat cttcaccact       240
     ccaccmcaac tgattatatt aagcaagatc tcatggccaa agggcatcta gcmcgattca       300
     cccgcaatcc tcttaacaga gcgaccaaga agcagctcag cttatttttc gtggacttag       360
     agccaaatga aaataataaa gagatcttca aaktatcaga cctccgcaga caaaagataa       420
     ctgttgagca gccacaacgc aaacaggaga tatcacagtg tcaccgwtgt caagaatwcg       480
     aacacactaa aakatactgc aacaaaaaat ttgtttgtgt taaatgcggg ggtccgcatg       540
     ccaccataga atgctcaaag ccacgagacg tcgagcccaa gtgtgccaac tgtcttggct       600
     cccacactgc caattataga ggctgtaggg tctaccaaca gcttctattg aaattgtacc       660
     cacaaccacc acagtcaaat tgggaaaaca ctcatcaggc gcatcctagg ggaaagaata       720
     cttccgggcg cacccagaca aactctcgct cgctctcgag aagcagcaga cagagggaca       780
     tgccacgcaa cgatatgccc atttcccagc caaaaagtca ggaaaatcat atatcttgtg       840
     ctgaagtcgc tagaggagcc ctctagcctc tctagaacta gctgcagctc tcaaaatgcc       900
     ttaccgtata ggtatttgga atgcgtcggg catagccaac aaaagcctag aactctctcg       960
     gaaacgcact tctgcagcag aacaacattc aaactaatag gatatgaact ctacactgca      1020
     aatcatccct ccgatagttt cagaggagga tctgctatcc tcatccgcag cagcctcaag      1080
     cacttcccaa tcaaccccat tacagatggc caaattcaag ccgctaacat ggtgctaagc      1140
     acctctctag gagaaacaac tatctcggct atctactgtc ctccngctac cttatggaca      1200
     agttctcagt tccgctcttt attatctagt tttgggccaa aatacattgc agctggggac      1260
     tggaatgcga agcaccaatg gtggggaaac cctcgctcct gccctagagg tcgcgaaatc      1320
     cacgactata tagtctcaag tggagccaac attcttgcca ctggctctgc aacccactac      1380
     ccatacgact ccaacagatc gcctagtgcc ctggatttcg ctatctacaa aggcgttccc      1440
     catagattcc tgcacataca agcgaacttc gaccttccct ccgatcacct accgcttctc      1500
     atagaaatgc acttatcccc tgtcgactac cctactaaac agaagctcct gcacagtcga      1560
     gcaaacattg agatttttca aacccatttg gaagatcaca tccgacttaa cgagagattc      1620
     gagtctccag aagacattga cgcggctgta cgctcgctta atagcctcat ccaggaagca      1680
     gctctctccg cagaaccacc cacgtccgag gagcgctcga cccgacctgc tgcatcacct      1740
     gaccctcaca tcgaaaacct tgtgcgtatc aagagaagac taaggaaagc tttcatwaga      1800
     actcacgacc cagacactaa agctcagatg cacagagcgg gcagaaactt aaaaaagcct      1860
     cgctgagaaa agcagcaaac acttcgacga aatgctaaaa agagccgata caactgaaag      1920
     tagccaggtc aatctctgga aactcacccg tggcatcaag aggcagccac tgtgcagctt      1980
     tccattaaga aacgacaacg gtacntgggt naagtctgac ttggaaaaag cagaagcgtt      2040
     cgctagaaat ttagagacca gattcactcc agccgatgta gcacctcaag atcacacgcg      2100
     agcactctcc tggtacttag aagcgcccct acagatgtcg ataccaacca agccagtttc      2160
     acctctgaag tccaagcgga aataaaagct cttgtgaaca acaaagctcc tgggcacgat      2220
     ttaatagatg cccgcatcgc aaaactgctt ccacgcaagg gagttatgtt tctagttgca      2280
     ctttacaacg ccatccttcg catcggccac ttccccaccc aatggaagtg tgcaatgatt      2340
     gtgatgatac taaagccagg taaaccaacg tcagccctag agtcatacag accaataagc      2400
     ctactgccag ttttctccaa gatattcgaa agaatattct tgagcagaat ggtggcagaa      2460
     agctgcgtca aggaagctat tccacagcac caattcggtt tcagaagaca gcacgggacc      2520
     ccggaacaag tacacagagt ggctcaacac atcctcaacg cttatgaaac taagcaatac      2580
     tgttcagggg tgtttctcga cgtgaaacaa gctttcgaca aagtctggca caagggactt      2640
     ttatataaac taaagattct actacccgcc ccccagtatt cagtcataaa gtcatttttg      2700
     agagaaagaa cgtttattgt cacaatcaag gacgctattt cagacataaa aattatcaga      2760
     gctggagttc cacaaggcag cgttcttggg ccaatcctgt acacattgtt tacacgcgac      2820
     atgccgttac cgcacgtcaa cccaagcaac ttcctggtcg ccacttacgc tgacgatact      2880
     gctattcttt catcatccac ctgctacaga gccgttgctg aacaacttca aatctacctc      2940
     gaatccgtgg aaaaatgggc aaaaaaatgg aacatcacaa ttaacgaaac aaagtcagtt      3000
     aacgtaaatt ttactttaag aagcaagcac ccaccagacc taaccttcaa cggaaatata      3060
     attccgcgca agagcagtca ctgctacctc ggtgtccact tcgataaaag cctaacttgg      3120
     ggaccacata tcagagctac agtcatcaaa tgtcaaaaca aactcaaaaa gttgcactgg      3180
     ctcatgaact caaaaagtaa gcttccccta cgcaataaag tcttattgta caaggcaacg      3240
     ataatcccta tatggacata cgccattcaa gtctggggat gtgcagcgaa gacgcatctg      3300
     aataaaatca gagtcatgca agcgaaggct ctaagggcga tgacaggtgc cccgtggttt      3360
     gttcggacca caatgctgga aagagatctc ctcatcccaa aagttggaga tcaaattaac      3420
     catcacagca gtcgatacaa cgataggctc attaaccatc caaatgaaac agctagagga      3480
     ttactgcacc cccaaatccc acgcagactc aaacgtctcc acccatcgaa cataaaaaat      3540
     agaaaaattt gctgaataac acatcattaa aatgtatata taaacctaat cattaaactc      3600
     ttataatatg tagtaagcca atgtaaatat cactaawatt agatcatagt ttaagtaaag      3660
     ctgatttcta ataaaataaa aaaaaaaaaa aaaaaaaaaa aaa                        3703
//
ID   Jockey-7_DRh repbase;    DNA;    INV; 4669 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4669
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1684-1684 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The consensus is ~95.5% identical to
CC   that of Jockey-7_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1878..4541
FT                 /product="Jockey-7_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAPLRISLWNANGVSQRKLELTQFLNNNHIDVMLLAE
FT                 THLTNKYNFQIRDYFFYNTNHPDGKAHGGTGILIRNRIKHCFHNSFATNYM
FT                 QATSIDVQMDHRSLKLAAVYCPPRFTISESQFMDYFNSLSEQFIVAGDFNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKASNKLDCVSPGTPTYWPTDPRKLPDLID
FT                 FAVTKNIPRNLISANSLSDLSSDHSPVLLQLNLHPVAVDKPFRLTTNKTNW
FT                 LKYKKYVSSHIELNPRLNDEADINLSTNTLESVLVAAARMSTPQTQKTSYN
FT                 HRYTNVEIEQLVLAKRRSRRDWQSNRSPSAKQRLKDATRRLSAALRHEEER
FT                 SQKHYIEQLSPMSSKFPLWRAHSSLXAPLESAMPIRTSTGNWARSDGERAD
FT                 RFAEHLQNVFQPNTASNGISLPATSDIDTSTYEPIVFRPHELLKIINEQLN
FT                 PKKSPGCDLISPKMIIELPFCAVRAICQLFNAITRHGHFPERWKKSIIIMI
FT                 PKPGKDRTIASSYRPISLLTCLSKLFEKCFLAHITPYLRTHNKIPTHQFGF
FT                 REKHGTIEQVNRITSEIRNAFEQREYCTAIFLDVSQAFDRVWLEGLMHKIT
FT                 EMLPTNTHKLLKSYLYNRKFSVRCNAAMSDDYIIRAGVPQGSVLGPTLYLI
FT                 YTADIPTSXQLTTSTFADDTAILSRSRCPKQATAQLAKHLVAVEKWLSDWR
FT                 IKVNEQKCKHVTFTLNRQDCPPLTLNNTVVPIANEVTYLGVHLDRRLTWRS
FT                 HIEAKRTHLKLKANSLHWLINSRSPLSLDYKVLLYNTVLKPIWMYGSQLWG
FT                 NASNSSVDIMQRTQSKILRTITGAPWYVRNVNIHRDLHISLVREEIAQITT
FT                 KYYNRLSVHPNHLARALTRVSSSSRLRRNDLPIQR"
FT   CDS           join(178..1275,1197..1871)
FT                 /product="Jockey-7_DRh_1p"
FT                 /translation="MSEFDTHTVLQRQQDERRLSLQRNNAYHSIVSMQDNA
FT                 TANPTKTNQPRSITPSPSNELNPTSQGRARSCSPALLLDKTPYPSLMPTCL
FT                 ATVTSTVTSLATATATSTTTTIVSTARAIPSTVTTKSAVQANNAEPYTSAL
FT                 SSKQCSAVQTGMDRYIQIKRKLSPQNSRLGNFAKITRGTSKQSTIEKPIEA
FT                 NRFAILADKSDDIPPEYIVGDNKKPKPPXIYIREKSSNALVNSILNLIGPD
FT                 NFHIIPLTKGNIHETKVQTNTEVNYKILSKYLNDNNKNFYTYQLKSSKGQQ
FT                 VVLKGIEPEVTPAEVTGALKEKDFNVKNVINILNRERKPQPLFKVELEPET
FT                 KSKPLKKMKCIQFLLSSSYYTAETRNQIQASEKNEVHPIFTLQFLLHRRIT
FT                 VEEPHKRNGPVQCNNCQEYGHTRSYCTLRPVCVACGDLHDSHKCPKNKEEP
FT                 SSKKCGNCGGNHTANYRGCPVYKELKSRTHQRVTTARSHITPMKSTRDVFP
FT                 PTAVKSSANNEFTDKPESFATALKMGLKSTAPTKPRSSVSPHQPGEQSTNK
FT                 IETMICNLQQSMMDFMSFMQTTMQDLMRNQNVLIELLVAQKQTK"
XX
SQ   Sequence 4669 BP; 1604 A; 1161 C; 835 G; 1057 T; 12 other;
     tcgcgaamgt cggcgagtgc wgacgtgttt ttcscgtctt cttatcgtca amgaaaattt        60
     aaataaawgc agtgcaagct mwaaacaaca acacacagtg ggcgaaaaga cgcttagtgc       120
     gatgaacttc gtactttttg tgtaaataaa caagaagaaa atctaaaaca ttaagctatg       180
     agtgaattcg acactcatac ggtgctccaa cgtcagcaag acgagcgtcg gctctctctg       240
     caacgtaaca acgcatacca ttcaatcgtg tcaatgcaag acaacgcgac cgcaaaccca       300
     acaaaaacta accaaccgcg atcaataacc ccaagcccga gtaatgaact caatccaaca       360
     tcgcaaggca gggcgcgctc ttgctctcca gcgctcttgt tggataaaac cccataccct       420
     tccctnatgc caacctgctt agccacggtc accagtacag tgacgtcact agcaactgca       480
     acggcaactt ctacaacaac tacaatagta tcgactgctc gcgcaatacc atctactgta       540
     acaacgaaat ctgctgtgca agcaaataat gcagaacctt acaccagcgc gctctcttca       600
     aaacaatgtt cggccgtaca gactggtatg gatcggtaca tacaaataaa acgtaagctc       660
     agcccgcaga actctagact tggtaatttt gctaaaataa ctcgcggcac ctcaaaacaa       720
     tctacaatag agaagcccat agaagcaaac agatttgcta ttttggcaga taaatccgat       780
     gatatacctc ctgaatacat cgtaggggac aataaaaagc ctaagccgcc gncgatttac       840
     attcgagaga aaagttctaa tgctctcgta aactcgatac tgaatctaat cggaccagac       900
     aatttccaca taattccatt aacaaaggga aatattcacg aaacaaaagt tcagactaat       960
     acggaagtaa actacaaaat tttgtcgaag tatttaaacg acaataataa aaacttctac      1020
     acgtaccaat taaaaagcag taaaggccag caagtagtac ttaaaggtat tgaaccggaa      1080
     gtaacaccag ctgaagttac aggcgcactg aaggagaaag attttaatgt aaaaaatgtt      1140
     attaacattt tgaatagaga aagaaagcct caacctcttt tcaaggtaga acttgaaccc      1200
     gaaaccaaat ccaagcctct gaaaaaaatg aagtgcatcc aatttttact ctccagttcc      1260
     tactacaccg cagaataacc gtagaagagc cgcataaaag aaatgggccg gtgcagtgta      1320
     ataattgtca ggaatatggc cacacaaggt cttattgcac gcttcgtcca gtatgcgttg      1380
     cttgtggaga ccttcatgac tcccacaaat gcccaaaaaa taaagaggaa cccagcagca      1440
     aaaagtgtgg aaactgtgga ggtaaccata cggctaacta caggggctgt ccagtctaca      1500
     aggaactgaa aagtcgtaca caccaaagag tgaccactgc tcgctcacat ataacaccta      1560
     tgaaatctac gcgtgatgtc ttccccccta cagccgttaa atcttcagct aataatgagt      1620
     tcaccgacaa acccgaaagc tttgcaactg ctctaaaaat gggtctgaaa agtaccgctc      1680
     ccaccaagcc acgatcatca gtttcccctc atcaaccagg agaacagtct acgaacaaaa      1740
     ttgaaacaat gatatgtaat cttcaacaaa gtatgatgga tttcatgtca ttcatgcaga      1800
     caactatgca agatcttatg cgaaaccaga acgttttgat tgagctgctt gttgctcaaa      1860
     aacagactaa gtaatcaatg gctccactcc gtatatcact gtggaacgcc aacggcgtct      1920
     cacagcgcaa actcgagtta actcaattcc ttaataataa ccatatcgat gtaatgctac      1980
     tcgcagaaac tcatcttaca aataaataca atttccaaat tcgagactac ttcttctaca      2040
     acacgaatca cccagacggg aaagcacacg gaggcactgg gattctgatt agaaatcgca      2100
     ttaagcactg cttccacaat agcttcgcca ctaactacat gcaagctaca tctatagatg      2160
     tacagatgga tcaccgwtct ttaaagcttg ccgccgtata ctgtcctcct cggtttacaa      2220
     tatccgaatc ccaattcatg gactatttca actctctgag cgaacaattt atagtagcag      2280
     gagactttaa tgccaagcat acgcactggg gatctcgact tgtgactcca aagggaaggc      2340
     agttgtacaa tgcaataata aaagcaagca acaagctaga ctgtgtgtca cctgggacac      2400
     ctacatattg gccaacagat cccagaaaac tgccagactt gatagatttt gcagtcacaa      2460
     aaaacattcc acgcaacctg ataagcgcca actccttatc agatctatcg tctgatcact      2520
     cgcctgtact ccttcaacta aatctacatc cagttgcggt agataaacca ttcagactaa      2580
     caacgaataa aaccaattgg cttaagtaca aaaaatatgt aagttcgcat attgagttga      2640
     atccacgttt gaatgacgaa gctgatatca acttatccac aaacactctt gaatccgtct      2700
     tggtcgcagc agctcgcatg tcaactccac aaacgcaaaa aacatcgtac aatcatagat      2760
     acacgaacgt tgaaatagaa cagcttgttc tagcaaagcg acgctcacgg cgagactggc      2820
     aatccaacag atcaccatct gcaaaacaaa ggttaaaaga cgctacacgg aggctctcag      2880
     ctgcattacg tcatgaagaa gaaaggtccc aaaaacatta catagagcag ttatccccaa      2940
     tgagctccaa gttcccactt tggagagcac actcatcact cwgcgcacca ttagaatctg      3000
     caatgccaat aaggacatcc acaggcaact gggcgcgcag cgacggagaa agagccgaca      3060
     gatttgcaga acatcttcaa aatgtatttc agcccaatac agcatcaaac gggatctcac      3120
     tgccagcaac atcagatatc gacacatcta cgtatgaacc aattgtattt aggccacatg      3180
     agttactcaa aatcataaat gaacaactca acccaaaaaa atctccagga tgcgacctaa      3240
     tatcaccaaa aatgattatt gaacttcctt tctgtgcagt tcgagctatt tgccaactct      3300
     tcaatgcaat aacgagacat ggacacttcc cagagagatg gaaaaagtcg atcatcataa      3360
     tgataccaaa acctggcaaa gaccgcacaa ttgcttcatc atatagacca attagtttac      3420
     taacgtgtct atcaaaactc ttcgaaaaat gcttcttggc acatattacc ccatatctca      3480
     gaacacacaa caaaatcccg actcatcaat tcggttttcg agaaaaacat ggaaccatcg      3540
     agcaagtcaa ccgcataact tcagaaatcc gaaatgcatt cgaacaaagg gagtactgca      3600
     ctgcgatatt tctggacgta tcacaagctt tcgacagagt atggttagaa ggtttaatgc      3660
     acaaaataac agaaatgctc ccaaccaaca ctcacaaact tctgaagtca tacctttaca      3720
     acaggaaatt ctcagtaaga tgtaatgctg ccatgtccga tgattacatc atcagagccg      3780
     gagttcctca aggcagcgtg ctcggaccaa cactctacct tatctacact gcggacatcc      3840
     caacgagcak gcaactaacc acatccactt ttgctgatga cacagcgatc ctaagccgct      3900
     cgagatgccc caagcaagca acggcgcaac ttgctaaaca cctggtggca gtggagaaat      3960
     ggctatccga ctggcgaatc aaagttaacg aacaaaaatg caaacacgta acgttcacac      4020
     ttaacaggca agactgccct ccacttactc taaacaacac agtggttccg atagcaaatg      4080
     aagtaacata tcttggcgta cacctcgata gacgtcttac ttggcgcagc cacattgaag      4140
     ccaaaagaac acatttaaag ctcaaagcca acagcctcca ctggcttatc aatagccgct      4200
     cgccccttag cctggactat aaggtacttc tatacaacac cgttttgaaa ccaatctgga      4260
     tgtacggctc tcagttgtgg gggaatgcca gtaacagcag tgtggatata atgcaaagaa      4320
     ctcaatcaaa aattctcaga accatcaccg gggcaccgtg gtacgttcgg aatgtaaaca      4380
     ttcacaggga ccttcacata tcactcgtca gagaagagat agcacaaatc acaacaaagt      4440
     actacaacag gctatcagta catccaaatc atctcgcgag agccctcacg cgagtttcca      4500
     gcagttctcg tcttcgccgc aacgaccttc caatccagcg ctaattatta ggaccatgta      4560
     gtctctattc agttaaaatt aaactgttag ataatgtatt attttaagat ttgcaacctt      4620
     attgttagac tcataaagag aagatccaat aaaaaaaaac caagcttta                  4669
//
ID   Jockey-7_DTa repbase;    DNA;    INV; 5354 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   19-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5354
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5929-5929 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           220..1821
FT                 /product="Jockey-7_DTa_1p"
FT                 /translation="MPYTKTAKKNKINLQPETPDKPTLECIPKLNSTMTTS
FT                 FAHPTNSQDAAIADNNNSTGGDPTHVSGEEMDFESGNTKRRHTSEDDEYEE
FT                 YECDSSSDSSTDCEEEEDEQSNLSNSELQGLLQEMKLLREENKRLQAIIAK
FT                 NAKSDGNEKNNMYPPLETSGSTKYQKVQNKKTTNKKASTTSNAAQPKSTSE
FT                 GENNAKNLPVIVLYNENPSKLKDIISHKYSLNILNKNVTHIKLYNIETLEK
FT                 TKTIFAKNKMNFFTYTPKEMKPHNIVIKKIPPTVFSKEEVKSALQEATPDF
FT                 EILSVEPFKTKHWHIVIKKSKDISNIFKIRYLLNCKVHIESYKPHPKEIKQ
FT                 CRKCQRFHHVASNCNMPYRCVKCIETHAPGQCKIKKPENEDEKLENVTQCV
FT                 NCNGRHTANARICPTRKKYIKEAIDRRNRQSHTLYKKINPPTYNKTQNQIK
FT                 EGVSYSAALRTNYHHNNETTTIKKTPINKTGNTNKFTFEDLNNDSMKLFGK
FT                 NIVDCIEIMQETIQKYPSNHNQNTKKQILLDFIVKISQ"
FT   CDS           1800..4928
FT                 /product="Jockey-7_DTa_2p"
FT                 /translation="FYRKNITMKFKCIFQNVNGLRQLYKRAELEKYILKHR
FT                 PNAMLIAEHRLSDTHNPNLSQYQFTRQRPNNQPETNNRYSKASVAIATKNG
FT                 MKYQQLNIPATINIEAVAIQICYLNRRQERHSIVLVTLYKRPGTLLHTGDL
FT                 NNIINHINEQTNNSPIIIGCDLNAKHPSWHIPNHNPRHLNSNGQLLYDWLT
FT                 NQPNLTLLSTIEPTRPNQIIDSSIDFFICSNELSIETGNICKITKDFPSDH
FT                 FGVEIKLNLEPFVLDEIDPKKIYNFKQMDSLIWNRTILTNLSPVPNSLNQT
FT                 SEQIDNHIIKLNQAIDKALNSTEAIPIIKIDPKKPNKIVRPSPTCLQLIKH
FT                 CRYLRRYLFRHIFSLSSHEKQYINNEIKLLKVEINNLLKISHINYIQHTIQ
FT                 HLKPRNISLKTLKLTQPNHRNQNIILTPVEIQTIDINTPAILKTEFDKING
FT                 LAWSFERIHKQNDSLSTANPQHQPHANLIQSTVRETFSNENSPSITFNENI
FT                 TADGNWQNAEEHGFTNSNQLFELIKSGNAKKTLGPDGTSNYLLKRMNIPVL
FT                 SHIARIFNHCLNISYFPSSWKCSKVIAIPKPKANHESLLGFRPISILSAIS
FT                 QLLEKILALKLTEHLENNTILQPFQFGFRKNMSISHSLAAANNFIYSNISN
FT                 KRAVIACALDFEKAFDTVWTNALIYKMYHLHNFNQHLTKIIFNYLTNRSFY
FT                 VISSDGTERSLIREIVAGVPQGSTLAPILYNIYLADLPEFQRHLNSTSRAI
FT                 IQPFVYADDILLLASGARISNAETDLNEYLDQLSDYFNKWRLKLNTSKCES
FT                 TILKGHVIRNLYPNARNFQPKIYVNRNTEIKNVKEIKYLGVYYDEKLSFKP
FT                 NTQYLLKKAKIQIAQIHKAFGTLGTNASHSNKELIKIRSLIYKKLIQPILT
FT                 YGHIAWFNLKSSEMENLRLFERKILRRALGSSARNSITNHFINNSNLYQLT
FT                 QTKRIDTQIFKIIEQFVENNRNNSNHLISNSVAQKQPPINFSIHNLAINHI
FT                 NYLKEIGIIYNTNNKLIFYHRRHDSINPNNLVYNTNQ"
XX
SQ   Sequence 5354 BP; 2234 A; 1243 C; 700 G; 1177 T; 0 other;
     tctcggaaaa acttgctctc ttagaattct aagaaaaaac gcaaattccg agaaaagtga        60
     aaacacagat agtgactgaa ttaaatcaga tagtgactga atcaaaatcg aaagttcaaa       120
     gtggatccct cagtaatcga aacatttaaa caacaacttg ccaacgcaaa gataagcaaa       180
     aaatgtcaac cccataaagt gttctttaaa caaaaaaaca tgccatacac taaaactgca       240
     aaaaaaaaca aaattaactt acaaccagaa acacccgata aaccaacatt ggaatgtatt       300
     ccaaaactaa actctacaat gacaacgagc tttgcacatc caactaacag tcaggatgct       360
     gcaatagcag acaataacaa ttcaacgggc ggggacccaa ctcacgttag cggtgaagaa       420
     atggatttcg aatccggaaa tactaaacgt cgacacacat ccgaagacga cgaatatgag       480
     gaatatgaat gtgactccag ctccgacagt tctactgact gcgaagagga ggaagatgag       540
     cagtccaatt tatccaattc cgagctccaa ggactacttc aagaaatgaa acttctaaga       600
     gaggagaaca aacgtctcca agccatcatc gcaaaaaacg ctaaatctga tggaaatgaa       660
     aaaaacaaca tgtatccccc cctagaaaca tctggatcaa caaaatacca gaaggttcaa       720
     aacaagaaga ccacgaacaa gaaggcgtct acaacatcaa acgcagccca accaaaatca       780
     acatcagaag gtgagaacaa cgctaagaac ctccctgtaa ttgtccttta caatgaaaac       840
     ccatccaaac ttaaagacat tataagccat aaatattctc tcaacatcct caacaaaaat       900
     gtaacgcaca tcaaacttta taatatagaa acacttgaaa aaactaaaac tatattcgct       960
     aaaaataaaa tgaatttttt cacctatact cctaaagaaa tgaaacccca taacatagta      1020
     attaaaaaaa taccacccac cgtcttcagt aaagaagaag taaagagtgc gctacaagaa      1080
     gctactccgg attttgaaat cttatcagta gaaccattta aaaccaagca ctggcacata      1140
     gttatcaaaa aatctaaaga catatcaaat atctttaaaa ttcgatattt gctaaactgc      1200
     aaggtacaca tagaatcgta taaaccgcac cctaaagaaa taaagcaatg ccgcaagtgt      1260
     caacgttttc atcacgtcgc ttcaaactgt aacatgcctt acagatgcgt aaaatgcatt      1320
     gaaacgcacg cccccgggca atgtaaaatt aaaaaacccg aaaatgaaga cgaaaaattg      1380
     gaaaacgtga cccaatgcgt caactgcaac ggacgacaca cagccaacgc aagaatttgc      1440
     cctacacgca aaaaatatat aaaagaggca atagatagac gtaacagaca atcccacact      1500
     ctatataaaa aaataaaccc gccaacctat aacaaaacac aaaaccaaat aaaagaaggc      1560
     gtaagctact cagccgccct aagaacaaat taccaccata ataacgaaac aacaacaata      1620
     aagaaaaccc ctattaacaa aacaggaaac accaataaat tcacgtttga agaccttaat      1680
     aatgactcaa tgaaactatt tgggaaaaat attgtggact gcatagaaat aatgcaagaa      1740
     accattcaga aatacccaag caatcacaac caaaacacca aaaaacaaat attacttgat      1800
     tttatcgtaa aaatatcaca atgaagttta aatgtatatt ccaaaatgta aacggactta      1860
     gacagcttta caaacgagct gagcttgaga aatatattct aaagcacagg ccaaatgcca      1920
     tgcttatagc agaacatcgc ctatccgaca cccataaccc caatctctca caataccaat      1980
     ttacccgcca aagaccaaac aatcagccag aaaccaataa tcgatactcc aaagcctcag      2040
     tagccattgc aacaaaaaac ggaatgaaat atcaacagct gaacatacca gccacaatca      2100
     acatcgaagc agttgcaatc caaatctgtt acctaaatcg acgacaagaa aggcacagca      2160
     ttgtattagt cacactatac aaaagaccag ggactctgct tcacacagga gacctaaaca      2220
     atataataaa ccatataaat gaacagacca acaatagccc aataataatc ggatgtgatc      2280
     ttaatgcgaa acaccctagc tggcatatac caaaccataa ccccagacac cttaattcaa      2340
     atggacaatt actttacgat tggctcacaa accaacccaa tcttacatta ctttcaacaa      2400
     tagaacccac ccggcccaac caaataatag actcatcaat agactttttt atatgttcaa      2460
     acgaattatc aatagaaact ggcaatatat gcaaaataac caaagacttc ccatcagacc      2520
     attttggagt agaaattaaa ctaaatcttg aaccgtttgt actagatgaa atagacccga      2580
     aaaaaatcta caactttaaa caaatggact cgttaatatg gaacaggacc atcctaacaa      2640
     atctatcacc agtcccaaat tccctaaacc aaacctccga acagatcgac aaccacataa      2700
     ttaaacttaa tcaagcaata gataaagcat taaactccac cgaagccata ccaatcatta      2760
     aaatagatcc aaaaaagcca aacaaaatag tacgtcctag tcctacctgc ctgcaactta      2820
     taaaacactg ccggtatctc agacggtacc tatttcgaca catattttcc ctttcatcac      2880
     atgaaaaaca gtacattaac aatgaaataa aactgttaaa agtggaaata aacaacctac      2940
     taaaaatcag ccacataaac tacatacaac atacaataca acacctaaaa ccaaggaaca      3000
     taagcttaaa aactctgaaa ctcacacaac ctaaccatag aaatcaaaac ataatactca      3060
     caccagttga aatacaaacc attgatataa atactccagc catcttaaaa acagaatttg      3120
     ataaaataaa tggacttgct tggtcctttg aacgaattca caagcaaaat gacagcctat      3180
     cgacagcaaa cccacagcac cagcctcatg ctaacctaat ccaaagcaca gtaagggaaa      3240
     cattctcaaa cgaaaatagc ccatccatca cctttaatga aaatattaca gctgatggaa      3300
     actggcaaaa cgcggaagaa cacgggttca cgaacagcaa tcaacttttt gagcttataa      3360
     agagtggaaa cgcaaagaaa acgctgggtc cagatggaac gagcaactac cttctaaaaa      3420
     gaatgaatat acctgtacta agccacattg cacggatatt taatcactgc ttaaacatat      3480
     catactttcc tagcagctgg aaatgcagca aagtaattgc cattccaaaa ccaaaagcta      3540
     atcatgaatc ccttctggga ttcagaccaa tctcaatact atctgcaata agccaactac      3600
     tagaaaaaat acttgccttg aaactaacag aacatctaga aaataacaca atcctccaac      3660
     catttcaatt tggattccgg aaaaatatgt caatatccca ttcactagca gccgctaata      3720
     actttatata ctccaatata agtaacaaac gagccgtcat agcatgtgcc ctggacttcg      3780
     aaaaagcatt cgatacggtc tggacaaatg cactgatata taaaatgtac cacctacaca      3840
     actttaacca gcatctgact aaaataatat ttaactacct aacaaaccgt tccttctacg      3900
     taatcagctc tgatggcact gaacgctcac ttatccggga aatagtcgca ggagtcccac      3960
     aaggatccac cctagctccc atcctgtata acatctactt agcagacctt ccagaatttc      4020
     agcgacatct taactcaaca tccagagcca taatccagcc atttgtatac gctgacgaca      4080
     tcctactgct cgcctcagga gccagaatct ccaatgctga gactgaccta aacgaatacc      4140
     ttgatcaact gtccgactat tttaataaat ggcgactcaa actaaatacc agcaaatgtg      4200
     aaagcaccat attaaaaggt cacgtgatac gtaatctata cccaaatgct cgtaattttc      4260
     aacccaaaat atatgtcaac agaaacactg aaataaaaaa tgtaaaggaa ataaaatacc      4320
     tgggagtata ctatgacgaa aaactaagtt ttaagccaaa cacacaatat ctccttaaaa      4380
     aagcgaaaat tcaaatagcc caaattcata aagcttttgg tacactcgga acaaatgcat      4440
     cacattcaaa caaagaatta atcaaaataa gatcgctaat atataaaaaa ttaatacaac      4500
     caatactcac atacggccac atagcctggt tcaacttaaa atcaagtgaa atggaaaatc      4560
     taagactttt tgaacgaaaa atactacgta gagccctggg ctcctctgcc agaaactcca      4620
     taacaaatca ctttataaac aacagcaacc tataccaact aacacaaacc aagcgcatcg      4680
     atacccaaat attcaaaatt atcgaacaat tcgttgaaaa caaccgaaac aatagtaatc      4740
     atctgatctc aaacagcgtc gcccaaaaac aacctcctat taacttttcc attcataatt      4800
     tagcaataaa ccatataaac tacctcaaag aaataggaat aatatacaat acaaataata      4860
     aactgatatt ttatcatagg aggcatgact ccataaaccc aaacaatctg gtatacaaca      4920
     caaaccagta aaaatatttt ataataaaca ccagccaccg tgccttaaat accttgtata      4980
     caccatcctt tgtaaatacg cccccaccct tcccattaat cttagtcatc tctagctttt      5040
     aagaacacaa caaccaaaaa tcaaacatca ttctctcagg tttttctgtt ttgtaaacat      5100
     ttttccctga atataagtaa atataagaaa caaaatacaa atacactaat atcaatgccg      5160
     tacagagtac aaataaagat aaatcataat gtaaaaacga acgcccggaa aagcttgaaa      5220
     gcgcagggtt aaaaatgtaa cactaactaa gctaagtaaa cataaacttg tcatttttgt      5280
     attactatta tataagatta actatgtatc taaacccaaa aagaaaccga caataaactg      5340
     aaactgaaac tgaa                                                        5354
//
ID   Jockey-7_DVi repbase;    DNA;    INV; 2072 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.09, Created)
DT   09-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2072
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1948-1948 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1846
FT                 /product="Jockey-7_DVi_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ENIINAIPSHQFGFRREHAAEQQLGRVTQFILEAYED
FT                 NKYCSAVYMDIQEAFDRVWHDGLRFKLKQLLPEVLYRVMNSYLSERTFIVD
FT                 CCGGTRSSLKEICAGVPQGSVLGPVLYTLYTSDMPLPAPLRHKLMLATYAD
FT                 DTAILSSANSQEDAIANLDLFLTTITTWTQKWSISINITKTKHIMHTWRNL
FT                 QMPILSPRILDQRLTTEERISYLGVQVDKKLLLSSHVTTIVARVRDRAKKL
FT                 HWLISERSKLPLKCKVTLYKQLIAPIWQFALPVWGSLLCEGQFERIQVAQN
FT                 KILRTIAGAPWYVRNQSIHTDLKVVPVEKVYQDACSRYWARLSNHSNEEAK
FT                 NIALKARLPQRHLGVRRRYAEMLRKHLPLGRLAQQQRSQQVQQQELPSQGQ
FT                 SGPLQRPPSLRYYLVFDIQELLSQTMVQPNNLQDERSSPSHMQLCSTLAAP
FT                 TRPGALIPPSPETPSSHPNPQTQRDVATGANHEAVCNTMCTLATLFIMAAN
FT                 LYVLVPQRGPKTRTICRTRQLIQLRMAERQIKQRSRYANEPLRWLHTTRCQ
FT                 RVAYLQKFRLRHPIQWKKALMLRFSSTHTNGIWRQDQQWSRWRLQLIQMQR
FT                 LSDWVASRQLGIFPVLK"
XX
SQ   Sequence 2072 BP; 617 A; 545 C; 453 G; 457 T; 0 other;
     ggagaacatc atcaatgcaa ttccgagcca ccaattcggt ttcagacgtg agcatgctgc        60
     tgaacaacaa ctgggtcgag ttacgcagtt tatactagaa gcgtatgaag acaataaata       120
     ctgctctgcg gtctatatgg acatacagga ggcgtttgat cgtgtctggc atgacggact       180
     gcgattcaag ctcaaacaac tattgccgga agtcctctac cgagttatga acagctatct       240
     aagcgaacgc acattcattg tggactgctg tggaggtaca cgttccagcc taaaagaaat       300
     ctgcgccggc gttccgcagg gtagtgttct agggcctgta ttgtacaccc tatacacatc       360
     cgacatgccc ctacctgcac cgctacgtca taaactgatg ctggcaactt atgcagatga       420
     cacggccatc ttgtcatcgg caaactcgca agaagatgcc attgccaatt tggatttgtt       480
     ccttaccacc ataacaacat ggacacaaaa gtggagcatt agcatcaaca ttaccaaaac       540
     caagcacata atgcacactt ggagaaactt gcagatgcca attctttccc caagaatttt       600
     ggatcaacgg cttaccacag aagaaaggat ctcatacctg ggagtacaag tcgataaaaa       660
     gcttcttttg agcagccacg tcaccaccat tgtcgccagg gttagagaca gggccaaaaa       720
     gctgcactgg ttaatatcag aaaggagcaa gctgccatta aaatgcaagg taacacttta       780
     taagcagctc atagccccaa tatggcagtt cgcacttccg gtctggggat cacttctatg       840
     cgaaggccaa tttgaacgta ttcaagttgc gcaaaataag atactgcgaa ccattgctgg       900
     agcaccttgg tacgtgcgga accaaagcat ccacactgat ctgaaggtcg tgccggtgga       960
     aaaagtgtac caggatgctt gctccaggta ctgggctcgg ctcagcaacc acagcaacga      1020
     agaagccaaa aatattgccc ttaaagcaag actcccacaa cgtcacctag gtgtcagaag      1080
     aagatacgct gaaatgcttc ggaaacacct acctctgggt cgcctagcac agcagcagcg      1140
     atcacagcag gtccagcagc aggaactacc ttctcaaggg cagtcaggtc cgctccaacg      1200
     cccacccagc ctcagatact accttgtatt tgacatacaa gaactgctga gtcaaacaat      1260
     ggtgcagccc aacaacctcc aggatgaacg aagcagcccg tctcatatgc agctgtgctc      1320
     aactctcgct gcccctacaa ggccaggagc cctcattcct cccagtccag agacaccaag      1380
     ctcgcatcca aatccacaga cgcagcggga cgtggccacc ggtgcgaatc atgaagcagt      1440
     gtgcaacacc atgtgcacac ttgctacact attcattatg gcagccaacc tctatgtact      1500
     agtaccacag cgagggccta agactaggac tatttgcagg acacggcaac tcatccaatt      1560
     gcgaatggct gaaaggcaga taaaacaaag atcgcgttac gctaacgaac cactcagatg      1620
     gctccataca actcgttgtc aaagggttgc ctacttacag aaatttagac tgcgacatcc      1680
     catacaatgg aaaaaggcct tgatgcttcg tttctcaagc acccatacta atggcatctg      1740
     gcgacaggat caacagtggt cacgctggag actccagctt attcagatgc aacggctatc      1800
     agactgggta gcttccagac aattgggaat tttcccagtc ctcaaataat aatttgacag      1860
     caatccccat gccaaggctg ggcaacttca cttgatttgt atataacatg tcacttaatt      1920
     cattgtaaat actctgggta ttaaatgaat aaaaaaacag tctggatccc agtccccact      1980
     tctctgtctg tcaaccaggc atggagctgg gctctggaat ccagaccgac attgcgtttg      2040
     ttcccttgtg tcgaacggta aacaaaaaaa aa                                    2072
//
ID   Jockey-7_DYa repbase;    DNA;    INV; 3348 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3348
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1928-1928 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           490..3159
FT                 /product="Jockey-7_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLTNAIDIILISETHFTDRSYIRLRGYDFIHANHPSG
FT                 RGHGGAALLIKKGIRYSREATXKEDWVQCAKVDVASPLGKVTIASAYIPPK
FT                 SKVTEGQFNTLLSDMGERFILAGDLNAKHRWWGCRTNNPKGNALLRCVHTM
FT                 GIDCHSTGEPTYWPTDLEKHPDILDIALSKGIDRAKITCHPNADLFSDHSA
FT                 VELFLNLPVQKRAARPRMFRKSTNLEAYKEWLVEAINPDVDLSSAEQVDAS
FT                 IDKLTNEMHSAAEHATPRATGTPRPPYRDIHLWSTEVADMVAEKRRLRRVW
FT                 MHCPRDKRAFNRATKHLKARLLVLRRAAFDSFLSEVEPGDPQHNLWRVTGS
FT                 IRRPTRRAAVVKKADGTWCRSDLDKAEAFAGHLEEAFTPILRCTPEEINET
FT                 LHEEVPPVQIDHHDIDPVTVEEVEAEIRGLKSTKSPGADGLEAAAIKHLPT
FT                 PCIQLLANVYNSCLQIGHFPTPWKKAVVILIHKPGKPEAKLASYRPISLLA
FT                 ILSKIFERILLRRVLPXLDEAGLIPDHQFGFRRSHSTPEQCHRLVSKILDA
FT                 FERKSYCCAVLLDIKQAFDRVWHPGLLLKIRRHLPHPYYTLLQSYLEGRTF
FT                 VVRSGEAYSGTKTINAGVPQGSVLGPILYTIFSADLPVIEDEGLLVATYAD
FT                 DTAFLATARSPDEAAATLQRQLNTIEPWLRKWCITVNEEKSSQTTFALRRG
FT                 NCPPVTLNGVEIPSEPHPKYLGMTLDRRLTWKAHIDRKRRQAEDRLRQYQW
FT                 LLCRRSKLKTRHKTLVYSSIIKPIWTYGCQLWGTACDSNISSIQKFQNKAL
FT                 RMASGAHPYHTNKAIHEALGIPMVKDEIEKACRRHKDKLTNHPNTLATNLL
FT                 RDSQPRSNRRLQKTHPLDRINEMTPATPPLNPSVQHP"
XX
SQ   Sequence 3348 BP; 949 A; 977 C; 828 G; 587 T; 7 other;
     cgtcaaatgc ggggaagacc atatctccgc tgtgtgtggt aagaagaagg aagagccggc        60
     atgctgcgca cactgccagg gagctcaccc ggcttcatat agaggatgcc cggcctacaa       120
     gaaggctaag gcaaacatcg ctccaaaggc accccgccca gcccagtggc acggccctcg       180
     acaaacacaa tcccatccgt tgttcgacac caacgtgaca agctatgcag acatagccaa       240
     agggtatgwg csgccactgc aaccgcacca acagcagccc acgccagagt cccccaagga       300
     ggawcaccaa gcggcagtct tcatgttcag aatggagaaa ctgctagaga aaatgatgga       360
     caagatgttc actcaactga cggcaatggt tagcgccatc ctgtcccagg tctgcagcaa       420
     gtaggcctgc acatagcctt ctggaatgcc aacggcctgg tcagacacag gctcgaagtg       480
     gaacacttca tgctaacaaa tgcaatagat atcatactca tatcggagac gcacttcacc       540
     gacaggtcgt atatccgttt aaggggctac gacttcattc acgctaacca tcccagtgga       600
     agaggtcacg gaggagcggc cttattaatc aaaaagggca tcagatacag cagggaagct       660
     actstgaagg aggactgggt gcagtgcgcc aaggtggacg tagccagccc actaggcaaa       720
     gtcaccattg cctcagccta catcccccct aaaagcaagg twaccgaggg ccaatttaac       780
     acgctcctga gcgacatggg ggagaggttc atcctcgccg gagacctcaa cgccaaacac       840
     cggtggtggg gctgccgaac taataacccc aaaggaaatg ccctgctcag gtgcgttcac       900
     actatgggga ttgactgcca ctccacaggc gaacccacct attggcccac ggacctagaa       960
     aagcatccgg acattctcga catagcgctg tccaagggca tcgatcgagc caagataact      1020
     tgccacccaa acgccgacct attttcggac cacagcgcgg tcgagttgtt ccttaaccta      1080
     ccggtgcaga aaagggcagc tcgaccaaga atgtttagga aaagcaccaa cctggaggcg      1140
     tacaaggagt ggctggtcga agcaataaac ccggacgtgg acctatcctc ggcagagcaa      1200
     gtcgacgcca gcatcgacaa actgaccaac gaaatgcaca gcgcggctga gcacgccaca      1260
     ccaagggcca caggcacacc taggcccccc tacagggata tacacctgtg gtcgacggaa      1320
     gtcgccgata tggtagcgga gaaacggaga ctcaggaggg tttggatgca ctgcccacgg      1380
     gacaagaggg ccttcaatag agccaccaaa catctcaagg ccaggctcct tgtcctacgg      1440
     agagccgcat tcgacagctt tttaagcgaa gtggagccag gagacccaca gcacaacttg      1500
     tggagggtga ccggcagcat cagacgaccg accaggaggg cagcggtcgt caagaaagcc      1560
     gatggtactt ggtgtcgaag cgacctagat aaagcagagg cgtttgccgg tcacctggaa      1620
     gaggccttca ccccgatttt aaggtgtact cccgaagaaa ttaacgaaac cctacatgag      1680
     gaggtaccgc cggtacaaat cgaccaccac gacatagatc cggtgacggt tgaggaagta      1740
     gaagcggaga tccgtgggct aaaatccact aagtcacctg gagctgacgg cctcgaggcg      1800
     gccgccatca agcaccttcc cacaccctgc attcaactac tggccaacgt ttacaacagc      1860
     tgcctacaaa taggccactt cccaacacca tggaagaagg ctgtggtaat tttaatccac      1920
     aagccaggca aacctgaagc taagctcgcc tcctaccgtc cgataagctt gctggcaatc      1980
     ctctccaaaa tattcgaaag aatattattg cgtagagtat tgccagwgct ggacgaggct      2040
     ggtttgatcc cggatcacca gtttggcttc aggcgctctc actccacccc agagcaatgc      2100
     caccggctgg tcagtaaaat tctggacgcc ttcgaaagga aaagttactg ctgtgccgtg      2160
     ctgctggaca tcaagcaggc gttcgacagg gtctggcacc cgggactttt gttgaagatc      2220
     cgcaggcacc tcccccaccc gtactacacc ctgctacaat cctacctaga gggtaggaca      2280
     ttcgtcgtgc gaagtggaga agcctactcg ggcaccaaaa ccattaacgc cggagtgcca      2340
     caggggagcg tcttaggtcc gatcctatat accatattct cggccgacct cccagtcatc      2400
     gaagacgagg gcctcctggt ggccacctac gcggacgaca ccgcatttct ggcaaccgcc      2460
     cgctcacccg atgaagctgc cgctacccta caacgacagc ttaataccat tgagccctgg      2520
     ttgcgcaaat ggtgcatcac ggtgaacgag gagaaatcgt cccaaaccac cttcgcccta      2580
     cgacgaggaa actgcccccc ggtcaccctc aacggagtag aaatcccaag cgaaccgcac      2640
     ccgaaatacc tgggaatgac gctggaccgg cggcttactt ggaaggccca catcgaccgc      2700
     aagagaaggc aagccgagga tagactaagg caataccagt ggctactatg cagacggtcc      2760
     aagctgaaga ccagacataa gacactggtc tacagctcga taataaagcc aatctggacc      2820
     tacggatgcc aactgtgggg aackgcctgc gactccaaca tcagcagcat tcaaaaattt      2880
     caaaataaag cgctacggat ggcctcggga gcccatccgt atcacaccaa caaggccatc      2940
     cacgaggccc tgggtattcc catggtgaag gacgaaattg agaaggcatg cagacggcat      3000
     aaggacaagt tgaccaacca ccccaacacc ctggcgacca atctactacg cgacagccag      3060
     ccacgcagca acagaagact gcaaaagacg caccccctgg acaggattaa cgagatgaca      3120
     ccggctactc cacctctaaa cccatctgta caacacccat gaaattctgc tgaaatgatg      3180
     atgtgttaac ctgatagctt tatatcctga aacttctatg tatatctaca acaatcccac      3240
     gatctgtaac cccttctcct tgccaacgta cgcgtcaaaa catttaataa ttgtcccttg      3300
     cctggacaga ttttaaatat gacacaataa agacaccaca aataataa                   3348
//
ID   Jockey-7_Hmel repbase;    DNA;    INV; 4052 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4052
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1086..3773
FT                 /product="Jockey-7_Hmel_1p"
FT                 /translation="RTXLXFTSKLRIVYWNARGLRRKMPALRYILRQHNVD
FT                 XALVNETHLHPXHSASIPGYHVLRLDATGENAFRGLLVATRRNLVXHXLPA
FT                 IDTQSLQSLGVEIHHXAKPLRVYATYRPGNXXLAXDXXQQHFTSSIPTLVA
FT                 GDWNAHHTAWGCRSTNQAGRYLYRDAQRCGYEIEGPDEPTHYSDNSRHDPT
FT                 TIDLVVHRGLDAIDLEVIPDAFGSDHQPVLVSLEGRPTIARGPPSGGRICW
FT                 EXFEXAXHSXXSPCNEPLVDAASIDRLESAIVGXIKDAVDTATTPPSQRGL
FT                 PPTPRWIEDLIXXKRXXRXXWQKNRDPATKTKLNXLIEXVRVALXDRXAXR
FT                 WEERIXKACEDYPSLNKLSRQIMKKKPPARPXLHQDGSLRYSSEERADMLA
FT                 EYLAAQFQPNPSECPXLHAEVEEEVKXRLXSLKALTAPDPPFFSPSAVKKA
FT                 IRGLKPRKAPGXDGIXNSALRHLDNRLIAATARLFSAILRLGYFPQAWKEG
FT                 LVVMIPKPGKDXRXPEGYRPITLLXAIAKLFERMXLPLLQPHLQPRPEQFG
FT                 FRSGHSTTLQVARVIHFAAAAXNRKESACAAFLDVAGAFDRVWHPGLLXKI
FT                 LRTGTPHHVVAVLAAFLDGRTFRVRVESAVSRSHLIAAGVPQGSSLSPALY
FT                 ALYTDDIPLEQGSMLALYADDIALLAKSLTPVHAATKLQRALDLLPRWLSE
FT                 WRLTLSVAKTQAIXFGGHLRFPPPLXLLGEQVPWSKEITYLGVTIDRRLQM
FT                 SRQVKKAAAAAKVALFHLRPLLRSXLPLRTRLALYKSYVRPHLTYAAPAWY
FT                 ALASAPQRKVLQVVQNVALRRVTQAPYYVRNXTIQRDLRIESLEVHIGRLA
FT                 RNAYSRADASDHPHLXDIAPWHTRPPDRMRLPRDILTLPXSAS"
XX
SQ   Sequence 4052 BP; 854 A; 1381 C; 1050 G; 586 T; 181 other;
     ctttccrcct ctagtggtgg aaaarctccc cgactgggcg cgtcactttc gcgcgctcbg        60
     cgacctcata ggccacgccy ccaacgcacg cccctttgga cagggcgtgc gcttctcacc       120
     ggaatccgty gaagaatacc gcgyaatcca gcggtacctc tccgacctgg agaagtckga       180
     amgaatctcg tggttttcat acgctctdcc ggcggaraag agyaggaaga ttgccataag       240
     ggggctdccg gtyacgacga cgsccgacga gataaccgat gcyctccrag agctcggctt       300
     scaggcygag tacgcccgac cgatcarggc gaggaagggc cggccyggat gcattttcca       360
     cgtgtcgctc accaacaccc cggacctggt acccggcath taccaaatya cygaactact       420
     gaacatgccg ggtatcaaag tvgaaccctg gaggagtaag cggggcccgg cgcagtgcca       480
     tcgytgccag gcgtttcggc actctagcca tgggtgccac cgacgcctgg cctgcgtgag       540
     gtgtggggag gaacacctcg cgcgcgactg cccgcgcccg ctcgaagyac ccgctacctg       600
     cgcraactgt ggmggcgcgc acccrgccaa ccayaycgcc ykcccacagt tcaaacgyga       660
     actgcgcaac aagagggccg gmacagtagc cctstcccwa gccrmcmymg crcgaagrgc       720
     gaagaagscc gccgccccca gratggacga caacacrgtg gaagcggaga aygaggccac       780
     caacctcatg gcccccgcya acccgcccac haacaaagga ggragrcggc caaagaaaag       840
     grgagggaag agaacgagga rgcaacagga gcagrccaga gcctcgtccg ccaacccccc       900
     gcaccccact acacgcmmcc ccgcagccgc agcccccrct gcaggcacca hcgcagccac       960
     aacatgcaca ctgcaggcgc avcctgcact cattgctatt gacagggccc ttgacaccct      1020
     caaraacgtt ctcctcgccc tgagggaagg thaagaccct gtccagtgtg tcatggadgg      1080
     aatgaagaac ctrcttacha ttcacatcta aaytaagrat agtatactgg aacgcccggg      1140
     ggctgcgaag gaagatgccc gccctccgct atatcctgcg ccaacacaac gtcgacrtcg      1200
     cgttggtgaa ygaaacycac ctgcayccgg sacactccgc yagcatccct ggataccatg      1260
     tcctgcggct ggacgcyacc ggtgagaacg cgttcagggg cctyctcgtc gcgacccgca      1320
     ggaacttggt tstgcacmcg ctgccygcca tcgacaccca gtcactccaa tcactgggtg      1380
     tcgaaatcca ccacgamgcc aaaccmctga gggtytacgc yacgtaccgw ccgggcaacr      1440
     ctcrcctggc cgkcgacgyg ktacagcagc acttcaccag cagcatcccg acwttggtcg      1500
     cgggcgattg gaacgcgcac cacactgcct ggggttgccg ctccaccaac caggcagggc      1560
     gatacctcta ccgcgacgcc caaaggtgcg ggtacgaaat cgagggcccc gacgagccca      1620
     cdcactactc cgacaactcc agacacgayc ccacgacgat cgacctggtc gtgcacaggg      1680
     gactagatgc aattgaccta gaagtgatcc cggacgcctt cggatccgac caccagcctg      1740
     tccttgtctc acttgagggc aggccgacca tcgccagagg cccgccgtcc ggtggycgga      1800
     tctgctggga gcncttygag gvmgcgmtcc actcbrdrha dtcsccgtgc aacgaacccc      1860
     tcgtcgacgc agccagcatc gaccgccttg aaagcgccat agtgggnaab attaaggacg      1920
     cngtcgacac tgccaccaca ccacctagcc agcgcggact ccchcccaca cctaggtgga      1980
     thgaagacct cattcvgvar aaaagragva ybcgcamgkw gtggcagaag aacagggacc      2040
     ctgccacaaa aaccaaactc aacvggctta tcgaacavgt cagagtcgcc cttgrcgatc      2100
     ghgavgccva cagatgggag gagcggatct hcaaggcatg cgaggactac ccctcactga      2160
     acaagctnag ccgccagata atgaagaaga agcccccagc ccgcccahta ctccaccaag      2220
     acggctccct gagatactcc tcagaggaga gagccgacat gctggcggaa tatttggcgg      2280
     cccaattcca gccgaatccc agtgagtgcc cagwcctcca tgccgaagtc gaagaggagg      2340
     tgaagdcgcg cctcwcctca ctcaaggccc tcacygcycc hgayccaccd ttcttctchc      2400
     chtcggccgt gaagaaggcr atccggggcc tcaagcccag gaaggctccc ggaahmgacg      2460
     ggatchccaa cagcgccctv cghcacctcg acaaccgwct gattgcggch acggccagac      2520
     tcttcagcgc cattctgcgc ctgggytact tcccccaggc gtggaaggag ggtctggtcg      2580
     tgatgatccc gaagcccggg aaggaccaha ggargccgga gggctaycgc cccatcacvc      2640
     tmttgarygc catcgccaaa ctgttcgaga ggatgttvct cccactcctg cagccgcacc      2700
     tgcaaccgcg gcccgaacag tttggcttcc gaagcggtca ctcaaccacg ctccaagtgg      2760
     cccgagtgat ccacttcgcc gcagcagcag hcaacaggaa ggagagtgca tgtgcagcct      2820
     tcctggacgt cgccggcgcc ttcgaccgcg tctggcaccc aggccttctg ahgaaratyc      2880
     tccgcacbgg aaccccgcac cacgtcgtcg ccgtcctagc cgcctttctc gacggcagga      2940
     cctttcgcgt cagagtggag agtgcagttt cccgcagcca cctgatcgcc gccggggtac      3000
     cacagggcag ctcactatcc cctgccctgt atgccctcta cacggatgac atcccgctag      3060
     agcagggctc gatgttggcg ctctacgccg acgacatcgc cctgctcgcg aagagcctga      3120
     cgcccgtcca cgccgccacc aaactccagc gagcactcga cttgctbccc cgctggctgt      3180
     cggagtggag gctcaccctc agcgtggcta aaacccaggc aatabtgttt ggaggccacc      3240
     tgagattccc tcctccgctg hgcctgctgg gcgagcaggt cccctggagc aaggagatca      3300
     cctacctggg cgtaaccatt gacaggaggt tgcagatgtc caggcaggtg aagaaggccg      3360
     ccgctgctgc caaggtggcg ctattccacc tccgcccgct gctgcgctcc aavctaccac      3420
     tgcgcacdag actdgcccth tacaagtcht acgtgaggcc acacctcaca tacgccgccc      3480
     cggcctggta cgcgctcgca agtgcgcccc agcgcaaggt cctacaggtg gtccaaaacg      3540
     tcgccctccg gcgcgtcacc caggctccct aytacgthcg gaacrccacc atccagcgcg      3600
     acctcagaat agagagcctg gaggtacaca tcggccggct cgcgcgcaac gcatacagcc      3660
     gcgccgatgc htcggaycac ccdcayctcv aggayatygc gccatggcat accaggccac      3720
     cggacaggat gcgcctacca agggatatcc tcaccctncc baahtccgcc tcctgagctg      3780
     ccccttcggt cgctggtcgc ctaagctggg cctctcacgg gtaaccgtga gtctcacctg      3840
     gcttggctga ccgcccaggg ggcatacagc tcatcccttc accatgactc cccccccccc      3900
     agttaacccc ccagttaacc cgattccccc ttggctccca ggccatcccc caatgacgcg      3960
     gctatcgtaa tagccgccgc gagacaccgc agaagaaggg caaccgccct gtactgtttc      4020
     ccggcgcaag cgccggacga atgaaatcca ct                                    4052
//
ID   Jockey-7_HMM repbase;    DNA;    INV; 2608 BP.
XX
AC   .
XX
DT   06-MAR-2013 (Rel. 19.10, Created)
DT   06-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2608
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2802-2802 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2486
FT                 /product="Jockey-7_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="AVIVKSNIKHNEQPQFKKPYIQAATITIEERHGTLNV
FT                 TAIYCPPKYKITAEQYDEFFDTLGSRFIVGGDWNSKNTHWGSRLTNTRGRE
FT                 LKKSIDKNNLFTMSSSEPTNWPSDPNRLPDVIDFFIAKNLTKAFFNIEVCL
FT                 DAHSNHVPVILSIGTTVITALRPNKLYNNRTDWFSFRELIDERLNLVISLK
FT                 TESDIDKAVKNITTTIQECCWSCTPATLERPPQCKVYSDTIRLKILEKRRL
FT                 RRVWHTSRHPNDKTAFNRSMKELKTLTTEANDAALQTYLEGLTATKATNYS
FT                 LYKACKNFDQPLAHKPPLRMPNGEWARDEHTKVEAFAKHLSTVFTPTGEPN
FT                 ADETDIDLVLNQDLQLDVPLKSVTPNETARTIKSMKNNKAPGFDLIDKKVL
FT                 EELPRKAVVYLTMVFNAMMRIGYFPDLWKVSQVMMIHKPGKPPHELTSYRP
FT                 ISLLPAMSKIFEKCLLFRLNLALDKKSIVPNHQFGFRKEHSTIEQVHRVCR
FT                 KIQNSFEKKEYCSSAFLDIQQAFDRVWHRGLLYKIKTLLPHSFYRIMKSYI
FT                 SDRIFQVKERNTTSGFYEVSAGVPQGSVLGPILYTLFTSDLPQNPEVTIAT
FT                 FADDTALLASNKCPIEASKILQNSLNMMKEWLVKWRVAVNVAKSVQVSFTL
FT                 CKKNCTPVTLNGIQLTHQDSVKYLGMHLDRRLTWQKHIKTKRDEIHLKYKC
FT                 LHWLMARNSKLSVDNKLLIYKSMIRPILTYGIQLWGAASASNIMIMQRVQN
FT                 NILRQISSAPWFIKTSELHEHLDVPLVREEIAACSDRYKARLEKHPNLLAK
FT                 QLTIPESIRRLRKARDIFDQGSQHKN"
XX
SQ   Sequence 2608 BP; 898 A; 574 C; 492 G; 644 T; 0 other;
     cagcggtaat agtaaagtcc aatatcaaac ataacgaaca gcctcagttt aaaaaaccgt        60
     acattcaggc agccacaatc acaatagaag agcgacatgg aacattaaat gttaccgcaa       120
     tttactgtcc tccaaaatat aaaataacag cagagcaata tgatgagttt ttcgatactc       180
     ttggctcacg tttcatagtt ggaggggatt ggaattccaa gaacacccac tggggttcca       240
     gactgactaa cactagaggt cgagaactta aaaaaagcat agacaaaaac aaccttttta       300
     caatgtcttc atcagagcct acgaactggc ccagcgatcc gaatagatta cctgatgtga       360
     ttgatttctt tattgccaaa aacctcacaa aagctttctt taacatagaa gtatgtctgg       420
     acgcccattc caatcatgtt cccgtcatac tctcaattgg aaccacagtg atcacagcct       480
     taagaccgaa caaactgtat aataacagaa cagactggtt ttcttttcga gagttgatcg       540
     acgaaagact caacctagta atatctctaa aaacggaatc ggatattgat aaggcagtca       600
     aaaatatcac cacgactatt caggagtgtt gttggtcctg tacgccggca accttggagc       660
     gtccaccaca atgtaaagtt tactctgata ccatacggct aaaaatctta gaaaaaagaa       720
     gattgcgacg agtgtggcat actagtaggc acccaaacga caaaacagca tttaacaggt       780
     caatgaaaga actgaagact ttaacaacag aagcaaatga cgctgcctta caaacttacc       840
     tcgaaggcct aacggcaaca aaagccacaa actattcatt gtataaagct tgcaaaaact       900
     ttgatcaacc attggctcat aagccgccgc tacgaatgcc gaatggagaa tgggccagag       960
     atgaacatac caaggtggaa gcattcgcga aacatctgag cacagtcttc acgccgacag      1020
     gtgaacctaa cgctgacgaa acagatattg atttggttct caatcaagac ctccagctcg      1080
     acgttcccct aaaatcagtg acgcccaacg aaacagccag aactattaag tctatgaaaa      1140
     acaacaaagc acctgggttc gacctcatag acaaaaaggt tctcgaagaa ctaccgcgca      1200
     aagccgtggt atatcttaca atggtcttta atgctatgat gaggatcggg tacttcccag      1260
     atttgtggaa agtttcccaa gtaatgatga tccataaacc tggtaaacct cctcatgaac      1320
     tcacctcata tagaccaatc agcttacttc cggctatgtc aaaaatcttt gaaaagtgcc      1380
     tactctttag acttaatctt gctctagata agaaatccat tgtaccgaat caccagttcg      1440
     gctttcgaaa ggaacactcc accatagaac aggtacatag agtatgtaga aaaattcaaa      1500
     attcatttga aaagaaagag tactgttcat cggcctttct agacatacag caggcttttg      1560
     atagagtatg gcacaggggt ttgttgtaca agataaaaac cctgctcccg cattcattct      1620
     accgaattat gaaatcttat atttctgata gaatatttca agtcaaggag agaaacacca      1680
     cctcaggctt ctatgaagtg agtgcgggtg tgccacaagg ttctgttttg ggacctatct      1740
     tgtacacact atttacatct gatttgccac aaaaccctga ggtaacaatc gccacctttg      1800
     cagacgatac tgctcttttg gcttccaaca aatgtccaat tgaagcttct aagatcctac      1860
     agaatagcct taatatgatg aaggaatggc tcgtaaaatg gagagtggct gttaatgtag      1920
     ccaaatcagt acaggtctca tttaccttat gtaagaaaaa ctgtacacct gtcacactaa      1980
     atggtattca gctcacacac caagactctg taaagtatct gggcatgcat ttggatcgta      2040
     gacttacctg gcagaaacac atcaaaacca aaagggacga gattcaccta aaatacaaat      2100
     gtctacattg gctaatggca agaaactcta agttatcagt tgacaacaaa ttactaatat      2160
     ataagtcaat gataagacca atcttgactt atggtataca actgtggggc gctgctagtg      2220
     ccagcaatat catgataatg caaagggtgc aaaataatat tctgagacag atatcaagcg      2280
     caccctggtt cattaaaaca agtgagcttc atgaacacct tgatgtccca ctagtgagag      2340
     aggaaattgc tgcttgtagt gatcgttaca aagcaaggct cgaaaaacat cccaaccttc      2400
     tggctaaaca attaacaata cctgaaagca tccgccgact caggaaagca cgagatatct      2460
     tcgaccaggg tagtcagcat aaaaactgac tacataaata aaacggtgtg ctccactggg      2520
     agtagcactt aacaagactg tttcctttca ctcatctgct catagctact acggctgatt      2580
     gcacgatatg tttagaaaaa aaaaaaaa                                         2608
//
ID   Jockey-7_LMi repbase;    DNA;    INV; 3430 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 19.11, Created)
DT   23-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3430
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3152-3152 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..696,573..2846)
FT                 /product="Jockey-7_LMi_1p"
FT                 /translation="PPSVVPIMAGSPHRILYHNIRSLPANKPLFMHTLSQH
FT                 CVDAFLLNETFLQPRHSVSTTPYTLHRTDGPPPLARGGVAIGHLRHHPVRP
FT                 QPPVNNPAEHLILTLFLPSLTVTLATIYIRARVPIPYDFISHIDNSFTTYV
FT                 IAADLNLHSRSAAELQRWHQFLPTLRGDLVPLPSPTRPESNTTPDAVLVSP
FT                 NLWDACRRKSLTSLAVTTPPYSSPSTPAAVPAAPPVLCPLLGPLGRLQAEV
FT                 LDLIGSDHAPVLLTFNPRGRPGRATRPVPPPRLVHDYSRADWDAYRRSINT
FT                 SVASHPLSLHTPDDIVHASSFLHQTVADAVATHIPTKAIHPHRPPLPPQAV
FT                 LLLRESRRLYRSFLRTRDRDTLLRHRQLQRHIRNLLNAKKRRDWRQTCTRL
FT                 NATLPINSSKYWKAFHRLTGSHSVPAYPLLHNNLPLPDNASKAQLFADHLS
FT                 NIFDLPDNPRFDYSRFPDVHERTDTSVPPLAPGFQYLDHIPPSDLNTPITA
FT                 QDIVHTLRTKRNTAPGHDRITYRHLRACPPSFHSALASLYNVILFTGFYPD
FT                 LWKTSRILMFLKPDKPPSEASSYRPICLTSVFSKVLESILSRRIHEHLRLH
FT                 QLLPLSQCGFRPSFSVDDQLLRLVHLLSVQVNSRRAAILVSLDIEKAYDRV
FT                 WHSGLLFKLQTYALPINYVRLIASFLSKRPSYVTVNNQNSRLFYPSAGVPQ
FT                 GSVLSPLLYLLYSADMPRPQPPVHLLQYADDTAFLALAPSLARSQHLLQSH
FT                 LSEFSSWCNQWLLTVNPTKSQAIIIGRTTPSFRHRDLYLTLHGRPIPQTKT
FT                 LRYLGLTLDRDLSWNPHLKTVRQKALSRLNLLKCLSGRTWGLNPSTILYTY
FT                 RSLMRPVLCCFHPAWISAPPSYYESLKILERHALRLAYRIRLPSPTRILYD
FT                 LIPFPHLVQFLQHIRLKYIHRKIESHNPLVSPLLLDPGPLPRLYRHIPPSL
FT                 HLHTLYVLSEGGFRHLPLPDDVLHNRPDIYPSFQL"
XX
SQ   Sequence 3430 BP; 633 A; 1381 C; 535 G; 879 T; 2 other;
     cccccctcag tagtacctat tatggcaggc tcgccccatc gtatccttta ccacaatatc        60
     cgctccctcc ccgccaacaa acccctcttt atgcataccc tctcccaaca ctgcgtggat       120
     gccttcctcc taaatgaaac cttcctccaa ccccgtcatt ccgtctctac cactccttac       180
     acccttcacc gcacggatgg tcctcccccc ctggctcgag gcggagtggc gattggccac       240
     ctscgccacc accctgtccg gccacaaccc cctgtcaata atcctgccga acacctcatc       300
     ctgaccctct tcctcccttc cctcaccgtt accctagcca ccatttacat tcgcgcccgt       360
     gttcccatcc catacgattt catttcccac atagacaact ccttcacgac ctatgtgatt       420
     gccgccgacc ttaaccttca ttcccgctct gcagccgaac tccagcggtg gcatcagttc       480
     ctacccacgc ttcggggtga ccttgttccc ctcccgagtc ctacgcgccc tgaaagcaat       540
     accactcctg atgctgtcct tgtctctcct aacctctggg acgcctgcag gcggaagtcc       600
     ttgacctcat tggcagtgac cacgcccccg tactcctcac cttcaacccc cgcggccgtc       660
     ccggccgcgc cacccgtcct gtgccccctc ctcggctagt ccatgattac tcccgcgccg       720
     actgggatgc ctaccgtcgt tccattaaca cctcggtcgc tagccacccc ctctccctcc       780
     atacccctga tgatatcgtc catgcctcct ctttcctgca ccagactgtt gctgacgccg       840
     ttgcaaccca tatccccacc aaagccatcc atcctcaccg tccccccctc cccccacaag       900
     ccgtcctcct gctccgagaa tcccgtcgtc tgtaccgttc cttcctgcgg acccgtgatc       960
     gagacacact cctacgccac cggcaactcc aacgacacat cagaaacctc ttgaacgcga      1020
     agaaacgccg ggattggcga cagacatgca cccgtcttaa tgctacactc cccatcaact      1080
     cctccaaata ttggaaggcc ttccaccgcc ttactggcag tcactcagtc cccgcatacc      1140
     ctcttctcca taataacctt cctcttcctg acaatgccag caaggcacag ctttttgctg      1200
     accacctttc caatatattc gacctgcccg acaatcccag gttcgactac tcccgtttcc      1260
     ccgacgtcca tgagcgcacc gatacctcag tccctccgct cgcccctggc tttcagtatt      1320
     tggaccacat tcccccctca gacttaaaca cgcctattac agcacaagac atcgtacaca      1380
     cgcttcgcac aaaacgtaac actgctcccg gtcacgaccg cattacctac aggcacctcc      1440
     gtgcctgtcc cccctccttc cattccgccc tcgcttcact gtacaatgtc attctcttca      1500
     ccggcttcta cccagacctc tggaaaacct cccgtatcct aatgttcctt aaacctgaca      1560
     aaccgccctc cgaagcctcc tcctaccgtc ccatctgtct cacctcggtg ttcagcaaag      1620
     tcctcgaatc catcctctca cgccgtatcc acgaacacct ccgtctacac caactccttc      1680
     ccctttccca atgtggcttc cggccgtcct tctccgtcga tgaccagctc cttcgccttg      1740
     ttcaccttct ctccgtccag gttaattccc gtcgcgccgc catcctcgtc tccctcgaca      1800
     ttgagaaggc ctacgaccgt gtctggcatt ccggtctcct tttcaagctc caaacctacg      1860
     cccttcctat taattacgtc cgtctcattg cttccttcct ctccaaacgc ccatcctatg      1920
     tcactgtcaa taaccaaaat tcccgtttgt tctacccctc cgccggggtg ccccagggct      1980
     ccgtcctgtc gcccctcctc tatctgttat attcagcaga tatgccccga cctcagcctc      2040
     ctgtccatct tcttcagtat gctgatgaca ccgccttcct tgcccttgcc ccgtccctcg      2100
     ctcgctccca acatctcctt cagtcccatc tctccgaatt ttcctcctgg tgtaaccagt      2160
     ggctccttac tgtaaaccct acaaaatccc aggcaatcat cataggtcgc accacccctt      2220
     cctttcgcca ccgagacctk tacctcaccc tccatggccg ccccatcccg caaacgaaga      2280
     ccctccgcta cctcggatta accctagata gagacctttc ctggaaccct cacctcaaaa      2340
     ccgtccgaca aaaagccctc tcccgcctta acctcttaaa atgcctctcc ggccggacat      2400
     ggggactaaa tccttccacc atcctgtata cctaccgttc cctcatgcgt cccgtccttt      2460
     gctgcttcca tcccgcctgg atatccgctc ccccctccta ttatgaatcc ctcaaaatcc      2520
     tcgaacgcca cgcccttcgc ctcgcctacc gcatccgcct cccctccccc acgcggatcc      2580
     tttacgacct catcccattc ccacacctgg tccaattcct tcaacacatc cgcctcaagt      2640
     acatccaccg aaagatagag tcccataacc cactagtatc tcctctcctc ctggatcccg      2700
     ggcccctgcc acgcctttac cgccacatcc ctccctccct tcacctccac accctctacg      2760
     tcctctccga gggtggcttc cgccacctac ctctccctga cgacgttctc cacaaccgtc      2820
     ccgacatcta tccctccttc caactttgac ctctctctgt agattgccgc cgcctcctcc      2880
     ctccccctcc cgtcccccgc ttggctcacc ccctcctttc tccacctccc cgggagctcc      2940
     ttccttccgg tttcccccat tctcccctcc cccacctccc ttccccttcc cccgcgcctt      3000
     ctccatcctc ccccctcccc ctgcagggcc agtacagtgc tagtgttttt aagtgttcag      3060
     tgcttcgtgt gtatagtgtt tcgtcgccca gtgtttttta acgttgcgta cacgcctgtg      3120
     ggaaaccagt gttcagtgtt ttttacctca atgtcgccgt catgttatgt ctcgtcgtct      3180
     gcagtgagtg ttttttagcc accgtggcaa tgtcttgttt taacaaccat gtatgttctg      3240
     tccactgtca tgttgtcttt taacattctc ccatattttc atcttgtaat tgtaaaagcg      3300
     ccattttatc acctttaatt ttatattctg ttttgtccat tgtttaccat tcgctcggct      3360
     gtagagcagc atcatcggct gctgccagcc tgcctgtatt agggcattaa aattcaataa      3420
     aggaaaaaaa                                                             3430
//
ID   Jockey-7_RPr repbase;    DNA;    INV; 2901 BP.
XX
AC   .
XX
DT   12-MAR-2013 (Rel. 20.10, Created)
DT   12-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2901
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3472-3472 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..1820
FT                 /product="Jockey-7_RPr_1p"
FT                 /note="pre_CCHC and 3 CCHC-zinc fingers."
FT                 /translation="MSNSSDRTVIATSTDNESTTSTSYKRNYPSGVSPKKC
FT                 KKTKSTRNASAKKGPQGPXDQPQNLPAFLQPATPSAEKPEVARGLATVTAP
FT                 PGVLTNNPFAPLADLQDMETAAPASIRVHKPPPIYVKNLSQYTVLCSALSQ
FT                 LVGRDAFICKARITDLVIHAKTIDSYRGIIRYLKQNKADYHTFQLEEDKAY
FT                 RVVLRHLHQSVPVEXIKEELSELGHTVRNVAPVIHPVTKQTLPLFFVDLEP
FT                 RPNNRDVFNIETLCYSRIKVEEPHKQRIVVQCKRCQEYGHTKSYCQHKPRC
FT                 VKCAGEHFTQDCGKMPTTPAKCALCSGDHTASYKGCMVYRELQRARRQPPV
FT                 YEHRSAQRSTPQPPPTTQQSRNFPPLHTPITNQNLSYARVAAGPQPPPISQ
FT                 MPTTSSTGDINTLLTSFLTDFKSLITPLISLLTTVVSRLLPNQSP"
FT   CDS           1823..2899
FT                 /product="Jockey-7_RPr_2p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MALSQHSLTIILWNSNGLTNRRHELEILLRDKRIDIA
FT                 LITETHFTDRSRFFIPGYTTYKTNHPDGTGHGGTAILIRTSLQHFLIPYNA
FT                 TPFLQSTVVSLLTEPFSYTFAAVYCPPNHNIHQNDFSSFLSSLGSRFICGG
FT                 DYNAKHPSWGSRVANPRGRTLRTILNQNSYISLSPSQPTYWPTSPRKRPDL
FT                 LDFFICSNITSLHTDIHTLNDLSSDHSPVILTLDIHPKQALPRQTLINGTV
FT                 DWDLFRETLDGKLNLNVSLKTPQQLDDNVAYLTTAIQQSIWHSTQRTSYNR
FT                 TAPLPLNLPLHLRELITRKRRARALWHRTRYPSHKRLFNQLTRELTTKLRD
FT                 YFNDQFSDYTQSLTTE"
XX
SQ   Sequence 2901 BP; 863 A; 755 C; 482 G; 794 T; 7 other;
     gctctaatgt aagcaagacg cgattattta ttgtgcttat taaaattaaa agttttttgg        60
     taatttatgg actatttgtg ccgatttttg gtaagtaagt accttacctc aagtggtact       120
     tgattctaaa acattctccg gtacattgtg ttcggaagtt tgtttttttt tttttttccc       180
     gtgacaattt attagcatta ttattaactt atattatgtg acaattatta tttttagtga       240
     gtatttcagt tttaggatct aataaactat ataaataaca tagcagtgta ttaaaaaaga       300
     aaaaagtaat tttataaatt taacctggac agtaacttta acaatttttt ttataattat       360
     aatcatctgt aaaattgtaa atattattat tagtgttagg cagtgtacat acgcatatag       420
     ttcgattttc ttttttgttt actaactttt tattactctc tttccgttta tattgttatt       480
     ctcttattta tttctctttc acgatgagca attctagtga ccgcacagta atagcgacct       540
     ccacggacaa cgagtccact acgtccactt cttacaagag gaactatcct tccggtgtct       600
     cccccaaaaa atgcaaaaaa accaaaagca cacggaatgc ctctgccaag aaaggacccc       660
     agggccccat kgatcaaccg caaaaccttc ctgccttttt gcaaccagcg acgccctcag       720
     ctgagaaacc cgaagtagct cggggcctag caactgttac ggctcctcca ggagtgctga       780
     ctaataatcc cttcgctcct ttggctgatc tacaggacat ggagactgca gcgcccgcct       840
     caatacgtgt ccacaagcca cctcctatct acgtgaaaaa cctcagtcag tacactgttt       900
     tatgctctgc attatcgcaa ctcgtgggaa gagatgcctt tatatgcaaa gcaaggatca       960
     cagatctagt catccacgca aaaacaatcg acagctacag gggtatcatc aggtacctca      1020
     aacaaaataa ggcggactac cacacattcc aactggagga ggacaaagcc tacagggtag      1080
     tcttaagaca cctccaccaa agcgtgcccg tmgaatwcat aaaggaagaa cttagtgagc      1140
     tgggccacac tgttcgaaat gtggcaccag ttattcaccc agtcaccaaa cagactttgc      1200
     ctctcttctt tgtggatctc gagccacggc caaataacag agatgttttt aatatagaaa      1260
     ctctttgtta ctcgagaatt aaggtcgaag agccacacaa gcaacggatt gttgtgcagt      1320
     gcaagcgctg ccaggagtac gggcacacga agagctactg ccagcacaaa ccaaggtgcg      1380
     ttaaatgtgc cggtgagcac tttactcaag attgcggcaa gatgccaacc acaccagcca      1440
     agtgtgctct ctgcagcggc gaccatacag ccagctataa agggtgtatg gtgtacagag      1500
     agttgcagcg agctcggaga cagcctcccg tgtacgaaca tcgstcagca caacggagta      1560
     ctccacaacc accgccaaca actcaacagt caagaaactt tcctcctctg catactccca      1620
     tcactaacca aaatctatca tatgcaaggg tggccgcggg acctcagccg cctcctattt      1680
     ctcaaatgcc cacaacctca tccacaggag acatcaatac acttctcaca agcttcttaa      1740
     cagacttcaa atccctcatc acacctctga tatctctcct tacaactgtc gtttccagac      1800
     tccttcctaa ccaatctcct taatggctct ttcacaacac tctctcacca tcatcctctg      1860
     gaattctaat ggactgacta accgcagaca tgaactagaa atattactac gagacaaacg      1920
     tattgacatc gcccttataa ctgagacgca cttcactgac agatcaagat ttttcatccc      1980
     aggttacacg acttacaaga ccaatcaccc cgacggaacw ggacacggag gaactgcaat      2040
     acttattcga acttctttac aacatttctt aattccctac aacgctacac ccttcctaca      2100
     atctacagta gtctctttac tgacagagcc cttctcctac acttttgcag ctgtttactg      2160
     tcctcctaac cacaatattc atcaaaacga tttctcatcc tttctctctt ctcttggttc      2220
     tcgtttcata tgtggtggcg attacaacgc taagcatccg agttggggca gccgggtggc      2280
     gaatccgaga ggtcgaactc ttaggactat cctcaatcaa aatagttaca tttccttatc      2340
     cccttctcaa ccgacttact ggccaacttc tcctcgcaaa agacctgacc ttcttgactt      2400
     ctttatctgt tctaatatta cctctttaca cactgacata cacacwttaa acgacttgtc      2460
     ttcagatcat agccccgtca ttctaaccct tgacattcac ccaaaacaag ctcttccmcg      2520
     acaaacccta ataaacggaa ctgttgactg ggacttattt cgagaaactc ttgacggaaa      2580
     actgaactta aatgtgtcct taaaaactcc acaacaacta gacgataacg tggcatactt      2640
     gactaccgct attcaacaaa gtatttggca ttctactcaa cggacttcat acaacagaac      2700
     tgcaccatta cctctaaatc tacctctaca cttgagagaa ctgataacgc gcaaacgtcg      2760
     cgcaagagct ctttggcatc gcaccagata tccctctcac aaaagactgt ttaaccaact      2820
     cactagagaa ctgacaacaa aactaaggga ctactttaac gaccaattct ctgattatac      2880
     gcaatcactc acaactgaag a                                                2901
//
ID   Jockey-8_BTa repbase;    DNA;    INV; 5390 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5390
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 710-710 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           2193..4934
FT                 /product="Jockey-8_BTa_2p"
FT                 /translation="MNHNKTESILNIITWNANGLTPDKALAFSETMSQLRT
FT                 DIALFSETHFANENRGFIKGYRFYNARHPSNKARGGASVAIRECIKHSVID
FT                 IIETERFQVVIVQVESSLGSFNVGAIYAPPGIRCQTTHYSELLERMGPRFI
FT                 LGGDFNSKNLRWGSRLTNPKGVGLETAVNSIGGDFITPGKPTFYPAGGIKE
FT                 PDILDFFVFNNLSLNNKTVCDVLECKKGQKPKDHIPVKSSILATPTLTKRP
FT                 PCLFSAQTNWNNFRELLTSRIDNSTQINNYETLNKEAEAITSLIQEAAKSS
FT                 TPVARNNANLYPKCTLPEEILKLIDHKKGAARRKKTTHFPADKTYYNQLNK
FT                 VVSKRINAYRNEQFEKFIKNLSASETNDYSLWKATKGLKRPFQASFPIKMH
FT                 NGDWATSSQDKAHTIAAHLESVFQPNPSSSPEIERELEAEVENLEFLPDEK
FT                 IKKITYEDTFNEIKYKTKIKKSPGYDLISAVVLKQLPPAAIKKLTAIFNAV
FT                 IKLKYIPLQWKKAEVIVLLKSGKPASAPSSYRPISLLPLICKLFEKLYIKR
FT                 LFSIVKKKNLLPDEQFGFRPGHSTIEQLHRISAYIEKALEEKQYCNVVFLD
FT                 VAQAFDRVWHQKLSFKLSKLLPGNHVQLLMSYISDRFFRVRFEDSYSDFKM
FT                 IRAGVPQGSVLSPLLYSLFTANIPKPKKGKLGIFADDTAVASSAPTYDETV
FT                 RNLQESLDDIQDWTDNDRTVLNATKSVNVVLTLRPYVHTPLILKNTAIPHS
FT                 SKAPYLGLIMDSKLSWKDHILTKRKQIELKHRKMLWLLGKRSKLKLNNKIL
FT                 LCKSMIRPIWAYGSQMWACAANSNLNQIEITQNKILRQMTGARWYERNADI
FT                 RGELGIESMEVYISRLYTNYEDRLGRHSNPEAISLLDWSAAPRRLKRRKTF
FT                 ELSSPLFRRC"
FT   CDS           join(172..471,475..987,971..2185)
FT                 /product="Jockey-8_BTa_1p"
FT                 /translation="MAGVADTTPPSENSPSESYNPSINVLSSEILSANIQP
FT                 ILNNPNIHDSVKEYMVKAQTVVSELNNFIQKQSKDRRDLVEKYNTNNNLLR
FT                 SMQAQIKELKNNSSANKSVSASDSAPANKKLKSVQPKISNHTNSETKGAPK
FT                 QVTQPTSSGISTSNKFASLEDDVSSANDGDDSESSDCMVDYNSDPEFSSKR
FT                 RAIKAQLKKTPSKRKRANTSASSHDEQQQQPGQLGETQPNSQSQSAVTDPN
FT                 IKKLLPPPPIKIIGIEDYSTLMDLIVKKKYLLKKNIKKEDIRTKIINNSVW
FT                 QVNPKDDNTAKIILNSLRDAQQANTKIQYYTHCNKNLRDIKVIIRGLHPTL
FT                 DESEILLDLQSKGFKAKRATCLLKRVPLTEGELKNLKKQSAQEKLPGTLPV
FT                 EISTDSVSKNNDKITPTVNPSPPVVTPTAMDTNAPETIVDVDNETLFTEDT
FT                 GYVSKTKVIKIPVHQVDFDHTDDIEKIYKIVGICSMTVKVEPIKVSSTKII
FT                 QCRKCQNFGHSWNFCGKQARCVKCAGKHLSADCPWAKRITNPRCANCGGWG
FT                 HPASYRGCPFAKAMQKERLQSIKGRNQKKSGPGDSFPSLPDKNKPNKKNSN
FT                 KSNPSLSDRNIIKPSVTFANAVASNDPLQSGNKYQEELISQLLMTIESLRK
FT                 QIEEMSKRQEKYEAALLGQAINRNSRN"
XX
SQ   Sequence 5390 BP; 1803 A; 1139 C; 959 G; 1489 T; 0 other;
     cagtgctgtt tgataagcga aaccgtcaag acgtcgactc tctcagtgct cccttatcaa        60
     ctctaatcta ttgctttgtt cggtgctacg tggccatagg cctagtgttc acaaagtgaa       120
     taaaatccat tttaaattta tttagttacc taaatcttaa ctacccctgc catggcaggg       180
     gtagcagata ctactcctcc ttcagagaat tccccgtcgg aaagctacaa cccaagcatt       240
     aatgtgctct caagtgaaat tctctcagct aacattcaac caattttaaa taatcctaac       300
     atccatgatt cagtaaaaga atacatggtt aaagcacaga ccgttgtctc cgagttaaat       360
     aatttcatcc aaaaacaatc caaagatcga cgtgatctag ttgaaaaata caatacaaat       420
     aataaccttc ttcgctctat gcaagctcaa atcaaagaac tcaaaaacaa ttaatcttct       480
     gctaataaat ctgtttccgc gagtgacagt gctccagcta ataaaaaact taaatctgtg       540
     caacctaaaa tttcaaacca tacaaacagt gaaactaaag gtgctcctaa acaggttact       600
     caaccaacgt cttcaggtat ttccacctca aataaatttg cttccttaga ggatgatgtt       660
     tcatcggcta atgatgggga cgattctgaa tcttccgact gcatggtgga ctataactct       720
     gatccagaat tttcatccaa gagacgggct ataaaggctc aattaaagaa gaccccatcc       780
     aaaaggaaaa gggccaacac ctcggcatca agtcacgatg aacaacaaca acaaccaggg       840
     caattgggtg agacacaacc aaactctcaa tctcaatccg ctgtaactga ccctaatatt       900
     aagaaattgt tacctcctcc tcctataaag attattggca ttgaagatta ctccacctta       960
     atggatctaa ttgttaaaaa aaaatattaa aaaggaagat atccgtacca aaatcattaa      1020
     taattctgtg tggcaagtga accccaagga tgataacaca gccaaaatta ttctaaattc      1080
     tttacgtgat gcacaacagg ctaacactaa aatacaatat tacacccatt gtaataaaaa      1140
     tcttagagat attaaggtta tcatccgtgg gctccacccc acattagatg aatctgaaat      1200
     tcttttggac cttcagtcga agggttttaa ggcaaagagg gcaacctgtc ttctgaaacg      1260
     tgttcctctt actgagggag aattaaaaaa tcttaaaaag caatcagctc aggaaaaatt      1320
     acctggaact ttacctgtag aaatttcaac tgactctgta tctaagaata atgataaaat      1380
     tactccaaca gtgaaccctt ctccacctgt tgtaaccccc actgctatgg acactaatgc      1440
     accagagacg atagtggacg ttgataatga aaccctcttc actgaagata caggatacgt      1500
     aagtaagacc aaagtcatta aaatcccggt gcatcaggtt gattttgacc atactgacga      1560
     catcgagaag atctataaaa ttgtaggcat atgctctatg accgttaaag ttgagccgat      1620
     aaaagtatct tcgactaaga ttattcaatg tcgaaaatgc caaaattttg gtcattcttg      1680
     gaacttttgt ggtaagcagg ccaggtgcgt aaagtgcgcg ggcaaacacc tgtctgctga      1740
     ttgtccctgg gctaaaagga tcactaaccc gaggtgtgcg aattgtgggg gatggggcca      1800
     ccctgctagc tacagaggct gcccattcgc taaagctatg caaaaagaaa gacttcaatc      1860
     aattaagggg agaaatcaga aaaagtcagg tcctggggac tcttttccat cccttccaga      1920
     taaaaataaa cccaataaaa agaactctaa taaatcaaat ccatctctca gtgatagaaa      1980
     tattatcaaa ccgagtgtta cttttgcaaa tgcagtggcg tctaacgacc cactacaatc      2040
     cggtaataaa tatcaagagg aattgataag ccaactttta atgacaattg agtcactcag      2100
     gaaacagata gaggaaatga gcaaaagaca agagaaatac gaggcggcct tactcggtca      2160
     agctatcaac agaaattctc gcaactaatg tgatgaatca taacaagacg gaaagtattt      2220
     taaatattat tacttggaat gctaacggcc ttactcctga taaggcccta gcctttagtg      2280
     aaaccatgtc tcaactgaga actgatattg ctcttttttc ggaaacacat tttgcaaacg      2340
     aaaatagagg attcattaaa ggatacagat tttataatgc tcgtcatcct tccaataagg      2400
     cgagaggggg ggcctctgta gctataaggg aatgcataaa acattcagtg attgatatca      2460
     ttgagacgga gcgatttcaa gttgtgattg tgcaggttga atcatcgctc ggttctttta      2520
     atgtcggtgc aatttatgca ccgccaggta tacgttgcca aacaacccat tattctgaat      2580
     tactagaaag aatgggccca cgatttatcc tcggcggaga ctttaattct aaaaatctta      2640
     ggtggggatc tcgcctcacc aatcctaaag gtgttggcct agaaacagcg gtaaactcaa      2700
     ttggtggaga cttcataact cctggtaagc ctaccttcta tccggctggt ggtattaaag      2760
     aacctgacat acttgatttt tttgtgttta ataatctttc tttaaacaat aaaactgttt      2820
     gtgatgtttt agaatgtaaa aaaggccaaa aacctaaaga tcatattcca gttaaatcat      2880
     ccattcttgc tactcccact ttgacgaaaa gacccccttg cctcttttcg gctcaaacca      2940
     actggaataa ttttagagaa ttactcacat ctagaattga taattcaact caaataaata      3000
     attatgaaac tctcaataaa gaggcagaag cgataacttc actaatacag gaggctgcca      3060
     aaagttctac ccctgttgca aggaataatg caaatttata ccccaagtgt accttacccg      3120
     aagaaatttt aaaactcata gaccacaaaa agggagctgc gcggaggaaa aagacaaccc      3180
     atttccctgc ggacaaaact tattataatc aactaaataa ggtagtttca aaaagaataa      3240
     acgcttatag gaatgaacaa ttcgaaaaat ttattaaaaa tctaagcgct agtgaaacaa      3300
     acgactattc actttggaaa gcaacaaaag gcttaaaacg tcctttccaa gctagttttc      3360
     cgattaaaat gcataacggc gattgggcta ctagcagcca agataaggcg cataccatcg      3420
     ctgcccattt agaatctgtt tttcagccca atccaagttc aagccctgaa atagaaagag      3480
     aattagaagc tgaagtagaa aatttagaat ttcttccaga cgaaaaaatc aaaaaaatta      3540
     cttatgagga tacatttaat gaaattaagt ataaaacaaa aattaaaaaa agcccaggat      3600
     atgacttgat atcagcagtg gttttaaaac aacttcctcc tgccgctata aaaaaattaa      3660
     cagccatttt taatgctgta attaaattaa aatacatacc cctgcaatgg aaaaaagcag      3720
     aagttattgt actccttaaa tcgggcaaac ctgcttcagc tcctagctct tacagaccca      3780
     tctccctcct tccgctaatc tgcaaactct tcgaaaaatt atacataaag agactcttta      3840
     gtatagttaa aaagaaaaac ttactcccag acgaacaatt tggatttagg cctggacaca      3900
     gtacgataga gcaactacac agaatatccg cttatattga aaaagcgtta gaagaaaaac      3960
     aatactgcaa tgtcgtgttc ctggatgtcg cccaggcttt tgatagggtg tggcatcaga      4020
     aactgtcatt taaactttcc aaattactac cgggcaacca tgttcaactg ctgatgtcat      4080
     acatctctga tcgtttcttt cgggttcgtt tcgaggactc ttactcagat tttaaaatga      4140
     ttagagcagg agtacctcaa gggtcggtac tctctcccct tctttatagt ctttttacgg      4200
     ctaatattcc aaagcccaaa aagggcaaac tgggtatttt cgctgacgat acagccgtag      4260
     cgtcttcagc tcccacatac gatgaaacgg tcagaaatct gcaagagagc ctggacgaca      4320
     tccaggattg gacagataac gatcgtactg tgctcaacgc cactaagtcg gtcaacgtgg      4380
     tattgacatt acgcccctac gttcacacac ctctgatcct aaagaacact gctattcccc      4440
     attcttcgaa ggctccttat cttggcctta tcatggatag taaattatca tggaaagatc      4500
     atatcctaac taaacgtaag caaattgaat tgaagcatag aaaaatgtta tggcttttag      4560
     gaaagcgttc caaactaaaa ttaaataata aaattctctt atgtaagtcc atgataaggc      4620
     caatctgggc atacggcagt cagatgtggg cctgcgcagc aaattctaac ttaaatcaaa      4680
     ttgagataac acaaaataaa atcttgcgcc aaatgaccgg ggccagatgg tacgagcgta      4740
     atgccgatat tagaggcgag ctcgggatag aatccatgga agtatatatt tctagacttt      4800
     acacgaatta cgaagatcgg ctgggtagac actctaatcc ggaagcgata tcgctcttgg      4860
     actggtctgc tgccccgcga cgtttaaaaa gacgtaaaac gtttgagctg agctcgcccc      4920
     ttttccgccg gtgttaggct cttgcctctg acccctgatg gcctatgtcg gctgaagggg      4980
     tacatgcttg ctaaaagcaa aagttctcac gttgcccgtg aggcttgaca tagctaaact      5040
     tagttatttt cctgcttttc ttatcattct ttaaacctca gtaatctacc gcacttactt      5100
     catcattttt cgtaacttca ttttcttaca gttttcaatt cgggcccctg gcccgcttac      5160
     cacaaagtac tcttcgttgc tcttctttgc cttaatattt ccctttttct gatttttcta      5220
     aattttctgt ttccttatat tttgtagcta cctttaacca ttgtaaaagc agatgtttat      5280
     ttatatctag tatataagtt aaagttaaga tttaaaagac cccacaggtc taaaatcttt      5340
     ttgtgtacat cgttattctg attacataaa taaataaata aataaaaaaa                 5390
//
ID   Jockey-8_CQ repbase;    DNA;    INV; 4305 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Jockey non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4305
RA   Kojima K.K. and Jurka J.;
RT   "Jockey non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 119-119 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..1384
FT                 /product="Jockey-8_CQ_1p"
FT                 /translation="MGKKKPKPPPDDVPGVKKSTQHTFDRRDYGPKLKTNP
FT                 TLDTEVKKLAAAGHGYSLRRRASYSDLTSTRNRNTWAGASTQPIPLANGFD
FT                 TLQSMDDDDFSSISGDSIPGVVDIRVKKTTKARCPPITVRNMSAIEINKLI
FT                 SRLGGGGGNYSIRNFEKAVQIKVKCADLFQKITAELVQLNAEFFTHAKPED
FT                 ALVKIVLSGLPVFEVDDLIEELEKNDIFPREVKVLSKSEGGNRALYLLNFL
FT                 KGSVKLTQLREVKTIYNVVVWWRFYTRNKTDVMQCFRCQGFGHGSRYCNMT
FT                 PRCVKCGQKHGSNECQLPTKAELEKAPDDVRQKIRCANCNLNHTANFKECT
FT                 ARKDYLKHQEKKKPRKASPQAEKASPSSRKFTSNVVAPGLSFANIAAGPGT
FT                 GSPPGAAPNDDLFSITEFLGLAREMYARLSKCTTREEQFFALHELMVKYIY
FT                 VH"
FT   CDS           1368..4052
FT                 /product="Jockey-8_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SIFTFTSLTKLKVLNWNGRSVPKKALELSEFIVSQKI
FT                 DVAVLTETWLQGNVSFFIDGYSVVRLDRPTDAAERGGGVALLVKRGIGFKP
FT                 MDNLRTKVIEAVGVRVQTEGDPINIIAAYFPGGRSKEDRVNFKRDIGTLTR
FT                 QSGAYFIVGDLNSRHRMWNCTRANQTGNILMNLFRTSDFFIHAPTTPTYVP
FT                 RGRARPSVIDLVLSNNRVNMSVPKVHQELSSDHLPVTFEIDCIIQAETQAK
FT                 RVRCYDRADWVRFQRDVGGKLDXTVESLNNIQTTAEIDASVRRFTSAVLEA
FT                 EDVAVPWAEYNPQKVVLPDGLRLLITLRNTRRRQFIRSRDPVLGLIVDTLN
FT                 QRIQKECSKLKYKNFGDTVRDIANGHKKFWKISKLVRNKVKHNPPFRIDDG
FT                 LVISPAEKARVLAESFAKAHDNTLPGDPSVNDEVARSMSVVAEANESNDDW
FT                 STYTKPSEIKAIFRKLKNRKAPGQDGLRNITLKHLPRKGLIYLTKIYNACL
FT                 KLSYFPAAWKHALVVAVPKPNKDITQPGNYRPISLLSTLSKVLERIVLARM
FT                 NXHLDNNRIVPDEQFGFRRAHSTNHQLVRIAQAVKKGFDSKKSTGMLMLDV
FT                 EKAYDTVWQEAIVHKLVVANFPLYLVKMLHSFLKGRSFQVNVNGALSAIHG
FT                 IPCGVPQGSVLSPTLYNIFTADVLMIDGVSYAFFADDTGFFATDNDPKIVT
FT                 IKLQAAQNRLEEFQQKWRIKINPSKTQAIFFTRRRAPKYLPSSKVKVCGLE
FT                 VDWSKEAKYLGFVLDTGLRYDKHIDQTLKKCKNLTKALYSLVNRRSRLQLH
FT                 NKLLLYKCVFRAVLTYGSPTWKTCAATHRKKLQRMQNKLLKMIYNLDPWHP
FT                 TDDLHQLAELETIDQFIDRLFQKFRTSCQMSDNPLIEAILPL"
XX
SQ   Sequence 4305 BP; 1171 A; 1125 C; 1074 G; 933 T; 2 other;
     ccaccgtaaa tcgcgggtcg aaatctcgcg cggtttccct gccatgggaa aaaagaagcc        60
     aaagccccca ccggatgatg tcccgggtgt gaagaagtca actcagcata cgttcgatcg       120
     gcgggactac ggtccgaaac tgaaaactaa ccccactttg gacacagaag taaaaaaact       180
     cgcagcagca ggtcacggct attcactccg gcggcgagca tcttattcgg atctcaccag       240
     cacgagaaat cgaaacacct gggcgggtgc ttccacccag ccaatcccac ttgccaacgg       300
     gtttgacact ttgcaatcga tggacgacga cgatttcagc agcatcagcg gcgacagcat       360
     cccgggtgtt gttgacatcc gcgtcaagaa aacgacgaag gctcgctgcc ccccaataac       420
     agtgcgaaac atgtcggcga ttgaaatcaa caaattgatt tcacgtctcg gaggtggcgg       480
     cggcaactac agcatacgaa actttgagaa ggcggtccag atcaaggtga agtgcgcgga       540
     ccttttccag aaaattaccg ctgagctggt gcagttgaac gcggaattct tcacccatgc       600
     caagccggag gacgccctag tgaagatcgt cctttcgggt ctccccgtat tcgaggttga       660
     tgatctgatc gaagaactgg aaaagaacga catcttcccg cgggaagtca aagtgctgtc       720
     gaaatcggaa ggtggaaatc gtgcacttta ccttctcaac ttcttgaagg gttcggtgaa       780
     gctgacgcag cttcgcgagg tgaaaaccat ctacaacgtc gtggtctggt ggcgttttta       840
     cactcggaac aaaactgacg tgatgcaatg tttccgctgc caaggatttg gtcatggcag       900
     ccggtattgc aacatgacgc ctcgctgtgt caagtgtgga cagaagcacg gatcgaacga       960
     atgtcagctt ccaacgaagg ccgagctgga gaaagccccg gatgacgtcc gccagaagat      1020
     aagatgtgcc aactgcaacc tcaaccacac ggccaacttc aaggaatgca ctgctcgcaa      1080
     ggactacctc aagcaccagg agaagaaaaa acctcgcaaa gcctcaccgc aggccgagaa      1140
     agcgtcgccc tcgtcacgga agttcacctc aaacgtggtg gcacccggcc tatccttcgc      1200
     aaacattgct gctggtccgg gcactggctc cccacccggt gcagctccca atgacgatct      1260
     gttttcaatt accgagttct tgggcttggc gagagaaatg tacgctcgac tcagtaagtg      1320
     tacgactagg gaggaacagt tcttcgctct tcacgagctc atggtgaagt atatttacgt      1380
     tcactagttt aactaaatta aaagtactaa actggaacgg acgatccgtt ccgaagaagg      1440
     cacttgaact ctccgagttt attgtgtcgc agaaaattga cgtggccgtt ttaactgaga      1500
     cgtggctcca gggaaacgtg tcatttttca tcgatggtta ttcagttgtt cgactggatc      1560
     gaccaacaga tgctgctgaa agagggggcg gggttgctct cctggtcaaa cgaggaatcg      1620
     gtttcaagcc gatggacaat ctacggacga aggtgattga agcggttggc gttcgtgttc      1680
     aaacggaggg cgatccaatc aacataattg ctgcttactt ccctggagga cgcagcaaag      1740
     aagatcgagt caacttcaag cgtgacatcg gaaccctgac gaggcaaagt ggagcatact      1800
     tcatcgtggg agatctcaac tctcgccaca ggatgtggaa ttgtacgcgg gcaaaccaga      1860
     ctggtaacat tttgatgaat ctatttcgta cttctgattt cttcattcat gctcccacta      1920
     cgccgacgta cgtcccgcgt ggtcgcgcac gaccctcggt cattgatctg gttttgtcta      1980
     acaaccgggt aaacatgtca gttcctaaag tacatcaaga gctatcatca gatcacctgc      2040
     ccgtgacgtt tgagatcgac tgcatcattc aggcggagac acaagctaaa cgagttcgct      2100
     gctacgaccg agcggactgg gtccggttcc agcgggacgt tggcggaaag ctggacgwaa      2160
     ccgtagagtc gctgaacaac atccagacaa cagccgagat cgacgcttct gttcgccgat      2220
     tcacgtctgc agtactggaa gctgaggacg ttgcagtccc ctgggcggag tacaatccgc      2280
     agaaagtggt tctaccagat ggattgcggc tgctgattac actgcgaaac acccgtcgac      2340
     ggcagttcat ccgttcgcga gatcctgtgc tgggcctgat cgtcgacacg ctgaaccaac      2400
     gaatccaaaa agagtgcagc aaactgaagt acaaaaactt cggcgatacg gtccgcgata      2460
     tcgccaatgg ccacaaaaag ttctggaaaa tttccaagct cgtgcggaat aaagttaaac      2520
     acaatcctcc tttccgtatc gacgatggcc tggtcatctc ccccgcggag aaagccagag      2580
     tgctcgctga aagtttcgcg aaggcacacg acaacacctt gccgggtgac ccttcagtga      2640
     acgacgaggt agcgcgatcg atgtcggtgg tggcagaggc gaacgaaagt aacgacgact      2700
     ggtccacata cacgaagcca agcgagatca aagctatctt ccggaagctg aaaaacagga      2760
     aagccccggg tcaagacggt ctgcggaaca ttacgctgaa gcaccttccg cgaaaaggat      2820
     taatctacct cacaaaaatc tacaacgcct gcctgaagct gtcctacttt cctgctgcgt      2880
     ggaaacacgc gttggtggta gcggttccaa agccgaataa ggacatcacg caacccggaa      2940
     actatcgccc cataagcctg ctgagtacgc tcagtaaggt cctggaacgg atagtactcg      3000
     cacgaatgaa cckacacttg gacaacaacc gcatcgtccc cgacgagcaa ttcggattca      3060
     ggcgagcgca ttcgacgaat caccagctcg tgaggattgc gcaagcagtc aagaaaggat      3120
     ttgactcgaa gaaatcgacg ggcatgctga tgctggacgt agagaaagcc tatgacacgg      3180
     tgtggcagga agcaattgtc cacaagctgg tagtagccaa cttcccactg taccttgtca      3240
     aaatgttgca ctcctttctg aagggcagaa gttttcaagt gaacgtcaac ggtgcactgt      3300
     cggccatcca cggaataccg tgtggcgtgc cccaaggttc ggttctaagc ccaacgctgt      3360
     acaacatctt cactgctgat gtactgatga ttgacggagt gtcgtatgcg ttctttgctg      3420
     acgatactgg cttctttgca acagacaacg atccgaaaat cgtcacaatc aaacttcaag      3480
     ctgctcagaa ccgtctggag gagtttcaac aaaagtggag gatcaaaatc aacccttcca      3540
     agacgcaagc catcttcttt acgcgccgaa gagcgcccaa gtaccttccg agttccaagg      3600
     tcaaagtctg cggcttggag gtggactggt ccaaagaggc caagtatcta ggctttgtct      3660
     tagacaccgg gcttcgctac gacaagcaca tcgaccagac gctcaaaaag tgcaaaaacc      3720
     tgacgaaggc tctctactcg ctggtgaacc gacgctcccg attacaactc cacaacaagc      3780
     tgttgctgta caagtgcgtt ttccgtgcag tcttgacgta cggatctcca acgtggaaaa      3840
     cctgcgcagc tacccaccgc aaaaagcttc aaaggatgca gaacaaattg ctgaagatga      3900
     tctacaacct cgatccgtgg caccccaccg atgatctcca ccagcttgcc gaactggaga      3960
     cgatcgacca gtttatcgat cgcttgttcc agaagttccg gaccagctgc cagatgtcgg      4020
     acaacccact gattgaagcc atccttcccc tttaatgaag cggaactcaa ccccaccact      4080
     cgtctgtgat attagtttta agaaacccca agtttcgatc tcactaggtt ttttggccaa      4140
     attttcccta gtttttgttt aattgcattt gaagaacctt ctgttaccaa acggttattg      4200
     aaaaggaaat agttgcaagg aacaccaaat ctctatgaac cagttattca cacaaattgt      4260
     aaaattgtta tttcggtaaa taaaatgaat tgaattgaat tgaat                      4305
//
ID   Jockey-8_DAn repbase;    DNA;    INV; 4541 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4541
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 389-389 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..1754
FT                 /product="Jockey-8_DAn_1p"
FT                 /translation="MSSLSNDQKNERRSSVNQRNGFYSYFSTRDIEMEKSA
FT                 IKSKPALLTAESHRARSCSPALLTPTPASWSSQCKTPPPMAEPNFAPTTSS
FT                 AAISATTATSTATQNTATSTITASTKTTTSESAKTAPAIQTGLDRYIQFKR
FT                 KLSPQSXPAGNKTKINRVQKIDEEPGRSSSNRFALLAEVDENQPAPDTAKK
FT                 PKPPPIYIREKNSSALVNRIAALIGNGDNFHVVPLIKGNIHETKVQTKTEE
FT                 HFRIVSKYLDNARKNYYTYQLKSSKGIQVVVKGIEPDVTAAEIKTALKEKG
FT                 FAAKNVINILNKDKKPQPLFKVELEPESRSLKKNEVHPIYKLQYLLHRRIT
FT                 VEEPHKRNGPVQCTNCQEYGHTRSYCTLRAVCVVCGDTHNSTYCTTNKGST
FT                 AKKCANCGGNHTANYRGCMVYKELKSRMRQATATRNQNPQNVYIASKTTPD
FT                 VFFAKAARSSFGPLNTTNDFSYADALRSGMENPNQPNSHSAQQAPEQPHSK
FT                 TETMMLTLQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK"
FT   CDS           1761..4367
FT                 /product="Jockey-8_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQTLRISMWNANGVSRHKLELSRFLIDNHIDVMLLVE
FT                 THLTSKYNFQIKGYTIYRTDHPDGKAHGGTGVLIRERLKHHFHKRFETNFL
FT                 QATSIQIQSRNGSLSIAAVYCPPRFSISEGQFMDFYNSLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPRGRQLYNAIINVRNKLDYVSPGSPTYWPTDPRKLPDLID
FT                 FAVTKNIPCNLISAKAVSDLSSDHSPVLLTLLQSPEITEHPLSLTSPKTNW
FT                 LKYKKYVSAHIELAPEFNMESDIDYTTSALEEVLVAAAKISTPQGKEVDRN
FT                 KYHKSNQQIEQLVREKRRTRRDWQNSRSPASKQRLKEATRSLDQALHQQEE
FT                 NAQLRYIQNLSPTSTKYPLWRAHPNLSAPIETTTPIRNSSGCWARSDEDRA
FT                 ETFATHLESVFQPNPASNSFLLPVIQPEATPQSTAPSFRPNEIEKVIRGLK
FT                 PKKAPGGDLLTPKMLIELPKCAIEVVCKLFNGIINLGYFPKKWKKSIIIMI
FT                 PKPGKDHTTPSSYRPISLLSCLSKLFEKCLLTRITPHLEACKIIPAHQFGF
FT                 RRNHGTIEQVNRLTSEIRSAFEQREYCSAIFLDVSQAFDRVWLNGLMHKIK
FT                 TYLPTYTHKLLESYLYNRVFSVRCNAATSGDYIIEAGVPQGSALGPCLYVL
FT                 YTADIPTNAQLTTSTFADDTAILSRSRCPTQATNQLANHLIVVERWLSDWR
FT                 IKINEQKCKHVTFTLNRQTCPPLSLNGMQIPQANEVTYLGVHLDRRAHRMQ
FT                 EGAPKTESQQPPLDHKLTIATVPXLQATTLQFSPKANLDVWLPAVGEREQQ
FT                 QHRHHTARTIKNLENYHWGTLVCSQRKHPPGSGHPRSERRNSEAKRVLQRK
FT                 TVFAPKSPRSGIDSGF"
XX
SQ   Sequence 4541 BP; 1503 A; 1197 C; 902 G; 936 T; 3 other;
     tctggggtaa cccaatataa gcgaaaagac gccaattaac cacaatttat taaaagcaat        60
     agacaagctt tttctaacag ttgtgatgtg ctaaaacaaa aactagtgca ttgttttaaa       120
     taaataagtg ccacgcaatg agctcattga gcaacgatca aaagaacgag cgtagaagct       180
     cagtgaacca aagaaacggc ttctactctt acttttcaac ccgcgatatc gaaatggaaa       240
     aatcggcgat taagagcaag ccggctctac tgaccgctga aagccatagg gcacggtctt       300
     gctcacccgc tctgctcact ccgactcccg cgtcatggag ttcgcagtgt aaaacccccc       360
     ctccaatggc ggaaccaaat ttcgcaccaa caacaagcag tgctgcaatt tcagcaacca       420
     cagcgacatc cactgcaact caaaataccg cgacatcaac gattacagcg agtacaaaaa       480
     caacaacttc ggaaagtgcc aaaacggccc cggccataca gactggattg gatcgctaca       540
     tccaatttaa gcgcaagctc agcccgcaga gtaawccggc aggcaataaa acaaaaatta       600
     accgcgtcca gaagatcgac gaagaaccag gaagatccag tagtaacaga tttgccctac       660
     tggcggaggt tgacgaaaac caaccagcgc cagacaccgc aaaaaaaccc aagccccctc       720
     caatctatat cagggagaaa aactcgagtg ccctggtcaa ccgaattgcg gcgttgatcg       780
     ggaacggtga caactttcat gttgtcccgc ttatcaaagg gaacatccac gaaacaaagg       840
     tgcaaaccaa gactgaagag cacttccgta tcgtgtccaa atatttggac aatgctcgga       900
     aaaactatta cacgtaccag ctgaaaagca gcaagggcat acaagtngta gtaaagggaa       960
     tcgaacccga tgttaccgcc gcggaaataa aaaccgccct taaggaaaag ggcttcgccg      1020
     ccaagaacgt tattaacatt ctaaataaag ataaaaagcc acaaccactc ttcaaggtcg      1080
     agctcgagcc agaaagcagg tcgctgaaga agaacgaagt ccacccaatc tacaagctgc      1140
     aatatctttt gcatcggaga atcacagttg aagagccaca taaacgcaac ggtccagtgc      1200
     aatgcactaa ctgccaagag tatggacaca ctaggtcata ctgcacactt cgggctgtct      1260
     gtgtagtctg cggggacacc cacaactcca cttactgcac tacaaacaag ggcagtaccg      1320
     cgaagaaatg tgcaaactgc ggaggcaacc atacggcaaa ctatagagga tgtatggtgt      1380
     acaaggagtt gaagagtcgc atgcgtcaag cgaccgcaac gcgcaaccaa aatccacaga      1440
     atgtgtacat tgcatcaaaa actacgccag acgtcttctt cgccaaagct gcgaggtcct      1500
     cattcggtcc cctaaacacc accaacgact tctcctatgc cgatgctcta cgatctggaa      1560
     tggaaaatcc aaatcagcct aactcacaca gcgctcaaca ggccccagaa cagccacata      1620
     gcaaaacgga aactatgatg cttaccctcc aacaaagtat gatggagctt atgtcattca      1680
     tgaaaacgac catgcaaaca cttgttcaaa accagaacat ggtaatacag ctgctcgttg      1740
     cacaacagtc taaataatct atgcagactc tacgaatatc aatgtggaac gccaatggtg      1800
     tctcacggca taaactagaa ttgtcacgat tcttgatcga taaccatatt gacgttatgc      1860
     tactggtgga aacgcatctt acaagcaaat acaactttca aataaaaggc tatacaatct      1920
     accgcacaga tcatccagat gggaaagccc acggcggaac tggagttcta atcagagaac      1980
     gtttaaaaca ccattttcac aaaaggtttg aaacaaactt cttgcaggcc acatcgatac      2040
     aaattcagtc aagaaacgga agcctttcaa tcgctgccgt ttactgccct cctcgtttct      2100
     caatctcgga aggacaattt atggacttct acaattcact tggggatcgt tttatagccg      2160
     caggagacta caacgccaaa cacacgcact ggggatcacg tctagtgact cccagaggaa      2220
     ggcaattgta caatgcaatt ataaatgtga gaaataaact ggactatgtt tcccctggaa      2280
     gtcccacata ctggccaacc gacccacgca agctcccaga ccttattgat tttgcggtga      2340
     caaaaaacat accttgcaat ctaataagtg ccaaagcagt ctcggactta tcatcagacc      2400
     actcgcctgt gcttttaacg cttcttcaaa gcccagaaat aactgaacac cccctcagcc      2460
     tgacatcgcc aaaaacgaac tggcttaaat acaaaaagta cgtgagtgcc cacatagaac      2520
     tcgccccgga gtttaacatg gaatcggaca tcgattacac tacgagcgcc ctggaagaag      2580
     tactcgttgc ggcagccaaa atctctactc ctcaagggaa ggaagtagac cgaaacaaat      2640
     accacaaatc taatcagcaa atcgaacagc tcgtgcgaga aaagaggcgc acgcgtcgtg      2700
     attggcaaaa cagcagatca ccagcttcaa agcaacgcct taaggaagca acacgatcac      2760
     tcgaccaggc tcttcaccaa caggaagaaa atgcacagct gaggtacatc cagaatcttt      2820
     caccaacaag cacaaagtat cctctgtgga gggcccaccc aaatctcagc gccccaatcg      2880
     aaacgaccac cccgataaga aactcttcgg gatgctgggc tcgcagcgac gaagaccgag      2940
     ctgaaacatt cgctacacat ctcgaaagtg tcttccagcc aaaccctgcc tcaaattcat      3000
     tccttctgcc agtcattcag ccagaggcta cccctcagtc aactgcacct tcattccggc      3060
     cgaacgaaat cgaaaaagtc ataagagggc taaaaccaaa aaaggctccc ggtggtgatt      3120
     tactgacgcc aaagatgctg atcgaacttc caaaatgcgc tatagaggtc gtctgcaaac      3180
     tatttaatgg tatcattaat cttggctatt tcccaaaaaa gtggaagaaa tccatcatta      3240
     taatgatacc gaagcctgga aaagaccaca caacaccgtc atcgtacaga ccaataagcc      3300
     ttctatcttg tttgtctaaa ttgtttgaaa aatgcttgct aactcgaata acaccacatc      3360
     tggaagcttg caaaattatc ccggcacacc aatttggctt ccgaagaaac cacggaacca      3420
     tcgagcaagt gaacagatta acatccgaaa tacgctcagc cttcgaacag cgagaatact      3480
     gtagcgctat ttttctcgac gtatctcaag ctttcgaccg agtttggctt aatggactca      3540
     tgcacaaaat taaaacgtat ttgccaacat acacccacaa gctactggaa tcatacctct      3600
     acaatagggt attctccgtg agatgcaacg cagctacttc gggcgactac atcatcgaag      3660
     ctggagttcc acaaggaagc gcactcggcc cgtgtctata tgttttgtat actgcggata      3720
     ttcctacgaa cgcacaacta acaacgtcaa cattcgccga cgataccgct atccttagtc      3780
     gctccagatg cccaacgcaa gcaacaaacc aattggctaa tcatctaata gtagtggaaa      3840
     ggtggctgtc cgactggcgc attaaaataa acgaacaaaa gtgtaaacat gtaacgttta      3900
     ctcttaatag acaaacatgc cctccgcttt cactaaacgg tatgcagatc cctcaagcta      3960
     acgaagtaac gtaccttggc gtccaccttg atagacgagc acatcgaatg caagaaggtg      4020
     cacctaaaac tgaaagccag cagcctccac tggatcataa actcacgatc gccactgtgc      4080
     ctngactaca agctactact ctacaattca gtcctaaagc caatctggac gtatggctcc      4140
     cagctgtggg ggaacgcgag cagcagcaac atagacatca tacagcgcgc acaatcaaaa      4200
     atcttgagaa ctatcactgg ggcaccttgg tatgttcgca acgaaaacat ccaccgggat      4260
     ctgggcatcc tcgcagtgaa agacgaaatt cagaagcaaa aagagtccta caaagaaaaa      4320
     ctgtcttcgc acccaaatcc cctcgctcag ggattgactc gggtttctag cagatcccgc      4380
     ctgcgacgca acgaccttcc aacccagcaa tcgattttta gggccgtcta actctgtatc      4440
     agtcaacatg actgttagtt aagttaaaaa tataagattt gatacacctc ttgttagtct      4500
     cccaaagaga agattcaaga aatgcaaagg taaaaaaaaa a                          4541
//
ID   Jockey-8_DEl repbase;    DNA;    INV; 7764 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7764
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4603-4603 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           598..2535
FT                 /product="Jockey-8_DEl_1p"
FT                 /translation="MPSNAAAGRLSSDDYLSSPSPTQGKASKNKITVIADV
FT                 HLPTLELNKDKVVDVCNKSMTFICGNNNKPDEQLTVDAINSNNYEPNNHTL
FT                 STHSHKTNLNGVAPASKPGPKCSKRKQPTLSLASKKRTRSISTAELMESAN
FT                 PSVEPFIKHSRAVPVSSTPSKATREVMDIFEVAEDMPCRQIDAQSVTETPI
FT                 TMASVQEDSLAPCQTIQGKNQQPLTDHGDAPVPEEKIPAIFLHNISSIQPL
FT                 VESLNTIEGLRNKYSLTCLKGNRIKLLCKDLLSYQQVLAKLEAEKCQTHTF
FT                 QRRSERGYRVVIRQIHHSTPCDQIRRQLTGMGFSVRYISNIKHRRSRKPLD
FT                 LFEVELAPAADHGNDKVLSITRLGNQVVKVERQLRRLEPAMCHRCQKYEHT
FT                 KANCRRDFVCMKCAGPHATTDCSEVRVPNPKCANCGLGHVASYKGCVEYKK
FT                 AQARLLAHRAHVAVDTVPQNNNMEHRRRETLRVNSGGTRTYPVESPRVRNP
FT                 LHCTPSKATYSQILKKNLQRTVPTENPAENHLKVFQARLQAEQGSLRENPF
FT                 STRPKNFSPGRKNSARSPPTTSGNQLRGQQPHQKPKSLKETCSSPGSPSLT
FT                 TEEMLQLVQQNMIAVSEMGKKVDALFKLVNLLIASSNGQINVNEICHA"
FT   CDS           2523..6971
FT                 /product="Jockey-8_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NLPCLNARNVILNPRNTSGTPTQTNANAGVSVLKSLK
FT                 IAYWNACGLGNKFPDVKIFIQQNKIDIMIITEIRLHCNFDPLTTTNNEVHL
FT                 NGYVLYSATHPTKRSGGTAVFIKSNLRHIALQPIMEDCIQSCPLLITTANR
FT                 EQIVVAPVYLPPQHKWSEVHFNMFFAHMKKLSNSSKIIICGDWNAKNPWWG
FT                 CVRSCARGRNLLRSIHSYNQINILATGGATHYPFDSRKMPSAIDFAVYLGI
FT                 PSDRFRTHSVVDLQSDHLPIFIELAVEGHFENGAQNRRLLPPRANVKKFQR
FT                 ILSDSIHLNTEISSGNDIELVIDSLYNKIYCAAAAASQNNSRPNLRPGQII
FT                 LSQRLQLQLDQKNISKQNFMVRPTPENRRIYQQASRTFSKSVQEEKIKINN
FT                 KIFNNIDPNDRYRMHKLWRIVNRFKRKPEPNWPLKIQETNCGGNGNVGENF
FT                 VWTKSNEEKTEAFVNHLEERFKPKLSTSIEYRDNILSEAKEIIKQKGQISR
FT                 ATWLHREEYGGDHPVAELRFRPIAPSETYKEIKLLQNKKAPGGDRIENCLI
FT                 KKLPHKAVMFITYIFNCILRFGHFPSKWKCAYISMIKKPSKSHHDVNSYRP
FT                 ISLLAGFSKIFEALLMRRMFESKDFEEAVPSHQFGFRKEHNTEQQLFRVTQ
FT                 FIQKAFKKKQYCSAVFIDVSEAFDRVWHHGLLLKLAKLLPYYLLRTLESYL
FT                 TNRTFVVNGYNGHQSRIGKMTAGVPQGSVLGPILYTIYTADMPLPTSVGRT
FT                 LFTEQADHKSMLLSTYADDAVIMCTDKAAHIAIDTNTKYLSEITSWASLWG
FT                 ITLNESKTVHIMFANRAVSVLRGPTAPTIRGTKIKNQFKHRYLGLLLDRRL
FT                 KLNHHTTQLSNRVRAAVYGLSWILGKQSKLPASSKALLYKQLIAPTWQYAL
FT                 PVWGPLVSKTQFGKIEVSHNKMLRWTVQAGRYTRNKDIQSLYNVKAVQEVF
FT                 DEASGRLANSLLAHPNTEMRNLLLNLFTPDNQDLPIYSKQLEKHFEPLRRL
FT                 LLQQPATHQQQIPTLIRLKQQEHEQRNLQQAQLRIEQRESQARQKQALALA
FT                 TGVPQERPSMDWVNNMSRSVRSGTISRVDMAHIIRFQPEYIQRLIMSPLLP
FT                 SEVRTPTPEQQLQAGLNRLKLYLEEELLDSYDTDLSVAVQKTMAVTPNFSH
FT                 SNLQVSTKVTPRCPHTNSDAAPRLPLDQIIDGANPDPLESSAATDVAVLLT
FT                 PGVREEYHQIVPPSPTIHHQAAAPSVLEAFIARPLSGTTEMGPNWTHHTQE
FT                 LRQTTLQQLTAISLGTGFYAPKSAAAKNNSSASPDSPNSSAESGTAAGSSS
FT                 NADKRSNLQIDEILPPGEGKKTLISNMRPHVQKRTVYNDTPVSAPLDSLGS
FT                 TAECSTTGLPRADFTGSSAATGSGCFEDAKELVSTTSLISASCSHESLSYP
FT                 AGPAPSATAPLGSVCIQYSQQTRWQISQQPTVDSPEVGVANLQLAVSNHIN
FT                 PDSPEALNEADTCCNNHP"
XX
SQ   Sequence 7764 BP; 2372 A; 1902 C; 1559 G; 1929 T; 2 other;
     cggaatatat taaagttttt cgtacgtgca cgtgtaattt actgaccaat tttaacttgt        60
     taaaaatgtt ttatgtgaac tttgacgcgc atgtattagt gcaattgtta tgtcctgtgt       120
     atgtgaactg tctacactga tacatgcatt tgtgctgtga aaaactttgt aacgcaccca       180
     cgcagaaaam attttcttcg cgccaatttg tgttgtttcc gcgccaaaac ggaactcacc       240
     acacgctgac acacacagac cgtgtatgtg aactgtctac attgatacat gcatttgtgc       300
     tgtgaaaaac tttgtaacgc acccacgcag aaaaattttc ctcgcgccaa ttcgtgtttt       360
     ttccgcgcca aaacgaaact caccacacgc tgacacacac agactgtttc aaagtcacac       420
     acactagtgc agcctaacca aactatggtg cgcgcgtgct aatatataag aaaaacctat       480
     taccaaaaaa taaaactcac cacatactaa tacacgcaag gcgaactgtt cccaagccac       540
     aattactact gcaacttaac caaactttag tgcaagtgtg ctaataaaac gagaaaaatg       600
     ccttcaaatg ctgctgctgg ccgcctgagc agtgatgact acctctcttc accgagccca       660
     actcagggta aagccagcaa aaacaaaatt actgtgattg ctgacgttca cttgccaact       720
     ttggagctaa ataaagacaa agtagttgac gtatgtaaca aatccatgac tttcatctgt       780
     ggaaacaaca acaaacccga tgaacagctc actgtggatg ctattaactc taacaactat       840
     gaaccaaata atcatacttt atctacccat agtcataaaa ctaaccttaa cggagttgct       900
     cctgcgtcca agcctggacc aaagtgcagc aaacggaagc agcccactct ctcgcttgcc       960
     agcaaaaagc gtaccaggtc catttcgacg gctgaactaa tggagtctgc taatccatct      1020
     gttgagccat ttattaagca ttcccgtgct gttccggtat ccagcacccc gtctaaggcg      1080
     acgagggaag ttatggacat ctttgaagta gctgaggata tgccctgcag acagattgat      1140
     gcccagagtg taacggaaac gcctattacc atggccagcg tacaggaaga cagcctggcc      1200
     ccctgccaga caatccaagg caaaaaccag caacctctta cggatcatgg agatgcccct      1260
     gtacctgagg aaaaaatccc tgccatattt ttacacaata tttcttcmat ccagccacta      1320
     gtagagtctc ttaataccat cgagggactt cggaataaat attctttaac ctgcttaaaa      1380
     ggaaaccgaa ttaaactttt gtgtaaggat ttactttctt atcaacaggt tttggcaaaa      1440
     ttggaggcgg agaaatgcca gacgcatacc ttccagcgac gctcggagcg tggatacagg      1500
     gtggtaatta ggcaaatcca ccactctact ccctgtgacc agattcgccg ccagctaact      1560
     ggtatgggct tctctgtccg gtatatcagc aacattaaac atcgacgtag ccggaaacca      1620
     ttggacctat ttgaggttga gctagcacct gctgctgatc atggaaatga caaggttctc      1680
     agcatcacta gattgggaaa ccaagttgtg aaagttgagc gacagctgag gagacttgaa      1740
     cccgctatgt gccaccgctg ccagaagtac gaacatacaa aggcaaactg ccgcagggac      1800
     tttgtctgca tgaaatgtgc gggtccgcat gctactacag attgctcaga agtaagggta      1860
     ccaaatccca agtgtgccaa ctgtggactg ggccatgtcg ccagttacaa gggctgcgtg      1920
     gaatacaaaa aagcgcaggc ccgactcttg gctcaccgtg cgcatgtcgc cgtggatacg      1980
     gtacctcaaa ataataatat ggagcacagg cggcgggaaa ctctcagggt aaactcaggt      2040
     ggcaccagga catacccggt agagtctccg cgagttcgta accccctcca ctgcaccccc      2100
     tccaaagcta cctacagtca gatactcaag aaaaatctgc aaaggacggt ccctacggaa      2160
     aaccccgcgg aaaatcatct aaaagttttt caagcccgcc tacaggcgga acagggcagc      2220
     ctcagggaaa atcctttttc aacccgtcct aaaaattttt ctcccggcag gaaaaacagt      2280
     gcgaggtctc cccctacaac gagcggcaac cagctgcgcg ggcagcagcc ccatcaaaaa      2340
     cccaaatcgc tgaaggaaac ctgttccagc cctggctccc cctcacttac tactgaggaa      2400
     atgctccagc tggtccagca aaacatgata gccgtgagtg aaatggggaa gaaggtagat      2460
     gccctcttta aattagtaaa tctccttatt gcctcatcca atgggcaaat aaatgttaat      2520
     gaaatttgcc atgcctaaac gccagaaatg tgatactaaa tcccagaaat acctcaggta      2580
     ctccaactca aacaaatgcc aatgcaggtg tttcagtact caaatcactt aaaattgcgt      2640
     attggaatgc ctgcggcctt ggtaataaat ttcctgacgt aaaaattttt attcagcaaa      2700
     ataaaataga tattatgatt attactgaaa ttcgcctaca ttgcaacttt gaccctctta      2760
     ccaccaccaa taatgaggtc caccttaatg gatatgtttt atacagtgcc acccacccca      2820
     ctaaaaggag tggtggtacg gccgttttta taaaatctaa cctcagacat attgctctac      2880
     aacccataat ggaagactgc attcaaagtt gcccgttact catcacaact gctaataggg      2940
     aacagatagt cgttgctcca gtctacttgc caccccagca caaatggtca gaagttcact      3000
     tcaacatgtt cttcgctcac atgaagaaat tatcgaatag ctcaaaaatc atcatatgcg      3060
     gggattggaa tgccaaaaac ccctggtggg gctgcgttcg atcctgtgca agaggcagga      3120
     acctcttgcg ttcaattcat tcatataatc agataaacat actggcaact gggggtgcca      3180
     ctcactaccc tttcgacagt aggaaaatgc catctgcaat cgattttgcg gtctatctag      3240
     gtatacctag tgataggttt cgcactcact cagtagtaga tctacaatct gaccatcttc      3300
     ctatctttat tgagctggct gtagaaggac attttgaaaa tggtgctcaa aaccgtcgac      3360
     tcctgccacc tagggcgaat gttaaaaaat ttcaacgcat cctatctgat tccattcact      3420
     taaatacaga aatttcatca ggaaatgata tcgaacttgt tattgattct ctatataata      3480
     aaatctactg cgcggctgcg gcagcgtccc aaaataactc gcgcccaaac cttcgaccag      3540
     gacaaatcat ccttagccag cgacttcaac tgcagctaga ccagaaaaat attagcaagc      3600
     aaaacttcat ggttaggcct acgccagaaa atcgaagaat ttaccaacaa gcaagtcgta      3660
     cattttcaaa atccgtgcag gaagagaaaa tcaaaataaa taacaagatc tttaataata      3720
     tcgatcctaa tgatcgttat aggatgcata agctatggag gatagttaac cggttcaaaa      3780
     gaaaaccgga gcctaactgg cctcttaaaa tacaagaaac taattgtggt ggtaatggca      3840
     acgttgggga aaactttgta tggacaaagt caaatgagga aaagactgaa gcatttgtta      3900
     atcatctaga ggaaaggttt aaacctaagt tatcaacctc tatagagtac agggacaata      3960
     tactttctga agcaaaggag attatcaaac aaaaagggca aatttcaagg gctacatggc      4020
     tccacaggga ggagtatggg ggagaccatc ctgttgcgga attgcggttc aggccgattg      4080
     cgccatcaga aacttacaag gagatcaaat tattacagaa caaaaaggca cctgggggtg      4140
     acagaatcga aaactgccta attaaaaagc ttcctcacaa ggctgtaatg tttattacgt      4200
     atattttcaa ttgtatatta agatttggtc actttccatc aaaatggaaa tgtgcgtata      4260
     tctctatgat taaaaaaccc agtaaaagtc atcatgacgt taactcttac agaccaatca      4320
     gccttttggc tggcttttct aaaatatttg aggcgcttct catgagaaga atgtttgaga      4380
     gtaaggactt tgaggaagca gtcccctccc accaatttgg gttcagaaaa gagcataata      4440
     cggaacagca gctgtttagg gttacgcaat ttatacaaaa agcgtttaaa aaaaagcaat      4500
     actgctctgc cgttttcatt gatgtcagcg aagcatttga ccgcgtatgg catcacggtc      4560
     tgcttttaaa gctggctaaa ctgctaccgt actacctcct gagaaccctg gaaagttatc      4620
     taacaaatcg cacttttgtt gtaaatggct ataacggaca tcagtccaga attggtaaaa      4680
     tgactgcggg cgttcctcaa ggcagtgttc tagggcctat tctctacacg atttacactg      4740
     ccgacatgcc gcttcctact tctgtcggac ggacactttt tactgagcaa gctgaccata      4800
     aatccatgct actttcaact tatgcagacg acgctgtcat tatgtgtacg gacaaggcgg      4860
     ctcatatagc aattgacacg aataccaagt atctctctga aatcacaagc tgggcgtcac      4920
     tttggggtat taccctaaac gaaagcaaaa cagtccatat tatgtttgca aatcgtgctg      4980
     tttcggtttt acgtggacca acagccccaa ctatacgtgg tactaaaata aaaaaccaat      5040
     ttaagcatcg ctatttagga cttttactag ataggaggct aaaattaaat caccatacca      5100
     cccagttatc aaacagggtg cgagctgctg tttatggttt gagctggatc ctgggtaagc      5160
     agagcaagct cccagcttca agcaaagcac tactatataa acaattaatc gcgccaacct      5220
     ggcagtacgc actccctgtc tggggtccac tggtttcaaa aacacaattt ggtaaaatag      5280
     aggtgtcaca caacaaaatg ctacgctgga ctgtgcaagc cggccgttat acaaggaata      5340
     aggacattca aagcctttac aacgtgaagg ctgtgcaaga agtatttgac gaagccagtg      5400
     gcaggcttgc caactcactc cttgcacacc cgaacacaga aatgagaaat cttctcttga      5460
     atctatttac tccggataac caagacttgc caatttactc gaaacaactt gaaaaacatt      5520
     ttgagccttt gcggcgttta ctgctacagc aaccggcaac acaccagcag caaattccaa      5580
     ctctaattcg ccttaaacaa caagaacacg aacagcgtaa tctacagcaa gcacagctgc      5640
     gcatagaaca acgtgaaagc caggctaggc aaaaacaggc actagcgtta gcgaccggcg      5700
     taccccagga aaggccgtcg atggactggg tcaacaacat gtcacggtca gtcaggagtg      5760
     gcacgattag ccgtgtagac atggcccata tcatcaggtt tcagccagag tacatccaga      5820
     ggcttattat gagcccgcta ctaccatccg aggtccgcac gccaactcca gagcagcagc      5880
     ttcaagctgg cctgaacagg ctgaaactgt acctggaaga agaactatta gattcatatg      5940
     atacagattt atctgtggcg gtccaaaaaa ccatggccgt cacccctaat ttttctcact      6000
     caaatttaca ggtttcaacg aaggtcactc ctagatgtcc acacaccaac agtgatgctg      6060
     ctccaagatt gcccctcgac caaatcattg acggcgctaa tccggatccc ttggaatcgt      6120
     cggcagcaac tgatgtggct gtgctactca ctcctggtgt gagagaagag tatcaccaaa      6180
     ttgttccacc ctcgcccact attcatcacc aagctgcagc tccaagcgtt cttgaagcct      6240
     ttatagctcg cccgctgtct gggacaacag aaatggggcc aaactggact catcacacac      6300
     aggaactgcg acaaactact ctccaacagc tgactgcaat ctcccttggt actggattct      6360
     atgctccgaa atctgctgcc gccaaaaaca atagcagcgc tagcccggac tctccaaact      6420
     catcagctga atcaggtaca gctgcgggct ccagctccaa cgcagacaag cggtcaaatc      6480
     tgcagataga cgagatactt ccacctggcg agggaaaaaa gactttaatt agtaacatgc      6540
     gaccacacgt acaaaaacgc actgtttaca acgacactcc agtttctgca cctctggact      6600
     ccttgggcag tactgctgaa tgctctacaa ctggtttgcc ccgagctgac tttactggat      6660
     cctccgcggc cactggttcg ggctgttttg aagacgcaaa agaactggtc tccactacat      6720
     ccttgattag cgcctcctgc tctcacgagt ccttatcata tccagctgga ccagctcctt      6780
     ctgccactgc tcccttgggg tcagtgtgca tccagtattc acagcaaact cggtggcaaa      6840
     ttagccaaca accgacggtg gactctcctg aagttggcgt cgctaatcta cagctggctg      6900
     tatccaacca cattaatccg gactctccag aggctttgaa tgaggctgac acgtgctgca      6960
     acaaccaccc ctagtacgag aggaaaagac ttgtaagtta cagcgtgcaa aaactctgac      7020
     gatactttct cccctgtgga ttggaaactt gctgctactt aacttcgccg actccgctgg      7080
     ctggtacacc tccatcgaca ctggacgcct tcctgtggat gcggcaactc caaatcctgt      7140
     tggcagaaag ccgcgaaata cctgaaaaga aaatttttat tagcaaactt gtaaattcta      7200
     aaaatgtaaa caaaccagcc atgctggctt ttttcgattg tcatgccgcg atatcgggtc      7260
     actaaggcca ctatcgatat tcgcggcagt gactcttgac atcgatactc aggcattttt      7320
     ggtcacacct cacagttaac agttcctata agaatatttc gatagtaata atttgtcgcg      7380
     tttagtcaca attccatgta tttaaaacct gttaaaacat tcagcattta ttttttatgt      7440
     taacactgtt aaacaaagct cttaaagcct actatttcta taagaatatt tcgatagcga      7500
     taaattgtcg cgtttagtca cagttccaag tattttaaaa aacctgttaa catactcagt      7560
     atttattttt aagatatttt tatgttacta ctgttaaaat actcttaaag cctactattg      7620
     taaaggcctc tgctaacgcc actaaatact atttatatat agctaacgta tataacgagc      7680
     tgaaataaat actaagccac acacctattc atataggcag agtggtctta cttgtgaccg      7740
     tttcaccggc accaaactga aaaa                                             7764
//
ID   Jockey-8_DEu repbase;    DNA;    INV; 3846 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-3846
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 954-954 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. ORFs are broken.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3846 BP; 1215 A; 887 C; 798 G; 943 T; 3 other;
     caacacccgt aactaacacc gttacagcta caagtggcag ttctggcacc accacgtaca        60
     ccgttgcagc ttcttctcgt atgagtccag tttctacagc aaaattgtct ttggggactt       120
     ataatttctc aacagtaccg gctatggggt gctcaagttt caagcaccaa gtaccaagta       180
     tctcttcgca gaaaacgaaa ccctmctgac tgcagcaaag aaccagccga cataaagaag       240
     agcaaatcta atgtaaacaa ggccagaatc gcttgttcaa atcaggcttc gacgtctaat       300
     ggactgagca acaaccgctt cgcacgttta gctgaggaaa taaactctat tgaggagatg       360
     gagacgaatg aggagtcgtt tgatcccaat agccgagcgt aaagttcaag ccaacctgaa       420
     ccggcgaagc cgaaacctcc gcccatatgt gttccaaagg ttactaatat cctcactctg       480
     gaacgaaccc tagatgaaat aatcctggca gataggtatg agatacgttc atccaaattc       540
     ggaattactc gcatatacac tgatagtgcc gagtctttcc gcaaatgtag ttcgtmgctt       600
     gactgactgg acctggtaca gtgttataaa tgccaaaatt ttggacacac ccaaaattgt       660
     tgctttataa agccggtttg tgggaattgt gccggggacc gccctaccaa ctccaaatcg       720
     tgtgagtcgc atctcaacaa ccaatgcttg tgtgcaaact gcggagaaaa tcaccctgca       780
     ggttttaagg gctgcaaagt tagaatggaa ctgagcaaaa acttaaagac tggagtaagt       840
     ctaaggaaca caacgaatgc taggactaac gaaagccgac acggtcaact attctcgacg       900
     gcagctacca gagatggcgt atcctatgca gatatggcaa gaaatakcat tccaaacaat       960
     tgcagcgctg cagctaggca gactgttcca catgtacctg aaaatgacca caacccaaat      1020
     cgaaacttgg ctaccttgga gaaggcaatc tttgatataa atgctaggct ggatcaactc      1080
     ttcaagctag ttatggaaac gattgagtcg aacaaggctt ttcgtgatct agttcaggtt      1140
     cttatttcta ggaaatgaca gtctcagcta taaaaatcgg attatggaat gcaagaggaa      1200
     tagttaacaa aagcgaagaa cttcgtcttt tccttcttga taactcagtc gatataatgc      1260
     tcattactga gacgcagatg cgtcccggtc ttaaaatgta ccttcctggt tatgaccaat      1320
     attttgccaa tcaccctagc aacactgcta aaggcggttc tgctattttt atcaagacca      1380
     acattacaca cactcagact gagtccactt cgcgaactga gttacagata gctagtcttg      1440
     atatcccaac aaatgtaggg gtccttaaaa tagcttcatt gtatcttcct cccagtgagc      1500
     cttggacaaa gaacgatttt gaccagcttc tagcccgaaa ttcttagctg gaggtgactt      1560
     taacgccaag catcaatggt ggggcaattt aaggtcttgt tgtcgaggaa agcgtcttca      1620
     agaggccata gcttctagct ctagtcaaat tctagctact ggggaaccca ccttttattc      1680
     tgccaataca aggctcacgc caacagctct tgactttttc atcgtaaatg gaatacaact      1740
     caacaaactc tcggtcgaaa caaaatacga gctatcctcg gaccatttgt caatagttgc      1800
     aacgcttagt caaactcctc aatacaaggc caaacggaaa ccacttctac cgcacggctc      1860
     ctccgttgga aagtttaagg aaaccctgga cagaagcata aatctcaaca ctgtgattaa      1920
     ccatccagat gagcttgaag atgcggtaac gctttttatg gagcaaatat acactgctgc      1980
     gagagctgct accccaaacc aaaggcaacc tccagaccaa aatagaaatt tgctcccaca      2040
     aaatgcatta gtactcatac agctgaaaag aagagttcgt cgagaataca caagaacagg      2100
     agatgtgcgc gtctacaaca tttacaagag actttcaaat cgattaggaa ataatgacca      2160
     tatgttggaa aatgcgagtc cagatgcatc gactaactac tctcttggaa gctcacgaat      2220
     cgagtctgga caggcctttt caaatggctc ttcccacaaa gcctgttacc ctagaagaag      2280
     ttgtgacaca gatcggaaag ctcaaaaaca aaaaagcgcc aggcgaggac cttatagaca      2340
     acaaaacgct caagattctt tccacaaaag cactgctgtt tatagttctg ttgttcaaca      2400
     gcgtcttaag gctgagtcac tacccaagta catggaaaag tgctattatc acaatgattc      2460
     cgaagcctgg aaagcaaccc accgaagtag acgcatacag gccaataagt ctattacctg      2520
     cactgggcaa aatgatggaa agagtaatac tggatcggat tcttcggctt gaaagtgtga      2580
     gcagagctat tccaaggtgg cagtttggtt tccgaaaaag tcacggcacc cctgaacagc      2640
     ttcatcgcgt gattaatttc gctctggaag ccatggaaag caaaatgtac acagttgctg      2700
     tgtttatgga tatccaacaa gcctttgata gggtatggca cgacggcctc ctaagcaagc      2760
     taaagatact actaacgccg cagcttttcc tcctcataca gagcttttta tcggatagga      2820
     aatttagtgt tgttgtcgat ggtgaaaagt cgtcaaaacg tccaatctca gcgggtgtac      2880
     cacaaggcag tgtactaggc ccgacacttt actcactgta tacgtcagat atgccagatt      2940
     cctggtgttg tactgaagtt gacgatgatg acatgctaat cgcaacatac gccgacgaca      3000
     cagcggttat ggtccggaat ccaagcatag acgttgcaac cttaggcctg caggagtacg      3060
     tatcaagttt tgaaaaatgg acaaccgaat ggaacatagg cataaactgc aacaaatgtg      3120
     cctgtgtcac tttctccaca aggccaaaaa actgcccagg catttccatg ctcggttctg      3180
     tacttcgtca cgagtcacac tacaagtacc ttggtgtgat tttggataga gggctcacct      3240
     tccagaggca cacaacaatg gtgaagcagt cagtgctttc aaaggcagca agtatgtcct      3300
     ggctactcac ggcaagaaat aagctttctt tgtccaacaa agttcgaatt tacaaatcga      3360
     ttatcagtcc aatctggaaa tatgcactac aggtctacgg cgtagcgtct aagtcgaacc      3420
     taaacaaaat acgtgtagcg caaagcaaga ttgtcagatc gatttgtaat gccccatggt      3480
     acatgagaac cagagacata gaaagagatc tacaaatccc aatgataggc gatgtttgtc      3540
     gaacgcatgc tgaaagctac ttcagacgcc ttggcactca tcctaactcc ctggcgaaga      3600
     ggctaatttg gagaccaaga aggagaagac tcaaaagata ccacccacac gatctcccat      3660
     taagatatat gtaacaccct cgaagtctga tgtaatttaa gctgtaaatg aatagaaata      3720
     ttgtattttg taacctttat accaacactt tgttatcccc tatatttaaa acctgctcaa      3780
     gctgccacat aggtagcagt atacctgtta attctgaata aatatcaaaa aaagattaaa      3840
     taaaaa                                                                 3846
//
ID   Jockey-8_DF repbase;    DNA;    INV; 3459 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3459
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 976-976 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..679
FT                 /product="Jockey-8_DF_1p"
FT                 /translation="PETLKLKNNEVHPIYKLQYLLHRRITVDEPHKRNGPV
FT                 QCMNCQEYGHTKTYCTLRAVCVACGDAHSTEACPINKDNHSAIKCSNCGGN
FT                 HTANYRGCPVYKELKSRLGQHITAARNPVTRNSSPFISTTTIPGVSFAQAL
FT                 SNNNGANATVSKVTVQQTTADTVRQQILNQTPETTGQHANANTQLPNGVEA
FT                 MLVTITNTMVAIQQTLQELMRSQNLLLELLIKQKSV"
FT   CDS           join(683..2677,2466..3194)
FT                 /product="Jockey-8_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVTLKICFWNANGISQHKYELLQFLDQYDIDAMLISE
FT                 THLTNKNYFHLNGYSFYKTNHPDGKAHGGTGILIKKRIRHYELPSFATTFL
FT                 QATSIHIDTQSGFLNLSAVYCPPRFSISEDEFVQFFNLLGDRFIAAGDYNA
FT                 KHPHWGSRLTNPKGRQLYNAIITPRNKLDLISPGKPTYWPTDPNKKPDLMD
FT                 FAVTRRVPRGHVHVEHLSDLSSDHSPILILLYDHPQLSKRTHLLTSSKTDW
FT                 LKYRKYVSTHIDGFPNMYQKEEIDSSVEALVSVMSLAAQHSTPTISACNFN
FT                 SNFSNSRASGHINELLRNKRRLRREWQAHRSPASKERLKTANYLLRTALED
FT                 ESNRSQLFYLQNLSPNSRRYPLWKAKSGICPPIESESPLHTQTGEWARSNE
FT                 ERANVFAAHLENVFKPLPSTNSFVLPTIITPEATLPIAFESREVTRVIEAQ
FT                 EKKKAPGHDLISPKMIMELPSCAVNLLTTIFNSMMKWGYYPQQWKKSVITM
FT                 IHKAGKDKSQPSSYRPISLLPCLSKIFEKLLLNRIKXHLQSHNAIPSHQFG
FT                 FREKHGTIEQVNRITAEIRNTFESREYCSAVFLDVAQAFDRVWLDGLIYKI
FT                 QNLLPQNTHKILESYLVHRSFAVRCKALRLPSNRSWSTSRKRAWTNAVYNL
FT                 HSRPSDNRPYNNFNICFIKFKICYHRTPTKYWSHILCIEVSQYGVKLSDYH
FT                 PIEAGVPQGSVLGPTLYIIYTADLPTTGLTITSTFADDTAILSRSKCPMRA
FT                 TQNLSAHLGLLEKWLADWRIKVNEQKCKHVTFTLNRQTCPPPSLNNIHIPQ
FT                 TTEVTYLGVHLDRRLTWRRHIEAKRTQLKLKARSLHWLINARSPLKLEYKV
FT                 LLYNVVLKPIWKYGSELWGNACVSNLEVIQRAQSKILRTITGARGTYEMKT
FT                 FTRI"
XX
SQ   Sequence 3459 BP; 1138 A; 833 C; 670 G; 814 T; 4 other;
     gccggaaacc ttgaaactaa aaaataatga agtccaccca atwtataagc ttcaatatct        60
     gctgcaccgt aggatcaccg ttgatgagcc ccacaagcgg aatgggcccg tgcaatgtat       120
     gaattgtcag gaatacggtc atacgaagac ttactgcact ctacgtgcag tctgcgttgc       180
     ctgcggagat gcacactcaa ctgaggcctg cccaataaat aaggataacc attctgcaat       240
     aaaatgtagt aattgtgggg gaaaccacac tgcaaattac agaggttgtc ctgtctataa       300
     agagttgaaa agtcgactag gccaacacat aactgcagct cgaaatcctg taacccgaaa       360
     cagttctcca tttatatcaa cgaccacgat cccgggagtc tcttttgcac aggctttaag       420
     taacaacaac ggggcgaacg ccacagtatc taaggtgaca gttcagcaaa ccactgctga       480
     tacagtgcgg caacaaatat tgaaccagac tccagaaact actggccaac atgcgaatgc       540
     aaatacacaa ttgcctaatg gcgtagaagc aatgttggta actataacca acacaatggt       600
     agcaatacag caaacgctgc aggaacttat gcgctctcaa aatctccttt tggagctatt       660
     aattaaacaa aaatcggttt agatggttac cttaaaaata tgtttctgga atgcgaatgg       720
     catttctcag cacaaatatg agctcttgca gttcctagat cagtatgaca ttgacgccat       780
     gcttatatca gagactcacc taactaacaa aaactacttt cacctaaatg gctattcatt       840
     ttataaaaca aaccatcctg atggcaaggc tcatggcggc actggcatac tgatcaagaa       900
     acgcatcagg cattatgagt tgccatcatt cgcaacaacc tttttacaag ctacatcaat       960
     acacatcgat acccaaagcg gtttcttaaa cctatccgct gtatactgcc caccacgctt      1020
     ctccatttcc gaagatgaat ttgtacagtt ctttaaccta ttaggtgacc gttttatagc      1080
     ggctggtgat tacaatgcga aacaccccca ttggggctct cgactcacca atccgaaagg      1140
     aagacagctg tacaacgcca taataacacc aagaaacaag cttgacctta tctctccagg      1200
     taagcctaca tattggccaa cagatcctaa caagaagcct gacctgatgg attttgccgt      1260
     cacaagaaga gtgcctagag gtcatgttca tgtggaacac ttatcagatc tttcatcgga      1320
     tcactcgccc attttaattc ttctctacga ccatccacag ctttctaaac gaacacatct      1380
     cctaacttcc agtaaaacag attggcttaa atacagaaag tatgtaagta cccatattga      1440
     tggcttccca aacatgtacc aaaaagaaga gattgacagc tcagttgaag cactagtgtc      1500
     tgttatgtca ctagctgctc aacactccac acctactata tcggcttgta attttaattc      1560
     taattttagc aacagtcgag cttctgggca tatcaacgaa ctgctacgca ataagagaag      1620
     gcttcggagg gagtggcaag cccacagatc gcctgcctcg aaggagcggc ttaaaacagc      1680
     caactatctt ctacgcacag ccctagaaga tgaaagtaat cgatctcaat tattctattt      1740
     gcagaatctc tcccctaaca gcagacgata tccactgtgg aaagctaaat cgggtatatg      1800
     tccaccaatc gaaagcgaat cgccattaca cacacaaaca ggagagtggg ctcgcagcaa      1860
     cgaagagagg gcgaatgtat ttgctgcgca tctggaaaac gtcttcaaac cgcttccatc      1920
     aacaaacagc tttgtgctcc caacaatcat cactccagag gctaccctgc ctatcgcatt      1980
     cgaatcaaga gaagtgacaa gagtgataga ggctcaggaa aaaaagaaag cgccaggaca      2040
     cgatctaatc tcccctaaaa tgattatgga attgccgagc tgtgcagtaa atcttctcac      2100
     cacgatattc aacagcatga tgaaatgggg ctattatcca caacaatgga aaaagtctgt      2160
     catcactatg atccataaag ctggaaagga caagtcccag ccttcatcat ataggccaat      2220
     cagtcttctg ccgtgcctat caaagatatt tgaaaagctt ctkctgaatc gtataaaaka      2280
     acacctgcag tcccacaatg ccatcccaag ccaccaattt ggtttccgcg agaaacacgg      2340
     aaccattgaa caagtaaacc gaataaccgc agagatacga aatacatttg aaagtcgaga      2400
     gtactgttcc gcagtctttc tggatgtcgc ccaggccttc gaccgcgttt ggttagacgg      2460
     cttgatttat aaaattcaaa atttgctacc acagaacacc cacaaaatac tggagtcata      2520
     tcttgtgcat agaagtttcg cagtacggtg taaagctctc cgattaccat ccaatcgaag      2580
     ctggagtacc tcaaggaagc gtgcttggac caacgctgta tataatctac acagcagacc      2640
     ttccgacaac cggccttaca ataacttcaa catttgctga tgatactgcc attctaagtc      2700
     gatctaagtg ccccatgaga gcaacgcaaa atctatcagc tcatctcggg cttttggaga      2760
     aatggctagc agattggcgc ataaaggtta acgagcaaaa gtgcaaacac gttactttta      2820
     cccttaatag acaaacttgc cccccaccat ctctgaacaa catccatatt ccacaaacaa      2880
     cggaagtaac gtatcttgga gtccaccttg atagacggct tacctggaga aggcacatcg      2940
     aagccaagag aacacaacta aaattaaaag caagaagcct acactggcta ataaatgctc      3000
     gctctccgct taaattggag tacaaggtac ttctgtacaa tgtagttctc aaaccaattt      3060
     ggaagtatgg ctccgagcta tgggggaacg catgcgttag taacctagaa gtgatccaga      3120
     gagcccaatc aaaaatacta agaacaataa cgggtgcccg tggtacatac gaaatgaaaa      3180
     cattcacaag gatttaaacg tgggatctgt taaagaggaa atcgacaaag waaaagcaaa      3240
     gtatacgatc aagctacagg ctcatccaaa caggctggcg cggtctttaa cgtggaacac      3300
     tagccacaca cgactccggc gaagagatct ccccacccag caacaatagc tagggccgtt      3360
     ttaccaaaat atatgtatta ggctaagatt tgaatacttg tcgttagtct cattgagaga      3420
     aggttcgata attaaatacc gtaattaaaa aaaaaaaaa                             3459
//
ID   Jockey-8_DMo repbase;    DNA;    INV; 5601 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila mojavensis.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DMo; telomere.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-5601
RA   Bao W.;
RT   "Non-LTR retrotransposons from the genome of Drosophila
RT   mojavensis.";
RL   Repbase Reports 20(10), 3189-3189 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           996..3752
FT                 /product="Jockey-8_DMo_1p"
FT                 /translation="MPKDANNSSPISVGRDEDFAAYVMTSAEEMDTAKIFA
FT                 NKRMDIGQYALPLFSPHLSPIPKPLKNAPKDATKDAPKKAAKTAPKKAPSE
FT                 ASKMADRKSLESGLEEGESLCSESTQHRRLSLRSLGRPLLTRETITHTHTQ
FT                 SHANMRNHPDDHAHTQPHSHESRSRSKQSHSTKPKPNNDDVTTRKQLNTMT
FT                 QQAVQMQQVQTNTKLTTATTNTSHATTTTTNAMTITTTHATTTTTNATTTH
FT                 ATTTNKTTTTNKTKTNATTSANSVARWLSHVPPYLPHELPQPFADAATATT
FT                 TTTAANHSQAHVQSPLKRRCNELDENDDATKLILNTPQFTSDFATRLIQER
FT                 RQQKLQQILQQDKQSYKKHKATSQHATNTTTSTQTKPSPQPKQIRVQAQIH
FT                 HVDDITTAPVSAPTAPPQHQQQQQQPINKDTVTKQRIPAIFLPLVTDVVPL
FT                 MDMLYKHPSVKGFSTKATGGAGRGLRIHCHDLDTYNAVLSVLQQEKLQLHT
FT                 HQPRQLKGYRVVLKHLHHSTPCDWLRVQLHALGFMTRFVRVMKHRFTSKPL
FT                 NLFEIELQPQPDGSHEAVLSLKQIGMQAVSVERMAKPIDPAQCHRCQAFGH
FT                 TKNYCRRPFRCMKCAGAHASTECPKGRDEAATCANCGGSHVSCFKGCPAFK
FT                 AARVKLLAAQATQAMRKQRQPQQQQQQQKQKQQLQQQQETNVQQVVNRKLT
FT                 YSSAARSKNNNNNTNDKDMQLQRQGQRQKTIRGNAIKTPLNKTKVTKTPAN
FT                 KATVTKNSKNTAQKHLAKLQHSLQRQQQQAATQSAKQNKAMFGRIEHKIDK
FT                 LLTVLDKLLNTLLTKTDNNAQTNAAANTSKTEQIQQTQQEQVPQVQQTQQQ
FT                 QVQVQQIQQEQTEQIAQTRRQPQHYPMVDLHELLGLDKKFETAMETSSSWC
FT                 TDGSVCSSSASEKHY"
XX
SQ   Sequence 5601 BP; 2276 A; 1259 C; 927 G; 1137 T; 2 other;
     catttaaaat taaataaaag tgtttttatt taaaacaaat taaaaaacat ctacatagct        60
     ctcaacggcg gcgaattaaa taaaattaaa gtgacaaaaa attttcacaa gtgaaaatcg       120
     gccatcttgt gcgcgtctat ggacataagt ataaaatgaa aaaattaaat atcttgcgaa       180
     tccttatttg aattaaaatg aaacaaaaag caaattaaaa acaataaaag ctgcgaatta       240
     tgtgctaaaa caaaataaaa attcaaataa aacttacctt cttttacaat atctaaaagt       300
     ggccattact atgtgcatag ttacatatgt acatacatag aaatataaaa ttaaacgcaa       360
     ctaattattt cttatttgaa acaaaataaa acttaaacta taatattaaa caactaaatc       420
     cacgttgact acaacaaatt aaaacaaaat tcaaataaaa ttaaataaaa atataacaac       480
     tcaaaaagtg gccatttcta tgtacatacg tgcataagta catacatata taaaatcaac       540
     taaaactaac gagttttatt taaaacgaat taaaacctaa actacaatat taaacaacaa       600
     aaactgtgat aactacaaca aaataaaatt aaattcaaat aaaaataact aaaacataac       660
     aactttaaaa gtggccattt ctatgtgcat acacacatac acacatgcac atatatacaa       720
     cacaaccaaa tttaacgagt tttataacta aaataaaaca aattaaaagc aactaaacta       780
     caaatgtgtt aatatctacg tgttagtgtt gtttttatat gttaaatgtt aagtgttagt       840
     aatgttaaac atattaaaat aatacaaaac ggccactaag tgtaaactaa aaacacacac       900
     agacaaagtt aataaaacaa agactacaaa taatcaacaa aaacaccaca aaaactacat       960
     acaacaaaat ttacacacaa caaaaactac acaagatgcc aaaagacgcc aacaactcgt      1020
     cgccaatctc agtgggccgg gatgaagact tcgccgccta cgtcatgacc agcgcagagg      1080
     agatggacac agcaaagatc ttcgccaata agaggatgga tattggtcag tatgcactcc      1140
     ctctattctc tcctcatcta tcccctatac ccaagccact aaaaaacgcg ccaaaagacg      1200
     cgacaaaaga cgcgccaaag aaggcggcaa aaaccgcgcc aaaaaaggcg ccaagcgagg      1260
     cgtcgaaaat ggccgatcgc aagtcactcg agagcggcct ggaggaagga gaaagcttgt      1320
     gcagtgaaag cactcaacat aggcggctct ctctccgcag cttgggtcgg ccattgttaa      1380
     caagagagac tatcactcac actcacactc aatcacatgc aaacatgaga aaccaccccg      1440
     acgatcacgc tcacactcaa ccacactcac acgaatcacg ctcacgctca aaacaaagtc      1500
     actcaactaa accgaaacca aacaacgatg acgtcactac gagaaaacaa ctcaacacta      1560
     tgacacagca agcagtgcaa atgcaacaag tacaaacaaa cactaaactg actactgcta      1620
     cgacaaatac atcacatgca actacaacta caacaaatgc tatgacaatt acaactacgc      1680
     atgcaactac aactacaaca aatgctacaa ctacacatgc aactacaaca aacaaaacaa      1740
     ctacaacaaa taaaactaaa acaaatgcta caactagcgc gaattcagtg gcaagatggc      1800
     tgagccatgt gccgccatac ttgccacatg agctgccgca gccattcgct gacgctgcca      1860
     ccgctactac aacaacaaca gctgccaatc acagccaggc tcatgtgcag tcgccactca      1920
     aacgacgatg caatgagctt gacgaaaacg acgatgccac aaagttgata ttaaacacac      1980
     cacaattcac aagcgacttt gctacacgtt taatacaaga aaggcggcaa caaaaactac      2040
     aacaaatact acaacaagac aagcaaagtt acaaaaaaca taaagctacg tcacaacatg      2100
     caacaaacac cactacgtct acacaaacaa agccatcacc acaaccaaag caaatacgtg      2160
     tacaagcaca aatacatcat gttgacgaca taactacagc ccccgtctct gcccctacag      2220
     ctccacccca gcaccaacaa cagcaacaac agccaataaa caaagataca gtcaccaagc      2280
     aaaggatacc agctatcttt ttgcctctgg tgactgatgt agtgccactg atggatatgc      2340
     tttataagca tccatcagtg aaaggattca gcactaaagc tactggtggt gctgggcgag      2400
     gactacgtat tcactgccat gaccttgata catataatgc agtactgagt gtactgcagc      2460
     aagaaaagct gcaactgcac actcaccagc cacgccagtt aaaaggctat cgagtggtgc      2520
     taaagcactt gcaccactcg acaccttgcg actggttgag ggtgcagttg catgctctgg      2580
     gcttcatgac gcgtttcgtg cgcgtcatga agcacagatt cacatcaaag ccactcaatc      2640
     tgtttgagat tgagctccag ccacagcctg atggcagcca tgaggcggtg ctcagtctca      2700
     aacagatcgg tatgcaagca gttagtgtgg agcgtatggc caaacccatc gatccggccc      2760
     agtgccatcg atgtcaagcg tttggccata cgaaaaacta ctgtaggcgg ccatttagat      2820
     gtatgaagtg tgcgggagca cacgcatcca cagagtgccc aaaaggcagg gacgaggcgg      2880
     caacatgtgc aaactgtggg ggttcacatg ttagctgctt taaaggctgt ccggccttta      2940
     aagcagcgcg tgtgaaactg cttgccgccc aagccacaca agcaatgcgc aagcagaggc      3000
     agccacaaca gcaacagcaa caacaaaagc aaaagcagca actacaacaa caacaagaaa      3060
     caaacgtgca acaagtggtc aacagaaaat tgacctatag cagcgcagcg cgtagtaaaa      3120
     acaacaacaa caacacaaat gacaaagaca tgcaactaca aagacaagga caaagacaaa      3180
     agacaatacg cggaaatgca ataaaaacac cactaaacaa gacaaaagta acaaaaacac      3240
     cagcaaataa ggccacagtg acgaaaaaca gcaaaaacac agcacaaaaa cacttggcca      3300
     aactacaaca ttcactacaa agacaacaac aacaggctgc aactcaatcg gccaaacaaa      3360
     acaaagcaat gtttggccgc attgaacaca aaattgataa attattgact gttttggaca      3420
     aattactcaa tacactactg accaaaacag acaataacgc acagacaaat gcagcagcaa      3480
     atacaagtaa aactgaacaa atacagcaaa cacaacaaga acaagtacca caagtacaac      3540
     aaacacaaca acaacaagta caggtacagc aaatacagca agagcaaact gaacaaattg      3600
     ctcaaacaag gcggcagcca caacattatc ctatggtgga cctccacgaa ctcttgggcc      3660
     tggacaagaa gttcgaaacg gcgatggaga cgtcatcaag ctggtgtact gacggctcag      3720
     tctgttcctc gtcagccagc gagaaacact actgaccgtt aatgcaccag ccggatccaa      3780
     aatgaagatg acgactacat gcagcagcaa caacaatgac gacgatcagc taataatcta      3840
     aaaagaatga catattaata aataaataca ccaaaaaaca aagtaaaact acgcaaataa      3900
     tcgacgatac gcatacaaac acacttgacg actcagggat aatccaacga aatacaactc      3960
     gcctcagtgt catgctgaaa ataaaaaaaa aataaacaaa ttaataatgc taacaatgct      4020
     tccacttacc tgacgaccaa ggacaattct tcaacgatgc caattcgcac ctgcgccact      4080
     cactgacagc taacacatca attgacgagt aatactacat acatcaaata tgtacaaaat      4140
     tacttgacaa ttgactaatt aaccacaatg gacgccagta gaacgcagac gaactgaaat      4200
     aaaacgaaga aattaataaa caatgtaaaa aatacatata acgtatatgt aaatacttac      4260
     ctgccacctt gggataacac caatacatca gcttcaaaac gagacactcg ccagtcctgg      4320
     caaaaatctg gatggacgac aatcgccttc gataaattta tcgaaaatcc ctgaagagcc      4380
     actaactgca tataaaatgc aaaactatac atatttgtat gcgacttttt actgaccatg      4440
     gcaatgtcaa gccaaaacaa actgactgtc aataaattag ctgaaaaaat aagaaaaaag      4500
     gctgaaaata aagaaaaaag ttaaaaaagc ttcaaaaaaa aaggccaaaa aatgttaaaa      4560
     acaaaaaata actatggaga aaaaaaaaaa aaaaaaaaaa aaaaaaaaga taaataaaaa      4620
     aaaaaaaaaa aaaaawtttt taagctgaaa aagaaaatag ctgaaaaaaa taagaatata      4680
     tgctgccaat aaatatgaaa aaaaaaaaaa ttcttatata cttacctgat cgccattggg      4740
     gtccactaat ctgaaaaaaa aagaaaaaaa aattaccaaa aatattaatt tacttacctg      4800
     attgccgatg ccattggggg tcctctaatc tgaaaagaaa aaagaagaaa atattaatat      4860
     ttcaattttc aactcaccac tacatagatg gagagggtat gcgccagccg gcgcatgcca      4920
     gtgattgacg ccagtgctcc atggatgcac actggccacg cactaacgct taatggctgc      4980
     caatccggac gacgagctgc gcgggacgca cgctttccac tgatgacaac gtatgcagcc      5040
     gcacactgaa aaaaaacgaa ccacaagcca ttatcagcgt tagacgacaa caagagggct      5100
     acttatctga cgagctgcga ccattccagc gacgaagaag gatgtccatg atgactgcca      5160
     ccaatgtacc tgcaaaatag aataagttaa tattaagtta atgtttaatg tatttatgtt      5220
     gaatgttaat ttattattgt tcttattgta actaaatgta attgtctttt gccattatgt      5280
     atgttaaaca tgtgagttag tgatgtaaat tgcatgtaaa tattgtaact attatcgata      5340
     gctgtaacta ttgttaagtg tataattagc gtcactaagt taatcgcacg agtgactacc      5400
     ggattttaac ccattcaact taacaagtgc ctgaagatgc tgtgaatccg actcacacca      5460
     tagttgctca cccgagtaat aagttgagtg tcgcgagcgt gawcggacgc acaccgctga      5520
     gcgcgaggcc ggcgggcaat tagagtagtc tgactttgta aaattacact aagccaagac      5580
     tgcggtgaat aataaaaaaa a                                                5601
//
ID   Jockey-8_DPer repbase;    DNA;    INV; 3338 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.08, Created)
DT   10-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3338
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1658-1658 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Tandem array, likely telomeric. Unit
CC   termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           800..3337
FT                 /product="Jockey-8_DPer_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSASLPPANAGGDGNWFDMKRDYQFSSQDEHNRNNIP
FT                 HISLAPTREDSIQMCTIAAKIKNHQTINIGAIYCPPAHEWIDTQFKQVFDS
FT                 LGSRFIVAGDWNAKSQWWGNARSCRRGAALLKCIQENDQSILATGSPTHFP
FT                 SNRRHMPSAIDFAVYKGIRHNLIHIETSYDLGSDHNMQIIKLLLRPEYGKK
FT                 KILLPKNANIRRFQAHLEQRIHLETELHNGDDIDDAVAILEKNIYIAAELA
FT                 SQTSSNQHTVYGPQNFHLDSQTLKAIKIKRILCKINQKDRCSNPLIARTIN
FT                 QLTNRIRKRIKLQKDKQMNRLLHDIDPTDRYSMQKLWRLTNTIKRQPIPNL
FT                 PVRRHVAEGQQAPADPGCKTTEEKAEAFAQHLEARFTPKITAALEDREEIN
FT                 AVLQENGPDEAAQIIRPVTIQELKSEIKKLKTKKAPGLDSIDNRVIKSLPT
FT                 SAIEYLLLICNSALQFGHFPKSWKCAKISMLRKPGKPSDRLESYRPISQLT
FT                 GFSKILERLILKRLFEEESFAMAIPNHQFGFRSQHSAEQQIGRVTQFILRS
FT                 YEAQRHCSAVYMDIQEAFDRVWHQGLLCKVKTIIPDNLYILLTSYLSDRSF
FT                 KVVCCNNITSSLKHITAGVPQGSVLGPVLYNLYTADMPQPPRHANSTQMLA
FT                 TYADDAVYLVSALSPKQANENVERLLADALSWSKKWGITISLAKTAHVLHT
FT                 LSPVQQHTPAPRLAGQLLAXKSVMPYLGIHMDTKLNFNKHVAAIVTKTRAR
FT                 IKKLDWIIGRNSKLPLPPKVLLYKQLIAPIWQYALPVWGPLTSSMQMAKLQ
FT                 TIQSKALRAMXNAPRYVSNNALHADLQVATVEEVYNRLCRNCYT"
XX
SQ   Sequence 3338 BP; 1101 A; 867 C; 676 G; 692 T; 2 other;
     ggctaatgca gcacacaaat ttacttgcct gtgagatcgc aacgcaccca tacagtccaa        60
     gaaggctggc caggccaagg tatgccgcaa tgatagaaga gcacaatcca aacagcaaca       120
     gaagcctgac agccatccaa acaatactgc tccaagtcag acgcgagaac tggctgcgca       180
     atccatttgc aacacacaat atggaaatca gccgcagtag cgctaatgca gctgctacgc       240
     aggcaaatga cggccccagc agagaacctg atgatggacg gcggcagctc cagaatccag       300
     atgatggcgg cggctgaaaa gaaactaaaa acctttttat tcttccacag atacgaagcc       360
     acttcacctt cacagaaatt ggtaatccac atccagaatg acgatgcact ggacctcggc       420
     cagcttcagc cctgttgatg ctgtcctgca gtcacagttt agcgccgaca ctcgcaagga       480
     ttccacttcg cagccgacga cgagaccaat aggcgtaatg atgttcttca cggctgcata       540
     ctccacctga aataattaaa aacaaaaaca atgtaaacaa agtagcaata agtttagtgt       600
     taccctggca tttagccaaa ttatcgatag ctactaaaaa aaaataaata ccaaataagc       660
     caataccgta agaaatgtta ccctgccaat ttacagccac ttctgcaact acatgtaatg       720
     tagataagca gttggcgcga aacaatttgt aaaatatgct aattataaga gtataaacaa       780
     ataaaacggt tctctcttca tgtcagcctc cctgccccct gctaatgcag gtggcgatgg       840
     aaattggttc gacatgaaga gagactacca atttagttcg caagacgaac acaacagaaa       900
     caacatcccg cacatttccc tcgcaccaac aagagaggac tccatccaga tgtgcaccat       960
     agctgcaaaa ataaaaaacc atcaaacaat aaacattggt gcgatctatt gtccacctgc      1020
     acacgaatgg attgatacac aatttaaaca ggtatttgac tctctgggta gcagatttat      1080
     cgtagctggg gattggaacg ccaaaagcca gtggtggggc aatgcaagat cgtgtagaag      1140
     aggggctgca cttctgaaat gcatccagga aaacgaccaa agcatactgg ccactggatc      1200
     ccccacccat ttcccttcaa atcgacgaca tatgccgtct gctatagact ttgcggttta      1260
     taagggtatc agacacaatt taattcacat tgaaacatca tatgacttag gttcagatca      1320
     caacatgcaa atcattaaac tcctcctgag acctgaatat ggaaaaaaga agatactatt      1380
     accaaaaaat gcaaatatca gaagatttca agctcaccta gaacagcgaa tccatctgga      1440
     gactgaactt cacaacggcg acgacataga tgatgcagtg gctatccttg aaaagaacat      1500
     ttacattgca gctgaattgg cttcgcaaac ctcaagtaac cagcacacag tgtacggacc      1560
     gcaaaacttt catcttgact cgcaaacgct gaaagcgatc aagatcaaaa gaattctctg      1620
     caaaatcaac caaaaagata ggtgctccaa ccccctcatt gcacgcacta tcaatcagct      1680
     gactaacaga atacgtaaac ggatcaagct acaaaaagac aaacaaatga acagactgct      1740
     acacgacatc gacccaactg ataggtacag catgcagaaa ctatggcggc tcaccaacac      1800
     aatcaagaga cagcccattc caaatctgcc agtcagaagg cacgtggcgg aagggcagca      1860
     agctcctgct gatcctgggt gcaaaactac ggaggaaaaa gctgaggcct ttgcgcagca      1920
     cctggaagca cgtttcacgc caaagatcac ggcagcccta gaagacagag aagaaattaa      1980
     cgcagtatta caagaaaacg gtccagatga agctgctcaa ataatcagac ctgtgaccat      2040
     ccaggaactc aaatcggaaa ttaagaagct caagacgaaa aaggcacccg gtctcgacag      2100
     tatcgacaat cgcgtcatta aatctctgcc aacatccgcc atcgagtatc tgctgttgat      2160
     atgcaactcg gctctgcagt tcggccactt cccaaagtcc tggaaatgcg caaaaatctc      2220
     tatgttaagg aaaccaggaa agccgagtga taggcttgag tcctacagac ccatcagcca      2280
     gcttacaggc ttctccaaaa tccttgaacg cctcatcctc aagcgactct ttgaagaaga      2340
     aagctttgcc atggctattc caaaccatca atttggcttc agaagtcagc actcagcgga      2400
     acagcaaatc ggacgagtca cgcaatttat cctcagatcc tacgaagcgc agcggcattg      2460
     cagtgctgtg tacatggata tccaggaagc ttttgataga gtctggcatc agggtcttct      2520
     ctgcaaagtt aaaacgataa tacctgacaa tttatacatt ctactcacca gctatctctc      2580
     agacagaagc ttcaaagtcg tctgctgtaa caacatcacc tcaagcctaa agcacataac      2640
     cgctggagtg ccgcaaggaa gcgtacttgg cccagtgctc tataatcttt acactgccga      2700
     catgccgcag ccaccaagac acgcaaactc aacccaaatg ctagcaacgt acgctgatga      2760
     cgcagtatac ctcgtatctg ccctaagtcc aaaacaagcc aacgaaaatg tggagcggct      2820
     cctggctgat gcattatcat ggtctaagaa atggggaata accatcagtc ttgcaaaaac      2880
     tgctcatgtt ctacacactc tctcacctgt gcagcaacac actccagctc caaggttagc      2940
     cgggcaactc ctggccaawa aatccgtcat gccatacctg ggaatacata tggatacgaa      3000
     gctcaatttc aataagcatg tagcggctat tgtcactaaa acaagggccc ggatcaaaaa      3060
     gctcgactgg atcatcggca gaaacagtaa actcccacta cctccaaagg tcctcctcta      3120
     taagcagctg attgccccaa tatggcagta tgccttgcca gtctgggggc cactgacttc      3180
     aagcatgcaa atggccaagc tccagacgat ccaaagcaaa gctctcagag caatgwcaaa      3240
     tgctccccgg tatgtgagca acaacgcact gcatgcggat ctccaagtag caactgtgga      3300
     agaagtttat aacagactct gcaggaactg ctacactc                              3338
//
ID   Jockey-8_DRh repbase;    DNA;    INV; 3455 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3455
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1685-1685 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. The consensus is ~92% identical to
CC   that of Jockey-8_DF.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           47..745
FT                 /product="Jockey-8_DRh_1p"
FT                 /translation="MFKVELEPESMHLKNNEVHPIYKLQYLLHRRITVEEP
FT                 HKRNGPVQCMNCQEYGHTKTYCTLRAVCVACGDAHSTEACPINKENHSAKK
FT                 CSNCGGNHTANYRGCPIYKELKSRLGQHIIAARNPVTRNNYPYIPSTTTPG
FT                 VSFAQALSYNNGTYASAAKLTGQQTTADTVRQPILNQNPETTGQHTTANTQ
FT                 LPNGVEAMLVTITNTMVAIQQTLQELMRSQNLLLELLIKQKSA"
FT   CDS           749..3319
FT                 /product="Jockey-8_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVSMLISETHLTNKNYFHLNGYTFYETNHPDGKAHGG
FT                 TGILIKKRIRHYELPSFATACIQATSIHIDTRSGFLNLSAVYCPPRFSISE
FT                 DEFVQFFDLLGDRFLAAGDYNAKHTHWGSRLTNPKGRQLYNAIITPRNKLG
FT                 LISPGKPTYWPTDPNKKPDLIDFAVTRRVARDHVHVEHLTDLSSDHSPILL
FT                 HLYDHPQLSERIYVLTSRKTDWLKYRKYVSTHIDGFPNMYQKEEIDSSVEE
FT                 LVSVMSLAAQHSTPIIPACNPDNNCRASGHINELLRNKRRLRREWQAHRSP
FT                 ASKERLKTANYLLRTALEDESNRSQLSYLQHLSPNSKRYPLWKAKSGICPP
FT                 IESESPLHTQTGEWARSNEERANVFAAHLENVFKPLPPTNSFVLPTNIFPE
FT                 ATLPIIFQSREVIKMIRAQEKKAPGHDLISPKMIIELPNCAVNLLTTIFNS
FT                 MMKLGYYPQQWKKSVITMIHKAGKDKSQPSSYRPISLLPCLSKIFEKLLLN
FT                 RIKQHLQSHNAIPNHQFGFREKHGTIEQVNRITSEIRNTFENREYCSAVFL
FT                 DVAQAFDRVWLDGLIYKIKTLLPQNTHKILESYLEHRSFAVRCKDFLSEYH
FT                 PIEAGVPQGSVLGPTLYIIYTADLPTTSLTTTSTFADDTAILSRSKCPIRA
FT                 TQQLSAHIGLLEKWLADWRIKVNEQKSKHVTFTLNRQTCAPLSLNNIHIPQ
FT                 TTEVTYLGVHLDRRLTWRKHIEAKRTQLKLKARSLHWLINARSPLKLEYKV
FT                 LLYNAVLKPIWKYGSELWGNACVSNLEVIQRAQSKILRTITGAPWYIRNEN
FT                 IHRDLNVGSVKDEIDNVKAKYTIKLQAHPNRLARSLTWNTSHSRLRRRDLP
FT                 TQQQ"
XX
SQ   Sequence 3455 BP; 1165 A; 824 C; 644 G; 822 T; 0 other;
     caaacaggtt aggaatatat taaataaaaa caaagttcca cagccaatgt tcaaggtaga        60
     gttggagccg gaaagtatgc acttgaaaaa caatgaagtt cacccaatct ataagcttca       120
     atatctattg caccgtagga tcaccgttga ggaaccccat aagcggaatg ggcctgtgca       180
     atgcatgaat tgtcaggaat acggccacac gaaaacttac tgcactctac gcgcagtctg       240
     cgttgcctgc ggggatgcac attcaactga ggcctgccct ataaacaagg agaaccactc       300
     tgccaaaaaa tgtagtaatt gtgggggaaa ccacactgca aattacagag gttgtcctat       360
     ctataaagag ttgaaaagtc gactaggcca acatataatt gcagctcgaa atcctgtaac       420
     ccgaaacaat tatccatata taccatcgac cacgaccccg ggagtttctt ttgcacaggc       480
     gttaagttat aacaacggga cttatgcctc agcagctaag ctgacaggtc agcaaaccac       540
     tgctgataca gtgcggcaac caatattgaa ccagaatcca gaaactactg gccaacatac       600
     aactgcaaac acacaattgc ctaacggcgt agaagcaatg ctggtaacta taaccaacac       660
     aatggtagca atacagcaaa cgctgcagga acttatgcgc tctcaaaatc tccttttgga       720
     gctattaatc aaacagaaat ctgcttagat ggtttccatg cttatatcag agactcacct       780
     aacaaacaaa aactattttc accttaatgg ctatacattt tatgaaacaa accatcctga       840
     tggcaaggct catggcggta ctggcatact gatcaagaaa cgcatcaggc actatgagtt       900
     gccatcattt gcaacagcct gtatacaagc tacatcaata cacatcgata ccagaagcgg       960
     tttcttaaac ttatccgctg tatactgccc tccacgcttt tccatttccg aagatgaatt      1020
     tgtacagttc tttgacctat taggtgaccg ttttttagcg gctggtgatt acaatgcaaa      1080
     acacacccac tggggctctc gactcaccaa ccccaaagga agacagctgt acaacgctat      1140
     aataacacca agaaacaagc ttggtcttat ctctcctggt aagcctacat attggccaac      1200
     agatcctaat aagaagcctg acttgattga ttttgccgtc acaagaagag tggctagaga      1260
     tcatgtccac gtggaacact taacagatct gtcatcggat cactcgccaa ttttacttca      1320
     tctctacgat catccacagc tttcagaacg catatatgtt ctaacctccc gtaaaacaga      1380
     ttggcttaaa tacagaaagt acgtaagcac ccatattgat ggcttcccaa acatgtacca      1440
     aaaagaagag attgacagct cagttgaaga actagtgtct gttatgtcac tagctgcaca      1500
     acactccacc cctattatac cggcttgtaa tcctgataac aactgtcggg cttctgggca      1560
     tattaacgaa ctgctacgca ataagcgaag gcttcggagg gagtggcaag cccatagatc      1620
     gcctgcctcg aaggagcggc ttaaaacagc aaactatctt ctacgcacag ccttagagga      1680
     tgaatctaat cgatctcaat tatcctattt gcagcatctc tccccaaaca gcaaacgata      1740
     tccactgtgg aaagctaaat caggtatatg tccaccaatc gaaagtgagt cgccattaca      1800
     cacacaaaca ggagaatggg ctcgcagcaa tgaagagagg gcaaatgtat ttgccgcaca      1860
     tctagaaaac gttttcaaac cactcccacc aacaaatagc tttgtgctcc caacaaacat      1920
     ctttccagag gctaccctgc ctatcatatt ccaatcaaga gaagtgataa aaatgataag      1980
     ggctcaagaa aaaaaagcgc caggacacga tttaatctcc cctaaaatga ttatagaatt      2040
     gccgaactgt gcagtaaatc ttctcaccac aatattcaac agcatgatga aattgggcta      2100
     ttatccacaa caatggaaaa agtctgtcat cactatgatc cacaaagccg gaaaggacaa      2160
     gtcccagcct tcatcatata ggccaatcag tctcctgccg tgcctatcaa agatatttga      2220
     aaagctgctc ctgaatcgta taaagcaaca cctacagtcc cataatgcca ttccaaacca      2280
     ccaatttggt tttcgcgaga aacacggaac cattgaacaa gtaaaccgaa taacctccga      2340
     gatacgaaat acatttgaaa atcgagagta ttgttccgca gtctttctgg atgtcgccca      2400
     ggccttcgac cgcgtttggc tggacggctt aatttataaa attaaaacct tgcttccaca      2460
     gaacacccat aaaatactgg agtcatatct tgagcataga agtttcgcag tgcgatgtaa      2520
     agatttcctc tccgaatacc atccaattga agctggagta cctcaaggta gcgtgcttgg      2580
     accaacactg tatataattt acacagcaga ccttccgaca accagtctta caacaacctc      2640
     aacatttgct gatgatactg ccattctaag tcgatctaag tgccccataa gagcaacgca      2700
     acagttatca gctcatatcg ggcttctaga gaaatggcta gcagattggc gcataaaggt      2760
     taacgagcaa aagagtaaac acgtcacctt taccctaaac agacaaactt gcgccccact      2820
     atctctgaac aacattcata ttccacaaac aactgaagta acatatcttg gagtccacct      2880
     tgatagacgg cttacttggc gaaagcacat cgaagctaaa agaacacaac ttaaattaaa      2940
     agcaagaagc ctacattggt taataaatgc ccgttctccg ctaaaattgg agtacaaggt      3000
     acttctgtac aatgcagttc tcaagccaat ttggaaatat ggctccgagc tatggggaaa      3060
     cgcatgcgtt agcaacctag aagtaataca gcgagctcaa tcaaagatac tgagaactat      3120
     aactggtgca ccgtggtaca tacggaatga aaacattcac agagatttaa atgtgggatc      3180
     tgttaaagac gaaatcgaca atgtaaaagc aaagtatacg atcaagctac aggctcatcc      3240
     aaataggctt gcgcggtctt taacctggaa cactagccat tcacgactca ggcgaagaga      3300
     tctccccacc cagcaacaat agctagggcc gttctcctaa aaaacttaat tttaactaat      3360
     taaatttatg tattaggcta agatttgaat acttgtcgtt agtctcgaag agagaagatt      3420
     cgataaataa aaataccgta attaaaaaaa aaaaa                                 3455
//
ID   Jockey-8_DTa repbase;    DNA;    INV; 5054 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   12-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5054
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5907-5907 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 5054 BP; 1548 A; 1291 C; 1007 G; 1204 T; 4 other;
     ctcagtctcg atcatgcttt cgtggagtgc agacgcgttt ttgcatcgct gcgaaattct        60
     ttgtgaagag cctatggaca agtccacctt cgtggcaatt caatttgttt ttgtaaacca       120
     gacagctaaa gctgcagtga cagtgctcag acgctccatt agctgtgttt tttcgcgaaa       180
     acaagtgaaa cagaatctga taaccaacag ttgcaatctg ttgtttatgc aaattaccgc       240
     tatttcgaat ccaaattcga actcaaattt ggatagaaat ttattcaaaa taaaaataaa       300
     atatagatct ccacaactgg gaattgaacc cagtaccttt cgcctgcaag gctcacacct       360
     tgcccactag gccacgtctg cctacgtgga acctgcacaa tagtgcattg tgtacaggag       420
     gtcggtaaag cagtgcaaag cagtgcatat catccaatat gtcggattcc gacgactttg       480
     acatccgagc aaaggtggct cagaataata aaattatgat caatgcatta aacgcgtcac       540
     taaatagatt taaccagcag tataatgcca aaacttccaa cgctcaatcc ttaccaaccc       600
     aggacgtaga accagagcta gaagcactcg tcggcgacga tgaagactgg tggaccccgc       660
     gtagtagcaa acgccgtcca gagtctaggt ctcccaattc cgccaataaa atcctcagaa       720
     attcaaacag ccccaaaacg actcaatcca ccaaccgatt ctctgaactt tctgacatgg       780
     atacaaccga cgaacataac gacgcggatg tccttctgtt gaggaacaac cctgaccagg       840
     ctagtaccag tactggcata agccatgtta atctcaactg caacaaccaa agcgatctca       900
     ctaacagtaa cattaacaat aatctaaaca atagcaacgt caacataacc aataacccac       960
     ccgaccacaa gccacctcca attgtaataa ataattgcga gaatataaac ggacttatcc      1020
     ggtctacaga taagatcgtt catccttcca aatactctct aaaatgcctc ccaaacaatt      1080
     cagtttcgat ccttgctgct gatccagaca cgtatagagc tataaccaaa gctctaattg      1140
     caaagaaggt cccgttccac tcctggcagc tcaaagagga aagatcctat cgtgtggtta      1200
     ttcgaggtgt tcatcactcc attccggatg aagatataaa ggaaagtcta actctgctcg      1260
     gccatattgt tcgctttatt aatagaccta gaatgcgctc tgacaaatca aagtttgtca      1320
     accttgtgtt tgttgaacta gaaccatctg caagcaacaa ggaaatattc gaaataaaga      1380
     ctctatgtcg ccagcgggtt gtagtggaaa ctccctacaa aaagaatgaa gtcgtccaat      1440
     gccatcgttg ccaagacttc aaccacacaa aaaataactg tttcctggac cataactgtg      1500
     taagatgtgg acagaaacat tccatacagg actgcgagcg agatactcac ccagtaaagt      1560
     gtgtgaattg tggggaaaac cacacagcta attacaaggg ctgtattgtt taccagcaga      1620
     aactaaatag gcgtaaaaat catccatcga atcgtaacac ccctcctcaa caaaactctg      1680
     caccacggac gactgctcga tcagatgtca atggagcacg gtcttatgcc aatgtcgcca      1740
     acggtccttc ccggcagcaa gcccaacagg ttagacgacc ccagctgcag catcaggacc      1800
     aatttcctcc attaggaacg aacaacagga ggcctaatca gcaacaactc catcggtcgc      1860
     agcaacaaga aacaccaaat gcagctccta acctacagca acaccaaggt tcccgccaac      1920
     aacatcagca acggccctta cagcagcaac gtcatcggga ttttcagcaa caccaaaacg      1980
     aaaagcaatg gaaccgacaa gagcaaatct tcttacaatc tgaagataaa atgtcagacc      2040
     tcttggcccg atttgacaaa atgttcgaga tggttatgtc aatgatgtcc ctcatagcca      2100
     aattccttcc ccaaatagcg ccaggatctg ctcaagcagt ctctggactc ctttctggtc      2160
     ttacagtcca accatgagtc aaattggact caaaatcggt gtgtggaacg ccgacggttt      2220
     ggccagcaag gcactcgaga tggagctttt tgtaaagcaa catcaaatcg atgttatgtt      2280
     ggtcagcgaa acacatttct gctccagatc ttactaccag ctgcggggat acgacgttca      2340
     actagctaat catcctgctg atcgccatcg cggaggctct gccattatca ttaagtcatg      2400
     cctgcaatat tatcaattcc taagtgtgga atatcaaaca gctcaatgcg ttgcagtcaa      2460
     agtcaaaact gaccaagggg aaattgtcat tgcgtctata tactgtccac caaactccca      2520
     actatcttct gaagattatg agcagctatt tgacgagcta ggcccaaatt tcctaatcgc      2580
     tggggattgg aatgcacacc atcgtctctg gggatctcga aactcttcta ataggggcag      2640
     agctctagca gatctcatat actcgtctaa tatgcagatc cttgccactg gaggaccaac      2700
     acattaccct tacagtcaac gcacaccatc agcaatagac ttcgccatct tcaaaggaat      2760
     tcgctccgag tgcctaaaca tttcggaaag ctttgacctg agttcggatc acatccctct      2820
     tataattcag tacagaattg ctgcatgtaa gctctcccgg aggacttgca tcttgcccca      2880
     gaatgcgagt ataccgcgat tccaggaagc cattaacggc ttggtcaatc tcaacatgca      2940
     ccttaacact cctgaggaca ttgacgatgc tactgagatg tttgtgcgaa atattcacat      3000
     tgctgctgaa tcatccacct gcggccaaag cccaaacaat ccatccaatc cacctcaggc      3060
     acttttaaaa cctgaggtcc tggatctggt gacgttgaaa agggcattgc gtcgaagatt      3120
     tatgcgtaca cgggatcctg cggacaaaag agaatatcgt cgagctgaag acgatctaaa      3180
     aaagcttctg cacaaaacga agagtgatta ctttgccgaa ttgctccgca atgccgatcc      3240
     cacaaaacca tatggattca acctctggag agcaacaagg aaaataaaaa gacaaccccc      3300
     tcgtcgaatc ccaattaagc gtgctgacaa cacatggtgc agatcggaca ctgagatttc      3360
     gatggcgttt gctgatgagc tagaggagcg ctttcggcca tttagcctag ctaggtctga      3420
     agacgttgag gatacaatat cattcctaaa tgctccgtcc ccagctatcg aaccaattcg      3480
     tcatgtcagc ccggaagagg tttgtcttca aattcgcaag ctccatcgca gtaaagctcc      3540
     aggattcgac ggaattgaca gcaggattgc aaaggcgtta cccaagaaag gtattctgtt      3600
     cttagttctc ctctataact ccatgctgcg tatccaccac ttccccaccc aatggaagtg      3660
     tgctgtgata tcaatgatac ccaagccagg aaaaccggag aaccttgttg cgtcctacag      3720
     accaataagt ctgctgacta cwttctctaa aatattcgag agaatatttc ttagcagaat      3780
     gatggcagta agatgcgttc aggatgccat tccagaccac cagtttggct ttagaagtca      3840
     ccacggtacc cccgaacaag ctcatcgggt tacccagcac atcatagatg ccttcgaaaa      3900
     taagcagtac agttcggcaa tctttcttga cgtcaaggag gcctttgatc gwgtatggca      3960
     cgatggcttg cttttcaagc taaaaaccct cttgccaact gggcaatttc tcctcttaaa      4020
     atcctacctc aaagatcgaa acttcatggt tgaagtcaga ggcgaaagat caactattag      4080
     aagcatccga gctggagtac ctcagggtag tgtacttggc cccgtcctgt ataccctcta      4140
     caccgccgat ctgccaaatc ctcgagaacc kggtagtctc ttggcgacgt atgcagacga      4200
     tactgccttt atctscaact cagcatgccg tatcgaagcg tcccgaatga cacaaaactt      4260
     cctagatctg tatagcgaat ggacgaccag atggaatatt gctataaacg gaagcaagtc      4320
     ccagcattgc aacttcacgc taagaagtaa aatccttccc agggtcaatt tccaggacac      4380
     agtcatcccg caatcccccc aggcccagta tttgggattg atcttggaca agcgtcttac      4440
     gtggaggcag cacataacca aagtcgcagc cacttgtcgt gccaagcttc gaaagctgaa      4500
     ctggatgctt agaggaagaa gtacgctcag cctcagtaac aagatgttgc ttttcaagtc      4560
     tatcgttgtc ccatcgctca cttactgcat tcaaatatgg ggcactgctt cggattccaa      4620
     catcctgagg atacaaagaa tgcaaaacaa agctctgcgc acgatagcaa atgcaccgtg      4680
     gtacgtgcga aatgaggtcc tagccagcga cctgcacatt ccttcagtga gagagcaaat      4740
     caacatgcac tcaagccgct acaacgaacg actactagcc cactccaatc aattagctgc      4800
     atccttggca aacccaacca caagaagaag gctgaagcgt cgacaccctg gtgatctctg      4860
     gacaagagga cgccatcaaa cccgcgtcct gagacagtaa tgtagaactg tcaatgttat      4920
     aaaattgttc tttccacact catgttatgt ttccagttat ttgtttctat gttctaaatt      4980
     atgcgtttta taaccattaa gttggttgat caacgctata aataaaaata tgctatataa      5040
     aaaaaaaaaa aaaa                                                        5054
//
ID   Jockey-8_DVi repbase;    DNA;    INV; 4574 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.09, Created)
DT   09-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4574
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1949-1949 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           622..1506
FT                 /product="Jockey-8_DVi_1p"
FT                 /translation="MEVELNAEKEARVPRSRKPPPIFIENVNNVTQMEAEL
FT                 DAVIGSDSYTLHVGTQGKVRVHVENSNSYRSLVQFLKENNAHHFTYQLKED
FT                 KAFRLIVRNLASTTPEESIKEEFMRYGHSVLRIHNPRPRKVQQQENGEAIE
FT                 ELIQNNFFFIDLAREPNNKDALKIKQIGRQRVLVEIPKKNXNAILCHRCQG
FT                 FGHTKNYCMRPYICGKCARNHPTAQCKETLVENLCCINCGGNHEAWHKGCN
FT                 VFKARTQERRPKVSLGLKSNVSSKKDRQQHIPAILSARKFFVRRYSAYWAG
FT                 KVQ"
FT   CDS           1696..4428
FT                 /product="Jockey-8_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMHSSLSLGLWNARGISGHVEELKHFLTEHNIDVMLI
FT                 TETWLQAGVSIFIPGYKIHKADHPSDRARGGAAVLIKQEIEYSQNEPVRME
FT                 KLQMASIQIATSRGELTIASAYLPPQLSWSAMEFQQLFSGLGRMFLMGGDF
FT                 NAKNRCWGCFRANARGTCLLDAVQNLSSEILATGQATHFPFAQSYTPSAID
FT                 FFIYNGLHPDGLSIRPEFQLSSDHIPLVVGYDCIPKGKTIKGRLLPPGANI
FT                 AAFRRDLEETLDLNLEILAPEDIEDVYALFLNKVHSATLISAPVSRSEXSR
FT                 PQVRLPPAIHTLLLIKRRIRRQYCRTGDPVVDRIYRRVSNRVKKLLQLNRQ
FT                 TETDRFLENVSPDESSSHSLWRLTRRYKQQVTPKFPIRKPDGSWARSPKER
FT                 ADAFAEDLEDRFKPFNTSSASMNRRVQLTLESPGQLSLPVAPITANEVSDH
FT                 IAALKTRKAPGEDGIDNITLKALPVRAVLFLVLIFNAVLRLGHVPSQWKKA
FT                 RICMIHKAGKSPSSLDSYRPISLLPTIGKLFERCLLTRLLSMDRIKEKIPP
FT                 FQFGFRKSHGTPEQLNRVVNFILEGFEAKEYVVAAYLDIKQAFDRVWHDGL
FT                 LCKIKPLLPPQLYLIVQSYLTNRSFSVVXDGVESNMKAIGAGVPQGSVLGP
FT                 TLYTLFTYDMPTGSTIEVADPHDLTIATFADDTAVLSRNECVYEATDVLQQ
FT                 YLHKFEMWAKRWNIGINLNKCANVTYALRRDMCPGVFLRGQLVTHFNSHKY
FT                 LGVHLDRRLNFNKHITSVSVALKSRIGKLRWLLSSRNALSLKNKVTIYKSC
FT                 IAPAWRYGIQIYGIAAKSSLXKIRVLQAKTLRYLSGAPWYMRTSDLEKDLG
FT                 VPKVGDVINIQAANYIARLRNHPNRLARRLLNRRRIGGLRTRRRLRRSHPI
FT                 DLPDRFI"
XX
SQ   Sequence 4574 BP; 1470 A; 1015 C; 1012 G; 1063 T; 14 other;
     tgcmmcataa aatttattat atttcgtgaa aaattaataa gaaaaacaaa caacattgag        60
     ccaaacaaca ctgggcatgg atgttagtac atccgcgccc tctcaaccga gagagctgcg       120
     accagaattc gctaaaatga tgagaattgc tggcgctaca cctgcggaaa tcggaatgat       180
     ttccttaaat actgaagtgc ttcaaatact gcaattaatg cagtagtagc aattttgcgc       240
     aacgacatgc acttgacgtc gcaaactcaa ctacgcgtct acctacactg tcacaacttc       300
     aagtggagga gtgtgcacca ccccaaatat taactacaaa agtgtagttg caagcgaatc       360
     ggaaaataat atcaatgaac aaggaaagtc atcagtgaaa tcactcagct ggatgacgac       420
     caaaataaaa cgtaaactgc cttcaagctt tccaaaagca aacggtaaaa aagggaggtt       480
     aattgcatct cagatatcga cggacagacg tctaaaggag atcccaataa actcaaaaaa       540
     ccaatttgca ttactggata atgaagagaa cgatgaccta cagaggagga aatagcccat       600
     gccgaggcac tggcagaaga gatggaagta gagctgaatg cggaaaaaga agccagagta       660
     ccmagatcca ggaagccacc ccccatcttc atcgaaaatg taaacaatgt gacccagatg       720
     gaggcagagc ttgatgcagt cattgggtca gatagttata ccctccacgt tggaacacaa       780
     ggaaaagtaa gagttcacgt tgaaaactcg aactcttatc gtagtctagt gcagtttctc       840
     aaagaaaata atgcacatca ctttacatac caactgaagg aagacaaggc cttcaggctt       900
     atcgtccgca atttggctag caccacccct gaagaaagca ttaaagagga gtttatgcga       960
     tatggacaca gtgtccttcg tatccacaac cctcgtcctc gtaaggtcca acaacaggaa      1020
     aacggtgaag ctattgagga actgatccaa aataatttct tcttcattga tttggctcgc      1080
     gagcctaata ataaggatgc gctgaaaatc aagcaaatag ggcgacaaag agtcttggtt      1140
     gaaataccaa agaaaaattt kaatgccatc ctgtgccaca gatgccaagg atttggacat      1200
     acaaaaaact actgtatgag gccttatatc tgtggaaagt gtgctcgaaa tcatccaaca      1260
     gctcaatgca aagaaacttt ggttgagaat ctttgctgta tcaactgcgg tggaaaccat      1320
     gaggcttggc ataagggatg caatgtgttc aaagctagaa cgcaagaaag aagaccaaaa      1380
     gtaagtcttg gattgaaaag taatgtcagt agcaaaaaag accgtcagca acacattcca      1440
     gcaatcctta gtgcgaggaa atttttcgta cgccgatact ctgcgtactg ggctggaaaa      1500
     gttcaataaa gagacgtcaa ttaggaaccc tacccccaag caccaagaaa ccccacccca      1560
     cattagttca aggctggagg ccgcaataga agcactcact gtgaaagtcg acactctaca      1620
     agctatgttt aaggaacttc aggagacgaa tcagttcctt aaacaaatgt gtctgagtct      1680
     attgaacgcc aaaaaatgat gcacagttca ctaagcctcg gattgtggaa tgcccgtggt      1740
     atctctgggc atgtggagga gcttaagcac ttcctaactg aacataatat tgatgtgatg      1800
     ctaattacag agacctggct acaggccggt gtatccatct ttattccagg ctacaaaatt      1860
     cacaaagcgg atcatcctag cgatagagca agaggaggag cggcggtgct tattaagcag      1920
     gagatcgaat attcccaaaa tgaaccggta aggatggaga aattgcaaat ggccagcatc      1980
     cagattgcaa ctagcagggg tgaattaacc attgcttcgg catatctccc gccgcaactg      2040
     tcgtggtcag caatggagtt ccagcaactt ttcagcggac taggaagaat gttccttatg      2100
     ggaggcgatt ttaacgccaa aaacagatgc tggggttgct ttagagctaa cgcaagaggc      2160
     acctgcttac tggacgcggt gcaaaactta tcatctgaaa tactagcgac tggacaagcc      2220
     actcatttcc cgtttgccca aagttacacg ccgagtgcca ttgacttctt tatttataac      2280
     ggacttcacc cagatggctt aagtataagg cctgagtttc agctatcctc tgatcatatc      2340
     ccactagtag ttggttacga ctgtattcca aagggcaaaa caattaaagg tcgcctgctg      2400
     cctcctggag ccaacattgc tgcttttcga cgagatctag aggaaactct agacctaaac      2460
     ttggaaatac ttgcaccaga agacatcgaa gatgtatatg cgctattcct gaacaaggtt      2520
     cactcggcaa ccctcatttc tgcgccagta agccgatcag aaagmtcacg accacaagtg      2580
     agacttccgc cagcaatcca tacactactg ctgattaaga gaaggattag aaggcagtac      2640
     tgtcgaaccg gagatccagt tgtggacagg atctaccgca gagtgtcgaa ccgtgtcaaa      2700
     aagctactgc agctgaatag acaaacggaa accgaccgtt ttttggaaaa tgtttctcca      2760
     gatgaatctt caagtcactc cctatggaga ctgacgagaa ggtacaaaca gcaagtgacc      2820
     cccaaatttc cgatcagaaa gcctgatgga tcttgggcca gatccccaaa ggaacgggct      2880
     gatgcattcg ccgaagactt ggaggatcgc tttaagcctt ttaatacaag ttcggcaagc      2940
     atgaacagaa gggttcaact macactggag agcccaggcc agctaagcct cccagttgct      3000
     cctatcactg ccaacgaagt atcagaccac atagcagcac ttaagacaag aaaagctcct      3060
     ggcgaagatg ggatcgacaa cataacactt aaggcattgc cggtcagagc agtcctattt      3120
     ttagtgttaa tctttaatgc ggtattgaga ctggggcatg ttccaagcca atggaaaaag      3180
     gcgaggatat gcatgatcca taaggctgga aagagcccct cgtccctaga ctcatacagg      3240
     cctattagtt tgttgcccac gatcggaaaa ctcttcgaac gttgtctgct tacgagactg      3300
     ctgtctatgg atagaattaa agaaaaaatt cccccctttc agttcgggtt ccgaaaatct      3360
     catggcacac cggaacaact aaatagggtg gtgaatttta tcctcgaggg tttcgaagcc      3420
     aaagagtacg tagtggcagc gtacttagat ataaaacaag ccttcgacag ggtctggcat      3480
     gatggactac tctgcaaaat caagcccttg ttgccacctc aactatattt gattgtgcag      3540
     agttatttga caaaccggtc attttcggta gtastcgatg gagtcgagtc saacatgaag      3600
     gccatcgggg ctggcgttcc tcaagggagt gtgctagggc ccacgctcta caccctcttt      3660
     acctacgata tgcccactgg ctctacaatt gaagtcgcgg atccacacga ccttacaatc      3720
     gccacttttg cagatgacac agccgtctta tcaagaaatg aatgtgtcta cgaagctacc      3780
     gacgtcctgc agcaatatct tcacaaattt gaaatgtggg ccaagcgttg gaatattggc      3840
     attaacttaa ataaatgcgc caatgtgacc tatgcgctac ggagggacat gtgtccggga      3900
     gtattcttgc gcggtcaatt ggtgacgcac ttcaacagcc acaaatactt aggggtgcac      3960
     ttagacagac gcttgaactt taacaagcac atcacaagtg tctctgtagc cctkaagagc      4020
     agaataggaa aactaagatg gcttctgagc agtagaaatg cgttgtcatt gaaaaataaa      4080
     gtcaccattt ataaatcctg catagctccc gcctggcgtt atggtatcca gatatatggc      4140
     attgctgcaa agtccagtct twcaaaaatc agggtgctcc aagcaaaaac gctccgatat      4200
     ctgtctggtg ccccctggta tatgagaacc tccgacttgg aaaaagacct aggagtgccc      4260
     aaagtcgggg acgtaataaa tatacaggcc gcaaattata tagcgcgact gagaaatcat      4320
     cctaatcgtc tggctaggcg tcttctgaat aggcgtagaa ttggaggact ccgaacgcgg      4380
     aggagactgc gaaggtctca cccaatagac ctcccwgatc gatttatata gtcgmcactg      4440
     taaattwgta tattagactt acctgtagaa taagtagttg taaatattca tataaattta      4500
     atttaagttg ttccwgataa taacagaaaa attaaaataa aacaaaactt aacaataata      4560
     aaaaaaaaaa aaaa                                                        4574
//
ID   Jockey-8_DYa repbase;    DNA;    INV; 4556 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4556
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1929-1929 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with ~98% identity.
CC   3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..2070
FT                 /product="Jockey-8_DYa_1p"
FT                 /note="zinc-finger."
FT                 /translation="MEDINFSGPQANCSVTDQQSMEQIAGATPAELRTQLL
FT                 NEFNHKWSISEANKFPTATIACTTTAVTFTLASSMTTSSVTTSLTGGVTSV
FT                 GNMIVDESSDSTSCPFQPSYVSVAPVKKKNHNSVTKTIKKGKAQTVPVAKA
FT                 LPKSATSSNRFSVLAQDEMEIDNLAAAHTETVAQTQAASNPTSRTDQSQTT
FT                 NNPLKTKRPSPTCVPSCNNIDALDQALCAVISLSSYSFKMSRSGVTRILTA
FT                 DPAAYRAAVKVLTDNNCQFWHHQLDEEKPFRLVVRKINPTVGTERVKNAFI
FT                 DYGHEVLNIHCPRKPDWSNASPSQDTLEDIRTRQACFFVNLKKAPNNMDAL
FT                 KISKIGPHNVIVERARKNKELVQCFRCQDFGHTKNYCLKRPVCGKCGGEHP
FT                 TNHKDCNIISPEACKCANCGEDHPASYKGCKVRQQKMKALKPEPRFPPLTT
FT                 ANEHLSSIRQNFSAAPARDRFSQAQGIQRVPTFADILREPRNDSQIPLMTT
FT                 RNLGRTQHVPQRDLPTNYSNSSEHLPVNANRINKLEDALVSLSSKVEQLST
FT                 LFAQSAESINSLSILITKLLVKLT"
FT   CDS           2070..3158
FT                 /product="Jockey-8_DYa_2p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MMQQDIRLGLWNARGIERSTNELHLFLSANRIDVMLI
FT                 TETHLQGQRRIYIPGFVCHKVDHPLGGRQGGAAILVRHDLEHHKLDEASST
FT                 NIQLVQIRLLTSTGPITVAAAYLPPRMSWTAIDFEIMLQRLGSKFILGGDF
FT                 NAKHPWWGNQRTCTRGKRLHEAICSSTYQILATGNPSFYSYNTQLNPSALD
FT                 FFVTNGIAQNRTSVENIYELSSDHIPIVATLFEAPQHIQTRTRLLPPGANI
FT                 KKFQNELEKSVLLNLEINSTEDVDHAIDVLMAKIKTAGIVAAPSNAHRPHA
FT                 RPPSLSSAAAALLNLKRRVRREFVRTRDPRLDRIFKRLANRLHKVLAVDKQ
FT                 NEIDKQMDSLSPDASTNYAI"
XX
SQ   Sequence 4556 BP; 1360 A; 1101 C; 908 G; 1185 T; 2 other;
     cattcgcgat cgagctctgc tagagagcag acgtgcctct agccgcggaa ctttttggca        60
     ttgtttcttt cgcatcgttt tcttttgcgt cgtttccttt gcgtcgatat tctcgtctgc       120
     ctagtgctcg agcacattta tttgcgacat cgtggcgcgc ggtgtccgct atctttctaa       180
     gaaaaccaca acaaacgcag aagtttccag aaaggcgttg caagcgcgag ggcttgccct       240
     tgcccttggg caagctgtat actttgctct tgctcttgaa agcgagaatt cacaataaag       300
     agaatttcaa caaacaattt cacaactaat gctgacaagt ttaagcttgc aaaaaccatg       360
     gaagatatta atttttctgg accacaggct aactgtagtg ttactgatca gcagagtatg       420
     gagcaaatag ctggcgctac tccagcagag cttaggactc aactattaaa cgaatttaac       480
     cataagtggt caatttctga agcaaataaa ttccccactg caactatcgc ttgcacaact       540
     acagctgtta cgtttacgct ggcttcgtct atgacaacca gtagcgttac cacatcctta       600
     actggcggag ttacttcagt cggcaacatg atagttgacg aaagttcaga ttcaacttct       660
     tgcccttttc agccctcgta tgtatcggtg gctccagtta agaagaagaa ccacaattcg       720
     gtaactaaaa cgatcaagaa aggaaaggca cagaccgtcc ctgtcgccaa agctctgcca       780
     aaatcggcta cctccagcaa ccgtttttcc gttctagctc aggatgagat ggaaattgac       840
     aacttagctg ccgctcatac tgaaaccgta gcccagactc aagctgcctc aaatccaacc       900
     tcccggacag atcagtcaca aacaaccaac aatccgttga agacaaaaag gccttctcca       960
     acatgtgtgc cttcctgtaa taatattgat gcccttgacc aagcgttgtg tgcagttatc      1020
     agcctgtctt cgtattcttt caaaatgtcc agatctggcg taacaagaat acttactgcc      1080
     gaccctgcag cctatagggc agccgtcaaa gtactaactg ataacaactg tcagttctgg      1140
     catcaccaac tcgatgagga aaaacctttt cgtctagtag ttcgaaaaat caacccaact      1200
     gttggtacag agcgagttaa aaatgccttt atcgactatg gacatgaagt attaaatatt      1260
     cattgcccaa gaaagccaga ctggtcaaat gcatctccta gtcaggatac tcttgaagac      1320
     atacgtacac gacaagcatg cttcttcgtt aatctcaaga aggctcctaa taacatggat      1380
     gctttaaaaa tttcaaaaat tggcccccac aatgttatag tggaaagggc cagaaaaaat      1440
     aaggagcttg tacaatgttt taggtgtcaa gattttgggc acacgaaaaa ttattgttta      1500
     aagcgcccag tctgtggaaa atgtggtggt gagcacccta ccaaccacaa ggactgcaac      1560
     attatctcac cagaggcctg taaatgtgct aactgtgggg aggatcaccc agctagctat      1620
     aaaggatgca aagttcgaca gcaaaaaatg aaggctctta aaccagaacc acgtttccca      1680
     ccacttacaa cagccaatga gcacttgtcc tccatccgtc aaaacttcag tgctgctcct      1740
     gcaagagaca ggttttctca agcacaaggt attcaaagag tgcctacgtt tgctgacatt      1800
     ctcagagagc cacgaaatga ctcgcagatc cctctgatga caactagaaa ccttggacgt      1860
     actcaacatg ttcctcagag agatttgcca actaattatt caaattcatc agaacatcta      1920
     cctgttaacg ctaacagaat aaataaactt gaagatgctt tggttagcct ctcctcaaaa      1980
     gttgaacagc tttccacatt gtttgcccaa tcggctgaat ccatcaactc cttgagcatc      2040
     ttgatcacca aactcttagt taagctaaca tgatgcagca ggatattcgc ctcggattat      2100
     ggaacgcacg gggaatcgag agaagcacaa atgagcttca tcttttcctc tctgccaatc      2160
     gcatagatgt tatgctcatc acagaaactc atcttcaagg tcaaagacga atctacattc      2220
     caggttttgt ctgccacaaa gttgatcatc ccttgggtgg tcgtcaggga ggagctgcca      2280
     tcttggtcag acatgatttg gagcaccaca aattggacga agcatcatct acaaacattc      2340
     agcttgtcca aattcgtcta ttaacatcaa ctggacctat cacagtggct gcagcttatc      2400
     ttccccccag gatgagctgg acggctattg actttgaaat tatgcttcaa cgattgggta      2460
     gcaaatttat ccttggaggt gattttaatg caaagcatcc atggtgggga aaccaaagaa      2520
     catgcacgcg tggtaaacga ctacatgaag ctatatgtag ttccacatac caaatactag      2580
     ctactggaaa tccgagcttt tactcctata acacgcaatt aaatccctca gccctggact      2640
     tttttgtgac aaatggtata gcacaaaaca gaacatctgt ggagaatatc tacgagctgt      2700
     catcagacca tattccgatt gtggccacac tgtttgaagc acctcaacat atccagacta      2760
     ggacgcgact tcttccccct ggtgctaaca ttaaaaagtt tcaaaatgag ctcgaaaagt      2820
     ccgtcttgct taatttagaa atcaactcga ctgaggatgt tgatcacgct attgacgttt      2880
     taatggccaa aattaaaact gccggaattg tcgctgctcc ctctaatgcg catcgccctc      2940
     acgctcgtcc tcctagccta tcatctgctg ctgctgcgct actaaacctt aagagaagag      3000
     taagaagaga attcgtgcgc acaagggacc ctagactaga taggatcttc aaacggctgg      3060
     cgaatcgttt gcataaagtc ttggctgttg acaagcaaaa tgagatcgat aagcaaatgg      3120
     atagtttaag cccagacgct tcaaccaatt acgctattta agatcaccag gcgttttaaa      3180
     aggcaaagca gtgcaaaggc tgctatcaag gatccttctg gtggctggtt tactcaaagc      3240
     aaaacgggct gaagcatttg tttaagcctg gaacagaggt ttagaccctt gatctaagct      3300
     ccaccgattc catagtcacg ttaccgaagc actcgatcag cccttacagt gcagctccct      3360
     tgtagcctgt tatactaagt gaggtcaaag aattggtgtc caagctaaac aacaaaaagg      3420
     cgcctggtga agactggctc gaaaacagga cactcaagtt gctgcccacc aaggmcctcc      3480
     tgtttatcac actgatcttt aactgctgcc taagactcag ctatttccca aaggcctgga      3540
     aaaatgcggc agttacaatg attcacaagc cagacaagtc accatcggaa gttactcgta      3600
     taggcccatt agccattacc agcccttgcc aaaatgcttg macgaattat tcttactcgc      3660
     attccaagca ccccagcaat acaggatgtt cttccgatta ccggactggt tttggataac      3720
     agcacggcac cccggaacat ttcaaccgag ccgccaactt cgttctggag gcagctgtct      3780
     ttcctaccat gagtcaagca ttcgataggc tttggcatgc aattatctct ccacagtttc      3840
     cttctttcaa aaagctctgg tggaccgcag cttttcggta ctagttgatg ggcagttccg      3900
     atagaaaacc tattaagctg gcgttactca gagcagcgta ttaggcccaa ctttttactc      3960
     gctacccaac taaagtgagc cttcgatata cagccttgaa cccgaatttc aaaataatgc      4020
     cctccttgct acttttgcag gatggcctca taaccaggag tccttccgaa attgaggcca      4080
     ctgaaattct ggatgtatgg tatccaaatc tatgggatag ctgccaagtc ccatttggcg      4140
     aaaattcgcg tagcacaagc aaagattttg cgtaggcttt caaattcccc gtggtatctg      4200
     aggacaagga acattgaacg tgacctgaaa gttactccca ttggcgacgc tatcaataaa      4260
     atatctgaaa gatacggaaa tcggctccga tgccatccta accaactagc cagctgttta      4320
     tctaccccac gtgtccctgt acatcgtcgc agaagaggtc cactgaggag attccccatt      4380
     gatctcacat atcgaaaaat atcataaaat aattctatag gaaataaaaa taaaattagt      4440
     tctaagatat aataaatgtt agattaagcg ccccattttg taatcaattt gatcaagctg      4500
     tctatagtta taatggtagc aataagcaaa tttaaaatcc aattaataaa tagata          4556
//
ID   Jockey-8_Hmel repbase;    DNA;    INV; 1750 BP.
XX
AC   .
XX
DT   09-DEC-2013 (Rel. 19.02, Created)
DT   09-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Jockey element from Heliconius melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1750
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1612
FT                 /product="Jockey-8_Hmel_1p"
FT                 /translation="DYSLWKATKSLKRPMVFQSPLRRDDGSWAKSDTDKSL
FT                 LFAEHLHRVFTPNSASGSTKINVVTEALSAPNLQSPPIKKICVKEVTSTIK
FT                 KLSLNKAPGYDLITTKVMKELPYLAILLLTEIFNAILRREFIPAQWKVAEI
FT                 ILIPKPGKDPNNVTSYRPISLLPVASKILEILILKRLSSELTRRNIIPSHQ
FT                 FGFREAHATIEQVHRVVEKIYDAYEHRKYCSAAFLDISQAFDRVWHEGLLY
FT                 KIRQTLPFRYFLIIKSYLHQRHFYVKHGEDRTGLFEIRAGVPQGSVMGPVL
FT                 YLIYTFDLPTTDEVLVGTFADDTALIAXHENPATASEMLQKSLNNISVWLK
FT                 DWRIKVNETKSVHVTFALRRDTCPSVELNGVIIXQSESVRYLGIYLDRRLT
FT                 WRKHIFVKRKALSVQIRKLYWLLSRKSKLSLHNKLLLYKVILKPMWSYGAE
FT                 VXGTASDSNLDIIQRFQSKTLRIITNAPWFVTNSQLHRDLRIPTVRVEITN
FT                 KLKSYSRRIKIHPNVLACKLMNPANSFKRLKRRTPQDLLQS"
XX
SQ   Sequence 1750 BP; 555 A; 407 C; 313 G; 470 T; 5 other;
     tgattactcc ctgtggaaag ccactaaatc ccttaaaaga ccgatggtat tccaatcacc        60
     actacgccgc gacgatggtt cttgggcgaa gagtgatact gacaaatccc ttctttttgc       120
     agagcactta caccgtgtat tcaccccaaa ctcagcctct ggctctacca aaattaatgt       180
     ggtaacggaa gccctttctg ctcctaacct gcagtcgcca cctataaaaa aaatttgcgt       240
     taaagaagtt acttctacta tcaagaaact ttcgttaaac aaagctcccg gctatgactt       300
     aattacgaca aaagtcatga aagagctacc ctatttggct atcctcttgt taaccgaaat       360
     attcaacgct atcttgcggc gagaattcat acccgctcaa tggaaagtag ccgagattat       420
     cctcattccc aagcctggca aagatccgaa taatgtcaca tcctaccgcc ctattagctt       480
     actgcctgta gcttcaaaaa tcctggaaat acttatttta aaacgattat cttcagaact       540
     caccagaaga aacattatcc catctcatca gtttggcttt cgcgaagctc atgcaactat       600
     tgaacaagtt catcgtgtgg tcgaaaaaat atatgacgca tacgaacaca ggaagtattg       660
     ctccgcggca tttctagata tatcacaggc attcgatcgt gtgtggcacg aaggtctcct       720
     gtacaagatt cgtcaaaccc tcccctttag atattttctc attataaaat catatcttca       780
     tcaaagacac ttttatgtta agcacggcga agacagaact ggcctgttcg aaatcagagc       840
     aggtgttcca cagggcagtg taatgggccc tgtcctttat ctaatttaca cctttgactt       900
     accaactaca gacgaagttc ttgtggggac atttgccgat gatactgcct taatagcwwc       960
     tcatgaaaat ccagcaacag cgtcagaaat gctacaaaaa agtttaaata acatatcagt      1020
     gtggctaaag gactggagaa ttaaagttaa cgaaaccaaa tcggtgcatg taacttttgc      1080
     tcttagacgc gatacttgcc ccagtgtcga acttaacgga gtaataatcc vtcaatcaga      1140
     aagcgtgcgc tacttgggca tatatttaga cagacgtctt acatggagaa agcacatttt      1200
     tgtaaaaaga aaagctctaa gtgtacaaat ccgaaagctt tattggctct tgtcacggaa      1260
     atctaaactc tcgttgcata acaaacttct cctgtacaaa gttattctta arcctatgtg      1320
     gtcttatgga gcggaagtat rggggactgc aagcgactca aacttagaca taatccaacg      1380
     ctttcaatca aaaactcttc gcataataac gaatgcccct tggtttgtca ctaactctca      1440
     gctacatcga gatctaagga tacctacagt gagagtagaa attaccaaca aacttaagtc      1500
     atactctcgt cgcataaaaa tacatcccaa cgtgctagcc tgcaaattaa tgaatccagc      1560
     taactcattt aaaagactta aaaggaggac cccacaggat cttctgcaat cataaaatag      1620
     gatctctcag gagaccgtta cattatgtgt ttatgccaat gggcgtatac caccaatgtc      1680
     tgtaagctcc taaccaccag cttaatgccc agatgaggca gttgcaggtt taattgctgt      1740
     taaaaaaaaa                                                             1750
//
ID   Jockey-8_HMM repbase;    DNA;    INV; 3094 BP.
XX
AC   .
XX
DT   07-MAR-2013 (Rel. 19.10, Created)
DT   07-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3094
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2803-2803 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..2825
FT                 /product="Jockey-8_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAETRVIFWNAAGPKGRXHFLRLLLRQQNIDVALINE
FT                 THLRKQDNLNLPGYXIIRQDAPTGFPLRGLLVAVRRNITHQVLPDQDPKSF
FT                 QSLGVEVYHGXGELRLYAVYRPPSTTLSTTEVRRMINSTIPTIAAGDWSSH
FT                 HPAWRCRNTCRNGRKLFEDAEKHGYVVEGPDQPTHYAHNRXHLPSTIDLVV
FT                 HRGLDTKPVTLEALPDAYGSDHLPVLVTIPERPVSAARLPXRRPIHWPRFE
FT                 ALMEERTPPRSEPLNDPPSIDRLVTDITVTMQEAIVEATAPPNTRRLPPIP
FT                 RRIKALIDKKRKMRIEWQRTREPATKTKLNGMIERIRLELESAAADTWEAR
FT                 IDEASEDQPSLNRLCRQLTKKAPPLRPLYHPDGTLRYDSQDRANILADHLE
FT                 GKFQPNPSQRPERHAVIEDQVLYQLDSPPTPLPPPPFMSPSSVRRAISSLX
FT                 PRKAPGIDGVTNGALRHLPLRTIAALTRLFNAILRLGYFPQAWKEGLVVMI
FT                 PKPGKDPRKPSGYRPITLLSAMSKLFERLLLPLIQAHLHPRPEQFGFRPGH
FT                 STTLQIARVVHFVAAATNRKENAAAIFLDVASAFDCVWHTGLLWKIASAGV
FT                 PYHILRILAGFLRGRTFRVRVDGAVSEAHNIXAGVPQGSTLSPSLYCTYTD
FT                 DIPLHQGAELALYADDIALLVKSLNPTHAAIKLQRALDLLPDWLAEWRLTL
FT                 NVAKTQAMVFGCHRLPPPLVLQGERIXWTPNATYLGVVIDKGLRMTAQVKK
FT                 ARNAARVALHLLRPVLRSRLPLRTKLAIYKTYVRPHLTYASPAWYALCSAN
FT                 QRRLLQTTQNVALRHVVQAPRFVRNATIQRDLRVERLXEHIIQLAARAFHR
FT                 ADVSDFPHIRDIAPWHTRPPDIRRLPRDILPPSDS"
XX
SQ   Sequence 3094 BP; 717 A; 1023 C; 781 G; 560 T; 13 other;
     agcagcagcc acggcagccg cccgcccaag ccaaccacag caagcccgcg ctatcacgat        60
     cgacagggcc atcgacaccc tcaaggaggt ccttttagcc ttgagggaag gtcgagaccc       120
     tgtcgaagcc gtactccagg gcatgacgcg mctccttcaa gatggctgaa acccgagtca       180
     tattttggaa cgccgccggc ccgaaaggaa gamatcattt cctccgtctc cttctccggc       240
     agcaaaatat agatgtggct ctcatcaatg agacccacct ccgcaagcaa gacaacctga       300
     acctaccggg ttaccamatt atccgccaag acgcaccgac gggcttccca cttagaggcc       360
     tactagtcgc agtaagacgc aacatcaccc accaagtgct gccagaccaa gaccccaagt       420
     cgttccagtc acttggggtt gaggtctacc atggtsacgg agagctgcgt ctatacgcag       480
     tgtatcgccc accatctacc actctgtcaa caacggaagt cagaaggatg ataaatagta       540
     ccatccccac tatcgcagcg ggcgactgga gctcccacca cccagcctgg agatgccgca       600
     acacttgccg aaacggacgc aagctcttcg aggacgccga aaagcatggt tacgtagtgg       660
     agggaccaga tcaaccaacc cactacgccc ataaccgcam ccacctcccc agcactatag       720
     acctagtggt gcatagagga ctggatacca aaccggtgac actcgaggcg ctgcctgacg       780
     cctacggttc tgaccactta ccwgttttgg tcacgattcc ggaacgtccc gtatcggctg       840
     cacgtctacc tmcgagaagg cccatacatt ggcctcgctt cgaagcccta atggaagaaa       900
     ggacgccacc gcgctccgag ccgctgaacg accctcccag tattgaccga ctggtgacgg       960
     atatcacggt gacgatgcag gaagcaatag tggaagctac tgcacctcct aacactcgaa      1020
     gactcccacc gatcccaagg cgaattaagg cccttattga caaaaagagg aagatgcgca      1080
     tcgagtggca aaggacacga gagccggcta ccaaaaccaa gctgaacggc atgatcgagc      1140
     ggattcgctt ggagctggag tcggctgccg cagacacctg ggaagcgagg attgacgagg      1200
     ccagtgagga tcagccctcc ttgaatagat tgtgccgcca gctcacaaag aaggccccac      1260
     cgctccgacc actctatcac cccgacggca cgctgcgmta tgactcccag gacagggcca      1320
     acatattggc agaccaccta gagggtaaat tccaacccaa cccaagccag cgccccgagc      1380
     gccacgccgt gattgaggac caggtgctat accaactgga ttcaccacca acaccactac      1440
     cgccaccgcc atttatgtcc ccgtcgagcg tcaggagggc catttcttcg ctcmaaccga      1500
     ggaaggctcc agggatcgat ggtgtgacca acggcgcgct gcgacacctc ccgttacgga      1560
     ccatagcagc attgaccagg ctcttcaacg cgatcctgcg cctgggttac ttcccccagg      1620
     cgtggaagga aggcctggtc gttatgattc ctaaaccagg caaggacccc agaaagccgt      1680
     cgggctatcg gcccatcacc ctactcagtg cgatgtccaa attgtttgaa aggctgctac      1740
     tcccactcat ccaggcgcat ctccacccac gccctgagca atttggattt cgcccgggcc      1800
     actccacgac gctgcagata gcgagagtgg ttcattttgt agctgcagca accaatagaa      1860
     aggagaacgc ggcagccatt ttcctcgacg ttgccagcgc atttgattgc gtctggcata      1920
     ccggactact ctggaagatt gctagcgccg gagtccccta ccacatcctc aggatcctcg      1980
     ccggtttcct ccgcggcagg accttccggg tgagggtaga cggcgctgtg tccgaggccc      2040
     acaacatcma agcaggcgtt ccgcaaggaa gtacactttc gccttccctg tactgcacat      2100
     acaccgatga catcccactc caccagggcg cggaattggc gctctacgcc gatgatatcg      2160
     cgctcctggt gaaatcactg aatccgaccc acgctgccat caagctacag cgcgccctag      2220
     atttgcttcc ggattggcta gcggagtgga ggttgacgct gaacgtggcc aagactcagg      2280
     ccatggtgtt tgggtgccac aggctccctc ctccgctagt cctccagggt gagcgcatca      2340
     gstggactcc gaatgccacg tatctgggtg tcgtaataga caaaggtcta cggatgacgg      2400
     cccaggtcaa gaaggcaaga aacgccgcaa gggtagccct ccaccttctg cggccggttc      2460
     ttcgctcccg tttgcctctc cgtaccaaac ttgcsatcta caaaacatac gtcagacctc      2520
     atctgacgta tgcctctccg gcatggtacg cgctttgcag cgcgaaccaa cggcgcttac      2580
     tacagacaac ccagaacgta gcactccggc acgttgtcca ggccccccga ttcgtgagga      2640
     acgccaccat acagcgtgac ctccgcgtcg agaggcttga mgaacacatc atccagctcg      2700
     cagcccgcgc ctttcaccgt gctgatgtct cggatttccc tcacattcga gacatcgcac      2760
     cgtggcacac ccgcccaccg gatatacgcc gactcccgag ggacatcctt cccccttccg      2820
     attcctgagc tgcagctccg gtcgctggtc gcctaagctg ggcctcctct gggttaccag      2880
     gggtctcacc cggctgggct gaccgcccga gcagcatata gctcctcctc tcccgctcca      2940
     ctttccccca gtccctagga cacaactaca gggccttggc ccaccccaac gacgcgccca      3000
     tggccatggg cggagaaaga acaccacggt ctgagggctc agccctggaa ccgtctcccc      3060
     tctccctccg cggggggctg agagaagaat ttca                                  3094
//
ID   Jockey-8_LMi repbase;    DNA;    INV; 4741 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 19.11, Created)
DT   01-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4741
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3153-3153 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(433..654,658..984,988..1473,1487..1915,
FT                 1876..2181,2112..2753,2516..4060)
FT                 /product="Jockey-8_LMi_1p"
FT                 /translation="TLPAFGHSLLAAAWHRCRKCGQPLSQHTTDARKCANW
FT                 GRMRHLQEVLRLHRGPDAKTENVYNKNTPRPPSPSVTEWSSRVASGQGRAA
FT                 DAQGPHTQHPRQKHKQHTNSPHTETTLPAPDNTEPTPSTSSCNTHDRKNAP
FT                 TQGKPKPQRRRRGPKKQRGNTTAPQQDNAATEHRLSGTKHSNGNNTHYTTP
FT                 HHTRNTGANRRYTQQTHKPAQTQRQHKHKRPPTRRIPLRPTYPTPKQHREE
FT                 YCRQYAGTIPPTHDSAGLFEDLGSRHHTHHAAHDCRNRPVLGCHTNSDHKP
FT                 VHTHSWITRHTRPLPHINNLTLSQILFWNADGITNKRAEFAALLEVKGILI
FT                 ALTQTSXQTELHWLLRLSYRPSGRQRRRNSDHHTQNIEHTNIQLPALERLE
FT                 ATAVRVKFNGAYTALVSLYNPPGNIVTRDISTVLNIAPRVIAAGDLNAKHR
FT                 DWNSIRQNRNGKKLYEHSLGRNYITLAPVEPTIFLTRGIKGQTTDYIPYQR
FT                 NQRPDVIDMALIKGITVTLNLEVVNDLPSNHTPVILHTEETLQYNEPRRIL
FT                 NYKRANWALFKETLDNRIPDTRLRKQNKLMKLLKSSQLLSKTQYEITQTEQ
FT                 IDEAVEVLTTAVQDAIAESIPLRATQQHSAALPQEILGLISMRNRLRRYWQ
FT                 RTRRPVYKHHVNRLQGIIRGKITTFKTTQWDQKLAGLDTTRPGVWALARHF
FT                 TREKLYTPTLQGPNGPAYSAEEKAELMAQTLAASFTPNLAPPTQCSHLRRT
FT                 RRSHASWPSLRATKSDVLAHMKSHGPSSTPQPEKRLALMAFKTGFSRSSRI
FT                 EQANGPNTSSVIHTEPGSSDPVFTLETDQAITRFMAQPPRNEIRRTSTHEI
FT                 TWAIKHTTARKAPGPDGIQNRVLQEFTDRAIEYLTHITNAILQHQHFPAFW
FT                 KAAKVLMFRKPGKDNSLPQNYRPISLLSSLSKIVEKVILKRLTRHCITNDT
FT                 LRPEQFGFRNHHSTTQQLLRVVEHITDGYNKNKATGAVFLDIEKAFDRLWH
FT                 NGLIRKLNDAAFPDGLVHLIHSYLTNRSFNTDVQGKQSTRHGIQAGVPQGS
FT                 ILGPLLFNLYINDFPSTHNTMTAIYADDTAIMAQDWKPSNINSRLQTALRT
FT                 AEPWLEKWRVKVNVDKCEAVLFTRRPKHLRKHQHCRPITLHTRPIRFREKV
FT                 KYLGVWLDRKLTWGDHIQHMTNRANARLKQLYPMLNRESKLNSRVSRNLYM
FT                 THIRPLMTYGAPCWAYAAPTRLRRLQLIQNKVLRIISNAPRYTRTVDLHNE
FT                 YRLERLSVVFKKLATRLYKNSRHSNNPFILRLGNYDHNHRWKHNAQKHFSS
FT                 ETNHLRS"
XX
SQ   Sequence 4741 BP; 1462 A; 1477 C; 987 G; 813 T; 2 other;
     taggaaatac gcagcaaaca gccaagcagg cacgacaaca cggactggat tcccacagtc        60
     atcatataaa actacggtga cctcagtcgc ctaaacaaag aattcgtaga cacacacaag       120
     ccaccaccta ccacacaaaa ctaacacggg aaaacgctgc actgtacgtg gataccaaac       180
     aggactacac caattcctga gcttcctcaa agcgggaccc acacgtacag aaccgcggac       240
     gacgcacact gtacgtcggg ggccggcgca ccttggcgtg acctggcttg actgcagagc       300
     aagctggtca acgacacact accacaacta ccttgtgagt ggccgacggc ccactcccga       360
     gcttaaggta aatagtcctt catatgggag aaggtagaac ctacgagcca cctgcgtccc       420
     ccaacgatgt aaacgctgcc agcgtttgga cattcgctgc tcgctgcagc ctggcatcgg       480
     tgccgcaaat gtgggcagcc actcagccaa cacacaacag acgcacggaa atgcgctaac       540
     tgggggcgca tgcgtcacct acaggaagtg ctccgcctac atcgcggccc tgatgcgaaa       600
     acagaaaacg tatacaacaa aaacactcca agaccaccct ccccctccgt gacctgagaa       660
     tggtcttcgc gcgtggcaag cgggcagggg agggcagcgg acgcccaggg cccccacaca       720
     caacaccccc gacagaaaca caaacaacac acaaactccc cacacactga aacaacacta       780
     cccgccccag acaacacgga acccaccccc tccacgtcga gctgtaacac gcacgacagg       840
     aaaaacgcac ctacacaagg gaaaccaaaa ccccagcgta ggagaagggg acccaagaaa       900
     cagagaggga acactaccgc accacaacaa gataacgcag caacggaaca ccgactctca       960
     ggcaccaaac acagcaacgg aaactagaac acacactaca caacccctca ccacaccaga      1020
     aacacaggcg ccaacagacg ctacacgcag cagacacaca agccagccca aacccagcgc      1080
     caacacaaac acaagcggcc gccaactcgc cgaataccac tcaggccgac atacccaaca      1140
     cccaaacaac accgggagga atattgcagg cagtatgcag gcactattcc cccaacacac      1200
     gactcagcag gtcttttcga agatctgggg agccgtcacc acactcatca cgcagctcat      1260
     gactgccgaa accggccagt actgggctgt catacaaaca gcgatcacaa acctgttcac      1320
     acccattcat ggataacacg ccacacccgc cccctccccc acataaacaa cctaacacta      1380
     tcacagatcc tgttctggaa cgcagacggg atcaccaaca aaagggcaga atttgccgcg      1440
     ctccttgagg ttaaggggat actcattgcc ctgtgagcga gactaaactc aaacctcacm      1500
     acagactgaa cttcactggc tactgcgtct atcgtaccga ccgagcggac ggcagaggag      1560
     gcggaacagc gatcatcata cacaaaacat tgaacacaca aatatccagc tccctgcact      1620
     tgaaagatta gaggccacgg ccgtcagggt caagttcaac ggagcataca ctgcactggt      1680
     gtcgctttac aaccctcctg gtaacattgt aacacgcgac atcagcacag tactcaacat      1740
     tgcaccgcga gtcatcgccg ctggagatct gaacgcaaaa caccgcgact ggaactcaat      1800
     cagacaaaat cgcaacggca aaaaactgta cgaacactca ctaggcagaa actacatcac      1860
     acttgcaccg gttgaaccga ctatattcct taccagagga atcaaaggcc agacgtgata      1920
     gacatggccc tcatcaaggg cataacagtt accctcaacc ttgaggttgt aaacgatctg      1980
     ccttctaacc acacccccgt tatacttcac acggaagaaa cactgcagta caatgaacca      2040
     cgcaggatac taaattacaa gcgcgcgaat tgggctctgt tcaaggaaac gcttgataat      2100
     cgtattcctg atacgagatt acgcaaacag aacaaattga tgaagctgtt gaagtcctca      2160
     caactgctgt ccaagacgca atagccgaat ccataccatt acgtgccaca caacaacact      2220
     cagcggccct gccccaggaa atcctgggcc ttatctcaat gagaaaccga ctcaggagat      2280
     actggcagcg taccaggcgt ccggtgtata aacatcacgt caacaggcta cagggtatca      2340
     tacggggtaa aataacaaca ttcaaaacga cacaatggga ccagaaactc gctggactgg      2400
     ataccacacg tcctggagtg tgggctctgg ccagacactt caccagggag aaactctaca      2460
     cgcctacctt acagggacca aacggcccag catactcagc ggaagagaaa gctgagctaa      2520
     tggcccaaac actagcagcg tcattcacac cgaacctggc tcctccgacc cagtgttcac      2580
     acttgagacg gaccaggcga tcacacgctt catggcccag cctccgcgca acgaaatcag      2640
     acgtactagc acacatgaaa tcacatgggc catcaagcac accacagcca gaaaagcgcc      2700
     tggccctgat ggcattcaaa accgggttct ccaggagttc acggatagag caatagagta      2760
     cctgacacac atcacaaatg ccatcctgca acaccaacac ttccctgcct tttggaaggc      2820
     ggccaaggtc ctgatgttca ggaagccagg gaaagacaac tccctcccac aaaattaccg      2880
     acccatcagt ctgctgagct cgctcagtaa gatagttgag aaggtaattc ttaaacgtct      2940
     cactcggcac tgcatcacca atgacaccct aagaccggag caattcggat ttaggaatca      3000
     ccactccaca acacaacaac tcctccgcgt agttgaacac ataacagacg gctacaacaa      3060
     aaacaaagcc actggggcgg tgttcctgga catcgaaaaa gctttcgatc gtctctggca      3120
     caacggcctt atacgcaaac ttaacgacgc cgcgtttccc gacggactcg tgcatctcat      3180
     acactcatat ctcaccaaca gaagcttcaa cactgacgtg cagggcaaac agtctacacg      3240
     acacggtatt caagccggag taccccaagg cagcatcctg gggcccctct tgtttaacct      3300
     ctacattaat gattttccat ccacacataa cacgatgact gcaatctacg cagatgacac      3360
     cgccatcatg gcgcaagatt ggaagccatc aaacattaac tcacgcctac agacagcact      3420
     cagaactgcc gaaccttggt tggagaaatg gcgtgttaaa gtcaacgtcg acaagtgcga      3480
     ggcagttctg ttcacacgca gaccgaaaca cctgcgcaaa caccaacact gtagaccaat      3540
     tactctacat acacgcccaa tacgtttccg tgagaaagtc aaatacctcg gtgtctggct      3600
     ggaccggaaa ctcacatggg gggaccacat acaacacatg accaaccgag caaacgcgag      3660
     gctcaaacaa ctctacccga tgctcaacag ggaaagcaaa ctgaatagcc gggtgtcgag      3720
     gaacctctac atgacacata ttagacctct gatgacgtac ggtgctccgt gctgggcata      3780
     cgcggcgcca acacggctgc gccgcctgca gctcatacag aacaaggtac tacgcatcat      3840
     tagcaacgct ccacgataca cacgcaccgt ggatcttcac aatgaatacc gcctagagcg      3900
     cctctcggtg gtattcaaga aactcgccac acgactgtac aaaaactcga gacactcgaa      3960
     caaccccttc atcctacgct tggggaacta cgatcacaac cataggtgga aacataacgc      4020
     ccaaaaacac ttctcctcag agactaacca cctacggtca tagggaccac caactcgcaa      4080
     acacgatgaa catggcgaac ccctgcagaa cagcaaactg actggcaatg ccagctgagc      4140
     ccacagccga ccaacaggca aggcagggaa accatattca gcgcactaaa cacaaacaaa      4200
     cctatacagt cccacacact tagccagttc tatgaccgaa ctgcctaact accatgacaa      4260
     acttggctat gttacaggta ttctgccgca gccgacccag gagacttcac aggagctcag      4320
     ctgcagcaga acctcgcatc aaaacggact gattctttat gacaaaccta gcaaagttaa      4380
     tggtaccgag aatatacccw ttactaacat taccaaacct tgcatgatct gtcgcagata      4440
     gcataccgct actgcccttc aaacctaccc cactgtcgca gaggtttttt ttcccttggc      4500
     tcttgccttg gcactttttt tcctctgccc ttacatacct ttacccttcg tatacctttc      4560
     gaccaattct atctccagat gcaccgtatt aatgggtgat cgtgcccaca cgtacggata      4620
     acatcgcggt tcccacatcc cgtgatccac cttagcaaac taacctaatt acggaggtga      4680
     cagtagaact tttgtgatgg tcaccacgtt ggtgtgggcg tggaggggcc ccatccttga      4740
     g                                                                      4741
//
ID   Jockey-8_RPr repbase;    DNA;    INV; 1323 BP.
XX
AC   .
XX
DT   12-MAR-2013 (Rel. 20.10, Created)
DT   12-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Jockey-type non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1323
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3473-3473 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           12..1127
FT                 /product="Jockey-8_RPr_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="KLLLKRIIPILESHRIIPNHQFGFRSQHSTIQQCFRV
FT                 VDKISSALEKKDFCLGAFLDVAQAFDRVWHPGLLYKLKQFLPTPYYQILQS
FT                 YLTGRYFKVRCGIEFSDAKRIQAGVPQGSILGPVLYLVYTADIPTHPHTLI
FT                 TTYADDTAILSSNPNPSEASTYIQEHLDLISSWCKKWKXRLNEDKCQQITF
FT                 TLRRQTCPPLLIHNREIPTSTQVRYLGLYLDSRLTWNPHTRLKRQELNRRY
FT                 GQLRRLLGRRSAMNVQNKLTLYKTLLRPIWTYGAELWGSAKPSNIQRIQSF
FT                 QSKVLRHIVNAPYYVSNLTLHTDLNIPFVNDLIHSRFLNFHNSLTIHPNPT
FT                 AQALSTTTHPDSPPRRLKRRWPRDLLPIS"
XX
SQ   Sequence 1323 BP; 414 A; 378 C; 203 G; 327 T; 1 other;
     caaatccttg aaagctccta cttaaacgca taattcccat tttagaatcc catagaatta        60
     tccctaatca ccaatttggt ttccgatccc aacactccac tatacaacaa tgtttccgag       120
     tagtggacaa aatatcctct gctttagaaa aaaaagattt ctgtctaggt gccttcctgg       180
     acgtagcaca ggcttttgac agggtgtggc acccaggact gttgtacaag ctgaagcagt       240
     tccttcccac tccttattac caaatccttc aatcctattt gacaggtcgc tacttcaagg       300
     ttagatgtgg cattgaattc tctgatgcta agcgcatcca agccggcgtc ccgcaaggaa       360
     gcatccttgg cccagtccta tatctagtgt acactgctga catccccacg cacccacata       420
     ccttaattac aacctacgca gacgataccg caatattatc ctcaaatccc aatccatctg       480
     aagcctccac atatatccaa gaacaccttg atctcatttc ctcttggtgc aaaaaatgga       540
     aaatkagact gaacgaagac aaatgccaac agataacatt caccttacgt agacaaactt       600
     gccccccact actcatacac aacagagaaa taccgacctc cacacaagta cgctacctag       660
     gactgtattt agacagtcga cttacatgga acccgcacac tagactgaaa agacaagaac       720
     tcaatagacg atacggacaa ctacgaagac tgctagggcg gagatcagcc atgaacgtac       780
     agaacaaact gactctatac aagacactac taagacccat ctggacctac ggagctgagc       840
     tgtggggctc tgcgaaacct tccaacatcc aaagaatcca atcctttcaa tctaaagtcc       900
     ttcggcatat cgtcaacgct ccttattatg tatccaattt aaccctccac acagacctca       960
     atatcccttt tgtcaatgac ctaatccatt ctcgcttcct taatttccat aatagcctaa      1020
     ccatacatcc taatcccaca gcacaagcct tatccacaac aacccatccc gacagtcctc      1080
     cacgacgcct gaaacgacgt tggccccgtg accttttacc tatttcctaa acttccttcc      1140
     aacccctaga gagttccagc attggctggc ccctctcacc atgccttccc gattgtggcg      1200
     ctggatcctc gggttcagcc tacaatctgt gcctaacaaa atgatgaaca catttacttg      1260
     atgtatgtta tatgtataca ggttgtaaat aaataaatat atacaataaa aaaaaaaaaa      1320
     aaa                                                                    1323
//
ID   Jockey-9_BTa repbase;    DNA;    INV; 5523 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5523
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 711-711 (2018).
XX
DR   [1] (Consensus)
XX
CC   a sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..2305
FT                 /product="Jockey-9_BTa_1p"
FT                 /translation="MAGVGQNPDTSQEDINRVLNVNIDSVLSSDVGDNVKD
FT                 WIVCANSVTKNLVRENSNLNSKFEDNFKIINELRKEIDILKKKSNFPTSAP
FT                 KRSSSTDRIGVKRTSSLDRSSNKMNIQQKLQNFAFVAKPKPPITSVLKTPP
FT                 ISTTPVSNKFAKLEADIESSSDDCNSDPEFSQQRKAIRRERKRKRTSGNSS
FT                 EDQLKSDKDKRLTNKPSTQAQDNSSNQENPISNSNKDSQSAVQVSSNPAKK
FT                 ILPPPPIKVVGIDNFTSLLDILTKIGVKKTDFTTKLFQNNIWKINPKDDTT
FT                 AKLILGGLNEINKNGNNVQFYTHANKNIRDLKVICRGIHPSVDESEILSDL
FT                 LSKGFKPTKVTCLMKKIANVSQKNKGNTDNVNTTDKNKVVNTNTDKLHINT
FT                 VNSNTVVSNTNASVTSDTPMETNADSNQLEISGTIVNNSDATSQTTQNTGP
FT                 TVSNVNNNTVNTNTNPISSEKIIDNDGQQLFAEDTTYVNKFKLVRIPVHQL
FT                 DFECTDNLEEIYKIRSICSMIIKIEPIKVKSNNIIQCKRCQSFGHSFSFCG
FT                 KQARCVKCSGKHLTGECNFRRLITPKCVNCGETGHPANYRGCPFAKKIQTD
FT                 FKKARSGKKPNQNLENANFPTLKKKGKNPISNNVATPKLKPGTSFADAVNN
FT                 QHHNNSGNLNESLIIQLLATIESQRKTIETLTQKMEKLESLFQKNINKK"
FT   CDS           2308..5043
FT                 /product="Jockey-9_BTa_2p"
FT                 /translation="MSHNDSILNILLWNANGLTHSKSLEFGHSMLNLNVDI
FT                 ALISETHFQKKDKRFIQGFNIYSAFHPGTEAKARGGAAVIIRKSIRHSLID
FT                 VIEEDAFQCVIIEVITGLGRFNLAAVYFPPRVKCTDEIYNTFLEKLGPRFL
FT                 VGGDFNCKHSRWAARTDTPKGVRLVKAVNSIGGNFICSGKPTFYPSNPLQV
FT                 PDSIDFFIYNNLPLVDRTQCDNIERKIDHEPVLLSIFTHPVLKKKPPCLIS
FT                 PKTNWEKFREILSTQICNDTKIDTPQDLDREIELLTLQIQEAAKTSTPVAR
FT                 NTNVKCDQLKLPSEILDLICKKRKARRKMTTTRYDEDKREYNRINKLVQKR
FT                 INQYRNERFENFLSNLGTREVDDYSLWKATKFLKRPHELSLPIKDSDGSWA
FT                 KNADDKAVVLASHLEQVFKPNKLNNEEETEDEVRKIDYSNIRFLPDKKINK
FT                 ISHDEIFNEIKYKTKLRKAPGFDLISGIIVKQLPAIAIKKLVAIYNAVIRL
FT                 KYVPLQWKKAEIIVILKSGKPASDPASYRPISLLPVLGKIFEKLYIKRLLK
FT                 IANKKNLIIKEQFGFRAKHSTIEQLHRVTSFVMKALERGHFCNGVFLDFTQ
FT                 AFDRVNHQRLVEKLAKMLPGNHTKLLASYLTDREFRVRFEDAYSEFKPIRA
FT                 GVPQGSVLSPLLYSLFTADIPKPQGNSELGVFADDTSVFASAPSYEETVDM
FT                 LQTSLDEIEEWTNADGSKLNPNKSENVVFTLRNFVHIPLVLNGQAIPQSKA
FT                 ARYLGLIMDSKLNYAEHISRKKKQIELKLLKMYWLFGKKSKLSLNNKILLY
FT                 KSMIRPIWAYASQLWACAANSNIRKMETVQNKILRQIANAPWYMRNDDIRS
FT                 ELGLESLDVFISRMYGRYEERLESHPNPEAIKLLDWAGETRRLKRRKPHEL
FT                 YTPDFRKI"
XX
SQ   Sequence 5523 BP; 1932 A; 1070 C; 982 G; 1536 T; 3 other;
     tatgttatgt tatgttcgta tatgcgtttc gttatattcg tattgcattt ttaaataatt        60
     gcaagtgtct ctgctgccgt ggcagcttgt gcttttacga aatactaacc tacaaaacaa       120
     aaatcgtgaa aacgtggatt ctcttaagtc aaaacgttgt aaataaccca ttgtattata       180
     gtgtaaataa gctttttaat ctaccctcgc catggcgggg gtaggacaaa atccagatac       240
     ctcccaagag gacataaatc gtgtacttaa tgtaaatatt gattctgttt taagttctga       300
     cgttggagac aacgtcaaag actggatagt gtgtgctaat agtgtcacca aaaacctggt       360
     aagagaaaac tcaaatctca attccaaatt cgaggacaat tttaaaatta tcaatgaact       420
     tagaaaggaa attgatatct taaagaaaaa atccaatttt ccaacaagtg cgcctaaacg       480
     tagtagtagc actgatagaa ttggggttaa aagaaccagt agtttggaca gaagttctaa       540
     taaaatgaac attcaacaaa aattgcaaaa ttttgccttt gttgctaaac caaaaccacc       600
     gattacttca gtgctaaaaa ctccaccaat ctctactact ccagtttcaa ataaatttgc       660
     taagcttgaa gctgatatag agagctccag tgatgactgc aactctgacc cggaattctc       720
     acaacaaaga aaagcgataa gaagggaaag gaaaaggaaa aggaccagtg gtaattccag       780
     tgaggaccaa cttaaaagcg acaaggacaa aaggctcacc aataaacctt caactcaagc       840
     tcaggataac tccagcaatc aagaaaatcc aatcagcaac tccaataagg attctcaatc       900
     agcagttcag gtttcttcca atccagctaa aaaaatcctt cctcctcctc ctattaaagt       960
     agttggaatc gataatttta cgtctcttct agacatcctc actaaaattg gtgtaaaaaa      1020
     aactgatttt acaactaaac tcttccaaaa caatatttgg aaaatcaatc caaaggatga      1080
     taccactgct aaattaattc taggtggact taacgaaatt aataaaaatg gtaataatgt      1140
     ccaattttat acccatgcca ataaaaacat tagagacctt aaagttatct gcagaggtat      1200
     tcatccttct gttgatgaaa gcgaaatact aagcgattta ctctccaaag gcttcaaacc      1260
     aaccaaagtg acttgtttaa tgaaaaaaat cgctaacgtt tcccaaaaaa ataaaggaaa      1320
     tacggacaat gtaaatacta cagataaaaa taaagttgta aatactaata ctgacaaatt      1380
     acatattaat actgttaatt ctaatactgt tgtttctaat acaaatgctt ctgttaccag      1440
     cgatacgcca atggaaacta atgctgattc taatcaacta gaaatctcag gtactattgt      1500
     aaataatagt gatgccacat cacagactac tcaaaatact ggcccaactg taagtaatgt      1560
     aaataataat actgttaata ctaatacaaa tcctatttcc agtgaaaaaa tcattgacaa      1620
     tgatggtcaa caactttttg ctgaggacac aacatatgta aataaattca aattggtaag      1680
     aattccagta caccaacttg acttcgagtg tacagataat ttagaagaaa tttataaaat      1740
     aagatcaatc tgctctatga tcatcaaaat tgaaccgatt aaagttaaat cgaataatat      1800
     cattcaatgt aaaagatgtc agtcttttgg tcatagtttt tcattttgtg gtaagcaggc      1860
     caggtgtgtc aagtgctctg gtaagcacct gactggtgag tgcaatttta gaaggctgat      1920
     cactcctaag tgtgtgaact gcggtgagac agggcacccg gctaattaca ggggctgccc      1980
     cttcgccaaa aaaattcaaa ctgattttaa aaaggctaga tcagggaaaa aacctaatca      2040
     aaatctggaa aacgctaatt ttccgacgtt aaaaaaaaaa ggtaaaaatc cgattagtaa      2100
     taatgtggca acgcccaagt taaaacccgg taccagtttt gcggatgcag ttaataatca      2160
     acatcataac aactctggca atcttaatga atcactcatt atacaactct tagctactat      2220
     cgagtcgcaa aggaaaacaa tcgagacttt gacgcaaaaa atggaaaaac ttgaatcact      2280
     tttccaaaaa aatattaaca aaaaataatg agtcataatg attccattct caatatcttg      2340
     ttatggaatg cgaatggtct gactcattct aaaagtcttg aattcggaca ttctatgctt      2400
     aacttaaatg ttgacattgc attaatttct gaaactcatt ttcagaaaaa agataagcgt      2460
     ttcattcagg gtttcaacat ctacagtgcc tttcacccgg gaacagaagc taaggcaaga      2520
     gggggggccg ctgtaattat cagaaaaagc attcgtcact cattgattga tgttatcgag      2580
     gaggacgcat tccagtgtgt tataatcgag gtcattacag gtctgggacg ttttaattta      2640
     gcagctgttt attttccacc tcgtgttaaa tgcacagatg aaatttataa tacctttcta      2700
     gaaaaactcg gcccaagatt cctggtgggc ggggacttta attgcaagca ttccaggtgg      2760
     gcagctcgca cagatacccc taaaggagtc cgactggtta aagcagtcaa ttccattgga      2820
     ggcaatttca tttgctccgg gaaacccact ttttacccaa gtaatccgct ccaagttccg      2880
     gactccattg actttttcat ttacaacaac cttccacttg tagatcgcac tcaatgcgac      2940
     aacattgaaa gaaagattga tcatgaaccg gtgctcttga gtatttttac ccacccagta      3000
     ctcaaaaaaa aaccaccctg tttaatctcg cccaaaacaa actgggaaaa atttcgtgaa      3060
     atacttagta ctcagatctg taatgacact aagatagaca cgcctcaaga cttggacagg      3120
     gaaatagaac tgttaaccct tcaaatccaa gaagcagcca aaaccagtac accagtggct      3180
     cgcaatacta atgtaaaatg tgatcaactt aagctgcctt ctgaaattct agatttaata      3240
     tgtaaaaaaa ggaaagcaag gaggaaaatg acaacaacaa gatatgatga agataaaaga      3300
     gagtataata gaatcaacaa actggttcaa aaacgtatta accagtatag aaatgaaagg      3360
     tttgaaaatt tcctgtccaa tcttgggacc agagaggttg atgactactc gctatggaag      3420
     gctaccaagt ttttgaaaag acctcatgaa cttagccttc ccattaaaga ttcagacggt      3480
     agttgggcaa aaaatgctga cgataaagca gtagttttgg cctctcacct ggaacaagtc      3540
     ttcaaaccga ataagttaaa taacgaagag gagacagagg atgaagtgag aaaaattgac      3600
     tattcgaata ttcgcttcct ccccgataaa aagatcaata aaattagtca tgatgagata      3660
     ttcaacgaga tcaagtacaa gactaaactc aggaaagcgc ccggtttcga cttgatatcg      3720
     gggattatcg tgaaacagct acccgctatt gcaatcaaga aattggttgc aatttacaac      3780
     gcggtcatca ggctgaaata cgtccctctc cagtggaaaa aggctgaaat tatagtaata      3840
     cttaaaagtg gcaaaccagc gtctgaccca gcctcatatc gcccaatatc cttacttccc      3900
     gttctaggga aaatctttga aaaactgtat attaaaaggt tattaaaaat agcaaataaa      3960
     aaaaatctaa tcatcaaaga acagtttgga ttccgtgcta agcacagtac gattgaacag      4020
     ctacatagag ttacttcctt cgttatgaag gcactggaga gggggcattt ctgcaatggg      4080
     gtgttcctgg atttcaccca ggccttcgat agagtaaacc accagcgtct cgttgagaaa      4140
     ctcgcgaaga tgcttcctgg aaatcacacc aagcttttag cttcatatct aactgataga      4200
     gaattcaggg tgcgtttcga ggacgcatat tccgagttca aaccaataag agctggcgtt      4260
     ccacaagggt ctgttctatc accccttctg tatagcttgt tcacagcaga cattccaaaa      4320
     cctcaaggaa actctgagct gggtgtgttc gcggatgata cttcggtttt cgcgagcgcc      4380
     ccatcatatg aggaaactgt ggacatgctg cagaccagtc tggatgaaat cgaggaatgg      4440
     acgaatgctg atgggtccaa gttaaatcca aacaagtctg aaaacgtggt tttcacactt      4500
     aggaattttg tccatattcc cttagtgcta aatggacaag ctatacccca atcgaaagca      4560
     gccagatacc ttggccttat catggactct aaactgaact atgctgaaca tatttctagg      4620
     aaaaagaagc aaattgaact taaactgtta aaaatgtatt ggttattcgg aaagaaatct      4680
     aaacttagtt taaataataa aatcttacta tacaagtcca tgataaggcc aatttgggca      4740
     tacgccagtc agttgtgggc ctgcgctgcc aattccaaca tacggaagat ggaaacggtc      4800
     cagaacaaaa ttttaagaca aatagcaaac gctccatggt atatgaggaa cgatgatatc      4860
     agatctgaac tcggcttaga aagtctggac gttttcatct cccgtatgta cggaaggtat      4920
     gaagagcgtc tggaatccca tcccaatcca gaggcaatta agcttctgga ctgggcaggg      4980
     gagaccagac gtttaaagcg caggaagcca cacgaacttt acacacctga cttccgmaaa      5040
     atttaaatag caccttcaac ttcacgggct ctattcccct ctacctttgt cggcaaggga      5100
     atatcccaac gataaagaca aaaatttkct agtaaaatag tttatttatg tacaagttct      5160
     tatagttagg ttttttagca ctttttacca atttctcaat tctgtttctt ttaatttttt      5220
     aatcttgtct ttgtctagta cactttctca ttctcgatta gcttttsttt tccacgtcca      5280
     tttttactca taattttaat ttcaacattt aaacaatttt aaccaccatt ttctagtctt      5340
     tcaaattttg tcttttcttt ttattagtgt caatagacca ccaaaaagtg cctttcttat      5400
     tctcgtatac ttacagtgtt aaatttaagt gtaaaaagac tcgatgagtc tgatcacatt      5460
     gttgtattgt atatttaatt gtatataata ctgaataaaa aaaaaaaaaa aaaaaaaaaa      5520
     aaa                                                                    5523
//
ID   Jockey-9_DAn repbase;    DNA;    INV; 4704 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4704
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 390-390 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(297..746,644..1798)
FT                 /product="Jockey-9_DAn_1p"
FT                 /translation="MAKARXATLATNAVTVTSVSNVSTCTVASSSSGIPIT
FT                 STIGSSLQTNVSATAMPTKGCSFQASGRVLRRKRTPSDLNKDLENPKKSKT
FT                 NVLNANGKQKGALTSTGLHNNRFALLDEEEASTDEMDISEGHLPIDSQTIP
FT                 IQSKDNSIGLRRRGFHRRNGYKRGSPXHRFANNTHTEQRQFNRAPLTNMKP
FT                 PPICVPKVNNVLTLERTLNEIISADNYSIRTSKFGVTRIYTDGADAFRKVV
FT                 RCLTALNCEFWHHQLREDKPFQLVLKNIHSTVPKEEIERCFTDKGFTVLNV
FT                 YCPRKPGWRVHNGNVDEENNDEGSRQNLFFVNLKLTPNVSESLKVKQIGRH
FT                 RVTVEKATRNKDLVQCYKCQNFGHTRNCCFIKPVCGNCAGDHATDSKSCEA
FT                 LLRNQIMCANCGENHPASFKGCKVRLELSRKLKPGARLGNLTGNRVINXSK
FT                 LFSSMSSTRAGVSYADMARSNSRDSDSAETRQTFIHVQREQQNSNENLTAI
FT                 EKAILDINTRLDQLFKLVMETIESNKAFRDLVQILISKK"
FT   CDS           join(1798..2148,2175..3260,3155..3895,3754..4524)
FT                 /product="Jockey-9_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTVSNIKIGLWNARGLVRKNEELRLFLIGNSXDIMLI
FT                 TETHMRPGLRFFLPGYDQYFANHPNTTXKGGSXIFIKTSIHHSQNESTTRN
FT                 NLQQTSVNVTTNDGVVRIAGMSSFQRTMVSHLAPKFVAXGDFNAKHQWWGN
FT                 LRSCCRGKRLQEAIASSSCQILATGSPTFFSSNSRLTPTALDFFIVNGVPL
FT                 NKLSIATNYELTSDHLPIVATXSHIPQFKTRRKSILPPGSSPEKFMEALDR
FT                 IIHLNIEINQPEDIDDVFSVELLMEKIHMAANFARSSQNHRTNHNRSSLIP
FT                 LNAQILIQLKRRARREYTRTGDIRVHRIYKRLSNRLSKALEKNKQDHFDQF
FT                 LENAGTDASSNYTLWKLTNRFKRQVITKAPIRNPAGGWCYTSQQKADIFAD
FT                 SLEDRFKPFNLTPIGNQFIIKMVLDRPFQMALPTNPVTLTEVVSLIGKLKN
FT                 KKAPGARSSFLIIRHLRFFLLKLXFSLSYYSTAFKQKSSRSKIFLLDNKAL
FT                 KILPTKAXLFIVLLFNSVLRLSYFPSAWKSASITMIAKSGKQPTDVDAYRP
FT                 ISLLPALEKMMERIILDRILKLESVSSAIPRWQFGFRKGHGTPEQLHRVVN
FT                 FALEAMESKMYAVAVFMDIKQAFDRVWHDGLLCKLKTILTPXLFLLIKSFL
FT                 SERKFSVVVDGETSSKRPISAGVXQGLCSRSTLSHCTLLTCQTPGAVXRLM
FT                 MKTSSLLRMQMTQPCLFVIHALIPQHVHIVSLYTSDMPDSWGCTQVDDENI
FT                 LIATYADDTAVLVRNSCIDTATLGLQEYVSRFEKWTTDWNIGINCSKCACV
FT                 TFTTRTKICPGISMLGSALRHENTYKYLGVTLDRELNFQKHTTILKQTVLS
FT                 KAAKRSWILSPRNKLSLSNKVRIYKSILSPIWKYALQVYGITAKXNMNKIR
FT                 VAQSKVIRKMCNAPWYMRTRDIEKDLKIPKVGDVCRIHAENYLKRLGNHPN
FT                 ALAKRLLRRPRIRRLKRFHPHDLPLRYI"
XX
SQ   Sequence 4704 BP; 1500 A; 995 C; 934 G; 1243 T; 32 other;
     tcaktctgtw acgagctttt cgacgggacg catgtgcagt gcgggtgccg gagaaaattt        60
     gtgaaaactg tgttttttaa gaaaaggaca agtccacaat agtggcgaag taactmaaat       120
     tgacgtgaga agtcaaaagc agtggaaatt ctgttsagtg aaascgagat aaacttaatt       180
     accwaagtka aaactttttg tgcaattggg tcaaatgctg atgckgacta asagccgtwm       240
     ttgctagaaa kgcggctcaa cggcaamtgg wtgcawttaa mcaccctcct gmggatatgg       300
     ccaaagcccg kwctgccact cttgctacca acgctgttac tgttacaagt gtctctaatg       360
     tgtcaacatg tactgtcgca tcatcctcta gtggtattcc aattacttct actattggat       420
     cttcattgca aacaaatgtc agtgctacag caatgcctac aaaaggatgc tctttccaag       480
     cttctggacg tgtacttcgc agaaaacgga ccccctctga tctcaacaag gatttagaaa       540
     atccaaagaa aagtaagaca aatgtactga acgctaatgg taaacaaaaa ggtgctttga       600
     cctcaactgg gctacacaac aaccgattcg ctcttcttga tgaagaagag gcttccacag       660
     acgaaatgga tataagcgag ggtcacctwc ccatagattc gcaaacaata cccatacaga       720
     gcaaagacaa ttcaatcggg ctccgttgac aaatatgaaa ccaccaccaa tttgtgttcc       780
     caaagttaac aatgttctta cgctggaacg taccctcaac gagatcatct ctgcggataa       840
     ttatagcatt cgtacatcaa agtttggtgt tacccgcatt tacacagacg gcgctgatgc       900
     gttccgcaag gttgtccgtt gcttaacggc tttaaattgc gaattctggc atcatcagct       960
     tcgtgaggac aaaccgtttc agctggtact gaagaatatt cattcaactg ttcccaaaga      1020
     agaaatagag cgttgcttta cggacaaagg cttcacggtt ttaaatgttt attgcccaag      1080
     aaagcctggc tggcgtgtac ataatggaaa tgttgacgaa gaaaacaacg acgaaggttc      1140
     taggcaaaac ttatttttcg taaaccttaa actgactccg aatgtttctg agtcgcttaa      1200
     agttaagcaa attggacgac acagggtcac agtggagaag gctactcgta ataaggattt      1260
     ggttcaatgt tataaatgtc aaaattttgg tcacactcga aattgttgct ttattaagcc      1320
     tgtctgtggt aactgtgctg gagaccatgc aactgattct aaatcatgcg aggcactgct      1380
     cagaaaccaa ataatgtgtg caaactgtgg ggaaaatcat cctgccagtt ttaaaggatg      1440
     taaagtcaga ctggaattaa gtagaaaact gaagcctgga gcgagattag gtaaccttac      1500
     cggaaataga gtaattaatc anagcaagct tttctcttcc atgtcaagta ccagagccgg      1560
     cgtttcttat gctgatatgg cgagaagcaa ctctcgagac agtgatagtg ctgaaactag      1620
     acaaaccttc atacatgtac aaagggagca gcagaactcc aacgaaaact tgactgctat      1680
     tgagaaggct atcctcgaca ttaatactag actagatcaa ctgttcaaac tagtcatgga      1740
     aactattgag tcgaataagg cattccgcga tctggtgcag attcttatat ctaaaaaatg      1800
     acagtctcta acataaaaat cggattatgg aatgccagag ggctagttag aaaaaacgaa      1860
     gagctccgtc tctttcttat tggaaactca mttgatataa tgctcattac cgagacacat      1920
     atgcgtcctg gcctaagatt tttccttcct ggttatgatc aatactttgc caatcaccct      1980
     aatacgactg scaaaggtgg ctctkcaatt tttatcaaga ctagcattca tcactctcag      2040
     aacgagtcta caacgcgtaa taatctacaa caaaccagtg tcaatgttac aactaatgat      2100
     ggagttgtta gaattgctgg aatgtcttcc ttccaacgaa ccatggtcta aaaacgattt      2160
     tgaccaattg ttgatctcac ttggccccaa aattcgtwgc tgkaggagac tttaatgcta      2220
     agcaccaatg gtggggcaat ttaaggtcct gttgccgagg aaagcgactt caagaggcca      2280
     ttgcatccag ctcttgtcaa attttagcta ctggtagccc tacctttttc tccagtaact      2340
     ccagactaac acctacagct ctggactttt tcattgtaaa tggcgtccca ctcaacaagc      2400
     tatcgattgc aacaaactac gagctgactt cagaccattt accgattgta gcaaccmtaa      2460
     gccacattcc acaatttaaa actagaagaa aatccatact gccgcctgga tcctctccgg      2520
     aaaaattcat ggaagccctt gacagaatca ttcatctcaa cattgaaatc aaccaacctg      2580
     aagatattga tgatgtcttt tcagtagaac ttttaatgga aaaaattcac atggctgcga      2640
     attttgctag atccagtcaa aatcatcgca cgaatcacaa cagaagtagt cttatcccgc      2700
     taaatgctca aattctaatt cagcttaaaa ggagagctcg tcgtgaatac accagaacag      2760
     gggacatacg cgtccataga atatacaaaa gactctcaaa tcgtctcagc aaagctctag      2820
     agaaaaacaa gcaagaccat tttgatcagt tcctggaaaa cgcaggtact gatgcttcgt      2880
     ccaactatac cttgtggaag ctaactaatc gcttcaaaag gcaggtcatc acgaaggctc      2940
     cgatcaggaa ccctgctggt ggatggtgtt acacaagtca gcagaaggct gatatttttg      3000
     cggacagcct agaagacaga tttaagccat ttaacctgac tccgattgga aaccaattca      3060
     taattaaaat ggttctggat agaccttttc aaatggcgct tcccacaaac ccagttaccc      3120
     tcacagaggt tgtgtccctg atcggaaagc ttaaaaacaa aaaagctcca ggagcaagat      3180
     cttccttctt gataataagg cacttaagat tcttcctact aaagcttkgc ttttcattgt      3240
     cttactattc aacagcgttt tgagattaag ctatttccca agtgcatgga aatctgcttc      3300
     cattacaatg atcgcaaaat ctggaaagca gcccacagat gtggatgctt acagaccaat      3360
     tagtctgctt ccagcacttg aaaaaatgat ggaacgaatc attttggatc ggatccttaa      3420
     gctggaatct gtaagcagtg caattccaag gtggcagttt ggcttccgaa agggtcatgg      3480
     tacacctgaa cagctacatc gtgtggttaa cttcgctctg gaagctatgg agagcaaaat      3540
     gtatgcagta gctgtcttta tggacataaa acaagctttt gacagagtat ggcatgacgg      3600
     tctgttatgc aaactaaaga caattctgac gccanaactt ttccttttaa ttaaaagctt      3660
     tctttcggag aggaaattta gtgttgtcgt cgacggtgaa acttcttcaa aacgacccat      3720
     ctcagctgga gtancccaag ggctgtgttc taggtccaca ttgtctcact gtacacttct      3780
     gacatgccag actcctgggg ctgtacncag gttgatgatg aaaacatcct cattgctacg      3840
     tatgcagatg acacagccgt gcttgttcgt aattcatgca ttgataccgc aacattaggt      3900
     ctacaggaat atgtttcccg ctttgaaaaa tggaccacgg attggaatat tggtatcaat      3960
     tgcagcaaat gtgcttgtgt cacatttaca acaaggacca aaatctgtcc tggaatttct      4020
     atgcttggtt ctgcattacg ccatgagaac acatacaagt acctcggggt gactttagac      4080
     agagagctaa attttcaaaa gcacacaacc atcctgaaac agacggtact ttcgaaagca      4140
     gcaaagaggt cctggattct gtcgccgaga aacaaactat cattgtccaa caaagtacgc      4200
     atatataaat ctattttgag ccccatttgg aaatatgcat tacaagttta tggaataacg      4260
     gcgaaaamaa acatgaataa aataagagtg gcccaaagta aggtgataag gaaaatgtgt      4320
     aatgcccctt ggtacatgag gacgagggac attgaaaagg acctcaagat ccctaaagtg      4380
     ggagacgttt gcaggataca cgctgaaaac tacctcaaac gccttggtaa tcaccccaac      4440
     gccctggcaa aaagattgct tcgtcgtccc agaattagaa ggctaaaaag attccacccg      4500
     catgacctac cgttgcgtta catataaaag ttcctaataa taattaataa attaaaattc      4560
     aaataatatc atctgtaata taacataaca caaatttcta aattctcgta gtaaatctac      4620
     cttaattgtt aatgttgcta ctaggtggca gtatacttgt taattttgaa taaatataaa      4680
     cgttttaaaa aaagaaaaaa acaa                                             4704
//
ID   Jockey-9_DBp repbase;    DNA;    INV; 976 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-976
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 715-715 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..439,363..827)
FT                 /product="Jockey-9_DBp_1p"
FT                 /note="a part of reverse transcriptase."
FT                 /translation="RIYVXQKNDSSALNRINAGVPQGSVLGPILYTLYTAD
FT                 MPGTNTCTVATYADDTAILATSISKNEASELLQRELSLIEDWFLRWKIRIN
FT                 SLKSVQITFSLRPGSCPNVALNGSPIPQTTCVKYLGLHLDTRINMEKSYQS
FT                 KMSTAQTSISGCISTRGLTWKNHIKAKCQQLRLKTLKMSWLLRRKSQTTLE
FT                 NKIRLYKAILKPVWTYAMQLWGTASNSNIEILQRYQSKTLRQIVNAPFYVT
FT                 NANIHKDLNIPTIKEEINKISKKYIDRLHNHENNLALNLVDNSLTVRRLKR
FT                 YHILDLPDR"
XX
SQ   Sequence 976 BP; 368 A; 213 C; 153 G; 240 T; 2 other;
     gaggatttac gtkcakcaga aaaacgactc atcagcacta aatcgcatta acgcaggcgt        60
     cccacaagga agcgtactgg ggccaattct gtacacccta tacacggctg acatgccagg       120
     tacaaacaca tgcactgttg caacatatgc tgatgataca gccattttgg ccacaagcat       180
     atccaaaaat gaagcatccg aactcctgca gcgtgagcta agcctaattg aagactggtt       240
     tcttcgatgg aaaataagaa tcaactccct gaaatcagtc caaatcactt tttcattaag       300
     accaggcagc tgcccaaatg ttgcacttaa cggctcacca attccacaaa ctacatgtgt       360
     aaagtatctc gggttgcatc tcgacacgcg gattaacatg gaaaaatcat atcaaagcaa       420
     aatgtcaaca gctcagactt aaaacactaa aaatgtcctg gttgttaaga cgaaaatcac       480
     aaaccactct ggaaaacaaa atccgcctct acaaagccat actaaagccc gtctggacct       540
     atgcgatgca gctctgggga actgctagca actcgaatat tgaaattctt cagcgttacc       600
     aatccaaaac gttgagacaa attgtcaatg ctccattcta cgtaactaat gcaaacattc       660
     ataaagatct caacatccca accataaaag aagaaataaa taaaattagt aagaaataca       720
     tcgacagact ccacaatcac gaaaataatt tagccttaaa tctagtggac aatagcttaa       780
     cagtaagaag actgaaaaga taccatattc tcgatcttcc cgatagataa attcaaaata       840
     ctgtaaatat gtaatatata atagtagggc tcattggaaa actgctattt ctgttaactt       900
     aacattcttt ataaaattta cttattgttt ttttagtaga cagattgtaa ataaataaat       960
     aaacacaaca aaaaaa                                                       976
//
ID   Jockey-9_DEl repbase;    DNA;    INV; 5625 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome: a
DE   sample fragment.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5625
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Direct Submission to Repbase Update (28-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental, single-copied sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1647
FT                 /product="Jockey-9_DEl_1p"
FT                 /translation="VAAQKYKPGPQSSKRKKTLALTLSRIKHPRLSSAVHT
FT                 STAANPSSAPSSSVATQPGAVDQPSDDNQVCSDPQPSCTSHPSAAAHFGHT
FT                 PNPDLRSNPGAAKRLYSKAPSTSRQALANLRENLEGTASNQDDKEKFPAIF
FT                 LHNVTLIQPLLDSLLGTPGLADKFTTTCIKGNQIKITCKDKRSYLLILAKL
FT                 EANNQQTHTHQLKSERGFRVVIRQLHHSTSCSLISKQISDLGLTVRYVNNI
FT                 KHRRSRKPLDLFEVELAPTPDNLNDKILAINMLGNQRVTVERQLRRLDPAM
FT                 CHRCQQFGHTKNFCRREFVCQKCAGPHPSTDCAQVRIPNPKCANCGLGHIA
FT                 SYKGCSAYKQAQARLVAYGAHIAIKNRKHAYTNAVNSNLPQPPAERGLPQA
FT                 HNPTESQTGLNQRNPFRQSPSSANKATYSQIVKKPAQKSSVHNPAAVHLKK
FT                 FQQKLLAERNFADLPDNSRLSPYVSTPQKQQGQHGPQPWTPNSPRHQNHGP
FT                 TVSNHDMLLMVKESVAVVNEMGKKMDSLLNLLHLFISNSKLNINTNANDII
FT                 NA"
FT   CDS           join(1643..5251,5255..5539)
FT                 /product="Jockey-9_DEl_2p"
FT                 /translation="MPNLANTYQRHLNIPNNINNSTNTRTITTQTFNPTTH
FT                 TLNSNKIKIAYWNACGLNNKITELDFFIQSNNIDIMMIIETRTAFNPIIFP
FT                 TTTNKLSIEGYVFYTASHPSSIRSGGVAIYVRACLNHIALEPIEEEFLQVA
FT                 PIVLTIGHNKKIVIAPIYCPPTYNWSSTHFKEFFGYMSRLSPNSKFIICGD
FT                 WNSKHSWWGNTRSCPRGRSLLNAIHLNSRLNVLATGGATHYPFDKRKRPSA
FT                 IDFAVYSGFSCDRIRTYSAVDLRSDHLPIFIELSVNGPSNTQSINRKLLPH
FT                 NANVNKFQKILSDSILLNTEIRSGQDIEDAINIFNRNIYHAAQSATRYSNS
FT                 RQSNRPGQIFLDHRLRNLQNVKKACKQDLMRRQSSDARKNYKLANKKFLNA
FT                 LKEAKTKRINNIFNKIDPTDRYRMQKLWKITNQFKRQPEPNWPLKTHINSI
FT                 SGSNSNVNNRQNFNWTKSSEEKVELFVKHLEERFSPKLTNSEEFRKQIITE
FT                 KEEIVQHKRLTVAPNWIQRESFGGSQNGVDAPFRPISPSEVISTIKLLQNK
FT                 KAPGMDQIDNHVIKVLPQKAIIYLTNIFNSILRYGHFPEQWKCAAISMIRK
FT                 PGKNPHEVSSFRPISLLAGFSKIFETLLMDRMFACKDFELAVPMHQFGFRK
FT                 EHNTEQQLRRVTQYILTAYEKKMFCSGVFIDVSEAFDRVWHDGLLLKLAKL
FT                 LPFCLYRVLESYLTDRTFYVNGNSGITSRKGKIGAGVPQGSVLGPVLYTIF
FT                 TSDMPLPTIAGQQHTHTSDLFNNILLSTYADDTIILCASKEAHSAINTNQK
FT                 YLSLITKWASQWCITLNANKTVHVLFSRRSTTSLLGPKSPCMNGVEIKNET
FT                 KYRYLGLLLDRKLILHLHTTQLINRLRSTAFGLNWILGNQSKLPTSSKITL
FT                 YKQLIAPVWQYALPIWGSLISNTRFKQIEATQNKIIRRIVNASRYIRNQDI
FT                 RELYDIKSAEETFHQASNRLAASLFCHPNPEAIQLVTQPFIPERLEWPRYK
FT                 TQLERHFLPLNHQPQQCPNQLQRQYPTLIRLEQQLLERQSLERQKLLAEER
FT                 VNLQRSKYESALATGIPLERPSICWVNAMSQDLRKGLTSRWEMAQKIKYQP
FT                 EYIQRLIMTPLQPHEFPPPTQEQQLEAGLLRLKLQLENMIDNSNDRDLLSG
FT                 VRKTITPLLPNSFLSLFQPITTACPVSKTASIAALWKTEVLKPPSGVQQVR
FT                 YLLTTNAPIIWDKITTVDKCFILMAKKKQEHSGKTIFHCSLKFISSLSCIG
FT                 GSVNSAHCPENSFSCLWFPFESSGRHSSDLVTLKKQQ"
XX
SQ   Sequence 5625 BP; 1801 A; 1370 C; 998 G; 1456 T; 0 other;
     gttgctgcac aaaaatataa acctggtcca cagtccagca agagaaaaaa gactcttgcc        60
     ctaacgctct caaggattaa acaccctaga ctttcatctg ctgtccatac tagtactgcc       120
     gccaatccta gctctgcgcc tagttccagt gttgctaccc agcctggtgc tgttgatcag       180
     cccagcgatg acaatcaagt ttgttctgac ccccagccca gctgtacttc ccatcctagt       240
     gctgctgccc actttgggca cacccccaac ccggacctac ggtccaaccc gggtgctgcc       300
     aaacggctct atagtaaggc gccgtcaaca agtaggcaag cactggccaa tttaagggaa       360
     aacttggaag gcactgcaag taatcaagac gataaagaaa aatttcctgc aattttcctt       420
     cataacgtca ctcttatcca accattactg gactctctcc tgggtactcc aggtctagcg       480
     gataaattta ccaccacctg cataaagggc aaccaaatta aaattacatg taaggacaaa       540
     cgatcttatt tactaatact tgcgaaactt gaggcaaata accagcagac ccacactcac       600
     cagctcaaat cagagcgtgg ctttagggtt gttattaggc aattacatca ttccacttcc       660
     tgctccttga tcagcaagca aattagtgat ctaggtctga ctgtacgcta cgtaaataac       720
     attaaacacc ggcggagtcg caagcctctt gatctttttg aggttgaatt ggcccctaca       780
     ccagacaatc ttaatgacaa aatccttgcc attaacatgc taggcaacca acgcgtaact       840
     gttgagcgcc agttgcgtcg cctagacccc gccatgtgtc accgctgcca gcagtttggc       900
     catactaaga acttctgccg acgtgagttt gtatgccaga aatgcgcagg acctcatcct       960
     tccactgact gcgcccaagt tcggatacct aatcccaaat gcgccaattg tggcctggga      1020
     cacatagcta gctataaagg ctgttctgcg tataagcagg cacaagcaag actggtagca      1080
     tacggtgccc acatcgccat taaaaacaga aaacatgctt atacaaacgc tgtgaatagc      1140
     aatcttcccc agccacctgc ggagaggggg ctacctcagg cacacaatcc tacggaatct      1200
     caaactggac ttaatcagcg gaatcccttc cggcaatcac ctagctcggc aaataaagcg      1260
     acatatagtc agattgttaa aaaacccgcc caaaagtcgt ctgtccacaa cccagctgct      1320
     gtccacttaa aaaaatttca acaaaaactg cttgctgaaa ggaattttgc agatttaccc      1380
     gacaactcac gtttgtctcc ctatgtaagt acgccacaaa aacaacaggg tcagcacggg      1440
     ccccagcctt ggactcctaa ttctccacgt catcaaaatc atggacctac tgtctcgaac      1500
     catgacatgc tactgatggt aaaagaaagc gtcgccgtgg ttaatgagat gggtaaaaag      1560
     atggactcct tattaaacct tttacatttg ttcatttcaa attcaaaact aaacataaat      1620
     acaaatgcta atgacataat taatgcctaa tctagccaat acataccagc gccatttaaa      1680
     tattcctaac aatataaata attctactaa tacccgaaca atcacaaccc aaacttttaa      1740
     tccaactacg catacgctca acagcaacaa aattaaaatt gcttattgga acgcttgtgg      1800
     gctaaacaac aaaattactg aactagattt ctttatccag tcaaacaata tagacatcat      1860
     gatgataata gaaacccgaa ctgcttttaa ccctattatt tttcccacta ccactaataa      1920
     actcagtatt gagggatatg ttttttacac tgcctcacat ccttcttcaa taagaagtgg      1980
     tggagtagcc atttatgtca gggcctgcct taatcatatt gcacttgaac ccattgagga      2040
     ggaatttctt caagtagctc ccatagtcct gactattggc cacaacaaaa aaatcgtcat      2100
     tgctcccata tactgtcctc cgacatataa ttggtcttcc actcatttta aagaattttt      2160
     cggttatatg agcagactca gccctaactc aaaatttatt atatgcggtg attggaactc      2220
     gaaacactcc tggtggggta atactcgttc atgcccaaga ggccgttctt tgttaaatgc      2280
     tattcacctg aattcacggc taaatgtgct ggccacaggt ggggcgactc actacccgtt      2340
     tgacaaaagg aaacgccctt cagcaataga ctttgctgtc tattctggtt ttagttgtga      2400
     cagaattaga acatattctg cagttgatct gcgttctgat catcttccaa tattcatcga      2460
     gttatccgtc aatgggcctt caaataccca atcaataaat cgcaagctgc tgcctcataa      2520
     cgcaaacgtc aacaagtttc aaaaaatcct atcagactct atcttactta acacagaaat      2580
     tagatctggt caagatattg aggacgcgat taacatattt aatcgtaata tctatcatgc      2640
     agcccaatct gcaacacgct actcaaactc taggcaatca aaccgcccag gtcaaatttt      2700
     tcttgatcat agactgagaa acctacaaaa tgtcaaaaaa gcttgtaaac aagatctaat      2760
     gagaaggcag tcttcagacg cccgaaaaaa ttataaactt gcaaacaaaa aattcttaaa      2820
     tgcactaaag gaagcaaaaa caaaacgaat taacaatatc tttaacaaaa tcgaccctac      2880
     tgatcgctat cgtatgcaga aactttggaa aattacaaat caattcaaaa ggcagcctga      2940
     gccaaactgg ccattaaaaa cacacataaa tagcattagt ggtagtaata gtaatgttaa      3000
     caataggcaa aattttaatt ggacaaaaag cagtgaggaa aaagtagaat tatttgtaaa      3060
     acatcttgag gaaaggttct ccccaaaatt aacaaattct gaagaattta gaaaacaaat      3120
     tattactgag aaagaagaaa ttgtacaaca taaaagactc accgttgctc caaattggat      3180
     tcaaagagaa tcctttgggg ggagccaaaa tggagttgac gctccttttc gtcccatctc      3240
     gcctagcgaa gttatttcaa cgattaaact tcttcaaaac aaaaaggccc ctgggatgga      3300
     ccagatagac aatcacgtta tcaaggttct tccacaaaag gcaattattt acctgacaaa      3360
     catttttaat tcaattctca gatacggcca tttcccagag caatggaaat gcgcagctat      3420
     ttccatgatt agaaaaccgg gaaaaaaccc tcacgaagtt tcctctttca gacccattag      3480
     cttgctagcc ggcttctcaa agatctttga aactctgcta atggatagga tgtttgcgtg      3540
     caaggatttt gagttggccg tacctatgca tcagttcgga ttccgtaagg aacacaacac      3600
     agagcagcaa ctgcgaagag ttactcaata catcctcact gcatatgaaa agaagatgtt      3660
     ctgttccgga gtctttattg acgttagcga ggcttttgat cgggtctggc atgatggcct      3720
     gttattaaaa cttgctaagc ttcttccatt ttgcctctat agggtattgg aaagttatct      3780
     cacagatcgt accttctacg taaatggaaa ttctggaatt acatcaagaa aggggaagat      3840
     aggcgctgga gtaccacaag gaagcgtcct tgggccggtc ctatacacta tcttcacctc      3900
     tgacatgcct ctacctacga ttgctggaca gcagcatact cataccagtg atctgtttaa      3960
     caacatcttg ctctccactt acgctgacga cacaattatt ctctgtgcca gcaaagaagc      4020
     ccactctgct attaatacaa atcaaaaata tctctcgtta atcaccaaat gggcctctca      4080
     atggtgcata acactcaatg caaacaaaac agtgcatgtc ctcttttcca ggcgctctac      4140
     aacaagttta ctcggaccaa aatcgccctg tatgaatgga gttgaaataa aaaacgaaac      4200
     caagtatcgc tacttggggc tcttactgga tagaaaacta atactgcatc tgcatacaac      4260
     gcaacttatt aacaggcttc gttccacagc ttttggttta aactggattt taggaaatca      4320
     aagtaaactg ccaacaagta gcaaaattac cctttacaaa caattaattg ctccggtttg      4380
     gcaatacgcc cttcctattt ggggctcttt gatatccaac acaaggttca agcaaattga      4440
     agccacccaa aacaagataa ttcgacgcat agttaacgca agcaggtata ttagaaacca      4500
     ggatatccga gaactctacg acattaaatc ggcagaggaa actttccatc aagctagtaa      4560
     tagacttgct gcttcactat tttgccatcc taaccctgag gcaatacagc tggttactca      4620
     gccattcatc cctgagaggc tggaatggcc tagatataaa acacaactgg aacgccattt      4680
     tctgccctta aaccaccaac ctcagcagtg ccctaatcag ctacaacggc agtatcctac      4740
     cctaatccgc cttgagcagc aactactaga acgacaatcc ctagagaggc aaaaactcct      4800
     tgcggaagaa cgtgtaaact tacaaaggag taaatacgaa agcgcactcg ccactggtat      4860
     accacttgag cggccatcta tctgctgggt caatgccatg tcacaggatc ttcgtaaagg      4920
     acttacatct agatgggaga tggctcaaaa aataaaatac cagcctgaat atatacagag      4980
     acttataatg acacctctcc aaccacatga atttccacca cctacccaag agcagcagct      5040
     tgaggctggc ctgttaaggc ttaaactgca actagaaaat atgattgata attctaatga      5100
     cagagatttg cttagtggag tcagaaaaac aataactcct ctgcttccta actcttttct      5160
     cagcctcttt cagcctatca ctactgcctg cccagtatct aagaccgctt ccattgccgc      5220
     actttggaaa actgaagttc taaaacctcc ctaatctggt gtgcaacaag tccgatacct      5280
     tcttacaacg aatgcgccaa taatatggga caagatcacg actgtcgaca aatgttttat      5340
     tctaatggcc aaaaagaagc aagaacattc aggtaaaacg atctttcact gcagtctcaa      5400
     atttattagc tcattatctt gcatcggcgg ctcagtaaat tctgcacatt gccctgaaaa      5460
     cagcttttcc tgcctctggt ttccttttga atcctctggc cgccacagct ctgatcttgt      5520
     cacgctaaaa aagcaacaat aaaacgcagt taaatatctt tgtatgcaaa ttgctgttaa      5580
     aacccacaaa ttaacgttga acttattttt gatcggaggc gcttt                      5625
//
ID   Jockey-9_DEu repbase;    DNA;    INV; 718 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-718
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 955-955 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 718 BP; 219 A; 159 C; 142 G; 197 T; 1 other;
     cgattctatt tatagcatta atttttaatg ctattattag gatccaagta ttcccaaaac        60
     aatggaaact tgctgcgata ctgatgatcc ataagcccgg taaaccagag gttgaacctg       120
     agtcataccg cccaataagt ctcttaccct ccctgtccaa actgtgggag agactcattg       180
     caaatcgaat taccgagatt gtgtctcaaa acaatgtctt gccagatcat caatttggat       240
     ttcgaagagg tcacagcaca gtakaacagg tccacagatt ggttcaacat atcttgcagg       300
     ctttcgatga ccaggagtat tctaacgcgg tctttattga catgcagcaa gctttcgata       360
     aggtgtggca tgctggccta tgcacaaatt aaaagtctcc tacctgctcc gtactatgga       420
     cttttaagat cttatctgga agatcgagag tttaaggtca aagtaagaga tatattatcg       480
     aataactatc caatgagagc aggagttcct cagggcagtg tacttggacc gttgctatat       540
     tcgttgtata cttctgatat accaagccct aacagacaac atatgttaga cccctcaaaa       600
     acacttattg cgacatatgc agatgacatt gcagtcatct acaactcaag atgtcacaga       660
     gaagcagcca acggtctaca gaattacctt gccaccattg cagcttggtg caaacggt         718
//
ID   Jockey-9_DF repbase;    DNA;    INV; 4536 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4536
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 977-977 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4536 BP; 1246 A; 1294 C; 977 G; 1013 T; 6 other;
     ttaaatataa aaccccaagg ctttcgggaa gttctttcac tgtaggacta cagttgtcct        60
     acctatcttc acgtaagcaa tcgccaagtg aatcagctat aggtgattcc acagtttttt       120
     cacaagtact gggccccggc aaatgctggt ggtccactga tctccacgag gcgatctact       180
     gttcaagctt taagctttca accggtttgt gtctgagcta agcaacagcg acacacatta       240
     gaggacattt atcctgcata agtctaggcg gtcgtaagac cggcttagca tttgtctccc       300
     attttagtta attactcaac tttatttggt aaagtttctg ctaattgcta aaaatggaaa       360
     aatctcatca acaacaatcc atcgatttta aatcaatgag gaatactgct ggagcaactc       420
     ctgccgaact acgagccagt ttgcgagaca gtttaacgga cagctgctta aatgctggca       480
     gtacaaccag atgggctccc acaagctgca tcacaacttg tactgtcaca tcctcgatct       540
     catctccaat gacattcaca acaagctcga atggcagttt gtgttccgct gcagccagtt       600
     ctaggcatga tcctgcatct tctagcactt cattatgcaa ccccacccca ggctggcagc       660
     aagtcacagc aaagccaatc aaaggagcag caaagaagag agcaggtacc gttctctctc       720
     ctaaggtcag caaaagaaga cactataccg ccaaatccgg aaaccgcttc ataatcctaa       780
     gcgacgagga agaaatggac gtggggccct ccacttcgca agccgcgaaa aaccgcgccc       840
     aaagaaggcg acgcaacttt gcgccggcaa atccaacagc tcaggacaag cgccgcaccg       900
     caagccgctc gatctcccaa ggtcccaagg attatggttc ccggtgtggt cagctactct       960
     gcttctgcag tgagctggat gctctattgg aaacattact ccatcaaagc gctgaactca      1020
     ggtgactgtg ccgttcagtg caactcctcc gacgcctaca ggatcgtggc cagacacttc      1080
     cgcgaaaaag gaactgtttt ccaccaccac cagctgccag aagaccgacc ctttcgcatg      1140
     gtaatgagaa acattcacca tgacgtccca tcggaggaca tcattgagtg cctgcaggaa      1200
     gagggtcact gcgttctgcg catctacacc cctcgaaaca aggcaacaca gcttccgctt      1260
     aacatgaggt ttgtggacat taagaaggct gacaacaaca agcttctcaa aaacatctct      1320
     gctgtttgca aacacattgt gacctgggag aagccacgca aacaatccgg tcctgtacaa      1380
     tgccacagat gtcaggaata cggacatact aaatcatact gcacacggca ttacatctgs      1440
     agagaatgcg gagagaacca ccccaccctg gagtgcaagc tcggaaaaga tggccctagg      1500
     tgctgctttc actgcggcaa ctctmacgca ttccaccgaa aacgccgctc tgaatgccaa      1560
     gctggaacag ctttttacga ggctcgacag gatgatgtct ctggtagaga cgctaatgca      1620
     agcaatcctg cagacgcgtc cttcctcctc tactctccac aatgggagtt cttaaaatag      1680
     cctgctggaa ccccaatggg ctaagctcga aagcaaatga ggtcattgct ttcatagagc      1740
     tacacgaaat tgacatcctc ttgctgtcag aagtccgtct ctgctcgcgg tccaccttca      1800
     ggatccccgg cttcactttg cacaaagccg atcatccaga cgaccggaga catgggggcg      1860
     cagcgatcct cgtcaagtca ggcataaccc atcatactct ccttcactct ttcggaagag      1920
     cacattcaag ccgtctccat cgagatatct tcaagaagag ggaggtttaa cgtggcttcg      1980
     gtgtactgcc ctcctgcttt taggtggacg gaagcagact tcacgtcttt cctctctaat      2040
     ctcggagata agtttcttgc tgcaggcgat tggaatgcca aacacagatg gtggggcaac      2100
     cacagaatgt gtgccagagg ccggaccctc agctctgtcc tggccaatgt caatgtcgat      2160
     attgtwgcaa ctggagaagc cacctgctat ccctatcgcg caaacgccac ccccagtgca      2220
     attgactttg gcatctctaa aggsttcaga cagcagcagg tctccgtcag agtactcacc      2280
     gagctatctt ctgaccacct cccgctgctc ttcctgttaa atgaagaagc tcaattccac      2340
     aaaggagtcc ccaaaatgct acctgcacat gcaaacgttg ccaccttcaa gtcmtacatc      2400
     gatgctcaca ccgtgctcaa cacaccataa caacctgcag cgatctggak gcatacgtag      2460
     atagcttcac ttccacaatt actgaagccg cccagagagc tacgccacct cagcgccaat      2520
     ctggtctccc acctaccagg agggcgcccc tactaactcc ggaggcaagg gcactgctgg      2580
     accaaaaaag gcacctcaga aggcatttca ttgtgtcagg cgatcctgca actaagcagc      2640
     ttctatctag cattacaaat agactgcgca ggttgctagc gaaaacccgt caaaaaaaca      2700
     ttgataccct gctggaggga gctggcccgg acaattgcag cgatttttca atatggaagc      2760
     taacgagagg gatcaaaaga cagccgcttg tccaatcgcc aatacaaaac cacagtggcc      2820
     gctggctgaa gagcgactcc gacaaagcta acgcttttgc agaacatctg tctgccacct      2880
     tcacgccttt cgatcttcca gacgcttcac accgcgacga agttgcaaac ttcttaagcg      2940
     ctcccttcag ccagcgcgcc ctattaggca caccacgccg caagaagtca tgctgcagtt      3000
     aaaggcgctt aatttaaaaa agactcctgg acccgatggc atcgacaata gagcggcaaa      3060
     ggctcttcca cccaaaggag tgctagcgct ggtgaaaatt ttcaacgcca tgctaaacct      3120
     gggacacttt ccaagacagt ggaagcaagc ccggatcatc atgatcccaa agccaagcaa      3180
     gccactatct caaatcgatt cctaccgccc aatcagcctg ctatccactt tgtcgaaagt      3240
     gttcgagcgg attctactca gtcgactgtt ggaactacca caagtagaag gccatattcc      3300
     tcaacaccag ttcggcttca gaaaatccca cggctgccca gaacaagtcc atcgcctggt      3360
     caaccacatc acccacggac tcgagcataa actgcacact ataggcgtct tccttgatgt      3420
     taaacaagcc tttgacaagg tgtggcacga gggccttctt tacaaaatca aggaacttct      3480
     ccctgcaccc tattttgcca tcctaaggtc tttcattgcc gatcgaacct ttgttgtagc      3540
     agtaagggac tcactatcca gcttatcaca cattcacgca ggagtgcccc aaggaagtgt      3600
     acttggtccg ttcctataca ccatgtacac aagcgatatg ccagttccgt cgcccaccac      3660
     agacgctcgt atgcttctgg ctacttacgc cgacgacacg gccttgcttg catcccactc      3720
     gtctcagctg acagcttcgg ctgctgttca ggactggcta agtgcgatgg agcgctggac      3780
     caagcaatgg aacattgcta taaattgcag caagtcggca tgcgtcactt tttctttaag      3840
     acttgtgatc gacatcgtgc atacattcaa tggtgacacc attaaaaacg ccacctctca      3900
     ctgctacttg ggtgtacact tagatcactg gctcatatgg aacacccaca tcacggcgat      3960
     cagagccaag tgcgttcgca aactccagaa gctcgattgg ctcctgagat ccaaaagcct      4020
     ccagctttcg actaaagttt tgctcatcaa agcaatcctt acgccaacat ggacgtatgc      4080
     aatcgaggta tggggcaccg catccaagca ccagctaaac aggctgaggg tagtgcaggc      4140
     acgtgctgct cgacgggcat cgggacttcc ctggtatgtg acaaaccagg ccatccaaaa      4200
     cgacctacgc cttgttcctg tgggcgacct cctaaatcaa cacagccggc ggtactcgga      4260
     taggctaacg agccacccaa atccactggc tagcaggctg gccgacccgc aaacccttag      4320
     acgtttgaag agattccacc ccagcgatct gtcttcccgt gttgtacact aattttgtaa      4380
     atatatgtaa ataattgtaa attattgtat atagtccagg cccatatccc atatgtacca      4440
     tacacacccc atctcctaaa cgcccggtta tgctcagatg gtcctgaacg attccggcga      4500
     caataataaa tatcgaaatt aaaaaaaaaa aaaaaa                                4536
//
ID   Jockey-9_DPer repbase;    DNA;    INV; 4770 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.08, Created)
DT   10-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4770
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1659-1659 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           4..1032
FT                 /product="Jockey-9_DPer_1p"
FT                 /translation="MAELGYYVIFIRAIKGRSDGQPLDQFELEIAPKPDES
FT                 HHDVLQLTQLGNQLVTVERQAKPVDPAQCHRCQAFGHTRTYCRRSFVCMKC
FT                 AGAHASTACAKPRADAPKCANCQGAHISAYKGCPAFKAARGRLLSHRVAMQ
FT                 ELRRKRSSLLQPLPEQQPPPARTTPAHPGRRQQQQQQAQTPANPWRGQQQQ
FT                 AAWTPLNVSSPGRRRGQQHQQKQKQQQPIHTKKQTPAASGPRTGRRRPEQP
FT                 LSRSQAQQQQQLQQPQREQQQRQQQQHQLVNARSWQQPQQQRQFDPDHQQP
FT                 SSRCDGSCRQVILENIKRMTQLEKKIEEMTLLLSSFIPGQVNTNANDPSNA
FT                 "
FT   CDS           1010..4429
FT                 /product="Jockey-9_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQMTLPMPRHNYMRILSSNTSAESAPTIHCITQNDGT
FT                 IKIAFWNAGGVKNKIKELEMFMDREGLHVMMVIETRCKDINIDGYVTYYAK
FT                 NPTNRRRGGIATLVRTDVKHTALQPINSEKIQCAPVSLLPDDGSDRGTTVL
FT                 APLYCPPSYRWTKKEFHQLFTVFDITTSGSPNNKYIICGDWNAKHPWWGNF
FT                 RSCQRGRELFEATQLRKKHNVLATGAATHYPYDRRKTPSAIDFAITSGVQK
FT                 NQVMIHASMDLDSDHLPMVIHLYKPGQHNSSNKPTHISRLLPKGANKLKFQ
FT                 EYLEQNIHLNTEVNSGQDIDDAVDIFTKNITDAAAIASKKCPQPNTKAYYR
FT                 QHAILDGPTRQLLEEKQEKKRVFLALRTTESRKLYRKAQNKLSKALAATKT
FT                 EKINGKLRAISSTDGHNLAKLWQITKLIKKQPIPNWSVKTNDDEQIRWTRS
FT                 TLEKAEAFANHMEERLTPLHTSTATERTKIIEELTRQKRTMQDDNAANELQ
FT                 HKKHFTKPITLEELQKEIRLLKTKKAPGEDNIDNRLIKLLPKKANLYLLLI
FT                 FNSILRIGHYPRIWKHAEIVMIPKPKKNPSHMKSYRPISLLSGLSKVFERL
FT                 LLKRLLSEEAFHKAIPDHQFGFRKEHGAEQQLTRVTQFILRAYEEKQYCSA
FT                 VFIDVAEAFDRVWHEGLLSKLIKILPLRLYTILENYLSGRTFAIKCNDGIK
FT                 SRTGRITAGVPQGSVLGPILYTIFSSDMPLPALTHRSLHTNPGPKKMLLST
FT                 YADDTAILSMGDYPAMAVQRNNNYLTQLVIWAKKWSITINPIKTAHVIFSK
FT                 RRVQINNIPIKIDGKQVPVKKSTIYLGVKIDSGLTMSAHVTQLRIKMWARA
FT                 KKLNWLIGAGSKLAKKCKMLMIRQLIAPLWQYTLPVWGALCSNTQIKRIQG
FT                 PYNKLIRCSLKAGRYARNEALRARYDLLTVEELFQKASGRYAIALATHTNP
FT                 EARNLVANPFVPTRLLRPRYLNQITNHFIPLQAQANITQQQKQSLTTSTQH
FT                 APRETTNQLPTLLRIQEEAKEKQETARKELQRAKQMEERARRPASRYCESV
FT                 INVIKRRYANGQYTREEAIRQVEGQNLAVQRLVIPDYTPATIVISDEIPNG
FT                 PPSTAIDTAALVITISDEDSTNHLQAQLQPQE"
XX
SQ   Sequence 4770 BP; 1556 A; 1332 C; 1043 G; 839 T; 0 other;
     cagatggccg aattgggtta ttatgttata tttattagag ccattaaagg gagatccgat        60
     ggacagccgc tcgaccagtt cgagttggag atagccccca agccggatga aagccaccac       120
     gatgtcctcc aattaaccca gctgggcaac cagttggtga ccgttgagag gcaggccaag       180
     ccggtggacc cagcccagtg ccacagatgt caggcattcg ggcacacccg cacctactgc       240
     aggcgttcat tcgtctgtat gaagtgtgcg ggtgcccacg cgtccacggc atgtgccaag       300
     ccaagggcag acgcccctaa atgcgccaat tgccagggcg cccacatcag cgcctacaag       360
     ggatgtccgg cattcaaggc agcaaggggc cgccttctgt cccaccgagt ggccatgcag       420
     gagttgcgtc gcaagcgcag ctcgcttctg cagccattgc cagagcagca gccaccacca       480
     gcaagaacaa caccagcaca tccagggcgc cgacagcagc agcaacagca agctcaaacg       540
     ccagccaatc cctggcgcgg acagcagcag caggcagcat ggacgccact caatgtctcc       600
     tctcctgggc gacgaagagg acaacaacat cagcagaagc agaagcagca gcagccaata       660
     catacaaaaa aacagacgcc tgctgcctct ggcccacgca ctgggcgacg acgtccagag       720
     cagccattga gccgttccca ggcacaacag cagcagcagc tacagcagcc gcagcgcgaa       780
     caacaacagc gacagcagca gcagcatcag cttgtcaatg cacgctcctg gcagcagccg       840
     cagcagcaac gccaattcga tccagaccac cagcagccat cctcacgatg cgacggctcc       900
     tgcagacaag tcatactgga aaatataaaa agaatgacac agttagagaa aaaaattgaa       960
     gagatgacgc tattactttc ctcctttatt ccggggcaag tgaacacaaa tgcaaatgac      1020
     ccttccaatg cctagacata actatatgag aatcctatcc tccaatactt ctgccgaatc      1080
     tgcccctacc atccactgta taacccaaaa cgatggcacc attaaaatcg cattctggaa      1140
     tgcaggcggg gtaaaaaaca agataaaaga gctagagatg ttcatggacc gggagggcct      1200
     ccatgtcatg atggtcattg agacacgatg caaagacatc aacatagatg gatacgtcac      1260
     atactacgcc aaaaacccaa ccaataggcg tcgaggggga atagccacac tggtccgcac      1320
     tgacgtaaag catacagctc tccagccaat caacagcgaa aaaatccaat gtgcccccgt      1380
     ttccctatta ccagatgacg gtagtgatag gggaacgacg gttctcgcac cgctctactg      1440
     cccgccatcc tacagatgga caaagaagga attccatcag ctttttacag tctttgacat      1500
     aacgacgagt ggctcgccaa ataacaagta cataatatgc ggtgactgga atgccaaaca      1560
     cccttggtgg ggtaacttta ggtcctgcca acgaggaagg gaattgtttg aagcgaccca      1620
     gctccgaaaa aaacacaatg tcctggccac tggtgcggcc acccactacc cctacgatcg      1680
     gagaaaaact ccctctgcca tcgactttgc cattacaagt ggagtacaaa agaaccaagt      1740
     catgatccac gcctccatgg acctggattc agaccacctg ccaatggtaa tccacctcta      1800
     caagcctggc caacataact cctccaacaa gcccactcat atctcccgac tactgcccaa      1860
     gggagccaac aaactaaaat tccaggaata tctcgaacaa aatattcacc tgaacacgga      1920
     ggtaaattct ggccaagaca ttgacgacgc ggtggacatt ttcactaaga atattacaga      1980
     cgcggctgcc atcgcctcca aaaaatgccc gcaaccaaac accaaagcct actacagaca      2040
     acacgccatc ctcgacggtc ccactagaca actactggaa gaaaagcaag agaaaaagag      2100
     agtatttctg gcacttagaa cgactgagtc caggaagctc tacaggaaag cccaaaacaa      2160
     gctgagcaag gccttggctg ccactaaaac ggaaaaaatc aatggcaagt tgagagctat      2220
     aagctccacg gacggacaca acttggccaa gttgtggcaa attaccaaat taatcaagaa      2280
     acagccgata ccaaactggt cagttaagac gaatgacgat gaacaaataa gatggactcg      2340
     gagcaccctc gagaaggcag aagctttcgc caatcatatg gaggaaagac tcaccccact      2400
     tcacacaagc acagccacgg aaaggacaaa aataattgaa gaactgacaa ggcaaaagcg      2460
     gaccatgcaa gatgacaacg ccgccaatga gctgcagcat aaaaaacact ttacgaaacc      2520
     aattactctg gaggaactgc aaaaagaaat cagactacta aaaacaaaga aggccccagg      2580
     ggaggacaac attgacaata ggctaataaa actattacca aaaaaagcca acctctatct      2640
     cctgctaata tttaattcaa tcttacgaat aggccactac cctaggatat ggaaacacgc      2700
     agagatagtt atgatcccaa agccaaagaa aaatccctca catatgaagt cataccgccc      2760
     aatcagcctc ctatcgggcc tctcaaaagt atttgagaga ctcctgctca aacggctgct      2820
     gagcgaagag gcatttcaca aagccatccc ggaccaccag ttcggcttca ggaaggagca      2880
     tggcgcagag cagcaactga ccagagtcac ccaatttatc ctcagggcct acgaggaaaa      2940
     acagtactgc tcagcagtat tcattgacgt agctgaggcc ttcgaccgtg tctggcatga      3000
     aggattactg tcaaaactaa taaaaatact tcccctcaga ctctatacaa tcctagaaaa      3060
     ctacctgtct gggagaactt ttgccattaa atgcaacgat ggcatcaagt ctaggacagg      3120
     gcgaatcaca gctggagttc ctcaagggag tgtgctaggc cccatccttt acacgatctt      3180
     ctcctccgac atgccactac ctgcgctcac gcacagaagt ttacatacga atccgggccc      3240
     caaaaaaatg ctcctatcta catatgcgga cgacacggcc atactgagca tgggagacta      3300
     tcccgcaatg gcggtccaac gaaacaacaa ctacttaacg caactggtaa tatgggctaa      3360
     aaaatggtcc ataaccatca acccaataaa aacggcacac gtcattttct ccaaaagaag      3420
     agtacagatt aacaacatcc caataaaaat agatggcaaa caggtcccag tcaaaaaaag      3480
     cactatttat ctgggcgtca agattgacag cggacttaca atgagtgcac acgtgacgca      3540
     actccgaata aaaatgtggg ccagagccaa aaaattgaac tggctgatcg gtgcaggaag      3600
     caagctggca aagaaatgta aaatgctgat gataagacag ctcatcgccc cactctggca      3660
     atacacccta ccagtgtggg gtgccctatg ctccaacacg caaatcaaaa gaatacaggg      3720
     accgtacaac aaactaataa gatgctctct taaagcggga agatatgcca gaaacgaagc      3780
     acttagggcg agatacgacc tactcactgt ggaagagctt ttccaaaaag ccagcggccg      3840
     atacgccatt gccctagcca cccacacaaa tccagaagcc cgcaatctgg ttgccaatcc      3900
     atttgttcca acaagactac taaggccgcg gtacctaaac caaataacca accactttat      3960
     acctctgcag gctcaggcta acatcacaca acagcaaaag cagagcctca ccactagcac      4020
     ccaacacgcg cctcgcgaaa ccaccaacca gctacccact cttctgcgga tccaagagga      4080
     ggctaaggaa aagcaggaga ctgcaagaaa ggaactgcaa cgagctaaac aaatggaaga      4140
     gagagcacgc cgaccagcaa gccgatactg tgaatcagtt ataaacgtaa tcaagcgacg      4200
     ttacgctaat ggccagtata caagggagga ggccattagg caggtggagg gccaaaacct      4260
     ggcagtgcag aggctggtga tccctgacta cacgccagcc accatagtca tatcggacga      4320
     aattccaaat ggcccaccct ccacagcaat tgacactgca gcactagtaa taacaatctc      4380
     agacgaagac tcaacaaacc acctacaagc tcaactacag ccccaagagt aactacaata      4440
     gacacagctg ctgacccatt aaccgcgtta gatcgaactg aaggagctat ccaaatactc      4500
     acagcactcc gaagaactgc ccatccttcc atcaatctat tggaaagtgt actcccgtat      4560
     ccgattggcc gaatgggggc cctctgtata tttcctccgt cactattgag gatatagggt      4620
     ccctcagacg actgaatgag atcgacgcca ttccagctgg cgacacacac acgcacactc      4680
     actctcttca ggtcaaagga gaggggtgat ggcgggaacg tgagcgccta aatcatgggg      4740
     gctgtagcca gcacacctga aacaaaaaaa                                       4770
//
ID   Jockey-9_DRh repbase;    DNA;    INV; 3542 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-3542
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1686-1686 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..3401
FT                 /product="Jockey-9_DRh_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANLRITMWNANGVSRHKHEITQFLNENHIDIMLLIE
FT                 THLTNKYNFQIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFHERFATNYL
FT                 QATSIKVQSDSGPLSIAAVYCPPRFTITEGQFMDFYNLLGDRFIAAGDYNA
FT                 KHTHWGSRLVTPKGRQLYNAIIKLSNKLDYVSPGSPTYWPADPRKVPDLID
FT                 FAVTKNIPRNIISAKALSDLSSDHSPVLITLLQSPETTDHPQRLTSHRTNW
FT                 LKYKMYVSSHIELTPQLNIEADIERSTDALEDVLVAAATISTPQSKDVQIN
FT                 HFKTNLQLEQLVLEKRRLRRAWQTNRSPSSKQRLKEATRTLNRALKKDAEN
FT                 AQLRYIGKLSPTSTKHPLWRAHPNLSSPIETVTPIRNPSGSWARSDEDRAE
FT                 TFASHLRSVFQPNPATGPFLLPQIESETISLPTLLQPKEIAKVIGDLKPKK
FT                 APGSDLITPKMIIELPNSAIEAICKLFNGIIRLGYYPSKWKKSTIIMIPKP
FT                 GKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPYLEAHNVIPAHQFGFRQR
FT                 HGTIEQVNRITSEIRTAFENREYCSAIFLDVSQAFDRVWLDGLMHKIKTHL
FT                 PTYTHKLLESYLYNRVFAVRCNTTTSDDYIIEAGVPQGSALGPTLFVLYTA
FT                 DIPTNEQLTTSTFADDTAILSRSRSPSRATTQLANHLIVVERWLSDWRIKI
FT                 NEQKCKHITFTLNRQTCPPLSLNSTPIPQVNEVTYLGVHLDRRLTWRRRIE
FT                 CKKLHLKLKASSFHWILNIRSPLRLDYKVLLYNSTLKPIWTYGSQLWGNAS
FT                 SSNIDIIQRAQSKILRTITGAPWYIRNQNIHRDLGILAVKDEIDKQKTTYK
FT                 QKLSVHPNHLARGLSRVSSRTRLQRNDLPTQQ"
FT   CDS           join(13..489,456..740)
FT                 /product="Jockey-9_DRh_1p"
FT                 /translation="RSQKTSTRTHPALLSVDTQRARSLSPSLLTVTPTPTA
FT                 WSSQCKTPPPSESTLGTSATCSGKTSAIAPKVTATTTATAAKPTTSTATAL
FT                 TAESTAMSSTAAPNITSTKIMTKQNQANIQQAGPAIQTGMDRYIQTKRKLS
FT                 PQNTAVACKPKINRVQRDNEAKNKPSPKRQRITGRSNNNRFSYADALRTGT
FT                 ENPLQSYLGNVQQVPGQSQSPLEAMMVTMQQSMMEFMSFMKTTMQTLVQNQ
FT                 NMVLQLLAAKQSK"
XX
SQ   Sequence 3542 BP; 1193 A; 945 C; 652 G; 752 T; 0 other;
     taagcgcgat agcgaagtca aaaaacgtct acaaggaccc acccggctct actgtcagtc        60
     gatactcaaa gagcacgatc gttgtcaccc tctttactca ctgttactcc cactccaacg       120
     gcgtggagtt ctcaatgtaa aaccccccca ccatcagaat cgacccttgg cacatcagca       180
     acatgcagtg gtaaaacttc tgcaatcgca ccaaaagtaa cagcaacaac tacagcaacg       240
     gcagcaaaac caacaacttc tacagcaacg gctcttaccg cggaatcgac tgcgatgtcg       300
     tcgactgcag cgccaaatat aacgtcaact aaaattatga caaaacaaaa tcaagcaaat       360
     attcaacaag cgggcccggc catacagacc ggcatggacc gctacatcca aactaagcgt       420
     aagcttagcc cgcagaacac cgcggtggct tgtaagccaa aaataaaccg agtccaaaga       480
     gacaacgaat aaccgggaga tccaataaca acagattctc atacgccgat gcccttcgaa       540
     caggaacgga aaacccactc cagtcttatc taggaaacgt tcagcaggtc ccaggacagt       600
     cacaaagccc actggaagct atgatggtta ctatgcaaca aagtatgatg gaatttatgt       660
     ccttcatgaa aacgaccatg caaacactgg ttcaaaacca gaacatggtg ttacagttgc       720
     ttgcagcaaa gcagtccaaa taattgatgg caaatctacg aataaccatg tggaacgcca       780
     atggcgtttc ccggcacaaa catgaaataa cacagttcct gaatgaaaat catatcgaca       840
     ttatgctact gatagagacg cacctcacaa acaaatacaa tttccaaata agaggctaca       900
     ccttctaccg cacagatcat ccagatggta aagcccacgg cggaaccggc atcctaatca       960
     gggaacgcat caaacaccac tttcacgaaa ggtttgcaac taattacttg caggccacgt      1020
     ctatcaaagt gcagtcagat agcggacccc tttccatagc cgctgtctac tgcccgcctc      1080
     gctttacaat tactgaagga caattcatgg atttttacaa cttacttgga gatcgcttca      1140
     tagcagcagg agattataat gccaaacata cccactgggg atcacgactc gtgactccca      1200
     aaggaaggca attatataat gcaattataa aactaagcaa caaattggac tatgtttccc      1260
     caggtagccc cacatactgg ccagcagacc ccagaaaggt cccagactta atagattttg      1320
     cggtgacaaa aaacattcca cgcaatataa taagcgccaa agcgctttcg gacctttcat      1380
     ctgaccactc gccagtgcta ataactcttc ttcaaagccc agaaactaca gatcaccccc      1440
     agagactgac atcgcacaga acaaactggt taaaatataa aatgtatgta agttctcaca      1500
     tcgaactaac cccgcagctc aacatcgaag cggacatcga aagatccact gatgctcttg      1560
     aagatgtact cgtggcagca gccactattt caacaccaca atcgaaggac gtgcaaatca      1620
     accatttcaa aactaatctg caattggaac agcttgtact ggaaaagagg cgtctgcgac      1680
     gtgcttggca aaccaataga tcgccatctt caaaacaacg ccttaaggaa gcaactcgca      1740
     cactaaaccg agccctgaag aaagacgctg aaaatgcaca actgcggtac atcggaaaac      1800
     tttcgccaac cagtacaaaa catcctctgt ggagggctca cccaaatctg agctctccaa      1860
     tcgaaacagt cactccgata agaaacccat caggtagctg ggcccgcagc gacgaagata      1920
     gagccgaaac ttttgcttca catctccgaa gcgttttcca gccgaaccct gccactggtc      1980
     catttctcct accacaaatt gaatcggaaa ctatatcctt accaacattg cttcagccaa      2040
     aagagatcgc gaaagtgatc ggggatctga aaccgaaaaa ggctccgggc agtgacctaa      2100
     taacaccaaa aatgataatt gaacttccaa actctgctat tgaggctatt tgtaaactct      2160
     tcaatgggat catacgtctc ggctactatc cgagcaaatg gaaaaaatct actatcataa      2220
     tgataccgaa gcccggaaaa gaccacacaa ttccttcatc ctacagacca ataagtttac      2280
     tatcgtgtct gtctaaattg ttcgaaaaat gccttcttac acgcataata ccatatctgg      2340
     aagcacacaa tgttatcccg gcacatcaat ttggcttccg tcaaagacat ggtacaatcg      2400
     aacaagttaa cagaataaca tcagaaatcc gcactgcctt tgagaatcgg gaatattgca      2460
     gcgcaatatt cctcgatgta tctcaagctt tcgatcgagt ctggctcgat ggcctcatgc      2520
     ataaaatcaa aacacacttg cctacataca ctcataaact acttgagtcg tatctgtaca      2580
     acagagtctt cgcagtaagg tgcaacacaa caacatctga cgactacatt atcgaagctg      2640
     gagtcccgca aggaagcgca cttgggccta ctctgttcgt cctatataca gcggatattc      2700
     ctacaaacga gcagctaaca acatctacgt tcgctgacga cactgcaatc ctaagtcgct      2760
     cgaggagccc aagccgagca acaacacaac tagccaatca cctcatcgta gttgagaggt      2820
     ggctatctga ttggcgtatt aaaataaatg aacaaaaatg taaacacata acgtttactc      2880
     tcaacaggca aacatgccct ccactatcat tgaatagtac tccgattccc caagtcaacg      2940
     aagtaacgta tctcggcgtc cacctagaca gacgactaac ctggagaaga cgcatcgaat      3000
     gcaagaaact acatctaaaa ctaaaagcca gcagcttcca ctggatatta aacattcgat      3060
     cgcccctgcg tctggactac aaggtcctgc tctacaactc tactctcaag cctatctgga      3120
     catatggctc ccagctatgg gggaacgcga gcagcagcaa cattgacatc atacagcgcg      3180
     cacaatcgaa aatcctgagg actatcactg gggcaccgtg gtatattcgc aaccaaaaca      3240
     tccacagaga cctcggcatt cttgcagtaa aagatgaaat tgacaaacaa aagacgacct      3300
     acaaacaaaa actctccgtg cacccaaatc atctcgcaag aggcttgtct cgggtttcca      3360
     gcagaacccg ccttcaacgc aacgaccttc caacccagca ataattctca gggccgcatt      3420
     actcagtacc agtcttatga ctgttagtta gattactata agatttgata cacttattgt      3480
     tagtatccga aaggagaaga ttcaataaat aaatagcaaa gcaatttaaa aaaaaaaaaa      3540
     aa                                                                     3542
//
ID   Jockey-9_DTa repbase;    DNA;    INV; 8769 BP.
XX
AC   .
XX
DT   19-JUL-2021 (Rel. 26.10, Created)
DT   25-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DTa; HETA.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-8769
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5930-5930 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Tandemly arranged, presumedly
CC   associated with telomere.
XX
FH   Key           Location/Qualifiers
FT   CDS           727..3603
FT                 /product="Jockey-9_DTa_1p"
FT                 /translation="MEGDSISSVTHTDYEILSISSSPVLSLSSNFLNYSAL
FT                 SQGPIDSDDDVTLTEIEKGRDPLTSIETVSKHLLIKKYLESAEDMAPLITK
FT                 QFSSKTDLDSRTHTHTISKLAQPNESEEKMSGKSEVLTKLGLTPIPPVTPQ
FT                 KPPFLKSDSAENIASPKNNTHTLKACSQNKTEPTTNPVKSPLSLDAKAKIS
FT                 LEPPAKRTHTTTKDSPENDRLHNLPLSLSLNRQNRQVNEPVKPNTPSSHTN
FT                 NELTTLSDNSHKTHTTSTNSSTLMATHIHTHTNAEKSTTNGSANGCGNGAV
FT                 GNSPQNRLKPSPTKPLSPKAIHEKEKGVDSPQFSTPNNKANHKKQEANSKP
FT                 KPGDPIMIAPTQPHTLQLNNLESGTVVDPLTLTNAILGQIRSLKKADPKTH
FT                 SLHDKHENPLLSKDKRKRSPSPPDHPLTPIAKNHNAFTNNLDKSSTRRSLF
FT                 KTPGKRRMEDTEILLEETPVKKPCNRIGISNEIPAENATKIETSNPDHMET
FT                 DQEKLEQTDPNIQPWKLVPTSKKVPSFYVASIPAIIPLLEKFNYRAGISNY
FT                 KTKTTAGNGIRIQAADMESYNSIKSVLLENGVPAHTHQANEDRGFRIIIRH
FT                 LHPSTPSTWIMKELGNLGFTVSYIQNVKNRITGNGYRMFEVVVNTQRDGGH
FT                 TKILNLDSLGNQSIKVERKNKPREPVQCFNCQGFSHAKGSCLKPPKCMKCA
FT                 GNHATSTCSKPRSSPATCANCLGEHVSCYKGCPIYKKEKNRLTANRINLDM
FT                 YRGQFNKTDHKRDNPNHHQNQENDRLSNARVLKETPPPKTLPDHLLQKDNR
FT                 QSSNPSWVNPFKNRENFRKIYQNRPSSHNASIKRRLGKIRKSDLPPVKTKS
FT                 QRFKIKSHGTHLDWLENNKTKTTRALEKSLANRDVSGSPPTTSKQAQLNLR
FT                 PRIIPESSEQTNTELKKPNRSHVNTELTLEDKITNLELKLDLFINKVMSLL
FT                 NPSN"
XX
SQ   Sequence 8769 BP; 2973 A; 2181 C; 1605 G; 2010 T; 0 other;
     aacatcgaaa aaacaaaatt aaaataatac gtgttaaaat cagtgggcaa cttaaagtac        60
     aaggaacgag ccaggaattc agattaaatc agacgactaa tacggtaggc agcaaagcac       120
     caaacctgca gcctttttaa aatgtatttt aacctaactt aatacaatga aaaagttaaa       180
     taacttaaaa acctgaaact aagcctaata tcacaaatta aagtataaag ttatcaccaa       240
     gcaaataaat cccaaaatcc caaaattaag agaggaaagc aaaaccacca aaccggcagc       300
     cattttaaaa tgcattttaa cctaacttaa tacaataaaa aaagtcaaat aaatcaaaaa       360
     cccaaaacta agcctaatat cacaaattaa ggtataaagc tatcaccaag taaataaatc       420
     ccaaaaacaa aaataagaga ggaaagtaaa accaccaaac ctgcagccat tttaaaatgt       480
     attttaacct aacctaatac aacaaaaaag tttaataatt taaaaacccc aaactaagtc       540
     taatatcaca aattaaagta caaagctgtc accaagtaaa ttaattctaa aaatagaggg       600
     gataataaaa ttaccaaacc tgcagccatt tatatgcaat ctaacctaac ctaacacaat       660
     aaaaagaatt aaaacttata agcaataaaa ctcaacaatc cagagttctc acttataatt       720
     aaattaatgg agggcgattc tatatcctcg gttacacata ctgactacga gattctgtca       780
     atctcgtcaa gccctgtttt aagcttgtct tcaaatttcc ttaactattc ggccctatca       840
     cagggtccaa tagactctga cgacgacgtc accctgacgg agatagaaaa agggagagat       900
     ccccttactt caatagaaac agtcagcaaa cacctcctca ttaaaaaata tttggagtct       960
     gcagaagaca tggcacccct tattaccaaa caattctcct ctaagacaga cttggactcc      1020
     cgtacccaca cacacacaat ctcaaagctc gcccaaccaa acgaaagcga agaaaaaatg      1080
     agcggcaaaa gtgaagttct cacaaaacta gggctcacac ccatacctcc ggtaactccc      1140
     caaaaacctc cgtttttaaa aagcgactca gcggaaaaca ttgcctctcc aaaaaataac      1200
     acacacacac tcaaggcatg ctcccaaaat aaaactgaac ccaccacaaa cccagtaaag      1260
     tcacctctct ctcttgatgc caaagctaaa ataagcttgg aaccacccgc aaaacgcaca      1320
     cacaccacta ccaaagactc tcctgagaat gataggctcc ataatctacc actctcgctc      1380
     tctctaaatc gccaaaatcg tcaggtcaat gaacccgtca agcctaatac ccctagctca      1440
     cacacaaaca atgaactcac cactctctca gataactctc ataaaacgca caccactagc      1500
     acaaactcat caactttaat ggctactcat attcatactc acacaaatgc agaaaaaagc      1560
     accacaaacg gctccgcaaa tggatgcgga aacggcgctg ttggcaactc ccctcaaaac      1620
     cgtttaaaac cctcgcccac aaaacctctc tctcctaaag ctatacacga aaaagaaaaa      1680
     ggggtcgata gccctcaatt ttctacacca aacaataaag ccaaccacaa aaaacaggaa      1740
     gccaactcaa aacctaagcc cggtgatcca attatgattg ctcccacaca accccacact      1800
     ctccagttga acaatttaga aagcggcacc gtagtcgacc ctttaactct taccaatgcc      1860
     attcttggtc aaattcgctc cctaaaaaaa gcggacccca aaacacactc cctacacgat      1920
     aaacacgaaa atccactgct ttccaaggat aaacggaaaa ggtccccctc cccgcccgat      1980
     caccccctta ctcctatagc taaaaatcac aatgcattca caaacaatct tgacaaaagc      2040
     tccacgagga gaagcttatt caaaaccccc ggcaaaagaa gaatggaaga cactgaaata      2100
     ttgttagaag aaactccggt aaaaaaaccc tgcaatagaa taggcatctc caatgaaatc      2160
     ccagctgaaa acgcgaccaa aatagaaacc tctaacccag accatatgga aacagaccaa      2220
     gaaaaacttg agcaaactga cccaaacata cagccatgga aattagtccc aacaagcaaa      2280
     aaagtcccat cgttctatgt agcaagtata ccagccatta tccctttact tgagaaattc      2340
     aactacaggg cgggcatatc caattataaa acaaaaacaa cggcgggtaa tggtatccga      2400
     atccaagcag cggatatgga atcctataac tccatcaaat ctgttctgct agaaaatggt      2460
     gtccccgctc acacacacca agcaaacgag gacaggggtt ttaggataat tatccgtcac      2520
     cttcaccctt ccacaccctc aacttggata atgaaagaac taggcaacct cggatttaca      2580
     gtctcctaca tacagaacgt aaaaaatagg attacgggta atggttacag gatgttcgag      2640
     gtggtggtta atactcagag ggatgggggc cacacgaaaa tattaaatct ggattcactg      2700
     ggcaatcagt caattaaggt cgagaggaaa aataaacccc gcgagccagt ccaatgtttc      2760
     aactgccagg gtttttctca tgccaagggc tcctgtctaa aaccccccaa atgtatgaaa      2820
     tgcgcaggca accatgccac gtcaacctgc agcaagccaa gatctagccc agcaacttgc      2880
     gcaaattgcc taggagaaca cgttagttgt tacaaaggct gcccaattta caaaaaggaa      2940
     aaaaataggc tcacggcaaa cagaatcaac ctggacatgt atagaggaca gtttaataaa      3000
     acagaccaca aaagagacaa cccaaaccac catcaaaacc aagagaatga caggctctcc      3060
     aatgcaagag tattaaagga aactcctccg ccaaagactc tcccagacca ccttctgcaa      3120
     aaggacaacc gacaatcgtc aaatcctagc tgggtgaacc ctttcaaaaa cagggaaaat      3180
     ttcaggaaga tttaccaaaa ccgtccctca tcccataatg cgtcaataaa gaggaggtta      3240
     gggaaaataa ggaagagtga tctacccccc gttaaaacca aatcccaacg ttttaagata      3300
     aaatctcatg gaacacactt agactggttg gagaacaata aaaccaaaac aaccagagct      3360
     cttgagaaaa gcttggcgaa tagagatgta agtggtagcc cacccaccac aagcaaacaa      3420
     gctcagctta acctcagacc aagaataatc ccggaaagtt cggaacagac aaacactgag      3480
     cttaaaaaac caaatagatc ccatgtaaac acagaactca ctttggaaga taaaatcaca      3540
     aaccttgagc taaaactaga tctctttatt aataaagtaa tgtccctact aaacccctca      3600
     aattaactta aaacctatcc aatatgacaa aaggcagaaa taccaaacaa ttatcactca      3660
     gctaaattaa ttaaataaaa taaaccgcac atccataaac aaaaacaaca ccacgcgaac      3720
     ttttgagaat caagaactat gagtggggag ttgaggcttt acgaacaggg tataaacaaa      3780
     cggaaatttt ctgcatttaa atcactcaag aaaccccaat ataaggtctg taccccttaa      3840
     aaaccacact cacctgacct agggcactca tatccaattc gatgatcgta gctggaggat      3900
     atttgtaata atgttgaaga ctttccggac gcaagtcagc actgcatgca gcttctaatt      3960
     tagcacggag gcgccagcaa aaatcccaag ggacagtccc cattcagtat gaatgcatca      4020
     gaatccatgt ttttttttca cctagctgct gaaaaggaaa aataattaga aaatcttgca      4080
     aaagttacaa ttaaaggaaa agggctgatt cgtattatac tggtcctggt gaaggaccct      4140
     gcagtctacc acaaaaatac tactctacca aaaggaatcc ctacgtttct gtttatgctt      4200
     accttcgcca tagctgttgg cagacacact gcttgctttg ccccaggaaa aattgaggtt      4260
     atccagttcc tgatcctggc gtcaaaaggc tagacggatg tcctgcggac ggcggacgac      4320
     ggtatccact ccatgtgctc tgcatcctgg acatgttacg ctctcttctg gacactgagg      4380
     caacagctga aagctcaaag gttgcaccca aggatccttt tatccgactg acccaggaga      4440
     cacggacatc gcctggccga cagacaaagg tcaatccgta ctcggatcaa gattacatac      4500
     tacgcagttt ccaattcaga ggaggctgag tgtagatttc ggcactagct aaaatcaagc      4560
     gactgcgcac agttccaaat accaagctga aattaaagca aaaactaatt agtaaaaatc      4620
     aaacacacaa actacaaatt gcaacagaga atgcgtagga cccgttacca aactaaacat      4680
     taacaaacta aatacataaa tcaaatacat aagtcaagct tacgcttacc ttcgacatgt      4740
     gtcactccac aaagacatgt tgcactcttc atccggaaat tgtgacggaa acggcagctc      4800
     taacagtgag ccccgaccag gtcctgccag ttcccaaagg aaggactatt ggaatccatc      4860
     tgactggctt gggagacata gactctctcc ggtagacatt ccgcagtcgt tttcagctat      4920
     actacacttt atttaaatgc aatagcgacg gtgcgaaacc tgacatttag ctgaaattat      4980
     aaacaaaaat aaattagtaa aaaatcaaat acacattata taaaaagcag cagctgctgc      5040
     atgcggatca tgacaccaat ctgaaattat aaacaaaaac aaaaaattta ttagatcaaa      5100
     ctcacaagct taaaatacag caaatgctac gctcggtttt cgacatcaaa ccaaatcata      5160
     atcaaaaaca aattactaaa aataaataca taaacactat gttttacact caccttcgcc      5220
     atggtaatta agacacttag cttccttgct ccgtgaagga cttgaggttc cctcatcttt      5280
     gcgtttgggg actataacgg atgtcctgcg gatgcaaact tcactatgca ctacatacac      5340
     tccgcaacac agggcacact acactgtgtc ccgtggcact gcggcagcaa ccgatggctc      5400
     tggcagaagg atactgccca gacctattag tcctcaaaag atggacccaa ggaatctcag      5460
     cccggttgac atgagaggct caaacttttt ctggcagaca atctgcactc gttatcaaat      5520
     tcatactgca ctatatataa atgcagtagc ggctgtgcgt ggttccgaca ataagctgaa      5580
     attacaaaca aaaataaatt aggaaaaaaa atataaataa ataaataagt aaacaaaact      5640
     aaacaataat caattaatta aaattaaaac acataggttc catgttccac acttacctcc      5700
     gccatggaat tcatagacac aaagttcctg ctgaccctct taggattgac ccagggaatc      5760
     ctcacccggc tagggcaggt gccttcaata cgcccaccat gcagaaaaac caagacttcc      5820
     tggatctgga cctagtgaat tacgatgtgc cggctcacca aatactgtag ctagtcctat      5880
     gatccgggca ggaagcgggg cccaggaccg gatcctctga ccttgaatcg accaggatga      5940
     tcctgatcga tgacgatgaa catgatgctc tttcgtccat ggccctgaca caagatacaa      6000
     tataacttgt gcgcagggcc atggtcggtg acacattcac agattcacat tcacggatta      6060
     caggcacact ttaaaatgtc acaggagagc ggcctcacag ttgctcctcg gctgtttgtt      6120
     ctggatagga ccatactgcg tcgactggta aaaaattttt tagctatggt tacaaacccg      6180
     actgggagag aggactcggt ccgagtctac taaattttga tggctaggaa ggttcccgtc      6240
     tggatgcgtt caaaaaacct gcaaaaggaa ataggaaaat ttgttaatat caagcagcca      6300
     aaaaaactat aaagaaaatc gaattttgat taccaaattt tttggggttg gcagtcctgc      6360
     agcccctcca ctacggacgc cattcctgct gtcataaggc gctctccgcc actgattcat      6420
     ctggtcgtag ctacaaattt tttcaaaaga tccaaaaatg tttagtaaat ctaatttcaa      6480
     acaaacaatt taattcaatt aagtaaaact aacatacaca agtaaacaaa tcaaatcctg      6540
     tagcagatca tcacagaatg gtttacctgt acaagaggga ctgcacctcc tcatccttgt      6600
     ggttctttga gaagtcatac gaggaatggc cgatcctgat gacccttgga tccgctgata      6660
     ctcaagcggc tcctatggcc gccgccgtta aagggcgctc tccttgcatg gattggatac      6720
     gcatgccgct ccaaaccaga ggctggtgct gtttctggct cctggatgcg gcggtcgcac      6780
     actggatccc ttagagagat gtatgctgcc acctcctccg gacacctagg cggagacacg      6840
     cttttctggg accttgccct tttatgctgc caatcataag atgacctttg gggtttttcg      6900
     tcgggctgaa attacaaata aacatgggaa tcagtaaatt tataaatact ataaaaaatt      6960
     ctctggaatt ccttaaaatg cgccgcccat ggaaaaggct tgcattctcc gctgatcatc      7020
     cggactgaat ggacgagtgg aagatcctga ggatccctgc tccttgacat cccgacatcc      7080
     tatgtccgtc gcctttgaga aagcgctccc atcttgatga ctggattcac attcagctcc      7140
     aaaccagaga cttatgcttt ttctggcttc tggatgcggc ggttacacac tggatcccgt      7200
     agagaaatat acgctaccac cttttccgga catttagatg gagacgcgcc tttctggata      7260
     ggtttttgag actttgccct gttatgctgt catttataga tgacccttag gattttcgtc      7320
     tggctgaaaa tacaaataaa catgggaatc agtaaattta taaatactat aaaaattctc      7380
     tgggattcct taaaatgcgc cgcccatgga aaaggccgca gcctccactg atcatctggt      7440
     ctgaatggac gagtggaaga tcctgaggat tcctgctcct tgacatcccg acatcctgtg      7500
     accgtcgcct ttgagagggc gctcccatag ttatgactgg atgcaagttc cgctccaaac      7560
     cagggactta tgctttctct ggcttctgga tgcggcggtt acacactgga tcccgtagag      7620
     aaatgcatgc tgccaccttt ctccggacat ctagatggag acgcgcctcc ttggataggt      7680
     tcctgtgacc gtgccctgtt atgctgccaa ttatagatga cctttgggtt ttctcgtctg      7740
     gctgaaaata aacaaacatg ggaatcagta actttataaa tactataaaa attctttgaa      7800
     attccctaaa tttcgccgcc catggaaaag gctcgcagtc ttcgctaatc atctggactg      7860
     aatggacgag aggaagatcc tgaggatttc tactccttta catcccgaca tcctatgacc      7920
     gccgccttga aaaagcgttc tccttgcggt gattggacac acatgccgct ccaaaccaga      7980
     ggctaatatt gtttctggtt cctggatgcg gcggatgcac actggatccc acagaggaat      8040
     aacgctgcca ctctctccgg acatctggat ggagacgcgc cttcgtggat gttttcctgt      8100
     gacattgccc tgttatgctg ccaactatgg atgacctctg ggatttttcg tctggctaaa      8160
     aatacaaaca aacatgggaa tcagtaacct tgtaaaaatc atggaaattc actgaaatcc      8220
     ataagggtaa gacgcccatg gaaggggccc acagcttcca ccgatcatcc ggactgagtg      8280
     gtgaatggac gagtggaaga tcctgaggat tcctgctcct tacatcatgc ggaggtccca      8340
     cagagataaa gtctcaggcc caacgccgag cgccggcgat ataatgctct tctttcccgt      8400
     ttcagtcact gacacagttg ggcctctgga acactgcagc aattgaacgc caattccatc      8460
     tgagggtgaa tggtttccgc accggacgaa cgcctgctac agccagtaca gaaatttccg      8520
     atggatgact ggtcgattgc aaagcggcac attctttatc cagaaagcaa tgactacact      8580
     tcacacaaaa aagaaggcca ttgaagaatg cctgctggat ccttctgcgc cggctcacca      8640
     gtttttgtgg ctgttgctaa atacccttcc gaccggcttt aaaacgcatg acgatcctga      8700
     ccaataactc ctgctgcttc aataaccgga acctggctga ctcacaccta aactcaaagg      8760
     aaaaataaa                                                              8769
//
ID   Jockey-9_DY repbase;    DNA;    INV; 6316 BP.
XX
AC   .
XX
DT   13-JAN-2012 (Rel. 17.09, Created)
DT   13-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6316
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1930-1930 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% indentical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1199..4225,4385..5389)
FT                 /product="Jockey-9_DY_1p"
FT                 /translation="MLVTETHCQSCHNLYFPGYDIYHANHPSGNCRGGAAL
FT                 LVKSGIKHSPKAPMVSWKMQIASVIVQTNSGNVVIASTYLPPNESWARADF
FT                 DHLISSFGNRFILGGDFNAKHQWWGGIRSCSRGRRLQEAIANSSCQILATG
FT                 EPTFYSYNSQLTPSALDFFIVNGIPDNKLSVDKCYDLSSDHLPLIAVLHHE
FT                 PQLKTRRQQLLPPGSSVEIFKAELESRISLDMYLNSAEEIEEAISSFMSKV
FT                 QIAAAYASPNSPQHPGHHQRGQLPPNAAALLCLKRRVRREYARTGDARVNS
FT                 IYKRLANRLQKVLKSSRQAEIDAHLENASPDASSNYSLWKLTRRFKRQVVP
FT                 KAPLKNPLGGWCLSDTEKAETFAENLQQRFQTLDIADDSMHTKIQASLETP
FT                 YQMSLPVSPVSFGEVSLLIKQLKLKKCPGEDQLDNRTIKNFPFRAVLFIVL
FT                 IFNTILRVGYFPKLWKSALITMIPKPEKQPTEVNSFRPISLLPALGKMLER
FT                 VILKRILNLDSVANDELKVFLGANSLDIMLVTETHCQSCHNLYFPGYDIYH
FT                 ANHPSGNCRGGAALLVKSGIKHSPKAPMVSWKMQIASVIVQTNSGNVVIAS
FT                 TYLPPNESWARADFDHLISSFGNRFILGGDFNAKHQWWGGIRSCSRGRQLQ
FT                 EAIANSSCQILATGEPTFYSYNSXLTPSALDFFIVNGIPDNKXSVDKCYDL
FT                 SSDHLPLIAVLHHEPQLKTRRQQLLPPGSSVEIFKAELESRISLDMYLNSA
FT                 EEIEEAISSFMSKVQIAAAYASPNSPQHPGHHQRGQLPPNAAALLCLKRRV
FT                 RREYARTGDARVNSIYKRLANRLQKVLKSSRQAEIDAHLENASPDASSNYS
FT                 LWKLTRRFKRQVVPKAPLKNPLGGWCLSDTEKAETFAENLQQRFQTLDITD
FT                 DSMHTKIQASLETPYQMSLPVSPVSFGEVSLLIKQLKLKKCPGEDQLDNRT
FT                 IKNFPFRAILFIVLIFNTILRVGYFPKLWKSALITMIPKPEKQPTEVNSFR
FT                 PISAMEEKEYAVAVFMDIQQAFDRVWHKGLQCKLKSLLNPQLHQLVTSFLE
FT                 DRTFCVTINGIKSSNRPICAGVPQGSVLGPTLYSLYTADMPTPRSVRTVDT
FT                 DDVLIATYADDTAVFVRNPSLVIAAEALQEYVCSFEKWAQDWNIGINSSKC
FT                 ANVTFATRPGSCGNITLLGSVLEHKPYYKYLGVILDRKLNFGRHATLVKHT
FT                 MLSKAAKMSWLMSPRNKLSLKNKVAIYKTILSPIWRYGLQVYGIAAKTHIN
FT                 KIRTAQSKILRTMCNAPWYMRTSDIERDLEIEKVGDVIQTLAQKYEDRLNR
FT                 HPNVLARRLLRQXVRRRLKRLHPQDLSFRTMS"
XX
SQ   Sequence 6316 BP; 1949 A; 1462 C; 1314 G; 1586 T; 5 other;
     tcaccgacaa gctaccttac aagctcagga tccagctatc tgtgtaccca aaattaacag        60
     cattgataag ttggaaagag cactcaatgc agttatagtg gaatcagact acgacatccg       120
     tacatttaaa tcgggcatct ctaggatata tacaactgac gcaatgacat tcagaatggt       180
     agtcaaaaca ctctctgaat tgaattgtga gttttggcac caccaattga aggaggacaa       240
     gccatttaga ctggtcctta aaaacattca ctccactgtt cctaaagaat taattgagcg       300
     agctttctct gaaaagggtt tctgtgttct caacacttac tgcccgagga gacctgattg       360
     gcgagaaatt ccgattgaag atggatctga cgagcaagca gtcaatgcta aaactagaca       420
     aaatctattt tatgtcaatc ttaggcaagc accaaatgtg tctgatgcgt taaaaataac       480
     ccatgtggaa gacacagggt tactgtagag cgtgccaacc ggagaaagga tctggtgcaa       540
     tgttttaatt gtcaagactt tgggcacacc cgaaattact gccttaaaaa tccagtctgt       600
     ggcaagtgtt cacaggatca ccaaactaac tccaacttat gcctggcagg tctaccagag       660
     aagtacatat gtgcgaactg tggacaaaat catgcatcca acgacaaagt ctgtcaggtg       720
     agaatcgagc taatcaaaaa actaaaacca gctgttaggt tacctaagga cggactaagg       780
     caggctggaa ggcccagcac cgacaacttc acaaattcag aggcacaaat tatttctgag       840
     tcagtagtta aaaatggctt ttcttacgct gacatggctc gtcaaaatac gagattgaag       900
     aacaacggct tggagaaacc aaccgtttct cccccaactt acataccgga cgaacacgga       960
     attgatcata aatttaagac gctggaaaaa gccttacagg atgttaattc ccgaatggat      1020
     caagcttttt aggcttgttc aggagtcgat ggatgccaac aaagcattcc gtgaactggt      1080
     acaaaaacta atttcctaat gactgcgaca aatataaaaa tcggattatg gaacgcacgg      1140
     ggactcctca gaaacaacga ggagcaaagt cttccttggt gccaactcac tggatataat      1200
     gctggttaca gagacccact gccagtcttg tcataatttg tactttccag gatatgacat      1260
     ttaccatgca aatcatccta gcggtaactg cagaggtgga gcagcactgc tagtaaaatc      1320
     tggtatcaaa catagtccaa aggcccccat ggtatcgtgg aagatgcaaa tagcgagtgt      1380
     aattgtacaa actaacagcg gtaatgtagt aatcgcctcc acctatctcc cccccaatga      1440
     atcctgggcc agggctgact tcgaccatct gattagttcg ttcggcaaca gatttatact      1500
     aggaggcgac ttcaatgcca aacaccaatg gtggggtggt atcagatcgt gctcacgtgg      1560
     caggcgactt caggaagcta ttgccaacag ttcatgccag atcctagcca caggcgaacc      1620
     aaccttctac tcatacaatt cccagctcac tccgtctgcg ctggatttct tcatcgtcaa      1680
     tggtattcca gacaacaagc tctctgtaga caagtgctac gacctgtcct ctgaccattt      1740
     gcctttaatt gctgtccttc atcatgaacc acaactaaaa acacgcagac aacaattact      1800
     tccacctggc tcctctgttg agatttttaa agctgaattg gaaagcagga tcagtttaga      1860
     catgtaccta aatagcgctg aggaaatcga agaagcaatt tcaagtttta tgagcaaagt      1920
     acaaatagct gctgcctacg ccagcccaaa ttccccccaa caccctggtc atcatcaaag      1980
     agggcaattg cctccaaatg ctgctgcact cttgtgtctc aaaagaagag tacgaagaga      2040
     atacgctaga actggagatg cgcgggttaa ttcaatatat aaaaggttag caaaccgtct      2100
     ccaaaaagtt ctcaagagct ccagacaggc tgaaattgac gcacacttgg aaaatgctag      2160
     tccggatgct tcatccaact actctctctg gaaactaacc agacgattca aaaggcaagt      2220
     ggtgccaaaa gccccattaa aaaacccact aggcggctgg tgcttatctg atacagaaaa      2280
     ggctgaaaca tttgcagaaa atttgcagca aagattccag acactcgaca ttgcggacga      2340
     ttctatgcat actaaaatcc aagcctccct agaaactccg taccaaatgt ccttgcctgt      2400
     aagcccagtg tcattcggcg aggtttcatt gttaatcaag cagctcaagc tgaaaaaatg      2460
     tcctggcgag gatcagctgg acaacagaac cattaaaaac tttccattca gagcggttct      2520
     gttcatagtc ctcattttca acacgattct gagagtgggg tactttccca agctgtggaa      2580
     atcggctctt attacaatga ttcccaaacc agagaagcag cccactgaag tcaactcgtt      2640
     caggccgatc agcttacttc cggcattagg aaaaatgctc gaaagagtta tcttaaagcg      2700
     gattctcaat ctggacagcg tggccaacga tgagctaaaa gtcttccttg gtgccaactc      2760
     actggatata atgctggtta cagagaccca ctgccagtct tgtcataatt tgtactttcc      2820
     aggatatgac atttaccatg caaatcatcc tagcggtaac tgcagaggtg gagcagcact      2880
     gctagtaaaa tctggtatca aacatagtcc aaaggccccc atggtatcgt ggaagatgca      2940
     aatagcgagt gtaattgtac aaactaacag cggtaatgta gtaatcgcct ccacctatct      3000
     cccccccaat gaatcctggg ccagggctga cttcgaccat ctgattagtt cgttcggcaa      3060
     cagatttata ctaggaggcg acttcaatgc caaacaccaa tggtggggtg gtatcagatc      3120
     gtgctcacgt ggcaggcaac ttcaggaagc tattgccaac agttcatgcc agatcctagc      3180
     cacaggcgaa ccaaccttct actcatacaa ttccnagctc actccgtctg cgctggattt      3240
     cttcatcgtc aatggtattc cagacaacaa gcnctctgta gacaagtgct acgacctgtc      3300
     ctctgaccat ttgcctttaa ttgctgtcct tcatcatgaa ccacaactaa aaacacgcag      3360
     acaacaatta cttccacctg gctcctctgt tgagattttt aaagctgaat tggaaagcag      3420
     gatcagttta gacatgtacc taaatagcgc tgaggaaatc gaagaagcaa tttcaagttt      3480
     tatgagcaaa gtacaaatag ctgctgccta cgccagccca aattcccccc aacaccctgg      3540
     tcatcatcaa agagggcaat tgcctccaaa tgctgctgca ctcttgtgtc tcaaaagaag      3600
     agtacgaaga gaatacgcta gaactggaga tgcgcgggtt aattcaatat ataaaaggtt      3660
     agcaaaccgt ctccaaaaag ttctcaagag ctccagacag gctgaaattg acgcacactt      3720
     ggaaaatgct agtccggatg cttcatccaa ctactctctc tggaaactaa ccagacgatt      3780
     caaaaggcaa gtggtgccaa aagccccatt aaaaaaccca ctaggcggct ggtgcttatc      3840
     tgatacagaa aaggctgaaa catttgcaga aaatttgcag caaagattcc agacactcga      3900
     cattacggac gattctatgc atactaaaat ccaagcctcc ctagaaactc cgtaccaaat      3960
     gtccttgcct gtaagcccag tgtcattcgg tgaggtttca ttgttaatca agcagctcaa      4020
     gctgaaaaaa tgtcctggcg aggatcagct ggacaacaga accattaaaa actttccatt      4080
     cagagcgatt ctgttcatag tcctcatttt caacacgatt ctgagagtgg ggtactttcc      4140
     caagctgtgg aaatcggctc ttattacaat gattcccaaa ccagagaagc agcccactga      4200
     agtcaactcg ttcaggccga tcagctaact tccggcatta ggaaaaatgc tcgaaagagt      4260
     tatcttaaag cggattctca atctggacag cgtggcaatg tcgattccta agtggcagtt      4320
     tggatttcga aaaagccacg gtactccaga acaactacat cgtgttgtta atttcgcact      4380
     gtaggctatg gaagaaaagg aatacgctgt ggcggttttc atggatatcc agcaagcctt      4440
     cgacagggtg tggcacaaag gtctacaatg taagcttaag tccttgctta atccgcaact      4500
     acatcaacta gtaaccagct ttctagagga taggacgttc tgtgtaacca taaacggaat      4560
     caaatcttcg aataggccaa tttgcgcagg agttcctcaa ggcagcgttc tcggccctac      4620
     attgtactct ctgtacactg ctgatatgcc aactccaaga tcggtccgaa ctgtggacac      4680
     agatgacgtg cttattgcaa catacgctga tgataccgca gtttttgtca gaaacccttc      4740
     cttggtcatt gccgcagaag ccttacagga gtacgtttgt tccttcgaaa aatgggcgca      4800
     ggattggaac ataggaataa acagtagcaa atgcgcaaat gttacgtttg cgacaagacc      4860
     tggaagctgc ggtaacataa cgcttcttgg gtccgtgctg gagcataagc cctattataa      4920
     ataccttggg gtcatcctgg acaggaaact taactttgga cgtcatgcta cattggtaaa      4980
     gcatactatg ttgtcaaaag ctgcaaaaat gtcttggctc atgtctccaa ggaacaagct      5040
     ctccctaaaa aacaaggtgg ccatttataa aacaatcctc agcccgattt ggagatatgg      5100
     tctacaagtt tatggaattg cagccaaaac acatataaat aaaatccgta cagctcagag      5160
     taaaatactg agaacaatgt gcaatgctcc ctggtacatg cgtactagtg acatagaacg      5220
     agatctggaa atagagaagg ttggtgacgt tattcaaacg ctagctcaga agtatgaaga      5280
     caggctgaac cggcatccaa atgttctcgc tagacgattg ttacggcaaa ntgtaaggcg      5340
     acgattaaag agactccacc cacaggatct atcttttaga accatgtcgt aataaatatt      5400
     ccttgtatta gttgtcaatn agtatttaaa aagataaaac atcgaatata atcaaaaatt      5460
     gttaacttta tgtctaatac aatagtatta ctatgtccta ttacttagcg gtacaataat      5520
     ttaaatttta catgtatcca aactttttaa taaaaaaaaa aaaaaaaaaa aaagctcagg      5580
     aactgcctcg ttcacgaagt acagctgctt gtaagtgcat tcttaagctc aatcaaactg      5640
     gatgctgggc gaatatgcat tgaattaagt gggcgaaatt cgtattggct cttgggctag      5700
     aaaggcacca gagtcttatg attaaaatgc cccgagcccg gaatccccta tgcccatagg      5760
     tgcattccgc tgcagaattt aaatgtccct tcacccgagt gcttgcgtgt gtgcgttcga      5820
     cgttcaagtg aaacttaaga caaaagccag agcgctcgga attctttttt ctgtgtccgc      5880
     ccttccgggc cgtattgttt ttgctggcta aagccgtgca gacatttgga cccaactact      5940
     tgaagttgta tgccccgttt ccttacttat tttttccttt tttctttcct tatgggagga      6000
     ctttatggcg tatacgtgtg ggttcctttg ggcgcacatt gaaatcccag catagttatg      6060
     actttgaaaa aaactgaggg cgaagcacat tttcttctta gccctcaacg taatggcagg      6120
     tgccaggaaa ataagaggct ggaaaaagcg aacgtgaata aaactgtttt cggtctgcgt      6180
     gttcaaaagc gcacttgatt gctcaaatcc tttgtgnatc cccttttaag ccttttgttt      6240
     tccaccaaga caccaaccaa cgccaaagcc acagcaacaa aaacactacc ccgggagcaa      6300
     ctaaaagggg aaaaaa                                                      6316
//
ID   Jockey-9_LMi repbase;    DNA;    INV; 3817 BP.
XX
AC   .
XX
DT   07-JUL-2014 (Rel. 19.11, Created)
DT   07-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3817
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3154-3154 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(606..1541,1490..2236,2259..2837,2650..3642)
FT                 /product="Jockey-9_LMi_1p"
FT                 /translation="MPPLRQMQRLTRDQNQQMRNPRNHTARRQRNGGENST
FT                 TQPLTRSERTQEQRDRTHQAREEDVATAALSSSSTVPATPRENAPRFEDMV
FT                 TLLQKLRDLIKEIPRQITAAVTAAIQAISTGPVMARSQQGLTIAAWNANGI
FT                 RTQEGEFRQFLREEAVDVCLVNETFLKPGVHVRAANYVCYRTDRTTHGGGT
FT                 AVYVRASLAHHRVQLPPLQAIQESHSGSGRHIHRQDHIRRSLQTTKDCGTT
FT                 CRRRNFTVTPGKVFAAGDFNAKHHIWNSRVINNHGWHILREAQHNDAMAIG
FT                 PNDPTHFPENGGQPDVIMLRSDPFPREWGTAGCYYVALIKGVPYVISASTR
FT                 NVLSSDHVPVVLDVDVDAGPAKRRGLPTNSTNWDRYREHLGNSLQDAPMVE
FT                 DAGVEDNVRTFTKNAIQAVKRATPRLQRDPPDRSRQLPPDILAMITAKNRM
FT                 FREWQLTRNPATKRAVNRMQREIKAAVKAHRHQEWSNKLATLRVDDGTGWK
FT                 ATQMFLRRRLKIPPLQVGPTIVSAPEDKANAIADVFEANFTPVQDPIDPEH
FT                 VRLVQERLPTFLNAQKSVQKRCPGFYAASINEKLEAPTSSLTKCFDRCRQK
FT                 PQRTLQQRHCIMRTGHXPQAWKHAEVVPVPKPGKDHRLPSNYRPISLLPAX
FT                 SKVFERVYLKRLMDHIRRENILPDEQCGFRPGHATTHQLLRLVEEALDXTE
FT                 RREYFGAVFLDVSRAFXSVWHDGLLFKLLDXRPAPAARPINSVVSPRQDVP
FT                 GAHWKRPSXRPNVGNTSGQYSLTFRERSXPSGMTVYSSSCWTSGLPLPHVR
FT                 LIRSYLQDRTFQVRTEELSTRRPIRAGVPQGSVLGPILYILYTADMPRIDR
FT                 VHLALYADDTALFSRSMNARTLGTRLQRASDELSRWATKWRLSFNGAKTQA
FT                 LIIARKRVPVDLPRLSVRGTAVPWGRTAKYLGVTLDRRLTWQQHVDDVIGR
FT                 ARGRLRDLYPFLNPTSTLPPQLGVAIYTTLIRPIFEYAAVVWGNAAQTHIK
FT                 RLQGLQNRILRLALHLPRDFPTEDLLRVTEIPPIQARFRQAAKLFYQKAAR
FT                 SPNALIRALGHRVQRLNATRWPHLLRSD"
XX
SQ   Sequence 3817 BP; 969 A; 1147 C; 985 G; 710 T; 6 other;
     caaaacggcg gacgactata gggccatcac agcgaagttt ggggcgcttg ataagccctt        60
     ctatacattt ccttctgccg ccgacaaaac attgaagatt gttttccgtg gcctgcccag       120
     taattacagt ctggaacaca taaaacaaca attgtcggac atggggtatg gttttcgact       180
     ccgctccgtg actcgggtga attctggacg aacgaggaaa gagacaccac tggtcttggt       240
     tgtcacctgt gacatacctc ataacagggg tctctggcaa gttaccagga tcgctgcgac       300
     gcctgtcacc acggaaaaac tcagatcaaa gcggggtgaa ccacagtgct acaactgcca       360
     agctgtggga cacgtcgccc gattttgcta attacctccg cgctgtgtga agtgcgcggg       420
     agaacacgcc agccgagatt gcacacggaa gaaagaagac ggcccaccca agtgcgttgg       480
     ttgtggtggg gaccacgtcg cctcctaccg tggatgttct gtattcctcc gggctgctgt       540
     aaagagccgc ggacaacgtc ctggggccac taggaaacca gcgacagtac gcccaggagt       600
     aagttatgcc gccgctgcgg caaatgcaac gactgacaag agaccagaac cagcaaatga       660
     gaaatccaag gaaccataca gcacgtcgac agcggaatgg gggcgaaaac agcacaaccc       720
     agcctcttac cagaagtgaa cgtacacagg agcaacgcga ccgcacacac caggcacgag       780
     aggaagacgt cgcgaccgcc gctctgagca gttcatccac tgttcccgca actccacggg       840
     agaatgcccc tcgcttcgag gatatggtca cactcctcca gaagctgcgg gacctcatca       900
     aagaaatccc gcggcaaatc acagccgccg tcactgcagc catccaggca atctccactg       960
     gacccgtcat ggcccgtagt caacaaggac tcactattgc tgcgtggaat gccaatggca      1020
     tccgcaccca ggaaggtgaa ttcaggcaat tccttaggga ggaagcggtc gatgtatgcc      1080
     ttgtcaacga gaccttcctc aagccagggg tccacgtccg cgctgcaaat tacgtatgct      1140
     accggacaga ccgaacaaca catgggggcg gaacggccgt ctacgtccgc gcatccttgg      1200
     cccaccatcg tgtccagcta cctcctttac aagccatcca ggaaagccac agcggtagcg      1260
     gtcgacacat ccatcggcag gatcacattc gtcgcagtct acagacaacc aaagactgtg      1320
     gtacaacctg cagacgtcga aactttactg tcacccccgg caaggtcttt gcagcgggag      1380
     actttaatgc caaacaccat atatggaatt cccgtgtcat taacaatcat ggatggcaca      1440
     tactgcggga agctcaacac aatgacgcta tggcaattgg ccctaatgat ccgacccatt      1500
     tccccgagaa tgggggacag ccggatgtta ttatgttgcg ttgatcaaag gggtaccgta      1560
     cgtcatctcc gccagcacgc gcaacgtact ttcctccgat catgtgccgg tcgtactcga      1620
     tgttgacgtg gatgcagggc ctgcgaagag gagagggcta cccaccaaca gcacgaactg      1680
     ggaccgctac cgtgaacacc tagggaacag cctccaagac gcaccgatgg tagaagacgc      1740
     cggagtcgaa gataacgtcc gcaccttcac taagaatgct atccaagcag tgaaacgggc      1800
     cacaccacgt ctgcagagag atccaccaga tcgatctcga cagcttccac cagatatact      1860
     ggcgatgata acagccaaaa accgcatgtt cagggaatgg caacttaccc gcaaccctgc      1920
     tacgaagagg gcagtaaacc gaatgcagcg ggaaatcaaa gctgcagtta aggcacaccg      1980
     ccatcaggaa tggtcgaaca agcttgccac acttcgcgtc gacgatggca ctggttggaa      2040
     ggccacccag atgttcctcc gtcgacgtct gaagatacca ccgctgcaag ttggccctac      2100
     gattgtcagc gcccccgaag ataaggccaa cgcgatcgcc gatgtctttg aggctaattt      2160
     cacaccagtt caggatccta tcgaccccga acatgttcga ttggtccagg aacggctgcc      2220
     gacgttcctt aacgcctaag cggagggaga acctatagca gaagtcagtc cagaagaggt      2280
     gtccaggatt ttacgccgcc tcgataaacg aaaagctgga ggccccgacc agctcactaa      2340
     cgaaatgctt cgacagatgc cgccagaagc ctcaacgcac attgcagcaa cgtcactgca      2400
     tcatgcgaac gggacattas ccacaggcct ggaaacatgc tgaagtagtg ccagttccta      2460
     aaccagggaa ggaccatcgc ctacctagca actatcggcc catcagcctt ttaccagctm      2520
     tcagcaaagt gtttgagcgc gtatatctga agcgtctcat ggaccacatc cggcgagaaa      2580
     acatccttcc cgacgaacaa tgcggcttcc gacctggaca tgccaccacc caccagctgc      2640
     tccgcttagt ggaagaggcc ctcgatkmga ccgaacgtcg ggaatacttc ggggcagtat      2700
     tccttgacgt ttcgcgagcg ttcgmctccg tctggcatga cggtctactc ttcaagttgc      2760
     tggacstccg gcctgcccct gccgcacgtc cgattaattc ggtcgtatct ccaagacagg      2820
     acgttccagg tgcgcactga ggaactttcg acgagacgac ccattcgtgc tggagtcccc      2880
     caaggctctg tcttggggcc gattctgtat atactgtaca ctgcggacat gccacggatc      2940
     gacagggtgc acctcgccct ctacgcggat gatacggcgc tcttctcccg cagcatgaac      3000
     gcccgcacac taggaactcg gctgcaacga gcatcggacg agctgagtcg atgggccacc      3060
     aaatggaggc tcagctttaa tggggcgaag acgcaggcgc tcataatcgc caggaaacgt      3120
     gttccagtcg acctaccacg actctcggta cggggcacag ctgttccatg gggcaggacg      3180
     gctaagtacc tgggagtaac gcttgatagg cggcttacct ggcaacaaca cgtggacgac      3240
     gtcatcggca gagctcgggg ccggctgagg gacctctacc cgtttctcaa cccgacctcc      3300
     actctgccgc ctcagcttgg tgtggccatc tacaccacac tcatccgccc catcttcgag      3360
     tatgcggcgg tcgtctgggg gaatgctgcg cagacgcata tcaaaaggct ccagggtctc      3420
     caaaacagga ttctgcgtct cgcactccat ctaccacgcg attttccgac cgaagatctc      3480
     ctccgagtaa cggaaattcc accgatccaa gccagattcc ggcaggctgc gaagctcttc      3540
     tatcagaaag ctgctcggtc gccgaacgcc ctcatccgcg cacttggcca cagagtgcag      3600
     agattgaatg ccaccaggtg gccccacctg ctccgctccg attaggagcc gtacgcacaa      3660
     ctaggatcac caagacgacg caaaccgcaa ggacaatcaa caagccagga cacagaatac      3720
     cagcacccag ttattttgga ggcgtagctc accagcttgg actccaccga ccatcggaaa      3780
     ctcatatgtt tccgtcattg cacgagcgag cgagcga                               3817
//
ID   Jockey-N1_CQ repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1589
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 584-584 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. ~11 bp TSDs. This family encodes a protein similar to
CC   Jockey ORF1p but does not encode ORF2p. Thus it is a
CC   non-autonomous non-LTR retrotransposon derived from Jockey,
CC   like
CC   HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           75..1295
FT                 /product="Jockey-N1_CQ_1p"
FT                 /translation="MPHGKKKRRSSPAGSADLKKLKNAEALPAKPGSLSKD
FT                 AQNSSGNQFATLPVDVSEKEEFERREKLPPIFVKTSSSDSVRKWLTGFIKS
FT                 GALRASIRLCADGLKILLPTRKDYNYVRDFLNNTKIEYYSHDDPGKRPMKQ
FT                 VLRGLYDMDVSVLKEELKTLKLNVIEVFKMTRHNKDIKYRDQLYLVHLEKG
FT                 STTPSELKAVRAIFNIIVTWERYRPVHRDVTQCSNCLQFGHGGRNCFIKSR
FT                 CATCGGEHKTQACETINENIEAKCFNCGGDHSTKNRSCPKRAEFVKIRQQA
FT                 TTRHQPNRRKTPPTFTDVDFPALASPGAGSVRVVPNLQPLPLNQRQKVAEN
FT                 TTPPGFSQQPRENQPASTDEGSSDLFSPQELLNIFIEMTTTLRGCKTRAEQ
FT                 VRTLGGFILKYSS"
XX
SQ   Sequence 1589 BP; 522 A; 329 C; 359 G; 378 T; 1 other;
     agtctgcgat cagcagagaa gcgagtcaga cgtgcgtccc tcacaaacca aaaaagtgct        60
     taaaaagtgc aaaaatgcct cacggcaaga aaaagaggcg gtcctcacca gcaggatcgg       120
     cagatttgaa gaagctaaag aatgccgaag cgctacctgc aaagccaggc agtttgagca       180
     aggacgctca aaattcgtct ggaaaccagt tcgctaccct ccctgtggac gtgagcgaga       240
     aggaagaatt tgaacgacgg gaaaagttgc cacccatttt tgtgaaaaca tcgtcatcgg       300
     attcggtgcg aaagtggctg accgggttta tcaaatctgg tgctttacga gcttccattc       360
     gcttgtgtgc tgatggactc aaaattctgc tacctaccag aaaggattac aactacgttc       420
     gggatttcct gaacaacaca aagattgaat actacagcca tgacgatcca ggtaaacgcc       480
     ccatgaaaca ggtcctccga ggcctgtacg acatggatgt gagtgtgctg aaagaagagc       540
     tcaaaactct taagttgaac gtgatcgaag tcttcaagat gacgagacac aacaaggaca       600
     tcaagtatcg tgatcaactg tacctggttc atctcgagaa aggatcgaca acgccgtctg       660
     agctgaaagc agttcgggca attttcaaca tcatcgtgac ttgggaacgt tatcgtccag       720
     tgcaccgtga cgtgacgcag tgttcgaact gtttgcagtt tggacatggt ggaaggaact       780
     gtttcatcaa gagtcgttgt gcaacctgcg gaggtgagca caaaactcaa gcttgcgaaa       840
     caatcaacga gaacatcgaa gcgaaatgct tcaattgcgg cggcgaccat tcgaccaaga       900
     atcgaagctg cccaaaacgw gctgagtttg tgaaaattcg gcagcaagcg acgacgaggc       960
     accaaccaaa tcgtcgcaaa acaccaccaa ctttcacgga cgtggatttt cctgctttgg      1020
     cgtcacctgg agcgggatct gttcgagtgg ttccaaatct gcagccattg ccgttgaatc      1080
     agcggcaaaa agttgcagag aatacaacac ctcctggctt cagtcagcaa ccgagggaaa      1140
     accaaccagc atcaacggat gaaggcagta gtgacctgtt ttcaccacaa gaacttctga      1200
     acattttcat cgagatgaca acaacactgc gtggttgcaa aactcgtgcg gaacaagtaa      1260
     gaacgcttgg aggatttatc ttaaaataca gttcgtagtt tactcgttct aatgattttg      1320
     aatatttcaa tgaatttact tttttagttt taagttagga ttagttgtta aagtgatttt      1380
     ttttttcttt tttacccaaa tgtattcgat tcaatgcaaa aatgtaaaac aatttgaagt      1440
     aaataaatga atgtgaacag ttaataagaa aacgaaaaat ataacaaaga tgaagagcat      1500
     gtagccatac cacttagaat gtaaatgaaa tgtaattatt ataagaaagt tcaataaaga      1560
     catatttaat ttcaaaaaaa aaaaaaaaa                                        1589
//
ID   Jockey-N1_DVi repbase;    DNA;    INV; 5750 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Jockey non-LTR retrotransposon: consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey-N1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5750
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1950-1950 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Tandem array, likely telomeric.
XX
FH   Key           Location/Qualifiers
FT   CDS           45..1853
FT                 /product="Jockey-N1_DVi_1p"
FT                 /translation="MMPAEIMQVSENELEASGQQSLPINEDMLGTRICGSP
FT                 KANTVIKRPIKRKFSPTMPANKSDKRALLLAYAEYITNADSVRDTPSYSDF
FT                 FKSNTANKVSDNLSSDNNIPAAKARKSTQXNNGTNVGKTNNATFVANDNNN
FT                 EDSDDIDIMEVEDEATDCNPNVISGQTMQLNLAQRVKVPTIYLPNIDDIQR
FT                 IIKDISNNVGANKFATKSTQTGGVRVQCADIEAYNATIALLDASNVHRHTH
FT                 QMRNERGFRIIIRHLHHTTPCDWVRMELRRLGHEVRYVGVIKQRFTAKPIN
FT                 TFEIELVKNENNTKILELKQLGSQEIKVERQRKRTDPVQCHRCQAYGHSKN
FT                 YCRRPFVCLKCGQGHPTTTCSKTRGEPSKCANCQGQHVANYKGCKAFKDER
FT                 ARLSANRARVMPIQHEHKQPSVNKRQHGTQNVVSNQDREQHQQQKNQKMQS
FT                 NIANSTMTYSQVTSGRVNTGRMHNPAMQHLLKFQKKLQMEQEEERQKNQSG
FT                 AANASNTTGASHHQQQQQQKQHKNKQRQQKESQEPVNNAAIDALNSNMAAI
FT                 MQMTTKLDQVVALLLKIVAKNNINAYPATKLHGTATRTLASLTASSSSDAN
FT                 DTRNE"
FT   CDS           1837..4215
FT                 /product="Jockey-N1_DVi_2p"
FT                 /translation="MILEMSKKSNMLRYGHRVKELTTNSRNIQFINNSEYS
FT                 RFTPNRITAFNIDKISEKFIYSKMAFSRTIDKATIIKCLLSDPEAICLLSK
FT                 CVSHDIQAALESYFNFSTKDAIETTNYLLEYSTEYVSPPLSRSQKGNSNAK
FT                 YYRGHTLLRASIARSKNKHSVPKNSKHVTQMDNLELPSENNSKVVQLPSTQ
FT                 QTSMHSVQHKLLTDKVPQPPTLTHLKQTITNKLTTLDTNTDCYNIQNFIKL
FT                 QNNPTRDQPTPPPTWQQQKHLQLQYICQPMHWAQHQQHKQLSAEHNMSIGL
FT                 QHHPLVQQTAIWGLQNQQQWSTLAKNDQKLQQPDLWGHQLQRQWSMVTQTD
FT                 SMGQQKNQPIQLHQYIGVQPQKNRLTVTKTASTDRQPYPPIQLHAYVPEQL
FT                 QKLWSTVDIPDSLGQQQQLQTQLPHLQPSPMEQQFPQQQPTASTTPLFGHL
FT                 QRPLNPQPVLMGQQAQQRWLIGASNASYGHQQRPPNLQPNVQQQPTAAATP
FT                 TYGLKHEPQNAQSAPEYRQTQQHQSTASSLDSLGTKKQPLIDHPVLKGQQL
FT                 LQQWDIVVKTASLGQTQRLQIEQNAQPGMHLHNTHRTTVVTTANKCHQIQL
FT                 KMAQTAKLERRRRCRRRMTTQRPSIQPSRRRTCKQCKNLKKCKLQKMPCIH
FT                 LPAQMDQRMRQRPAQHTRKPAKRHPLDAEWPDTAPPVRAKMMQRRLHITPP
FT                 SGKNXRDNTAIRYPCILGVWMVLLIASHPLQQLKLCPSKAMQLPADVAAAI
FT                 TQCKLQIYATISRPGTRWRPIVHRKARGRRPAHRKAVRYKIN"
XX
SQ   Sequence 5750 BP; 1969 A; 1409 C; 1195 G; 1174 T; 3 other;
     ctgctccatc ggctagtcaa ttaattccta ataattatgc gggaatgatg ccagctgaaa        60
     ttatgcaagt ttcagaaaat gaactggagg cgagtgggca acaatcgctg ccaataaatg       120
     aggatatgtt gggtactaga atctgtggat cacccaaagc caatacggtc attaaacgac       180
     ctattaagcg caaattctca ccaactatgc cagcgaataa gagtgacaag cgtgcactac       240
     tattagcata cgctgagtat attacgaacg cagacagtgt cagggatact ccttcgtatt       300
     ctgatttctt taaatcaaat acagccaata aagtatccga caatctgtca agcgacaata       360
     atataccagc agccaaagct agaaagagca cgcagwcaaa taatggcacg aatgttggca       420
     aaactaacaa tgctacattc gttgctaacg acaacaacaa cgaggacagt gatgacattg       480
     acatcatgga agttgaagat gaggcaacag attgcaatcc aaatgtaatc tctggtcaga       540
     caatgcagct gaatctagct caacgggtca aggtgcccac catatacctg cccaatattg       600
     atgatattca aagaattatc aaagatatct caaataatgt gggtgctaat aagtttgcta       660
     ctaaaagtac gcagacaggt ggtgtgagag tgcaatgtgc ggacattgag gcatacaatg       720
     caacaattgc gttgcttgat gcctctaatg ttcaccggca cacccatcaa atgcgcaatg       780
     agcgcggatt tagaatcatt attcgccatt tacaccacac aactccatgc gactgggtac       840
     gcatggaatt gcgaagattg gggcatgagg ttaggtatgt gggcgtgata aaacaacgct       900
     tcactgccaa accgatcaat acgttcgaaa ttgagctagt gaaaaacgag aataacacta       960
     agatactgga attgaaacaa cttggcagcc aggaaatcaa agtggagagg cagcggaagc      1020
     gcactgatcc tgttcagtgc caccgttgcc aggcatacgg gcatagtaaa aactattgcc      1080
     gacgaccatt tgtatgcctt aaatgcggac aaggacaccc gaccacgaca tgctccaaga      1140
     caagaggcga gccttcaaag tgcgccaatt gtcagggcca gcatgtagcc aattataaag      1200
     gctgcaaagc ttttaaagat gagcgagcta ggctatcagc aaaccgggca cgagtcatgc      1260
     ccatccagca cgagcacaag cagccatcag tcaataagcg tcaacatgga acgcaaaacg      1320
     tggtgtccaa ccaggaccgt gaacaacatc agcagcagaa gaaccagaag atgcaaagca      1380
     acattgccaa ctcgacgatg acttatagtc aggtgaccag cgggcgagtc aatacaggtc      1440
     ggatgcataa tccggccatg caacacctcc taaagttcca gaagaaactt cagatggaac      1500
     aagaggaaga gcgccagaaa aatcaatcag gagcggcgaa tgcttcaaac acaacaggcg      1560
     ctagtcatca tcagcagcag cagcagcaaa agcaacataa aaataagcaa cggcaacaaa      1620
     aagaaagcca agagccggtc aataatgcag ccattgatgc tttaaatagc aacatggctg      1680
     ctattatgca aatgaccacg aaattggacc aagtagttgc actacttttg aaaatagtgg      1740
     ccaaaaataa tattaatgca tatcctgcaa ccaaattgca cggaacagcc actaggacgc      1800
     tagctagttt aacggctagt agctcctcag acgccaatga tactcgaaat gagtaaaaaa      1860
     agtaatatgc tgagatacgg ccatagagtg aaggagctta caacaaactc tcgaaacata      1920
     caattcataa acaattcaga atatagcaga tttactccaa atcggataac tgcattcaat      1980
     attgataaaa tcagcgaaaa attcatatac tcaaaaatgg ctttcagccg tactatagat      2040
     aaggcgacta taataaaatg cctattatcg gacccagaag ctatctgttt actaagcaaa      2100
     tgcgtcagtc atgacattca agcagccttg gaaagctatt ttaattttag caccaaggat      2160
     gctatcgaaa ctacaaatta cttactagag tattctactg aatatgtttc tcctccactc      2220
     agccgtagcc aaaaaggcaa ctcaaatgct aaatattaca gagggcacac gctgctacgc      2280
     gcatcaatag cgcgtagtaa aaacaaacac agcgtgccca aaaattccaa gcatgttact      2340
     cagatggata acttagagtt gccatctgaa aataattcaa aagtagtaca attaccttct      2400
     acccaacaga catcaatgca ctctgtgcaa cacaaactgc tgactgacaa agtaccgcag      2460
     ccaccaacac ttactcacct caaacagaca ataacaaaca aactgacaac actggacaca      2520
     aacacggact gttataatat acaaaatttt attaaattgc agaacaatcc cactagagac      2580
     cagcccactc cgccgcctac atggcagcag cagaagcatc tccaactcca atacatatgc      2640
     cagcccatgc actgggctca gcatcagcag cataagcagc tctctgctga gcataatatg      2700
     agcatcgggc tgcaacatca tccactagtc cagcaaactg ccatctgggg gcttcagaac      2760
     cagcaacagt ggtcgacatt ggccaaaaat gaccagaaat tgcagcagcc tgacctttgg      2820
     ggacaccagc tgcagcgaca atggtctatg gtgacccaaa cggactccat gggccaacag      2880
     aagaatcagc caatacagct gcaccaatac ataggcgtgc agccacaaaa aaatcgattg      2940
     acggtcacca agacagcctc tacagaccgt cagccatatc cgccaatcca actgcacgcc      3000
     tacgtaccag agcagctaca gaagctatgg tcgacggtgg acataccgga ttcacttggc      3060
     cagcaacagc agctacaaac acaattgcct cacctgcagc cttctccaat ggagcaacag      3120
     ttcccgcagc agcagccgac ggcatccacc acgcccttat ttgggcacct gcaacgcccg      3180
     ctaaatccgc agcctgtcct tatggggcag caagcacagc agcgatggtt gataggagcc      3240
     tccaatgcct cctatggtca ccagcaacgc ccgccaaatc tgcagccgaa cgtgcaacag      3300
     cagccgacgg cagccgccac gcccacctac gggctcaagc acgagcctca aaatgcacaa      3360
     tctgcacctg agtacaggca gacacaacag catcagtcga cggcgtcttc actggactcc      3420
     cttggcacta aaaagcagcc ccttattgat catccagtcc ttaaggggca gcagcttctc      3480
     cagcaatggg acattgtggt caaaacggcc tcccttggcc agacgcagcg actccaaatt      3540
     gagcagaatg cccagccggg catgcatctg cacaacacgc accgcacgac ggtggtcact      3600
     acggcaaata aatgccacca aatccagctg aaaatggcgc aaactgccaa attggagcgg      3660
     cgacgaagat gcaggcgaag gatgactacc cagaggccat ctatccagcc cagcagacgc      3720
     cgtacctgca agcaatgcaa aaatcttaaa aaatgcaaat tgcaaaaaat gccatgtatc      3780
     cacttacctg cacaaatgga ccagcgaatg cgtcagcggc ctgctcagca cacacggaag      3840
     ccggcgaaac gtcatccact cgacgccgag tggccagaca cagcgccacc cgtacgtgca      3900
     aaaatgatgc agcgcaggct gcatatcact ccgccctcgg gcaaaaacak gcgcgataac      3960
     acggcgatcc gctatccatg catcctgggt gtgtggatgg tgttgctcat tgccagtcat      4020
     ccgctccagc agctgaagtt atgcccttcc aaagcgatgc aacttccagc agatgtagcg      4080
     gcagccatca cgcaatgcaa attgcaaatt tatgcgacaa taagccggcc aggtaccagg      4140
     tggaggccaa ttgtccaccg caaggccaga ggcaggcggc cagcgcatcg taaggcggtg      4200
     cgatataaaa taaattaatt aattagatta tttagccata aaattgttaa atttaaaatt      4260
     tttgtccact cacatgtact tagcgtgccc aattgatact tatgttattc ttgccattca      4320
     cacgacagca ttgccaactg atcgtgcata aatttccccc agcgaactga cctacgacaa      4380
     taatgttaat cgaacagagt ctgttatgtt atgttatgtt caaatgtagg tcagtcgaga      4440
     ttaaatgtta aatgtatctc ccccgtcatg tcgctctcca ccttgcaaac tggagatcgt      4500
     tgcatagttt taagtgctcc cataaatgtt ctaaaatttc tgtttgcaaa actatatgta      4560
     gaaatgagca acaataaaaa tctctctgtg gcggtcgtgg cgagcggacg tgtttgcgga      4620
     cagcgcccgg tcggccaacc agacgaacaa ctaaaaaaaa aaaaattttt acaagtgcct      4680
     ttatttctgc cagtaaatta aaattaaaat taaataaaat aaaatgcttg tgccaaacaa      4740
     ttwaaagtaa taaagtttaa acaaataaac tgccaatcag catttttaaa tgctaaaaat      4800
     aaattcaaaa aaaaaaaaaa attaaattaa agccacaatg gagagaaaaa aagtgaaaaa      4860
     ctaataaaat aaagtattct aacaaattaa atacggccaa tcagcatttt taaatgctaa      4920
     acaataaaat aaataaataa ataaaattaa atatataaaa cctaacctgt gtgctgtata      4980
     tatacttata tacagctgag cagcaacata ttgttaattc tattaacaaa agaagccatc      5040
     acagacgaga tacctgacga cagcgaggga aaactacgcc aaaaaaaact cataaatata      5100
     tacataatga tatgtatata aggcaaaaag ggcaagtaca tagacaagta aataaggaaa      5160
     aaatgcgcga aaaggcggcg tccaagccgg cggccattgc tgcatccaaa gctacaaaag      5220
     ctatagcccc cccccatacc ccggcacctg ttgctgaaaa tgtcgccatt ggcgcaccaa      5280
     tacagctgca gctgcagcat cagcagcagc agcttacagc tcaacaccag caacggcacc      5340
     agctacccaa gcagcagcaa caacaccagc tgaaacggag aaagccgaag ccgaagcaca      5400
     agagagcgcc aatgctctct acggctcagt cgctgtcggc gcttgcgtcg gcagaagcgc      5460
     caatcgagcg tttgagtgtc ggcagcagag cggcatcgaa cacgagcaaa ttcagcagca      5520
     gcagcagcta tgaacgtagt gagagcgatc atggcaacat gttcgtctcg agctgcgaac      5580
     aaaatgttga gagcgacagt atggggctac agcaacatgt tgttagagcg caagttcata      5640
     gcaacatgct tgctgatagc ccaaccaatt ctgactcaga aattatctgt gtcacacata      5700
     gccaggaaat ggaggaaatt aataaaaata aaaatattaa taaaaataat                 5750
//
ID   Jockey-N2_CQ repbase;    DNA;    INV; 1766 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1766
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 585-585 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. ~9 bp TSDs. This family encodes a protein similar to
CC   Jockey ORF1p but does not encode ORF2p. Thus it is a
CC   non-autonomous non-LTR retrotransposon derived from Jockey,
CC   like
CC   HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..1517
FT                 /product="Jockey-N2_CQ_1p"
FT                 /translation="MPKAGRGRGSSSAASKNPRSSSTGRVQKGKQTNAVSA
FT                 AIAQGSVSADGIDKKYLHPGYVPRSPVRTRSGTSGATTSGTSTSANIPIRN
FT                 EFQMLSDDEENNNTDGSSTTDDDDDDGRARKKVSTPKKNNSPKERRPPPIF
FT                 VLDTLADDVDELLEGLGYCLKIGKSSVQVYTFDEKNFDLVVEKLKRQNFKF
FT                 YTFDPVQKTAVKVVLQGYQDRPISDLKKDLSGAGITPRDIKVLSRKTTVTG
FT                 THTLYLLYFDRGTVKIQDLRRTKALDGFWVNWRFYSKNPSDAAQCHRCQKF
FT                 GHGSRNCNLPPRCVKCGESHLSEACALPCKADLGDKAEQTKARIKCANCGG
FT                 NHTSNYRGCSARKNYLEEQEKRKKKAAASHPPQRSTSETVPAAGHRTVPAD
FT                 NSAFPPGWGRSFASVVAAGSGNTAQQEVTGEDLFTLPEFFALAGEMMTRFR
FT                 TCRNKAEQFLALGELMIKHIYKG"
XX
SQ   Sequence 1766 BP; 474 A; 460 C; 451 G; 381 T; 0 other;
     cacctccgtg tacgcacgag agcaagcagc agtcaagtgc tctgtgctct accgtttttt        60
     cgaaattttt cgccgtagtt gatagtgatt acccgcgagt ttgcttctcc agcatgccaa       120
     aggccggccg tggccgtggc agttcgagtg cggcctcgaa aaacccgcga agttcgtcta       180
     ccggccgtgt gcaaaaaggt aaacaaacaa acgccgtgtc ggccgccatc gcgcagggga       240
     gcgtgagcgc agatggaatc gacaaaaagt atctacatcc cggatacgtt ccgagatcac       300
     cagtgcgaac ccgttccggt acttccggtg ccacgaccag tggcacatca acatccgcca       360
     acatccccat caggaacgag ttccagatgc tgagcgacga cgaagaaaac aacaacaccg       420
     acggtagcag cactaccgac gacgacgacg atgacgggcg tgcacggaag aaagtgtcga       480
     cgccaaaaaa gaacaattct ccaaaggaac gtagaccacc tccaattttt gttttggaca       540
     cgttggcgga cgatgttgac gagttgctgg aaggcctcgg atattgtctg aaaatcggta       600
     agtcgtcagt gcaagtttac acatttgacg aaaagaactt cgacctggtt gtggagaaat       660
     tgaagcgtca aaacttcaag ttttacacat tcgaccccgt gcagaagact gccgttaagg       720
     tcgttttgca ggggtaccaa gaccgcccga tctccgacct caagaaggac ctctcgggtg       780
     ctggaataac gccgcgtgac ataaaagtgc tctcgcggaa gactacagtc acaggtacac       840
     acacactgta cctgttgtac ttcgaccgcg gcaccgtcaa aattcaagac ctgcggcgaa       900
     ctaaggcgtt ggacgggttt tgggtaaact ggcggttcta ctcaaagaac ccgtcggacg       960
     cagcacaatg ccaccgttgc cagaaattcg gccacggctc gcggaactgc aacctcccgc      1020
     cccgctgtgt gaagtgcggt gaatcacacc tctctgaggc gtgtgcactg ccgtgcaaag      1080
     cggacttggg ggacaaggca gagcaaacga aggcgcgcat caagtgcgcc aactgcggag      1140
     gtaaccatac cagcaactac cgtggatgca gcgcacggaa aaactacctc gaggagcagg      1200
     aaaagaggaa gaagaaagca gcagcgtccc accctcctca gcgaagtacg agcgaaaccg      1260
     tgccggcagc tggtcatcgt acggttccag cggacaactc agcgttccct cctggatggg      1320
     ggcgatcgtt cgccagcgtg gtcgctgccg gcagtggcaa tacggcccag caagaagtta      1380
     ccggagaaga tctctttacc ctgccagagt tctttgctct cgcaggggag atgatgacgc      1440
     ggtttcggac ctgccgtaac aaggcggagc aattcctggc ccttggggag ctgatgatca      1500
     agcacatcta taaaggataa aaaactgtga tctagtttta agctttttct atttctatcc      1560
     cctttccctt gcaattttag taagtttttt ttattttttt cttactcttg gtgacacctt      1620
     tatttacaag caataactgt tccaaaatgg attatgatgt aacacacagc tgtaaggaac      1680
     tccaaaactc tgttatgtac ctcaaaagaa cttattgtat cttgattatt caccaataaa      1740
     accgaattga attgaattga attgaa                                           1766
//
ID   Jockey-N3_CQ repbase;    DNA;    INV; 1612 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1612
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 586-586 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. ~10 bp TSDs. This family encodes a protein similar to
CC   Jockey ORF1p but does not encode ORF2p. Thus it is a
CC   non-autonomous non-LTR retrotransposon derived from Jockey,
CC   like
CC   HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           534..1484
FT                 /product="Jockey-N3_CQ_1p"
FT                 /translation="MSTCDVQPEHKLTRYGTKITCFSSDDFDTVQAHLKKN
FT                 KVQFYTHGKRSARPHRVVMRGLPNAEPDYVKELLKTEHQLDVLAVHAIRRK
FT                 QQLPAIDETPFIVLFPKGHTSLKELSSKVKKVGPVVVRWVAYRNKEPHVTQ
FT                 CKNCLQFGHGTSNCHLKPRCSSCGGAHSTEKCKAEETEAKKCVNCSGSHEG
FT                 LDRSCPKRAQFIQSRQQASKPKPPAWKKDKQTPAGAAFTAADFPPLPGAVP
FT                 SVGTEEKHPRPAGRSRENTGAGAGATPKEQQGERKLYSESELWAIYREYRV
FT                 RLRQCKTPEEQIDVIAHLLTHGAGK"
XX
SQ   Sequence 1612 BP; 438 A; 415 C; 487 G; 272 T; 0 other;
     cattccagtt tgacagcttg cccagagcag acgtgtgtcc ttttagcgcg tttttgacgg        60
     tgtttttttt aactttcgcc gacggccatg gcggcggccg cgacggcgga gagtgagtgg       120
     acggagcaca gggctgagga tggaaggccg ttctactgga acgcggcctt gaagaaaagt       180
     gtgtgggaga aaccggacgg gttccaaccc aaaacgcagg cggcgacggg catggaggtg       240
     gaagactccg aaggaggagg agaggacggg ggcgaatttc gtcccgtgat caaggttcgg       300
     cgcaggaagg ctaaggagga gatcaacgtc ggcgatggcg cagcgaagtg gagaaactgc       360
     tcagcaacaa caagttcagc ccgctagcgg agaagagcaa caacaacaac aatgcgaacc       420
     cagcagcaga aaaaaccacc cccgtggtac cagcacccgg caagtcggcc ggggagaaga       480
     agcagccgcc gctggtggtg aaagaaacga gcttcgcccg ccttgcgaag gtgatgtcga       540
     catgtgatgt ccagccggaa cacaaactga cgcggtacgg caccaaaatt acgtgcttct       600
     cgagcgacga cttcgacacg gtgcaagccc acctgaagaa gaacaaggtg cagttctaca       660
     cgcacggaaa gcgcagtgcg agaccgcacc gggtagtaat gcgaggtctc ccgaacgcgg       720
     aaccggatta cgtcaaggag ctgctcaaga cggaacatca gctggacgtc ttggcagtac       780
     acgccatcag gcggaagcag cagcttcccg ccatcgatga gacgcctttc atcgtgctct       840
     tccccaaggg gcacaccagt ctgaaggagt tgagtagcaa ggtaaagaaa gtgggaccag       900
     tcgtcgtccg gtgggtggcc taccggaaca aagaaccgca cgtgacccag tgcaagaact       960
     gcttgcagtt cggtcacgga accagtaact gccatctcaa gcccaggtgc agcagctgtg      1020
     ggggtgccca cagcacggaa aagtgcaaag cagaagaaac ggaagccaag aagtgtgtca      1080
     actgctctgg atctcacgag ggtctggacc gcagctgtcc caaacgtgcg cagttcatcc      1140
     agtcgaggca gcaggcgtcc aagccgaagc cgccagcatg gaagaaggac aaacagactc      1200
     cggcaggagc cgcgttcacc gcggcggatt ttcctccgct acctggagcg gtgccgtccg      1260
     tcgggacgga agaaaaacat cctcgtcccg caggaagaag tcgagaaaat actggcgccg      1320
     gcgccggtgc aaccccgaag gagcaacaag gcgaacggaa gctgtacagc gagtcggagc      1380
     tgtgggccat ttaccgagaa tacagagttc gcttgaggca gtgcaagaca cccgaggaac      1440
     agattgacgt gatcgcacac ttgctgacac atggcgcggg aaaatgatca tctattcagt      1500
     tacggttttt ttatttttct tttattattt tttgtactat tgatcctcgg tcctaacctg      1560
     gtcacagcac ctaaaaggac ctaataaaaa taagttatga aaaaaaaaaa aa              1612
//
ID   Jockey-N4_CQ repbase;    DNA;    INV; 1793 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1793
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 587-587 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >91%
CC   identity.
CC   This family encodes a protein similar to Jockey ORF1p but does
CC   not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..1549
FT                 /product="Jockey-N4_CQ_1p"
FT                 /translation="MPKSGRGRGSSSAASKHSRSSSAGRVQKGGKQTIAKT
FT                 TAIAKTSDSVIDKNLLHPEYRPRGISPRGFSPRSPVRTRGRVAAGSSQVNV
FT                 PKLDGNKSTGGITISNPYEPLSGEEEEDGETTSDDDDDNSNIPESSAKEKN
FT                 KTRSQERRPPPIYCLGHLADDIDELLEGNKYSLKLGKTAVQVITLDKKSFA
FT                 DVIATLKANGIRHYTFNHADDVPVKVVLGGYMDRPISQLEEHLQNAKVRPR
FT                 EIKVLSRKTTETGTHTLYLLYFNRGTVKIQDLRRIKTLDGFWVNWRFYSKH
FT                 PNDAAQCHRCQKYGHGSRHCNLQPRCVKCGGTHLSEVCSLPRKVDLGDDAA
FT                 QTKPRIKCANCEGNHTSNYRGCSARKAYIEDQEKRKKKPAASRPPHRSTST
FT                 TVPAAGQRTVPSNNSASPPGWGRSFASVVAGSGDSAQQEITGEDLFTLPEF
FT                 FTLAGEMLTRFKACRNKAEQFMALGELMIKYIYTR"
XX
SQ   Sequence 1793 BP; 496 A; 481 C; 444 G; 371 T; 1 other;
     aaccctggca acgcttgagc cagcaacaac acggtgttcg acgctcctca agttttttcg        60
     attttaacgt cgcgagttac cagtttatcc gcgaaactgc ctccccgaga tgccgaagtc       120
     cggccggggc cgtggcagct cgagtgcggc ctcgaaacat tcgcgaagtt cctccgccgg       180
     ccgagtgcaa aaaggtggta agcaaaccat cgccaaaacc accgccatcg ctaaaacgag       240
     cgacagtgtc atcgacaaaa acctcctgca cccggaatac cggccacgtg ggatctcccc       300
     acgtggattc tctccacgta gccccgtgag aacacgtggg agagtcgccg ccggttccag       360
     ccaggtgaac gtgccgaaac tcgacggcaa taaatcaacg ggtggaataa ctatcagcaa       420
     cccgtacgag cccctcagcg gggaagagga agaagacggc gaaacgacca gtgacgacga       480
     cgacgacaat agcaacattc ctgagtccag cgcaaaggag aagaacaaaa cgcgatcgca       540
     agaacgaagg ccgccgccta tctattgtct gggccatctc gcagacgata ttgatgagct       600
     cctcgagggc aataaatatt ckttgaagct aggcaaaact gctgtgcaag tgatcacact       660
     cgacaaaaaa agttttgccg atgtgattgc gacgctcaaa gcaaatggca taaggcacta       720
     cacatttaac catgctgatg acgtccccgt gaaagttgtc cttggtgggt atatggatcg       780
     ccccatttcg cagctggagg aacacctcca aaatgcgaaa gtacgaccgc gggagataaa       840
     agtgctctcg cgcaagacaa cagagacagg tacgcacacg ctgtacttgt tgtacttcaa       900
     ccgcggcacc gtcaagatcc aggacctgcg gcggattaaa acgttggacg ggttttgggt       960
     aaactggcgg ttttactcga aacacccaaa cgacgcagcg caatgtcacc gttgccagaa      1020
     gtacggccac ggctcgcgac actgcaacct ccagccacgt tgtgtgaaat gcggtggcac      1080
     acacctttct gaggtgtgtt cactgccacg gaaggtggat ttgggggacg acgcagccca      1140
     aaccaagccg cgcatcaagt gcgccaactg cgaaggtaat cataccagca attaccgtgg      1200
     atgcagcgca cggaaagcat acatcgagga ccaggaaaag aggaagaaga aaccggcagc      1260
     gtcccgccct cctcaccgca gtacgagcac aaccgttcct gcagctgggc agcgtacggt      1320
     cccgtcgaac aattcagcgt ctcctcctgg ctggggacga tcttttgcca gcgtcgttgc      1380
     cggtagcggc gattcggcgc agcaagaaat aactggcgaa gatcttttca ccctgccaga      1440
     gttcttcact ctcgcggggg agatgctgac gcggttcaag gcctgccgta acaaggcgga      1500
     acaattcatg gctctaggcg aattaatgat caagtacatc tatactcgat aaatttgaac      1560
     tgtgatctag ttgtaagctt ttctccccta tcctttttcc ttagtaactc tagtaagttt      1620
     tttgaaactt ttcttacttt ttgttaagcc catagtcaaa acaataattc ctccaacatg      1680
     gactagtgta acacacagct gcaaggaact ccaaaactct gtattgtaca caaattgaac      1740
     ttattgtaac ttgtttattc aaaaataaaa actgaattga attgaattga att             1793
//
ID   Jockey-N5_CQ repbase;    DNA;    INV; 1793 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1793
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 588-588 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..1566
FT                 /product="Jockey-N5_CQ_1p"
FT                 /translation="MPKRGARHGNSSAAPGTSRNPSPGRITKNNPANSQIK
FT                 PSTAATALEGIDKTKLHPHYRSPYQLRVKTAKAGRQASGVPSVTPVPTRNE
FT                 FEPLSGDDEDNEDDCSTSSSDDDDDPARGSKKAETSKTAAKERRPPPIFVV
FT                 DTLADHVDELLEGQTYCLKIGKKNVQVITLLRANYDKVLMVLKTHNVKYFT
FT                 FDPAETVPVKIVLQGYTDRPVEDLAGHLADVNVHPRDIKVLSRTTTVTGTH
FT                 VLYLLYFDRGTVKLQDLRRKKTLDGFWVTWRYFSKNSTDAAQCHRCQKFGH
FT                 GSRNCNLPPRCVKCGEMHFTEKCKLPQKARLSESDAQQHRSRVKCANCDGN
FT                 HTANFRGCAARKAYLEEQAKKKKKLPATRPPPRLSPTVPVAGQGAADRITP
FT                 AIPPGWGGSYASVTAASGTVPEQAAVSGDDLFTLPEFFALAGEMLTRFRAC
FT                 RNKAEQFMALGELMIKYVIQRISCLVQRCSSASTDKIIL"
XX
SQ   Sequence 1793 BP; 478 A; 476 C; 455 G; 383 T; 1 other;
     atcatcgggc tacctacgtt ggagccagcc acaacacaat tttagtgctc cgttaaattt        60
     tcgatttttt cacgccgcgg gtgaagtgtt taatcgcgaa cttgccgccc ggagatgccc       120
     aagcgtggcg ctaggcatgg caactcgagt gcagcaccgg ggacctcgcg gaacccgtct       180
     cctggccgga ttactaaaaa caatccggcc aatagtcaaa tcaagccttc caccgcggcg       240
     acagcgttgg aaggcattga caaaacaaag ctgcatccac actatcgcag cccgtaccag       300
     ctacgtgtga agacagctaa ggcaggccgg caggcctccg gcgtcccctc cgtcaccccc       360
     gtccccacac gcaacgagtt cgagccgctg agtggtgacg atgaggacaa tgaagacgac       420
     tgcagcacca gcagtagcga cgacgacgac gaccctgcac gcgggtcgaa gaaagcagaa       480
     accagcaaaa ctgcggcgaa ggaaagaaga cctccgccga tatttgtcgt cgacacacta       540
     gccgatcatg tggacgagct actggagggt caaacctact gtttgaagat cggtaagaag       600
     aatgtgcaag tgatcacgtt gttaagggcg aattacgata aagtgttgat ggtcctcaaa       660
     acacacaacg tgaaatactt cacattcgat ccggctgaaa cggtgccggt taaaatagtc       720
     ctgcaagggt acacggaccg gccagtggag gacctggctg ggcaccttgc cgacgtwaac       780
     gttcaccccc gggacatcaa ggtgctctca agaacgacta cggtcacggg tactcacgtg       840
     ctgtacctac tctacttcga tcgtggtacc gtcaagctcc aggatctccg acggaaaaaa       900
     acgttggacg gtttctgggt gacttggagg tatttctcaa agaattcgac agacgcagcc       960
     caatgccacc gttgccaaaa attcggccac ggctcaagaa attgcaacct cccgccgcgc      1020
     tgcgttaagt gcggtgaaat gcatttcacg gagaagtgca aacttcccca gaaagcgagg      1080
     ctgagtgaaa gcgacgctca gcagcaccgg tcgcgtgtca agtgcgcgaa ctgcgatggc      1140
     aaccatacag cgaacttccg cggctgtgcc gcgcgtaaag catacctcga ggagcaggct      1200
     aagaagaaaa agaagcttcc agcgacccgg ccgcctccaa gattaagccc aaccgttcct      1260
     gtagctggac aaggcgcggc agatcggatt actccagcga ttcctcccgg ctggggaggt      1320
     tcctacgcaa gcgtgaccgc ggcgagcggt acagttccgg aacaagcagc tgtgtccgga      1380
     gatgacctat tcactctgcc agagtttttc gccctcgcgg gggaaatgtt aactcgtttt      1440
     cgtgcctgcc ggaacaaggc agaacagttc atggctctgg gagagctcat gatcaaatac      1500
     gttatacaac ggataagctg cctcgtgcag cgctgctctt cggcgtcaac agacaaaatc      1560
     attctgtgat ctagctttaa gttttcctct aactatcccc tttctatagc aattttgtag      1620
     gttttttttc ttgaactttt tcctacttgt gattagcctt tagaataacc aattgtgtcg      1680
     aaagacaaat ttatcaacac atagctgaaa ggacctccaa atctctatta ggtttaattg      1740
     caaagaaaat tgtgaattga ttatttactt aataaaaact gaattgaatt gaa             1793
//
ID   Jockey-N6B_CQ repbase;    DNA;    INV; 1421 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N6_CQ; Jockey-N6B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1421
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 589-589 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A. The consensus
CC   is ~76% identical to that of Jockey-N6_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..1315
FT                 /product="Jockey-N6B_CQ_1p"
FT                 /translation="MEVEESSEEEDFRPVRGNRKRKKSSEVTGIGIEGEKV
FT                 EKTLLNNNKFSPLADNKNNNNASPAGGGDAPAVPPPGQSAGKQKQPPLVVK
FT                 NTTDFYKLVAIVESCKLGFKPIYKLTRFGTKVTCFSVKDFDKLQELLKKKK
FT                 VEFYTHDRRSERNHRVVLRGFPDELKPDEVKYLLKRDLKLDALEVHIIKRK
FT                 EKSTVDETPYIVVFPKGYTNLKKLSAMKVVASTIIRWEAYRNKRPNVTQCR
FT                 NCLQLGHGTRNCHLKGRCNNCGGPHKTDECKVQEAEPKRCANCSGAHEATD
FT                 RSCPKRADFIRRRQQASKPKPPARKAEKQSPAVPAFTPAEFPPLPGAVPDG
FT                 KSKDRPRPAGSSQGGPRDGGATEKEAGEVLYSSAELWGIFSEYIGRFKTCK
FT                 TRLDQVTLVSYMISKYGI"
XX
SQ   Sequence 1421 BP; 396 A; 356 C; 401 G; 268 T; 0 other;
     cactcagtcg ccagccagcg acaagttaag acgtgttttg ctcgtgttgt catctcgcgt        60
     gcttggaagt ttttgacaga tggaggtgga ggaatcctcc gaggaggaag attttcgtcc       120
     cgtccgcggg aatcggaagc ggaagaagtc cagcgaggtc actggaatcg gcatcgaagg       180
     agaaaaagtt gagaagaccc tgctcaacaa caacaagttc agcccgctag cggataacaa       240
     aaacaacaac aatgccagcc cagcaggagg aggggacgcc ccggcggttc caccacccgg       300
     ccagtcggca ggtaaacaaa agcaaccacc tttggtggtg aagaacacca cggattttta       360
     caagctcgtg gcgatagtgg aaagttgtaa attaggtttc aaaccgattt acaaactaac       420
     ccgatttgga accaaggtga cctgcttctc tgtcaaagat tttgacaagt tgcaagagct       480
     actcaagaag aagaaagtgg aattctacac ccacgatcgg cggagcgaac gaaatcatcg       540
     ggtggttctt cgtggttttc ctgatgaact gaaaccggac gaggtcaagt accttctgaa       600
     gagggatctc aagctggacg cgctggaggt gcatatcatc aagcggaagg aaaagtccac       660
     cgtggacgaa actccgtaca ttgtggtctt ccccaaggga tacaccaatc tgaagaagct       720
     ctctgcaatg aaagttgtgg caagcactat catccggtgg gaggcctacc ggaacaagcg       780
     gccgaacgtg acccagtgca ggaactgctt gcagctgggt catggaacca ggaactgtca       840
     cctgaaaggc aggtgcaaca actgtggggg tccccacaag acggacgagt gcaaagtcca       900
     agaagccgag ccgaagcggt gtgccaactg ctctggagcc cacgaagcca cggaccgcag       960
     ctgccctaag cgtgcggact tcatccggag gcgccagcag gcgtcgaaac cgaaaccgcc      1020
     ggcaaggaag gcggagaagc agagtccagc agttccggcg tttacgccgg cggagttccc      1080
     tccgctgccg ggcgcagttc cggacggaaa atccaaggat cgccctcgtc ccgcaggaag      1140
     cagccaaggt ggcccccgag acggtggagc cacggagaag gaagccgggg aggtactcta      1200
     cagttcggct gagctgtggg ggattttctc cgagtacatc ggcaggttca agacctgcaa      1260
     gacccgcttg gaccaagtaa ccctcgtcag ttacatgatc tccaagtatg gaatttaagg      1320
     agtttttttt ttgttattat atattgttat actgatcctc ggtcccaacc tggtcacagc      1380
     acctaaaagg acctaataaa aataagttaa gaaaaaaaaa a                          1421
//
ID   Jockey-N6C_CQ repbase;    DNA;    INV; 1398 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N6_CQ; Jockey-N6B_CQ; Jockey-N6C_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1398
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 590-590 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >89%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A. The consensus
CC   is ~82% identical to that of Jockey-N6B_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..1285
FT                 /product="Jockey-N6C_CQ_1p"
FT                 /translation="MEVEESSDGDEFRPVDGTRKRRKTSDDGAVVGNGXEE
FT                 HLLNNNKFSPLAENNNNNNNNGNPAGKGSVPPVPVVPVAKKPPPLVVKNTS
FT                 XAKLRSVMSPCTTKPSYKLTPFGIKLLCSSEERFETARAHLIANKVEFYTH
FT                 EKRSERQLRVVVRGLPPASPEFVKKXLKESXNLDAVEVHAIKRKGEFASSE
FT                 ETPYIVTFPKGYTNLKQLSEIKXLRAFHIRWEAYRNKRPNVTQCRNCLQLG
FT                 HGTRNCHLKGRCNNCGGPHKTDECEVQEAQPKRCANCSGAHEATDRSCPKR
FT                 ADFIRRRQQASKPKPPARKAEKQSPAVPAFTPAEFPPLPGAVPDGKSKDRP
FT                 RPAGSSQGGSRDGGATEEEAGEVLYSSAELWGIFSEYIGRFKTCKTRLDQV
FT                 TLVSYMISKYGI"
XX
SQ   Sequence 1398 BP; 367 A; 377 C; 411 G; 237 T; 6 other;
     cgtctgacag ccggaggcgg cggacgcgtt tttcckctgt tttcgctgcg cggcaaagtg        60
     cttgcggatg gaggtggaag aatcctccga cggggacgag tttcgtcccg tagacggaac       120
     gcggaagcgg aggaagacca gtgacgacgg agccgtcgtc gggaatggcc magaggagca       180
     tctcctcaac aacaacaagt tcagcccgct ggcggagaac aacaacaaca acaataacaa       240
     tggtaaccca gccgggaaag gaagcgtccc accggttcca gtggttccag tggccaagaa       300
     accacctcct ctggtggtaa agaatacgag ctwcgccaag ctgaggagtg taatgtcgcc       360
     gtgcacaacc aagccaagtt acaagctgac tccgtttggg atcaaattgc tgtgttcctc       420
     cgaggagcgt tttgagaccg cgcgggccca cttgattgcg aacaaagtgg agttctacac       480
     ccacgagaaa cgaagcgagc ggcaactccg cgtcgtcgtc agaggacttc caccggcttc       540
     acctgaattc gtcaagaaga amctcaagga atcgcamaac ctggatgctg tggaggtgca       600
     cgccatcaag agaaagggag agttcgcctc gtcggaggaa accccgtaca ttgttacgtt       660
     ccccaagggg tacaccaacc tcaagcagct gagtgaaatc aagckcttga gagcatttca       720
     catccggtgg gaggcctacc ggaacaagcg gccgaacgtg acccagtgca ggaactgctt       780
     gcagctgggt catgggacca ggaactgcca cctcaagggg aggtgcaaca actgtggggg       840
     tccccacaag acggacgagt gcgaagtcca ggaagcccag ccgaagcggt gtgccaactg       900
     ctctggagcc cacgaagcca cggaccgcag ctgccccaag cgtgcggact tcatccggag       960
     gcgccagcag gcgtcgaaac cgaaaccgcc ggcaaggaag gcggagaagc agagtccagc      1020
     agttccggcg ttcacgccgg cggagttccc tccgctgccg ggcgcagttc cggacggaaa      1080
     atcgaaggat cgccctcgac ccgcaggaag cagccaaggt ggctcccgag acggtggagc      1140
     cacggaggag gaagccgggg aggtgctcta cagttcggct gagctgtggg gcattttctc      1200
     cgagtacatc ggcaggttca agacctgcaa gacccgcttg gaccaagtaa ccctcgtcag      1260
     ttacatgatc tccaagtatg gaatttaagg agtttttttt tgttattata tattgtttaa      1320
     ccgatcctcg gtcccaacct ggtcgcagca cctaaaagga cctaataaaa ataagttaag      1380
     aaaaaaaaaa aaaaaaaa                                                    1398
//
ID   Jockey-N6_CQ repbase;    DNA;    INV; 1458 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1458
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 591-591 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           80..1351
FT                 /product="Jockey-N6_CQ_1p"
FT                 /translation="MEVEESSEEEDFXPVRGNRKRKKTSEVTGXVIEXEKV
FT                 EKTLLNSNKFSALAGDKNNNNASAAGGGDAPAVPEPRKSAGKQKQPPLVVT
FT                 NLGFNRFLDLMALCKVKPEYKLTRSGIKVTCFSVEEFNTVRELLLEYKVQF
FT                 YSHDRRSERSHRVVLRGLPEVDVEIIKDRLKEDHNLDVLDVKAIKRKEKST
FT                 AGETPYIVFFPKGHTNLKKLSAIKKMGPVIVRWEAYRNEQPNVTQCRNCLR
FT                 LGHGARNCYLKSRCNNCGRFHKTEHCKVEVTQPKKCANCSGSHEGLDRSCP
FT                 KRAQFIQSRQQASKPKPPAWXKDKQSPVVPSFSAADFPPLPVPVPIPDKLK
FT                 KTEPQSAADAGSSRGNTGPGAGGQPKAIGEEVLYSTEELWKMFXGELWKMF
FT                 YEFTARLRSCKTRSDQERVVGTMSRKFGAD"
XX
SQ   Sequence 1458 BP; 405 A; 354 C; 412 G; 278 T; 9 other;
     cactcagtcg ccagccagcg acaagttaag acgtgttttg ctcgtgttgt catctcgcgt        60
     gcttggaagt ttttgacgga tggaggtgga ggaatcctcc gaggaggaag attttmgkcc       120
     cgtccgcggg aatmggaagc ggaagaagac cagcgaggtc actggamtcg tcatcgaags       180
     agaaaaagtt gagaagaccc tgctcaacag caacaaattc agcgcgctag cgggcgacaa       240
     aaacaacaac aatgccagtg cagcaggagg aggagacgcc ccggcggttc cagaacccag       300
     aaaatctgcc ggtaaacaaa agcaaccacc tctggtggta acgaacttgg gctttaacag       360
     atttctggat ttaatggccc tgtgcaaagt gaaaccggag tacaagctga cccggagcgg       420
     aataaaagtg acgtgttttt ccgtggagga atttaacacc gttcgagagc tgctgcttga       480
     gtacaaagtg caattctact cgcacgatcg acgaagcgaa cgatcccacc gggtmgttct       540
     gcgaggactc ccagaagtgg atgtggagat catcaaggat cgactcaagg aggaccataa       600
     ccttgatgtt ttggatgtga aggccatcaa gcggaaggaa aagtctaccg cgggtgaaac       660
     cccttatatt gtcttctttc ccaagggaca cacgaacctc aagaagctga gtgcaattaa       720
     gaaaatggga ccagtcatcg tccgatggga ggcctaccgg aacgagcaac ccaacgtgac       780
     ccagtgcagg aattgcctcc gcctgggaca cggagccagg aactgttatc tcaaaagcag       840
     atgcaacaac tgtgggcgat tccacaaaac ggaacactgt aaagtcgaag taactcaacc       900
     caaaaagtgt gctaactgct ctggatcgca cgagggtctg gaccgtagtt gccccaaacg       960
     tgcgcagttc atccagtcga ggcagcaggc gtccaagccg aagccgccag cwtggaakaa      1020
     ggacaaacag agtccggtgg taccgtcgtt ctccgcggcg gatttccctc cgctgccggt      1080
     tccggtcccg atcccggata agctgaagaa gacagaacca caatccgcag ctgatgcagg      1140
     aagcagtcga ggaaacactg gccctggcgc cggtggccaa cccaaggcga taggagagga      1200
     ggtgctttac agcacggagg agctgtggaa gatgttcmtc ggggagctgt ggaagatgtt      1260
     ctacgagttc accgcgcggc tgaggagttg caagacccgc tcggaccagg aaagggtggt      1320
     cggcaccatg tcccgcaagt tcggtgcgga ttaactcctg tgtgtattta tttattttta      1380
     tgcatttgat ccccggtcct aaccaggtct cggtaccgaa gaggacctaa taaaaataaa      1440
     ttagcgaata aaaaaaaa                                                    1458
//
ID   Jockey-N7_CQ repbase;    DNA;    INV; 1814 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1814
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 592-592 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >92%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..1507
FT                 /product="Jockey-N7_CQ_1p"
FT                 /translation="MGRNTRGRGSSSAPRGRGRASSCSSIGKTSSSGSKRS
FT                 TNLLKLPSNYVPARSPIRTRGLAALANPDQPGTSGLSTNKPGTSSTAVPTS
FT                 NGFAALSDDNKEDDDDDVSGGDGVTTTPSQAKGTSTAGEQEXKKSNKKMPP
FT                 ITVPGRPAVEIEGALADADCQYLMRINKSSVNIITRDRPRFEKVLKTLKDA
FT                 NIQYYTHDSPENLPVKVVVTGFSILVPPKEFVDVILAKKNIYPREAKVLSH
FT                 KVTEVGDQILWLLYFERGSVKIQDLRKVKSLEGFMVSWRYFSKRPSDAAQC
FT                 HRCQRFGHGSRNCTLAPKCVKCSAAHLTAACTLPKKASLGKDNQAEQNKRN
FT                 VKCANCDGNHTANYRGCTARKTYLEALEKRKKPAPHSSRTSTGQPSTEPRQ
FT                 TNPPGFGRTYASVAATANGPTPDSNSDGDLFTLTEFLSLARDMFTRLNTCR
FT                 NKLEQFFALQELMGKYLCPA"
XX
SQ   Sequence 1814 BP; 477 A; 478 C; 440 G; 418 T; 1 other;
     cattggggtc gttaccctgt tcgcagcaac atcgcctgtg ttgatgctcc gcgaattttt        60
     ttcgatttac ggtgaaagtg cgttgtatta atcgcgagtt cttccccgca cgatgggcag       120
     gaacacccgc ggccgtggca gctcgagtgc acctcgagga cgtggccggg ccagttcctg       180
     cagcagcatc ggaaagacct cctcgtctgg ctccaaacgg tcaacaaacc tgctgaagct       240
     gccatccaac tacgtacctg cgcgtagccc catacgtacg cgtggactag cggcacttgc       300
     caacccggat caacccggaa ccagtggatt gtccaccaac aagccgggaa cttcctcgac       360
     ggcggttcca acctcaaacg gtttcgctgc gttgtctgat gacaacaaag aagacgacga       420
     cgacgacgtc agtggtggcg atggtgttac tactacaccg tcgcaggcta agggcacctc       480
     caccgcgggg gagcaagagt saaaaaaatc gaacaaaaaa atgccaccga ttacagtgcc       540
     tggtcgccca gctgttgaaa tcgagggagc attggcggat gccgactgtc aatacctgat       600
     gcgtattaac aagtcgtccg taaacatcat cacacgagat cgcccgcgtt tcgagaaagt       660
     gctgaaaacg ctgaaagatg caaacattca gtactacacg catgattcgc cggaaaacct       720
     tccggtaaag gtagtggtga ctgggttctc catcctagtg ccacccaagg aattcgtgga       780
     tgtaattctc gcgaaaaaaa atatttatcc gcgagaagct aaagtgctct cgcataaggt       840
     aaccgaggtc ggagaccaga ttctctggct gctgtacttc gaacgcggtt ccgttaagat       900
     ccaggacctg cgcaaagtta aatcgctgga aggattcatg gtgagctgga gatacttcag       960
     taagcggcct tccgatgctg cccaatgtca ccgatgccaa cgttttggac acggttcccg      1020
     gaactgcact ttggcgccga agtgtgtcaa gtgcagcgca gcccacctca cggctgcatg      1080
     cacgctgccc aagaaagcat ccctgggaaa ggacaaccaa gccgagcaga acaagcggaa      1140
     cgtgaagtgt gctaactgtg acggtaacca cactgccaat taccgcgggt gcaccgctag      1200
     gaagacctac ctcgaggcgc tggagaagag gaaaaagcca gcaccacatt cctcaaggac      1260
     ttcgacaggt caaccctcga ccgaaccccg tcaaacgaat cctcctggat tcgggcgtac      1320
     ttacgccagc gtggcggcta ccgcaaacgg tccaaccccg gacagcaaca gtgatggtga      1380
     tttattcacc ctcaccgaat tcctctccct tgcgagggac atgtttacgc gactcaacac      1440
     ttgccgaaac aagctggagc agttcttcgc gctgcaagag ctgatgggga agtacctatg      1500
     ccctgcatag gtgcaagctc acacactgtg gaacagtctt cgccttcagt aacgaactga      1560
     ttttttttct gtgatatata tttaagcttt cctatcctcc ttctctttcc atagtaatag      1620
     tagcagttat tttagaaagt tttttctgct ctcgcttaac cgactgaaac tgaatttatt      1680
     tcatccaatt gattatattt gaatttattt gtagttgtaa ggatctccaa aactctgcat      1740
     tctgttatta gttaagcaaa ttgtattctg attagtacaa caaataaaca tgaattgaat      1800
     tgaattgaat tgaa                                                        1814
//
ID   Jockey-N8_CQ repbase;    DNA;    INV; 1839 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Jockey-like non-LTR retrotransposon family from
DE   Culex quinquefasciatus - consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   nonautonomous; Jockey-N8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1839
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Jockey non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 593-593 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity. This family encodes a protein similar to Jockey ORF1p
CC   but does not encode ORF2p. Thus it is a non-autonomous non-LTR
CC   retrotransposon derived from Jockey, like HeT-A.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1551
FT                 /product="Jockey-N8_CQ_1p"
FT                 /translation="MPRAGRGRGSSSAASKNPRSSSTGRVQKGKHTNAAST
FT                 AIAHGSVPGDVTDPSFLHVSYRPRESPVRTRQSTRASGSTSDQQQQQQSTS
FT                 TTTTTTSNVPTSNEFEMLSGEENNTASDSSSAGDDDDDDELARKQGKQKKC
FT                 NSPKERRPPPIFVLDTLADDVDELLEGLQYCLKISKTSVQVITHKKQNFDL
FT                 VVKKLKLRNFKFFTFDPAEKVPVKIVLQGYPDRPISDLEEHLSGVKVKPRE
FT                 VKVLSKSTTVTGTYTLYLLYFDRGSVKIQDLRQIKALDGFFVTWRFYTKNP
FT                 TDAAQCHRCQKFGHGSRNCNLPPRCVKCGETHFTERCNLPRKDQLGENAQQ
FT                 HKARVKCANCGGNHTANFRGCAARKKYLEEQDKKKKAPASRQPPKTSSTNA
FT                 AAAGGGAVPSTNPAFPPGWGGSYARVAASGSGTSPGQADVTGDDLFTLPEF
FT                 FALAGEMLTRFRACRNKAEQFQALSELMMKYIYNG"
XX
SQ   Sequence 1839 BP; 512 A; 471 C; 450 G; 406 T; 0 other;
     catcgggact ggcaacacca gccagcaaca gtcaactgtt cggagctcct caaacttttc        60
     gattttttcg ccgtaattaa cagtgtttac ccgcgagttt gctgctccag catgccaagg       120
     gccggccgtg gccgtggcag ttcgagtgcg gcctcgaaaa acccgcgaag ttcatctacc       180
     ggcagagtgc agaaaggtaa acataccaac gccgcatcga ccgccatcgc gcacgggagc       240
     gtgcccggtg acgtcaccga tccttctttt ttacacgtgt cataccgtcc acgtgagtcc       300
     ccagtacgga cgagacaatc gacccgggca tccggaagta cttccgacca gcagcagcag       360
     cagcagtcca ccagcactac gacaacaacc acttccaacg ttcccaccag caacgaattt       420
     gagatgctga gtggagaaga aaacaacacc gccagtgaca gcagcagtgc tggcgacgac       480
     gatgacgatg atgaacttgc gcgcaagcaa ggaaagcaga aaaagtgtaa ctctccgaag       540
     gaacgacgac cacctccaat ttttgttttg gatacgttgg cggacgatgt tgacgagttg       600
     cttgagggac tccaatattg tctcaaaatt agtaaaactt cggtgcaagt gattacgcat       660
     aaaaaacaga atttcgactt ggtagtgaag aagttgaagt tgcgaaactt caaattcttc       720
     acatttgacc cagcagagaa ggtcccagtg aagatcgtcc ttcagggata tccggaccgc       780
     ccgatctccg acctggaaga acacctgtcg ggcgtcaagg ttaagcctcg agaggttaag       840
     gtgctctcga aatcgacaac ggtgacaggt acgtacacat tgtacctcct gtacttcgat       900
     cgtgggtcgg tcaaaatcca ggacctacgg cagatcaaag cactggacgg cttcttcgtg       960
     acgtggcgat tctacacgaa gaatccgacc gacgcagcgc aatgccaccg ctgtcaaaaa      1020
     ttcggacacg gttcaagaaa ctgtaatctt ccgccccggt gcgttaagtg cggtgagacc      1080
     cacttcaccg aaaggtgcaa tcttccgcgg aaagaccagc tgggggaaaa cgcccagcag      1140
     cacaaagcgc gcgtcaagtg cgcgaactgt ggtggaaacc acacggcgaa tttccgtggc      1200
     tgtgccgcgc ggaaaaagta cctcgaggag caggacaaga agaagaaagc gccagcgtcc      1260
     cgccaacctc caaagacttc gagcacgaac gctgcagcag ctggcggcgg agcggttcca      1320
     tcgaccaacc cagcgttccc tcccggttgg ggaggttcgt acgctagagt agccgcttct      1380
     gggagcggta cttcaccggg acaagcagac gttaccggag atgatctctt cacgcttccc      1440
     gagtttttcg ctcttgctgg agagatgctc acgcgctttc gtgcctgccg gaacaaggca      1500
     gaacaattcc aagctctgag tgagcttatg atgaagtata tctacaacgg ataagctgcc      1560
     ttgtgcagcg aagtttttcg acgtcaaaag acaaaacaaa ctgtgatcta gttttaagct      1620
     tttctatctc tatccttttc cttagcaaat ttagaaggtt tttttttaaa ataatttttc      1680
     cttctgttgg caaatccatt gttagaatat ccaattacat caaaatgaac tatagtacaa      1740
     atcatagttg aaaggtactc caaaactcta ttaggttata agaattacga aattgtgaat      1800
     tgattattta ctaataaaaa ctaattgaat cgaattgaa                             1839
//
ID   JOCKEY2     repbase;    DNA;    INV; 3428 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   JOCKEY2 is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; ORF1;
KW   reverse transcriptase; ORF2; AP endonuclease; RNase H;
KW   DNA binding protein; JOCKEY clad; JOCKEY2.
XX
NM   JOCKEY2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3428
RA   Kapitonov V.V. and Jurka J.;
RT   "JOCKEY2, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 5-5 (2002).
XX
DR   [1] (Consensus)
XX
CC   JOCKEY2 belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   Its copies have 3' poly(A) tail and they are flanked by ~10-bp
CC   direct repeats generated upon integration into genome.
CC   JOCKEY2 forms a separate family of retrotransposons that were
CC   active in the ancestral form of the D. melanogaster genome ~5 Myr
CC   ago. There are ~20 copies of JOCKEY2 in the sequenced genome,
CC   they are ~8% divergent from the consensus sequence.
CC   The 5'-portion of JOCKEY2 cannot be reconstructed completely
CC   from the current sequence data. The consensus sequence contains
CC   several deletion (~200-bp at position 250, ~900-bp at position
CC   307,
CC   and ~370-bp at position 1365).
CC   JOCKEY_DF element identified previously in D. funebris (GenBank,
CC   M38437) is currently the closest element to JOCKEY2. There is
CC   a 71% identity between JOCKEY2 and JOCKEY_DF, whereas
CC   JOCKEY from D. melanogaster (LINEJ1_DM) is only 66% identical to
CC   JOCKEY2.
CC   The JOCKEY2 ORF1 and ORF2, which encode the Jockey-like gag and
CC   pol proteins, are corrupted by mutations. ORF2 is defined by
CC   positions 879-3221.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..727
FT                 /product="JOCKEY2_1p"
FT                 /translation="AQPSRRFVRPSSTPWARLLQFVLRLLSLELAKLTTSS
FT                 NTNVTNTITTTQASCSQARSAAMSDAIFLGTPKTIVSRIQSVASVLGPTQL
FT                 ALRYARVTIICASAAVVIMLQRTKTALSELKKERSSSQTQGSLLLLLMATL
FT                 SALKKVKAILTDSFRLRPSEAIFQPPILYRPKALNLVHLRLTNTTVIQTHH
FT                 KT"
FT   CDS           join(1498..1875,1830..3218)
FT                 /product="JOCKEY2_2p"
FT                 /translation="PKENSYIYTTFWITWAPMPLHNSPCGESRNGLSFRLV
FT                 RNPLQGARLVVGPHITGQSRSVCKELGAKILAARICRCESLPFGCRVSFNA
FT                 ISNGTARGSCHSRRTETTCFLVEFKKKPRFMTFSTTERIQKKTAVHDLLDN
FT                 RTIKTLSDHALQFLAQNFNSVLLEGYFPKVWKTANIILILKPGKRPTEVDS
FT                 YRPISLLLSLGKIMERIILNRMRDVEPVVLAIPDFQFGFRTQHGTSEQLQR
FT                 VVNFALEALERKEYAVADFLDIQQAFDRLWHPGLLHKAKKILTPQLFQLVT
FT                 SFLLGRTFCVTTDGCTSSVKAIEAGVPQGSVLGPTLYSIFSADMPTQTAVT
FT                 GLDRKDVLIATYADNTAVLTKSNSIIEASDALQEYLDAFQNWAELWNICIN
FT                 ADKCANVTFTKRIGSCHSVSLKERVLDHKSSYKYLGVILDRSLTFGKHVTA
FT                 IQQSFKNKVSKMSWLIAARNKLSLANKVKIYKSILASGLFYAIQVYGIAAK
FT                 THLNKIRVLQAKTLRKITGAPWYMRTRDIERDLNVTKIGDRIQEIAKKYND
FT                 RLESHPNSLARRLSIAAQSHRTSTRRRLKRHHPQDLTDRDLT"
XX
SQ   Sequence 3428 BP; 1080 A; 784 C; 703 G; 861 T; 0 other;
     ccttcgttgc attcggacgt tcgcgattgt ctagtctttt tgtagtgaaa catcaacaaa        60
     tcttccaatc ttactgtgca cgcgcacaat ttctatttct atccactgca cagcagtggt       120
     gacagacaat tacggtactt atcatagata agctcaacca agccgacgct ttgtacgccc       180
     ctcgtctacg ccttgggcaa ggctgttaca gtttgttctc cgcttgttat ctctcgagct       240
     tgcgaagttg acaactagta gtaacaccaa tgttaccaac accataacca cgactcaagc       300
     tagctgttcg caggcaagaa gtgctgcaat gtctgatgcc atatttttgg gcactccaaa       360
     aactattgtc tccaggatcc aatctgtggc aagtgtgctg ggccccacgc aactggctct       420
     acgctatgca cgagtgacaa ttatttgtgc atcagctgcg gtggtgatca tgcttcaacg       480
     gacaaaaact gccctgtcag aattgaaaaa ggaaagaagc tctagccaaa cccaaggctc       540
     cctacttttg ttgctcatgg caacactgtc agctctaaaa aaggtgaaag ctatactcac       600
     ggattcattc cggctgaggc catcagaagc aatatttcaa ccgccgatat tgtacaggcc       660
     aaaggccctc aatttggttc acttgcgact caccaacacc acagtgatcc aaactcacca       720
     caagacttag gctttggaaa aaagtttcag gcgctggaaa gcgccatcca ggatataaac       780
     tcgagaatgg acaaaatctt caaactaatt ggggagactg tggaatcaaa aaaggttttt       840
     agagaactgg ttcagatctt catatcacgg acgtcaaaat gacccaacca ataataaaaa       900
     tcggattgtg gaatacacga ggactagcta gaaactctga ggagcttcag cttttcctaa       960
     ggatgcaaaa tattgatatc atgcttgcca ccgaaacaaa cgtgcgggaa ggacagcgta      1020
     tctctctacg tggttactcc acctacgacg ccagtggaaa cagcagaggt ggagccactg      1080
     tcatagtgca ctcttccttg aatcattgtc cccaaccccc aatctcaacc aacgaccggc      1140
     aggtagcgag cgtgcagctg cagacctcag agggaacagt tacttaccca cccagcgagc      1200
     ggttgataaa agcttatatt gagtaacttt ttgtaacact tggtggcata tttatgcagg      1260
     tggagactac aatgcaaaac atcattggtg gggaatctca agagcctgcg ccagaggttt      1320
     acagtgcgtt atttaaaaat aaataatatc aattgtaata atggatatta aaactgtgat      1380
     tcgctcccta tccagagaaa aagctaaagg aatcatccaa ggaatttgca agaacaggag      1440
     atttccgaac ccagcagatc tacagaaggt tatcaaatcg gctcaataaa gtgctgaccc      1500
     aaagaaaaca gctacatata tacaaccttt tggattacat gggcaccgat gccccttcac      1560
     aattctccct gtggagaatc acgaaatggt ttaagtttca ggcttgtcag aaatccgctg      1620
     caaggagccc gtctggtggt tggtccgcac atcacaggac aaagcagaag tgtttgcaag      1680
     gagcttggag caaagatttt agccgctcgc atatgccgat gcgaatcatt gccgtttggt      1740
     tgcagagtct cttttaacgc catttcaaat ggcactgccc gcggatcctg tcactctcga      1800
     agaactgaaa caacttgttt ccttgttgaa ttcaaaaaaa aaccgcggtt catgaccttc      1860
     tcgacaacag aacgataaaa accctatcag accatgctct gcaatttctg gcacaaaatt      1920
     ttaacagcgt tttacttgag ggttatttcc caaaagtctg gaagactgca aacataatcc      1980
     tgatactgaa accagggaaa aggccaacag aggtagactc gtatagacca atcagcctcc      2040
     tcctttccct tggtaaaatt atggaaagga taattctcaa cagaatgcgt gacgttgagc      2100
     ctgtagtatt ggcgatacct gatttccaat tcggattccg gactcaacat ggaacatccg      2160
     agcaactcca aagagttgtc aattttgcgc tagaagccct agaaaggaaa gagtatgcgg      2220
     tagcagattt tctggacatt caacaagctt ttgacagact ttggcatcct ggacttctac      2280
     ataaagcaaa gaaaatacta acaccccagc tattccagct tgtgacgagc tttttgttag      2340
     gacgaacttt ctgtgtgacg accgatggat gcacttcgtc cgttaaagcc atcgaagctg      2400
     gagtacctca aggaagtgtg ttaggcccta ctctatactc catcttctcc gcggacatgc      2460
     ccacccagac agcagtcact ggattagatc gtaaagatgt gctgattgca acatatgctg      2520
     acaacacagc ggtactgaca aaaagcaaca gcattatcga ggcctcagac gcactgcaag      2580
     agtacttgga cgcattccag aattgggcag agttgtggaa catctgcatc aatgctgaca      2640
     aatgtgcaaa cgtcaccttc acaaagcgca taggtagttg ccattctgtc tcacttaaag      2700
     aaagagtgct tgaccacaag tcatcataca aatatcttgg agtgatttta gatagaagct      2760
     taaccttcgg aaagcatgtc acggcgatac agcagtcctt taaaaataag gtttctaaaa      2820
     tgtcctggtt aattgctgcc cgcaacaagc tttccctcgc caacaaggtt aaaatttaca      2880
     agagcatatt agcttctggt ctattctatg ccatacaggt gtatggaatc gctgccaaaa      2940
     cgcacctgaa taaaattcgg gttcttcagg caaaaactct gaggaagatc acaggcgctc      3000
     cttggtacat gaggaccaga gatatcgaac gtgatctgaa tgtgacaaaa attggagaca      3060
     ggattcagga aatagcgaaa aaatacaatg acagactaga atctcatcct aatagtctag      3120
     ctagacgact aagtatcgca gcccaaagcc atcggacaag tacgagaaga agattaaaac      3180
     gccaccaccc tcaagacctg actgaccggg acttgacata aatcctactt aattaaaatc      3240
     ttctaaatat tactgcctaa acattccatt tctttaatac tcataatcat ataatctttg      3300
     taaataactt agatattaag aatcgtttaa attgataccg attagattaa gttgtccaag      3360
     aagggtaata gtacgctagt caattaaata aaataatttc gtttaataaa ttaattaaaa      3420
     aaaaaaaa                                                               3428
//
ID   Jockey_Ele10 repbase;    DNA;    INV; 4363 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele10.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4363
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4363
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 23
CC   sequences with >90% identity, and ~93% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           309..1445
FT                 /product="Jockey_Ele10_1p"
FT                 /translation="MEIGPSIQPMVATQNLFETLSTDDPDGNVNNRSQSPL
FT                 NAPKKNRRPPPITIVSKGTKQSRELMNLANIPQSGYQLKAVKTGTQLNATD
FT                 EDVFNAVIKVLQDSNTEFFTYTPSHQQPVRFILSGLALYDLAELKEELLLN
FT                 EVRPLDLKIFSRKKSGPEESVLYLLCFVKGSTKLSELQGVKTLFNTVVKWR
FT                 FFTRKPDDSVQCHRCQRFGHGMRFCNISPSCVKCGEKHLTANCKLPVKANL
FT                 KDASVSRSLIRCANCSGNHTANFRGCPCRLSYIKQLEENRQRASKKTTAPN
FT                 TRAPPTSLPRINSSVQNRLNNPSAAGGPSYSQVLQGSGQPDRRANLFSVSE
FT                 FLCLARDLFHRLQGCRSKEQQFLALSELIIKYVYNG"
FT   CDS           1441..4113
FT                 /product="Jockey_Ele10_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASLPCLRVVNWNGRSVHSKSLEFFDFVQRHGIDVAV
FT                 VTETWLRPNTSFLHPNFSCVRLDRPSSDEGGRGGGVLIAVRKGLAFKQLNI
FT                 STKKIEATGITISSAGNDELCIIAAYFPGTRRGSEWSKFRREIRSLVTQNS
FT                 PYFVIGDLNARHRSWNCAKNNKAGTILFQEASHSGFNINFPDSPTFIPSGR
FT                 GHPSTLDIVLSNNLVNMSKPTVHNELSSDHLPVTFEISLSSDPVANTESVR
FT                 CYARADWLAFQRLINTKLCPNDPMFSNIRDENGVNAALNFFKDALLDAESV
FT                 AVPLVTPRPYDVAQIPDETKLLIQLRNRRRRQWMRTRDPMLKQIVLSLNDR
FT                 IRGECANARFSKFSXTLATMERGDNKLWRITKALKKTTKYSPPLRSGDTLF
FT                 ACPKEKAKLLAESFALAHNNQSTSDRDTVEAVERSVEQIDLSPPVADNSWL
FT                 VRPKEIATIIRNLKPKKAPGHDGIKNMLLKRLPRKGYVVLAKIFSACLKLC
FT                 YFPDDWKHAIVVAIPKANKDHSIPSNYRPISLLPTLSKLFERVILTRIEKH
FT                 LETVRLIPHEQFGFQKGHSTSHQIVRLVKEVRRNFQQGKSSGLILLDVEKA
FT                 YDSVWHEAILHKMLLGNFPMSILKIMRSFLKDRSFQVAVNGCTSDRMSVPF
FT                 GVPQGSVLSPTLYNIFSADIVKVNGVQYYFFADDTGFLASHRDAGTIIETL
FT                 QHAQNSIQEYQRKWKVKVNPTKSQAIFFTRRRSPRHLPQSNVSCNGVDIPW
FT                 SPNVGYLGITLDQKLKFGCHVTNCLQKCDKLVKMLYPLVKRRSRLDPGTKI
FT                 LLYKTVLRPTVAYGFPAWYDCAQSHRNKVQVKQNRLLKMTLDLSPFHPTDD
FT                 VHRLAGVERIDDWFRRLMPKFLDSCSSSVNPLLQELAA"
XX
SQ   Sequence 4363 BP; 1164 A; 1152 C; 932 G; 1108 T; 7 other;
     cagtttcgag ctgtcaaagc tattgatgca caagcagcaa aatttgatgc gttgtttttc        60
     gttgatttcg ctcatttttt tcgccgaata attaacttcg tgccactaaa gtggataacc       120
     acggttcggg tcgcaatact ccgcgcaata atgtgcaaag ttcgcaatcc aacataatta       180
     ttcgccgtga ttacgataaa actccgtcgg taacctcaat cgtcgactcc ggtgatcgca       240
     acgatgccaa gcggctaaaa cgtacccact gtcagccttc tccagccgac gatcgcaatt       300
     ctctcccgat ggagatcgga ccatcaatcc aacctatggt tgctactcag aacctcttcg       360
     aaacgctgtc cactgacgac ccagatggaa acgtgaacaa cagatcgcaa tcgccactca       420
     atgccccgaa gaagaatcgt cgccctcctc caatcactat cgtaagcaag ggcaccaaac       480
     aatcccgcga gctgatgaat cttgccaata tcccgcagtc cggctaccaa ctgaaagctg       540
     ttaaaactgg tacgcagctt aatgccacgg acgaggacgt tttcaatgcc gtcatcaagg       600
     tactacaaga ctccaacacg gaatttttca cctacactcc gtcgcaccaa cagcccgtgc       660
     gattcatact ctcgggtctc gcactgtatg atttggctga gctgaaggag gaattgttgc       720
     tcaatgaagt gcgcccgttg gacctcaaaa ttttctctcg aaagaaaagt ggtcctgaag       780
     aaagtgtgct gtacctgctt tgtttcgtga aaggatctac caagctctcg gagctgcaag       840
     gagtaaagac actgttcaac acggtggtga agtggagatt tttcaccaga aaacctgacg       900
     attccgtcca gtgccatcgg tgtcaacgct tcggccatgg aatgcgcttc tgtaacatct       960
     ctccatcctg tgttaaatgc ggggagaaac atctcacagc aaactgcaag ctcccggtga      1020
     aggccaacct caaggatgct tccgtctcgc gcagtcttat tcggtgcgct aactgcagtg      1080
     gtaatcacac agccaacttc cgaggctgcc cctgccggct gagttatatc aaacaactcg      1140
     aagaaaatcg tcagcgtgct tcgaagaaaa ctacagcgcc caacacccgc gcaccaccga      1200
     cctctctccc taggatcaat tccagcgttc aaaatcgtct gaacaatcct agcgccgccg      1260
     gaggaccttc ttactcgcaa gtactgcagg gttctggcca accagatcga cgcgcaaatc      1320
     ttttttcggt cagcgagttt ctttgcctgg cgagggatct ttttcatcgt ttgcaaggct      1380
     gccgttctaa ggagcaacaa ttcctagctt tatccgagct aataatcaaa tacgtttaca      1440
     atggctagcc taccctgtct gcgcgtagtt aattggaacg gaagatccgt tcacagcaaa      1500
     tcgctagaat ttttcgattt tgtacaacgt catggcatag atgttgctgt cgtcaccgaa      1560
     acctggttgc gcccaaatac ttcattcctt catccaaatt tctcctgtgt tcgtctcgat      1620
     cggccatcaa gtgatgaagg cggcagagga ggaggtgtac taatagctgt tcgaaaagga      1680
     ttggctttca agcagctgaa tatttcgacc aaaaaaatcg aggcaacagg cattaccatc      1740
     tcatcagctg gtaatgatga actttgcatt atcgctgcat acttccctgg aacgcgtcgg      1800
     ggctctgagt ggtccaaatt tcgacgggaa atccgctctc tggtcacgca aaactcaccg      1860
     tatttcgtca ttggggactt aaacgccaga catcgttctt ggaactgtgc caagaataac      1920
     aaagctggaa ctatcctgtt tcaggaggct tcacactccg gcttcaacat caacttcccg      1980
     gactccccta cgtttattcc ttcagggcga gggcacccgt ccacgttaga cattgtgctg      2040
     tccaacaatt tggtcaacat gtcgaaacca accgtacaca acgagctgtc gtctgaccac      2100
     ctgcccgtta ccttcgagat cagtctgtcg tccgatcctg tggcaaatac tgaatctgtt      2160
     cgctgctacg cacgtgcaga ctggcttgct ttccaacggt tgataaacac aaaactttgc      2220
     ccgaacgacc ctatgttttc maacatccgc gatgaaaacg gagtcaatgc tgcgctcaat      2280
     ttcttcaaag acgctcttct cgacgcagaa tctgttgctg tgccgctggt cacccctcgt      2340
     ccgtacgatg tmgcgcaaat ccccgacgaa acaaaactcc tcatccagct tcgtaaccgg      2400
     cgtcggcgac agtggatgag aaccagagat cctatgctga aacaaattgt tctttcgctm      2460
     aacgatcgca ttcgtgggga gtgcgcaaac gcacggttca gcaagttttc tcamacstta      2520
     gctacaatgg agcgtggcga taataaactt tggcgcatca ccaaagcgct gaagaaaacg      2580
     accaagtaca gccccccgct gcgcagtgga gacacgttat tcgcttgtcc taaggagaag      2640
     gccaaactgc tcgctgaaag tttcgcgctt gctcacaaca atcaatccac tagcgacagg      2700
     gacackgttg aagctgttga gcgttccgtc gaacagatcg acctttctcc gcctgttgcc      2760
     gacaactcct ggttagtccg ccccaaggaa attgccacaa tcattcgcaa tttgaaaccc      2820
     aaaaaagcgc ctggtcacga tggaatcaaa aacatgcttc taaaacgact tcctcgaaaa      2880
     gggtatgtgg ttctcgctaa aattttctcc gcttgcctca aactatgcta ctttcccgat      2940
     gactggaaac acgctatagt tgtcgccatt ccgaaagcga ataaggacca ttccatcccc      3000
     tctaactaca gaccaatcag cctgctgcca acattgagca aacttttcga acgcgtcatt      3060
     ttgacgcgca tcgagaaaca cctggagaca gttcgtttga ttcctcatga acaatttggg      3120
     tttcaaaaag ggcattctac cagccaccaa atcgtgcggc tggtgaagga ggtaagacgg      3180
     aacttccagc aaggaaaatc atcaggccta atcctccttg atgtagagaa agcctacgat      3240
     tcagtatggc atgaagcgat cttgcacaaa atgttgctgg gcaattttcc catgtcgatt      3300
     ctgaaaataa tgcgaagctt cctgaaggat cgttccttcc aagtggctgt aaacggttgt      3360
     acgtccgatc gaatgtccgt accattcggt gttcctcaag gttctgttct gagcccaaca      3420
     ctatacaaca ttttttccgc cgacatagta aaagtcaacg gagtccagta ctactttttc      3480
     gctgacgaca ctggtttcct tgcctcacat cgcgacgcag gaacgataat cgaaacgcta      3540
     cagcatgccc agaactccat ccaagagtac caaagaaaat ggaaggtgaa agtcaaccca      3600
     acgaaatcgc aagccatatt ctttactcgg cgtcgtagcc ctcgkcacct accccagagt      3660
     aacgtgtctt gcaacggcgt ggacattcca tggtcaccaa atgttggcta tcttggtata      3720
     accctggatc agaagctaaa gtttggttgt cacgtgacca actgcctcca gaaatgcgat      3780
     aagctcgtca aaatgctgta ccctcttgtt aaaagacgct cccgtttgga ccctggtacc      3840
     aagatcctgc tatacaaaac cgttctcagg ccaacggttg cgtatggctt tcctgcttgg      3900
     tacgactgtg cacaatccca ccggaacaaa gtccaagtta agcaaaaccg tttgctcaag      3960
     atgacgctgg atttgagccc tttccatccg actgacgacg tacaccgact tgctggcgtt      4020
     gagcggatcg atgattggtt tcggagatta atgcccaaat tcctggacag ctgttcgtca      4080
     tctgtaaatc ctcttttaca agagctggcc gcatagatgt gatgtgatat tagatttaag      4140
     cttttctttt ttctgtcttt ttcctaagca aattcgaagg tttttttttg ttcttttcct      4200
     tccctgtcca aatagttgct tgtcgttcat taacacaaaa tgtgctcatt tgttctatgt      4260
     cattgttgta aggaattcca tatctcgatt gttaaactct aaacacaaat tgtaatcgct      4320
     aaggtaaaaa taaaaataat tgaaattgaa aaaaaattga aaa                        4363
//
ID   Jockey_Ele2 repbase;    DNA;    INV; 4422 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4422
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4422
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 16 sequences with >97% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           178..1530
FT                 /product="Jockey_Ele2_1p"
FT                 /translation="MIRKNYDKSKVRITSTQTEISTMVDNDLLTANVQQRR
FT                 RHNSTDENSMRPRNQSSDSGHQFSSQPIAGCSNANNVLIAVPNVPTENPFD
FT                 TLMDNEELQERVTPQQSASKIHCPPIFVQNGTVKDINKLMSSLEVGEKNYA
FT                 QKIIKGGIRLHVKEKTKFTVVVAALKSENVKFFTHGTSDEVPIRIVLAGLP
FT                 VLDLEEVREELKQANVLPVEVKLLYSSKDEDSALYLLKFPKGAVKLKELQK
FT                 IKMLFNVVVSWRFFSRRIGEVIQCYRCQKFGHGMRNCNMDAKCVKCGELHL
FT                 TKDCTLPPRRATDDRSKIRCANCSQNHTSSYKGCPARKNHIQENEEKKKMQ
FT                 SSRRRDAPASSHAPGGRSFRSTFVTPSKSFADAIKDGSSATVVAAAAVAVD
FT                 GAAGGGGYAGPDQSELFSLHEFMNLASDLFTRLSSCKTKAQQFLALSELMI
FT                 KYVYNG"
FT   CDS           1517..4195
FT                 /product="Jockey_Ele2_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MCTMDNTTSLNILNWNSRSIRNKESEFFNLLDNQNID
FT                 IAVVTETWLRPDISIYHHDYTCTRLDRSSSEATRGGGVAIFIRKGIKFTQS
FT                 GGLNTNVIEALQVTVHTDATPIHLVAAYFPGSSNLSTLNKFKRDLRTITGF
FT                 SEPFFVIGDFNARHRYWNCQKMNKAGEILFREYETSDFFIHFPAGFTRMAP
FT                 NGRSTSTLDLVLSGNSMDMSVPETIQDLSSDHFPVMFTINADTPFKNEFRQ
FT                 YRNYKRANWTVYVNSVSRSLDLTSDVINNLDTEDKIDTAIETLVTTLVEAE
FT                 RVSVPVVNCNPQKRDLPDRIKLLIRLRNVRRRQYCRTRDPLLRTIVENLNL
FT                 QIRNESATYKFRNFGTTIRNLANGSSKFWKISKNLRNKIKYQPPLRCGNRL
FT                 MVSDAEKANTLAEHFASSHNNQLRSDPETTSEVHRAMEDLESHALHNIDVA
FT                 TFTKPSEIKKIIQRLKSKKAPGQDGIRNAMLKRLPRKGLVYLTKVFNACLK
FT                 LTYFPEKWKHANVVAIPKANKDVTLPTNYRPISLLSSLSKILERLILNRLN
FT                 RHLEANPVVPNEQFGFKNGHSTNHQLARITRLVKQGFSAKKSSGMILLDVE
FT                 KAYDSVWQEAIIFKLQKANCPLYLVKLIKSFLLGRSFAVSVNGCTSGVHRI
FT                 PCGVPQGSVLSPTLYNIFTSDVLIVDGVTYAFFADDTAFLATDDDPKIVTC
FT                 KLQHAQNKLQEFQHKWRIKTNATKSQAIFFTRRRSPRFLPTAEINVNGSNI
FT                 PWKAEVEYLGLTLDQKLLFDKHINRAINKANCLSRSLYSLINRRSPLQIAN
FT                 KLLLYKCVFRPVLTYGCPVWGNCALSHLRRLQVKQNKLLKMMLDLSPWYCT
FT                 EEVHEIAEIETIFRFVEKAAERFRLSCEMSNNPLIVAIFP"
XX
SQ   Sequence 4422 BP; 1386 A; 980 C; 906 G; 1150 T; 0 other;
     cagttcatgc cgaaacgtca acaaggctag atcgatttgt tcatacgtat actcgttact        60
     gaataatttc tcaaaataca gtccgaaaaa tcaaaaactc tgggtaaacg taccccgggc       120
     gtgtcgtcta acgtcgcgag ttcggaatgt agccccaatg ggggaccgtg ttccataatg       180
     attcgtaaaa attacgataa aagtaaagtc cgcataacct caacgcaaac agagattagt       240
     accatggttg ataatgatct cttgaccgcc aatgtccagc aaaggcgtcg tcataactcg       300
     actgacgaaa acagtatgcg gcctcgaaac cagagcagcg atagtggtca ccagttttca       360
     tctcaaccga tagcaggctg cagcaatgcc aacaatgttt tgattgcggt tccaaacgtt       420
     ccgacagaaa atcctttcga tacgctcatg gacaatgaag agttgcaaga aagagtaaca       480
     ccacaacaat cagcatcgaa gattcactgc cctccaattt tcgtgcaaaa cggtactgtg       540
     aaggacataa ataaactaat gtcctcccta gaagtaggtg agaaaaatta cgcacagaaa       600
     atcatcaaag gcggcattcg tcttcacgtt aaagaaaaga cgaaatttac cgttgttgtt       660
     gctgccctca aatcggaaaa tgttaaattt ttcacccacg gtacaagcga cgaagttccg       720
     atcagaatag tgctagctgg tctgccggtg ctcgatttgg aggaagtgcg agaagaactg       780
     aagcaagcaa atgttctccc agtagaggtc aagttactgt actcatcgaa agatgaagat       840
     tcagctctgt acctgctcaa attcccgaag ggtgccgtga aattgaagga actgcaaaaa       900
     ataaaaatgc tgttcaatgt agttgtcagt tggcgctttt tctcaaggag gattggagaa       960
     gttatccagt gttatcggtg tcaaaagttc ggccacggaa tgcgcaactg taatatggat      1020
     gcaaagtgtg tcaaatgtgg ggaactgcat ctcacgaagg actgtacatt accgcctcgt      1080
     agagcaacgg atgatcgttc aaaaattcgt tgcgccaatt gcagccagaa tcatacttct      1140
     agttacaaag gatgtccagc aaggaaaaac cacatccagg aaaatgaaga gaagaaaaag      1200
     atgcaaagct cacgaagaag ggatgcacct gcttcgtccc atgccccggg aggtcgcagc      1260
     tttcgttcca cgtttgttac tccgagtaaa tcattcgctg acgctatcaa agatgggtct      1320
     tctgctactg ttgttgctgc tgctgctgtt gctgttgatg gtgctgctgg tggtggtggt      1380
     tatgctggtc ccgatcaatc ggaactattt tcgctacacg agtttatgaa tcttgctagc      1440
     gatttattca ctcgtctctc ttcgtgtaaa acgaaggcac agcaatttct cgccttgtcg      1500
     gaattgatga tcaagtatgt gtacaatgga taacacaacc agcttgaaca tacttaattg      1560
     gaacagtcgt tctattcgta ataaggaaag cgaattcttc aatctactgg acaaccagaa      1620
     tatcgatatt gcagttgtga cagaaacctg gttacgtcca gatatctcca tctaccatca      1680
     tgactacaca tgcactcgct tagatcgttc ttcgtcggag gcaacccgag gaggaggcgt      1740
     ggcgatattt attcgaaaag gaattaaatt cacccaatct ggtggactga atactaacgt      1800
     catcgaggcc ttacaagtaa ccgttcacac cgacgctact ccaattcatc tagttgctgc      1860
     ttatttccct ggatcatcca acctaagtac gctcaacaaa ttcaaacgtg atcttcgtac      1920
     cataacaggg ttctctgagc catttttcgt aattggtgat tttaatgcca gacaccggta      1980
     ctggaattgc caaaaaatga acaaggcggg tgaaatactt ttccgggaat acgaaacatc      2040
     tgacttcttc attcatttcc cagctggttt tactcgaatg gctccaaacg gtagaagtac      2100
     gtctacactt gatctagtgc tgtcgggaaa ttccatggat atgtcagtcc cagaaacaat      2160
     tcaagatctt tcatcggatc attttccagt gatgttcact atcaatgctg atactccctt      2220
     caaaaatgag ttccgtcagt acaggaacta taaacgcgca aactggaccg tttatgtgaa      2280
     ctcagtctcc agaagtctgg atctaacatc tgacgtcata aataacctgg atactgaaga      2340
     caaaatcgat actgccattg aaacgcttgt taccacatta gttgaggctg aaagagtttc      2400
     ggtgccagtt gtcaactgta atcctcagaa gcgcgacctt ccagatcgga tcaaacttct      2460
     gattcgtttg aggaacgtac gaagaaggca atattgccga actagagatc ccttgctgcg      2520
     aacaattgtt gaaaatctca atctccaaat ccgcaacgaa agtgccacct acaagtttcg      2580
     aaattttggt acaaccatcc gtaatctagc aaatggtagc agcaaatttt ggaaaatcag      2640
     caaaaatctc cggaataaaa tcaaatacca accacctctt cgatgcggaa accggctcat      2700
     ggtgtctgac gcggaaaagg cgaatacatt agcagagcac tttgcaagct cacacaacaa      2760
     tcaacttcgc agtgatccag aaactacctc agaagtacat cgggcaatgg aggatttgga      2820
     aagtcacgct ctccataata tcgacgttgc cactttcact aaacctagcg aaataaagaa      2880
     aatcatccag agactaaaaa gcaaaaaagc accaggacaa gacgggattc gtaatgctat      2940
     gctcaagcgg cttcctcgaa aaggtttggt ttatttaacc aaagtcttca acgcttgcct      3000
     gaaactcacg tactttcctg agaagtggaa gcatgcaaat gttgtagcca ttccaaaagc      3060
     caacaaagac gttacccttc ctacaaacta tcgtccaatt agtttgctga gcagcctgag      3120
     taagatctta gaacggctaa ttctaaatcg cttgaatcgc cacctggaag caaatcctgt      3180
     agttcccaac gaacaattcg gcttcaagaa cggtcattca actaaccatc aactcgccag      3240
     aatcacgagg cttgttaaac aaggattttc ggctaaaaag tcatctggta tgatattgct      3300
     agatgtagaa aaggcttacg actccgtttg gcaggaagcg ataattttca aactccaaaa      3360
     agcaaactgc ccgctatacc tggtgaagtt gataaagtcg ttccttttgg ggaggtcctt      3420
     tgctgtatct gtcaacggtt gcacatcagg tgtccatcgt attccatgtg gagtacctca      3480
     aggatccgtc ctgagtccta cactctacaa catattcacc agtgatgtgc tgatagtgga      3540
     cggcgtcacc tacgcatttt ttgccgacga cactgcgttt ctagcgactg atgatgaccc      3600
     caaaattgtg acctgtaaac tccaacatgc ccagaataaa ttacaggaat ttcaacataa      3660
     atggcgaatc aaaaccaatg ctacgaaatc tcaagcaata tttttcacca gaaggcgatc      3720
     accgagattt ctaccaacag cagaaataaa cgtcaatgga tcgaacatcc cctggaaggc      3780
     ggaagtagaa tatttggggc taaccctaga tcaaaaacta ttgttcgata agcacataaa      3840
     tcgggccatc aacaaagcca actgtttatc tcgctccctt tactcattga taaatcgtcg      3900
     atcaccactc cagatagcca acaaactcct tctctacaaa tgtgtgttta ggcctgtcct      3960
     cacatatggc tgcccagttt ggggaaattg tgcgctgtcc cacctacgac ggcttcaagt      4020
     taaacagaac aagcttctga aaatgatgct tgatttaagc ccttggtatt gtacagaaga      4080
     ggtgcatgaa atagctgaaa ttgaaacaat tttcagattc gtagaaaaag ctgcagaaag      4140
     attcagatta tcttgcgaaa tgtctaataa tccactaatt gttgccattt ttccttaagc      4200
     atagctgtga tactattaga tgtaagaata gaataaaatt gaattcgagg gttttttttt      4260
     taatttttcc ctgttagttg aattttggaa ataataatcg acctcctgaa atagtttttg      4320
     acattactcg cagctgtaag tgacacaaat ctctgccaaa aaaaaaaacg aatttgtaac      4380
     aacattaggt agaatcgaat gaataaataa ataaataaat aa                         4422
//
ID   Jockey_Ele3 repbase;    DNA;    INV; 4423 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4423
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4423
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 25
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           233..1510
FT                 /product="Jockey_Ele3_1p"
FT                 /translation="MAEYVNKTLTHPTSASKSPTRVRSLDRISGQSMAYAN
FT                 TDACTSELDFTEGDGDTVASPFISPNQFEPLSDDDEGELPSASAQSKKPSK
FT                 VRLPPIFIMDSTISDIFKLLKDCSTPQSEDFLLKRNKSSVQLLTKSKDVFD
FT                 KTISTLKSKNVPFFTHGTSDNVPAKFVLSGLPLAELSKLKDELTRVNINPS
FT                 DVKVLSTTKTSQDTYALYVLYFPRGSVKIQDLRKTKALFNVAVSWRFYEKR
FT                 ADDAAQCYRCQRFGHGSTNCNLAPKCVKCGGKHLTDGCTLPKKANLSSKQN
FT                 DRSLLKCANCGANHTANFRGCPTRKAYLENLEKRKTKPVQRPPRMTNDDFP
FT                 SLVGQGTALHRTSPNAKGRATYAQISANTPLATSANHCNENLFTISEFLCL
FT                 ARDMFARLSGCRTKEQQFFALSELMIKYLYHG"
FT   CDS           1506..4178
FT                 /product="Jockey_Ele3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGDLTKLNIVNWNSRSILPKRIEFFDFLNQHQIDVAT
FT                 VTETWLSPKNSFHHPEYHCIRSDRRSNNNERGGGVLIAIKKGIKFSQLDLT
FT                 TGAIETVGIEIQNAAQPIHIIAAYFPGGHRGTSWNTFRRDIDNLVRRPEPF
FT                 FVAGDFNARHRQWNCLRANKAGNILASRASSSDFFIHAPSAFTYNPQNGRR
FT                 PSTLDLVLSNNLVNMSTVSVVNDLSSDHLPGRFDIDLIAPVITVTSTSRCY
FT                 ARANWQLYKRLVNEKIDLTAGVINNLNCSAAIDNSILLLTTTLKEAEAIAV
FT                 PNVPTKMYKDVKVSNSTRQLIQLRNVRRRQWIRTRDPLMLMIVESLNNRIR
FT                 EECMSERNRQFSRTISNLENGAKDVWKISKALRKTVKYSPPLHQIDTNTLI
FT                 SSPSEKANLLAECFASTHRNPLPSDDQTAIAVEESCTLIANTATAVNDVPM
FT                 IRPREIEKIIKSMKQKKAPGKDKIRNALLKNLPRKGLVMLTKIINACLRNS
FT                 YFPKVWKHAVVTAIPKPGKDITLPANYRPISLLPSMSKILERVILSRIEGH
FT                 LEGHNIIPAQQFGFKRGHSTSHQLVRLTQFIKTAFTSGKSAGMVLLDVEKA
FT                 YDSVWQDAILHKMRTANFPLYILKLLQSFLKERSFQVIVKGELSHVQQIPY
FT                 GVPQGAVLSPILYNIFTSDMVMVNGVEYFLFADDTGFVAVDKKAEVVIEKL
FT                 QTAQKAIEDYQRQWRIRINPSKTQAIFFTRRRNQRFLPQTQLTAMHHTVPW
FT                 SDEAKYLGLVMDKKLKFDKHIASILGKCDKLIKMLYPLICRRSRLNSVNKI
FT                 LIYKMIFRPIITYGFPAWHSCAQSRRMKLQVKQNKILKMMLDLPFNFSSDE
FT                 LQEVSHTEHLGSWTTKLLQKFWTGCTISENDLIVNLVP"
XX
SQ   Sequence 4423 BP; 1367 A; 1035 C; 888 G; 1133 T; 0 other;
     cagtttgaga accactggtt cagaagtaaa caagcctccg cgtactctga atttttggac        60
     cgtttttttc cgtcgcgttc gcaagtaaaa ttcgtgcgtc tgcatcctgg ggaaacccaa       120
     acccggtagc agtcaggaga agcaggatgc ggccaccagg acgtctcaaa ggatcataaa       180
     cagaaatgct actaaaactg tcaatactct aacctcaatc cccaaagaca gtatggcaga       240
     gtatgtgaac aaaacactga cccatcctac cagtgcttcg aaaagtccaa cccgtgttcg       300
     atctctggac agaatatcgg gtcaatcgat ggcatacgcc aacactgatg cctgtacaag       360
     tgaattggac tttacggaag gcgatggtga taccgtcgca tcaccattca tatctccaaa       420
     ccaatttgaa ccactgagtg acgatgatga gggtgaactt ccgagtgcaa gtgcacaatc       480
     gaagaagcct tccaaagtta gattgccgcc gattttcatc atggattcca caatcagtga       540
     tatattcaag ctgctgaagg actgttccac accacagagt gaggatttcc tgttaaagcg       600
     caacaaatct tcggtgcaac tcttaaccaa atcaaaggat gtgttcgaca aaaccatatc       660
     gacattaaag agtaagaacg ttccgttctt tacgcacggt acgtcagata acgtcccagc       720
     taaattcgtt ttgtcaggat tgccactcgc cgaactatcg aaactgaaag acgaactaac       780
     gagagttaac attaacccaa gtgacgtcaa agttctgtcg accacgaaga catctcaaga       840
     tacgtatgca ctatacgtac tctattttcc tcgcggttcc gtaaagatac aggatctgag       900
     gaaaacgaaa gcactgttca atgtagctgt atcgtggaga ttttatgaga aacgtgcaga       960
     cgacgctgcg caatgctatc gctgtcagcg ttttggacat ggctctacaa attgcaacct      1020
     tgcacccaaa tgtgtgaaat gtggtggaaa acatctcacc gatggatgca cactccccaa      1080
     gaaagccaat ctcagcagca aacaaaacga taggtccctg ttaaaatgtg cgaattgtgg      1140
     tgcaaaccac actgccaatt ttcgtggttg tccaactagg aaagcctatc tggaaaacct      1200
     tgagaagaga aagacaaagc ctgtacaacg cccgcctcgt atgacgaacg atgatttccc      1260
     atccctagtc ggccaaggta cagccctcca tagaacttct cctaatgcaa aaggaagagc      1320
     tacttatgcg caaatctctg ccaacacacc tctcgcaact tctgcaaacc attgcaatga      1380
     aaatctattc acgatttctg aatttttgtg tctcgccaga gacatgtttg cccggctcag      1440
     tggttgccga actaaggaac agcaattctt cgctctgtct gagctgatga ttaagtactt      1500
     ataccatggg tgatttaacc aagcttaata ttgtcaactg gaacagtagg tcaatcctac      1560
     caaagagaat tgaatttttc gattttctaa atcagcacca aattgatgtt gctaccgtaa      1620
     cagaaacttg gctatcacct aaaaattcgt ttcaccatcc tgaatatcac tgcattcgta      1680
     gtgacaggag atcaaataac aacgagcgag gtggtggtgt ccttattgct atcaaaaaag      1740
     gcataaagtt ttcacaattg gacctcacta caggagcaat agaaaccgtc gggatagaaa      1800
     tccaaaatgc agcgcaaccg atccacatta ttgccgcata ttttccaggt ggacacagag      1860
     gtacaagttg gaacacgttt agaagggaca ttgacaactt agtgagacgc cccgagcctt      1920
     tcttcgttgc gggcgacttt aatgcacgtc atcggcaatg gaactgtttg agagcgaaca      1980
     aagctggaaa cattttggcc tcccgcgcat cttcctctga tttcttcatt catgccccaa      2040
     gcgcgttcac atataatcct caaaacggtc gcaggccgtc aacgctagat ctggttcttt      2100
     ccaataactt ggttaatatg tcaacggtgt ctgttgttaa cgatttatca tcggatcacc      2160
     tgccgggtcg tttcgacata gatctaatcg caccagtaat cactgttact tccacatcac      2220
     gatgttacgc acgagctaac tggcaactgt acaagcgatt ggtgaatgag aaaatcgatc      2280
     taacggccgg tgtgataaac aacctcaatt gctccgcagc gatagacaac tccatcctac      2340
     ttctgaccac aactctcaag gaagcagaag caatagcagt tccaaatgtg ccaacgaaga      2400
     tgtataagga tgtcaaggtc tcaaattcta ctcgccagtt aattcagcta agaaacgtcc      2460
     gtcgtcgaca atggattcgc actcgtgatc ctctaatgtt gatgatagtt gaatcactca      2520
     ataaccggat tagggaggag tgcatgtcgg aaagaaatcg tcaattctct aggactatct      2580
     ccaatctgga aaacggtgca aaagatgtct ggaaaatcag caaagctctt cgtaaaactg      2640
     ttaaatatag tccaccactg catcaaattg acaccaacac tctaatatca tctccttctg      2700
     aaaaggcaaa cctcctcgca gaatgctttg ctagtactca tcgtaaccct ttaccaagcg      2760
     acgatcaaac agccattgct gttgaggaat cgtgtactct catcgctaat acggcaaccg      2820
     cggtaaacga tgttccaatg attcgtccca gagagatcga aaagatcatt aaatctatga      2880
     aacagaagaa agcacccgga aaggacaaaa tccggaacgc acttcttaag aatcttcctc      2940
     gaaaaggatt ggttatgctc accaaaatca tcaacgcatg cttgaggaac tcctactttc      3000
     caaaagtttg gaaacacgca gttgtcactg caattcctaa gccaggtaag gacataactc      3060
     ttcctgcgaa ctatcgtcct atcagtttgc tgcccagcat gagcaaaata cttgagcgag      3120
     tcattttgtc tcgaatcgaa ggacacctcg aaggtcacaa catcattcct gcgcaacagt      3180
     ttgggttcaa acgtggtcac tccacaagtc atcagctagt tcgtctcacc cagttcatta      3240
     aaactgcatt caccagtgga aagtcagctg gcatggtact tttggatgtg gaaaaagctt      3300
     acgattccgt ttggcaagat gcaattctgc acaaaatgag gactgccaac tttccactgt      3360
     acatcctgaa gcttctgcaa tctttcctta aagagcgtag cttccaagtc atcgtcaagg      3420
     gagagctgtc tcacgttcaa cagataccct atggtgttcc acaaggtgct gtgctgagcc      3480
     ctattttgta caatatcttc acgtcagaca tggtgatggt gaacggagtc gaatatttcc      3540
     tattcgctga cgacactggc tttgtggctg tcgacaaaaa agcagaggtg gtcatcgaaa      3600
     agctacagac agcccaaaaa gctattgagg attaccaacg gcaatggaga attaggataa      3660
     acccgtcgaa aactcaagct atcttcttca ctcgacgacg taatcaacgt ttcctaccac      3720
     aaacgcaatt aacagcaatg caccatactg ttccttggtc ggatgaggcc aaataccttg      3780
     gcctagtgat ggataaaaag cttaagtttg ataagcatat tgcaagcata ttggggaaat      3840
     gtgacaaact cattaaaatg ctttatcctc taatttgtcg tcgatcacga ctcaacagcg      3900
     tgaataaaat actaatatat aaaatgatat tccggcctat catcacatac ggctttccag      3960
     cttggcacag ctgcgctcag tctcgtcgca tgaaacttca agtcaagcag aacaagatct      4020
     tgaaaatgat gctggattta ccattcaact tttcatctga tgagctacaa gaagtatcac      4080
     acactgaaca cttgggttca tggaccacaa agctgctcca aaaattctgg actggatgca      4140
     caatttcgga aaacgatttg atcgtcaatt tggtgccata atttgtctgt gatatagttt      4200
     taagtaaata atccttcctc tttctgtccc atctctaaaa gtaatgattg caggtttttt      4260
     gctagtattt tcctgcagag ctgctcaaac gatattgtat aaattacgtc aaatgacaaa      4320
     ctgaattatg aaatagttgt aaggaaaacc aaaactctat tgttaatcta atgatacact      4380
     ttgtaaactg acaaaacaac aaatatacat gaattgaatt gaa                        4423
//
ID   Jockey_Ele5 repbase;    DNA;    INV; 4129 BP.
XX
AC   .
XX
DT   22-DEC-2010 (Rel. 16.01, Created)
DT   22-DEC-2010 (Rel. 16.01, Last updated, Version 3)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4129
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4129
RA   Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           87..1337
FT                 /product="Jockey_Ele5_1p"
FT                 /translation="MGRKRKVRNGKPADITASTPEQSXTRKKRQVDEISLQ
FT                 ETILSRNRYSTGGTAVNDSDLGDFGDVPDEQQQQQQRDPPGKIPPLMVKSV
FT                 GLSKLQATMKALNISAMYKLCRIGVKVILNCKEDYQKAKAYLVRSKAEFFS
FT                 FDMPSEKPFKAVIRGLCDMEPEAIKMELENRYKLKPLAVFPMNRHDRKRVY
FT                 RDALYLVHFKKGTVTLGALKAARAVNDVIITWEAYRGANRDVTQCMRCLHF
FT                 GHGARNCNVTPRCGVCTQQHETRDCPIEEVVDYKCANCGGNHRATDRTCEK
FT                 RAEYKRIRMQASSQNQPRRRMKEAPKFSEENFPPIPSQAGGRPSERQAGTD
FT                 TPPPGLSYRDRLCQRGTSIFQPQQSNAAPHDNSAPLLTPEQLLPIFHDMWQ
FT                 QMQQCRTRADQILCLGEFIIRHG"
FT   CDS           1193..3982
FT                 /product="Jockey_Ele5_2p"
FT                 /translation="MQRRTTTRLHCSRLSNFCPSSTICGSKCNSVAPVRTK
FT                 SSAWENSSSAMANGLKVLLWNAHSVKPKDVELLDLAEREEAQVITITETHL
FT                 KPGVNFCLPGYNTVRLDRTATNGGGVAIAVKQPIKFVIQPDYRTSVIEAVG
FT                 VEIATPDGPLLVIAAYCPQQCYEGSGKARQFKNDLVKLTRHRKKFIVACDL
FT                 NAKHEAWGNHRRNRNGNLLFDESQLGYFVVNAPKDPTFLSPAGIPACLDFF
FT                 LTNMEVPLPTTINELSSDHLPVLLRVGGDAEREQRRTRKDYHRVNWVVFQR
FT                 KVDSRVDAEVQLDTVEDIDLAVENLQAAIVAAESECVPRVQIVSSQLQFDP
FT                 ELRSIMRARNVFRRQFQRTGDLSKKSQANYLTKIIALRVQEMRNDRFERDV
FT                 RRMDPFSRPFWKVAKILKSKPQQIPPLKCDENLLVSPLEKANAIASSFSKN
FT                 HLIGSHLVSPMEQAVSDTLLTLNNTPCYVPDNKKISVEEVSAAIKGAKNMK
FT                 APGFDTLFNLVLKNLSVSALSHIANIFNRCLDLNYFPNCWKLAKVVPILKP
FT                 GKDPTSPKSYRPISLLSALSKLFEKVILNRVLDHVNNNNILLQEQFGFRKG
FT                 HSTSHQLYRVTNIINKNKSVAKSTVMGLLDVEKAFDNVWHDGLVYKLYRYN
FT                 FPNYLIKIIQHYLKDRQFRVALSGELSDSLQIPAGVPQGSLLGPILYSIYT
FT                 SDVPQLPDGCYLSLFADDTAIMVKGRNTRTTVKKLQECLNSFQQYASLWKI
FT                 KLNAAKTQVIVFPYNRSPKLLPPDDCKIVMDGVSIDWSTDVLYLGLTIDQK
FT                 LLFRSHVEKTKTKCNKIVKALYPLINRRSKLCLKNKIAIFKQIISPVIDYA
FT                 MPVWQSTAMSHRKTLQIVQNKALKMILNVPYHTKNTEVHDIAGVQMLDQKI
FT                 IANFDKFKAKCQQSEYAMINTLFQQN"
XX
SQ   Sequence 4129 BP; 1222 A; 1036 C; 964 G; 904 T; 3 other;
     cagtttactt tcgccccttg agggtatcgg acgtttttcg agagcgcggt ttaatatcgt        60
     wgttagttcg cggcttgcaa cccagtatgg gacgcaagcg aaaggttcgg aacggaaagc       120
     cggccgacat cacggccagc acaccggagc agtccwacac gaggaagaag cgtcaagttg       180
     acgaaatctc tcttcaggag acaatcctgt cgcgaaatcg gtacagcact ggmggaacgg       240
     ctgtcaacga tagcgactta ggcgactttg gcgacgtgcc ggatgagcag cagcaacaac       300
     agcagcgcga tccgcctgga aaaatccctc cgctgatggt aaagtccgtc ggcctcagca       360
     aactgcaagc caccatgaag gcgctcaaca tcagtgcgat gtacaagcta tgtcgcattg       420
     gagtcaaagt gatcctcaac tgcaaggaag actaccaaaa agccaaggcc tacctggtga       480
     ggagcaaagc cgaattcttc agcttcgaca tgccttcgga aaaaccattc aaggctgtca       540
     tccgtggtct ctgtgacatg gaaccagagg ccatcaagat ggaattggaa aaccgctaca       600
     aactcaagcc attagcggta tttccaatga atcgccacga caggaagaga gtgtatcgag       660
     atgccctgta cctcgtgcac ttcaagaaag gaacagtgac ccttggagct ctgaaggcag       720
     ctagagcagt caacgacgtc atcatcacct gggaggcata ccgtggagcg aatcgagacg       780
     ttactcagtg tatgcgctgc ctgcatttcg gtcacggagc aagaaattgc aatgtgacgc       840
     cgaggtgtgg tgtctgcact cagcaacacg agaccagaga ctgccccatc gaagaggtgg       900
     ttgactacaa gtgtgccaat tgtggcggta accatcgagc gaccgatcgc acctgtgaaa       960
     aacgagcgga atacaagcgg atccgaatgc aagcttcaag ccaaaaccag ccaagacgcc      1020
     ggatgaagga ggcgccgaaa ttcagcgagg agaacttccc cccaatccca tcgcaagccg      1080
     ggggcaggcc atccgaacgt caagcaggca cggatactcc tccgccgggt ttgtcctatc      1140
     gggatcgact ttgccagcgt ggaacatcta tcttccagcc tcagcagagc aatgcagcgc      1200
     cgcacgacaa ctcggctcca ttgctcacgc ctgagcaact tctgcccatc ttccacgata      1260
     tgtggcagca aatgcaacag tgtcgcaccc gtgcggacca aatcctctgc ttgggagaat      1320
     tcatcatccg ccatggctaa tggtctgaag gtactgctct ggaacgccca ctccgttaaa      1380
     cccaaggatg tggaattact cgacctcgcg gagagagaag aagcgcaagt aatcaccatc      1440
     accgaaaccc atctgaagcc cggcgtcaac ttctgccttc cgggatacaa cacagtgcgg      1500
     cttgacagaa cggctaccaa tggaggtgga gtggccattg ctgttaagca gccgatcaaa      1560
     ttcgtgatcc agcccgacta caggacatcg gtcatcgagg cagttggggt agaaatagct      1620
     actccagatg gacccctgct ggtaattgcc gcctactgcc cgcagcagtg ctatgaagga      1680
     tcaggtaagg caaggcagtt caagaatgat cttgtaaagc tgaccagaca tcgcaagaag      1740
     ttcatcgtgg catgcgacct aaatgccaaa cacgaggcgt ggggaaatca tcgccgcaac      1800
     aggaacggaa accttctatt cgacgagtcc caactggggt acttcgtggt gaacgctccg      1860
     aaggacccga cattcctgtc gccggccggc atcccagcct gcctggactt cttcctgacc      1920
     aacatggagg tcccactacc gacaaccatc aacgaactga gctccgacca cttgcctgtc      1980
     ctgctaaggg ttggtggtga cgctgaacga gagcaacgcc gaacgaggaa ggactaccac      2040
     cgggtgaact gggtggtgtt tcaacgaaaa gtcgattcca gagtcgacgc agaagtgcaa      2100
     ctggacaccg ttgaagacat cgacctggcg gtagaaaacc tgcaagcggc catcgtagca      2160
     gccgagagcg agtgcgtccc acgagtgcaa atcgtaagta gccaactaca gttcgaccct      2220
     gaactccgca gtataatgcg agctaggaat gtgtttagga ggcagttcca gcgtactgga      2280
     gatttgtcaa aaaagtctca agcaaattac ttgaccaaaa ttattgcttt gcgagttcag      2340
     gaaatgagga acgacaggtt tgagcgagat gtcaggagaa tggatccgtt ttcaaggccg      2400
     ttctggaagg tagccaaaat cttaaaatca aaaccccaac agattccccc cctcaagtgt      2460
     gatgaaaact tactggtgtc tccgttagag aaggcaaatg ccattgcatc tagcttcagc      2520
     aaaaatcatc tgataggtag ccatttggtt agtccaatgg agcaagcagt ctcagataca      2580
     ctcctcactt tgaataacac cccctgttac gtccctgaca acaagaaaat ctcggtcgaa      2640
     gaagtctctg cagccattaa aggtgctaaa aatatgaaag cccctggctt tgatacactc      2700
     tttaacctgg ttctcaaaaa ccttagtgtg tccgctctgt cccacattgc caacatcttc      2760
     aacagatgcc tagatttgaa ctacttcccg aattgttgga agttggcaaa agtggtacca      2820
     atactgaaac caggaaaaga tcccaccagt ccaaagagct acaggccaat tagtctgctg      2880
     tcggctctca gtaagctgtt tgaaaaagtg attctaaatc gagtattaga tcacgtaaac      2940
     aacaacaaca tcctcctaca ggagcagttc ggcttccgta agggtcactc gacgtctcat      3000
     cagctgtatc gcgtaaccaa tatcattaac aaaaacaaat ccgtcgctaa gtccaccgtc      3060
     atgggtcttc tcgatgtaga gaaggccttt gacaatgtgt ggcacgacgg gcttgtttac      3120
     aagctctacc gttataattt cccgaactat ctaatcaaga taatccaaca ctatctgaaa      3180
     gatcgacagt ttcgagtggc ccttagtggt gaactttcgg acagcttaca aatcccagcc      3240
     ggagtgccgc agggtagcct actcggtcca atactctata gtatttacac atcagatgtg      3300
     ccgcaacttc ccgatggatg ttacctgtct ctctttgccg acgatactgc cattatggtt      3360
     aagggacgta acaccagaac cacagtcaaa aaactacaag aatgcttgaa ctcctttcaa      3420
     cagtatgcat ccctgtggaa aataaagctg aatgcagcca aaacccaggt gatagttttc      3480
     ccatacaatc gctccccaaa gttactccct cccgatgact gcaaaattgt tatggatggt      3540
     gtttccatcg actggtccac cgatgtcttg tatctgggac tcactattga ccagaagctc      3600
     ctcttccgat cccatgtaga gaaaacaaag accaaatgca acaaaattgt aaaagcacta      3660
     tatcccttga taaatcgcag atcaaaatta tgtctcaaga acaaaatagc aatattcaaa      3720
     cagattatat caccagtaat agattatgct atgcccgtct ggcaatcaac tgcaatgtcc      3780
     catagaaaaa cactacaaat tgttcaaaat aaggctctta aaatgatatt aaatgttcca      3840
     taccatacta agaatactga agtgcatgat attgcaggtg ttcaaatgct ggatcaaaaa      3900
     ataatagcca attttgataa attcaaagca aagtgtcaac agtcagaata tgcaatgata      3960
     aatacgctgt ttcagcaaaa ttaggttagg attgtagtta ggattagttt gtaagtattt      4020
     gtaaggaaaa attataacat ttgctaagag cggaaaactc taaactatta taagaaacaa      4080
     cacttttgtg gaagaagatc aaagctgaaa tgccatgagc agcatcact                  4129
//
ID   Jockey_Ele7 repbase;    DNA;    INV; 4980 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4980
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4980
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >95% identity, and ~97% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           529..1785
FT                 /product="Jockey_Ele7_1p"
FT                 /translation="MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANP
FT                 AAYNSRLLASNQFASLPVDQVPQKAKVAPLFAATTDIAALRTELAALNIKP
FT                 LFKLCHTGTKVMCDSRNDYEKAGKLLKAKGLEFYTHDAPGSKPLKVIIRGL
FT                 PEYTPEAIIEEMVSAGLKPTSVFPIRRAQGGRHRDQLYLAHLEKGSTTMAG
FT                 LTRVRALFHIVVEWERYRPKKRDVTQCGNCLALGHGTRNCHMKPRCGKCAG
FT                 AHATTTCQPMEGTEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGR
FT                 QRQRQPPPPLTEEHFPTPRYQVPNLPPLQPTHRQASRQSAPSVQQRLAAAA
FT                 AAPSVRNAPPPGWGNPGPSASGTPPPSDDDGSLYTPEQMLEYTRNLFQRLR
FT                 ACRSKSEQIDAANSVVFAFLSKYGP"
FT   CDS           1577..4447
FT                 /product="Jockey_Ele7_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRPLLDGGILDPVLPALLLPPTTTAPCTRRSKCWNTQ
FT                 GTFSNGYEPAVPSRNRSTPPTRWYLRSYPNMAREAITRIANWNACSLRNKA
FT                 IELVEFLEEKTIDIAIITETHLKPELSVSIPNYRLVRLDRTDSEGGGVAIA
FT                 LRHNMNCRLLPSLQLKLIEAVGVEVQASDGPITIIAAYYPTQASLNDGSAT
FT                 ALRQDITKLTRRHGRYIIAGDLNAKHEAWGNPRRNRNGVILQQGLEEGHFN
FT                 ILGPDTPTRLSRSGAHAFIDLFITNMVSISHPVVYQELSSDHYPVVVEVGS
FT                 SVNRHLKTRRNYRRVNWDQFRQCVDTHVDYEVRPESTDDVDRQLQAIEEAI
FT                 SQAREQHVPATSQVSNNIPIDRLTKDLIRLRNTIRRQYQRTGLPALKSDVN
FT                 RMNKIIKARMLDLRNQNFSNKIRALPDCAQPFWKLTKILKTKPRPIPPLVP
FT                 QDNNSPVDRLITPAEKAAEIGRHFVSSHNLGHNIISPHEAAVNEHANNHHL
FT                 IPNDFSEELEITADELSTYLKHSKNMKAPGFDNIMNLELKHLSVQFYDHLA
FT                 VIFNQCLRLSYFPSSWKSAKVVPIRKPGKDPSSPKSYRPISLLSALSKLFE
FT                 RAVYRRLLASVEQNNILLDEQFGFRRGRSTVHQLSRVTNILRRNKSLSKTS
FT                 AMALLDVEKAFDNVWHDGLVFKLQRYNLPSYLVKIVHNYLSARTFRVSLNG
FT                 AISDAHDIIAGVPQGSILGPLLFNLFTSDMPALPGGGALSLFADDTSIVYS
FT                 GRRIRALTAKLQRGLDVLTEYLTSWKICINAAKTQVILFPHSRSPRLVPAE
FT                 DCKITLNGTAVEWSNEADYLGLTLDSKLIFRQQVDKTVTRCSTMLRMLYPL
FT                 TNRRSTLSQKNKLAVYKQIIRPVIEYGIPVWESCAKSHHLKLQRVQNKFLR
FT                 MALNAPRRMRNSEVLRLAEIQTLEDRFSESIGRYRARCRTSDQQVVRAIVA
FT                 PP"
XX
SQ   Sequence 4980 BP; 1282 A; 1476 C; 1197 G; 1020 T; 5 other;
     ttaaagagtt gtttgtgtaa tattccctaa tgtgtttacc acatacttgc tataatctct        60
     taatwcatct catagcatca tacaataatt gatttattac gaataattga caatacggma       120
     atttgaggat gtttccgagg acgctgctgc agtgccgtcg ggatgcaata acagcatgat       180
     gctwatcttg tacatccctt acccagacat cagtttcata tagcctattt cccagataag       240
     aaaacgaaga atttgaaagg aggagcatca cctgctattc taagggtata aagcatccct       300
     ccttcgttga attcggtttc atcaacattc cgaatcgaac tgccgttgtg aacggttgcg       360
     tgttcttttt gagttgcgag acacaagttc gaattctccc ccgttcgtgt gcgaagtgca       420
     cttttcgcga tttcccgctc ccgcgactgc tctccggcgc taacctacct ccttggggtg       480
     gctagccaga aggcatctct gcaagcagag caaccgcggc ccatagcgat gggtcgcaac       540
     agaaagcaaa aggcggactc cgcctcgatc cccgccccgc tggccgacag cgggcagacc       600
     agcgccccga agcgwgcccg caatgaagat gccaacccgg cggcttacaa cagcaggttg       660
     ctggcaagca atcagtttgc atccctgccg gtggaccaag tcccccagaa ggcgaaggtt       720
     gcccccctgt tcgcggcaac gacggacatc gcggcactgc ggacggaact ggcggccctc       780
     aacatcaagc cgctattcaa gctgtgccat accggcacga aggtcatgtg cgactcccgc       840
     aatgactacg agaaggccgg caagctgctg aaggcaaagg ggttggagtt ctacactcac       900
     gatgcccccg gtagcaagcc gctgaaggtc atcattcgtg ggcttccgga atacaccccg       960
     gaggctatca tcgaggagat ggtgtcggcc ggactcaagc cgacgagtgt gttccccatc      1020
     cggcgagcgc aaggaggacg acaccgggac cagctctacc tggcccattt ggagaaaggg      1080
     tccaccacca tggcgggcct gacgagggtg agagcgctct tccacatcgt ggtggaatgg      1140
     gagcgctacc gcccgaagaa gcgagacgtg acgcagtgtg gcaactgcct cgcgctcggg      1200
     catgggacca ggaattgcca tatgaagccc cgctgtggca aatgtgccgg tgcgcacgcc      1260
     actacgacct gccagccgat ggagggcacc gaaccgaagt gtgccaactg cggtgcaaac      1320
     cacgagggca gcagccgcaa ctgccccaaa cgtgcggagt ttctggcaat ccgccagcaa      1380
     gcgtccgcca agaagctggg acggcaacgc cagcgccaac cacccccacc gctgactgag      1440
     gagcacttcc cgacgccccg ctaccaagtg cccaatctgc caccgcttca accaacccac      1500
     cggcaggcat cccgccagtc ggccccctcc gttcagcaac gcctcgcggc cgccgccgct      1560
     gctccatcgg tccggaatgc gccccctcct ggatggggga atcctggacc cagtgcttcc      1620
     ggcactcctc ctccctccga cgacgacggc tccctgtaca cgccggagca aatgttggaa      1680
     tacacaagga accttttcca acggctacga gcctgccgtt ccaagtcgga acagatcgac      1740
     gccgccaact cggtggtatt tgcgttccta tccaaatatg gcccgtgagg ccatcaccag      1800
     gatcgcaaat tggaacgctt gttccctccg gaacaaagct atcgagctcg tcgaatttct      1860
     cgaagagaaa accatcgaca tcgccatcat cacggagacg cacctcaagc ctgagctgag      1920
     cgtctccatt cccaactatc gacttgtgcg gctagatcgg accgactctg aaggaggggg      1980
     agtcgccatc gctttgcgcc acaacatgaa ctgccgcctg ctgccgagcc tgcagctcaa      2040
     gctcatcgag gccgtaggag tagaagtgca agcttcggac ggcccgatca ccatcatcgc      2100
     tgcatactac ccaacgcaag cgagcctcaa cgacgggtcg gcaacggccc tgcgacaaga      2160
     catcaccaag ctcactcggc ggcacgggcg gtacatcatc gctggcgacc tcaacgcgaa      2220
     gcacgaagcc tgggggaacc cccgaagaaa tcggaacgga gtcatcctgc agcaaggctt      2280
     ggaggagggc cacttcaaca tcttgggccc ggatactccc acccggttga gcagatcggg      2340
     agcccacgcc ttcatcgacc tgtttatcac caacatggta agcatctctc atccggtcgt      2400
     ctaccaggaa ctcagctcgg accactatcc ggtggtggtg gaagttgggt cctcggtcaa      2460
     ccggcatctc aagacccggc gcaactatcg acgcgtcaac tgggaccagt tccggcagtg      2520
     tgtcgacacc cacgtcgact acgaggtgcg acccgagtca accgatgacg tcgatcggca      2580
     gctgcaggcc atcgaagaag cgatctccca ggccagggag caacacgtgc cggcaaccag      2640
     tcaggtgagc aataacatac caattgatag acttactaaa gatttgatca gacttcgcaa      2700
     caccatccgc aggcagtacc agcgaactgg gctgcctgcc cttaaatccg atgtcaatcg      2760
     gatgaacaaa attatcaagg ccagaatgtt ggacctcaga aatcaaaatt tttcaaacaa      2820
     aatccgcgct ctcccagact gtgctcagcc gttctggaag ctcacaaaaa ttttaaaaac      2880
     caagcctaga ccaattccac cgctggttcc acaagataac aatagccccg tagatcgctt      2940
     gataacgcct gctgagaagg cagccgaaat aggtcgacat ttcgtcagct cacataatct      3000
     tggacacaat atcatcagtc cgcatgaagc tgccgtgaat gagcatgcaa acaaccacca      3060
     tctgattccc aacgacttct cggaggagtt ggaaatcaca gctgacgaac tctcgaccta      3120
     tttaaaacac tccaaaaaca tgaaggcccc aggtttcgac aacatcatga acttggaact      3180
     caagcactta agcgtccagt tctatgatca cctcgcagtg atcttcaacc agtgcctccg      3240
     gcttagctac ttcccatcgt cctggaagtc agccaaagtc gtccccatca ggaaacctgg      3300
     gaaagatcct tcctcgccta aaagctatcg ccccatcagc cttctctcag cgttatcgaa      3360
     gcttttcgaa agggcagttt atcgccgact tcttgcttcc gtagagcaaa acaacatcct      3420
     gctcgatgaa cagtttggtt ttcgacgcgg tcgttcaacc gtgcaccaac tgtcccgagt      3480
     caccaacatc ctcagacgga acaagtctct atccaaaacc tctgccatgg ccctgctcga      3540
     cgtcgaaaaa gcgttcgaca atgtctggca tgatggcctg gtgttcaagc ttcaacgata      3600
     taatcttccc agctacctgg tgaaaatagt acacaactat ctgtcggcga ggacattccg      3660
     ggtctcacta aacggagcaa tttccgatgc gcacgacatc atcgcaggcg tcccccaggg      3720
     cagtatcctc gggcccctgc tattcaacct gttcacctcc gatatgcccg cactcccagg      3780
     aggcggcgca ctgtctctgt tcgcagatga cacctccatc gtctacagtg gtagaagaat      3840
     cagagcgctc acggcaaaac tccaacgggg cctggatgtc ctgacagaat acctcaccag      3900
     ctggaagata tgtattaacg cggcgaagac ccaggtcatc ctcttccccc actccagatc      3960
     ccccagactt gttccggctg aggattgcaa aatcacccta aacggcacag cggtggaatg      4020
     gtccaacgag gccgattatc taggcttgac tttggacagc aagctgatct ttcgacaaca      4080
     agtcgacaaa acggtcacga ggtgcagcac gatgctgcga atgttgtatc ccctcacaaa      4140
     ccgtaggtcg acactgtccc aaaagaacaa gcttgctgtc tacaaacaaa ttatccgtcc      4200
     cgtgatcgag tacggcatac cggtctggga gagctgcgct aaatcacacc atctcaaact      4260
     ccagagggtt cagaacaagt tcctkagaat ggcactgaac gccccaagga gaatgcgaaa      4320
     ctctgaggtc ctccgtctgg ccgagataca aacccttgaa gatcgcttta gtgagtctat      4380
     cggaaggtac agggctcgtt gccgcacgtc agaccagcag gtcgtccgcg ctatagtcgc      4440
     acccccctag gttatcaaat tttgttttgc ttgtgtatat agtagttagg ttatcaaatt      4500
     tttaataatc accagagctc caaagagcca aattgtcaaa ctagaataat caaatttaaa      4560
     ttccacaaca ccatatcaaa acgaccaaga ttgaaaggcc cttggccgac caatttagat      4620
     gtaagaataa ttgtaccccc cccaaatcaa acatgaaaat aaatatgaat taaatcgaaa      4680
     aatgaattcg gtttcattct gttttcgctt tcgagctggt aagagctcct ccaaacctgc      4740
     tcagctcctc gctaccagag gcaagctgtt tgtacgagat ggctgaagaa aatcgaccaa      4800
     agccgcttgt tgaagcgcac atcgtcgtca gcaccgcaaa tctcatcggg cgaggaggat      4860
     tgcaaccagt gcgccgtcaa aatgtgtccg tgttacgcaa attcaacaat tcaatcggcc      4920
     cttttcagag ccaacaaatg tgttttaaag agttgattgt gtaatattcc ctaatttgtt      4980
//
ID   Jockey_Ele8 repbase;    DNA;    INV; 4364 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Jockey clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Jockey_Ele8.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4364
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4364
RA   Kojima K.K. and Jurka J.;
RT   "Jockey clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 22
CC   sequences with >95% identity, and ~99% identical to the original
CC   sequence in [1]. The consensus is ~81% identical to Jockey_Ele7.
XX
FH   Key           Location/Qualifiers
FT   CDS           205..1455
FT                 /product="Jockey_Ele8_1p"
FT                 /translation="MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANP
FT                 AAYSRLLANNQFASLPVDQAPPGAKVPPLFTASKDLSALRSELAANNIRPL
FT                 FKLCHTGTKIMCASGADYDKAGKLLKAKGVEFYTHDAPGSKPLKVLVRGLP
FT                 EFTPEAIVDEMKAAGLKPTNVFPIRRAQGGRHRDQLYLAHLEKGSTTMAGL
FT                 TRVRALFNIVVEWERYRPKKRDVTQCGNCLAFGHGTRNCHMKPRCGKCAGA
FT                 HATTTCQPMEEGIEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGR
FT                 QRQRQPPPPLTEEHFPTPRYQVPNLPPLQPTHRQASRQPAPSVQHRLAAAA
FT                 AAPPVQNAPPPGWGNPGRSAPGTPPSDDGSLYTPEQMLEYTRDLFQRLRAC
FT                 RSKSEQINAANSVVFAFLAKYGP"
FT   CDS           1253..4117
FT                 /product="Jockey_Ele8_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRPLLDGGILDAVPPALLPPTTAPCTLRSKCWSTPGT
FT                 CSNGCAPAVPSRSRSTPPTRWYSPFSPNMAREATTKILNWNACSLRSKNRE
FT                 LSAFLDQEGIDIAVITETHLKPEVNIFIPDFRLVRLDRCGSEGGGVAVALR
FT                 RNVNCTLLPSFQLQVIEAVGVRVETSIGPITIIAAYCPKQTNINDGTSAAL
FT                 KQDIVKLTRRQGQFILAGDLNARHETWGNPRRNRNGLILQQDLEEGHYTIL
FT                 SPDSPTRLSRSGAHATIDIFLTNMADNISQPVVHQDLSSDHYPVVAEVGSL
FT                 VNRHRVTRRNYHRVDWGQFQRCVDANIQYEAPLASAEDIDRHLQSVEEAIS
FT                 VAREQHVPASGQVSNTLFIDRVTKDLIRLRNTKRRQYQRSGLPALKSEVNR
FT                 ISKIIKARMVDLRNDDFSNKIRSLPDCARPFWKMTKLLKSKPRPIPPLIPL
FT                 DNTDSKDRLITPAEKAAEIGRHFVSSHNLGLDIPSPHEAAVSEHAANLHRS
FT                 PNDFSEELEITADELLAYLKTSKNMKAPGFDNILNLELKQLSLQFYQHLAL
FT                 IFNQCLRLSYFPSSWKSAKVIPIKKPGKDPSSPKSYRPISLLSGLSKLFEK
FT                 AINRRLLSAADQNNILLEEQFGFRRGRSTVHQLTRVTNILRRNKSLAKSSA
FT                 MALLDVEKAFDNVWHDGLVYKLHRYNLPTYLVKIIKNYLFNRTFRVSLNGV
FT                 NSDPHNIPAGVPQGSILGPLLYNLFTSDMPQLPEGGSLSLFADDTSVVYSG
FT                 RFTRALTSRLQRGLNVLSDYLNSWKICINAAKTQVILFPYSKSPRLVPAED
FT                 CKITLGGSTVEWSDAADYLGLTLDSKLLFRQQVDKTVTKSNILLKALYPLI
FT                 NRKSTLSLKNKLAVYKQVILPVIEYGVPIWESCAKTHHLRLQRTQNKFLRM
FT                 ILNSPPRTRTTEVHRLAEIKTLEERFGDSIGRFRARCHQSGQQVIRDLVPP
FT                 "
XX
SQ   Sequence 4364 BP; 1096 A; 1347 C; 1073 G; 847 T; 1 other;
     catcattccg aatcgaactg ccgttgtgaa cggttgcgtg tctttttgag ttgcgagcac        60
     aagttcgaat tctcccccgt tcgtgtgcga agtgctcttt tcgcgatttc ccgctcccgc       120
     gactgctctc cggcgctaac ctacctcctt ggggtggcta gccaaaaggc atctctgcaa       180
     gcagagcaac cgcggcccat agcgatgggt cgcaacagga agcaaaaggc ggactccgcc       240
     tcgatccccg ccccgctggc cgacagtggg cagaccagcg cgccgaaacg cgcaagaaat       300
     gaggatgcca acccggcggc gtacagcagg ttgctggcaa acaaccagtt tgcctccctg       360
     cctgtggacc aagccccccc gggcgcgaag gttccccccc tcttcacggc gtcgaaggac       420
     ctctcggcgc tgcgatccga gctagcggcc aacaacatcc ggccgctgtt caagctgtgc       480
     cataccggca ctaagatcat gtgcgcctcc ggcgccgatt acgacaaggc cggcaagctg       540
     ctgaaggcaa aaggggtgga attctacacc cacgatgccc ccggcagcaa gccgttgaaa       600
     gttctcgtcc gagggctgcc ggagttcacc ccggaggcaa tcgtggacga aatgaaggcg       660
     gctggactca agccgacgaa tgtgttcccc atccggagag cacaaggagg acgacatcgg       720
     gaccagctct acctggccca cttggagaag gggtccacca ccatggcggg actgacgagg       780
     gtgagagcgc tcttcaacat cgtggttgaa tgggagcgct accgcccgaa gaaacgtgac       840
     gtgacgcagt gtggcaactg cctcgcgttc ggccacggga cgaggaactg ccacatgaag       900
     cctcgctgtg gcaaatgtgc cggcgcgcac gccacgacga catgccagcc aatggaggag       960
     ggcatcgagc cgaagtgcgc caactgtggc gccaaccacg agggcagcag ccgcaactgc      1020
     cccaaacgtg cggagtttct ggcaatccgc cagcaagcgt ccgccaagaa gctgggacgg      1080
     caacgccagc gccaaccacc cccaccgctg actgaggagc acttcccgac gccccgctac      1140
     caagtgccca atctgccacc gcttcaacca acccaccggc aggcatcccg ccagccggcc      1200
     ccttccgttc agcatcgcct cgcggccgcc gccgccgccc caccggtgca gaatgcgccc      1260
     cctcctggat gggggaatcc tggacgcagt gcccccggca ctcctccctc cgacgacggc      1320
     tccctgtaca ctccggagca aatgttggag tacaccaggg acttgttcca acggctgcgc      1380
     gcctgccgtt ccaagtcgga gcagatcaac gccgccaact cggtggtatt cgcctttctc      1440
     gccaaatatg gcccgtgagg ccaccaccaa gatcctcaac tggaacgctt gctccctccg      1500
     gagcaaaaac cgagagttgt ccgccttcct ggaccaggaa ggcatcgaca tagccgtgat      1560
     cacggagacg cacctcaagc cggaagttaa catcttcatc cccgacttcc ggctcgtgcg      1620
     gcttgaccgg tgcggatccg aaggtggagg cgttgcggtt gctctgcgga ggaacgtaaa      1680
     ctgcaccctg ctgccgagct tccaactaca agtcatcgag gccgtaggtg ttcgggtgga      1740
     aacctccatc ggcccaatca cgatcatcgc ggcgtactgc ccgaagcaaa ccaacatcaa      1800
     cgacggaaca tcggcggccc taaagcaaga catcgtcaaa ctgacacggc ggcaggggca      1860
     gttcatcctg gctggcgatc tgaacgcaag gcacgagacc tggggaaacc cccggcgaaa      1920
     taggaacggc ctcatcctac aacaggacct ggaggaaggc cactacacca tcctgagccc      1980
     ggattcaccc acccgcctga gccggtccgg ggcccatgcg accattgata tcttcctgac      2040
     caacatggcc gacaacatct cccaaccggt cgttcaccag gacctgagct cggaccacta      2100
     cccggtggtg gcagaagttg gttccctggt caaccggcat cgggtcaccc ggcgcaacta      2160
     ccaccgtgtc gactggggcc aattccagcg gtgtgtcgac gctaacatcc agtacgaggc      2220
     tcccctggcg tccgctgaag acatcgaccg gcacctgcag agcgtcgaag aggccatctc      2280
     cgtggcccga gaacagcatg taccagcatc tggtcaggtg agcaacaccc tttttatcga      2340
     tcgtgttacc aaagatctca ttcgtttaag gaacaccaaa cgcaggcagt accaacgctc      2400
     tggtctgcct gcgttgaaaa gcgaagtcaa tcgcatatcc aaaataatca aggccagaat      2460
     ggtggacctc aggaacgatg atttttccaa caagatccgc tctctcccag attgtgctag      2520
     gccattctgg aagatgacca aacttttgaa atccaaaccc agacctattc caccgttgat      2580
     cccattagac aacaccgact ctaaggatcg cttgataacc cctgcggaga aggctgctga      2640
     gataggtcgg catttcgtca gctcccacaa tctagggcta gacattccta gcccacacga      2700
     agctgctgtt tccgaacacg cagctaacct acaccgatct cccaacgact tctcggagga      2760
     gttggagatc actgctgacg agttgctggc ctatctcaaa acatccaaaa acatgaaggc      2820
     cccaggtttc gacaacatcc tgaacttgga gctcaagcaa ttgagtctcc agttctacca      2880
     acatctggca ctgattttca atcagtgcct ccgacttagc tacttcccct cgtcgtggaa      2940
     gtcagcaaaa gtcatcccca ttaagaaacc tgggaaggat ccttcctccc ccaaaagcta      3000
     tcgacccatc agccttctct cagggttatc aaagcttttt gaaaaagcga tcaacagacg      3060
     gctgctttcg gcagccgatc aaaacaacat cttgctcgag gaacagtttg gctttcgacg      3120
     cggtcgttca accgtgcacc aactgactcg agtaaccaac atcctcaggc ggaacaagtc      3180
     ccttgccaaa tcctccgcca tggcgttgct cgatgttgaa aaagcattcg acaacgtctg      3240
     gcacgacggc ctggtgtaca agctgcaccg atacaatctt cccacctatt tggtgaaaat      3300
     catcaaaaac tatctgttta acaggacgtt cagggtttcc ctcaatggag tcaactcaga      3360
     ccctcacaac atccccgcag gtgttccaca gggcagtatt ttaggtcccc tactatacaa      3420
     cctgttcacc tcggacatgc ctcagctccc tgaaggcggc tctctgtcac tgttcgctga      3480
     cgacacatca gtcgtctaca gcggcagatt cacgagagca ctaacatctc gactccagag      3540
     aggcctgaac gtcttgtcag attatttgaa cagctggaag atctgtatca acgcagcgaa      3600
     gacccaggtc atcctcttcc cctattccaa atcccccaga cttgttccgg ctgaggattg      3660
     taaaatcacc ctcggtggat caacggtgga atggtctgat gcagccgact accttgggct      3720
     aacgttagac agcaagcttc tcttcagaca gcaggttgac aaaacggtca ctaaaagcaa      3780
     catcttgctc aaagcattgt accccctgat caaccggaag tcaactctgt ctctgaagaa      3840
     caagcttgct gtttacaaac aggtcattct tccagtaatt gaatatggcg ttccaatctg      3900
     ggagagttgc gctaaaaccc accatctgag gctccagagg acccaaaata agttcctccg      3960
     gatgatcctc aacagtcctc cgagaacgag gacaaccgag gtccaccgtc tggccgagat      4020
     caaaacwtta gaggagcgct ttggtgactc gatcggaaga ttcagggctc gttgccacca      4080
     atctggccag caggtcatcc gggacctcgt tcccccctag gttatcaaat ttttcttgta      4140
     gtgtaaatag ttagttaggt tatcaaattc tctttttata aaaactacca gagcccataa      4200
     ggccaagaaa aactagggta aaaccacaaa attaaaccag ccaaacaaaa accattacaa      4260
     acaaagttga aggacccctt cggggtcaaa ctcttaacat gtaaaaatat tttgtaccaa      4320
     aaatccaaat gaaaaataaa catgaattta atgaaatgaa atga                       4364
//
ID   KABUKI_BM   repbase;    DNA;    INV; 1165 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   17-NOV-2004 (Rel. 9.10, Last updated, Version 1)
XX
DE   Bombyx mori gypsy-Ty3-like retrotransposon Kabuki gene for
DE   protease-like protein, partial cds.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; KABUKI_BM;
KW   protease-like protein; putative ty3-like retrotransposon.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Abe H., Ohbayashi F., Shimada T., Sugasaki T., Kawai S., Mita K.
RA   and Oshiki T.;
RT   "Molecular structure of a novel gypsy-Ty3-like retrotransposon
RT   (Kabuki) and nested retrotransposable elements on the W
RT   chromosome of the silkworm Bombyx mori.";
RL   Mol. Gen. Genet 263(6), 916-924 (2000).
XX
RN   [2]
RA   Gentles A. and Jurka J.;
RT   "Kabuki retrotransposon, partial sequence.";
RL   Direct Submission to Repbase Update (OCT-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1165 BP; 374 A; 243 C; 255 G; 293 T; 0 other;
     caactcaact agcattgtcg cagacttcag cggacattat ggcgatctcg ctatcgacac        60
     gtataccaga attttggaca gagcaaccaa gagcatggta cattaggatc gagtctatac       120
     tcgccccaca gaaacttggg gatgaagtta aatttgacat tgtcgtatcg aaattaccaa       180
     aagaagtcat tattcaacta acggattttc tagctaagcc accggacaca ggaaaatttc       240
     tggcgttaaa aacgaaatta ttatcaacat ttgaggagtc caaaagtcga caaattgaaa       300
     gactcatagg agagatggaa ctaggagatc aaaaaccttc tcagctattg cgccgcatga       360
     gagagttagc cagagataaa gtaccggacg acaccctgcg agtgttatgg caaggtcact       420
     tacctacaac attgagggca atccttacag tcactgaaac aaaagattta gacaacctcg       480
     ccatgattgc ggataatgtt gcggaggcca cgcgagttaa ccacatctct gaggtcgtta       540
     atcagcaaac ctcgaatatg gaacgaccat caacaagcga cacgtcttta attttagcgg       600
     aaatagcaaa attaagcgtc agaatgacta acatggagca gtcacgatcc agacaaaact       660
     actttgatcg taaccgtgat agaagtggct cacgatcttc atcaagacgc cgtaccccac       720
     agaaccccaa ctggttatgt tactaccatt acaagttccg tcagaatgct cagaaatgcg       780
     tccaaccatg tgcatggaaa ccaagttcgg aaaactaggc gtggtacggt cgcgggcgga       840
     agctagtacc attttaggat gccgccgttt gtgtgtgatg gactacaata gtggactaaa       900
     ttttttggtg gacacaggtg ctaatatttc agttttaccg gtgcctaaaa taagtaaatt       960
     tatcaaaaat cctaactata agttatatgc agccaatgga actgaaattg caacatttgg      1020
     tgaaaaaacg ttagtgctag atttgaagct acgtcgcgct ttccgatgga acttcgtgct      1080
     tgcagatgtt aaacaggcta tattaggggc ggacttttta acttctaaca atcttttggt      1140
     tgatatgggt gaacgtaagc ttatc                                            1165
//
ID   KAMIKAZE_BM-I repbase;    DNA;    INV; 7270 BP.
XX
AC   AB042120;
XX
DT   25-APR-2010 (Rel. 15.04, Created)
DT   25-APR-2010 (Rel. 15.04, Last updated, Version 2)
XX
DE   Bombyx mori Pao-like retrotransposon Kamikaze DNA (internal
DE   portion).
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; protease; integrase; RNase H; gag domain;
KW   pao-like retrotransposon; KAMIKAZE_BM; KAMIKAZE_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Abe H., Ohbayashi F., Sugasaki T., Kanehara M., Terada T.,
RA   Shimada T., Kawai S., Mita K., Kanamori Y. et al.;
RT   "Two novel Pao-like retrotransposons (Kamikaze and Yamato) from
RT   the silkworm species Bombyx mori and B. mandarina: common
RT   structural features of Pao-like elements.";
RL   Mol. Genet. Genomics 265(2), 375-385 (2001).
XX
DR   EMBL/GenBank/DDBJ; AB042120; Positions     156    7425.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1532..3196,3200..6718)
FT                 /product="KAMIKAZE_BM-I_1p"
FT                 /translation="MPSKSQAAIFREATKFITLLKEIALSILAGDRIKYDM
FT                 ADLSARLPRLDTNKSKLEDVYYEILDDEDLSEEQEKMYTKNYETSIVDYHD
FT                 ILVAWEKINSKPASSPSSQPSTSSTLTTVLPKIALPKFSSKVEDWPSFITI
FT                 FKSLTDDMLTLSDSVKLHYLFSCLSGEALGMVSHLKITNENFSVALDILTR
FT                 RYENRRVLIDRFVDIIMSLPNIHSRSNIRTLFLTPLISAQSALSNLDLPMK
FT                 DCDYIFVSIVVRKLKGELRTLFERKHGSRQSLPTLKNLISFLEEHARCNET
FT                 EWSNTTYSQYNQPSQKSGFSRRQSPTSQPLQVSRQTQYQQRRPFTPNNSRP
FT                 EYLPRTTAPPWQINSAHPTQLSQNNNLYCPYCKTKGHKLITCTRYNDQPIQ
FT                 GRWDFIRARERCQRCLGPHYENECKTTGVCKECGSANHHTSLHRHGASSPI
FT                 QSSAHLLPLNLREQPRQRPTHCPRARSSHATSHTPSPSHTPQVATQSTARD
FT                 DVTALKAERDALARALAAERQRAATAPWLYKEADRPVSPQEYQTHGSSLHQ
FT                 SRSPRRNQLSTITEHDQEEKYAQLMHTHTTHTRPTVSTQTITSAQHENHNP
FT                 NTPILLPTVTLEIADVHGQFQRARALLDCGSMVTLITQRMARTLQLPLKNT
FT                 SLQISGVGNQRTPYSKASIKIVCRPTHSETPTITATAHILKHVTGYLPLGK
FT                 VQNISHMVDQSTIPLADQGYHTPAPIDLLLGSDILGQVLDGTKVSLGPGRP
FT                 IAFGTIFDFTLLGPIHDLYTAPVSKTESAHIVSAQPELEVSTHDIRKSLEK
FT                 FWESEEPQLHVETTPLQDQCEEIFRTTTTRKPSGQYTVTLPFLHNMPELGS
FT                 THAIALRRFLNLEKKLQADPYLRVKYIDFMADYQKLGHMSPCHPSTFAHKP
FT                 HFYIPHHGIFKSGSDKLRTVFDGSCKSSNGVSLNDCLHTGPALQQDIVDII
FT                 LSFRTHPVVFSTDICMMFRNILIHPDQRRYQLILWRSSPDQPLLTYALNTV
FT                 TYGLRSSPYHAIRTLIQLADDEGHRYPAAAQVLRKSIFVDDILTGHDSVVK
FT                 AQALQNDLINLLALGGFQLSKWTSNCPQLLERFPDDQCDMPKNFDISPDSN
FT                 SIKVLDIQWIPQSDELTYRISLPSIKQITKRSILSTVASFYDPNGWVTPVI
FT                 FRAKLLLQKLWLLKLEWDEHTPVEVQTEWNRISQDLPQLSTLRLPRLICTN
FT                 KLKSTYSLHGFADASEASFAAVIFYLHELDEHRCVNVYLVIAKSRVAPVRN
FT                 RLTIPKMELSAASLLTQLMIRVSTQLLSHITIKQHICWSDSTIVLAWLNTP
FT                 PHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLSAHDL
FT                 WWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRF
FT                 SSLDKLVGVTACIKRFIFNCRHNSTDRCSGPLTVGERRDALLFWVRSVQHN
FT                 EFAEDIYRLQVGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLV
FT                 LPSSSPLVDLIIDHYHRINCHPGTDTLHAILRQQFWILSARRVIRHRVYKC
FT                 IRCFRYRAQARAPLMADLPADRVTPQPVFSQVSTDFAGPFLIKSSTLRNAK
FT                 LMKAYFCVFVCLSTKAVHLELVSSLSTEAFLAAMQRFVSRRGTPTLIRSDC
FT                 GTNYVGAKNHLIEVQDFLAQNNDTITHRLANQHITWLLQPPTGPWFTKPWP
FT                 SRNCGQEH"
XX
SQ   Sequence 7270 BP; 2103 A; 1787 C; 1320 G; 2060 T; 0 other;
     ttttttggtc cttcgagctt tgaaccctaa atcctttgga tacaatccat tgccctccat        60
     agacccaccc aaattttgat atacaaacgg ctcaaaaaaa aaaaaaattg gcccttttgt       120
     aggtttcaat cggttataat cagcccatta tttaactcta aaacttattt actataataa       180
     tatcttcatt ttattttatt tttatttatt ttattaggct cacaacacac atcacaagct       240
     aaagatacac aaaaaacaca aataaaaaga aacaaaatct ggcttgcaac ataagacatg       300
     tgcgcacgac aaaacaagac atatagtgct gaatttgtat aacaatgttc cttacaatta       360
     tgacaaaaca acacaataac aaaaactaat ctaacgaata atgtaaggaa gaaaaaaaaa       420
     aaaaaaatcg caatatagta cattaaacaa ttacattaac ctacctatta ataaagtgga       480
     ggatgccctt gaacattttt ctaaacgtaa ctaacctaca agtaaaaata tctaactcag       540
     gtgacgacct tgccagttca ttataggtac gacacattcg ggtaatggga ttataataag       600
     atatattgtt tttataaatt agcaatgcaa acaaattgtt ttggttgacc ctccgagcac       660
     taaatttaat gtttaatgaa atctgagata acagttcagg cgaatccaac agagagtgaa       720
     ttatcttata taagtatatc agatcagtgc atgtacgtcg atcttctagt gactgcatgt       780
     tatagtttaa tagtctttgc tcgtatttaa gttcagagcg gcctggttgt atacgataac       840
     ttaataatct taagcacttc atttgcacac gctcaatagt gttgctcaat ttcgttgttt       900
     ataataatta ctaacacggc aaaagtatat aaattgtctg cccattatac aatcacttca       960
     ttccatttta cccacaacaa taaaaagtta ttaaaagtta aaacgaagaa cgtaaacaag      1020
     tagggactta tcgtctcggc tcatcgaatg aatattatat atacctattt aaatatattt      1080
     ctaatcatat agacctcatt agtacattag tttgattttt aaaagtgtgg aacattgatg      1140
     atttttttca ttaaatttgt tgtcaaagcg tatcgtgatt tgtgtcattt cattatactt      1200
     taacttttat tgtaattaca aacttgtagg tacttacaat tcctacgata tttaggtgct      1260
     tgcgcgccac agtacagttc ataacagtaa atcaactgta actttgattt ttgccatagt      1320
     tcggtgtaga acagtaggtc aaaaggtttt tgaaaaaaaa aaaaattgtt ttcatttaca      1380
     ttatcattac acagggtagg ttcagtatac agggtgcccc attttgcctt tttattataa      1440
     tttttttttt tttttttaga acacactttt tttttccttg tctttttttt tctcttcgcc      1500
     tttgtttagt taagtccata tattgttatc aatgccgtcg aaatctcagg cagctatttt      1560
     tcgagaagca acaaaattca taacattatt aaaggaaatt gccttgtcca tactggctgg      1620
     ggacagaata aaatatgaca tggccgattt gtctgctcgc ttgcctagat tggataccaa      1680
     taaatctaaa ctagaagatg tatattatga gatcctcgat gacgaggatc tctcagagga      1740
     gcaggaaaaa atgtacacaa aaaattatga gacctcgatt gttgactacc atgacatctt      1800
     agtagcatgg gaaaaaataa actcgaagcc tgcttcctca cccagctctc aaccctcaac      1860
     ttctagtacg ctgacgactg ttctgcctaa aattgccctc cccaagttca gctcaaaggt      1920
     cgaagattgg ccttcattta ttacaatttt taaaagtctc acggatgata tgctcactct      1980
     ctcagattct gtcaaactcc attatttgtt ttcatgccta tcgggcgaag cgcttggtat      2040
     ggtgtctcat ctcaaaatta ctaatgagaa tttctccgtt gccttggaca ttttaaccag      2100
     gcgctacgag aatcgccgcg tgctgattga taggtttgtg gacatcataa tgagcctccc      2160
     aaatatacat tcacgctcta atatccgcac actctttttg acacctttga tttccgcgca      2220
     atcagccctt agtaatctag atctgcccat gaaagactgc gattatatct ttgtctcgat      2280
     agtggtgcga aaactcaaag gtgagctccg cactctattc gagcgtaaac atgggtcgcg      2340
     tcagtcttta cccactttaa aaaatttaat ctctttttta gaagaacacg cgcgctgtaa      2400
     tgagaccgaa tggtctaata caacatactc ccaatacaat caaccttctc aaaagtctgg      2460
     tttttctcgt aggcagtctc ctacttctca gccccttcaa gtttcacgac aaacacaata      2520
     tcaacagcgt cggcccttta ccccaaataa ttcccgccca gagtatctac cccgaactac      2580
     tgccccacca tggcaaatta actcagctca tcctactcag ctctcccaaa ataataactt      2640
     atattgtcca tattgcaaga caaaagggca caaactaatt acgtgtactc gctacaatga      2700
     tcagccgata cagggtagat gggactttat tagagcccgc gagcgttgtc aacgctgtct      2760
     aggaccgcac tatgaaaacg agtgcaaaac cacgggtgtg tgtaaggaat gtggaagtgc      2820
     taatcatcac acctcacttc accgccatgg cgcatcgtct ccaatacagt cttctgcaca      2880
     tctccttccc ctgaatttac gggagcagcc taggcagcgc cctactcatt gtcctcgggc      2940
     acgctcgtca catgcgacct cgcatacgcc gagcccatca cacacaccac aagtggcaac      3000
     acagagcacg gcaagagatg acgtgacggc tctgaaagca gaaagagacg ccctcgccag      3060
     agcattggcg gcggaaagac aacgtgcggc caccgcgccc tggttgtata aagaggcaga      3120
     taggccagtc tcaccccaag agtatcaaac tcatggttct tcgctacatc aatcgcgatc      3180
     accacgccgg aaccaatgac tatctactat cacagaacac gaccaggaag agaaatacgc      3240
     tcagctcatg cacacccata caacacacac tcgtcccacg gtatcaacac aaaccataac      3300
     ttcagcacaa catgaaaacc acaaccctaa tacacccata ttattgccta ctgtcacctt      3360
     agaaatagca gatgttcatg gtcaatttca aagagcacga gccttattgg attgtggcag      3420
     tatggtaaca ttaattactc agcgcatggc tcgaacttta caactacccc taaagaatac      3480
     ttcattacaa atttcgggag tgggaaatca gcgcacaccg tactccaagg catcaatcaa      3540
     aattgtatgt cgacccactc atagcgaaac acctacgata acggctacag ctcatatttt      3600
     aaagcatgtt actggttatc tgcctctagg gaaggtacag aatatatcac atatggtaga      3660
     ccagtcaacg atccccttag ctgatcaagg ataccataca ccagctccaa ttgatctgtt      3720
     gttaggctcg gatatcctcg gacaggtttt agatgggact aaagtctcat tggggcccgg      3780
     caggccaata gccttcggca cgatatttga ttttacattg ttaggaccca tacacgattt      3840
     gtatactgct cctgtaagca aaactgaatc ggctcacatt gtcagcgcac aaccagaact      3900
     cgaggtatct acacatgaca ttcgcaagag ccttgagaag ttctgggaat ctgaagagcc      3960
     ccaacttcat gttgaaacta cccctttgca agatcagtgt gaagaaatat tccgcactac      4020
     cactactcgt aaaccctcag gtcaatatac ggtaacttta ccctttttac ataatatgcc      4080
     cgaactagga agtacccatg ccatagcatt gcgcaggttt cttaatcttg aaaagaagtt      4140
     acaagctgac ccatatctcc gtgtgaaata cattgatttc atggcagatt atcagaagct      4200
     gggtcacatg tccccatgcc acccgagtac ttttgctcat aaacctcact tctatatccc      4260
     tcatcatggc atcttcaagt cgggatcaga caagctacgc actgtttttg atggtagctg      4320
     taaaagctca aatggtgtca gcctaaatga ctgtttacac actggtccag ctcttcaaca      4380
     ggacattgtc gatattatct tgtcgtttag aactcatccc gtagttttca gcactgacat      4440
     ttgtatgatg ttcagaaaca tactcataca tcccgatcag aggcgttacc agctcattct      4500
     ctggcgctct tcgccagatc agcctctgct tacatatgcc ttaaacactg ttacatacgg      4560
     gttacgatca agcccatatc atgctatacg cactttaatc caattagcgg atgatgaagg      4620
     tcatcgctat cctgcagctg ctcaagtgct gcgcaagtcc atattcgtcg atgatattct      4680
     cactggtcac gattctgtag taaaggctca agctctccaa aacgacttga ttaacttact      4740
     agccttaggt ggttttcagc tcagtaaatg gacctcaaac tgccctcagc ttctcgaaag      4800
     atttcccgat gatcagtgtg acatgcccaa gaactttgac attagcccag actccaactc      4860
     cataaaagta ttagatatac agtggattcc tcaatcggat gagttaactt atcgtatttc      4920
     tctcccctca ataaaacaaa ttaccaaacg ctcaatcctc agcacagtcg cctcttttta      4980
     tgaccctaac ggttgggtta ctcctgttat cttccgcgca aagcttctcc tacagaagct      5040
     gtggcttcta aagttagaat gggacgaaca cacccctgtt gaagtgcaga cagaatggaa      5100
     ccgcatatca caagatctgc cccaattgtc aacccttcgc ttgcctcgcc ttatttgtac      5160
     aaacaaactt aagtctactt actcgcttca cgggttcgca gacgcctcag aggcaagttt      5220
     tgctgccgtt atattttatc tccatgaact cgatgagcac agatgtgtca acgtatacct      5280
     cgtaattgct aaatcacgag tcgcacccgt tagaaatcgt cttaccatcc ccaagatgga      5340
     gttatctgct gcaagtctct taacacagct tatgatacgt gtctcgactc aattgttgtc      5400
     ccatattacc ataaagcaac acatatgctg gtcagacagt accattgtcc tagcatggct      5460
     aaacacacct cctcatagac ttcaggtctt tgaagctaac agggttgcca agataacatc      5520
     caatccaatc acctccacat ggaaacatgt tcctacaaac ctgaaccctg cagactgtgc      5580
     gagcagggga atgtctgccc agtcactatc ggctcatgat ctttggtggt ctcctagctg      5640
     gctgaaggag cctcctgaca cctggcccaa aatgcctcct gctctaggcc accatgcatt      5700
     accaggtctg aagcccaaga aagtaccagc tcatatagca gttcctgacc tcgaccttga      5760
     cttgcttact cgattcagtt ctctcgacaa gctcgttgga gtgacagctt gcataaaacg      5820
     ctttattttc aattgtagac acaactcaac tgataggtgc tctggtccct tgacagttgg      5880
     agaacgtaga gatgctctgt tattctgggt tcgctctgtt caacacaatg agtttgcgga      5940
     agatatttac cgtcttcagg taggcaagat ttgtaccgtt cgacttcagc gtctttcacc      6000
     cttgatgaaa gatgatctct tgagagttgg tggtcgcctc actcatgcgc caataagata      6060
     cgatgctcag catcctctcg ttctacccag ctctagccca ctagttgatc tcatcataga      6120
     ccactatcac agaataaact gtcatcctgg gactgacaca ttacacgcta tcctccgtca      6180
     gcagttctgg atactctcag cacgtcgtgt catcaggcat cgcgtgtaca aatgcattag      6240
     atgtttccga tatcgcgctc aggccagggc tccgttgatg gctgatttgc ccgcagacag      6300
     agtcacaccc cagccagtat ttagtcaggt ctctacagat tttgctggcc cgtttctcat      6360
     taaatctagt actttacgta acgccaaact catgaaggca tacttttgtg tctttgtttg      6420
     cttatctact aaggcggttc acttggaact cgtttcgtca ctcagcactg aagcgtttct      6480
     tgctgcaatg caacggtttg tatcgcgtcg cggcactcct actcttatcc gttctgactg      6540
     tggcacaaat tatgtaggag ctaagaatca tctcattgag gtacaagatt ttctcgcgca      6600
     aaataatgac acaatcacgc ataggctcgc taatcagcac ataacttggc tgctccaacc      6660
     gcccacggga ccctggttca cgaaaccctg gccttcacga aattgcggtc aagagcacta      6720
     agaagttact ttatcatgtt ataggtgaac agcacctcac atttgaagaa ttttccacac      6780
     ttttaactcg agtcgaggca gtacttaatt ctagacctct ctgcccactt tcgtcagatc      6840
     cctccgattt tgagccacta acagctggcc actttcttat tggctgtcca ctcaccgctc      6900
     ttcctgagcc atcttttgat gataggccat tatcagctct taagcgtttt cagctcatcc      6960
     aagctctctc tcagcgtttt tggactctgt ggaccaaatc ctatctccat actctccaaa      7020
     cccgctccaa atggctttcc acatcctcac ctcctcaagt tggagagctc gtcctcatca      7080
     aagaggacaa tcagcccccg ttgcaatgga aacttggaag gattctccgc acgttacccg      7140
     gcaaggatgg agtgatcaga gtcgtggatt tggacacgaa gcatggaagt ctgcggagac      7200
     ctgtgttcaa gttagccagg ttgccgctgg attcagcaca tgaagaagtt cagccccggc      7260
     cgccccagga                                                             7270
//
ID   KAMIKAZE_BM-LTR repbase;    DNA;    INV; 374 BP.
XX
AC   .
XX
DT   26-APR-2010 (Rel. 15.04, Created)
DT   26-APR-2010 (Rel. 15.04, Last updated, Version 2)
XX
DE   Bombyx mori Pao-like retrotransposon Kamikaze DNA (long terminal
DE   repeat).
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; protease; integrase; RNase H; gag domain;
KW   pao-like retrotransposon; KAMIKAZE_BM; KAMIKAZE_BM-I;
KW   KAMIKAZE_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Abe H., Ohbayashi F., Sugasaki T., Kanehara M., Terada T.,
RA   Shimada T., Kawai S., Mita K., Kanamori Y. et al.;
RT   "Two novel Pao-like retrotransposons (Kamikaze and Yamato) from
RT   the silkworm species Bombyx mori and B. mandarina: common
RT   structural features of Pao-like elements.";
RL   Mol. Genet. Genomics 265(2), 375-385 (2001).
XX
RN   [2]
RP   1-374
RA   Jurka J.;
RT   "Consensus of long terminal repeat.";
RL   Direct Submission to Repbase Update (25-APR-2010).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 374 BP; 81 A; 112 C; 89 G; 92 T; 0 other;
     tgttcgcgcg acagcgcgac gtttgtaaat gttcggctca actcgggtgc cgtcgcccgt        60
     acgcaccccg cacctctcat aacagtgcgg tacatgacgg cacgcggaga tacgctcgtt       120
     cgatattgag taaattgtgc gcgcgcgcct ttcgttatat actaagtaaa aggttgagtg       180
     tgaaccggtg aaaaggtgta tgtgccaccc atcgcagagg aacaccacta cgaccgtgat       240
     agtgccagca tcagcctcca agtaagtccc gttttcctac ctaccctttc gtgtccgctc       300
     attctccgca gagttcatat gctccctttc agctcatcag ctcacgttta aggtgacgct       360
     cacctgcgtc acca                                                         374
//
ID   KBOC_DB     repbase;    DNA;    INV; 3300 BP.
XX
AC   AY116624;
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Drosophila bocqueti transposon P-element k-boc putative
DE   transposase gene, complete cds.
XX
KW   P; DNA transposon; Transposable Element; KBOC_DB; P-element;
KW   putative transposase.
XX
NM   KBOC_DB.
XX
OS   Drosophila bocqueti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RA   Nouaud D., Quesneville H. and Anxolabehere D.;
RT   "Recurrent exon shuffling between distant P-element families.";
RL   Mol. Biol. Evol 20(2), 190-199 (2003).
XX
DR   Genbank; AY116624; Positions       1    3300.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(151..450,716..1372,1429..2157,2328..2402,
FT                 2524..2922)
FT                 /product="KBOC_DB_1p"
FT                 /note="transposase"
FT                 /translation="MSFCEFCCAVVKTEGVKFIRVPKEDRKRKLWEESLGC
FT                 SLAHNARICDTHFKGSDFYGETKTKEERKRRRLMPNALPRQPTPEPESIPT
FT                 VKPGYSNAYTQTIDLENFKLKQKISELEKEIHHLRQQLSESDALRQGLTKI
FT                 FTQNQIKMLPNCGKRIRYNSSDMSEAICLHAAGPRAYNHLYRKGYPLPSRA
FT                 TLYRWLSEVEIKTGTLDIVMDLMKNEDMDEADKVCVLAFDEMKVSAAYEYD
FT                 SAADAVYKPASYVQLAMVRGLKKSWKQPVFFNYNTAMDACTLKAITTKLYK
FT                 SGYIVVAIVCDLGPGNQKLWREFGISEENTWFSHPVDPALKIFAFSDVPHL
FT                 IKLVRNHYVGSGLLISGTKLTKNTVQQAMNCCSSSDLSVLFKLTENHINVR
FT                 SLQKQKVKMATQLFSNTTASAIRRCYELGYEIENACETADFFKMINDWFDT
FT                 FNSKLSTANSLKYSQPYGLQHDLQKDILDKTSLTMSGKIIEKSQRRLPFQH
FT                 GIIVSNKSLDGLYIYLKEKYNMEYILTSRLNQDILEQFFGAMRSKGGLYDH
FT                 PTPLQLKYRLRKYITAKNTELLTGKGNVEDGEEEEWLNLGDIDEMTEDAIE
FT                 YVAGYMIKKLKLRDMSNKDATYTYVDEVSHGGLKKPSSQFVEQLKKLEAIF
FT                 QLYAKEEFDLQINVKRTLLNAAEKLNVPLDIKQLFFKCRIYFRIKHLNKKL
FT                 AIKNQKQRIVANSKLLKIKL"
XX
SQ   Sequence 3300 BP; 1133 A; 569 C; 659 G; 939 T; 0 other;
     cataatggaa taactataag gtggtctcgt ttgaaaaagc tcgagtgttt ctcatgctta        60
     cggggtctgt tctcactctg attttgacag ttgacaggtt gtgcgaacga atttttattt       120
     tatttgttaa cccttgggag tgcgtaaaaa atgtcgtttt gtgaattttg ttgtgcggtc       180
     gtaaaaactg aaggagtcaa attcatccgt gttcccaaag aagatcggaa aagaaaattg       240
     tgggaagaat ccttaggatg cagtttggct cataatgcca ggatttgcga cacacacttc       300
     aaaggatcgg atttttacgg agaaacaaag accaaagagg aacgaaagag aaggcgtttg       360
     atgccaaacg ccttgccaag acagcctacc ccggagccgg aaagtatccc gaccgtcaaa       420
     cctggatatt caaatgcata cacacaaaca gagtaagtcc gaaatgcagt ttctaaataa       480
     attttttgga aattgaaaaa aagttaggtt aggttgagtt aggaaaaaaa gtgatacaaa       540
     gcaaaaaaaa gtgaattgaa tatatttatg tatgtaaaaa cacacaaaat tgttgcatcc       600
     atatgtgcat acatacatat taaagtgtaa acagaatcgc aaagagttta tttggcacat       660
     cttatatata ttttcgaatg atttttaaaa tacatttgtt cttttgatat tcagcatcga       720
     cttggaaaat tttaaactga agcaaaaaat ttcggagctg gaaaaggaaa ttcaccatct       780
     gcgccaacag ctgtcggagt cggacgcatt gcggcagggt ctgactaaaa tcttcaccca       840
     aaaccagata aaaatgttgc ccaattgcgg caaaagaatt aggtacaact cgtcggacat       900
     gtcagaagca atttgccttc atgctgctgg accacgggct tacaaccacc tgtatagaaa       960
     aggatatcca ctacctagcc gtgcgactct atacaggtgg ttgtcagaag tcgaaataaa      1020
     aacggggact ctcgacatag tcatggactt gatgaagaac gaggacatgg atgaggctga      1080
     caaggtttgt gtcttggcct tcgacgagat gaaggtttct gctgcatacg aatatgacag      1140
     cgctgcggac gcagtgtaca agcccgcaag ctatgtccaa ttggccatgg ttcgaggatt      1200
     gaaaaaatcg tggaagcagc cggttttttt taactacaac actgccatgg atgcctgtac      1260
     cttgaaagca ataacaacca agctctacaa gtcaggatac attgttgttg ctattgtgtg      1320
     tgatttgggg cccggaaatc aaaagttgtg gagggagttt ggaatatccg aaggtaaata      1380
     tgaaaaaaat catttcagaa atttctaaaa tatttttttt ttattttaga aaatacctgg      1440
     tttagtcatc cagtggatcc agctctcaaa atttttgcat tttcggatgt gccacacttg      1500
     atcaaattgg ttcgaaacca ttatgttggg tcagggcttt taatcagcgg gactaaattg      1560
     acaaaaaaca cagtccaaca ggcaatgaac tgctgttcca gctcagacct gtctgtcctt      1620
     ttcaagctaa ctgagaacca catcaatgtt cgatctcttc aaaaacaaaa ggttaaaatg      1680
     gcaacgcagc tattttcaaa cacaacagca agtgccatca gacgctgcta tgaattgggc      1740
     tatgaaatag aaaacgcatg tgaaacggct gattttttca aaatgattaa tgattggttt      1800
     gacacgttta attcaaaatt atctacagca aattcattaa agtatagtca accgtatgga      1860
     ttgcagcacg acttgcaaaa agatattttg gataaaacat ctctaacaat gtctggaaaa      1920
     ataattgaaa agtcgcaaag gcgtttacca tttcagcatg gaattatagt gagcaacaaa      1980
     tcactggacg ggctatatat ttatttaaag gaaaaatata atatggaata cattctgaca      2040
     agccgattga atcaagacat tcttgaacaa ttctttggtg ccatgaggtc aaaaggcggc      2100
     ctgtacgacc atccgacgcc actacagctt aagtatagac taagaaaata tattacaggt      2160
     atatttgagc aacaaaaaca gcaacgaatt aacttgtgat atgacaaatt agttaatgtt      2220
     tatattgtag caaaccccgt gattgttggt agttatgtct tgtcctttgt tctataaatg      2280
     tttataaatg ccattataga tttttaataa cattcacatt tttcgcagcc aagaatacag      2340
     agctgctgac aggcaaagga aatgtcgaag atggtgaaga agaggagtgg ttaaatttgg      2400
     ggttcaaaaa agaaaaagac tgtgatgact cccaatgtga cgatgccttt cagacggaag      2460
     gaaataaaga aaatgagact gaatactgac actgtgatcg aaatacctga ccatctgaca      2520
     agtgatattg acgaaatgac tgaggatgcc atcgagtacg ttgctggata tatgataaaa      2580
     aaactgaaat tgcgtgacat gtcaaataaa gacgcaacgt acacatacgt ggatgaagta      2640
     tcgcacggcg gtcttaaaaa acccagctcc cagtttgttg aacagctaaa aaagctagag      2700
     gcaatttttc aactttacgc caaagaagaa tttgacctac aaataaatgt gaagagaacc      2760
     ctgttaaacg ctgccgaaaa gttaaatgtc ccattagata taaaacaatt attttttaag      2820
     tgtaggatat attttagaat taagcattta aataagaaac tggccataaa aaatcaaaag      2880
     cagcgcattg tggcgaattc aaaattgtta aaaataaaac tttgaaaagg attataacga      2940
     aaactacaaa tcaactgttc ttaatttgct tattttttta ttcagtatca tttcttgggt      3000
     tgcgcggtct tcctgagcat tcaaaatttg tttttccgac ttaaggtcaa aaattattaa      3060
     aaatctaaat atatttcaaa aattattaaa tttttcattt ttctttatag cattttagct      3120
     tatgtttcag cagtgggttg tgcatataca cacagccaga ctaagggtta aactcacttg      3180
     actcaaatcc atgctcaaaa caaactgaca gcaaaagctc ttttgagtgt ttttgaaaag      3240
     cttttttccc ataggctaga gctttttcta acgagaccac cttatagtta ttccattatg      3300
//
ID   Kiri-10_AAe repbase;    DNA;    INV; 4476 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4476
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 705-705 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..1034
FT                 /product="Kiri-10_AAe_1p"
FT                 /translation="MSTKRDLSTRRAKQDEAATSSEDMSVSQLAQWISSKL
FT                 DTTKEELVKRINEGMVSVKTEIKTELDIMRSQLDKSISDLSKSVATNSDAI
FT                 QSTTSALSRSQYTNDLIVSGVPYIKDEILTNYFETWCKQLGYTSVPLVDIR
FT                 RLSKQAMDVGKSYKILLQFAITNQRSDFYHKYLKARSLALDQIGFKSNDRI
FT                 FINENLTPLARAIKAKALLVKKEGKLHSVFSKNGEIFVKRSAGANAILISS
FT                 ESHLVQVLQQL"
FT   CDS           1480..4302
FT                 /product="Kiri-10_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAEQTDLNTSTNICVPGIVLRSAFVAEKLSVMCLNVQ
FT                 SLCARNMIKFDELRQIMNVSNVDVACVCETWLNSRIDTSLVEIAGYNSIRS
FT                 DRIGRTGGGLLIYIKKCFKFRTLDTSYVTINGHTIEFMFIEAHIQNRKILI
FT                 GLFYNHPELDCSDVLFEKISEYGSNYDEILVSGDFNTNLLKKNTKSERLLE
FT                 TLDVLGLMNVGIEPTFFYSQGCSQLDLVMTNNNNSILKFGQVSVPNISHHD
FT                 LMFVSLDLTTVQSEQDVYYRDYKNVNPNRVIEQFNQLDWVSFYDADNPDTL
FT                 ISLFNLNVKTLYECCIPLRKLKNPKGRSNPWFNAQIQKSMVDRDRAYKKWK
FT                 ITKSYNDFQNFKRLRNVTNTLVTKAKRDFFNCQLNTDLPSKQLWNKLKELG
FT                 FTTRSLNVENNFTADEINWSLHKHFSTSSSDTVQSESFVSNGFRFSNIQEY
FT                 DVINAIFDINSNAVGLDDIPIKFIKFVLPLLLHPITYLYNCIITKSVFPRA
FT                 WKLSKIIPIKKKNNCSSLDNLRPISILSALSKAFERILKKQICAYIHENHL
FT                 LSKCQSGYRPGHSVKTAMIKICDDIGLVLDRGNSVIMILLDFSKAFDTISH
FT                 SLLCKKLQHNFNFYKDAVDLISSYLKNRKQAVFSNDMLSSFLDVSSGVPQG
FT                 SVLGPILFSLYINDLPPIIKHCQVHLFADDVQLYLNCNKSDLNMVANKINE
FT                 DLECIRAWSERNLLKLNAKKTNALLISRYIQVEYPEIKIGNETIGFVDRAT
FT                 SLGFTVGNNFKWDSYVLGQCGKIYGSLRSLYTKASLLSTNVKLKLFKTFIL
FT                 PYFISCDFLFFNVSSNTQERLKVALNSCVRFVYNLKRQDHVTHLQHTLLGN
FT                 SFFSFFKTRICLLLHKIIITKQPSYLHSKLQPFRSNRIRNFLIPAHLTTLY
FT                 AGSFFVRGVIIWNSLPNVIKELNSMFKFKKQCKVHFK"
XX
SQ   Sequence 4476 BP; 1426 A; 788 C; 832 G; 1430 T; 0 other;
     ttggcaacac tggtatatgg agtagtcata gaagctaagt gctgacgcaa agaaatgctc        60
     aaaaagtgca ataataccgt aaattaaatc cccagtgtag tgcatattta cttcaaaact       120
     atcatttaaa atgcagaagt gatatcttgt gccaatatca gttgacaagc ttaaaaactg       180
     aaagtaaaaa aattgctgtg ttgattggtg tcatcaaaag tttggatcgg ttgacttagc       240
     ggttttatcg ttatcgttta cggtgtaatt catcgataat gagtaccaaa cgagatctga       300
     gcactcggcg agccaagcaa gatgaggctg caaccagtag tgaggatatg tccgtctctc       360
     agcttgccca gtggatttcg tccaaactcg acactacgaa ggaggaactg gtgaagagga       420
     tcaacgaagg aatggtgagc gtaaaaacag agatcaagac cgaactggat attatgcgct       480
     ctcaattaga taaatccata agtgatctca gcaagtcggt ggctacaaac agtgatgcta       540
     tccaatccac tacgtcagcc ctaagtcgtt ctcagtatac gaacgacttg atcgtgagtg       600
     gtgtgccgta catcaaggat gagattctca cgaactattt tgaaacatgg tgcaaacaac       660
     tcggatatac ctctgtacca ctcgttgata tacgtcgtct ctcaaaacaa gcgatggatg       720
     ttgggaagag ctacaaaatt ctgctccagt tcgcaatcac caaccaacga agcgattttt       780
     accacaagta tctgaaggca agatcactcg cgctggacca aattggattt aagagcaacg       840
     acaggatttt catcaatgaa aatcttacac ctcttgcgag agcaatcaag gctaaggcac       900
     tcttggtgaa aaaagaagga aagctgcatt ctgtcttctc gaaaaacggg gaaatattcg       960
     tcaagagatc tgccggagca aatgctatcc tgatttcgtc ggagagtcat ctggtacaag      1020
     tacttcaaca actataacct ttccttcgct acactcactc tccttccaat ccatcctata      1080
     acaatcccat gattcctctc ctaaaagtca ttcgatagct tgcaccctct cctaatgaac      1140
     gctctctgtc cttccaatcc attcccaaaa ttatcctatg tttcctctcc taaaagttat      1200
     ctggacctgt gcggggatgc tgttgggatg ctgttgcgag gatgctgctg ttgctgttga      1260
     ctgctgtgct gaagaatgct atccgaattt agggatgatt atcaaaatga ttctaaaaat      1320
     gtatttgttc aagaagaatg ttattgctga aaaaatattt tgaatattgt gtgtactttt      1380
     tgagttctta tttgcgtcac tgtagctatg tttgattaat gtttttgagt tttagttttg      1440
     acaccttgca ttgctgctta aatatttcat tcatggataa tggctgaaca aaccgatttg      1500
     aacacctcta cgaatatttg tgtacctggt atagtcttga gatctgcatt tgtggctgaa      1560
     aagttatctg ttatgtgtct caatgttcag agcttgtgtg ctagaaatat gatcaaattt      1620
     gatgaattgc gacagataat gaatgtgtct aatgtggatg ttgcatgtgt gtgtgagact      1680
     tggttgaaca gtagaatcga tactagctta gttgaaattg ctggctataa ctcaataaga      1740
     agtgatcgga ttggtagaac aggaggcggt ttgctgatct acattaaaaa gtgcttcaaa      1800
     tttagaactc tagacacttc ttatgtgacg atcaatggcc atacaattga attcatgttc      1860
     attgaagctc atattcaaaa taggaagatt ttaataggtc tgttctacaa tcatcctgaa      1920
     ttggattgtt cggatgtttt gtttgaaaaa atatctgaat atggttcaaa ttacgatgaa      1980
     atcttagtat caggagattt caacactaat cttttaaaaa agaatacaaa gtctgaacgt      2040
     ttgttagaga cactggatgt tcttggtttg atgaacgttg gaattgagcc gacctttttt      2100
     tattcacaag gctgttccca gttagactta gttatgacca ataataacaa cagtattctc      2160
     aagttcggtc aagtcagcgt tccaaatatt tctcaccatg atctgatgtt tgtgtccctt      2220
     gatttaacga cagttcaatc agaacaagat gtttactatc gtgactataa gaatgttaat      2280
     ccgaatcgag tcattgaaca gtttaatcaa cttgactggg taagttttta tgacgctgac      2340
     aatcctgata ctcttattag tttgttcaat cttaatgtaa aaactcttta tgaatgctgt      2400
     atacccctac gaaaattaaa aaatccaaaa ggcagaagta atccatggtt taacgcacaa      2460
     atccagaaat ctatggtaga tcgagatcgt gcatacaaaa aatggaaaat tacaaaaagt      2520
     tataacgatt ttcaaaactt caagcgactg agaaatgtta cgaatacttt agtaacaaaa      2580
     gcaaaacgtg atttctttaa ctgtcaattg aatacagact tgccttcgaa gcaactgtgg      2640
     aataaactga aggagctagg atttacgaca cgctctttga atgtggagaa taattttacc      2700
     gcagatgaaa tcaactggtc actccacaaa catttctcaa cgtcgtctag tgatactgtt      2760
     caatctgaat cattcgtttc aaatggcttt cgatttagta atatacaaga gtatgatgtt      2820
     atcaatgcta tcttcgatat taattcaaat gctgttggac tggatgacat accgattaaa      2880
     tttatcaaat tcgttctacc gctgttgctg catccaatca cgtatttata taattgtatc      2940
     atcaccaaat cagtttttcc gagggcatgg aagttgtcaa aaataattcc aattaagaaa      3000
     aagaacaact gtagctcgct ggacaatctc cgccctatta gcattctaag cgcgttatcc      3060
     aaggcatttg aacgcattct caaaaaacaa atatgcgctt atattcatga gaatcattta      3120
     ctttcaaaat gtcagtctgg ttataggcct ggccatagtg taaaaactgc catgataaaa      3180
     atttgtgatg acattggact tgttctagat aggggaaata gtgtaataat gatattgtta      3240
     gatttttcaa aagcatttga cactatatcg cactctttac tctgtaaaaa gctccaacac      3300
     aattttaatt tttataagga cgctgtcgat ttgatttcgt cttatttaaa aaatcgtaag      3360
     caagctgttt tttcaaatga tatgttgtca tcttttctag atgtttcatc aggtgtgcca      3420
     caaggttctg tcctaggtcc cattttattc agcttatata ttaatgatct tcccccgatt      3480
     atcaaacact gtcaagttca tttgtttgcg gacgacgtcc agctttattt gaactgtaac      3540
     aaatccgatc taaatatggt cgcaaacaaa atcaatgagg atttggaatg tatccgagcg      3600
     tggtcggaga gaaatttgct taaacttaat gcgaagaaaa ctaatgcttt attgatttct      3660
     cgctacattc aggtcgaata tccagaaatt aaaataggta acgaaactat tggatttgta      3720
     gatcgtgcaa ccagcttagg ttttactgta gggaataact tcaaatggga tagttatgtg      3780
     ttaggtcagt gtggtaaaat ttacggttca ttgcgatctc tttatactaa agctagttta      3840
     ttaagcacaa atgtaaagct gaaactattt aaaacgttca ttttacccta ttttatttca      3900
     tgtgactttc tctttttcaa tgtgtcctct aacactcaag aacgattgaa agttgcatta      3960
     aattcatgtg ttcgttttgt ttataatctc aagcgccaag atcatgttac acacctgcaa      4020
     catacattgt taggtaactc tttttttagt ttctttaaaa cacgtatatg tcttttattg      4080
     cataagataa ttataacgaa acagccctct tacctacact ctaagttaca accgtttcgt      4140
     agtaatagaa taagaaactt tttaattcct gcacatctca caactttgta cgcaggttct      4200
     tttttcgtaa gaggtgtcat tatatggaat tctctgccta atgtcattaa ggagttaaat      4260
     tcaatgttta aatttaagaa gcaatgcaag gttcacttca aatagttagt tgttagtaaa      4320
     ataatcgtta tagaaaagaa aaatggtaga aagtagtttg aatatttctg tgacgcactt      4380
     catgcaaaaa aaaaacgttg tagcgttcaa aagatgtaaa tcttatgcta cgtgtgtaat      4440
     aaataataat aataataata ataataataa taataa                                4476
//
ID   Kiri-10_CQ  repbase;    DNA;    INV; 4384 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4384
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 129-129 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           58..840
FT                 /product="Kiri-10_CQ_1p"
FT                 /translation="MSNKTKTRSASAVDGDGQTLKRSREDLTVADYPDEVE
FT                 NITDLWRNMKKLLFNSNSRLEGKIDACKTSIDDLEEEFVALRKECGEQMEA
FT                 VHHRVNSVEFGLQQTAEDVARLERASELIISGIPYQQTENLPQFFQNIATV
FT                 LGYDQPPIVDLQRLAKLPIAAGSAPPILCQFALRNVRNDFYRRYMTNRDLT
FT                 LRHIGFDADKRIFMNENLTKLAREIRSQALRMKKAGIFAQVFTRNGAVYVK
FT                 RQGQPTSELVQCVQQLSLQK"
FT   CDS           1407..4241
FT                 /product="Kiri-10_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFDSSNDDASANYLIPRAVMNACLVNDKLNICHINVQ
FT                 SLCARRFSKFEELKLNFITSKVDIICLTETWLDDSITDATIEIQGYNLVRQ
FT                 NRNRHGGGVCVYFKQNISCKILKKSLGAISTNGRYETDFLLLEMQFNGNRF
FT                 VLAVYYNPPQSDCSYLLRTHIEQFCLKYENSFFIGDFNTDIRKNTRKTNDF
FT                 IDTIASMSFSCVNFEPTFFYNDGCSLLDLLLTNSPELVLKFNQVSMPGISA
FT                 HDLVFATLDFEKRVDLDGYWYRDYNNFNNHAFENALSRLSINEFLSIDDSD
FT                 ILLNTLNNHMFILHEQAFPVKFKKSFYKSWFNPDIERAIINRDIAYNAYKR
FT                 SKSPEHRTNYNRLRNVVNYLTKTAKRDHDRQRINLNVPVRQMWKNIKKLGV
FT                 SKSKNNNIDSTHSAEEVNNYFASNYSERSSSSIHYSHSTDSFHFRQIHSYE
FT                 IVDAVYSIKSNAAGLDNLPISFLKVVLPFLLPFFEHLFNTIVKTSNFPALW
FT                 KRVKVIPIYKKSGSSEITNLRPISLLCTLSKVFEKVIKDQISHYITEMNFL
FT                 HALQSGFRKNHSTETALMKVHDDIALSVDKKCVAVLLLIDFAKAFDRVSHV
FT                 KLLNKLISLYNFSNAATKLLKSYLTERYQAVFLNGILSSFILCESGVPQGS
FT                 ILGPLLFSLFINDLPNVLKYCSVHLFADDVQIYFCSDQNFNIPDICSKINF
FT                 DLNQIHTWSESNLLSINPAKTKALLITKLKTKPDFPNLIMNGAQICFVNEA
FT                 NNLGLIFRDNLEWDLQIKSQCRKIYISLKQLTLTTKHLDVNTKLKLFRSLI
FT                 FPHFIYTDFIYSNANGMHIDRLRIALNACVRYVFNLNRMSRVSHLQKHLIG
FT                 CSFSNFYKFRSCVVLHRIINTKKPTYLYEKLVPFRNTRTYSFLIPNHSSFY
FT                 YSQSFFARGIVNWNSLPTTLKQNTSKYNFKQSLLANLNINH"
XX
SQ   Sequence 4384 BP; 1361 A; 851 C; 759 G; 1413 T; 0 other;
     cgttgcttcc cactattctt ggcagtcaaa cacctggaaa cgtcaggttt gtttacgatg        60
     tcaaacaaaa caaaaacacg ctctgcctct gcagtggacg gagatggcca gactctgaag       120
     cgctcgagag aggatcttac tgttgcagat tatccggacg aagtggagaa cattaccgac       180
     ctgtggcgca acatgaagaa gctgctgttt aattcgaact cacgtctgga aggaaaaatc       240
     gatgcgtgca aaacgagtat tgatgatttg gaagaggaat tcgtcgctct caggaaggaa       300
     tgtggtgagc aaatggaggc tgttcaccac cgggtgaact ccgtcgagtt cggattacaa       360
     caaactgctg aagatgttgc taggctggaa cgggcgtcgg agctgataat ctctgggatt       420
     ccttatcaac agaccgagaa ccttcctcag ttcttccaaa acattgctac tgtgctcggt       480
     tatgaccaac ctccgattgt tgacctgcaa cgactggcca agttacccat tgcagccgga       540
     tctgctccac caatactgtg ccaatttgca ctgcgaaacg tacgtaacga tttctaccgt       600
     cgctacatga ccaaccggga cctgacgtta cgacacattg gttttgatgc tgacaaaagg       660
     attttcatga acgagaacct cacgaagctg gcccgggaga ttcgcagtca agctctgagg       720
     atgaaaaaag ctggaatctt tgctcaagtg ttcacaagga atggtgctgt gtacgtgaaa       780
     cgccagggtc aaccaacatc ggagctggtg cagtgtgttc aacaattgtc gctgcaaaag       840
     taaacccttt cctcaaagtt cttcatctcc ttcccaagct tatcctttga ttccattcct       900
     tttctccttt gattccttcc cctcctgaaa gtcaacaaca tagaagataa accctttcca       960
     aaaagttatt ctttatccct ccacgatcat cctttgattc cgatcccttt cgatcctgtg      1020
     tctcctccat ccgtcctgaa agtcatgctg gttcgtgtcg atgatgcctt ctgctggact      1080
     gtaacgctgt agatgctgat ttggttgctg aagttgctgt tatggaaatg ctgttggtgc      1140
     tgttcgtgcc atgggatggc tgtggtcagg tcgagactgg aacatggtac aaatagaaac      1200
     gtgtgtgctt gctaacttta ctgctgccga tatttgtttt gatcaaattc tgattttttt      1260
     ttcctacatt atggctcgta caaaaaagtt ttctaaaacc tatttagtta gttttaagtt      1320
     atggttctct ttattaagct atggttcaat tggtgtaggt ttggtgggcg gcttttgttt      1380
     gaaatttagc gcgttcccca ctaataatgt ttgattcttc taatgacgac gcctctgcaa      1440
     attacttgat tccaagagct gtaatgaatg cttgtttggt gaatgacaag ctgaatatat      1500
     gccatattaa cgttcagagc ctctgtgctc gccgtttttc caaatttgaa gaactcaaac      1560
     taaactttat tacaagcaaa gtggatatta tctgtttaac agaaacctgg ttggatgatt      1620
     ccataactga tgcaaccatt gaaatacaag gttacaactt agttcgacaa aaccgtaatc      1680
     ggcacggtgg gggtgtatgt gtatacttta agcaaaatat tagctgtaaa attcttaaga      1740
     aatctcttgg tgcaatttct accaatggtc gttatgaaac tgattttctg ttacttgaaa      1800
     tgcaatttaa tggaaatcgt tttgttttag ctgtgtacta caacccgcca caaagtgact      1860
     gttcttacct acttcgcacc cacattgaac aattttgttt aaaatatgaa aattcatttt      1920
     ttattggcga ttttaacact gatattcgaa aaaatactag aaaaactaat gattttatag      1980
     atacaatcgc tagcatgtcg ttttcttgtg tcaattttga acctactttt ttctacaatg      2040
     atggttgctc tcttctagat cttttattga caaattcacc agaattggta ctcaaattta      2100
     atcaagtatc catgcccgga atatcggctc atgatctagt gtttgctact ttggattttg      2160
     aaaaacgtgt tgacctagac ggttattggt atcgtgatta caataatttt aacaatcatg      2220
     ctttcgaaaa tgcattatcg cgtcttagca ttaatgaatt tcttagcatc gatgattctg      2280
     acattcttct caatactttg aacaatcata tgtttatctt acatgaacaa gcttttccag      2340
     taaaattcaa gaagtcattt tataaatctt ggtttaaccc agatattgaa agagctataa      2400
     tcaacagaga cattgcttat aatgcttaca aaagatcaaa atcaccagaa catcgcacca      2460
     attacaaccg tcttagaaat gttgtgaatt atttaactaa aactgccaaa cgtgatcacg      2520
     atcgacaacg tatcaactta aatgttccag ttagacaaat gtggaaaaac ataaaaaaat      2580
     taggagtctc taaaagtaaa aacaataaca ttgatagcac ccattcagcg gaagaagtta      2640
     acaattattt tgcgtctaat tatagtgaaa gaagttcgtc tagtattcac tattctcatt      2700
     caacagatag tttccatttt aggcaaatcc acagttatga aatagtggat gcagtttact      2760
     caatcaagtc taatgctgct ggtcttgaca atcttccgat ttcatttcta aaagttgttc      2820
     ttccctttct actgccattt tttgaacatc tctttaatac tatcgtaaaa acatccaatt      2880
     ttccagcact ttggaaacgt gttaaagtga ttccaatata caaaaagagt ggatcttcag      2940
     agattaccaa tttaagacca ataagtttgc tatgcaccct ctcaaaagtt ttcgaaaaag      3000
     taataaaaga ccaaatttca cattacatta ctgaaatgaa tttcttacat gccttgcaat      3060
     ctgggttcag aaaaaatcat agcacagaaa cagcactaat gaaagttcac gatgatattg      3120
     cgttatctgt tgataaaaaa tgtgtcgctg ttcttctgct gattgatttt gccaaagcat      3180
     tcgatcgcgt ttctcatgtt aagcttttga ataaacttat ttctttgtac aatttctcaa      3240
     atgctgctac gaaattgtta aaaagttact taacagaacg ttaccaggca gtttttttga      3300
     acggtatttt atcatcattt atcctttgtg agtctggagt tccacagggc tctattcttg      3360
     gaccattact attttctctg tttataaatg atttgccaaa cgttttaaaa tattgctcag      3420
     tacatctttt tgcggatgat gtgcaaattt atttctgttc tgatcaaaac tttaacattc      3480
     ctgatatttg ttcgaagata aattttgact tgaatcaaat tcatacttgg tctgagtcta      3540
     atttattatc aataaatcct gctaaaacta aagcgttact aattactaaa cttaaaacga      3600
     aacctgattt tcctaacttg atcatgaatg gcgcacaaat ctgtttcgtc aacgaagcaa      3660
     acaatcttgg cctgattttc agagataatt tagaatggga tcttcaaatc aaatctcaat      3720
     gccgaaaaat atacatatct ttgaagcaac ttactctaac aacgaaacat cttgatgtta      3780
     atactaaact taagttattt agatcgctga tttttccaca ctttatctat accgatttta      3840
     tttactctaa tgccaacggt atgcatattg ataggctacg tattgctttg aatgcttgtg      3900
     taagatatgt tttcaactta aatagaatgt ctagggtttc gcatttacaa aaacacctta      3960
     ttggatgtag tttttcaaac ttctataaat ttagatcatg tgttgtctta cacagaataa      4020
     ttaacaccaa aaaacccaca tacctttatg aaaaattagt accgtttcgt aacaccagaa      4080
     cttacagctt tctaataccc aaccatagct cattttatta cagtcaatcg ttttttgcta      4140
     ggggcattgt aaattggaac agccttccga caacattgaa acaaaatact tccaaatata      4200
     atttcaagca gagtttactc gccaacctca acattaacca ctagttaaat aagagaacca      4260
     aataaattaa agttagttaa tttaaattga agcagaactc agcagaacac acactgtaac      4320
     ataaaaaaga ctatgtctta agttactata tggaataaaa caaataaata aataaaaaaa      4380
     aaaa                                                                   4384
//
ID   Kiri-10_DTa repbase;    DNA;    INV; 4429 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   29-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4429
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5920-5920 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1335
FT                 /product="Kiri-10_DTa_1p"
FT                 /translation="MSVTAAPSTKRLRSNNNNCNGIANERVSDAPSSQLLE
FT                 MLNLRLQEQTQKLTGLVQDAEQRILGGLLTRLDGIAADLKLVGERVASVEA
FT                 EVAEIRSDRDKVNERINNLDHKVCELFTLKERVGELEAKLSSQQMATQACE
FT                 LRMHGIPFLEGENLKTLYHKLCFSLQLTPPPKFTEIFRARKTQRSSVDPVV
FT                 IIKMENYHEKITLLRCIGAYRRTAKQQLSLQLIGFDSQAALYINEQLLREH
FT                 YIIFKEAMKLKKHKILTAVFTRRGFVHVRCGDNMLYRIERMDELSALSRDL
FT                 GAQTQTALPLSSTSGTTSAASSGSHDRAGALNSESFRP"
FT   CDS           join(1476..2312,2276..4258)
FT                 /product="Kiri-10_DTa_2p"
FT                 /translation="MFDQTEVGSSIAASLIRILAKHKKGIKVVHINAQSLL
FT                 KKIDEFRYLFVQSNVDVICVSETWFLSDFSDLSIACDDYVVYRADRFSHAG
FT                 GVAIYVNKKLNSTVKCKHPIDSEIEYLFLELSGKDLSSKALIGCIYRPNRT
FT                 IDHAPLINVLREISVEYTDVIITGDFNSNILREKHLLDSFESIGLTSVNLY
FT                 TPTHFTNTCDTLLDLFFVNVPSKILLYDQVSVPVFSKHDLIFLTYDLTLAY
FT                 NSDTFEFRDYKNINYTELEVEYNNCDWTSICLPISSINLDVHMSPNIEHQL
FT                 NIFNSNIEYLYNKCVLIREKTIHPKQNPWFTXNIKKNIAIRDAFYNKWKRY
FT                 KTEFFRMQYTRARDNVRXIIRSAKXEFYGSKFQNLSTKKTWRELKNIGIGN
FT                 TKQLAQHQVNVNDLNRKFVQFDVPEATCNKYLNALPDCDNRFSFMCVSQCD
FT                 VLECLLKVKSNAEGLDGISPKFIKLXLPLLLGHITHIMNTAITTSTFPSAW
FT                 KFAKIVPIPKSQTEFRPISLLPYLSKIFENILAAQIQPFMDXHSMLSEXQS
FT                 GFRKNRSCVSAITDVVEDIRSRLDKNWITFLTLLDHSKAFDTVNHSILCTK
FT                 LKNLFNFSDSAVMLMRSYLTGRQQAVVSGSCCSSFVSVSRGVPQGSVLGPL
FT                 LFSIYVNDLPNVLSPCDVHLYADDVQFYVSKPLCQVNDCISMCNTLLFKIN
FT                 TWATENGLCLNPKKSKCVIIYKKPFDTSQLPNLIIGNSPIKYEESAGNLGI
FT                 TFNNTLTWSKHISRATGRTYGLLRQLSTSQSFLPTQLRMLVAKTILVPTLF
FT                 YGVEIFGHCDTQDTQKLTVACNSIVRYVFNLRRTDHTSHLVNNVLDLSLSQ
FT                 WIDLKTLIFIHKIVCTREPSYLFQKLLPAQSQRTQNFIIPRYKTLCSKRQF
FT                 FINAIRLWNYLPHAIKTIRSASQFKSKIKKLMLDQN"
XX
SQ   Sequence 4429 BP; 1329 A; 913 C; 820 G; 1359 T; 8 other;
     catcgaaccg aactgttgaa cggacgtgtt tttgatagct ccgaagaaaa tccagttttt        60
     acctagtatc ttaggccaaa aaatctaatc tccggtgtaa tattggaaca ttttcctgcc       120
     ctcactgtga acactgtgaa ttgtggatcg ccactgaccg tgcaaagttt caatcgattt       180
     aaaacaatta ataatcacaa acttcgatct gcacttgttt tgttgttttt gtgcatcaaa       240
     ccgggcatct acacttgtgt gtgtgaatcg aacatcgttt taccgccttc ttcaactacc       300
     accgtacctc tacataatca cttgccttac acgtacgcag taaccatgtc tgtgactgct       360
     gctccatcta ccaagcgtct gcgtagcaac aacaacaact gcaacgggat agccaacgag       420
     cgtgtgtccg atgcgccgtc atctcagctg ctggagatgc tcaacttgcg tcttcaagag       480
     caaacacaaa aacttactgg cctggtgcaa gacgcggagc agcgtattct tggtggcctt       540
     ttgactcgtc tggatggaat cgcagctgat ctaaagctgg tgggagagcg ggtcgcgagc       600
     gtggaggctg aggttgccga gatacgatcc gacagggata aggtgaacga gcgtatcaac       660
     aacctggatc ataaggtctg cgaactgttc acattgaagg agagagttgg cgagttagaa       720
     gccaaactgt cttctcagca aatggcaact caggcctgcg aattacgcat gcacggaata       780
     ccatttttag agggtgaaaa tctgaagact ctttaccaca aactctgctt ttcgctgcag       840
     ctcactccgc cgccgaagtt taccgaaatt ttccgggcca gaaaaacaca aagatcttca       900
     gtggacccgg tggtcattat aaaaatggaa aattaccacg aaaaaatcac gctgttacgc       960
     tgcatcggag cttaccggcg cacggctaaa caacaactta gcttacagct gattgggttc      1020
     gactcacaag cagctcttta tattaatgag cagcttttaa gagagcacta cataatcttt      1080
     aaagaggcca tgaaactaaa aaagcataaa attttgacag ccgtctttac tcgcagaggc      1140
     tttgtgcatg tccgctgcgg tgacaatatg ttataccgca ttgagcgcat ggatgagctt      1200
     tcagcgctct ctcgtgatct gggcgcacaa acacaaaccg ctcttcccct ctcttctaca      1260
     tcgggtacaa cttctgctgc ttcatctgga tcgcatgata gggctggtgc tcttaacagt      1320
     gagagctttc gcccctaaaa ttktaccttt atatttatct gtagtattta tgcctttata      1380
     tttaattatt gttaattgtc aaaagtttgc aactatctcg ttatctccta aatttatctt      1440
     ttttgctaaa gcgcgcttct cagtaggtcc tcaacatgtt cgaccagact gaagtaggta      1500
     gttccatagc tgcgagttta ataagaatct tagctaagca caaaaaggga attaaggtcg      1560
     ttcatattaa tgcacagagt cttttgaaaa aaattgatga gtttaggtac ttgtttgtcc      1620
     agtctaatgt tgatgttatt tgcgtgtctg aaacttggtt cttgtccgat tttagtgatt      1680
     tgtctattgc gtgtgatgac tatgttgttt atcgtgcaga tcgttttagt catgctggtg      1740
     gtgtcgctat ttatgtgaac aaaaaattga attctaccgt taaatgtaag catccaatcg      1800
     atagcgaaat tgaatattta ttcttagaac tttcaggtaa agatctttct tcgaaagcac      1860
     taataggatg catttaccgg ccgaatcgta ctattgacca tgccccctta ataaatgttc      1920
     tgcgtgaaat atctgttgaa tatacagatg ttattattac tggcgacttt aatagcaata      1980
     tcttaaggga aaaacatctg cttgatagtt tcgaatctat aggcttgact tcagttaatt      2040
     tatacactcc tacacatttt accaacacct gtgatactct tcttgacctt ttttttgtta      2100
     atgtccctag taagatttta ttgtatgacc aagtctctgt accagttttc tctaagcatg      2160
     acctcatctt tctgacgtat gatttgactt tagcttataa ttctgacact ttcgaattta      2220
     gggactataa aaatattaac tatactgaac ttgaagtaga gtataataat tgtgattgga      2280
     cgtccatatg tctcccaata tcgagcatca attgaacatt tttaacagca acattgagta      2340
     cctttataac aaatgtgtgt taataaggga aaaaactatc catccaaagc aaaatccttg      2400
     gtttaccmat aatattaaaa aaaatatagc gatccgtgat gctttctaca ataagtggaa      2460
     amgatataag acagaatttt ttagaatgca atacactcgg gcgcgtgata atgtccggca      2520
     katcatcaga tctgcaaagt kcgaatttta tgggtccaaa tttcaaaact tatctactaa      2580
     aaaaacttgg cgtgaactta aaaatattgg aattggtaac accaagcagc tggcccaaca      2640
     ccaagtgaac gtcaacgatt tgaacaggaa gtttgtgcaa ttcgatgtac ctgaagctac      2700
     atgtaacaag tacctgaatg ccttaccaga ctgtgataat agatttagtt ttatgtgcgt      2760
     tagccaatgt gatgttcttg aatgtttact taaggtgaag tcaaacgctg aaggcctgga      2820
     tggcattagc ccaaaattta ttaaattatt wttaccatta ctccttggcc atataacaca      2880
     cattatgaac acagcaatta ccacatccac ttttccctct gcatggaagt tcgcgaaaat      2940
     tgtacctatc ccgaaaagtc aaacggaatt cagacccata tccctacttc cttacttgtc      3000
     aaaaattttt gaaaacatat tggcggcaca gatacaaccc tttatggatg ascattccat      3060
     gcttagtgaa aakcaatctg gatttaggaa aaataggagc tgtgttagtg ccattacaga      3120
     tgtagttgag gacattcgat cgaggctaga taaaaactgg ataacgtttt tgactctact      3180
     tgatcacagc aaggctttcg ataccgtcaa ccatagtatt ctatgcacaa aactaaaaaa      3240
     ccttttcaat ttttccgact ctgcagtcat gctcatgagg tcctatctaa caggtagaca      3300
     acaagcagtc gtatctggga gttgttgttc tagctttgtt tcggtgtcta gaggcgttcc      3360
     ccaaggatct gtgctagggc ctttattgtt ttccatctat gttaatgatt tacccaatgt      3420
     tctgtcccct tgtgatgtcc atctatacgc tgatgatgtg cagttttatg ttagtaagcc      3480
     tctatgtcaa gtcaatgatt gtattagtat gtgtaatacc ctgcttttca aaattaatac      3540
     ctgggccacg gaaaacggac tatgtctaaa cccaaaaaaa agcaaatgcg taattatcta      3600
     caaaaaaccc ttcgatacat cgcaactccc gaatttaata attggaaata gccctatcaa      3660
     atacgaagaa tcggcaggaa acctgggtat tacctttaac aacacgttaa catggagcaa      3720
     acatatctcc agagcaactg ggcgaacata tggacttctg agacagcttt ctacttctca      3780
     gtcgttcttg ccaacccaac ttcgaatgct agtggccaaa acaatcttgg ttcccacctt      3840
     gttttacggt gtcgagattt ttgggcactg cgacactcaa gatactcaaa aattaactgt      3900
     tgcttgtaat tcgatcgtcc gttacgtgtt taatcttcgt cgcactgacc acacttccca      3960
     cctagtcaat aatgttcttg accttagcct tagtcagtgg attgacctta aaacattaat      4020
     ttttattcat aagattgtgt gcacccgtga accgtcttac ttgtttcaga aacttcttcc      4080
     agctcaatcg caaagaacac aaaattttat tatccctcga tataaaacct tatgctcgaa      4140
     gagacaattt tttataaatg caattcgcct atggaactat ctcccacatg ctatcaaaac      4200
     aattagaagc gcgtctcaat ttaaatcgaa aattaaaaaa ttaatgctag atcaaaatta      4260
     gttgcaaact tataatcaaa ttattaaccc tactttgtta gattttaagt tttactttta      4320
     aattaaatta ttcttgttac tcaatccgat gtgactagcg caataaatat aagtttttac      4380
     ttgtagcgtt aggatataaa caaataaaat tgaaattgaa aaattgaaa                  4429
//
ID   Kiri-10_HMM repbase;    DNA;    INV; 3004 BP.
XX
AC   .
XX
DT   26-FEB-2013 (Rel. 19.10, Created)
DT   26-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-10_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3004
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2810-2810 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2646
FT                 /product="Kiri-10_HMM_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="FNLXRXXRISXRGGXVCIYLKTDIXYKILQHSPNEYS
FT                 ANLEYLFLEINCRHTKVLLGVVYSPSMNINYFHTFEIVLESLVSSYEHTII
FT                 MGDLNTCLLKQDSRAKRLQSLMTSFNLSILTLSETHFPPNSDPSLIDVIMA
FT                 SKPENVRVHGQLTAPFSYHDLLFVSYTLSLPKRRGKVLMRRNYKHIDHDSF
FT                 ASDASLMDWSHFYSSSDIDEKVDIFNNNLLSLFNAHAPLKPVRFRRPPAPW
FT                 LTSYVKIIMKKRDKAKRKCKWHPSPENVAVYKKLRNRCNRLCRDAKRRYIT
FT                 SCIDNFSPSQTWRFFESLGVGKSRNISYQSIDLNSLNSYFSTSPVRMAKSN
FT                 KTLCLRKLAQATQPNCDPFAFHEVTVEEVRKGIVSISSKAVGSDNLSRDML
FT                 LLVLHLVTPIITHILNFSFESKSFPTAWKSAHVLPLPKQSNPIHFSHFRPI
FT                 SILPVLSKFLEKSAFQQLSNYLFQNNLLNTFQSGFRPSHSTCSALIKVTDD
FT                 IRFAMDNKKLTILILLDFSNAFNSVDFDVLLGILSTLNISPAATEWFRSYL
FT                 RGRKQRIYTGELCSDWADLVTGVPQGGVLSPLLFSIFINEITKILSCQYHL
FT                 YADDLQLYRHATLEDLNTAILNINTDLAHISEWATLFGLLINPSKSQALII
FT                 GSRQLRARVDFNTLPCIKLNETIIPLSDSARNLGLIIDSQLSWSANINVIS
FT                 KRIHYSLHSLKRLQNFLPIRTKIILAQSLLLPLLDYADVCYPDANEEALDK
FT                 LDRLQNMCIRFIFGLRKFDHVSDFRRQLNWLPVRLRRNLHILTMLFNILKS
FT                 SSPPYLRERFQLTLPSERPVRSCVTQRKLEYPICNTSFYEKSFTVQAVHLW
FT                 NSLPNSILSGNPSLNTFKIKLKQHFLHLN"
XX
SQ   Sequence 3004 BP; 831 A; 655 C; 463 G; 1038 T; 17 other;
     ttcaatctca wtagaawtgw wcgtattagt aawagaggcg gwgstgtmtg tatttacctt        60
     aaaackgata ttwcttataa gatcttacaa cattctccca acgaatactc agccaattta       120
     gaatatctct ttcttgaaat taattgccgc catactaaag tccttcttgg tgttgtttat       180
     agtccctcta tgaatattaa ttatttccat acttttgaaa tagttcttga aagccttgtc       240
     tcttcttatg aacacacaat cattatgggc gacttgaaca cttgccttct aaaacaagac       300
     tccagagcta aaaggttaca atctctaatg acttctttca atctctccat tcttaccctc       360
     tctgaaacac attttccwcc aaattctgac ccctctttga ttgatgtcat tatggcctcc       420
     aaaccggaga acgtacgtgt acatggtcaa ctgacagccc ccttctcgta ccatgacctc       480
     ctgtttgtaa gttacacwtt atcactacct aagcgaagag gcaaagtktt aatgcgtcgt       540
     aactataagc atattgatca cgactcgttt gcttcagacg ctagtttaat ggattggtct       600
     catttctatt catcttctga cattgacgaa aaagttgaca tttttaacaa taacttatta       660
     tctttattta acgctcatgc accacttaaa ccagtccgtt ttagacgccc gcctgcccct       720
     tggctaactt cgtacgtaaa gataataatg aagaaacgcg acaaagccaa gagaaagtgc       780
     aagtggcacc cgagtccaga gaatgttgct gtctataaaa agctgcgaaa tcggtgtaac       840
     aggttgtgta gagatgcaaa acgccggtat ataacttcct gcattgataa tttctctcct       900
     tctcaaacat ggagattctt tgagtcacta ggcgtgggta aatctcgtaa catttcttat       960
     cagtccattg atttgaattc tctaaatagt tacttttcta cttcccccgt gcgtatggcc      1020
     aaatccaata aaactttatg tcttcgaaaa ctggctcagg ccacccagcc taactgtgat      1080
     ccttttgcct tccatgaagt gacagtagaa gaagttagaa agggtatcgt atctatttcc      1140
     tctaaagctg ttggaagtga taacttaagt cgtgacatgt tgctgctagt gctacatctt      1200
     gtaactccta ttattactca cattctaaac ttctcattcg agtcaaaatc tttccctact      1260
     gcctggaaaa gtgcacatgt actcccgtta cctaaacaat ctaatcctat tcatttttca      1320
     cactttcgtc ctatttccat ccttcctgtc ctttcgaagt tccttgagaa atcagctttt      1380
     caacagcttt ctaactatct attccaaaac aatcttttaa atacattcca gtccggcttc      1440
     cgcccatcac acagtacatg ttcagcgtta attaaagtta ctgatgatat tcgtttcgcg      1500
     atggataata aaaaattaac tatacttatt ttactcgact ttagtaacgc gtttaattct      1560
     gtggattttg atgtgttact tggtatcctt tccacactta acatctctcc tgctgccact      1620
     gaatggtttc gttcttatct tcggggtcgc aagcaaagaa tctacaccgg agagctttgc      1680
     tctgactggg ctgatttggt aactggtgta cctcaaggcg gcgtactctc tcctctgctc      1740
     ttttccattt ttataaatga aattaccaaa atcctatctt gtcaatacca tctctacgct      1800
     gacgatttac agctatatag acacgccact cttgaagact taaacactgc aattctgaac      1860
     attaacactg atctcgctca tattagcgag tgggcgactt tgtttggcct tcttattaac      1920
     ccctccaaat ctcaagctct aataattggc agtaggcaat tacgtgccag agtagatttt      1980
     aacaccttgc cttgcattaa attaaacgag acaataatac cgttgtctga ttcagcaaga      2040
     aatttgggtc tcataattga tagccagttg tcgtggtctg cgaacattaa tgtaatcagt      2100
     aaacgcatac attattctct gcactctctt aaacgccttc aaaatttttt acccattcgc      2160
     actaaaatca ttcttgctca atctcttctt ctgccactgc tagattacgc tgatgtttgt      2220
     tatcctgatg ctaatgaaga ggctctcgac aaacttgacc gacttcagaa tatgtgtatt      2280
     cgttttatct tcggcttacg caaatttgac cacgtgtctg atttccgtcg acaactgaat      2340
     tggcttcctg tgcgtttacg tcgtaacctg cacattctca ctatgctttt taacatttta      2400
     aagtcatcct ctcctcctta cttaagggag cgttttcaat tgacacttcc aagtgaaaga      2460
     cctgtacgct catgtgtaac tcaaagaaag cttgagtacc ctatatgtaa tacctctttc      2520
     tatgaaaaat ccttcacagt tcaagcagtg cacttatgga actcactacc taactctata      2580
     ctgtcgggca atccatctct aaatactttt aaaatcaaac taaaacaaca ttttcttcat      2640
     ctcaattaga atctttagta gtcgctttgt ctttttcttt attaattttc tttttctgtt      2700
     tcaactcttt tatgtcattg tatatattta tatgtttgta tgtgtgtatg tttgtataat      2760
     gtttatgtag gtatagtaat attgattaat attagtgtat atttgtatgt agtattatta      2820
     ttattattaa cgtaatatta aaataccgca cccgaatmat ttcttwtgac atctcctaca      2880
     ttcaagggtt tctggtagag atctctatta gagataagtt atcctttgta cacwtttttc      2940
     ctgttgttat aagttttctg tactttctwt cttgtgtggt acataataaa tggaaaaaaa      3000
     aaaa                                                                   3004
//
ID   Kiri-11_AAe repbase;    DNA;    INV; 4282 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4282
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 706-706 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1116
FT                 /product="Kiri-11_AAe_1p"
FT                 /translation="MSNLQRTPPRTVNNAPNKRLKRDEEGDTDITLNSAVN
FT                 MLMSQFRETREMIDDFRKDINNKIDAVKTELEGKLNLVTQEIGSFKLECAA
FT                 KFGSNDVALSTMHERVDQLSHTIGNLQNRSELIISGIPFSSEEKLSEFFVA
FT                 MCRQLGFDGDAYPAVDVRRMKARATLKDGDECLIAIQFALRNSRDDFYNAY
FT                 LRTRDLKLRHLGLESDRRIYVNENLTVTARKVKVAALRLKKAGKLSSVYTK
FT                 QGVVHVKSTAESHPVVVNSEKDLVLFS"
FT   CDS           1275..4121
FT                 /product="Kiri-11_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSRTVDQTSTNIPGAVLNAVLLSGKFNICHGNAQSLC
FT                 ARKTSKLDELRHVLSKSKVDVACFTESWLTSRITDRSVAIPGYRSVRNDRV
FT                 YKRGGGIIVYYKEHLSCLKVMSTEVSTESNDKTECLALEFCLCGEKFVVVT
FT                 VYNPPENDCSCFISDMMVEFTSRYNGIFMVGDFNTNLLRPCGRTSRLLSVL
FT                 NGFSMKSVGDEPTYFCDESCSQLDLLLTSDSEKILRFGQVSFPALSHHDLI
FT                 YGSMDYDTVDAPTFSTYHDYVHFDAQRLQDAVLSTPWADFYSINDPDELLQ
FT                 FFNDHMKIIHDTCIPCRTISHRKKFNPWFTPAIRRAMLERDLSYKDWLKAP
FT                 SQLKAQKRLQYKTLRNRVNIMITKAKEHHMERFLDCRLPSKTLWKRVKDLG
FT                 IGKDNETKPCEFDPDEVNSVFMTNYINDIGNRTSPIHVPASPYNFSFKRVQ
FT                 VWEIVNAIWDIKSNATGLDELPIKFLKLILPLIAHHIAYMYNKFIELSFFP
FT                 SSWKHAKVLPLRKKPHLNAISNLRPISILCALSKAFEKLLKKQMTSYIESN
FT                 GYLSDSQAGFRKMQGVKTAVLRVHDDLSALMDKRGTSILLLLDFSKAFDTV
FT                 SHKKLCSKLVRQFNFSTPAVGLIESYLTNRSQTVCCKGRYSESKTVMSGVP
FT                 QGSVLGPLLFSCYINDLPTVLKHCSMQLYADDVQLYIGRIGPCARELTAMM
FT                 NADLERIMEWCNRNGLRVNQSKSVALLIRNRRRRVESAEPLPEMMMDGLPI
FT                 KWANSVNNLGYVFQNDLQWDGLALQQCGKIYAGLRSLRYCAEQTPVTTRLK
FT                 LFKSLILPHFIFGDSFLVNPGAETMNRLRVALNCCVRFVYGLSRFAHVSHL
FT                 QKNLLGCPFQNFYAYRSCMFLRKLIKIKNPPALFQKLVPFRGQRSQNIIIP
FT                 ANRTLTYASSMFVRGIVNWNSLPHSIKRETSEVAFKEKCLNFWSR"
XX
SQ   Sequence 4282 BP; 1295 A; 768 C; 924 G; 1295 T; 0 other;
     ttatgtgtgt acaagataca atgtgccacg aatagaaggt gctgcggcaa attttaaatg        60
     tgaagtgcag ctgttagtaa attccctgga aatctcgcca gcgcaatcca gagaacccgt       120
     ggtttttttc gtgcgtgtta tcgagctaaa tcttgataat ctaaggtgtc tttttgcaat       180
     cgaaagtttc gactcagttc aacattgaaa ggccattgtt tcactgtgga agtatccatc       240
     taccaccaac tgttgctcgc ctctgttgtc actacgcaga caactaaaac tggtctaaag       300
     gtgtttgcaa caatgtcgaa tctgcagaga actccgccgc gaacagtaaa caatgcgccg       360
     aacaaacgct tgaagagaga tgaagaagga gatacagaca tcaccctgaa tagtgcggtg       420
     aacatgctca tgagtcaatt ccgtgaaacc agagagatga tcgacgattt tcgcaaggac       480
     ataaacaaca aaattgatgc tgtgaagaca gaactagagg gaaaattgaa cctagtgacg       540
     caggaaatcg gctcatttaa attggaatgt gcggcaaagt tcggcagcaa cgacgtcgct       600
     ttaagtacga tgcacgagag ggtagatcaa ttatctcaca ctattggaaa cctgcaaaac       660
     cgaagtgaac tgattatcag tggtattcct ttttcgagcg aggagaagtt atctgagttt       720
     ttcgttgcaa tgtgtagaca gctcggtttt gacggtgatg cgtatcctgc agtcgacgtt       780
     aggcgtatga aggccagagc tactctgaag gatggtgatg aatgcttgat tgcaatacag       840
     tttgctctca gaaattctcg ggatgacttt tacaatgctt atttgcgaac ccgtgatttg       900
     aagttgagac atctaggatt ggaatcggat cgtcgtattt acgttaatga gaatttgact       960
     gttactgcgc gaaaagttaa ggtagcggca ctacgactta aaaaagcagg caaactgtct      1020
     tcagtttata ctaagcaggg cgttgttcat gttaaatcaa cagcagagag tcatcccgtt      1080
     gtagttaatt ccgaaaaaga tttagtttta ttttcgtagt tatttgtttt tatctctttt      1140
     tgtcgatctg cattttagtc atgtttaaaa tttgttattt atgttagtgt tattgtattt      1200
     tcgtgaagat tgtttttact gttggaagca gaaaagtttt atagattgac aactaattac      1260
     aagttttatt aataatgtca cgtacagtag atcaaacttc aacaaacatt ccaggagcag      1320
     tgttaaatgc ggttttgctt tctgggaagt ttaatatatg ccacggtaat gcacaaagcc      1380
     tgtgtgcaag aaagacgagc aagttagatg agcttcggca cgttttatca aagtctaagg      1440
     tggatgtagc gtgctttaca gagtcttggc tgacgtcgag gatcactgat cgcagtgtag      1500
     caatcccagg ctatcgaagt gtgcgtaatg atagagttta taagcgtgga ggaggaatca      1560
     tagtttatta taaagaacac ctttcttgtc tcaaagtaat gagtacggaa gtttccacag      1620
     aatcgaatga taagacagaa tgtctggcac tggagttttg tttatgtggt gaaaagtttg      1680
     tcgtagtaac tgtttataat cctcctgaga acgactgttc ctgcttcata tctgatatga      1740
     tggtagaatt tacttctcgt tacaatggta ttttcatggt cggcgatttt aatactaacc      1800
     ttttgcggcc ctgtggtaga acatctcgtt tgttgtccgt tctaaacggt ttctcaatga      1860
     aatccgttgg tgatgaacca acgtattttt gtgacgagag ttgttctcag ctggatttat      1920
     tgctcactag cgacagtgag aaaattttgc gttttggaca agtcagtttt ccagcactgt      1980
     cgcatcatga tttgatttat ggctccatgg attatgatac ggttgacgct ccaacattca      2040
     gcacctatca cgattatgta cattttgatg ctcagcgatt acaagatgct gttttgtcta      2100
     ccccgtgggc cgatttctat tcaattaatg atccagacga attgctccag tttttcaatg      2160
     atcatatgaa aataatccat gatacttgta ttccatgtcg gacaataagc caccgtaaga      2220
     aattcaaccc ttggtttact ccagctattc gtcgagcaat gttggagaga gatttgtcgt      2280
     ataaagactg gttgaaagcg ccgtcacaac ttaaagcaca aaaacgacta cagtataaaa      2340
     ctttgcgtaa tagggtaaac ataatgatca ctaaagctaa agagcatcac atggaaagat      2400
     ttttggactg tcgtttacct tctaaaactt tatggaagcg agtgaaagat ctaggaattg      2460
     gaaaagataa tgaaacaaaa ccatgtgagt tcgatccaga tgaagtcaac agcgttttta      2520
     tgacaaacta tatcaatgat attggcaatc gtacatcacc aatacatgtt ccagcttcac      2580
     catataactt ttcatttaaa cgagttcagg tttgggaaat tgtaaatgca atatgggaca      2640
     taaaatcaaa tgctactggg ctcgacgaat tgccgataaa gttcttgaaa ctaattttac      2700
     cgttaatagc tcatcacatt gcatatatgt acaacaagtt tattgaactc tccttttttc      2760
     cgtcttcgtg gaaacatgcg aaagtattac cgttacgtaa aaagccacat ttgaatgcaa      2820
     tctcaaattt aagaccgatt agtattttgt gtgctctttc aaaagctttt gaaaaactgt      2880
     tgaaaaaaca aatgacatct tatattgaga gcaacggtta tttatcggat agtcaagctg      2940
     gattcagaaa aatgcaaggt gtaaaaactg ctgttttgcg cgttcatgat gaccttagcg      3000
     ctttgatgga caaacgaggg acaagtatat tgcttctttt ggatttttcg aaagcatttg      3060
     atactgtgtc acataaaaag ctatgttcca agctggtgag acaattcaat ttttcaactc      3120
     ctgcggttgg actaattgag tcgtatctca cgaatagaag ccagacagtt tgctgtaaag      3180
     gccgatactc tgaaagcaaa actgtaatgt caggagtccc acagggttcg gtactaggac      3240
     cattgttatt cagttgttac atcaatgacc ttcccactgt gctgaaacac tgttccatgc      3300
     aattatacgc agatgatgtg cagctgtaca ttggtcgaat aggaccttgt gctcgtgaac      3360
     tgactgcaat gatgaacgct gatctagaga ggataatgga atggtgtaac cggaacggat      3420
     tgagagtaaa ccaatcgaaa agcgtagctt tgttgatccg aaaccgaaga agacgcgtgg      3480
     aatcagctga gcctttacca gaaatgatga tggatggact accgataaaa tgggcaaact      3540
     ctgtgaacaa ccttggctat gttttccaga atgatctaca gtgggacggc ttggctttgc      3600
     aacagtgtgg aaaaatctac gctggactta gatcgttacg gtactgtgcc gaacaaacac      3660
     cggttacaac aagattaaag ttatttaagt cgctcatttt gccccacttt atttttggtg      3720
     attcgtttct agtaaatcct ggtgcagaaa ccatgaatcg gctccgcgta gcacttaatt      3780
     gttgtgtgcg ctttgtgtac ggcctgagtc gttttgcaca tgtgagccat ctccaaaaga      3840
     acctccttgg ctgtccattt cagaactttt acgcatatcg atcctgtatg tttctgagaa      3900
     aactgataaa gattaaaaac ccaccagccc tgtttcaaaa acttgtgcct tttcgtgggc      3960
     agcgctcgca aaatataata atcccagcaa atcgcacgtt aacatatgct agctcaatgt      4020
     ttgttagagg aatagtaaat tggaacagtt tgccccattc tattaaacgg gaaacatcag      4080
     aagtagcttt caaggaaaaa tgtttgaatt tttggagtag atagtattat ataagacttt      4140
     attgtacact atgtaactaa ttataatctg tgaaattatt atttatgtta aatctgcaat      4200
     gtgtcgccga atgtagtaat ttaaaaggtt aaaccttacg ctactggaaa taaataaatg      4260
     aatgaatgaa tgaatgaatg aa                                               4282
//
ID   Kiri-11_CQ  repbase;    DNA;    INV; 4318 BP.
XX
AC   AAWU01038353;
XX
DT   26-DEC-2010 (Rel. 16.01, Created)
DT   26-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   Kiri non-LTR retrotransposon from Culex quinquefasciatus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-11_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4318
RA   Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 130-130 (2011).
XX
DR   EMBL/GenBank/DDBJ; AAWU01038353; Positions   14531   10214.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1434
FT                 /product="Kiri-11_CQ_1p"
FT                 /translation="MEEIKCNQCNKVDPPGKRGRKSAKNKNVNKPKIDWIE
FT                 CDGCSAWYHSVCVRVNEALLGNMNEYYYFCEKCPLRGSLVSKPAHPAPASP
FT                 AAPAGPSIQEIEQLKQTISDLAAQLVKIQAEVDSVRTTSKKQHDRLQSKLN
FT                 SADQRDGQCAAQSALINNIEQKLEIIEAGARLASTCSQSVNSCRLAINKIP
FT                 AREGENLRGIVESVINFLGVPQEMSHITSCFRLEVKPSKWSDRSLTPTIVA
FT                 VFDNRESRERVLRRYFEKHKDAKLCHLKHAPDLEYRFTINEMLSVHAFRIR
FT                 NLALRYKQRKAIRSVFVRNDSISVLLPGKQRYTPVNSPEHLLELLGHDHQA
FT                 DESSVFFDARSLDVSSSSRC"
FT   CDS           1470..4310
FT                 /product="Kiri-11_CQ_2p"
FT                 /translation="MSRTNLPNLRIGHLNVRGLEHSIDGVKLLLDKTQYHF
FT                 VGVTESKLKQSSPAGPIRVPAYNFIKHSLPTGRGRGARTCGGVGLYVQKGI
FT                 KATPILRSLHDPTIPISQRFEFLAVQAKINDLNICVVVLYNPVCTNPHFAQ
FT                 AYEKLLIDLLDFGFDRLFLVGDFNINVAAPQQSVNLVALSRINAAFNLTVL
FT                 PTGPTRITETTSTTIDLLITDSPGSVIKSKTCTGNAISDHEVVYLLSNVRM
FT                 PRSAPQTVRTRNLRAIDPMRLQMDFQARNLQPILEAEDTSAKAVLLNGVLT
FT                 DLLQQHAPERTIVVRDKRTPWISETIKQAVALRDLAFALYSRNPNRVRGDN
FT                 QWQDYIQKRDRANSLIFAAKKRYADQHFDANLPAKTLWCNLRREGIHNNAK
FT                 KNQATEGTDADELNKFFSDGHRQLLGARQENPAEPAHRTEIDHGADEFTFR
FT                 ATSGEEICRKIYEIQTNATGPDDIPISFIKLLCPFVLPILTHLFNEIIMTK
FT                 VFPECWKKAIITPIPKQSNPAQPKDFRPISVLPAVSKVLEKILLSQIAEHL
FT                 DNPNAPLLAGQQSGYRKGHSTTTALAKVTHDLYENLDNGRCTVMVLVDFSL
FT                 AFNCVKHQKLRTKLQSEFRFSRAACDLISSFLARRKQSVRLADTLSGERDV
FT                 PDGTPQGSCLSALLFSLYINSLPSTLKCSYHLYADDLQVYTSGPSADVDTL
FT                 VRAINEDLEAIARWADANWLAPNPKKTQAIVFCKTGIVEPQTNITFCGQTV
FT                 PLSETVVNLGLKLDRNLTWKPQVNDVVMKTYNVLRTFRRFGSVLSTQTRLK
FT                 LVQAVVMPIFSYGDIIYTPGLSAALKGQLHRCFKSTVRFVYGLRRRDTTAA
FT                 VRDNILGVDLPSNQRLRICCFMRQAYHGSLPEYIQQHVQRGQLERARCFII
FT                 PRHTTSSGKSVLVYGATCWNGLPIEAKTKTTLFSFKSCVKQLV"
XX
SQ   Sequence 4318 BP; 1155 A; 1215 C; 998 G; 950 T; 0 other;
     cagtgtgtta gtgacatttg acagataaac aaacactttg gcaacactgc taggccacag        60
     cagcaaagaa aaccgcgctc cctcaaaccg cttttttacg ctgtttttta tcaaatctgc       120
     aaacaaaata aagtgcaaaa ctcaaactag tggtcctaaa acagtttttt ggtgtttgcc       180
     aaagctttcc tactttccaa cctgtgaaaa tccgtttcca aatttccgaa aaacacaagg       240
     aacttacact ccaagtgact taccgtttta tcgtttgtga cgtgtgttgt tgtttaaatg       300
     tgtttgtaaa ttggaactgt cagcgtcgtt gtggtcgtat caccgatgga ggaaataaag       360
     tgtaatcagt gcaacaaggt ggacccacct ggaaaaaggg gaaggaaaag tgccaaaaac       420
     aaaaatgtaa acaaaccaaa aatcgactgg atcgaatgcg atggatgttc agcatggtac       480
     cactccgtgt gtgtccgtgt taacgaagcg ctgttgggta acatgaacga gtattactac       540
     ttctgcgaaa aatgccctct gcgcggaagc ctcgtatcga aacctgcaca tcctgctcct       600
     gctagccctg ccgctcctgc tggccccagt atccaagaga tcgagcaact gaagcagacg       660
     attagcgacc ttgctgccca gctagtgaag attcaagctg aagtggattc cgtccggacg       720
     acaagcaaga aacaacatga ccgactacag agcaagctca acagtgctga tcaacgcgat       780
     ggccagtgcg ctgctcaaag cgcactaatc aacaacatcg agcaaaagct ggagatcatc       840
     gaagcaggtg cgaggctcgc aagtacgtgc tcgcaatcgg tcaatagctg ccgcctcgcc       900
     atcaacaaga tccccgcacg ggaaggtgag aatctgcgcg gtatcgtcga aagtgtgatc       960
     aacttccttg gcgtccctca agagatgtca cacatcacga gctgtttccg gctcgaagtg      1020
     aaaccgtcga agtggtcgga ccgttcactt actccgacga tagtagcagt gtttgacaac      1080
     cgggagtcac gtgaacgagt gctcagaagg tacttcgaaa agcacaaaga tgccaagttg      1140
     tgtcatctca agcacgctcc cgacctcgag taccggttca caatcaacga gatgttgtca      1200
     gtgcatgctt tccgcattcg aaacctggcc ctgcggtaca agcaacggaa agccatccgc      1260
     tcagtcttcg tccggaacga cagtatctct gttctgctcc caggtaaaca aaggtacacc      1320
     cctgtcaaca gtccagagca tctcctcgag ctcctgggac acgaccacca agcagatgag      1380
     tcatctgtgt tctttgacgc tcgctcgttg gacgtgtcat cttcctcccg ttgctgattt      1440
     tccactcgac gctgacgatc ccccgaacaa tgtctcgaac aaatttgcct aatctccgta      1500
     tcggtcacct aaacgtccgt gggcttgagc acagcatcga tggagtaaag ctgcttctgg      1560
     acaagacgca gtaccacttc gtcggtgtca cggaatccaa acttaaacaa tcttcaccag      1620
     ctggtccaat ccgtgtccca gcctataatt ttatcaaaca ctcactgccg actggccgtg      1680
     ggcgtggtgc gcgtacgtgt ggtggtgttg ggctgtacgt gcagaaaggg atcaaagcca      1740
     ctccaatcct tagatcctta catgacccaa ctattcccat cagccagaga tttgagtttc      1800
     ttgccgtaca agctaaaatt aacgacctca acatctgcgt ggtggtgttg tacaaccccg      1860
     tctgcacgaa cccacacttt gctcaagcct acgaaaaact tcttatcgac cttctcgact      1920
     ttggatttga ccgactattc ttagtcggcg atttcaatat caatgtggct gcacctcaac      1980
     aaagcgttaa tctggttgcg ctttcccgga tcaacgccgc attcaacctc acagtcctcc      2040
     caaccggacc gacacgaatc accgagacca catcaaccac tatcgacttg ttgataaccg      2100
     actctcccgg atcggtgatc aaatcgaaga cctgcaccgg caatgctatc tcggaccacg      2160
     aggttgtgta cctgctttcg aacgtcagga tgccgcgatc tgccccgcag actgtgcgca      2220
     ctcgtaacct acgtgccatc gacccgatgc ggctgcaaat ggactttcaa gccagaaatc      2280
     tccaacctat cctcgaagcc gaggacacgt ccgcgaaagc agttctgctg aacggcgtac      2340
     taacggatct gctgcagcag cacgccccag agcgaaccat cgttgttcgc gataaacgaa      2400
     ccccctggat ctccgagacc atcaagcaag ctgtggcact gcgagacctg gcgtttgcgc      2460
     tctactcccg taaccccaac cgagtcagag gtgataacca gtggcaagac tacatccaga      2520
     aacgtgatcg tgcgaactcc ctcatctttg ccgccaagaa acgctacgct gatcaacatt      2580
     tcgacgccaa cctgccagct aaaacattgt ggtgtaatct gcggagagaa ggtattcaca      2640
     acaacgccaa gaagaaccaa gctaccgaag gaactgacgc cgacgaactg aacaagttct      2700
     tcagtgacgg tcatcgtcag ctgctaggag cacgccaaga gaatccagcc gaacccgcac      2760
     acagaacaga aatcgaccac ggtgcagatg aattcacttt tcgagccaca tccggcgaag      2820
     aaatctgtcg gaaaatctac gaaatccaga caaacgctac cggcccggac gatatcccga      2880
     tttctttcat caagctgttg tgtccatttg tgcttcccat ccttacgcat ctgttcaacg      2940
     aaattataat gaccaaagtg ttcccggagt gctggaaaaa ggccatcatc acccccattc      3000
     cgaagcagtc gaacccagcc cagccgaagg acttccggcc gatcagcgtt ctgccagcgg      3060
     tttcaaaagt gttggagaaa atattgctgt cgcagatcgc tgaacacctc gacaacccca      3120
     acgctcctct gttggctgga caacaatctg gttaccggaa aggacacagc acaaccaccg      3180
     cactagccaa ggtaacccac gacctgtacg agaatcttga caacggtcgc tgcaccgtaa      3240
     tggttctcgt ggatttctcc ctcgcgttca attgcgttaa gcaccaaaaa ttaagaacga      3300
     agctgcaaag cgaattccga ttctctcgag cggcgtgcga tctgatatcg tccttccttg      3360
     cgcgaaggaa acaatcggtt cggctcgcag acacattgtc aggagagcgc gatgtccccg      3420
     acggcacacc gcagggttcc tgcctcagcg cgttgctgtt tagcttatac ataaacagcc      3480
     tcccatcgac cctaaaatgc agctatcatc tttacgccga tgacctacaa gtttacacct      3540
     ccggtccatc tgctgatgtc gacacacttg tacgggccat caacgaagat cttgaggcga      3600
     tagcgcgctg ggcagacgca aactggcttg cgcccaaccc gaaaaaaacc caggcgatcg      3660
     ttttttgcaa gaccgggatc gtcgaaccac aaacaaacat caccttctgt ggacaaactg      3720
     ttccgctgtc ggagaccgta gtcaaccttg ggctcaaatt ggatcggaac ctgacgtgga      3780
     agcctcaagt gaacgatgtg gtgatgaaaa cgtacaatgt gctacgaact ttccgccggt      3840
     ttggctcggt actgtcaacg cagactagac tcaagttggt gcaagcggtg gtgatgccga      3900
     tcttctccta cggcgatatc atctacactc cgggcctgtc agctgcactg aaaggacagc      3960
     tgcatcgctg cttcaagtcg accgtacggt tcgtctacgg cctccgacga cgagacacaa      4020
     cagcggctgt tcgcgacaac atcctgggag tggatttgcc gtccaatcaa cgcctaagga      4080
     tctgctgctt catgcggcaa gcgtaccacg gcagccttcc cgagtacatc cagcagcacg      4140
     tgcagcgagg acaactggaa cgagcgcgct gtttcataat ccccagacac actacttcta      4200
     gtgggaaaag tgtactggtg tacggagcca cttgctggaa cggattgccg atcgaggcaa      4260
     agacaaaaac aaccctattt tcgtttaaaa gctgtgttaa acaactagtt taagcctt        4318
//
ID   Kiri-11_DTa repbase;    DNA;    INV; 4347 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.11, Created)
DT   30-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4347
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (30-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..1222
FT                 /product="Kiri-11_DTa_1p"
FT                 /translation="MVLPEGKRLKETSGAIHKRGRPSDATVDTTSPILIAA
FT                 MNSRFEEQAILIKATTREAEDRMLKVLQAKLLDVTTEMKQMADRLSLLEQE
FT                 VAELRPLKLQVGAVEGKLQAQRAETEACAVRMHGVPFVEGERLGSLFNKLC
FT                 FAVGLVPTPRVRDIFRARKMQSSLVDSPIIVRLETTREKVALLRALGTYRR
FT                 SNQQQLSIHLLGFDSPAALYVNEQLSRESFIIFKEAIRMKKHKTLSAVFTR
FT                 RGIVDVKCTGRDDVHIIQQIEELAAITPAESLSVSHCSLDKDKHIENQNFR
FT                 N"
FT   CDS           join(1469..1795,1799..2929,2887..4107)
FT                 /product="Kiri-11_DTa_2p"
FT                 /translation="FREIFVGSNVDVVCVSETWFVNGFSDVPFMCEGYELF
FT                 RSDRLSHAGGVAIYVSTKFSTRLIQANPLNSSFEYAFIEITDKKIKSQILV
FT                 CCIYRPHRLIPINDLLKTVLDSVEYQNFVLVGDLNSNMISEQHVHNEFASL
FT                 GLKLVNRHEPTHFTSTCSSLLDVFFVSDLSNVLLYDQLCVPPFSKHDLIFM
FT                 TYHFISDNPTSTFSYRDYKSINSDNLWAAFDTFDWTKIYNLTSAENQLSFL
FT                 NSNIQQLFDNCVPLKMKTRKPVEQPWFNRGIKRLIQQRDRAYSRWKRYRTE
FT                 ALNNTFKQLRSRVRNEISDSKTKFYNFKFGNAQSSTQVWKDLRNLGVGKPT
FT                 QVTKSDLDVDFLNEKFRHSQSPTSTLNMYLNSTTVCDNIFSFMCVSPSEVL
FT                 DSLLKVKSNAEGLDNLSPKFIKLLIPKIIFQISHIYNTIFTTSIFPDAWKI
FT                 AKIIPIPKAKNEFRPISILPFLAKAFERLVAQQIQTFQTTYATSSPANPNF
FT                 PNNILSSRQSGFKNNRSCTTAIIKISEDIRQQIDNSKVTLLTLLDFSKAFD
FT                 SINHSILCTKLRTLYNFSPSAIKLLDTYLTNRLQAVVSGSRRSDLVSVSQG
FT                 VPQGSGLGPLLFSIYINDLPKCLSDCDVHLYADDVQLYVSRPLNLVNECVS
FT                 ISNNEIKKINCWAEANGLRLNPTKTKCLIIYKIHRMHLPKVLVNNVEIEYV
FT                 EQATNLGTEFNTTLTWTNQIIKATGKTFGMLRQLSLSQKLIPQNIRMLVPV
FT                 LFYGMEIFSYCDALSMRRLRVAFNSIARYIFNLNRRDHITRHANNIFGLSF
FT                 ESWIKLRTLLFLHKVVISNEPPYLMEHLQLATSSRTNNLISKRIKLSIAEK
FT                 HFFVQAIRYWNDLPNNIKNLRNATQFKKDLTNFLKRTTSS"
XX
SQ   Sequence 4347 BP; 1363 A; 963 C; 787 G; 1234 T; 0 other;
     agtcataaag aaaggtcgtg ttttttctgc gctcgtctaa ggtctagttt tttcgcgttt        60
     gaataaactt ctactggaca aaagccttct caaatcttta tcctaccata ctagccggtc       120
     aatttgttca aaaaccatcg gacaacataa tattaaagcc gcaataataa aaacaatttt       180
     tgcctaatcg cgaccgcaca aacaccaact taattcagcg tccgcttgct ccaaaccact       240
     caacagagca aaacaaaaca ctcaaacaac aaggaagcgg accacaaaac aaaataaaat       300
     aaacgacact ggaaacaata gcaaaacttt tcgcactttt gagatggttc tgccggaagg       360
     aaaacgcctg aaggagacct ctggcgcaat ccacaagcga ggccgacctt cagatgctac       420
     cgtcgacacc acctccccaa tcttaatcgc ggcgatgaac agccgattcg aagaacaggc       480
     cattctgatc aaggccacca cgcgggaagc cgaggatcga atgctcaagg tgctacaggc       540
     aaaactgttg gatgtcacca ccgagatgaa gcagatggcc gatcgacttt cgctactgga       600
     gcaggaggtc gcagaactac ggccactgaa actccaagtt ggagccgtgg aaggaaaact       660
     ccaggcgcaa cgtgctgaaa ccgaggcatg tgcagtacgt atgcatgggg ttccttttgt       720
     tgaaggggaa aggcttggat cgctcttcaa caagctgtgc ttcgcggtgg gccttgtgcc       780
     aaccccaaga gttcgcgata ttttcagggc tcgaaaaatg caaagttcgc tggtcgattc       840
     tccaatcatt gttagattgg aaaccacgag ggaaaaggta gcccttctac gcgcactggg       900
     cacctaccgg cgatcaaatc aacaacaact gagcattcac ctgcttggtt ttgactcacc       960
     ggcagctctc tatgtaaatg agcagctttc gagagagagc tttatcattt ttaaagaagc      1020
     cattcgcatg aaaaagcata aaacactctc tgcggtgttt acgcgtcgtg ggatcgtgga      1080
     cgtgaagtgc actgggagag acgatgtgca catcattcag cagatcgaag agcttgctgc      1140
     gattactccc gctgaatccc tctctgtctc tcactgttcg cttgacaaag acaagcacat      1200
     tgagaatcag aactttcgga actaagtttt cccatagccc tcttctctct ttacctttag      1260
     ttcttaagag taaactatcc agtcaaatga ccatattagc tttaattgat gcttgtacct      1320
     ttcaaaccca tagatgcgtg ttccgtgtat ctttaaaatc aaacaatgca ggtccttcca      1380
     tatagccata tagcgagcag cctgcttaaa attttgagta atcaaaagga gggtcttaag      1440
     attgtccata taaatgctca aagcttagtt tagagaaata tttgttggtt ccaatgttga      1500
     cgttgtttgt gtttctgaaa cctggtttgt taacggattt agtgatgttc cttttatgtg      1560
     cgaaggttat gaattgttca gatccgatag gcttagtcat gccggtggcg tagccatcta      1620
     tgttagcaca aaattctcaa ccaggctcat tcaagcgaac cctttgaaca gcagttttga      1680
     atatgcgttt attgaaatca cagacaaaaa aattaagtca caaattctcg tatgctgtat      1740
     ctacagaccc catcgcctaa tccccatcaa tgaccttctg aagacggtct tagattaatc      1800
     cgttgaatat caaaactttg ttttggtagg ggaccttaat agtaatatga tcagtgaaca      1860
     acatgtacat aatgagtttg cgtctcttgg tcttaaactg gtaaatcgtc acgaacccac      1920
     tcacttcaca agtacctgca gctctctgtt agatgttttc tttgttagtg atttgtctaa      1980
     tgttctctta tacgaccaac tttgcgtccc accgttttct aagcacgatc tgattttcat      2040
     gacataccat tttatttctg acaacccaac atccactttc agctaccggg actacaagtc      2100
     tattaattct gacaacctat gggcagcttt tgacaccttt gattggacca aaatttataa      2160
     cttgacatcc gcagaaaacc aactctcatt tttaaattct aatattcaac agctatttga      2220
     caactgtgtc ccactcaaaa tgaaaactcg aaaaccagtc gaacagcctt ggttcaacag      2280
     gggaataaaa cggctaatcc aacagcggga ccgagcctat agtcgatgga aacggtacag      2340
     aacagaagcg ctgaataata cttttaaaca gttaagaagt cgtgttagga atgagatatc      2400
     cgactcaaaa acaaaattct ataactttaa atttggaaat gcacagagct cgacgcaggt      2460
     atggaaggat ttaagaaatc ttggagtggg caaaccaact caggtgacta aatccgacct      2520
     agatgttgat ttccttaatg aaaaatttag gcatagtcaa tccccgactt caacgctaaa      2580
     catgtacctg aactcgacaa ctgtctgtga taatatcttt agtttcatgt gtgtcagtcc      2640
     cagtgaagtt cttgattctt tgttaaaagt gaaatctaac gctgaagggt tggataattt      2700
     aagccctaaa ttcatcaaac tactgatccc aaaaataatt tttcaaatca gccacatata      2760
     caatacaatt tttactactt ccatctttcc tgacgcgtgg aaaatagcta aaatcatccc      2820
     gatcccaaaa gcgaaaaacg agttcaggcc tatttccatc ttgccatttt tagcaaaagc      2880
     ttttgagcga ctagtagccc agcaaatcca aactttccaa acaacatatt gagtagccgg      2940
     cagtcgggat tcaaaaataa caggagttgt acaacggcaa tcatcaagat ctcggaagat      3000
     atccgacaac aaattgataa tagtaaagta actctcctta ccctacttga cttcagcaaa      3060
     gccttcgact caatcaatca ctcaattcta tgtactaaac ttcgtacact atataacttt      3120
     tctccgagtg caataaaact tcttgacacc tacctgacca acagattaca ggctgtcgtt      3180
     tcaggatccc gtagatcaga tcttgtatca gtatctcagg gagtcccaca agggtcgggc      3240
     ttggggccgt tgctattctc aatatacata aatgatcttc ctaaatgtct gtccgattgt      3300
     gatgtccatt tatacgcaga tgatgtccaa ttatatgtta gtcgtcccct gaatctagtc      3360
     aacgaatgcg tttcaataag taataacgaa atcaagaaaa taaactgctg ggccgaagca      3420
     aatgggctga gattgaatcc aaccaagaca aagtgtctaa taatctataa gattcatcga      3480
     atgcatcttc ccaaagttct cgttaataac gtagaaatag agtatgttga gcaagccaca      3540
     aatttaggaa ccgaattcaa tacaacctta acttggacca atcaaatcat taaagctact      3600
     ggaaaaacgt ttggcatgct tagacagctc tccttatccc agaaacttat ccctcagaac      3660
     atcaggatgt tggtcccggt tctcttttac ggcatggaaa tcttttcata ctgtgatgct      3720
     ttaagcatgc gaagactcag agtagcgttt aattcgattg ctcgatacat ttttaacctg      3780
     aaccgtaggg accacattac aagacacgct aacaacatct ttggactaag ctttgagtca      3840
     tggattaaac ttagaaccct tctatttctc cacaaagtcg ttatatccaa cgaaccccct      3900
     tacttgatgg agcacttgca attggcaacg tcttctcgga ctaataattt aatttccaaa      3960
     aggataaagc tatcaatagc cgaaaaacat tttttcgtcc aggctatacg ctattggaat      4020
     gacctcccta ataatattaa aaacctaagg aacgcaacgc aatttaaaaa agatcttacc      4080
     aattttttga aacgcacaac atcatcataa tactacttac ttacttactt acttactatt      4140
     acactctatc tgtttaattt aaattattta atgttaaacg taactatttt tctttgttta      4200
     ttttgtattc ctctttatta attttgtatt accttttaag ttttgtaaaa taccctatta      4260
     ttaatttttc caaagtaacc gatgtaataa tttataagac ctagtcttgt cgcatcggga      4320
     taaatcaaat aaataaatta aattaaa                                          4347
//
ID   Kiri-12_AAe repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-12_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4284
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 707-707 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           315..1118
FT                 /product="Kiri-12_AAe_1p"
FT                 /translation="MSLHRTPPSDKSNENIAKRIRSDGDVHEVPQPLTLEA
FT                 VMQAMNHQFAQTLARIEEISVNISGKIDTVKADLDGKLEAVLHDINSFKAD
FT                 CNAKLKSNEDALCALDERVGAISQDIDNLQNRNELIVSGIPYLKDENLISY
FT                 FNAMWKYLDLQKGSIPSVDVRRLRPSTQNDGLIVLQFALRNDRDDFYSGYL
FT                 HKRDLKLCHLGIDSSRRVYVNENLTVAARKIKATALRLKKAGKLSTVYTKL
FT                 GTVMVRRSVDQPPVAVHSDVLLDQFLS"
FT   CDS           1291..4143
FT                 /product="Kiri-12_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMPSLPNHTSMNIPGAVMNAVLPPGKLNVCHGNAQSL
FT                 CARNSSKLEEVKDLLRNSRVSVARFTESWLSARNSNRSISISGFSAIRNDR
FT                 IYRRGGGIVVYYKNHLCCSPIFSTKLSSESEDKTECLAVELRLGSDKILIV
FT                 VVYNPPDNNCTKFLADKLTDFATRYDNILLIGDLNIDLSKPSSKRAQFEYM
FT                 LENFALFSVGEEPTYFHKDGCSHLDLFITSCYDKVLRFNQVGFPGLSQHDL
FT                 IFGSLDFDANPVPSMNTYRDYVNFEARTLQNAILSVPWDTFYEMHDPNELV
FT                 DFFNSNVKRIHDDCIPLRTSKKHKSSNLWFNNEIRKAMLERDLAYTDWIRA
FT                 PTTTKDQARRRYNALRNKTNSMVVAAKNQYLNRFLDSRVPPKELWKRLKGI
FT                 GVGKDKSSTVCEFHPDDVNRIFLSSCVQCDHNSNPRNSSSNSPYSFSFRQV
FT                 EYWEVVNAVCSIKSNATGMDGLPIKFIKIILPLIVQQVTHMFNCIIETSTF
FT                 PSCWKHAKVLPLRKKPHVNALTNLRPISILCALSKAFEKLLKQQMSSYITV
FT                 NNLLTEHQAGFRKGQSIQTAVVHVYDELAKAVDKRGTGVLLLLDFSKAFDT
FT                 IPHRKLCSKLETQFNFAGTAVELISSYLKERMQTVYCGNQQSERGFLTSGV
FT                 PQGSVLGPLLFCCHINDLPTVLKYCSIQLYADDVQLYICRLGPCTRDLISM
FT                 VNMDLERITEWSQRNQLFVNQSKSKAMLVKNRRRNTVQTELLPLISMAGQT
FT                 IEWTESAANLGFTFQSDLQWEGLVNQQCGKIYACLRSLYSCSSGAPISTRL
FT                 KLFKALILPHFMFGELLHGRSCAYSMDRLRVALNSCVRFVYGLNRYAHVSH
FT                 LQRNLIGCPFENFYAHRSCVFLYKLVKTNTPPILHQKLLPFRGRRLQNLMI
FT                 PPNNSMCYSNSLFVRGVVYYNMLPPAVKCSTSEAVFKRGCLEFWNRM"
XX
SQ   Sequence 4284 BP; 1213 A; 944 C; 933 G; 1194 T; 0 other;
     gaaaattctg gcaacactgg cgctactatg tgttgtgaat agtggctcag ctaagcaaat        60
     tcgcgttagt ggaatgtaat cgtttttttt aatatctcga aggaatccca gtaaagtcct       120
     gagtgtcttc cgcgatcgtg tacgtgttat ccagttccgc cgtattgtat ctggaccaat       180
     aaaacagttg caaaatcctg agccatatgc cgacattgtt ctgtgcatct acaagcttgc       240
     cataaaacga tcagtgtgag gtctctttca tacctacaca ttgcgctcct cgataaacac       300
     agtacgaaac aaaaatgtcg ctacatcgta ctccaccaag tgacaagagc aacgaaaaca       360
     ttgctaagcg catacgatcg gatggcgatg ttcatgaagt cccccagcct ttgacgttgg       420
     aggccgtaat gcaagctatg aaccatcagt ttgcgcagac actagcacgg atcgaggaaa       480
     ttagtgtcaa catcagcgga aaaatagaca cagtaaaagc tgatctagat gggaaacttg       540
     aagctgttct ccacgacatc aactccttca aggcggactg caatgctaag ctcaaaagca       600
     acgaagatgc actgtgtgct ctcgacgaaa gagtgggcgc tatatcgcag gatatcgaca       660
     atctccaaaa caggaacgag ctaattgtga gtggtatccc gtatctcaag gacgaaaatc       720
     tgatatctta tttcaacgca atgtggaagt acttagatct gcagaaggga tccattccat       780
     ctgtcgacgt acggagattg agaccgagca ctcaaaacga tggtctaatt gtattacaat       840
     ttgcgctacg aaatgaccgt gacgacttct acagcggcta tttacataag cgagatctaa       900
     agctgtgcca tctgggaatc gattcttcaa ggcgagttta tgtgaacgag aacctgactg       960
     tcgctgcacg caaaataaag gcaacagcat tgcggctgaa gaaagctggg aaactatcaa      1020
     cggtgtacac gaagctgggg acagtcatgg tgaggcgctc cgtcgatcag ccgcctgtgg      1080
     ccgtgcactc ggatgtactg ctggatcagt ttcttagcta agtaatcgag tttatgtcat      1140
     cgtccacttt cgttatttgt taatgtgtat tgaatattgt atttggtttt gtaaattgtg      1200
     attgtacgaa gactgttata gtagcaaaat accaatgtcg tctattgtag tttattcaca      1260
     gccccctaaa aactgcttcc cttttttcac atgatgccat cgttaccaaa ccacacctca      1320
     atgaacattc ctggtgcagt aatgaatgcc gttctccctc ctggaaagct gaacgtttgc      1380
     catggaaatg ctcagagtct atgtgcacga aactcatcca agttggaaga agtgaaggat      1440
     ctcctgcgta actctagagt atcggttgca cgtttcactg aatcctggct ttcagcaagg      1500
     aacagcaatc gcagtatctc tatctctggt ttttctgcaa ttcgcaatga tcgtatatat      1560
     cgacgtggag gtggaattgt agtttactac aagaatcatt tgtgctgttc tccgatcttc      1620
     agtacgaaat tgtcatccga atcagaagac aaaactgagt gtctggccgt ggagttgcga      1680
     ttaggcagcg ataaaatcct gattgtggta gtctacaatc ctccagataa caactgcaca      1740
     aaattcctcg cagacaaact gacggatttc gccacgcgtt acgacaatat tctgctaatt      1800
     ggagacttga acatcgattt gtctaagccg agcagcaaac gtgcacagtt tgagtatatg      1860
     ctagaaaatt tcgctttgtt ctcggtgggt gaggaaccta cgtatttcca taaagatggt      1920
     tgctcgcatt tagacctgtt tattacaagc tgctacgata aagtgctgcg ctttaatcaa      1980
     gttggcttcc ctgggctatc ccagcacgac ttgatcttcg gctccctaga cttcgacgca      2040
     aaccctgttc caagtatgaa tacgtatcgt gattacgtca actttgaagc cagaacactg      2100
     caaaacgcta ttctttccgt tccttgggat actttctacg aaatgcacga tccaaatgag      2160
     ctggtcgact ttttcaactc caatgtgaaa cgcattcatg atgactgcat cccacttcgt      2220
     accagtaaga aacacaagtc atcaaactta tggttcaaca acgaaatccg taaggctatg      2280
     ttggaacgtg atttggccta taccgactgg attagagcac cgactacaac caaggatcaa      2340
     gcgcgacgcc gttataacgc tttgaggaat aaaacaaact cgatggttgt ggctgcaaaa      2400
     aaccaatacc tcaatcgatt cttggacagc cgagtcccgc cgaaagagct gtggaagcga      2460
     ctcaaaggaa ttggcgtagg aaaagataaa tcatcaaccg tttgtgagtt tcacccagac      2520
     gatgtgaatc gcatatttct ttcaagctgt gttcaatgcg atcataatag caatccgaga      2580
     aattcatcgt ccaactcgcc ctacagtttc tcgttccggc aagtggagta ctgggaagta      2640
     gttaatgccg tgtgtagcat aaaatccaat gcaacgggca tggatggctt gccgatcaaa      2700
     ttcataaaaa tcatccttcc gttgatcgtg caacaagtta cccatatgtt caactgtatt      2760
     attgaaacgt ctacttttcc gtcgtgctgg aaacacgcta aagttttgcc gctgcgaaaa      2820
     aagcctcatg ttaatgcgtt gacgaacctc agaccaatta gtattttgtg tgcactatcg      2880
     aaggcatttg agaaactcct gaagcaacag atgtcatcct acattactgt aaacaatttg      2940
     ttaacagaac atcaagccgg ttttcgtaaa gggcaaagca tccaaacagc cgttgtccac      3000
     gtttatgacg aattggcaaa agctgttgat aagagaggaa ctggcgtatt actgctgctt      3060
     gatttttcca aggctttcga tactattcct caccgaaaac tctgctcgaa gttggaaact      3120
     cagtttaact ttgctggtac agctgttgag cttataagtt cctatttgaa agagcgaatg      3180
     cagactgtgt actgtgggaa ccaacaatcc gaacgtggct ttttaacgtc tggtgttcct      3240
     caagggtcgg tgcttggacc tttattattc tgctgtcata tcaacgattt gcctaccgtc      3300
     ctaaaatact gttcgataca actgtatgca gacgatgtac agttgtatat ctgtcgcctt      3360
     ggtccctgta ctcgcgatct catcagtatg gtgaatatgg acctcgagag aatcacggaa      3420
     tggtctcaac gaaatcagct ttttgttaac caatcaaaaa gcaaagcaat gctggtaaag      3480
     aatcgacgga gaaacaccgt tcaaacggag ttgctgcctc ttatcagtat ggctgggcag      3540
     actatagagt ggacggaaag tgctgccaat cttggattca cctttcaatc agacctgcag      3600
     tgggaaggcc ttgtgaatca gcaatgtgga aaaatttacg catgcctcag atcgctctat      3660
     tcttgttctt ctggagctcc tattagtaca cgtctgaaac tgttcaaagc actcattctt      3720
     ccgcacttca tgttcggcga actacttcat ggcagatcct gcgcctattc tatggacagg      3780
     ctacgtgtcg cattgaattc ctgcgtacgt ttcgtttatg ggctgaaccg ctacgcgcac      3840
     gttagtcatt tgcaaaggaa cttgatcggc tgcccatttg aaaacttcta tgctcaccgt      3900
     tcttgtgtgt tcctgtataa gttggtgaaa acgaacactc cgccaatact ccatcaaaag      3960
     ttgttgccgt tccgaggacg tcgcttgcag aatttgatga tccctcccaa taactcaatg      4020
     tgctattcca actcgttatt tgttcgaggt gtggtttatt ataatatgct tcctcctgcg      4080
     gtcaaatgct cgacatcaga agcagttttt aaaaggggct gtctagagtt ttggaaccgt      4140
     atgtaatgtg aatattgtag aatgtaagag tagtttatat gttagttttt aagtttttat      4200
     tgtatttgac tcgttaaaaa cgcaggtggt aaacaaaaaa aggtttcctt tacgccactg      4260
     gaaataaaca aacaaacaaa caaa                                             4284
//
ID   Kiri-12_DTa repbase;    DNA;    INV; 4408 BP.
XX
AC   .
XX
DT   30-AUG-2021 (Rel. 26.11, Created)
DT   30-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4408
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (30-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           405..1322
FT                 /product="Kiri-12_DTa_1p"
FT                 /translation="MSANKRLRVATSPDQRATRLSDATSAKMLQLMDARFD
FT                 EQKKILGKEFRESEARFLSSLQEKFQAMTEEIHTLTQRVSQLENEVKVVAE
FT                 LKQQVHDLTGKLAAPNTAGGLVDQPKQQVGDLDARLAAKCVAEEDAAVSCT
FT                 LRWHGVPQAEGENLKTLFNRLCFSLHLTPPPLVRSIYRVRPRQTGQTLVDP
FT                 IIHIKMEHVREKATLLRAIGAYRRTTKTQLSLQLIGLESPALIYINEQLTK
FT                 HNYEVFKRAMHLKKHKRLTAVFTRRGDVFVKMIDGVEAHNVRSLHELSELS
FT                 NNLGGPSRNSSFRD"
FT   CDS           join(1396..1485,1467..3104,3074..3268,3272..3844,
FT                 3769..4215)
FT                 /product="Kiri-12_DTa_2p"
FT                 /translation="MFSVMFYQFNFSYLVREQLIILFKFWKWKTILEMEDL
FT                 NEVNSHTLLRILTKQRAGLKVCHINAQSLPRKVDEFKYLFVNSGLDIICVS
FT                 ETWLGDNVCDVIISCDGYNVYRADRVSHGGGVAIYVSKKLVSKFICKHPDS
FT                 SPIEYLFLEIKNQSSQKKMLLGCIYRPRSSINYDDILNKLSDISINYEDIL
FT                 LAGDLNSNILREEHLKINMESLGLNLVNSTYPTHFSRTCSSLLDVFFVSDV
FT                 EKICLYDQLIVPSFSKHDLIYLTYNFDLQYNDEEIVFRDFNNIDYYLLNTE
FT                 LDKCNWNNIYCLPDVDEQLSLLQRNISYLYNCFVPIKSKPIKHFIKPWFNN
FT                 EIKSAIQKRNFAYQKWKRYKTPPHYAQFKSLRHTVTKLIDTAKSKFYFRKF
FT                 KNSTSSRQTWKEIKSLGIGKQKSTPGQDVNVEELNQQLSKCNVPEIDDSKL
FT                 YLNSVPENFCDNSFRFVCVNQYEVLVNILKIKSDAIGLDEINPKFIKLILP
FT                 KILTYITHIFNTAFTTSAFPDCWKIAKIIPIMKANKEYRPISILPFLSKAF
FT                 ENIMSGQINAYIGDNALLNNNQLGFRIKSQQPIGIQNKILKISDDIRKHAD
FT                 KSNVTLLVLLDYSKAFDSVNHEVLCSKLKTQFNFSTTSVKLMTDLKNRWQS
FT                 VVISNVSSSLVVLKRGVPQGSVLGPLLFTLYVNDLPCVLSNSDVHMYADDV
FT                 QMYVSRPISRINECVNICNRELDKISSWAKDNGLGLNPTKSKCLVIYKKKV
FT                 NIADLQPLLINGMPIKYVENATNLGIIFNNKLSWNDHINKAIGKTYGLLRS
FT                 LCPVKSLLPINVRMLIAKFFQIAMQPAIKKKSVTHKCSYVNCQIFSNCDAA
FT                 SHQKIKVAYNNIARFIFNLRRFDHVTNYAYRIFELNLTDWMKLRVLIYLHK
FT                 IIYTREPTYLFEVLRFTSSRRANNIIQVRHRSLLSERQFFVHAIRLWNQLP
FT                 NTLKNISSATQFKSKLTLHLQDTSTI"
XX
SQ   Sequence 4408 BP; 1538 A; 854 C; 791 G; 1225 T; 0 other;
     actatgcaag ctgtgggcat ttttcgtttt tctcaaaatt aaaaaagaga gagagaaagt        60
     cgcaaatcct agagctcctc ggaatttcgg cttaaatcac aagaaatacg cttaataaat       120
     catcaaattt ccaacaacaa ccgcgtacgc ctgcgcgtaa caccgattca gtgcacataa       180
     aacaattgaa cttcaaataa acaaattaaa atacattttc tagaggcaaa aagtgcagtg       240
     aaataaatta caacactcac tcaaacgaac cacttacaaa cagcatagaa gaaataaccg       300
     taatacagtc aaacgcaata gaaacagaat aaaaccactc agaaacaaac gaaaaatcac       360
     tcaactctca ataaatagac acataacaaa ataaaaacca caacatgtcg gcgaataaac       420
     gtctgcgggt tgcaacaagc cctgatcaga gggcgacccg cttgtcggat gcaacatccg       480
     ccaagatgct ccagctgatg gatgccagat ttgatgagca gaagaaaatc ttgggcaagg       540
     agtttcgaga gagcgaggca cgtttcctca gctctctcca ggagaagttc caggcgatga       600
     ccgaagaaat ccacactctc actcaacgtg tgagccagct ggagaatgag gtaaaggtgg       660
     tagctgagct gaagcagcag gtccacgact tgaccggcaa attggcggca ccaaacactg       720
     ctggaggttt ggtcgatcag ccgaagcaac aggttggtga cttggatgcc agactggcag       780
     ccaaatgtgt agcagaggaa gacgcagcgg tctcatgtac cttgcgctgg catggggtac       840
     cgcaagcgga gggagaaaat ctcaaaacgc ttttcaaccg gctctgtttt tcactccatt       900
     taactccgcc tccactggtg agatccatct acagagtgcg gccccgacaa accggccaaa       960
     cacttgtaga cccaattatc cacataaaga tggaacacgt gcgcgaaaaa gcgacgttac      1020
     tacgagcaat aggggcatac cggcgaacta caaaaacaca actgagctta cagctaattg      1080
     gtctggagtc gccagcactg atctacataa atgagcagct gacaaagcat aattacgagg      1140
     tcttcaagag agcaatgcat ctcaaaaagc acaagcgcct cacagctgtc tttactcgcc      1200
     gtggagatgt ctttgtaaag atgatcgacg gagtggaagc tcacaatgtg cggagcttgc      1260
     acgagctttc tgagctgagc aacaatttgg gaggcccgtc gagaaatagt tcatttcgag      1320
     attagtttta aacgcagatc catagtttta gtatttgtta gattagaaat tattgtaggt      1380
     cgctttgttt acttaatgtt ctccgtgatg ttttatcaat ttaatttttc atacctagtg      1440
     cgtgagcagc taataatttt atttaaattt tggaaatgga agacctaaac gaagtaaata      1500
     gccataccct attgcgcata ctgacaaagc agagagctgg gcttaaagtt tgtcacatta      1560
     atgctcaaag tttgccgaga aaagtcgatg agtttaaata tttatttgta aattctggtc      1620
     tagatattat atgtgtctct gaaacatggc ttggcgataa tgtttgtgat gttataattt      1680
     cgtgtgatgg ctataatgtt taccgagcgg accgtgtcag tcatggaggt ggggtagcaa      1740
     tttatgttag taaaaaatta gtgtccaagt ttatatgtaa acatcccgat agcagcccaa      1800
     tagaatactt attccttgaa attaaaaatc agtcctcaca aaaaaaaatg ctgctgggtt      1860
     gcatataccg cccacgtagt agcattaact atgacgatat tttaaataag ctatcagaca      1920
     tctctataaa ttatgaagat atacttttag cgggtgatct caacagcaac atacttcggg      1980
     aagaacacct taaaattaac atggaatcac taggcttgaa tcttgtaaac tccacttatc      2040
     cgactcattt cagcagaaca tgcagctcat tgttagatgt attttttgtt agtgatgttg      2100
     aaaaaatatg tttgtatgac caactcattg tgccgtcgtt ctcaaaacat gaccttatat      2160
     acttgaccta taattttgac cttcagtata atgacgaaga aatagtattt agggatttta      2220
     ataatataga ctattacctt ctaaataccg aactcgataa atgcaactgg aataacattt      2280
     actgtcttcc agatgtagac gaacaactca gtttgctcca acgtaatatt agttacctgt      2340
     acaattgttt cgttccaatc aaaagtaaac ccattaaaca ttttattaaa ccgtggttta      2400
     ataatgaaat taagtcagca atacaaaagc gaaactttgc atatcaaaag tggaaaaggt      2460
     ataagactcc gccacattat gcccaattta aatcattgag acacacagtc actaaactta      2520
     ttgacaccgc aaagtcaaaa ttctattttc gaaaattcaa aaactcaaca tcgtctagac      2580
     aaacctggaa agaaatcaag tcactaggga taggaaaaca aaaatcaacg ccgggacagg      2640
     atgttaatgt tgaagagctg aaccaacaac tctcaaaatg caatgtacct gaaatcgacg      2700
     atagcaagtt gtacctgaat tcagtacctg aaaatttctg tgataatagt tttagatttg      2760
     tttgtgttaa tcagtacgaa gttcttgtca atattcttaa aattaaatca gacgcaattg      2820
     gactagacga aataaatcct aaattcatta aattaatact tcccaaaatt cttacataca      2880
     taactcacat ttttaacact gcatttacaa catccgcatt tcctgactgt tggaaaatcg      2940
     caaaaattat accaattatg aaagccaaca aggaatatag acctatatca attctaccgt      3000
     tcttatcgaa agcctttgag aacattatgt caggtcaaat aaacgcatat ataggtgata      3060
     atgctctact taacaacaac caattgggat tcagaataaa atcctaaaaa tctctgacga      3120
     tatacgtaaa catgcagaca aatccaacgt gacgcttcta gtacttcttg actatagtaa      3180
     agcttttgac tctgttaatc atgaagtttt gtgttcaaaa ttgaaaactc agttcaattt      3240
     ctcaacaact tctgtcaaac ttatgaccta ggacctaaaa aatcgctggc agtctgtagt      3300
     aatatcaaat gtttcgtctt ctcttgtagt ccttaaacgt ggtgtgcctc aaggctcagt      3360
     tcttggtcct ttactgttta ctctatatgt caatgacctt ccctgtgtgt tgtcaaatag      3420
     tgatgttcac atgtacgccg atgatgtcca gatgtatgtt agccgtccca ttagtagaat      3480
     taacgagtgt gtgaatattt gtaatcgaga gcttgataaa attagcagct gggccaaaga      3540
     caatggcctt ggtctaaacc caacaaaatc taaatgtctc gtaatttata aaaagaaagt      3600
     aaatattgct gacctgcagc cattgttgat aaacggcatg cccattaaat atgttgaaaa      3660
     tgctacaaac ttgggtatca tattcaataa taaacttagt tggaatgacc atataaataa      3720
     agctataggg aaaacgtacg gtttactaag atctctctgt cctgttaaaa gtctgttacc      3780
     cataaatgtt cgtatgttaa ttgccaaatt ttttcaaatt gcgatgcagc cagccatcaa      3840
     aaaataaaag ttgcatataa taatatagca agatttatat tcaatctacg tcgatttgac      3900
     catgtgacaa actatgcata tagaatattt gaacttaatt tgacagactg gatgaagctg      3960
     agagttttaa tatatctgca caaaataatt tacacgaggg aaccaaccta tctctttgaa      4020
     gtattaagat tcacttcctc aagaagagca aataacataa ttcaagtaag acacagatct      4080
     ctactttctg aaaggcagtt ttttgtacac gcaataaggc tatggaacca gctcccaaac      4140
     actttaaaaa atattagtag cgccacgcag tttaagtcaa aactcacatt acacctacaa      4200
     gatactagca caatataaaa aaaaaaaaaa aaaaaaaaaa acaaagcgac ccttttcctt      4260
     aaccaataat gtttaagcgt aatcttaaga atttcatcta tctgtactta tgagtaattt      4320
     gtcctacgtg actatcgcac taattataag ttataaactt gtagcgttag gaaagcattt      4380
     taaaataaat taaattaaat taaaatta                                         4408
//
ID   Kiri-12_HMM repbase;    DNA;    INV; 2504 BP.
XX
AC   .
XX
DT   26-FEB-2013 (Rel. 19.10, Created)
DT   26-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-12_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2504
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2811-2811 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2097
FT                 /product="Kiri-12_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="GMDLNCLREDAAAIDWSSVLICTEADDQLALFNSHIX
FT                 KLYDHHAPLRPVRIKHYPAPXLTDKIXKLQHKKNTAKMKLKENPNDTNRQX
FT                 YNKARNRCNMMCRDNQRRHIHKSVIEEKDSYKVWNFLKSIGVGKAKQFINP
FT                 XNINLNELNRHFSSSCVINNATKLSTINHLNALSTPXVPSFFFSLFAESDV
FT                 KKTILATKSDAVGADGISRKMISPILDILLPVITCIFNHSIXSKQFPSIWK
FT                 DAQIIPLPKKPNPVDFSDYRPISILPFLSKVLERLIQTQLTQFLYQHNLMN
FT                 PLQSGFRPGHSTTTALVKITDDIRSGMDRQQVTVLALLDFSNAFGSVDFDI
FT                 MLATLKSLNISPDAINWLREYLYGRRQRLRIQDSYSDWTPVVAGVPQGGVL
FT                 SPLLFSMFINTISGTISSLYHLYADDLQIYNQAKISDLPTAIKDINNSLES
FT                 ISSWSKSFGLHLNSKKTQLILIGSSKLISKIDVSTLPPVLINSDIIPFSKT
FT                 VKDLGITLDNNMSWDSQVSEVSRKIFASLGSLRRLRNFLPILTKISLANTL
FT                 LLPILDYADTCYLDLREEQLNKLERIQNLCIRFIFGLRKFDHISDFRKKLK
FT                 WLPIRLRRNTHILHLLYCILFNPISPPYLKERFEFLGETHSRSLRSGRNLI
FT                 LKIPSHTSSFYSSSFTVTACRLWNALPLVVRNAKTFLTFKRRLKLHFMSL"
XX
SQ   Sequence 2504 BP; 711 A; 501 C; 381 G; 898 T; 13 other;
     ggtatggatt taaattgctt gcgtgaggac gcggctgcaa tcgattggtc gagtgtacta        60
     atctgtactg aagctgatga tcagctggct cttttcaatt cgcacatawt aaaattatat       120
     gatcatcatg ctccattgcg tcccgtacga ataaaacatt atcctgctcc ttgkctaaca       180
     gacaaaatta waaagctgca acataaaaag aatactgcwa aaatgaaact caaagaaaat       240
     cctaatgata ccaatcggca aaaktacaac aaagctcgca atcgctgtaa tatgatgtgt       300
     agagataacc aacgacgcca tatacacaaa tctgtaatag aggaaaaaga ctcatataaa       360
     gtttggaatt ttttaaaatc tatcggagtt ggaaaagcga aacaatttat aaatcccaak       420
     aatatcaatt taaatgaact taatagacat ttctcttctt cctgtgttat taataacgca       480
     acaaaattat ctactattaa ccatctcaat gctttatcca ctccwkgtgt tcctagtttt       540
     ttctttagtt tatttgcaga aagtgatgtt aagaagacaa ttttagccac taaatctgat       600
     gctgtcggtg ctgacggcat tagtcgsaaa atgatcagtc ccatcctcga tatcttatta       660
     cctgtgatta catgtatatt taatcactct atatsmtcwa agcaatttcc ttcaatatgg       720
     aaagatgcac aaataattcc tttacccaaa aaacctaatc ctgttgattt ctctgattac       780
     cgtcctattt ctattcttcc tttcctatcc aaagtccttg agcgcttaat tcagacccaa       840
     ctcactcagt tcctttacca acataacctt atgaaccctt tgcaatccgg tttccgtcct       900
     ggtcatagta cgacaacggc attagtaaaa attactgatg acattcgttc tggcatggat       960
     aggcaacaag tcacagtctt ggcgttgctg gacttcagca atgcctttgg ctccgttgac      1020
     tttgatatca tgctggctac tttaaagtca cttaacatat ctcctgatgc aattaactgg      1080
     cttcgtgaat acctgtacgg acgtcggcaa cgtttgcgaa tacaagattc gtactctgat      1140
     tggactcctg tcgttgctgg tgttccgcag ggtggcgtgt tgtctccttt gctattttct      1200
     atgtttatta atactatttc tggtactatt tcttctctct accatttata tgcagacgat      1260
     ttgcagatat acaatcaagc taaaatatcg gacttaccca ccgcaatcaa ggacattaac      1320
     aatagcttgg agagtatatc ttcttggagt aagtcatttg gtctacatct taactcaaaa      1380
     aaaactcaac tgattttaat tggtagttca aaacttattt caaaaataga tgtatcgact      1440
     ttaccacccg tacttattaa tagtgacatt ataccattca gcaaaactgt aaaagatctt      1500
     ggtatcactc tggataataa tatgtcttgg gattcacagg taagtgaggt tagcagaaag      1560
     atatttgcat ccttaggttc tcttagacgt ttgcgtaatt ttcttcctat acttactaag      1620
     atttcgttag caaatactct ccttctaccg attcttgatt atgctgacac ttgctatctt      1680
     gacttaagag aggagcaatt aaataaactt gagcgtattc aaaatttatg tattcggttc      1740
     atatttggcc tacgcaaatt tgatcacatc tctgatttcc gtaaaaaact caagtggctc      1800
     cctatccgcc ttcgcaggaa tactcacatc cttcatcttc tttactgtat tctgttcaat      1860
     ccaatttccc ctccttacct taaagaacgt tttgagtttt tgggcgagac acattctcgc      1920
     tctcttcgct ctggacgtaa tcttatcctc aaaatacctt ctcacacttc ttccttctac      1980
     agcagttcat ttactgtaac agcgtgtagg ttgtggaacg cccttccttt agtggtcaga      2040
     aatgccaaaa catttctaac cttcaagcgt cgtttaaagt tacacttcat gtcactttaa      2100
     gacttaggtt cttttccttt ttttttcttt tttttcttct gccattacac attttattct      2160
     taccatttag ttcttatctt tatctatgta tgtatgtagt ttatatgtat atgtgtattt      2220
     atttgtatgt atgtatattg atacggctat atttatttac gtatgctttg tatgtgttat      2280
     ktatggtaaa tatattctta tttattttat acccttaatt atatatatat atattttttt      2340
     tttgcaccct acccatatct taatttgcta tttcctctgc cttaaggttg cctggcagaa      2400
     attgctatta agcaataagg ccgccttttg tacatttata taattttatt gtattttttt      2460
     gtgtcttttc ctgggtgtac aataaagagt tattattatt atta                       2504
//
ID   Kiri-13_AAe repbase;    DNA;    INV; 4404 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-13_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4404
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 708-708 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..969
FT                 /product="Kiri-13_AAe_1p"
FT                 /translation="MNSHHSRQMNHKTTTTINCAERDSXGKIGIRNCEQFL
FT                 LQMKLLFXEXDRRIDAALASYMHTVRDKPSEQSSDDVANIMIESPPDSVSM
FT                 RIDAEEGTVNNDLSNDASDSILHLSTIQQSVGFCRESSTNPSVSTAPRTWY
FT                 NCCYYRRRGARKSLTASSFLFRGHLLGTCSRRRLACRKFYLSHRRSGLQAV
FT                 FKDAERFVGDRISIHNVLAIHPSKNIHLPCSIYPMNPSQQYP"
FT   CDS           1400..4249
FT                 /product="Kiri-13_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPVESVHGNARTNEGFSHIPRAVMHSALSSNNINICH
FT                 VNIQSLCARQMSKFEEFKMCFVNSKIDLMCLTETWLSDEVSSELVAVDGYK
FT                 LYRNDRGYSRGGGIGIYCKNDLRCNILSASELFVGMGDIDRTEYLFAEICY
FT                 NADKFLLGVIYNPPRGDCAEKLEQKLFELSLQFQNIVLIGDFNTDFSKPST
FT                 KRSRMQAVFDNFGFQCVSREPTHFYSGGCSLIDLLLTNNDDFVFNFNQVSV
FT                 SGFSKHDMIFAALNIARRESIVPSFFRDYKRIDNVSLQNALNNINWDTLYS
FT                 IDDPDIALNLLNAHLLHLFDSFVPVRLVKKSNNKKWFNNDIMHAMIERDLA
FT                 YRSWVANKNEQNHCQYKRLRNRVTHLINVAKVNYVSSTLSGNSSSKQLWSK
FT                 LKNLNITKPTESDPQYSNSKEEINNFFASNFSNDSSHVPLLSSNSNGFSFC
FT                 LTNEHEVINAIGSIKSNALGLDGIPIKFVKYILPLIVTQITYIFNLIIKTS
FT                 KYPRTWKIVKIIPISKKAGKTDLNNLRPISILCALSKAFEKILKYQMRSFL
FT                 DNFQLLSPYQSGFRSSHNTTSALLNVHDDIHSHIDKKGVAFLMLLDFSKAF
FT                 DRVSHRKLLLKLSRKFFFSNSALSLIKSYLVDRQQSVCIGGQNSSLINIVS
FT                 GVPQGSVLGPILFTMFINDLPSVLKHCKIHLFADDVQVYFFSSDLSLQEMA
FT                 SLINSDLSNIFGWSERNLLPLNASKSRAMFISRSRHPPDLPTIKLGNEELE
FT                 YVNKFSNLGIILQNDLEWEGHVNSQCSKIYNGLRTLRITANMLPCDVKLKL
FT                 FKSLLLPHFSYGCELLLNASARAIDRLRVALNCCIRWIFNLSRYSRVTQYH
FT                 NQLLGCSFYNFFKLRSCLVLYKIINDEKPPYLFQKLQPFHGTRHRNFRLIH
FT                 YNTSHYGGTFFVRGIVHWNQLPPAIKSLRNLQSFRREVTAWFATRN"
XX
SQ   Sequence 4404 BP; 1324 A; 820 C; 811 G; 1443 T; 6 other;
     tactcgggat gtactcttat agtgagtgaa atttgtggtc ctagttcagt tgaggttttc        60
     gacctgtttt actacttttt tcgtcgctaa tcatcgctta tgaaacagac ccagtactga       120
     ggcgagcggt ctatataaag tgcaccttkt tgatcttaaa ttgaccggtg ttttcgagga       180
     atttcgttgg tgcagtccaa gtaatcccga gtggcattgg cagccatcat tgagttggaa       240
     ttacaacagt ttgttcatca acctgtcact acgatgaatt cacaccactc acggcagatg       300
     aaccacaaaa caacaacaac aatcaactgt gccgaacgtg attccwttgg taaaattggg       360
     atcagaaatt gtgaacaatt tctactgcaa atgaagctct tgttcgwcga aamcgatcgw       420
     aggattgatg ccgctcttgc atcctacatg catacagtgc gtgacaagcc aagcgagcaa       480
     tcaagtgatg atgttgcaaa cataatgata gagtctcctc ctgattccgt ctctatgagg       540
     attgatgctg aagaaggtac tgtcaacaac gatctctcaa atgatgcctc cgatagtatt       600
     ctccacttgt ccacgattca acaaagcgtc ggcttctgca gagaatcttc tacgaatccc       660
     agtgtttcta cggctcctag aacttggtac aactgctgtt attaccgacg tcgtggtgca       720
     agaaaaagct taactgcgtc atcgttttta ttccgaggac atctgctggg tacctgtagt       780
     cgaagaagac ttgcttgtcg aaagttctat ctttctcatc gaagatccgg gttgcaagct       840
     gtctttaagg atgctgagag atttgtagga gaccgtattt caattcataa tgtgctcgca       900
     atacacccat ccaaaaacat tcatcttcct tgctcgattt atcctatgaa tccatcccag       960
     caatatccat gaatattccc ctcctgaaag ttataccttt ccaacatagt tattgattaa      1020
     tcctactctc gaaattccgt gcttccaatc ctaatgctat ccatgttacc ttccatccta      1080
     aaagttatgg gggggtaagg gaatagtatg acaactcaat tgctgttggc gctgctggtg      1140
     ttgttgctaa tgatgctgtt atgttgcttg ttcctgctgc tgttgctgat ctgctcttcc      1200
     tgctgttgtt gctgatatgc tgttgcgatg atcttattca tgattactac ctaattgaac      1260
     tctaaatcaa ctgaactacg aattwttgtt catgaatttt ctagaagcat taaggaaatg      1320
     tattgtaaaa ctttagtctg tagttctaat tccttgttca ttgtgcctgt cgtgatttct      1380
     atgcggttgt tttccactaa tgccggttga atcggtacat ggcaatgctc gtacaaatga      1440
     gggtttctcg catattcctc gtgcggtgat gcactctgct ctctcttcca ataatatcaa      1500
     tatttgtcac gttaacattc aaagcttatg cgctcggcaa atgagcaaat ttgaagaatt      1560
     caaaatgtgt ttcgttaata gtaagattga tttgatgtgc ttgacagaaa cgtggttatc      1620
     tgatgaagtt tcaagtgagt tggttgctgt tgatggctat aagctgtaca gaaatgatcg      1680
     tgggtatagc agaggtggcg gaatcggtat ttattgcaaa aatgatttga ggtgcaatat      1740
     tttatctgct tctgagttgt ttgttggtat gggcgatatt gatagaacag agtatttgtt      1800
     tgcagagata tgctacaatg ctgacaagtt tcttttagga gtaatctaca accctcccag      1860
     aggggattgt gcagaaaaac tggaacaaaa attattcgag ctatctctac aattccaaaa      1920
     catagtgtta attggagatt ttaatactga tttcagcaaa ccaagtacaa aacgttctcg      1980
     aatgcaagcc gtgttcgata attttggatt ccagtgtgtt agtagagaac caactcactt      2040
     ctactcaggc ggttgctccc tgatagattt gttattaacc aataatgatg attttgtatt      2100
     caattttaac caagtgagtg tttcaggttt ctcaaagcac gatatgattt ttgccgcctt      2160
     gaatattgct cgccgtgaaa gcatcgttcc ttcgtttttt agagattata aacgcataga      2220
     caatgtttcg ttgcagaatg ctctgaacaa tataaactgg gatacacttt actcaattga      2280
     tgaccctgat attgcactaa atcttctaaa tgctcactta cttcacttgt ttgattcatt      2340
     tgttccggtt cgtttagtga aaaaatcaaa caacaaaaaa tggtttaata atgacattat      2400
     gcatgccatg attgaaagag atttggctta cagatcgtgg gtagctaata aaaatgaaca      2460
     aaatcattgc caatataagc ggctacggaa ccgtgtaaca catctcataa atgttgctaa      2520
     ggtaaattat gtctcgagta ctttaagtgg gaatagttcc agtaaacagt tatggtccaa      2580
     attaaaaaat ttaaacatta ccaaaccaac tgagtctgat ccgcagtatt caaattctaa      2640
     ggaagagata aataactttt ttgctagcaa tttttcgaat gattcatctc atgtcccatt      2700
     gctttcttcg aactcaaatg gttttagttt ctgcttaaca aacgaacatg aggtaataaa      2760
     tgcgatagga tcgattaaat ccaatgcatt ggggttggat ggaatcccaa tcaaatttgt      2820
     caaatatata ctacctttaa tagttaccca gattacgtat atctttaatc ttataattaa      2880
     aacctctaag tatccacgta cctggaaaat tgttaaaatt attccaatct caaaaaaagc      2940
     aggaaaaaca gatttaaata atttgcggcc cattagcatt ttatgtgcat tgtctaaagc      3000
     attcgagaaa attctaaagt accaaatgag atcatttttg gacaactttc aactattaag      3060
     tccatatcaa tcaggttttc gttcaagtca taatacaact agcgctctat tgaatgtcca      3120
     tgatgatata cactctcata tagacaaaaa gggtgttgca tttctgatgt tgcttgattt      3180
     ttccaaggct tttgatcgag tgtctcatag aaaactattg ttgaaattgt ctagaaagtt      3240
     cttcttttca aatagcgctt taagtttgat taagtcctat ttagttgatc gtcagcaaag      3300
     tgtgtgtatc ggaggacaaa actcaagttt gatcaacatt gtctctggag ttccgcaagg      3360
     ttcggttttg gggccaattc tgtttacgat gtttattaat gatcttccat cagttttgaa      3420
     gcattgcaaa atacatttat ttgcagatga tgttcaggtt tattttttct catccgactt      3480
     atctttgcaa gaaatggcaa gtctaatcaa ttcggattta tctaatattt ttggctggtc      3540
     agaacgcaat ctattgcctc taaatgcctc aaaatcgcgt gctatgttca tttcccgatc      3600
     acgccatcct cctgatttac ctacgattaa acttgggaat gaagaactag aatacgtaaa      3660
     taagttttca aatttaggta taatcctaca gaatgattta gaatgggaag gtcatgtcaa      3720
     ttcgcaatgc agtaagattt ataacggact tcgcactctt agaatcactg ctaatatgtt      3780
     accctgtgat gtcaaactta agctattcaa atctctacta ctgccacatt tttcttatgg      3840
     atgtgaactt cttttaaatg cttcagctag ggcaattgac agattgcgag tagctttaaa      3900
     ttgttgcata cgatggattt ttaacctttc aagatactcc agggtaacac agtaccacaa      3960
     ccaacttctt ggatgctcat tttataactt ttttaaatta cgctcctgtc ttgtgctgta      4020
     caaaataata aatgatgaaa aaccacccta tttgtttcaa aaactacaac cttttcatgg      4080
     tacgcgtcat agaaatttca gattaattca ctacaacact tcgcactatg gtggaacttt      4140
     ctttgtacgt ggcattgtcc attggaacca acttccaccc gcaattaaat ctctaagaaa      4200
     tttacaatct ttccgtagag aggttacggc atggtttgca acaaggaatt agaaattaaa      4260
     cgagtaaaga ttagttaagt aagaattacc aaaatatcat gaacttgatt atcaatctaa      4320
     ttgtagaatt aaaaaaggag aattccttac tctacatgta taacagcata aataaataaa      4380
     taaataaata aataaataaa taaa                                             4404
//
ID   Kiri-13_DTa repbase;    DNA;    INV; 3179 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   02-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3179
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5912-5912 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 3179 BP; 1066 A; 574 C; 528 G; 984 T; 27 other;
     tacttaaatg aacagctgac aaaaccaaaa watgagttgt ttaaagttgc aatgcgtctc        60
     aagaagcawa ggcgcctaac agctgttttc wctcggcgcg gagaagtatt tgtaaagctg       120
     agtgsgggag agaatgctct gtgcgtgcag accgagaggg agctttcaga gatgacagct       180
     tctacmaatc tggcggataa tatcgctagt aattcatttc gcgagtaaat acttttaatt       240
     ttcaaatttt ctccgctmca tgggtttaat aawtaattaw ttcctatttw ttctcacatt       300
     tatacaaaat gggtgatcat ttgggcacac atcaatcgaa tacgtttkcc ttattaaggg       360
     ttcttacgaa gcagakatcc ggccttaaaa tctgtcacat taatgcgcaa ggtctgacta       420
     agaaaattka agaatttaga tatttgtttg ttcccgaatt tatgtgatat gttaktgtcg       480
     tgtgatcttt ttcgwgcaga tmgtgacagt cgcaatttat gtcagcaata aattagctac       540
     caagtccata tgtaaacatc scgagaacag tgsaatagaa tatktatwts tatgwatccg       600
     aaaaaatatt aattgggtgt acatatcgcc ctcattttaa tgtcaactac gatgatctca       660
     tcaatttgct gtcaaatatc tcggttaatt actgtaatat catcttagca ggtgatttta       720
     atagtgatgt cctaagagaa acccatctga aaaatagcat tgaatcacta ggaatgaacc       780
     tggtgaactc atcctttcca acacatttta ccaaatcgcg caacacactg ttagatttat       840
     tttttgtgac caacattgga aaagtagtta tttatgacca attgattgtg ccgtccttct       900
     ctaaacatga cctaatcttc ttgacgtata actttgactt gccagttctt gacaaaacaa       960
     taatttttag ggactttaaa atawagacta tgaccatcta ggcgcggaat ttgacttgtg      1020
     caattggatc gatatttata gtttaccatc agtagaccaa caagtgacct tttttcaaaa      1080
     taatatcagc tacctttata ataaatttgt gccggtacga agtaaaatcc tccgggcatc      1140
     cgaaaaacca tggtttaact ctgaaatcaa gacagccatt aaaaagcgca acgaggcata      1200
     taacaagtgg aaacgataca agacttcagc gctgtgtacc acttttaaaa tgctacgaaa      1260
     gaatgtgaca aacctaatcg attcggccaa atctaacttt tacagtcgca agttttataa      1320
     tacaaattca tcgaccgaaa catggaaggt aataaaaagt ttaggaatat cgagagcaaa      1380
     aactagcctt ttagaagata tagatgtaga tgccttgaat cggcagttca cggaatgcaa      1440
     tgtcctgaag tcactgatag tatatacctg aaccaacaac aagtacctga aaatatatgt      1500
     gataatagat ttaggtttgt gtgtgtcagt caatgtgatg tccttgaatg tattcttaaa      1560
     attaaatcga gtgctaccgg attggacgat gttaacccaa aatttataaa gattttactc      1620
     ccacgaatac ttgtattttt cacccacatt tttaatactg cgattttgac atccgtgttt      1680
     ccagacagct ggaaagttgc caagattcac ccaattccaa agaaaaataa agaatatagg      1740
     cccatatcaa ttctcccata cctgtccaaa atkttcgaaa acctaatggc ggcacaaata      1800
     aataactttg taatagacaa taaagtgctc aatgataaac aatctggcat tagaagacac      1860
     agaagctgca cttccgccat ttaaaaaata gcagaggata tacgagaaca aatagattct      1920
     tacaatgtga cattcttagt tttacttgat tatagtaagg cattcgacac agtaaatcac      1980
     aatattttat gtgcgaaatt aaaaaatgta tataattttt caatcactgc aattaagcta      2040
     atgacttcgt acctgagcaa tcgtcgccaa tcagttgtat tgtctaacat tttatcctcg      2100
     tttgtgtttc ttaaccgtgg tgttccgcaa ggttctgttc ttggtcctct gttatttacg      2160
     ttatatatca atgaccttcc taatttcata tctaactgtg atattcatat gtacgctgat      2220
     gacgtccaga tgtatgttac tcgtcctctt aatagaattc atgagtgtgt aactgtctgt      2280
     aatagtgcaa aaggmaatgg cctaggtctg aacgstgcaa aatccatgtg tctggtcacc      2340
     acaaaaggca aattaaaatt gaaatacgtg gacaatgcac ccaamctagg atttattttt      2400
     aacagaacac tgtcctggaa tgaccatatt tcaagggcag tkggtaagac ctatggcaca      2460
     ctaagatctc tgtcattatc aaaacgtttt ctgcccaaca aacatccgtc tactaattgc      2520
     aaaaacctgt ataattccac aacttttcta tggattagaa gtctttgcaa actgtgactc      2580
     atgcagcctg aataaactta gagtagctgt gaacaatgtc gctcgttttg tctttgattt      2640
     acggagggcg gaccatgttt ctaactttac atataaaatc tttgacctaa gcttaatgga      2700
     ttggataaaa cttagagtac tacttctcct acacaaatta attattattc ataaagaacc      2760
     atcctactta tacgaaaaat tacaatttac aacatcacga agggtaaaca atatcacttc      2820
     agtcaggcac aggtctctgc tatcagaaag acaatttttc gtatactctg ttcgactatg      2880
     gaatcagcta cctaatagca tcaaaaatat aagcagcgca acgcatttta aattaaaatt      2940
     gatctcacac cttaaaagtt aaaattcttt aaacccttaa aaatgttgtt ttttataatt      3000
     atttcataat aaccaaaact aataaattta aagcgaccta aatattaaat ataagtgctg      3060
     tattagataa taagtttaaa tatgtttacc ttaattgata cgtttttgtg actagcgcat      3120
     taataataag ctcgaagctt gtagcgttgg gatgacttat aaaataaata aataaataa       3179
//
ID   Kiri-13_HMM repbase;    DNA;    INV; 2081 BP.
XX
AC   .
XX
DT   27-FEB-2013 (Rel. 19.10, Created)
DT   27-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-13_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2081
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2812-2812 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1778
FT                 /product="Kiri-13_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="SPAKTWKFLNAMGIGGRRTRHTPILSNCMDLDSLNNF
FT                 FTNVNKMDDITKLNTLQSLSLLPNPSPPFLFKPISTAQIRKHVIAIKSDAT
FT                 GYDNISRRMIILSLNYVLPVLSHIFNFSLSSSEFPDAWRHALVIPIPKTSK
FT                 TSNPTSFSNHRPISILPFLSKVLERIVHEQLYLFLHNNNILSPFQSGFRPG
FT                 HSTVTALNKVCDDIRFGIDNQQVTLLVLLDFSNAFNSVDFDILLAILKSIN
FT                 FSSTATEWFSSYLRGRRQSVILDGRQSSLSHISAGVPQGGVLSPLLFSIFI
FT                 NTLTLHISSSYHLYADDLQIYTTVATSEISSAVAKINSDLQLISIWCKSFG
FT                 LSLNPNKSQLCIFGNAKQLFKLHVPLPSVSLDDICLEPSESVVNLGMRMDS
FT                 TFSWSPRVSELSRRVFSALGGLRRWKNLLPLKTKISLAHTLLLPILDYADS
FT                 CYLDLSQQLLNKLERLQNTIIRFIFGIRKYDHVSQFRAQLKWLSIKHRRNL
FT                 HSLTLLYTILYHPITPSYLKERFKFLGSNSLHVQCLRSRTDNLLEVPLSRS
FT                 KCYGDSFTVKTVKLWNELPVNIRKSQTVSIFKRRLKQYYLEQSIN"
XX
SQ   Sequence 2081 BP; 566 A; 455 C; 345 G; 714 T; 1 other;
     ggagtcctgc aaaaacttgg aaatttctga atgcgatggg aataggaggt agacgcactc        60
     ggcatacacc aatcttaagc aactgcatgg atttagattc actgaataat ttctttacga       120
     atgtcaataa gatggacgac atcactaaat taaacaccct tcaatcactg tcattacttc       180
     cgaatccttc acctcctttc cttttcaaac ccatctctac ggcacaaatc cgtaagcacg       240
     tgatagccat taaatcggat gctactggct atgataatat tagtcgtcgt atgattatat       300
     tatcgcttaa ttatgttctt cctgtcttat cccatatctt taacttctcc ctttcgtcca       360
     gtgaatttcc tgatgcttgg cgccatgcac tagtgatccc tatcccaaaa acatccaaaa       420
     cgtccaatcc aacatccttc tctaaccata ggccgatttc cattcttccc ttcctgtcca       480
     aagtcctcga acgtattgtt catgaacaac tatacctatt tttacataat aataatatcc       540
     tktccccttt ccaatcaggt ttccgccctg gacatagcac agtaactgca cttaataaag       600
     tctgtgatga tattcgattc ggtattgaca accagcaagt tactctactt gttctgctag       660
     acttttcaaa tgccttcaat tctgttgact ttgatatatt gctagccata ttaaagtcca       720
     taaatttttc ctcaacagct actgaatggt tttcttcata ccttcgcggc cgcagacaga       780
     gtgtcatact ggatggtaga caatcctcac taagccatat tagcgctggc gtgcctcagg       840
     gtggtgtgct gtctcccctc cttttttcca ttttcattaa cactctcact ctacatatat       900
     cgtcttctta tcatctttac gctgatgact tacaaattta tacaaccgta gccacgagtg       960
     aaatttctag tgcggttgct aaaattaact ccgaccttca gttaataagt atctggtgta      1020
     aatcatttgg gctttcttta aacccaaata aatcccagtt atgtattttt ggaaacgcta      1080
     agcaactgtt taaattacat gtacctttac catcggtttc gcttgatgat atatgtttag      1140
     agcctagtga gagtgttgtg aacttgggga tgagaatgga tagcactttt tcctggtcac      1200
     cccgcgtttc tgagcttagt cgtagggttt tctccgcctt agggggacta agaagatgga      1260
     agaacctctt accattgaaa accaaaatat ccttagccca cactcttctc cttcccattc      1320
     tagattacgc cgattcttgc tatctggatt tgtctcagca actgcttaat aagctcgagc      1380
     gtttgcaaaa tactattata agatttatat ttggaattag aaagtacgac catgtgtcac      1440
     agtttcgtgc tcaactgaaa tggctctcaa taaaacacag gcgtaatcta cattccctca      1500
     ctctccttta taccatcctt tatcatccta ttactccttc gtaccttaaa gaacggttta      1560
     agttcttggg gtcgaattcc cttcatgtcc aatgtctccg ttcccgcact gacaatctcc      1620
     ttgaagtacc tttgtcccga tcaaaatgct atggcgactc ctttactgtc aagacagtaa      1680
     agctctggaa tgagctgccg gtgaatatta gaaaatctca gacggtttca atatttaaac      1740
     gtcgtcttaa acaatactac ctggaacagt ctataaactg attttataac acttagttta      1800
     tgtatgaata tttgtgtatg tatgtatatg tgtattgtgt atatatgtat ctatgtatgt      1860
     atatatatat atgtatatat atatatatat gtgtatgtat gtatgtaatt tatttatgta      1920
     agtttatgcg ggttaggtat atgtttgtaa aagatatttt aagtaatact gtactttttg      1980
     caccgttctg catttgtgtt ttatatatcc tgtattgtcg gttgcctgta agagatcgct      2040
     cttagcgata aggccgccat tgcacattga tcttatatgt a                          2081
//
ID   Kiri-14_AAe repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiritsubo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-14_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4284
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 709-709 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1062
FT                 /product="Kiri-14_AAe_1p"
FT                 /translation="MSVNLNKPLTRASSTSTVNTHTTPGRKDDSNAVMTVN
FT                 DLWIKMQTMFTQSNERLEAKIDSCMDRLNNRMDVLEVNLSASKQECGDNIA
FT                 AISEQVDHIRSDIFQTNRRMDVFGTSSELVISGIPYLQTEDLRQAFRNIAI
FT                 AIGYLEDSVPTTALKRLSRHPIVPGTAPPILCEFALRTARDDFYRSYLQRR
FT                 SLSLRQIGFDNNNRVYINENLPPSVRRIRSEAIKLKKQGQILRVFTKEGTV
FT                 YVKRDEASDAVAVNSIAELN"
FT   CDS           1290..4121
FT                 /product="Kiri-14_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGSRFGNNSSASLLIPKAVFTSVLESDHLCICHLNVQ
FT                 SLTARNFTKFNELSMIFRDSLMDVICMSETWLDDSINDSMINIRGYKLIRN
FT                 DRDRRGGGVCVYVRNNLVARILKTSNNNNSSPHSKTEYLCLEIECQGERFF
FT                 LGVYYNPPEVDCSMLLFEHFEDYTVRYDSTFFVGDFNTDLRKTNNRQRRFS
FT                 DLLSSLSLQCINIEPTFYHHFGCSLLDLVITDSPDLVVKQDQVSMPGVSNH
FT                 DMLFFSLKIGCPQSDHGILYRDYKNFDSTALQNAFESIDWHTFLRCEDPNW
FT                 LVEYFNNCAKYLHDTFIPLRTRTFKPNVWFTGEIELAIVNRNLAYRNWKHN
FT                 KTIELRIVYNRLRNRVTQLIRSAKENFEKRNINTNLPSKVLWNRVKQLGLS
FT                 KSKSTTGIDNFSSDDINDYFSSNFSTDSSDYSSFYDVSNGFMFNTVEDYEV
FT                 INAIFSVKSNAVGFDEVPLSFIKILLPLALPLIVHIFNSIIKTSTYPLAWK
FT                 YVKVIPIKKKGNSSTLSNLRPISLLSSLSKAFEKILKIQMSDYLTGANLLT
FT                 PHQSGFRKDHSTTTALLKVHDDISQKIDKKGIALLLLIDFSKAFDRVSHSR
FT                 LLKKLNCRFNFSLSSISLIKSYLTDRFQAVVNSGSTSSAHMIKSGVPQGSI
FT                 LGPLLFSMFIDDLPSVLDFCSIHIFADDVQVYLCSGNTIDIEQMSVNINHD
FT                 LRKIFSWSCINLLPINSSKTKALLISRKRNPPNPPDIFINNEKIEFVEHAS
FT                 NLGVIFCKDLNWDAQINSQCGKVYGSLKRLHLSTRHLDIETKIRLFKTLLL
FT                 PFFTYGDFLYSNANAYALNKLRLCFNACVRYVYNLPRFSRISHLHTSLIGC
FT                 SFSQFYKYRTCLMFFKIINTMKPDYLYSKLVPLRQSRARNYSIPNHVSTYY
FT                 GQSFFVRSIANWNQLPSSLKSSSSVTIFKRNLLVWLSSTE"
XX
SQ   Sequence 4284 BP; 1261 A; 812 C; 770 G; 1431 T; 10 other;
     caaawaasgg ctwtakcaca ckcaamctcg aatttcctga agggatgtgt gtaaccgagt        60
     agagtgtttt tgtcgacgca ktttcaaacg actttttcgg ctgktaaawc tkaagtttaa       120
     atcgagtttt tgcgcgatct gggactaaag ttgtggtgta gtgattgcag ttgtgttctg       180
     agctgttgta attaactgta aatccagtgc gaacttagtg tttggatcaa cttgtcaatc       240
     gccattctat ataaagccct tcagcagtgt atcgcaacaa tgagtgtgaa ccttaacaaa       300
     ccactcactc gtgcatcttc tacatccact gtcaacactc atactacccc aggtcgtaaa       360
     gatgactcca acgctgttat gacggtcaac gatttatgga tcaaaatgca gacaatgttt       420
     acacagtcta atgaacgttt ggaagccaaa atcgattcgt gtatggacag actgaacaat       480
     cgaatggacg tgctggaggt taatctgtcc gccagtaaac aggagtgtgg cgacaacatt       540
     gctgcgatct cagaacaagt cgatcacatt cgttcggaca tctttcagac taatcgcaga       600
     atggacgttt ttgggacgag ctctgaacta gtaatctccg gcattccgta tcttcaaacc       660
     gaagatttga ggcaggcttt tcgtaatatt gctattgcta ttggttatct tgaggatagc       720
     gttccgacaa ctgcacttaa acggctttct agacatccaa tagtaccagg aaccgcacct       780
     ccaatcctct gtgagtttgc cctacgtact gcaagagatg atttttatag atcttatctt       840
     cagcgaagat cattgtcgct ccgtcaaatt ggtttcgata acaataatcg cgtctacatc       900
     aatgagaatc tgcctccttc agtgagacga attcgttcag aagccatcaa actaaagaaa       960
     cagggccaaa ttttaagagt cttcacaaag gaaggaactg tatacgtgaa gcgtgacgag      1020
     gcaagtgatg ctgttgctgt taactctatc gccgagttga attagcccaa gaacatcata      1080
     tgatcgtgcc ctgcgaaaat gttgctgctg ttgctgttgt actgctgtcg ttgctatttt      1140
     tatcagagtt tggaaatgcg tcgatgatta taatgttata acaagttttt tttttttgtc      1200
     aatgaactcg aatttgattt gctcattcaa cactattact ctgtactgga ttgaggttac      1260
     tgaaaggtgt ttgctgctac cttacaacaa tgggtagtcg tttcggaaat aatagttctg      1320
     cgagcttgct gattcccaag gctgttttca cctcagtctt ggaaagtgat catctttgta      1380
     tttgccatct gaatgtacaa agtctcacag cacgaaattt caccaaattc aatgaactgt      1440
     caatgatatt tcgtgatagc ttaatggatg taatttgcat gtctgaaaca tggttagacg      1500
     attcaattaa cgatagtatg attaacattc gcggttataa actgattaga aatgatcgtg      1560
     accgacgtgg tggaggcgtc tgtgtctatg ttcgaaataa tttagtagcg cgtattttaa      1620
     aaacatcaaa caacaacaat tcatctcccc atagtaaaac tgagtatttg tgtctggaaa      1680
     tcgaatgtca aggtgagcgt ttcttcttag gcgtgtacta caatcctccg gaggtagact      1740
     gttcgatgtt gctttttgag cattttgagg attacactgt tcggtatgat tctacttttt      1800
     ttgtgggtga ctttaacaca gatctgcgga aaaccaataa cagacaaaga agattttcgg      1860
     atttattatc tagtttatct cttcaatgta tcaatatcga accgactttc tatcatcatt      1920
     ttggatgctc gttgctagac cttgttataa ctgatagtcc tgatctagtg gtcaagcaag      1980
     atcaagtttc aatgccgggc gtctctaacc atgatatgct ctttttttct ttaaaaatag      2040
     ggtgcccgca atctgatcat ggcattctct atagggatta caagaatttc gacagtactg      2100
     cattacaaaa tgcatttgaa agcatagact ggcacacctt tttgcgttgt gaggacccta      2160
     attggcttgt cgagtatttt aacaactgtg ccaaatacct tcatgatact tttataccct      2220
     taagaactcg tacttttaaa ccaaatgtgt ggttcactgg ggaaattgaa cttgctattg      2280
     ttaacagaaa cttggcatat aggaattgga aacataacaa aactatcgaa ctaaggattg      2340
     tatacaatcg tttgcgtaac cgtgttactc aattgattag aagtgctaaa gaaaatttcg      2400
     aaaaacgtaa catcaatact aatctgccaa gcaaagtgct ctggaataga gtcaaacaac      2460
     taggtctttc taaatccaaa tcaactaccg gtattgataa tttttcttct gatgatatca      2520
     atgactattt ttcctctaat ttctcgacag attctagtga ttattcttcc ttctatgatg      2580
     tatccaacgg atttatgttt aacacagttg aggattatga agttattaac gcaattttct      2640
     cggttaaatc gaatgctgtt ggcttcgatg aagttccttt aagttttatc aaaatattat      2700
     tgcctttagc tcttcctctt attgtacaca tattcaattc tatcatcaaa acttctactt      2760
     accccctagc ttggaagtat gttaaagtaa taccaataaa aaagaagggt aattcttcga      2820
     ctctttctaa tcttcgaccc attagtctgc tgtcctcgct ttcaaaagct tttgaaaaaa      2880
     tactcaaaat tcaaatgtca gactatctta ctggcgctaa tttgttaacc ccgcaccaat      2940
     caggatttcg taaagatcat agcaccacta cagccctttt gaaagtacat gatgatattt      3000
     cacaaaaaat tgataaaaaa ggaatagctc tgttattatt gattgatttc tcgaaggcct      3060
     ttgatcgcgt ttcgcatagt aggttgctca agaaactaaa ctgtcgtttt aatttctctt      3120
     tgtcttccat ttctctaatt aaatcctatt taactgatag gtttcaagct gttgtaaatt      3180
     ccggatcaac atcgtcagcc catatgataa agtccggtgt acctcaggga tctattcttg      3240
     ggccattact tttctctatg tttattgacg atctaccctc cgtactcgat ttttgttcga      3300
     ttcatatctt cgctgatgat gttcaagttt atttatgttc tggaaatact attgatattg      3360
     aacaaatgtc tgtaaacata aatcatgatt tacgaaaaat atttagttgg tcgtgtatca      3420
     accttttacc catcaactcc tcgaaaacaa aggccttgct aatctctaga aaaagaaatc      3480
     cacctaatcc ccctgatatt tttattaata atgaaaaaat tgaatttgtt gaacatgcta      3540
     gtaacttagg agtaattttt tgtaaagatt tgaattggga tgcgcagatc aattcccaat      3600
     gtggtaaagt ttatggcagt ctcaaaaggt tgcatctttc cacaagacat ctggacatcg      3660
     agactaaaat taggcttttt aagactcttt tattgccgtt cttcacatac ggtgattttt      3720
     tatattcaaa tgctaatgct tacgctctta acaaacttcg tttatgtttc aacgcttgcg      3780
     tgcgttatgt ttataatctt cctaggtttt caaggatctc ccacttacat actagcttaa      3840
     taggttgttc cttttctcaa ttttataagt atagaacttg tttgatgttt ttcaagatca      3900
     ttaacacaat gaaacccgat tatctgtata gcaaattagt gcctttaaga caatctcgtg      3960
     caagaaacta ttccatccct aaccacgttt caacttacta tggacaatct tttttcgtta      4020
     gaagcattgc taattggaat cagctaccct cttctttgaa atctagttca tcggttacta      4080
     tttttaaacg gaacctatta gtgtggctct ccagtacaga gtaatatctc aattgataga      4140
     gaacctcagg aattatagtt ttaagttaga ttgtaagaat atgataacat ttgaaatttg      4200
     tattttcttt ttgtggcaat ttaaaaggct ttgccttacg ccacattttc attggaataa      4260
     ataaaataaa taaaataaat aaaa                                             4284
//
ID   Kiri-14_DTa repbase;    DNA;    INV; 1771 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   02-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1771
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5913-5913 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 1771 BP; 607 A; 306 C; 290 G; 561 T; 7 other;
     aacgcagttg gacttgataa catagatccc aaatttatta aaatcatact accaaaaatt        60
     ttgccacatg ttacttttgc cgtaaatagt gtgctaacca cttccacttt ccctaaaata       120
     tgsaaggacg ccaaaatact tcctgttcgt aaggcaaatg gtgactatag gccaatatct       180
     atactaccgt atttgtctaa attaagcgaa aacctaatgg ccaagcaaat caacaaatat       240
     gtagagacaa atggtctgtt aaacaacgcg caatcaggtt ttaggaaaaa tagkagctgt       300
     gtaacagcct tgctgaatat agtggaggaa accagggaaa gcatggagga aggcaaagta       360
     actctactga cccttctaga ctttagcaaa gccttcgaca ccgkgaacta tgatattctg       420
     tgctctaagc taataagaat gtttaacttc tctgtaacag cagagaaatt aatacgctct       480
     tacttaaatt gcagacgtca agccatagtt acgtccactc aaacttccaa ctatgaacag       540
     ctttctagag gagttccgca gggatctgtt ctaggacctc ttcttttctc tatgtatgtt       600
     aatgagcttc caaatgttgt gtcctcgtgc aaagtccata tgtatgccga tgacgttcaa       660
     atgtgtgtat cgcgtccttt gtccagaata aatgaatgtg tagtgatgtc aaatactgaa       720
     ttgtcggtag taaacaaatg gtcgaagcta aatggtctac aaataaaccc aaaaaagtct       780
     aaatgtttgg ttatctawaa taaattagtc gataccactg ccctgacacc attagtaata       840
     gatggtgmag ttattgagta tgttgaaaaa gcaaataatc tgggtatcat attcaacaaa       900
     acactcactt ggagcgacca tattaaccaa gctattggaa aaacatatgg ttctttaagg       960
     tcactgttcc atactcaama attcttacca gaagggacaa gacttctaat ggcwaaaacc      1020
     tatttaatac cggcattatt ctacggcgtc gagatattcg gaaacagtga tgcaacaagt      1080
     aaacaaaaac ttaatgtagc gtttaatagt gttgcgagat atgtgtttaa tgtaaggcgt      1140
     gggcatccga tttcaagttt agcgttcaag atatttgaag ttgatcttca atcatggatc      1200
     caattcaggg cattagtggc attgcacaaa ataattaaca ccaaagaacc cgactatctc      1260
     tacaaaaaac taacacatac cagttcgaga cgaacgaata acattgcatg cataagacac      1320
     aaaagaactt tttctgaaaa acaattcttt attttttctg ttcggtattg gaacgaactt      1380
     cccaatggat taaaaataat taagagcgta ccgaatttta aatcaacatt aattatacac      1440
     cttcaaaacc gttaatataa tgagagaaat tagtttaaat tagtttaagt acccccaaca      1500
     tcagtttaaa tttgtaaaaa aaactatatg tttcaatgaa aatttgtatc ccattttgtt      1560
     cattttcttt tttttttttt ttgtatgtta tatatagtct ttttatttat tatgtgtctt      1620
     ttctttgtaa ctgtctttaa aataactgtt tttttcttaa gattattttc taaattattc      1680
     tgatcaaaaa gtattgtaat tcacgtgact agcacattaa tatataagtt taacttgtag      1740
     tgctaggaat tttaaataaa taaatattaa t                                     1771
//
ID   Kiri-15_AAe repbase;    DNA;    INV; 4539 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-15_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4539
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 710-710 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           380..1039
FT                 /product="Kiri-15_AAe_1p"
FT                 /translation="MQFMFQDMVNKTIGIIESCNRSLQDEITALRRNIQQL
FT                 QEECRAEIVTLSNDMKKIENEMCSIAERTAAMERNNDLLLFGIPFHPSECL
FT                 XGFLQSVCSXLGYGSEDTPLVFTKRLARAPVKTGTTPPILLQFAFKHDRCD
FT                 FFRRYLSSRRLSLHHLGFSSQSRIYLSENLTRQXRVIKGAALKLKRDGKLH
FT                 SVFTKGGIVFTKITADAAAVPILSLEQLPS"
FT   CDS           1542..4379
FT                 /product="Kiri-15_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPDSQTNALSNSCIPRAVMNSVLSSNFLNICHINMQS
FT                 MCARQMSKFNEFTQYFVHSKIDIICVTESWLTSDINDDLIAVEGYNLLRLD
FT                 RGYCRGGGICIYFKNDLRFKVLCRSELLPGVQYSNLTEYVFIDTQCEEGNF
FT                 LLGVFYNPPNSDCSDLLFDKLSDLSVRYSNTVIIGDFNTDLNKNSRKTFKF
FT                 KNTVESLGFTCANTFPTHFHPGGCSLIDLILSSNEDFVQTVQQVSAPAFSN
FT                 HDIIFSSLNITRDATVSKFMYRDYKNVDMAGLTRAIDSIDWSMLESITDSD
FT                 IAVDLFNRILCNLQDTFIPLRCSKPKRNPWFNSDIQKAMIERDVAYRLWVS
FT                 DRSSHNHSQYKRLRNKVTQLIACAKSNLVSRRIDSSNSSKDLWKKLKQIGA
FT                 TCTSSSKSNFENTGTEINDYFASNFTVDSSSISIPPQNIQGFQFTQIRDHD
FT                 VILAIKSIKSNAIGVDNIPIQFIRLILPYVVRQISYIFNLIISTSKYPRAW
FT                 KTSKVLPIRKKPSSDSLENLRPISILSSLSKAFEKILKLQIQEHLIYFDLL
FT                 SEFQSGFRAGHSTTTALLKLHDDILSTVDKKGIAFLLMIDFSKAFDRVSHS
FT                 KLLAKLSSKFMFSRAAVRLLQSYLSNRSQFVCVDGCYSDTVNILSGVPQGS
FT                 ILGPLLFTMFINDLPSVLKYCHIHLFADDVQIYITSTALSSDELAAMLNED
FT                 LSRVLEWSTSNLLPVNPAKTKAMLMSRNREVNQRPIILFGNSIIEYVDNVT
FT                 TLGFVLQSNLEWEGHINAQCSKIYRGLRVLRITSSTLPISVKLKLFKSLLL
FT                 PHFVYGDVLLLNASAIAMDRLRKALNSCVRYVFNLSRFSRVSHLQSHLLGC
FT                 RFQDFHKIRSCNMLFKLLTKRSPKYLYTKLHSFQNSRNRNFLLPRFCTSHY
FT                 RNTLFVQGIVFWNHLPSVLKNMTSVSGFRQECAALFNSQYQQ"
XX
SQ   Sequence 4539 BP; 1277 A; 904 C; 827 G; 1517 T; 14 other;
     agtccggctc tggcaatgat cggatgtagt gagtgatcgc attktcgcgc agttttgtga        60
     aatttactac gttttttgct gctgaaacaa ttggaatggc tggccaacct wactttcgat       120
     gctgagtttt gctgccccga tggagttktg tcccgcwkat gctgattatc cgtatattgg       180
     ctgtattttg ttgatgggca tctgaagcac cagctgcgat cttagagctt caaccgttag       240
     cccakkttct catctgtcaa mctcaggctc tcaccgttag cccatccgtc tacctgcact       300
     cactgtttac cagccatggg tggtagtggt actttggtat tagaacgaca tcaggatttc       360
     gtcacaacat tcgactagaa tgcagttcat gttccaggat atggtcaata aaactattgg       420
     cataattgag tcctgcaacc gatcgttgca agatgaaata accgcacttc gccgmaatat       480
     tcaacaactt caggaggaat gcagagctga gattgttacg ctgtcgaatg acatgaagaa       540
     aattgaaaac gagatgtgct ctatcgccga acgcactgct gccatggaac ggaacaatga       600
     tttgttgctg tttggaattc cgttccatcc aagtgaatgt cttwctggat ttctacaaag       660
     cgtttgttca gwgctgggtt acggcagtga agatactcca ctggtattca ccaagcgcct       720
     cgctcgagct ccggttaaaa ccggtacmac tccccccatc ctgctccagt ttgctttcaa       780
     acatgatcgc tgtgatttct ttcgacgata cctttcatct cgacgtcttt cactccatca       840
     tctcggattt tcctcacaat ccaggatata tctgagtgaa aacctcacta ggcaagsccg       900
     agttatcaag ggagctgccc tgaagctgaa gcgtgatggc aaactacact ccgtattcac       960
     caaaggtgga atcgtcttca caaaaattac tgctgatgct gccgccgttc caatcttatc      1020
     tttggaacag ttaccatcgt gaaccttgtc mtattaaaat aatctttcct tccgatcaaa      1080
     cattccatgg ctccagtcct tatcattcct ttgaatattc cgctcctgaa agtaagcatt      1140
     aattcaacct ttccaacaag cttctgcata ttcctcccta tgatttcctt gactccgttc      1200
     cttcagtctt cctgtgtttt catccttcct aaaagttttt cacctttgga aatgctgcag      1260
     aacccaccgt tactgttacc tgctgttgct gctgacgctg atgctgttgt tgatgctgtt      1320
     attaatgctg ttgttgatgc tgatgttggc cttcctttca attgtttgtc attgataatt      1380
     tttgatgatt tcacgaactg tttaagattg tttaaagatg aaattgttct caatgaattc      1440
     atttgattta gattgtttgt tattcacttc tattgctgat tcgttgctgt tgtatggagt      1500
     ggtatgttct tgttggggtt cgcttacatt gttcagtcta gatgccggat agtcaaacaa      1560
     atgctctttc aaatagttgt attcctcgag ccgtcatgaa cagtgtgctc agttcaaatt      1620
     ttttgaatat ttgtcacatt aatatgcaaa gtatgtgcgc tcgacaaatg tcgaaattca      1680
     atgaattcac gcagtatttc gtccatagta aaattgatat tatctgcgtt acggaaagtt      1740
     ggctcacaag tgatataaac gatgacctaa ttgctgtgga ggggtataat ctcttgagac      1800
     tcgacagagg ctactgtcgt ggtggtggaa tatgtattta ttttaagaat gacttgaggt      1860
     tcaaagttct ttgccgttct gaattattac ctggtgttca atattctaat ctgacagaat      1920
     atgtattcat tgatactcaa tgtgaggaag gaaacttttt attgggtgtc ttctataatc      1980
     cccccaattc agattgttct gaccttctgt tcgataagtt atctgacctt tcagtccgat      2040
     attccaacac ggtaataata ggtgatttca acacggactt gaataagaat agtagaaaaa      2100
     cgtttaaatt taagaacaca gttgaatcac tcggattcac ttgtgctaat acatttccaa      2160
     ctcattttca tcctggaggt tgttccctaa ttgatttgat attatcatct aatgaggatt      2220
     tcgttcaaac agtgcaacaa gtgtcagctc ctgcattttc aaaccatgat atcatttttt      2280
     catcgttaaa tataacacga gatgcgaccg taagcaaatt tatgtatagg gattataaaa      2340
     acgtcgatat ggcaggtttg actcgagcaa ttgattcaat tgattggtct atgttggaaa      2400
     gtattactga ttcggatata gcagttgacc tttttaacag aatattgtgt aatttacaag      2460
     ataccttcat tcctcttcgt tgctccaaac caaaacgtaa tccatggttt aacagtgata      2520
     tccagaaggc gatgatcgaa cgtgacgtag cgtatcgttt gtgggtttcc gaccgatcat      2580
     cgcataacca cagtcaatac aaacgccttc gtaacaaggt tacacagctt attgcttgcg      2640
     ctaaatcaaa tctggtgtcc cgaaggatag attcctctaa ctcttcaaaa gatctatgga      2700
     aaaagctaaa acaaattggc gcaacatgta catcttcaag taaaagtaat ttcgaaaaca      2760
     caggtacaga aatcaacgat tattttgctt ctaactttac tgttgatagc agtagcatct      2820
     ctattcctcc tcaaaatatt caaggatttc agtttacaca gatcagagat catgacgtca      2880
     ttttggccat taaatctata aaatctaatg ctattggagt ggataacatt ccaattcagt      2940
     tcattcgatt gattcttcct tatgtagttc ggcaaataag ttacatcttc aatctgatca      3000
     tttccacatc caaatatcct cgtgcttgga agacttccaa agtcttacca atacgaaaaa      3060
     aaccatcaag cgattctctc gaaaacttaa ggcccataag tattcttagt agtttatcca      3120
     aagctttcga aaaaattcta aaattgcaaa tccaagaaca tttgatctat ttcgatctat      3180
     tgtcagaatt tcaatctggg tttagagcag ggcacagtac aacgacagca ttgcttaaac      3240
     ttcatgacga tattctttct acagtagata agaaaggcat tgcctttctt cttatgatag      3300
     atttttcaaa ggcgtttgac agagtatctc attcgaaatt attagctaaa ttatcatcaa      3360
     aattcatgtt ttctagagca gctgttcgtt tgttgcaatc atacctatcg aataggtcac      3420
     aatttgtttg cgtagatgga tgttactcag atactgttaa tattttatcc ggagtaccac      3480
     agggttcgat tttaggccct cttcttttca ctatgtttat taatgattta ccgagtgtac      3540
     taaaatactg tcatattcat ttgttcgcgg atgacgtcca aatttacatt acatctactg      3600
     ctctatcgtc ggatgaattg gcggctatgt taaatgagga tctctcacga gttttggaat      3660
     ggtctacgag taatctctta cctgttaatc ctgctaaaac caaagccatg ttaatgtcaa      3720
     gaaacagaga agtcaaccaa cgtcctatta tattatttgg aaattccata attgaatatg      3780
     tcgacaatgt taccactctg ggatttgttc ttcaaagcaa tcttgaatgg gaagggcaca      3840
     taaatgctca gtgttcaaaa atatatagag ggcttcgtgt acttagaatc acttctagta      3900
     ccttaccaat ctcggtgaaa ttaaaactct ttaaatcatt gctgttgccg cacttcgttt      3960
     atggagatgt tcttttattg aacgcctctg ccatagctat ggatcgttta cgtaaagctt      4020
     tgaactcatg cgtacgatat gtttttaatc tttccagatt ctctagagtt tcccatttac      4080
     aatcacatct cttgggttgt cgttttcaag actttcataa aattcgtagt tgtaatatgt      4140
     tatttaaact tctaactaaa aggtctccta aatatttgta cactaaactt cactcgtttc      4200
     aaaacagtcg taatcgcaat tttcttcttc cacggttctg cacgtctcat tataggaata      4260
     cactatttgt ccagggtata gtattttgga accatcttcc ttccgttttg aaaaacatga      4320
     ctagtgtaag tggatttcga caggagtgtg ccgcattgtt caacagccaa tatcagcaat      4380
     aggtttagat tattttttta ttgtatatca ttagttcatt gtcagtttcg gatttgttat      4440
     attagattcc atgaattcaa cgtgtgtagt atcaaaaaag gaagttcctt acactacatt      4500
     attatgagaa ataaataaaa ataaaataaa taaaataaa                             4539
//
ID   Kiri-15_DTa repbase;    DNA;    INV; 4195 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   03-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4195
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5926-5926 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           422..1054
FT                 /product="Kiri-15_DTa_1p"
FT                 /translation="MMSGACGSTSAIWRKNLLTSQLQLLRMTSVCMACLLS
FT                 KGNRCDRSSTPSPFQLVLTPAPRLRDIFRVKPANRANTIVDPIIIVKLDNQ
FT                 SEKIRLLHAAATFRREPKQQLTLRLMGFDSDALIYLNEQLTKKNYNIFKEA
FT                 MQMKKHKLLTAVFCRRSLVHVKKNERGRVICVDSMQKLSQLRADPDDPEQS
FT                 LADVSSAAEPDKQPDKTLFRS"
FT   CDS           1217..4012
FT                 /product="Kiri-15_DTa_2p"
FT                 /translation="MQANIDITKPNSYEMVRILTKQKQGLHICHINAQSLV
FT                 NKMDEFRYMFVQSNIDIICVSETWFVPDLNNSLIVCDGFNVYRSDRMSHAG
FT                 GVAIFVSTRLKCKEVLKHPVDSPIEYLFLELTNIRNNNKTLVGCIYRPHKN
FT                 TDYSNMIDMLYNLSSTYMNIIITGDLNSNILVERHLSAEMGSLDLHLVNSS
FT                 IPTHFTTTCNTLLEIFLVNNKNNILLYDQLSVPAFSRHDLIFLTYNLKLDY
FT                 TNHIIQYRNFRDINYDLLSNECCLCNWNVIYTLTSVDEQVNIVQENVKYLY
FT                 DKFVPIKTKIIKPAANSWFNTYIKSAIKRRDYNYDKWKRYRMEHFFRQYKN
FT                 SRKEVNILIKNAKRTFYSSKFESAISSQQTWRVIKSLGIGKAVPEKNDDID
FT                 VTDLIQKFTDLNVPEADSSAYVCPVLSNNCNNMFDFACVSQCDVLEAMLKI
FT                 KSNAVGLDDMSPKFIKILLPHILGHITHIINFAFTTCMYPEQWKIGKIIPI
FT                 PKSNRDFRPISILSFLSKTFEQLITKQINTFFTTNNLLNSKQSGFRQNRSC
FT                 TTTLIKVVEDIRRKLDKNDVTFLTLLDFSKAFDTVNHKILLTKLKVLYNFS
FT                 NTALSLMNSYLSSRKQAVVTNETRSNYMHVKRGVPQGSVLGPLLFTIYIND
FT                 LPNVLSNCEVHMYADDVQMYVSRPLCQISDCVNVCNDELLNVSEWACKNGL
FT                 SLNPSKCKCLVIYKKNLNTEHLNNLTIGSKKIEYVAKAENLGITLNNTLSW
FT                 TDQVNKAVGKTYGVLRNLSLSQHFLPMNIRLMVAKACLTSVLFYGVEIFGR
FT                 CDAASQHKLNVAFNCIARYVFNVKRYDHVTCYSNRIFDISLTNWIKLKALT
FT                 LLHKIVYTKQPDYIYDMINLSTSQRTKNIIPIKTTLASSDKHFYTNTIRLW
FT                 NQLPHEIKSISNAHRFTIKVREHFANTQ"
XX
SQ   Sequence 4195 BP; 1432 A; 797 C; 754 G; 1212 T; 0 other;
     acaactgcag gaggacagca ataatcactc aataatcaaa aactctacat agccaggccg        60
     caagacataa acaacaacac ctgcagcaac aacaacaaca cacttgcaca acatccactt       120
     tcgtacacta accaacaaaa atggcaccag tttccaagcg caccagggaa aactcatctg       180
     gagacatcaa ggtgactgca accagcgaag cagccacttc aatggtcatc aaaatcctca       240
     acaaacgatt tgaggagcag gaggcgatta atgccaggag attcctggag caggcggatt       300
     ttatatctac caaaattggg gagtcggagc agcgtattct tcaaatgctt cacgactgag       360
     ggactgaacc gggacatgca gagtctactc cagcgagttg agcagttgga aaaacaatct       420
     gatgatgtcc ggggcctgcg ggtccacgtc ggcaatctgg agaaaaaact tgctgaccag       480
     tcaacttcaa ctgttgcgca tgacatccgt ctgcatggcg tgccttttgt ccaaggggaa       540
     tcgctgcgat cgctcttcaa caccctctcc ttttcaattg gttttaacac cggcaccgag       600
     gttgcgagac atcttcaggg tcaagccagc gaatagggcg aacacaattg ttgaccctat       660
     tattattgtc aagttggaca atcaatccga aaaaattcga ctactacacg cggctgcgac       720
     gttcagaaga gagcccaaac aacaactaac gctacgtttg atgggcttcg actcggatgc       780
     tctcatttat cttaacgaac agcttacaaa gaagaactac aacattttta aggaagcgat       840
     gcagatgaaa aaacacaagc tattaactgc ggtattttgc cgccgttcgc ttgtgcatgt       900
     taagaagaat gagaggggga gagtaatttg tgttgacagc atgcaaaagc tctctcaact       960
     gcgcgcagat ccagatgatc cggagcaaag cttagcagat gtaagcagcg ccgcggagcc      1020
     agataagcaa ccagataaga ctctttttcg ttcctaataa tgcaactgtt gtaatcattt      1080
     ctcttttaaa ttttactctt aagaattatc tcataaattg ttttgtctct ctttctgtgt      1140
     gtttctataa agccctctct tcaaaaatcc ttgtgcatct gcaaactcaa cattatattt      1200
     taaaatcaat attaatatgc aagccaatat agatattaca aagccgaata gttatgaaat      1260
     ggtcagaata ttaacaaaac aaaaacaagg tctacatata tgtcatataa atgctcagag      1320
     tctcgttaac aaaatggatg aatttagata tatgtttgtc cagtccaata tagatataat      1380
     ttgtgtgtca gaaacatggt ttgtcccaga cttaaataat tcgttaattg tttgtgatgg      1440
     ttttaatgtt taccgttctg accgtatgag tcatgcagga ggtgttgcta tatttgtcag      1500
     cacgcggtta aaatgtaaag aagttcttaa acatccagtg gacagtccga ttgaatatct      1560
     tttccttgaa cttactaata tacgaaacaa taataaaact cttgtcggct gcatctatag      1620
     accacacaaa aatactgact actcgaacat gattgacatg ctatataatc tttcttcgac      1680
     gtatatgaac attataataa ctggggactt aaacagcaat attttggtgg aacgacatct      1740
     ctcggccgaa atgggatcgc tagatttaca tcttgtaaac tcgagcatac ccacacactt      1800
     tacaacaacc tgcaatactc ttctggagat attcttagtt aataataaaa ataacatttt      1860
     gttatatgat caactatcag tacctgcgtt ctcaagacat gaccttattt ttttgacata      1920
     caatttaaaa cttgactata caaaccatat aattcaatat agaaatttta gggacattaa      1980
     ttatgactta ctatcgaatg aatgttgtct gtgcaattgg aatgttatct atacgttgac      2040
     ttcggttgat gaacaggtta atatagtcca agaaaatgta aaatatttat atgacaagtt      2100
     cgttccgatt aagactaaaa ttataaagcc ggctgccaac tcatggttta atacctacat      2160
     aaaaagtgca ataaaaaggc gagactataa ttatgacaag tggaaacgat atagaatgga      2220
     gcattttttc aggcagtaca agaatagcag aaaagaagta aatattctaa ttaagaatgc      2280
     taaacgaacg ttctattcgt ctaaatttga aagtgcaata tcctctcaac aaacatggag      2340
     agtcattaag agtctcggaa taggcaaagc agtacctgaa aaaaatgacg atattgacgt      2400
     aactgaccta attcaaaaat ttactgacct taacgtacct gaagctgact ctagtgccta      2460
     tgtttgtcca gttttgtcta ataattgtaa taatatgttt gattttgcat gtgttagtca      2520
     gtgtgatgtc ttagaggcta tgttaaaaat taaatcaaat gctgttggct tggacgatat      2580
     gagccctaaa tttataaaaa tacttctgcc ccacatcttg gggcatatta cacatataat      2640
     taattttgca tttactactt gtatgtaccc tgagcagtgg aaaataggaa agattattcc      2700
     aatacccaaa tcaaaccgtg attttaggcc gatatctatt ctttcgtttt tgtcaaagac      2760
     gtttgagcaa ctgattacaa aacaaataaa cacctttttt accactaata atctactaaa      2820
     tagcaagcaa tctggttttc gacaaaatag aagctgcaca accactttaa ttaaagttgt      2880
     agaagacatc agacgaaaat tagataaaaa cgacgtaaca ttcctgacac ttcttgactt      2940
     tagcaaagca tttgacaccg tgaatcacaa aatccttttg acgaagttaa aagttcttta      3000
     caatttttct aacactgcac taagccttat gaactcttat ttgagtagcc gtaagcaagc      3060
     agtcgttaca aacgaaacta ggtcgaacta catgcacgtt aaacggggtg tccctcaggg      3120
     ctctgtccta gggcccctgt tgttcacgat ctacataaat gatctgccga atgtactgtc      3180
     caactgtgaa gtccatatgt atgcagatga tgttcaaatg tatgttagtc gtcctttgtg      3240
     tcaaattagt gattgtgtta atgtctgtaa tgatgagtta ttaaatgtta gtgagtgggc      3300
     atgtaaaaat ggtctcagtt taaatccgtc taaatgtaaa tgtcttgtta tttataaaaa      3360
     aaaccttaat actgagcatc taaacaacct taccataggg agcaaaaaga ttgagtatgt      3420
     tgctaaggcg gagaacctgg gcatcacatt aaacaatacc ctatcatgga ctgaccaagt      3480
     taataaagca gtaggtaaaa cttacggtgt gcttaggaat ctatccttat cgcagcactt      3540
     cctcccaatg aatatacggc ttatggtcgc caaggcgtgc ttaacatccg tactatttta      3600
     tggggttgag attttcggaa gatgtgatgc agccagccaa cacaaattaa atgtagcgtt      3660
     taattgtatt gcccgttatg tattcaatgt taagagatat gaccatgtta cgtgttattc      3720
     aaataggatt tttgatataa gtttgacgaa ttggataaaa cttaaagctt tgacactcct      3780
     ccacaaaata gtttatacga aacaacctga ttatatatat gacatgataa atctatctac      3840
     ttcccaacgc accaaaaata taattcctat taaaactact ctggctagct ctgacaagca      3900
     cttctacact aacactattc ggctttggaa tcaacttccg catgaaatca aatcaataag      3960
     caatgcacat agatttacca taaaagttag ggaacacttt gcaaacacac agtaggaaca      4020
     atagtataat tgtaatatta catataatta aataatgtta ataataagaa atgacataaa      4080
     ttttagtaaa taagtaaatc aaactgtttg aaacccattg tgactagcgc gctaagataa      4140
     aagtagaaat actgtagcgt taggaatcga tcaaaaataa atataaatat aaata           4195
//
ID   Kiri-16_AAe repbase;    DNA;    INV; 4205 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-16_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4205
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 711-711 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1073
FT                 /product="Kiri-16_AAe_1p"
FT                 /translation="MTTKRTPPSNINNVVKRPRTGEDGETDGNSLTLDSAV
FT                 RMLMKQFNETKLLIDEMRTEINSKIDAVKNELEGKLTVVSNDINSLKAECA
FT                 SKFQTSNAMINGLTVRVDEISSAMDNLGNRNELILSGIPYLRGEDLMKHFS
FT                 AICMQLGIDERSTPSVDIRRLKSGAMNDGDISLVLVQFALRNLRDDFYSAY
FT                 LRKRDLQLNHLGINSTRRVYVNENLAAVPRKIKVAAVRLKKAGKLASVYTK
FT                 NGTVIVKSTTAAQPIVINSEEQLNQFSN"
FT   CDS           1209..4064
FT                 /product="Kiri-16_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPSLNNHTLTNIPGAVMNAVLLPGKLNVCHGNAQSIC
FT                 ARRSTKMEEVSNMLLNSVVSIACFTESWLSPKIADRSIAIPGFKIARNDRL
FT                 YMRGGGIVIYYKEHLRCHKVFETVLQRDSEDKTECLALVFHFGTETLLLMA
FT                 VYNPPDNDCSRFLADKLSDLSAHYDTVLLIGDFNTDLSSRSNKRACFEAVL
FT                 QSFAMTSIGEEPTFFHNNGCSQLDLFITSCNQKVLRFNQVSFPALSQHDLL
FT                 FSSLDFDATPIPKIKIYRDYVNFNAPALEVAIQLVPWDNMHSIDDPDELLR
FT                 FFNDHLKRIHDHYIPLRTSCGRRQNNTWFDYDIRKAILERDLAYRDWLNAP
FT                 SDSKTQVKRRYKLLRNRTNTMIKQKKALHLSGFLDSRLPAKTLWQRIKLVG
FT                 AAGKENASADCEFDPNDVNRMFLASYISNTPSDTSTFLSQDHPQSFSFRPV
FT                 YDWEIVNAVWDIKSNATGLDGLPIRFIKIVLPLILQQVTYIFNKFIESSCF
FT                 PSCWKHSKILPLRKKPHLNTLENLRPISILCALSKVFEKLMAQQISSFIAE
FT                 NHLLSDCQAGFRQGQSIKTATLRVYDDLAATIDKRGSAILLLLDFSKAFDT
FT                 ISHRKMCKKLERQFNFSHSAVRLVESYLNGRTQAVYCGDQVSEIGVVTSGV
FT                 PQGSVIGPLLFCCYINDLPTVLRWCSIQIYADDVQLYIKRLGPCSRELIRM
FT                 INEDLVRVAEWSDRNELRVNHSKSKALFIKGRRRNTILTDSLPTITIKGQP
FT                 IEWTDKSMNLGFVFQSDLEWDGLVNQQCGKIYGCLRTLYSTTSSARTDVRL
FT                 KLFKALILPHFLFGDALHVTPSAYCMDRLRVALNSCVRYVYGLNRYSRVSH
FT                 LQKNLLGCSIQHFYAYRSCIFLWSLAKSQSPIALYQKLIPSQSRRSKNFIV
FT                 PLNNTTSYASTMFVRGVVNWNSMPPVIKHSTSEANFKRGCLDFWNCRQ"
XX
SQ   Sequence 4205 BP; 1218 A; 940 C; 894 G; 1152 T; 1 other;
     acaccggcta gcagaaatgt gtagctaata cgagcgcgca ttaaacaacc ctgaaagtgg        60
     tgttatccgt cgcgtttttt tcccgaagtt atatccgtag accctgttga ttgtccgtac       120
     gsgttatcct gctgatgtgt gtccggattg gttcagaata accgaaacaa aattccgtca       180
     aatcctcacg cggtgttgat atcgttcact attgtttgcg atttactcat ctagtcccct       240
     tcgttacaca tacatacgga gcaacaatga cgaccaaacg cactccgccg tcaaacatca       300
     acaacgttgt gaagcgtcca agaaccggcg aggatggcga aaccgatggg aactcgctca       360
     cactggactc tgctgttcgc atgctgatga agcaattcaa tgaaacaaaa ttgctgatcg       420
     atgaaatgcg caccgaaata aattctaaaa ttgacgcagt gaaaaatgag cttgagggga       480
     aactgactgt tgtttcgaac gatatcaact cactaaaagc agagtgtgca tcaaaatttc       540
     aaaccagcaa tgccatgatt aatggtttga ccgttagggt tgacgaaata tcctcggcaa       600
     tggataatct gggtaacagg aacgagctca ttctcagtgg aatcccgtat ctgcgaggtg       660
     aggacctgat gaagcacttc tcggccatat gtatgcagct tggaatagac gaaagatcga       720
     caccatcggt agacattagg cgtctcaaat ccggagcaat gaacgacgga gacattagcc       780
     tggtgttggt acaatttgca ctgcgaaacc ttcgagatga cttctacagt gcataccttc       840
     ggaaacgtga tcttcagctg aatcatctgg ggataaactc tacgcgacga gtgtacgtga       900
     acgaaaattt ggcggcagtc ccgcgtaaga taaaagtcgc agctgtgcgt ctgaaaaaag       960
     cgggtaaact ggcctctgtg tataccaaga acggaactgt catcgtgaag tctactaccg      1020
     cggctcagcc catcgttatc aattccgagg aacaactgaa tcaattttcg aactaagtat      1080
     tttaatctgt attccactat tagagtttgt tttatgttgt attattgtga agattgtgta      1140
     atgttgataa ttaaaaaaag tgttctcttg cagcccccta aaaattgctt cctcctacgt      1200
     ttttctctat gccctcgttg aacaaccaca ccctgacgaa catccctggt gcagtgatga      1260
     atgcggtact tctcccggga aaattgaacg tgtgtcatgg taatgcgcag agtatctgcg      1320
     ccagaagatc gaccaaaatg gaagaagtga gcaatatgct actaaattct gtagtcagca      1380
     tagcatgttt taccgagtct tggttgtctc caaagattgc cgatcggagt attgccattc      1440
     ctggattcaa aatagcacgt aatgatcgac tgtatatgcg tggcggggga atcgtaatct      1500
     attacaagga acatctacga tgccataaag tctttgaaac cgtattacaa cgcgattctg      1560
     aagataaaac agaatgcttg gcgctagttt tccatttcgg aactgaaaca ctgctgctca      1620
     tggccgttta caatcctcca gacaacgact gttcacgttt cctcgccgac aaactgtctg      1680
     acctctctgc tcattacgac accgttttgc tcattgggga ttttaacaca gatttatcat      1740
     ctcggagcaa taaacgagca tgtttcgaag cagtacttca gagctttgct atgacgtcga      1800
     ttggtgagga accaactttc tttcataaca atggatgctc gcagctagat ttgttcatta      1860
     ccagctgcaa tcagaaagtt ttacgtttca atcaggtaag ctttcctgca ctttcgcaac      1920
     acgatctgct cttcagctct ctggattttg atgctacgcc cataccgaaa attaagatct      1980
     atcgtgatta cgtgaacttc aatgcaccag ctttggaggt cgccattcaa ttagttccct      2040
     gggataacat gcattccatt gacgatcctg atgagctact tcgattcttc aacgatcatc      2100
     tcaaacggat tcacgaccac tatattccac ttcgcaccag ctgtggtcgc aggcagaaca      2160
     atacatggtt tgattacgac attaggaagg ccattctgga acgtgatttg gcgtatcgag      2220
     attggttaaa tgcaccgtcg gactcaaaaa cacaagtgaa acgccgatac aaattactaa      2280
     gaaaccgaac caacacgatg attaaacaga aaaaagcact tcaccttagt ggcttcctgg      2340
     acagcaggct accagccaaa actctctggc agcgcatcaa attggtaggt gcagctggta      2400
     aggaaaacgc ttcagcggat tgcgagttcg atccaaatga cgttaatcgc atgtttttgg      2460
     caagctacat cagcaataca cccagtgata cttcaacttt cctatcacag gatcaccccc      2520
     agagtttctc cttccgtcct gtgtatgact gggagatagt gaatgcagta tgggatatca      2580
     agtcaaatgc aacgggtctc gacggtttgc caatacgatt cataaaaatc gtgcttcctt      2640
     tgattttaca gcaagtcacc tatatcttca acaagtttat cgaatcgtca tgttttcctt      2700
     cttgttggaa gcattcaaag atactgccat tacggaaaaa gcctcacttg aacacgcttg      2760
     aaaatctcag gccaattagc atcttatgcg cattatcaaa agtttttgaa aaacttatgg      2820
     cgcaacaaat atcgtctttc atcgcagaga atcatcttct gtcagattgt caagctggct      2880
     ttcgccaggg ccaaagtatt aaaactgcaa ctctacgcgt ttatgatgat ttggccgcca      2940
     ctattgataa gagaggatct gctattctgc tactgctcga tttttccaaa gcgttcgata      3000
     caatctcaca tcgcaagatg tgcaagaaac tagaaaggca attcaacttt tctcacagtg      3060
     ccgtgcgttt ggttgaatcg tatctaaatg gaagaactca agctgtttat tgtggagatc      3120
     aagtttccga aattggggtg gtaacttcgg gtgtgccgca aggttctgta atcggtccac      3180
     tgttgttctg ctgctacatc aacgatctcc caacggtttt aaggtggtgc tcgatacaaa      3240
     tctatgctga cgatgtccaa ctctacataa aacggttagg accatgttca cgtgaattga      3300
     taaggatgat taacgaagat ctagttagag tcgctgaatg gtccgatcgt aacgagctcc      3360
     gtgtgaatca ttcgaaaagc aaagcactgt ttatcaaggg tcgtcgtcgc aacactattc      3420
     tcaccgattc attacctact ataacaatta agggacagcc tattgaatgg acggataaat      3480
     cgatgaatct tggttttgtg ttccagtctg atctggaatg ggatggcctc gtcaaccaac      3540
     aatgtggtaa aatctacggt tgtctgcgca cgctctacag taccacctca tctgcacgca      3600
     cggacgtgcg actcaaacta ttcaaagcgc ttatactgcc acatttctta tttggagatg      3660
     ctttgcatgt caccccaagt gcatactgca tggacagact acgagttgca ctcaacagct      3720
     gtgtacgata tgtttacggc ctcaaccgtt atagcagagt gagtcatcta cagaaaaact      3780
     tgcttggatg ttcaatacag cacttttacg cataccgatc ctgcattttc ttgtggagtc      3840
     tagctaaatc tcaatcccca atagcgctgt atcagaaact aatcccatct caaagccgcc      3900
     gatcgaagaa tttcatcgtt ccgttgaaca acacgactag ttacgcaagt acaatgttcg      3960
     tcagaggtgt ggtgaattgg aattccatgc ctcccgtgat caaacactca acatcggaag      4020
     caaattttaa gaggggctgc cttgattttt ggaattgtag acagtaagtt aagaaaagat      4080
     aattttaata atgttagtag acataagtat tgtatgtaat ggaacgtttt acgacacgga      4140
     ggtagtattt gaaaagggct tcccttacgc tgcctaatga ataaacaaac aaacaaacaa      4200
     acaaa                                                                  4205
//
ID   Kiri-16_DTa repbase;    DNA;    INV; 3310 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   03-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3310
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5927-5927 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1027..3042
FT                 /product="Kiri-16_DTa_2p"
FT                 /translation="NVDVVCVSETWFVSGYSDVPFECDGYVLYRSDRVTHA
FT                 GGVAIYVSNKYSSKLIQSNPIDSRVEYIFFYKRWKRYKTESLHIIFKQLRN
FT                 LVTNLISSSKSRFYNNKFASAETPSQVWKDLRSLGIGKQKAVAKSDLDVDA
FT                 LNKQFSEVPSLIPPQNMYLNSTTSCDNIFSFMCVRPCDVLECILKVKSNAE
FT                 GLDNVSPKFIKMLLPKLVYHITHIFNTVFTTSMFPDCWKIAKILPIPKSKN
FT                 EFRPISILPFLAKSFEQLVALQMQTFLENNQLLSCKQSGFKKHRSCTTAIL
FT                 KISEDIRQNIDDSKVTLLTLLDFSKAFDSINHEILCTKIRNMYNFSASAVS
FT                 LIRTYLSYRLQAVVSGSLKSSFLPLTQGVPQGSVLGPLLFSLYVNDLPKCI
FT                 SICDVHLYADDVQLYVSRPLSQISECIRISNNEIKQINNWADANGLRLNPA
FT                 KSKCLLIYKKSINLSSLPKIQVKNVEIDFVXRATNLGIEFNSTLTWDDHVT
FT                 KATGKSYGVLRQLSLTQKLIPQNIRMLVAKTCIIPILFYGIEIFGSCNATS
FT                 MRKLQVAFNSIARYVFNVDRRNHIXSHANKIFDLSFESWIKLKTLLFLHKL
FT                 LVRKEPKYLHEELQLASSARTNNIVCKRLKLAMTEKHFFIQAVRYWNDLPN
FT                 HLKCIRNEAHFKTTLLNYLKGTS"
XX
SQ   Sequence 3310 BP; 1028 A; 692 C; 598 G; 989 T; 3 other;
     ggttcttcca gagggaaagc gtttaaaaga agcctctggc tctaagcgcg gccgcccttc        60
     agacgcccca atgacacccc ctcacctttg ctaatagcgg ccataaatag ccgctttgat       120
     gaacaagctc tgctgataaa gtccaccatc cgcgaggttg aggataggat gctcgaggtg       180
     ctgaaggaaa ggcttctagg tgtgaccact gagatgaatc acatggccga tcgcatgtta       240
     aagctggaga gggaggtgga ggagctgcgc tccctgaaat cccaaattgg cactatgcaa       300
     gttaaacttg acgcacaacg cgccggagtc tcctttgtgg caggcgaaaa ttttttaaac       360
     ctttccccca gagtccgaca ttttcagggt ccggaaatcg caaaattccc tggtggaccc       420
     tccaattcta gtcaaattag aaacgacaag ggaaaaagtg tcccttcttc gcgcactggg       480
     tgaataccga cgaacaacaa aacaacaact gagcatacac ctgttgggct ttgactcgcc       540
     ggccgctctc tacgttaacg agcagctttc gagagataat ttcattatgc acgtgaagtg       600
     cagtgagaga gataacatcc acattatcca gcagcttgat gagctctcag cgttctctgc       660
     tgctgagtca gctctctccc tctccggatc aggtgccctc cttgctctct catgatcaaa       720
     atagctttcg tcaataactt ctcctatgca gttgaactcg ttaagagtat agtttttaag       780
     agtaattcta tctttctatt tggaatctct ctttatttaa atctagcttg tgccttctca       840
     attcatatgt gcgtttccca attttccgta tatcttaata ttaatgcagg tcaacacaaa       900
     taatgcatca gcgagcagtc tgcttaaatt ctctgtaaac aaaaagtggg gttgacggtt       960
     gttcacataa atgctcaaag cctggtcaga aaaatggatg agtttaggga actatttgtt      1020
     ggttgaaatg ttgatgtggt ctgtgtttca gaaacatggt ttgtcagtgg ctatagtgat      1080
     gtcccttttg aatgtgatgg ttatgtattg tacagatccg acagagtaac ccacgcaggt      1140
     ggtgtagcca tttatgtaag caacaaatat tcttcgaaac ttattcaatc aaatcccatt      1200
     gacagcagag ttgaatatat ttttttttat aaacgctgga aaagatacaa aaccgaaagt      1260
     ctgcacatca ttttcaaaca actgagaaat ttagtcacaa accttatctc ctcttctaaa      1320
     agtagatttt ataacaataa attcgccagt gcagagaccc ctagtcaagt ttggaaggat      1380
     ttgaggagcc tggggatagg taaacaaaaa gcagtggcta aatcagacct tgatgtagat      1440
     gcccttaata agcaattttc cgaggtccct tctctcattc caccacaaaa tatgtacctg      1500
     aactcaacga catcctgtga taatattttt agctttatgt gtgtacgtcc atgtgatgtt      1560
     cttgaatgta tacttaaagt aaaatcaaac gccgaaggcc tagataacgt tagtcccaag      1620
     tttataaaaa tgttgctccc gaaattagtt tatcatatta cccacatctt taatactgtg      1680
     tttaccacct caatgtttcc tgattgttgg aaaatcgcaa aaattctgcc catcccgaaa      1740
     tcaaaaaatg aatttagacc aatatccata ttgcccttct tagcgaagtc ctttgagcag      1800
     ctagttgctc tccagatgca aactttcctg gaaaacaatc aactccttag ttgtaagcaa      1860
     tcaggtttta aaaagcacag aagttgtaca actgccattt taaagatatc cgaagatata      1920
     cgccaaaata ttgatgacag taaagtaacc cttttaacac tccttgactt tagcaaagct      1980
     tttgactcga taaatcatga aattctctgt acaaagattc gcaacatgta taatttctcg      2040
     gcaagtgcag taagcctcat ccgaacatat ctttcctaca ggttgcaggc cgtkgtctcc      2100
     gggtcgctta agtcatcttt tctacccctc acacagggag tcccacaagg ctcagtttta      2160
     ggtccgcttc ttttctcgtt atatgtaaat gacctcccta aatgtatctc tatatgtgat      2220
     gtgcaccttt atgcagatga tgtccaatta tatgtcagtc gtccgctaag tcaaattagt      2280
     gagtgtatca gaataagcaa caatgagatt aaacaaataa ataattgggc tgatgcaaac      2340
     gggctaagac taaatccagc caagtccaaa tgcctattaa tatataaaaa atcaattaat      2400
     cttagctccc ttccgaagat ccaggtaaaa aatgttgaaa tagactttgt tgmgcgagcc      2460
     acaaacctag gaatagaatt taactccact ttaacttggg atgaccatgt tactaaagcc      2520
     actgggaaat cgtacggagt actcaggcaa ttatctttaa cccaaaaact aattccgcaa      2580
     aatattagga tgctagtggc gaaaacctgc attatcccaa tattgttcta cggaattgaa      2640
     atattcggat catgcaacgc cacaagcatg cgaaagctac aagttgcctt caactccatt      2700
     gcgcgatatg tttttaatgt agaccgtagg aatcacataa maagtcatgc taataaaatt      2760
     ttcgatctaa gctttgagtc gtggattaaa ttgaaaacct tgctatttct gcataaactc      2820
     ctagtcagaa aagagccaaa atacctacat gaagaattgc aattggcttc ttcggccaga      2880
     acaaacaaca ttgtctgcaa aagattaaaa cttgcgatga ccgaaaagca cttttttatt      2940
     caggccgttc gctattggaa tgacctccca aaccacttaa aatgcatacg aaatgaagcg      3000
     cactttaaaa caactctttt aaattacttg aagggcacaa gctaatttta attttaactt      3060
     taattttatt agttttactt tttcttcttc ctttttaaat tttctttttt tctctaccta      3120
     ttttttaagc atctatgtaa tcttctgtaa aatgaatttg tttctaaatg tcaaaataat      3180
     tattgtttct ttaaatgata ttgtacctct agttcctaag taattttgta attaccacaa      3240
     agtgaccgat gttaatcaaa aagacatagt cttacatcat acgggataat aaataaaaat      3300
     taaaattaaa                                                             3310
//
ID   Kiri-17_AAe repbase;    DNA;    INV; 4545 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-17_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4545
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 712-712 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           330..1115
FT                 /product="Kiri-17_AAe_1p"
FT                 /translation="MSKHGKRKPNNNNISKRTWENMNKSDSQIDSYDDLVS
FT                 RMQCMFDAANAKIEDKIDTCVEELKSEISDLRDEVQRLKDECGRDIDNLAE
FT                 SVSQLKKDVNFNRGCIERAGRTNELLITGVPYTPDECLSVFVQKLSTVLGY
FT                 QDVPLIQPKRLARSPIAAGSTPPILMQFAFNISRNEFYSRYLATRNLSLLH
FT                 LGFNVNTRIYINENLSEDARRIKGAAIKLKKTGKLHNVFTRDGIVFIKLHE
FT                 GAAALPVQTIDQLNATVNPSS"
FT   CDS           1551..4397
FT                 /product="Kiri-17_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANAMGTNARMNEGIPRAVMNAALSNNNMNICHINIQ
FT                 SLCARQMSKFSEFKDCFENSKIDIICLTESWLSDSVPDDIISIEGYKIVRN
FT                 DRMYSRGGGICVYFKSYLNCQIIARSELLVGVGNVNRTEYMLIEVNLSSKK
FT                 LLVGIFYCPPRIDCSEVIFNLLCDHSLQYDEILLVGDFNTDFLRDNSRSNR
FT                 LRSTFDYFGLSCVNSEPTHFFAGGCSMIDLLLTVNQDFITKFHQIAAPGFS
FT                 RHDMILASLNVSRSLGERHSWFRDYKSINYTALCEAVDCIDWSLLYSITNS
FT                 DLALEFFNSHLRNLFERFVPLRYSQIKNNSQWFNNNIRMAIVERNIAYRVW
FT                 KLSRTVEDHAQFKRLRNRVTSLIKLAKSDYVSQSVGPTDSQKTIWNKLRNL
FT                 KVIADRDDDDCFNSSCDEINEHFCTNFTNDSSTIPTFPSNEEGFTFLLTNE
FT                 LETGIAINSIKSDAIGLDNIPLKFVKLILPFVIQQITYIFNLIIRSGNFPI
FT                 AWKETKIIPIKKKKRNNDLNNLRPISILCGLSKVFEKILKNQIQNFLHNYD
FT                 LLSPFQSGFRAEHSTTSALLKVHDDIHKTVDKKGLAILLLIDFSKAFDRVS
FT                 HCKLLKKLSCEFNFSTQALKLVKSYLCNRKQSVYVNDSRSQPSVILSGVPQ
FT                 GSVLGPLLFSMFINDLPRILKFCKIHMFADDVQLYICSNNLDVHDMANLVN
FT                 SDLSRLLKWSEKNLLLINGSKTKAMLITRTARPALLPSIHLGSELIGFSDR
FT                 LKNLGVVFQNNLEWDDHINAQCGKIYAGLRRLRFTASMLPCNVKIMLFKSL
FT                 LLPHFMYGLELTLNASARCLDRLRIALNCCVRWVFNLNRFSHVRHLQSRLL
FT                 GCSFYQFFKLRSCLMFYKIINHTYPHYLKEKLQPFRSDRNRNYLIPQHNTS
FT                 HYSGTFFVRGVVYWNQLPTTIKNINSFNVFRQNCTEWLNGGNQHM"
XX
SQ   Sequence 4545 BP; 1359 A; 832 C; 860 G; 1494 T; 0 other;
     gagtttctga agggatgagc gtgagttgtg agtgaacttg tgacgggcag ttctaaacgg        60
     aaaattctac atgaaccgtt gatatatctg cattgacttg cctgttgccg tgcgatttaa       120
     tcggtgtttg ttcgttagtg actggagtac gattattaca tgatgtaccc gatcttttag       180
     tgcaactaaa aagttgatat tgtggtccag cctcacagct cttcatatcc gccatcccca       240
     tttcatatct gtcattggtg aaccaaatac actcacctat atccaccaca caatagtcac       300
     tcagcaaatt tactgagctc aaccgaagca tgagtaaaca cggcaagcgc aaacctaaca       360
     acaacaacat tagcaaacgt acgtgggaga atatgaataa atcggacagc caaattgact       420
     cctacgatga tctggtctct cgaatgcagt gtatgtttga cgccgctaat gctaaaattg       480
     aggataaaat cgatacctgt gtagaagaat taaaatcgga aatttccgat ctacgcgatg       540
     aagtgcaacg cctgaaagat gagtgtggcc gggacatcga caacctagct gagtccgttt       600
     cgcaactaaa aaaagatgtt aacttcaaca gaggatgcat tgaacgagct ggaagaacta       660
     acgagctctt aataacgggc gttccgtaca cgccggatga atgtctctct gtttttgtgc       720
     agaagttatc gaccgtgctt ggatatcagg atgttccatt aattcaaccc aaacggttgg       780
     cccgatcacc aatagctgct gggtcgacac ctcctatttt gatgcagttc gccttcaaca       840
     tttctcggaa cgagttctat tcacgttatc tggctaccag gaatctgtcg ctcttgcatc       900
     tcgggttcaa cgtcaacacc aggatctata ttaacgaaaa tctctcagaa gacgcacgta       960
     ggatcaaagg agcagctata aaacttaaaa agactgggaa gttacataac gttttcacca      1020
     gagatggaat agttttcatc aagctgcatg agggagctgc cgccttgcct gttcaaacga      1080
     tcgatcaact taatgcaacg gtaaaccctt cctcttaaga tcttctcttc catccaacgt      1140
     tgatccatgt ttcccatcat catgtatcca tgattccagc cttcctgaaa gtttgacctc      1200
     atccaatgaa gcttttcttt tttcccttga ttgcattcct gtgaatccga tccttgcatc      1260
     ccatgtatta ttccgtccta aaagtctatt catcatacgg tttcataatc gtttgctgct      1320
     gctgctgttg ttgcctgctg gatctgttgc tgctgttatt gttgccttgc tgattgatag      1380
     aattgttgaa ttttccaaaa cgaactgtgc tttattgaat ttgaagaatt tgtataaaat      1440
     tgtttagtag ttattaatta tgattcattt acatttattg ctgattgctg attcttttct      1500
     tgggggacct tcagtatttt tctgtcgtat ttcgttcttt ttacgcgcta atggctaatg      1560
     ccatgggaac gaacgctcgt atgaatgaag gtataccgag ggctgtaatg aatgctgcat      1620
     tgtctaacaa taatatgaac atatgtcaca taaacataca aagtctatgc gcacgtcaaa      1680
     tgagtaaatt tagtgagttc aaagattgtt tcgagaatag taaaattgac ataatttgct      1740
     taaccgaatc gtggctgtct gatagtgtac ctgacgatat aatttcgatt gaaggctata      1800
     aaattgttcg taatgataga atgtacagca gaggaggagg tatttgtgtg tattttaaaa      1860
     gttatttaaa ttgtcaaatt attgctcgct ctgaactttt ggttggtgtt ggtaatgtaa      1920
     atcgtacaga gtatatgctc attgaagtga atttgagttc gaaaaaactg ctcgttggta      1980
     tattttactg tccacctcgg atagattgtt cagaagtcat tttcaatcta ttatgtgatc      2040
     attccttgca gtatgacgaa attttacttg taggagattt caatactgat tttttgagag      2100
     acaattcaag atctaatagg ctgcgtagta cttttgacta ttttgggctt tcctgtgtaa      2160
     actctgaacc tactcacttt tttgccggtg gatgtagcat gatcgatttg ttgttaacgg      2220
     tcaatcaaga cttcataaca aagtttcacc aaattgccgc gcctggtttc tctcgacatg      2280
     atatgatctt ggcgtcgtta aatgtctctc gctctttggg agaacgtcat tcatggttca      2340
     gagactataa aagtataaat tacactgccc tttgtgaagc agttgactgt attgattggt      2400
     ccctgctata ctcaatcact aactcagatt tggctctaga gttctttaat tctcatttgc      2460
     gtaatctttt tgaacgcttt gtacctctcc gatatagtca aattaaaaat aattcacaat      2520
     ggttcaacaa caacatacgg atggcaatag tggaaagaaa tattgcgtat cgtgtttgga      2580
     agttatccag aactgtagaa gaccatgctc aattcaaacg tcttcgtaat cgagtgacta      2640
     gtttgattaa attggcaaaa tctgattatg tttcccagtc tgttggtcca acggattctc      2700
     agaaaacgat ttggaataaa cttagaaact tgaaagttat agccgaccgt gatgatgacg      2760
     attgttttaa tagctcgtgt gatgaaatca atgaacactt ttgtactaat ttcactaatg      2820
     attcttctac aataccaacg tttcctagta atgaagaagg tttcacattt ttattgacaa      2880
     acgaacttga aacgggaatt gcgattaact ctatcaaatc tgatgctatt ggtttggaca      2940
     acataccctt gaaatttgtg aaactcattc tgcctttcgt tattcaacaa ataacctata      3000
     ttttcaattt aattatacgt tcaggaaatt ttcctattgc gtggaaggaa accaaaatca      3060
     taccaattaa aaagaagaaa cggaacaatg atctaaataa cttgagacca attagtattc      3120
     tatgcgggct ttccaaagtt tttgagaaaa ttttaaagaa ccaaatacaa aattttcttc      3180
     ataattacga tcttttaagc ccctttcaat ccggttttag agctgaacat agtacgacat      3240
     ctgcgttact aaaggttcac gacgacattc ataagactgt ggacaaaaaa ggtttggcga      3300
     tattactttt aattgatttt tctaaggctt tcgatcgtgt atctcattgc aaattattaa      3360
     agaaattatc gtgtgaattt aacttttcca ctcaggctct gaagttggtc aaatcgtact      3420
     tatgtaaccg gaagcaaagt gtttatgtaa atgatagtcg ttcacaacct tcagttattc      3480
     tatctggagt tccacaaggc tcagtcttgg gtccgttact atttagtatg tttatcaatg      3540
     atttgccaag aattttgaag ttctgcaaga ttcatatgtt tgcagatgat gtgcaactct      3600
     atatttgctc caataatctt gatgtacatg atatggctaa tttggtaaat agcgaccttt      3660
     ctaggctttt aaagtggtca gagaaaaatt tacttctcat aaatggttct aaaacaaaag      3720
     ctatgttgat aaccagaact gcgcgaccag ctcttttacc cagcattcac ttgggttctg      3780
     aacttattgg attttcggat cgattgaaaa atttaggagt tgtctttcaa aataaccttg      3840
     aatgggatga tcacataaat gcccaatgtg gtaagattta tgctggtttg agaagattaa      3900
     ggttcacagc aagtatgcta ccatgtaatg tgaaaatcat gttatttaaa tcgttattac      3960
     ttccccattt tatgtatggt ttggagctta ctcttaatgc ttcagctaga tgtttagaca      4020
     ggctgcgaat agcattaaat tgttgtgtac gctgggtttt caatctcaat agattttcgc      4080
     atgtcagaca ccttcaatcg aggttactcg gatgttcatt ctatcagttt tttaaattac      4140
     gttcgtgttt aatgttctac aaaatcatta atcatactta tcctcattat ttaaaagaaa      4200
     agttgcagcc tttcagaagc gatagaaaca gaaactattt gattcctcaa cataatacat      4260
     cgcattattc gggtaccttc ttcgtacgcg gcgtcgtata ctggaatcaa cttccgacta      4320
     cgatcaaaaa tataaattcg ttcaatgtct ttcgtcagaa ctgtactgaa tggttgaatg      4380
     gggggaatca gcatatgtaa gttaacaaca gaaacttagt taaattagtt aaaaaagatg      4440
     aattgcttac ttccttaagt gcctagcgaa tgtagaaatt taaaagtatt agcttactct      4500
     acatgttttt ggaaataaat aaataaataa ataaataaat aaata                      4545
//
ID   Kiri-17_DTa repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   05-SEP-2021 (Rel. 26.10, Created)
DT   05-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4368
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5928-5928 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1285..4092
FT                 /product="Kiri-17_DTa_2p"
FT                 /translation="MANIITYSKTKSRTMVELLCKKTNGLKVCHINAQSLT
FT                 KKIEEFRYLFVNSGVDVVCVSETWFSSLVSDQLVSCDGYNLFRADRDGHAG
FT                 GVAIYLRKGLKAKLICINDASSLVECLFIELTGSSWRSKMLLGCAYRPNRT
FT                 IYYTDFISFFQDLSLTYNEILLTGDLNSNMLLEKHLSNSMETAAMYLVNSI
FT                 YATHFTSTCNTLLDVFFVSRLDNTLLYDQVSVPALSKHDLIFISYDIFIDD
FT                 TDQPPKTYRDFRTIDYVNLNFNCNACDWNAMYSLFSVNEQIDFLQENVLRL
FT                 YNLCVPVKIITPKRFKHEWFNRKICIAIRQRDEAHEKWKRYKTSNFCNQFK
FT                 TARKNVNKLIYTAKSDYYNRKFKDALVAGKTWKELKALGIGKQKAIADLDI
FT                 NVNELNKKFVQCEVPEVSYTDLSEHTEYNDYCDISCDSRFSFSCVNECDVL
FT                 QSVLNIHSNAVGLDRIDPKFIKIILPKILPHITFIINTMFTTSHFPDQWKD
FT                 ARIIPIPKANKDFRPISVLPFLAKVGERLIADQINKYIEEQNFLNKAQSGF
FT                 RKSRSCTTALLKIVEDIRKKLDEGNVTLLTLLDYSKAFDTVNHDIICSKLA
FT                 NKFMFSNTAQKLIRSYLTGRRQAVVTPTESSSFLVLTRGVPQGSVLGPLLF
FT                 TMYVNEIPNIISSCNVHMYADDVQMYVSRPLCKVDECVSVVNKELAVLKNW
FT                 SFKNGLQLNPSKTKCVVIHKTEIDTSVLAPLKIGNETIEYVEKVKNLGITF
FT                 NKSLKWNDHITQVVGKIYGCLRALNYTQSFIPENCRLLIAKAIVTPILFYG
FT                 VEIFGNSDAQSKKKLNVVFNSVARYVFNVKRGHSISRFSHKIFDLHLSDWI
FT                 KLRALLLLHKIINTKEPNYLYEELIFTSSRRTNNVICRRYRLSVSENQFFV
FT                 YAVRFWNELPHRLKTIKSVPQFKHALLTHYKN"
FT   CDS           join(3..989,993..1166)
FT                 /product="Kiri-17_DTa_1p"
FT                 /translation="TKVAFFISNHSEKGKQFVLRILKQIHNLCDSAQQTNK
FT                 LTYILIRFLTPQLRTLDKRQTRKERTTQATQNLTQCTKKTTIMAPAPPKRQ
FT                 RTTTDLKGGHDSEALSPMFLDLLSKRFAEQAEHISASIQSAENHIMERIMG
FT                 LLTDQVGNLAGVVEKLNQRVAQLEEQLSRRGDQLEGDVEGVPALMVKVDQL
FT                 EAKLQASEAAHANAEIVSELRIHGVPFQEGENLKTVFNTLCFALNITPALK
FT                 LNSIHRIRRRIENNTTVDPAIIVKMEHVSGKIELLRRIGQFRREHKKQLSL
FT                 EQLGFDSQVPFYVNEQLTRYNYEIFKAAMGMKNESFSLFFVAEPLFSLRYL
FT                 QTLSPYELSTQKSLRCWRRIRIKMFHKIIFSLNVSLVSFMYLLV"
XX
SQ   Sequence 4368 BP; 1465 A; 781 C; 826 G; 1294 T; 2 other;
     aaacaaaagt tgcctttttc atttccaatc atagtgagaa aggaaaacaa tttgttttgc        60
     gtattttaaa acaaattcat aacttgtgtg actcggcgca gcaaacaaat aaacttacat       120
     acatattaat ccgttttcta acgccgcaat tacgaacact cgacaaacgt caaacacgaa       180
     aagaaagaac aactcaagcc actcaaaatc tcactcagtg cacaaaaaaa acaacaataa       240
     tggcaccagc accgcccaaa cgtcagcgaa ctacaactga tcttaaggga ggccacgact       300
     ctgaagcact gtctccaatg tttctcgatc tcctatccaa acgctttgcg gagcaggctg       360
     agcatatatc tgccagcatc caatctgctg aaaaccacat tatggagcgc ataatgggtc       420
     tgttgaccga ccaggtcggg aatctggctg gagtagttga gaagctgaac cagcgtgtgg       480
     cacaacttga ggagcagctt agtcgtcggg gagaccagct ggagggcgac gtcgagggag       540
     tccccgcact tatggtcaag gtggatcagc tggaagcaaa gctgcaggca agtgaggcgg       600
     cccacgcaaa tgcagaaatt gtttctgagc tgcgcattca tggagttccc tttcaagaag       660
     gagaaaacct gaagaccgtc tttaacactc tctgttttgc acttaacatc acaccggccc       720
     ttaaactaaa tagcattcac cgaatccgac gacgtatcga aaataacacc acagtcgacc       780
     cggccataat agtaaaaatg gaacacgtga gcggcaagat cgaattacta cggcgaattg       840
     gacaatttcg ccgcgaacat aagaaacagc tgagtctaga gcagttgggc tttgactctc       900
     aggtcccatt ttacgtgaat gaacagttga ctcgttacaa ctacgaaatt tttaaggcag       960
     caatgggcat gaaaaacgaa agcttctctt agctgttttt tgtcgccgag cctttgtttt      1020
     cgttaaggta tctgcaaacg ctgagcccgt acgagttatc aacacaaaag agcttgcgtt      1080
     gctggaggcg aatcagaatc aaaatgtttc acaaaataat tttttcgcta aatgtctcat      1140
     tagtttcctt tatgtatttg ctagtatagg ttttgtattc ttaatttcat ttcttaagtg      1200
     taattgttta tttatgtgtc accatgtatt taattgtcag cgggcgctct taattagaat      1260
     agggattttt aaaaatcgat ttgaatggct aatatcataa catattccaa aacaaagagc      1320
     aggacaatgg ttgagcttct ttgtaaaaaa acaaatggcc tgaaagtatg ccatataaat      1380
     gcccagagtt tgaccaaaaa gatagaggag tttagatact tgtttgttaa ctccggtgtt      1440
     gatgttgtct gcgtttctga aacatggttc tcgtctcttg ttagtgatca acttgtatct      1500
     tgtgatggtt ataacttatt ccgtgccgat cgtgatggac atgctggggg tgttgcaata      1560
     tatcttcgta agggacttaa agctaaatta atttgcataa atgacgcttc cagtttggta      1620
     gaatgtttat ttattgagct aactggttct tcctggcgaa gtaaaatgct tttgggatgt      1680
     gcatacaggc caaatagaac aatttactat actgatttca tatcattttt tcaggattta      1740
     tctttgacgt ataatgaaat tttactaacc ggtgacctta acagtaacat gttattggag      1800
     aagcatttgt ccaatagtat ggaaactgct gcaatgtacc tggtaaactc aatttacgca      1860
     acacacttca ctagtacctg taacaccctc ttggacgtat tctttgtaag cagactggat      1920
     aacacacttt tatatgacca ggtctcagta cctgccctct caaaacatga tcttattttc      1980
     atctcttatg acatatttat agacgacact gaccaaccac ccaagacata tagagacttt      2040
     agaacgattg actacgtgaa tttaaatttt aactgtaatg cgtgtgattg gaatgctatg      2100
     tatagtttat tttctgtaaa tgaacaaata gattttctcc aagaaaatgt cctgcgtctg      2160
     tataacttgt gtgttcccgt taaaattata actcctaaac gatttaagca cgaatggttt      2220
     aacagaaaaa tctgtatagc aattaggcag agagatgagg cccatgagaa atggaaacgg      2280
     tataaaacta gtaacttttg caatcaattt aagactgcta ggaaaaatgt caacaaactg      2340
     atatataccg ctaaaagtga ctactataat agaaagttta aagatgctct agtggcgggt      2400
     aaaacctgga aggaacttaa ggctttagga ataggaaaac aaaaagctat cgctgacctg      2460
     gatataaacg ttaatgagct aaataagaaa ttcgtgcaat gtgaagtacc tgaggtttcc      2520
     tatactgact tgtctgagca tactgaatat aatgattact gtgatatatc ctgtgatagt      2580
     agatttagtt tttcctgtgt taatgagtgt gatgtcctgc aatctgtttt aaacattcac      2640
     tcgaatgctg tcggacttga tagaatagac ccgaaattta taaaaattat cttaccaaaa      2700
     attttacccc acataacgtt cataataaat acaatgttca ctacatcaca tttccctgat      2760
     caatggaagg atgcaagaat catccctatt ccgaaagcga acaaagattt tcgtccaata      2820
     tcagtcctac cattcttggc taaagtcggc gaacgtttaa ttgctgacca aataaataag      2880
     tatattgaag aacagaattt tttaaataag gctcagtcgg gttttaggaa atcgaggagc      2940
     tgtacgacag ctctattaaa aattgtagaa gacattagga aaaaactaga cgagggtaac      3000
     gtaacactac tgacactgct ggattatagc aaagcttttg acaccgtgaa tcacgatatt      3060
     atatgttcaa aactagcgaa taagttcatg ttctctaata cggcacagaa gttaattcgt      3120
     tcctatttga ctggtagaag gcaggcagtt gtaacaccaa cggaaagctc atccttcctt      3180
     gtgctgacaa ggggtgtccc tcaggggtca gtgttaggtc ctttgttgtt taccatgtat      3240
     gttaatgaaa ttcctaatat aatatcttcg tgtaatgtcc atatgtatgc agacgatgtt      3300
     cagatgtatg tatctcgtcc gttgtgcaaa gttgatgaat gtgtttctgt agtcaacaag      3360
     gagctagctg ttttaaaaaa ttggtctttc aaaaacggtc tccagcttaa ccctagcaaa      3420
     actaaatgcg ttgtaatcca taaaaccgaa atagacacaa gcgttttggc accacttaaa      3480
     atagggaatg aaaccattga gtatgtggaa aaagtaaaaa atttaggtat tacttttaat      3540
     aaaagtttga agtggaatga ccatatcact caggtggtag ggaaaatata tggatgcctt      3600
     agggctctta attataccca gtctttcata ccagagaact gccgtctttt aattgcaaag      3660
     gccatagtca ccccgatttt attttatgga gttgaaatat ttggtaatag tgatgctcaa      3720
     agtaagaaaa agctaaatgt tgtatttaat agtgttgcta gatatgtgtt taatgtaaaa      3780
     agggggcact ccatctcgcg tttctcccat aaaatatttg atcttcacct gtccgactgg      3840
     attaaactta gggcattatt gcttcttcat aaaattataa ataccaagga gcctaactat      3900
     ttgtatgaag aactgatttt tacatcttcc cgaaggacaa ataatgtaat atgtcgcaga      3960
     tatagactgt cagtctctga aaatcagttc tttgtctatg ctgtacgttt ttggaatgaa      4020
     ctaccacatc gcctcaaaac aattaagagt gttccacaat ttaaacatgc cttattgaca      4080
     cactacaaaa attagaaata aataaatata tatatataaa aaaaaaaaaa ataataaaaa      4140
     taaaaatata aattcaaaat tccaaaaaaa aaaataaaat aataatttta aaaaatttta      4200
     aataataata atagaataat atttaatgaa atctaatgaa atgtataagg ttaacagtag      4260
     gcatagaagt tataagctaa agttatattt tgtataccak tcattgtgac tagcgctata      4320
     aatataagta atcacctgts gcgctaggaa aatattaata aataaata                   4368
//
ID   Kiri-17_HMM repbase;    DNA;    INV; 2056 BP.
XX
AC   .
XX
DT   27-FEB-2013 (Rel. 19.10, Created)
DT   27-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-17_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2056
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2813-2813 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1650
FT                 /product="Kiri-17_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="VVNIPNKVDTLFDLKSRPKRNATVLEFREISDDDIRK
FT                 NIKAIHSDAIGSDGISRKMLTLSFHMILPVLSHIFNSSLSSCSFPKVWRSS
FT                 QVIPIPKIPTPSLYTHFRPISILPFLSKVLERIIHQQLSQFLAKNNTLSQF
FT                 QSGFRPGHSTTTALIKVCDDIRCGIDNKQVTVLVLLDFSNAFNTIDFDILL
FT                 AILEHINMSDNVIKWFHSYLHNRQQSVRYDNNITTPRCLEVGVPQGGVLSP
FT                 LLFSIFINTLTDLLSVPFHLYADDLQIYVSSPAEAISEAIERINRNLQIIF
FT                 EWGKSYGLNLNPTKSQTIIIGTQKQVAKINHTHLPPVMFDCTPISYTKSVK
FT                 NLGIIMDNTLSWTSHVSNISRKIFATMGSLRRWKNFLPIKTKITLATSLLL
FT                 PIIDYADPCCLDLTQLHLDKLERLQNLCIRYIFNLKKFDHISSYRNKLQWL
FT                 TVRHRRYFHVLCTLYSILFHPNTPHYLKERFTFLGSDTPTHLNLRSNSDNK
FT                 LKVPMCNTLSFNDSFTFKSVILWNDLPSCIRHCKSLHVFKKSLKHYYLAKQ
FT                 NNS"
XX
SQ   Sequence 2056 BP; 622 A; 436 C; 270 G; 728 T; 0 other;
     gttgtcaaca ttccaaataa agtagacact cttttcgatc ttaagtcacg tcctaagcga        60
     aatgcgactg ttcttgaatt tcgggaaatt tcagatgacg atatcagaaa aaacattaag       120
     gcaatacatt cggatgccat cggaagcgat ggtattagtc gtaaaatgtt gactctatcc       180
     tttcatatga tccttccagt cctgtcccac atctttaact cttcgttatc ctcttgttca       240
     tttccaaaag tatggcgctc ctcgcaggtt atccctatac ctaaaatacc tactccctca       300
     ttatatacac atttccgacc aatttctata cttcccttcc tttctaaagt acttgagcgt       360
     attatacatc agcaactatc acaatttttg gctaaaaaca acactctgag tcaattccaa       420
     tctggctttc ggcccggaca tagcaccact accgctttaa ttaaagtttg tgatgacatt       480
     cgttgtggta tagataataa gcaagtcact gtcttagtct tgcttgactt ctctaatgcg       540
     tttaatacca tagactttga catcttgctt gctattcttg aacacataaa catgtccgat       600
     aatgtcatca agtggttcca ttcctactta cacaatcgcc aacaaagtgt tcggtacgac       660
     aacaatatta ctacaccccg ttgtcttgaa gtaggagtcc cacagggagg ggtcttgtct       720
     cctttacttt tttcgatatt tataaacacc ttaaccgact tactttccgt cccttttcac       780
     ctttatgctg atgatctaca aatttatgta tcatctcccg cagaagccat ctcagaagct       840
     attgaacgaa ttaaccgcaa tcttcaaata atatttgaat ggggcaaatc atatggctta       900
     aacttaaatc ccaccaaatc ccaaactata attattggca ctcaaaaaca agttgcaaaa       960
     ataaatcata cacatctacc acccgttatg tttgattgta cccctatatc ttacacaaaa      1020
     tccgttaaaa atttgggtat tatcatggat aacactttat cttggacatc acatgtttca      1080
     aatattagcc gtaagatatt tgccacaatg ggttctctaa gacgatggaa aaattttcta      1140
     ccgattaaaa caaaaataac attagccact tccctccttc ttcccattat cgactatgcc      1200
     gatccctgtt gccttgactt aacacaatta cacctagata aactagagcg cttacaaaat      1260
     ctgtgtatca gatatatttt taatttgaaa aaatttgatc atatatcctc atatcgcaat      1320
     aagcttcaat ggttaacagt tcggcatcgt cgatatttcc atgttctttg cactctctat      1380
     tctatacttt tccatcctaa cactcctcac taccttaagg agcgcttcac attccttgga      1440
     tccgatactc cgactcatct caacctccgc tccaacagcg acaacaagtt aaaggtacca      1500
     atgtgcaata cactaagttt taatgattcc ttcactttta aaagcgtcat tttgtggaat      1560
     gacttaccat cctgtatccg acactgtaaa tcgcttcacg tttttaaaaa atccttgaag      1620
     cattactatt tggcaaaaca aaataacagt tagtacattt ttttgttttc ttttaaagta      1680
     actatatatg tatatatatt tatttttctg tatattatgt atgtgtatat atatatatat      1740
     atatatatat atatatatat attatatgta ttagtattat atgtaaatta tatcacattt      1800
     gtaatgttgt atgtttattt tctgattcgc tattactgta attattaaca aactttttat      1860
     gcaccacaca gttcttatat tattacttat tttttgtaaa tgtttacgct caaggttacc      1920
     tgtaagagat cactaatagt gataaggccg cccttgcatg ctagttatat tactatagct      1980
     atcgtttttc ttttttttat tgtacttata gtttgtgtat gcaataaaga attttatcta      2040
     tctatctatc tatcta                                                      2056
//
ID   Kiri-18_AAe repbase;    DNA;    INV; 4597 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-18_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4597
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 713-713 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..1144
FT                 /product="Kiri-18_AAe_1p"
FT                 /translation="MNTNRALTRAAHTKMSKDRPTLAVPLGSTSNDNQNKK
FT                 RSREDLDRTENDVESFDQLLVRIKQMIDEGNAKIENKIESSNAALVTEIST
FT                 LRDEVNQLKVDYARDFNSLCESHEKTAEQVRRSKDNAGKILRSNDLILTGV
FT                 PYRPTEKTDEILREIATTLGYNDSDVPPVFTKRLARIPIAAGSTPPILLQF
FT                 AFRASKDEFFHRYFASKNLSLLHLGFDTDKRIFINENLTESTRNIKGAALK
FT                 LKRNGHLQNVFTKDGTVYVKPLEDVPAQPVFSLDQLKIFGGRN"
FT   CDS           1548..4397
FT                 /product="Kiri-18_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMPVSHTTNIARTQSSIADIPRAVMNVALRDDCLNLC
FT                 HLNAQSLCARQLSKLDEFKRCFANSKVDLICVTETWLNENITDSTVAVEGY
FT                 SILRNDRMTGRGGGICIYYKSGLNCRVLDNSDMLSGHASVDRTEHLFIEVR
FT                 VSEDKLLLGVIYSPPDVDCSYLIDQKLSELSLDYEKIVLIGDFNTNLRKNC
FT                 PKTTRFCEVLDNFGMFCVNTEPTHFYPGGSSLIDLLITNDINFVLNFNQVS
FT                 APTFSHHDIIFSSLNVLRYRNDNPRMIRDYSRIDYPSLQHYLNGIDWSLLY
FT                 SITDSDTALDFFNSVIIQLFDNLVPLRAPRHKNNAPWFNNDILNAMIARDV
FT                 AYREWIRSKNLLDHHQFKRLRNKVTQLINTAKSNYMSSNLESAISSKELWV
FT                 KLKRLNVTGSSNSSAKFHHSKDEINTFFGENFTRDSTHPSIPPSNSSGFTF
FT                 TPCSELEVANSIFSISSDAIGLDGIPLKFIKIILPFIITPLTYLFNLFISS
FT                 TKFPRAWKAAKVIPIRKKPAGSDLNNLRPISILCSLSKVFEKIVKTQIQEY
FT                 IQRFSLLSPYQSGFRSGHSTTSALLKVHDDIHQCIDKKGVAFLLLIDFSKA
FT                 FDRVSHAKLLHKLSHQFNFSRDAALLIKSYLCQRTQVVELDGSLSNTIFIL
FT                 SGVPQGSVLGPLLFSLFINDLPSILKNCSIHMFADDVQLYICSTDYNTYDL
FT                 AQLINYDLERLSKWSSSNLLPINSTKTKAMFISRRQIRATLPDLVINGDKI
FT                 DYVDKACNLGVIFQSNLEWDCQINAQCGKIYAGLRHLRLTANMLPVSTKLM
FT                 LFKSLLLPHFSYGSELVLNASAADFGRLRVSLNHCVRWVFNLSRYSNVTEF
FT                 QRQLLGCSFYRFFRLRCYITLFKIINHGPQYLVDKLQSFRSARVRNYILIH
FT                 HNSSHYSNTFFVRAINLWNQLPTDIKSISSLSRFRAECMSWLNEGN"
XX
SQ   Sequence 4597 BP; 1346 A; 902 C; 839 G; 1510 T; 0 other;
     agtgttctga gtgatggtaa gcggtagaac gtgagttgtt cgtggtcgca gttcagttga        60
     agtttttggc atgtaatgtg attccatgct acgtttttca ccgatgtagt gcttctttac       120
     tcgaactcct ttctatacga caagatagct gattccatcc tgcactagta atgtgagaaa       180
     agtgaaagtt attatcacaa ttcctggcat aaacttttca tcttccatat tgagactctc       240
     atattgtgtt gtgtactaaa ctacgtgtac taaaccatat ccactcactt ggatgaacac       300
     aaatagagca ctcactcgtg cggctcacac taaaatgagt aaagacagac caacacttgc       360
     cgtcccactg gggtcaacca gtaatgataa tcaaaacaaa aagcgctcac gagaggattt       420
     agaccgtact gaaaacgatg tggagagctt tgatcaacta ttggttcgca ttaagcagat       480
     gatcgacgaa gggaatgcga aaattgagaa caagatcgag tccagcaatg cagcccttgt       540
     tactgaaatc tccactctgc gtgacgaggt aaaccaactt aaggtcgatt atgcacggga       600
     cttcaatagt ttgtgtgaat cacacgaaaa aactgcagag caagtgcgac ggtccaagga       660
     taacgccggt aaaatactga gatcaaatga tctgattctc actggtgtac cgtacaggcc       720
     cacggaaaaa acagatgaaa tcctgcggga aatagctaca actcttggct acaatgactc       780
     ggatgttcct cctgttttca ccaaacgtct ggctcgtatt cctattgctg ctggttctac       840
     gccgccgatc ctgttacaat ttgcgttcag agcatccaaa gatgaatttt tccatcgtta       900
     tttcgcatca aaaaatctaa gcctacttca tcttggcttc gatactgata agcgtatttt       960
     tatcaacgaa aacctcactg aatctactcg caacatcaag ggtgctgcac tgaaactcaa      1020
     acgtaatggt catcttcaga acgtgttcac taaggacggt accgtttatg tgaagccact      1080
     cgaggatgtt cctgctcagc cggttttcag cttggatcag ttgaagattt ttggaggacg      1140
     aaactaaccc tatcctttat gaattctttg tattcctgtc aatgttacat ccttgactcc      1200
     tttcctaccg attccatgct gccttccttc ctaaaagtat ttcttcatct gccggtgatc      1260
     atcggtgctg acctgatgct gctgttgttg ctgctgtggg tgttgttgct gctgtggatg      1320
     ttgttgctgt tgtcaccacg ttttgcacac ctgtatcact gtacctgcgg tagcttttag      1380
     tagttataca actgaatttg cgatcaaaaa ccacattcta ataagttgaa ataagattag      1440
     tatgaatata aatgaatttg aaatgcatgt tatcccatta ttagatttag tgttcccttc      1500
     agttccccag cttatgctct cacgatcgtt cttgttatta cccttcgatg atgccggtta      1560
     gtcatactac caatattgca cgtacgcaaa gtagtattgc cgatattcca cgtgccgtta      1620
     tgaatgttgc cctacgcgat gattgcctaa atctttgcca tttgaatgct caaagtctct      1680
     gtgctcgtca attaagtaag ctcgatgaat ttaaacgttg ttttgctaac agtaaagttg      1740
     atttaatatg cgtaacggaa acatggctaa atgaaaacat aactgattca acagttgccg      1800
     tcgaaggtta cagtatatta agaaatgacc gtatgactgg tcgaggtggc gggatctgta      1860
     tttattataa atctggtctt aactgcagag ttcttgataa ctcagatatg ctgtctggtc      1920
     atgctagtgt tgatcgtact gaacatttat ttattgaggt acgagtcagt gaggataaac      1980
     ttctgcttgg tgtaatttat tctcctccgg atgttgactg ctcttatcta attgatcaga      2040
     aactctccga actatcgctt gattatgaga aaattgttct aataggtgat ttcaacacaa      2100
     acttaaggaa aaattgtccc aaaacaactc gtttctgtga agtactagat aactttggaa      2160
     tgttttgcgt taatacagaa cctactcact tttatcctgg gggcagctca ttaattgatt      2220
     tgcttataac aaatgacata aattttgttc tcaattttaa tcaagtgtca gccccaactt      2280
     tctctcatca tgatataatt ttctcatctc tcaatgtatt gcgttacaga aatgataacc      2340
     ctagaatgat cagagactat agtcgaatag attatccctc gttacaacac tatttaaacg      2400
     gcatagattg gtccttgctg tatagtatta cagattctga tacggctctt gatttcttca      2460
     acagtgttat aattcagctt tttgacaatt tagttccatt gcgggctcct cgtcataaaa      2520
     ataatgcacc atggttcaat aacgatattt taaatgctat gatcgctaga gatgttgctt      2580
     accgtgaatg gattcgtagc aaaaatttac tagaccatca tcagtttaaa agactacgca      2640
     ataaagtaac ccaactaatt aatacagcaa agtcgaacta catgtcttcg aacttggaat      2700
     ccgcgatttc aagtaaagaa ctctgggtga aactcaagcg cctcaatgtc actggaagtt      2760
     ctaacagtag cgctaaattt catcattcca aagatgaaat aaatactttt ttcggtgaaa      2820
     acttcacacg tgattctaca catccttcaa tacctccttc caattctagt ggctttactt      2880
     tcacaccttg cagtgaattg gaggttgcga attctatatt ctcaatttct tccgatgcaa      2940
     ttggtttaga tgggatcccg ttaaaattca taaagattat tttacctttc atcatcactc      3000
     ctttaacgta tctttttaat ttatttattt caagtaccaa gtttcctcgc gcttggaagg      3060
     ctgcaaaagt aattccgata cgcaagaagc ctgccggatc tgatctgaat aatcttcgcc      3120
     caataagtat tttgtgttcg ctgtccaaag tttttgagaa aatcgttaag actcaaattc      3180
     aagaatatat tcaacggttc agtctgctca gtccttacca gtctgggttc aggtctgggc      3240
     acagtaccac atcagcgctc ctaaaggttc atgatgatat tcatcaatgt attgacaaaa      3300
     aaggtgttgc ttttctgctt ttaatagact tctctaaagc ctttgataga gtctcacatg      3360
     ctaaactcct gcataaatta tcacatcaat tcaactttag tcgcgatgct gctttactga      3420
     taaaatcata tttatgtcaa cgcactcaag tagtagaact agatggaagt ctgtctaaca      3480
     caatttttat tttgtcaggt gttcctcaag gatccgtttt gggtcctctg ttgttttcgt      3540
     tgtttataaa cgatttacca tcaattctga agaactgctc aattcacatg tttgcagacg      3600
     atgtgcagct ttacatttgt tccactgatt ataacacata tgatttagca caactcatta      3660
     actatgatct ggagagactt tctaaatggt cttcaagtaa tttacttcct ataaactcaa      3720
     caaaaactaa agctatgttc atctctcgtc gacaaattcg tgcaacttta cctgatttag      3780
     tcattaacgg tgacaaaata gattatgttg ataaagcttg caatcttggc gtgatttttc      3840
     agtctaatct tgagtgggat tgtcaaataa atgcacaatg tgggaaaatc tatgcaggct      3900
     tacgacactt acgactcact gcaaatatgc tacctgtttc aaccaaatta atgttattca      3960
     aatcactttt gttaccgcat ttttcatatg gttcagaatt agttttgaat gcatcagcag      4020
     cagactttgg tcgactgaga gtttcactaa accattgcgt tagatgggta ttcaatttat      4080
     ctagatactc taatgtaact gaatttcaac ggcaattgtt gggttgttcg ttttatagat      4140
     tcttcagatt acgatgctat atcaccttat ttaaaattat taatcatggt ccacaatact      4200
     tagttgacaa gttacagtct ttcagaagtg ctagagttcg aaactatata cttatacatc      4260
     ataactcctc tcattatagc aatacttttt tcgtacgtgc aattaatctt tggaatcagc      4320
     ttccaacaga tattaaatct atttcttcac tatcaagatt ccgagctgag tgcatgagct      4380
     ggctaaatga agggaattag tttaagttag atgaattgtt taacggggat atcatgtttt      4440
     tgattgttgt cttttgtaat taaatcatat tacgatatag atttgtatga attggataga      4500
     atgtggtgtg agcaacgaaa aatccgattg tagaattttt ataagggtga tcccttactc      4560
     tacaagtata attgaataaa taaataaata aataaat                               4597
//
ID   Kiri-18_DTa repbase;    DNA;    INV; 4538 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   13-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-18_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4538
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5914-5914 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 4538 BP; 1525 A; 876 C; 812 G; 1291 T; 34 other;
     gtcgtgtttt tctgccgctc cgcaaaaatc gmmaatttct tggakatatc cgcaatatcg        60
     tcgaacaaaa tacwaatcaa aacaaacgta aagcaactam aaactaaaat tggcgtttwc       120
     gttttggtwa agcacattaa aagcactaaa agcaaaagtt aaaatttagt agcaatcaca       180
     cacaamtaaa cgaamataga agcctgctaa agaaaaacwc aaaaacgaaa gaataacagg       240
     aaacactcaa acagctgwac acactcaaaa aaamcagaag aaatacactg ctacaaaatg       300
     tcgtcgactt ccactgcacc gccgacgaag ggcaccmgga acaacgctgg aacagctagc       360
     gaccgagttt ctgacgtcca ctcaccacaa ctgttggagc tgcttaaggt ccgcttccaa       420
     gagcagaccg accaaatcgc gaaccacgtc cgggatgcag agcagcgcat cctcagcagc       480
     ctcatggatc gcctggagct gatctctggt gaggttaaac agatgtttgc tcgagtcact       540
     aatttggaac gcgacgtggt cgatcttcga actcagagag atcggttgag tagcgggttg       600
     agcggctgga ccgggaggta gcgggctggc gagaactggg aggtctagag gcaaaacagg       660
     cagcccaaaa cwtggcaaac agtgcgtgtg aactgcgaat ccacggkgtt ccctttgwgg       720
     agggsgaaaa tgcacgagct ctctacaacc agctatgcta taacctgcaa ctggctcctc       780
     caccaagggt acgagaaatt ttccgagccc aaaaawcaca acaaasgcat gtcgatcccg       840
     tgatcattat gaaatttgaa aacgttcatg agaaaatcac ccttctacgc gaaatcgggg       900
     tcgcgagcat aaaaaacmac taagcttgma tttattgggt ttcaactctg acgctgtaat       960
     ttatgttaag agmaactttc gagagagawc taccgaattt ccaaagkagc matgcggatg      1020
     aaaaaacaaa aagttctctc agcagtsttt actcggcgcg gcsttgtaca cgtccgctgc      1080
     aatgaaggag agggcgwtca ctgcatcgak cgcatcgagg agcttttgtc tcttacaccc      1140
     caaaaaaagt cttcagatct ccccctctct tcaaccgcct ctcccamtgc ctctwcagct      1200
     ggacctgatg gcgctgcagg tgtttcaaat agttttcgct cttaaattag caaacacagc      1260
     actcttaatt aagataggtt tagtattagt ttcttatctg aaaatctact tttattttaa      1320
     tgtcattcct ttaaatattg agtttgcgcc tccaataact tttatttttc aatgcaggat      1380
     gagacaggta gttccataac tggtgccctg ataaaaacta ttagtaatta ccgaaagggt      1440
     cttaaagtcg ttcacctaaa tgcacaaagc ttacttaata aaatagatga gttcagattc      1500
     attttttccc agtcaaatgt agatgtgata tgtgtgtccg agacgtggtt tttgcctgat      1560
     ttatgtgatt tgtcaattgt ttgtgatggt tatgttgttt atcgttgtgt gacgggccgt      1620
     gtcgcttata tgtcaattcg aaattaaaat gtagtgttaa atgtaaacaa ccaagtgaat      1680
     gtccgattga atacattttt ttagaaatta caaatagagt atatgggaaa cttcttctcg      1740
     gctgcatata cagacccaac cgtaccatcg actatgagcc aatactcagc gttatcgcag      1800
     atatttcgct gttgtactcg gacgtcatac tggcaggcga ttttaatagc aatctgctga      1860
     aagagagcca tcttttgaat ggttttgaat cccttgggct gtatagcgct gatgaaacat      1920
     kgcctacaca tttctcmaat acctgtaata cacttcttga cttawttctt gttaatgacc      1980
     gtactaaaat tttactttat gaccaggttt ctctaccagc cttttccaga catgatttaa      2040
     tactcttgac ctatgacttg accttcgact atcaaacgac ttctttcaat tacagagact      2100
     ataagaacat taacctaaca ggacttcagc ttgaatttac aacttgtgac tggtcatcca      2160
     tttaccaaac ttccaatgtt gattgtcaat tgcatgtttt aaatagtaat gtccagtacc      2220
     tgtttagcaa atgtgtgccg ttgagaacta aagtgattaa gccgatgcaa aatccttggt      2280
     tcaataacga aattaaaaat ctaatctatc agcgagatgt tgcctaccgc aaatggaagc      2340
     gctacaaaac tgaggacttt agaaacaatt acaatgaggc tcgagcaatt gttaataaaa      2400
     agattcattc tgctaaatgc agattttata aatccaaatt tgaaaattgc tcttctgcta      2460
     agctctgctg ggccgaaatt aacaagttag gaataggaaa atgcacacag aagactgaac      2520
     caaacgctga tgtcgaaaaa cttaaccaaa aattttctga aattgatgac ctgaagcgac      2580
     atgcaatacg tacctgaata ctgtacctat ctgtgataat agttttagtt tcatgtgtgt      2640
     caattcgagt gatgtccttg ctagtattct taaggtaaaa tccaatgctg aaggcctcga      2700
     taacataagc cctaaattta ttaaattgtt actacccatg ctgttgtccc acgtcaccca      2760
     tatttttaat actgtaataa ctaagtgttc gttccctaca gtatggaaaa aagcaaagat      2820
     tcttccaatt ccgaaaccaa ataacgactt cagacccata tcaatacttc ccttcctgtc      2880
     aaaagttctt gaaaacctta tgtcctccca aatacaaact tttttgcacg acaattcact      2940
     gttacacgac aaacagtctg gtttccgaag gaaaagaagt tgtattagtg ccattactga      3000
     tattgtggaa gatgtcaggc agcagcttga caaaaattgt gttacatttt tgactcttct      3060
     tgatcacagc aaagcctttg attcggtgaa tcacaacata ctgtgtgcaa aactccaaaa      3120
     tatttttaac ttttcgagca cagcggtcaa gcttgttcaa tcctacctaa cagatcgagt      3180
     acaagctgta gtctccggga tcaatatcac cacctttagg caacttacaa ggggagtacc      3240
     tcaaggatct gtgttaggac cattgttgtt ttctatttat gtgaatgatt taccgagtgt      3300
     cttgtctgaa tgtgaagtac acctatacgc tgatgatgtc caaatttatg ttagtaaccc      3360
     tgtcaaggat ataaatgtgt gtgccagtgt aagtaacaaa atgttatcca taattgagaa      3420
     gtgggctaac aataacggct tgggaataaa tccaaaaaaa tcaaagtgta tcgtaatcag      3480
     taaaagggtg atcgacacaa gtgttctccc aaaattatat ataaataata cagctattag      3540
     ctatgaagat catgttgtaa atcttggcat aacctttaga aaaaccttat catggagcat      3600
     gcatatagct aaagcaactg gtcgcacata cggtttgttg cgtcagcttt cagcatcaaa      3660
     atcatttgta ccagaacaaa taagattatt aatctctaaa gccattcttg ttcccactct      3720
     cttctatggc atagaaattt ttggtcactg tgatgtgcgt gatacgcgca cactagtagt      3780
     tgccttcaac gcaattgtcc gttatgtgtt taatttaaga cgatatgact atgtatcaca      3840
     tttaacttat aaaattcttg accttaactt gaccgactgg atagatttta gaactttggt      3900
     atactttcac aggattgtga cgactcgaga accgatatac ctatatcgga agctatttcc      3960
     tgctacatcc caaagaacaa ataattacct atgccctcgt actttaacgc tttgttcgaa      4020
     gaggcagttt tttattaaca gcatccgttt atggaacaat cttccccatc aattcaaaac      4080
     tattaggagc gcaactcaat tctcaattaa aattaaagaa tttataaaat cacaataaaa      4140
     gtagaaaaaa gtaatattag gtaaaaaatc ataaaaacgt aaaaaaaaaa aaaaaacaaa      4200
     taaaataatc aaaataaaaa taaaaagtat atagtatata agaattaaat gttaatagtt      4260
     cacaataaaa gtagaaataa gtaatattag gtaaaaaatc ataaaaacgt aaaaaaaaac      4320
     aaataaaata atcaaaataa aaataaaaag tatatagtat ataagaatta aatgttaata      4380
     gttcgctaat ttaatgattt tgaaaattgt tagcttttaa gtattatata aaaatgttat      4440
     aagcaatttt gtcaaagtga ctagcgcaat aataataagc ttacgcttgc agcgctagga      4500
     tattatatca ataaaaatta aaattaaaaa aaaataaa                              4538
//
ID   Kiri-19_AAe repbase;    DNA;    INV; 2963 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-19_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2963
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 714-714 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..239
FT                 /product="Kiri-19_AAe_1p"
FT                 /translation="INLCHLNAQSLCARQLGKLDEFKSCFVNSKLDIICVT
FT                 ETWLQDSISDSTVGVEGYTILRNDRNYSRGGGVCIYYKNCIN"
FT   CDS           243..2750
FT                 /product="Kiri-19_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="KQVAASEIVSDSRDFNRTEYLFVEFFVVQIKFLLGVV
FT                 YCPPGVDCSWVLEQKLSELSLNYENIILLGDFNTNLMKNCQRTNRFNDVLT
FT                 NFGLFCVNNEPTHFYNGGSSLIDLLLTNDSNFVLNFNQVAAPGFSQHDIIF
FT                 SSLNITRTPSDRTRMFRDYNRIDYTRLRQSLECIDWSLLYSITEADTALDF
FT                 FNSIIIELYENFVPLRISRPKSNAPWFTNDILNAMVVRDVAYRQWVCSKSD
FT                 ADRNQYKRLRNRVTCLINKAKSDYLSINIESSSSNKETWRRLKKLNVTASN
FT                 NEVEFCNTSDEINSYFSGNFTRESDYHSVSPINVDGFKFTSCSELEVTSAI
FT                 FSISSNAVGLDGVSLRFIKMVLPYVITPITYLFNLFISTSKFPRAWKAAKV
FT                 LPIRKKPKSNRLDNLRPISILSSLSKAFEKILKIQIQGFVQRFELLSPYQS
FT                 GFRAGRSTTTALLKVHDDIHQTIDKKGVAFLLLIDFSKAFDRVPHVKLLNK
FT                 LSTQFYFHRNAVTLIKSYLNLRTQVVDANGELSNPITILSGVPQGSVLGPL
FT                 LFSLFINDLPSVLKFCLIHMFADDVQLYFCTANTNLESVAVLINSDLKRVQ
FT                 EWSEKNLLPINPSKTKVMFISRQQARSPLPNLLINDEIIQYAEKASNLGVI
FT                 FQNNLEWNVQVNSQCGKIYAGLRHLKLTASMVPVSTKLRLFKSLLLPHFSY
FT                 GLELILNSSASDYDRLRVALNHCVRWIFNLNRYSRVTHLQRQLLGCSFYNF
FT                 FKLRCYTTLFKIINHGPKYLADKLQPFRSIRVRHFVLLQHNSSHYGNTFFV
FT                 RAIILWNQLPNEIKVTRSATSFRRECLSWLNGGN"
XX
SQ   Sequence 2963 BP; 923 A; 521 C; 538 G; 981 T; 0 other;
     ttattaattt gtgtcacttg aatgctcaaa gtttgtgcgc ccgtcagcta ggtaagcttg        60
     atgaattcaa atcctgtttt gttaatagta aactggatat catttgcgta actgaaacat       120
     ggctgcaaga ttctatttcc gatagtaccg ttggcgtcga gggttacaca attctaagga       180
     acgatcgaaa ttatagtcga ggtggaggag tttgtattta ttataaaaac tgtattaatt       240
     gaaaacaagt tgctgcttcc gagatagtaa gtgattcaag agattttaat cgtactgaat       300
     accttttcgt tgaatttttc gttgttcaaa ttaaatttct tttgggggtt gtttactgtc       360
     ctccaggagt tgattgttca tgggtgctgg agcaaaagct ttcagaatta tctttaaatt       420
     atgaaaacat aatcttatta ggtgatttca acacgaactt aatgaagaac tgtcagagaa       480
     caaatcgttt taatgatgtg ttaactaact tcggactttt ttgcgttaac aacgaaccca       540
     ctcactttta taatggtggg agctccttga ttgatttgct gttaacgaac gattccaatt       600
     ttgtactaaa cttcaatcag gtagcagctc ctgggttttc ccaacatgac ataattttct       660
     catcgcttaa cattactcgt acgccatccg atcgaacaag gatgtttaga gattacaacc       720
     gaattgatta tactcgtcta agacaaagct tggaatgtat cgattggtcg ttactctata       780
     gtattactga ggccgataca gctctcgatt tcttcaatag tataataatt gaactttacg       840
     aaaattttgt tccactgcgc atatctagac caaaatcaaa tgcaccttgg ttcaccaacg       900
     atattctaaa tgctatggta gtaagggatg tagcatatcg tcaatgggtc tgcagtaaga       960
     gtgatgctga tcgcaatcag tacaaaaggc ttcgaaatag ggtcacttgc ttgattaata      1020
     aggctaaatc tgattatctt tcaataaaca tagaatcatc atcttctaac aaggaaacat      1080
     ggcgaagatt gaagaagcta aatgttactg cttcaaataa cgaggtggaa ttttgtaata      1140
     ctagtgatga aatcaattct tactttagtg gtaattttac acgtgaatca gattaccatt      1200
     ctgtatcccc aataaacgtc gatggattca agttcacctc atgtagtgag ttagaagtta      1260
     cgtcggcaat cttttctatt tcatcgaatg cagttggatt agatggtgtg tctttgagat      1320
     tcataaaaat ggttttacct tatgtcatta cccctatcac gtatcttttc aacttgttta      1380
     tttctacatc aaagtttcct cgagcatgga aagctgcaaa ggtcttgcca attcgtaaaa      1440
     aaccaaagag taacaggttg gacaatcttc gtccaataag cattctgagc tcgctttcta      1500
     aggcttttga aaagatttta aaaattcaaa tacaaggctt tgttcaacga tttgaacttc      1560
     ttagtccgta ccaatccgga tttagagcag ggcgaagcac aactaccgca ctactcaagg      1620
     ttcatgatga tattcatcaa accattgata agaaaggtgt agctttttta cttcttattg      1680
     atttttcaaa agcttttgat cgagtaccac atgttaagct tttgaataag ctgtcgactc      1740
     aattttactt tcatcgtaat gctgtaacat taatcaaatc atatttgaat ctacgtacgc      1800
     aagtggtaga tgctaacggt gaactctcta atccaatcac tattctttca ggtgtacctc      1860
     aggggtccgt cttgggtccc ttgcttttct ctttatttat taacgatctg ccatccgttc      1920
     tgaagttctg tctaatacac atgtttgcag atgatgtgca actttatttc tgcacggcta      1980
     ataccaattt agaaagcgta gcagtactga taaattctga tcttaagcgg gttcaagaat      2040
     ggtctgagaa aaatcttctt ccgataaatc catctaagac gaaagtcatg tttatttcta      2100
     ggcaacaggc tcgttcacct ttacctaatt tgttgatcaa cgatgaaatc atacaatatg      2160
     ccgaaaaagc ttctaaccta ggagtgatat tccaaaataa tcttgaatgg aatgtccaag      2220
     tgaactcaca atgcgggaaa atttacgcag gtcttcgtca cttaaaactt acagcttcta      2280
     tggttcccgt ttctactaaa ctacgattgt tcaaatcgct tttgttgcct catttttcgt      2340
     atggtttaga attgatttta aattcatcgg cttcagatta tgaccgttta agagttgctt      2400
     tgaaccactg tgtacgctgg atatttaatc ttaacagata ttctagagta acgcacttac      2460
     aacgacaact tctggggtgt tccttttaca atttcttcaa attacgttgc tacacaacat      2520
     tgtttaagat aataaatcat gggccaaaat atcttgctga taagctgcaa cctttcagaa      2580
     gcatccgagt acgacacttt gtgttattgc agcataactc gtcgcactac ggtaatactt      2640
     tctttgtacg tgcaattata ctatggaatc aacttcctaa tgaaattaaa gttacgcgtt      2700
     cagcaacaag tttccgtcgt gaatgtttaa gctggcttaa tgggggaaat tagagtgaac      2760
     gatgcagcaa gtcaacgaaa aagagaaaag ttaatgtttg tattgtttga atttattgaa      2820
     tttgtaaaga atggaagtgg taaatttgga gaacaaaaat aataccgatt gtagtaaatt      2880
     tataagggaa atacccttac gctgcaagta ttttcattaa taaataaaat aaaataaata      2940
     aataaataaa atcaaaaata aaa                                              2963
//
ID   Kiri-1_AAe  repbase;    DNA;    INV; 4510 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   06-JAN-2011 (Rel. 16.02, Last updated, Version 3)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2_Ele1;
KW   Kiri-1_AAe.
XX
NM   Kiritsubo-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4510
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4510
RA   Kojima K.K. and Jurka J.;
RT   "A distinct group of non-LTR retrotransposons from the yellow
RT   fever mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele1.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 8 sequences with >97% identity, and ~99% identical
CC   to the original sequence in [1]. This family does not belong to
CC   the L2 clade and is renamed as Kiri. It could constitute a new
CC   clade with other Kiri elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..984
FT                 /product="Kiri-1_AAe_1p"
FT                 /translation="MHQNKHITRSVSTSSVNDGNITKRPRDETXSPAGVED
FT                 ENRDLXNKIQXMFETSNSKIEAKIDASISRLEQRISGVEKQFATFQSECTD
FT                 NINKLATAVTEVRVGLKTTTQRIDMLEKSNDLLISGLPYVVNENLHQLFRN
FT                 IAASLAYADSDLPLVDLKRLMRPPITAGSSPPIVCQFAFRNAREEFYKRYL
FT                 KTRNMTLRTVGFDSDQRVYVNESLTLQARAIRTEAIKMKKNGILLKVFTRS
FT                 GIVYVQRXEGSAAEPINDISHLRAGFSSNLSX"
FT   CDS           1528..4353
FT                 /product="Kiri-1_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDEFPLNNASPNTIIPRIVLNAALQPEFLNICHMNVQ
FT                 SLTARNFSKFHELKLNFTDSKVDVICFTETWLNSTINNSMLSINGYKLIRN
FT                 DRNRHGGGICIYLRNNLSYKVVSMSNNSADDFCGTEYLNIEVKVGEDKILL
FT                 GVVYNPPNIDCTDTLYDVLENCTIKYKGSYIIGDFNTDLLKHFSRSRKFIE
FT                 MLXTLSFACTNSEPTFYHRSGCSLLDLFITDAPDTVVKQDQLSMPGVSHHD
FT                 LIFCSLRYSPNRQKDYVSYRDYANFDSVALFDGFHSINWNLFFNMDNPDEL
FT                 LEYLNYHLLKLHDQYIPLRRKKDNKTPWFNNDISHAIINRNLAYNKWKRTK
FT                 EQIDRNSYKRLRNKANELIIQAKAKYDKQKLKVDLPSKQLWNNIKELGLSK
FT                 DSRFLEQNDLTADEINNYFISNFTNDDSTPFRNLSTDGFKFLEFLEHDIIN
FT                 CIFSVKSNAVGLDNIPIRFIKILLPLALPIYKYLFDSIIKTSIFPRAWKNS
FT                 KIIPIKKKGNCSAXSNLRPISILCALSKVFEKLIKCQINKFISDNDFLHPH
FT                 QSGFRSNHNTNSALIKVHDDISHVIDKKGLAILLLIDFAKAFDRVSHSKLV
FT                 KKLSTKFSFSQTAAELIQSYLSGRQQAVFHNGLLSTFSEIKSGVPQGSVLG
FT                 PLLFSLFINDLPAVLEYCSIHMFADDVQIYICISGEVDMNEIARKINHDLV
FT                 NISHWSRNNLLEINPSKTKAMLISKRKNPPNPPIISMDGQIIQFFDRLNNL
FT                 GVIFTTNLSWAAFINGQCGKIYGTLKRLNMISRHLDTSMKIKLFKSLILPH
FT                 FTYGEFVYSHASALSLNKLRVALNACIRYVFNLNRFSHVTHLRDVLLGCQF
FT                 SQFYTLRTCVQIYKIIKTNSPRYLYSKLQFLRNTRTLSLVIPHHSSAYYGQ
FT                 SLFVRGIHNWNCLSPLLKSSSSILVFRKGLLSEIERMR"
XX
SQ   Sequence 4510 BP; 1408 A; 904 C; 777 G; 1410 T; 11 other;
     tcatttttgt acctcattgg tggccaaaat aactttcgat aaagtttttg tgaagtgact        60
     agccgatatc ttcatctgac atcaattccc ttcagaagtt tcagtctttt tcgagcaact       120
     acgcacgtat acattgtagc tcatttktga tcgccaacaa aagaaatgca tcaaaacaaa       180
     cacatcacac gttccgtgtc aacatcatcg gtaaatgatg ggaatattac taagcgaccc       240
     agagacgaaa ctkttagtcc cgcaggagta gaagatgaaa atcgcgactt gmtaaataaa       300
     atccagcawa tgttcgagac ctcaaactct aaaattgagg ccaagatcga tgccagtata       360
     tcgaggctgg agcagagaat ctctggtgtg gaaaaacaat ttgcgacatt ccaatcagag       420
     tgcaccgata acatcaacaa actagctact gcagtcactg aggttcgggt tggacttaaa       480
     actacgacgc aacgtattga catgttagaa aaatccaacg atctactcat ttctggactg       540
     ccttatgttg tcaacgaaaa cctacatcaa ttattccgaa acattgctgc tagcctagca       600
     tacgcagatt cagatttgcc cctagtggac ctcaagagac tgatgcgccc tcccatcaca       660
     gctggatcct ctccaccgat tgtctgccag ttcgccttca gaaatgccag agaagaattc       720
     tacaagcggt acctcaaaac aagaaacatg acccttcgca ccgttggatt cgacagcgac       780
     cagagagttt acgtcaacga gagcctaaca ctgcaagcca gagccatacg aacggaagca       840
     atcaaaatga aaaagaatgg aattctgctt aaggttttca cgcgtagtgg gatagtctat       900
     gttcagcgta gwgaaggatc tgcagctgag ccgatcaacg acatcagtca tcttagagct       960
     ggattctcat caaacctttc cwwatagttt ctcttctcct tcctgaactc ttccatgcag      1020
     ccttccttaa actagttccg tgcttccatc cgmtcctgaa agttaacttt aaaccgttga      1080
     tcaaatgaac ctwtccaaaa ttcgctctct ctcctgccta agctcatccg tgcttccctc      1140
     cttaatttat cccatgactc catccactcc tgaaagtcag ctgttgaaaa accacggacc      1200
     ccggattttg ctgttgctgt tgctgttgtt ggagctacct tgttgctgtg gctgttgctg      1260
     ttattgttaa ttactgctat tatcattcgc aatacttgtt acgctgatgg tggttgagat      1320
     agttatagtt ttggctttgt taaaatcgaa atttgagttt tctttttctt ctcatctaca      1380
     ttatcaactg aacttagacc attgatgtat ttgtaatgta caagttagtg tttaaagatt      1440
     tcttttcgtt tgaccttgac attgcatacc gcttcggttt catgagtgat ctttttctga      1500
     ggcaaatctt aatcaactgc tttgataatg gatgaatttc cgcttaataa tgcgtctcca      1560
     aacactatta ttcctcgaat cgtacttaat gctgctttgc aacctgaatt tctaaacatc      1620
     tgtcacatga acgtccaaag cttaaccgct cgaaattttt caaaattcca tgaactgaag      1680
     ttaaacttta ctgacagcaa ggtcgatgta atttgtttta cggaaacatg gctgaatagc      1740
     accattaata actcaatgct aagtatcaat ggctataagc tcatacgcaa cgatagaaat      1800
     aggcatggtg ggggtatttg tatctatctg agaaataatt tatcgtacaa ggtcgtgtca      1860
     atgtcaaata attccgctga tgatttctgt ggcaccgagt atttgaatat tgaggttaaa      1920
     gttggagaag acaaaatatt gctgggcgtc gtttataatc ctcccaatat tgattgcact      1980
     gatactttgt acgatgtttt agaaaattgt acgattaagt acaaaggatc ttacattatt      2040
     ggggatttca atacagattt actaaaacat tttagtcgat cacgtaagtt cattgaaatg      2100
     ttagawacct tgtcgtttgc atgtactaat tctgagccaa cattttacca tcgatcagga      2160
     tgctccctac tagatctttt cataactgat gcaccagata ctgtcgtgaa acaggatcag      2220
     ctctctatgc ccggtgtttc tcaccacgac ttgatttttt gttcacttcg gtactcacca      2280
     aacaggcaaa aagactatgt tagctaccgt gactatgcta attttgactc tgttgcgtta      2340
     tttgatggtt tccatagtat taactggaat ttgtttttca acatggataa ccctgatgaa      2400
     ttgctcgagt atttgaatta tcacttgctc aaacttcatg accagtatat acccctgcgg      2460
     cgtaagaaag ataataaaac cccatggttc aataatgata tttctcatgc gattattaat      2520
     agaaacctag catacaataa atggaaaagg accaaagaac aaattgaccg aaattcttac      2580
     aaaagactta gaaataaagc taatgaactg attatacagg caaaagctaa atatgataaa      2640
     caaaagttga aagttgacct accgagtaaa caactatgga ataatataaa agaattagga      2700
     ttatctaaag attcccggtt tcttgaacag aacgatttga ctgcggatga aattaataat      2760
     tacttcatat caaatttcac taacgatgat tctactcctt ttcgaaatct ctctactgat      2820
     ggttttaaat ttctagaatt tcttgaacac gatattatta actgtatttt ttcagtcaag      2880
     tccaatgcag ttggattaga taatattcct atacggttta ttaagatttt attacctctg      2940
     gctctgccaa tttataagta cttatttgac tccataatta aaacttctat ttttcctcgg      3000
     gcttggaaaa actcaaaaat aattccaatc aaaaagaaag gaaactgttc agcaakctca      3060
     aatttgcgcc cgatcagcat tctttgtgcc ttgtcaaaag tgttcgaaaa gttgattaaa      3120
     tgtcaaatta acaaatttat ttccgacaac gatttcttgc atccacatca atctggattc      3180
     cgtagtaatc ataacacgaa ctctgcgtta atcaaggtac atgacgatat ttcccacgta      3240
     attgataaga aaggattagc catcttgctc ctcatcgact tcgcaaaagc gtttgatcgt      3300
     gtttcacact caaaactagt gaaaaaatta tctactaagt ttagtttttc ccaaaccgca      3360
     gcagaactga ttcagtccta tttgagtgga aggcagcaag ctgttttcca taatggactc      3420
     ctttctacat ttagtgaaat aaaatctgga gtaccgcagg ggtctgtact tgggccttta      3480
     ttattttcac tgttcataaa tgacttgcct gctgttcttg aatattgctc catacacatg      3540
     ttcgcggatg atgtgcaaat ttatatatgt atttccggtg aagttgatat gaacgaaatc      3600
     gccaggaaaa taaatcacga tctggtgaat atttcacatt ggtcacgtaa taacttactt      3660
     gagataaatc catctaaaac taaggctatg cttataagca agcgtaaaaa tcctcccaac      3720
     cctccaatca tctctatgga cggacagata atacagtttt tcgatcgact aaataatctt      3780
     ggtgtgatat ttaccacaaa cttatcatgg gctgctttta ttaatggtca atgtggtaaa      3840
     atctatggaa cacttaaaag actcaacatg attagcagac accttgacac atctatgaaa      3900
     attaagctat ttaagtcgct aatactacct cattttactt acggggagtt cgtgtatagt      3960
     catgcttcag ctttgtcatt aaataagtta cgagttgccc taaatgcgtg tatcagatac      4020
     gtttttaacc ttaataggtt ctcacatgtt acccatttac gagatgttct tcttgggtgc      4080
     cagtttagcc agttttacac tctcagaact tgcgtacaaa tatataaaat tattaaaact      4140
     aattcacctc gctatctata cagtaaactt cagttcttga gaaacacaag gacattaagt      4200
     ctagtcatac ctcaccattc ttcggcatat tatggccaat ctttgtttgt gagaggcatt      4260
     cataattgga attgtttatc tccattactc aaatcttcgt cctcaatctt agtcttcaga      4320
     aagggtctac tcagtgagat cgaacgaatg cggtgaaaag gtcaaatagt caaattcagg      4380
     aacttaaatt agatgtagag ttaaaattgt tcattaataa actaaataca ccacagtgtg      4440
     acattttaaa aaggattatc cttacgttac atggattgaa ataaaaataa ataaataaat      4500
     aaataaataa                                                             4510
//
ID   Kiri-1_CQ   repbase;    DNA;    INV; 4655 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4655
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 120-120 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >99%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           301..1125
FT                 /product="Kiri-1_CQ_1p"
FT                 /translation="MSTKRTPPINPATPSGSSNNSNQNKRYRSSSAGSVSP
FT                 GASPGPLTLEAVMKEINMQFTKTFDRIDTISNKIDTVKAELNEQLSSVSRD
FT                 FNSFKAECADKFKFTDDAMCELESRIDGISQEIGGIENRNELIVSGVPHIP
FT                 GENVAAYFKDMWKQVGLPENPAPLVDVRRLKTGTQGDGLILLQFALRNNRD
FT                 DFYSCYLRKRDLKLQHLGMNSTRRFYVNENLAVPARKIKKAALELKKSGKL
FT                 SSVYSKKGIVHVKRTADQQPGTAVHSENQLQQYS"
FT   CDS           1299..4148
FT                 /product="Kiri-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPPLTNHTSANIPGVVMNCALHSGKLNICHGNTQSLC
FT                 ARKFAKLDEVKDLLHNSKVTVACFTESWLTGQISDRSIAIPGFAVCRNDRM
FT                 YQRGGGIVIYYRSHLSCRKVFCTQLSAESGNKTESLVVELRFGGETVLLVA
FT                 VYNPPGNNCSDFLEEKLVEYASTYNNVLLIGDFNTDMSKPSNLQSQFQSVL
FT                 DTFALVSVGEEPTFFHNRGSSQLDLFITSCSDRVLRFNQVGCPALSQHDLI
FT                 FASLDFDANPVPRVNTYRDYVNFDSTSLVDAVSSVPWHNFYEVNDPNELAD
FT                 FFNSRMKQIHDVCIPLRVIRCRNESNPWFSYEIRKSMLERDLAYSDWRRAP
FT                 AESKLVARQRYNSLRNRTNTMIANAKVQYFNRFLDSRVPSNVLWKRLKSVG
FT                 VGKEKSSSVCEFDPDEVNRAFLSSFIQNEQGSGLRSSAADSPYSLTFQPVE
FT                 GWQIVNAVCDVKTNATGLDGLPIKFIKIVLPLVLQQITHLFNSIIATSIFP
FT                 TCWKHAKIIPLRKKPHLSALTNLRPISILCALSKVFEKLLEQQMSSFITEN
FT                 NLLTEHQAGFRKGQSIQTATSRVFDDLARTTDRRGSAVLLLLDFSKAFDTI
FT                 PHNKLCTKLETQFNFGPSAVNLIRSYLENRRQTVFCGDLQSVSSIVDSGVP
FT                 QGSIVGPLLFCCHVNDLPPVLRYCSIQLYADDVQLYIGRLGPCSRELIRMV
FT                 NEDLDRIAVWSQRNQLFVNQAKSKALFVQGRRRNKAQLDLLPRITMSGQAI
FT                 EWVDSAKNLGFIFQADLQWDGLIQQQCGKIYGSLRTLRSCTSAAPVSTRLK
FT                 LFKSLILPHFLFGELLHVNPSAGALDRLRVALNCCVRYVYGLTRYDHVSHL
FT                 QRNLVGCPLDNLYAHRSCLFLRKLLTTRSPPELYQKLQQFRGRRLLNLIIP
FT                 ANRTLTYSSSLFVRGVVNWNMVPTELKHGVSQATFKRNCLEFWNRE"
XX
SQ   Sequence 4655 BP; 1246 A; 1216 C; 1086 G; 1106 T; 1 other;
     aaagtttggc aacacttacg tcaatatgtg ttgcgagtaa aagctgcgta aacaaattac        60
     gatcgtggag tgaaaccgcc ccgttcagca gtgaaaaccc tctgagtgaa atccggaacg       120
     ttcgccgtac ctctgttggt gttatccagc tctgccgtgc cgcacttgat ccgcaccagc       180
     caccggaatt tttggtttgt tttgatcgga cctgacatcg tcaacaagcc ggcgcgtttt       240
     gttctaaaaa cgataagttt cgttcacacc aacaccacaa cgcagtgcaa gagtatcagc       300
     atgtcaacaa agcgtacacc accaattaac cctgccacgc ctagcggcag cagcaacaac       360
     tcaaatcaaa acaaacggta tcgcagcagt agtgctggtt cggtttcccc gggagcatcc       420
     cccgggccgc tgacgctgga ggcagttatg aaggagatca acatgcagtt caccaagact       480
     ttcgatagga tcgacaccat cagcaacaaa atcgacactg tgaaagcaga acttaacgag       540
     cagctcagtt ctgtttcgcg tgacttcaac tcgttcaagg cggagtgtgc tgataagttc       600
     aagttcaccg acgatgcaat gtgtgaactg gaatccagaa tcgatggcat ctcccaggaa       660
     atcggcggaa ttgagaatcg gaacgagctc atcgtaagcg gtgtcccaca cattcccggg       720
     gaaaatgttg cggcgtattt caaggatatg tggaaacaag tcggtcttcc tgaaaatcca       780
     gcccccctgg tcgacgttag gcgactgaag actggaaccc agggtgacgg cctgatccta       840
     ctgcagttcg cgcttcgaaa caaccgggac gacttctaca gctgctatct tcggaaacgt       900
     gacctcaagc ttcaacatct aggcatgaac tcaactcgcc ggttttacgt caacgaaaat       960
     cttgccgtcc ctgccagaaa gatcaagaaa gctgcgttgg agctcaagaa gtctgggaaa      1020
     ctgtcgtcgg tctattcaaa gaagggaatc gtccacgtga aacgcacagc agatcaacaa      1080
     cccggaactg ctgtccactc ggaaaaccaa cttcaacaat actcttagtt aagtacattg      1140
     tgcctccgtc cacgtcttaa tttgtttaaa tgttttattt tgagaacttt tattgttttg      1200
     tgatagaaga ttgtattttt gattgtattc taaattgtgc ctcgtttaac aaatttttga      1260
     acggtagtag tagtatcagt taattgaatt gctccccgat gccaccctta accaaccaca      1320
     cctcggcgaa catcccggga gttgttatga actgtgctct tcactcgggc aagctcaata      1380
     tctgccatgg taacacacag agcctctgtg cgaggaaatt tgctaaacta gacgaggtga      1440
     aggatttgct gcacaattcc aaggtaaccg ttgcttgctt caccgagtct tggttgactg      1500
     gacagatctc agaccgtagc attgcaatcc ccgggtttgc cgtctgtcgc aacgatagaa      1560
     tgtatcaacg cggtggtgga atcgtcatct actacagaag tcacctcagc tgcagaaaag      1620
     tcttctgtac ccaactatcg gcggaatccg gcaacaaaac tgagagtctg gtggtagagc      1680
     tgcgttttgg cggtgagacg gtccttcttg tagcagttta caaccctcct ggtaataatt      1740
     gctctgattt tctcgaggaa aagttggtgg agtatgcctc aacctacaac aacgttctgc      1800
     tgattggaga cttcaatact gacatgagca aaccgagcaa cctgcaatcc cagtttcaat      1860
     ccgtccttga cacatttgcg ctcgtatctg tcggcgagga acctacattt ttccacaacc      1920
     gtggcagctc tcagcttgac ctgttcatca ccagctgtag tgacagagtg ttgcgtttca      1980
     accaagttgg ctgtcctgcc ctttcacagc acgatctcat ctttgcctcg cttgactttg      2040
     atgcaaatcc cgtccctcgc gtcaacacct atcgtgatta cgtgaatttc gattctacca      2100
     gcctggttga tgcggtttcg tccgttcctt ggcacaactt ctacgaggtc aacgacccaa      2160
     atgagctggc tgattttttc aactcccgga tgaagcaaat tcacgacgtt tgcattccac      2220
     ttcgtgttat cagatgccgc aatgagtcca acccctggtt cagctacgag atcagaaagt      2280
     cgatgttaga acgtgatctg gcgtatagtg attggcgaag agcacctgca gaatctaaat      2340
     tagtggctag gcagcggtat aactcactca ggaacaggac aaacacgatg atagcgaatg      2400
     caaaagtgca atatttcaac cgttttctgg acagccgtgt tccatccaac gtgttatgga      2460
     aacgcttgaa atctgttggc gtcggcaagg aaaagtcttc cagcgtgtgc gagttcgacc      2520
     ctgacgaggt taatcgtgct ttcttgtcga gttttatcca aaacgagcag ggcagcggac      2580
     tgagaagttc agcagcagat tctccgtaca gccttacttt ccaaccagtg gaaggctggc      2640
     agatcgtcaa cgctgtgtgt gatgtgaaaa ccaacgccac tggtctagat ggactgccga      2700
     tcaagtttat aaaaatcgtc ctccccctgg tcttgcagca aattactcac ctattcaaca      2760
     gcatcatcgc aacctcaatc tttcctacct gctggaaaca cgctaaaatc ataccactga      2820
     gaaagaaacc ccacctgagc gctttgacga atctacggcc cataagcatc ttgtgtgcgc      2880
     tctcgaaggt gtttgaaaag cttctagaac agcaaatgtc gtcttttatc accgagaaca      2940
     acctactcac ggagcaccag gcgggtttcc ggaaaggcca aagcatacaa accgcgactt      3000
     cccgtgtgtt cgacgacttg gcacgcacga cagacaggag aggatctgcg gtgctgttgc      3060
     tgctcgattt ttccaaggcc ttcgacacca taccccacaa caagctgtgt acgaagctcg      3120
     aaacgcaatt caattttggt ccatccgcgg tgaaccttat cagatcgtat ttagaaaacc      3180
     gacgccaaac cgttttctgt ggagatctac agtcagtaag cagcatcgta gattccgggg      3240
     tacctcaagg ctcgattgta gggcctctgc ttttctgttg tcacgttaac gatctaccac      3300
     ctgtgctcag atattgctcg attcaactct acgcggatga tgtgcaactg tacattggtc      3360
     gactgggccc atgctcccga gaactcatca ggatggtcaa cgaggatctc gataggattg      3420
     ctgtttggtc gcaacggaac cagctatttg tcaaccaagc gaagagcaaa gcgctgtttg      3480
     tgcagggtcg tcgtagaaac aaagcgcaac tcgatctgct tcctcgtatc accatgagcg      3540
     gccaagccat tgaatgggta gacagtgcga aaaatctggg tttcatcttc caagcggacc      3600
     tgcaatggga cggactcatc cagcaacagt gtggaaaaat ctatggcagc ctacgcacac      3660
     tccgaagctg cacatccgct gctccagtca gtacgcgtct taagctgttc aagtcgctga      3720
     ttctgcctca ttttcttttc ggagagctgc tacatgtcaa ccctagtgct ggtgcattgg      3780
     atcggttgcg tgttgcgcta aattgctgtg ttcgttacgt ttacggcctc acccgatatg      3840
     atcatgtcag tcacctacaa cggaacctgg ttggttgccc tctggacaac ctgtacgcac      3900
     accgctcgtg tctattcctg cgcaaactmc tcaccacgcg ctccccacca gaactctacc      3960
     agaagctgca gcagttcaga ggccgccgcc tgttgaattt gatcattccc gccaacagaa      4020
     ctttgaccta ctccagttcc ctgttcgttc gaggtgtggt caactggaac atggtgccaa      4080
     cggaactcaa acacggggta tcgcaagcaa cattcaaaag aaactgttta gagttctgga      4140
     acagggagta aaccaaacaa acgccgggaa acgagagcag cgtaagagca gcgcgcagcg      4200
     tgtaaccact gtcgcgcccg gaggtcccgg agccccccta accacaagct ataggaagag      4260
     tggcataggg acaaccctcc ggctcctccg gggtgcctgg aaaacacgac acgccagctg      4320
     aagaatccac ggaggtatcc gagtgacccg gggcccccct aaccacaagt tacaagaaga      4380
     gtggaatagg gacaaccccc cgggcactcg agtcccctgg atgaggtcgc ataaggggca      4440
     aacccccatc ccctcggatg aagcatggac tacgcatgga caactcaacc cactactcgc      4500
     aactcaagag aacaccgaga agaacgacat caaccaagga aaaccgttta gttaataagt      4560
     gtaatattag ttagcaaaca cagatgatac cggaggtagc aattaaaaag gtgcaaacct      4620
     tacgctacca gattaaataa ataaataaat aaaaa                                 4655
//
ID   Kiri-1_DAzt repbase;    DNA;    INV; 4631 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4631
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 877-877 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           455..1354
FT                 /product="Kiri-1_DAzt_1p"
FT                 /translation="MSKTAAKRVRSDSSLDLRSGRISDTLSPQLIELINNR
FT                 FDEQAKHISCSVREAEERILREIADKFETRLQSLSEEVELLGRRIEKLEDG
FT                 SCEMRVLCSKVEELEAKLQAKENADAEASIANDVRVHGVPLLEEENLKTLF
FT                 NSLCYSLGLTPPPKVKEIFRVKVRDHAQNIVVDPVVIIKFDSRRDKIMLMQ
FT                 RAGEHRRQTKQPLSLELLGIQSKQPFYINEQLSKTNYDIFREAMKMKKRNA
FT                 LSAVFTRRAMVYVRQSVRGEFVCLKSMSELCALQRVEAVAEEATQSVSGGT
FT                 GTGRSNFR"
FT   CDS           1528..4365
FT                 /product="Kiri-1_DAzt_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDDNAWSSGSSSYTMLRILGNQGEGLRVCHINAQSLT
FT                 KKIEEFRYLFVKSNIDVICVSETWFSSHVSNLLVECTGYDLFRSDRDSHAG
FT                 GVAIYVSNRLNAKLVCNHPSESAVEWIFVQVTSTIHSSKILIGCVYRPHRH
FT                 IEYKNLTDVLSTMSLAYTDVILAGDFNSNVLRERQLSDDIGSMGLTLVNSS
FT                 APTHFSNHCDTLLDLFFVTDCHKISAYSQLSMPMFSKHDLIFLTYNFHTDL
FT                 TESRIVYRNFRNIDYALLSADFISCDWDSIYDYANINSQLTVLQNNIMYLY
FT                 NRSIPLVTKTVNPRGNLWFNSKIKILINKRDTAFKKWKRYRTAHHAAQYKI
FT                 IRKNVIQLINSEKRKYFCNKFNFARSNQQKWAYIKELGVGKSTTPRNCDID
FT                 PDELNRIFLDCKVPEVTKADYVECVPQNLYSNCDDVHCFCDNGTCDNSFSF
FT                 SCVTELDVLESMLKIKSNATGMDDINPKFIKMLLPNILPYITYIYNTALTQ
FT                 SVFPDSWKVAKILPIPKSAKEYRPISILPYLSKILERLMANQMTNYLTTKK
FT                 LLTNKQSGFRVGRSCTTAIINVVEGIREKLDSDNITFLTLLDYSKAFDTVN
FT                 HEILCFKLSRLCNFSRAATRLIVSYLSNRMQSVCINNMYSSLLCVKRGVPQ
FT                 GSVLGPLLFSMYVNDLPSILSSCDVHMYADDVQMFVSRPISRINDCIRVCN
FT                 SELNSVSQWAKLNGLGLNPNKSKCIVIGKRKFDTNALQKLTIENTPIEYVE
FT                 RANNLGFMFNQTLTWDDHINRSVGKATGILRNLYLTKDFLPVRIRQIIAKM
FT                 YIIPVLFFGIEVFSDSNSASQRKLQVAFNNIARYIYNRRRTDHISDDMIKI
FT                 FDMPLKSWIDFRVLVLLQKVIYTKEPYYLYERLKFSTSRRTKNIICFKYRY
FT                 TCTMKQFFVHAARVWNHLPHAIKAISGGVQFKIALENHLRTT"
XX
SQ   Sequence 4631 BP; 1423 A; 885 C; 948 G; 1375 T; 0 other;
     aacagccggt cgtctttccg cgtcgctcct gcattttctg cttttactct ggattcactc        60
     aacattaatt gccaatagtt gtgtatatca cggaacttaa cataactgaa caataattgt       120
     gtgaatatca gtgattcggt agttgcaggt tgaacaaata aataaataaa taaatttaaa       180
     gacgcgcaag ctatttgtta ttgcttttgc ccattcctct ctggatcttc gctctctgtg       240
     ctcatcgttt cgtgcacttc atctgttgca ttgcctacgc actgctcatc gcttcgtcgc       300
     tttgctggat cgttcgccgt tcgccgtgca aatagctact gctgagcgtc gtgttcgctc       360
     tgaggcctac tccctctctc aacctacgct ctacgcccta cgctctctgt gcatctcttt       420
     tggactttgc tctgttgtta aacggcaaag cgggatgtca aaaactgcag caaagcgcgt       480
     ccgcagtgac tcgtcgcttg acttgcgatc tggtcgcatc tcagatacgc tttcgccgca       540
     gctgatcgag ctaattaaca atagattcga tgagcaggcg aaacacatca gctgcagcgt       600
     gagggaagct gaggaaagaa ttctgcgtga gatagcagat aagtttgaga ctagacttca       660
     gagtctctcg gaagaggtag agctgcttgg ccgtcgaatt gagaagcttg aggatggaag       720
     ctgcgaaatg cgtgtgctat gcagcaaggt ggaggaactg gaggcgaaac tccaagccaa       780
     agagaatgca gatgccgaag caagcattgc aaatgatgtc agagtgcatg gggtgccctt       840
     actggaagag gagaacctca agactctctt caacagcctc tgttactcat taggcctcac       900
     accaccacca aaagtgaagg agatttttcg ggttaaggtg cgggaccatg cacagaacat       960
     cgttgtagat cccgttgtta tcataaaatt tgatagcagg cgtgacaaaa tcatgctgat      1020
     gcaacgggct ggagagcatc gacgacagac caagcagcct cttagcttgg agttgttggg      1080
     aatccagtcc aaacaaccct tctacatcaa cgagcagctc tcaaaaacca actacgacat      1140
     cttcagagag gcaatgaaga tgaagaagcg aaatgctctg tcggctgtct tcacccgccg      1200
     tgcgatggtc tacgttcggc agagtgttcg cggcgaattt gtgtgcctta agagcatgtc      1260
     tgagctctgt gccctacaga gagtggaagc tgtggctgag gaggcgactc aatccgtatc      1320
     tggaggaact ggaactgggc ggagtaattt tcgttagaat agaattaatt tttgtcccct      1380
     actttatgtt ttacattagg tttaatatct ctactcatct tgtaatagtc cctgttagga      1440
     atctcactct ctttacatca tctccccgta ctctcacaac agtggtgttt ggattgcctt      1500
     ctctaatttg tttttattcc agtgattatg gatgataatg catggtcgtc cggctcgagc      1560
     agctatacaa tgctaagaat acttggcaat caaggggaag gtctgcgtgt atgccatatt      1620
     aatgcccaaa gcctaactaa gaaaatcgag gaatttaggt atctatttgt caagtccaat      1680
     attgatgtca tatgtgtgtc agaaacgtgg ttttcgtctc atgttagtaa tttgttagta      1740
     gaatgtactg gttatgattt gtttcgatct gatcgagata gtcatgctgg aggtgtagcc      1800
     atatatgtaa gtaaccgttt aaatgctaaa cttgtatgta atcacccaag tgaaagtgca      1860
     gttgagtgga tatttgttca agtcacaagc acaatacatt cttccaaaat tttaataggc      1920
     tgtgtgtata gacctcatcg acatatagaa tataaaaatt taactgacgt attgtctacc      1980
     atgtcgctgg cctatacaga tgtaatatta gctggggact tcaacagcaa tgtcctgcga      2040
     gaaaggcaat tatcggacga cataggatcc atgggattaa cgttagtaaa ttcgtctgca      2100
     cccacgcatt tctcaaatca ctgtgatacc ttacttgact tattttttgt aaccgactgt      2160
     cataaaattt ctgcttacag ccaactatca atgccaatgt tttcgaaaca cgatctaata      2220
     ttcttgacct ataattttca taccgaccta actgaaagca gaatagttta tagaaatttt      2280
     agaaacattg actatgcctt gttaagtgct gactttattt catgtgactg ggactctatt      2340
     tatgactatg ctaatattaa ttcacaactg actgtcctac aaaataatat aatgtatcta      2400
     tataacagat cgattccgct ggtgacaaaa acggtcaacc ctcgtggaaa tctatggttt      2460
     aattcgaaaa ttaaaatatt aattaacaaa cgagataccg cttttaaaaa atggaagcgt      2520
     tacagaacag cccaccatgc tgcacaatat aagataatta ggaaaaatgt gatacagtta      2580
     atcaactcag agaaaagaaa atacttctgt aacaaattta actttgcgag atcgaaccag      2640
     cagaaatggg cgtatattaa agaactgggt gttggtaaat ccactactcc gcgcaactgt      2700
     gatattgatc ctgacgaact taatagaatt tttttagact gtaaagtacc tgaagtgact      2760
     aaagctgact atgtcgagtg cgtgcctcaa aatctctata gtaactgtga tgatgtacac      2820
     tgcttctgtg ataatggtac ctgtgataat agttttagtt tttcatgtgt aactgagtta      2880
     gatgtcctcg aatcgatgtt aaagattaag tcaaatgcca ctggaatgga tgatattaat      2940
     ccgaaattca taaaaatgct tttgccaaac atattgccgt acataactta catatacaac      3000
     acagcgttga ctcaatccgt atttcctgat tcttggaaag tagctaaaat acttccaatt      3060
     ccaaaatcag ccaaggaata caggccaatt tccattctac cttacttgtc aaaaatttta      3120
     gagcgactta tggctaatca gatgacaaat tacttgacaa ctaaaaaact tttgacaaac      3180
     aagcaatccg gttttcgagt gggcagaagt tgtacaacag caatcataaa cgtagttgaa      3240
     ggtataagag aaaaattgga ctcggacaat ataacgtttc tgacccttct agattatagc      3300
     aaggcttttg acacggttaa ccacgaaatt ctttgtttta agctaagtcg tctatgtaat      3360
     ttttcgcgtg cagcaacaag actaattgtt tcgtacttga gtaatcgtat gcagtctgtg      3420
     tgtataaata atatgtactc gtcattactt tgtgtcaagc gtggcgttcc tcaaggatcc      3480
     gttttagggc cattactgtt ctctatgtat gtaaatgatc taccgagtat attgtcaagt      3540
     tgtgacgttc atatgtatgc cgatgatgtt caaatgtttg ttagtcgtcc tattagtaga      3600
     attaatgact gtattcgtgt ctgtaatagt gaattgaaca gtgtaagtca gtgggctaaa      3660
     ctgaatgggc taggattaaa tccaaataag tcaaaatgta tagtcatagg taaaagaaag      3720
     ttcgacacta atgcactaca aaaattgact attgaaaaca cccccattga atatgtagaa      3780
     cgcgcaaaca acttaggttt tatgtttaac caaactttga catgggatga tcacataaac      3840
     agatcagtcg gaaaagctac tgggatactt agaaacttat acctaactaa agattttctc      3900
     ccagtgagga taaggcaaat aattgcaaaa atgtacatca taccagtact tttctttggt      3960
     attgaggtgt ttagtgacag taactctgcc agccaacgca agctgcaagt tgcctttaat      4020
     aatatcgcga gatatattta taaccgacgt agaactgacc atatttcgga cgatatgata      4080
     aaaatatttg atatgccact taaatcgtgg atagatttta gggttttagt actactgcaa      4140
     aaagttattt acaccaaaga gccatattac ttatatgagc gactcaagtt tagcacgtca      4200
     agacggacga aaaacattat ctgctttaag tataggtaca catgcaccat gaaacagttc      4260
     tttgtacatg ctgctcgagt ctggaatcat cttccccacg ccatcaaggc aatcagtggg      4320
     ggagtgcagt tcaaaatcgc actggagaac catctacgca ctacataact tgaatttgag      4380
     atagtagaga ggggttgaat agggagtaag agtaagagtg aagttcctgg gaactaaatt      4440
     gaaactaaac taaatattat attattaaaa tgttagtata taaattcgaa tgtatgtaat      4500
     tgtaattgta ataacttctt aatgttagta atttaaatgt caaaagtaat gttacactcg      4560
     ttgtgactag cgccctaatt tataagtata caatgcttgt cgcgctagga tgaaataaat      4620
     aaataaataa a                                                           4631
//
ID   Kiri-1_DBi  repbase;    DNA;    INV; 4130 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Kiri non-LTR retrotransposon from the Drosophila biarmipes
DE   genome.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4130
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 937-937 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1571..3040,2971..3228,3206..3565,3514..3792)
FT                 /product="Kiri-1_DBi_1p"
FT                 /translation="LIILYVYLLFGCYPCWGFQQQYPKGILNLVNSSVPTH
FT                 FSNHCDTLLDLFFVTDCDKISMYSQLSMPMFSKHDLIYLIYNINTDLTENH
FT                 IVYRDFKNIDYALLSTDCNLCDWDSIYDYTNINSQLTVLQDNIIYLYNRSV
FT                 PLVTKMTKPRENPWFSLAIKVLIDKRDTAFKKWKRYKTSQHAAQYKTLRKK
FT                 VSQLINQEKRKYFFNRFTRATTSQQKWADIKKLGIGKSNTTRCDANPDELN
FT                 KXFLDCKVPDVTKDDYLDHLPQNTYRNCDNINCGCDNGTCDSSFSFACVTE
FT                 SDVLKSMLLIKSKFIKIILPKILPFITFIYNSALTQSIFPDSWKLAKIIPI
FT                 PKSANEYRPISVLPYLSKVFERLMADQMTNYLKANNILTDKQSGFRVGRSC
FT                 TTAIIKIVEDIRVKMDTDNITFLTLLDYSKAFDTVNHEILCIKLKRLCNFS
FT                 RASVQLISSYLCNRGQSVFVNNVYSSFLCLKRGVSAVLFVELMNVCVFVFS
FT                 MSETWCVSRPIRRINECISVCQTELQIVSQWAKINGLGLNPKKCKCLVVGK
FT                 RGMATDVLQKLTINKAPIEYVKTISRIYVKPYLGFTFNQTLTWDDHINKSV
FT                 GKMYAILRNLYLTKDFLPTKIKETIAKMYLIPVLFYGIEVFSDCSSVGQRK
FT                 LQVAFNNVARYIYNRQRADHISDVTIKIFNMPLKSWTLGPYYYSIKLHATK
FT                 ILDLRALLLLHKIISRQEPSYLYEKLTFSSSRRTRNIISLKYKYLCTRRQF
FT                 LVYAVRTWNQLPHTIKAISNETQFKNALQDYLRAXPDY"
XX
SQ   Sequence 4130 BP; 1396 A; 767 C; 733 G; 1221 T; 13 other;
     caacccaagc gaacggacgt gttttttctt aagctccaaa taaaaatagt ttttactctg        60
     aacttatagc taaaaaagcg tagacaccag taaaaagtgt aataagatct cgctttcact       120
     gtgaatatgc aaatcttctt tagaaccgcc aagtttgcca tataaactga tttaaataaa       180
     caaacaatta aagtcgaacg ccccatctgt atttgtgtat ttgtgcacga acattgaacc       240
     taccgccgtc gaacttatct gtmcccactc ttcacactct tcgcgtcgct atgtctttaa       300
     attcggcttc agaaaacaaa cgactccgca gcaacaccaa caacattgtg ggwcccaccg       360
     agcgcatgtc tgatgstccg ccgccgtggc tactagagat gctcaactcg cgcttcaaag       420
     aacaaactga gcaaatagca gaggaccgca ttctagatgg gctcacaagc tgggtgctwa       480
     cgcgtcaagc ttctggatcg ggaggctggc gagctgacca ccctgagaga gagagtgggg       540
     gagatcgagg caaaattggc agcacagcaa tggcacatca ggcgtgtgac ttacgcgtgc       600
     aggaattcca tttattgagg tggtaaaact tgaagtgtat aaccagctct gtttctcact       660
     taagctaaca ccgccaccga aaatcaagga gctattccgg gccagaaaag cacaaaactc       720
     ttctgtagac ccggtggtca tacttcgmat ggaaaatcag cacggaaaaa tcacttgctg       780
     cgctgtatcg gagcttatcg ccgcacagca aaacaacaac tagcttgcat atgatgggct       840
     tcactctcaa gccgctctta tgttaataag cagctcttga gagagcacta wgtgattttt       900
     aaagaggcaa tgaagcttaa aaagcgcaga ctgctctctg ctgtgtttac ccgcagaggc       960
     ctagtccacg tctactgcgt cgagagtatg gatcagcttt tggcgctctc gcaagacctt      1020
     ggtawgccag cttctcctct cccgtcgcgs tctgcatctt cgtcattgtg agggatttcg      1080
     ccgctgatat gttcctgtat cttaatctaa wtawaactag gtacttwaaa ttcgtatatt      1140
     ctctctttat tagacttaag atttttctaa ctcttaaaat tacgactctc ttaattaggt      1200
     atctcactct ctctcaaaac tcttttttgt gtttaatagt ggtgcgtaga ctattattat      1260
     agcaaaagca ataggtgcgt atgagttact gattgtctgg tttgttgatg atggatgaca      1320
     atgtatgcac gccgagtgcg agcagctata cgatgcttag agtacttggt aatcagagaa      1380
     ctggccttcg tgtatgccat attaacgctc aaagcttggt aataaaatta agaatttagg      1440
     tatttattgt taatgcaaat tcggtttgtc cgaaacaccc aagtgactag ttccgttgaa      1500
     tggatatttg ttcagatcac aaatacttta tagtcatcag aaactttatt gactaccaaa      1560
     atttaattga cttattatcc tctatgtcta tctcttattc ggatgttatc cttgctgggg      1620
     atttcaacag caatatccta aggggatatt aaatttagta aactcatcag tacctacaca      1680
     tttttcaaac cactgtgata cactacttga cttatttttt gtaactgact gtgataaaat      1740
     ttccatgtat agtcaacttt caatgccaat gttttcaaaa cacgatctaa tttatttaat      1800
     ttataatatt aatacagact taactgaaaa ccatatagtt tatagggact ttaaaaatat      1860
     tgactacgcc ttgctaagta ccgactgtaa tttatgtgac tgggactcta tttatgacta      1920
     tacaaatatt aattctcaat tgactgtcct acaagataat ataatatact tatacaaccg      1980
     atcagtacca ttagtgacga aaatgaccaa gcctcgtgaa aatccatggt ttagtttagc      2040
     aattaaggta cttattgaca aacgggatac tgcatttaaa aaatggaagc gatacaagac      2100
     aagccagcac gcagcgcaat ataaaactct aagaaaaaaa gtttcacaat taattaatca      2160
     agagaaacgt aaatatttct ttaacagatt tactagggca acaacgagtc agcagaaatg      2220
     ggctgatatt aagaaactag gcattggtaa atccaacacc acccgatgtg atgccaatcc      2280
     tgatgaactt aataaamaat ttttagactg taaagtacct gatgtaacaa aagatgacta      2340
     tcttgaccac cttcctcaaa atacatatcg aaattgtgat aatataaatt gcggctgtga      2400
     taatggtacc tgtgatagta gttttagttt cgcgtgtgta actgagtctg atgtccttaa      2460
     atcaatgtta ctaattaagt caaaatttat aaagataata ttgccaaaaa tattaccatt      2520
     cataactttt atatataatt ctgccttgac acaatcaata tttcccgact cttggaaatt      2580
     agctaaaata ataccaatcc caaaatctgc aaatgagtat aggccaattt cagtcctacc      2640
     atatctgtca aaagtcttcg aacgacttat ggctgatcag atgacgaatt atttaaaagc      2700
     taacaacatt ctaactgata agcaatcagg gttccgtgtt ggcagaagct gtacaacagc      2760
     tataattaaa atagttgaag acatcagggt aaaaatggat actgacaaca taacattttt      2820
     gactctttta gattatagca aagcatttga cacggtaaat cacgaaattc tttgtattaa      2880
     gttaaaacgt ctatgtaatt tctcgcgtgc atcagtgcaa ctaatttctt cttatttgtg      2940
     caatcgtggg cagtcggttt tcgtaaataa tgtgtattcg tcttttctat gtctgaaacg      3000
     tggtgtgtca gccgtcctat tcgtagaatt aatgaatgta taagtgtttg tcaaactgaa      3060
     ctgcaaattg ttagccagtg ggcgaaaatc aatgggcttg gcttaaaccc aaaaaagtgt      3120
     aaatgtcttg ttgtaggtaa aagagggatg gctaccgatg tattgcaaaa attaaccatt      3180
     aataaggctc ctattgagta tgtaaaaacc atatctagga tttacgttta atcaaacatt      3240
     gacgtgggat gatcacatta ataaatctgt gggaaaaatg tatgcaatac ttagaaactt      3300
     atacttgacc aaagacttct taccgaccaa aataaaagag acaattgcaa aaatgtacct      3360
     cataccggta cttttctacg gaatagaggt attcagtgac tgcagctccg taggtcagcg      3420
     caagctgcag gtagcgttca ataatgtggc aagatatatt tataatagac aaagagctga      3480
     ccatataagt gacgttacaa ttaaaatctt taacatgcca ctaaaatcct ggaccttagg      3540
     gccctattac tactccataa aattataagc agacaagagc cgtcgtatct ttatgaaaaa      3600
     ctcactttta gttcgtcaag aagaaccaga aatataataa gccttaagta taagtaccta      3660
     tgcacaagga ggcagtttct tgtatatgct gttcgcactt ggaaccaact gccacacact      3720
     atcaaggcaa tcagtaacga aactcaattt aaaaacgcac tgcaagacta tttaagggca      3780
     cmacctgact attaaactac acaacttagc gtattggaat ttaaatttag agagaaagtg      3840
     agaactaata aaaatggaaa ttaaaaatta aaattttaaa gctaaaatta gcaaattaaa      3900
     aattaaaata aaaataagaa taaataaata ttaaaaacta aaaattgtta taaataataa      3960
     taaaaataat aataatagta ataatgaaac tgatatatat tcaaattgta tttgttaaga      4020
     ttagtaatta tttgcattat aagttcaaat caaattttac aattgtgact agcgccttaa      4080
     tttataagta tgctacatgc ttgtagcgct gggataagca ataaaataaa                 4130
//
ID   Kiri-1_DEl  repbase;    DNA;    INV; 4396 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4396
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 571-571 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           314..1234
FT                 /product="Kiri-1_DEl_1p"
FT                 /translation="MSSAAKRLRKETHSDLKGARDSDVQLLHTIDLRFSEL
FT                 KESLAGEIRDGEARITGTLEEKFKLIAADCNKLXLRVTQLESEVREMGMLR
FT                 QRVQELEAKLSKNCQDQRVDELEAKWVASCNAQAASEVACDLRWHGVPQVQ
FT                 GENVKALFHALCFSLKLTPPPKVRXIFRTRPRKSTRTVVDPIIIIKMEHVH
FT                 DKATLLRAIGAYRKENKTQLSLKLIGLDSPAFIYINEQLTKTKYEIFKRAM
FT                 HLKRLKRLTAVFSRRGDIFVKEREGGEAICVQSLGELAQMEICTPDELAAL
FT                 EAASSGTLNDNSFRT"
FT   CDS           1412..4234
FT                 /product="Kiri-1_DEl_2p"
FT                 /translation="MGDSNNNNININPNRSNSHAMLRVLGEKRAGLNVCHI
FT                 NAQSLTRKIEEFRYLFINSSVDVICVSETWFVPNLCDVLVECDGYNLHRSD
FT                 RDSHGGGVAIYVSKKLCSTFICKHSTSSAIEYLFIEIRCQRYADKLLIGCI
FT                 YRPNCRIDYEQFLNIIPDVSINYSDVIITGDFNSDILRXSHLAEDMKSLGM
FT                 KLVNFVSPTHFTKTRNSLLDLFFVSNTDKVATYDQLIVPSFSKHDLIYLTY
FT                 ALDLQYLDHPIVFRDFRNINYDLLDSTFNLCNWNDIYSLSEVDEQVNLLQN
FT                 NICYLYNCLVPVRSKVIRFSEKPWFQRNIKDAILQRDGAYNKWRRYRTPQA
FT                 YAVFKSLRKKVTKLTDTAKANFYSHKFNNASSTAQTWKIIKNLGICKVKPR
FT                 LEQDMNVNELNKKFLSCTVPEITENKYLNPRFVPETVCDIRFRFLCVNQCD
FT                 VLQSILRIKSDATGSDNINPKFIKILLPKILPYITYTFNTVLTKSTYPDCW
FT                 KAAKIIPIPKSNNEYRPISILPYLSKVFENLMADQINKFMSDNAMLTNNQS
FT                 GFRKNRSCTSAILKIADDIREQIDENNVTLLVLLDYSKAFDTVNHNVLCAK
FT                 LRNMFMFSKTSVKLVSSYLQNRRQSVVLSSVSSSYENVNRGVPQGSVLGPL
FT                 LFTLYVNDLPNALSECNVHLYADDVQMYVSRPLNRINECIDVCNRELERVN
FT                 EWAGNNGLGINPSKSKCLVISKRKIIFNNLQPLSMNSTPLEYVDTAVNLGF
FT                 TFNRTLTWNDHIKKSVGKTYGIIRTLSVTKNCLPTHIRLLIAKTCIVPALF
FT                 YGVEVFSNCDTTSKNKIKVLFNCIARYIFNQPHTDHVSEFSLKIFDISLNE
FT                 WIKMRNLIFLQKIIFQKEPSYLFEKLQFTSSRRANNLTCIRPRSLTSERQF
FT                 LINAIRSWNQLPNHLKNISSATQFKIKLFTHLKNTIT"
XX
SQ   Sequence 4396 BP; 1478 A; 855 C; 816 G; 1242 T; 5 other;
     gagagagaaa tagacgcact tttgtgaagc tccgctttaa acaccgaaaa acaccttaaa        60
     ctcggcttaa aaaaattaaa aactgcttac ggcagcanca tnaataagag tacaacacgt       120
     taaagttctt gttgcccgga ataaatcggt tttaagcagt aaatcgcttc ttaataaatc       180
     cacaattaag tgcaacaaca atccaataaa gaaacagtgc atagcaaaac acaagagcac       240
     agagacaaaa cactcagcac atcaaaacac tcaacacatc aaaacactca accctctcgt       300
     caccaacaca aatatgtctt cagcagcaaa gcgacttagg aaggaaactc actccgatct       360
     gaagggagcc cgtgactccg atgttcaact gcttcacacg atcgacctca gattttccga       420
     gctaaaggaa agtcttgcag gggagatccg tgatggcgag gcacgtataa ccggcactct       480
     ggaagaaaaa tttaagttaa tagcagctga ctgcaacaaa ctcncactga gagtcactca       540
     attggagagc gaggtgagag agatggggat gctgaggcag cgggtccagg agctggaggc       600
     gaaactgtcc aaaaactgcc aggatcagcg cgttgacgag ttggaggcaa agtgggtggc       660
     ctcctgcaac gcacaggcgg cgtctgaagt cgcctgtgac ttgcgttggc atggggtccc       720
     acaagtccag ggggaaaatg tgaaagcact ttttcacgca ctgtgcttct ctctcaaact       780
     gaccccgccg cctaaagtac gtncgatttt tcgaacgcga ccgcgaaaat cgacccgtac       840
     agtagtggat ccaattataa ttattaaaat ggaacacgtg cacgataagg cgacactgct       900
     gcgtgcgatc ggggcatacc gaaaagaaaa caaaacgcaa ctgagcttaa agctcatcgg       960
     cctagactcg ccagcgttta tatatataaa cgaacagctg accaaaacaa aatatgaaat      1020
     tttcaagcgg gcgatgcatc tcaagaggct gaagcgccta acagctgttt tctctcgccg      1080
     tggagatatc ttcgtaaagg agagagaggg aggggaggcc atttgcgtgc aaagcctggg      1140
     cgaactggct caaatggaga tttgcacccc cgatgaatta gctgcgctgg aagctgctag      1200
     ttctgggaca ttaaatgata attcatttcg cacctaagag gcgcttatat ttatatacca      1260
     ttgttgtgaa attatcagta gttttattat atttatttag gattagtatc agtcgcatta      1320
     attttatttt gtttcttggt gtggtgtgtc tttatgtcat aaatatttat agactgcgag      1380
     cgcagctaat attacaatta aataatttaa aatgggtgac agcaacaaca ataacataaa      1440
     cataaatcca aatcgatcaa atagccatgc gatgttaagg gttctcggag agaagagagc      1500
     tggtcttaat gtgtgtcata taaatgctca aagcctcaca cgaaaaattg aagaatttag      1560
     atacctcttt atcaattcga gcgtagatgt tatatgtgtt tctgaaactt ggtttgttcc      1620
     taatttatgt gatgttttag ttgaatgtga tggctataat ttgcatcgct ctgatcgtga      1680
     tagtcatggg ggtggggttg caatatatgt tagtaaaaag ttatgttcca cgtttatatg      1740
     taaacactca accagtagtg caattgaata cttatttata gaaattagat gccaaagata      1800
     tgctgataag ctactaattg ggtgtatata ccgacctaac tgccggattg actatgaaca      1860
     atttttaaac atcattcctg acgtgtcaat taattattca gacgtcatta taacaggcga      1920
     ttttaatagc gatattttaa gggantccca ccttgcagag gacatgaaat cgctggggat      1980
     gaagttggtt aactttgtgt cccctacgca ttttaccaaa acccgcaact cgcttttaga      2040
     cttatttttt gtgtctaata cagacaaagt agctacatat gaccaactta ttgtcccatc      2100
     gttctcaaaa cacgacctca tatacttgac ttacgcactt gacctacaat accttgacca      2160
     tccaatagtt tttagggact ttagaaatat caactatgac cttttggact ccacctttaa      2220
     tttgtgcaat tggaatgaca tatattccct ttccgaagta gacgaacaag ttaacctttt      2280
     acaaaacaat atttgttatt tatataactg tctcgtacct gttcgtagca aagttattcg      2340
     tttttctgaa aaaccatggt tccaaagaaa catcaaagac gcaatattac agcgtgacgg      2400
     ggcgtacaat aagtggagaa ggtacaggac acctcaagct tacgcagtgt tcaagtcatt      2460
     gagaaaaaaa gtgaccaaac ttactgacac cgccaaggca aatttctatt cccataaatt      2520
     caacaacgca tcttccactg ctcagacatg gaaaataatt aaaaacctgg gaatatgcaa      2580
     agttaaacca agacttgaac aagacatgaa tgtaaatgaa cttaataaaa agttcttaag      2640
     ctgcacagta cctgaaatca ctgaaaataa atatctgaac ccacgatttg tacctgaaac      2700
     tgtctgtgat attagattta ggtttttgtg tgttaatcag tgtgatgtcc ttcaaagtat      2760
     actaagaatt aagagtgacg ccactgggtc tgacaacata aaccctaaat tcataaaaat      2820
     tctgctgcca aaaatcctgc catacataac ctataccttt aatactgtac tgacaaaatc      2880
     tacttatccg gactgttgga aagcggcaaa aataattccg attcctaaat caaataatga      2940
     gtacagaccc atctccattt taccatacct atcaaaggta tttgagaatc tcatggctga      3000
     tcaaattaat aaatttatgt ccgacaatgc aatgcttact aataatcagt ctggttttag      3060
     gaaaaacaga agctgtacct cagctatttt aaaaattgca gacgacataa gggaacaaat      3120
     agacgaaaac aatgttacac tcttagtttt actggactat agtaaggcct tcgatacagt      3180
     aaaccataat gtcctttgtg caaaactacg taatatgttt atgttttcta aaacttctgt      3240
     caaacttgtg tcttcgtacc tacaaaatcg tcgtcaatct gttgtactgt ctagcgtttc      3300
     gtcctcatat gaaaatgtta atcgtggtgt accccaaggg tctgtgcttg gtcccttatt      3360
     gtttacctta tatgttaatg accttcccaa tgcgttatct gaatgtaatg tacacttgta      3420
     tgctgatgat gtccaaatgt atgtgagtcg tcctttaaac agaataaatg aatgtataga      3480
     tgtttgtaac agagaacttg aacgtgtaaa tgagtgggcc ggcaacaatg gacttgggat      3540
     caacccatca aaatcaaaat gtcttgtcat aagtaaaaga aagataattt ttaacaattt      3600
     gcagccactg agtatgaata gcacgccact tgagtacgtt gatacagctg taaacttagg      3660
     ttttacattc aacagaactc ttacctggaa tgatcatatt aaaaagtctg tagggaaaac      3720
     atatggcata ataaggacat tatccgtaac taaaaattgc ctgcccaccc atatacgttt      3780
     actaatagct aaaacctgca ttgttccagc gctattttat ggagtagaag ttttttcaaa      3840
     ctgtgacact accagtaaga acaaaattaa agttctattt aattgcatag ccaggtatat      3900
     attcaaccaa ccacatacag atcacgtatc cgaattttcg ctgaaaatat tcgatatctc      3960
     gctaaatgaa tggataaaga tgcggaactt aatttttctg caaaaaatta ttttccaaaa      4020
     agaaccttcg tatcttttcg aaaaacttca atttacatcc tctagaagag caaacaatct      4080
     tacttgcata agacctagat cattgacatc cgaaagacaa tttttaatta atgctattcg      4140
     atcatggaat cagctcccaa accatcttaa aaatattagc agtgccacgc aattcaagat      4200
     aaaattattc acacacctta aaaacactat tacgtaaatt aaagtaaaaa tagaaggcga      4260
     cttaggttag tttttatgaa aattagtttt aagtataatg taacaattaa atatttgcaa      4320
     actcttagtg actagcgcat taacttataa gttccaaact tgtagcgtta ggatgaaatt      4380
     ttataataaa tacaaa                                                      4396
//
ID   Kiri-1_DF   repbase;    DNA;    INV; 4151 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   26-SEP-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4151
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 982-982 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. The second ORF is incomplete.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           302..1147
FT                 /product="Kiri-1_DF_1p"
FT                 /translation="MPPVTKRQRENTATDLGGVRSSDAPSPQLIQLVDQRF
FT                 AEQAXLISSKMQEAEERFLHMLEERLGGLAGQVQQLAQRVQYLEREVADLD
FT                 IIRQKLGVLESNFVAQEKAGVARSLRIHGVPTAEGEXCFNLHITPAPAIKE
FT                 IYRTTRRNATATVVDTAIMVKLERVGDKAAILRATAAYRREMKQQLTLKDF
FT                 GIDSPAVVYIREQLPKGAYEAFREAMRMEKXKQLVAVFSRRGAVHIKEREN
FT                 SEIVAIESYQELLAWKKREPINTNRQAEVSPLQTNNHSXRS"
FT   CDS           2264..4117
FT                 /product="Kiri-1_DF_2p"
FT                 /translation="MAIAKRNKAFHKWKRYKTDSHYIVFAKLRKTVTKLIS
FT                 SAKSNYLSSKFDNAVNTKQTWNHLKSLGIGKQKHAIIENINVEELNNKFLS
FT                 INVPEATENIYLNYPPTHTCDTRFNFICVSPSDVLSGICRIKSNAVGLDDL
FT                 SPKFLRILTPKILTYITHIFNTAIMTSTFPDAWKAAKIIPVPKGRSCEFRP
FT                 ISILPFLSKVFENVMATQVNKFISDNKLITDLQSGFRKNKSCTSAVIKISE
FT                 EIREHLDKGEVTILTLLDYSKAFDTVDHLILCTKLRSLFFFSDTAIKLISS
FT                 YLSNRCQAVVTSTCSSSFKYVKRGVPQGSVLGPLLFVIYVNDLVNVVCDGP
FT                 LIHLYADDVQMYVSRPLHRINECIEFCNEQLKKISVWAKQNGLGLNPSKSK
FT                 ALIIYKNNIDTSNIKKLNVNNSPIEYVNHTANLGVIFNKTLTWNNNINQAT
FT                 GKTYGLLRMLHTTKNYLPTNIRLLIAKTCLVPTLMYGVEIFANCDSVSFRK
FT                 INVCFNNIVRYVYGLRLYDHVSTLACNILGLSIKDYMNFRTLILLHKIIYS
FT                 KEPAYLYRKLQFASSERMKNIIVKRHRTLTSERQFFIHAIRIWNQLPCSIK
FT                 LIGNDTLFKRALLRIYQNTA"
XX
SQ   Sequence 4151 BP; 1412 A; 814 C; 771 G; 1148 T; 6 other;
     gccaacaagg ttaccactta aaacttcgaa aatagacgat ttttatctcg caaaagtgcg        60
     ttaaacacaa gatcagataa cgaacttaga ccgcaaaata caatctggcc aaataacaag       120
     caaacatcag tgcaaattat atttggcgcg tcaaaatttt tgtcgaaaac agaatcggga       180
     aaaacaacag cacaggaccc aatcgaaact aagcggaatc actcaaaaca gaacgcgaaa       240
     caaagcactc aagcacaaaa cccgtaagaa aagcactcaa aggcaacaac aacgtaacaa       300
     aatgccncct gttaccaagc gtcagcgtga aaacactgcg actgatctgg gnggagtgag       360
     atcgtcggat gctccgtcgc cccaattgat ccagctagtt gaccagcggt ttgcagagca       420
     ggccnctctt atctcctcta aaatgcagga ggctgaggag cgctttctgc atatgctgga       480
     ggaacgcctg ggaggtctgg ctggccaggt ccaacaattg gcacagcgtg tgcagtacct       540
     cgagcgcgag gttgctgatt tggatataat tcggcagaag ctgggagttc tggagtccaa       600
     ttttgtggcc caagaaaagg caggggtggc cagaagtctg agaatccatg gtgtgccgac       660
     agcggaaggg gaaangtgct tcaacctaca tattacaccc gcgcccgcaa ttaaggaaat       720
     atacagaaca acacggagaa acgcgacagc cactgtggtc gacacagcga tcatggttaa       780
     actggagcgt gtgggagaca aggcagctat tctaagagca acggcggctt accgaagaga       840
     gatgaagcag cagctgactc taaaggactt tggcattgac tctcctgcag tagtctacat       900
     tagggagcag cttccgaaag gtgcttacga ggctttcaga gaggccatgc gcatggaaaa       960
     gaanaagcag cttgttgcag ttttttcgcg gaggggagcg gtgcacataa aagagcgtga      1020
     aaacagtgaa attgttgcaa tcgaaagcta ccaagagctt ttagcttgga agaaaagaga      1080
     gcccataaac actaacagac aagccgaagt ttccccactc caaactaata atcactctnt      1140
     tcgctcttaa tactaatcac tttcctttaa taaacgaaca caacttctcc cttcttattt      1200
     ttctcaatca cacccgtgtt aactctttct ctattttatt aagcttatat tatcatctta      1260
     aaattttcat tatgctgtat attgacaatt acttaatagg acttataact acccaatatg      1320
     acactagcta acgcaaagtc caatgcgaac agtgaaactt tagttcgtat acttgccagt      1380
     cgaaagccag gcctacacgt atgccaaata aatgctcaaa gcctaaagaa aaagattgat      1440
     gaattcagat ttatgtttgt aactctaatg tcgatattat atgtgtgtct gagacatggt      1500
     ttttacctga tctatgtagc gtattaatag attgtgatgg ttataatgta tttcgagtgg      1560
     atcgtcctag tcggggtggt ggtgttgcta tatatgtaaa caaaaaactt aaagtgtcta      1620
     tacattgcca aagcccccct gatagtccaa tggagtacat ttttcttcga attaagaatg      1680
     cacctgacaa gagtaaaatt ttaataggct gtatataccg acctaacaat aatattgact      1740
     tttctcattt gatagacctt atttcgactt ttgcctctgc ttttactgac atcattctga      1800
     ctggtgacct taactgtgac atgttgaaag acaatcgact tttaggtaat atggaatcga      1860
     taggattagc gcttgtcaat tctacaaatc ctactcattt tacaaattcc acaaatacgc      1920
     tcattgattt gttctttgtt aacaatcttg agaaaatttt aaaatatgac caattggcag      1980
     caccagctta ctctaaacat gacctcattt tcctgacgta taatacccac ccagactaca      2040
     ctgaccacta catagaattc cgtgacttta gaaatataga ttacaaccgc ctggcctatg      2100
     atttcgattc aataaactgg aactatattt tttgcttaac gtcattaact gtcaaattca      2160
     acagctagaa acgaacatca actacttata taacagacac gtaccactta aaaagaaaag      2220
     agtaagactg aaagaaaacc catggttcaa tactgacatt aggatggcaa tagcaaaacg      2280
     aaataaggca tttcataaat ggaagagata taaaactgac tctcattaca tcgtctttgc      2340
     taaattaagg aaaaccgtca ccaaacttat tagttcggcc aagagcaact atttgagtag      2400
     taaatttgat aacgcagtga acactaagca gacatggaat catcttaaaa gtctaggtat      2460
     aggaaaacag aagcacgcaa taatagagaa tataaatgtg gaggagttaa acaataagtt      2520
     cctaagcata aatgtacctg aagcaactga aaatatatat ctgaattacc ccccaactca      2580
     tacctgtgat acaagattta attttatatg tgtcagccca agcgatgtat tatcaggcat      2640
     ctgcaggata aaatctaacg ccgtgggact ggatgaccta agccctaaat ttttgagaat      2700
     cctcactccc aaaatcttga catatataac ccatattttt aatacagcaa taatgacatc      2760
     cacttttcct gatgcatgga aagcggctaa aattattcct gtacccaaag gacgaagttg      2820
     tgagttcagg cctatatcga ttttgccatt tttatcgaag gtgtttgaaa atgtaatggc      2880
     tacacaagtg aacaagttta tttctgataa caaattaata accgatctgc aatcaggctt      2940
     taggaaaaac aaaagctgta cctcggcagt cattaaaata tccgaggaaa ttcgagaaca      3000
     cctagataaa ggcgaagtca ctattttaac acttcttgac tatagcaaag cgttcgacac      3060
     tgttgaccac ttgatacttt gcacaaagct tcgttcactg tttttcttct ctgatacggc      3120
     aattaaactt atttcgtctt atttaagtaa tagatgtcaa gctgttgtaa cgtccacttg      3180
     ttcttcgtct tttaaatatg tgaaacgtgg tgtaccccag ggttctgttc ttggtccttt      3240
     gctgtttgtg atatatgtca atgacttagt caatgttgtg tgcgatggtc cactgattca      3300
     cttgtatgct gatgatgtac aaatgtatgt aagtcgtcca ctacatagaa tcaatgaatg      3360
     tattgagttt tgtaatgagc agcttaaaaa aataagtgta tgggcaaaac aaaatggact      3420
     tggtttaaac ccatcaaaat caaaagcatt gataatatac aaaaataata tcgacacttc      3480
     caatataaaa aaactcaatg tcaataattc acctattgaa tatgtgaacc atacggctaa      3540
     cttgggcgtc atatttaata aaacattaac gtggaacaat aacataaatc aagcaactgg      3600
     caagacttat ggtctgctga gaatgttaca tacaacaaaa aactatctac cgacgaacat      3660
     tcggctctta attgccaaaa cctgtcttgt cccaacttta atgtatggtg ttgaaatttt      3720
     tgcaaattgt gattcagtta gtttccgtaa aatcaatgtt tgcttcaaca atattgttcg      3780
     atatgtatac ggtctgaggt tgtatgatca tgtctcgaca ctagcatgta atatattagg      3840
     attaagtata aaagactata tgaactttag aactttaata ttactgcaca agattatcta      3900
     ttcaaaagaa ccagcgtacc tgtacagaaa acttcagttt gcctcatcag aacgaatgaa      3960
     aaacattata gttaaaaggc acagaacatt gacctcagaa aggcaattct ttattcacgc      4020
     tattcgcatt tggaatcaat taccctgttc aataaaactg attgggaatg atacgctctt      4080
     caaaagggcg ctattaagaa tataccaaaa tacagcataa tgaaaatgaa aattaaaaat      4140
     gaaaataaaa a                                                           4151
//
ID   Kiri-1_DK   repbase;    DNA;    INV; 3000 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.07, Created)
DT   28-SEP-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3000
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1345-1345 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           299..2998
FT                 /product="Kiri-1_DK_1p"
FT                 /translation="MHNICATGNFSYILEMEGSVDVSHSHTLLRILAKQRS
FT                 GLKICHINAQSLPKKIEEFRYMFVNSGLDVICVSETWFVQDFRDSLISCDG
FT                 YYVYRGDRVSHGGGVAIFVSKKLKTKFVCKHPDNSQIEYIFLEISNKFASS
FT                 KILIGCIYRPRCDITYNEIISLLGDISLNYADIIVAGDLNSNMLRETHLKN
FT                 EFESIGVHLVNSVFPTHFSRTCSSLLDVFFVSDVKKVYLFDQLIVPSFSKH
FT                 DLIYLTYNFDLQYNDESIVFRDFKNLDYGLLMTEFDKCNWNNIFVSPTVDQ
FT                 QLAQFQNNISYLYENFVPVKTKVIKHSVKSWFNNDIKLAIKSRNDAYQKWK
FT                 RYRTPEHYGRFKLLRKTVTKLIDSAKTNFYSSRFQTTASTSRTWKEIKSLG
FT                 IGRKPAAPEQXVDIEELNTSLSKCNVPEICENNMYLRSVPRNLCDSRFRFV
FT                 CVNQCEVLVNILKIKSDAVGLDDXNPKFIKVLLPKILKYITYIFNTAFTTS
FT                 TFPDRWKIAKIIPVPKANKEYRPISILPYLSKAFENIMASQINSFIHDNAL
FT                 LNNNQSGFRKHRSCTSAILKIANDIREYADNSNVTLLVLLDYSKAFDTVNH
FT                 NVLCAKLVNQFKFSKTAVKLMTSYLQNRRQSVVVSNVSSSFAFTKRGVPQG
FT                 SVLGPLLFTLYVNDLPSMLSSCDVHMYADDVQMYVSRPLNRINECVDICNN
FT                 ELVKISNWAKENGLGLNPSKSKCIIIYKKKLSLNIGPLLLNDSPIEYVERA
FT                 TNLGFIFNNTLNWSDHINTAVGKTYGLLRSLYLVRNFLPLNVRMLLAKSCL
FT                 IPTLFYGIELFANCDSNSQHKLKMAFNSITRFVFNLRRFDHVTRLSYNIFE
FT                 LHLADWIKMRVLVYLQKIIFSKLPIYLYETLRFSTSRRSNIIIQIRH"
XX
SQ   Sequence 3000 BP; 987 A; 560 C; 550 G; 901 T; 2 other;
     ggccatgcga tgcaaaaagc acaaccagct cacaggtgtt tttacacgac gtggtgtggt        60
     gtacgtgaag ctgagcgacg gaggggaacc tcgatatgtg caaagctcac acgagctttc       120
     tgagctgatc aacgatgctg gcggcgccga taagagcaca tttcgagatt aagaagcttc       180
     actcaatttt gtatctccta tgtttacaca taactataat atttattaga tttaaaatta       240
     atgtaggtcg ctatgttttc tttgtgtcct tttcagtatg tttccaatgc cttaatttat       300
     gcataatatc tgtgcaacag gtaatttttc ttatatactt gaaatggaag gcagtgtaga       360
     tgtatcccat agccatacct tgctgcgcat acttgcaaag cagagatcgg gccttaaaat       420
     ttgccacata aacgctcaaa gtctgccgaa aaaaattgag gagttcagat atatgtttgt       480
     caattctggg ttagatgtca tatgcgtatc tgaaacgtgg tttgtacaag atttccgtga       540
     ctcgttaatt tcatgtgatg gttattatgt ttaccgtggg gatcgtgtca gtcatggggg       600
     gggtgtagca atttttgtgt ctaaaaaatt aaagacaaag ttcgtatgta agcatccgga       660
     taatagtcag atagaatata ttttcctaga gataagcaat aaatttgcat caagtaaaat       720
     tcttattgga tgcatttacc gcccacgatg tgatattact tataatgaaa taattagttt       780
     gctaggagat atatcgctaa attatgcaga cattatagta gctggagatc tgaatagcaa       840
     catgctgagg gaaacgcatc ttaaaaatga atttgaatct ataggcgtgc acttggtaaa       900
     ctctgtattt ccaacacatt tcagcagaac ttgcagctct ttgttagatg tcttctttgt       960
     ttctgacgtt aaaaaagtat atctgtttga ccaactcatc gtgccttcgt tctcaaaaca      1020
     tgaccttata tatttgacct acaactttga cctccaatac aatgacgaat cgatagtatt      1080
     tagagacttt aagaaccttg actatggctt gcttatgact gaatttgata agtgcaactg      1140
     gaataatatt ttcgtatctc caacagtaga ccagcaactc gcacagtttc aaaacaacat      1200
     cagctattta tacgaaaact ttgttccggt caaaacaaaa gtgattaaac attccgtcaa      1260
     atcttggttt aataatgaca ttaagctagc aataaaatcc cgaaatgacg cataccaaaa      1320
     gtggaaaagg tataggacgc cagaacatta tggacgattt aaattactga gaaagacggt      1380
     gaccaaacta attgactctg caaagactaa cttttacagc agtagattcc aaacaacagc      1440
     atccacctca cgcacttgga aagaaataaa gtcattagga ataggcagga aaccagcagc      1500
     gccggaacag gntgttgaca tagaggaatt aaacacaagt ctgtcgaaat gcaatgtacc      1560
     tgaaatctgc gaaaacaata tgtacctgag atcagtacct cgaaacctct gtgatagtag      1620
     atttagattt gtttgtgtca atcagtgtga agtgctcgtc aatattctta aaatcaaatc      1680
     agacgcagtt ggacttgacg acatnaatcc taaatttata aaagtattgt taccaaaaat      1740
     cctgaaatac ataacatata tattcaacac ggcctttaca acttccacgt ttccagaccg      1800
     ttggaaaatc gcaaaaatta tccctgttcc gaaggcaaac aaagaatata ggcccatttc      1860
     tattcttccg tatctatcaa aggcctttga gaatataatg gcatctcaaa ttaactcgtt      1920
     catccatgat aacgctttac tgaataataa ccaatcagga tttaggaaac accgcagctg      1980
     cacttcggca attttaaaaa tagcaaatga tatacgagaa tatgctgaca actccaatgt      2040
     gacgcttctt gtactacttg actatagtaa agcctttgac accgttaatc ataatgtcct      2100
     atgtgcaaaa ttagtaaatc agttcaaatt ctcaaaaact gctgtcaaac taatgacatc      2160
     atatttacaa aaccgtcgtc aatctgtcgt agtgtcaaat gtgtcgtctt cttttgcgtt      2220
     tacaaaacgc ggtgtgccgc aaggttctgt acttggtccg cttttgttca ccctttatgt      2280
     aaatgatctt ccctccatgt tgtcaagttg tgatgtccat atgtacgcag atgacgtcca      2340
     aatgtatgtg agccgtcccc taaatagaat aaatgagtgt gtagacatat gtaataatga      2400
     actggtcaaa ataagcaact gggcaaaaga aaacggacta ggactgaatc cgtcaaaatc      2460
     caagtgcata attatttata aaaagaaact cagtcttaac attgggccct tacttttaaa      2520
     tgacagtcct attgaatacg tagaaagagc gaccaatttg ggttttattt ttaataatac      2580
     gctgaactgg agtgatcaca ttaacaccgc ggttgggaaa acgtatggat tgctaaggtc      2640
     gctttatttg gttagaaact ttctacccct aaatgtaaga atgttgcttg cgaaatcttg      2700
     cctgatccca acattattct atgggatcga attatttgct aattgcgact caaacagcca      2760
     gcacaaactt aaaatggcct tcaatagcat tacaagattc gtatttaatt tgcgacgatt      2820
     tgatcacgta actagactat catacaatat atttgaactc cacttggcag attggataaa      2880
     aatgagagtg ctagtttact tacaaaaaat aattttttcc aaattaccaa tttatttgta      2940
     tgaaacactt agattctcca cttcacgaag gtcaaatatt attatacaaa taaggcacag      3000
//
ID   Kiri-1_DPer repbase;    DNA;    INV; 4663 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.08, Created)
DT   22-MAR-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4663
RA   Jurka J. and Kojima K.K.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1660-1660 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           437..1381
FT                 /product="Kiri-1_DPer_1p"
FT                 /translation="MAPVSKRLREKSGTDLKGSKSSEEIPENIQKALDRMF
FT                 AKQAELITANTLKSEGVLQAIEEKFTAMTNQILGMAVDVKKLTERVLQLEK
FT                 AGEVIHEMEQQIIKLKNEVHGMQEIRAQVRDLSTQCVERAKADIACDLRIH
FT                 GIPFEEGEMLKVRFNKMCFALNLTPLPRVKDIFRIRQRTHGTAVDPVIILR
FT                 LESVREKAALLRAVGNYRRESKKLLSLDLMEFDSQAAFYINEQLSKENLAV
FT                 FKEAMKMKKGKALSAVFTRRAIVHVKKHPAGEIFRVDNMHDLQTLRDTSED
FT                 ELAAVDPGAVNRPVETDQNNLFR"
FT   CDS           1505..4297
FT                 /product="Kiri-1_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVHNMNRLPTNSRILIRTLAKQKDGINICHINAQSLY
FT                 GKIDEFRYMFEQSNVDVVCVSETWFMPHLCDNVILCTGFDLYRSDREGNGG
FT                 GVAVYINKKLKSKLICKHPPESAIEYLFIELSASNSSLKLLLGCLYRPHRN
FT                 TIYQQVIDAISDLSVSYTDVIIIGDLNSNILKERHMESAMASLGLHLVNNS
FT                 RPTHFSNTASTLLDLCFVNDKEKIVLYDQLSVPTFSRHDLLFLTYDFNCKK
FT                 IDDDIWYRNFKSIDITKLNDEFNTYDWNIIFDMDDVNSQVEQLRAHITCLY
FT                 EKFVPLRKLKIAQKKNPWFNQCIAHNISLRDKAYNKWKRYRTSVQYQEFKT
FT                 LRKKTNLLILTAKKSFYSVRFQSAILTRRTWRELKDLGIGKRTNNTKIDVD
FT                 IDELNRKFVINGVPEVAYNHYLDNIPNSSCDNNFSFMCASQCDVLESVLKI
FT                 KSNAIGLDEIHPKFLKILLPKILPHVTYICNTVLTKSIFPSTWKLAKITPV
FT                 PKGKNEYRPISILSFLSKVLEQLMSQQIRTFLDNNALLSDKQSGYRRQRSC
FT                 TTAIVNITEDIRLTQDEGNVTLLVLLDFSKAFDTVNHEILLSKLVNFFNFS
FT                 KVAIKLLKSYLTDRRQVVVSGSRISSMMSTARGVPQGSVLGPLLFSLYVND
FT                 LPDVLLNCKSHMYADDVQMYVSRPLSKIDECISVCNSDLLNVSSWAKRNGL
FT                 ALNPDKCKCVIIYKKQLNTMAYPKLEIEGKQINYVDHVENLGLTFNNTLSW
FT                 SSQVVKATGRTYSLLRKLAPTQKYLPDILKLMIAKTYLTPTLFYGIEIFGN
FT                 CDAESQKKLKVTFNNIARYIYNKRRTDHISILARQIFKMDLKTWIGYRTII
FT                 FLHRIIYTRQPSYLYDKLTFASSNRTLNLVTIRYKLANSGKQFLTNAIRLW
FT                 NELPFNIKNISRATQFRDKLEKHLINP"
XX
SQ   Sequence 4663 BP; 1751 A; 752 C; 873 G; 1286 T; 1 other;
     gtcaagcaag caagtcgtgt acaacataca gaggaacaaa atcgtgaaaa actcaagtga        60
     tacactatta tttattaaac agagtgtttt gttcacatca taaactgtgt acgcattgaa       120
     agacaacaat tgacggtgga aataattgaa gataacgcta caaagccaat tttaataaaa       180
     tacagtggaa aaatatttgt tattggttgt gctgtggaag aagaatattt gttattgttc       240
     tgaaccactc tctgtaaacc agcatttgat ctttcggagt cactgagaga ataacgtagc       300
     catacccaat aaaaggttgc aagcagtgca gacagcaaag tgattggcaa cgcattgtaa       360
     agagtcggca aagcagtatt tcaagcagta taaagcagta tttcaagcag caccgtaacg       420
     gaaaaacgtt ttgaacatgg ctccagtttc aaaacgtctg cgagaaaaat ctggaactga       480
     tctcaagggc tcgaagagtt ctgaggaaat accagaaaat attcagaaag ccctggacag       540
     aatgtttgct aagcaggctg aactaatcac ggcaaatacg ttaaagtctg agggtgtatt       600
     gcaggccata gaggaaaagt tcacagctat gaccaatcaa attcttggta tggcagtaga       660
     tgtgaagaaa cttactgaac gtgtcctgca attggaaaag gcgggtgagg taatccacga       720
     aatggagcag caaattatca aactcaaaaa tgaggtacat ggtatgcaag aaatacgtgc       780
     gcaagttaga gatctaagca cacaatgtgt tgagcgcgcc aaagcggaca ttgcgtgtga       840
     tctccgtatt catggaatac cctttgaaga aggtgaaatg ttgaaggtcc gattcaacaa       900
     gatgtgcttt gcccttaacc taacacccct cccaagggtg aaagacatct ttaggatccg       960
     acagagaact cacggaacag ctgttgatcc agtgataatc ctgcgactag agagtgtgag      1020
     agagaaggcg gcgttgttgc gagctgttgg caactatcgc agggaatcga aaaaactgct      1080
     atcactggac ctaatggaat tcgactcgca ggctgcgttt tatattaatg agcagctgtc      1140
     taaagagaat ctggctgttt tcaaagaggc katgaaaatg aaaaaaggaa aagcactatc      1200
     ggctgttttc actcgtcggg cgatcgtgca tgttaagaag catccagctg gagagatttt      1260
     tagagtggat aacatgcatg acctgcaaac attgcgggat acttccgagg atgagcttgc      1320
     agcagttgat ccaggtgcag ttaacaggcc agttgagaca gaccagaata acctttttcg      1380
     ttagtaaaac ttcccttagc catagtaata taatgttgaa gtttaaggtt ttatgttttt      1440
     atatagttat aattgatttg tgtatattgc gtgtgctgct aatatgctat ttagtaactt      1500
     ttaaatggtc cataatatga atagacttcc aacgaatagt aggatattga ttcgtacgct      1560
     ggctaaacaa aaagatggca taaatatttg tcatataaat gctcagagtc tgtatggtaa      1620
     gattgatgag ttccgatata tgtttgaaca atcgaatgtt gatgtagttt gtgtttcgga      1680
     aacgtggttc atgccgcatc tatgtgataa tgttattttg tgtaccggat ttgatctata      1740
     ccgatctgat cgggaaggaa atggtggggg tgttgctgta tacataaaca agaaactcaa      1800
     atccaaatta atatgcaagc accctccaga aagtgcaata gaataccttt ttatagaatt      1860
     atcggcctct aacagttctc ttaaattact attgggctgt ctgtacagac cacaccgcaa      1920
     tacaatctac caacaagtaa ttgatgcaat ttcagaccta tctgtaagct atactgacgt      1980
     aattataatc ggggatctaa acagcaatat actgaaggaa cgacatatgg agtcagcgat      2040
     ggcatcgtta ggcttgcatc tagtcaataa tagtagacca acacatttct caaacactgc      2100
     aagtacatta ttggaccttt gttttgtcaa tgataaagaa aaaatcgttc tttatgatca      2160
     gttatctgtc ccaacatttt ccagacacga cctacttttc ctgacttatg attttaattg      2220
     taaaaagatt gacgacgaca tatggtaccg aaattttaag agcattgaca ttaccaaact      2280
     taatgacgaa ttcaatacat atgactggaa tataatattt gacatggatg atgttaattc      2340
     tcaagtagaa caactacgag ctcacataac atgtctttat gaaaaattcg taccgctgcg      2400
     taaattaaag attgcacaaa agaaaaatcc atggttcaat caatgtattg cacacaatat      2460
     atcattaagg gacaaagcat ataacaaatg gaaacgctac agaacgtctg ttcagtatca      2520
     agaatttaaa actttaagga aaaaaaccaa cctattaata ctgacagcta aaaaatcttt      2580
     ttattctgta aggtttcaaa gtgcaatatt aacaagaagg acatggaggg agctcaaaga      2640
     cttgggaata gggaagagga caaataacac caaaattgat gtagacatag atgaattaaa      2700
     tagaaaattt gtgataaacg gggtacctga agtagcatat aatcattatc ttgacaatat      2760
     accgaatagt tcctgtgata ataactttag cttcatgtgt gccagtcagt gtgatgtcct      2820
     tgaatctgtg cttaaaatta agtcaaatgc aatcggactg gatgaaatac atccaaaatt      2880
     tctaaaaatc ttacttccga aaatattacc acatgtgact tatatttgca atactgtctt      2940
     aacaaaatca atatttccaa gtacatggaa gcttgcgaaa ataacaccgg tccctaaagg      3000
     aaaaaatgaa tatagaccta tatcaattct atcgtttttg tcaaaagtcc ttgaacaatt      3060
     aatgtcacaa caaattcgaa cttttctaga taacaatgca ctactaagtg acaaacagtc      3120
     aggttacaga agacaaagaa gctgtactac ggcaatagta aatataacgg aagacattag      3180
     attaacacaa gatgaaggaa atgtgacgct attagtacta cttgacttca gtaaagcatt      3240
     tgacacggtt aaccacgaaa tcttattaag taaattagtt aactttttca attttagtaa      3300
     ggtagctata aagctattaa aatcgtattt aacggataga agacaggtag tggtaagtgg      3360
     aagtagaatt tcttcaatga tgagcactgc acgtggtgtg cctcaaggtt cagttcttgg      3420
     gccgcttttg ttctcattat atgtgaatga cctgccagac gtcctgttaa attgtaaaag      3480
     tcatatgtat gcggatgacg tccaaatgta tgttagtcgt ccattgagta aaattgatga      3540
     gtgtataagt gtgtgtaaca gtgatttgct caatgtgagt agctgggcga agcgtaatgg      3600
     tctggcactt aatccagata aatgtaaatg tgtaattata tacaagaagc aactaaatac      3660
     gatggcctat ccaaaacttg aaatcgaagg aaaacaaatt aattacgtag atcatgtgga      3720
     aaacttagga ttaacattta acaatacgct ttcttggagt agccaagtag tgaaagctac      3780
     tggtagaaca tatagtctac taagaaaact cgcaccaaca caaaaatacc tgccagatat      3840
     actcaaacta atgatagcta agacatattt gacacccacc ttattctatg gtattgaaat      3900
     atttggaaat tgtgacgctg aatctcaaaa aaaactaaaa gtaacattta acaacattgc      3960
     ccgctacata tataataaga gacgaaccga tcatatctca atcttagcaa gacaaatatt      4020
     caaaatggat ttaaagacat ggatagggta cagaacaatt atttttctac atcgaataat      4080
     ctataccaga cagccgagct acttatatga taaattaacc tttgcttcat caaatagaac      4140
     gttgaatctg gtaaccataa ggtacaaact tgccaattca ggaaaacaat ttttaacaaa      4200
     tgctattcgg ttatggaatg agttaccttt caatattaaa aatattagta gagcaacgca      4260
     atttagggat aaactagaaa aacacttgat aaacccataa aaaaaaaaaa aataaataaa      4320
     taaataaata aataaataaa taagtaaata aaaataaata ataaaaataa taataataat      4380
     aaaaaataat aataaaaaaa aaaataaata aataaataaa aaaaaaataa aataggaaaa      4440
     aaacaaaaaa aaaaaaaatt agaattagta ttagtattaa taatacaaat attagtcata      4500
     ataataaaaa tattagtcat accaaaaatg ttagaataag aaaatcattc tgcttaaagc      4560
     atacaactac atacatatgt gaactccatg tgactagcgc attaacataa agtaggaata      4620
     ctgtcgcgtt aggaatatat atacaaataa atacaaatac aaa                        4663
//
ID   Kiri-1_DRh  repbase;    DNA;    INV; 4450 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.08, Created)
DT   03-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4450
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1688-1688 (2012).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           413..1075
FT                 /product="Kiri-1_DRh_1p"
FT                 /translation="MPQPPAKRTRGKTSTELSSPTDGLWDKISQKFAEQTD
FT                 FFKNHMAELENRITTKITVTLDAINSDMSEIMKRVERLESEVAEIRXLRDQ
FT                 VNRLKSASELQXNXRVACDLRLHGVPFNQGEDVRALFHTLCFXLKVTPTPR
FT                 IRDIFRMKPPRNGRSIVDPXIMIKFDRLEDKANLMRTVGALRRETKSQLSL
FT                 SYVGIDSPTPMYLNEQLTKTNYXIFRAAMST"
FT   CDS           1787..4222
FT                 /product="Kiri-1_DRh_2p"
FT                 /translation="NILIGCAYRPHRTTCYSDLLANLTALTWTYKNVALTG
FT                 DFNSDLLTDTSLCAELLSLGLQPANVTHPTHXTKSSPTLLDVFFVDDASKI
FT                 LLYDQVSVPVFSRHDLIYLTYSIDVSAEEYSITYRALKDINYTLLDSECNS
FT                 YNWQALYTIPNVDLQLEFFNNNIELLYNKYVPVKTKKIRPNGNPWISMEIK
FT                 NTINACDRAYRKWKRYKTDYLHKQYSSLRIKVNKSCWLAKRKFYQQKFNNV
FT                 SSGKEFWKNIKSIGVGKQRQETACHINANELNNKFVKSQPLVPDQTNNPYL
FT                 NTLPNNNCDTSFSFVCVSQCDVLQSMLNIKSSAMGLDNIHPKFLLILVPKL
FT                 LPYITHIFNTAITSSTFPTCWKTAKVLPIPKIKGEYRPISILSFLSKAFER
FT                 LVSTQINLYLHDNSLLNXRQHGFRKTRSCMTAILKFSEDIRMKTDDRQVTF
FT                 LTPLDYSKAFDTVDHFILCTKLEKLYNFSNPATSLVRTYLMGRSQCVVTES
FT                 ETSDFLFTKRGVPQGSVLGPLLFSIYVNDLPNVLSNCEVQMYADDMQMYVS
FT                 RPYSCISECIDVSNSELKLVSNWAMNNGLQMNPNGLQINPKKSKCLIIFKK
FT                 EINAPLQRLKVDTDEIEYVNRANNLGIVFNSTLSWSNHINYIVGKTYCQLR
FT                 QLKLIQSILPTHSKMVLAKSIIIPSLLYCIEIFGKCDSISRNKLTVAYNNI
FT                 ARFIFNIKPHDSISSHAKQIFGLDFSTLVEFRTLILLHKIVTTKEPNYLFS
FT                 FLNFAQSARTNNIIPTRINYSSSENHFFAWAVKLWNNLPHSLKNTRSARQF
FT                 RKELLLMLKK"
XX
SQ   Sequence 4450 BP; 1469 A; 887 C; 791 G; 1285 T; 18 other;
     cacgtgctat acctcaagcc ccgtgttnac tcnttttttt ctgagttcaa gcttcaacaa        60
     atcgtcccgg agcctaagtc gtctgcacat gctgatgttt ttcccgtatc gttgctgatt       120
     ttggtaaaat aaaactatat tcttcgcgtc gcaaaagcca ctcacatccc cgaagaccac       180
     tcaaatcgtc gcaaacacgg tggaaaacgg caanaaggcg gaaaactgtc ttgagccaga       240
     aagcgtgtca aaagtaagcc aaaaaaacta gaggtggacc aggtcagctg ttgtcaccat       300
     tcacacggca cgatcacacc accgcagaag tgtgactgtt aaaagagttc gtgttgtagc       360
     agctagctta tttttcgccg aaccattttt tttaaattct aactgcctaa acatgccaca       420
     accgccagca aagagaacca ggggaaaaac ttccactgag ttaagttctc caacagatgg       480
     gctttgggat aaaataagcc agaagtttgc tgagcaaact gatttcttta aaaaccatat       540
     ggctgaactg gagaatcgca ttacgaccaa aattactgtt acgctggacg ctattaacag       600
     tgatatgtcg gaaatcatga agagagttga gcgtttggag agtgaggttg cggaaatccg       660
     ggncttgcga gaccaagtca atcgcctaaa gtcggcatct gagctgcagn aaaatnaaag       720
     ggtagcttgt gatctccgcc ttcatggggt accatttaat caaggcgaag atgtgagggc       780
     attgtttcac accctttgct ttaancttaa ggttaccccc accccaagaa ttcgagatat       840
     attccggatg aaacccccta gaaacggtcg ntctatagtt gacccaatna taatgatcaa       900
     gtttgataga cttgaggaca aggctaacct aatgcgtacc gtgggtgcac tacggcgtga       960
     aacgaaaagc cagctttctc taagttatgt tggcatagat tcgcccactc caatgtatct      1020
     gaacgaacag ctgactaaaa ccaactatga natttttaga gcagccatga gcacatgaag      1080
     cgtcagaagg ccctatcggc tgtcttcact cgtcgagcaa tggtccacgt aaagaagacg      1140
     ggcagtgatc aggtcctatg cattgagaac atgagggccc ttaccgacat taatcctgat      1200
     cggcatgaga cacctgctga aactgactct aggaaggatg gagcggcacc taatttattt      1260
     cgttaatgca gttcatctaa atgttctata ngttcatttt aaggtnttat tagttctatt      1320
     tatatttact ttcaattgca atttgtactt ttgttatatt atgtgtggta ctgtgtgtgt      1380
     gttccaggtc ttagcacttc aaagtactta tacttctttt acttatgtct gcaatngagc      1440
     ctantcaaaa ctttaacagc catgcattga tcagaattct ttgtaaacaa actactggtc      1500
     tgaaaatatg tcacataaat gcgcaaagtc tgactaataa agtcgatgag ttcaggtacc      1560
     tattcgaaaa ttcaaaagtc gatgtcatct gtgtttccga aacttggttc acgtccgata      1620
     tcagtagttc atatcttcct tgtgctgatt acaatctgtt tcgttctgaa agagtaaatc      1680
     atgccggcgg tgttgctatt tttgtccgta aacaatttaa atgcagcaag agctagagag      1740
     tgcaatagaa tacttatttg tagaagtacg aggaacaaat tcttaaaaca ttcttattgg      1800
     ctgtgcctat agaccacatc gtactacttg ctactcagat ctacttgcca atctgactgc      1860
     cctaacatgg acatacaaaa atgttgcatt aaccggtgat ttcaacagtg accttttaac      1920
     tgatactagt ctctgcgcag aactattatc actcggactt cagccagcaa atgtcacaca      1980
     ccctacccat tncacaaaat cctcaccaac cctactngat gtatttttcg tagatgacgc      2040
     aagtaaaatc cttttatatg accaggtatc tgtaccagtt ttctcgcggc atgatcttat      2100
     ctacttgacg tatagcatag acgtaagcgc tgaggaatac tccataacct atcgggcctt      2160
     aaaagatata aactatacgc tactggactc agagtgtaac tcttacaact ggcaagcatt      2220
     gtatacaatt cccaatgttg atttacagtt agagttcttt aacaacaata tcgagcttct      2280
     atacaacaaa tatgtaccag tcaaaacaaa aaaaattagg ccaaatggga acccatggat      2340
     tagcatggaa atcaaaaata caattaatgc gtgtgatagg gcctatagaa agtggaaacg      2400
     ctataaaaca gattacttac acaagcagta cagttccttg agaataaagg tcaataagtc      2460
     atgctggtta gctaaaagga aattctatca acagaaattc aataatgtgt catctggtaa      2520
     agaattctgg aaaaacataa aaagtattgg agtaggaaaa caacgacaag agacagcttg      2580
     ccatattaat gctaatgaat taaataataa atttgtgaaa tctcaacctt tagtacctga      2640
     tcaaactaac aacccgtacc tgaacacatt gccaaacaac aactgtgata ctagctttag      2700
     ttttgtttgt gtgagtcagt gtgatgtcct acagtccatg ttaaatataa aatcgagtgc      2760
     aatgggtctc gataatatac atccaaaatt tttactaatc cttgtcccca agctacttcc      2820
     atatataaca cacattttta atacagcaat aacatcttct acatttccaa catgctggaa      2880
     gacagccaaa gtacttccta taccaaaaat aaagggtgaa tatagaccga tatccatact      2940
     ttcctttcta tccaaagcat ttgagcgcct agtctccaca caaattaatt tgtatcttca      3000
     cgataattca ctgttgaatn cacgacaaca tggctttcgg aaaacgcgta gttgtatgac      3060
     agcaatttta aaattttcag aggatattcg catgaaaacg gatgacaggc aagttacatt      3120
     tctaacnccg ctagactata gcaaggcttt cgacactgtc gatcatttta ttctgtgtac      3180
     taagttagaa aaactatata atttttcaaa cccagctaca agcttggtaa gaacatacct      3240
     aatgggccga tctcaatgtg ttgtaacgga gtctgagacc tcagactttt tatttactaa      3300
     gcgtggtgtc ccccaagggt cggtccttgg accattactg ttttcgatat atgtgaacga      3360
     tcttccaaat gtcttgtcta attgtgaagt ccagatgtat gctgacgata tgcaaatgta      3420
     tgtgagtcgt ccatatagct gtatatctga atgtattgat gtcagtaata gtgaacttaa      3480
     actagttagc aattgggcaa tgaataacgg tcttcaaatg aatccaaacg gtcttcaaat      3540
     aaatccaaaa aaatccaaat gtttgataat ttttaaaaaa gaaataaacg caccattgca      3600
     aaggctcaag gttgatactg atgagattga atacgtaaat cgagctaaca acctcggaat      3660
     tgtgttcaac agcactcttt cgtggtccaa tcatattaac tatatagttg gtaagacgta      3720
     ttgtcaacta cgtcaattaa aactgatcca gagtatttta ccaacccata gtaaaatggt      3780
     attagcaaag tcgattataa tcccttcact attatactgc attgaaatat ttggaaaatg      3840
     tgactcaata agtaggaata aattaaccgt agcatacaac aatatagcaa gatttatttt      3900
     caatattaaa ccacacgatt caatttcaag tcatgctaaa caaatctttg gactagactt      3960
     ttccacatta gttgaattta ggacactgat tctccttcac aaaatagtca cgaccaagga      4020
     accaaattac ttgttttcgt ttctcaactt tgcacaatca gccagaacga ataatataat      4080
     tcccacaaga atcaactatt cctcaagtga aaatcacttc tttgcatggg ctgttaagct      4140
     ttggaataat ttaccacaca gtttaaagaa tacaagaagt gctagacagt ttcggaaaga      4200
     attattatta atgttaaaaa aataactaac ccacacccac aaccacacac aactaattat      4260
     aaatccaaga actaactata gataagaatt caaaattgta ctacggataa taatcaaaac      4320
     ttgcaaatat gtttaagtaa ttctgtaaaa ctttctgtaa gattgtaaac tttgttttgt      4380
     gactagtgct ttacttttaa gttaaattgt taactttagc gctaggaaga taaataaata      4440
     ataataataa                                                             4450
//
ID   Kiri-1_DSuz repbase;    DNA;    INV; 4482 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4482
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 618-618 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1254
FT                 /product="Kiri-1_DSuz_1p"
FT                 /translation="MSASKRLRSEKSSTEIKVARTSDTQLLQQIDAKFTSQ
FT                 RKEINMELLQLIDDKFAEQRESLGREYRESEARFLNTLQAKFDAMNTEIHN
FT                 LTKRVRELETEAKEVNTLKQQVCELDAQLAAKCNAQEVADVACNLRWHGVP
FT                 HVEGENLNTLFNRLCFSLHLTPPPRVRSIFRVRPRQRNSLVDPIIIIKMDH
FT                 VREKAVLLRAIGVHRQTTKSQLSLQLIGFDSPAFIYLNEQLTKTNYEIFKH
FT                 AMRLKKQKRVAAVFTRRGDVFVKPIDGGEAYYVQSSNELSDLSSDVGEINS
FT                 SRDAALENNSFRN"
FT   CDS           1422..4229
FT                 /product="Kiri-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEENLNNSTANSRALLCILAKQRPGLKICHINAQSLP
FT                 KKIEEFRYMFVNSEIDVICVSETWFVQSLCDVLISCDGYNVYRSDRVSHGG
FT                 GVAIYVNKKLKAKIICQHTINSAIEYIFLEIQNPIIEKNLLIGCIYRPHCN
FT                 TNYDDLINILTDITVNFTDVILAGDLNSDILRESHLTSNMESLGLKPVNLS
FT                 FPTHFSRTRNTLLDLFFVSDVNKICLYDQLIVPSFSKHDLIYLTYNFDLNY
FT                 TDHTIFYRDFNNINYILLNEAFDLCVWNNIYSLPTVDRQLKLLQHNISHLY
FT                 DSFVPVKSKTIRPSEKPWFTNNIKLAIIKRNEAYQKWKRYKTPQHHSMFVS
FT                 LRKTVTKLIDSAKSNFFSQKFKNSTSSSQTWKQIKTLGIGKQKTSQELDVD
FT                 IDELNLKLAECQVPEVTTNTYLNSVPENICDTRFRFMCVDQCDVLDNILKI
FT                 KSNAIGPDDIHPKFIKILLPKLIPYLTHTFNTALTTSTFPDCWKTAKIIPI
FT                 PKSNKEYRPISILPYLSKVFENIVASQINNFISVNSLLNDHQSGFRKNRSC
FT                 TSAILKITEDIRQQTDNSYVTFLLLLDYSKAFDTVNHDILCSKLKNLYFFS
FT                 NTAVKLLCSYLKNRRQYVVSSNICSSFAYLKRGVPQGSVLGPLLFTLYIND
FT                 LPSVLSKCNVHLYADDVQMYVSRPLNRISECLDICRMELGRVNEWAKNNGL
FT                 AINPLKSKCLIIFKKKLCNIELFPLMINKTPIEYVETANNLGITFNRTLNW
FT                 NDHVNKAVGKTYGLIRSLSLVKCSLPVSVRLLIAKSCIIPTLFYGLEIYAN
FT                 CDVASQHKLKIAYNSIARFIFNLHRSDHVTQFSYKIFDISLADYMKSRTII
FT                 FLHKVIYTREPSYLFEKLQFSRSTRTKNIICIRHRFLLSNRQFFINAIRTW
FT                 NELPNYIKETRSATLFKTKLLSHLKNSSSSLL"
XX
SQ   Sequence 4482 BP; 1532 A; 870 C; 765 G; 1315 T; 0 other;
     agtagcaaaa ggaaagtcgc gtttttgcag agctcccgaa acagtcgctc aaaaagtcta        60
     taaaatctag aaacattaac aatttctatc ggactataag ccgcctgtgg tctatgatca       120
     tttagcgttc aaatcgtgcg tgtaatctcc atacttttgt ttaaaaacac ttaaaacaca       180
     tttcttttgg tcgaaagtgt aaagataaaa gaaaggaaac attcacacac atatactgca       240
     gtgcacaaag actgaaaact accgaaaaca cactcaaatc aataacttat acaattacac       300
     aaatcactca aactcaaaat tgatcaaaac aacaacagta tgagtgcatc aaagcgacta       360
     aggagtgaaa agtcgagtac cgaaatcaag gtagctcgca cgtcggacac acaattgctg       420
     caacaaattg atgcaaaatt cacgagtcaa cggaaggaaa tcaacatgga actgttgcag       480
     ctgatcgacg ataaatttgc ggagcaaagg gagtcactgg gtagagagta tcgagagagc       540
     gaggcccgct ttctcaacac tctacaggct aaattcgatg caatgaacac cgaaatacac       600
     aaccttacga aacgagtgcg agagctggaa accgaggcaa aagaggtgaa tacactgaaa       660
     caacaagtgt gtgaactgga tgctcaactg gcagcaaagt gcaatgcaca ggaggtcgcg       720
     gatgttgcat gcaacctgcg ctggcatggt gtaccgcacg tcgagggcga aaatttaaac       780
     acccttttca atcgactttg tttctcacta cacctgaccc ctcctccgcg agttaggtct       840
     atttttcgag tccgaccgcg ccaaagaaac tcacttgttg acccaataat aataataaaa       900
     atggatcacg tgcgcgaaaa agctgtgctg ctgcgggcga ttggagtgca ccgacaaaca       960
     accaaatcgc agctgagctt acagctgatc ggttttgact cgccggcatt tatatactta      1020
     aacgaacaat taacgaaaac aaattacgaa atttttaagc atgccatgcg cctcaaaaaa      1080
     caaaagcgcg tagcggccgt ctttactcgc cgtggagacg tatttgttaa gcctatagac      1140
     ggaggagagg cttactacgt gcaaagctcc aatgagcttt ctgatctgag tagtgatgtg      1200
     ggcgaaatca actcaagcag agatgccgct ttagagaata attcatttcg taattaaaat      1260
     attttttatc tctatattag gatttccaat tagtttaata tctttatctc ttgttattca      1320
     tatgtttagg atcagtcgca ttgttaattt agtagtctgc ctaatttttt gtctggtgtg      1380
     cagtccttgt ttttttattt tgaaatttaa aactattcac aatggaagaa aaccttaata      1440
     attcaacagc aaatagtcgt gcccttctgt gcatcctggc aaagcagaga cctggtctca      1500
     agatttgtca tataaatgcc caaagcctgc caaagaaaat tgaagagttt aggtacatgt      1560
     ttgtaaattc ggaaattgat gttatatgcg tgtctgaaac atggtttgtc cagagtctat      1620
     gtgatgtgct aatatcgtgt gatggatata atgtgtaccg ttctgatcgt gttagtcatg      1680
     ggggaggagt tgctatatat gtaaacaaaa aattaaaagc caaaattatt tgccaacaca      1740
     caataaacag tgcaatagaa tatatttttc ttgaaataca aaacccgatt attgagaaaa      1800
     atctgttaat tggctgcatt tatcgtccgc attgcaacac aaactatgat gatttaatca      1860
     atattctgac agacattaca gtaaacttca ctgatgtaat ccttgcaggc gatcttaata      1920
     gtgatattct gagggaatct caccttacca gcaacatgga atcgctaggt ctgaaaccag      1980
     tgaatctttc atttccaacc cacttcagca gaacacgtaa cacattatta gatttgtttt      2040
     ttgtgagtga tgttaataaa atatgtttgt atgatcagct aatcgttccg tccttttcaa      2100
     aacatgacct tatatacctg acctataact ttgacctaaa ctacacggac catacaatat      2160
     tttatcgtga ttttaataat attaattaca tactgttgaa cgaagcattt gacctgtgtg      2220
     tatggaacaa tatttacagt cttccaacag tcgatcgtca acttaaactt ctacaacata      2280
     atattagcca cttatacgat agttttgtcc cagttaaaag taaaacaatt cgaccgtccg      2340
     aaaaaccatg gtttactaat aatataaaat tggcaattat aaaacgaaat gaagcatacc      2400
     agaagtggaa aagatacaaa acaccgcaac accacagcat gtttgtatct ctgagaaaaa      2460
     cggttaccaa actaatcgac tctgcaaaat caaacttttt tagccaaaaa tttaaaaact      2520
     caacctcttc gagtcaaaca tggaaacaga ttaaaactct agggataggt aaacaaaaga      2580
     catcacagga actagatgtt gacatagatg aactcaacct taaattagca gaatgccaag      2640
     ttccagaggt cacaaccaac acgtacctga attcagtacc tgaaaacatc tgtgatacta      2700
     ggtttagatt tatgtgtgtt gaccaatgtg atgttttaga taatattctt aaaattaagt      2760
     ctaacgcaat tggacctgac gatattcatc ctaaatttat aaaaattcta cttcctaaac      2820
     ttatcccata ccttacgcac acatttaaca cggctcttac cacgtctacg ttccctgatt      2880
     gctggaaaac cgccaaaatt atcccaatac caaaatcaaa caaagaatat cggccgatat      2940
     ctattcttcc gtacctctcg aaggtgtttg aaaatattgt cgcatcacaa ataaataatt      3000
     ttatatctgt caatagcctc ttaaatgacc atcaatctgg atttagaaaa aatcgtagct      3060
     gcacttcagc catcttaaaa ataaccgaag atatacgtca acagacggac aactcgtatg      3120
     tcaccttctt actattgctg gactacagca aagcgttcga cacagtaaat catgatatcc      3180
     tgtgctcaaa actcaaaaat ttgtatttct tctccaatac tgccgtcaaa cttttgtgtt      3240
     cgtatcttaa aaatcgtcgt caatatgttg tatcgtcaaa tatttgttct tcgtttgcct      3300
     atctgaagcg tggtgtaccc cagggttcgg ttcttggacc actattattc acactttata      3360
     taaatgatct tccttctgtg ctgtcgaaat gtaatgtcca tttatatgct gatgatgttc      3420
     agatgtatgt tagtcgtccc ttaaacagaa ttagtgagtg tttagatatt tgtagaatgg      3480
     agcttggaag agtaaatgaa tgggcaaaaa acaacggtct agccatcaat ccattgaaat      3540
     caaagtgctt aatcattttt aagaagaaat tatgcaatat tgaactgttc cccttgatga      3600
     ttaacaaaac accaattgag tacgtggaaa ccgccaataa tttgggtatc acatttaata      3660
     gaaccttgaa ctggaatgac cacgtaaaca aagctgtagg caaaacatac ggactaataa      3720
     gatccttgtc actagttaaa tgttccttac ctgttagtgt gcgtcttcta attgccaagt      3780
     cttgtataat acccacactc ttttatggtc tagagatcta tgcaaattgt gatgtagcaa      3840
     gtcaacataa gctgaaaata gcatacaaca gtattgcgcg ttttatattt aatttgcata      3900
     gatctgacca tgtaactcaa ttttcttaca agatatttga tataagcttg gcagattata      3960
     tgaaaagtag aacaataatc tttttacaca aagttatata caccagggag ccatcgtact      4020
     tatttgaaaa attacaattc tccagatcta caagaacaaa gaatattatc tgcatccgac      4080
     acaggtttct gctttcaaat agacaatttt ttataaatgc gattagaacg tggaacgagc      4140
     ttcccaacta cataaaagaa actaggagcg caacactatt taagacaaaa cttctctcac      4200
     acctaaaaaa tagcagttct agtctactat aaggtatatt atcctatttt aacattgcga      4260
     cttatcccca aaaccttttc cttagttttt taatttcgat ttaacttcat ttctatttat      4320
     ctaaatgttc aacaataaat gtaacaatgt atgtcattag atttaagaac caattttgtc      4380
     caaatttaaa tatgtttacc agttgtgact agcgctgtaa tttataagtt ttaaaacttg      4440
     tagcgttagg aagcctaaaa caataaataa taataataat aa                         4482
//
ID   Kiri-1_DTa  repbase;    DNA;    INV; 3573 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3573
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1708-1708 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           117..596
FT                 /product="Kiri-1_DTa_1p"
FT                 /translation="MPDWWXNASRRRXLRSRAICAGMGSHRSKAKIXRRFF
FT                 TSXXSRCIFXVRPRQXGQSFVDXIIIXXLENVXGKVELLRAIGAYKKXXLS
FT                 LQIGFESXALMYMNEQLTKYNYEQAAYSCFYTPWSGPREAERRRGPRYIQS
FT                 SXELSEPTNDVGGAHRNSFRE"
FT   CDS           1073..3391
FT                 /product="Kiri-1_DTa_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MLRETHLKSEMESLGMKLVNSVFPTHFTKTCSSLLDV
FT                 FFVNDXAKVYVYDQLIVPSFSKHDLIYLTYNFDLQHTAESIVFRDFKNIDY
FT                 DLLMAELDICNWNNIFISPTVDQQLTELQNNISYLYDLFVPVKSKVIVKSK
FT                 VIKHSAKPWFNNEIKLAIKARNDAYQKWKRYRTPQHYGRFKLLRQTVTKLI
FT                 ESAKIGFCSRRFKNSTSTSQTWRNIKSLGIGKQKATPVQDVDVEELNLRLS
FT                 ECNVPEICNNNMYLRSVPENVCDNRFRFVCVNQCEVLFNILKIKSDAVGLD
FT                 DINPKFLKLLLHKIIQYITHIFNTAITTSTFPDSWKIAKIVPVRKANNEYR
FT                 PISILPYLSKAFENIMAAQINLFMQENDLLNHMQSGFRKNRSCTSAIIKIS
FT                 NDIRDYADKSXVTFLVLLDYSKAFDTVNHDVLCAKLKNQFSFSKTAVKLMS
FT                 SYLLNRRQSVVISNVSSSFVSLKRGVPQGSVLGPLLFTLYVNDLPSALSNC
FT                 NVHMYADDVQMYVSRPLRRIDECVDICNSELVQISNWAKDNGLGLNPAKSK
FT                 CLIIYKKKISINSIQPLVLNSIPIEYVEKATNLGFVFNSTLTWSDHINAAV
FT                 GKTYGLLRAIYQVRNYLPTNIRLLLAKSCLIPALFYGIEVFANSDSISQHK
FT                 IKVAYNSIARFVFNLHRFDHVTGFAYKIFELHSADWMKMRVLVYLHKIIIT
FT                 KEPSYLFETLRFANSLRSKTIIQIRHRSLLSDRQFFIYAIRSWNQLPNXIQ
FT                 NISSAAQFKAKLISHFQAANMT"
XX
SQ   Sequence 3573 BP; 1168 A; 681 C; 661 G; 1033 T; 30 other;
     ggtawaaaag gwagacgagc tgcaacagcg ggtcactgag ttggctggcc aactggcakm        60
     wamwggccct cctagtggcc tggtagatga gctgaagcag caagttgtcg acttggatgc       120
     cagactggtg gcmaaatgca tcgcggagga ggakgctgmg gtcgcgagca atttgcgctg       180
     gcatggggtc scacaggtcg aaggcgaaaa tttkaagacg ctttttcaca agctstkttt       240
     ctcgctgcat ctttakggta cgtccgcgac aatsaggtca atcatttgta gaccmaataa       300
     tmattktaaa wctggaaaac gtamgcggca aggtggagct actgagagca attggggcat       360
     acaaaaaagk tmaacttagc ctacagatag ggtttgagtc gmcagcactg atgtacatga       420
     acgaacagct gaccaaatac aattatgagc aagcagctta cagctgtttt tacacgccgt       480
     ggagtggtcc acgtgaagct gagcgaagga ggggacctcg atatattcaa agctckckcg       540
     agctttctga gccgaccaac gatgtgggcg gcgcgcatag gaactcattt cgagaataat       600
     cagtttctct aattttttat gttaaacctt cgatcatagt ctttgtattt gttagtttta       660
     aaattaatgt aggtcgcttt gtttacttta tgttctttgc agcttcttat caatgtttta       720
     ttttatacat aatgcgtgcg caactgacaa ttttgcttaa acagacaact tagaagtctc       780
     aaatagccat gcccttttgc gatcctcacc aaacagagat ctggccttaa agttcgtagc       840
     aatatatgtt tgtaaacaat taaagtgcaa gtttatatgt aagcatcccg atagtagccc       900
     aatagagtac ttgtttcttg aaattactag tagatacaca ccaaagaaaa tccttatcgg       960
     atgcatctac cgcccacgtt gcaacattaa ctatagtgac gttattaaat cgttaacaga      1020
     tatatcttta agttatgcgg acattttgtt agctggagat cttaatagta acatgttgcg      1080
     ggaaacacat cttaaaagcg aaatggaatc attaggtatg aagctagtaa actctgtgtt      1140
     tccaacacat ttcaccaaaa catgcagttc tttattagat gttttctttg ttaatgacmt      1200
     tgcaaaagta tatgtatatg atcaacttat cgtcccatcg ttctcaaaac atgatctcat      1260
     atatctgacc tacaactttg acctgcaaca cactgccgaa tcaatagtat ttagagactt      1320
     taagaatatt gactatgacc tgcttatggc cgaacttgac atttgcaact ggaataacat      1380
     tttcatatcc ccaacggtag accagcagct cacagagctt caaaacaaca taagctacct      1440
     gtatgattta tttgttccag tcaaaagcaa agtgatagtc aaaagcaaag tgataaaaca      1500
     ctcagctaaa ccgtggttta ataatgagat taagttggca ataaaagckc ggaatgacgc      1560
     gtatcaaaag tggaaaaggt acaggactcc acaacattac ggccgcttta agttattaag      1620
     acagacagtg actaaattaa ttgaatccgc gaagataggc ttttgtagtc gtaggtttaa      1680
     aaactcaaca tctacaagtc aaacatggag aaatattaaa tcattaggaa taggcaaaca      1740
     aaaagcaaca ccagttcagg atgttgacgt agaggaactg aacctaagac tgtcggaatg      1800
     caatgtacct gaaatctgca ataacaatat gtacctgaga tcagtacctg aaaatgtctg      1860
     tgataatagg tttagatttg tgtgtgtcaa tcaatgtgaa gtgcttttca acatccttaa      1920
     aatcaaatca gatgcagttg gactggacga tatcaaccct aaatttttaa aattattgct      1980
     tcacaaaatc atacaataca taacacacat ttttaatact gccataacaa catctacatt      2040
     tccagacagt tggaaaatcg ccaaaatagt ccccgtccga aaggcaaaca atgaatacag      2100
     gcccatctct atccttccct atttgtccaa ggcctttgaa aacataatgg cagcccaaat      2160
     taatttgttt atgcaagaaa atgatttact aaaccatatg caatccgggt tccggaaaaa      2220
     tcgtagttgc acttcagcta tcataaaaat ttcaaatgat atacgtgact atgctgacaa      2280
     atcctwtgtg accttccttg tactccttga ctatagtaaa gcctttgaca ctgttaatca      2340
     tgatgttcta tgtgcaaaat taaaaaatca gttcagtttt tcaaaaactg ccgtcaaact      2400
     tatgtcctca tatctactaa atcgtcgtca gtctgttgta atctcaaatg tctcgtcttc      2460
     ttttgtatct ctaaaacgtg gcgtgcctca aggttctgtt cttggtccgt tgctgtttac      2520
     tctttatgtg aatgatcttc cttctgcgtt atcaaattgt aatgtccata tgtacgcaga      2580
     cgatgtccaa atgtatgtga gtcgtcccct acgtagaata gatgagtgtg tagatatatg      2640
     taatagtgaa ctggtccaaa taagcaactg ggcaaaagat aacgggctag gtcttaatcc      2700
     ggcaaaatcc aagtgtctca taatttacaa aaagaaaatt agcattaact ccatccagcc      2760
     cttagtttta aacagcatac ctattgaata cgttgaaaaa gccacaaact tgggctttgt      2820
     ttttaacagt acgctgacct ggagtgatca cattaacgca gctgtaggga aaacgtatgg      2880
     attactcaga gcaatttacc aggttagaaa ttatttaccc acaaacatac gtctgttgct      2940
     tgccaaatcg tgtctgatcc cagcactttt ttatgggatt gaagtttttg caaacagtga      3000
     ttcaatcagc cagcacaaaa ttaaagtggc ctataatagc attgcgagat tcgtattcaa      3060
     tctgcatcga tttgatcacg tcacaggatt tgcttacaaa atatttgaac tgcactcggc      3120
     agactggatg aaaatgagag tgttagtata cctacataaa ataattatta ctaaagaacc      3180
     aagctacctc tttgaaacgc ttagatttgc caattcgctc agatcaaaaa ctatcattca      3240
     aataaggcat agatccctgc tttctgaccg gcaattcttt atttatgcaa taaggtcatg      3300
     gaaccaacta ccaaactkta tacaaaatat tagtagtgca gcgcagttta aggcaaaatt      3360
     aatttctcat ttccaagcag ctaacatgac ataaaataaa catagcgacc ctagctttag      3420
     atttaatata agtataatta aaatttgtga attagagtta agtcaaaatt attgacacaa      3480
     aattaacttg tcctgtgtga ctagcgcatt aaattataag tattacactt gtagcgttag      3540
     gaagaagata taaataaata aataaaaaat aaa                                   3573
//
ID   Kiri-1_HMM  repbase;    DNA;    INV; 4507 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.10, Created)
DT   08-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4507
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2804-2804 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..845
FT                 /product="Kiri-1_HMM_1p"
FT                 /translation="MTTPVEQLMKSMEELSSMFSSRMGEFEKNLVQSGSAA
FT                 SNPTVKTLAAEFNTFKSFVWKTLGLLKSQIELVVVGLDRLETQSRRKVLLF
FT                 HGLEEDSNEDVLQKMLHVLSNHLKMSDIKSTAIEACHRLGVKKDSARPVLL
FT                 RFTSCQVRSSVWRAKTKLKGTKITMTEFLTKSRQDVFTAARKHFGIKKCWS
FT                 SEGMIVILLPNKSKIKISTQRELKQLIEQGSVTKPTASK"
FT   CDS           1681..4077
FT                 /product="Kiri-1_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MICMGDLNTCLLKNDRRTHLLKALNESYNLHLLPMSS
FT                 PTHYFPNCRPSLLDLISVSNPILVSSHGQMTAPFSFHDLIFLSYKLRPPKV
FT                 RGKILFQRNFKHMDVERLREDVRNIDWSSIMSSTNIDNMVESLTTELINIY
FT                 NIHAPVRPVRMKHAPAPWLTXVIRNTMAKRDRAKLKNKKSPSPENLTAYKK
FT                 LRNICNRMCRDAKRRYFHNTIQNLSQAQVWRFLESFGVGKTTETRQVSVDL
FT                 HTLNSFFTTPPFNISPLVKSETLALLSRIDLPDSIPFSFKAVSEDDVKKCV
FT                 NSISTKAFGIDNLSLEMILPVLESIAPVVTHIINFSLSSNVFPSQWKSAYV
FT                 IPLPKTSNPSNVADYRPISILPVLSKVLESLVNNQLYSFLSSNNLLCPFQS
FT                 GFRPFHSTVGALLNITEDIRCAMDNTKLTVMVLLDFSSAFNSVDFDILLGT
FT                 LRAVNISSAAISWFRSYLFGRRQCVKANDITSTWLDLTAGVPQGGVLSPLL
FT                 FSVFINNISRVITSPFHLYADDLQLYRHSNLNELPEAIESLNSDLDAIQTW
FT                 AESFGLLINPKKSQTIIIGSNRLRHKINWDSVPAIRYSGVPIPYCSEVRNL
FT                 GLIXDCNMSWAPHINAISRRMHFSFHSLRRLQYFLPHKTKIMLAQCLLLPI
FT                 LDYADVCYLDATEELLNKLERLQNLAIRFIFGLRKYDHVSQFRAQLNWLPI
FT                 RLRRDMHILTLLFKILNYKNFPAYLRSRFNVLPRPSRSRRSCVVPALDIPR
FT                 SNTKFLQKSFXVYAASLWNQLPNPIQRSPSLKSFKSQLKKHLLTTGNN"
XX
SQ   Sequence 4507 BP; 1197 A; 1011 C; 762 G; 1522 T; 15 other;
     ggcgggtaga cacaaaagtt gatagacgcg tttttaaagc tctgtgattt ttttcgtaaa        60
     aggtttttaa aagtacatat atgtggtgaa agtttaaata cctgtgttta agtcaataat       120
     aactaaactc actcactatt ttctacacca ctttcacaat gactacgcct gtggagcaac       180
     ttatgaaaag tatggaagaa ctctcctcta tgttctcatc cagaatgggt gagtttgaga       240
     aaaacttagt acagtccggt tctgcggctt ccaatcccac agtaaaaact ttggctgctg       300
     agtttaacac gttcaagtcc tttgtgtgga aaacccttgg cttgttaaag tctcagattg       360
     aacttgtggt agttggtctg gatcgcctgg aaacacagtc caggagaaaa gttctcctat       420
     tccatggctt agaagaggat agtaatgaag atgttctgca gaagatgctt catgtattat       480
     ccaaccactt gaagatgtcc gacattaagt ccactgcaat tgaggcgtgc cacaggctgg       540
     gtgttaaaaa agactctgcc cggcccgtac ttctcagatt cactagttgc caggttcgtt       600
     ccagcgtatg gagggcgaaa actaagttaa aaggcactaa aataactatg acggagttcc       660
     taacaaaatc tcgccaagat gtgtttactg cagcccgtaa gcattttggt attaagaaat       720
     gctggtcatc ggaaggcatg attgttattt tgctgccaaa taaatcgaaa atcaagattt       780
     ccactcagcg cgaactcaaa caactcatag aacaaggttc tgtaacgaaa cccacggcta       840
     gcaagtaatc tgttttagat cgggattttt gtatgccgta tcacttcaat attcccttta       900
     ttattaaatt tccattgtag ggtacactca tatgtaatta ttctcgtttc ggcaatttaa       960
     aaacatgttg tttacccgac tttcaacgga tcttaagttt gacttgttca cgttccgttt      1020
     tatgttaagc acttttctcg ttctcttttt ttttttaggt atttatatat ctgtattatt      1080
     aattgttttt tttttatttt atatgttata taaaatttgt atttatttat ttgtatatgt      1140
     taaattatgt taaatgaaaa tgaatacttt tcttgttctt ctagtattta tgatagtgcg      1200
     gatagtgatg acaattctga ttcagaacca ctctatgata agctgtcgaa aacttttaac      1260
     aataattgtt cttcaaccct ctccctggtg catattaacg cgcagagtgt tccagctcac      1320
     tattctgacc ttctcgcatc ctttagctcc ggcgtagttg actgtatact tatatctgag      1380
     acctggttaa aaccatcgct ttcctctgct tctattctct tccggctatc agctatatcg      1440
     caatgaccgc actggtcggg gtggtggtgg cgttggtatt tatctccgcg accacatccc      1500
     cgctagtgtc gtcttttgct cttcctctca acctgacggt ctctagaata cctttttcta      1560
     gagttgacct tgcgtcatac taaagtactk gtcggagtcc tgtactcccc saatgaccaa      1620
     gtcgattatt ttagcactct ggacggtatt cttgagaacc tccgaccccw atacgaacac      1680
     atgatttgca tgggcgattt aaatacgtgc cttttaaaaa atgatcgtag aactcatcta      1740
     ctaaaggcgt taaacgagtc ctataattta caccttttac ctatgtcttc ccccactcat      1800
     tactttccta attgtagacc ttctcttctt gatcttattt ctgtctctaa ccctattctt      1860
     gtttcttctc acggtcaaat gaccgctccg ttttcctttc acgatcttat ctttctatcc      1920
     tataaattac gtccacctaa ggttagaggc aaaatccttt ttcagcgcaa ttttaagcat      1980
     atggatgttg aacgcctaag ggaggatgtg aggaacatcg actggtcttc cataatgtca      2040
     tcwactaata ttgacaatat ggtagaatct ttaactactg aactgattaa catttacaac      2100
     atccatgccc ctgtaagacc agttcgtatg aagcatgcgc ctgccccctg gttaacwsaw      2160
     gttattagga atactatggc aaaacgcgac agagccaagc ttaaaaacaa aaaatctcct      2220
     tcgccagaaa atctcactgc gtataaaaag ctgcgaaaca tctgcaacag aatgtgtagg      2280
     gatgccaaac gtcgctactt ccataatact attcagaatc tcagtcaagc acaagtttgg      2340
     agattcttgg agtcgtttgg tgtaggcaaa accactgaaa ctcgtcaagt ctcagtggat      2400
     cttcacactc tcaattcttt ttttacaact ccaccattta atataagtcc cctagtaaaa      2460
     tctgaaacac ttgctttgtt gtcacgtatt gacctaccag actccattcc cttttctttt      2520
     aaagctgtat cggaggatga tgtcaagaag tgtgttaact ccatttccac caaagccttt      2580
     ggaattgaca atctcagcct tgagatgatt cttcctgtgt tggaaagcat tgcaccagtg      2640
     gtcacccaca ttatcaactt ttcactgtca agtaatgtct ttccttcaca atggaagagt      2700
     gcctatgtca ttccattacc caaaacmtct aatccctcca atgtcgctga ttaccgtccc      2760
     atatctatcc tccctgttct atctaaagtc cttgaatctt tagtcaataa ccaactttac      2820
     tcctttctct catccaacaa tctactgtgt cctttccagt ccggtttccg tccctttcac      2880
     agcacagttg gagcactgct gaatattacg gaggacattc ggtgtgctat ggacaacacc      2940
     aagctcactg ttatggttct gctggatttc agcagtgctt ttaactctgt tgacttcgat      3000
     atacttcttg gcactcttcg agcagtcaat atttcttctg cagctataag ctggtttcgt      3060
     tcttacctct tcggccgccg gcaatgtgtg aaagcwaacg atatcacatc gacttggctt      3120
     gatctcactg ctggcgttcc ccaaggcggc gttctttctc cacttctctt ttctgtcttt      3180
     attaacaata tttctagagt cattacttct cccttccatc tgtatgcaga tgatttgcaa      3240
     ctttaccgtc acagtaactt aaatgaattg cctgaagcta tcgaaagttt aaatagcgat      3300
     cttgatgcta tacaaacttg ggccgaatct tttggcctat taatcaaccc taaaaaatct      3360
     cagactatta tcataggcag taatagactt agacacaaaa tcaactggga ttctgtgcca      3420
     gcgatacgct actcaggagt gccgattccc tattgtagcg aggttaggaa cttaggtctt      3480
     ataatkgatt gtaacatgtc ttgggcaccg catatcaatg caatcagcag gcgcatgcat      3540
     ttctccttcc attctcttag gcgtctccaa tacttccttc ctcacaaaac caaaattatg      3600
     ctagcgcaat gtcttctcct tccaatactc gactacgctg acgtttgcta tttggatgcg      3660
     accgaggagc tacttaacaa attagagcgt cttcaaaatc tcgccatacg ctttattttc      3720
     ggcttacgta agtatgacca tgtttctcaa tttcgtgctc agcttaattg gctcccaatt      3780
     cgtcttcgcc gtgatatgca catccttacc ttacttttta aaatccttaa ctacaaaaat      3840
     tttcctgctt acctacgctc ccgcttcaac gttcttcctc gtccctcacg ctctaggcgg      3900
     tcgtgcgtcg ttccggcgct cgacatacct aggagcaata ccaaattcct gcagaaatcc      3960
     ttcwccgtat atgccgcatc cctttggaac caactcccca accctatcca gagaagccct      4020
     tccctaaaat cctttaaatc ccaattaaaa aagcatttac tcactactgg gaacaattaa      4080
     tttacattcc gacagtgttt caaatactgc actgcatttc atttttmttt tctttaactc      4140
     atctaaatat atatatttat gtatatataa gtattgttta gtataagtat gttgtttttt      4200
     tatagtatat gtgtagttat ttatatgtgc aaagtatata tgtatatgta gtttatgtat      4260
     gtataattgt atatatgtat gtattgattc attagtgtct tatttcattg ttagtactat      4320
     tattttctta tttatttttc tttctgtgta attgcactgt actctccccg ctgttttgac      4380
     agcatatcca cttccactgg ttggctggaa gagatttctt ttagaaataa gcccaccmtt      4440
     gtcaactawt ttctcatttt attttactka atgttttttt tagtgcaata aagaatatat      4500
     atatata                                                                4507
//
ID   Kiri-1_LMi  repbase;    DNA;    INV; 3748 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3748
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3155-3155 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(377..3277,3281..3517)
FT                 /product="Kiri-1_LMi_1p"
FT                 /translation="MCPAFAEKDAATPQPAAVALPTSGIIARATTERTKLH
FT                 VAHANVQSLQAHLVEFRHIFQDLGLHIILLSETWLKPSITTSSVNLDGYVF
FT                 LRHDRLNKRGGGVGAYIRSELSPTVLHTSNNDETEQVEYMFIEIKPLKEKC
FT                 LICVLYKPPKVGALDCFETALSDLESTYEHIIIAGDTNINFLFNSPSCMKF
FT                 KRMLTSSNLTLLQLAPTHHTADSHTLIDIFATRFPDRVIRTSQTSAPGMSA
FT                 HDVIFMTYSLECPRKKPLLTTYRDLRRVNLPELTADAXEIVFEPTSDTLPD
FT                 VNEKLHKITNKLNQLYDKYAPIKTKKVRRKPAPWLTDELKQLMNLRDTAHR
FT                 TYKLHPTPENHTAYKQKRNRVSQAVRNAKLRYAHSLTDNINRPAVLWKNLR
FT                 GLGIGKVKTAAEPTVPIEELNQYFTTPTTTIDHQTKQTLIDHITRINNANH
FT                 DKFCFKHVTGSTVKKAIMRITSASTGDDGITIQMIKLIIDPLLPIITDIFN
FT                 QSLATSVFPDAWKRGLVKPLPKKDIATAPSDYRPICILPALSKALEYIVHD
FT                 QLTSYLTINNLLDEHQSGFRKYRSTTSALIKVTDDLKQAMDRQEATIMCFL
FT                 DFSKAFDTVDFDILLAKLSSLNLSQGVVQWFRSYLTSRLQCVMSGTEKSQW
FT                 RKVLSGVPQGSVLGPLLFSLYVNDVSSVLSFCKYHMYADDLQLYLSAKPKN
FT                 LKTAIENFNSDLCALSKWAQNIGLKLNPSKTQAILVGHPRLINHKYRESQP
FT                 SLILNDTPIYFSPSAKSLGVIIDDKLNWAEHTAAVCRKASASLHALQRYKK
FT                 FFPLDLKKKLIQTLVIPIIDYSDVILQGLSWESSRRLELIMNACVRYICNI
FT                 RLFDHISPSYKQLSWLRADKRRDFHTLCFLYSLINVHCPSYLSSTLTLLSD
FT                 QHNRTTRSCQSKTLSVPIHHSAGFSKSFSVAGTRLWNNLPQYIRELNNTAS
FT                 FKRQLMDYLLKQLRQSLIPYGPGTSHPFLLPDILLLPLLSPGTAFLTSFCQ
FT                 NSPCLNQSRYIQKYILYLLISMLLLLLLHQQQQKVSQWYC"
XX
SQ   Sequence 3748 BP; 1113 A; 963 C; 649 G; 1022 T; 1 other;
     ctggttcact ttaggatagt gctgttttac tattaatctc atacttacat tattaattac        60
     ggtaccatat taggtttaaa ttcaatttta tatagcgttg gtctcacgca tcattggcaa       120
     ttgctcgctc tactatcgat attgttatct ttatttagtg ttgttccgtg cagattactt       180
     ttactgtgct tggcgagatt ctcccccccc cctcagcgcc ccgccctcgg cgaacggccg       240
     gcgaccttgg ctgcagcgcc tccctgtccc tcccctgtcc tgaacccacc tgacctgctt       300
     cgctctctct ctctgctgtc ctgcactcct cccccgaccc cccggaccgc tagccaccca       360
     gccacgccac attccaatgt gtcctgcgtt cgcagaaaag gacgccgcca ccccacagcc       420
     cgctgccgtt gccctaccga ctagcggtat catcgcgcgc gctacaactg agcgcacaaa       480
     gctccacgtt gcacacgcaa atgttcaatc tctacaagct catttagttg agttccgcca       540
     tatatttcaa gacttgggtc ttcatataat tcttctatcg gagacctggc tcaaaccaag       600
     cattaccacc agttccgtaa atttagacgg ctatgtcttc ctaagacacg accgattgaa       660
     caaacgcgga ggcggcgttg gagcttacat tcgctctgaa ttatctccta ccgtgttgca       720
     cacgtcaaat aacgatgaaa ctgaacaagt ggaatacatg ttcatagaga taaaacccct       780
     caaagaaaag tgtctaatat gcgtcctcta taaacctccg aaggtaggtg cgttggactg       840
     cttcgaaact gccctctcag acctcgaatc aacttatgag cacataatta tagcaggtga       900
     cactaacata aattttctgt tcaacagtcc gtcctgtatg aagttcaagc gtatgcttac       960
     gtcttcgaat ctgaccttac ttcagcttgc acccacccat cacacagctg atagtcacac      1020
     tttaatagat atatttgcaa caaggtttcc agacagagta attcgaacgt cacaaacatc      1080
     tgcacctggt atgtctgccc atgatgtaat tttcatgacg tactcgctag aatgccctag      1140
     gaagaaacca ctgctaacta cataccgtga cttaagacgc gtcaacttac ctgaactgac      1200
     agctgatgca cwagaaatag ttttcgagcc aacctccgac accctcccgg acgtaaacga      1260
     gaaacttcac aaaattacaa ataaacttaa ccagctgtat gataaatatg cgcccatcaa      1320
     gaccaaaaaa gtgagaagga aacctgcacc ctggctaact gatgaactaa aacagctcat      1380
     gaatctcaga gacactgcac atcggacata caaactgcac cctacacctg aaaatcacac      1440
     cgcttacaag cagaaacgta acagagtcag ccaggctgtg agaaatgcta aactcagata      1500
     cgcccattca ttaaccgaca acataaatag accggctgtc ctctggaaaa acctgcgcgg      1560
     tcttggtatt gggaaagtaa aaactgcagc cgaacccact gtccccattg aggaactaaa      1620
     tcagtatttc acaacgccta ccaccacaat cgatcaccaa acgaaacaaa cacttattga      1680
     ccatatcacg aggataaaca acgctaacca tgataagttt tgttttaagc atgttactgg      1740
     aagtacagtc aaaaaagcca ttatgcgtat tacatcagcg tctaccgggg atgatggtat      1800
     cactatccaa atgataaagc tgattattga tccactgctg cccatcataa cagatatatt      1860
     taatcagtcc ttagccacaa gtgtttttcc tgatgcatgg aaacgtggac tagttaagcc      1920
     actgccaaaa aaggacattg ccacagcacc ctctgattac cgacctatct gcattcttcc      1980
     ggcactatcc aaagccctag aatatatagt acatgatcag ctaaccagct acttgactat      2040
     taataacctt cttgacgaac accaatcagg ttttcgcaaa tatcgcagca caacatctgc      2100
     tttgataaaa gtgacagacg atcttaagca ggcaatggat agacaagagg cgactattat      2160
     gtgcttctta gactttagca aagctttcga cactgtggac tttgacattt tacttgctaa      2220
     acttagcagc ctaaatctct ctcaaggcgt ggtgcaatgg tttcgctcat acttgacatc      2280
     gcgtcttcag tgcgtcatgt ccggcaccga aaagtcacag tggagaaaag tactatcagg      2340
     cgtaccacag ggctcggtat taggtccact tctcttttca ttgtacgtaa atgacgtatc      2400
     atcggtcttg tccttttgta aataccacat gtatgccgat gacctccagt tgtatttaag      2460
     tgcaaaacca aaaaacctga agacagcaat cgaaaatttt aattctgacc tatgtgcact      2520
     atcaaagtgg gcacagaata taggattaaa gctcaatcca agtaaaacac aagcgattct      2580
     ggtaggtcat cctaggctca ttaaccacaa ataccgcgaa tctcaaccat cattaatatt      2640
     aaatgacaca cctatctatt tttcgccctc ggcaaaaagt ctgggagtga taatagacga      2700
     caaactaaat tgggctgagc acacagccgc cgtgtgtagg aaggcatcag catctcttca      2760
     tgccctacag agatataaga agttttttcc tctcgatctt aaaaagaaac ttatacaaac      2820
     acttgtaatt ccaattattg attacagtga tgttatcttg caaggtcttt cttgggaaag      2880
     ctcacgacgt ctggaactaa tcatgaatgc ctgcgttcga tatatatgta acatccgtct      2940
     ctttgatcac atttcaccat cttataagca actatcctgg ctccgtgctg acaagcgcag      3000
     agattttcat acactctgtt tcctctactc tcttatcaac gtacactgtc cctcatatct      3060
     ttcctcgacc ttaacactct tatctgatca acataacaga actactcgtt cctgtcagag      3120
     caaaaccctt tctgtcccta tccatcactc agccggtttc tcaaaatcct tttcagtagc      3180
     aggaaccagg ctctggaaca atctacctca gtatatcaga gaactgaata acactgccag      3240
     cttcaaacga cagttaatgg attatctact aaagcaataa ttacgccagt ctttaatacc      3300
     ctacggtcca ggtacgtcac atccattcct cctcccagat attctcctac tgccattgct      3360
     ctcgccaggt acagctttct taacttcctt ctgtcagaat tcgccatgcc ttaaccagtc      3420
     tcgatatatt caaaagtaca tcttgtatct gctaatatca atgttgttac ttctattatt      3480
     acaccagcag cagcagaagg tgtctcagtg gtactgctag tattaatcct attagagtta      3540
     agtcaatacc ttttatttac atccttttac atgtaatcaa cctgtataaa ttatgttatt      3600
     aactgtttat ctgtaaaaat cattgttatg ttataggtaa ctcacatgta aagaaatact      3660
     gtatgtgtaa aaccctggtc cgatgtaaga gagggcctga tggccctaat ctgatcaggc      3720
     taaataaaca aataaataaa taaataaa                                         3748
//
ID   Kiri-1_PPo  repbase;    DNA;    INV; 212 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-212
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3116-3116 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated.
XX
SQ   Sequence 212 BP; 67 A; 30 C; 33 G; 82 T; 0 other;
     atgtatgtat tatatatatt atatgtttgt ttatatatct attaaatacc cttgtgtgtt        60
     tgtcttgctt ctcctgtccc actgggttgc ctggaagaga tcgctcttag cgataaggcc       120
     gcccttgcgc aaatctaatg ttacttaatt taagctttgt tgtattatat gtgcaaaagt       180
     attaaataaa taaataaaaa aaattaaata aa                                     212
//
ID   Kiri-1_PXu  repbase;    DNA;    INV; 340 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-303
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3078-3078 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 340 BP; 96 A; 45 C; 41 G; 155 T; 3 other;
     ttattttttk cttttcctak aatttatata tttctattca taggttcgtg tattcatgta        60
     tattatatat ttatgttgct taatttgttt agtatatcca tatgtaacta gtatatatat       120
     attatwaata attcttgctc ttatttattt attcttgaca tatcctgata tttatatgtt       180
     atatacccct ctatctatgt tattctctcc tgtcccactg ggttgcctgg aagagatcgc       240
     ttgtagcgat aaggccgccc ttgctttgta aattagttaa ttgtcatttt tttatgtatt       300
     atgatagcat taagagttaa taaataaata aataaataaa                             340
//
ID   Kiri-20_AAe repbase;    DNA;    INV; 4639 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-20_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4639
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 715-715 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >94%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..1070
FT                 /product="Kiri-20_AAe_1p"
FT                 /translation="MNQNKPLTRSTSSSSSSLNAIGKQQTLQHNNNVESLT
FT                 DLWDKIQEMFAQSKNDIEAKIDSCKTDLEKKIDALEQKLSDLRLDCGAEIE
FT                 KIANVVSDVENDLACTKRNVVRLESSHELIVSGVPYTNDENPMLIFQNIAK
FT                 ALSYCATAIPMVHVKRLAKLPISVGSSPPLLIQFALRNLRDEFYGRYLRER
FT                 SLNLRHIGFNNDNRIYMNENLSQADREIRTQAIKLKRQGRIHQVYTRSGMV
FT                 YARIKNQDDAVPLQSLEQLFSYVN"
FT   CDS           1658..4480
FT                 /product="Kiri-20_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANSHNNTSASMLIPRAVFNTILDKNAINICHINVQS
FT                 LCARNFSKFHELKANFFNSKMDIVCMTETWLGNVVTDQMISIEGYNLLRND
FT                 RDRHGGGLCIYIRNNLSFKILQSSIPCNPMNSTSTTEFLVIEVRSGLEPFL
FT                 LSLYYNPPDNDCSELLRVHFEQYTVKYNHTFFIGDFNTDLLKNNSRSHRFR
FT                 DTLSSMSYTCLNSEPTFFYTSGCSLLDLIITDSPSIVSSFNQVSIPFASRH
FT                 DLIFASLNIAKADDKIDIYRDYKNYNERSLHDAFHNMNWDSFYSITDSNIL
FT                 LNVLNNRLKFLHDEFIPLRKQKHKTNPWFNRDIELAIVDRNIAYSNWIRSR
FT                 DASDELHFKRQRNRVNLLIRDAKRRYDSNKFNASLPCKQLWSNIKKLGVSK
FT                 TNSLENNLDFCGDDINSYFTENFTVDDLSTPTVSYRSEGFRFRLVDDTEII
FT                 YAINTIKSGAVGLDGIPIIFIKIMLPLMLPYFKHLFNTIISSSKFPSGWKA
FT                 VKIIPIKKKPRQNSISNLRPISILCALSKVFEKLLKTQISAFVSEMEFLHP
FT                 FQSGFRQHHGTNTALMKVHDDIAKVIDKKGIAILLLIDFAKAFDRVSHRKL
FT                 LLKLGEVFQFSHAATKLMHSYLTDRSQAVFCNDKLSRFESIVSGVPQGSVL
FT                 GPLLFSLFINDLPSTLRYCSVHLFADDVQIYLCELEPSNYGSLGEKVNYDL
FT                 QRILDWSQRNLLPINPAKTKAMLINRGRNIFECPDLVMDGENIEFVDRVES
FT                 LGIIITSKLNWDDQINSQCGKIYGCLKRLNLVTRHFSIPIKLKLFKTLLLP
FT                 HFIYGDFINLNASVASLDKLRLALNSCVRYVYNLSRFSRVSHLHKELIGCS
FT                 FSNLYRYRSCITIFKILLLKKPEYLFTKLSPMRSDRNRSLLIPQHRSAYYS
FT                 QSLFARGIVFWNQLPLHIKTNVSMVNFKRDLKQLLAA"
XX
SQ   Sequence 4639 BP; 1461 A; 830 C; 824 G; 1524 T; 0 other;
     ttctgaaggg aatgagtgct atagagtgaa acaataggtg gctgcagtta cgttggctta        60
     taagtgatgc tggagtcttt ctaaaatcaa gttccaaggc agttcatcat atatagtgaa       120
     agtttgatct tcatcaacta aagttttccg cctacaatta cattccgcag tgaattcgtt       180
     gaataattac tgctaagcac tactacgtca agtccccttc agaattgtat gccaattggt       240
     tactctcttc agtttgtcct ttgttctttg acaaaatgaa tcaaaacaaa ccactcactc       300
     gctccacatc ttcatcgtcc tcttcgttga acgcaatcgg taaacagcaa acacttcaac       360
     ataacaataa tgtggaatcg ttaactgacc tatgggataa gattcaggaa atgtttgcgc       420
     agtcgaaaaa cgatattgaa gccaaaatcg attcttgcaa gacggacctg gagaaaaaga       480
     tcgatgctct tgaacaaaaa ctatctgatc tcagactgga ttgcggtgca gaaatagaaa       540
     aaattgctaa tgttgtttcg gatgtggaaa acgatctagc ttgtactaaa cgaaatgttg       600
     ttcggctgga gtcttctcat gagctaatcg tttctggagt accgtacacg aacgatgaaa       660
     atccaatgtt aatcttccag aacattgcta aggctctatc ctactgtgcg acagctatac       720
     caatggtgca tgtcaaacgg cttgcaaaac ttccaatcag cgttggatca tcaccgcctt       780
     tacttattca atttgcgcta cggaatctac gtgatgaatt ttacgggagg tatctacgtg       840
     agagatcgct caaccttcgg cacattggat tcaacaatga caacagaatc tacatgaatg       900
     aaaacctaag ccaggctgac agggagatca ggacgcaagc aatcaaactt aaaagacaag       960
     gacggattca tcaagtatac acacgaagtg gaatggttta tgcacggata aaaaaccagg      1020
     atgatgcagt accgttacaa tctttggaac aacttttttc gtacgtcaac taacctatcc      1080
     tatgaatttc ttattcctgc tcatattatc catgtttcac ttccatgtta atccatgaaa      1140
     cccagtccgc tcctaaaagt cactgaatcg aactgaattg ccgaatttcc ccttccttgt      1200
     tatatacact tttttcctac caagcaaatc catcaatccg atcccaagtt gtccttgtct      1260
     ccatccttcc tgaaagttaa tggaagaaca tcgaggagat cacatcgtcg aatttaatta      1320
     tggtaatgct gctgctggtg ctgaatggat gctgctgttg acggattgct gatgctgttg      1380
     ctgtgatttt ttttgctact caattgaaga tgacactgat gatctattgt atatggccta      1440
     cgtgaaactc gatactgttg tttgcgatac tgctgttatt tttgtgcttt actattgaat      1500
     tagcttcata agccaattag actgcaacta ttgtttattg aattcatgtc cagaaactta      1560
     attaggttag gatacttcat tgatgatact gtttcatatc tgctgcgact gttatatggg      1620
     tttcttttga agttcgttct atttttcgta tacgataatg gctaattcac ataacaatac      1680
     ctctgcgtct atgttgattc caagagcagt ttttaacaca attttagaca aaaatgcaat      1740
     aaatatttgc catataaacg tacaaagctt atgtgctaga aatttttcca agtttcatga      1800
     actcaaagct aattttttca acagtaaaat ggatatagta tgcatgacgg aaacttggct      1860
     tggtaatgtc gttacagatc agatgatttc tattgaagga tacaacttat tgcgaaatga      1920
     ccgtgatcga catggtggag gtttgtgcat atatattaga aacaatttgt ctttcaaaat      1980
     actacaatcg tccattccat gcaatccaat gaattctaca tcaacaactg agtttctggt      2040
     gattgaagtg cggagtggct tagagccatt cttgttatct ttgtattaca atcctcccga      2100
     taatgactgc tctgaactct taagagtgca tttcgaacag tataccgtca aatacaatca      2160
     tacatttttt atcggagact tcaatacaga tcttttaaaa aataattcta gatctcatcg      2220
     ttttcgggac acgttgtctt ccatgtcgta cacatgtctc aatagtgaac caacgttttt      2280
     ctatacaagt ggttgctctt tactagatct tatcataact gattctccca gcatagtctc      2340
     aagttttaac caagtttcaa taccatttgc ttccaggcat gatcttattt ttgcttcgtt      2400
     aaacatcgcc aaggctgatg ataagataga tatttacaga gattacaaaa attacaatga      2460
     acggagcttg catgacgcat ttcataatat gaattgggat tccttttata gcatcacaga      2520
     tagtaacatt cttcttaatg tattaaataa tcgtttaaaa ttcttacatg atgaattcat      2580
     tcctttacgg aagcaaaaac ataaaaccaa tccttggttt aaccgggata tcgagcttgc      2640
     tattgtagac agaaatattg cttattctaa ctggatacgc agtagggatg cttctgatga      2700
     gctccatttt aaacgacaaa ggaatagagt aaatctgttg atacgtgatg ccaaacgacg      2760
     atatgattcc aataagttta acgcaagttt gccttgtaag caattatggt ctaatataaa      2820
     gaaattagga gtttcaaaaa ctaattcttt ggaaaataat cttgactttt gtggagatga      2880
     tattaatagc tattttactg agaatttcac agtagatgat ttatctacac cgactgtaag      2940
     ttatagatct gaaggattca gatttcgctt ggtggatgac actgaaataa tttacgccat      3000
     caatacaata aaatcgggtg ctgtaggttt agatggaatt cctataatat ttatcaaaat      3060
     aatgctacca cttatgttgc cgtattttaa gcatttgttc aatactataa tttctagttc      3120
     aaaatttccg agtggttgga aagcagtgaa aattattcct attaaaaaga aacctagaca      3180
     aaactcgatc agtaaccttc ggcctatcag tattctgtgt gctctttcca aagtttttga      3240
     aaaactgtta aaaacgcaaa tttctgcctt tgtttctgag atggaattcc tacacccatt      3300
     tcaatcagga ttcagacaac atcatggtac aaatacagcc ttaatgaaag ttcatgatga      3360
     tattgccaaa gttatagata aaaaaggaat cgctattttg ctgctgattg attttgcaaa      3420
     agcatttgat cgagtgtcgc atcgaaagct tctattgaaa ttaggagaag tgttccagtt      3480
     ctctcatgcg gcaactaagt taatgcattc atacctaact gatcgatctc aggctgtttt      3540
     ctgcaatgac aagttatctc gctttgagag tattgtatct ggagttcccc aaggatcagt      3600
     actagggcca ttgctttttt cattatttat taatgatttg ccctccacct tacgctactg      3660
     ttcagttcat ctctttgctg atgatgtcca gatatatttg tgtgaattgg agccaagtaa      3720
     ttatggttcc ttgggagaaa aggttaatta tgatctacaa agaattttag attggtcaca      3780
     gcgaaatttg ttaccaatca atccagcaaa aactaaagca atgctgataa atagaggtag      3840
     gaatattttt gagtgtccgg atttggtaat ggatggagaa aacatagaat ttgttgatcg      3900
     tgtagagagt ctaggaataa tcataacgtc taaacttaat tgggatgatc agataaactc      3960
     acaatgtggt aaaatatatg gttgcctaaa aagattaaat ttagttacca gacattttag      4020
     tatccctatc aaacttaaac tttttaaaac tttacttctc cctcatttca tttatggtga      4080
     ttttattaat ttgaatgcgt cggttgcttc gctagataag ttgagacttg ctctaaattc      4140
     ttgtgtaaga tacgtttata atttgtcgag attttcaaga gtgtctcatc tccacaaaga      4200
     actcattggt tgcagttttt caaaccttta tagatatagg tcatgcataa caatattcaa      4260
     aattctattg ttgaaaaagc cagaatattt gtttacaaaa ctttctccta tgcgatccga      4320
     tagaaataga agccttttaa ttcctcaaca tcgttctgca tattacagtc aatctttgtt      4380
     cgcaagaggt attgtcttct ggaaccaatt gccactacat attaaaacaa atgtctcaat      4440
     ggtgaatttt aaaagggacc taaaacagtt gttggcagca tgattcaggg atttgatgaa      4500
     gtatagtttg aattaacatt gaaaattaaa tattagaata tctttggcgt attattttct      4560
     tatcaagtgt aatgatttac aaggctttta gccttatatt acatgaattc acaaataaat      4620
     aaataaataa ataaataaa                                                   4639
//
ID   Kiri-20_HMM repbase;    DNA;    INV; 3117 BP.
XX
AC   .
XX
DT   15-FEB-2013 (Rel. 19.10, Created)
DT   15-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-20_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3117
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2814-2814 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' is uncertain, 3' is ended with
CC   (AAT)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2711
FT                 /product="Kiri-20_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LVSEXWLKPCLPSTSYSLPGFHLIRNDRIGRSGGGVA
FT                 IYLRSHIAFSIVDQSQHQTDGGPEHLFIEVVLSHTRVLLGVYYSPNLTIDY
FT                 FSSFETLLERLKPLYPHTILMGDFNTCLLKDDHRASRLRSLVTGANLHVLP
FT                 LTATHNFPNCLPSLLDLALVSSVDHVEKHGQYPALAFSYHDLIYLSYKIKP
FT                 PKAKSRILLRRNFGGIDWNQLREDAAATNWHEISNYATINEQVAAFNSLIL
FT                 QLYDRHAPLRPIRVRHLPAPWLTEDIKMLQRKKNMAKVRYILKPSDKNKLK
FT                 YNKARNHCNRVCRDHQRRHIHKSILEEDDSSRVWKFLESIGVGKARQNLNP
FT                 QNINLNKLNKHFSSSSNINDTTKQNTLNQIAAFASPNIPNFFFSRFTESDV
FT                 KKNIMAISSDAVGADCVSRKMIIPILDIICPILTSMLNFSIDSCXFPSAWK
FT                 XAQIIPLPKKNNPTCDNDYRPISILPFLSKVLERMVQSQLTYFLSKNNLLN
FT                 PLQSGFRPGHSTITALVKITDDIRMGMDSQEVTVLVLLDFSNAFGTVDFDI
FT                 MLATLGSLNISPNVIDWFHNYLHGRRQRIRICDSYSDWSSVNAGVPQGGVL
FT                 SPLLFSLFINNISQHITSLYHLYADDLQIYCKSKTSELPAAINTINNNLTK
FT                 ISAWSRCFGVQLNPSKSQAIVVGSPKLISKISIPALPDIILNGQIIPYSKS
FT                 VKNLGIIIDHNMSWNPQVSEVSRKMFASVGYLFRLRNFLPIPTKIVLAQSL
FT                 LLPILDYADSCYLDLKEEQLNKLERLQNLAIRFIFGLKKYDHVSDFRKKLK
FT                 WLPIRLRRNTHILRLLYCVLFDPLTPPYLKERFEFLGHSHSRHLRSEQNLI
FT                 LKIPSHSSSFLSNSFTVTSSRLWNALPLNIRRAKSLKTFKRLLKLHYHAL"
XX
SQ   Sequence 3117 BP; 877 A; 664 C; 521 G; 1051 T; 4 other;
     tattggtgtc agaawcttgg ctaaagccat gtctgccatc gacttcttac tcgcttccag        60
     ggtttcatct gattcgtaat gatcgtattg gccgctctgg gggtggtgtt gctatatatc       120
     tacgttcgca tattgctttt agtatagtgg accaatckca gcaccaaaca gatggtggcc       180
     ccgaacacct gtttattgaa gtagttcttt cacatacaag ggtcttactg ggagtttatt       240
     acagtccgaa ccttacgatc gactactttt catcttttga aaccctgttg gagcgactga       300
     agcctttata ccctcataca attttaatgg gtgactttaa cacatgtctg ttaaaagatg       360
     accatcgtgc ctctcgcctg aggtccttgg ttactggtgc taatttgcat gttcttcctc       420
     tcactgcaac gcataacttt ccaaattgtt taccctcact tctggactta gctcttgtct       480
     cttctgttga tcacgttgaa aaacacggtc aataccctgc tctggccttt tcttatcatg       540
     accttattta cttatcgtat aaaattaaac ccccaaaagc taaatcaaga attcttctgc       600
     gacgcaattt tggcggaata gactggaatc aactgcggga agacgcagct gcaacaaact       660
     ggcacgaaat ttcaaattat gcaacaatta acgagcaagt tgctgccttc aactccttaa       720
     tattgcaact ttatgatcgt cacgctccat tgcgtcctat tcgggtgaga catcttcctg       780
     ctccctggct aactgaggat ataaaaatgc tgcaaagaaa gaaaaatatg gcaaaagtac       840
     gttatatttt aaagcctagt gacaaaaata aacttaaata caacaaagct cggaatcatt       900
     gcaatagagt gtgtagagac catcaacgac gccatatcca taaatctata cttgaagaag       960
     atgattcttc tagagtatgg aaatttcttg aatccatagg agtaggtaaa gcacgtcaaa      1020
     accttaatcc tcagaatata aatctaaaca agctaaataa gcatttctct tcttcgagta      1080
     acattaatga tactaccaaa cagaatacac ttaatcaaat cgccgctttc gcctctccta      1140
     atattccaaa ttttttcttt agtcgattta cggaaagtga tgttaagaaa aatattatgg      1200
     ctattagctc cgatgctgtt ggtgctgact gcgtcagccg taaaatgatc atccccatac      1260
     ttgatatcat ttgtcccatc ctaacttcca tgcttaattt ttccattgat tcctgtgakt      1320
     tcccttcagc atggaaggaw gcacaaatca ttcccttacc taaaaagaac aatcccactt      1380
     gtgataacga ttaccgtcca atttccatac ttcctttctt atccaaagtc ctagaacgca      1440
     tggtgcaaag ccaactcact tatttccttt ctaaaaataa ccttctaaat cctttgcaat      1500
     ccggtttccg tcctggtcat agcacgataa cagcacttgt caaaataacc gatgatatcc      1560
     gaatgggtat ggacagtcaa gaggtcacgg tattagtgtt gctggatttt agtaatgctt      1620
     ttggcaccgt agattttgac ataatgcttg ccactttagg ttctcttaac atatctccta      1680
     atgtaatcga ctggtttcat aattacctgc atggacgccg tcaacgtata cgaatttgtg      1740
     attcttattc ggactggtcc tcagtcaatg ctggcgtccc gcagggtggc gtgttgtctc      1800
     ctctgctgtt ttcacttttt attaataata tttcccaaca tatcacttct ctctaccacc      1860
     tatacgcaga tgatctccaa atttattgta agtctaaaac ctctgagcta ccagcggcta      1920
     tcaatacgat aaacaataat ttaacgaaaa tatccgcatg gagtaggtgc tttggagtgc      1980
     aattgaatcc tagcaagtct caagccattg ttgttggtag tccaaagctc atatctaaaa      2040
     ttagcatacc cgccttacct gatataattt taaatggcca aattataccg tatagtaaat      2100
     cagttaaaaa tcttggtatc atcatcgatc acaatatgtc ctggaatccg caggtgagtg      2160
     aggtgagcag aaagatgttt gcatcagtag gatatctttt caggctacgt aatttccttc      2220
     ctattccgac aaaaattgtg ttagcacagt ctctactttt accaattctt gattatgctg      2280
     actcttgtta tcttgatttg aaagaggagc agttaaacaa acttgagcga ttacaaaatc      2340
     ttgctattcg gtttattttt ggattaaaaa agtacgacca tgtctctgac ttccgcaaaa      2400
     agctcaagtg gctcccaatc cgtcttcgca ggaatactca tattctccgt cttctttact      2460
     gtgtactatt tgatccacta acaccaccat atcttaaaga gcgtttcgag tttttggggc      2520
     actctcattc ccgacatctt cgctctgaac aaaatttaat tctaaaaata ccttcacact      2580
     cctcttcctt cctcagcaat tcttttactg tcacatcctc ccgactttgg aatgccttac      2640
     ctctgaatat cagacgggca aaatctttaa aaacatttaa gcgactccta aaactacact      2700
     accatgccct ctaaactgcc tttttgtatt gccacctata cttataaaat atgaaaatgt      2760
     atgtaggtat gtatgtatgt atgtttattt gtatttgtat gtatgtatgt atggggggga      2820
     tatttatgta tgtaagtata tatgtgtaat gtgtacgttt aattaggtat ttatatttgt      2880
     atatatttaa tatatgtatg ctgtttgctt tataaattta ttataattat tgtttacacc      2940
     tcaacccttt tcctcccttt ttttatccta tgccttaagg ttgcctggaa gagatcgctg      3000
     ttttagcgat aaggtcgcct cttgtacatt tccgtctttt ttttttgttg tctattttat      3060
     tgttattttc cttatgggtg tacaataaag agtattatta ttattattat tattatt         3117
//
ID   Kiri-21_AAe repbase;    DNA;    INV; 4554 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-21_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4554
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 716-716 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 17 sequences with >94%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           264..1064
FT                 /product="Kiri-21_AAe_1p"
FT                 /translation="MIRHTCQLDVAIKTMDTPIYNDLLNNVHKFDELCEKM
FT                 QLMFQKVQDNIASKINAYQHELSERINCIEARISTIRNESIANVEQMIESV
FT                 KKVRSDSLFINDKLQFVNRSKELIISGVPNDVNKNLYEIFRSIAKRLGYKD
FT                 EDVPVVDLDRLPSTSSDKSFIVCRFALRTSRYKFFKSYLSDLSLCLKDIGY
FT                 SPNPNDTNGSLSRIFINESLSKRVRDIRSTAMRMKKAGLIEKVSIRDGEVL
FT                 VKLHKMDPFLPCRTKQALLETLNLSK"
FT   CDS           1557..4376
FT                 /product="Kiri-21_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASSPIDNTSSSSIITKAVMDSVFRTDKLNICHINVQ
FT                 SVCARGFSKFDELKAVFFNSKAHIVCMSETWLNESINDSMIRIEGYNLIRN
FT                 DRNRHGGGLCVYFRQNLSLKLLKKSTFSPYEPSHITEYLLFEVATSNRKFF
FT                 LGVYYNPPNNDCSNLIFEHLEEFKMKYDLTFITGDFNTDLKKVTPRTNRFT
FT                 DVLSNLSYVCLNQEPTYFHTTGCSLLDLFIIDSPEIVFRINQVSMPGISRH
FT                 DMILAVLDIFSDSSEQGFFHRDYKNFDSQGLLTAFNNIDWNYFHSISDSDM
FT                 LIHILNEHFQYLHEEFFPLKFSKYRKNPWYNEDIEKAIIDRDLAYRNWKAS
FT                 RLQSHNLLFKTLRNRVTTIIRNAKRSYYNQRINTNVPSKQLWRNIKSLGIA
FT                 NKKQSSVNCDTTADEINAFFSENYSSDENPRLNLNYGPFGFRCVEEFEIVN
FT                 ALFSIKSNASGLDNLPIEFFKIMLPLALPLYTHLFNTIITTSKFPQAWKYV
FT                 KVIPIKKKPRSTSISNLRPISILNALSKAFEKIVSAQISDYVNRNNFLSPF
FT                 QSGFRRNHSTETALMKVHDDIASSIDKKGIAVLLLIDFAKAFDRVSHRKLL
FT                 NKLGALFGFSRPAVKLIETYLTNRYQSVFFNSQFSSLRPIDSGVPQGSILG
FT                 PLLFSLFINDLPXALKFCSVHMFADDVQIYFCADSRTSTMEMSRLINYDLQ
FT                 QVFQWSQENLLPINTTKTKAVFINRHRRSHFSMPELIMNNEQIQFADQVNN
FT                 LGVIFNSKLDWEPQINSQVGKIYGILKQLSLTTNHLSYQMKIKLFKSLIYP
FT                 HFIYNDFIYLNATANSLNKLRVALNSCIRFVFNIPRFGSVTHLQTSLISCP
FT                 FDQFLKYRSCCHIYKILTSGNPGYLSSKLNPCRNTRTRSLLVPLHHTSYYS
FT                 HSLFVRGIINWNYLPLNLKLSVNFSSFKRDLLLELN"
XX
SQ   Sequence 4554 BP; 1399 A; 899 C; 773 G; 1482 T; 1 other;
     aagtttctga agggatgtgt gattgctagt gcacagtgaa gtggttctca tcttccggct        60
     agtttcctga ttttaatcgg cttcatctat ggttgcatta atctgaagcc tgaagacgag       120
     caattgtggt agctgttcca tctgaagttt cacttcaatt cgtcgccgat ttttctacaa       180
     accggttcgc aaaatcttgt agaacctact actagcaaca attgtttctg tgaaacccct       240
     tcagcaagtt cagtattggt tgtatgatac gtcatacctg tcaacttgac gttgccataa       300
     aaacaatgga tactcctatt tacaatgatt tgctgaacaa tgtacacaag tttgacgagc       360
     tctgcgaaaa gatgcaactg atgttccaga aagttcaaga caacattgca tctaaaatca       420
     atgcttacca gcatgaactc agtgagagga tcaactgcat tgaggcccgt atttcgacta       480
     tccgtaatga gagcatagcc aacgtcgaac aaatgatcga gagtgtgaaa aaagttcgct       540
     cggattcatt gtttatcaac gataagctac agttcgtcaa cagaagcaag gaactgatca       600
     tttcgggggt tccaaacgat gtaaacaaga acctgtatga aattttccgc agtatcgcca       660
     aacgtctggg atataaggat gaagatgtac ctgttgtcga tttggatcga ttaccttcaa       720
     catcatcaga taaatccttc atagtctgcc gtttcgcact ccgtactagt agatacaagt       780
     ttttcaaaag ctatctgtcg gatttgtccc tttgcttaaa ggatattggc tactctccga       840
     accccaacga taccaatgga agtctgtccc gtatattcat caatgaaagc ctatcaaaac       900
     gagtacgaga tattagatct acagcaatga ggatgaagaa agctggactc atcgagaagg       960
     tgtcgatcag agacggcgag gttctggtga agctgcacaa gatggatccg tttcttccct      1020
     gtcgtaccaa gcaggcgctt ctagaaactc taaacctttc caaataagtt tctcttctcc      1080
     tgcccagttt cttcccatgt tgcctctcct ttcattccat gttatcttcc cctcctgaaa      1140
     gttatagaat actgatttgt acctttcctc attatgctct ttatccttat caaaatttct      1200
     tcctgtgttt cccatcctgg ttttcccatg attattcctt cctgaaagtc aaatcatatc      1260
     aacggaaatg catggcaact gttgatggcc tatctggttt gtgatctgct gctgctgctg      1320
     ctgttgctgt tcggtcagtt gctgtgctgt tgttgctgtt gcttgccgat ctatatattt      1380
     acactttctg ccggaatacg atgacaacca ttcattcaga agctttgcta tggattcaat      1440
     tgatttgtta attcttggta gttataagtt cctgcgtgct gttgtgtttg ttatgcgttc      1500
     tctcatctct tggataggtg ttcgtttttg gctcggtgtt tgtactatag aagattatgg      1560
     ctagttcacc aattgacaat acctcttcaa gcagcatcat tactaaagcg gtgatggatt      1620
     cagtttttag gactgataaa ttaaatatat gccatattaa tgttcagagc gtttgcgctc      1680
     gagggttttc caagtttgat gaattgaaag cggtgttttt caacagtaaa gctcacatcg      1740
     tctgtatgtc tgaaacatgg ctcaatgaat caatcaatga ttcgatgatt cgaattgagg      1800
     gctacaatct aattcgtaac gatcgaaacc gccatggtgg tggactatgc gtctacttta      1860
     ggcaaaatct aagcttgaag ctcctaaaaa agtctacttt tagtccgtat gaacctagtc      1920
     atattaccga atatttgcta tttgaagttg ctacaagcaa tcgcaagttt tttcttggtg      1980
     tatactacaa cccgccgaat aacgattgca gtaatttgat ttttgaacat ctcgaggagt      2040
     tcaaaatgaa atacgatttg acgttcatta cgggggattt taacacagac ttaaaaaaag      2100
     ttacacctag gaccaacaga tttacagatg ttttatctaa cctgtcatat gtttgcttaa      2160
     atcaagaacc aacttatttc catacaaccg gttgctcttt acttgacctt ttcattattg      2220
     attctccgga gattgtcttc agaattaacc aggtatctat gcctggtata tccagacatg      2280
     atatgattct tgcagttcta gatattttct ccgattcatc cgaacaaggt ttcttccatc      2340
     gtgattacaa aaactttgac agtcaaggat tattaactgc ttttaataac atagattgga      2400
     attatttcca tagtataagt gattctgata tgttgattca cattctgaat gaacacttcc      2460
     aatatttaca tgaagaattt ttccctctta agttcagtaa atacagaaaa aatccttggt      2520
     ataatgaaga cattgaaaag gctataattg atagggattt agcttacaga aactggaagg      2580
     ccagtcgctt acaatctcat aatcttcttt tcaaaacact gagaaacagg gtaactacaa      2640
     ttatcaggaa tgcaaagaga agttattaca atcagcggat caatacaaat gttcccagta      2700
     agcaactctg gagaaacatt aaaagtttag gaatagccaa caaaaaacaa tcttctgtga      2760
     attgtgatac aacagctgat gaaatcaatg ctttcttttc agaaaattac tcttctgatg      2820
     aaaatcctcg tttaaactta aactacggtc cctttggttt tagatgtgta gaagaatttg      2880
     aaatagttaa tgcactgttt tcaattaagt ctaatgccag tggtctagac aatcttccaa      2940
     tagaattttt caaaattatg cttccactag cccttccact ttacactcat ttgttcaata      3000
     caatcattac aacttccaaa tttccacaag cttggaaata cgtaaaagtg attccaataa      3060
     aaaagaagcc tcgttcaact agcatttcaa acctcagacc cattagcata ttaaatgcac      3120
     tttccaaagc ctttgaaaaa atagtttctg ctcaaatctc tgattatgtg aacagaaata      3180
     atttcttgag tccctttcaa tcaggttttc gccgaaacca cagtactgag acagctttga      3240
     tgaaggtgca tgatgatatt gcttcgtcaa ttgataaaaa agggatagca gttctcttgt      3300
     tgatagattt tgcgaaagcg tttgatcgtg tttcacatag aaaactgttg aataaacttg      3360
     gtgctctttt tggattctcc cgtcctgctg tcaaattaat agaaacttat cttacaaata      3420
     gataccaatc cgtttttttc aatagtcaat tctcttcttt acgtccaatt gattcagggg      3480
     taccacaagg atctatttta ggaccccttc ttttttccct tttcataaat gaccttccak      3540
     ccgcattaaa attctgctca gtacacatgt tcgccgacga cgtacaaatt tatttctgtg      3600
     ctgattctag aacaagtacc atggaaatgt ctaggttaat caactacgat ctacaacagg      3660
     tgtttcagtg gtctcaagag aatctactgc ctattaacac aactaaaact aaagcagtat      3720
     ttattaatcg gcatcgacga tcccactttt ctatgcctga acttatcatg aataatgagc      3780
     aaattcaatt cgcagaccaa gtgaacaatt taggagtcat ttttaattct aaattagatt      3840
     gggaacctca aataaattca caagttggta aaatatacgg tattctaaaa cagctctcac      3900
     ttactactaa tcatctcagc tatcaaatga aaatcaaatt gttcaaatcc cttatttatc      3960
     cacattttat ctataatgac ttcatttatt tgaatgctac cgcaaacagc ttaaataagc      4020
     ttcgtgttgc actcaattcc tgcattcgat ttgtttttaa cataccaaga tttggtagtg      4080
     tcacccatct tcaaacatct ttaattagct gtccttttga tcagtttctc aaatatagat      4140
     cgtgctgtca tatttacaaa atactcacat ctggtaatcc tggttatcta tcctcaaagt      4200
     tgaatccatg tagaaacacc agaacaagaa gtcttcttgt tcctttacat cataccagtt      4260
     attatagtca ctcgctgttt gtaagaggta taattaattg gaattaccta ccattgaatc      4320
     taaaattatc cgttaatttt tcgagcttta aacgggacct actcttggag ttgaattgag      4380
     cgcactaaac aagcacacag caattaatta atagtaaaat caatagaact attacatgaa      4440
     taagaaatag cacatcctac tcaatatcta caaattgtaa catttaaaaa gattgtaaat      4500
     cttgcgttac atgaatgaag tataaataaa taaataaata aataaataaa taaa            4554
//
ID   Kiri-22_AAe repbase;    DNA;    INV; 4509 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-22_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4509
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 717-717 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           273..1049
FT                 /product="Kiri-22_AAe_1p"
FT                 /translation="MMSRRDTTVSKRVGNVKTGEVYNDDTDEMTISQLASS
FT                 ISEQLTNTKREISQQLYDEVRGLKKTIKTDLEEMRSALEKSVSELSRCVDL
FT                 NKESIQHNAHAISRSHLRNDLVISGVPFVQGENLREYFEKWCQALGFNNND
FT                 HPSVDIRRLHKSVMVPGKSYMILVQFAITNHRKDFYFKYLQSRSFTLDQLG
FT                 FSSRDRIFVNENLTVTARSIKSKALLAKKNGKLYSVITRDGIIYVKKTSES
FT                 ESRRVETEDELLKITQTC"
FT   CDS           1527..4352
FT                 /product="Kiri-22_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASMILNNASTNICLPGAVVKAALIPEKLSICCLNMQ
FT                 SMCARQMTKFEEFSQILNISEVDVACVCETWLNETKSSDMIKVEGYHTLRS
FT                 DRVGKIGGGLLIYVKKSLKYKLLECSFVETRRKTIEFMFVELSTASDKILL
FT                 GLFYNHPDLDCSDLISDKMIEYGTHYNNLILIGDFNTNIMKASPKSNRFKD
FT                 TLMSLSLFNVGLEPTFFHPTGASQLDLMLTDNVENVLRFNQISVPNISHHD
FT                 LIFASLDFDTTKTNNDVFYRDYKALDPEIVLNKFNESDWERFYSITNPDVL
FT                 IDMFNNTLNSIHEECVPLRKVRKSKNKVNPWFNSQIQIAFIDRDRAYKKWK
FT                 HSADSDDFARYKILRNLSNRLVTQAKRSYYNAQFSGEMTTKDFWHRIRHTG
FT                 LGKPNSNIESDFNADEINASFQRHFTSQIRTITHDPRNNNDRRFAFQPVRI
FT                 FEIINAVHEVKSNAIGLDNVPIKLIKSLLPLLLAPLSHIFNNIIESCVYPQ
FT                 VWKLTKIIPFRKKSNVCSLNNLRPISIISAISKAFERILKNQICCFIHENN
FT                 MLSSLQSGYRSGHSTKTAMLKVCDDIGVVLDRDSKVVLVLLDFSKAFDTIS
FT                 HSIMCHKLENLFNFSRNAVILIHSYLNNRQQAVFCNNTLSSFLPVSSGVPQ
FT                 GSVLGPILFSLYINDLPNVVKYCSLHLFADDVQLYLDCTKKSIEEITRLVN
FT                 FDLEAIRFWSLENTLKLNATKTYGIMISRETNVEKPLLRIDNESIEFVDSA
FT                 NVLGFTIQNNLKWDKYVLKQCGTIYAYLRVLYANGNLLNRSTKIKLFKSFI
FT                 LPHFISSDFLIGSTSVHVQSRMRIALNSCIRFVFNLRRLDPVSHLQPMLLG
FT                 YSFQNFIKARCCILLHKISTTKMPGYLYDKLRPFHSPRAKQFIIPTHFSSA
FT                 YGKTFFVRGVVLWNSLPNYMKNQQSVSVFKKQCQEYFN"
XX
SQ   Sequence 4509 BP; 1438 A; 860 C; 832 G; 1379 T; 0 other;
     ttgagtgact gtggtatgga gtggtagtaa tattcttgct cgcgatgcta attgcttgaa        60
     atcgtgaaaa acgctctaaa tatcctccta gtgaagttag atactcacgt catattatat       120
     accacaaagg gaaagcggtg cacctagcca aaattcttat atctctgtga tattggctgg       180
     aaaataatcg tcagaatcac tgtagttatc gtcgacgcca ttacgctgct acttgtttcg       240
     atatccaacc gaagagaact gctgagttcc aaatgatgtc gaggagagat acaacagtgt       300
     ccaagcgcgt gggcaacgtg aagactggtg aggtgtacaa cgacgatacc gacgaaatga       360
     ctatctccca attagctagc tcaatatcgg agcagctaac caacaccaag agagaaatat       420
     cgcaacaact gtatgatgag gttcgtggtc ttaaaaaaac catcaaaact gatttggaag       480
     aaatgcgctc tgcactggag aaatcggtat ccgagctaag ccgctgtgtt gatctaaaca       540
     aggagagcat acaacacaat gcccatgcta tatcacgttc tcatctacga aatgatctcg       600
     ttatcagcgg agtaccattc gtgcagggag agaaccttcg cgagtacttt gagaagtggt       660
     gccaagcatt gggatttaac aacaatgatc atcctagtgt ggatatccgc cggctgcaca       720
     aatcagttat ggttcccgga aaaagctata tgatactggt ccaatttgcg atcacaaacc       780
     atcgcaaaga tttttacttc aagtatttac aatcaagatc gtttacattg gatcaactag       840
     gcttctcttc gagggacagg atttttgtca acgaaaacct gaccgtcact gctagatcta       900
     tcaaaagcaa ggctctcttg gccaagaaga atgggaagct gtattcggtc atcacgcgag       960
     atgggattat ctacgtcaag aagacctcag agagtgagag ccgccgggtg gaaaccgaag      1020
     atgaactact gaagatcaca caaacatgct agacctttcc taataagcca tctctttcct      1080
     tgttgatacc atccttgaat tatcccatgt ttccaatcct aaaagtcaag atttaattaa      1140
     aaactgcctt tcctgcgaag tggcctctgt ccttccaatc cttcctgact atagtccatg      1200
     tatccactcc taaaagttgt tgctgttgtt gctgttgggt tggatcggag aggatgacat      1260
     cattgctgtt gctgctgctg ctttgtgtgc aattcgtaat atgaaattta atgaatggaa      1320
     gaaccatacc gtacgtttgt gcaaaattat actcttgttg aaaattgttt gcattgtaaa      1380
     ttcactagat tagttgcatt tcaagtctat tggcatcgcg aaaacgaaaa tggaaattaa      1440
     tatgtttaat ttagtagact gtagttatat gattcttgac cagttgattg ctttgcattg      1500
     ctcattgaac acaattatca gagataatgg ctagtatgat cctaaacaac gcctcaacaa      1560
     atatatgttt gccgggagct gttgtcaagg cagctctcat tcccgaaaag ctttctattt      1620
     gttgcttaaa catgcagagt atgtgtgcta gacaaatgac aaaatttgaa gagtttagtc      1680
     agattttgaa tatctcagag gttgacgttg catgtgtttg cgaaacctgg ctgaatgaaa      1740
     cgaaatcaag tgacatgatc aaagttgaag gttaccacac tttgagaagt gatagagtgg      1800
     ggaaaatcgg tggaggactc ctaatttacg tgaagaaatc tttaaaatac aagcttttag      1860
     aatgttcctt tgtagagacc cgcaggaaaa ctatagaatt catgtttgtt gaactttcca      1920
     ccgcaagtga taaaatatta ttaggtctgt tctacaacca ccccgacttg gactgttccg      1980
     atcttattag tgacaaaatg atcgaatatg gcactcacta taataatttg attctgatag      2040
     gagatttcaa tacaaatatt atgaaagcaa gtcccaaatc aaatcgcttc aaagataccc      2100
     ttatgtctct ttcactattt aacgttggac tggaacctac cttttttcac cccactggtg      2160
     cttcccaact agatcttatg ttaacagaca acgtagaaaa cgttcttagg ttcaatcaaa      2220
     tcagtgttcc caacatatcc catcacgatc ttatcttcgc ttcgcttgac ttcgatacta      2280
     cgaagaccaa taatgatgtt ttttatagag actataaggc acttgatccg gaaattgttc      2340
     tcaacaaatt taacgaatct gactgggagc ggttttattc aatcactaat cctgatgtat      2400
     taattgatat gtttaacaat actttgaatt caatccatga agaatgtgtt cctctacgta      2460
     aagttagaaa atctaagaat aaggttaacc cttggttcaa cagtcaaatc caaatagctt      2520
     tcatagatcg agatcgagct tataaaaaat ggaagcattc tgctgattca gatgattttg      2580
     cacgctataa aatacttaga aatttatcaa atcgactagt gactcaagca aagcgaagtt      2640
     attataatgc gcaatttagt ggagagatga caacaaaaga cttctggcac agaattcgtc      2700
     atacaggatt aggtaagcca aattccaaca tagaaagcga ttttaatgca gatgaaatta      2760
     atgcttcatt tcaaaggcat tttacatcgc agatacgcac tattacgcat gatcccagaa      2820
     ataacaatga cagacgtttt gccttccagc cggtgcgaat tttcgagatt attaatgcag      2880
     tacatgaagt aaaatcaaat gcgattgggc ttgataatgt tccaataaaa ctgataaaga      2940
     gtctactacc attgttgttg gcaccccttt cacatatttt caataatatc attgaatcct      3000
     gtgtttaccc tcaagtgtgg aaactaacaa aaataatccc attcaggaaa aaatctaacg      3060
     tttgttcatt gaacaactta cgacccataa gtataataag cgcgatatca aaagcatttg      3120
     aacgaattct gaaaaaccag atatgctgct ttattcacga aaataacatg ctatcatctt      3180
     tgcaatctgg ttaccgtagt ggtcatagta ccaaaactgc gatgttgaaa gtttgtgacg      3240
     atataggcgt cgtattagat agagatagta aagttgttct tgtactttta gacttttcga      3300
     aagcatttga tacgatctcg cactctatta tgtgtcacaa attagaaaat cttttcaact      3360
     ttagcagaaa tgcagtaatt ttaatacatt cttatctcaa taatcgccaa caagctgttt      3420
     tctgtaacaa tactctttcc agtttccttc ccgtttcctc tggtgttccc caagggtctg      3480
     ttcttggccc tattcttttt agtctttata ttaatgattt gccaaacgtt gtaaaatatt      3540
     gttctcttca cctttttgca gatgacgttc aattatattt agactgcacc aagaaaagta      3600
     ttgaagaaat cacaagactg gtaaattttg acctcgaagc aattcgattt tggtcactag      3660
     aaaataccct caaactaaac gcgacaaaaa cttatggtat aatgatcagt cgagaaacca      3720
     atgtagaaaa acctttactg agaatcgaca atgaaagcat cgaattcgta gattcggcaa      3780
     acgttctagg gttcacgata cagaataatc tcaagtggga taaatatgtt ttgaagcaat      3840
     gtggtacaat ttacgcttac cttcgagtat tgtatgcaaa cggaaatttg ttaaatcgct      3900
     ctaccaaaat aaaactattc aaaagcttta tcttgcctca tttcatatcg agcgatttct      3960
     taatcggctc tacctctgtt catgttcaga gtagaatgag aatagctttg aattcttgta      4020
     ttcgctttgt ttttaatctc cgtagattag atcctgtttc gcacctgcaa cctatgcttc      4080
     tgggatactc gtttcaaaat tttataaaag ctcgctgctg catattattg cataaaataa      4140
     gcacaaccaa aatgcctggg tatctctatg ataaactccg accatttcat agtccaagag      4200
     caaaacaatt tatcattcct acgcactttt cctccgctta tggcaaaaca ttttttgtta      4260
     gaggtgttgt tctgtggaat tcattaccga actacatgaa aaatcagcaa tctgtgtctg      4320
     tgttcaaaaa gcaatgtcag gagtatttta attagtcaag aatcaaaatt gtgtatttta      4380
     ttgtattttt gtttatgttc tttgatgaga tgtttaaaaa tccatgccag tatgctgtgt      4440
     agcatttaaa aagacattag tcttaagcta tcggagaaat aaaaatcaaa tcaaatcaaa      4500
     tcaaatcaa                                                              4509
//
ID   Kiri-23_AAe repbase;    DNA;    INV; 4456 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-23_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4456
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 718-718 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           255..1034
FT                 /product="Kiri-23_AAe_1p"
FT                 /translation="MSEEDVNSMRLRSNSVSQQRNTSTPDMTVADLAKLVK
FT                 SQFASFQRSTKDDIQKMGDKLSSQITQLRSELTSDIDKLREETNKTVSELV
FT                 SSVEGTKTDVSHMVDRSTKRNDLIISGVPYTQGENLCSYVQAWCRSLGYPE
FT                 NNIPLVDVRRLSKPGVTLGAAPIILLQFAFNTQRNEFYSRYLRSHNLSLSQ
FT                 IGFSVNKRVYINENLTPIAREIRSKALQLKKNDKLQAVYSRDGIVFVKPMN
FT                 GGAGKAISSIHDLELFTSR"
FT   CDS           1472..4297
FT                 /product="Kiri-23_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFLTMDNLNTNDTTTNWCTPGIVMKSAFYPGKLSICC
FT                 LNGQSICARRLSKLDELRRIVAASNVDVICINETWLNDNIDDSVIMLDGYQ
FT                 SIRCDRVGRLGGGVMMYIKNTIRYNVIETTSCDNVARTEFILVELILVNFK
FT                 ILLGTVYNPPDADCSLVLDELLNKYGSFYDHIHFLGDFNTNMLLDSPKAMR
FT                 LRELLVTHHLYNIGSEPTFFHGSGSSQLDLHISNSFSEVLRFNQIEAPVFS
FT                 NHDVIFSSLNFDTAHMDNVISHRDYSRINSDRLKHDIESINWAYFYSINSP
FT                 DTLTNLLNSHLECLLDRHAPLKNVPLRKMYNPWFNSYIGRAMVDRDLAFKQ
FT                 WKVTRDVTHHNLFKQLRNKVNLLIRKAKEIFYGEQLNSGLSSTELWKRLKS
FT                 FNMSNTTPESTNNFTADEINDCFYKNFSSSIDSTPCSTGSAWGSFHFSEIS
FT                 DVDVINSLYEIKSNAVGLDNIPLKFIKMVSPLIINPIVHLFNAILRSSQYP
FT                 TAWKKAKIIPIKKKASINSINNLRPISILCALSKVFEKIIKKQICGYINEH
FT                 NMLSCYQSGYRAKHSTKTVMLKVLDDIGIILDQGKPVLLVLLDFSKAFDTV
FT                 SHSIMCRKLRQIYGFSFDAVNLIKSYLENRFQTVLNNGVFSKFLHTASGVP
FT                 QGSILGPILFSLYINDLPSILKHCYVHIFADDVQVYIEHSDASVRKINEDL
FT                 DSIFKWATKNKLSLNTNKSHAMFIGTSNQRQMKPDIKLNNVSLKYVETAVT
FT                 LGFNIKSNFEWDSVILSQCGKIYAKLRTLQLKAAFLKTEVKIKLFKSLILP
FT                 YFIACDLWLMQSSAFAVQKMRVALNNCVRFVYGLGRMSHVSHLQHRLIGCS
FT                 FDNFCKTRCCLFMFNLVNNKMPGYLFEKLSVFRGSRSKKFVIPRHRTAKYG
FT                 GTFFVRGVAFWNSLPNDVTMIQPSGLVNFRRRIFEHFE"
XX
SQ   Sequence 4456 BP; 1381 A; 818 C; 796 G; 1459 T; 2 other;
     agtgagtgac gttggtgggc tatgacgttt gtgtgaactg cagtgcatca cagtcaacaa        60
     aaagtgctat tttcgttacg taaaatcacc aaccatcgat gaatcactag attgcaacaa       120
     cttcaaagtt gtaccgttga actataccgt ctcaaccacg atttacggtt tatttttgct       180
     ggattcgtta catctacagc cagtctggga tatcttcagc catctttttg tgtttatcgc       240
     tcgttaacat caatatgtcc gaggaagacg tgaactctat gagactcaga agtaactctg       300
     tctcacaaca acggaataca agcactcccg acatgactgt cgccgatcta gcgaaacttg       360
     tcaaatcaca gtttgcgtcg ttccagagga gtacgaagga tgatatacag aagatgggtg       420
     acaagctctc gtcacagatc actcaactgc gctctgagct cacttctgac atagacaaac       480
     ttcgcgagga aactaacaaa actgtaagtg agcttgtttc atccgtcgaa ggaacaaaaa       540
     ccgatgtttc tcacatggtg gatagatcta caaagcgaaa cgatcttatc atcagcggcg       600
     tcccgtatac ccaaggagaa aatctctgca gctacgttca ggcttggtgt cgttctctgg       660
     gttaccctga aaataatatc ccactggttg atgtacgtcg attgtcgaaa cccggagtga       720
     cattgggagc ggcaccaatt attctgctcc aatttgcgtt taacacccag agaaatgagt       780
     tctattctcg ctatttgcga tctcacaacc tctctttatc gcaaatcggt ttttcggtca       840
     acaagagagt ttacataaat gagaacttaa caccaattgc cagagaaatc cgctctaagg       900
     ccctgcagtt gaaaaagaat gataaactcc aggcagtcta ctcaagggac ggaatcgttt       960
     tcgtgaaacc gatgaatgga ggagcaggga aagcgatttc atctatacat gatctggagc      1020
     tgttcacatc acgctgatta accctatcca atgctattcg ttttcctgtc actcctttcc      1080
     ttgcaaatcc atgtatcctt ttccttttta tcagattatg ttatacctct ccgaaaaagc      1140
     ttttcttttt cctaccaatc cgatcccaac gttattcctt gtatccttcc tgaaagttac      1200
     ttcatcaaca gctgttgcta ctggatggtg cactacatgg agacaaccgt gcatggatga      1260
     cgatgacttg caagcagata tcatgtgtga ttattatgct atgttgatca gtgttgctag      1320
     tttgttggtg gtttttttat ttgatttgct aaagagaata ctttttgttc atgtgatttt      1380
     ttgtgaataa tgtatgtttt tgtgaatatt gtttgttttt cttttatcag tatagtgctc      1440
     aaaatgtttt tccttcttca gtttgctgtt catgtttttg acaatggata atctcaacac      1500
     taatgacact accacgaatt ggtgtacccc aggaatagta atgaaatccg cgttttatcc      1560
     tggaaaactt tcaatttgct gtttaaacgg ccagagtatt tgtgcccgta ggttatcaaa      1620
     attggatgaa ctgcgtagaa tagttgctgc atctaatgtt gatgttatat gcatcaacga      1680
     aacttggctc aatgataaca ttgatgacag tgttataatg cttgatggat atcagtcaat      1740
     aagatgcgat agagttggtc gtttaggagg aggtgtgatg atgtatataa aaaatactat      1800
     tagatataat gtgatcgaaa caactagctg tgataatgtt gcccgtactg agtttattct      1860
     agtggaactt attctagtca attttaaaat acttttagga actgtatata atccaccaga      1920
     cgctgattgt tctctagtat tagatgaatt gctaaataaa tatggcagtt tttatgacca      1980
     tattcatttc ctaggtgatt tcaatacaaa tatgctactg gattcaccta aagctatgag      2040
     actacgtgaa ttgcttgtaa cacaccatct ttacaacatt ggtagtgaac ctactttttt      2100
     tcatggaagt ggctcttcgc agttagacct ccatatatca aacagttttt cagaagtttt      2160
     gcgattcaat caaattgaag cacctgtttt ctcgaatcat gatgttattt tcagttcgtt      2220
     gaactttgac acagcgcata tggataatgt aatatcccat cgtgattaca gtagaattaa      2280
     ttctgatcgt ttaaaacacg atattgaatc cataaattgg gcttattttt attcaatcaa      2340
     tagtcctgat acacttacta atttgcttaa cagccattta gaatgtcttt tagatcgcca      2400
     tgcaccattg aaaaacgttc cactgcggaa aatgtataat ccgtggttca atagttatat      2460
     aggcagagcg atggttgatc gtgatttggc ttttaagcaa tggaaggtta cacgcgatgt      2520
     cacgcatcat aacttgttca agcaactgcg taataaagta aatcttctaa ttcgtaaagc      2580
     caaagaaatt ttctatggag aacaattaaa ttctgggtta tcttcaactg agctatggaa      2640
     gagacttaaa tcatttaata tgtccaatac aacacctgaa agtactaata attttactgc      2700
     tgatgagatt aacgattgct tttacaaaaa tttttcaagt tcaattgatt ctaccccatg      2760
     tagtactggt tcagcgtggg gttcttttca ttttagtgaa atcagtgatg ttgatgttat      2820
     caactcttta tacgaaataa aatcgaacgc tgttggactc gacaatatac cccttaaatt      2880
     tataaaaatg gtttcacctc tgataattaa cccaattgtt cacttgttta atgcaatctt      2940
     aagatctagt caatacccca cggcatggaa aaaagctaaa ataattccta taaaaaagaa      3000
     agcttcaata aactcaatta acaacttacg ccccattagc atactttgcg ccctatcaaa      3060
     ggttttcgaa aaaattatta aaaaacagat ttgtggttat attaacgaac acaatatgct      3120
     ttcatgttat caatctggat atcgggcaaa gcacagcaca aaaacagtga tgcttaaggt      3180
     actggatgat attggtataa ttttagatca aggaaaaccg gtgctgctag tcctattgga      3240
     tttttctaaa gccttcgaca ccgtttccca tagcataatg tgtagaaaac tacgacaaat      3300
     atatggattt tcttttgatg cagtgaatct tataaaatca tatttagaga atagatttca      3360
     aacagttctc aataatggag ttttttctaa attcctacat actgcctcag gggtacctca      3420
     ggggtctatw ttgggtccaa tattattttc tctatatatt aacgatcttc catccatctt      3480
     gaaacactgc tatgttcaca tttttgcgga tgatgtacaa gtatacatag aacactccga      3540
     tgcttccgtt cgcaaaatca atgaagacct agattccata ttcaaatggg ctacaaaaaa      3600
     taaactttcg ttgaatacta ataaatcaca tgctatgttt ataggtacca gtaatcaaag      3660
     acaaatgaaa cctgatataa aactcaacaa tgtatctcta aaatatgtgg aaactgctgt      3720
     gactcttggt ttcaatatta aatctaattt tgaatgggat tctgttatct tgagtcaatg      3780
     tggaaaaata tatgctaaat taagaacgct ccaattaaaa gcggcattcc ttaaaacgga      3840
     agttaaaata aaacttttca aaagcttaat tttaccttat tttattgcat gcgatctttg      3900
     gctcatgcaa tcatctgcat tcgctgtaca gaaaatgcgt gttgcgctca ataactgtgt      3960
     acgttttgtg tacggtctag gaagaatgtc tcatgtatct catttacagc atcgtttaat      4020
     aggctgctcg tttgataatt tttgtaaaac gagatgctgc ttatttatgt ttaaccttgt      4080
     waacaataaa atgcctggtt atttatttga gaaattgtct gttttccgag gaagtcgatc      4140
     caagaaattc gttattccac gtcatcgcac tgctaaatat ggtggtacat ttttcgtgag      4200
     aggtgtcgct ttctggaatt ccctacccaa tgatgtaacc atgattcaac ctagtggatt      4260
     agtaaacttt agaaggagaa tttttgagca cttcgaataa gataccagta atttcattat      4320
     ttgtaaatct aaatcaaaat tattcagtaa actcaatgtc aaatccacca tttacctaga      4380
     atgtaacatt ataagatgtg aatcttgagt tacgtatttg aataaataat aataataata      4440
     ataataataa taataa                                                      4456
//
ID   Kiri-24_AAe repbase;    DNA;    INV; 3027 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-24_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3027
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 719-719 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           74..454
FT                 /product="Kiri-24_AAe_1p"
FT                 /translation="MANNLIVNTSNNWNTQGIVMKSAFVPNKLSVCCMNSQ
FT                 SICARKMSKLEELRKIANVSNVDVICISESWLNERISDDVIKIENYSVIRN
FT                 DRVGRLGGGIIVYVKKQFNFKILDKXXLXLVKPNIFFSN"
FT   CDS           577..2898
FT                 /product="Kiri-24_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGDFNTNILNPRCDKSKKFVSFMENFSFSSLGTIPTH
FT                 FHRTGSSQIDLMITNKRESVLRFNQVDVPCMSNHDLLFASLDVDVLLSSAD
FT                 PVSYRDYSRFNPSTAISIFNQISWDEFYQSNNPEILLHFFNEHVKTMFDTT
FT                 IPVKTNVINRKCNPWFNAEVSRAIVDRDLAFRQWKTTRNDSDFEHFKRLRN
FT                 YATSSILNAKQRYWNSKIAGSGSVKNMWKNLKSLNITRKNDGFLMNCSPDD
FT                 INKHFSQSFXSPTRSFYTQNVNSSETFFRFNEIQDYHIINAIYEVKSNAVG
FT                 LDDIPIKFIKMILPLIMKPLKHIFNSIIKSGXYPKIWKYSKIVPIKKKSTE
FT                 NSLENLRPISILSAISKAFERLLKNQITCYLSGNNLLSQYQSGYRKGHSIK
FT                 TAMLKVCDDIGLVLDKGGSVVLLLLDFSKAFDTISHVKLCNKLEQNFGFSY
FT                 DAVRLIHTYLTDRNQTVFVNDCFSNYLPILSGVPQGSVLGPLLFSIYINDL
FT                 PLRLNGCQIHLFADDVQIYVNVSGMTSDAAAYLINDNLSRISSWASENSLM
FT                 LNARKTQACYITRQSRSHDKPTLSLNGIPISYADKVVSLGVTIQSNFEWDS
FT                 FILKQCGKIYSVLRTLRYNTDFLKTDTKLKLFKSLMYPHFLFCDFVTTQLS
FT                 ANILHKLKVALNCAVRFVYNLNRYAPVTHLHKSLIGCSFNNFPLVRSVFLL
FT                 HTIVTKKCPAYLHRKLIRLRSPRGIKFSMPRSITSYYASSLLVRSIYNWNS
FT                 LPAEFRSIVSSSHFKKSVLQQVN"
XX
SQ   Sequence 3027 BP; 984 A; 517 C; 498 G; 1016 T; 12 other;
     attaaaactc gatwttmaag tgcgtaggct tktaaatgtt ttcttgactt gtaattgctt        60
     ttcgttaact attatggcta ataatttgat tgtcaatact tctaataatt ggaatacaca       120
     aggtattgtt atgaagtctg cctttgtacc taacaaatta tcggtttgtt gtatgaacag       180
     ccaaagtatt tgtgcaagga aaatgtcaaa acttgaagaa ctgcgtaaaa tagccaatgt       240
     ttctaatgtg gatgttatat gcatttctga atcttggcta aatgagagaa tatccgatga       300
     tgtcatcaaa attgaaaatt attcagttat cagaaatgat cgcgtaggac gcctgggtgg       360
     cggcataatt gtgtatgtta aaaaacagtt taatttcaag attctcgata aatmwasstt       420
     gwttctggtg aaaccgaata tatttttctc gaactagtag ttaacaatca aaaacttctt       480
     ttaggtttct tttacaatcc tcctgagttt gattgttcgc aactgctagc ccaaaaattt       540
     tctaattttg aattccaatt cgaacatgtg ttgttaatgg gtgatttcaa tacgaacata       600
     ctcaatcctc gatgtgacaa aagtaaaaaa tttgtttcat tcatggaaaa tttttcattt       660
     tcatctcttg gaactatacc aacacacttt cataggacag gctcttctca aattgatctt       720
     atgataacta ataaacgaga atcagttcta cgatttaacc aagttgatgt accatgcatg       780
     tcgaaccatg atttactgtt cgcatcttta gatgtggatg ttctgctatc cagtgccgat       840
     ccagtgagtt acagagacta cagcaggttc aatccttcca ctgctatatc tatatttaat       900
     caaataagct gggatgaatt ttatcaatca aataatccag agattttatt gcattttttc       960
     aatgagcacg tgaaaacaat gtttgatacc actatacccg tgaaaacaaa tgtgataaac      1020
     cgtaaatgca atccctggtt caatgctgag gtatctagag caatagttga tcgtgactta      1080
     gcttttcggc aatggaaaac aacaagaaat gacagcgatt ttgaacattt taaaaggcta      1140
     cgaaattacg ctacttcatc aattctgaat gctaaacagc gttactggaa ttctaaaatt      1200
     gctggctctg gcagtgttaa aaatatgtgg aagaacctaa aatctttgaa cattacaagg      1260
     aaaaacgacg gttttctaat gaactgcagc cctgatgata ttaacaaaca tttttcccag      1320
     agttttwgtt cacctacacg atcgttttat acccaaaatg ttaactcgag tgagacattt      1380
     ttccgattca acgaaattca agactatcat attataaacg caatttatga agtgaagtcg      1440
     aatgctgtag gtcttgatga tatacccata aaatttataa aaatgatact tccgctaatt      1500
     atgaagccat taaagcatat tttcaatagt attatcaaaa gtggtwtmta tcctaaaatt      1560
     tggaagtatt ctaaaatagt accmattaag aaaaaatcca cggaaaactc actggagaac      1620
     cttagaccta tcagcatttt aagtgcaatt tcaaaggctt ttgaacggtt gttaaaaaat      1680
     caaattactt gttatctatc tggtaacaat cttttatcgc aataccaatc aggttaccgc      1740
     aaaggacata gcatcaaaac ggcaatgtta aaagtatgcg atgatatcgg tcttgtttta      1800
     gataaaggag gatcagtagt tctcttgttg ctcgacttct ccaaagcctt cgacaccatt      1860
     tctcatgtta aactttgtaa taagcttgaa cagaattttg gattttcata tgatgccgtt      1920
     agacttattc atacatatct tacagatagg aatcagacag tttttgttaa tgattgtttt      1980
     tctaattacc ttccaatttt atcaggagtt cctcaaggat ccgtgttagg tcctttatta      2040
     ttttccattt atattaatga tctaccgttg aggcttaacg gatgccaaat tcacttattt      2100
     gcagacgacg tccaaatata tgttaatgtg tctggaatga ctagtgatgc tgctgcatat      2160
     ttgatcaatg ataatttatc aagaatatca tcatgggctt cagaaaattc gttgatgtta      2220
     aatgctcgaa aaacacaagc gtgttacata acacgccaga gccgtagtca tgacaaaccg      2280
     accttaagtt taaacggtat accaatcagt tacgctgaca aagttgttag tttgggcgta      2340
     actattcaaa gtaactttga atgggacagt ttcattttga aacaatgtgg aaagatttat      2400
     tcggttttac gcacattacg atataataca gattttctaa agactgatac aaaactaaaa      2460
     ttgttcaaga gcttgatgta tccacatttc ttattttgtg attttgtcac cacccagcta      2520
     tctgcaaaca tcctgcataa actaaaggta gctctcaact gcgcagtaag atttgtatat      2580
     aacttaaaca gatatgctcc tgttactcac ctacacaaat cgttgattgg ttgttcattt      2640
     aacaattttc ccttagttag atccgtgttt ttactgcaca caattgtaac caaaaaatgt      2700
     cctgcatact tgcatcgtaa acttattcga ttaagaagcc ctagaggtat taaattttca      2760
     atgccgcgat ctataacttc atattatgct agttcccttc ttgttagaag tatatacaat      2820
     tggaattctt tgccggctga atttcggtca attgtttcct catcgcattt caagaaatca      2880
     gttttacagc aagtcaatta aaaattacat ttgatctgtt tctaatagtt tgattttttt      2940
     ttatggcgca cttcatgtta ccttagacaa actgaaacat aaaagacatg gtcttaagtt      3000
     tatggatgag taaaataaat aaataaa                                          3027
//
ID   Kiri-25_AAe repbase;    DNA;    INV; 3882 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-25_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3882
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 720-720 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           33..713
FT                 /product="Kiri-25_AAe_1p"
FT                 /translation="MRTMMQQFTETRELIATVRXEIHDVNIKIDTVKTELQ
FT                 XDIKAVRDECAAKFSQHDTALASLHERVDIVTQKIGALGNRNELIISGIPY
FT                 RTGENLDSMLKAIGRHLQVKETSTLMAESRRMISGRNSDTTGLIVVEFAIR
FT                 ATRDEFYSAYLRKRDLKLRHIGLDSDRRIYINESLTIEARKLKSRALHLKK
FT                 EGRLTSVYTKQGVLYVKPATNESSVVIQSERDLNEYT"
FT   CDS           888..3740
FT                 /product="Kiri-25_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLPPHNHTSTNIPGAVLNAALFPDQLNICHGNAQSLC
FT                 ARNSNKLDEVRNLLSNSKIEIACFTESWLSSKNSDRSISIPGYSVVRNDRV
FT                 FKRGGGIVVYYKEHLSCYKIFGTVLTSESLDKTECLALEFRVGGQKFMLMT
FT                 VYNPPGNDCSSFLADKLTDLSVRYDSIFLVGDFNIDLHRPSSKREQLEAIL
FT                 CAYSLTSISSEPTFFHNGGCSQLDLFLTNRTDKVLRFGQVSFPGLSHHDLI
FT                 FASMDFAISRPTGRYTYRDYTNFDSHALENAVLSIPWNRFYQMDDPNEAIE
FT                 FFYDHMKTVHDSCIPLRTGTRRHQHNPWFSDAVRQVLLERDLAYKDWLQAP
FT                 LHVKNAKRQRYKILRNRANTKITQAKQQYLNQFLNINVPSKTLWKRVKNLG
FT                 VGKDTTSKPCEFDPETVNRTFLANYIKSNHRASRPLRTTPPSPYNFSFRSV
FT                 QYWEVVNAIWDIHSNAVGTDDLPIKFIKIALPLIVHHITHLFNVFIRTSTF
FT                 PECWKHAKIIPLKKKAYMNDINNLRPISILCALSKAFEKLLKQQMTSYIED
FT                 NKLLSDCQAGFRRGQSIKSAVLRVHDDLGATVDKKGAGILLLLDFSKAFDT
FT                 ILHSKLLSKLEAQFNFSSPAIRLIESYLRGRKQTVFCGDHHSSSAEVSSGV
FT                 PQGSVLGPLLFCCHINDLPTVLKYCSIQIYADDVQLYVRRYGPSTRELVRM
FT                 INSDLQAVEDWSRRNSLYLNPAKSKAIYVTGNQRRASSFPVSPVVMNGQFI
FT                 EWSESASNLGFIFQSNLQWDALVAQQCGKIYASLRTLYNCTLAAPTATKLK
FT                 LFKSLILPHFLFGDVLHVHPSANSFERLRVALNCCVRYVFGLHRLDPVSHL
FT                 QQNLIGSTLRGFLAHRSCIFLRNLLTTQSPVTLYQRIIQTRGRRLNNLIIP
FT                 ANNTTCYARSLFVRGVVNWNKLPPEIKRSSSGAIFKRGCINFWNRNS"
XX
SQ   Sequence 3882 BP; 1123 A; 847 C; 802 G; 1107 T; 3 other;
     caatttcaaa ttcgttatcc ctggaatgcg tgatgaggac gatgatgcag cagttcacgg        60
     agacccgaga gttgatagcc actgtccgaw gcgaaatcca cgatgtaaac atcaaaattg       120
     atactgtcaa gacagagctt caakgcgata ttaaagcagt gagagatgaa tgtgctgcaa       180
     aattctcgca acacgatact gcgttggcat cgttacatga acgagtggat attgtgaccc       240
     agaaaatcgg tgctctaggt aaccgcaacg aactcatcat aagtggtatt ccatacagaa       300
     ccggagagaa tcttgattca atgctcaaag ctatcggtag gcatcttcaa gtcaaagaaa       360
     cgtccactct gatggcagaa tccaggcgga tgatttctgg tagaaactcg gataccactg       420
     gtcttattgt cgtcgaattt gcgatcaggg ctacacgaga cgaattctat agtgcttatt       480
     tgcggaagcg ggatctcaag ctgagacaca ttggactgga ttccgatcgt cgtatctata       540
     ttaatgaaag ccttaccatc gaagcgcgca aactgaagtc tagggcacta cacctgaaga       600
     aagaaggtcg actgacatcg gtgtacacca aacaaggcgt tctttatgtg aagcccgcaa       660
     ccaatgagtc atcagtcgtc attcagtcag agcgagactt gaatgaatat acatagcgat       720
     atttttcttt tttttccttt tgttttcccg tcacttttga agttaagttt atataattgt       780
     tccaaatttg ttgtattgtg agttgaagat tgtatgattg tgattaatgt tttatgtacc       840
     tctgtgataa tgcagccctc tgagaattgc ttcccatatt acacttgatg ttaccaccac       900
     ataaccacac ctccacgaac attccaggag cggtattgaa tgcagctcta tttcctgatc       960
     agctaaatat ctgccacgga aatgctcaaa gtctttgtgc acgtaactct aacaaacttg      1020
     acgaagttcg aaatctctta tccaactcca aaatcgagat agcatgtttc actgaatcat      1080
     ggttatcctc taaaaacagc gaccgtagca tcagtattcc ggggtactct gttgttagaa      1140
     acgatagagt tttcaagcga ggtggaggga tcgttgttta ctataaagaa cacttatctt      1200
     gctacaaaat cttcggcact gttctcactt cggaatcgct ggataaaacc gagtgtttgg      1260
     cattggagtt tcgtgtaggc ggtcaaaaat ttatgttgat gacggtttac aaccctccag      1320
     gaaatgactg ttcatctttc ttagcagata aactgactga tttgtctgtt cgctatgaca      1380
     gcattttcct ggtaggcgac ttcaacatcg atctgcatcg tccgagcagc aaacgtgagc      1440
     aattggaagc gattctctgt gcttattcat tgacatctat cagtagtgag ccgacatttt      1500
     tccacaatgg cggatgctcc caactcgatc tgtttcttac caaccgcacg gataaggttt      1560
     tgaggtttgg ccaggtcagc tttcctggac tgtcgcacca tgatcttatt tttgcatcga      1620
     tggattttgc catctctcgt cccaccggcc ggtacaccta ccgtgattac acgaattttg      1680
     actcccatgc tttggaaaat gctgttctat ctattccctg gaaccgtttt tatcaaatgg      1740
     atgacccaaa cgaagcaatc gaatttttct acgatcatat gaaaacagtt catgattcct      1800
     gcattcctct ccgtactggt accagacgcc atcaacataa tccgtggttt tctgatgccg      1860
     tacgccaagt gttactcgag cgggacctgg catacaagga ctggttacaa gccccattac      1920
     atgtgaagaa tgctaaacga caaagataca agatcctaag aaaccgtgcc aacacgaaaa      1980
     ttactcaagc taaacagcag tacttgaacc agttcttgaa catcaatgtc ccgtccaaga      2040
     ccctctggaa gcgcgtgaag aaccttgggg taggcaaaga tacaacatct aaaccgtgtg      2100
     aatttgaccc ggagactgta aatcgtacct ttttggctaa ctacataaaa agtaatcatc      2160
     gggcgtctag acctttaaga acaacaccac cttcaccgta caatttttct ttccgatctg      2220
     ttcaatactg ggaagttgtc aacgcaatct gggacataca ctctaatgca gttgggacgg      2280
     acgatttgcc gattaagttt attaaaatcg ctctgccatt gattgtccat cacataacgc      2340
     atttattcaa cgtattcatc agaacttcta cgtttcctga gtgctggaag cacgcaaaga      2400
     ttatcccact gaaaaagaaa gcttacatga atgatatcaa caatctgcga cctattagta      2460
     tactttgtgc attatcgaaa gcattcgaga agctgctcaa gcaacaaatg acatcgtaca      2520
     tcgaggataa caaattgttg tctgactgtc aggctggatt tcgtagaggc caaagtatta      2580
     aaagcgcagt tctgcgagta cacgatgacc taggtgctac cgtggataag aagggtgctg      2640
     gaatacttct tcttctggat ttttccaaag ccttcgatac tatccttcat agcaaacttc      2700
     ttagcaaact ggaggcacag ttcaactttt cttctcctgc cataagactg atagagtcat      2760
     acttgcgagg gagaaagcag acagtttttt gtggcgatca tcattcaagc agtgcagagg      2820
     tctcatcggg tgttcctcaa ggatcagtac taggccctct tcttttctgc tgtcacatta      2880
     atgacctacc aactgtattg aagtactgtt ctattcagat ttatgcagat gatgttcagc      2940
     tttacgtcag acgatatgga ccttccacga gagaactagt taggatgata aattcagatc      3000
     ttcaagcggt ggaggattgg tcacgacgaa acagccttta cttgaatcct gcgaagagta      3060
     aagcgatata cgtcacaggg aaccaacgga gagcttcaag ttttcctgta tcgccagttg      3120
     ttatgaatgg tcagttcatc gaatggtcgg agagtgcaag taacctaggg tttatttttc      3180
     aaagcaattt gcaatgggat gccctagttg ctcaacagtg tgggaaaatc tatgctagcc      3240
     tgcgtacgct ttataattgt actttggcgg cgccaaccgc aactaaactg aagctgttta      3300
     aatcgttgat tcttccacat ttcctattcg gtgatgttct acacgttcat ccaagtgcaa      3360
     attcctttga aagactccgt gtggcgctaa actgttgcgt acggtacgtg tttggattac      3420
     accgtcttga ccctgtaagt cacttacaac agaacctaat tggttctact ctacgaggtt      3480
     tcctggctca tcgatcttgc attttcttgc gaaacctgct aacaacacag tctcccgtta      3540
     cactgtatca gaggatcatt caaacccgag gtcgccgttt aaataactta ataattccag      3600
     caaacaacac cacatgttat gctagatcat tgttcgttcg aggtgtggta aactggaaca      3660
     aattaccacc cgaaataaag cgttcatcgt cgggggcaat tttcaaaaga ggctgcatca      3720
     acttttggaa ccgcaatagt tagagttaaa aatagtttat ttatttaaat aagaactgca      3780
     atagtataat agttatttct ttgcaaaacc ggaggtagca attttaaaag atttatatct      3840
     tacgctgctg gacaataaaa acaaacaaam aaacaaacaa ac                         3882
//
ID   Kiri-26_AAe repbase;    DNA;    INV; 3434 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-26_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3434
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 721-721 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..353
FT                 /product="Kiri-26_AAe_1p"
FT                 /translation="MLSVKSXRVRNLALRMKQKKLIQSVYVRNDSISIRLP
FT                 CQKKYIPIEDTGHLLKLMNASSCTNESSIFYDAESSHF"
FT   CDS           398..3238
FT                 /product="Kiri-26_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPNNCTNLRIGHLNVRGLECHADEMKILLDKNQYHFF
FT                 AVTETKMKASSSMGPVRVPSYNFXKHCLPAGRGRGSKSCGGIGLYFLKGLK
FT                 VSPVMKSTFNPDXPVGQRFEYLVVQTKINELTVGIAIIYNPIVTNPNFTAE
FT                 YEKLLFDIQDLGVDRLYLLGDFNINVTAPSPTGNHEALLRIHQTFNLTILP
FT                 TTPTRITDRSATTIDLMVTDCPQSIVTAKAVSNSISDHETIYLISNVRCRK
FT                 PTAHRLTVRDFRAIDTTRLQADFQGIRFENILDTRDVNVKTQSLTSELCNL
FT                 MDRHAPEKIITVKDKRTPWMTTEIEQAIVVRNLAHELYSRNPHRRRDDAQW
FT                 LEYTQKRDRAAILVSQAKKRYGERYFAPHLPAKKLWNNLRREGVHNSTKKE
FT                 LPEEQIDVEQLNSFFCEGHRQLQIQVPATSTRNELHRAIRDEGVREQFNFC
FT                 HTNAGEVASKMNQIQSNATGADGIPISFVKLLCPFIYPVLVDLYNSVIDSR
FT                 TFPVMWKKGIVTPIPKVPNPLXPKDFRPITVLPAISKVLEKVLLDQIVEYI
FT                 DAPGSHLLSRCQSGYRKKYSTTTALAKITHDIYNSFDGDHCTLMVLVDFSL
FT                 AFNCVNHLKLKSKLSEEFCFSQDACALVTSFLGHRSQAVKVGSTVSAVHPL
FT                 TDGTPQGSCLSALLFSLYVNSLPQGLKCSYQLYADDLQIYVSGPKQDIERL
FT                 VALVNTDLQHIERWAGINSLFPNPKKTQAIIFCREGTITPITDITFCAEAI
FT                 PLSDSVTNLGLQMDRNLRWLTQVNGITKKVFGTLRTFRRFSPVLTTQTRKK
FT                 LVQAVVMPFFTYCDVVYHPGLSVAQKEQLNRCFKAAVRFVYRLRRRESTEE
FT                 VRNTILGHDLATNYRNRICSFMRQGYAKDLPDYLLQHLQRGTQERTRCFTI
FT                 PAHTTSQRKSILIAGALSWNGVPLQIKLEPTINSFKAAVKRWQ"
XX
SQ   Sequence 3434 BP; 1023 A; 872 C; 717 G; 817 T; 5 other;
     tggtagtatt cagtagcgct gaagtacgct cggaagtttt gaagaaatac ttccagttac        60
     acaaagaagc caagttgtgt aatttggaaa aggggcttcc tctacagtat cgcttcaccg       120
     ttaatgagat gctctctgtt aaaagctwcc gtgttcgaaa ccttgcgcta agaatgaagc       180
     agaaaaagct cattcaatcg gtgtacgtca gaaacgacag catatccata cgtctaccgt       240
     gccagaaaaa gtacattccc atcgaagata ccggacatct gcttaaattg atgaacgcaa       300
     gctcttgcac taacgagtcc tcgattttct acgacgcaga atcctcacat ttctaaatat       360
     ttaatcaagc gctaacgatt cctatcacga cgaaaatatg cccaacaatt gcacgaacct       420
     ccgtataggc caccttaacg tccgtggact agaatgtcac gcggatgaaa tgaaaattct       480
     actcgacaag aaccagtacc actttttcgc agtcaccgaa accaaaatga aagcatccag       540
     ttcgatgggg cccgttcgag tcccgtctta caatttcwtg aaacactgcc taccagctgg       600
     aagaggcaga ggcagcaaat catgcggtgg aataggactg tacttcctca aagggctgaa       660
     ggtttcacca gtgatgaagt caactttcaa ccccgacktc cctgttggac aaaggttcga       720
     ataccttgtg gtccaaacca aaatcaacga gctcactgta ggtatcgcga tcatctacaa       780
     tccaatcgtt actaatccga atttcaccgc tgagtatgaa aagttacttt ttgatataca       840
     agacctaggc gtcgacaggc tgtacctcct aggagatttc aatatcaatg taactgcacc       900
     ttcgcctacc ggaaaccatg aagcactttt gcgaatacac caaactttta atttaacaat       960
     tctgccaaca actccaacta ggattacaga caggagtgca acgactatcg acctgatggt      1020
     taccgactgc cctcaatcaa ttgtgacggc caaagcagtc tcgaactcaa tttcggatca      1080
     cgagacaatt tacctaatct cgaacgttcg atgcaggaaa ccaacagccc accgcctaac      1140
     ggtaagagat ttccgtgcca tcgacacaac cagattgcaa gcagacttcc agggaataag      1200
     attcgaaaac attttggata cgagggacgt caatgtcaaa acacaatccc tcacgtctga      1260
     attgtgcaac ctgatggatc gccatgcacc tgagaagatc atcacagtca aggataaacg      1320
     cacgccatgg atgacaacag aaattgaaca agcaatcgtc gtcagaaacc ttgcccacga      1380
     actctattcg cgaaatcctc atcgaaggcg ggatgacgca caatggctgg agtataccca      1440
     aaaacgtgac cgagctgcaa tcctggtttc acaagccaaa aagcgttacg gcgaacgtta      1500
     cttcgcacca catctaccmg cgaaaaaact ctggaacaac ctaaggaggg agggcgttca      1560
     caacagcacc aagaaagagc taccagagga acagatcgac gttgagcagc taaacagctt      1620
     cttttgcgaa ggtcatcgcc aactacaaat tcaagtgcct gcaacctcta cgaggaatga      1680
     actacatcgt gcaatcagag acgagggcgt cagggaacag tttaacttct gccataccaa      1740
     cgctggtgaa gttgcctcta aaatgaacca gattcaatca aacgccaccg gtgcggatgg      1800
     catcccaatc tcgtttgtaa agctgctttg tccattcatc tatcccgtac tggtagacct      1860
     gtacaactcg gtgattgata gcagaacgtt tccagtcatg tggaagaagg gaatcgtcac      1920
     tccgattcca aaagtgccga acccgctaca kcccaaagac ttcaggccga ttacagtgct      1980
     tcccgcaata tccaaagtac tggaaaaggt tttactcgac cagattgttg agtacatcga      2040
     tgctccaggc tcgcatttgc tttcgaggtg ccaatcgggt tacaggaaga aatacagcac      2100
     aacaacagct ctcgccaaaa ttacacacga catctacaac agcttcgatg gtgaccactg      2160
     tactctcatg gtgttagtgg acttctctct cgcattcaat tgcgtcaacc acctgaaact      2220
     gaagtccaag ctcagcgaag agttttgctt ttctcaagat gcctgtgcgc tggttacatc      2280
     cttccttggg catcgcagcc aagctgtgaa agttggatca acggtctctg cagtgcaccc      2340
     tctcacagat ggtacgcccc agggttcctg cctaagcgct cttcttttta gcctgtacgt      2400
     aaatagtctg ccgcagggac tcaagtgcag ctaccagctg tacgcagacg acctacaaat      2460
     atatgtatcc ggaccaaagc aagacatcga aaggcttgta gcgttggtca acaccgatct      2520
     tcagcacatt gaacgttggg ccgggatcaa ctcacttttc ccaaatccaa aaaaaactca      2580
     agctatcatc ttttgcagag aaggaacaat tacaccgatt acagacatca ccttttgcgc      2640
     cgaagccatc ccactatccg atagcgtcac taacttgggt ctacaaatgg acaggaatct      2700
     tcgatggctc actcaggtta atggaatcac aaaaaaagtt tttggcactc tgcgtacctt      2760
     tcgtcgtttc tcgcctgtgc tgactaccca aacccggaaa aaactagtgc aagccgtggt      2820
     gatgcctttc ttcacctatt gcgatgtagt gtatcacccc ggcctgtccg tagcacaaaa      2880
     ggagcagctg aacagatgtt ttaaggcagc ggtccgtttc gtataccggc ttcgtcggag      2940
     agagtccacc gaagaagtga ggaacaccat cttgggacac gatctagcaa cgaactatcg      3000
     gaaccgtatt tgcagcttta tgcggcaggg atatgccaag gatctgcccg actatttgct      3060
     gcagcacctt cagcgaggaa cgcaagagcg cactcggtgc tttaccatcc cagcacacac      3120
     gacgtcccaa aggaaaagta tcctcattgc aggagctctt agctggaacg gcgttcctct      3180
     tcaaattaag cttgaaccaa caattaattc attcaaggca gccgtcaaac gatggcagta      3240
     gataataggt acctagatta aatttaatgt ggtcgttatt gacactgaca gtcactgtaa      3300
     cttgtaaaac cgtgatttaa ttactagttt ccaatgttta atatccaaat ttacttcgtt      3360
     cgtttccttg acctgagata tagtttgtaa actgacaggg tatcgtaacg ttaataaatt      3420
     acaattacaa ttac                                                        3434
//
ID   Kiri-27_AAe repbase;    DNA;    INV; 4099 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-27_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4099
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 722-722 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           324..1067
FT                 /product="Kiri-27_AAe_1p"
FT                 /translation="MMSTRSQKPITSPAATTGYTLESVMTMLSKRFDETNQ
FT                 NIDTSKDELNNKLDSIKEDLQKQIMSVEQNFSALKAACDDEHRSLSSRIDQ
FT                 ATESVQRLENRAELIVAGIPFITNENLRDYILHIAETIGFDCDRVSHIHCK
FT                 RLRSGNLPDGSECFILLQFSVVCLRDEFYSKYLSKRDLKLSHIGFSSDRRI
FT                 YINENLTVNARAIKRAALKLRRENKLAAVSTKLGVVQVKKTANGPSMSVAS
FT                 IDQLMQI"
FT   CDS           1240..4029
FT                 /product="Kiri-27_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLSSRNSTLSQHTIPRIVMNTRRFCKFEEIKLMLLDS
FT                 KISVACFSETWLNLSIPDQAISVPGYHLVRNDRVYKKGGGIAIYIREGISF
FT                 KSVYSSNVTASSVCKTECLALELQIDETSMLISAIYNPPDNDASTFMLCEL
FT                 VTLLSTYEHCVLIGDLNTDWSRRSTRKERLAELFTTYSMTVVGTEPTHFYN
FT                 DGCSQLDLLVTNRPDIATSFHQVSVPGLSKHDLIFCSFDIDMCPSSRNYIG
FT                 DYRDYVNFDPNTLRNNINNISWNAFYDIDDVNHLIEFFNNSILAVHDSSIP
FT                 IRTVRRRKRYNTWFNDDIRKAILERDLAYKDWRVAPRERKDEKKHVYTQLR
FT                 NRTNALIRRVKMEHIGRNIVMAGGSPTALWKMVKDLGVGKSATQTDCSFDP
FT                 ELVNQKFASHFTIDNESSFEYQDPHPVGSFNFRQIEAYEVINAFYDVKSNA
FT                 VGIDEIPTRFIKTILPLIVDHVVHLFNKIIVSSVFPEIWKCAKIIPLKKLR
FT                 HLNSMDNLRPISLLSVLSKVLEKLLKKQISAHISSLNLANEDQAGFRRGHS
FT                 VKTALLRVYDDIAAFVDRKDKVVLLLIDFSKAFDTISHQRLLHKLQTRFSF
FT                 SLSAVELIKSYLVGRTQVVRCNDLSSDAVAVTSGVPQGSVLGPLLFSLYID
FT                 DLPGVLRYCRVQMFADDVQLYCSHPEAATAAAMLNEDLQRVINWASRNFLR
FT                 INHTKTKAILFGDNRHVDPAILPLTVEGSQIQFTDYANNLGIIFQSNLGWD
FT                 KAVSTQCGKVYAGLRTLRATTSDLPQNIKLQLFKSLLLPHFIFGDVVHLGM
FT                 SMAMFSKLEVALNDCCRYVYNMNRYTSVRNLQRNLLGCPFRRFYEMRACLQ
FT                 LWRIFHRSEPANLARKLRLLQGRRSLNFVVPLHRTAIYGDSLFVRGVVYWN
FT                 AQPMELKQIHSEAMYKKAALEYFNRN"
XX
SQ   Sequence 4099 BP; 1175 A; 834 C; 869 G; 1221 T; 0 other;
     agttctggca accatgccaa tgaagtataa cagacgcgaa tagtgtacgg acgacaaaca        60
     gttttttaag tatgctaagt tcatcccggg agtttgagtt tgcattaatc gagtaatata       120
     aatatgtatg gacattgttg aagtgaaatc gcgtaaaatt cgtttcgccg cgctacatat       180
     tctccgaccg aaaatcattg ctgcaggtca ttagaagaaa gccataagat cccgaattcg       240
     cacaattgtt tccgtacata gtggtctact gtgggaatca tctcatattg ctatattctt       300
     ccgctgttcg taaacaagtt cgaatgatgt caaccagaag ccaaaaaccc attactagtc       360
     cggctgctac aactggatat acgttggaaa gtgtgatgac aatgctttcg aaacgttttg       420
     acgaaacgaa tcagaacatt gatacgtcta aagatgagct caacaataaa ctcgatagca       480
     tcaaagagga tcttcagaag cagattatgt cggtggaaca gaacttcagt gctttgaaag       540
     ctgcctgcga tgacgagcac agatcactca gcagtcgtat tgatcaggcc accgagagcg       600
     ttcaacggtt ggagaacaga gctgaactga ttgttgcagg gataccgttt attaccaacg       660
     agaatctgag ggattatatt ctgcatattg cggaaacgat aggttttgac tgcgacagag       720
     tgtcccatat ccactgcaag cgtctacgat ctggtaacct tcctgatggc agcgaatgtt       780
     tcatcctctt gcagttctcc gtggtgtgtt taagagacga attctactcg aagtacttat       840
     ccaaacgaga cctaaagcta agtcacatcg gtttttcctc ggatcgtcgt atttacatca       900
     acgagaactt aactgtgaat gctagggcaa tcaagcgagc tgctttgaag cttcgtcgag       960
     aaaataaact agctgctgtt tcgactaaac ttggagttgt acaagtgaag aagacggcga      1020
     atggtccttc catgtctgtc gcatctatag accagttaat gcaaatttaa ttatgtattt      1080
     gaatctctta gtgtgcttac ttattgtttg ttaatgtaaa aatgtttgta aaagtttttg      1140
     tttttgaaat tgtcggaata ttgtaattgt atgtgaaaaa atggagaaga gtatgtgtat      1200
     gcagcctatt agtgtacatt gcttcccaca cggtacctga tgttatcatc gagaaactcc      1260
     acactctcac aacacactat ccctagaatt gtaatgaaca ctcgacggtt ctgcaagttc      1320
     gaggaaatca aactaatgct gcttgattcc aagataagtg ttgcttgttt ctcagaaaca      1380
     tggctaaatc tttctattcc tgatcaagca atatctgttc ctggttacca tctcgtacgt      1440
     aatgatcgag tgtataagaa gggtggtgga atagccatct atattcgtga aggcatctct      1500
     ttcaaatctg tttactcttc aaatgtaact gcttcttcgg tatgcaaaac agaatgtctg      1560
     gccctagagc tgcaaataga tgaaacttct atgttgatct ctgcaatcta caatccacct      1620
     gataatgatg catcgacctt catgctgtgt gagttggtta cacttttatc aacttacgag      1680
     cactgcgtgc tcatcggaga tcttaatacg gattggtcac gtagaagcac tagaaaagaa      1740
     cgattggcgg aactgtttac tacttattct atgaccgtag tgggaactga gccaacccat      1800
     ttttataatg atggatgctc tcaactggat ctgctcgtca caaaccgtcc ggatattgct      1860
     acttcctttc atcaagtttc tgttcctggc ttgtcaaaac acgatctcat attttgttcg      1920
     tttgatatcg atatgtgccc atcgagtcgg aattacatag gagactatcg tgattatgta      1980
     aatttcgacc caaatacatt gcgtaacaac atcaacaata tctcttggaa tgctttctac      2040
     gatatcgatg atgtgaacca cctcattgaa ttcttcaata atagtattct agcagtgcat      2100
     gattccagta ttcctataag aacagtaaga cgacgcaaac gttacaatac ctggttcaac      2160
     gacgacattc gaaaggctat tttggaaagg gacttggcgt ataaggactg gagagttgcg      2220
     ccaagggaac gcaaagacga gaagaaacat gtgtatacac agttgaggaa tagaacgaat      2280
     gctctgattc gccgtgttaa aatggagcat attggcagga atattgttat ggctggtggt      2340
     tcacctaccg ctctctggaa aatggtaaaa gatctaggtg tcggcaaatc tgcaactcag      2400
     acagattgtt cttttgaccc agaattggtg aatcaaaagt tcgccagtca ttttacaatc      2460
     gacaatgaat ccagctttga ataccaagat ccacatcctg ttgggagctt caattttcgt      2520
     cagattgaag cttatgaagt gattaatgct ttttatgacg tcaagtctaa tgcggttggc      2580
     atcgatgaga ttcctaccag atttatcaag acaatactgc cactaattgt cgaccacgta      2640
     gttcacctat tcaacaagat tatcgtatca tctgtcttcc cggaaatttg gaagtgtgct      2700
     aagataattc ctttgaagaa gttgaggcac ctaaattcaa tggataatct gcgtcctatc      2760
     agcttgttga gtgttttgtc gaaggtctta gaaaagctgc tgaaaaagca aataagtgct      2820
     catatttctt cactaaatct agcgaacgaa gaccaagctg gcttccgacg tggtcatagc      2880
     gtgaaaactg cgctgcttcg tgtatatgac gatattgctg catttgtcga caggaaggat      2940
     aaagtagtac tattgctgat tgatttcagc aaagcgttcg atacgatctc tcatcagcgt      3000
     ctcttgcata agctgcaaac acgtttctct ttctccttat cggctgttga gttgattaaa      3060
     tcgtatctcg ttggtagaac acaagttgta cgctgtaacg atttatcatc tgatgcagtt      3120
     gccgtgactt ctggtgtacc acagggctca gtacttgggc ccttgctgtt ctccttatac      3180
     attgatgatc tccctggcgt actgcgatac tgtcgggtac aaatgttcgc agatgatgtg      3240
     caactttact gttctcatcc cgaagctgca actgcagcgg caatgctgaa cgaagatcta      3300
     caaagagtga taaactgggc ctcccgaaac tttctccgca taaaccatac aaaaactaaa      3360
     gcgattttgt tcggtgataa ccggcacgtg gatccagcta tcctgcctct taccgttgaa      3420
     gggagtcaaa ttcaattcac cgattatgcg aacaaccttg ggattatttt ccagagtaac      3480
     ttaggctggg acaaagctgt atcaacccaa tgtggaaaag tgtatgctgg tctccgtact      3540
     ctgcgtgcca ctacgtcaga cctgcctcaa aacattaagc ttcagctttt caagtccttg      3600
     ttgttaccac acttcatctt tggcgatgtc gttcacctcg gaatgagtat ggctatgttt      3660
     tcgaagctgg aagtagcact aaatgactgt tgccgctacg tttataacat gaatcgctac      3720
     acttctgttc gaaatctcca aagaaatctt cttggctgtc cttttcgccg gttttatgaa      3780
     atgagagcat gtttgcagtt gtggaggatt tttcatcgca gtgagcctgc caatcttgct      3840
     cgaaaactga ggctgcttca aggacgtcgt tcactaaatt ttgtggttcc attacatcgt      3900
     actgcaatat atggtgactc gttatttgtg agaggagtgg tgtattggaa tgcgcaacca      3960
     atggagctaa aacaaattca ctcggaagca atgtacaaaa aggctgcact agaatatttt      4020
     aacagaaact agtttatttc tcgttcaaaa aaacgtttag tgttcgctag aacttaagtt      4080
     actacaatgt aaatatcta                                                   4099
//
ID   Kiri-28_AAe repbase;    DNA;    INV; 3054 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-28_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3054
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 723-723 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >94%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..2871
FT                 /product="Kiri-28_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASRSGRDASSNWCLPGTVMKSALVKNKLSVCCINSQ
FT                 SICARKFCKLDELRQIAQTSSVDIICVTETWLNEKIDDSLLTIEGYKIIRH
FT                 DRKGRLGGGIAIFIKEAIHFKVLEKSLDKPESSYSEYAVVEIVTGSEKLCL
FT                 AVMYNPPVVNCALIFDEILSSYGTQFNDILFVGDLNTNLLNHNSTRTTELL
FT                 TSMSIHDMFSIGSEPTFFYNNGSSQLDLMLINCRSRVLRFNQVDVPSFSNH
FT                 DMIFVSLDFDTTHTPKKIEYRDYKSIDIDSLIDDFDSLDWFNYYRSNDANF
FT                 LLSFFNSSILALHEKYVPIRSFVSRNNKNEWFNSTISKAIVDRDLAYKRWK
FT                 NSKSPDDLNLFKILRNQVTMKVRQSKKSHYERKLDTSLPSKELWKRLKNIG
FT                 VTKTAKSPTTLFNSDEINANFANNFTDSSDESEVNSIFNESFRRNRFYFDQ
FT                 INEIDVVNALYHTKSNAIGLDELPIKFLKSINPLIIRPIAHLFNCIIATSI
FT                 FPDEWKKSKIIPFKKKANLNSIQNLRPISILSALSKVFERIIKEQVCLFIN
FT                 RENLLISHQSGYRAKHSTKTAMLKVFDDIGLVIDNGRPVVLLLLDFSKAFD
FT                 TISHRILCRKLTENFGFSSHAMNLIKSYLVGRTQTVLNDGVFSSYLPISSG
FT                 VPQGSILGPILFSIYINDLPNVLKYCQIHIFADDVQLYFGCCDDSSSIISR
FT                 KINEDLTSIAEWSIRNKLLLNANKTCATFLSNSRSNSILKPILKINNTEIE
FT                 FVDQAICLGITIHSSFKFDNFIFGQCGKIYASLRVVRAVSSFLNVDIKLKL
FT                 FKSLILPHFIACDFILSKSSMYAESRLRIALNACIRVVFGLDKYSSVSHLQ
FT                 HYLLGCPFDKFAPLRCCLFLFKLATHKTPGYLYEKLKPLRNSRAKKYAIPR
FT                 HNTSSYGNSFFVRGISYWNSLPNDITLESSLFAFKRKCTEYFNS"
XX
SQ   Sequence 3054 BP; 1011 A; 553 C; 497 G; 993 T; 0 other;
     taatcgctaa gatcaaaatt tatcctaatg gctagtagat ctggtagaga tgcctcgtcg        60
     aattggtgtt tgccagggac cgttatgaaa agtgcactcg ttaaaaataa actttcagtg       120
     tgttgtatta acagccagag tatatgcgct cgcaagtttt gtaaattaga cgaactgcgt       180
     caaatagctc aaacgagctc agttgacatt atttgcgtaa cagagacatg gcttaatgag       240
     aagatcgacg attcattgct gacaatcgaa ggctataaaa ttataaggca tgacagaaaa       300
     ggaagattag gaggtggtat cgcaattttt ataaaagaag caatccactt caaagtactc       360
     gaaaaatcat tagataaacc tgaatcgtct tattctgaat atgcggtagt cgagatagtt       420
     actggttctg aaaaattatg ccttgctgta atgtacaacc cacctgtcgt aaactgtgct       480
     ctaatatttg atgaaatatt atctagttat ggcactcaat tcaacgatat actatttgtc       540
     ggtgatttga acacaaattt gctgaaccat aattcaacga gaacaacaga acttctaacg       600
     tcaatgtcca ttcatgacat gtttagtatc ggatccgaac caaccttttt ttataacaac       660
     ggctcatcgc agctcgatct tatgcttatt aattgtagat ctcgagttct aagattcaac       720
     caagtcgatg tcccatcatt ttcaaatcat gacatgatat tcgtttcgct cgatttcgac       780
     acaactcata cacctaaaaa aattgaatat cgcgattaca agtccattga tatcgatagt       840
     ctcattgatg attttgattc tctagattgg tttaattact atcgttcaaa tgatgcaaat       900
     tttcttctta gttttttcaa ctcaagtatt ttagcattac atgagaagta cgttcctatc       960
     cgttcatttg tttcaaggaa caacaaaaac gaatggttca acagtacaat cagtaaagca      1020
     attgtggatc gggatcttgc ttacaaaaga tggaaaaact cgaaaagccc cgatgaccta      1080
     aatctattca aaatactccg caatcaggta accatgaaag ttcggcaatc taaaaagtca      1140
     cattatgaaa gaaaactgga tactagtttg ccttccaaag aactatggaa aagattaaaa      1200
     aatattggtg taactaaaac agcaaaatca cccacaactc tgttcaactc agacgaaatc      1260
     aatgccaact ttgctaataa cttcacagat agtagtgatg aatctgaggt caacagtatc      1320
     ttcaacgaat ctttcaggag aaatcgtttt tactttgacc aaatcaatga aattgatgtc      1380
     gtcaatgctt tatatcacac aaaatctaat gctataggac tagatgaact tccaattaaa      1440
     tttctgaaat caatcaatcc attgataatt agacctattg cgcatttgtt taattgtatt      1500
     atcgccacga gtatatttcc ggatgaatgg aaaaaatcca aaataatacc attcaagaaa      1560
     aaggctaatc taaattctat acaaaatctt cgtccaataa gtatattgtc agcgttatcc      1620
     aaagtttttg aacgaatcat caaggagcaa gtctgtcttt ttatcaatcg ggagaatttg      1680
     ttgatttcac accaatctgg ctatcgcgcc aaacatagca caaaaactgc aatgctgaaa      1740
     gtcttcgatg acataggtct tgtcatagat aatggacgac cagtcgtttt attgcttctt      1800
     gacttttcga aagcctttga caccatctca caccgaattc tttgtcgcaa gttaacagaa      1860
     aattttggtt tttccagcca cgcaatgaat ctcataaaat cgtatttagt tggacgaacc      1920
     caaactgttt tgaatgacgg ggttttctct agttatctcc ctatttcttc cggtgtaccc      1980
     caaggttcaa ttctgggacc tattctcttt tctatataca ttaatgacct tccaaatgtt      2040
     ttaaaatatt gccaaatcca tatatttgca gacgacgttc aattgtattt tggatgttgc      2100
     gatgattctt cgtcaataat atcaagaaaa atcaacgaag atcttacaag cattgctgag      2160
     tggtcgataa ggaataaatt attattgaat gcgaataaga cttgtgctac gtttctaagc      2220
     aattctcgat ctaatagtat ccttaaacca attttgaaaa taaacaacac tgaaattgaa      2280
     tttgtagatc aggcaatctg tttgggaatt acgattcatt ccagttttaa atttgataat      2340
     ttcatatttg gtcaatgtgg taaaatttat gctagtctac gagttgtccg tgcggtttct      2400
     tcttttttaa atgtcgatat aaagctcaaa ctcttcaaaa gtttaattct tccacatttc      2460
     atagcctgtg attttattct ttcgaaatct tcaatgtacg ctgaatctag attacgaata      2520
     gctcttaatg cttgcattag ggtagtattc ggccttgata aatattctag tgtctcccat      2580
     cttcagcatt acttgttagg atgcccattc gacaaatttg ctccattaag atgctgctta      2640
     tttttgttta aacttgcgac acataaaact ccaggttatt tatacgaaaa actaaagcct      2700
     ttgagaaatt cccgtgcaaa aaaatatgct attccgcgac acaacacatc ctcttatggc      2760
     aattcctttt tcgtgagagg catctcctat tggaattcat tacccaatga tataaccctt      2820
     gagagttctt tatttgcgtt taagaggaaa tgtacggagt actttaatag ttagcttgaa      2880
     gttattttta agattgtata aattattgaa atgtttgaat ttttattttg aattagtaat      2940
     ggtaaacgac acaccttcct acgcattcct aacattatgt aacaattcaa aaagacgcta      3000
     agtcttatgt tacgaattat tagtgaaata aataaaataa aataaataaa ataa            3054
//
ID   Kiri-29_AAe repbase;    DNA;    INV; 4250 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-29_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4250
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 724-724 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           252..1040
FT                 /product="Kiri-29_AAe_1p"
FT                 /translation="MSLNVKTNKPLTRSGSTSSASSTNNELPAQRAVPEFA
FT                 TIASLDDLWTRMQGMFERTYEKIESSKTELAERITDVEGQLGKVREECSSR
FT                 VDKLEETLSGVRLDLDHTTEAVHRMEKNDELIISGIPFQNNENLASIFLTI
FT                 SQSIGYSEDSSPFVELKRLARQPIARGATPPILCQFAHRLTRNEFYRKYLG
FT                 KRNLSLRNIGFENDNRIFINENLTSKARSIRTEAIKQKKLGRIQSVTTRDG
FT                 VVYVKFSGSGELDAIHNIQQLN"
FT   CDS           1227..4082
FT                 /product="Kiri-29_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MWWSLNSIMDNLHTDVHNALNNLSIPRAVINSALVDG
FT                 KLNICHINVQSLCARNFSKFEELKRTIENSKLDVVCFTETWLNDTISDRMI
FT                 CLNGFKLIRNDRNRHGGGICVFIRSNLSCRVVCKSSVSDSQSTLQRTEFLI
FT                 LEVVVGDHCLLLAVYYNPPDVDCADILEKHITDYSLHYSSTFLIGDFNTDP
FT                 RKHTGRAVRLNDVFANMSYDVVNHEPTFFFNSGSSLLDLLITDSATSVLRF
FT                 NQISMPGISKHDLIFASLDFDRDSQQAGFWCRDYYNYDANALHSEFSNFDW
FT                 NSFLQIDDPDVLLSVLNPRLTDLHERFFPMKFKKFKKNPWYSRDIEKAMID
FT                 RDLAYRIWKRTRSSQHRADYNHLRNRVNDLISKAKCDYDRRRLNLTLPSKQ
FT                 LWNNVKSLGVSHKKSSSQNCAHSSDVINDYFCSNFSIDNSEGSYVRGVSPG
FT                 FEFRAVQNAEIVNAIFGIKSNSTGLDNIPIRFIRIIAPYAIPIFEHVFNRI
FT                 IFSEKFPAVWKRTKVIPLQKKQGVNSISNLRPISLLSTISKVFERLIKIQI
FT                 SDFIDRMNFLSPFQSGFRKCHSTETALMRVHDDIAQTVDKSGITVLLLIDF
FT                 AKAFDSVVHRKLVNKLSTTFRFSVSATNLIRNYLSERSQAVFSNGILSPFK
FT                 PIISGVPQGSVLGPLLFSLFINDLPSVLDFCSVHLFADDVQVYLCSNGTID
FT                 IRNMAEKINHDLYKIVQWSRKNSLPINPSKTKAMLLHKLKSPPNPPSLNID
FT                 GVEVEFVSKASNLGVVFKNSLEWDGHINSQCSKIYSSLKRLNLTTRHLDIP
FT                 TKKHLFKTFLLPHFIYGDFIYSNASISSLNRLRVAFNACVRYVYNLSRFSH
FT                 VSHLHTSMIGCPFVNFYKLRSCVTLFKIIKTKAPNFLFSKLSPLRGIRTRS
FT                 FYVPRHSSFYYGQSFFVRGIVNYNNLPNNIKSCESTTRFRSEIISYFQ"
XX
SQ   Sequence 4250 BP; 1293 A; 774 C; 803 G; 1379 T; 1 other;
     agtttctgaa gggatgtaca gcgacgagta atcggttttg tgatcgcagc caaattatct        60
     ttttcttcgc ttaattgcta cctaaaaata tccgctgctg gtgattttcc aaagttgaat       120
     tagtgataaa tctgtgtctg gtggccgtta ttcaaaatat tcattaaact gtgaaatttc       180
     ggcataagta gttttcatca taaagatttg cttgtgatta attgttataa ttacccttcg       240
     gaatcgacac catgtctcta aacgtcaaga ccaacaaacc actcactcgc tcgggttcaa       300
     cgtcgtctgc atcatccacc aacaatgagt taccagcaca acgtgccgta cctgaatttg       360
     caaccatcgc gagtctggac gatttatgga cgagaatgca aggaatgttt gagaggacct       420
     atgaaaaaat tgagagcagt aaaaccgaac ttgctgaacg cattactgat gttgagggcc       480
     aactagggaa agtgagagag gagtgttcta gtagggtcga caagcttgaa gagaccttaa       540
     gtggagtacg gctagatttg gaccatacca cggaggcagt acatcgtatg gagaaaaatg       600
     acgagttgat catttctggg attccgtttc aaaataatga aaatctggct agtatctttc       660
     taacaatttc tcaaagcatt ggctattctg aggatagctc tccttttgta gaacttaaac       720
     gcttagctcg acaacctatt gcccgtggtg cgactccccc aattctttgt cagtttgccc       780
     atcgtctcac tagaaacgag ttctatcgaa agtatcttgg taaacgtaac ctcagtctgc       840
     gtaacattgg tttcgagaac gataatagaa ttttcatcaa cgagaacctt actagcaagg       900
     ctaggtcaat tcgtactgag gcaatcaagc agaagaagct agggcgtata cagagtgtca       960
     ctacgcgaga tggggtagtt tacgttaaat ttagtggctc tggggaactt gatgctatac      1020
     acaatatcca acaactgaat taatatgaaa attgttatac tatatcagtg gtgggcgttt      1080
     tttcttttta tcattgaata gcaatcaccg tagctaattt gatttggctg taaattaatg      1140
     tgcaaacgat attcgaacta tgattagctt taagtttatg ttctctttta ctgttatcac      1200
     tacaaataca ccgtctcaca cttcaaatgt ggtggtcatt aaattcgatt atggataatc      1260
     ttcatactga cgttcacaat gccttgaata atctctcaat acctcgagcc gtaattaact      1320
     ctgctcttgt cgatggtaag cttaatattt gtcacattaa cgtacagagt ttatgtgctc      1380
     gtaactttag caagtttgag gaactgaaaa ggactatcga aaatagtaag cttgacgttg      1440
     tttgctttac cgaaacatgg ttgaatgata ctattagcga tcgaatgatt tgtttgaatg      1500
     ggtttaagct tattagaaat gatcgtaaca ggcacggagg tggtatatgt gttttcattc      1560
     gaagtaatct ctcttgtcgt gtagtgtgca agtcttctgt cagtgattct caaagcactt      1620
     tacaaagaac agaattcttg atattggaag ttgtggttgg tgatcattgt ctacttttgg      1680
     ctgtctacta taatccacca gatgttgatt gtgctgatat tctggaaaaa cacataacag      1740
     actattcact wcactattca tctacttttt taattggtga tttcaataca gatccccgaa      1800
     agcatacggg tagagcagtg cgcttgaacg atgtttttgc caatatgtcg tatgatgtgg      1860
     tcaatcatga gcctactttc ttcttcaatt ccggtagttc attattggat ttgctcatta      1920
     cggactctgc cacttcagtg ttgaggttta atcagatttc aatgccaggt atttcaaaac      1980
     atgatcttat attcgcatcg ctggatttcg atcgcgattc tcaacaggct ggtttttggt      2040
     gtagagatta ttataattat gacgccaacg cactccactc tgagtttagt aatttcgact      2100
     ggaatagttt tctgcaaatt gatgaccctg atgttttact aagtgttctc aaccctcgtt      2160
     taaccgactt gcatgaacgt ttctttccaa tgaagttcaa gaagttcaag aaaaatccct      2220
     ggtatagcag agacattgag aaggctatga tagatagaga tctagcatat cgtatttgga      2280
     aaagaaccag aagtagtcag catagagcag attacaatca tctgagaaac cgtgttaacg      2340
     atctcatatc caaagccaaa tgcgattacg ataggagaag attgaatttg actctaccgt      2400
     cgaaacaatt gtggaataac gtaaaaagtc tgggagtatc tcataaaaag tcgtcatcgc      2460
     aaaattgtgc tcattcatct gatgttatta acgattattt ttgttccaat ttttctattg      2520
     ataacagtga aggttcatac gttcgaggtg tttcgccagg cttcgagttt agggcggttc      2580
     agaatgctga aattgttaat gcaatctttg gaatcaaatc aaattccacc ggactagaca      2640
     acattccaat caggtttatc agaatcattg ccccttatgc tattcctatt ttcgagcatg      2700
     ttttcaatag aataattttc tcggaaaaat ttcctgctgt atggaaacgc acgaaagtta      2760
     ttcctctgca gaagaagcag ggtgtaaatt ctatttcaaa tctaagacca ataagtttgc      2820
     ttagtactat ttcaaaagtt tttgaaaggc tgataaagat tcaaatatca gattttatcg      2880
     acagaatgaa cttcttaagt ccttttcagt caggtttcag aaaatgtcat agtactgaaa      2940
     ctgcactgat gagagttcac gacgatattg cacagacagt agataagagc ggtattactg      3000
     tgttgctact gattgatttc gcaaaagcat tcgatagtgt tgtacatagg aaactcgtta      3060
     acaaattaag tactacattc agatttagtg tatcagcaac taatctaatt agaaactatc      3120
     tgtcagaaag atctcaagct gtattttcta atggtatatt atctcctttc aaacctataa      3180
     tatctggtgt tccccaagga tcagttcttg gaccgcttct gttctcttta tttataaatg      3240
     acttgccttc tgttctcgat ttttgctctg tccacctatt tgcagatgat gttcaagttt      3300
     atctatgttc caacggaact attgatattc gtaatatggc cgagaagatc aaccacgact      3360
     tgtataagat cgtacagtgg tcacgaaaaa attcactgcc aatcaatcca tctaaaacga      3420
     aagccatgct cttgcacaaa ttgaaatctc ctccaaatcc tccttctttg aatatcgatg      3480
     gggttgaagt tgagtttgtg agcaaggcta gtaacttagg agttgtattt aaaaattcgc      3540
     ttgagtggga tggacatata aattcgcagt gctctaaaat atacagttcc ctcaaacgct      3600
     tgaaccttac tactagacac ctagatattc caacaaaaaa acatctgttt aagacatttt      3660
     tgctccctca ctttatatat ggcgacttca tttattccaa tgcgtcaatt agctctctca      3720
     atagactacg agtcgccttt aatgcgtgcg taaggtatgt ttataattta tcgagatttt      3780
     cacatgtttc gcatcttcat acgtcaatga ttggttgtcc atttgtaaat ttttataaat      3840
     tgaggtcgtg tgtgacgctt ttcaaaataa ttaaaactaa agctccaaac ttcctatttt      3900
     ctaaactatc acctcttaga ggcatacgta caagaagttt ttatgtacca cgacatagtt      3960
     ccttctatta cggccagtca ttctttgtaa gaggcatcgt gaactataac aatcttccga      4020
     ataatattaa atcttgtgaa tcgaccactc gttttcgaag tgagataata tcatattttc      4080
     agtagatgtg tagtgatttt tgtaaagaga acattagtag ttaagttacg taagaattat      4140
     tgtaaaacct attacttttt cacattgtaa caatttaaaa ggcaatgcct tacgttacga      4200
     agagtcaata aataaataaa taaataaata aataaataaa taaataaata                 4250
//
ID   Kiri-2_AAe  repbase;    DNA;    INV; 4389 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   06-JAN-2011 (Rel. 16.02, Last updated, Version 3)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2_Ele2;
KW   Kiri-2_AAe.
XX
NM   Kiritsubo-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4389
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4389
RA   Kojima K.K. and Jurka J.;
RT   "A distinct group of non-LTR retrotransposons from the yellow
RT   fever mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele2.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 10 sequences with >96% identity, and ~99%
CC   identical to the original sequence in [1]. This family does not
CC   belong to the L2 clade and is renamed as Kiri. It could
CC   constitute a new clade with other Kiri elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1061
FT                 /product="Kiri-2_AAe_1p"
FT                 /translation="MPDNDHTSRLRSNSLVKSSAKSTDADMTVAELANLMQ
FT                 SQLATYQRTVKEDFKKLGDSLSSISTEMTKLREDIASDIEKLREENNKTFN
FT                 SLSTTIDEAKRDTSLALDRSARMNDLLVSGVPFVVGEDLSNYFRTWCNSFG
FT                 YAERDHPLVDIRRLSKGTPTAGTVYMILIQFAITVQRNEFYSRYLNSRSLS
FT                 LSGIGFSVDKRIYINENLGPIVRNLRSKALQLKKAGKLRAVFTRSGVLFVR
FT                 RIGEDKEIAVSTENDLCLLAKTLS"
FT   CDS           1311..4238
FT                 /product="Kiri-2_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MICMILFVSKNVIFNEVLFYHSPLLVKSFFYLMANNP
FT                 NFYTSTNWCIPGTVIKSALIRNKLSVCCVNSQSICARKLCKIEELRAIVSV
FT                 SKVDIVCVSETWLNENVNSSILSIDGYNIVRHDRVGRLGGGVLIYIKCDIP
FT                 FNLVAKSDNQSGVAITEFLSIEVILQNEKLLLTAFYNPPEIDCTEPLEHLL
FT                 ALYGNTYSYVYLLGDFNTNLSVSSPKSNRMRSILSTYSIQCLGSEPTFFHK
FT                 NGSSQLDLILTNDVSKVLRFSQIEAPVLSNHDLLFASLDFEREVHPIKVEY
FT                 RDYNAIRIDSLVNAFYSADWRSFYRSNDSNQQLEFFNALLTDLHNLYVPIR
FT                 TTNSNKKFSPWFNNEIGKAIVDRDLLYKKWKNTKNANDLQAFKRARNSVNS
FT                 VIRLAKQNYFSSRLDPNLPAKELWKNVKMIGINPPSMQTTNSFTANEINHM
FT                 FCQNFTDNFSLDQSNVTNYVDREPFYFDRIDETDVVYAMNSIKSNALGLDM
FT                 LPMKFLKAICPILIKPITHLFNSIIITSAFPDAWKKSKIIPIKKKSNLNSM
FT                 DNLRPISILCALSKVFEKIIKSNISCYISRFNLLSQFQSGYRSKHSTKTAM
FT                 LKIIDDIGVVVDKGRPVVLILLDFSKAFDTVSHAILCRKLKTKFSFSDHAA
FT                 NLIESYLCSRSQAVFNNGVLSSFLPVTSGVPQGSILGPILFSLFINDLPCV
FT                 VKNCQIHLFADDAQLYYKCFENTSTKISQDINDDLQRIDDWSRENKLTLNT
FT                 RKTKALFISNCAFLNSLKPFLKLNNEVIEFVEHATSLGIRIESNLEWDSYI
FT                 LSQCGKIYACLRTLSKCASFLPSRTKLKLFKSLIFPHFLACDFLLDSVSLL
FT                 TFNKLKVALNTCIRYIFSLNRYSSVSHLHHLLIGCRLENFSKLRCCLFLHK
FT                 LCSTKQPDYLYSKLQLARSTRYKKYILPRYHTTKYGNSFFVRGVVHWNSLP
FT                 INLSNDKSYLAFKRGCEEHFK"
XX
SQ   Sequence 4389 BP; 1367 A; 781 C; 787 G; 1454 T; 0 other;
     gtagaatgaa gtgcacgtga aactagccat cctggtgcaa acaacaaaac aagttgtatt        60
     tccattaata aattcaccaa ttgctgatta aacttaccgt attagtgcat cgagtccact       120
     gtgaatgcag ttttgaatcc gtaacttact aaacgctgat aaaaactcgt ttatttgcac       180
     tctgtgggtt ttcgccattc gacattagag gcaaacaaag gatcactctt cgaacagtta       240
     tcttgtgtga cgctgttata tccaccatgc cagacaacga tcatacatca cggctgcgga       300
     gcaactcact cgtgaagtct agcgcgaaga gtactgatgc tgacatgact gttgcagaac       360
     tcgccaacct gatgcagtct caactggcta cctaccaacg aacagtcaag gaggacttca       420
     aaaagctcgg tgactctctt tcgagtattt ctaccgaaat gaccaagttg cgagaggata       480
     tagcatcgga tatcgaaaag ctacgtgagg agaataataa aacgttcaat agtctatcta       540
     cgacgatcga cgaagcgaaa agagatacat ctctggcgtt ggacagatct gctcgaatga       600
     atgatctttt ggtgagcgga gtgccgtttg tagttggtga ggacctatcg aactactttc       660
     gtacatggtg taactcattt ggttatgcag agagagacca tccacttgtc gacatccgac       720
     gactctccaa aggaactcca acagctggaa ctgtttacat gatcctaata cagtttgcca       780
     tcactgtgca acgtaacgaa ttctattctc gatatctcaa ctctcgttcg ttgtcgctct       840
     ctgggatagg attctctgtt gacaagcgaa tttacatcaa tgaaaatttg gggcccatcg       900
     tcagaaattt gcgatcgaag gcgctacaat tgaagaaggc tggaaaactg cgagcggttt       960
     ttacacggag tggcgtgcta tttgtacgga gaatcggaga ggataaggag atcgccgtgt      1020
     ctacagagaa tgatctatgt ttattagcca aaaccctttc ctaataagct tttctttatc      1080
     cttccgctcc ttcccataca tcccgtgatt ccttatccta aaagttttgt tcgagatgat      1140
     gctgctgctg ttgctgtgat gttccctgct cttgatgatg cgattgctgc tgttgttagt      1200
     ctacatttgg tggacactga ataaatgctc tctaatgttt gccgttctgg ttatgtagtt      1260
     ttaactatta gttacttgtt tttttttgtt tgcgccatgt atttgtttga atgatttgta      1320
     tgatattatt tgtttcgaaa aatgtaattt ttaatgaagt gcttttttat cattctccct      1380
     tattagttaa gtcctttttt tacctaatgg ctaataatcc aaatttctac acctcgacaa      1440
     actggtgcat tccaggtact gtgataaaat ctgctttaat tagaaataag ctttctgtgt      1500
     gctgtgtaaa tagtcaaagt atttgtgctc gtaagctttg taagattgag gaattgcgtg      1560
     ccatagttag tgtcagtaaa gttgatattg tatgtgtaag tgaaacatgg ttgaatgaaa      1620
     acgttaatag ttctatttta tcaattgacg gatataacat agttagacat gatagagttg      1680
     gtcgtctagg aggtggagtg ttaatttata ttaagtgtga tatacctttt aaccttgtag      1740
     ccaaatccga taatcaaagt ggtgttgcta ttacagaatt tttatccatt gaagtaattc      1800
     tacaaaatga aaaactatta cttactgctt tttacaaccc acctgaaatt gattgcactg      1860
     aaccacttga acacttgcta gcattatatg gtaatacata tagttacgtt tacctcctag      1920
     gtgatttcaa cactaatctt tctgtaagtt cacctaaatc taataggatg cgaagtattt      1980
     tatctaccta ttcaatacaa tgcctaggaa gtgagcccac gttctttcat aaaaatggat      2040
     catctcaatt ggatttaata cttactaatg atgtgtctaa agttttaaga tttagtcaaa      2100
     tagaagcacc tgtgctatca aaccatgatc ttctttttgc ttctcttgat tttgaacgag      2160
     aagtgcatcc aattaaagtt gagtatcgcg attacaatgc tattcgaatt gattcactag      2220
     tgaatgcatt ttattcagct gattggagaa gtttctatcg ctcaaatgat tccaatcaac      2280
     aattagaatt ttttaatgct ctattaacgg atctacataa cctgtatgtc cctatacgaa      2340
     ctactaactc caacaaaaaa ttcagtccgt ggttcaataa tgaaattggc aaagctattg      2400
     tagatcgaga tttgttgtac aaaaaatgga agaatactaa gaatgccaat gatttacaag      2460
     cgttcaaaag agctcggaac agtgtcaaca gtgttatacg tttagctaaa caaaattatt      2520
     ttagttccag gcttgatcca aatcttccag caaaagagct atggaagaat gtaaaaatga      2580
     tagggataaa tccgcctagt atgcaaacaa caaattcttt tactgctaat gaaatcaatc      2640
     atatgttttg ccaaaatttc acagacaatt tctcattgga tcaatcaaat gtaacaaatt      2700
     atgttgatcg tgaaccattt tacttcgata gaatagatga aactgatgtc gtgtatgcta      2760
     tgaactcaat aaaatctaat gctcttggct tagatatgtt accaatgaag tttttgaagg      2820
     ctatttgtcc gatattaatt aaaccgatca ctcacttgtt caattctatc attatcacga      2880
     gtgcttttcc tgatgcatgg aaaaagtcaa aaattatacc aatcaagaaa aaatctaatt      2940
     tgaattcaat ggataattta agacctataa gtatcctatg tgcactatca aaagtgtttg      3000
     aaaaaataat caaatcaaat atttcttgtt atataagtag atttaatttg ttgagtcaat      3060
     ttcaatcggg atatcgttcg aaacatagca caaaaactgc aatgctcaaa ataattgatg      3120
     acattggtgt tgttgtggat aagggacgac ctgtcgtact tattcttcta gatttttcaa      3180
     aggcattcga caccgtatca cacgccatat tgtgtcgtaa acttaaaaca aaattctctt      3240
     tttcagatca tgcagcaaat ctaattgaat cttatctatg ttcgaggtcg caggctgtct      3300
     ttaataatgg ggttctatca agctttctac ccgttacctc tggagtgccg cagggttcaa      3360
     ttttaggtcc aattttattt tctttattta taaatgacct accttgtgtt gtgaaaaatt      3420
     gccagattca tctttttgcg gatgatgctc aattatacta taaatgtttt gaaaatacat      3480
     cgacaaaaat ttcgcaagat atcaatgatg atttgcaacg gattgatgat tggtctcgcg      3540
     aaaacaagct aacattgaac actcggaaaa ctaaggctct cttcatttca aattgtgcct      3600
     tcctgaactc gttgaagcca tttttgaaac tcaataatga agttatcgag ttcgttgaac      3660
     atgctactag tttaggcatc cgaattgaat caaatttaga atgggatagt tatatcttgt      3720
     cacaatgtgg taaaatttat gcctgtttaa gaacgttatc gaaatgtgca tcattcttgc      3780
     caagcaggac aaaattaaaa ttgttcaaaa gcctaatttt tccccatttt ttagcttgtg      3840
     attttctgct agattctgtc tcattgctta ccttcaataa attaaaagta gcattgaata      3900
     cgtgtattcg ctatattttc agtttaaata gatattccag cgtttctcat ttacaccact      3960
     tactcatagg atgtcgctta gaaaatttca gtaaactccg ttgttgtcta tttttacaca      4020
     agctgtgtag cacaaaacaa ccagattatt tatacagcaa gctacaactt gcgagaagca      4080
     ctcgttataa aaaatatatt ttaccacgat atcatacaac taagtacggg aattcatttt      4140
     ttgtgcgagg tgtagtacat tggaattcat tgcctataaa cctttcgaat gataaatcat      4200
     acttagcttt taagagagga tgtgaagagc acttcaaata attttaattg taaatgtatt      4260
     agtagaaatt atttagttat tctcaataac tcttgcaaac ggcgctttct tctacagtaa      4320
     actactttgt gtagcataaa aaagacatga gtcttacgtt acatatatta gagcgataaa      4380
     taaataaat                                                              4389
//
ID   Kiri-2_CQ   repbase;    DNA;    INV; 4674 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4674
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 121-121 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >92%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1114
FT                 /product="Kiri-2_CQ_1p"
FT                 /translation="MATNTTTVDDKNNNKQFLQSSYVQGCQSSIDGRIGEN
FT                 SMTLDIAVRMLMMQFTEMKLMLETFRNDFNRKIDTIKSELQGKVSVLQSDI
FT                 TTLKAEYEGKFVNQDAALGQINHRVNHLYLNIGALENQKELIISGVPFVSD
FT                 EDPDALFAMICRQLECSEGEELLTSTRRVYVNGLKNGDVSPLLVEFALKTT
FT                 RDRFYSTYLRRRDLKLRHLGMPSDRRVFINENLNAGAREVKKAALLLKKVG
FT                 KLTSVFTKGGIVHVKRRVGDPPIAVQSVKDLDDV"
FT   CDS           1272..4118
FT                 /product="Kiri-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPVPHNHTNTNIPGAVLNAALLPGKLNICHGNAQSLC
FT                 ARKNSKLEEVRAALSSHKVDIACFTESWLTASRNNRSIGVQGYSVVRNDRV
FT                 YKRGGGIAVYYRDTMSCTKIFNTELTPESADKTECLALEFRLNGFKVLLVV
FT                 VYNPPDNNCAPFLEEKLTSLTLRYESVFLVGDFNTDLLQASNKRTQLLSAF
FT                 ESFSLVPYGCEPTYYHDTGCSQLDLLVTNDSDKILRFGQVDFPGLSQHDLI
FT                 YVSLDFDATQPVTVNTYRDYVHFDADALKFATVSIPWRNFYAILDPNHSLE
FT                 FFTERLKVVHDTCFPLRASSRRNAPNRWFTADVQRAILERDLAYKDWRTAA
FT                 SDVKDLKRRTYKTLRNRANSVIERAKKTFLGGYLDANIPSKLLWTRVKSLG
FT                 VGKDKSSQPCDHDPDEVNRMFLSSFTPAETRNDQHARILPSQYNFSFRNVH
FT                 YWEVVNAICEVKSNAVGMDGLPIRFLKIVLPLVIQQITHMFNLFINTSTFP
FT                 NLWKHAKVLPLKKKSNSNDVTNLRPISILCSLSKAFEKLLDQQMANYIDNN
FT                 HLLTEHQAGFRKGQSVKTAALRVHDDLASTIDKRGVGVLVLLDFSKAFDTI
FT                 PHNKLLDKLETEFNFSSTALNLMNSYLRRRKQTVFCDNRRSDCAEPTSGVP
FT                 QGSIIGPRLFCCHINDLPNVLKHCAIQLYADDVQLYIRGVGPCARDLIRMV
FT                 NQDLQNVADWSNRNRLLVNPAKSKALFIQSANRRAALVPDLRIEMNGEQIQ
FT                 WTERASNLGFIFQSDLQWDGLVSQQCGKIYAGLRTLYSCTPTAPVATKLKL
FT                 FKALVLPHFLFADVFFVRLSSSLFNRLRVALNCCVRYVYGLRRRDHVSHLQ
FT                 KNLVGCPMLNLFAYRSCLFLRNLLSSQTPPALYQKLILSRSQRLRNLVVPA
FT                 NRTAGYACTMFVRGVVHWNALPPAVKNSLSDATFKRGCKEHWNEV"
XX
SQ   Sequence 4674 BP; 1286 A; 1238 C; 1079 G; 1071 T; 0 other;
     acgtaaacaa cactgacgag caagatgtgt tgtgagtagc gcggagtaaa caaacttcaa        60
     tagtgatgta attcaaactt accgttcccg aaatcccacc cgcgaaaacc gaagtacccg       120
     tacgaaaccc gtgtgtgtta tccgcggaat tcgtcgtcat ctggaccaaa taaaacaaat       180
     cgaaatttgc cccgctgagc tggatccacc accgccatcg caaacaagcc gcaccgctga       240
     acgccgtcac gcacactttt gctgttttcg tagtgcatac tgctgcacga tggccacgaa       300
     cacaactact gtcgacgaca aaaacaacaa caagcaattc ctgcagtcgt cgtacgtcca       360
     gggctgtcaa tcgtcaatcg atggaagaat tggggaaaat tcgatgacgt tggatattgc       420
     tgtgaggatg ctgatgatgc agttcaccga gatgaagttg atgcttgaga cttttcgcaa       480
     cgacttcaac cgtaaaatcg acacaatcaa atcggagctt caaggcaagg tgagcgttct       540
     tcaaagcgac atcacgacac tgaaagcaga atacgaaggc aagtttgtga accaggatgc       600
     tgcgttgggc caaataaacc atcgtgttaa tcacctctac ctgaacatcg gtgccttgga       660
     gaatcagaag gagttgatca tctcaggtgt gccattcgtg agtgacgaag acccggacgc       720
     acttttcgcg atgatctgtc gacagctgga atgcagcgaa ggtgaagaac tgctgacgag       780
     taccagacga gtttacgtga acggattgaa gaacggggac gttagccctc tactcgtgga       840
     attcgctcta aaaactacac gcgaccggtt ctacagtaca tacctgcgta ggcgggacct       900
     taagctgcga catctcggca tgccgtcgga tcgacgtgtg tttatcaacg agaacctgaa       960
     cgctggcgct cgtgaggtga aaaaggcggc cctcctgctg aaaaaagtgg gtaagctgac      1020
     atccgttttc accaaaggag gaatagtcca cgtaaagcgc agggttggtg acccaccgat      1080
     cgctgttcag tctgtgaaag atctggatga cgtgtaaccg tagtcaaagc gtcacttttg      1140
     aagttatgtt gaagttatgt ttatgtttta ttgtgaaact tgtaaaattg tctttttgaa      1200
     attagacgtt aagaagccct ttgaagctgc ttctctaaaa cacccccccc ccccccttac      1260
     acacacacat aatgcctgtc ccacacaacc acactaacac gaacatccca ggagccgtgc      1320
     taaatgctgc tcttctccct ggtaagctca acatctgcca cgggaatgcc caaagtctgt      1380
     gcgcgaggaa aaactctaag ttggaagaag ttcgagctgc cctgtcgagc cacaaagttg      1440
     acatcgcgtg ctttactgag tcttggttga ctgcctcaag gaataaccgc agcatcggcg      1500
     tccaaggata ctccgtcgtg cgtaacgata gggtgtacaa gcgaggcggt ggtatcgctg      1560
     tttactacag ggatactatg tcgtgcacta agatcttcaa caccgaacta acccccgagt      1620
     ccgccgataa aaccgagtgt ctagccttag aatttcgtct gaacggattc aaagttctgc      1680
     tggtagtcgt ctacaaccct cctgacaata actgtgcacc ttttctcgag gaaaagctga      1740
     ctagtctcac tttgcgctac gagtccgtct ttctggttgg cgattttaac acggacttgc      1800
     ttcaagcgag caataagcgt acgcagctcc tctcagcatt cgaaagtttt tcactcgttc      1860
     cttacggctg cgagccgacg tattaccacg atactggatg ctcccaactg gatctgttag      1920
     tgaccaacga cagtgacaaa atcctacgtt tcggtcaagt cgactttccg ggattgtcgc      1980
     agcatgacct gatctacgta tctctggact ttgacgctac gcaacctgtc acggtgaaca      2040
     cctatcgtga ctacgtgcat tttgatgctg atgccctgaa gttcgcaacg gtcagtattc      2100
     catggagaaa cttctacgca atcttggacc ccaaccactc cttggagttc ttcacggagc      2160
     gactcaaggt tgtgcacgac acctgttttc cgcttcgggc gagctctcgg cgcaatgcac      2220
     cgaatagatg gtttacagct gatgttcaac gagcaattct agaacgagac ctggcgtaca      2280
     aggattggcg aactgctgcg tcggacgtaa aggacctgaa gcgacgtacg tacaaaacgc      2340
     tgcgaaatcg tgcgaactca gtcattgaac gggcgaaaaa gacgtttctc ggtggttacc      2400
     tggacgcaaa tatcccatca aagctgctct ggactcgcgt gaagagcctt ggagttggaa      2460
     aagacaaatc atctcaacca tgtgaccacg atccggatga agtaaatcgt atgtttctct      2520
     cgagcttcac accagctgaa actaggaacg atcaacacgc aagaatactg ccatctcaat      2580
     acaatttctc gttccgcaac gttcactact gggaggtcgt taacgccatc tgtgaagtga      2640
     agtcgaacgc cgtagggatg gacggtttgc caatcaggtt tctgaaaatc gtgctgccac      2700
     tagtaatcca acaaataacc cacatgttta acctgttcat caatacatct acctttccca      2760
     acctttggaa gcatgctaag gttctgcccc taaagaagaa atcgaactcg aacgacgtga      2820
     cgaacttgcg gccgatcagc atcctgtgct cgttgtccaa agcatttgag aagcttctcg      2880
     atcagcaaat ggcgaactac atcgacaaca accatcttct aacagaacat caagcaggtt      2940
     tccggaaggg ccaaagcgtc aaaactgcag cgctccgcgt ccatgacgat ttggcgtcca      3000
     caatcgacaa gcgtggtgtt ggcgtactgg tcctgttgga tttctcaaaa gctttcgata      3060
     ccatccccca caacaaacta ctggacaagc tggaaaccga attcaacttc tcttcgactg      3120
     ccttgaacct aatgaactcc taccttcgaa gacggaagca gacagtgttc tgtgataatc      3180
     gccgctcaga ttgtgctgag ccaacatcgg gcgttccgca aggatcaata atcggtcctc      3240
     gattgttctg ttgccacatc aacgatctac cgaacgtcct caaacactgt gcaatccaat      3300
     tgtatgcaga tgatgtccag ctctacatcc gtggtgttgg tccatgcgcg cgtgatttga      3360
     tcagaatggt aaatcaggac ctccagaatg ttgccgattg gtcgaaccga aatcgtttgc      3420
     tcgtaaatcc cgctaaaagc aaggcccttt tcattcaaag cgcaaaccgt agagctgccc      3480
     tggttcctga tctgcgcatc gaaatgaacg gtgagcaaat tcaatggacg gagcgtgcaa      3540
     gcaacctagg attcatcttt caaagcgacc tgcagtggga cggtcttgtg tcacagcagt      3600
     gtggcaaaat ctatgctggc cttcgcacac tctacagctg cacaccgact gcacccgtgg      3660
     cgacaaaact gaagctgttc aaagcccttg tcctgcctca ctttctgttc gccgacgttt      3720
     tctttgtccg tctttcgtcg agcctgttca accgactacg cgtggccctg aactgctgcg      3780
     tacgctacgt ttacggatta cggaggcgtg accacgtgag ccaccttcaa aagaacctcg      3840
     ttggatgtcc gatgctaaac ctgttcgctt accgatcctg tctgtttttg agaaacctgt      3900
     tgtcgtccca aacaccacca gcactctacc agaaactcat cctttcacga agccaacgtc      3960
     tacggaactt ggtcgtacca gcgaatcgga cagcaggata cgcttgcact atgttcgtca      4020
     gaggagtagt gcattggaac gcactccccc ccgcagtcaa aaacagttta tccgatgcaa      4080
     ctttcaagag aggctgcaaa gagcattgga acgaagtgta accactgtcg cgcccggagg      4140
     tcccggggcc cccctaacca caagtcaaag gaagagtgga atagggacaa ccctccggct      4200
     cctccggggt gcctggtaaa cacgacacgc aaaccgacga tacgccaacc gacgaaacac      4260
     cgacgaaaca ccgacaggag aatccactga ggttcaggag acccggggcc cccctaacca      4320
     caagtcaaag gaagagtgga atagggacaa ccccccgggc tcctgatgcc ccctggaaga      4380
     ggtcgcacaa ggggcaaacc cccatcccct cggataaacc ctggacttcg ccgcacgaca      4440
     acgctacacc accagcaaca aacgaccaac aaacgacgac tacgggagga cgatttaaac      4500
     ctgcgaaaat ttattaaaag tgactctagt ttttaaaatt tagtgcttca aattattaat      4560
     attaaattta ggttatcaaa ttattgcatg cacgtcgatc tacaccggaa gtagcaattt      4620
     taaaaggagc aatccttacg ctaccagata taataaacaa acaaacaaac aaac            4674
//
ID   Kiri-2_DEl  repbase;    DNA;    INV; 4448 BP.
XX
AC   .
XX
DT   21-SEP-2011 (Rel. 17.04, Created)
DT   01-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_DEl.
XX
NM   Kiri-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4448
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 572-572 (2012).
XX
RN   [2]
RP   1-4448
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (01-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1227
FT                 /product="Kiri-2_DEl_1p"
FT                 /translation="MVLPEGKRLKETSGSKRGRPSDAAYDTASPMFIAAMN
FT                 SRFDEQAQLIKSTIREVEERMLEVLQERLLGVTTEMKQMADRMLQLEQEVE
FT                 ELRSLKSQIGTVQGKLDAQRAESEACAVRMHGVPFVDGEKLRPLFNKLCFA
FT                 TNLVPAPRVRDIFRVRKSQNSLVDPPILIKLETTREKVSLLRALADFRRTT
FT                 KQQLSIHLLGFDSPAALYVNEQLTRDNFLIFKEAMRLKKQKSLAAVFTRRG
FT                 IVHVKCSGREDIYVIQQLDELSAITAAESALALSGSSALVAEVTPRAAQNS
FT                 FRK"
FT   CDS           1377..4160
FT                 /product="Kiri-2_DEl_2p"
FT                 /translation="MQVSTNNATASSLLRILCKQKVGLKIVHINAQSLVRK
FT                 MDEFRELFVGSNVDIVCVSETWFVSGYSDVPFECDGYVLHRSDRLEHAGGV
FT                 AIFVSNKYTSKLIKSNPIEGRVEYLFLEVVDPSSKSKMLICCIYRPHRMTE
FT                 YTDLLESVSDISVAYEHVILAGDLNSNMIREQSVQNDFNSLGLSLVNCQLP
FT                 THFTSTCSSLLDVFFVSEPSKILLYDQLCVPAFSKHDLIFMTYDFISDNST
FT                 RFFNYRDYKSINLNNLLTEFDNYDWTNIYDLTSPQDQLLLFNSNIRRLFEH
FT                 CVPLRTKTQKPAVQPWFNLEIKKRICLRDNAYKRWKRYKTESLHIIFKRLR
FT                 NLVTNSISSSKRRFYNDKFANAETPGQVWKDLRSLGIGKQNAMAKSDLDVD
FT                 ALNKKFSEVPSVIPTHNLYLNSTTSCDIIFSFMCVRPCEVLECILKVKSNA
FT                 EGLDNVSPKFIKMLLPKLICYITHIFNTVFTTSMFPDCWKIAKILPVPKSK
FT                 NEFRPISILPFLAKAFEQLVALQMQNHLENNNLLSCKQSGFKKHRSCTTAI
FT                 LKISEDIRQKIDDSKVTLLTLLDFSKAFDSINHEILCTKIRTLYNFSSSAI
FT                 NLIRTYLTNRVQAVVSGSQKSSFLPLTQGVPQGSVLGPLLFSLYVNDLPKC
FT                 ISVCDVHLYADDVQLYVSRPLSRISECIRISNNEIKQINDWADANGLRLNP
FT                 SKSKCILIHKKSIDFSCLPKIEVKNVEIEFVKRATNLGIEFNSTLTWDDHV
FT                 NKATGKAYGMLRQLSLSRNLIPQNIRMLVAKTCIIPTLFYGIEVFGSCDAI
FT                 SMRKLKVAFNSIARYVFNLNRREHITCYSNKIFELSLESWIKLKTLLFLRK
FT                 LLTKKEPQYLIEHVQLASSARTNNIVCKRLKLAMTEKHFFIQAVRYWNNLP
FT                 NNIKTIRNETHFKNVLINYLKGTS"
XX
SQ   Sequence 4448 BP; 1431 A; 914 C; 819 G; 1284 T; 0 other;
     gttatcgaat cgaatagacg cacttttgtg aagctccgct ttaacaccga aaatacctta        60
     aacacggctt taaaaaaaac taaaaactgc ttactacagc agcataaata agagtacaac       120
     acataaaagt tcattttgcc cggaataaat cggttctaag ctacaaaaat cgcttcctaa       180
     taaatccaca attttaagtg caacaacaaa tcatttaaga aacagtgcat aacataatac       240
     aagagcacag agacaaaaca ctcgacacat aaaacactca attgaaaaac tctcgtcacc       300
     aacacaacac caactcaacg aagaataaaa acaaaacaaa atatggtttt gccagaggga       360
     aaacgcttga aagaaacctc tggctctaag cgcgggcgcc cctctgacgc tgcctatgac       420
     actgcctcac caatgtttat cgcggcaatg aatagccgtt ttgatgaaca agcccagctg       480
     atcaagtcca ccatccgtga ggtcgaggag aggatgcttg aggtgctgca ggaacggctc       540
     ttgggcgtca ccacggagat gaagcagatg gccgatcgca tgttgcagct ggagcaggag       600
     gttgaggagc tgcgctccct aaaatcccaa attggcacgg tgcaaggtaa gcttgacgca       660
     cagcgtgccg aaagcgaggc gtgcgcagtg cgtatgcatg gcgttccttt tgttgacgga       720
     gagaaactaa ggccgctgtt taacaagctc tgcttcgcga caaaccttgt tccggctccg       780
     agagtccgcg acatttttag ggtccgaaaa tcgcaaaatt cactggtcga cccgccaatt       840
     ctgataaaat tggaaactac gagggaaaaa gtttcacttc ttcgcgcact ggctgatttc       900
     cgacgcacaa caaaacagca actgagcata cacctgttgg gctttgactc gccggccgct       960
     ctctatgtta atgagcagct cacgagagat aatttcctca tatttaaaga agccatgcgt      1020
     ttgaagaagc agaaatctct tgctgctgtt tttacgcgcc gtgggattgt gcacgtgaag      1080
     tgcagtggga gagaggacat ttacgttatc cagcaacttg atgagctctc agcgatcacg      1140
     gctgctgagt ctgctctcgc cctctctgga tccagcgcac tggttgccga agttacccct      1200
     cgtgctgccc aaaatagctt tcgtaaataa catctcttat gcggctgatc tctttatttt      1260
     tatagttttt aagagtaatt taggttttct agtggtaatc ttttttcgtt caaatctagc      1320
     ttgcgccttc tcaattcata tgtgcgtttc ccaatttacc ttatacccca ctattaatgc      1380
     aggtcagtac aaataatgca acagcgagca gtctgctgag aattctgtgt aaacaaaaag      1440
     ttggtctgaa gattgtccac ataaatgctc aaagcttggt cagaaaaatg gatgagttta      1500
     gggaactttt tgtaggatca aatgttgata tagtgtgtgt ttcagaaaca tggtttgtaa      1560
     gtggctacag tgacgtccct tttgaatgcg atggctacgt gttgcatagg tcagacagat      1620
     tagaacacgc aggtggtgtg gcgatttttg taagcaacaa atacacttcg aagcttatta      1680
     aatcaaaccc gatcgaaggt agagttgaat atttgtttct ggaagtcgta gatcctagtt      1740
     ccaaatcaaa aatgttaatc tgttgtattt atagacccca tcgaatgacc gaatatactg      1800
     atctcttaga gtccgtatca gacatatctg tggcgtacga acacgtaatc ctggctggag      1860
     atcttaatag caatatgatc agagaacaaa gtgtacaaaa tgactttaac tctcttggcc      1920
     taagcttggt aaactgccaa ctacctacgc atttcacaag tacctgtagc tctttgttag      1980
     atgttttctt tgttagtgaa ccgtcaaaaa tccttctcta tgaccagctg tgtgtgccag      2040
     cgttctctaa acatgacttg atatttatga catatgattt tatttctgac aattcaacac      2100
     gattttttaa ctatagggac tataaatcaa tcaatctcaa caacctacta actgaatttg      2160
     acaattatga ctggacaaat atttatgact tgacttcgcc acaggatcaa cttctattat      2220
     ttaattccaa cattcgacgg ttatttgaac actgtgttcc gttaagaaca aaaacacaaa      2280
     aacctgccgt acagccatgg tttaatttgg aaattaaaaa acgaatttgc ctgcgggata      2340
     atgcctacaa acgctggaaa aggtataaaa ctgaaagcct gcacatcatt tttaaacgac      2400
     tgagaaactt agtcacaaac tcgatctctt cctccaaacg tagattttat aatgataaat      2460
     ttgccaacgc agagactcct ggtcaagttt ggaaggattt gagaagccta ggcataggaa      2520
     aacaaaatgc tatggctaaa tcggaccttg atgtagacgc ccttaataag aaattttcag      2580
     aggttccttc cgtcattcct acacataatt tgtacctgaa ctcaacaaca tcctgtgata      2640
     ttatttttag ctttatgtgt gtacgtccat gtgaagtcct tgaatgtata cttaaagtaa      2700
     aatcaaatgc agaaggtcta gataatgtta gtcccaaatt tataaaaatg ttgctcccaa      2760
     aactaatttg ttatattacc catattttta atacagtttt taccacgtca atgtttcctg      2820
     attgctggaa aattgctaaa attttgcccg tcccgaaatc aaaaaatgaa tttagaccaa      2880
     tttccatctt gcctttcctt gcaaaggctt ttgagcaatt agttgccctg cagatgcaaa      2940
     atcacctgga gaacaataat cttcttagtt gtaagcaatc aggttttaaa aagcacagaa      3000
     gttgtacaac tgccatttta aagatatccg aagacattcg ccaaaaaatc gatgacagca      3060
     aagtaaccct cctaacactt cttgacttta gcaaagcatt tgactcgata aaccacgaaa      3120
     tactctgcac aaagattcgc acactgtaca atttctcttc aagtgcaata aacctcatcc      3180
     gaacatatct cacaaacagg gtgcaggccg tcgtctccgg gtcgcaaaaa tcttcatttc      3240
     tgcctctcac acaaggagtc ccacaaggct cagttttagg tccactgctt ttctcgctat      3300
     atgtaaatga tctccctaaa tgtatttctg tttgtgatgt gcacctatat gcagatgatg      3360
     tccagttata tgttagccgt cccctaagtc gaattagtga gtgtattaga attagcaaca      3420
     atgaaattaa acaaataaat gattgggctg atgcgaacgg gttaagactc aatccatcca      3480
     aatcaaagtg cattctaatt cataaaaaat caattgactt tagctgtctt ccaaagattg      3540
     aggtaaaaaa tgttgaaata gaatttgtta aacgagccac aaatctggga atagaattta      3600
     attccacctt aacgtgggat gaccatgtga acaaagccac aggaaaagca tatggcatgc      3660
     tcaggcagct ttccttatcc agaaacctta taccacagaa tatcaggatg cttgtagcga      3720
     aaacctgcat aattccaacg ttgttttacg gaattgaagt atttggttcc tgtgacgcca      3780
     taagcatgag aaaactaaaa gttgccttca actcaattgc gcgatatgtt tttaatttaa      3840
     accgcaggga gcacataaca tgttactcaa acaaaatttt tgaactaagc cttgagtcat      3900
     ggattaagtt aaaaaccctc ttatttctgc gtaaactcct gactaaaaaa gagccgcagt      3960
     acttaattga acatgtgcaa ctggcttcgt ctgccagaac aaacaacatt gtctgcaaaa      4020
     gattaaaatt ggcgatgacg gaaaaacact ttttcataca ggctgttcgc tattggaata      4080
     acctcccaaa caatattaaa actatacgaa atgaaacgca ctttaaaaac gtacttataa      4140
     actatttaaa gggcacaagc taattcttat tcttatttta atcctaattt ataattttta      4200
     atgtcaatct cattttgttt taaattcaat tcatttcttt atgttactca tgtcaccata      4260
     acttgttaaa atgttaaatt gttattgtaa cgtaatgtaa tgtaattgta cttctagtat      4320
     ttaagtttta ttgtacgaat cccaaagtat ttaagtttaa atgtaacaat cattaagtga      4380
     ccgatgaatc tgaaaagact tagtcttata tcgtcgggat actaaaacaa ataaaattaa      4440
     attaaaat                                                               4448
//
ID   Kiri-2_DK   repbase;    DNA;    INV; 4350 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4350
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1346-1346 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..1235
FT                 /product="Kiri-2_DK_1p"
FT                 /translation="MAPAPKRQREATSTDLKKDRPSDAPCPKLLDIIESKL
FT                 AEQTASISATITDAVQTSESRILQELGEKVNVMSETIEKLTQRVLQLEREV
FT                 AGVEQLKKRLLQLEASAQEAQHLGGRLGEVEAQVATQANACIAADLRVHGV
FT                 PYGEGENLKTLIHSLCFSLKLTPPPKIRDIFRIKPRRSNPAVDPAIIIKFE
FT                 HVRDKAAMLRAAGAYRKEFKQPLNLKLLGINSPAALYLNEQLSRENYAIFK
FT                 EAMRLKKLKRLHWVFTRRAVVHVTQYEGADAEIMRIDSMQKLHDLQANTSL
FT                 SLDISSAGNAEEQLREGTLFR"
FT   CDS           1362..4160
FT                 /product="Kiri-2_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FNSFDLTASRASSSAIIRVLAKQKEGLRICHINAQSL
FT                 CKKIDEFRYLFIKSNVDVVCVSETWFVPQLSDVLVECEGYDLYRSDREGHA
FT                 GGVAIYIRKTLKTKLVIKQPSGSSIEYLFLEVHGRGNSSNMLLGCVYRPHR
FT                 TIDCSEFIDELSSLCSEYTDVLITGDLNSNMLRERQLNSEMESLGLQLVNK
FT                 TLPTHFTTNSNTLLDVFFVSNTDRILLYDQVSVPAFSKHDLIYMTYEFNPN
FT                 CTDHTIFYRDFRNIDFELLSHELDTYDWNPMYNFSDVNSQLHYLTYCIDSM
FT                 YERFVPLKQKVLKAKDNLWFNNGIAAMINRRDIAYRRWKRYKIASYYDEFK
FT                 SLRMTANLMIANAKSNYFAQKFTSTMTMKQKWRELKMLGIGKSNHNSKLDI
FT                 DPNDLNRKFLQSNVPETLTNPYLDMTVNNICDNSFSFMCVSPCDVLESVLS
FT                 VKSSAVGLDNVHPKFIKIILPKILDKITYVFNSVLTMSSFPTCWKSAKIVP
FT                 VPKTNGEYRPISILPFLSKVFEQLLAKQINWFLRQNTLMCNNQSGFRQFRS
FT                 CTTAIIDITESIRQKLDDKHVTLLTLLDFSKAFDTVNHEILCTKLSKFFSF
FT                 ADTAVRLISSYLYGRSQTVITDTGPSDDMILTRGVPQGSVLGPLLFSMYVN
FT                 DLPSVLTNGNLHMYADDVQMYVSCPVARIFDCVDVCNLELSNISKWANMNG
FT                 LSLNPSKCKCLIVSKRSSNIPNLPXLRVNNGCIEYVEQVVNLGITMTNNLS
FT                 WSAHVIRVSGKIYGLLRQLYMTQKYLSADMRLMIAKAYLIPSLSYGIEIFG
FT                 NCDAASQHKLNVAFNNIARYIFNIRRGDPITAMANSIYGFNFKIWSNTRNL
FT                 ILLHKVINTREPSYLFEKLKFGTSARTNNLINFRHNLSSSERHFFIHTIRL
FT                 WNELPQNLKTIRSTPQFKNNLLKFYRNEN"
XX
SQ   Sequence 4350 BP; 1420 A; 829 C; 837 G; 1262 T; 2 other;
     gagagaaagt cagagaaaga cgtattttta tgaccgctcc gtgaaaataa ttaaaatcct        60
     ttgtaatctc acttattgtg gtggaaaata catttaattc caaaaatcac tcagtttttt       120
     atctgaaccg attgaaaaac actttaaaaa aaacactata aaaataatta aaagtgcaaa       180
     aataattttt gtttgcgcgc gaagtaacaa gcaaacgaaa cataaaacac tcaaacagaa       240
     gtgggcaagg aagaacacag aagacaaagc ataatccgtc gcacgcacac aaacaaatgg       300
     ctccagcacc caagcgccag cgtgaagcta cgtccacgga cttgaagaag gatcgaccct       360
     ctgacgcacc gtgtcctaaa ttactggaca tcatcgagag caagctagcc gaacaaacag       420
     ccagtatatc agccacaata actgatgcgg ttcaaacatc cgaaagccgc atactacaag       480
     agctgggcga aaaggtaaat gtgatgagtg agaccattga aaaactcact caaagggtgc       540
     tccagctgga aagagaagtc gccggtgtgg agcagctgaa aaagcggttg ttgcagctgg       600
     aggcctctgc tcaggaggct caacatttgg gtgggcgtct cggagaagtg gaggctcagg       660
     tggctactca ggctaacgcc tgcatcgcgg cagacttgcg agtccacgga gtcccctatg       720
     gtgaaggcga aaatttaaaa actttgattc actccctatg cttcagcctg aaactcacgc       780
     caccgcctaa gatccgcgat attttccgga taaagccgcg gagatctaat ccagccgtgg       840
     atccggccat tattattaaa tttgaacacg tgcgagataa ggccgcgatg ctgcgtgcgg       900
     ctggtgcata ccgaaaagaa tttaagcagc cactaaacct aaaacttttg ggtatcaatt       960
     ccccggcagc cctctactta aatgagcagc tttcaagaga gaactacgct atcttcaaag      1020
     aggccatgcg cttaaaaaag cttaagcgtc tgcactgggt gtttacacga cgggcggtcg      1080
     tccatgtcac ccaatacgag ggagccgacg cagagataat gcgaattgat agcatgcaga      1140
     agctccacga cctgcaagct aatacatcgc tatctctgga tatctcgtct gctggaaatg      1200
     ccgaagagca actaagagag ggaactcttt ttcgttagta tttgtctctt atgtaggttt      1260
     aataggctaa gttctttaag agagatcagt ttaatagaat tctttttttg taattatttt      1320
     atagttctta aattgcgtgt gtgtttaatt tattatttta attcaatagc tttgatttaa      1380
     cagcatccag agcgagtagt agtgcaataa ttagggttct tgcaaaacaa aaagaagggt      1440
     tgcgtatatg ccatattaac gctcaaagct tatgcaaaaa aattgatgag ttccggtatt      1500
     tgtttattaa atctaatgtt gatgttgtgt gtgttagtga aacttggttt gtccctcaac      1560
     ttagtgatgt cctagttgaa tgtgaaggtt atgaccttta tagatctgac cgcgaggggc      1620
     atgctggagg ggttgccatc tatattagga aaactttaaa aaccaaatta gtaatcaaac      1680
     aaccctctgg cagttcaata gaatatcttt tcctggaagt acatgggcgt ggaaactcat      1740
     cgaatatgct ccttggatgt gtctacaggc cacacagaac gattgactgt agtgaattta      1800
     ttgacgagtt atcttcttta tgttccgaat acactgacgt tttaataact ggggacctga      1860
     atagtaatat gctaagggaa cgacaattaa actctgaaat ggaaagtctt ggactacaac      1920
     tagtaaataa gactctacca acacatttta cgacgaattc aaatacactt ctagatgtct      1980
     tctttgtcag caatacagac agaattcttc tttatgacca ggtctcagtg ccggctttct      2040
     caaaacatga cctaatatat atgacgtacg aatttaaccc taactgtact gaccatacaa      2100
     ttttctatag ggactttagg aacattgact ttgaacttct aagtcatgaa ttggatactt      2160
     atgattggaa ccctatgtac aattttagtg acgttaactc ccaactgcat tatttaacgt      2220
     actgcattga ctcaatgtac gaaaggtttg tgccacttaa gcaaaaggtt cttaaagcca      2280
     aagataatct gtggttcaat aatggtattg ctgcaatgat caatcgacgc gatattgcct      2340
     atagacgctg gaaaagatac aaaattgcaa gttactatga cgaatttaag tctttgagaa      2400
     tgactgctaa cttgatgatt gccaatgcaa agagcaatta tttcgctcaa aaatttacca      2460
     gtacaatgac aatgaaacaa aaatggagag aacttaaaat gttgggaatc ggaaaatcaa      2520
     accacaatag caaattagac atagacccca atgatctcaa cagaaaattc ctgcaatcaa      2580
     acgtacctga aacattgact aacccttatt tggacatgac tgtgaataat atctgtgata      2640
     atagctttag ttttatgtgt gtttcgccgt gtgacgttct agaatcagtc ctttctgtaa      2700
     aatcgagtgc tgttgggctt gataatgttc atcccaaatt tataaaaatt atattgccaa      2760
     agattttaga caaaataaca tatgtgttca attccgtttt gactatgtct agtttcccta      2820
     cctgctggaa atcagccaaa attgttcctg tcccaaaaac taacggcgaa tataggccga      2880
     tatccatact gccattttta tcsaaagtct ttgagcaact attggccaaa cagatcaact      2940
     ggtttctgag acaaaacacc ctaatgtgca ataaccaatc tggctttaga caatttagaa      3000
     gctgtaccac tgcaataata gatataactg agagcattag acaaaaactt gatgacaaac      3060
     atgtgacgtt attaactctt ttggacttta gcaaagcctt tgacacggtt aaccacgaaa      3120
     ttttatgtac gaagctttca aagttcttct cattcgcgga cactgctgtt agattaattt      3180
     cgtcatattt atatggcaga tcgcaaactg tgatcactga cactggacca tctgacgata      3240
     tgatcttgac gcgaggtgta cctcaaggct ctgttcttgg tccactactg ttttctatgt      3300
     acgtgaatga cctcccgagt gtactaacca atggtaatct tcatatgtat gctgacgatg      3360
     ttcaaatgta cgttagttgt cctgttgcta gaatttttga ctgtgtagat gtatgtaacc      3420
     ttgaattgtc aaatattagt aagtgggcaa acatgaatgg actctccctt aatccgtcaa      3480
     aatgtaaatg tttaattgtt agtaaaagat cgtcaaatat tccaaatctt cctmgtcttc      3540
     gtgttaataa tggctgtatt gagtatgttg agcaagttgt taatctaggt attaccatga      3600
     ctaataacct ttcatggagt gcacatgtca taagggtatc cgggaaaata tacggcctac      3660
     ttaggcaact ctacatgaca caaaagtacc tatcggctga tatgcggctt atgattgcaa      3720
     aggcttatct cataccttct ctaagttatg ggatagaaat tttcgggaac tgtgatgctg      3780
     cctcccaaca caaattaaac gttgcattta acaacattgc aagatacata ttcaatatta      3840
     gacgaggtga tcccattacg gcaatggcca atagcatata cggatttaac tttaaaatct      3900
     ggagcaatac cagaaatcta attcttttgc ataaggtaat aaatacaaga gagcccagtt      3960
     atctatttga aaagctaaaa tttggaacat cagcaagaac caataatctc attaattttc      4020
     gtcataatct ttcgtcttct gaacgccact tttttattca cactattcgc ttgtggaatg      4080
     aacttcctca aaatttaaaa acaataagaa gcacgccgca atttaagaat aatttactaa      4140
     agttttatag aaatgaaaac tagacataat aaaataaatg ttcaattata acataaggac      4200
     attcaaattg ttagaataag atatacatgt atttcaatct tgtgtagttt taagacagat      4260
     aagaaatttt taaaaaattg acccgttgtg actatcgcac taatttataa gttttaaact      4320
     tgtagcgtta ggaatttatt taccaataaa                                       4350
//
ID   Kiri-2_DPer repbase;    DNA;    INV; 4410 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4410
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1661-1661 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..1236
FT                 /product="Kiri-2_DPer_1p"
FT                 /translation="MSSSTAPPTKRTRNNAGAASERLSDALSPQLLEMLKD
FT                 RFXEQTNQIASHVRXAEQRILSSLMERLDSIAGEVKQMGARVTRSQRDRLD
FT                 ERVERLDREVADLRTLGGRVGGIEARLAAEHMATSACELRIHGVPFVEGEN
FT                 VRALFNKLCFNLQLTPPPRIRDVFRARQTQHSNVDPVIIVKMENVREKINL
FT                 LSKIGIYRRESKRQLGLQFFGFGSEAAVYVNEQFLRENYIIFKEAMRMKKH
FT                 KILAAVFTRRGLVHVRSYDTESVQCIERMDELLSLAPSNEPAQSLPLSSTA
FT                 SPTRASVGSEEAAANSFRS"
FT   CDS           join(1423..2487,2463..4136)
FT                 /product="Kiri-2_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KWSQSCTHKCKSLLRKIDEFRFLFTQSNVDVICVSET
FT                 WFNSDLCDLSIVCDGYVVFRSERIGHAGGVAIYVNTKLKCNVKCTQPTECP
FT                 IEYLFLEIASKMNKKILLGCIYRPNCTIDYEPLLNIISDISVLYTDIILAG
FT                 DLNSNLLKESHLLDNFASLGLYAVNTTLPTHFSNTCDTLLDIFFTNDHSKT
FT                 LLYDQVSVPAFSKHDLIFLTYDLTLDHKANSFTYRDFKNIDYNELYLEFTA
FT                 CDWASIYLSPFVDCQLSVLNNNIQYLFNKFIPLKTKVTKPRQNPWFNNEIK
FT                 KITHQRDVAYSKWKRYKTDYFRLRYKELRANANKSIRSAKRSYYKSKFQNC
FT                 STIKQRWKERIVAKMERKNSIGIGKCKQKTELDINVEELNKKFSIIDVPEA
FT                 TSNTYLNSVPLGDNSFSFVCVNQCDVLXSILKVKSNAEGLDNISPKFVKIL
FT                 LPKILSHITYIFNTAITTSSFPTEWKKXKILPIRKPNNDFRPISILPFLSK
FT                 ALENLMSLQIEHYLTNYSLLNXKQSGFRKKRSCISAVTDIVEDIRQQLDKN
FT                 WVTFLTLLDRSKAFDSVNHNILCTKLTXLFNFSGTAVNFVKSYLTNRLQAV
FT                 VSGTYASTFRVLTRGVPQGSVLGPLLFSIYVNDLPSVLSDCEVHLYADDVQ
FT                 IYVSSPVNEINLCVNMSNKMLSLIEKWAKENGLGINPRKSKCIVIAKKRID
FT                 TKNLVNVHIGNTPISYEDCAVNLGITFSSTISWSKHISKATGRTYGLLRQL
FT                 SASKTFLPEEIRVLIAKVILIPTLFYGVEIFGHCDARDLHTLVVCFNSIVR
FT                 YAFNLSRFDHVSHLTRKILDLNLTPWIDFRTLVYFHKIVTTQEPIYLYRKL
FT                 NPATSQRTNNYICPRIQTLCSKRQFFINAIRLWNNLPHSIKTIRSATQFYF
FT                 KVKKHLGNQ"
XX
SQ   Sequence 4410 BP; 1451 A; 894 C; 804 G; 1249 T; 12 other;
     taattgtcta aaaaaaggga atttcgtctg awatcaccaa atagacactk gcagacttga        60
     agccgcaaat aataaacata ttaaagtgaa aaaaagcttt ttatttattt ggcaaacaaa       120
     cactgtgctc ttcgattttg ttagtgttta caactcaaat cgagcatcga acataatctt       180
     cgaacagcag cacactcaca tttacacaga aacataaaca cttatacgcg agatacctga       240
     actgcacaaa aacwaaccaa atcacaaaag akacgtgaaa agcatacaca cagacataca       300
     aaaatgtcat catctactgc accgccaaca aagcgcaccc gcaacaatgc tggggcagcg       360
     agtgagcgcc tctccgacgc cctctcgcct caattgctgg agatgctcaa agaccgtttc       420
     saggagcaga ccaaccaaat tgcgtcccat gtccgaaasg cagagcagcg catcctcagc       480
     agtctcatgg agcgcttgga ttcgatcgct ggtgaggtaa aacagatggg tgccagagtc       540
     acccgctccc agagggatcg gctggatgaa cgggttgagc ggctggaccg ggaagtggct       600
     gatcttcgca cactgggtgg gagagtgggt ggcatcgaag cgagattggc agccgaacac       660
     atggcaacga gcgcgtgtga gctgcgaatc cacggcgttc cctttgtgga gggagaaaat       720
     gtgagagctc tcttcaacaa gctctgcttc aatctacagc tgaccccacc accaagaatc       780
     cgagacgtat tcagggccag acaaacacaa cactcaaatg tcgatcccgt tataattgtt       840
     aaaatggaaa acgtccgcga gaagatcaat ctcctcagta agattgggat ttaccgccgc       900
     gagagtaaga gacaactggg cttacagttc tttggtttcg gctcagaagc tgctgtctac       960
     gtcaacgagc agtttttaag agagaactat ataatattca aagaggccat gcgaatgaag      1020
     aagcacaaaa ttctagcagc tgtctttact cggcgcggcc tcgtgcatgt acgatcctat      1080
     gatacagaga gcgttcaatg cattgagcgt atggatgagc ttttgtcgct cgcaccatct      1140
     aatgagcccg cacagtctct ccccctctct tcgactgcct cccccactcg cgcctcggtt      1200
     ggatcggaag aagcagcagc aaatagcttt cgctcttaat aacttacata ctgctctctt      1260
     aatcttatca gttaggttat tgtttttatt attttttttt cacagttctt acacacagtt      1320
     agtttattgt ttttcaaata tcgagttgcg cccctaataa gttctcactt taataatgaa      1380
     tggtgagata ggtagtatga ttaaaataat tagtaaccat agaaatggtc tcaaagttgt      1440
     acacataaat gcaaaagttt gttaaggaaa atcgatgagt ttagatttct ctttactcag      1500
     tcaaatgtag atgttatatg tgtatctgag acgtggttta actctgatct atgtgatttg      1560
     tcaattgtgt gtgatggtta tgttgttttt cgttcggaac gtattgggca tgcaggtggc      1620
     gttgctatat atgttaatac aaaattaaaa tgtaatgtta agtgtacaca acctactgaa      1680
     tgtcctattg aatatctctt cttggaaatc gcgagcaaaa tgaacaagaa aattttatta      1740
     ggctgtattt atcgacccaa ttgtacaatc gactatgagc cacttttaaa tattatctcg      1800
     gacatctcgg tgttatacac tgacattata cttgcaggtg atctcaatag caatctcttg      1860
     aaagagagtc atctattgga taactttgcc tccctgggct tgtacgctgt taatacaaca      1920
     ttgcctacac atttcagcaa tacctgtgat acacttcttg acattttctt cactaatgac      1980
     catagcaaga ccctattata tgaccaggta tcagtaccag cattctctaa acatgacctt      2040
     atcttcctga catatgactt gactttggac cataaagcta attcctttac ttatagagat      2100
     tttaaaaata ttgactataa tgaactttac ctagaattta ctgcgtgtga ctgggcttcc      2160
     atttaccttt ctccctttgt tgactgtcaa ttgagtgttt tgaacaacaa tattcagtac      2220
     ttgttcaaca aatttatacc actaaaaacc aaagtcacca aaccaagaca aaatccatgg      2280
     tttaacaacg agataaaaaa aataacgcat cagcgagatg ttgcctacag taaatggaag      2340
     cggtataaaa cggactactt ccgtttaagg tacaaagagt taagagcaaa tgctaacaaa      2400
     agtataagat ctgctaagcg tagttactat aaatctaagt tccaaaattg ctctaccatt      2460
     aagcaaagat ggaaagaaag aatagtatag gaataggcaa atgtaaacag aagactgagc      2520
     tggacataaa tgtcgaagaa cttaacaaaa agttctcgat aattgatgta cctgaagcga      2580
     caagtaacac gtacctgaat agcgttccac ttggtgataa tagttttagc tttgtgtgtg      2640
     tcaatcaatg tgatgtcctc gmgagcatac ttaaggtgaa gtctaacgcc gaaggtctcg      2700
     ataacattag cccgaaattt gtgaaaatct tacttcctaa gattttgtct cacatcactt      2760
     atatcttcaa cacggctata actacgtcct cgtttccaac kgaatggaaa aaakcgaaaa      2820
     ttttaccgat ccgaaaaccc aacaacgact ttaggcccat ttcaatactt ccgttcctgt      2880
     caaaagctct agaaaatctc atgtccttac agattgaaca ctacctgact aactactcgc      2940
     tattaaacma caagcagtca ggttttcgaa aaaaaagaag ttgtataagc gctgtaacgg      3000
     atatcgtcga agatattcga cagcaactcg ataagaactg ggttacgttt ttaacacttc      3060
     tcgaccgcag taaggcgttc gactcagtca accataatat tctctgcaca aaactgacca      3120
     amttattcaa cttctcaggg actgcggtca attttgtaaa atcgtaccta acaaatagat      3180
     tgcaggcagt agtatccggt acatatgctt ccacttttag ggttcttaca cggggagtcc      3240
     ctcagggatc agtactaggc cccttactgt tttccatata tgttaatgat ctacccagtg      3300
     tcttgtctga ctgtgaagta catttatatg ctgatgacgt ccaaatttat gttagtagtc      3360
     ccgttaatga aataaatctt tgtgtcaaca tgtccaacaa aatgctttcc ctaattgaga      3420
     aatgggcaaa agagaatggc ctgggaataa atccwagaaa atcaaaatgt attgtaattg      3480
     ccaaaaaacg gattgataca aaaaatctcg tgaatgtaca cataggcaat acacctattt      3540
     cctacgaaga ttgtgcagtt aatctgggga taacattcag tagcactata tcatggagta      3600
     aacatatttc aaaggcaact ggacgtacat atggtctgtt gcgtcagctc tcagcatcta      3660
     aaactttttt gccagaagaa ataagagtat taattgctaa agtcattctc atccccactc      3720
     tcttttatgg tgtagagatt tttggtcatt gtgacgctcg tgacttgcac acattagtag      3780
     tatgctttaa ttcaattgtc cgttatgctt ttaatttaag tcgttttgac catgtttccc      3840
     acctgactcg taaaatactt gacctcaact tgaccccatg gatagatttt agaaccttag      3900
     tatactttca taaaattgtg accacccaag aaccgattta cctttaccgc aaacttaacc      3960
     ccgctacatc acaaagaact aacaattaca tttgtcctcg aattcaaacg ctttgctcga      4020
     agaggcagtt cttcattaat gctattcgct tatggaacaa tcttccccat agcattaaaa      4080
     ccattaggag cgcaactcaa ttttacttta aagtcaaaaa acatttaggt aatcaataaa      4140
     attaaattaa caaattcatt aaaaaaaaaa aaaaataaat aaataaaaat aatagaaaaa      4200
     caaataaaat agtagaataa ataattaaaa tttaaaaagt aatcaaaatt ttgtaaaaac      4260
     aattataagt gtaagctttt caaaaatgtt aaatgtatct attagattta agtaaataac      4320
     tttccacaag gatgcgtaag gtgactagcg cattaaacat aagtgtaaac ttgtagcgct      4380
     aggataatgc atgaaataaa caaaaataaa                                       4410
//
ID   Kiri-2_DSuz repbase;    DNA;    INV; 4368 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4368
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 596-596 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. The consensus is ~92% identical to
CC   that of Kiri-7_DTa from D. takahashii.
XX
FH   Key           Location/Qualifiers
FT   CDS           303..1037
FT                 /product="Kiri-2_DSuz_1p"
FT                 /translation="MPVPKRAREATXTDLKPGRDSDAPSPHLIQLLDRLIG
FT                 DKLKAHAEQQTEKLTSVMRSCEERIVTSLEGKLSDVCDQVVQLAGRVTQLE
FT                 EELKKLQALKTNFDKLEAKVEKVHSRGDDIQHLEFEIADMRSLEKQVGELS
FT                 AKISAQENADVQCEVRLHGVPYKEVESLKTLFNTLSFSLGITPAPKLLEIF
FT                 RVKTRNGTSTIVDPITKLKFEHLRDVLQETAGSGAVRFKLECGNLFKRAIN
FT                 EGKL"
FT   CDS           1311..4163
FT                 /product="Kiri-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="LCVYLTLNCVTYFYVLSMDSPLISRTSSQAIIRILAK
FT                 QKPGLKIIHLNAQSLAKKIEEFRFLFINSNVDVICVSETWFVSDVSNMSIM
FT                 CESFNLFRSDRSGRGGGVAIYINKKLNAKKVCVQPETSAIEYIFLSIFNKR
FT                 ENTSILIGCIYRPHKTTEYSELIELLSTLSLNYSDVILAGDFNSNILIEKH
FT                 LSNDMESLGLFPVNFKYPTHFSTTCNTLLDVFFVSDCKKIQNYDQISLPAF
FT                 SKHDLIFFTYNINIDYNDYYIEYRDFINIDYALLSADLDSCDWNSLYCTAE
FT                 VNTQLEILQRKVKILYDRTVPLKRKMCKHRAKSWFNYNIKNLIQKRDKSYA
FT                 KWKRYKTENFYNXFKSNRKLVNETIAEAKRNYYIHKFQHSKNNKNTWTILR
FT                 ELGIGNIKPTLSCDTDLDDLNHKFLQSTVPEFTNNTYLTSLESCDRNNCDI
FT                 IFSFNCVSQCDVLKSILSIKSNATGLDEINPKFLKLILPKILPVITHILNC
FT                 SITTSTLPKSWKIAKILPIPKSGTEYRPIAILPFLSKVLERLIANQIVSFM
FT                 DAHNILSEKQSGFRKNRSCTTAVLKITEDIRLQMDRCNITLLTLLDFSKAF
FT                 DTVNHEILLTKLSRLYMFSTSATSFMKSYLSQRSQLVATQSSKSSILSVKR
FT                 GVPQGSILGPLLFSLYVNDLPNILTKCDMHMYADDVQLYVSCPVSQINECX
FT                 RVCNSELDMVCKWAERNRLSLNPLKSKCIVIHNRSFNTDHLEKLSLNGQQL
FT                 NYVDRASNLGFTINSTLSWSNHVNCTIGKMYGILRQLNDTKTFLSTNLKML
FT                 IAKTKLTPLLFYGVEVFGNCDATSQHKLLVAFNNVARYIFNRRGTDRISDA
FT                 TFKIFDMPLKVWIEYKTLVLLHKVITTYEPKYLFSKLKFSASNRTNNLICQ
FT                 KVKHAYAEKHFFICAVRSWNKLPHPXKTIKSATQFKTKLHTHLQSSI"
XX
SQ   Sequence 4368 BP; 1498 A; 825 C; 759 G; 1273 T; 13 other;
     gagtcgggtc caatcaattt atggatttac attgaattaa agcagtctaa twatttcaaw        60
     aaasgaagaa aacgaatgtt ttatggtttc cgagcaacga tataatcgaa aattgttgtg       120
     aataaatatt ccamatttta actcgcaggc acaagccgaa aatcactcaa taaaacaagc       180
     acgaaacact cgaaaaccaa maagaaaact aaaaattgtc ttgcactagc tcaagaagtg       240
     tataacaaaa caacagaagg cactcaatta acmaaattca ctcagaaaca aaacacwcag       300
     ccatgcctgt ccccaaacga gcacgagaag ccacggmcac cgatctgaag cctggtcggg       360
     actcagatgc cccttcacca catcttatcc agcttctsga tcggcttatt ggggacaaat       420
     tgaaggccca tgcggagcag cagaccgaaa aactaacgtc tgtaatgcgt tcttgcgagg       480
     agcgtattgt tacttcactg gaagggaagc tgagcgacgt atgcgaccaa gtggttcaac       540
     tcgcaggacg ggtgacacaa ctggaggagg agttaaaaaa gttgcaggct ctaaagacga       600
     acttcgacaa gttggaggcc aaagtagaga aggtgcactc gcgtggtgac gacatacaac       660
     atctggagtt tgaaattgca gatatgcgaa gtctggagaa gcaagtgggt gagctatccg       720
     caaaaatatc tgctcaggaa aatgctgatg tccagtgcga agtcagattg cacggtgtgc       780
     cctacaaaga ggtcgaatca ctaaaaacat tgtttaatac actctccttc tcacttggaa       840
     tcacaccggc accaaaactt ttggagattt ttagggtcaa aacacgaaac ggaacgagca       900
     ctattgttga cccaataaca aaactcaaat tcgagcactt gagggacgta ctccaagaaa       960
     ccgctggttc tggggctgtt aggtttaaac tcgaatgcgg caatttattt aaacgagcaa      1020
     ttaacgaagg aaaactataa catttttaaa aaagcaatga ctatgaaaaa gcaaaagctc      1080
     ctatcagctg ttttctctcg tcgtggtttt gttcacgtta gagtgcatgg gagagaagat      1140
     gttatgtgtc tggagaccat gcataagctt tatcagctgc agttcgagtt gtctccagaa      1200
     cagctgtctg cgtctagttc gtttcgcaca taaaattagc ctaaaattat gcttagattt      1260
     ttgtcttttt atctttccta gtatttactg ttatatcttt agaaaattaa ttgtgtgtgt      1320
     acttaacttt gaattgcgtg acctattttt atgtattaag tatggatagt ccactcatct      1380
     ccaggacaag cagccaggca ataatcagaa ttctagccaa acaaaaacca ggcttaaaaa      1440
     taatacactt gaacgcgcaa agtttagcta aaaagattga ggaattccgt tttttattta      1500
     taaactcaaa tgttgatgtt atctgtgtat ccgaaacgtg gtttgtctcc gatgttagta      1560
     atatgtcaat tatgtgtgaa agttttaatc tttttcgctc cgatcgtagt ggtcgaggtg      1620
     gaggagttgc tatttatata aacaagaaac ttaacgctaa aaaagtatgt gttcaaccag      1680
     agacgagtgc gattgaatat atatttctaa gtatcttcaa caaaagagaa aacacatcaa      1740
     ttttaattgg ctgtatctac agaccacaca aaacaacaga atactctgag ctgattgagt      1800
     tgttatccac cctctcattg aattactccg atgtaattct tgctggcgat ttcaacagta      1860
     atattttaat tgaaaagcat ttgtcaaacg atatggaatc acttggttta tttcctgtaa      1920
     actttaaata tcctacacat ttttccacta cctgcaacac cctacttgat gtattctttg      1980
     ttagtgactg taaaaaaatt cagaattatg accaaatatc gttgcctgcc ttttccaaac      2040
     atgatctgat ctttttcacg tacaacatta atattgacta caatgactat tacatagagt      2100
     atagggactt catcaacatt gactatgctt tacttagtgc tgatttagac tcttgcgact      2160
     ggaattcctt atattgcact gctgaggtta acactcagct agaaatttta caacggaagg      2220
     taaaaatcct ctacgacaga acggttcctt tgaagcgcaa aatgtgtaaa cacagggcca      2280
     aatcgtggtt taattataac ataaaaaacc taatacaaaa gcgcgacaaa tcgtatgcga      2340
     aatggaaacg ctacaagaca gagaattttt acaacgawtt taaatcaaat agaaaattgg      2400
     tcaatgaaac cattgcagag gcgaaacgaa attactacat acataaattc caacattcaa      2460
     aaaacaataa aaatacatgg acaattttaa gggaattggg gatcggcaat attaaaccaa      2520
     ctttaagctg tgatactgat cttgatgatc taaatcataa gtttttgcaa tcgaccgtac      2580
     ctgaattcac taataacacc tacctgacat cccttgaatc ttgtgataga aataactgtg      2640
     atattatttt tagttttaat tgtgtcagcc agtgcgatgt ccttaaatca attttaagca      2700
     ttaaatccaa cgcaacgggt ttagatgaga taaatccaaa atttttaaaa ctaatccttc      2760
     ccaaaattct tcctgttata acacacattt taaactgctc catcaccacc tctacgcttc      2820
     ccaaatcctg gaaaatagca aaaatattac caattcccaa atcaggtaca gaatatcgac      2880
     ctattgccat cctgcctttt ttgtcaaaag ttcttgagcg gttaattgct aaccaaattg      2940
     tgagttttat ggatgcacac aatattttat ctgagaaaca gtccggtttt cggaagaaca      3000
     gaagttgcac aacagctgtt ttaaaaatca ctgaagatat tagactacaa atggatagat      3060
     gcaatattac tttattgacg cttttagatt ttagtaaggc ttttgacacg gtaaaccacg      3120
     aaattctttt aactaaacta agtcgtcttt atatgttttc aacctctgca acaagtttta      3180
     tgaaatccta cttatctcaa cgatcacaac tagtagctac acaatcatct aaatcatcta      3240
     ttctgtccgt aaaacgtggt gtaccgcagg ggtccattct tggacctctt ttgttcagtc      3300
     tttatgttaa tgatttgcca aatattctta caaaatgtga catgcacatg tatgccgacg      3360
     acgtccaact atatgtaagc tgtcctgtta gccaaattaa tgaatgtktt cgtgtctgta      3420
     acagtgaatt agacatggtt tgcaaatggg cagagcgaaa tagattatcc ttaaaccccc      3480
     tcaaatcaaa atgcatagta atacataacc gatcttttaa cacagatcat ctggaaaaac      3540
     tttccttaaa tggtcaacaa ttaaactatg tagacagagc gagcaacttg gggtttacaa      3600
     taaattccac tctatcctgg agtaatcacg taaattgtac gattgggaaa atgtatggga      3660
     tacttagaca acttaacgac acgaaaacct ttttatcaac aaatttaaaa atgcttattg      3720
     cgaaaactaa gctgacacca ctactattct atggagtcga agtctttgga aattgtgatg      3780
     ctactagcca gcacaaactc cttgtagcct tcaataatgt agcgagatat atatttaatc      3840
     gcaggggcac agatcgaatc tctgatgcaa cttttaaaat ttttgatatg ccgctaaaag      3900
     tctggatcga gtacaaaaca ctagtactgt tgcacaaagt aataacaact tacgagccaa      3960
     aatatctctt tagtaaacta aaattcagcg cttccaacag aacaaacaat ctaatttgtc      4020
     aaaaagtaaa acatgcctat gctgagaaac acttttttat ctgtgctgta cgttcttgga      4080
     ataaactacc acatccawta aaaacaatta agtctgccac gcaattcaaa acgaaattac      4140
     acacacatct tcaaagcagt atataattta maacaaaact tagtccttaa gaatttaatg      4200
     tttcatatgt caaatgtcat agttttaatg tcttgtatta gaactaatag ttaagaaaat      4260
     tttattatgt taatgaagta aattgaattg tgactagcgc actaatttat aagtattctt      4320
     gtacttgtag cgttaggaag agtgaaaacc aaaataaata aataaata                   4368
//
ID   Kiri-2_DTa  repbase;    DNA;    INV; 4398 BP.
XX
AC   .
XX
DT   09-JUN-2012 (Rel. 17.08, Created)
DT   09-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4398
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1709-1709 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1305..4142
FT                 /product="Kiri-2_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="LFLNCVCLCFLFNVSDIEASQSNSRTILRVLAKQNNG
FT                 LHICHINAQSLCKKIEEFRYLFVKSNIDVLCVSETWFAPQLNDAMVACDGY
FT                 DMYRSDREGHAGGVAIYINTKLXTKLICKQPTGSAVEYLFLQVNGSRSASN
FT                 MLLGCVYRPNRTVDYSDFVEVVASLCCKYNNVVITGDFNSNLLIERHLNLE
FT                 MESLGLIPVNFTTPTHFSNTLNSLLDVFFVNDRSKTLLYDQVSVPAFSKHD
FT                 LIYLTYEFDPIFLDHTINYRDFRRIDLDLLSQHLDALDLNYMHTLTDVNAQ
FT                 IGFLTECIESLYERFVPLKQKIIKATGNPWFNNAIALKISQRDSAYRRWKR
FT                 YKIPDYYKEFKSLRTVVTTLIVNAKRAYYSQKLQTAMSMKQKWKELKNLGV
FT                 GKSKSKSNITADPNELNIKFVQSNVPETMTNPYLDIIVNNICDNSFSFMCV
FT                 SSCDVLDSVLKVKSNAVGLDNIHPSFIKIILPKIIDKITYVFNTAFTTACF
FT                 PNIWKMAKIIPVPKANDEYRPISILPFLSKVFEQLMAQQINLFLGQNSLMC
FT                 NNQSGFRKFRSCTTAILDITENIRQKLDSNQITFLTLLDFSKAFDTVNHEI
FT                 LCTKLLKFFNFSGPAVKLISSYLSGRMQAVFTESGYSEPLLLKRGVPQGSV
FT                 LGPLLFSMYVNDLPTVLSNCNVHLYADDVQMYVSCPIGRILDCVNLCNVEL
FT                 SNVSKWATSNGLSLNPSKCKCIVISKKSSSIRNLPNLRIDNSPIFYVEQVA
FT                 NLGITINSNLSWSAHVVKSVGRSYGQLRQLYLSQQFLPTSIRLMIAKSYLL
FT                 PTLCYGIEIFGHCDSASQHKLNIAFNNIARYVFNIKRGEHITSFANSIYGF
FT                 NFKSWSNARNLILLHKIIKTKEPSYLYEKLKFGTSTRTRNIINIKHKLASS
FT                 DRQFFIHTIRLWNELPQHLKIIDSTTQFRDKLFTFLKSQSTN"
XX
SQ   Sequence 4398 BP; 1462 A; 826 C; 826 G; 1278 T; 6 other;
     attcgaacta gacacacgta cacagaaaga gtcaccaaaa agtctttgtt tttgtgaawt        60
     tcccgcgtct aaaaaaatcc aaaattgttg aaaagtgtcg tttaaacttt gtgtagtttt       120
     gatccgtgca gtgaattttg ctaaaacaat taaatacgtt ggcaataagc aaatttatat       180
     ttgccagtac cagccaaagc aaacacaaaa caagcgtcga gctaagcaaa acggaatccg       240
     aaaaaaactc acacgcacac gcactcacta aaacactgaa atggctccag caacaaaacg       300
     cttgcgcgaa aatacgtcca cggaccttaa aaaagaccgt ccaaatgawa cactctcacc       360
     tacgttgatt gagttggtag agcagaaatt tgctgagcag actgctaaca ttactgccac       420
     gataactgcc tcaatacaaa aatctgagga tcgcatttta caagaaatgc atgaaaaagt       480
     taacgtgatg agtggaaaaa tagaagaact cactcaacgg gtgcaccaac tggagaagga       540
     ggtcgcagtg gtggaaaaac taaaggagag gatgatgcaa ctagaggccg agacccaaga       600
     tgcacaaact ctaggagggc gggttggaga gattgaagcg cgggtggcaa cgcaagcgaa       660
     cgagtccatc gcagcggacc tgagagtcca tgggtgcctt accaagataa tgaaaactta       720
     aaatcattat ttcacacact gtgtttcaat ctgaaactta cgccgccgcc gaggattcgc       780
     gaggcctttc gcatatcacc gagaaggcca aatccgaccg tagacccggt cattataatt       840
     aaattcgagc acggcgcggc cgcaatacgc gcgcggcggt gcgtaccgaa gagaatttaa       900
     gcagccacta acccttcaac tgctgggaat gaactcgccg gctgctgttt accttaatga       960
     gcagctttca agagaaaact acgagatctt cagggaggca gacgcctaaa aaagcttaag      1020
     cgcctctttt gggtcttcac acggcggggg attgttcacg tcactcaatg cgtgggagct      1080
     gaggtaatgt gcgttgagag tatgcagaag cttcacgatc tccaaatgaa tgtttcgctc      1140
     tctcttaaca aatcatctgt tgagaaggaa ggcgggcaag agaagctgca gatgaccaaa      1200
     atctttttcg ttagaatata tctcttaaat atgaaatgta ttaggattag ttatacttgt      1260
     gtaagagaag tcgtaatggt tagtttttta ttggtacaac ataattgttc ttaaattgcg      1320
     tgtgtttatg tttcctattc aacgtttctg atatagaggc atcccaatcg aatagtcgta      1380
     caatattgag ggttctcgcc aaacaaaata atgggttaca tatctgccat ataaatgcgc      1440
     aaagtttatg caaaaagatt gaagagttca ggtatttgtt tgttaagtcc aacatagatg      1500
     ttttgtgtgt ttctgaaacg tggtttgctc ctcaacttaa tgacgctatg gtagcatgtg      1560
     atggttacga tatgtacaga tccgatcgtg aggggcatgc cgggggtgtg gctatctaca      1620
     ttaatacaaa actaaawaca aaactaatat gcaagcagcc aacaggwagt gcagttgaat      1680
     acctattctt acaagtcaac gggagtcgaa gcgcttccaa tatgctgctc gggtgtgttt      1740
     accgaccgaa tcgaacagtw gactattctg attttgttga agtagtggct tcattatgtt      1800
     gtaaatataa caacgttgta ataaccgggg atttcaatag taatctgctt attgagcggc      1860
     atctaaactt agaaatggag agccttggac tgattcctgt gaactttact acacctacac      1920
     acttctccaa tactctcaac agtcttcttg atgttttctt tgtaaatgat cgtagtaaga      1980
     ctcttttata tgaccaagtc tcagtgccag ctttttcaaa gcatgactta atctatctga      2040
     catatgaatt tgaccctatt tttcttgacc acaccattaa ttacagagat tttaggagaa      2100
     ttgatcttga cttacttagc cagcatttag atgccctcga tcttaattat atgcatactt      2160
     taacagacgt aaatgcccaa ataggctttt tgacagaatg catagagtcg ttgtatgaga      2220
     gatttgtgcc ccttaaacaa aaaattatta aggccacggg aaatccttgg tttaataatg      2280
     ccatagcttt aaagataagc caaagagata gtgcttacag aagatggaaa agatacaaaa      2340
     ttcctgatta ctataaagaa tttaagtcat tacgaactgt agtaaccacc ttaatcgtta      2400
     atgcgaagcg tgcttactat tcacaaaaac ttcaaactgc catgtcgatg aagcagaaat      2460
     ggaaggagtt aaaaaatttg ggtgttggca agtccaaaag caaaagcaat ataactgcag      2520
     accccaatga actgaatata aaatttgtgc aatcaaacgt acctgaaact atgaccaacc      2580
     cttatcttga cattattgtg aataatatct gtgataatag ctttagtttt atgtgtgttt      2640
     cttcttgtga tgttttagat tcggttctta aagtaaagtc gaatgcggta gggcttgata      2700
     atatacaccc tagcttcata aaaataatcc tgccaaaaat cattgacaaa ataacttatg      2760
     tgttcaacac tgcatttacg actgcctgtt ttcctaatat ctggaaaatg gcaaaaatta      2820
     ttcccgtccc caaagccaat gatgaataca gaccgatatc tattctgcca tttctttcta      2880
     aggtctttga acaattaatg gcacaacaga ttaatttgtt cttaggccaa aattcattaa      2940
     tgtgcaataa ccaatctggt tttcgaaaat ttagaagctg tacaactgcg atattagata      3000
     taaccgagaa catcagacag aaactcgaca gtaaccagat tacattttta acattattgg      3060
     acttcagcaa agcatttgac acggttaacc acgaaattct atgtacaaaa cttttaaaat      3120
     tcttcaactt ctctggaccc gctgttaaac tcatatcatc atacttgagt ggcagaatgc      3180
     aagctgtttt tactgaaagt ggatattcag aaccactttt actaaagcgt ggcgtgcccc      3240
     aaggctctgt gttaggtcca cttttgtttt caatgtatgt gaacgattta ccaactgtat      3300
     tgtccaactg taatgtccac ttgtatgctg acgacgttca aatgtatgtt agctgtccta      3360
     taggaagaat attagactgt gtaaatttat gtaacgtgga attgtcaaat gttagtaagt      3420
     gggcaacaag caatggtctg tcgcttaatc cgtctaaatg taagtgtatc gttataagta      3480
     aaaaatcctc aagcatccgt aatcttccaa atttacgtat tgataattct ccgatcttct      3540
     atgtagaaca ggtggctaat cttggcatta caattaattc caatttgtca tggagtgcac      3600
     atgttgtcaa atccgtgggg aggtcatatg gccaactcag gcaactttat ctgtcgcaac      3660
     aatttttacc aacatccata agacttatga tagcaaaatc atacctccta ccaacattgt      3720
     gctacggaat agagattttc ggtcattgtg acagtgcctc gcaacacaag ctaaacattg      3780
     catttaataa catagctaga tacgtattta atattaaacg aggggaacac atcacgtcat      3840
     ttgccaatag catatacggc tttaatttta aatcctggag taatgccaga aatctcattc      3900
     ttttacataa aattataaaa actaaagaac ccagttattt gtatgaaaaa ttgaaatttg      3960
     gcacctcgac aagaacccga aatattatta atattaaaca taagctagca tcctcggatc      4020
     gccaattttt tattcacact attcgattgt ggaacgagtt gccacaacat cttaaaataa      4080
     ttgatagcac aacgcaattt agggacaaat tatttacatt tttaaaatcg caaagtacca      4140
     attaaaatta aatttataat aaaataacaa aactaactaa ttaaatttaa atttkcaaca      4200
     attatttaaa ccgtcaattc ttattgttaa ttgttaattg tattaaatgt tagatataag      4260
     tgcaaaactc taatataagt agagacctac atattctgta tttgcataat tcttaatatt      4320
     gtctatgtga cttgtgcact aaattataag gaaatccttg tagcactagg aaataagtaa      4380
     gaaataaatt aaattaaa                                                    4398
//
ID   Kiri-2_HMM  repbase;    DNA;    INV; 2950 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2950
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2805-2805 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           227..2596
FT                 /product="Kiri-2_HMM_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="ERLPYKSIKNIINSANLNILPTTATHFFPGCAPSLLD
FT                 LMIVSSTERVASFGQMSAEAFSYHDLVYLSYKIRPPKLKPTVVMRRCFSDI
FT                 DNEKXMNDLAXIDWDCIFSAGNINDKLNIFNSILTELFDIHAPLRPVKIKH
FT                 LPAPWLTSDIKXLMSKRNTAKSKYKKNPTDANXQRYKTLRNRCNKTCRDAR
FT                 RNFILSSIDNSNPAKTWKFLNAMGIGDRRXSDSATLNNCTDLDSLNKFFTS
FT                 VNVLADSTKARTLHSLSPXSNPATKPFLFSPISQAEVRKHVLSIKSDATGF
FT                 DNISRRMILLTLNSILPVLCHIYNFSLSHNEFPDAWRHAIVIPIPKVPNPA
FT                 SFSNYRPISILPFLSKVLERIVHEQIYLFLHNNNILSPFQSGFRPGHSTVT
FT                 ALNKVCDDIRCGFEHQQVTLLVLLDFSNAFNTVDFDVLLSILKSINFSSKA
FT                 TEWFSSYLHGRRQSIKLDGKASSICSINAGVPQGSVLSPLLFSIFINTLTQ
FT                 LISSSYHLYADDLQIYTTAAVNDIPNAVSEINSDLQIISSWSKSFGLSVNP
FT                 NKSQVCIFGSSKQLSKLRSPLPSIXYDNVCLEVSESVRNLGIRMDGXFCWS
FT                 PXVSELSRKVFCXIGRLRGWKNVLPXKTKISLAHALLLPILDYADXCYLDL
FT                 SQQLLNKLERLQNLIIRFIFGLRKHDHVSQYRSQLKWLPIEYRRNLHALTL
FT                 LYGILFNPVTPSYLKERFKFLGSDILHSQNLRSRHNHILEIPLCRTKCYSD
FT                 SFTVKTVKLWNELPLEVRRSQSIGLFKRRLKQYYLQLNL"
XX
SQ   Sequence 2950 BP; 807 A; 647 C; 483 G; 975 T; 38 other;
     cattttcctt tctcggtatt acacaagtca ccctctgtct tctcaaactc gtcggaacat        60
     atcttaatag aagtcctttt tggcactctc aaagttttac ttggtgtctt ttatagtccc       120
     aatctacata taaattactt tgatgctttt gaggatctat tagaaaggta tgctccgggg       180
     ctgatcactc catcataatg ggtgatttca acacgtgctt gattaagaac gacttccgta       240
     caaatcgatt aaaaatatta tcaacagtgc caacttaaat atccttccta cgaccgctac       300
     ccacttcttt cctggttgtg cgccatcttt gttagacctt atgatcgtat catcaacaga       360
     acgtgttgca agctttggtc agatgtcagc tgaagcattt tcgtaccacg acctcgtcta       420
     cctgtcatat aaaatacgtc caccaaaatt gaagccgaca gttgtgatgc gaagatgttt       480
     tagcgacatc gacaacgaaa agttmatgaa cgatcttgct kgtattgact gggactgcat       540
     atttagtgcc ggtaatatca atgacaaatt gaatattttt aattcwattt tgacagagct       600
     cttcgatatt cacgcaccgc tccggcctgt taaaatwaaa catctccccg ctccktggtt       660
     aacttcagat atcaagktgc ttatgtccaa acgtaatact gcaaagtcwa aatacaagaa       720
     aaatcctacg gacgcmaatm tgcaaaggta caaaacacta cggaaccgat gtaacaagac       780
     ttgcagagac gcacgwcgta attttattct ctcgtcwatt gacaatagca atcccgcaaa       840
     aacttggaaa ttcctgaacg cgatgggaat aggggaccgg cgcwccagtg actcggctac       900
     cttaaacaac tgtacggatt tggactcgct gaataaattt tttacctctg tcaatgtatt       960
     agctgatagt actaaagcaa gaacccttca ctccttgtca ccamaatcta atcctgcaac      1020
     aaaacctttc cttttctctc ctatttcaca agcggaggtt cgcaagcatg tgttgtcaat      1080
     taaatccgac gctactggct ttgataatat tagtcgacgc atgattcttc ttacacttaa      1140
     ctcaattctt cctgtcctgt gccatattta taacttttcc ctttcccata acgaattccc      1200
     tgatgcttgg cgtcatgcaa ttgtgatccc tattcctaaa gtacctaacc cagcatcttt      1260
     ctcaaactat cgtcctatat ccatactgcc tttcctatct aaggttcttg aacgcattgt      1320
     acacgaacaa atctatcttt tcctacacaa taataacata ctatctcctt tccaatctgg      1380
     tttccgtcct gggcacagca cagttacagc tctaaataaa gtctgcgacg atataagatg      1440
     cggttttgaa caccagcaag tgactttact tgttctgctg gatttctcta atgcatttaa      1500
     cacagttgac ttcgatgttc tattatctat tttaaaatct attaacttct cctcgaaagc      1560
     tactgaatgg ttttcctctt acctacacgg acgcagacaa agtatcaagc ttgatggaaa      1620
     agcttcatca atttgcagta taaacgctgg cgtcccacaa ggtagtgtac tatcaccatt      1680
     actcttttcc attttcatta acactctcac tcaactcata tcgtcatcgt accaccttta      1740
     cgctgatgac ttgcaaattt acacaactgc agctgtaaac gatataccaa atgcggttag      1800
     tgaaattaat tcagatttac aaattattag ttcctggagt aaatcgtttg ggctctctgt      1860
     caatcccaac aagtctcagg tgtgtatatt tggtagctct aaacaattgt ctaaattacg      1920
     ttctccttta ccctcaattt twtatgataa tgtttgcttg gaggttagtg agagtgttag      1980
     gaatctggga atcaggatgg acggtkcttt ttgctggtcg cctcasgtat cwgagcttag      2040
     tcgkaaggtc ttttgtwcca taggtagatt gagagggtgg aagaacgtct taccgwtaaa      2100
     gactaaaatc tctctkgccc acgctctcct tctacctatc ctagactatg cwgatwcgtg      2160
     ctacttagat ctgtcccagc aactactaaa taaactwgag cgtctgcaaa atcttataat      2220
     tmgatttatt tttgggttaa ggaaacatga ccatgtgtct cagtaccgwa gtcaactkaa      2280
     atggctgcca atagaataca ggcgtaactt gcatgccctc actctccttt atggcatcct      2340
     tttcaatcct gttacwccat cmtacctcaa ggagcgcttt aagtttctgg ggtccgatat      2400
     cctacattcc caaaacctcc gttcccgcca taaccatatc cttgaaattc ctttatgccg      2460
     caccaaatgc tatagtgact cttttactgt taaaacggta aaactatgga atgagctgcc      2520
     actggaagta agacggtccc agtcgattgg gctatttaaa cgacgcctta aacagtacta      2580
     tcttcaactt aatctttaaa aggacaatat tataagagta tgtatattta tctttaattg      2640
     tttatttatg tatttatata tatatgtatg tatttattta tgtatgaatg ttatgtttgt      2700
     ttatacatat gtatatataa agctatttgg tattcgctat ctgwgtattg gtttwtatat      2760
     atcktagtac tttttgcacc tttctgcctt ctttwctaaa tttaatcctt ccgtttttct      2820
     ttggttgcct gtaagaaatc gcttttagtg ataaggccgc cattgcactg ttaatcgtgt      2880
     ttmtmatgww ctgtattttw ttcccttctt atttgtgcaa taaagtgtta tattattatt      2940
     attattatta                                                             2950
//
ID   Kiri-2_LMi  repbase;    DNA;    INV; 3679 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3679
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3156-3156 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(722..1087,991..1185,1155..3236)
FT                 /product="Kiri-2_LMi_1p"
FT                 /translation="MFVEIKXFHRKCLICVIYNPPKVGQLSSFESALSSFA
FT                 PSYEHVVIAGDVNKFLTKESFCVKIHSHTFLLKPFIGSTWADHHTADTHTL
FT                 IDILATKSPNRVIHSDQISAPGLSFHDIILMSIHYPCNQVSKQSNPLRSDL
FT                 CTWIIFPRYYTHVYSLKCPKNTSQVTTFRDFKHMNMTSLQQMPMIFRGLAA
FT                 DAYDISWLIPTGNNRDVNIQVCEFTNKLTNLYDKHAPLKTRKVKRKPAPWL
FT                 TDDIKHLMSVRDAAHREYKRHPTSENQLAYKKQRNRVSQAVRNAKLRHAHS
FT                 LTKDLHRPAILWKKLRGLGIGKSKSATEPVVPIDDLNEYFTTPTFVIDQRT
FT                 KTQTINSLKMSGADTNQKFSLEPVSPNTVRKSILRIRSAAAGHDNINVHMI
FT                 SSVIDPLLPIITDIFNNSLTSSTFPTSWKHGLIKPLPKKESATQLSDYRPI
FT                 CILPSLSKALEYIVHEQITSYLTSHDLLDEYQSGFRQNRSTTTALIKVTDD
FT                 LKHAMDNQQATIMCFLDFSKAFDNVDFDILLAKLSNLNFSTGAIQWFHSYL
FT                 TTRKQCVITAKNRSKWRDVVSGVPQGSVLGPLLFSLYVNDVSTVLSHCKYH
FT                 LYADDLQLYLSESPKNLSTAIQHVNADLLSLSRWAHSMGLKLNPSKTQAIL
FT                 VAHKRLITPQLRETLPPLILNDTQIRFSHSAKNLGVIFDQHLDWTEHTTTV
FT                 CKKVYASLHSLQKYKKAFPLQLKKKLVETLILPILDYGDAILQGLSHENSH
FT                 RLELAMNSCIRYICNLRFYDHISPAYQQLSWLRADKRRSYHTLCLLHRFLN
FT                 HCKPSYLSSTIILLSEQHSRNTRSHQNKTLSVPSHNTAIFSKSFSVSGTRL
FT                 WNNLPQKLREIKSIQNFKRQLRVHLLSQ"
XX
SQ   Sequence 3679 BP; 1100 A; 907 C; 593 G; 1074 T; 5 other;
     tagcatagtc ataattagtt atactgttct gtttctctta tcttatcaga gtattatttt        60
     ttcagagtat tacttgatca gagtattatt taatttggag taagtacaat ctgttcctca       120
     tactactatt acattattat tttcagtaga atcactcttt ctactactgc ttctccaata       180
     attaacagtg cctactccat cccagtgttt tagcgctctc tggcgaatcc ccgcacctgc       240
     agcctgcact gtttgtgccg caggtgtgtc tgaccttgac cctccctccc tctttgtcgg       300
     ccaccctggc tgccgccgcc gcgctttctc ctccccctcc ccttcccttc cgcattccaa       360
     cgggcgcgcc acggcgcctc cctccgsgac agctgtgcct tccacgtcca gcctgttagc       420
     gaaaaccgca ggcgacwkct caacgctaca gattgctcat gcaaatgtcc agtccctatc       480
     agcgcacctg actgaattcc gctgcatatt ccaagacctc ggttttcacg ttatacttct       540
     atcagagaca tggctaaaac cgagcatacc ttctagctct gtagctcttc atgacgatta       600
     catttttctg agacatgaca gatgtaacaa acgaggcggc ggagtggcag catatattcg       660
     ggcaaacctg twtcctaaac tcgtccactc gtccaaaaac gaagaaaaac agcccgaata       720
     catgttcgta gaaattaags ctttccatag gaaatgtctg atctgtgtaa tatacaatcc       780
     acctaaggtt gggcaactct caagttttga atctgcactg tcaagttttg caccctcgta       840
     tgaacacgta gttattgctg gagatgtaaa taaatttctt acaaaagagt ccttctgcgt       900
     caaaattcac tcgcatactt tcctcctcaa acctttcatt ggttccacct gggccgacca       960
     ccatacagca gacactcata cactcattga tatccttgca accaagtctc caaacagagt      1020
     aatccactca gatcagatct ctgcacctgg attatctttc cacgatatta tactcatgtc      1080
     tattcactga agtgccctaa gaatacatcg caagtgacga cttttagaga ttttaagcat      1140
     atgaatatga ctagcttgca gcagatgcct atgatatttc gtggctgata ccaacaggaa      1200
     acaatcgcga tgttaatatt caagtatgtg agttcactaa taaattaacc aacttgtatg      1260
     acaaacatgc tccccttaaa acaagaaaag taaagagaaa gcctgcaccg tggcttacag      1320
     acgacatcaa acaccttatg agcgtcagag acgcagcaca cagggaatac aaacggcacc      1380
     cgacctctga aaatcaactc gcctacaaga aacaacgaaa ccgtgttagt caagcggtga      1440
     gaaatgcgaa actcaggcat gctcactcgt taaccaaaga ccttcacaga cctgccatcc      1500
     tatggaaaaa attacgaggt ctaggaattg gcaaatcaaa atctgctacc gaacctgtag      1560
     ttcctataga cgatcttaac gagtatttta ccacaccgac atttgtaatt gaccaacgca      1620
     caaagacgca aactattaat tcccttaaaa tgtcgggggc tgatacaaac caaaaatttt      1680
     ctctcgagcc ggtaagtcca aacacagtca ggaaatcgat tttgcgaatt cgttcagcag      1740
     ctgcagggca tgataatatt aatgtacaca tgattagtag tgtcatcgac ccgctactac      1800
     caattataac tgacatcttt aacaattctc tgacttccag taccttccca acatcatgga      1860
     agcatggtct tattaaacca ttaccaaaaa aggaatctgc cacacaactt tccgactaca      1920
     gacctatttg catcctacca tcattatcca aggccttgga atatatagtc catgagcaga      1980
     taactagcta tttaacatca cacgacctac tagacgaata tcaatctggt ttccgccaaa      2040
     atcgcagcac gacgactgct cttataaaag tgacagacga tctcaagcat gctatggata      2100
     accaacaggc gacaattatg tgttttttag attttagcaa agctttcgac aatgtcgatt      2160
     ttgacatttt acttgctaaa ctctctaatc taaatttctc tacaggtgct attcagtggt      2220
     tccactcata cctcaccacc cgtaaacagt gtgtaataac agcaaaaaat aggtcaaaat      2280
     ggagggatgt tgtatcaggg gttccacaag gatctgtact ggggccttta ctattctcac      2340
     tatatgttaa tgatgtgtcc actgttctgt cccactgtaa atatcatcta tacgctgatg      2400
     acctacaatt atatctcagt gaaagtccta aaaacctaag cacagccatc cagcatgtaa      2460
     acgcggactt actttcacta tcaagatggg cacatagcat gggcttgaaa ctgaatccat      2520
     caaaaacgca ggcaatctta gtggcccata aaagactcat cactccacag ctcagagaaa      2580
     ctcttccacc tttaatactt aacgacacac aaatacgctt ttctcattca gcaaagaact      2640
     taggagtaat atttgatcag cacttggact ggacagagca cacaacgaca gtctgtaaga      2700
     aggtatatgc gtcacttcat tcactgcaga aatacaaaaa agcatttcct ttacagctga      2760
     aaaagaagct cgttgagaca ctaatacttc ccattctaga ttatggtgat gctattctgc      2820
     aaggactgtc acacgaaaat tcacataggc tggagctggc gatgaattct tgtatccgat      2880
     acatttgtaa cttacgtttc tacgaccata tcagtcccgc ataccagcag ttatcttggc      2940
     tacgtgcaga taagcgtcga agctatcata cattatgttt gctgcatcgc tttctcaatc      3000
     attgcaaacc ttcttactta tcctcaacga ttatattact atctgaacag cacagcagaa      3060
     acacacgctc tcaccaaaat aaaactctct ctgtaccatc acataacact gcaatcttct      3120
     ctaaatcatt ttctgtatcg ggaacacgtc tgtggaacaa tcttcctcaa aagttaagag      3180
     agataaaatc aattcaaaac tttaaaagac agctaagggt tcaccttctg tcacaatagc      3240
     catctttttc tccacttacc agtctgtagc ccactgttgt caattcctcc tccccccaaa      3300
     tgtttccctt tcctttcgtc agcagagatc tctattcata tatatctcca cttcctcaca      3360
     tccattggca ctgtcatttt tcaatcttct cctctttcac taatcatttt cccccttctg      3420
     tttatattaa acttaattca aatgtgttaa acatctatct ccatgtaaat atctcttgtt      3480
     attattagta ttactttgat ttttgtgtta ttattatcat tattattatt agtattacca      3540
     tatattgtta ttattaatat tattaataca gtgttttttg ttattaaatc ctttgtttat      3600
     gttgttcctg gtcagatgta agagagggcc ctatggccct aatctggtca ggttaaataa      3660
     ccaaataaat aaataaaaa                                                   3679
//
ID   Kiri-2_PPo  repbase;    DNA;    INV; 139 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-139
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3117-3117 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. 5'-truncated.
XX
SQ   Sequence 139 BP; 42 A; 25 C; 22 G; 50 T; 0 other;
     ttgtctgctt ctcctgtccc actgggttgc ctgtaagaat tgctcatagc aataaggccg        60
     cccttgcaca atcttgtatt agctagttta aacatttgta tattaatttt tgtgcaaaag       120
     tttaaataaa taaataaaa                                                    139
//
ID   Kiri-30_AAe repbase;    DNA;    INV; 4723 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-30_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4723
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 725-725 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >94%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           249..1049
FT                 /product="Kiri-30_AAe_1p"
FT                 /translation="MSNENNKPLTRSTSTSSSSLNTDGRLSKQNKSDDVET
FT                 LSDLWNKIRRMFAESKSDIEGKIESCKTELEQKITGVEQQLSSLKMGCDVQ
FT                 IKDVSEAVSDVRHDLELTKRNVNRLTTTNELIISGVPYTSDENLTLIFQNI
FT                 SVALASTPSNVPNVYLKRLSKNPINIGSSPPILCQFALRGVRDEFYGRYLR
FT                 QRSLNLRHIGFNNDNRVYINENLTMNDREIRTQAIKLKHQGRIQQVFTRNG
FT                 VVYARMKNGDEAEPFYSLEQLFASVN"
FT   CDS           1762..4578
FT                 /product="Kiri-30_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MADNAVSNASATMLIPKAVFHAVLPEDKINVCHINVQ
FT                 SICARNFTKFNELKNNFINSKMDIVCMTETWLSDVITDPMIGIDGFSLLRN
FT                 DRNRHGGGICIYFKSNLTCRIVKMSTAIDQLSMTEFLLVEVRGGGEPFLLA
FT                 VYYNPPEIDCSDSLKEHLEEFTVKYNHTFFIGDFNTDLMKSNSKSLKFKET
FT                 LSALSYTCVNNEPTYFYSNGCSLLDLLITDSPDMIYNLNQVSMPFASKHDL
FT                 IFASINIMKTRTESVSYRDYKNFDANRLNNAFHSMDWNSMISITDPDMFLE
FT                 IFNSRLKFLHDECIPIRKSKPKVNPWFNQDIEKAIVDRDIAYSNWKRSRNE
FT                 LDMAHFKRLRNRVNLLIRDSKRFYDRERFNVNLPAKQLWANIKKLGISKPR
FT                 STDGNSSFSVDEINNYFTDNFTVDDTTSSANFSSIDGFNFRFVEDIEIINA
FT                 VHEIKSNATGLDDISIVFIKIMLPLILPFVKHLFNIIISNSKFPRAWKVVK
FT                 IIPIKKKKSKDDIHNLRPISILCALSKVWEKLLKIQISEFVTEMNFLHPLQ
FT                 SGFRQHHGTNTALLKVHDDISSVIDRKGVAILLLIDFAKAFDRVSHKKLLM
FT                 KLSDIFQFSTSANRLIHSYLTGRSQAVCCNNKLSSFKNIESGVPQGSVLGP
FT                 LLFSLFINDLPSCLRYCSVHLFADDVQIYLCEKNRNNYNDIGFKINHDLRN
FT                 LLLWSQNNLLPINPTKTKAMLICKNRNPITCPDLFMDGERIEFVSQVDNLG
FT                 VTFTSNLNWDVHINAQCGKIYGSLKRLNLTTRHFSIDTKIKLFKSLILPHF
FT                 LYGDFIFSNALASSIDKMRLALNACIRYVYKLPRFSRVSHLHKDLIGCNFS
FT                 NFYKFRACVTLFKLIRSRKPEYLFTKLNPMRSDRNRNYLIPQHQSAYYSQS
FT                 LFARGVVYWNQLPLSIKTNVSLFNFKRDLKQHLAE"
XX
SQ   Sequence 4723 BP; 1488 A; 841 C; 831 G; 1562 T; 1 other;
     cattctgtag ttgcagttga attggcgatt aaccaccgtg tctgattgag tttgaaccag        60
     attctaatgc ataaacgaat ctttagtgac agtgatccta taatcaattg aagtttttat       120
     cagttgaaca atttctgtag tgatacaaca aacattaaat acttcttcaa gwccattcga       180
     catattgaac cccttcagaa aaatttgttc gtttatcttg aatctgctga gcgtcgaaat       240
     cagacacaat gtcaaacgaa aacaacaaac cccttactcg ttccacatct acctcatcct       300
     catccttgaa tactgacggt agattgagca agcaaaacaa aagtgatgat gttgagactc       360
     taagcgatct atggaataaa atacggagaa tgttcgctga gtctaaatcc gatatcgaag       420
     gaaaaatcga gagctgtaaa acggagttgg agcagaaaat taccggagtg gagcagcagc       480
     tatcaagtct caagatgggt tgtgatgttc agatcaagga tgtttctgag gctgtaagtg       540
     atgttcggca tgacctggag ctaacaaaac ggaatgttaa tcgtctcaca acaaccaatg       600
     agcttattat ctctggtgtt ccatatacct ccgatgagaa tctaacgctc attttccaaa       660
     acatcagtgt tgccttggct tctactccat ccaacgtgcc taatgtttat ctgaagaggc       720
     tctccaaaaa tccgattaat attggatcat caccaccaat actttgccag tttgcgttac       780
     gtggtgtgcg agacgagttc tatggacgat accttcggca aagatcatta aatctgcgtc       840
     acattggttt caacaacgac aaccgtgtgt atatcaacga aaacttgacc atgaatgaca       900
     gagaaattcg aacgcaagcg atcaaactaa aacaccaggg tcggatacaa caagtcttca       960
     caaggaatgg tgttgtctat gctcgaatga agaatggaga tgaagcggag ccgttttact      1020
     cattggaaca actttttgca tctgtaaact gacctttcct aagtattact cttttccttc      1080
     cattgaatcc ttgtattctt tcctgaatta tccgtgtttc cgagcctctc ctaaaagcta      1140
     attaaagttt aaaaaaaacc tttccctgtt atagaccgtt tttccttcca agacattcca      1200
     tgattccgtt cctaagaaat ccatgtattc ttcagtccta aaagttataa tcagccacat      1260
     atttgtggtt ttgccctgat gaattcgaga ttgatcttgc cttcaacaat gtcgaatgat      1320
     attgtttggg taagcctgct tactggatgc tttcggcgac tttgatgagt gccacatgtt      1380
     gccgttgttg ctgctgctgc tgctgctgtt gaggctttcc atggtgattc tgatgctgct      1440
     gatgttgatg ctgtttctga ctgcacctgt ttttataacc aatgatgtta ccgttactag      1500
     aaagtttttc tccatcgttt aatactttac cagaattgtt acattattga ataccatcaa      1560
     cttttacttt aatattgcac tccgttgttt tggtagctag tcaattcaat tgcaactaga      1620
     aaaagcttaa gctcatgttc agaaagttag aatataatat tagtcgtaag ttggctttcc      1680
     ttatctttca tgctgacttg ttcctgccaa ttctgtttaa aaggtttctt ttaggtttaa      1740
     ctttattgtt tatatttgac tatggctgat aatgcagtta gcaacgcctc tgcgaccatg      1800
     ctaattccaa aagcagtttt tcatgctgtt ttgcctgaag ataaaataaa cgtttgtcat      1860
     attaatgttc aaagtatttg cgcacgtaat tttacaaaat tcaatgaatt gaaaaacaat      1920
     tttatcaata gcaaaatgga tattgtttgt atgactgaaa cttggctcag cgatgttatt      1980
     actgacccta tgattggtat tgacggtttc agcttgcttc gaaatgaccg taataggcat      2040
     ggaggtggaa tttgtattta ttttaaatct aatcttactt gtagaattgt gaaaatgtct      2100
     acagctattg atcaactgag tatgaccgag tttttactag ttgaagttcg tggtggcggt      2160
     gaaccatttt tattggccgt atattacaat cccccagaga ttgactgttc ggatagttta      2220
     aaagagcatt tagaagagtt tactgttaaa tacaatcaca ctttctttat tggtgacttc      2280
     aatacggacc tcatgaagtc aaattcaaaa tcactgaaat ttaaagaaac tctatctgca      2340
     ttgtcttata catgcgttaa taatgaacca acctactttt attcaaacgg ttgttcacta      2400
     ctagacctcc tgattactga ttctcctgat atgatttata atttaaacca agtttctatg      2460
     ccatttgcat caaaacatga tttgatattt gcctctataa acatcatgaa aacaagaact      2520
     gaatcagtta gctatagaga ctacaaaaat tttgatgcta atcgattgaa taatgctttc      2580
     catagtatgg attggaactc aatgataagt ataactgatc ctgatatgtt tctagaaatt      2640
     tttaacagcc gtttgaagtt tttgcacgat gaatgtatac ctattagaaa aagtaagcca      2700
     aaggttaacc catggttcaa ccaagacatt gaaaaggcga ttgttgatcg cgatattgca      2760
     tattccaatt ggaaacgaag ccgtaatgaa ttggatatgg cacactttaa acgacttagg      2820
     aatagagtga atttacttat aagagattct aagcgttttt atgatcgtga aagatttaat      2880
     gttaacttac ctgcaaaaca attgtgggcg aacattaaga aattaggtat ttccaagcct      2940
     cggtccacgg atggtaattc aagttttagt gttgatgaaa taaacaatta tttcactgat      3000
     aactttaccg tcgatgatac tactagttct gctaacttca gcagcataga tgggttcaat      3060
     ttccgtttcg ttgaagatat tgaaataata aatgctgtcc atgagataaa atccaatgct      3120
     actggattag acgacatttc gatagtattc attaaaatta tgttacctct aatcttacca      3180
     tttgttaaac atttgttcaa cattatcata tcaaattcca agttcccacg tgcttggaaa      3240
     gttgttaaaa taataccgat taagaaaaag aagagtaaag atgatataca taatcttcgt      3300
     ccaataagca ttctgtgtgc cctttcgaag gtttgggaga aacttcttaa aatccaaata      3360
     tcagaattcg ttaccgaaat gaattttttg catcctctgc aatcgggatt tcgtcaacat      3420
     catgggacaa acacagctct cttaaaagtt catgatgata tttcaagtgt aattgacaga      3480
     aaaggagttg caattttact gttaatcgac tttgcgaaag cttttgatcg tgtatcccat      3540
     aaaaagttgc taatgaagtt aagcgatatt tttcagtttt caaccagtgc caaccgttta      3600
     attcactcat atttaactgg tcgttctcaa gccgtgtgct gcaacaataa attatcgagt      3660
     tttaagaata ttgaatctgg tgttccgcaa gggtcagttt tgggtccctt attattttct      3720
     ttattcatca atgacctgcc ttcgtgtttg agatactgtt cggttcacct ctttgctgat      3780
     gatgttcaga tttatttgtg tgaaaaaaat agaaataact ataatgacat tggctttaaa      3840
     atcaatcatg atcttcgaaa tcttcttttg tggtcgcaaa ataatttatt acctataaac      3900
     ccaactaaaa caaaggcaat gttgatatgc aagaatagaa acccaattac atgtcctgat      3960
     ttgttcatgg atggtgaaag aattgaattc gttagtcaag ttgataattt aggagtaact      4020
     tttacgtcca atttgaattg ggacgtccat attaatgcac aatgcggtaa gatttatggc      4080
     tccttaaaga gattaaattt gacaacacga cattttagta ttgacaccaa aataaaactt      4140
     tttaaatctc taattttacc acattttctt tacggtgatt tcattttttc gaatgcgtta      4200
     gcttcttcaa tcgataaaat gaggttagct ttgaatgctt gtataagata tgtgtataaa      4260
     ttacctaggt tttccagagt gtctcatcta cacaaagatc taataggctg taacttttca      4320
     aatttctaca agtttagagc ttgtgtcacc ttattcaaac taatacggtc tagaaagcct      4380
     gaatatttgt ttactaaatt gaacccaatg cgaagcgata gaaatcgtaa ctatcttatc      4440
     ccacagcatc aatctgctta ttacagccaa tcactgttcg cacgaggcgt tgtgtactgg      4500
     aaccagttac cactcagtat taaaactaat gtttcattgt ttaactttaa aagggacctt      4560
     aaacagcatt tggcagagta ggatgcaaaa agattaggaa atgcaaaaga acatgaaatc      4620
     aatatatata tatatcatca taataaacct tgtatagcgg taaaaaaagg ctttcagcct      4680
     tatgttatac gaatctacat aataaataaa taaataaata aat                        4723
//
ID   Kiri-31_AAe repbase;    DNA;    INV; 4508 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-31_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4508
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 726-726 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           292..1062
FT                 /product="Kiri-31_AAe_1p"
FT                 /translation="MSDNERTLRSNNTTKGSSLSNDMSVGDLANLMKSQFI
FT                 SYQRSTKEEIKIMGEKLSSEIEGLKREITTDMDKLREENNKIYAELTSTIS
FT                 TLEMDTTHAMETSMRANDLIASGIPFVQGEDLMSYFKVWCCSLGYSEGHIP
FT                 MVDVRRLIGRSGSSGNAPNILIQFAITVQRNDFYSRYLRSRRLVLSDIGFS
FT                 VNKRVYVNENLGPAARNLRSKAIRLKKEGRLHAVFTRNGAVYIKRNEEDRG
FT                 VAVKSSDELDHLLQSS"
FT   CDS           1528..4347
FT                 /product="Kiri-31_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDNDTSVNTSSNWSIPGVVMKSALLPGKLSICCLNSQ
FT                 SICARRMTKFIELKQMIIMTAVDIVCVCETWLNSRTDNNVLTIDGYDLIRN
FT                 DRIGRLGGGVLMYVKHGLNHKILDLSENISSTEYILCEMKLHNKKMLFGVF
FT                 YNPPNVECSETLNDLLCRYGTEYSGVYFLGDFNTNLLDVHSSRTARLQEVL
FT                 IGHSTECLGVEPTFFHINGCSQLDLFLTNVPDNVLRFNQIDFPVLSNHDMI
FT                 FASLDIEVYTGVPSSFQYRDYNRVDIGALRESLQLVDWDTFYSIDDSDILT
FT                 EYFNAVICEMHEIFVPVRTVLRNLKSNPWFNNSIAKAIVDRDLSFKQWKVS
FT                 SNAIDHALFRRLRNKVNYLIRKAKTEYYSSQINTNLPPKLLWKRLKNSGIN
FT                 TTTKSCNNFDANDINNFFCETFGDNDRSFRPIHRNSELPAFNFRNIDEVQV
FT                 INALFDIKSEAVGLDNLSLKFLKMCLPSILPQIVYMFNTIICSSRFPKCWK
FT                 QAKVIPIKKKPLLNSIQNLRPISILCVLSKAFEALLKKQVCEHVEEYNLLT
FT                 RFQSGYRSKHSTKTAMMKVLDDIGIVLDNGKPVVLVLLDFSKAFDTICHTK
FT                 LCTKLQTNFGFSFEATQLVYSYLTERFQCVYNNGFFSTFIPTTSGVPQGSI
FT                 LGPIFFALYINDLPNVLKFCKIHIYADDVQLYFDCSEFDANTTSRYINEDL
FT                 ARILDWSVRNKLSINVEKTHAMFLTTRANSENAPMLCLNGSSLRYVEKALS
FT                 LGFTIKNDFSWDDFILQQCGKIYGKLRTLQLTGYFFSAEIKLKLFKTFIFP
FT                 FFVACDFLLPQASVNATNKLRVALNACVRYVYNLSRFDHVSHLQCKLIGCS
FT                 FENFVKLRSCLIIHDIFTQKEPDYLHSKLVLNRSGRSNKFILPRHRTSKYG
FT                 NSFFVRGVAYWNLLPNELTMQLSGMGFRRKCFEHFR"
XX
SQ   Sequence 4508 BP; 1370 A; 780 C; 855 G; 1503 T; 0 other;
     gttcatacgg tagaatgaag tgcacgtaaa agtggttggt gctcacaatt tgcgaatatc        60
     catggtaaaa caccagttaa aaaccgaaaa gctactgttg ccaaacaagt gatcatctat       120
     caaacgattt ctatccgcca attaagtgat aagcttcaga ttagagttgt tttttgatac       180
     tcttttctag aacaagttct ataatatatc tgcagtagcc aaagccataa ttttcgagca       240
     gttattgttc tattccatcc cgtttgatcc attcggattg tactcgtcaa tatgagtgat       300
     aacgagagaa cgctgcgtag taacaatacc accaaaggat ccagtctcag taacgatatg       360
     agcgtcggcg atctggctaa tctgatgaaa tcgcagttca tctcgtatca acgttcaacg       420
     aaagaggaaa tcaagataat gggagagaaa ttgtcctcgg aaattgaagg cctcaaacga       480
     gagatcacta cggacatgga caaattgcga gaggagaaca ataagatcta cgctgagttg       540
     acttcgacca tcagtacgct agaaatggac accactcatg ccatggaaac atcgatgaga       600
     gcaaacgatt tgattgctag tggaataccg tttgtgcaag gagaggatct gatgtcttat       660
     ttcaaggttt ggtgttgctc tcttggatac agcgaaggtc atataccaat ggtcgatgtt       720
     cgtcgtttaa ttggaagatc tggtagtagt ggtaacgcac caaatattct gatccagttc       780
     gctattacgg ttcagagaaa cgatttttac tcacgttatt tacgttcccg acgtctagtt       840
     ctctctgata tcgggttctc cgtaaacaaa cgagtttatg tgaatgaaaa tctcggacct       900
     gctgctagaa acttacgatc gaaagctata cgactaaaaa aggaaggccg actacatgct       960
     gtattcacca gaaatggagc tgtgtacatc aaacggaatg aggaggatcg tggagttgct      1020
     gttaagtcct ctgatgaatt ggaccatctc ttacaatctt cgtaacccta ttcctttgac      1080
     aatctcatga atacttccca tgtttccaat ccaaaaggtt ttcctttgaa tcctacctga      1140
     aagtctctta catattacct tctcctttga agtttttgtt tacttccttc cgatccgttc      1200
     ctttaaaatt atcctttggc tcccctccta aaagctaaaa tcttctgttg ctgtatattc      1260
     atcactttgc tgctgctgtt gttgctggga tgtcgcctat cggatgctgt tgatgctggg      1320
     atgtggaatg ctgttgtttt aatgtccgcg ctgctttatc attcaaataa actctaataa      1380
     aattttacgc atcttgtgac acttttgata ataatgaatt gtagtaaatg atttgtatta      1440
     atgacttgaa cattttttgt attgtaaatg tagtatgggt gctcaaacta atttccgttt      1500
     caatctcgtc tgccttattt attgataatg gataacgata cctcggtcaa cacctcttcg      1560
     aattggagta ttccgggtgt ggttatgaaa tctgcgttgt taccaggaaa attatcaata      1620
     tgttgtttaa acagccaaag tatatgtgct cgtcgtatga ctaaatttat tgagctgaaa      1680
     caaatgatca ttatgactgc tgtagacatt gtttgcgtgt gtgaaacatg gttgaatagc      1740
     cggactgata ataacgttct tacgattgat ggctatgatt tgataagaaa cgacagaata      1800
     ggtagacttg gcggaggtgt tctaatgtac gttaagcatg gtcttaatca caaaattctt      1860
     gatttgtcag aaaatatttc ttccacagaa tacattcttt gtgagatgaa attacataac      1920
     aaaaaaatgc ttttcggagt cttctataac cccccaaatg tcgaatgctc tgaaacgttg      1980
     aacgatttgc tttgccggta tggaactgaa tacagtggag tgtattttct aggagatttc      2040
     aatactaatc tccttgacgt acactctagt aggactgcta gattacaaga agtgttgatc      2100
     ggccatagta ctgaatgttt gggagtcgaa ccgacttttt tccatatcaa cggctgttcg      2160
     cagctagatt tattcctaac aaatgttcct gataatgttt tacgattcaa ccaaatagac      2220
     tttcctgtgc tctctaatca tgacatgata tttgcttctt tagacataga ggtatatacc      2280
     ggggttccga gttctttcca gtatcgtgac tataaccgtg tcgatatagg tgctttgcga      2340
     gagtcactgc agttggttga ttgggacact ttttacagta tcgacgattc tgatatactt      2400
     actgaatatt tcaatgctgt gatctgcgag atgcatgaaa tttttgtgcc tgtacgtact      2460
     gttttaagaa atctaaaatc gaatccatgg tttaataata gcatagcaaa agcgatagtt      2520
     gatcgcgatt tatcttttaa acaatggaag gtctcatcaa acgcaattga tcatgctctg      2580
     tttagaagat tacgaaacaa agttaattat ctaattagaa aagcaaaaac tgaatattat      2640
     agttctcaaa ttaatacgaa cttaccccca aaacttctct ggaagagatt gaaaaattct      2700
     ggaatcaata caactactaa atcctgtaac aattttgatg caaatgatat aaataacttt      2760
     ttttgtgaaa ccttcggcga taatgatcgt tctttcaggc ctatccatag aaactcagaa      2820
     ctacctgctt ttaatttccg taatatcgat gaagtccaag ttatcaatgc tctatttgat      2880
     atcaaatctg aagctgtggg tcttgataat ttatcgctaa aatttttaaa aatgtgctta      2940
     ccaagtattt taccacagat agtttatatg ttcaatacaa tcatatgtag cagccgtttt      3000
     cccaagtgct ggaagcaagc aaaggttatt cctatcaaaa agaaaccctt gttaaattca      3060
     attcaaaacc tgcgacccat aagtattttg tgcgtcttgt ctaaagcttt cgaagctttg      3120
     cttaaaaagc aagtttgtga gcatgttgaa gaatataatc ttttgactcg ttttcagtca      3180
     ggttatcggt ctaaacacag tacgaaaact gccatgatga aggttttaga tgacattgga      3240
     atagtgttgg ataatggaaa accagtagtt ttagttttat tagatttctc gaaagcgttt      3300
     gatacgatct gccatactaa actgtgtact aagctgcaaa ctaattttgg tttttctttt      3360
     gaagctacgc aattggttta ttcctatctt acagaacgct ttcagtgtgt atacaataat      3420
     ggattttttt ctacgtttat cccaactaca tctggagttc ctcagggatc tatacttggg      3480
     cctattttct ttgcattata cattaatgat ttaccaaacg tgttgaaatt ttgtaaaatt      3540
     catatatacg ctgatgatgt ccaactctat tttgattgtt cggaatttga cgctaacacc      3600
     acttcgaggt acattaatga agatttggca aggatattgg attggtctgt tagaaacaaa      3660
     ctttcaataa acgttgaaaa gacgcatgca atgtttttaa ctactcgtgc caacagtgaa      3720
     aacgctccta tgttatgttt aaatggaagt tctttaaggt acgttgagaa agctttgagc      3780
     cttggtttta cgattaagaa tgattttagt tgggatgact tcattcttca acaatgtgga      3840
     aaaatttatg gtaaattgag gacactacag cttaccggat attttttcag tgctgaaata      3900
     aagttaaaat tattcaaaac ctttattttt cccttttttg tcgcctgtga ttttcttttg      3960
     ccgcaagcat cagtgaacgc tacaaataaa ctgcgtgtag ctcttaatgc ctgcgtgaga      4020
     tatgtttata atcttagccg gtttgatcat gtttcacatt tgcagtgtaa attaataggt      4080
     tgttcttttg aaaattttgt gaaacttaga tcttgtctaa ttattcatga tatttttaca      4140
     caaaaagaac ctgattactt acatagtaaa ttagttttga atagaagtgg aagaagtaat      4200
     aaattcatac taccacggca ccgtacgtca aagtatggta attccttttt cgttaggggt      4260
     gttgcatatt ggaacttgtt gccaaacgaa ttaactatgc aattatcagg gatgggattt      4320
     agacggaaat gttttgagca ctttagataa atagtagttt atttaaacac gtatattaga      4380
     atttttcaga aatgcgtgct ttaccgaatg tgtcactttt gttctacaat gcatcaatgt      4440
     aacatagaaa agacaaatcg tcttaagtta cttattaaaa taaataaatg aaatgaaatg      4500
     aaatgaaa                                                               4508
//
ID   Kiri-32_AAe repbase;    DNA;    INV; 4318 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-32_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4318
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 727-727 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1034
FT                 /product="Kiri-32_AAe_1p"
FT                 /translation="MADDRRTLRGQSTTKLPGSAADDMSVSDLAKLMKSQF
FT                 ATYQQSTNEEIRRLEHSFQSEMNKLRSDITSELENMRKESLKTTTDILNTV
FT                 KTNKTECLAAVDRSMRANDLIVSGVPFVVGESLPDHFIKWCQSLGYTDETI
FT                 PLVDIKRLARGSPSSGTVYLILVQFAITIQRNEFYARYLRSRKLSLTDIGF
FT                 SSNQRIFVNENLEPAARELRSKALQMKKRGKLAGVYTRMGIVYVKKTANDQ
FT                 EKPILSENDLXALL"
FT   CDS           1313..4156
FT                 /product="Kiri-32_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASGSTRDTSLNWCLPGTVMKSALIANKLSICSLNSQ
FT                 SICARKLCKLDELRQIAQSSAIDVICVTETWLNNKTDDSLLAIDGYNIIRN
FT                 DREGRLGGGILIYIKQGIHYRLLDKSIRRSGVSYCEYAAVEIVLKSEKLFL
FT                 VAMYNPPELNCVDTIDYLLSNYGTNYENLFFAGDFNTNLLNHNLTRTSQLM
FT                 ALLSVHNMFSLGSEPTFFHNNGYSQLDLMLFNSKARVLRFNQIDVPNFSNH
FT                 DMIFASLDFDIVHTPKKIEYRNYNAIDVNGLLDEFNSLDWHSYYRINDPNS
FT                 LLDFFNSNILELHNKYVPVRSLFLKNQQTVWFNDIISKAIVDRDLAYKRWK
FT                 ISKSSSDLKAFKTLRNKVTLKVRQTKGAYYERNLDTKLPSKELWKRLKNIG
FT                 VGKGTKSSENEFESNXINANFANNFSKSNCILDTNNATTSVTIRNQFYFDQ
FT                 INEIDVINALYHMKSNATGLDNLPIKFLKSINPLIVRPVTHLFNSIVTTSV
FT                 FPDEWKKTKILPLKKKTHLNSLQNLRPISILSALSKVFERIIKNQVCHYIN
FT                 QKNLLIKQQSGYREKHSTKTAMLKVFDDIGLVLDKGRPVVLLLLDFSKAFD
FT                 SISHNVLCQKLTTRFGFSTHAKNLIKSYLSGRTQTVLNNGIFSNYLPISSG
FT                 VPQGSILGPILFSLYINDLPEVLKHCKIHIFADDVQLYFGCMENTAIAISK
FT                 KINEDLSNIHAWSIRNKLLLNADKTCALFLSHSQSNNILKPTLKLNNTVIA
FT                 YLEEGVSLGITIQPNFKFDKFIYKQCGKIYASLRTLYAVSSFLSTDIKLKL
FT                 FKSLVLPHFIACDFLLTESSMYAESRLQVALNACVRFVFSLNKYDRVSHLQ
FT                 YHLIGCPFNKFSQLRCCLFLFKLARTKAPEYLYTKLKPLRSSRARKYAIPR
FT                 HNTSLYGNSFFIRGISFWNCLPNDITLENSISAFKRRCTEHFNN"
XX
SQ   Sequence 4318 BP; 1366 A; 816 C; 782 G; 1350 T; 4 other;
     tcgtgacaga aatggtgtac acgtaaaagt atagtgcaga cgcttatctt cgaaaccacg        60
     gttattccca cgtataaatc ggttttcact gtgttccgta aattagagat atagttactg       120
     cattttactg tgaagtttgt caagttgctg atcagtttac tgccgaaatt gagaaaacaa       180
     atttgtgatt tctacaatat ttcgtgggaa gccataacgc aaacagcatc caaagtttcc       240
     gttaaacggg cggctggtat cgagcaatca tggcagacga tcgtcgtact cttcgaggtc       300
     aatctacgac caaacttcct ggctccgctg ccgatgatat gagtgtgtct gatctggcta       360
     aattgatgaa atcgcagttt gctacctatc aacaatctac taatgaagag attcgacgat       420
     tggaacactc atttcaatcc gaaatgaaca aactgcgttc ggacatcact tcggaacttg       480
     agaacatgcg caaggaatcc ctgaaaacca caactgatat actgaacacc gtcaaaacga       540
     ataaaactga gtgcctagct gccgtcgacc gaagcatgcg tgctaacgat ctcatcgtaa       600
     gcggtgtacc gttcgtagta ggagagagtc tgccagatca ttttatcaag tggtgtcaat       660
     ctctgggata tacagatgaa acgattccac tggtcgatat caaaaggctc gcaagaggtt       720
     caccttcaag cggaacagtt tacctaatac tagttcagtt tgcaatcacc atacaacgaa       780
     acgaatttta tgcccgttat ctacgctcaa gaaagctttc gctcacggac atcgggttct       840
     catctaatca gcgtatattt gtgaacgaga atttggaacc agcggcgagg gagcttcgtt       900
     caaaagcctt gcaaatgaaa aagagaggaa aactagctgg agtctatacg aggatgggga       960
     ttgtttacgt caagaaaaca gccaacgacc aagagaagcc tatactatcg gagaatgatc      1020
     tacamgctct actgtgaacc atcttcccgt gtctcccctc ctaaaagtta aaccactttg      1080
     ttgctgctgc tgttgttgct gttggggttg ctggatgcca tttggatgct gctgcagtag      1140
     atgctggatt gatgctatca ttcatcgagt gtggtttgtt aaacttatta atatacgcgt      1200
     cgaataatta tgaatatgtt tgaatttttc tatgtaattt tgttagtttt tagtcaattg      1260
     cgtgtgctct ttacagattt cctcttaatt gctttgttct tatcttatcc ttatggctag      1320
     tggttctact agagatacct ctttgaattg gtgtttgcca ggaaccgtca tgaaaagtgc      1380
     ccttattgcc aataaacttt caatttgtag ccttaatagt cagagcatct gtgctcgcaa      1440
     gttatgcaaa ctagacgaat tacgacaaat agcccaatca agtgctattg atgtaatatg      1500
     tgtgactgag acctggttga ataacaaaac cgacgattca ctactggcga ttgatggtta      1560
     taacatcatt aggaatgata gagaaggaag gctagggggt ggcatcttga tatacataaa      1620
     gcaaggaatt cattaccgat tgttggacaa atccatccgt cgttcaggtg tgtcgtattg      1680
     tgaatacgct gccgtagaaa ttgtccttaa aagtgaaaag ttatttctcg ttgckatgta      1740
     caatccacca gagctcaatt gtgttgatac cattgattat ttgttgtcaa attatggcac      1800
     aaattatgaa aacttatttt ttgcaggtga tttcaataca aatttgttga atcataattt      1860
     gaccagaact tcacaattaa tggcgttgct gagcgtccac aatatgttca gtttaggctc      1920
     cgaacctact ttttttcata ataacggata ttcgcagttg gaccttatgt tattcaattc      1980
     aaaggcacga gttcttaggt ttaaccaaat agatgttcca aatttttcca atcacgatat      2040
     gatttttgca tcacttgatt ttgacattgt tcacactcct aaaaaaattg aatatcgtaa      2100
     ctataatgcc atcgatgtca atggtctttt agatgaattc aactccttag actggcatag      2160
     ttattatcgt ataaatgatc caaattccct gcttgatttt tttaattcca acattcttga      2220
     attgcataat aagtacgttc ctgtacgttc attgtttctg aaaaatcaac aaactgtttg      2280
     gtttaacgac attataagca aagccattgt agatcgcgat ttggcttata agcggtggaa      2340
     aatctctaaa agctcatctg atctgaaagc atttaaaact ctccgtaaca aggtgacatt      2400
     gaaagttcgc cagacaaaag gagcatacta tgaaagaaat ttagatacga aacttccctc      2460
     taaagagtta tggaaaagat tgaaaaacat cggtgttggt aagggaacta agagttcaga      2520
     aaatgaattt gaatccaatg wgattaatgc aaattttgct aataatttct ctaagagtaa      2580
     ttgtattttg gatacaaata atgctactac cagcgtgacc atcagaaacc aattctattt      2640
     cgaccaaata aatgaaattg atgtaatcaa tgctctttat catatgaaat caaatgccac      2700
     tggattggat aatctaccca taaaattttt gaaatcaatc aatccactta tagttagacc      2760
     tgttacacat ttattcaatt ccattgttac aaccagcgtt tttcccgatg aatggaaaaa      2820
     aactaaaatc ttacccttga agaaaaaaac tcatctcaat agcttgcaga acctacgtcc      2880
     cataagcatt ctttcagcgt tgtcgaaagt ttttgaacgc ataattaaga atcaagtctg      2940
     ccattatatc aaccagaaga atttgctaat taaacagcaa tccgggtatc gggaaaaaca      3000
     tagcacgaaa accgctatgt tgaaggtttt tgatgacata ggattagttt tggataaagg      3060
     aagaccagtt gttcttctgc tcttagattt ttcgaaagct ttcgattcca tttctcataa      3120
     tgtattatgt caaaaactca caactagatt tggattttct actcacgcta agaatctcat      3180
     caaatcatat ctgagtggcc gaactcaaac ggtcctgaac aatggaatat tttccaatta      3240
     tcttccaata tcatcgggcg taccacaagg ctccattcta gggccaattc tattttctct      3300
     ctacatcaac gatctgccag aagtcttaaa acactgtaag atacatattt ttgcggatga      3360
     tgttcagctt tacttcgggt gtatggaaaa tactgccata gctatctcca agaaaatcaa      3420
     tgaagatttg tccaatatac atgcatggtc tattagaaac aagcttttgc tgaatgccga      3480
     taaaacttgt gctttattcc taagccattc tcaatctaat aatatactga aaccaactct      3540
     gaagctgaac aatactgtca ttgcgtattt ggaagaaggc gtaagcttgg gtattacgat      3600
     tcaaccaaat ttcaaatttg ataaatttat ttacaaacaa tgtgggaaaa tatatgcgag      3660
     tttacgaact ctatatgcag tttcctcttt cttaagtacg gacattaaac tcaaactctt      3720
     caaaagttta gttctacctc atttcattgc ctgtgatttc cttttaaccg aatcgtcaat      3780
     gtatgctgaa tcaaggttgc aagtagcttt gaatgcttgt gtaagatttg tgttcagttt      3840
     gaataaatat gatcgagttt cccatcttca atatcatttg ataggctgtc catttaataa      3900
     attctctcag ctaagatgtt gcctattctt attcaaactt gcgagaacaa aagctcctga      3960
     atatctttat acaaaactaa agcccttacg tagttcccgt gcaagaaaat acgctatccc      4020
     acgtcacaac acgtccctat acggcaactc ctttttcata agaggtattt ctttctggaa      4080
     ttgtttaccg aacgatataa ccctagaaaa ctcaatttca gcttttaaga ggagatgtac      4140
     agagcacttt aacaattaaa ttagatttaa gcgatgaatt attgaattgt aatcgaatta      4200
     gttttgatat gttgatgcac ctttctgtgc ccctttctwc aaaaggtaac aattcaaaga      4260
     gacaatagtc ttatgttact taatgagaat aaataaataa aataaataaa ataaaaaa        4318
//
ID   Kiri-33_AAe repbase;    DNA;    INV; 4488 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-33_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4488
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 728-728 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..1025
FT                 /product="Kiri-33_AAe_1p"
FT                 /translation="MSVNKHQQNNDSDSKTMNADVLWKGIHRMISSATAKL
FT                 EAMIESYVSNLEACIVCVERRIESIKDEYNNNLDNLTKEINSIRTDHQLKL
FT                 QHLSRMERALDLVFTGVPYHPDEDLNQIYRRIACVIGAPDEHSIVHLKRLY
FT                 KHPVQSGSSPPILCRFAFRGIRDVFFNKYLHGRSLALHHIGFEGKGRIYVN
FT                 ENLTPLSRRILNAAIRHRNEGRLHKVSTKNGLVAVITHKECDVIVVDTLDR
FT                 WLLLESTLS"
FT   CDS           1505..4333
FT                 /product="Kiri-33_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLNNVNSDDASTSNLIPRAVLRSALDSDLFNICHINV
FT                 QSLTARRFSKFNELKMNLFDCNLDTICMTETWLDDSIENRMIAVDGYKIYR
FT                 NDRTRHGGGICVYVRKNLVCRVLEASSIVGNDARITEFMCFEVMSGKDRIM
FT                 LAVYYNPPDVDCSNTLMQHFDQFTVKYKSTFFIGDFNTDLLKNNSRQRRFR
FT                 DAISGMSYVCVNNEPTYFHNTGCSMLDLFLTDSLDKVCKHDQISLPGISHH
FT                 DMIFVSLKIEAPNVNVNASYRDYAHFDANALQNAFNAINWNEYFSQDDPDL
FT                 LLQFLNEKLLMMHDSYIPLRMIRPKKNQWFTSDIERAIISRNIAYKNWLRN
FT                 KTSVNSLQYKQIRNRVTNMIRNAKSNYEKRVLNINMPSKQLWSNIKRLGVS
FT                 KDNSSGIDCNASPDDINRYFSSNFSSDSYPNHSFPANSNGFVFREVNDFEI
FT                 VNAIFDIKSNAIGLDNIPIQFIKIVLPLAIIHFKHLFNRIILTGKYPTVWK
FT                 QVKVIPIKKKSKSTDITNLRPISLLCSLSKVFEKILKIQISEYIDHMNFLD
FT                 PHQSGFRKKHSTTTALLKVHDDIAQAIDKKGIAILLLIDFAKAFDRVSHHK
FT                 LLNKLSSKFLFSNTAVSLIKSYLCDRNQAVFHNMIYSSFVDIKSGVPQGSI
FT                 LGPLLFSLFINDLPSVLEYCAVHLFADDVQIYLCCHKNMSLDEVARRINSD
FT                 LQKLFEWSNRNLLPINSTKTKALLINKSRDALRTPDLYLGGENIEFVDQAS
FT                 NLGMIFTSNLCWDAQINQQCRKIYYVLKQLNLVTIHLDAQIKTKLFKALLL
FT                 PHFIYCDFIYSNASMAAMNKMRLALNACVRYVHCLPRYSRVSHLHESLLGC
FT                 SFRRFYEYRLCLNFHKIIKSRTPNYLFSKITRMRQPRTMNFSIPQHYSVYY
FT                 GQSFFVRSIVHWNALPISIKLCSSVIGFRRDLIRFSNMN"
XX
SQ   Sequence 4488 BP; 1395 A; 853 C; 785 G; 1454 T; 1 other;
     cagttcctga agggatgttg gcaatcgagt gatagattga gttggtgcag ttttcaagtg        60
     gttattcccc attgccgtgt gccagataat tgtatcaaat tagctattta aatcgctaat       120
     agcagtttac gttgtggtat agtgaaaaat aactgttttg aaaccaaatg cttcggttat       180
     tcgtcaatat ttaattctat cggattgctc gccaaaaaca catcccttca gaagtttcat       240
     tatacccaac cttgctataa tacatcatta ccacaatgag cgtaaataaa catcaacaaa       300
     acaacgacag tgatagcaaa acaatgaatg cagatgtttt gtggaaaggc atccatcgga       360
     tgatttcttc tgccactgcg aaactggaag caatgatcga gtcatatgtg tccaatctcg       420
     aagcttgtat tgtttgtgtc gaacgtcgca tcgagtccat caaggatgaa tacaacaata       480
     atttggacaa ccttacgaaa gaaatcaatt ccattcgtac tgatcatcag ctcaaacttc       540
     aacaccttag tcgaatggag agagcgttgg atttagtttt cacgggtgtc ccatatcatc       600
     ctgatgaaga tctaaatcaa atatatcgtc gtattgcctg cgttattggt gcccccgacg       660
     agcattcgat agtacatcta aaacgactat acaagcaccc tgtacaatct ggatcatcac       720
     caccaattct ctgcagattt gccttccgag gaataagaga cgtcttcttc aacaagtatc       780
     ttcatggcag atcgctggcg ctacatcaca taggcttcga aggaaaaggt cgcatctacg       840
     tgaatgagaa cttgacacca ctctccaggc gaatattgaa tgctgcaatc cgacaccgta       900
     atgaagggcg tttacataaa gtgtctacga agaatgggct ggtcgctgtt atcacccaca       960
     aagagtgtga cgtcattgta gtggatactc tcgatcgatg gctgcttcta gaatcaacct      1020
     tatcctaacc gatttctctt tcctgcctat tttattccat gtttcacatc cattattttt      1080
     tccattgctt ccatccgctc ctaaaagtca aaacattatc acctttccca gcttatctca      1140
     cttttgtcca tgtatccaat ccttcaawat ccttgttgtt tccttcctga aagtattgag      1200
     ggttggggat gtggatatgt ttccactcgt tgttgctgtt gctgacgctg ttggacgctg      1260
     ttgctgttgc tgctataaat ttgctgttga ttaccacatt aatatgctcg atgctgctaa      1320
     tggattattg agtgccacgt tttgtttttc ttcagttgct tagagccact tgactgcacc      1380
     acagagtctg tgaaaattat gttagttaga aattttagtt tatggttcct ggtaattagt      1440
     atctgttcat gttgtgtggg tctcgataat gatcttagct taatccaact tcttgttcct      1500
     ataaatgctg aataacgtta acagtgatga tgcttccaca agtaatttga tacccagggc      1560
     ggttttgagg tcggctttag attcagattt gttcaacatt tgtcatatca atgttcagag      1620
     tttaacagcc cgtagatttt caaagttcaa tgaactaaaa atgaatttgt ttgattgtaa      1680
     tttggatacg atctgtatga cagaaacatg gttggatgat tccattgaaa atagaatgat      1740
     agctgtagat ggttacaaaa tttataggaa cgaccgtacc cgacacggtg ggggaatctg      1800
     tgtgtatgtt cgtaaaaact tagtatgccg tgtattagaa gcatcttcca tagtaggtaa      1860
     tgatgcacga attacggagt ttatgtgttt tgaagtcatg agtggcaaag atcggattat      1920
     gttagcagta tattataatc ccccagatgt agattgctca aatactttaa tgcaacactt      1980
     tgatcagttc actgtgaaat ataaatcaac ctttttcata ggtgatttta atacagatct      2040
     tctcaaaaat aatagcagac aaagacgatt cagagatgct atttcaggca tgtcttatgt      2100
     atgcgtcaat aatgaaccaa catactttca taacacagga tgctcgatgc tagacctctt      2160
     tttaactgat tcactggata aagtatgtaa gcatgaccag atttcgttgc ctggaatttc      2220
     ccatcatgac atgatatttg tatcgttaaa aatagaagca cctaatgtaa atgtcaatgc      2280
     atcctaccga gattacgctc atttcgatgc taatgcttta caaaatgcat tcaatgctat      2340
     aaactggaac gaatactttt cacaagacga tcccgatctt cttctgcaat ttctgaatga      2400
     aaaattactc atgatgcatg attcttacat acctctcaga atgatcagac ccaaaaaaaa      2460
     tcagtggttc acatctgaca tagagcgagc gattatttca agaaatattg cttataaaaa      2520
     ttggcttagg aataaaacaa gtgtcaatag tttacaatat aagcagattc gtaatagagt      2580
     taccaacatg attagaaatg ccaagtcaaa ctatgagaaa cgtgtattga atattaatat      2640
     gccaagcaaa caattgtgga gtaacattaa aaggcttggt gtttccaaag ataatagttc      2700
     cggtattgac tgtaatgctt ctccagacga cattaaccgt tacttctctt caaatttctc      2760
     ttctgatagt tatcctaatc attcatttcc agctaattca aatggtttcg ttttccgtga      2820
     agttaacgat tttgaaatcg tgaatgctat attcgatatc aagtctaatg ctataggact      2880
     agataacatc cccattcagt ttattaaaat agttttacca ttagcaatta ttcattttaa      2940
     acaccttttc aacaggatta tattgaccgg caaatatccc actgtatgga agcaagtcaa      3000
     ggttattccg attaagaaga aatccaaaag tactgatatt acgaacctta ggccaattag      3060
     tttactgtgt tcactttcga aagtcttcga aaaaatcttg aagattcaga tcagtgaata      3120
     catagatcat atgaacttcc tcgatccaca tcagtctggt tttcgtaaaa aacacagtac      3180
     cactactgca cttttgaaag tacacgatga catcgcccaa gctattgaca aaaaaggaat      3240
     cgctatactt ctactaatag attttgctaa ggcctttgac cgtgtatccc atcataaact      3300
     gctcaacaaa ttatcgtcaa agtttctttt ctcgaacact gctgtctctc tcattaaatc      3360
     atatctttgt gatcgtaatc aagctgtctt tcacaacatg atatattcat ctttcgtaga      3420
     tattaaatct ggcgtaccac aagggtcaat tcttggacca ttattatttt cattatttat      3480
     taatgattta ccgtctgttt tagaatattg cgctgtgcac ctgttcgcag atgatgtgca      3540
     aatttatctc tgctgtcata aaaatatgag tctagacgag gtagcaagaa gaataaattc      3600
     tgatcttcaa aaactttttg aatggtcaaa cagaaatctc ttaccaatta attcaaccaa      3660
     aaccaaagct cttttaatca ataaatctag agatgcactg agaacaccag atttatattt      3720
     gggtggcgaa aatatagagt ttgttgatca agcttctaat cttggtatga ttttcacatc      3780
     taatctgtgt tgggatgctc agataaacca gcaatgtaga aaaatatatt atgttttgaa      3840
     gcaacttaac ttagttacga ttcatttgga cgctcaaata aaaaccaaac ttttcaaagc      3900
     actcttacta ccgcatttta tctactgtga ttttatatac agtaatgcgt ccatggctgc      3960
     catgaacaaa atgcgtcttg cccttaatgc ttgtgtgcga tatgtccatt gccttcccag      4020
     atattccaga gtttcacatt tgcacgaatc attacttgga tgctctttcc gacgtttcta      4080
     tgaatacaga ttatgtttaa attttcataa aataattaaa tctagaaccc cgaattatct      4140
     attttcaaaa ataactcgta tgcgacagcc tcgtacaatg aattttagca tccctcaaca      4200
     ttattctgtt tattacggcc aatctttctt tgtgcgaagc atcgtacact ggaatgcgtt      4260
     acccatcagt attaaattat gttcttctgt tattggattt aggcgggatc ttatcagatt      4320
     cagcaacatg aattaggtag tacggaacct tcaggaacta ggaaaataga attgtataag      4380
     ataagtgaat taaatcatga actccaattt gaagtcagtt tgtggcaatt taaaagacaa      4440
     tgtcttacgt cgcaataatt attacaaata aataaataaa taaataaa                   4488
//
ID   Kiri-34_AAe repbase;    DNA;    INV; 3914 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-34_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3914
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 729-729 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..688
FT                 /product="Kiri-34_AAe_1p"
FT                 /translation="MMLLLSQSSTTINWLPMGIVSNDLSFNFLLPPLVIHD
FT                 SHPSSPLIVPLLKVYNRSALPKNILENPSRMYPMNPFLSISMISSILKVNR
FT                 GGTQEMPWITAVTVVVNAVVVAAASLDHTAAAVAVFFC"
FT   CDS           856..3708
FT                 /product="Kiri-34_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLCFPMMSVSQISDVAHSNTSIANIPRAVMNVALRND
FT                 CINLCHMNVQSLCARQLSKFDEFKNCFINSKLDLICVTESWLHENIPDSSI
FT                 AVEGYNFLRNDRGHSRGGGICVYYKNDLFCKEIAASQPSGDGNRTEYLFIE
FT                 VRVNQDAFLLGVIYCPPGVDCAGVLEQKLAELSCSYTKIILIGDFNTNLKK
FT                 SCIRTNRFCSVMDSFGIFCINNEPTHFYSGGCSLIDLLLTNDENFVLNFNQ
FT                 VSAPGFSQHDIIFSSLNISRSRMQHSVPYRDYNRINISELQDALNAIDWSL
FT                 LYSITDSDIALDFFNNCITELYENYVPLRYPRPNRNAPWFNDTVLNAIVIR
FT                 DIAYRQWLRSKNASDRAQFKRLRNRVTDIINQAKSDYLCMNLQSTTSSKVL
FT                 WKKLKKLNVTGNNDNSKSNFTNNEINDYFGENFTRDASLSPIPPSNIDGFN
FT                 FSPCTEMEVSAAIYSISSDAIGLDGIPLRFVKMILPMIICPLTFLFNLSIT
FT                 TSKFPRAWKSAKIIPIRKKPTGDNLDNLRPISILCSLSKVLEKILKNQIQN
FT                 YIQRHTLLSRYQSGFRSAHSTTTALLKVHDDIHQAIDKKGIAFLLLIDFSK
FT                 AFDRVSHVKLLQKLSQNFGFSRKAVYMIKSYLDCRSQVVELNGNRSSPVSI
FT                 LSGVPQGSVLGPLLFSLFINDLPSILKTCFVHMFADDVQLYFFSTNMDISS
FT                 MAHLINADLRNVALWSANNLLPINASKTKAMFICRRLIRPVLPDLFINGNK
FT                 IDYVNKTTNLGIIFQNNLEWDSQVNLQCGRIYAGLRQLKLTADMLPIPIKV
FT                 KLFKSLILPHLSYGSELILNASAAAYNRLRIALNNCIRWVFHLSRYSSVTH
FT                 LQRRLLGCSFYDFFKLRSCLSLFRIIHHGPKYLADKLHIFRSSRIQHFILP
FT                 QHYSSYYGNTFFVRALVTWNQLPSSIKSIHSAVRFQRACVSWLNEGR"
XX
SQ   Sequence 3914 BP; 1115 A; 743 C; 741 G; 1308 T; 7 other;
     ggctagcagt tgcgcttggg tastgcgaat ctgacatccc gttggtgtat accaaacgac        60
     tgtccsgtgc tccaataawt gctggkgcaa caccgcctag cttcgaagga tgaattctkc       120
     gtacggtatc tttctaggaa gaatttgagc ttgagtcatc tcggtgtcgg tgctgaaaaa       180
     cgagtttatt tgaacgaaag tttgactgaa gctgcacgga wcatcaaagg gatcgctctc       240
     aagctgaagc gttcgggcca tatwaggaat gttttcacga agggaggagt gatatttgtg       300
     aagccgttgg atgatgttgc tgctcagcca atcttcgacg accatcaact ggttgcctat       360
     gggcatcgta tctaatgacc tttccttcaa ttttcttctt cctcccctag ttatccatga       420
     ttcccatcct tcttctcctc tgattgttcc tctcctgaaa gtttacaatc gttctgccct       480
     tcctaagaat attcttgaaa atccttccag aatgtatcct atgaatccat tcctttcaat       540
     ttccatgata tcttccatcc taaaagtcaa ccgtggaggg acacaggaga tgccctggat       600
     tactgctgtt actgtggttg ttaatgctgt tgttgttgct gctgcctcgt tggaccacac       660
     cgctgctgct gttgctgttt ttttttgtta gctcttaatt atgtccaata gttgaattta       720
     cgatatcgga ccacttgata attatgctag gtttatttag agattttgca atgattagta       780
     cctacgccat tgacctgttg cgctatccat tcacttctat ccttcatttt tgcttgctca       840
     ttacgtcaca cttgaatgct ttgcttccca atgatgtcgg ttagtcaaat aagtgatgtt       900
     gcgcattcaa atacaagtat tgccaatatt ccacgagctg tgatgaatgt tgctcttcgt       960
     aatgactgta ttaatttatg tcacatgaat gttcaaagcc tgtgtgctcg tcagcttagt      1020
     aaatttgatg aattcaaaaa ttgcttcatt aacagcaaac tagatttgat ttgtgtaact      1080
     gaatcttggt tgcatgaaaa tatacctgat agctcaattg cagtcgaggg ctacaacttt      1140
     ttaagaaatg accgtgggca tagtcggggt ggaggaattt gcgtgtatta taagaatgat      1200
     ctgttttgta aagaaatagc cgcctctcag ccgagtggtg atggcaatag aaccgaatat      1260
     cttttcatcg aagttcgagt aaatcaagac gcatttttac ttggtgtgat ctactgtcct      1320
     ccaggagtgg attgtgctgg tgttttagaa cagaaacttg ccgaactgtc ttgtagttac      1380
     actaaaatta tattgattgg cgattttaat acaaacttga agaagtcttg catcagaaca      1440
     aaccgtttct gtagtgtgat ggacagtttt ggtattttct gtataaataa cgaaccgact      1500
     catttttact ccggtggatg ttcacttatc gatttgttgc taactaatga tgaaaatttt      1560
     gtgttaaatt tcaatcaggt ttctgctcca ggtttctctc agcatgatat aattttttca      1620
     tcattgaata tttcacgatc tagaatgcag cattcagtac cctacagaga ttacaatagg      1680
     ataaatattt cagagcttca ggatgcttta aacgcaatcg attggtcgtt gttatatagt      1740
     ataactgatt ctgatatagc gcttgacttt ttcaacaact gcatcactga actgtatgaa      1800
     aactacgttc cactgcgata tccacgtcca aatcgaaatg ctccgtggtt caatgatact      1860
     gttctgaatg ctattgtcat tagagacata gcttaccgtc aatggctccg cagtaaaaac      1920
     gcttcagatc gtgctcagtt caaaagactc agaaatagag tgaccgatat aataaatcaa      1980
     gctaaatctg attacctgtg tatgaacttg caatcaacaa cctcgagtaa agtattatgg      2040
     aaaaaactca aaaaattgaa cgttactgga aataatgata attcaaaatc taactttact      2100
     aataatgaga tcaatgatta ttttggggaa aattttaccc gggatgcatc attgtctcca      2160
     attcctccat caaacataga tggattcaat ttttcaccct gcactgaaat ggaagtgtca      2220
     gcagctattt attcgatatc ctctgatgcg attggtttgg atggaattcc tttgcggttc      2280
     gtaaagatga tacttcctat gattatctgt ccattaacat ttttatttaa tctatcgatc      2340
     acaacttcaa agttcccacg tgcatggaaa tctgcaaaaa ttattccaat tcgaaagaaa      2400
     cccacaggag ataatctaga taaccttcgc cctatcagta tcctttgctc tttatctaaa      2460
     gtacttgaga agattttaaa aaatcagatt cagaactaca ttcagcggca tactctatta      2520
     agtcgttatc agtctggatt tcgttctgct catagtacaa ctactgctct tctcaaggta      2580
     catgatgata ttcatcaagc tattgataag aaaggtattg cgtttttgct tctgatcgat      2640
     ttttcaaagg catttgacag agtttcccat gtcaaattgt tacaaaaact atcgcaaaat      2700
     tttggtttca gtcgcaaagc agtttatatg atcaaatctt accttgactg tcgctctcag      2760
     gtagtggaac tgaatggaaa tcgatctagc cctgtcagta ttttatcagg ggtacctcaa      2820
     ggatccgtat tggggcccct cttgttttca ctattcataa acgatcttcc atctattttg      2880
     aaaacgtgtt ttgttcatat gtttgctgat gacgtacagc tatatttctt ttcaactaat      2940
     atggatataa gtagtatggc acatcttatc aatgctgatc ttaggaatgt agccctatgg      3000
     tccgcaaata atttgctacc aattaacgca tctaaaacaa aagcaatgtt tatctgcagg      3060
     cggctcatac gcccagttct gcctgacctg tttattaacg gtaacaagat agattatgta      3120
     aacaaaacga caaacttggg tattattttt caaaataatc tggaatggga ctctcaagtg      3180
     aatttgcagt gcggaagaat ttatgcaggc ttaaggcagc ttaaactaac agcagatatg      3240
     ctaccaatcc ccataaaagt aaaacttttc aaatcgctca tattacctca cctgtcttat      3300
     ggatctgaat taattttaaa tgcttctgcc gctgcataca atcgcttgag aattgctttg      3360
     aataactgca ttcgatgggt ttttcattta tcaagatact caagtgtcac tcacttacaa      3420
     cgtcgattat tgggatgctc tttttatgac ttttttaaac tgcgtagttg tttatcctta      3480
     ttcagaatta tacatcatgg tcctaaatat cttgctgaca agctacacat ctttcgcagc      3540
     agtcgtattc aacattttat tttgcctcaa cattattctt cgtactatgg caatactttc      3600
     tttgttcgcg cacttgttac atggaatcag cttccatcta gtataaaatc aatacattca      3660
     gccgtaagat tccagcgggc gtgtgtgagc tggcttaatg agggtaggta aatggaatgg      3720
     atgttaaata gcaagaggtc aatgagtttg tttgtttttt ttttaagtta aattgaattg      3780
     aaagtgtatt ggattgtatt agatttcgaa tgagtggttc aggcaacgaa agtaccgatt      3840
     gtagagcgtt ataagggtta cccttaatct acaagtatat ggatgaataa atgaaatgaa      3900
     atgaaatgaa atga                                                        3914
//
ID   Kiri-35_AAe repbase;    DNA;    INV; 4829 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-35_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4829
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 730-730 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..1081
FT                 /product="Kiri-35_AAe_1p"
FT                 /translation="MSNHESNKPLTRSTSTSSSSLFTKGDVNKQSKSDQDV
FT                 ESLNDLWNKIRKMFADSKSDIEAKIDSCKEDLEQKIGNIEQQLSVLRTECK
FT                 AEIKNVSDSVTVVRDDLELTRRNVHRSGTINELIVSGIPYTSDENLLEIFL
FT                 NISKALSYNSSEVPMVYLKRLSKLPIKAGSAPPILCQFSLRGVRDEFYARY
FT                 LRLRTLNLCHVGFNNQNRVYINENLAREDREIRTQAIKLKKQGRIQQAFTR
FT                 NGIVFIRVKNGDDAVPYYTLEQLFASVN"
FT   CDS           join(1864..3054,3017..4684)
FT                 /product="Kiri-35_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVDNIVNNASASTLIPKALFHAVLSNDKINICHVNVQ
FT                 SLCARRFSKFDELKSNFFGSKIDVVCMTETWLSDVITNTMISMEGFNLLRN
FT                 DRNRNGGGICIYFRPNLSCKVIKKSTSNLSNVTEFLLVEVSGAGDPFLLGV
FT                 YYNPPEVDCSDTLKEHFEELTVKYNRTFFIGDFNTDLLKSTPRSRRLNDTI
FT                 STMSYTCVNKEPTFFYSSGCSLLDLLITDSPDVVSNVNQVSMPFVSKHDLI
FT                 FASLNLNKPRQEPIVYRDYKNFNANLLSVAFQRMEWNQLLSITDSDILIEA
FT                 LNNNLKFLHDNFIPIRKRIEKVNPWFNREIEIAIIARDIAYSNWKQSRSEQ
FT                 EFGHFKNLRNRVNLLIRDAKRRYDRRKFQSNLPSKHLWANIKKTRNFQASF
FT                 IRLKKLGISKPRSFDCSLSYNENDINQYFSENFTVDDAPRPFIHYQTRSHG
FT                 FSFRPVEEFEIINAVHEIKSNATGLDDIPIIFIKIMLPLILPYIKHLFNII
FT                 ISSSKFPRGWKTVKIIPIRKKANNDEINNLRPISILCALSKVLEKILKVQI
FT                 SSFISTMNFLHPLQSGFRQNHGTNTALLKVHDDISSVIDKRGIAILLLIDF
FT                 AKAFDRVSHRRLLLKLSEYFRFSVEANKLMHSYLAGRTQAVFHNGKLSSFR
FT                 NIESGVPQGSILGPLLFSLFINDLPSTLKYCSIHLFADDVQIYLCERDSSN
FT                 FCNLANKINHDLHNLYHWSTRNLLPINSSKTKAILISRGRSLNTMPDLYLN
FT                 GEKLNYVNSVNNLGIIFNSNLNWDDQICAQCRKIYGSLKTLSLTTKHFDKS
FT                 TKLKLFKALIFPHFIYGDFIYSNASWSSVDKLRLALNACVRYIFNLTRFSR
FT                 VSHLQKELIGCNFSNFYRYRSCVTLFKLMKLKKPDYLFVKLQPMRSDRNRN
FT                 FLIPQHQSAYYSQSLFARGVAYWNQLPLSIKSSVSISSFKRDLMQYLTL"
XX
SQ   Sequence 4829 BP; 1497 A; 874 C; 871 G; 1585 T; 2 other;
     gtttctgaag ggatgtgtgc tgtatagtaa agcgcttagt ggttgcagtc aaattgacct        60
     taatcgctgt gctaagttca actaatttca tgctgagtgc tgctaatgag ctattagtgt       120
     cagtgttata cattgaagtt gacattctgc agttctgaat cawaawatct tcggaaaaaa       180
     gaaaactaca agtgctatac cccatatagt atttggattg cccttcagga acgtttatca       240
     gccgtcaaca ttggtggacg tcaaacaaaa cgaaatgtca aaccacgaat ccaacaagcc       300
     actgacacga tccacatcta cctcatcttc ttcgttgttt acgaaaggcg acgtaaacaa       360
     acaatccaaa agtgatcagg atgtggaatc tctcaacgat ctctggaaca agattcgtaa       420
     aatgtttgcg gattctaaat cagacattga ggcgaaaatt gattcctgca aggaggattt       480
     ggagcagaaa atcggtaaca tcgagcaaca gctgtctgtt ctgaggacgg aatgtaaagc       540
     tgaaattaag aacgtttccg attcggttac cgttgtgcgt gacgacttgg agctcacaag       600
     aaggaacgtt catcgctctg gtacaatcaa cgagttgatt gtgtctggta tcccctacac       660
     ctccgatgag aatctcctgg aaatatttct caacatctct aaggctctat cgtataactc       720
     atctgaagta ccgatggtat acctgaaacg tctctccaag ttacccatca aagctggttc       780
     tgcccctcct attctatgcc aattctcatt gcgtggtgtg cgtgatgagt tctacgcaag       840
     gtatcttcgg ctgagaacac tgaatttatg tcatgttggc ttcaacaatc agaatcgggt       900
     atacatcaat gaaaatcttg cgcgagaaga tcgtgaaatt agaactcaag cgatcaagct       960
     taaaaagcag ggacgtattc agcaagcttt caccagaaat ggaatcgttt tcatccgagt      1020
     gaagaacggt gatgatgctg taccgtacta cacgctggag cagctcttcg catcagtcaa      1080
     ttaacctatc caataagttt ctcttctcct tacattattt ccatgaatcc tttccttgtt      1140
     tttccgtttg catccattcc ctcctgaaag ctacacattt ttttttcata taatttacct      1200
     ttccttgata aatcataatt tcctaccgtg ctttcctatg tttccgttcc ttagatatcc      1260
     gtgaattctt ccttcctaaa agtcaataca atgtgcaatg ctgatatcga tcacgagtct      1320
     attgatgacc acgatgatga tgacgatgac tatgacgcta ttaactacaa cgaccacgac      1380
     gaaaacgact gtgacgacga taacatggac tgcgtataat gatgatgacg atgatgacta      1440
     tgacgaccac gacaaaagtt gatggctgat gatgatcatt tttggatggc gtgtggatat      1500
     cggatgaatc aaggattgtg ttgctgctgc tgttgttgtt gttgtttgct gtgatggtta      1560
     ctgctactgt tgatactgct actgttgttc atttgatttt tttttgcttt tgtttacttt      1620
     ttgctcattt gaaaatgatt cagctaccta atttgaattt aacttatctt tgctgttcat      1680
     tctttttagt actaagtcaa tttgattgca ataactagtt catgactttc atgttcagaa      1740
     atttaatgtt agatattatt attagttgta ggttaagctt tctcatcatt aaaaccaatt      1800
     tattattgtt gaattcactg cataggtctc ttttaggttt aacgatatgt ttgatatttg      1860
     atcatggttg ataacattgt aaacaacgcc tctgcatcca cgttgattcc taaggcactg      1920
     ttccatgctg ttctgagcaa tgacaagata aatatatgtc acgtcaacgt ccaaagtctt      1980
     tgtgctcgac gattcagtaa attcgatgag ttgaaaagta acttctttgg tagcaaaata      2040
     gacgtagtct gtatgacgga gacctggctt agtgatgtta taactaatac aatgatatcc      2100
     atggaaggtt tcaacttgct acggaacgat cgcaatcgaa acggaggtgg tatttgtata      2160
     tattttaggc caaatttatc ttgtaaagtt attaagaaat ctacatcgaa tttatcaaac      2220
     gtaacagagt ttttgttagt tgaagtaagt ggtgctggtg atccattttt gttaggtgtg      2280
     tactataatc caccagaagt tgattgctca gatactctga aagagcattt cgaagagctt      2340
     acggttaaat ataatcggac tttcttcata ggagacttca atactgatct tctaaagagt      2400
     actcctagat cgcgaagatt aaatgacact atctctacaa tgtcttacac gtgtgtgaac      2460
     aaagaaccaa ccttcttcta ttctagtgga tgttctctac tcgatcttct cataacggat      2520
     tctcctgacg tagtttctaa tgtcaatcaa gtttcaatgc catttgtttc taagcatgat      2580
     ctgatttttg cttccctaaa tttaaacaaa cctagacaag agcccatagt ttaccgagac      2640
     tataaaaatt ttaacgccaa tctcttaagt gttgcatttc aaagaatgga gtggaatcaa      2700
     ttgttaagta taacagattc cgatattctc atcgaggctc tcaacaataa tttgaaattt      2760
     ttgcatgaca actttatacc cattagaaaa agaattgaaa aagtcaaccc gtggttcaat      2820
     cgtgaaattg aaattgcaat tatagccaga gatattgcct attctaactg gaaacaaagt      2880
     cgtagtgaac aagagtttgg gcatttcaaa aatcttagaa atagagttaa tttgttgata      2940
     agggatgcca agcgccgtta tgaccgcaga aaatttcaat caaacttacc tagtaagcat      3000
     ctctgggcca atataaaaaa aactaggaat ttccaagcct cgttcattcg attgtagttt      3060
     gagctacaat gagaatgata tcaaccaata tttttctgaa aatttcacag tcgatgatgc      3120
     tcctagacct tttattcact atcagactag atcacatggg ttttctttcc gaccggttga      3180
     agaatttgaa attattaatg ctgtacatga gatcaagtcg aatgctaccg gtttagatga      3240
     tattcctatt atattcatta agattatgtt gccccttatt ttaccatata ttaagcattt      3300
     atttaatatt ataatttctt catcaaaatt tcctcgtgga tggaaaacgg ttaaaataat      3360
     tcctatccgg aaaaaagcta ataatgatga aattaataac ctcagaccta tcagtattct      3420
     gtgtgcgctt tccaaagtat tagaaaaaat attaaaagtt caaatatctt cttttattag      3480
     taccatgaat ttccttcatc ccttgcaatc aggatttcgt cagaatcatg gtacaaatac      3540
     tgcacttctt aaagttcatg acgacatttc ttcagtgata gacaaaaggg gcatagcaat      3600
     tctattgctt atagatttcg cgaaagcatt tgaccgcgta tctcatcgaa ggcttttgct      3660
     gaagctaagc gaatatttcc gattttctgt agaggcaaac aaattgatgc attcttattt      3720
     ggctggtcgt acacaggcag tatttcataa cggaaaattg tcaagcttca gaaatataga      3780
     atctggtgtg ccccaagggt caattctagg gccccttttg ttctcattat ttattaatga      3840
     cttgccgtcg acattgaaat attgctccat acatctgttc gcagatgatg tccaaatcta      3900
     tttatgcgaa cgcgacagtt cgaatttctg caatttagcc aataaaataa atcatgatct      3960
     tcacaatctt tatcattggt ccacacggaa tctgctgcct ataaattcgt cgaaaactaa      4020
     agccattttg ataagcaggg gaagaagctt gaatactatg cctgatttat atcttaatgg      4080
     tgaaaaatta aattatgtta atagtgtgaa taatctgggc ataatattca attcgaattt      4140
     aaattgggat gatcaaatat gtgctcaatg tagaaaaatt tatggtagtt tgaaaacatt      4200
     gtctttgaca accaaacatt tcgataaatc gaccaaactg aaactattta aggctttaat      4260
     cttccctcat tttatctatg gtgattttat ttattcaaat gcttcatggt cttcagtcga      4320
     taagttgcga cttgctttga acgcatgcgt tcggtatatt tttaacctaa caagattttc      4380
     cagagtatct catttacaaa aagaattaat tggttgtaat ttttctaatt tttataggta      4440
     tagatcatgc gttacactgt tcaaattaat gaagttgaaa aaaccagatt atttgtttgt      4500
     taagttacaa ccaatgcgaa gtgacagaaa tagaaatttt cttatacctc aacatcagtc      4560
     tgcctattat agccaatcgc tgtttgcacg aggcgttgcg tattggaacc aattacccct      4620
     tagtattaaa tctagtgtgt ccatatctag ctttaaaaga gaccttatgc agtatttgac      4680
     attataaatt ggtaaaattg tgggatagct caataaatat gaaagcataa ttgaagcaat      4740
     tgaatcacta ggtgtaacga taaaaaaggc cgtagcctta tgttacatga ataatactga      4800
     ataaataaat aaataaataa ataaataaa                                        4829
//
ID   Kiri-36_AAe repbase;    DNA;    INV; 4656 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-36_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4656
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 731-731 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           288..1106
FT                 /product="Kiri-36_AAe_1p"
FT                 /translation="MNQNKSAKTNPPITRSVSTSSVCSEGNNNKRPRDDDD
FT                 SNCDMLDKIQQMFSASNAKIEAKIEASNSKLESRISAVENLLFSLKAECTT
FT                 SINNLSMAVTEVRAEIENTAQRLDRFEKASDLIISGIPYAVNENLVESFYK
FT                 LAAILGYNEVDRPIVDLRRLMRSPIPVGATPPTVCQFALKNARDAFYGRYL
FT                 RMRNLSLRHLGFDSDQRVFLNENLTKHARDIRTAAIKLKKQGVLKKVFTRD
FT                 GIVFIQYANGSNAEPVVDCKQLSIPQYSTLSK"
FT   CDS           1678..4497
FT                 /product="Kiri-36_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDNVPDENASLNTLIPRIVMNAALKNDHLNVAHINVQ
FT                 SLIARNFTKFHELRMSFSDSKVDVICFTETWLNSTISDAMVHIEGYKLIRN
FT                 DRNRHGGGIRVYLRKSFGHRVIEKSQFLDNNHGEIEYLVVEIKNRTEKVLL
FT                 GVVYNPPNNDCTDTISNLLGNLTVRYESTFFIGDFNIDLLNPNRSRKFKEM
FT                 LDSLSFVCINAEPTFFHRTGCSLLDLILTDSPEIVSKQDQLSMPGVSNHDM
FT                 IFCSIRLTQKNAEPVVTYRDYVNFDSTVLQAAFYNIDWDTFLSMTDPNDLL
FT                 DFMNYHLLLLHDNYIPLRCKKNSSTPWFSNEISSAIVNRDLAYRIWKRSKT
FT                 DNNRNNYKRLRNRVNTMISQAKINSDRLKFNANLPSKQLWNSIKKLGVTKD
FT                 SAFSNDDFSANDINDYFTSNFSNDASFESITTNSQGFSLLQFSEHDIVNSI
FT                 FSIKSNAIGLDNIPIQFLKLLLPLALPIYKHLFDSIIITSIFPRAWKSAKI
FT                 IPIKKKANCSTIGNLRPISILSAFSKVFEKLVKSQISKHVVDNNLLHPFQS
FT                 GFRSNFSTNTALIKVHDDIAHAVDKRGIAILLLIDFAKAFDRVSHSKLVRK
FT                 LTNLFGFSQSTANLIKSYLTDRYQAVLYNNELSSFSPIRSGVPQGSVLGPL
FT                 LFSLFINDLPNTLRFCSIHLFADDVQIYFSMTGNFSMAEIARKINHDLNCI
FT                 LQWSINNLLAVNPSKTKGMIISKLRNPPVQPELYFDGQRIQFYDKIDNLGV
FT                 IFTSNLSWDAFINSQCGKIYGSLKRLNTVSRHFEISTKIKLFKSLILPHFM
FT                 YGEFVYSNASAASLNKLRVALNSCIRYVYNLSRYSSVSQFQSSLIGCKFAN
FT                 FHAYRSCIQMYRLIKSKEPPYLFDKLQFLRNTRTNSLIIPQHSTSYYGNSM
FT                 LLRGISLWNRLSPNLKLSNSLNSFKEGLLEELERMQ"
XX
SQ   Sequence 4656 BP; 1464 A; 866 C; 837 G; 1487 T; 2 other;
     agtttctgaa gggatgaacg cttcagcgtg actgtgaaag tggtccagtt tttagttgat        60
     tatatcctgc tcccgttccg ccttaaacca cccagtgcct atgatacggt gaacgaaaca       120
     gtgatttgaa gttttatcat tgagttacct gaatatcgtt cgcgatcgtc tgctaaaacc       180
     tatattttcg tcgcgatcaa cgatagcgtt ccaagctagm ccccttcaga atattatctt       240
     tttgctttcg ttgttcaacg tcaaaattca acaaaagcta ttgcgttatg aaccaaaaca       300
     aatcagcaaa aacgaatcca ccgatcaccc gatcggtttc tacatcgtct gtgtgcagcg       360
     aagggaacaa taacaaacga ccaagggatg acgacgattc taactgcgat atgctcgaca       420
     aaatccagca aatgttctct gcttctaatg ctaaaataga agctaaaatt gaggccagca       480
     attccaaact cgagagtagg atttccgccg tagagaacct gctgttttct ttgaaagctg       540
     aatgtacgac gagcatcaac aatctttcga tggctgttac ggaggttcgt gcggagattg       600
     aaaatactgc ccaaaggttg gaccgtttcg agaaggccag tgatctcatt atctctggta       660
     ttccctatgc tgtcaatgaa aatctggtgg agtcgttcta caagcttgcc gcgatcctgg       720
     gttacaacga agtggatcga cccatagtgg acctcagacg gttgatgcga tctccgattc       780
     cagtcggggc cactccacca actgtttgcc agtttgcatt gaaaaatgca agggatgcgt       840
     tctacggacg ttatcttaga atgagaaatt tgtcgctacg tcatctgggc ttcgatagtg       900
     atcagagggt gttcttgaat gaaaatctca ctaaacatgc cagggatatc agaactgctg       960
     caattaagct gaagaaacaa ggagttctca aaaaagtttt cacacgtgat gggattgtat      1020
     tcattcaata tgctaacgga tccaatgcag aaccagtcgt cgattgcaaa caactgtcaa      1080
     ttccgcagta ctcaaccctt tccaagtagt tattcgcttc ctcccctcag ttatccgtgc      1140
     ctcctttcat gaatagtcca tgattccaac cactcctgaa agttagttct ctttgaaaac      1200
     aaccttatcc aaatagtttt tctatcctta atcttcttcc atgactcttt cctttggtta      1260
     ttcctttgac tccttccact cctaaaagtc aatgctgtca tcagtaatct gttgctgttg      1320
     ctgtggggaa cgtggctgct gttgtcgaga ggacgttgct gttgttgttg aaaaagcgct      1380
     gttactgtcg ttgagaggat gttgctgctg ctgctgttag gaaggcgtaa aagaatgttg      1440
     ttgtttctgt ttctctactt gcacactgtt ggtggtatta aaagtaatag tttgaattga      1500
     aagggaaaat aataagcaat gaattattac atatagctaa acactgaatc gcaaacctca      1560
     atgtaatgtt aatgttagta aatagtaaat attctttttt gttgttcaat attgcatgtg      1620
     ggatgggttc ttttagcgga ttttcttcaa agcggagttg caccactact tttgataatg      1680
     gataatgttc cagacgaaaa tgcttctctg aacacattga taccaaggat tgttatgaat      1740
     gctgcattga aaaatgatca cctaaatgtc gctcatatca atgtacaaag cctaatagcc      1800
     aggaatttta cgaaatttca tgaacttcga atgagttttt ccgacagtaa ggttgacgta      1860
     atatgtttca cagaaacatg gcttaatagc actatcagtg atgccatggt tcatatcgaa      1920
     gggtataaat taattcgtaa tgatcggaat agacacggtg gaggtattcg cgtgtatttg      1980
     aggaaaagtt tcggtcatcg tgtaatagaa aaatcgcagt ttttggataa caatcacgga      2040
     gaaattgaat atttagttgt ggaaatcaaa aatagaacgg aaaaagtcct acttggagtg      2100
     gtttacaacc ctcccaataa tgattgtact gacactataa gtaatttact aggaaattta      2160
     actgtgcgat atgaaagtac tttttttatt ggagatttca atatagattt actaaatccc      2220
     aaccgttcac gaaagttcaa agaaatgcta gacagcttgt catttgtttg tattaatgct      2280
     gaacctactt ttttccatag aactggttgt tctttacttg atctcattct aaccgactct      2340
     ccagaaattg tctcaaaaca agatcagctc tcaatgccag gggtttccaa ccacgatatg      2400
     atattttgtt cgatacgatt aacccaaaaa aatgctgaac ctgttgtcac ttatcgtgac      2460
     tatgttaatt tcgattcaac tgtattgcaa gccgcttttt acaacattga ttgggatact      2520
     ttcttaagta tgactgatcc taatgatttg cttgatttca tgaattatca tttacttttg      2580
     ctccatgata attatatacc tttaaggtgc aagaaaaaca gttcaacccc atggtttagt      2640
     aatgaaattt cttctgcaat tgttaaccgt gacttagcgt acaggatctg gaaacggtcc      2700
     aaaacagata acaacagaaa taattacaaa cgactaagaa atagagtaaa tacaatgata      2760
     tctcaagcta aaatcaatag tgacagactc aaattcaatg ccaatttgcc cagtaaacag      2820
     ctttggaaca gtattaagaa attaggagtt actaaagatt ctgctttttc aaatgatgat      2880
     ttttcagcta atgatattaa cgactatttc acctcaaact tttcgaatga tgcttcattt      2940
     gaatcaataa caaccaattc tcaagggttt agcttacttc aattttcgga acacgacatt      3000
     gttaacagta ttttttcaat caaatcaaat gcaataggac ttgataatat accaattcaa      3060
     ttcttaaaac ttctattacc cttagctttg ccaatctaca agcatctttt cgactcaata      3120
     attataactt caattttccc aagagcttgg aaaagtgcta agattattcc tattaaaaag      3180
     aaagcaaatt gttctacaat tggtaacctt cgtccgatta gtattctaag tgcattttct      3240
     aaggttttcg aaaagttagt aaaatctcaa atttctaaac atgttgttga taataatttg      3300
     ctgcacccat ttcagtcagg atttcgaagc aattttagta caaataccgc attgatcaag      3360
     gtccacgatg atatagccca tgcagtggat aaaagaggca tagctatact tttgctgatt      3420
     gatttcgcca aagcgttcga ccgagtgtcg catagtaaac tagttagaaa attaacaaat      3480
     ctgttcggat tttctcagtc aactgctaat cttattaaat cttatttaac ggatagatat      3540
     caggctgtat tatataacaa tgagttgtca tcatttagtc caattagatc tggagtccct      3600
     caagggtccg ttctaggacc tttattattt tccttgttta tcaacgatct tccaaatacc      3660
     ttgcgttttt gttcgattca cttattcgcc gatgatgtcc aaatctattt tagtatgact      3720
     gggaatttca gtatggctga gatagccagg aagattaacc atgacttgaa ttgcatcctc      3780
     caatggtcga taaataattt gttggctgta aatccatcaa aaacaaaagg tatgattata      3840
     tcaaaactca gaaaccctcc cgtacaacca gagctttatt ttgatggtca aagaatacag      3900
     ttttacgaca agatagataa ccttggggtt atctttacat ccaacttgtc atgggatgct      3960
     ttcatcaatt cccaatgtgg aaaaatatac ggttcactga agaggttgaa tactgtgagc      4020
     aggcattttg aaatttcaac aaaaatcaaa cttttcaagt cgttgatact tccccatttt      4080
     atgtacggcg aattcgttta tagcaatgca tctgctgctt cactcaataa attaagagtt      4140
     gctttaaatt cgtgtattag gtatgtgtat aatttatcta gatattccag tgtttcacaa      4200
     tttcaaagtt ctttaatcgg atgcaaattt gccaactttc acgcatatag atcttgtata      4260
     caaatgtata gactaatcaa gtctaaggag ccgccatatt tatttgataa gttgcaattc      4320
     cttaggaata ccagaacaaa tagcttaatt attcctcagc attcaacatc atactatggt      4380
     aattcaatgt tgttgagagg catttcactt tggaatagat tgtcaccaaa tcttaaatta      4440
     tccaatagtt taaatagctt taaagagggt ttgcttgaag aacttgaacg catgcaatag      4500
     atgaattaat catatgataa acaaattcag aaactttgac ttagagtaaa tgaattgttt      4560
     gtaaagctca catccaccac agtgtaacat taaaaaagga cttatcctta cgttacataa      4620
     atcsaaataa ataaataaat aaataaataa ataaat                                4656
//
ID   Kiri-37_AAe repbase;    DNA;    INV; 4104 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-37_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4104
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 732-732 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           222..737
FT                 /product="Kiri-37_AAe_1p"
FT                 /translation="MNPDFLSKIFRVLREGHEQLQKXIDRSMADLKRNLQA
FT                 SSDTSAASSFDHSSVVFDQASGLADEERVESFQRSPHCGYEDCAVYISVDT
FT                 RENLQRHRLCFSPSIPFTHQIVATKTRKPSRISHANRKHYHGYQTLTIGNT
FT                 TVLWIKLSDRRLKDRWKPDRVNFICGRAVVEAI"
FT   CDS           1082..3934
FT                 /product="Kiri-37_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLDNGNVNSVRTDGVFSCIPKVVMRTALLSDKLNICH
FT                 TNVQSLCARQLNKLDEFKICFENSNIDIICVTETWLTSNISDEMVAVEGYR
FT                 VIRNDRSYARGGGISIYCKNDLRCRVIAASDLSDADEGDVTEYVFAEVSFN
FT                 QSKFLLGVVYNPPRNDCSEIIEQKMAELSLHYQNVVLVGDFNIDMNVINAR
FT                 TSRFQSVMDNFDMHLINREPTHFHCGGCSLIDLFITNIPDFVVKFNQVAAA
FT                 GFSKHDMIFASLNISRSNVTSYRTFRNYAQIDYASLNDALYSIDWDHLYSI
FT                 TDSDTALDFFNFHLTQLHNSFVPLKIHKPRNQNGWFNNEIQFAIIERDLAY
FT                 RLWVSERSQYNHDQYKRLRNRANHKIKLAKIRYVSQTVNSSVSSKDLWRRL
FT                 KQLNVTSSSKSAVQPINTCDEINDYFASNFSEASSTVTVFPENSHGLRFHE
FT                 VTTFEVINAIDSITSNAVGFDEVPLKFVKMILPHIITQLTYIFNLIISTSK
FT                 FPNAWKMAKVIPIPKKTGSADLSNLRPISILSSLSKAFEKIIKSQIQTFLD
FT                 NNDLLYSRQSGFRSNHSTTTTLLSVHDDIHQEIDKNGTGFLLLLDFSKAFD
FT                 RVSHSKLLQKLSNQFCFSRSAVSLIRSYLHNRKQAVAVDDKYSEFVNIVSG
FT                 VPQGSVLGPILFSLFINDLPNVIKFCKMHIFADDVQIYLCSNRLSISEIAR
FT                 LINLDLRNIYRWSERNLLPLNPEKSQVLFMTRSRNNTVSPPSISLNNVPMK
FT                 YVDKISNLGVIFQSNLEWDSHINSQCRKVYNGLRHLKLTANFLPTATKLKL
FT                 FKTLLLPHLVYGSEFLLNASSRSLGRLRVAVNCCIRWIFNLSSYSSVSHLQ
FT                 PQLLGCSFSNFVKFRCFITLYKIINTAKPLYLHEKLQPFRSIRERNFRISR
FT                 VRTSYYRNTLFVRGIVYWNQIPAQIKISRSINEFRRGCISWLNTSNQ"
XX
SQ   Sequence 4104 BP; 1228 A; 785 C; 740 G; 1350 T; 1 other;
     gcttaaacga gcttggaaaa cataaatttt aatggttaat tctggtgttt ttgcgtaatc        60
     taactggtac gtgactacag ttaggaacag cctcatgagt gaacgccttt tcgaacaata       120
     gcaattgtac ctatacaaac aattggtact cagaactctc gccgacatta atcgttatta       180
     atccgtgctt attacgagat cttcatcaaa cttttgtcga gatgaatcca gattttctgt       240
     cgaaaatatt tcgagtgctt cgtgaagggc atgagcagtt gcagaaaasa attgacagat       300
     caatggctga tttaaaaagg aatctgcagg catcgagtga tacatcagca gcttcatcgt       360
     tcgatcattc atctgttgtc tttgatcaag caagcggact ggcagatgaa gagcgtgttg       420
     aatcttttca aagaagtcca cactgtgggt atgaggattg tgcggtttac atttcggtgg       480
     atactcgaga gaaccttcaa agacaccggc tgtgcttttc accttctatc ccattcactc       540
     accaaatcgt cgcgacaaag acacgcaaac cgtcaagaat atctcatgca aaccgaaagc       600
     attaccacgg ctaccaaaca ctcacgattg gtaacacaac tgttctatgg atcaagctgt       660
     cggataggcg tctaaaggat cgctggaagc cggatcgtgt gaattttatt tgcggccggg       720
     cagtcgtcga agcaatctga tctaccgaaa acaaacatcc taactcttct tttttttttt       780
     ttttttgcta atccatgttt acaacccaac ttatccgttg ttcttatcct cgctttcccg       840
     tgttatcttc cttctttaag cttaattgga gcaaactgct gatggctgtg tgctaatagt       900
     tgatcattca atcgttctct ttgaatcaag tgcaattttg ttcatttgag ttaggctttt       960
     ggtgcagaaa tgattttgta ttactcctta gtgtatcttt cacttctagt tactacaact      1020
     ggttactttg tgttgattgg gatgcattct ttctcgagct cgtacataac atttttcatt      1080
     gatgttggat aacgggaacg taaacagtgt acgcacggat ggagtattct cttgcattcc      1140
     caaagtcgtt atgcgtactg ctctgctttc cgataaactt aatatatgcc ataccaatgt      1200
     gcaaagcctt tgtgcacggc aacttaacaa gcttgatgaa ttcaaaatat gctttgaaaa      1260
     cagtaatatt gacatcatat gtgtgacaga aacgtggtta acttcgaata tatcggatga      1320
     aatggttgct gttgaaggtt acagggtaat tagaaatgat cggtcgtatg ctcgtggtgg      1380
     aggcatatct atctactgta aaaacgattt gagatgccgt gttatagcag catctgatct      1440
     atctgatgcc gatgaaggtg atgtcacaga atacgtgttt gcagaagttt cttttaacca      1500
     aagcaaattt ttattaggtg ttgtttataa tccaccaaga aatgactgtt cagaaattat      1560
     tgaacagaaa atggcagaac tctcccttca ttatcaaaac gtcgtgcttg tgggtgactt      1620
     taatattgac atgaatgtta ttaatgcaag aactagtaga tttcaaagcg ttatggacaa      1680
     ctttgacatg catttgatca acagagaacc aacccacttt cattgtggtg gctgctcatt      1740
     gatagatctg tttattacaa atatccctga ctttgtcgtc aaattcaatc aagtagctgc      1800
     agctggtttt tcaaaacacg atatgatttt cgcttcttta aacatctctc gttcaaatgt      1860
     gacaagctac cggacattta gaaattatgc tcaaatagat tacgcatcgt tgaatgatgc      1920
     tttgtattct attgattggg atcatttata ttccattacg gattccgata cagcgttaga      1980
     ctttttcaat ttccatttga ctcagcttca taactctttt gttccactaa aaattcataa      2040
     acccagaaac caaaatggtt ggtttaacaa tgaaatccaa ttcgccatca ttgaaagaga      2100
     tttagcctat cgtttatggg tgtctgaaag aagtcaatat aatcacgatc agtacaagcg      2160
     cttacgcaat cgagccaacc ataaaataaa attagctaaa ataagatatg tttcacaaac      2220
     ggttaacagt tctgtctcca gcaaagacct ttggcgtaga ctcaagcaac tcaatgttac      2280
     atcaagttct aagtcagcag tgcagcctat aaatacttgt gatgaaatca atgattattt      2340
     tgctagtaat ttttcagaag cctcgtcaac tgttacagtt tttcctgaaa attctcatgg      2400
     attacgcttt catgaagtaa caacatttga ggtcataaac gcaattgatt ctattacatc      2460
     taatgccgtg ggtttcgatg aggttccatt gaaattcgtc aaaatgatcc ttccccatat      2520
     aataacgcag ttaacgtata ttttcaatct gattattagt acatcgaagt ttcctaatgc      2580
     ttggaaaatg gctaaggtta ttcctattcc gaaaaagact ggtagtgctg atttaagtaa      2640
     tttacgaccg attagtattt tgagttcgtt gtccaaagct ttcgaaaaaa tcattaaatc      2700
     tcagattcaa accttcctag ataacaatga cctactttac tcgcggcaat cgggttttcg      2760
     cagtaaccat agcactacaa caactctact atctgttcat gatgacatac atcaagaaat      2820
     cgacaaaaat ggaactgggt ttttgttgtt actagacttc tcgaaggcgt ttgatagagt      2880
     atcccattct aagttgctac agaaattatc taaccaattt tgtttttctc gatcagcagt      2940
     ttcactcatt cgttcatatc tccataatcg taaacaagca gttgctgttg acgataagta      3000
     ttctgaattt gttaatattg tctcaggagt tccgcagggg tccgttttag gtccaatatt      3060
     attttccctt tttataaatg accttccaaa tgtaataaaa ttctgtaaaa tgcatatttt      3120
     tgcagatgac gtgcaaattt atttatgttc caacagattg tcaatatctg aaattgctcg      3180
     cttgataaat ctagatttga ggaatattta ccggtggtct gagcgtaacc ttttaccctt      3240
     gaatccagaa aaatcacaag ttctgttcat gactcgatct cgcaacaata cggtttcacc      3300
     accctccata tccttgaaca atgttcctat gaagtacgtt gacaaaatat ccaacttggg      3360
     tgtaattttc caaagcaact tagaatggga cagccatatc aattctcagt gtagaaaagt      3420
     ctataacgga cttcgtcatc ttaaactgac agctaatttt ttaccaacag caactaaact      3480
     taaattattc aaaaccttat tactgcctca tttggtgtat gggagcgagt ttttgcttaa      3540
     cgcctcttct cggtctctcg gcagactccg cgttgctgtg aattgctgta ttagatggat      3600
     attcaatttg tcgtcgtact ctagtgtttc acaccttcaa ccgcaattgc ttggatgctc      3660
     tttttctaat tttgtaaaat ttcgttgttt cataacattg tacaaaatca tcaacacagc      3720
     aaaacctcta tatttgcacg aaaaactcca accttttcgt agtattcgtg agaggaattt      3780
     ccgtatatcg cgcgttagaa cttcatacta cagaaatact ttattcgtgc gtggcattgt      3840
     ttattggaac cagattccgg ctcaaataaa aatttcgcgg tctatcaacg agtttcgcag      3900
     ggggtgcatc tcatggttga acacaagtaa ccagtagttt aaattgtatc tagaactaat      3960
     aacttgtttt tgaaatagtt gtaagttaag aaatgaattc gtcacataca tattgttttt      4020
     tttttctgaa tgtagaatta aaaaaggtaa taaccttact ctacatgtat tggtatggaa      4080
     ataaataaat aaataaataa ataa                                             4104
//
ID   Kiri-38_AAe repbase;    DNA;    INV; 4524 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-38_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4524
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 733-733 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1060
FT                 /product="Kiri-38_AAe_1p"
FT                 /translation="MGPDKHPSVQARPNNNKEYNETNPDTLMKVIHRMMST
FT                 LTESVEAMIESYVTNLDNRIVCIQRRIDALKVDYNASVDKLIEAVNDVRAA
FT                 HFSEMHRLDRLETQQDLVITGIPYHQDEDLQHIYCNIARSIGIAKPKESMV
FT                 TLRRLSKHPVRNSASPPILCHFAFRGLRDEFFNKYLHRRSLVLHQIGFQAS
FT                 DRIYVNERLSPHTRRILKAAIKLRNEGHVHKVSTKKGSVFVIFRKSNNSVL
FT                 VECIDQLLLHKSNLSK"
FT   CDS           1484..4348
FT                 /product="Kiri-38_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFFALSGFLPLIMLNDVSSVNASTNALIPRAVLRSAL
FT                 NSKYLNISHINVQSLLSRQLSKFNELKLNFADCKLDIICMTETWLDDSIDN
FT                 RIIAIDDYNVFRNDRNRHGGGICVYVRKNLICRILKSSIIDSSVRTTEFMC
FT                 LEILCGEERFMLAVYYNPPGVDCTNILSQHFDEFTVKYESTFFIGDFNVDL
FT                 LKRNSRQKQFNDILSSMSYVCINSEPTFFHQTGCSLLDLCLTDSPNKVLKH
FT                 DQLSMPGVSHHDMIFLSVKIVSPISSTPIYYRDYVHFDASALQNAFNRINW
FT                 NEYFSYSDPDMLLEFLNDKLLYLHDTYIPLKTCKVKKSPWFTADIERAIIS
FT                 RNIAYNNWLRDKTTVNCSLYKRIRNRVTMMIRNAKEDNDKRVINTNLPSKQ
FT                 LWNNVRKLGVANDRAHESFCDASSNEINCYFSSNFTSDSRPMHNFQVNSHG
FT                 FVFHEVEDFEIVNAVFDIKSNAVGLDNISIKFIKIILPLAVSVFRHLFNKI
FT                 IATSIFPVKWKQIKVIPIKKKSNCSDVSNLRPISLLCSLSKVFEKLLKYQM
FT                 CDFINRMDFLNQNQSGFRKKHSTNTALLKVHDDVAQAVDKKGVAILLLIDF
FT                 AKAFDRVSHRKLLNKLSSNFIFSNTAVTLIKSYLTGRTQTVFHNMEFSSYV
FT                 EIKSGVPQGSILGPLLFSLFINDLPSVLEYCSVHLFADDVQIYLCSDKTID
FT                 VDDMSRKINSDLQKLLEWAKRNLLMINPTKTKALLINRSRSTIRTPDLFLN
FT                 SEKVAFVDQASNLGLIFTSNLSWDAQVNQQCRKVYYALKQLNLTTRHLDIQ
FT                 TKIKLFKALILPHFIYCDFVYSNASMAAMNKLRLALNACVRYVYCLSRFSR
FT                 VSHFHKILLGCSFWRFLEYRICLTFYKIINSETPNYLFSKITRTRLPRTMN
FT                 FNIPQHTTIYYGQSFFVRSIVHWNSLPISLKSCTSLVGFKRELLSRFANLN
FT                 "
XX
SQ   Sequence 4524 BP; 1395 A; 848 C; 796 G; 1481 T; 4 other;
     tcamagttcc tgaagggatg agtgcaatcg agtgatagtt tttgttggtg cagtttcaag        60
     tggcggctac tcattactat gtgcctgaaa attccaacaa tatagcgatt caagctgctg       120
     atgatcgcct tcttcgtggt gtagtgaaaa ccctctgcta tatatcgaat taktcgaatg       180
     gttttaaatt gattttctat cccttkgcac atccaaataa tcatcccttc agaagtgttc       240
     aaccatttgc cgtttcacta aactcacgct gtcatctttt gtttgcacca tgggcccaga       300
     caaacatcca tcggttcaag ctcgcccaaa caataacaag gaatacaacg aaacgaatcc       360
     ggataccttg atgaaagtga tccatcgtat gatgtccact ttaacggaga gtgtggaagc       420
     aatgattgaa tcatacgtga caaatctcga taaccgtatt gtatgtattc aacgacgtat       480
     cgatgctctg aaggttgact ataacgctag tgtggacaaa ctaatcgagg cggtgaatga       540
     tgttcgtgct gcacattttt ccgaaatgca tcgacttgac cggttggaga cgcagcaaga       600
     tctcgtcatc acaggcattc cataccacca agatgaggat cttcagcata tatattgcaa       660
     tattgctcgc agcattggta tcgcgaaacc gaaagaatcg atggttacac tacggcggct       720
     ctccaaacat cctgtacgca atagtgcttc gccaccaatt ctctgccatt ttgccttccg       780
     tgggttgaga gacgagttct tcaataagta cttacatcgc agatctttgg tgctacatca       840
     aattggcttc caagcgagtg atcgaatcta cgtgaatgaa agactgtccc cacatactag       900
     gcgaatattg aaggctgcca tcaagcttag gaacgaagga cacgtacata aggtttctac       960
     gaagaaagga tcggtttttg taattttccg gaagtcaaac aactccgtcc tagtggaatg      1020
     cattgatcaa ttgctgctgc ataagtcaaa cctatccaaa tagttctctc tttccttcat      1080
     ttttgatcct tgactctatt ccccatattg tcctctgcct ccttccgttc ctgaaagtta      1140
     tttgtcttga acatcttaag tacctttccc agttttcaca ctattatcct ttgattccta      1200
     tcccattaca tcgtccatca ctccttccta aaagcaaagg ggggaggggg ctgctgttgt      1260
     tgctgtttga ttactgctgc tgttgctgtt gactgtcttc tgctggttct gatggtgctc      1320
     ggtgtttgct gctacacaat tgttgttgga attgatctct tttacawcgt gccatttgtc      1380
     tgcatcaaag taatttaatt tcttttgata gtaatgttat ttgtaatagt taggttaggg      1440
     ttcctgatat atcatacttt ttcatgttgt gcgggtttgg aagatgtttt tcgctttatc      1500
     cggctttctt ccgttgataa tgctaaatga cgtaagtagt gtcaatgctt ccacaaatgc      1560
     tcttatacct agggctgttc taaggtctgc tttaaattca aagtatttga atatcagcca      1620
     tattaatgtg cagagtctgt tatcacgaca actttcaaag tttaatgaac ttaaattaaa      1680
     ttttgctgac tgtaagttag acataatctg tatgacagaa acatggctag atgattctat      1740
     tgataatcga attattgcca ttgacgatta taatgtattc agaaatgatc gtaatagaca      1800
     tggtggcggt atttgcgttt atgttcgcaa gaacttaata tgtcggattt tgaaatcatc      1860
     gatcattgat agcagtgtca gaacaactga attcatgtgt ttagaaatat tatgtggcga      1920
     agaacgcttt atgctcgcag tgtattacaa tcctcctggc gttgattgca caaacatatt      1980
     atcacagcat tttgatgaat tcactgttaa atatgaatcc acttttttca ttggtgactt      2040
     caacgttgat ttgctaaaga gaaatagtag acaaaaacaa tttaatgata ttttatccag      2100
     catgtcttat gtgtgtataa acagtgaacc tacattcttt catcaaacag gatgctcttt      2160
     gcttgatctt tgtttaacgg attcaccgaa taaagttctc aaacatgatc aattatcaat      2220
     gcctggtgta tcacatcacg atatgatatt cttatccgta aaaatagtgt ctcctatttc      2280
     aagtacacca atttactatc gtgactatgt tcattttgat gcttctgctc tacaaaatgc      2340
     ctttaacaga ataaactgga atgaatattt ctcatacagt gatcctgaca tgcttctaga      2400
     gtttctaaat gataaattac tgtatttaca cgatacatac ataccattga aaacatgcaa      2460
     agttaagaaa agcccgtggt ttacagctga tattgaacgt gctattattt caagaaacat      2520
     tgcctataat aactggttaa gggacaagac tacagtaaac tgttcgcttt ataaacgtat      2580
     ccgaaataga gtaactatga tgatcagaaa cgccaaagaa gataacgata aacgtgtcat      2640
     aaacactaat ctaccaagta aacaattatg gaataacgta agaaaactgg gagtggcaaa      2700
     tgacagagca cacgaaagtt tttgtgatgc atcttcgaat gagattaatt gttatttctc      2760
     ttctaatttc acctcagata gtcgacctat gcataacttc caagtaaatt cacatggttt      2820
     cgtttttcat gaagtagagg atttcgagat tgttaatgca gtatttgaca ttaaatcgaa      2880
     tgccgtgggg ctagataata tttcgatcaa atttattaag ataattttac cactagcagt      2940
     ttcagttttt agacatcttt ttaacaaaat tattgctact tcaatatttc ctgtaaaatg      3000
     gaaacagata aaggttatac caattaagaa aaaaagcaat tgctccgatg tttctaatct      3060
     cagaccgatc agtttactgt gctccctttc caaagttttc gaaaaactgt taaaatatca      3120
     aatgtgtgat ttcataaata ggatggattt tctcaatcaa aatcaatcgg gttttcggaa      3180
     aaagcacagc acaaatacag ctttactaaa agtgcacgac gatgttgccc aagcagtcga      3240
     caaaaaagga gttgcaatat tattattaat tgattttgcg aaagcctttg acagagtgtc      3300
     acatcgaaaa ctgctcaaca aattatcatc taacttcata ttttccaata ctgctgtcac      3360
     actgatcaaa tcttatctta ccggacgcac gcagactgtc ttccacaata tggaattttc      3420
     ttcatatgtt gaaattaaat ctggagttcc tcaaggttcg attcttgggc cattactatt      3480
     ttctctattt attaatgatt taccttcagt tttagagtat tgttcagttc atcttttcgc      3540
     agacgatgta caaatttatc tttgcagtga taaaaccatt gatgttgatg atatgtcaag      3600
     aaaaattaat tccgaccttc aaaaactact ggaatgggct aaacgaaatc tcttgatgat      3660
     aaatccaact aaaacaaaag cattgctaat taatagatcg cgttctacaa taagaacccc      3720
     agacttattt ctaaacagtg aaaaggttgc atttgtagat caagcttcaa atttaggatt      3780
     gattttcact tcaaacctgt cgtgggatgc tcaagttaat cagcagtgta gaaaagtata      3840
     ttacgcatta aaacagttaa acttaacaac caggcacctg gacatccaaa cgaagattaa      3900
     gctcttcaaa gcgcttatac tgccacattt catctattgt gactttgttt acagtaatgc      3960
     atctatggct gcaatgaaca agttgcgttt ggctcttaat gcatgtgtgc gctacgttta      4020
     ttgtttgtca cgattttcaa gagtatcgca cttccacaaa atattgctcg gatgttcttt      4080
     ctggcgattt ttggaatata gaatatgtct gactttttac aaaataatta attctgaaac      4140
     accaaactat ttattttcta aaattactcg tacacgctta ccaaggacca tgaacttcaa      4200
     tatacctcaa cacactacta tatattatgg gcaatctttc tttgtgcgaa gcattgtaca      4260
     ctggaattcg ttaccaatta gtctcaaatc gtgtacatca ttagttggat ttaagcggga      4320
     acttctttcc agattcgcca atttgaatta gatattatat ggaaccttca ggaactagat      4380
     attgtaatgt taagttaagt tactgaattg aaaattttct tcttcttctt tgaaatcatt      4440
     ttgtggcaac aaaaaagact aggtcttacg tcgcaagaat tgtgaaataa taaataaata      4500
     aataaataaa ataaataaaa taaa                                             4524
//
ID   Kiri-3_AAe  repbase;    DNA;    INV; 4207 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   06-JAN-2011 (Rel. 16.02, Last updated, Version 3)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2_Ele4;
KW   Kiri-3_AAe.
XX
NM   Kiritsubo-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4207
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4207
RA   Kojima K.K. and Jurka J.;
RT   "A distinct group of non-LTR retrotransposons from the yellow
RT   fever mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele4.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 20 sequences with >97% identity, and ~98%
CC   identical to the original sequence in [1]. This family does not
CC   belong to the L2 clade and is renamed as Kiri. It could
CC   constitute a new clade with other Kiri elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..1046
FT                 /product="Kiri-3_AAe_1p"
FT                 /translation="MCTGMTSNTMDSIDGQLKPGSHLSTLDGLLKKVLHLC
FT                 EIECSTIRSKFQDSVSDIRNQISIVQNEITSLQTVYLQNVKKLAASVSAIE
FT                 KDLEKSRKERIDRSNDLIVSGIPYVPNENLNDMVQNIAQHLGYENNNLPIV
FT                 YATRLPKRTRKYRETTPVLIQFVTNLSREQFFRRYLAKRDLSLQHVGFNSR
FT                 QRVYINENLSTVDRQIWRYACKLRNDGKLVRVHLKNGIVLVKRSNDNHSTP
FT                 IHSMKQLFVFMKFES"
FT   CDS           1195..3645
FT                 /product="Kiri-3_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSDNMLNNVSSNEGIYHIPRAVMNAALRKDFLNICHM
FT                 NVQSICSRQLSKFNEFTSCFHNGKVDLICLTETWLTNDISDDTIAVEGFKL
FT                 IRNDRNYGRGGGVCLYFRSNLNCKKVSASDLFVGLGDACNTEFLFVEVSTG
FT                 ADKFLLGIFYNPPRVDCCELIFQQLSDHILKYKNIVLIGDFNMNVKKDSPI
FT                 VNRFCSVFDHFGFTCVGNEPTHYYSGGSSQIDLMFTNDPEFILNFNQVSGP
FT                 GFSAHDIIFSSLNVARSCFSSAVFFRDYKHINFESLNHTLTTIDWSALYSI
FT                 NDSNLALDYFNQVVLSLFDHFVPLRSSKLXRHNKWFNNDISRAMVERDLAY
FT                 RVWKRTKGQQERDQYKRLRNRVTMLINQAKSVYISRSSELSRSNNDLWRRL
FT                 KEINVKKSGAGMLFNNSCDEINNYFASNFTVDNYFPRLPPPNENGFRFVTT
FT                 NEYEIDKMINSITSDAVGLDGVPLKFIKLILPFVITPITHVFNTIILTCNY
FT                 PRAWKTAKILPIRKKSRGCDLKNLRPISILSALSKAFEKILKNQMLEFLNN
FT                 FNLLTDVQSGFRAGHNTTSALLKVHDDVHRTIDRKGIAFLLLIDFSKAFDR
FT                 VSHYQLLRKLSDQFNFSAPAVNLLQSYLTDRSQQVSIDANLSEIAHIVSGV
FT                 PQGSVLGPLLFTLFINDLPSVLKYCSIHMFADDVQIYFHSCNLSSSEMAHL
FT                 INEDLSNIYDWSCRNTLPINASKTKIMHISRARQSQSLPVISLGGETLSYV
FT                 NHVSNLGVIFQHDLEWDSHINTQCGKIYGGLKHLKLTANMVSVEIKLRLFK
FT                 SLILPHFLYGIELLQ"
XX
SQ   Sequence 4207 BP; 1280 A; 771 C; 734 G; 1417 T; 5 other;
     tttagcgatg attttgtagt gctaactaat gtgatcgact gttgtttatt catattatgc        60
     tgtttgaggt cccgatttat gtgctggtta tggagtttga tgattattgw tatcccagtg       120
     ctctcttctg gtgctttaat attcttatca attcgactgt gaacgccatc atagcgacgt       180
     ttctcacgtt catcattgtc tgctgagaga aaggtaactc acgggtttgt tctcgctctc       240
     gccctttgta ctattatcac gcgcctaaag caattgatat gtgtactggc atgacctcga       300
     atactatgga ttctatcgac ggccagctga agccgggctc ccatctttca acgttggacg       360
     gtttgctgaa aaaagttctt catctttgtg aaatagagtg ctccaccatt agatctaaat       420
     ttcaagatag cgtttctgac atcagaaatc aaatttcaat wgtgcaaaat gaaatcacgt       480
     ctttacaaac tgtttattta caaaatgtga aaaaactagc ggcttctgtt tcagcaattg       540
     aaaaagatct ggagaaatct aggaaagaaa gaatcgacag gtctaacgat cttattgttt       600
     ctggtatccc atatgtgccc aatgaaaact taaatgatat ggttcaaaat attgcacaac       660
     atctcggata tgaaaacaac aatcttccaa ttgtttatgc tactcgatta ccaaaaagaa       720
     ctaggaaata tagggaaacc acacccgtgc tgattcaatt tgttaccaat ttatccagag       780
     agcaattttt tcgacgttat ttagcaaagc gagatttatc actgcaacac gtaggcttca       840
     attctagaca gcgtgtatat atcaatgaaa atctaagcac agtagatcga caaatttggc       900
     gctatgcatg caaacttaga aatgatggaa agctggttag ggtacacttg aaaaatggta       960
     ttgttctagt taaacgctct aatgataatc attcaactcc gatacattct atgaaacagt      1020
     tatttgtgtt tatgaaattt gaatcttaaa tcatgaaatc atcgtttcag ccaccagctt      1080
     accattcgaa aataataata attattaatt gtacttatat catgaattca tctgtaatcc      1140
     ttctgttgat cctctttgcg ctctgcgttc cgcgctcata ctactattac cacgatgtca      1200
     gataacatgc taaacaacgt cagttcgaat gaaggtattt atcatattcc tcgtgctgtc      1260
     atgaatgcgg ctcttcgtaa agatttccta aatatttgcc acatgaatgt gcaaagtatt      1320
     tgttcacggc aacttagtaa gttcaatgag ttcacttcct gttttcacaa cggaaaagtt      1380
     gatttgattt gtttgactga gacatggttg actaacgata tttctgacga tactatcgct      1440
     gtagaaggtt tcaaattgat tagaaatgat cgcaactatg gcagaggggg aggtgtttgt      1500
     ctttatttta gaagtaatct aaactgcaaa aaagtttctg cttcagattt atttgtgggg      1560
     ctgggtgatg cctgtaatac tgaatttttg tttgtcgaag tatcaacagg ggctgacaag      1620
     tttttgcttg gaattttcta caatcctcca cgtgtcgact gctgtgaact tatttttcaa      1680
     cagttgagtg atcatatctt aaagtacaaa aatattgttt taataggcga tttcaacatg      1740
     aacgttaaga aggattctcc aatagtcaat cgtttttgta gtgtgtttga tcatttcggg      1800
     tttacatgcg ttggaaatga gccaactcat tattattctg gcggaagttc tcaaatagat      1860
     ttgatgttca caaacgatcc tgaatttatt ctcaatttca accaagtgtc cggacctgga      1920
     ttctcggctc atgatataat attttcttcc ttaaacgtag ctcgatcatg tttcagtagc      1980
     gcagtatttt ttcgtgatta caaacacata aattttgaat ctctaaatca cactttaact      2040
     acaattgatt ggtcagctct ttactctatc aatgattcta atttagcttt agactatttc      2100
     aatcaagtag ttttatcact ttttgatcat ttcgtacctc ttcgttctag taagcttktc      2160
     agacataata aatggttcaa caatgacatt tcwagagcaa tggtagagcg agatttagcg      2220
     tatcgtgttt ggaagcggac taaaggtcaa caagaaagag accaatacaa acgcttacga      2280
     aatagagtaa caatgctaat caatcaagct aaatccgttt atatttctcg ttcatctgaa      2340
     ttatctcgtt caaataatga cttgtggaga agactgaaag agataaatgt taaaaaatct      2400
     ggcgctggta tgcttttcaa caactcttgt gatgagatca acaactactt tgcgtctaac      2460
     ttcaccgtcg ataattattt tcctcgatta ccaccaccga acgaaaatgg tttcagattt      2520
     gttactacta atgaatacga aatcgataaa atgatcaata gtattacctc ggatgctgtt      2580
     ggattagatg gtgtacctct taaattcatt aaattgatct taccgtttgt gattacacca      2640
     attactcatg tcttcaatac aatcattttg acttgtaact acccacgagc atggaaaaca      2700
     gctaaaattt tgccaattcg taaaaaatct agaggctgcg atttaaaaaa tctaagacct      2760
     ataagcattt taagcgcgct ttcaaaggct tttgaaaaaa tactgaaaaa tcaaatgctt      2820
     gaatttttga ataattttaa tcttttaacg gatgttcagt caggctttcg tgcggggcac      2880
     aatacaacat ctgctctttt aaaagtccat gatgatgttc atcgtacaat tgataggaaa      2940
     ggaatcgctt ttttgctttt aattgatttt tctaaagcgt ttgaccgagt ctcccactat      3000
     caactgcttc gcaaactttc ggatcaattc aacttctctg ctcccgccgt gaatcttctg      3060
     cagtcctatc taacggatcg ctcgcaacag gtttcaattg atgcaaacct ttctgaaata      3120
     gctcatattg tctcaggmgt cccgcaagga tcagttttag gccctttact gtttaccctt      3180
     tttataaatg acctaccgtc tgtattgaaa tattgttcca tacacatgtt cgctgacgat      3240
     gttcaaattt attttcactc ctgcaacctt tcttcgtcag aaatggctca ccttatcaat      3300
     gaagatttat caaacatcta cgattggtca tgtcgcaata ctctacctat taatgcttct      3360
     aaaactaaaa taatgcatat ttcaagggct cgtcagtccc agtcactacc ggtcatttcc      3420
     ttaggaggtg aaactctttc ttatgtaaat catgtttcaa acctaggggt gatatttcaa      3480
     catgatctag aatgggattc ccacattaat actcaatgtg gaaaaatcta tggaggttta      3540
     aaacacctta agctcacggc taatatggtt tctgttgaaa ttaagcttag attgtttaaa      3600
     tcacttattc ttccgcattt tttgtatggt atagagctat tacaataatg cttcagctcg      3660
     agccctggac agattaagag ttgccctgaa ctgctgtgtt agatgggtct ataatttaac      3720
     aagattttct agtgtttcac gactacagca caatttatta ggctgtaatt tttatgattt      3780
     ttttaaacta cgttcttgca taacactctt taagataatc aaaacaacta caccgcatta      3840
     tctcttcact aaactgcaac cattccgtag catgcgtact tgtaattttg ttttaccgca      3900
     gtatgctaca tctcattatg gtggtacctt cttcgttcgt ggcgttgtgt tttggaacca      3960
     actacctcta gaaataagat ctattgatcg attggatagg ttccgaacag agtgcagaga      4020
     gtttttcaac agaaggaatt agtattagaa atatgaaaat agcaacgtat aagtgaacag      4080
     aattcagaaa ctgttatgtt tagttttaag tgtttttgta actaaatgaa ttcggaatgc      4140
     aataattgaa aaaggtgtaa ccttacattg caaattaata aatataaata aataaataaa      4200
     taaataa                                                                4207
//
ID   Kiri-3_CQ   repbase;    DNA;    INV; 5673 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5673
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 122-122 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..883
FT                 /product="Kiri-3_CQ_1p"
FT                 /translation="MSNRSTRSNSVPSLASLFELENGNQNKRSRKELNKDS
FT                 VPTMSLEDLWTKIESKMDSFKQDFDKRIDGLETQLSQLKTECTARIDDLSE
FT                 AVVEVRADLNLASNWIGRVEKYQDLIITGVPYSPTENLKTVFRDIAAKLAY
FT                 DPLDVPMVDLKRLAKPPIAAGSAPPILCQFAIRNERNAFYSKYLSLRNLNL
FT                 EHIGFNNKNRIFINENLTPQDREIRTAAIKLKKEGRIQQVFSRDGVVHVKS
FT                 RGGPAEACYTVEHLRSCSK"
FT   CDS           2668..5496
FT                 /product="Kiri-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MASSTTGNASANQYITRAVVNAIFDNTKLNICQINVQ
FT                 SLCARNLVKLEELRRVFKDSKADVVCFTETWLDTSITDSLIAIDGYNLIRN
FT                 DRNRHGGGICVYYREGLQCRVVEKSKSVRDTSSTEFLLLEIECLNDKLLMG
FT                 VYYNPPTVDCSEILSAQISKYSMKYKACFLIGDFNTDPNRSGAKSKRFNDV
FT                 LSGLAFHFANREPTYFYQTGCSLLDLLLTDSPNQISKFNQVSMPGISHHDL
FT                 ILASLEFSFTIPENRSYYHDYNNINYAELNEAFSRINWANYLNCAEPDILL
FT                 EFFNVNMLNLFTQFVPLKEFKVRKNPWFNAVIEKAMIDRDLSYRNWKRSKS
FT                 IEDKNHFKILRNRVNSLIEKAKSDHSNRILNTNVPSKKLWSNIKNLGIASK
FT                 TKSPVVCNSSVENINQYFSSNFSPSQGDFNSNLAAVDGFHFRAVEDYEIVN
FT                 AISSITSNATGLDNIPIRFINLMLPLILPIVKHLFNTIITTCIFPRDWKKI
FT                 KVIPIKKKSSSCDVTNLRPISLLSSLSKAFEKIIKYQLTEHVNRYDLLHPL
FT                 QSGFRKGHSTETALIKVHNDVARCIDRRGVAVLLLIDFSKAFDRVSHTKLL
FT                 NKLATSFGLSRPAVLLIESYLRDRSQSVFLNGFHSSFVDILSGVPQGSVLG
FT                 PLLFSLFINDLPPVLKFCSVHLFADDVQIYLCSDANINIADMQRKINSDLL
FT                 KVQSWSEKNLLAINPAKTKALLISRLKTPPNPPELFLKNELLEFVDHACNL
FT                 GVIFRNNLDWDKQINSQIGKIYGSLKQLSLTTRFLNSHTKLKLFKSLLYPH
FT                 FIFGDFIYPNATVESLNKLKVALNSCVRYVYNLSRYHRVSHLQKNLIGCSF
FT                 SDFYKYRSCLTLFRVMHTGEPNYLSSNIIPLRSSRSKQFLIPQHYSTYYSQ
FT                 SLFVRGISTWNLLPLNIKTSMSIPYFKRKLLAELNNPNQ"
XX
SQ   Sequence 5673 BP; 1823 A; 1199 C; 987 G; 1664 T; 0 other;
     gtgctgatgt ttacacttcg taaatcatta agttgaactc agccagcacg ccacaagcta        60
     tactcccttc agaagtctct ctgagttcca gtgctctgct ataatgagta accgctcaac       120
     tcgctctaac tcagtgccgt cactggcatc actgttcgaa ctcgagaatg ggaatcaaaa       180
     caaacgatcc cgcaaagaac ttaacaagga ttctgtgcca acaatgtcgc tggaagacct       240
     ttggaccaaa attgagtcca aaatggactc gttcaagcag gatttcgaca aacgcatcga       300
     tggactggaa acgcaacttt cgcagctgaa gacggagtgc actgcaagga ttgatgatct       360
     ttcggaagct gttgtagaag tgcgcgccga cttgaatctc gcttcaaact ggattggacg       420
     ggtcgagaag taccaggacc tcatcattac cggcgtaccc tactcaccga cggaaaatct       480
     caagactgtc ttccgtgata tcgcagctaa gctcgcatac gatccactcg atgtcccaat       540
     ggtagatctc aaacgtttgg ccaagccccc catcgctgcc ggatccgcgc cgccgatttt       600
     gtgccagttc gccattcgca acgagagaaa cgccttctac agcaagtacc tcagcctaag       660
     gaacctcaac ctcgagcaca tcggcttcaa caacaagaac cgcattttca tcaatgagaa       720
     tctaaccccc caagatcgcg aaatccgtac tgctgctatc aagctgaaga aagaaggtcg       780
     aatccagcaa gtgttcagca gagatggagt tgtccacgtc aagtctagag gaggtcctgc       840
     tgaagcttgc tacaccgttg aacatctgag atcctgcagc aaataatccc tttccaacaa       900
     gctactcttt tccttccatt cttcccttgt atccaatccc caaaattccc ccatgttttc       960
     ttccgtccta aaagcaaaaa aaaaaaaaga gaaatgcaaa aaaaaaagaa atgcaaaaaa      1020
     aagaaatgca aaaaaaaatc caaaaaaaac aaaaaaaaaa ttaacaaaat aaaaaaacac      1080
     aaaaaaaata caaaaaataa ctattaaaaa gtccgtaggt gacacaagcc aagtgtcgct      1140
     gagatagagg actcagccgt aggagaaacc cgactccttg tgggtcggtc gcctgaccta      1200
     caatgcgtcc tgcggtcact ccgtaggggt gcgcaggacg tggtaggtta agtggttact      1260
     ccgtaggggc gagctgaacc cccgagccag tggaggccac tgacggctgt tccaaaacaa      1320
     acccttttcc ctttacgctt ttctttttcc ttccccaagt ttctcctatg aatccgtttc      1380
     ccagttatcc ttgactccat tttcctctcc taaaagtaaa aaaaaaaaaa aaaaaaaaac      1440
     caaaaaaaaa caaaaaaaaa attaaaaaaa aagaaaaaaa caaaaaaaaa ttaaaaaaaa      1500
     acgccaaaaa aacaaaaaaa aataaccatt aaaagtccgt aggtgacaca agccaagtgt      1560
     cgctgagata gaggactcag ccgtaggaga aacccgactc cttgtgggtc ggtcgcctga      1620
     cctacaatgc gtcctgcggt cactccgtag gggtgcgcag gacgtggtag gttaagtggt      1680
     tactccgtag gggcgagctg aacccccgag ccagtggagg ccactgacgg ctgttccaaa      1740
     acaaaccctt ttccctttac gcttttcttt ttccttcccc aagttctcct atgaaccgtt      1800
     tcccagttat ccttgactcc attttcctct cctaaaagta aaaaaaaaaa aataaaaaaa      1860
     accaaaaaaa acaaaaaaaa taaaaaaaag aaaaaaacaa aaaaaaaacg ccaaaaaaat      1920
     acaaaaaaaa taaccattaa aagtccgtag gtgacacaag ccaagtgtcg ctgagataga      1980
     ggactcagcc gtaggagaaa cccgactcct tgtgggtcgg tcgcctgacc tacaatgcgt      2040
     cctgcggtca ctccgtaggg gtgcgcagga cgtggtaggt taagtggtta ctccgtaggg      2100
     gcgagctgaa cccccgagcc agtggaggcc actgacggct gttccaaaac aaaccctttt      2160
     ccctttacgc ttttcttttt ccttccccaa gtttctccta tgaatccgtt tcccagttat      2220
     ccttgattcc attttccctt cctgaaagtt aagttccggt ggaccctgag acgagtatat      2280
     ccccgtgcaa tctggattgt cggatcctgg accatttgcg atgttggcct gttgctgttg      2340
     ttgctgctgt gttggtgctg agatgtcggt tgttgctgcc ctcctgacgt ggcgatgtga      2400
     tgtttcgttt gctggttcct tcctgcgggc ggctatcgtt gattcagtgc tgatcaaagt      2460
     tctttactgt gatcctaacc tctgagtgag ttattgccag caccattcac tagttttttg      2520
     gaggagttct ttgatatgtt tctatgcttt ttcaatttaa aaattatagt tttagtttta      2580
     gaattaagtt tattttctca aatgttgaat ctgattctgt tgttgtgtac aggttaggtt      2640
     tgcgccgtcc ttcgatttac ctttataatg gctagttcaa caactggaaa tgcctcagct      2700
     aaccaatata taacaagagc tgttgtaaat gcaatctttg ataatactaa actaaacatt      2760
     tgtcaaatca acgtacaaag cttgtgtgca agaaatttag ttaaacttga agaattaaga      2820
     cgagttttca aggatagtaa agcggatgtt gtttgtttta ctgaaacatg gcttgatacc      2880
     tctattactg attctttaat cgcaattgat ggttacaact tgatacgaaa tgatcgtaat      2940
     agacacggag gtggcatttg cgtttattac agagaaggcc ttcaatgcag agttgtcgaa      3000
     aaatcaaaat ccgtacgtga tactagttct accgaatttt tgttacttga aattgaatgt      3060
     cttaatgata aattgttaat gggagtctat tacaatcccc caactgttga ttgctctgaa      3120
     attctttctg cgcaaatttc aaaatactca atgaaatata aagcttgctt cctaatagga      3180
     gattttaaca ccgatccaaa tagatctggc gcgaaatcaa agcgcttcaa tgatgtttta      3240
     agtggactag cttttcattt tgctaatagg gaaccaacat atttctatca aacaggatgc      3300
     tctcttcttg atctactatt aactgattcc ccaaatcaaa tttctaaatt caaccaagtc      3360
     tccatgccag gcatttctca tcatgatcta atcctagctt cacttgaatt ttcttttacc      3420
     atacctgaaa atcgttctta ttatcatgac tataataata ttaattatgc tgaattaaat      3480
     gaagccttca gcagaataaa ttgggcaaac tatttgaatt gtgctgagcc agatatactt      3540
     ttagaatttt tcaatgtaaa tatgctaaat ctatttacgc aatttgttcc tttaaaggag      3600
     ttcaaagtac gcaaaaatcc atggttcaat gcagtcattg aaaaggccat gattgataga      3660
     gatctatcct ataggaactg gaaacgtagc aaatccattg aagacaaaaa tcatttcaaa      3720
     attttaagaa atagagtaaa ctctttaatc gaaaaagcta aatctgatca tagcaatcgt      3780
     attctcaaca caaatgttcc aagtaaaaaa ctatggagta atattaaaaa cttaggaata      3840
     gcaagtaaaa ctaaatctcc agttgtctgc aacagctcag ttgaaaatat taaccaatat      3900
     ttctcttcaa acttttcgcc ttctcaaggt gattttaact ctaatttagc cgctgtggat      3960
     ggttttcatt tccgcgctgt tgaagactat gaaatagtga atgcaatctc ttcaattact      4020
     tctaatgcta ctggattaga caacattcca atacgattta ttaatcttat gcttccactc      4080
     atcctaccaa tagtcaaaca tctatttaac acaattatta caacttgtat ttttcctcgg      4140
     gactggaaaa agattaaagt aattccaatt aagaaaaaat catcgtcctg tgatgttact      4200
     aatttaaggc ctatcagttt gttaagctca ctttctaaag catttgaaaa gataattaaa      4260
     tatcagctta ctgaacatgt taataggtat gatcttcttc atccattgca gtctggattt      4320
     agaaaaggtc atagtacaga aactgctttg attaaggtac ataatgatgt agcacgttgt      4380
     attgatagac gaggcgttgc tgttcttctt cttattgact tttctaaagc gtttgatcga      4440
     gtatcccaca ctaagctctt aaacaaattg gccacatcat ttggactttc ccgacctgcc      4500
     gtgttgctaa tcgaatctta tctaagagat cgatctcaat ctgtttttct taatgggttt      4560
     cattcttctt ttgttgatat tctctccggt gttccgcaag gttcagtact cggaccttta      4620
     cttttctcgt tgtttataaa tgatttacct ccagttttaa aattttgttc tgtgcacctc      4680
     tttgctgatg atgtgcaaat ttatctttgt tctgatgcaa atattaacat tgctgatatg      4740
     caaagaaaaa taaatagcga tttactaaaa gtacagagct ggtcagaaaa gaacttgtta      4800
     gcaataaatc ccgcaaaaac taaagcctta ttaataagtc gtctcaaaac acccccaaat      4860
     cctccagagc ttttcctcaa aaacgaactg ctcgaatttg tcgatcatgc ttgtaatctt      4920
     ggcgtcatct ttagaaataa cctagattgg gacaagcaaa ttaattctca aattggaaaa      4980
     atttatggct ctctgaaaca attgagttta actacaagat ttcttaattc acatactaaa      5040
     cttaaactgt ttaaatctct gttataccca cacttcattt ttggtgattt tatatatcct      5100
     aacgcaactg ttgagtccct aaataaactc aaagtggctc taaattcctg tgtcagatat      5160
     gtttacaatt tatctcgata tcaccgagta tcacatttac agaaaaattt aattggctgc      5220
     agtttctctg acttttacaa gtacagatca tgtctcacac tctttagagt aatgcacaca      5280
     ggtgaaccta attatcttag ttccaatata attcctctaa gatcatccag atctaaacaa      5340
     ttcctaatac ctcaacatta ttctacttat tatagtcaat cattattcgt tagaggcatt      5400
     tcaacctgga atctattacc tttaaatatc aaaacaagta tgtctatacc ttatttcaag      5460
     cgcaaactcc tggccgaact caacaacccg aatcagtgat acatttgaga aaatgtgtag      5520
     taaatttgag aaaattagca ttaatttatt taagttaagt gaaattgaat aactccatca      5580
     ctaagtgaat tcccgccaca atgtaatgaa ttaaaaggca cgtgccttat attacatgaa      5640
     taaataaaca aataataata ataataataa taa                                   5673
//
ID   Kiri-3_DEl  repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4146
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4600-4600 (2021).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 4146 BP; 1337 A; 855 C; 743 G; 1209 T; 2 other;
     agtcgaagag agcagacgtc aacaaaacgc tccgtcaagc ttttcatcta agccgtgtaa        60
     acaaaacaac ctataagtca attcgagtga tactgtgttt gtgaaatcag tcgccacgcg       120
     aataacttgc aaccttgcaa ttgacctgtt acctacggca taaaatcaat ttaaaataac       180
     ctggaaacgc ttgggttgtt gtttgtgcaa ctgtttggtg agagaagata tctagttgca       240
     tcttcggagt taatgagagt ttagcgctgc cggattacaa ccaatcgtaa ctgcaagcag       300
     ttcaacacag ataaagcagt gctactgtta accgcctaac tactttacat aaatatgggt       360
     ggacatgtaa aaaaagctaa aatggaagct ggaacttcaa acatttctga actgaaaaga       420
     aaggtccgag aatcagatgt acccacccct tcatcatcaa ctctcatggt cctcattaac       480
     cagcgcttcg atgagcaggc tcttcagatg aaggaatccg agggacgaat caaatcgttt       540
     ctccaagaag aattagccgc agctaatgca ttaatagctg aactaaaaca gcgagttctg       600
     gaccttgaat gtgagatgct ggttgtaaaa gggctgacct ccaagttcga aaacttatcc       660
     agcgaggttg caaacagtct tcagatccaa gccaataacg atgtcgcagg cgatctacga       720
     atacatggta ttccatttgt agataatgag aatcttcgga cccttttgaa cacgctttgt       780
     ttttcacttg gaatcacacc agcctaagga caaaatctat atttagagtt cgaagcaaaa       840
     ttcaaaatgc tgttgtggac cctgttatcc ttgtaaagat ggaaaatatt cgcgacaagg       900
     cgacacttct gcgagggatc ggtgcatatc gtcgtgctta taagcaaccc ctaaatctcc       960
     agcttttggg ctttgaggtt gctacgccgt tctatgtcaa tgagcagctt actcctcaaa      1020
     actactccat tttcaaagaa gcgatgcgtc tcaaaaaact tcggcggcta gcagcagtct      1080
     tttcccgtag gggtctggtg cacattaaac atcaagccgg aggggaagcc atacccgtcg      1140
     aaagtcttca aaaacttatc gatattgctc cacaacagag ttctatctcc aaccagtctg      1200
     atgccgctac tcagcaagac gcagaacctg aaaactcctt tcaactatgc taatgatctt      1260
     taattttttt ttaattagta gtaaatttct agaaattcta ggtgtggtgt gtaggttacg      1320
     ctttatttta tgtggagcgc ttcagtttga gtatgctata ccagttttaa gatgggcgat      1380
     gaacccaact tagaattatc agagactagc agccatgcaa tgattaacat ccttagtaat      1440
     cgccataagg ggcttaaggt atgtcacatc aatgcccaaa gtttaactaa gaaaattgat      1500
     gaatttagaa atatgtttgt tcaatctaat gtggatgtca tttgtgtttc agaaacatgg      1560
     tttgtcccgg gtatgtctga tcttattgtt gagtgttgtg gatataattt attattttag      1620
     atctgatcgt gatggccatg gagggggagt tgcaatttat attcataaaa gactgaacac      1680
     aaagtttatt tgtagccaac aggatggcag cgctattgag tacatattcc ttcaaattac      1740
     aagtgctaaa actgcatcaa aaatcttaat tggctgtctg tacagaccaa atagaactgt      1800
     tccctactct gatgaaattg atctgttggc aaatttaagt ctgcaatacc ctaatataat      1860
     tctagcaggt gatttaaaca gcaacatgtt aatcgagcat cacctctcgg ataacatggc      1920
     agcactagga ctgcaattag ttaactcaag acacgcgacc catttctcga gtaccactga      1980
     aacactattg gacgtatttt ttgttaatga caactccaag atccttttat atgaccaaat      2040
     ttcagttccg gtattctcaa aacatgacct catatttcta acctacaatc ttgacattca      2100
     gtataatgac ctttccatag tttataggga ctttaaaaac atagatatga ccaatctktc      2160
     aactgagttt tattcgtatg attggaactc aatctactcc ctgtccacgg tcgactctca      2220
     gcttgacaaa ttccaatcca aaattgtcca aatttttaac agtttagttc ccttacgtaa      2280
     gaagtccttc atacccaacc agcaatcctg gtttgacgat agaattaata atatcataaa      2340
     gatgagaaac gtggcataca aaaagatgaa agcgatataa aaaaatggac atatcaaagt      2400
     tcatacgtca ataagcaaac ttggtcagtc ttgaaaaccc aggaataggg aggaaaccca      2460
     tcaaccaaca ttgatgttga cagcctcaat aatatcttcg ttaatgtcca agtacctgaa      2520
     tcagtctcta actcgtacct gaacatgact actttggcca actgtgataa taggtttagc      2580
     tttatgtgtg ttactcaatg tgatgtcctt gacgcaatat taaaagtgaa atctaacgcc      2640
     acaggcttgg acgatatcaa tccaaaattt gtaaaaattc tactgcctca gatattacca      2700
     ctaataacac atatatttaa ctctgcaata acattttcaa ccttccctga actatggaaa      2760
     attacgaaac taattccaac acctaaggga attaatgaat ataggcctat agctattctt      2820
     tcatatctct ctaaagcctt tgagcaaata ttggcccggt gtcccttcag aagctgcaca      2880
     acagccataa taaagatttc agaggatatc aggaaaaaac tcgataacag ccaggctaca      2940
     ctcttaacac ttcttgattt tagcaaagcg ttcgatactg ttaaccacgc aattctctgc      3000
     agtaaattga cgaacttatt taattttccg ataccctatt aagcttatat cgtcctacct      3060
     aagtaatcgt catcaatgtg tagtgtcagc gtctatttcg tcttcgtttt tacggactac      3120
     gcgggatgta ccgcagggat ctgttctcca atgtatataa atgatcttct gactgtagtc      3180
     tcccattgta aagtccacat gtatgctgac gatgtgcaat tatacgtagt agttctcttt      3240
     gtcgtattaa tgactgtgtc ggtgcttgta actctgacct tcaaagcatt agtcagtggg      3300
     caagtgctaa tggtctagcc ttaagcccca aaaagtcgaa atgcatgatg atttacaaga      3360
     agaaaattaa aacagagaat ttacaacctg ttcgaattga acacacgaca cttccccatg      3420
     tcgacaagca actacctggg cttcacatca acaataccct aacctggaac gaccacataa      3480
     acagagcagt agggaaaacg taacgacttt taagacaact taatgttagc cagagtatct      3540
     tcctccttaa ataagtctta gtcgcaaaga cctatctgat ccatctctac tgcatggcat      3600
     agaagtttct ggtagttgtg atgctactag ctttagaaaa attaatgtag catttaataa      3660
     catcgcacga tatgtattta agctgagacc ccgtgaccat gtttctgaat acgcaaataa      3720
     aatttataat ttggatttta aatctgtaat aaagcgcaga actctgacaa tgctccacaa      3780
     aattatccac actaggaaac cgtcgtacct gttttctgag ttaagcttta gaactaataa      3840
     tctaattgta agccggacca agttgtccag ttcagaaatc acttttttgt aaattctgct      3900
     cgtctctgga accctcaata aaaagcgccc aaacatacaa atttagccta accgcacact      3960
     ttaccacaaa ctctatctaa cttaactcaa ttttaacgca aatttaaatc tatgttaatt      4020
     ttatattgaa agaattgtaa ttcagaagga atattgtaac tccgtatcat aacggtgact      4080
     ggcacattaa actaagagtt taattactcg tagtgctagg atgcaaaata aataaataaw      4140
     taaaaa                                                                 4146
//
ID   Kiri-3_DK   repbase;    DNA;    INV; 3525 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3525
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1347-1347 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           587..3262
FT                 /product="Kiri-3_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KIEEFRYLFIDSEIDVICISETWFVPNICDVLVECDG
FT                 FNLYRSDRESHGGGVAMYVNKKLKSKFVCKHPACSSVEYLFVEIKYKLQHT
FT                 AKMLIGCAYRPNCRTNYDNITSILADLSTKYADVILAGDFNSDLIRESHLT
FT                 NNMESLGLNVVNTTSPTHFCNTRSSLLDVFFVTNTDKVALYDQLIVPSFSK
FT                 HDLIFLTYAIDLLYHDNTIVFRDFRNINYEHLNETFNCCNWDGLYLLAEVD
FT                 DQVKYFQDNILNLYNSCVPVRRKIIRATEKPWFHNGIRNAINERDKAFKKW
FT                 KRYRTSHEYRKFSLLRQSVTKLIDIAKSSYYSRKFERTSSTQETWKTIKSL
FT                 GIGKSKGRVEQDIDVNELNKQFIKCSVPEVLDNQYLQLAPEIVCDNRFRFV
FT                 TVNQCDILQTILDIKSDATGLDDINPKFIKILLPRILPYLTHILNKALTTS
FT                 TFPDCWKTAKIIPIPKSNTDYRPISILPYLSKILENIMAKQINKFLTDNEM
FT                 LNNNQSGFRKGRSCTTAILKITDDIRKQMDDNNVTFLVLLDYSKAFDTVNH
FT                 NILCSKLRNMFHFSKTSVKLVSSYLNNRRQSVVLSNVSSEFGNVTRGVPQG
FT                 SVLGPLLFTLYANDLPSVLSECNVHLYADDVQMYVSRPLNRISECIDVCIR
FT                 ELARVNEWAIKNGLGINPNKSKCLVISRKKIKLDNIEPLHINNSPLEYVEK
FT                 AVNLGFTFNRTLTWNDHIAKAIGKVFGMLRALSVTKGCLPINVRMLVAKTC
FT                 LVPCLFYGVEVFSNCDSISQNKIKIVYNSIARYIFNLARMEHVSAYAYKIF
FT                 DVELSGWIKMRILTFLHKLIYKKEPAYLFEKLTFTASRRLNNLICIRPRSL
FT                 TSERQFFINAIRLWNQLPNNIKNISNATQFKEKVLSQFK"
FT   CDS           join(2..319,276..626)
FT                 /product="Kiri-3_DK_1p"
FT                 /translation="RNNKTQLSLKLIGLDSPAFIYINEQLTKPKYEIFKRA
FT                 MHLKRIKRLSAVFTRRGEIFVKERVGAEARCLQSFGDLDHLELEMGLGNES
FT                 LTLEVSSVGALQNSSFRAKFQVLELYKIVLFAPKRSLKCIFYLKSLVIFKN
FT                 SRCNRKLIFIVGVFKFRIILDKMLIILKFINITLEDNINQNSQNSRALLRI
FT                 LGKQRSGLKICHINAQSLTKKLKNLGISLSTQK"
XX
SQ   Sequence 3525 BP; 1240 A; 569 C; 633 G; 1083 T; 0 other;
     gcgaaataat aaaacgcaac taagcttaaa gcttataggc ctagactcgc cagcgtttat        60
     ctacataaac gagcagctga cgaaaccgaa atatgaaata ttcaaacgag caatgcatct       120
     caaacggata aagcgcttat cagctgtttt cactcggcga ggggagatat tcgtgaagga       180
     acgagtaggt gcagaggcta ggtgcttgca gagctttggc gatctggatc atctggagtt       240
     ggagatgggg ctcggtaatg agtcccttac tttagaagtt tcaagtgttg gagctttaca       300
     aaatagttct tttcgcgcct aaacgtagtt taaaatgcat tttttattta aaaagtttag       360
     taatatttaa aaacagtcgc tgtaatagga agcttatatt tattgtggga gtctttaaat       420
     ttagaataat tcttgataaa atgctaataa ttttaaaatt tattaatata acattggaag       480
     acaacataaa tcaaaatagt caaaatagcc gcgcgttact gcgcattctt ggaaagcaga       540
     gatctggtct aaaaatctgt catataaatg ctcaaagcct gactaaaaaa ttgaagaatt       600
     taggtatctc tttatcgact cagaaataga tgttatatgt atatctgaaa catggtttgt       660
     cccgaatatt tgtgatgtct tagttgaatg tgacggcttt aacttgtatc gttctgatcg       720
     tgaaagtcat ggtggagggg ttgcaatgta tgtgaacaaa aaattgaagt ccaaatttgt       780
     atgtaaacat cctgcttgta gttctgtgga atatttattt gtagaaatta aatataagtt       840
     acaacacact gcaaaaatgc tgattgggtg cgcctatcgg cctaattgtc ggaccaacta       900
     tgacaacatt acaagtatcc tagctgattt gtcaacaaaa tatgcagatg ttattcttgc       960
     aggtgacttt aatagtgatt taataagaga atcacatctt acaaataata tggagtcgct      1020
     agggttaaat gtagtaaaca ctacttcccc tacgcatttt tgcaacactc gcagctcatt      1080
     actagatgtg ttctttgtga ctaatactga caaagtagct ttatatgacc agctaatcgt      1140
     cccgtctttt tcgaaacatg acctcatctt tctgacatac gcaattgacc ttctatatca      1200
     tgacaatacc atagtcttta gggactttag aaatataaat tatgaacatt taaatgaaac      1260
     ctttaactgc tgtaattggg atggcctata tttactcgca gaagttgacg atcaagtaaa      1320
     gtactttcag gataatatac ttaacttgta taacagctgc gttccggttc gtagaaaaat      1380
     aattcgtgca acggagaaac catggtttca taatggcatt cggaatgcga tcaatgaacg      1440
     cgacaaagct ttcaaaaagt ggaagaggta taggacatca catgaataca ggaaatttag      1500
     tttgctgaga caatctgtaa ctaagctcat tgacattgct aaaagcagct actattcccg      1560
     taaatttgaa agaacatctt ctactcaaga aacatggaaa acaataaaaa gtttgggaat      1620
     aggaaaatcc aaagggaggg tggaacagga catagatgtg aatgaactaa ataaacaatt      1680
     tataaaatgc tcagtacctg aagttcttga caatcaatac ttacaacttg cacctgaaat      1740
     cgtctgtgat aataggttta ggtttgtgac tgttaatcaa tgtgatattc tacagactat      1800
     acttgacatt aagagtgatg cgactggact tgacgacatt aatccgaaat ttatcaaaat      1860
     tttgttacct aggattctgc cttatttaac tcatatatta aataaagcat taacaacctc      1920
     gacttttcct gactgctgga aaacggccaa gattattccg attccaaaat caaatactga      1980
     ctacagacct atatcgatcc tgccgtacct ttctaaaata ttagaaaata taatggcaaa      2040
     acaaataaat aaatttctca ctgacaatga aatgctaaat aataatcagt caggatttag      2100
     gaaaggtcga agctgtacta cagctatatt aaagattact gacgacataa ggaaacaaat      2160
     ggacgataac aatgtcacat ttttagtttt actggactat agcaaggctt ttgacactgt      2220
     aaaccataat attctatgtt caaagttacg taatatgttc catttttcaa aaacttctgt      2280
     taagcttgtg tcttcgtact taaataatcg tcgtcaatca gttgttctat ctaatgtatc      2340
     gtcggaattt ggaaatgtca ctcgtggtgt cccccaaggt tcagtacttg gtccactgtt      2400
     gtttacactg tatgctaatg acctaccatc tgtgttgtca gaatgtaatg tgcatctgta      2460
     tgccgatgat gtccaaatgt atgtgagtcg tcctttaaat agaataagtg aatgtattga      2520
     tgtatgtatc cgtgaacttg ctcgagtaaa tgaatgggca atcaaaaatg gactaggcat      2580
     taacccaaat aaatctaagt gcctcgtaat aagcagaaaa aaaataaagc tagacaatat      2640
     cgaacctctt cacattaata acagtccatt agagtatgtc gaaaaagccg taaatcttgg      2700
     atttacattc aacaggactc ttacatggaa cgatcacatc gcaaaggcaa taggaaaagt      2760
     atttggaatg ctgagagcat tgtctgtgac taagggttgc ctgcctataa atgttcgtat      2820
     gttagtagca aaaacatgtt tagttccgtg tttattttat ggtgtagaag ttttttcaaa      2880
     ttgtgactcg attagccaaa ataaaataaa aatagtatat aatagcatcg caagatatat      2940
     atttaatttg gcacgaatgg aacatgtgtc ggcttatgcc tataaaattt ttgacgtaga      3000
     acttagcgga tggataaaga tgagaatatt gacatttctt cacaaattaa tatataagaa      3060
     agaaccagca tacctatttg aaaaattaac atttactgcg tctagaagac taaacaatct      3120
     aatttgtata aggcccagat ccctgacatc cgagagacaa ttttttatta atgctattag      3180
     attatggaat cagctaccca acaacattaa aaacattagc aatgctacgc aattcaaaga      3240
     aaaggtactc tcacagttta aataagtccc ataaattaaa ttaaattaca gcgacttagg      3300
     aataggatta ggattaagtt aaattaacta caaaatatac taaataataa taataataat      3360
     aaactttaaa ttgttagatt aagaatatca tatgcacaaa ttttgtttag atttaagctt      3420
     tatgacagta tgtattgtaa ccctttgtga ctagcgctct aatttataag ttttacactt      3480
     gtagcgttag gaaggcaaat aaaatcaaat caaatcaaaa tcaaa                      3525
//
ID   Kiri-3_DSuz repbase;    DNA;    INV; 4587 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   17-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4587
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 597-597 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           471..1397
FT                 /product="Kiri-3_DSuz_1p"
FT                 /translation="MGSSAPPTKRTRNNAGTASERISDVNSPQLLELLKTR
FT                 FEEQTEKIESAVREAEQRMLRSLMDRLDKIAGEVKQMDARVLTLEREVADL
FT                 RSMRDRMGERVETLNREVENLQAAGQRLGALEARMATQCRETSSCDLRVHG
FT                 VPYVEGEDLRALYHKLCFNLQLTPPPRVCDIFRARKSQQTHVDPVIIIKML
FT                 NPREKIKLLGQVGMYRREHKKQLSLQFLGFNSEALIYINEQLLKEHYLIFK
FT                 EAMRMKKHKILTAVFTRRGLVHVRCTRREGVCCINSMEELSSINLSPDPLS
FT                 TSLTNASAGPEADSFRS"
FT   CDS           1517..4300
FT                 /product="Kiri-3_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQDEEVCSIASAMIKTISSYKIGLKIVHLNAQSLLKK
FT                 IDEFRFLFTQSNVDVICVSETWFVNDLCDSSIICEGFNVYRSDRTGHAGGV
FT                 AIYVNVKLKCKVVLKQPSDSTIEYILLELPNKSHGRTLLGCIYRPNRTIDY
FT                 GSLLNVVSGISLEYTDIILAGDFNSNLLSESHLLDNFKSLGLFSVNETIPT
FT                 HYSSHCDTLLDLFLINDPSKIIHYDQVSVPAFSRHDLIFLTYDLTFDSKIN
FT                 SFTYRDYKNINYNELKTEFLCCDWSCIYHLRHVDCQLEVLTNNVQYLFNKF
FT                 VPLRTKVIKPMQNPWFSSEIKNLTRQRDVAYLRWKRYKTDEFRKQYKEARV
FT                 KVNKKIKSAKKEHYNIQFNNCVNSKKRWNKLKRLGIGKCKQQTESEVDVEL
FT                 INKKFLEIDVPEATCNPYLNTQPLCDNSFSFICINQSDVLASILHVKSDAV
FT                 GLDNMSPKFVKLLLPLMLPHITYIFNTAITTSSFPLIWKNAKIFPIPKPNN
FT                 DYRPISILPFLSKVFENLMSSQIQLYLANNSLLDEKQSGFRKKRSCITAIT
FT                 NIVEDIRQELDSNCVTFLTLLDHSKAFDSVNHNILCTKLRNMFNFSTNATK
FT                 LIRSYLTNRFQAVVSGTQVSSLRNLSRGVPQGSVLGPLLFSIYVNDLPSIL
FT                 SECEVHLYADDVQIYVSRPVTEIHDCVRISNKMLWLIEKWAKENGLGINPK
FT                 KSKCLVIGKKQLSTLSLQKLYINHTPISYEVNAVNLGITFNNTLSWSNHIV
FT                 KATGRTYALLRKFSFSKSFLTEEVRLLIAKVILLPTLFYGIEIFGNCDVRD
FT                 LRTLTVAFNSVVRYVFNLRRFDHVSELTYKILDLNLTSWIDLRILIFFHKI
FT                 VTSGEPKYLFNKLTPATSVRTKNYICPRIQTLCSRRQFFINGIRLWNNLPH
FT                 QYKTIRSATQFYNKVKDLLKYQYT"
XX
SQ   Sequence 4587 BP; 1570 A; 864 C; 853 G; 1300 T; 0 other;
     agaagccaac tctcccgtgt gcagtcgctt tattgaacgc tctataaaat aaacgatatt        60
     ccacggaaaa taacatttat aaaattgaag aaagtctata actgcctaat ataccaccag       120
     ccctatccgc gaacaacaca acatagtgct aataaacaaa gttgattcta taaatcagaa       180
     aataaattct tgctgaacaa caagtgcggt tgtgcgtgca ccttcagtga gagacaatcg       240
     gtgcggcagc atcttcggag tgcaagagag aaaaaggttg ccccatcagc tacgctattg       300
     ccgataaggc agctattcac tattgtcgat aaggcagttt gtcggtaaag cagtgagtgg       360
     ttgcaagcta agctactact taaacttaaa gattaaatcc gaaagataca atacaaacac       420
     aaccgaccta accttaacca aatcaaacaa taaatacact taaaaaagtc atgggttctt       480
     ctgctccacc tactaaacgt acccgcaaca atgctggaac tgccagcgaa cgcatctcgg       540
     atgtaaattc gcctcagctt ctggagctcc taaagactcg cttcgaggaa caaaccgaga       600
     aaattgagtc ggccgttcgg gaagctgaac agcgaatgct cagaagcctt atggatcgct       660
     tggacaaaat cgccggggaa gtaaaacaaa tggatgctcg tgtcctgacg ttggagcgcg       720
     aggttgccga tcttcgctcc atgagggacc gaatgggtga gcgggttgag acgttgaacc       780
     gggaggtaga aaatctacaa gcagcaggtc agaggttggg tgcactggag gccaggatgg       840
     caacgcaatg cagggagact agctcgtgtg atctgagggt tcatggagtt ccctatgtcg       900
     aaggtgaaga tctcagagcg ctctatcaca agctatgctt taatctccag ctgactccac       960
     caccaagagt ctgcgatatc ttccgagcaa ggaaatcaca gcaaacacat gtggatccgg      1020
     tgataataat taaaatgcta aacccacgcg aaaagatcaa gctgcttggt caagtcggaa      1080
     tgtacaggcg cgagcacaag aaacaactta gcttgcagtt tctgggtttc aattcagaag      1140
     cgttaattta tattaatgag caattgttaa aagagcatta tctcatcttt aaagaggcta      1200
     tgcgcatgaa aaaacataaa atccttacgg ctgtctttac acgacgcggc cttgtgcacg      1260
     tacgctgcac tcgaagagag ggtgtctgtt gcattaacag tatggaggaa ctttcgtcca      1320
     ttaatctttc gcctgatcca ctttctacat ctctcactaa cgcttcggct ggacctgaag      1380
     ctgatagctt tcgttcttaa gcgtataaat tgtatcctct taattaagat aggtttaaaa      1440
     ctagtttact ctaagaaatg tataagatac gcattgaata ttgagattgc gcccctaata      1500
     atcattgata acaacaatgc aggatgagga agtttgttcc atagctagtg ccatgataaa      1560
     aactataagt agttataaaa ttggtctaaa aattgttcac ttaaatgcac aaagtttgct      1620
     aaagaagatt gatgagttta gattcctttt cactcagtct aatgtcgatg tgatatgtgt      1680
     gtctgagacg tggtttgtaa atgatctatg tgattcgtct attatttgtg aaggctttaa      1740
     tgtttatcgg tccgaccgta ctggtcatgc aggaggtgtt gctatatacg tgaatgtgaa      1800
     gctgaaatgt aaagtggtac ttaaacagcc aagtgacagt actatcgaat acattctatt      1860
     agaacttccc aataaatccc atggaagaac ccttctaggt tgcatatata gaccgaatcg      1920
     gacaattgac tacgggtcat tacttaatgt tgtttcaggc atttcgttgg agtacactga      1980
     catcatattg gcaggtgatt ttaacagcaa cctattgtca gaaagccatc tcctagataa      2040
     ctttaagtcc ctaggtttgt tttccgtaaa cgaaacgatt cccacgcact atagcagcca      2100
     ctgtgataca ttacttgact tatttcttat caatgaccct agcaaaatca tacattatga      2160
     ccaggtttct gtaccagcct tctccagaca tgacctaata tttttaacat acgacttgac      2220
     ctttgacagc aaaatcaatt cttttacgta cagagattac aaaaatataa actataatga      2280
     attaaaaacg gaatttttgt gttgtgactg gtcatgtatt taccatcttc gtcatgtaga      2340
     ttgtcaatta gaggttttaa ccaacaatgt ccagtatttg ttcaacaagt ttgtgcccct      2400
     aaggaccaag gtgattaagc caatgcaaaa tccatggttc agtagtgaaa ttaaaaacct      2460
     aacccgtcag cgagatgtag cttacctccg gtggaagcga tacaaaactg atgaatttcg      2520
     aaaacaatac aaagaggcta gggtaaaagt aaacaaaaag ataaaatcag caaagaaaga      2580
     gcattataac atacaattta ataattgtgt taactcaaaa aaaagatgga acaaactaaa      2640
     acggttaggt attggaaagt gtaagcaaca gacagagtct gaggtggatg tcgaattaat      2700
     aaacaaaaag tttttggaaa tagatgtacc tgaagcaaca tgcaatccgt acctgaatac      2760
     tcaacccctc tgtgataata gttttagctt tatatgtata aaccaaagtg atgtcctagc      2820
     tagtattctg catgtcaagt ctgatgctgt tggtctcgat aatatgagtc caaaatttgt      2880
     taagcttttg ctccccttaa tgttgcccca tattacatat atttttaaca cggctattac      2940
     aacgtcttca tttccgttaa tatggaaaaa cgccaaaatt ttcccaattc ctaagccaaa      3000
     caatgactat agacctattt caatattacc ttttctatca aaagtctttg aaaaccttat      3060
     gtcctcacag attcaactat acttagctaa taattctcta cttgacgaaa aacaatcagg      3120
     attccgtaag aaaaggagtt gtattactgc aatcacaaat attgtagagg atataagaca      3180
     agaactggac agtaactgcg taacgttttt gacgctcctt gaccacagca aggcttttga      3240
     ttctgtgaat cataatattc tctgtaccaa gcttaggaat atgtttaatt tctcaactaa      3300
     tgcgacgaag cttattaggt cgtacttaac gaataggttt caagcagtcg tctctggaac      3360
     gcaagtttct tctctccgga acttatccag gggagtgcca cagggatctg tgctaggccc      3420
     tttattgttt tctatatatg tcaatgatct ccctagtatc ctgtctgagt gtgaagtaca      3480
     tttatatgct gatgatgtcc aaatatatgt tagtagaccc gtaactgaaa tacatgactg      3540
     tgtccgtata agtaataaaa tgttgtggct aattgaaaaa tgggcaaagg aaaatggctt      3600
     gggtataaat cctaaaaaat cgaagtgctt ggtaattggt aaaaagcaac tttcaacact      3660
     ttcacttcaa aaattatata taaaccatac gccgataagc tatgaagtga atgcagttaa      3720
     tctaggcata acatttaaca atactttatc atggagcaac catatagtca aagcgacagg      3780
     gcgtacatat gctctgctga gaaaattttc attctccaaa tcgttcttaa ctgaggaagt      3840
     tagactatta atcgccaaag ttatcctcct gcccactctc ttttacggca tagaaatttt      3900
     tggaaattgt gatgtgcggg atttgcgtac attaactgta gcttttaatt cagttgtccg      3960
     ttatgtgttt aacttaagac gttttgacca tgtatcagaa ctgacatata aaatacttga      4020
     ccttaacttg acctcctgga tcgatctcag aattttaatc ttctttcaca aaatagtgac      4080
     gagtggagaa ccaaaatatc ttttcaataa acttacccca gccacatctg taagaaccaa      4140
     aaattacata tgccctcgaa tacaaacact gtgttcgaga aggcaatttt tcataaatgg      4200
     tatccggcta tggaacaatc taccgcacca atacaaaaca attaggagcg caactcaatt      4260
     ttacaataaa gttaaagatc ttttaaaata ccagtacaca taagtataaa aattaaatga      4320
     aaaaaaataa aacaaaaaaa aaaaaataaa ccaaacaaaa ataaaaaaaa taaaaatata      4380
     tatattttaa aaacaataat aattgtaact aagaaactac gaaaatttga tgttagtcaa      4440
     taatattaat taagagcgag agaaattgtt ttaataactt aaaaataata ataatataaa      4500
     atatcaactc aatgtgacta gcgcgataat tataagtgtg cacttgtagc gctaggatat      4560
     aaataaataa ataaataaat aaataaa                                          4587
//
ID   Kiri-3_DTa  repbase;    DNA;    INV; 4563 BP.
XX
AC   .
XX
DT   15-JUN-2012 (Rel. 17.08, Created)
DT   03-AUG-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_DTa.
XX
NM   Kiri-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4563
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1710-1710 (2012).
XX
RN   [2]
RP   1-4563
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-AUG-2021).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
CC   [2]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           317..1306
FT                 /product="Kiri-3_DTa_1p"
FT                 /translation="MSNQQAKRVRTDSSLELRSGKIGRTSDALSPQLLEQI
FT                 DARLSALINARFAELTEHINTTSRETEERLLKALSNEIDQKFDAKLGQLSG
FT                 AVEDLGTRVQQLEVITAERLDKLERDMEELRSLKAKVGTVEGKLKAQNAES
FT                 DACAVRMHGIPYVDGEKLRTLFNKLCFATNLVPAPRVRDIFRARKSQNTLV
FT                 DPPVIVRLETTREKAALLRALGAYRRANNQKLGIHLLGFDSPAVLYVNEQL
FT                 TKDNFVIFKEAMRLKKLKVLSVVFTRRGIVHAKRTGRDDVIYFQQXDELAD
FT                 ITERERVNAAGSLSVSASCSPLAGGTSLDNGTNNNFRD"
FT   CDS           join(1029..1739,1726..4245)
FT                 /product="Kiri-3_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="MSNSRKIISLSLKKLCALKSSKFSLXCLLDVGLCTRN
FT                 AQGEMTLSISSNXMSLPISLRERESMLLGPSLFPPPALRSLGVHLWIMGLI
FT                 IIFATNFSYNPILFLIIVFKSNSSLVRFLIILSYFGLECAYCDLLCVFPIC
FT                 LNVFLMQIVSNNNIASSLLNILCKQREGLRIVHINAQSLVRKMDEFRELFV
FT                 GSHVDVICVSETWFVNGSSDVPFMCEGYVLFRADRVGHAGGVAHLYQPIYI
FT                 SKKFTFKCIHVSQDDSTVESAFIEITDRKCKNKALICCIYRPHRQTHFGDL
FT                 MRTLAVLSVGYQNVIITGDLNSNMITENLVHYDFNSIGLKLVNSLAPTYFT
FT                 NTXSSLLDVFFVSDLSKVLLYDQICVPAFSKHDLIFMTYDFISDNMPSVIS
FT                 YRDYKSLNYDNLQAEFDHYDWTLIYNLTSAEDQLLFLNSNVRQLFEKCVPA
FT                 RTKILKPADQPWFTLEIKGLIRLRDAAYKRWKRYRTDHLYNIFKQIRTDVT
FT                 RKIAVSKRSFYNHKFGNAYTSGQVWKELRGMGIGKQTQAAKSDLDVDALNE
FT                 KFARVNFSSPPQNMYLNSTTICDNIFSFMCVRPSDVLECLLSVKSNAEGLD
FT                 NISPKFIKILVPKLIYHISHIFNTIFTTSTFPDVWKRAKILPIPKPKNEFR
FT                 PISILPFLSKSFERLVAQQIQSYLENNSFLSNKQSGFIKNRSCTTAILKIS
FT                 EDIRQQIDESKVTLLTLLDFSKAFDSIDHVILCTKLRTLYSFSPSAIKLLQ
FT                 TYLTNRLQAVVSGNLRSDLLPLAQGVPQGSVLGPLLFSLYINDLPKCLSDC
FT                 DVHLYADDVQLYVSRPLGQINECIRISNNEIQKISNWAEANGLHLNPSKTK
FT                 CLFIYKRHISPILLPKVNVNNVAVNYVERATNLGIEFNSTLTWDXHITKAT
FT                 GKTYAMLRQLSVTQNLIPQNIRMLVAKACIIPTLFYGLEIFASSDAASLRK
FT                 LKVAFNSIARYIFNLDRTAHVTAYSSKIFELSFESWIKFRTLLFLHKLIFR
FT                 KEPQYLTELLQMSVSARTNNIISKRLKLGSAEKHFFIQTVRHWNNLPNNIK
FT                 NIKNYTKFKTELFSHLQGTL"
XX
SQ   Sequence 4563 BP; 1386 A; 932 C; 867 G; 1373 T; 5 other;
     ctctggcaag cagacgtgtt ttttggagct ccgaaaattc gaacgttttt cgttgaataa        60
     agaattattt attgttctgc ttcggcgcgt tttcctaaca agtgtctcgc aatgtcctcc       120
     gctgttgaaa actcacaaca cgagcagtaa acattataat taatcaattt ctgcaaaatc       180
     aaagctgttt ggccgcccgt gaactcgtcg gttcgtctgc gctctcagct gatctaaaga       240
     aattgagaga accgtatcag caacaacaca aacttttctt tgcaaattac tgttgcacaa       300
     ctcactagac acagacatgt caaaccaaca ggcgaaacga gtgagaactg attcgtctct       360
     ggaattgaga tccgggaaaa ttggtcgcac ttcagatgct ctatcgccgc aactgttgga       420
     gcaaatagac gcccgattat cagcgcttat caacgcccgc ttcgctgagc tgacagagca       480
     catcaacacc acttcgcggg agactgaaga aaggctattg aaagckctat ccaacgaaat       540
     tgaccaaaaa ttcgacgcta agcttggcca actatctggt gctgtggaag accttggaac       600
     gcgagtccag caactagagg tcatcacggc cgagcgcctg gacaaactgg agcgggatat       660
     ggaggagcta cgttccctga aagccaaagt agggactgtc gaagggaaac ttaaggcaca       720
     gaatgctgaa agtgatgcgt gcgcggtacg tatgcatggc attccgtatg tagatgggga       780
     aaaactccgg accctattca acaaactatg ttttgcgacg aaccttgttc cggcaccgag       840
     agtccgcgat atcttcaggg cccgtaaatc ccagaataca cttgtcgatc ctcctgtaat       900
     agttaggctg gagacgacga gggaaaaagc ggcacttcta cgagcacttg gtgcataccg       960
     gcgagctaac aaccaaaaac tgggcataca cctgctaggt ttcgattcac cggctgtgct      1020
     ctacgttaat gagcaactca cgaaagataa tttcgttatc tttaaagaag ctatgcgcct      1080
     taaaaagctc aaagttctct ctgtkgtgtt tactcgacgt gggattgtgc acgcgaaacg      1140
     cacagggaga gatgacgtta tctatttcca gcaattwgat gagcttgccg atatcactga      1200
     gagagagaga gtcaatgctg ctgggtccct ctctgtttcc gcctcctgct ctccgctcgc      1260
     tgggggtaca tctctggata atgggactaa taataatttt cgcgactaat ttctcttata      1320
     atcctatact ttttctcata atagttttta agagtaactc aagtttagtt aggtttttga      1380
     taatactatc ttatttcgga ttagagtgtg cctattgcga ccttttgtgt gtgtttccaa      1440
     tatgtttaaa tgtcttccta atgcagatcg tttcaaataa taatattgcg agcagtctct      1500
     taaatattct atgtaaacaa agagagggtc ttaggattgt ccacataaac gcccagagcc      1560
     tagtaagaaa aatggatgag tttagagaat tatttgttgg atctcatgtt gatgtaattt      1620
     gtgtgtcaga aacctggttt gtcaatggtt ctagtgatgt cccgtttatg tgtgagggtt      1680
     acgtgttgtt tagggctgat cgggtgggcc atgccggtgg cgtagcccat ctatatcagt      1740
     aagaaattta cctttaaatg tatccatgtc agtcaagatg atagtacagt agaatcagct      1800
     ttcattgaga ttactgatcg aaaatgcaag aataaagctc tcatctgctg catatacaga      1860
     ccccaccgcc aaacccattt cggagacctt atgagaacgc tggcagtcct atccgttggg      1920
     tatcaaaatg ttattataac aggagatctc aacagcaata tgataaccga aaatcttgtt      1980
     cactatgact ttaattcaat tggattgaaa ttggtcaaca gtctcgcacc tacctatttt      2040
     acaaatactw gtagctcatt gttagatgta ttctttgtta gtgatttgtc aaaagttctt      2100
     ttatatgacc aaatatgtgt tcctgctttt tccaaacatg acctgatatt tatgacgtat      2160
     gattttatct ctgacaacat gccatctgta attagctata gggattataa gtcacttaat      2220
     tacgacaact tgcaggctga atttgatcat tatgactgga ctctcattta caacttgaca      2280
     tctgctgaag accaactatt atttttaaac tctaatgtta gacaactatt tgagaagtgt      2340
     gtcccagcta gaactaaaat tctaaagcca gcagaccagc cttggtttac cttagaaata      2400
     aagggtctaa ttcgattgcg ggacgcagcc tataagcgct ggaaacgata tcgaactgac      2460
     catttgtaca atatttttaa acagatcaga actgatgtca cgagaaagat agcagtctcc      2520
     aaacgaagtt tttataacca taaatttgga aatgcatata cgtctggtca ggtttggaag      2580
     gagcttagag gtatggggat aggcaaacaa actcaggctg ctaagtcaga cctagatgtg      2640
     gatgctctca atgaaaagtt tgctcgcgtc aatttttcta gtcctcctca aaatatgtac      2700
     ctgaattcga caaccatctg tgataatatc tttagcttta tgtgtgttcg tccaagtgat      2760
     gttcttgaat gtttactaag tgttaaatcc aatgcagaag gtctggacaa catcagcccc      2820
     aaattcataa aaatattggt accaaagtta atttatcaca tctcccatat ctttaatacc      2880
     atattcacca cttctacgtt ccccgatgtg tggaaaaggg ctaagatact cccgattcct      2940
     aaacctaaaa atgaatttcg tcccatctca atactcccat ttctgtccaa gtcatttgaa      3000
     cgcctggttg cccagcaaat tcagtcatac ctggaaaata actctttcct cagcaacaag      3060
     caatctgggt tcataaagaa tagaagctgt actactgcca tcttgaagat ttctgaagac      3120
     atacgccagc agattgacga aagtaaagtg acactattaa cccttcttga ctttagcaaa      3180
     gcttttgact ctattgacca tgtgattctt tgtaccaaac tgcgaacgct gtatagtttt      3240
     tctccaagtg caataaagct tctccaaacc taccttacaa acagattgca ggcagtcgtc      3300
     tcgggaaatc tcagatctga tctcttgccc ctagcacagg gggtcccaca agggtcagtc      3360
     ttaggcccat tgctcttctc cttatacata aatgatcttc ctaaatgttt gtctgactgt      3420
     gatgtacacc tttatgcaga tgatgtccag ctttatgtaa gtcgtccctt aggccaaatt      3480
     aatgaatgta ttagaattag caacaatgaa atccaaaaaa taagtaattg ggcggaggcg      3540
     aacgggctgc atctaaatcc cagtaaaaca aaatgcctat tcatatacaa aagacatata      3600
     agcccaattt tgcttccaaa agtcaatgtt aacaacgtag ctgttaatta tgtcgaaagg      3660
     gccacaaatc ttggcataga atttaactcc acgttgacat gggatgwcca tattactaag      3720
     gccactggga aaacctatgc tatgctcagg cagctttctg taacccagaa tcttatacct      3780
     cagaacataa gaatgttagt agctaaagct tgcattatac caactctatt ttacggactt      3840
     gaaatttttg catcctctga cgcagcaagt ttgcgtaagc tgaaagttgc gtttaactca      3900
     atagcgcgat atatttttaa cttggatcgc acagcgcatg taacagctta ctcctcaaag      3960
     attttcgagc taagttttga gtcctggatt aagtttagaa ctcttttatt tttacataag      4020
     ttgattttca ggaaggaacc acagtaccta actgaactct tgcaaatgtc agtatctgct      4080
     agaacaaata atattatttc caaacgatta aaacttggat cggcagaaaa gcatttcttt      4140
     atccaaactg ttcgccactg gaacaatctt ccaaataata taaaaaacat taaaaattat      4200
     acaaaattca aaactgaatt attttcccac cttcaaggca cactctaatt ttaactttaa      4260
     ttttatctat aattattttt cttttttgtt actaacttta actttaattt ataatttctg      4320
     aaaatccaca attcttgtac gtctaatttt ttgtttttca aatgactacc ctatattttg      4380
     aattgtaata aaaatgtttt ttcttatgtt tgtttgtttt taagatttta taatgttagt      4440
     aagtaagaca aaatgtaaat gtaatgtaaa aatattgtac ccgtagtgac tggtgccata      4500
     actaaaaggc ttcacttagc ctgtagcact gggataaaac caaaataaat taaattaaaa      4560
     aaa                                                                    4563
//
ID   Kiri-3_HMM  repbase;    DNA;    INV; 4670 BP.
XX
AC   .
XX
DT   14-FEB-2013 (Rel. 19.10, Created)
DT   14-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4670
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2806-2806 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..855
FT                 /product="Kiri-3_HMM_1p"
FT                 /translation="MVTPVDQLLKSMEELSSMFSTRMGEFEKNLSQPGPAA
FT                 AATTIKALSTEFHSFKAFVWKTLNLLKSQVELVVLGMDRLETQSRRKVLLM
FT                 HGVKEDKDENVMHKIIEVLSGQMKLSDVRPAAIESCHRLGAKKDSPRPILV
FT                 XFTSLQVRSNVWRAKTSLKGSKMTITEFLTKSRQEVFIAARKHFGINKCWS
FT                 ADGMIIILMPNKAKSKISSLSELKQLMHRCSDMKSADDN"
FT   CDS           1287..4226
FT                 /product="Kiri-3_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFIDDEYFSCSNSDYDSAESQNHSSLSDSEPLVDKLS
FT                 KTFNNPSNTFSLVHINAQSIPAHYSDLLASFSSGIVDCICISETWLNPSLS
FT                 SVSYSIPGYQLFRNDRTLQGGGGVGIYLRNNITARIIACSPNQSTGTLEYI
FT                 FVEVTLNHKKILLGTLYSPNDKINYFSALEGVLEYLSPQYEHVICTGDLNT
FT                 CLLKNDTRSNLLKTLYDTYNLHILPMACPTHYFPNCRPSLIDLISVSNPNL
FT                 VVSHGQMTAPFSFHDLIFLTYKFRPPKVRGKILLQRNFKHMDLERLREDVR
FT                 NIDWSPIMSSTNIDSMVNSLTTELIRIYDKHAPVRPVRMKHAPAPWLTPII
FT                 KRTMCKRDRAKTRNKKYPCQQNLAAYKKLRNICNRMCRDAKRRYIHTTIQN
FT                 LSQAQVWRFLESFGVGNTKHTHSVSLDLHDLNSSFTTPLLNLSPSTKSETL
FT                 SFLSSTVLPDSTSFSLKTVTEVEVKKCIKSISTKSFGSDCISLDMILPVLE
FT                 YIAPVVTHIINFSLTCNVFPAQWKYAYVIPLPKISNPSSVTDYRPISILPI
FT                 LSKVLESLVNNQLYSFLSFNNLLCPYQSGFRSSHSTVSALLNITEDIRCAM
FT                 DNTKLTVMVLLDFSSAFNCVDFDILLGSLRAVNVSSEALSWFRSYLLGRQQ
FT                 CVKSNDVTSTWLDITCGVPQGGVLSPLLFSVFINNISRVISSPYHLYADDL
FT                 QLYRHCYVSDLPGTIAALNNDLAAIFTWAESVGLLVNPSKSQAIIIGSSKL
FT                 RQKINWNSMPKILYSGVVIEYCNRVKNLGLIFDSNMSWVPHINDVSKRMHF
FT                 SFRSLKRLQYYLPHKTKIMLAQSLLLPILDYADVCYLDVTEELLNKLERLQ
FT                 NLAIRFVYGLRKYDHVSEFRTQLKWLPIRLRRDMHVLSLLFKILNYQNFPC
FT                 YLRSRFDVLPIPTRSRRSGVIPTLNVPKSNTKFLQKSFSVYAASLWNQLPK
FT                 TIQKSPSIKSFKSQLKLHLLASLDN"
XX
SQ   Sequence 4670 BP; 1298 A; 963 C; 755 G; 1649 T; 5 other;
     tcttttcgcg ggtagacgca gaagtgacta gacgtatttt tattgctcct aattttwctt        60
     attaactaaa atagtawtaa gtgtgcatat gtgttaatag tttgatacgt gtgttaagtt       120
     gaacattact aaactttctc acaaactttc tacactaaat aagtaacaat ggtgacacca       180
     gtggaccagc ttctcaagag tatggaggaa ctctcctcta tgttttctac acgaatgggc       240
     gagtttgaaa aaaacttgtc tcagccgggt cctgcagcag ccgctaccac cataaaggct       300
     ttatctacag aatttcactc cttcaaggct tttgtttgga agacactgaa tttactaaaa       360
     tcacaggtgg aacttgttgt gcttggtatg gaccgcctgg agacacagtc cagacgaaaa       420
     gttcttctta tgcatggtgt aaaggaggac aaggatgaaa acgtgatgca taaaataatt       480
     gaagtgttat ccggccaaat gaaattgtct gacgtgaggc ctgcagctat tgaatcttgt       540
     caccgactgg gcgctaaaaa agactctcct cgtcccatcc tcgttagwtt tactagtttg       600
     caagtccgct ccaacgtgtg gagggctaaa acatcwttga agggttctaa aatgacaatt       660
     accgaatttc taacaaaatc acgccaagag gtatttatag cagctcgtaa gcattttgga       720
     atcaataaat gttggtcggc tgatggcatg attattatat taatgccaaa taaagctaaa       780
     agtaagattt cttctctatc tgaactaaaa cagttaatgc atcgatgttc tgatatgaaa       840
     tcagctgacg acaattaaac tggctggatg tgatttgctt ataccaacgt aatttcctcg       900
     gtttatactt aattgctgat gcaataacat attttgttac atatttatat tttttttatt       960
     ttgtagggta cattcatgtt ctcgtaagat tcaatcttaa cacgtaataa ttttgttttt      1020
     ttttgttctg taccatatgt aagtttattt ttgattgttg gtattttttt attatgtccc      1080
     attgtgtttt tttttaatag ttgtaaatgt aaaatgataa aattatgtta ttttttttct      1140
     tagtgttaat tttgtattca gtcaacttgt gcacatggat caaatttaat tttaattttt      1200
     gtgttatctt ttttttttat tattatttta tttttttatt ataatatttg tgccatatat      1260
     atatatattt attatatacc taaattatgt tcattgatga tgaatacttt tcttgctcta      1320
     acagtgatta tgacagcgct gaaagtcaaa atcactcttc actttctgat tccgaaccac      1380
     ttgtagataa attgtctaag accttcaaca acccgtctaa tactttttcc ttggtgcata      1440
     tcaacgctca gagcattcct gctcactact cagatcttct cgcatccttt agctccggca      1500
     tagtcgattg tatttgtata tctgagacct ggttaaaccc ttctctttcc tctgttagtt      1560
     acagtatccc aggttatcag ctgtttcgca atgatcgtac tttgcaaggt ggcggtgggg      1620
     tcggtatcta ccttcgcaac aacattactg ctcgtattat tgcctgctcc cccaatcaat      1680
     cgacaggaac cctagaatat atttttgtgg aagtaacgtt aaaccataaa aaaattcttt      1740
     tagggacttt atactcccca aatgataaaa tcaactattt tagtgcttta gaaggtgttc      1800
     tggaatatct ttcacctcaa tacgagcatg taatctgtac gggcgattta aacacttgtc      1860
     tgttaaaaaa tgatacaaga tctaatttat taaaaacatt atatgatacc tacaacttac      1920
     acattcttcc gatggcgtgt cccacccatt actttcctaa ctgtagaccc tctcttattg      1980
     acctcatctc tgtctctaac cctaatctcg ttgtttctca tgggcaaatg acagctccat      2040
     tctcttttca tgatttaatt ttccttacgt ataaattccg tcctcccaag gttagaggta      2100
     aaatacttct ccaacgcaat tttaagcata tggaccttga acgcttaagg gaggatgtga      2160
     gaaacatcga ctggtcaccc ataatgtcat caacaaatat tgacagtatg gtaaactctt      2220
     taactactga actgattcgc atttacgaca aacatgcccc tgtgagaccg gttcgtatga      2280
     agcatgcgcc tgctccctgg ctaacaccta ttattaaaag aacgatgtgt aaacgtgata      2340
     gagctaaaac tagaaataaa aaatatcctt gccaacaaaa cctagctgca tacaaaaaat      2400
     tgcgaaacat ttgcaacaga atgtgtaggg atgctaaacg ccgatacatt cacaccacta      2460
     ttcagaatct cagtcaagcg caagtttgga gattcttaga gtcgttcggg gtaggcaaca      2520
     ccaagcatac tcattcggta tcattggatc ttcatgattt aaattcatct tttactacac      2580
     ccctattaaa tttaagccct tcaactaaat ctgaaacact gtcattttta tcttctactg      2640
     tcctacctga ctctacatct ttctctctta aaactgtaac tgaagttgaa gtcaagaagt      2700
     gtatcaagtc catatccact aaatcctttg gaagtgactg tatcagcctk gacatgatcc      2760
     ttcctgtgtt ggaatacatt gctccagtgg tcacccacat tattaatttc tcactgactt      2820
     gtaatgtttt tcccgcacaa tggaagtatg cttatgtcat tcctttacca aaaatctcca      2880
     atccctctag cgtcaccgat tatcgtccta tatctatcct tccaatccta tccaaagtcc      2940
     tggaatcctt agtaaataat cagctgtatt ctttcctttc ctttaacaac ctactgtgtc      3000
     cttaccaatc cggtttccga tcctctcaca gcacggttag tgcgttgctg aatatcacgg      3060
     aggacattcg atgtgctatg gataacacca agctcactgt aatggtactg ctggatttca      3120
     gcagcgcttt taactgtgtt gattttgata tacttctggg ctctcttcgt gcagttaacg      3180
     tctcttctga agccttaagc tggtttcgct cctatctctt aggtcgtcag caatgtgtaa      3240
     aatctaatga tgtcacatcg acgtggttag atatcacttg tggcgttcct caaggcggtg      3300
     ttctttctcc acttctattt tctgttttta taaacaatat atctagagtc atttcttctc      3360
     cctaccatct gtatgcggat gacttgcaat tataccggca ttgctatgtt agcgatttgc      3420
     ctgggactat tgcagcttta aataatgatc tcgctgctat ttttacttgg gccgaatctg      3480
     tcggactgtt agtaaatcca agtaagtcac aagcaattat cattggaagc agcaaactta      3540
     gacaaaaaat aaattggaac tcaatgccga agatcctgta ttcaggagta gtaatcgaat      3600
     attgtaacag agtaaaaaat ctgggcctaa tttttgacag taacatgtcc tgggtaccgc      3660
     acattaatga tgtcagcaag cgcatgcatt tctcctttcg ttctcttaag cgtctccaat      3720
     actacctacc tcataaaacc aaaattatgc ttgcacaatc tcttctctta cctatcctcg      3780
     actacgctga tgtatgttat ttggatgtga ccgaggagct gcttaacaaa ttagagcgac      3840
     tccaaaatct tgccatacgc tttgtttacg gtttgcgtaa gtatgaccac gtctccgaat      3900
     ttcgaactca gctcaaatgg ctcccaattc gacttcgccg agatatgcac gtcctgtcac      3960
     tcctttttaa gatccttaac taccagaatt ttccttgtta tcttcgatcc cgctttgacg      4020
     ttctccctat ccctacacgc tcaaggaggt ctggtgtcat accgacactt aacgtaccta      4080
     agagcaacac caaattcctt cagaaatcct tctctgtata cgccgcatcc ctttggaacc      4140
     aactccctaa aactatccag aaaagccctt ccataaagtc cttcaaatcc caattaaaac      4200
     tacatctcct tgcatcgtta gacaattaat ctttttttta tatagtggtt acttatatta      4260
     tctctcctca tcttatatag tgaagcttaa ttttcttttt gttccttttt atataggtat      4320
     atatacttta tgtatttatt atatagtata tatgtattta tatttagatg ttataatata      4380
     ttatttattt tgtataacta tatttatgtt tatttatgtg tatgtcatgc ctaattatta      4440
     ttattatttt tttgtattta ttattactat tagttttatt ttattgttta tcttgttttt      4500
     gtctttctca atttccatgc actatcttgt ctttcccgct actttgcact tatccacttc      4560
     cacgggttga ctggaagaga tctcttctag agataagtcc accgttgtgt atgtcttttc      4620
     ttaatgtgtg ttttattctg tgttaattta gtgcaataaa gaatcttata                 4670
//
ID   Kiri-3_LMi  repbase;    DNA;    INV; 3768 BP.
XX
AC   .
XX
DT   22-APR-2014 (Rel. 19.11, Created)
DT   22-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3768
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3157-3157 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(928..1080,1010..1207,1201..1422,1403..1651,
FT                 1632..1766,1819..3267,3201..3404,3417..3671)
FT                 /product="Kiri-3_LMi_1p"
FT                 /translation="MGDTNIDLQLKYPSAEKLRRLFHSNDMSINTARSTHQ
FT                 TPHIRRYNSNKATRALIPLDPPIKRHTFVDIIATKRPDKIIRASQTSALGL
FT                 SAHDVIFLNYSSDYQRKISPSNLQKPKKSKKLTRRSSKGLLRHPLADISNE
FT                 PTLDGKVRELCRRIIALYDKHAPKRSVKVKRAPAPWLTTELRQLMNKRDAA
FT                 HINAMLHIXPSSITQFLSCMKLTGNFETEPSVRNAKSDMHALSYAAYQSCC
FT                 TVEKLRSFGIGKRKSDAVFKPLQTNLTISSQQLRFLLNSCKLSSSTNYQPQ
FT                 DITLSTDKFFLKHVSTDTVCKAIIEFFYYCSVLTDIFNLSLVSSTYPTEWK
FT                 QSLIQPIPKTDNPMSPGDYRPISILPAMSKALEYIVHEQLTDYLKTYNIHD
FT                 KYQSGFRKHHSTATALIKVTDDIKHAMDRREATILTLLDFSKAFDTVDFDI
FT                 LLIKMKQLNFSNSAIQWFDSYLKNRSQQVICGSEKSSWKNVCSGVPQGSVL
FT                 GPLLFSLYINDISSVIHSCNYHLYADDIQLYISASPKNIDDAVAGMNADLC
FT                 SVSRWAQNLGLKLNPNKSQVILISHPKLISRYFRQTVPGIHLNGTQLPYQK
FT                 TVKDLGIILDEHLNWEEQTVVACRKSLSSLYSIQKFRKIFPTQVKQKLVQT
FT                 LVLPNLYYCDVVQHGTNSENSRRLELVMNACVRYVCNIRLYDHISPSYTQL
FT                 GWMRPHKWRDFQTLCLLHRFLSHQCPQYLSSHIKQLSSFHNRNTRSDTSSI
FT                 LAVPSHNTKSFSVSFSISAIRLWNTLPCDLRLTLNHSTFKRKLKIHILTTA
FT                 STSYTKPLDIQEETQNSHINDGIASIVTLLSVLSLHHSFESYHSISLPLTN
FT                 LPLLYLSHHILSSYVSALTICKNITRQFLNCNRAEVHNMKHAYCTLQSHYY
FT                 YFIIIIIIIVIIIIFDSYKLSKYYCYNYILLIICNFFYFNTCIIHCLSIMY
FT                 "
XX
SQ   Sequence 3768 BP; 1129 A; 930 C; 636 G; 1069 T; 4 other;
     aagtactcgt ctatattcat atgtcagtcc aacagaactg acaatctcta ttaacaggaa        60
     tatcgccttc ctatacctat aatttctcat ctgcatcact accaccaccc tattatttac       120
     attctgtcac cactactgcc actcttcagt ctttatcttc actgcaactt ttctaatcgt       180
     aaattaataa tatttgtttt agcaagctac cactggcagc tcccttagtc atatcctcct       240
     taaataaatc tctctattgt cgtctaaaac agataggcgt atacagatca cacatctttg       300
     agattcgttt ccttctcaaa cacttcgctc gtttttctga cacttctagt ctgcttttca       360
     tcctcagccc gcagacgatc gagtaagccg cgaccttggt cacccctgca agaatgacgt       420
     cttctgcgaa ttccggcccc tgtccgtctt cckgccagca ggtaaacggc gcgcctcggt       480
     cctccgggcg gcacaatggg acagactgct tctggcgggg cctctttgtg gcccatgcga       540
     atgtgcagtc gttagcggca cacttcgacg agttctacga cctgttctct cagtcgctgt       600
     tcccattctt gtctctgaaa cttggctcaa accaaacatc tcctccgaca ctgtccgsat       660
     cactggttac tctctcctaa gagcggatcg tgaaacacgt cgcgggggtg gtgtgggtgc       720
     ctatgttcgc tctgatctga aacctaatac actatgcaca tcagatgcaa atggcgaaag       780
     agaagcagag ttcttacttt tcgaaataaa tacttccaat cagaaactgc taattgagta       840
     atctataaac caccaaacgt cggcgctcta tcctcctttc agtcagcccw ttcatcactc       900
     gtgtcacagt acgaacatac aattgttatg ggtgacacaa atatcgactt acagttaaaa       960
     tatccctctg cagagaaact aagaagactg tttcactcca atgatatgag cattaatacc      1020
     gctcgatcca cccatcaaac gccacacatt cgtagatata atagcaacaa agcgaccaga      1080
     taaaataatt cgcgccagtc agacgtctgc tctgggactc tctgctcatg acgtgatatt      1140
     cttaaattac tcatcagact accagagaaa aatctcacct agtaacctac agaaacctaa      1200
     aaaaagttaa ccagacgctc ttcaaaagga ttgctcagac atcccctggc tgatataagc      1260
     aatgaaccga cattagacgg taaagttcgt gaattatgtc gcagaattat tgcactgtat      1320
     gacaaacatg cccctaaacg ctctgtcaag gtaaagagag ctcccgctcc gtggctcacc      1380
     actgaattac ggcagttaat gaataaacgc gatgctgcac attgascctt caagcataac      1440
     ccaattcctg agctgtatga agcttacagg aaacttcgaa acagagccaa gtgtgaggaa      1500
     tgccaaatca gacatgcacg ctctgtcgta tgcggcatat caatcctgct gcactgtgga      1560
     aaagctgcgc agtttcggca tagggaagcg aaaatctgac gctgttttca agcctctgca      1620
     gacgaattta acgatttctt ctcaacagct gtaaactgtc aagtagcacg aattaccagc      1680
     cccaggatat cactctctca acagacaagt tcttcctaaa acacgtctct acagacacag      1740
     tatgcaaggc aattatagaa ttcttctgag gcagtaggaa atgacgagta agcataggca      1800
     tgattaaaac gttgttgata ctattgttca gttctcacag acatcttcaa cctctctctc      1860
     gtcagtagta catatcccac tgagtggaag caaagtttaa ttcaacccat acccaagact      1920
     gataacccaa tgtcgccagg tgactacagg ccgatcagca tattacctgc aatgtctaaa      1980
     gccttagaat atattgttca cgaacagctg acggattacc tcaaaactta taatatccat      2040
     gataaatatc aatcaggctt ccgaaagcac cacagtacag caactgcgtt aatcaaagta      2100
     accgacgaca ttaaacatgc tatggacaga cgtgaagcta ctatcttaac actgcttgac      2160
     tttagtaagg cttttgatac ggttgacttt gatatattac taattaaaat gaaacagctg      2220
     aatttctcaa acagcgcaat acaatggttc gacagctacc tcaaaaacag aagtcaacaa      2280
     gtcatttgtg ggtcggagaa gtcatcatgg aaaaacgtgt gctctggagt tccccaaggc      2340
     tccgtccttg gtccattact cttttcactg tatatcaatg atatttcttc agtgattcac      2400
     tcctgcaact accatctata tgccgacgac atccaactgt acataagtgc cagccctaag      2460
     aacatcgatg atgcagtagc tggtatgaat gcagaccttt gctctgtttc acgatgggca      2520
     caaaacctag gtcttaagtt aaaccccaat aaatcccagg tcatcctcat atctcaccca      2580
     aagctaatca gccggtattt tcgtcagaca gtccctggaa tacacctcaa tggtacccaa      2640
     ttaccatatc aaaaaacagt gaaagacctt gggataatct tggatgaaca cctaaactgg      2700
     gaagaacaaa cagttgtagc gtgcaggaaa tcgctctcat ccctatattc aatccaaaaa      2760
     tttagaaaaa tatttccaac ccaagttaaa caaaaattag tccaaacact tgtcttgcca      2820
     aatctttact actgtgatgt agttcaacac ggcacaaata gtgaaaattc gagacgcctc      2880
     gagctagtga tgaatgcttg cgttaggtac gtgtgcaata tacggttgta cgatcatatc      2940
     agtccttcat atacccagct aggttggatg cgcccacata agtggcgcga ttttcaaacg      3000
     ctgtgcttac ttcatcgatt tctcagccac cagtgccccc aatacttatc ttctcacatt      3060
     aaacagctat catcattcca caaccgcaat accagatcgg atacgtctag catcttggct      3120
     gtaccttcac acaacactaa atctttctcc gtgtcgttct ccatctcagc catacgacta      3180
     tggaacacac tgccatgtga tctacgtctt acactaaacc actcgacatt caagaggaaa      3240
     ctcaaaattc acatattaac gacggcatag cctccattgt taccctgctc tcagttcttt      3300
     ctctccatca tagctttgaa tcttaccatt ctatttctct tcctctaacc aatctacctc      3360
     ttctatatct ctctcaccac attctatcgt cttatgtctc tgcttgatgt gaataactca      3420
     caatctgtaa gaacataacg aggcaattcc taaattgtaa tagggctgaa gttcacaata      3480
     tgaaacatgc ttactgtact ttgcaaagtc attattatta ttttattatt attattatta      3540
     ttattgttat tattataatt tttgattctt ataaattatc taagtattat tgttacaatt      3600
     atattctatt aataatctgt aatttttttt actttaatac ttgtattata cattgtctgt      3660
     ctataatgta ctaaagaaat tgttcacctt cagtaagcct ggttaggtgt aagagagggc      3720
     ctgaaggccc taatcttgcc aggtaaaata aatgcataaa taaataaa                   3768
//
ID   Kiri-3_PPo  repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-951
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3118-3118 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..453
FT                 /product="Kiri-3_PPo_1p"
FT                 /translation="XYCDVVFGPRLFLKTQRAIQRVQNACLRFCYDIPRRE
FT                 HVTPYYNKYCILKMSGRRDLHFANMVHKIIKSHRPRYLFDKLRWKKDTVTH
FT                 VTRTTMQNKLSIPKHSTVGFRGGFKYAASKVWNDLPPPINQISSHPVFAKK
FT                 CKKILLESQINP"
XX
SQ   Sequence 951 BP; 266 A; 158 C; 154 G; 372 T; 1 other;
     aawtactgtg acgtggtgtt cggtccccgc ttatttttaa agacacagcg ggccattcaa        60
     cgtgtgcaga acgcatgctt acgattttgt tatgatatac cacgtcggga acatgtcact       120
     ccgtattata ataaatactg catattaaaa atgtccggtc gtcgtgatct gcactttgct       180
     aatatggttc ataagattat taagtcccat cgcccgagat atctttttga caaattaagg       240
     tggaagaaag acactgtgac tcatgtaaca agaactacta tgcaaaataa gttgagcatt       300
     ccaaaacata gtacagtcgg ctttagaggt ggatttaagt acgcggcttc caaagtctgg       360
     aacgatctcc caccacctat aaatcaaatt tcgtcacatc cagtgtttgc taaaaaatgt       420
     aaaaaaatat tattagagtc ccaaattaac ccataacaca ttgtgttttt ttttttttgt       480
     taaaaatttg taaagatgtt tataaatgca gtatgttcat tcgcctttta atttagtatg       540
     attgtttttg tttgtttcta ttaagattta aaaaattttt ttttctttat gatgtcccat       600
     ttttgtttga tgtgattttt ttttctttta tttaaaagtg tgttttttat tttattattt       660
     tttttttatt tctgtataga tatgtaatta gtacggccgg ttaccctagt gattaagatg       720
     tatgttactt gagtgcgaag gagccagctg aaaatcagcg caggaacggc ttagtccgtc       780
     ctgcatacgc tgagctggct accttttgcc acgaatatgt cacctttaga ataagtcttt       840
     gttatataat ttctattttg tggcaataaa tacattttca tttcatttca tttcatttca       900
     tttcatttca tttcatttca tttcatttca tttcatttca tttcatttca t                951
//
ID   Kiri-4_AAe  repbase;    DNA;    INV; 4392 BP.
XX
AC   .
XX
DT   21-OCT-2010 (Rel. 15.10, Created)
DT   06-JAN-2011 (Rel. 16.02, Last updated, Version 3)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2_Ele6;
KW   Kiri-4_AAe.
XX
NM   Kiritsubo-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4392
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4392
RA   Kojima K.K. and Jurka J.;
RT   "A distinct group of non-LTR retrotransposons from the yellow
RT   fever mosquito.";
RL   Direct Submission to Repbase Update (21-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele6.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 23 sequences with >93% identity, and ~100%
CC   identical to the original sequence in [1]. This family does not
CC   belong to the L2 clade and is renamed as Kiri. It could
CC   constitute a new clade with other Kiri elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1128
FT                 /product="Kiri-4_AAe_1p"
FT                 /translation="MSQLWLRSRTAEMSKLDSKRKEIVHGSSPSNEISNNE
FT                 LARLITNQGKTMQDQVNKLGNDLRAEFSKGMDEIKADLVEVNSKLCCMRQD
FT                 VFDNANAIARSNLSNDLIISGVPFTENEDLLHYFRCWCKTMGYADGNVPYV
FT                 DIRRLSRTPLNAGNIYFILVQFAITNQRNDFFSCYLRNQSLNLNQIGFQTN
FT                 KRVYVNENLTPTARKIKSKAIELRKAGKLAKVFSRAGEIFVRSKEIDQDVI
FT                 IKSEEDLRRFEHLGG"
FT   CDS           1443..4274
FT                 /product="Kiri-4_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANVRREYTSTDWSVQGIVMKSAFISNKLSICCMNAQ
FT                 SICARRMSKVVELRQIAKVSNVDVICITESWLNINVSSDVLDIEGYTIVRN
FT                 DRVGRLGGGILVYLKKNINFKIIEASSNDIGTPETEFIFVEISIDHRKVLM
FT                 GFFYNPPELDCSQVIHDKLTCLKYQYDHIYLMGDFNTNIINTLSEKVKRFC
FT                 ATLQCLSLSSLGRIPTHFHRTGASLIDMIITNDTGSVLRFNQIEVPFLSNH
FT                 DLLFASLDFDLLPNNNTRTFRDYSRINSSKVIELYNRIEWNEFYSIDNPDY
FT                 LVPFFNNHIENIFDSCVPLKTVHNHPRSNPWFNQDISKAMIDRDLAYRVWK
FT                 VSKCDTDYSLYKSLRNKVTALINTAKKEYWNTKVSNASTSKELWKYFGQMN
FT                 VNSKKTNGDTRFSPDEINVHFSNCYSTSNDVVANNPSLVDSFFSFSAIELN
FT                 QIINATYEIKSNAVGLDGIPIKFVKSILPLLLKPMHHIFNSIIKLGVYPNA
FT                 WKISKIVPINKKSNSNSLDNLRPISILSAISKIFEKLVKNQIVTYISNSNL
FT                 LSSSQSGYRKGHSPKTAMIKVCDDMGFVLDSGGSVVLLLLDFSKAFDSICH
FT                 ETLCHKLESQFGFDFDAVSLVRSYLTNRSQTVFVNNQFSEYLPITSGVPQG
FT                 SVLGPILFTLYINDLPIRLAGCNVHLFADDVQVYFNCSGLTTDAAAELINN
FT                 NLQRILDWAVENHLILNARKTQACYISRFKRMVEKPEIVLNGNRILYSDVV
FT                 TSLGIIVQQNFEWDSFILHQCGKVYAALRTLRSNAYFLSSATKLRLFKSLI
FT                 LPHFITCDFIMTQASRTTMDRLKVALNCCIRFVYNLNRYSHVTPLQNALIG
FT                 CPFNKFPSVRSVLLLHNIIRTQSPSYLFSKLIPLRSVRGKKFVIKRVRTSH
FT                 YASSLLVRGISLWNNLPSHIQNTNSSLGFKKTCLQFFNHE"
XX
SQ   Sequence 4392 BP; 1326 A; 808 C; 845 G; 1413 T; 0 other;
     gtgtgtcaac agtggtagaa tgaggtgaca tggttatatc gttgcgcctc taaagcgaaa        60
     ataacgcgta tatccacctt gttgtgttcg ccatctgcgg tctaccgttg agtataatcg       120
     tgttgctgta cattaaaccg ttatctcatc gattggtgaa gtcctttgga agaaaagcga       180
     ttaatatcat cagttggaca ttccgcgaga taaagtctac aagttgctgt tgttgctgtg       240
     ttgtgcgctc tatctgtatt gctgttgctg ttgtatgctg ttgctgcttc catctgacta       300
     ttgctgctgc tgtttgtgtg gtactgttcg tcgtggtgtg cctcggttta ataacagttc       360
     atgagtcaac tgtggttacg cagccgaaca gccgaaatgt caaaactcga ttccaagcgt       420
     aaggagatcg ttcacggtag ttccccatct aacgagatct ccaacaatga actggcacga       480
     ttgattacaa accagggcaa aacaatgcag gaccaagtaa ataaactcgg gaacgatttg       540
     cgtgcagagt tttcgaaagg aatggatgag attaaggcag atttggttga agtcaattcc       600
     aaattatgct gtatgcgaca agatgtgttc gacaatgcca acgcgattgc tcgatcgaac       660
     ctttcgaacg atttgatcat tagcggagtt cctttcaccg agaacgaaga tctactacac       720
     tatttccgat gctggtgcaa gactatgggc tatgcagatg gtaatgtccc atacgtggat       780
     attcgacgcc tgtccaggac accgctgaat gctggcaaca tctatttcat tttggtgcaa       840
     ttcgctataa ccaaccagcg caacgacttt ttctcgtgtt atctgcggaa tcagtctctc       900
     aatctgaacc aaattggctt ccaaaccaac aagcgagtgt acgtaaatga aaatcttact       960
     cccacggcca gaaaaatcaa atccaaggcc atcgaattga ggaaagcagg gaagctggca      1020
     aaggtttttt cacgtgcagg ggaaattttc gtcagaagca aagagatcga ccaagacgtt      1080
     atcatcaaat ctgaagagga tctaagacgt ttcgagcatc ttggcggcta atcctatccc      1140
     tataagtgct ctctgtcctt cctcacctgt cctaatttct ccatgtatcc tgtcctgaaa      1200
     gttgtagcca ataagttttt tttttttaat taaggtttaa catcaatcct tgctattacc      1260
     ggtagattgt gttattttta tctttatgtc tagtttgttt cttttttctt tgcgttatta      1320
     gtagttttat gcgtagtcca tatcaatgta aatcaggttt ttgtttttgt aaataatgca      1380
     atattcgagc gaaaaaggaa tgcgtaaaca tgttttctta gggtgggatt tcaactggga      1440
     taatggctaa tgtacgccgc gaatatacct ctacagattg gagtgttcag ggaatcgtaa      1500
     tgaaatcagc atttatatct aacaaactgt caatttgctg catgaacgct caaagcatat      1560
     gtgccagacg aatgagtaaa gttgttgagc tgcgtcagat tgcaaaagtt tcaaatgtag      1620
     acgttatttg catcacagaa tcctggttaa atattaatgt ttccagtgat gtgttggata      1680
     ttgaaggata cacaattgtc agaaatgatc gtgtgggtag gcttggagga ggtattcttg      1740
     tatacctgaa aaagaacatt aatttcaaaa ttattgaagc atccagcaat gatattggta      1800
     cacctgaaac agaattcatt tttgtggaaa tttctatcga tcacagaaaa gtgctcatgg      1860
     gattttttta taatccccca gaactagatt gctcgcaagt gattcacgat aaattgacct      1920
     gcttaaaata tcaatatgac catatctatt tgatgggaga ctttaacacg aacataataa      1980
     atactttatc agaaaaagta aagcggttct gtgctacttt acaatgttta tctctttcaa      2040
     gtctaggccg tattccaaca cattttcatc gaactggtgc atcacttatt gatatgatta      2100
     ttacaaatga tactggttct gtgctacgct tcaatcaaat tgaagttcca tttttatcta      2160
     atcacgattt attatttgct tcactggatt ttgatttgtt gcctaataat aatacgagga      2220
     cttttcgtga ctatagtcga attaattcat ccaaagtaat agaattgtat aaccgaattg      2280
     agtggaatga attctattct attgataacc ctgactattt ggttcctttt ttcaacaatc      2340
     acatagagaa tatattcgat tcctgcgtac cattaaaaac agtccataac catccaagaa      2400
     gcaatccttg gttcaaccag gatatatcca aagcaatgat tgatcgtgat ctagcctacc      2460
     gagtgtggaa ggtctcaaaa tgtgatactg actattcgtt gtataaaagc ttaagaaata      2520
     aggtcactgc tttgataaat acagctaaga aggagtattg gaacacaaaa gtttcaaatg      2580
     cttctacctc aaaagaatta tggaaatatt ttggacaaat gaacgtcaat tctaagaaaa      2640
     caaacggtga tacacgtttt tcgcctgatg aaatcaatgt ccatttttct aattgctaca      2700
     gcactagcaa cgatgttgtt gcgaataatc cgtctttggt tgattcattt ttttctttta      2760
     gtgccattga attgaatcaa ataataaatg caacttatga aatcaagtct aatgcagtcg      2820
     gtttagacgg aatcccaata aaatttgtga agtctatttt acctctcttg ttgaagccaa      2880
     tgcaccatat tttcaacagc ataataaaac tgggggtcta tcctaatgcg tggaaaattt      2940
     caaaaatcgt gccgataaat aaaaaatcta atagcaattc tttggataac ctccgaccca      3000
     tcagcatatt gagtgccatt tcaaaaatat tcgaaaagtt ggttaagaac caaatagtca      3060
     cctatatctc gaatagtaat ttactctctt cctcacaatc tggttatcgt aaagggcata      3120
     gtccaaaaac agccatgatt aaagtatgtg acgacatggg ctttgtccta gatagtggcg      3180
     gctcagtagt acttctgctg ctagattttt caaaagcatt cgactcaatt tgccatgaga      3240
     ctctgtgtca caagttagag agtcagtttg ggttcgactt tgatgctgta agtctcgttc      3300
     gttcgtatct gacgaataga tcgcagactg tgttcgtgaa taatcagttt tcagaatatt      3360
     tgcctattac ttcaggtgta ccacagggct cagtacttgg gccgatatta ttcacgttat      3420
     atatcaacga tctcccaata aggttagcag gctgtaatgt ccaccttttt gcagacgacg      3480
     tacaagtgta ctttaattgc tcagggctta ctactgacgc tgctgcagaa ttgataaaca      3540
     ataatttgca aagaattttg gattgggctg tggagaacca tttaattcta aatgcacgta      3600
     aaactcaggc ttgttacatc agccgtttta agaggatggt ggaaaaacca gaaatagtgt      3660
     tgaatggtaa tcgaattttg tactctgatg ttgtaacgag tctgggaatc atcgttcaac      3720
     aaaatttcga atgggatagt ttcattctac accagtgtgg gaaagtttat gctgctttac      3780
     gtactcttag atcaaacgca tattttttga gttcggctac gaaacttcga ttgttcaaaa      3840
     gcttaatact cccacatttc ataacttgcg actttattat gactcaggca tccagaacta      3900
     caatggatcg attgaaagtt gcacttaatt gctgcattcg atttgtctac aatctaaatc      3960
     gctactcgca tgttactccg ctacagaatg ctttgatcgg ttgccctttt aacaaatttc      4020
     cttcagttag atctgtttta ttgttacata acataatacg aactcaatct cctagttatt      4080
     tattctcaaa attgattcct ttgagaagcg tacgaggtaa aaaatttgtt ataaagcgcg      4140
     taagaacttc tcactacgcc agttcactcc tagttagagg tatatcttta tggaataatt      4200
     taccatcgca tattcaaaat acgaattcat ccttagggtt taagaaaaca tgtttacaat      4260
     tctttaatca tgaatagata ttaattttcg tagaaagttt tttttaatgt gtcatctcat      4320
     actattaatc tacgcttaac agaaaagact atgtcttatg tttatggaaa ataaaaatga      4380
     aatgaaatga aa                                                          4392
//
ID   Kiri-4_CQ   repbase;    DNA;    INV; 4383 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4383
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 123-123 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           299..1345
FT                 /product="Kiri-4_CQ_1p"
FT                 /note="PHD zinc finger at the N-terminus."
FT                 /translation="MAKNRSSDEICDVCNRGAPPGSKGKRKPKTITWIGCD
FT                 ACPRWFHPLCVRISDSQMEEIDDYQYFCESCAVRGCLIPKPQPVMTASGGV
FT                 SELKKVIQELSAELTKLRAELDAARETNKKQLDRLRNVVNSNTRSEVTTTR
FT                 LASDLSEKLEKIERGAQLANTCSQTINSCRLAINKIPFKVGENVRQLVADV
FT                 LTLVGCSDEQASITDCFRVPAKPSKWSDRSLTPTIVAVFSSLEARQKVLRK
FT                 YFERHKDAALRNLKHGPALDYRFTVNEVLSINTFRIRNHALRLKQRGAARS
FT                 VFVRNDKVSVLLPGQVRYTPVNSVEHLQELVSSGSSSDSSSLFFDALSANV
FT                 SASSRC"
FT   CDS           1349..4225
FT                 /product="Kiri-4_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="HETSLAFLLTKMTNIANLRIGHLNVRGLEHHIDGVKL
FT                 LLDAQQYHFFGVTETKMRASAPVGPVRVPAYNLIRHSLPSGRGRGSKACGG
FT                 VGLYVRQGLKATPVIKSTHDIAAPIATRVEYMVVQIRINELNVGVAVVYNP
FT                 SCSNPSFAVLYERVLLEMLDLGFDRTFIMGDFNINVASVLPSLNLTSLRRI
FT                 HSTFNLTVLPTGPTRITDTSSTTIDLLITDCPQSVRKAKAVSASAISDHEV
FT                 IYMLADVQVRNQNRRTTRIRNFRNVDVLQLQAEYRTKDFQRFYESNDVEEK
FT                 ATLLTADLQELLDRHAPERMIYVRDERTPWITHQIKQTIELRDLALKLYKR
FT                 NPNRRRGDQQWLEHSRLHDRANSLIHAAKKRYADQHFNHELPAKKLWSNLR
FT                 REGIHNSAKADPPAEGVDADDLNRFFSDGHRELGTNRGSTRSRTPAHRTVV
FT                 DHGENGFNFRQTNSEEVNRKIHDIQTNATGTDGIPISFVKMLCPLILPELC
FT                 HLFNAIITARAFPSLWKTAIVTPIPKQPSPSLPKHFRPISVLPAMSKVLEK
FT                 ILLDQITDHLDNPNAPLLAKHQSGYRKGFGTTTALAKVTHDIYSNLDNNSC
FT                 TVMVLVDFSLAFNCVDHHLLKDKLNREFRFSSASCELVASFLGQRKQSVRL
FT                 GDAVSAVRDVTDGTPQGSCLSALLFSLFINSLPGVLRCEYQLYADDLQIYV
FT                 SGPIEQIEDLIASINNDLAAITNWANQNRLHPNPKKTQAIVFTKAGSVRPH
FT                 TDIVFSGEVVPLSDRVVNLGLLLDNNMTWKHQVNSVTQKVYNTLRTFRRFA
FT                 AVLSQPTRRKLVQAVIMPMFTYCDVVYYHGLPAAHKEQLHRCFKSAVRFVY
FT                 NLRRRETTAAVRSTILGHDLPINYQLRTSCFMKKGYDGNLPEYLQQHLVRG
FT                 QLERTRSFIIPRHTTTSGRSVLVAGTTCWNNLPLELKTQPTLSAFKSAFKR
FT                 SFDD"
XX
SQ   Sequence 4383 BP; 1162 A; 1206 C; 1054 G; 961 T; 0 other;
     aaaatattga aaagacggca acactggcag ccggctgcaa ccaaaacaaa gccgctgaaa        60
     aagaaattac aaattctcgc tgttttctac gatttacgtg cggaaaaaag tgtccagtgc       120
     cgaaacaaaa ccgtttgcta cacaattaca gtgtttgcaa gtaccggcta gtgtttgaca       180
     aagttttttg aacatttgtt ttccctcctg caaagtgagg tgatgtgcta agtgtgtgtg       240
     tgtgttttga aacgccagcg ccaatagtgt ccggtagcag tactatcaca atttcgacat       300
     ggcaaagaac cgctcgagtg acgagatctg cgatgtctgc aaccgcggtg cgccacccgg       360
     gtccaaagga aagcgaaagc caaaaacgat tacctggatc gggtgcgatg catgcccgcg       420
     ctggttccac ccactatgtg tgagaatcag cgactcgcag atggaggaaa tcgacgacta       480
     ccagtacttc tgcgaatcct gcgcggtacg tggttgtctc atcccgaaac ctcaacccgt       540
     gatgaccgct tccggagggg tcagtgagct gaagaaggtc atccaggaac tgtcagcgga       600
     gctgaccaaa ttgcgggccg agctcgatgc tgctcgcgaa accaacaaga aacagttaga       660
     tcgtcttcgc aacgtcgtca acagcaacac ccgttcggag gtcaccacga ctcgcctagc       720
     aagcgatctc agcgaaaagc tagagaagat tgagcgagga gctcaactcg cgaacacctg       780
     ctcacaaacg atcaactcct gcaggctcgc gatcaacaag atcccgttta aggttggcga       840
     aaacgtcagg cagctggttg cagatgtact gaccctagta ggatgtagcg atgaacaggc       900
     gagcatcacg gactgctttc gtgttcctgc gaaaccatca aagtggtcgg accgttcact       960
     cactccgacg atcgttgcgg tcttcagcag tctcgaggca aggcagaagg tgctacggaa      1020
     gtacttcgag cggcacaaag acgctgccct acgaaacctg aaacatggac ccgccctgga      1080
     ctaccgcttc accgtcaacg aagtgctctc gataaacacg ttccggatac ggaaccacgc      1140
     gcttcggctg aaacaacgag gtgcggctcg gtccgttttt gtgaggaacg acaaggtttc      1200
     tgtgcttctc ccagggcaag tcagatacac ccccgttaac tctgtcgagc atctacaaga      1260
     actggtaagt tcggggagtt cctcggactc ttcgtctctg tttttcgacg ccctctctgc      1320
     caatgtctca gcatcttcgc gctgctgaca cgaaacgtcg ctggcgtttc tactcaccaa      1380
     aatgacgaac atcgctaacc tccgaatcgg ccacctgaat gtcaggggcc ttgagcacca      1440
     catcgatggt gtaaaacttt tgctcgacgc tcaacaatac cacttcttcg gagtcactga      1500
     aacaaaaatg agagcttccg ccccggttgg accggtgcga gttccagcgt acaaccttat      1560
     ccggcactca ctgccgtctg gccgcggccg gggatcgaag gcctgcggcg gcgtgggact      1620
     ttacgtgcga cagggtctca aagcaacgcc ggtcatcaaa tcgacccatg acatcgcagc      1680
     tccgatcgca acgagggtgg agtacatggt agttcaaatt aggatcaatg aacttaacgt      1740
     cggggtggct gtggtgtaca atccgtcgtg ctcgaatccg tcgttcgccg tgctctacga      1800
     aagggtcctt ctcgagatgc tcgatcttgg ctttgacaga acatttatta tgggagattt      1860
     caacatcaac gtagcgtctg tcttgccttc gctgaatctg acctcgttga ggcggattca      1920
     ctcaacgttc aacctcaccg ttctgcctac tggtcccaca agaatcaccg acaccagctc      1980
     aactaccatc gacctgctga tcaccgactg tccacagtcc gtccgaaaag caaaggcggt      2040
     ctccgcaagc gctatttctg accatgaagt gatctacatg ctggctgacg ttcaggtgag      2100
     gaatcaaaac cggcgtacga cccgaatccg gaatttccgg aatgtcgacg tgctacagct      2160
     gcaagcagag tatcgaacca aggattttca acgcttctac gagtcgaatg atgtagaaga      2220
     aaaagcaacg ctgttgactg ccgacctgca agaactcctc gatcgacatg cgccggaaag      2280
     gatgatctac gtccgtgatg aaagaactcc ttggataacg catcaaatca agcagaccat      2340
     cgagctgaga gacctcgcgc tgaagctgta caagcgtaac ccgaaccgga ggcgaggtga      2400
     ccagcaatgg ttggagcact cgcgcttgca cgatcgtgcg aactcgctga ttcatgcggc      2460
     caagaagcgc tacgctgatc agcacttcaa tcatgaactt cccgccaaaa agctctggag      2520
     caacctcaga agagaaggca tacacaactc agccaaggca gacccaccag cagaaggagt      2580
     cgacgctgat gatctgaacc gtttcttttc tgacggtcac cgggagctag gaacgaacag      2640
     aggcagcacg cggagtagaa caccagccca cagaacagta gtagatcacg gagaaaacgg      2700
     attcaacttt cgacaaacca actcagaaga agtcaaccgc aaaatccacg atatacagac      2760
     caatgccaca gggaccgacg gcatacctat ctcgtttgtc aaaatgttgt gcccgctgat      2820
     cttgccggaa ctctgtcacc tcttcaacgc cattatcaca gctcgagctt tcccgtcttt      2880
     gtggaaaaca gccattgtaa caccgatccc caaacaacca agtcctagcc tgcccaagca      2940
     tttccgcccg atcagtgtcc ttccagcgat gtcgaaggtg ttggaaaaaa ttctgcttga      3000
     ccaaatcacc gatcatctcg ataacccgaa cgctccgcta ttggccaaac atcaatcggg      3060
     atacaggaag ggattcggga caacgactgc tctcgccaag gtaacgcacg acatctacag      3120
     caacttggat aacaacagct gcaccgtcat ggttcttgtc gatttttcac ttgcgtttaa      3180
     ctgcgtcgac caccatctgc tcaaagacaa gctgaatcga gagttcaggt tctcgagcgc      3240
     ttcctgcgag ttggtcgcat cgttccttgg ccaaagaaag caatccgtcc gccttggtga      3300
     tgcagtctca gcagttcgtg atgtaactga cggtacaccg cagggatcct gtctcagcgc      3360
     tttgctgttc agcctcttca tcaacagttt acccggagtc ctgcgatgcg agtatcaatt      3420
     gtatgctgac gatcttcaaa tctacgtgtc cgggccgatt gaacagatcg aagacctgat      3480
     tgccagcatc aacaacgact tggctgcgat caccaactgg gccaaccaaa atcgacttca      3540
     cccgaacccc aaaaaaacgc aggccatcgt tttcaccaaa gcaggctcgg ttcgacccca      3600
     cacggatatc gtcttcagtg gagaagttgt tccactgtcc gacagggttg tcaatcttgg      3660
     tctcctgctg gacaataaca tgacatggaa gcatcaggtc aacagtgtga cacagaaggt      3720
     atacaacact ctaaggacat ttcgccgctt tgcagcagtc ctctcccaac cgacacggcg      3780
     caagctggtc caagctgtga tcatgcctat gttcacctac tgtgacgtag tctattatca      3840
     cgggcttcct gcggcacaca aagagcaact ccaccggtgc ttcaaatcag cggtgcggtt      3900
     tgtgtacaat ctgcgacgtc gcgaaacaac tgcggccgtg cgaagcacca tactcggaca      3960
     cgatttgccg atcaactatc aactgcggac gagctgcttc atgaagaagg ggtacgatgg      4020
     caacctgccg gagtacctcc aacaacatct ggtgagagga cagcttgagc ggacccgatc      4080
     attcatcatc ccgcggcaca caacgacgag tggaagaagt gttcttgtcg ctggaaccac      4140
     gtgctggaac aacctacccc tggagctgaa aacccagccg acgctgtcgg catttaaaag      4200
     tgcttttaag agatcgtttg acgattagtt ttctttagct tacttgtacc tgttaccctt      4260
     tatttggatc ctttgtaact tttctaaatt tcctaaagtg tcttccttga cctgattaac      4320
     agtgtaaact aacaagttgt cgtacccaat aaaccaacaa attacaaatt acaaattaca      4380
     aat                                                                    4383
//
ID   Kiri-4_DEl  repbase;    DNA;    INV; 2493 BP.
XX
AC   .
XX
DT   02-JUL-2021 (Rel. 26.08, Created)
DT   02-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2493
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4593-4593 (2021).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 2493 BP; 870 A; 428 C; 410 G; 759 T; 26 other;
     taaacaacat gaagacagtg caatagaata watattctta gaagtggaca gcaaatttca        60
     aaacaacaaa gcacttactg gctgtatata ccgaccaaat cggttaatag attatgcgcc       120
     tttagttgac attataagtg agttatcagt tgcctacgtg gatattatta ttgctggcga       180
     cttcaatagt aatcttctta gcgaawktag gcttttggat agttttgaag caattggact       240
     gaatgctgwt aatacgacga ctccgacgca ttttagtaat tcctgtgata atcttcttga       300
     catatttttt tatcagtgac actagaaaac ttttattgta tggccaggtt aatgcaccag       360
     tattttctaa acatgaccta atttttttga catatgacat aagacttgcc aatgatcttc       420
     aggatgaata caatgcttgt gactggtttc ctatttatca aagcccttct gttgaatgtc       480
     aactggatgt mtttaacaat aacttgcaat atatgtttaa taaagtgttc agcttaaaag       540
     aaaagtgtta agacctaaac aaaatcattg gttagtaacg aaattaagtg tctaatatac       600
     gaacgcgatm wagcmttcca matgtggaag cgctataaaa cwgwatatag gatacagttc       660
     aaattagcca gagccaaagt ttccaaaaca attaaaaatg ctaagcgcga ttactttaaa       720
     aataaatttg aaaactctgc ctccgctaaa caaacttgga gggaaatgaa taaccttgga       780
     atagggaaat gtaagcaaat gaatgaccac tacgttgaag cattttcaca acttaaagta       840
     cctgaggcta gatgcaataa ttacctgaca tatcaaccct actgtgataa tagttttagc       900
     tttgtgtgcg tcaatgaatg tggtgtctta gagtgtatcc ttaaaataaa atcgaatgct       960
     gaggttagac aatatagccc taaattctca aagctcatat aaaaaaaatt ttaacacatc      1020
     cattgaacgt cagtttttcc ttcaatttgg aagaaagcta aagttatccc aattattaaa      1080
     ccaataggat tacaggccca tttccattct acccttccta gccaaagctc tcgaaaatgt      1140
     aatgtcctta caaattcaga cttttcttga acggaactcg ttgctttcgc caaagcagtc      1200
     tgggtttaga aaaaaaaagc ataggtgcaa aaacagacat cgttgaagac attcgctgcc      1260
     aactggacaa taattgtgca acattcttaa ctcttcttga ccatagcaaa acatttcact      1320
     cggtgaacca ctacattctt agtagtaagc taaaawatct gtacaatatt acagatactg      1380
     ctgcgcattt tatttcttca tatcttgctg gcagacaaca agcagtggta tctgggagtt      1440
     ctgtgtccag ctttagagat ttaactaggg gagttcctca gggatctgtc ctaggacctc      1500
     tattgttttc catatatgtt aatgatttgc ctagtgtctt gtccggttgt gaagtccatt      1560
     tatatgcaga tgatgtccaa gtttatgtta gtagtccgat waatmgaata aatgtctgtg      1620
     ttagtwagag twatwawgtt ctgtgtctkg ttgacaattg ggcgaaakac aacggctwwa      1680
     gcataaatcm aaagtcaaaa tgcataktaa ttagcaagaa atcaatggat accagatgct      1740
     tagagagtct ggtaattaat aacatgccta taaaatatga ggagtatgca acaaatctag      1800
     gtatcacttt tagcaatacc ttgagctgga gtaaacacac ttcaaagcaa ctggacgtca      1860
     gctttcggct tcaaaagaat ctgccacagc atattaggat gctagtatct aaagtaatcc      1920
     tagtccccac acttttttat ggggttgaga tttttggtca ctgtgatact agagatttac      1980
     acaagtaaaa gtacgtcaaa ttctatagca gatatgcaca tgtataacct gaaacgactt      2040
     gaccatgttt cgcacttgat cattgaactt cggccacgtg tctccatccc cgcaacatcg      2100
     caagctcaca attttatatg cccaagattt aaatcgctgt tcaaatagac aattttgtat      2160
     aaatgctata cgcctctgga acagcctacc acataactta aaaacwatta ggtgcgcaac      2220
     tcagtttaaa tgtaacatta gggaatattt aaaataaaac aaaatatatt twaaatcaaa      2280
     agtatctaaa acaaaattat taaattaaac aaataaacag aattaaaatt atttatatca      2340
     gaaagattaa tgcaacatat taatattaac aataaataat aaatatatat aatataatat      2400
     caattttgtt agaataagat agatcttaag tcatcaaaca aaattttaat attttcaacc      2460
     cattttgact agtgcattaa ataaataaaa taa                                   2493
//
ID   Kiri-4_DK   repbase;    DNA;    INV; 4097 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4097
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1348-1348 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           85..1035
FT                 /product="Kiri-4_DK_1p"
FT                 /translation="MSTSNKRLRKDTGAAERLSDAPSPQMLELIKIRFQEQ
FT                 TEAIAGLVREAEMRILSTLSERLDSIAGEVKQTGVRVSNLEREVADLRSQR
FT                 EQLCARVEHLHREVADMRAMRERVGTVEAKLAAQNLTNNAFDLRMHGVPYS
FT                 EGENLRTLFNTLCFSLHITPPPRVRDIFRARKSQKSNVDPVIIIKMENARE
FT                 KVMLLRSTAAYRRESKSQLSLKFVGIDSDAPIYINEQLQREQYQIFKEAMR
FT                 LKKHKVLNAVFTRRGLVHVRCKGSESVRCIEHMDELLRLADNDSGSLSALT
FT                 LSSSPALQPNGCLDXQPAVSESFRS"
FT   CDS           1273..3924
FT                 /product="Kiri-4_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MHRAYLNKIDEFRLLFVQSNVDLSNILIDCEGYVLFR
FT                 SDRVGHAGGVAIYVKRTFNCRVKCRQPIDSKIEYIFLEVANKFLYNKVLFG
FT                 CIYRPNRTIDFDPLMETISELSASYDDVILAGDFNSNILSESHLLDSFEAL
FT                 GLYAANKITPTHFSNNCDTLLDLFFINDPRKILLYDQVSVPVFSRHDLIFI
FT                 TCDITLDDTEESFSYRDFKNINYTDLQLQYNACDWCPIYQCSTVESQLNVL
FT                 NNNLGYIFNKCVPVKTRVSKPRQNPWFNNEIKKLINQRDVAYFRWKRYKTH
FT                 NFCMQYKEARSLVTKNIRAAKCEHFKSKFNTQLTGKQTWRELSKVGIGRVK
FT                 QSVDRNVDVEKLCRSFSQIDVPEATSNQYLNNIIHCDNSFSFVCVDQCDVL
FT                 ESILKIKSNAEGLDNVNPKFIKIMLPLLLPHITHIYNSAITTSTFPSSWKI
FT                 AKIIPVLKPNKDYRPISILPFLAKVLENLMSQQIQKFLERNSLLSPKQSGF
FT                 RKKRSCVSAITNIVEDIRQKLDNNCVTFLTLLDHSKAFDSVNHHILSTKLK
FT                 NHFNFSCTAVRFIESYLCDRLQAVVVGARTSDFCQLSRGVPQGSVLGPLLF
FT                 SMYVNDLPSLLSDCEVHLYADDVQIYVSSPIRQLNVCVSVSNNMLNVIYKW
FT                 AKGNGLCINPSKSKCIVIAKKPIDTTNIPNLAINGTLIQFEQSAVNLGFTF
FT                 SNTLSWSKHISKATGRTYGMLRQLSYSKSFLPIQIRLLVARVILIPTMFYG
FT                 VEVFGHCDTRDMHKLAVGLNSIVRYVFNLKRLDHVSHLTNKILGLNLTSWI
FT                 RYRTLLYFHKIVISQEPTYLFDKLKSATSTRTNNYICPRYNSLCSNRQFFT
FT                 NAIRLWNNLPHRYKTIRAATQFKSQIKEYLK"
XX
SQ   Sequence 4097 BP; 1291 A; 760 C; 795 G; 1248 T; 3 other;
     ttatttttat aaataaacca acaaacttct aattaaaaac gttcagtgtg taataaaaca        60
     agagtaatca gaaacctaaa aaatatgtcg acgtccaaca aacgcttgcg gaaggacact       120
     ggagccgctg agcgtctctc cgatgccccc tcgccgcaga tgctggagct catcaagata       180
     cggttccagg agcagaccga agcaattgct ggtctagtga gggaagctga gatgcgtatc       240
     ctcagtaccc tctcggaacg tctggattcc atagcgggtg aggttaagca gacgggcgtg       300
     cgggtctcta atctggagcg ggaggtagct gatctacgct cgcaacggga acagctgtgt       360
     gcgcgtgtag aacacttgca ccgggaggtc gcggatatgc gtgcaatgag agagagagtg       420
     ggcactgtag aggctaagct ggctgctcaa aatttaacca acaatgcgtt tgatctacgc       480
     atgcatggcg tgccctactc agaaggcgag aacttacgca ctttattcaa cacactatgc       540
     ttctcacttc acatcactcc tccgcctcga gttcgggaca ttttccgggc ccgtaagtcg       600
     cagaaaagta atgtggaccc ggtcatcatc ataaaaatgg aaaacgcgcg tgagaaagtc       660
     atgctgctac gatcaacggc agcttatcgg cgtgaatcaa aatcacaact aagcttaaag       720
     tttgtgggta ttgattctga tgcgccaatt tacataaatg agcaacttca gagagaacag       780
     taccaaatat ttaaagaggc aatgagacta aagaagcaca aggtcttaaa tgccgtattt       840
     actcgccgtg gacttgtcca tgtccgatgc aaagggagtg agagtgtacg atgcattgaa       900
     catatggatg agcttttgag attagctgat aacgacagtg gatctctttc tgctcttact       960
     ctctcctctt cgcccgctct tcagccgaat gggtgccttg atgamcaacc tgctgtttcg      1020
     gagagctttc gctcttaaat ttagttattt atgttatgtc agattagttt ctaagattaa      1080
     tttaaaaata ggtaattgtc ttcataattt atgtctttat tgtttatttt tctatgtatt      1140
     ttgtaaaact gagtttgcga ttctagaatt ttattactat gtcagtgacg gataatatga      1200
     gggtctctac gacgggtagc atgattcgag ttttatctaa tcataaaagg ggtataaaag      1260
     ttgttcatat aaatgcacag agcctattta aataaaattg acgagttcag gttacttttt      1320
     gtccagtcta atgttgattt gtctaatatt ttgattgatt gtgagggtta tgttttgttt      1380
     cgttcagatc gtgttggtca tgctggtggt gtcgctatat atgttaaacg tacctttaac      1440
     tgtagggtca aatgtaggca accaattgac agcaaaattg aatatatttt tttagaagta      1500
     gccaacaaat ttctctacaa taaagtgcta tttggttgta tatatcgtcc aaatcgcaca      1560
     atagactttg atccccttat ggaaactatt agcgaattat cagcttcata tgatgacgtc      1620
     atcctagctg gagactttaa tagtaatatt ctaagcgaaa gtcacttact agatagcttt      1680
     gaagcgttgg ggctgtatgc tgccaataaa attacaccta cacattttag caacaactgt      1740
     gatactcttc ttgacctttt tttcattaat gaccctagaa agatattact atatgaccag      1800
     gtctccgtac cagttttctc cagacatgac ctaattttta taacctgtga tataactctg      1860
     gacgatactg aagaatcttt tagctataga gactttaaga atattaatta tacagacctt      1920
     cagcttcaat ataatgcatg tgactggtgt cccatatatc aatgttctac cgtagagtct      1980
     caattgaatg ttctaaacaa taatttaggc tatattttta ataaatgcgt accagtmaag      2040
     actagggtgt ctaaaccgag gcaaaatcct tggtttaaca acgaaataaa aaaacttatw      2100
     aatcagaggg atgtcgccta ttttaggtgg aagcgataca aaacccataa tttttgtatg      2160
     cagtacaagg aagcaagatc tcttgttacc aaaaatatta gggctgctaa atgtgaacac      2220
     ttcaagtcca aatttaacac tcaacttact ggtaaacaaa cttggcgaga attaagtaaa      2280
     gtaggaatag ggagggttaa gcagagcgtc gatcgcaacg tcgatgttga aaaattatgt      2340
     cgatcgttct cgcaaattga tgtgcctgaa gctacatcta accagtacct taataatata      2400
     attcactgtg ataatagttt tagctttgtg tgtgttgatc aatgtgatgt cttggagagc      2460
     atactcaaga taaagtctaa tgcggaaggc ttagacaatg tcaatcctaa atttataaaa      2520
     ataatgttgc ccttacttct cccacatatt acacatattt acaattctgc aattactacc      2580
     tccacattcc catcatcttg gaaaatagct aaaataatcc cagtgctaaa acccaataaa      2640
     gactataggc caatttcaat ccttcctttt ctagccaaag tgcttgaaaa cttaatgtcc      2700
     caacaaattc agaagttcct tgaaaggaat tcgttacttt caccaaagca gtcgggtttt      2760
     cggaaaaaga gaagttgtgt gagtgcaata acaaatatcg tggaagacat tcgacaaaaa      2820
     cttgacaata attgtgtgac ttttttgacc cttcttgacc atagtaaagc atttgactct      2880
     gtcaatcacc atattttaag tacaaaacta aaaaaccact ttaatttctc gtgtactgca      2940
     gttcgattta tagaatccta tctttgtgat aggctacaag cagtggttgt aggtgctagg      3000
     acttccgact tttgccaact ctcacgtggt gttcctcaag gatcagtctt gggtccatta      3060
     ttgttttcca tgtatgtgaa tgatttgccc agtctcttgt ctgattgtga agtccacttg      3120
     tatgcagacg atgtgcaaat atatgttagc agtcccatta ggcagttaaa tgtttgtgtt      3180
     agtgtaagta ataatatgct taatgtaatt tataagtggg caaaaggtaa tggcttgtgt      3240
     ataaatccta gtaaatcaaa gtgtatagta attgccaaaa aaccgattga tacaacgaac      3300
     attccaaatc tagcaatcaa tggcacgctg attcaatttg agcagagtgc agtaaactta      3360
     ggatttacat ttagtaacac ccttagctgg agcaaacata tatccaaagc tacagggcga      3420
     acatacggta tgctaaggca gctgtcatat tccaagtcat tcctcccgat ccaaataagg      3480
     cttttagtag ccagggtaat tttaatacca actatgttct atggagtgga agtatttgga      3540
     cactgcgata cacgcgatat gcacaagctg gctgtaggtt tgaactcaat tgtacggtat      3600
     gtctttaatc taaaacgact tgaccatgta tcacacttga ctaataaaat tcttggctta      3660
     aacttgacct cgtggattcg ctataggact ctattatatt tccacaaaat tgtgatatcc      3720
     caagaaccaa catacttgtt tgacaaactc aaatctgcta cctcaactag aacgaataat      3780
     tatatatgcc caagatataa ttcgctgtgc tcaaataggc aattctttac taatgctatc      3840
     cgtctgtgga acaatctgcc acatagatat aagacaatta gggccgcaac tcagtttaaa      3900
     tctcaaataa aagaatattt aaagtaaaat gtaatgtaag aataaaacaa ttattaacta      3960
     gaagacatgt agtaatacgt tatagatata agttcatatg tgttaaaatt aagtatatac      4020
     tatttcaaaa tctttgtgac tagcgctaca attataagtg taaacttgct gcgctaggat      4080
     aatataataa ataaatt                                                     4097
//
ID   Kiri-4_DTa  repbase;    DNA;    INV; 4141 BP.
XX
AC   .
XX
DT   07-DEC-2012 (Rel. 19.10, Created)
DT   07-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4141
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2826-2826 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1173..3965
FT                 /product="Kiri-4_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="MEVEISSSIAHSLVRLLKRQAQGLTIIHLNAQSLVNK
FT                 MDEFRYIFASSEVDIICVSESWLTAETSDMSVSCDGYVLYRSDRASHGGGV
FT                 IIYVQNRLNAKIICKHPTESLIEYLFVEVSNKHKSLKALIGCIYRPNRSTD
FT                 YSHLLDVISDVSLSYTDVILTGDLNSNMLKEANLLNSFKALGLDIVNSNIP
FT                 THFSNSCDTLLDVFFLNDLSKSVIYDQVSVPVFSKHDLIVLTYNLTFEYND
FT                 INIEYRDFKNINYHELETDFVACDWNSIYLLTNVEDQLCVLNTNIKHLYDK
FT                 HVPLKRKITRPKQQPWFNADIRKVIQLRDKAYLRWKRYKTSSTQNNFKKLR
FT                 AMVSSRILAAKREYYSIKFANFSSTKKTWAELRNLGMGKSKQHSTVNGDLD
FT                 ELNSKFVQSDVPEASCNEYLNLQPSCDNSFNFVCVNSCDVLKCILNIKSNA
FT                 EGLDNISPKFIRILLPSVLKYITHVMNTAIMTSTFPCTWKMAKILPIAKSN
FT                 NDYRPISILPFFAKVFEKLIASQMQFFFDENNLLSKIQSGFTKNRSCTTAV
FT                 AGIVEDIRTQLDKGYVTFLTLLDHSKAFDTVNHQILCTKLSNIFNFNTTAV
FT                 ALLKSYLSGRAQAVVSGSDISAFKTIERGVPQGSVLGPLMFCVYINDLPNN
FT                 LSNCNVHMYADDVQIYVSRPLCEMCHCISICNTELNKIHKWAQRNGLGLNP
FT                 SKSKCLIIYKKALETNNLPRIVINNIPIKYVQNAVNLGVTFNNTLQWSTHI
FT                 TKATGKIYGMLRQLSVSQHFLPVNLKILIAKMYLLPSLFYCVEIFGHCDTR
FT                 DFQKLKVGFNSIARYVFNKRRAEHISTLAESIYDMKLEQWIDSRTLIFVHK
FT                 IIMTNEPTYLADKLVHAQSNRTNNLIHPRTRLLCSQRQFYINAVRLWNELP
FT                 HVLKSIRSANQFKIKLKEFLKINNSNN"
FT   CDS           join(82..966,830..1189)
FT                 /product="Kiri-4_DTa_1p"
FT                 /translation="MSASQPKSKRLRENTSTDLSRTSDVPMDKMLAVLNQR
FT                 LQEQAEAMVSNMREAEKRIVDGVAERLDAFMGDVKQLVGRIDTLEKDVEDL
FT                 RSQRDELQSNLERMDHEMARLRELVVNVDKKQAVQDVAKTALDLRIHGVPY
FT                 AEGENVRTLYNTLCYALGLTPPPRITEIFRARKTQRSNVDPVIILKMENLR
FT                 DKILLLRTLGMHRRERKQPLQLNLMGFDSQVPFYINEQLSKEQYTIFKKAM
FT                 HLKRMKKVTAVFTRRGLVHVKHAGDETFHFFEGMQQFTDAFPSTELSFREQ
FT                 QQQLQYLRDAAWCMLNMLEMKHFTSSKECSSLRMPFHQLNCHFVNNNNNNN
FT                 YMSLVNCMSVILMSSQSIITIYLVTKYFYIIIIICITIFFFNLSNCRVFYI
FT                 FQTDDSTLLIYLLTTDGSRNK"
XX
SQ   Sequence 4141 BP; 1386 A; 770 C; 750 G; 1235 T; 0 other;
     atactgccat tcacacttct gaatctttgc acagtgcatc taaaactgtg catctaaact        60
     atcaacgtta agttttaaaa aatgtcagcg tcgcagccca agtcaaaacg cttgcgggaa       120
     aacacaagca ctgatcttag tcgcacttcg gatgtcccta tggataaaat gcttgctgta       180
     ctgaaccaac gactccagga gcaggcagaa gctatggtat ccaatatgcg cgaagccgaa       240
     aaacgcattg tagacggtgt tgctgaacgc cttgatgctt tcatgggtga tgttaaacag       300
     ttggttggta gaattgacac cctggagaag gatgtggagg acctgcgttc acaacgagat       360
     gagctgcaaa gtaacttgga gcgcatggat cacgaaatgg ctcggctgcg tgagctggtc       420
     gtaaacgttg acaagaagca ggctgtgcag gacgtggcca aaactgctct tgacctacgc       480
     attcatggag ttccttatgc tgaaggcgag aatgttagaa cgctctacaa caccctctgc       540
     tatgccttag gcctaacgcc accacctagg atcacagaga tcttccgagc tcgtaaaaca       600
     cagcgcagta atgtggatcc tgtaataatc ctaaaaatgg aaaatctacg ggacaaaata       660
     ttgctactca ggaccctggg aatgcatcgc cgcgaaagga agcagcctct tcagttgaat       720
     ctgatgggat ttgactctca ggtgccgttc tatattaatg aacagctatc caaggagcaa       780
     tatacaatat ttaaaaaagc tatgcacctt aaaaggatga aaaaggtgac tgcagtattt       840
     acgagacgcg gcctggtgca tgttaaacat gctggagatg aaacatttca cttcttcgaa       900
     ggaatgcagc agtttacgga tgcctttcca tcaactgaac tgtcatttcg tgaacaacaa       960
     caacaataac aattatatgt ctctggtaaa ttgtatgtct gtaatcttga tgtcttctca      1020
     aagtatcata accatatatc tagttactaa gtatttttat attataataa taatttgtat      1080
     aactatattc ttctttaact tatcaaattg tagggttttt tacattttcc aaactgatga      1140
     tagcacttta ttgatttatc tattgactac tgatggaagt cgaaataagt agttccattg      1200
     cgcacagctt ggttagacta ttaaaaagac aagcccaagg cttaacaatt atacatctta      1260
     atgcacaaag tctggtaaac aaaatggatg agttcaggta tatttttgct agttctgagg      1320
     ttgatattat atgtgtgtca gaatcctggt taacagctga aactagtgat atgtctgttt      1380
     cttgtgatgg ctatgtgttg tatcgttctg atcgtgctag tcacgggggt ggtgttatta      1440
     tttatgttca aaataggttg aatgccaaaa ttatttgtaa acatccaacg gaaagcctca      1500
     tagaatatct ttttgtcgaa gtatctaaca aacataagtc tttaaaagct cttataggat      1560
     gcatctacag accaaaccgt agcacagact atagccacct gttagatgta atttcggacg      1620
     tctctttgtc ttatacagat gtcatactca caggagacct gaacagcaac atgttaaaag      1680
     aggctaatct gctaaatagc tttaaagcac tcggattaga tatagtaaac agtaatatac      1740
     ctacccattt ttccaacagc tgtgatacat tacttgacgt attctttctt aatgacttaa      1800
     gtaaatctgt gatatatgac caggtctctg taccagtttt ttccaagcat gaccttattg      1860
     tcctgacata taatctgacc tttgaatata atgacattaa tattgagtat agggacttca      1920
     agaatatcaa ctatcatgaa cttgaaactg attttgtagc gtgtgattgg aattctattt      1980
     atttacttac aaatgttgag gaccaattat gcgttcttaa tactaacatt aaacatctct      2040
     atgataagca tgttccactg aaacgtaaaa tcactcgacc taagcaacag ccatggttta      2100
     acgcagatat tagaaaagtc attcagctac gggacaaagc atacttaaga tggaagcgat      2160
     ataaaacttc gagtacgcaa aataatttta aaaaactacg tgcaatggtg tcatccagaa      2220
     ttttagcagc taaaagagaa tactacagca ttaaattcgc caatttttct tccacaaaaa      2280
     aaacttgggc tgaactgcgc aacttaggca tgggaaagtc aaagcaacac agtactgtta      2340
     atggtgatct tgacgagtta aattcaaagt ttgtgcaatc agatgtacct gaagcttcgt      2400
     gcaatgagta cctgaacctg caaccatcct gtgataatag ctttaacttt gtgtgtgtta      2460
     atagctgtga tgtattaaaa tgtattctta atattaaatc taatgctgaa ggtctggaca      2520
     atattagtcc caaatttatt agaattttac tacctagcgt tcttaagtac ataactcacg      2580
     taatgaatac tgcaataatg acgtcaacat ttccatgtac atggaaaatg gctaaaatct      2640
     tacctatagc taaaagtaac aatgattaca gaccaatatc tattttaccc ttctttgcca      2700
     aagtctttga aaaactaatt gcatcccaga tgcaattctt ttttgatgaa aataatctgc      2760
     taagtaagat acaatcgggg ttcactaaga acagaagctg taccacggca gtagcaggta      2820
     tagttgagga tatccgaacg caacttgaca aaggatatgt aaccttctta acgctcttag      2880
     accatagcaa agctttcgac actgtcaacc accagattct ctgtaccaag ctcagtaata      2940
     ttttcaactt taataccaca gcagtcgcac tacttaagtc gtatctctct gggagggcac      3000
     aagcagtagt gtcaggttcg gacatttccg cgtttaaaac tattgagcgc ggtgtccctc      3060
     aaggatctgt gctcggtcct ttaatgtttt gtgtgtatat taatgacctg cctaataatc      3120
     tgtcaaactg taatgttcat atgtacgcag atgatgtaca aatatatgta agtcgacctt      3180
     tatgtgagat gtgtcattgt atatctatat gtaatactga attaaacaaa atacataaat      3240
     gggcgcaaag aaatggtctg ggactaaatc ctagtaaatc aaaatgtctg ataatttata      3300
     aaaaagcact tgaaactaat aacttgcccc gtatagtaat taataatatt cccattaaat      3360
     atgtacaaaa tgctgttaac ttgggtgtaa ctttcaacaa taccttgcaa tggagtacac      3420
     atattactaa agcaacagga aaaatatatg gaatgttaag gcagctgtca gtatcccaac      3480
     actttctgcc agtaaacctt aagatcctaa tagcaaaaat gtacctacta ccctcattat      3540
     tttattgtgt tgaaatcttt ggccattgcg atactcggga ctttcaaaaa ttaaaagtag      3600
     ggttcaactc catagccaga tacgtattta ataaaagaag agcagaacac atatccaccc      3660
     tggcagagtc tatttacgat atgaagttag agcaatggat agattctaga actctaattt      3720
     tcgttcataa gattataatg acaaatgaac caacctacct cgctgacaaa cttgtgcatg      3780
     cccaatcaaa tcgaactaat aatttaatac atccgagaac aagattactg tgttctcaga      3840
     gacagttcta catcaatgct gtgcgcctgt ggaacgaact gcctcatgtt ctcaaatcaa      3900
     taagaagtgc taatcagttt aaaattaaat taaaagaatt tctaaaaata aataactcta      3960
     acaattaaag ataagtttag ttaagtcctt tgtaaacaac tatgtagtat ttttaagaaa      4020
     tattgtcagc tataaattta ctataattat caacacggag tgactagcgt actaattcat      4080
     aagtttcaaa aacttgtaac gctaggatac aataaacaaa taaattaaat taaattaaat      4140
     t                                                                      4141
//
ID   Kiri-4_LMi  repbase;    DNA;    INV; 2043 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2043
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3108-3108 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 2043 BP; 584 A; 499 C; 353 G; 606 T; 1 other;
     aagcaaccta atctgctgtg atcccagttc cgaggattaa gtgagtattt cgccacacca        60
     gcatctctct tgacaaacgc acgggaggga aacaatcgat tcccttaaag tattggtgcc       120
     gatgggccga aaaatttttc tgcagccatt ggccctagac ggtcaggaag tcaatcacga       180
     attcgttcgg cgccgcgggt caggacaaca ttacactgaa aatgatcagc cttctacgat       240
     cccttgctgc ccatagtaac ggtatgttaa caattcttta atgtctacta cgttcccgca       300
     gcctggagaa ggtacttata gaacccctac ctaagaagga ctctgcagta caactttccg       360
     actacaggcc aatatatatt ctatcagcat tgtcgaaggc tcggaatata tagttcatga       420
     gcaggttact attacttaac agcaaacaac cctaaatgat atcagtcagg ttttcgccaa       480
     aatcgcagca cgacgactgc cctaataaaa gtgacagacg aactgaaaaa agctaggata       540
     aacaacaggt aactattatg tgctttttgg atttcagcaa agcatttgac cttgtcgact       600
     tcgacatact actttctaaa ctttctagtt taaatttttc tccaagtgct gtgcagtggt       660
     tccgctctta cctcaaatcc cgccagcagt ttgtagtgat tggaacaaat agatcacagt       720
     ggagggatgt attatcaggt gtcccacaag gatcagtgct gggaccatta cttttctcat       780
     tatatgttta tggtgtgtca acagttctct cccactgcaa ataccacctt tacgcagatg       840
     accttcaatt atatctaacc gccagcccaa gagatctgta cacagcaatc cagcatataa       900
     atgctgacct gcttgcctta tcaaagtggg cacaaaatat cggcttgaaa ttaaatccat       960
     ccaaaacgca agcgatttta gttgctcaca agagactcat tacacagcag tacagggaat      1020
     ctcttccacc actaaccctg gacggcacag ctataccctt ctcttcctcg gcaaagagct      1080
     taggaataat tatggaccaa cacctagact ggactgagca cacaacggca gtctgtaaga      1140
     aggtgtcagc gtcactccac tctatacaga ggtacagaaa agtgtttcct cttcagctaa      1200
     aaagaagctc gtggagacac taatactccc catactcgac tatggtgatt attattcaag      1260
     gactttcgta cgaaagctca cgtagactag aattgtcgat gaatgcttgt gtacgattca      1320
     tttgcgacgt acgctatttc gaccacatca ctccagccta caagcagttg tcatggcttc      1380
     gtgctgataa gcgtagagat tatcatacgc tatgcttggt ctatcgtttt cttaatcttt      1440
     acactccctc ttatttatcg tcaactctaa atctgctatc tgagcagcac aacagaacta      1500
     cccgttccca acaaagtaaa atcctttctg taccatcgca caatactgcc atgttttcta      1560
     aatctttttc tatatcagga accmgacttt ggaacaatct tcctcaaaat atcagaaaaa      1620
     tcagatccct cccaaacttc aaaagacaac taatggccca cctactgtca caatagccat      1680
     ctctctgcag cttactctgg ccagttcccg ctacccttca aactttccct tcccctgtgt      1740
     cggcaaagtc tctatctatt ttccactctt ttctaagagc ctctgtcttt tctttctcct      1800
     tctctacctt tatccctctc ctcttacaca tttacttaaa tgttttaacg tattttattt      1860
     taaatgccct gtaatatttt ataactacca ctagttttat tattattatg tcggctatta      1920
     ttattttatt gttggtgtga tttttgtaat atcttttgta tgtgttgttt cctggtcaga      1980
     tgtaagagag ggcctcaagg ccctaatctg gtcaggctaa ataagcaata aataaaataa      2040
     ata                                                                    2043
//
ID   Kiri-5_AAe  repbase;    DNA;    INV; 4644 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4644
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 700-700 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >93%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           595..1101
FT                 /product="Kiri-5_AAe_1p"
FT                 /translation="MDYIAESVRRCDKNKELIISGVPYQNQEDLVEVFKRI
FT                 SGSIGFKEXKIPLVELQRLSRSPIAPGLTPPILCEFALRNHRNEFYRNYLS
FT                 KRSLCLRHIGFESENRIYINENLTPNARRIRSEAVKLXKAGRLDSVTTRDG
FT                 IVCVKPKGSEKATALHSLPQVASFIRNPIQ"
FT   CDS           1661..4474
FT                 /product="Kiri-5_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDNDTTFGNNASDGSYIPKAVLNSILMNGKLNVCHLN
FT                 VQSLCARQFTKFEELKNTIFESKIDIACFSETWLDSSISDGMIEIKGFNLI
FT                 RNDRNRHGGGLCVYIRKGLSYRLIHKSESFISTEFLIVELLLGRDRLLICV
FT                 YYNPPNIDCSDILRGHFDEYSVKYDSTFFIGDFNTDPNKHTRKSQCFRDTI
FT                 SSMSYSIVNSEPTFFYKTGSSFLDLFITDSQDKVLKFNQISMPGISKHDLI
FT                 FASLDYSHVKGEHGYWFRDYCHFDAASLREEFHIINWNEFFSINDSDIMAN
FT                 ILNNHLSALHEQFFPLKFQRFRKNPWFNNSIQKAIIERDLAYRNWKRSKTA
FT                 EHETIYKRLRNKVNSVVEKAKAGFDRQRLNVNLPSKQLWQNVRNLGIATKV
FT                 TRPVDNDLTADSINEYFSSNFCADDSRSPEIIGNESGFKFRPVLDYEIINA
FT                 IFEIKSNAVGLDCIPISFIKIITPLVLPMLEHLFNAIISTSKYPSVWKRSK
FT                 VIAINKKPNSSSLTNLRPISLLSSISKVFEKLIKRQISEFVNRMNLLHPFQ
FT                 SGFRKYHSTETALMKVHDDIARTIERNGMTILLMIDFAKAFDRVSHNKLVS
FT                 KLISLYDFSTEAARLIKSYLCNRSQTVWHNGHFSDFIPAISGVPQGSVLGP
FT                 LLFSLFINDLPSVLNFCSVHLFADDVQIYICTDDSSDLTAIANMMNNDLRL
FT                 IMNWSNENLLPINPSKTKAMLISKQKTNITPPKIYINESEVSFVQKINNLG
FT                 VIFTNNLEWEDHIIYQCSKIYGSLKRLNLTTRNSNIDTKLKLFKTLLLPHF
FT                 IYGDFVYTNALTGSLHKLRLALNACVRYVYNLSRYSHVSHLQKNLIGCPFN
FT                 NFYKYRTCINIFKIIKTSNPVFLNEKIIPLRGTRTGNYRVPQHSSMYYSQS
FT                 FFVRGIVNWNSLPTSIKLINSKACFKRDLLLYLQ"
XX
SQ   Sequence 4644 BP; 1476 A; 860 C; 821 G; 1468 T; 19 other;
     gtttctgaag ggatgtacta cwgtacataa gctaaaagtg ctagcagcca agccgtacgc        60
     ttatcactag aaaactatcg ttccttagtg aaatactgct cattttckac gaattgaagt       120
     cctctgaagt gsaaaaacat cgagtttwga tcaaaagtgc tttcgtcgtt acaatttktc       180
     catcttawaa tacgccactt tacgttatta tagtggtgtg aacccttcag aatatcttta       240
     tctggtgttt acggttcacc acttgtcatc gcttcgcaat gwtgcaaaas aacaaaatcg       300
     tcacacgwtc gggatcaacg tcgtctctga atacagtggg atcgcaagcc aaacggtctm       360
     gtgaggatat ttctaaacat gatgacgagg aaatcgctag cttgaatgat ctgtggacga       420
     aaatgcaaac atgatgttca gcaccagtga aaggattgag gcaaaaattg aaagctgcaa       480
     taatgtgctg gaaaagctat ctcgttggtt gaaagtcagc tagctgcggt tcgggatkag       540
     ttttctggca gagtcgttag actcgaggaa gaagtcacag ctacacgtaa tgagatggac       600
     tacatcgccg aatcagttcg tcgctgtgat aaaaataagg agctaatcat ttctggtgtt       660
     ccttatcaaa accaagagga tttggtagaa gtwttcaaac gaatttctgg atccattgga       720
     ttcaaggagm caaaaatacc gctggttgag ctgcaacgtt tatcacgatc tccgatcgct       780
     cctgggctga caccaccgat actatgtgag ttcgctctcc gcaatcacag aaacgagttc       840
     tatcgcaact atctctcaaa gcgctcgctc tgtcttcgtc acatcggatt cgagagtgag       900
     aaccgtatct acatcaatga gaacctcaca cccaatgcta gacggattag gagtgaagct       960
     gttaagctga mgaaagcagg acgattggat tctgtaacaa cgcgtgatgg aatcgtatgc      1020
     gtgaagccca aaggatctga aaaagctacg gcacttcatt cattgccaca ggtcgcttcg      1080
     ttcattagga accctatcca ataaatgctc twaacttcct tcctgctgca tccgtgtttc      1140
     caatcsttmw ttccmtcatt ccaacctctc ctaaaagtca atttaaaagc taaaaaaaaa      1200
     cctatccttg caagctctca aactcctacc atgccattcc atgaatccgt tccactgcaa      1260
     tttccatgat ctcttccctc ctaaaagtca accgctggat tgctgttgct gttggagttg      1320
     ttgttcgacc atggtgctgc tgttgctgtt gttctaattt tgctgctgct gttgctggaa      1380
     acacttttgc tatgattttg atatctcttt tttgaattat ggagaattta attaaagtta      1440
     tagaatatct agaagtaaaa ctttacatta taaattttga tctactggat gttggtacgt      1500
     aacggtttgg ctgtaagcca agaatgcgat aggcgattca aaattatgtg gattttttct      1560
     agtttagttt ctaggtttag gttctcttta attatacatt actcgtcctt tgttcgtatg      1620
     ttaggtaggt ttcttttgaa gcaaatcgtt ctatttgaca atggataatg atactacgtt      1680
     cggtaacaat gcgtctgacg gatcttatat accaaaagct gttttgaatt caattctaat      1740
     gaacggaaag ctcaacgtct gtcatctcaa cgtgcaaagt ctatgtgcac gtcagtttac      1800
     taaatttgaa gagcttaaaa acacaatatt cgaaagtaaa attgatatag cttgtttttc      1860
     ggagacttgg ttagatagtt ctatttctga tggtatgata gaaattaaag ggttcaacct      1920
     gataagaaat gatcgtaatc ggcatggtgg tggactttgt gtttatataa ggaaaggttt      1980
     atcatatcgt ttgatacaca agtcggagtc gtttatttct accgaatttt tgattgttga      2040
     actacttctg gggcgtgatc gtttgcttat atgtgtttac tacaatcctc ctaatataga      2100
     ttgttcagat atactacgag gacattttga cgaatattcc gtcaaatatg attctacatt      2160
     ttttattggt gatttcaata cggatcccaa taaacatact cgtaaatcac aatgcttcag      2220
     agacactata tccagcatgt cttacagtat agtcaattca gaaccaactt tcttttacaa      2280
     aacagggtct tcatttttag atctttttat aactgattcg caagataagg ttttaaaatt      2340
     caatcaaatt tcaatgcccg gtatatctaa gcatgacctt atttttgctt cgctagatta      2400
     ttcacatgta aaaggtgagc atgggtactg gttccgtgac tattgtcatt ttgatgctgc      2460
     ctcattacgt gaggaatttc atatcatcaa ctggaatgaa ttcttcagta taaacgattc      2520
     agatatcatg gctaatatct tgaataacca tcttagtgca ctgcatgaac agttttttcc      2580
     attgaaattt caacgttttc gtaaaaatcc gtggttcaac aacagtattc aaaaggccat      2640
     aatagaaagg gaccttgcat atcgtaattg gaagcgtagt aaaaccgctg agcatgaaac      2700
     catttataag agactcagaa acaaggtcaa ttcggtcgtg gaaaaggcaa aagcagggtt      2760
     tgatagacaa cgattaaatg taaacttgcc gagtaagcag ctttggcaga atgtacgaaa      2820
     cttaggaatt gcaaccaaag ttactcgtcc tgttgacaac gatctcactg cagattctat      2880
     caatgaatat ttctcgtcta atttttgcgc tgacgactcc agaagtcctg aaataattgg      2940
     caatgaaagc ggtttcaaat tccgaccggt tttggattat gaaataatca acgctatatt      3000
     cgaaattaaa tcgaatgctg ttggattgga ctgcattcct ataagtttta tcaaaataat      3060
     tactccgtta gtgctaccca tgttggaaca tctatttaat gcaataatat ctacaagcaa      3120
     atatcccagc gtatggaagc gatccaaagt aattgctata aataagaaac ctaactcttc      3180
     atcattaact aatttaagac cgataagcct attatctagt atctccaaag tctttgaaaa      3240
     acttattaaa cgtcaaattt cggaatttgt aaatagaatg aatttgttac atcccttcca      3300
     atctggattt agaaaatacc atagcactga aactgcttta atgaaagttc acgacgacat      3360
     tgctcgaaca atcgaaagaa atggtatgac tatcttgtta atgatagatt ttgccaaagc      3420
     ttttgatcga gtgtcccaca ataagctagt aagtaaactt atttcgcttt atgacttctc      3480
     cactgaagct gcaagactca ttaaaagtta tttgtgtaat cgtagtcaaa ctgtctggca      3540
     caatggacat ttttcggact tcataccagc tatatcagga gttcctcaag ggtcggtact      3600
     tggtccactt ctattttctc tttttataaa tgacctcccg agtgttttga acttttgctc      3660
     cgtacatcta tttgctgacg atgtacaaat ttacatttgc acagacgata gttcagactt      3720
     gacagcaatt gcgaacatga tgaataatga tctacgcttg attatgaatt ggtccaatga      3780
     aaatttgttg cctataaatc ctagcaaaac aaaagccatg ctaatttcca aacaaaaaac      3840
     caacattacc cctccaaaaa tttatatcaa tgaatccgaa gttagttttg tacaaaaaat      3900
     caacaattta ggtgttatat tcacaaataa tttagagtgg gaggaccata ttatatatca      3960
     gtgttcaaaa atttatggtt cattaaaacg actaaatctt acaactagaa atagcaatat      4020
     tgatacaaaa ttaaaacttt ttaaaacatt gctgcttcca catttcatat atggagattt      4080
     cgtttacaca aatgctttaa ctggatcact tcacaaatta agactagcgt taaacgcgtg      4140
     tgttagatat gtatacaacc tttccagata ctcacatgta tcacacctac aaaagaacct      4200
     tataggctgt cctttcaata atttctacaa atatagaact tgcatcaata ttttcaaaat      4260
     aataaaaaca tcaaatccag ttttcctcaa tgaaaaaatt ataccattga gaggcacacg      4320
     aacaggtaat tacagagttc cacaacatag ttcaatgtat tatagtcaat ccttctttgt      4380
     cagaggcatt gttaattgga acagtttgcc gacttccatt aagctgatta attctaaagc      4440
     atgcttcaaa agggatctct tattgtactt acaatagacg gttgtgttag ttaaagagaa      4500
     caatttttca aaattcaatt atgtacgtta gagtcatttt ttttcatcaa ttgcaatctt      4560
     aactgtaaca ataaaaaaga tgtatatctt acgttacaag gtgatcaata aataaataaa      4620
     taaataaata aataaatata taaa                                             4644
//
ID   Kiri-5_CQ   repbase;    DNA;    INV; 3316 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3316
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 124-124 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(178..606,552..3017)
FT                 /product="Kiri-5_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTNTVNNVQELRFEPINATLKNNLSKENGFKVGHLNT
FT                 CSIICHHDDVKNIFTRTGFDCIGFTETWLNSDIKDALIKFDNFEILRHDRN
FT                 STTRVXGGGVALFVRPEYKTKIIKTSPRDSIEYMFCELKVVSCKLWLVLSI
FT                 NPQPIKSSQLQVVVGVIYKPPTLXDFSFFFEDLGNISSTYNNIILMGDFNI
FT                 NILVSNPMSNNFTRLINSFSLSIVNKSFPTHFHNTGSSLLDYFICSENLXS
FT                 TLFSQVSVPAVSHHDLIYTVFNLPVPVASLKTISFRNFNRIDKEAVRNDFP
FT                 NFNFDQLNGIVDCETLASNFNHKLIQLVNKHAPLKTKTILPTSCPWYSREA
FT                 YNACVDRDLAYRFWKNNRTLENKLIYNRFRNRATNLIRIAKKQYSAKLFDP
FT                 TLPSKTIWKNFKSLGFRDDPDNLDDKFKPEDVNNCFIQKIENYPTGNRQPT
FT                 IIPDIVEEDQFKFRAVTEDEVHKAILRIKSDAIGYDEIPLKFVKLFLDLLV
FT                 PYITLLYNKIISTNTFPTIYKLAIVKPIPKIKNPSNPNDLRPISILPSLSK
FT                 GCEILLKDQIVQYVTFKKLITPFQSGFREHHSTSTIITKVCQDINASFDSN
FT                 YVTVLILLDFTKAFDLIDHRIFIDKLKEQFQFSSDACDLMKSYLSDRSQLV
FT                 QINGVRSQFRSTKRGVPQGSVFGPLAYTLSVNDLPSFITHCNKQSFADDTQ
FT                 IYLSCPVDQLPNKISLINSDLSAISRYCKDNGLVLNTSKTKAIXFSRQNTV
FT                 LPHLPPIQIDNENVEIVDECLNLGIKMNKHLTWXDHVSLIKKKVYSTLRTL
FT                 NCHRHTLSIDTKIKLVHTLLMPHFIYGNVIFSKMNVDTERHLQVCFNSCIR
FT                 FIYNLRRFDHVSQFQRSIFDLSLSKFYQFQLLLFLFKLINFKEPQYLFESL
FT                 VFSRSNRTNNIIIPVHHTNFMGNSFAVRGARLWNDLPHNLKSITLFSEFKR
FT                 RCKEHLKNSI"
XX
SQ   Sequence 3316 BP; 1101 A; 569 C; 470 G; 1168 T; 8 other;
     ttgtttggat ttagatgata gtagatttgc ccagcagtac aggatttttt gttgttattg        60
     ttattttgtt tgtttaagsa gtttatctga aaaccaaaac agcactatta tcttttgttt       120
     tgccctgatt gctcttttcc tacgcgtgtt tttctctaca tagatttata tatttttatg       180
     actaatactg tgaacaacgt gcaagaactg cgatttgaac caatcaatgc aactctgaaa       240
     aataatcttt cgaaagaaaa tggatttaaa gttggtcatt taaacacatg ttctataatc       300
     tgtcatcacg atgatgttaa aaacattttc actcgaacag gatttgactg tataggtttt       360
     accgaaacat ggttgaattc tgatataaag gatgctctga ttaaattcga caattttgaa       420
     attctgagac atgatcgtaa ttctacaaca agagtgagwg gaggaggagt agcacttttt       480
     gtacgccctg aatacaaaac taaaattatt aaaacatccc caagagatag tattgaatat       540
     atgttttgtg aattaaaagt agtcagttgc aagttgtggt tggtgttatc tataaacccc       600
     caaccttgaw kgattttagt tttttctttg aggatcttgg taacatatct tcaacttata       660
     ataatattat tcttatgggt gatttcaata ttaatattct tgtctcaaat ccaatgtcaa       720
     acaactttac tcgtcttata aatagctttt ctctctcaat agtcaacaaa tcatttccaa       780
     ctcattttca taacacaggt tcctcattgc ttgactattt catatgttca gaaaatctwc       840
     matctactct attctctcaa gtttctgttc cagccgtgtc acaccatgat cttatttaca       900
     ctgtttttaa tttacctgtt cctgttgcgt ctttaaaaac catatctttc agaaatttta       960
     atcgcattga taaggaagcc gttagaaatg attttccaaa ctttaatttt gatcagctta      1020
     atggaatagt ggattgcgaa actttggctt caaattttaa tcataaatta attcaactag      1080
     tgaacaagca tgcccctcta aaaacgaaaa caattctacc aacaagctgc ccatggtatt      1140
     ctagagaagc atataatgca tgtgtagatc gggatttagc ttaccgtttt tggaaaaaca      1200
     atagaactct tgaaaacaaa cttatttaca atcgttttcg aaatcgtgct acaaatctga      1260
     ttagaattgc aaaaaaacag tattctgcta aattatttga tccaaccttg ccatccaaaa      1320
     caatttggaa aaactttaaa agtcttggat ttagggacga cccagataac cttgacgata      1380
     aatttaaacc tgaagatgtt aataactgtt ttatccaaaa aattgagaac tatccaactg      1440
     gaaacagaca acctactatt attcctgata tcgttgaaga agaccaattc aaattccgag      1500
     ctgttactga agatgaagtc cataaagcta tacttagaat taaatctgat gcaatagggt      1560
     atgatgaaat tccacttaaa tttgttaaac tttttcttga tcttttggtt ccatacatta      1620
     cgcttttata caataaaatc atttctacaa atacctttcc aacaatatat aaactggcta      1680
     tagttaaacc gatacctaaa ataaaaaatc catctaatcc taacgatctg agacctattt      1740
     ctattttgcc atcattatca aaaggttgtg aaatcttgct gaaggatcaa atagttcaat      1800
     atgttacatt caaaaaactt atcacaccat ttcaatctgg ttttcgagaa caccatagta      1860
     catccaccat tattacaaaa gtttgccagg atataaatgc atcatttgat tctaactatg      1920
     ttacagtact tatcttattg gacttcacta aagcctttga tttgattgac cacagaatat      1980
     ttatagataa acttaaagaa caatttcaat tttctagtga tgcttgtgat cttatgaaaa      2040
     gctacctgag cgaccgttcg caattagttc aaattaacgg agtccgatct cagtttaggt      2100
     ccacaaaaag aggtgtaccg caaggatccg tttttggtcc gttggcgtat acattatccg      2160
     ttaacgattt gcctagtttt ataactcatt gtaataaaca atcttttgcc gatgatacac      2220
     agatttacct ttcttgccca gttgatcagc ttcctaacaa aatatctcta ataaactctg      2280
     atttatctgc tatttctcgt tactgtaagg ataatggact tgttttaaat acttcaaaaa      2340
     caaaagcaat awttttttcc cgtcagaata cagttcttcc tcacttacct cctattcaaa      2400
     tcgacaatga aaatgtagaa atagttgatg aatgcttgaa cttaggtatt aaaatgaaca      2460
     aacatcttac atgggakgat catgtatctc taataaagaa aaaggtctat tcaactcttc      2520
     gaactctaaa ttgccataga cacacattat caattgacac taaaataaag ctagtacaca      2580
     cactattaat gcctcatttc atttacggca atgttatatt ttctaaaatg aatgttgaca      2640
     ctgaaagaca cctacaagtt tgcttcaaca gttgtatccg tttcatctac aatttaagga      2700
     gattcgatca tgtttcacaa tttcaaaggt caatttttga tttgtctttg agcaagttct      2760
     atcagtttca attgttgtta tttttattca aacttataaa tttcaaagag ccgcaatatc      2820
     ttttcgaaag tttagttttc agtcgttcaa atcgcacaaa taatattata ataccagttc      2880
     accacactaa ctttatggga aattcattcg cagttcgagg cgcacgtttg tggaatgatt      2940
     tgccgcataa cttaaaatct ataactttat ttagtgaatt caagcgtagg tgtaaagagc      3000
     atttaaaaaa ttcaatttga gttttgtttt ggtttttgat taagcaatgc cttgtattac      3060
     acactctttt ataactacat acacagctga taatcagtct taaatttatt actgaattct      3120
     acttaaacaa gtaatttgtc gtattatcga catttttata tctttagctt atttcgtttt      3180
     agtttttaat ttagttgtta gtttttagtt ttaatgaaac ataaggtcct tatcatttaa      3240
     gtcaatgtat acaaaaaagg ttgtaccttc ggtatattgt tgaaaaataa aatacaaata      3300
     caaatacaaa tacaat                                                      3316
//
ID   Kiri-5_DK   repbase;    DNA;    INV; 1804 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1804
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1349-1349 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1290
FT                 /product="Kiri-5_DK_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="SVAPCDNIFNFVCVSQCDVLDCILKVKSNAEGLDNIN
FT                 PKFLKLLLPCLLPYVTYIFNSILTQSSFPTAWKLAKILPIPKQNNEYRPIS
FT                 ILPFLSKVFENVLAGQIQGFLDRNLLLHNKQSGFRRKRSCLTAITDITEDI
FT                 RQQLDKNHVTILTLLDHSKAFDSVNHNILCTKLKNLFNFSDSSVRLIASYL
FT                 TDRLQAVVAGAVTSAVKKLTRGIPQGSVLGPLLFAIYVNDLPNVLSDCEVH
FT                 LYADDVQIYVSSPVREINVCISTCNRMLSLVQTWAEHNGLSINPKKSKSIL
FT                 ISRRPIDTNDLTKPIINNIPISYVDHAVNLGLTFNNTLSWGNHISKATGRV
FT                 YGILRQLANTRNFLPEHIRLLISKTILIPTLFYGIEIFGFCDTRDTRKLVT
FT                 ALNSIVRYVFNLNRFDHVSHLTTKLLDLNLNSWINL"
XX
SQ   Sequence 1804 BP; 627 A; 353 C; 277 G; 547 T; 0 other;
     agcgtagccc cctgtgataa tatatttaac tttgtgtgtg ttagccaatg tgatgtcctt        60
     gattgtatac ttaaagttaa gtctaatgcg gaaggtctag acaacataaa tcctaaattt       120
     ctgaaattat tgttaccatg tctactgccc tatgttacgt atatttttaa ctctattctt       180
     acacagtcct cattcccaac cgcgtggaaa ttggctaaaa tactaccgat tcctaaacaa       240
     aacaatgagt acagaccgat ctccattttg ccatttcttt caaaagtgtt cgaaaacgta       300
     ctagccggtc agatacaagg tttcctggat agaaacctcc tcctacataa taagcaatct       360
     ggctttcgta ggaagagaag ctgtttaaca gcaataacgg acatcacaga ggacatcaga       420
     caacaacttg acaaaaacca tgttacaatc ttgacgctac ttgaccatag taaggctttt       480
     gactccgtga atcacaatat tctttgtacc aagctaaaaa acctatttaa cttttcggat       540
     tcctcagtta gactgattgc gtcttatctt actgatagac ttcaagcagt tgtagcaggg       600
     gcggtgacct ccgccgtaaa aaaactgact cgtggcattc ctcagggatc agtccttggc       660
     ccattactgt ttgcaatata tgtcaatgat ttaccaaatg tcctgtccga ttgtgaagtt       720
     catttgtatg ccgatgatgt ccagatttat gtcagtagtc ctgttcgtga aataaatgta       780
     tgtataagta cttgtaacag aatgttgtcc ttagtgcaaa cgtgggctga acataacggc       840
     ttgagtataa accccaaaaa atcaaaatct attttaatta gtcgcaggcc aattgataca       900
     aatgacctta caaaaccaat aataaataat atacctataa gctatgtcga tcatgcagtt       960
     aatctgggac taacgttcaa caacaccctg tcttggggca atcacatatc gaaagcaacc      1020
     ggtcgagtct atggtatctt gcgtcaattg gcaaatacca gaaacttttt acccgaacac      1080
     ataagactcc tgatttctaa aaccattctg attcccaccc tgttttatgg tatagaaata      1140
     tttgggtttt gcgacacacg ggacacgaga aaattagtca cagccttaaa ttctattgtt      1200
     cgttatgtgt ttaatttaaa tcgttttgac catgtatcac acttgactac taaactactt      1260
     gacttaaact taaactcctg gattaatctt tagagccctt tcatttttcc acaaaatagt      1320
     gacaacccat gagccttctt acttgtttaa taaattaata ccggcagcct cgcaaaggac      1380
     taaaaatttt atatgccctc gagtccaaat gctcaactcc gagaggcagt tctttgtcaa      1440
     cgctatccgt ctatggaacc aattacccca tgaacttaaa actattagga atgcaactca      1500
     atttaattcc aaagtaaaac tatttttaag aaacaacgca taacaaacaa ataaacaaac      1560
     agcaaacttc atattaatac gtaattaaag atataaaaat aaataaaata aaataaaata      1620
     aaataaaaat aactaaaaat aataatataa aataaaataa ataaataatt agttcatata      1680
     ataattaatg tactaggtat taagtagaaa tcctgtctaa ttttaactca agtgaccagg      1740
     gcattaataa taagtatttt atacttgtag cactgggcta attttgtcaa aataaataaa      1800
     taaa                                                                   1804
//
ID   Kiri-5_DTa  repbase;    DNA;    INV; 4419 BP.
XX
AC   .
XX
DT   10-DEC-2012 (Rel. 19.10, Created)
DT   10-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4419
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2827-2827 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(282..1262,1150..1413)
FT                 /product="Kiri-5_DTa_1p"
FT                 /translation="YNESATLXTKQTHXLNMPTSSNKRLRKDTGAAQDRLS
FT                 DASSTELLDLMKVRFLEQTETIAGLVKDAEKRILKSLSERLDSIAGEVKET
FT                 GARVSNLEREVVELRAQRDQLFERVEHLHREVXDMRAMRERVGSVEAKLAA
FT                 XNIANNASDLRIHGVPYVEGENLRSMFHQLCFALHMTPPPRVRDIFRARKT
FT                 QKTNVDPVVIVKMENVREKIAVLRVIAAYRREAKTQLTLKLLGCNSDAVVY
FT                 VNEQLQRXNYLIFKEAMRLKKMKILSAVFTRRGLVHVRCNGSESVQCIDNS
FT                 DELKKLAALPLSSSLAENHAVDSDYGPAASESFRSITQMSSRSWLLFLSLL
FT                 RWPKTMQWTLITGLLPRRAFALKYTCIYVCNVINLVIDRGFKYIRFALFLF
FT                 FKLIFTAEFATLKCYYINNDG"
FT   CDS           join(1406..2527,2494..4179)
FT                 /product="Kiri-5_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="MTANTEGSTVGSMIKILSNYKRGLKIVHINAQSLFKK
FT                 IDEFRLLFVQSNVDVICVSETWFTSXLSDLLIECDGYVLFRSDRVGHAGGV
FT                 AIFVKCTLNCRVKCKQPRDSEIEYIFLEISNKFMRNKVLVGCIYRPNRTID
FT                 FDPLMETISELSAAYEDIILAGDFNSNILCENHLIDNFETLGLYAVNKSTP
FT                 THFSNSCDTLLDLFFINDTRKILHYDQISAPAFSKHDLIFLTCDITLDYAE
FT                 KSFSYRDYKNINYMELQREYTACNWCPIYQCPSVECQLNVLNNNIQYIFNK
FT                 CVPIRSKIIKPRQNPWFTNEIKKQLYLRDVAYFKWKRYRTQHYSMQYREAR
FT                 SRVTKMIKDAKCEHFNSKFENNPSIKKHGRTKQSINKKTWKDINNLGIGKC
FT                 RLSADHNVDVEELCRTFTQLDVPEATSNQYLNNTTYCDNSFSFVCVDQGDV
FT                 LDGILKIKSSAEGLDNVNPKFLKIMLPLLLPHITKIFNTAITTSTFPSTWK
FT                 KAKIIPVLKANKEYRPISILPFLAKVLENLMSLQIQNFLEKNSLLSEKQSG
FT                 FRKKRSCVSAITNIVEDIRKQLDNNYVTFLTLLDHSKAFDSVNHGILITKL
FT                 KSLFNFSSTALRLIESYLDGRMQAVVAGSQISSFSLLTRGVPQGSVLGPLL
FT                 FSMYVNDLPSLLSDCEVHLYADDVQIYVSSPINQLNVCVRSSNKMLQVIEK
FT                 WASENGLSINPKKSKCVVIAKRPIDTTSIQNLVINNMPIQFEEYAHNLGIT
FT                 FSNTLSWSKHISKATGRTYGLLRQLTYSKTFLPFQIRLLVAKVILVPTLFY
FT                 GVEVFGHCDTRDMQKLVVAFNSIIRYVFNLNRLDHVSHLTNKILDLNLTSW
FT                 INYRTLIYFHKIVITQEPSYLYNKLISATSTRTNNFICPRYNTLCSNRQFY
FT                 VNAIRLWNSLPHNYKTIRSATQFKSKIKEHFK"
XX
SQ   Sequence 4419 BP; 1454 A; 824 C; 837 G; 1293 T; 11 other;
     gaamcaaacc aacgaacggc tgtgttttac atcggtccgc ttttgattca tttaaagcca        60
     cgaacaacta cttaaataaa tatatttttt ttgcgtcaat agcaaaataa acctatccgc       120
     acaatataac cgcatcgtga tagagttttt aagcaaaact taaaccaaaa ttctaaattg       180
     aaactaaata aacaacgctt tgcagttgtg tgtgtttgaa agtctgcggc cktcaaacca       240
     tttcatcgaa cttctkcgca cacacaaacg cacttatcta atacaacgaa tccgctacac       300
     tgaamacaaa acaaacacac wttttaaaca tgccgacgtc atccaacaaa cgcctacgga       360
     aagacactgg agctgcacaa gaccgcctgt ccgatgcctc ttcaacagag ctcttggatc       420
     tgatgaaggt ccgttttctg gagcagaccg aaacaattgc cggcctagtg aaagatgcag       480
     agaagcgaat cctcaaaagc ctctcggaac gcctggattc wattgcgggt gaggtcaaag       540
     aaacaggcgc wagggtgtcc aacttggagc gggaggtagt ggagctgcgt gcgcaacggg       600
     atcagctatt cgagcgtgtt gaacacttgc atcgggaggt ckcggacatg cgtgcaatga       660
     gagagagagt ggggagcgta gaggcaaaac tggccgccca waacattgcc aataatgcgt       720
     ccgacctacg catccatggg gtcccctacg tggaagggga aaacttacga tcgatgttcc       780
     accaactctg cttcgcacta cacatgactc ctccgccacg ggtgcgggat attttccgag       840
     cccgcaaaac acaaaaaacc aatgtcgacc cggttgttat tgttaaaatg gaaaatgtgc       900
     gagaaaaaat cgcggtgcta agagtaatcg cggcatatcg acgtgaagca aaaacacaac       960
     tgaccttaaa gcttttgggt tgtaactctg atgcggtggt ttacgtcaat gagcagttac      1020
     agagagawaa ttatctgatc tttaaagagg caatgcgact gaaaaagatg aagatcttaa      1080
     gcgccgtttt cacacgccgt ggtctcgtgc atgtccgatg caatgggagc gagagcgtac      1140
     agtgcataga taactcagat gagctcaaga agctggctgc tcttcctctc tcttcttcgc      1200
     tggccgaaaa ccatgcagtg gactctgatt acgggcctgc tgcctcggag agctttcgct      1260
     cttaaatata cttgtatcta tgtttgtaat gtcataaatt tagtgataga taggggattt      1320
     aagtatataa gatttgcttt gtttttgttc tttaaactaa tttttactgc tgagtttgcg      1380
     accctaaaat gttattatat aaacaatgac ggctaacaca gaaggttcca ctgttggtag      1440
     catgataaaa atactaagta attataaaag gggtcttaaa attgttcaca taaatgcaca      1500
     gagcctgttt aagaaaatcg atgagttcag gttacttttt gttcaatcta atgttgatgt      1560
     gatatgcgta tctgagacct ggtttacgtc tmatttgtct gatttgctga tcgagtgtga      1620
     tggttatgtt ttgtttcgtt cagaccgtgt aggccacgct ggtggtgtcg ctatatttgt      1680
     taagtgtaca ctaaattgta gggttaaatg taaacaacca agagacagtg aaattgagta      1740
     tatttttctg gaaatatcga acaaatttat gagaaataaa gtgctggttg gttgtatata      1800
     ccgtccaaat cgcacaatag actttgatcc attgatggag accataagcg agctgtctgc      1860
     tgcatacgaa gacattattc ttgccggaga ttttaacagc aatattttat gcgaaaacca      1920
     tttaatagat aactttgaga cgttgggtct gtacgctgtt aataaatcta cgccaacaca      1980
     ctttagtaac tcctgtgata ctttacttga cttatttttt attaatgaca ctagaaagat      2040
     tttacattat gaccagatct ctgcaccagc tttttctaag catgatctca tttttttaac      2100
     ctgtgatatt acccttgact atgctgagaa atcgtttagt tatagagatt ataagaatat      2160
     taattacatg gaacttcaac gtgaatatac tgcttgtaat tggtgtccta tatatcaatg      2220
     tccaagtgtc gagtgtcaat taaatgtctt aaataataat atacagtata tttttaacaa      2280
     atgcgtaccg atcaggtcta aaataatcaa gcctagacaa aatccctggt ttactaatga      2340
     aatcaagaag caactttatt tgcgggatgt ggcgtatttt aaatggaagc gatacagaac      2400
     ccaacattac agtatgcagt accgggaggc aagatcgcga gtcacaaaaa tgattaagga      2460
     tgctaagtgt gaacatttta attcgaaatt tgaaaacaat ccatcaataa aaaaacatgg      2520
     aaggacataa acaacttagg aatagggaag tgtaggctga gtgctgatca caatgttgat      2580
     gtcgaggaac tctgtcgtac gtttactcag ctcgatgtac ctgaagcaac ttccaaccag      2640
     tacctgaata atactactta ctgtgataat agttttagct ttgtgtgcgt cgatcaaggt      2700
     gatgttttag acggtattct caaaattaag tcaagtgctg aaggtttaga caatgttaac      2760
     ccaaaattcc taaaaattat gttaccttta ctcctcccac atattaccaa gatttttaac      2820
     actgcgatta cgacctccac ttttccttca acatggaaaa aagccaagat aattccagta      2880
     ctaaaagcaa ataaagagta taggcctatt tctatcctac catttttagc aaaggttctt      2940
     gaaaatttaa tgtcactaca aattcaaaat tttctagaaa aaaactcgtt attatcagaa      3000
     aaacaatctg gtttcagaaa aaagagaagc tgtgtaagtg caataacgaa tatcgttgaa      3060
     gacatacgta aacaacttga caataattat gtgacttttt taacccttct ggaccacagc      3120
     aaagcatttg actctgtaaa ccacggtatt ttaattacaa aactaaagag tctttttaac      3180
     ttttcaagta ctgcacttcg ccttatagaa tcatatcttg atgggaggat gcaggcagtt      3240
     gttgcgggaa gtcagatttc tagcttcagc ctacttactc gtggagttcc ccaaggatct      3300
     gtcctgggac cattattgtt ttctatgtac gtgaatgatt tacctagtct tttgtccgat      3360
     tgtgaagttc acctgtatgc agatgatgta caaatctatg ttagtagtcc aattaatcag      3420
     ttaaatgttt gtgttagatc tagtaataaa atgcttcaag taattgaaaa atgggcgagc      3480
     gaaaatggct tgagtataaa cccaaaaaaa tccaagtgtg tagtgatcgc taagagacca      3540
     atcgatacca caagtattca aaacttagta atcaacaaca tgccgataca atttgaggag      3600
     tacgcacata atttaggtat tacgttcagc aacacactta gctggagtaa acacatatcg      3660
     aaggctacag gtcgaaccta cggcttattg cgccagctta catactccaa aacattccta      3720
     ccatttcaaa taaggctgtt agtagctaaa gtgattcttg ttccaacact attttatggt      3780
     gtggaagttt ttggacactg cgatacccgt gatatgcaaa agctggtagt agcctttaac      3840
     tctatcatca gatatgtttt taatttgaac cgtcttgacc atgtatcaca cttgactaat      3900
     aaaattctgg acctgaactt gacctcatgg attaactata ggactctaat atatttccat      3960
     aaaattgtga taacccaaga accttcatat ttgtataaca aacttatatc agctacatca      4020
     actagaacta ataacttcat atgcccgaga tataatacgc tatgctcgaa taggcagttt      4080
     tacgtaaatg ctatccgttt gtggaacagt ctaccacata attataaaac gattaggagc      4140
     gcaactcagt ttaaatctaa aattaaggaa catttcaagt aaaatagaaa caaaaacaaa      4200
     tcgtaaaatt aaactaaagt caaaataata ataattatca taaaatatta atcaatcccc      4260
     acgtaataat aataataata aaaaaattgt tagtaataag tattagcttt aagtcttttt      4320
     tgttcaaata agcttttcca attcaatgtg actagtgcta caaatataag tgtaaacttg      4380
     ctgtgctagg ataataataa taataataat aataaataa                             4419
//
ID   Kiri-5_HMM  repbase;    DNA;    INV; 2741 BP.
XX
AC   .
XX
DT   20-FEB-2013 (Rel. 19.10, Created)
DT   20-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2741
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2807-2807 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..635,530..2362)
FT                 /product="Kiri-5_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="IIKNDWRAKRLKNIVNSANLNLLPTATHFFPNTIPSQ
FT                 LDLMIVSSHERVVTFGQLXAEAFSYHDLVYLTYKIRTPKIKPTVIMRRSFK
FT                 NFNNESFMKSLSQIDWDSVFNAPSTNDKINIFNSLLIELFDIYAPLRPVKL
FT                 KHLPAPWLTDDIKKLMAKRNSAKSKYKRNCTEENLIRFKHYGIDVVRLAEM
FT                 HNVNLSIPLLKITALLKCGNSVQTLRNRCSKTCRDAQRKFIHSTIENNSPA
FT                 KVWKFLDAMGIGRTRKTINISDKINLDEINKHFSNVNLLNQEIKADTIKSI
FT                 SDISCPSPFYFSSVSTDDVKKHVLAIKSDATGSDQISRKMILLTLNPVLPV
FT                 LCHIFNHSLSSNSFPNTWRQAIVTPIPKVPNPLSFSDYRPISVLPFLSKVL
FT                 ERIVHHQLSSFLALNKILSPFQSGFRPGHSTVTALNKVNDDIRLGIDNQQI
FT                 TILVLLDFSNAFNTVDFDILLAILKSINVSSDAIEWFYSYLHEREQTVRIN
FT                 DQRSSVCRLSAGVPQGGVLSPLLFSIFINSVTKLLSLSFHLYADDLQIYLT
FT                 ADVNDIAKAIDLVNSNLHTISTWSKSFGLAINPKKSQVCFLGSRQQIAKLN
FT                 FPSYPHITLDNCKLEYSNTVKNLGIKVDSTLSWAPHISELSRKMYYTIGRL
FT                 KRWKNLLPIQTKISLAHSLLLPILDYADTCYLDISQQLLNTLERLQNLVIR
FT                 FIFGLRKFDHISQYRVRLRWLSVENRRNLHTVTLLYSILFHPDTPSYLKER
FT                 FSFLGSNSCIPSSLRSKRDNVLEFPQCRTHCYSKSFTVEAVKLWNALPRDV
FT                 RRSTSINIFKRKVKNHYLRM"
XX
SQ   Sequence 2741 BP; 769 A; 619 C; 440 G; 910 T; 3 other;
     gcataattaa aaatgactgg cgtgctaaac gacttaaaaa tatagtgaat agtgcaaacc        60
     tcaaccttct tcctactgct acccattttt tcccaaacac tattccttca caactggact       120
     taatgatcgt gtcttctcat gaacgtgtcg tcactttcgg ccaactgtgw gccgaagcct       180
     tttcttatca tgatctcgta tacttaacct ataagattcg cacaccaaaa atcaagccca       240
     cggttatcat gcgtagaagc ttcaagaact tcaataatga gagtttcatg aaaagcttaa       300
     gccagatcga ttgggatagt gtkttcaatg ctccaagtac caatgacaaa attaacatat       360
     ttaactctct tcttattgaa ctttttgata tttatgctcc tcttagaccc gtaaaactta       420
     aacatctccc cgctccgtgg cttacagacg atatcaagaa actcatggca aagaggaact       480
     ctgctaagtc taaatacaaa agaaattgca ctgaagaaaa ccttattagg ttcaaacact       540
     acggaatcga tgtagtaaga cttgcagaga tgcacaacgt aaatttatcc attccactat       600
     tgaaaataac agccctgcta aagtgtggaa attcctagat gcaatgggta ttggacgcac       660
     acggaaaact attaatataa gcgataaaat aaatcttgat gaaattaaca aacacttttc       720
     aaatgttaac ttactgaacc aagaaattaa agcsgacact attaagtcaa tttccgatat       780
     ctcctgccct tctccttttt atttctcctc tgtttctact gatgacgtga agaagcatgt       840
     gctggccatt aaatccgatg ctactggtag tgatcaaatc agtcggaaga tgattctctt       900
     aactctcaac cctgtactcc ctgtcttatg ccacatcttt aatcattccc tttcctcaaa       960
     ctcttttccc aatacctggc gccaagctat agtaactcct attcctaagg tacctaatcc      1020
     tttatctttt tctgactatc gccctatctc cgttctccca tttttgtcaa aggtgttaga      1080
     gcgtatagtc catcatcaac tttcatcctt cttagcttta aataaaatcc tatccccctt      1140
     ccagtctgga tttcgccctg ggcacagcac ggttacggca ttaaataaag taaatgacga      1200
     cattaggttg ggtatcgata atcaacaaat tactattctt gtactgctgg acttttcgaa      1260
     tgcttttaac actgttgatt ttgatatcct cttagcaatt cttaagtcca ttaatgtatc      1320
     ctctgatgct attgaatggt tttactccta tctacatgaa cgagagcaaa ctgttcgtat      1380
     taacgatcag cgatcatccg tatgtcgtct tagtgctggg gttccgcagg gtggcgtcct      1440
     ttctcctctc cttttttcca ttttcattaa ctccgttacc aagctcctat ccctttcctt      1500
     ccatttatac gccgatgacc tgcaaattta tttgaccgcg gacgtgaatg acattgcgaa      1560
     agctattgat ctagtaaatt ccaacctgca tacaatcagt acctggagca agtcatttgg      1620
     tttggcaata aatcccaaaa agtcacaggt gtgtttccta ggcagtcgcc aacaaatagc      1680
     taaattaaat ttcccttcct atcctcatat tacccttgac aattgtaagc tggaatacag      1740
     taacactgtt aaaaatctgg gtatcaaggt ggacagcact ctctcctggg ctcctcacat      1800
     ctctgagctg agtcgtaaga tgtactacac tattggtagg ctaaagagat ggaaaaatct      1860
     cttgcccata caaaccaaga tctccctggc gcactcactc ttgctgccta tattagacta      1920
     tgctgacacc tgttatctgg acatttcgca acaattgctc aatacacttg aacgcctaca      1980
     aaacctggtt attagattca tcttcggact gaggaaattt gatcacatca gccagtatcg      2040
     tgttaggctg cggtggcttt ctgtagaaaa ccgtcggaac ctccacactg tcacgctcct      2100
     ctattccatc ctttttcatc ccgatactcc ttcctacctt aaggaacgct tttccttcct      2160
     tggctctaac tcctgtattc cttccagtct ccgctcgaaa cgtgataacg tgctcgagtt      2220
     cccgcagtgc cgcactcact gctacagtaa atcttttact gtagaagcag tgaaattatg      2280
     gaatgcgtta ccacgcgacg tgagacggtc tacgtctata aatatcttta agcgtaaagt      2340
     taagaatcat tatcttcgga tgtagtatat gtatacctat ttgtatcttt atcatttatg      2400
     ttatcttatt ttctctttcc caattatata tatatatatt taatgtatat gtgtatgtat      2460
     attatctata tatttatgta tgtgtattgt atatatatgt atatctatat gtatgtatct      2520
     atatgtatta tgtattgtat gtacaggtta tatatttatt aagtttactt aaggtttgca      2580
     ccacattttg ccctctctct tagatgtcct atccttggat tggttgcctg gaagagatca      2640
     cttttagtga taaggccgcc tttgtgcatt ttatgtccca aaattgtact tgtaattctt      2700
     gtaaatgtgc aataaagact ttttatctta tcttatctta t                          2741
//
ID   Kiri-5_LMi  repbase;    DNA;    INV; 2862 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 19.11, Created)
DT   08-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2862
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3158-3158 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(524..1015,1098..2267,2271..2393,2397..2525,
FT                 2476..2775)
FT                 /product="Kiri-5_LMi_1p"
FT                 /translation="MMNSRDAAHRRFKASTKPEHYEEYRKLRNKVKQCIRN
FT                 AKIRYARSFVCSNTNPATLWKNLRSLGVGKATPESVFQISADELNEFFSAP
FT                 INCQAQINNRPEESPSHITNDDTFHLKHVTINTTRKAIMRISSEAIGNDGI
FT                 SITMIKNVADSLLPVLTDIYLISLSFSANQHIACVSKALEYIVHDQITEHL
FT                 CKFSLFDKYQSGFRKNHSTNTALIKVTDDLKFAMNNREATILTLLDFSKAF
FT                 DTVNFDILLNKMRQLKFSNSALKWFESYLKNRQQSVVCGNEKSSWRNVVSG
FT                 VPQGSVLGPLLFSLYVNDISSVLTFCKYHFYADDLQLYQSTRPEDINTAIA
FT                 QMNEDLSSVVTWAKNLGLKLNAKKSQVILVAHQKLISSELRDQLPPIQLDG
FT                 IPIPYQKTVKNLGVIIDEHLNWADNTVTVCRKTSACLYALKKFRNIFPQDV
FT                 KCKLVQSLVLPNLHYCDMIQHGTSSENTRRLELTMNACVRYICNIRRYDHI
FT                 SASYTQLGWLRPDKLRDYHTLCLLHRLLSEQHHSTSPQNLTIFRAIIILTQ
FT                 DPTYLVPLCPFIKRKHLQTPSLSLLFASGTSCPALFARFSLLLRLRKSNTS
FT                 LCHPLKTLAKTHVYSQVSLCVIVKPMLFSPLFLFLLFLSPNQCSSLRYFSS
FT                 SSFFHHNLLFRYISLCEYYYTHFSPPFPPLPPCPLLLAAIIKTFPYCNTCH
FT                 VSYLSNTNINCVYVLLLLVLIENFNFCRFSITSVILEM"
XX
SQ   Sequence 2862 BP; 915 A; 673 C; 488 G; 785 T; 1 other;
     atgtacatag tcagaagtgc tcaactgaac agcacatgtc ctcttctcaa tcggaattac        60
     agttactcac tatcaatatg acacgtcatc gtgatgggag accttaacat gacttgttaa       120
     gagacactcc atccacaata aactaagaga ttgctccaac aacatgaaca ttctgccatt       180
     agaacctact caccatacgg agcacactct tatagatgtg atcgcaacga aaaagatcga       240
     caaagtacag atctaagtca aacgtcagcc cgcctctcag cacacgatgc agcgccaaaa       300
     gttaaatcac gttatattac tcgtagaaac gtgaaacaaa tagaccgtga ggctctaaca       360
     gccaactgct cagaaatctc atggcatcaa gtaaccagag aacccacgat tgatggaaaa       420
     atttttgaac ttagaataaa cttatttcct atatgacaag catgccccct acaatccgtg       480
     taagaaaacc cctgctccat ggctgactaa agaattacgt caaatgatga acagtaggga       540
     tgctgctcat agacgtttca aggcaagtac gaaacccgaa cattacgaag aatacagaaa       600
     gctacgaaac aaggtgaaac aatgcattcg aaatgccaaa ataaggtacg ctcgctcttt       660
     tgtgtgcagc aacactaacc cagcgaccct gtggaagaat ctccgtagct tgggtgtcgg       720
     aaaggctaca ccagaatctg tttttcagat ctcagctgac gaactgaatg aattcttctc       780
     cgcgccaatc aactgccaag cgcaaataaa caatcgccct gaagaatccc ctagccacat       840
     aactaacgat gacacattcc acctaaaaca tgtaacaata aatacaacaa gaaaagcaat       900
     aatgagaatc tcttctgaag cgataggcaa cgacggtatt agcataacta tgattaagaa       960
     tgtcgcagat agcctattac ctgtcttaac agatatatat ttaatttctc tctcgtgaat      1020
     ggaacttatc ctacctcttg gaaaagaagc atagtccgac ctatccctaa aatagaaaac      1080
     ccgaaatcac ctggtgattt tcggccaatc agcatattgc ctgcgtttcc aaagcccttg      1140
     aatacattgt tcatgaccaa attactgaac acttgtgcaa attcagctta tttgacaaat      1200
     atcagtctgg ctttcgtaaa aaccatagca caaacactgc actaatcaag gtaactgatg      1260
     acctgaaatt cgctatgaac aaccgcgaag ctactatatt gacactwcta gatttcagca      1320
     aagcttttga tactgtcaat tttgacatac tgctgaataa aatgcgacaa ctaaagttct      1380
     caaatagtgc actgaagtgg tttgaaagct acttaaaaaa tcgacagcaa agtgttgtct      1440
     gtgggaatga aaaatcctcc tggagaaatg ttgtttctgg agtgccacaa ggatcagttt      1500
     taggtccact tttgttctcc ttgtatgtca atgatatttc atcggttttg actttctgta      1560
     aatatcactt ctatgcagac gacctccagc tctaccaaag taccagacct gaagatataa      1620
     acactgcgat tgcccagatg aatgaggatc tgtcttcagt cgtaacatgg gcgaaaaacc      1680
     tgggactaaa attaaatgcc aaaaagtcgc aagtaatctt agtcgcccat cagaaattaa      1740
     taagttccga attacgcgac cagttacctc ccattcaact tgacggtatc ccaataccat      1800
     atcagaaaac agttaagaat ctgggtgtca ttatcgacga acatttaaat tgggcagata      1860
     ataccgtcac tgtatgcagg aagacctccg cctgcctcta cgcccttaaa aagtttcgta      1920
     acatctttcc acaagatgta aaatgcaaac tagtgcaatc actcgttcta ccaaaccttc      1980
     actattgtga tatgattcag catggtacaa gtagcgaaaa tacaagacgg ttagagttaa      2040
     caatgaatgc gtgtgtacgg tatatatgca acattcgtcg atatgaccat attagtgctt      2100
     catacaccca gttagggtgg ctacggccag acaaactacg ggactaccac acgctgtgcc      2160
     ttctccatcg actgctcagt gagcagcacc acagtacctc gcctcagaat ttaaccatct      2220
     ttcgtgccat cataatatta acacaagatc ccacttatct agtaccctag ctgtgcccgt      2280
     tcataaaacg aaaacatttg caaactcctt cgctgtctct gctgttcgcc tctggaacaa      2340
     gctgccctgc tctcttcgca cgattcagtc ttctgctacg tttaagaaaa agttgaaaca      2400
     cttccttatg tcaccctctt aaaactctcg ccaaaactca cgtatacagt caagtttctc      2460
     tctgtgtgat agtaaaacca atgctcttct ctccgttatt tctcttcctc ctctttcttt      2520
     caccataatc tgctcttccg ttatatctcc ttatgtgagt attattacac tcatttttct      2580
     ccccctttcc caccccttcc tccatgccca ttgctgctag cagccataat taaaaccttt      2640
     ccgtattgta atacttgcca tgtttcttat ttatcaaata cgaatataaa ctgtgtgtat      2700
     gtccttttgt tacttgtact gattgaaaat tttaattttt gtagatttag tataacttct      2760
     gtaatattgg aaatgtaaaa tatgtagaac gcctggttag gtgtaagaga gggcctgaag      2820
     gccctaatct tgccaggtta aataaatgag taaataaata aa                         2862
//
ID   Kiri-6_AAe  repbase;    DNA;    INV; 4747 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4747
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 701-701 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           310..1086
FT                 /product="Kiri-6_AAe_1p"
FT                 /translation="MGKTKTTLVPLTNETKSNPCKRSKEDLDSSDDHVETL
FT                 DDLLSRMQQMFNETNSKIEQSKCDLRSEIADLREEVQQFKQDCSNEVLRLT
FT                 ESVNTIRSNVRVNEERILASMRTNDLLLSGVPYKPNEDLSIYINKVSTALG
FT                 YVEHVMPLIHTKRLARLPIEAGASPPIVLQFAFKNVRDDFYQRYLSSRSLS
FT                 LNHLGFNVNKRIYVNENLTILARQVKAHAIKLKKSGKLHSVFTKDGFVFIK
FT                 RKPEDQAQLVLSVDSLEK"
FT   CDS           1754..4597
FT                 /product="Kiri-6_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLDDTVTSSSNVGVVCIPRIVMNCALLSDKLNICHIN
FT                 IQSICARQMSKFNELKLCISDSKLDIVCLTESWLSDSVDDELIAIDGYKLI
FT                 RNDRQYSRGGGICVYYRNGITCALLSKSELYVGMGHINITEFLFLEIRFKH
FT                 EKFLLGVVYNPPRNDCSEIMFRKLSDFALHYSKTIIVGDFNTNMLRPNERT
FT                 IRLGGVIENLGFQCVNEEPTHFQSNSSTLIDLMITNDPDFVLNFNQVSAPA
FT                 FSKHDIIFSSLNIARCSKDTSMRTFRDYYNINMTALSDATLNINWNLLYSI
FT                 TDPDLALNFFNNCLTELFNSFVPLRTAKPKKNPWFNDEICSAMIDRDISYA
FT                 HWKRTKNIIDFNNYKRLRNRVTHLINTAKSNYVSNHLASSNSNKDLWHKLK
FT                 QINVRSGSDHLVEVTNSANEINDYFGSNFTACDQNLSIIPSQYNNFSFSTV
FT                 VESDIVFAIKSIKSNAVGMDLIPLRFIKLLLPLIVSEIRYIFNLILTSSKY
FT                 PQAWKVAKIIPIKKKPRINCLENLRPISILCGLSKVFEKILKNQIFQFVES
FT                 FNLLSECQSGFRPAHSTTSAILKLNDDILKTIDRRGVAFLLMIDFSKAFDR
FT                 VSHVKLVNKLTTQFYFSRDASNLVRSYLSGRTQIVNINNTASQPIPILSGV
FT                 PQGSILGPLLFSIFINDLPSVLQYCNVLMFADDVQIYLSSAELSVASMSEL
FT                 INLDLKRLITWSQANFLPINAEKTKIMLISRSRSEHVLPNIYLGEDVIDYV
FT                 TEANLLGFVVQQNLEWDSHVNFQCKKIYMGLRQLRLSSSMLKFETKMQLFK
FT                 SLILPHFMYGAELLLNASARSLDRLRVALNCCVRYVFNLNGYSRVSHLQSQ
FT                 LLGCPFYEFAKLRSCLLLNKLVSRSSPAYLFEKLNRFQSARTRNFLIPNYN
FT                 TSHYGNTIFVRGIAYWNQLPNELKNVNSVDIFRRDCIAWFNRRI"
XX
SQ   Sequence 4747 BP; 1371 A; 871 C; 897 G; 1607 T; 1 other;
     gtttctgaag ggatgagctg gaatcgtgag tgagataatt ggtagtggct caatttgttt        60
     ttaacgcctg ttcagtgatt tttccgacca ccaacttstg tctgcccttt catcagatgt       120
     tgctgattta gtgttttatg gaatctaccc gtctaattac cagcctgtgt taaaatccaa       180
     ttttatattt ggctaagctt ctactggact cgccattgtt tgcgtagtcg tatatcaaca       240
     aaaggcactc acgaaagttc attccgctca tctggctcgg taagcaagag acggatccag       300
     tgtttcacta tgggcaaaac aaaaacaaca cttgttccac tgacgaacga gactaaatcc       360
     aatccgtgta agcggtcgaa ggaagatctc gattcctcgg atgatcacgt agaaacgcta       420
     gatgacctgc tttcccggat gcagcagatg ttcaacgaga caaactccaa gatcgagcaa       480
     agtaagtgtg acttgcggag tgaaattgca gatcttcgtg aggaagtaca gcagttcaag       540
     caagattgtt cgaacgaagt gttacgatta acggaatcag tcaatactat ccgctccaac       600
     gtccgagtca acgaagaacg aattttggca tcaatgagga ccaatgactt gctattatca       660
     ggagttccct acaaaccgaa tgaggatttg agcatctaca ttaacaaagt ctcaacggcc       720
     cttggctatg ttgagcatgt catgccactt attcacacca aacgcttggc acgtcttcca       780
     atagaagctg gagcttcccc accaatcgtg cttcaattcg ccttcaagaa cgttcgtgat       840
     gatttctacc agagatacct gtcttcgcgt agtttgtcgc tcaaccatct cggatttaac       900
     gtcaataagc gcatctacgt aaacgaaaat ctcaccatac ttgctcgtca ggtcaaggcg       960
     catgctatca aattgaagaa aagtggaaaa ctgcacagcg tgttcaccaa ggatggattc      1020
     gtcttcatca aaaggaaacc ggaagatcaa gcgcaattgg tgctgtcggt ggatagcctg      1080
     gaaaaataag aatacccttc catttacatg ctctctttcc ttcctaatag agtccatggt      1140
     tcctatccta gggttccaat gtcttcttcc tctcctgaaa gtcaagaagc cgaaatcata      1200
     cctatcctta ttagtttttg aatattccct tctcattatt cctatgtatc cgatccattt      1260
     acttccttgt tttcttccgt cctaaaagtt aatcgtcgat ggattaccat tgatcatcgg      1320
     atcaactcaa ctcaagactg acgttatact gcaacttcga ttggttctgc tgtctgttgt      1380
     gattacaccg aatgcttttg ctgctgctgt tattgctgtt gttgctgttg ttgctgggat      1440
     gatgatgctg taaaaccagg agatgatttc aaggctgcta cgtgcgtact ggaccctatg      1500
     ggcgtcgctt tggatgcagt gttggtgaat gtaattgtaa attattaatg aagactgtat      1560
     atttgaactt tatcaagttg agccattgct cttttgcgat tgttgttatt tttttcaatt      1620
     attttgagat attgatgagt agctaaattt agtgtaatgg agtttcactc acttttcttt      1680
     tttatttcta tttcctcctt cgtggccacg gaactaccgt cttgcattgt ttcgtatgta      1740
     actttttatt tcgatgttgg atgataccgt aacttcctct tcaaatgtag gtgttgtatg      1800
     tattcctcgt attgtgatga actgtgcttt gctttcggat aaactcaata tttgtcatat      1860
     caatattcaa agcatttgtg ctcgacaaat gagcaaattt aacgaattga aattgtgcat      1920
     tagtgatagt aaactagata tagtgtgctt aacagaatcg tggcttagcg acagtgttga      1980
     tgatgagtta atagctattg atggatataa actaattcgt aatgaccgac aatacagtcg      2040
     tggaggtgga atctgcgtgt attataggaa tggaattact tgtgctttgc tttctaaatc      2100
     tgagctttat gttggaatgg gccatattaa cattacagag tttctgtttt tagaaattcg      2160
     ttttaaacat gagaaatttt tgcttggtgt tgtatataat ccacctcgaa acgattgttc      2220
     cgaaattatg tttcgtaagt tgtcggattt tgcacttcat tactccaaaa cgatcatagt      2280
     tggcgatttt aacacgaaca tgttgagacc aaatgaacgg accattaggt taggaggtgt      2340
     tatagaaaat cttggttttc aatgtgtgaa tgaagaacct actcattttc aatcaaattc      2400
     gtctaccctt atcgatctta tgattacgaa tgatcctgat tttgtgctta attttaatca      2460
     ggtctcggca ccagcctttt ccaagcatga tatcattttt tcgtctctga atattgcacg      2520
     atgctcaaaa gatactagta tgcgaacctt tagagattac tataacatta atatgactgc      2580
     tctgagtgat gctaccttga atattaactg gaatctactt tatagtataa ctgatcctga      2640
     tcttgccttg aactttttca acaactgttt aacggaactt ttcaattctt ttgttccgtt      2700
     aagaactgct aagcccaaga aaaatccttg gtttaatgat gaaatttgta gtgcaatgat      2760
     agacagagat atttcttatg ctcattggaa acgtacgaag aatatcattg acttcaataa      2820
     ttataagcga ttgcgtaacc gagtgactca tttgattaat actgctaaat caaattatgt      2880
     atcaaatcac ctagcatctt ctaactcgaa taaagacttg tggcataaac taaagcagat      2940
     taatgtaaga agtggttctg accatttggt tgaagtgacg aatagcgcta atgaaataaa      3000
     tgactatttt ggttcgaatt ttactgcatg tgatcagaat ctgtctatca ttccttctca      3060
     gtataacaat tttagttttt caactgttgt ggagagtgat attgtatttg caatcaagtc      3120
     cattaagtcg aatgcagttg ggatggatct gattccacta cgttttataa aactgttgct      3180
     gcccttaata gtttctgaga ttcgttatat tttcaattta attttaacgt cctcaaagta      3240
     tccacaagcc tggaaagttg caaaaataat tcctattaag aaaaaaccta gaataaattg      3300
     tttggaaaat ttaagaccaa taagtattct ttgcggttta tcgaaagtgt ttgaaaaaat      3360
     tctgaaaaat caaattttcc aatttgtcga atcatttaat ttactcagtg aatgtcaatc      3420
     tggttttaga ccagcgcata gcactacatc tgcgattcta aaattaaatg acgatattct      3480
     taagacaatt gataggagag gtgtagcgtt tctattgatg atcgattttt caaaagcctt      3540
     tgatcgcgtc tcgcatgtta aacttgtcaa taagctaacc actcagtttt acttctcacg      3600
     agatgcatca aatttagtgc gatcttattt atctggtcga actcaaattg taaatattaa      3660
     taatacagct tcacaaccaa ttcctattct ttccggagtg cctcaagggt caatattagg      3720
     acctcttctt ttttcaatat ttattaacga tctcccatcc gtgttacaat attgcaacgt      3780
     cctcatgttt gccgatgacg ttcagatata tttaagttct gcagaacttt ctgttgcctc      3840
     gatgtctgaa ctaataaatt tggatctgaa acgtctgatt acttggtcac aggcaaattt      3900
     tcttcctata aatgcagaaa aaaccaaaat tatgcttatt tcaagatcta gatcggagca      3960
     tgtcttacct aacatctatt tgggagaaga tgtcattgat tatgtgacgg aagccaatct      4020
     acttggtttt gtcgtacaac agaatcttga atgggattct catgtaaatt tccaatgtaa      4080
     gaaaatctac atgggccttc gccagcttag gttatcttcg agcatgctta aatttgaaac      4140
     aaaaatgcag ttgttcaaga gccttatttt gcctcatttt atgtatgggg cggaacttct      4200
     gttaaatgct tcggcgaggt ccttggatcg tttgagagta gctctcaatt gctgtgtacg      4260
     ctatgtattc aacctgaatg gttactctag agttagccat ctacagtcac agctattagg      4320
     ttgtcctttc tacgagtttg ctaagcttcg ttcctgtttg cttttaaata aattagttag      4380
     tagatcttct ccagcatatt tgtttgaaaa gttgaatcgc tttcaaagtg caagaactcg      4440
     taactttctt attcctaatt ataacacatc tcattacggt aacaccatat ttgtaagagg      4500
     aatcgcttac tggaatcagc taccaaatga attaaagaat gtaaattccg tggatatttt      4560
     ccggcgagac tgtattgcgt ggtttaatag gaggatttag aatttttgtt agtgtaatgt      4620
     ttaagttttt tttttataat taagtagttg atgaattctg atggactcaa cttatgtagt      4680
     aatttaaaag gggcagccct tactctacag atttatgaat caataaataa ataaataaat      4740
     aaataaa                                                                4747
//
ID   Kiri-6_CQ   repbase;    DNA;    INV; 2457 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2457
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 125-125 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >94%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2332
FT                 /product="Kiri-6_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="ALHRIHAAFNLTVLHTGPTRITDTSSTTIDLLITDGP
FT                 QHIKKAKAASVSSVSDHEVVYLVADIRVPRTCQRTIRARNFRNIDQLQLQA
FT                 DFQAKDLRRLFESVDINEKATVLNLELNTLLEVHAPERTITIRDERTPWIT
FT                 QQIKAAVGLRNLALNLYARNPNRRRGDNQWLDYERKRDRASSLIFAAKKRY
FT                 AELHFAHDLPAKKLWSNLKREGIHNTTKQSSSSADINADELNTFFSDGHRR
FT                 LGNAATPSHRNAPAEPSHRTAVDHGANGFSFRHTSVEEICRKIFEIDTNAT
FT                 GTDGIPISFLKMLCPFILPVLCHLFDAIIETRTFPALWKTAIVTPIPKTSN
FT                 PVLPKDYRPISVLPAVSKVLEKILLNQITEHLDNPNNPLLARNQSGYRKGY
FT                 GTTTALAKVTHDIYGNLDAGRCTVMVLVDFSLAFNCVDHQLLAAKLNREFR
FT                 FSRPACELVSSFLGERKQSVRHGNVVSAVREVTDGTPQGSCLSALLFSLYI
FT                 NSLPASLKCNYQLYADDLQIYVSGEIDEVDRLIGTINMDLEAITHWATENR
FT                 LHPNPKKTQAIVFSRSGRVVPQSDIVFKGEVVPVAEKVTNLGLEMDSAMSW
FT                 THQVNSVVQKAYNTLRTFRRFSGVLTGATKRKLVQAVIVPIFTYGDIVYYS
FT                 GLTAALKQQLHRCFKSAVRFVYNLRRRDSTAAVRHSILGHDLPDNYNLRTC
FT                 CFIKRGYDGNLPEYLQEHLVHGQHQRTRSLIVPRHTASSGKSIMIAGVTLW
FT                 NNLPIEAKMIPTLSSFKSALKRSFQN"
XX
SQ   Sequence 2457 BP; 639 A; 702 C; 579 G; 534 T; 3 other;
     cgcmctccac cgtattcacg ctgccttcaa tctcacggtt ctccacaccg gccctactcg        60
     watcaccgat acatcgtcwa ccacgattga cctcctgatt acggatggcc cccagcacat       120
     caagaaggcg aaagcggcat cggttagcag cgtctccgat cacgaagtcg tttacctggt       180
     tgccgacatt cgggtacctc gcacgtgtca gcggacgatt cgtgcacgaa attttcgaaa       240
     catcgaccag ttgcagctgc aagcggactt ccaggcaaag gatctccgtc gactttttga       300
     gtcggtggac ataaacgaga aggctacggt gttgaatttg gagctgaaca ccctgctcga       360
     agtgcacgcc cctgaacgaa ccatcacaat ccgagatgag cgaactccgt ggattaccca       420
     gcagatcaag gcagccgtcg ggttgagaaa cctggccctc aatctctacg cacgaaaccc       480
     gaacagaaga agaggcgaca accagtggct cgactacgaa cgcaaacgcg accgtgcgag       540
     ctcccttatc ttcgcagcaa agaagcgtta tgcagaactc cacttcgctc acgatcttcc       600
     ggcaaagaaa ctttggtcca atctgaagag agagggtatc cacaacacga cgaaacagag       660
     ctcatcgtca gcagatataa atgcagacga gttgaacacc ttcttttccg acggacaccg       720
     ccgtctggga aacgccgcaa cccccagcca ccgcaacgcg ccagcagaac catctcacag       780
     aacagcggtt gatcacggtg cgaacgggtt cagttttcgc cataccagcg tggaggaaat       840
     ctgcaggaag atcttcgaga tcgacacgaa cgcaaccgga acagatggta tcccaatttc       900
     gttcctgaag atgctgtgcc cgttcattct gccagtactc tgccatctgt tcgacgccat       960
     catcgaaact cggactttcc ctgcgctgtg gaaaacggcg attgtcaccc ccatcccgaa      1020
     aacgtccaac ccagttctgc caaaagatta ccgccctatc agtgttctgc ccgctgtttc      1080
     caaagtgctg gaaaagatcc tgctcaacca gatcaccgaa cacctggata accccaacaa      1140
     ccccctacta gcgcgcaacc aatccggcta cagaaagggc tacggaacaa caactgctct      1200
     ggcaaaggtc acccacgaca tctacggcaa cctggatgcc ggacgctgta ccgtcatggt      1260
     gctggtggat ttttcgctgg cctttaactg cgtggatcat cagctgttag ccgcgaagct      1320
     caaccgagag ttccggttct ccagacctgc ttgtgagctg gtttcgtcgt tcctgggaga      1380
     gagaaagcaa tcggtccggc atggaaacgt ggtgtctgcg gtgcgggagg ttacagatgg      1440
     tactccacag gggtcctgtc tgagtgctct tctcttcagt ctgtacatca acagcctacc      1500
     tgcctctctg aagtgcaact accagctcta cgcagacgac cttcaaatct atgtttctgg      1560
     agaaatcgac gaagtagaca gactgatcgg aaccatcaac atggacctcg aggcaatcac      1620
     gcactgggct actgagaatc gactgcaccc aaacccgaaa aaaacccagg ccatcgtctt      1680
     cagtagatct ggtagagttg tgccgcaatc ggatatcgtc ttcaagggtg aagttgtgcc      1740
     tgtcgcagag aaggttacga acctgggact ggagatggac agcgccatgt cgtggacgca      1800
     ccaagtgaac agtgtcgtcc aaaaggccta caacactctg cggaccttcc gacgattctc      1860
     tggagtcctc actggtgcca caaagcggaa gctggttcag gcagtaatag tacctatttt      1920
     cacctatggt gatatagtgt actacagtgg gctcactgcc gcacttaaac aacaactaca      1980
     ccggtgcttc aagtctgcgg tacggttcgt gtacaatctt cgtcgccgag actcaacagc      2040
     agctgtaagg cattcaattc ttggacacga ccttcccgac aactacaacc tgcggacgtg      2100
     ctgtttcatc aaacgcggat acgacggcaa cctgcccgaa taccttcagg aacacctggt      2160
     tcacggacaa caccagcgca cgcggtcgct aattgtccca aggcacacag catcaagcgg      2220
     aaagagcatc atgattgccg gcgttaccct atggaacaac ctgccgatcg aggcgaagat      2280
     gataccaaca ctatcgtctt tcaaaagtgc tctgaaacga tcatttcaaa attagttatt      2340
     aggccttctg caatttgttt gattttatct ttggatcttt tataacctcc tgttgtttct      2400
     tccttgactt gatttaaagt gttatgctaa caagttgacg tgcccaataa aacaaca         2457
//
ID   Kiri-6_DK   repbase;    DNA;    INV; 4555 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-6_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4555
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1350-1350 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           329..1273
FT                 /product="Kiri-6_DK_1p"
FT                 /translation="MSTSTASKRLRSNAGTANDRLSDAPSSQILDLLKVRF
FT                 QEQTDEITAFVRETEKRILSILSDRLDSIAGEVKQTGERVSRLEREVVDLR
FT                 SQREQLSVLVDRLSQEVADMRVVKERVGGVEAKLAAHHAANNALDLRIHGI
FT                 PYVEGENLKTLFHTLCFSLHITPPPRVRDIFRARKTQRTNVDPVIIVKLDN
FT                 LREKIGLLKIIAAYRRENKMQLSLKHVGIDSDAPIYVNEQLLRENYIIFKE
FT                 AMRLKKHKFLTAVFTRRGLVHVRCNGSENVRCIERIEELNVMCDNEPPLSS
FT                 SRSSQLPTLALEDGPAQSESFRS"
FT   CDS           1360..4188
FT                 /product="Kiri-6_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSFVTLSLRLINGMSQIMWDNVGGSMTGSILRVLXNY
FT                 KQGLKVVHINAQSLLRKIDEFRYLFVKSNVDVICVSETWFMSEQSDLLVNC
FT                 DGYNVFRSDRIGNAGGVAIYVSSSLNCEVKCKQPNDSPIEYIFLEVNSMSK
FT                 ETKSLIGCIYRPNRTIEYAPLIDTIREISTAYTDIILAGDFNSNVLNENHL
FT                 IDSFEALGLYAVNKSMPTHFTDSTDTLLDLFFVNDPSLILLYDQVAAPVFS
FT                 KHDLIFLTYDVSLTHNVNSFSFRDYKGINALVIQSEYSMCNWSPIYQCTSV
FT                 ESQLNVLNINILNMYNKCVPVKIKVIKPRQNLWFNNEIKELIHQRDIAYRK
FT                 WKRYKTDHFCTLYKKLRCRVTKLIKVAKGEIFKPKFENATSSKKTWNELKK
FT                 LGIGKCRQTNNNYIDVENLCQSFSQIDVPEATHNQYLNNISSCDNSFSFMC
FT                 VDQCDVLNGILKVKSNAEGLDNVSPKFLKLITPLLLPHITYIFNTAITTST
FT                 MPTTWKKAKIIPVQKPNKEYRPISILPFLAKVLENLMAQQMLRYLEDNSLL
FT                 AQKQSGFRKKRSCISAITDIVEDIRKQLDNNCVTFLTLLDHSKAFDSVNHS
FT                 ILCSKLKNLFNFSDTAARFIESYLSGRSQAVVSGTRMSSCRLLTRGVPQGS
FT                 VLGPLLFSLYVNDLPSVLSDCEVHMYADDVQIYVSSPVNQLNICISKSNNM
FT                 LKKLNDWATCNGLSINPKKSKCLVISKRPLDTGNLQNLVINNSPINYTTNA
FT                 NNLGMTFNNTLSWSKHITKASGRTYGLLRQLACTKTLLPQQIKTLVAKTIL
FT                 IPTLFYGIEVFGHCDSRDFHNLSVALNSITRYVFNLRRLDHVSNLTTKLLD
FT                 LDLTAWISYRTLTYFHRIITSKEPKYLYDKLVFANSLRTNNLICPRYKTLC
FT                 SNRQFFINAIRQWNNLPHSFKTIRSATQFNKLIKEYLKQ"
XX
SQ   Sequence 4555 BP; 1556 A; 844 C; 819 G; 1332 T; 4 other;
     aagaagaaga agaatcgatc ggttgtgctt tgtatcgctc cgctgttgtt tttacctatt        60
     aaaacaaaac aattaatata aattacttgg tttcatttac caacacctta agtacctgcg       120
     tattccktat aatwtggaaa actgcaatta aatcaatctg taaaagtgaa tcaagttatt       180
     aattacaaat tgtgaaaagt tcgctttgac acacatattc tcgtacatat acacttatta       240
     actcaccaca aaacaaatac accgaaaccg atacactaac acaccaaaat cgctacactc       300
     aacaacacaa caaaagaaac tgccgaagat gtctacgtcc actgcatcca aacgcctacg       360
     cagcaacgct ggaaccgcaa atgaccgcct ttccgatgcc ccctcgtccc agattctgga       420
     tctgcttaag gtgcgcttcc aggagcagac ggatgagatt acggccttcg taagggaaac       480
     ggagaaacgc atacttagta ttctctcgga cagactggat tccattgcgg gtgaggtgaa       540
     gcaaactgga gagcgggtat ctcgcctgga gcgggaagta gttgatctgc gctcgcagcg       600
     ggaacagctg agtgttcttg ttgaccgtct cagccaggag gtagcagaca tgcgggtggt       660
     caaagagaga gtgggaggtg tggaggctaa actggctgct caccacgcgg ctaacaatgc       720
     gcttgacctt cgcatacatg gaatcccata tgttgagggt gaaaacctaa aaacactttt       780
     tcacactctg tgtttttcac tgcacataac tccgccaccg cgggttcggg acattttccg       840
     ggcccgtaaa acacaaagaa caaatgtcga cccggtcatt attgttaagt tggataactt       900
     gcgagaaaag attgggctac tgaaaataat tgcagcgtac cggcgagaaa ataaaatgca       960
     actgagctta aagcacgtgg gtatcgactc tgatgctccg atctatgtaa atgagcagct      1020
     tttaagagaa aattacatca tcttcaaaga agcaatgcga ttgaaaaaac acaagttttt      1080
     gactgcagtt tttacccgac gtggccttgt tcatgttcgc tgtaatggga gcgagaatgt      1140
     gcgatgcata gagcgcattg aagagctaaa cgtgatgtgc gataacgaac ctcctctctc      1200
     ctcctcccgc tcttcacaac tccccacact agccttggaa gatggacctg cacaatcgga      1260
     gagctttcgc tcttaatttt attcgtactc ttaatgttca tttaattgtt aggttattca      1320
     ttaaattgta tcagtatata agtaattgtt taatgtttaa tgtcttttgt tacactgagt      1380
     ttgcgcctca taaatggtat gtcccaaatt atgtgggata atgtaggggg ttccatgact      1440
     ggtagcattt taagagtctt aastaattat aaacagggct taaaagtggt tcatattaat      1500
     gcacagagtc tcttaagaaa aattgatgag tttaggtatc tgttcgtgaa gtctaacgta      1560
     gatgtaatat gtgtatctga aacgtggttt atgtctgagc agtctgattt attggttaat      1620
     tgtgatggtt ataatgtctt tcgttctgac cgaattggga acgctggtgg agtggccata      1680
     tatgtcagca gcagtctwaa ctgtgaggtc aagtgtaaac agccaaacga tagtcccatc      1740
     gaatatatat ttttggaggt aaatagtatg tcaaaggaaa caaaatccct catcggctgc      1800
     atttaccgac ctaaccgaac gattgaatac gcacctttga tagacactat ccgtgagata      1860
     tctactgcct acactgacat tatacttgca ggcgacttta acagtaacgt ccttaatgag      1920
     aaccacctaa tagatagctt cgaggctttg ggcctttatg ctgtcaataa atcaatgcct      1980
     actcacttca ctgactccac tgataccctt cttgacttgt tcttcgtaaa tgaccctagt      2040
     ttaattctat tatatgacca ggtcgcagca ccagttttct cgaaacatga ccttatattc      2100
     ttgacttatg acgtatcttt gacccataat gttaactcgt tcagctttag ggattataaa      2160
     ggcattaatg ctttggttat ccagagcgaa tatagtatgt gtaactggtc tcctatttat      2220
     caatgtacaa gtgttgagtc tcaattaaat gtcttaaata ttaacatatt aaatatgtat      2280
     aacaaatgtg tacctgtcaa aataaaagtt attaaaccaa ggcaaaacct gtggtttaat      2340
     aatgaaataa aggaacttat acatcaacga gatatcgcgt acaggaaatg gaagcggtat      2400
     aagactgacc atttttgcac tttgtataaa aaattaaggt gcagagttac aaaacttata      2460
     aaggttgcca agggtgaaat attcaaaccg aaatttgaga atgccacctc gtcaaaaaag      2520
     acctggaatg aactcaaaaa attgggaatc ggaaagtgca ggcaaacaaa caataactat      2580
     attgatgtag agaatctctg tcaatcgttt tcgcaaatcg atgtacctga agcaactcat      2640
     aaccagtacc tgaacaatat atctagctgt gataatagtt ttagctttat gtgcgtcgat      2700
     caatgtgatg ttttaaatgg aatcctcaaa gttaaatcga atgctgaagg tttagataac      2760
     gtcagtccca aattcttaaa acttattact ccgctacttc ttccacatat aacatacatc      2820
     ttcaatactg caattactac ttcgactatg cccacaactt ggaaaaaggc aaagattatt      2880
     ccagttcaaa aaccaaataa ggaatacaga cccatttcaa tccttccctt tcttgctaag      2940
     gtgcttgaaa atttaatggc gcagcagatg ttgaggtatc tcgaagataa ctccctgctg      3000
     gcgcaaaaac aatctgggtt caggaagaaa agaagctgta ttagtgcaat aacggacatt      3060
     gttgaagata ttcggaagca actggacaat aattgtgtga cgtttttaac tctattggac      3120
     catagcaaag catttgactc ggtgaaccac tctattctct gctctaagtt aaaaaatctc      3180
     tttaatttct ctgatactgc agctcgattt attgagtcat acctaagtgg aaggtcacag      3240
     gcagttgtct ctggcactcg catgtctagc tgtagattgc taacacgggg agtacctcag      3300
     ggatcagtac ttggtccttt gttattctct ttgtatgtta atgatttacc tagtgttctg      3360
     tctgactgtg aagtccatat gtatgcggat gatgttcaaa tttatgttag tagtcctgtt      3420
     aatcagttaa atatttgtat tagtaagagc aataatatgc tcaagaaatt aaatgactgg      3480
     gcaacatgca atggattaag cattaatccg aagaaatcca aatgtttagt aatttccaag      3540
     agaccacttg atactggaaa ccttcaaaat ctggttataa ataacagccc tataaattac      3600
     accacaaatg ctaataactt agggatgact tttaataata cactctcttg gagcaaacat      3660
     atcactaaag cctctggtcg aacatatgga ttgttgagac aacttgcatg tactaagaca      3720
     ctccttccgc aacagataaa gaccttagtt gcaaaaacaa tccttattcc aacactattc      3780
     tatggaatag aggtgtttgg acactgtgac tcacgagatt tccataattt atcagtagcc      3840
     cttaattcaa taactagata tgtgtttaat cttagacgtc ttgaccatgt atccaacttg      3900
     acaactaaac ttcttgacct tgacttgact gcatggatta gctatagaac tcttacttac      3960
     tttcatagaa ttataacttc gaaagaacca aagtatttgt atgataaact tgtgtttgca      4020
     aattcactta gaacgaataa cttgatatgc cccagataca aaactttatg ctcaaaccgt      4080
     caatttttta taaacgctat ccgtcaatgg aacaacctac cacactcttt taaaaccata      4140
     aggagcgcaa ctcagtttaa caaactaatt aaagaatatt taaaacaata agcaaaagac      4200
     tatatttata atatttatag ttttaatata gataaaaaag aaaataataa taaaaataaa      4260
     aataaaaaat aaataaataa tataaaataa aaaaataaat aaaaataaat aaaataaaaa      4320
     taaaaataaa aaaatataaa ataaaaataa catagttaaa taaataaata ataaaaataa      4380
     ttaaataaaa tatatatata gctagtaaaa ttagtaaatt aataataaat aaataacgaa      4440
     taattttaga taataagaat acgaattgtt agactaaata ataatttttt cttgactagt      4500
     gcaataacta taagctaatc acttgtcgca ctaggaaaaa cgaaaataaa tgaaa           4555
//
ID   Kiri-6_DTa  repbase;    DNA;    INV; 5808 BP.
XX
AC   .
XX
DT   08-JAN-2013 (Rel. 19.10, Created)
DT   08-JAN-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5808
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2828-2828 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~% identical to consensus. Insertion inside of RT (not excluded).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(65..619,618..974)
FT                 /product="Kiri-6_DTa_1p"
FT                 /translation="MSASKRLRSEKSNTDIKVARXSDTQLLQQIEEKFSSQ
FT                 RKEINMELLQLIDDKFAEQRESLGSEYRESEARFLNTLQAKFDAMNTEIQN
FT                 LTKRVRELETEAKEVNTLKQQVCELDAQLAAKSNAQEVADVACNLRWHGVP
FT                 QVEGENLTTLFNRLCFSLHLTPPPRVRSIFRVRPRQRNSLVDPIIKNKNHV
FT                 REKAALLRAIGVHRRTTKSQLSLQLIGFDSPAFIYLNEQLTKTNYEIFKHA
FT                 MRLKKQKRVAAVFTRRGDVFIKPIDGGEAYYVQSSNELSDLSRDAGEINSS
FT                 RDAALENNSFRN"
FT   CDS           join(1123..2442,2367..3623,4628..5551)
FT                 /product="Kiri-6_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="YLKLLAMEENLNNLSANSHALLRILAKQKPGLKICHI
FT                 NAQSLPKKIEEFRYMFVNSEIDVICVSETWFVQSLCDVLISCDGYNVYRSD
FT                 RVSHGGGVAIYVNKKLKAKIICQHTINSAIEYIFLELHNPIMQKNLLIGCI
FT                 YRPHCNTNYDDLINLLSDITVNFTDVILAGDLNSDILRESHLTSNMESLGL
FT                 KPVNLSFPTHFSRTRNTLLDLFFVSDVNNICLYDQLIVPSFSKHDLIYLTY
FT                 NFDLNYTDHTIVYRDFKNINYILLSEAFDQCIWDNIYSLPTVDLQLNLLQH
FT                 NISHLYDSFVPVKSKTIRPSEKPWFSNNIKLAIRKRNEAYQKWKRYKTPQH
FT                 HSTFVTARKTVTKLIDSAKSNFFRQRFKNATSSSQTWKQIKALGIGKQNTS
FT                 QDLDVDIDELNLKLADCTVPEVTTNTYLKTSVILGLDLCVLTNVMSGHNQH
FT                 VPENICDTRFRFMCVDQCDVLDNILKVKSNAVGPDDIHPKFIKILLPKLIP
FT                 YLTHTFNTALTTSTFPDCWKTAKIIPIPKASKEYRPISILPYLSKVFENIV
FT                 ASQINNFISVNSLLNDHQSGFRKNRSCTSAILKITEDIRQQTDNSYVTFLL
FT                 LLDYSKAFDTVNHEILCSKLKNFYFFSNTAVKLMCSYLKNRRQYVVSSNIC
FT                 SSFAYLKRGVPQGSVLGPLLFTLYINDLPSVLSTCSVHLYADDVQMYVSRP
FT                 LNRISECLDICRMELGKVNEWANNNGLXINPSKSKCLIIFKKKLCNNTLSP
FT                 LMINNTPIEYVETANNLGITFNRTLNWDDHVNKAIGKTYGLIRSLSLVKCS
FT                 LPVTVRLLIAKSCLIPTLFYGLEIYANCDFASQHKLKVAYNSIARKERKIL
FT                 ESTEGNYRVMDIMCTVLIVLVMGEELQYMQYMSTCSVHLYADDVQMYVSRP
FT                 LNRISECLDICRMELGKVNEWANNNGLAINPSKSKCLIIFKKKLCNNTLSP
FT                 LMINNTPIEYVETANNLGITFNRTLNWDDHVNKAIGKTYGLIRSLSLVKCS
FT                 LPVTVRLLIAKSCLIPTLFYGLEIYANCDFASQHKLKVAYNSIARFIFNLH
FT                 RSNHVTQFAYKIFNLSLADYIKSRTIIFLHKVIYTREPSYLFEKLQFSRST
FT                 RTKNIICIRHRFLLSNRQFFVNAIRTWNELPNYIKETRSAPLFKTKLLSHL
FT                 KNSSSSLL"
XX
SQ   Sequence 5808 BP; 1919 A; 1127 C; 1080 G; 1679 T; 3 other;
     atcaataact aatacaatta cacaaatcac tcaaactcaa acattttatt aaaacaacaa        60
     cattatgagt gcatctaagc gactaaggag tgaaaaatcg aataccgaca tcaaggtagc       120
     tcgcmcgtcg gacacacaat tgctgcaaca aattgaagaa aaattctcga gtcaacggaa       180
     ggaaattaac atggaactgt tgcagctgat cgatgataaa ttcgcggagc aaagggagtc       240
     actaggctca gagtatcgag agagcgaggc ccgctttctt aacactctac aggccaaatt       300
     cgatgcaatg aacaccgaaa tacagaatct tacgaaacga gtgcgagagc tggaaaccga       360
     ggcaaaagag gtgaatacac tgaaacaaca agtgtgtgaa ctggatgctc aactggcagc       420
     gaaaagcaat gcacaggagg tcgcggatgt tgcatgcaac cttcgctggc atggtgtgcc       480
     gcaagtcgag ggggaaaatc tcaccactct tttcaatcgc ctttgttttt cactacacct       540
     gacccctcct ccgcgagtta ggtctatttt tcgagtccgc ccgcgccaaa gaaactcact       600
     tgttgatcca ataataaaat aaaaatcacg tgcgcgaaaa agctgcgctg ctgcgggcga       660
     ttggagtgca ccgacgaaca accaaatcgc agctgagctt acagttgatc ggttttgact       720
     cgccggcatt tatatattta aacgagcaat taacaaaaac aaattatgaa atctttaaac       780
     atgccatgcg actcaaaaaa caaaagcggg ttgcggccgt ctttactcgc cgtggagacg       840
     tatttatcaa gcctatagac ggaggagagg cttactatgt gcaaagctct aatgagcttt       900
     ctgatctgag tagagatgcg ggcgaaatta actcaagcag agatgccgct ttagagaata       960
     attcatttcg taattaaaat attttttatt tctacattag gatttgaaat tagtttaata      1020
     tctttaattc ttgtaagtct tttgtctagg atagtcgcat tgttaattta gtagttagcc      1080
     aaatttcttg tctggtgtgt agtccttgtt attctatttt gatatttaaa actattagca      1140
     atggaagaaa acttgaataa tctatcagca aatagtcatg cccttctgcg catcctggca      1200
     aagcagaaac ctggtctcaa gatttgtcat ataaatgccc aaagcctgcc aaagaaaatt      1260
     gaagagttta ggtatatgtt tgtaaattcg gaaattgatg ttatatgtgt gtctgaaaca      1320
     tggtttgtcc agagtctgtg tgatgtgcta atatcgtgtg atggatataa tgtgtaccgt      1380
     tctgatcgtg ttagtcatgg gggaggagtt gcaatatatg taaacaaaaa attaaaagcc      1440
     aaaattattt gtcaacacac aataaacagt gcaatagaat atatttttct tgaattacat      1500
     aacccgataa tgcagaaaaa tctattaatt ggctgcattt atcgtccgca ttgtaacaca      1560
     aattatgatg atcttatcaa tcttctgtca gatattacag taaactttac tgatgtaatc      1620
     cttgcgggcg atcttaatag tgatattctg agggaatctc atcttaccag caacatggaa      1680
     tcgctaggtc tgaaaccagt gaatctctca tttccaaccc acttcagcag aacacgtaac      1740
     acattattag atttgttttt tgtgagtgat gttaataata tatgtttgta tgatcagcta      1800
     atcgttccgt ccttttcaaa acatgacctt atatacctga cctataattt tgaccttaac      1860
     tacactgacc atacaatagt ttaccgtgat tttaagaata ttaactatat actgctgagc      1920
     gaagcatttg accagtgtat atgggacaat atttacagtc ttccaacagt tgatcttcaa      1980
     ctcaaccttc ttcaacataa tattagccac ttatacgata gttttgttcc agtcaaaagt      2040
     aaaacaattc gaccgtccga aaaaccatgg tttagtaata atataaaatt ggcaattaga      2100
     aaacgaaatg aagcatacca gaagtggaaa agatacaaga caccgcaaca ccacagcacg      2160
     tttgtaacgg cacgaaaaac ggttaccaaa ctaatcgatt ctgcaaaatc aaactttttt      2220
     aggcaaagat ttaaaaatgc aacctcttcg agtcaaacat ggaaacaaat taaagctcta      2280
     gggataggta aacaaaacac atcacaggat ctagatgttg acatagatga actcaaccta      2340
     aaattagcag actgcacagt tcctgaggtc acaaccaaca cgtacctgaa aacatctgtg      2400
     atactaggtt tagatttatg tgtgttgacc aatgtgatgt cttagataat attcttaaag      2460
     ttaagtctaa cgcagttggg cctgacgata ttcatcctaa atttataaaa attctacttc      2520
     ctaaacttat cccstacctt acgcacacat ttaacacggc ccttaccacg tctacgttcc      2580
     cggattgctg gaaaaccgcc aaaattatcc caatacccaa agcaagcaaa gaataccgcc      2640
     ctatatctat tcttccatac ctctcgaagg tgtttgaaaa tattgtcgca tcacaaataa      2700
     ataattttat atctgtcaac agcctcctta atgatcatca atctggattt agaaaaaatc      2760
     gtagctgcac atcagccatc ttaaaaataa cagaagatat tcgtcaacag acggacaact      2820
     cttatgtcac cttcttactg ttgctggact atagcaaagc gttcgacaca gtgaatcatg      2880
     aaatcctgtg ctcaaaactc aaaaactttt atttcttttc taatactgcc gtcaaactta      2940
     tgtgttcgta tcttaaaaac cgtcgccaat atgttgtatc gtcaaatatt tgttcttcgt      3000
     ttgcgtatct gaagcgtggt gtaccccagg gttcggttct cggaccacta ttattcaccc      3060
     tctatataaa tgatcttccg tctgtgttgt cgacatgtag tgtccattta tatgctgatg      3120
     atgtccagat gtatgttagt cgtcccttaa atagaattag tgagtgttta gatatttgta      3180
     gaatggagct tggtaaagta aatgaatggg caaataacaa cggtctckcc atcaatccat      3240
     caaaatcaaa gtgcttgatc atttttaaaa agaagttatg caataataca ctaagccccc      3300
     tgatgataaa taacacacca attgagtacg tggaaaccgc caataatctg ggtatcacat      3360
     tcaatagaac attgaactgg gatgaccacg taaataaagc gataggcaaa acatatgggc      3420
     taataagatc cttgtcacta gttaaatgtt ccttacctgt tactgtgcgt ctacttattg      3480
     cgaagtcttg tctaataccc acactcttct atggtctaga gatctatgca aattgtgatt      3540
     ttgcaagcca acataaactg aaagtagcat acaatagtat tgcgcgaaaa gaaagaaaaa      3600
     ttctcgagtc aacggaagga aattaacatg gaactgttgc agctgatcga tgataaattc      3660
     gcggagcaaa gggagtcact aggctcagag tatcgagaga gcgaggcccg ctttcttaac      3720
     actctacagg ccaaattcga tgcaatgaac atcgaaatac agaatcttac gaaacgagtg      3780
     cgagagcttg aaaccgaggc taaagaggtg aatacactga aacaacaagt gtgtgaactg      3840
     gatgctcaac tggcagcgaa aagccatgca caggaggttg cggatgttgc atgcaacctt      3900
     cgctggcatg ctgtgccgca agtcgagggg gaaaatctca ccactctttt caatcgcttt      3960
     gtttttcact acacctgacc cctcctccgc gagttaggtc tatttttcga atccgcccgc      4020
     gccaaagaaa ctcacttgtt gatccaataa taataataaa aatggatcac gtgcgcgaaa      4080
     aagactgcgc tgctgcgggc gattggagtg caccgacgaa caaccaaatc gcagctgagc      4140
     ttacagttga tcggttttga ctcgccggca tttatatatt taaacgagca attaacaaaa      4200
     acaaattatg aaatccttaa acatgccatg cgactcaaaa aacaaaagcg ggttgcggcc      4260
     gtctttactc gccgtggaga cgtatttgtc aagcctatag acggaggaga ggtttacaat      4320
     gtgcaaagct ctaatgagct ttctgatctg agtagagatg cgggcgaaat taagagatag      4380
     tccttgttat tctattttga tatttaaaac tattagcaat ggaagaaaac ttgaataatc      4440
     tatcagcaaa tagtcatgcc cttctgcgca tcctggcaaa gcagaaacct ggtctcaaga      4500
     tttgtcatat aaatgcccaa agcctgccaa agaaaattga agagttttgg tatatgtttg      4560
     taaattcgga aattgatgtt atatgtgtct gaaacatggt ttgtccagag tctgtgtgat      4620
     gtgctaatat cgtgtgatgg atataatgtg taccgttctg atcgtcttag tcatggggga      4680
     ggagttgcaa tatatgcaat atatgtcgac atgtagtgtc catttatatg ctgatgatgt      4740
     ccagatgtat gttagtcgtc ccttaaatag aattagtgag tgtttagata tttgtagaat      4800
     ggagcttggt aaagtaaatg aatgggcaaa taacaacggt ctcgccatca atccatcaaa      4860
     atcaaagtgc ttgatcattt ttaaaaagaa gttatgcaat aatacactaa gccccctgat      4920
     gataaataac acaccaattg agtacgtgga aaccgccaat aatctgggta tcacattcaa      4980
     tagaacattg aactgggatg accacgtaaa taaagcgata ggcaaaacat atgggctaat      5040
     aagatccttg tcactagtta aatgttcctt acctgttact gtgcgtctac ttattgcgaa      5100
     gtcttgtcta atacccacac tcttctatgg tctagagatc tatgcaaatt gtgattttgc      5160
     aagccaacat aaactgaaag tagcatacaa tagtattgcg cgttttatat ttaatttgca      5220
     tagatccaac catgtaactc aatttgctta caaaatattt aaccttagct tggcagatta      5280
     tattaaaagc cgaactataa tctttttaca caaagttata tacaccagag agccatcata      5340
     cctatttgaa aaactacaat tctccagatc tacaagaaca aagaatatta tatgcatccg      5400
     acacaggttt ctgctctcaa atagacaatt ttttgttaat gcgattagaa cgtggaatga      5460
     acttcccaat tacataaaag aaactaggag cgcacctcta tttaagacaa aacttctttc      5520
     acacctaaaa aatagcagct ctagtttgct ataagctgta ttatcctatc ttaacattgc      5580
     gacttatccc caaaacttct tcctttgttt tttttttttt cgacttaact atatttgtca      5640
     ttctgtactt tcaataatta atttaaaatg tatgtcatta gatttaagaa ccaatattgt      5700
     tcgaatataa aattgattat ccgttgtgac tagcgcagta atttataagt tatgcaactt      5760
     gtagcgttag gaagccaaaa caataaataa taataataat aataataa                   5808
//
ID   Kiri-7_AAe  repbase;    DNA;    INV; 4703 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4703
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 702-702 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           274..1089
FT                 /product="Kiri-7_AAe_1p"
FT                 /translation="MSQNGIVTRSGSTSSLVGSIAKRSREDLTKQDGDSEI
FT                 VSLDDLWNKMQTMLSNSCGRIETKIEKCNAALEKRMTNIEEKLNAVREECS
FT                 EKIVKLEEDVVGVRADVDFAVEAVHRMGRDRELVFSGIPFHSQENLDEVFR
FT                 KIALTIGYHENNLPIVDLQRMARAPIALGTSPLILCEFALRNKRNEFYRSY
FT                 LSKRSLCLRDIGLDSGNRIYMNENLTNNARQIRAEAIKLKKLGYVENVSTR
FT                 NGIVHVKRKGTDKPSAIYSLQQIVQRKTPIQ"
FT   CDS           1728..4556
FT                 /product="Kiri-7_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDRIDASSNSASDQGVIAKAVVNAVLLKDKLNISHIN
FT                 VQSLCARRFSKFEEXKRLVTESKIDIACFTETWMDSSVTDSMIHIQGFNVV
FT                 RNDRNRHGGGICIYIRKGLAYRLVKKSFICVNDALSKTEFLILEFQIDNDR
FT                 IVLAVYYNPPDTDCSELLRNHFEEFSVRYSSTFFIGDFNTDPFKQNRKSSC
FT                 FNDVVNSMSFSRINSEPTFFYNSGCSLLDLFLTDTPDVVLRFSQISMPGIS
FT                 KHDLLFASLNYSNKIENQGYWYRDYFNYNHDSLYDDFFRFNWNRYFCVDDP
FT                 DILTSILNNQLTVLHDTFFPLRFHKFRKNPWFNNDIETAMINRDLAYRNWK
FT                 RCKTFENKMQYKRLRNLVSSMISNAKLVHDRQKLNLNLPSKQLWNNVKSLG
FT                 VSTKESFPVVSQHSANDINEYFSSNFTADDNETIRFSSNGNGFCFRQIVDY
FT                 EIVNAIFSVKSNAVGFDGIPVNFLKIVCSFALPVFEHLFNSIIVSNKFPSQ
FT                 WKSAKVIPINKKPNVLSISNLRPISLLSTVSKVFEKLIKIQILEYVNRMNY
FT                 INIFQSGFRNNHSTETALIKVHDDIAKSIDKNGVTILLLIDFAKAFDRVAH
FT                 NKLINKLITLFNFSNCAARLIASYLSHRDQAVICDGKLSDFKPTISGVPQG
FT                 SVLGPLLFSLFINDLPTVLDFCSVHMFADDVQIYICTDENTDLSSAGSLMN
FT                 HDLHKVMKWSKDNLLPINPDKTKAMLISKQKTPPQPPQILFGGLEVQFVDR
FT                 VNNLGVIFNKNLEWDSHVNMQCSKIYGSLKRLNLTTRHCDTGTKLKLFKSL
FT                 ILPHFIFGDFIYTNALAGSTDKLRIALNACVRYVYKLSRFSHVSHLQKXLI
FT                 GCPFVNFYKYRSCLNLFRIIKTSSPPYLFENLVPFRGTRTKNYRVPQHSSS
FT                 YYSQSFFVRSIVSWNSLPTSIKTINSFPSFKKNLLQNFQ"
XX
SQ   Sequence 4703 BP; 1417 A; 855 C; 875 G; 1551 T; 5 other;
     tctgagtttc tgaagggatg agcgacagta cttaagctca aaagtggttg cagttaaatc        60
     cttctttttg catccgtaaa gtaattccgt tgcataataa actggtgttt ctgtatatat       120
     agaaacgttc tggagtagtg acacataaag ttcaacataa acgtgcgtta attgtcgctt       180
     aaacgtgaaa aaatcaatca ctgtgcaaca aagcaaaagt tgtggccctt cagcattatt       240
     tacgcatctg tcatccgttg gcactctccc aaaatgtctc aaaatggaat tgttactcgg       300
     tccggatcaa catcttctct tgttggatca attgccaaac gatctcggga agatttaacc       360
     aagcaagatg gcgacagtga gattgttagc ctcgacgacc tgtggaataa aatgcaaaca       420
     atgctctcaa actcctgcgg acgaatcgag acgaagattg agaaatgtaa tgcagcgttg       480
     gagaaacgaa tgactaatat cgaggagaag ctgaatgctg tgcgtgagga gtgttccgaa       540
     aaaatcgtga agcttgagga ggacgtggtt ggagttcgtg ccgatgtgga tttcgctgtt       600
     gaggctgtgc atagaatggg cagagataga gagctcgtgt tttccggtat tcctttccac       660
     agccaggaga atctggacga agtttttcgt aaaattgctc taacgatcgg ctaccatgaa       720
     aataatctac ctattgtcga tttgcaacgt atggctcgtg ctccgattgc attaggaacg       780
     tcccctctca ttctctgtga gttcgctctg cgtaataaga gaaatgagtt ctaccgatca       840
     tatctctcga aacgctcgct atgccttcgt gatattgggc tcgatagtgg gaatcgtatc       900
     tatatgaacg aaaatctcac caacaacgct agacaaattc gagctgaggc aatcaagctg       960
     aaaaagttgg gatacgtaga gaatgttagc actcggaatg gtatcgtcca cgtcaaacgt      1020
     aaaggaacgg ataagccgtc tgcgatctat tcacttcaac agatcgttca acgcaaaacc      1080
     cctatccaat aaagctattc atttccttcc atgatatcca tgtttccaat cctttacatt      1140
     ctttgaatcc atccactcct gaaagttaaa aactatattc atactacgac aaccctagcc      1200
     tagtaatctc acaatcctag ttctttgcat atccatgact cctctcccaa tttccatgat      1260
     tctttccctc ctaaaagttt gttgctgcta ccgaccactg gtgttatgtt gctgttgggg      1320
     taccgatgta cgttgctgct tctgtatggc tggtgctgtt gaacgttgct gctgctgtat      1380
     ggctggtgct gwttgctgtg caatactgat gttgttgaat ggctggtgct gctgaatggt      1440
     ttgatgcaag catcgatgaa gaattgttat attggtttta tgaactcgaa ctcagatcat      1500
     ttgcaatgtg ataaattgat tattatgtat caacgtggct tataattatc ttttctttgt      1560
     gctttttaaa cggatttgct gcaacgaagt tgcgaaaatt agtagtcgtt tgagtatgcg      1620
     gtctatagtt agttttaaga tgttgttctc tttagctgta aattacttgt ttgctgtctg      1680
     ctttgtggat tggtttttct tgaagcgttc aatcacgttt gttgattatg gatagaatcg      1740
     atgcttccag caacagtgct tctgatcagg gtgtaattgc taaagctgtt gtaaacgcgg      1800
     ttttgctgaa agataagcta aatatttcgc acatcaacgt gcaaagctta tgtgcacgca      1860
     gatttagtaa atttgaagag wtgaaaagat tggtgacaga gagtaagata gacatcgcct      1920
     gtttcacaga aacttggatg gatagttcag taactgactc gatgatacat attcaaggct      1980
     ttaatgtagt cagaaatgac cgcaataggc atggaggagg aatatgtatc tacataagaa      2040
     aaggtctagc ttatcgatta gtcaagaaat cttttatttg tgttaatgat gctctatcga      2100
     aaactgaatt cctaatttta gagtttcaaa ttgacaacga tcgcattgtt ttagctgttt      2160
     attacaatcc tcctgatact gattgctctg aattgctaag aaatcatttt gaagagtttt      2220
     ctgttcgata ttcgtctact ttctttatcg gtgatttcaa tactgatccc tttaaacaaa      2280
     atagaaaatc ttcgtgtttc aatgatgtcg taaacagtat gtctttttca aggatcaatt      2340
     cagaacctac gtttttctac aattcgggct gctcgctttt agatttattt ttgacagata      2400
     ctcctgatgt cgtgttaaga tttagtcaaa tatcaatgcc cggaatatct aaacatgatc      2460
     tcttatttgc ttctctaaac tattctaata aaatagaaaa ccaaggttac tggtaccgag      2520
     actatttcaa ttataatcat gattctcttt acgatgattt ttttagattc aactggaata      2580
     gatatttttg cgttgatgat ccggatatac tgacaagcat tctgaataat cagttaacag      2640
     ttcttcatga tacttttttt cctttacgtt ttcataagtt tcgcaagaat ccttggttca      2700
     ataatgatat cgagacagct atgattaaca gagatcttgc ttatcgcaac tggaaacgct      2760
     gtaagacttt tgaaaataaa atgcaatata aaagattgag aaacttagtc agttctatga      2820
     tatcaaatgc aaaactagtg catgatcgcc aaaagttaaa tttgaatctt ccttcaaagc      2880
     agctgtggaa caatgtgaaa agccttggtg tttcaactaa agaatccttt ccggtagtga      2940
     gccaacattc tgcgaacgac attaatgaat atttctcttc aaattttaca gcagatgata      3000
     atgaaactat tcgtttttca tcaaatggca atggcttctg ttttagacag atagtcgact      3060
     atgaaatcgt taatgcgatt ttcagtgtca agtccaatgc tgttgggttt gatggcattc      3120
     ctgtcaattt tttaaagatt gtttgttctt ttgcgttacc agtttttgaa cacctattca      3180
     actcaatcat agtttcgaat aaatttccat ctcagtggaa atccgcaaag gttattccaa      3240
     tcaataagaa acctaacgtt ctctcaattt ctaacctaag accgataagc ctattgtcta      3300
     cagtctcaaa agttttcgaa aagcttatca aaattcaaat tttagagtat gtaaaccgta      3360
     tgaactatat caacattttc caatctgggt tcagaaacaa tcatagcact gaaactgcat      3420
     taattaaggt gcatgatgac attgcaaaat caattgacaa aaatggtgtc actattcttt      3480
     tgttgattga ttttgcaaag gccttcgacc gtgttgcgca caataaacta ataaataaac      3540
     taatcacttt gttcaatttt tcaaattgtg ctgcaagatt aatcgcaagt tacctaagcc      3600
     atagggatca agcagtgatt tgcgatggta aattgtctga ttttaaacca acgatttccg      3660
     gtgttcctca gggttcggtc cttggtccgc tccttttttc actttttatc aatgatctac      3720
     caactgtgtt agatttctgt tcagttcata tgtttgcaga tgacgtacaa atttatattt      3780
     gtactgatga gaacaccgat ctgtcttctg caggatcttt gatgaatcat gatcttcaca      3840
     aggttatgaa atggtccaaa gataacctac ttccaatcaa cccagataaa actaaagcga      3900
     tgttgatatc taaacaaaaa actcctcctc agccaccaca aattctattt ggtggcttgg      3960
     aagtccaatt tgttgatcgt gttaataatt taggtgttat attcaacaaa aatttggaat      4020
     gggactctca cgttaatatg cagtgctcta aaatttacgg atcattgaaa agattaaacc      4080
     taacaactag acactgtgat acaggcacca aattaaaatt atttaaatct ctgattttac      4140
     ctcattttat tttcggcgac ttcatataca ctaatgcatt ggctggatca acagataagt      4200
     taagaattgc tcttaatgct tgtgttcgct atgtttacaa actttctaga ttttcacacg      4260
     tgtcacattt gcaaaaamat ctcattggat gcccatttgt aaatttttat aagtacaggt      4320
     cgtgtttgaa tttattcagg attattaaaa cttcttctcc accatatctt tttgaaaacc      4380
     ttgtkccctt ccgagggacg cgtacaaaaa actatagagt acctcagcat agctcttctt      4440
     actatagcca atcattcttt gttaggagca ttgttagctg gaacagttta ccaacttcaa      4500
     taaaaaccat caattcattt cctagcttca agaagaacct cttgcagaac tttcagtaga      4560
     tgggtgttgt taaagagaac atattgttaa gagattatta agtgcttttc tagtttaack      4620
     ccatattgta acattaaaaa agatgaatgt cttaagttac atgaatttaa taaatgaaat      4680
     aaataaataa ataaataaat aaa                                              4703
//
ID   Kiri-7_CQ   repbase;    DNA;    INV; 1833 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1833
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 126-126 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1668
FT                 /product="Kiri-7_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="KNDPAGDVDADELNAFFSSGHRQLQAVDRSDNSSEPC
FT                 HRTTADHGDNGFAFRHTDVNEISRKILEVQTNATGTDDIPISFVKLLCPFV
FT                 LPMLAHLFNHIIDTSSFPAAWKKAIVTPIPKSSSPIQPKDFRPISVLPAVS
FT                 KVLEKVLLGQISEHLNAAEPPLLAQNQSGYRKGYSTTTALTKVVHDVYSNL
FT                 DENRCTVMVLVDFSLAFNCVNHQILRKKLNTEFKFTRSACDLITSFLSGRS
FT                 QIVRFGNSMSAALDVPDGTPQGSCLSALLFSLYINSLPRNLKCEWQLYADD
FT                 LQVYLSGPIAEVDRIVRDVNEDLAAIADWARVNQLFPNPKKTQAIVFNKTG
FT                 TVTPQENIVFCDSIIPLSSQVINLGLHMDCNLTWKAQVNDVVRKVYHTLRT
FT                 FRRFGSVLSLQTRRKLVQXVIVPFFTYCDTVYFPGLSAALREQLHRGFKSA
FT                 LRFVHNLRRRDTTVALRNSIMGHDLPDNYQLRVCCFMKKAFEGTLPDYIMQ
FT                 HLQRGRQERTAGFIIPRHTTSSGKSVLVHGASCWNSLPMAIKREARFNPFK
FT                 RAVITHMQN"
XX
SQ   Sequence 1833 BP; 474 A; 527 C; 408 G; 423 T; 1 other;
     aagaacgacc ctgctggtga tgtcgacgcc gacgaattga acgccttctt ctctagtggc        60
     caccgccagc tgcaagctgt tgatcgtagc gacaactcct ctgaaccgtg tcatcgaact       120
     accgctgacc acggagacaa tggttttgct tttaggcaca ccgatgtaaa cgagatctca       180
     cggaagatcc tcgaggtcca gaccaacgct acgggcacag acgacattcc gatctccttc       240
     gttaagttgc tgtgcccatt tgtactacca atgcttgccc acctgttcaa ccatatcatc       300
     gacacaagtt catttccggc ggcctggaag aaggcgatcg tcacaccgat accgaaaagc       360
     tccagcccaa ttcagccgaa ggacttccga cccatcagtg tcctgccagc agtgtcgaaa       420
     gttcttgaaa aagttcttct tggccagatt tccgagcacc tgaacgctgc agaaccaccg       480
     ctcctagcac aaaaccaatc gggttaccgg aagggttaca gcaccaccac ggccctcaca       540
     aaagttgtgc acgatgtgta cagcaaccta gacgaaaacc gctgcacagt gatggtcctt       600
     gttgactttt cgctggcgtt taattgcgtg aaccatcaga ttctacggaa gaagctcaac       660
     accgagttca agttcaccag gtctgcttgt gacctcatca catctttcct cagtggacgg       720
     tcccagatcg ttcgctttgg gaattcaatg tcagcagcgt tggacgtacc ggacggaacg       780
     ccacaaggat cttgcctcag tgcgttactg ttcagcctgt acataaacag tttgccaagg       840
     aacctgaagt gcgagtggca gctgtacgcc gacgatctgc aggtttatct ctctggcccc       900
     atcgctgagg tagaccgaat cgtgcgcgac gtcaacgagg atctggcggc gatcgccgat       960
     tgggccagag tcaaccagct ttttccgaac cccaaaaaga cccaggccat cgtgttcaac      1020
     aaaaccggaa ctgtaacacc ccaggagaac atcgtcttct gcgactcgat catcccactt      1080
     agcagccaag tgataaacct tgggctgcac atggactgca atctgacctg gaaggcacaa      1140
     gttaacgacg tcgtcaggaa agtttatcac acgttgagaa ccttccgaag gttcggatct      1200
     gtgctctccc tgcagacacg acgtaaactt gtacaakctg ttattgtccc attcttcacc      1260
     tattgcgaca ccgtttactt tcccggattg tccgccgccc tacgcgaaca gctgcaccgt      1320
     ggcttcaagt cggcactgcg gtttgtgcac aacctccgac ggcgggacac aacagttgca      1380
     ctgcgtaatt caatcatggg acacgatcta ccagacaatt accaacttcg agtatgctgc      1440
     ttcatgaaaa aggcgttcga gggcaccctg cctgactaca ttatgcagca tctccagcgt      1500
     ggacggcaag agcgcaccgc cggtttcatc atcccacgcc acacgacatc cagcggcaag      1560
     agcgtcctgg tgcacggggc atcttgctgg aacagcctac caatggcaat caaacgagaa      1620
     gctcgtttca acccatttaa gcgagcagtc atcacacaca tgcagaacta gatccagatt      1680
     agattttagt tttttttttc tcacccgttc agagaattga caatttcttt ggctccaaat      1740
     gtacaatctc cttatccctt ccttgccctg atacaaagtg taaactaaca ggatatcgtt      1800
     accaaataaa ttacaattac aattacaatt aca                                   1833
//
ID   Kiri-7_DTa  repbase;    DNA;    INV; 2760 BP.
XX
AC   .
XX
DT   12-JAN-2013 (Rel. 19.10, Created)
DT   12-JAN-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2760
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2829-2829 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..304,271..2628)
FT                 /product="Kiri-7_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP),
FT                 reverse transcriptase."
FT                 /translation="SETWFVSGVSDMSIMCESFNLFRSDRSGRGGGVAIYI
FT                 NKKLNAKTVCVHPETSAIEYIFLNILNKRDNTSILIGCIYRPHKTTEYSEL
FT                 IDLLSTLSLNTQTLVIYPLIKYTDVILAGDFNSNILIEKHLSNDMESLGLF
FT                 PVNFKYPTHFSTTCNTLLDVFYVSDRTKIQNYDQISLPAFSKHDLIFFTYN
FT                 IKLDHHDYYIEYRDFINIDYTSLSADLDSCDWTSIYCTAEVNTQLEILQRK
FT                 VKILYDRTVPLKRKMCKHSAKSWFSSNIKKLIQKRDKSYAKWKRYKTDTFY
FT                 NEFKTNRKLVNETIAEAKRNHFIHKFRHSKNNKNTWSILRELGIGNIKPTL
FT                 SCDTDLDDLNHKFLQLSVPETTYNTYLTPSEPCDRNSCDIIFSFNCVSQCD
FT                 VLNSILSIKSNATGLDDLNPKFLKLILPKILPVITHILNCSITTSTFPTSW
FT                 KIAKIIPIPKSATEYRPIAILPFLSKVLERLIANQIVSFMDAHNVFSEKQS
FT                 GFRKNRSCTTAVIKITEDIRLQMDSGKITLLTLLDFSKAFDTVNHEILLTK
FT                 LSRLYMFSTSATSFMKSYLSQRSQLVATQASKSSILSVKRGVPQGSILGPL
FT                 LFSLYVNDLPNILSKCDMHMYADDVQLYVSCPVSQINECVRVCNTELDRVC
FT                 KWAERNGLSLNPLKSKCIVIFNRFFNTDHLEKLCLNGQPINYVDRASNLGF
FT                 TINSTLSWSNHVNCTVGKMYGILRQLNDTKTFLPINLKMLVAKTKLTPLLF
FT                 YGVEVFGNCDATSQHKLLVAFNNVARYIFNRRRRDRISDATFKIFDMPLKA
FT                 WIEFKTLILLHKIITTAEPKYLFSKLKFSASNRTNNLICQVVKHSYAEKHF
FT                 FICAVRSWNKLPHPIKTIKSATQFKAKLYTHFSN"
XX
SQ   Sequence 2760 BP; 935 A; 538 C; 442 G; 845 T; 0 other;
     atccgaaacg tggtttgtct caggtgttag tgatatgtca attatgtgtg aaagttttaa        60
     tctttttcgc tccgatcgta gtggtcgagg tggaggagtt gcaatttata taaacaagaa       120
     actaaatgct aaaacggtat gtgtccaccc agagacaagt gcgattgaat atatattcct       180
     aaatatctta aacaaaagag ataacacatc aattttaatt ggctgtatct acagaccaca       240
     caaaacaact gaatactctg agctgattga cttgttatct accctctcat taaatacaca       300
     gacgtaattc ttgctggcga tttcaacagt aacattttaa ttgaaaaaca tttgtcaaac       360
     gatatggaat cacttggctt atttcctgtt aactttaaat atcctacaca tttttccact       420
     acctgcaaca ccctacttga tgtattctat gttagtgacc gtacaaaaat tcagaattat       480
     gaccaaatat cgttgcctgc cttttccaaa catgatctga tctttttcac gtacaacatt       540
     aagcttgatc accatgacta ttacatagag tatagggact tcatcaacat agactacact       600
     tcacttagtg ctgatttaga ctcttgcgac tggacctcca tatattgcac tgctgaggtt       660
     aacactcagc tagaaatttt acaacggaaa gttaaaatcc tgtacgacag aacggttcct       720
     ttgaagcgca aaatgtgtaa gcacagcgcc aaatcgtggt ttagttctaa tataaaaaaa       780
     ctaatacaaa agcgcgacaa atcgtatgcg aaatggaaac gctacaagac agataccttt       840
     tataacgaat tcaaaacaaa taggaaattg gtaaatgaaa ccattgctga ggcgaaacga       900
     aatcacttta tacataaatt ccgacattca aaaaacaata aaaatacatg gtcaatttta       960
     agggaattgg ggatcggcaa tattaaacca acattgagct gtgatactga tcttgatgat      1020
     ctaaatcata agttcttgca attgtccgta cctgaaacaa cttataacac ctacctgaca      1080
     ccctctgagc cttgtgatag aaatagctgt gatattattt ttagttttaa ttgtgtcagc      1140
     cagtgcgatg tccttaactc aatcctaagc attaaatcta atgcaacggg tttagatgat      1200
     ttaaatccga aatttttaaa attaatcctt cccaaaattc ttccagtaat aacgcacatt      1260
     ttaaactgct ccatcaccac ttctacgttt cccacatcct ggaaaatagc aaaaataata      1320
     ccaattccca aatcagctac agagtatcga cctattgcta tcctgccttt tttgtcaaaa      1380
     gttcttgaga ggttaattgc taaccaaatc gtgagtttta tggatgcaca caatgtcttt      1440
     tcggaaaaac agtccggttt ccggaagaac agaagttgca caacagctgt tataaaaatc      1500
     actgaagata ttagattaca aatggatagt ggcaagatta ctttattgac gcttttagat      1560
     ttcagtaagg cttttgacac ggtaaaccac gaaatactat taactaaact aagtcgtctt      1620
     tatatgtttt caacctctgc aacaagtttt atgaaatcat acttatctca aagatcacag      1680
     ctagtagcta cacaagcctc taaatcatct attctgtccg taaaacgtgg tgtaccgcag      1740
     gggtccattc ttggtcccct tttgttcagt ctatatgtta atgatttgcc aaatattcta      1800
     tcaaaatgtg acatgcatat gtatgccgac gacgtccaac tatatgtaag ctgtcctgtt      1860
     agccaaatta atgaatgtgt tcgtgtctgt aacactgaat tagacagggt ttgtaaatgg      1920
     gcagagcgca atggattatc cttgaacccc ctcaaatcaa aatgcatagt aatatttaac      1980
     cgatttttta acacagatca tctggaaaaa ctttgcttga atggtcaacc aataaactat      2040
     gtagatcgag cgagcaactt ggggtttaca ataaattcca ctctttcctg gagtaatcat      2100
     gtaaattgta cggttgggaa aatgtatggg atacttagac aactaaacga cacgaaaacc      2160
     tttttaccaa taaatttaaa aatgctcgtt gcgaaaacca agctgacacc attactattt      2220
     tatggagtcg aagtcttcgg aaattgtgac gctactagcc agcataaact ccttgtagct      2280
     ttcaacaatg tagcgagata tatatttaat cgcaggcgca gagatcgaat ctctgacgca      2340
     acttttaaaa tttttgacat gccgctcaaa gcttggatcg agttcaaaac actaatactg      2400
     ctgcacaaaa taataacaac tgccgagcca aaatatcttt ttagcaagct aaaattcagc      2460
     gcttccaata gaacaaataa cctaatttgt caagtcgtaa aacactccta tgccgagaaa      2520
     cactttttta tctgtgctgt acgttcttgg aataaactac cacatccaat aaaaaccatt      2580
     aaatctgcca cgcaattcaa agcaaaatta tacacacatt tttcaaacta gtaattaatt      2640
     taaaaaaaac tttagtcttt aagaaatcaa tgtttgtaat gtcatcattt atttatgttc      2700
     atgaatctga caaattgtga ctagcgcttt aatttataag tatttttttg tacttgtagc      2760
//
ID   Kiri-7_HMM  repbase;    DNA;    INV; 1839 BP.
XX
AC   .
XX
DT   21-FEB-2013 (Rel. 19.10, Created)
DT   21-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-7_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1839
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2808-2808 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1478
FT                 /product="Kiri-7_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="LRXMIIPILDILIPVLTEIFNLSINTSTFPPAWKXAQ
FT                 LTPLPKNRNPSSMSDYRPISILPFLSKILERLVSQQFSKYLVSNNLLNSLQ
FT                 SGFRPGHSTTTALVNVSDDIRSGIDNHQVTLMILLDFXNAFNTIDFDILLS
FT                 IMYSLNISPKVIDWFHSYLYGRKQRIRIQDSYSEWTSVRAGVPQGGVLSPL
FT                 LFSLFINYFCHNLASPYHLYADDLQIYRQCPLHNLPNTITALSQELTNIST
FT                 RSKSLGLIINPKKTQAIIIGSPRLICQITFNDLPDILLDGVIIPFTEKVKN
FT                 LGIIFDQHLSWKPQICEVSRKVFSAVASLRRLRNFLPIPTKVALAQSLLLP
FT                 ILDYADCCYLDLKEEQLNKLERLQNVCVRFIFGLRKYDHISEFRKKLKWLP
FT                 IRFRRNTHVLCLLYNVLFNPSSPSYLKERFKFLCESHNFSLRSQYTLSLKI
FT                 PCHSSSFFTNSFSVKSVRLWNSLPVKIRQSRTLMTFKKRLKEYYLTL"
XX
SQ   Sequence 1839 BP; 520 A; 390 C; 267 G; 658 T; 4 other;
     cattacgtaw gatgatcata ccaatccttg acatcctgat tcctgttctt accgaaattt        60
     tcaacctttc cataaacacc agtacctttc ctccagcttg gaaasaggcc caattaactc       120
     cattgcccaa aaaccgcaat ccttcctcca tgtcagatta ccggcctatt tcaattctac       180
     cwttcctttc aaaaatcctt gaacgtctcg taagccaaca atttagtaaa tatctggtaa       240
     gcaataacct acttaattcc ttacagtccg gctttaggcc tggtcatagt acgactactg       300
     cactagttaa cgtatcagat gatattcgtt caggtataga taatcatcaa gttaccttaa       360
     tgattttgct cgattttast aacgccttta ataccataga ttttgatatt ctattgtcaa       420
     ttatgtattc tcttaacata tctcctaaag tgattgattg gtttcactct tacttgtatg       480
     gtcgcaagca acgtatccga attcaggatt cctattctga atggacctcg gtgcgtgctg       540
     gtgttccgca aggtggcgtg ttgtctcctc tcttattttc tctctttatt aactatttct       600
     gtcacaatct tgcttctccc taccatcttt acgctgacga tcttcaaatt tatcgtcaat       660
     gtccgttgca taatcttccg aatactataa cagcattatc tcaagaactc actaatattt       720
     ctacacgaag caaatcacta ggcttaatta taaatcctaa gaaaacgcaa gctattataa       780
     taggtagtcc aaggcttatt tgtcaaatca catttaacga tttacctgat atattgcttg       840
     acggagtaat aattcctttt actgagaaag ttaagaattt aggaattata ttcgaccaac       900
     atctatcttg gaagccacaa atctgtgaag taagcaggaa agttttttca gctgtcgcat       960
     cactacgtcg attacgtaac tttctaccca tccctactaa agttgcgctg gcacaatcac      1020
     tcctactacc aattcttgat tatgccgatt gttgttacct tgacctaaag gaggagcaat      1080
     taaataaact cgagcgtctc caaaacgtct gcgtaaggtt catctttgga ctccgcaaat      1140
     acgatcatat ttccgaattt cgaaaaaagc tcaagtggct ccctattcga tttcgccgga      1200
     atactcatgt tctttgtctt ctgtataacg ttctgtttaa tccatcttcc ccttcatacc      1260
     tcaaagaacg atttaagttt ttatgtgaat cacataattt ctccctccgc tcccaataca      1320
     cattatctct taaaatccct tgccactctt cttccttctt cacaaattcc ttttctgtta      1380
     aatctgttcg cttgtggaac tctttacccg ttaaaataag gcaatctcga actttaatga      1440
     cctttaaaaa aaggctgaag gaatattatt tgacactttg agaatcttaa gtatagttga      1500
     caaatttaat ttaattaata cgtttactgt tcccacaaaa tcttattata tatgtatatg      1560
     tgtatgtagg tgtgtttgta tgtatgtatt tatgtatgta tgtatgtgta tgtatatgta      1620
     tgtatatgtg tatatatttg cccatttata tattttattt agtactcaga tttatttagt      1680
     acacccctcc taatttaatt aatgctctcc tctatccaaa ggttgcctgg gagagattgc      1740
     tggcttagca ataaggccgc ctattgtgct gttttttgta tcattataaa cacatttgta      1800
     attaattatt tggtgtgcaa taaagaatat tttacttta                             1839
//
ID   Kiri-8B_HMM repbase;    DNA;    INV; 2394 BP.
XX
AC   .
XX
DT   01-MAR-2013 (Rel. 19.10, Created)
DT   01-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-8B_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2394
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2809-2809 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2069
FT                 /product="Kiri-8B_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="NQLPWDTVINSPTIDDKVHIFNSLLTDLFDVHAPLRP
FT                 VKLKHLPAPWLTDDIKXLMSKRNRAKTKYKINPTDVNLSKYKKLRNRCSKV
FT                 CRDAQRKHIHESVSNNSPAKVWKFLDTLGIGRQRKTTLINDRMDLDQLNKH
FT                 FTTVNLLSQRIKSSTLLSLSSLPVPSFTPFSFHSVTVTEIRRHLLSIKSDA
FT                 IGADGVSRKMILMTLNGVLPVLCHIFNNSLSTNSFPSSWRFAHVIPIPKLT
FT                 NPNSFTHYRPISVLPFLSKVLERIVHQQLSLYLTKNNILSVFQSGYRPGHS
FT                 TVTALNKVCDDIRSGIDNQEVTILALLDFSNAFNTIDVDILLAVLKSINIS
FT                 PNATEWFYSYLTDREQCIRVNNKQSSYYRLSAGVPQGGVLSPLLFSIFINS
FT                 LTPLLTVSFHLYADDLQIYTTTAVDDIASAIRRVNFNLSTINTWSKSYGLS
FT                 INPSKSQLCILGNAKQLSKFDCSLLPSVMLDNCKMEFSICVKNLGIRMDNT
FT                 LTWVPQIADLSRKAFAAIGRVKRWKNLLPLKTKISLAQSLLFPILDYADSC
FT                 YLDLXQQLLNKLERLQNVIIRFIFGLRKYDHITEYRVRLKWLTMEHRRNYH
FT                 ALVLLYSILYLPLTPSYLKQRFTFLGSRSQSLNLRSKYDNVLEVPLCRTKC
FT                 YGESFTVKTIKLWNELPRFIRQSTSVNIFKHRLKEYYLSL"
XX
SQ   Sequence 2394 BP; 713 A; 497 C; 389 G; 785 T; 10 other;
     tgaatcagct accttgggat actgttataa actcaccgac aatagacgat aaagttcata        60
     tttttaactc gcttctaact gacctattcg atgtacatgc tcctttacga cccgtcaagc       120
     taaaacattt accagctcct tggcttacgg atgacattaa agstctcatg tcgaaaagga       180
     atagggcaaa aactaagtat aaaattaatc ctacggatgt taatcttagt aaatacaaaa       240
     aattacggaa tcgatgtagc aaagtctgta gagatgccca gcgaaaacac atacatgaat       300
     cagtcagtaa caatagccct gctaaagtat ggaagtttct cgatacctta ggtattgggc       360
     gacaacgtaa aactacactc ataaacgaca gaatggatct tgatcaactt aataaacatt       420
     ttactacagt gaacctctta agccaacgca ttaaatccag tactctctta tcactctctt       480
     cactacctgt tccatctttc actcctttta gtttccattc ggttactgtt actgaaatta       540
     gacgacatct actttccata aagtctgatg caataggcgc cgatggggtg agccgaaaaa       600
     tgattctcat gacattaaat ggtgtgcttc ctgtactttg tcatattttt aacaattccc       660
     tttctaccaa ttccttccct agctcttgga gatttgctca tgttattcct atacctaaac       720
     ttaccaatcc taattctttc actcactata gacctatttc cgtwcttcct ttcctgtcca       780
     aagtactcga gagaattgta catcaacaac tttctttata cctaacaaaa aataatattt       840
     tatcagtttt ccagtctggt taccggccag gacatagcac tgttacagca ctcaataaag       900
     tatgcgatga tataagaagt ggaatagaca atcaagaagt taccatatta gccttattag       960
     atttctctaa tgcttttaat acaattgacg tcgacatatt gttagctgta ctcaaatcta      1020
     tcaacatatc accaaacgct actgaatggt tttattctta cctgaccgac cgtgagcaat      1080
     gcatacgtgt taataacaaa cagtcctcat actatcgact cagtgccggt gtacctcagg      1140
     gtggtgtact ttctccgtta cttttttcca tctttataaa ctctttaact ccactgctga      1200
     cagtgtcctt tcatctttac gctgacgact tgcagattta tacgactacg gcggtkgatg      1260
     atattgccag cgctatacgg cgtgtcaatt ttaacttaag cactattaac acctggagca      1320
     aatcatatgg cctgtccata aatcctagca agtcgcagtt gtgcatcctc ggcaacgcaa      1380
     aacaactctc caaatttgac tgctctttac ttccttccgt aatgcttgat aattgcaaga      1440
     tggagtttag tatctgtgtg aagaatctag gtatcaggat ggataatact ctgacatggg      1500
     ttcctcaaat agcggattta agccgcaagg cctttgctgc tattgggagg gtaaaaagat      1560
     ggaaaaactt attgccgctt aaaactaaaa tatcattagc tcaatctctt ctttttccta      1620
     tactggatta tgcagattcc tgttacctag atttgwcaca gcagttactg aataaactcg      1680
     aacgtctcca aaacgtaata atccgattca tttttggact taggaaatat gatcatatta      1740
     ccgaatatcg agttcggctw aaatggttga ccatggaaca tcgtcgcaat tatcatgcac      1800
     tcgtcctttt atactctatc ttgtatctcc ctttaactcc ttcatacctc aagcaaagat      1860
     ttactttcct gggctcccgs tctcagtctc tcaatctacg ttctaaatat gacaatgtat      1920
     tggaggttcc attatgtcgc accaagtgct atggtgaatc attcaccgta aagacgataa      1980
     aattatggaa tgagctaccg cggttcatca ggcagtcgac atctgtcaac atcttcaagc      2040
     accgtcttaa agaatattac ctgtcgttgt agtctatgta cagtgtatgt attttatgat      2100
     attatgtatg tatgtataat actgtattta tatatatgta tgtttatatg tatatatatt      2160
     actttatata tatatgtatg attgtatgta tgtatatatg tatttattga atatatataa      2220
     atgtatgmta tataacaaaa atatctttgt gcagcgtccg ccaactatgg tctcctgtta      2280
     ttagtwwttg taaataaaag gttgcctgta agagatcact tacagtgata aggccgccct      2340
     tgcgctatgt taaagtacta taattctcat gtatctttac gtatmtttgt gcaa            2394
//
ID   Kiri-8_AAe  repbase;    DNA;    INV; 4584 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4584
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 703-703 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >96%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..1108
FT                 /product="Kiri-8_AAe_1p"
FT                 /translation="MVKGKTNLSVPLGRNNDGNNVKRSRDDLDKSEGDEIE
FT                 NLNDLFVRMQNMFQTTNAKIDVCKTDLQTEISTLREDVHQFKEECTSNINK
FT                 LSDSLTEMRTSVHQNKERISAVEKSNDLILSGVPYVANEDVGQIVQRIAIA
FT                 LGFSEQNTPLMFSKRLAKIPIANGATPPIVIQFAFKLARDDFYRRYFTVRN
FT                 LSLIHIGFNVDKRIFLNENLTDQTRRIKGKAINLRRTGKLYAVFTKDGCVF
FT                 IKPTPEDAAILIRSLDELDAYNPSA"
FT   CDS           1594..4437
FT                 /product="Kiri-8_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPGENFSNASTNVCIPRVVMNCALDSDYLNICHANIQ
FT                 SICARELSKFEEFKLCFHNSKVDVICLSETWLTDNIPDSLIEIEGYNIVRN
FT                 DRIHSRGGGVCIYYKSFLKCKLLSVSEAMVGNGHMSRTEFMFLEIMHNYDK
FT                 FLLCVCYNPPGTDCSELLFDKLGDLSLQYRNVLLLGDFNTNWNKTDSKTER
FT                 FKSCLDNYGLKCLNSMNTHFHHNGSSLLDLVLTNNPEFVLNLNQVSAPAFS
FT                 KHDVLFCSINISKSNEETTRTYRDYSSINVPHLINAFNGINWNLLYSMSDS
FT                 DLALNFFNLQLLRLFNEFVPVRTTKPKKNPWFNQEIANAIVERNIAYRLWI
FT                 ANRSTFNHNQFKRLRNRTTTLINNAKANYVSDNLSASSTSKDLWKRIKNLN
FT                 ISKTSERNDKFDNSIDEINDYFSSNFTFDEDLPSVPPENVYGFRFSEISEN
FT                 DIIISINSIKSNAVGLDEIPLRFIKLLFPSICPIIHYIFNLIVSSSKFPQA
FT                 WKHSKIIPIKKKAKTLNLENLRPISILCGLSKVFERILKYQIQEHIENFDL
FT                 MHTFQSGFRRGHSTTSAFLKVHNDILSVIDRKGVAFLFLLDFSKAFDRVSH
FT                 TKLLKKLSYDFLFSRPAVNLMQSYLSNRSQSVFAGGAFSKTCSILSGVPQG
FT                 SILGPLLFSCFINDLPNVLKHCKIHMFADDVQLYLALEEVDLSLMYQLIND
FT                 DLSRIIRWADENLLQINASKTKVMFISRSTHNYSLPSFRLGNDLLEYVNKA
FT                 SNLGFIIQNNLEWDSHVNNMCSKIYSGLRLLRISSNMLPTSVKLQLFKSLL
FT                 LPHFMYGDVLLINASARAIDRLRIALNCCVRYVYNLSRFSHVSRFHPKLIG
FT                 CPFYDFFKMRSCLTLFKIIRFATPSYLYENLNPFQSYRTRNFIIPRYNTAH
FT                 FANTLFVRGIVFWNQLPNETKNLNTFKSFQQECVKWFNRGNQQN"
XX
SQ   Sequence 4584 BP; 1414 A; 853 C; 806 G; 1511 T; 0 other;
     gtttctgaag ggatgagcga gagtagtgtg tagtgaacct gtggctgtga ttctacggaa        60
     gatttctgct gtttttccaa ctctataaaa gctttctgtg taactggcct catcttctag       120
     tattgcggat gcctggtgta taaaatatta gtcgccaaac tactagttct cccttccaag       180
     acattttttg tgaccgcatc tccgtcactt tgatacggtt gtttgtgaag ttgatacaac       240
     gcctcaaaca ttcaagaact cactacgcta ttgtttcaca tctgttgctg tttgagtggt       300
     acccaacaca atggtaaaag gcaaaaccaa cttatctgtg ccgctgggaa gaaataatga       360
     tggtaacaat gtcaagcgct ccagggacga tctcgataaa tcagaaggag atgaaatcga       420
     gaatttgaat gatctcttcg ttcggatgca aaatatgttc cagaccacca acgccaaaat       480
     agatgtgtgt aagactgatc tgcaaacgga gatatcgacg ctgagagaag atgttcacca       540
     gttcaaagag gaatgtacgt ctaatatcaa caaactatcc gattcgttga ccgaaatgcg       600
     cacctcagtt catcaaaaca aggaacgaat cagtgctgtc gagaaatcga acgatttgat       660
     attatctggt gttccatacg ttgctaacga agatgtgggc caaatcgttc agaggatcgc       720
     gattgctcta ggtttctcgg aacagaacac accactgatg ttctcaaagc gtttagctaa       780
     aatccctatt gcaaacggtg ccactccacc aatagtaata cagtttgcgt tcaaactagc       840
     tagggacgac ttttaccgac gatacttcac tgtacgtaat ctgtcgttga ttcacatcgg       900
     gttcaacgta gataaacgca tcttcctgaa tgaaaatttg acggaccaaa cacgtcgtat       960
     caaaggaaaa gcaatcaact tgagacgcac aggcaaattg tacgctgttt tcaccaagga      1020
     cggttgtgta ttcatcaagc ctactccgga ggatgccgct attctgatcc gttcgttgga      1080
     tgagttagat gcttataacc cttccgctta gtttttctta tcctccccat tcatccatgt      1140
     attctatcct ttattccatg actccatcca tgcctgaaag tcaaatttga aacaaccttt      1200
     ccttttaagc ttttgtataa tcctgcctag ctagtccgtg gctcccatcc ttgagttttc      1260
     cttccaatct tctttcctaa aagtcttgac ctgctgttgg aaatggggga cctgctcggg      1320
     atgaatgctg ctgctgttgt tgaagatact gttgctgctg ttgctgttag atatcgttat      1380
     tgattgctgc ttggatgctt ttctatcgcc attaagaaat taatttgatg ctgatcttcg      1440
     gtagattcac tatgaatgtg ttgaatatga tgattgaact attgaattat tgtaaaatga      1500
     atgattactc attgctcttt ttgattgttg attcctcagg gttgggttac acgacgtgtt      1560
     tatgctggtt tgatcgattg ttactttact acgatgccgg gtgaaaattt cagtaatgcc      1620
     tctacaaatg tgtgtattcc acgagttgtg atgaattgcg cgctggattc agactacctc      1680
     aatatttgtc atgcaaacat tcaaagtatt tgtgcacgtg aattaagtaa gtttgaagaa      1740
     ttcaaattgt gttttcataa tagtaaagtt gatgtaatct gcttaagtga aacctggctc      1800
     acggataaca ttcctgattc actcattgaa atagaagggt ataacattgt tagaaatgat      1860
     cgaattcaca gtcgtggtgg gggtgtttgt atatattata aaagtttttt aaaatgtaaa      1920
     cttctttctg tttcagaagc tatggttgga aatggtcaca tgagccgcac tgaatttatg      1980
     tttttagaga ttatgcataa ttatgataaa tttttgctat gcgtatgcta caatcctcca      2040
     ggaacagatt gttcggaact cctattcgat aaattgggtg atctttctct gcagtaccgc      2100
     aatgttttat tattaggtga ttttaatact aactggaaca aaacggatag taaaacggaa      2160
     cgatttaaaa gttgcttaga caattacggc ttaaaatgct taaattcaat gaacacccat      2220
     ttccatcata atggtagttc tttattagat ctcgttttga ccaataatcc agagtttgta      2280
     ttgaacttaa atcaagtttc ggcacctgct ttttcgaaac acgacgtact tttttgctca      2340
     atcaatataa gtaaatctaa tgaagaaact actcgtacat atcgtgatta tagtagcatt      2400
     aacgtgcctc acctaataaa tgcgtttaat ggcattaatt ggaaccttct ttatagtatg      2460
     agtgatagtg atttagcctt aaacttcttc aacctacaac tactaagatt gtttaatgaa      2520
     tttgtacctg ttcgtacaac aaagcctaag aaaaatccgt ggttcaatca agaaattgca      2580
     aatgcaatag tcgaacgcaa tatcgcttat cgtctttgga ttgctaatag atctactttc      2640
     aatcataacc aatttaaacg tcttcgtaac agaactacta ctttaattaa taatgctaag      2700
     gcaaattatg tgtcagataa cctttcagct tctagtacaa gcaaagattt gtggaagaga      2760
     attaaaaatt taaatatttc caagacttct gaacgtaatg ataaattcga taacagcatt      2820
     gacgaaatca acgattattt cagctcaaac ttcaccttcg atgaggattt accatctgtg      2880
     ccacctgaaa atgtatatgg tttcagattt tccgaaattt ctgagaatga tattataatt      2940
     tctatcaatt ctataaaatc taacgcagta ggcttggacg aaattcccct acgttttatt      3000
     aaacttttgt ttccttccat ttgtccaatc atacattata ttttcaactt aattgtatct      3060
     tcgtcaaaat ttcctcaagc atggaaacat tcaaaaataa ttcctataaa aaagaaggca      3120
     aaaacgttaa acttagaaaa tctccgtcca attagcattt tatgtggttt atcaaaagtc      3180
     tttgagcgga ttttgaaata tcaaattcaa gagcatatcg aaaactttga cctcatgcat      3240
     actttccagt cagggtttcg acgtggtcac agtacaacat ccgcttttct aaaagtacac      3300
     aatgacattc tttcagttat cgatagaaaa ggtgtagcat ttcttttcct tttagacttt      3360
     tctaaagcat tcgatagggt ttcacatacc aagcttttaa aaaaactatc ctatgatttt      3420
     ttattctcta gaccagcagt aaatcttatg caatcatatt tatcaaatcg aagtcaatca      3480
     gtttttgctg gtggagcctt ttccaagacc tgttctattt tgtctggagt accgcaaggc      3540
     tcaatccttg ggcctctttt attttcttgc ttcatcaatg atttacctaa cgttctaaaa      3600
     cattgtaaga tccacatgtt cgccgatgat gtgcaactct atctggctct agaagaagtt      3660
     gatttgtcac ttatgtatca gctaattaat gatgacttgt ctcgcatcat acgttgggcg      3720
     gatgaaaatc ttttgcaaat caacgcttct aaaacaaaag tgatgtttat ttcaagaagc      3780
     actcataact actccttgcc atcgtttcgt ctaggcaatg atcttttgga gtacgttaat      3840
     aaggcatcaa atctaggttt cataattcaa aataatcttg aatgggacag tcacgtcaat      3900
     aatatgtgca gcaaaattta tagcggattg agattgttga gaatttcatc aaatatgtta      3960
     ccaacttcag taaaattaca acttttcaaa tcattgctgc ttccgcattt catgtacggt      4020
     gatgtattac ttataaatgc ttctgccaga gctatagaca gactcagaat agcattaaat      4080
     tgttgtgtac gttatgttta taatttgtca agattttctc atgtgtcacg ttttcatccc      4140
     aagttgattg gatgtccatt ttatgatttt ttcaaaatgc gatcatgtct aactttgttc      4200
     aagattattc gatttgcaac accttcatac ttgtacgaaa acttaaaccc tttccaaagc      4260
     tatcgcacta gaaactttat aataccgcga tataatacag cacactttgc gaatacctta      4320
     tttgtaagag gcatagtatt ctggaatcaa ttaccaaatg aaaccaaaaa cttaaatact      4380
     ttcaaaagct tccagcaaga atgcgtcaaa tggttcaaca gggggaatca acaaaattaa      4440
     taactacgga gtatcagaaa cataatatta agttaaatgt attccttcaa ataatagcta      4500
     attgtagcgc tttaaaagga attttcctta tgctacattg atatgaacaa gtaaataaat      4560
     aaataaataa ataaataaat aaat                                             4584
//
ID   Kiri-8_CQ   repbase;    DNA;    INV; 4061 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiritsubo non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4061
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 127-127 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >97%
CC   identity. Both termini are truncated.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..926
FT                 /product="Kiri-8_CQ_1p"
FT                 /translation="FLLPEAKYGDEVLQLDTXXSSNLRHIAGLLSFPQVTH
FT                 WNHSXFDSDHEWNEENRRQKKSSVSSKDGTNFKRSRDDLDETDDRIQSFDE
FT                 LLTRMKQMFDDTNTRIDTCKSDLQAEFTTLREDVQSFKDRCSVEINNLSDA
FT                 LALTQNNVNLNHERHLKNXKSNDLLLSGVPYHQPEDLLGFVKSASAALGYG
FT                 ERELPLIYTKRLXRPPIAPGSTPPILLQFAFRAARDDFYFRYLSSHNLSLT
FT                 HLGFNVNKRVYLNENLTDQARSIKGAALKLKKSGKLHSVYTKDGFIFVKPA
FT                 EGGEAKLVNSLEQLAE"
FT   CDS           1552..4059
FT                 /product="Kiri-8_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLDNSSATPSQLNCFIPRVVMNCALDSSKLNICHLNA
FT                 QSICARQLSKFNEFKICFSNSKVSIICVTESWLTDNIPDELISLEGYNLIR
FT                 NDRKCARGGGILVYYKSNLTCKILTXSKNDTLNTTEXLLIEIHCNREKFLL
FT                 GVFYNPPRVNCSEIVSSLFSEFSTSYENVVIVGDFNKSGTLSDNFLNAIDH
FT                 LGICCVNSFPTHFHSGGCSLLDLFXTNNTNFVHNFNQVSAGGFSKHDMIFA
FT                 SLNLSSFEDEIYYFRDYNNVNLPALIEAVNSINWSQLFSMXDPDIALDXFN
FT                 QHIRNLFNRFIHLRKYVPRKNSWFNNNIMKAMIERDLAYNIWKTDKNFTNY
FT                 SQFKRLRNKVTHLINEAKSNYVTSRVDSSVSSKDLWNKLKQLNISNKSKPD
FT                 VKFPNSNAEINNYFTSNFTQDLSHPPILPRNNEGFRFSEVNVNDIINAINS
FT                 VKSNAVGMDDIPIRFIKLILPEIIHKITFIFNMIILSSKFPRAWKMTKVIP
FT                 IRKKSRSLDLNNLRPISILSALSKVFEKVLKIQIQTYLDNFNILNSNQSGF
FT                 RKNHNTTSATVKVLDDILSVIDKKGKAFSVFIDFAKAFDRVSHVKLIQKLS
FT                 LQFGFSSGATELLQNYLCNRKQVVFANGLFSDSASIISGVPQGSILGPLLF
FT                 SLFINDLCSVLNHCRIHMFADDVQIYIASNRLSIPQMAQLLNEDLANIYDW
FT                 SCSNLLPINSSKTKVMLFSRNSSEHQQPLIMLGQNVLEYVLKYPSLGFILK
FT                 NDLEWDGHVNAQCRKIYIGLRTLKLSASMLPVNVKLKLFKSLLLPHFMYGD
FT                 VLLLNASSASLNRLRVALNACVRFVYNLNRYSRV"
XX
SQ   Sequence 4061 BP; 1185 A; 829 C; 717 G; 1306 T; 24 other;
     agttcctgct gccagaagcc aaatacggcg acgaagtttt gcagctggac acgagwsttt        60
     cctcaaacct tcgccatatt gccggattac tctccttccc ccaagtcact cactggaacc       120
     actcakcatt tgacagcgat catgagtgga acgaagaaaa cagaagacaa aaaaagtcat       180
     ctgtttccag caaggatggt accaacttta aacgctcgag agacgatttg gacgagaccg       240
     atgaccgaat ccagtccttc gacgaacttt tgaccaggat gaaacagatg tttgatgaca       300
     ccaacacsag aatcgacacc tgcaaaagtg acctgcaggc cgagttcact acacttcgcg       360
     aggatgtgca atcattcaag gaccggtgct ctgtggagat caacaatttg tctgatgccc       420
     tcgcacttac tcaaaacaac gttaatctca atcatgaacg ccacctcaaa aatkccaaat       480
     cgaatgatct gctgctctct ggcgttccgt atcatcaacc cgaagacctw cttggttttg       540
     tgaagagtgc gtcggcggca cttggctatg gcgaacgtga acttccactt atctacacga       600
     agcgattggs tcggcccccg attgcacctg gctcaactcc accgattctg ctgcaattcg       660
     ccttccgtgc tgctagagat gacttctact tccgctattt atcgtcgcac aatctctcct       720
     tgacgcacct tggcttcaat gtgaacaaga gggtttatct gaacgagaac ctgacggatc       780
     aagctcggtc gatcaagggt gcggcactca aactcaagaa gtcaggaaag cttcacagcg       840
     tctacaccaa ggatggattc atcttcgtga aaccggcgga ggggggcgaa gcgaagcttg       900
     tgaattcgtt ggagcagttg gcggagtaac ctttcctagt aaacacccgt tcctaccacg       960
     acaacttcct tgactccttt ccttcttccc cgtgttatct tcccctcctg aaagttcggc      1020
     tatgaatata gcascaacgt tmaacctatc cagatttgct tttctttttt ccttccaagc      1080
     tagtccttgt ttccgatccc tcgttatcct tgactccatc cttcctgaaa gtcttgttcc      1140
     ggctcgtaaa tcaacttcca gctcctcgat ttgatcgagt tgagctcgtt gctgktgatg      1200
     attcgttgct gctgctgccc gttagaatcg ttgggatcac tcctcggctg gaccgagtgg      1260
     agtccgttgc tgtcgctggg tcgttggatc tgctggatgg accgaatckg ttggatcatg      1320
     ctgctgcgcc gtgtcgttgg tgattaaaca cttatatcac actttgttga aacctttttg      1380
     awtatttcca ttcgaatcac aaagagcatg tgtagggatc taaggttcac tttatttgga      1440
     ttktttttat cwtgaactca aacttgtttt tcttagtctt agttattttt aktttgtcct      1500
     cattaaccat ggtgatgcat ttttcaattc cgacttttta tcttttaact aatgctggat      1560
     aatagtagtg ccaccccttc acaattaaac tgttttattc cacgtgtcgt gatgaattgt      1620
     gctctcgact ccagtaaatt gaatatttgt catctcaatg ctcaaagtat ttgtgctcga      1680
     cagttgagca agttcaatga atttaaaatt tgctttagca acagtaaagt aagcataata      1740
     tgcgtaactg agtcgtggct aaccgacaac atacccgatg aactaatttc tcttgaaggt      1800
     tataatctaa taagaaatga tcgaaaatgc gctcgtggtg gaggaattct tgtgtactat      1860
     aaatccaacc taacctgtaa aatwttgact ttwtctaaaa atgatacatt gaacacaact      1920
     gaatwtttac tgattgaaat tcattgcaat agagaaaagt ttttgctggg tgttttttac      1980
     aatccacctc gtgttaactg ttctgaaatt gtgtcctctt tattttcaga attttcwact      2040
     agttatgaaa atgtcgttat tgtaggcgat tttaacaaat caggaacact ttcmgataat      2100
     ttcttgaatg ccatagatca tcttggaatt tgttgcgtka attctttccc gacacacttc      2160
     cacagtggag gttgttctct tttagatctt ttttwaacaa ataatacaaa ttttgttcac      2220
     aattttaatc aagtctcagc tggtggattt tcaaaacatg atatgatttt tgcatcgtta      2280
     aatctaagtt cttttgaaga tgaaatatat tacttcaggg attacaataa tgtcaattta      2340
     cctgccttaa ttgaagcagt taattccatt aactggtcac aattattttc tatgmgtgat      2400
     ccggacattg cacttgactw tttcaatcaa catattcgta acttatttaa ccgttttatt      2460
     caccttcgca aatatgtacc tagaaagaat tcctggttta acaacaatat tatgaaagca      2520
     atgatcgaaa gagatctcgc atataatata tggaaaactg ataagaattt tactaattac      2580
     agtcagttta agagattgag aaataaagtc acacatctca tcaatgaggc taaatctaat      2640
     tatgttacat ctcgagttga ttcttcagtg tctagtaaag acctttggaa caagttaaaa      2700
     caactaaata tttctaataa atcaaaacct gatgtgaaat tccccaactc taacgcagaa      2760
     atcaacaact attttacctc aaattttact caagatttgt cacaccctcc aatattacca      2820
     aggaacaatg aaggctttcg tttttcagag gtaaatgtta atgatataat taatgcaatt      2880
     aattcagtga agtcaaatgc agtaggtatg gatgatattc ctatccgttt tattaaactt      2940
     attttgcctg aaatcattca taaaataact ttcattttca atatgatcat attatcatca      3000
     aaatttcccc gagcttggaa aatgactaaa gttataccaa tcagaaaaaa gtctagaagt      3060
     cttgatttga acaatttacg cccgataagt attctttctg cactttcaaa agtctttgag      3120
     aaagtattga aaatccaaat ccaaacctat ttggacaatt ttaatattct taacagtaat      3180
     caatcaggat ttcgaaaaaa tcataatacg acttcggcta cagttaaggt actagacgac      3240
     attcttagtg taattgacaa aaagggaaaa gctttttcgg tctttatcga ttttgcaaaa      3300
     gcatttgatc gcgtgtcaca tgttaaatta attcaaaagt tatcactgca attcggattt      3360
     tcatctggtg ccacagaatt gttacaaaat tacttatgta acagaaaaca agttgttttc      3420
     gcaaatggcc ttttttctga ttcagccagt attatttcag gcgtacctca aggttctatt      3480
     ttagggccgc ttttattctc cttattcatt aatgacctgt gctccgttct aaatcattgt      3540
     agaattcaca tgtttgctga tgacgtccag atttacatag cttctaatag gctgtctatt      3600
     ccacaaatgg cgcaattatt aaatgaagat ttagctaaca tttatgactg gtcatgttct      3660
     aatcttctac caattaactc atccaaaact aaagttatgc tcttttccag aaacagctca      3720
     gaacatcagc agcctttaat aatgctcggt caaaacgttc ttgagtatgt gcttaaatat      3780
     ccaagtcttg gcttcattct aaaaaatgat ttagaatggg atggtcatgt gaatgcgcaa      3840
     tgtagaaaaa tctatatcgg acttagaact ttaaagctct cagcaagtat gttaccggtt      3900
     aatgtaaaac tcaaactctt taaatcccta ttgttgccac atttcatgta tggtgatgtt      3960
     ttgctattaa atgcttcatc tgcttctttg aacaggttaa gggtagcttt aaacgcgtgt      4020
     gtacgatttg tatacaattt aaatagatat tcgagagtga c                          4061
//
ID   Kiri-8_DTa  repbase;    DNA;    INV; 4607 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.10, Created)
DT   30-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4607
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5925-5925 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1248
FT                 /product="Kiri-8_DTa_1p"
FT                 /translation="MSLTSAPANKRLRSNTNNIVSPTERMSDAPPPWLLEM
FT                 LNSRFKEQTEQIASYVRDAEERILGGLTSRLDCIAAEMKQFGERVTIVEGE
FT                 VAQLRAGRNQLIERVKHLDREVGELTTLRERVGEIEAKLAAQQMANQACDL
FT                 RVHGIPFVEGENLKVLYNTLCFSLKLAAPPKIKALFRARKTQNSSVDPVVI
FT                 IRMENQHEKITLLRCIGAYRRAVNQQLSLHMMGFDSQAALYVNEQLLREHY
FT                 IIFKELKKRRLFSAVFTRRGLVHIRCNDKIYCIESMDQLLALSQDADKLAS
FT                 SRSSQLSTSPRAATSSSVVDGIAANCQGFRR"
FT   CDS           join(1151..1480,1458..1742,1730..2503,2491..4287)
FT                 /product="Kiri-8_DTa_2p"
FT                 /translation="PLLALLNYLHLRALQLRHLWWTESLRTVRDFAADMFL
FT                 YLNLIITRFFKSKYSFYIRHKISQTLKNTTLLIRYLTLSQDSFLFLIVVLR
FT                 LILISKSIGAYALLIVWSVDDGLSGLSMMDDNDCSLSASSYTMLRVLGNQR
FT                 NGLRVCHINAQSLVNKIEEFRYLFVSSNIDVICLSETWFSSYVSDSLVECN
FT                 GYDIFRSDRGSHAGEPRWGVALYVNKRLNAKFVCKHPSDSSVEWIFVQITN
FT                 TLYSSKTLIGCVYRPNRSIDYQNLIDLLSSMSIQYSDVILAGDFNSNILKE
FT                 NKLSDDIGSIGLNLVNSSVPTHFSNHCDTLLDLFFVTDCDKMSMYSQLSMP
FT                 MFSKHDLIYNINTDFTENHIVYRDFKNIDYTLLSNDYNLCDWDSIYDHTNI
FT                 NSQLTVLQNNIIYLYNRSVPFVTKMTKPRENPWFNSAIKVLIDKRDTAFKK
FT                 WKRYKTSQHAVQYKMFHNNVSQLINQEKRKYFFNRFNRATTSQQKWADIKK
FT                 LGIGKTKTNRCDANPDELNQKFLDCKVPEVTKDDYIDHLPQNTYRNCDNIN
FT                 CGCDNGTCDSSFSFVCVTESDVLKSMLLIKSNATGVDDINPKFIKILLPKI
FT                 LPYITFIYNTALTQSIFPDSWKLAKIIPVPKSANEYRPISILPHLSKVFER
FT                 LMAGQMTNYLASRNILTDKXSGFRVGRSCTTAIIKIVEDIREKMDTDNITF
FT                 LTLLDYSKAFDTVNHEILCIKLKRLCNFSRSSVQLICSYLSNRGQSVFVNN
FT                 VYSSFLCLKRGVPQGSVLGPLLFSVYVNDLPSNMSNCEVHMYADDVQMYVS
FT                 RPIRRINECISVCQTELEIVSQWAKINGLGLNPKKSKCVVVGKRVMATGAL
FT                 EKLSINNAPLEYVKTAINLGFTFNQTLTWDDHINKSVGKMYAILRNLYLTK
FT                 DFLPTKIKETIAKMYLIPVLFYGLEVFSDCSSVGQRKLQVAFNNVARYIYN
FT                 RQRADHISDVTTKIFNMPLKSWTNLRALLLLHKIISKQEPLYLYEKLIFSS
FT                 SRRTRNIMSIKYKYLCTRRQFLVYAVRNWNQLPHTIKAISNEAQFKNALQE
FT                 YFKTN"
XX
SQ   Sequence 4607 BP; 1541 A; 860 C; 857 G; 1347 T; 2 other;
     cgaacggacg tgttttctct aagctccaaa gaaaaatagt tttcactctg aacttatagt        60
     taaaataagc gtagacacca gttaaaaggg tactaagatc tcgctttcac tgtgaatact       120
     gcaagtcttt ttggataccg gccaggttgt catataaact gattaaaata accaaagaaa       180
     caaataaaaa ttgaacgccg cattcatact tgtgcacgaa catcgaactt accaccgtcg       240
     aacttatctg tccacactct tcacactctt caagttgcca tgtctttaac ttcggctcca       300
     gcaaacaagc gacttcgcag caacaccaac aacattgtga gtcccaccga gcgcatgtct       360
     gatgccccgc cgccgtggct cctagagatg ctcaactcgc gcttcaaaga acaaactgag       420
     caaatagcat cctatgtgag ggacgcagag gaacgtattc taggcggtct tacgagccgc       480
     ttagattgca ttgcagccga gatgaagcag tttggcgagc gtgtcaccat cgtggagggc       540
     gaagtggcac aattacgcgc tgggaggaat cagctgattg agcgcgtcaa gcatctggat       600
     cgggaggttg gcgagctgac caccctgaga gagagagtgg gagagatcga ggcaaaactg       660
     gcagcacaac aaatggcaaa tcaggcgtgt gacttacgcg tacatggaat tccatttgtt       720
     gagggggaaa acttgaaggt gttgtacaac acgctctgtt tttcacttaa gctagcagcg       780
     ccaccgaaaa tcaaggcgct attccgggcc agaaaaacac aaaactcttc tgttgacccg       840
     gtggtcataa tacgtatgga aaatcagcac gaaaaaatca cgctgctgcg ctgtatcgga       900
     gcttatcgtc gcgcagtaaa ccaacaacta agtttgcata tgatgggctt cgactcacaa       960
     gctgctcttt atgtcaatga gcagcttttg agagagcact atataatatt taaagagctt      1020
     aaaaagcgca gactgttctc tgctgttttt acccgcagag gtttagtcca catcaggtgc      1080
     aatgataaaa tctactgcat cgagagtatg gatcagctgt tggcgctctc gcaagatgct      1140
     gataagctag cctcttctcg ctcttctcaa ttatctacat ctccgcgcgc tgcaacttcg      1200
     tcatctgtgg tggacggaat cgctgcgaac tgtcagggat ttcgccgctg atatgttcct      1260
     gtatcttaat ctaattataa ctaggttctt taaatctaaa tattctttct atattagaca      1320
     taagatttcc caaactctta aaaatacgac tctcttaatt aggtatctca cactctctca      1380
     agactctttt ttgtttttaa tagtggtgct tagactaatt cttatatcaa aatcaatagg      1440
     tgcgtatgcg ttactgattg tctggtctgt cgatgatgga tgacaatgat tgttccctga      1500
     gtgcgagcag ctatacgatg cttagagtac ttggtaatca gagaaatggc cttcgtgtat      1560
     gccatattaa cgctcaaagc ttagtgaata aaatcgaaga atttaggtat ttatttgtta      1620
     gttctaacat tgatgttatt tgcttgtccg aaacgtggtt ttcgtcgtat gtcagtgatt      1680
     cgttagtaga gtgtaatggt tatgatatct ttcgttccga ccgtggtagc cacgctgggg      1740
     agtagcctta tatgtaaaca aacgtcttaa tgcaaagttt gtctgtaaac atccgagtga      1800
     tagctccgtt gaatggatat ttgtccagat cacaaataca ttatactcat caaaaacttt      1860
     aataggctgt gtttatagac caaaccgatc tattgactac caaaacttaa ttgacttatt      1920
     gtcctctatg tctatacaat attcggacgt tatccttgct ggggatttca acagcaatat      1980
     tctaaaagaa aataaattat ccgacgacat cggatctatt ggtttaaatt tagtaaactc      2040
     atcagtacct acacattttt caaaccactg tgatacttta cttgatttat tttttgtaac      2100
     tgactgtgat aaaatgtcca tgtatagtca actttcaatg ccaatgtttt caaaacacga      2160
     cctaatttat aatattaata ctgactttac tgaaaaccat atagtttata gggattttaa      2220
     aaatattgac tacaccttgc taagtaacga ctataattta tgtgactggg actctattta      2280
     tgaccataca aatattaatt ctcaattgac tgtcctacaa aataatataa tatacttata      2340
     taatcgatca gtaccgtttg tgacgaaaat gaccaagcca cgtgaaaatc catggttcaa      2400
     ttcagcaatt aaggtactta ttgacaaacg ggatactgca tttaaaaaat ggaagcgata      2460
     caagacaagc cagcacgcgg tccaatataa aatgtttcac aattgattaa tcaagagaaa      2520
     cgcaaatatt tctttaacag atttaatagg gcaacaacga gtcagcagaa atgggctgat      2580
     attaaaaaac taggcattgg taaaaccaaa actaatcgat gtgatgcaaa tcctgatgaa      2640
     ctaaaccaaa aatttttaga ctgcaaagta cctgaagtaa ctaaagatga ctatattgat      2700
     cacctacctc aaaatacata tcgaaattgt gataatataa attgcggctg tgataatggt      2760
     acctgtgata gtagttttag tttcgtgtgt gtaactgagt ctgatgtcct taaatcaatg      2820
     ttactaatca agtcaaatgc tactggagtc gacgacataa acccaaaatt tataaagata      2880
     ctattgccaa aaatattacc atacataact tttatatata atactgcctt gacacaatca      2940
     atatttcccg actcttggaa attagctaaa attatacctg tcccaaaatc tgcaaacgaa      3000
     tataggccaa twtcaatctt accacatttg tctaaagtct tcgaaagact tatggctggt      3060
     cagatgacca attatttagc aagtaggaat atactaaccg ataagcwatc agggttccgt      3120
     gttggcagaa gctgtaccac agctataatt aaaatagttg aagacatcag ggaaaaaatg      3180
     gatactgaca acataacatt tttgactctt ttagattata gtaaagcatt tgatacggta      3240
     aatcacgaaa ttctttgtat taagttaaag cgtctatgta atttctcgcg ctcatcagtg      3300
     caacttattt gttcctatct aagcaatcgc ggtcagtctg ttttcgtaaa taatgtgtac      3360
     tcgtcttttc tttgtctgaa gcgtggtgtg ccgcaaggat ccgtcctagg tccactactg      3420
     ttctcagtgt atgtaaatga tttacctagt aatatgtcaa actgtgaagt acacatgtat      3480
     gctgatgatg ttcaaatgta tgtaagccgt cctattcgta gaattaatga atgtataagt      3540
     gtctgtcaaa ctgaattgga aattgttagc cagtgggcga aaatcaatgg gctaggatta      3600
     aacccgaaaa aatcgaaatg tgttgtggta ggtaaaagag tgatggctac cggtgcattg      3660
     gaaaaattat ctattaataa tgctcctctt gagtatgtga aaactgcaat taatttagga      3720
     tttacgttta atcaaacatt gacttgggat gatcacatta ataaatctgt gggaaaaatg      3780
     tatgcaatac ttagaaacct atacttgacc aaagacttct taccgaccaa aataaaagag      3840
     acaattgcaa aaatgtacct tataccggta cttttctatg gtctagaggt atttagtgac      3900
     tgcagctccg taggtcagcg caagctgcag gtagcgttta ataatgtggc aagatatatt      3960
     tataatagac agagagctga ccatataagt gacgttacaa ctaaaatctt taacatgcca      4020
     cttaaatcct ggacaaacct tagggcccta ttactactcc ataaaattat aagcaagcaa      4080
     gagccgttgt acctatatga aaaacttatt tttagttcgt caagaagaac cagaaacata      4140
     atgagcatta agtataagta tctatgcaca agaaggcagt tccttgtata tgctgttcgt      4200
     aattggaacc aacttccaca tactatcaag gcaatcagta atgaagctca atttaaaaac      4260
     gcactgcaag aatattttaa gacaaattaa tagcaccacc agaacctaga gagaaagtga      4320
     gagtaacaaa aaaaaatcaa aaattacagg ttaaaattaa aataaactaa ctaaaaatta      4380
     agaattcaaa aattttaaaa aaaataaaaa aaattaaaaa ttataatcaa catttaaaat      4440
     aaaagtcaat taaaatagta atagtagtaa gtgccgacac aaatgttagc atataagtta      4500
     agctttaagt tcagccttca attgtacacc cgtgactagc gccttaattt ataagtatgc      4560
     tacatgcttg tagcgctggg atagaaacaa tcaaataaat aaataaa                    4607
//
ID   Kiri-9_AAe  repbase;    DNA;    INV; 3351 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   16-FEB-2011 (Rel. 16.02, Last updated, Version 1)
XX
DE   A Kiri non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3351
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 704-704 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           468..3206
FT                 /product="Kiri-9_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="NICHINVQSLIARNFTKFHELKLTFIDSKVDIICFTE
FT                 TWLNHTISNTMIGIEGYKLIRNDRNRHGGGICIYLRNSLLYKVVSMSQSSS
FT                 NDFYGTEYLNIEIKVGFDKVLLGVIYNPPNIDCIDVLHDILENCTINYDCS
FT                 FFVGDFNTDILKFSSRSRRFGEMLDAMSYECMNSEPTYFHQSGCSLLDLFI
FT                 TDSPDFVAKLDQISMPGVSNHDLVFCSLRLSLNRVEDIVQYRDYVNFDSSA
FT                 LLDGFYNIEWNNLFCMEDPNEILNFINYHILKLHDDFIPLRRKKKNRTPWF
FT                 NSDISHAFINRNLAYDQWKRSRTEIDRNTYKRLRNFANDLVRQAKINHDKQ
FT                 NFNVDLPSKQLWKNIKKLGISNDSSFLDQDCLNANQINDYFISNYINDSSS
FT                 VPIPFSSDGFKFNVFHEEDIVNSIFSIKSNAVGLDNIPIRFIKILLPIALP
FT                 VYKFLFDSIIKTSVFPRAWKNSKVIPIKKKGNSASLSNLRPISILSSLSKV
FT                 FEKLLKIQITKFITDNDLLHPLQSGFRQNHSTNSALIKVHDDIARVIDRRG
FT                 IAVLLLIDFAKAFDRVSHSKLVKKLSSKFSFSHNAVKLIESYLNERKQAVF
FT                 YNGVLSDFSFIESGVPQGSVLGPLLFSLFLNDLPASLEFCSIHMFADDVQV
FT                 YLCASDDVDMNDFARKINHDLNNILRWSQNNLLAVNPSKTKAMLICKLKNR
FT                 PLPPSIYFDGKRVQFYDKLENLGVIFTSNLCWDAFINGQCGKIYGTLKKLN
FT                 LTTKHLDTAMKIKLFKSLILPHFIYCDFLFSNATASALNRLRVALNACVRY
FT                 VFNLTRYSHVSHLQDVLLGCQFSKFYSFRACLQVYIIIKRKTPRYLYDKLQ
FT                 FMRNTRTMSLVIPNHSSAYYGQSLFVRGINNWNRLSPTLKSTANIYGFKGG
FT                 LLRELERLQ"
XX
SQ   Sequence 3351 BP; 1024 A; 579 C; 584 G; 1163 T; 1 other;
     atgaactgtt ccactcctaa aagttatatt gggaagctac tgtttcccct tctgctgctg        60
     ttgttgctgt gtgctgttga tgctactgct gttgctgctg ggaggcgttg ctgtcgaata       120
     agatttttct gctgctctcg attgtggtga attagatcaa attagacttt ttcgttttcg       180
     gcatattagc agacattatt tagctgtttt ttctttgtaa tgtgcttttc tctaatgtca       240
     aatgaacttc agactaaaag ttaatcacaa tgaacatatt agtagttagt agttttgctt       300
     ttcctgattt ctacactgca tgttgcttgg gttcgatggg tagactgctt ttgaagccta       360
     tactgttcaa catttagata tggatgactt ttcccttgat aatgcttctc cgaacaatgt       420
     aattccacgt gttgttctta atgctgcatt aaaacatgac tgtttgaaat atctgccata       480
     tcaatgtcca aagtctaatt gctagaaact tcacgaaatt ccatgaattg aagctaactt       540
     ttatagatag taaagtcgat atcatttgtt ttactgaaac atggctgaac cacactatta       600
     gcaatactat gattggtatt gagggttata aactcataag aaatgatagg aataggcatg       660
     gtggtgggat ttgtatatat ttgcgaaaca gtttgttata taaagttgtg tcgatgtccc       720
     agagttcatc caacgatttt tatggtaccg agtatcttaa tattgaaatt aaagttggtt       780
     ttgacaaagt tctgcttggt gttatttata atcccccaaa cattgattgc attgacgttt       840
     tgcacgatat cttagagaat tgtactatca actatgactg ctccttcttc gttggcgact       900
     tcaatacaga catactcaaa ttctctagtc gatcacgtag gttcggtgaa atgttagatg       960
     caatgtcgta cgagtgtatg aactctgaac caacttattt ccatcaatcc ggatgttccc      1020
     tgcttgacct ttttataaca gattcacctg actttgttgc aaagctagat caaatttcta      1080
     tgcctggagt atctaatcac gatttagttt tctgttcttt gcgattatca cttaacagag      1140
     ttgaagatat tgtccaatac cgcgactacg tgaatttcga ttcaagtgca ttactggatg      1200
     ggttttataa tattgaatgg aataatttgt tttgcatgga ggacccgaac gaaatactta      1260
     acttcataaa ttaccacatt ctcaaacttc acgacgattt catacctcta cgtcgcaaaa      1320
     agaagaatag aaccccttgg ttcaacagtg atatttctca tgcatttatt aatagaaatc      1380
     tggcctacga tcaatggaag cgttctagaa ctgagattga cagaaacact tacaagcgcc      1440
     ttcgaaattt tgcgaatgac ttggtcaggc aagcaaaaat caatcacgat aagcaaaact      1500
     tcaacgttga cttgcctagc aagcaactat ggaaaaacat taaaaaatta ggaatatcta      1560
     atgattcaag ttttcttgat caagattgtt taaatgcaaa ccaaataaat gactatttta      1620
     tctccaatta tattaatgac tcgtcgtctg ttccaatacc attttcttct gatggtttca      1680
     aattcaatgt ttttcatgag gaagatattg tcaacagtat tttctcaatt aagtcgaatg      1740
     ctgttggctt ggacaatatt ccgattaggt ttattaaaat attgttacct attgctttgc      1800
     cagtatataa gtttctgttt gattccatta ttaaaacatc tgttttcccg agagcttgga      1860
     agaactctaa agtaataccc ataaaaaaga aaggaaacag tgcttctctt tcaaatctac      1920
     ggcctataag tatactgagt tctttgtcta aagtttttga aaaactactc aaaatccaaa      1980
     ttactaaatt tattactgat aatgatcttt tgcatccgct tcaatctgga ttccgtcaga      2040
     atcacagtac aaattcagct ttaatcaaag ttcatgatga cattgctcgt gttatagatc      2100
     gcagagggat tgctgtttta cttctaatcg atttcgctaa agcttttgat agagtttcgc      2160
     actctaaact ggttaagaag ttgtcatcaa aatttagttt ttctcacaat gctgttaaat      2220
     taatcgaatc ttacttgaac gaacggaaac aagctgtttt ctacaatggt gttttatctg      2280
     atttcagttt tattgaatct ggagtacccc aaggctccgt gctggggcca ctactgtttt      2340
     cgttattttt aaatgaccta ccggcaagtt tagaattttg ttcaattcat atgtttgctg      2400
     acgatgttca agtatacctc tgtgcgtccg atgatgttga catgaatgat tttgctagaa      2460
     aaattaatca tgatttaaat aatatattga gatggtcaca aaataatctt ttggctgtga      2520
     acccatcaaa aaccaaagca atgcttatat gtaagcttaa aaaccgccct ctaccgcctt      2580
     caatttattt cgatggtaaa agagtacagt tttatgataa attagaaaat ttgggagtaa      2640
     tttttacttc aaatttatgt tgggatgcat ttattaatgg gcaatgcggt aaaatatacg      2700
     gtactttaaa gaagctgaat ctaactacaa aacacttaga cacagctatg aaaattaaat      2760
     tgttcaaatc cttaattctg cctcatttta tatattgtga tttcttgttt agtaatgcga      2820
     cagcttctgc actmaacaga ctacgggttg cgcttaatgc atgtgttaga tatgtgttca      2880
     atcttactag gtattctcat gtatcccact tgcaagatgt tttgttagga tgccagtttt      2940
     ctaaatttta tagttttaga gcctgtttac aagtgtacat catcatcaaa cgtaaaacgc      3000
     ctcgctatct ctacgacaag cttcaattca tgagaaatac gagaactatg agcctagtaa      3060
     tacccaatca ctcatctgca tattacggac aatcattgtt tgtgagaggc attaacaatt      3120
     ggaatcgttt gtctcctacc cttaagtcaa ctgctaatat ttatggtttc aaagggggtt      3180
     tgcttagaga acttgagcgc ttgcagtaga acattcagga aaatcgaatt caggaacata      3240
     attcgagtta gttaaatagt tttaatggaa tcaccacagt gtaacatttc aagaaggagt      3300
     ttccttacgt tacataaatt caaataaaga aataaataaa ataaataaat a               3351
//
ID   Kiri-9_CQ   repbase;    DNA;    INV; 4506 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A Kiri non-LTR retrotransposon family from Culex quinquefasciatus
DE   - consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4506
RA   Kojima K.K. and Jurka J.;
RT   "Kiri non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 128-128 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
CC   This family and related Kiri elements found in two mosquito
CC   species, Culex quinquefasciatus and Aedes aegypti, constitute a
CC   distinct lineage belonging to the CR1 group. The phylogenetic
CC   analysis with PhyML indicates that Kiri is a sister lineage of
CC   the L2 clade. Although several Kiri elements do not encode two
CC   proteins, probably due to 5' truncation, Kiri elements generally
CC   encode two proteins. Their ORF1 proteins commonly contain an
CC   L1-like RNA-binding domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..982
FT                 /product="Kiri-9_CQ_1p"
FT                 /translation="MSFKRSREDLTKSDSEDEPVQSLDQLFSRMKSMFEET
FT                 NERIECCKTDLQSEFAVLRDDMQQFKAECTNNVNKLSAELSKTQDNVSLNY
FT                 ERILICGKLNDLLLSGVPYQSSENISNYVRSVSLALGYSDQDRPLIYTKRL
FT                 ARLPIADGAAPPLLLQFTFRAARDEFYRRYLSSRNLSLSHLGFTINKRIYL
FT                 NENLTELARAIKGSALKLKKDGKLHSVFTKDGFVQVKTRAEDEARPVLSME
FT                 QLTN"
FT   CDS           1546..4377
FT                 /product="Kiri-9_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLANNGLAPNTNQSSSIPRIVMNCAMESDKLNICHLN
FT                 VQSLCARGLSKLEEFKQCFTNSKANIICVTESWLTEKIEDELISLDGYKLV
FT                 RHDRNMQTRGGGICVYFKTGINCKILSCSKNESNNITEFMLFEMEIAGEKV
FT                 LLGVFYNPPRVDCATVLSQKLADHSLHYNKIIFIGDFNTDIRKSCTLTDNF
FT                 LNVTDTYGLSCINTLPTHFHYGGSSMIDLLLTNDPDFVLKFNQVSASCFSR
FT                 HDIIFSTLNLNTSNTSNFSLFRNYNKINFQALDHAVASINWNLLYSITDSE
FT                 IALDFFNVNIKQLFENFVPLCKYIPRKNPWFNNDILKAMIERDLAYGLWKA
FT                 DRSTLRFDEFKRLRNRVTNLINIAKSKYVANRLNTAESSKVLWKKLKVINV
FT                 KSKQPRVEQFLNSNNEINYHFSSNFTQDNTPPHTLLPNNNGFKFSTVDIND
FT                 VILALSSMKSDAIGLDQIPLKFIKLILPLIVDKITYIFNLAISTSKFPRAW
FT                 KSAKIIPVKKKPRSLALDNLRPISILPALSKAFEKILKAQIQTYLNNFDYL
FT                 HRFQSGFRSKHSTTTALLKVHDDILKVIDRKGVALLLFIDFSKAFDRISHS
FT                 KLINKLSLKYNFSIEAAKLIQSYLTGRSQSVLSGGTLSIPIDIISGVPQGS
FT                 ILGPILFSLFINDLPTVLKNCMIHIFADDVQLYLASNSXPVTEMARLLNDD
FT                 LCEILRWSTRNLLPINPSKTKVMFISRNRGVSTLPEIIFEQNVIEYVTEAS
FT                 NLGIIMQNNLEWDCHINGQCRKIYNGLRHLRMTSSMLPIQTKLKLFKSLLL
FT                 PHFMYGDVLFLNAAANSINKLRVALNACVRYVYNLSRYDRVSHLQHNLLGC
FT                 SFNNFYELRSCLTLFKIINTSTPRYLVDKLLNSRSTRTRNYIIPQHRSSHY
FT                 NESFFVRGVANWNQLPVSIKNIHSPIEFRKECINWFGMRN"
XX
SQ   Sequence 4506 BP; 1367 A; 895 C; 783 G; 1458 T; 3 other;
     tttctgaccg tatcgtgttt tggagttgtg amgttctatc cgaagcagct gtggttcctg        60
     gagtacgtgc agatcgtcta ctwgttgtgg agttgtgggc gataaagttt tgccgaaacg       120
     agccatcatc ttctacccag gccacgccat tttgctacga taaatctcct agtggcactc       180
     acggttcatc tctcgttcac ccgctgatac acacactact ttgatcagaa tcaaaacaaa       240
     accaacgatg agcttcaagc gatcgaggga agacttgacc aaatcagact cggaggatga       300
     gccggttcaa tccctggacc agctcttttc tcgaatgaaa tctatgtttg aggaaaccaa       360
     cgagaggatt gaatgctgta agacggatct gcagtctgaa tttgctgttc ttcgcgacga       420
     catgcagcaa ttcaaagccg aatgcaccaa caatgtcaac aagctgtctg ctgaactatc       480
     caaaacccag gacaacgtca gcctcaacta tgaacggatc ctcatttgcg gtaaactaaa       540
     cgatctgctg ctgtctggtg tgccgtacca gtcttcggaa aacatctcaa attacgttag       600
     gagtgtttcg cttgccctgg gttacagcga tcaagatcgt ccgttgatat acacaaaaag       660
     gctggctcgt cttccaatcg ctgacggcgc tgctcccccg ttgctgctcc agtttacctt       720
     cagagctgca cgagatgaat tttaccgacg atatctctca tcgcgcaacc tgtcgctgtc       780
     acacctgggc ttcacgatca acaagcggat ctacctaaac gaaaatctga cggaactggc       840
     aagagcaatc aaagggagtg ctcttaagct gaagaaggat ggcaaactgc acagtgtctt       900
     caccaaggat ggattcgtgc aagtgaaaac ccgtgcggag gatgaagctc ggccagtact       960
     ctcaatggag cagctgacca attaaccctt tccttaaagc gctctctctt ccttcctaca      1020
     acatccatga ctcccatcct taatcccggt gttttcatcc ttcctgaaag ttaaacctct      1080
     cctgaacaag cttttctttt ttccttccaa gttaatccgt gactcctatc cttagttagt      1140
     ccatgactcc ttccttcctg caagtcttgc tgtactatct ctggatgctg cgaacgtgct      1200
     gttggtgtgc tgggaacgct gctgctgctg ttttggatgc tgttgctgta cgagtgctgt      1260
     tgaaccctgc tgctgcttgc ggcggttttt ttgcacttct gacctgctga ggactgccct      1320
     taagtataat tcttccgtct atccctttca acactaccct tctctattct accctattca      1380
     ttttgcgcta ttcttcatga atcacaccct gttagaagtt gtaataattg gcttaaatgg      1440
     tgattataat aatgattgac gatcactctt tattgttttg ctttgttaat ttcaaaatgc      1500
     caacctggaa tatgcattta ccgttaattc cgtcatttgt tcgcgatgtt ggctaataat      1560
     ggtttagccc cgaatacaaa tcaaagctcg tccattcccc gtattgtgat gaactgtgca      1620
     atggaatctg ataagctcaa catatgtcat ttaaatgtcc aaagtttatg tgcgagaggt      1680
     ttgagcaagc ttgaagaatt taagcaatgt tttactaata gtaaagcgaa cataatttgt      1740
     gttactgaat cttggcttac tgaaaaaatt gaagatgaat taatatccct tgatggatac      1800
     aaattagtga gacatgatag aaacatgcaa actcgtggag gtggtatttg tgtgtatttt      1860
     aaaacgggta ttaactgcaa aattttgtca tgttccaaaa atgaatctaa taatataact      1920
     gaatttatgc tttttgagat ggaaattgca ggtgaaaaag ttttacttgg tgttttctat      1980
     aatcccccga gagttgattg tgcaactgtt ctttctcaaa agctagcaga tcattctcta      2040
     cattacaata aaataatttt tataggtgat ttcaatactg atatcagaaa atcttgtact      2100
     cttacagaca attttctaaa tgttactgat acctatggat taagttgcat aaatactcta      2160
     cctactcatt ttcattatgg aggaagttca atgattgatc tccttctaac aaatgatcca      2220
     gattttgttc taaaattcaa tcaagtttct gcttcgtgtt tttcgagaca tgacataata      2280
     ttctcaactt taaatctgaa cacatcaaat acatcaaact ttagtttatt tagaaattat      2340
     aacaaaatta attttcaagc cttagatcat gctgtggctt ctataaattg gaatctattg      2400
     tattcaatca ctgattctga gattgctctt gatttcttta atgtaaatat taaacaactt      2460
     tttgaaaatt ttgttccttt atgtaaatat ataccaagaa aaaacccatg gttcaacaat      2520
     gacatactca aagctatgat tgaaagggat ctggcttatg gcttatggaa agcggataga      2580
     agtactttaa ggtttgatga gtttaaaagg cttcggaata gggttactaa cttaatcaat      2640
     attgccaaat caaaatacgt cgctaatcga ttaaacactg cagaatccag taaagttctc      2700
     tggaagaaac ttaaagttat taatgtcaaa agtaaacaac ctcgtgtaga gcaatttttg      2760
     aattcaaaca atgaaataaa ttaccatttt agttctaatt ttacgcaaga taatacgcct      2820
     cctcatacct tgctgccaaa taacaatggc tttaaatttt caacggtaga tataaatgat      2880
     gttatcctag cgcttagttc tatgaagtcc gatgctatcg gtcttgacca aataccactt      2940
     aaatttatta agctaatatt acctttaatt gtagataaaa taacatatat ttttaattta      3000
     gccatttcaa cttcaaaatt tccaagagct tggaagtcag caaaaattat accagttaaa      3060
     aagaaaccaa gaagtctggc cttggacaat ttgcgcccca ttagtatttt acctgctctt      3120
     tcaaaagctt ttgaaaaaat tttgaaagct caaatacaaa cttatctaaa taactttgat      3180
     tatttacata gatttcaatc tggatttaga tctaaacaca gtacaactac agcgttactt      3240
     aaagtgcatg atgatatact aaaagttata gatcgcaaag gagtagcact tttattgttt      3300
     atagattttt ccaaagcgtt tgatcgcatt tctcactcta aattaattaa caaactatca      3360
     ttaaaatata acttttctat agaagctgct aaactaattc agtcttattt aacaggaaga      3420
     tctcaatctg ttttgtctgg cggcacttta tctattccca ttgatataat ttctggagta      3480
     cctcaaggtt caattcttgg tccaatttta ttctcacttt ttataaacga tcttccaacc      3540
     gttctcaaga attgcatgat tcatatattt gctgacgacg ttcaactgta tttagcttca      3600
     aattctckgc ccgtcactga aatggcaagg cttttaaatg atgatttgtg tgaaattctc      3660
     cgctggtcta cccgtaattt gttgccgatc aatccttcta aaaccaaagt catgttcatt      3720
     tctcggaaca gaggagtttc taccctacct gagattattt ttgaacaaaa tgttattgaa      3780
     tatgtaactg aggcgtctaa tcttggaata ataatgcaaa ataatcttga atgggattgt      3840
     catataaatg ggcaatgtag aaaaatctac aacggcctca ggcatctaag aatgacttca      3900
     agtatgttgc caatacaaac aaagctcaaa ctgttcaaat ctctcctact tccgcatttt      3960
     atgtatggtg atgtactttt tcttaatgct gcagctaatt ctattaataa attacgtgtt      4020
     gccttaaacg cgtgtgtacg ttatgtctat aatctatcaa gatatgacag ggtttctcac      4080
     ctccagcata atttacttgg ctgttctttt aataactttt atgagctcag gtcatgtctt      4140
     actctgttta aaataattaa tacttctacc cctagatatc tagttgataa acttttaaat      4200
     tctcgcagta cacgaacaag aaattatata ataccacagc acagatcatc acattacaat      4260
     gaaagctttt ttgttagggg cgttgctaat tggaaccagc ttcctgtctc cattaaaaat      4320
     atacattcac cgattgagtt ccgaaaagaa tgcataaact ggtttggcat gagaaattaa      4380
     caagcgctgt tagtggttaa gttggcaaag ccatataata agaagaagaa ctacacactc      4440
     tcgaactcta attgtagtaa ttgaaaagga gcagtcctta ctctacatgt ataaataaat      4500
     aatgaa                                                                 4506
//
ID   Kiri-9_DTa  repbase;    DNA;    INV; 3582 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.11, Created)
DT   28-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; Kiri-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3582
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (28-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   5'-end truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           604..3384
FT                 /product="Kiri-9_DTa_2p"
FT                 /translation="MSNSNSYALIRVLRNFKQGLTICHLNAQSLCQKMEEF
FT                 RYLFVNSNVDIVCISETWFQSNVKDACYECPGYTLYRSDRMGHAGGVAXYV
FT                 NSKIKCKVIGQHPSDSLIEYISLEITNVRHNPSRILVSCIYRPNKQIDYTN
FT                 MIEVFSRVTLKYNDIILAGDLNSNMLHDFGLRGDLESLGVXIVNSVIPTHY
FT                 TKNNNSLLDVFFVNNVRKVLLYDQISVPXFSKHDLIFLTYDVELDRNEQSY
FT                 TYRDSRNIDYSRLNNNCNLCDWDNIFSLTTVDEQLELFNSNIDFLYNTHVP
FT                 VKVKTVRNSLKSWFNNNIKKAILKRDKAYYKWKRYKTEHFYTQFKSERTTV
FT                 NRLINTAKREYLSMKLTGAIENGKVWKELKNLGIGNIKNVIKEDVNVDDLN
FT                 RKFLNINVPDPDDSTYVTTETVDSMFDCFSFVCVNQCDALEAILQIKSKAT
FT                 GLDEVNPNFVKILLPKIISHLTHLFNTAITTSTFPETWKLAKIMPIPKGNN
FT                 EYRPISILSYCSKIFEKLIAGQINRFLTSNNLLNNNQSGFRKQRSCTTAII
FT                 KIVEEIRRETDESKITFLTLLDFSKAFDTVNHKILILKLKKLFKFSDTSVK
FT                 LMSSYITNRKQAVVIKENTSNFETSYRGVPQGSVLGPLLFSMYINDLSDEL
FT                 SMCNVHMYADDVQLYVSRPLSLVNECINLSNICLFNVDNWATKNGLSLNPK
FT                 KSKCLVIYKKNINTNDFQKLRIGDVELDFVEKANNLGILFNKTLSWNDHVR
FT                 AATGKTYGLLRQLHATQTFLPTSMRLLLAKTLVIPTLFYGVEVFGTCDVAS
FT                 RHKIKVTFNNIARYIYQLGRNDHVTEGAKKIFDLNIDSWIDLKILVLLHKI
FT                 INSRQPDYLYDMIRFTSSQRTNNIISIRTKLASSEKQFLVYAIKIWNSLPH
FT                 SLKTITGTLKFSVKLKQHFNTLT"
XX
SQ   Sequence 3582 BP; 1290 A; 564 C; 633 G; 1092 T; 3 other;
     ctcaaaacaa atcttccgag cgcgaaagtc acagtacaca aatgttgacc cggttgtaat        60
     tgtcaaattg gagtccataa atgacaaaat tgaagttctc cgagcagctg gcgcataccg       120
     aaggcagaca aaacaacaat taagtctaca gctgcttgga tttaactcca gtgccgcagt       180
     ttatgtaaac gagcaactct ccaaagaaag cttcgttatc tttaaagaag caatgagaat       240
     gaagaaggcg aaattgctat ctgctgtgtt cacacgccgt ggttttgtac acgtgagaag       300
     cagtggagat ggaggagaag ttcgctgcat tgtaagcttg gaagagcttt ccgcttttca       360
     cacacccgct cttaattcga cgagctctgc agctcttaat tcatctttat cgtatgctgc       420
     tgctgctggg ggaagtcata gctttcgaga tactcgagat aactaatata atttatttaa       480
     atttaggatc atttttacta ataatatgcc ttaatagtgt gtgtgttaaa tatgtgccgt       540
     taatgttcaa atatgtgcca ataatgtgta tgtgtatagt aaatagtaat cgaacgttta       600
     gatatgtcaa actcaaatag ctatgcatta attagagttc tccgaaattt taagcaaggt       660
     ctaacgatat gccatttaaa cgctcaaagt ctatgtcaga aaatggaaga attcaggtat       720
     ttgtttgtca attcaaatgt cgatattgta tgtatttcag aaacatggtt ccagtcaaat       780
     gtaaaagatg catgttatga atgtcctggg tatactttat accgttcaga ccgtatgggt       840
     catgctggag gggttgcawt ttatgtaaat tccaaaatca aatgtaaagt cataggacaa       900
     catccttctg atagccttat agagtacatt tctctagaaa ttactaatgt tagacataac       960
     ccatcgagaa tattagttag ctgtatttat agaccaaaca aacaaataga ctacacaaat      1020
     atgatagaag tattctcaag ggtaactctt aaatacaatg atataatcct ggcaggagac      1080
     ctaaacagta atatgcttca tgactttggt cttcgtgggg atctggagtc attgggggta      1140
     aamattgtta attctgtgat acccactcac tacactaaga ataataacag tttgctagac      1200
     gtattttttg taaataatgt aagaaaagta ttgctatatg accagatttc tgttccamat      1260
     ttttctaagc acgaccttat atttttgacg tacgatgttg aacttgaccg caatgagcaa      1320
     tcgtacacat atagagactc tagaaatatt gactattcta gactaaacaa taattgtaac      1380
     ctttgtgact gggacaacat ttttagctta acaacagtag acgaacaact ggaactattt      1440
     aactcgaaca ttgacttctt atataatacc catgtacctg ttaaagtaaa aactgtgagg      1500
     aattccttga aatcatggtt caataataat attaaaaaag ctattttaaa gagagataag      1560
     gcttactaca aatggaaacg atataagact gaacatttct acacacaatt taaaagcgaa      1620
     aggactacag tgaacagact tattaatacg gctaaacggg aatacctaag catgaagctt      1680
     actggtgcta tagaaaacgg aaaagtctgg aaagaactaa aaaacctggg aattggcaat      1740
     ataaaaaatg tgataaagga agatgtaaat gtggacgacc ttaacagaaa attcttaaac      1800
     ataaatgtac ctgatcctga cgatagcacg tatgtgacaa cagagactgt agatagtatg      1860
     tttgattgtt tcagttttgt ttgtgtgaat caatgtgatg ctttagaagc tatactacaa      1920
     attaaatcaa aagctacagg acttgatgag gtaaacccga actttgtaaa aatattactt      1980
     ccaaaaatta ttagccactt gacacatttg ttcaatacgg cgataactac atcaaccttt      2040
     ccagagactt ggaaattagc aaaaattatg cctataccca agggcaataa tgaatatagg      2100
     cctatttcaa ttttgtcata ttgttcaaag atattcgaaa aattaattgc cggacaaata      2160
     aatcgattcc tcacttcaaa taatttgtta aataataatc agtcaggttt tcgaaaacag      2220
     agaagctgca cgactgctat tatcaagatt gttgaggaaa tacgaaggga aactgatgaa      2280
     agcaaaataa cttttttaac attgctggac tttagtaagg catttgatac agtgaaccac      2340
     aaaatattaa tactaaagct gaagaaatta tttaaatttt ctgacacatc agtaaaacta      2400
     atgtcatctt atatcacaaa tagaaagcaa gctgttgtta taaaagaaaa tacatcaaat      2460
     tttgaaacat cctatcgtgg tgttcctcag ggatcggtat tagggccatt attgttttca      2520
     atgtatatta atgatctatc tgatgaattg tctatgtgta acgtacatat gtatgcggat      2580
     gatgttcaat tatatgttag tcgaccattg agtttagtta atgaatgtat caatttgtct      2640
     aatatttgtt tgtttaacgt tgataactgg gctacaaaga atggcttgag cttaaatcct      2700
     aagaaatcaa agtgcttggt catctacaag aaaaatataa acacaaatga ttttcaaaag      2760
     cttagaatag gagatgtaga attggacttt gttgagaaag caaataacct gggcatattg      2820
     ttcaacaaaa ccctgtcatg gaatgatcat gtcagagcag ccacaggaaa aacatatgga      2880
     ttgttgcgac aattacatgc gacacaaact tttctgccta cttctatgcg gttattactt      2940
     gctaaaactt tagttatacc gactcttttc tatggagttg aagtttttgg tacctgtgat      3000
     gtagcaagtc gacataaaat aaaagtgaca tttaataata tagccagata catataccaa      3060
     ttgggtagga atgaccatgt tactgaaggc gccaaaaaaa tctttgactt gaatattgac      3120
     agctggattg acctaaaaat attagttctt cttcataaaa ttattaattc caggcaacct      3180
     gattacttgt atgacatgat tcgatttacg tcctcacaaa ggacgaacaa tataataagc      3240
     attagaacaa aacttgcaag ctcggagaaa caatttcttg tatatgccat aaaaatttgg      3300
     aactctttgc cgcattcctt aaaaaccatt actggcacat taaaatttag tgttaaactt      3360
     aaacaacact ttaacacact cacataaaac aaaagtagtt aaataaaata taatagtaaa      3420
     aggcataata aaataataaa ataataactt gtaactgtat ttgtaataga ttttgattaa      3480
     tgtaattaat ttaagattta atgttcatag tgactagtgc agtaaaaata agtttcacgc      3540
     ttgttgtgct aggataggaa aacaataaaa ttaaattaaa aa                         3582
//
ID   Kolobok-1N1_LMi repbase;    DNA;    INV; 1073 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Kolobok-1N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1073
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2910-2910 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1073 BP; 347 A; 157 C; 188 G; 381 T; 0 other;
     ggggagacgg aaggcaactg ggctcaaaaa ttcgattttt agattttagc gtatttgaaa        60
     tgcctggtat ttcctgcgtg aaacagtttt tgttttatat aaatccgaca attttttcgt       120
     gagttatgat ggtttttctg acgctctgtg caatctggcc acgccttccg ttttgcgcca       180
     tgcggagaaa atgcacacag cattctttta ctccttgtat attatttcat gcttctattg       240
     tttttatcgc ttcaatgttt cctaccctgt atctactatc gatacttttt gttccgatcg       300
     tgtttgttat tgttttcgaa cgttaccaaa aactgtattt gttcagatca caaccctcaa       360
     atttggtgtt tatgatgcta ttttatgctt cagtgatggt gtaactagaa aattggatgt       420
     tttggaatta ttgggcatac aatctagtgg aaatactgca aaatccttgg tgcaaataga       480
     taaagagaga atccgcaaag ccgatattgc taatttaaaa tgcacaaaag aagctagaca       540
     gaaaagaaga gggaccaaga gaagaaaaga agatcagtat gattcagatg atgctcaata       600
     tggtgcagga aaatattagt ggtaagtaat tctcatcaat aactgtacta gaattgcaat       660
     attaaacttt aaattgattt ttctcaaaac tacatttttt ttttttttac tttcaggtac       720
     cattatttga taaactaatg gggttagaaa gatgaaattt ggtctttttg tactgaagat       780
     ggtaataaat cattacaagt aaattgagaa ccacaaaaca atcatcaact gttttataat       840
     aattaatgta ctaaaaaagt taaattttac tggtgaaaga ataaaaaaat ttttttcttc       900
     aaaaccatta gagttattat gttcatttta cttgtaaatt gagacatata tgttatatat       960
     atgcagtaaa aatttcgttg ttttatcact tatagttcct ttgaaaagtg tacctattca      1020
     aagggtaaaa tagcattggc agaataggga taaaaattgc cttccgtctc ccc             1073
//
ID   Kolobok-1_AA repbase;    DNA;    INV; 6114 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   16-MAY-2011 (Rel. 16.05, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6114 BP; 2069 A; 1083 C; 1185 G; 1777 T; 0 other;
     gaggaaacac acctccatcc tcctaaacag tcatcatcat caatcaatga cgggtatcaa        60
     aatggtagaa acgcagtaat cgccaagatt gaaagcattt tacgacagga aaatcaaaaa       120
     atatttcatt tcgaattata tcaagcaata attacaacac tattttatca ccacttacct       180
     tttaaagaca gaaatatcat aaaacataag aaaatactgg attttaaaat gaaacaacct       240
     tctcaccatt catcactact actgatgtac cttgctcggc ttgcgaaaac tcccccaagc       300
     aagtcaaact ttggatagct caattcctca ctcgcgcaca aaaaatcatc gtgtggcaca       360
     tttcactgtc aaggtatact ttcacaaaat tcaaaaatag cacggttatc actaattttt       420
     gattaatttt gaaataaact gaactttttt atatgcactc aacgattcta ccagctgtaa       480
     tcaaaacata actgctgcta gaccaacaca ttgctttgtt gtgtaattat atccatgcgt       540
     gctagtatgc gcatagcaat cattgaccag tattgccaaa tctactcttt ataaattcga       600
     tataaaattt attgaatgtt gtattattta agtcaatcgt atgtaaagca ttcattttta       660
     agaaccattt gcagatagat aaagatttcg acgaatattc aatgctaaat cgatttcggt       720
     acaaagtttc tgtaactttc gttttgcaag attatttgaa ccagtatgta tggcagcact       780
     gacaacgaaa acaccatatg ttcgatcata tgttttttat ttacgttttg aagcatcgct       840
     ggttctacat ctcgcatgac ttgttgatag agtgttttcg tgactaaaac cgatcggttg       900
     tacctaaaga tgccgcgtaa aactaaggct caaatagctg ccatcaaacg tgaagcgcag       960
     aaaaagcaag caaactgtag tgctaatgat gattgtaata gtgaggaagt tacagaagaa      1020
     gattatcagc gtgaagactg ggattcagaa gacacgagtg atggatgtgg acatcgtgtt      1080
     gagttgttgc cggcaacaga aagtgaattt gtgagtgatt tctgggagta ctgttcagta      1140
     tgctccaccg tatcagattc cggatcggaa ctcagtgctt atgcatctga tgaagatagt      1200
     gatattgcag aaattaattc tatgcgtaaa ccatgtgagc tgtctcactg tgaagatgta      1260
     tggccatcat ttaatgaaga tacggcatct tttcttcgtg atttatctat cccgagtaca      1320
     gcgtttgacg atagtgtaaa ttggtcgtat gatgatgcgt ttgctccttg ttctccgtct      1380
     gcagaattgc acgatagtag acaagccgac agcctaggag aaaccggctc tgttccaaat      1440
     acaatacctc gtacaccgaa cttgagcaat ggtacaggta agccaataga tatacactgt      1500
     taaaatatgt tataccgaat tgcatgtaac aatgctttat gcaagaaatt gtttcgttta      1560
     aacttaaatg aaatataata ttaaattaca cgttcctatc ccgtgtaacc ccgttgcttt      1620
     gactgctttt aatctgacaa ctgtatatta agccacgcta atgtgtacat ctttcaaatt      1680
     aaaaatggtt ggttcatacg tcatttagat cgtggaacac agtgaagtga aactggacgc      1740
     agagtcaaaa caaaatagtc aatgaggtga cgagtaagct gtacctaatg ttgtggaata      1800
     aaagtcgcta tcatcaatcc ggctgctact atgcaatatg tttggttatg ctgctcaata      1860
     tataaagaag aagcgctttg ttgtttgtta tacagcgcac ttacagtaga aagctatata      1920
     ataacaatac gccactacac agtctttttg atgtaaaaac tgcgtttgac gtttcgcgca      1980
     cttctacagc ctgatgtagt ggtataagca tgattataac atctaataac ataattttga      2040
     aatattacat gactcgtttt cgatgtagaa gaaaacgatg tttttcagca aggaccgcgt      2100
     caagacttgt ggatgcagag atcgtgagtt cgatcccaag tggtggcagg tacttaattg      2160
     tatgtagctt tgggaatatt aaattcagat acttatgaat tgaacttcgg aagctgtgaa      2220
     caacttgaaa atcatattaa atcgataata caggcaagct tataaacgtg cagttgcgaa      2280
     atgattgaaa aagtgccttc cgcagatgct atgcaactac ttgtcctata acggtcgaaa      2340
     caaagcaatt atcagtatac ataagagcta ccaacactgc ttttgaaata gctgagtaga      2400
     ttcgccagat tgatggtaaa aagttcgcat agaagctttt gttcgtatgt acagcgcatt      2460
     tactcagcat aaagctgtgt aaagaatgct tcgagaatgt ttgcaacatt tgcactaaat      2520
     gttagttgag tagcatttaa actttagcta attgttgtgt atctggtgcg caatgtgcag      2580
     gttttcgaac aaaacttcaa tgtataatat tattttattt ttctttcatt caagatacac      2640
     ctgagagtaa gtcacactct cagatagaag ctcaatcgaa tgaaccaaaa acatgtgaaa      2700
     ccgaaaacaa agcatacttc acggaatcaa tacttgaatt aaaacatcga gaactggaaa      2760
     agtacccaat acaactcatt ccgtctgttg tcgagcatag atctggtatt atttatattg      2820
     atgaatgtta tgtattttct ataagattta cgtttctaga acgtgtgttt acacaagcag      2880
     aagcagaaaa catgtctcat tttactgaag attgtatcgc tgataaacgc acagtatgtg      2940
     tatacagtat ttatctgttc aaagattcat aggcgttttt tattcaattt ttaaggtaat      3000
     cccacaagaa agtaacattc aatcaatgca tctagctaaa aaacgtaaga ccgataaagc      3060
     gtttgatgtg aattcatcgt tatcaagctt accaacgaat gacgaaatct tgaaaacaaa      3120
     agtaatggca gttgatactc atcaatactg cgaagaaaag aatgacaatt ggaatgatat      3180
     tgaaggacgt agaattgttg agttcaacta tgttatgaaa tgtattgtgc gagctcaagc      3240
     ccatcattcc aaaatatgta atggagttct ttgccttgat caggagtact atcaatccat      3300
     gatttcaact atgtggttca agtgtgacag ctgtgagaca atgtttaaga taagaaccga      3360
     ggagccctcg cagcgaccga aattgcggaa aagtattgta tggggaacgt tatgttcagg      3420
     aggcacgtat acgcaaacca agcaattact aagcttttgc gatgtaccat ttatgccagt      3480
     gaaaacattt tcgctggatg aaatggaaat ggataccaca ctccaagaag cagtcgatga      3540
     atcaaccgat aaagccatcg aagttgaaaa agctacctat tttgaagaac ataaagtcaa      3600
     cgaccagaat tcgtcacccg atcaaattgc aaaaatcaaa gcttcgttgg atggcagctg      3660
     ggccactcga agctatggag ccagatatag ttctgcatcc ggttgtgggg ttatcgtagg      3720
     agagaaaaca ggaaaaataa tttacgtggg atgtcgcaac aagagatgtt ctgtatgcac      3780
     cagaaattcc aggctaggta acgtcaaagg tccccataag tgttatcgca attatgtcgg      3840
     ctcatctggg ggcatggagc cggatataat gattaaagga tttgaagaat tggaaagaaa      3900
     aggagtatgg ataaccacac ttataaccga tggagactct acaactgtag cgcggatcaa      3960
     aaactctatt aaatacggtc catctataga acatcaatta tgctgcaacc atatttgtaa      4020
     aaatatggga aagaaactac gggatgtaag ttttgtttaa tatcatttca tataaaagaa      4080
     aaattacaat ttttctatta gatcaaatgc cccaaagatg tagctgcttt ggtgtctgca      4140
     aacatagcac gcattacgcg tggagttcga gctgctatag ttcattgcgc agaagcaact      4200
     ggaggttctg acgtagaagg gctccggcat gatataagaa atgtaccagc acatgtcttc      4260
     aatgatcatc gaaaatgtcg tgattatttc tgttcgcagt tgacaaatga aaatgaatgg      4320
     cacatcgact tgctccaaaa atatggagtg ttgtccaaaa ttcaaggggt ggtagaaacg      4380
     gttgcggcta aggcagagtt tctgaatcac aacaagacga gtaacacgtg agcaaacgta      4440
     ttattcattg caaactgatt ttgactattg ttttattaca gctctgagaa cgtcttctgc      4500
     cgtttgtgta aatacaatgc tgggaaaaga ttgaacttca ctagtcgtgg ttcttatcaa      4560
     cggagagtta taataacaac tctacaacat aacgaaggat acacgtggca ctcaacatcg      4620
     atgaaaaagt ttattggatc tgaccctcca aagcttattt tcaaatttgc cgaagagcaa      4680
     gaacgtctga aagcagccac attggtatcg aaaaagcgac ctgattttaa caggaagcct      4740
     atcaacatca gcgagattga gcgagactat ggcgaaaccg ctgtcgctgt ggcttctcgt      4800
     gaaattgacg ttgaagaaga aattccagca gctaaacaaa aatatatagc acgtatttct      4860
     ggtttatatt ttacccaagt ttaacttttt ctaacttttt aaataaggca gcgtccattt      4920
     ataacgtaac gctaaaattt gaaattttgg accccctccc ccccttcgta acgctttttg      4980
     tatgaaaaat ttcaattttt agtatgaacc gtaacgcttg agcctactcc ccccctcccc      5040
     ctagagcgtt acgtaatttg tggatgccgc ctaatattta ttgatattga ttgatatata      5100
     tcctacattt tagatgaccg cgcaatctaa cgaaaagctt cggaacaatg tgagtttgcc      5160
     agaaatggaa gaatatgcga aaggcagaat tttaccgaaa tttgttgctg aggtagttgg      5220
     atcgacgaaa aaaacattgc aacaaaaatg tgacaatata ttgttaacaa ccaatacatg      5280
     gaatttcatc aaacaaaaca gatctattat cggtccaatc actgaagcta tcaatggaaa      5340
     attcgggtac aaaatcagtg gcagtaaaat gttcgttgat aactgccata attatatttg      5400
     ctgtattcca gacggtattc aacaacaatt tgatattgga tatattgtat accaaatgaa      5460
     agatctattt ttcaggagtt tcggatgatg gagaaacaat aatgattgtg aagaaaaagg      5520
     cgatcaaggg acctctaaaa gaaaacgctg ctaaactagg atgcaaatta atcgaaaatg      5580
     acatcaaact tgatcgtaaa acatattgtg aagtacaagt ttcgctgcac gtgtgtgagg      5640
     cagcgaaagc tgtagtgtgc ttcgtcaata gcaacaatat tgatgattac ttggtgaagg      5700
     agtgcgccct ggatgcaaca tttttcgaag aaaaggtgga agagcatatt aaagatttct      5760
     tcgaaaacat tctcatccaa aaaatcattg aaaatgaagt atttgttaaa agttgaattt      5820
     ttaaagcgta ttttttggaa gattgcaaat gcaaataacg gtaccccccc cacttccatt      5880
     aataaatgaa atagaataaa acagatatga attgttttat atttaatttt actaaaaagt      5940
     tgattacaat acttcccacc attggcataa tcgtgaggca agtgtatttg tggttttgca      6000
     taatatgttt acataagatc gtaccaccac gaaggcataa aataaagata aaactaacac      6060
     tataataatg cttcacaaac acatggaagt catagaatga cggaaatttg aacc            6114
//
ID   Kolobok-1_AP repbase;    DNA;    INV; 4370 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.08, Created)
DT   27-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Autonomous Kolobok transoson - conceptual consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4370
RA   Kapitonov V.V. and Jurka J.;
RT   "Canonical Kolobok transposons from metazoans.";
RL   Repbase Reports 14(8), 2094-2094 (2014).
XX
DR   [1] (Consensus)
XX
CC   This family is a member of the canonical Kol0 group of Kolobok
CC   transposons. The consensus codes for the Kolobok TPase and KolX
CC   proteins. Unusually, both proteins are encoded by the genes in
CC   the same orientation.
XX
FH   Key           Location/Qualifiers
FT   CDS           1741..3858
FT                 /product="Kolobok-1_AP_2p"
FT                 /note="TPase."
FT                 /translation="MVLCSVFGCNSNNDKKRATCSQSENINFYSFPKRNKS
FT                 PLRFKQWLVLCKRKDFVPGSGSRICSKHFQEKDFTESSKLQKQLLPNEKIK
FT                 LYLNSDSIPTIYKVDDLRPKTPRSIRISRKRNEEDIISKQNSTNTSVKKLK
FT                 VDNFVNNFNESDSENDNVLDIDNPNCIYFSDNPNDKGIQCDLGNECYELYK
FT                 PTNDISFEIEDQEEEEEEEEEEEYEEEEMYECKQTKQKPSSNIEDDSCFFV
FT                 FWDCLLPLFNRCRQCNSTVVSVQHYIQGALLSIITICDRNHKLIWRSQNKS
FT                 NKRPLGNILIGSALTLSGILYTQMVAFCDSLKLSFFSRPVYDKIIKRYTGP
FT                 VICNIWEDQKKSTINSIKNSENDIWLAGDGQYDSPGFCAKYCIYSVMDLRS
FT                 GKIVDFKLVQKGMVKGDLERKGCELLLNDLTKNQNFNIKLFLTDRHKGIRF
FT                 YIRTQHPEIQHEFDVWHLSKSLMKKMKTLEKKHENAYLWKSSVNNHLWWAS
FT                 QNCKGDGQLLVEKFTSLLHHIKNEHEWEENGVTKTCDHDPLTDEEINKKLW
FT                 LKSDDESYYALKKIITAKDFIKDLPHAKHFVHTGRLESYHNVRLKYMPKRI
FT                 HLKYRGMYIRSIMAILDHNYNTNKQVVGDKMVYSKPLGKYTIKNVYERTDN
FT                 DWRKQIMEEVLDLAKKKTNEYNIITIPEEIEIPKSIAPIPRPNIEEIRSKR
FT                 YSRFTI"
FT   CDS           join(655..939,1030..1186,1297..1394)
FT                 /product="Kolobok-1_AP_1p"
FT                 /note="Kolx."
FT                 /translation="MSIRPYSFEPTVNDIDMADIQPGRNEPDIPEQLEGRS
FT                 KINVKDWCLCNKCIRFTTDQECICCFELEKLHKLLPQSNKKTCITEISSFS
FT                 KIILDEEVLNITRQQIIVKSKNKSKKKTLCSSQPTNKMWRYICYKQFTHWI
FT                 NSWNSIGKGNRIVIPSCVVNKIRQKYPEQDGCYVGYKSCTL"
XX
SQ   Sequence 4370 BP; 1692 A; 567 C; 656 G; 1455 T; 0 other;
     aggaccatga aacaaaaaaa tgatttttgc ttaattaata gttagttaat tattataact        60
     aacggtggta ctaaaatttg tatacgtcga tttgttaacg cgctagagcc aaagagagat       120
     agccgcgtga cgtcacaaga tcacacggcg cggcggcggc gtatactttt atacaggaat       180
     caccgacgcg gtctagatta tttatttata atttttgtta taatattcaa ttatattata       240
     aataacttcg tagacacaac aatgaacaga cctatacaat taatactcta tttggttagt       300
     tatgttttta tctaaaataa gacttattct atgttgacga acgtcgatca accgcatttt       360
     ccgtttacac gtcttcgtaa acggacgtat ttttcaacta aacattttca tcgttggaat       420
     tttgttttac gaggtaaagt aatgtattat aaattataat aatttttatt ttatttatta       480
     ataataataa tttgttaatt acatattata tattttatat aaagtggaaa cagttataag       540
     tacctatatt atgttatatt atattataat ttataagaag tgttctcgca taagcaaaat       600
     atgttttata acaatttgta tttgtttttg acagtgtatt gcaaatattt aaatatgtca       660
     atacgtccat atagttttga gcccactgtg aacgatattg atatggctga tattcagccg       720
     ggtagaaatg aaccagatat accagaacaa ttagagggtc gttcaaaaat taatgtgaag       780
     gattggtgtt tatgtaataa atgtattagg tttactactg accaagagtg tatttgttgc       840
     tttgagttag aaaaattaca taaattacta ccacagagta acaaaaaaac atgtataacg       900
     gagataagct cattttcaaa aattatttta gatgaagaag taagtcatag attaggtacc       960
     tacataatac aaacacagtg aattcagttt tttaattttg tcctcgatat tatttattac      1020
     gtttattagg ttctcaatat tacacgacaa caaatcattg ttaaatcaaa aaataaaagc      1080
     aaaaaaaaaa cgttatgttc atcacaacca acaaataaga tgtggaggta tatttgttat      1140
     aaacaattta ctcattggat aaactcgtgg aattctatag gaaaaggtag gatgactaca      1200
     agtccattga taatataatg caatatgtta actaatgctt ttaaatatgt ataggaacgt      1260
     ataaatacaa gtaattaaat ttttggtttt atataggtaa tcgtattgtt attccgtcgt      1320
     gtgttgtaaa taaaattcgg cagaaatatc cggaacaaga cggttgttat gttggttata      1380
     aatcatgtac actgtaaaca taatatatta gttatataat atattatatt ataagcatat      1440
     tattaccatg cataattatg taataaacta ttattaatat ataaaatata aatatttcaa      1500
     tatttgtaat attaatgaga acacttctta taattacatt ttaagcatac aatattcaca      1560
     tatttatttt aatatgtatg tacctatttt ataatattat cttaatgtcc ttgtcctata      1620
     agttataacc atatcaatta atataataat atattttatg ttttgatatt aaagtattta      1680
     cattaaaatt aaaaattatt cacattaaaa taaaatggtg taatttattt taggggtaaa      1740
     atggttcttt gttctgtatt tggttgcaat tcaaataatg ataagaaaag ggcaacttgc      1800
     agccaatctg aaaatataaa tttttatagt tttccaaaaa gaaataaatc accacttaga      1860
     tttaaacaat ggttagtgtt atgtaaacgt aaagattttg tcccgggtag tggatctaga      1920
     atatgttcaa aacattttca agaaaaagat tttacagaat cgagtaaact acaaaaacag      1980
     ctactgccaa atgaaaaaat aaagttatat ttaaattccg attctattcc aactatttac      2040
     aaagtcgatg atcttagacc caaaacacct cgaagtataa gaatatcccg aaaaagaaac      2100
     gaagaagata ttatatcaaa acaaaattca actaacacat ctgtaaaaaa attaaaagtt      2160
     gacaatttcg taaacaattt taatgaatct gattccgaaa acgataatgt actagatatt      2220
     gataatccaa attgtattta cttcagtgat aatccgaatg ataaaggcat acagtgtgat      2280
     ttaggcaatg agtgctacga attgtataag cctacaaatg acatatcttt tgaaatagaa      2340
     gaccaagaag aagaagaaga agaagaagaa gaagaagagt atgaagaaga agaaatgtat      2400
     gaatgtaaac agacaaagca aaaaccatca tcaaatatag aagatgattc ttgttttttt      2460
     gtattttggg attgtttact gccacttttt aatcgttgcc gtcaatgtaa ttctacagtt      2520
     gtatccgtcc aacattatat ccaaggggca ttactttcta ttataactat atgtgataga      2580
     aaccataaat taatttggcg ttcacaaaat aagagtaata aacgtccatt aggaaatata      2640
     ttgattggat ctgctttgac tttatctgga attctgtaca cacaaatggt agctttctgt      2700
     gattcattaa aactatcgtt tttttctcgt ccagtttatg ataaaataat taagcgttat      2760
     actggaccag tcatttgtaa tatttgggaa gatcaaaaga aaagtacaat taacagtatt      2820
     aaaaattcag aaaatgatat ttggttagcc ggagatgggc agtatgactc tccaggcttt      2880
     tgcgccaagt attgcattta ttcggtaatg gatttacgta gtggaaaaat agtggacttt      2940
     aaacttgtac aaaaaggtat ggtaaaagga gacttagaaa gaaaaggttg tgaattatta      3000
     cttaatgatt tgactaaaaa ccaaaatttt aatattaaat tgtttcttac tgatcgacat      3060
     aaaggaattc gtttttacat tagaacacaa catcctgaaa tacaacatga atttgatgtg      3120
     tggcacctat ctaaaagttt gatgaaaaaa atgaaaactt tagaaaaaaa acatgaaaat      3180
     gcatatttat ggaaaagtag tgttaataat catctttggt gggcttcgca aaactgcaaa      3240
     ggtgacggtc aattattagt tgaaaaattc acgtctctac tacatcacat aaaaaatgaa      3300
     catgaatggg aagaaaatgg agtaacaaaa acatgcgatc atgatccatt aacagacgaa      3360
     gaaataaata aaaaattatg gttaaaatcc gatgacgaat catactatgc attaaaaaaa      3420
     attataactg ccaaagattt tataaaagat ttgccacatg caaaacattt tgtgcatact      3480
     ggccgcttgg aatcttatca taatgtaagg ctaaaatata tgccaaaacg aattcatctg      3540
     aaatatagag gtatgtacat aagatccatc atggctatat tggaccataa ttacaataca      3600
     aataaacaag tagtaggtga taaaatggta tactcgaaac cgttagggaa atacacaata      3660
     aaaaatgtat atgagcgtac tgataatgat tggcgaaaac aaattatgga agaagtactc      3720
     gatttggcaa aaaaaaaaac aaacgaatat aatatcataa caataccaga agaaattgaa      3780
     attcctaagt ccatagctcc aataccaaga ccaaatattg aagaaatacg gtctaaaaga      3840
     tattcgagat ttacaattta attttataat attctcttaa aagtgtttat attgttattt      3900
     ttagttttta aaacaataaa tatattatat tcatctgata atctaggtat ataaaagtat      3960
     atatttatgt gaaatatcga aataatatta catcaatgtc aattctaaat tctaatacca      4020
     tagttaatag aggtaatata aattaattac gtacatttaa atttagtaaa acgacaaaac      4080
     gttcactaac atttattaaa acccactgac ttatgataat tgtcttaatt tttatttttt      4140
     gttgaatata acaaaaatta taaataaata atctagaccg cgtcggtgat tcctgtataa      4200
     aagtatacgc cgccgccgcg ccgtgtgatc ttgtgacgtc acgcggctat ctctctttgg      4260
     ctctagcgcg ttaacaaatc gacgtataca aattttagta ccaccgttag ttatagtaat      4320
     taactaacta ttaattaagc caaaatcatt tttttttgtt tcatggtcct                 4370
//
ID   Kolobok-1_DBp repbase;    DNA;    INV; 2765 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 17.05, Created)
DT   20-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   Kolobok-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2765
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 583-583 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus (2 copies).
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..2152
FT                 /product="Kolobok-1_DBp_1p"
FT                 /translation="MSSTHKVSRELRKDFRIYKSFSKKRKQYFNPKTVERK
FT                 SFSASRKKLKFKDDVHVPVDQSVQYLFINFLQVFTGISQFVKCKTCDGAVQ
FT                 FNPIEMRGLGYKIAVTCDDCEQRKINASAVIDGAYEINRRFIMTMRLLGLG
FT                 LAGCAKFCGFMDMPPFLKQKSFDSIMKNILTTVKEVFLRFTKLAAREEIGQ
FT                 NMGQIANHLTVSGDGTWKKRGFSSLYGVASLVGHYSGKILDIVVKCAFCKM
FT                 CQMWDGKKDTIEYEDWMESHESQCTSNHTGSAGKMEVDAILEMFQRSENLH
FT                 DVXYANYVGDGDSKTFSMIRNAAIYDDLLVQKKECIGHVQKRMGTRLRNAK
FT                 KGNKGLGGKGKLTGNVIDKLAVYYGLAILNNSDSVEGMKNAIWATYYHYSS
FT                 TDRHPQHEKCPSGNESWCEWQKAFAALPKENLKKKNFIPKFVHSYKPLPDD
FT                 VLQVIKPIYEDLSKDELLERCLGGFNQNNNESYNQLIWKMSPKHQPGGAVP
FT                 VAIAAYTSACIFNEGQASVLKIFEAMGVPCGRNAHDYAAQQDENRIVAAEV
FT                 RAQAATREARIASRRRQMGSLEDEDGTDDSLYGPGIDDDL"
XX
SQ   Sequence 2765 BP; 873 A; 515 C; 612 G; 764 T; 1 other;
     ggggttatat acctttttta ttttcaaaaa atcgaaaatt tttttattgc tttatcttaa        60
     agaacaattc cttgagaaca ttttcccaaa ttttcataga gattggagca gtagaaaaaa       120
     agttacagcg tttctaaccg cgcgcctcgt cgcggcctgt cagcggccag cggcccgtca       180
     gcggccagcg gccagcggca ggtgcgctat gttcatagtt catggcaaca tttgttttag       240
     ggctcgtgat caatagtgcc aattgctggg ggccaatgcg agtgtgtgta tatgtgtgtg       300
     tgttattatt atgggtcaaa ataaccaaaa ctcacactga catattcgcc tctacttaca       360
     tatccttgca tctttttttc gaaaatgtaa tatgagttcg acacacaaag tttcgcgcga       420
     gttacggaaa gattttagga tatacaagtc gttctcgaaa aagagaaagc agtatttcaa       480
     tccaaaaact gttgaaagga aaagtttcag tgcgtcgcgt aagaaactga aattcaagga       540
     cgatgttcat gtgcccgttg atcaatcggt gcaatactta tttatcaatt ttttgcaagt       600
     gtttacggga atatcgcagt tcgtgaaatg caaaacttgt gacggagccg tacaattcaa       660
     tcctatcgag atgcgaggac tgggatataa aatagccgtg acttgtgatg attgtgagca       720
     gcgtaaaata aacgcaagtg ctgttattga tggtgcatat gaaattaacc gacgtttcat       780
     aatgacaatg cgattgcttg gtttagggtt agcgggttgt gccaagtttt gtggattcat       840
     ggacatgcca ccgtttttga aacagaaatc gttcgattcc atcatgaaaa acattttgac       900
     caccgtgaaa gaagtgtttc ttcggttcac taaattggct gcgcgcgaag aaattggaca       960
     aaatatggga caaatcgcaa atcacttgac tgtatctggc gatggtactt ggaaaaaacg      1020
     tggatttagt tccttatacg gggtcgcttc tttggtgggt cattactccg gtaaaatttt      1080
     ggatattgtc gtgaaatgtg ctttctgtaa aatgtgccag atgtgggatg gaaaaaagga      1140
     tacgattgaa tatgaagatt ggatggaatc acatgaatcg cagtgtactt ctaatcatac      1200
     aggatcagcg ggcaaaatgg aagtggacgc cattctggag atgtttcaac gctccgaaaa      1260
     tttgcatgat gtgangtatg caaattacgt aggagacggc gactccaaaa ccttttcaat      1320
     gatcaggaat gcagcaattt acgatgatct tcttgtgcaa aaaaaggaat gcattgggca      1380
     tgtgcagaaa cgaatgggaa cacgcctgag aaatgctaaa aagggtaaca aaggtcttgg      1440
     cggaaagggg aagttgactg gaaatgtgat cgataagtta gcagtgtact atggattagc      1500
     gattctcaat aattcggatt cggtggaggg catgaaaaat gctatttggg caacgtacta      1560
     ccactacagc tcaacggaca gacatcccca acatgagaaa tgtccctctg gtaacgagtc      1620
     ttggtgcgag tggcagaaag cttttgccgc gctacccaag gagaatctga aaaagaaaaa      1680
     cttcatccct aaattcgtcc actcctacaa acctttgccc gatgatgttt tacaagttat      1740
     aaagccgata tacgaggatt tatcgaaaga cgaactgctg gaaagatgcc ttggtggatt      1800
     caatcagaac aacaacgaaa gctacaacca gctaatttgg aaaatgagcc caaaacatca      1860
     gccaggaggt gctgtgccag tggcaattgc agcttacaca tcagcctgca ttttcaacga      1920
     ggggcaagca tctgtcttga agatcttcga agcgatggga gtgccctgtg gcagaaatgc      1980
     gcacgattac gccgcacaac aggacgagaa tcgcattgtg gcggccgagg tgcgggcgca      2040
     agcagctaca agggaggctc ggatagccag ccgacgcaga caaatgggtt ctttggagga      2100
     tgaagatggc acagatgatt cactatatgg tcccggaatc gacgatgact tgtaagttca      2160
     cttgactaac tgttattttc gcaaaaactg aacttgaaac tttaaacgcg aatatctcga      2220
     aatggtgttt cttgaaaaat gactttgcgg tgacaacgat tgacggaaaa ctactgaacc      2280
     gatttacttc aaattttttt taaaatgttc gtaatgaaat tctcttgtgc ttgaacgatc      2340
     gacttttcac gcgcaaactt ttatttcggc gaaataaatt ttttagtgaa atttctagag      2400
     accaaaacgt tcatttttag cataaaacgc tgccatatcc aaacaaaaac aaaaaatttt      2460
     aaaatcgatc gttcaagcac aagagattac tctaaactaa tgaaattttt ttacttttat      2520
     gatttcagtt gacctgtttg acctggagaa ctgtcaccgc aaggctctaa aaaaaaaagg      2580
     cctctaagga aaacagccac cccttaaaaa gtattcaata ttttttcacc aaattttgta      2640
     aaaacattct taataaagtg tactattaaa atattaaaac atccgtgtaa ttaaataatt      2700
     gctacatacc taaaaaaaaa ttcaaacttt cctctttttc ttcgaaaaag aaggtatata      2760
     acccc                                                                  2765
//
ID   Kolobok-1_DSuz repbase;    DNA;    INV; 2589 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   17-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2589
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 143-143 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. TTAA TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           255..1970
FT                 /product="Kolobok-1_DSuz_1p"
FT                 /translation="MDRKNKRHCAGKQTNRSDRKKRRVGPENRFVAEKVTV
FT                 NTSTSEQELNTSFDDSEVSIDPSVSYRVINFXSIFPKLGQVVNCKKCGGDV
FT                 EFSETASRGLGFNLIMKCNTCVPTKIPSCPCIKNAFEVNRRLVFAMRMLGV
FT                 SQTGAEKFCAFMDLPRPLFPKTYSELTEIVRNASEKVKYMSIKSAGDEEKQ
FT                 LTLENNADFVGLTVSGDGSWRKRGFSSLHGVVSLIGYRSKKVLDFTVKSSH
FT                 CHACSLWKNKKGTAEYDSWYEEHEESCDANHVGPSGNMEPHAMVEMFQRSE
FT                 QLHQVKYDCYVGDGDSKTYNEVVENVPYDVTKKECVNHVSKRMGTRLRNCK
FT                 KTTKGLGGRGKLTDKIIKDLTLYYGLAIRRNMDSLENMKKAIWATFLHKSS
FT                 TDSHPKHENCPEGPESWCQWQKARALGKLKGFEHKPALPQDVLDAIKPIYT
FT                 DLSRDDLLKRCLGAFNQNNNESFNNVIWKFAPKTTFNGVTTVHIAANIATI
FT                 IFNNGHTALLRVLEFMGVCIGMNLYDYCQKIDKERINYANRHTLANTREGR
FT                 LHAQELRQKQMMDAEELLYGPGIAE"
XX
SQ   Sequence 2589 BP; 833 A; 475 C; 530 G; 749 T; 2 other;
     ggggccccaa cactgtaaca ttttcaaaaa atcgattttt ttttttttgc taaatcaata        60
     gcttagacat ctaagaacat gtatgtaaag tttcaaacma aaattcgaac tctaagtact       120
     tgaacagagc gccagacgct gacgtgccgg ctgagcatat ttacatattt ggtaaacacg       180
     tgctcttgtt ttgttgtcga aatttttcat tgtcgtgttt tttaaagtta aattcttgtg       240
     tttatttttg aataatggat agaaaaaata aaagacactg tgctggtaag cagacaaaca       300
     gaagtgatag aaaaaaacga agagttggtc cagaaaatag atttgttgca gagaaagtga       360
     cagtgaatac tagtacatct gagcaggagc tcaatacttc ttttgatgat tctgaagtgt       420
     cgatcgatcc aagtgtttct tatagagtca tcaattttkt atctattttt ccaaagctag       480
     ggcaagtagt caactgtaaa aaatgtggag gagacgtgga gttctctgaa actgcgagca       540
     gaggattggg tttcaattta ataatgaagt gtaacacatg tgttccaacg aaaattcctt       600
     cttgcccttg cataaaaaac gctttcgaag tcaatcgcag acttgttttt gccatgagga       660
     tgcttggagt ctctcaaacc ggagccgaaa aattttgcgc cttcatggac cttcctcggc       720
     ccctctttcc gaaaacgtat tctgaattga ccgaaatcgt tagaaacgct tcagaaaagg       780
     taaaatatat gtcaatcaag agtgcaggtg atgaagaaaa acagctaacg ttggagaaca       840
     atgcagattt cgtcggattg accgtctcag gcgatggcag ttggcggaaa cgtggtttca       900
     gttctttaca tggcgtggtt tccctaatcg gatatcgtag taagaaagtg cttgatttta       960
     cggttaaatc ctcacattgc catgcatgct ctttgtggaa aaataaaaaa ggtacagctg      1020
     agtacgattc atggtacgaa gagcacgagg aatcgtgcga tgcgaatcac gttggtccct      1080
     ctggaaatat ggagccgcac gctatggttg agatgtttca aaggtcggaa caattgcatc      1140
     aagtaaagta tgattgttac gtcggcgacg gcgattccaa gacatataat gaagtcgtcg      1200
     agaatgttcc ttatgatgtg acgaaaaaag aatgcgtcaa tcatgtatcc aaacgcatgg      1260
     gtactcgatt gcgcaattgc aaaaaaacca ctaaaggtct tggaggcagg ggtaagctta      1320
     ctgataagat tattaaggat cttacccttt attacgggtt agctataagg cgcaacatgg      1380
     attctttaga gaatatgaaa aaagccatat gggcaacctt tttacataaa tcttccaccg      1440
     attcacatcc aaagcacgaa aattgcccgg aaggtccgga atcttggtgc caatggcaaa      1500
     aggctcgcgc gctcggaaaa ctgaaaggtt ttgaacacaa acctgcatta ccccaagacg      1560
     ttctggatgc tataaagccg atatatactg atctcagtcg tgacgatctc ttaaaacgat      1620
     gcttgggtgc tttcaatcag aataacaacg aaagtttcaa caacgttatc tggaaattcg      1680
     cgccgaaaac aacgttcaat ggagtaacaa ctgtacatat tgcagcaaac atagctacta      1740
     ttatatttaa taatggtcac acagcacttc tacgtgtgtt agaattcatg ggagtctgta      1800
     tcggaatgaa tctttacgat tactgtcaaa agattgacaa agaacgcatc aattacgcca      1860
     atcgtcatac cctggcaaac acgcgtgaag gacgtttgca tgcccaggaa ttgcgccaaa      1920
     aacaaatgat ggatgcggaa gagctgctct acggtccagg gattgccgag taacaaaata      1980
     aaccacgtaa gaccttttaa actacctttt tcaattcgat ttgacccttt caaaacttta      2040
     aacgcgatta tctcgaaacc atgttttttg acctggttga cagcataact gaaaaaattc      2100
     ttatccgatc gacctgatcc aaatggcatt ctattcggga aaagtgtcgt ttcagttgga      2160
     cgtagccgtt ttttgatata tgtaaatttt ttttttttat aaacaattaa gtgcaaaatt      2220
     ttacgcgaaa aaaaaatttt ttttttcaaa cagccgccat tttttttcta atcaatattt      2280
     ttaaaatccc atatgtcgaa cgatagccag taatgtatat ttcaagaatc tgtttggttt      2340
     tttgatctag gtggcgccgt tttgctgatt tgctgtcaac caggcaaggg aagtttcaaa      2400
     aagacgccat tttggatcag ctacagaaga aaaacatggc cgccaaaaaa aaaaaaaaaa      2460
     tttttttccg ataattcaaa cattgattaa catatttgta aagtttaaag ttaatcggaa      2520
     cgtccgtttt tctgtaataa ataaaataaa aaccatgtca aaaatcgcag tttacagtgt      2580
     tggggcccc                                                              2589
//
ID   Kolobok-1_DTa repbase;    DNA;    INV; 2588 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2588
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(386..856,819..1766,1717..1962)
FT                 /product="Kolobok-1_DTa_1p"
FT                 /translation="SASARKLFKVNTAKISYNPLHSYRLIEFFTVFTALSE
FT                 YIICRQCKETVKFEVTNFRGLGFKLVILCRCGHNLINSGPFINNGFEINRR
FT                 IVLVMRLLGIAREGISLFCNLMDICNGLSESAYNNIIKHLYNVTESLFQSY
FT                 CNKAVEEKKTECNSQKASRKKKQNAILKRPVDNLKVSGDGSWGKRGFRSLY
FT                 GVTTLIGYYTGKVIALVVKSSFCSGCNYWNNKKNTVEYEKWYSQHIEICLA
FT                 NHQGSAAAMKVESIKEMFKKSEELFGVKYGNYIGVGDSKRFKGILDVNPYG
FT                 DDFPVVKSECIGHVQKKMGSRLRKVKKDYRLGGKGKLTEALINKRTLYYGL
FT                 AIRRNVDSLDEMKKAVMATYYHICSTDEIPRHKNCFRGPDSWCKWQKCKAN
FT                 GKNFIHPAPLHIRVKKYVIPIFKALSRDDLLERCLGGHTQNANESFNSTIW
FT                 RLAPKHLNSGLKIVEIAAFIAAGLFNEGKLWKSLLLLQQDYSMKDNMQITI
FT                 GQQSKLYTEKIDQERVRRENHRSLLATKEARQARQEEFLKRNEFYEVTEGD
FT                 LYGSGIAD"
XX
SQ   Sequence 2588 BP; 934 A; 413 C; 504 G; 737 T; 0 other;
     gggggtagat acatatagaa aaaaaaaatc tattattttt ttattttata aatcgataga        60
     ttaactcttt aagaatatgc catgaaagtt tcaccaagaa attccgagta ctttggaaga       120
     tattccattc caaaggaacc agcctcctgt ttcaaaaagt accgacgaaa agttgcttac       180
     ttgccagtgc tcccaatgct tatcgctctg atgaatctcg acagcaaaaa aaatgagatc       240
     gttgaacgcc agccgaaaaa caaaaagaag tgtaacggct cgtccttttc accgttgtcg       300
     acgcaaattt aacggtaata agtacttcac gaaggaagaa agacaaaatg gaacgaaaaa       360
     ttcaaatgag agacaaggac aataaagtgc cagtgcaaga aaacttttta aagtcaatac       420
     cgcgaagatt tcttataatc cattgcattc atacaggtta attgaatttt tcacagtgtt       480
     tactgcatta tcagaatata taatatgccg tcagtgtaaa gaaacagtaa aatttgaagt       540
     gactaatttt cgaggcttgg gtttcaagct agttatatta tgccgatgtg gccacaactt       600
     gatcaactct ggaccattta tcaataacgg attcgaaatc aatcggagaa ttgtcctagt       660
     tatgcgcctt ttaggaattg caagagaagg gataagttta ttttgcaatc ttatggacat       720
     ttgcaacggc ctcagtgaaa gtgcgtataa caatattatt aaacatttgt ataatgtcac       780
     agaatcttta tttcaatcat attgtaataa agctgtagag gaaaaaaaaa cagaatgcaa       840
     ttctcaaaag gccagttgac aatttgaaag tatctggcga tggatcttgg gggaaacgag       900
     gctttagatc attatatggt gtgacaacac ttattggata ctacactggt aaagttattg       960
     ctttagtcgt aaaaagtagc ttctgttcgg gctgtaatta ctggaataat aaaaaaaata      1020
     ctgtggaata tgagaaatgg tacagccaac acatagaaat atgtcttgcg aatcaccaag      1080
     gatctgcggc tgcaatgaaa gtcgaatcaa tcaaagaaat gtttaaaaaa tctgaggaat      1140
     tatttggagt aaagtatggt aattatatcg gcgttggcga ttcaaaaaga ttcaaaggaa      1200
     ttctggatgt aaatccttac ggcgatgact ttccggtggt gaagagtgaa tgcattggcc      1260
     atgtccagaa gaagatggga agtcgactcc gaaaagttaa aaaagattat agattgggag      1320
     gaaaaggcaa gctaaccgaa gccctaataa acaaacgtac attatattac ggtctagcta      1380
     ttcgaagaaa tgtcgatagt cttgatgaga tgaagaaggc cgtaatggca acatattacc      1440
     atatttgctc aactgatgaa attcctagac acaagaattg ttttcgaggc ccggatagtt      1500
     ggtgcaaatg gcaaaaatgt aaagctaatg gaaaaaactt tattcaccct gcaccattac      1560
     atatcagagt taaaaaatac gtaataccaa tatttaaggc tttatctcga gacgatttgt      1620
     tggaaagatg tttaggtggt cacacacaga atgcgaatga gagctttaat tcaaccattt      1680
     ggcgtttagc tccaaagcac ttaaattctg ggctgaaaat tgtggaaatc gctgctttta      1740
     ttgcagcagg attattcaat gaaggataat atgcaaataa caattgggca gcaaagtaaa      1800
     ctttataccg aaaaaattga ccaagaaaga gtaaggcgag aaaaccatcg cagcttatta      1860
     gcaaccaaag aagctcgcca ggctcgacag gaagagtttt tgaagagaaa tgaattttat      1920
     gaggttactg aaggagatct atatgggtcc ggcattgccg attaactaat aagttactta      1980
     atcgataaaa gttcacgttt ctaaacttta aacgcgtttt tctcgaaacc acgatttcgc      2040
     cagctgcgga tcgtgtatct caaaaagtaa tggtttgatc attatgctgc ttttacaaaa      2100
     atgtttgtaa tgaaatgttg taatgaaatg tttgtaatga aattgccgac tgtctgaacc      2160
     tacttaatgt agacattttc aagtttaaat atttttttat aggcaaaaac aaaaaaaaaa      2220
     ataagcaaga aaatgatttt tgactttgaa tgggtgccaa ttccagagtt tttgagatat      2280
     tctatgtaag ttaggttcag acagtttcta cattaattcc taacaaaata aatttagttt      2340
     cataaaaatc ggatctacac agcgacctgt ggacgacccg cagctggcct actttttttt      2400
     aatatagcct ggcaaataat tcccatgggc gccattttga aagataaaaa aaaaataaaa      2460
     actggtaaaa attatataag aacagtgtaa tcaacatgcc aagttacgag atcccagcac      2520
     aattccttat tagttaaaaa aatgacgaaa aacatgaaaa atttgcagtt ctatatgtat      2580
     cttccccc                                                               2588
//
ID   Kolobok-1_LMi repbase;    DNA;    INV; 2566 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2566
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2991-2991 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           407..2116
FT                 /product="Kolobok-1_LMi_1p"
FT                 /translation="MPRIKKFSPKLKFRGNKYIKINEVSGSKEPRMLDIKK
FT                 ISTSRNKLQCLQGISSQSACGNGHSFGNIVVNLSMLCDLISKNTVCRICGG
FT                 DVSLGENQCLRKGIVSNLTLSCTKCGAVATTMTSKMANNKLYENNIRLVYG
FT                 LRSIGKGMEAGKLLCALLDIPNPPAKFKTYNNVIGTAVAEVCNNSMKEAAK
FT                 EALKESDDSESSDICACFDGSWQKRGHTSLNGVVTATSFDTGKVIDVEILS
FT                 KYCQICGSGTEKRDEHYCHMNYTGPSGGMEVAGVLRIFNRSVANRGVRYTQ
FT                 YLGDGDSKAYDRVCAEQPYGPNVTISKLECIGHVQKRMGSRLRRLLKEKSK
FT                 IVLEDGKKIGGKGRLTNVEIDRLQNYYGLAIRRNVENLENMKKAVWAIYFH
FT                 KLSTNENPVHSLCPNGPDTWCKYRRSDTYDHKHSLPAAVMNEIKPIFRDLC
FT                 KDTLLKKCLHGKTQNLNECVNSVIWTRLPKTVFVQITTLKFGVYDAILCFN
FT                 DGVTRKLDVLELLGIQSSGNTAKSLVQIDKERIRKADIANLKCTKEARQKR
FT                 RGTKRRKEDQYDSDDAQYGAGKY"
XX
SQ   Sequence 2566 BP; 849 A; 388 C; 537 G; 792 T; 0 other;
     ggggagacgg aaggcaactg ggctcaaaaa ttcgattttt agattttagc gtatttgaaa        60
     tgcctggtat ttcctgcgtg aaacagtttt tgttttatat aaatccgaca attttttcgt       120
     gagttatgat ggtttttctg acgctctgtg caatctggcc acgccttccg ttttgcgcca       180
     tgcggagaaa atgcacacag cattctttta ctccttgtat attatttcat gcttctattg       240
     tttttatcgc ttcaatgttt cctaccctgt atctactatc gatacttttt gttccgatcg       300
     tgtttgttat tgttttcgaa cgttattggt tgaacttggt gaagtttgtt gtgagtgaag       360
     tacgtcttga tttgtatttt cgttggtccc gcgtgttttc ataaaaatgc cgcgaataaa       420
     gaaattctcg cctaaattaa aattcagagg aaataaatac ataaagataa atgaggttag       480
     tgggtcaaag gagccgagaa tgttagacat aaagaaaatc agcacatcaa gaaataaact       540
     gcagtgtctt caaggcattt cctcccagtc agcttgtgga aatggacatt catttggaaa       600
     tattgtggtg aatcttagca tgctctgtga tttaatttcc aaaaatactg tctgcagaat       660
     atgtggtggt gacgtatctt tgggtgagaa tcagtgtctt cgtaaaggga ttgtgtcaaa       720
     cctgacgttg agttgtacaa aatgtggtgc agtcgctaca acaatgacat caaaaatggc       780
     aaataataaa ttgtatgaga acaacatcag gctagtttat ggtctcagat ctattggtaa       840
     agggatggag gcaggcaaac tcttatgtgc attacttgac attccaaatc ctcctgcaaa       900
     atttaagact tacaataatg ttattggaac tgctgttgct gaagtttgta acaattcaat       960
     gaaggaagca gctaaagaag cactcaagga aagtgatgac agtgaaagta gtgatatttg      1020
     cgcatgtttc gatggcagct ggcagaaacg tggccacact tcactaaatg gtgtcgtgac      1080
     agctacatca tttgataccg gcaaggtaat tgatgtagag attctaagca agtactgtca      1140
     gatttgtggc agtggaactg agaaacggga tgaacattac tgtcatatga attatactgg      1200
     tccaagtggt ggcatggaag tagcaggagt tctcaggatt tttaatcgtt cagtggcaaa      1260
     cagaggtgtc agatacacac agtatttagg ggatggtgac agcaaggctt atgaccgggt      1320
     atgtgcagaa caaccctatg gtcctaatgt cacaatttct aaattagagt gcattgggca      1380
     tgtccagaag agaatggggt ccaggttaag aagattatta aaagaaaagt caaaaatagt      1440
     attggaagat ggtaagaaga taggtggcaa aggtcgcctg acaaatgttg agatagacag      1500
     attacagaat tattatggct tggccataag aagaaatgta gagaatttag aaaacatgaa      1560
     aaaagctgta tgggctatct atttccataa gctatccaca aatgaaaatc ctgtgcactc      1620
     tctttgccca aatggtcctg acacttggtg caagtacagg agaagtgaca catatgacca      1680
     caaacattct ttacctgcag cagtaatgaa tgaaattaaa cctatattta gagacctttg      1740
     taaagatacc ttgttgaaga aatgtcttca tgggaaaacc caaaatttaa atgaatgtgt      1800
     aaattctgtc atttggaccc ggttaccaaa aactgtattt gttcagatca caaccctcaa      1860
     atttggtgtt tatgatgcta ttttatgctt caatgatggt gtaactagaa aattggatgt      1920
     tttggaatta ttgggcatac aatctagtgg aaatactgca aaatccttgg tgcaaataga      1980
     taaagagaga atccgcaaag ccgatattgc taatttaaaa tgcacaaaag aagctagaca      2040
     gaaaagaaga gggaccaaga gaagaaaaga agatcagtat gattcagatg atgctcaata      2100
     tggtgcagga aaatattagt ggtaagtaat tctcatcaat aactgtacta gaattgcaat      2160
     attaaacttt aaattgattt ttctcaaaac tacatttttt ttttactttc aggtaccatt      2220
     atttgataaa ctaatggggt tagaaagatg aaatttggtc tttttgtact gaagatggta      2280
     ataaatcatt acaagtaaat tgagaaccac aaaacaatca tcaactgttt tataataatt      2340
     aatgtactaa aaaagttaaa ttttactggt gaaagaataa aaaaattttc ttcaaaacca      2400
     ttagagttat tatgttcatt ttacttgtaa attgagacat atatgttata tatatgcagt      2460
     aaaaatttcg ttgttttatc acttatagtt cctttgaaaa gtgtacctat tcaaagggta      2520
     aaatagcatt ggcagaatag ggataaaaat tgccttccgt ctcccc                     2566
//
ID   Kolobok-1_NVi repbase;    DNA;    INV; 3222 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Kolobok-type family - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3222
RA   Bao W. and Jurka J.;
RT   "Kolobok-type DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 768-768 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           709..2463
FT                 /product="Kolobok-1_NVi_1p"
FT                 /translation="MAKRRDVRGRFASTHPDKKYSRGRNKKRPRGFFGSKN
FT                 NEDDQVEKRPRLSASAKKISTSTVPDAASTKNRLIDVSILYSELQDVLCCG
FT                 VCHGNVHFSESSVQGLAFKIDVVCEQCGQISAINSCKKVGPRSNACEVNRR
FT                 SIIALRALGHGHAGLSTFCGIMDLQKPVAQSAYDTIRNQLSEVCQKVAEDS
FT                 MKAAVQEEMEATGSNQLDVSGDGSWRKKGFSSLQGLASIIGNKTAKVLDVA
FT                 IKNSFCKACDNWSGKEDTIPYQEWYEEHEPNCNANHQGSAGKMEVDGIVQM
FT                 FQRSKEEYGVMYKNYIGDGDSKVYKAVTEAQPYGSRLTVAKKECIGHVQKR
FT                 MGTRLRNLKKSLGRQTLSDGKGIGGRGRLTAKVIDRLSSYYGKAIRYHPDS
FT                 VEDMSNAIWATFYHQLSTDAKPQHHLCPKGASSWCKWQKAKVHKTLKNFKH
FT                 KSSIPSAIMEKIKPIYEDLTEPNLLERCVGGFTQNSNESFNNSVWKLVPKT
FT                 SFSGLSVLNIGVYTAVTCFNDGRTGFLKIMEQFEVMPGKAACEWVESSNDS
FT                 RLFHAERKKLASTKEARVTRRKAREELQDDAYGAGEN*"
XX
SQ   Sequence 3222 BP; 1076 A; 504 C; 697 G; 945 T; 0 other;
     gggggcacaa cacctttgaa atcatgaaaa aatcgatttt tttttattcc gtattttgat        60
     aggaaatttc ccgtagaata tgttcctatt gtcgttattg cgctaaaaaa attttttttc       120
     aaagttgtac agcaaacgct aaaagtactt tttatctgtt ttttcataaa tttacgaaat       180
     tcagttaatt cattttcaaa taaataacaa ttattatttt aagttccagt gagtaaaaaa       240
     ttgaaaaaat tgacaaaatt tatgttatat atatgttaaa aaattaattt ttatgtttaa       300
     accgatatat aggcgatatt attcattgat aaaaaagaac gaaaaatcta ctgtttgaat       360
     ttttttgaga ctgtcttgtg actgtcatca ttcctttcgt tccgattcca catgtctaca       420
     cctacgctgc acgggtatag tgttgtatat actgaacagc tgatacatgt acacaaatac       480
     agctattatc agctatcagt atatgtcagt tttttttgcc cgtcgttaat taattaacaa       540
     ttgtcagtca gtgtaaatgt ggattatttt ttgcgcgttc gtgagtgaat ctgcgagtgt       600
     gataggtgcg tttatatagg ttaagttttt tcaaaaagtg caagtgtcag tgaaagtgtt       660
     atgtgataag tttaaattaa ataaattaaa tagtgtaagt gtagcataat ggctaaaaga       720
     agagatgtca gaggaagatt tgccagcact catccagaca aaaaatattc tcgaggaagg       780
     aataagaaga ggccaagagg attttttggc tctaaaaaca atgaagatga tcaagtggag       840
     aagagaccaa gactttcagc atctgcgaag aaaatcagca catcaacagt tccagatgct       900
     gcttctacaa aaaataggct tattgatgtc agcattttgt acagtgaact tcaagatgtt       960
     ttgtgttgtg gtgtctgtca cggcaatgta cattttagtg aatcaagtgt acaagggctt      1020
     gctttcaaaa ttgatgttgt ctgtgaacag tgtggtcaga taagtgcgat aaactcttgc      1080
     aagaaagtgg gtccaagaag caatgcatgt gaagtgaaca gaagaagcat tatcgctctg      1140
     cgtgcacttg gccatgggca cgctggattg tctacctttt gtggcatcat ggatctgcaa      1200
     aagccagtag cacaatctgc ttacgataca attaggaatc aattaagtga agtgtgtcaa      1260
     aaagtagctg aggactctat gaaggctgca gttcaagagg agatggaagc tacaggaagc      1320
     aatcaattag atgtttctgg cgatggctcc tggaggaaga agggcttttc atctttacaa      1380
     ggcctcgcca gcatcattgg aaataaaaca gcaaaggttt tggatgtcgc catcaagaac      1440
     agcttctgca aagcatgtga taactggtca ggcaaagaag acacgattcc atatcaagaa      1500
     tggtacgaag agcatgaacc aaattgtaat gctaaccatc aaggcagtgc aggaaaaatg      1560
     gaagtggatg gaatcgtcca gatgtttcaa cgttcaaaag aagagtacgg tgtaatgtac      1620
     aaaaattata ttggtgatgg tgactcgaaa gtgtacaaag cagtgacaga agcgcaaccc      1680
     tatggcagca ggttgaccgt tgcaaaaaaa gagtgtatcg gtcatgtgca gaagaggatg      1740
     ggtacgcgtc tcaggaattt gaagaaatca ctaggacgac agacactctc ggatggaaaa      1800
     ggaattggag gaagaggacg actgactgcc aaagtgatcg acagactgtc ttcatactac      1860
     ggcaaagcaa tcaggtatca ccctgattcc gtggaagaca tgtccaatgc aatctgggca      1920
     accttctatc accagctgtc aacagacgca aagcctcagc accacttgtg tccgaaagga      1980
     gccagcagct ggtgtaaatg gcagaaagcc aaagtgcaca agactttgaa gaattttaag      2040
     cacaaaagca gcattccatc tgctattatg gagaagatta agcctattta tgaagattta      2100
     acggaaccaa accttctgga aagatgtgtt ggaggtttca cacagaattc taatgaaagt      2160
     ttcaacaatt ctgtgtggaa gctggttcca aaaacatcat ttagtggctt gtcagtgctc      2220
     aatattggag tgtacacagc tgttacgtgc ttcaatgatg gtcgtacggg ctttctgaag      2280
     attatggagc agtttgaagt catgccagga aaagctgctt gtgaatgggt agaaagcagc      2340
     aatgacagca gattattcca cgcggagagg aaaaaactgg caagcaccaa ggaggcacgc      2400
     gttaccagga gaaaagctcg agaggaacta caggatgatg catatggagc aggtgaaaat      2460
     taaattttgt aagtacttac atctaatatt attaatattt tcattttata ctttcaagta      2520
     tttcttttta aaagttattc ttatcacttt tcagcaaatc ttggacagta agtgggttac      2580
     cacagctgcc tcataaagtt gaggttatga tggacaggag acacaaaatg ccttgtgact      2640
     acggtgaaaa aaagataaga gctttgaaga aattttatta ataaaaacat gcttttaaat      2700
     gaaatgtact aatttaaact ttttgtgttc tagatacatc tacaccccaa caggagtttt      2760
     tatgtgtcca gatgcgacag tctggtacac aatgttatat tttgatggat atcaatgatt      2820
     ggagcaataa aaaaatgata gagataagta ttacggtgat tatgtataag tattgtaagt      2880
     caaaacttta atgctgattt tctcctaatt gtgtttttct caatttcagg tgctgcaccg      2940
     taagattcca aaggaacgga tggaccaaat gagctcaaat ttggtgatat tgtttaaaag      3000
     tttgagctca tttgggccat tcgttccttt ggaatcttac ggtcagtgaa ttatggacac      3060
     cctactatac gtaggtatta tagaggtata tcgaaggtct aaaacaataa aaataaaggt      3120
     aattatatgt aagaatagca aaaaaatttg gtttatttat ataagaaatt ataaactttt      3180
     aatggaaaat tttgattgta atttcaaagg tgttgtgccc cc                         3222
//
ID   Kolobok-1_PBa repbase;    DNA;    INV; 1561 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1561
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 611-611 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. TSDs are  4-bp long, TTAA.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..975
FT                 /product="Kolobok-1_PBa_1p"
FT                 /translation="MFSVTWQVVRNLKKKLASCKKFKKDKKGLGGKGKLTG
FT                 KLIDELSLYYGLAIRRNSDSVEKMRNDIWATLYHKISTDEKPQHDKCLSGP
FT                 DTWCSWQKAKTCNTLNLYTHKPAMSDEVFNAIKPVYEDLTSDDLLNRCLGG
FT                 YTQNSNESFNAIVWSIAPKAYSSGKKVLDIAAFLSVCIYNDGMSSLMQIMQ
FT                 ILGLKIGINCYNFCEEADEQRIQRSERSLTEMAKEARSTLKSSKKEENKQN
FT                 SLLKGQLYEAGIAD"
XX
SQ   Sequence 1561 BP; 531 A; 275 C; 294 G; 461 T; 0 other;
     ggggtaacac caccttgacg atttcaaaaa atcgattttt tttgcgctaa aaaggttcct        60
     tagggtctta aaaataagat acaattgatc ctatatgtga aaggaattct tttcccctct       120
     ttttttgaag tttcctgcgg cgccttcggc gcctcgaatg agcgcgcagc ggcgaaggag       180
     caggtatacg ttttggagac tctttagata atgttttcag ttacctggca agttgtaaga       240
     aatttaaaga agaaattggc aagttgtaag aaatttaaaa aagacaagaa aggacttggc       300
     ggaaaaggaa aattaacggg caagcttatt gacgaattgt ccctctatta tggattagcc       360
     attcgtcgaa atagtgattc tgttgagaaa atgcgaaatg acatctgggc aacgctatat       420
     cataaaattt cgacagacga aaagccacag cacgacaagt gcctgagcgg cccagataca       480
     tggtgctctt ggcaaaaggc aaaaacttgc aataccttaa atttatatac acataaaccg       540
     gctatgtctg acgaagtttt caacgcaatt aagcctgtgt atgaagattt aaccagcgat       600
     gatcttctta atcgctgctt aggaggatac acgcagaaca gcaatgaaag ctttaatgcc       660
     attgtttggt ccattgcgcc aaaagcttat tcaagtggga aaaaagtatt ggatattgca       720
     gcgtttttat ccgtctgtat ttacaatgat gggatgagca gtttaatgca aattatgcaa       780
     atattaggac tcaaaatagg cattaactgc tataacttct gcgaggaggc ggacgaacaa       840
     cgcatacaac gatcggagcg ctcgttgacg gagatggcca aagaggctcg atctacgctt       900
     aaatcgtcaa aaaaagaaga gaataaacaa aattctcttc ttaaaggaca actgtatgag       960
     gcaggaatag cagattagag gtaaatttaa atttactgtt tttataaacg aaaaaaagtt      1020
     acttaaaact ttaaacgcgt ttttctcaaa acgacttttt tccgaactag cggacacata      1080
     actcaaacaa atattaaccg atttacttga aatttggtgt acatcttcaa aaatacatat      1140
     ctcagggaag tacgtaggga tttttcgatt aattaaaaac ttttcttttt ataaacaaaa      1200
     aagtcacgat tttttccatt aaaatcgaac gtttttcgaa aaatcttcac tattttcaca      1260
     aaaatcaaaa tttcgaaaat tccctacgta cttccctggc aaatttaatg tagttttcaa      1320
     aaattttttg tttttcttct agctcaaaat ttgcagctgc tacctgtccg ctagtatagc      1380
     gcgacctttc aactttggcg gtatatttat agatttctgg gcaccattaa aaaaataaaa      1440
     aaaggttttc atagacttta aaatgtatat aataaagggc aaaaagcgaa ttattgttaa      1500
     ctctatttat tttcacacga aagatcctca aaatttaggc ccgtcaaggt ggtgttaccc      1560
     c                                                                      1561
//
ID   Kolobok-1_SIn repbase;    DNA;    INV; 2775 BP.
XX
AC   .
XX
DT   07-FEB-2012 (Rel. 19.02, Created)
DT   07-FEB-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   DNA transposon: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2775
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 317-317 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           775..2169
FT                 /product="Kolobok-1_SIn_1p"
FT                 /translation="MRILGLGSAGCNKFCGLMDLASSFLSQHVYEAYIESI
FT                 MTNVQRVANQFFCSAAKQEKEETLKANNTAELIVSGDGTWQKQGFTSLYGV
FT                 ASLIGYYTGKVVDICVKSSHCKKCEYWNKKCNTEEFAEWHEEHIRNNECDS
FT                 NHDGPAGNMEVGAIVEMFKRSMEKLSVMYKFYIGDGDSKTFTGVKNAKPYG
FT                 DNVQIYKKECAGHVQKRMGTRLRNLVKNVVEEVLSKGKIIKKELLSGKGKL
FT                 TAKLIDKLTIYYGLAIRRHSDSVQNMKNAIWATFHHYSSTDKNPQHAQCPS
FT                 GADSWCAWQRALAADDLASFHHDYEPFPNIVVKHIKPIYEELSNDELLERC
FT                 LGGFTQNSNESLNHLIWKIAPKKLSSSSKIVELAANIAACQFNEGTYALLV
FT                 FLHDIGVSLGPSAHEYHRKQDDERVKRADQQAAITTKEERIRRRQAQKDTL
FT                 DIAISAGTLEYGPGTTTLCK"
XX
SQ   Sequence 2775 BP; 935 A; 525 C; 586 G; 729 T; 0 other;
     aagggcttac aggggtcaaa aatcgtcaaa aatttttatt tttttattcg atagtacaaa        60
     gtctcaggag tattgtgtta aaatttcaag tcatttggtg aagaattgac ggagatatga       120
     ttttttgaag tttctgcctc ggagacccgt acggactcac acgtatacgc ggcaggtata       180
     cgaccctccg gcagcgcccg accgtcgccg taacgggttt ttccgctgaa atttctttgt       240
     gcatgcaagg ccccttttcc tgtttagacg tgatttacta cctgcgtgtt tcgacacatt       300
     tattccgttt ttttcgaaag ggagagaacg cacagtttgc cgctgagcat cgaggtgtgt       360
     agacgtatac tcgtgtcgtt aaaatgccga gattttgtaa actaagcaga gatgatagac       420
     caaccggtta gatcgaagaa aagaccgaac ccaaaagtaa aaaagacccg acgaaacaaa       480
     cacgaagagc gcgtcggcaa aaaaagtgcg tttatcgact tctccgaaag taccggagga       540
     cgcggaaaaa catttccgaa tcatagactt tctactagtt tttacgacga tttctaactt       600
     agtgtaatgc gcaacctgtg gtgaaaaagt gtattttaaa tcatgtgaca agcaaggact       660
     aggatttaca atagaagtga aatgcgagaa atgtaaactg ccaaaattcg ttccgtcgcg       720
     tcgtgtgaga agatcggtgg aaagtatgaa ataaactttc aatttatatt tgtgatgcgt       780
     atattaggtt tgggaagtgc gggatgcaac aaattttgcg gattgatgga tcttgcaagc       840
     agtttcctca gtcagcatgt gtacgaggct tatatcgaaa gtataatgac gaatgtccaa       900
     cgagttgcaa atcaattttt ctgctctgcg gcaaagcagg aaaaagaaga aacgctgaaa       960
     gcaaataata cagcggaact aattgtgtca ggagacggta cgtggcagaa gcaggggttc      1020
     acatctttat acggcgtggc ttcactcatc ggatattaca ccggaaaagt tgtcgatata      1080
     tgtgtgaaaa gctcgcactg taaaaaatgc gaatattgga ataaaaaatg caacactgaa      1140
     gagtttgcag aatggcacga agagcatata cgaaataacg agtgtgacag caatcatgac      1200
     ggaccagcag gaaatatgga agtcggtgcc atagtcgaaa tgttcaagcg ttcgatggaa      1260
     aagctctctg tcatgtacaa attttacata ggcgacggag attcaaaaac gttcacaggt      1320
     gtcaaaaatg ccaaacctta cggggataat gttcaaattt ataaaaaaga atgtgctggc      1380
     catgtgcaaa aaaggatggg cacacgttta cgcaacttag taaaaaatgt tgtggaagaa      1440
     gtattatcga aagggaaaat aataaaaaaa gaactacttt ctggcaaggg aaagctaacg      1500
     gctaaactta tcgataaatt gaccatatat tacggattag ccatcagaag acattcagac      1560
     tctgtacaga atatgaaaaa tgcaatttgg gcaacgttcc accattacag ctctacagat      1620
     aaaaatccgc agcatgcgca gtgtccgagc ggcgccgact catggtgcgc ttggcaacga      1680
     gctctcgccg ctgatgactt agcatcattt catcacgatt acgaaccgtt cccaaacatc      1740
     gtagtgaaac acataaaacc aatttatgaa gagttgagca acgatgagct tttagagcgt      1800
     tgtctcggag gatttacaca aaatagcaac gaaagtttaa atcaccttat ttggaaaatc      1860
     gcgccgaaaa aactatcaag cagttcgaaa attgttgaat tggcagcaaa tattgctgcg      1920
     tgccaattta acgagggaac gtacgctcta ctggtatttt tacacgatat cggtgtatct      1980
     ctcggaccaa gtgcacacga ataccacagg aagcaggatg acgaacgcgt gaaaagagcc      2040
     gatcaacaag ctgcaataac gactaaagaa gaacgaataa gacgaaggca ggcacaaaaa      2100
     gatacgttgg acatcgcaat ttctgcggga acacttgaat acgggcctgg aacgacgact      2160
     ctatgtaagt aacaaaaaaa aaagtgaaaa attctcatct tatacacgta taaatgtatg      2220
     taaaacttta aacgcgtttt tctcgaaatg ttgttttcaa agtcggtgtc catcagaact      2280
     cagcgaatat gcaacgatcg atttctaatt ttgcacacac tttctacaca tatatgccca      2340
     tcccccaacg atcttatttt caaatttttt tttttcgatt ttacagctac aaaatggccg      2400
     acttttagcg ctgaaaaaca cgatttttgc ttaaaaacgt tataaaaaaa ttagaaatga      2460
     aaaaaaaata ttcggtcatc gttgggggat ggcaaaacat gtccagaaat gaaacctttt      2520
     tggttttttg ctttcagata aacctacatc aagttacgag ggacaccgca aagcgctttt      2580
     tttctacagc gtctccgaaa aatggctgcc atcggctgaa tttacaatat ttttacttga      2640
     aatttttaca aattatactt caaaatacac tttattgaat acactttatt gcgtaaatgt      2700
     atgtcataac cgaacacaga aaaaaaatca caaaaatctt gtattttttc actcaataga      2760
     cccctgtaag ccctt                                                       2775
//
ID   Kolobok-2_AA repbase;    DNA;    INV; 8071 BP.
XX
AC   .
XX
DT   16-MAY-2011 (Rel. 16.05, Created)
DT   04-JUN-2011 (Rel. 16.06, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-2_AA.
XX
NM   Kolobok-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 8071 BP; 2666 A; 1402 C; 1516 G; 2487 T; 0 other;
     ggcttttcgg gaagtaaatg caacatggct tccaccacaa tcattgataa ttatttacca        60
     acacatacaa acagaaacta tttcagaatt aaattagtaa aataaatgat tcacccctgg       120
     tatatcctca caaaattcta atgcattgaa gtgaatactc tgttgaactc attgaaatct       180
     gttttttcaa attactttga gatatcagct agttctactt aatagaagcc aacggttcac       240
     tcactgcttc tttatgtttt tcttagcaca acagcacgtc ccgatttcat gacaacaatt       300
     aaattggtca gtttacctaa tatttccatt ggaacactct agaaaactat atcacttcac       360
     ttgttatact gccatgcttg agttaaccta atttatatat tgattaattc actagattta       420
     ataatttgcc ttctaaactt ccatggacaa aaccaaaata taattccatt ttcattcatg       480
     acatacacac tatatgatct agtataagtg caaaaagatg taaacaatca ttgatcattg       540
     taaccagtgt tgctagaaaa ataaattaca aaataattga acattaagtt aaaacccaat       600
     catctctatt ttgtaattta ttacaaaaat ttgattgtgg aacttcgttt taaatttctg       660
     aatttatgtt taaaattgtg aatatgaggc agaaaaaaaa actttttcga tggatggtac       720
     gatattattc ggtaaattgg caacgcttgc atccaggcac ttgcgacagg aaaaagtgtc       780
     aacaaaaaca aataataaca tgccgagagt ttcaaaaaag aggagagccg ggattttatc       840
     ctggattacc aggaataaac acccagagga caacccgccg gatgaaatcc gtttaaatac       900
     atccgttgcg attcgtgata ccgacccgga tctattggaa atcgctcaac cagaggcaga       960
     aatcgatggt aagtttcctt agaattccaa aaacgttttg taatggcctt atgtttcagc      1020
     ctggagcact gaattcagtg atgttcctga tgcatcacag tggttggaag atgtgcccct      1080
     tccccttcag aacatcggga accacaaaga aaattgcagc ccccgtagtg attgtgaact      1140
     tacagaatat gtcaacagtt tggcatactc taatgcaatg ggtgatgaag agctggagct      1200
     gcttctagtg ccatcgttag agaatcccat ggaaccgatt tttgcaaatt tttccgaaaa      1260
     tttgtttgct gattttaatt taaaatcacc ggatgagctt gatgacgcag gaaaacgttt      1320
     ggaatttcat acgaaaatcg atacatttcc gagccaatgg attatagatg ctgaattacc      1380
     atcgccgatt cttagtggcg gccaagaaga aagtacgagc acaccggcaa cctactcgaa      1440
     agctaatgaa cgtaagcaag taatcgaatc ggacatcagt tatggacttg atcaaacggc      1500
     gagtctcgaa acaaaccatc tagtattgcc aacatcatcg gtgaccgcgt caagagaagc      1560
     gctggctgaa aattatattg acttagtcgt aacagacagc tccagcaaaa atcaaggtaa      1620
     aattgtattt cttttctaac gagtgtcgat gtttatatta ttattatttt ttaggcaacc      1680
     ggcttcaaaa aagtgacagc aatcaacatg caaaaagaac gggttggaat ttgagtcgat      1740
     caaaaacaac tataatttca attcccggtc gacctctagg agcatccagt tctttgaata      1800
     tggactgtta ctgcgaagcg tgtctgaaga gtgctgcgca acatcagaag ccacaattta      1860
     atgagactac aacatccaca agtgtagaaa gcattgataa atcaatcgaa gccaagatga      1920
     aggaaattta tgcggaattg aacgttgata aacttcaatt gcatccagga gcacaggatg      1980
     acaaaccatc ttatgctaac gcgcctgacc gattcaactc acacaggtaa gagtttacta      2040
     attgtgtagc aatagagctc attagtttga aaatatgcac agggagtatg gggttgtgac      2100
     ctatttttta ataagagctt tttgtaaagt gtttgtactg tacactgccc atgttcacat      2160
     agtcgacgta agcgccaata tgaccaaaat gcatttttgc attgatatga gttctttacc      2220
     taataataca cttgttggac atgcgaacag cacttttttg ttctgcaata caggtcggac      2280
     tcgattatcc gggattcgat aatccggaat ttcagactcg attatccgga atatatattt      2340
     taatgttcta gttcagatat tcaagttcgt gtatcgcaga tttcattttt tcttttagtg      2400
     attcgattat ccggagtgaa aaggaaatcg atactccgga taatcgagtc cgacctgtat      2460
     ttgaattata aaaaaaacgg atttacatga gcacatacac caatttatcc gagcgtacac      2520
     atggtttgcc tagtgtttat tcgaaaagtt tagcgtataa atcaggttgc tataacagtg      2580
     acctggtgtt tacgtcaatt cgtccatata atcatttgat ttattaaatt cactagttag      2640
     acggttaaaa tgcagattac aagagtaaga aattaatcaa aaagtctcct ccagtagctt      2700
     ttgaatttca atctttagca aatgcacaga taatttgatc gaaattgttg aaatattcat      2760
     gcatgtaact gggaacacaa aaacacattt tctcagcaat gatgcaatgg tggttacgtc      2820
     gaccatgcga acatgagcag tacagtagtc acattattac gagtcaccca ctattatggg      2880
     taattcccat ttgaatcgca tgtgcaacaa ggtgactaat aattgcgatt agatgaccca      2940
     tagtagtgcg agtagtgtgc tatacagtag tcactataat gggttatttc catccaacac      3000
     tgagagagag gaaacagctc actaacagta tatatgttta cttgccttct ttgatttctt      3060
     tctatcattt ttgggttgtg aacaacggtt agattagcat aatcagtgtc aaaaccatat      3120
     tcacacctca gcattaaaaa aggacatgaa agaacacaaa tagtagtatg ggaacactca      3180
     actatattta aatattcatt tttcaactat atttaaaatc tattttattc tgacgaatgt      3240
     aacgctctgc gcttccaatg tatagttttt agtgaccttt agtaacaggt tcgccttgac      3300
     ttttggcagc tcgaaatcta agtcaaatgt ctcatctatc tagatgagta attatagtgt      3360
     gaacagtgta ctatacagta gtcacactat tacgggtcac ccactagtat gggtcatttc      3420
     catttgaatt gcatgtgaaa cagattgatt aataatcgtg actaggtgac ctataatagt      3480
     gtgagtggtg tacagtgcag atgcgatctt tagatttttg tgaatgaact gtttgtatca      3540
     tcaagcattt ttgatgataa tcatatttca ttcaaatctt agttatgtga cgacggttga      3600
     aaaatttaag gcacatattg tgcaaaagtg tagaactgat ttgctcatca gcacgttttc      3660
     actgaatgtg gtgataccac ggtcaaacag acgtaacata tgtaacatat taccctcata      3720
     ccagagtctt ttttttcaaa ctcgattcat cttagcatta aacaaacgaa aatagtttcg      3780
     tagttttcat tatttatttc ctccgttttt aatctacatc tatttgtctg tgtagaagca      3840
     ttggggaacc cgctataaaa gcaaaatatg tccactaaaa gcatttatct gtgggaagat      3900
     tcctatagag ttgtaatata tgaataaaat aagctacggg tcctattcct ttcgtaattg      3960
     catatctaac ctatgtacta gctgtaattg catagttgtc ccaaacgatt cttaaactta      4020
     taattgtaat ttgtattgta aatgtaagat ttttacacca ctgttttttg cagttacaga      4080
     tgccaagcga ttaatggaga cgagtttact caaatcacaa ttccaaaatg gaaaagcctt      4140
     gaaggacgtc gaattgtaga ttataattat tttattcagt gggttgtaat ggctcaggca      4200
     actcactcgc gattttgttg cggtgtttta tgtcctcggc aagaagaagt taaatcgatg      4260
     tgttcaaagt tgtggctgat gtgtaatgta tgcaattata ttgtgaaagg atcttctgaa      4320
     gaaccaagtc gtggtaccag gctaaggttc tgtacagact gggcgattct aaatagtggc      4380
     tctacatatt ctatggcgca ggaaatgttc tcctttttga acataccgtt catggacaga      4440
     aaaacgtttt ttaaggatga actcgcgatg gatactgttc tggaagctgc attacaagaa      4500
     tcaatgaaca aagcgattga agaagaaatc aatcttgcct ctcgagaatt accagaaaaa      4560
     caaataacgg acgattcccc tatcaacctt tgttgtgaat tggatggatc ttgggggctg      4620
     agaagtaacg gacataggta tagttcggct tctggctgtg ctgcacttat tggcacccga      4680
     agtaaaaagg ttgtgtacat cggcacgagg aataaacgat gttcggcgtg taatcgcaac      4740
     actgccaata aaagtgcaac tgagcacaaa tgttttaaaa attattctgg atcttcagga      4800
     gggatggaga gtgatatcgt tattgatgga tttaagacat tgtttgagaa aggagttaaa      4860
     ttcacaacca taataactga tggtgattcc accactgtat ctaaattgaa aaacagttgt      4920
     tcgtatggcc atgagataag acatcaatta tgctgcaatc acactatgaa gaacgttgga      4980
     aaaaagcttc gagaagtatg atgtaggaaa cctttacaac aacacacggt gtatattata      5040
     ttctatatat tctagataaa atgtcccaaa caatttgctg atcatttgtc aagccgtatc      5100
     gaacgtataa cgaaaggcgc tagaagtgcc attaaacact gtgccgattc agggtctgaa      5160
     gacattgaag gactacgatg tgacattaga aatgtgcctt accatgtgtt tggtatgcat      5220
     agtgcttgtc gcgactattt ttgcaaacac aagaatgaat ctgatgaaat tcccagcatt      5280
     atatctgatt tgcagaaatg tggagtgtgg gacaaaattt cagttattat ggaaaaacta      5340
     gcatcaaaag cagaattctt gtgtgagaac aaaacgagca acttgtaagt attctagtca      5400
     tttttcgctt attatgttat tcactatttt cttcttcatc ttgacattat gggctcactg      5460
     ggacagagcc tgctttttaa ctgagcgttt atatacaatt ccacagttgt taatttagag      5520
     cttgttaatt actttatagg gctgaaaatt tgttctgtcg tctctgtaag tacaatgtcg      5580
     gaaagcggat tgacactatg agtcgtggat cgtatcagag acgcgtccat ataactgctc      5640
     tgatgtgcaa cgaaaactat gaatggcata atacatacat ggagaagttt acgggtgaag      5700
     caccgggtta ttttaccaaa aagatgtttg ttgaaaaagc acaatcgtta gaacggagta      5760
     ggaaatctca gaaaaatccc aataataatc gacggtcgaa acatgtacaa aaggaaaagg      5820
     atactgatta tggagaggca gcagtcgaag cagcagagat tactgcactc gagcagtcag      5880
     ttgttgatgt tgaaacaatg cgacagaaat atcaggtaat gcagcaacag gaaaaacaca      5940
     gacatgtaaa cgacacattc acgtttctga ccaacactat atttttaaac gggtaattca      6000
     aatatgccgt aatatacaaa ctaattcgtc tatatgtctg taaattaagt atataaataa      6060
     tattatattg atattttcag ttgcataatg tcacaaaact aagactagat aattgcctaa      6120
     ctataactga aatggaggat ctagcgaagg gacgtatctt gtcaaaattt atacctgaaa      6180
     taataaatgc acgggattca acaaaatgga agaaatgtga tacattactc caaaccacca      6240
     atacctggaa tttcttgaag tcaaaccgag ctgtggttgg acttgtgcta cgaattttga      6300
     aggaagaaca tgcgctcgat ctaaaagaag gccacatgtt cattgatccc tgtcacgagt      6360
     tcttgtgttg cgttccggat ggtaatttga ttcactgatc ttgaattgac ttatttataa      6420
     tatttaatgt tcaaattgca gcggtctctg cagatggatc tattatactt ttaataaaga      6480
     aaaaggactc ctctggggat ataagagaac aagccgcgac aacaaaaggc gttttaggat      6540
     gcaagctgaa gaacggagaa gttatcttag atcgtaatac aaacatcgaa attcaagctg      6600
     ccatgcacat atcgtcaagc gcaaagtgca tagtgtttct tatgttgggg acaaatgttg      6660
     caaaccatct tctaaagatc gtagatgaag aaggttcatt ctttacgtct aagattgaac      6720
     caaaggtgaa aacctttttt gaagattatt acttgaaaaa actgtttgat aaacaaattt      6780
     gtattaggca gtgaggttaa atatgaacca aaatggatct gaatagagca ataaactaca      6840
     atacacgcag gtgtaactgt ttcaaactta caatctttgt ctctgctgaa tcgaaactga      6900
     aacctaaatt ttcgctaaat cttggcctca attttattct aaaaagcagt ttactcttct      6960
     ttttcgtctt cttctttcta gtgtgacgtc tcaattggga caaatcttgc tataacaatt      7020
     ttaccttagt gaatcgtgca tcgtaaatct ctagcacgat gctttgaaat gaaaagtagt      7080
     tgattttaaa catcatatct cttgcgaatt tgtattgagg taaaatacaa tgcatgcacg      7140
     atgcggattt aattctggga aacatttatt tctacttttt atttgcaatg ctgttatgtt      7200
     agcaacgttg aatccaagaa atgtttgatt ttattgagat tgaacagtag tgcaaatcca      7260
     agagcagaac tatcgatacc aaacgtgatg atttttattg tatgtccaag ataattattc      7320
     ctagattgat tggaagccct caatgactcc ttaagaaatt aaagattgaa tttatagagc      7380
     aacttttggg gaactcttta aattattgac ctaaaactac tagagaattc gacgaatatc      7440
     tgaaagattg ccataaaggt aagtttcgct gcagaaataa gcgtacctct gaagaaatca      7500
     cttcaattgc taaagaaaaa aaaaaatggt agacaagatc tcatcacatt tgatcggaaa      7560
     tatctacaac tttgctgaag ataccatgta actattcctt gatttttttg agttatgtca      7620
     attataaaaa tttgtcaaaa aaatcatatg ttgaaattca atttatgtct gtagaactgt      7680
     gaaagtttta ttcaaattgg ttcgtaaata cctcagatct aaccctctac agttgaccat      7740
     tttttgcgga aaactgaaaa tattacaaat gttttgtcca atactgtatc tctgtagctg      7800
     gacatttgcg tttcatttgc cacttaattt gatacttgtg tgcatagtta gttatgtaga      7860
     taattgactt tattatgtaa agcataaacc tctgctaggt gaattagttt tccatggatt      7920
     gttgtggtaa acacaaaaaa tgacagcttt gtttgcttca aaaaaaataa tcaaaaccaa      7980
     tgctacgcca cacacacagt cacaaagtta atgattacta ttgcaccaat acatagccaa      8040
     tgcaataaat cgagtgcctc cccgtgtcac c                                     8071
//
ID   Kolobok-2_AP repbase;    DNA;    INV; 4046 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.08, Created)
DT   27-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Autonomous Kolobok transoson - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4046
RA   Kapitonov V.V. and Jurka J.;
RT   "Canonical Kolobok transposons from metazoans.";
RL   Repbase Reports 14(8), 2097-2097 (2014).
XX
DR   [1] (Consensus)
XX
CC   This family is a member of the canonical Kol0 group of Kolobok
CC   transposons. The consensus codes for the Kolobok TPase and KolX
CC   proteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           3386..2946
FT                 /product="Kolobok-2_AP_2p"
FT                 /note="Kolx."
FT                 /translation="MTSAYLFEPEYENDDEIDTFLEYSGIQYVNFENRSGT
FT                 RNWCKCGKCVVMTTNQESICCQEYENIKHLVGNYMCVTQNNLFEKLVLDRD
FT                 VLNITRHQLTLKSKNKTKRQLLCVNEPENKLWRYLAYKNFTSWINAWTTIG
FT                 KGNRVVIP"
FT   CDS           join(709..1114,1188..2046,2105..2264,2314..2506,
FT                 2573..2718)
FT                 /product="Kolobok-2_AP_1p"
FT                 /note="TPase."
FT                 /translation="MPMCSVFGCNERNGHRFPNREKSPKRFAIWTNFCKRK
FT                 SFNPGQNAGICNKHFLESDFDESSVIKKKLMPNSKEPFLKNNAVPSVNVEL
FT                 LVRNKKKPRTSMNSTDVSQTNYNILEPIILLDLENEVENKICEIGIQFMNI
FT                 SGEIPFEHLNNSFESDVSQNEDNEQNESNCSFDDNECFIVYWSCLCELFKT
FT                 CRSCKYPIIKHKLVCKGASLSVFTTCEMGHTLNWSSQPQYGKLPVGNVLIT
FT                 SSSMMSGINFNSFIEFCSTLNLNMLTRTIYDRHINRYFTPVVNYVWYKKQN
FT                 EMLEKIRNSSDVIWLAGDGQFDSPGFCAKFVTYSIMDLHTGNIIDFSIIQK
FT                 GMVKGGFEKSACNYVLNDLIENKKINIHLFLTDRHVGIRSMMKKEFPDISH
FT                 EFDVWHLSKSLIKKFKTVDVNKYPEVIDTVLIAKFTSILHHIKNEHQWQTE
FT                 EGKMTCEHEEIPEETQRKKKWIHSQSESYNHASNYVHTGRLESYHNLRLKY
FT                 VPKRIHFPYNGMVLRSKLAIMDHNSNINKERIGDKAQFSKAMGIEKFCTNK
FT                 NTNDINSIPRPANEVVVPYHIAQIPKPSIEEMKKNKFSRFS"
XX
SQ   Sequence 4046 BP; 1465 A; 624 C; 628 G; 1329 T; 0 other;
     aggagcacac aacacaaaaa aaaaattatt taaattattt ttaaatgtta aattattgta        60
     actatggcta tatgaaatga tttggtgaaa atccgatgta aaaaaaatta ttactttaag       120
     agatattaag aaatgtaaaa tagccgcgtg acgtcattgg gccctactca tcgtaattgc       180
     ctatcttata cgtgtaaaag ttcctcgctt ctcacaacga tttaccctcc taaacatttt       240
     atttttgaaa tttaatttac gtataaatgt gtggttttat gtgtttaaga cgacgcaaga       300
     atcagaattt ctatatgacg tttagttttt tttaaatatt aaaaatctta aaagagacat       360
     ttggttaaac ggcacgtcat ggcggtcggc ggtcgaaaca accaccgacc gccgaccgcc       420
     gaccgccact atctgatcta attctacgta ttttacacac tacacgcaca cacacacaca       480
     catacacaca cacacatacg tatatatgta tatacaaata tataaatatt tacaactata       540
     tttataatta attattatta cattatattt ttaaattttg gctgaacgta tgtcgtaatt       600
     accaacgttc agtacctact tctgcagtct gtgttcggca gttcggccaa attgttgttt       660
     agtttttttt ttgtgtaaat aagtgttgct cataaaattg ttacaaaaat gccgatgtgt       720
     agtgtttttg ggtgcaatga acggaatgga catcgttttc caaatagaga aaagtcacct       780
     aaaagatttg caatttggac aaatttttgc aaaagaaaat catttaatcc aggacaaaat       840
     gctggaatat gcaataaaca ttttttggaa tcagattttg atgaatcatc tgtaataaaa       900
     aaaaaactta tgccaaattc gaaggaaccg tttttaaaaa ataacgctgt tccatcagta       960
     aatgttgaac tattggttcg aaacaaaaaa aaacctcgta cgtcgatgaa ctccactgac      1020
     gtaagccaga ccaactataa tatactagaa cctattattc ttctagatct agaaaatgaa      1080
     gttgaaaata aaatatgtga aattggtatt caatgtgaat taggcaatga aactataaaa      1140
     aataatgaca gccgaaactt gtatcaactt gtatgatggt caaacagtta tgaatatctc      1200
     aggagaaata ccgtttgaac atttgaataa ttcttttgaa agcgatgttt cacagaacga      1260
     agataatgaa caaaatgaat caaactgtag ttttgacgat aatgaatgtt ttattgttta      1320
     ttggagctgc ctatgtgaat tatttaaaac atgtcgatct tgtaagtacc caattattaa      1380
     acacaaactt gtttgtaaag gtgcttcact aagtgttttt acaacatgcg aaatgggcca      1440
     cactttgaat tggagttctc aaccgcaata tggaaaactt cctgttggta atgtattaat      1500
     aacatcttct tcaatgatgt caggcatcaa ttttaattca tttattgaat tttgtagtac      1560
     tttgaatcta aatatgttaa cgcgtaccat atatgataga catataaatc gttattttac      1620
     acctgtagtt aattatgtct ggtacaaaaa acaaaacgaa atgttagaaa aaatacgtaa      1680
     ttccagtgat gtgatttggc tagccggtga tggacaattt gattcgcccg gattttgcgc      1740
     taaatttgtc acatactcga tcatggacct acacacgggg aacattattg acttttccat      1800
     tattcagaag ggtatggtga aaggtggttt tgaaaaatct gcatgcaatt atgttttaaa      1860
     cgacttaatt gaaaataaga aaataaatat acatttgttt cttactgata gacatgtggg      1920
     cataaggtcc atgatgaaaa aagaatttcc cgacatatca cacgagtttg atgtttggca      1980
     tttgtcaaaa agtctcataa aaaaatttaa aactgttgat gtaaacaaat atccagaagt      2040
     aatcgagtgg aaaaaagtat aataatcata tgtggtactc agctcaaacc tgtaatggtg      2100
     atagtacggt attgatcgcc aaatttactt caattttaca tcatattaaa aatgagcacc      2160
     aatggcaaac tgaggaagga aaaatgactt gtgaacatga ggaaataccg gaagaaacac      2220
     aaagaaaaaa aaaatggatt cactcacaat cagaatcgta taatgtttta aaaaaaaata      2280
     ttattagata aaagattttt aaacgacttg cagcatgcta gtaattatgt acatactgga      2340
     aggttagagt catatcataa tttgagacta aaatatgtac caaaacgtat acattttcca      2400
     tacaacggca tggtactgag gtcaaagtta gctattatgg accacaactc taacataaat      2460
     aaagaacgaa ttggcgataa ggcacagttt tcaaaagcaa tgggaagttg agttctgaaa      2520
     aataaatatg cgaaatctac taatatgtgg aaatatgata taatggaaat agtagaaaaa      2580
     ttttgcacta ataaaaatac caacgatata aattcaattc caagaccagc aaatgaagta      2640
     gtagtaccat atcatatagc acaaattcca aaaccatcaa tagaagaaat gaaaaaaaat      2700
     aagttttctc gattttcaca agtacctaaa atttaaaaat acataagttc aatttaaata      2760
     attgcaaaaa aaaaatatgt ataaataaat gtttattttg ttcaatactt ttatcaaact      2820
     acataaatag taaaaaatta ttacattttg ttttcttaat caggattttt tccactcgga      2880
     cggaatccta tataatcgcc gtttttctcc ggaaacgtac ttctgatctt gacaattgaa      2940
     catcatggaa tcactactcg gttgcctttt ccaattgttg tccatgcgtt tatccaagat      3000
     gtaaaatttt tgtaagctaa atacctccat aatttatttt caggttcatt tacacatagc      3060
     agttgtcttt tagttttatt tttagatttt aaagttaatt gatgacgtgt tatatttagt      3120
     acatccctgt ccaaaactaa tttttcaaat aaattgttct gtgttacaca catataatta      3180
     ccgactaaat gttttatatt ctcatattct tgacagcata tggactcttg atttgttgtc      3240
     ataactacac attttccaca tttacaccaa ttacgagttc cacttcgatt ttcgaaattc      3300
     acatattgta taccgctata ttccaaaaag gtatcaattt catcgtcatt ttcatattcg      3360
     ggttcaaata aataagcact agtcatgata agattttaat ttagaaatta cacgagtgac      3420
     tacgtggctg aactgccgaa cacagactga acgttggtac ctaatcacgc cttacgtaca      3480
     accaaaattt aaaaatataa tataataata attaattata aattcagttg taaatattta      3540
     taaatttgta tatatatata catatatgtg tgtgtgtgtg tgtgtgtagt gcgtaaaata      3600
     cctagaatta gataagatag tggtggtcgg cggtcggcgg tcggtggttg ttcgaacgcc      3660
     gttcgccatg ccgtgccgtt taacaaaata gctcttttaa gatttttaat atttaaaaaa      3720
     aactaaacgt tatattgaaa ttctgatact tgcatcgtct taaacacata aaaccacaca      3780
     tttctgcgta aactaaattt caagaataac atttttaggt tggtaaatcg tcgtgtgaaa      3840
     cgaacaactt ttacatgtat aagataggcg attccggtga gtaaggccca atgacgtcac      3900
     gcgtctattc tatatttctt aatatctctt aaagtaatta ttttttttgc atcagatttt      3960
     caccaaatca tatcacatag ccatagctac aataatttaa tatttaaaaa aaaattaaag      4020
     attttttttt tgtgttatgt gctcct                                           4046
//
ID   Kolobok-2_LMi repbase;    DNA;    INV; 1790 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1790
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2992-2992 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(430..675,599..1348)
FT                 /product="Kolobok-2_LMi_1p"
FT                 /translation="MTKPKGCSRNVIRKSKQDRYESDRGVRYTEYLGDGDS
FT                 KAFSAVCQSKPYDVPVIKLECVGHVKKRMGPPSYTQEQTWWNKAFNVWGML
FT                 KRGWAPLRTLKSKLGGTKLSDGKSMKYRLTDKIINELQEYYGNAIRKNSGD
FT                 LEAMKKAVWATFFHRISTDEKPTHFLCPPLPDTWCKFRKAQAAGNLNTFTH
FT                 KHSIPESIMDQIKPIYRDLAHPDLLRKCLHGKTQNVNEAFNNIVWTRIPKN
FT                 VFVGYRTLQLGVSDAVITWNNGNIARLKVLEQLGISPGQNTVTILRELDSL
FT                 RIAKSDFAASLMSKESRSRKRKQANEPKDNEDPDYGAGCF"
XX
SQ   Sequence 1790 BP; 573 A; 324 C; 359 G; 532 T; 2 other;
     ggtaagacgg taggctgaaa tttttcaaaa aatcaatttt cagttttttg cataattaga        60
     tactatgttc tttgtgaaca tttatatgta ttttttattc ctgtccacca gttagaactg       120
     cattttttta aaaatwttat gacatctgtc actctgtaat aatttacgcc ccttttcgta       180
     aaaaggatta tacctccggc acttttacag ttagagagtt agtgtttgtt tgtgttttgt       240
     acagaaatgt acggttcata tgttggttaa cctgctagag cgcatttcga tagtcaaatg       300
     tctgcaggcg cgcttgtaaa caaaagttct cttkgaaaaa cgtgtctcgt tggttctatt       360
     gtttgtgaat acgaagtttc ttgaaagttt tagtgcggtg tatagtaatc tgtgcgcggc       420
     gtttctataa tgactaaacc aaaaggttgt tcaagaaacg taatcaggaa atcaaaacaa       480
     gatagatatg agtctgacag aggtgtacgg tatactgaat acctaggcga tggagatagc       540
     aaagcattca gtgctgtctg ccagagtaaa ccttatgatg ttccagtaat aaaattagaa       600
     tgtgtggggc atgttaaaaa gaggatgggc cccccttcgt acactcaaga gcaaacttgg       660
     tggaacaaag ctttctgatg gcaagtctat gaagtatagg ttgacagata agattatcaa       720
     tgagttgcag gaatattatg ggaatgccat taggaagaat tctggagatc tggaggcaat       780
     gaagaaagca gtgtgggcca ctttcttcca ccgtatatcc actgacgaga agccaacaca       840
     ttttctatgt ccgccactcc ctgatacgtg gtgcaagttt aggaaggcac aggcagctgg       900
     taacctcaac acattcacac acaagcactc tatccctgaa tcaattatgg atcaaatcaa       960
     accaatctac agagaccttg cccaccctga tctactgagg aagtgcttgc atggaaaaac      1020
     tcaaaacgta aatgaggcct tcaacaacat cgtgtggacc cgcatcccta aaaatgtgtt      1080
     tgttggttac agaactttac aactaggagt gtcagatgct gtgataacgt ggaacaatgg      1140
     aaacattgcc agactaaaag ttttagaaca gttaggcata tcacccggac agaatactgt      1200
     aactattcta agagaacttg acagcttgcg tattgccaag tcagattttg ctgcttctct      1260
     aatgtctaaa gagtcaagaa gcaggaaaag gaaacaggca aatgaaccca aagataatga      1320
     ggaccctgat tatggtgcag gctgcttcta accacttctt ggggacagat ctgtaagttt      1380
     ttcctagaat aaacatgttg taaaactttg tctcattttc tcaaaactat aaattctgaa      1440
     acatttgccc cgttttctca gaaactatca gagaaacttt aatgaaaatt tcacagattg      1500
     taaacaacac tgcattacag ctgtggaacc gcagtcatgt tgattgcacc agtaattctg      1560
     ctgtaataaa aatatttatg acttttttca caaaaaaatt aatgcacggc aattaaatta      1620
     ataagtatat tataaattac aataccacaa cgatttcggt tcagtgagtt gcacaaagat      1680
     catttaattt tcagtgaaaa tttcagacaa atctgttcag tagtttctga gaaaatgggg      1740
     catgaatttg cttaatttaa cattgtcggt atagggccta ccgtctcacc                 1790
//
ID   Kolobok-3_AP repbase;    DNA;    INV; 4309 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.08, Created)
DT   27-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Autonomous Kolobok transoson - conceptual consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4309
RA   Kapitonov V.V. and Jurka J.;
RT   "Canonical Kolobok transposons from metazoans.";
RL   Repbase Reports 14(8), 2099-2099 (2014).
XX
DR   [1] (Consensus)
XX
CC   This family is a member of the canonical Kol0 group of Kolobok
CC   transposons. The consensus codes for the Kolobok TPase and KolX
CC   proteins (unusual order of these two genes).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1287..864,764..673)
FT                 /product="Kolobok-3_AP_1p"
FT                 /note="Kolx."
FT                 /translation="MSIIQYNFEPLVTDVDNYDYLENEESVVSYNDRSKLA
FT                 VTDWCSCGKCEKQINYRECVCCFELVNIFKMCTNNECITKNATFSKIILDE
FT                 DILKITRQYKISKTKNKTKKRSLQSATMENKAWRYICYKQFTLWVNSWIPI
FT                 GRGNRVVIPSCVVTKIRERYPEENGLYIGFQNP"
FT   CDS           join(1647..1950,2051..2917,2967..3101,3216..3763)
FT                 /product="Kolobok-3_AP_2p"
FT                 /note="TPase."
FT                 /translation="MTLCSVFGCASNNDRKRKKVGNDNNLHFYTFPKRDKS
FT                 PLRHRKWEHFCKRKNFKSSAGSVICSKHFLPLDFNQSDVLKKQLMPESKCI
FT                 VRLNPDDVPSIQTVHRRKKMVTKSSSFEEINDVSAIEKPVINNKIQKTSEI
FT                 GIQCELGNENLIRIINYEKKNDLSFEIESESEDSENTSDDETSESQKNYNT
FT                 CKTKNVKSSINLNKDECFIVFWECLSKLFNNCNVCGSKILSLNNFIRGSCL
FT                 CVTTVCEKNHTFQWYSQKKIKKRAIGNICIGSALMLSGILFAQMVEFCQVL
FT                 NLRFFSRTSYDKIIKKYIGPVVYNVWTYHKQDNLNNLKTLPNIWLAGDGQY
FT                 DSPGFCAKYCIYSVMDLNSSKIIDFQLVQKGMVTGDLERAACEMLINCIRY
FT                 FFRTQHPEINHEFDIWHLSKSLMKRMKTLEKKYPDVYLWKSNENGITKQCE
FT                 HEKLTDEQVKNKLWIHMKTSSHDALKKILTAKDFIKDLTQAKHFVHTGKLE
FT                 SYHNVRLKYMPKRIHLQFNGMFVRSIFAILDHNNNTEKSLLGEKVVFSKPL
FT                 GRFTIKNSYNKTQNNWKRDIMSTIIEEAEKEISPQPFDVQKECNTDIPKNI
FT                 YRTPRPPYEELKSKRYSRFT"
XX
SQ   Sequence 4309 BP; 1626 A; 624 C; 621 G; 1438 T; 0 other;
     aggactacgc aactaaaaaa aacctatttt ttttttatta ttttaatgta tagggctttg        60
     aaaaagaata attttggtgg tcttaaaatt gttgtcggac aattggttcc gtgtttaaat       120
     ataagtcgcg ttttacgcgt gacgtcataa aatcacaccg tccgacgggt cgtatataat       180
     atacacgctc ggaatttatt tcgtgcgatt aaaataatta tagaaaaaaa ttgattaagg       240
     gtacaagtta ttaaagtaca tttataaaaa ggttatacac ttctttagat ggtcatatta       300
     tttttattgt gttgaaattt gtttcagggt agttcataga aaagacaaaa tatataaaat       360
     atcaaacata aaatttatga cacaataaaa tttacatagg tatatttaat aatattataa       420
     tccgtcattt aatgtattag caaatgtgtt tttataatta ataataaaag aactaaaata       480
     aatgtgtaaa aaaacctcaa aataaaatat taccattcaa taaaggtgag taccaacaca       540
     aaattgaata gaagtgtaat agtaggtttt aaacaactat aaaactaaca acttacatat       600
     tattatttta tgcactatat tatgaattat aatgtttaaa ttattataat atgaaataga       660
     ttacatgaat cacgggtttt gaaaaccaat atataatccg ttttcttcag gataacgttc       720
     acgaattttt gtgaccacgc atgatggaat aacaactcta ttccctatag tataaaacaa       780
     acacaataaa caataaatta ctatattttt ttacctacct atgattttat cactgtaact       840
     ctatcgaaaa taaatttact tacctcttcc aattggtatc cacgaattaa cccaaagtgt       900
     aaactgtttg tagcaaatat atcgccatgc tttattttcc atagtagctg attgtaaact       960
     tctttttttt gttttattct ttgtttttga aatcttgtat tgtctggtaa tttttaaaat      1020
     gtcttcatct aatataattt ttgaaaatgt ggcatttttt gttatacact cattgtttgt      1080
     gcacatttta aaaatattca caagttcaaa acaacaaaca cattcacgat aatttatttg      1140
     tttttcacat tttccacacg agcaccaatc tgttacagct aatttagatc tatcgttgta      1200
     actaacaact gattcttcgt tttccaaata atcatagtta tcaacatcgg taaccaaagg      1260
     ctcaaaattg tactgaatta ttgacataat aattgtatta taaaattcaa aataaaacaa      1320
     aaatcgttta ctgttttaga ctctagtact gcagttgaat cagtcagcgc acactgcagt      1380
     aggtactgta aattgtaata gtcgaccata tgaatttgtg tacgtaatca ccaatgaagt      1440
     atattattta tagcttttat aaatagctta tattttgtat aatataaatg aattgataaa      1500
     aataaacggg ctattcacac tacgcacaaa tacaaattat tcctcagaca gtcagacctc      1560
     agtcgataat cgacagtgtg ttgtgtgtac cgtgaagtat caaagtatcc gcgtgttttc      1620
     tggtttgttt atataatcaa acaaatatga ctttgtgctc ggtatttggt tgtgcgtcga      1680
     ataacgatcg taaacgtaaa aaagttggta atgataataa tttgcatttt tacacttttc      1740
     caaaacgcga taaatcacca ttacgacatc gaaaatggga gcatttttgt aaaagaaaaa      1800
     attttaagtc tagtgctggg tcggttattt gttctaaaca ttttcttccg cttgatttta      1860
     atcaatcaga tgttttaaaa aaacaactta tgccagaatc caagtgcatt gtaagattaa      1920
     atcccgacga tgtacctagt attcaaactg gtataagcaa ttcaaaaata tctataaatc      1980
     ccaggcaaga attactgcat attatgaaaa aacgccaaat agaaataatt gatgatttaa      2040
     taaaaactag tacaccgaag aaaaaaaatg gtaacaaagt cgtcgtcttt tgaagaaatt      2100
     aacgatgttt cagctattga gaagccagtc atcaataata aaattcaaaa aacaagtgaa      2160
     ataggaatac agtgtgaatt gggaaacgaa aatttgatca gaataattaa ttatgaaaaa      2220
     aaaaatgact tatcgtttga aatagaatcg gaatccgagg acagcgaaaa taccagtgat      2280
     gacgagactt cagaatcgca aaaaaattat aatacttgta agacaaaaaa tgttaaatca      2340
     tcaataaatt taaataagga tgagtgtttt atcgtttttt gggaatgcct atcaaagctt      2400
     tttaataatt gtaatgtgtg tgggtcaaaa atattatcat taaacaattt tattcgaggt      2460
     tcttgtctgt gtgtaactac tgtatgtgaa aaaaatcata cgtttcagtg gtactcacaa      2520
     aaaaaaatta aaaaaagagc aattggtaat atatgcattg gatcggcact aatgttatca      2580
     ggtatattat ttgcgcaaat ggttgaattt tgtcaagtat tgaatctacg ttttttctct      2640
     agaacatctt atgacaaaat cataaaaaaa tatattggac ctgtggttta taatgtttgg      2700
     acttatcaca aacaagataa tttaaataat ttaaaaacat tacccaacat ctggcttgct      2760
     ggtgatggcc aatacgattc gccgggcttt tgcgcaaaat attgcattta ttcggtcatg      2820
     gatttaaata gttctaaaat aattgatttt caattagtgc aaaaagggat ggtcacgggt      2880
     gacctcgaaa gagccgcatg cgaaatgctg attaattgta gaatatgatt gtaagattca      2940
     actgttttta tctgaccgtc atagaggtat tcgatatttt ttccggaccc agcaccccga      3000
     aataaatcat gagtttgaca tatggcacct gtcaaaaagt ctaatgaaaa gaatgaagac      3060
     attagaaaaa aaatatcccg atgtatattt atggaaatca agtattaata atcacttatg      3120
     gtggtcagca cagacgtgcg aagaaaatgc tgatttatta gtagataaat ttctttctat      3180
     tttatatcat attgctaata ttcatgaatg aacagacgaa aacggtataa caaaacaatg      3240
     cgaacatgaa aaactgacgg acgaacaagt aaaaaataag ctttggatac atatgaaaac      3300
     tagttcccat gatgctttaa aaaaaatttt aactgcgaag gacttcatta aagatttgac      3360
     acaagcaaaa cattttgtgc acaccggaaa attggaatcc tatcacaacg tgaggctcaa      3420
     gtatatgcct aaacgtatcc atttacagtt caatggtatg ttcgtacgat ctatattcgc      3480
     aatactcgac cataacaata atactgaaaa atcattatta ggagaaaaag ttgtattttc      3540
     taaaccacta ggacgattta caataaaaaa ttcttacaat aaaactcaaa ataactggaa      3600
     acgtgatata atgtcaacaa ttatcgaaga agctgaaaaa gaaatttcac cacagccgtt      3660
     tgatgtacaa aaagaatgta ataccgacat cccaaaaaat atttatcgaa cacctcgccc      3720
     tccctatgaa gaattaaaat caaaaagata ttcaagattt acctaaatat ataatataac      3780
     taggtaatga taattataat aattcaatta cgtataatat attatgtatt tttgtttgaa      3840
     gtaatatatt ttattttgag gtttttttac acatttattt tagttcttat attattaatt      3900
     ataataacac attcaataac ggattataat attattaaat atacctatgt aaattttatt      3960
     tgtttgtctt tcctatgaac taccctgaaa caaatttcaa cacaataaaa ataatatgac      4020
     catctaaaga agtgtataac ctttttataa atgtacttta ataacttgta cccttaatca      4080
     atttttttct ataattattt taatcgcacg aaataaattc cgagcgtgta tattatatac      4140
     gacccgtcgg acggtgtgat tttatgacgt cacgcgtaaa acgcgactta tatttaaaca      4200
     cggaaccaat tgtccgacaa caattttaag accaccaaaa ttattctttt tcaaagccct      4260
     atacattaac ataataaaaa aaaataggtt tttttagttg tatagtcct                  4309
//
ID   Kolobok-3_LMi repbase;    DNA;    INV; 2553 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2553
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2993-2993 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(383..724,655..1287,1248..1403,1428..1715)
FT                 /product="Kolobok-3_LMi_1p"
FT                 /translation="MTPKRSVFKKRGFHGNRFSNKGKHCVQHVACEVTDNE
FT                 IQANSSVSRKTPISASKIKIKRCDTQFSQNESDVNDRLGYILIDLHILTRV
FT                 LGECVCCIKYVEGQLVYMKTVRYQMDMCVLYKICGGPVSLHEDSEVSNGLA
FT                 RKLIINCASCKYTHSFWNSDKCKDNYFEVNVRWFYGLRAIGKGHTAAETMC
FT                 AVMNMPRPPCKIDKYAGFIGAAVESVACESMKGAANEAVEINDGMTDIPVA
FT                 FDGTWQKRGYSSKNSVATVTSVDTGKVIDFQILTKHCYKCKSGNEEGHICD
FT                 RNYEGTSGGMEASAAIEIFSRSVNERECVTPSSSLCERKGVCYTKFLGDGD
FT                 SKAYNSVVAAQPYGEKIITNWNVLVMSRRGWAPGETRNFLMVKHKGRLTDK
FT                 MIDELQQYYGMAIRNNTEDLLKMKQAVWATFFHSCQLMKNQYTTFALLDLI
FT                 HGAITAMPSTQTVHTAINIPSQQQSWVS"
XX
SQ   Sequence 2553 BP; 861 A; 385 C; 568 G; 739 T; 0 other;
     gggaagttag aaaggaaatt tttttcacat tttcggagtt ttatctcatt gtaaaatttg        60
     caattttccg aataaaatga tgtatatatc acttataaac tcacatggga agtttttttt       120
     tttttttttt taaatataat ctacaccggt tgaaaatgtt aaaattttta cgtgcattac       180
     ttcaagatct aataaaatcg gaatttttta tatagaaggc tgtggattgc tgtgttataa       240
     aggttaaatt acgtgtttgt attggtagca ctgtcaaaaa cagtatcgta tcgtttcata       300
     gtataaacac gcgttgtatg tcgaagtgct aacgtttttc cgaggaaaag tgacgaatag       360
     attggtaaat ctctcaaaag aaatgacgcc aaaacgaagt gtttttaaga aacgtgggtt       420
     tcatggtaat agattttcga ataaagggaa acattgtgtt caacatgtgg cgtgtgaagt       480
     tacagacaat gaaatacagg caaactcgtc agtatctaga aaaacaccca ttagtgcttc       540
     gaagatcaaa ataaaacgtt gtgatacaca gttttctcaa aacgaaagtg atgtaaatga       600
     taggttaggt tatattctga tagatttaca catcctaaca agggtgttag gtgaatgtgt       660
     gtgttgtata aaatatgtgg agggccagtt agtttacatg aagacagtga ggtatcaaat       720
     ggactagcca ggaaacttat cattaattgt gccagttgta aatatactca ttcattttgg       780
     aattctgata agtgtaaaga taattatttt gaagtaaatg ttaggtggtt ttatggattg       840
     agagctattg gcaaaggaca cactgcagca gaaacaatgt gtgccgtgat gaatatgcca       900
     cgcccacctt gtaaaatcga caagtatgca ggatttattg gagctgctgt ggaatctgtt       960
     gcatgtgagt caatgaaggg tgctgcaaac gaagctgttg aaataaatga tggtatgact      1020
     gacataccag tagcttttga tggcacttgg cagaagcgcg gctacagttc taagaattct      1080
     gttgctacgg tgaccagtgt ggatactgga aaggtaatag atttccagat tttaaccaaa      1140
     cattgttata agtgtaaatc agggaatgaa gaagggcata tctgtgacag aaattatgaa      1200
     ggaacaagtg gtggtatgga ggcctctgca gctattgaaa tttttagtcg ctctgtgaac      1260
     gaaagggagt gtgttacacc aagttcttag gtgatggaga ctcaaaagca tataacagtg      1320
     tagtagccgc tcagccttat ggtgagaaga ttatcacaaa ctggaatgtg ttggtcatgt      1380
     ccagaagagg atgggcacca ggttgaggaa gttgaaacaa agtttgagag acaagaaact      1440
     ttctgatggt aaaacataag ggcaggctga cagacaaaat gattgatgaa ctacagcagt      1500
     attatgggat ggccattaga aataatactg aggatttgtt gaaaatgaag caggcagtat      1560
     gggctacctt cttccacagc tgtcaactga tgaaaaacca gtacacaacc tttgccctcc      1620
     tggacctaat tcatggtgca attaccgcaa tgcccagtac tcaaacagtt catacagcca      1680
     taaacattcc atcccagcag cagtcatggg tatcataaaa cctatttaca gagacctggc      1740
     aaatcctgaa ttactgaaga agtgtctgca tggtcagact caaaatccca atgagtcgtt      1800
     caataatctt atatggactc gcttaacaaa aaatgtttct gttggaatga agacactaaa      1860
     gtgggggggg ggttcagtga tgctgttatt gcttttaatg atggcaacat tggtagggtg      1920
     aaagtgctac agcatatggg aattaatcct ggagcaaact gcatcagaga acttgaacgg      1980
     atggacaagg ttcgcattga taaagcagag tatgcagcac agttggccac taaggagtcc      2040
     agaaagaaga aaagaagaaa cttggaaaaa gatcaagagg atgatataca gtatggtgca      2100
     gggtgcttct gagtgactaa aaataaaaaa ttaagcatat attgagtgag ttacagtctt      2160
     ttgaaacttt agaagccgtt cctgaaaatt tacattttct gttgcatttt tccctaaatc      2220
     tcagaaacca cttcgagtag agtattcaaa ttttcaggga gtaataacat acatatcctg      2280
     agtctactga actaaaagaa gaacataatg ttatgtataa ttaaaattat ttaggataat      2340
     gtacaaaaaa gtacacaaaa ttttaaccgt gtaattaaaa attgtatttc cgaaagcagt      2400
     ggctgaaatg caattattgt agttcagtag actcagaaca tacagtttaa tgtcctgtaa      2460
     aagtttcatg tcaatggcta cagtggttcc tgaaatacag ggaagccaag tcactaaatt      2520
     taacattgtc gggatagggc gttccaactc ccc                                   2553
//
ID   Kolobok-4N1_LMi repbase;    DNA;    INV; 1562 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-4N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1562
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2994-2994 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1562 BP; 509 A; 256 C; 305 G; 489 T; 3 other;
     ggtaacttgc tcgtgaatcm tcttaaaaaa atcgatattt tgtttttcat cttaaattaa        60
     agtttagact tttctgaaca caatggtggt taaaacattt aaattggact acgggaagtt       120
     gtttaaatat caattcaaag atcactctgt gtgcagccat gccckttttc ctgctactct       180
     cacacgtcaa ttgttgtcat tagacttctc tcccaaaaac ataagaacaa ttgtttttca       240
     agttggcagc gctgttggaa gacacatttc gattctctta tgttttctct tgtatatctt       300
     tggttatcga gcgttgtttt gtttattaac gtttccgtag tttgatttag tgctaccttg       360
     actttctcgg aagttgttat gcctgctaaa aaggttttgg tttgggctac cttcttccat       420
     aaagcctcta ctgatgacaa tccacagcat gcgctttgtg acactggtgt aggctcatgg       480
     tgtgggtaca aaaaagcact cgaaaatggt caagtttatg tacaccacca ctccctaccg       540
     tttgcagtat tggaggcaat taagcccata tacagggacc taagtgacaa aaaactcttg       600
     tcacgatgct tacatgggaa aacacaaaac gtgaacgaat gcttcaacca tttgatatgg       660
     gaacgcctgc caaaaacagt gtttgttggg ttcaacacca tgagattagg tgtgttagac       720
     gctgtaattt gttttaatga tggggcagta agcagatgtg aagttttaga gttgctagga       780
     atatcttctg ggttcaatat gaaacaatca ctggtggcaa ctgataagtt gagagtggcc       840
     gaagctgaaa aggtggttct tgaggcaact aaagaagcca ggacagcaag gagaagcaag       900
     aaaagaaaga gagaagatga ggaacatata aaccaagaag aatatggacc tggaatgcat       960
     taggaccaac acaggtgagt tatagataaa atatatactt tacatagaat ttcccgacaa      1020
     atacattttc tgacatgttt attttatgca aaaataaact atttgagcta gagatctgaa      1080
     attttttgga atgtttsagg atactatttg gagaaaagta gactacagac actaacctac      1140
     tatcaacagg tgcaaaaata tctactgatt aattataaaa atgtagcatt tgttttgaac      1200
     atcaaatgta aatatttcta gaattaaaac ttgtgaatca aattacataa ttgtagtcta      1260
     ctttctagat acacatgttc cttatatgta cctaaagttt caagtgtcta agtaagacgg      1320
     ttagtcagtg catagaatcg aagtatgaac cggcaaatca tttacaggcc ttcacaaaaa      1380
     aaaattctaa aaagttcaat atgtgaatta gtgaaactac ctgtatatca aattgttcag      1440
     aaagagagat gaaacattgt cctgcaattt tattctatta agagttaggg gttttaagtt      1500
     acagctgtgt aaactttatg aaaatttgtc gcatttttcc aggcgttcac aggcaagtta      1560
     cc                                                                     1562
//
ID   Kolobok-4_LMi repbase;    DNA;    INV; 2702 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2702
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2995-2995 (2014).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..2094
FT                 /product="Kolobok-4_LMi_1p"
FT                 /translation="MPPKKCFGRGKRKFYGNRFTSLGSRDCVITSTNQQDV
FT                 MSTPPSASRQKLKYLSDVSTNDDQNTLTDCVSIIAELSALCSLLKNAVVCA
FT                 LCGKGGIKIEEDFEGRRGVASKLQVVCDFCGVTKTGYSSGLCKGRAYNTNI
FT                 RLAYGMRCIGKGRKAAQTFCAIMNLPPPTRFEKYTQLLLESLGQVSAVSMK
FT                 KAVEETVLYNEGDTDIAAAFDGTWQKRGHLSLNGVVTATSLENGKVIDIEC
FT                 MTKYCHGCKVNKQDHVCVQNFSGYSGGMXSEGVLRIFQRSEENYGVRYVKY
FT                 LGDGDSKGFGNVLENMPYGRTVKIEKLECVGHVQKRMGTRLRKLIKDMKGK
FT                 KLSDGKPIGGRGRLTKEEVDKLQLYYGLAIRRNQGDLEAMKKAVWATFFHK
FT                 ASTDDHPQHALCNSGVDTWCGYKKAIENGEIYTHHHSLPFDVLEAIKPIYR
FT                 DLSDNKLLSRCLHGKTQNVNECFNHVIWERLPKTVFVGFKTMRLGVLDAVI
FT                 CFNDGAVSRCEVLELLGVTPGFNMRQALTAIDSLRVAEGDKWVLQATKEAR
FT                 IAKRSKKRKREDEEHTNQEYYAAGGF"
XX
SQ   Sequence 2702 BP; 865 A; 420 C; 609 G; 807 T; 1 other;
     ggtcacttgc cagtgagtca gcttcaaaaa ttcgaatttt tttttaaatc tcaaatcaat        60
     atttagagtt ttgtgaacaa aatggtagtt aaatgaatcg attcggacat cggaaacatg       120
     tttaaaaaca tatttaaata tgtcggtatg cggcaacgac tgtttccgct gctctcggct       180
     gtcaaatggt gtcattatct gccaattaga aaagatacac tgcgtgatcg ttttctgagt       240
     tggcaaccct gttaacacac acattccgat gctcctttgt ttccctttgt atatctttgg       300
     ttttcgagag ttatttgcat tcaaacgtgt gtatgtggtt tagttgttgt tgttgtgtca       360
     ttctcggtaa aagttatgcc tccaaaaaag tgttttggaa ggggaaaacg taagttttat       420
     ggtaatcggt ttacttcgtt aggaagtaga gactgtgtaa ttacatccac aaaccaacag       480
     gatgttatgt cgactccgcc aagtgcctca agacagaagc tcaaatattt gagtgacgtt       540
     tctacaaacg acgatcaaaa tactttaacg gattgtgttt ccattattgc tgaattgagt       600
     gctttatgtt cacttctaaa gaatgctgtt gtgtgtgcgc tttgtggaaa aggtggtatt       660
     aaaattgaag aagattttga aggcaggaga ggtgtcgcaa gtaagttaca agtggtttgt       720
     gatttctgtg gggtaactaa aaccggttat tcttctggat tgtgcaaagg aagggcttat       780
     aacacaaata tcagacttgc atatggaatg aggtgtattg ggaagggtag aaaggcagct       840
     caaacatttt gtgctattat gaatttgccc ccacctacaa gatttgagaa gtacacacag       900
     ttacttcttg aaagtcttgg tcaagtgagt gctgtgtcta tgaagaaagc agtagaagaa       960
     actgtgttat acaatgaagg tgacactgat atagctgcag cctttgatgg gacatggcag      1020
     aagcgtggtc acctatcact gaatggtgtt gtcaccgcaa catcccttga aaatggaaag      1080
     gtgatagata tagaatgtat gacaaagtac tgccatggtt gcaaggtaaa taaacaggat      1140
     catgtatgtg ttcagaattt ttctgggtac agtggtggaa tgsaatcaga gggtgttctc      1200
     agaatctttc aaaggtcgga agagaattat ggtgtacggt atgtgaagta ccttggagat      1260
     ggagactcca aaggatttgg aaatgtgttg gaaaatatgc cttatggaag aactgtgaaa      1320
     attgaaaagt tagagtgtgt tggtcatgtc caaaagagga tgggcacacg tttacgtaag      1380
     ctaataaaag acatgaaggg gaaaaagctt agtgatggca aaccaattgg tggtcggggt      1440
     cgacttacta aggaagaggt ggacaaactg cagctttatt atggtttagc cataagaagg      1500
     aatcaaggtg accttgaggc catgaagaaa gcggtatggg ctaccttctt ccataaagct      1560
     tctactgatg accatccaca gcatgctctc tgcaacagtg gtgtagacac atggtgcgga      1620
     tacaaaaaag ctattgaaaa tggtgagatt tacacacacc atcactccct gccatttgat      1680
     gtactggaag caattaaacc aatatacagg gacctaagtg acaataaact attgtcacgg      1740
     tgcttacatg gaaagacaca aaatgttaat gaatgtttca accatgtgat atgggaacgg      1800
     ttgcctaaaa ctgtgtttgt tggtttcaaa actatgagat taggtgtatt agatgctgtt      1860
     atttgcttta acgatggggc agttagccgg tgtgaagttt tggagttgtt gggagtaact      1920
     cctggcttca atatgagaca agcactaact gcaattgatt ccttgagagt ggccgaaggc      1980
     gacaaatggg ttcttcaggc aactaaagag gccagaatag caaagaggag caagaaaagg      2040
     aagagagaag atgaagaaca cacaaatcaa gaatattatg cagctggagg gttctaagaa      2100
     caacagaggt gtgtaacagt tgaaatgtaa ctttaaattg aatttcccga gaatcacatt      2160
     ttctgacatg ttaattttat gcaaaaaaat aactatttga gttacaggtc tgaaattttt      2220
     tgtgatgttt caggctccca tttggagaaa tgtagactac agacagcagc atactatcac      2280
     caggaggaat aatacagcct tattaattaa aaaaaaatac cttaattttg actgtttaat      2340
     atatgtattt ctagaataaa aactattgat tgaaatcatc tgattgtagt ctacttttta      2400
     gatagtaagg tcatcagtgt gtgcacaaag tttcaagcat ctaagaaaag tagttaataa      2460
     gtctatagac ttcaaacata gacccgcaga aaaaaatttt aattactgac cgatataaat      2520
     gtttataaaa tgaggtgtat atcaaagcta ttcttattag tcttatacca aaatcatcag      2580
     ccttaaagga cgttcattat cctacaattt ctttgtaatt ggagttcaca ttatgtagct      2640
     agagccttac aaactttatg aaaattctta ctgtttttcc acccgttcac tggcaagtta      2700
     cc                                                                     2702
//
ID   Kolobok-5_LMi repbase;    DNA;    INV; 2431 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2431
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2996-2996 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(552..746,938..1162,1105..1395,1450..1887)
FT                 /product="Kolobok-5_LMi_1p"
FT                 /translation="NKLQYLINLHILISALCETVCCRCGGKLKFLKSISTQ
FT                 SGVHLQIMCLNCKSKRLSRLQKCKEWTFQYHSTDPGKKEVSSKEFVCICYQ
FT                 HRQWESVGCRCVTKYCQGCRQAGKSTEKQTKHEMNCRETMMELVEGWRLLL
FT                 QNELQRNYDGTSGGMEVASAVKCPRSQHDRAVRYTSFLGDGDSRSYKAVVE
FT                 SKPYGELSITKLECINHVQKRMGTRLRRLKQQLGSTKLSDGLSTSTDQSNL
FT                 DGMKRAVWAIYFHKLSTDAEPIHNLCSIEWCKYLKAKEEGKVDTFSHKITI
FT                 PNAVVLAMKPVFQDLAQPELLKKCLKGKTQNANESFNNVVWSRIPKNVFVG
FT                 RSVFELGVFDAVLTFNMAILEDYRFWNILEFIKVTTPLKV"
XX
SQ   Sequence 2431 BP; 804 A; 390 C; 508 G; 729 T; 0 other;
     ggggagtcgt accgcccaaa atgacaaaat ttcacatttt tacttttatg caaattatga        60
     aaatatggat gtttatgctt aatttggtgt tggttttatt gaaatattca ttatttacta       120
     ttttaaataa atatttgaaa ataatcatgc actgacattc tgaattttga ttttccatca       180
     tttcgcatat tggcattttt ctctggaact atatagtcta gaaggctgtg gtttcttttt       240
     tttgtagaga actgtccttt cgtaagttgc ctacactagc ggtacttcgc agtaaactct       300
     ttaactgtac atttgtttgt gttacaacaa cgttatccag ttttagtttc tgtgtttcct       360
     gtgatagttt tcatcatgac taaaccaaaa ggagtgttta aaaatatgaa acaaggaaac       420
     aatactacga acaaatatag cgcataaaag agtggttagc gccgaaggac gtgatatttg       480
     gttgtaaata gtgacagtcc tactcctcgc aagaaaaaac tgctgaaata tgtaaaatac       540
     acagacagtg aaacaaactg caatatctta ttaatctcca tatacttatt tcagctttgt       600
     gtgaaacagt gtgttgtcga tgtgggggga aattgaaatt tctgaaaagt atctcaacgc       660
     agtctggtgt gcacttgcaa ataatgtgtt tgaactgtaa aagcaaaaga ctttcaagac       720
     ttcagaagtg taaagaatgg actttttgac actaatggac ttagatgcat aggaaaaggc       780
     cattacctgg taaggttctg tgcttgctga acctccctag tcccctaaaa aatctataaa       840
     tacaactcca tagtaagagt atgtcaagac gtatgctatg gagtcaatga ctacagctgc       900
     agaacaggct gtagcagaaa atgatagttc tgaatagcaa tatcattcga cggatcctgg       960
     caaaaaagag gtttccagta aagaattcgt gtgcatctgt tatcagcatc gacaatggga      1020
     aagtgttgga tgtagatgtg tgaccaagta ctgtcagggt tgtaggcaag caggcaagag      1080
     tactgaaaag caaactaagc atgaaatgaa ttgcagagaa actatgatgg aactagtgga      1140
     gggatggagg ttgcttctgc agtgaaatgt ccacgttccc agcatgaccg tgctgttcgc      1200
     tacacgagtt ttcttgggga tggagactca cgatcgtata aggcagtggt ggagagtaaa      1260
     ccctatggtg aattgtcaat tacaaaacta gagtgcatta atcatgtgca aaagaggatg      1320
     ggcacgagac tacgtagact gaaacagcaa ttgggaagta ccaagttatc tgatggtcta      1380
     agtacgtcga ctgactgata aacaaattga tcagattaca caatattatg gtatggctat      1440
     tagaagtaac agagtaattt agatggtatg aagagagctg tttgggcaat ttatttccac      1500
     aagctgtcta cagatgctga accaatacac aacctgtgtt ccattgaatg gtgtaaatac      1560
     ttgaaggcaa aagaggaggg taaagtagac actttctcgc acaaaattac tataccaaat      1620
     gctgttgtgc ttgccatgaa acctgtgttt caggatcttg cccaaccaga gctgttgaag      1680
     aaatgtctca aaggcaaaac acaaaatgcg aatgaatctt ttaacaatgt tgtatggtca      1740
     aggataccaa aaaatgtgtt tgttggaagg tcagtctttg aacttggtgt ttttgatgct      1800
     gttcttactt ttaatatggc tattctggaa gactacaggt tttggaatat cttggaattc      1860
     ataaaggtta caacaccact aaaagtgtga tggacttgga ccaagagatt gcaacaaaca      1920
     atatgtcaaa agaagccaga tccaagagga ggagcagcac tgggtgagga agatggagga      1980
     ggagatgagg actaccatcc aggaggattc taacattttt ttatgtatca gttggctgta      2040
     tattaaattt ttttctttaa acgcaatttt ctcaaaatga catttttcag tataaatgcc      2100
     ccttttctca gaaacttctg aatctacatc aatgaattat ttaccacata acatagatag      2160
     tacaatgatg ttgtagctct actttggtag tatttactgt aatagttaaa attcaagaaa      2220
     ttaaaattgt gaaaatttac accaaaaatt atgtttaggg aaaaatcata actttttcca      2280
     gctgttattt taagtgattg tagagcaata cagtcacaaa acatgcgaga acatgtgata      2340
     aaaacaccac atttattact caacagttcc tgagaaaacg gggcatttat atagccattt      2400
     aacattgccg agatagggcg gtacgactcc c                                     2431
//
ID   Kolobok-6_LMi repbase;    DNA;    INV; 1579 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1579
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2997-2997 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..986
FT                 /product="Kolobok-6_LMi_1p"
FT                 /translation="VRFRDALFCSSVFSVVSYGSLTQMYSRARLRKLCKDY
FT                 SGKKLSDGKHIGGAGRLTKSEIDSLTQYYGLAIRRNVGDLENMRRAVWATW
FT                 FHRVSTDETPQHGLCPKGEDSWCKYWLSNATGIQYTHKHSLPLAVMEAIKP
FT                 IYRDLANKNLLRKCMHGLSQNANESFNSCIWERIPKTVFVGLTVLKIGVMD
FT                 AIITFNDGAISRINVMKKLNIQTGRNMALALTAIDKRRVTEAETAAEAATK
FT                 ESRIKKRMKRKSMEDKETGQQLDYAAGMF"
XX
SQ   Sequence 1579 BP; 512 A; 255 C; 344 G; 468 T; 0 other;
     ggggacatgc tcgtgaaaat gaccaaaaat ttgcaatttt tatctgtagg aaagagcttt        60
     tcatgctgat ttcaaaaatg tatagtttat gggcattatc attttccgtt cgttctaaaa       120
     ttgaggtaga acgtaatggt gcacaggggc cacgcccatc tgtcagtttg aagtgagtca       180
     gattccgtga tgcattattt tgttcctccg ttttttccgt cgttagttac ggatcgttaa       240
     cacagatgta ttctagagct cggctgagaa aattatgtaa agactacagt ggaaaaaaac       300
     tatcagacgg aaaacacata ggtggtgcag gtcgtcttac aaaaagtgaa attgattctt       360
     tgacacaata ttatggacta gcaataagga gaaatgtagg agatttagag aacatgagac       420
     gagctgtttg ggcaacatgg tttcacagag tgtcaacaga tgaaacccca cagcatggtt       480
     tgtgtccaaa aggggaagat tcatggtgca agtactggtt gagcaatgct acaggcatac       540
     aatataccca caagcattcc ttgccacttg ctgtaatgga ggcaattaag cctatatata       600
     gggatctggc aaataaaaat ctgcttagga aatgtatgca tggtctctcg cagaatgcaa       660
     atgaaagctt caacagttgt atatgggaga gaatacccaa aactgtattt gttgggctga       720
     cagtgctgaa gattggtgta atggatgcaa taataacatt caatgatggt gcaatttcaa       780
     ggatcaatgt tatgaagaaa ttgaacatcc agacgggaag gaatatggct ttggctctaa       840
     ctgctattga taagcgacgg gtaaccgaag cagagacagc tgcagaagct gctaccaagg       900
     agtcaaggat aaagaaaaga atgaagagaa agagtatgga ggataaggaa acaggacaac       960
     aactggatta tgcagctgga atgttctaaa ccaccatagt ggtaagttaa taaatctgta      1020
     aatcttcgtt tgcgaattac cgaaaacttg aattttcatc tttcaggtac acttttctcc      1080
     taaatgactg aagttaaact cacaaaaatt tgtacagata tttagaatga cctcctctac      1140
     ctcccttgcc tattatttct ttgaaaaact tatatcatga tgatgatatc ggtgatattt      1200
     gagctacttt ttaaatattt ttgttgttgt aaaataaatt acttgtcttt ttcacagatc      1260
     agcatcaggg aaggaaattg gaggcataaa acatttatgt gaatgttgtg tgtactgtga      1320
     ctctgttttc caagctgtga ggtcagtagt tccagagaaa atggtaccgc agtgaaatag      1380
     tgttccgttt tttatactat tgtaaatatt tttgtcagta ccaaactata ataaatattc      1440
     caataatttt ttggaaactg ctttgcctaa tgaccctaac tgtttgtaaa aagtttgagc      1500
     tatctctcat ttatagatca gtagcaacgt gagggagaat ataaagctaa aaatgcagcc      1560
     cgttcagggg cgtgtcccc                                                   1579
//
ID   Kolobok-7_LMi repbase;    DNA;    INV; 2450 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2450
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2998-2998 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(423..797,810..1019,952..1230,1212..2030)
FT                 /product="Kolobok-7_LMi_1p"
FT                 /translation="MTKRKGVFKKRQFRGNKFRKLSVQEVMSPGNDVSNCN
FT                 SSTSASSKKLSPFQESYNEFTVSDKGCSNIIINLGILSDVISKFVLCRQCG
FT                 ESQSVKICESASGRKGLAIALDLICTKCSAVLQQMPLLVCLTSWRAWRREN
FT                 IEKLLQIRKCEVRKHETGAGKQGNGCSDLQLHLMEVGKKRTYFSEWSSDCH
FT                 ECRHRWKLAKRGHTSLNGVVTATSVDTGKVLDVEIMSKYCKCCKVNEHKEH
FT                 NCVANFRGTSGGMEVHGVQQIFHRSVETRGVRYIKYLGDGDRHTTMWQAYN
FT                 NVVNSKPYGDAIISKLECVGHVQKRLGTRLRKLTVDMRGKKLEDGKLLTGQ
FT                 GRLTEIENLQVYYGQAIRRNKENLEAMKRDVWAIFFHKSSTDDKPCHALCP
FT                 SGENSWCKYNRAQATGESYSHQHSLPAAVITAIKPIFRDLAHPDLLRKCLH
FT                 GQTQNPNECFNSIIWNRLPKTVFVGMHTMKLGVHDAVITFNCGNIGKCWVL
FT                 KKLGINPGENMITGLQHCDKMRIADADRSASNMAKKARQTSRKVKKKLEDL
FT                 LEAKEGPSYAAGQF"
XX
SQ   Sequence 2450 BP; 802 A; 394 C; 529 G; 725 T; 0 other;
     ggggaccaca ccgtggttca ggtcgaaaaa aaaaatcgat tttcggtttt catcatattt        60
     cgatagatta aggttttatt taagtactct gaaaaggatt ttgctgaaaa atttttttcg       120
     agcatttaaa gagcattttc ctaccacgtg tgtttatgtg tcacgcccac ttttctgtca       180
     cccacttttc tgcatatatt ttagatcttt atatccccta cattgcacgt tagggatttt       240
     tttttactcc cgagtgtgtt ggctatcctt ggaatgcaac ggtcggtatt cttttgtttc       300
     tgctgtttgt aaacaacacg ctttcaaaca cgcggttagt tttgttcaag tgtgattgcg       360
     agtagttgtt atacttacgt ttgcagtgct tgtttacgtg tgttttgttg tgtttattga       420
     agatgacgaa acgtaaaggc gttttcaaga aacgacaatt tagaggaaac aagtttagaa       480
     agctttctgt acaagaggtt atgtcgcctg gcaacgatgt ttctaattgt aattcttcaa       540
     caagtgcatc atcaaagaag ctctcaccat ttcaagagag ttacaacgaa tttactgtaa       600
     gtgacaaggg gtgcagtaac attattataa atttgggaat attatcagat gtaatttcta       660
     aatttgtact atgtagacag tgtggtgagt cacagagtgt gaaaatttgt gagagtgcca       720
     gtgggagaaa aggcctagca attgctttgg atttaatttg cactaaatgc tcagctgttc       780
     ttcaacagat gcccttatga tcatactaat tagtttgcct tacatcctgg agggcatggc       840
     gcagggagaa cattgaaaaa ctgctgcaaa ttagaaaatg tgaggtcaga aagcatgaaa       900
     ctggtgctgg gaagcaggga aatggatgtt cggatttgca gttgcacttg atggaagttg       960
     gcaaaaagag gacatacttc tctgaatgga gtagtgactg ccacgagtgt agacaccggt      1020
     aaagtgttag atgtggagat aatgtctaaa tattgcaaat gttgtaaagt caatgaacat      1080
     aaagaacaca actgtgtggc taattttaga ggaacaagtg gtggtatgga agttcatgga      1140
     gtacaacaaa tatttcatcg ctccgtagaa acaagaggcg tacggtacat caaatatttg      1200
     ggcgatggtg acaggcatac aacaatgtgg tgaactctaa gccatatgga gatgccatta      1260
     ttagcaaatt agaatgtgta ggccatgttc aaaaacgttt gggaacaagg ctgagaaaac      1320
     taactgttga tatgagagga aaaaaattag aagatggaaa attgttgacc ggacagggtc      1380
     ggttaactga aatagaaaac ttgcaggtat actatgggca ggcaattagg agaaataaag      1440
     aaaatctgga ggcaatgaag agagatgttt gggccatatt cttccataag tcctctactg      1500
     atgataagcc atgtcatgca ttgtgtccat caggagaaaa ttcgtggtgc aaatacaata      1560
     gggctcaggc aactggagaa tcttattctc accagcattc tcttcctgct gctgttatta      1620
     cagcaattaa acctattttc agagacttgg ctcatcctga ccttctaagg aaatgtctgc      1680
     atgggcagac acagaaccca aatgaatgtt tcaacagcat aatttggaac cgccttccta      1740
     aaactgtatt tgtaggcatg catacaatga aactaggagt tcatgatgct gttattacat      1800
     tcaattgtgg taatattgga aagtgttggg tactgaaaaa gctgggaatt aatcctggtg      1860
     aaaatatgat cactgggctg caacattgcg ataaaatgag gatagccgat gcagacaggt      1920
     ctgcatctaa tatggccaag aaagcaagac aaacatccag gaaggtgaaa aagaagctgg      1980
     aagacctgct agaggccaaa gaagggccat catatgcagc aggacagttt taattaactg      2040
     taagtaacaa atttcaaaag ttttttcttt aaagtcaatt tcccgcaaac taaaattttc      2100
     agtacatatg ccccattata tcagaaacta tcatagataa atgaatgaaa ttttcagaga      2160
     ctctgcataa cataaaaagc cacctctggt actacattca ttaatattcc cccattagga      2220
     agttcacaaa aaaaattttc tgcagaaaaa cttaatattt tttgttaata aatttaaaaa      2280
     agtattttta aaaactataa aatggataaa gtagatttta gtacagttga ctctattagc      2340
     atcatgtaac atacagtaaa aatattaagg tcctgcatca aatagttttt tcagaaatgg      2400
     gtcaaatact tgcctaaatt aacatggtta gataggcagg gtgtggcccc                 2450
//
ID   Kolobok-8_LMi repbase;    DNA;    INV; 2526 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2526
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2999-2999 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(885..1292,1249..1854,1830..2129,2077..2382)
FT                 /product="Kolobok-8_LMi_1p"
FT                 /translation="MLCGIMNLPKPPTKFGFYNELVGSSAEDIAQATMKKA
FT                 VEEAVTDNGNCRDLTVALDGSWQHRGHKSLNGVVTATSGDSCKVIDVAILS
FT                 KHCRCKGNTKDEHSESCEANFHGTSGAMEVEGVKAIFSRSQEWYNVRYKQF
FT                 FPDHRSGIMYDTNYLGDGDSKGYKTVEELKPYGNEIHIKKQECIGHVQKRM
FT                 GARLRKLKQTLGSQKLSDGKTLGGRLTDEAIDRLQRYYGCAIRQNTRSIEH
FT                 MRRAVWALFFHTASTNEHPQHALCPTGDDSWCKYQSGKEYAHKNSLPNAVI
FT                 DVIKPIFRDLSQPSLLEKCLHGKTQNPNESVNNLIWIRIPKRCLYRDSQKV
FT                 FVQIKTLHFGVYDAVATYNEGNIIKCDVLKRLGFQPGHNTISTMRLIDEER
FT                 LRGAGRRDKSLQHAAKGKKRPVKRKLTLEKEEDADNPSYGAGMYHWKKKRM
FT                 LIIHHMGQECIKKLWKPFPVTLKFSSLRNIFSKTANSISMKFIHNIVYFIS
FT                 FIFITNCKKILYNSRVIEEKVQNFREKNKHLFKKIVKQKPINIS"
XX
SQ   Sequence 2526 BP; 870 A; 378 C; 547 G; 730 T; 1 other;
     ggggagccgg aacgatgaaa atgacaaaat taacgttttt ttttttttca ttataaaatt        60
     atttggagtt tctgaataaa acaaatmaag tttcaccctt ctaagtaaat tctaagtgtg       120
     ttttttatcg ctgcaaagtt gacgcgccgc gtaaatggtt gtagcgactt ggtgtgtcac       180
     ctctgaccgc tcgctggctg caagcagggt atctttgcgg aattagacag tgttttgttt       240
     tccaacgttg tatggcttta tctctgtgac aagtgactgt catatcggta aaataaacgc       300
     tataccgtgt gtgtgacttg tggagttgct ttgtgttgtt tagctgttca attttgcgta       360
     tttgacgaat tttgctcgta cctgttttac gtatttggtt tgtggatatc aatatgcccc       420
     gtttcagcga tcgagtgttt aagaaaaggc acaatgagtg gaagaagaaa tcttttgttg       480
     tttcagggag atgctgctca gactgcttca ctgactactc caaatgaatg tgatagaact       540
     tcttccagca agaaactttg gacagcaaag aaaaatttga aaactatgaa agtgacagta       600
     atgatgtgaa tgaaataatt aacatttcct tgctctctaa tattttgaaa cataacgtat       660
     tatgccaagt ttgcaaagaa agggactgga attgaaaata acttcacaca ttggtttggc       720
     atgtaaaatg ttattgaagt gtaacaaatg tgctgcagaa gtttcgtttt ctaattctaa       780
     ccagtattcc tcgtagtggt aatagtggaa agaaggtgta tgatataaat gttaggctag       840
     tgtatggctt gcgttgcatt ggcaagggca gtgctgcagg gacaatgtta tgtggaatta       900
     tgaacttgcc aaaaccacca accaagtttg gattttataa tgaattggtg ggatcttctg       960
     ctgaagatat tgctcaagca acaatgaaga aagcagttga agaagctgtg acagataatg      1020
     gaaattgtag agatttaact gttgctttag atggatcatg gcaacataga ggtcataaat      1080
     ctctaaatgg agttgtgaca gctaccagtg gagacagttg caaagtaatt gatgttgcta      1140
     ttctctcaaa acattgtaga tgtaagggca ataccaagga cgaacatagt gaaagttgtg      1200
     aagcaaattt tcacggcacg agtggagcga tggaagtaga gggagtgaaa gcaatttttt      1260
     ccagatcaca ggagtggtat aatgtacgat actaactatc taggagatgg tgattctaag      1320
     ggatataaaa ctgtagagga actcaaacct tatggcaatg aaattcacat taaaaaacag      1380
     gaatgcattg gacatgtgca gaagcgcatg ggggctcgct tgcgcaaact aaagcagaca      1440
     ttaggatccc agaagcttag tgatggtaag acccttggag gaagattgac agatgaagca      1500
     attgatagat tgcagaggta ttatgggtgt gcaattaggc aaaatacaag aagcattgag      1560
     catatgagga gagcagtatg ggcattattt tttcatactg catcaacaaa tgagcaccca      1620
     caacatgcac tgtgccccac aggtgatgac tcatggtgta agtaccaatc aggaaaggaa      1680
     tatgcccata aaaacagttt gccaaatgct gtaattgatg taattaagcc catattcaga      1740
     gatttatcac agccaagttt attggaaaag tgtttacatg ggaaaacaca aaatccaaat      1800
     gaaagtgtaa ataatttaat ttggattagg attcccaaaa ggtgtttgta cagataaaaa      1860
     cattgcattt tggagtgtat gatgcagtgg caacatacaa tgaaggaaac attatcaaat      1920
     gtgatgtgct gaaacgttta ggtttccaac caggacacaa caccatttcc acaatgcgcc      1980
     taattgatga agaaagacta agaggtgcag gaagaagaga caaaagccta caacatgcag      2040
     caaaagggaa gaaaagacca gtgaaaagga aactaacact ggaaaaagaa gaggatgctg      2100
     ataatccatc atatggggca ggaatgtatt aaaaaacttt ggaagccatt tcccgtaact      2160
     ttaaaatttt catctttaag gaacattttc tcaaaaactg ctaacagtat atcaatgaaa      2220
     tttatacaca atattgttta cttcatttcc ttcattttta taacaaattg taaaaaaata      2280
     ttgtataatt caagagttat agaagaaaaa gtgcaaaatt ttagagaaaa aaataagcat      2340
     ctgtttaaaa aaattgtaaa acaaaaacca ataaatattt cttaacatgg cattataact      2400
     ttgtagagaa atattcactg aacatgtagt ccaaatttca gagcaatatg tttaatggtt      2460
     ttagaaaaaa atgttccttc tatttgctaa aattaacatg gaggagatgg atcgttccgg      2520
     ctcccc                                                                 2526
//
ID   Kolobok-N1_ACe repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposons from Atta cephalotes, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-595
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 507-507 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~86% identical to the consensus. TSds are 4-bp long (TTAA).
XX
SQ   Sequence 595 BP; 161 A; 123 C; 99 G; 212 T; 0 other;
     ggggatgctg gagcgacggc cgaacttgat cgaggtcgat agtacagact tttttaaatt        60
     ccaaattcga taatagtgac atctttcatt catttcttat atttattata tattgtgtct       120
     cactcaaacg cattcatctg tccttatcta acatattgca acgccatctc ttgcaagatc       180
     gaacacctac tgctagacac aattattgct ttgtttacca ttccgagtct tcgctcagcg       240
     ttcgtataca cgtcatttgc agatcgatat aaatctttct ttttaagctt ttaatcttag       300
     tttcataaac tcagtattgt ttgtgcacgt aatgcgctgt gctgcactgt cgtttggtcc       360
     atacgagcta taaaactttt gtattaagga aacatctacg tcaggtgaca gctctacgag       420
     ttgaaaaaaa tgtaagtttt taactttttt tcgattttag tataaagtct attgcagcac       480
     catcaaattt tgcgtctact ttaatcctgt aaaaggattt ttgattccgt tcagtaaatt       540
     cggagattta tatcgatctg caaagtcccg acaatttggc cactccagca tcccc            595
//
ID   Kolobok-N1_AEc repbase;    DNA;    INV; 8251 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.03, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-8251
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 542-542 (2014).
XX
DR   [2] (Consensus)
XX
CC   TSDs are 4-bp long (TTAA).
XX
SQ   Sequence 8251 BP; 2799 A; 1403 C; 1345 G; 2704 T; 0 other;
     ttaaggggat gctggagcga aggctgaagt taatcaaggt cgatattaca ggtttttatt        60
     tccaatgtat aagatgctta cgccctctga gttaatatga tcatgcagga aattcgatcg       120
     attaattatc gatattttta ttccgtttcc tacattacca tcttagcagg gacgtgtatt       180
     agggtcggtt ccacaaatgt aaaatttatt ttggaaaatt ttccaatttt aaaattgaga       240
     aaaaaataaa ccgtaattga agttaatctt atatttgtag aatcggacct tagaaataca       300
     gttgtattat gtacacatgc agtgtaggcc gtgttccaat atatatcacc agtattaaaa       360
     atctgtaata tacataaagt acagattttt aactttaata gttatatcga tacgaagccg       420
     tagtagcact ttttccttac gtccaatgcc attttaggta ataatagtat caataaatga       480
     atacgtaatt gcacatacat aatgtaattc tttttcatga catatatata tatatatata       540
     tataatatta tatacatata tatgaaacac gtgtccatat attgacaata atatatgtta       600
     catcttgact aaatcctaaa atgatattga tcataggaaa aagtgatact acgactgtgt       660
     accgatatta actgcgagta ctgaaaatac gtaactatag cttttcagta ttgacagtgt       720
     acattgacac atggccctaa tagcattttt cctgttgtac aatgtcattt aggtcagaat       780
     gtgatatgta ttagctatac atagatatat tacacatata atatacgtag ctataccata       840
     ttttgctacg ttaataaaaa gatgtagaag ttaatcatgt taaaatatta gtgggtgtac       900
     ttaaatataa tacacatata ggcaatatta tacaatattg catatatgta tactataatg       960
     tgtgaatata tatacgttgc agatagaagt taccaatgct aagctattta tgcattccct      1020
     atgtttaaat atgcaatatt aaaattgtat acatatataa tatacacaca cacaatatat      1080
     atatatatat ataatgcgta tatatgtaca cataaaatga ggatttatca gagaattcgt      1140
     aatttgatta ttttttttaa gatgttacgt ctgatcatct gcgtttgact ctcgttagct      1200
     ttgatttatg ttagttgtat gtatattctg atattgaaaa tataaaagca tatatcacta      1260
     atatctgtat atttgaccat aaaaaaacat atctcttttt attaaacgta gaaaaaagag      1320
     gacatcagta cacctttttg ttacacgtaa caaaaagaga tgaagtagct acacacgtat      1380
     gtgaatatga attagaaata tattttatgt tttgtaatgt gtgtacatca taatgcacat      1440
     aaaatataat tctaatattc actaatgtgt ctatattata tctgcatgaa aagctaagta      1500
     tgagtaactt ctatctctct ttttatgggc cttctacaat aagccattag ttacaaatca      1560
     gaagtcagaa gctaaaaatt gatcaatcac agtcaatttt tagcgtctga cttcttattt      1620
     atggctgatt tatggcttat aattgtaaaa ggcccattaa acataataaa aagagatgga      1680
     atagctacat atgtatgtgc aatgtattta cgtactgaca atacatgtta catcctaagt      1740
     taaaatggca ttgggaataa aggaaaaagt gctattacat tacacgtata tacatgtatt      1800
     tcaaatacat ggttgcatcc gaagatatat ctaagtcaca gtcagagtgt tcatttagta      1860
     aaaatatact tattgtaact tgctgttagt caacgtacac attggctaaa acattttacg      1920
     ctttgaatat gatatactta tatacatttc ataaacgtac agcatcgtac gaaaattatg      1980
     catgtgacta ttgactgtgt aatgtatgtt atatatatgt atacatatac atatatatta      2040
     tatagggtgt ccaaaaagac cccggattta ggagctgaac ataaaggtga ctataactat      2100
     aatcgtaaag gaatgtgaat tgtacttgta tcggcatgca tagtacgcca aaatataatg      2160
     cgttgaccta tgattcacgt tctcttctac gattgaatta cggccattct tgtgctataa      2220
     ggccattaca taacgttttt agaaaaaacg tttcagacaa aagttgtaag gtttcaaaga      2280
     agctgtttac tgatattcag tttttttttc ttcattagtt tctttgtttc gatcatgtca      2340
     agcaatcagc ttttgattcc atcatgacaa tgcatctatt cacatttctt taattgcaga      2400
     cgcaaaattc tacaaattgg ttccgtaatt gtatttcacc aaatttgata atcgaatgcc      2460
     tctgccagta aattaaaaat agtcagtcca cgatgaacgc ctctgacatt tatctataac      2520
     tagccaaagc acgatttacg gctgtggcat tttgttatag ctagccagct cacaattaac      2580
     gcctctggca gtaaattaaa aatagtcagc ccacgatgaa cgcctctgac attggatcat      2640
     aattaggcaa agcacaattt attgttataa catttaacca tatcacttgt atgataaata      2700
     aaagtgatat tttcacgaat gacataaaga tgctaacctt tcccattctg gctttatagg      2760
     gtgccttcca acaagaaaca cagtgtgaca cggtgcatca ttacaatctt gttcgccaat      2820
     acaaggatga gataatcact gtattgtact gagtgagtcg cttgttagaa agcacccata      2880
     accttctctt accaaaggca gacaattttc tgctactata ttttttctat tttgtggaca      2940
     caaaacacta tataaatatc accacacaca cacacacaca cacacacaca cacacacaca      3000
     catatatggt tgtgtgtaga acactactac actacactga attgacagta ctgttgcgcg      3060
     gcaacgatac tgtgaacgcg ggtcatactg gttacagctg attgactcgt ataacgccgt      3120
     tgttttctac acatacagcg tcacgcaaaa cgatatatgt atgcatatac atatacacac      3180
     atacatacaa aaaattttta cttttcactc taagaaaaaa gatacataat cgatatcatg      3240
     gtcacattat cttctcctta gcgactaatt aagaaaaggc gttcaccgta tctaaatcca      3300
     cgttattgta aaaactctct attatctttg aagttctatt attgatacgt catttaagtg      3360
     cattctccag gtttattcca ctaaaaaaaa atacaaatag atgaccagat atatgacgcg      3420
     gtaaagtaaa attctatatt acattctgtg gcacaaaaac gtgatcagta gctctttgaa      3480
     actgaatgta tcataaaaat aataaagtaa tattttaaaa gtacattaca ttcagtaaaa      3540
     tgcattaagt tattaatatg atgttcaatc accattatta agaaaataca atattatgta      3600
     ggaaggaaaa tattttcatg acaatttgct ggaaggtatg gtcgcagcat gtttcttata      3660
     ctgtgacgct cttgagatgc acgtccgcgc gtgagcggtt cggccgtcaa gcgtcgagcg      3720
     gttgtgaagg aaaagtaggc agcatttcag aaatcggccc gaaatgcgca actaatttcg      3780
     agcacattga agtacacgta tataatttct gtaattttat aaaaagatat atttggagta      3840
     atatgtttat taataacgtt atttattaaa aaaaaattat gaaaaaagga aaaagcagga      3900
     tcgaacataa gatcttcaat attctgatct tgcacccaac gcccgagacc acgctgagtt      3960
     cttgcggatc acctcgacga acgcggtaca tacagcgcac ggaaagtcgt aaactattgt      4020
     atatctcatc aatgtttatg ttttgaaatc atttttgcta ttatacgtta atgagaaaga      4080
     tatatgatta atataattta ataaaaagaa aatgaaagaa ttttaattca caaacacggt      4140
     tgccagttct ccgttttttt tttgccagac ttcggttgct tggactaata tttaatactc      4200
     cagcagacga caaaaattgg agattttcac atctgctgga gtattgaata ttagtccaag      4260
     aaaccgaagt ctgtcaaaaa aaaaacggag aactggcaac cgtgtttgtg atttaaaatt      4320
     ctttcaattt ctgttgtttc gatagagcga gacagagaaa aaacaaaaac ggatagaagc      4380
     tccgattgta atcggtgagt ctccgcgcgg acacgccgaa ctgggctcgt ctagcaaaac      4440
     aatgagtctg tctctgtcct tctctctgtg gtcgcttgtt tctagcgacc gaaaatattt      4500
     tctcggcgat ctcggccgct tggcgtgtat cataaggggg aaagagacat tctagataat      4560
     acataatttt tattaaatta tattaatcct ttgccctacg atttaagtta cgatggcgcg      4620
     tgccataatt aacagcctgg aacgtgttgt ttatgtttgg cccgatagac gtaccacggc      4680
     tctcatcaat gatacttatg tttggcccga tttctttacc acgagtctca cacgatattg      4740
     taagtgaaag ggttaatcat atacctttct cattaatata taatagcaaa aatgatttca      4800
     aaacgtgata gttgacgaga tatagtttac gattttccgt gtattttatg taccgcgttc      4860
     atagaggcga tccgcaaaaa ctcagcgtgg tctcgggcgt taggtgcgag atcagaatgt      4920
     tgaggatcct atgttcgatc ctgctttttc cttttttttc ataatttttt tttaaacaaa      4980
     taacgttatt aatgaacata ttactccaaa tatattttta taaaattata gaaattatat      5040
     gtgtacttca gtgtgctcgg aactagttac acatttcgag ccaatttctg aagtgctgcc      5100
     tatttttcct ttacaaccgc tcaacagtcg aaccgctgga tcgcgcgcgg acgtgcatct      5160
     caggagcgtc acagtataag aaacatgctg ctatcatacc ttccagcatg aaaattatca      5220
     tgaaaattat catgaaaata ttttccttcc tacataattg ttattttctt aataatagtg      5280
     attgaacatc atattaataa gtaaatacat tttactgaat ataatgtact tttaaaatat      5340
     tactttatta tttttatgat acattcggtt ttctttcaaa gagctactga ccacgcttat      5400
     gtgccacaaa atgtaatatc ttttaatata gaatactgat aatatcaatt taaggctaat      5460
     aagagtcgat acagaacgag atgcgtaatt ttaaactgga atgacttaac tccaataact      5520
     ccgtgatgtc ttctttattc aacatgtgaa taaagaaggc atgttgaata aagaagacat      5580
     cacagaagac taaggaaagt aaaggattga taatttgctg gaaggtacgg tcgcagcata      5640
     tttcttagtg caacgctcct gagatacaca tccgcgcgcg atccggtgcg gctcagccgt      5700
     cgagcattga gcggcggcgg cggggggaaa gaaggcgacg cttcaaaagt cgacccaaaa      5760
     tttaacatgt actccaataa ctataggaag aataccgaat cacttcaata gataaataaa      5820
     aaattatttg tatattgcat ataaaggcac atataaaggc tttttgattt gttaattata      5880
     aaattatatt gacatcatcc ttataattat attaatcatc gcacttttgc gatttgattg      5940
     attatcagaa ttttcattcg gatgatagtt ataaaaaaaa catttcacag aaagtactga      6000
     tcgacatcaa cgtaacatta ttacagaaac atgatttctt tttggatttt ttctaaaggt      6060
     aaacagatct cacatatatc tttacatata aaaatactga ttttctatct attcgacgca      6120
     tactacgtcg aattattttt tgctacaatt gtcggtttaa aacttttaga aatacacata      6180
     taatttcaat aattaaataa aaatatattt agcctgtaat atgtgtttat taacaatgtc      6240
     acttattaaa aaaaaaaatt atgaaaaaag aaaaaaggaa ttgatcatgg gatctctaac      6300
     attcagatct cgcatcttac gcgtgagacc acgccgaggt cttgcaaatc acttctatga      6360
     acgtggtata taacgctcat ggaaaatcat ggaaatatca atatctcgta aattatcgtg      6420
     ttttgaaatt atttttgcta ttatacataa attggaggga tataggatta gcataattta      6480
     ttaaaactta tatgttatct ataatgttcc ttctcctctt aattatacac gttgagcggc      6540
     cgaaatttcc cagaaagcat tttcggtcgc tagaaacaag cgaccatata gagagagaga      6600
     gagagagaga gagagagaga gagactctga aggatagact cgctgtttcg ttcgacgagc      6660
     ccagctcggc gtgcggagtc tcaccgatta caatcggagt ttctatcctt ttttgttttt      6720
     tctctgtctc actctgtcgt acttctgttt caataattcg ttctgcaatt caagaatgtg      6780
     atttctatcg attctggcat catcgccgat gcagcaagga cgcatgattc cttttctaaa      6840
     caacgatcct gatatatatt tctatatata caaaaatata ttattattat agcgtttcca      6900
     accgataata tattgctggt ttatacaatg attcaatcca tttctgtaat taaatagcgg      6960
     tacttcgctt gtgcgcgata agaggaatgg cgcttcttac taagtcgaca tttcgacatc      7020
     cgagtcgaat caaaaatgtg ctatatacaa taatttcaga ccttgcacgt ttaaaataag      7080
     tagctggcga tttacagaaa acctcaaaga acaatactat gcttgcagaa acgagttatg      7140
     agctttaata taagagcaat gagtattcga aaatttcatt tatatgctac gtctgctacg      7200
     agattgccgc ttgtcgttcc gacatccgag cagaatcgaa gctcaaccga aacacacatc      7260
     gcgttccgag ccctgatata tgcatgtgta aataattcag taaataaagt ttagacatgt      7320
     gttgtatata tgtacacaca cacacgcgcg cgcgcgcacg catacatacg cacacgcgtg      7380
     tgtatgtatg ctattataca cacacacaca cacacacaca cacacacata tatatacata      7440
     tatatatata cacacatata tatatataca tatatatata ttacatgtat attatatata      7500
     catacataac atatatatat atatgtatgt gttattttat atatatgcat caataattta      7560
     ctaaataaaa tgtatgtaaa agacagaaca gtgcaattaa aataattatc ttcatttgta      7620
     ttcatatgta aataatatgg tatgtttctt gtttaggaag aaattatttc aacaaaattg      7680
     aaataactaa tatcatattt attttattat tatttttcct ctcaaaagaa aaaactttga      7740
     ccagggcacg tttattgata tgggcctgag taggtcgata attcagatca tttctatggt      7800
     tcagcgacgc acttttcatg acagcgccgc tgtcggaata tcgcggaact aaaatactgc      7860
     ttggtttcat ggcttcacgt caatttcact cgtaatatac aaacgaaatt ttcggatact      7920
     cttttctctt atactaaaac ccctacctcg tttctaaaag cataggattg ttcgtttagg      7980
     ttttccgcaa ttcgccagct actttttatg aacgtgcaag atctgaaact cttatatgca      8040
     gcacatattg tgacgtgttg actacagaag ccgataacaa aactgtaagt cttcaatttt      8100
     ctttcgtttt tcgtattcaa atgtagctgg cgaattgcgt tgttgtcgat actttaattg      8160
     tggagaagga tttttcaatc cataaacaca attaagagaa aagagtcttt aataattaat      8220
     gataaaacag gacactccag catcccctta a                                     8251
//
ID   Kolobok-N1_BTa repbase;    DNA;    INV; 440 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-440
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 643-643 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 440 BP; 138 A; 85 C; 82 G; 135 T; 0 other;
     ggtgattcga tggacgccat attttgtgtc agaacggcat gcgatatatc gcatcaattg        60
     gttccatttt ttcagctact cgtcattttt ctccaatttt gagatcgcaa ttctgttgtc       120
     aggagactaa agcactcact taccaatttt aacaaagaaa ttcaacgtaa taaaggcgtg       180
     gtttttttag agagaaaaca tcgcattcga tactgatatc gaaactgcac tcgaatgcga       240
     tattttctct ctaaaaaaac cacgccttta ttacgttgaa tttctttgtt aaaattggta       300
     agtgagtgct ttagtctcct gacaacagaa ttgcgatctc aaaattggag aaaaatgacg       360
     agtagctgaa aaaatggaac caattgatgc gatatatcgc atgccgttct gacacaaaat       420
     atggcgtcca tcgaatcacc                                                   440
//
ID   Kolobok-N1_CFl repbase;    DNA;    INV; 535 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.04, Created)
DT   04-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from Camponotus floridanus, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-535
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 804-804 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus. TSDs are 4-bp long (TTAA).
XX
SQ   Sequence 535 BP; 166 A; 103 C; 85 G; 181 T; 0 other;
     ggggatccct cactgaacgg cgaactctta cacgattaca gcgccctcat ctaatcctca        60
     tcccgtatct ctctctatca cgttatttat aaagaagatg cactgctttt tccactctac       120
     tttaccgata tttcaggtac atacggactg aaattttcgg aagaatgcca tttattaatt       180
     aggcaattaa attcagtttt tatagttcga caatgttcta cggtgcagta cacaatcgtg       240
     aaagctactg ttttatgcat aaaagctata aaacttttat aagaagctaa tatttgtaca       300
     agttgacagc tctgacgcca tgttgattta agaagtcgat aaataaaaat gtaattttat       360
     acttattttc tttctcaata taaaatctca tactgtatag agttttcacg tgtccgtttg       420
     cgtgtatact tcaattctgg agaaggattt ttaattctat acaggcaata aaaaatggca       480
     cacttccgaa aattacggtg tttttgtcga taaaacagac gactttagga tcccc            535
//
ID   Kolobok-N1_DAn repbase;    DNA;    INV; 726 BP.
XX
AC   .
XX
DT   22-AUG-2012 (Rel. 17.09, Created)
DT   22-AUG-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-autonomous Kolobok DNA transposon from Drosophila ananassae.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-726
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ananassae genome.";
RL   Repbase Reports 12(9), 1768-1768 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TTAA TSDs. 17-bp TIRs.
XX
SQ   Sequence 726 BP; 270 A; 113 C; 123 G; 220 T; 0 other;
     gggggcatgc gcacttggag ggccaaaaaa taggcatttt ttccgaattt ttttctcgta        60
     aactattgaa tttttttgaa atatcgtttt attatgtgaa agtacattat tttaacttaa       120
     atttgaaaaa aaaaaagtag aaaatattta ggggttgcaa agttatgccc cgtcgaagtg       180
     aggtccatcc gaaaaaggcg agttgcggtg accaacactg tgaaaaactg gatagtccga       240
     aatcaaaaaa tgaaacggat ttacatttac taaaagtaaa tctagtactt aatcgaagga       300
     tattaaaaaa aaaaaatatt tgacaaaatg gcgacctttc aaagttgaaa aatcgttttt       360
     cgtcaaaaaa atcggtagtt tttcagctgt aaaaaaaaaa gttttgcata aaaaaaaaaa       420
     tccttcgatt aagtactaga ttattatgta ataaaagagc atgctaaatt tcaagacaat       480
     cgggtcacta gttttcgagt aagagtggtc accgactttg aaaacgtagt tttgagaaaa       540
     acgtgtttaa agtttcaact caccattacg cttaccggac gcccctccct ttcaacatgt       600
     gtatctcact gaattttcac cggatcattt caaaattttg tggacacatt tctaaatgta       660
     tatactttaa caaaatgcaa aaaaaaaaaa ttcgattttt tgaaatttac aagtgcgcat       720
     gccccc                                                                  726
//
ID   Kolobok-N1_DEl repbase;    DNA;    INV; 704 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Kolobok transposon from the Drosophila elegans genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-704
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4043-4043 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus.
XX
SQ   Sequence 704 BP; 226 A; 128 C; 110 G; 239 T; 1 other;
     gggggtcttc tactctcgca gtttcaaaaa atcgattttg tttcataatt ttaatcttta        60
     tgtgtctggg aatgcgctgc aaaaaggatt ttgtcgaaat aatatttttt cgcatgttcc       120
     tgaaaccgta aggtacctat ttcaaccaag ttatacaccg taatttacct ttaaacgcgt       180
     tttcccgaaa gtagtgtttt tttagctgcc gagtaagact ttttgtagaa gaactagtcc       240
     gattttaata attttktttt ccaattgttc acaaaacata ccgctatgtt tggccgagta       300
     cgattttcga aatcattttt gttccgtttt tataggtcaa aaaacgacgt aaaaattgaa       360
     tttttcactt attgttgcat aacttttgct aattgcaaaa taaaaaaaat gcctcgggag       420
     aaatagtcga cgtaactacg agtctaaata tcaattttct gatttcagat caacccgctc       480
     gccaaaacgt gacttaagcg ggaccactgc agttttacat gtgttatgaa aagcacattc       540
     caaggttctg gaaaatttat tttcaagtca aaaacaaaat ttacaagtca aaacatgtgt       600
     ctttaaataa taaaaaaaaa cttttcaaat ctatgcagta taacttttgt aattaattcc       660
     ctaagtaacc actcagtttc tcgcctcgag agtagaagac cccc                        704
//
ID   Kolobok-N1_DF repbase;    DNA;    INV; 726 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-726
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 767-767 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TTAA TSDs. 19-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 726 BP; 246 A; 120 C; 117 G; 242 T; 1 other;
     ggggttatat acctttttca agctcaaaaa atcgaaaaaa attttataat ttttttttga        60
     tgtacatact ttcaacaatt twtctgcaaa attttttaga gatcggggca ctagaaccta       120
     agatacagcc gttcatagcg cacggtgtac atgactacat aatgtccacc taaaacttta       180
     aacgcgatta tctcggaatc acatttttga gaaaaggtca ttgcggtgag cacgatatct       240
     cggtaaccac tacatcgatc gatttgaaat tttgggggat tgtttgtaga tacaatagct       300
     agttcgtgaa cgaaggaatt ttattttcga caaatttttc tatttttttg gggcaaaaaa       360
     ctaaattatt agacctcgaa aaatcggttt ttttgaaaaa ataatcactg taactgtaaa       420
     aaattttttt cgtaaaatcc ttcgttcacg aactaggtaa cactatatac taacgtagtt       480
     tttttctctg ttgagccgtt tccttgtttt catgctcacc gtgagccact actgaaaaaa       540
     ggacttctgc ggcaaggact gtaacttcca aaattatgaa aattttcact cgaaatttta       600
     tacgaattta cttaaggaca cgtacgttga taaaatttgt attgtatttc aataaaacaa       660
     tggtaacatg gtaaaaaaaa taaataaaaa ccctgtattt ctctggagaa aaaggtatat       720
     aacccc                                                                  726
//
ID   Kolobok-N1_DSuz repbase;    DNA;    INV; 730 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-730
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 138-138 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. TTAA TSD.
XX
SQ   Sequence 730 BP; 238 A; 137 C; 125 G; 230 T; 0 other;
     gggaacgttc tctttgtttt ggatcaaaaa atcgattttt tttttgcaaa aattgaaagc        60
     cacatatccg tagagtatgt gtgtgaaagg atttttcgat acgatgaata gtttgtgaat       120
     gagagcgtct cgaatacacc tgcgtcacgc gcgctgcgta cttttaaaaa actttaaacg       180
     cgtttttctc gaaaccatgt tttccaaaaa aattccgcgt ccacagcttc atcctgtgaa       240
     ccgatttgct tcatgtaaaa tttttatgaa agtatatgct tttttattgg gcactaagct       300
     actccggaaa taaacaataa tttatttata atttttcaac gtggtttaac tgaaaaaaaa       360
     tgtacgaaaa tcgaacttta aaattcgaac attcattacg cggtcaattt atggccgcaa       420
     tttgatgcca ttaggttagt gccttacaaa agtatattaa ctttaactaa tgataacaat       480
     tttctatttg agttgactac aagaggctgc aggctcggaa tttttggacg atgtttgccg       540
     cgcggaggca gacgaaagcc gccattttgc agccgccatt ttgaatttca ccatcaaata       600
     aattttaaaa aaatcttgaa taataaacga attcaaaaag caaaacccga agttcgtacg       660
     ccttttcatt atcccacaaa aaattgacga actttgcctt catttcgacc aaaacaaaga       720
     gaacgttccc                                                              730
//
ID   Kolobok-N1_DTa repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-733
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6250-6250 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. TTAA TSDs.
XX
SQ   Sequence 733 BP; 260 A; 123 C; 113 G; 236 T; 1 other;
     ggggggagat acatatagaa aacaaaaaaa attcaatttt ttttattatt taaattggta        60
     gtataactct ttaagaatgt gtcatgaaag tttcacgaag aaattcgaac tattttggaa       120
     cttataccag gatgacggca cccatcttcc ttgtgcagta gatatatttc attactttaa       180
     atgcgttttt ctcgaaacca tgttttcctc agctgcggat cgtgtatctc aaaaagtaat       240
     gcttcgatca tcatgctgct tttacagaaa tgtttgtaat gaaattgccc actgtctgaa       300
     cctactttat gtagaaattt gtacgtttaa gtattttttg taaagcaaaa acaacaagaa       360
     aaatatgaaa aaaatatatt tttgactttg aaagagtgcc acaaccagag tttttgagat       420
     attctatgta agttaggttc agacagtttc tacattattt cttaacaaaa taaatttggt       480
     ttcataaaaa tcggatctac acagcgacct gtggacgatc cgcagctggc ctactttttt       540
     ttaaaaaagg cctgacaaaa aaattcccac ggccgccatt ttaaaagata caaaaaaaat       600
     taaaattggt ttaaattata taagaactat gtaatcaaca tgccaagttg cgaamttcca       660
     gcacaaaccc ttattggtta aaaaaaatca cgaaaaactt gacaaatttg cagttctata       720
     tgtatctccc ccc                                                          733
//
ID   Kolobok-N1_HSal repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.04, Created)
DT   04-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-528
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 839-839 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~77% identical to consensus. TSDs are 4-bp long (TTAA).
XX
SQ   Sequence 528 BP; 162 A; 96 C; 96 G; 174 T; 0 other;
     ttaaggggat gccaaagtgg atgacgaact ccaaaagtgt cgataacgta gaggcgaaac        60
     gtcatgtcag ataagcacta acacgatcac gctatccttt tcgtatttct tgtacatata       120
     gatctcatat aaatgtgtgc tgctgtttta ccatatttag cggaaaataa ccgcgcatat       180
     atagaaatct ttctgcaaac ttttcgtgta tatttttaag cttctaaatt cagttgtaaa       240
     ggtacagcaa tgttctttga aattttcctg agcggagcaa acacacgttc ggtacgtaca       300
     agaacttttg tatcaggcaa atatttacgc taactgacag ctcgagatgt caattttgaa       360
     attttttatc gttttcgtca catattgagc aatgctccaa ttcatttttg cacgtacttt       420
     cattgtgtaa aagcatttgt aattctgtgc aaccaatacg acgtaaactt tgcaagaaaa       480
     aaagtcagta ttctgtcggt gaagttttca agtatggcat ctccttaa                    528
//
ID   Kolobok-N1_LHu repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Linepithema humile genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-616
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 357-357 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TTAA TSDs. Terminal sequences are
CC   similar to the 3'-end of Kolobok-3_LHu.
XX
SQ   Sequence 616 BP; 196 A; 110 C; 103 G; 207 T; 0 other;
     ttaagaggat gctggagtgc ctgacgaact ccgacgcgaa agcgccatca tttcgatgga        60
     actaaaaatt agagtgatat tatcggcata agtcataatc taagtatgaa tgtattgtgt       120
     atgcgtatgt gtggtgcgtg tatatattcg catattattg tatagcgcct ctctgatatt       180
     atcctggaac taatcttctg ttattttttc atctgttata ccgatattgg acgcacacgt       240
     atgtaaaaat agtcggacaa gaatattttt tacattagac ttttcagccc aattttaatg       300
     gttccataac attctattct gcagtccgca attcgggctg ctcttattca gcgtcttaaa       360
     actgttaaac ttttataaaa aacgaaaata gatagctcta tacaatatgt tatcctaaga       420
     gcagaataga aattaatgaa tagaaacaaa ttttgttatt aattcttttt tttccaaata       480
     aagtcgagca gcccgaattc cgtttttgtg tacactttac tcctgcaaaa ggatttacaa       540
     ttctatgcaa ccaataaaaa gatattcttg ttcgaaaaaa tataatgtcc ggccggtaac       600
     tccagcatcc ccttaa                                                       616
//
ID   Kolobok-N1_LMi repbase;    DNA;    INV; 1064 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1064
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3000-3000 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1064 BP; 382 A; 192 C; 201 G; 289 T; 0 other;
     ggggagccgg aggtggtcaa atcaaaaaat acattttttt gctatcaaca attaattgga        60
     acattcctct ttaatgcaaa ctttgaatta ttgttctact cgtcctagaa gtggagttat       120
     taccattttc tcccgcgcct gcacaggaaa ttggcggggc cgctgaatgc atctaacacc       180
     ctctcgtgac tttcctggtg caaatataat gccaaaaagg actatgatca caagcatggt       240
     ttgccagcag ctgtgataaa cacaataaaa ccaatttttc atgacttagc acagccagaa       300
     ttgttacaca aatgtctaca cggaaaaacg cagaatccta atgagagcgt aaacaattta       360
     atttggacag tgattcctaa aagagtgttt gtaagcataa aaacactaca cttcggcatt       420
     tatgatgcaa tagcaaccta caaccaagga aacagtgtga agtattgaag gcattaggat       480
     ttcaagctgg agtgaacact gtacgagcac taagaaatat tgacagagag agggtaagag       540
     gagcagaaag aagagaaagg aatatgaaat atgatggaac aacaggccag aagagaagac       600
     caaaacggaa gcttttggag gatgaagaag aagaccctga taatccatcc tatagtgcag       660
     gaatgtattg aaaaactttg atagccattt cccgtgaatt agaattttcc gaatgtaagg       720
     aacattttct caaaatccac tcaaactagg gagatgaaat ttttatacag cactcctagt       780
     ggtcaaactt aaattgtaac acagccattt agcaatatgt tcagtagttt catttcaatt       840
     ttattaaata aagcattttt tttttaaaaa aagttgggtc attaataaaa aaatattgaa       900
     aggaaactag aaaagatact ccaatatccc tccatcataa ctgcaatact aaaccactct       960
     atatgttgaa aaaatttcaa attcttcggt ttggtagatt gttcataaat gttcctcaaa      1020
     cttagtgatt ttaacatggg cagcataggc acctccggct cccc                       1064
//
ID   Kolobok-N1_PBa repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-509
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 612-612 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TSDs are putatively 4-bp long, TTAA.
XX
SQ   Sequence 509 BP; 180 A; 95 C; 79 G; 155 T; 0 other;
     ggggatgctg gactgacgag cgaactccga cgaaaacgtt cacacatatg cacatctaca        60
     catacataga tacatttatg tatacataca tacactcata catacatttc tgtacacaca       120
     tgatacacat atgaacaaat ttttgtgata ctcccctgat cgtaataagt gtctaagcct       180
     aattctaaga actcaacgtt gcttcttcat gtaaccttct agtctagcaa tatcagtttt       240
     gtaggtacag gctgtaaaag tttcatataa agcaaatatt tacgcgactt gacagctttg       300
     gacgccattt taaggtacca aatggtaaaa aagatctaaa ttttaaaatt ttttctcgtt       360
     cttgatacga aattcatatg ctaaacacgt attaatgcat aaactttaat tgtggaaaag       420
     gatttccaga tctataaagt taataaaaaa tgagagcaat acaaaaatta ctgcgttttg       480
     tcggtaatac agacaagttc agcatcgcc                                         509
//
ID   Kolobok-N1_RPr repbase;    DNA;    INV; 908 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Kolobok DNA transposons: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-908
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3244-3244 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined.
XX
SQ   Sequence 908 BP; 305 A; 156 C; 150 G; 297 T; 0 other;
     ttaaggggtt ataggcagtc agaaatttga aaaaatcgat ttttttttta tttttttata        60
     ttaaagtata gtatctcagg aatgttgtcc taaaatttca agtcgatccg agcaaaattg       120
     taagagtgaa agtgtttaca agccccgacc gttcgaatta ccatcgctga gcacagagct       180
     caacttgcta cgcgggaggc aagaatccta cgcagacagc agaaatcgga aaacttggac       240
     attttggaag acatggagga cttattttat gggcctggaa tcgatgacac tgtgtaagtt       300
     gaaaaaaaga ttatccaggt tttattcgca aacctttaac cgctgaaaac tttaaacgcg       360
     tttttctcaa aactacgttt tcaaagtcgg tggacacgat atctcaaaat ctactgcacc       420
     gatctttttg aaattttacg tatttctttt acacatatta aaatcgtact tggacgaagg       480
     attttttttt ttcaatgaat agaacttgtt ttacaaacat aaaatggtca atttttttta       540
     gtgaaaatcg tgaatcaaac tttaaagttg tcccaaaaat taaaaattca atttttttct       600
     aaatccttcg gtcaagtacg agataaagtc atctactaac gaaatctttt cgaaattttg       660
     atttcagatg acccagtctc aagatatcat gtccacgaga gggttgcatt tttttgacgt       720
     gttgcattaa aatattcgcc attagtacaa ttattattaa tttgtaacga aaaaattaca       780
     ataagttctt taaacatgga ctgatatgac gcaaaagttc ccgaataaaa aagtaaacac       840
     gtttttcccc cccaaaaaat ttgaaaaaat gacttttttg gcgcctctga ctgcctataa       900
     ccccttaa                                                                908
//
ID   Kolobok-N1_SIn repbase;    DNA;    INV; 570 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-570
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 389-389 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. TSDs are 4-bp long (TTAA). Terminal
CC   sequences are similar to the 3'-end of Kolobok-3_LHu.
XX
SQ   Sequence 570 BP; 148 A; 110 C; 110 G; 202 T; 0 other;
     ttaagaggat gctaaagtaa cagaagaact tcctcgacgt cggtccagat cactgcagat        60
     tatttttcga gcgagaccag gctatcgctc tttgtccaac gcatagatct gtctttgttt       120
     ttcgattatt tcgccatctg cgaaaagacc tatcaactac tgttgggcac catactgctc       180
     tgtttatgac agttcagctt cgctgagcga aatatgcatg tggtaaaagc acattagcat       240
     atcttttttg ttaggcgttc agtcgtaatt tcacacggtc agtgttattc gtgcatgttt       300
     tctgaagggt gctctactat cattttgtac gtacgagcta cacaacttct gtattaaggt       360
     aaagttaacc tcaggtgacg gctatacgag tgaattttta atgatttatt aaatttttgt       420
     tcgattttct tgtaaaattg acctgagcac cctttctttt tacgcgtatt tcaattctaa       480
     aaaaagtttt tgtgattctg taacgccaat tcgaagatat ttagtgcact gtaaatgtcg       540
     gtaattcgcg gtactttagc atcctcttaa                                        570
//
ID   Kolobok-N2_BTa repbase;    DNA;    INV; 442 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-442
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 644-644 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 442 BP; 127 A; 91 C; 92 G; 130 T; 2 other;
     ggtgattcgt caagctcaag agamgtggtc gaactggcat gcgatatatc gcatctttta        60
     ggtcaaaaat ctcggcagat tttgaatttt cagcaaagaa aaggacgata gcccctgcgc       120
     atgagcctga agaatcattc taaacccaaa aatcggcaaa attcagagaa atgaaagcag       180
     gatagtgttt ggaaaaaaac ctcgcattcg attcagctat cgatttcggt atcgaatgcg       240
     aggttttttt ccaaacacta tcctgctttc atttctctga attttgccga tttttgggtt       300
     tagaatgatt cttcaggctc atgcgcaggg gctatcgtcc ttttttttgc tgaaaattca       360
     aaatctgccg agatttttka cctaaaagat gcgatatatc gcatgccagt tcgaccacgt       420
     cacttgagct tgacgaatca cc                                                442
//
ID   Kolobok-N2_CFl repbase;    DNA;    INV; 630 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.04, Created)
DT   04-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from Camponotus floridanus, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-630
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 805-805 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus. TSDs are 4-bp long (TTAA).
XX
SQ   Sequence 630 BP; 226 A; 97 C; 98 G; 209 T; 0 other;
     ggggatgccg gagttctgtt ttaccgataa aatgttatat ttcatttttg tccgaaatct        60
     ttttattagt tgcacaaaat aataaatgct cctccacgat taaagtacat acagaaacaa       120
     agcgggaacc tcctgatttt atattaaaaa tttaaaaaaa aaatcgtaaa aaggtcataa       180
     caatatttgc ttaatataaa agttttgcag tttgtatgca caaaataaga taggttcccg       240
     ctagagattg tatgaaggaa tataaatgaa cttttagaaa tgagtttaga agcctaatga       300
     aaaagatttc ggtaaataaa ccgaaatctt ttttattagg cttctaaact catttctaaa       360
     agttcattta tattccttca tgcaatctca gcgggaacct atcttatttt gtacatacaa       420
     agcaaatatt gttacgattt gacgccagaa gccgataaaa aactgtaatt tttcaatttt       480
     ttcttaacat aaaatcagga ggttcccgct ttgtttctgt atgtacttta atcgtggaga       540
     agcatttatt attctgtgca actaataaaa agatttcgga caaaaatgaa atatgacatt       600
     ttatcggtaa aacaggactc cggcatcccc                                        630
//
ID   Kolobok-N2_DSuz repbase;    DNA;    INV; 723 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-723
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 97-97 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. TTAA TSD.
XX
SQ   Sequence 723 BP; 256 A; 121 C; 115 G; 230 T; 1 other;
     ggggggcact ctatgaaacg gcagaaaaga ttgtcagttt tcttcttttt attgtaaatc        60
     aaccaaaaaa cacaggatat tcccgtttac aatatcttta gacataagtc tgaagttaag       120
     aaaacaaggt tttgtttgta aaaaaaatta aaaatggcgg acatattgaa catcgcccac       180
     ggctggtttt aaaaaagttg tctccccgtc ctcacgatat cgtctcaagt tgaagtctga       240
     aacatacaaa ttatatatca aattaatcag caggcttgtc tcaagtgcat gaacctcaaa       300
     aactattgaa attttttaaa attagcaaca aaaccatata aaaacaaaaa agtgaatttt       360
     tgctctgttg tttttattga aaaaacattg aaaaaaaatt ttttttcatg catttatgtg       420
     gttcatgcac ttctctgttc aatatcctac aaaatgagtg ttcatttttg aaaatcggtt       480
     caatggtttt ttttttatcg tgaagacgga ctctaaaaac gtggttttga gaaaacgcgc       540
     ttcgamgctg tagtaacgaa cacctggcat gactatgcac gagcaaattc tagaaattat       600
     atctccgaaa gtaataggaa ttcgactttg aaactttgca attatgttct cagataatat       660
     atctatcgat taaagcaata aaaaaaaatc gaatttttga acccatttca tagagtgccc       720
     ccc                                                                     723
//
ID   Kolobok-N2_DTa repbase;    DNA;    INV; 721 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-721
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6198-6198 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TTAA TSDs.
XX
SQ   Sequence 721 BP; 225 A; 136 C; 110 G; 250 T; 0 other;
     ggggggacat ctaggtagaa ttttaaaaaa atcgaaaatt ttttttttcg cttaaaaaat        60
     tctttagggt cttaaaaata acataccaaa aaatagagtc cgtcagaagt gtctaagtgt       120
     cgaaattttc cattctgcgg cgatgcctca caggtatatc ccgggcacct taaaacttta       180
     aacgcgtttt tctcgaaact actttttttg aggtggccgg acacataact cgaacaaatc       240
     ttaaacgatc gatcgatatt tttgacagta tattcaaaat acctatgtct atcgacggac       300
     gtaggatttt ttttttattt tgcttacttt tttttatcaa caattttgtg acgtttttta       360
     ttcgaaaaaa tgttactttt ttttcaatca ctcaccattt tgcaaaaaat caatatatcg       420
     aaaaaatcct acgtccgtcg atagctgttg atgtatagaa actaaccaat tttttttttt       480
     tagatcaaaa attaaggacg ttaggtgtcc ggccatggac ccccttcaac aaaaaagggc       540
     ctacgaagaa atgctgcaca gccgccattt tgttttcgat ttattcgaaa aaaattttat       600
     tttgtacttc ggacctaata taatataacg tagtttacaa attttcgatt ggcttcttca       660
     tttggccaaa aaaaaatcca gaaaatccgt ttttttcccc cagttaccta gatgtccccc       720
     c                                                                       721
//
ID   Kolobok-N2_LHu repbase;    DNA;    INV; 3220 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Linepithema humile genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3220
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 358-358 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. TTAA TSDs. Terminal sequences are
CC   similar to the 3'-end of Kolobok-3_LHu.
XX
SQ   Sequence 3220 BP; 1127 A; 526 C; 429 G; 1133 T; 5 other;
     ttaagaggat gctgaagtga cgggcgaact ccgacgcgaa agcgccatca tttcgatggt        60
     actaaaaatg aaatgacatt atcggcgcag cctacggacc tatgccgcgt aggtccgtgt       120
     gtacgcattt gtttgtagtg gtgactcact acactgacgt gtggtctgtg tacgtgtgtc       180
     atcggaagtt tgtaaacaaa cgatgcttgc gcttgtttcc tcgactgaaa tttcgtcgca       240
     aggctgcaat ataatgtccg agaaaacata agcgtataca aggtgtcaaa taaatacaaa       300
     ctaaatatga caaaataata aatgaaaaat atacatataa tactatatat atcactgaag       360
     aaaaatgtca tatacttttc ttacttttat ccttatgtag taaatactaa ataactaatt       420
     aatcaattaa ttaatatata catatacaca tatattcaat aaatagttat ctttattttg       480
     tattttatat gataatgact gaaataatga aagtatatat catttcagtt atataaaata       540
     caaaataaag ataactatat tcaatatgta tatgtatgta ttcaataatt aattaactta       600
     tttatttatt ttgtattwat tacataagaa taaaaatagg aaaagcatat aacatatttt       660
     tccaattaga tatatagtat tatacataca tttttcaaat aaaatatttt atcatatcta       720
     acttatatct attagacacc ttgtataagt ctattttgtc tcgtatgtac atcattcagc       780
     catacgatag aatttcaatt gcgagaaaaa aggttaaatg accttataaa ttatctgata       840
     aaatataaac agaccacacg tgcagtaaat tgctaactaa aataaatacg tatttcttca       900
     aatctgtcag ctgacgttag atcgcctatg acaatatttc ttaaaatctg ccagttcacg       960
     aataaatcgt ctttagctct cttttttcta aactgtcagc tgacgttaga tcgcctctga      1020
     ctatatttat taaaaattgt cagctcacga tagatcgcct ctgacaatat ttcttacaat      1080
     ttgccagttc acgaataaat cgcctttagc tctctttctt ctaaactgtc agctgacgtt      1140
     agatcgcctc tgactatatt tatttaaaat tgtcagctca cgatagatcg cctctggctt      1200
     gtcttattct aaattgccag tccacgacaa agccgcctct ggcttgaaga caagaataag      1260
     aattttctaa tgccagtcca cgagaaaccg cctctggctt gttttattct aaattgccag      1320
     tccacgagaa aaccgcctct ggcttgtctt attctatatt gccagtccac gaggaaaccg      1380
     cctctggctt gaagacaaga ataagaattt tctaatgcca gtccacgaga aaaccgcctc      1440
     tggcttgtct tattctatat tgccagtcca cgagaaaacc gcctctggct tgtcttattc      1500
     tttattgtaa gatactttta ttacgtcata tgctctatgt atatatatat aatgtatatt      1560
     atatgctcca tattatctat attcatatca aaatatcttt ctaagaaatt gacatcattt      1620
     tgtatactct ttttacaata aatgtatatg atatatgcca tattttttat ttctaaagca      1680
     tgaaatataa agatattttt atttttttgt gtctatcatt tgtaaaaaaa tcttgataaa      1740
     agaaacaaca ttaattttgc gacttgcaat aatctgtttc attatatgct tcttttaaat      1800
     acttacaatt agccttattt tatgtgatta acttggtatt taaaatacgt atcaaaatcg      1860
     aaaatgtatt tctattacag tagaaamgaa acattcttgt cttacaacag agagaaatgg      1920
     caaaatataa tattgtctaa agtacagtcc aataaaaact gttaaaattg aacattttat      1980
     aaaaccactg tgattcatga aaaatcagaa ctattatttc aaaaatatag acatatttcg      2040
     actgtgtgtt ttaaactgca ctacacattc aaaattcaca gaataaattt atttctgcaa      2100
     agttgtgtat aatgtcagtg gaaaagtgat ttatttgtta ttacatatac atgatatttt      2160
     accattcctc tctggtgtaa gactacaatg ttttttttct actgaactag aaattaattt      2220
     tatattttga tgtgtatttt agataccaag gtaaacgcat aaaataaggc taattgtaag      2280
     tatttaaaag aagtatatat tgaaacagat tattgcaagt cacaaaatta atgttttttt      2340
     tatcaagatt tttttacaaa tgatacatac aagaaactaa aaataccttt atatttcatg      2400
     ctttataaat aagttatatg acatatacat ttattataaa aatatataca atatacaaaa      2460
     tgatattaac tttttacata gatactttga tgtgaatata cataatatgg agcacataat      2520
     atacataata tatacacatg aagcacatga ataaaagtat tttacagaaa ttagaatatg      2580
     aatgtatgta actaaataat ataaatgttt gcaaaaatgt tgcaaaattt atgtataata      2640
     catacacttt tttatccttc agagtgcctt caacccattt ttttcagccg ggtttcgtag      2700
     cacataacac aaacacacac acacacgcac aactaacaca cacataacta acctaaaaga      2760
     ttctgtatat gacagatagc actgagaact gtatagcgcc tctatcccaa aatcccggaa      2820
     ctaatctata gctctttttt accttattct ttctatattg cacgcatgct ttgcataaat      2880
     ctggaaaagk gtggcgtttt gaaaataagt ctctaagctc tatttttttg gttttccatt      2940
     attgtttcat acgctcttct tcggcacacg ctcttgtttt gcagattgaa gcagtataat      3000
     tttgatataa aagatataat tctttgaggt gacattgtcg gtaaattttc aaaaattttt      3060
     tttatttttt ggtttaaatt tsaccaaccg ccgaaagatt agcatgtgta ctttacttac      3120
     accaaaggat ttgtaattct atcaaagcaa taaaaaacgc cacmcttttc agaaaattga      3180
     agtttcggtc ggtaacaata tgacttcagc atcctcttaa                            3220
//
ID   Kolobok-N2_LMi repbase;    DNA;    INV; 1065 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1065
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3001-3001 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1065 BP; 338 A; 158 C; 217 G; 351 T; 1 other;
     ggggagtact aaaggtggtt tggggtaaaa atgtcgattt ttattttttt atggaaaatt        60
     gttgtttgga gtttttctgt ataatttgat gtatgtttcg ttaattttgg atgactgtaa       120
     gtatttttaa atgattttaa ataacttact gcacaagtaa tttctacggg ttccaagagc       180
     acttgctcag ttacgacaag atatctcggg aactatttgc tctagaaggc ggtgatttat       240
     gttgagttat agtaaacatt ctgctgcaca tccagatctt ctgaagaaat gcctcacagg       300
     taaaactcaa aatgtaaatg agtctttcaa caatgttgta tggaccagga tacccaagaa       360
     cgtatttgtg ggcttgaaaa cactgaagat tggggtcaat gatgctgtga tcaccttcaa       420
     tgatggaaat gcaggcagaa taaaggttct gaagcaactt ggagttcata aggctggcca       480
     taatacggaa gcaatcctac aagaactgga cagacagcga gtttccaagg cagaaattat       540
     ggtcaaaaat acaacagaag ctgcamgatc cctcagaagg agaaagagag tgactgaacc       600
     tcaagaagat aaagattaca aagctggaga gttttaggct gtgtcttcat tcaatagtga       660
     gttttccttt acttaaactt taaagtgcga tttctgaaga actacttttt ttggccaatg       720
     tttcccatta tctcagaaag tacttaagct aaagctctga aatttttacc tcttattgac       780
     agtggtgtta tgtttatgtg gatctacaat ggtagagata accctcttag tttgataata       840
     aaaatatttt ctttaaaaat ttcataattt ttattagacc ttcattaaaa aatttgtatc       900
     ttgactcctg acaaaattag attcttgatt gtagatcagt gaatgtataa gatatgactc       960
     tgtaacctgg caaagttttg ttttgttacc ttggatagtt cctgagaaaa cgggatgtaa      1020
     atatgttaaa tttaacattg tcaggatagg gcattgatac ccccc                      1065
//
ID   Kolobok-N3_DSuz repbase;    DNA;    INV; 753 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-753
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 98-98 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. TTAA TSD.
XX
SQ   Sequence 753 BP; 266 A; 113 C; 97 G; 277 T; 0 other;
     gggggtattc tagtctagaa atttgaaaaa atcgaaaatt tttttttttc ataattcgat        60
     agtttagata tttaaaaata tctccctaaa cggattattc aaaattcaaa ttatttttaa       120
     aattatggct gattaagaga atgtaagtta tacgtgctat tctatcagtt acactgcctg       180
     aaatttaacg taaaacttta aacgcgtttt tctccaaact actttttctg atacggtagc       240
     cataatattt caagttctaa tcagccgatt tacttaaaat ttggcatgaa tattctttca       300
     atatctctct atcgcatgaa ccaacaaaaa attggaattt aaaatttgta atatttttaa       360
     aaaattcgat aaaattacaa aattagtaaa aaaaatcgac cttttttttg agtggccgcc       420
     attttatgaa aaaaattttt ttttttagtt tggctggttc atgacatagc gacattcgta       480
     ctgactaaga atcttttttt tttttatttt tcaaatgacc acaagggtag aaatcatggc       540
     gacgaggaca cggccttttt ttttccccct ctacttcaag gacgcataac tcgatgaaaa       600
     aaaaaatatt ttttttttaa attttatttt atgtactctt ctaagttaaa taaacaaatg       660
     ataaaaaacc cgacagtaaa aatatcaatt gtttagtttt aattaattgt taaaaaaggc       720
     tcgaaactag agcctctaga ctagaatacc ccc                                    753
//
ID   Kolobok-N3_DTa repbase;    DNA;    INV; 736 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-736
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6156-6156 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TTAA TSDs.
XX
SQ   Sequence 736 BP; 251 A; 120 C; 106 G; 259 T; 0 other;
     ggggttatat acagttgtga tagatgaaaa aatcgatttt ttttattgca tattctttaa        60
     gtatatactg ttgagaatac tctcacaaaa attcaaaacg atcggagctt tagaaccgaa       120
     gttgtagcta tttatagcgc actacctgca catcggccct tacaaacttg aaactttaaa       180
     cgcgattatc tcagaatctc gttttttcga aattaccttt gcggtggaca cgattactaa       240
     aaaactatta atccgatcga cacaaaattt tgaccactta tttattataa caatagctag       300
     tccttgaacg aaggattttc aatttttttg aaaacttctt tttttagagc ataaaatcca       360
     aaattttata ccttgaaaaa gtacattttt tgttaaaacc gtcgccaatt tttttttaat       420
     caaaattttt acaaatcctt cgttcaggga ctaggcaata caatatacta acgaaatttt       480
     tttgaattgg ggatttgaga tgaaccgttc ttgggatatg atgtccaccg caagtcacca       540
     tcgaaaaaag acgatcttgg aatttggcca taacattttt attatttaat atttttttat       600
     gaaaaaattt taataagtac ccagaaacat gtactaaaca acgccggcaa aacattttta       660
     ataagtattt tttttggtgt caaaaaaaaa tcggtaaaat ttcatttttt tgtgcggtac       720
     aactgtatat aacccc                                                       736
//
ID   Kolobok-N3_LMi repbase;    DNA;    INV; 1573 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 19.11, Created)
DT   09-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1573
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3002-3002 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1573 BP; 535 A; 264 C; 302 G; 472 T; 0 other;
     ggggggacgt tgatgaaatt gaccaaaaat gtcaattttc gatttatttt ttatttgtta        60
     gtacaactca tggacaataa gttcccaaag tttcaatgtt gaaatcgcat ccgaagtgcc       120
     tgaaaattaa ttaaaagtgt gacgcggcct ccctgccacg cccacgtttt gaagcagcac       180
     ttcaatacca gctcagtgaa caacgattct gtgtattact ttcaaccaaa catgtgcggg       240
     atacatctag aaggccgtga tacatactct ttggttttat agatcatctt tgactctgtt       300
     ccgtatctta taaacaataa caaactagct gcatcgttta tgacgaagca attctttttt       360
     tgccttgtga tactgacgga gatttataca agtgttcgat tctttcttca ttcagttatg       420
     ccacgatcac aaagagtgta taaaaaactg gataaactgc gtttgaataa gttagtgaat       480
     agaagacgtg agaaacaacg acaaaccagc aatgaggcta cgtccgaagt aagaacatct       540
     gctgaaaatg tgaactcgtc tcctagcagc tccaagcgaa aaattagtga ggtgaatggt       600
     gcatactaca gtgatgaatc tcggtttctg gccgatcctg cacttctcaa aaagtgtgtt       660
     catggcaaaa cccagaatcc aaatgagtct ctaaattcac tcatatggaa acgatgccct       720
     aaaaccacat ttgcatctgc tacagttgtc agaattgcaa cttatgatgc agttcttgta       780
     tttaatgatg ggaacgtcgg gaggatgaag gtattagaaa gaatgggctt caagatagga       840
     aattttactc aagacatcct gagaaaaata gatttacagc gcgtctctgc agctgaaaag       900
     tcagttgaag acctggtaaa ggaaagaaga cagacaacaa gaaaccagaa gagaagcctt       960
     gaagggaaag acgacccaga gtacaaatgt ggtgccttct gaagaagtga cataaggaaa      1020
     aaagttaggt tgaactttaa attgcgtttc ctgaaaagtt tgttttttaa agtttatgta      1080
     ccttttcctc agattctatg aatgctagaa ttatgaaatt ttgtacacat atttctgtaa      1140
     acctaataaa cgttgtctca agagcaaatt ttgaaattct gattgcaagc tgagatatgg      1200
     ggcaaagtgc ttggaatttt gcatgaattt aaaattgtac ttgtggaatt ataattaaaa      1260
     aaattatgaa aattctccta tttgacctat tccaaaaacc tcatgagaga agcttacaac      1320
     atataaagag atgaaacaga gaaatttttg tagaaatctc ttgaatactt tctgagaaaa      1380
     aggaacatac attatttttt gaaaataaaa cttcaaattt cattcaaaaa gttgaatata      1440
     tataatcaaa ggattttata tgtaaatgtg ttactttcat gtaaagcgtg gtacaaaatt      1500
     tcattgccat atctccaaaa ctgtggattt ggtgcatttt tgaaatagtg tgtgtttttc      1560
     atcaacgtcc ccc                                                         1573
//
ID   Kolobok-N4_DSuz repbase;    DNA;    INV; 742 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-742
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 99-99 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus. TTAA TSD.
XX
SQ   Sequence 742 BP; 246 A; 127 C; 107 G; 262 T; 0 other;
     ggggttatat accttttttt tttcaaaaaa acgaaaaatt ttttttttgc tgaatcctaa        60
     agtatatccc ctagagaaca ttttcccaaa ttttcataga gatccgaata atagttcgac       120
     gatgacttgt aagtttgtct gctcgacttc aatagttgca tatactcaac gtaaaacttt       180
     gaatgcgatt atctcaaagt cgtgtttttc caaaagtgcc tttgctgtga ccgcgattgc       240
     acaagaacta tttgatcgat cttcttcatt ttttttttaa attattcgta atgattgtgc       300
     cgagttcgtg aacgattcag tttttatgcg ccaattttga ttttgcagat cagaattttt       360
     taataaaatt tttagaactc gaaaaatcaa ctttttggaa aaatcgttac tgtatgcaga       420
     aaaaaccaaa tattcttgaa aataatcgtt cacgaactgg aaataatact atactaataa       480
     aatttttttg gttttttgat atcagttgac ctgctggact tccatcgtgg tcaccgcaag       540
     ccgctataaa aaaaagggtt ccgagagaat tgccataact tcgtaaatta tttatatttt       600
     ttcaagaaca aacgcttgtt gtttcgataa aaacatgtac tatcaataaa taataacttc       660
     agtgtcataa aataattgct acacacctga aaaaaaatcc aaagttccct caattttttc       720
     gctcaaaaag gtatataacc cc                                                742
//
ID   Kolobok-N4_LMi repbase;    DNA;    INV; 1213 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1213
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2911-2911 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1213 BP; 414 A; 228 C; 235 G; 336 T; 0 other;
     ggggacctgg acgtgaaaat gactgaaaaa tcgaaaaaaa ttgcctccat ctgaaagaca        60
     aatttctccc gtttccaaaa atgtatggtt tatttacttt taaatagtta ttatagtctt       120
     aaacgctctt tgaacaaatg tctgcacact ggccacgctg atgcttcagg caaggaatat       180
     caccataaac attccatgcc tgccacagtc atggaaacaa taaagccaat atacagggac       240
     cttgcagata aaaaattact tagcaaatgt ctacatggcc gtacacaaaa tcctaatgag       300
     agtttcaaca gctgcgtgtg gcaacgagta ccgaaaacag tgtttgttgg atggacagta       360
     ctcaaaatag gtgtgatgga tgctgttatc tgtttcaatg atggtgtaat tagcaggaca       420
     aaagtaatgg acaaattagg catccaacca ggaaataata tgatagctgc tctgactgcc       480
     atagatcgtc agcgactagt tgaagctgaa agggctgcgg aagccaccac taaagagtcc       540
     agagtaagga aaagactcct gaaaaagtct gcagaggata aagaagcagc tggccagcaa       600
     gattatgcca ctggaatgtt ctgaaagagg catacggtga gtcaaaaaca ctgtgaacat       660
     tcttttctca ttttctcgaa actacatttt cagaacatta ggtacatata tcttcataat       720
     ggttttagct atgttcacca aatttctccc aattgaagaa tgggacagta tctttgtatt       780
     atgcctaata cattgcagaa atgatctatg tttgtcattc tgtatataat tttaacggta       840
     attttagaca aaatagtaat gaagtgtaat aagggttttt ctatttcctc agatatactc       900
     caaactacaa aacaagaggc ataatgtgtt cctacgaatg ttgacagcag cctgccacag       960
     tctaaatgct attagactga cgatgcacca gaaaatggtt ccagaatgcg aacgtgtatt      1020
     ataaaaacat ctattaggca aaatattgta attcttaaac tataacagat atttcaataa      1080
     atttcctatt acagcttgag ttaatgtcat tcagtgttgg tacaaaatcg caacttcctc      1140
     cgcattgtag atcaagagta atgtgcaccg aaagcaaggt atgaaaatgc agcccgttca      1200
     cgtccaggtc ccc                                                         1213
//
ID   Kolobok-N5_DSuz repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-586
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 100-100 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~80% identical to consensus. TTAA TSD.
XX
SQ   Sequence 586 BP; 185 A; 96 C; 93 G; 206 T; 6 other;
     ggggttatat acacttgtat ccgctaaaaa ataatttttt tttagtttta tgtagtatat        60
     agttttaaga atactcacac aaaaaatcat accgatcgga ccgttagaac cgaagatata       120
     gcattttata gctaactgcc tctggstacm caagcagtga acttgaaact ttaaacgcgg       180
     ttatctcgaa acggtgtttt cccgaaaatg gttgtccgat cgcttttatt ttgttggccc       240
     aaaaaaaaaa ttatcctgtc gctgaacgaa cggtttttta ttaagaaatt tggattttct       300
     tatgccgata aaacttcttc gttcagcgac aagataattg attaaactaa ctaaagtttt       360
     ttacattttc gatttcattc ggtataccgt tctctcggaa tcgtgtccam cgcacttgaa       420
     atcgataggg gtccggcagt ttggctataa ctscgttagt tttaaacttt ttttatattt       480
     ttawatttaa aaaataaaat aatgtactaa tttgaaaaaa cttttcatca taaacaaaaa       540
     ttccagaaat ctagctattt gttgtggtac aagtgtatat agcccm                      586
//
ID   Kolobok-N5_LMi repbase;    DNA;    INV; 1199 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1199
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2912-2912 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1199 BP; 398 A; 196 C; 214 G; 391 T; 0 other;
     ggggggacgt acacgaaaat gaccaaaatt gtgaattttt taatggctct tcatttacta        60
     catggtattg aaatttcaat taccaaatat tacgttccaa ttccgcttct aaatgcgaaa       120
     aaataatttg taatagcttg cacagggcca cgccttcttc cttgttctta attctctcgt       180
     attatctgtt tatgtggcgt tttcttttca atgttgtgca atcagaatgc agggaatgtc       240
     tgtatactac atcaagaagg ctgtggaata acagccctcc caagaaatgt gttcatggca       300
     aaacgcagaa tcctaattag tctctgaagg ccctcatctg aaaacgttgc cccaaaacta       360
     catttttctc atccaaggta gttaatattg cagtttatga tgcagttatt gtctttaatg       420
     gtggcagctc agagaggata agagtcttgt agagaatggg cttcaagccc ggagttttca       480
     ctcgcgacat cttgatgggg attgacactc aacgtatact tgcagccatt aaatccattg       540
     aagaccttgc agagcaaaca agacagaaaa gaagaagcca gaagagaagt cttgaaggaa       600
     atgaggacat tcattacaga tctggaggct tttgaaggtg ggaatggcaa cgaaaaagca       660
     tgtttaactt taaaatgcat tttctcagaa ctaccgtttt cattattcag gtacattttt       720
     ctccaaaaca agaaaagatt tgactgtgat ttttggcatg tcttttgcat tatatatcaa       780
     gaaacatgta tacagagtga atatttaata tcattcatgt atgtcaagat agagaataaa       840
     gaaagtagaa tttctatgtg tagtttttca attaaaaata attaaaccta aaacttcgtt       900
     aaatatcaat aaattgaaat gattctgtgg gtttctttat atgatggttg agattatact       960
     gcaaaaaatt caaggcaatt tcgtagaaac tttcttagta aatggtacct ttgtgaatca      1020
     tgagttcata aacttaaaaa cttccaaaaa atttaaaaat ttcaattaaa attacaaaac      1080
     aatttcagta gatgctttga actaccatca accattgtac ataatttcat ttatgtaact      1140
     caaaaattgt ggattttgtg acaggttata tttgtacttg tttttcgtgt acgtccccc       1199
//
ID   Kolobok-N6_LMi repbase;    DNA;    INV; 1066 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok-N6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1066
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2913-2913 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1066 BP; 370 A; 166 C; 196 G; 333 T; 1 other;
     ggggagttgg aatgccgcaa aatggtaaaa aatcatattt tccgttttta agcttataaa        60
     gtaatttgaa gttttctgct taaaatggtg caaaatttgt taagaaattc taataggaag       120
     tatttttatt tcatttttca aaattatata tgcgcccagg aaaattaccc aacttgcgat       180
     gtttacacat ttaaatcttc acatttccga aaatattaga tatagaaggc tgtggatttc       240
     gctcttcagt tgtagaatct ttgatctttc cgttggtacc attgtcgttc aaatacaagt       300
     cgatgatcga tgtaaatatg tcgttcaaca acctcatatg gactcgtgta cctaagaatg       360
     tatttgttgg cataaaaact ttgaaatggg agtcagtgat tctgttattt cattcagtga       420
     tggtcatatg ggtaggctaa aggtcatgga aagccttggc attgttcctg gtatcaacac       480
     catcagaggt cttcggcttc tggacaacat gcgagtaagg aaggctcagt atgcagctga       540
     atttaataca aaaaaagaaa ggaaggcgca aggagaagaa agcttctagg tgaagaagaa       600
     gaactagaag atgaccctga ttactctgct ggacactttt gataatagaa tagaggtatt       660
     tgtgaatttt cataataaat tactttaatc gcattttctg gcatttgaca tttttagtgt       720
     tacatgtacc tttatctcac aaaccactaa accaataaca ttcaaatttt cagaaatgct       780
     atataacagt taaaagaggc cactgaacta gaatcaagac aaaatctggc ttattctctg       840
     aaccagggaa atttatgtta atttttttcc ataaaaatgg cttaacgtaa aaaattctaa       900
     atattatacc aacaaaaaga aaacattggt ctagttcagt gactaaaata tatgccgaaa       960
     atagctgaca aaatttcaaa gttctgtaag attgtaacag ttcagakaaa aaggtacata      1020
     aagttagcaa atttaacatt ggcgagatag ggcattccga ctcccc                     1066
//
ID   Kolobok1-N1_NVi repbase;    DNA;    INV; 2156 BP.
XX
AC   .
XX
DT   06-MAR-2008 (Rel. 13.03, Created)
DT   10-MAR-2008 (Rel. 13.03, Last updated, Version 1)
XX
DE   Kolobok-type family.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok1-N1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2156
RA   Jurka J. and Bao W.;
RT   "A distinct subgroup of Kolobok-type DNA transposons.";
RL   Repbase Reports 8(3), 174-174 (2008).
XX
DR   [1] (Consensus)
XX
CC   Putative non-autonomous.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           793..1434
FT                 /product="KolobokN-1x_NVi_1p"
FT                 /translation="MCDNRDAKGRFASTHPDKKYSRGRGKKRPRRFLGVTS
FT                 EDEPANKSRPSSSARKIQTPAAEGTSEVRNRLIDINILFPALEELLICKQC
FT                 HGKVQLGESEAQGLGFKIEVVCIECGQLAAINSCRKVGVKNHAWENNRRAV
FT                 VTFRALGLGHAGLSTFCGLMDCLKPMAQSAYDTINEQFSEVCEKVAKDSMK
FT                 TAVIEEKAATETGAPGSNIWRLDW"
XX
SQ   Sequence 2156 BP; 730 A; 328 C; 430 G; 667 T; 1 other;
     ggggacacaa cacctttaaa cttcgaaaaa atcgattttt ttttattgct tattttgaca        60
     ggaaatgttc cgtagaacac gctcctgaaa cccgtttatc aaaaaaaaaa aaaaaattcc       120
     cgcaaagtta taagcaaaat actaaaacaa aatttttatc gttttttcgt aaaattgcgt       180
     atttttcatt ttttgtctaa tacgactaat aattttaatt ttaagtttta taaattcaat       240
     ctgaataaaa tttttattgt aaatgttgaa aatactattt ttttaccgta gtatatacgt       300
     atattatgct ccgcatacat attttagtaa ataaatttga gcgtattgat aagatttttt       360
     tgcgttattt tcgagataaa tttctagttt cgcttcttat ataaggctcc gatggaaacg       420
     tagggacatt tatttgaatt caaatatcgc gcgcccgcgc gccacctgtg ggcaggttag       480
     aatcaatgtg tcggagaagg acagagcgac cgttctgctg ttctgctagc agacagcaaa       540
     tatttcaaaa cacagctgat atagtcctgg gatgtgtttt acactgagta aacacagctg       600
     atgtcttaat actatwaaaa aagctgatat tttttaaaag tgtttttaaa ttaatctaag       660
     tagtgtttgt agtgtttttg gggttatagc ttatagctta taaccctaaa aagtaaaaaa       720
     agtgaagtgt tagtgtaaaa gcagagcagt gaagttattt aaaaaagtgt gaagtgtagt       780
     gattttaaaa atatgtgtga taatcgagat gccaagggaa ggtttgcgag tacccatcca       840
     gacaagaagt actctcgagg aagaggcaag aagaggccaa gaagatttct aggagtaaca       900
     agtgaggatg aacctgccaa caagtcaaga ccttcaagtt cagcaagaaa gatacaaact       960
     ccagcagcgg aaggaacctc tgaggtcagg aatagattga ttgatatcaa cattctattt      1020
     cctgcgctcg aggaactttt gatttgcaaa caatgccatg gcaaagttca acttggcgaa      1080
     tccgaagctc aaggattagg attcaagatt gaagtagtgt gcattgagtg tggtcagctg      1140
     gcagctatca actcatgcag aaaagttggc gtcaagaacc atgcttggga gaacaacaga      1200
     agagcagtgg ttacttttcg tgctcttgga cttggacacg ctggtctatc aacattttgt      1260
     gggttgatgg actgcttaaa acccatggct cagtctgcat atgatacaat caacgaacaa      1320
     ttcagtgaag tatgtgaaaa agttgccaag gactccatga agactgcagt gatagaagaa      1380
     aaagccgcta cagagactgg agcacccgga tcaaacattt ggaggttaga ctggtaattt      1440
     tctgtcagtt ttaacttgaa gattcaacac agtgaccaaa agaaaagata agtataaagt      1500
     gttattatta tcaaggataa aataaccttt ttatcacatt tttataaaaa ttcatgaaat      1560
     gccttttttt ggttgcaggt aagaaaagcc gtacagaacc cagaggtata agtgaatata      1620
     cctcataatt gctgagagtc aaggtctatg tgtgtggaac atagaaaact tggtcccaaa      1680
     ggatttggta agcactaatt taagttacac tttcaacaat tttcataaac tttaaagttg      1740
     attttctcta aatgttgttt ttactgattt cagctcactg tccgtaggat tcaagtgaac      1800
     gaatggtttt ttgggctcaa actcaaggaa gatactttgt acacctgtag ttttggtatg      1860
     aatgcaggga ttttgatttg aatgtttaga gtttatacac aaaaaggtgc cagaataagc      1920
     gaaaaaaaaa atcagaaaaa aactattcgt tcacttggaa tcctacggac agtgaaaaag      1980
     ttcacaaatt cttgcaccga gtgccacaat gggccagcag gaataatgaa ggttttagca      2040
     tgtaaaatta aaggtattta tgctaaatat atctataaaa aattttaaat gatttactta      2100
     aaatttatta atttttctca gagttctttt ttttagggtt taaaggtgtt tgcccc          2156
//
ID   Kolobok1-N2_NVi repbase;    DNA;    INV; 2705 BP.
XX
AC   .
XX
DT   16-FEB-2009 (Rel. 14.02, Created)
DT   16-FEB-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Kolobok-type family.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   Kolobok1-N2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2705
RA   Jurka J.;
RT   "Kolobok-type DNA transposons.";
RL   Repbase Reports 9(2), 482-482 (2009).
XX
DR   [1] (Consensus)
XX
CC   Putative non-autonomous.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(208..444,470..1138,1504..1881)
FT                 /product="Kolobok1-N2_NVi_1p"
FT                 /translation="IATHLILILIFKRRIGSLNAKRKRKYHFIQSAQSVNP
FT                 AIDGGTNVYTVQIFLLCESMFVTYLYTIHVNKIYVYAKVVVAITTMDAIHS
FT                 KWRKPKPKKNRKSATSAANLIKARANVNKTDQNKNATKTSVPNRNSLSEKP
FT                 CTRSVSNNTVNAMQAKLQESATTRKLAFTDMLKSSSDVVDEEENMFININV
FT                 FKVIADKMTCEFCKTNSVNFELGQRNGFAVNLLFICKVCGEVCVDTFSSSR
FT                 TDPNKNNSSFVINEIVVQSFTKVGLGIAALQDVCASVISEVLSKSRKIVHQ
FT                 VHKSLIQIYYRIISSVHPRTYSKCQRGYTFSAVEKVLQKYSSSKTRIEIAA
FT                 AHAVSEYNLGRQRSAEILASITNSKMTSHAEKITTQKDKKRKLSSDKKHEP
FT                 ESKAARISKKYGSKRQESLKVQSEGVTYGAGCF*"
XX
SQ   Sequence 2705 BP; 994 A; 379 C; 461 G; 871 T; 0 other;
     ggtgggattc tggtgttttt cgaccaaaaa atcgaaaaaa tttttatttc tttaaagtgt        60
     tctaaagaat gcgtagaatc tagtatcaag ttccttttat ggggataaat tttatataca       120
     tgaaaagcaa gctatagaag tttaaaaaaa ataatacgtt tttcgatttt ttaataaaat       180
     tctaaatgtg tgcattctag tgcataaatt gctacacatt taattttaat attgattttt       240
     aaacgacgaa taggtagttt gaatgcaaaa cgaaaacgta agtatcattt tatccaatcg       300
     gcccagtctg tgaaccctgc gatagatggc ggcacaaacg tttatacggt acaaattttt       360
     ctgctgtgcg agtctatgtt tgttacatac ttatatacca tacatgtaaa caaaatatat       420
     gtatatgcta aagttgtagt tgcataattt ataatttatt aatttataaa ttacaacaat       480
     ggatgctata cattcaaagt ggcgtaaacc gaagccaaaa aaaaatcgta aaagtgctac       540
     gagtgcagct aacctaataa aagctcgagc aaatgtaaac aagactgatc aaaataaaaa       600
     tgcaacaaaa actagtgttc caaatcgtaa ttctctcagt gaaaaacctt gcactagaag       660
     tgtttctaac aatacagtaa atgctatgca agctaaactg caagagtcag caacaacaag       720
     aaaattggcg tttactgata tgttaaaaag ttcaagtgat gttgttgatg aggaagaaaa       780
     catgtttatt aacataaatg tttttaaagt tatagctgac aagatgacat gtgaattttg       840
     taaaacaaat tcagtgaatt ttgaattagg acaacgaaat ggttttgctg tgaatttatt       900
     gtttatttgc aaagtttgtg gtgaagtatg tgtggataca ttttcaagct cacgtacaga       960
     tcctaataag aacaactctt ctttcgtgat caatgagatc gtagtgcagt cttttacaaa      1020
     agtaggatta ggaatcgctg ctcttcagga tgtttgtgct tctgtaatat cagaagttct      1080
     ttcaaagagc agaaaaattg tgcatcaagt tcataaaagt ttaatccaga tttattattg      1140
     aaaaagtgca ttctttcttc gtacgatgga tcttggataa gcgtgggttc acctctctta      1200
     tggatttggt gcttattgat gtggtcttgt tgtcgactat gaagtgctta gtaaatattg      1260
     ccacatgtgc atgattactg aaaagttagg atctgactct ccagagtttg atattggtac      1320
     aaatcaactt caggcaatta aaaattatga tgctcttccg gctccatgga gttagccata      1380
     gctgaaattc tatggcgaag attgtagtga ttgtaaatga gatatatgac aatgctatac      1440
     aatggtcttt acagctttaa gagaaatagt aaaaagtgct atatatgaaa gattgtcaaa      1500
     tgaagaatta ttagctcggt gcacccaagg acttactcaa aatgccaacg aggctataca      1560
     ttcagtgctg tggagaaagt gctccaaaaa tattcttcat caaaaactag aatagaaatt      1620
     gctgcagctc atgcagtttc tgagtacaac ctgggtcgtc aaagaagtgc tgagatactt      1680
     gcatcaatta caaacagtaa gatgacaagt cacgcagaaa aaattacgac tcagaaggat      1740
     aaaaaaagga aactctcaag tgacaagaaa catgaaccag agtctaaagc tgcaagaatt      1800
     tcaaaaaaat atggcagtaa acgacaagag tcattaaaag tacaatcaga aggtgttact      1860
     tatggtgccg gatgtttcta agtgagttct aaaattttat ataaatttta tgataatagt      1920
     ataaatatta atcaagagaa ttaataattt tatatagttt tacaggatta caggatttga      1980
     gattattatt atctgatgac tgagatcaga ctgatgctta gtgaggttat gtaaatataa      2040
     aataagaaga tattaatgtt aacattaaaa accaaagtac ggatgattat gaaatcattt      2100
     tgtaaagatt tatgtacagt gaaatagatt atttataaaa tattatgaat aacagtactt      2160
     ttttacaaaa acctcatttt ctcagcttta agttttgaaa tattcaaaat gcatcctgcg      2220
     caatgcattt ccatttcatg attccagcaa actacggtga attctttgtt attttaacag      2280
     caaatcatag tgattacatt tttattatag cccatatgat attaatggca aatccaggta      2340
     catcaaaatt tattgtaatt taactcactt tattattaat tttatgcatt caaatgacat      2400
     atttatttat aaaaataaaa aaatttattt gaaaatctaa tcactataat tctttcacat      2460
     cggcttaaag attacactca aattttctgg aatcatgaga tgcaaatggg ttgcgcagga      2520
     taccttagca atatagctaa attataataa aaaattctgc ttcatctgca ttatccaact      2580
     aaatattaga taaattgggc tgaaaattta cataaaatca tattttttta tatacataat      2640
     gaggtcaaaa tcttagctga ctagatctaa agggggaaaa aaagtgaaaa caccagaacc      2700
     ccacc                                                                  2705
//
ID   KolobokE-1_AP repbase;    DNA;    INV; 6605 BP.
XX
AC   .
XX
DT   14-FEB-2014 (Rel. 19.08, Created)
DT   15-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Kolobok DNA transposon from Pea Aphid.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6605
RA   Kapitonov V. and Jurka J.;
RT   "KolobokE DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 14(8), 2267-2267 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 6605 BP; 2454 A; 913 C; 1000 G; 2238 T; 0 other;
     gaggacgtcg caccggcatt tttcagtatt aaaaacacgc ttgcgtagat tcaaaattac        60
     ttgttcctga gtggttttag agctaagaca cctattaaca aaatagaaca aaacaatatt       120
     ttgaagagca tctcatcggg gttttataaa atatttagtt taaaaaataa tacagccatt       180
     taaaaaatca aaaataaacg ttttttataa atgtaatatc aaacagtgta attaacataa       240
     tgaaaattcc cgatgagatg ccctcctaaa tattgtaagc tttcatttcg ataataggtg       300
     tttttactct aaaatcattg tagagtggtt gatttacaat ctaagtgtgc cataaacgtt       360
     ctaactagtt cttagtttta tgccgtaaac agacaattta cggccgacta gtgctgctct       420
     gtttctatta cggcagcgtt cgataacgtt cgttaccccc cgacccgcta caattaccgc       480
     ttcgaagttc aaaatatttt tcttttctta tcgggaccgg gcaatggttt ataaataaat       540
     acccggaata aaatataaaa taatcgtcaa ctgcagaaag tgaatcggcg atgaatatta       600
     tttgctcgtg gtcattgaag acacgtgaac ttgtattcac gacttaattt gtacacgaaa       660
     tattttattt taccgactac ctatctacta ttttgtaata gtgaaatatt agcatgggaa       720
     acaaaaaaaa taatgttaaa cgtgttacca aaaaacgctt aactcgtatt ctggtaaatc       780
     gtcgtaaaaa taatgacaat gaaaggtaag ttaaatatta aaataagtat taaaatttat       840
     aaattatagt agctggtagg tcgtaagtac ctactattta ttttaattaa agtttcaaaa       900
     cgaaaacata tttttgttat ttgtaaagag aaactgcttt atttaaattt ttattaatat       960
     tatggtggtg ttgctacagt gatgtttgct ttagttcacc acaaatagcg agttgtgtag      1020
     aatttacagc agagacaagt acaccaaaat tgaaattcca agtacaaaac caatttgatg      1080
     aacctgaatt agcgtttgtt aaacttacgg ctactgaaat aaattcacct ttcgagtaaa      1140
     atttatatta aatcatattg tagtttttta tgtattttaa atgaataatt gtaggtattg      1200
     aaaacaatat ttttattatg aataggtgtg ctaaaatcca ggacgaattt attgactctc      1260
     acgaactgac tgtcagttca gtctcagaag tagataaaag cctcatgtaa gaatgttgtt      1320
     accgtccgta atgttttatg aattaaaatt aaaattaatt atctatatat ttatctagtg      1380
     aaagagcagg tgaaataaat gggtgtagga ttgtagacat cggatatgtt tttagtcaaa      1440
     tacttgattg tactcacgaa ggaatgtttg gatgtaattt tatgaacatg gaatatatat      1500
     cggaatttag gagaggttac tattcacaat ttttattcaa atgtaaaatg tgcaatatta      1560
     aaaaaaaaat atactcttca aaatttgatg aaaatcttca aaatcaatgg tcaataaata      1620
     aagctcttgt aaatagcact attgcaatcg gtaattaaaa tattgattta aatataatgc      1680
     tttgcgattt tatttaaact aaatagtaat ttattgtagg aattggctat acccaactag      1740
     ccgaattttc tgccggttta gaaataccat acatgtctgc aaacatgtat cattcatttc      1800
     agtcagttct ccaagatgat ataaaaggca cggcttggtc agaaatgaaa gcggcaggag      1860
     atgaagaaag aaaatatgct atagaatctg gttctgttga taatgatggt ataccactta      1920
     ttacagttgt tgcggacgct caatggtcca agaggagtta taaaacaaaa tacgacgctt      1980
     tttctggagt agtaagtagt tagtagtaat ttaataaagt acaaattcaa ttaaccaagg      2040
     ctgggcaagt taatgatatt ttttaattga gttaagttag gttaaactaa aatataaatc      2100
     aagttaaaac ttaaaagtta accaaaattt aatattaact ttttaactca agttaaatta      2160
     cttaaaaaac aatttcttgt tttcatctag gtaaaattaa aacaatcgat acctaaaatt      2220
     gttcgtatta ttagaccaaa gaactattat tattttattt tccaaaagca ttaggtaaca      2280
     gtccacacat ttattagcat acttttaaaa tatgtaccat caatttgcgc gtccacacca      2340
     ccggaaatag gaatgataat aatcggcgaa aacgtcgaat taataataaa ttatccaaaa      2400
     ataaatgcgg tattactaag aaccataatc ataaaaaaaa ttaacttatt aagttaaaaa      2460
     gttaaattaa cttaacttta acttattaac tcgttaatgc ctagccttgc aaataacttt      2520
     taattaaatt aatagaaaaa tctataactc atcttaacta atttttacgt gactttaggc      2580
     gagtataatt ggatacaaaa caaaaaaaat actttttgtc ggaatcagaa accggtattg      2640
     cgtaatttgt gaacgtgctt ctaataaaaa tattgaaaaa ccgatacaca catgcttcct      2700
     gaattggaaa cacggtgcta cgagtattga agcggacgga gtagccgaag gttttagcaa      2760
     gagtttcgaa atgcatggcg ttaaatattc aaaattaatt ggtaagatac aattacgttt      2820
     attatatcaa aaaaatgtat gttataaaca ttttatgttt ataaacaaaa tttgactcac      2880
     aatttttttt ttattattat tacaataaaa atgagttaat taaaacctgg tatcaaattt      2940
     agacgctcgt aaaaatttat aattgaatca cactttttaa atataatatt tattatacat      3000
     tcttcaaatt ttattaattt ttaacaacaa aataacttta aattttcgcg attttatcat      3060
     attttgtaaa aaattttaaa aataaaaatg aattgtgacc tacgattttt ttaatggtga      3120
     taagtacaac ttattaacat tcttgtattc gtcactccgt tcagaatcga aaaacttaaa      3180
     aaaaaatgtt ttaggtgatg gtgacagtag tgtcacaaaa aggttaaatg aaatactgcc      3240
     gtatggtccg agcctaagag tcgaaaaaat tgaatgcaga aatcatatgc ttaggaacta      3300
     ttcccaaaaa atgtcggcac tcactaaacg gacagaattt cctattgcga taagaaaaaa      3360
     aattgctgat aacctcgtta ggcttagaac tgatgtaaca aaagctatac agtacagaaa      3420
     atctgaggaa aaaccattac aacaaaaaat tttaagtaag tacctaattc agtggcggtt      3480
     cgtggggttc attgaaggtg gggcacaaat acctaattta tgttattatt tattacattt      3540
     tatttattta tttggggctt tttagatctt aaatacgaca taacaaatgc accaaaccat      3600
     cgactttttg attgccataa aaaatgtgct ccctattttt gcgaaaaatc tgcagataac      3660
     tcagttggta actgcaagtc aaatgaaaat gatggtattg tcaaagaaat taatataatt      3720
     gtttctcgtt tggctaataa tgcaaaaagc cttatattgg acgtagacaa caacatctgc      3780
     gaacaattca atagcgttat taataaattt cttggtggca aaagaataaa ttataatcaa      3840
     aggagttctt ataatacaag gatattagca gccgtggtta gttttaattc tagcgagtat      3900
     ttaagagctg taaaaaaaca tatcactcaa acaagtcctg gtaagataac ctttttgttt      3960
     tgaaaattaa tattatataa ttcattatta tataaaaatg taaaattggc ctattaatta      4020
     atttttttgt taggaaaaac ggctaaatca tttttaagtc aaataataaa aaaacgttct      4080
     gcttgccaaa aacgaagaca actttcgacc aaacttaaat ataaagtaaa gcgaccaaaa      4140
     gctagttcca aaccagacga acactatggt aacgcagaca tattagacgg tatgtaatga      4200
     taagctcaca tattattgta aattgtaata aataaactta attataccta attcataact      4260
     gtcatatttt tacgttatta taggtataag agaagtcgat gatccatcgt ttgtaaaaga      4320
     tatggaacag tttctgaagt aggtactata ggcacctatt acatataaac aatgataaaa      4380
     atactgaata cccaatacct agctattatt cgttttattc aattattttg tttctaaagg      4440
     actttatatg acgtcaaccg caccacagta gaagaaacta caagatatca agccgaaagt      4500
     gaaaactgga gggcagaaag gatgatccga ctcaccgcta gtaactttgg tcgtgtatgc      4560
     aaaatgcgtc gcaatactag ttgcaaaaat atagtgcatt caatcttata tctaacattc      4620
     aatagcaagt tagtttaatg ttacatttaa aataccgcac tataactaaa atgtgcatta      4680
     ttaatgttaa gaatattttt attaataata tatagaacaa acattagatg gaaacctctt      4740
     tacaacggaa atatcagttg gtaccgagcg atcccgttat aaggagtttt actgtcttat      4800
     atgttgtatt actctttatg taaattttaa gcctaatggg ttaggttagg tacctaacca      4860
     tagaacaata acgtattagg tacgtggtgt aaaatttaca tttaaacatt taatgttatt      4920
     attgttatta tgttattatg gttaatatta ttatagataa atatatacac cagcatatat      4980
     ccggaaacaa tatttacggt atttaatgta tgatttattg ttttcgtaaa acgactgttc      5040
     caaaaaatgt cattattaat gttaagaata tttttatttc tatttttttt ttattcaata      5100
     gattctatac tttttttatt ttataggtct gtccagtatg gtagggatat ggaagacgag      5160
     gcaaaaacaa aatttgaaga aaatttcggt tacaaaataa aaaaatgtgg tcttttcatt      5220
     gatacgcaaa ttccatattt agctgctagt ccaggtttga catgatttaa ttttcctact      5280
     attttcttta gtaaataata aaataattaa ttaattaata ttacgatatt tatttttcaa      5340
     aattatttta gatggaatta ttggtgatac tgctatcgtt gaaattaaat gtccttatgc      5400
     tgcaaaagac acggaaaatg agatagaggc tgtatccact ggcaaagttt gtttcctact      5460
     aaaaaatacc tttcattatt tattttttaa aacctaatat ttattataat attaacacag      5520
     ctgaagtatt gttccatcaa agaaaacaaa ttggtattaa gtaaaaatca tatttactac      5580
     taccaaatac aaggacagct gcatatttcc caaaaggaac aatgcttttt tattatatac      5640
     acgactaatt ggatgtcagt ccagataata aaatatgatg atgacttttg gagtacacaa      5700
     atggtcgata aattaaaaac gtaaacattg ttagaattaa tattaattaa gcttttgtta      5760
     aatccaatat ttagttttta aaaaaaatta gtaagtatat caatattaaa ctttatactt      5820
     ataggtttta tctaaactgt ttgctgccag aaatcgtgga tcctgtttat aaatatagat      5880
     tcatgaaatc agacataaga gagtcaaaaa taattttaca acaaatgaaa atctcaaaac      5940
     aactatttta aaataaaatt tgatttatta tattattatc atactaatca tattgttaaa      6000
     aaaaattatt ttagtcgttt ttatttgtat acgctagttt tagccatttg aaatattgta      6060
     agtacgtatg tattattatt atgcattttt attaataatt atcatattaa aaatccatgt      6120
     ttaaaaaaag aacataaaag atgaaacacg ccagctgatt aatattaatt taattgcgct      6180
     gtatttattt tatttaccat ttattagatt ttactataag tattatattt aaataagtaa      6240
     taattcaata acttcaaatc aagctatgtt ataatacagt ttctacgatc tatatgttgg      6300
     gacataaatt taagtaaaca gtatcttaat ttataatctg tagttcgtag gtacgcgagg      6360
     gtattgaaaa tattacggcg gcatttgcgt ataatgaatt atataatgat acgaatggta      6420
     ctggacgaac gttcatagac aaataaacgg cgctcccgaa gtcccgaacg agcactcgtc      6480
     gccgccgtcg gccggttgcg aatagtaggc gtgacttaaa cgccgcgcgc ttgcggatcg      6540
     tgaaaacacc taacagcgca tcctctcggt cgttgcatgc gtacagcttt gggtgacacg      6600
     tcctc                                                                  6605
//
ID   KolobokE-1_TC repbase;    DNA;    INV; 4974 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.08, Created)
DT   28-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Autonomous Kolobok transposon from a sea snail - conceptual
DE   consensus.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE clade;
KW   KolobokE-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4974
RA   Kapitonov V.V. and Jurka J.;
RT   "Kolobok transposons from the KolobokE clade.";
RL   Repbase Reports 14(8), 2266-2266 (2014).
XX
DR   [1] (Consensus)
XX
CC   The KolobokE clade of Kolobok transposons is composed of diverse
CC   families identified in insects (beetle, mosquito, pea aphid,
CC   ants, bees) and molluscs (owl limpet). The clade is supported by
CC   the TPase phylogeny. Unusually, KolobokE TPase is fused with the
CC   ~300-aa alkaline exonuclease (lambda-like). The same nuclease is
CC   encoded also by the ISL2EU DNA transposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1494..1577,1746..1797,1857..2789,2849..4173)
FT                 /product="KolobokE-1_TC_1p"
FT                 /note="TPase and lambda-like exonuclease."
FT                 /translation="MARSKGNGRTLSSTKRNKGNIASLCKYWNSKKGLNVE
FT                 GTSPNTSEITGNRIVNFAYLFKNIANIAAHGHRFGCTWENLKVIKEVRNCL
FT                 FSKFILKCNMCHGEFHLHTQDPFGNERNLNEAAVNGIIAIGGGYYNLEEFL
FT                 CCLNISSMSYPTYKKYENKVSEDFSKAAVATMKEAAEEEILHAKEIGAIDQ
FT                 DGCALVPVVADGTWGTRSNKSNFNSLTGAAAIVGAHTGKVLYLGVRNKFCM
FT                 ICSRQKERSPTDHVCTKNHIGSSGSMESQIILQGFKTSVEMYNIKYNTLIG
FT                 DGDSSTYKKIIEGRPYNNLTVEKIECRNHLLRNLRGKLKSLVGDRKFPLQN
FT                 RKLLEGKIMRLSTGIRAAITYRKKEADKVSAAGRLRQDILNCAQHVFGEHK
FT                 DCANYFCQRKTDTNTWDTISTELKGQIQNILRTLASHSRSLLCDVDNNVVE
FT                 GFNSIVAKFIGGKRINYSLSQSYETRCMAAVVSFNSKHAHMYLGRISKRSR
FT                 NRLLETMEIRRRRKAMRTWEMARKKGRKVQATNDKGNADYGENCEKPDMTP
FT                 EIFEENKKAFLQGLEKTDAERVQLQESTRLQAGSGQWLEERRKLLTASNFG
FT                 RVCKMNATTSPANTIKSLLYQIKTLNVPSINHGKVNEEKARLQLMQQENVT
FT                 IVSCGLFVNKKWNFLGASPDGLILDLDSIVEIKCPYSAFQKKMSFEEAVIS
FT                 KKITFWKQEAATRIFKINKNHDWYYQIQGQLQIADKESCLLGVWLGDNYPL
FT                 KTQWVMKDNEFWEEKMLPKLQRFYFHSLLPELVDPRHIRNMPIRDNK"
XX
SQ   Sequence 4974 BP; 1728 A; 771 C; 899 G; 1575 T; 1 other;
     ggctaggtta aacgtattcg tcttatggcg ttttcaatgt aaaagaattg tggctgtaat        60
     taagttattt gaaaagatat caacatcgtt tcaaaactca atgtatctta gaaatgatat       120
     ttacaaaatg gccattagaa aattttaaaa aatctagtgc tcaataaatt atggctattt       180
     aaataaacac gatttcgaaa taatacacgt attaagacac caagacttca aaatgaaaaa       240
     actctccggc caatcgatag agatttttat tttaaacacc ttggtatttt taattttttt       300
     tctgttatta aaaataagct taatatcgcg aaaattttaa ttcattggaa gcacaaaatt       360
     ccttgggcga tgatttatag cagttgacta gacaaatccg cagaaagatt tacaatggga       420
     ccggagggtc tgggtctgag taacagaccc aagagtaggt acctgctaaa aatgattaga       480
     tttgtcacgt ctcactttct tgttagtctt attcatcgaa acaataatga cttttgtttc       540
     cgttgaaaaa ggaatttggt cgagattaac aaccaaccca gagaaagtta aaccatgtaa       600
     ccagaaaagg gattakccgc ttaataataa tttaagggtt tcacgttatt tataattggt       660
     attacaatag gtaacttgtt tatctaataa tttctttatc taagagtggt atttagaaag       720
     cactttattt gtgaacacac accaggctaa ttttctatta cccagaaatt gttaacgtaa       780
     atttaattgg ttttggtttc tctttttcaa aaatcaaaag tcacttctag aagcacctaa       840
     caaaacccta actaacgtgc tttgtttact aactttaatt taaaacagta aactcgtatt       900
     gcgtgactat ttcctaaact ataacgcttt ggagctattg tgttttaata taaaaattga       960
     taataatgat aataattata gcattaaaaa aattcgcacg actttgtttc gtcaaaaaat      1020
     gacacctaca atagtgagca aaaaattttg gacacttttg tcatttcatt gtcagaaaag      1080
     atagagtagt attgcccacg attatttctg cttgttgttt ttgacagtac actttttagt      1140
     aattaaaaaa taaaattaaa attaagtaaa aaaagatgaa tagcaattgc ataattgtgt      1200
     tcttcgacct aaagattttt ttgttaattc tctactctac cagtgaccat aggtatttag      1260
     agtgttattc gttattatac gttattcgtt tttataaaat ttacattctt gggaaagtat      1320
     agttattgct atttaaaaga gaaaacacca accccctaca ttggaatctc cctaaagtgg      1380
     tagggggaag cttctgctaa tataagacgt gcaaaactat ggtaattttt aattactgtt      1440
     taacagttcg ctgtgctatt gtgtggagtt tgtgcttagt gacattttac aaaatggcta      1500
     gatccaaagg caatggaaga actttgtcta gtactaagag aaacaaaggg aacattgctt      1560
     ctctttgtaa gtactgggta agtcacattt tttatacttt actatacttt atactttcat      1620
     attttaaaat atatttgaaa aaattgaata aacagaaaaa ggtatttaac gaactgaatt      1680
     ttgtatgatt attagttttt gagatttagt aaaaataaac tttttatttt tgaatttgtt      1740
     tttagaattc aaaaaagggg ttgaatgtgg aggggacatc acctaatacg tctgaaagtc      1800
     atttgagact gcttctaata acccatcaac atcaaacgat ttaaaaaatg ttgaagttac      1860
     tgggaaccga attgtaaact ttgcttacct tttcaaaaat atcgccaata tagctgctca      1920
     tggtcacaga tttggatgca cttgggaaaa tttaaaagtt ataaaagaag tgcgcaattg      1980
     cttattttcg aaatttattt taaaatgcaa tatgtgccat ggtgaatttc atcttcatac      2040
     acaagaccca tttggaaatg aaagaaactt gaatgaggct gcagtaaatg gtataatcgc      2100
     cattggagga ggatactaca acttggaaga attcttgtgt tgtttgaata tttcttctat      2160
     gtcataccct acatataaaa aatatgagaa caaagtttct gaagattttt cgaaagctgc      2220
     tgtagcgaca atgaaagaag ctgccgaaga agaaattctt catgcgaagg aaattggagc      2280
     catcgatcaa gatgggtgtg ctctagttcc cgttgtagct gatgggacat ggggcacacg      2340
     ctctaacaag tcaaatttca attcgctaac tggagcagcg gccatagtag gagctcacac      2400
     tgggaaagtc ctgtatctgg gagtcagaaa caaattttgt atgatttgtt ctcgtcaaaa      2460
     agaacgttct cccactgatc atgtttgtac aaaaaaccat attggcagtt ccggtagtat      2520
     ggagtcgcaa attattttac aaggatttaa aaccagtgtc gagatgtaca acatcaaata      2580
     caacacgcta attggagacg gagatagtag tacctacaag aaaatcatcg agggacgccc      2640
     atacaacaat ttgactgttg aaaaaattga atgccgaaat caccttttac gcaatctacg      2700
     tggaaaactc aaaagccttg tgggtgacag aaagtttcct ttacaaaata ggaaactgct      2760
     ggaagggaaa atcatgcggc tgtccacagg tataaatagt aaaataagtt ctccatttta      2820
     taaaaatcta atttatatgc aatttcagga ataagagcgg caataacata caggaaaaaa      2880
     gaagcggata aggtttcagc ggctggaagg ttacggcagg atattttgaa ttgcgcccag      2940
     catgtgtttg gagaacacaa agattgtgcg aattatttct gccaacgaaa aacggataca      3000
     aacacatggg acacaatttc cactgaacta aagggacaaa ttcaaaatat tttgcgcact      3060
     ctggcaagtc actccagaag cttgctatgc gatgttgata ataatgtggt ggaaggattt      3120
     aactccatag tagcaaaatt cattggtgga aaaagaataa attacagctt gtcacaatca      3180
     tacgaaacaa gatgtatggc agctgtagtt tctttcaaca gcaaacatgc ccacatgtat      3240
     cttggaagaa tttcgaaaag gtctcgcaat cgtttactag aaaccatgga aattcgaagg      3300
     cgtaggaaag caatgagaac gtgggaaatg gctagaaaaa aaggaagaaa agtgcaagcg      3360
     acaaacgata aaggaaatgc tgattatgga gaaaattgcg aaaaaccgga tatgactcct      3420
     gaaattttcg aagagaacaa aaaggcgttt cttcaaggat tagaaaaaac agatgccgaa      3480
     agagttcagc tgcaagagtc cacaaggctt caagctggct ccggacaatg gctcgaagaa      3540
     cgcagaaagt tgcttactgc ttccaatttt gggagagttt gtaaaatgaa tgctaccaca      3600
     agtcctgcca atacgattaa gagtttgttg tatcaaataa aaactttaaa tgtgccgtcc      3660
     atcaaccacg gaaaggtaaa tgaggaaaaa gcgaggctcc agctaatgca gcaagaaaat      3720
     gtaacaattg tgagctgtgg tctctttgtc aacaaaaagt ggaatttttt gggtgcttca      3780
     ccagacggtc taattctgga tttggactcc attgtagaga ttaagtgccc atactccgcg      3840
     ttccagaaaa aaatgtcatt tgaggaagca gttatttcaa aaaaaataac tttttggaaa      3900
     caagaagcag cgacaagaat tttcaaaatc aataaaaatc acgattggta ttaccaaatt      3960
     caagggcagc tacaaatagc tgacaaagag tcctgcctct taggtgtttg gttaggagat      4020
     aattatcctt taaaaacaca atgggtaatg aaagataatg agttttggga ggaaaaaatg      4080
     ttaccaaaac ttcaaaggtt ttacttccat tccttgttac cagaattggt tgatccacga      4140
     cacatcagaa atatgcccat acgtgataat aaataggtaa gcatttttta tatatggaac      4200
     ttttttccgg ctcttatttt ttaggtctat tctttatcca tgacggcagg actagtttat      4260
     tgcctaattt ttatttttag cttttagtac atagttaggt atgttgtaaa tagctaggtt      4320
     cttgtaaata ttgaaatttc tgttaattaa ttaattttta ccaccatttt tcattgtaaa      4380
     tacatgaaag tctaaatttt tcatttattg ttatttttta atttttaaca tatagataca      4440
     tagtttttag gtttttgtaa atagctagta tgatgtaaat atagaaattt ctgttagtta      4500
     aaaaagtatt ttgatttttt tttgaaaata tatgaatctt tttttacgca tgtttcattg      4560
     cataacacct acgttcctaa ctacagtcaa atcttttaat tcgactatat gttaatcgaa      4620
     tcttaaatta aaattatatt tattaaacta attgagtaat ccgaaaaatt gacaatccag      4680
     agaacgcctt gaattagttt ctttttatcg tgatttacca gtattttaga acgttttttc      4740
     tttttcatta aataaacact tcaaatttaa aataaaactg ttcaaattgg gaacatcttc      4800
     tttgggcata caaatatcaa gtaagaccaa tgtaggtaat gttgtaaatc acaaatacat      4860
     tctttgttgt gacatcagct taaccacaga attttaagcg ccctaagccg gtcgggccga      4920
     cagttttatg atcgacaccc cgagagcgag ttcgagattc cttttaacct agcc            4974
//
ID   KolobokE-2_AP repbase;    DNA;    INV; 8213 BP.
XX
AC   .
XX
DT   14-FEB-2014 (Rel. 19.08, Created)
DT   15-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Kolobok DNA transposon from Pea Aphid.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-8213
RA   Kapitonov V. and Jurka J.;
RT   "KolobokE DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 14(8), 2268-2268 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 8213 BP; 3062 A; 1104 C; 1140 G; 2907 T; 0 other;
     gaggatgtca cactagttat tttcagcggt aaaaacacgt ctacgaaaaa caaacgaaaa        60
     ggcattaaaa agtgttttta gagtaaatat acttattatg aaatttatag agaacaatat       120
     ttgggaggga acctcatcgg tgtttttcga aatattaagc agtaaaaaag ttacagttac       180
     ttaaaaaatg taaaaaaaaa gatttttgtg cctttaatat cgagctgtgt atttgtatta       240
     atacaaaacc ccgatgaggt tccctcccaa atattgttct ctataaaatt tattataggt       300
     aattttactc taaaaccact ttttaattgc ttttcgtttg tttttcgaaa gcgtgtttac       360
     gtcgttagat ttgatatttc attgcaatag tgtgctgcca cctacatgcc gttgtgacgg       420
     aggtcgcaaa ttccccacta cgccaaaaag tgactgctcg tacggtcgcc ggtaatcggc       480
     gacgagtgcc gacgacacta cgacaaacgc ttctgaaaat agattatgcg ccgattatta       540
     acatactata tagactatac taattgctgt atttccagaa atatgtataa aaattaaaaa       600
     taaatattca agtataatat attattacta taactattgt aatactcgaa ttatcgtaaa       660
     gtaaactctg aaaaataacc atttcttctg tatgattcaa cgtgatcaca tcagttgtga       720
     acatttttat catttttttt tataattttc cggatctaca tagttcatta tggcaaataa       780
     aaaaaatgtg ctaaagcgta aacgatcgac taaaaaaatg gtcactaaga cacttgcact       840
     tagacgatct aaaaaaccaa ggtaagtgcc ctaaattaca tattatttat tttaaaaatt       900
     aaaaacattg tattaccaat ttaaatttaa ttttataagc ttagtctccc ggtctaaaac       960
     gaaaaaaatt gttttgttat atacatacat aattagtgtc gagtcacgac tgcacctcgt      1020
     catagagaag gtcactgatc atttgtaaaa tgccgataaa aatttatacc accccaaaaa      1080
     tattgaacat ataaaacaaa gaaattattg aatttaaaag tgagtcactg taatggattg      1140
     tgttaaattt gaatccaata atataatatc attgaataag aaaaacgatt ctgagcgaag      1200
     acggtcagtc agtctataat atcttactaa gtgtatttga tgatattatt gtgaataaag      1260
     taattaattt tagtattagg catttgtatt tactatagtt ggttaaattc atttttacca      1320
     aaaaaattac attttaaaat gccattgcgt atatataaaa tatactctaa aagtttcata      1380
     tactacatga gaaatccaat attgtaaaat tatgaatttc aaacactcat aaaaatttat      1440
     tttttcttgt ttttagatat tttatttttg ataaaagtag agaattttat gttatatctt      1500
     gtattgcatt ttaaaaagaa aaatttttat gaattttgaa ctcaaaataa ttggcaaatt      1560
     ttcgtcattt ttacgtattt tgtcaaaatt tgaactttaa atgcttagaa aaaaaatttg      1620
     tgactacgga tttttaatat tttacatctg cttttgaaac aatatatatg gagcctgcta      1680
     ttaaattttc aagagttttt acctaacaaa taaaatgtta ttgatattta tagaaaaata      1740
     acgtaaaaaa attggacact gataaaaatg cccgtaaaca gctcaaaata agtcaacata      1800
     ttttaaaaaa ggtatactgt gtagaaactg cttatataaa cattcagttt aaatttcatg      1860
     tatctaccgt aatttttttt agagttacac caaaaattaa aatcgatttt gttcaaaatc      1920
     ggttttgcgt aaaaattccc gtttttttcc ttaatttttc atttgttttt catggccttt      1980
     tcaaaaacta ttgagaattt taaattttga cctcccaaaa gtaccaacta gattcacttt      2040
     ctaatcgaac aagattctga agttgaaaat caaagcaata tttcgactac taatcgtgta      2100
     cacagacaca aaaaaaaata aataaaaaat aaaaaaaaat ataaaaaaaa aataaaaaaa      2160
     cacacatcat tgtaaaacca atacattcat cgctccgctc agaatctaaa acgtgtttga      2220
     atttcatatt ttaacacatc aatcaaacta acttatgact caatgacgag gttcacttga      2280
     catctactat atagcagagc gattatactt actttttttt ttttaaatta attaaactct      2340
     agtggtgttg ttgaggacag agatcctgaa gaatcttcat ttcaaattcg attcaacgat      2400
     attgatcaaa attcgaggta ataacatgag tgtgtgtgtg taactaccta ctaactttag      2460
     tacattttat attattcata attttgacac aatataattt tacctattaa attacgaata      2520
     agtattacga tatttagttg tattatttat gaatattatg tcaaaattcg aaatgcttat      2580
     aaaaaaaaat ttccaacttt taacatttca tgtattttaa ctacaaaata gcaaaataat      2640
     agtttatttc agttgaagaa taggtaagtc tactatcata actatcatat attatgacat      2700
     attagttata actaatacaa tttatttgtt tggtaaaatt gatctatact gactatactc      2760
     ctatattatt tatagtgaac ctagtacctc cactggctct attaatgacg tagaaattga      2820
     aaacataaac tttgttacac caatccagta agtaagatta ttaaaaatcg ttaggtatct      2880
     tattatatat tttttcactt agtatataat tttcattttg taaattgttt tgttaattag      2940
     aattttgaac taacctattg tacattagta ggcagtgcca aacattttat catgtatttt      3000
     tttttgagac ttcacctttt aagaaataat gaattaatta aaaactttag gtttacttcg      3060
     acacctgttc ccaaagttga cccaattgtt gaatgtaatc aatcttttaa tttaaatgat      3120
     attgaatcct acatattacc atgtgttgag gaaaatagta atactgagta agtatcagaa      3180
     aaaaaacatt aatttctttg attattctta tttcaaattt cgttttcgat tttattatta      3240
     tttttatttt ttttatattt agggttcttg ctgaccattt atcgggtaga cgaattgtag      3300
     atgttgatta tatttttaaa caaatccaaa acagttcaca tggtagtgga ctagactgtt      3360
     cttttttgaa tatgtctttt gtctcagaaa aacgttatgg ttttttttcc aaattcaaat      3420
     ttcaatgtaa aatgtgcaac attgtaacag ttatttcttc agaaccatct gataaatcat      3480
     atcttcccat aaataaagcc gtaacaaatg gaagtgtagc aattggtaag ttgaacaaat      3540
     aataatattg atttacttaa tatataccta ggtacctaaa ttatagaggt aatattatat      3600
     taccttatta tttttttttc tttatgttta ctgattaaac cactatcgtc atttgatttt      3660
     caaatgtcat aaatttgtat aatatgttgc cattttaaaa tcaaaatgtt atagtgttct      3720
     aaccaataaa tataagggtc taaaaaaatt aaaatattat acactattag aaaatcatta      3780
     atctaaaatt ttgaaaaaaa aaaaattgaa aatagtcaat acagtttttg ttgtattcga      3840
     ttttgtcgtt ggttgtaaaa gttatacatt gttatatatc atcttcaagg aattggccaa      3900
     aaacaactag ctgaattatc agctgcaatg gaaattccgt gcatggcaag taccactttt      3960
     tttaaagaac atgaaaactt aagctctagt attcataact cagcgtggga ggaaatacaa      4020
     aaagccggag aggaagaaag gaaattagca atagaagcag gagatgttgg cgatgatggg      4080
     ataccgtttt gtaccgttgt agcagatgga caatggtcaa aacggagtta taaatctaaa      4140
     tacgacgctt tatccggagt ggtatataca atattttgta ctttcgttat atatttaaag      4200
     cccattaaaa tatgattttc aaactttaaa aatttaagta gtaggtacct tgttttttat      4260
     tttataagta aattttattt gaaatatttg tctccctaaa ttaatacaaa taattcgact      4320
     attcttagat aaatcctgca gtgctaggta aattaatttt tgtcatacaa tatacattta      4380
     taagctcatt tatatattct acattcataa ttattatttt agtaacgtgg aaaataacgt      4440
     gttaatctat agaaattatt tttaaaaatt aatttcatta caattttaag ttaactatca      4500
     cattaaaatg tttatatacc tgtttaacca gaaccgtaca tgcatgaatt attattaata      4560
     tttaattaaa atattaaaat atacaggcca ctattattgg atacaaaact aaaaaagtgc      4620
     tatttgttgg gatcagaaac cgcttttgta ttatctgtag tcgagctgaa acaaaaaatg      4680
     aaactccagg cattcataca tgttttttaa actggaaaaa agcagccacc ggtatagaat      4740
     cagatggaat agctgagggc tttttaaaaa gtgtagagct acacaaattg aagttcaata      4800
     agcttattgg tacgttattc aattttaaaa actattatgc accaatatta atttactttt      4860
     gatttcatag gtgatggtga cagtagtgtc actaaaagac ttaaagaaat tctaccctat      4920
     ggacctgatt atattgtgca gaagatcgag tgccgtaatc acatgttacg gaattatatc      4980
     caaaaattaa cttttattgc aaaaaaaact aattatccta tcaacttaag gcaatttatt      5040
     ttgaaaaata tattaagatt ccggactgct attgtgacag caataagaca cagaaaaaat      5100
     gaaaatgtac caacagcaca gaaaattaaa agtttgtaaa acattttaat tataaataca      5160
     cagtattact gtattatgat ttattgtcga cagataaatt attcaaacac cccaaaatgt      5220
     tagttatagt gacacaatat aatatataca tatattgtaa ttatatatat atatatatat      5280
     attttttttt taaggttcga ggttatatta ttttagtctg ttgctcgccg ctcggccaaa      5340
     agctttaaaa tttagtaaaa ggattcttat aaatcgttta ttatatttta attataaata      5400
     ataaataaat atgtacaaac ctatatatgt tataaattta atatttgtat aaaatttgtg      5460
     tattgtacta aatgaatata tttttttaga tttatcagcc gacttattta atagtccgta      5520
     tcacattttt ggtgaacatt caaagtgtga cgattatttt tgtaaaaaaa gacttctaga      5580
     agaagaaaat tgggtacagc gtgcagaaat ctgtggaatg atggtcgaaa taaaaaatat      5640
     tgttaatcgc ttagtgataa attcggaaag tttgatttta gacgtagata acaacatatg      5700
     cgagcaattt aacagcgtta taaataaata catcggcgga aaaagaataa atttatcgca      5760
     acgaaattca tacaacaccc gggttgaagc tgcagtagtg tccttcaatt ctaaagaata      5820
     cctgcgagca ataaataaaa acgtgatgaa aaaaagtcca ggtacctatt tataatacct      5880
     aactagtttg gacaattaat acaattatat cttataaaat atcataaaaa taacaaataa      5940
     ataagtataa tgagttgtca ttttatatat tataggtaaa atgttaatat atataaattt      6000
     ataataattc attataaata ttttagggaa atttagtaaa ttattcttaa aagatgttgc      6060
     gagaaagaga cgtaataatg cacgaagccg agagttattt ccttctaaaa ataaaaaaat      6120
     taataaaaaa tgtggtcctg atgaaaacta tggattagca gatgagttgg ttgacgattt      6180
     aactcctgca gaattcaaaa taagaaaaga taattttctt aacgaattaa agaccactaa      6240
     tcgaggtaaa aaattttaat taggtataga atacaattga tgctatatga atcttttgta      6300
     ttcatttttc agaaaaattg gaaaacgaaa ccaaagatca atcgaaatcc caactttggt      6360
     attcggagag aaaaaaaaga attactgcct cgaatatagg gaaaatatgc aaaatgcgac      6420
     aatatacatc ttgtaaaaag attgtatacg acttgctcta tagttgcata aacataaaaa      6480
     taaaggctat tgaatatgga cgtgtaatgg agatcgaagc aaaaaacaaa tttgaaagtt      6540
     tatataattt gataattgca cctgtgggtt tgtgtgtaga tgagaacatt ctatatttag      6600
     ccgcaagtcc aggtagttaa aagcaaaaac tattaaataa caatacctaa ttagttataa      6660
     ttaatttaaa ataattaaaa ccaaattaat aaccaataaa ttatattatt tagatggcct      6720
     cattggcgaa gattcgatca tcgaaattaa atgtccgttt tcggctagga atttttctga      6780
     tatattcgat gctattgacg caggaaaagt aatacattta gttttttaat acctacctta      6840
     cctaatattt ttaaacaatt ttaaatttct gcagattcct ttttgtttta aagacaaaca      6900
     aaacaatgtt agcttaaaaa ctaaccataa ttattattac caagttcaga ctcaattgca      6960
     cgtaaccaaa agaaaaaaat gtaatttttt tatttatacg gaaaattggt attataatgt      7020
     atgtattact atcgatgata acttttggta tcaaaaaata cagtctcaaa tacatttgta      7080
     agtataatat taattagtat aaagtataaa ccatttttaa tttaattaat ttttaaatat      7140
     atgttcacaa atttaaccat atattattgt atatctcgta tttagattct ataatgaatg      7200
     tttattgccg gaattaatta atcctcagtt tggtaagagg caactagtta ccgacattat      7260
     cgatccaccg agaattttaa aagaacaagc agccaaaaaa aagtattttt ctacttttct      7320
     tattacctac ataggtttat taaataccca taatacttat atatatacaa taatacaata      7380
     tcattttttt tttctagatg atttatttcc aatatcagca tctcacctac ctatctatta      7440
     catgatgtac atataaatat aatgtcttcc tatatttttt ttagttttag atcgttttaa      7500
     ctgtgtactc attaaaaata tcagattctt ataataatta ttgattatgc tttattactc      7560
     ttatgtttaa taatatatag aacaaacatt agatggataa acctctttac aacggaaata      7620
     tcagtttgta ccgagcgatc ccgttataag gaggttttac tgtattatat gttgtattac      7680
     tctttatgta aattttgtta aaaaaaatta acctcatcgg gggaagacgt tggtctcttt      7740
     aaaatccaaa tggttacatg gactgccttg tttacgcttg ggaagacgat ttttttttta      7800
     ttgaaaaaca taaaataaaa tatttagata ggtatctagg taatattcgt ttaggttaca      7860
     gttataaatt agattttatt tactgtattg tatatatttt ttaatgagta agtacctatc      7920
     taaaaatgca atatatacag gccgcgtaag tacgcgcgaa tattaaaaat actacggcgg      7980
     caatgcggca taatatacgt gtaacgtgta tgcattttat atttacgcga tccgccacag      8040
     acgaaggttg agaaaataat aaacatcgct cccgaatgag caaaatcgtc ggccagccgc      8100
     cgactgtgag tagtgggcgt ggcttaaacg tcgcgtgctt gcggatcgcg aaaacaccta      8160
     acagcgcgtt ctctcggtcg ttgtatacgt ttcactttta ctgtgactgc ctc             8213
//
ID   KolobokE-2_TC repbase;    DNA;    INV; 4697 BP.
XX
AC   .
XX
DT   06-MAR-2008 (Rel. 13.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Kolobok-type family.
XX
KW   Kolobok; DNA transposon; Transposable Element; Kolobok1-1_TCa;
KW   KolobokE-2_TC.
XX
NM   Kolobok1-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1..973 2016..4697
RA   Jurka J. and Bao W.;
RT   "A distinct subgroup of Kolobok-type DNA transposons.";
RL   Repbase Reports 8(3), 171-171 (2008).
XX
RN   [2]
RP   1-4697
RA   Kapitonov V.V.;
RT   "Kolobok transposons from the KolobokE clade.";
RL   Direct Submission to Repbase Update (27-FEB-2014).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
CC   This transposon belongs to the KolobokE clade; it codes for the
CC   TPase fused with the alkaline lambda-like exonuclease [2]. It was
CC   renamed from Kolobok1-1_TCa [1] to KolobokE-2_TC [2].
XX
FH   Key           Location/Qualifiers
FT   CDS           1263..3746
FT                 /product="KolobokE-2_TC_1p"
FT                 /note="TPase and alkaline lamda-like exonuclease."
FT                 /translation="MGNNSKLSFSKKRKSRKQIMRNFWKKQRKGSKTEFPS
FT                 KSSLAECSFQSIESSSDDDEVFVIEKDTSQEQIYIPSGRRIVDIGHLFSEL
FT                 KNIKHDIYSCSFFNVDIVHEAHFGFKSVFKYKCSMCGVTGTFSTEKADNNI
FT                 NEAAVCGTVAIGAGYSQITEFCAALNIPQLNKKTYIKTEGKILHIAENVAL
FT                 DEMLAAGQKERALAIEAGEIDKDGVPYITVVVDGAWSKRSYKSNYNASSGV
FT                 ATIVGARTKKILYVGVKNKNCKKCMYYKKKNQTTPPHKCFKNWKNTSTSME
FT                 AAIILDGFKKSVDMHNVRFKNLIGDGDSSVYKKIRNARPYGPNYFIKKIEC
FT                 RNHILRNFCTKIREIAKTPRSDINIKTFLRNNYLKFRTAIVSAIKYRKNEN
FT                 CTFDQKAENLKNDILNGPAHIFGNHSKCATYFCKTVGQITNAVAYSDFKNS
FT                 SLFELFMQALKRVANLSSSLLYDVDNNSVESFNSVVNKLVGGKRINFSERG
FT                 SYHGRCFAAVVNVNNKNKFVFKIMEKISGNSGIYTTKFSNRLLKTKELQAT
FT                 KLNKRKIRIQSADSDYGATNDIMDMPTETYDKIKNEFLNDLAACDILKIPL
FT                 LTIGQRNNEQWDKERNNKLTASNFGRIINMKCTTNTANAVKDILYRVGLSK
FT                 FKKLPEPLQWGIDNEEKAKEKFEQITGIKVDSCGFFVDKEKKFLGATPDGL
FT                 VGSNAIVEIKCPFSARNTNIKTAIEQKLIKYLEIDSQDDSKIVLKEKDNYM
FT                 HQVQGQLHITNRQTCYFIVYTSTDLKYCIIEKDDSKYWNGGMIDCLENFYM
FT                 NAMLPEIIDSRHSRNLPLRSIIKKDL"
XX
SQ   Sequence 4697 BP; 1737 A; 658 C; 766 G; 1535 T; 1 other;
     ggcttcaggg taccgaagcg attgttgaga attggtgtac tacaagttgc atactttttt        60
     tagacctgtt ttcagtgaca gctgtcaatc atcggatagg catccgacct tcgcctcggg       120
     gtgtcttgtc ccttctcata aaatgcaaat aatgtaaaca aactgaattc cactatcgcc       180
     cacgatagtt tctcttattt cagagattca agcaacatac agtgaaaaat acgtttttta       240
     ttttgttaaa aaaatttgat actaaagaat aataaaatac tagcatagtt ttgtaaaaaa       300
     taatacacca ttacaccatt tatttattgg gttttatgtt ttaattaacc gaattctgtt       360
     cgctatatta tgtgtcatgt gcatttctaa ttggatcact tgcattgaaa aaatataaaa       420
     taaaaaaatt aattggtgaa acattattgt tctttcagaa aacagtttaa ctttaaaaaa       480
     gttactagga atatctcatt aaaatgatga aaacttcttt aaacccgctt tttcgtctga       540
     taattttatc caggtaataa attctgaaaa atacattgtt gtaaaaattt attgtaacta       600
     tacccagtaa taattatagt acaaataacg tatcgagaga ttgtaagatc cagtcttagg       660
     gatataattt gtttacgtta cgcctagtaa aataaatgat acttttataa ttatgtatta       720
     ttttagaatt taggaattat ttctcgtttt tttattaaat ttatacaatt tttctataac       780
     tagcttgcga agatatagct gcgttactct tacattatwt aaattttgtg tatttcttta       840
     aaatataagt aaacattgct aaagatcggg tacctgaaac tgaaatcaca tgtaaacaaa       900
     aatgtttatt agaaagttta gaaagttttt cataagctca tgagtcataa gacttgtatt       960
     tagtggaggg tttagggtgg tggttggtac ttatatataa tcaaaacata tagttctaca      1020
     acttctttac tctttgagtc tttgcagagt gctggtcact ttcttgcccc acagtgtttt      1080
     gtaataagtg gtaattttta aacagtggta tttgtagttt ttaatttgtt actttgcaga      1140
     atatcaattt tatctatttc tttttattta attatttgtt gcgactgctg gttggtaagt      1200
     gtatttccta atttcttatt atatcacttg taaatagttg aaatctttgt atatttaaaa      1260
     ttatgggtaa taatagtaaa ctaagttttt caaaaaaaag aaaaagtcga aaacaaataa      1320
     tgcgtaattt ttggaaaaaa caacgaaagg gttctaaaac ggaatttcca agtaaatcaa      1380
     gtctcgcgga gtgtagcttt cagtcaattg aatcaagttc cgatgatgat gaagtatttg      1440
     ttattgagaa agatactagt caagaacaaa tttatattcc aagcggtaga aggattgttg      1500
     acataggtca tttattttcg gagttaaaaa acataaaaca tgacatttat tcttgcagtt      1560
     ttttcaacgt tgacatagta catgaagcgc attttggttt taaaagtgtt tttaaatata      1620
     aatgtagtat gtgtggagta acagggactt ttagtacgga aaaagcagat aataacataa      1680
     atgaagcagc tgtctgtggc acagtagcaa taggtgctgg ttattctcaa ataacagaat      1740
     tttgcgcagc tttgaacatt ccacaactta ataaaaaaac atatattaaa accgaaggaa      1800
     aaattttaca tatcgcggaa aacgttgctc tagacgaaat gttagcagcc ggtcaaaaag      1860
     agcgtgcgtt ggcaatcgaa gccggtgaga ttgataaaga tggagtacct tacattacag      1920
     ttgtagtaga tggtgcgtgg tctaaacgtt cctacaaatc aaattacaac gcatcttctg      1980
     gtgttgcaac aatagtcggt gcaaggacta aaaaaatttt atacgtggga gttaaaaata      2040
     aaaattgtaa aaaatgtatg tattataaga aaaaaaacca aacgacgccc cctcataaat      2100
     gttttaaaaa ttggaaaaac acttcaactt caatggaagc agcaattatt ttggatggat      2160
     ttaaaaaatc agtagacatg cataacgtaa gatttaaaaa cctcatagga gatggtgata      2220
     gtagcgtcta caaaaaaatt cgtaatgcaa gaccatacgg gcctaattat tttattaaaa      2280
     aaattgaatg ccgaaatcat atactacgaa atttttgtac taaaattaga gaaatcgcta      2340
     aaactcctcg ttctgacata aatataaaaa catttttgcg caacaattat ttgaaattta      2400
     gaaccgcaat tgtttcagcg ataaaataca gaaaaaacga aaactgtact ttcgatcaaa      2460
     aagcagaaaa cctgaaaaat gatattttaa atggacctgc acatattttt ggtaatcatt      2520
     caaagtgcgc tacgtatttt tgtaaaacag ttggtcaaat aacaaatgca gttgcatatt      2580
     ctgactttaa aaatagttcc ttgtttgagt tgttcatgca ggcattaaaa cgagttgcaa      2640
     atttatcttc aagtctattg tatgatgtcg ataataattc tgttgagtca tttaattcag      2700
     tagttaacaa acttgttggg ggtaaaagaa taaatttttc agaacgcggt tcttatcatg      2760
     gaagatgctt tgcggcagtc gtaaatgtaa ataacaaaaa caaatttgta tttaaaatta      2820
     tggagaaaat atcagggaat agtggcattt acaccacaaa attttcaaat cgcttattaa      2880
     aaaccaaaga acttcaagct acaaaattaa ataaaagaaa aattcgtatt caaagtgcag      2940
     attcggatta tggtgcgact aatgacataa tggacatgcc aacagaaaca tatgacaaaa      3000
     taaaaaatga gttcttgaat gatttggctg cttgcgatat tttaaaaatt cctttgttaa      3060
     caattggtca acgtaataat gagcagtggg ataaagaaag aaataataaa ttaacggcta      3120
     gtaatttcgg aagaattatt aatatgaaat gtacgaccaa tacagcgaat gctgtaaaag      3180
     atatcttgta tcgtgtggga ttatctaaat ttaaaaaatt acccgaacca ctacagtggg      3240
     gaattgataa tgaagagaaa gcaaaggaga agtttgaaca gatcacaggt ataaaggtag      3300
     attcatgcgg cttttttgtt gataaagaaa aaaaattttt aggtgcaaca ccagatgggt      3360
     tagtgggttc aaatgctatt gttgaaatta aatgtccatt tagcgcaaga aacacaaata      3420
     ttaaaactgc catagaacaa aaattgatta aatacttaga aatagattct caagatgata      3480
     gtaaaatagt tttaaaagaa aaagataatt acatgcatca agtacaaggt cagctccaca      3540
     ttactaatcg ccaaacttgt tattttatag tgtacacctc tacagattta aaatattgta      3600
     ttattgagaa agacgatagt aaatattgga acggaggaat gatagattgt cttgaaaatt      3660
     tttatatgaa tgccatgtta ccagaaataa ttgattcaag acatagtcgc aatttaccat      3720
     tacgcagcat aataaaaaag gatttgtaaa taatatttca agtttagttt tagagatttt      3780
     tacataaata cataatatga tgataagcat tttaataata attataattt ttaatttgaa      3840
     caataaaagt aaaaaaaaac ttcctcagtg ggttgacacc ttgtcgtggt gagggagctc      3900
     agtagttcta tcacaaaacc tgtgcagaac gaagctaagt acaaccaaag ttttaatcat      3960
     ctttttttat atttttttta aaacaggaat aattttattg ttaaaagtat tcaaaaaaat      4020
     agcgagcgtg attactcgta tttcaaaatc tcataagata cgttgatagc agtgtctaca      4080
     aaaaaaacgt aatgcaaatc tataggtacc taattatttt gttaaaaaaa ttaattccga      4140
     aatcatgtgc tttaatttta taccactatt agagaaatcg ctaaaattcc tatttgtgcc      4200
     gatacatttc tctgtcttga acaaatgcaa taaaattatt atcttgtggg tcaccccaat      4260
     ggtggttacc tccagcggtg cgtcctaaac ccgtcataaa tcttcttcca gctagctacg      4320
     cattcgaaga aggatgcatt aaaagttgcc tacttacaat ttaatttttg ctttatatct      4380
     aacaattaag aacagttaac aaaaatctaa aatatctcag gtctgtattt ttaaatttcc      4440
     tataaaatgg tttttttaaa ttctcaatac aatgcaccgt tatcaaaaat tcgtatcaac      4500
     ttcattaaca gacattttat ttaataaaaa aatatctagg catttatttc aatcaaaaat      4560
     gactcttcga cctacattta cttataaaga aacactgcaa atgtcaagaa actcttcaag      4620
     tctaaatttg cggctaaaaa cagtgaaaac agtttacacg taaaacgtat gcgccagctc      4680
     ccagagggtc tagagcc                                                     4697
//
ID   KolobokE-3_AP repbase;    DNA;    INV; 8982 BP.
XX
AC   .
XX
DT   15-FEB-2014 (Rel. 19.08, Created)
DT   15-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Kolobok DNA transposon from Pea Aphid.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-8982
RA   Kapitonov V. and Jurka J.;
RT   "KolobokE DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 14(8), 2269-2269 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 8982 BP; 3426 A; 1202 C; 1266 G; 3086 T; 2 other;
     gaggacgcta cactggtcat tttcagagct aaaaacacgt ctacgaaaaa caaacaaaat        60
     ggcatcaaaa aatggtttta gagtaaaaat acttataatg aaatttaaag agaacaatat       120
     ttaggaggga acctcatcag tatttttcaa aatatcaagt agtaaagaag ttacaattgt       180
     ttaaaaaatg tagaaaaaaa ggtttttgtg cctttaatat cgagctgtgt atttaagcta       240
     attaaaaacc ccaatgaggt tccctccgaa atattgttct ctataaaatg tattataggt       300
     atatttactc taaaccattt ttaatggctt ttcgtttgtt tttcgacatc atgtttacgt       360
     cgctagattt gatttttcat tgccatcatg tgatgccacc tactttccgt tgtgacggcg       420
     gtcgcgaatt cccccactac gccaaaaaat taatgactgt ctcgtgcggt cggtcggtta       480
     tcggcgacga cagatgcttc tgagaaatga gaatagacta tgcgccgatt atgaaccaaa       540
     caaaaattgt tcctaatatg gattactgac attatagaaa tgacaataat gaataaataa       600
     aattattata attatgcaat cggcaatcat agacggcatt ccgtcactga ccgactggaa       660
     aactctttga tttgtgttca tttttccata atttttgtca gtggcgccaa acttatatta       720
     tagcatgtga agcgatcgct tcacttctta aatttagatg acttgtaagt tgtagtgggt       780
     gggatgatta atttagattt tgcttcacaa aaaaatgtat agatcgacgc cactgatttt       840
     tataacataa ttactacaga tattttgata ttttcagata gtaggtacat caaacttcaa       900
     agtatgcatc attcagcaaa aataaattca agtacctaat cataattatg aaactaatta       960
     taaacatttg cctattatta tttattataa tataacttat aagtatgata agtatgacta      1020
     tcccccacaa aaagaaatac ataaatatac cgtatttatt aataagtgat tacgaattcc      1080
     ggacagcgaa agtaacaata tgagactacc tactaatagc tgtatttcca gaaatgtgta      1140
     taaaaattaa aaataaatat tcaagtataa ttattattat aactacctat tgtaatactc      1200
     aaatattatc ataaaataag ctctgaaaaa taaccaatcc ttcaggatga ttcaacgtga      1260
     tcacatcagt tgtaaacatt tttgtgactt ttttacaatc atacggttgt tatacattgt      1320
     tcattatggc aacaaaaaaa atgtgctaaa gcgtaagcga tctactaaaa atatggttac      1380
     caagacgctt tcacaaaggc gataaaaaaa accgaggtta gtgccctaaa ttacatatta      1440
     tttattttaa aaattaaaac catatctcga ttgtacctcg tcatagagaa ggtcactgat      1500
     tttttctgaa atgtcgataa ataaagttat gtcgcccaaa aaatttagaa aatgtaatac      1560
     aaagaactta ttccagttga aaaatgcgtt tgaagttcat atccgtcaaa gtaacctatg      1620
     tctcaataac agcagttgaa aaatattaat taaaaggctc aatttttttt tataagtatt      1680
     caaagtttga attttgacaa attttatcac ttttaaaatt taaaaattat tttgtagtta      1740
     aaaattgata aaattttcaa attgtatagc taaggattga aaattaagaa taaggtacca      1800
     cataagtaag tcattctgta accaaaaaat ttcaaaaata taaacacaca gttttttttt      1860
     atagttattt tatgttcaaa tttggatgaa ttacatatta aataaacaag aaaaacgatt      1920
     ttagttaatt tgttgtaatt ttataatatt ataatttata attaaactta ccggctacta      1980
     tattaataat aattagataa taacaatata tatataatat aaaatatcca catgacaaac      2040
     catctcagct cagaatcatt tttcgtataa aatgatatta tatcattgaa ttcaaattta      2100
     ataccatcca ttaagcagtg acccacttgt aacctactgt acagcagagc gacatcaatt      2160
     tacccacctt ttttttttaa aaattaatga aactttagag tcgattttgt ggacagagat      2220
     cttgaagaat cttcactgca agttcgattc aacaatgttg atcaaaattc aaagtaataa      2280
     cattattttt aaaacagcag ctatgtccta tatatacgcc ggtgtgtttg ttaatataac      2340
     attatagaca cagtatatat tttttttttt atatttgttt ttttggaaaa aatcctaaaa      2400
     atacctatta aattatgtag gtataggtat attacgatat ttagatatat tattatttta      2460
     attaaaaaac tgttaatcga agggacttta aactttttac cattttgttt ttcaataacg      2520
     tcaataacgt aactcttcca ttatattact ctatccttta tatagtagac tattaattta      2580
     actttctact aatagttgaa atacaaacgc ttcaaacgta ataaaaacct ttaacatttt      2640
     aaaataaata taatatacct atactcctaa aatttcaatt tgttagtttt tgatagcttt      2700
     gacttgagct attcaaaatc gtatttgtag taatcaacca taaataaaat atgatatgtt      2760
     gtatatatac aactatacgt gaatctattt ttattaaatt tatatatgaa tagtaatgtc      2820
     gaagagccaa caggaagtaa tttagttgac acaccattga caccagagca gtcattgtct      2880
     caatttgagt aagtatatct tatttgtaaa ctggactaaa tatatgtata ttgtataggg      2940
     ggcttagaaa tttaaaataa gttttttaat atccaacgat gaaaaaaatc gaaatatcca      3000
     aaattaatcc taattatttg aaattttaac acattatggt ataaagagta tattttaatt      3060
     tgtatatagt atgtacctat aatacattca gaacaatttt gtgcaaatca cataacttta      3120
     aaattttgaa agttattgtt tcatataagt tataaatgga aagcaaaagc accctaattc      3180
     taattaatat tattgaagca tagtacacat aagtatagta taggaattta aaggaattga      3240
     attccaaagt acaaaattcc aagtaacatt ttttggaaat aatcaggaaa aaagtaaaat      3300
     acaattttac taatttgaaa tttttaggag tacaccttgc ctagatgaaa tgttctggcc      3360
     tttatcagag taagtttata atattttaat caaataatta tatgtataaa actataggta      3420
     acttacatat ttacctaatt aattttagtg acacccacac tccatcacat acacatacgt      3480
     tatgtacaga aaccaatgat aatgattcca atcttgattt gaaagggtaa taactaatat      3540
     tttaataata atataatatt aaaattataa tattatgtag gtataataag ttagttttta      3600
     ctgtggtgtt tgaattttaa ttgtagtcct ctagttggtc ggcgtattgt agatatttct      3660
     catcaaacaa atacaaataa ggcataaagg accatttgga tgctcattta ctgacatgga      3720
     atttcaatca gaagtgatac atggctttta ttcgatattt gtttttaaat gtaaagtatg      3780
     ttgtattgaa tctaaattat actcggaaaa tattcaacaa aatcagtaca tgttagttaa      3840
     taaagctgta gtaaatgctt gtcagtccat aggtaaatat gtgtagtaaa gtttaataaa      3900
     gaatacaatt ttattatttc ttgtaattat aatgattata tgtacctaaa atatgaaact      3960
     agggattggg cacactcaac tcacggagtt tgccgcattt attgatgtac cgtcattatc      4020
     gtgtagtggg tatgtacaac tacaatcaaa cgcagccaaa gctgtgagcg aagtagcatg      4080
     ggatgaaatt aaaaaggctg gagaagaaga acgcaaactt gctatacaac atggagatat      4140
     tgatattgac ggtgtaccga tgattacagt ggtagctgat ggacaatggt cgaaacgcag      4200
     ctataaaacc aaatatgacg cgttatctgg agtagtaaat attattatta gtatttaata      4260
     attattatac aattaatgat attttattat ttttattaaa attgttacct ataagtgcta      4320
     ttataacctc tttatgtttg aaattatgtt atctgtaatc tgtactctcg cccttcgagg      4380
     gtgtaaacta tttacacata aacaggtaca ttacaaacac caactatatt catttttaaa      4440
     ttttaataat aacaattcac aggctacaat aattggatat aggacgaaaa aagtactgtt      4500
     cattgggatt cgcaataagt attgtgtaat atgtcagaga tctgagtcaa aaaacgaaaa      4560
     cagtataaat caacatgaat gttttttaaa ctggaccaaa gcatctacta gtatggaggc      4620
     cgatggtata gtagaaggct ttttgaaaag tgtggaaatg catggactaa aatataatcg      4680
     gcttattggt aaatgtattt tctaagagaa ataattaata tattatattg taaaaactac      4740
     ataggtaggt actaatttat ttaactgtat aaatctacta tttattggtt ttaatatgta      4800
     atttcgtcca aatttgattt taaaatgtct gtgaaaatta atcgtgctta tgtattttaa      4860
     atatttttca acttctattg taacaatata ttaggagcct cgtattaaat tttcacacat      4920
     tttggactaa aaacatccgt aaatagctca aaataagtca aaatattttg aaaatgttac      4980
     ggtgtgtaga aaatggtaat attataaaca ttcagtcaaa atatcttgac gtatctacag      5040
     tcttttcttt tagagttatg ccaaaaacca aaatagattt taaaaaataa aaccccctca      5100
     aagtaccaac tagattcact ttcctctctg aaaagatact gttgaagaaa atttaaacat      5160
     ttttactaac ctaaaaggtg gtgacagaca caaaaaaaaa ttaaaaatta aaatgaaaaa      5220
     aaaccacaca tatcattgta aaatcagtac attaatcgct ccgctccgat tataaaatac      5280
     atagtttgat ttttactttg cgtttaggtg acggagatag tagtgtgacg aaaagacttc      5340
     acgaaatttc accatacggc cgccattttc acattaaaaa aattgaatgt cggaatcacc      5400
     tgatgcgaaa ttattgttca aaaataaccg cgttatctaa aataacaaaa tattcattgc      5460
     gagttcgtaa atatttattg accaatatac tacgatttag gagtgatgtc acaaaagctg      5520
     ttaaatattg gagaaatact aatgatacaa acaaagctca aaaaataaaa ggtaccataa      5580
     ctctttttat tatgtgaatt aattacattc aatatgatta tcgttttata tatataatcg      5640
     cataatattc ataatttata ttatattata ctaatattaa tttttaggaa ttcaaaaaga      5700
     tttggctaat gctccattcc atcgattagg acaacataca aattgcgatt cctatttttg      5760
     taatggttct aatctacaga atacattaaa cttagttccc gaagcagaaa ataatggaat      5820
     catgagtgaa atccaaaata taatgtccag attaattaca aacgccgaaa gtttactcga      5880
     aaataaaaac aataatattt gcgaacaatt taattctatt ataaacaaac atactggtgg      5940
     caagaggatt aacttttctg gaagaagaaa ctacaataca cgggttgaag ccgctgtgat      6000
     agatttcaac tcaaaaaact ttttacgact tatacataaa aaacattcta atggctttag      6060
     tcctggtata caatcaataa atattcaatt tttagtttaa tttattttcc tgcacacatt      6120
     atgtttaatt tcaggaaaat ttgggaaaaa gtttatcaat aactgtcata ggataagatc      6180
     aaacacaata aaaagacggc agttatttcc agaaacacga aaagtaccaa aaatgaagac      6240
     aagtggaccg gatgctgatt atggtatggc tgaaccatta ttagaaacac tatcaccaga      6300
     acaaatggaa attaaaaaaa cagactttct tgcttcgtta caaagagcta atgttgaaca      6360
     aatagaaata gataccagag aacaaagtga gtgtgataaa tggtttcaag agcgaagaat      6420
     tcgtcttact gcatctcggt ttggccatat ctgcaaaatg cgaaagacca ctagttgtaa      6480
     aaattctgtg tatgatgtac tttatgggtc tgatattcac tccaaagcta tccagtatgg      6540
     aaaggacatg gaagttgtgg caagaagaaa agctgaacgt tttttatcta aaaaaatata      6600
     tgcatgcggt ttatttgtgg ataaagaaat aggatattta gcagctagcc caggtgattt      6660
     tgtatataat atctataatc tattaaaact attaaaaaaa aaaacttggg tatttaggta      6720
     tttaaaaaaa aaattatttt aataaattga tgtaatagct atattgtatt tataacaaac      6780
     caaataaaga ataacaagat tctgttataa gtaaaatgga gaaaatacta caacattatt      6840
     tttaatacgt ttattattat aatatgagta ctgaacttta aattatattt ttatgctaat      6900
     aattaatcat ataatatttt tcttttgtta agatggattg atagaaggta ccgcaatagt      6960
     agaaattaaa tgtccatttg tggctagaga tactattagc gcagttgaag ctgtacacaa      7020
     aaaactggta agaatataat attgttttat aaacgagtca tcatatatta taaaataaca      7080
     ttacaactta ctaacgtata tctattttta gcttaaacat tgttttattg atcagtctac      7140
     tcaagcagta caactaaaaa aagaaagtgt atactactat caaataatgg gacagcttta      7200
     tataactaaa agaacaaagt gttattttgt tgtatacgct gaaaaatggc tgcatgtaga      7260
     agaaatatat tatgatcatt ctttttggaa atcaaaaatg gaagaaaagt taaaaacgta      7320
     cctattatta attaatattt taagtaattt ataacatatt ataggcatat acctagtata      7380
     tgtttattgt ttatactata tagggtgatt cttttatcat ataaaacact cattatttca      7440
     aaaagtttaa atgtttttga aaatatattt ttacatagct ttaagtcgtg tacaaaacaa      7500
     ggttttaatt aaaaaattat atttttaaat atttgttatc catataattt ttaatttttt      7560
     tgaataacaa cgtgtagttc taatttgata ttccaaaaca caatatttta aaacattatg      7620
     ttttggaata taaaattaaa agtacatgtt gtcattcaaa aaagtaaaaa acttaaaaaa      7680
     atataaggat aataatattt taaaatataa tattttagta aaatcgttgt tttgtaaacg      7740
     acttgaagct atataaaaat atattttgaa aaatatttac actttttgac ataattagtg      7800
     ttttatgata aaagaatcac ccagtataaa gaaatttaga aattacaaat agtatgggta      7860
     ggtactaaat aagtgttatg acatttttta cagatattat atgaaatgtc ttttaccaga      7920
     aataattgac ccgttatatc caaaacggtt gcttaaatcc gatatcgggg aaccagatta      7980
     tatatgtaaa aacattaacc taaatgaaaa ataaaattgt ttttattttg tacgacacta      8040
     cctataaaat tttttttata aataacaaat catttaaata ttttgttttc aaacgctcat      8100
     agtcataaca ttttgatatg ggtttatgca aaactttttt tttaaactct gttaacaaaa      8160
     tagtagtatg aaaatcataa aataccttta catcattata ggtaccttag tacctacgtc      8220
     aaattaggcg ttgttcaatt tgttatatcc tktttttgtt atttttctaa tagattgttt      8280
     aaatctaaaa atgattcgta ctattaatta ctacmgtcta caacataatt ttacttcaac      8340
     acatttttaa caacaaccta ctatgtaggt actattgtac tacatattat attttttata      8400
     attacaaata tgttaatgga tgcgcgcgtg aatcgtatct ttgtaattcg taaatcgtag      8460
     gtaagtagta agataaatac tagtagaaag atagaacttt acaaataatt ctaaaaacta      8520
     aaaagtatat gtggtagtag ccactaggag gtacatcata cacataaaaa attataatct      8580
     aaattatacc tacgcaaaac atttacctac tggaaaacta atatttagat gtttacctaa      8640
     gtaaaattaa tttgggctat tgttataaat taggtattat ttactgtacc tactttatat      8700
     acctacctat gtttaatgta taatttaata aatataaatc gcgtaggtac acgcggatat      8760
     tgaaaatatt agtggcataa aggcatttac gtgtatgaaa tttatatgca cgcgaaccac      8820
     caccgacgga gagaggttga gggaataata aacatcgctc ccgaatgagc accagtagat      8880
     agtgggcgcg gcttaaacgt cgcgtgcttg cgcatcgtga aaacacttaa cagcgcgttc      8940
     tctcggccgt tgtatacatt tcgctttatg tgtagcgtcc tc                         8982
//
ID   KolobokE-4_AP repbase;    DNA;    INV; 8434 BP.
XX
AC   .
XX
DT   14-FEB-2014 (Rel. 19.08, Created)
DT   15-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Kolobok DNA transposon from Pea Aphid.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-8434
RA   Kapitonov V. and Jurka J.;
RT   "KolobokE DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 14(8), 2270-2270 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 8434 BP; 3131 A; 1082 C; 1222 G; 2999 T; 0 other;
     gaggacgtga taccatcaat tttaaagtgt aaaaacatcc ttacggagaa tagtgattgc        60
     tcgttctata gtggatttag agcaaaatca cctataacca attttaaagt aaacaatatt       120
     ttggagacaa cctcatatca ttttttcaaa atagtggata gtaaaaaact tacagttatt       180
     taaaaaaagt aaaataaatg gagttttata catttaatta atcaagaaat aattgaatta       240
     atcaaaaacg gatatgaggt tatcttccaa attttgttat ctttcttttt ttatataggt       300
     atttttactc taaaaccact ctggacagag tattcgtaat tcttcataac tatgttttac       360
     gactttatac gccgtatgtt ttaatttatc tagccgtcgc gtgctgttcc tagtggaaaa       420
     aaggtcaatt agtgttgcgt gcagtcgtcg gcgacccccc actgacccat tccacatgaa       480
     caccacaata tcgtaatttt ataattacga agaaaataat atttataata tttggaatcc       540
     tgctatatta agccgcgcgc gcgccggcac gtcgtaatag caacgcacgg tcgcccttcc       600
     gccaaattac aaaacaaaaa taaatagttg tttctaataa tgaaccttat cacagcaata       660
     ttgttgtttt cgaaatcgaa agtacctaat attatattgt ttataatgta tacagacata       720
     cagtatactt gtattataat atcatagtgg tatttcttta tattttgttt attgcaagtt       780
     attattttat aacatacaca tattgtcata tttaatattt aaatattttg aatatggcga       840
     acaaaagtaa aaaaactaaa cgttcgcaaa agaaaataat atctcgtaat ctaatactaa       900
     aacggtataa caaaatagag aggtaagttt tgtatattat tatagttata attattattt       960
     ttttaaatat tattttaaat ataatattcc attatcagga ttcaatcagt tacaaataat      1020
     gtcatgatga cagattatac tgagattgat tcttcaacag tagaaaatca tgtggtagaa      1080
     acttcgaatg aaagtataga gtcgtaagtc tgtaaaatat attatatact atgtctatat      1140
     ttgtttatca ttccccacaa aaaaaaagtt tatgaagagg tgctgaaatg tattttagac      1200
     gaaataatca ataatcatag attcaaatat atatctacta ataataatta ttatatatta      1260
     tgatttgtga tgtacttata gtaatgctgt aatattagaa cttgatgtac cctccaattc      1320
     tattgatatt ttagacaaat gtataagccc gtaagttata actatttttt ttttttaata      1380
     ttattttaaa tataatatta cattaaatca caggattcaa tcagttaccg aaaataattt      1440
     catgatgaca gatctcacta atattgatca ttcaacaata gaaaatcatg agatggaaac      1500
     ttcaaatgat agtatagagt cgtaagtctg taaaatatat tatatacgag tactatgtct      1560
     atatttgttt atcattcccc acaaaaaaaa ttttttgaag aggtgctgaa atgtttttta      1620
     gatgaaataa tcaataatca tagattcaac tatatatcta ctaataataa ttattatata      1680
     ttatgatttg tgatgtactt atagtaatgc tgtaatatta gaacttgatg taccctccaa      1740
     ttctattgat attttagaca aatgtataag cccgtaagtt ataactatta ttttttttaa      1800
     atattatttt aaatataata ttacattaaa tcacaggatt caatcagtta ccgaaaataa      1860
     tttcatgatg acagatctca ctaatattga tcattcaaca atagaaaatc atgtgataga      1920
     aacttcaaat gatagtatag agtcgtaagt ctgtaaaata tattatatac gagtactatg      1980
     tctatatttg tttatcattc cccacaaaaa aaattttttg aagaggtgct gaaatgtttt      2040
     ttagatgaaa taatcaataa tcatagattc aactatatat ctactaataa taattattat      2100
     atattatgat ttgtgatgta cttatagtaa tgctgtaata ttagaacttg atgtaccctc      2160
     caattctatt gatattttag acaaatgtat aagcccgtaa gttataacta ttattttttt      2220
     taaatattat tttaaatata atattacatt aaatcacagg attcaatcag ttaccgaaaa      2280
     taatttcatg atgacagatc tcactaatat tgatcattca acaatagaaa atcatgtgat      2340
     agaaacttca aatgatagta tagagtcgta agtctgtaaa atataatata tactgtgtat      2400
     atttgtgtat attttttata tttgctgtgt atattttgtc cacaaaaata agtttttgac      2460
     aaaattgatt ttagattctg aacggagtga tgaatgtatt gaatttacaa tgatgtgtgt      2520
     tatttttaga ttctgagcgg agcgatttga atgtactgat tttacaatat gtgtgttttt      2580
     tttaattttt tttttttgtg cctgtcatca tcttttagga cagtaaaaat gcttagattt      2640
     tcttcaaaag tatcttttct gataggaaag tgaatctagt ttgtactttg agtcgtcaaa      2700
     agttaaaatt taccagtagt tttcaaaagt gccgtgaaaa acaaaaaaaa tggaaaaaca      2760
     aatgtttacg caaaatctgt tttcgagaaa atcgattttg gtttttgatg caactctaaa      2820
     acaaatgacc gtaggtacat gaaattttga ctgaatgttt ataggtactt tatagtagca      2880
     ttttctatac accataacat tttctaaata ttttgactta ttttgagctg ttcacgggca      2940
     ttgtcagttt tcaatttttt tagttttttt tttctataat ggtcaattaa atgttatttg      3000
     ttgggtaaaa aagcgtgaaa atttaatgca aggctcttga tataacgtta caataacagt      3060
     tgaaaaatat taaaaataca taggcacaat tttttttata agcattgaaa gttcgaattt      3120
     tgacaaaatg tatcacattt aaaatttaat aattattttc tagttaaaaa tttataaaat      3180
     gttcaacttt tatagctaag gattgatatg cctgtatttt atcttatgtt cttcattcct      3240
     cagtaaattc taaatttttc tagtacatga taaaataaaa aaaattacca aataaatagc      3300
     aacggacaaa atcatctccg ttcagaatcg tttttcttcg tattcaatga tttatcctgt      3360
     ttatgtgttt tattcagtga tttgacaatt catttcaaag ggcgccgcat tgtggatatg      3420
     tctcatgtat tttaccaaat tcagaattct aaacagcata cgcctggtct gggttgttca      3480
     tttatggatg tagattttat aagtgagtca accaaaggtt ttgagtgtag ttggaaattt      3540
     caatgtagaa tgtgtaatat gaaaaccgtt attacgtcgg aaaaacgaga tcctgagata      3600
     attcctatca acaaagcggt agtaaatggc actattgcaa ttggcatagg attcacccaa      3660
     ctagccgaac ttacagcttc tatcgacata ccatgtatga ctgctaaaat atatctgaaa      3720
     tataacacta tagtaggcgc agatataaaa agtagtgcat gggatgaaat gagattagcc      3780
     ggtatggaag agaaaagatt ggcattagag ttaggtgata tagatgagga tggcactcca      3840
     atgtgtccag tcatagctga tggacagtgg agtaaaagaa gctacaaaac gaagtacgac      3900
     gcattatcag gagcggtaag aaataaaata aataatgtat tcgtagtatt ttgttgttaa      3960
     aaattcacaa aattttagta tttacacctt aggttagaaa atttaccaca aagttcttaa      4020
     atacgttttt cttcaaataa ctgtaaaaaa acttgcacta aaaccgacat tttttatgag      4080
     cgtttgaaat ttaaattttt acgaaaccac gtaaaataac gatttagcct caaatgattt      4140
     ttgatatttt tttttataca aaaagtataa attgtaaaaa ctcgaaactt ccattagttg      4200
     tttaaagtga cattttcttt acatacattt tatttcaaaa tatttcgttc acttttcagc      4260
     tatgttatgc ttacttttcg tgctaattac tgcaggcatt tgatttattc gatttttttt      4320
     gttttttttt tataaattta atgttaattt attttttttt ttggctgagt caaaatactt      4380
     gaaaatagaa ggttttacat aagttgatct atgagtgatt caaacattat taaaatacat      4440
     aggaaaaaat ttgttttata agcgtttgaa gtataaatat tgacgaaatt cttcaaaatc      4500
     acgaatattt gcaaattatt ttgtaagtag tacaaaattt atattttttt ttgtatttat      4560
     acctaagaac tggaaattta atacaaggtt gtctataagt aagtcaatta tttaaaaaaa      4620
     tttacaagcg tctaaagttg taattaaaaa tcaaaaattc acgcatagaa taacgattta      4680
     cgatcatata ttgttatata taagactacc tagctgcccg accttcctcc ggaagaaatt      4740
     attttatata atttaattaa aaaacatatg actatttttt ggctatacaa ataatataat      4800
     ataattacat attgtagttg ttgttattgc taatttctga aaattatata tcctacattt      4860
     tgaattgaac cactggagtg gtaaatttta ctctttttat tatagaatag agataaggta      4920
     taataattta acaaacaaac cggtttcctt cgtctccgaa atccagttag attcttatat      4980
     atatagatta atattaataa ttgtattggt tgtattttat tattatgtta taatctcata      5040
     ttctcattac ctatacttaa ttatacttaa ttataaagta aattataaaa aataaacaaa      5100
     taaataataa taataataat taatatttta ctaaataaaa aattttaatt ataggctaca      5160
     atcatcggat atcgaaccaa aaaaatattg tttgtgggaa ttcgtaaccg ctactgtgtt      5220
     atatgcgaga gagccaaagt acttgataag tcaccgaaca ctcacgagtg ttttttaaat      5280
     tggtcaaaag gtgctacaag tatcgaggct gatgcaatta tagaaggatt tttgtctagt      5340
     atttcaatcc atggcctaaa gtacaacaaa ttgatcggtt agtacttact acttagtacc      5400
     tactataaat tattatgtat ataaaaaaaa atcagattcc tattatagta attcataatt      5460
     gtatcatact ctatagggga tggcgatagt agtgtaacaa aaaaattaaa cgaagtgatg      5520
     ccatatggtc cgatgttatt agttgaaaaa attgaatgcc gaaaccacat tcttcgaaat      5580
     tatggccaaa agcttatggg tcttaccaaa aaaacggatt atccttgtta tttgagaaaa      5640
     tttataagta gaaatatatt gagatttcga acggctgtaa ccaaagcgat aaatcacaga      5700
     aaaaatttgg atgatactat gcaagaaaaa atcgaaggta aaaaggttta atttttattt      5760
     agattccttc gtataaatgt aggtattcta aaataattgt aaaaaataat tatttttggt      5820
     taggtttacg gaacgatata ttaaatggac cttatcatat tttcggccac catctcaaat      5880
     gcgaaagtta tttttgttca ggaccaaaat taaatgagaa cgacttggta tctgaaatta      5940
     acaaatgtgg cctaatgaac gatgtgaagt ttgttttacg tcgtgtagct gacaattcaa      6000
     aaagtcttat tcttgacgtt gataataact attgcgaaca actaaacagc atcataaata      6060
     aacatatagc aggcaagagg ataaatttta cccaaaagca atcctacaac ataagaattc      6120
     aagcagcaat agtatcattt aattctaaag gaaattttat tcgtacgatg cataaaaaaa      6180
     tcacaaacaa aagtccaggt taaacataca acatttaaca tttctttatt acctacatta      6240
     gtgaataatt tattattata gtataaaata atataggtat ataattgggc gattgttatt      6300
     taaaatgaaa taaattatag aaaaaaaatc gcggctttat ctattaatat aatataattt      6360
     ttttttttag gaagtatagc gaaaaaattt cttaaatata cttctgacaa aagaagaaat      6420
     ttaaaaatgc gaagatcact ttttaaatca tcaggaaaat actttaaaaa aaaaagttct      6480
     cagggacctg acgaatttta tggtttggct gaacccttat tagacatatt gccagatact      6540
     gtaataaaaa aaaagaagga agattttatt ttatcattga ctatgacaga gacagctaga      6600
     catatattgg aacgtgaaac aatgcaacaa gcgaatagtc aaaggtggtt tgttgagagg      6660
     agaaatagat taaccgcatc aaattttggt cgaatttgca aaatgcgtcc tcaaacatca      6720
     tgcaaatcca cggtttatga tattttatac agtagcccta cttcaagttc actaaattat      6780
     ggaaaacaga ctgaagagac tgcactcaaa tgcctagaat ttaaaataag cagtaaagtt      6840
     cagaaatgtg gcctatttat tgataagttc ataccatatt tggcagcaac accaggtata      6900
     taatattcta ccagcgttaa caggctttat ataaatatta ttttattcat acaataaaat      6960
     atgttttttt atgtatcaat atactattat tatagatggt ttaattggga gcaactcaat      7020
     taccgaaata aaatgtcctt attcggtaaa agacagtgac actttggagc aagctttaca      7080
     agaaaaaaag gtaaaagact ttaaaaataa ttgttgttgg tataatatac taattgctaa      7140
     gtacaaaata caaattaaca gtttgtatga atatttgcct tggaaattgt gtgaatatta      7200
     aatatcgaat aataattaaa ctaattactt aatatatttt tgtagctccc atacataagt      7260
     gaaaaaaacg gtgtgtatca attaaggaaa gaccatcact attattttca aatacagggc      7320
     caaatgcaca tcacagaacg tcataaatgt tattttttta tttatacacc ggaatggaca      7380
     catttagaaa ttattcatta tgatgacgtt ttttggagta aaactatgga gaaaaaatta      7440
     aaattgtctg tatttttaaa ttggttttat tattttaggc taactgctaa aatgtttgtt      7500
     ctatagattt tacgaagaat gtttacttcg ggaaattatc gaccctcaat attataaaag      7560
     attgatgaaa agcgacatat atgaacctgc gcacataaaa gaaaatatag acaatcataa      7620
     aaaaatgaaa attaataaat tgggtaacaa atgacccaca ttgtgtacct ataatatatt      7680
     tgtatattac aatattatat tatatttata agtatttatt atttatttat acctacctac      7740
     ttggaatttt gtttaaattt ttagtataca ttgaagtatt attttcatat aaaaaatgta      7800
     atatttataa atttcgttac ataataaatg taaacattat tagacatatt ataggtttag      7860
     gtatttataa ttaaatatta aaaatatatt attttaaatt tacatttgta aggtttaata      7920
     ttataaatat agttttaatt aattatacct accaatatat ttgatttttt taaaataaaa      7980
     agtaatatgt gtctattcaa aaagaattga cataatatat gattaccaac cggcaatagg      8040
     taatattgta gtttttattt aattgtaatt gaataagtaa taattcgata aatacaaatc      8100
     aagctatgtt ataatacagt atctacgatc tatacaatga tacatatatt taggtaagca      8160
     gtgacttaaa ttataatcag tagattatgg gtaggtacgc gcggacattt aaaataatac      8220
     ggcggcattt cttaatgacg cgaaacgtct tagacgaacg ttcatagaat aatgaacgtc      8280
     gctcccgaag ttccgaatga gcacaatcga cagccggccg ccgacggcga gtagtgggcg      8340
     tgacttacac gtcgcgtgca tgcggatcac gaaaacactt aacagcgcgt tctctcggtc      8400
     gttgcacgcg tacacgtttt ggtatcacgt cctc                                  8434
//
ID   KolobokE-5_AP repbase;    DNA;    INV; 4297 BP.
XX
AC   .
XX
DT   15-FEB-2014 (Rel. 19.08, Created)
DT   15-FEB-2014 (Rel. 19.08, Last updated, Version 1)
XX
DE   Kolobok DNA transposon from Pea Aphid.
XX
KW   Kolobok; DNA transposon; Transposable Element; KolobokE-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4297
RA   Kapitonov V. and Jurka J.;
RT   "KolobokE DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 14(8), 2271-2271 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4297 BP; 1571 A; 569 C; 718 G; 1439 T; 0 other;
     atgaatatta ataatgctgc ggtaaatgct tgccaagcta taggtattgg acatacacag        60
     ttagcagaac tttcaggatt tcttgatttg cctgcattgt cgagtagtgg ttttttgcgt       120
     gttcaaactg aggtagctga aatagttcac gctacagctt gggacgaaat gaagaaagcc       180
     ggggaagaag aaaggagatt ggcagtagaa tctggtagct tggatgtgga tggcatacca       240
     attattacag tggtcgcgga cgggcaatgg tccaagcgaa gctataagac caagtatgat       300
     gcactatcag gcgcggtaag tacctatata tgaaaaatat tttaagttca tccaatgtac       360
     ctatttagta cttagtattt atattatagt atatatttat tttattaatt tatttaatca       420
     atttatttat tgtatatgta tttgtttaca ggcatcaata attggttata gaacccaaaa       480
     agttttattt gtcgggattc gaaataaata ttgcataatt tgtcaaaggt cttcaggtat       540
     gaaggataaa gaaaaacctg tacatacatg tttcctcaac tggaaaaagg cttcaacttg       600
     catggaagca gatggtgtgc tacaaggttt ttccaccagc gttgaaatgc atggtcttaa       660
     atacaactgt ttaattggta aattatgagc tacatttgaa ttcaaagata tcattgtata       720
     cgaataatga ttctgagcgg aaacggtccg tccaaatttc atcgaatttg aacaaaatta       780
     ttgtctataa aaaaattgca cgtgtttatt atattaataa taatgataat aattacaata       840
     ataaataatg ttttaatatt aaggtgatgg agatagcagc gtcactaagc ggttagccga       900
     aagtcgacca tatggcttta actttacaat aagaaaaatt gagtgtaaga accatcttat       960
     gagaaattat gcttcgaaac taacaacact agctagaaat tcgagttacc ctcttcgtgt      1020
     tcgcaaattt atattatcaa acattaagag atttagaagt gatgttcaga tggcagcatt      1080
     acattggaga aaagaaatca atactaccaa aacacaaaaa attaaaggta cctatgtcct      1140
     atttataatt ttgaatttgg ttggagtatg ataataattt attttaaaat attatgtatg      1200
     ttgttatatc ataatatagt gtatagtatt ttgtactatt gttgaccaat ttaccgaaat      1260
     ttctttattg cataaaaaga ctaaaacata tataattgta ggtctcagaa gtgatttaat      1320
     caatgcacca taccaccgac ttggtcatca ttcaaattgt aggtcatatt tttgtgatcg      1380
     atcaaaacaa attcaattaa atttagtccc agaagctgaa actagtggaa tgatgaggga      1440
     aatagtgaac attacttcaa ggcttgtaac taatgcggaa agtttattag aaaataagac      1500
     ttctaatatc tgtgaacagt ttaattctgt tattaataaa cacgttgccg gaaaacgatt      1560
     aaattttagt agtagaggta attataatac gagagtagaa gctgccattg tgtcatttaa      1620
     ttccaaacaa tatttaagac aaattcataa aacatttact aaatgtagtc caggtaaaat      1680
     gcatatttac gtttaataaa ataataactt taatataggt tagctacata attattttat      1740
     tacaggaata tttggaaaaa agtttttgaa aaacagtgaa agaataatac ggcttaatac      1800
     cagtaaaaga agacaattat ttccggaaaa aagaaaagca aaaaaatcta aaacggaagg      1860
     agaagacgaa gattatggac tggctgaacc tctgatagaa tttttttcat cagaagaaat      1920
     ggaaaataaa aaaattaaat ttttagaaaa attaggtcga gctgatgtaa aaaaaatcga      1980
     atttgaaact cgagaacaaa gcaacagtga aatgtggtac aacgaacgta aaatacgact      2040
     aacagcttca agatttggtc aaatttgtaa aatgcgacca aacactagct gcaaaaatgt      2100
     agttcataat attttatatg cttctgacag tctacaaaca aaatcggtac agtatggtag      2160
     agaaatggag actttagctc gtaaaaaatt tgaacaattg tcgaaagaaa aagtttatga      2220
     gaatggtttg attatagatc cagaatttcc atttctagct gccagcccag gtaaaagaac      2280
     attattatta ttttactacc aaaatattag ttagacggat tataatttat attttaaaaa      2340
     taataaaaat taaatcacaa gttaaaaatg tacatataaa aattgaaagt ctaaaatata      2400
     ataaatatat aaatctgaac aattaccccc aacataagct aggaggctgc tgatccattt      2460
     ttttgtaata tttaacttat tttatagatg gtcttattgg tgaacattat ttattagaaa      2520
     taaaatgtcc atattctgct cgtgattcaa acgatgccat tgaagcagtg aacagtaaac      2580
     tggtaagtgt taaattatgc ttagttataa ttttaggggt atatgccaac aaaatattgt      2640
     gttaaaatat tatgttataa ttaaattgct gctatatttt ataccgacga tatttttctc      2700
     atgtgacatg caatatattg gtttcccgat tatattttgt cgataattac ttagtacctt      2760
     aaatttgtat ttagttgtat aagctataca gttaaatatc gttagatttg aagagtttta      2820
     accttcgtaa catttatgtt gtgtaaagtg tgaacgtaat tttgattttg attttatttt      2880
     tagctacaat attgcaaagt tgcagggcaa aaaattaaat tgaaaaaaga tcacgtatat      2940
     tactaccaaa taatgggaca attacacgct actaagagaa aaaaatgctt ttttgtgata      3000
     tacactgcca aatggatcag tatagaagaa atatactttg atcaatcatt ttgggattcc      3060
     aaaatgtctg aaccgctaca aacgtgagtt ctttttttta ataatttgta cactctgagt      3120
     aattagataa tctttcacac gaatacacga ttattagtga atcatgattt atctatttta      3180
     cctattttat taacatatta tattttatac tttaaggttt tatatgaagt ctttattacc      3240
     cgaaattatt gatccacaat tccctaaaag aatgctgaaa tcagatattc gagaaccaga      3300
     ccacataaaa aaaaaaaatg attataaaaa aaaattaata aaatatttga atataattta      3360
     gacaagttga atggtttttt attttttact ttcttagatt gcaactcagt aagtgtaaat      3420
     caaattcaag tagtttattt atggctgatt aaaatgtaag aagagttata ccgggtgacg      3480
     tataagactc gattttcaat atttcattct caaaatcgat aaaatcgttt tgcgttttca      3540
     gttattttca cttttttact tatgaataat tggtataaaa aaattaaaat atcaaaaatc      3600
     gagtcttata cgtcacccga tataactcct ctacaacttt taattaaggt attttgctct      3660
     aaaaccattt acttggccgt attattggaa caaaattgga atgtttttgt acggtatttt      3720
     cgctggttta gcgtcctcaa tgttatatta ttgtcattga ataataaaaa taataatatt      3780
     tattataatc aacggtatta tggtaataca ttcgaaaata ttagtaagta taaaaattaa      3840
     atacataatt ggtatgtcta tattgatatt tttacaaact aaatgtaaat cgtaagttat      3900
     tgtacgtaaa atattgttaa ctcgaatact taaaatgttt gtacaacaat ttgtacggta      3960
     aaaactagat tttctagcca acataatatt gttatataca aataggtata caattgggct      4020
     gacagcggct ttaattaaaa gatggttagt gtaggtataa gagcgaatat ggcggcaatg      4080
     catttacgtg tatgaatttt atttcgacgg gatattagtc acggacgaac gttcataaga      4140
     taataaacaa cgctcccgaa ctcgacaact cgtcggtcgg tacgcggctg tgagtagtgg      4200
     gcgcggctta aacgtcgcgt gcttgcggat cacgaaaaca cctaacagcg cattctcttg      4260
     gtcattgcat ggtttcgttt gcccgtgtgg cgtcctc                               4297
//
ID   L1-10_CQ    repbase;    DNA;    INV; 4330 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4330
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 140-140 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..1092
FT                 /product="L1-10_CQ_1p"
FT                 /translation="MARRINTFRIDYSMIPKKPSFEEVHEFIATVIGLKRE
FT                 EVERIQCSRTHGCAFVKTTDLAIAQRVVEENDNKHEIEVEDKIYKLRIVME
FT                 DGAVEVKLHDLPEDIQEQAIVDFLSAYGEVYGLRELMWGEKFAYDGFPSGI
FT                 WVAKMKVKQNIPSYVVIDGELTALSYYGQKQTCKHCQDYAHNGISCVENKK
FT                 LLVQKTYADAAKQVPSAKTSSTRESKQKKTKKPMQKSVFTKLTDSKKTPPG
FT                 SSALALTPAVKPTAQLATTSKTDLTNMLPPKTTLVLAKKTVSEGYDTDTST
FT                 TSTNSKRSLRSGSGAKKVRPNDEDNDMGDDAL"
FT   CDS           1082..3811
FT                 /product="L1-10_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMRCKMAQHSYNIATININTITNTTKINALRSFARTM
FT                 ELDIIFLQEVENEQLVLPGYNLVCNVDHARRGTAIALKDHIVFSHIEKSLD
FT                 GRLITVRVHNTTLCCIYAPSGTALRAERERFFNNTLAYYLRHQTEHVIVSG
FT                 DFNCVVRQCDATGNNYSPSLHTTIQQLHLQDVWVKLHPTSPGPTYITHNSQ
FT                 SRLDRIYVSPGLNEGLRTIAAHACSFTNHKAVTARLCLPILGRAPGRGFWS
FT                 LRPHLLSREHLEELQLSWQFWTRQRRNFPSWMMWWLSFAKPKLKKFFCWKS
FT                 KIIYDDYQRKHQRLYAELRAAYDGYYQNPRMLSRINRIKAQMLTMQREFTH
FT                 MFVHINATHVAGEPLSTFQLGERRRKRTTITRVLNDRGEHIDGSREIEEHM
FT                 VNHFRELYAVAEEAVDAEDRFECNRVIPAGDEASEACMSEITTAEIYSAIK
FT                 ASASKKSPGPDGLPKEFYLRAFDIIHRELNLVLNEALSSNFPPEFVDGIIV
FT                 LVKKKNTDESARSYRPISLLNFDYKTLSRILKGRLENVMRAHNILSDGQKC
FT                 SNSNRNIFQATLSLKDRIVQLKQHKKRAKLISFDLASAFDLVSRSFLFTTM
FT                 RSLGFNTNLVDLLKRIGDLSSSRLLVNGNLSAAFPIQRSVRQGDPLSMHLF
FT                 VLYLHPLLSRLQQVAGDDLVVAYADDVSVIATSTHKIEMMRETFDRFRTVS
FT                 GAILNTRKTISIDVGFINGNPLHVPWLQTVDTVKILGVIFANCVRQMVQIN
FT                 WDTLVTKFGQQVWMHSMRSLTLHQKVTLLNTFITSKIWYLSSTIPPNAAHT
FT                 AKITSTMGSFXWRRLPARIPIQQLARHIXKXGXKLQLPAMKCKALLINRHL
FT                 NEIDCMPFYKSIVFPENPTQPRPAVPDLXRCSRTSHGYLLNFKIVPLLTSS
FT                 TNIIWS"
XX
SQ   Sequence 4330 BP; 1258 A; 1145 C; 958 G; 961 T; 8 other;
     gacagttacc gctcatctgt tgagctgagc agacgtgctt gttgaaaagg gctgatcaag        60
     tatttttcct cagtttgtcc ttcaataagc aaccgctaat cgcggacacg ccggtccggg       120
     atggcccgtc ggattaatac ttttcggatc gactattcga tgataccgaa aaaacctagt       180
     ttcgaagaag tgcacgaatt catcgcgacg gtcatcggtc tgaaacgcga ggaggtagaa       240
     cgcattcagt gcagccgtac acatggttgt gcttttgtga aaactaccga tcttgcgatc       300
     gcacaacgag tagtggaaga aaatgacaac aaacacgaaa tcgaagtgga agacaaaatc       360
     tacaagctac gtatcgtgat ggaagacgga gcagtggaag taaaactcca cgaccttcct       420
     gaagacatcc aggagcaagc gatcgtggat ttcctctcgg catacggtga agtttacgga       480
     cttcgtgagc tgatgtgggg tgaaaaattc gcgtacgatg gttttccatc cggaatctgg       540
     gtggccaaga tgaaggtcaa acagaacatt ccatcgtatg tggtaatcga cggagaactt       600
     actgctttgt catactatgg ccagaagcag acatgtaaac attgccagga ttatgctcac       660
     aatggcataa gctgcgtcga aaacaagaag cttcttgttc aaaaaaccta cgctgacgcg       720
     gcgaaacaag taccttcagc caagacttcc tcaacgcgcg agtcaaagca gaagaaaacg       780
     aagaaaccaa tgcagaagtc tgttttcacc aagctcaccg acagtaagaa aacccctcca       840
     gggtcatctg ccttggcctt gacccccgct gtcaagccaa ccgcgcagct ggccaccacc       900
     agcaagacag atctcaccaa tatgttgcca ccaaagacca cactagtact cgcgaagaag       960
     accgtatctg agggatacga cacggacaca tcgacgacct ccaccaacag caaacgctcg      1020
     ctacgttccg gctccggggc gaagaaagtg cgaccaaacg acgaggacaa cgatatggga      1080
     gatgatgcgt tgtaaaatgg ctcaacacag ctataacatc gctactatca atataaacac      1140
     catcactaac actaccaaaa tcaacgcact gcgatctttt gcaagaacga tggaactcga      1200
     catcatcttc ttgcaagaag tagaaaacga gcaacttgtg ctgcctggct acaaccttgt      1260
     ctgcaatgtg gatcacgcga gaagaggaac agcgatcgca ctcaaggacc acatcgtttt      1320
     ctcacacatc gaaaaaagcc ttgacggacg gctaataacc gttcgtgtcc acaataccac      1380
     attgtgctgc atctacgctc cgtccggaac cgctctgcga gccgaacggg agcgtttttt      1440
     caacaacact cttgcgtact atctgcgaca tcaaaccgag cacgtgatag tgtcaggaga      1500
     ttttaactgt gtggtaagac aatgtgatgc aactggtaac aactacagtc cctctctcca      1560
     caccaccata caacaactac acctgcaaga tgtttgggtc aagcttcacc cgacctcccc      1620
     tggccctacc tatattaccc acaactctca gtctagactt gaccgtatct acgtcagccc      1680
     tggactgaat gaaggcctaa ggactatcgc cgctcacgca tgctccttta cgaaccacaa      1740
     ggcggtgacc gccagactct gccttcccat tctcggtaga gcacctggcc gtgggttttg      1800
     gtctcttcgt ccccatcttc tctctagaga acaccttgaa gagctgcagc tcagctggca      1860
     gttttggacc cgtcaacggc gaaatttccc gagctggatg atgtggtggc tctcgtttgc      1920
     taagccgaaa cttaaaaagt ttttctgctg gaagtcaaaa atcatttatg atgactatca      1980
     gcgtaaacac caacgactct atgctgagct ccgggcagca tacgatggct attaccaaaa      2040
     cccccgtatg ctgtccagga tcaatcgcat caaagcacaa atgctgacta tgcaacgaga      2100
     gttcacgcac atgtttgtac acatcaacgc aacacacgtc gccggtgagc cactgtcaac      2160
     cttccagctg ggagaaagaa gaagaaaaag aacaacaata acccgtgtac taaacgaccg      2220
     tggagaacac atcgacggta gcagagaaat cgaagagcac atggtcaacc acttcaggga      2280
     gctttacgcg gtagcagaag aggcggtgga tgcagaggat cgcttcgaat gtaaccgtgt      2340
     gattcccgct ggagacgaag cgagcgaggc ctgtatgagc gagataacaa cagccgaaat      2400
     atattcggcg atcaaagcaa gtgcgtcaaa aaaaagtcct ggtcccgatg gtctgccgaa      2460
     ggaattctat cttcgggcct tcgatatcat ccacagagaa ctcaacctgg tcctcaacga      2520
     agctctatct tcgaactttc ccccagagtt cgtcgatggt ataattgtgt tggtgaagaa      2580
     gaaaaacacc gacgagtccg ctcgctcata ccggccaatc tcgctgctaa atttcgacta      2640
     taaaactctc tcccgcatcc tcaaggggag gctggagaac gtgatgaggg cccacaacat      2700
     tctcagcgac ggccaaaaat gctccaactc caaccgcaac atttttcagg caactctttc      2760
     tctgaaagac cggatcgtac agctgaaaca acacaaaaag agagctaaac ttatcagctt      2820
     tgatcttgcc tcagcatttg atctcgtatc gaggagcttt ctgttcacca cgatgcggtc      2880
     tctcgggttc aacacgaact tggtggacct gctgaagcga atcggcgatc tatcgtcatc      2940
     tcgcttgctc gtcaacggaa atctctcggc agccttcccc atccagcgct ccgtccgaca      3000
     aggggacccc ttgtccatgc acctgtttgt actgtatctt cacccactgc tgagccgact      3060
     gcaacaggtc gctggggacg atctcgtagt cgcgtacgcc gatgatgtca gtgttatcgc      3120
     cacctccaca cacaaaatag agatgatgag agaaactttc gatcgctttc gcactgtgtc      3180
     cggtgcgata ctcaacacca gaaaaaccat ctctatagac gttggcttta tcaatgggaa      3240
     ccccctacac gttccatggt tgcaaactgt agacacggtt aaaattctgg gagtgatttt      3300
     tgctaattgc gtccgacaaa tggtccaaat caactgggac actcttgtga ccaaattcgg      3360
     acagcaggtg tggatgcatt ctatgcgcag tttgacctta caccaaaagg taacactact      3420
     aaacaccttc atcaccagta aaatctggta tctctcctca accataccac cgaatgctgc      3480
     acacacagca aaaatcacat ctacaatggg tagctttckc tggagacggt taccagcccg      3540
     catcccaatt caacagctcg cacgacacat csaaaaagsg ggattmaaac tacaactgcc      3600
     ggcgatgaaa tgtaaggcgc tgctcatcaa tcgtcatctc aacgagattg actgcatgcc      3660
     gttctacaaa tcgatcgtgt tcccagaaaa cccaacgcaa ccacgtcccg ctgtgcctga      3720
     cttaaawcgc tgctccagaa cctcccacgg ttacctgctc aacttcaaga tcgtccctct      3780
     tctgacctca tccaccaaca ttatctggag ttgaccgatc gaccaagggt tgagcggaac      3840
     accccgacag ctgactggca gagaatctga gaaacatcgc ctcgaaacgg ctctcttcct      3900
     ctcagcgaag cgagctttac cgtttcgtaa atgagaagac cgagcaccga cgtctactac      3960
     atgtgatgca gcgagtagac ggaggatact gcacacattg caattcgcca gtggagactc      4020
     ttcaacacaa gtttagmgaa tgtaatcgtg ttcgtgcagc gtggcagctt ctacagcaga      4080
     aagttgccgc ggttctcaat ggatggcgac gattaacctt cgaagaactt ttgcgaccag      4140
     cgctgagaaa catcggacca gtgattagaa acaagattct taaattattt gtgacstaca      4200
     ttagtttcat caataatgca gaaggtagaa tcgatattag tggacttkaa tttgccatga      4260
     tcactgaaac gtgaatcaat aatgtaaata tttcataaat tcaacaaaat aaaaccaaga      4320
     ctaaaaaaaa                                                             4330
//
ID   L1-1_CQ     repbase;    DNA;    INV; 4894 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4894
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 131-131 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..1610
FT                 /product="L1-1_CQ_1p"
FT                 /translation="MSSVRIRENTFKLCLKNFPKRPTYEEIHAFVHDKVGL
FT                 KPTQVTRLQMNHSQNCVHIKCVDLKTAQDAVINHNDRHELVVDKKRIKVRL
FT                 MMDDAGVEIKIHDLSENIRNEEVAAYLKQYGDVLSVRDVVWSESFKYKGVN
FT                 TGVRVAKVVLRRHIKSFVTILGETTMISYRTQPQTCRHCHNQLHPGSSCVE
FT                 NKKLLGQKQDLNKRLDLARNQPSAGSSYADVLGRMEEAATPLMPQFTPTNL
FT                 TQLHEQLRGVAVEGVEASSSLSATVPSPPPRAEGDVSSTVVPMEQSAIEQA
FT                 VIEQSVFEQSAIEQAVIQQAAIQQAAIQQAAIQQAAIEQSTIEQAKIEQAA
FT                 IEQSAIQLAANEQASNEQPTNEQAANEQAAIEQSELDQSAMELDAQSDEVK
FT                 KDGISSVPNDQSTQQAEGEMSVEADACSSSVSPFVFTPPLPAPSLPNDPLM
FT                 QISDSESTTDSSQEVDGAPFQKVNRKKRGRPKKPKLEA"
FT   CDS           1635..4838
FT                 /product="L1-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSNNPLSYNIASININAISNENKLQALHTFLRLQDLD
FT                 IVLLQEVENPNMCIPGFIVITNVDSARRGTAVALKSHIPYSNVQRSLDSRI
FT                 ITVKLGSSVTICNVYAPSGTQNQSAREFLFRHSLPFYLQNSAPNLVVGGDF
FT                 NCVISTKDATGCNNFSNSLKRFIDSQNLVDSWEHLNRNAVAFSFVRPNSAS
FT                 RLDRIYLSHSLAPHLRSTDFFATCFSDHKAFKVRCCLPDLVGNGHGRGYWS
FT                 IRSHVLTEENLAEFEEKWTRWLRERRNYTSWLGWWIECAKPKIRSFFRWKT
FT                 NQAFREFHATNELLYARLRRAYDELLLNPGSTAEVNKIKGEMLLLQNRFSK
FT                 AFERINDKFVAGEKISSFQLADRNTRKKKSAIDSIRHRNRLLTDPAEVQNH
FT                 ILDYYKTLYSLENAAPNTNFPTNRAIPPGSDSNERMMEEITTEEIYFAIKS
FT                 SASRKSPGSDGVPKEFYLRAFDIIHRQLNLILNEALCGNIPSNFVEGVVVL
FT                 AKKKTDEDTIKAYRPISLLNFDYKLLARILKQRLEKVMEENHILNAAQKCS
FT                 NQHRNIFEALNAVKDRVAEFNCRKRSGRLISFDLDHAFDRVSRSFLLVVMR
FT                 SMNFHPGFVSLLDKIMSMSSSRLLINGNLSSPFPIQRSVRQGDPLSMHLFV
FT                 LYLHPLLEKILQICDNPHELVVAYADDISVIVADDNKLDQIKQAFADFGLC
FT                 SGAVLNTNKTVSINIGRQQSGRRTPSWLNVSDSVKILGISFFNSLKQTINF
FT                 NWGEVIRKTSQLMWIFRPRVLTVFQKVILVNTYITSKLWFMASILSIPNAA
FT                 VARMTSQIGSFIWERYPTRVAMEQLGLPIDQGGLNLHLPMQKCKALLINRF
FT                 VHCQTNMPFAESFGSQLKNPPNPAGVPALYPCLKMLARELAYLPPRLAENP
FT                 STTSLLSFYREKANTPKIIEENQAISWKRVWRNIRCRELTSAEKSSYYLLI
FT                 NQKIPHAALLFRQNRVSSNFCEMCPLXVEDLEHKFSQCVRTVHLWDFLKSK
FT                 LESILNRRVTFKTLVLPEMKNVSPAAKNKALKMFITYVNYVLEATSSLTVG
FT                 ALEFVLQCNCL"
XX
SQ   Sequence 4894 BP; 1390 A; 1258 C; 1123 G; 1121 T; 2 other;
     gttaggtcca agcactcgcc gcgatcagac gtatttctat aacagctccg cgttaaattt        60
     ttatcgttta tcgcatcgca cacttcggtg ttgctttgcc ggctcgtcag ccgcctgacg       120
     acagtgcaat cttttcgcat atcgtgccag attttgcgaa catgtccagt gttcgaatcc       180
     gcgaaaacac tttcaagctg tgcttgaaga actttcccaa gcgaccaaca tacgaagaaa       240
     ttcatgcatt cgtgcatgat aaagtggggc tcaagcctac ccaggtaacc cggctacaga       300
     tgaaccactc tcaaaactgc gtacacatca agtgcgtaga cctgaagact gcccaagatg       360
     ctgtgatcaa ccacaatgac cgccacgagt tggttgtcga caagaagcgg atcaaggtgc       420
     gacttatgat ggacgatgcg ggggttgaga tcaaaatcca tgatctgtcc gagaacattc       480
     ggaacgaaga ggttgctgcc tacctgaaac agtatggcga cgtgctgtct gtcagggatg       540
     tagtttggag tgaaagcttc aagtacaaag gggtcaacac cggtgtacgg gtcgcaaaag       600
     tggtgctacg aagacacatc aagtctttcg taacaattct tggtgagacc actatgatta       660
     gctatcgcac acagccacaa acgtgtcgcc attgccacaa tcagttacat cccggcagtt       720
     cttgcgttga aaacaagaaa ttgctaggac aaaagcaaga cctgaacaaa agacttgacc       780
     ttgctcgcaa ccagcccagc gctggatcaa gctacgcaga tgtgttgggt cgtatggaag       840
     aggccgcgac tccactgatg ccccagttca caccaacaaa cctgacacag ctacatgagc       900
     agttacgcgg cgtggcagta gagggagtcg aggcaagctc ctccctctca gcaaccgtcc       960
     cgagtccccc acctcgcgcc gagggagatg tgagcagtac agttgtacca atggagcagt      1020
     ccgcgatcga gcaggccgtg atcgagcagt ccgtcttcga gcagtccgcg atcgagcagg      1080
     ccgtgatcca gcaggccgcg atccagcagg ccgcgatcca gcaggccgcg atccagcagg      1140
     ccgcgatcga gcagtccacg atagagcagg ccaagatcga gcaggccgcg atcgagcagt      1200
     ccgcaatcca gctggccgcg aacgagcagg cctcgaacga gcagcccacg aacgagcagg      1260
     ccgcgaacga gcaggccgcg atcgagcagt cggagttgga tcagtcagcg atggagcttg      1320
     atgcacaaag cgatgaggtg aagaaagatg gaatctcgag cgtgccaaac gaccaatcca      1380
     cccaacaggc agaaggtgaa atgtcggtag aagccgatgc ttgttcttcc tcggtgagtc      1440
     cgtttgtctt cactcctccc ctcccagctc cttcccttcc caatgatccc ctaatgcaga      1500
     tttctgactc agaatcaacc actgactcct ctcaagaggt ggacggtgct ccgttccaga      1560
     aggtgaatmg gaaaaaacgg ggccgcccaa aaaagcccaa acttgaagcg tagacccact      1620
     cctccaaccc cacaatgtct aataatccct tgagctacaa catcgctagc ataaacataa      1680
     atgctatatc taatgaaaac aaactccaag ccctacacac tttcctccgt ctccaagatc      1740
     tagatattgt tctcttacaa gaggtagaaa acccaaacat gtgtattccc ggattcattg      1800
     tgataacaaa tgtcgacagt gcaagaagag gtactgctgt tgcccttaaa tcacacattc      1860
     cttactctaa tgttcagcgc agtttagata gccggattat cacagtcaaa cttggtagtt      1920
     cggttactat ctgtaatgtc tacgcaccat ccggcacaca gaaccagtcc gcccgtgaat      1980
     ttcttttccg acactctcta cccttctatc tacagaactc tgccccaaat cttgtcgttg      2040
     gtggtgattt caattgtgtg atatccacca aagacgcaac aggttgcaac aactttagta      2100
     attctctaaa aagattcatt gatagtcaaa acttagttga ttcatgggaa catttgaata      2160
     gaaatgctgt tgcattcagt tttgtccgtc caaattcagc ttcgcgcttg gaccgaatat      2220
     atttatccca ttccctcgct ccgcatcttc gctcgactga tttctttgca acctgtttct      2280
     ctgatcataa agcgtttaaa gtgagatgtt gtctgcctga tctcgtcgga aatggccacg      2340
     gtcgagggta ctggtcaatt cgctctcatg tcctcacgga ggaaaacttg gctgagtttg      2400
     aggaaaagtg gacgaggtgg ctacgcgaac gacgaaacta cacgagttgg ctgggatggt      2460
     ggattgaatg cgccaagccc aagattcgca gtttcttcag atggaagaca aatcaagcat      2520
     tccgagaatt ccacgcaacg aacgagctcc tgtacgccag gctgcggagg gcatacgacg      2580
     agctgctgtt aaacccagga tcaacagctg aagtgaacaa gatcaaagga gaaatgttgt      2640
     tgctgcagaa tcgtttttcc aaggcgttcg aaaggatcaa cgacaagttc gtcgctggag      2700
     agaagatctc gtcattccag ctcgcagatc gaaacacacg taaaaagaaa agcgcaatcg      2760
     actcgatccg acatcgaaat cgtttgctca cagacccagc ggaagtccaa aaccacatcc      2820
     tggactacta caaaacactc tactcgttgg aaaatgctgc cccgaacacc aacttcccta      2880
     caaatcgtgc cattccgccg ggatcggaca gtaacgagcg gatgatggag gaaattacca      2940
     ctgaggagat ctacttcgca atcaagtcca gcgcgtcacg gaagtcacca ggaagcgacg      3000
     gtgtccctaa ggagttttac ctgagagcat tcgacataat ccataggcaa ctgaatctaa      3060
     tactaaacga agcgctttgt ggcaacattc cgagcaactt tgttgaaggg gttgttgtac      3120
     tggcgaaaaa gaaaaccgac gaggacacga tcaaagctta caggccgata tccttgctaa      3180
     actttgatta caagctactg gcgcgtatcc tcaagcaacg tctggagaaa gtcatggaag      3240
     aaaaccacat cttgaatgca gcacagaaat gctcaaacca acatcggaac atcttcgaag      3300
     ccctaaatgc cgtaaaagac cgtgtagcag aattcaactg tcgaaaaaga tcgggcagac      3360
     tcatctcctt tgacctagat cacgccttcg accgtgtgag taggagtttc ttgctggttg      3420
     tgatgcggag catgaatttt caccccgggt ttgtaagtct tcttgataag atcatgagta      3480
     tgtcgtcgtc tcggctcctc ataaacggaa atctgtcctc cccattcccc atccaacgtt      3540
     ccgtgcggca aggtgatccg ctaagcatgc acctttttgt cctgtaccta catcctctcc      3600
     ttgaaaaaat cctccaaatc tgcgacaacc ctcacgagtt ggtggttgcc tacgcggacg      3660
     acatctccgt tatcgttgcg gatgataaca agctggacca gatcaagcaa gcgtttgcag      3720
     atttcggact gtgttcggga gctgtgctga acaccaacaa aaccgtctct atcaacatcg      3780
     gtaggcagca aagcggacga cgaacaccca gctggctgaa cgtcagcgac tcggtgaaga      3840
     ttctcggaat aagtttcttc aactccctca agcaaacaat caacttcaac tggggggaag      3900
     tcatacggaa gacctctcag ctgatgtgga tcttcagacc acgggttctc acggtcttcc      3960
     aaaaagtgat tctagtgaat acttatatca cctccaagct ttggtttatg gcctcgatac      4020
     tcagcattcc caacgcagcc gttgcaagga tgacgtcgca aattggaagc ttcatttggg      4080
     agcgctaccc gacacgtgtg gcaatggagc agcttggtct tccaatcgac caaggaggcc      4140
     tcaacctgca tcttccgatg caaaaatgca aagctttgct gatcaaccgc tttgtgcact      4200
     gccaaaccaa catgccgttt gctgagtcct ttggaagcca gctgaaaaat cctcccaacc      4260
     ccgctggcgt tcccgcactg tacccttgcc tgaaaatgct ggcacgggag ctagcctacc      4320
     tcccacctcg gcttgccgaa aacccttcaa ccacatcgtt gctatctttc tacagagaaa      4380
     aggcaaacac accgaagatc attgaggaaa accaagccat ctcatggaaa agagtttggc      4440
     gcaacatcag atgtagggaa cttacgtctg cagagaaatc ttcttactac ctgctcatta      4500
     atcagaagat accacatgca gcacttttgt ttaggcaaaa ccgagttagt agcaactttt      4560
     gcgaaatgtg ccccctagma gttgaagact tggagcacaa attttcacag tgtgtcagga      4620
     ctgttcactt gtgggacttt ctcaagtcaa aattagagtc gattttgaac aggagagtaa      4680
     catttaaaac cctagtgcta ccagagatga aaaatgttag tccagcagct aaaaacaagg      4740
     ctctaaaaat gtttataaca tatgtaaact atgtgctaga agccactagc tcgttaacag      4800
     taggcgcact agaatttgtt ttacagtgta attgtctcta aaatgtaaag tgaaaatgtt      4860
     ctaataaacg tgtttaaaaa aaaaaaaaaa aaaa                                  4894
//
ID   L1-2_CQ     repbase;    DNA;    INV; 4917 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4917
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 132-132 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1606
FT                 /product="L1-2_CQ_1p"
FT                 /translation="MAQVRSRENTFKVDLSNFPKRPSIEELQKFVLVKLGL
FT                 AVGQVKRFQVNHAQNCVHVKCSELKVAQDTVAMHNGKHVMEINKTKVTVRL
FT                 VMEDGGVEVKIHDLSENVTNDDIVAFLRHFGDVLSIREVSWGEGFPLRGMS
FT                 SGIRVAKMILRRHIKSFATILGESTLISYRGQPMTCRHCTLTQHIGMSCVE
FT                 NKKLLGQKADLSARLKSASGSTSTSYASVLNGVAPDTNTLLPEFSGTILGP
FT                 VIPQRPIRPESTGTAPNAPQSGAATSATGHSADGSLNISGDGTSSVQTSGS
FT                 TDVAEHSAGSEASGGGTSSEVSNTLASETEVSAGSVATAIEGGALIDRPNE
FT                 SELASTSDMILIPLPPAAPAAEGDNKETEEMETESPSAADDAAELNTPHPK
FT                 LPCEEEDAEMPAVSDLASCESVSPFEFPAPIPVPIPHPDLKKTHSLSSISG
FT                 TESEGSARSGEFTEVKKKRRPGRPKKPKV"
FT   CDS           1639..4833
FT                 /product="L1-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNLPCSYNIATININAISNDNKIQSLKTFIRSTDLDI
FT                 ILLQEVENPNLALPGFNVLTNVDDSRRGTAIALKSHIRFSNVRRSLDTRII
FT                 AVTLRSMVTICNVYAPSGTVNAASRERLFNNTLPLFLQNCSDHCILGGDFN
FT                 CVIASKDATGTSNHSLALKNLTSNLGLKDAWEVLKANQIAYSFIRPNCSSR
FT                 LDRLYVSGAFVPGLRTAEYLVTSFTDHKAFKVRCCLPDQGRPTGNGFWSMR
FT                 AHVLTEENLEEFELKWNRWLREKQNFNSWIEWWIRCAKPRIKSFFRWKTNE
FT                 VFRRFNVANELLYGQLRAAYDNLTNNPAMVPEINRIKGKMLLLQNNFSKAF
FT                 ERLNDKFLGDEKLSTFQLGDRAGRKKNSTISSIKHQGRLLEDSAEVEDHIF
FT                 DYFRQLYSAEDVQLNRDFPSNRLVDPNSEANNRAMEEITTEEIFTAIQTSA
FT                 SRKSPGCDGIPKEFYVKAFNIIHRQLNLILNEALRGGFPEQFLDGVVVLSK
FT                 KKTNLETIKAYRPITLLNYDYKLLARILKVRLERIINENRILNSCQKCSNA
FT                 RRDIFEAVHAIKDRVVELNCKRKTGKLISFDLDHAFDRVDHTYLLSVLRSM
FT                 RINENLVALIGRLMCSARSRIIINGNLSAQFPIQRSVRQGDPLSMLLFVVF
FT                 LHPLLEKLLAICNHPKELVVAYADDISIILVDETKLAEVRRAFDDFGLCSG
FT                 ARLNIAKTTAVNIGPQRENSTGAGWTTVCDSVKILGVIYFNSLKRTIEENW
FT                 RETIRKTSYLMWLFKPRDLSIHQKVTLLNLFVTSKLWYMASVLSMPNACIA
FT                 KVTSQIGQFIWGRYPTRVSIDQLALPVAEGGLNLHVPKMKSKALILNRFIR
FT                 GSSETPFAASFVSQLDNPPNLSGIPALYPCLKAIARELPYLPQRLIGQPTA
FT                 TELHGYFRRTLTTPKIMNEHPAVAWRSVWRNIRSRVLTSAEKTSFYLLVNR
FT                 KIPHAELLFRQNRLDSGTCQHCLGAVEDLEHKFAKCTRVRHLWNFIQSKLG
FT                 AILNRRVSFNLFLIPELNNIEANSKSRALKLFIFYINFVLDPDCSFTLASL
FT                 DFAVSLVC"
XX
SQ   Sequence 4917 BP; 1316 A; 1268 C; 1230 G; 1103 T; 0 other;
     tagtttgcgt caggctctcg acgcaataag acgtgtgcat cggagctctt ctgcgcgctt        60
     tgggttatcg cgtgtgtcgg ccatctgcac cacttgctgg tgcagatttc gcgtgtttaa       120
     gcgtcagttt tcaactgacg accggtttta atttgcgatc cggattacat ccgaactcgc       180
     aacaatggct caagtgagat cgcgtgaaaa caccttcaag gtggaccttt cgaactttcc       240
     gaaacgaccg tccattgagg aactgcagaa gtttgtgcta gtgaaactag gactggccgt       300
     tggccaagtg aaaaggttcc aggtgaacca tgcgcagaat tgcgtacatg tgaagtgtag       360
     tgagctgaag gtggcacaag acaccgttgc tatgcacaat ggcaaacacg tgatggagat       420
     caacaagacc aaggtcacgg tgcgcttggt gatggaggac gggggagtgg aggtaaagat       480
     ccatgacctc tctgaaaacg tcacgaacga cgacattgtt gcgttcctgc gccattttgg       540
     cgacgtgctc agcattcgcg aggtgtcatg gggagagggt ttccctctcc gtggcatgtc       600
     atcaggcatc cgggtggcga agatgatcct tcgccgccat attaaatcgt tcgcaacgat       660
     tctaggagag agcacactaa tctcctacag agggcagccg atgacctgta ggcactgcac       720
     gcttacccaa cacattggta tgtcgtgcgt ggagaacaaa aaacttctcg gtcaaaaagc       780
     cgatctcagc gcccgcctga aaagtgcgag cggatcaacc tcaactagct acgctagtgt       840
     gctgaacggt gttgcccctg acaccaacac attgctgcca gagttcagtg gcaccatcct       900
     cggtccggtc atcccgcaac gaccgataag acccgagagc acgggcacgg cacccaacgc       960
     ccctcagagc ggagcggcaa cgagcgctac cggacactca gctgatggat cgcttaacat      1020
     cagcggagac ggtacatcgt ctgttcagac aagcggctcg acggacgttg ccgaacactc      1080
     agctggctct gaagctagcg gaggcggcac gtcgtccgag gtttcgaaca ccctcgcaag      1140
     cgagacagag gtctcagctg gatcagttgc gaccgccatc gaaggtggtg cgttgatcga      1200
     tcgccctaac gagtctgagc tcgccagcac aagcgacatg atactcattc cactcccccc      1260
     tgctgcacct gctgctgaag gagacaacaa agaaaccgaa gaaatggaga ccgaaagccc      1320
     gtctgctgcc gacgatgctg cagaactcaa cactccgcac ccgaagctgc cgtgtgagga      1380
     agaggacgca gaaatgccgg ccgtgtcgga cctcgctagc tgtgagtcgg tgagtccttt      1440
     cgaattccct gcacctatcc ctgtccctat ccctcatcct gacctcaaga agacgcactc      1500
     gttgagttcc atctctggaa ctgagagcga gggaagtgcg cgctctggtg agttcactga      1560
     ggtgaagaag aagcgacgac cgggtcgtcc aaaaaagcca aaagtttagt cacctagcac      1620
     cctgcggctc ccactgcaat gaatctgcct tgctcctata acatcgccac catcaatatt      1680
     aatgccattt cgaacgacaa caagatccaa tccctgaaaa cctttattcg ctcaactgac      1740
     cttgacatta tactgcttca agaagttgaa aacccaaacc tagctctccc agggttcaac      1800
     gttttaacga acgtggacga cagtaggaga ggaacagcaa tagctttgaa atcgcacatc      1860
     cgtttctcga acgttcgacg cagcctcgac acgcgtatca ttgccgttac cctgcgaagc      1920
     atggtgacca tttgcaacgt atacgccccc tccggaaccg tgaacgccgc atcccgtgaa      1980
     cgcctgttca acaatacgct tccccttttc ctccaaaact gctcagacca ctgcattctt      2040
     ggcggtgact tcaactgcgt gattgcttcg aaggacgcaa ctggtaccag caaccacagc      2100
     ttggcgctta aaaacctaac cagcaacctg ggacttaaag acgcgtggga agttctgaaa      2160
     gctaatcaga tcgcgtacag cttcatcagg ccgaactgct cctcccggct tgaccgattg      2220
     tacgtttccg gtgcatttgt accgggcttg cgcacggcgg agtatctcgt gacgtcgttc      2280
     acggaccaca aggcgttcaa agtgcggtgc tgtcttcccg atcaaggacg gccgaccgga      2340
     aatggtttct ggtcgatgcg tgcgcatgtg ttgactgaag agaacctcga ggaattcgag      2400
     ctcaaatgga atcgctggct acgagagaag cagaacttca acagctggat cgagtggtgg      2460
     attcgctgtg ccaaacccag aataaagagc ttcttccgct ggaagacaaa cgaagttttc      2520
     cgccggttca acgttgcgaa cgaactactg tatggacaac tccgagcagc ctacgacaac      2580
     ttgaccaaca atccagcgat ggttcccgaa atcaaccgta taaaaggaaa gatgcttctg      2640
     ctacaaaata atttctcgaa agccttcgag cgcctgaacg acaagtttct gggcgacgaa      2700
     aagctgtcga cattccagct aggtgaccgg gccggtcgca agaagaacag cacaatctct      2760
     tctatcaaac accaaggaag acttctggaa gactcagcgg aagtcgaaga tcacatcttt      2820
     gactatttcc gccagctgta cagtgctgaa gatgttcagc tcaaccggga ctttccgagt      2880
     aatcgactag tggacccgaa ctcggaggca aacaaccgtg cgatggaaga aattacaacg      2940
     gaagaaatct tcactgctat ccagacgagt gcttcccgga agtccccagg atgtgatggc      3000
     atcccgaagg agttttatgt caaggcgttc aacattattc atcgacagct caacctgatc      3060
     ctgaacgagg cgctgcgggg aggtttcccc gaacagttcc tggacggtgt agtggtcttg      3120
     agcaagaaga aaacgaacct ggaaaccatc aaagcgtaca ggcccattac cctgctgaac      3180
     tacgactaca aactgctggc gcgcattctg aaggtgcgac tggaacgaat aataaacgag      3240
     aatcgaatcc tcaactcgtg tcagaagtgc tccaacgcaa gacgcgatat cttcgaggct      3300
     gttcatgcga taaaggacag ggttgtggag ttgaactgta agcgaaaaac tgggaagcta      3360
     atctcgttcg atctggacca tgcgttcgac cgggttgacc atacgtacct gctaagcgtg      3420
     ttgcgcagca tgcgcatcaa cgaaaatctg gtggctttga ttggtaggct gatgtgctcc      3480
     gcccgatcac ggataatcat caatgggaat ctctccgctc aatttcccat tcagaggtct      3540
     gtgcgccaag gtgatcctct tagcatgctg ctctttgtcg ttttccttca tcctctcctc      3600
     gagaaacttc ttgctatttg taaccatccc aaagagctag tggtggccta cgcggatgac      3660
     atttccatca ttttggtgga cgaaacgaag ctggctgaag tcaggcgggc tttcgacgac      3720
     ttcggactgt gctcgggggc caggctgaac atagcgaaaa caactgcagt gaacattgga      3780
     ccgcagcggg agaactcaac aggagcggga tggacgacgg tttgcgactc tgtgaagatc      3840
     ttgggagtta tctacttcaa ctcgctgaaa cgaacgatcg aggagaactg gagagaaacc      3900
     atccggaaga cgtcctacct catgtggctt ttcaagccac gtgatctctc catccatcaa      3960
     aaggtcactc ttttgaattt gtttgtgacg tctaagttgt ggtatatggc atcagtgctt      4020
     agcatgccaa acgcttgcat agccaaagtc acgtcccaga ttggccagtt tatctgggga      4080
     agatatccga ctcgggtatc cattgaccag ctagctctcc cggtagcaga gggaggacta      4140
     aacctgcacg tgccaaagat gaaaagcaaa gctttgattc taaaccgctt tatcagagga      4200
     tctagcgaaa cgccattcgc agcttccttc gtgagtcagc tggacaaccc accaaacctt      4260
     agtgggattc cggcgctgta cccgtgtctg aaagccatag ctcgagaact gccatactta      4320
     ccgcaacggc tgattggaca accaacggca acagaactcc acgggtactt caggagaaca      4380
     ctaaccacgc caaaaatcat gaacgagcac ccggctgtag cgtggaggtc agtctggcgc      4440
     aacatcagga gcagagtact cacatctgcg gagaagactt ctttctattt gctggtcaac      4500
     cggaaaatac cacacgctga attgctgttc cgacagaaca gactggacag tggaacgtgt      4560
     caacattgtc tcggtgccgt ggaagatctg gagcacaaat tcgcgaagtg tactcgagtg      4620
     agacatctct ggaacttcat tcaatcaaaa ttaggagcaa ttttgaatcg aagagttagt      4680
     ttcaatttgt ttttgatacc agagctcaac aatattgagg ctaacagtaa aagcagggcg      4740
     ctaaagcttt ttattttcta tataaatttt gtgttagatc cagattgttc ttttactcta      4800
     gcatcactag atttcgcagt tagtttagtt tgttaaagag ttctttaaaa actacaaaaa      4860
     catgtacatt taaacaaaat gatctaaata aacgttttta caaaaaaaaa aaaaaaa         4917
//
ID   L1-30_AAe   repbase;    DNA;    INV; 5537 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-30_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5537
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1383-1383 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2326..5499
FT                 /product="L1-30_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MQMFSYKIATINVCNISNQTKLDALRSFIFSSELDII
FT                 FLQEVQSEQFSMPGYTVIFNVDADQRGTAIVVRDQFNVHNIEKSLDNRIIS
FT                 LRIGPITFLNIYAPSGAAQRTAREDFFNSSVAHYLHHSTESVVLGGDFNAV
FT                 VNPKDATGCSNISPMCKRLMNSANLVDTWEALNGQRIEFSFIRSNTASRID
FT                 RLLISNTMKFQLRTAHFAATSFSDHKAYIVRIVMPHLGTPSGRGMWRLQPH
FT                 ILDDSEILNELSRKWVYWVRARSNYSSWVEWWMLHTKPKIISFLKWKTSTV
FT                 YREFRDAIELYRRFLKEAYDNYHGNPQQVGEIHHIKAQMLRLQRNFSMNLK
FT                 KCNETYISGESTTLFHVAQVHGKRSKTSIPTLLTENGIEIHDQSQIKESIR
FT                 AYFENLYSSVDDEPSIDFRPSKSIPQNNTANENLMREITQDEILXGIKGSS
FT                 SRKSPGADGLPKEFFLKTWRIICVEFTNVINDVLQGKAMKDFFNGILVLVK
FT                 KKGSDKSARGYRPISLLNFDYKVLARILKQRMNCLLPLVLSENQKCSNGKR
FT                 TIFEATSRIYDKICQLKHFRRSSLLVSFDLDHAFDRVSHTFLKQTMDQMNF
FT                 NPSFINLLSTIWNQSYSKILVNGHLTQEIKITRSVRQGDPLSMHLFVLYLQ
FT                 PLLDTISRKFPNAMMNAYADDISMFLDDEQAVMQVVTIFNDYGLASGAKLN
FT                 KQKTVAVMIGSVNLTEDTEWLNIETFVNILGVRYGDNIKQAQKLNWQSVLN
FT                 GLRTRLWFHHPRKLNLIQKIILINTYINSKIWYMASNIPLTKGYATKLKAE
FT                 IGKFIWHGQTLQRIAFANLILPKARGGLNLHCPETKAKALLLNRMLNLXHL
FT                 LPFAASLLQNSNNTVPPMFNHISVLKTELAQLPDSLVSTPTSKGIYLHFLE
FT                 MKPDPGFTSSSQRNWKIVFKHLHSKNLTSTQRANWFSIMHKKIKHRELLFQ
FT                 RGVSDNPYCEICPGEVETTVHKLFRCQSTRGIWRYLRRQILLQESSLMRLE
FT                 PEEFMYPCLRNINQASKDYIIKLLGIFFSYHIETPENLIGLGNFIFYLNIN
FT                 K"
FT   CDS           join(145..1206,1185..2318)
FT                 /product="L1-30_AAe_1p"
FT                 /translation="MDDYRKDSVYLDFSGMPIRPKLEKVHELISKKIQLDM
FT                 SKVNCIQPSMTKARVIIELKSQAYVEELVSEHSSKHTVEQNNKEYAIPIVP
FT                 YDNAIEVRIADLPSYFSTEMIAKHLAPYGEVVSTQEEVWKNFWPGLSTGVR
FT                 LVRMRIRKPIPSYIPMTTHTAYITYRNQIRTCRYCVRPLHIGRTCNEARKE
FT                 QGQDINSRLTAAQVVQGIIPPSSSNVQTNVPQPSSNTPSTEKEIDVQTSDE
FT                 EMNDVTNTNLVTPPTDRVMRSSTKAQSRPSSLSRFPPACTQAAKPSRTSSP
FT                 PSNKATSENQDPTADFVISDDSEEALNAPKRHRSQQPTENPETPFLEIKRK
FT                 SRSRTHNSSSRDTQFFFPVSFIMGICLAEAQSDTATNLKKLSTLSFTILRY
FT                 SLVWRHNLPSLADITNDEGFSYCEVSLSICPAEVDTATNLKQIPHFFTSTY
FT                 RHRGAAPHNTQESQHWPTSSHFSASKTPQSKVNINNGQTTVSEGYSLCEVS
FT                 PSICPTEANVDAAALENLTLPVATPFLCCTRRITWRSHNMEWLSHFTLSLD
FT                 LIVRLLYCSPLLFCNLGSTSSEITYHQHKSLNELVNECLTITQKRKSHNFF
FT                 NDGGNGNGSYTVSEGYIPSKVSPSICPTEANVDTAALEENSLLVETQPTTH
FT                 PEIYYCEFTFEIQTTSSSLRVCIETNSAIHANQVSENNVQNKNIAMTMNPI
FT                 PEQLICIVSVLVTIRDRERTQERSIRWDSSKY"
XX
SQ   Sequence 5537 BP; 1831 A; 1241 C; 1080 G; 1382 T; 3 other;
     agttgacatt tagctttcgt gtcggtcaga cgttttcgag attatcgcta agtgaaaaca        60
     atcgaggtga tagtgccggc ggacgaagtc ctaaaggctt tacgcaaaaa gtgttaggcc       120
     ctgtgggggt ctggtcattc cactatggac gactaccgca aggactccgt ttacctggat       180
     ttcagcggaa tgccaatccg ccccaagcta gagaaagttc acgagctcat cagtaagaaa       240
     atccagctag acatgtcgaa agtcaattgc attcaaccca gcatgactaa agcccgagtc       300
     ataatcgaac ttaagtccca agcatacgtg gaagagctag tatccgagca tagttcgaag       360
     catactgttg agcagaacaa caaggagtat gcaataccaa tagttcccta cgacaacgca       420
     attgaggtta ggatagctga tttgccgtcc tacttctcta cggaaatgat cgccaaacac       480
     ctagctccat acggcgaggt tgtatcaaca caagaagagg tgtggaaaaa cttttggcct       540
     ggtttgtcaa ccggcgtccg gctggtgcga atgaggattc gaaagccaat tccatcctac       600
     ataccgatga ccacccacac agcgtatatt acttaccgca atcagattcg cacctgtagg       660
     tattgcgtaa gaccgcttca catcggtcgt acctgtaacg aggcacgcaa agaacaaggc       720
     caagacatta acagtcgtct tacggcagcc caagtggtgc aaggaataat cccaccatcg       780
     tcatcgaacg tacaaacaaa tgtcccacag ccatcttcaa atacacctag caccgaaaag       840
     gagattgatg tgcaaacgtc agatgaagag atgaatgacg taacgaacac aaatctcgtt       900
     actccaccaa cagatcgcgt aatgagatcg tccacgaaag cccaaagcag accgtcatcc       960
     ctttcccgtt ttccacctgc atgcactcaa gcagctaaac cgagcagaac atcatcacca      1020
     ccaagtaaca aagcaacatc agaaaaccaa gaccccacag ctgacttcgt tatctctgat      1080
     gacagcgagg aagcactaaa tgcaccaaaa cgacatcgat ctcaacaacc caccgaaaat      1140
     cccgaaacac cttttctcga aataaagcgc aagagcagga gtaggacaca caattcttct      1200
     tcccggtaag ctttataatg ggtatatgtc ttgccgaagc acaatccgat actgccacca      1260
     atctcaagaa actttcaact ttatcattca caatattacg atattcactc gtttggagac      1320
     acaacctacc atctttggcg gacatcacga acgacgaggg cttttcctac tgtgaggtaa      1380
     gccttagtat atgtcctgcc gaagtagata ctgccacaaa tctcaagcaa attccacact      1440
     tcttcacatc aacatatcgt caccgtggag ccgctccgca taatacccag gaatcacagc      1500
     actggccaac atcatctcac ttttctgcat cgaaaacacc acaatcaaaa gtcaacatta      1560
     ataacggaca aactactgtc agcgagggct attctctctg tgaggtaagc cctagtatat      1620
     gtcctaccga agcaaatgta gatgctgccg ctctagaaaa tttaacactc cccgtagcaa      1680
     cacccttttt atgctgtaca cgacggatca cttggagaag ccacaacatg gaatggctat      1740
     cgcacttcac tttatcactg gatttgattg tcaggctact atactgctca ccactgctgt      1800
     tctgcaacct tggaagtaca tcatcggaaa tcacctacca ccaacataaa tcactcaatg      1860
     aactcgttaa tgaatgcctc acaatcacac aaaaaagaaa gtcacacaac tttttcaacg      1920
     acggagggaa tggaaatgga tcatatactg tcagcgaggg ctacattcct agtaaggtaa      1980
     gccctagtat atgtcctacc gaagctaatg tagatactgc cgcactagaa gaaaactcac      2040
     ttcttgtaga aacacaaccg acgacacacc cggagatata ctactgcgag tttacattcg      2100
     aaatccaaac gacgtcttca tcactgaggg tctgtatcga aactaatagt gccattcatg      2160
     cgaatcaggt gagcgaaaac aatgtccaaa acaaaaacat tgcgatgacg atgaatccga      2220
     ttcctgagca gctgatatgt atcgtgtcag tgttagtgac tatcagagac agggaacgta      2280
     cacaagagcg ctctataagg tgggactcct caaaatatta gggtgatgca aatgttcagt      2340
     tataaaattg caacaatcaa tgtttgcaac atttcgaatc agacgaaact agacgcatta      2400
     agatcgttca tattttcatc tgagctagat attatttttt tacaagaagt gcaaagtgaa      2460
     cagttcagca tgccaggata tacggttata ttcaatgttg atgccgacca gcgaggtaca      2520
     gctatagtag tcagggatca gttcaatgta cataatattg aaaaaagcct agacaaccga      2580
     ataatttcac taaggattgg gcctataaca tttttaaata tctatgctcc ctctggtgcg      2640
     gcacagagaa cagcaaggga ggactttttc aattcttccg ttgcacacta tctccatcac      2700
     tccacggaga gtgtggtgct tggtggtgat ttcaatgcag tggtcaatcc aaaagatgca      2760
     actggctgca gtaatataag cccaatgtgc aagcgactaa tgaattcagc aaacttagtg      2820
     gatacttggg aagcattaaa tggacagcgg atcgagttct catttatcag atcgaataca      2880
     gcatcacgta tcgatcgatt gctaatttca aatacaatga aattccagct acggacagca      2940
     cattttgcag ccacatcgtt ctcggatcac aaagcatata tcgtacgcat tgtgatgccc      3000
     cacttaggaa cgccatcagg gcgtggcatg tggcgccttc aaccgcatat tctcgatgac      3060
     tccgaaattt taaacgagct ctccagaaaa tgggtttact gggttcgagc gagaagcaac      3120
     tatagctcat gggtagaatg gtggatgttg catacaaaac ctaaaataat ttcctttctg      3180
     aaatggaaaa cctcaaccgt ataccgagaa ttcagagacg caatagaatt gtatcgtagg      3240
     tttttgaaag aggcttatga taactaccac ggaaatccgc agcaagttgg agaaattcat      3300
     cacatcaaag cacaaatgct tcgtctccaa agaaatttct cgatgaattt aaaaaaatgt      3360
     aacgaaacgt acatctccgg cgaatccacg actttgttcc atgtagctca ggttcacggg      3420
     aaaagatcaa aaacgtctat cccaacgtta ctgacagaaa atggaattga aattcacgat      3480
     cagtctcaaa tcaaggagtc gatcagagcg tattttgaaa acctatactc ctcggtggat      3540
     gatgagccat ccatagactt caggccatca aagtcaatcc cccaaaacaa tacagcaaat      3600
     gaaaacctga tgcgagaaat aacacaggat gaaattctck cgggcatcaa aggaagctca      3660
     tctcggaagt caccaggcgc tgatgggctt ccgaaagagt tttttctgaa aacctggcga      3720
     ataatttgtg tcgaatttac caatgtcatc aatgacgttc tacaaggcaa ggcgatgaaa      3780
     gatttcttca atggcatctt ggttctcgtt aaaaagaaag ggagcgacaa gagtgcgaga      3840
     ggataccgac caatttcact cctgaacttt gattataaag tcttagcgcg aatcctaaaa      3900
     cagagaatga attgtctcct tccactagtt ttgtcagaaa accagaaatg ctcgaacggt      3960
     aaaaggacta tttttgaagc aacaagccgt atttacgata aaatatgtca actgaagcat      4020
     tttcgtagaa gttcgctgtt agtatcsttc gatctagacc acgcatttga tcgagtgagc      4080
     cacacgtttt tgaaacaaac tatggatcag atgaatttca acccgagttt cattaaccta      4140
     ctcagtacga tttggaatca atcctattca aaaattttgg ttaatggaca cttgactcag      4200
     gagataaaaa tcactcgatc ggtaagacag ggtgaccctc tgtctatgca cctttttgtt      4260
     ctgtatttgc aacctctact agataccatc tcacgaaaat ttcccaatgc tatgatgaac      4320
     gcctacgcgg atgatatatc gatgtttctc gacgatgagc aagcagtaat gcaagttgtt      4380
     actatattca atgattacgg actagcttct ggtgctaaac taaacaagca aaaaactgta      4440
     gcagtaatga tcggtagtgt taatctcaca gaagatacgg aatggttaaa catcgagact      4500
     tttgtcaaca tccttggcgt acgatacgga gacaatatca aacaagcgca aaagttaaac      4560
     tggcagtctg ttctaaatgg attgcgaaca cgactttggt ttcaccaccc aaggaagctg      4620
     aatctgattc aaaaaatcat acttataaat acatatatca actccaaaat atggtacatg      4680
     gcttctaata taccccttac aaagggatac gcaacgaagt tgaaagctga aatagggaaa      4740
     tttatctggc atggccaaac tttacagcgc atagcttttg caaatttgat tcttccaaaa      4800
     gctagaggtg gtctgaactt acactgtcca gaaacgaaag ccaaggcact tcttctaaat      4860
     cgaatgttaa atttgkctca cctgcttccg ttcgctgcaa gtctgttaca aaattcaaac      4920
     aatacagtac cacctatgtt taaccatatt agtgttttga aaacagagct agcgcaacta      4980
     ccggatagcc tagtcagtac gccaacatct aaggggatat atctacactt tttggaaatg      5040
     aaacctgatc caggttttac atcgagcagt caacgcaact ggaaaatcgt tttcaaacat      5100
     ctacactcta aaaatttaac atcaacgcaa cgagcaaact ggttttccat aatgcacaaa      5160
     aagatcaagc atagagagtt actgtttcaa cgaggcgtct cagataatcc ctattgtgaa      5220
     atttgtccag gagaagtgga aaccacggtg cacaagctgt ttcggtgcca aagcacaaga      5280
     ggaatttgga ggtacctacg aagacaaata ttattgcagg aatctagcct tatgagatta      5340
     gaaccagaag aatttatgta tccttgctta agaaacataa accaagcttc taaagattat      5400
     ataatcaaac tgttaggaat ttttttcagt tatcatattg aaacaccaga aaacttaata      5460
     ggactaggaa actttatatt ttatcttaat attaacaagt aattaagcaa atacaaataa      5520
     ggttttacaa aaaaaaa                                                     5537
//
ID   L1-31_AAe   repbase;    DNA;    INV; 5209 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-31_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5209
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1384-1384 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2002..5175
FT                 /product="L1-31_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPMFSYKIATINICNISNHTKIDALTSFVRVSELDVI
FT                 FLQEVQNDRLHLPGYMLFFNVDADQRGTAIAVRDQYNVHNVEKSLDNRIIS
FT                 LRIGTITFINIYAPSGALQRTAREDFFNSAVAHYLHHSTEHVVLGGDFNAV
FT                 VNPKDATGSSSISPMCKRLMNAAKLIDTWEALNGNTVEFSYIRSNTASRID
FT                 RILITSKMKVQLRTAHFAVTAFSDHKAYVVRIVLPHLGTPCGRGVWRLQPH
FT                 VLNDTEVINELSRKWIYWVRARRNYLSWIEWWVQFAKPKVISFLKWKTSIV
FT                 YRDFKDAIELYRSLLKEAYDNYHGHPEQLVTINRIKAQMLRLQRNFSSNFR
FT                 ANNETYISGESTTLFHVAQIHGKRSKTAISSLQTENGTETCDHSQIKETIR
FT                 SYFENLYSSEEAVPSMDFMPIRAIPENNQANENLMQIITQDDVLTAIKGSS
FT                 SRKSPGSDGLPKDFFLKTWQIIGFEFTNVINDALQGKATRQFYDGILVLVK
FT                 KKGSDKSVKGYRPISLLNYDYKVLARILKQRIHCLLPLVLSNNQKCSNGKR
FT                 TIFEATNRIYDKICQLKHLRQNALLVSFDLDHAFDRVSHQFLQQTMIRMNF
FT                 NANFVELLATIWNQSYSKILIDGHLTPELKINRSVRQGDPLSMYLFVLYLQ
FT                 PLLDAISRSFPNAVMNAYADDISMFLENERSLMKVVALFNDFGLTSGAVLN
FT                 KRKTLAVMIGNVDLTTDSEWLHIENYVNILGVKYGDNIKQAQKLNWQSVLN
FT                 GLRTQLWLHHPRKLNLCQKIILINTYITSKLWYMASNIPLTKGFATKIRAE
FT                 LGKFIWHGQTLQRIAFANLTLPKTRGGLNLQCPETKSKALLLNRLMNPADE
FT                 LPFLNSLLQNSSSSIPALFNHASLLQAELALLPERLINTPSSREIYHHYLE
FT                 LKPDPGFVSADQRNWKMIFKNLHNKHLSSAQRSNWFVVMHRKIRHRELLYQ
FT                 RGVVEDPYCETCPGELETTIHKLFRCQRVRNIWRYQRRQITNHVPELGRLE
FT                 PEDFVYPSLRNMNQTTKNYIIKILGLYFSYLVESPENSIDLDDFVFYLNIN
FT                 N"
FT   CDS           join(150..1199,1169..1999)
FT                 /product="L1-31_AAe_1p"
FT                 /translation="MDDYRKDSVYLDFSGMPARPKLDKVHELISKKIQLDM
FT                 IKVNCIQPSMTKARVIIELKSQAYVEELVADHSLKHTVELNNKEYAIPIVP
FT                 YDNAIEVRVADLPSYFSTETIAKHLAPYGEVLSTQEEVWKNFWPGLPTGVR
FT                 LARMRIRKPIPSYVPMTTHTAFISYRNQIRTCRYCVRPLHIGRTCNEARKE
FT                 LGHDINSRLTAAQVVQGIIPPSPAINATPPPPSSPDPENEMQTSDGETNST
FT                 ETTIGTAAAITNRLTATTSKHSSRPSSLSRHPLEQNTQAAGSSRSSSTLSH
FT                 KGIGEKSINTSEFSISDDGEETINAPKRHRSQQSSVIPEAPFQEGKRKSRS
FT                 RTNNTSREQEQNQQHFPIICAMASRIEILPKYINQQHLTENSFTTDITTNE
FT                 GSAFCQVSPSICPAEVHIDTAVILKTIPIAFLPSSLERGNSTELTMKSLQS
FT                 AHRHFPMSQIFNQHSMGKPIHHYRDPALFRYRQRLPRHGQRGLSLCEVSPS
FT                 ICPTEACFDTAALENNALLVESKTPLHTETQPKVHPEKSLFNGCATTNETT
FT                 THSKTALIFTKHQTPRHSCDSGERKLLRSKQNINDDDTEYVLLDILVWFDV
FT                 CTHSIVSISARDRERFQVRCTFRLLLILG"
XX
SQ   Sequence 5209 BP; 1669 A; 1214 C; 1021 G; 1304 T; 1 other;
     agttgacatt ttgctttcgt accgtacgga cgtgtttgag acaatcgctt ggtgaaaaca        60
     tatcagttta tcgtgcctca gggcaaagtg taaaaggcgt tacgccgaaa agtgcggtcc       120
     aatcggaatc cggtcattcc atcgctaaaa tggatgacta ccgtaaagat tccgtgtatc       180
     tagactttag cggcatgcca gcccgcccta aactagacaa agttcatgag ctaatcagca       240
     agaagatcca gctagacatg atcaaagtca actgtatcca gcccagcatg actaaagcac       300
     gagtcattat cgagctwaaa tctcaagcat atgtggagga gctggtagca gaccacagct       360
     tgaagcatac tgtcgaacta aacaacaagg aatatgctat tccaatcgtc ccatacgaca       420
     atgcaattga ggttagagta gctgacctac cgtcctattt ctcgactgaa actattgcta       480
     aacacctagc tccgtatggc gaagttcttt ccacgcaaga ggaggtgtgg aaaaatttct       540
     ggcccggttt acccacggga gtaagattgg caagaatgag gataaggaag ccgatcccat       600
     cttatgttcc gatgacgaca cacaccgctt tcatttctta ccggaaccaa attcgcacct       660
     gccgttactg cgtaagacca ctccatattg gccgtacctg taacgaggca cgtaaagaac       720
     taggtcacga catcaacagc cgccttactg cggcacaagt agtgcaaggc atcatcccac       780
     catcgccggc aatcaatgct acgccaccgc cgcccagctc accagatcca gaaaacgaaa       840
     tgcaaacatc cgatggagag acaaacagca cagaaacaac aattggcacg gcagcagcaa       900
     taaccaatcg attaacggca acaacctcga agcactccag taggccttct tcgctttccc       960
     gccacccact ggagcaaaac actcaagctg ctggatcaag cagaagcagt tcaaccctca      1020
     gtcacaaagg aatcggcgaa aaatccatca acacttcaga gttcagcatt tccgacgacg      1080
     gcgaagaaac gatcaatgct cctaaaagac accgttctca acaatcttct gttatccctg      1140
     aagccccgtt ccaggagggg aaacgtaaga gcaggagcag aaccaacaac acttcccgat      1200
     aatatgcgca atggcttcac gaatagaaat acttccaaaa tacatcaacc aacagcatct      1260
     cactgaaaac tcattcacaa cggacattac gaccaacgag ggctctgctt tctgtcaggt      1320
     aagccctagt atatgtcctg ccgaagttca cattgatact gccgtcattc tcaagacaat      1380
     cccaattgct tttctcccat catcacttga acgcggaaac tctacggaac tcaccatgaa      1440
     atcactgcaa tcagcgcacc gacacttccc aatgagccaa atcttcaacc aacactcaat      1500
     gggaaaaccc attcatcact atcgcgatcc tgcactcttt cggtaccgac aacgactacc      1560
     acgacacggt cagcgagggc tttctctctg tgaggtaagc ccaagtatat gtcctaccga      1620
     agcttgtttt gatactgccg cactagaaaa taacgcactt cttgtagaat ccaaaacgcc      1680
     gctgcacact gaaacacaac cgaaggttca cccggagaaa tcactcttta atggatgtgc      1740
     gactacgaat gaaacaacaa cacattcaaa aaccgcacta atattcacca aacaccaaac      1800
     tccgcgccat tcatgcgatt caggtgagcg taaactactg cgatcaaaac aaaacatcaa      1860
     cgatgacgac accgaatatg tcctacttga catcttagtt tggtttgacg tctgcactca      1920
     cagcattgtc agtataagtg ccagagacag ggaacgcttt caagtgcgct gtacgtttag      1980
     actgctttta atattagggt gatgccaatg tttagctata aaattgcaac gatcaacatt      2040
     tgcaatattt caaaccacac aaaaatcgat gcattaacat ctttcgttcg tgtatcagag      2100
     ctagacgtaa tatttctaca agaagtgcaa aacgatcgtt tgcatttgcc aggatatatg      2160
     ctgtttttca atgtcgatgc tgatcaacga ggtacagcca tagcagtcag ggatcagtac      2220
     aatgttcata acgttgagaa aagcttagat aatcgtatta tttcattgag gattggaaca      2280
     ataacgttta ttaacattta tgcgccctct ggtgctcttc aaagaacagc tagagaagat      2340
     tttttcaact ctgccgttgc acactatctc catcattcca cggagcatgt ggtgctgggc      2400
     ggtgatttca acgcagtagt taatcctaaa gatgcaacag gtagtagcag tataagtcct      2460
     atgtgcaaac ggcttatgaa cgcagccaaa ctcattgaca cgtgggaagc gttaaatggg      2520
     aacacagtgg agttttcgta tatcagatcc aacacagcgt cgcggatcga ccgaatacta      2580
     atcactagta aaatgaaagt ccaactgcgt acggcgcatt ttgcagtaac tgcattctcc      2640
     gatcacaaag catacgttgt gcggattgtt ctaccacatc taggaactcc ctgtggacgt      2700
     ggggtatggc gtctccaacc acatgtcctg aatgacacgg aagtcatcaa cgagctatca      2760
     agaaagtgga tatattgggt gcgagcgaga cgaaattacc tttcgtggat agaatggtgg      2820
     gtccagtttg cgaaacccaa ggttatctcc tttttaaagt ggaaaacctc gattgtctat      2880
     cgagatttta aagatgcaat tgagctttat cgatctttgt taaaagaagc atacgataac      2940
     tatcacggcc atccagaaca acttgtaacg atcaatcgta tcaaggcaca aatgttgcga      3000
     ctacagagaa atttttcttc aaactttcgg gccaataacg aaacctacat ttctggagag      3060
     tcgactactt tattccacgt tgcacaaatt catgggaaaa ggtccaaaac tgccatctca      3120
     agtttgcaga cagaaaatgg caccgaaacc tgcgatcatt cccaaatcaa ggagacaatc      3180
     aggtcctatt ttgagaacct gtactcttca gaagaagccg taccttcgat ggatttcatg      3240
     ccaatcagag cgatccctga aaataaccaa gcaaacgaaa acctgatgca aataataaca      3300
     caagatgatg ttttaactgc aatcaaggga agtagctctc gtaaatctcc tggctccgat      3360
     gggctaccca aggatttttt tctgaaaaca tggcagatta ttggctttga attcacaaat      3420
     gtcattaatg atgcacttca aggtaaggca acgaggcagt tctatgacgg aatccttgtt      3480
     cttgtgaaga agaaaggaag cgataaaagc gttaaaggat atcgaccaat atcacttttg      3540
     aattatgact acaaagtttt agcaagaatt ttgaagcaaa gaatacattg tctcctaccg      3600
     ttagttctgt caaacaacca aaaatgctca aatggaaaaa gaacgatttt tgaagcaacg      3660
     aaccgcatct acgacaaaat ttgtcaacta aaacatcttc gacaaaatgc attgctggtg      3720
     tcttttgatc tggatcatgc gtttgatcga gtaagccatc aatttctaca gcaaaccatg      3780
     attaggatga atttcaacgc caatttcgtc gagttgcttg ccacgatatg gaaccaatcg      3840
     tactccaaga ttctgatcga cggccacttg actccggagc tcaaaatcaa ccgatccgtc      3900
     cgacaaggtg acccactgtc aatgtatctg tttgtgctgt atctacagcc gttgttagac      3960
     gccatttcaa gaagtttccc taatgctgta atgaacgcct atgcagacga catttccatg      4020
     ttcctagaaa acgaacgttc tctgatgaaa gtggtcgctc tcttcaatga ttttggacta      4080
     acctcgggtg cagttttgaa taaacggaaa actctagcag taatgattgg caacgttgat      4140
     cttacgactg attcagaatg gcttcacatc gaaaactacg ttaacatttt aggagtcaaa      4200
     tacggagata acatcaagca agcacagaag ctgaactggc agtccgtttt gaacggattg      4260
     cgaacccagc tttggctgca tcatcccagg aaattaaatc tgtgtcagaa aatcattctg      4320
     atcaatacgt acatcacctc aaaactttgg tatatggcct ctaatatacc tctcacgaaa      4380
     ggatttgcaa caaaaattcg ggcagagctt gggaaattca tttggcacgg ccaaacattg      4440
     caaagaatag cttttgctaa tctaacgtta cctaaaacaa gaggtggtct aaatctacaa      4500
     tgtcctgaaa caaagtcgaa agctctgctt ttgaatcgat tgatgaatcc agctgatgaa      4560
     cttccgttcc tgaacagtct tctacaaaat tctagcagtt ccattccagc gttgttcaat      4620
     catgcatcct tactacaagc agaactagcg ctcctaccgg aacgtttaat caacacacct      4680
     tcatccagag aaatttatca tcactatcta gaattgaaac ctgaccctgg atttgtgtca      4740
     gctgatcaac gaaactggaa aatgatcttc aagaatcttc acaataaaca tttatcatct      4800
     gcgcaacgct caaactggtt cgtggtaatg cacagaaaaa taagacatcg agagctactg      4860
     tatcaacggg gtgtagtgga ggatccttac tgcgaaacat gtccaggaga actagagacc      4920
     actatacata agctgttccg ttgtcaacgt gtcaggaata tctggagata tcaacgaaga      4980
     cagataacta atcacgtacc tgaactaggt agactagaac ccgaagattt cgtttatcca      5040
     agccttagaa atatgaatca aaccactaag aattatatta taaaaatatt agggctttac      5100
     ttcagttatt tagttgaatc tcctgagaac tcaatagatt tagatgattt tgtattttat      5160
     ttaaacatta acaactaagc tgcaaatata aggttttaca aaaaaaaaa                  5209
//
ID   L1-32_AAe   repbase;    DNA;    INV; 4525 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-32_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4525
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1385-1385 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1278
FT                 /product="L1-32_AAe_1p"
FT                 /translation="MSVRRENTFRIDYANVPRKPSFEELHDFVATTLGLQY
FT                 EQVVQLQPSRALGCAFVKVVDLELARRIVAEHDNKHETEVDGKIYKLRITL
FT                 EDGAVEVKLTDLSEDITNEQVAEFLSAYGEVLTITNQVWDSKYRFAGLPTG
FT                 ARIARMMVKRNIKSYVTIDGQTTNVTYFGQLQTCKYCSEFVHNGISCVQNK
FT                 KLLVQKTYANVAKEPAEKNTAPRXSVSKPKPTFAKLFGPKPGEAAQQKVSQ
FT                 KTKRAGTSENAFAVPKPTKPNLAEPSTKKAGASETVFAAPLSSKANPDKPL
FT                 ATAHALSKPNPLDQTTALVTPPVLSQNLLTTTRMVTRQAASDGNETDISTA
FT                 STNSKRRHGRPPGKKLRHDDDTNEESDNLI"
FT   CDS           1281..4454
FT                 /product="L1-32_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAFMSYNLASINITTITNTTKLNALRTFLRTMDIDIA
FT                 FLQEVENDQLHLPGYSVVCNVDHARRGTAIALKEHIRFTHVEKSLDGRLIA
FT                 LRVQNTTFCNVYAPSGTALRAERERFFTNTLAYYLRHHTEHTLIAGDFNCV
FT                 LRQCDATGHNPSPALLTAVQQLQLIDVWQKICPNTPGHTYITHNSSSRLDR
FT                 MYVSQSLGSHLRTAVTHVCSFSDHKALTVRICLPNLGHEPGRGFWSLRPHL
FT                 LTPENIEEFQYRWQFWTRQRRNFPSWMQWWLSFAKPKIKSFFRWKSKAAFD
FT                 DFHREYQRLYVELRSAYDGYYRNPAMLSTINRVKAQMLTLQRNFSQDFMRI
FT                 SERYISGEPISMFQIGERRRRKTTIAHLRDEQNQPIDDAHAIEQHMFDFYR
FT                 TLYAAEQTDVVADELFLCERVVPDNDPANVACMGEITPADIIMAIKSSSPN
FT                 KSPGGDSLPREFYLKTFNVIWRELTLVMNEALAGNFPAEFVDGIVVLVKKK
FT                 GNDETAHSYRPISLLNCDYKILSRILKQRLEIVMRNHRVLSAGQKCSSFGR
FT                 NIFQATLALKDRMAQLIKRKQRGLLASFDLRHAFDLVDRSFLFRNMCALGF
FT                 NPNFVRLLSKIGELSSSRLLLNGRLSGAFPIERSVRQGDPLSMHLFVLYLE
FT                 PLIKRLEETCGPDLVVAYADDVSVIVTCEARLERIRELFHRFGRVSGARLS
FT                 LAKSTSVSVGYTDDAPLKVPWMRCENTVRILGVTFANSIRLMNKLNWDALV
FT                 GNFARQXYLHSQRALTLQQKVTLLNVFITSKIWYLASLLTPAAVHTAKLTA
FT                 AMGSFLWRGIPARVPMLQLSRNVEGGGLKLQLPTLKCKALLINRHIREIDS
FT                 TPFYSSFISHAIPNPPADCPCLKQILSNFPLLPPQIQQNVSVGAIHNFYIS
FT                 QTDEPKVSRDYPAASWPQIWRNIASKQLSSGNRSLLFLLVNGKLNHRKLMH
FT                 RTNRADGENCLHCTEPCETLEHKLGTCVRVEAAWRLLQRKISTLLNGWRRL
FT                 SIEDLLKPSLRNVARWKKTKILKMFASYVVFIMDNNNVIDVDSLEFEIDNA
FT                 V"
XX
SQ   Sequence 4525 BP; 1261 A; 1120 C; 1027 G; 1115 T; 2 other;
     tcagttagcg ctcaacttcc aagcagagca gttgtgtttc tcgctggaag ccacacgcaa        60
     gctattgcga cttaggtcga tttttttttc tttctttgag gtgttatagt acacgtgcag       120
     tttcgcgttt gcgagtgtag tgtcgcggat atcgccgcga tgagtgttcg acgcgaaaac       180
     acgtttcgca tcgattatgc gaacgtgcca aggaagccgt cattcgaaga gctacatgat       240
     tttgtagcca ccacattggg actccaatac gaacaagttg ttcaactcca gcctagcaga       300
     gcactcgggt gtgccttcgt gaaggtcgtc gacctggagc tagcgcggag aatcgtagca       360
     gagcacgaca acaaacatga gacggaggta gatggcaaaa tctacaagct tcgtattacg       420
     ctcgaggatg gtgcggtgga agtaaagctg accgatctgt ccgaggacat cacgaacgag       480
     caggtggctg agttcctcag tgcctacggc gaagttctca ccattaccaa tcaagtatgg       540
     gacagcaagt atcgcttcgc tggtctacca accggcgctc ggatagcaag aatgatggtg       600
     aaacggaaca ttaaaagtta cgtcacaatc gatggtcaaa ccacgaacgt gacttatttc       660
     ggacagttac agacctgtaa gtactgctcc gaattcgtgc acaacggtat ttcttgtgtg       720
     caaaacaaga agttactggt tcaaaaaacc tacgccaatg tagcgaaaga acctgcggaa       780
     aaaaacaccg caccaagatt kagcgtctca aaaccgaaac ctacatttgc gaagctcttc       840
     ggaccgaagc ctggggaggc tgcccagcaa aaagtatctc aaaagacgaa aagggctggt       900
     acgtcggaga atgctttcgc tgtgccgaag cctaccaagc cgaaccttgc tgaaccatcg       960
     accaaaaaag cgggagcatc cgaaactgtg tttgctgctc cgctttcttc taaggcgaac      1020
     cccgacaaac cactggctac tgcccatgcg ttgtccaaac cgaacccgct cgaccagacc      1080
     actgctctcg taactcctcc ggttctctca cagaaccttc taacgacaac tcgtatggta      1140
     acacgtcagg ccgccagcga tggtaacgaa actgatattt caacagcttc gacgaacagc      1200
     aaacgccggc atgggcgacc accgggcaag aagctgcgac acgatgacga cacgaacgag      1260
     gagagcgata atttgatcta atggcgttca tgagttacaa tttagcatca atcaacatca      1320
     ccacaatcac aaatacgacc aaattaaacg cactccgaac ctttctccga acaatggaca      1380
     tcgatattgc ctttctccaa gaagttgaaa atgatcagct acacttgcct ggctatagcg      1440
     ttgtatgtaa tgtggatcat gcaagaagag gaacggcaat agcgctcaaa gagcacattc      1500
     gtttcaccca cgtcgaaaag agcttagatg gacgtttgat tgcccttcgg gtgcaaaaca      1560
     caacattttg taatgtatac gctccgtctg gaactgctct acgggctgag cgggagcggt      1620
     tcttcacaaa cactctagct tactatctcc gccaccacac agaacatacg ttgattgcgg      1680
     gtgactttaa ctgtgttctg cggcagtgtg atgcgacggg acacaatccc agccccgctc      1740
     ttctaacagc tgtacagcag ttacagttga ttgacgtgtg gcaaaaaatt tgcccaaaca      1800
     cacctggaca cacatacatc actcacaatt cgtcttctcg gctagaccgc atgtatgtta      1860
     gccagagctt aggtagtcat ctgcgaacag cggtcactca tgtctgctcc ttttccgacc      1920
     acaaggcatt aactgtgcgt atatgcctac ccaatcttgg tcatgagcct ggtcgtgggt      1980
     tttggtccct ccgaccgcat ctcctcacac cggagaatat tgaagaattc caataccgct      2040
     ggcaattttg gacgcgccaa cggcgtaatt ttccttcttg gatgcagtgg tggttatcat      2100
     tcgctaagcc caagataaaa tccttctttc gttggaaatc taaggccgcc ttcgatgatt      2160
     tccatcgcga ataccaacga ctgtacgtgg aacttcgatc agcatacgat ggctactatc      2220
     ggaatccggc gatgttatca acgataaatc gagtcaaagc gcaaatgtta accttgcaac      2280
     gaaatttctc ccaagatttc atgcgaatta gcgagcgata tatttccggt gaaccgattt      2340
     caatgttcca gatcggcgaa cgaagaagga ggaaaacaac catcgcccac ttgcgagatg      2400
     aacaaaatca gcccattgat gacgcgcatg cgatcgagca acacatgttc gatttctacc      2460
     gtacgctcta tgctgctgaa caaactgacg tggttgcaga cgaactattc ctatgcgaga      2520
     gagttgtccc agataacgat ccggcaaacg tggcctgcat gggagaaata acaccagccg      2580
     atatcatcat ggccatcaaa tccagcagcc cgaacaaatc ccccggaggt gattcgctcc      2640
     cacgtgagtt ctaccttaaa acattcaacg tcatctggag agagttaacg ttggtcatga      2700
     atgaagctct tgctggaaat tttccagctg aattcgtcga tggaatcgta gtactggtga      2760
     agaaaaaagg gaacgatgaa acggcccact cgtacagacc gatatcctta ctcaactgcg      2820
     actataagat attgtctcgc atactcaaac agcgcctgga aatagtaatg agaaaccatc      2880
     gtgtgctcag cgcaggccaa aagtgctcca gcttcggacg aaacatcttc caggccacgc      2940
     tggccttgaa agaccgcatg gcacagctta tcaaacgtaa acaacggggt ctactagcat      3000
     cgtttgatct gcgacatgcg ttcgatcttg ttgatcgctc tttcctcttt cgcaacatgt      3060
     gcgcactcgg ctttaacccg aactttgttc gtcttctcag caaaatcgga gagctatcat      3120
     cttctcgcct gctcttaaat ggacgtctgt cgggagcatt tcccatcgag agatcagtgc      3180
     gtcagggaga tccgctctcg atgcacttgt tcgtgctcta cctggaacca ctcatcaaga      3240
     ggcttgagga aacctgcggg cccgacttgg tggtggcata cgctgacgat gtgtcggtga      3300
     tagttacatg cgaggccaga ttggagcgaa ttcgagagct atttcatcgt tttggacgag      3360
     tgtcgggtgc taggctaagt ctagcaaagt caacgtctgt atcagtgggt tacactgacg      3420
     atgcgccact caaagtgcct tggatgcgtt gtgagaacac cgttcgaatt ctaggagtca      3480
     cctttgccaa ctccattcgg cttatgaaca agttgaattg ggatgcgctc gttggcaatt      3540
     ttgctcgtca amtatatctg cactcacaac gggcgctcac gctacaacag aaagtgactc      3600
     tactaaatgt gtttatcaca tcgaaaatat ggtacctcgc atcgttgctc acgccggctg      3660
     ctgtgcacac agcaaaactg actgctgcga tggggtcttt tctgtggcgt ggtattccag      3720
     ccagggtacc aatgctgcaa ttgtcccgca atgtagaagg aggtggattg aaattgcaac      3780
     tgccaactct aaaatgcaag gctttgctga tcaaccgaca tatccgtgaa atcgactcca      3840
     ctccttttta tagttccttt atttcccatg caattcccaa ccctcccgca gattgtcctt      3900
     gtctaaagca aatcctatcc aattttcctt tacttcctcc tcaaattcag caaaacgttt      3960
     cagtcggcgc catccacaac ttctatatca gccaaaccga tgaaccgaaa gtttcacgtg      4020
     actatcctgc agccagctgg ccgcaaatct ggcgaaatat tgcatccaag cagttgtcct      4080
     cggggaatcg aagtttgctg ttccttctcg taaacgggaa gcttaatcat cgaaaactca      4140
     tgcatcgaac caacagagcc gacggtgaaa actgcttaca ttgtaccgag ccgtgcgaaa      4200
     cattagagca taaattgggt acgtgcgttc gtgtagaggc agcttggaga ctactacagc      4260
     ggaagatatc tactttgctc aatggatggc gtagactttc tatagaggat ttgttgaaac      4320
     cttccctaag aaatgtagca agatggaaga aaactaaaat acttaaaatg tttgcaagtt      4380
     acgtcgtctt tattatggac aataataatg taatagatgt agattcacta gaatttgaaa      4440
     tcgataatgc agtataagaa attattttgt aattactttt tactctttga tcaataaaca      4500
     aattttatgt aaaaaaaaaa aaaaa                                            4525
//
ID   L1-33_AAe   repbase;    DNA;    INV; 4410 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-33_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4410
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1386-1386 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           146..1156
FT                 /product="L1-33_AAe_1p"
FT                 /translation="MSIRRENTFRIDYANVPKKPSFEELHDFIGSVLGLQY
FT                 EQVVRLQPSRALGCAFVKVVNLELAQKIVAEHDDKHETEVDGKVYKLRITL
FT                 EDGSVEVKLTDLSEDISNEQISEYLSSYGEVLSVTEQLWDSKYRFAGLPTG
FT                 TRIVRMVVKRNIESYITIDGQTTNVVYFGQLHTCRYCSEFVHNGISCVQNK
FT                 KLLVQKTYANVAKQTDVSPSATKPVATKNKMPFSKLFGAKSREATSSRKVN
FT                 SNDSLSAVAKPSIPDPVDRATKPNPTEQSNSLMPPPAVSQGNQSTCRKSPR
FT                 QASDGNDTDNSTTSNNGKRRSARVPGKKLRQNYDDDTNEEIDVQI"
FT   CDS           1159..4329
FT                 /product="L1-33_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAFHSYNLVSININTITNPTKINALQTFLRNSEIDIA
FT                 FLQEVENEQLLLPGYNIVCNVDHTRRGTAVALKEHIQYTNVEKSLDGRIIA
FT                 LRVQNTTLCNVYAPSGTALRNERERFYENTLAYYLRHQTEHTVIAGDFNCV
FT                 LRQCDATGHNTSPALLRTVQQLQLLDIWEKVCPNMPGHTYVSHNSSSRLDR
FT                 IYVSQSLRTHLRSACLHVCSFSDHKALTARICLPYLGREAGRGFWSLRPHL
FT                 LSPEHLNEFRMRWQYWTRQRRNFPSWIQWWVSYAKPKIKSFFRWKSKTVFD
FT                 GFHWAHQRLYVELRQAYDGYYMNPGMLSTINRVKSQMLTLQRNFTKTFMRL
FT                 NESYVAGEPISTFQLGEKRRKRTVITQLRDDNNVPIEGSEAIERHMLNFYR
FT                 DLYAAGATEDTTANEFVCERVIPENDQMNECCMSEITVADVFTAIKSSSPN
FT                 KSPGGDSIPREFYLRAFDIIWREITLIMNDALAGNFPANFVDGVIVLVKKK
FT                 GNDQTAHSYRPISLLNCDYKIFSRVLKYRLENIMRTNHIISDSQKCSNFGR
FT                 NIFQATLALKDRIARLKKTKQRGLLASFDLRHAFDLVDRVFLARNMCSIGF
FT                 NPNLVRLLVRIGELSTSRLLVNGYLSESFPIERSVRQGDPLSMHLFVLYLH
FT                 PLIKRLEEVGGPDLVVAYADDVSVISTCSERLERMRETFRRFERVSGSRLS
FT                 LTKSSSISVGYTDVMPLTVPWLRTENTIRILGVTFANSVRLMNKLNWDEQV
FT                 SKFARLVYLHSARTLTLHQKVTLLNTFITSKIWYLASTLAPSAVHTAKLTS
FT                 TMGSFLWRGIPARVPMQQLARSKEAGGLKLHLPTLKCKALLLNRHMRDIDS
FT                 LPFYKSFLTQNNPDLPADCPCLKLILSNFPILPPRVQENPSADSIHNVYIE
FT                 QTEEPKISREHPTNNWRQIWGNISMRQLASSQRSSLFLLVNAKLDHRKLMY
FT                 RINRTDGDNCLHCNRATETLEHKLSECVRVAPAWRLLQQKISSLFNGWRLL
FT                 TIGELLRPQLNGIRRWKKVKILQMFIQYVLFILQCNNAIDLGSLEFEIQLV
FT                 "
XX
SQ   Sequence 4410 BP; 1276 A; 1086 C; 952 G; 1096 T; 0 other;
     attagttagc gctcaacttc catgcagagc agtcgtgttt ctcgctggaa gccccacgca        60
     agctattgtt acattttttt cgatctttta catcttaatt tcgcgttctg tgctcgctgt       120
     gaatagtgtc gcggatctcg ccgcgatgag tattcgacgc gaaaacacgt ttcgcatcga       180
     ttatgcgaac gtgccgaaga agccgtcttt tgaggagctt cacgacttca ttggctctgt       240
     gttaggcctt caatacgaac aagtcgttcg tcttcaaccg agtagggcac tcgggtgcgc       300
     cttcgtgaag gttgttaacc tcgagctcgc gcagaaaatt gtagccgagc acgatgacaa       360
     gcatgaaacc gaagtagacg gcaaggtcta caaactacgg atcacgcttg aagatggatc       420
     cgtggaggtg aaactaaccg atctctccga agatatctcg aatgagcaga tatccgagta       480
     tctcagcagt tacggtgaag ttctctctgt caccgaacaa ttatgggaca gcaaatatcg       540
     ctttgctggg ctcccgaccg gtacacgtat cgtgcgcatg gtggtgaaac gcaatattga       600
     aagctacatc accatagatg gccaaactac gaacgtagtt tatttcgggc agctacatac       660
     atgtcgttac tgtagcgagt ttgtgcataa cggcatctct tgcgtacaga acaagaagct       720
     gctcgttcaa aagacgtatg ccaatgttgc gaaacaaacc gacgtctccc ccagtgccac       780
     aaaacccgtg gcgacaaaaa acaaaatgcc gttttccaag ctgtttggag cgaaatccag       840
     ggaagctaca tcgagtagaa aagtaaactc aaacgattcg ttgtctgctg tggcaaagcc       900
     atcgattccg gaccccgtcg acagagcaac aaaaccgaac cctaccgaac aaagtaacag       960
     cctcatgcct ccgccagctg tatcgcaagg caatcaatca acatgccgaa aatctccacg      1020
     ccaagcaagc gatggaaatg acaccgacaa ctccacgact tcaaacaacg gcaaacgtcg      1080
     aagtgctcgt gttccaggga aaaagctgcg acagaactac gatgacgata cgaacgaaga      1140
     gatagatgtc cagatctaat ggctttccac agctataatc tcgtatcgat caacatcaac      1200
     accatcacaa acccgaccaa aatcaatgcc ctacaaacct tccttcgaaa ctcggagatc      1260
     gacatcgctt ttctgcaaga agtggagaac gagcagctcc tcttgcctgg gtacaatatc      1320
     gtatgtaacg tagaccatac taggagggga acagcagtag cactgaagga gcacatccaa      1380
     tacactaacg ttgaaaagag tctggatgga cgcataatcg cgttaagggt gcaaaacact      1440
     acactctgca atgtatatgc gccgtcgggt actgctcttc gaaatgagag agagcgtttc      1500
     tacgaaaaca cactcgctta ctatctccgt caccaaacag agcacacggt aatagctggc      1560
     gacttcaact gtgtcttgcg acaatgtgat gcgacaggtc acaacaccag ccccgctctc      1620
     ctcagaaccg tgcagcaact gcaacttctc gacatttggg aaaaagtgtg cccaaacatg      1680
     cccggacaca cgtacgtctc gcataactcg tcatcccgtc ttgacagaat ctacgttagt      1740
     cagagcctac gaacccatct aaggtcagca tgtttacatg tttgctcatt ctcagaccac      1800
     aaggctttga cagcacgaat ttgtctcccg taccttggca gagaagctgg tcgtggtttt      1860
     tggtctctac gtccacatct gctatcacca gaacacctca atgaatttcg catgcgctgg      1920
     caatactgga ctcgccagcg tagaaacttc ccttcctgga tccaatggtg ggtttcgtat      1980
     gcgaaaccga aaattaaatc atttttccgt tggaaatcga aaacagtttt cgatggattt      2040
     cattgggcac accaacggct ttacgttgaa ctgcgacaag catacgacgg ctactatatg      2100
     aacccaggaa tgctgtcaac aatcaaccgt gtgaagtcgc aaatgttgac actgcagcgt      2160
     aatttcacta aaacattcat gcggttgaac gaatcgtatg ttgctggtga acccatatcg      2220
     acgtttcagc taggcgaaaa gcgcaggaaa agaactgtaa taacgcagct tcgagacgat      2280
     aacaacgttc ccattgaagg atctgaggct atcgaaaggc atatgcttaa cttctaccgt      2340
     gatctgtacg ctgctggtgc aaccgaagat acaacagcga acgaatttgt gtgcgagaga      2400
     gtgatcccgg aaaatgatca aatgaacgag tgctgcatga gtgagataac ggttgccgac      2460
     gtttttacag caatcaaatc aagcagcccg aacaaatccc ctggtgggga ctcaattccg      2520
     cgagaattct atctgagagc gtttgacatc atttggagag aaattactct tatcatgaat      2580
     gatgccctgg ctggaaactt cccagctaat tttgttgacg gagtgatagt tctcgtgaaa      2640
     aagaagggta atgaccaaac tgctcactct tatagaccga tatcactcct taactgcgat      2700
     tataaaatct tctcacgtgt cctgaaatat cgcctcgaga acattatgcg taccaaccat      2760
     ataatcagcg atagccaaaa atgctcaaat tttggccgca atatctttca ggcaaccctt      2820
     gctctaaagg atcgcattgc gagactgaaa aaaactaaac aacgtggcct cttagcatct      2880
     ttcgatcttc ggcatgcctt cgatctggta gaccgtgtat ttcttgctcg gaacatgtgc      2940
     tcgatcggtt ttaacccgaa tcttgttcgt ctgctggtca gaataggaga actctcgacg      3000
     tcgcgactac tggtgaacgg atacttgtcg gaatcattcc caatagagag atcggttcgg      3060
     cagggagacc cactctcaat gcatctattc gttctctatc ttcaccctct catcaagcga      3120
     ctcgaagaag ttgggggacc tgatctcgta gtagcatatg ccgatgatgt gtcagttatc      3180
     tccacctgca gcgaaaggct ggagcggatg agagaaacgt tccgtcgctt tgaacgtgta      3240
     tctgggtcca ggctgagttt gacgaaatcc tcgtcgatat cggtgggtta caccgatgtt      3300
     atgcctctca ccgtaccgtg gctgcggacc gaaaacacca ttcggatttt gggagttact      3360
     tttgccaact cagttcgtct gatgaacaag ctgaactggg acgagcaagt cagtaaattt      3420
     gctcggcttg tttatctcca ctcagcacga acactcaccc tgcaccaaaa agtaacccta      3480
     ctcaacacct tcatcacatc gaagatatgg tatttggctt ctacgcttgc tccgagtgcc      3540
     gttcacacgg caaagctgac gtcaacgatg ggatctttcc tatggcgggg tataccagcg      3600
     agagttccga tgcaacaact tgcgcgcagc aaagaagctg gtggtttaaa actgcacctc      3660
     cctaccctca aatgtaaggc gcttctcctg aaccggcata tgcgcgatat cgattccctt      3720
     cctttctaca aatccttcct tacccaaaac aatcccgatc taccagcaga ctgtccttgc      3780
     ctaaaactta tcctttcgaa ctttcccata ctccctccta gagtccaaga aaacccctcc      3840
     gccgatagca ttcacaacgt ttacatcgaa caaactgagg agcccaaaat ttcgcgcgag      3900
     catccaacta ataactggcg gcaaatttgg ggtaacatct ctatgcgcca actagcttca      3960
     agtcagcgta gttcactgtt tctgttagta aacgctaaac tcgatcatcg taaactgatg      4020
     taccgtatta acagaaccga tggagataat tgtctgcatt gcaatagagc aaccgaaaca      4080
     ttggagcata aactcagtga atgtgtgcgc gtcgcaccag cttggcgctt gcttcaacag      4140
     aaaatttctt ctctgtttaa tggatggcgt ttattgacta taggagaact cctgcgaccg      4200
     caactaaatg gtattagaag atggaagaaa gtgaaaattt tgcaaatgtt cattcaatat      4260
     gtcttattta tattgcaatg taataacgct atagatttag gctctctaga atttgaaatt      4320
     caactcgtat aaataattat tatgtaatta attttttacg ctgaatacaa ataaaaaaaa      4380
     ttttatgtta aaaaaaaaaa aaatcaaaaa                                       4410
//
ID   L1-34_AAe   repbase;    DNA;    INV; 4426 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-34_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4426
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1387-1387 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           142..1179
FT                 /product="L1-34_AAe_1p"
FT                 /translation="MSVRRENTFRIDYANVPKKPTFEELHDFVGSTLGLQY
FT                 EQVVRLQPSRALGCAFVKVVDLELAQKIVADHDNKHETEVDGKIYKLRITL
FT                 EDGTVEVKLTDLSEDVSNERIAEFLSAYGEVLSVTDQVWDSKFRFAGLPTG
FT                 TRVARMLLKRNIESYVTIDGQVTNVVFFGQLQTCKYCSEFVHNGISCVQNK
FT                 KLLVQKTYANVAKQTVTNPSAAKPTATKQKTPFSKLFRSKSKETKQQSQNQ
FT                 PTKMTAAESAVAAPKQTMPITSDQTTSSSPLTKTNVAEKSGSLMAPPAAPQ
FT                 SVQTASRMTTRQASDGNETDISSASTSSKRRCGRPPGKKLRHNHDDDVNAE
FT                 LDD"
FT   CDS           1163..4357
FT                 /product="L1-34_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRSWTINPMAFNSYNIASININTITNPTKINALCSFL
FT                 RSSEIDIAFLQEVENEQLQIPGFNVVCNVDHNRRGTAIAMKDYIQFSNVEK
FT                 SIDGRIIALRIQNTTLCNVYAPSGTALRAERERFYSNTLAFYLRHNTDNTL
FT                 LAGDFNCVLRQRDATGHNHSPALLATIQQLQLVDVWEKLCPNMPGYTYMTH
FT                 NSSSRLDRVYVSQSLRSHLRTIDIHVCSFSDHKAITARICLPYLGREPGRG
FT                 FWSLRPHLLTTENIQEFHCRWQYWTRQRRNYNSWMQWWLSYAKPKTTSFFR
FT                 WKSKAAFNDFQREYQRLYTQLRQAYDGYFQNPAMLSTINRVKAQMLTHQRN
FT                 FTQTFMRVNESYVAGEPISSFQLGDRRRKRTTITQLRDDNDHLINTPEAIE
FT                 RHMFVFYRSLYAAGQTDRQVADTFECERVIPENDPSNEHCMSEITPADVFS
FT                 AIKSSSPNKSPGGDSLPREFYLKTFDIIWREITLVMNDALAGNFPADFVNG
FT                 VIVLVKKKGNDQTAHAYRPISLLNCDYKIFSRILKQRLENVMRAHQVISDG
FT                 QKCSNFGRNIFQATLALKDRIAQLKKRKQRGLLASFDLRHAFDLVDREFLS
FT                 RNMRSLGFHSDLVRLLNKIGELSTSRLLVNGRLSEAFPIERSVRQGDPLSM
FT                 HLFVLYLHPLIKRLEQIGGPDLVVAYADDVSVISTCRARLERMRETFRCFE
FT                 RVSGARLSLEKSSSISVGYTDDMPLTVPWLRNENTVRILGITFANSVRLMS
FT                 KLNWDELVGKFARLVYLHAQRTLTLHQKVTLLNTFITSKLWYLASVLSASA
FT                 AQTAKLTATIGTFLWRGITARVPIQQLARIKKEGGMNLHLPALKFKALILN
FT                 RHLQEIDSLPFYKSFFTQTNPQPPADCPCLKIILTEFPSLPPVLQDSPCAG
FT                 SIYSTYLERTDPPKISQKYPAANWPQIWQNISLRQLSSYQRSSLYLVVNAK
FT                 LEHRSLMFRMNRADSENCLHCGGARETIEHKLSGCVRVAAAWRMLQQKINS
FT                 VLNGWRRLTIEELLRPQLQGIEKLKKIRILKMFHEYIIFIMNCNNAIDVLS
FT                 LEFEIDCV"
XX
SQ   Sequence 4426 BP; 1258 A; 1096 C; 999 G; 1073 T; 0 other;
     cagttcgcgc tcaacttcca tgctgagcag tcgtgttctc tgctggaagc cacacgcaag        60
     ctattgttta ttttttttct ttcggattgt atccaaaatc tcgtttcgcg cttcgttttc       120
     gtcgcgagtt gtgctgccgc gatgagcgtt cgacgcgaaa acacgtttcg tatcgattac       180
     gcgaacgtgc caaagaagcc aacattcgaa gagcttcatg atttcgtcgg ttccacattg       240
     ggcctacaat acgaacaagt ggttcgtcta cagccaagta gggcacttgg atgcgccttt       300
     gtgaaggtcg tcgacctgga gctggcgcaa aaaatcgttg cagaccacga taacaagcac       360
     gaaacggagg tggatggaaa aatctacaag cttcggatta cgctcgagga cgggacggta       420
     gaggtaaagc taaccgacct atccgaggat gtatcgaacg agcgaatcgc tgagtttctc       480
     agcgcctacg gagaagttct ctctgtgacc gaccaagtat gggacagcaa atttcgcttc       540
     gctggtctcc caactggtac tcgtgttgcc cgaatgttgc taaagcgcaa catagagagc       600
     tacgtcacaa tcgatggcca agtcacgaac gtggtatttt ttgggcagct acaaacgtgc       660
     aaatattgca gcgaatttgt acacaacggg atctcctgtg tccaaaataa gaaacttctg       720
     gtacagaaga cttatgctaa tgtcgcaaag caaactgtga caaatcccag tgccgcaaag       780
     cccactgcta caaagcagaa gacaccgttt tcgaagctgt tcagatcgaa gtccaaagag       840
     accaagcaac aaagccaaaa tcaaccgacg aagatgactg ctgccgaatc tgcagttgct       900
     gctccgaagc aaactatgcc gatcactagc gatcaaacga cgagttcctc accgttgacg       960
     aaaacgaatg tagccgaaaa aagcggcagc ctcatggccc caccggccgc gccgcaaagc      1020
     gtgcaaacag caagccgtat gacaactcga caagcaagcg atgggaatga aaccgatatc      1080
     tcttcagcat caacaagcag caaacgccga tgtggccgcc cgcccggcaa gaagcttcga      1140
     cacaaccacg atgacgatgt gaatgcggag ttggacgatt aatccaatgg ccttcaacag      1200
     ctataacatt gcctctatca acataaatac tatcacgaat ccgaccaaaa ttaatgccct      1260
     ctgttctttc cttcgttcgt cggagatcga tatagcgttt ctgcaggagg tagagaacga      1320
     gcagcttcag atacccggct ttaacgttgt gtgcaatgtg gaccacaata ggagaggtac      1380
     ggcaatagct atgaaagact acatacagtt ctctaacgtc gaaaagagta tagatggccg      1440
     aataattgcc ctgagaatcc aaaacacaac actatgcaac gtatacgctc catctggtac      1500
     ggccctgcgt gccgagagag agcgttttta cagcaacacg ctcgctttct accttcgtca      1560
     caatacggat aacacattat tagctggtga tttcaactgt gtgttgcggc agcgtgatgc      1620
     gacgggccac aatcacagtc ccgctctcct tgcaaccata cagcaacttc agctggtcga      1680
     tgtgtgggaa aaactatgcc cgaacatgcc tggttatacg tatatgacgc acaactcctc      1740
     ttctcgccta gatcgtgtgt acgttagcca aagtctgcgt agccacctgc gaacaattga      1800
     tattcatgtt tgctcgttct ctgaccacaa ggccatcaca gcacgtatat gtctgcccta      1860
     ccttggccga gaaccgggtc gcggcttttg gtctctccga ccccatttgt tgacaacgga      1920
     aaacatccaa gagttccatt gccgctggca gtattggacc cgccagagaa gaaattacaa      1980
     ctcatggatg caatggtggc tgtcgtatgc caaaccaaaa acaacttcct tctttcggtg      2040
     gaaatcgaaa gccgctttca atgattttca gcgtgaatac cagcggctct acacgcagtt      2100
     acggcaagca tacgatggat attttcaaaa ccctgccatg ctgtcgacaa tcaatcgtgt      2160
     gaaggcgcaa atgttgacac atcagcgtaa ctttacccaa acgtttatgc gagtaaacga      2220
     atcatacgtt gccggagaac caatctcgtc gttccagcta ggcgataggc ggcgaaaaag      2280
     aacaacgatc acccagctgc gcgatgacaa cgaccatctg attaacactc ctgaagcgat      2340
     cgaaagacac atgtttgtgt tttaccgttc gctttacgct gctggtcaaa cagatcgaca      2400
     agtagcagac acattcgaat gcgagagggt aattcctgaa aatgatccct ctaacgaaca      2460
     ctgcatgagc gaaatcaccc cggcggacgt gttctccgcc ataaagtcca gcagcccgaa      2520
     taaatccccc ggcggggact ctcttcctcg tgagttctat ctgaaaacgt tcgatataat      2580
     ctggagggag atcactttgg tgatgaatga tgcgcttgcc ggaaactttc cggcagattt      2640
     tgtcaatggt gtgatagtgc tcgtaaagaa gaaggggaac gaccaaactg ctcacgcata      2700
     ccggccaatt tcactgctca actgtgatta taaaatattt tcacgtatct tgaagcagag      2760
     actggaaaat gtaatgcgtg ctcatcaagt gataagtgac ggtcaaaagt gctccaattt      2820
     cggtcgcaat atatttcaag caactcttgc tttaaaagac cgaattgcgc agttgaaaaa      2880
     acgaaaacaa cgtggtctac ttgcttcatt cgatctgcga catgcttttg atctggtgga      2940
     tcgtgagttc ctctcgcgga acatgcgctc actcggtttc cactcggatc tcgtgagact      3000
     gctcaacaaa attggagagt tgtctacatc gcgcctgttg gttaatgggc gactatctga      3060
     agctttccct atcgagagat cggttcggca aggggaccct ctctcgatgc atctgttcgt      3120
     gctttatctc catcctctaa tcaaacgact cgaacagata ggaggacctg atctagtggt      3180
     ggcatatgct gatgacgtgt cggtgatctc aacctgcaga gcaagactcg aacggatgcg      3240
     agagactttt cgttgcttcg agcgtgtctc tggtgcgagg ctgagtttag aaaaatcctc      3300
     gtcaatatcg gtggggtaca ctgatgacat gccgctcacc gtaccgtggc tacggaacga      3360
     aaacactgtg cgaatattag gaatcacgtt tgcgaattcc gtacgtctta tgagcaaact      3420
     aaattgggat gagcttgttg gtaaattcgc tcgtttagtg tacctccatg ctcagcgcac      3480
     actcactttg caccaaaaag taacgttgct caacacgttc atcacatcca aactgtggta      3540
     tctcgcttcc gtactctcag catcagctgc tcaaacggca aaactgactg caacgatcgg      3600
     aacgtttctg tggcgaggca taacagcaag agttccaata cagcagctag cacgtatcaa      3660
     gaaagaaggc ggaatgaact tacacttgcc tgcattgaaa ttcaaagccc tgattttgaa      3720
     ccggcatttg caagaaatcg actccctccc gttctacaaa tccttcttta cccaaaccaa      3780
     tcctcaacca cctgcagact gcccgtgtct caaaattatc ctgaccgaat tcccatcact      3840
     cccgcctgta ttacaagatt ccccctgcgc tggaagcatc tacagtacgt accttgagcg      3900
     aacagaccca ccgaaaattt cgcaaaaata tccggcagca aattggcctc aaatttggca      3960
     gaacatttcg ctgagacaac tttcatcgta tcaacgaagc tctctctacc tggtggtgaa      4020
     cgcaaaactt gagcaccgtt ctttgatgtt tcgtatgaac agagccgaca gcgaaaactg      4080
     tctgcattgc ggtggtgcac gtgagacgat agaacacaag ctaagtggat gcgtacgagt      4140
     cgccgcagct tggcggatgc tacaacaaaa aattaattct gttctcaatg gatggcgcag      4200
     actgacgata gaagagctct tgcgcccgca actgcaaggc atagaaaaac tgaagaaaat      4260
     tcgaattctc aaaatgtttc atgaatatat catctttatt atgaattgta ataatgcaat      4320
     tgatgtattg tcgctagagt ttgaaattga ttgtgtataa ataattatat tgtaattact      4380
     ttttacgcta cggtcaaata aactaaattt tacaaaaaaa aaaaaa                     4426
//
ID   L1-35_AAe   repbase;    DNA;    INV; 5102 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-35_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5102
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1388-1388 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1851..5036
FT                 /product="L1-35_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVKTKMDFLSYHLASVNINNITNQTKLDALSSFLRLN
FT                 DVDIAFLQEVENSSIQLTGYTLIFNIDSRKRGVAFALRPNIEYTSVERSLD
FT                 GRLITLRLKNGVTLCNIYAPTGSQGGSSREDFFNMTCAYYLRNCNGTIILG
FT                 GDFNSVVNQRDATGTTPRSNMTSRLMTSLNVIDVWRFLRPNDIDYTFLRAG
FT                 SCSRLDRFLLSRSSTDWLRTINHVVNCFSDHKAVIMRVVLPITGPPVGKGL
FT                 WRLNPHVLDDEETLSLLQLKWRSLVRQQTNYRSWSSWWLNLAKPKISSFLR
FT                 WRTSVQLQDNRNAMNLLYGELARTYQLYVNDSSQLSRINRIKSIMLLKQRE
FT                 STSNWRQMNETFLQGEPTALYHLSEKNYKRSRTLIRELEIENSNVVNDGNQ
FT                 IEQHVVSYFENLFQENNQTQTTNNFVPSLRIPNNNDHNGKLMDLIEADEIY
FT                 QCIKNSCSRKSPGEDGLPKEFYMKCWNIIHNEFTLVLNDFMQNPNVESKLM
FT                 NGIVVLVKKKGNSKTIKGYRPITLLNFDYKILTRILKRRMTPLMDLVLSKH
FT                 QKCSKPQSNIFQATGKILDNIASLKHSRQTSMLVSFDLDHAFDRVKHSFLF
FT                 QTMQRMNFNEQIITFLRRIMSNTCSRVLINGKVSRQIQISRSVRQGDPLSM
FT                 FLFVIYMQPLIDKIVDSGYAGDAFNVYADDISIFVPDYHTLQQVVRIIDDF
FT                 REVSGAVLNLQKTFALKIGNVPSPGPLQWLNFTNSLKVLGIYYSDKVKETM
FT                 DNTWTNVIKNLKWRLWMSKVRSLNLIQKVILLNTFISSKLWYTASTLPLPK
FT                 KFELQILKEYRNFLWIGGKNHIALETLFLPKIRGGLNLHSPGLKSTSLIVN
FT                 RILQNLYNLPFLRSWLNAENILHIPAAYPQVKVFALEVATLSQETIIQHSS
FT                 SSIYKELLQDIRDPAVFVRNRPWRVIFKNVLDHRIVSGNRSMWYTAVHGRI
FT                 ITNEMLFNQNRRTSPNCLRCPGITETAEHKFFECQLSKPVWMFALSKMVAI
FT                 RPLLRRKKPEYFLFPEMRGVPSREALEIKHIFAKYISFICNTPEANINVDN
FT                 FRFEL"
FT   CDS           join(143..1081,1036..1875)
FT                 /product="L1-35_AAe_1p"
FT                 /translation="MSGYRKNSFVIDFSVMPVRPKLNVVQDFIFSKMSLDM
FT                 SVVKNLQTSITKSQVIIEVDSVATADSIIAQHNSKHSLEHDQQLYPIPVHS
FT                 ADSAIEVKVYDLPPQMPNHLIASHFSIYGKVLSVRNDVWKEYFPGIPNGVR
FT                 ILRMEIQKPIPSYVPVSGEMAYVLHINQVKTCKHCTQKVHIGKSCSAARKE
FT                 TSNQSNPGQTLAEIVSNARNTEDENEATVDNMDSAESADESDVEEPSPKPE
FT                 TVLENESNKTNSKTTPASANASRATSSKPTVAVHDSEHDQLGGRKRPISPK
FT                 LPEQDNPRTLRRSKSQRQHSKSKNSTQIKVSASTLQVMFVFFFSMVSIYDS
FT                 VCPAEATNDTAVLRIISSLLEKVIPNAPHQPVPRNPFSRRNHTTSLEHRXS
FT                 PKGKSFSICLVEASLDTAILKKMSFSSVSSQPNMKIRSYLRYMIPALPLVP
FT                 SEVIPGAQYSSEGKKHSICLAGVSSGTAAPDKIFPTPTAKSVLLTTSKSII
FT                 NQCRQKMQETTLSTTLQYRMVQRSVIGNPNIYNGRIHKHEVSVSLNNHACM
FT                 ANTVKRGNQSRNQIHRTLERMSSVSTRQISGFDINASPWLKRKWIS"
XX
SQ   Sequence 5102 BP; 1602 A; 1107 C; 1007 G; 1384 T; 2 other;
     agttgacatt caggcttcat acacaacaga cgtgtatcgg atcgagtgaa aacatcccca        60
     ttgtttttct gctaatcgga cagggtccga aaggctttcc tagttagttt ttcgtggaag       120
     cgacaagatt attccctcca gaatgtctgg ataccgtaaa aactcgttcg tcatcgactt       180
     cagcgttatg ccagttcgac ccaagctgaa cgtagtccag gatttcatct tctcaaagat       240
     gtctcttgac atgagtgttg tcaaaaacct ccagacgagt atcaccaaat ctcaagtcat       300
     aattgaagtt gactctgtgg ctacagcaga cagcatcata gcccagcata actcgaaaca       360
     ttcgctcgag catgaccaac agctgtatcc aatcccggta cactctgctg atagcgccat       420
     tgaggttaag gtgtacgact tgccccccca aatgccgaac catctcatag catcgcactt       480
     ctcgatctat ggaaaagtcc tgtcagtgag gaacgatgtt tggaaggaat acttcccagg       540
     aattccaaat ggggtaagga tccttcgtat ggagattcag aagccaatac cttcctacgt       600
     tcctgtgtcc ggtgaaatgg cgtatgttct gcacataaat caagtgaaaa cctgtaagca       660
     ctgtacacaa aaggtacaca tcggtaagtc gtgctctgct gccaggaagg aaacttcaaa       720
     ccagagcaat ccgggtcaaa ctctcgctga aatcgtaagc aatgctcgta acacagaaga       780
     cgaaaatgaa gctaccgtcg ataatatgga ttcagctgaa tcagcggatg aatcggacgt       840
     agaggagccc tcaccaaaac ctgaaaccgt gctggagaac gaatcgaata aaaccaattc       900
     caaaacaacg ccagcatcag cgaatgcatc cagagccacc agttccaaac cgaccgttgc       960
     agtgcacgat tcggaacacg atcaattagg aggacgtaag cgaccgattt caccaaagct      1020
     tccagaacag gataatccaa gaactctacg cagatcaaag tctcagcgtc aacactccaa      1080
     gtgatgttcg tctttttttt ctcaatggta agcatatacg acagtgtatg tcctgccgaa      1140
     gcaacaaacg atactgccgt cctaagaatt atatcatctt tattagaaaa agtcatccca      1200
     aatgcaccac atcagccagt tccacgcaac ccgttcagtc gacgaaacca taccacwtcg      1260
     ttggagcacc gttwttctcc caaaggtaaa agcttcagta tatgtcttgt cgaagcgtct      1320
     ctcgatactg ccatcctgaa aaaaatgtcc ttttcatcag tgtcctccca gccaaatatg      1380
     aaaatacgat cctacctacg atatatgata ccagcattgc cgctcgtgcc ttctgaagtc      1440
     atccctggag cacagtattc ttctgaaggt aaaaagcata gtatatgcct tgccggagtg      1500
     tcgtcaggta ctgccgcccc tgataaaatc tttccaacac ccacagcaaa atcggttttg      1560
     ctaacgacgt ccaaatccat catcaaccag tgccgccaaa agatgcagga aacaacgtta      1620
     tcgacgactc ttcagtatcg aatggttcaa cggtctgtta ttggcaatcc caatatttat      1680
     aacggtagga tacacaaaca tgaggtgagc gtatcgttaa acaatcatgc ctgtatggca      1740
     aatactgtca agcgtggtaa ccagagtaga aatcagatac atagaacgtt agagagaatg      1800
     agctccgttt cgactaggca aatcagtggt ttcgatatta atgctagtcc atggttaaaa      1860
     cgaaaatgga tttcttaagt tatcatttag cgagtgttaa catcaacaac attactaatc      1920
     aaacaaagtt agatgctcta agttcctttc tacgtttgaa tgacgtagat atcgcatttc      1980
     tccaggaagt tgaaaattcc tccattcaac tcactggtta tacactcatc ttcaatatcg      2040
     attctcgcaa aaggggtgtt gcttttgcgc tcagaccaaa tattgagtat acctcagtag      2100
     aacgctctct ggatggtaga ctaatcactt tgcgactgaa gaatggtgtc actttgtgca      2160
     acatttatgc tcctactgga agtcaaggcg ggagtagtcg ggaagacttt ttcaacatga      2220
     catgtgctta ttatctgaga aattgcaacg gaactataat tttgggcggt gacttcaact      2280
     ctgttgtgaa tcaaagagat gctactggaa caactccacg gagtaatatg acatctaggc      2340
     ttatgacttc attgaatgtt atcgatgtgt ggcgattcct gcggccgaat gatattgatt      2400
     ataccttctt gcgtgctggt tcttgctcaa ggctcgacag attccttcta tccagatcat      2460
     ctactgattg gctgcgtaca attaaccatg tagttaattg tttcagtgat cacaaagcag      2520
     ttatcatgcg agtggtgcta ccaataacag gtcccccggt tggaaaaggt ctttggcgtt      2580
     tgaacccaca tgtgttggat gatgaggaga ctctatctct tcttcagctc aagtggcgct      2640
     cccttgtaag gcagcaaaca aattatcggt cttggtcatc ttggtggttg aatctagcaa      2700
     aacccaaaat ttcctccttt cttcgatggc ggacatccgt acaacttcag gataatcgta      2760
     atgcaatgaa tttattgtat ggtgaactag caagaacata tcagttgtat gtcaacgatt      2820
     cttcgcagtt atctcgaatc aatcgcatca aaagtatcat gctgttaaag caacgcgaat      2880
     ccaccagtaa ttggcggcaa atgaatgaaa catttttaca aggtgaacca actgcgcttt      2940
     atcatctgtc tgagaagaac tacaaacgat caagaacatt gatacgcgaa ttggagatag      3000
     agaacagtaa tgttgtcaat gatggaaatc aaattgaaca gcatgttgtc tcatactttg      3060
     aaaacctatt tcaagaaaat aatcaaacgc agacaaccaa caacttcgta ccttcgcttc      3120
     gtattccaaa taacaacgat cataatggaa aattgatgga cctcattgaa gccgacgaaa      3180
     tataccaatg tattaaaaac agctgctcac gcaaatcgcc aggggaagac ggactgccca      3240
     aagagttcta tatgaaatgt tggaacataa ttcacaatga atttactcta gttttgaacg      3300
     atttcatgca aaatccaaac gtcgaatcca agcttatgaa cgggatcgtt gttttggtga      3360
     aaaaaaaggg gaacagcaaa acgatcaaag ggtatcgtcc aataacactt ttgaactttg      3420
     attacaaaat cctcacaaga attctaaagc gtagaatgac accattgatg gatttggtcc      3480
     tgtcaaagca tcaaaaatgc tctaaaccac agagcaacat tttccaggct acagggaaaa      3540
     tattagacaa cattgcttcc cttaaacact caagacagac ctctatgctg gtatctttcg      3600
     accttgacca tgcttttgat agggttaagc acagtttcct gtttcaaacc atgcagcgta      3660
     tgaatttcaa tgagcaaatc ataacatttc ttcgtcgtat catgtccaat acctgctcaa      3720
     gggtacttat aaacggaaag gtgtcacgtc aaattcagat cagtcgttcg gtgagacaag      3780
     gagaccctct gagtatgttc ctgttcgtta tatacatgca gcccttgatt gataagatcg      3840
     ttgattctgg atatgccgga gatgctttca atgtgtatgc agatgacata agtatctttg      3900
     tgcctgacta tcatacgcta caacaagttg tgcgcatcat tgatgatttt cgagaagtct      3960
     caggagcagt tttaaatctg caaaaaacgt tcgcattgaa aatagggaac gtaccatcac      4020
     caggccctct ccagtggctg aatttcacaa attcccttaa agttcttgga atatattatt      4080
     ccgacaaggt caaagagact atggacaata cttggacaaa tgtaattaaa aatttgaaat      4140
     ggcggttatg gatgagcaaa gtccggtcac tcaacctgat tcaaaaagtt attctgttga      4200
     acaccttcat atcatcgaaa ttgtggtaca ctgcttcaac gcttccgctg ccaaaaaaat      4260
     tcgaacttca aattctaaaa gagtatcgga acttcctttg gatcggtggg aaaaatcata      4320
     ttgccttaga aactctattt ctgccaaaga ttcgtggtgg attgaatctt cacagcccag      4380
     gattaaaatc gacgtctttg atagtaaaca ggattcttca aaacttgtac aaccttcctt      4440
     ttctacgaag ctggctgaat gcggaaaata tcctgcatat tccggctgct tatccacaag      4500
     ttaaggtttt tgctttggaa gtggccacac tttcacaaga aaccattata cagcacagtt      4560
     catcatctat ctacaaagaa ctacttcagg atataaggga ccccgcagtg ttcgtcagaa      4620
     atcgtccatg gagagtaata ttcaagaacg ttttggatca tcggattgtt tctggaaatc      4680
     gatctatgtg gtacacagcg gttcatggga gaattattac caacgaaatg ctgtttaacc      4740
     aaaatcgtcg aacttctcca aattgcctaa gatgtccagg aatcactgaa acagctgagc      4800
     ataagttttt cgagtgtcaa ctatctaagc ctgtatggat gttcgcgttg tctaaaatgg      4860
     tagccattcg acctctgctt cgcagaaaga aaccagaata cttcctattc cctgaaatgc      4920
     gaggtgtacc atctagagaa gcgctagaaa ttaaacatat ctttgcaaag tacattagtt      4980
     ttatatgcaa tacacctgaa gcaaacatta atgtagataa ttttagattt gaattgtaaa      5040
     ttttgataga cttaatgttg tactctaata aagacatggt aaaaaaaaaa aaaaaaaaaa      5100
     aa                                                                     5102
//
ID   L1-36_AAe   repbase;    DNA;    INV; 4386 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-36_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4386
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1389-1389 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           139..1140
FT                 /product="L1-36_AAe_1p"
FT                 /translation="MTRRENTFRIDLANIPKKPSYEEIHNFVATKLGLQRH
FT                 HVQRIQCSRSASCVFVKVADLELAQKVCEEHDAKHEIIVDNDKFVLRIRME
FT                 DGAVEVKLFDLPEDISEKCITDFLSAYGEVLSVREQLWTEQYTFGGASTGV
FT                 WIARMIVKRNIPSYVIIDGETTFLSYYGQLQSCKHCGEYVHNGASCVQNKK
FT                 LLIQKMSADAPAKQSYANVAKKSAVTRAMIAPKPTKPSPAVQQQQEPITEA
FT                 NATHTSSTIKPPAVFQTPALPATLKKSSGVRHHQQQHQPKEKQQQPPKQNR
FT                 NNDGGETDESTSSNTSRRSRRHIEKKPRYDDVDISPDEAIGN"
FT   CDS           1143..4334
FT                 /product="L1-36_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEFTSYNFVTININNITSETKLNALRTFLRTMDSDIA
FT                 FIQEIESDKLTLPGYNVICNVDHERRGTAIALKDYIRFSHVERSLDGRITS
FT                 LRVHDTTLVCLYAHSGTSLRPQRERFFNHTLAYYLRHGTPHTVLAGDFNCV
FT                 LRQCDSTGRNDSPSLRATVQQLQLSDVWIKLRPQTPGHTYISVNSSSRLDR
FT                 FYISSSLCNQLRSVQTHVCSFSDHKAVTARLCLPSLGRAPGRGFWSIRPHL
FT                 LTQENIEEFRYKWQFWTRQRRNYPSWILWWISFCKPKIKKFFRWKSKLAFD
FT                 DFHREHQRLYTLLCEAYDNLPGRPHLRTTINQTKAKMLALQRKFTHMFIRI
FT                 NETYVAGEAMSTFHLGERRRKRTTITQLRNEDGETTDQSDEIERSLLRYFA
FT                 ELYTEPQIEETIDDSFNCERIIPEGDEINEACASEITTAEIWTAIRTSAAK
FT                 KSPGTDGIPKEFYHRTFDIIHREVNLVLNEALSGRIPSEFVDGVIVLIKKK
FT                 NGDGTARSFRPISLLNFDFKILSRVLKARIELVMRTHHLLSPAQKCANSPR
FT                 NIFQATLSLKDRIARLIRNKQKGKMITWDLDHAFDRVRQSYLYNTMRSLGF
FT                 HHGLVDLLARIDNLSSSRLLINGHLSEPFAIQRSVRQGSPLSMHLFVLYLH
FT                 PLISKLENVSDGDLIVAYADDITVLSTSIDRIERMRELFSRFERASGAKVN
FT                 WEKTLSLDVGFIAGNPLYLPWLRTENTVRVLGVIFANSIRLMVKLNWDAML
FT                 VKFSRLVWLNSMRSLTIFQKVILLNTFVTSKVWYLASIISPYCVHTGKITA
FT                 TIGRFIWSNTVTRIPLCQLAREREQGGLKLHLPTFKCKALLINRHIQELDS
FT                 IPFYKSHILPDNPDQNIIPADLPDLKIIYSQYQQLPLQIQQSPSSDAIHRY
FT                 FVEQTEVPRVERLHPEFDWKRIWASLRWRAFTSTEKSILYMTINEKGAHRE
FT                 LLHTIGRADSNTCFHCNITIETMQHRFSDCPRVRPAWEFLQSKIRVVLGVW
FT                 RTVSFSDLLRPVLNRICKVKRILILKLFAHYIMFVNNNENQIDINALEFYL
FT                 NCELNNS"
XX
SQ   Sequence 4386 BP; 1316 A; 1035 C; 917 G; 1118 T; 0 other;
     cagtttgtgt tcaacttcca tagcaggcgg acctttcgtt atcgctactg gaagccccgg        60
     gcattttgat atcacgagtg ttcttccgtt tcaattagtg tcgcgaagtt ataccgtgtt       120
     tcgcggttag ctttcggtat gacacgtcgc gaaaatactt ttcgcatcga tctcgcgaac       180
     atcccgaaaa aaccaagcta cgaagagatc cacaatttcg tggcaactaa gcttggactg       240
     caacgccacc atgtacaacg aattcaatgt agtcgtagtg cgagctgtgt attcgttaaa       300
     gtcgctgatc tcgaattggc tcaaaaagtg tgcgaagaac atgacgccaa acacgaaatc       360
     atcgtggata acgacaaatt cgtgctgaga atccgaatgg aggatggagc cgtggaagtt       420
     aaactttttg atcttcccga agacatctct gagaaatgca tcaccgactt tctgagtgcc       480
     tacggcgagg tactctctgt acgagagcaa ttatggactg agcaatacac tttcggaggt       540
     gcttcgaccg gtgtgtggat agcacgaatg attgtaaagc gaaacatacc ttcctatgtg       600
     attattgatg gagaaacaac cttcctgtct tattatggac agctccaatc ctgtaaacac       660
     tgcggggagt atgtccataa tggagcgtca tgtgttcaaa acaaaaaact tttaattcag       720
     aagatgtccg ctgatgcacc agcaaagcaa tcctacgcaa acgttgccaa aaagtcggct       780
     gtgacaagag caatgattgc gccaaaacca acaaaaccat cccctgcagt tcagcagcaa       840
     caagaaccta tcaccgaagc taatgcaact cacacttcct ccacgatcaa gccaccggca       900
     gtgtttcaaa caccggctct ccctgcgacg ttgaaaaaat cgagcggcgt ccggcatcat       960
     caacaacagc accaaccgaa ggagaaacaa caacagcctc cgaagcaaaa tcgtaacaac      1020
     gatgggggtg aaaccgatga gtccacatca tccaacacca gcagacgatc tcgacgacac      1080
     atcgaaaaga aaccacgcta cgatgacgtt gatatttctc cggatgaagc aattgggaac      1140
     taatggaatt cacgagctat aattttgtaa cgatcaacat taacaacatc accagtgaga      1200
     ctaaactaaa cgccttgcga acattccttc gcactatgga ctcggatatc gcattcatcc      1260
     aagagattga gagcgataag ttgacgttgc ctggatacaa tgtaatctgc aatgttgacc      1320
     atgagaggag aggaacggcg attgccctaa aagattatat aaggttttcg catgtagaga      1380
     gaagtctcga tggccgcatc acatccttac gagtccacga tacaactctt gtttgcctat      1440
     acgcacacag tggaacctct ttgcgaccac aacgagaacg gttttttaac cacacactag      1500
     cctactatct acgtcacggt accccgcaca ctgtactggc tggagatttt aattgtgtac      1560
     tccgacagtg tgactctact ggacgaaatg acagcccatc tcttcgagca acagttcaac      1620
     agctacaact atcagatgtt tggatcaagc ttcgacccca aactcccggt catacttata      1680
     tttcggtgaa ctccagctcc agattagacc gtttttacat tagctccagt ctctgtaatc      1740
     agcttcgctc tgtccaaact catgtatgtt ccttctcgga ccataaggca gttacagcac      1800
     gattatgtct cccttctctc ggcagagcac ctggtcgagg gttttggtcc atacgcccac      1860
     acctcctcac tcaggagaat atagaggaat ttcggtataa gtggcagttc tggacaagac      1920
     aacggcgaaa ttatccctcc tggatacttt ggtggatttc cttttgcaag cctaaaatca      1980
     aaaaattctt tcgctggaaa tctaaactcg cctttgacga ttttcaccga gaacatcaga      2040
     gattgtacac attactatgt gaagcgtatg acaatcttcc tgggagaccc cacttgcgca      2100
     ctacgattaa ccagacgaaa gcaaagatgc tcgctttgca acgaaaattt acacacatgt      2160
     tcatcagaat caacgagacg tacgttgcag gagaggcgat gtcaacattc cacctcggag      2220
     aaagaaggag aaaacgaacg accataactc agctccgaaa tgaagatggt gagaccacgg      2280
     atcaatctga tgaaattgag cgtagtctgc tacgttattt tgccgaactc tacaccgaac      2340
     cgcaaatcga agagactatc gatgacagct tcaactgcga gaggataatt cctgaaggtg      2400
     acgaaataaa tgaagcctgc gccagcgaaa tcactactgc cgaaatatgg actgccatcc      2460
     gaacaagcgc agcaaaaaaa tcccccggca ccgatggaat cccgaaagaa ttttaccacc      2520
     gtactttcga tataatccat cgtgaagtta accttgtatt gaacgaggct ttgtctggac      2580
     gtattccttc cgagttcgtg gatggtgtga tcgtattgat caaaaaaaag aacggcgatg      2640
     gaacagcacg ctcgtttcgg ccgatttctc tgctgaattt cgacttcaag atactctccc      2700
     gagttctgaa agctcggata gaactcgtca tgcgaactca ccatttgcta agtccagccc      2760
     aaaaatgcgc gaactctccc cgtaatatat ttcaggcgac tctctcgcta aaagatcgta      2820
     tagctcgtct gatacgaaat aaacaaaaag gaaaaatgat cacgtgggac ctcgaccatg      2880
     cattcgaccg agtgcgacaa tcgtatttgt ataataccat gcggtcactc ggcttccatc      2940
     atgggctggt agatctactg gctcgaatcg acaacctttc ttcttctcgt ctcctcatca      3000
     acgggcatct ttcggaacca ttcgctatac agcgatctgt tcggcaggga tcaccactaa      3060
     gcatgcatct atttgtgtta tatttgcacc cactgataag taaattggag aatgtatctg      3120
     atggagacct catcgttgca tacgcagatg atatcaccgt actttctaca tcaattgatc      3180
     gtatagagcg aatgagagaa ctcttttctc gcttcgagcg cgcctctggg gcgaaggtga      3240
     actgggagaa aacattatca ttggacgtag gcttcattgc ggggaatccc ctatacctcc      3300
     catggctgcg aactgaaaat acagtgaggg tccttggtgt aattttcgct aactcaattc      3360
     gtctcatggt gaaacttaac tgggatgcaa tgctcgtaaa gttttctcga ttagtctggc      3420
     taaattcgat gcgttcatta accatatttc aaaaggtaat actattaaat actttcgtaa      3480
     cttcgaaagt atggtatctt gcatcaataa tttcaccata ttgcgtgcac acgggcaaaa      3540
     tcacggccac tattggccga tttatttgga gcaatactgt cacgagaata ccattgtgtc      3600
     aactagcacg tgaacgtgaa caaggtggtt tgaagctaca cctgccgact ttcaaatgta      3660
     aggcattact gatcaatcgg catatccaag agctagactc gattcctttc tacaaatctc      3720
     acatactgcc cgacaatcca gatcagaaca tcattcctgc ggatctgccg gatttgaaga      3780
     tcatatacag tcaatatcag cagctcccac tgcaaattca acaaagtccg tcatccgatg      3840
     ctatacaccg ttattttgta gagcaaactg aagtaccgag agtagagagg ttgcatcctg      3900
     aatttgactg gaaaagaatc tgggcgtcgc tgcgctggcg tgctttcaca tcaacggaga      3960
     agagtatcct gtacatgaca ataaatgaaa aaggggcaca cagagaatta ctgcatacga      4020
     tcgggcgggc tgacagcaat acatgctttc attgtaatat taccatcgaa actatgcaac      4080
     acagattcag cgattgtccg agagtccgtc ctgcgtggga attcctacag agcaaaataa      4140
     gagtagtatt aggcgtttgg agaacggtat cgttttcaga ccttttgaga cctgtcttga      4200
     acagaatttg caaagttaaa cgtatcttaa ttctcaaact gtttgcacac tacataatgt      4260
     ttgtcaacaa taatgaaaat caaattgata ttaacgctct tgaattctac ttgaactgtg      4320
     aattgaataa tagttaagtt tattttatat acttttgacc gcaataaaaa tctttaaaaa      4380
     aaaaaa                                                                 4386
//
ID   L1-37_AAe   repbase;    DNA;    INV; 4760 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-37_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4760
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1390-1390 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
CC   ORF2 is broken.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..1197
FT                 /product="L1-37_AAe_1p"
FT                 /translation="MATKNRRENTFRIDYGNVPKKPSSEEVHQFVGETLKL
FT                 KRDEVQRIQYSRNLGVAFVKTTSLEVAQKVVENNDNKHELIVDGKSFKLRL
FT                 AMEDGAVEVKLFNLSEDVTNSKIARFLMSYGELLSIREEVWDEKHLFAGLP
FT                 TGVRVVRMIVRKNIPSYVTIDSETTLVSYYGQQQSCRHCGESVHNGVSCVQ
FT                 NKKLLVQKLATSGTSYADAAKNPLPSRTQIGSKQQRTKLALPKSTPPKDSL
FT                 PTNAAPSPTPSTSTTMPPPASVIHRATEVAEMTNLPPDQQQDAEAEPWVRV
FT                 TRRSAKNSDGNETDTSNSSRYSDRRPIGKKNETRQKRNQSCHRPETLSRSL
FT                 H"
FT   CDS           join(1280..2128,2598..4313,4317..4634)
FT                 /product="L1-37_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MQLDIVFMQEVENEQLTLPGFNVIANVDHSRRGTAIA
FT                 LKDHIQFSHVERSLDGRLTAVRILDTTLCCIYAPSGTAYRAQRERFFNSTI
FT                 AYYLRHRTEHLLLAGDFNCVLRQSDATGSNSSPSLQSTVQQLQLNDAWIKL
FT                 RSRDAGHTYITANSSSRLDRIYVSGGLCEQLRRIETHVCSFSDHMAVTLRV
FT                 CLPHLGRPQGRGFWSLRPHLLTEENITELQIRWQFWTRQRRNFASWMDWWL
FT                 EFAKSKIVSFFRWKSKQIYDEYHHAHENLYSQLRRAYTEKNITTRKRFKTK
FT                 YCNTSPNYIEKRMVRRSDLTIFSVTRLSRKTTQRTNERCMEEITTADVWAA
FT                 IKSSASKKSPGPDGIPKEFYQRAFDVIHREINLIMNEALNAQFSHKFVEGV
FT                 IVLVKKSGTGNTLASYRPISLLNFDYKLFSRILKARLDSVMKANHILSNAQ
FT                 KCSNGHNNIFQATLALKDRIAQLAATKRVGKLVSFDLDHAFDRVRHSFLYS
FT                 NMRSLGIHPQLVDLLSRISALSSSRLLVNGYLTTAFPIQRSVRQGDPISMH
FT                 LFVLYLHPLLTSLETVCGTDLIVAYADDVSVVATSAQKVHAMRDLFQRFGR
FT                 VSGAVLNLRKTTSVDVGFINGNPIIVDWLKTENHIKILGVLFANSIRRMIT
FT                 LNWDRLVGKIAQQVWLNSLRTLTLHQKIFLVNTYITAKAWYLASILPTYSV
FT                 HSAKITATIGTFLWRGQPARIPMIQLARLKEQGGLKLQLISMKAKSLLINR
FT                 HLREIGSIPYYNSVISQANPNVAADLPCLKTILQARQSLPTQILQNMSSDQ
FT                 LHRYYVDQTDRPRVELRYPAVNWRRVWFNIGNNNFTPAQRSHWYLLVNEKV
FT                 EHQLWCTIRRADNDQCVHCNAAIETLKHKFNECPRVAAAWEHLQNVLMNIL
FT                 NGRRIPFEQMLHPELHNTNRTQRLYAMKHIINYVAFVNKCDNRVDVDELEF
FT                 YLNVEL"
XX
SQ   Sequence 4760 BP; 1464 A; 1132 C; 986 G; 1176 T; 2 other;
     cagtttgtgc tcaacttccg agccgatcag acgcattccg cgtttcataa gtcgtctgcg        60
     gaagccaacc gtcggtttat atcgattttc agtgattctg tagaagcacc gttagtgaag       120
     taccgcgagt ttctttagtt ttcgtttcgc tggcatcgtg tcacgatggc cacgaaaaac       180
     cgtcgcgaga acactttccg tattgattat ggaaacgtgc cgaagaagcc atcctccgaa       240
     gaggttcacc aattcgtcgg agagacgctt aagctgaagc gagatgaggt gcaacgtatc       300
     caatacagtc gcaaccttgg agtcgccttc gtcaaaacta cttcgctcga agtggcacaa       360
     aaggtagtcg aaaacaacga taataaacac gagctcatag tagatggaaa gtctttcaag       420
     ctacgtctag ctatggaaga cggagcggtt gaggtcaagc tcttcaacct ctctgaggac       480
     gtcacgaaca gcaaaattgc tagatttctg atgtcgtatg gagagttact ctcaattcga       540
     gaggaggttt gggatgagaa gcatcttttt gctggactcc cgaccggtgt ccgagtcgta       600
     cggatgatcg tccgcaaaaa tatcccatcc tacgtgacaa tcgactctga aaccacgctc       660
     gtgtcttatt atgggcaaca acaaagctgt cgtcattgcg gcgaatctgt acataatggt       720
     gtttcatgtg tacagaacaa aaaattgttg gtgcaaaagt tggcgacaag cggcacgtca       780
     tacgctgatg ccgccaaaaa cccgctcccc tctcgaactc aaatcggttc gaaacaacag       840
     cgcacgaagc tagccctccc gaaatctaca cctccaaaag attcgctccc tactaacgca       900
     gcaccaagcc cgacaccctc gactagcacc accatgcctc ctcctgctag tgtaatccat       960
     cgtgctaccg aagtcgccga aatgacaaat ctgccacccg atcaacaaca agatgcagaa      1020
     gccgaaccgt gggtgagagt aacgcgccgt tcagcgaaga attctgatgg caacgagacc      1080
     gacacttcca actccagtcg gtactctgat agacgcccga ttggtaaaaa aaatgagaca      1140
     cgacaaaagc gaaaccaatc atgtcaccga cctgaaactc tgagccgctc tcttcactag      1200
     ctacaatatt gctaccatca acctaaacac catcacgaac aacaacaaaa tcaacgcgct      1260
     gagaacattc gtccaaacaa tgcaactgga cattgttttc atgcaagaag ttgagaacga      1320
     gcaactcact ctccccggct tcaatgtaat tgccaacgtc gaccattcca gaagaggcac      1380
     agcaatcgca ttaaaagacc atattcaatt ctctcatgtg gagcgaagtt tggatggccg      1440
     tctaaccgca gtccgcatcc tcgatacaac cctttgttgt atttatgctc cgtctggcac      1500
     agcgtaccgt gcgcagcgag aacgattttt caatagcact attgcatact atcttcgtca      1560
     ccgaactgag catttgttac tagccggaga cttcaactgc gtactgcgac agagcgacgc      1620
     aacagggtct aattcgagcc cctctctgca atctactgtc cagcagctac agctcaacga      1680
     tgcttggata aaattacgct ctcgagacgc cggacacacc tatattacag cgaattcatc      1740
     atcacgtcta gatcgcatat acgtaagcgg agggctatgc gaacagctac gtaggataga      1800
     aactcacgtc tgctcattca gcgatcacat ggctgtgacc cttcgagtat gcctgcctca      1860
     tctcggtcga cctcaggggc gaggattttg gtcgctccgt ccccaccttc tcaccgaaga      1920
     aaatatcaca gagcttcaaa ttcgttggca gttctggacg cgccaaagaa gaaactttgc      1980
     cagctggatg gattggtggt tggaatttgc caagtcgaaa attgtcagtt tcttccgctg      2040
     gaaatctaaa cagatatacg atgagtatca tcatgcacac gaaaatctgt acagccagct      2100
     gagacgtgcc tacacagaaa aaaatattta attttaaatg tggtgtaaac tgaagtgtag      2160
     tgtaaaatta aatcaaattc gtgtattttt acagcatcat gtaaacttaa atgaatatac      2220
     gctcaatttt caatcaaaac tggttaaatt ttacatgatc atgtaaattt aaagtggatt      2280
     cgattgaaaa ataatggatt ggtcgttgaa atttaggttt attttgatgc tccaaatatg      2340
     tgcatcaaaa taaacttaat tttacgacat ttttttagct gtgtacaacg ggtactatca      2400
     aaatccaaga atgttgtcta cgataaaccg cccgaaaggg gagttactgg cactacaacg      2460
     tcgtttcact catactttca cgcggataaa tgagccaata ctagcgggag agcctctctc      2520
     gacatttcag ctgggcgata ggagaaagaa gcgtaccact attacacgac tcgatgatga      2580
     acaaggtgga accataaacg actcgcaaac gattcaaaac gaaatactgc aatacttctc      2640
     cgaactatat agagaaacga atggtgagac ggagcgactt gacgattttc agtgtgacca      2700
     gattatcccg caaaacgacg caacgaacga acgaacgatg catggaagag attaccactg      2760
     cggatgtttg ggccgcaatc aaatcaagtg cgtcaaagaa atcgcctgga ccggatggaa      2820
     ttcccaaaga attttaccag cgagctttcg atgtcattca tcgagagata aatctgataa      2880
     tgaacgaagc cctaaatgca caattttctc acaagtttgt tgaaggcgtt atagtacttg      2940
     tgaaaaagtc aggaactggc aacactcttg cttcgtacag acccatttcg cttctaaact      3000
     tcgactataa actgttttcc cgcatactga aagcgcgttt ggacagcgtg atgaaggcca      3060
     accacatact aagcaatgct caaaagtgtt caaacggaca caacaatatc tttcaagcca      3120
     ccctagcgct aaaggatagg attgcacagc tggcggcgac gaaacgggtg ggcaagcttg      3180
     tgagtttcga tctagaccac gctttcgatc gggtgagaca ctcgtttctg tacagtaata      3240
     tgcgttctct cggcatccat ccccaactcg tggatctgct atctagaatc tctgctctct      3300
     catcatctcg tctgcttgta aacggatacc taacaactgc ctttcccatt caacgatcgg      3360
     tgagacaggg agatccaatc tcgatgcatt tatttgtgtt gtatttgcat cctctcttga      3420
     cctctctcga aacggtctgc ggcactgact tgatcgtcgc atatgccgat gatgtaagtg      3480
     tggttgccac atcggcgcaa aaagttcatg ccatgcgtga cttatttcaa cgcttcggaa      3540
     gagtttcagg tgccgtattg aaccttcgaa aaacaacttc tgtcgacgtc ggcttcatca      3600
     acggcaaccc tatcattgtg gattggttga aaaccgaaaa ccacatcaaa atactaggcg      3660
     ttttgtttgc aaactcaata cggcgcatga taacccttaa ctgggacaga ttagttggga      3720
     aaatagcaca gcaagtttgg cttaattcgc ttcgcacact taccctacat cagaagattt      3780
     ttcttgtcaa cacttacatc acggccaaag cttggtatct tgcatcgatt ctaccaacct      3840
     actctgtaca ctcagctaag ataacggcaa ccatcggaac attcttgtgg agagggcaac      3900
     ctgcacgcat accgatgata cagcttgcaa gactgaagga acagggtggg ctcaaactcc      3960
     agctaatatc tatgaaagcg aaatctttgc taattaatcg tcaccttaga gagattggct      4020
     caatcccata ttacaattcc gtmatttccc aagcaaatcc taatgtcgct gctgaccttc      4080
     cttgcttaaa aactatcctg caggcgcgcc aaagcctgcc cacccaaatt ctacaaaaca      4140
     tgtcctccga tcaattacat cgctattatg tcgatcaaac cgatcggcca agggtcgaat      4200
     tgcggtatcc tgcagtaaac tggcgacgcg tgtggttcaa tataggaaat aacaacttta      4260
     ctccagctca acgcagtcac tggtatctcc tagtgaacga gaaagtggaa cactaacagc      4320
     tgtggtgtac tattcgtcga gcggacaacg accagtgcgt tcactgcaat gcagcgattg      4380
     aaactctcaa gcataagttc aatgagtgtc ctcgagtggc tgcagcatgg gaacatctgc      4440
     aaaacgtatt gatgaacatc ctgaatggcc ggagaattcc gtttgaacaa atgctacacc      4500
     cagaattaca taacacgaac agaacacaaa gattatatgc aatgaaacac atmattaatt      4560
     acgtcgcttt tgtcaataag tgtgataaca gagtagacgt agatgaatta gagttttact      4620
     tgaatgttga attatgatta attgcaaaat attcaatgta attagttttt aaacaaatca      4680
     actgaaataa acaatacttt tacaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4740
     aaaaaaaaaa aaaaaaaaaa                                                  4760
//
ID   L1-38_AAe   repbase;    DNA;    INV; 5187 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-38_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5187
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1391-1391 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1952..5119
FT                 /product="L1-38_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDSLSFNLATINIANIYSPTKIDALNSFLRLNEIDIV
FT                 FLQEVENTSIQLTGYSIVFNIDNRNRGVAIAHKPSIEYTAVQNSLDGRLIT
FT                 ITLKNGVTLCNIYAPTGAQNRASREDFFNFTCANYLRNCTGPIIFGGDFNS
FT                 VVNPRDATGATSRSNMTSRLMSSLDLIDVWRVLHRNETDYTFVRAGSSSRL
FT                 DRFLVSRSSTSWLRTINHSVTCFSDHKAVLMRMVLPITGPIIGRGLWRLNP
FT                 HVLEDEDTQNRFQARWNYLVRQKQNYRSWSSWWLDYAKPKVASFFRWRTSL
FT                 QIQDFRNTMNLLHGELTRAYQLYANDATQLTRINRIKSIMLLKQRESSSNW
FT                 RQLKETYLKGEPTSLFHLSEKNYKRSKTLITELDVGGDMINDSGQIEQCVV
FT                 TYFEDLFQENRQQPTGSTFLPTLRIPDQNVANEILMDPIEVNEIHRCIKNS
FT                 SARKSPGADGLPKEFYLKCWNTISREFTLILNEMLHGPNIDPRMMNGIVVL
FT                 VKKKGVCKTMNGYRPITLLNFDYKILTRILKQRMAPLLEFVLSKHQKCANG
FT                 KRNIFQATSKILDTLSALKHSKKSSLLVSFDLDHAFDRVKHSFLLQTMQRM
FT                 NFNAQLVELLKRIMENSSSRILINGKLSRAFQIHRSVRQGDPLSMFLFVIY
FT                 MQPLIDKIVESGDAVEGLNVYADDISIFVPNMQTLQRVVQVIREFQTTSGA
FT                 ILNLQKTVALKIGNISSGDQLPWLNFSNFVNILGIRFCCSVKQTMESTWIN
FT                 VIKNMKWRLWMSRSRSLNLIQKIILINTFVSSKMWYTASTLPLPKKFEQQI
FT                 LKEYRNFLWIGGKNHIRLETLFLTKNRGGLNLHCPGLKSVSLLTNRILENL
FT                 YDLPFLRGLLNTDQILQIPAAYPQVKVFALEVATLANKTLEHHSSSNIYSE
FT                 LLLAENDPEVLSVNRRWKVIFKYIADHRIHSQYRSVWYTAIHGKINHNELF
FT                 YKQRRRDSPLCDRCPGVIDTVEHKLFSCLVSKPVWIFVKSIISRMKPALQR
FT                 KSPNYFLFPELRGIPSREALKINQLFAKFVYFICCTPEEQINVSSFKLEL"
FT   CDS           join(143..1096,1042..1941)
FT                 /product="L1-38_AAe_1p"
FT                 /translation="MAGFRKNSIVIDFSVMPVRPKLNVVQEFLFKQMSLDM
FT                 SLVKNLQTSITKSHVIIELDSAATAENVVMLHNMKHTLEHDKQLYHIPVHP
FT                 TDNAIEVKVYDLPPHMPNNLISAQFSAYGKVLSVKNDVWKDYFPGIPNGVR
FT                 IIRMEIQTPIPSYVPVAGELSYVLYSNQVKTCRHCTQKVHIGKTCSAARKE
FT                 SSQNAGEKSTLAEIVSNSQASTNESPIELMEATDSESDDESVASKEATTTQ
FT                 LSTADSLATTMKKTSKSPETPNFSQPVASTSNSSKIVTSETETDPLGGRKR
FT                 TLSPKQAEQESQRPQRRTKSQRHTSKARITTTSTPNKISATHFKVRITFFT
FT                 IEAKHSVPCYLHVHLRKPSLEHLNFSKVKIHCICLAVAPSDTAVLKISINS
FT                 SELHLQNRVINCNSKHHHRPKSISPLEQHFPSKVKTKSICPVEVYLDATVL
FT                 KSTTISVEAVPSFICPWDCDDCSCRLEGFPSLEHRPFRKVIKHSICPAVAF
FT                 LDTAAPVKQISTSVGQITTAALSSAKSSARVCRQKDTISETQLPRSRCLTN
FT                 ISNNQIVVYGRTPTTQVSDNRDKPADNRQLVIRVTIIHTANDLTANDKSQR
FT                 PGTLLRAHFTARVHFVYLTL"
XX
SQ   Sequence 5187 BP; 1649 A; 1153 C; 1014 G; 1371 T; 0 other;
     cagttgacat ttaggcttca tacgaaacag acgtgtattg tttgccaagt gaaaacaccg        60
     catatatttt cgctaatcgg actttgtccg aaaggcttat tcattaagtt ttcgtgtaaa       120
     cgactagtta tcatccttaa ggatggccgg attccgcaaa aactcaatcg taattgactt       180
     tagcgtcatg ccagtacgac caaagctgaa cgttgtgcaa gagttcctgt tcaagcagat       240
     gtccctagac atgtcgctag tcaaaaacct gcagacaagc attactaagt cccatgtcat       300
     catcgaactg gactccgcag caacagctga gaacgtcgtt atgctgcaca acatgaagca       360
     tacacttgag catgacaaac agctctacca tatcccagtg cacccgacag acaacgccat       420
     tgaggttaag gtgtatgact tgcctccaca tatgccaaac aatctcatct cagcgcagtt       480
     ctcagcttat gggaaggttc tctccgtgaa gaacgatgtc tggaaggact atttcccagg       540
     catccctaac ggagtgcgaa taattcgtat ggaaatccaa acgccgattc cttcgtatgt       600
     ccccgtggcc ggagagctgt catacgtcct gtacagtaac caggttaaga cctgtaggca       660
     ttgtacccag aaggtccata tcggaaagac atgttcggct gctcgaaagg agtcttccca       720
     gaacgcagga gagaaatcaa cattagccga aattgtcagt aactcgcaag ctagtaccaa       780
     cgagtccccg atagaactca tggaggccac agatagtgaa tctgatgatg aatcagtcgc       840
     gtcaaaagaa gctactacca cccagctctc cacggccgat tcactggcca caacgatgaa       900
     aaaaaccagc aaatctcctg aaacgcccaa cttcagtcaa cccgtcgcct ctacatcgaa       960
     ttcgtcgaaa attgtcacct cggaaaccga aacagatcct cttggaggtc gcaaacgaac      1020
     tctgtcgccg aagcaagctg agcaagaatc acaacgacct caacgccgaa caaaatctca      1080
     gcgacacact tcaaagtaag gataactttc ttcaccatcg aagccaaaca ttccgtacca      1140
     tgctatctac atgtccatct acgcaaacca tcgttggagc accttaattt ctcaaaggta      1200
     aaaatacatt gtatatgtct agccgtagcg ccatcagata ctgccgtcct gaaaatttca      1260
     ataaactcct cagaactcca cctgcaaaat cgtgtcatca actgtaattc aaaacatcac      1320
     catcgaccaa aatctatttc accgttggag caacactttc cttccaaggt aaaaacaaaa      1380
     agtatatgtc ctgtcgaagt gtatttggat gctaccgtcc tgaaaagtac aacaatctcc      1440
     gtagaagccg taccgagttt tatctgccct tgggattgcg atgactgttc atgccggctg      1500
     gaaggtttcc catcgttgga gcatcgccct ttccgtaagg taataaaaca tagtatatgt      1560
     cctgccgtcg cgtttttgga tactgccgca cctgtcaagc aaatttcaac atccgtaggc      1620
     caaatcacaa cagcggctct ctcttcagca aaatccagcg cacgagtatg tcgacagaag      1680
     gatacaatat cggagacaca actaccacga tctcgatgct tgacgaacat cagcaataac      1740
     caaattgttg tttacggtag gacaccaaca acacaggtga gcgataacag agataaaccg      1800
     gctgacaata gacaacttgt cattagagtc actattatac acactgcaaa tgatttaaca      1860
     gcaaacgata agtctcagcg accgggaacg cttttgagag ctcacttcac ggctagggta      1920
     catttcgtat acttgactct ttaaaataca aatggattca ttgagcttca atttagcaac      1980
     cataaacatt gctaatatat acagtccaac taaaatagat gctctcaatt ccttcctacg      2040
     gttaaacgaa attgatatag tttttctgca ggaagtcgaa aatacgtcta tacaactgac      2100
     aggttactca attgttttca acattgataa tagaaataga ggtgtagcaa tcgctcataa      2160
     gcccagtatt gaatacacag cagttcaaaa ttctctggat ggtaggctaa taacgataac      2220
     actgaaaaat ggggtcacgc tgtgcaatat ttatgcccct accggagcgc aaaatagggc      2280
     atcacgagaa gactttttca acttcacttg tgcaaattat ctcagaaatt gtacaggacc      2340
     gataatcttt gggggtgatt tcaattccgt tgtaaatccc agagacgcga ctggtgctac      2400
     ctcacggagt aatatgacgt cacggctaat gagttcctta gacctgatcg atgtttggcg      2460
     tgttctacat cgaaatgaga ccgattatac tttcgtgcgt gctggatcgt cctcgaggct      2520
     agataggttc ctagtttcta gatcgtccac tagctggcta cgaaccatca atcattcagt      2580
     tacgtgcttc agcgatcata aagcagtgtt aatgcgaatg gttttaccaa taactggtcc      2640
     catcatcggg agaggcctat ggcgactcaa ccctcatgtt ttagaggatg aagatacgca      2700
     aaaccgtttt caagctagat ggaactactt agtccgacaa aagcaaaatt atcgttcctg      2760
     gtcatcatgg tggttagatt acgcaaaacc taaagttgca tccttttttc gttggcggac      2820
     ttctcttcag attcaagact tccgtaatac tatgaatctc ttacacggtg aactaactag      2880
     ggcttatcaa ctgtatgcca atgatgcaac acaattgaca cgaattaata ggatcaaaag      2940
     cattatgcta ttgaagcagc gtgagtcatc aagcaactgg cgacaactta aggaaactta      3000
     tctgaaagga gagccaactt ccttatttca tttgtcggaa aagaactaca agcgttcaaa      3060
     aaccttgatt acggaattgg atgttggagg tgatatgatc aacgacagtg gtcaaataga      3120
     gcaatgcgtt gtcacatatt tcgaagattt gttccaagaa aatagacagc aaccgacagg      3180
     aagtaccttc ctacccactc ttcgcatacc cgatcaaaat gtagcaaacg aaatactaat      3240
     ggacccaatt gaagtcaatg aaattcatcg ctgcattaaa aatagttctg ctagaaaatc      3300
     accaggagct gatggactcc caaaagagtt ttacctgaaa tgttggaaca cgataagtcg      3360
     tgaatttacc ttgatcttga acgaaatgct acatggtcct aatatagatc cacgcatgat      3420
     gaatggaatt gtcgttctag tgaagaaaaa gggagtctgc aaaacaatga atggctatcg      3480
     tccaattaca ctgctgaatt tcgactacaa aattctaact aggattttga agcagagaat      3540
     ggctccatta ttggaatttg tcttatccaa acatcagaaa tgcgcaaatg ggaaacgcaa      3600
     catttttcaa gcaactagca aaattctaga tacgctttcc gctctaaaac actccaaaaa      3660
     atcatcactg ttagtgtcct tcgaccttga tcatgctttt gacagggtga agcatagctt      3720
     tcttctacaa acaatgcagc ggatgaactt caatgcacaa cttgtagaac ttctgaaaag      3780
     aataatggaa aactcttcat cgcgaatact catcaatgga aaactgtcaa gggcgttcca      3840
     aatacaccgg tcggtgaggc aaggagatcc gctcagcatg ttcctctttg ttatatatat      3900
     gcaaccattg atcgacaaga ttgtagaatc aggggacgct gttgaaggat tgaacgttta      3960
     cgcggacgac atcagcatat ttgttcctaa tatgcagaca ttacaacgtg tagtgcaggt      4020
     aatccgggag tttcaaacca catctggcgc aatcctaaat ctgcagaaaa cggttgctct      4080
     gaaaatagga aatatttcgt caggagatca gctgccttgg ctaaacttct ctaatttcgt      4140
     aaacatccta ggcattagat tctgctgcag tgtcaaacaa actatggagt caacatggat      4200
     caacgtaatc aaaaacatga aatggcgttt gtggatgagc agatcgcgct cgttgaattt      4260
     aatacaaaag ataatcttga taaacacctt cgtatcctcc aaaatgtggt acacagcgtc      4320
     aacgctccca ttaccaaaaa agtttgaaca acaaatcctt aaggaataca ggaatttcct      4380
     ttggattggt ggcaaaaatc acatacgcct tgaaactctt tttctgacga agaaccgtgg      4440
     tggcttaaac ctgcattgtc cggggttgaa atctgtgtcg ttattaacga acagaattct      4500
     tgagaatttg tacgatctgc cgtttttacg tggactttta aatacggacc agattcttca      4560
     gattccagct gcttaccctc aagtcaaagt atttgctttg gaagtggcaa cactggccaa      4620
     taaaactctg gagcaccata gttcttccaa catatattca gaactacttt tagcggaaaa      4680
     tgatcctgaa gtgctgagcg ttaatcgtcg ttggaaggtg attttcaagt atatagcaga      4740
     tcatcgaatt cattcacaat atcgctcagt ttggtatacc gcaatccatg ggaagattaa      4800
     tcataacgaa ttattctaca aacaaagacg ccgagactct cctttatgcg accgttgtcc      4860
     aggtgtcata gataccgttg agcataagct tttttcgtgt cttgtgtcaa aacctgtttg      4920
     gatttttgtg aaatcaataa tttcaagaat gaagccagcc cttcaacgga agtcaccgaa      4980
     ttattttctt tttcctgagt taagaggcat accatccaga gaagcactca aaattaatca      5040
     gctttttgca aaatttgtat acttcatatg ttgtactcca gaagaacaaa ttaatgttag      5100
     tagttttaag cttgaattgt aaatctaaaa gttttataag tcagtactct aaataaattc      5160
     agaccaagat aaaaaaaaaa aaaaaaa                                          5187
//
ID   L1-39_AAe   repbase;    DNA;    INV; 4436 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-39_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4436
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1392-1392 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..1182
FT                 /product="L1-39_AAe_1p"
FT                 /translation="MGRRENTFRIDFSSVPKKPDVAKVYKFCATVLGLQPC
FT                 DVLRIQNSRALGVTFVKVVDLTLAQRICEEHDNQHEISVDGKKYPLRITME
FT                 DGAVEVRLYDLSEDVSDEKITEFLENYGDVIEIREQRSGIDVDFPGVLTGV
FT                 RIVKMIVKQNIESWVTIDGELTAVGYFGQRNTCKHCRDYVHVGLTCVQNKK
FT                 LLVQKSYADAAKQMSHTSPKAAHITIAAGTNQGNKTKNQTASKANKTNPDS
FT                 VQAESMPPPKPIPQQKPQQPPPSIASEQNFPPLGGSVTATTGQQPSASCGM
FT                 FRRSASGTSDGNETDSSVGSAASKRQLRVRPPGKKPRVEENQENKREGGYE
FT                 AI"
FT   CDS           1185..4361
FT                 /product="L1-39_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAEFTSYNLATVNINNITNATKIEALRTFIRTLDLDI
FT                 IFLQEVENDQLSLPGFTVICNVDHARRGTAIALKDHIRFSHVEKSLDGRLI
FT                 ALRIQNTTLCNVYAPSGTAARAERERFFNGTIAYYLRFNTQHVILAGDFNC
FT                 VLRQGDSTSPNTSPALQATVQQLRLHDVWLKLYPNTPAPTYITHNATSRLD
FT                 RIYVSTGLCEHLRNAFTHVCAFTDHKALTARICLPHLGREQGRGFWSLRPH
FT                 LLQAENIEEFEIRWQFWTRQRRNFPSWLAWWLSYAKPKIKSFYRWKSREAF
FT                 NIFNAEHQRLYGQLRIAYDGYYQNPGMISTINRVKAQMLTLQRQFAQNFIR
FT                 INETFVAGESLSTFQVGDRRRKKTVITELQNEQGDQLRGSLEIEQHMFRYF
FT                 RNLYAREETRQDAEERFETERAIPANDEDNIAVMAEITIDELKSAIKTSQK
FT                 RKSPGSDGLPAEFYQRSFDVIYRELYFVMNEAMTNELPPEFADGTIVLIKK
FT                 RGGDGSARGYRPISLLNVDYKILSRVMKARLEKILQTHRVLSDAQKCANTE
FT                 RSIFQATLSLKDRVAQLIARKQRAKMISFDMDHAFDRVSHEFLHRTLLSLG
FT                 LNPDFVDWLSRVANASSSRLLINGRLSQPFRIERSVRQGDPMSMLLFVVYL
FT                 HPLLTRLERVCGGDLCVAYADDITVIVTATSTINRIFGLFSCYELVAGAKL
FT                 NMQKTIAIDVGFINGDPLTIPGLQTAETVKVLGVIFTNSVRQMVKLNWDSL
FT                 VSRIAQIIWMHSMRSLTLQQKVVLLNTFISSKVWYLASIVPPQCAHTAKLT
FT                 ASMGTFLFRGLPARIPMFQLARSRDNGGLKLHLPAIKCKALLINRYLKEID
FT                 STPFYHSQLAQNIAPTTEFPCLKLLSQQIPLLPHHIKQNPTSEQIHLFYLD
FT                 QIDLPRVERNEPGQNWKRIWRNISSKRLSSKQRSDLYLLVNEKIEHRRLMS
FT                 IMGRANDPNCQHCVVAIETLQHKFCECPRVAQAWSLVQRKITTILGGWQRL
FT                 TFNDLYRPALSNIVEVNRNKSLKIFIQYINYVNESVNNRIDVDGLDFMLNL
FT                 AD"
XX
SQ   Sequence 4436 BP; 1316 A; 1089 C; 992 G; 1039 T; 0 other;
     cagtgagcgc tcaacttccg agctgaatag acgcgttttt gctatcgttc cgtggaagtc        60
     gaacccaaac caaattataa atttcgtttt cggttatttt tctcgtcgct aagccatcgg       120
     tgcctatgtg cataccgcaa ctccgtcatg ggccggcggg agaatacatt tcgcatagac       180
     ttttcaagtg tgccgaagaa accagacgtt gctaaagtct acaaattttg tgcgacggtt       240
     ctgggtcttc aaccttgtga tgtgttgcga attcaaaaca gcagagctct cggtgttacg       300
     ttcgtgaagg ttgtcgatct aacgctggcg caacgtattt gcgaagaaca cgacaaccaa       360
     cacgaaatat ctgtcgatgg aaaaaagtat ccattgcgga taacaatgga ggatggagcg       420
     gtagaggtga gactctacga cttgtccgaa gatgtgtccg atgaaaaaat caccgaattt       480
     ctcgaaaact acggtgatgt gatcgagatt cgtgagcaac ggagcggaat cgatgtcgat       540
     ttcccaggtg tcttgaccgg cgttcgaatc gtcaagatga ttgtgaagca aaacattgaa       600
     tcgtgggtta cgattgacgg agagttgaca gccgttggct atttcgggca gcgtaacaca       660
     tgtaagcatt gccgggatta tgtgcatgta ggactaacct gcgtgcaaaa taagaaactg       720
     cttgtgcaaa agtcttatgc tgatgccgcc aagcagatga gccacaccag ccccaaggca       780
     gcccacatta cgatcgccgc tggtacaaac cagggcaaca aaacaaagaa ccaaaccgct       840
     tccaaagcga acaaaactaa ccccgactcc gtgcaggcag aatcaatgcc accgccgaaa       900
     ccaatcccgc aacaaaagcc acaacaacct ccaccatcaa tcgcctccga acaaaatttc       960
     cccccgttag gtgggtcagt gaccgccact acaggtcaac agccttctgc tagctgtgga      1020
     atgtttcgca gatctgctag tggaacatca gatggcaacg aaacagattc gtccgtcggc      1080
     tcagctgcct ccaagcgaca actccgagtc cgaccaccag gcaagaagcc ccgcgtggag      1140
     gagaaccaag aaaacaagcg agaaggaggg tacgaagcaa tctaatggct gagttcacca      1200
     gttacaatct cgctaccgta aatatcaaca acatcacgaa cgccacgaaa atcgaagcac      1260
     ttcggacctt catccgaaca ctcgatctcg atatcatttt tctacaagag gtagagaatg      1320
     atcagctttc tctccccgga ttcaccgtca tttgcaatgt agaccacgcc aggcggggaa      1380
     cagcaatcgc actcaaagac cacattcggt tctcccatgt agagaagagc ctagatggtc      1440
     gtctcatcgc tttgcggata cagaacacga cgctctgcaa tgtctatgca ccgtcgggca      1500
     cagctgcccg ggccgagcgg gaaaggtttt tcaacggtac gattgcctat tatcttcgct      1560
     tcaacacgca gcacgtcatc cttgcaggag actttaactg cgtgttacgt cagggggact      1620
     caacaagtcc caatacaagt ccagctctgc aggcgaccgt acaacagttg cgactacacg      1680
     atgtttggtt gaaactatat cccaacacac ctgcacccac atacatcaca cacaacgcga      1740
     catctaggct agatcgtata tatgtgagca cagggttatg cgaacatctt cggaatgcgt      1800
     tcacgcacgt gtgtgcattc accgatcaca aggcattaac agcgcgaatt tgtctccccc      1860
     accttggccg cgaacaagga cgcggcttct ggtcccttcg acctcacctt ttgcaagctg      1920
     aaaatatcga agagttcgaa attcgctggc agttttggac ccggcaaagg agaaattttc      1980
     ccagctggtt ggcatggtgg ctgtcgtacg cgaagccaaa aattaaatcg ttttatcgtt      2040
     ggaaatccag agaagcattc aacattttca acgccgaaca tcagcgcctt tacgggcaat      2100
     taagaatcgc atatgacggc tactaccaga atccaggcat gatatcgacc atcaaccgtg      2160
     taaaagcaca aatgctaacg ctacaacgtc aatttgcgca aaatttcatc aggatcaacg      2220
     aaacttttgt ggcgggagag agcttgtcca ccttccaggt gggcgacaga cgaaggaaaa      2280
     aaactgtgat aacagaatta cagaacgagc aaggagatca acttcgaggc tcgcttgaaa      2340
     ttgagcagca catgttccga tatttccgga acctttatgc gagagaagag acgagacaag      2400
     acgcggaaga aaggtttgaa actgagagag ctatcccagc aaacgacgaa gacaatattg      2460
     ctgtaatggc agagatcaca atcgacgaac tcaagagcgc aatcaaaacc tctcagaaac      2520
     ggaaatcacc cggctccgat ggtctaccgg ctgagttcta tcaacgatca ttcgacgtca      2580
     tatatcgtga actgtacttc gtaatgaatg aagcaatgac caacgagctt cccccggaat      2640
     ttgctgatgg gaccattgtg ctgatcaaaa agagaggcgg cgatgggtcc gcgagaggat      2700
     accgtccgat cagcctgcta aacgtagact acaaaattct cagtcgggtc atgaaagcac      2760
     gattggaaaa aatcctacag actcatcgag ttctgagcga cgcacaaaaa tgtgcaaata      2820
     ccgagcgttc catcttccaa gctactcttt cactgaagga tcgtgttgct cagctgatcg      2880
     cgcgaaagca aagagcgaaa atgatctcat tcgacatgga tcatgcattc gaccgcgtat      2940
     cccacgagtt cctgcaccga accctcctct ctctgggact caatccagat ttcgtcgact      3000
     ggctctctcg agtggcaaac gcgtcttcgt cacggcttct gattaatggg cgactatctc      3060
     aaccgtttcg aattgaacgc tccgtgcgtc aaggagaccc gatgtcgatg ctgctttttg      3120
     tggtttatct tcaccctctt ctcacacgat tggagcgggt atgtggtggt gatctttgcg      3180
     tcgcatacgc tgacgacatc actgttatag taacagcaac cagtacaatc aaccgtatat      3240
     ttggtctgtt ttcctgttac gaactcgtag ccggcgcaaa gttgaacatg caaaaaacaa      3300
     tagcgattga tgttggattc atcaatgggg atccactgac gatacctggt ctgcaaacag      3360
     cggagacagt taaagttttg ggtgttattt ttaccaactc cgtgagacag atggtgaaat      3420
     tgaactggga cagccttgtg tctagaatcg cacaaatcat ctggatgcat agtatgcgat      3480
     ccctcactct acaacagaag gtggtgctgt tgaatacgtt catctcatcg aaggtatggt      3540
     acctcgcgtc catagttcca ccacagtgcg cgcacacggc gaaactaaca gcatcgatgg      3600
     gaacgttctt gtttcgaggg ctgccagcac gaataccgat gtttcaacta gcgcgcagca      3660
     gagataatgg ggggcttaaa ttgcatcttc cagcaatcaa atgcaaagct cttctaatca      3720
     accgttatct aaaagaaatt gattccactc ccttctatca ctcccaactt gcccaaaaca      3780
     ttgcacctac gaccgaattt ccctgcttaa aacttttatc ccaacaaatt cctttgcttc      3840
     cccatcacat caagcaaaat cctaccagcg agcaaataca tcttttctac ttggatcaaa      3900
     ttgatttacc aagagtagaa cgaaatgaac caggacaaaa ctggaaaaga atctggagaa      3960
     atatctcatc aaaaagactt tcgtcgaagc agcgtagcga tctttacctt ctagtcaacg      4020
     agaagattga acatcgaaga ttgatgagca tcatgggacg agccaacgat ccaaactgtc      4080
     agcactgtgt ggtggccatc gagacactgc agcataaatt ttgtgagtgc ccacgagttg      4140
     ctcaggcatg gtctctcgtg caacggaaaa ttacgacgat tctgggaggg tggcaaaggc      4200
     taaccttcaa cgatctctat cgacctgctc ttagtaatat tgtagaagtg aaccgaaaca      4260
     aatctctaaa aatcttcatt caatacatca actatgttaa tgaatcagtt aataatagaa      4320
     tagatgtaga tggactagat ttcatgctga atctagcaga ttaatatttt atattatcaa      4380
     tatgttattt attatccaga actaaataaa caatatttta caaaaaaaaa aaaaaa          4436
//
ID   L1-3_CQ     repbase;    DNA;    INV; 4517 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4517
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 133-133 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1226
FT                 /product="L1-3_CQ_1p"
FT                 /translation="MSSTIRRVNTFKIDFASLPKKPRFEEIHHFVKTTLGI
FT                 PKEKIERLQVNHYFWCVFVKCVDLATAQQTVLQHNNKHAFEIDGKKYTIKI
FT                 QMEDGAVDVRLHDLPEEITNDQVKKFMSAYGEILSVRELVWEEKYELAGLK
FT                 TGVREVKMILKHQIKSFISIEGQHTYVTYIGQQTTCRHCGEYSHSGIPCTQ
FT                 NKKLLLQKVSVNERLKDAKKPTGKSSYADALMTKPSPRFVPAVLVEDNTGM
FT                 DCDGDNTHTDAENSEITTEGNGSSGGGSGFAAEPGIIIQDGGSSGGASGLA
FT                 DMLQKTTPILQETIIRDGDQLCVFKTPLTLPQDGDGAEESDGSSTSSASGK
FT                 RPRGRPPKKPKTST"
FT   CDS           1263..4457
FT                 /product="L1-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDYQSFNIGTLNINTISNQNKINALHNFTRTHDLDIL
FT                 FLQEVYSDELIIPGYTVICNVDHNRRGTAVALKHHIKYTNVEKSVDSRVIA
FT                 LRLQGSVTLVNVYAPSGSQQRTHRETFFNTTLAHFLRHQTNYTILAGDFNS
FT                 VINARDATGEGNHSLALKNTVQQTRLKDVWEALHGTRVEHTYITHNSASRI
FT                 DRVYVSSNLRDQLRTAYVSACSFTNHMSLTTRLCLPNQGRAHGMGFWSLRP
FT                 YVLTDETIEEFQQKWNYWTRQRRSYNSWMQWWLRLAKPKMKSFFRWKSKEA
FT                 FDDFTRKQQHLYAQLHQAYRAYLHNPDMLTSINRIKSQLLLLQKQFTQLFV
FT                 RINDTHVAGEPLSTFQLGERTRKRTIIESMENDAGASLESSDEIQEHVVNY
FT                 YRNLYAEGETRANPEFDCARVVPPDSISNHACMEEITTAEIYEAIKFSSSK
FT                 KSPGSDGLPKEFYVRTFDIIHRELNLLLNEALRGDIPEEFVNGVIVLVKKK
FT                 QAGNSITAYRPISLLNYDYKLLARILKARVDRVLREHDIISPVQKCSNGDR
FT                 NIYQATLSLKDRIAQLRSQRLSGKLVSFDLSSAFDRVDRGFLYHTMNSLGL
FT                 NPDLVNLLERIGERSTSRILINGHLSAAFPIQRSVRQGDPLAMHLFAIYLH
FT                 PLVARMERICDGPHDLVVAYADDISMITTNADKAEQVRGLFRDFEGCSGAM
FT                 LNLRKTTAIDVGHINDRNRLALPWIQSSESVKVLGVIYLNSLRQMINKNWD
FT                 TLITKMGQLIWLHRMRSLTLHQKVTLLNVFITSKMWYLSSVLAPYKVHIAK
FT                 ITSIMGSYLWHGHQARVPMHQLALPIEGGGLKLHLPYFKCRALLTNRHLQE
FT                 SNSTPFYKTFMQRIQNPPDLHRIPTDCPCLKVVCQEIAYLPEQLINNATAT
FT                 GVHTNLLQQVATPKVMSSDPTLDWKLIWRNINSKKLKSAERSWYFLLVNKK
FT                 TTHGELLHRMNIVNTPNCAHCGAQREDLQHKFSTCSRVAGAWRTLQRHLAA
FT                 AGMNGTTSFNSLAQPELRRLRRDVKHKVMKLFINYINFINQCNNQIDVDSL
FT                 NFHLENEI"
XX
SQ   Sequence 4517 BP; 1285 A; 1253 C; 1052 G; 927 T; 0 other;
     agtcagcgtt cacctctcag agagagcaga cgcatagtgc agtctttaga aaaatcgtgc        60
     gatccgaaag actgtaatcg gcttggtttt ttgctgtccc gtacctacgg gctaagtttt       120
     tttgcaaaaa gcaccgacct gctacatcta gcaagatgag ctcgacaata cgccgcgtaa       180
     acacgttcaa aatcgacttc gctagtcttc caaaaaaacc gcgttttgaa gaaatccatc       240
     acttcgtcaa gacgaccttg gggattccca aagaaaagat cgaacgactc caagtcaacc       300
     actacttctg gtgtgtgttt gtgaagtgtg tggatctcgc cacagcccag caaacagtcc       360
     tgcagcacaa caacaagcac gcgttcgaga ttgatgggaa gaagtacacc atcaaaatcc       420
     agatggaaga tggggccgtt gacgtccgcc tacacgacct acccgaagag atcaccaacg       480
     atcaagtcaa gaaattcatg tctgcgtatg gcgagatcct gtccgtgcgc gagctggtgt       540
     gggaggagaa atatgagctc gcaggactca agacgggcgt tcgcgaggtg aagatgatct       600
     tgaagcacca aatcaagtca ttcatctcga tcgagggcca acacacatac gtcacataca       660
     tcgggcaaca gaccacctgt cgtcactgcg gcgaatacag tcacagtggc atcccctgta       720
     cgcagaacaa gaagctgttg ttgcagaagg tgagcgtcaa cgagcgcctc aaagatgcca       780
     agaagccaac cggcaagtcg tcctacgctg atgccctcat gaccaaacct tcaccccgtt       840
     tcgtgccggc agttctcgtt gaggacaaca ccggcatgga ctgtgatggc gacaacacac       900
     acaccgatgc agagaattcc gagataacca ccgaagggaa tggtagcagt ggcggaggca       960
     gcggttttgc tgcggagccc gggatcatca ttcaagacgg cgggagcagc ggcggcgcca      1020
     gcggcctcgc tgatatgctc cagaagacga caccgatcct gcaggagacc ataatccgcg      1080
     acggcgacca actatgcgtg ttcaagacac cactcacact tccacaagac ggtgacggcg      1140
     cagaggaatc cgatggatct tctacgtcat ctgcatcggg taagcgtccg agaggccgtc      1200
     ccccgaagaa accaaagacc agcacgtaaa caccaacaca cccctaattt ccccttaaca      1260
     caatggatta tcaaagcttt aatattggta cacttaacat caacactatc tccaatcaaa      1320
     acaaaattaa cgccctacac aacttcacac gcacacacga tctcgacata ctcttcctgc      1380
     aagaagtgta cagcgacgag cttattatcc ctgggtacac agtcatatgc aatgtcgatc      1440
     acaatcggag gggcacagca gtggctctca aacaccacat caagtacacg aacgtcgaaa      1500
     agagcgtgga ctccagagta atcgccctac gcctgcaagg gtcggttaca ctggtgaatg      1560
     tgtacgcgcc ctctggaagc caacaacgta cacacaggga aaccttcttt aacaccacac      1620
     tagctcactt cttgcgacac caaaccaact acactatctt agccggggac tttaactcgg      1680
     tgatcaacgc aagagacgct acgggagagg gaaaccacag ccttgctcta aaaaacactg      1740
     tccaacagac tcgactgaag gatgtatggg aagcactaca tgggactcgg gtcgaacaca      1800
     cttacataac acacaactcg gcctctcgca ttgatcgtgt gtacgtgagc tcgaacctgc      1860
     gggatcagct gcgtacagcc tacgtgagtg cctgctcatt cacaaaccac atgtccctga      1920
     caacccgcct gtgcttaccg aaccaaggtc gagcgcatgg tatgggtttc tggtcactcc      1980
     ggccgtacgt cttgacagac gaaacgatcg aggagtttca acaaaaatgg aactattgga      2040
     cgcgacaacg ccgtagctac aactcctgga tgcagtggtg gctgcgcctc gcgaaaccaa      2100
     aaatgaagtc cttctttaga tggaagtcta aggaggcgtt tgatgacttc actcgaaaac      2160
     agcagcatct ctacgcgcag cttcaccagg cgtatcgcgc gtacctgcac aatccggaca      2220
     tgctgacctc catcaaccgc atcaagtccc aattgcttct actacagaag cagttcactc      2280
     agctgtttgt gcgtatcaac gatactcacg tagctggcga gccgttgtca accttccagc      2340
     ttggagagag aacgaggaaa cgcacgatca tcgagagcat ggagaacgac gctggcgcct      2400
     ctctggagag ttcagatgag atccaagagc acgtggtcaa ctactaccga aacctgtacg      2460
     cagaaggaga gacgcgagca aatcccgaat tcgactgcgc tagggtggtt ccaccagaca      2520
     gcatctctaa tcatgcctgc atggaggaaa tcacaactgc ggaaatttac gaggcgatca      2580
     aattcagctc gtcgaagaaa tccccagggt ccgacggtct tcccaaagag ttctacgtac      2640
     gcacattcga catcattcac cgagagctga atctgctgct gaacgaggcg cttcgtggtg      2700
     acatccccga agagttcgtg aacggtgtga tcgtcctggt gaagaaaaaa caagctggaa      2760
     actccatcac tgcataccgc cctatatcgc tgctcaacta cgactacaag ttgctggcca      2820
     gaatcctgaa agcgagagtc gatcgtgttt tgcgcgaaca cgacataatc agccctgtcc      2880
     agaaatgctc gaacggagac cgaaacatct accaagcaac tctctcgctc aaagaccgca      2940
     tcgcacaact acgcagccaa cgactctctg ggaagttggt atcgttcgac ctctccagtg      3000
     ccttcgaccg tgttgataga ggtttcctct atcacacaat gaactcgctt ggtctcaacc      3060
     ccgatttggt gaatctgcta gagaggatcg gagagcgctc cacctctcgg attctcatca      3120
     acggacacct ctctgctgcc tttcctatcc agagatcggt tagacagggt gaccctctcg      3180
     caatgcactt gtttgctatc tacctgcatc cactggtagc gagaatggag cgtatctgtg      3240
     acggacctca cgatcttgtc gtcgcctacg ccgacgacat cagcatgatc accaccaacg      3300
     ctgacaaagc tgagcaggtt aggggtctct ttcgtgactt cgaaggatgc tccggtgcga      3360
     tgctcaacct acggaagacg acggccatcg atgtgggtca cataaacgat cgaaacagac      3420
     ttgcgctgcc gtggatacaa tcgagcgaat cggttaaggt cctcggagtg atctacctga      3480
     actctctacg ccagatgatc aacaagaact gggacacctt gatcacaaaa atgggacagc      3540
     tgatctggct tcacaggatg cgcagtttaa cactgcatca aaaagtcacg ctactgaacg      3600
     ttttcatcac atcgaagatg tggtatctct cctcggtact tgcaccctac aaagttcaca      3660
     tcgccaagat tacctccatt atgggcagct acctgtggca cggccaccag gcaagggtgc      3720
     caatgcatca actggcgctc cccatcgagg gaggcggtct caagctccac ttgccttact      3780
     tcaaatgtcg agcactgctg accaacagac acctacagga gagcaacagc acaccgttct      3840
     acaagacctt catgcagcgc atccagaacc ctccggacct gcacaggata ccaactgact      3900
     gcccatgtct caaggtagtc tgccaggaga ttgcctacct gccggaacag ctgatcaaca      3960
     acgccactgc gacgggtgtt cacacgaacc tccttcagca agtggcaaca ccaaaagtca      4020
     tgtcgagcga tcctaccctg gactggaagc tgatatggcg caacatcaac tccaagaaat      4080
     taaaatcagc tgagagaagc tggtacttcc tactggtgaa caagaaaacc actcacgggg      4140
     agctgctcca tcggatgaac atcgtcaaca caccgaactg cgcacactgt ggtgcgcaac      4200
     gagaagacct acaacacaaa ttcagcacct gttccagagt ggccggtgcg tggagaacgc      4260
     tccaacgcca ccttgcagcg gcggggatga atggcaccac cagcttcaac agccttgctc      4320
     aaccagaact acgaagatta cgacgagatg tgaaacacaa agtgatgaaa cttttcatca      4380
     attacatcaa ctttattaat caatgtaata atcagattga tgtagattcc cttaattttc      4440
     acttggaaaa tgaaatctag aattcatcat gtaattagct tttacaaatg actgaataaa      4500
     tattttataa aaaaaaa                                                     4517
//
ID   L1-40_AAe   repbase;    DNA;    INV; 4640 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-40_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4640
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1393-1393 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           131..1249
FT                 /product="L1-40_AAe_1p"
FT                 /translation="MAVSPYHLTSNGPRINTIVIDLATVPTRKVTMDLIVR
FT                 FINHNLKIQFSSVQSLQHNTGKSLVFLECQSEEQALAVADKNDGKHEITIE
FT                 NIKYAVNVYMEDGATTVRIHDISPQSENSVIEQALEQYGDVIWLKEETWTE
FT                 PAILKGIKSGVRSVRIRLHSAIPSYINIRGEVTLVTYKNQQQTCRHCNKPV
FT                 HWGRKCIEANYMELQLQTGLTGNISDRLRASGVDYAGALKQVAQEPVTSVG
FT                 TGSANKQVSANFTSLNQLLRVEQNANTSKSVDPVIHASNSEIPHTKKGNSV
FT                 TIHRTTDPSVGNEMNTESVSSATKSPSFLAEGSQLGIPTNNTFMALISDDE
FT                 SLHNDGTRSRSTSPSHQKVQKRSRPRKTSK"
FT   CDS           1261..4452
FT                 /product="L1-40_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNALSYNIGSINMNGISNKNKIDALRAFVHLMELDIV
FT                 MLQEVPEQIDFNGFDSFSNIDHKKRGTEIMVKSHIKTSGIQRSIDSRIISL
FT                 QIDQHVTICNIYAPSGYALRAEREKFFTDTIPHYINHGTGELILGGDFNAV
FT                 INKKDANHTSNHSSSLKFLVESLKLSDAWEHVHKTVVDYTFVRNGSGARLD
FT                 RFYVTEGIKQNVVDIKSNVCCFSDHKSVILKVKLPNLGKPYRKQFWRFNDT
FT                 ILTEEVLSEFRTKWLWWVRQRRYYDSWFSWWNELAKKKIVSFFKWKNSIAR
FT                 KRNHDTMEFYYAALNLLHREYVDKPALISEINLVKGKMLALQKQISNNFYS
FT                 HSKTMIAGEDASIFHVGEQIKNRGKAFIKSLDIAENTERDADKIEEEVVNY
FT                 FQKLYSASDVTSDNSFNPQKTVDVNLPANNDLMSPVTEQELLLTIKTSQSR
FT                 KSPGIDGLSKQFYLKCWNIIKTELVAVVNDVLNGKMSKKFVEGIIILIHKK
FT                 GSRSSIENYRPITLLNFDYKLVARILKTRLSKFSPLLLSKAQKCANAPNTI
FT                 FDTICGIRDKILEVNCRRRTCILVSFDFEKAFDRVSHTFLEKTLDRMGINN
FT                 RFIDFLKQIHANSYSRIMVNGRFSNQIKIGRSVRQGDPLSMLLFCLYLEPL
FT                 IQKLQRCCNAEFDMLYSYADDISLILNDFTKLEEVKRIFENFGKVSGAKIN
FT                 FLKTKAMCIGTNNTSNVPDWIQLAESVKILGIYYHNNSRTMMNLNWDNVIQ
FT                 KLKFSTWNNQFRNLNLIQKVIFLNTFASSRIWYVSSVVPLDKKRNAKIRNI
FT                 YGNFLWYRATLRVAFDQLCLPRKRGGLGLIAPNLKSNALLLNRFLRLESES
FT                 PFLHNLTNQIDNPPNIKDVPLNSPFLKTVYLELPYIPENIRQNSTANALYN
FT                 HYIARLPTPHIEQKYPQCTWQRIWKNVFNKKIISENQVSWYLFVNEKIPCG
FT                 KQQFRFGRTASERCVFCPQEIEDWKHRYANCEKVRKCWWYSLTQIKLINRN
FT                 RTRNLSFDDFKFPVLSRLNMLERTEASKIFIEYLNYIKSRSREELDLSELV
FT                 FNLNCKT"
XX
SQ   Sequence 4640 BP; 1611 A; 827 C; 931 G; 1270 T; 1 other;
     cagttacgct ttggcagccg gcgagatcgc acgcttttgc aattgttcgg agtttaaaag        60
     tgaagctatt attttgccag tcaatacaga ctgtgctcat caacacaaca caatacaaca       120
     cgtgagaaca atggccgtat cgccatatca cctcacctcc aatggaccac gaatcaatac       180
     tattgtcatc gatttggcta cagtgcccac gaggaaggtc acgatggact tgattgtacg       240
     tttcatcaat cacaatttga aaatacaatt ttcgtcagtt caatcacttc aacacaatac       300
     ggggaaatcc ttggtatttc tggaatgcca atctgaagag caagcgttgg cagttgcgga       360
     caaaaacgat ggaaaacacg agatcacgat cgagaacatc aagtatgcag taaatgtata       420
     catggaggat ggagcaacaa ccgtaaggat tcatgatatc tcaccgcaat cggaaaattc       480
     ggttattgaa caagcgttgg agcagtacgg agacgtaatt tggctgaagg aggaaacatg       540
     gactgaacca gctattttga agggaatcaa gagtggagtc cgatcggttc gtatccggtt       600
     gcattctgcc ataccgtcgt acatcaacat ccggggtgaa gtcacgttag tcacgtacaa       660
     gaaccaacaa cagacatgca ggcattgcaa caaaccggtg cactggggac gaaagtgcat       720
     tgaggccaac tacatggagt tacaactgca gaccgggttg actggaaata tcagcgatag       780
     attgagagct tctggcgtag attacgcagg ggcgttaaag caagtggctc aagaacccgt       840
     aacaagcgta ggaacaggta gcgctaacaa acaggtaagt gccaatttca caagtctcaa       900
     tcaactgctc cgagtagagc agaatgctaa tacgagcaag tcggttgatc cagttattca       960
     cgcttcaaac tcagaaattc ctcacacgaa aaaaggcaat tccgtaacta ttcatcgcac      1020
     cacggatcca tctgtgggta atgagatgaa cacggagagc gttagctcag ccaccaaatc      1080
     accatctttc ttagcagaag gctctcagtt gggaattccg accaacaaca cgtttatggc      1140
     actcatttca gacgacgagt cattgcataa tgacggtact cggagcagaa gcacctctcc      1200
     ctctcaccaa aaagttcaga aacgtagtag acccagaaaa acctcgaagt aatttcgaaa      1260
     atgaacgctc tctcgtataa cattggttcc attaacatga acgggatctc caacaagaac      1320
     aagatcgatg ctctcagagc attcgttcac ttaatggaac tagatatagt tatgcttcag      1380
     gaggttcctg agcaaattga ttttaatggc tttgattcct tttcaaatat cgatcataag      1440
     aagcggggta cagagataat ggttaagtcg cacataaaaa catcagggat tcaacgcagt      1500
     attgattctc gtatcatcag tcttcagata gatcaacatg taaccatttg caacatatat      1560
     gcaccatcag ggtatgcttt gagggcagaa agggagaagt ttttcacgga tacgattcca      1620
     cactatatca atcatggtac tggcgaactg attttggggg gcgattttaa tgctgttatc      1680
     aacaagaaag atgctaatca cacttctaat cacagtagtt ctttgaaatt tctcgtagaa      1740
     tctttgaaac tgtcggatgc atgggagcac gtacataaaa cggtagtaga ttacactttt      1800
     gttagaaacg gatccggagc aaggttggac agattttatg tgacagaggg aattaaacag      1860
     aacgtagtag acattaaatc taatgtgtgc tgcttctctg atcataaatc agtgattttg      1920
     aaggtgaaat taccaaattt aggaaagcct tacagaaaac aattctggcg tttcaacgac      1980
     acaattttaa cggaggaagt tctgtcagaa tttagaacta aatggttgtg gtgggttaga      2040
     cagaggaggt attatgattc ttggttctca tggtggaacg agttagcgaa aaagaaaatt      2100
     gtttcgtttt tcaaatggaa aaatagcatt gctaggaaac gaaatcatga caccatggaa      2160
     ttttattatg cagctttgaa cctgttgcac agggaatatg ttgataaacc agctttgatt      2220
     agtgagataa atcttgtcaa aggtaaaatg ctagcacttc agaagcaaat atcaaacaat      2280
     ttttactccc actcaaaaac aatgatcgcg ggggaagatg cttcaatatt ccatgtcggt      2340
     gagcaaatca agaacagggg gaaggcgttt atcaaatcac tggatattgc agagaacacg      2400
     gaaagagatg cagataaaat agaagaagaa gtagtgaatt attttcaaaa actttactca      2460
     gcgtcagatg ttacatctga taatagtttt aatcctcaaa aaacagttga tgtcaatcta      2520
     cctgccaaca atgatttgat gagccccgtg accgaacaag agttgttgtt gacaatcaaa      2580
     accagtcaat ccagaaaatc ccccggaatt gatggtctgt ccaagcagtt ttacttgaaa      2640
     tgttggaata ttattaaaac agagttagtt gcagttgtta atgatgtact caatgggaaa      2700
     atgtcaaaaa aatttgttga aggtatcata atcttaatac ataaaaaagg atccaggagt      2760
     agtattgaaa attaccgacc aatcacattg ttaaattttg attacaaact tgttgcaaga      2820
     attctcaaaa ctcgtctaag caaatttagt ccgttgctct tgtctaaagc acaaaaatgt      2880
     gctaatgcgc caaacaccat atttgataca atttgtggca tcagggataa gatactcgaa      2940
     gtaaattgca gaagaagaac ttgcattctc gtatcatttg atttcgagaa agcatttgat      3000
     agggtcagtc acaccttttt agaaaaaact ttggacagaa tgggaattaa taacagattc      3060
     atcgattttt taaaacagat tcatgctaat tcatattcca gaattatggt caatggtcgt      3120
     ttttctaacc agataaaaat tggaagatca gtcaggcagg gcgaccctct ttcaatgtta      3180
     cttttttgtt tatatctgga acctctaata caaaagttac agagatgttg caatgctgag      3240
     tttgatatgt tgtatagtta tgcggatgat attagtttga ttttgaatga tttcactaaa      3300
     cttgaggagg tcaaacgtat ttttgaaaat tttggaaaag tctcgggggc aaaaattaac      3360
     ttcttgaaaa ctaaagctat gtgtatagga acaaataata cgtcaaacgt gccggattgg      3420
     attcagcttg ccgagagtgt taagatctta ggcatttatt atcacaacaa cagcagaaca      3480
     atgatgaatt tgaattggga taacgtaata caaaagttaa aattttcaac atggaataac      3540
     cagtttcgga acttaaattt gatacagaaa gttatctttt taaatacatt tgcttcatca      3600
     agaatttggt atgtttcatc ggtggtgccg ttggacaaaa aacggaatgc taagatcagg      3660
     aacatttatg gtaactttct ttggtaccgt gctacactaa gagtcgcttt tgatcaatta      3720
     tgcttgccta gaaaacgtgg aggtttgggt ttgatagcac ccaacctcaa aagcaatgca      3780
     cttttattaa atagattttt gcgcttagag tctgaatcac catttctcca caacttaact      3840
     aatcaaatag ataatcctcc gaacataaaa gatgttcccc taaattcacc ttttctcaaa      3900
     actgtatatc tggagcttcc atacattcct gaaaatatca gacaaaactc aacagctaac      3960
     gctttgtata atcattatat agctagacta ccaacaccac atatcgaaca aaaatatcca      4020
     cagtgcacgt ggcaacggat atggaagaat gttttcaaca aaaaaatcat ttcggaaaac      4080
     caagtatcat ggtatctttt tgtaaatgaa aaaatcccgt gtggtaaaca acaatttcgt      4140
     ttcggtagaa ctgcaagtga aaggtgtgtg ttttgtcctc aagagattga agactggaag      4200
     cacagatatg caaactgcga aaaagtgcgg aaatgttggt ggtattcctt aacccagata      4260
     aaattgataa ataggaatcg aactcgaaat ttgagtttcg acgattttaa atttcctgta      4320
     ttgagtcgcc ttaatatgct tgaaagaacg gaagcttcaa aaatatttat tgaatatttg      4380
     aattacataa aaagcagaag cagagaagaa ctggatttgt ccgaacttgt atttaatttg      4440
     aactgtaaga catgaaattg gcactttaac aaaaataaaa cgagaaggga taaactmact      4500
     aacacataat taacatcaag tagcaaccaa tgtcaaacaa aatagaaaaa aaaaaacaca      4560
     aaaaacatac atacttattg tattacaata ttaaacggaa ataaaacaag tttttagaat      4620
     ttttagaaaa aaaaaaaaaa                                                  4640
//
ID   L1-41_AAe   repbase;    DNA;    INV; 4632 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-41_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4632
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1394-1394 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           142..1209
FT                 /product="L1-41_AAe_1p"
FT                 /translation="MPDYRKNSMIIDFSVVPTRPAISEIHKFVFESLKITM
FT                 ASIKSIQLSTTKSYVYLEMESSALAEQLVAENNRKFSIKIDGGEYAIPMFI
FT                 ADGAVEVKVCDLPPHMPNSIIAKHLAAYGEVMSIKDDVWREYFPGLPNGNR
FT                 TVRMRIQKAIPSYLSIETETAYIRYKNQVPTCRYCSRNLHVGTKCSDVRKA
FT                 LSKSVNERLSLASIVQGVNPILPESTQTANTTSPENTSSVSGGNNSQRLSS
FT                 MDPPLTTDAMTVETEIANLVNADPQSSKAVVQSFDISDSEMENSNRRKQRE
FT                 LRGATNSTERSTASTVGSMDTHDTMGDQQENWREIRSKRVGSPRLAETSKI
FT                 EAKRQSRSRHRYK"
FT   CDS           1387..4578
FT                 /product="L1-41_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDLRSYKIATININAITNATKTEALQLFIRTAELDVI
FT                 FLQEVANASLQLYGFQLFFNIDERKRGTAIAVRRGFRCHDVQRSLDARVIS
FT                 VRIGQVTFVNIYAPSGTNQRRNRELFFNSTVAHYIYNSTDAVVVGGDLNSV
FT                 INRKDAIGSNSHSPMFQRLIQAGNLIDSWEIPNGSNVEYSLVRHDSSSRID
FT                 RIYVGKDMRTWLRTSQFVPLSFTDHKAFVIRMVLPDMGVNTGRGIWRFKPQ
FT                 ILDDPAVMQEFSMKWSYWTRARRNYPTWMNWWVSYAKPKLVSFFKWKTSLF
FT                 NKDFRDTMELYYTLLKSAYDDLFGNPEQLQTVNKIKAQMLLHQRKFSANQH
FT                 SQNECFIGGENTTIYHVGQSKKRKSETWLKELEDNGRTIVAHADIKEHVTK
FT                 YFEELYTDAELIGSQQLDFHPIRKIPDNNIWNSKLTDRATVEEVREAIKNS
FT                 ASKKSPGIDGLPKEFYSKTWHIISSEITAVINDAISGTIPKQFMDGVIVLV
FT                 RKKQSRPTVNGFRPISLLNVDYKIVARILKQRMVNILPLVLSSNQKCSNGK
FT                 KNIFGATARIIDKLCELEETRGSSLLVSFDMDHAFDRVDQNFLKRTMTEMQ
FT                 FNPNFTQLIGNIMANSFSKVLINGSLSREIQIRRSVRQGDPLSMFLFVIYL
FT                 QPLLDKITQLFPNAIMNAYADDVSMFVQNERDLIAIMDIFSDFANEAGAIL
FT                 NTAKTVALMIGNVNLTTDSDWLTIENEVKILGIQFSSNFTRTVELNWSSVL
FT                 LKFQRALWMNNVRNLNLIQKVILLNTYICSKMWYMASVLPLPNKFAGKFIS
FT                 RIGSFLWYGQNSARIPFETLTLPKNRGGLNLHSPAIKSKALLVNRMISLAE
FT                 HLPFFNRFYALNANPPFVNGVPRKFVHIRITIQESAFLPEAMMESLSSASL
FT                 HECFVQRLKDAKMIRNHPQRDWKSILQNLHSKIINSDRRSIWYRIMHGKII
FT                 TNSLLFNQQQRPDPYCEQCNQEIDDIEHRIFKCISIREIWHYQRQLLIREN
FT                 RRFRDFQLNDWLYPSLKQFSRHQKLSCIKIIATFLSFVIQTPKEEHSIANF
FT                 KFYKMYN"
XX
SQ   Sequence 4632 BP; 1484 A; 1012 C; 936 G; 1200 T; 0 other;
     cagttgacac tcagcattcg tgcgcgatag ttgtgtaaaa tattcgtctg ctgagagaaa        60
     cgtttttcac cattactagc ggacttggtc cggccggttt ttttttctaa tcccggaaat       120
     atcaaagcta gacaagacac gatgccagat tatcggaaaa attcgatgat catcgatttc       180
     agtgtggttc caactagacc agctatttct gaaattcaca agttcgtctt cgagtccctc       240
     aaaataacaa tggcctccat caaaagcatc caactgagca caacgaagtc gtatgtgtat       300
     ctcgaaatgg agtcatcggc tctggcagag caactagtcg ccgagaacaa ccgaaaattt       360
     tccatcaaaa tcgatggtgg cgagtacgcg atccctatgt ttatcgcaga tggtgcagtg       420
     gaagtcaaag tttgcgacct tccacctcac atgccgaact ccatcattgc taaacatcta       480
     gctgcttacg gtgaagtcat gtccatcaaa gacgatgtgt ggcgcgaata ttttccaggc       540
     ctgccaaatg gaaatcgcac cgtccgaatg cgaatacaga aagcaatacc atcatatctg       600
     tccatcgaaa ccgagacggc gtatatccgc tacaagaacc aggtacccac ctgcaggtat       660
     tgttctcgca accttcacgt tggcacgaaa tgctcggacg taaggaaggc tctctccaag       720
     agcgtcaatg agagattgtc tctggccagt attgttcagg gagtgaatcc aatattgccc       780
     gaatccacac aaacagcaaa cactacatca cctgaaaaca catcatctgt gtccggaggc       840
     aataattctc aacgtttgtc ttcgatggat cctccgttga ctacagatgc aatgaccgtt       900
     gaaactgaaa tcgcaaatct tgtaaatgct gatccacaat cgtcgaaagc agttgtgcag       960
     tccttcgaca tctcggacag cgagatggaa aacagcaatc gacgaaagca gcgtgagctg      1020
     cgcggtgcca caaattcaac tgagagaagt actgccagta ctgttggtag tatggacact      1080
     cacgacacta tgggtgacca acaggaaaat tggcgagaaa taagatcgaa acgagtgggt      1140
     tctccgagat tagcagaaac atcgaaaatt gaagccaaac gacaatctcg ttccagacac      1200
     cgatacaagt aaagcttaac gttttcatag gtaagagcat gtatatgttc agccgaagca      1260
     ctcacagatt ctaccaatct aaggcgttat ttctccattc ttctgtatgc caccgagtac      1320
     tgatgccatc ccgttcttcg tgctgtaaac cgcgtcaatc aagctttcca ttcatccgtt      1380
     tcttctatgg atttaaggag ttataagata gcaaccatca atataaatgc tataactaat      1440
     gctacgaaga ccgaagccct acaactattc atccgtactg cagagcttga cgtgatattt      1500
     cttcaggaag ttgccaatgc gagtctacaa ctctacggtt tccagctttt cttcaatatc      1560
     gatgagagga aaagaggtac agcaatagca gtcagaagag ggtttcgatg ccacgatgtt      1620
     caacgaagcc tagatgcacg agtaatttca gttagaattg gccaagtaac gttcgtcaac      1680
     atatacgctc cctctggtac aaaccaacgt agaaaccgtg agttgttctt caacagtacc      1740
     gttgcgcact atatctacaa ttcgacggac gcagttgtag ttggaggcga tctaaattcc      1800
     gtgattaata gaaaggatgc tataggatcc aactcacaca gtccaatgtt ccaacgactg      1860
     atacaagccg gtaatctgat cgatagttgg gagataccga atggatcaaa cgtagagtat      1920
     tcactcgtaa ggcatgattc atcatcaaga atagatagaa tatacgtagg taaggatatg      1980
     cgcacttggc tacgtaccag tcagtttgta cccctttctt ttactgacca caaagctttt      2040
     gttatacgca tggtattacc tgatatggga gtaaacacag gtcgtggaat ttggcgtttt      2100
     aaaccacaga ttctcgatga cccagcggtt atgcaagaat tttccatgaa atggtcgtat      2160
     tggacgagag caagaagaaa ttatcctaca tggatgaatt ggtgggtctc ttacgccaaa      2220
     cccaaactcg tctccttctt caaatggaaa acttcgctct tcaacaagga ttttcgtgac      2280
     accatggagc tctactatac ccttttgaaa tctgcatatg atgacctatt tggcaatccc      2340
     gagcagttac aaactgtaaa caaaatcaag gctcaaatgc tgctccatca acgaaaattc      2400
     tcggcgaatc aacactccca aaacgaatgt ttcattggtg gcgaaaacac tacgatatat      2460
     catgttggtc aatcgaaaaa gcggaaatct gaaacgtggt tgaaagaact ggaagacaac      2520
     ggccggacta tagttgcaca tgcggatatt aaggaacacg tgaccaaata tttcgaagag      2580
     ttgtacacgg acgcagaact aatcggtagc caacaactag attttcatcc aatacggaaa      2640
     ataccggaca acaacatttg gaacagtaag ctgacggaca gagcaactgt cgaagaagta      2700
     cgggaagcca taaaaaatag cgcatcgaag aagtcacctg gcatcgacgg actccccaaa      2760
     gagttttatt cgaaaacctg gcacatcatc tcctcagaaa tcacggcagt gataaatgat      2820
     gcgataagtg gaacgatacc aaagcaattc atggacggtg taatagttct cgttagaaaa      2880
     aaacaaagcc gaccaaccgt gaatggattt cgaccaattt cgctgttgaa tgtcgattat      2940
     aaaattgtag ctagaattct caagcaacga atggtaaata tccttcctct cgtgctatcc      3000
     agcaatcaaa aatgctcgaa cggcaagaaa aacatcttcg gtgcaacggc tagaataatc      3060
     gacaaactct gtgaactaga agaaacccgt ggtagttcat tattggtttc tttcgatatg      3120
     gaccacgcct ttgacagagt ggatcaaaac tttttgaagc gaaccatgac agagatgcaa      3180
     tttaatccaa atttcacaca gcttattggc aacattatgg ccaatagttt ctcaaaggta      3240
     cttatcaacg gttccttatc ccgggaaata cagattcggc gttcagttag acaaggtgat      3300
     cctctgtcaa tgtttttatt tgtgatctac ctccagccgc ttctggacaa aatcacccaa      3360
     ttatttccca acgcaatcat gaatgcatac gccgacgatg tatcaatgtt tgtgcaaaat      3420
     gagagagatt tgattgctat catggatatt ttttctgact ttgcaaatga agctggagcg      3480
     attttgaaca ctgcgaaaac cgttgcactt atgataggca atgtcaacct tacaacagac      3540
     agtgattggt tgacgattga aaacgaggtt aagatcctag gaatacagtt ttcgagcaac      3600
     tttactagga cagttgagct aaattggagc tccgtactac tcaagtttca acgagcactg      3660
     tggatgaata acgtgcgaaa tttgaatctg attcaaaaag tcatactgct aaacacatac      3720
     atctgctcca aaatgtggta catggcttca gttcttccac tgccaaacaa atttgctggg      3780
     aaattcatat caagaatcgg atcttttcta tggtatggtc aaaactcagc aagaattcct      3840
     ttcgaaacat taacgcttcc gaaaaacaga ggagggctaa atctgcactc accggcgatt      3900
     aaatccaaag cattgcttgt caatcgcatg ataagtctgg cagaacacct tccattcttc      3960
     aatcggttct atgcattaaa cgccaatcct cctttcgtga atggggttcc tagaaagttt      4020
     gtgcatataa ggatcaccat acaggaatcc gcattcttgc ctgaagcaat gatggagtcc      4080
     ctttcctcag catcgttaca tgagtgcttt gtgcagagac tgaaagatgc gaaaatgatc      4140
     agaaatcatc ctcaacgaga ttggaaatct attctgcaaa atttgcattc taaaatcatc      4200
     aactctgatc gacgttcgat atggtatcgg ataatgcatg gaaaaattat caccaatagt      4260
     ttgctcttca accaacaaca gcgaccggac ccatactgtg aacagtgcaa ccaggaaata      4320
     gatgatattg agcacaggat cttcaaatgt atatctataa gggaaatatg gcactatcaa      4380
     cgacagctac tcattagaga aaacaggaga tttcgagatt ttcaactaaa tgattggctt      4440
     tacccatcac taaagcagtt ttcgagacac caaaaactta gttgtattaa aataatagct      4500
     actttccttt cttttgtaat tcaaacgcct aaagaggaac acagtattgc aaactttaaa      4560
     ttttataaaa tgtacaacta atttagaatt ttttgacaat aaaacaagga catcgtaacc      4620
     taaaaaaaaa aa                                                          4632
//
ID   L1-42_AAe   repbase;    DNA;    INV; 4662 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-42_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4662
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1395-1395 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..1179
FT                 /product="L1-42_AAe_1p"
FT                 /translation="MPRRENTFRVDYSQFPKQLSHDELHKFIGKELGLTRE
FT                 HVLLLQPSRRLGCTFVEVNSLELAESIVQQHDNKHEFVYDGKAYKLRIMME
FT                 DGAVEVRLFDLSNDVSNEHIAEFLSDFGDVLNIRDLLWDERSPFGGVKTGV
FT                 RIARMVVKKNIPSLVTIRGEDTAVGYKGQRQTCLHCLEFVHVGIPCVQNKK
FT                 LLVQKLTADQSYANVAKQPALLKKPAQPNTLLSNRSQSQTQPNLSRQPSSK
FT                 PNEARAPKQVNSMAPPATPSLHKSPATQPIHQLTPISGPIGVISANRKTDG
FT                 NETDNSQTSYASTSSIRTRSRRSPPGKKMRHSNSNSNSEQERGSGDDMHL"
FT   CDS           1249..4584
FT                 /product="L1-42_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MLSVRLFAPSIWISSFCRRWKMISLPCPASTLSAMSI
FT                 MRGEELRSPSKSTSDSPTSKKAWTEDWLPYECTIQHCVTCMPRLDLFSAPS
FT                 GNVSTTTLSPARAAGGRGGAGPGRRRRPGRAPAPRAPAGRAPPRAPRRPPP
FT                 PPAGGRRAPPRPRGRRRPAARGGAPGRGRAGRGYYLRHRTDHIILGGDFNC
FT                 VIRLCDATGSNSSPALQSAIQQLRLLDVWQQLRSRESGYTYITHNSSSRLD
FT                 RFYVSANLREHLRATSVHVCCFSDHKAVTARLCLPLPDRAPGRGYWSLRPH
FT                 LLTTENIAELQISWQYWTRQRRYYPSWIEWWLSYAKPKFKSFFRWKSKLAF
FT                 DAFHREQQRLYERLSQAYDGYHNNRNMITNINRIKAELLSHQRRFSEMFIR
FT                 INETLLAGEPLSIYQIGERTRRKTTIDQLCDAHGAAIDDSDAIRNHMVEYF
FT                 SNLYARENVDEEDEGRMFQCERIIPERDAVNEACMNDITTADILSAIRTSA
FT                 SKKSPGPDGLPKEFYLRTFDVIHRELNLVLNEALRSNFPTQFVDGVIVLVK
FT                 KRCAGNTARSYRPISLINFDYKILARILKRRIENVLRSHNILTAAQKCSNP
FT                 EKNIFQATLAIKDRIAQLKANGRTAKLIGFDLDHAFDRVDHRFLFNTMHAL
FT                 GFDTSMVNLLSRIAASASSRLLINGFLSSPFPIERSVRQGDPLSMHLFVLY
FT                 LHPLLRRLEEACGGELIVAYADDISAIVTSVDQINAMRDLFRRFGRLSGAR
FT                 LNEAKTTAINVGLINDPLNVPWLCTENTIKILGIVFTNSVVEMVHLNWDML
FT                 VTNFSRQVWLHSQRGLSLHQKVTLLNTFVSSKMWYIAAHLAPTSAHVAKVT
FT                 ATMRRFIFRGAPATVPMQQLARSKESGGLTLHLPIMKCPSLLINRHLHEIE
FT                 SLPYYNSLLNQAIPLNANCLSDLPCLKSILKHFTNFPFQIRQRPSADLIHR
FT                 YFIERTDRPKVETQNVNSNWLRIWRNISSRDLSPAYRSVLYMWVNQKFRHR
FT                 QLFFKMRRSDGEQCTHCGARVETIQHKFFACPRVNDAFSLLQRKLTQATGG
FT                 RRFDSDDLLRPSLERIGTRNKSIVLKLLVNYISFIDKCNARLDIEELNFTL
FT                 DVGT"
XX
SQ   Sequence 4662 BP; 1260 A; 1236 C; 1061 G; 1105 T; 0 other;
     agttagagct caacttccga gccgatcagt cgatgttttc ggacgagcga aattcggaag        60
     tcgttcacgg actattctgt acgttattta tcgattgtat cgcacgtcgt tttcaatttc       120
     acggttcaag tcgccgcgtc gccgtgtttc gcgatgccgc gccgcgaaaa cacatttcgc       180
     gtcgattatt ctcagttccc aaagcaactt tcccacgatg aactccataa attcatcggg       240
     aaagagctcg gtcttacgcg agaacatgtg cttttgctcc agccgagcag acgattaggg       300
     tgtacgttcg tggaggtcaa cagcctcgaa ctcgccgagt ccatcgttca acaacacgat       360
     aataaacacg aattcgtcta cgacggaaag gcgtataagt tacgcataat gatggaagac       420
     ggagctgttg aagtgcgcct atttgatctg tcaaacgatg tctccaacga acacatcgcc       480
     gaatttctct cggattttgg cgacgttctc aacattcgcg atctcctttg ggacgaacga       540
     tccccattcg gtggcgtcaa aactggcgtt cgtattgccc gaatggtagt gaagaagaac       600
     attccttctc tcgtgacaat ccgcggagaa gacacggcgg taggttacaa ggggcagcgg       660
     cagacgtgtt tacactgcct agaatttgta cacgttggga tcccctgtgt gcaaaataaa       720
     aaactgctgg tccaaaaact cacagcagac caatcatacg ctaacgtagc gaaacagcca       780
     gctctgttga aaaaaccggc tcagccgaac accctactgt cgaacagatc gcagtcccaa       840
     acacaaccaa acttgtcccg gcaaccgagt tccaaaccga acgaggcccg agcgcctaaa       900
     caggtgaata gcatggctcc tccagcaaca ccctctcttc acaaatctcc cgccactcag       960
     cctatccatc aactcacacc gatttcggga ccaatcggcg tcatctctgc aaatcgcaag      1020
     accgatggta acgaaacaga caactcgcaa acttcgtacg cttcaaccag cagcatacgg      1080
     acccgtagta gacggtctcc tcctggaaaa aaaatgcgac atagcaacag caacagcaac      1140
     agcgaacaag aacgaggctc cggggacgac atgcatttgt aatggagcac accagcctca      1200
     acatcggtac aatcaacatc aacacaatca caaactcaac caagctaaat gctctccgta      1260
     cgtttattcg caccgtcgat ttggatatcg tctttctgca ggaggtggaa aatgatcagc      1320
     ttgccctgcc cggcttcaac gttgtctgca atgtcgatca tgcgaggaga ggaactgcga      1380
     tcgccctcaa agagcacatc agattctccc acatcgaaaa aagcctggac ggaagattgg      1440
     ttgccctacg agtgcacaat acaacattgt gtaacgtgta tgccccgtct ggatctgttc      1500
     tccgcaccga gcgggaacgt ttctacaaca acactatcgc ccgcgcgcgc ggccggcggc      1560
     cgggggggcg cgggccccgg ccgccgccgc cggcccggcc gggcgcccgc cccccgcgcg      1620
     cccgccgggc gcgcgccgcc gcgcgccccc cgccggcccc cccccccgcc ggccgggggc      1680
     cggcgggcgc ccccgcggcc gcgcgggcgg cgccgccccg cggcgcgcgg cggcgccccc      1740
     gggcgggggc gggccggccg cggttattat ctgcgtcatc gtaccgatca catcatcctt      1800
     ggtggtgatt tcaattgtgt aattcgtctg tgtgatgcga ctggatccaa ctcaagcccc      1860
     gcactccagt cggccataca gcagcttcgg ctgctcgatg tgtggcaaca gctccgatct      1920
     cgtgagtcgg gatacacgta cataacacac aactcttcgt ccaggctcga tcgtttttat      1980
     gtgagcgcta acctccgaga gcatctgaga gcaacgtctg ttcacgtctg ctgcttctca      2040
     gaccacaaag ctgttacggc gagactatgc cttcctcttc ccgaccgcgc acccggtcgt      2100
     ggatattggt ctcttcgtcc acacctcctc accaccgaga acattgcaga gctccaaatc      2160
     agctggcagt actggactcg ccaacgccgt tattacccat catggattga atggtggctg      2220
     tcttacgcta agccgaaatt caaatctttt tttcggtgga aatccaaatt agcgtttgat      2280
     gcttttcatc gtgagcagca gcgtctttat gaacggctaa gccaagcgta cgatggctat      2340
     cataacaacc gtaacatgat aacaaacatc aaccgaataa aagccgaact actttctcac      2400
     cagcgtcgat tctccgagat gttcatacga ataaatgaaa cgctgttagc cggagagcca      2460
     ctgtccattt accagatagg agaacgaacg agacgtaaaa ccaccatcga tcagctgtgc      2520
     gacgcacacg gtgcggctat cgacgattcc gatgcaatcc gcaaccacat ggtagagtat      2580
     ttttcaaatc tctatgcacg ggagaatgtg gatgaggaag acgaaggaag aatgttccaa      2640
     tgcgagagaa taattcccga gcgagatgct gtaaatgaag cctgtatgaa cgacatcaca      2700
     actgccgata ttttatcggc cataagaacg agcgcgtcga aaaagtcgcc cggacccgac      2760
     ggattgccga aagaatttta cctacgaaca ttcgatgtga tccaccgtga actgaacctg      2820
     gttttgaatg aagctctcag gtcaaacttt cctacacaat tcgtcgatgg cgtgattgtg      2880
     ctggtgaaaa agcgatgtgc gggaaatacg gctcgatcat atcggccgat cagcttgata      2940
     aattttgatt ataaaatttt agccagaata ctgaagcggc gcatcgaaaa tgtgctccgt      3000
     tctcacaaca tattaactgc tgcgcaaaag tgttcgaacc ccgagaaaaa tatttttcaa      3060
     gctactctgg caatcaaaga caggattgct caactgaaag caaacggtcg aactgccaag      3120
     ctgatcggtt ttgatttaga ccatgcattt gatcgagtag accaccgctt cttgtttaat      3180
     acaatgcatg ccctgggttt tgacacatcg atggtgaatc tgttgtctcg tatagcagca      3240
     tccgcatcgt ctcgcttact aatcaacggc tttttatcat caccctttcc aatcgagcga      3300
     tcggtcagac aaggtgatcc gctatctatg cacctttttg tgctatatct tcatcctctc      3360
     ctgcgacgtt tggaagaagc gtgtggtgga gaattgattg ttgcgtacgc tgatgatatc      3420
     agcgcaatag ttaccagtgt ggatcagata aatgcgatgc gagatttgtt cagacgtttt      3480
     ggacgtttat ctggtgctcg tttgaacgag gctaaaacga ctgcaatcaa tgttgggtta      3540
     attaatgacc cattaaacgt gccgtggttg tgtacagaaa atacgattaa aatacttggt      3600
     atcgtattca ctaactcagt ggtggagatg gttcatctaa actgggatat gctcgtcacg      3660
     aacttttctc ggcaagtttg gctacactca caacgcggtt tgtcccttca ccaaaaggta      3720
     actctactga acacgttcgt atcatccaag atgtggtata ttgccgcaca cctagcgcca      3780
     acatcagcac acgtagcaaa ggtcacggca acaatgcggc ggtttatatt tcgtggagcg      3840
     ccggcaactg taccaatgca gcagcttgcg cgtagtaaag aaagtggcgg tcttacgcta      3900
     cacttgccta taatgaagtg cccatcgtta ttaattaacc gtcatcttca cgagattgaa      3960
     tccctacctt actacaactc cttacttaac caagcaattc ctctcaatgc aaattgtctc      4020
     tcagatcttc cctgcctaaa atcaatcctc aaacatttca ccaactttcc cttccaaata      4080
     cgccaacgcc cttccgccga tctcattcat cgatacttca ttgaacgcac ggacagacca      4140
     aaagtggaga cacaaaatgt gaactcaaat tggcttcgaa tatggagaaa catatcgtca      4200
     cgggatcttt cgcctgctta ccggagtgta ctctacatgt gggtgaatca aaagtttcgg      4260
     caccgtcaac ttttcttcaa aatgaggcgg tcagatgggg aacaatgcac acactgcgga      4320
     gcacgcgttg aaaccataca gcacaaattt tttgcttgcc cgagagtcaa tgacgcgttt      4380
     tcacttctac aacgaaagct gacacaagct actggcggta ggcgtttcga cagtgatgat      4440
     cttctgcggc cctctttgga aagaatcgga acacgaaaca aatcaatagt tttgaagctt      4500
     ttagttaatt atatttcctt tattgataaa tgcaatgcaa ggttagatat agaagaatta      4560
     aatttcactc ttgatgttgg aacttgaata attatgtaaa catttttaaa tccaattcga      4620
     caaataaacg tacttataaa aaaaaaaaaa aaaaaaaaaa aa                         4662
//
ID   L1-43_AAe   repbase;    DNA;    INV; 4598 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-43_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4598
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1396-1396 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >93%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..1148
FT                 /product="L1-43_AAe_1p"
FT                 /translation="MDSLRKQNFFIDIREIRKLRDENIFNFIAKNLKLTPS
FT                 DVAAIQIDRIEGKVFVELQTQEAVQKVVEEYDNKYVLNYNGATHRMRLYIE
FT                 DGGTDVKLHHLPPKMPEEWIVDYLSNFGEIISVKQEMCRSQFFSQTPSGVR
FT                 IVRIRMTTPIPSFINIKGYSSHCTYSNQIQTCKHCNQEVHFGISCAENRAK
FT                 LSTQNKPSSLYSRVLVGTTKEQAETAPDTATQKHSSTQQQISTQQQPPSHF
FT                 KRPASPLNTESREKSVKTVTSETESTTEQPAPQATRPTKXTEMKSSVVSDR
FT                 SRTTPTNSRSNSLTRATDKITMEISDDELLDMTRTRRSSKNRHDGK"
FT   CDS           1161..4559
FT                 /product="L1-43_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEDSIRIQHFSYTFATINLNGISNTTKINALRDFVYT
FT                 LDLDIVALQEVVGDCISIPGYAMIMNIDETQRGTAIGVRNGIGVKQVHRSL
FT                 DARVICIELGNDENMIKIVNLYAPSGSNNRSARELFFNQTVPQFLXNHPAH
FT                 VIMLGDFNSVIESRDATGVSNMSPMLKRLCDSLNLTDVWKHFNRQIDYTFS
FT                 RGRSMSRIDKIYVTQACLQNTRYCRHEANCFSDHKAVVSRIVLPLQTQPVE
FT                 RPYWKLNNQLLNDENLNELRIKWNYWVRQRRNYASWVDWWAIYAKGKIASF
FT                 FRWKNSVAVQTFRNESMTKGRKTKGRKDKRSKNKKEGTKGRKSFFKEGKIS
FT                 HQANHFRPFVLSTFCLSTLLSFRRFVFRPFLS*TFRNTMGFYYTCLNRAFE
FT                 QHRDLDCTTEINRIKATMLQKQKQFSESRKIPNVSFLGGENVSIFQIEDQE
FT                 NRHRDTSISMLDVNHRRITDKMEINNCILEHYRNLFDEEPIEEDDMFYPRR
FT                 AINAEHEGNSHLMDDFTENEIFTVIRESAPNKSPGKDGLTREFYVKAWDII
FT                 KRELILMINEIKNGNVRHDLQDGVIVLVRKKGGDNSINALRPITLLNVDYK
FT                 IFSRVMKQRLEPIATAVLSPHQKCSNGDRTIFEATCTIRDHIAASKQERTG
FT                 GIVIACDLSNAFDRVSRSYLLSTIRGMRFNERFVDLLTDLSAHTNSQITIN
FT                 GHTTECFPIKRSVRQGDPLSMLLFVLYLQPLLDALAEICNGPGECVIAYAD
FT                 DITIIIRCSSKVRRLIDCFNRFGIAAGARLNMRKTEALNIGVPLPNWDGFI
FT                 QKDVIKVLGVLFKSSIKETVARNWEAVYRSVNGLLWMHRPRLVNIKQKVVL
FT                 INTYICSKLWYMSSILPMPNKYVAQFTKQIGYFLWNGVSAQRVKMIDVFRP
FT                 RLQGGLGLHSPDLKTKALLTNRYLRLLGITPCMNRYMQMQQVPSDLLHLKI
FT                 IKSVKEGIPRQIIDNPTASLIYNHLLKQLPAVSITTRHTRNWKIIWKNINH
FT                 KNLTSDEKSAFFLLVHGKLNHNELFFRQERRDDADCQLCGLVETLEHKFCT
FT                 CVGINNLWQSTISNIQVIAQQNNINFENLHYPTISCNRRIKGKILKIFIRY
FT                 IMYHLEIPDNAKSCESLRNYFVMYV"
XX
SQ   Sequence 4598 BP; 1547 A; 939 C; 954 G; 1156 T; 2 other;
     cagttatcgt caagctacca agctatacag acgtgagtca aagcgatcgc tattgtaaaa        60
     taaaaaatca catcggtacg gtattggaaa ggggtttaaa gcttgatcct aggaccaagc       120
     ccccaaccgc gactatggat tcgctgagga aacaaaactt cttcatcgac attcgtgaaa       180
     ttcgcaagtt gagggacgaa aacatcttca atttcattgc gaaaaacctg aagctaacgc       240
     catcagacgt tgccgcaata caaattgatc gaattgaggg caaagtattt gtggagctac       300
     aaacacagga agcggttcaa aaggtagttg aggagtacga caacaaatac gtgctcaact       360
     acaatggcgc tactcaccgt atgagactgt acatcgagga tggaggtacg gatgtaaagc       420
     tgcatcatct gccaccgaag atgccggagg agtggattgt tgactaccta tccaacttcg       480
     gagagatcat cagtgtcaag caggaaatgt gccgttcgca gttcttctcc caaacaccaa       540
     gtggcgtacg tattgtacgt atacgcatga caacacctat tccttcgttc atcaacatca       600
     aagggtacag tagccactgt acctacagca atcagattca gacctgcaag cactgtaacc       660
     aagaagtcca tttcggaatc agctgtgcag aaaaccgagc aaaactgtca acacaaaaca       720
     aaccttcatc actctactcc agagtgcttg ttggtaccac caaagagcaa gcagaaaccg       780
     caccagatac agcaactcaa aaacactcgt cgacccagca gcaaatctca acacaacaac       840
     aaccaccaag ccacttcaag cgtccggctt cgccgcttaa cacggagtct cgagagaaat       900
     cagtgaaaac tgtaacctcg gagactgaat ctacgactga acaacctgcg ccccaagcaa       960
     cccgaccaac gaaggkcacc gaaatgaaga gcagtgtggt gagcgaccgt tcgcgcacta      1020
     cgcccaccaa cagcagatca aattctctca ccagagcaac cgacaagatc acgatggaaa      1080
     tttcggatga tgagttactc gacatgacga gaacacgacg atcatcgaag aaccggcacg      1140
     acggcaagta aaatatagtt atggaagact cgattagaat acagcatttt tcctacacat      1200
     tcgcaacaat caatttgaac ggcataagca atacaaccaa aataaacgcg ttgagagatt      1260
     tcgtatacac actagactta gacatagtag cactacaaga ggttgtcgga gattgtataa      1320
     gtataccggg atatgctatg atcatgaata tcgatgaaac acagcgaggt acagcaatag      1380
     gagttcgaaa cggtataggt gttaagcaag tacatcggag cttggatgca agggtcatat      1440
     gcatcgaatt aggaaatgat gaaaatatga tcaaaattgt caatttgtac gcaccgtcgg      1500
     gatccaacaa tagatcagcc cgcgaattat ttttcaatca aaccgttcct cagtttctgc      1560
     waaatcatcc agcacacgtc ataatgttgg gtgattttaa ctccgtaatt gagtcacgag      1620
     atgccacagg tgtctccaat atgagtccaa tgcttaaaag attatgtgat agtcttaatc      1680
     tcacagacgt ttggaagcac ttcaatcgac aaatcgatta cacgttttcg cgagggcggt      1740
     ctatgtctag aatcgataag atatacgtta cacaagcttg cttacagaat acacgatact      1800
     gtaggcatga ggctaattgc ttcagtgacc ataaagccgt tgtatctcgt atagttctcc      1860
     ctttgcaaac tcaaccagtc gagcgtccct actggaaact taacaaccag ttactgaatg      1920
     atgaaaatct gaatgaattg agaatcaaat ggaattactg ggtacgtcag agaagaaact      1980
     atgcatcgtg ggttgactgg tgggcaattt acgcaaaagg gaaaatagcc tcttttttcc      2040
     gttggaaaaa ctcggtggct gtacagacat tcaggaatga atctatgaca aaaggtcgaa      2100
     agacaaaagg tcgaaaggac aaaaggtcga agaacaaaaa agaagggaca aaaggtcgaa      2160
     aatctttttt caaagaagga aaaatttccc accaagcaaa tcattttcga ccttttgtcc      2220
     tttcgacttt ttgtctttcg acccttttgt cctttcgacg ttttgtcttt cgaccctttt      2280
     tgtcctaaac cttcaggaat accatgggtt tttactacac atgcctaaat cgtgcttttg      2340
     agcagcatag agatctagat tgtacaacgg aaatcaacag gatcaaagcc acaatgctgc      2400
     aaaaacagaa acaatttagc gaatccagga aaataccaaa cgtatctttt ctgggcggtg      2460
     agaatgtttc aatttttcaa attgaggacc aagaaaacag acatcgggac actagcatct      2520
     caatgttgga tgtgaatcat cgacggatta cggataaaat ggaaatcaat aattgcattc      2580
     tagagcacta tcgaaacctt ttcgacgaag aacccatcga agaggatgat atgttctatc      2640
     caagacgagc aataaatgct gagcatgaag ggaacagcca ccttatggat gatttcacgg      2700
     agaacgaaat tttcaccgtg ataagggagt ctgcaccaaa caaatcacca ggtaaagacg      2760
     gtcttacgag agaattctat gtcaaggcat gggacatcat caaacgagag ctcattttga      2820
     tgatcaacga aatcaaaaac ggtaacgtga ggcacgattt gcaggatgga gtaattgttc      2880
     ttgtgcgcaa aaagggagga gataacagta taaacgctct aagaccgatt acacttttaa      2940
     acgtggacta caaaatattt agcagagtaa tgaaacaacg gctagaaccg attgctacag      3000
     cagtgctttc tccccaccag aagtgcagca atggagatcg tacaattttt gaagcaacat      3060
     gtacgatcag agatcacatt gctgcatcaa agcaagaacg tactggaggt atagtcatag      3120
     catgtgatct tagcaacgct tttgataggg tcagtcggtc ttatctttta tctaccattc      3180
     gtgggatgag attcaacgaa cgctttgtgg atcttttgac tgacctatca gctcatacga      3240
     attcacagat caccatcaat gggcatacta ctgaatgttt cccaataaag agatctgtca      3300
     gacaagggga tccgctaagt atgttgctgt ttgtgttata tctacagccg cttctagatg      3360
     ctttagcaga aatatgtaat ggtcctggtg aatgtgttat agcttatgca gatgatatta      3420
     cgattattat tcggtgttca tcgaaagtac gtcgattaat agattgtttt aaccgattcg      3480
     gaatagctgc tggcgcaaga ttgaatatga ggaaaacgga agcattaaat atcggtgtac      3540
     cacttccaaa ctgggacgga ttcattcaaa aagatgttat aaaagttctg ggggtactat      3600
     tcaaaagcag cattaaggaa actgttgctc gtaattggga agctgtatac cggagcgtaa      3660
     atggtcttct ctggatgcat agaccgcgtt tggtgaacat aaagcagaaa gtcgttctaa      3720
     taaatacgta tatatgttca aagctctggt atatgtcgtc gatccttcca atgccgaata      3780
     aatacgtcgc acagtttact aagcaaatag gatattttct gtggaacgga gtatcagcac      3840
     aacgggtcaa aatgattgac gtttttaggc cgaggctaca aggaggtttg ggattgcatt      3900
     caccagatct caagacaaag gctctcttga ctaaccgata cttgagactt ctgggtataa      3960
     caccctgcat gaaccgatac atgcaaatgc agcaagttcc ttcagatctc cttcatctaa      4020
     aaattataaa atcagttaaa gaaggcatac cacgtcagat aatcgataat ccaacggcaa      4080
     gtctcatcta caatcatttg ctgaagcagt tacccgctgt aagtatcact acgcgacata      4140
     ctcggaactg gaaaataatt tggaagaaca tcaaccacaa aaatctgacg tctgatgaga      4200
     agtccgcatt ctttcttcta gttcatggaa aattgaatca caatgaacta tttttccgtc      4260
     aggagagaag agatgatgct gattgtcaac tatgtggact agtagaaact ttagagcata      4320
     agttttgcac atgtgtcgga atcaataatt tgtggcaatc aaccatttca aacattcaag      4380
     taatagctca acaaaataat attaattttg aaaacttgca ttaccccaca ataagttgta      4440
     atagaagaat taagggcaaa attttaaaaa ttttcattag atacataatg taccatttag      4500
     aaattcccga caatgctaaa agttgtgaat cacttagaaa ctattttgta atgtatgtat      4560
     aaaacggtaa aataaaacac tttttagaca aaaaaaaa                              4598
//
ID   L1-44_AAe   repbase;    DNA;    INV; 4400 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-44_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4400
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1397-1397 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           159..1142
FT                 /product="L1-44_AAe_1p"
FT                 /translation="MSAKKRRENTFRIDYANVPKKPLSEEVHQFVGATLGL
FT                 KREDIVRIQYSRNLGVAFIKAACLEVAQXVVDEHDNKHELTVDGKSYKVRL
FT                 VMEDGAVEVKLFNLSEDVTNEKIARFLMGYGELFSIREEVWDEKHLFAGLP
FT                 TGVRVVRMIVRKNIPSYVTIDCETTLVAYYGQQQSCRHCSESVHNGVSCVQ
FT                 NKKLLLQKLATRSTSYADVAKNPKPSRTKVSAPKPATPSAVQAQPISSSPA
FT                 PSTSGIMPPPAVPTQHDTGAENNPATTTQMRESEKDLWVRVTRRSGKKTDG
FT                 NETDSSTSSRSSQKRPLGKKMRCDEDNDSRNTDMQL"
FT   CDS           1227..4325
FT                 /product="L1-44_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MFIQTMQLDIVFIQEIENEHLTIPGFNIIANVDHSRR
FT                 GTAIALRDHIRYSHVERSLDGRLVALRVHDTTLCCIYAPSGTVYRAQRERF
FT                 FNDTIAYYLRHRTEHVFLAGDFNCVLRQCDATGYNMSPSLQATVRQLKLHD
FT                 VWLKLRSRDAGHTYITSNSSSRLDRMYVSTSLCEHLRRVETHVCSFSDHMA
FT                 VTLRLCLPHLGQPQGRGFWSLRPHLLNEENLAELQNRWQFWTRERRNYRSW
FT                 MDWWLEHCKAKIVSFFRWKSKQAYDEFNHAHQRLYNQLRRAYEGYYRNPTM
FT                 LTTINRLKSELLLLQRRFTHAFVRINEPMVAGEPLSVFQLGDRRRKRTTIT
FT                 RIFDEQGGIIDDSQAIQHNMFHYFSELYSEPDREIEPIEEFQCDQVVPQND
FT                 PTNVACMDEITTADIWLAIKSSASKKSPGPDGLPKEFYHRAFDIIHRELNL
FT                 VLNEALASNFPSKFVDGVIVLVKKRGTGDTVTAYRPISLLNFDYKLLSRIL
FT                 KTRLENVMKTHHILSDAQKCSNADNNIFQAILSLKDRIAQLAARKQAGKLV
FT                 SYDLDHAFDRVRHTFLYENMRSLGINPELIALLSRISSLSSSRLLINGHLT
FT                 AAFPIERSVRQGDPISMHLFVLYLHPLIASLERVCGTDLIVAYADDISVIA
FT                 TSTRKIELMRDIFLRFGHVSGAILNLQKTTSIDVGFINDHPLQVDWLRTET
FT                 SIKILGVLFANSIKRMVSLNWDLLVGKVAQQVYLHSMRTLTIQQKVILINT
FT                 FITAKVWYMASVLPLYSLHTAKITATIGTFLWKGHPARVPMTQLARPKDKG
FT                 GMKLQLPVFKSKSLLINRHLQEIGSTPFYNSFLAQANPPNPPTDLLCLKAI
FT                 LQTRHSLPPHVQQNPSSDQIHRFYIDQTDLPRVEQRYPTVNWKRVWLNIAS
FT                 KDLNSTQRSAYYLLVNEKIEHRQLWHTIRRVDTERCIHCNAASETLKHKFS
FT                 ECRRVAAAWEVLNRTFQNLSNNRRRFSFEELLHPELNNMNKRQKTLIMKYF
FT                 INYVTFINKCDNFVDVSELEFYLQVEL"
XX
SQ   Sequence 4400 BP; 1279 A; 1102 C; 966 G; 1052 T; 1 other;
     cagtaagcgc tcaacttccg agccgatcag acgcactttt gcctccgtat cgtctgtgga        60
     agtcaatcgc cgacttcgca tagatttctt catttttcgg ttaagtagtg atacatcgcc       120
     gctagtttcg ctacgctttt gtgtgatcat cgtaatcgat gtccgcgaaa aaacgtcgcg       180
     aaaacacgtt tcgcatcgat tatgcgaacg tgccaaagaa gcctttgtcc gaagaggtgc       240
     accaatttgt tggtgcgacg ctcggcctga agcgagaaga tattgttcgg attcaataca       300
     gccgcaacct gggtgtcgca ttcatcaaag ctgcttgtct cgaagtggca caaaawgttg       360
     tcgacgaaca cgacaacaaa cacgagctca cggttgacgg aaaatcgtac aaggtacggc       420
     tggtgatgga ggacggggcg gtagaggtga agctcttcaa cctctccgaa gatgtcacca       480
     acgaaaaaat cgctagattt ctaatggggt acggagagct gttttcgata cgagaagagg       540
     tgtgggacga gaaacatctc tttgctggat tgccaaccgg cgtccgagtc gttcgaatga       600
     tcgttaggaa aaatattcct tcctacgtca ctatcgactg cgaaaccacc ctagtggcct       660
     actacggcca gcaacagagc tgccgccatt gtagtgaatc tgtacacaat ggcgtttcat       720
     gtgtacagaa taaaaaattg ctattgcaga agctagcaac acgcagcact tcgtatgcgg       780
     acgtcgccaa aaatccgaaa ccttcacgaa cgaaggtcag cgcaccgaag ccagcaactc       840
     cgagtgcagt ccaagcccag ccgatctcgt cgagcccggc accatccact agtggcataa       900
     tgcctccgcc ggctgttcca acacaacacg acaccggagc ggagaataat ccagcaacaa       960
     caacccaaat gcgagaaagc gagaaagatc tgtgggtcag agtaacacgc agatcgggga      1020
     agaaaaccga tggcaacgaa accgattctt caacctccag taggtcctct caaaagcgcc      1080
     cgctaggtaa aaagatgcgc tgcgacgaag acaacgactc tcgcaacact gacatgcagc      1140
     tttaatcagt catcttcacc agctacaata ctgcaactat aaacataaac actatcacga      1200
     acgaaaacaa gatcaacgcg cttcgaatgt ttatccaaac tatgcagctg gatatagttt      1260
     tcatccaaga gatagaaaat gagcatctaa caattcccgg cttcaatata atcgcaaatg      1320
     tggaccactc tagaagaggt accgcaatcg cactgagaga tcatattcgc tactcgcatg      1380
     tggagcgaag tttggatggc cgacttgtcg ctctgcgcgt ccacgacaca acactttgct      1440
     gtatttacgc tccgtccggc actgtttaca gagcacagag agagcgtttt ttcaatgata      1500
     ccatagcgta ctacctacgc caccgtactg agcatgtatt tctagcaggc gatttcaact      1560
     gcgtgctacg acagtgtgat gccacaggat acaacatgag cccttctctc caggccaccg      1620
     tgcgacagct taaactgcat gatgtatggc ttaaactgcg ctcccgggac gctgggcata      1680
     cgtacatcac atcaaactct tcctctcgtc tggatcgcat gtacgtcagc accagtttat      1740
     gtgaacatct acgaagggtg gaaacccacg tttgttcatt tagcgaccat atggcagtga      1800
     cactgcgttt atgtttgcca catcttggtc aacctcaagg gcgaggtttt tggtcccttc      1860
     gtccccacct cctcaacgaa gaaaacctag ccgagctaca aaatcggtgg caattttgga      1920
     ctcgcgaaag acggaactac cggtcctgga tggattggtg gttggaacac tgtaaggcga      1980
     aaattgtcag cttcttccgt tggaaatcca aacaagcgta tgacgaattt aatcacgcgc      2040
     accaacgtct ttacaatcaa ctgcgacgcg catacgaggg atactaccga aatccaacaa      2100
     tgctgaccac catcaaccgc ctgaaaagtg agttacttct gctgcagcga cgctttaccc      2160
     acgccttcgt acgtataaac gagccgatgg tggcgggaga acctctctcg gttttccaac      2220
     tcggcgacag gcggcgaaag cgaacaacga taacacgtat cttcgacgag caaggaggaa      2280
     tcattgatga ctcgcaagct atacaacaca acatgtttca ttatttctct gagttgtatt      2340
     ccgagccaga tagagaaatt gaaccaatcg aagaatttca gtgtgaccag gtcgtaccac      2400
     aaaatgatcc aacaaacgtt gcatgtatgg acgaaattac tacagcggac atatggctcg      2460
     cgataaaatc aagtgcgtca aaaaaatctc ccgggccgga tggtttgccc aaggaattct      2520
     atcaccgagc tttcgatatc atccaccgcg agctgaatct tgtgttgaac gaggcactgg      2580
     catcgaactt tccatctaag tttgtcgacg gggtgatcgt acttgttaaa aagaggggta      2640
     ctggcgacac tgtcaccgca tacaggccga tttccctttt aaattttgat tacaaacttc      2700
     tctcgcgaat attgaaaaca cgccttgaga atgtaatgaa aactcaccac atactcagcg      2760
     acgcacagaa gtgttcgaat gcagacaaca acattttcca agccatacta tcactaaagg      2820
     acaggatcgc acagctggcg gcgcgcaaac aagcagggaa gctcgtgagt tacgatctcg      2880
     atcacgcttt tgaccgagtg cgacacactt tcctgtacga gaatatgcgc tctcttggta      2940
     tcaatccaga attaattgct ttgctctcga ggatctcatc tctctcctct tcccgcttac      3000
     tgataaacgg acatttgacg gcggcgtttc ccatcgagcg ctcggttagg caaggggacc      3060
     caatctccat gcatttgttt gtattatacc ttcacccctt gatagcctca ctagagcgag      3120
     tatgcggaac ggacctgatt gtggcatacg ctgatgatat tagtgtgatt gccacttcga      3180
     cacgcaagat cgaactgatg cgagatattt ttcttcgttt tgggcatgtt tctggtgcaa      3240
     ttttgaatct gcaaaaaacc acatccatag atgtgggttt catcaatgac cacccattgc      3300
     aagtggattg gttacgaact gaaaccagca tcaagatact gggagttcta tttgccaact      3360
     caataaagcg aatggtaagc ctgaactggg acttgttggt cggaaaagtt gcgcagcaag      3420
     tttatcttca ttcgatgcgc acacttacta tacagcagaa ggtaatactc atcaacacgt      3480
     tcattactgc aaaagtttgg tacatggcgt ctgtgttgcc gctatacagc ctacacacag      3540
     ccaaaattac agctaccatc ggaacctttt tgtggaaagg acacccagct cgtgtaccaa      3600
     tgacgcagct tgcgcgacca aaagacaaag gcgggatgaa acttcaatta ccggttttca      3660
     aatcgaaatc tcttttgatc aaccgacatc tgcaagagat cggctccact cccttttata      3720
     attcctttct tgcacaagct aatcccccaa atccacctac agatctcctt tgcctgaaag      3780
     caatcctgca aacgcgtcat agtttgcctc cccatgtcca acaaaatccc tcctccgatc      3840
     aaatccaccg tttttatatt gatcaaaccg accttccgag agtggaacag agatatccaa      3900
     cagtaaactg gaagcgtgta tggctgaaca tcgcaagcaa ggatttgaac tcaacccaac      3960
     gtagtgcgta ttacctcttg gtcaacgaaa aaatcgagca ccggcagctg tggcacacca      4020
     ttcgccgagt cgacaccgaa cgctgtatcc actgcaacgc agcgtcagag acactcaagc      4080
     acaaattcag cgaatgccga cgcgtggcag ccgcgtggga ggttttgaat aggacgtttc      4140
     agaacctttc gaacaatcga aggaggtttt cctttgagga gctgttacat cctgaactaa      4200
     acaatatgaa taaacgacag aagacactaa taatgaaata tttcatcaat tacgtcacat      4260
     ttatcaacaa gtgtgataat ttcgtggacg taagcgaatt agaattttat ttacaagttg      4320
     aattgtgaac aaattgcact gtaattagtt ttaaacaaga tcaaccgaaa tacactatat      4380
     tttatgtaaa aaaaaaaaaa                                                  4400
//
ID   L1-45_AAe   repbase;    DNA;    INV; 4783 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-45_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4783
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1398-1398 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1390
FT                 /product="L1-45_AAe_1p"
FT                 /translation="MTAVRARENTFKVDLSNFPKRPSFEEIHGFIHETIGL
FT                 TVDQVLRLQMNHAQNCAHVKCRDLKTAQDVVDRHNNRHEFEVNKTKIKVRL
FT                 AMDDGGVEVKIHDLSENVRNEDISSYLTQFGDVVSIKEQFWGENFAFKGVS
FT                 SGVRVAKVILRRHIKSFVTICGEETLISYRNQPQWCKHCTNPSHPGMTCVE
FT                 NKKLLGQKIDLNNRLKAAQNKSSYASVLHQPASVASLMPEFVGTNLNQLNE
FT                 AARSSRAQTVADEAAASSSASVSTPSKYQERMDENEGMVNVVNTVESASTA
FT                 AAAVVADATAAPDVNAVAAAAVVAVPVVADGSSVDQSTQQDXQTRPDANVT
FT                 APCHVSAFKIPTNPIPSNPTSMMISESESNESSTESGPFTKVKRARGRPKK
FT                 QKLDVTLPMYVDSA"
FT   CDS           1530..4712
FT                 /product="L1-45_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNHPIRSYNIGSININAVSNQNKIASLRSFVRLVDLD
FT                 IILLQEVESANMCIPGYNVITNIDENKRGTAIALKAHIPYSNVQRSLNSRI
FT                 LTVKVSDSVTICNVYAHSGTQNFSAREKLFREQLPFYLQNSAEHMIVGGDF
FT                 NCVIAAKDATGTSNFSRSLKQLVDNLHLSDTWDCLHGSSIDYSFVRPNSAS
FT                 RLDRIYVSRSLVPHLRTSELFVTSFSDHKAYKIRCCLPNLGKPHGRGYWSI
FT                 RAHVLNEENLDEFRQKWNRWLRERRNYNSWMSWWIECAKPKIRSFFRWKTN
FT                 ESFREFHATNELLYRRLRDAYSELYHNPNGMTKVNEIKAKMLNVQSRFSKA
FT                 YERLNDRFVCGEKVSVFQIAERYRKKTVISSIHHHEHCLTDVSEIETHVYE
FT                 FFKDLYSAEELNNGENFPTNRVIPPDSNTNTVMMNEITTAEIFFAIKESAS
FT                 RKSPGNDGIPKEFFLKAFDIIHPQLNLIMNEALRGNIPEKFVEGVIVLCKK
FT                 KSNDNTVKGYRPISLLNYDYKLLSRILKQRLENVMIENNLLTPSQKCSNSE
FT                 HNIFEAIHSIKDRIAELNCRRVSGKLISFDLDHAFDRVSKDYLLVVMRNFR
FT                 LNPNFVELLGKIMSASNSRLLINGNLTPKFPIQRSVRQGDPLSMHLFVLYL
FT                 HPLLVKLRTICNHPLDLVVAYADDISIVITDMRKLNLIKQAFLDFGRCSGS
FT                 LLNFDKSFAVNIGTQHNNDAVWPRVRESIKILGVTFFNSQKQTIDFNWGEV
FT                 IRNTSRLMWLFKPRNLTIQQKVVVLNAFVTSKLWFLASVFSIPNQAIARIT
FT                 SHIGNFIWERYSLRIPIEQLTLPKAMGGLNLHLPMHKCKALLITRFIKDQQ
FT                 HTPFARSFNHCLQNPPNVAAIPALYPCLKSIAKELPYVPGQLRENPSTSAL
FT                 HNYYREKLRRPKIVEEYARANWKRIWRNIRTKGLTSLEQSTYYLLVNGKIP
FT                 HAELLYRQNRAQSPMCHQCPNSVEDLEHKFTTCLRTNALWNYLQPRLEATL
FT                 GRRIGFNDLRLPELGNVASDRKYRALKLFIGYVNFVLDANNDLSVQALEFV
FT                 LNCL"
XX
SQ   Sequence 4783 BP; 1410 A; 1091 C; 992 G; 1288 T; 2 other;
     cagttaggtt caagctatcg ctgcaaccag acgtgttttt caatcttact ccgtatcggt        60
     tttttttcgt ctcgcttctt gtctcccact gcggtgcgga gaacgttttc tagcgtcaga       120
     ttttctggcg acaataagta ttgtgctatc caacgcgtta gcaaccatga ccgccgtgcg       180
     tgcccgcgag aataccttca aggtagactt gtcaaacttt ccgaagcgtc cttctttcga       240
     agaaatccat ggatttatcc atgagacgat tggtctcacc gtggaccaag tgctgcgcct       300
     gcagatgaac cacgcacaaa attgtgcgca tgttaagtgc cgtgacctga aaactgctca       360
     ggatgtggtt gaccgtcaca acaaccgaca cgagttcgaa gtcaacaaaa ccaaaatcaa       420
     agttcgcttg gcaatggatg atggaggcgt ggaggtaaaa atccacgact tgtccgaaaa       480
     tgttcggaat gaggacattt cgtcatacct gacgcaattt ggagacgttg tttcaatcaa       540
     ggaacaattt tggggagaaa atttcgcctt caaaggcgtg tcatccggag ttcgagtggc       600
     aaaagtaatc ctgcgacgtc acatcaaatc gtttgtgacc atttgtggcg aggagaccct       660
     gatttcttac cggaatcagc ctcaatggtg caagcattgc acgaacccat cacatccagg       720
     gatgacatgt gtcgagaaca aaaagttact cggacaaaag atcgacctca acaacaggct       780
     gaaagcagcg caaaacaagt cgagctacgc cagcgtgcta caccagccgg caagtgtagc       840
     ctcgcttatg cctgagtttg ttggtaccaa tctaaaccaa ctgaacgaag ccgctcgctc       900
     atctcgagcg caaacagtag ctgatgaagc tgctgcgtcc tccagcgcaa gcgtctccac       960
     accctccaaa taccaagaac gaatggacga gaacgaagga atggtaaacg tggtaaacac      1020
     cgtcgaatcc gcttctactg ctgctgctgc tgttgttgct gatgctaccg ctgcccccga      1080
     tgtcaatgct gttgctgctg ctgctgtcgt tgctgtcccc gttgttgctg atggttcatc      1140
     ggtggatcaa tccacccaac aggatgmgca gactcgccct gatgccaacg ttactgcgcc      1200
     ctgtcatgtg agtgcgttta agattcccac aaatcccatc ccatccaatc ccacttccat      1260
     gatgatttcc gaaagcgaaa gtaacgaatc gtccaccgaa agtggaccat tcacaaaggt      1320
     caaacgtgca agggggcgtc cgaaaaagca aaaattggac gtcactttac ctatgtatgt      1380
     cgattctgcc taaaaatact aacgatgttc tgaaagttat ccgatggacc taaactaaat      1440
     actaatcaga tgcaccttaa tcccatccaa attattaacc tcgagtcagc cgcgagtatg      1500
     ttcggctccc cgtcttgtaa cacgatatta tgaaccaccc tatccgaagc tacaatattg      1560
     gttcgatcaa tataaacgct gtctccaacc aaaacaaaat tgcttcgctc cgctcattcg      1620
     ttcgtttggt ggatttagac attattcttc tacaagaggt tgaatctgca aacatgtgta      1680
     tccctggtta taacgttatc accaatatag acgagaataa aagaggtacc gcaatcgctc      1740
     taaaagccca tataccctac tccaatgtcc agagaagtct gaatagccgt atcttaacag      1800
     ttaaggtttc tgattccgtt acaatctgta atgtttatgc gcattccggc acccagaact      1860
     tttctgctcg tgaaaaacta ttcagagaac aactaccctt ttatctgcaa aattctgctg      1920
     aacatatgat agtaggcggt gattttaact gcgtgatcgc tgccaaggat gccacaggta      1980
     caagcaattt tagcaggtcc cttaagcaat tagtagataa tctgcatctt tctgatacgt      2040
     gggactgtct ccatggaagc tctattgatt acagttttgt tcgcccaaac tctgcctctc      2100
     gtttagatcg aatatacgtt tcaaggtcgc ttgttccgca tctccgcacc tccgaattgt      2160
     ttgttacgtc cttttcagat cataaagcat acaagattcg ttgctgtctt ccaaatctgg      2220
     gtaaaccaca cgggagagga tattggtcca tccgtgcgca tgttctcaat gaggaaaatt      2280
     tggatgagtt tcgacaaaag tggaatcgtt ggttgcgcga acgccgaaac tataacagtt      2340
     ggatgtcgtg gtggattgaa tgtgcaaagc caaaaattcg tagctttttc agatggaaaa      2400
     ctaatgaatc gttccgcgag tttcatgcga caaatgaact gttgtatcgt cgactacgag      2460
     atgcgtatag tgaactgtat cataatccga atggaatgac aaaagttaac gaaatcaaag      2520
     caaaaatgtt aaacgttcaa agccggtttt ccaaagcata tgaacgtttg aatgatcgat      2580
     ttgtgtgcgg ggaaaaagtt tctgtgtttc aaatagctga acgttatcgg aagaaaactg      2640
     tgatcagttc catccatcat catgaacatt gtctaaccga tgtttctgaa atagaaactc      2700
     atgtgtacga gttctttaaa gatctgtatt ctgcagaaga actcaataat ggtgaaaatt      2760
     ttccaaccaa tcgagtgatc cctcctgatt caaatacaaa tactgtcatg atgaacgaaa      2820
     tcacaaccgc ggaaattttt ttcgcgatta aagaaagtgc ttctcgaaaa tcccccggaa      2880
     acgatgggat acccaaagag ttctttttga aggctttcga tatcattcat ccccaactca      2940
     acctaatcat gaacgaagct ttaagaggaa atatccctga gaaatttgtt gagggagtta      3000
     tcgttttgtg taaaaagaaa tcaaatgaca atacggtaaa aggatatagg ccaataagtc      3060
     tcttgaacta tgactacaag ctactatcaa gaatacttaa acagcgtctg gaaaatgtta      3120
     tgatcgagaa taatcttctw acgcctagtc aaaaatgttc aaattctgaa cataatattt      3180
     ttgaagcaat tcattcgatc aaagatcgaa ttgcagagct taattgccgc cgtgtttccg      3240
     gaaaattgat ttcgtttgac ctcgatcatg cttttgatcg cgtcagtaaa gattatcttt      3300
     tggttgtgat gcggaacttt cgtttgaatc ctaatttcgt agaactctta gggaagatta      3360
     tgtccgcttc aaactctcgc ttgctcatca atggaaatct aactcccaag ttccccatcc      3420
     aacgctccgt ccggcaagga gaccctttga gtatgcatct ttttgtcctt tacctccatc      3480
     ccctcctggt taagttacgc accatatgca atcatccgct agatttggta gtagcgtatg      3540
     ctgacgacat atcgatcgtg ataactgaca tgcgcaaatt gaacctcatt aagcaagctt      3600
     ttctggactt cggccggtgt tcagggtcgc tcctgaattt cgacaaatct tttgctgtta      3660
     acatcgggac ccaacataac aatgacgctg tatggccacg agtgcgtgaa tctatcaaga      3720
     tactaggagt aactttcttc aactcgcaaa agcaaacaat tgatttcaac tggggcgaag      3780
     tcataaggaa tacgtctcgg ttgatgtggt tgttcaagcc aagaaatctc accatacagc      3840
     agaaggttgt ggtgcttaac gctttcgtca catcgaagct atggtttcta gcatctgtgt      3900
     tcagcattcc gaatcaagct atagcacgca ttacttcgca tataggaaac ttcatctggg      3960
     aacgatattc tctcaggatt ccaattgaac agctcaccct gcctaaagct atgggtggtc      4020
     ttaacttgca tctcccaatg cataagtgca aggctttgct gatcacgaga tttatcaaag      4080
     atcagcaaca cacaccgttc gctaggtcct tcaatcactg ccttcaaaat ccaccaaatg      4140
     tagcagcaat ccccgctctc tatccctgct tgaagagcat cgccaaggaa ctcccttacg      4200
     tgcctggaca acttagagaa aatccttcga catctgctct gcacaactat taccgtgaga      4260
     aattaaggag gccaaaaata gtggaggaat acgcaagagc aaactggaag agaatttgga      4320
     gaaatatacg aacaaaagga ctcacatctc tggaacaatc tacgtactac ctactagtga      4380
     atgggaagat tccacatgct gaacttctat accgacaaaa ccgtgcacaa agtcctatgt      4440
     gccatcagtg tccaaacagc gtagaagatc tagaacataa attcactact tgcctacgaa      4500
     cgaatgcatt gtggaattat cttcaaccac ggttggaagc aaccctaggt aggaggatag      4560
     gattcaacga tctccggtta ccagagctgg gaaacgtagc cagcgacagg aaataccggg      4620
     cgctgaagct atttatcggt tacgtaaatt ttgttttaga tgccaacaac gatctctctg      4680
     tccaagcgtt agaatttgtt ttaaattgtt tgtaaatgta aaatgtgtac gcgtctagtt      4740
     aaatgaagtt ccaataaatg tgtttaaaaa aaaaaaaaaa aaa                        4783
//
ID   L1-46_AAe   repbase;    DNA;    INV; 4530 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-46_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4530
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1399-1399 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1185
FT                 /product="L1-46_AAe_1p"
FT                 /translation="MAVPVQTTRINTFMVNFSEVTRKPKVEVITDLIFNKI
FT                 KIPSQRVKSFQFNGSRGVTYVECDSLDYALEIVENHDRKHEVAYDNVKVFV
FT                 PLLMDDGATVVRLHDLPPQMDNDYIKNEMTKYGEVLSIKSEVWETPEQLKG
FT                 IPNGVRKLRIRLVASIPSYIFMAGHSTHVTYKNQQITCRHCGRQVHYGAKC
FT                 AEAVQIINSQRSVNTRLQRGSSGYADVLQGQGQKKRAASDDWIGPNMVNLN
FT                 SLNKKWASRSPITTTDQPSTSSTDNVTEQKPDSEFKIPSKTARVSNIIGGS
FT                 DEMANASEGPSDNTNINQFDVLMSEDDDKSPYFSDSSMVSDSSITGKRKSR
FT                 KRNSKTK"
FT   CDS           1185..4412
FT                 /product="L1-46_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNTNTTYNVNNGLISYSIATINLNNISNTNKINSLKT
FT                 FVNLMDVDVILFQEVESENIELYGFEIVYNVNHDRRGTAIAYKAHIQCTAV
FT                 ERSIDSRVIKIKLNNNIVICNIYAPSGSSNRSSREYFFNEIVPYYLRGSNE
FT                 FMILGGDFNCVETAKDSSNDYTNNFSPMLKRLRQALQLEDAWEVKFGSNKE
FT                 YSFIRGGFGSRIDRIYVSQSLSLNVVDAKYQVTSFTDHKAHIVKVKLPSLG
FT                 KPFGRGVWHYKSLVLEDDNNKEEFKQKWRYWVSQRQYYRNWVVWWAEYAKP
FT                 KVVSFLRWKSRNMYNDFNSNMEFWYYALRRAYNEYLTDPLQISEINRIKGK
FT                 MLKLQHDFSAFLSRNNEIHLNHEPLSIFHLEQKHQKKNKTRIKSFVIDGRL
FT                 EENQENIKSHVVEQIENLFKSEEVATNNDFKPGRSIPNDFLENEELMEEID
FT                 EDEVFCAIKSSASRKSPGMDGLTKEFYMDCWNIIKVEITAVLNCFLRGNIE
FT                 KKMCDGMIVLIRKKNSGNSIDGYRPITLLNFDYKIVSRILKFRLNRLMPFL
FT                 VSCNQKCSNPRRNIFEATCSIRDRIVELQHKKRKALLVSFDMEKAFDRVEP
FT                 RFLFKTLREMNVSDRFVSFLEKVRDVSFSKILINGTLSREVKIERSVRQGD
FT                 PLSMHLFVLYIEPLLQKIVASCSDSLDLINVYADDLSLVVNNLNDLEIVKT
FT                 HIINFGMISGARLNVSKSKAVEIGFGSTPLPTVPWLKVEERIKVLGIYFSN
FT                 SLKKMTVDNWTNAISSVTFSININQARKLNLMQKVFFLNTFALSKVWYVAS
FT                 TIKINNKFCAKLKSLIGTFLWRGYGARVAFNQLILPKDRGGLSLHDPESKC
FT                 NALIVKNFIKLNYDNSFIVNQFLNQLSNDANIPANYDYIKLLANEIPNLPP
FT                 AIRNNISSKAVYDIQITKKPNPEITSKYANKNWSKVWRNLFTPKIMSSEAR
FT                 SAYYLLINEKIPNMESFHRHGRVSTNLCRSCNVAIETIPHIFAECDSSKSF
FT                 WNLCXSKLKGINANEIQRMNFNNFKVPELGRFSRAERNKVLEMFSKFVMYI
FT                 NKTLANNRSLVELNDILTN"
XX
SQ   Sequence 4530 BP; 1627 A; 742 C; 921 G; 1238 T; 2 other;
     cagtctcgat ttggcttttg atgcgtgcag acgtgctttc gaaacgttca atagtgagtg        60
     aataatacaa atattgcctt cggaagaggg acaaatagtt accaacacat aacacacacg       120
     aacaagtgaa caaacatggc ggtaccggta cagacaaccc gaatcaacac gttcatggtc       180
     aacttttcgg aagtgactag gaaacccaag gtcgaggtaa tcacggattt gattttcaac       240
     aagataaaga taccatcgca acgagtgaag tctttccaat tcaacggatc acgtggagta       300
     acgtacgtcg agtgtgatag tttggattat gcgctagaaa ttgttgagaa tcatgacaga       360
     aaacacgagg tggcttacga caacgtgaaa gtctttgtcc ctctacttat ggatgacggt       420
     gcaacagtgg tcagactaca tgatttgcca ccgcagatgg acaacgatta cataaagaac       480
     gagatgacga aatatggaga ggtgttgtca atcaagagtg aggtatggga aacgccggaa       540
     cagctgaaag ggataccgaa tggggttaga aagctgcgga ttcgtctggt cgcttcgatt       600
     ccatcctaca tttttatggc tggtcattcg actcacgtca cgtacaagaa ccagcaaata       660
     acgtgccggc attgtggacg acaggttcat tacggagcga agtgtgcgga agcggtgcaa       720
     attatcaatt cacagaggag cgtcaatact cggcttcaga gaggttcgtc gggctacgcg       780
     gatgtattgc aaggtcaagg tcaaaagaaa cgagcagcgt cagatgattg gattggaccg       840
     aacatggtta acctgaactc gttaaacaag aagtgggcct cccgatcccc catcacgacc       900
     actgatcaac cgtcaacatc atcaacagac aacgtaacag aacagaaacc agactcagaa       960
     ttcaaaattc ccagcaaaac agcacgcgtt tccaacatca tcggtgggag tgatgaaatg      1020
     gccaacgcaa gcgaaggacc gtcagacaac accaacatca atcagtttga tgtgttgatg      1080
     tccgaagacg acgacaaatc accatatttc agtgatagtt cgatggtatc ggattcatcg      1140
     attacaggaa agcggaaatc cagaaagcga aacagtaaga cgaaatgaat actaacacta      1200
     cttataacgt aaacaatgga ttgatatcat acagtattgc gacaatcaat ttgaacaaca      1260
     tttcaaacac taataagatc aactcgttga agaccttcgt taatttgatg gatgtggatg      1320
     taattttatt tcaagaggtg gagagcgaaa atattgagtt gtatggtttt gaaattgtct      1380
     acaatgtcaa tcatgataga cgaggaactg caatagcata caaggctcat atccaatgta      1440
     cagcggtcga acgaagcata gattccagag tgattaagat caaattgaat aacaacatcg      1500
     tcatttgtaa catttacgca ccttctggtt caagcaatcg atcaagcaga gaatattttt      1560
     tcaatgaaat cgttccatat tatctcagag gttcaaatga attcatgatc ttgggaggtg      1620
     atttcaattg cgttgaaaca gccaaagata gtagtaatga ctatactaat aatttcagcc      1680
     ctatgctaaa aaggctcaga caagcattac agcttgaaga tgcgtgggaa gtaaaattcg      1740
     gaagtaacaa ggaatattcc ttcattcgag gagggttcgg atcgcgaatc gacaggattt      1800
     atgtttctca atcgttatcg ttaaatgtgg ttgatgcaaa gtaccaagtt acttctttca      1860
     cagatcacaa agcccatatt gtcaaggtaa agctaccttc tctgggaaaa ccttttggca      1920
     gaggtgtttg gcattacaag tccctagttc ttgaagatga caataataaa gaagagttca      1980
     agcaaaaatg gcgttactgg gtatcacagc gacaatatta tcgtaactgg gtagtttggt      2040
     gggcagaata tgcaaaaccg aaggttgtgt cgtttcttag atggaaatct cgaaatatgt      2100
     acaacgattt taacagcaac atggaatttt ggtattatgc tctacggcgc gcctataatg      2160
     agtatctaac tgatccgctt caaatatctg agataaatcg tatcaaagga aaaatgttaa      2220
     aattgcaaca tgattttagt gcgttcttgt caagaaataa tgagattcat ctaaaccacg      2280
     aaccgttgtc aatttttcat ttagaacaaa aacaccaaaa aaagaataaa acacgtataa      2340
     aatcatttgt aattgatgga agattagaag aaaatcaaga aaatataaaa tcccatgttg      2400
     ttgaacaaat tgaaaattta tttaaatcag aagaagttgc tacgaacaat gattttaagc      2460
     cggggagaag tattccgaat gactttttgg agaacgagga attaatggaa gagatagatg      2520
     aagacgaagt attctgcgcg ataaaaagta gtgcttctag gaaatcacca ggcatggatg      2580
     gactcaccaa agaattttac atggactgtt ggaatattat taaagttgaa ataacggctg      2640
     ttttgaattg ctttctacgt ggaaatattg aaaagaaaat gtgcgatggc atgatagtgc      2700
     taatcagaaa aaagaattct ggaaatagca tcgatggata tcgaccaata acattgttaa      2760
     acttcgatta taaaatagta tcgcggattt tgaaattcag attaaatcgt ttaatgccat      2820
     ttctggtgag ctgcaaccaa aaatgttcaa atcctagaag gaatattttt gaggcaacat      2880
     gttcgattcg agatcgcatm gttgaacttc agcataaaaa aaggaaagca ttattagttt      2940
     cgtttgatat ggaaaaggcg ttcgatagag tggaaccaag atttttattt aaaactttgc      3000
     gagaaatgaa tgttagtgat agatttgtta gttttctcga aaaagtcagg gatgtttctt      3060
     tctcgaaaat tctgattaac ggtacactat cccgagaggt gaaaatcgaa aggtcagtaa      3120
     gacagggtga tcctttgtcg atgcacctat ttgttttata catagagcct ttattgcaaa      3180
     agattgtagc ttcctgctca gatagtttag atttaatcaa cgtgtatgcg gatgatttat      3240
     ctttagttgt aaataaccta aatgatttgg aaattgtaaa gacacacata ataaattttg      3300
     gtatgatttc aggagcaaga ttgaatgtta gtaaatcaaa agctgtagaa attggttttg      3360
     gtagcacgcc actgccaact gtgccatggc tcaaagtcga agaaaggatt aaggtgttag      3420
     gtatatattt ttcaaattca ttgaaaaaga tgacagttga taattggaca aatgcaatta      3480
     gtagtgttac attctctatc aatataaatc aagccagaaa gttaaacctt atgcagaagg      3540
     tatttttcct taacaccttt gccttatcga aagtttggta cgttgcatca acgatcaaaa      3600
     taaataacaa attttgtgca aaattgaaaa gtctaatagg aacttttttg tggcgaggat      3660
     atggagcaag agtcgctttc aatcagttaa ttttacccaa agaccgagga ggcctgtcat      3720
     tgcacgatcc tgaaagtaaa tgtaatgctc ttatcgttaa aaatttcatc aagttgaatt      3780
     atgataattc tttcatagtc aatcagtttc ttaatcaact ctcaaatgat gcgaatattc      3840
     cagccaatta tgattacatc aaattgcttg caaatgagat cccgaattta cctccagcga      3900
     ttagaaataa tatttcatct aaagctgttt atgatattca aattacaaaa aagccaaatc      3960
     cggaaattac ttctaaatat gcaaacaaaa attggagcaa agtttggcgc aatcttttca      4020
     ctccgaagat tatgagttct gaagcaagat cagcgtacta tttattaata aacgaaaaga      4080
     tacccaatat ggaatcattt cacagacacg gtagagtatc aacaaacttg tgcagaagtt      4140
     gtaatgttgc gattgagaca attccgcata tttttgcgga gtgtgatagt tcaaagtcat      4200
     tctggaattt atgctwttca aaactaaagg gtattaatgc caatgagatt caacgaatga      4260
     actttaataa ttttaaagtt cccgaattag gaagattcag tagagcagaa aggaataagg      4320
     ttttagaaat gttcagtaaa ttcgtaatgt acataaacaa aacacttgcc aataatcgaa      4380
     gccttgtaga attaaatgat atactaacaa actgaaatag ttaagcacta acacaatgaa      4440
     gactgtaaaa tagttataag tatcaataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      4500
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa                                       4530
//
ID   L1-47_AAe   repbase;    DNA;    INV; 4420 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   L1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-47_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4420
RA   Jurka J.;
RT   "L1 non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1402-1402 (2011).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           399..1163
FT                 /product="L1-47_AAe_1p"
FT                 /translation="MMEDGAVEVRLFDLSNDISNEQIAEFLSEYGDVLNVR
FT                 DLLWDERSAFAGVKTGVRIARMVVKKNIPSLVTIRGEDSAVGYKGQRQTCL
FT                 HCQEFVHVGIPCVQNKKLLVQKLSADLSYANVAKQSALPKPAKPNNPPARA
FT                 PESRVQQNPPRPTTIKPSESRSVTQPTTVQTINAMPPPAVKATGAPATIQF
FT                 TPFLNPSGNINPLRKSDGNETDSSQASLGSNSSRRLRSKRSPPGKKMRHSD
FT                 SNEHIRGSGDDMQQ"
FT   CDS           1166..4342
FT                 /product="L1-47_AAe_2p"
FT                 /translation="MEHTSVNIGTININTITNTTKINALRTFIQTTDLDIV
FT                 FLQEVENEQLALPGFNIVCNVDHARRGTAIALKQHIKFSHVEKSLDGRLIA
FT                 LRVHNTTLCNVYAPSGSAQRAERERFFNNTVAYYLRYRTDHIVLGGDFNSV
FT                 IRQRDATGSNASPSLQSTVQQLRLLDVWQQLRQHESGYTFITHNSSSRLDR
FT                 LYVSSGLREHLRATAVHVVCFSDHKAVTTRLCLPLPDRAPGRGFWSLRPHL
FT                 LSDENIEELQTSWQYWTRQRRYYTSWMQWWLSCAKPKIKSFFRWKSKIVYD
FT                 AFYREQQRLYEVLRHAYDNYHDDRSMLIRINRAKAEMLSHQRNFTEMFVRV
FT                 NETYVAGEPISTYQLGERTRRRTTIEQLRNERDEIIDDCDAIRDHMTEYFT
FT                 NLYARGRVDEIDGTGFESGRVIPENDPVNEACMSDITTVEILSAIRTSASK
FT                 KSPGPDGLPKEFYLRAFDVIHRELNLVLNEAINSNFPTQFVDGVIVLVKKR
FT                 DAGDSARSYRPISLVNYDYKILARILKARLENVMRTHNVLTESQKCSNGKR
FT                 NIFQATLAIKDKIAQLKACRQTAKLIGFDLDHAFDRVDQSFLFNTMRGMGF
FT                 NTSLVDLLSNIAAASSSRLLINGHLSASFPIQRSVRQGDPLSMHLFVIYLH
FT                 PLLRRLEHVCGGDLIVAYADDISAIVSSVEKLNAMRDLFRCFGRVAGAVLN
FT                 ENKTTAIDVGLIDYPITVPWLRTENTIKILGVYFCNSVRGMVTLNWDKIVT
FT                 NFSRQVWLHSMRCLTMHQKVTLLNTFISARMWYMAAHLTPTAAHIAKLTAT
FT                 MRRYIFRGVPATVPMQQLARSKVAGGVKLHLPTFKCKSLLINRHLNEIESL
FT                 PFYNSYINPTNPPQPFSISDLPCLKLILDNLANFPFQIRQHPSADLIHRFY
FT                 VEQTERPKVETEYPNANWCRVWANIWMRGLSSSQKSALYMWTNQKIPHRRL
FT                 LFKMRRTDGEQCLYCAERSEFLQHKFFSCPRVNDAWRVLQRRLLAITGRRS
FT                 FVCDELLRPSLEWTSVTTRRTVLKTLVNYISFIENSNLRIDVDALRFALEV
FT                 EV"
XX
SQ   Sequence 4420 BP; 1240 A; 1112 C; 1008 G; 1054 T; 6 other;
     cagttagcgc tcaacttccg agccgatcag tcgatctatc gaggagcgaa tttcggaagt        60
     cgttcacgga ctatctcgta cgtttttgtc gatcgctatc accgccacaa gtatcacgtg       120
     cwgtgacgmg tgccgtgttc cgcgatgccg cgccgcgaaa acacgtttcg cgtcgattac       180
     tcgcagtttc cgaagcagct ttcccacgat gaaatmcaca aattcgtcgg gaaagaactc       240
     ggtctcacgc gagaaaacgt kcttctcctc cagccgagcm ggcggctggg tgcaccttcg       300
     tggaggtcaa caamctcgag ctcgccgagg cgatcgtcca gcagcacgac aacaagcacg       360
     agttcgtgtt tgatggtaag atctacaagc tgcgcatcat gatggaggac ggagctgtgg       420
     aagtacgctt gtttgatctg tccaatgata tttcaaacga acagatcgcc gaattccttt       480
     ccgagtatgg tgacgttctt aacgttcgtg atttgctgtg ggacgaacga tccgcctttg       540
     caggcgtcaa aactggcgta cgcatcgctc ggatggtagt aaagaaaaac attccttcac       600
     ttgttacgat tcgtggtgag gactcggcgg tgggctacaa ggggcagcgg cagacgtgtt       660
     tgcactgcca ggagtttgtg catgttggta taccatgtgt gcaaaacaag aaactgctgg       720
     tgcagaagct ctcggcagac ctctcgtatg caaatgtagc gaaacagtca gcgttgccga       780
     aaccggcaaa gccgaacaat ccaccagcgc gagcaccgga gtcgcgagta caacaaaacc       840
     caccacgtcc tacgacaatc aaaccgagcg aatcccgatc ggtgacccag ccgacgacag       900
     tgcaaacgat caacgcaatg cctcctcctg ccgtaaaagc gaccggagca ccggctacta       960
     ttcaattcac accgttcttg aatccgagcg gcaacatcaa tcctctacga aaatctgatg      1020
     gcaacgaaac cgacagctct caagcatcac tcggctccaa tagcagccga cgattacgca      1080
     gcaaacgatc gccaccgggg aagaagatgc gacacagcga ctctaacgag cacattcgag      1140
     gttccggaga tgatatgcaa cagtaatgga gcacaccagc gtaaatatag gcactatcaa      1200
     tatcaacacg ataaccaaca caacgaaaat caatgccctc cgtacattca tccaaacaac      1260
     cgatttggac atcgttttcc tgcaggaggt ggagaacgaa cagcttgcct tgcccggttt      1320
     caacatcgtt tgcaacgtcg atcatgcgcg gagaggaacc gcaatcgctc tcaaacagca      1380
     tataaaattc tcgcacgtcg aaaaaagcct ggatggaaga ttgatcgctt tgcgtgtgca      1440
     caataccact ctgtgcaatg tgtatgcccc atcgggttca gctcagcgtg cggagcgaga      1500
     acgctttttc aacaacactg tagcatacta cctacgatat cgcaccgatc acatcgtact      1560
     cgggggcgac ttcaattccg taattcgtca gcgtgacgcg acgggatcca acgcaagccc      1620
     ctctctccag tccaccgtac agcagcttcg tttgctcgat gtgtggcaac agcttcgaca      1680
     acacgaatcg ggatacacat ttatcacgca caattcttcg tccaggctcg atcggcttta      1740
     cgtcagctcc ggattacgag aacatctgag agcaacagct gttcatgtcg tttgcttctc      1800
     ggatcacaaa gccgttacta cgagactatg tcttcctctc cccgatagag cacccggcag      1860
     gggtttctgg tccctccgtc cccatcttct gtcagacgaa aatattgaag aactgcaaac      1920
     aagttggcaa tattggaccc gccaacgccg atactacacg tcatggatgc aatggtggtt      1980
     atcatgcgca aaaccgaaaa ttaaatcatt cttccgatgg aaatcaaaaa tcgtttatga      2040
     tgcgttctat cgcgagcaac agcgcctcta cgaggtattg cggcatgcgt atgacaatta      2100
     ccacgatgat cgttccatgt tgatcagaat caatcgtgcg aaagcagaaa tgctctccca      2160
     tcaacgtaat ttcaccgaaa tgtttgtgcg tgtcaacgaa acgtacgtgg cgggagaacc      2220
     aatatctacc taccaacttg gagaaagaac acgacgaaga acgaccatcg agcagctacg      2280
     aaacgagagg gacgaaatta tcgacgattg cgatgcgata cgtgatcata tgactgagta      2340
     ttttaccaac ttgtacgcac ggggccgtgt agacgaaata gatggaacgg gcttcgaatc      2400
     tggaagagtc atccccgaaa atgacccggt caatgaagcg tgcatgagcg acatcacgac      2460
     tgttgaaata ctctctgcaa tccgaacaag tgcatcgaaa aaatccccag gtcccgacgg      2520
     gcttcctaag gaattttact tgcgtgcgtt cgatgtaatt caccgtgaat tgaatttagt      2580
     attgaatgaa gcgatcaatt caaacttccc gacacaattt gttgatggag taatagtgtt      2640
     ggtgaagaag cgcgatgctg gggactccgc tcgatcatac agaccaatca gtttggtcaa      2700
     ctatgattat aaaattctag ctcgaatact gaaagcaagg cttgaaaatg tgatgcgcac      2760
     ccacaacgtc ctaaccgaat cacaaaaatg ctccaacggt aagagaaata tatttcaagc      2820
     cactcttgca ataaaagaca aaatcgcaca gttgaaagca tgtcgacaga cggccaaatt      2880
     aattggcttc gatctcgacc acgcatttga ccgtgttgat caaagctttt tgttcaacac      2940
     catgcgtgga atgggattca acacatcatt ggtggatctt ttatccaata tagctgcagc      3000
     ttcttcgtct cgtttgctaa ttaatggcca tctctcagca agcttcccga tccaacggtc      3060
     ggtccgccaa ggggatcccc tatcaatgca cttgtttgtg atctacctac atcccctcct      3120
     acggcggctg gaacacgttt gtggtggtga tttgatcgtt gcttacgcag acgatatcag      3180
     tgcgattgtt agcagtgtgg agaagttaaa tgcgatgcgt gatctgtttc gttgcttcgg      3240
     acgtgtagcc ggtgccgttt tgaatgaaaa caaaacgact gcaatcgatg tcggcctgat      3300
     tgactaccct atcactgtgc cgtggttacg cactgaaaat acaatcaaaa ttcttggtgt      3360
     gtacttttgc aactcggtac ggggaatggt cacgttaaat tgggacaaaa tcgttaccaa      3420
     cttctcaagg caggtttggc tccattcgat gcgctgtttg accatgcacc aaaaagtgac      3480
     cctgttaaat acgtttatat cagcgaggat gtggtacatg gctgcccact tgactccaac      3540
     agctgcgcat attgcaaaac tgactgctac gatgcgaaga tacatttttc gaggtgtgcc      3600
     tgcgaccgta ccgatgcagc aactggcgcg cagcaaagtg gccggtggag tgaaactgca      3660
     tctcccaacg tttaaatgca agtctttgct gattaacagg catctaaacg agattgagtc      3720
     ccttcctttc tacaattcct acatcaaccc aacaaatccc ccccaaccct tttccatctc      3780
     agatcttccc tgcctcaaat taatcctcga caatctagca aattttccct tccaaatccg      3840
     ccaacacccc tccgccgatc tcatccatcg cttctatgtg gaacaaacgg aaaggcccaa      3900
     agtggaaact gaatacccaa acgctaactg gtgtcgtgta tgggcaaaca tctggatgcg      3960
     tggactctca tcatcgcaga agtctgctct atatatgtgg acaaaccaga aaataccaca      4020
     ccgacggcta ctgttcaaaa tgcgacggac agacggggag caatgcttgt actgtgctga      4080
     gcgaagtgaa ttcctgcagc acaaattttt ctcttgtcct agagttaatg atgcgtggag      4140
     agtactgcag agaaggctgt tggcgataac cggtcgacgc tcttttgttt gtgacgaatt      4200
     gctgcgacca tcactcgaat ggacatcggt aaccacgaga cgaactgtat tgaaaacttt      4260
     agtgaattac atttccttca ttgaaaattc caatttaagg atagatgtag atgcgttaag      4320
     atttgcatta gaagtcgaag tttaatcaat tatgtgaata atttttacta agcatatcga      4380
     ccaataaaca gctttttata acaaaaaaaa aaaaaaaaaa                            4420
//
ID   L1-48_AAe   repbase;    DNA;    INV; 5766 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   L1-type non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-48_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5766
RA   Jurka J.;
RT   "L1 non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1403-1403 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 5' end undetermined. Low-copy
CC   number.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..1882
FT                 /product="L1-48_AAe_1p"
FT                 /translation="MPVNHKLTPLPHRCPTLLPPTPQVSLSPPRMAATAPL
FT                 TSQHHAPPPAPSRSPTSPLLPAFPALPPRHAPSTTSAHPPPVGVTPISSLS
FT                 ETVECASLTSSVRQGSLEVFLSLGRHDVAAAFAFVRITPQLAVSAPAPFIR
FT                 EAIRAAFPLITFEVLPSSFGSLLVRFQSAGDCTAAVSRSPLLHEDVAIFFE
FT                 RHDGRSVKQPVDVLAVLSVHGFPLTFWHEEFIRQAFQVFCSVVEVDWRCTS
FT                 GLDYSSVRVVVRVEEVTSIPADLCIHDSSSGDSFVCQVKLVDSWPLPVDYG
FT                 QHGTLRPYFGWPPHPVLPPPAPTPHRTTPLQPLRHHLSRNLARQLTVVPLA
FT                 TLQPDQSLVTCLARTLLALVLNQPHRLLLPCLPSFPIIIHKNILPLHPAPA
FT                 FSAPFPPFPLTSCSTVAPAIADVEVLSPSPLPPSSLQPDPDHESSARKSRA
FT                 RTKRTADLAAKNKKIAPASRHSVRLRDKEPANYVDMSSKATNLKALKNELA
FT                 NCSNNLKAKVKRHGLLRKCTLNAADLRALAGTIALPALATAELEQALESST
FT                 C"
FT   CDS           2055..5609
FT                 /product="L1-48_AAe_2p"
FT                 /translation="MSSNRLITVISWNTRGLGEDNKCVDVRDVFSSCCPHI
FT                 ACIQETKLSEISAQKFKSFLPASLSGHSFLPADGSRGGIATAWNAAHFTLV
FT                 STSSTTHSLSTVLSYNASDLTFTLTNVYAPADHRYTAEFLGELRSLANLIS
FT                 GPWLVTGDFNLVREPSDKNNDNFNVCLASAFNSAIHDMSLIELPLLDRLFT
FT                 WSNKRTLPVLARLDRTFINGDFESAVPNTSLTSLPHATSDHTPLKITIDTS
FT                 IPKKHCFRFENAWLHDPSFLPAIEPVWSAVTNLAGGATGAFVARLKGTRRV
FT                 AKAWSKNKHTPFLINNCKFIIKLLDLHEELHFLTTGETVLRSLCREKLILQ
FT                 IRARAAYWKQRGKFKVLKEADENTRFHHARASQRLRQNQIRALELDGVRYT
FT                 SHASKAMVLDNHFTALLGAAMDTVWDFDMATLYRGLPKVNLVPLIEPFTEA
FT                 EAWAAIKAMNHNSAPGPDGFGPSFYRASWHIVKSTVMQFLASFHHGDADME
FT                 RINRAYIVLIPKIVGAVAPGSFRPISLQGCPVKIVGKILTSRLQQQVTSLV
FT                 DLDQTGFLKGRSISENFVYATELVQCCYKRKAPTVVLKLDFAKAFDSVSWD
FT                 ALLTVLQARGFPPLWCDWIKLLQVSAKSAVLLNGVPGRWISCKKGLRQGDP
FT                 LSPYMFILVADVLQQLLARDSTIRHPLTADRSCTILQYADDTLIVARADEL
FT                 AMLQLKSILQSFTRATGLDINYNKSTLVPMHVPAPDVTRFVNVLGCAEGAF
FT                 PQTYLGLPLSNEKLNLAAFAPIIASADRYLSGWWASLLNHHGRLTLVNAVL
FT                 DSLPVYAMGALALPPGVIEAIDSRRRAFLWAGEETVSGAKCLVNWERACLP
FT                 RKDGGLGVRDLRLQNTCLLLKLLHRAHNSRDSAWARWLEVEFGGPMSAPDN
FT                 TAAGTHWAALRRLLPDYRLLTTVEVGDGRSTAFWHDCWLSTGPLVDAMPAL
FT                 YSHARRKETSVCNVLSTALRLAFVPRLSTVAARELEQLEALLAGVSLSATP
FT                 DLRLCPWEDMAHKLNSSTVYQAVVTNGQGCEYYKFIWENRAPPKVKFFGWL
FT                 LVQNRIQTKDNLLKKHCVENDICELCLSAVESSVHLISGCPFAVGFWARLG
FT                 ISLTDEDASHLWCVRSPGHLPAAHFNVFLLLCCWRLWKHRHDVVFRSLSLR
FT                 AMSVLWLAVVMMQNCGLVGSPLMIVM"
XX
SQ   Sequence 5766 BP; 1170 A; 1724 C; 1290 G; 1582 T; 0 other;
     cagagtgcac ttagaaatat aaaatccaaa tttattattc cctctcgtcc gggacgtgct        60
     attgctcggc gctgttgaag cccgctcatc cacctctccc tctcgtcgct cccccacaaa       120
     aataaaacag ttcgcctgct tccgctgctt cgccactgat caccaaattg ctgcttgccg       180
     ggatcccatc cgctgtcgct cttgtcgacg ccagggtcac cgttgtcgtg agtgccccat       240
     gccagttaac cataaactaa cccccttgcc ccaccgctgc cctacgcttc tccctcctac       300
     gccgcaggtc tctctgtcgc cgcctcgtat ggctgctaca gctcctctaa cctcccaaca       360
     ccatgcccca ccaccggctc cctcccgctc ccctacttcg cctcttctcc ctgcattccc       420
     tgctttacca ccgcgccacg ccccttccac cacctccgcc catcctcctc ctgttggtgt       480
     tacccccatc agttccttgt cggaaactgt cgagtgtgcc tccctgacta gctcggtccg       540
     ccagggatcc ctcgaagttt ttctctctct cggccggcac gacgtggccg ctgcattcgc       600
     atttgttcgt ataactccgc aattggcagt gtctgccccg gcaccattta ttcgggaggc       660
     gatccgtgct gctttcccgc tcatcacctt cgaggttctc ccctcgtcgt tcggatcgtt       720
     gctggtgcgc tttcagtcgg caggtgattg tactgctgct gtgagtcgct cccccctatt       780
     gcatgaggat gtggcgatct tcttcgagcg ccacgacggg aggagtgtca aacagccggt       840
     tgatgtgctt gcggtcttgt ctgttcatgg gttccctctg accttctggc acgaggagtt       900
     catccgccag gcgttccaag tattttgctc agtcgtggaa gtcgactggc gttgcacctc       960
     gggcctcgac tactcgtctg ttcgggttgt ggtccgcgtg gaggaagtga caagcattcc      1020
     agcagacctt tgcattcatg attcttcatc tggggattcc ttcgtttgtc aggtgaagct      1080
     ggttgattcg tggccgctgc cggtggatta cggccagcat ggcacgctcc gcccctactt      1140
     cggatggcct ccccatcctg tgctgccgcc acctgccccc acgccccacc gcacaacgcc      1200
     cctgcagccc ctccgccacc acctatctcg caaccttgcc cgccagctca cagtcgtccc      1260
     cctcgccacc ctacagcccg atcagtcgct tgtgacgtgc ctcgcccgca cactactggc      1320
     tctggtcctt aaccagcccc accgccttct gctcccctgc ctaccatcct tccccatcat      1380
     aatccacaaa aatatcctcc ccctgcatcc tgcacccgcc ttctcagctc cattccctcc      1440
     ctttcccctc acatcatgct cgactgttgc gcctgcgatc gctgacgttg aagtgctctc      1500
     cccctccccc ctccccccct cctccctgca acctgaccca gaccatgaat cttcagcaag      1560
     aaaatctcgc gcacgcacca aacgtactgc tgacctcgca gccaaaaaca agaaaatagc      1620
     tccagcttca cgccacagtg tccgtctgcg ggataaggaa cccgcgaact acgtggacat      1680
     gtcctctaag gcgaccaatc tgaaagctct gaagaacgag ctggcaaact gctccaataa      1740
     tctcaaggca aaggtcaagc gccatggtct gctgcgcaaa tgcactctga atgctgctga      1800
     cctgagggcg ctcgctggca ccatagcgtt gccggctctg gctactgctg aactggagca      1860
     ggcgctggaa agttccacat gttagaattc aacttctgtg ctatggtgag gctaggctca      1920
     catcctccta gcaagttatc cccctgtatt tcctattatg tttgtttctc ctcagactta      1980
     atgtatgtcg ctcttttacc tccagttgct cttcacattc ctcttgttat ctggatgttc      2040
     tgctggtgtt aatcatgagt tcaaatcgtc ttataactgt catctcctgg aatactcgtg      2100
     gcctcggtga ggacaataag tgtgtcgacg tgcgtgatgt tttttcctct tgttgtcccc      2160
     atatcgcttg cattcaggaa acgaaactca gtgaaatctc tgctcaaaag tttaaatcat      2220
     ttcttcctgc ctccctttct gggcacagtt tcctgccagc tgatggctct cgtgggggga      2280
     ttgcaactgc ctggaatgct gctcacttta ccctcgtatc cacttccagc accacacact      2340
     ctctctcaac agtcctctcc tataacgctt ctgatcttac tttcacgctc actaacgtgt      2400
     atgctcccgc tgatcaccgc tacaccgccg aattccttgg tgaacttcgt tcccttgcca      2460
     acttgatctc aggcccctgg ttggtcactg gcgattttaa tcttgttcgt gagccaagtg      2520
     acaaaaataa tgacaacttc aatgtctgct tggcgagtgc cttcaacagt gcaattcatg      2580
     acatgtcgct cattgagctt cccctccttg atcgcctctt cacttggtcg aacaagcgca      2640
     cccttcctgt tcttgcgcgt cttgatcgca ctttcataaa tggtgatttt gaatcagctg      2700
     tccccaacac ttccctcact tctctccctc acgctacctc tgaccacact cctcttaaaa      2760
     tcaccataga cacttctatt ccaaaaaaac attgctttcg gtttgagaat gcttggcttc      2820
     atgatccctc cttcctccct gctatagaac cggtctggtc tgcggtcact aatcttgcag      2880
     gtggtgccac aggtgcgttc gttgcaaggc taaagggcac acgtcgtgtc gctaaggcat      2940
     ggtcaaaaaa caaacacaca ccattcctta ttaacaattg caagtttatt attaaactac      3000
     ttgatctgca tgaggagttg catttcttga ccacaggaga gacagtcctc cgctctcttt      3060
     gtcgtgagaa gctcatactt cagatcagag ctcgtgctgc ctactggaaa cagcgtggga      3120
     aattcaaggt gcttaaagaa gctgatgaaa atacaagatt ccatcatgcg cgggcttcac      3180
     aaaggctacg tcaaaatcag ataagggctc ttgagctgga tggtgtccgc tacacaagtc      3240
     atgcaagtaa agcaatggta ctggacaatc atttcactgc cctcctcggt gcagcgatgg      3300
     atactgtgtg ggactttgat atggcaactc tgtaccgtgg cctcccaaag gttaatctcg      3360
     tgcctctgat tgaaccgttt actgaagctg aggcctgggc agctatcaag gcaatgaacc      3420
     ataatagtgc ccccggtccg gatggcttcg gtcctagttt ttacagagct tcctggcata      3480
     tagtgaagtc cactgtcatg caattcttag cttccttcca ccatggagat gctgatatgg      3540
     aaagaattaa tagagcatac attgtgttga tcccaaaaat tgttggtgca gttgcgcctg      3600
     gatcctttcg tccgatttca ctccaaggtt gtccagtaaa gattgtgggt aaaattttga      3660
     catctcgcct ccaacagcaa gtcacatcgc ttgttgattt ggaccagact gggttcttga      3720
     aaggacgctc aatttctgaa aattttgtct atgctactga gcttgtccaa tgctgttaca      3780
     aaaggaaagc tccaactgtt gttctgaaac ttgactttgc caaagctttt gatagtgtaa      3840
     gctgggatgc tctactcact gttctacagg cacgtggctt ccctcctctt tggtgtgact      3900
     ggattaagct actgcaagtc tctgctaagt cggctgtcct tttgaatggt gttccgggca      3960
     gatggatttc ttgcaagaaa ggccttcgtc aaggtgaccc gctgtcaccc tacatgttca      4020
     tactagttgc tgatgtctta caacagctgc tggccagaga tagcaccatt cgacaccccc      4080
     ttacagctga ccgttcatgc acaattctcc agtacgcaga cgatacactg attgtggcaa      4140
     gagctgacga gctggctatg ctgcagctaa agtcgattct tcaaagcttc acccgtgcaa      4200
     caggtctgga tataaactac aacaaaagta cgctggttcc aatgcatgtg cctgctcctg      4260
     atgtcactcg attcgttaac gttcttgggt gtgcagaagg tgcgttcccg cagacctacc      4320
     ttggtctccc tctctctaat gagaaattga accttgcagc ctttgctccc atcattgcta      4380
     gcgctgaccg ttatttatct ggatggtggg cgagtcttct taatcaccat ggcagactta      4440
     ctcttgttaa tgcagtcttg gacagcttgc ctgtttatgc aatgggggct ctcgccctcc      4500
     ctccaggcgt gattgaggcc atcgactcta gacgtcgggc tttcctatgg gccggggaag      4560
     aaacagtctc tggtgcgaag tgtcttgtga attgggaacg ggcatgtctc ccgagaaaag      4620
     atggcggact gggtgttcgt gatctccgct tgcagaatac ctgtctgcta ctgaagctcc      4680
     tccatcgtgc acacaactca cgtgactcag cttgggcccg ctggttagaa gtggaatttg      4740
     gaggccccat gtctgctcca gacaacacgg cagctggtac tcattgggct gccctccgac      4800
     gccttctgcc tgactatcgc ttacttacca cggtggaggt gggcgatggt cgctctacag      4860
     ccttttggca cgactgctgg ttgtctacgg ggcctcttgt ggacgccatg ccggcgctct      4920
     actcgcacgc ccgacgcaag gaaacctcgg tctgcaatgt cctgtctaca gcccttcgcc      4980
     ttgcatttgt ccctcgcctc tccaccgtgg ctgctagaga attggagcag ctggaggcgc      5040
     tccttgctgg tgtatccttg tctgcgactc ctgatctccg gttgtgcccg tgggaagaca      5100
     tggcacataa actcaattca tcgactgtct accaagctgt tgtgactaat ggccagggat      5160
     gcgagtacta caagtttatc tgggaaaacc gtgctccccc taaagttaag ttctttggct      5220
     ggctattggt gcaaaacagg attcaaacca aagataatct tctcaaaaaa cactgcgtgg      5280
     agaatgatat ctgtgaactt tgcttgtcgg ccgtggagag ctcagtgcat ctgatttcgg      5340
     gctgcccttt tgctgttggc ttctgggcgc gactaggaat atctctcaca gacgaagacg      5400
     cgtcacatct ttggtgcgtt cggtccccgg gtcacttgcc cgctgcacac tttaatgttt      5460
     ttctcctctt gtgttgctgg cgtctctgga agcaccgcca cgatgttgtt tttcgctctc      5520
     tctctctccg agctatgagc gtcttatggc tggctgtcgt gatgatgcag aattgtggtc      5580
     ttgtaggctc ccctctaatg atcgttatgt aacccttgca tgggtttcga tattctcttc      5640
     gtcaatcccc tctgtaacaa cttaaccgac atgtaactaa ctcatgtatg agcctttatg      5700
     ttggcaatga aaaggtgggg tatctcgccc cccccccccc ccccccccga atttctcaaa      5760
     aaaaaa                                                                 5766
//
ID   L1-4_CQ     repbase;    DNA;    INV; 4520 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4520
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 134-134 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           157..1248
FT                 /product="L1-4_CQ_1p"
FT                 /translation="MNSQNNRENTFRVDFSNLPKKPSVKEVHQFLARDLGL
FT                 PREKTKRVQINHVQNCVFVKTADLETAEQIVEDHDGKHVREVNKKKYTIRI
FT                 TMEDGCTNVKLHDLTEDVSDQQIKRFMSQYGDVMSVTELLWSDDLDYHGIS
FT                 SGIRSVKMVLKRPIKSYVTIQGQCAYVKYAGQQSTCRHCGEYVHIGIPCVQ
FT                 NKKLLVQRVSVNERLKPGAKESFASVLKSGSTDTRQDDNISSSDDEERDSA
FT                 AMSEDDDEYTVVRYGKGKHPKLPKPIKSKPRQETIKVNPIATPGGTPLDAV
FT                 VEQETDKEESVFKTPLLLPGKHKRNDGNDTDTSTASTASNGKRGPGRPRKT
FT                 KPTDVDTQPQASPSADEPMQP"
FT   CDS           1255..4446
FT                 /product="L1-4_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDFLTYNIASININTISNHTKLNALNNFVRTLNLDIV
FT                 FLQEVENDQLAIPGFNLVCNVDQERRGTAIALKQHIRFSHVERSLDGRLIC
FT                 LRVNETTTLCNIYAPSGTQHRAYRENFFNGTLAHYLRQATEYVILGGDFNS
FT                 VIHTKDATGDNNYSLALKNATQQLQLLDAWDTLKPNRVEFTYVTYNSASRI
FT                 DRFYVSSNLRPQLRDADVHVCSFTNHKALTTRICLPNLGREPGRGFWSIRP
FT                 HILSADNIEEFQEKWTYWTRHRRNFTSWIQWWVSYVKPRIRSFFRWKSREK
FT                 YMEFHQQHQELYAQLRRAYDAYYQDRTVLSTINRIKSEMLLLQRRFSDTFY
FT                 RSNETRVAGEPISLFQLGERQRKRTTIEALDVEENTLNSSAEIEQHVFGYF
FT                 RQLYAEEQPEIADEFACDRAVSAACPSNASCMDDITTDEIFQAIKSSAKNK
FT                 SPGSDGIPLEFYAKTFDIIHRHLNLILNEALRGNIPPEFVDGTIVLVKKKG
FT                 AGSTIKSYRPISLLNTDYKLLSRILKCRLDRVMRDNQILTTSQKRSNGDKN
FT                 IFQATLSLKDKVAQLKERRLFGKLVSFDLDHAFDRVDRGFLMRTMRALGIN
FT                 PRLVELLDKIGRLSTSRVLVNGHLSPSFPIGRSVRQGDPLSMHLFVIYLHP
FT                 LIKRLEQICVGSNDLVVAYADDVSIITTCAERIERVKEQFENFGRSAGAKL
FT                 NVRKTISIDVGYINNNNRLAVPWLQTADKVKILGIVFVNSVRLMGKLNWVP
FT                 LVGMLTRQLWLHRMRTLTLQQKVVLLNTFITSKLWYVASVLAITKADVARL
FT                 TRLMGSFLWAGQCIRVPMQQLALPVELGGLNLHLPAFKCQALLVNRHLREI
FT                 ENLPFYNSFVSTTRNPPNLRIVPTNCPCLKTVCSELPYLPSALQANPSANL
FT                 LHAHYLNKIDKPKVVLENPTANWNRIWRNIAAKHLTSFERCHYYLLVNRKL
FT                 SNQRLLHRMQRADSDMCPNCNNEPEDIPHKISTCPRVAAAWTVLQRRLRNI
FT                 AQNRNISLTHLLQPTLLAIRRSVKVKVLKTFIQFVIFVSKDNNVIDINELE
FT                 FHLDTEV"
XX
SQ   Sequence 4520 BP; 1271 A; 1201 C; 1050 G; 995 T; 3 other;
     tcagttagcg tgcaaccacc gtggcatgca gacgcatttc atactgtgtg gaacttgaga        60
     ctatcgaaat tcgcattttc tacacgcttt cgtttttttc acgaatccgc cactcggtgg       120
     ccgtcgcgtt kcggtccgcg gttcttgtga ttcaccatga attcacaaaa taatcgcgaa       180
     aacacgtttc gagtcgattt ctcgaacctt ccgaagaagc ccagcgtcaa ggaagtacac       240
     cagtttctcg cgcgtgacct tggccttcct cgggagaaga caaagagagt gcaaatcaac       300
     catgtgcaaa actgtgtgtt tgtgaaaact gccgaccttg aaacggctga acaaattgtc       360
     gaagaccacg acggcaaaca tgtgcgcgaa gtgaataaga aaaagtacac gatccgcatc       420
     acgatggaag atggatgcac caatgtgaaa ctacacgact tgacggagga tgtctccgac       480
     cagcaaatca agcgtttcat gtcccagtac ggggatgtga tgtcggtcac ggagctgctg       540
     tggagtgatg atctcgatta tcacggcata tcatcgggta ttcgctcggt gaaaatggtc       600
     ctgaaacgcc cgattaagtc gtacgtgaca atccagggtc aatgtgccta cgtaaaatat       660
     gcgggccaac aatccacgtg tcgccactgt ggcgagtacg tgcacattgg cattccatgt       720
     gtacaaaaca aaaagctcct mgtgcaacgg gtgagcgtga acgagcgcct aaaaccaggt       780
     gcgaaggaat ctttcgccag cgtgctgaaa tctggttcaa ccgacaccag acaggatgac       840
     aacatatctt ccagcgatga cgaagaacgc gactcagcag cgatgtccga ggacgacgac       900
     gaatacactg tggttcgtta cgggaaaggc aaacatccaa agttgcctaa accgataaag       960
     tctaaacccc ggcaagaaac catcaaggtc aatcccattg ctactcccgg tgggacacct      1020
     ctcgatgcgg ttgttgaaca ggagacagac aaggaagaat cggttttcaa aacgccacta      1080
     ctactgccag gaaaacacaa acgaaacgat ggaaacgaca ctgatacttc tacagcttcc      1140
     acggccagca atggcaagcg gggtccgggt cgtccacgga aaaccaaacc aaccgacgtt      1200
     gatacacaac cacaagcatc gcccagcgct gacgagccca tgcaacccta aaaaatggat      1260
     tttttgacct acaatatagc ttctataaac atcaacacaa tctcaaatca caccaaactc      1320
     aacgcactca acaactttgt cagaaccctc aaccttgaca tcgtgtttct acaagaagtg      1380
     gagaacgatc agctggctat tcccggattc aacctggtgt gcaacgtaga tcaagagagg      1440
     agaggaacag cgatagcgct gaaacagcac attagattct cacacgtgga gagaagccta      1500
     gacggtcggc taatctgtct tcgggtcaac gaaacgacta ctctctgtaa catttacgct      1560
     ccgtcgggca ctcagcatcg agcataccga gagaatttct ttaatgggac ccttgctcac      1620
     taccttcggc aagctacgga gtatgtcatc cttggcggtg atttcaactc cgtaatacac      1680
     acaaaggacg ctacggggga taacaactac agcctagcgc tgaaaaatgc tacacaacag      1740
     ctgcagctgt tggacgcctg ggacactttg aagccgaatc gggttgagtt cacctacgtg      1800
     acgtacaact cggcctccag aattgaccgt ttctatgtga gctctaacct ccgaccccag      1860
     ctcagagatg ccgatgttca tgtctgctcg ttcaccaacc acaaagccct aaccacccgg      1920
     atctgcttgc cgaatctcgg aagggagcca gggagagggt tctggtcaat ccgtccccac      1980
     atcttgtctg ctgacaacat cgaagaattc caggaaaagt ggacctactg gacgcgacac      2040
     agacggaact tcacctcctg gatccagtgg tgggtctcct acgttaagcc aaggattcgt      2100
     agcttcttcc ggtggaagtc tcgggagaaa tacatggagt ttcatcaaca acatcaagag      2160
     ctctatgcgc agctccggag agcctacgac gcatactatc aagatcgaac cgtgctctcc      2220
     acaatcaacc ggatcaagag cgaaatgctg cttctccaga gacgcttttc ggacaccttt      2280
     taccgcagca atgaaacacg tgttgctgga gagccgatct ctctgttcca gctgggagag      2340
     aggcaacgaa aacgtacgac gatcgaggcg ctggatgtgg aagaaaacac tctcaacagc      2400
     tctgcagaaa ttgagcagca cgtgttcggc tattttcggc agctgtatgc cgaggagcag      2460
     ccggagatcg cagacgaatt cgcatgtgac agggctgtat cagctgcttg cccatcaaat      2520
     gcgtcctgta tggatgatat cacgaccgac gagatattcc aagctatcaa gtcaagcgca      2580
     aagaacaagt cccctggaag tgacggtatt ccacttgagt tctatgcaaa aaccttcgat      2640
     atcatccaca ggcacttgaa cctcatcctg aatgaggccc tgcgcggcaa catcccgccg      2700
     gagtttgtcg atggtacaat agtactcgtg aaaaagaagg gtgccggttc aaccattaaa      2760
     tcctatcgcc ctatctcgct ccttaacacg gattacaagc ttctctcacg aatactaaag      2820
     tgcaggctgg atcgtgtgat gcgagacaac cagatcctca ccacatctca aaagcgctcc      2880
     aacggcgaca aaaacatctt tcaagctaca ctctcactca aggacaaggt cgcgcagctg      2940
     aaggagagaa gactgttcgg gaagctcgtc tcgttcgatc tcgatcatgc ctttgatcgg      3000
     gtcgatagag gtttcctgat gagaactatg cgagcgcttg gtatcaaccc gcgcttggtt      3060
     gaactgctgg acaaaatcgg ccggctgtcc acttcccgtg ttctggtgaa cggtcatctg      3120
     tcaccgtcat tcccgatcgg acgctccgtc cgtcaagggg atcctctctc gatgcacctc      3180
     tttgtsatct atctccaccc cctcatcaag cgactcgagc aaatctgcgt tggctccaac      3240
     gacttggttg ttgcctatgc cgacgacgta tcgatcatca ccacgtgtgc cgagagaatc      3300
     gagagagtga aggagcagtt cgagaatttc gggcgatcag ctggtgccaa gctcaatgtt      3360
     cgaaagacga tctccatcga cgtaggctac atcaacaaca acaatcgact cgctgtgccc      3420
     tggctgcaga cagctgacaa ggtcaagatt ctcggcattg tgttcgtgaa ttcagtgcga      3480
     ctgatgggca aactaaactg ggtcccgctg gtaggcatgc tcactcggca gctctggcta      3540
     caccgaatgc gtacactaac acttcaacaa aaagtcgtac tgctgaacac gttcatcact      3600
     tctaaactat ggtacgtagc atcggtgtta gcaatcacga aggcagatgt tgccagactc      3660
     acacggctaa tgggatcatt tctgtgggcc ggccagtgca ttagagtgcc gatgcagcag      3720
     ctcgcgctgc cagttgagtt ggggggtttg aatctgcatc tgcctgcgtt caaatgtcaa      3780
     gctctcctcg tcaacagaca tctacgcgag atcgagaact tacccttcta caactctttt      3840
     gtgagtacta cacggaatcc cccaaactta cggatagttc caaccaactg tccgtgtctg      3900
     aaaacagtct gcagcgagct cccttacctc cccagtgcac tccaagcgaa tccctcggcc      3960
     aatcttctcc acgctcacta cctgaacaag atcgacaagc cgaaagtggt gctggaaaac      4020
     ccaacagcaa actggaatcg aatctggcga aacattgcgg ccaaacacct gacatcgttc      4080
     gagcgctgtc attactacct gctcgtcaac cggaagctgt ccaaccagcg gctgttgcac      4140
     aggatgcaac gggccgactc tgacatgtgt cccaactgca acaacgaacc agaggacatc      4200
     ccacacaaaa tctcaacatg cccgcgcgtt gcagcggcgt ggaccgtgct gcagagaaga      4260
     ctaaggaaca tcgcccaaaa cagaaacatc tctctcaccc atctattgca accaacactt      4320
     cttgcaatta gacgatcagt taaagttaaa gtgcttaaaa cgttcattca gtttgtcatc      4380
     tttgttagca aggataataa tgtaattgac attaatgaat tagaatttca cttagatact      4440
     gaagtttaag ctatttggtc gagtagtttt taagcaatca aaaccaataa aacaatattt      4500
     tataaaaaaa aaaaaaaaaa                                                  4520
//
ID   L1-5_CQ     repbase;    DNA;    INV; 4815 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4815
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 135-135 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >91%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..911
FT                 /product="L1-5_CQ_1p"
FT                 /translation="MGRQNTIRIDYGDLPNKPGMPKVQKFCADKLGLKRGE
FT                 VIRIQNSQTLGVTFVTVADLTLALKVCEEHGKAHELTGSDKKQHQVTITIE
FT                 DGTVLVKLFDLSADVSNADVAKFLERYGEVRDVYEEQLGDDQEFAGAYTGI
FT                 RVAKMVVRENIASWITINGEATKCEYYAQKATCKHCHDYLHVGVGCVQNKK
FT                 LLVQKTFADAVKQPAKPQQPAMPQQPXNPQQPLNPQQPADXQQPLNPQQPS
FT                 TRATAETKRREVEAKRR"
FT   CDS           1130..4372
FT                 /product="L1-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="EAKIQRRQRRRRRGRRGRGIIIFDFSSYNLATININN
FT                 ITNATKVDALRSFIRTLELDIVFLQEVENERLAIPGFNVICNVDHARRGTA
FT                 IALKEHIEYTHVEKSLDGRLIALRVQNTTLCNVYAPSGTALRAERERFFNG
FT                 TLAYYLRHNTDHIVLAGDFNCVLRPCDSTSSNPSAALQTAVQQIRLHDVWL
FT                 KLHPNTHAPTYVVHNAESRLDRVYVSAGLCDQLRTAATHVCSFTDHKALTV
FT                 RICLPHLGGERGRGFWSLRPHLLTQENKEEFAVRWQYWTRQRNRYRTALDW
FT                 WISFAKPKIKSFFKWKSNEVYRVHHARHQQLYAELREAYDAYYQNPAMLTT
FT                 IHRVKAQMLTLQREFSQNFARVNETRVAGESLSTFQLGERRRKKTTITRLK
FT                 NARDEVLQTQPEIEQHVLQYFTELYAADPARAPDIDAGLGCERIIPVDDDA
FT                 NASLVEEITLEEIKLAIITSPKRKSPGGDGLTAEFLNWAFDVIYRELHAVM
FT                 NELLVAPVPAEFSEGTIVLVKKSGRSAENISSYRPISLCNTDSRVFSRIMR
FT                 QRLTRVLQAHNVLTDSQKCGERRSIFQATLALKDRIASLLARKVKGKLISF
FT                 DLDHAFDRVSLPFLYRTMLSLGINPDFVSLLERHFSRAGSRILLNGFLSPR
FT                 FDIKKSVRQGDPLSMVLFSLYMHPLLLALERICVGDLVVAYADDVSVVVTA
FT                 TETIEAINQLFGRFEIAAGARLNRQKTVAIDVGHVEGRPLVVPWLRTVEKV
FT                 KVLGIFFANSIRLMIKLNWDAQVTKVAQLIWMHSMRSLTLQQKVILLNTFI
FT                 TSKVWYLASTLPPYQVHVAKLTATMGTYLFRGLPARIPMQQLARRREDGGL
FT                 KLHLPAIKCKALCINRHLQEIDSLPYYKSFLDRAIPPPTSLPCLKLLCEQT
FT                 PLLPAHIQNFPSSDRIHQHFLDGTERPRVETKQPNLNWRRLWKNISSRRLT
FT                 SGERSALYLLVNEKTEHRRLMHVIQRADGPNCQHCAANEETLTHKFSECPR
FT                 VAAAWAHTQRRLTAIDGGRQQFSFGELFRPVLNGIADGRRARXLKTFISYI
FT                 VFVDXCATTAIDVAALDFELSLVG"
XX
SQ   Sequence 4815 BP; 1223 A; 1426 C; 1264 G; 887 T; 15 other;
     cactcagcgt cgcacctctg ccgcgatcgg acgctaaaag ttttttctcc gccgggcaga        60
     gttcgaccga aacagtgttt tttttctcta ttgtgtgctt ccaatcacgc gtcgcgaact       120
     cgtcgcgagt gtgaaagatg ggaagacaaa atacgatccg catcgactat ggtgacctac       180
     cgaacaaacc gggaatgccg aaggtgcaga aattctgcgc cgataagctc ggcctcaagc       240
     gcggtgaagt gatccgcatc cagaacagcc aaacccttgg tgttactttc gtcacggtcg       300
     ctgacctcac ccttgccctt aaggtgtgcg aggaacacgg caaagcccat gagctgaccg       360
     gaagtgacaa gaagcaacac caagtgacca tcaccatcga ggacggaaca gtgttggtga       420
     aactgttcga cctttcggcg gacgtgtcga acgccgacgt cgccaagttt ctcgagcgtt       480
     acggcgaagt tcgtgatgtt tacgaggagc aactcggcga cgaccaggaa tttgccgggg       540
     cctacaccgg tatccgcgta gccaagatgg tggttcggga gaacattgca tcctggatca       600
     cgatcaacgg sgaggccaca aagtgcgaat attatgctca gaaggccacc tgtaaacact       660
     gccatgacta cctccacgtc ggcgtgggtt gtgtgcaaaa caaaaaactg cttgtgcaaa       720
     aaacttttgc cgacgccgtc aagcaaccgg cgaagccgca acaaccggcg atgccgcagc       780
     aaccgckcaa cccgcagcaa ccgctcaacc cgcagcaacc ggccgaccmg cagcaaccgc       840
     tcaacccgca gcaaccgtca acccgagcaa ccgccgaaac caaacggcgg gaagttgaag       900
     ccaagcggcg gtaagcccaa gccgatccgg acaaccaccc ccmaaaaaaa ccaaccgacg       960
     agggaaacgg ctcatctttt ttgatgcccc caccccagga cgtgcagcca tcgggcagtg      1020
     ggcttacccc cgctggaggt gcaggattta aaaaatctgg ccatggcaaa tccgatggca      1080
     atgacaccga ctcgtcgacc agcagcagaa aacttcgccc aaaaggtaag aagccaaaat      1140
     acaacgaaga caacgacgac gacgacgagg aagacgagga agaggaatta taattttcga      1200
     tttctcgtct tacaaccttg caactataaa tatcaacaac atcaccaacg ccacaaaggt      1260
     cgacgccctg cgaagcttca tccgcacgct agaactagac atcgtttttc tgcaagaagt      1320
     tgaaaacgag cgactcgcga tccccggttt caacgttatc tgcaacgtgg accacgccag      1380
     gcgcggaacc gcgatcgctc taaaagagca catcgaatac acccacgtcg agaagagttt      1440
     ggacggccgc ctcattgcgc tgcgtgtcca aaacacaacg ctctgcaatg tgtacgctcc      1500
     gtcgggtacc gcactccgtg ccgagcgaga gcgatttttc aatggtacgc tcgcgtacta      1560
     ccttcggcac aacaccgatc acatcgtcct cgccggcgat ttcaactgcg tgctacgacc      1620
     gtgcgattcc acgagctcga acccgagcgc cgcgctacag acggccgtcc agcaaatacg      1680
     actgcacgac gtgtggctga agctgcaccc caatacacac gcacccacgt acgtcgtaca      1740
     caacgccgaa tccagactcg accgcgtgta tgtgagcgcg ggactgtgcg atcagctgag      1800
     aactgccgcg acacatgtgt gttcattcac ggaccacaaa gcgctgaccg tgcgaatctg      1860
     cctcccccac ctcggcggcg aacgcggccg tgggttttgg agtttgcgcc cccacctcct      1920
     gacccaggaa aataaagaag agttcgccgt acggtggcag tactggacgc gccagcgaaa      1980
     ccggtaccga actgcgctgg actggtggat ttcgttcgca aaaccaaaaa taaaatcctt      2040
     tttcaagtgg aagtcgaacg aagtctaccg tgtccaccac gcgcggcacc agcagctgta      2100
     cgcggaatta cgtgaggcgt acgacgccta ctaccagaat cccgccatgc tcaccaccat      2160
     ccaccgcgtg aaggcgcaga tgctgacgtt gcagcgcgag ttctcacaga attttgcgcg      2220
     cgtcaacgaa acccgcgtgg ccggcgagag cctgtccacg ttccagctgg gggaaagacg      2280
     aaggaaaaag acaacgatca cgcgccttaa aaatgcgcgc gacgaagttc tgcaaacaca      2340
     gcccgaaatt gagcagcacg tgctccagta cttcaccgag ctgtacgccg cagaccctgc      2400
     gagagcacca gacatcgacg ccggcctcgg ttgcgagagg attatccccg ttgacgacga      2460
     cgccaacgcg agtctcgtgg aagagatcac gctcgaggag atcaaattag cmataattac      2520
     cagccccaaa cgaaaatcac cagggggcga tggtctaacg gccgagtttt tgaactgggc      2580
     gttcgacgtc atctaccgcg aactgcacgc ggtgatgaat gaactgctgg tggcgcccgt      2640
     accagcagaa ttctccgaag ggaccatcgt gctcgtgaaa aagagcggcc ggagcgcaga      2700
     gaacatctcc tcgtatcgtc ccatcagtct gtgtaataca gacagccgag tcttcagccg      2760
     tatcatgcgg caacgtttga ccagggtgct acaggcgcac aacgttctca ccgactcgca      2820
     gaagtgcgga gagcgccgga gcatcttcca ggccactctc gcgctgaagg accgaatcgc      2880
     cagtctgctg gcccgaaagg taaagggtaa gttgatctct tttgacctcg accacgcttt      2940
     cgatcgagta tcactgccct tcctttaccg cacgatgctc tctctcggga tcaaccccga      3000
     cttcgtgtct ctgctggaga gacatttctc ccgagctgga tcccgcattc ttcttaatgg      3060
     gtttttgtcc ccacggttcg atataaaaaa atctgtgcgc cagggtgatc ccctgtcgat      3120
     ggtgttgttc tccctataca tgcatcccct gctgctggcg ctagagcgta tctgtgttgg      3180
     cgacctcgtc gttgcgtacg cagacgacgt atcggtggta gtcacagcga cagagacgat      3240
     cgaggcaatc aatcaactat ttggtcgatt tgaaattgcc gcgggcgcgc gcctgaaccg      3300
     gcaaaaaacc gttgcgatcg acgtggggca cgtcgaaggg agaccgctgg tcgttccctg      3360
     gctgcgaacg gtcgagaagg tgaaagtgct tggcattttc ttcgccaact cgatccgact      3420
     aatgatcaag ctgaactggg atgcgcaggt gacgaaggtg gcgcaattaa tctggatgca      3480
     ctcgatgcgc agcctgacgc tccagcagaa ggtgattctc ctgaacacct tcatcacgtc      3540
     caaggtgtgg tacttggcgt caactcttcc accgtaccag gtgcacgtgg cgaagctgac      3600
     agcgacgatg gggacgtacc tgtttcgggg cctcccggca cgcataccga tgcagcagct      3660
     ggcgcgacgc cgtgaagacg gcgggctgaa gctgcactta ccggcgataa aatgcaaagc      3720
     actttgcatc aatcgccacc tccaagagat cgactccctt ccctactaca aatccttcct      3780
     cgaccgagct attcctcccc cgacaagcct tccctgcctg aaactccttt gcgagcaaac      3840
     gcctttgctc cccgcccaca tccaaaactt cccctccagc gatcgaatcc accagcactt      3900
     ccttgatgga accgagcggc ccagggtcga aacgaagcag ccgaacctca actggaggcg      3960
     tctgtggaaa aacatctcgt cccggcgact aacttccggc gaacgcagcg cgctgtattt      4020
     gctggtgaac gagaagacgg agcaccgacg gctgatgcac gtgatccagc gtgcggacgg      4080
     gccgaactgc cagcactgcg cggcgaacga ggaaacgctg actcacaagt tcagcgaatg      4140
     cccccgcgtg gcagcggcct gggcgcacac acagcgacgg ctgacggcga tcgacggagg      4200
     aaggcagcag ttttccttcg gcgagctstt caggccagtt ctgaatggaa twgcggatgg      4260
     aagaagagcm agawtgctga aaacattcat cagctacatc gtctttgttg acaawtgtgc      4320
     aacaactgca attgatgtag ctgctctgga tttcgagcta agcctggtcg gttgaaatgg      4380
     tgtaaccact gtcgcgcccg gaggtcccgg ggcccccctg accacaagct acacgaaaag      4440
     tggaacaggg aacaccctcc ggctcctccg gggcgcctgg taccgacacc ccaacgaaga      4500
     atccacggag gcgctcggga gacccggggc ccccctaacc acaagtcttc ggaggagtgg      4560
     aatagggaca accccccggg ctcctgagac ccctggacga ggtcgcacaa ggggtaaacc      4620
     cccatcccct cggatgaacg caaggattas gccgagggac aacgatcgac cggawccacc      4680
     gamgaatgac aacacaacag taagaktgta atctccwagc gtttaggatt atcaaatata      4740
     ggttatcaaa ttcgctgttt aattttaagc aatcacaaat aaactatatt ttattaaaaa      4800
     aaaaaaaaaa aaaaa                                                       4815
//
ID   L1-6_CQ     repbase;    DNA;    INV; 5306 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5306
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 136-136 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2185..2706,2592..5264)
FT                 /product="L1-6_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRAHEIDVFFLQEVENDTINIPGYTMLYNIDNRRRGV
FT                 AIGLKSTVEHVTVEKSLDGRLIVVRLRNGTTLCNIYAPTGSQNRQSRENFF
FT                 NCTCAHYLRNLSGPLILGGDFNSIVNDRDATGATPKSEMTSRLMTSLDLID
FT                 VWREYIGIKQTTLSFEEVLVQDWIVFLCRSQQESIPDRCXEGVHRNQTNYT
FT                 FVRGGSGSRLDRFLVSKSTREHLRTIQHAVTCFSDHKAVIVRMVMPVAGTN
FT                 IGRGVWRLNAATMDDEDTMAELQRKWDYLVRQRRNFTSWLIWWIEFAKPKL
FT                 AAFFRWRSSIQNREYRDSMELLHGELARRYELYIDDASQLTRINHIKSLML
FT                 RMQRERSNKSRLLYDTYLQGEPTSTFHLAEKSQNRKSTYIHQLEIDGRIIQ
FT                 GPEVVQHAVDYFENLFSNNIVDFHSPDFVPTCSIPPNNERNEAIFEPVSEE
FT                 EIIKYIKQSCSRKSPGEDGLPKEFYTKAWDIIKQEFTLIMNEALQAPDTTS
FT                 KFMNGIVVLVKKKGTGKDMKAYRPITLLNFDYKVLTRIIKQRITPLVETVL
FT                 SRHQKCSNGKHNIFEATTKILDKISALKFRGQPSMLVSFDMDHAFDRVNHS
FT                 FLFRVMEQMNFNPRLINFLQKITRNSFSRILVNGNLSRPFQILRSVRQGDP
FT                 LSMLLFVLYMQPLVDKIVSEGLAGDALNVYADDLSIFVPDGRRLTQLVNVI
FT                 KAYEPVSGAVLNLAKTVALKIGNVDTNGIPPWLNFEDSCKILGLIFTDTVK
FT                 KSMELTWQNILKQLKWRLWTCKSRVLNLIQKVIHINTFVSSKLWYAASTLP
FT                 LPKKFETQILKEFRNFLWIGGKQHIRLETLSLPKSRGGLNLHSPGLKSTAL
FT                 ITNRMLKNESELDLFRDMRYNTPFFQIPAAYPQIKTTVLEISTLSPRAIQQ
FT                 PSSFVIFQELMEGECDPAILETQREWRRIFKQLGDQKLDSTLRSNWYCAVH
FT                 GKIQHNELLHRQNRRSSPNCDHCPRTVDTLEHRLFECRIVSPVWSYAKTKL
FT                 NAISPNLRHKRNXYFLYPSFSRLSREHSIQTKLIVAKYLYFVCNNSIDNIS
FT                 VENFKFEL"
FT   CDS           join(122..1132,945..1646,1445..2107)
FT                 /product="L1-6_CQ_1p"
FT                 /translation="MNEMRGYRKNTVVIDFGPVPKKPTITQIRKFAFEQLK
FT                 LDITQIRNLQLSMTKSFVYIEMSPEINAEELVAEFDMKLTMTSEDGVQTPI
FT                 PLHTADGATEVKIHDLPPYMPTQIIAQHLAEFGEILSITDELWKEHFPGVP
FT                 TGTRIVRMRIRKPIPSYVNIGEEVGYVRYRNQRPTCRHCSRYLHVGQKCSD
FT                 VKKAITGSVNSRLTLADIVSGVNPSTEEKQNTETLPAPPPLMPRPSLPIET
FT                 LNEEQLLADEEAPAIPEVVPEQESKEDSTFPELDFAGDENYEISSDEDAKM
FT                 QTEEXESEADSAEDXTAGKKRPARPKPQKKSKRLSGSKSKSGSSKILLEMK
FT                 TTRFQVMRMQKCRRKKXSRKPIQLKIQXQERNAPHXPSRRRSXNGCPDPSP
FT                 NLAPPSNIVFNXIXITTLSTSNXSSSSQXRHSSAXIYSAQHIXPKGKKLRY
FT                 MSCRSVHRYCHPTQXPXTARRSSEHXAPGSGNXRTSSLXVGPPLRXXYHHA
FT                 ASPVXIGKKXRSRYMSCRSTRYCPPFKSPXTAHRLPGRSAPXTRIRGPTPS
FT                 XXTLXXPPAXLXXEPAAXXXXARREAQVQVYVLPKHQILPXVQKPSNCXQI
FT                 ARPLXTRXPHPRPDAEXXNARXSPXRAXXGTRSRXTXXPAMRTTYQQAASP
FT                 XSTGKKHRYMSCRSTSGCCPLCKRISITXRSXXXPXCAXGLXGXXXXGXPP
FT                 XQXXVIXXTRKXKLASXHGPXRXXVRXAXVVRKXXXHDSXARTAVLXNXLX
FT                 EPXTXNGHXNXKGXXRXCDTSDICWAIAALRXHFPKGSKWI"
XX
SQ   Sequence 5306 BP; 1556 A; 1332 C; 1154 G; 1157 T; 107 other;
     agttgacgtc aaaacctcgg ttggggcgca cgtctttaca ctwtcgcgct gcgagttgtt        60
     ttttcgctwa tagttgcaac cactctccgc gctaggcaaa tattgcctac tggcccgcat       120
     catgaacgag atgcgtggct accgtaaaaa cacggtggtg atcgattttg gaccggtccc       180
     aaaaaaacca acaataacac aaatccgcaa gttcgccttc gagcagctca aactagacat       240
     cacacaaatt cgcaacctcc agctcagcat gaccaagtca tttgtttaca tcgagatgag       300
     tccagaaatc aacgcagagg aactggtggc agagttcgac atgaagctca ctatgacgtc       360
     ggaagatgga gtacaaactc cgatcccgct gcacactgca gatggagcta ccgaagttaa       420
     gatccacgat cttccsccct acatgcccac ccagattatc gcgcaacacc tagcagagtt       480
     cggcgagatt ctgtccatca cagacgagct gtggaaggaa cacttcccgg gtgtaccgac       540
     aggtacgcgg attgttcgaa tgaggatccg gaaacctatt ccatcctatg tcaacatcgg       600
     ggaagaagtg gggtacgttc gttaccgtaa tcagcgaccc acctgcagac actgttcccg       660
     ctatctccac gttggacaga agtgttctga cgttaagaag gctattacgg gcagcgttaa       720
     cagccgcttg acactggccg acatcgtgtc gggtgtaaac ccgagcaccg aagaaaaaca       780
     aaacaccgaa accctaccag caccacctcc attgatgcca cgaccctctc tgccgatcga       840
     gacgctgaac gaagaacaac tccttgccga tgaggaggct ccggcgatcc ctgaagtcgt       900
     tccggaacaa gaaagcaaag aagactcgac ttttccagaa ctagattttg ctggagatga       960
     aaactacgag atttcaagtg atgaggatgc aaaaatgcag acggaagaag scgagtcgga      1020
     agccgattca gctgaagatw caackgcagg aaagaaacgc cccgcacgmc ccaagccgca      1080
     gaagaagtcs aaacggctgt ccggatccaa gtccaaatct ggctcctcca agtaacatcg      1140
     ttttcaaccw watttkcatc accackttat ctacatcmaa ctmctcatcg tcatcgcaaw      1200
     ctcgccactc ttcagcaamc atttattcmg cgcaacacat agwtcctaaa ggtaaaaagc      1260
     tccggtatat gtcctgccga agcgtmcaca gatactgcca tcccactcaa asccccmaaa      1320
     ctgcccgcag atcktccgag catwatgcac ctggttccgg caacmgccga acatcgtcgc      1380
     tgcwcgtcgg cccgccgttg aggamagwat accatcacgc cgcttcacct gttckcatag      1440
     gtaagaagcw caggtccagg tatatgtcct gccgaagcac cagatactgc cckccgttca      1500
     aaagccctcm aactgcwcac agattgcccg gccgctcwgc acccgwmacc cgcatccgcg      1560
     gcccgacgcc gagcmcasaa acgctcgmag wtccccckgc cgmgctgmac ktggaacccg      1620
     cagccgmaam acammckgcc cggcgatgag gacaacatat caacaagcag cttcacctak      1680
     ctccacaggt aagaagcaca gatatatgtc ctgccgaagc acctccggat gctgccctct      1740
     ctgcaaaaga atctcaatta ccmacagatc gmagmacmca ccswgstgtg cggamggcct      1800
     gcamggaamt tmcscgsckg gtkcwccgcc tcsccaatss ckggtgatam kcamaacacg      1860
     gaagwccaaa ctcgcatcaw cgcacggccc wagmagaaaw cwggtgagag magcgmcagt      1920
     ggtacgtaaa macaamaasc atgacagcak sgcaagaaca gctgttctgw caaackactt      1980
     gwcagaacca gwgacckgga acgggcacma aaacgwaaag ggtcwsgmaa gamcgtgcga      2040
     caccagcgac atctgttggg caatagcagc actacgcsgg cattttccta aagggtctaa      2100
     gtggatttga aaagttataa tttcgtatct atcaacatma acaacatcac gagccaaact      2160
     aagctggatg cgctggccag tttcatgcgc gctcacgaaa tagacgtttt cttccttcaa      2220
     gaagttgaaa acgatactat aaatatcccc ggctacacca tgctgtacaa tatagacaat      2280
     cgaagaaggg gcgttgcaat tggwttgaaa tctacagttg agcatgtaac ggttgagaaa      2340
     tcactggacg gacgattaat cgtcgtacgc ttgagaaatg ggacaacgct gtgtaacatc      2400
     tacgcgccta ctggttcgca aaaccgccag tcacgtgaaa acttcttcaa ctgcacctgt      2460
     gckcactact tgcgcaatct ttctggtccg ctaattttgg gaggagactt taactcgatc      2520
     gtgaacgacc gtgatgctac aggtgccacc cctaagagtg aaatgacttc acgattgatg      2580
     acttcgcttg acctgatcga tgtktggagg gagtacatcg gaatcaaaca aactacactt      2640
     tcgttcgagg aggttctggt tcaagactgg atcgttttct tgtgtcgaag tcaacaagag      2700
     agcatctaag gacaatccaa catgctgtta cttgctttag tgatcacaaa gctgtgatag      2760
     tgcgcatggt gatgccagtt gcgggtacaa atattggtcg aggagtttgg agattgaacg      2820
     cagcaactat ggacgatgag gacacaatgg ctgagctgca acggaaatgg gactatctag      2880
     taaggcagcg acgaaacttc acatcctggc taatctggtg gatagaattt gctaaaccaa      2940
     agctggctgc cttcttcaga tggcggtcat cgatccaaaa tagggagtat cgagactcaa      3000
     tggagctctt gcatggggaa ttagctcgac gctatgaact gtacatcgac gacgcttcgc      3060
     agcttactcg catcaatcac atcaaaagcc tgatgctgag aatgcagagg gaaagatcca      3120
     acaaatcacg cctgctatat gatacctacc tacaaggaga accgacaagc acgtttcacc      3180
     tggccgaaaa aagccaaaat cgaaagtcaa catacattca ccagctagag attgacggaa      3240
     gaatcatcca aggaccggaa gtcgtacaac atgcagtgga ctactttgaa aacctgttct      3300
     caaacaacat tgtggacttt cattcacctg actttgtgcc aacctgcagc atccctccaa      3360
     acaatgaacg caacgaagca atctttgaac ctgtgagcga agaagaaatt atcaagtaca      3420
     tcaagcaaag ctgttcgagg aagtcacctg gcgaagacgg tctacccaaa gaattttaca      3480
     cgaaagcgtg ggacatcatc aagcaggaat tcacgctgat aatgaatgaa gctcttcaag      3540
     caccagacac tacttccaaa ttcatgaatg gaatagttgt gctggtgaaa aagaagggta      3600
     ccggaaagga catgaaggcg tacaggccga ttacgctgtt aaactttgat tacaaagtct      3660
     taactagaat aatcaaacaa cgaatcacgc ctcttgtcga aacagttctt tcacgtcacc      3720
     agaagtgctc caacgggaag cataacatct tcgaagcaac gacaaagatc ctggacaaaa      3780
     tctctgcact gaaattccgt ggccagcctt ccatgcttgt ctcttttgac atggaccatg      3840
     cgttcgatcg ggtcaaccac agcttcctct tcagggtgat ggagcagatg aactttaatc      3900
     ctcgcttgat caacttctta caaaaaatta ctaggaactc gttctctaga attctggtga      3960
     acggaaatct atcacgtccg tttcaaatac tacggtccgt aaggcaaggc gaccctctca      4020
     gcatgctgct cttcgtccta tacatgcaac cattggtcga caaaattgtt tcagagggac      4080
     tcgctggcga cgcgctgaac gtttacgcag acgatctaag catatttgta ccagacggaa      4140
     gacgactcac gcagttagtc aacgtgatca aagcttatga accagtttct ggtgcagttc      4200
     tcaaccttgc gaagacagtg gcgctgaaaa ttggaaatgt agacacaaat ggtattccgc      4260
     cttggctgaa tttcgaggac tcctgcaaga tcttggggct tatcttcacg gataccgtga      4320
     agaaatccat ggagcttacc tggcaaaaca ttttgaagca gttgaaatgg cgactgtgga      4380
     cgtgcaagtc tcgagttcta aatctgatcc agaaagtcat ccacatcaac acctttgtgt      4440
     cttccaaact gtggtacgca gcttcaacac ttccgcttcc caaaaagttt gagacgcaga      4500
     ttctgaaaga atttcggaat ttcctgtgga ttggtgggaa acaacacatc cggctggaga      4560
     ctttgtctct tcccaaatct cgtggtggtc tgaatcttca ctcacctggc ctcaaatcaa      4620
     ctgcgctgat cacaaacagg atgctgaaaa atgaaagtga actagacctc ttcagggaca      4680
     tgcgatacaa cacacctttc tttcagatac cagccgctta cccacaaatc aaaacaactg      4740
     ttctggaaat atcaacactg tcaccacgtg caattcagca gcccagctcg ttcgtcatct      4800
     tccaagagct catggaaggt gaatgtgatc ctgccatcct agaaacccag cgagaatgga      4860
     gacgtatctt caaacaacta ggagatcaaa aactggactc tacacttcga tctaattggt      4920
     attgcgcagt acatgggaaa atccaacaca acgagctgct gcatcggcaa aacagacgat      4980
     ctagtccgaa ctgtgaccat tgtccgcgga cagtggacac actagagcat aggctattcg      5040
     agtgtcgcat agtttcccca gtatggagtt atgcgaaaac aaaactgaat gctattagtc      5100
     ctaaccttag acataaacgg aatgmgtatt ttctgtatcc atcatttagt mgattgtcac      5160
     gagagcattc aattcaaaca aaactcattg ttgccaaata tttatatttt gtttgtaata      5220
     attctataga taacattagt gtagaaaact tcaaatttga actttgaamt tttaagwgaa      5280
     taaacaagga ctaccawawa aaaaaa                                           5306
//
ID   L1-7_CQ     repbase;    DNA;    INV; 3200 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3200
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 137-137 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           16..3129
FT                 /product="L1-7_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGLDIVFLQEVYDDQLSIPGFNTITNIDHAKRGTAIL
FT                 LKQHIKYTHIERSLDSRILAVRIHESVTLCNVYAPSGTQHRAEREKLFNST
FT                 IAHYLRHNAHYTLLAGDFNAVIRSRDSTGSSNFSRSLANLTQQLRFVDVWA
FT                 TLRRNDDGFTYITHNSAARLDRLYVSVGMKEQLRTAEIHACSFTNHHALTV
FT                 RLCLPSLGNDHGRGYWSLHPRLLDAETLDELRTKWTYWTRQRRHYTSWLNW
FT                 WQGYVKHRLKAFFRWKSTESHLASQQQHQHLYSQLSSAYDEYQCNPAALSK
FT                 INKIKGQMLSLQRKHSEAFFRNNETRVAGESLSTYHLGERTRKRTSIDQLQ
FT                 TDDHRTLENQTDIQNHVVSYFRDLYSAEERLPEQDFVCNRVVPCDSESNNS
FT                 SMNEITTPEIYQAIKSSASRKAAGPDGIPKEFYLYAFDIIHRELNLIMNEA
FT                 LNGDFSADFVAGVVVLVKKKNTPNTVHGFRPISLLNYDYKLLARILKSRID
FT                 RILRSHGVLSSAQKCSNSERTIFQATLAIKDKIAKLNKEKKSAKLISFDLD
FT                 HAFDRVDRSFLYTTMQDLGFKPSLIALLKRIGDLSSSRLLINGHLSESFAI
FT                 ERSVRQGDPLAMHLFVLFLHSLICKLEAVCSGDDDLIAVYADDISVVVSNN
FT                 SKVDELRRLFQSFESCSGAKLNTNKTFAMDIGWCNQRNRWDIPWLQTTDQM
FT                 KILGIIFTNSIRRMITINWDKLVGKFAQLLWLQKLRLLSLHQKIAVLNTFA
FT                 TSKLWYVSSILTINTAHIAKITSLMGSFLWDGAALRVPIHQLALPIETGGL
FT                 KLQLPFFKCKALLVYRHLAERQSSPFYASYLASTLNPPNLSAIPSSLPCLK
FT                 TVCQEFAYLPQRLRDSTQLSSSAVHGHLLCSAEKPKIMQQHPDLLWTRIWK
FT                 NISAKELNTAEKTCLYLTVNQKISHQELLFRTNRAPSPNCEHCGFVGTLQH
FT                 KLADCSRVSGAWALLQGKLQGITTINLPYEALARPELRRIGRRTRAAILKT
FT                 FACYVIFIEKVNGLVDINALDFFLQTEVHLNC"
XX
SQ   Sequence 3200 BP; 952 A; 828 C; 654 G; 766 T; 0 other;
     aattttatac gcacaatggg tctggatatc gtgttcctcc aagaggtgta cgatgatcag        60
     cttagtatac ccggtttcaa caccataaca aacattgacc acgctaagcg aggcacagct       120
     atcttactca aacaacacat caaatacaca cacatcgaga gaagtcttga ttcccggatt       180
     ctagctgtac gtatacatga gtctgtaacc ctatgtaacg tatatgcacc atcgggtaca       240
     caacaccgtg ctgagagaga aaagctcttc aactcaacaa tagcacacta tcttcgacac       300
     aacgctcact acacgctcct tgctggagat tttaacgctg ttatcaggtc gagagactcc       360
     actggtagta gtaactttag cagatctctc gccaacctga cacagcagct gcgctttgtt       420
     gatgtatggg caaccttacg gagaaacgat gacggcttta cctacatcac ccataactct       480
     gcggccaggc tggaccggct gtacgttagt gtgggaatga aagaacaact ccgtactgcc       540
     gaaatacatg cttgttcttt cacaaatcac catgcgctca cagtacgcct ctgtttacca       600
     tctcttggta acgaccatgg ccggggttac tggtctcttc acccacggct gcttgatgcg       660
     gaaaccctgg atgaactgcg cactaaatgg acatactgga ctagacaacg tcgacactac       720
     acttcgtggt tgaactggtg gcaaggctac gtgaaacacc gtttgaaagc cttcttccgc       780
     tggaaatcaa cagagtctca cctggcttct caacaacaac atcagcacct gtacagccag       840
     ctctcctctg cgtacgacga ataccaatgt aatccagcag ctttgtccaa aatcaacaaa       900
     atcaaagggc aaatgttgtc actccaacgc aaacattctg aagcattctt ccgaaacaac       960
     gaaacccgag tcgccggaga gtctctctcc acataccatc tcggagaacg cactagaaag      1020
     agaaccagca tcgatcaact acaaaccgat gaccacagaa ccctggagaa ccagaccgac      1080
     atccaaaacc acgtggtgag ttactttagg gacctttact ctgcagagga gaggctccct      1140
     gaacaagact tcgtttgtaa cagggttgta ccctgtgaca gcgaaagcaa caacagtagc      1200
     atgaacgaaa ttaccacgcc tgagatctat caagcgatca aatcaagtgc ttcgcggaaa      1260
     gcagccgggc cagatgggat tccaaaagaa ttctatttgt acgcctttga catcatacac      1320
     agagaactga acctaatcat gaatgaagct ttgaatggag atttctcagc tgattttgta      1380
     gctggagtgg ttgttcttgt gaagaagaaa aacactccca acactgtcca cggcttccgc      1440
     cccatatctc tactgaacta cgactataag ctactagcac gaattctcaa aagtcggatt      1500
     gatcgaattt tgagatccca cggagttctg agctctgcac aaaaatgctc caactctgaa      1560
     aggacgatat ttcaagccac cctcgccata aaagataaaa tcgccaaact gaacaaagag      1620
     aagaagtcgg cgaagctcat atctttcgat ttggaccacg cgtttgatcg agttgatcga      1680
     tcttttctct acaccaccat gcaagatctc ggtttcaaac cctcactgat cgctctacta      1740
     aaaagaatcg gcgatctctc atcctctcgc ctgctcatta acggtcacct ctctgagtcc      1800
     tttgcgattg agagatctgt ccggcagggt gacccactgg ccatgcatct gttcgtgctt      1860
     ttcctgcatt cccttatctg caagcttgaa gcggtatgta gtggagacga tgaccttatt      1920
     gcagtttacg ctgacgacat ctctgtagtt gtttccaaca attcgaaagt ggacgaactg      1980
     agaaggttgt tccagagttt tgagagctgc tcaggggcca agctgaacac aaacaaaaca      2040
     ttcgcgatgg acatcggatg gtgcaaccag cggaaccgat gggacatccc ttggttgcag      2100
     acaacagacc agatgaaaat tctcggaatc atctttacaa actccattcg acggatgatt      2160
     accatcaact gggataaact cgtgggaaaa ttcgctcaac tgctgtggtt gcagaaactg      2220
     cgacttctca gtctacacca gaagattgca gtactcaaca cattcgcaac ttcgaagctg      2280
     tggtacgtat catctatcct caccatcaac acagcacaca tagcaaagat tacgtcgctc      2340
     atggggtcct tcttgtggga tggagctgcc cttcgagtac cgattcatca attagctctc      2400
     ccgattgaga cgggtgggct gaaacttcag cttccttttt tcaaatgcaa agcacttctg      2460
     gtatacagac acctcgctga aaggcaaagc tcacctttct acgcttcgta cctggcttca      2520
     actttgaacc cacccaacct ctccgcaatc ccgtccagct tgccctgtct aaaaacggtg      2580
     tgtcaggagt tcgcatatct tccacaacga cttcgagact cgacacagtt atccagctca      2640
     gcagttcatg gacaccttct gtgcagtgct gaaaaaccga agatcatgca acaacatccc      2700
     gacctgctgt ggactagaat atggaagaac atatctgcaa aggaattaaa cactgccgag      2760
     aagacctgcc tctacctgac agtcaaccag aaaatatcgc accaagaact actcttccgg      2820
     actaacaggg ctccttcgcc aaactgcgag cactgtggat tcgttggcac cttacaacac      2880
     aagctagcag attgcagccg agttagtgga gcctgggctc tactgcaagg gaaactgcaa      2940
     ggaataacaa caatcaacct tccctacgaa gcgttagcac gaccagaact ccggcgtatc      3000
     gggagacgaa cgagagcagc aatacttaaa acatttgctt gttatgtcat tttcattgaa      3060
     aaagttaatg gattggtaga cattaacgct ctagatttct ttttacaaac tgaagttcac      3120
     ttaaactgtt aaataacact tagatttaat atttgcattg actgaataaa acaactatac      3180
     aaaaaaaaaa aaaaaaaaaa                                                  3200
//
ID   L1-8_CQ     repbase;    DNA;    INV; 4633 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4633
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 138-138 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           146..1294
FT                 /product="L1-8_CQ_1p"
FT                 /translation="MTSVRPRENTFKVDLSVFPKRPSFEEIHSFVHDVMGL
FT                 RIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVEEHDGRHEIELNKVKYKVRL
FT                 QMDDSTVEVKVHDLSENVRDEELIGFLRHYGDVHCIKELVWGENFAYKGIS
FT                 SGIRVVRMTLRKHIQSFVTVQQEKTLVTYRGQPQTCRHCSRLSHPGITCTD
FT                 NKKLVGQKSDLSDRLKAAQSTDSTSYATVVDKGTAIINSLLPNFVATNLNQ
FT                 LNQAASESKQKELDTTAQQPSCSHLSTATDGVEQSSSSTITPAVAEDDSMS
FT                 DETIVPVANETELMDQDLQQRGYDDSAQFDATSPVDVSGSPFKSPPLPLPI
FT                 KQVHSSVSESDESSAEGSEFQKVKPRRGRGRPKKPRTDSV"
FT   CDS           1383..4577
FT                 /product="L1-8_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNHPTMSYNICTINTNAIANNNKIESLRSFIRQTDAD
FT                 VVLLQEVENSNLTIPGFEVLTNVDDSKRGTAIAIKANIPYSNVQRSLDSRI
FT                 ITVKLGTSTTVCNIYAPSGTQNVSSRENLFKNSLPFYLQNSAEHLVLGGDF
FT                 NSVIRNEDSTGTSNFSISFKTLVGNLDLHDTWSSLNRNQSAFSFVRSNAAS
FT                 RLDRIYVSSSLVSHLRVSEYLVTSFSDHKAFKVRCCLPDLRVLQGRGYWSI
FT                 RSHILTNENVEEFGLRWNRWLRERRNYNSWVSWWIKCAKPKIRSFFKWKTN
FT                 EKFRQFNANNEHLYRQLKEAYEGLLGNPSRREDINRIKSQMLQIQRNFSKV
FT                 YERLNDQTIGGERISGFQLGERTRRKKTSFIKSIQHQNRQLTDPALIENHV
FT                 FEYFKSLYSKQPVEPNVNFPSNRSIPAGSDSNDRLMDEITTSEIFFAVKSS
FT                 ASRKSPGCDGIPKEFYLKTFEIIHPQLNLILNEMLQGNISEELVEGVIVLC
FT                 KKKTNESSIKSYRPISLLNFDYKLLSRILKQRLEKVMVENNLVNSEQKCSN
FT                 SERIIFEAVQAIKDRIVEINCTNRAGRLISFDLDHAFDRVDRGFLLGVMRS
FT                 MGFNERFLLLLERIMSASYSRLLVNGKLTQKFPIERSVRQGDPLSMHLFVL
FT                 YLHPLLVKLLSLCNHPSDLVVAYADDISVIVRDDCILDTLKQAFVEFGECS
FT                 GAVLNLHKTLGMNIGRNRSREIPPWPSMAESLKILGVTFFNSLKETTKHNW
FT                 NELVRKTSRLMWLYKPRSLTLVQRVVVVNTFVTSRLWYLASVLSITNVMIA
FT                 RITSQIGYFIWAQYPHRIAMEQLALPVCKGGLNLHLPVHKCKALLVSRYIA
FT                 DREYTPFARNFEQQMSNPPNVMGIPALYPCLKVVAKLLPYIPTNLTANPSA
FT                 STLHEYYRENLRVPKVMEENPNIDWNRVWRNTRSKALNSAERSTYYLLVNG
FT                 KIPHAALMFRQNRAMNPNCEHCPNSIEDLDHKFATCSRVRHLWRHLRLKLG
FT                 TILGRRIQIKNFLLPELKHCEVRSKQKALKTFINYVNFILDPKSSLSITAL
FT                 DFHLDCNV"
XX
SQ   Sequence 4633 BP; 1365 A; 1066 C; 1026 G; 1176 T; 0 other;
     tagttgggtg caagcttttg cccagaccag acgtatttac cgcgcgttct gcaaaagttt        60
     gttttttgcc cgtgtgcagc cacacttcgg tgtgaggaaa atcttctctt tcattctcgc       120
     taccagcaaa caattgccag cgacgatgac ctccgtgcga ccccgggaaa ataccttcaa       180
     ggttgacctc agtgtgttcc ccaagcgccc aagcttcgaa gaaattcact cctttgtgca       240
     cgatgttatg ggactacgca tcgaccaggt gaaacgactg cagatgaacc acgtgcagaa       300
     tgctgctcac gtgaagtgcg ataccctgaa gaccgctcag gacgctgtcg aggagcacga       360
     tggacgccac gagattgagc taaacaaagt gaaatacaag gtgcgattgc agatggacga       420
     ttcgacggtg gaggtcaagg tccacgacct gtcagagaac gtgcgtgacg aggagcttat       480
     cggtttcctg cgacactatg gggacgtgca ctgcatcaaa gagttggtgt ggggggaaaa       540
     ctttgcgtac aagggcatct cttccggcat tcgcgtggtg aggatgacac tgaggaaaca       600
     tatccaatcg ttcgtgacag tccagcagga gaaaaccctg gtcacttaca gaggtcaacc       660
     ccaaacttgc cgccattgtt ctcgtctgtc gcatcccgga atcacatgta cggacaacaa       720
     aaaactcgtg ggacagaaga gtgacctgag tgatcggctc aaggccgcgc agtcaaccga       780
     ctcgaccagt tacgccaccg ttgtggacaa agggaccgct attatcaact cgcttttgcc       840
     gaacttcgtc gccaccaacc tcaaccagct caaccaagcc gcctctgagt cgaaacaaaa       900
     ggaactcgac accacagcgc agcagccgtc ctgctcgcac ctgagtaccg caactgatgg       960
     agtcgagcaa tcctcctcct caacaatcac tccagccgtg gcagaagacg actcgatgtc      1020
     ggacgagacg atcgtaccgg tcgcgaacga gacggagctg atggatcaag atctgcagca      1080
     gcgtgggtat gatgattcag ctcaattcga tgctacctct cctgtcgatg tgtcagggag      1140
     tccgttcaaa tcccctcccc ttcctctccc tatcaaacaa gtgcatagta gtgtttctga      1200
     atccgacgag tcgtccgctg aagggtcaga gtttcagaaa gtgaaaccaa gacgcggtcg      1260
     gggtcgtccg aagaagccga gaactgactc ggtctaataa catcgattaa aacatcccta      1320
     ctaacctatc ccatttacta atctcgagtc ggttgcgagt attcaacccc acaaaactaa      1380
     tcatgaacca tcctacaatg agctataata tctgcacaat caacactaac gcaattgcaa      1440
     ataacaacaa aattgaaagt ttgcgatctt ttatccgcca aacagatgca gatgttgtac      1500
     tgctacaaga agtcgagaac tcaaatttga ctatcccggg gtttgaggtt ctcacgaacg      1560
     ttgacgattc caagagaggt acagctattg caataaaagc aaacattccc tattcaaacg      1620
     tccagcgtag cttggacagc cgcatcatca ctgtaaaact tggaacttcg accactgttt      1680
     gtaatattta cgcaccatct ggaactcaaa atgtgagctc tcgtgagaac cttttcaaaa      1740
     actctctacc attctacctc caaaattctg ctgagcacct tgttttgggt ggggatttca      1800
     atagcgtgat tcgtaatgag gactcaactg gtactagtaa ctttagtata tcattcaaaa      1860
     cattagttgg aaatttggac cttcacgaca cgtggagttc tttaaatagg aaccagtcag      1920
     cattcagctt cgttcgctca aatgctgctt ctcgtcttga tcgaatatat gtgtcctcct      1980
     ctcttgtttc tcaccttcga gtctctgagt acctggtgac gtcattctct gatcacaaag      2040
     cttttaaggt tcgatgttgt ctccccgatt tgagagtgtt gcaaggaaga ggttactggt      2100
     caatccgttc acacatactc acaaacgaaa atgttgagga gtttggtctg agatggaatc      2160
     gatggttgag ggaacgaaga aattacaaca gctgggtcag ctggtggatt aaatgtgcaa      2220
     aacccaaaat acgtagtttc ttcaagtgga aaacgaatga aaaattcagg caatttaatg      2280
     caaataacga acatctctac cggcagctta aggaagctta cgagggactc ttgggtaacc      2340
     caagtagaag ggaagacata aatcgaataa aatctcaaat gctacaaatt caacgaaatt      2400
     tctcaaaagt ttacgagaga ctgaatgatc aaactattgg gggggaaaga atatctggtt      2460
     ttcaacttgg ggaaagaact cggcggaaaa agacaagctt tataaagtcc attcaacatc      2520
     aaaatcgtca gctaactgat cccgctctga ttgagaatca cgtgttcgaa tattttaaat      2580
     ccttgtactc aaaacaacct gtagaaccaa atgttaactt tccgagcaat cggtcgattc      2640
     cagcagggtc agattcaaat gatcgtttga tggatgaaat aacaacatca gaaatctttt      2700
     ttgctgtaaa atctagtgcc tcgagaaagt cgccagggtg tgatgggatt ccaaaggaat      2760
     tttacttgaa aacctttgag atcattcatc cgcaactcaa tctaattttg aatgaaatgc      2820
     tccaaggaaa catttctgag gaacttgttg aaggagtaat tgtactttgt aagaaaaaga      2880
     caaacgaaag ctcgatcaaa tcataccgac caatttcttt attgaatttc gattacaaac      2940
     tgctttctcg catattgaag caaagattag agaaagttat ggtagaaaac aatctcgtga      3000
     attctgaaca aaagtgctcg aactctgaaa gaatcatttt tgaggcagtg caagcaatca      3060
     aagaccgaat tgtcgagatt aattgcacta acagagctgg gagacttatt tcgtttgatc      3120
     ttgatcatgc ttttgatcgc gttgatagag ggtttcttct gggggttatg agaagtatgg      3180
     gttttaacga aagatttctg ctgctcttgg aaagaatcat gtccgcttcg tactctagat      3240
     tgctcgtcaa tgggaaactc actcaaaaat ttcccattga acgctctgtt agacaaggtg      3300
     acccattaag tatgcacttg tttgtcctct accttcatcc tctcctagta aaactcctct      3360
     ccctctgcaa tcacccctct gacttagtag tagcttatgc ggacgacatt tccgtgattg      3420
     ttcgtgatga ttgtatactg gacacactca agcaagcatt tgttgagttc ggagagtgct      3480
     ctggagctgt gttgaacctc cacaaaacat tggggatgaa cataggcagg aaccgctcac      3540
     gtgagatccc accgtggcct tccatggcag agtcgctcaa aatactcgga gtgacttttt      3600
     tcaattcact gaaggagact acaaaacata attggaacga gcttgtccgg aagacgtcga      3660
     ggctgatgtg gttgtacaag ccacggtcac tcactctcgt gcagagggtt gtcgtagtaa      3720
     atactttcgt aacgtcgagg ctatggtacc tggcctccgt tctgagtatt acaaatgtga      3780
     tgatcgctag aataacttcg caaattgggt attttatctg ggcacaatac ccacacagaa      3840
     tagcaatgga gcaattggcg ttacccgtct gtaaaggagg gttaaacctg catctccctg      3900
     tgcacaagtg caaggcgttg ttggtcagcc ggtacatcgc cgatcgagag tacaccccct      3960
     ttgcacggaa ttttgagcag caaatgtcca acccacctaa cgtaatgggt atccctgcac      4020
     tctacccgtg tttgaaggta gtggccaagt tgctcccgta catccccacg aacctgactg      4080
     cgaacccgtc ggcgagtact ctgcatgagt actatcgaga gaacctgcga gtaccgaaag      4140
     ttatggagga gaaccccaac atcgactgga atcgagtatg gagaaacacc cgaagcaaag      4200
     cactcaactc agctgaaaga tcaacctact accttttggt caacggaaag atccctcacg      4260
     ccgcgctaat gttcagacaa aacagagcca tgaatccgaa ctgtgaacac tgtcctaatt      4320
     ccattgaaga tcttgatcat aagttcgcaa cgtgcagtag ggtaagacat ctttggcgtc      4380
     accttcgttt aaagttgggg acaattttag gtagaaggat tcaaattaaa aattttctct      4440
     tgccagagct aaaacactgc gaagttagga gcaaacaaaa ggcgctgaaa acatttataa      4500
     attatgtaaa tttcattcta gaccctaaaa gctcgctatc aattaccgca cttgatttcc      4560
     acttagattg taatgtatga aatgatgctg taactcaaaa gtctgaataa acgtttttac      4620
     aaaaaaaaaa aaa                                                         4633
//
ID   L1-9_CQ     repbase;    DNA;    INV; 3983 BP.
XX
AC   .
XX
DT   26-DEC-2010 (Rel. 16.01, Created)
DT   26-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   An L1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3983
RA   Kojima K.K. and Jurka J.;
RT   "L1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 139-139 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..745
FT                 /product="L1-9_CQ_1p"
FT                 /translation="MEDGAVDVKLFDLSDEVSDDEIIEFLSDYGEVLSVRD
FT                 LYWEDKYFFRAIPTGVRVVKMFVERNIDSYVSIGGLVTQVQYHGQQHTCRH
FT                 CNEFXHNGISCVNNKKLMVQKTYADAAKQPKQVTKPTPKSTPRLPTGSQLN
FT                 QVAGPSQPRLNDNIMLPPKDRLVFTKLTPQPQKSKGKGSKTDGNDTDTSST
FT                 STRSLRSKSKKHKRDGAVSVDEGMVL"
FT   CDS           join(1451..3115,3119..4621)
FT                 /product="L1-9_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MANYNSYNIATININTITNTTKIDALRTFTRTMNLDI
FT                 IXLQEVENEQLTLPGYNVICNVDHARRGTAIALKEHIRYSHVEKSLDGRLI
FT                 ALQINDTTLCNIYAPSGTAQRADRERFFNNTLAYYLRRRTSHTVLMGDFNC
FT                 VLRQCDATGYNLSPALQTAVRQLQLFDVWEQLQPQAQGYTYISHNSASRLD
FT                 RIYVTQGLRNQLRNSDTHVCSFTNHKAVTARICLPHLGHETGRGYWSLRPH
FT                 LLTPENIAEFRNRWQYWTRQRRNFPSWMRWWLEFAKPQIKKFFRWKAKEAY
FT                 DEFNGKHQRLYAQLRAAYDQYYQNPVALVAINRIKGEMLTLQRQFSQMCVR
FT                 VNETYVAGEPLSMFQLGERRKKTTTITQLHAEQGELIDGSPAVEEHLHRYF
FT                 SELYAEVHEEREAVDEFQCCQIIPNADPTNEACTREITTADILAAIKSSAP
FT                 RKSPGPDGIPKEFYQWLFDVIHREINLVLNEALRGDFPPEFVEGVVVLVKK
FT                 KGNSNTARSYRPISLLNVDYKIFSRMLKARLDDVMKLHGILSDGQKCSNAE
FT                 RNIFQATLIKDRLAQLISRREKAKIISYDLDHAFDRVRTAFLHQTMRSLGF
FT                 DRRFVDLLACIADRSTSRLLVNGHLSPAFPIQRSVRQGDPISMHLFVLYLH
FT                 PLVSRLERVCGDDLLVAYADDISVISSSVEKIQRMGELFSNFEIVSGARLN
FT                 MEKTVSIDVGLSDGAPLLVPGLRTEIKIKILGVIYTNSIRAMVKLNWDAAV
FT                 SRFAQQVYLHSMRTLTLLQKVALLNTFITSRIWYLSSTLSPCAYHVAKITA
FT                 TMGTYLWKGLPARVAIQQLARSRDQGGLQLPALKSRALLVGRHLQETGSIP
FT                 FYSSFIAQVNPNPPADCPCLKVILQNISLLPXQVQQNPSSSLIHSFFINQT
FT                 ETPRIVRLNPTADWSRIWTNISTRXISSAVRSDLYLLVNGKTEHRQLMHTI
FT                 GRADGASCLHCGALAETLEHKFSTCPRVAAAWVHLKRVAAPILQRMRALTI
FT                 NDVLKPELHNIGPSRRRKFLQLINXYIHFIDTVNGRIDVNALDFHLNCEV"
XX
SQ   Sequence 3983 BP; 1132 A; 1079 C; 901 G; 863 T; 8 other;
     ggtsatcgac aacgacttgg cgcagcagat tgtggaccaa cacgacggca aacacgcgat        60
     cgagcacgag ggcaagtcgt acccaatccg tattgttatg gaagatggag ctgtagatgt       120
     gaagctgttt gacctgtccg acgaagtgtc cgatgacgag atcatcgagt tcttgagcga       180
     ctacggggaa gtgctttctg tccgtgacct ctactgggaa gacaaatact ttttcagggc       240
     catccccact ggtgtgcgtg tggtcaagat gtttgtggag cgaaacatcg actcgtacgt       300
     gagtattggt ggacttgtga cacaggtcca ataccacggt caacaacaca catgtcgcca       360
     ctgcaacgaa ttckcacaca acggaatctc gtgtgtgaac aacaaaaagc tgatggtgca       420
     aaaaacgtac gctgatgcag caaaacaacc aaaacaggtg accaagccaa cccccaagtc       480
     aacaccacgc ctgccaacgg gctcccaact caaccaagtg gctggtccca gccaacccag       540
     actgaatgac aacattatgc tgcctccaaa agatcgcctt gtcttcacca aactaactcc       600
     tcaaccccaa aaatccaaag gcaagggaag caagactgac ggcaacgaca ctgacacctc       660
     ttcaacgtcc accagaagct tgagatccaa atccaagaag cacaaacgtg acggtgctgt       720
     gagtgttgat gagggaatgg tgttgtaaat atggccaact acaacagcta taatattgca       780
     accatcaaca tcaacacaat aaccaacacc accaaaatcg acgcccttcg tacattcaca       840
     cggactatga acttggacat catctktttg caggaagttg agaacgagca gcttaccttg       900
     cctggataca acgtgatctg caacgtcgat catgctagac gcggcactgc aattgcactc       960
     aaagagcata tccgttactc tcacgttgaa aaaagcctgg acggcaggtt gatcgctctc      1020
     caaatcaacg acaccacact ctgtaacatc tatgctccat cgggaacagc acagcgagcg      1080
     gacagagaac ggttctttaa caacacgctc gcatactacc tccgccgtcg cacttcgcac      1140
     acagtgctaa tgggtgactt caactgtgtt ctgcggcagt gtgatgcaac ggggtacaat      1200
     ttgagtccag cactacaaac agctgtacgc caactacaac tgttcgatgt atgggagcag      1260
     ctacaaccac aagcacaagg atacacgtac atctcacaca actcagcgtc ccggctggat      1320
     cgaatctacg tcacacaggg gcttagaaat cagctgagaa actcggacac ccacgtatgc      1380
     tcattcacaa atcacaaagc tgtcactgcg agaatttgtc ttcctcacct cggccacgaa      1440
     actggtcgcg gctactggtc cctacgcccc catcttctta caccagaaaa catcgcagag      1500
     ttccggaaca ggtggcaata ctggacccgc cagcgccgaa acttcccgtc gtggatgaga      1560
     tggtggttgg agttcgcgaa gccacagatc aaaaagtttt tccgctggaa agccaaggaa      1620
     gcatacgacg agttcaacgg taagcatcag agactgtacg cgcagctgcg agcagcatat      1680
     gaccagtact atcagaaccc ggtggcactg gttgctatca atcgtatcaa gggagagatg      1740
     ctcacgctac aacgacaatt ctcgcaaatg tgtgtgaggg taaacgagac ctacgtcgca      1800
     ggcgagccgc tgtccatgtt ccagctgggc gagagacgga aaaaaactac cacaatcaca      1860
     caactacacg ctgaacaagg agagctgatc gacggctcac cagctgttga agaacacttg      1920
     caccgatatt tctccgagct ctacgccgaa gtccacgaag agagagaagc agtcgacgag      1980
     ttccagtgct gccagatcat cccgaatgcc gatccaacga acgaagcttg tacgagagaa      2040
     atcaccacag cagacatcct cgcagccatc aagtcgagtg caccaagaaa atcacctgga      2100
     ccagatggaa ttcctaagga gttctaccaa tggctgtttg acgtcatcca tcgggaaatc      2160
     aatctcgtcc tgaacgaagc tctacgtggt gattttccgc cagagtttgt cgaaggtgtg      2220
     gttgttcttg ttaaaaagaa agggaacagc aacactgctc gctcttacag accgatctct      2280
     ctactgaacg tagactacaa gatcttctct cggatgctga aagcccgcct agacgatgtg      2340
     atgaaactac acggaattct cagcgatggg caaaagtgtt ctaacgctga gcgcaacatt      2400
     ttccaggcca cactatagat caaggatcgg ctcgcacagc tgattagccg aagagagaaa      2460
     gccaaaatca tctcgtacga tctcgatcat gcattcgaca gggtacgtac agccttcctt      2520
     caccaaacca tgcgctcgct cggtttcgat cgtcgcttcg tagaccttct tgcatgtatt      2580
     gcggaccgct ccacatctcg tctcctcgta aacggccatc tctctcccgc attcccgatc      2640
     cagcgctccg tgcgccaggg tgatcccatt tcgatgcact tgttcgttct gtatctacat      2700
     ccactagtaa gcagactcga gcgtgtgtgt ggggatgatc tacttgtggc ctacgcggac      2760
     gacatcagcg tgatctctag cagtgtggag aaaatacaac gaatgggaga attgttctcc      2820
     aacttcgaga tcgtttctgg agcgagactt aacatggaga aaactgtctc catcgacgtt      2880
     ggtctcagcg acggtgcccc gctgctagta cccggccttc ggacggagat caagatcaaa      2940
     attctcggtg ttatttacac caactcgatt cgagcgatgg tgaagctgaa ctgggatgct      3000
     gcagtgtcca gatttgccca acaggtctac ctacactcga tgcgaaccct gacgctgctc      3060
     cagaaggtgg cattgctaaa cacgttcatc acttcgagaa tttggtacct ctcgtcaact      3120
     ctctccccct gcgcgtacca tgtagcaaaa ataacagcta caatgggtac gtacctgtgg      3180
     aaagggttgc cagctcgagt tgcgatccaa cagctagcac gaagtcgaga tcaaggtggt      3240
     ctacaactcc ctgcacttaa gagcagagcc ttgttggtcg gcagacatct acaagagact      3300
     ggctccatcc ccttttactc atccttcatt gcccaagtaa atcccaaccc accagcagac      3360
     tgtccttgcc tcaaagttat cctccaaaat atttcccttt tgcccawcca agtccaacaa      3420
     aatccctcct ccagtctcat tcacagtttc tttataaacc aaactgaaac tcccagaatc      3480
     gtgcggctaa accctacggc tgactggagc aggatatgga ctaatatctc aacaaggmac      3540
     attagttcgg cagttcggag tgacctgtac ctgttggtca atggaaaaac agaacatcga      3600
     cagcttatgc ataccattgg amgagcggat ggagcatctt gtctccactg cggggcacta      3660
     gctgaaacac ttgaacacaa attcagcaca tgtccacgcg ttgcagccgc gtgggttcat      3720
     ctgaagcggg tggcagcgcc aatcctccag cgaatgcgwg cactaaccat caatgacgtc      3780
     ctgaagccag agctccacaa catcggacca tcaaggagga gaaaattcct tcagttgatc      3840
     aatsgctaca tccatttcat tgatacagtc aatggaagaa tcgatgtgaa cgctcttgat      3900
     tttcacctaa actgcgaagt ttgaacaatt atgtaggtaa ttcttttaag ctgcaaaata      3960
     aaccaaattt tacaaaaaaa aaa                                              3983
//
ID   L1-N1_CQ    repbase;    DNA;    INV; 1147 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1147
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 100-100 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >91%
CC   identity.
CC   ~16 bp TSDs. This family encodes a protein similar to ORF1ps of
CC   L1 in Aedes aegypti. Thus it is likely a HAL1-type element.
CC   However, its 3' terminus is 92% identical to that of I-1_CQ and
CC   it is also possible that it is a composite non-LTR
CC   retrotransposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           110..1012
FT                 /product="L1-N1_CQ_1p"
FT                 /translation="MSAVRKNTLVVDFSVLPERPKLDMVQRFVEKSLGLNP
FT                 TDLRSIQLHNIRHCVLIQMADPAAAVEVAVQHHLKHAFRISPTKKIAIPVY
FT                 VDDDIVDVRIHDLPPDMSNMQIAEAMLQYGEVLTIRDEVWRDIFAGVPNGV
FT                 RVLKMKISKPVPSYVTICGLSSLATHTGQISTCRRCGFQRHVSKSCSEAAK
FT                 KQQPKPKPQKNPSPSGPVLPIADLAAVQSQVVVPHTHEDNGNDGFITVVKK
FT                 GKTKRQLEEKQAPEEKRSCLDDDDDDKSPTLDNDQRNDNGHLIGLPTTTTP
FT                 KRRVWKQTV"
XX
SQ   Sequence 1147 BP; 357 A; 290 C; 263 G; 237 T; 0 other;
     cagtcggctc tgtactcgcg tgtgcaccag acgtagcttt gtgctccgcg ttcaaaaatt        60
     cgctattgtt gctcgaacaa acaaacaacg cgttgtggaa gactctgaaa tgagtgctgt       120
     ccgcaaaaat acgctcgtcg tggacttcag cgtcctccca gagcgtccca agctggacat       180
     ggtgcagcgg tttgtggaaa aaagtctggg actaaatccc actgacttga gaagcatcca       240
     gctgcacaac attcgccatt gcgtgctcat ccagatggcg gatccagcag ccgccgtcga       300
     agtagcagtg cagcatcacc tcaagcacgc cttccggatc agcccgacga agaagatcgc       360
     gattccggtc tacgtcgacg atgacatcgt cgacgttcgg atccacgatc tcccgccgga       420
     catgtccaac atgcagatcg ccgaagcaat gctccagtac ggcgaagttt tgacgatcag       480
     ggacgaggtt tggagagaca ttttcgccgg cgtacccaat ggtgtgcggg tgctaaaaat       540
     gaagatctcc aagcccgttc cctcgtacgt cacgatttgc ggccttagca gtttggccac       600
     acacacgggt cagatttcca cgtgccgacg atgtggattc cagcgacacg tgtcgaaaag       660
     ctgctccgag gcggctaaaa aacagcaacc gaagccgaaa ccacaaaaaa atccatctcc       720
     atctggccct gttttgccta tcgccgatct agcagcagta caatcccaag tcgttgttcc       780
     tcacactcac gaggacaatg gtaatgacgg atttattact gttgtaaaga aaggcaaaac       840
     aaagaggcag ttggaagaga agcaagcacc cgaagaaaaa agatcgtgct tggacgacga       900
     cgacgacgac aaatcaccaa ctctcgacaa cgaccaacgc aatgataatg gacatctgat       960
     tggactacca acaacaacca cgccaaaaag aagagtttgg aagcaaactg tttgacgtag      1020
     aactacgtcg ataaaatgta ttattattat tattattgta ttatttttca aaacttggcc      1080
     aaattatggc aacaaaaggc cagtacctct aataaaaaaa aaaaaaaaaa aaaaaaaaaa      1140
     aaaaaaa                                                                1147
//
ID   L1-N2_CQ    repbase;    DNA;    INV; 1389 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1389
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 101-101 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >98%
CC   identity.
CC   This family encodes a protein similar to ORF1ps of L1 in
CC   mosquitoes. Thus it is likely a HAL1-type element.
XX
FH   Key           Location/Qualifiers
FT   CDS           146..1204
FT                 /product="L1-N2_CQ_1p"
FT                 /translation="MTTLRPRENTFKVDLSVFPKRPSFEEIHSFVHDTLGL
FT                 RIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVDQHNERHEIEVNKVKYKVRL
FT                 QMDDSSVEVKIHDLSENVRNEDIVAFLRQYGDVHCIKDLVWGDSFAFKGVS
FT                 SGIRVAKMTLKKDIKSFVTIQLEQTLITYRGQPRTCRHCGRTSHPGMTCTD
FT                 NKKLEGQKNALDERLKSAQSTSSSYAIVVDKGTDKPNDVPTPSAPQTPLCP
FT                 ISSRVTDEVEQFFTLAQTESSSPTLVEDVQMEAEDDPIVKDQCTQQTPEDG
FT                 QPEDNVTDSVSMFKVPALPLSTTTVQSGISETDESSSDGSGFQGVKPKKPR
FT                 GRPKKLKSKT"
XX
SQ   Sequence 1389 BP; 415 A; 336 C; 309 G; 329 T; 0 other;
     tagttgggcc gaagcttttg cccagaccag acgtagtcaa ctcgagctct gtgacaagtg        60
     tttttcccca gctttgtgcc tttgtgcaca ttgaagaatc gttccctatt tcattctcgc       120
     agccagcaaa gtatttgttg cgacaatgac caccttgcga ccacgtgaaa acaccttcaa       180
     ggtggatctt agtgtgttcc ccaagcgtcc aagttttgag gaaatccatt cttttgtcca       240
     cgacacattg ggactacgaa ttgatcaagt gaaacgcctg cagatgaacc acgtgcaaaa       300
     cgcggcacac gtgaaatgtg acacgctcaa gactgcccag gacgctgttg accagcataa       360
     cgaacgccac gaaattgagg tgaacaaggt gaagtacaag gtacggctcc agatggatga       420
     ttcatctgtt gaggttaaga ttcatgacct atcggagaat gtgcgcaacg aggacatcgt       480
     tgcattcctg aggcaatacg gagatgtgca ttgtatcaag gatttagtgt ggggggacag       540
     ctttgccttc aaaggtgtct cctctggcat acgtgttgca aagatgacgc tcaagaaaga       600
     catcaaatcg tttgtgacta tccagctaga gcaaactctc atcacatacc gaggtcaacc       660
     ccggacttgc cgccattgcg gccgtacttc gcaccctgga atgacgtgca cagacaataa       720
     gaagctcgag ggacaaaaga acgctctgga tgagcgtctt aagtctgcgc agtctacttc       780
     gtccagctac gcgattgtgg tagacaaagg aaccgacaaa ccaaacgatg tacctacacc       840
     aagtgcgcca cagacgccgc tctgtccaat ttcgagcaga gtaactgatg aagtcgagca       900
     gttctttaca ctcgcacaaa ccgaatcctc ctcaccaaca ctggtagaag acgttcaaat       960
     ggaagccgaa gatgatccga tcgtgaaaga ccagtgtacc cagcagaccc cggaagatgg      1020
     acagcccgaa gacaacgtta ctgattcggt gtcgatgttt aaagtaccag cccttcccct      1080
     ctccaccacc accgtgcaaa gtggtatctc cgagaccgac gaatcgtcct ctgacggctc      1140
     ggggtttcag ggagtaaaac cgaagaagcc acgtggtcga ccgaagaaac taaagtcaaa      1200
     gacataaact tctcttctaa aaacaactca gttcaaaatt ttaaccaatt ttgagaacga      1260
     tgattcaaaa tcttgtaaat tgttttctag aataaattgt gcttcaacat tagatacttt      1320
     cctatcatgt taaataatct atatgaaact gtataattat gtgctaaata aacgatttta      1380
     caaaaaaaa                                                              1389
//
ID   L1-N3_CQ    repbase;    DNA;    INV; 1402 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1402
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 102-102 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
CC   This family encodes a protein similar to ORF1ps of L1 in
CC   mosquitoes. Thus it is likely a HAL1-type element.
XX
FH   Key           Location/Qualifiers
FT   CDS           157..1224
FT                 /product="L1-N3_CQ_1p"
FT                 /translation="MSQVQTRENTFKVLLSNFPKRPTFEELHKFVHVNLAL
FT                 RPEQVKRLQINHAQNCAHVKCSELKIAQDIVAMHNEKHELVINKTKVKVRL
FT                 MMEDGGVEVKIHDLSENVTDDEIVAFLRHYGDVLSIQETVWGEKFAFRGVS
FT                 SGIRIAKMVLRRHIKSFVTIRNELTLVTYTGQPATCRHCTLTQHIGMSCVE
FT                 NKKLLGQKAXLSERLKSAQTTAPQSYAGVVNEGTSTTVLQTQTAPPQTNPI
FT                 DCISISGTDTATILPNHSTXVTNELSGIGTGDDNEHQIENSRNEESNDEEM
FT                 PVSLTPANMILENNFKVPFPIRDPKTSPSLDTISESESDISPGGSAPNSGR
FT                 RGPGRPKKKKTRH"
XX
SQ   Sequence 1402 BP; 435 A; 342 C; 301 G; 317 T; 7 other;
     tcagttcgca tcgcactctt gatgcgacca gtcgcataaa ccagagttcc tttgttcaag        60
     tgttttttgc tttcttttcc acaccatcgg gtgtggaatc gagttttcgc gtcaaatcat       120
     ctaattgtga ttaatttgtg cttcgccatc acaactatgt ctcaagtgca aactcgtgag       180
     aacaccttca aggtgcttct atcgaacttc ccaaaacgcc caacatttga agagctgcac       240
     aagtttgtgc acgttaatct ggccttgagg ccagagcaag tgaagaggct ccagatcaac       300
     catgcgcaaa actgcgcaca tgttaagtgc agtgagttga aaatcgctca agacattgtt       360
     gctatgcaca acgaaaagca cgagctcgtg attaacaaaa ccaaggtcaa agttcggttg       420
     atgatggagg acgggggagt ggaggtcaaa atccacgatc tctccgaaaa cgtcaccgat       480
     gacgaaattg tggcctttct tcggcactac ggtgatgtct tgagcatcca agaaacagtc       540
     tggggagaaa aattcgcatt ccgcggcgta tcgtcaggaa tccggattgc aaagatggtg       600
     cttcgccgcc atattaagtc gttcgttaca atcagaaacg aactaacgct ggtcacctac       660
     acaggtcaac cagcgacgtg cagacactgc acactaactc aacacatagg gatgtcatgt       720
     gttgagaaca aaaaacttct cggccagaag gcckacctca gcgagagact gaaaagcgca       780
     cagacaactg caccacaaag ctacgctggt gtggtgaacg aaggtacctc caccacggtt       840
     ttgcaaaccc aaactgcacc accacaaaca aatccaatcg actgcatcag tatctcgggg       900
     accgacaccg cgacgatctt gccgaatcac tcaactgakg tcacgaacga gctcagcggw       960
     atcggcactg gagacgacaa cgaacatcaa atcgagaact cacgaaacga agagagcaat      1020
     gatgaagaga tgccagtctc tttgacgcct gctaacatga tcttggaaaa caatttcaag      1080
     gtcccttttc ccatccggga cccgaagaca tcgccatcwt tggacaccat ctcagagagc      1140
     gaaagtgata tctctcctgg aggctctgcg cccaattcgg gccgacgagg acccggccgc      1200
     ccgaaaaaga agaagacgcg ccattgaagc tcaaagatag aagaagaaca aactctaata      1260
     atatttattg taaacgataa acaatttttg gtatagctgt tcaaataatc tgtatttmtc      1320
     gacaaaactt atgcttttct atgtaaacca tgtacaaawt atwatgctct aaataaactt      1380
     tttttttaca aaaaaaaaaa aa                                               1402
//
ID   L1-N4_CQ    repbase;    DNA;    INV; 1430 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1430
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 103-103 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >99%
CC   identity.
CC   This family encodes a protein similar to ORF1ps of L1 in
CC   mosquitoes. Thus it is likely a HAL1-type element.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1279
FT                 /product="L1-N4_CQ_1p"
FT                 /translation="MSHVRTRENTFKVILSNFPKRPKFEEIHKFIHVNLAL
FT                 TPDQVKRLQFSHAENCAYVKCSELKIAQETVAKHNGQHVIESNNAKVKVRL
FT                 VMVDGGVEVKLHDLSENVTNEEIVAFLQHYGDVLSIKETSWGSNYTFHGVS
FT                 SGIRVAKMILRRHIKSFVTIQNESTLISYKNQPETCRHCTLIQHIGMSCVD
FT                 NKKLVGQKTALNQRMSNTQPTPSTSYASVVNSGSSTNTLQIKVVPDNPKIE
FT                 SLSNSESVAKAIVIGNSAQTTVVPSELGTSSSILNISPPAGTEGATVQALR
FT                 KDADAAGSSALIGRTDDDEMPIAVFTATSSVDGTFKVPHPFLEPKPHQPMD
FT                 ASSGSDSDHSGSSESKKRKPGRSKKPKLDK"
XX
SQ   Sequence 1430 BP; 419 A; 338 C; 321 G; 352 T; 0 other;
     aatcagttcg ctttgtgctc gtgaagcgac cggtcgtata tcttgagctc ctcggtacgc        60
     gtgttttgtt tcgtctttgt tccacaccac cgggtgtagg agctgagatt tctcgtcagc       120
     tcgattgacg actcggtgtt ttcttggtgg aaacgcaaca atgtctcacg tgagaacaag       180
     ggagaacacc ttcaaggtga ttctatcaaa ttttccaaaa cgtcctaagt ttgaggaaat       240
     acataaattc atccacgtta accttgctct gactccagac caagtgaagc gtctgcaatt       300
     cagccatgct gaaaattgcg cgtacgtgaa gtgcagtgag ctgaaaatag cgcaagaaac       360
     tgttgctaag cacaatgggc aacatgtcat cgagtcgaac aacgccaagg ttaaagttcg       420
     tttggtaatg gtggacgggg gagtggaggt gaagctccac gatctctcgg agaacgtcac       480
     caacgaagag atcgtggcct ttcttcagca ttacggagac gtcctcagca tcaaagagac       540
     aagctgggga agcaattaca ctttccatgg tgtttcgtct ggaattcggg tggcgaaaat       600
     gatacttcgt cgccacatca aatcgttcgt gactattcaa aacgaatcta ctctcatctc       660
     ctacaaaaac caacctgaaa cgtgtaggca ttgcacactg atccagcaca tcgggatgtc       720
     gtgtgtggac aataaaaaac tcgtcggcca aaagaccgct ctcaaccaaa ggatgagtaa       780
     tactcaacca acaccatcta ctagctatgc tagtgtggtc aacagtggat catctaccaa       840
     cacattgcaa atcaaggttg ttccagacaa tcccaagatc gagagcttga gtaactcgga       900
     gagcgtcgcg aaggcgatcg tgatcggtaa ctcagcccag acaacggtcg tgcccagtga       960
     actcggcact tcatccagta ttttaaacat atcgcctcct gctggaacag agggcgccac      1020
     agtccaagct ctacgtaagg acgcggacgc tgcaggttca tcggcgctga tcggtagaac      1080
     tgacgacgac gagatgccca tcgctgtgtt cactgctact tcatccgtgg acggcacatt      1140
     caaggttcca caccccttcc ttgaaccgaa gcctcatcaa ccaatggacg ctagctctgg      1200
     tagtgatagt gatcactctg gaagctccga atctaaaaag cgcaaacctg gtagatccaa      1260
     aaagcccaag ctggacaagt gaaaacgaac aggattataa tgatgtttat tcaaatgata      1320
     aatgtgtttt tgaaattgct gttcaataac tttattatat ttttaattta cttaaaacct      1380
     atgtaacctt ctcgaagttc caaataaacg tttttacaaa aaaaaaaaaa                 1430
//
ID   L1-N5_CQ    repbase;    DNA;    INV; 1064 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1064
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 104-104 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >88%
CC   identity.
CC   This family encodes a protein similar to ORF1ps of L1 in
CC   mosquitoes. Thus it is likely a HAL1-type element.
XX
FH   Key           Location/Qualifiers
FT   CDS           81..977
FT                 /product="L1-N5_CQ_1p"
FT                 /translation="MSSTRKNTIFVDFGVLPARPPLDSIKTFVEKSMGLNP
FT                 AGFKCLQLHNTRNGILIEMADLATATKVAADNHMKHALRSGEKNFLIPVYV
FT                 DDNAVDVRVHDLPPGMPNDDIADGMAQYGEVLTITDDVWKNFFPGIPNGVR
FT                 VLRMKLXKXVPSYVSIKGQLSLATHAGQIPTCRRCGQKSHPEKTCSSAKAK
FT                 KKTVNANQKNDKPTTTNTIVPAATTTTVSDPISKVTDDDGFRTVEKKRKSV
FT                 KRQLSIESKTTPQEKRTQINFDSETEMDEQTLKQISKEDSAKLRTDNFMKW
FT                 CELMYMQ"
XX
SQ   Sequence 1064 BP; 342 A; 264 C; 245 G; 208 T; 5 other;
     cagtcggcta caatacacgg tgcctatcag acgtgctacc tmctcgcagc aaattctttt        60
     gttttcgtgc aggctcagaa atgagctcaa ctcgaaaaaa cacgatcttc gtggactttg       120
     gagtcctccc agctcgccca ccgctggatt ccataaaaac ctttgtggaa aaaagcatgg       180
     gccttaatcc tgccgggttt aagtgccttc aactgcacaa cacccggaac ggcatcctca       240
     tcgagatggc tgatctagca acagccacca aagtagcagc agacaaccac atgaagcacg       300
     cgctccgttc gggtgagaag aatttcctga ttccggtgta cgttgacgac aacgccgtcg       360
     acgtccgggt ccacgatctt ccgccgggaa tgcccaacga cgacatcgct gacggaatgg       420
     cgcagtatgg agaggtgctg acgattacgg acgacgtttg gaagaacttt ttccccggga       480
     ttccaaacgg tgtgcgggtc ctgaggatga aactckccaa gcmggtgccg tcgtacgtca       540
     gcatcaaggg ccaattaagc ttggccactc atgctggcca gatcccgact tgccgacgat       600
     gtggacagaa aagtcacccc gaaaaaacct gctcatccgc gaaagcaaaa aagaagaccg       660
     tgaacgcgaa ccagaagaac gacaaaccaa caacgacgaa tacwattgtg ccagctgcaa       720
     caacaacaac agtgtctgat cccatctcga aggtcaccga cgacgatggg tttagaactg       780
     ttgagaagaa aagaaagagt gtaaaacgac aactttctat cgagtccaaa acaacgcccc       840
     aagagaagcg cactcaaata aatttcgaca gtgaaaccga gatggacgag caaacgttga       900
     aacaaatcag caaagaagac agcgcaaaat taagaacgga caatttcatg aagtggtgtg       960
     agttgatgta catgcaataa aaatgtattt atctttattt ttmttaagag gcgaatgcac      1020
     aaactgtgta aaacctctat aataaaaaca aacaaaacaa gaaa                       1064
//
ID   L1-N6_CQ    repbase;    DNA;    INV; 1083 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A HAL1-like non-LTR retrotransposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   L1-N6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1083
RA   Kojima K.K. and Jurka J.;
RT   "HAL1-like non-autonomous non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 105-105 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >96%
CC   identity.
CC   This family encodes a protein similar to ORF1ps of L1 in
CC   mosquitoes. Thus it is likely a HAL1-type element.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..1006
FT                 /product="L1-N6_CQ_1p"
FT                 /translation="MSKYRRNAVVIDYNVLPVRPDIESVSKFISNDLQLDL
FT                 KRVKNLQLNNSRNHVIIELGSPEEASDLAERHNLKHKVGCRGKLFRIPIFL
FT                 EDNSIQVRVHDLPPHMPNEIIATHLEAYGEVNSIRREVWREYFPGIPNGVR
FT                 VVRMVLEKPIPSFIKVEEEVGYILYNQQVKTCRHCAKPLHHGKKCDENLAL
FT                 TPTTTTTTTTPAAQLLAPTLPALSPPVSTPSATAIEKEIAPEKTLPEIAPP
FT                 TTTTFLPSTSVKNHQTTPSDQTMDISPEDDDDNETAKTVKPKRRSRRKKPW
FT                 DPHWNHLYDDW"
XX
SQ   Sequence 1083 BP; 361 A; 287 C; 215 G; 220 T; 0 other;
     agacgacagc ttgctcttgc agcggtcgga cgtaaacact agcctgtgct gatctccttt        60
     gttctctttc tcccctgccg gggccgtgcc gatcgaaatg tcgaaatatc gccggaacgc       120
     ggtcgtaatc gactataacg tcttgccggt aagaccggac atcgaatccg tttcgaagtt       180
     catctccaac gaccttcaac tggatttgaa acgagttaaa aacctacaac tcaacaattc       240
     ccgaaaccac gtcatcatcg agctgggatc gccggaggaa gcttcggacc tagccgaacg       300
     ccataacctc aaacacaagg taggatgcag aggcaaattg ttccggatac ctattttcct       360
     ggaggacaat tccatccaag tccgcgtcca cgatttgccg ccgcacatgc cgaacgaaat       420
     aatcgccacc catctcgagg cctacgggga agtcaactcc attcggagag aagtctggcg       480
     agaatatttt ccaggcattc cgaacggagt tcgagttgtc cggatggttc tggagaagcc       540
     aattccttcc tttataaagg tagaggaaga agttggctac attttgtaca accagcaagt       600
     taaaacttgc cgccattgtg cgaaaccact tcaccacggg aagaagtgtg acgaaaattt       660
     agcgttaacc ccaacaacaa caacaacaac aacaacacca gcagcacaac tactagcacc       720
     aacactacca gcattatcac caccagtatc aacaccatca gcaacagcga tagaaaaaga       780
     aatagcacca gaaaaaacac tgcctgaaat agcaccacca acaacaacaa catttttgcc       840
     atcgacctcg gtcaaaaatc accaaacaac accatcagat cagacaatgg atatttctcc       900
     agaggacgac gacgacaacg aaacagcaaa aacggtgaaa cccaagagaa gatcgcgaag       960
     aaaaaagccc tgggatcctc actggaatca tctatatgac gactggtaga agatcgcgcg      1020
     attaattcat ctatttgatt ttttcacgac taataaaact atattttacg aaaaaaaaaa      1080
     aaa                                                                    1083
//
ID   L1BM        repbase;    DNA;    INV; 3187 BP.
XX
AC   AB002279;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   14-FEB-2012 (Rel. 17.02, Last updated, Version 2)
XX
DE   Bombyx mori L1Bm DNA, non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Repeat sequence; L1Bm.
XX
NM   L1BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3187
RA   Ichimura S.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (27-MAR-1997). Sachiko
RL   Ichimura, National Institute of Radiological Sciences, Division
RL   of Biology and Oncology; 4-9-1, Anagawa, Inage-ku, Chiba-shi,
RL   Chiba 263, Japan (E-mail:ichimura@nirs.go.jp., Tel:043-251-2111,
RL   Fax:043-255-6497).
XX
DR   GenBank; AB002279; Positions       1    3187.
XX
FH   Key           Location/Qualifiers
FT   CDS           676..1356
FT                 /product="L1BM_1p"
FT                 /translation="MLTDSRGNGFQIFEFLRDNLVDILLVQETCLKPSRRD
FT                 PKVANYVMVRNDRLTASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISL
FT                 TGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHR
FT                 TNVNGRRLDAFIDDLTFEIVGPPTPTCYSYNIALRPSTIDLALLRNVTLRL
FT                 RSIEGNVRARLRPPTCRYAARSPSQPSHCYEDHGGLE"
FT   CDS           join(1506..1841,1845..2291,2295..2657)
FT                 /product="L1BM_2p"
FT                 /translation="MWRTASNRIRLSPDLRNLLRVRNAAIWAYDRLPTHSN
FT                 RIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTAT
FT                 MPPLLRPSGQPPAFDDDYKAELLALLQEQCTTSPRHADPEHTELVDREVER
FT                 RASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKILPVQLIAM
FT                 LATILNAAMTHCIFPAVWKEADGIGIHKPGKPRNETSSYRPISLLSTIGKI
FT                 YERLLRKRLWDFVYREQNSHRTVRIPLKTLVRTTSAPPHEHILIGLNRRKQ
FT                 IRPAPLLRHREAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRV
FT                 EGTRSRPRQLTAGVPQAPRCPRYYLVCISMIYPGLRRPI"
XX
SQ   Sequence 3187 BP; 802 A; 951 C; 702 G; 732 T; 0 other;
     cgcaagcttg catgcctgca gtccccacgg tctcggcgtg gaaaaagccg ctgccgtata        60
     cgaaggcggg aacggaaacc gcacccccgc ccccgctcgt gacacgcccc gcgcccgcgt       120
     agttccgcgt cggaactcgt attcaaaaat cattcgaatt ttcgaaatat tcatctttct       180
     tccgtccccc gcaaccctct gccgtcaacg acttcgcgct cgtgcgtgac ttcgtcaccg       240
     tgtctaagct gattaaaaaa agcaactgaa agtcgataat cgaatgttgc acatttaaaa       300
     cggtcaactt cgaccgtctg cgatcgttcg cagacgcgat aacgtaggtc ggtaaccccc       360
     aaaaagatcc tcataggttg tccacaagtc caccatttga aaaaagtttc actcaaacca       420
     gaacagcggc tcgcggccgc tttcgatcac atggacgtct acgagtccgt gtcgcgtacg       480
     tgaaggtcct atatcagttc gaagtaccta ttaaattaaa acggaaattt catactttaa       540
     ttataaaatc ttaccggtaa ccaatggcgc aaaaaggtag agaaaaaccg tattccctta       600
     cccctattat tttgtgcgtt tactaggtag gtattcaagg cgtaattttg caatttaatt       660
     cgttagcatt ctataatgct aacggactcg cgcggcaacg gattccaaat ttttgaattc       720
     ctccgcgata atcttgtaga tattctatta gtgcaggaaa cctgtctgaa gccctcgcgt       780
     cgcgacccga aagtcgcgaa ttacgtcatg gttaggaatg acagactcac cgcctccaaa       840
     ggcgggactg ccatttacta taggcgggcc ctgcacgttg tccctctcga tactccctcg       900
     ctctcacata tcgaggcgtc agtgtgccgt atctcgctga cgggacacca gccgatcgtc       960
     atcgcatccg tttatctccc cccggacaag ccccttctga gcagtgacat cgagtcactg      1020
     ttcggcatgg gagactctgt catcctggca ggcgatttaa attgccacca cactaggtgg      1080
     aactgccatc gtacaaacgt taacggtagg cgtctcgacg cgtttataga cgacctcacc      1140
     tttgaaatag tcggtccccc aactccaaca tgttattcgt ataacatcgc gctccgtccg      1200
     agcactatag acctggcatt gcttaggaac gtaactctgc gcttgcgttc catcgaaggc      1260
     aatgtcagag ctcgactcag accaccgacc tgtcgttatg cagctcggtc gccctcacaa      1320
     cccagtcact gttacgagga ccatggtgga ttggaataag ctgggcacgt gcctagccga      1380
     cgccgctccg ccaatcctcc cttacggccc ggattcgaat ccatcccccg aggacaccgt      1440
     cgaatccata aacatcatta ccgatcacat ctcttccgcg atcattagat cttctaaaga      1500
     agtcgatgtg gaggacagct tccaaccgca tcagactgtc ccccgatctt aggaatctct      1560
     taagagttag gaacgcggca atctgggcct acgatcgtct tcccacgcat tcaaaccgga      1620
     ttcagatgcg tcgtctacaa cgcgaagtcc actcccgctt aagcgacgcg cgtaacgata      1680
     attggcatag ttatttagaa caactcgcgc cctcccacca agcatactgg cgactagcta      1740
     ggactcttaa atccgaaact accgctacta tgcctcccct cttacgccct tcaggccaac      1800
     caccggcatt cgatgacgat tacaaagctg agctgctggc ctaactgctg caagagcagt      1860
     gcaccaccag ccctcgacac gcggaccccg aacacaccga gttagtcgac agggaggtcg      1920
     agcgcagagc ttccctgccg ccctcggacg cgttaccccc cattaccacg gacgaagtta      1980
     gagacgcgat ccacaacctc caacctagga aggcaccagg ctccgacggc atccacaacc      2040
     gcgcgctaaa aattttgcca gtccaactga tagcaatgtt ggctacaatt ttaaatgccg      2100
     ctatgacgca ctgcatcttt cccgcggtgt ggaaagaagc ggacggtatc ggtatacata      2160
     agccgggcaa accgagaaac gaaacttcta gttaccgtcc gattagtctc ctctcgacga      2220
     taggaaaaat ttacgaacgt ctccttagga aacgcctctg ggattttgtt taccgcgaac      2280
     aaaattctca ttgacgaaca gttcggattc cgctcaaaac actcgtgcgt acaacaagtg      2340
     caccgcctca cgagcacatt ctgataggac taaataggcg taaacaaatc cgaccggcgc      2400
     ctcttcttcg acatcgcgag gcgttcgaca aagtctggca caacggttta atttacaaac      2460
     tgtacaacat gggagtgcca gacagactcg tgctcatcat acgagacttc ttgtcgaacc      2520
     gttcgtttcg atatcgagta gagggaactc gttctcgtcc ccgtcaactg actgccggag      2580
     tcccgcaagc tccgcgctgt ccccgttatt atttagtttg tatatcaatg atataccccg      2640
     gtctccggag acccatctag cgctcttcgc cgatgacacg gctatctact actcgtgtag      2700
     gaagatgtcg ctgcttcatc ggcgactcca gatcgcagta gccaccatgg gacagtggtt      2760
     ccggaagtgg cgaatagaca tcaagcccac gaaaagcgca gcggtgctct tcaaaagggg      2820
     tcgccctccg aacatcactt cgagcatccc cactccgtag taggcgcgca aatacctccg      2880
     ccgttagtcc catcactctc tttggccagc ccataccgtg ggtctcgaag gttaaatatc      2940
     taggcgtcac cctcgacaga gggatgacat tccgtcccca tataaaaacg gtacgcgacc      3000
     gcgccgcgtt tattctagga cgactctatc caatgctttg tagtcgaagc aaactgtccc      3060
     tccgcaataa ggtaactctc tacaaaactt gtatacgccc cgtcatgacg tatgcaagcg      3120
     tagtgttcgc tcactcagcc cgcacccact tgaaatccct tcaggttatt caatcacgat      3180
     tctgcag                                                                3187
//
ID   L1B_BM      repbase;    DNA;    INV; 939 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   14-FEB-2012 (Rel. 17.02, Last updated, Version 3)
XX
DE   Bombyx mori non-LTR retrotransposon - a consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Repetitive element; pol polyprotein; integrase-like protein;
KW   protease and reverse transcriptase-like protein; L1B_BM.
XX
NM   L1B_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Ichimura S., Mita K. and Sugaya K.;
RT   "A major non-LTR retrotransposon of Bombyx mori, L1Bm.";
RL   J. Mol. Evol 45(3), 253-264 (1997).
XX
RN   [2]
RA   Abe H., Ohbayashi F., Shimada T., Sugasaki T., Kawai S.
RA   and Oshiki T.;
RT   "A complete full-length non-LTR retrotransposon, BMC1, on the W
RT   chromosome of the silkworm, Bombyx mori.";
RL   Genes Genet. Syst 73(6), 353-358 (1998).
XX
RN   [3]
RA   Abe H., Ohbayashi F., Shimada T., Sugasaki T., Kawai S., Mita K.
RA   and Oshiki T.;
RT   "Molecular structure of a novel gypsy-Ty3-like retrotransposon
RT   (Kabuki) and nested retrotransposable elements on the W
RT   chromosome of the silkworm Bombyx mori.";
RL   Mol. Gen. Genet 263(6), 916-924 (2000).
XX
RN   [4]
RA   Ogura T., Okano K., Tsuchida K., Miyajima N., Tanaka H.,
RA   Takada N., Izumi S., Tomino S. and Maekawa H.;
RT   "A defective non-LTR retrotransposon is dispersed throughout the
RT   genome of the silkworm, Bombyx mori.";
RL   Chromosoma 103(5), 311-323 (1994).
XX
RN   [5]
RA   Nakajima Y., Hashido K., Tsuchida K., Takada N., Shiino T.
RA   and Maekawa H.;
RT   "A novel tripartite structure comprising a mariner-like element
RT   and two additional retrotransposons found in the Bombyx mori
RT   genome.";
RL   J. Mol. Evol 48(5), 577-585 (1999).
XX
RN   [6]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (31-MAY-2004).
XX
DR   [5] (Consensus)
XX
SQ   Sequence 939 BP; 227 A; 289 C; 220 G; 199 T; 4 other;
     ctaccaccct gggacagtgg ttccgaaaat ggcgcataga catcaaccca gcgaaaagca        60
     cagcggtgct ctttcaaaag gggtcgccct ccgaacacca cgctgagcat ycctcccgcg       120
     attaggagca gcaatacccc cgcctcacac cgttcgcccg atcacgctct tcggccaacc       180
     cataccgtgg gccaggaagg tcaagtacct gggcgtcacc ctcgatgcaa cgatgacatt       240
     ccgcccccat ataaaaacgg tccgcgaccg tgccgccttt attctcggaa gactctaccc       300
     catgatatgt aagcggagta aaatgtccct tcggaacaag gtgacactct acaaaacttg       360
     catacggccc gtcatgacct atgcaagtgt agtgttcgct cacgcggccc gcacacactt       420
     aaacaccttc caaatcattc aatcccgttt ttgcaggata gccgtcggag ccccgtggtt       480
     cgtgaggaac gtcgacctac acgacgacct ggacttagaa tccatcagta aatacatgaa       540
     gtcagcgtcg gaacgccact tcgataaagc ggcacgacac gagaaccccc tcatcgtggc       600
     cgccggtaac tacattcccg atctgcggac agaatagaaa gcagtcgacg tcgccctaaa       660
     cacgtcattt cggatccttc agatccacta acttttgcat taggtgcttt taggtacact       720
     wsaagcaggc ttagggaccc cggtcaccgt tctcgtcgaa cccgtygctt gcgacgaagg       780
     gctcgacgtg caaattaacc ctcagacatc agcccactga gtttctcgcc ggatcttctc       840
     agtgggtcgc gtttccgatc cggtggtaga ttcatttgcg aagcaactgc tcttgctagg       900
     gttcgtgtta gcaacatcgt caggtttgag ccccgtgag                              939
//
ID   L1_Ele12    repbase;    DNA;    INV; 4433 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele12.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4433
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4433
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1191
FT                 /product="L1_Ele12_1p"
FT                 /translation="MSVRRENTFRIDYANVPKKPSFEELHDFVGSALGLSY
FT                 EQVVQLQPSRALGCAFVKVVDLELAQKVVAENDNKHVXEVDGKTYKLRITL
FT                 EDGAVEVKLTDLSEDITNDQISEFLSAYGEVLSVTEQVWDSKYRFGGIPTG
FT                 TRIVRMFVKRNIESYITIDGQTTNVVYFGQLHTCRYCNEYVHNGISCVQNK
FT                 KLLVQKTYANVAKQAESNPSVAKPKATKQKTSFAKLFGPKPREVQQQEPST
FT                 KTTTVTEIFPSLPKTNVSCPTGVTPIGQILTRANLAEQRKNLMPPPVLPQN
FT                 LSTTSRMSTRQASDGNETDISSASNSSKRRSGRPPGKKQRQNNEDDASEEL
FT                 AGQF"
FT   CDS           1194..4361
FT                 /product="L1_Ele12_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAFNSYNIASININTITNTTKINALRTFLRMLEIDIA
FT                 FLQEVENEQLLLPGYHVVCNVDHTRRGTAIALKEHVNFSNVEKSLDGRLIA
FT                 LRVQNTTLCNVYAPSGTAFRAERERFYHNTLAYYLRHSSEHILLAGDFNCV
FT                 LRQCDATGHNPSPALHTTVQQLKLLDVWEKLRPSLPGYTYITHNSSSRLDR
FT                 MYVSQSLRSHLRSTDIHVCSFSDHKALTARICLPYLGREPGRGFWSLRPHL
FT                 LTAENVQEFQLRWQYWTRQRRNFGSWMQWWMSVAKPKIQSFFRWKSKTAFN
FT                 DFHREHQRLYSNLRQAYDNYHQNPAVLPSINRIKAQMLTLQRNFTQTFVRI
FT                 NESYVAGEPLSTFQLGERRRRKTVITQLRDENNNPIDGSEAVERHMLEFYR
FT                 ALYATGEATEVMDEFACPRVIPENDPTSESCLSEITPADIYAAIKTSSPNK
FT                 SPGGDSIPREFYLKTFDVIWRELTLVMNEALAGNFPADFVDGVIVLVKKKG
FT                 NDQTAHSYRPISLLNCDYKIFSRILKQRLENVMRTHRLISSGQKCSNSGRN
FT                 IFQATLSLKDRIAKLKHTKQRGLLASFDLRHAFDLVDRAFLARNMCSLGFN
FT                 PAFVRLLTKIGELSSSRLLVNGYLSESFPIQRSVRQGDPISMHLFVIYIQP
FT                 LIKRLEEIGGPDLVVAYADDISVISTSKVRLERMRETFHRFERVSGAKLSL
FT                 TKSSSISVGYTDDMPLTVPWLKNEYSVRILGVTFVNSIRLMNKLNWDEIVG
FT                 KFTRLVYLHIPRTLTLHQKIILLNTFITSKVWYIASVLSPSAAHKAKITAT
FT                 MGNFLWRGIQARVPMHQLARCREAGGLKLHLPAMKCRALLLNRHVRDIDSL
FT                 PFYKSFLNQNNPNPPSDCPCLKLILNDFPLLPPLVQENPSANGIHSVYLEE
FT                 TDEPKISREHPEANWRKIWANISVRQLNSAQRSLLYLLINAKLEHRRLWFR
FT                 MNRTDGENCLHCNCALETLEHKLSECVRVEAAWRLLQRNITTLLNGWRILT
FT                 IDDLLRPQLDGVAKWKRTRILKMFQQYVFFIMECNDAIDLVALEIEIQHA"
XX
SQ   Sequence 4433 BP; 1278 A; 1096 C; 976 G; 1082 T; 1 other;
     cagtttgcgc tcaacttcca tgcagaacag ttgtgtttct cgctggaagc cttaagctag        60
     ctatcgatta ttctccctat cgtttaaaat accgtaaagt ttgtttcgcc gttccgtttc       120
     gtcgcgagta gtaccgcggg tggtgccgcg atgagtgttc gacgcgaaaa cacgtttcgc       180
     attgattatg caaacgtgcc gaagaagcca tcctttgagg agcttcacga ctttgttggc       240
     tcagctttgg gtcttagtta cgaacaagtt gttcaactac aaccgagtag agcactcggg       300
     tgtgcgtttg tgaaggtcgt tgacctggaa ctggcgcaaa aagtggtagc cgaaaacgac       360
     aacaagcacg taascgaagt agatgggaaa acctacaaac ttcggatcac actggaggac       420
     ggagctgtgg aggtcaagct gaccgatctg tccgaagata tcacgaacga tcaaatttct       480
     gagttcctca gcgcatacgg agaagttctc tctgtcaccg agcaagtgtg ggacagcaaa       540
     taccgcttcg gtgggattcc tacaggtact cgaattgtac gaatgtttgt gaaacgcaac       600
     atcgaaagct acatcaccat agatggacaa accacgaacg ttgtttattt cgggcagctc       660
     cacacatgtc gctactgcaa cgaatatgtc cacaacggta tctcttgtgt gcaaaacaag       720
     aagcttctcg tacagaagac ttacgccaac gtggcgaaac aggccgagtc aaacccgagc       780
     gtagcgaaac ccaaagcgac aaagcaaaaa acttcgttcg ctaaactttt cggaccaaag       840
     ccccgagaag tacagcaaca ggagccctcg actaagacaa caaccgtaac cgaaatcttc       900
     ccctccttac cgaaaacaaa cgtatcgtgc cccaccggcg tgacgccgat tggtcaaata       960
     ttgacaagag cgaatctagc agaacaacga aagaatctca tgccaccacc ggttctccca      1020
     cagaacttgt cgacaacaag cagaatgtct acccgccaag ccagcgacgg gaatgagacc      1080
     gatatatcat ctgcatcgaa tagtagcaag cgccgaagtg gtcggccgcc gggtaaaaag      1140
     cagcgacaga acaacgaaga cgatgcgagc gaggagttag ctggtcagtt ctaatggctt      1200
     tcaacagtta taacatcgct tcgatcaaca ttaacacaat caccaacact actaaaatca      1260
     atgcactccg aacgttcctt cggatgctgg aaatcgatat cgcattttta caggaagtgg      1320
     agaatgagca gctcctctta cctggctacc acgtagtgtg taatgttgat catacgagaa      1380
     ggggaacggc aatagcgctg aaagagcacg tcaacttctc aaacgtcgag aaaagtttag      1440
     acgggcgact catcgctctt agagtgcaaa atacaacgct ttgtaacgtt tacgctccat      1500
     caggcacagc atttcgtgct gagagagagc gtttctacca caacactctc gcatactatc      1560
     tccggcattc gtcagaacac atcttgctag cgggcgattt taactgtgtt ttgcgacagt      1620
     gcgatgccac gggccacaat cccagccctg cattgcatac aaccgtacag caacttaaac      1680
     tcctcgacgt ttgggaaaaa ctccgtccaa gcctacctgg ctacacctac ataacacaca      1740
     attcctcttc tcgtctggat cgaatgtatg tgagccagag cctacgaagc catttgcgat      1800
     caacagacat acatgtatgc tcattttccg atcataaggc attgacagcg cggatttgcc      1860
     ttccctatct tgggcgagaa cctggtcgtg gattttggtc ccttcgtccg catctgttaa      1920
     cagcagaaaa cgtccaagaa tttcagttgc gctggcaata ctggacccgc caacgccgga      1980
     actttggttc atggatgcag tggtggatgt ctgttgcgaa acctaaaatt caatctttct      2040
     ttcgctggaa atctaaaacc gcttttaatg atttccaccg tgaacaccaa cggctttaca      2100
     gcaatctgcg tcaagcatac gacaactatc atcaaaatcc agcggtgctg ccatccatta      2160
     accgtattaa ggcacaaatg cttactctgc agcgcaactt cacccaaacg ttcgtgcgca      2220
     tcaatgaatc gtatgtagct ggggagccgt tatcaacgtt ccagcttggc gaacgacgta      2280
     ggagaaaaac agtgatcaca cagctgcgcg atgaaaacaa caaccccatc gatggttccg      2340
     aagcagtaga aagacacatg ctcgaattct atcgtgctct ctacgctact ggtgaggcaa      2400
     cagaagtcat ggacgaattt gcgtgcccca gagtgattcc cgagaacgac ccgacgagtg      2460
     aaagctgttt gagtgaaatc acaccagccg acatctacgc agcaatcaag acaagtagcc      2520
     cgaataaatc tcctggggga gactcaatcc ctcgtgagtt ctacctaaaa accttcgacg      2580
     tcatttggcg agaattaacc cttgtcatga acgaggcgct tgctggcaat tttccggcag      2640
     attttgtcga tggggtgatc gtcctagtga aaaagaaggg aaatgaccaa acggcacact      2700
     cgtataggcc aatatcactt ctaaattgcg actacaagat attttctcgc attctaaaac      2760
     agcgtcttga aaacgtaatg cgtacacacc gactaattag tagcggacaa aaatgttcca      2820
     actctggtcg caacatattc caggccaccc tatcattaaa agatcgaatc gccaaactaa      2880
     aacacactaa acagcgaggt ttattggcat ctttcgatct ccggcacgct ttcgatctcg      2940
     tagaccgggc tttcctagct cggaacatgt gctcgctcgg cttcaaccca gccttcgttc      3000
     ggttgctcac caaaatagga gagctctctt cgtcgcgatt actcgtaaat gggtacctgt      3060
     cggaatcatt ccccatccaa cgatcggttc gccagggaga tccaatctcc atgcatctat      3120
     ttgtcatcta tattcagcct ctgatcaaac ggctagagga gataggtgga cccgatctcg      3180
     tggtggctta tgcggatgat atatctgtaa tctccactag caaagtgaga ctagagcgta      3240
     tgagagagac tttccaccga tttgagcgtg tgtctggggc caagctgagc ttgaccaaat      3300
     cgtcgtcaat atctgtggga tacacagatg atatgccact cactgtaccg tggttaaaaa      3360
     acgaatacag cgttcgtatc ttgggagtga cttttgttaa ttccatacgc ctgatgaaca      3420
     agctaaattg ggatgagatt gtgggaaaat tcactcgcct ggtttacctg catattccac      3480
     gtactctcac gctgcatcag aagatcattt tgctaaacac gttcatcaca tcgaaggtgt      3540
     ggtatattgc gtccgtactt tcaccgagtg cagcacataa ggcaaagata acggcgacga      3600
     tgggaaattt cctgtggcgt ggcatccaag caagggtccc tatgcatcag cttgctcgct      3660
     gcagagaagc tgggggcttg aaattacatt tgcctgcaat gaaatgtaga gctcttctcc      3720
     tgaaccgtca tgtgcgcgac attgactccc ttccatttta caaatccttt ctcaaccaaa      3780
     acaatcctaa cccaccctca gactgtcctt gcctaaaact catccttaat gattttccct      3840
     tactccctcc tttggtccaa gaaaacccct ccgccaacgg tatacatagt gtttatctgg      3900
     aggagactga tgagccaaaa atatcgcgag agcacccaga agcaaactgg cgtaaaattt      3960
     gggcaaacat ttcggtgcgt cagttaaatt ctgctcaacg tagtttgctt tatttactga      4020
     taaacgccaa actcgagcat cggcgactct ggtttcgcat gaacaggact gatggagaaa      4080
     attgcctgca ctgcaactgt gcacttgaaa cgctggaaca taaactcagc gaatgcgtac      4140
     gcgtcgaagc agcgtggaga ttattgcagc gaaatataac aactcttctg aatggatggc      4200
     gtatactaac catagatgac ctgttgcgac cccagctgga tggagttgct aaatggaaga      4260
     gaacacgtat tcttaaaatg tttcaacaat atgtcttctt tattatggaa tgtaatgatg      4320
     ctatagacct agttgcactt gaaattgaaa ttcaacatgc ctaaatgatt ataatgtaat      4380
     tatttttttt acgtactaat aaacacattt tatcaattaa aaaaaaaaaa aaa             4433
//
ID   L1_Ele13    repbase;    DNA;    INV; 4522 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele13.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4522
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4522
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 7
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           148..945
FT                 /product="L1_Ele13_1p"
FT                 /translation="MSRRENTFRIDYSSVPKKPSYEDLHRFIANDLGLKKE
FT                 EVLRIQCSRSAGCAFVKVCSLDVAQKVVSDHDNVHEVIVDDKPYKLRIRLE
FT                 DGAVEVKLFDLSEDVSKQKIEEFLSAYGEVLKASEQIWESKYEFSGVPTGL
FT                 WVVRMMVKVNIPSYVTIDGEVTYVQYFGQHQTCRHCEDFVHNGASCVQNKK
FT                 LLLQKLSADKSNKQSYAKVAKQKPSTGAIVRPRSTNTTPSAVARQWTCPIS
FT                 TAAICSRQDVPGPIYLTSQSSPLSP"
FT   CDS           1278..4460
FT                 /product="L1_Ele13_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDHASYNIATININNISSPTKIDALRTFLRTMELDII
FT                 FLQEVENDQLTLPGYNVICNIDHMRRGTAIALKEYIQFSNVERSLDGRLIA
FT                 LRINNVTLCNVYAHSGTAFRAERERFFNSTISYYLRHNTPNVILAGDFNCV
FT                 LRQCDATGSNDSPALKNTTQQLQLCDAWIKLCPRSSGHTYVTANSSSRLDR
FT                 FYVSRGLQQHLRNSATHVCSFSDHQAVTLRICLPSLGRAPGRGFWTLRPHL
FT                 LTQENIEELRYRWQFWTRERRNYASWMAWWLLCAKRKLKSFFRWKSKIAYD
FT                 EFHCEHQRLYSQLRRAYDDFYGQPALLTTIHLLKAQMLALQRKFSKMFTRI
FT                 NESFIAGEDISSFHLGERTRKRTTITRLQSVDGQILHSSEDIEQHLYQYYS
FT                 SLYTEEAVVRNGLNNFFQSERAIPINDATNEACMSAICTEEIITAIKTSAS
FT                 KKSPGPDGIPKEFYLRTFDVIHREINLILNEALSGQFPAEFVDGVIVLVKK
FT                 KGGDETVRSYRPISLLNFDYKLLSRILKSRLETIMRTHDILSGAQKCANSS
FT                 RNIFQATLSLKDRLAQVIKRKQRAKLISFDLDSAFDRVRRAFLHQTMHSLG
FT                 FNGHLVDLLAQIADRASSRLLVNGHLSPPIDIQRSVRQGCPLSMHLFVIYL
FT                 HPLVKELERICEEDLIVAYADDITIVCSSTQRVEMLRETFTRFELASGAKL
FT                 NWRKTKAIDIGLIERDPLVVPWLQTGNTIKVLGVMFTNSVRLMVKLNWDAA
FT                 INNFMHQIRCHSMRCLNLHQRVIIANIFIMSKIWYLSSILSPYAVHIAKIT
FT                 STLGRFIWSGIPTRIPMTQLSRDRKDGGLKLQLPAMKCKALMVNRHVQDLE
FT                 CLPFYKTFVESSDPTQTIPADLPDLKVLCQQYQQLPIQIVQNPSADQIHRM
FT                 YIDQTDKPKVEQEHPEVDWRRIWSSLHWRSFTAAERSNLFMLVNEKGDYRK
FT                 LLYTMRRVDGENCVYCNEPIETLQHKYSECQRVNAAWEFLQRRITAHLGGW
FT                 RRITFNELIRPSLDGIERNRRIHILKLFIHYISFVNNVNNVVDVNSLDFYL
FT                 NVNC"
XX
SQ   Sequence 4522 BP; 1366 A; 1091 C; 932 G; 1133 T; 0 other;
     gtcagttatc gctcaacctc tgagccgaac agtcgtttgt tctaacgcta ttgtttcgct        60
     acgagagtcg atcgcaagct atcctgattt cgtttcgcta tcgcctggcg agtttcgcct       120
     tttttatctt cacgcgcgac aaccgcgatg agtcggcgcg agaacacgtt tcgaattgat       180
     tattcgagtg tgcccaagaa accatcttac gaagacctac accgtttcat tgccaatgac       240
     ttaggtttga agaaagaaga agttctgcgc atacaatgca gcagaagcgc tggctgtgct       300
     tttgtgaaag tatgcagtct tgatgtggct caaaaagtgg tgtctgacca tgacaacgta       360
     catgaagtca tagtagacga caaaccgtat aagctacgaa ttcgtctaga agacggagcc       420
     gtcgaagtga aacttttcga tctttcagaa gacgtgtcta aacaaaaaat cgaagaattc       480
     ctcagtgcat atggagaagt gttaaaagcc tccgaacaga tatgggagag caagtatgag       540
     ttcagtggag ttcccaccgg cttatgggtt gtccgaatga tggtcaaagt gaacattcct       600
     tcctacgtaa ccatcgatgg tgaagttaca tatgtccaat attttgggca gcatcaaacc       660
     tgccgccatt gcgaagattt tgtacacaat ggagcatcct gtgtgcaaaa taagaaactt       720
     cttcttcaaa aactgtccgc ggacaagtct aacaagcaat cgtatgcgaa agttgctaaa       780
     caaaaaccct caaccggtgc tattgtgcgt ccgagatcta caaatacaac tccatcagct       840
     gtggccaggc aatggacatg ccctatatca actgcagcga tttgcagtag acaggatgtc       900
     ccgggcccga tctatctgac aagccaatcg agccctctgt caccatagaa gatggtgtct       960
     ccatcatgtt ctgtggctgt ggctaacaca tcaagtcaat cgtcctccgc ttcgaattcc      1020
     aacaccacga aatcactggc tccaccgact gctgtaaagc aattggttgt ggaactgcct      1080
     ccactgcccg tcggcaaatt caaaaaaccg acattgcaac aacagccaat cgacaacgac      1140
     gaaaacctaa ccagaagcaa tcgttcagat gaagaagaaa ccgatgattc ctcgagctca      1200
     aaaccccgcg gccgtccacc tggtaaaaaa gctcgcacac atgacggaga aggttcgaga      1260
     gaaaggaaac accgctaatg gatcacgcca gctacaacat cgccactatt aatataaaca      1320
     acatttctag cccaacaaaa atcgatgcac ttcggacttt tcttcgcacc atggaactgg      1380
     acataatctt tcttcaagag gttgaaaatg accaactcac tttgccgggc tataatgtca      1440
     tctgcaacat cgaccacatg cggagaggca cagcaatagc tcttaaagag tatattcagt      1500
     tctctaatgt ggagagaagt ttagatggcc gactgatagc acttcgaata aacaacgtca      1560
     ctctgtgcaa cgtctacgca cactccggga cagccttcag agctgaacga gagaggtttt      1620
     tcaatagcac gatttcgtat tacttacgtc acaatactcc gaacgttatt ctggccggag      1680
     acttcaactg tgtcctccgg caatgcgacg caacaggcag caatgatagt cccgctctca      1740
     aaaatacaac tcaacaactg cagctctgtg atgcttggat aaaactatgt ccccgctcta      1800
     gtggccatac gtatgtaaca gcaaactctt cctctcggct cgatcgtttc tacgtgagtc      1860
     gtggtctcca acagcacctt cggaactcag caactcacgt ttgctctttc tccgatcacc      1920
     aagcagtcac tcttcgtatc tgcctcccgt ccctcggcag agctcccgga cgcggtttct      1980
     ggaccctccg ccctcatcta cttacacaag aaaacattga agagttgcgc tatcgctggc      2040
     aattctggac ccgggaacga cggaattatg catcctggat ggcatggtgg cttctctgtg      2100
     ccaaacgaaa actcaagtcc ttcttccgct ggaaatcaaa aatagcgtac gacgaatttc      2160
     attgcgaaca tcaaaggctc tacagtcaac tgcgtcgagc atacgatgat ttctatggac      2220
     aaccggcact cctcaccacc atacacttgt taaaagcaca aatgcttgcg cttcagcgca      2280
     aattctccaa gatgttcaca cgtatcaacg aatcgtttat cgccggggaa gacatctcat      2340
     cttttcatct cggagaaaga acacgtaaac gcacgactat tacccggcta caaagcgtgg      2400
     acggccaaat actacactca tcagaagata tagaacaaca tctctaccag tactattcat      2460
     cgctatatac tgaagaggct gtagttagga acggcctaaa caactttttc caaagtgaga      2520
     gggcaatccc aataaacgac gcaacaaatg aagcctgtat gagtgctata tgtacagaag      2580
     agatcatcac agcaataaaa acaagtgctt cgaaaaaatc gccgggcccg gacgggatcc      2640
     cgaaggaatt ttatctgaga acctttgacg tcatacaccg agagatcaac ttgatactca      2700
     acgaagcact gtccggtcaa ttcccagctg aatttgtaga tggggtgatc gtgctggtca      2760
     agaagaaagg aggagacgaa acggttcggt cgtatagacc gatctcacta ctgaacttcg      2820
     attacaaact tctctctcga atcctaaaat cccgattaga gacaatcatg agaactcacg      2880
     atatactctc cggcgcacag aaatgtgcta attcatcacg aaatatcttc caagcaactc      2940
     tttcgttaaa agatcggttg gctcaggtga taaaacgtaa acagagagcc aaactaattt      3000
     cattcgatct cgattcggcc ttcgatcgag ttcgtcgtgc cttcttacat caaaccatgc      3060
     actcacttgg atttaacgga caccttgtgg atctcctcgc tcaaattgct gatcgggcat      3120
     catctcgact attggttaac ggccatctat cgccacccat tgatatacaa cgctcagtgc      3180
     gacaaggctg tccgctgagc atgcatctat tcgttatata tctacacccg ctcgtgaaag      3240
     agctggagag gatatgtgag gaagatctca tcgttgcata tgccgacgat ataaccatcg      3300
     tttgctcgtc tacccagaga gtagagatgt tgagagaaac tttcactcgt tttgagctgg      3360
     cgtcaggagc aaaactgaac tggcgaaaaa ccaaagcgat cgacattggt ctcatcgaaa      3420
     gagatccctt agtcgtacca tggctacaaa cgggcaacac catcaaagtt ctcggcgtga      3480
     tgtttaccaa ttctgtacgt ttgatggtaa aactcaactg ggatgcagcg attaataatt      3540
     ttatgcatca aataagatgc cactctatgc gatgcttgaa tttacaccag cgggtgatta      3600
     ttgcgaacat attcattatg tctaaaatat ggtacctatc ttctattctc tcaccatatg      3660
     cagtacatat agcaaaaatt acatctacgc taggtagatt tatttggagt gggattccca      3720
     cacgcatccc tatgacacaa ctttcacggg accgtaaaga cgggggactg aagcttcaat      3780
     taccggctat gaagtgtaaa gcacttatgg tgaaccgaca cgtacaagat ctggaatgtt      3840
     tgccgtttta caaaactttt gttgaatcaa gtgatccaac ccaaactatt ccagctgatc      3900
     tgcccgattt gaaagtatta tgtcaacaat atcaacaact tcctatacaa attgttcaaa      3960
     atccatcggc cgaccaaatc catcgcatgt acatcgacca gactgacaaa cctaaagttg      4020
     aacaggagca tcctgaagtt gactggagaa ggatctggtc aagtctccac tggcgaagct      4080
     tcacagcagc agaacgatcc aatctattca tgcttgtcaa cgagaagggc gactatcgaa      4140
     agcttcttta caccatgcgt cgtgtggatg gtgaaaattg tgtgtattgc aacgaaccaa      4200
     ttgaaacgct gcaacacaaa tacagtgagt gtcaacgagt caacgcagct tgggaattcc      4260
     ttcaacgtag aataacagct catctaggcg gatggagacg aatcactttc aatgaattaa      4320
     ttcgaccatc attagatggt atagagagaa atcgtagaat acatatccta aaactattca      4380
     ttcattacat ctcctttgtt aataacgtta ataatgttgt ggatgtaaac tctttggatt      4440
     tctatttgaa tgtgaattgc tgatatgttg taatcaaatt ttaaacaaat cacgtcaata      4500
     aatattttac aaaaaaaaaa aa                                               4522
//
ID   L1_Ele16    repbase;    DNA;    INV; 4463 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele16.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4463
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4463
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 4
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           164..1201
FT                 /product="L1_Ele16_1p"
FT                 /translation="MKRRENTFCIDYSAVPKKPSYEELHAFIGTQLGLTRN
FT                 DVQRIQCSRSTGCAFVKVNNLELAQKIVVEHDSKHAIEVDGQRYTLRLQME
FT                 DGAVAVRLYDLTEGTSREQISEYLSAYGDIISAEPEIWDDKYAFGGIETGV
FT                 WIVKMMVTRNIPSYITIDGDSTYVAYYGQRHTCRHCGEYVHNGTSCVQNKK
FT                 LLMQKLAVDPAARPTYANVTKTKAXSSINTKKPTPVGSPMLLRSAVSKSKD
FT                 TTNLNHADKQPSDGLNVSASAATAAALDFTTTSNPHSMAAPTKTFKVPRLP
FT                 NISGDRGLKNSKGNDDDTDDSTTSSSSRRSQGRPPGKKQKHYAGFEALGDN
FT                 TDL"
FT   CDS           1204..4386
FT                 /product="L1_Ele16_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDFLSYNIATVNINTITNATKLESLRTFIRTLELDIV
FT                 FLQEVENENLQIPGFNVICNVDNMRRGTAIALRDYIHYTHVEKSLDGRLIT
FT                 ARVNNVTLCCVYAHSGSQMRNDRERFFNDTLSYYLRHNTPHVILAGDFNCI
FT                 LRQCDGTSTNSSPSLQATVTQLQLCDVWVKLKSRLPGHTYITHHSASRLDR
FT                 IYVSSDLVSHLRTVDTHCCAFSDHKAVSARICLPSLGRAPGRGFWTLRAHL
FT                 LTAENIDEFQVRWQYWTRQRRNYRSWXQWWLFYAKPKIKSFYRWKSKSVYD
FT                 AFHLEHQRLYAQLQQAYEGLQGNRCMLMDINRIKGKLLTLQRNFTQTFVRS
FT                 NENFLPGETFSSFHLGERRRKKTTIARLSDDQGNVIEGQEEIENHVVAYFQ
FT                 TLYTAEQTDVLAEEEFVSDQAIPNDDAANDAIMNEINTAEIFAAIKTSAAN
FT                 KSPGPDGIPREFYLRSFEVIHREMNLVLNEALAGDFPTEFVDGVIVLVKKK
FT                 GAGTDMHSYRPISLLNVDYKILSRILKLRLETVLRVHRVLNDSQKCGNSDK
FT                 NIFQATLAIKDRIAHLIRRKQPGKLISFDLEQAFDRVSRRFLSRTMTSLGL
FT                 NRQMITLLNAIAERSSSRILINGRLSQTFPIQRSVRQGDPLSMCLFVIYLH
FT                 PLLRQLELVCDTDLIVAYADDITVIVTSTQKIERMRSLFLCFERAAGAKLN
FT                 MMKTTSIDVGFIDQGTLVVPWLNTEVKIKILGVIFANSIRVMIKLNWDAVI
FT                 NNFARLTWLHSLRCLNLNQKVLVLNTFITSKIWYLASILPPYSVHTAKITA
FT                 TMGTFLWSRVPARVPMQQLARNREEGGLKLQLPAIKCKALLVNRHLQELNC
FT                 MPFYKSFIDGNNTTPVTIPADLQCLRLLHHQLGYIPQNIQQNPCAGSILQF
FT                 YLQATEPPKVEKNNPRHDWKRIWRNINDSKFSTKTRSELFMIVNEKIETRR
FT                 LMNILGRTDGENCVHCGARVETVIHKYSECQRVTEAWALVQRRISTIAGGW
FT                 RRFSFVDLLRPTLIGINRNNRIKILNLFSLYITFINLCNDVVDIDVLEFDI
FT                 QCGI"
XX
SQ   Sequence 4463 BP; 1387 A; 1023 C; 962 G; 1089 T; 2 other;
     agtttatgct catcttttga gccaagcaga cggtttgtac tatccgcgcg gtttgtaacc        60
     gatttctgcg agtttttcgt taaagttctc cgcaactgtc gtgccgtggg cacgtggtgt       120
     caatcgtatt agcggccacg attgctccgg gcgattaatc gcgatgaaac gccgtgaaaa       180
     tacattttgt attgattact cggcggtacc caaaaaaccc tcatatgagg aactacacgc       240
     tttcatcgga actcagcttg ggctgacgcg aaatgatgta caacgcatac aatgcagcag       300
     atccaccggc tgcgcgtttg tcaaagtgaa caatctggag cttgcccaga aaatcgttgt       360
     cgaacacgac agcaaacacg caatcgaagt tgatggacag cggtacactt tacgactaca       420
     gatggaagat ggagctgtag cagtgaggct ctacgatctc accgaaggta cttctcgtga       480
     gcagatctct gagtatcttt ctgcatatgg agatatcatc tcagccgagc ccgaaatatg       540
     ggacgacaaa tacgcgttcg gtggtattga aaccggggtc tggattgtaa aaatgatggt       600
     cacccggaat atcccgtcat acataacaat cgatggagac agcacatatg ttgcttatta       660
     tgggcagcgt catacatgtc gccattgtgg agagtacgtc cataatggga catcttgcgt       720
     acagaataag aagctgctaa tgcagaaatt agctgttgac ccagcagcaa gacccacgta       780
     tgccaatgta acaaaaacaa aggctwcgag tagcatcaac accaaaaaac ctacacctgt       840
     aggatcccct atgttgttac gtagtgcagt gtccaaatct aaagatacca ctaacctcaa       900
     ccatgccgac aaacaacctt ccgatggatt aaatgtgtct gcatccgctg ccacggctgc       960
     cgcattggac ttcaccacaa caagcaatcc gcattccatg gcggctccaa cgaaaacatt      1020
     caaagtacca cgactaccga acatcagcgg agataggggt ttgaagaact ccaaaggaaa      1080
     tgatgacgat accgatgact caaccacgtc ctccagcagc aggcgctctc aggggcggcc      1140
     tccaggtaaa aaacaaaaac actatgctgg attcgaagca ctgggagata atactgattt      1200
     gtaatggatt tcttgagcta caatattgcc acagttaata taaacactat aacaaacgcg      1260
     actaaactgg aatcactacg tacttttatc cgaacacttg agcttgacat tgtgttctta      1320
     caagaggtcg agaacgaaaa cctgcaaatt ccaggtttca acgttatttg caacgttgat      1380
     aatatgcgtc gaggcacggc aatcgctctc cgagattata ttcattacac acatgtcgag      1440
     aaaagcttag acggtcgttt aataacagca agagtaaaca acgttacgct ctgttgcgtc      1500
     tacgctcact caggtagcca aatgcgtaat gatcgagaga ggttcttcaa cgatacactg      1560
     tcctactatc tgcgccataa cacaccacac gtgatcctcg ccggtgattt caattgtata      1620
     ctccggcagt gcgatggtac tagtaccaac tctagtcctt ccttacaagc aacagtaaca      1680
     caactgcaac tgtgcgatgt ctgggtaaag cttaagtctc ggctcccagg gcatacatac      1740
     ataacgcatc actcagcatc caggcttgat cgcatatatg tatcgtcgga tctcgtaagc      1800
     catctacgaa cagtggacac acactgttgc gctttctccg accataaagc tgtatctgcc      1860
     cgaatttgtc taccatcact aggtagagca ccaggcagag ggttctggac gctccgcgca      1920
     cacctcctaa cagcagaaaa tatcgacgag ttccaagtcc gctggcaata ctggacacga      1980
     caacggcgga actatcgctc ctggmtacag tggtggctat tctatgcaaa gccaaaaatc      2040
     aaaagtttct accgttggaa atctaagtca gtatatgatg catttcacct agaacatcaa      2100
     cgtctgtacg ctcagctgca acaagcatat gaagggctcc agggaaaccg ttgcatgctg      2160
     atggatatta atagaatcaa gggcaaatta ctaacactcc agcgaaattt tacccagaca      2220
     ttcgtccggt caaacgaaaa ctttctgcca ggggaaacat tctcgtcgtt tcacctagga      2280
     gagaggagaa ggaaaaaaac aacgatagcc cggctgagcg atgatcaagg caacgtaatc      2340
     gaaggccaag aagagattga gaaccacgta gtagcatact tccaaaccct gtacactgcc      2400
     gaacaaacag atgtgttagc ggaagaggaa tttgtgagtg accaggcaat accgaacgac      2460
     gacgcagcaa acgatgccat catgaatgaa atcaacacag ccgaaatttt cgcagcaatt      2520
     aagacaagcg cagcaaacaa atctccagga cctgatggta ttccacgtga gttctatttg      2580
     cgatccttcg aggtgataca ccgagagatg aatctggtac taaacgaagc tcttgctgga      2640
     gacttcccaa cagagttcgt ggacggtgta atagtactag tgaagaaaaa aggagctggg      2700
     accgatatgc attcatatcg accaatatca ctactaaatg tcgattataa aatcctctcg      2760
     cgaatactca aattgagatt ggagaccgtc ttacgagtac atcgagttct caatgattct      2820
     cagaaatgcg gtaactccga caaaaacatt tttcaagcga ctctcgctat caaagataga      2880
     atcgctcacc tgattcgccg taaacagcct gggaaactca tctcatttga tttggagcaa      2940
     gcttttgatc gtgtctctcg gagattccta tcacgcacga tgacttctct tggtctaaat      3000
     aggcagatga taacactact aaacgctatt gcagaacgtt cttcgtctcg aatactgatc      3060
     aacgggagac tatcacaaac ttttcctata caacgatcag ttagacaagg agatccgtta      3120
     tcgatgtgtt tattcgtgat ctacttgcat ccactgttgc gacaactaga actcgtctgc      3180
     gatacggatc taatagtggc ctatgctgat gacatcactg tgatagtgac atcgacacag      3240
     aaaattgagc gaatgagaag cctattcctc tgcttcgaac gtgcagctgg ggcaaagctg      3300
     aacatgatga aaacaacttc aattgatgtg ggcttcattg atcaagggac attggtcgtt      3360
     ccatggctaa acaccgaagt aaaaatcaaa atacttggag tgatctttgc aaattcaata      3420
     cgcgtcatga tcaaactgaa ctgggatgca gttataaaca attttgctcg gctaacgtgg      3480
     ttgcactcac ttcgttgcct taatttaaac caaaaggttt tagtgttgaa tactttcatc      3540
     acttcgaaga tttggtactt agcctcaata ttgccaccat acagcgtaca tactgctaag      3600
     attacggcca caatggggac atttctatgg agcagagttc cagctcgtgt ccctatgcag      3660
     cagttggctc ggaatcgaga agaaggagga ctcaaactac aactgccagc tatcaaatgt      3720
     aaagccctct tagtgaatag acacttgcag gagttgaatt gcatgccgtt ctacaaatcg      3780
     ttcattgatg gaaacaacac gacccctgta accattccag ctgatctcca gtgcttgagg      3840
     ctactgcatc atcaactagg atacatcccc cagaatatcc aacaaaatcc ttgcgctggt      3900
     agcattctcc agttttatct ccaagcaacc gaacctccaa aagtagaaaa gaacaatcct      3960
     aggcacgatt ggaaaaggat atggcgaaac atcaatgact ccaagttttc aacaaagaca      4020
     agaagtgagc tgttcatgat cgtcaacgag aaaatagaaa cgagaagact aatgaacata      4080
     cttggacgga ctgacggaga aaactgcgtg cactgtgggg ctcgagtaga gacggttatt      4140
     cacaaataca gcgagtgcca acgagtcacg gaggcatggg cactggtgca aagaagaatc      4200
     tcaacgattg caggcggatg gaggaggttt tcatttgtgg acttgctgcg accgaccctg      4260
     attggaatca acagaaacaa cagaattaaa atcttgaatt tgttttccct ttatatcacc      4320
     tttataaatc tttgcaatga tgttgtcgac attgatgttc ttgaatttga tatacaatgt      4380
     ggaatttagt ttattatgtg atgtaatatg acaataattt tactcaataa attaaccaac      4440
     tttaaaaaaa aaaaaaaaaa aaa                                              4463
//
ID   L1_Ele17    repbase;    DNA;    INV; 4594 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele17.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4594
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4594
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 6
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1306
FT                 /product="L1_Ele17_1p"
FT                 /translation="MNTRRIRENTFRVEFSNLPKKPTSEEVHAFVAQQLGV
FT                 SRTQLVRLQLSHTDECAFVKVIDLNTAQRIVQTHDNQHDYEMKGVKYKIRI
FT                 RMADGGVDVRLYDLSEHVSDEQVSRHMSAYGEVLSVSELLWSDKHHYAGMA
FT                 TGIRQVKMVLREPIKSYITIDGETTYVQYAKQRPTCRHCGEFMHTGISCVQ
FT                 NKKLLAQKVSVNDRLKRSSYAGAVRGASEGFSANETEEQRSVPLDNNAPFP
FT                 QVQAQVEVPSTSNAAVFPPLPNKESPLAVPQMDVASGTDLVPTQQALEDEP
FT                 STEMNQETPQRTVSIGDISSMSTDESCNGNTLESSIVCNPNGELVVVTTEK
FT                 PLTEGTGKHKNKNSNDTNPFILAKRGRGRSKKH"
FT   CDS           1275..4502
FT                 /product="L1_Ele17_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PNAAEGGPKSIKVDNHSYKIGTVNINNITNQTKTSAL
FT                 HNFIKTQDLDIIFIQEVENDKLDLPGYNIVCNVDNARRGTAIALKHQIKFS
FT                 NVERSLNSRIIALRVHDTITLVNIYAHSGSQYRREREELFNFTLSYYLRHH
FT                 TQHIILGGDFNSVIHSSDATGVSNFSLALKNMVQQLQLHDVVNVLNRENKQ
FT                 FTYITHNSASRIDRIYVSSGLLNNLRRADTHVCSFTNHKALTVRLALPNLG
FT                 REKGRGYWSLRPCVLTTENIEELQLKWDYWTRQRRLYNSWIEWWVHFAKPK
FT                 LKTFFRWKTNQMYAEYNRKYQILYTELREAYDRYLGDAGVLVTINRVKARM
FT                 LKLQREFDTLFIRVNETRVSGEKLSTFQMGECRRKRTTIDSLDIDDNRTIE
FT                 RSEEIEEFIFDYFKNMYAGEEHEVNDEWMCDQTVSPNNEANASCMNDITTG
FT                 EIYSAIKTSASRKAAGPDGITKDFFLKAFDVIHRHLNLALNEVLQGNIPEK
FT                 FLDGIIVLIRKKNCGNTVKAFRPISLLNFDYKVLSRILKARLELILKESEV
FT                 LSPSQKCSNFGKNIHQATLAIKDRIVQLRETKRKGKLISFDLDHAFDRVDH
FT                 HFLFQSMRATGLNPALIELLSNVYARSRSKILVNGHLSPEIQIKCSVRQGD
FT                 PISMHLFVLYLQPLVHKLDQVCDDRDDLVVVYADDITVVTTCIDKIERIKQ
FT                 LFISFGRCSGALLNLNKTYCIDIGHFRTSEPVNIDWLQTSEKMKILGITFC
FT                 NSIRLMQKLNWDALVSKCAKNIWLHKMRDLNLQQKVVLLNTYITSKIWYVS
FT                 SVLAMNKFHAAKLTSLMGSFLWAGIPIRVSMNQLALPYDRGGLKLQLPSIK
FT                 SKALLINRHLKEATALPYYTSILMNAQNPPYLNSLPSNSPCLKLVYQEISY
FT                 LPIQMRDNPTSNALHTYFLNQMDCPKVVSKYQNCNWVAVWRNIKSSQLSSL
FT                 ERSFYYILVNEKIAHAELLFRMQRVDSAICPNCLSGAESLAHKISTCPRIA
FT                 ESWRILQQELLKVYPDKTFNVEELIRPSMKINRVKKIKILKLFVNYVIYIN
FT                 EFNSNIDNTALRSLLGNII"
XX
SQ   Sequence 4594 BP; 1460 A; 939 C; 995 G; 1200 T; 0 other;
     cagttggcct tcgacagccg aagtgttaac acgttgtcga ttcggagcgc aagcatacgg        60
     tcgagttttt tttttctgtg aaacgtttcg tcgcggtaaa tccgtgttcg agtgtagtgc       120
     cggtctcagc accggatgta gtgtttgtag gagtcatctc agaacgttga gtctcgagat       180
     gaatactcgc aggatccgcg agaacacatt ccgtgtggaa ttctcgaatc ttccgaagaa       240
     accgacctct gaagaggtac acgcgttcgt cgctcaacaa ctcggtgtaa gccgaacaca       300
     actagtgaga ctacaactta gccacacaga cgagtgtgcg tttgtcaagg ttattgacct       360
     caacacagca caacgaatag tgcagaccca cgacaaccaa cacgactacg agatgaaagg       420
     ggtaaagtac aagattcgga tccgtatggc ggatggcggt gtggacgtta ggttgtatga       480
     cctttctgag cacgtttcag acgagcaggt cagtcgccac atgtcggcgt atggcgaagt       540
     tctctcagtt agtgagcttc tctggagcga caaacaccac tatgctggta tggctactgg       600
     catacgtcag gtcaagatgg ttctacgtga acccatcaag tcctacatca caatagatgg       660
     agagaccacg tatgtacagt acgccaaaca aagacccaca tgtagacatt gtggcgagtt       720
     catgcacaca ggcatatcct gcgtgcaaaa taaaaagttg ttggcgcaaa aggtgagtgt       780
     caacgatcga ctgaagagaa gttcatacgc tggagcggtg agaggagcgt ctgaagggtt       840
     cagcgcaaac gagacggagg agcaacgaag tgtgccactg gataacaacg cacctttccc       900
     acaagtgcag gcacaggtgg aagtgccttc gacttcaaac gcagcggttt tcccgccact       960
     tcccaataag gaatctccct tggctgtccc acagatggat gtggcatctg gtaccgatct      1020
     ggtgcccact cagcaggcgt tggaggatga gccttcgact gagatgaatc aggaaactcc      1080
     gcaacgaacg gtctcaatcg gtgatatctc atcgatgtcc accgatgaaa gttgcaacgg      1140
     aaacacgctg gaaagctcaa tcgtatgtaa cccgaacggt gagttggtag tggttactac      1200
     tgagaaaccg cttacagagg gtacaggtaa acacaaaaat aagaactcaa acgacactaa      1260
     cccatttatc ttagccaaac gcggccgagg gcggtccaaa aagcattaag gtggataatc      1320
     acagctacaa aattggaacc gtaaacataa ataacataac taatcagact aaaacttctg      1380
     cactacacaa cttcataaaa acacaagatt tggacatcat cttcattcag gaagttgaga      1440
     atgataaatt agatttacca gggtacaaca ttgtttgtaa tgttgacaat gctcggaggg      1500
     gtactgccat agcgcttaaa catcagatca aattttcgaa tgtggaacga agtttgaact      1560
     cgcgtataat agctctaaga gtacatgata cgattacgtt ggtcaatatc tatgctcatt      1620
     ctggctctca ataccgacgt gaaagagaag agctttttaa cttcactctc tcgtattatc      1680
     tcagacacca cacacaacac atcatcttag gtggagactt taattcagtg atccattcta      1740
     gcgacgccac aggtgtcagc aatttcagtt tggcattgaa aaatatggtt caacaattac      1800
     aactacatga tgttgtaaat gttctcaatc gggaaaacaa gcaatttacc tacataacac      1860
     ataactctgc gtcgcgaatt gatagaatct atgttagttc agggctactc aataatctta      1920
     gacgtgcaga tacgcatgtt tgctcattta ctaatcacaa agcgctaaca gtgagactcg      1980
     ctttaccaaa tctagggaga gaaaagggaa gagggtattg gtctcttcgg ccttgcgtgc      2040
     ttactacaga gaatatcgag gaactgcaac tcaaatggga ttattggacc agacagagac      2100
     gactatacaa ttcatggata gaatggtggg tacactttgc aaaaccaaag cttaaaactt      2160
     ttttcaggtg gaagacgaac cagatgtatg cagaatacaa tcgtaagtat caaatactct      2220
     ataccgagct ccgagaagct tatgaccgat atttgggaga cgcgggagtg ttggtgacta      2280
     ttaatcgggt taaggcacgc atgttaaagc tgcaacgcga gttcgacaca cttttcattc      2340
     gggtcaatga aacacgagtg tcgggggaaa agctttcgac atttcaaatg ggtgaatgta      2400
     gacggaagag aacgactata gatagtttag acattgatga caatcgaacc attgagcgtt      2460
     ctgaggaaat cgaagaattc atttttgact attttaaaaa tatgtatgcg ggggaagaac      2520
     atgaagtgaa cgacgagtgg atgtgtgacc aaacagtgtc accaaacaat gaagccaatg      2580
     ctagttgcat gaacgacata actactggag agatttacag tgctatcaag acaagtgcat      2640
     ctcgaaaggc tgcgggtcct gatggcatca cgaaagattt tttcctcaaa gctttcgatg      2700
     ttattcacag acatttgaat cttgcattga atgaagttct gcaaggaaac attccagaaa      2760
     aattcttaga tggaatcata gttctcatta ggaaaaaaaa ttgcggcaac acggtgaaag      2820
     ctttcaggcc aatatctttg ttgaattttg actataaagt cctctcgagg attctcaaag      2880
     ctcgtctgga actcattctc aaagagagtg aagtgcttag cccctctcaa aagtgctcaa      2940
     attttggaaa aaatattcat caagcaacgc tcgctatcaa ggatcgaata gtgcaattgc      3000
     gtgaaaccaa gagaaaagga aaattgattt ccttcgatct ggaccacgcc tttgataggg      3060
     tcgaccatca ttttctgttt cagtcaatga gggcgacagg tttaaatcca gcacttattg      3120
     aacttttgtc aaatgtctat gctcgatctc gatcaaaaat ccttgtgaac ggtcatctgt      3180
     caccagagat tcagataaaa tgctcggtcc gccaaggtga tcctatatcg atgcaccttt      3240
     tcgtgctata tttacaaccg ctagtacata agcttgacca agtttgcgat gatcgcgatg      3300
     atttggtagt agtctacgca gacgacatta ccgttgttac aacgtgcatt gacaaaattg      3360
     agcgaatcaa acagcttttc atttctttcg gcagatgttc cggagctctt ctcaatttga      3420
     acaaaacata ttgcattgac attggtcatt ttagaactag tgagcctgtt aacatagatt      3480
     ggttgcagac gtccgaaaaa atgaaaattc taggtatcac gttttgtaac tcaattagat      3540
     tgatgcaaaa attgaactgg gatgccctag tttctaaatg tgccaaaaac atatggcttc      3600
     acaagatgag ggacttgaat ctgcaacaga aagtcgtgct gttgaacacc tacatcactt      3660
     ctaaaatctg gtatgtttcc tcggtactag caatgaacaa attccatgca gcaaaactaa      3720
     catcacttat gggatccttt ttgtgggctg ggataccaat ccgtgtatca atgaatcaat      3780
     tagcactccc atatgataga gggggactta aattacaact tccgtctata aaatctaaag      3840
     cacttctgat aaatcgccat ttaaaggaag ccacagctct tccatactat acctctattt      3900
     taatgaatgc tcagaatcca ccgtatttga actcacttcc aagtaactct ccgtgtttga      3960
     agcttgtgta ccaagaaatc tcttatcttc cgattcagat gagagataat ccgacatcga      4020
     atgcattgca cacctacttc ttaaaccaga tggactgccc taaggtggta agtaagtatc      4080
     aaaactgcaa ctgggtagcg gtttggcgga acatcaagtc aagtcagcta tcgtcactcg      4140
     aaagaagctt ctattacatc ctcgtgaatg aaaaaattgc tcatgcagaa ctattgttca      4200
     gaatgcaaag ggtagactct gcaatatgtc caaattgttt gtctggagca gaaagcttag      4260
     ctcataaaat atcaacttgt cctagaatag ccgaatcgtg gaggattctc cagcaagagc      4320
     ttttaaaagt ctaccctgat aagacattca acgtcgagga gctgatccga ccatcaatga      4380
     aaattaatag agttaaaaag atcaagatac tgaagctttt tgtaaactat gtcatatata      4440
     ttaacgagtt taatagcaat attgacaaca ctgcactgcg gtccttgtta ggaaatataa      4500
     tatagaagtt gtagtatata attagatata attacttaaa tgtataaatg tattaactga      4560
     accaaataaa gattttataa aaaaaaaaaa aaaa                                  4594
//
ID   L1_Ele19    repbase;    DNA;    INV; 4560 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele19.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4560
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4560
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 7
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           158..1285
FT                 /product="L1_Ele19_1p"
FT                 /translation="MNSSRRRENTFRIEFSNLPKKPSFENIHRFIAEALGL
FT                 SKTQVVRVQINHYLWCAFVKCVDLATAQSIVQQHDNRHEIDISGKKYKLRI
FT                 LMEDGAVEVRLHDLSEDVSDESIMDYMSQYGQVLAIEELAWSDKYAFDEIP
FT                 SGIRLVKMILKNPIKSYITVEGETTYVTYFGQKHTCRHCHEYIHSGIPCTQ
FT                 NKKLLVQKASVNERLNTNTRANPKTGSYANAVKTNAGPTFVLPSTSTSPPA
FT                 PSPPTPSPPTTSPAPPLSLLQPAQADVADGAPAIDMECSSVQAASGSGPSL
FT                 GSEMTTSPEQSFPSASSEVVIDDGPFKMPHVSNTSTDMNLDDEISDSSLAS
FT                 AGSTSRWTRSKKYKFDNIQPKKASHDRRSTKQP"
FT   CDS           1298..4501
FT                 /product="L1_Ele19_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDFHSYNIGTININNITNENKLNALRHFVRQQDLDII
FT                 FLQEIENDSISIPGYNSVCNVDHTKRGTAILLKDYIKYSHVERSLDSRLIS
FT                 VRINENITLCNIYALSGSQHRASREAFFNNTVAFYLRNQAEYTIMSGDFNA
FT                 VTHPKDSTGVSNYSMALKNTTQQLRLLDIWEILHGNRVEHTYICHNSASRI
FT                 DRIYISSNLRPHVRTTTTHACSFTDHLALTARLCLPTMGREHGRGFWSLRT
FT                 NVLTDETLEEFERKWSYWTRQRRHYSSWMLWWTAFVKPRLQSFFRKQSKDM
FT                 SREFYTQHQHLYTQLREAYNNYHGNPAALVEINKIKSKMLMLQRKNTQMFQ
FT                 KINETCLAGEPLSVFQLGERIRKRTVINEIEVSNGNIIEDPLAIQEHIVNY
FT                 FKDLYSETTRLEARETFTCERQIPANSNKNNTSMDPITTNEIFAALKGSAA
FT                 RKSPGSDGIPREFYLWAFDIIHRELNLLLNEALGGNILPEFVNGIIVLVRK
FT                 KNTGNTIKSFRPISLLNYDYKLLARILKSRLDGIMTDHNIISNVQKCSNGK
FT                 RTIFGATLALKDKIAQLRKHRRSGKLLSFDLDHAFDRVDRRFLFGTMDSLG
FT                 FNAGLIHLLSSIAELSSSRLLINGHLSAPFTIQRSVRQGDPLSMHLFVIYL
FT                 HPLLHRIQEVCNGQFDLVVAYADDVTMISTCVEKIERVKQLFLNFGRCSGS
FT                 LLNLEKTSALDVGYITARNRVDVQWTQTTDSVKILGVIFTNSIRRMIILNW
FT                 NTLIAKMAQQIWLHKMRFLSLHQKVLLMNTFISSKMWYISSILPIYKLHIA
FT                 KITSLISSFLWQGQVVRVSMHQLALPKEKGGLNLHLPAFKCRSLLMNRHLC
FT                 EMECMPFYRTFIESTQNPPNLAALPTDCPCLKQICQEFAYISQDVLAISTS
FT                 STLHRRLLSQIETPKVMRESPNLNWKRIWLNVNSRQLNSLERSCYYLLVNK
FT                 KILHAKLLHRMNLLPSPVCEHCGVADEDLQHKYXTCTRTANAWTIXQQIIN
FT                 VFVPNRALSFEDMMKPTLLCLEQRTKIKIMKMFICYVNYINSEDNLIQLDS
FT                 LKFHLEIICNE"
XX
SQ   Sequence 4560 BP; 1440 A; 1029 C; 896 G; 1192 T; 3 other;
     agttagcttc tgtcactcaa gttgaacaga cacgtttcga aagaaagccg gctatttaaa        60
     atcgttttta tacggattgc tcgaagtgag cttggcggtt aatccgcttc ggtcgtttcg       120
     cgttacgttt cgccccgcgg gtgatatttg tgtaaccatg aattcatcac gccgacgcga       180
     aaacacgttt agaatagaat tttccaatct accgaagaag ccaagcttcg agaacattca       240
     ccgcttcatc gctgaagctc tcggtctatc caaaactcaa gttgtgagag tgcaaataaa       300
     ccactatcta tggtgcgcat ttgtaaaatg tgtcgatctt gccacggcgc aatcaattgt       360
     ccaacagcac gacaatcgtc atgaaattga catctctggc aaaaagtaca aactcaggat       420
     cctaatggag gatggcgccg tagaggttcg gctacatgac ctttcggaag atgtttctga       480
     cgaatctatc atggactaca tgtcacaata cggacaagta ttagcaattg aagagcttgc       540
     gtggtctgac aagtatgcgt tcgatgaaat tccttcagga attcgattgg tgaaaatgat       600
     tttgaagaac ccgatcaaat catatatcac cgtggaaggc gagactacat acgtcacgta       660
     ttttggccag aaacatacat gtaggcattg ccacgaatac attcactctg gcattccctg       720
     cactcagaat aagaaacttc ttgtgcaaaa agcgagtgtc aacgaacgac tcaatactaa       780
     tactcgggct aatccgaaga ccggttccta tgccaatgca gttaaaacga acgcaggacc       840
     taccttcgtt ctcccttcta catcaacgtc accaccagca ccatctccgc caacaccgtc       900
     accgccaaca acatcacctg cgccgccgct atcgctactt caacctgctc aagcagacgt       960
     agcggatgga gctcccgcta ttgatatgga atgcagctcg gtacaggcag cttcgggatc      1020
     aggtccgtca ctaggatcag aaatgactac gagtccggaa caaagttttc catcggcgtc      1080
     ttctgaagtt gttatcgatg atggcccctt caaaatgccg catgtttcaa acacttcaac      1140
     cgatatgaat ttggacgacg aaatcagcga tagctcttta gcctctgcgg gtagcacaag      1200
     cagatggacg cgttcgaaaa aatacaagtt tgataatatc caaccgaaaa aagcaagcca      1260
     cgaccgacga tctacgaaac aaccgtaaat atcactaatg gatttccata gctataatat      1320
     tggaaccatc aatattaaca acataacaaa cgaaaacaaa ctcaacgcac tccgacattt      1380
     cgtgagacaa caagatctcg acatcatatt tctgcaagaa attgagaacg attctatatc      1440
     catccctgga tataactctg tttgtaatgt cgatcatacc aagagaggga cggctattct      1500
     gctgaaagac tatataaaat actcacacgt tgaaagaagt ttagattcta ggctaatttc      1560
     tgtacgtatt aacgaaaata tcactctgtg caatatatac gcgttatctg gaagtcaaca      1620
     ccgagctagc agagaagcat ttttcaacaa cacagttgca ttttatctac ggaatcaagc      1680
     ggaatacact atcatgagcg gagacttcaa tgcagtaact cacccgaaag actccacagg      1740
     tgttagtaac tacagtatgg ctctcaaaaa tactacacaa cagctacgtt tactcgatat      1800
     ctgggagata ttacatggta accgagtcga acacacctat atttgccaca attcggcatc      1860
     ccgtattgat aggatctaca tcagctccaa cttacgtcct catgtgagaa caacaaccac      1920
     acatgcgtgt tcgtttacag atcacctggc gctgacggct agactctgtt tacctacaat      1980
     gggtagagag cacggaagag gtttttggag cttacgtacc aatgttttga ctgatgaaac      2040
     tctggaagaa ttcgagagga aatggagcta ttggacacga cagcgaagac attatagctc      2100
     atggatgctc tggtggactg cttttgtaaa gccaagactg caatctttct ttcgtaagca      2160
     atctaaggat atgtcaagag aattctacac ccagcatcaa catctgtata ctcagcttcg      2220
     tgaagcctac aacaactacc atggcaatcc tgccgcgcta gtggagatta acaagatcaa      2280
     atccaaaatg ttaatgttac aacgaaagaa tacgcagatg ttccaaaaaa tcaatgaaac      2340
     ttgccttgcc ggtgagcctc tatcagtttt ccagttggga gaaagaattc gaaaacgcac      2400
     tgtaattaac gaaattgagg taagcaacgg taacatcatc gaagacccat tagctatcca      2460
     agaacacatt gtcaactact tcaaagacct gtactcagag acaaccagac ttgaagcccg      2520
     ggagaccttc acttgcgaga gacaaatacc tgcaaacagc aataaaaaca acacttcgat      2580
     ggaccctatc actaccaacg aaatattcgc ggcactcaaa ggcagtgcgg ctcgtaaatc      2640
     tccaggctca gatggaattc ccagagaatt ctatttatgg gctttcgata taatacacag      2700
     agagctcaat ttgctcttaa acgaagcact aggcggtaat atcttgccgg aattcgtgaa      2760
     cggtataata gtgttagtac gtaaaaagaa tacgggcaat accattaaat ctttccgtcc      2820
     aatttcgtta ctaaattacg actacaaatt gctggcacga atacttaagt ccagacttga      2880
     tggtattatg actgaccaca acatcattag caatgtgcag aagtgttcta atgggaaacg      2940
     aacgatcttc ggagcgactc ttgctctaaa agataagata gctcaactac gtaaacatcg      3000
     gcgttctggg aaactcttgt cgttcgatct ggaccatgca ttcgatcgag tcgatcgtcg      3060
     ttttctcttc ggtacaatgg attctcttgg cttcaacgct gggctgatac atctactatc      3120
     atctatcgcg gagctttcat catcacgact actgataaac ggtcatctct ctgcaccgtt      3180
     cacgatacag cggtctgtac gtcagggaga ccctttgtcg atgcacctgt tcgtcatata      3240
     tctccatcca cttctgcatc gaattcaaga agtctgtaat ggtcagttcg atttggttgt      3300
     tgcgtatgcc gacgacgtaa cgatgatatc gacgtgtgtg gagaaaatcg agagagtaaa      3360
     gcaactattt ctgaacttcg ggagatgctc aggttcccta ttgaacttag agaaaacatc      3420
     ggctctagat gtgggttaca taacagctcg caatagagta gatgtacagt ggacgcagac      3480
     tactgacagt gtcaaaatcc taggagtcat ctttactaac tcaattcgac ggatgattat      3540
     tcttaattgg aacacactga tagcgaagat ggcccagcaa atttggctcc ataaaatgcg      3600
     atttctttca ctgcatcaaa aagtattgtt gatgaatacc ttcatctcgt caaagatgtg      3660
     gtatatctct tcaatattgc cgatctacaa actccacatc gcaaaaatta cgtcgctcat      3720
     ctctagcttt ttgtggcaag gacaagttgt aagagtatct atgcatcagt tagcgcttcc      3780
     taaagagaaa gggggcctga accttcacct cccggccttc aaatgcagat cgcttctaat      3840
     gaacagacat ctttgtgaaa tggaatgtat gccgttctat agaaccttta tagaatcaac      3900
     acaaaacccc ccaaacctgg cagctctccc aacagactgc ccatgcctca agcaaatttg      3960
     ccaagaattt gcttacattt ctcaggatgt gctagcgatt tcaacatctt caacattaca      4020
     tcgtcgtttg ctgagtcaaa tagaaactcc caaggtcatg cgtgaatctc caaatttgaa      4080
     ctggaagcgg atttggctca acgtaaactc gcgtcaactg aattcgctag aaagaagctg      4140
     ttattatttg ctggtaaata agaagatctt acacgctaaa ctcttacatc gaatgaactt      4200
     gctaccgtca ccagtctgcg aacactgtgg agtagctgac gaagatttgc agcacaaata      4260
     cgmaacctgc acgaggacgg caaatgcatg gacgatattk caacaaatta tcaacgtatt      4320
     tgttcccaac agagctctta gttttgaaga tatgatgaaa ccaaccctwc tatgtttaga      4380
     acaaagaact aaaatcaaaa taatgaaaat gtttatttgc tatgttaatt acataaactc      4440
     tgaagataat ttaattcaat tggattcgtt aaaatttcat ttagaaataa tttgcaatga      4500
     ataactttgt tactatgtaa agctttaaaa cttgactaat aaaatatata aaaaaaaaaa      4560
//
ID   L1_Ele21    repbase;    DNA;    INV; 4574 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele21.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4574
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4574
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           127..1242
FT                 /product="L1_Ele21_1p"
FT                 /translation="MASSPYHLTSNGPRVNTLVIDLANLPAKKINMEMIAK
FT                 FIHDKLRIQFSSIQSLQHNTGKSLVFIECQTEELAIAVTERNDGNYEISVD
FT                 NVKYKVNVFMEDGATTVRVHDISPQTENSSIEKELERYGDIVWLKEEMWTE
FT                 PAVLKGIPNGVRSVRIRLHTAIPSYININGEVTLVTYKHQQQTCRHCGKPV
FT                 HWGRKCIEAGYMEMQLNGGNISDRLRASGVDYAGVLKTSNQTGTSQEIRNS
FT                 VSSEAEKNRVDPNYTNLTQLFNKSSSQGQDRKKITTNTVESNEKLAIKSTN
FT                 TNTNSKFQAPSENTESSAAKTATSKLARGSMAVNPIASGIEVSNNFDGLDI
FT                 SDDDMDGTHASGCKSPSRKKIGLSVDSSE"
FT   CDS           1142..4444
FT                 /product="L1_Ele21_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVSISRMMIWMVLMQVVASHLLERRLVYRWILLNNHK
FT                 MDMLSYNIGTLNINGIANENKINALRSFIYLMDLDILMLQEVHEHITISGF
FT                 DTFSNIDLNKRGTAILVKSHINTSHVQKSIDSRVISLKIENHTTICNIYAP
FT                 SGTAQKSLRERFFTDTIHYYVNNGDGRLIVGGDFNSVIDKKDANHGSNFSQ
FT                 SLKFVVQSLKLNDVWQIVHKNAVDFTFIRSGSGARLDRIYVSDDLKGYVST
FT                 VRTNVCAFSDHKIVILKLKLPNLGRPFGRGLWRLNDLALTDENLAEFREKW
FT                 IYWVRQKRYYDSWFSWWNEYAKIKTVSFFKWKYSTLKRRYSDTMEFFYSAL
FT                 NILYNDYLTNPDVLSEINKVKAKMLALQKEMSNNFYGRSETFISGENSSIF
FT                 QLGEQKQRREKTHIKTLRINGQDEADIEIVTEEITTFFKNLYTKSNVVIEN
FT                 SFEPQKTIQDNFPANSRLMDPISEEELFQAIKTSQSRKCPGKDGLTKNFYI
FT                 KCWEIIKTELLLVVNEVINGKTSTKFLEGVIVLIRKKKTNNDISGFRPITL
FT                 LNFDYKLVSRILKNRLVKLNEALLSNTQKCSNGSRTIFEATCGIRNKIVEI
FT                 NLKRKKGLLISFDLEKAFDRVNHEYLLATLSKMGINNRFVDFMRLCQNNTY
FT                 SRILINGNMSETIRIERSVRQGDPLAMILFCFYLEPLLQKIQNICEDEMDL
FT                 LVGYADDISLIIFDVRKLSVVKQIFDNFELVAGAKVNYNKTKAMRIGSNNN
FT                 FILPDWLEHEEYLKILGIWFNNNSNAMIQKNWDEILQNLRYMLWNSQFRNL
FT                 NLIQKIIFLNTYASSRMWYTASTVSVHKKTLTKIKSLFGNFLWYRCSLRIS
FT                 FNQLCLPRKRGGLGLISPEHKCKSLLINRFLRLRQSSPFLHNYTDRIENPP
FT                 NMKGLPCNAHFLKTVYLELAYISENIKNNPTSQSIYNHFCSNLPKPHITEK
FT                 YPQFRWDIIWKNVFSRQISSDHQVTWFLLINEKIICAEKQFRFGSRVSPNC
FT                 VYCPQEIEDLKHRFSTCPKIRNCWWFTVTQIKLLNRRKFRNISFDDFKFPV
FT                 LRTYNQLERKIASKMFLEFLRYAIANDREDVSVEELKFIMNCNI"
XX
SQ   Sequence 4574 BP; 1611 A; 724 C; 922 G; 1317 T; 0 other;
     cagttccgtt ttagctatcg ttcagagagg acgtctttct attgtgcgga gtgtgaaaca        60
     aaagtgattt tttctccagt ttcggctggt acgacaaaca ataaaccaca gaacaaacac       120
     gaaacaatgg cttcatcgcc gtatcatcta acgtcgaacg gaccacgtgt taacacgttg       180
     gttatcgatc ttgcaaattt gccagccaag aagatcaaca tggaaatgat tgccaagttc       240
     atccacgaca agttgagaat tcagttttcg agcattcaat cgctacagca taacacagga       300
     aagtcattgg ttttcatcga gtgtcagacg gaagagctag ccatagccgt taccgagcgt       360
     aatgacggaa actatgagat cagcgtggac aatgtaaaat acaaggtcaa cgtattcatg       420
     gaggatggcg caactacagt tcgagtacac gatatttcac cgcaaaccga aaattcatcg       480
     attgaaaagg aattggaaag atatggggac attgtttggt tgaaggagga gatgtggaca       540
     gagccagccg ttctgaaggg tattccgaat ggtgtaagat cggttcgtat ccgactgcat       600
     acagcgattc catcatacat caacatcaat ggagaagtca ccctcgtcac atacaaacac       660
     caacaacaaa cgtgcaggca ctgcggaaaa ccagttcatt gggggcggaa atgcatcgaa       720
     gctggctaca tggaaatgca attgaatgga ggtaatatca gtgataggct tagagcatca       780
     ggtgtcgatt atgcaggagt attgaaaact tctaatcaga cagggactag tcaggaaatt       840
     cgtaattctg ttagcagtga agcagagaag aatcgggtag acccgaacta caccaaccta       900
     acacaattat tcaacaagag ttcaagtcaa ggtcaagata gaaagaaaat aactactaac       960
     accgtagaat caaacgaaaa actagcgatc aagtctacta acactaacac taactcaaag      1020
     tttcaagcgc ccagcgaaaa cacagaaagc tcggctgcca aaactgccac atcgaaacta      1080
     gcacgtggtt caatggctgt gaacccaatc gcctctggta ttgaggtttc gaacaatttt      1140
     gatggtctcg atatctcgga tgatgatatg gatggtactc atgcaagtgg ttgcaagtca      1200
     ccttctagaa agaagattgg tctatcggtg gattcttctg aataatcata aaatggatat      1260
     gctctcgtat aatattggta ctctaaacat caacggaatt gcaaatgaaa acaaaataaa      1320
     tgctctgaga tcgtttatct atttgatgga tttggatatt ttgatgttgc aggaagtaca      1380
     cgagcacatt acgatcagcg gttttgacac tttttcgaat attgatttaa ataaacgcgg      1440
     cacagcaata ctagttaaat ctcatatcaa cacctcacat gtacagaaaa gtattgactc      1500
     cagagtaata agcttaaaga tcgagaatca cacaaccata tgtaatattt atgcaccttc      1560
     cggaacggct caaaaatctc tcagagagcg gttttttaca gacactattc actactacgt      1620
     taataatgga gacggaaggt taattgttgg aggtgatttc aattcggtaa tagataaaaa      1680
     agatgctaac cacggttcga attttagtca gtcgttgaag tttgttgtgc aatcattaaa      1740
     attaaatgat gtttggcaaa tagtacacaa aaatgcagtt gatttcactt ttatcagaag      1800
     cgggtcagga gcgaggcttg ataggattta tgtaagcgat gatttgaaag ggtacgtgag      1860
     caccgtgcgg acaaatgttt gtgcattctc cgatcataaa attgtaattt tgaagcttaa      1920
     gttgccaaat ttgggtagac catttggccg agggttgtgg cgtttgaacg atttggcttt      1980
     gacggatgaa aatctagctg agtttagaga aaagtggata tattgggtaa ggcagaagcg      2040
     atattacgat tcatggtttt cctggtggaa tgagtatgcg aaaattaaaa cagtgtcatt      2100
     tttcaaatgg aaatatagta cattgaaacg acgttatagc gataccatgg agttttttta      2160
     ttcggcgttg aacattttat acaacgatta tttgactaat ccagatgttt tgagtgaaat      2220
     caacaaagtt aaagcgaaga tgctggcgct gcaaaaagaa atgtcaaata acttttacgg      2280
     tcgttctgaa accttcatca gtggggaaaa ttcttcgatt tttcagttag gagaacaaaa      2340
     acaacgtaga gaaaaaactc atattaaaac tcttcgtatc aatggtcaag atgaagcgga      2400
     tattgagatt gtcactgaag aaatcaccac atttttcaaa aatttgtata ctaaaagtaa      2460
     tgtagttatc gaaaattcgt tcgagccgca aaagactata caagataatt ttccagcaaa      2520
     tagtaggtta atggatccca tttcagaaga agagttgttt caagctatta aaacgagcca      2580
     gtcaagaaaa tgtcctggaa aagatggatt aacaaaaaac ttttatatta aatgttggga      2640
     aatcatcaag acagagcttc tgttagtggt aaatgaagtg attaacggaa aaacatcaac      2700
     caaattttta gaaggagtaa tagtattgat cagaaagaaa aaaacaaaca atgacattag      2760
     cggatttaga ccaataacat tgttgaactt tgactacaag ttagtttcaa gaatcctcaa      2820
     aaacagatta gttaaactga atgaagcttt actatcaaat acacagaagt gttccaatgg      2880
     ttccagaact atctttgaag ccacttgtgg cataagaaat aaaattgtgg agataaattt      2940
     gaaaagaaaa aaggggttgc tcatttcttt cgatcttgaa aaggcgtttg atagggtaaa      3000
     tcacgagtat cttttagcga ctttatcaaa aatgggaata aataacagat ttgttgattt      3060
     tatgaggtta tgccagaata acacgtattc aaggattctt attaacggta atatgtctga      3120
     aacgattaga attgaaagat cagtacgaca gggagatcca ttggcaatga ttctgttttg      3180
     cttttatctt gagcctcttt tgcaaaagat ccagaatatt tgtgaagatg aaatggactt      3240
     actggtaggt tatgcagatg acataagtct gatcattttt gatgtgagga aactgagtgt      3300
     agtgaaacaa attttcgata attttgaatt agttgctggg gcgaaggtta attacaataa      3360
     aacgaaagca atgaggatag gatcaaataa taatttcatt ttacctgatt ggctggagca      3420
     cgaagagtat ttgaagattt tgggaatttg gttcaataat aatagcaatg cgatgattca      3480
     aaagaactgg gacgaaattt tacaaaattt gaggtatatg ctttggaata gtcaattcag      3540
     aaatttaaat ttaattcaaa aaatcatttt cctgaacact tatgcgtcat cgcgtatgtg      3600
     gtatacggca tcaacggttt cggtccataa gaaaactcta acaaaaataa aatcgctctt      3660
     tggaaatttt ttgtggtatc gttgttcttt aagaatttct ttcaatcaac tgtgtttgcc      3720
     aaggaaaaga ggaggtttag gtctcatttc accagaacat aagtgtaaat cgttgctaat      3780
     caacagattt cttcgactgc gtcaatcttc acctttctta cataattata ctgatcgaat      3840
     tgaaaatcct ccaaacatga aaggtttacc gtgcaatgca cattttctca aaactgttta      3900
     tttagaacta gcgtatattt ccgaaaacat aaaaaataat ccaacatctc aaagcattta      3960
     taatcatttc tgttctaact tacctaaacc acatataacg gagaaatatc cacaatttag      4020
     atgggacatt atttggaaga atgtattcag tagacagatt tcttcagacc atcaagtaac      4080
     atggtttctc ttaatcaatg agaaaatcat ttgtgctgaa aaacagtttc ggtttggcag      4140
     tcgagtatca ccaaactgtg tttattgtcc tcaagaaatt gaggatttga agcataggtt      4200
     ttctacatgc cccaaaatta gaaactgttg gtggtttact gtaacacaaa ttaaattgtt      4260
     aaacaggcgt aaatttagaa atattagttt tgatgatttt aaatttccag ttttgagaac      4320
     atacaatcag ttagaaagaa agatcgcatc gaaaatgttt ttagaatttt taaggtatgc      4380
     tattgcaaat gatagagaag atgtatctgt agaagaattg aaattcatta tgaattgcaa      4440
     tatataggtt aatatataaa tagaagaata cacgatcacg tgcttgtttt gtaaaacaga      4500
     aaattgtaat catgtaacaa atcacaaaat aatggaaata aacacgtttt aagtaaggaa      4560
     aaaaaaaaaa aaaa                                                        4574
//
ID   L1_Ele26    repbase;    DNA;    INV; 4708 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele26.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4708
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4708
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 14
CC   sequences with >96% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1346
FT                 /product="L1_Ele26_1p"
FT                 /translation="MASVRPRENTFKVDLTNFPKRPTFEDIHKFVYETLGL
FT                 TVDHVVRLQMNHAQNCVHIKCRDLQTAQDVVQMHNEKHEIEVNKTKVKVRL
FT                 VMDDGGVEVKIHDLSENIRNEEIVAFLKQYGDVITIKDQIWSENYPLKGIP
FT                 TGVRVVKMMLRRHIKSFVTIQGEQTLVTYRNQVHTCKHCTNPSHPGSTCVE
FT                 NKKLLGQKADLNDRLKLAAQSNNNPSTSFASVVNKSTATLMPHFVSLNELA
FT                 SSAPASVATNNTVSTCSLPSVSDQPEIPAATTDGNDMQMKTTGMEEQWIDS
FT                 AQQNIGEASTSGGITAGESAKQPSAGDQSTHQAATAVHDKATTSSVSVFKI
FT                 PSNPSNTPNLTMEISDSDSYESSQDNGSFQKVKRRGRPKKPKIDPXFRS"
FT   CDS           1458..4658
FT                 /product="L1_Ele26_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNNPSISYNIGSVNICAMSSVTKIQSMCSFFRLMDFD
FT                 IVLLQEVENSRLSIPGYTVITNVDERKRGTAVALKAHIPYCNVQRSLDGRI
FT                 ICVNVGNCVTVCNVYPPSGTQNTSSREHFFRQSLPFYLQQSTPNLILGGDF
FT                 NCVVSAKDATGSSNHSQSLKQLLDSLKLCDTWDCVHKNQIAYSFVRPNCAS
FT                 RIDRIYVSSSLVSSLRTSEYFVTPFSDHKAYKMRCCLPNLGKPQGRGFWSM
FT                 RTHVLTPENLEEFEIKWNRWLRERRNFDSWMSWWLNFVKPKIISFFKWKTN
FT                 LAFREFHVRNEYLYRRLREAYDNLYANPQGLTEVNSIKGKMLNLQSKFSKS
FT                 FERINETIIAGEKISAFQLGERIQKKNKSTIRSMTHANIRLENPTEIERHV
FT                 CQYFEALYTDENLSVNTEFPCNRFISPNCEFNIGAMNEITTQEIFFAIKSS
FT                 ASRKSPGCDGLPKEFFLKTFDIIHRQLNLVINEALRGNIQQKFVDGIIVLS
FT                 KKKGGDDSIKGYRPISLLNFDYKLLSRILKQRMDKIMTDNNLLNSNQKCSN
FT                 SKRNIFEAVCAIKDRIVEINCKRRSGRLISFDLDHAFDRVNVNFLLNVMRS
FT                 MRFHTDFVSLVGKIMSMSHSRILVNGNLSPEIPILRSVRQGDPISMHLFVL
FT                 YLHPLLEKLTTICNHPLELVVAYADDISIIVVEELKLDLIKKAFMDFGMCS
FT                 GAKLNLTKTTSIHIGAQQPTNRMVSWLKSEEAIKILGVVYFNSLKRTLDFN
FT                 WAEVIKKTSRLMWLFKQRVLSMHQKVALINTFITSRLWFMASVLSIPNSAV
FT                 AKITSRIGGFIWSRYPCRISMEQLSLPVEKGGLNLHLPMHKCKALLLNRFL
FT                 QCGEHTPFAASFLEQMANPPNVSGIPALYPCLKQISKELPYLPESTIRNPS
FT                 APAIHSIFRNMIKSPKIVEENPNIHWARVWKNIRRKTFTSEEKSTYYLVIN
FT                 EKIPHAALFFRQNRIDSPMCNRCPNAVEDLEHKLSTCVRVQHLWNHLRLKL
FT                 ETILNRRVTYKMLSLPELNNTEVNTRNKALKMFIVYVNFVLDVNSCFTIEA
FT                 LDFVLCCNCL"
XX
SQ   Sequence 4708 BP; 1472 A; 1026 C; 948 G; 1260 T; 2 other;
     cagttaggtt caagctctcg ctgcgaccag acgtctgaaa aacaagctcc gtttcgattt        60
     ttttcctttt cttttcgcgc acgcacttcg gtgtgtgaaa gagtatttgc gtcagttttt       120
     tgctggcgac cggtatcgtt ttttgctacg ttaagcaaac aaaatctacc atggcctctg       180
     tgcgaccgcg tgaaaacacg ttcaaagtcg atctaacgaa ctttccaaaa cgaccaacgt       240
     tcgaagacat tcacaagttc gtttacgaaa cacttggtct gactgtggat catgttgtgc       300
     gtctacaaat gaaccacgca caaaactgtg tgcatatcaa gtgtcgtgat ttgcaaactg       360
     ctcaggatgt agttcagatg cataacgaaa agcatgagat cgaagtgaac aagactaagg       420
     tgaaggtacg tctcgtcatg gatgacggcg gcgtcgaggt gaaaattcat gacctgtccg       480
     aaaacattcg gaatgaagaa atagtggcgt tcctgaagca gtacggtgat gtaatcacga       540
     ttaaagacca gatctggagt gaaaactatc ccctgaaagg gataccgaca ggtgtgcgcg       600
     tagtgaaaat gatgttgcgg cggcacataa aatcttttgt gaccattcaa ggggaacaga       660
     ccctggttac ttaccggaac caggtgcaca cgtgtaaaca ttgtactaac ccatcccacc       720
     cgggttccac gtgtgtggaa aacaagaaac tgttgggtca aaaagcagat cttaacgatc       780
     gcctcaagct cgcggcgcaa tcgaacaaca atccttcaac cagctttgca agtgtggtga       840
     acaaaagtac agcaacccta atgccacatt tcgtttcact gaacgaattg gcatcttcag       900
     ctccagccag cgtagcaacg aacaacacag tcagcacatg tagccttccc tctgtgtctg       960
     accaacccga gatccccgcc gccaccactg atgggaacga catgcagatg aaaacaactg      1020
     gaatggaaga acaatggatc gacagcgcac agcagaatat cggagaagca tctacatctg      1080
     gtggtattac ggcaggagaa tctgcaaaac aaccatcagc aggagatcaa tccacacacc      1140
     aggctgcaac cgcagtccat gataaagcca caacgagttc ggtgagcgtt ttcaaaattc      1200
     cctccaatcc ctccaacact cccaatctca ctatggagat ttccgacagt gacagttacg      1260
     aatcgtcaca agacaacggt tcgtttcaaa aagtcaaacg caggggacgc cccaaaaaac      1320
     caaaaatcga tcctwtgttt cgatcctaag cccattaaaa ttcaacatga tcctattact      1380
     aacatgttaa ccccgagtag gccgcggtgt atgtcggccc cccaaagcta actttgtata      1440
     cctgaaatgg atccaagatg aataatccat ctatcagtta taatatagga agtgtgaaca      1500
     tttgtgccat gtccagtgta accaaaattc agtctatgtg ctcgtttttt cgtttaatgg      1560
     attttgatat tgttctgcta caagaagtcg aaaattcacg cctatctata ccaggatata      1620
     ccgttattac aaacgttgac gaaaggaaaa gaggaactgc cgttgcccta aaagcccata      1680
     ttccatattg caatgtccag agaagcctag atgggcgtat tatatgtgtg aatgttggaa      1740
     attgtgtaac tgtttgtaat gtgtaccccc catcgggcac tcagaatacg tcgtctaggg      1800
     aacatttttt cagacaatct ctgccgtttt acctacaaca atctacacca aatcttatac      1860
     ttggcggtga tttcaattgc gttgtgtccg ccaaagatgc aactgggtct agcaatcaca      1920
     gtcagtctct gaaacaacta cttgattctc tgaagctatg tgatacgtgg gattgtgttc      1980
     ataaaaatca aatcgcatat agtttcgtcc gcccaaattg tgcttctcgc attgatagaa      2040
     tatatgtttc gtcgtctctt gtctcgtccc tgcgtacgtc cgaatatttc gttacacctt      2100
     tttctgacca taaggcgtac aaaatgagat gttgcctccc aaatctgggc aaaccacaag      2160
     gccgagggtt ctggtcgatg cgaacccatg tgttaactcc tgaaaacctc gaagaatttg      2220
     agataaagtg gaaccggtgg ttgagagaga ggcgaaattt cgacagttgg atgtcgtggt      2280
     ggctgaattt cgtcaaacct aaaatcatca gcttcttcaa gtggaagaca aatttagcgt      2340
     ttcgagaatt tcatgtaaga aatgaatatt tgtatcgtcg gctacgtgaa gcgtatgaca      2400
     atttgtatgc taatccacaa ggtcttacag aggttaatag catcaaaggc aaaatgctca      2460
     acctacaaag taaattttca aaatcgttcg aaaggataaa tgaaacaatc atcgccggag      2520
     aaaaaatttc tgcatttcag ttgggagaac gcattcaaaa gaaaaacaaa agcactatta      2580
     gatcaatgac gcacgcaaac atccgcttag aaaaccccac tgaaattgag agacatgtct      2640
     gtcagtactt tgaagcactc tacactgatg aaaatctatc tgtaaatacg gaatttccgt      2700
     gcaatagatt tatctctcct aactgtgaat tcaatattgg agccatgaat gaaataacga      2760
     ctcaggaaat cttctttgct atcaaatcaa gtgcttcccg taaatctcca ggatgtgacg      2820
     gacttcctaa agaattcttc ttgaagacct ttgacattat acaccgtcaa ctcaatcttg      2880
     ttataaatga ggctcttcgt ggaaatattc agcaaaaatt cgttgatgga ataattgtac      2940
     tcagcaagaa aaaaggtggt gatgattcaa tcaaagggta taggcccatt tctctgttaa      3000
     actttgatta taagttacta tcacgcatcc taaagcagag gatggataag atcatgacag      3060
     acaacaatct cctaaactcc aatcaaaagt gttcgaactc taaacgaaat atatttgagg      3120
     ccgtttgcgc catcaaggat cgaatcgtag aaatcaattg caaaagaaga tcgggaaggc      3180
     taatttcgtt tgatcttgat catgcctttg atcgtgtgaa tgtaaatttc ttgttgaatg      3240
     ttatgcgtag tatgcgtttc cacacggatt ttgtgtctct tgttggaaaa ataatgtcca      3300
     tgtcccattc gmgaatactt gtcaatggaa atctcagtcc cgaaatccca atcctgcgat      3360
     cagttcgcca aggtgatccc atcagcatgc acctcttcgt cctatacctt caccctctcc      3420
     ttgaaaaact cacaaccatc tgcaatcatc ctttagaact cgttgtggca tatgctgacg      3480
     acatatccat aattgttgtg gaagagttga aattggacct gattaaaaaa gcgttcatgg      3540
     acttcggtat gtgctcggga gcaaagctaa atctcactaa aacgacgtcg attcacatag      3600
     gagcacaaca acctacgaat cggatggtca gttggctcaa aagtgaagag gccatcaaaa      3660
     ttcttggagt tgtctacttc aactcactca agcgcaccct tgacttcaac tgggcagagg      3720
     tcataaagaa aacatctcgt ctaatgtggc tcttcaagca aagagtattg agtatgcatc      3780
     agaaagttgc actgataaat acgttcatca cctcgagact ctggttcatg gcgtcagtgc      3840
     ttagcattcc caactctgca gtagcaaaaa tcacatctcg catcggaggt ttcatctggt      3900
     cacgttatcc ttgccgaatt tcaatggaac agctttctct tccagtagag aaagggggat      3960
     taaacctgca tctcccgatg cacaaatgca aggctctgtt attgaaccgg tttcttcagt      4020
     gcggagaaca cactcctttt gcagcatcgt tcttggaaca aatggccaac cctccgaatg      4080
     tgtctgggat tccagcttta tatccttgtc tgaagcagat atctaaagag ttaccatatc      4140
     tccctgagag cacgattagg aatccatctg caccagcaat tcattccatc ttcagaaaca      4200
     tgattaaatc accaaaaata gtagaagaaa atccaaatat tcactgggca agagtttgga      4260
     aaaacattcg cagaaaaact tttacttcgg aggaaaagtc cacctactat ttggtcatca      4320
     acgagaaaat accacacgct gctctgttct tcagacaaaa taggattgac agtccaatgt      4380
     gcaaccggtg tccaaatgca gttgaagatc tggagcacaa actctcaaca tgtgttcgcg      4440
     tgcaacatct gtggaatcat cttcgtttaa aattagaaac aattttaaat agaagagtaa      4500
     cctacaaaat gttatcttta ccagaactga ataacactga agtgaatacc agaaacaagg      4560
     ctctaaaaat gtttattgtg tatgtaaact ttgttttaga tgtcaacagt tgttttacaa      4620
     tagaagcact tgactttgtt ttatgttgta attgtcttta aatgtagtat gaactaaata      4680
     aatgtgttta caaaaaaaaa aaaaaaaa                                         4708
//
ID   L1_Ele28    repbase;    DNA;    INV; 4770 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele28.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4770
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4770
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. There are 18 sequences with >96% identity
CC   to the consensus. The consensus is ~100% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1494
FT                 /product="L1_Ele28_1p"
FT                 /translation="MSSPKSRENTFRVDFSNLPKRMSYEETHNFVHNTLGL
FT                 SLDAVVRLQVNHALNCAQVKCRDLKTAQETVIKHNAKHDVEINSTKYKVKL
FT                 IMDDGGIEVKIHDLSENVTSEQICEFLKHYGDVIAVKELMWGDNFIYKGVS
FT                 TGVRVAKMVLRKHIKSYVVVQGEQTLISYSGQPATCKHCANLVHPGMTCVQ
FT                 NKKLITQKTDLTARLTRAREERSSYADIAGSSPILMPAQNNTGFRSAEALM
FT                 PEFVKLGGMRKDQEATNTAKENSKLSVHSNIEGEVAGASTSFSTAAAAAGV
FT                 EAAADAAEGDADVEEAVGGQLFSQSEELRTEIIIPMNVDLVEADHDTEVDS
FT                 STVSGNTENAETLSQPQILNVYSQKRVPILATDTTKVSKTSVHQSSEKHFK
FT                 VPAGICDGAMEVSESELEMRAHKEFEFSSDASCHDDGFVVKRSRHRSKKAR
FT                 TTH"
FT   CDS           1499..4690
FT                 /product="L1_Ele28_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSVLNTFKSYNIASININAISNENKVNSLRSMIRLLD
FT                 LDIVLLQEVENSRLSFPGFQVYSNVNETRRGTAIALKMHIPVSNVQRSLDS
FT                 RIISVKINNSVTICNVYAPSGVQNYHSREDMFNQFVPYYLQSASEYVVFGG
FT                 DFNCVTANKDATGVNNKSAALRTLIQNMNMRDTWDCLSREIEFSFIRSNCK
FT                 SRLDRIYVSANLVEQLRSASFHVNCFSDHKVYRIRLCLPDLGRAAGNGYWA
FT                 MRAHVLTEENVEVFENKWNYWCRQRRNYNSWIEWWIDYAKPRIKGFFKKKT
FT                 NDSFREFHAKNEFLYARSKTAYEELYQHPNKMSEVNRLKGKMLLLQREFSK
FT                 KFVRINDQCLEEESMSSYQLGDRIKKKSSSHITSIVDQQRQINGSAAVEEH
FT                 VYQYFRDLYSASETQEYQDATTTTKIPENSQENLRIMDEVTTEEIFRAIKS
FT                 SASKKSPGVDGLPKEFFVAAFNVIHRQLNLIVNEAMQGNIPQKFVEGVVVL
FT                 CKKKGGENSIKGYRPLTMLNYDYKLVSRILKSRVASVIDKNNLLTHSQKCS
FT                 NAKKNIFEALHAIKDRIAEIRHKKKRARVVSLDLDHAFDRVEHCFLFRVMR
FT                 DMGFHERLIELLRKIMQNSRSRVLVNGHLSPEFQIGRSVRQGDPISMYLFV
FT                 IYLHPLLEKLHMICNDPLELVVAYADDITVVIVDDSKLEQIKRTFHEFGQY
FT                 SGAVLSLSKTIALNIGDLSRPQSVVNWPSVSDSVKILGITFFNDHKVMIEF
FT                 NWKETIRKMTQLMWMFKPRLIVLHQKIRLLNVYVTSKLWFVASVLSIRNQD
FT                 VAKVTKHIGTFIWGRKPRVAMNQLIQPVSKGGLNLHLPMYKCKALLANRTL
FT                 QVREVIPFGNRLITEATNGNNPVFPDMYPCIKVVWRVVQDLPQQVMENICS
FT                 SAIERHLTQELPIPKIISENPAVRWPSVFQNIHSKHMSAIEKTTMYLFVNQ
FT                 KLPHAQLLYKIGQTTSPNCATCRLTVESQEHKLANCPKVARLWSYLCSKLR
FT                 LHLNTRIEYSIMKTPEFRDVSRNSRIAVLKLFVKYVVYILEGSIPLNVQEL
FT                 EHILNLN"
XX
SQ   Sequence 4770 BP; 1565 A; 895 C; 1073 G; 1237 T; 0 other;
     cagttcgcgt tgaaacgctg agatgatcgg acgtgcgcgt tataatctca agcattttca        60
     cgtggtcaaa taaagttagt gctctgaacc gtattctttt cgtcaggctg acgacacaaa       120
     atcaaaggca ttttcaatgc acaattaacg atgtcttcgc caaaatcgcg ggaaaacact       180
     ttccgggtgg atttttctaa tctgcccaaa cgaatgtcgt atgaagaaac gcacaatttt       240
     gtgcacaata cattgggtct cagcttggac gctgtagtac gactacaagt aaaccacgct       300
     ctcaactgtg ctcaagtgaa atgcagagat ctcaaaactg cacaagaaac tgtgattaaa       360
     cacaatgcga aacacgatgt agagatcaac agtacgaagt acaaagtgaa attgatcatg       420
     gatgatgggg gaattgaagt aaagatccac gatctttcag aaaatgtcac atccgagcaa       480
     atatgtgaat tcttgaaaca ctatggcgac gttattgcgg tcaaagagct catgtgggga       540
     gacaacttta tctacaaggg agtctctacc ggtgtacgtg tggctaaaat ggttcttcgt       600
     aaacacatta agtcgtacgt ggtagttcag ggagaacaaa cactaatctc ctattcaggg       660
     cagcctgcca cgtgtaagca ttgtgcaaat cttgtgcatc caggtatgac ctgtgtacaa       720
     aacaaaaaac ttattacaca gaagactgac cttactgcaa ggttgacacg ggctcgcgaa       780
     gagcgatcat cgtatgctga cattgctgga agttctccaa tcctgatgcc agcacagaac       840
     aacactggat tcagatctgc cgaagctctc atgcctgagt ttgtgaagct gggtggtatg       900
     aggaaagacc aggaagctac aaataccgcc aaagaaaatt ccaagctatc cgtacattcg       960
     aatatcgagg gtgaagttgc gggagcgtct acttcgttct ctactgctgc tgctgctgct      1020
     ggtgttgagg ctgctgctga tgctgctgag ggagatgctg atgttgagga ggctgtagga      1080
     ggtcaactct tttctcagtc cgaggagctc agaactgaga taataattcc aatgaacgtg      1140
     gatcttgttg aggcagacca tgacaccgaa gttgactcgt caactgtctc aggcaacact      1200
     gagaatgccg aaactctttc tcagccacaa atactgaacg tctactccca gaaaagagta      1260
     cctatactcg ctacagacac aaccaaggtt tccaaaacca gtgtgcacca gtcgtcggag      1320
     aagcacttca aagtcccggc aggaatctgc gatggtgcga tggaagtttc agagagcgaa      1380
     ttggagatga gagctcacaa agagtttgag ttctcatcgg atgcgtcgtg tcatgatgat      1440
     ggattcgtcg tgaaaagaag tagacaccgt tccaagaaag ccagaaccac acactaagat      1500
     gagtgttctc aacacattca aaagctacaa tattgctagc attaatatta atgccatatc      1560
     caatgaaaat aaggtaaatt cgctacgatc aatgatacga ctattggatt tagacatagt      1620
     tttattacaa gaagtggaga acagtcgctt aagcttccct ggcttccaag tgtacagcaa      1680
     cgtaaacgaa acgcggcgag gaacagctat agcactaaag atgcacatac ctgtatctaa      1740
     tgtgcaacga agccttgata gcagaataat aagtgtgaaa atcaataact ctgttactat      1800
     ctgcaatgtt tatgcaccaa gtggtgtaca aaattatcat agcagagaag atatgttcaa      1860
     ccagtttgtt ccgtattact tacaaagtgc atcggagtat gttgtgtttg gaggtgactt      1920
     taattgtgta actgcaaata aggatgcaac aggagtaaac aataagagtg cagcgttgcg      1980
     tacgctaatt cagaacatga acatgcgaga tacatgggat tgtttgagtc gagagatcga      2040
     attcagtttc ataagatcga actgtaagtc acgattagac agaatttatg tgtctgcaaa      2100
     tctagtcgag caattgagga gtgcttcttt ccatgtaaac tgcttttcag atcacaaagt      2160
     gtatagaata agactgtgct taccagacct gggtagagct gctgggaatg gttattgggc      2220
     tatgcgtgcg catgtgttga ctgaagaaaa cgtcgaagtg tttgaaaaca agtggaatta      2280
     ctggtgtcgt caaagaagaa actataacag ttggattgag tggtggatag attatgcaaa      2340
     accaagaatc aaggggtttt tcaagaagaa aaccaatgac tccttcagag aatttcatgc      2400
     caaaaatgaa ttcttatacg cacgttcgaa aactgcttac gaagaattat atcaacatcc      2460
     gaacaaaatg agtgaagtga accggttgaa aggcaaaatg ctacttctgc aacgagagtt      2520
     ttcgaagaaa tttgtgcgta ttaatgatca gtgccttgaa gaagaaagta tgtcgtccta      2580
     ccagttggga gacagaatca agaaaaaatc aagttcgcac ataacatcca tcgtagatca      2640
     acagcgacaa attaatgggt cagctgcagt tgaagaacat gtatatcagt actttcggga      2700
     tttgtattct gcaagtgaaa cgcaagaata tcaagatgca actacaacaa ccaaaattcc      2760
     tgagaattct caagaaaacc taagaatcat ggacgaggtg acaactgagg agatttttag      2820
     agcaataaaa tccagtgctt ctaaaaagtc tcctggagtg gacggattgc ccaaagagtt      2880
     cttcgtagct gcgttcaacg ttattcaccg tcaattaaac ctgattgtga atgaagcaat      2940
     gcaaggaaac attccacaga agtttgttga aggtgtcgtc gtgctgtgta aaaagaaagg      3000
     tggtgaaaac agcattaaag gatatcgtcc actcacgatg ctgaactatg attataaatt      3060
     agtcagccgt attctcaaaa gtcgagttgc aagtgtaatc gataaaaaca acctactaac      3120
     acattcgcaa aagtgttcta acgctaagaa aaacattttt gaagctctac atgcgattaa      3180
     ggatcgtatt gcagagatac gtcataaaaa gaagagagca agagttgtat cactggatct      3240
     cgaccatgcg ttcgacagag tcgaacattg tttcttgttt cgtgtaatga gagatatggg      3300
     tttccacgaa agactaatag agcttctccg aaagatcatg cagaactccc gctcacgtgt      3360
     tctagtaaat ggtcatctct ctcctgagtt ccaaattggt cgttcagtga gacaaggaga      3420
     ccctataagc atgtatctgt ttgtgatata cttacatccg ttgctcgaaa aattacacat      3480
     gatctgtaat gatccgcttg agttagtggt ggcctacgcc gacgatatta cggtagtgat      3540
     agtggatgat tcaaaacttg aacagatcaa acgaactttc cacgaatttg gacagtactc      3600
     gggagcagta ttgagtctct cgaaaacgat tgcacttaac atcggagatt tatcacgacc      3660
     tcagtcagtt gtgaactggc cgtctgtgag tgatagtgtt aaaattctgg ggatcacttt      3720
     tttcaacgat cacaaagtta tgattgagtt caactggaag gaaactatac gtaaaatgac      3780
     gcagttaatg tggatgttca agccgcgact catagtgtta caccagaaga taaggctgct      3840
     gaatgtgtat gtaacgtcca agttatggtt tgtggcttca gtgctcagta taaggaatca      3900
     ggatgtggcg aaagtaacga agcacatcgg gacctttatt tgggggcgaa aaccgagagt      3960
     agcgatgaat caactaatcc aacccgtttc aaaaggaggg ttgaatctac atctacctat      4020
     gtacaagtgc aaggctcttc tggcgaatcg aacgttgcaa gtaagagaag tgataccgtt      4080
     cggaaataga ttgattactg aagcaacaaa cggaaataac cctgtgttcc cagatatgta      4140
     tccgtgcata aaagtggtgt ggagagtggt ccaagatctt ccacagcaag tgatggaaaa      4200
     tatctgcagc agcgcgattg agagacatct tacacaagag ttaccaatcc ctaagattat      4260
     ttcagaaaac ccagcagtta gatggccctc agtgttccaa aatattcata gtaaacatat      4320
     gtcagcaata gaaaaaacta cgatgtactt atttgttaat caaaaacttc ctcatgcaca      4380
     actactgtat aaaattggtc aaaccaccag tcctaattgc gctacatgta gattaacagt      4440
     agagagccaa gaacataaat tggcaaattg tcccaaagtt gctagattgt ggagctatct      4500
     gtgctcaaaa ttgagattgc atttgaacac aagaatagaa tattcaataa tgaaaacacc      4560
     agaatttagg gatgtaagca gaaacagcag aattgcagtt ctaaaattat tcgttaaata      4620
     cgtagtttat attttagaag gctcaatccc tctgaatgtg caagagctgg aacatatttt      4680
     aaatcttaac tagtgttgag aataggcggt gcgctttgta atgtgtatgt gaacgtaaac      4740
     agtgaataaa tgtgtttaaa aaaaaaaaaa                                       4770
//
ID   L1_Ele3     repbase;    DNA;    INV; 4465 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4465
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4465
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >92% identity, and ~94% identical to the original
CC   sequence in [1]. It is close to IseAg1 in Anopheles gambiae.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..1198
FT                 /product="L1_Ele3_1p"
FT                 /translation="RTHEVEIDGKKHKLRITIEDGSVEVKVHDLPEDVTKE
FT                 KIVEFLRAFGEVVSIHELTWGESYEFAGVPLGIWSARMLLHRNIDSWVTID
FT                 GQQAYVVYKGQVISCKHCKEQAHSGISCVQNKKLLVQKSYANVAKQSGNRP
FT                 PPKKSSGVKPPSTKPVGPTAPSLTSSAAFPELPKPPSRTEQSAPVTKANSQ
FT                 SDKIDLTASPSPQQQRAHGSSSSHRSTQQATEATQPNVAVVDLFKKPIHAL
FT                 RSHSKNGNGNETDESSASTSSRRSRGRPPGKKPRREDDDDEQDEDSQP"
FT   CDS           1201..4038
FT                 /product="L1_Ele3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MALTSYNIASINIGTITNPTKLAALRTFINSQSLDIV
FT                 CLQEVENDQLSLPGFVVYTNVDHTRRGTAVALKEHIQVSHVEKSLDSRLIA
FT                 LRVHDTTICNLYAPSGSAQRAAREDFFNGTLAYYLRHPTQHVILAGDFNCV
FT                 LRACDSSSPNTSPALKTAVQQLQLHDVWEKLRPRDAGFTYVCRNAQSRLDR
FT                 IYVSSGLREHLRTAHTHVCSFTDHKALTLRLCLPQLGHEPGRGFWSLRPHL
FT                 LTDENVAEFQTQWQYWTRQRRNYGSWIEWWISYAKPRIKTFFKRKSRIVFD
FT                 EFHDAHQRLYAELRLAYDGYYQHPEMLPTINRLKGEMLALQRNFSHMFMRM
FT                 NETHVAGEPVSIFQLGERRRRRTVITQLRTEENETVAEPAAIEANLLNFFS
FT                 RLYTEEATAENNNDDGFTCERVIPPDDPLNQACTDEITTAEILSAIRXSAP
FT                 RRSPGNDGIPREFYLRXFDVIHRELNLLLNEALAGNLPPAFVEGIIVLVKK
FT                 KGGDNTARSYRPISLLNSDYKLLSRILKSRLECVMRAHHVLSDGQKCSNSE
FT                 RNIFQATLALKDRIASLRHHRRAGKLISFDLENAFDRVRHSFLFGTMCSLG
FT                 FSRDLVALLARIASRSTSRLLINGRLSRPFEIQRSVRQGDPLSMHLFVLYL
FT                 HPLVCRLEQACGNDLLVAYADDISVIVTSAGQIELMNGIFIRFEAVAGARL
FT                 NLRKTVAIDVGFCEGNPINTQWLQTADVVKILGITFANSIRLMTTLNWNAL
FT                 VGKFAQQMWLHSLRMLTLHQKVIMLNTFGTSKLWYVSSVLPPLGVHTAKIT
FT                 STMGAFLWRGMPARVPMMQLARSKEHGGLNLHLPALKAKSLAINRHLKEID
FT                 SLPYYKSLLFHDNPRPAISIDHPDLKIILSNYSHIPPLIQENPSADLIHRH
FT                 FVSQTDLPKVERSHPTIDWPRAWRNISDKQLSSAERRSSTCW"
XX
SQ   Sequence 4465 BP; 1105 A; 1259 C; 1161 G; 929 T; 11 other;
     cagttatcgc tcagcttctg agacgcawag acgtgtttac gactgcgctc ctcattagtc        60
     aggcatattt tttctgatcg cttttcgatt gtttcgttgt gccgcgtcgc gtgtgtggtg       120
     attacgcgat gaggcgagaa aacaccttcc ggatcgacta ctcgagcttc cccgtgaagc       180
     cggctttcga gaaggtgcac ggcttttgcc gtacagttct cggcctgaas aaggamgatg       240
     tgawaagact mcagtgcagt agaggtgaac aatgtgcatt cgtcaaggtc ggcgacctgg       300
     cgctcgcaca gaaaatagtg gaagaacatg acggacgcac gaagtggaga tagatgggaa       360
     gaagcacaag cttcgcataa ccatcgagga tggaagtgtc gaagtgaagg tgcatgacct       420
     ccccgaagac gtgacgaaag agaagatcgt ggagttcctg cgcgcgttcg gtgaagtggt       480
     ctcgattcac gagctaacgt ggggagagag ctacgagttc gccggcgtac cactcggcat       540
     atggtcggcm cgaatgctac tgcaccgaaa catcgactcg tgggtcacca tcgatgggca       600
     gcaggcgtac gtggtgtaca aggggcaggt gatctcgtgc aagcactgca aagagcaggc       660
     acactctggc atatcatgtg tccagaacaa aaaacttctg gtgcagaaga gctacgccaa       720
     cgtagcaaag cagagtggca accgtccgcc accgaaaaaa tcgtccggtg tgaaaccacc       780
     gagcacgaaa ccggtaggtc ctaccgcgcc atcactcacc tcgtcggctg cttttcccga       840
     gctgccgaag cctccgagtc ggaccgaaca gtctgccccg gtgacgaaag caaacagtca       900
     atccgacaag attgacttaa cggcgtcccc cagcccgcaa cagcaacgcg cgcacggttc       960
     gtcgtcgtct caccgatcga ctcaacaagc caccgaagct acccaaccca atgttgctgt      1020
     ggtggacttg ttcaaaaagc cgatccatgc gctgcgatcg cacagcaaga atggcaacgg      1080
     caacgaaacc gatgaatcgt cggcatccac gagcagcagg cgaagcagag gccgaccacc      1140
     cggcaaaaag ccccgccgag aagacgatga cgacgagcag gatgaggatt cccaaccgta      1200
     atggctctca catcctacaa tatcgcgtcc atcaacatcg gcaccatcac caaccccacg      1260
     aaactagcag cgctgcgcac cttcatcaac agccaaagtc tcgatattgt gtgtctgcaa      1320
     gaagtggaaa acgaccagct ctccttgcct ggcttcgtcg tatacacgaa tgtagaccac      1380
     acgagaagag gaacagctgt tgctctgaag gagcacattc aggtatctca cgtcgagaaa      1440
     agcctggaca gccgcctaat cgctctgcga gtgcatgata ccacgatctg taacctctac      1500
     gctccctccg gctctgcaca gcgcgcagca cgggaggatt tcttcaacgg cactctcgcc      1560
     tactatctcc gccatcccac tcagcacgtc atcctcgctg gcgattttaa ttgcgtgctt      1620
     cgagcatgcg attcgtccag ccccaatacc agccctgcac tcaaaaccgc tgtgcagcag      1680
     ctgcagctcc acgatgtgtg ggaaaagttg cgcccccggg atgccggttt tacgtacgtt      1740
     tgccggaacg cacaatcgcg cctcgaccgc atttatgtga gcagcggttt gcgggagcac      1800
     ttgcgtaccg cgcatacgca tgtctgctcg ttcacggacc acaaagcgct gacactccgt      1860
     ctttgcctcc cccagctagg acatgagccc ggccgtggtt tctggtccct tcgaccgcat      1920
     cttctcaccg acgagaacgt tgccgagttc caaacacagt ggcaatattg gactcggcag      1980
     cgcagaaact acggctcgtg gatcgagtgg tggatttcgt acgctaagcc aagaataaaa      2040
     acgtttttca agcgtaaatc gcggatcgtc tttgacgaat tccacgacgc gcaccagcgt      2100
     ctatacgcgg agctgcggct agcgtacgac gggtactacc agcatcccga aatgttaccc      2160
     accatcaacc gattgaaagg cgaaatgttg gcgcttcagc gcaacttttc gcacatgttt      2220
     atgcgaatga acgagacgca cgtggcggga gaacccgtct cgatatttca gttgggggag      2280
     agacgaagga gaaggaccgt catcacccag ttgcgaacgg aggagaatga gaccgttgcc      2340
     gagccagcag cgatcgaagc gaatctgcta aacttcttct cgcgtctcta cacggaggaa      2400
     gcaacagcag aaaacaacaa cgatgacggg tttacatgcg agcgtgtgat cccacccgat      2460
     gatcccctca atcaagcctg cacggacgag atcaccacag cagaaatcct ctctgccatc      2520
     cgakcgagtg ccccacggcg ttcccccggc aatgacggca tcccamggga attctatctg      2580
     cgcmtgttcg acgtgatcca tcgggagctc aatctcctgc tcaacgaagc actagcaggc      2640
     aaccttcccc ctgcttttgt ggagggcatc atcgtgctgg tgaagaagaa gggaggcgac      2700
     aacacggccc ggtcgtatcg acccatctcg ctgctcaaca gcgactacaa gcttctctcg      2760
     cgcattctga aatccaggct ggagtgcgtc atgcgagccc accacgtgct gagcgacggg      2820
     cagaaatgct ccaactcgga gcgtaacatt tttcaggcca ctcttgctct gaaagatcgg      2880
     attgcgagtc tccgtcacca ccggcgcgcc ggcaagctaa ttagctttga tttggagaac      2940
     gcattcgatc gggtccggca ctcattcctg ttcggcacca tgtgctcgct cggctttagt      3000
     cgggatctcg tcgctcttct cgcgcgcatt gccagtcgat ccacctctcg gctgctcatc      3060
     aacgggcgtc tctcacgtcc gttcgagatt caacgttcgg tccggcaggg tgacccgttg      3120
     tccatgcatc tcttcgttct ctacctccac cccctggtgt gtaggctcga acaagcatgt      3180
     ggcaacgatt tgctggttgc gtatgccgac gatatcagcg tcatcgtgac gtcagccggg      3240
     cagatcgagc tgatgaatgg gatattcatt cgcttcgagg ctgttgccgg cgcgcggttg      3300
     aatctgcgca aaacagtggc gatcgatgtc gggttttgcg aaggtaatcc aattaacacc      3360
     caatggctac agacagccga tgtagtcaaa attttgggta ttaccttcgc aaactcgata      3420
     cggttgatga ccacgctaaa ctggaatgcg ctggtgggga agtttgcgca acaaatgtgg      3480
     ctgcactcgc tgcgcatgct gaccctgcac cagaaagtca tcatgctgaa cacgttcggc      3540
     accagcaagc tgtggtacgt ttcgtcggtg ttgccaccgc taggagtgca cacggcgaaa      3600
     atcacctcaa cgatgggcgc gttcctgtgg agaggaatgc ccgcccgcgt cccgatgatg      3660
     cagctggcgc gcagcaagga gcatggggga ttaaaccttc atctgccggc gttgaaggcg      3720
     aaatcactcg ccatcaaccg tcatctcaag gagatcgatt cccttcccta ttataaatcc      3780
     cttcttttcc acgataatcc ccgcccagca atctcaatag atcatcccga cctaaaaata      3840
     atcctatcaa actactccca cattccaccc cttatccaag aaaacccctc cgccgatctc      3900
     atccaccggc atttcgtttc gcaaacggac ctgcccaagg tggaacgaag tcatccgacg      3960
     atcgactggc cacgtgcgtg gcgaaacatc agcgacaagc agctctcttc ggcggagcgt      4020
     cgaagctcta cctgctggtg aacgagaagt gggagcaccg aaaactgctg tccgtgatgc      4080
     ggagagcaga caacgagttt tgcacgcact gcgacggacg aacggttaga aacgctccac      4140
     cataaatttt gcgactgtgc tcgtgtcggc ccggcttgga cggtcctaca gcagaggctg      4200
     gcagtcgtga tgaatggatg gaggmgactg acgttcgaag acctggtgag acctgcsttc      4260
     gcaggcgtaa atagaggtag acgagtcgag attctgaaaa tgttagttaa atacatcacc      4320
     tttgttaacg agtgtaacgg tagaatcgat gttagagcac taaattttca tcttgatctg      4380
     taatttttag atgtaaataa ctgttttgta aatcgctgaa ctgactaaat aaaaccgaat      4440
     tttacaaaaa aaaaaaaaaa aaaaa                                            4465
//
ID   L1_Ele3B_AAe repbase;    DNA;    INV; 4345 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele3B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4345
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1400-1400 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
CC   The consensus is ~79% identical to L1_Ele3.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..1094
FT                 /product="L1_Ele3B_AAe_1p"
FT                 /translation="MRRENTFRIDYSCFPVKPSFEKVHGFCRSVLGLKKED
FT                 VERLQCHKGEQCAFVKVSDLALAQKIVDEHDAHHEVDLNGKKHKLRITMED
FT                 GSVEVKIHDLPENVSEEKIVDFLCGFGEVISIRELTWGEGYEFAGIPLGIW
FT                 SARMLIQKNIDSWVTIDGQQAYIVYKGQLQSCKHCKEQAHIGISCVQNKKL
FT                 LVQKSYANVAKQVVSARPPPKKSTGAKPPRQKPTGPNHPVPPSVTSDAFPE
FT                 LPKPSSQPEQPASTSRIDLTTSPRPQTQRAHGSTSSLRTPQIEESPKASIV
FT                 LVDCFKKPTSAMRSQSKSGNGNETDDSSTSTNSRRSARGRPPGKKPRREDG
FT                 DDEQDEDYHP"
FT   CDS           1098..4277
FT                 /product="L1_Ele3B_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MALSSYNISSINIGTITNPTKLNALRNFISSQSLDIV
FT                 CLQEVENDQLSLPGFVVYTNVDHTRRGTAVAVKEHIKVSHVEKSLDSRLLA
FT                 LRVQDTTICNIYAPSGSAQRAAREEFFNGTLAYYLRHQTPHVILAGDFNCV
FT                 LRACDSTSPNTSPALKTAVQQLQLHDVWEKLRPRDPGFTYVCRNAQSRLDR
FT                 IYVSNGLRENLRTAHTHVCSFTDHKALTVRLCLPQLGHEPGRGFWSLRPHL
FT                 LTDENVAEFQYKWQYWTRQRRNYNSWIDWWLTYVKPKIKSFFKWKSRIVFD
FT                 EFHDQHQRLYAELRLAYDGYYQHPEMLPTINRLKGEMLALQRNFSHMFMRI
FT                 NETYVAGEPMSIFQLGERRRRKTVITQLRTGENEIVDEPQAIEANLLNFFS
FT                 SLYSEEVANNNEVGFACERVIPLNDPVNEACTSEITTAEILSAIRASAPRK
FT                 SPGCDGIPREFYLRMFDVIHRELNLLLNEALAGNLPPAFVEGIIVLVKKKG
FT                 SDNTARSYRPISLLNSDYKLLSRILKNRLESVMKAHGVLSDGQKCSNSERN
FT                 IFQATLALKDRIASLRHHRRAGKLISFDLENAFDRVRHSFLFETMRLLGFN
FT                 QELIALLSRIASRSSSRLLINGHLSRPFEIQRSVRQGDPLSMHLFVLYLHP
FT                 LVCRLEQVCGDDLLVAYADDISVIVTSTAQIEAMNELFTRFELVAGAKLNL
FT                 RKTVAINVGFCEGNEIDAHWLQTANTVKILGVVFANSIRLMTTLNWTAMMG
FT                 KFSQQMWLQSLRTLTLQQKVIMLNTFGTSKLWYLSSVLPPLGVHTAKITST
FT                 MGAFLWRGIVARVPIMQLARSKEHGGLNLHLPALKAKSLAINRHHQEIDSL
FT                 PYYRSFLLHAHPRPAIPIDHPDIKIILSNYSQIPHLIQQNPSADLIHRHFI
FT                 QQTELPKVERNNPACNWPRVWRNIADKKLTSTQRTHLYLLVNGKTEHRKPL
FT                 FAMQRVADENCTYCGNQTTETLQHKFSTCARVGPAWTSLQQRLAGLINGWR
FT                 RLTFEDLARPALAGLGRPTRVKILRSFINYICFVNSCNDRIDVNALNFHLD
FT                 LEF"
XX
SQ   Sequence 4345 BP; 1186 A; 1166 C; 1031 G; 962 T; 0 other;
     atttcttttt gtgccgcgtc gcgtgtgtgg tcgcgatgag gcgagaaaac acttttcgaa        60
     tagactattc gtgcttccca gtgaagccgt ctttcgaaaa agtgcacggc ttctgccgtt       120
     cagtgctcgg gctgaagaaa gaagacgtcg aaagactaca gtgccacaag ggtgaacaat       180
     gtgcgttcgt caaggtcagt gacctggcgc tcgcacaaaa aatcgtagac gaacatgatg       240
     cccaccatga agtggatctg aacgggaaga aacacaaact tcgtatcacc atggaagatg       300
     gtagtgtaga ggtgaagatt cacgacttgc ccgaaaatgt gtccgaagag aagatcgtcg       360
     atttcttgtg cgggttcggc gaagtgatct ctattcgaga gttaacgtgg ggagagggct       420
     acgagtttgc cggtatacca ctcggcatat ggtcggcccg tatgttaata caaaaaaaca       480
     ttgactcgtg ggtcaccatc gacgggcagc aggcatatat tgtctacaaa gggcagctgc       540
     agtcttgcaa acactgcaaa gaacaggcac acattggcat ttcttgtgtc caaaacaaga       600
     aattgctggt gcaaaagagc tacgcaaacg tagcgaagca agttgtatcg gcacgaccac       660
     caccgaaaaa gtcaactggc gcgaagccgc caagacaaaa gccgaccggg ccgaatcatc       720
     ccgttccccc atcagtaacg tcggatgcct tccccgagct cccaaaacct tcgagccagc       780
     ccgaacagcc tgcctcgaca tctaggatcg atttgacgac gtccccccgc ccgcaaaccc       840
     aacgcgcgca tggttcgacg tcatcgctcc gaacaccaca aatcgaagag tcaccaaaag       900
     ccagcattgt tttggttgac tgcttcaaaa agccgacgag tgcgatgcga tcgcagagca       960
     agagcggcaa tggcaacgaa accgacgatt cttccacttc cacgaacagc agacgaagcg      1020
     cgcgaggtcg accacccggc aaaaagcccc gtcgggaaga tggtgacgac gagcaggatg      1080
     aggactatca cccataaatg gctctctctt cctataatat ctcgtccatc aacatcggca      1140
     cgatcaccaa ccccacgaaa ctaaacgcgc tacgtaactt catcagcagc cagagtctcg      1200
     atattgtgtg tctgcaagag gtggaaaacg accagctctc cttgcctggc ttcgtcgttt      1260
     acaccaatgt agaccatacg agaagaggta cggccgttgc ggtgaaggaa cacattaaag      1320
     tctctcacgt cgagaagagt ttggatagtc gactgcttgc gctgcgagtg caagacacaa      1380
     ccatctgcaa tatttacgct ccctccggct ctgcgcaacg ggctgctcgg gaggagttct      1440
     ttaatggaac tctcgcctat tatctccgtc accaaacccc acacgtaatt ctcgctggcg      1500
     acttcaattg cgtattgcgc gcatgcgact cgactagccc caatacaagc cctgctctaa      1560
     agacagccgt gcaacagcta cagctgcatg atgtgtggga aaaactgcgc ccacgagacc      1620
     ctggcttcac ctacgtctgc cggaacgcgc aatcgcgact cgaccgcatt tacgtcagta      1680
     atgggttgcg agaaaatctg cgaactgcgc acactcacgt gtgttcgttc acggaccaca      1740
     aagcgctaac cgttcgacta tgccttcccc agctcggaca tgagcctggg cgtggattct      1800
     ggtctctgcg gcctcacctt ctgaccgacg aaaacgttgc ggagttccag tataagtggc      1860
     aatattggac ccggcagcgt aggaactaca actcatggat cgattggtgg ctcacgtacg      1920
     ttaaaccgaa aattaaaagc tttttcaagt ggaaatctcg aatcgttttc gacgaattcc      1980
     acgatcagca tcagcgttta tacgctgagc tacggctggc gtacgatggg tattaccaac      2040
     atccagaaat gctacccaca attaaccggc tcaaggggga aatgttggct ctgcaaagaa      2100
     acttttccca catgttcatg cgcatcaatg agacctacgt ggcgggtgaa ccgatgtcca      2160
     tctttcagtt gggggagagg cgacgtagga agaccgtcat cacacagctg cgaacgggag      2220
     aaaacgaaat cgtcgacgaa ccacaagcga tcgaggcaaa tttgctaaat ttcttctcta      2280
     gcctctactc ggaagaagta gcaaacaaca acgaggttgg gtttgcctgt gaacgtgtca      2340
     tcccactgaa cgacccagtg aacgaagcat gcacaagcga gattaccacg gcagagattt      2400
     tgtctgcaat tagagcgagc gcaccgagga aatccccggg ttgcgatggc atcccacgag      2460
     aattttatct ccgcatgttc gacgtcatcc accgagagtt gaaccttttg ctcaacgaag      2520
     cactcgccgg caatctcccg cccgcgtttg tggagggcat tatcgtcctc gtgaaaaaga      2580
     aaggaagcga caacacggcc cgatcatacc ggcctatctc gctgctcaac agcgactaca      2640
     agctgctatc acgcattctc aaaaacaggc tcgagagtgt gatgaaagca catggcgttt      2700
     tgagcgacgg acagaaatgc tcgaactcgg agcgtaatat ctttcaagcc actctcgctc      2760
     ttaaagatcg aatagcaagc ctacgtcacc accggcgcgc cggtaagctc atcagcttcg      2820
     atcttgagaa cgctttcgat cgggtccgtc actcttttct cttcgaaacc atgcgcttgc      2880
     tcgggtttaa ccaggaactc atcgctctgc tctctcgtat cgccagccgg tcatcctctc      2940
     ggctgctcat caatgggcat ctctctcgcc cgtttgagat acaacgttcg gtccggcaag      3000
     gggacccctt gtcaatgcac ctcttcgtgc tgtacctcca tccactggtg tgtaggctcg      3060
     agcaagtgtg tggcgacgat ctcctggtgg cgtatgcgga cgacatcagc gtcatcgtaa      3120
     catcgacggc gcaaatcgaa gcgatgaatg aattattcac tcgtttcgaa ttagtcgccg      3180
     gggcaaaatt aaacctacgg aaaacggttg ccataaatgt tgggttttgc gaaggcaacg      3240
     aaattgatgc ccattggctg caaacagcca acactgtgaa aattttgggt gttgttttcg      3300
     caaactcaat acgtctaatg acaaccctta actggaccgc gatgatggga aaattttcgc      3360
     agcaaatgtg gctgcaatcc ttgcgcacgc tcacgttaca gcagaaggtc atcatgctga      3420
     acacctttgg tacctcaaag ctgtggtacc tttcgtcggt gctaccacca ttaggagtgc      3480
     acacggcgaa aattacctcc acgatgggtg cgttcctgtg gagaggaata gtcgcccgcg      3540
     tcccgatcat gcagctagct cgcagcaaag agcacggtgg actgaatctg catttgccag      3600
     ccttgaaggc gaaatctctc gccatcaaca gacaccatca agagatcgat tcccttcctt      3660
     actacagatc ctttcttctc cacgctcatc cccgcccagc aattcccata gaccatcccg      3720
     acattaaaat aatcctttca aattattccc aaattccaca cctcattcaa caaaacccct      3780
     ccgccgatct catccatcgg catttcattc agcaaacaga attgcccaag gtggaacgca      3840
     acaatccagc atgcaactgg ccacgcgtgt ggcgaaatat agcagacaag aagctaacat      3900
     caacgcagcg cactcatctc tatctgctag taaatggcaa aactgaacat cgcaaaccgt      3960
     tattcgcgat gcagcgagtg gcagacgaaa attgcacgta ttgtgggaac cagacgactg      4020
     aaactctcca acacaaattc agtacctgtg ctcgtgtcgg cccggcatgg acgagtctgc      4080
     agcagaggct tgcgggactg ataaatggat ggagacgact cacttttgaa gacctggcga      4140
     gacctgctct ggcaggatta ggacgtccaa cgagagtgaa aatattgcgc tcatttatta      4200
     attacatctg ctttgttaat tcatgtaacg atagaattga tgttaacgct ttgaattttc      4260
     acttagattt agaattttaa aactgtattc ccaatgaatt gaccacaata aaacctattt      4320
     ttaaaccaaa aaaaaaaaaa aaaaa                                            4345
//
ID   L1_Ele3C_AAe repbase;    DNA;    INV; 4450 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele3C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4450
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1401-1401 (2011).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. The consensus is ~78% identical to
CC   L1_Ele3 and ~84% identical to L1_Ele3B_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..1198
FT                 /product="L1_Ele3C_AAe_1p"
FT                 /translation="MVAMRRENTFRIDYSCFPVKPSFEKVHGFCRSVLGLK
FT                 KEDVERLQCHKGEQCAFVKVSDLTLAQKIVDEHDARHEVELNGKKHKLRIT
FT                 MEDGSVEVKIHDLPENVPEEKIVEFLCAFGEVIXIRELTWGEGYEFAGIPL
FT                 GIWSARMLVQKNIDSWVTIDGQQAXIVYKGQLQSCKYCKEQAHTGISCVQN
FT                 KKLLVQKSYAXVTKQTGSTRPPPKKTAGTKPXSAKXIGPKPPVLPTATSDA
FT                 FPELPKSSSQPEQPASTSKSDARFDLTTSPRPQTQRXHGSSSSLRAPHVEE
FT                 SPKANIVLVDCFKKPTNAMRSQSKSGNGNETDDSSTSTNSRRSARGRPPGK
FT                 KPRREDGDDEQDEDYHP"
FT   CDS           1202..4378
FT                 /product="L1_Ele3C_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MALSSYNISSINIGTITNPTKLNALRNFISSQSLDIV
FT                 CLQEVENDQLSLPGFVVYTNVDHARRGTAVAVKEHIQVSHVEKSLDSRLLA
FT                 LRVQDTTICNIYAPSGSAQRAAREEFFNGTLAYYLRHRTAHVILAGDFNCV
FT                 LRACDSTSPNASPALKTAVQQLQLHDVWEKLRPRDXGFTYVCRNAQSRLDR
FT                 VYVSNGLRENLRTAHTHVCSFTDHKALTVRXCLPQLGHEPGRGFWSLRPHL
FT                 LTDENVAEFQYKWQYWTRQRRNYASWIEWWXTYAKPKIKSFFRWKSREFFD
FT                 EFHNQHQRLYAELQLAYDGYYQHPEMLPTINRLKGEMLALQRNFSHMFMRI
FT                 NETYVAGEPLSIFQLGERRRKKTIITELXRGENXIINEPQAIXANLXDFFS
FT                 QLYSEEAPNSNXNGFAXERAIPPNDPVNEACMEEITTAEILSAIKTSAPRR
FT                 SPGXDGIPREFYLRTFDVIHRELNLLLNEALTGNIPPAFVEGIIVLVRKKG
FT                 GDNTARSYRPISLLNSDYKLLSRILKNRLEGVMRAHGVLSDGQKCSNSERN
FT                 IFQATLALKDRIASLRHHRRAGKLISFDLENAFDRVRHSFLFETMRSLGFN
FT                 QELIALLSRIASRSASRLLVNGHLSRPLEIQRSVRQGDPLSMHLFVLYLHP
FT                 LVRKLEEACGNDLLVAYADDISVIVTSXAQIEALNEIFTRFGIAAGAKLNL
FT                 RKTVAINVGVCEGNEINTHWLQTVNTVKILGVVFANSIRLMTTLNWNTLVG
FT                 KFSQQMWLQSLRTLTXHQKVIMLNTFGTSKLWYLSSVLPPLGVHTAKITAT
FT                 MGKFLWRGIVARVPMMQLARDKEHGGLNLHLPALKCKSLAINRHMQEIDSL
FT                 PYYRSLLHHXNPRPAIPIDHPDIKLILSXLSQIPHQIQQHPSADQIHKFFV
FT                 QQTEVPKVERNSPATDWPRAWRNINXKQLSSXERTKLYLLVNEKLEHRKLL
FT                 FAMQRVADENCEHCGNHIETLRHKLCDCTRVGPAWTVLQRRLAGXMNGWRR
FT                 LTFDELARPTLIGINKAKRVXILKLLVKYICHVNESNDRIDVDALNFLLDL
FT                 NX"
XX
SQ   Sequence 4450 BP; 1181 A; 1185 C; 1082 G; 949 T; 53 other;
     ttcagttatc gctcagcttc tgagacgcac aggcgtgttt acgattgcgc tcctcattag        60
     tgaagcactt ttttcagatc gttcaatcga tatttctgtg ttgtgccgcg tcgcgggtat       120
     ggtcgcgatg aggcgggaaa acacttttcg aatagactat tcgtgcttcc cagtaaagcc       180
     gtctttcgaa aaagtgcacg gmttctgccg ttcagtgctt gggctgaaga aagaagacgt       240
     cgaaagacta cagtgtcaca agggcgaaca atgtgcattc gtcaaggtca gcgacctgac       300
     gcttgcacaa aaaatwgtgg acgaacatga tgcccgtcat gaagtggagt taaacgggaa       360
     gaagcacaag cttcgtatca ccatggaaga tggtagtgtg gaagtgaaga ttcacgatct       420
     gcccgaaaat gtkcccgaag agaagatcgt cgagttcttg tgcgcgttcg gcgaagtaat       480
     ctscatccga gagctaacgt ggggagaggg ctacgagttt gctggtatac cactcggcat       540
     atggtcggcc cgtatgttgg tacaaaaaaa tattgactcg tgggtcacca tcgacgggca       600
     gcaggcatwt attgtctaca aagggcagct gcagtcgtgc aaatactgca aagagcaggc       660
     acacactggc atttcttgtg tccaaaacaa gaaactgctg gtgcaaaaga gctatgccam       720
     cgtgacgaaa caaackggat caacacgacc accgccgaaa aaaacagctg gcacgaaacc       780
     ascaagcgca aaacmgatcg ggccgaaacc tcccgttctc ccaacagcaa cgtcggatgc       840
     ctttcccgag cttccgaagt cttcgagcca gcccgaacag cctgcctcga cttctaaatc       900
     cgatgctagg ttcgatttga caacgtcccc ccgcccgcaa acccaacgcg kgcatggatc       960
     gtcgtcgtcg ctccgagcac ctcatgtcga agagtcacca aaagccaaca ttgttttggt      1020
     tgactgcttc aaaaagccga cgaatgcgat gcgatcgcag agcaagagcg gcaatggcaa      1080
     cgaaaccgac gattcttcca cttccacgaa tagcagacga agcgcgcgag gccgaccacc      1140
     cggcaaaaag ccccgtcggg aagatggtga cgacgagcag gatgaagact atcacccata      1200
     aatggctctc tcgtcctata acatctcgtc catcaacatc ggcacgatca ccaaccccac      1260
     gaaactmaac gcgctacgta acttcatcag cagccagagc ctcgatattg tgtgtctgca      1320
     agaggtggaa aacgaccagc tctccttgcc tggcttcgtc gtatacacca atgtagacca      1380
     cgcgaggaga ggtacggccg ttgcggtgaa ggaacacatc caagtctctc acgtcgagaa      1440
     gagtttggat agccgactac ttgcgctgcg agtgcaagac acgaccatct gtaacatcta      1500
     cgctccctcc ggttctgcgc aacgtgctgc tcgggaggag ttctttaatg gaactctcgc      1560
     ctattacctc cgtcatcgta ccgcacacgt cattctsgct ggcgatttca actgcgtatt      1620
     gcgcgcatgc gactcaacca gccctaacgc aagccctgct ctcaagacag ccgtgcaaca      1680
     gctgcagctg catgatgtgt gggaaaaact kcgcccacgt gacmctggtt tcacctacgt      1740
     ctgccgaaac gcgcaatcgc gkctcgaccg cgtktacgtc agcaatggwc tacgagaaaa      1800
     tttgcgaact gcgcacactc acgtgtgttc gtttacggac cacaaagcgc taaccgtcmg      1860
     amtatgcctc ccccagctcg gscatgagcc tgggcgcggt ttctggtctt tgcggcctca      1920
     tcttctgact gacgaaaacg ttgcggagtt ccagtataag tggcaatatt ggacccggca      1980
     gcgacgaaat tatgcgtcat ggattgagtg gtggmtcacg tacgcwaagc cgaaaatwaa      2040
     aagttttttc aggtggaagt ctcgagaatt tttcgatgaa ttccacaatc agcaccaacg      2100
     gctttatgct gaactwcagc tagcgtacga tgggtactac cagcaccctg aaatgctgcc      2160
     cacgataaac cggctaaaag gggaaatgtt ggcgctgcag aggaattttt cccacatgtt      2220
     catgcgcatt aatgaaacgt acgtggcggg wgaaccwctg tcgatcttcc agttggggga      2280
     aaggcgaagg aaaaagacca tcatcaccga gctccamcgg ggtgaaaatg amatcatcaa      2340
     cgagccacaa gcgatcsaag cgaatttgtw tgacttcttc tcccagctct actcggagga      2400
     agcaccaaac agcaacgaka acggttttgc cwgcgagcgc gcaatcccac cgaacgaccc      2460
     ggtgaacgaa gcatgtatgg aggagataac aacagcagaa attttgtctg ctatcaaaac      2520
     aagcgccccg aggagatccc cgggcwgcga tggcatccca cgagagtttt atctccgaac      2580
     gttcgacgtc atccatcgag aattgaacct cttgctgaac gaagcgctca ccggcaatat      2640
     tccccccgca ttcgtggagg gaatcatcgt gttggtgagg aagaaaggag gcgacaacac      2700
     agctcggtcc taccgaccca tatcgctgct caacagtgac tataagttgc tatcccgcat      2760
     actcaaaaac aggctagagg gtgtgatgag agcgcacggc gttttgagcg acggacagaa      2820
     atgttcgaac tcagagcgca acatcttcca agcaacactc gccctcaaag atcgtatcgc      2880
     cagtctccgt catcaccgac gcgccggtaa gctcatwagc tttgatttgg agaatgcgtt      2940
     cgatcgggtc cggcactcct ttctctttga gaccatgcga tctctcgggt tcaaccaaga      3000
     actcatcgct cttctttctc gcatcgccag ccgstctgct tctcggctac tcgtcaatgg      3060
     gcatctctcc cgcccgctcg aaatccagcg ctcggtccga cagggggacc ctctctccat      3120
     gcacctcttc gtgctgtacc ttcacccact ggtgcgcaaa ctggaggaag cgtgtggcaa      3180
     cgatcttctc gtwgcgtatg cggacgacat cagcgtcatc gtgacgtcag mggcgcaaat      3240
     cgaggcgctc aatgaaattt tcacccgctt cgggattgcc gccggtgcga aattaaattt      3300
     gcgsaagacg gttgcgatca acgttggggt ttgcgaaggc aacgaaatca atacccattg      3360
     gctgcaaact gtcaacacag tcaaaatttt gggtgttgtc ttcgcaaatt ccatacggct      3420
     aatgacgacc ctcaactgga acacgctggt gggaaagttc tcgcagcaaa tgtggttgca      3480
     gtcwctkcgc accttaacak tgcaccagaa ggtaatcatg ctcaacacst ttggcacgtc      3540
     gaagttatgg tacctttcgt cagtgctgcc ccctttgggt gtacacacgg cgaaaatcac      3600
     cgccacaatg ggcaaattcc tatggagagg aatcgtcgct cgcgtgccaa tgatgcagtt      3660
     ggcccgcgac aaagagcacg gaggcttgaa tcttcatttg ccagcattga agtgcaagtc      3720
     tttggcaatc aacaggcaca tgcaagagat cgattccctt ccctactatm gatcccttct      3780
     tcaccacgwg aatccccgcc cagcaattcc catagatcat cctgatatca aattaatcct      3840
     gtcamattta tcccaaattc cccaccaaat ccaacaacac ccctccgccg atcaaatcca      3900
     caagttcttc gtgcaacaaa cagaggtgcc caaggtggag cgtaacagtc cwgcgaccga      3960
     ctggccacgt gcgtggcgaa acatmaacat saagcagctc tcgtcgswgg agcgaacgaa      4020
     actgtacctg ctcgtgaacg agaaacttga gcaccgaaag ctactgtttg cgatgcagcg      4080
     agtggcggac gaaaactgcg aacactgtgg gaaccacata gaaacgctcc ggcacaaact      4140
     gtgtgactgc actcgcgtcg gcccggcctg gacggtcctt cagcgaagat tagcagggmt      4200
     catgaatggt tggagacgac tcacattcga cgaacttgcg aggcctacac tgataggaat      4260
     aaacaaagcg aaacgtgtcg akatcttgaa gcttttagtg aaatacatct gccatgttaa      4320
     tgagagtaac gataggattg atgttgatgc tttgaacttc ttgttagatt tgaacwatta      4380
     aattgtatat agctgtaaac gaacttgaca aataaaacct aacttttaaa aaccaaaaaa      4440
     aaaaaaaaaa                                                             4450
//
ID   L1_Ele4     repbase;    DNA;    INV; 4683 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4683
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4683
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 20
CC   sequences with >93% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1406
FT                 /product="L1_Ele4_1p"
FT                 /translation="MAQVKPRENTFRVDLTNFPKRPSFEDLHLFVHNVLGL
FT                 KLEQVVRLQMNHVQNCVHVKCATLKIAQDTVDLHNGKHEITINKTKVKVRL
FT                 VMEDGGVEVKIHDLSENIRNDDIVAYLKQYGEVITLQEQMWGDIYTFKSRP
FT                 SGVRVAKMILRRHIKSFVTIQGEQTLVTYRGQPQTCKHCMNAIHTGISCVE
FT                 NKKLIGQKTDLNARLNSDRQRTQGYAGVLSSPPPDQEALSMNFVDLNEHNR
FT                 KAAAVSNTSTSTQSKEEIVVEMASDANEPQSSAGPASSDAASAEQHTENVD
FT                 QPNDVELNKALTGASWAQLVNAESPNDVQMQLSDRPNGQSRDSSLLDEARG
FT                 GSTKIVPTQVRTDISPTSVFKKPQDDNCGGSDYSMEISDNEGNAYQCSSEK
FT                 EFTTVRKGRDRSKKQRVGK"
FT   CDS           1417..4617
FT                 /product="L1_Ele4_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANRTSSYNIASINTNAISSNTKIQALRTFIRLTDLD
FT                 IILLQEVEDPYLTIPGFNVITNVDSQKRGTAIALKSHMTCSNIQRSLDSRV
FT                 ITVTLEGSVKIVNIYAPSGTTNYASRENFFQNIVPFYLQSTTEHLVLGGDF
FT                 NCVVSHKDATGTSNFSPALGNVLNSLHLKDTWDLLKPNQIQYSYIRPNCAS
FT                 RLDRLYISESLIEQLRTAEFYVTSFSDHKSYKIRCCLPNQGRNFGKGFWSI
FT                 RAHVLTEDNMQEFEIKWNRWLRERRNFSSWMSWWVNCAKPKIRSFFRWKTN
FT                 ESFRTFHAENEVLYQRLRTAYDNLYQNPTGMTEINKIKGKMLLLQNQFSHS
FT                 FERLNDKLISGEKLSTFQLADRIKRKKNSTITTITDNGRVLRNLDDIESHV
FT                 FNYFNQLYATQNHQPSTNFPSNRTIDMNCEANNEAMNEITTEDIFFAIQSA
FT                 AGRKSPGNDGIPKEFYVKAFDIIHRQLNLILNEALQGNLPLEFLEGVIVLC
FT                 RKNSNHSSITAYRPITLLNCDYKLLARILKLRLEKIMINNRILNENQKCSN
FT                 SGKNIFEAVLGIKDKIAEINCKRKVGKLISFDLDHAFDRVDQNYLLSIMRE
FT                 IRFNNDLIAILEKIMQNSRSKILINGHLSQNVPIQRSIRQGDPLSMHLFVI
FT                 YLHPLIEKLCTICDNRLELVVAYADDISVIIVDDHKIGVVRKAFENFGLCS
FT                 GAVLNLAKTIALNIGSNNDRSNMYEWLNIHDSVKILGITYFNSLKRTIDHN
FT                 WTEIIRSTSRLMWLYKTRLLSLHQKIILLNTFITSKLWFAASILSIPNAIL
FT                 ARITSQMGYFIWGRYPTRIAMDQLSLPFDKGGLNLQLPMHKCKALLINRFL
FT                 RCKQNLPFANSFEELMSNPPHIQGIPALYPCLKVIAKEVPYLPEHIIEHLS
FT                 AIELHKYYKSKLSTPKVMIEQSTVSWSKIWSNIRNKSLSPDEKSCYYLLVN
FT                 GKIPHATSLYRQNRLQSPMCQICRGANEDLEHKFSVCIRVRHLWNHILPKL
FT                 EIITGRRHKFRDFSLPELKNIEASAKRKALKLFIVYVKFIIEENVNLTTEA
FT                 LDFVLDYKLL"
XX
SQ   Sequence 4683 BP; 1577 A; 893 C; 927 G; 1286 T; 0 other;
     cagtttgcct cgtgcgttcg ccgcgttcag acgcaaaatc actgcgctga tagggttcgt        60
     tcgagttttt ttttgtatac acctagggtg tagaatatct tctgttttcg cgtcagtttt       120
     tctggcgaca ctctgtgtga attgcattag taaatgcaca acgcaacatg gctcaagtga       180
     aaccaagaga aaatacattc agggttgacc tgaccaactt cccgaagcgt ccttcattcg       240
     aggatttgca cttgtttgtg cacaacgttc tgggcttgaa gctggaacag gtggtgagac       300
     tgcagatgaa ccatgtgcag aactgtgtac atgtcaaatg tgcaaccctc aaaattgcac       360
     aggacacggt cgatctacat aacggtaagc acgagatcac catcaacaaa accaaggtca       420
     aggttagatt ggtaatggag gatgggggcg tagaggttaa gattcacgac ctctctgaaa       480
     acatccgaaa cgacgacatt gtggcgtacc tcaaacaata tggcgaggtc attaccctcc       540
     aagaacagat gtggggagac atctacacat tcaaaagcag accatcggga gtccgagtag       600
     ccaaaatgat cttacgcaga cacatcaagt cgttcgtaac gatacagggc gaacagacac       660
     ttgttaccta cagagggcaa ccacagacgt gcaagcattg tatgaatgcc atacacactg       720
     gcatttcatg cgttgaaaac aaaaagctaa ttggccaaaa aaccgatctc aatgcaaggc       780
     tgaattcaga tcgtcagaga actcaagggt atgcgggagt actcagttct ccaccgcctg       840
     accaagaagc gctctccatg aacttcgttg atttgaacga acacaaccgc aaagctgcgg       900
     cagtttctaa tacatcgacg agtactcaat ccaaggaaga aatcgtcgtg gagatggcga       960
     gtgatgcgaa tgaaccccaa tcatcagcgg gacctgcctc ctcagatgct gcgagtgctg      1020
     agcaacatac tgaaaatgtg gatcaaccta acgatgtgga actcaacaag gctctcaccg      1080
     gagcgagctg ggctcaactt gtcaatgcgg aatcaccgaa tgatgtacaa atgcagcttt      1140
     ccgatcgccc taatggtcaa agcagagatt cgtctctact tgatgaagcc agagggggat      1200
     cgacaaagat cgtacctaca caggtaagaa ctgacatcag tccgacgagc gttttcaaaa      1260
     aaccgcagga tgataactgt ggtggcagtg actactccat ggaaatatcc gacaacgaag      1320
     gtaatgcata tcaatgttca tctgaaaaag agttcacgac tgttaggaaa ggccgagatc      1380
     gatctaagaa gcaaagagta ggtaaataga tttgcgatgg ccaatcgaac atctagttat      1440
     aacatagcca gcatcaacac taacgcaatt tcaagcaaca ctaaaattca ggccttacgt      1500
     acatttatca gattaacaga tttagacata atcttactac aagaagttga agatccatac      1560
     cttacaatac cgggtttcaa tgtgataacc aacgttgata gccaaaaacg aggaaccgcg      1620
     atagctttga aatcccacat gacatgttca aatattcaac gtagtcttga cagtcgagtg      1680
     ataaccgtta ctttggaagg tagtgtaaag attgttaata tctatgctcc atcgggaacc      1740
     acaaattatg ctagcagaga gaactttttc caaaatattg taccatttta cctacagtcg      1800
     accacggaac acttagtgtt aggtggcgat ttcaattgtg ttgtatcaca taaggatgca      1860
     accggaacta gcaacttcag tccagctttg gggaatgtgc taaacagttt gcacctaaaa      1920
     gatacgtggg atctgctcaa accgaaccaa attcagtaca gttacattcg accgaactgt      1980
     gcatctcgtc ttgatcgatt atatatttcg gaatctttga tagaacagct tcgaacagcg      2040
     gaattttatg taacatcgtt ctctgatcat aaatcttata aaattagatg ctgcttgccg      2100
     aatcagggta gaaattttgg aaagggtttt tggtcaatac gtgctcatgt tttgacagaa      2160
     gataacatgc aggaattcga aatcaaatgg aatcgctggc ttcgcgaacg tagaaatttt      2220
     agcagctgga tgtcttggtg ggtgaattgt gccaaaccaa aaattagaag tttttttcgg      2280
     tggaaaacaa acgaatcatt tcgaacattt catgcagaaa acgaagttct gtatcaacga      2340
     ctaagaacag catatgataa cctataccaa aatccaacgg gaatgacaga aattaacaaa      2400
     attaagggga aaatgctctt gttgcaaaat caattttcgc attctttcga aagactgaat      2460
     gataaactca tctcgggaga aaaactttca acttttcagt tagctgaccg tattaaacgg      2520
     aagaagaata gtacaattac tacaattact gacaatggta gagttttgcg caatttagac      2580
     gacattgaaa gtcacgtttt caattacttc aaccagcttt acgccactca gaatcatcaa      2640
     ccaagtacga actttcccag caatcgaaca atagatatga attgtgaagc taataatgaa      2700
     gcaatgaatg aaattacaac tgaagacata ttttttgcca ttcaatcagc ggctggcaga      2760
     aaatcgcctg ggaatgatgg cattccaaaa gaattttacg ttaaagcttt tgacattatt      2820
     catagacaat tgaatttaat tttaaatgaa gcgctccaag gaaacttgcc tttagagttt      2880
     ttggaaggag taattgttct atgcagaaaa aactccaatc attcatcaat aacagcatat      2940
     agacccatca ctttgttgaa ttgtgactac aaattattag ctcgaatttt aaagttacgt      3000
     ttggaaaaaa taatgataaa taaccgaatc ctaaatgaaa atcaaaaatg ctccaactca      3060
     ggtaagaata tttttgaggc agttttagga attaaagata aaatagctga aattaactgt      3120
     aaacgcaagg taggaaaact aatttcattc gacttagatc acgcttttga tcgggtcgat      3180
     caaaattact tactcagtat tatgagagaa attcggttca acaatgattt gatcgcaata      3240
     ctggagaaaa ttatgcaaaa ttcacgatct aaaattctta taaatggaca tctatcccaa      3300
     aatgttccca tccaacgatc catacgccag ggcgaccctc tgagcatgca tttatttgta      3360
     atatatctgc atccgttaat agaaaagtta tgtacaatct gtgataaccg gttggaactg      3420
     gttgttgctt acgcagacga catttccgtt attatagttg atgatcataa aattggagta      3480
     gtaagaaaag cttttgaaaa ttttgggctc tgttcaggag cagttttaaa tttagcaaaa      3540
     acgatagctc tcaacattgg atcgaacaat gatcggtcca atatgtatga atggttgaat      3600
     atacacgatt ctgtaaaaat cttagggata acttatttca attcactcaa gaggacaatt      3660
     gaccacaact ggactgaaat tattcgaagt acatcacgac taatgtggct gtacaaaact      3720
     agacttcttt ctttgcacca aaagattatt ctcttaaaca catttataac atctaaactg      3780
     tggtttgcag catcaatttt aagtattcca aatgccatat tagctaggat aacatcgcaa      3840
     atgggatact ttatttgggg caggtatcct acaaggatag cgatggatca gctgtcactt      3900
     ccctttgata aagggggctt aaatcttcaa ttgccgatgc acaaatgcaa ggccctttta      3960
     ataaatcgat ttttgagatg caagcaaaat ttacctttcg caaattcatt tgaagagctt      4020
     atgagcaacc caccccatat tcaaggaatt ccggctctat acccttgtct caaagtaatt      4080
     gctaaagaag tgccttatct tccggagcac attattgaac atctatcagc aattgagcta      4140
     cataaatatt ataaatctaa gttaagtaca ccgaaggtaa tgatagaaca atccactgta      4200
     tcctggagca agatttggag taacataagg aataaatctt tatcaccaga tgagaaatca      4260
     tgctattact tgctagtaaa tggtaaaata cctcacgcta cttcgcttta tcggcaaaat      4320
     aggttacaga gtccgatgtg tcaaatctgt cgaggtgcaa atgaagatct cgagcataaa      4380
     ttttcagttt gcattcgtgt tagacatctg tggaatcata ttcttccaaa attagaaata      4440
     attacaggca ggaggcataa attcagagat ttttccttac cagaactaaa aaatattgaa      4500
     gcaagtgcaa agcgcaaagc tcttaagtta ttcatagtat atgtgaagtt tattatagaa      4560
     gaaaatgtaa atcttactac agaagcacta gattttgttt tagattataa gttgttgtaa      4620
     ttatgtaata tgtgtgtatg tatttgtaaa taatgttctt aataaatgtg tttataaaaa      4680
     aaa                                                                    4683
//
ID   L1_Ele5     repbase;    DNA;    INV; 4851 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4851
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4851
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 23
CC   sequences with >90% identity, and ~98% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1193
FT                 /product="L1_Ele5_1p"
FT                 /translation="MAAVRARENTFKVDLSNFPKRPSFEEIHSFVHETIGL
FT                 SVDQVLRLQMNHAQNCAHVKCRDLKTAQDAVDHHNGRHELEVNKTKFKVRL
FT                 MMDDGGVEVKIHDLSENVRNEDIAAFLKQYGEIISIKELVWGDNFAFKGVS
FT                 SGVRVAKMILHRHIKSFVTIMGEESLISYRNQPQYCRHCTNPSHPGLTCVE
FT                 NKKLLGQKTDLNNRLKAVQKKTSYASVLDRSKVVASLMPEFVATNLNELNA
FT                 NARSSTSTAVVEERGASGVSPPAAPADDERMEEGEIQKNTSDDTDAATADA
FT                 AAAAAAATVVENIAAAPVAGSSAVPLLPPLLPPLLPPLMPPLMPRLLML"
FT   CDS           1597..4791
FT                 /product="L1_Ele5_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MSRRDTLSYNIGSINTNTVSSDNKIAALRSFVRLLDF
FT                 DIVLLQEVECVSLCIPGYNIIFNVDESRRGTAIALKSHIPFSNVQRSLNSR
FT                 ILTVKIGDSLTICNIYAHSGSQNYSARENLFKEQLPFYLQAASEHVILGGD
FT                 FNCVISNKDATGTNNQSPALKQLVENMQLNDTWDCLKRNVIDYSFVRSNSA
FT                 SRIDRIYVSRSLVPHLHSSELFATSFSDHKAYKIRCGLPNLGKPFGRGYWS
FT                 MRAHVLNEENLAEFEQKWTRWLREKRNFNSWMSWWTEYAKPKIRSFFRWKT
FT                 NEAFREFHATNEMLYRQLRNAYDHLYQNPNGVAEVNKIKAKMLQVQSNFSK
FT                 AYERLNDRYVCGEKVSSFQIGDRYRRKTTISSIRHEDRCITTGTEIENHVH
FT                 DFFRNLYSEEQLHSFEYSPTNRIIPADSNSNNAMMHEITTTELFFAIKSSA
FT                 SRKSPGSDGIPKEFYLKAFEIIHPQLNLIINEALQGNVPENFVEGIVVLCK
FT                 KKTNDQTIKAYRPISLLNYDYKLLSRILKERLEKVMVEQNLLNASQKCSNS
FT                 DRTIFEAVHAIKDRIAELNCRRRHGKLISFDFDHAFDRVNHDFLKVVMRNI
FT                 HLNGNFVQLLGKIMSSSKSRLLINGNLTPSFPIQRSVRQGDPLSMHLFVLY
FT                 LHPLLEKLRAICNGPMDLVVAYADDISIIITDERKLAIIKQAFVNFGRCSG
FT                 SLLNLNKTFTVNLGPHRDADDINWPMAKDSIKILGVTFFNSQKQLIDYNWA
FT                 DVIRKTSRLMWMYKARNLTLHQKIIVLNTFITSRLWFLASIISVPNHAVAR
FT                 ITSHIGSFIWERFPTRVPIEQLTLPKNMGGLNLHLPMHKCKSLLVTRFLKE
FT                 IRETPFASSLAQHLENPPNLAAIPALYPCLKSLSKVLPYIPRRIRENPDAA
FT                 LLHNHFREKLNKPKVMQENTNITWRRVWQNIRIKGLTSIEQSMYYLLVNGK
FT                 IPHAKLLHRQNRVANPFCQLCPNTEEDLEHKFSSCPKTSALWNHLQSKLET
FT                 TVGRRMTFTSLRFPELKNMNRTCRYQALKMFISYVKYVLDANDQLSVEALD
FT                 FILNCVFV"
XX
SQ   Sequence 4851 BP; 1490 A; 1102 C; 999 G; 1258 T; 2 other;
     tcacagttag gttcaagcta tcgctgcgac cagacgtatt ttcaaaccgc tccgtatcgc        60
     tttgtttcga gtttcgttcg tttattctcg caccttgttg tgcagaattt caatcgcgtc       120
     agttttctgt ctgacgacca tccaaacccg tgctattcaw aatagcaacc atggctgccg       180
     tacgtgcccg tgagaacacg ttcaaggtgg acttatccaa cttcccgaag cggccttcct       240
     ttgaggaaat ccactctttc gttcatgaga ccattggact gagtgtcgat caagtgctgc       300
     gcctgcaaat gaaccacgcg caaaattgcg cgcacgtgaa atgccgtgat ctgaagactg       360
     cccaggatgc tgttgatcat cacaacggtc gtcacgagtt ggaggtgaac aaaacgaagt       420
     tcaaagttcg cttgatgatg gacgatggag gcgtcgaagt caagatccac gatctgtccg       480
     aaaacgttcg gaacgaagac atcgctgctt ttctcaagca gtacggcgag attatctcga       540
     tcaaggagct tgtttgggga gacaactttg cgttcaaagg cgtatcatca ggagtgcggg       600
     tggctaagat gattttgcat cgccacatca agtcgttcgt tacaattatg ggtgaggaga       660
     gcctaatctc ctacagaaac cagccgcaat actgtaggca ttgtaccaac ccatcgcacc       720
     cgggattaac gtgcgtcgaa aataaaaagc tgttgggaca aaagaccgac ctcaacaaca       780
     gactgaaggc agtccagaaa aaaacaagct acgccagcgt tctggaccgg agcaaagttg       840
     tggcctcact catgcctgag tttgtagcta caaacctaaa tgaactgaat gcgaatgcac       900
     gttcgtcaac atcaaccgcc gtagtcgaag aaaggggagc gtcgggcgtc tcgcctcccg       960
     ctgcgcctgc tgatgacgaa cggatggaag aaggcgaaat ccaaaaaaac acctcggatg      1020
     atacggacgc tgccactgct gatgctgctg ctgctgctgc tgctgccact gtcgtcgaga      1080
     atattgctgc tgcccccgtt gccggctcct ctgccgtccc attgctgcca cctctgctgc      1140
     caccgctgct gccaccgctg atgcccccac tgatgccacg gcttctgatg ctgtgactgc      1200
     tcctgttgtt gatcgttcca ccctgcagac cgatccagac caactgaaaa acaatatcgg      1260
     cgaaccgagc cacgtgagtg cattcaaaat tcctatcacc agataccctt ccaatccctt      1320
     gtccatggag atttccgaga ctgaaagcaa cgagtcgtcc actgaaggcg gtccgttcct      1380
     gaaagtgaag cggccaagag ggcgcccgaa gaaacttaaa actggctccc aataactagt      1440
     ctttgacggt cgatctactt aacaccatta acgaaatttc caaaaacgat ccgcaatact      1500
     aacacacgaa aactaaacat aaaacctact ccaatcctta aaattaatct cgagtcggcc      1560
     gcgagtactt cggctcaaac cccataacta tatgtgatgt ccagaagaga taccctcagc      1620
     tacaatattg ggtctatcaa taccaatacc gtttctagtg ataataaaat agcagctctt      1680
     cgttcgtttg tgcgtttgtt agatttcgac atcgttcttc tccaggaagt tgaatgtgtt      1740
     agtctttgca ttccgggtta caatattata tttaatgtag atgaatccag aagaggcacc      1800
     gccatagctc tcaagtcaca catccctttc tcaaacgtac aaagaagttt gaatagcaga      1860
     attctaacag tcaaaattgg cgattctctg actatttgca atatttatgc ccactctggt      1920
     tcacaaaatt actctgcccg cgagaatttg ttcaaagaac aattgccctt ctacctacag      1980
     gctgcttccg aacatgtcat ccttggcggg gattttaatt gtgttatctc caataaagat      2040
     gcaactggga caaacaatca aagtcctgct ctaaaacaat tggtagagaa catgcaactc      2100
     aatgatacat gggattgcct aaaaagaaat gtgattgatt atagtttcgt tcgttctaat      2160
     tccgcttctc gcatagatcg tatttacgtc tctaggtcgc ttgttccgca tctccactct      2220
     tcagaactst tcgctacgtc tttttcagac cacaaggctt acaaaatccg atgtggtctg      2280
     ccaaatttag gtaaaccatt tggccgcggt tattggtcta tgcgtgctca tgttttaaat      2340
     gaagaaaatc tcgcagaatt cgagcaaaag tggactcgtt ggttgcggga gaaacgtaat      2400
     tttaatagct ggatgtcttg gtggactgaa tatgctaaac caaagatcag aagtttcttt      2460
     aggtggaaaa ccaacgaagc attccgtgaa tttcacgcaa cgaacgaaat gttgtaccgt      2520
     caactaagaa atgcatatga ccacttgtac caaaatccaa atggtgttgc cgaagttaat      2580
     aaaatcaaag caaaaatgtt gcaagttcaa agcaatttct cgaaagcata cgaacgttta      2640
     aacgatcgtt atgtgtgtgg agaaaaagtg tcctctttcc aaatagggga tcgttatcga      2700
     cgaaaaacaa ctataagttc aattcgtcac gaagatcgtt gcatcactac agggacggag      2760
     atagaaaatc acgttcacga tttcttccga aatctttaca gtgaagaaca attgcacagt      2820
     tttgaatatt cgcctacgaa tcgtattatt ccagctgatt caaacagtaa caacgccatg      2880
     atgcatgaga taacaacgac tgaactattc tttgcaatta agtcaagtgc atctcgaaag      2940
     tcaccaggaa gcgatggaat tccaaaagaa ttctacctga aggctttcga aattattcat      3000
     ccacagctca atttgataat taacgaagcg ttgcaaggaa atgtacccga aaattttgtt      3060
     gagggaatag ttgtgttatg taaaaagaaa acaaacgacc agactatcaa agcgtacaga      3120
     ccgatcagtc tgctaaatta tgactataag cttttgtcca gaatcctaaa agagcggttg      3180
     gagaaagtta tggttgagca aaacttactg aacgcaagcc aaaaatgctc gaactcagat      3240
     agaactatct tcgaagctgt gcatgctatc aaagatcgaa tagcagaatt gaactgtagg      3300
     agaagacatg gaaaattaat ttcctttgat tttgatcatg ccttcgatcg tgtaaatcat      3360
     gatttcctca aggtcgtgat gcggaacatc catttgaatg gaaactttgt gcaactttta      3420
     gggaagatta tgtcctcctc aaaatctcgt ttgctaatca acggaaatct cactccaagc      3480
     ttccccatcc aacgttctgt tagacagggc gatcctttaa gtatgcattt attcgtcctt      3540
     tacctacatc cactcctaga aaaattacga gctatctgca atggtccaat ggatctcgtg      3600
     gtagcatacg cagacgatat ttccatcata ataacagatg aacgcaagct agcaatcata      3660
     aaacaggctt ttgtaaactt tgggcgctgc tccggatcac tactgaacct taacaaaacg      3720
     ttcacggtaa acttaggacc acatcgggat gcagatgaca taaattggcc gatggccaaa      3780
     gattcaatca aaattttggg agtaacgttt ttcaattccc aaaagcagtt aatcgactac      3840
     aattgggcgg atgttatcag aaaaacatct cgattaatgt ggatgtataa ggcaaggaac      3900
     ctcacactgc accagaaaat aattgtgcta aacacattca tcacatcgag gctctggttc      3960
     ttagcctcga taatcagcgt accaaatcat gccgtagcac gaattacatc gcacattgga      4020
     agttttatat gggagcgttt tccaaccaga gttccaatag aacagctcac tttgccgaaa      4080
     aatatgggtg gtttgaactt acacctacca atgcataaat gcaaatcttt gttggtgaca      4140
     agattcctga aagaaattag agaaacacca tttgcgagtt ctcttgcgca acatttggag      4200
     aacccaccaa acctagctgc gattcctgct ttgtatccgt gcttgaagag cctctccaag      4260
     gttctgccat atattccaag aagaataagg gaaaatccgg atgctgcatt actccacaat      4320
     cacttccgcg agaaactgaa taaaccaaaa gtcatgcaag aaaataccaa cataacctgg      4380
     aggagagtgt ggcaaaacat cagaatcaaa ggactaacat cgatagaaca atcaatgtac      4440
     tatctccttg tgaatgggaa gattccacat gcaaagctac tccatcgaca gaaccgagtt      4500
     gcaaacccat tctgccagct gtgcccaaat acagaggagg atctagagca caaattttcc      4560
     agctgcccga aaaccagtgc tctttggaat catcttcaat ctaagttgga gacaaccgta      4620
     ggaaggagga tgactttcac tagcctgaga tttcccgaat tgaagaacat gaacagaaca      4680
     tgccgatacc aggctctaaa aatgtttatt agttatgtaa agtatgtttt agatgccaat      4740
     gaccaactat cagtagaggc attagatttt attcttaact gtgtttttgt gtagaaagtt      4800
     catgaatgta atcaaatagt tccaataaac gtgtttaaaa aaaaaaaaaa a               4851
//
ID   L1_Ele9     repbase;    DNA;    INV; 4621 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1_Ele9.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4621
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4621
RA   Kojima K.K. and Jurka J.;
RT   "L1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 10
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           162..1331
FT                 /product="L1_Ele9_1p"
FT                 /translation="MNNRKIRENTFRVEFAKLPKKPTSEEVHKMVGLQLGI
FT                 TRSQLVCIQLSHTDECAFVKVTEQAIAQRVVDQYDNKLDYDVKGVKYKLRL
FT                 RMADGCVDVRLHDLSENTTNEQIRRHMEVYGDVLSVQELLWSDKHHFPGLS
FT                 SGIRLVRMVLREPIKSYITIDGESTLVTYPRQRQTCRHCGEYLHTGISCVQ
FT                 NKKLLAQKAGLNDRLKKASYAGAVRGNPAEAASTHQGNDTALISAQATNTS
FT                 TQAPSVQEASGESVGLRTDVEIETDNTNNAAGESADDPSNRSNQAPDIGNI
FT                 AQASTVPDEHGTDTASEYGSVEGSGPSHQSVPAQQPEPEAGPSSPGRVMQA
FT                 LLSITSNENEAQKGKHKQEDGSTSEDSSAFTVIGKQRGRGRSKKLKQ"
FT   CDS           1362..4547
FT                 /product="L1_Ele9_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MDSSSYIIGTVNINNITNKTKLEALHHFVRSQDVDIL
FT                 LLQEVENSSISIQGFNIIFNVDHTRRGTAIALKSHIKYTHVERSLDTRLIA
FT                 VRIHDKVTIINIYAPSGTQNRASRESFFNTTLAYYLRRATEQVIIGGDFNA
FT                 IIHPKDATGESNFSLSLKNTVQQAQIHDVWDRLRRRVTQHTYITHNSASRI
FT                 DRIYVSTGLLEHLRNVDTHVCSFTNHHALTVRLCLPNLGRATGRGYWSIRP
FT                 HVLTVENMDEFQLKWDYWTRRRHNYNSWMHWWLTFAKHKIRSFFRWKTKLK
FT                 YDEFHDRYQYLYSQLREAYDRYFGDRSVLPTINLIKGKMLRLQSEFSKMFV
FT                 HANESFVSGEPISAFQVGESRRKRTIINRLDLSDTEYIEDSTEIENHVYEH
FT                 FREMYSQREETLNTEFHMVKCIPDDSRANAKCMDPISTEEIYFAIKGSASK
FT                 KSAGPDGLPKEFYAKAFDIIHVHLNLILNEALRGEFTSDFTNGVIVLIKKK
FT                 GTNNTLKSYRPISLLNVDFKLLSRILKTRVERVMTQHSVISSSQKCSNHKR
FT                 NIYQATLSLKDRIAHLRENKRCGKLVSFDLESAFDRVNRTFLFDTMSSLGF
FT                 NANLIELLSKIGTLSNSRILVNGHLSREFPVQRSVRQGDPIAMHLFAIYLQ
FT                 PLITKLEHCLNDPEDLLVVYADDVTIITTDINKIERARLLFEQFGNSSGAC
FT                 LNISKTISLDIGLISDNNRLIISWLSTTDRVKILGIVFTNSVRLMTNFNWD
FT                 PLISKFAQQLWMHKMRLLSLHQKIVLLNSYVSSKIWYVASIVNINKSHIAK
FT                 LTTLMNTFLWSGCRNRIPINQLALDIEEGGLKLQLPGFKCKALLISRHLKE
FT                 IESMPFYSTYLENVGNPPNVRIIPSNCPCLQSIVQEAAYLPEQLESHPSPK
FT                 KVMYAFLKKVTIPKIMQKHPEVCWKHVWCSIASKTLSSDERSLYYILINQK
FT                 VMHRTLLVSMQLADTATCLHCSSADEDLEHLFSKCQRVRDSWRILTQMIEA
FT                 VVGRAYSFSELLFSNIHTSREKKTKTMKLFINYVKFINNVNNTVDASAIKF
FT                 HLENL"
XX
SQ   Sequence 4621 BP; 1499 A; 979 C; 964 G; 1179 T; 0 other;
     cagtaaggct tcgactaccg aagcgttaac acgtcgtttt gatagctcgt caatcggtga        60
     tattaagtga agtgtcgttg gtgaaccacg tgcaagttgg cccggaatcc ggtgccggaa       120
     aatcgttaca cagcgtgagc atctcggacg acggttcgag gatgaacaac cgcaaaatcc       180
     gcgaaaacac gttccgcgtg gaattcgcga aactaccaaa aaaaccaacc tcggaagagg       240
     tacacaaaat ggtcgggctt cagctcggca tcacacggtc tcagctggtg tgtatacagt       300
     tgagtcacac agacgaatgt gcctttgtga aggtcacaga acaagctatc gctcagcggg       360
     tagtggacca atacgacaac aagctcgatt acgacgtcaa gggtgtcaaa tataagctac       420
     ggctccgtat ggcggacgga tgcgtggatg tgaggctcca cgatctttca gagaacacta       480
     caaacgaaca gatccggaga catatggagg tttacggtga tgttctgtcc gtacaggaac       540
     tgttatggag tgacaaacac cactttccag gactctcatc aggtatccgc ctagtgagga       600
     tggttctcag agagccaata aaatcgtata tcacgataga cggagaatct acgctggtca       660
     cttaccccag acaaagacaa acgtgtcgcc attgtggaga atacctccac acaggaatat       720
     cctgtgtcca aaataaaaaa cttttggcac agaaggccgg tttgaacgat cggctcaaga       780
     aagcttcgta tgctggagct gtgagaggca acccggctga agcagcatca acacatcagg       840
     gaaacgatac agcattgatc tcagcacagg ctaccaatac atcgacgcag gctccttctg       900
     tacaggaagc ttcaggagag tccgttggat tgagaacaga cgtagaaata gaaacggaca       960
     acaccaacaa cgctgcgggc gagagcgcgg atgacccaag caatcgctca aatcaagctc      1020
     cagacatcgg caacatcgct caggccagca cggtacctga tgagcatggt actgatacag      1080
     cgtccgaata tggatctgta gaaggatcgg gtccctctca tcaatccgtt ccagcacagc      1140
     agccagaacc agaggcaggt ccttcgtcac ctggtcgggt tatgcaagcg ctattaagta      1200
     tcacatcgaa cgaaaatgag gcccagaaag gtaagcacaa acaggaagac ggtagtacca      1260
     gtgaagattc tagcgcattc actgtcattg gtaagcagcg tggtcgaggt cgctcaaaga      1320
     aacttaaaca gtagaaaaca tgacactcgc gaatttctaa aatggattcc tcaagctaca      1380
     tcataggtac cgttaatatt aacaacatta ctaacaaaac caaattagaa gctcttcatc      1440
     attttgtgag atcacaagat gtggacatcc tacttctcca agaggtggaa aacagtagta      1500
     tttcaattca aggatttaac attattttta atgtggatca tactcgcaga ggcactgcga      1560
     tcgcgctaaa aagtcacata aaatacactc acgtagaacg aagcttagat acaaggctga      1620
     tcgccgttag gattcatgat aaagtaacca ttattaacat ttacgctccc tctggcacac      1680
     agaacagggc atctcgagaa tcttttttta acacaacgtt agcttattat ctgcgtcgtg      1740
     ctacagagca agtgattatt ggcggggatt ttaatgcgat aatacatcca aaagacgcta      1800
     ctggcgaaag taacttcagc ctctctctca aaaatacagt acaacaagct cagattcatg      1860
     atgtatggga tcgcttgcgc cgaagggtca ctcagcacac atacatcacc cataattcag      1920
     cttccagaat cgaccgtata tacgtgtcaa ctggattgtt ggaacatctg agaaacgtag      1980
     atacacatgt gtgttcattt acgaaccacc atgcgttgac agttagacta tgcttaccaa      2040
     atcttggtag agcgactggc agaggatact ggtcaatcag accacatgtt ttaactgttg      2100
     aaaacatgga tgagtttcaa ttaaaatggg actattggac acgtcgaagg cacaattata      2160
     attcgtggat gcactggtgg ttaacctttg caaaacataa gataagatct ttttttcgat      2220
     ggaaaaccaa acttaagtat gatgaatttc acgatcgata ccagtatttg tattcgcagc      2280
     ttcgtgaagc atacgaccgc tattttggcg accgctcggt acttccaaca ataaacctta      2340
     tcaaaggtaa gatgctacgt ttgcaaagtg agttcagcaa aatgttcgta catgcaaatg      2400
     aaagctttgt atctggtgag ccaatctcag cattccaggt gggagaaagt agacgtaaaa      2460
     gaaccattat caatcgactc gatctatccg acactgaata catagaagat tctacagaga      2520
     tagaaaatca tgtctacgaa cacttccgag agatgtactc tcaaagagag gaaactttaa      2580
     acaccgaatt tcacatggtc aaatgtattc cagacgatag tagggcgaat gcaaagtgca      2640
     tggaccctat ttctacggag gaaatttact ttgccataaa aggaagcgct tctaaaaaga      2700
     gcgctggtcc agatggactg ccgaaggagt tttacgctaa ggcctttgat attatccacg      2760
     ttcatcttaa cctcatacta aacgaagcac taaggggtga attcacctct gatttcacta      2820
     acggtgtgat agtccttatt aaaaagaaag gcaccaataa cacactcaaa tcctatcggc      2880
     ctatttctct tttaaacgta gacttcaaac tattatctcg aatcctgaaa actcgggtag      2940
     aaagagtgat gacgcaacat tcggttatca gtagctctca aaaatgctcc aatcacaaac      3000
     gaaacatata ccaagccaca ttgagcttga aagatcgcat agcacacctc cgagagaata      3060
     aacgttgcgg taagctagtt tcattcgact tagagagtgc attcgatcgc gtcaaccgaa      3120
     cgtttctatt cgataccatg agctctcttg gttttaatgc gaatcttata gaattgcttt      3180
     ctaagatagg tactctttca aactcccgta tattagtaaa cggtcatctc tctcgtgagt      3240
     tccctgtgca gaggtcagtt cgtcagggcg acccgattgc tatgcattta tttgccattt      3300
     acctacaacc actgataaca aagctagaac attgtctcaa cgacccagag gatctgttgg      3360
     ttgtatacgc agatgatgta accataataa ccactgatat aaacaaaatc gagagagcca      3420
     gactgctgtt cgagcaattt ggtaattcat ctggagcttg ccttaacatc tccaaaacga      3480
     tttcgctgga tatcggttta ataagcgata acaatcggtt gataatatcg tggttatcga      3540
     caacggacag agtcaagatc cttggtattg tgttcacgaa ttcggtacgt ctgatgacca      3600
     atttcaactg ggatccactg atctccaagt tcgctcagca actttggatg cacaaaatgc      3660
     gtctactatc gttgcatcag aaaattgtgt tactaaacag ctatgttagt tccaaaattt      3720
     ggtatgtcgc atccattgtg aacattaaca aatcgcatat agcaaaactg accacattaa      3780
     tgaatacatt cttatggtca ggctgcagaa atcgaattcc catcaatcaa ttagctctgg      3840
     atattgagga aggaggtttg aagctacagc ttccaggatt taaatgcaaa gcattgctaa      3900
     taagtagaca cttgaaagag atagagtcga tgcctttcta ttctacatac ctagaaaacg      3960
     taggtaaccc tcctaacgta agaattattc cttctaactg tccttgtcta cagtcaatag      4020
     tgcaggaagc agcttatttg ccagagcaat tagaaagtca tccctcacca aaaaaggtta      4080
     tgtacgcatt tttgaaaaaa gtaactattc cgaaaatcat gcagaaacat ccagaagttt      4140
     gttggaaaca tgtttggtgt agtatagcat ctaaaacact cagctctgat gagaggagcc      4200
     tgtattacat tctaattaac caaaaagtca tgcatcgtac tcttctggta tcaatgcaac      4260
     tggcagatac agctacatgc ctacattgta gttctgcaga tgaagactta gaacatcttt      4320
     tttccaaatg tcagagagta agagattcgt ggagaatact aacacagatg attgaggccg      4380
     tagtaggtag agcttatagt ttctctgaat tgttattctc aaacatacat acttcaagag      4440
     aaaaaaagac aaaaacgatg aaattgttca taaactatgt caagtttatt aataatgtta      4500
     ataatactgt agatgctagt gcaatcaaat ttcacctaga aaacctgtag attatagttt      4560
     ttaatatgaa tgtaattata ccaatgacaa ataaacgatt tttataaaaa aaaaaaaaaa      4620
     a                                                                      4621
//
ID   L2-10_Hmel  repbase;    DNA;    INV; 2378 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2378
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1657
FT                 /product="L2-10_Hmel_1p"
FT                 /translation="HAPIRPIRIKHLPAPWLTEDIKKLQNKKNCAKLKYKS
FT                 NASENNRIKYIKARNRCNRVCRDKQRRHIHKSVVEEDNVEKAWKFLKSLGV
FT                 GKAKQNSNPCNIDLNKLNIHFSPSVTIDVPTKLKSLNQIRALPTPINHSFN
FT                 FTQFTESDVKKNILAISSDAVGADCISRKMIIPILDILIPVLTTILNFSIE
FT                 SDTFPSSWKEAQLTPLPKNRNPSSMSDFRPISILPFLSKVLERLIHQQLSK
FT                 YLTHNNLFNPLQSGFRPGYSTTTALVNISDNIRLGMENHQVTVMILLDFSD
FT                 AFNTIDFDILLAIMYSLNISPKVIDWFHSYLHGRKQRIRTQDSYSEWSPVL
FT                 AGVPQGGVLSPLLFSLFINYFCHNIASPYHLYADDLQICRQSSLHDLSNTI
FT                 LALNEELRXITVRSKSLGLKLNAKKTQAIIIGSPRLISKITFHELPLLSLD
FT                 GTCVPFTDKVKNLGIMFDQHLSWKPLISEVSRKIFSAVASLRRLRNILPIP
FT                 TKVALAQSLLLPILDYADCCYLDIKEEQLNKLERLQNVCIRFIFGTSQVRP
FT                 RIRIS"
XX
SQ   Sequence 2378 BP; 709 A; 476 C; 374 G; 816 T; 3 other;
     tcatgctcct ataagaccca tacgtattaa gcacttaccg gctccatggc ttacggaaga        60
     tataaaaaag ttacaaaata aaaaaaattg cgcaaaatta aaatataaaa gtaatgcaag       120
     tgagaacaac cggataaaat atattaaagc tcgaaatcga tgcaacaggg tgtgtaggga       180
     taaacaacga cgccatattc ataagtctgt tgtcgaggaa gacaacgtag aaaaggcctg       240
     gaaatttctt aaatcccttg gggttgggaa agcaaagcag aactctaatc cttgtaatat       300
     agatttaaat aaacttaata ttcatttctc tccttctgtt acaattgatg tacccactaa       360
     attaaaatct ctaaatcaaa ttcgtgcctt acccacccct ataaatcaca gtttcaattt       420
     cactcaattc accgaaagtg atgttaagaa gaatatattg gccatttcat ctgacgctgt       480
     tggcgctgat tgcattagtc gtaagatgat catacctatc cttgatatcc tgattcctgt       540
     cttaacaaca attctaaatt tttccataga aagtgatacc tttccttcat cctggaaaga       600
     agctcagcta acgccactgc ctaaaaaccg caatccttct tccatgtctg atttccgacc       660
     tatatccatt ttaccatttc tatcaaaagt ccttgagcgt ctcatacacc aacaacttag       720
     taaatacctg actcataaca acctttttaa tcctttacaa tctggtttca gacccggtta       780
     tagtacgact actgcactgg ttaacatatc ggataacatt cgtctgggta tggagaatca       840
     tcaagttacc gttatgattc tgcttgactt tagtgacgcc ttcaatacca tagactttga       900
     tatcctatta gccattatgt attctcttaa catatctcct aaagtgattg attggtttca       960
     ttcttacttg catggtcgca agcaacgtat ccggacacag gattcttatt ctgaatggtc      1020
     cccggtgctt gctggcgttc cacaaggtgg cgtgttgtcc cctctcttat tttcactatt      1080
     tattaattat ttctgtcata atattgcttc tccctaccac ctttacgctg acgacctgca      1140
     aatatgtcgt caaagttcgt tgcacgatct ttcaaacaca atcttagcat tgaatgaaga      1200
     actgagagbt attacagtac gtagtaaatc cttaggctta aaactaaatg caaaaaagac      1260
     tcaagcaatt ataataggta gtccaagact tatctctaaa attacgtttc aygaattgcc      1320
     attattatcg cttgatggaa cctgcgtccc ttttactgac aaagttaaaa atctaggaat      1380
     tatgtttgac cagcatttat cctggaaacc gttaattagt gaggtaagta gaaaaatatt      1440
     ttcagctgtt gcgtcgttac gtcgactacg taatatctta cccattccta ctaaggttgc      1500
     gctggcacaa tcactcctac taccaattct cgattatgct gattgttgtt atcttgacat      1560
     aaaagaggag caattaaata agcttgagcg gctccaaaat gtttgcataa ggttcatttt      1620
     tgggacttcg caagtacgac cacgtatccg aatttcgtaa aaaactcaag tggctcccta      1680
     ttcgacttcg ccggaatact catgttctct gtcttttgta taatgttctc ttttctacgc      1740
     attccccttc atatcttaaa gaacgattta agtttttatg tgaatcacat aatttaccac      1800
     tccgctctaa gtctcgttta acccttgaat ttcctcgttc ttcttcttcc ttctatacca      1860
     attccttcac tatcaaatct gtccgcttgt ggaattcctt acccataaca gtcaaacaag      1920
     ctttgactat acaaacattt aaaaagaggc tgaaagatta ttatttaacg ctataagtac      1980
     ctaggtttcg atagtatttt ttgtatttat ttcatgttct tgtttctgtg ttcaaaaaaa      2040
     aaaaaaatta ttttatacca aagtattatg tatttattta tatatttatg tatgtatgta      2100
     tgtatgtatg tatgtatgta tgyatgtatg tatgtatgta tgtatgtatg tatgtattta      2160
     tgtatttatg tatgtgtgtg taaaactaga tatcagctct gtacacccct tcccttttca      2220
     gacaatgtat tctctcttct acccaaaggt tgcctggaag agatcgctct cttagcgata      2280
     aggccgccaa ttgtactgtt ctatgtatta atacatgtat atgtgtcttt tctatggtac      2340
     aataaagagt attttgtttg tttgtttgtt tgttatat                              2378
//
ID   L2-11_Hmel  repbase;    DNA;    INV; 2910 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-11_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2910
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2500
FT                 /product="L2-11_Hmel_1p"
FT                 /translation="LLLGVFYSPSLHIDYFHTLETLLEKHVPSVDHTIILG
FT                 DFNTCIIKNDLRAKQLLNIINSSNLKLLPSNPTHSFPNCAPSQLDLMIVSS
FT                 VDHVMIHGQLPADAFSYHDLMYLSYNVRPPKPKPSVVMRRSFKNXXNXEFL
FT                 VDLNDIDWNVIFNTTTIDDKLEIFNSILTELYDKHAPFRPIKLKHLPAPWL
FT                 TPDIKSLMTKRNVAKSKYKHNPTDQNLLRYKSLRNRCSRVCRDAQXNYIDL
FT                 SLQNLSPRKLWKFLXSLGIGRQRKDLNCNLDVDALNKHFASITPMDNTIKA
FT                 NTLNYINSLPSPTIVPFNFAXITPSQVRNSILAIKSDASGYDGINRKMIIL
FT                 PLEVLAPVITHILNFSISHNTFPSLWRIARVIPIPKTKDPKSFSHYRPISI
FT                 LPFLSKVLERIVFQQLNQYLFDNHILSEFQSGFRNGHSTVTTLIKVCDDIR
FT                 LSMDKQNLTVIALLDFSNAFNSVDTDLLVAVLRSINISPEATEWFRSYLCD
FT                 RQQYVQTNDKISSLRSSSMGVPQGGVLSPLLFSIFIDSISQNLSSSYHLYA
FT                 DDLQIYMSTPSSDIDEAIRKFNMDLQNVASWSRSYGLSVNPGKSQVSIIGS
FT                 TKQLKKLNMNDLPTIQFDGTDLSVRPTVKNLGIFLDNSLSWSAQIAEVSRK
FT                 LFANIGGLKRWKYFLPMKTKTTLAHTLLLPILDYADSCYPDLSEEQLNKLE
FT                 RLQNLCIRFIFGLRKYDHVSDYRRQLGWLPIRLRRNYRMLTLLYSILYNPF
FT                 APSYLKERFNFLXSDSLLHLELRSRSDNLLKHPTCYTHFFSNSFTVKAVIL
FT                 WNALPTEVRHSMSLNIFKRRLKQHLFNLENL"
XX
SQ   Sequence 2910 BP; 817 A; 612 C; 445 G; 1016 T; 20 other;
     gctattactt ggggtttttt acagcccttc gctacatata gattattttc acactttgga        60
     gaccttattg gagaaacatg tgccaagcgt tgatcacacc ataattcttg gagactttaa       120
     tacctgtatt attaaaaatg atttacgagc aaaacaactc cttaacatca ttaatagctc       180
     aaatttaaaa ttacttcctt cgaatcctac acattctttt ccgaactgtg ccccatccca       240
     actcgatctt atgattgttt cctccgttga ccatgttatg atccatggtc aacttcctgc       300
     tgacgccttt tcctaccatg atttaatgta tttgtcttat aatgttcgtc cbcctaagcc       360
     caagccatct gtcgtcatgc gacgcagttt taaaaattth aadaatgabg agttcttggt       420
     tgatctcaat gacatcgact ggaacgtcat ttttaacaca acaactatcg atgacaagtt       480
     ggagatattt aattctattt taactgagct ctatgacaag cacgctcctt ttcggccaat       540
     taaattaaaa cacttacccg ctccatggct tacgccagat attaagtcac tgatgactaa       600
     aagaaatgtg gcgaaatcca aatataaaca taatcccacc gatcaaaatc ttttaaggta       660
     taagagcttg cgtaaccgat gtagcagagt ttgcagggac gcgcaamgwa actatattga       720
     cttgagctta caaaacttaa gcccacgtaa gttgtggaaa tttctggavt cgctaggcat       780
     tggccggcaa cgtaaggatt tgaattgcaa tctagacgtt gatgccttga ataaacactt       840
     tgcctcaata acacctatgg acaacacaat taaggcaaat acattgaatt atatcaactc       900
     cttgccgtct cccacaatcg ttccttttaa ctttgcttht attaccccat cccaggtaag       960
     aaacagtatc ctagccatca aatctgatgc ttctggttat gatggcatca accgcaaaat      1020
     gattattttg cccttggaag tcttagctcc agtcattacc catattttaa atttttctat      1080
     ttcccataac acttttccca gtttgtggcg cattgcccgc gttatcccca tacccaaaac      1140
     caaagatcca aaatccttct ctcactaccg tcctatctcc atccttcctt tcttgtcaaa      1200
     ggtcttggaa cgtattgttt ttcagcaact aaatcaatat ctwtttgaca accatatatt      1260
     atccgagttc cagtctggat tccgtaacgg gcatagcaca gtcactactt tgattaaagt      1320
     ttgtgacgat atcagactta gcatggacaa acaaaatctt acagtcattg ctttgctgga      1380
     ctttagcaac gcctttaatt ctgttgatac tgatcthctg gttgctgttc tgcgttcaat      1440
     aaatatctct cctgaagcca ctgagtggtt cagaagctat ttatgtgatc ggcaacaata      1500
     cgtacaaacc aatgacaaaa tatcttccct tcgttcttct tccatgggtg ttcctcaagg      1560
     gggtgttctt tctcctctcc tgttctctat tttcatcgat tctatctccc aaaatctttc      1620
     ctcatcctac catctatatg ctgacgactt acagatttac atgtctacgc cttcaagtga      1680
     tatagatgaa gctattcgta aattcaatat ggatttgcag aatgttgcta gttggagcag      1740
     gtcttatggc ctatctgtta atcctggcaa atcacaggtt agtatcattg gtagtactaa      1800
     gcagttaaaa aaacttaata tgaatgacct tcctactata cagttcgatg gtactgattt      1860
     atctgttaga ccgaccgtta aaaacctygg ratcttttta gacaactcac tatcttggtc      1920
     agcgcagata gctgaggtsa gcagaaaact attcgctaat atcggaggct tgaaaagatg      1980
     gaaatatttt ctacctatga aaaccaaaac tactctagct catacactac tgctaccgat      2040
     tttagattat gctgactctt gttacccgga tttatctgag gagcaattga ataaactaga      2100
     gcggttacaa aatctatgta taagatttat ttttggcctg cgtaaatatg atcatgtctc      2160
     cgattaccgt cgtcagctag gatggcttcc tattagactt cgccgcaatt atcgtatgct      2220
     tactcttctt tattcgatcc tttacaatcc tttcgctccc tcttatttaa aagagcgatt      2280
     caayttcctt gbttccgatt ctcttctaca ccttgaacta aggtcgcgaa gtgataacct      2340
     cctnaaacat ccaacctgct atacccactt cttttccaac tcctttactg tgaaagctgt      2400
     tattctctgg aatgcacttc ctactgaagt gcgacattca atgtcactta acatatttaa      2460
     aagacgtcta aaacaacacc tttttaattt agaaaatttg tagactcttc tatctattaa      2520
     ttatattgta catattatat catatattgt attatattat atgtagcatt tgtttgtata      2580
     agtwtatata tgtttgtatg tatgtattta taaathwatg tatttgtgta ttgtgtatga      2640
     gcttatgtat ttttgtatat atcataagta ttttatgtgt ttacttagta ttattattat      2700
     twttttttag tttgcacata acgttattcc acccttctct ttttatattt taagtccttt      2760
     gctgttatca aaggttgcct gtaagagatt gcttgaagca ataaggccgc ctttgcatac      2820
     ttgttttttt atttcttttc tgttctattt gtattattct ttttctttta tttgtgtgca      2880
     ataaagtata aactaaacta aactaaacta                                       2910
//
ID   L2-12_Hmel  repbase;    DNA;    INV; 3384 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-12_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3384
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2967
FT                 /product="L2-12_Hmel_1p"
FT                 /translation="XLFNCLCNMFVYNASSNSNDDSFCSLSSSSVSSFHST
FT                 SVPLSNLLVDTFSNFPKNFNVLHINAQSVPAHYPDLLASFDCANVHAILIS
FT                 ETFLKPCLPSSSFSIPNFHLIRNDRTGKGGGGVAIYIRNHLPFTIVSKSPS
FT                 QYSETAEHIFIEILLGRLKLLLGVFYSPSLHIDYFHTLETLLEKHVPSVDH
FT                 TIILGDFNTCIIKNDLRAKQLLNIINSSNLKLLPSNPTHFFPNCAPSQLDL
FT                 MIVSSVDHVMIHGQLPADAFSYHDLMYLSYNVRPPKPKPSVVMRRSFKKFN
FT                 NDEFLVDLNDIDWNVIFNTTTIDDKLEIFNSILTELYDKHAPFRPIKLKHL
FT                 PAPWLTPDIKSLMTKRNVAKSKYKHNPTDQNLLRYKSLRNRCSRVCRDAQR
FT                 NYIDLSLQNLSPRKLWKFLESLGIGRQRKDLNCNLDVDALNKHFASITPMD
FT                 NTIKANTLNYINSLPSPTIVPFNFAPITPSQVRNSILAIKSDASGYDGINR
FT                 KMIILPLEVLVPVITHILNFSISHNTFPSLWRIARVIPIPXTKDPKSFSHY
FT                 RPISILPFLSKVLERIVFQQLNQYLFDNHILSEFQSGFRNGHSTXTTLIKV
FT                 CDDIRLSMDKQNLTVIALLDFSNAFNSVDTDLLVAVLRSINISPEATEWFR
FT                 SYLCDRQQYVQANDKSSSLCSLSAGVPQGGVLSPLLFSIFINSVSQNLCSS
FT                 FHLYADDLQIYLAAPFDDVSEAIHKLNEDLRNVSRWSKSFGLTVNPAKSQV
FT                 SIIGGSKQLKKLDQNSLPAIQFGGVDLSLSPSIKNLGIIIDNSLSWSVQIA
FT                 EVSRKLFATIGSLKRWKYFLPIKTKTALAHSLLLPILDYADSCYPDLSEEQ
FT                 LNKLERLQNLCIRFIFGLRKFDHVSDHRRQLGWLPIRHRRNFRMLTLLYSI
FT                 LYNSLSPSYLKDRFCFLGADSLLHLHLRSRCDNLLKLPTSHTLFYSKSFTM
FT                 KSAILWNELPTEVRHSKSLYSFKNRLKEYLFNLV"
XX
SQ   Sequence 3384 BP; 923 A; 740 C; 501 G; 1212 T; 8 other;
     tthttattta attgtttatg taatatgttt gtttataatg cttcatctaa ctcaaacgac        60
     gattcatttt gttctttatc atcttcatct gtaagtagtt ttcatagtac gtccgttcct       120
     ctttccaatc tacttgtcga cacattttcc aattttccca agaatttcaa tgtcctacat       180
     attaatgccc aatccgttcc tgcacattat cctgacttat tagcctcctt tgattgcgcc       240
     aacgtgcacg cgattttaat ttctgaaaca ttccttaaac cctgccttcc ttcctcctcc       300
     ttctctatac ctaacttcca tctcatacgt aatgaccgta caggtaaagg tggtggtggt       360
     gtagccatct atattcgcaa ccacttacct ttcacaattg ttagtaagtc tccatcgcaa       420
     tactctgaaa ctgctgaaca tatttttata gaaattttac ttggtcgatt aaagctatta       480
     cttggggttt tttacagccc ttcgctacat attgattatt ttcacacttt ggagacctta       540
     ttggagaaac atgtgccaag cgttgatcac accataattc ttggagactt taatacctgt       600
     attattaaaa atgatttacg agcaaaacaa ctccttaaca tcattaatag ctcaaattta       660
     aaattacttc cttcgaatcc tacacatttt tttccgaact gtgccccatc ccaactcgat       720
     cttatgattg tttcctccgt tgaccatgtt atgatccatg gtcaacttcc tgctgacgcc       780
     ttttcctacc atgatttaat gtatttgtct tataatgttc gtccccctaa gcccaagcca       840
     tctgtcgtca tgcgacgcag ttttaaaaaa tttaataatg acgagttctt ggttgatctc       900
     aatgacatcg actggaacgt catttttaac acaacaacta tcgatgacaa gttggagata       960
     tttaattcta ttttaactga gctctatgac aagcacgctc cttttcggcc aattaaatta      1020
     aaacacttac ccgctccatg gcttacgcca gatattaagt cactgatgac taaaagaaat      1080
     gtggcgaaat ccaaatataa acataatccc accgatcaga atcttttaag gtataagagc      1140
     ttgcgtaacc gatgtagcag agtttgcagg gacgcgcaac gtaactatat tgacttgagc      1200
     ttacaaaact taagcccacg taagttgtgg aaatttctgg aatcgctagg cattggccgg      1260
     caacgtaagg atttgaattg caatctagac gttgatgcct tgaataaaca ctttgcctcg      1320
     ataacaccta tggacaacac aattaaagca aatacattga attatatcaa ctccttgccg      1380
     tctcccacaa tcgttccttt taactttgct cctataaccc catcccaggt aagaaacagt      1440
     atcctagcca tcaaatctga tgcttctggt tatgatggca tcaaccgcaa aatgattatt      1500
     ttgcccttgg aagtcttagt tccagtcatt acccatattt taaatttttc tatttcccat      1560
     aacacttttc ccagtttgtg gcgcattgcc cgcgttatcc ccatacccaa vaccaaagat      1620
     ccaaaatcct tctctcacta ccgtcctatc tccatccttc ctttcttgtc aaaggtcttg      1680
     gaacgtattg tttttcagca actaaatcaa tatctatttg acaaccatat attatccgag      1740
     ttccagtctg gattccgtaa cgggcatagc acartcacta ctttgattaa agtttgtgac      1800
     gatatcagac ttagcatgga caaacaaaat cttacagtca ttgctttgct ggactttagc      1860
     aacgccttta attctgttga tactgatctc ttggttgctg ttctgcgttc aataaatatc      1920
     tctcctgaag ccactgagtg gttcagaagc tatttatgtg atcggcaaca gtacgttcaa      1980
     gccaatgaca agtcatcttc cctttgctct ctttctgccg gtgttcccca aggtggtgtc      2040
     ctctctcctc tccttttctc catttttatt aattcagttt cccaaaatct atgctcttcc      2100
     tttcatctat atgctgacga ccttcaaatt tacttagccg ccccgtttga tgatgttagt      2160
     gaggctattc ataagcttaa cgaagatttg cggaatgtta gtaggtggag caaatctttt      2220
     ggcttaactg tcaatcctgc caagtcacag gtcagtatta ttggtggctc taagcaacta      2280
     aaaaaacttg accagaatag cctccctgct atacagtttg gcggcgtcga tttgagcctg      2340
     agtccatcta ttaagaacct tggtattatt atagacaatt ccctatcttg gtcagtacag      2400
     atagctgagg ttagccgtaa attatttgcc actatcggat cgctcaaacg atggaaatat      2460
     ttcctaccta taaagaccaa aactgctcta gctcattcac tactgttacc gattttagac      2520
     tatgctgatt cgtgttaccc agacttatct gaggaacaac taaataaact agagcggtta      2580
     caaaatctat gtattagatt tatcttcggt ttacgtaaat ttgatcatgt ttctgatcat      2640
     cgtcgtcagc ttggatggct tcctatccga catcgccgaa atttccgcat gctgactctc      2700
     ctctattcta tcctgtacaa ctctctctct ccctcctact taaaagatcg attttgtttc      2760
     ctaggtgccg attcacttct tcacctccac cttagatccc gttgtgataa tctccttaaa      2820
     ttaccaactt cccataccct attttattct aagtctttta ctatgaaatc tgcaattctt      2880
     tggaatgaac ttcctacaga agttcgacat tccaaatctc tatacagttt taaaaatcgt      2940
     ctaaaagagt acttatttaa tttagtataa tagtttatct ttatttattt ttttttaata      3000
     ttatgtatat atttttgaac acgttttatg tatgtatgta tatatgtgta agtatatatt      3060
     atttttcaat atttgtatgt atgtatgtgt aaagtatata aacattaaac acattttatg      3120
     taagtttatt ttatrttatt gacttagttt attwtatatt atataatatt waattatatt      3180
     tcataaartt tgcactgaga cgttgtcccc tttctcctca ttacaattta tccgttatgt      3240
     ttcaaaggtt gtctggtgga gattgcttaa agcaataaga ccgcctttgc atacgtgttt      3300
     ttctttaaat tttatttrtg ttgttctttc tatatatttc ttttatgtgt gcaataaagt      3360
     atattctatt ctattctatt ctat                                             3384
//
ID   L2-13_Hmel  repbase;    DNA;    INV; 3395 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-13_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3395
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           537..2972
FT                 /product="L2-13_Hmel_1p"
FT                 /translation="XDMFLERTTLSLWVIFNTCLXKXDSRAXRLXNIINSS
FT                 NLNILPTNPTHLFPGCTPSLLDLMIVSSTERLATFGQMSAEAFSYHDLVYL
FT                 SYKIRPPKLKPTVVMRRCFNNIDSEKFMSDLGRINWDCIFSADNVNDKVNI
FT                 FNSLLIELFDTHAPLRPVKIKHLPAPWLTQDIKVLMAKRNSAKSKYKKDPT
FT                 DANLQRYKTLRNXCNKSCRDARRNYIQSSIDYSNPAKTWKFLNGMGIGGRR
FT                 TNNTATLNHCTDLDSLNRFFTTVNLIDNKTKMKTLHSLSLRSSSSTNSFLF
FT                 SPISAAEVRKXVLSIKSDATGSDNISRRMILLTLNXILPTLCHIFNFSLSS
FT                 SDFPDAWRHALVIPVPKXSNPTXFANYRPISILPFLSKVFERIVHXQVYQF
FT                 LHXNNTLTPFQSGFRPGHSTVTALNKVCDDIRYGIDNQXVTXLVLLDFSNA
FT                 FNTVDYDLLLXILKSINVSSKATEWFSSYLHSRKQSIKLEGKLSSVCHISA
FT                 GVPQGSVLSPLLFSIFINTLAPHITSFHHLYADDLQIYTTAAINDISSAVT
FT                 KINSDLQIISTWSKSFGLSINPNKSQVCVFGNSKQLSKXXSPLPPIMXDNV
FT                 CLEVSASVKNLGIRMDSTFXWSPHVSELSRKIFCAIGRLRRWKNLLPLKTK
FT                 ISLAHTLLLPILDYADSCXLDVSQQLLGKLERLQNLIIRFIFGLRKHDHVS
FT                 QYRSQLKWLSIKHRRYLHSLTLLYTVLYHPITPPYLKERFKFLGSDTXHSQ
FT                 PLRSRNNNFLEIPMCRTKCYGDSFTVMTVKLWNELPVEVRRSQSVGIFKRR
FT                 LKQHYLKLNT"
XX
SQ   Sequence 3395 BP; 936 A; 721 C; 551 G; 1112 T; 75 other;
     cgtagttatg catactaatr acartgttag tagtgatagt ataaatagcg acawmyttca        60
     ccagtgcgat tctacagaat ccgattgyag tctccatagc atttctgatc ctctcagytc       120
     cctcctagaa accaaatttr ataatttccc aaaaaatttt aatgttgtcc acatcaatgc       180
     acaaagtrtw ccrgyycatt acccagacat gctcgactca ttcagcttaa aaaatrttca       240
     cgctatmctt rtctcmgaaa cattycttaa gccgwgtttg ccatccacyg catatgctct       300
     gcctggyttt cacctcatac gtaatgaccg kactgaaaar ggcggaggyg gagtagcgat       360
     ytatctgcgy agtmacatcc cyttctcatt actacataag tcaccgtctg wmtactcaaa       420
     ttcttcggag cayatcttra tagaagtcct ctttggmact cttaaagttc tgcttggtgt       480
     yttttayagt cccagcttac acatmaatta ctttgactca cttgaggatc ttttagawag       540
     atatgttcct ggagcggacc actctatcat tatgggtgat ttttaacact tgcttamtca       600
     arratgactc acgtgcagst cggttaraaa atatcattaa cagttccaac ttaaacattc       660
     ttccyacgaa ccctacccac ttrtttcctg gttgtactcc atctctgtta gatcttatga       720
     tcgtctcatc aactgaacgt ctcgcaactt ttggacaaat gtcagcagaa gcattctctt       780
     atcacgatct cgtttatcta tcatataaaa tacgtccgcc taaactaaag ccgacggtgg       840
     tgatgcgcag gtgttttaat aatatagata gtgagaagtt catgagcgat ctcggtcgta       900
     ttaattggga ttgcatattt agtgcggata atgttaatga caaggtaaat atttttaatt       960
     ctcttttgat tgagcttttc gatactcacg caccgctgag gccagtaaaa ataaaacatc      1020
     tccctgcccc ttggttaact caggatatca aggtgctgat ggccaaacgt aattctgcga      1080
     agtctaaata taagaaagac cctactgacg ctaatctgca aaggtacaaa acactgcgga      1140
     acrgatgtaa caagagttgc agagatgccc gacgtaatta tatccagtcg tcaattgact      1200
     acagcaatcc tgcaaaaact tggaaatttc tgaacgggat gggaataggt ggacggcgta      1260
     ctaataatac agctacctta aatcactgca cggatttgga ctccctgaac agattcttta      1320
     ccaccgtcaa tttgatagat aacaaaacta aaatgaaaac ccttcactca ctatcattac      1380
     gttctagttc ttctactaat tccttcctct tctctcctat ctctgcagct gaagtacgta      1440
     agmatgtgyt atcwattaar tctgatgcta cyggatccga taacataagc cgacgtatga      1500
     tcctactaac gctcaactyt attcttccta ccttatgtca tatctttaay ttctctcttt      1560
     cctctagtga ytttcctgat gcttggcgac atgcacttgt tatacctgtt cctaaaayat      1620
     ccaatccaac awctttcgca aactatcgtc ctatttctat actccctttc ctttcgaagg      1680
     tttttgagcg cattgtacat raacaagtgt atcaattcct gcacaawaac aataccctaa      1740
     ctcctttcca gtctggtttc cgtcctgggc atagcacagt cactgcactt aataaagtct      1800
     gtgatgatat tagatacggt attgacaacc agcragtgac tstactcgty ttgttagatt      1860
     tttctaacgc cttcaacaca gttgactacg atttactatt akcaatatta aaatccatta      1920
     acgtctcctc caaagctact gaatggtttt cttcttacct tcacagccgc aaacagagca      1980
     ttaaacttga aggaaaactt tcrtcagtgt gccatatcag cgctggtgtr ccgcagggta      2040
     gtgtactgtc ccccytactt ttttccatat ttattaacac tctcgctcca cacataacgt      2100
     catttcacca cctatatgct gatgatctac aaatttacac gaccgccgcc ataaatgata      2160
     tctctagcgc agtaaccaaa attaattctg atttacaaat aatcagcacc tggagtaaat      2220
     cgtttgggct ttcaattaat ccaaataagt ctcaggtatg cgtgtttggt aactctaagc      2280
     aattatctaa agyamtttct cctctccctc caattatgtt kgacaatgtt tgcttagagg      2340
     ttagtgcgag tgttaagaat ttgggaatca ggatggacag tacatttwcc tggtcgcctc      2400
     atgtctccga gctyagccgc aagatttttt gtgccatagg tagattgaga agatggaaga      2460
     atctsttacc tttaaaaact aaaatatctt tagcccatac tctccttcta cctatactag      2520
     attatgccga ttcatgttrt ttagatgtgt ctcagcaact gcttggtaag cttgagcgcc      2580
     ttcaaaacct tatmataaga tttatytttg gattaagaaa acacgaccat gtgtcacagt      2640
     accgtagtca acttaagtgg ttgtcaataa aacataggcg ctatttgcat tccctcacac      2700
     tcctttatac cgtcctttac catcctatca ctccaccgta cctcaaggaa cgtttcaagt      2760
     ttctagggtc ggacaccbaa cactcccaac ccctccgttc ccgtaataac aacttccttg      2820
     aaatacctat gtgccgcacg aaatgctatg gcgattcctt tactgtgatg acagtaaaac      2880
     tttggaatga gctgccagtg gaagtgagac ggtcccaatc ggttgggata tttaagcggc      2940
     gtcttaagca gcactatctc aagctaaata cctaaactga catttttgct taatcctttt      3000
     atttatttgt atctttattt gttacgtata tatacgtata tttggtgtat ctaagtatgt      3060
     atgtacgtat gtatgtatat atttatgtat ttgtatgtat gcatgtatgt atatatttgt      3120
     atgtatgtat gtatgtatgt tgtgtattta tcngtgtatg tatgtttata tgataaataa      3180
     cgtatttata tttaatagta tcatatttat tattactttt tgcacctttt cgctgtcttt      3240
     tatgtaataa gtcctttcaa atggttgcct gtaagaaatc gcttttagtg ataaggccgc      3300
     cattgcactt tgtattgtct ttctgtaatt attgttactc tactgattct ttgtttattt      3360
     tagtgcaata aagtattatt attattatta ttatt                                 3395
//
ID   L2-14_Hmel  repbase;    DNA;    INV; 4804 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-14_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4804
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1456..4404
FT                 /product="L2-14_Hmel_1p"
FT                 /translation="NTKNMNIDDEFFSCXSSNYDSADSNNSSVSDSDSLVD
FT                 KLSNIFNNPSGXLSLVHINAQSIPAHYTDLLASFXSGVVDCVLVSETWLKP
FT                 SLXSACYSLPGFQLFRNDRTERVGXXXGIYLRNSIPARVVSRSLNQAEGIL
FT                 EYLFLEVELHXKKILLGVLYSPNDKVNYFSALEDIMESLFHHYDHIICMGD
FT                 LNTCMLKNDTRSNQLKALNESYNLHILPMSSPTHFFPXCRPSLIDIISVSN
FT                 PNFIISHGQMTAPFSFHDLIFLSYKLRPPKVRSKIFLQRDFKHIDLERFRD
FT                 DLRNIDWSTTLSLTNIDDMVHSLTSELINIFNVHAPVRPVRIKHAPAPWLT
FT                 PIIKRFMTKRDRAKTKNKRFPCEENLTAYKKLRNICNRMCRDAKRRYVHNT
FT                 IQNLSQAQVWRFLESLGIGKATADHQISVDLNVLNSHFTNPNIKINAHIKT
FT                 HTLASLSQNVLPDSTPFSFKTVSEEEVKKCVRSISTKAIGSDNLSLEMILP
FT                 VLDVIAPVVTHIINFSLTCNVFPSQWKNAYVIPLPKTSNPSAITDYRPISI
FT                 LPILSKVLETIVHNQLYSFLSSNNLLCPYQSGFRPFHSTVSALLNISEDIR
FT                 CALDNTKITAMVLLDFSNAFSSVDFDILLATLRAVNIPSTVLNWFHSYLFG
FT                 RRQCVKANDNTSSWLDLTAGVPQGGVLSPLLFSVFINNISKVISSPYHLYA
FT                 DDLQLYRHGYLHELPETIAXLNEDLAAIQDWAESFGLSVNPKKSQAIIISS
FT                 XRLGSKINWTSVPKILYSGFPIPYYDKVRNLGLTFDSNLTWASHINDLSKR
FT                 MHFSYHSLKRLQYFLPHKTKIMLAQSLLLPILDYADVCYLDVTEELLNKLE
FT                 RLQNLAIRFIYGLRKYDHVSQFRAQLNWLPIRLRRDMHILSLLFKILNYSK
FT                 FPSYLRSRFHLLPTPTRSRRSCVIPTLDIPKSNSKFFQKSFSVYAASLWNQ
FT                 LPKSIQRSPSIMSFKSQLKKYLLAXLNS"
XX
SQ   Sequence 4804 BP; 1367 A; 984 C; 744 G; 1670 T; 39 other;
     ttttttcgcg ggtagattcg caattgcaaa gacgtacttt taagagctct taattttttt        60
     tattaattta tttaatttaa taagcatatg tgttaaaaat ttaaatacct gtgcttaggt       120
     tgactccaac tccactttcc cacataattt tgcacttatt acgaatatgg aagcaccaat       180
     ggaacactta ctcaagagca tggatgaact ctccactatg ttctcttctc gaatggctga       240
     atttgagaag aacctgtctc agccaagttc tgcagcccca aatcccacaa ttaaagcact       300
     gagtgctgat ttctatactt ttaagacttt agtgtggaag tcacttagtc ttttaaagtc       360
     acaaattgag ttggttgcac acggtatgga tcgcttggag acacaatcca gaagaaaggt       420
     gcttttgttc cacggcataa aagaagagaa agatgagaac gtgttaaaga agacaatgga       480
     ggtgttatcc aggtacatga agttgtccga cctttcgcct gtttcgatcg aatcttgcca       540
     tagactaggt gccaagaaag attctgccag gcctgtcctc gttaggtttt gcaatctaaa       600
     ggtacgttcc agcgtgtggc ttgcaaaaac cgctttaaaa ggtaccaaag taaccttgac       660
     ggagttttta acaaaatcgc gccaggacgt ttttgtcgcc gcccgcaatc actttggtat       720
     aaaaaaatgt tggtcagctg atggcatgat agtgatacta ctcaataaca aatccagagt       780
     caagatttct acgttgtcag aactcaaact attaaaacaa caaaatccct caatgaagtc       840
     caccatcaac atttagccgg gtagcttttt ttatwtgtat caatttaact cagccggttt       900
     acayataakt tatwttatat twaaacwctt ttgtaatttt ttcgaccgta agctacattt       960
     tctctctatt ttgtctttgt taaatttcac agttttacag ttcattaccg ktcaatattt      1020
     agtttgttag tttaacttta aaatattrat gtataactgt agcgataaca aattgtttac      1080
     acaataacac atttgacaag tgtcactttg ccgtagaatg taaatagtaa gttaatagat      1140
     aataccataa ataagatata atgttaaaat gaatgattat tgttattgtg ttcttgtatt      1200
     tgttcatgtt cgattgcgtt ccattttgtt ttacatgtgt ttttttttta tatttgtatt      1260
     tctttctttt aattactact ttaatgtgca gattattcca aaagtcaacc tgtgcgcgtg      1320
     gatattatta gttaatttta aaacgttttt atatatatat ttagttgttt ttctttaagt      1380
     atatatatat atttattatt gtwattctat ttattattgt atatttatat atatatttta      1440
     ttwacatatt tataaaatac taaraatatg aatattgatg atgarttctt ttcttgctya      1500
     tctagtaatt atgatagtgc tgacagtaat aactcgtcag tctcagattc agattcgctt      1560
     gtagataagt tatcgaatat ctttaataac ccatccggtt mgctttcctt agtgcatatc      1620
     aacgcacaga gcattccagc tcattatact gatcttctcg catcttttgr ctccggagta      1680
     gtcgattgtg tacttgtatc ggaaacctgg ttaaaaccgt cyctctyatc agcttgytat      1740
     tctcttccag gctttcagtt attccggaat gaccgcactg arcgggttgg tgkakryryk      1800
     ggtatatacc ttcgtaacag catccctgcc agggtcgtct ctcgctccct taatcaggct      1860
     gaaggaattc ttgaatatct ctttttagaa gtagaactac acyataaaaa aattctttta      1920
     ggcgttttat attcccctaa tgataaagtg aattatttta gtgctttgga agatattatg      1980
     gagagtcttt ttcatcatta tgaccatata atttgcatgg gcgacctaaa tacctgtatg      2040
     ttaaaaaatg atactagaag caaccagctc aaggcactga atgagtcata taacttgcat      2100
     attctaccca tgtcttcccc cacycatttt tttcctract gtcgtccttc tctgattgat      2160
     attatctccg tctctaaccc taattttatt atttctcatg gtcaaatgac tgcacctttc      2220
     tcttttcacg atttaatttt tctttcttat aaattacgcc ctcccaaggt tagaagcaaa      2280
     atttttcttc agcgcgattt taagcatatt gatctrgaac gcttcaggga tgatttgagg      2340
     aacatcgact ggtcaaccac attgtcacta actaatattg acgatatggt acactcgcta      2400
     acttctgaac tgattaacat ttttaatgtt catgcccccg taagaccagt tcgtatcaag      2460
     catgcgcctg caccatggtt aacgccaatt attaaacgat ttatgactaa gcgcgatcga      2520
     gcgaaaacta aaaacaaaag atttccttgt gaagaaaatc tcacagcata caagaaactg      2580
     cggaacattt gcaacaggat gtgtagggat gctaagcgtc gctacgttca caataccatt      2640
     cagaacctct ctcaagcgca agtttggaga ttcttagagt cgcttggtat aggtaaagcc      2700
     actgctgatc atcagatctc agtggatctt aatgtcttaa attctcattt tacaaaccca      2760
     aatataaaaa taaatgccca cataaaaaca catacacttg cttctttatc tcaaaatgtc      2820
     ctaccagact caactccctt ttcatttaaa actgtatctg aagaggaagt caagaagtgt      2880
     gtccgctcca tctccactaa agccattgga agtgacaatc tcagtctcga gatgattctt      2940
     cccgtgttgg atgtcattgc accagtggtc acccacatta tcaatttctc gctgacatgt      3000
     aatgtctttc catcacagtg gaagaatgct tatgtcattc cgttacccaa aacctcgaac      3060
     ccttccgcta tcactgacta tcgtcctata tccattttac ctatcctatc aaaagtcctt      3120
     gaaaccatcg ttcataatca actgtactct tttctctcct caaacaatct tctatgtcct      3180
     taccaatccg ggttccgtcc ctttcacagc acagttagcg cactgctgaa tatctcggag      3240
     gacattcggt gtgccttgga taacaccaag atcactgcaa tggtattact ggatttcagc      3300
     aatgctttta gctctgttga ctttgacata cttcttgcta ctcttcgtgc agttaacatt      3360
     ccttccacag ttttaaactg gtttcactct tatctcttcg gtcgccgaca atgtgtgaaa      3420
     gccaatgaca atacatcgtc ttggcttgay ctcactgctg gtgttcctca aggcggcgtt      3480
     ctttctcctc ttctattttc ggtttttatt aacaatattt caaaagtaat ttcttctcct      3540
     taccacctgt atgccgatga tttgcagttg tatcgacatg gctacttaca tgaattgcct      3600
     gagaccatcg cgytcttaaa tgaagatctt gctgcgattc aagactgggc tgaatctttt      3660
     ggcctatcag ttaacccaaa aaaatcgcar gcaattataa taagcagtag magacttggt      3720
     agtaaaatca attggacctc agtgcctaag atactctact ctggatttcc aattccatat      3780
     tacgacaaag tgagaaatct gggtctaacc ttcgacagca acttgacttg ggcatcacat      3840
     attaatgatc ttagtaaacg tatgcacttc tcttatcatt ctctgaagcg tctccaatat      3900
     ttcctccctc ataaaacaaa aattatgctt gcgcaatctc ttctactgcc aattcttgac      3960
     tacgctgacg tctgctattt ggatgtgacc gaggagctac tcaataagct agagcgcctt      4020
     caaaatctcg ccatacgctt catttacggt cttcgtaagt atgatcacgt ttcccaattt      4080
     cgagctcagc ttaattggct yccaattcgc cttcgccgag atatgcacat cctttcactc      4140
     ctttttaaaa tccttaatta ttcaaaattc ccctcttatc ttcgctcccg gtttcattta      4200
     cttcccactc ccacacgctc taggcgttct tgtgtcatac cgacacttga cataccaaag      4260
     agtaactcta aattcttcca aaaatccttt tctgtttatg ccgcatccct atggaaccaa      4320
     cttcctaaat ctatycagag aagtccatct ataatgtcct ttaaatcyca acttaaaaaa      4380
     tatctgctcg cawccttaaa ctcgtaaact tcatattgta attacttcca cattttcatc      4440
     tcatatatct atatatttct tttttatttt tttatatatt tattatataa ctatatgtat      4500
     atatatgtgt atgtatgaaa caatatattt tatatagtat gtatatgtat atcgacatat      4560
     atatttgttt taattatgta tttatatatt gtaatataat atgtgtattt tgttttgttt      4620
     gtgctaagtt aastaaatgt ttaaagtaat aacttaattg tactatgatc tcacccgcta      4680
     cttgtaactc atccacttcc actggttggc tggaagagat ctcttataga gataagtcca      4740
     cctttgcgaa ctaaatgtat tttattgttt tcttatgtat attttgtgca ataaagaata      4800
     ttat                                                                   4804
//
ID   L2-15_Hmel  repbase;    DNA;    INV; 2643 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-15_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2643
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-2643
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2266
FT                 /product="L2-15_Hmel_1p"
FT                 /translation="SLLDLIMVSSPDFVSKHGQCSADLFSYHDLLYLSYKI
FT                 RPPKAKSRILLQRNFGGMDISQLRGDARLXDWSTVTRAKSIDCKVDIFNDL
FT                 IVKLYDHHAPIRPVRLKHLPAPWLNEEIKLLIDKKHKAKTKFKTNGTEANR
FT                 IKYNKARNRCNTSCRDANRRHIHKSIENGDTAKTWKFLESLGVGKSSSNNN
FT                 SYKFDLELLNKHFSSFDAPESVNKVKILNILSSLPTQNFPPFSFRSFTERD
FT                 VNRTILSISSNAVGTDCISRKMILPILDIITPVLXHILNYSTTVNVFPEAW
FT                 KCAQIIPLPKKCNPEHNADYRPISVLPFLSKVLEKLIXXQLNXXINNHSIL
FT                 SPFQSGFRPGHSTTSALIKVTDDIRRAMDRKQLTILVLLDFSNAFNTVDYD
FT                 ILLSLLRSINISPSVIDWFQSYLNGRRQRIRIEEKVSSWCVVQAGVPQGGV
FT                 LSPLLFAIFINSITNXISCPYHMYADDIQIYSHSTLDNLCNSINIINNNLX
FT                 SIADWSKFYGLKVNPIKSQAILIGSPSMIARVNCDYLPSITYNNTVIPYYS
FT                 TVKDLGIHLDQTLSWSVQMTNVSKKILRTLGSLRRLRSVLPIPTKVMLANS
FT                 LLLSILDYADASYPNLTEDYVNKLERLQNLAIRFIFNLRKYDHVSEFRLKL
FT                 KWLPIRCRRNLRILSILYCVLFTHKSPPYLRETFEFLXXHTSRMRSTKNLS
FT                 LRFPTXTSKFYENSFVVRAINLWNDLPLPIRRSKSLRIFKKSVKEYYLKTY
FT                 SXDV"
XX
SQ   Sequence 2643 BP; 791 A; 522 C; 397 G; 913 T; 20 other;
     ttcccttctc gacctcatca tggtctcctc ccctgatttc gtctcaaagc atggccaatg        60
     ttctgccgat ttgttttcgt atcatgattt actttatctc tcttacaaaa ttcgtcctcc       120
     taaagcaaag tcgagaattc ttctgcagcg taactttggt ggaatggata ttagtcaact       180
     gcgcggcgat gcgcgattaw ttgactggtc aaccgtcact agagcaaaat ctattgactg       240
     caaggtagat attttcaatg atttaatagt aaagttatat gatcaccatg ctcctataag       300
     acctgtcaga ttgaaacatt taccagcgcc atggcttaat gaagaaatta aattgctaat       360
     tgacaaaaaa cacaaggcaa aaactaaatt taaaacgaat gggaccgaag cgaaccgtat       420
     taaatataat aaggctagaa atcgctgtaa tacatcttgt agggacgcta accgccgcca       480
     tattcataaa tcaatcgaaa acggcgatac tgcaaaaaca tggaaatttc ttgaatctct       540
     tggagttggt aaatcttctt ctaacaataa ttcttataaa tttgatttag agcttcttaa       600
     taaacatttc tcatctttcg atgcacctga aagtgtcaat aaagtaaaaa tacttaacat       660
     tctttcatcc ttaccaaccc aaaatttccc accgttttct tttcgctcct tcacagaacg       720
     tgatgttaat agaactattc tgtctatctc ttcgaatgct gtcggtactg attgtattag       780
     tcgcaaaatg atcctaccta tcctcgatat tattactcct gtcttgayyc atatccttaa       840
     ctattcyacc actgttaatg tatttccaga agcgtggaaa tgtgcacaaa taattcctct       900
     tccaaaaaaa tgtaatcctg agcataatgc tgattaccgt cccatatctg ttctgccgtt       960
     cctttccaaa gtccttgaaa aacttatcca mmvccaacta aatrcattba taaataatca      1020
     ttccatccta agtcctttcc aatctggttt tcgtccagga catagtacca catctgcgct      1080
     aatcaaagtt acagatgaca ttcgacgagc tatggataga aagcaactca caattctcgt      1140
     acttcttgac tttagcaatg cttttaacac cgtcgattac gacattttgt tgagtttgtt      1200
     gcgttctatt aatatatctc cgtctgtgat tgactggttt caaagttacc ttaatggccg      1260
     tagacagcgc attcgcattg aggagaaggt ctcttcatgg tgtgttgtcc aggctggggt      1320
     acctcaaggc ggtgttttat ctccattact cttcgcaatt ttcattaatt ctattactaa      1380
     tmgtatttcg tgtccctatc acatgtatgc agatgatatc caaatttata gycattctac      1440
     tctagataat ttgtgyaatt caattaatat tattaacaat aatctsmttt caattgcgga      1500
     ctggagtaag ttttatggcc ttaaggttaa ycccataaaa tcgcaagcaa tattaatagg      1560
     aagccctagc atgattgcac gggttaactg tgattatctg ccatcgataa cctacaataa      1620
     cactgttatc ccatattaca gtacagtcaa agatcttgga attcatctag accaaacact      1680
     ttcatggtcc gtacagatga caaatgtaag caaaaaaatt ctccgtacct taggctctct      1740
     ccgacgtctt cgttctgttt tacctattcc caccaaagtt atgttagcaa attctcttct      1800
     tctctcaatt ctcgactatg cggacgcaag ctatcctaac ttaaccgaag actatgtaaa      1860
     caaacttgaa cgacttcaaa atcttgctat tcggttcata tttaacttac gcaagtatga      1920
     ccatgtttcc gaatttcgtt tgaagctcaa gtggctccct attcgttgtc gccggaatct      1980
     acgtatactt tcaattctgt actgtgtgtt atttacccat aagtcaccgc cttatttaag      2040
     ggaaactttt gaatttttad gddcgcatac aagtaggatg agatctacta agaatctctc      2100
     tttaagattc cctacttvca caagtaagtt ttatgagaac tcgttcgtgg tacgagcgat      2160
     aaatctttgg aacgacttgc cacttcctat tagacgttcc aaatctttac gtatatttaa      2220
     aaaatctgtt aaagaatatt atcttaagac ctattctwaa gacgtttgat tattctattt      2280
     acttaatata tattttgtta ttatatgaca tcaatatata ttatatatgt atattattat      2340
     gtattagtct attatattac tttatatatt gtactatttt ataaatattt gtgtattaag      2400
     tttatgtatt aggataaaat attatttacg tatgtttatt tatttgcacc acccactatt      2460
     tgttttaaat tttatgtctc ctaacctcaa ggttgtctgg aagaaatcgc taattagcga      2520
     taagaccgcc tttgtacttc acactttgtt attagcttat aagtactaga tgtagtttgt      2580
     aactttgttt tcttctgttt gtggtgtaca ataaagtata aataaataaa taaataaata      2640
     aat                                                                    2643
//
ID   L2-1_BM     repbase;    DNA;    INV; 3514 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   03-OCT-2013 (Rel. 18.10, Last updated, Version 2)
XX
DE   Kiri non-LTR retrotransposons from silkworm.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2-1_BM.
XX
NM   L2-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3514
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1047-1047 (2010).
XX
RN   [2]
RP   1-3514
RA   Jurka J.;
RT   "Re-classified as Kiri.";
RL   Direct Submission to Repbase Update (02-OCT-2013).
XX
DR   [1] (Consensus)
XX
CC   L2 type non-LTR retrotransposons (more recently re-classified as
CC   Kiri), which 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           257..3202
FT                 /product="L2-1_BM_1p"
FT                 /translation="MTDMLNCSDSSDYLSITSSSSGSEDSFLSIPSLAETL
FT                 DSNFSDVPRNLNVVHINAQSIPAHFSDMLVSFDIKNIHAVLVSESWLKPSL
FT                 PSISYSLPGFNLIRNDRIGKGGGGVAIYLRSHIPYTIVSASDQSPLPNVSE
FT                 HLFIEVGLTHAKILLGVFYSPSLHINYFSSFEKVLEDLLPCYEHTIIMGDF
FT                 NTCLLKRDHRSSSLESIVTSSNMHILPLSATHHFPNSSPSLLDLILVSSLE
FT                 HVARHGQCSADSFSYHHLIFLSYKIRPPKRKPTVILQRNFGRMDMDAFVAD
FT                 AKTVDWEPVMAASSIDDQVAIFNSLMIXLYDIHAPLRAIKIKHQPAPWITD
FT                 HIRDLKRRKSAAKTKYKLRPTEFNRTRYVKIRNRCNMVCRDAQRRHIHDSV
FT                 KVEDPAKVWKFLRSLGVGKSRQECNSTNINIDQMNIFFTSSSLLDDVVKSS
FT                 TINSLSNITAPDHSSFKFRQFTACDVRRSILSIASNAIGTDSISRNMVIPL
FT                 VDILLPILCHILNXSISNCVFPSVWKEAQIIPLPKKPNPKSFSDYRPISIL
FT                 PFLSKVLERLIHNQLSSFLNSHDLLNPFQSGFRPGHSTVTALVKITDDIRL
FT                 GMENGQLTVLTLLDFSNAFNTVDFDILLAVLRSFNISPTVIEWFRNYLYGR
FT                 RQCVRLGESISSWCNTSAGVPQGGVLSPLLFSLFINSISCNLTSSYHLYAD
FT                 DLQLYCQAPLPQLHDAIRTMNSDLRVLSEWSNAYGLKLNPTKTQCIIVGSQ
FT                 RTCSKIEWTHLPQLSLDGINIPFSDTVKNLGVIIDRSLSWGPQLVSVSRKL
FT                 FSSAGSLRRLRNFLPTSTKIALAQSLLLPIIDYADASYLDLTEAQLNKLER
FT                 LQNFIIRFIFGLRKYDHVSEYRVKLKWLPIRYRRNVHILSLLYSVLFNSSS
FT                 PRYLQERFDFLHTASSHSLRSSENLMLKFPAHGTSFYDHSFAVEAVRLWNA
FT                 LPLSVKQSSSPEIFKSRLKSHYFASMI"
XX
SQ   Sequence 3514 BP; 900 A; 762 C; 617 G; 1232 T; 3 other;
     ttattctaca tcagttcgta atttacaatt gcacttcatg ttgtatttgg caaatgcaat        60
     gcacatggta aaatttgttt ctgtcttgtt taagttttaa tttttaagtt ttctcttcgt       120
     atcagacgcc ggcaggttga gtgaatgtat ttattttttg tttattatta ttgtttatat       180
     atatatatat atatattatt gttagtgtta tatatatttt tgttacttat ttgtgtttat       240
     aataggtatt atctttatga ctgatatgtt gaattgtagt gatagtagtg actatttatc       300
     tattacttca tccagtagcg gaagtgaaga tagcttcttg agtatccctt ccctcgcaga       360
     aacgttggac tctaatttct ccgatgtgcc taggaatctg aatgtagttc acataaatgc       420
     gcagagcatt ccggctcatt tctctgatat gctggtatct tttgatataa aaaacatcca       480
     tgctgtatta gtctccgagt cttggcttaa accgtctctt ccttctatct cgtattcttt       540
     acccggcttc aacctaattc gcaatgatag aatcggcaaa ggcggcggtg gtgttgccat       600
     atatctacgc tcccatatac catatactat cgttagcgcc tccgaccaat cacccttgcc       660
     gaatgtcagc gagcacttgt tcattgaagt cggtctaaca catgctaaaa tcttacttgg       720
     agtcttttat agcccatctc ttcacattaa ttatttttct tcttttgaaa aggtcttgga       780
     agacctactt ccttgctatg agcacaccat aattatgggt gacttcaata cctgccttct       840
     taaacgtgat catcgttctt cttccttaga aagcattgtc acgtcgagca acatgcacat       900
     tctcccactt agcgctaccc accattttcc aaattcttcc ccatccctgc ttgatctcat       960
     cttagtttct tccctagagc atgttgccag gcacggacaa tgctcagctg actctttttc      1020
     ctaccatcat ctgattttct tatcctacaa aattcggcct cctaaacgta aacctaccgt      1080
     tattctgcaa cgcaattttg gtagaatgga catggatgca tttgttgcgg atgccaaaac      1140
     tgtagattgg gagcctgtga tggcggctag ctcaatcgat gaccaagtgg caatatttaa      1200
     ttcactaatg atcmgtttat atgacatcca tgctccctta agggcgataa aaattaaaca      1260
     tcagccggcg ccttggatca ctgaccatat tagagatctg aagaggagga agtctgcggc      1320
     taagactaag tataagttgc gcccaaccga gtttaaccga acacgttatg ttaagatcag      1380
     aaatcgttgc aatatggtgt gtagagacgc tcaaagacgt cacattcatg attccgttaa      1440
     agttgaagat ccagcaaaag tctggaaatt tctaaggtca ttaggagttg gtaaatctcg      1500
     tcaagagtgt aattctacaa acattaacat tgatcagatg aacattttct ttacttcttc      1560
     gtctttatta gatgacgttg ttaagtcatc taccattaat tctctttcta acattaccgc      1620
     tcctgaccat tcttctttta aatttcgtca attcacagct tgtgatgttc gaaggagtat      1680
     cctttctata gcgtccaatg ctatcggaac agatagtata agtcgtaata tggtcatccc      1740
     attagttgat atcctgcttc ctattctttg ccacatmctt aattwttcaa tttccaactg      1800
     tgtgtttcct tctgtttgga aagaagcaca gataatacct ctgccaaaaa aacctaaccc      1860
     taaatccttt tccgactatc gacctatatc cattcttcct ttcctatcta aagtcctcga      1920
     acgccttatc cataaccagt tgagttcgtt ccttaatagt catgatctcc tgaacccctt      1980
     tcagtccggt tttcgtcctg gccatagtac agtcactgct ctggtaaaaa tcaccgacga      2040
     catacgcctg ggtatggaaa acggtcagtt aactgtgttg acactgctgg acttcagcaa      2100
     tgcattcaat acggttgatt ttgacatact acttgccgtt cttcgctcct tcaacatatc      2160
     tccaactgtg attgaatggt ttcgtaatta cctgtacgga cgccgacagt gtgttcgcct      2220
     tggtgaatcg atttcatctt ggtgtaatac atctgccgga gtgcctcagg gtggcgtttt      2280
     atctcctctt ttgttttctc ttttcattaa ttcaatatct tgtaatctca cttcgtccta      2340
     ccacctttat gcagacgatc ttcagctgta ttgtcaagct ccacttcctc agttacatga      2400
     tgctattcga actatgaata gcgacttacg cgtcttatct gagtggagta acgcgtacgg      2460
     cctcaaactg aatccaacaa aaacgcagtg tataattgtt ggcagccaaa ggacatgcag      2520
     taagatagag tggacacatc tgccccaatt gtctcttgac gggataaaca tcccgtttag      2580
     tgacaccgtt aaaaatcttg gtgttatcat tgaccgcagt ttgtcatggg gaccacaact      2640
     ggtgtcagtc agtcgcaaac tattttcctc tgcgggttcc ttacgtaggt tgcgtaattt      2700
     tcttccaaca tctactaaaa ttgcacttgc acagtctctg ttactcccca ttattgatta      2760
     tgccgacgcc agctatcttg atctaaccga ggcccagcta aataaacttg agcggcttca      2820
     aaattttatc ataaggttta tatttggttt acgcaaatat gaccacgtct ctgagtatcg      2880
     agttaagctc aagtggcttc ctattcgtta tcgccggaat gttcatatat tgtctcttct      2940
     ttacagtgtc ctgtttaatt cctcgtcccc gcgctacctt caggaacgtt ttgatttcct      3000
     acatactgca agctctcatt cactcaggtc atcggagaat ttaatgctga agtttccggc      3060
     tcacgggacg tcattttatg accattcctt tgcggttgaa gctgtccgtt tatggaatgc      3120
     gttaccctta agcgttaaac aatcgtcctc gccggaaatt ttcaagtcca gattgaaatc      3180
     gcactacttt gcttctatga tataactgta taagttccta cttcttttgt attttatctt      3240
     gtatattttt agtatttatt tgtatttaat cgtatgtaag tttatcttat atggtattta      3300
     tttttcacat gtgtatttaa gtatatattt ttatgtaagt ttattaagat atagcaccgt      3360
     ccagttaact tattcctctc cctgcaaggt tgcctggaag agatcgcttt cagcgataag      3420
     gccgccgatt tatataccga cttttgtttt attactttac tgtgtacata ttaaggtgtt      3480
     atataaataa agagttatta ttattattat tata                                  3514
//
ID   L2-1_Hmel   repbase;    DNA;    INV; 3314 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3314
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2921
FT                 /product="L2-1_Hmel_1p"
FT                 /translation="EYFSCSSSXYDSADSDVXXDSEPLXDKLSKIFINNCS
FT                 XXLSLVXINAQSIPAHYTDLLASFSSGVVDCILISETWLKPSLSSXXYSXP
FT                 GYQLFRNDRTGRGGGGVGIYLRDHIPASVVSCSXPHPNGSLEYLFLELTLR
FT                 HTKVLVGVLYSPNDQINYFSTLDGILENLRPQYEHXICMGDLNTCLLKNDR
FT                 RTHLLKXXNXSYNLXLLPMSSPTHYFPNCRPSLXDLISVSNPTFVTSYGQM
FT                 XAPFSFHDLIYLSYKLRPPRVKGKIHFQRNFRHMDVERLKDDLRNINWSPI
FT                 LSSNNIDFMVESLTTELINIYNIYAPVRPVRMKHAPAPWLTQVIRNAMTKR
FT                 DRAKAKNKKCPSQENLSAYKKLRNICNRLCRDAKRRYIHKTIQNLCQAQVW
FT                 RFLESFGVGKNIDTHQLSVNLQTLNKFFATPPVNINPQLKSKTLAFLSNIV
FT                 PPDSVSFSFKAVTEDDVKKYVHSISSKAFGCDNLSLEMILPVLESIAPVVT
FT                 HIFNFSLSRNVFPSQWKSAFVIPLPKISNASNVTDYRPISILPVLSKVLES
FT                 LVNNQLYSFLSSNNLLCPFQSGFRPSHSTVGALLNITEDIRCAMDNTKLTV
FT                 MVLLDFSSAFNSVDLDILLGTLRAVNVSFEAVSWFRSYLFGRRQCIKANDT
FT                 TSSWLDLTAGVPQGGVLSPLLFSIFINNISGVITSPFHLYADDLQLYRHCS
FT                 LNDLPAAIEGLNSDLSAIQTWADSFGLXINPKKSQAIVIGSSRLRSKINWY
FT                 LVPAIQYSGVTIPFCENVRNLGLIMDSNLTWAPHINSISKRMHFSYHTLRR
FT                 LQYFLPHKTKIMLAQCLLLPILDYADVCYLDVTEELLNKLERLQNLAIRFV
FT                 YGLRKYDHVSHFRAQLNWLPIRLRRDMHILIFLFKILNYMNYPVYLRSRFN
FT                 LLPCPSRSRRSYVIPMLDVPKSNTKFLQKSFTVYAASLWNQLPNPIQKSHS
FT                 LNSFKSXLKXHLLKSESN"
XX
SQ   Sequence 3314 BP; 853 A; 736 C; 522 G; 1115 T; 88 other;
     atgaatactt ttcttgttct tctagcrttt atgatagygc agacagtgat gthavttbtg        60
     attctgaacc acttthtgac aagctgtcda aaatttttat caataattgt tcthcadccc       120
     tgtccctggt ksatathaac gcgcagagta ttccdgctca ctataccgat cttctcgcat       180
     cctttagctc cggcgtagtt gattgtatac ttatttctga gacctggcta aaaccatcgc       240
     tttcntctkc ttsctattcy ytdccdggbt atcagctatt tcgcaatgat cgcactgghc       300
     gtggtggtgg tggcgttggt atttaccttc gcgaccacat hcccgctagt gtngtctctt       360
     gctctbctcc tcatcctaat ggntctctag aatatctttt tctagagttg acvttgcgtc       420
     atachaaagt acttgtcgga gtcctgtact ccccgaatga ccaaatcaat tattttagca       480
     ctttggacgg tattcttgag aacctccgac ctcaatatga acatatvatt tgcatgggcg       540
     atttaaatac btgcctttta aaaaatgatc gtagaactca tttattaaag gmdhtaaayg       600
     aktcmtataa tttaywccty ytacctatgt cttcycctac ycattayttt cctaaytgya       660
     grccttcyct tmttgatctt atttctgtct ctaaccccac tttcgtcact tcttatggcc       720
     aaatgwcygc hcctttttcc tttcatgatc taatctatct ttcctataaa ctacgcccac       780
     ctagrgttaa aggcaaaatc cattttcagc gcaattttag gcatatggac gttgaacgcc       840
     taaaggatga tttgaggaac atcaactggt ctcccatatt gtchtcaaac aatattgact       900
     ttatggtgga atcattaact acygaactga ttaatattta caacatctat gcccctgtaa       960
     gaccggttcg aatgaagcat gcgcctgchc cctggttaac acaagttatt aggaacgcta      1020
     tgaccaaacg tgatagggcc aaggctaaaa acaaaaaatg tccatcgcaa gaaaacctaa      1080
     gtgcgtataa gaagttgaga aacatctgca acaggctgtg tagggatgcc aaacgtcgct      1140
     acatccataa aactattcag aatctttgtc aagcacaagt ttggagattc ttggagtcgt      1200
     ttggtgtggg caaaaacatt gatactcatc aactctcagt aaatcttcag actctcaata      1260
     aattttttgc aactccacca gttaatataa atccccagtt aaaatctaaa acacttgctt      1320
     ttttgtctaa tattgtccca cctgactcag tttccttttc tttcaaagct gtaacagaag      1380
     atgatgtcaa gaagtatgtt cactctattt cctctaaagc cttcggatgt gacaatctca      1440
     gtcttgagat gattcttccc gtgttggaga gcattgcacc agtggtcacc cacattttta      1500
     acttttcact gtctcgcaat gtctttcctt cacagtggaa gagtgctttt gtcattccac      1560
     ttccgaaaat ctctaacgct tccaatgtca ctgattaccg tcctatatct atccttcctg      1620
     ttctctctaa agttcttgaa tccttagtca acaaccaact ttactctttc ctctcatcca      1680
     acaatctttt atgtcctttt cagtccggct tccgtccttc tcacagcaca gtnggagcac      1740
     tgttgaacat tacggaggac attcggtgtg ccatggacaa taccaaactc actgtcatgg      1800
     ttctgctgga tttcagcagt gctttcaact ctgttgacct cgatatactt cttggcactc      1860
     ttcgggcagt caatgtttcc ttcgaagctg taagctggtt tcgttcttac ctcttcggac      1920
     gccggcaatg tataaaagca aacgatacca cgtcgtcatg gcttgatctc actgccggcg      1980
     ttccccaagg cggcgttctt tccccacttc ttttctctat ttttattaac aacatctctg      2040
     gagtcattac ttctcccttc catctgtatg cggatgattt gcaactttat cgtcactgta      2100
     gcttaaatga tctgcctgca gctattgaag gtttaaatag cgatctgtct gctatacaaa      2160
     cttgggctga ttctttcggc ttattnatca atccaaaaaa atcccaggca attgtgatag      2220
     gtagtagcag actcagatct aaaatcaact ggtatctcgt ccctgcgatt caatactcag      2280
     gagttacaat tcctttttgc gaaaatgtta gaaatttagg gcttataatg gattctaacc      2340
     tcacctgggc accccatatt aattcaatca gcaagcgcat gcatttctct tatcatactc      2400
     ttaggcgtct ccaatacttc cttcctcaca aaaccaaaat tatgctagcg caatgtcttc      2460
     tgcttccaat actcgactat gccgatgttt gctatttgga tgtgaccgag gagctactta      2520
     acaaattaga gcgtcttcaa aatctggcca tacgctttgt ttacggcttg cgtaagtatg      2580
     accatgtctc ccattttcga gctcagctta attggctccc aattcgcctt cgccgtgata      2640
     tgcacatcct tatattcctt tttaaaatcc tgaattacat gaattatcct gtttacctgc      2700
     gctcccgctt taatctgctt ccctgtccct cacgctctag gcgttcgtat gtcattccga      2760
     tgttggacgt accgaagagc aataccaaat tccttcaaaa atcctttact gtatatgccg      2820
     catccctttg gaaccaactt cccaatccta ttcagaaaag ccattcccta aactcattta      2880
     aatccmaact taaaaadcat ttgcttaaaa gtgaaagtaa ttagacatag ctttaatcag      2940
     tgtttctagt atatattata tatatgtwta wayrtatrta tgtatgggta tatattatgt      3000
     atgtattata tatgtatgta tatgtatata tagtcgattt aahwrtryaw ataattatat      3060
     atttataaht tgtrtadrta tatatdtrta ttgtagyatg tattatdtwt ataatgbrtt      3120
     agttaatata tatattttty ttthtdatht ttttttnttg attgcactgt gttsttattc      3180
     cgctgtttgg cactcatcca cttccatagg ttggctggaa gagatttctt tcagaaataa      3240
     gcccgccatt gtaaacatat ctttttaact gttttcttac tdttttctta catgtgcaat      3300
     aaagaatata tata                                                        3314
//
ID   L2-1_HSal   repbase;    DNA;    INV; 4447 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 19.04, Created)
DT   27-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   L2-type non-LTR retrotransposon from the Harpegnathos saltator
DE   genome.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4447
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Harpegnathos saltator
RT   genome.";
RL   Repbase Reports 14(4), 1044-1044 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 4447 BP; 1757 A; 530 C; 1029 G; 1131 T; 0 other;
     ctggtgatta ctgggagtaa tatctacccg ggacgtgcta atttgcgggc gtagaaccta        60
     aatctatttc ttggaatctt cgggttcgcc tgataggcga acataaggct gttgacatgt       120
     gagccgcggt atgcgtgaac tctgtgttga catgtgaatc ccgatatgcg tggactttgt       180
     gttgacagta cagctaagaa gcggttctaa tgtcgataat agaagaacag tatcctgaat       240
     ataaatgcgc tgtgtataaa aaggaaataa aaagtaatgt tagtaggtgt aagaactgta       300
     ataaaatatt tcttcatccg agatgtgtgt ccaagcataa aatgtataac aagaataatg       360
     aactgatacc attggtccgt atgaaaaatt ttcagtggat ggtgatataa atgcagatat       420
     gaagaaagct ccaaccatgt caaggaagag gagcgatagg ctaagttcaa caggatctaa       480
     tggatcattg gaacctactg cagaggggca gaaatcatcc ggtattgatt taaaaattga       540
     ctggattgtt aaagcaatca aggagatgag agatgagata gcttgtaaaa aggaaatcaa       600
     attgatgatt aaggaggtag tacaagaaga aataggctat tacagacaag agttgaaaga       660
     actgaagcaa aaaaatcaag aaggaatagt tgaccaaata aatggagctg gaggttcaac       720
     ccaaaggagc tactgcagtg tggtgaagga gaggaagaaa gaaaacatcc taattgtcaa       780
     acccaaggtg gaacaggaaa gtgaagttac caaaaagttg gtaaaagaaa aagtaaacat       840
     caagaatatg gcaatgggaa taacgaagtt aagaaaagga ggtaaaggta taattgtact       900
     gggttgtgaa actggagaag agatggaaaa gctgaagact acagtacagg cccagctggg       960
     agaaaacttc caagttattg agccacagaa aaggaaaccc aaggttaaaa tagtttgtat      1020
     tagtggagat gaattgaaat gggatgataa cctaataaat atataataaa taattaagaa      1080
     gcaaaatagt attactgatg acatacgagt agtaaagcga atagttaatg gaaaaccaga      1140
     aaaaatagaa aagggagatg gctcgataat aatcgaggca gacgaacaga cccataaagt      1200
     tatgctaaga agaaagaaga tgaatctggg atggagaaaa tgcttggtgt ttaattacgt      1260
     cagtgtgaag agatgcttca aatgctgagg ttattatcat atggcaaaga attgtacacg      1320
     agaggaaaca tgctgtaaat gcgctggaaa ccataaggcg aaagaatgca aggcacaaaa      1380
     gatgaaatgt ataaattgta tgcataagaa tcaaacgtac aacttgaaga tcaatgaggg      1440
     acacaatgca ctggacccag aatgcccgac attcaagaga gcattaggag aagaaaagaa      1500
     gagaattggc tgggatgaat agcaactaca gatgaagtta gaagcaatat ggtatacaaa      1560
     tgcgcaaagc ttgatggcac ataaagacga gatacaacag cagatcatga agaagataaa      1620
     tcctgcgttt ttggcgttgt cggagtctag attgactgat gaaattgaag ataatgaggt      1680
     aaatgtacca ggatatagtt tagttagatg tgatgctgag aataaacata taataaacat      1740
     acgggaggag ttattctata tgtcagacat gatattaagc atgaagtgat attgaatgaa      1800
     aagataatct cgaattgttg gtgtgcagcg ataaaagtta aagcaaaagt atataaaggt      1860
     gtgataatgg taatctatcg ttctccgagt tcatcggaga gtgaattttt gagtttttta      1920
     gaagacaaaa ttgagcagtt gatcataaaa gaacattgta tagtaatagg agattttaat      1980
     ataaatgtaa tgggaaactc attttatgca aaaagataca gacgataatt cgaggtttgg      2040
     gtatgaaaca atatgtaaat aagccgacaa gaatcacaaa agatagtcag acaattatag      2100
     atttagttct tgccaatggc gaagtaaagg tgcaagtgaa ggataggcct aaaataacgg      2160
     atcatgcgtg gttgcaagtt gaacttggct cgagtaggtc ggaaaagaaa tacagagaat      2220
     ttagtggtag agactacagt aaatttaata gtagcgaatt tcttagacta ctagaattaa      2280
     aaataataca gggacaaggt ttatgtgtga acacaagagc tgaaaaattt attggcagta      2340
     tagtagatac actaaatatt gtagccccta ggaaaatatt taaaattcca aaagtatggg      2400
     atgggaaaag tggttttcag acgaaataag aatagcggca acaaggaggg atgaggccta      2460
     ttgtaaggca atatatacta atgcagaaca tgattggtta cagtttaaaa ttgaaagaaa      2520
     tgtagttgtt aagcttatta aggttaaaaa gaaagaatat tatgaaaata tgataaatca      2580
     taacaaaaat gatcccaaaa caatgtggaa aaccttaaaa gaagtaatta gaggcgagtc      2640
     aatggaacca aaagtcatag acaatttgga tttcgaggta ctaaaaagcg taaatgagtg      2700
     caatatagct aataaattta atttatttta tgtattaagc attgagaaca tagtaaaatc      2760
     tgtaaaagag aagagggaag cagatagaaa aagtatatgt ttaattgaaa ctaaagacac      2820
     tatagaaaac tttgaaatga ttggggcaag aaatttagag gaaattatta tggcattacc      2880
     taataagaaa gggacagaag agggaataac aagtgagata ctaaaattag cattccatgt      2940
     gataaaagat gagtttgtag aaatcataaa tgattctttg agaatcggtc aatgtccaga      3000
     tggatggaaa acgtcgatga taataccgat acctaaagtt gggaaaccaa ggatagctag      3060
     tgaatataga ccgattaaca tcctaccgat atacgaaaaa gtattagaat tagtagtaaa      3120
     agaacagata gaagcgtatt tagaaaacaa caacattatt tcggaacacc agtcggggtt      3180
     taggaaacaa cactcgtgtg aaacagcgat gcaggtgatc attgacgatt ggaaactaat      3240
     aatagtcagt gagggaaaaa tgattggagt gatatttatg gatcttaagt gagcgttcga      3300
     gatcgtaatt agggaaatat taatagaaaa tttatatcta tacgggataa gaggaactgt      3360
     attaaaatgg ctataatcgt atttaagtaa tagaatgcag caagttcaat ttggtgatat      3420
     atggtccaac ctgattgata ctaaatatga ggtacctcaa ggatctgtat taggaccctt      3480
     attgtttatt atatacataa atgatgtaat taaaagttgc ccagaggaat gtaatataaa      3540
     aatgtttgca gacgacacga tattatatgt agccggagta agttgcaagg atttggaaaa      3600
     gaaaatgaat atgatgtttg ctggagtaga agaatggatg aacataaata aattaaaatt      3660
     gaatgcaagt aagacaaaat atatgatagt tagaagcata agaaaagaac tgaaagcaaa      3720
     cattgtattg agatgcatgg atggaacacc aattgaacgt gtaaaaaaaa tgaagtatct      3780
     cggtgtaatc atcaatagta agttaagatt agatgaacac tgtgattata tgcttaagaa      3840
     aatagggaaa aaaacgagtt ttttaaatag aataggtgac agtataacgg catacactag      3900
     atgtattgta tataaatcga tgattgcacc tcatttcgaa tattgtgcga ccttattaat      3960
     tgatatgggc gagacatagt tgaataagct gcaagtagcg cagaaccggg ctgcaagggt      4020
     catactgcaa tgcgctcggc ataccaaggt gaaacaaatg ataaatgcgg tgcagtttat      4080
     gactgtgaga cagaggatat actatagagt atatattttt atttttaaaa taatcaatgg      4140
     tgtttcgtct aaccagctaa gaaataggat agagatagta ggacaggtca gtggaaaaca      4200
     tacgagacaa gctggagaca ttgtgatgca atttcgtagc acaagaagtg cacaaaaaag      4260
     tatgttctat gaaggagtga ggatgtataa cgccttgccg acagaattaa agcaaagtgc      4320
     taggattgat gcgtttaaac gaatgttaaa ggaatatatt gcagctggtg tgatgggatt      4380
     ataaggtaac tgatgtaaca aatagctgag aaatctaaat aaagatctca tcatcatcat      4440
     ctctccc                                                                4447
//
ID   L2-1_NVi    repbase;    DNA;    INV; 3238 BP.
XX
AC   .
XX
DT   15-FEB-2009 (Rel. 14.02, Created)
DT   15-FEB-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3238
RA   Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(2), 478-478 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           491..2803
FT                 /product="L2-1_NVi_1p"
FT                 /translation="MIRLFLSTRSPFHVIAVTETWLXDKITSIPSLDDYXL
FT                 YRRDRNRNGGGVALYIHKSLTVSVISSSDGEWSGKPGKPEYLFCEVSAKGV
FT                 SPIFVGVVYRPPHAPFFQGSNFIDQLTTHMHNYSTKVIMGDFNSDQLSSSE
FT                 DANFIRAFIDENSLSSVPYGATHHKQGSDTWLDLCLIDEQDRLLSRWKTDT
FT                 PFINGHDLITATLDVQIPRYVPNTYSYRNYKGISAEKLRDFLSACDWSSLT
FT                 TSSLDECISILNANLTNAINHLAPLRTVTPRRKRHPWFTTALRDLVSERDG
FT                 LYRRFRDSRLDSDLRXYRLARDDAHRQVEEARLNYYYSRLSTLTDVAEIWR
FT                 ELEKLGISASKAPSPSRFSTDELNKHFSSISNDPPAPAVEDYLLTLESLDL
FT                 PEHFKFSTITESDVLAAVSHFDTQARGSDGIPQVVISKALPVLAPLLCQIF
FT                 NLSLSESRFPSAWKLSLVRALNKVSSPTALTDYRPISLLCFLSKALEWLVH
FT                 RQVSEYLESRLFLDNXQTGFRTGHSTQSGLIKLTDDVRVGINKKKVTLLLF
FT                 DFSKAFDTVCHVRLLRKLSXFGFSKQVIRWFASYLTGREQAVVGDNSERSS
FT                 SRPLNIGVPQGSVLGPLLFALYINDIGFCLDSDVSHLIYADDLQIYSQCHL
FT                 EELDSXSNKMSANAERIMGWAAQNRLKLNVIKTKAIVLGSPYYINALPSVA
FT                 NTFINIGGARVNXESSVRNLGLVLDSKLTWKEHVTQXCKRAHSLMYRLYFF
FT                 RKSTNLRLRKHLVQALLFQ*"
XX
SQ   Sequence 3238 BP; 826 A; 898 C; 692 G; 793 T; 29 other;
     gtgacggcag accgccacca ytagccgtca ccctctcttc aagtgcgctt gcacgctcga        60
     tcgtcgtcgc caaagcccgg aaacgcaagc tcaccarcga aytggacgct accttgctgg       120
     aggaggcaaa agctctgagc cctgaccatc aagggctcat aaacatcaac gagctgcttc       180
     cttcagacgt ccacaagctg cgtacaargg ctaggctgga ggccaagaag aggcagggct       240
     gccgaacttt cgtsagagac gggagactat acatgcgctg cgacgatgac agcgagcgca       300
     ccgacgccga gctggagact tttttagccc ggattccgcc agctgccaac atcatccaac       360
     aagctaacac acacacacgt cattccacca caaccaccat caarctcatc cgccacgtct       420
     tcatctatct ctgtccgaag gtctaagagt ctgtcatttc aatgcgaact ctcttacggg       480
     tcacattgag atgatcaggc ttttcttgtc cactcgctct ccatttcacg taatagctgt       540
     aactgagacc tggctaarcg acaagataac atccatccct tcactggatg actacmtact       600
     gtacagacga gacagaaaca gaaacggagg aggtgtggcc ctctacatac ataaatcact       660
     gacagttagc gttatttcat catctgacgg tgaatggtcg ggcaagccag gcaagccgga       720
     atatcttttc tgtgaggtat cggcaaaggg agtctctccc atcttcgtgg gggttgtgta       780
     tcgtccacct catgctcctt ttttccaagg ctctaacttt atagaccaac taacaaccca       840
     catgcacaac tattccacga aggtcataat gggwgacttc aactctgacc aactttcctc       900
     atctgaagat gccaatttca tcagggcctt cattgatgaa aactcccttt cgtctgttcc       960
     ctatggtgcc acgcaccaca aacagggttc tgacacctgg cttgacctgt gcctaattga      1020
     tgagcaggat cgcctgctgt cacgctggaa gacagacaca cctttcatca acggacatga      1080
     ccttatcacg gccactctcg acgtacagat tccacgctac gtacctaaca catactctta      1140
     cagaaactat aaaggaatca gcgccgagaa gctaagggac tttcttagcg catgtgactg      1200
     gtcatccctc accacgtcat cactcgacga atgcatatct atacttaacg ctaacctaac      1260
     gaacgccatt aatcatctcg ccccattacg gactgtgaca ccaagacgaa aacgtcaccc      1320
     gtggttcacc acggctcttc gtgaccttgt atctgagagg gacggacttt acaggcgttt      1380
     cagggactct aggctcgatt cggatctccg cwtttataga ctagctagag acgatgctca      1440
     cagacaggtc gaggaagcca ggctgaatta ttattattca cgcctgtcaa ccttgactga      1500
     tgttgccgag atctggagag agctggagaa acttggaatt tccgcctcta aggccccttc      1560
     accatctcgc ttctccacag atgaactcaa caagcatttc agctcgatct ccaatgatcc      1620
     gccggctcct gctgttgagg attatcttct caccctggaa agtctagacc tcccggaaca      1680
     tttcaagttc agcactataa cggaatcgga cgtgttggct gcggtatcgc actttgacac      1740
     ccaggccagg ggaagtgacg gcatcccaca ggttgttatt tcaaaagcac tgccagtact      1800
     cgctccttta ctatgtcaaa ttttcaacct gtccctgagc gagtcacgct tcccatctgc      1860
     ctggaaattg tcgcttgtgc gagcactcaa caaagtcagt tcaccaacag ccctgactga      1920
     ctaccgtccg atttctcttc tctgctttct atccaaggcg ctggagtggc tggtgcacag      1980
     gcaagtctca gaatatcttg aatcaaggct cttccttgac aatyttcaaa caggcttccg      2040
     cactggccac agcacwcagt ctggcctaat taagctaact gatgatgtca gggtygggat      2100
     aaacaaaaag aaagtaacac ttcttctttt tgattttagc aaggcgtttg acactgtgtg      2160
     tcacgtcagg ctcctgagaa agctatccwc tttcggcttc tcaaagcagg tcatccgctg      2220
     gtttgcctcc tacctcactg ggagagagca ggccgtcgtt ggtgacaata gcgaacgttc      2280
     ctcttctcgg cctcttaaca tcggtgtccc gcaggggtcc gttttgggtc ccytgctgtt      2340
     cgcattgtac atcaatgaca tcggtttctg cctagattcc gatgtktccc atctmatcta      2400
     tgcggatgac ttgcaaattt acagccaatg ccaccttgag gagctcgatt cttkatctaa      2460
     caagatgagt gctaacgccg agaggataat gggctgggct gcacaaaacc gtctaaaact      2520
     taatgttatt aaaactaaag caattgtcct gggctccccc tactacataa atgctttacc      2580
     ttcagtagct aacaccttta ttaatatagg gggwgcccgg gtcaactwtg aatcwtctgt      2640
     gcgcaatctg ggattggtgc ttgactctaa actcacgtgg aaagagcacg ttacacaawt      2700
     gtgtaaacgt gctcactcac taatgtacag gctttacttt ttcagaaaga gtaccaatct      2760
     cagrctgcgc aarcaccttg tgcaagcgct ccttttccaa taatcgacta ctgctcactt      2820
     gtgtactgtg acctgactca agaacttgac acaaaactac agagacttgt gaacgcagga      2880
     attcgttaca tctatggtgt aaggagggac aagcacatct ccccgtacag gcgtgagttg      2940
     caatggctta ccaccgccgg acgcaggaag taactgttta attcagctgt accatcatac      3000
     gtactggcct aytttgactt ccgcgtcgca ctccggcctg tgagggggga ggtgacacct      3060
     ctggatatcc ckaccttcgc gacggagacg ctgaggaact cgtttcatat cagcgcctca      3120
     tacctctgga acgryctacc atcacacatt cgcaacacga catccatcac cagcttcgar      3180
     aaacttgcta aagaatactt tttcgaactc gaaaacacat cttgcacaca cacacaca        3238
//
ID   L2-1_RPr    repbase;    DNA;    INV; 5068 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Kiri-type non-LTR retrotransposon: consensus.
XX
KW   Kiri; Non-LTR Retrotransposon; Transposable Element; L2-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5068
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3474-3474 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2046..4850
FT                 /product="L2-1_RPr_2p"
FT                 /translation="MTNALTSCHVNAQSLLAHYDEFLQYFLDNFYHIIAVS
FT                 ETWLKPYIPSSQVSIPNFTFLRCDREDRTGGGVGLFVHDSLKARLLAHSPS
FT                 SESHQPEYMFVEISSPLSSSPLLFVVVYRPPRVPFDLSFESLLFELVPAYS
FT                 HIILAGDFNSNLLVESTEMLYLTNLFYSLNLYVVPYSPTHHTYSSDTWLDL
FT                 FIIDSQDKLLSSSQLPVSFLSAHDLIQITYNLHTPPFVPRTFSFRHLDSLC
FT                 FEPLKTDLETLPFETLFYTDSIDTKVEILTHHLLNILDSHAPIKTCHVRRP
FT                 PAPWLTPELKDMMRRREAARRRFRRTRSPHDYSLYKLLRNLTLASVRRAKS
FT                 LHIHLSLSNAPDSKSKWAILRKLSLCRSNRSCPISISPDDLNVHFTSFLTN
FT                 ASCNVPALILPSFDPNNFFFHHITPEDLLTSVLKSRTNDYGPDNIPVKLIK
FT                 ACLPAILPVLYHIYNFSLQNSIFPSCWKTALVRPLNKISNPTSPIDFRPIS
FT                 ILSNFSKPFERLVQSQLSNYLEQNNLLNPLQSGFRPSYSTHSALLKITHDL
FT                 QTAIDDQKLTILILLDFSKAFDTVDHHILLSKLQSLSFSNSTLRWFQSFLS
FT                 NRSQFVVTPDSNPSSLLPLSRGVPQGSSLSPTLFSIYINDLPLSISHSQYH
FT                 LYADDFQIYISFSPSDLFEAVFKLQEDLNNISAWATNNKLTLNVEKTKAIV
FT                 IGSNPLLKSLAPLPNLFLYNTPIKYCSSVKNLGITFDQNLSWKNHVSQISR
FT                 RSIHILKQFNSSRHLFPIKTRQLLVSSLIFPHFDYGCLVYGGLSGDIEAKL
FT                 KRLMNCFIRFIFSISRDSRISHCYDELKWLFPVYRRQYFLASFLFQVIQSQ
FT                 RPSYIFQLLKFKSSIHSRNTRSRSSDLYIPSHRTSSFDKSFLIRATSLWNS
FT                 LPSSVRHAPTLSIFKSRLFSYLLSIQLPPKF"
FT   CDS           join(407..1393,1397..2050)
FT                 /product="L2-1_RPr_1p"
FT                 /translation="MVVCPACNSTVTRDDKKSLTCSNVQCKAIYHSKCCNL
FT                 KDKDVDNLIALNKTWICPACDTAKKNFPHSERPVTPSEASAASSLNDESVR
FT                 KLWEVLKELAEEVRLMKVRLPESGCDFKDIKSTLDKQAELSFENSERLKKL
FT                 ENLLETQNKQIELLSSENCTLKKKVSALEVRVNTSEQRLLRNTIEIRGIPS
FT                 KQEEVPAAVVVSVCAGLGLKISSDDLDHVERLGPRRDGAPGAVVARFVRQS
FT                 LRDEVVRQRRIKRDFSTRHLGYPDSDSRVYVGDAMTATNRHLYWLARQKRS
FT                 ADKVKYVWFSGGRVKCRRGDGLPVVVINSPEDLDVFPPIFSVHFFSQFHLK
FT                 TLFSFILFYKVVFLFGFMHLFSHYLCKSFLFNFLYSKDVLIILFFLSFLIF
FT                 QFSNKWIQSHLQTLFSFILFYKVVFLFGFMHLFSHYLCKSFLFNFLYSKDV
FT                 LIILFFIIFNFSIFKQVDLISFTDLIFFYSFDKVVFIWFFCSYSYIICAIF
FT                 FFEPFYLQWCHYYVLFIIFNFSFFKQVEDTLLFCTAAVFPLDLYPSCSLND
FT                 "
XX
SQ   Sequence 5068 BP; 1202 A; 1231 C; 780 G; 1854 T; 1 other;
     cagtttggtc tgaacttttg taccgtcacc acgctacttt ttgctctctc gtttttatta        60
     agtttttagt gttataagta attttctgca atttattttt cacctgtgtg cccgtgaaag       120
     tgtgcagttt ttaccgaata gattgtttac actcgctaaa agtttctgta agcttgaata       180
     aagtggacag tgaagttatt taactcaatc tagttacgag acaggtaaga gataactgtg       240
     gtcaggtgtc agtggtgggg tgcgcatgtg cattatacga caactgataa cgctctcact       300
     gctgtggcat tcagtactct cttaatctta ttaagggcgt attacttttt ccaattttgt       360
     ttttattgct tttttgcttt cgtttcgcac tgattgtaaa ttgaagatgg tggtgtgccc       420
     tgcatgtaat agtacggtta caagggatga taagaaatca ctcacctgct ctaatgtgca       480
     gtgtaaagct atttatcata gcaaatgctg caatttgaaa gataaggatg ttgataacct       540
     tatagcctta aataagacgt ggatttgccc tgcttgtgac acggctaaga aaaattttcc       600
     acacagcgaa aggcctgtta caccatcgga ggcctctgca gcttcctctt taaatgatga       660
     aagtgtacgt aagctctggg aggtattgaa ggagttggct gaggaggtta gattgatgaa       720
     ggttaggctt ccggaatcag gctgtgattt caaagatatc aagtcaacac ttgacaagca       780
     agctgaactc agtttcgaaa attctgagag gcttaagaag cttgagaatc tgcttgagac       840
     tcaaaataaa caaattgagc ttctctcctc cgagaattgc actttaaaaa agaaagtctc       900
     cgctcttgag gttagagtga acacgagtga gcagcgactt ctcaggaata ctattgagat       960
     tcgaggtatt ccttcaaaac aagaggaggt gcctgctgct gttgtggtga gtgtttgcgc      1020
     tggtctaggc ctaaagatta gctctgacga cttggaccac gttgagcggc ttggtccgag      1080
     gcgggacggc gcccctggag ctgttgtggc ccggttcgtt aggcagtctc tgcgggacga      1140
     ggtggtacgc cagaggagaa taaagaggga tttctccact cgtcatcttg gctaccctga      1200
     tagtgactct cgtgtttacg tcggagatgc gatgaccgct actaacaggc atttgtattg      1260
     gctggctcga cagaagagat ctgcggacaa agttaaatac gtctggttta gtggtggtcg      1320
     ggtgaagtgc cgtcggggtg atggccttcc ggtcgtcgtc atcaatagtc cagaggactt      1380
     ggatgttttt ccctgaccca ttttttctgt tcactttttc tctcaatttc atttaaagac      1440
     cttattttca tttattttgt tctataaagt ggtttttctg tttggtttta tgcacctatt      1500
     ttcacattat ttatgtaaat cttttctttt taacttttta tatagcaaag atgttttaat      1560
     tattttgttc tttttatctt tcttaatttt tcaattttca aataagtgga ttcagtctca      1620
     tttacagacc ttattttcat ttattttgtt ctataaagtg gtttttttgt ttggttttat      1680
     gcacctattt tcacattatt tatgtaaatc ttttcttttt aattttttat atagcaaaga      1740
     tgttttaatc attttgttct ttatcatttt caatttttca attttcaaac aagtagattt      1800
     aatctcattt acagacctaa ttttctttta ttcctttgat aaagtagttt ttatttggtt      1860
     tttttgttct tattcttata ttatatgtgc aatttttttc tttgaacctt tctatttaca      1920
     atggtgtcat tattatgttc tttttatcat tttcaatttt tcatttttca aacaagtgga      1980
     agatacactt cttttttgta cagcagcagt tttccctctt gatttatatc cttcctgctc      2040
     cttaaatgac taatgccctg acctcctgcc acgtcaacgc tcaatccctc cttgcacatt      2100
     atgatgaatt cctacagtat ttccttgata atttctatca cattatagca gtttccgaaa      2160
     cctggcttaa accctacatt ccttcctcgc aagtttccat tcctaatttc accttcttgc      2220
     gttgtgacag agaagaccgt accggtggag gtgtgggtct ctttgttcat gatagcctga      2280
     aggctagact ccttgctcat tccccttcct ccgaatccca ccaacctgaa tatatgtttg      2340
     tcgaaatatc ttctcctctt tcttcttctc ccctcctttt tgttgttgtt taccgtcccc      2400
     cccgagttcc ttttgaccta tcctttgaat ctctcctctt tgagcttgtc cctgcttact      2460
     ctcatataat ccttgctggc gatttcaatt ccaatctgct tgtcgagtcc actgaaatgt      2520
     tataccttac aaatcttttc tattccttga atctttatgt agttccttac tctcctactc      2580
     atcacacata ttcttccgat acctggcttg accttttcat tatagactcc caagataaac      2640
     ttctgtcctc gtcgcagctc cctgtatctt tcctatccgc tcacgatctc attcaaataa      2700
     cttataattt acatacccca ccttttgttc ctaggacctt ttcctttcgc catcttgatt      2760
     ccctctgttt tgaaccatta aaaactgacc ttgaaaccct tcctttcgaa actttatttt      2820
     ataccgactc tattgatacc aaggttgaaa tcctaacaca tcacctcctt aacatcttag      2880
     actcccatgc tcccattaaa acctgtcatg ttcgacgtcc tcctgcaccc tggcttacac      2940
     cggagctcaa ggacatgatg aggagaagag aggcagccag gaggaggttt agacgcacgc      3000
     gttctcctca tgactactct ctgtataagc tcctgcgtaa ccttactctg gcctctgtcc      3060
     gccgagccaa atcccttcat attcacttat ctctctccaa tgctcctgat tccaaatcga      3120
     aatgggctat ccttcgtaag ctttccctct gtagatctaa tcgctcctgc cccatttcaa      3180
     tatctcctga tgacctgaac gtccacttca cttccttctt aaccaatgcc tcttgtaatg      3240
     ttcctgctct cattttaccc tcctttgatc ctaacaattt ttttttccat catattactc      3300
     ctgaagatct cctaacctca gttctgaaat cccgtacaaa tgactatggc cctgacaaca      3360
     ttcctgttaa attaattaaa gcctgcctcc cagcgatatt gccagtcctt taccatattt      3420
     ataatttctc ccttcagaat tctattttcc catcctgctg gaaaacagcc ctagtccgtc      3480
     ctctaaataa aatctcaaat cccacctctc ctattgattt tcgtcccatc tctattttat      3540
     caaatttctc caaacccttt gaacgtttag tgcaatccca gctttctaat tacctcgaac      3600
     aaaacaatct ccttaatcca ctccaatctg gctttcgtcc ttcttattcc actcattctg      3660
     cactcttgaa aattacccat gacttgcaga cggctattga cgaccaaaaa cttaccatcc      3720
     ttatactcct agacttctcc aaagcctttg ataccgttga ccatcatatc ctgctatcta      3780
     aactacaatc cctctctttt tccaatagca ccctccgttg gttccaatcc ttcctgtcta      3840
     atcgttccca attcgttgtc actcccgata gtaatccttc ttcacttctt cctttgtcac      3900
     gcggtgtacc tcaaggttct tccctatctc ccaccctctt ctcaatttac atcaatgacc      3960
     ttcctctttc catctctcat tcccagtatc acctctatgc tgatgatttt cagatttaca      4020
     tatccttttc cccgtcggat ttgtttgaag ctgtatttaa acttcaagaa gacctcaata      4080
     acatctcagc atgggccacg aacaataagc ttaccctgaa tgtagaaaag accaaagcta      4140
     tagttattgg ctccaaccca ctccttaaat cattggctcc tcttcctaat cttttccttt      4200
     acaatacccc aataaaatat tgttcctctg tgaaaaacct tggtatcact ttcgatcaaa      4260
     acctatcctg gaaaaaccat gtttcccaaa tctctcgtcg ttccatccat atccttaagc      4320
     agtttaatag ttcccgtcac ctttttccaa ttaagacccg gcaactccta gtttcctctc      4380
     ttatattccc ccatttcgac tatggttgtt tagtgtatgg cggtctatct ggtgatattg      4440
     aagctaagct taagcgcctc atgaactgct tcataagatt tattttcagc atttccagag      4500
     actctcgcat ttcgcactgc tacgatgagt tgaagtggct ttttcctgtc tatcgccgcc      4560
     aatatttttt ggcttctttc ctttttcaag tcatccagtc tcaaaggcct tcctatattt      4620
     ttcaactcct taagtttaaa tcctccatcc attcccgtaa cactagatct cgctcatctg      4680
     atctctatat tccctctcac cgtacctcat cctttgacaa gtccttcctc atacgtgcta      4740
     cctctctctg gaactccttg ccttcatctg tccgccatgc tcctacccta tccatcttta      4800
     aatcccgtct attcagttat ctcctttcta ttcagcttcc tccgaaattc taattgtttt      4860
     aatttatttc cttaatttct gctgttttat tattttattt ttactttcat tttcacttat      4920
     tatattttca cttttgtaaa tatttattta tttatttaat ttctgtataa tcacaggcca      4980
     aactgttaag gcctctattt gtwcctgtat ttattcttag gggacaattg tcccagaata      5040
     ataaatttct tttctatttc tatttcta                                         5068
//
ID   L2-1_SIn    repbase;    DNA;    INV; 4636 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   L2-type retrotransposon sequence - a consensus.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4636
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 469-469 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1523
FT                 /product="L2-1_SIn_1p"
FT                 /translation="MSERGLAAADEDGIEAANDENKNKGLRKRISLTNVSL
FT                 APSSTSVSASQILALRQTVNRHSDEVAKILLSSKESLERRRQIESAFRVCR
FT                 DAFLELSSAYLSVLEKHVSAPPLSEELKTHIDKAVTNAFDSLRTRMEHADR
FT                 AVGATCAPSTSANTGAKTYASACSAQPTVRVARGPVLDIPKTTNLIVTPTG
FT                 ESGLATSRETRSVLEKSLKPSEYDLKICRISSVRKNGIRIEAHSVDLAKLR
FT                 QSQVLDRVGLRLEQETKINPRLIVHGVPCGMKSEDLKKEIISLNLKNVASP
FT                 DIRVIYIFPPRENRKFTSCVIEVSPAIRAQLLKEELIFVNYSVCKIADYVK
FT                 VLQCYRCLAFGHFAKTCKFPPRCGHCAEGHETRDCVTRGRDPVCGNCMRWL
FT                 PHEGRSHSALDSRYCPILRRRVADRIKNIDYGQ"
FT   CDS           1516..4335
FT                 /product="L2-1_SIn_2p"
FT                 /translation="MDSKETDYIQLCHVNCQSLLAHIDEFRVYFVNSKYHI
FT                 ICLTETWLKPAISDQMISLQGYYPLRCDRFGKQGGGVALFVREHLRVRLIQ
FT                 HSNNVYSHKPEYILAEVIPDGRSKILLGVVYRPPHCGYLADFLNVFTDASA
FT                 LYNHSIIFGDFNADLCSQTFDSEQIKSFVDTSNLFLVPFEPTHHTRSSSTW
FT                 LDLCIIDDGEKLVTRGQRDVTFLSAHQLIEITYRIKVDRYCKRCISARDFR
FT                 SFDRDTFLDELSTCDWEALYRECDVDIKVRMFNSYVTGCFDKHAPLKEIVP
FT                 RHLPSPWITNEIRRSMAERNRSRRRWRRSRLEADYDSFKKLRNQVQHMVRT
FT                 AKQNYYQATFCELEGSDAVWRRLKHLGLIKSKAIERRLLFSTEDLNAFFTN
FT                 HVMATEHGGDDVHLGEESYDDSKFYWSYIEPRHVLKALTSRGSEAAGVDGM
FT                 APRLLRIALPCILPAVTHIFNYCLEAGVYPDQWRTAAICPIPKVKFPSQMK
FT                 DYRPISILCFISKVLERIVADQIKVYLERQDVLDPNQSAYLKGASTQTALI
FT                 KFLDDVRQAADSRRVTVCVFFDFTKAFDYVCHRTLIEKLRNIGFSCSSLRW
FT                 VCAYLFLRKQAVRDPITRGLSEVRSITSGVPQGSVLGPLLFVLYLLDFRDI
FT                 LKACNYSFYADDLLIYFHAEPRYLHDSISLVNEDIRSITDWATNNCLILNP
FT                 SKTTAMVVGTARYVNNLALNELPCVRVNNSDIPFVDSVNYLGLTISDNLSW
FT                 EKQATRTTSRIYASLHQLKLCKNLLPISLRERLVRTLIFPILDYCSVALTD
FT                 ISQEQNLRLQRALNACVRFIYQARRDEHITPYFDKLGWLKTHSRRSYLIGS
FT                 LTFRIMRTKKPPAIYKGYTHRSDVIVRNTRAASDMLTVPYCRTELYRKSFR
FT                 CASIELWNSLPSDIRCAKSLDIFKSGLYDFLFGTNR"
XX
SQ   Sequence 4636 BP; 1176 A; 1083 C; 1134 G; 1241 T; 2 other;
     gtatttggat actttttctg cagttttctg ccccgcgggg catctttgtt gcagttccgg        60
     gtttttattc agggctgttt tcttgctctc tgttcttact tgcgaaattt tgtgcggctt       120
     tgtctggatt ttcggattct cactgtgatc tttcggtgat ctctactcgc gacggtgtaa       180
     gaagacatcg gcggacgacg cagaggactc tgattggctg ccggtcgcgc tgttggtgca       240
     cgatgtcgga gcgtggtctc gccgcggccg acgaggacgg tattgaagcg gcgaacgacg       300
     aaaacaagaa caagggactt cgaaagcgga tctcattgac gaacgtgtct ctcgcaccga       360
     gttcgacgag cgtgagtgcg tctcagattc tcgctctacg tcagactgtg aacagacaca       420
     gcgacgaagt agcgaaaatt ttgttaagca gcaaggagtc cctggagagg cggaggcaga       480
     tcgagtccgc ctttcgtgtc tgcagggacg catttctcga gctgtcatcg gcttatttaa       540
     gtgttttgga aaaacatgtg tctgctcctc cattatctga ggaacttaaa actcatatag       600
     ataaagcagt cactaatgcg tttgactcct tgcggacgcg aatggaacat gccgaccggg       660
     cggtcggggc gacctgtgcg ccgagtacgt ctgctaatac aggcgcgaaa acctatgcgt       720
     ccgcttgctc ggcgcaaccg acggtccgcg tggccagggg tcctgttctg gacattccaa       780
     agaccactaa tcttatagtc actcccacgg gcgagtctgg ccttgcgact tctcgcgaaa       840
     ccaggagtgt cttggaaaaa tcgttaaagc cctccgagta cgacctaaaa atatgtcgga       900
     tatcgtcagt cagaaaaaac ggcattcgta tcgaggccca ttccgtggat ttggccaaat       960
     tgaggcaatc gcaggttttg gacagggtcg gtctcaggct agagcaggaa accaaaatca      1020
     atcctcggct catagtgcac ggagttccct gcggtatgaa gagtgaggat ctcaagaagg      1080
     aaatcatctc tctgaatttg aagaatgttg cttccccgga catcagggtt atttatattt      1140
     tccctccaag agagaatcga aaattcacca gctgtgtcat agaggtatca cccgctatcc      1200
     gcgcccaatt actgaaggag gaattaattt ttgtaaatta ttctgtctgc aaaattgctg      1260
     actacgtaaa ggttctacag tgctatagat gcttggcatt cggtcacttc gccaagacct      1320
     gtaagtttcc acctcgctgc ggtcactgtg ctgagggaca cgaaaccagg gattgtgtca      1380
     cgagggggag ggatccggtc tgcggcaact gcatgcgatg gctgcctcac gaggggcgat      1440
     ctcactcagc attggatagc agatactgcc ccatcttgcg aaggagggtc gccgatcgta      1500
     taaagaacat agattatgga cagtaaagag acggattaca ttcaattatg tcatgttaac      1560
     tgccaatcgc tgcttgcgca tatagacgaa ttccgagtct actttgttaa ctctaagtat      1620
     catattatct gccttacaga aacctggctc aaaccagcta tttcggatca aatgatatct      1680
     ctgcagggct actatccgct cagatgtgat cggttcggga agcagggggg aggtgtggct      1740
     ctcttcgtgc gcgagcacct gcgggtccga ctgatacaac attcaaataa cgtttatagt      1800
     cacaaaccgg agtacattct cgcggaggtg attccggacg gaaggtcgaa gattcttctc      1860
     ggcgtggtgt acaggcctcc acactgtggg tatctggcgg attttctaaa cgtcttcaca      1920
     gatgcttctg cattatataa tcactccatc atcttcggtg attttaatgc cgacttgtgc      1980
     tctcagacgt tcgactctga gcagattaag tctttcgtgg acacatctaa tctattcctg      2040
     gtgcctttcg agccaacaca ccacactcgt tcctcttcca cgtggctgga tctatgtatc      2100
     atcgacgatg gtgaaaaact tgtgacgagg ggtcaacgcg atgtcacgtt tctctccgca      2160
     catcagctga ttgagataac gtacaggatc aaagttgatc gctattgcaa aaggtgcatc      2220
     tcagcgcgag attttcgttc ctttgataga gacaccttcc tggacgagct tagcacgtgc      2280
     gactgggagg ctctgtaccg tgagtgtgat gttgacataa aggtcaggat gttcaacagc      2340
     tacgtcactg gatgcttcga caagcatgct ccgctgaaag aaattgttcc aaggcacctg      2400
     ccttcgccgt ggatcactaa cgagatcaga aggtccatgg cggagaggaa caggagtcgg      2460
     agaagatgga ggaggagccg tctagaggcg gattacgact ctttcaagaa gctaagaaat      2520
     caggtacaac acatggtacg caccgctaag caaaactact atcaggcgac cttctgcgag      2580
     ctcgaggggt ccgatgctgt gtggaggagg ctaaaacatc tcgggttgat aaaatccaag      2640
     gcgatagaga ggagactact cttttccacg gaagatttaa acgcattctt tactaaccac      2700
     gtaatggcga cggagcatgg aggtgatgat gtccacctgg gagaggagtc gtacgacgat      2760
     tcaaaattct attggagcta catcgagcct cgccacgtct taaaggctct aacatcacga      2820
     gggtctgaag ctgcgggcgt ggacggtatg gcaccgaggc tgctgcgcat agccttgccg      2880
     tgtattctgc ccgctgtgac tcatattttc aactactgcc tcgaggctgg agtgtatccc      2940
     gatcagtggc gtacagcggc catctgtcca atacctaagg tcaagttccc ttctcaaatg      3000
     aaggactacc ggccgatctc aattctgtgt ttcatctcca aggtcttgga acgaattgtg      3060
     gcagatcaga taaaagtcta cctagagaga caggacgtct tggatccaaa tcagtctgct      3120
     tatctgaagg gcgcatccac tcaaacggcc ttgatcaaat ttctggacga tgtccgccag      3180
     gcggcggatt ctagaagagt cacagtgtgc gtcttcttcg acttcacaaa ggcgtttgac      3240
     tacgtctgcc atcgcacatt aatagagaag ttgaggaata taggcttttc gtgttcctca      3300
     ttacgctggg tttgtgccta tctttttctt aggaaacaag cagttagaga tccaatcacg      3360
     cgtgggttgt cagaggtcag aagcatcacc tcgggagtac cacagggctc tgttctgggg      3420
     cctctgctgt tcgttcttta tctcttggat ttcagggaca ttttaaaagc ctgcaattat      3480
     agcttttatg cggatgatct gcttatatac tttcacgcag agcctcgata tttgcacgac      3540
     agcatatctt tagtcaacga agatatcagg agcatcacag actgggccac taataattgt      3600
     cttatactaa acccctccaa aaccacagca atggtagtgg gtacagccag gtacgtgaat      3660
     aaccttgccc tgaacgagct tccctgcgta agggttaaca actccgacat accatttgtg      3720
     gactcagtca attaccttgg actgactatt tctgacaact tatcgtggga gaagcaggca      3780
     acgaggacaa cgtctagaat atacgcttcg ctacatcaat tgaagttatg caaaaatctc      3840
     ttgcctatct ccctcaggga aaggttggta agaacgttaa tttttccaat tctggactac      3900
     tgttcagtcg cccttacgga catctctcaa gagcagaacc tcaggctgca gagggccttg      3960
     aatgcctgtg ttaggttcat ctaccaggca aggagggacg aacatatcac cccttatttt      4020
     gataaactag ggtggttaaa gactcattcc aggagaagtt acttaatagg gagcctcacc      4080
     tttcgtataa tgcgtacaaa aaaacctccc gcaatctaca agggttatac tcacagaagc      4140
     gacgtgatag tccgcaacac aagggccgcg agtgacatgt taaccgtgcc gtactgtaga      4200
     accgagttat ataggaagtc ttttaggtgc gcttccatcg agttatggaa cagcctccca      4260
     tctgacatta gatgtgccaa atcgctagac atctttaaat ctggacttta cgatttcctg      4320
     ttcggaacaa accgttgata ggccgaagtc cgcttcgcct tcgacccgaw caatcgaaac      4380
     atcggtctcg atacagcgac tgactaatta ttttctagtc catatttata ttaatttcca      4440
     cttacattaa ttactaattt ttaatatttt tattgtatat tatcttaatt tcagattata      4500
     ttataactgt atattagtat ctatatttct gcgatttttg atctctcatg tctatcttaa      4560
     agatgtaatt gatsatgcgc ttgaggggat ttaatcccag agcgcgtaat aaatgatgat      4620
     tctctctctc tctctc                                                      4636
//
ID   L2-2_Hmel   repbase;    DNA;    INV; 2978 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2978
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           627..2645
FT                 /product="L2-2_Hmel_1p"
FT                 /translation="KNYYVFNSLLIELFDXYAPLRPIKLKHLPAPWLTDDI
FT                 KKLMAKRNSAKSKYKRNPTEDNFNRFKKLRNRCSKICRDAQRTFIHNSIEN
FT                 SNSARVWKFLDSMGIGGLRKTTTLSDRTDLDEINKHFTHVRLLNHNTKIKT
FT                 IKSIPLTSCTSPFYFTSVSPDDVKKHILAIKSDATGSDQVSRXMITLSINF
FT                 VLPVLCHIFNHSLSSNTFPDSWCQAIVIPIPKVSNPSSFTDYRPISILPFL
FT                 SKVLERIVHQQLLSFLIKNHILSPFQSGFRPGHSTVTALNKVNDDIRYGID
FT                 NQQITILTLLDFSNAFNTVDFEILLAILKSINISSEAIEWFHAYLHGREQX
FT                 IRLNDKQSSVCSIYAGVPQGGVLSPLLFSIFINSVTKLLSLPFHLYADDLQ
FT                 IYTTTKVDDIAKAISQVNSNLQTINTWSKSYGLSVNPKKSQVCILGSSKQL
FT                 TKIDLPSLPPIIFDTCKLEYCNTVKNLGIKVDSTLSWTPQVSELSRKLYCA
FT                 MGRLKRWKHLLPIKTKXTLAHSLLLPILDYADTCYLDLSQQLLNKLERLQN
FT                 LVIRFIFALRKFDHISEHRSRLGWLPIKERRNVHTLTLLYSILFHPETPTY
FT                 LKERFTFLGSESRLAPTLRSQSDNVLEIPLCRTRCYSESFTVQAAKLWNTL
FT                 PRAIRQSKSLNIFKYKVKNYYLSM"
XX
SQ   Sequence 2978 BP; 880 A; 636 C; 459 G; 990 T; 13 other;
     cttattcgta atgaccgtac agggaaaggc ggtggtggag ttgctatcta cttacgcagc        60
     cacatcccct tttctattct cgacaaatct cctacactat actcaaatac ttctgagcat       120
     atttttattg aagtgttatt tggcacatta aaactattac ttggtgtact htacagccct       180
     tcacttcata taaattattt tgacaccttt gaaactttgc tagacaagta tgttccaggt       240
     gttgatcaca ccatcataat gggagatttt aatacttgtc taattaaaaa tgactggcgt       300
     gctagtcgat tacaaaatat tattaaaagt gctaatctta atcttctacc cactaacgct       360
     acccacttct ttcctaatac cactccgtca caattagact taatgatcgt ttcgtcghat       420
     gagcaagtcg ctacttatgg tcagttgtgt gcagaagcgt tctcatatca cgaccttata       480
     tatatgagtt ataaaattcg tacacccaaa attaaaccta ctataatcat gcgtagaagc       540
     tttaaaaact ttaacaatga agctttctta caagatctaa atagtataga ttgggagagt       600
     gtattaaatg ctccaactgt taatgaaaaa attattacgt atttaactcc ctcttaattg       660
     agctcttcga cvtgtacgct ccacttcgac ccataaaact taagcacctt cctgctccgt       720
     ggttaacgga tgatattaag aaacttatgg caaagcgcaa ctctgctaag tcaaagtaca       780
     aaagaaatcc taccgaagat aactttaata ggttcaaaaa actacggaac agatgtagta       840
     aaatttgtag ggatgcacaa cgcactttta ttcataattc catcgaaaat agcaattcag       900
     ctagagtttg gaaatttctg gactcgatgg gcattggagg ccttcgaaaa actactacgt       960
     taagcgayag aacggatctg gacgaaatta ataaacactt tacacatgtc agactattaa      1020
     atcacaatac taaaatwaaa accattaaat ctattcctct tacttcctgt acatctcctt      1080
     tctatttcac ttctgtttct cctgacgatg tgaagaaaca tatactcgcc attaaatctg      1140
     atgctactgg tagcgatcaa gtcagccgaa gdatgattac tttaagtatt aattttgtac      1200
     ttcctgtcct ctgtcacatt ttcaaccatt ccctttcctc aaatactttc cctgattcct      1260
     ggtgtcaggc gatagttatt ccyataccta aagtatctaa tccttcctca tttacagact      1320
     atcgcccgat ctctatcctc ccgttccttt ccaaagtact agaacgtata gtccaccaac      1380
     agctcttgtc cttcctgatc aaaaatcaca tcytatctcc cttccagtct ggattccgcc      1440
     ctggacacag cactgtcacg gcattaaata aggtcaacga cgatattaga tacggaattg      1500
     ataatcaaca aatcactatt cttacccttc tggacttttc aaacgctttt aatactgtcg      1560
     attttgagat tctcttagct atcctaaaat ctattaatat ttcctcagaa gctattgaat      1620
     ggtttcacgc ctatctacat ggacgggagc aatrcattag gctaaatgat aagcagtcgt      1680
     ctgtgtgcag tatttatgct ggtgttcctc agggtggagt actttctcct ctactatttt      1740
     ccatcttcat caattccgtt actaagcttt tatccttacc gtttcaccta tacgctgatg      1800
     acttgcagat ttacacgacc accaaggtag atgacattgc taaggctatt agtcaagtta      1860
     attccaacct gcaaaccatt aatacctgga gcaaatcata tggtttgtct gtaaatccta      1920
     aaaagtctca agtgtgtatt cttggcagtt ctaagcaact taccaaaatc gatctccctt      1980
     cccttccacc tataatcttc gacacctgta aattggagta ttgcaacacc gtaaaaaatc      2040
     taggtatcaa ggtggacagc actctttcgt ggacacctca agtatctgag ctaagccgca      2100
     agctgtactg tgctatgggt aggctgaaaa gatggaaaca tctattaccg attaaaacta      2160
     aamtaaccct agcacactca ctcttactac ccatcctaga ctatgcagac acttgctacc      2220
     tggatttatc gcagcaatta ctcaataaat tagagcgcct acaaaatctt gtcataagat      2280
     ttatctttgc actgaggaaa tttgatcata tcagtgagca tcgatcgagg ctcggatggc      2340
     ttcctatcaa agaacgtcgg aatgttcata ctctaactct tctctactct atcctcttcc      2400
     atcctgaaac tccaacttac cttaaagaac gctttacctt tctcggctct gaatcccgtc      2460
     ttgccccaac tctccgatcc caaagtgata atgtcctgga aatacctttg tgtcgtaccc      2520
     gttgctacag tgagtcattc actgtccaag ctgcgaagct atggaatacv ttaccgcgag      2580
     ctataaggca gtctaaatct ttaaatatat ttaaatataa agttaaaaat tactatctta      2640
     gtatgtagta tttttatata tttcgacgta attgtcatgt atctatgcac ttatctattt      2700
     atttatttat ttacttattt atttatttat ttttattatg tatgtgtatt ctatgtagtt      2760
     tatgagatag tatttatgca ggtgtataaa tatatatatg attgatcgcg ccatgccctg      2820
     tcttttaaat agattcttct aaaattaggt tgcctggaag agatcacttt tagtgataag      2880
     gccgcccttt cacatttatt ttttgtavgt tttttttttg kttttgttaa atatttaata      2940
     tggtgtgaaa taaagagttt ttatgttatg ttatgtta                              2978
//
ID   L2-2_NVi    repbase;    DNA;    INV; 3427 BP.
XX
AC   .
XX
DT   15-FEB-2009 (Rel. 14.02, Created)
DT   15-FEB-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3427
RA   Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(2), 479-479 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1119..3104
FT                 /product="L2-2_NVi_1p"
FT                 /translation="MNSIETDLEGALCXLNNNIKLAIDELAPLKTVCPRRK
FT                 YAPWSGPELLFDEVLRLTNEVDMRSAQERESFLRQLSDALDENRNIWKVMR
FT                 HLGLLPGRKEEEFFGFTPGELNEHFAGVSVSPLENIDNATDTILLASEEGF
FT                 TFSPVSMSDVVLAISHFSSQARGVDGIPCGVXVKALPIIGEFILNLFNCSF
FT                 AQGIFPSIWKQAQLIALRKTSAPSNVKDFRPIALLCFLSKVLEKIAHAQIT
FT                 EYLNKNHILDPFQAGFRKHHSTQTALLKLTDDVRMAIDKKKVTLMLLFDFS
FT                 KAFDTISPSKLLSKLRQLGFSRAALLWIKSYLQGRSQMVISNKNGTSEWLE
FT                 TNLGVPQGSVLGPLLFSLYVNDLQNILDGNTIKHLFYADDLQIYLHTNKDN
FT                 FLDGVARLAEAARLVSGWAESSGLRLNSGKTKSIFFGSMKNVNDIKSWNLP
FT                 GVPLPDGVIVPFSETVVSLGVVLDSKLTWKPQVDAITKKVNKALYSLRFIR
FT                 GCTTETLRRRLVETLIQPHIDYCTVTILDASNEQRIRLQRLSNSCVRFIFG
FT                 VRRDEHISPYRRRLEWLRTDSRRLYFEAILLYKXIRIGEPSYLASFFNKHK
FT                 PRPSSRGVPPELSIPTVSTETGARAFQVQGARFWNSLPSTLRNLPSLASFK
FT                 GALRRHLLATES*"
XX
SQ   Sequence 3427 BP; 834 A; 822 C; 800 G; 936 T; 35 other;
     gtctatttaa atgaaatgtt gtcccaggaa aaattctcga ggaggcccat tgcacaggga        60
     ctgggcttca aatatgtctg gcatgctagg cgtagggggg gggggcgagc gcgcgcacgt       120
     gtttgcatct gctgccgatt tgcaggctat tctcacggcg tgtcaggccg gctcgaaaca       180
     acctcgacga caaaacacac gcatgactgt cactgaaaag gacgaaaact ctgacgctac       240
     ttcaagtaac agacctgagt cggacctggc aagcaaatcg gctgcaactt tgccagcatc       300
     gatgccatca ttgacgactg tatcatctgc atcaayatcc atacagtcgt catcatcgtc       360
     atcatcatca tccgcgccct ctatatgact cgcgaggccc cctgacaatg cgccgggtrc       420
     tgggagtggc ttgagggcgg gctttctcaa tgtgaactcg ctcagggctc gcattgagat       480
     cgtccgtaat tttttgacag agcgcccctc gtttgacatc tttggttttg cggagacatg       540
     gctgggtccg attgtggatg atagcctagt tagcatcggg ggattttcca tcattaggca       600
     ggatcgaaat gtaaacggag gtggcgtcgc cttgtttgtg cgcaatggat tgaaaattaa       660
     aaagcttgct tcatctgata ctatgggtct aggaaaacct ggaatcccag agtacctttt       720
     ttgtagcgta caaaggggcg actcacctcc ggtactactc ggagttattt acaggccccc       780
     gaaaattccg atgcaaaagg actcagacct ttttgatgta ttgcgggact tatgcgacga       840
     atttagtcat aagatcataa tgggtgatct gaactcggat ttactatctg actgacgctg       900
     ctactatcaa gcgtctgtcg agttatctct tcagatcatc cggcatggtc ccacacatca       960
     tacctcatcg tctcacacgt ggattgacct tatcatgacc gacgaaacga cacgatcttg      1020
     gactctaaga atgagtggct gcctagtttc ggcaagcatt gtgtcataga tgtctcgcta      1080
     gacatctcga cctcttgtct tgttgtgact ggacagccat gaattccatc gaaaccgatc      1140
     tggagggcgc tttatgcrtt cttaataata atataaaatt agcaattgat gaattggcgc      1200
     ctttgaaaac ggtttgccca cgtaggaaat atgctccttg gtctggacca gagctscttt      1260
     tcgatgaggt ccttcgactc accaacgagg tcgacatgcg ttctgctcaa gagcgtgart      1320
     ccttccttcg ccaactatcg gacgcccttg atgaaaatag aaatatctgg aaggtaatgc      1380
     gtcatctcgg cctcctgcct gggcgtaagg aggaggagtt ttttggtttt acgccggggg      1440
     agctraacga gcacttcgcg ggagtatcgg tgtcacccct cgaaaatata gacaatgcaa      1500
     cggacactat tttacttgca agcgaggagg gctttacttt tagccctgtt agtatgagcg      1560
     acgtcgtcct tgctatatca catttttcct cgcaagcrag gggtgtcgat ggtattccgt      1620
     gcggggtgrt cgtcaaggcc ctcccaatta ttggcgaatt tattcttaat ctatttaact      1680
     gctccttygc tcaggggatc tttccgagta tctggaagca ggcacagtta atcgcgctaa      1740
     gaaagaccag cgctccttcm aatgttaagg actttcgtcc aattgcaytg ctctgcttcc      1800
     tctcaaaggt actcgagaag atcgcgcacg cccagatcac ggagtatctt aataaaaatc      1860
     atatactcga ccccttccag gccggtttcc gaaaacacca cagtacacar acagcgttat      1920
     taaaactgac cgacgacgta cgcatggcaa ttgacaaaaa gaaggtgacg cttatgctgc      1980
     tgtttgactt cagcaaggcc tttgacacca tctcaccttc maaattacta tctaagctga      2040
     gacagctggg gttctctagg gcggctctcc tgtggattaa rtcatattta caggggcgat      2100
     ctcagatggt aatttcgaat aaaaacggaa cytcagagtg gcttgaaacc aatctgggag      2160
     ttccacaggg ttctgtcctg ggacccctgc tgttcagcct ctatgtcaac gacctgcaaa      2220
     atatactcga cggcaacaca attaaacatc ttttttacgc ggacgacctc cagatctatc      2280
     tacacaccaa caaagataat ttcctggacg gcgtggctcg actggcagaa gcggcacggc      2340
     tggtttctgg ctgggcggag agctccggtc tgcgactcaa ctccggcaaa actaagtcta      2400
     twtttttcgg gtccatgaag aacgttaatg atattaartc atggaacttg cctggggttc      2460
     cgttgccgga cggagtgatc gtcccattca gtgagacggt cgtgagtctt ggtgttgtat      2520
     tggatagtaa acttacttgg aaaccgcagg tggatgctat cacgaaaaaa gtcaacaaag      2580
     ccctgtatag cctgcggttt atcaggggct gcaccactga gactctccgc agaaggctag      2640
     ttgagacact tatacaaccr cacatcgact actgtactgt gactatcctg gacgcgtcta      2700
     acgaacaacg aatacggtta cagagactga gcaattcatg tgtgagattc atcttcgggg      2760
     ttagraggga tgaacacatc agtccttacc ggaggcgtct agaatggctt cgcaccgatt      2820
     ccagaaggct ctactttgag gccattctat tatacaaart aattcggatc ggtgaacctt      2880
     cgtatctggc ctcatttttc aataaacaca agccgagacc ctccagtagg ggagttcctc      2940
     cggaactgag catccctacc gtgagcactg aaaccggggc tagggccttc caggtccagg      3000
     gtgctcggtt ctggaactct ctcccttcta ctctgcgaaa cctaccatct ctcgcctcct      3060
     tcaagggggc actrcggcgg cacctgctgg ccaccgaatc gtgacgactc tgagccctct      3120
     ggcgctgctt cttwattttt attttttaat ctagtcagac tcggcccttg gccgtaaatt      3180
     mtttcagtat tacgacaatg atatagmywt aaawcgtgca atatttttct ttttccwaac      3240
     ngaggtgtta ycactctttt gtgctaaatg tatratatta rattgatata ctgtgataac      3300
     tayctgacta ctgtgatatg gctttgtgat attattttta tatattttmt tagtttctgn      3360
     gtattcttat gtgatctatt gtatttgctt tgaataaaga tctctctctc tctctctctc      3420
     tctctct                                                                3427
//
ID   L2-2_SIn    repbase;    DNA;    INV; 4389 BP.
XX
AC   .
XX
DT   07-FEB-2012 (Rel. 19.02, Created)
DT   07-FEB-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   L2-type retrotransposon sequence - a consensus.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4389
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 470-470 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1570
FT                 /product="L2-2_SIn_1p"
FT                 /translation="MSERDLAGADENSVDAARDENKNKGLRKRISLTNVSL
FT                 APNSTSVSASQILALRQTVNRHSDEVAKILLSSKESLERRRQIESAFRVCR
FT                 DAFLELSSAYLNALEHKASAPPLSEDLKSHINKAVTDAFDSLRTRIDLAGS
FT                 ADGATCVPSTSTNISAKTYASACSAQPVIRVSRGPVLDIPKTTNFIVTPSD
FT                 ESGFATSRETRNALEKTLKPSEYDLKVCRISSVRKNGIRIEAHSVDLAKLR
FT                 ESQVLDRAGLRLEQEAKINPRLIVHGIPCGMKSEDLKKEIVSLNLKNVESP
FT                 DIRVIYIFPPKDNRRSTSCIIEVSPGIRAQLLKDELIFVNYSVCKVADYVK
FT                 VLQCFRCLAFGHFARHCKFPPLCGHCADGHESRDCASRARNPVCGNCKRWL
FT                 PHEERSHSALDCKNCPILRKRVSDRIKIIDYGL"
FT   CDS           1563..4385
FT                 /product="L2-2_SIn_2p"
FT                 /translation="MDCEETEYIRVCHVNCQSLLAHIDEFRAYFVNSRHHI
FT                 ICLSETWLKPAISDHMISLNGFYLLRCDRLGKQGGGVALYVREHLRVQLLQ
FT                 HSGNDYCHRPEYILAEVVPDGASKILLGVVYRPPHCGYLTDFLNIFTDLST
FT                 LYKHSIIFGDFNADLCSRSYDSDQIRSFVEASNLFLVPFEPTHHTRSSSTW
FT                 LDLCVVDDGDKLIMQGQHDVTFLSTHQLIEIKYGIKVDRFRKKSIIARDFR
FT                 SFNEDSFLDELSMYDWEALYREDDVNMKVSIFNSYVLGCFNKHAPLKEIVP
FT                 KHLPSPWITKEIRGRMAERNKSRRRWRRSRSEVDYVTFKKLRNEVQNMIRT
FT                 AKQNYYQATFSALEGSDAMWKRLKHLGLIKSRAMERRLLFSTEDLNNFYTS
FT                 HATASEQRGCDAVYLGEESYDDSNFYWNNIEPHQVLKALTSFKSEAVGEDG
FT                 LAPRLLRIALPCILPAVTHIFNYCLEAGVYPDLWRTAVICPIPKVRSPSQM
FT                 KDYRPISILCAVSKALERVVADQIRVYLGEHDILDPNQSAYLKGASTQTAL
FT                 IRFLDDVRQAADSRKVTVCVFFDFTKAFDYVCHHILIEKLRRVGFSCSSLR
FT                 WICAYLFLRKQAVRDPITRGKSTVRDIVSGVPQGSVLGPLLFVLYLLDFRG
FT                 ILKACNYSFYADDLLIYIHTEARNLYDTILLVNEDIKSITAWATSNCLLLN
FT                 PSKTTAMVMGTARYVNSLALNELPSIVVNNTNIPFVDSVGYLGFTITNNLS
FT                 WENQVTKTTSKIFASLHQLKLCKNLLPISLRERLVKTLIFPILDYCSAALT
FT                 DITREQNLRLQRALNACVRFIYQARRDEHITPYFERLGWLKAYSRRNYLVG
FT                 SLTFCILRTKKPAVIHKGYVHRSDVTSRDTRAPSDTLSLPQCRTELFRRSF
FT                 RCASIELWNGFPLNIRNAESLDVFKSGLYDFLLSANR"
XX
SQ   Sequence 4389 BP; 1076 A; 1024 C; 1105 G; 1184 T; 0 other;
     ggcgctacgt gagtacttac agtcgtgtgt catttcgttc tgcaattttt ggactctttt        60
     tctgcagttt tctgccccgc ggggcgtctt tgttgcagct ctgagtttct ttaaagctat       120
     ttgcttgctc tgttttttct gcttgcggag tttgtgcggc tcttgtccgg gattttttga       180
     tttttctcgc tgtgatcttc cgggaaaatc tctacttgcg acggcataga cgagtcgacg       240
     gacaacgcgg aggactgtga ttggctgccg ggctttctac tggtgcacga tgtcggagcg       300
     tgatctcgcc ggagccgacg agaatagtgt tgatgcggcg cgcgatgaaa acaaaaataa       360
     gggactaagg aaaaggatat ctctaacgaa tgtgtctctc gccccgaatt cgacgagcgt       420
     aagcgcgtct caaatcctcg ctctgcgtca aaccgtaaac agacacagtg acgaggtggc       480
     taagattcta ctaagtagca aggaatcatt agagagacgg aggcagatcg agtccgcttt       540
     tcgcgtctgc agggacgcat ttctcgagct ttcatcggcc tatttaaatg ctttagaaca       600
     caaagcgtcc gctcctccgc tatcggagga tcttaaaagc catataaata aggcagttac       660
     tgacgctttc gactccttgc ggacgcgaat cgatcttgct ggctcggcgg acggggctac       720
     ctgcgttccg agcacgtcta caaatataag cgcgaaaacc tacgcgtccg cttgttccgc       780
     gcaaccggtg atccgcgtgt cccgtggtcc ggtactggac attccaaaga cgacaaattt       840
     tattgttact ccctccgatg agtcgggctt tgcgacctcc cgcgaaacta gaaacgccct       900
     ggaaaaaact cttaagcctt ccgagtacga cttaaaggta tgtagaatat catcagttag       960
     gaagaacggt attcgtatcg aggcccattc tgtggatctg gctaaactga gggagtcgca      1020
     ggtgctggac agggctggtc tcaggctaga gcaggaagct aaaatcaatc ccaggttaat      1080
     agtacacggt atcccctgcg gtatgaagag tgaagatctc aagaaggaga tcgtttcttt      1140
     aaatttgaag aacgttgaat cgccggacat tagggtaatt tatattttcc cacccaagga      1200
     taatcgcaga tccacgagtt gcatcataga ggtgtcaccc ggaatccgtg cccagctgct      1260
     caaggatgag ctcatttttg taaattactc tgtttgcaag gtcgctgatt atgtgaaggt      1320
     tctgcagtgt tttagatgct tggctttcgg tcatttcgct aggcattgca agtttccacc      1380
     cctttgtggc cattgtgcgg acggacacga atccagagat tgtgcctcga gggcgagaaa      1440
     tccagtgtgt ggcaactgta agagatggct tcctcacgag gagcgatctc actcagcgtt      1500
     ggattgcaag aactgcccta tcctgcggaa aagggtctcc gaccgtatca agatcattga      1560
     ctatggactg tgaagagacg gagtacattc gagtgtgtca cgtaaattgt caatcgctgc      1620
     tcgcgcatat tgatgaattt agagcttact ttgtaaattc tagacatcat atcatttgtc      1680
     tctcagaaac ttggcttaaa cctgcaatct cggatcatat gatctcactg aatggcttct      1740
     atctgctcag atgtgaccgt ctcgggaagc agggtggggg tgtggctctc tacgtgcgtg      1800
     agcatctgcg cgtccaactg ctgcagcact cgggtaatga ctactgtcat agacctgagt      1860
     acatactggc ggaggtggtt ccggatggag cgtccaagat cctccttggc gtggtctaca      1920
     ggcctccaca ctgtgggtat ctgaccgact tcttgaacat ctttacagat ttatctacct      1980
     tatacaagca ttcgatcatc ttcggtgact ttaacgctga tctatgttca cggtcttacg      2040
     attcggatca gattcggtct tttgttgaag catctaactt attcctggtg ccttttgagc      2100
     caacacacca cactcgttcc tcttctacgt ggcttgacct atgcgtggtt gacgacggtg      2160
     acaaacttat catgcaaggt cagcacgatg tcaccttcct ctcgacgcat caactgattg      2220
     aaatcaagta cgggatcaaa gtagatcgct ttcgcaaaaa gagcataata gcgcgagatt      2280
     ttcgctcctt caatgaagac tctttccttg atgagctcag catgtacgac tgggaagcct      2340
     tgtatcgcga ggatgatgta aacatgaagg tcagcatatt taatagctat gttctggggt      2400
     gctttaacaa acacgccccc ttgaaggaga ttgtcccgaa gcatctaccg tctccttgga      2460
     tcacgaagga gattaggggg aggatggcgg agagaaacaa aagtcggagg agatggagga      2520
     ggagtcgttc ggaagtggat tacgtcacct tcaagaaact gagaaacgag gttcagaata      2580
     tgatacgcac agcgaaacaa aactactatc aggcgacctt cagcgcgttg gaagggtccg      2640
     acgccatgtg gaagaggctt aaacatctcg ggttgatcaa gtcaagggcg atggagagaa      2700
     gactgctctt ttccacggag gaccttaata atttctacac cagccacgct acggcgtcgg      2760
     agcagcgagg atgcgatgct gtctacctcg gagaagaatc gtacgatgac tccaattttt      2820
     actggaacaa catagagccc caccaggttc tcaaggcctt aacatcattt aagtctgagg      2880
     cggttggaga ggatgggttg gcaccgaggc tgctgcggat agcactaccg tgcattttac      2940
     cagcggtaac acacatcttt aattactgcc ttgaagctgg agtgtatcca gatctgtggc      3000
     gcacggctgt catctgcccg atacccaaag tcaggtcccc ttctcaaatg aaggattata      3060
     gaccgatttc cattttgtgt gctgtttcca aagccttgga acgtgttgtg gcggaccaaa      3120
     tcagggtcta tctgggggag catgacatct tggatccaaa tcagtctgcg tacctgaagg      3180
     gcgcatccac ccagactgcc ttgatcagat ttctcgatga tgtgcgtcaa gcggcggact      3240
     cgcgtaaggt caccgtctgc gttttctttg atttcacgaa agcgttcgat tatgtctgcc      3300
     atcacatatt aattgagaag ctgaggaggg tgggtttctc gtgttcctcc ttgcgctgga      3360
     tctgtgctta cctttttctc aggaagcagg cggtgagaga tccaatcacg cgtggcaagt      3420
     ctacggtcag agacatcgta tctggggtgc cacagggctc tgttcttggc cccttgctgt      3480
     ttgttctata tctcctggac ttcaggggaa tcttaaaggc ctgtaactac agtttttatg      3540
     cggacgatct gctcatctac atacacactg aggctcgaaa tctgtatgac accatactgt      3600
     tagtaaacga ggatatcaag agcattactg cctgggccac tagtaattgt ctattactga      3660
     atccttccaa aactaccgca atggtaatgg gtacggcgag gtacgtgaac agcctagctt      3720
     taaatgagct tcccagcata gtggtcaaca acactaacat accttttgtg gactcggtcg      3780
     gctaccttgg ttttactatc acaaacaact tatcgtggga gaatcaggtt acgaagacta      3840
     cgtctaaaat tttcgcttcg ctacaccaat tgaagctgtg caaaaatctt ttgcctatct      3900
     cccttaggga gaggttggta aaaacgctga tttttcctat tctcgattac tgttctgctg      3960
     cccttacaga tatcacgcgt gagcaaaatc ttaggttgca aagggccttg aacgcctgtg      4020
     tgaggttcat ctatcaggca aggagggacg aacacattac tccctacttt gagagactcg      4080
     gatggcttaa ggcatattcc agacgtaatt acttggtggg cagccttacc ttctgtatac      4140
     tacgtacgaa aaaaccggct gtaatccata aaggttacgt tcaccgtagc gacgtcacgt      4200
     ctcgcgacac ccgggctccg agcgatacgt tatcattgcc acaatgtaga accgagttgt      4260
     tcaggaggtc tttcaggtgt gcctctatcg agctatggaa cggttttcca ttgaacatta      4320
     gaaatgccga atccttagat gtttttaaga gcggactcta tgattttctg ctcagtgcga      4380
     accgctgat                                                              4389
//
ID   L2-3_Hmel   repbase;    DNA;    INV; 3707 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3707
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-3707
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           359..3313
FT                 /product="L2-3_Hmel_1p"
FT                 /translation="MSQILNMSNSSLNADSIYDSITDSDDSFHSASLPLNT
FT                 LLDSKFSSVPKNFNVIHINSQSIPAHYPDLLSSLDVKNVHAILVSETFLKP
FT                 CLPSTSYSIPGFHLIRNDRENKGGGGVAIYLRSHIPFTILDKSHSQYSEAA
FT                 EHIFVEILFGALKVLLGVFYNPSLHINYFESFEILLEKYVSTVDHTILMGD
FT                 FNTCLIKNDKRAKSLKNIVLSSNLHLLSSNATHFFPHCSPSLLDLIIVSXV
FT                 DHVHFHGQLPAEAFSYHDLIYLSYKIRPPKLKPTVVMRRNFKNFDKLKFLY
FT                 DLNLIDWESVYAAATVDLKLNIFNSILTELFDVHAPLRPIKLKHLPAPWLT
FT                 QEIKILMTRRNRAKGKYKRDSSEANLTKYKRLRNECNKVCRDAQRRYIYQS
FT                 LDVGDSGKVWRFLETMGIGRQAKDVSPNINIDSLNSHFASATVNVQNKSNT
FT                 LYHLKLHSKQAMTGFVFDEVSVDDITKNIKAIHSDAIGSDGISRKMLVLSL
FT                 DVILPVLCHIYNYSLSSSSFPNAWQAAHVIPVPKISNPTSYSHFRPISILP
FT                 FLSKVLERIVHRQVSQFLVKNDHLSIFQSGFRPGHSTTTALLKLCDDVRSG
FT                 IDNKQVTVLVLLDFSNAFNTVDFDILLATLEHLNMSTDVITWFHSYLHNRQ
FT                 QSIRYDNKISIPCYLKAGVPQGGVLSPLLFSIFINTLTNLLTVPFHLYADD
FT                 LQIYVSSPIDTLSEAIERINRNLQTIFLWSKTHGLNLNTSKSQYIIIGSQK
FT                 QISKLSITHLPAVTYDGTPISYSNSIKNLGIIMDNTLSWASQISHVSRKIF
FT                 ATMGSLKRWKNFLPIKTKILLSTSLLLPIIDYADICYLDLSQKHLDKLERL
FT                 QNLCIRYIFGLKKFDHISAFRDKLQWLTVRHRRSLHVLCTLYSILFHPNTP
FT                 RYLKERFTFCGTDSTLQLNLRSKSDNKLKIPTCNSVGYMESFTVKSVILWN
FT                 DLPRYIRHSESISIFKKSLKRYYLAQQKTL"
XX
SQ   Sequence 3707 BP; 1106 A; 728 C; 537 G; 1332 T; 4 other;
     atactcataa tttaataact aattaaacac aacaatcaca caagacactg tatctagtga        60
     cagctgtcat ttgamgctga gttaaatgtc aatgttattt ctcttttata gttatagctt       120
     agaaatcttg taaacattgt tttatgtcat attatgtaat taatttgact ggtttacaca       180
     ttatctaaaa tgtaggtgta gacttctttt ttttaaattt atagtttgtt tataatagca       240
     ggtatgttaa ttgttattat tattattatt ttttatatac atttatatat ctattwtaat       300
     tatctgtttt gtctttatat gtaatattta tattgattat atataacaat aatttattat       360
     gagccaaata ttgaatatgt ccaatagttc attgaacgct gatagtatat atgattctat       420
     tacggattcc gatgacagct ttcacagtgc ttccttgcct ttaaacacgc tcttggattc       480
     caaattctcc tctgttccta aaaattttaa tgtcattcat ataaattctc aaagcattcc       540
     agctcactat cccgaccttc tttcctctct tgatgtaaaa aatgtgcatg ctatactggt       600
     atccgaaacc ttcctgaaac cctgtcttcc ttccacttcc tactctattc caggtttcca       660
     tctgatacgt aatgaccgag aaaacaaagg tggtggtggt gtagctatat acctccgcag       720
     tcatatacct tttacaatat tagataaatc acactcccag tactcggaag cggctgagca       780
     tatttttgtt gaaatactgt ttggtgcctt aaaagttctg ttaggtgtct tttataatcc       840
     gtcattgcac attaattatt ttgaatcatt tgaaatatta ttggagaagt atgtatctac       900
     cgtagatcat actatactta tgggggactt taacacatgc ttaattaaaa atgacaaacg       960
     tgcaaaatct ttaaaaaata tagttcttag ctcaaaccta catctacttt catctaatgc      1020
     tactcatttc tttcctcatt gttctccttc actcctagac ctgatcattg tttcctmtgt      1080
     agatcatgtg catttccatg gccaactccc cgccgaagct ttttcctatc atgatctcat      1140
     ttacctctcc tataaaatta gaccaccgaa attaaaaccc acggttgtca tgcgtcgcaa      1200
     ctttaaaaat tttgacaaac ttaaatttct ctatgaccta aatttaatag attgggaaag      1260
     tgtttatgcc gctgcaacag tggatttgaa acttaacatc ttcaattcca ttttaactga      1320
     attatttgat gttcatgccc ccttaagacc tataaaacta aaacaccttc ctgcaccttg      1380
     gctaacgcag gaaataaaga tcttaatgac taggcgcaac agagctaaag gtaaatacaa      1440
     gcgcgattca tctgaagcta atttgacgaa atacaagcga ttgcgtaatg agtgtaacaa      1500
     ggtgtgtaga gatgcgcagc gaaggtatat ttatcaatct ttagatgtag gtgattcggg      1560
     gaaggtttgg cgattccttg agactatggg cattggacga caagcaaagg atgtgagccc      1620
     caatattaat attgatagtc ttaatagtca tttcgcctcg gcaactgtaa atgttcagaa      1680
     taaatcaaat acgctttacc atctaaagtt acattcgaag caagctatga ctggttttgt      1740
     gtttgatgaa gtctctgttg atgatattac aaagaacata aaagccatac actcggatgc      1800
     cattggaagt gatggcatta gtcgcaaaat gctagtacta tcccttgatg tcatccttcc      1860
     agtcctatgt catatctata attattcctt atcctctagt tcttttccca atgcatggca      1920
     agctgctcac gttatccctg tacccaaaat atctaacccc acatcttatt cccacttccg      1980
     tcctatttct atccttccct ttctttctaa agttcttgag cgtattgttc atcgtcaagt      2040
     ttctcaattt ctagtaaaaa atgaccactt aagtatattt cagtctggtt tccgtcctgg      2100
     gcacagtact accaccgcct tgcttaaact atgtgatgat gttcgttctg gaatagataa      2160
     caagcaggtc actgtcctag ttttgcttga cttctccaat gcatttaata ctgtggattt      2220
     tgacattttg cttgctactc ttgaacacct aaatatgtcc actgacgtca tcacatggtt      2280
     ccactcctat ctacataatc gccaacaaag tatacgttat gataataaga tttccattcc      2340
     ttgttacctt aaagcaggag ttccacaggg aggagtattg tctcctttgc tattttcaat      2400
     attcattaac actttaacca atttactcac tgtacctttt cacctatacg ctgatgatct      2460
     gcaaatatat gtatcgtcac ctattgacac cttatcagaa gctattgaac ggattaatcg      2520
     taatcttcaa acaatatttc tatggagcaa aacgcatggc ttaaatttaa acacaagtaa      2580
     atctcagtat attatcattg gtagtcaaaa acaaatttct aaactcagta ttacacattt      2640
     gccagcagtt acttatgatg gtactcctat ctcctatagt aattccatta aaaacctagg      2700
     tatcattatg gataacacct tatcttgggc ttcgcaaatt tcacatgtta gtcgtaaaat      2760
     atttgcgacg atgggttctc tcaagagatg gaaaaatttc cttcccatca aaacaaaaat      2820
     attattatcc acttcccttc ttcttcctat tattgactat gccgacattt gttaccttga      2880
     cctttcacaa aaacatctag ataagcttga gcgtctacaa aatctctgca tcagatatat      2940
     atttgggttg aaaaaattcg atcatatatc agcttttcgt gataagcttc aatggctaac      3000
     agtccggcat cgtcgatctc tccacgtmct atgcacactt tattctatcc ttttccatcc      3060
     caacactccc cgttacctta aagagcgctt cactttctgt ggcaccgatt ccacgcttca      3120
     gctcaatctt cgctccaaaa gtgacaacaa attaaagata cctacctgca acagtgtagg      3180
     ttatatggaa tctttcactg ttaaaagtgt tatcttgtgg aatgatcttc cacgatatat      3240
     ccgacattca gaatcaatta gtatatttaa aaaatccctt aagcgttatt atttggcaca      3300
     acaaaaaact ttatagtgta tgtatatatg tgtgtatttg ttatctatat gtatattgtg      3360
     tgtatatata taaaatatgt attttattaa ttatctaaca tgtataatta ttatatgtac      3420
     ccttttgtat atattataat ttgtatatat aatataagta tcgtctatgt ataatatatc      3480
     aaaaattatt atgttattta tttgtattca tatcgctctt tattacttat gcactaccgt      3540
     tatatcctgc tctatcgtaa gtttatgtta gttaaggtta cctgtaagag atcactaata      3600
     gtgataaggt cgcccttgca tgctactcta tgtcttctgt cttactattt agttatgtgt      3660
     ttgtttatgt atgcaataaa gagttttatc tatctatcta tctatct                    3707
//
ID   L2-3_NVi    repbase;    DNA;    INV; 4612 BP.
XX
AC   .
XX
DT   09-APR-2009 (Rel. 14.04, Created)
DT   09-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4612
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 753-753 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(943..1740,1744..2469,2537..3655,3481..3810,
FT                 3779..4429)
FT                 /product="L2-3_NVi_1p"
FT                 /translation="MEALKTQNIVSERISKIEQRLGPLEKRLKALDELPAL
FT                 KTRIHNAESTITELQAQIQDLSSRSPTMQQDNGSTVPNTAEICSLRSELAE
FT                 VKRRQEQTSNCVVVVTGLHYTRETSLHLLAFSVVNALDPTVLRRDVASVRT
FT                 MGRLDATNSSARGDGRLPPLAVTLSSSALARSIVIAKARKRKLHTSELDAT
FT                 LLEEAKALSPDHQGLININELLPSDVHKLRTRARLEAKKRQGCRTFVREGR
FT                 LYTCAATMTASVLRSSTPTPSWRLFPGFRPLPTSSNTEATXQYTHQTLSSS
FT                 AQERSKVKSEYLFCEVSAKGVSPIFVGVVYRPPHAPFFQGSNFIDQLTTHM
FT                 HNYSTKVIMGDFNSDQLSSSEDAKFIKAFIDENSLSSVPYGATHHKQGSDT
FT                 WLDLCLIDEQDRLLSYWKTNSPFINGHDLITATLDVQIPRYVPNTYSYRNF
FT                 KGISAEKLRDFLSACDWSSLTSSSLDECISTLNANLTNAINHLAPLRTVTP
FT                 RRQRHPWFTTVSHVXXXXRILVALRDLVSERDRLYRRFRDSRLDSDLRIYR
FT                 LARDNAHKQVEEARLNYYYSRLSTLTDVAEIWRELEKLGISATKAPSPSRF
FT                 TTDELNKHFSSISNDPLAPAVEDYLLTLESLDLPEHFEFSTITESDVLAAV
FT                 SHFDTQARGSDGIPQVVISKALPVLAPLLSHIFNLSLSEPCFPSAWKLSLV
FT                 RALNKVSSPTALTDYRPISLLCFLSKALEWLVHRQVSEYLESRLLLDNFQT
FT                 GFRTGHSTHVRVGINKKKVTLLLLFDFSKAFDTVCHVRLLRKLSTFGFSKQ
FT                 VIRWFASYLTGREQAVVGDNSERFSPRRPAGSVWSLLLHCTSTTSVSALIP
FT                 MFPILSMRMTCKFTVNATLRSSILYQTRRAFLSSASRRVRLVLAVALYIND
FT                 IGFCLDSDVSHLIYADDLQIYSQCHLEELDSLSNKMSANAERIMGWAAQNR
FT                 LKLNVNKTKAIVLGSPYYINALPKVTLINMGVPGQLHLLIWGCQVSFESSV
FT                 RNLGLVLDSKLTWKEHVTQVCKRAHSLMYRLYFFRKSTNLRLRKHLVQALL
FT                 FPIIDYCSLVYCDLTQELDLKLQRLVNTGIRYIYGVRRDEXISPYRRELQW
FT                 LTTAGRRKYFTACFLRKMFNSVVPSYVLAFFDFRVTLRPVRGEVTPLEIPA
FT                 FATETLRNSFHISASYLWNNLPSHIRNTSSTVTFRKLAKDHFFQLENT*"
XX
SQ   Sequence 4612 BP; 1195 A; 1284 C; 977 G; 1128 T; 28 other;
     tggtgagtac agttgacagc tctgctgatc catcattttt ctgtactgct tttctgctgc        60
     ttcttgcctt cgggccctct tctgttgtag atagttgcac gctccttttt gcaaccttca       120
     cgtcgataca taaatcgccg aaggctgcaa tttttctctg tcatcttttc tactgcaaac       180
     tttctacacg gctcctaacc tacaaatctg cttggcttgg cttggcttgt ttcctcactt       240
     gcacggcgtc tctttctctc cgcaatcaac atcgtggcga catctgctgc atcgtgggag       300
     aactttcaag gcgacttcac actgatcgag gtcggtactt tcacgctctt tccactaacg       360
     ctccatctag ccgtaagagt cacaacacct actctttcac tccgtcgata acttatcatc       420
     ctcctacaaa tatctgcttt accgactgct agtaagttat cgacgaaaaa tgagtgcaaa       480
     cggcgagaag agtgtggaag tgccttttca gccatgcagc agctgtaaac aacctataca       540
     gcacaaagac cccaagaagt gtgaattttg tggtctgcac taccacgtca agtgccaaaa       600
     caccgttaac atcaaaacta tcgtggtgaa cgacaggcag attatagcct gtccctcatg       660
     tgcagacaac agcaacgcca agggtgccaa actgaggact aaatccacct ctgccacaac       720
     atcagcaacg ggagtaactg caacaacagc agcaggcaag aatactccca aacaacagca       780
     gccggtgaat aagaagacga ggtcagcacc accatcagcc aacacgtcga gaaatccctc       840
     accaacccgc tcggccggag taacaacacc tacgccgtcc gttgaggccg ctttgaggga       900
     cattcgcgga gcactgctct cgacgacata cgcaatgctc aaatggaggc cctcaagacc       960
     cagaacatcg tgtcggagag gatttctaaa attgagcagc gtctgggccc gctggagaag      1020
     cgactcaagg ccctcgatga gctgcctgca ctcaaaactc gcatacacaa tgctgagtcc      1080
     accatcaccg agctgcaggc acaaatccaa gatctgtcat cgaggagccc gacaatgcag      1140
     caggacaacg gcagcactgt gcccaacact gcggagattt gcagcctacg cagtgaattg      1200
     gccgaggtca agaggcgcca ggagcagacc tcgaactgtg tggtcgttgt cacgggtttg      1260
     cattataccc gtgaaacctc gctgcatctc ctcgctttct cagttgtaaa cgcgcttgac      1320
     cccacggtcc ttagaagaga cgtagcatcc gtcaggacca tggggaggct tgatgctaca      1380
     aacagctccg ccaggggtga cggcagactg ccaccactag ccgttaccct atcttcaagt      1440
     gcgcttgcac gctcgatcgt catcgccaaa gcccggaaac gcaagctaca caccagcgaa      1500
     ttggacgcta ccttgctgga ggaggctaaa gctctgagtc ctgaccatca agggctcata      1560
     aacatcaacg agctgctccc ctcagacgtc cataagctgc gtacaagggc taggctggag      1620
     gccaagaaga ggcagggctg ccgaacgttc gtcagagaag ggagactcta tacatgcgct      1680
     gcaacgatga cagcgagcgt gctacgatca tcaacaccga cgccgagctg gagacttttt      1740
     tagcccggtt tccgcccgct gccaacatcg tccaacactg aggctacarc acaatacaca      1800
     caccaaaccc tctcttcatc agctcaggaa cgttctaagg tcaagtctga atatctcttc      1860
     tgtgaggtat cggcaaaggg agtctctcct atcttcgtgg gggttgtgta tcgtccacct      1920
     catgctccat tcttccaagg ctctaacttc atagaccaac taacaaccca catgcacaac      1980
     tattccacga aggtcataat gggagacttc aactctgacc aactttcttc atctgaagat      2040
     gccaagttca tcaaggcctt cattgatgaa aactcccttt catctgttcc ctatggtgcc      2100
     acgcaccaca aacagggttc tgatacctgg cttgacttgt gtctaatcga cgagcaggat      2160
     cgcctgctgt catactggaa gacaaactca cctttcatca acggacatga ccttatcacg      2220
     gccactctcg acgtacagat tccacgatac gtacctaaca catactctta cagaaacttt      2280
     aaaggaatca gcgccgagaa gctaagggac tttcttagcg catgtgactg gtcatccctc      2340
     acctcttcat cactcgacga atgcatatcy acacttaacg ctaacctcac taacgccatc      2400
     aatcatctcg ccccattgcg gactgtgaca ccaagaagac agcgtcaccc gtggttcacc      2460
     acggtttctt gagacagacm trcaggatgc aggacrgccy tyatataacg aaatcttcaa      2520
     aayttcgsgt aattagcacg tywgmascwg aawacgratc ctggtagctc ttcgtgacct      2580
     tgtatcygag agggatagac tttacaggcg tttcagggac tccaggctcg attcggatct      2640
     ccgcatttat agactagcta gagacaatgc tcacaaacaa gtcgaggaag ccaggctgaa      2700
     ttattactat tcacgcctgt cwaccttgac tgatgttgcc gagatctgga gagagctgga      2760
     gaaacttgga atttctgcca ccaaggcccc ttcaccatct cgatttacca cagatgaact      2820
     caacaagcat ttcagctcga tctccaayga tccgttrgct cctgctgttg aggattatct      2880
     tctcaccctg gaaagtcttg acctcccgga acatttcgag ttcagcacta taacggaatc      2940
     ggatgtgttg gctgcagtat cgcacttcga cactcaggcc aggggaagcg acggmatccc      3000
     wcaggttgty atctcaaaag cattgccagt tctcgctccc ttactaagtc atattttcaa      3060
     cctgtctctg agcgaaccct gtttcccatc tgcctggaaa ttgtcacttg tgcgcgcact      3120
     caacaaagtc agttcaccaa cagccctgac tgactaccgt ccgatttcac ttctctgctt      3180
     tctctccaag gccctggagt ggctggtgca caggcaagtc tcagaatacc ttgaatcaag      3240
     gctcttacta gacaactttc aaacaggctt ccgcactggc cacagcactc atgtcagggt      3300
     cgggataaac aaaaagaaag tgacacttct ccttctcttt gactttagca aggcgtttga      3360
     cactgtrtgt cacgtcaggc tcctgagaaa gctatccacc ttcggcttct caaagcaggt      3420
     catccgctgg tttgcctcct atctcactgg gagagagcag gccgtcgttg gtgacaatag      3480
     cgagcgtttc tctcctcggc gtcccgcagg gtccgtttgg tccttgctgt tgcattgtac      3540
     atcaacgaca tcggtttctg ccttgattcc gatgtttccc atcttatcta tgcggatgac      3600
     ttgcaaattt acagtcaatg ccaccttgag gagctcgatt ctttatcaaa caagatgagt      3660
     gctaatgccg agaggataat gggctgggct gcacaaaaca ggctaaaact caatgttaat      3720
     aaaaccaaag caattgtcct gggctcyccc tactacataa atgcactacc taaagtaaca      3780
     cttattaata tgggggtgcc aggtcagctt tgaatcctct gtgcgtaatc tgggattggt      3840
     gcttgactct aaactcacgt ggaaggagca cgttacacaa gtgtgtaagc gtgctcactc      3900
     gctaatgtac aggctctact ttttcagaaa gagtaccaat ctcaggttgc gcaagcatct      3960
     tgtgcaagcg ctcctatttc cgattatcga ctactgttct cttgtatact gtgacctgac      4020
     gcaggaactc gacttaaaac tacagaggct cgtgaataca ggaattcggt acatctatgg      4080
     tgtaaggaga gatgagcrca tctccccgta caggcgggag ctgcagtggc taaccactgc      4140
     cggacgcagg aagtacttca cagcttgttt cctacgtaaa atgtttaact cggtcgtacc      4200
     atcatacgta ctggcctttt ttgacttccg cgtcacactc cggcctgtga ggggcgaggt      4260
     gacacctctg gaaattcctg ctttcgcgac ggagacgctg aggaactcgt ttcatatcag      4320
     cgcttcatac ttatggaata acctgccatc acacatcaga aacacttcat ctaccgtcac      4380
     tttcagaaaa cttgctaagg atcacttttt tcaactcgaa aacacataac tcgtacacac      4440
     tccacgcaca cgcacacacc tactttctcg ctcattccac cttcactatc gccayactyt      4500
     cacactatac atactctaaa catacctcaa tctattgtta tttcttttct tactttgtaa      4560
     tgctgtaaac ttacaatcgt acaatataat gtacgcaaaa taaaactaat ct              4612
//
ID   L2-4_Hmel   repbase;    DNA;    INV; 3097 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3097
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-3097
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2647
FT                 /product="L2-4_Hmel_1p"
FT                 /translation="RTEKGGGGVAIYLRSHIPFTILDKSPSAYSNSLEHII
FT                 IEVLFGSLKLLLGVFYSPTLHINYFDVFETLLEKYIPGVDHTIIMGDFNTC
FT                 LIKKDTRANRLKTIIDSSNLEILPSNATHLFPXCAPSSLDLMIVSSTENVA
FT                 TFGQISADAFSYHDLIYLSYKIRPPKLKPTVVMRRCFNSIDNEKFMHDLNC
FT                 IDWDCIFGAKSVNDQINIFNSLLIELFDIHAPLRPIKLKHLPAPWLTKDIK
FT                 LLMAKRNTAKSKYKKNPTNENLHKYKILRNRCNRTCRDARRSYIHASIDSN
FT                 NSKKTWKFLDAMGIGGRRTKHSSVISNCMDLESLNRFFSTVNRMNSNTKMK
FT                 TLQSLSLLPDPLTIPFLFTSVTPAEVRRHVMAIKSDATGSDNISRRMILLT
FT                 LNSVLPILCHIFNCSLSSCEFPDAWRHALVIPIPKISNPTSFSNYRPISIL
FT                 PFLSKVLERIVHDQLYLFLYKNNILSSFQSGFRPGHSTVTTLNKVCDDIRH
FT                 GIDNQQVTVLALLDFSNAFNTVDFDILLAILRSINISSKATEWFSSYLHGR
FT                 TQSIKHDGKHTSQCHLGAGVPQGGVLSPLLFSIFINNLTPHISTSYHLYAD
FT                 DLQIYKTVPANDTPRAIDEINSNLQLISYWSKSFGLYINPSKSNVCMFGHP
FT                 KQLFKIKPNLPQILFDNVCLEVSDSVKNLGVRMDSTFSWSPQIAELSRKIF
FT                 CAIRSLRRWKNLLPLKTKISLAQTLLLPILDYADSCYLDLSQQLLNKLERM
FT                 QNLIIRFIFGLRKFDHVTQYRTQLKWLTVKDRRQLHSLTLLFTILYHPVTP
FT                 SYLKERFKFLGSNALHSQHLRSRNNNLLEIPSCHTKCYGDSFTVQTVKLWN
FT                 ALPGEVRRSPSVNIFKRRLKNYYLEQYLK"
XX
SQ   Sequence 3097 BP; 922 A; 658 C; 476 G; 1035 T; 6 other;
     taggacagaa aagggtggag ggggtgtagc tatctacctt cgtagtcaca ttccctttac        60
     tattttagat aaatcccctt cagcctactc gaattcctta gagcatataa ttattgaagt       120
     tctgtttggc tcgctaaagc ttttacttgg tgtcttttat agtcctacgc tacacatmaa       180
     ctattttgat gtatttgaga ctctcctaga aaaatatatt cctggagttg atcatactat       240
     tataatgggt gattttaata catgtttgat taaaaaagac acacgcgcaa atcgactcaa       300
     aactataatt gacagttcca accttgaaat actaccctcc aatgcaaccc atctattccc       360
     tkgctgtgcg ccttcctcac tagaccttat gatagtctct tcaacagaga atgttgctac       420
     atttggccaa atatcagctg atgccttttc gtatcacgac ttaatttatc tatcctataa       480
     aatccgccca cctaagctta aacctacagt ggtgatgcga agatgcttta atagcataga       540
     caacgaaaaa ttcatgcatg atttaaattg tatcgactgg gattgtatat ttggcgctaa       600
     gtctgtcaac gaccaaataa acatctttaa ttcccttttg atcgaactat ttgatattca       660
     tgcacctctt aggcctatta aattaaaaca tctccctgct ccgtggttga ctaaggatat       720
     taagctactt atggccaaac gcaatactgc aaagtccaaa tacaagaaaa atcctactaa       780
     tgaaaacttg cataagtaca aaatactacg gaacagatgc aataggactt gcagagatgc       840
     tcggcgtagc tacattcacg catcaattga cagcaacaac tctaaaaaaa cttggaaatt       900
     tctggacgcg atgggtatag gcggaaggcg tacaaaacat tcatctgtca taagcaactg       960
     catggattta gaaagcctaa ataggttttt ctcaactgtc aatcggatga atagtaatac      1020
     caaaatgaaa accctccaat cactatcact acttcctgat cctttaacta tcccctttct      1080
     atttacatct gttactccag cagaagtacg aaggcatgtg atggctatca aatctgatgc      1140
     gacaggtagc gacaacataa gccgacgcat gattttgtta acccttaatt cagttcttcc      1200
     tatcctatgt cacattttca actgctcctt atcctcttgc gaatttcctg atgcttggcg      1260
     tcatgcatta gtgatcccta ttccaaaaat atccaacccc acttcctttt caaactatcg      1320
     tccaatttcc atacttcctt tcctttccaa agtacttgaa cgcattgtgc acgaccagct      1380
     atacctgttc ctatataaaa acaatatcct gtcctctttc cagtccggct tccgtcctgg      1440
     ccatagtaca gttacaacac tcaacaaagt atgtgatgac attagacatg gcattgataa      1500
     ccaacaggtt actgtacttg cgttattgga tttttctaat gcgttcaata cagttgactt      1560
     cgacatcctt ttagcaattc taaggtccat taacatttct tcaaaagcta ctgaatggtt      1620
     ttcctcatat cttcacggcc gcactcaaag cattaagcat gacgggaagc atacttctca      1680
     atgtcattta ggcgctggcg taccgcaagg aggtgtgctg tctcccttac tgttctccat      1740
     ttttattaac aatctcactc cacatatatc aacatcttat catctctacg ccgacgattt      1800
     acaaatttat aagacggtac ctgctaatga cacacccaga gcgatagatg aaattaattc      1860
     caatttacaa ttaattagtt attggagtaa atcgttcgga ctatatatta acccaagtaa      1920
     atctaatgta tgtatgtttg ggcatcctaa gcagttattt aaaataaaac caaatctccc      1980
     tcaaatcctt tttgacaatg tctgcttaga ggttagtgat agtgtcaaga acttaggagt      2040
     cagaatggac agcacatttt cttggtcgcc tcaaattgcc gagctcagcc gtaagatctt      2100
     ctgtgctata agaagtttga gaagatggaa gaacctacta ccattaaaga ctaaaatctc      2160
     attggctcaa actcttcttc tccctatact tgattatgcc gactcgtgtt acttagattt      2220
     atctcaacaa ctactaaata agcttgaacg gatgcagaat cttataatcc gatttatctt      2280
     tggattgcga aagtttgatc acgtaacaca ataccgtact cagcttaaat ggctcactgt      2340
     aaaagaccga cgacaattac actctctcac tctccttttc acaatccttt accaccctgt      2400
     cactccttcg tacctcaaag aacggtttaa gttcttgggg tcgaacgccc tccactccca      2460
     acaccttcgt tcccgcaaca acaacctcct agaaatcccc tcatgtcaca ctaaatgcta      2520
     tggagactct tttactgtcc aaacagtaaa actctggaat gctctgccag gtgaagttag      2580
     acgatctccg tcagtaaata tttttaagcg taggcttaaa aattactact tagaacaata      2640
     tttaaaataa agtatcataa tatgtacgta tgtatacatt tccgtattat tttaatatgt      2700
     atgtatgtat gtgtctatgt atgtatgtat gtatgtatnt gtatgtatgt atgtatgtat      2760
     gtagthtgtg tgtatatgtt tttatatgtg tatgtatgtg tattaaataa atatayatat      2820
     attatttatt taattatata ttttttttac tttgttaadt aatacttttt gcgctactac      2880
     ttactactat aatttcttgc ataagtcctg cacttttaat ggttgcctgt aagagatcac      2940
     ttgcagtgat aaggccgcca ttgcacatgt taatttaagt acctatgtat ccttcttttt      3000
     ctttttcttt tctttctttt tttttctgtg taaattttat atgtatatat ttttcttttc      3060
     atgtgcaata aagtattatt attattatta ttattat                               3097
//
ID   L2-4_NVi    repbase;    DNA;    INV; 5386 BP.
XX
AC   .
XX
DT   13-APR-2009 (Rel. 14.04, Created)
DT   13-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5386
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 754-754 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3329..3727,3731..4930)
FT                 /product="L2-4_NVi_2p"
FT                 /translation="MEYQSLVTEAEERTAQARETFIQNRIFDALDNDKNIW
FT                 NEFRNLGLITKAKNDLHGFTPDELNAHFAGVSISDLERETDLISCRKPARV
FT                 ALLFVKLLFRMLCWQSLISRRKQRVRMGYPRVSSRSLYQFSATILLCSMLH
FT                 YQVESFLGPGRGLVSKVLEKIVHDQISEHLESRKILDPLQTGFRSNNSTQT
FT                 ALLKLTEDIRTGIDSDKQLLTILLLFDFSKAFDTISPSKLLRKLIGMGFSR
FT                 AVVLWVKSFITGRNQRVVTTSNGESDWLTTNLGVPQGSILGPLLFSLYVND
FT                 LKDVLTDFERSERPEELLTNSVAHLLYADDLQTYTQCTRDNLRAGMDRLSA
FT                 VARAVSGWASDNALHLNTGKTKAIIFGSDYNINQLQGLNLPGIEVRDGIFV
FT                 PFVDTVTNLGVVMDSKLTWKAQVDAVSRKVNRTLYGLRSFRSCTTEALRKQ
FT                 LASALAVSHLDYCSVVYLDVSEELQTRLQRLQNACVRYICGAGRREHITPY
FT                 RKKLGWLDTKERRAYFAAVLVYKAYCMGQPPYLAAL*"
FT   CDS           join(600..1118,1018..2313,2317..2640,2644..2997)
FT                 /product="L2-4_NVi_1p"
FT                 /translation="MTRDSCKICKKITRTGGIICKNCSATYHNVCMAWHTN
FT                 YICQACYVRNRSNNSIRTQKIISRVDKDKNKNKDKDTKDNKDNKDIDNSKN
FT                 LNSDKNDRNNTVNNTVNNTADTVNGTEVCNAGDNSTDYADNVSADGNSADL
FT                 ALSASTPTVCASKIISGYKCSALLFTAVINARPFLFLLRLQPSVPAKSSAD
FT                 ISALHYCSLPSSMLDLFSNQFDLLERTVGDLRTLFVGKLDAISQRSDPGPA
FT                 ASEMIDRLVDRVSSLEEKVVMQNSKLEELHDDRFLLSQENKILKDKLEELT
FT                 RVMLKVENFVDGARSGRDDGSSNTSPSNSTGGDANNNNNNECDFDASRVFV
FT                 SLRDIESADANGGAGASTSTDTDDFEVCKSRRRIRGRKCRGRVCEHSAGGQ
FT                 SSSTDGLSSVESTTEIIVSNIFDGSEQERGDVAHAILSTVLPSVARDDIIS
FT                 TRLLRANDDSRRLSPWVVRLSSGAVVKEIMRAKHRITGLNTRHINVSHMPS
FT                 ETSNSLVQSKIFINEMLSKELFLQFNSLKSLARGLGFKYVWHRGGRFLVKM
FT                 RDGELSHSFKTAADLHAIAASYDCAISTKNCVNSGNVRDVDAASLDSQTVT
FT                 SEKTSNNLDRGRVTGAECXGFRAGFLNATSLYAHMGMFRQFLDTAWPSYHI
FT                 FGVAETRFGHEVDDVFVRIDGFSIMRQDRNKRGGGVALYVRNDYKATLLCS
FT                 SPTQIEGKPGIPELMCSVQQGTLTPIFVAVIYRPPGISLENSNFTDDLRNY
FT                 SVGYDCRIVMGDLNANMLLASRDAEFFRELACEMNLKLVNHVGDSHTWIDV
FT                 IFTDDDNVVLNENNSLATFPSKHNIIDV*"
XX
SQ   Sequence 5386 BP; 1496 A; 1083 C; 1298 G; 1480 T; 29 other;
     aaaaatcgca ctattccgtg cgttttatga gcctagaggg gcctctccgc agactggaag        60
     aatttctaac ctcaaaagaa gacagtgctg gggaaccatc attcatctca gtattttcgc       120
     tgtggattta acatcaatac caagcgacat cgtcttcaaa gagacagggc cgttgtcagc       180
     ttcatcgcag tcggcagacg ttcgacaatc gacttcaagt tgtcgactca tatctgaagc       240
     atcgactttg aggttagatc tgtgtatata tcgcttagta agcgcacaga atcatcgcgc       300
     cactgcgttc gagtttcaac tttctgccac aaaagtgcag catcatcgcg actcaaattc       360
     ttcgagcatc agttggctac actgattgga ttttgcgcag gcgcaatcta ctcttcagcg       420
     cgcgaatttt gaattttttc gtagggcgcg aagtttaaaa ttcgatttcg aaatttgaat       480
     tctctgacaa acagtattac tattactatt gcaattatct ttctagtcat aactgtccta       540
     tttattattt tacttattat atttattata taacctaggt ttactattaa ttgttaaaaa       600
     tgacacgaga ttcatgcaaa atatgcaaaa agataactcg cacagggggt ataatttgta       660
     aaaattgttc tgcaacatat cacaatgttt gcatggcctg gcatacaaat tacatatgcc       720
     aggcgtgtta tgtaagaaat agaagcaata actctattag aacacaaaag attatttcga       780
     gggtggacaa ggacaaaaac aaaaataaag ataaagatac caaagataac aaagataata       840
     aagatataga taatagtaaa aatttaaata gtgacaaaaa tgatcgaaat aatactgtta       900
     ataatactgt taataatact gctgatactg ttaacggcac cgaagtatgt aatgctggcg       960
     ataacagtac cgattatgcg gataacgtca gcgctgacgg taatagtgct gatttagctc      1020
     tttctgcttc gactccaacc gtctgtgcca gcaaaatcat cagcggatat aagtgctctg      1080
     cactactgtt cactgccgtc atcaatgctc gaccttttta gcaaccagtt cgatctcctt      1140
     gagaggacag tcggcgatct aaggactctt tttgtgggga agcttgatgc cattagtcag      1200
     agatcagacc ctggcccagc ggcatcagaa atgatcgata gactggtgga tagggtctcg      1260
     tcacttgagg agaaagttgt aatgcaaaac tctaagctgg aagagttgca tgatgatcgc      1320
     tttctgctct ctcaagagaa taagatactt aaagataaat tggaggagct tacgcgagta      1380
     atgctcaaag tggaaaattt tgttgatggt gctcggtctg gcagggatga tggtagttct      1440
     aatactagtc ctagtaatag taccggtggt gatgcgaata ataataacaa caacgagtgt      1500
     gatttcgatg catcacgagt tttcgtctcg cttagggata ttgagtccgc tgatgcgaat      1560
     gggggcgcag gcgcttccac gtcgactgat acagacgatt ttgaggtctg taaaagtcga      1620
     cgtcgcattc ggggtcgcaa gtgtaggggg agggtttgcg aacactctgc tggcgggcaa      1680
     tcctcttcaa cggacgggct gagcagtgtt gagtctacca cagagataat tgtctccaat      1740
     atttttgatg gttccgagca agagcgtgga gacgtggccc acgcaattct cagcactgtt      1800
     ctgccctccg ttgcaaggga tgatattata tctacgcggt tgctgcgtgc aaatgacgac      1860
     agcaggcgcc tatcaccgtg ggttgtccgt ctttcgagcg gcgccgttgt gaaggagata      1920
     atgcgagcga aacacaggat cactggcctc aatacgcggc atatcaacgt ctcgcatatg      1980
     ccttcggaaa cgagtaatag cctggtacag agtaaaatct ttataaatga aatgttaagt      2040
     aaagaattat ttttgcaatt taatagtctg aaaagtttag ctcgcggtct tggtttcaaa      2100
     tacgtttggc atagaggcgg tcgtttccta gtaaaaatgc gggatggaga attgtcgcat      2160
     tcgtttaaaa ctgcagctga cctgcacgcg attgctgcat cgtatgactg tgcaataagc      2220
     actaaaaatt gtgtaaatag tggtaatgtg cgagatgtag acgcggcgag cctagactcg      2280
     cagacggtga ctagtgagaa gactagtaat aattgactag atcgcggacg ggtgacagga      2340
     gcagagtgtr acgggtttag ggcgggtttt cttaacgcta cctctctcta tgcgcatatg      2400
     gggatgttcc gtcaattcct ggacactgct tggccctcgt atcacatttt cggcgtggct      2460
     gagacgcgat tcgggcatga ggtcgatgac gtgttcgttc ggatagatgg gttttcgatt      2520
     atgaggcagg ataggaataa gcgcggcgga ggagtagctc tgtatgtccg gaatgactac      2580
     aaagctacac tactgtgttc atcacctaca cagatcgaag gaaagccggg tattccggaa      2640
     taattaatgt gtagcgttca acagggcacc ctgacgccga tattcgttgc tgtaatttac      2700
     cgtccaccag gtatctctct cgaaaattca aattttaccg atgatttgcg aaactattcc      2760
     gtaggatatg attgtaggat agtgatggga gatctgaacg cgaacatgtt attggcctca      2820
     cgcgatgctg agtttttccg agaactcgcc tgtgaaatga atttaaagtt agtgaatcat      2880
     gtcggtgact cgcatacatg gattgatgta atctttactg acgacgacaa cgtagtgctg      2940
     aatgaaaaca attcgctggc gacgttccca agcaagcaca atattattga tgtttagatt      3000
     aactttcaaa ctgtggaact cccggctctc aacagtttta catacaggga tttcaagtcg      3060
     attaatacgg gggaactcct atcccttctt gcttcttgtg attggtcgat ggtgaattgt      3120
     ccggacagtg gagttgacac ccgactcgaa catctgagtc aaaacataat aagtgtcata      3180
     gaccagcttg ctccgttgaa agaatacaaa ccgaagaaag aaggtctccc tccgtgggtt      3240
     gacgccgagc ttatataacc aacgggacgc ggtgaaaagg cgacacaaac aggcgcggcg      3300
     ggacacacca cgacgagacg aactgtgaat ggaatatcag tctctcgtga ctgaggccga      3360
     agaacgtact gcccaagcac gagagacttt tatacaaaac agaattttcg atgcacttga      3420
     taatgataaa aacatatgga atgaatttcg taatcttggt ctcattacga aagcaaaaaa      3480
     cgacttgcac ggttttactc cagatgaatt gaatgctcac ttcgctggtg tgtccatatc      3540
     cgacctcgag cgtgagacag atctgatatc atgtcggaag ccagcgaggg tggctttact      3600
     tttcgtgaag ttactttttc ggatgttgtg ctggcagtcg ctcatttctc gtcgcaagca      3660
     aagagtgagg atgggatacc ccagagtgtc atcgcgaagt ctctaccagt tctcggccac      3720
     catcttgtag ctttgttcaa tgcttcatta tcaagtggaa tctttcctgg ggcctggaag      3780
     ggggctcgtt tctaaggtcc tggaaaagat agtacatgac cagatctcag aacatctaga      3840
     gtcacggaaa attcttgacc ctttacaaac cggttttcga agcaacaact caacgcagac      3900
     agcactacta aagctgacgg aagacataag gacagggatt gacagtgaca aacagttact      3960
     gaccatctta ctgctttttg actttagcaa ggcgtttgac acgatatccc cttcgaagct      4020
     actccgtaaa ctgatcggga tgggcttctc tagagcagta gtcctgtggg ttaagtcatt      4080
     tattacagga cgtaaccagc gagtggttac tacatctaac ggagaatcag attggctaac      4140
     taccaacctt ggcgtcccac agggctctat tctgggacct ctcctgttca gcctttacgt      4200
     taatgatctc aaagacgtac tgactgactt tgagagatca gagagaccgg aagaactgtt      4260
     gacgaatagt gtcgcgcatt tgctatacgc ggacgacctg caaacctaca ctcaatgtac      4320
     aagagacaat cttcgtgccg gcatggatcg tctgtcggct gtggcgagag ctgtgtcggg      4380
     gtgggcctct gataatgctt tgcatcttaa tactggcaag actaaggcta taatttttgg      4440
     ttcggactat aatattaatc aactgcaggg gttgaacttg cctggtattg aggtgcggga      4500
     cggcatcttt gtcccatttg tcgacacggt aactaacctt ggtgtggtca tggattctaa      4560
     attaacatgg aaagcgcaag ttgatgcggt tagccgaaag gttaacagaa ccctttatgg      4620
     actaaggtcc tttagatcct gtaccaccga ggcgttgcgc aagcagctgg catccgccct      4680
     tgctgtttct cacctagatt actgctctgt agtgtacctt gatgtgtcag aggagctcca      4740
     gacacgacta cagagattgc agaatgcatg tgtgcgctat atatgtggtg ctgggaggcg      4800
     cgagcatatt actccctata gaaagaaact gggctggttg gatactaagg aaagaagggc      4860
     gtactttgcg gcggtgttag tgtataaagc ttattgcatg gggcagccgc cgtaccttgc      4920
     ggccctttaa aaaaaaaaca gtacaggact tccagtaggg tgtccaggga tatttcggtt      4980
     ccaggatcgc gaactgatgt gggactgcat tcgtttgctg tgtacggtgc gagtctatgg      5040
     aattcccttc cgcagggtgt gcgaactttg ccttcgctgg ctgaatttaa gcgagcgttg      5100
     cgtaagcatc tgatgcgcaa tgatctatga tgcgataatt tatgtacctg cgatgttatt      5160
     tattgtcgac tgtgatttta attgtaatga cgtgatrgaa taagtrtaaw rmaamgtgat      5220
     attrrtatta taataagaaa trakamkcaw gtwatgtacr aamtgtgata kaactgytgt      5280
     gwtawtcagc tattgaatgc yaattggacw rtacaawctg yratactatg tatattttrt      5340
     tttttcaayc acgaaaataa aacatttcta ttctattcta ttctat                     5386
//
ID   L2-5_Hmel   repbase;    DNA;    INV; 3590 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3590
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           220..2712
FT                 /product="L2-5_Hmel_1p"
FT                 /translation="FLLLFAIIYTAAMYIGHNSECDDSHDDVFSQCSSXXX
FT                 XXSIHSLPLNSALNTTFENLGKNFNVVHINAQSIPAHYPDLLSSFEATNIH
FT                 AILVSETFLKPCLPSTSFALPGFHLIRNDRTEKGGGGVAIYMRSHIPFSIL
FT                 DKSPSPYSRTSEHLFIQVLFGTFKLLLGVFYSPSSQINYFETFEELLENHV
FT                 PDADHVIIMGDFNTCLLKNDWRTKQLSNIIKSVNLDILPSNPTHFFPHCPP
FT                 SLLDLIIVSSTDRVLTHGQLGAEAFSYHDLIYLSYKIRPPKQKPTVVMRRT
FT                 FKNFNNDSFLQDLNRLPWDTVLNAPTTDDKVSIFNSLLIDLFDVHAPLRPV
FT                 KLKHLPAPWLTDDIKILMSKRNRAKTKFKISPTDANRSKYKKLRNRCCKVC
FT                 RDAQRKHIHESVTNNSPAKVWKFLDSMGIGRQRKTTLINDRMDLDQLNKHF
FT                 TAVNLLSQRMKSSTLLSLSSQPFPSFTPFNFSSVTVTDVRRHILAIKSDAI
FT                 GADGVSRKMILMTLNVVLPVLCHIFNCSLTTNSFPSSWRFAYVIPIPKITN
FT                 PTSFTHYXPISILPFLSKVLERIVHHQLSLYLVKNNILSSFQSGYRPGHST
FT                 VTALNKVCDDIRSGIDKQNITILVLLDFSNAFNTIDVDILLALLKSINISQ
FT                 NAIEWFYSYLVDREQCIRANDKQSSYNRLSAGVPQGGVLSPLLFSIFINFL
FT                 TPLLTLSFHLYADDLQIYTTTAVDDIADAIRHINFNLSIISTWSKSFGLSI
FT                 NPXKSQLCILGNSKQLSKIDYSLLPSVMLDDCKMEFGTCVRNLGIRMDSSL
FT                 TWVPQIAELSRKAFAAIGRVKRWKKFIAA"
XX
SQ   Sequence 3590 BP; 1071 A; 692 C; 583 G; 1224 T; 20 other;
     tgggatgtta tgctggcggg aagcgatgca taaaggtttt tatagtatta gatatacatt        60
     tattttaata ttcatagata tttttatatt ggttgtattt attattatct atttatatat       120
     acatttattt taacatatct ttttatttat atatattatt atttgaacat tacttaaatt       180
     acaataagtt tatttatata ttagtaattt gtttgataat ttttattatt atttgctatt       240
     atatatactg ctgccatgta tattggacat aattctgaat gtgatgactc acatgacgac       300
     gtdttttctc aatgtagttc agwwrstwsw kwysasagta tccattcctt gccacttaat       360
     tcagcattaa atacgacttt tgaaaacctt gggaaaaatt ttaatgtcgt acatataaat       420
     gcacagagca tacctgccca ctatcccgat ttactcagtt catttgaagc aacgaatatc       480
     catgcgatcc tggtttcgga aacgttttta aaaccatgtt taccatcgac atcgtttgca       540
     ttgccagggt ttcacttaat acgcaacgac agaactgaaa agggtggtgg aggtgttgct       600
     atttatatgc gcagtcatat tccttttagt atactagaca agtcgccatc accgtactca       660
     agaacatctg aacatttatt tatccaagta cttttcggga ccttcaaact gttactcgga       720
     gtattttata gcccctcatc tcaaattaat tacttcgaga catttgaaga attactggaa       780
     aatcacgtac cagatgcgga tcaygttata ataatgggcg atttcaacac ctgtctgcta       840
     aaaaatgatt ggcgtacaaa gcagttgtca aatatcataa aaagtgtcaa tttagatata       900
     cttccttcca atcctactca cttttttcca cactgccctc cttctttact ggatttaata       960
     atagtatcgt ctactgatag agttctaacg catggacaac tgggagcaga agctttttcg      1020
     taccacgatc ttatatacct ctcatataaa attcgcccgc caaaacaaaa accaacagtt      1080
     gtgatgcgta gaactttcaa gaacttcaac aacgatagtt ttttgcagga tctgaaccgg      1140
     ctaccttggg atactgttct aaacgcaccg acaactgacg ataaagttag tatatttaac      1200
     tcattgctaa ttgacctttt cgatgtacat gctcctttac gacctgtcaa gctaaaacat      1260
     ttaccagctc cctggcttac ggatgatatt aaaattctta tgtcgaaaag gaatagagca      1320
     aaaaccaaat ttaaaataag tcctacggat gctaaccgct ccaaatacaa aaaactacgg      1380
     aatcgatgtt gcaaagtctg tagggatgcc caacgaaaac acatacacga gtcagtcact      1440
     aataatagtc ctgctaaagt atggaagttt ctcgattcta tgggtattgg gcgacaacgt      1500
     aaaactacac tcataaacga cagaatggat cttgatcaac ttaataagca ttttactgct      1560
     gtgaacctct taagccagag aatgaaatcc agtactctct tgtcactttc ctcacaacct      1620
     ttcccgtctt ttactccttt caatttctct tcagttactg tcacggatgt tagacggcat      1680
     attcttgcca taaagtcgga cgcaattggc gctgatgggg tgagccgtaa aatgattctt      1740
     atgacattga atgttgtgct tcctgtactt tgtcatattt ttaactgttc ccttactacc      1800
     aattccttcc ctagctcttg gagatttgct tatgttatcc ctatacctaa aattaccaat      1860
     cctacatctt tcacacacta tagdcctatt tctattcttc cttttctatc caaagttctc      1920
     gagagaattg tacatcacca actctcdctg tacctagtga aaaacaatat attatcatct      1980
     ttccaatctg gttaccggcc gggacacagc actgttacag cacttaacaa agtatgcgat      2040
     gatataagaa gcggaataga caagcaaaat attaccatat tagtcttatt agatttctct      2100
     aatgccttta acacaattga tgtcgatata cttttagctt tacttaaatc tattaatata      2160
     tcgcaaaacg ctattgaatg gttttattct tacctcgtcg atcgtgaaca atgcattcgt      2220
     gctaatgaca aacagtcctc atacaatcga ctcagtgctg gggtacctca gggtggtgta      2280
     ctttctccgt tacttttttc tatatttata aacttcttaa ctccactgct gacattgtcc      2340
     tttcatcttt acgctgatga cttgcagatt tatacgacca cggcagttga tgatattgct      2400
     gatgctatac ggcatatcaa ttttaactta agcattatta gtacctggag caaatcattt      2460
     ggtctgtcga taaatcctab caagtckcag ytgtgcatcc tcggtaactc aaagcaactc      2520
     tccaaaattg actactccct ccttccttcc gtaatgcttg atgattgcaa gatggagttt      2580
     ggtacttgtg tgaggaatct gggtatcagg atggatagtt ctttgacatg ggttcctcaa      2640
     atagcagagt taagtcgraa agcttttgct gctattggga gggtaaagag atggaaaaaa      2700
     tttattgccg cttaaaacca aaatatcttt agctcaatcc attctctttc ccattctgga      2760
     ttacgcagat tcctgttacc tagatttgtc acagcaatta ctaaacaagc tcgaacgtct      2820
     tcaaaatgta ataattaggt tcatttttgg attgcggaag tatgaccata ttactcaaca      2880
     tcgagttcaa cttaaatggt tgaccatcaa gcatcgacgc aattatcatg cacttatcct      2940
     tttatactct atcttgtatc ttcctttaac tccttcatac ctcaaacaaa gattcacttt      3000
     cctgggctcc cactctcagt ctttcaatct ccgttcaaga tatgacaacg tattggaggt      3060
     tccactatgt cgcaccaagt gctacagtga atcatttacc gtaaaaacgg cgaaattatg      3120
     gaacgagtta cccaggtgta tcaggcagtc gacatcagtt ggtatcttta agcgccggct      3180
     aaaggagtac tacctatcgt tataatctat gtatctgttt tgtgcatatg tatatgtaag      3240
     tatatgtaag tattgtatct ctatatgaat gtatatatgg tatctatgtg tgtatttatg      3300
     tatatatgta tgtatttatg aatgtatgta tgtatttatg tatgtatgta tttatatatg      3360
     aatagcgtat gtttatatgt ttgatataat aaagtacaaa atatctttat gcaaagttaa      3420
     ccgccaccaa ttgtatcata ctattagttt ttgttaaaaa aaagggttgc ctgtaagaaa      3480
     tcacttacag tgataaggcc gcctatgcac tgtatctaaa ttacaaattt aattgtgtaa      3540
     tttaaatctt ctttgtgcaa taaagtgttt ttgattgatt gattgattga                 3590
//
ID   L2-5_NVi    repbase;    DNA;    INV; 4321 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   15-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-5_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4321
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 755-755 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(439..1551,1503..3626,3630..4319)
FT                 /product="L2-5_NVi_1p"
FT                 /translation="GILPHSPVLPVRMNTPPARPRPRRRELNQQQRQQQQI
FT                 HLPRARLERMCPKRINRHPHRLLAPEPNRLREHRLRLSRRPLRTSSRRWMT
FT                 FGRSRMRPFRHKTPCLKGSLELRKGLALLQSRLKALDDLPALKTRLNNVES
FT                 SISELQAQYQELSSRSPAEQQNISIAPASEEINNLRSELAEVKRRQERSAN
FT                 NVVVISDLAYTQETSLQLLAFTVLAALDSTVLRRDVATVRTMGRLDATTTN
FT                 AQGDSRFPPLAVTLSSSALARSIIVAKARKRKLHTSELDAALLEEARALCP
FT                 DHQGLININELLPPDIHKLRIKARLEAKRRRGCRSFVRDGRIYIRSGEDSE
FT                 RATIISTDAELEAFLAHTPPIANTDITHGFFSPYAANSQHGHHTLRHTPII
FT                 PPKPPSKSSNSSTSASKASLSEGLRVCHFNANSLTGHIEMVRLFLSTRSPF
FT                 HVIAVTETWLSDKITSIPSLDDYILYRRDRNRNGGGVALYIHHSLTASVIS
FT                 SSDGEWSGKPGKPEYLFCEISAKGVSPIFVGVVYRPPHSPFIQGSNFIEQL
FT                 TTHMHNYSTKVIMGDFNSDQLSSSEDANFIRAFIDENSLTSVPYGATHHRQ
FT                 DSDTWLDLCLIDEQDCLLSHWKTDTPFINGHDLITATLDVQIPRHVPATYS
FT                 YRNYKGICAEKLRDFLSACDWSSFTTSSLDECITILNANLTNAINHLAPLK
FT                 TVTPGRKRHPWFTAALRDLLTERNRLYRRFRKSRLPWDLYFYRIARDDAHK
FT                 QVEEARLNYYYSRLSTLTDVAEIWRELENLGITTSKSPSPARFSSDALNKH
FT                 FSSISNDPQAPSVEEYLRTLESLDLPEHFIFRAITESDVSAAVSHFNTQAR
FT                 GSDGIPQVVISKALPILAPLLCQIFNLSLSEARFPSAWKSSLVRALNKVNS
FT                 PTALTDYRPISLLCFLSKALEWLVHKQISEYLETRLYLDNFQTGFRTGHST
FT                 QSGLIKLTDDVRLGIDRKKVTLLLLFDFSKAFDTVCHVRLLGKLSSFGFSK
FT                 QVIRWLASYLSGREQAVIGDNNELSTSLPLNTGVPQGSVLGPLLFALYIND
FT                 IGFCLDSDVSHLIYADDLQIYSCHLEELDSCSVRMSANAERIMGWAALNRL
FT                 KLNVLKTKAIVLGSPYYINALPSIANTFINIGGARVDYESSVRNLGLVLDS
FT                 KLTWKEHVTQICKRAHSLMYRLYFFRKSTNFRLRQHLVQALLFPIIDYCSL
FT                 AYCDLTQELDTKLQRLVNTGIRYIYGVRRDEHISPYRRELQWLTTAGRRKY
FT                 FMACFLRKIFNTSVPTYILAFFDFHVALRPVRGEVTPLDIPSFKTETL"
XX
SQ   Sequence 4321 BP; 1111 A; 1194 C; 960 G; 1055 T; 1 other;
     tgctgtaacc taacctacaa cctctcatgg cttttctcct tgctgcacgg cgtctatttc        60
     tcctcaaagc gatccacgtg gagccacctg tcgggtacac ggaacaccac cagcaacatc       120
     atcaatcaca ggtcggtcaa ttctcacctc tctcgattag caccccatct ggcttcgaga       180
     gtattaagtc tctagctctg tcgataactt accacccgct actatcttac aacactctct       240
     acgttatcga ctgccagtaa gttgtcgacg gagacttaac aataacatcg aaaatgagcg       300
     gaattggtgt gaagaatgac gagtcgctcc tcatgtgtgc tcactgcaaa aaaacaaaaa       360
     gagggaaaat gaagacctgc gagttgtgtg accggcagtt ccacaccata tgtgtcgcct       420
     tcaggtctat aatggtgagg gatactgcca cactcgcctg tgctgcctgt gcggatgaat       480
     acgccaccgg cacgcccaag accacgcaga cgagagctaa atcagcagca gcggcagcag       540
     cagcaaatac atctgccaag ggcacgcctg gaacggatgt gcccaaaaag aataaatcgg       600
     cacccgcatc gcttgctggc tccagaaccc aatcgcctgc gagaacacag gctacgttta       660
     tcgagacgtc ccttaaggac atcttcgcgg cgctggatga cattcggaag atccagaatg       720
     aggcccttca ggcacaaaac accgtgtctg aaagggtctc tcgaattgag aaaaggcttg       780
     gccctcttgc aaagccgcct caaagccctt gacgacttgc ctgcgctcaa gactcgacta       840
     aacaatgtcg agtcctccat ctctgagctg caggcacaat atcaagagct gtcgtcaagg       900
     agtcccgcag agcagcagaa catcagcatt gctcctgcct ccgaggagat caacaacctt       960
     cgcagcgagc tggctgaggt taagaggagg caggagcgtt cagcgaataa tgtggtggtg      1020
     atctctgacc tggcctacac ccaggagaca tcactgcaac tcctggcttt taccgtcctg      1080
     gctgcactgg attccacggt cctaaggcgg gatgttgcaa ccgtcagaac catggggaga      1140
     cttgacgcaa ccaccaccaa cgcgcaaggt gacagcagat tcccaccttt agctgtcact      1200
     ctctcttcca gtgcgctggc ccgctccatc atcgtggcca aagccaggaa acgcaagctt      1260
     cacactagtg aactggatgc tgccctactg gaggaagcga gagctctctg cccagatcat      1320
     cagggactta ttaacatcaa tgagctgctt cctccagaca tccacaagct gcgcatcaag      1380
     gccaggctag aggcaaagag gagaagggga tgccgctcct tcgtgaggga cggaaggatc      1440
     tacatccgct ctggcgaaga cagtgaacgg gccactatca tctctactga tgctgaactt      1500
     gaggcttttt tagcccatac gccgccaata gccaacacgg acatcacaca ctaagacaca      1560
     cacctattat cccaccaaaa ccaccatcta aatcatctaa ctcatcyaca tctgcttcta      1620
     aagcgtctct gtctgagggt ctgagagtct gtcatttcaa tgcgaattcc cttacgggtc      1680
     acattgagat ggtcaggctc ttcttgtcca ctcgttcccc ctttcacgta atagctgtaa      1740
     ctgagacctg gctgagcgac aagataacat ccatcccttc actggatgat tacatattgt      1800
     acagacggga cagaaacaga aacggtggag gtgtggccct ctacattcat cattcattga      1860
     cagccagcgt tatctcgtca tctgacggcg aatggtcggg caagccgggt aagccggagt      1920
     atcttttctg tgagatctca gctaagggag tatcgcccat cttcgtgggg gttgtgtatc      1980
     gccctccgca ctcacccttt atccagggat ctaatttcat tgagcaacta acaacgcata      2040
     tgcacaatta ctccacgaag gtcatcatgg gtgactttaa ttccgatcaa ctttcctcat      2100
     ctgaagacgc caacttcatc agggccttca ttgatgagaa ctctcttacc tctgtgccat      2160
     atggtgcaac ccatcacaga caggactctg acacctggct tgacctatgc ttaattgatg      2220
     agcaggattg cctgctctca cactggaaga cggacactcc tttcatcaac ggacatgacc      2280
     ttatcacggc cacactcgac gtacagattc cacgccacgt acctgctaca tactcttaca      2340
     gaaactacaa aggaatctgt gctgagaagt taagggactt ccttagcgca tgtgactggt      2400
     catccttcac cacgtcatca cttgacgaat gcattaccat tcttaacgct aacttaacga      2460
     acgccataaa tcatctcgcc ccattaaaga ctgtgacacc aggacgtaaa cgtcacccgt      2520
     ggttcaccgc ggctcttcgt gaccttttga ctgaaaggaa cagactctac aggcgttttc      2580
     gcaaaagtcg tttaccttgg gatctatact tctatagaat cgcaagggac gacgctcata      2640
     aacaggttga ggaggctagg ctgaattact actattcacg cttgtctacc ttgaccgacg      2700
     ttgcagagat ctggagagag cttgaaaatc ttggcattac cacctctaaa tcaccttcac      2760
     ctgctcggtt ctcttcagat gctctcaaca aacacttcag ttccatctct aatgaccctc      2820
     aagctccatc tgttgaggag tatctgcgaa ccctggagag tctggacctc cctgaacact      2880
     tcatcttcag ggctatcaca gagtcggatg tgtcggctgc tgtatcacac tttaacaccc      2940
     aggccagggg aagcgatggc atcccacagg ttgtaatctc caaagcactg ccaatactcg      3000
     ctcctctact atgtcaaata ttcaacctgt ctctgagcga ggcacgcttt ccctccgcct      3060
     ggaagtcgtc gctcgtaaga gcactaaaca aagttaactc tccaacagct ttaactgact      3120
     accgtccgat ctctctactc tgtttcctgt ccaaggcgct ggagtggctg gtgcacaagc      3180
     aaatctctga atatcttgaa acaagacttt accttgacaa tttccaaact ggctttcgca      3240
     ctggccacag cacgcagtct ggcttaatta agctgactga tgatgtcagg cttgggatag      3300
     acaggaagaa agtcactctg ctacttctat ttgattttag caaggcgttt gatactgtgt      3360
     gtcacgtcag gctactcgga aagctatcct ctttcggctt ttctaagcag gttatccgct      3420
     ggcttgcatc ttacctctcg ggaagagaac aggccgtcat tggtgacaac aacgaactct      3480
     ccacctctct accattaaac accggtgtcc cacaggggtc agttttaggc cctctgttgt      3540
     tcgcgttgta catcaatgat attggcttct gtctagattc agatgtgtcc catctaatct      3600
     atgcggatga cctgcagata tacagctaat gccaccttga ggagctcgat tcctgttctg      3660
     tcaggatgag tgctaacgcc gaaaggataa tgggctgggc tgcactaaat cgacttaaac      3720
     tgaatgtcct taagactaag gcaatcgtcc tgggttcccc ctactatata aatgcattac      3780
     cttctattgc taacaccttt ataaatatag ggggagcccg ggtcgactat gaatcatctg      3840
     tgcgcaatct ggggttggtg cttgactcca aacttacatg gaaagagcac gttacacaaa      3900
     tatgtaaacg tgctcactct ctgatgtacc ggctctattt ttttcggaag agcactaact      3960
     tcaggctgcg ccaacaccta gtgcaagcac tcctatttcc catcatcgac tattgctcac      4020
     tggcttactg cgacctgaca caagaactgg acacgaaact gcagagactt gtcaacacgg      4080
     ggatccgtta tatctacggt gtaaggaggg acgagcacat ctccccttac aggcgtgagt      4140
     tgcaatggct taccaccgcc gggcgtagga aatacttcat ggcctgcttt ctaagaaaaa      4200
     tttttaacac ttcagtgcct acctacatat tagccttttt tgatttccac gtcgcgctca      4260
     ggcctgtgag gggtgaggtg acccccctgg atatcccgtc cttcaagacg gagacgctga      4320
     a                                                                      4321
//
ID   L2-6_Hmel   repbase;    DNA;    INV; 2492 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2492
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           370..2142
FT                 /product="L2-6_Hmel_1p"
FT                 /translation="NTQFFSRSDFKIFKVLGIGKLXSSSINPDLNLNVLNM
FT                 HFSXSSALDISVKSCTLSEIHSLPKINLPTFTFSSISDNDTKKTILAISSK
FT                 AVGSDDISRGMITLILHILVPVITHIINFSFSSSQFPVMWRKAFVLPLPKI
FT                 SNPTLPSHFRPISILPFLSKILESTAYQQISRHFSKYNLLNPLQSGFRTGH
FT                 STTTALLRVTEDVRSAMENKHLTVLILIDFSNAFNAVDHDLLIALLSCANV
FT                 SSTALQWFSSYLQGRRQSVRVGQTSSDWHDVTAGVPQGGILSPLLFSLFIN
FT                 SITSVITSRYHLYADDLQLYEHASVDNIVGVVNSLNNNLRNISIWSSKYGI
FT                 NVNPDKCQAIIIGSSRQLAKLDYSKLPNLTYNGTVINFTTTVKDLGIIIDN
FT                 KLTWSNHVADMSRKIYASLHSMVRLKNFLPVQTKLQLVNTLLLPIIDYGDA
FT                 CSLDMNKELVNKLERILNTCIRFIYNLRKYDRISSYRRQLGWLSVADRRKS
FT                 RVLCLLYSILFNPQSPTYLSSDFSFLSSFHDTSLRSQSNFMLSTPRHTSGF
FT                 MSDSFAVAGVRLWNELPEPIRKAPSREVFKRRVKEYFFKNNINI"
XX
SQ   Sequence 2492 BP; 695 A; 533 C; 394 G; 859 T; 11 other;
     aaagtaacca caaactcttt caattagaag tttcaacaac ctcaatcatg agaagcttaa        60
     gagcgatgct tcctgcattg actggtcggc gatcgaagtg ttgtgttcga tcgatgagaa       120
     agttgatctg ttgacctcaa acataactgg attgtttgac aaacatgcac caattcaact       180
     catccgaatc aaaaaccaac cagctttatg gtttaacgac gattttcgta aagccagggc       240
     taagcgagat agggcttttt caaaatttaa aaacaatcga tgtgatctca attggtccat       300
     ttataaggct gcaaggaatc agtgtaacca gttgggtaga aaattaaaac gccaatacat       360
     ctttaataaa atacgcaatt cttctcccga agcgacttta aaatttttaa agtcctcggt       420
     attggcaaac tttyatcttc ctcaattaat cctgatctta atttgaatgt cctgaatatg       480
     catttttcaw catcttctgc ccttgatatt agtgttaaat cctgtactct ttctgaaatt       540
     cacagtytgc cgaaaattaa cctccctacc tttacctttt cttctatcag tgataatgat       600
     accaagaaaa ccattctagc tatctcctct aaagcagtag gatctgacga tattagtcgt       660
     ggtatgatca cccttatttt acacatcctt gttcctgtaa taacccacat tattaatttt       720
     tctttttcct ctagtcagtt tcccgtgatg tggcgcaagg catttgttct cccacttcct       780
     aaaatatcta atcctacgct accgtcacat tttcgtccca tttctatcct acctttcctc       840
     tctaaaattc tagaatccac cgcttaccaa caaatctcta ggcatttttc taaatacaat       900
     ctattaaacc ctctacagtc cggatttaga actggtcaya gcaccactac tgctttaytg       960
     agagtcactg aagacgttag atcagcaatg gaaaataagc acttaactgt gcttatttta      1020
     atagatttca gtaatgcatt caatgccgta gaccatgatc ttcttattgc actcttatcc      1080
     tgcgctaacg tctccagcac agctttacaa tggttttcgt cttatcttca ggggcgtcgg      1140
     cagtcggttc gtgtaggcca gacctcttct gactggcatg atgtgacagc tggtgtccct      1200
     caaggcggta ttctatctcc tcttcttttt tcattattca ttaactccat cacttccgtt      1260
     ataacctctc gataccatct ttatgctgat gacttgcagc tttatgaaca cgctagtgta      1320
     gataatattg ttggtgttgt taattctctt aacaataatc ttcgtaacat ttcgatttgg      1380
     tcgtccaaat acggaataaa tgttaatcct gacaaatgtc aggctataat tatcggcagc      1440
     tcgcgacagc tagccaagct cgattacagc aaactgccca acttaacata taatggcacg      1500
     gtcatcaatt tcaccaccac tgtaaaagac ttaggtatta taattgataa taaattaact      1560
     tggagcaatc atgtggcaga tatgtcccgc aaaatttacg cttccttgca ctcaatggtg      1620
     cgcctcaaaa atttcttacc tgtgcagacc aaactacagt tggtcaatac cttgctgctt      1680
     cctattattg attacggtga tgcttgctcc ttggatatga ataaagaact ggtaaacaag      1740
     ctcgagcgga tactcaacac ttgtatacgc tttatttata acctccgcaa gtatgaccgt      1800
     atatcatctt ataggaggca gcttggctgg ctttctgtgg ctgatcgcag gaagtctaga      1860
     gtcctttgtt tactttactc catcctcttc aatcctcagt ctcccactta tctatcttct      1920
     gacttttcct tcctttcctc tttccacgat acatccttac gttcccaatc caattttatg      1980
     ctgtccacac cccggcatac gtcagggttc atgtctgact cctttgcggt cgccggtgtc      2040
     aggctatgga atgagctacc cgagcccata agaaaagctc cctctcgtga ggtattcaag      2100
     cgccgggtaa aagagtattt ttttaaaaat aacataaata tataatattc atctatttaa      2160
     ttaattgtat atattggagt atatatggta tgctatattr ttatatkrtt twtattktta      2220
     tgtatttttt tttatttctt ttatttataa tatccgtaat attttattat aattatatat      2280
     tatatgtata actatttatt atatgtatat ttatatattt attggatgtg tatgtatgta      2340
     tatgtatgta tattttactt ctgcacacct gcatactyat tatcccacat gacaaggtcg      2400
     gctgggagag aatgctttta gcgttaagcc cgccttttgt acattgtttt tttgtaattt      2460
     tgtgcaataa agtatatata aataaataaa ta                                    2492
//
ID   L2-6_NVi    repbase;    DNA;    INV; 5247 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-6_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5247
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 756-756 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(884..1963,1967..4906)
FT                 /product="L2-6_NVi_1p"
FT                 /translation="MPVCRKCGRNIVTRAVSCYQCGLDFHAGCLARFVKSK
FT                 SCSGCCLKTHKALSTPPDITSLPSRCERDSIFDAGRDLGSTSLLDISDLSI
FT                 ASLSSEFTRSADPASLTENRLDDSSSHSLPCSSTMSTPSNWNAMSVDDKLG
FT                 ELFNVITSGNTALSSKIDALAAKVDNQESRVTLLENENAKLTKEVASLKER
FT                 FDKSCKYAEIKVSGIPPTCQASLHDITRAIFTKLNVANYITDVHSVRAIVS
FT                 RPQSNAAEASQLSSQRAPRPLVFCIRFKSFCVRDDVLRAKRLFGPIKFSDI
FT                 YPGGSDTSIDMHDMLSPFLHNLRLAVKTRANALGYKYVWVRDDKILVRKAD
FT                 GSEIIPIITANDLERMVQSEASIPKTVSAPARKSSKIRIAHLNVSSVKAHF
FT                 NEIEILLSDNSIDVLIITETWLTPSMQSSLFSIPGYNFIRNDRGLVSSRIL
FT                 NPATEDDVTYVLGGGIGFYIREDLRFTLLEASYISNINETEYMLISVDCGS
FT                 KILLGGVYRRPKGHTLSKFFNSLQNHSHRFGNVVVAGDLNSDLLSDNYYGN
FT                 HLRNLINENNFHFVPFGATHHTDSSDTVRIDVMLSDCGDKIMHYEKSAAPY
FT                 INGHDYLLIDFTFDLPEKQELLIISRDFRRFSSAAFLADLLPDLSLPAFSD
FT                 PLASVNDKLVGFQQVACRALDIHAPFTARKPNRNATPWFTPDLKRRCKARD
FT                 RLYSAAKLSRKRAAIIRYKTARIEVKRAIRSAREEYLLHGCSVRTKCWGFL
FT                 RRNGLVSAKSKSPLHFFDKDTLAKYYSSVTCAHLVCSSDSLRAILDGQYNS
FT                 LGSAFEFRFRNLDCVEVAQFMRACLSKAKGRSCDELSLSYFEQVIPQIAPF
FT                 FTEVFNLSISSGVYPSIWKKSVIVPLSKCSTPSSPGDTRPVANIPHFAKVF
FT                 DKIITDQVIAYLEDNNLISPYQSGFRSNYSTQTALLNVTEDIRRGADMGLL
FT                 TLLLLFDFRRAFDSIDHATLLAKLKSIGFSNDAILWFHSYLTGRSQAVVGL
FT                 DGTLSDFLPNTSGVPQGSSPGPVIFLIYINEIVSVLRHCSKSCMLFADDLQ
FT                 IYIQCAPGDIGRAVASLNEDASCILKWSQDNGLLLNVAKTKAIIVGSTQHH
FT                 MRLDLQRIEPIVVDGVPIPFDDSVKNLGVILSKTLSWNAHVSRTYSNAHFA
FT                 LYRLRFKGYCLPTSLKTQLVNALVLPYIDYACLVYMDLPDYLAIKLQRLCN
FT                 SAVRFIFFLRKDAELGPYYAKLGWLSLNHRRNYYLGITLYKIFVHKRPGYL
FT                 ADLFALPNEDLRRSVRNNPSAFVIPTARTEIFRNSFTVKGMHFWDSIPTTI
FT                 RLSKSLGAFKQRLYVYLLSLQQCYVHY*"
XX
SQ   Sequence 5247 BP; 1193 A; 1151 C; 1102 G; 1800 T; 1 other;
     cggtgcgagt ttctgtgtat tacaggcggt gtgggaccgt tatggctcct tttggaaata        60
     aaattcaagc actgtcattt tgctgttgag ccatggttct gcactttgcc tgacgaaaag       120
     ttttgaggtt ataccacttc gccattacta ctcagcccgc ttgctcgctg ccgaccttcg       180
     ctcgttcatg actgtcatcg ttaccgtccg ttacaccagc aaggaccgac cgaagcctac       240
     tgttctgcac cagcccggtg aattatgacc gtctcctgac tcttctttgg ctgtgtgcga       300
     gtgaggttcg tacgtgcgtt caggcgtgat ttgtgcggtg agagagagct ctagtgcagg       360
     catcctagcc actgaatctc ctttggcccc tatgcgtttg cttttgtcct agcgaattgg       420
     cctttcttgt tggtcacttg ctcttttttt tctttttctt ttctttcttt ctcgttcgca       480
     tgtggcgcaa gttcaatgcc cgattacgta acttgtttac ttcaccgagg cctgtgttcg       540
     tgaaagcatc atcttttgtt tggcgcgaat ttgaaatgcg tttgtaaacc tactcaattt       600
     cgtcgaactt ggcgagtgtt cttaaagttg atcatttttr tttggcgcga aatttcactg       660
     cgttcttaat tgattgattt ctattaataa gttaaattga tcttttttat ttgcatttgt       720
     tgcgtttttc actgcgtttt tcgcttttct tttttttttg tttatatttt tgcgctttgt       780
     tatagttttt attttaatag ttgtaattat tgcgtttatt tataagtttg cgttttattt       840
     ttaagtttcc gttttattta tattaatatt catatgcgta ttaatgccag tgtgtaggaa       900
     gtgcggtcgt aacatagtta ctcgagctgt ctcgtgctat caatgcgggc ttgattttca       960
     tgctggttgt ctagcacgtt ttgttaagag taagtcctgt agtggatgct gccttaaaac      1020
     tcataaggca ctttccacgc cacccgacat cacttcgctt cctagtcgct gtgagcgcga      1080
     ttctattttt gacgccgggc gcgaccttgg ctcgacatct cttctcgata ttagcgatct      1140
     tagtattgct agcctcagtt ccgagtttac tcgtagtgct gaccctgcat cgttgactga      1200
     aaatcggttg gacgactcta gttcgcattc tctcccttgt tcttccacaa tgtcgacgcc      1260
     ttctaattgg aatgcgatgt ctgttgacga taagcttggc gaattattta acgtcatcac      1320
     ttccggtaat accgctctta gtagcaaaat tgatgcgctt gctgctaagg ttgacaatca      1380
     ggaaagcaga gttaccttgc tagagaacga gaacgcgaaa ctaacgaaag aggttgcgag      1440
     cctaaaagag cgttttgata agagctgtaa atatgcggag attaaggttt cgggtatccc      1500
     gcccacttgt caagcttctc ttcatgacat cactagggct atttttacta agctaaacgt      1560
     cgctaattat attactgacg tgcatagtgt tcgtgcaatt gttagtcgcc cgcagtctaa      1620
     tgctgctgag gcttctcagc tttcgtctca gcgcgcgcct cgcccacttg tgttctgtat      1680
     tcgttttaaa agtttttgcg tgcgcgatga tgtcttgcga gcgaagcgat tatttggccc      1740
     aattaagttt agtgatatct atccgggcgg tagcgataca tctatcgata tgcacgacat      1800
     gttatccccg tttctccata atttacgctt agctgtgaaa acacgtgcaa atgccttagg      1860
     ctataaatat gtttgggtac gtgacgataa gattttagtt agaaaagcgg atggttcaga      1920
     aatcattccg atcatcactg ctaacgacct ggagcgcatg gtttgacaat cagaggcgag      1980
     tatccctaag acggtctcag cacccgctcg taaatccagc aaaattcgca ttgctcacct      2040
     caacgttagt tctgttaagg cccacttcaa tgaaatagaa attcttttat ctgacaatag      2100
     tattgacgta ttgattatta ctgaaacctg gcttactcca tccatgcagt cctcactttt      2160
     ttctattcct ggctacaatt ttatccggaa tgatcgaggt cttgtctctt cgagaattct      2220
     taaccctgcc actgaggacg atgttacgta tgtccttggt ggtggtatcg gattttacat      2280
     acgtgaggat ctgcgtttca ctttattgga agcatcttat attagcaata ttaatgagac      2340
     cgaatatatg cttatcagtg ttgattgtgg ttcaaaaatt ttgctcggcg gtgtttaccg      2400
     tagaccaaaa gggcatactc tttctaaatt cttcaactcg ttgcaaaatc attctcatcg      2460
     gttcggcaat gttgttgttg cgggagatct taactccgat ttgctctctg ataattatta      2520
     tggcaatcat cttcgtaatc tgattaacga aaataatttt cactttgtcc cgtttggtgc      2580
     tactcaccat accgatagtt ccgacactgt ccggattgat gtcatgttat ctgattgtgg      2640
     cgacaagatt atgcactacg aaaaatccgc tgctccatac atcaatggtc atgattacct      2700
     cttgattgat ttcacgtttg atctcccaga aaagcaagag ttgctgataa tatcgcgtga      2760
     ttttcgaagg ttctcgtcag ctgcttttct ggctgacctt ctgcccgatc tctccttgcc      2820
     ggctttctct gatccgttgg cttctgttaa cgataagctg gttggttttc agcaagttgc      2880
     gtgcagggct ctagacatcc atgcaccgtt taccgctaga aagcctaatc gtaacgctac      2940
     cccgtggttt acaccggacc ttaaacgccg atgtaaagcc cgcgatcggc tgtatagtgc      3000
     agcaaagctt tctagaaagc gggctgctat tattcgctac aaaacagctc gcattgaggt      3060
     aaaacgtgcc attcgaagtg cacgcgagga gtatttacta catggctgct ccgtgagaac      3120
     gaagtgctgg ggctttctac gtcgtaatgg cttagtttca gccaaaagta aatcacctct      3180
     tcattttttc gataaagata cccttgcgaa gtattattct tctgtcactt gtgcccatct      3240
     agtatgctcg tccgattctt tacgtgctat ccttgatggg cagtataata gtttaggttc      3300
     cgcgtttgaa tttaggttta gaaatttgga ttgcgttgag gttgcgcagt ttatgcgagc      3360
     ttgcctttcc aaggccaaag gtcggagttg cgatgagtta tccctatcat attttgagca      3420
     agttatacct cagattgccc cgtttttcac ggaagttttt aacctgtcga tttcgagcgg      3480
     tgtctatcca tctatctgga aaaagtcggt cattgtgccg cttagtaaat gctcgacacc      3540
     cagctccccg ggcgatactc gtccagttgc gaacattccg cactttgcca aggttttcga      3600
     taaaataatt actgaccaag ttatcgcata ccttgaagat aataatctta tttcgccgta      3660
     ccaatctggg tttcgtagca actacagcac gcaaacagcg cttctgaatg tcacggaaga      3720
     tatcaggcga ggtgcggata tgggtctgtt gaccctgctt cttttgtttg atttcaggcg      3780
     tgctttcgac tcgattgacc atgctacttt gcttgctaag ttgaaatcga tcggtttttc      3840
     taatgacgca atactatggt tccactcgta tctgactggg cgttcacagg cagttgttgg      3900
     cctcgatggc accctttctg attttcttcc taatacgtca ggtgtacctc aaggatcctc      3960
     tccaggacct gtgatctttc tcatctatat taatgagatt gtctcagtac ttcgacactg      4020
     tagtaagtcg tgtatgctgt ttgccgatga tctccaaata tatatacagt gcgcgcctgg      4080
     cgatattggc cgagctgttg catcccttaa tgaggatgcc agctgtatac ttaaatggtc      4140
     tcaggataat ggtctcctct tgaatgttgc caaaacgaag gctataattg ttggatcaac      4200
     ccagcaccac atgcgtcttg atctgcagcg aattgaaccc attgtcgtgg acggagtacc      4260
     gattcctttt gacgattccg tgaaaaacct gggcgtaatc ctttctaaaa ctctctcttg      4320
     gaatgctcat gtatctcgca cctactctaa tgcgcatttt gctctttatc gccttaggtt      4380
     taagggttat tgtcttccta ctagcttaaa aacccaacta gtcaacgctc tagttctacc      4440
     gtatattgac tacgcttgtc ttgtttatat ggaccttccg gattaccttg cgatcaaatt      4500
     acaaaggctg tgtaattctg cggtacgctt tatctttttc cttaggaaag acgctgagct      4560
     tggcccctac tatgccaaat tgggctggct atcacttaac catcggcgca attattattt      4620
     aggtattacg ttgtataaga ttttcgttca taagcggcct ggttatcttg ccgatttatt      4680
     tgcgctacct aatgaggact tacgacgctc ggtcagaaat aatccgtctg cgtttgtgat      4740
     accgactgct aggaccgaga tttttcgcaa ttcatttacc gtgaaaggta tgcatttctg      4800
     ggattctatc cctacaacta ttaggctaag caaatccttg ggcgcattta aacagcgcct      4860
     atatgtctat ttattaagtc tacagcaatg ttatgtgcat tattaatatt tttagattag      4920
     gttataagat gttactgcga gcttactact cagttttctt tgctgccttt aattggtgag      4980
     ccgtttacta ctggttaaga gagatattat tattttgttt ttccattatt ttgtttacga      5040
     tttgcaactc tttattttgt aatacattag cttaagtcta ttattgtatg ccaaatattg      5100
     gccactgctg tgccatcgaa aaatttgtta taagttgcca tctttatttg tatttctatt      5160
     cctgctatgc tgtattattt gctcctcgcc ctacggcctt ttggtcacgg cgttaataaa      5220
     tctgtttatc aatcaatctc tctctct                                          5247
//
ID   L2-7_Hmel   repbase;    DNA;    INV; 2229 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2229
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1825
FT                 /product="L2-7_Hmel_1p"
FT                 /translation="CSKTCRDAQRKFIHSTIENNSPAKVWKXLDAMGIGRT
FT                 RKTINISDKINLDEINXHFSNVNLLNQEIKADTIKSISDISCPSPFYFSSV
FT                 STDDVKKHVLAIKSDATGSDQISRKMILLTLNPVLPVLCHIFNHSLSSNSF
FT                 PNTWRQAIVTPIPKVPNPLSFSDYRPISVLPFLSKVLERIVHHQLSSFLAL
FT                 NKILSPFQSGFRPGHSTVTALNKVNDDIRLGIDNQQITILVLLDFSNAFNT
FT                 VDFDILLAILQSINVSSETTEWFYSYLHEREQSIYINDKRSSVCRLSAGVP
FT                 QGGVLSPLLFSIFINSVTKLLSLSFHLYADDLQIYMTTDVNDIVKAIDAIN
FT                 FNLRTISTWSKSFGLSVNPKKSQVCILGNPKQLSKLHFPSLPPXIFDNCKL
FT                 EYRXTVKNLGIKVDSSLSWAPHISDLSRKVYYTIGRLKRWKYLLPTQTKIS
FT                 LAHSLLLPILDYADTCYLDLSQQLLNTLERLQNLVIRFXFGLKKFDHISQH
FT                 RVRLQWLSVKDRRNLHTVTLLYSILFHPDTPIYLKERFSFLGSNSRLPPTL
FT                 RSKSDNVLETPLCRTHCYSKSFTVEAVKLWNALPRNIRQSTSINIFKKRVK
FT                 NYYLGMESSN"
XX
SQ   Sequence 2229 BP; 612 A; 469 C; 346 G; 793 T; 9 other;
     atgtagtaag acttgcagag atgcacaacg taaatttatc cattccacta ttgaaaataa        60
     cagccctgct aaagtgtgga aattnctaga tgcaatgggt attggacgca cacggaaaac       120
     tattaatata agcgataaaa taaatcttga tgaaattaac aancactttt caaatgttaa       180
     cttactgaac caagaaatta aagcvgacac tattaagtca atttccgata tctcctgccc       240
     ttctcctttt tatttctcct ctgtttctac tgatgacgtg aagaagcatg tgctggccat       300
     taaatccgat gctactggta gtgatcaaat cagtcggaag atgattctct taactctcaa       360
     ccctgtactc cctgtcttat gccacatctt taatcattcc ctttcctcaa actcttttcc       420
     caatacctgg cgccaagcta tagtaactcc tattcctaag gtacctaatc ctttatcttt       480
     ttctgactat cgccctatct ccgttctccc atttttgtca aaggtgttag agcgtatagt       540
     ccatcatcaa ctttcatcct tcttagcttt aaataaaatc ctatccccct tccagtctgg       600
     atttcgccct gggcacagca cggttacggc attaaataaa gtaaatgacg acattaggtt       660
     gggtatcgat aatcaacaaa ttactattct tgtactgctg gacttttcga atgcttttaa       720
     caccgttgat tttgatatcc tcttagcaat tcttcaatct attaatgtat cctctgagac       780
     tactgaatgg ttttactcct acttacatga acgcgaacag agtatctata ttaacgacaa       840
     acgttcatct gtatgtcgtc tcagtgctgg tgttccccag ggtggagtgc tctctcctct       900
     ccttttttcc atatttatca actccgttac taagcttcta tccctttcct ttcacttata       960
     tgctgatgac ctacagattt acatgactac ggacgttaat gacattgtta aggcgatcga      1020
     tgcaattaat tttaatctgc gtactatcag tacctggagc aagtcatttg gtctgtctgt      1080
     aaaccccaaa aagtcacaag tatgtatcct cggtaatcct aaacaattat ctaaattaca      1140
     ttttccttct cttcctcccr ttatctttga caattgcaag ttggaatata gawgtactgt      1200
     caagaatcta ggtatcaaag tggacagctc tctctcctgg gctcctcata tctctgacct      1260
     aagccgtaaa gtatactaca ccattggtag gctcaagaga tggaaatatc tkttaccaac      1320
     tcaaactaaa atatcactgg cacattcact cttattgcct atattagatt atgctgacac      1380
     ttgttaccta gatttatcac agcagttgct caatacgctt gaacgcctgc aaaacctagt      1440
     tattaggttc rtttttggac taaagaagtt tgatcacatc agtcagcatc gcgttaggct      1500
     tcagtggctt tctgtaaaag accgacggaa tctycacact gtcacgctcc tctactctat      1560
     ccttttycat cctgatactc ctatttacct taaggagcgc ttttccttcc taggctccaa      1620
     ttcccgcctt ccgcccaccc tccgctcgaa aagtgacaat gttttagaaa caccattgtg      1680
     ccgtacccac tgttacagta aatcgtttac tgttgaagca gtaaaattgt ggaacgcgtt      1740
     accacgaaat attaggcaat ctacctctat aaacattttt aaaaaaagag taaaaaatta      1800
     ttatcttggc atggagagta gtaattaatg tgtgctaatt tattttccct ttatttattt      1860
     atttgctata tatcttacgt atataatcag tgtatgtata agaatttgtg tatgtttgtg      1920
     tgtatatgta tgtatgtata tatatgtgta tgtatgagtg tatatatata tgtgtatgtg      1980
     tgtatgtata tattatataa tttaattatt tattttattt ctttgttttc ttatttattt      2040
     atttagttat ttttcgcgtc actttgcacc gcattatgcc cgcactttta attatatcct      2100
     tccgtaattt ggttgcctgg aagagatcac ttgtagtgat aaggccgcct ttgtgcattt      2160
     tgttttaaga atttattgta ttgtatcttt ttaagtgtgc aataaagatt tttatctatc      2220
     tatctatct                                                              2229
//
ID   L2-7_NVi    repbase;    DNA;    INV; 4786 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-7_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4786
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 757-757 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(457..774,695..1495)
FT                 /product="L2-7_NVi_1p"
FT                 /translation="MVKCRKCSRNVATVSKSCTTCGSTFHPRCHVTFLIGK
FT                 PSDTCCKALVTLAADTQVEPTLTVQNHPSSIAALTSDSPSPLSFAATSEAG
FT                 KKLRRKALATIAIRAARVVLRRPPRQAKSFAEKLSPPSPSELLASKQTRRE
FT                 FSSSSESSNDSHNMPDSAADEAPAWFKAYLTEYRNDKAEVNQRLNNLETGM
FT                 RKTVSSVVRNIALVDSCEITISGLPPDTSIQPRELARKVFAAIELEWLLNF
FT                 VIRFRDWPQKAQANEASTSSRTEPGSRTIVVKLMSAPLRDSALENASLLDK
FT                 TSAQALFGSGGARKIYINPLYPKPVYLLRKKAMRVAKQLNYARPVVQNLVV
FT                 CMRQTKESPLIPIVSEEELAALEPYRPQQ*"
FT   CDS           join(1496..3406,3325..3642,3566..4396)
FT                 /product="L2-7_NVi_2p"
FT                 /translation="RPASGPNSSGPLDSINIGHINVNRLASHFALFEEHCT
FT                 TSHFDVIGVTETFLSVADPDDQLTLSGFNFFRVDREGQAGGGVAFYARDFF
FT                 KVKILAHSGGNIPEFVIAELIYNNFKLLFAVVYRRPNSAHPSHFFQCLAPL
FT                 LPHYLNAVVTGDFNADMCTLNANSNNLRSSLESLSLYLVPSEPTHHVFRYD
FT                 RPPSHTWLDLFIVNCRDSVVALRKSDSPFIAGHDFIELTIRAAKPPACEKV
FT                 IMCRNLKKVDPAVISAALCDILAPLANPFQHGQNRFLTASPTLPVTLGPCP
FT                 ADTDVFQRHITSALISTYDAVAPLRRITLSSRRKPWVSPAIKALMKRRDAA
FT                 HGLARSSGIHSDFERFRALRSEVSNLLDTAKNEYLAGRLVSAPDSNSKWRE
FT                 LRSMYITSPRLPSPLLYFDADVLNRHYAAIVNRHPPLSEEVFQVLFDSPLA
FT                 EPAADRVFDLRPVTLAEVRDSVLNASSKASGVDGISVPMIKAALPGVLDHL
FT                 TDLVNACILNGTFPTDWKKALIVPLAKSKTLTSPSDTRPIAQLPELSKVLE
FT                 RLVHSQLTSYLEAHRLLDPRQAGFRAGHSTQTALLGVLDDIRRGIDDRKLT
FT                 ILILFDFSKAFDSIPHAKLLAKLKAMGSESARFAFFLTILDPACKTVGQTK
FT                 SNGIRERSLRFFFNYLADRFQAVIDKGGTASDWLRASSGVPQGSVLGPLLF
FT                 AVYINDLPRVLQFSRHMIFADDTQIYHQCYPNELPSALAAVQASSPTTRRF
FT                 IINVTRMNCPAPWQRCKPNLNKCKAMILGSQFYVSRVDLPTLPKITVGGVR
FT                 LDYVSEACNLGVWLTPSLDWQLHTTKVLRKIYGALYAPKTSERISSKAWFF
FT                 PVLTTPARYTTMSMLRGTRSCNVRRTRAPDSFLAVSRSAPMLHYRLELGWL
FT                 SVMRRREFLLGSLAYNVLAFENPIYLASGFKRITLDLSVRRSERNPPQALL
FT                 YSAPRTEALKQSFAITASSLLNSLHQAEFSPDKIGAFKRSMRAALLERDRR
FT                 DWADRVTNKGLTI*"
XX
SQ   Sequence 4786 BP; 1081 A; 1358 C; 1056 G; 1291 T; 0 other;
     ttgccggatc agtgtaacgt gtgcgagctg cgttcgcaga taattgtgct tttgtaggtt        60
     agagtacctg accacgtggc aactgaattt tgcatttctt gcttttccag tgtaacttct       120
     cacggagtgt gtgcctatcg cccttgccag cttcgctgtg cccactaaaa tttgtttatc       180
     gcttgtatac tacctaaaaa cgcccccgta gaaattttgt tttgcctgac cgtacgctta       240
     cccgtatcac tgtgtatacg ggtgtaaaag ggcactgtag taccgacgtc tgaccgctag       300
     cagaccacgt tcacttgtca ctcgcaacct ttgttttcag gcttttttct ggactatttt       360
     tagtttttct ttcttcgggc gcacatttac ttagttttat ttttaatttt atttcgtatt       420
     actcgcactt ttgcctcaaa cctcctagcg ctactgatgg taaagtgtag aaagtgttcg       480
     agaaatgtcg ccactgtttc taagtcttgc acgacttgcg gctctacttt tcatccgcgg       540
     tgccatgtga cttttcttat tggaaagccg tccgacacgt gctgtaaggc cctcgtaacc       600
     ctagctgctg acacacaagt cgagcccact ctgaccgtgc aaaaccaccc gtcgagcatt       660
     gcggccttaa cttccgattc tccttcaccg ctgagttttg cggcgacctc cgaggcaggc       720
     aaaaagcttc gcagaaaagc tctcgccacc atcgccatcc gagctgctcg cgtctaagca       780
     gactaggcgc gaatttagtt cttcttccga aagttcaaac gacagtcaca acatgcccga       840
     ttcagccgca gatgaggccc cggcctggtt taaagcctac ttaaccgagt ataggaacga       900
     taaagccgaa gttaatcagc gccttaacaa cctcgagact ggcatgcgca aaactgtatc       960
     cagcgttgta cgaaacattg cgcttgtaga ttcctgcgaa ataactattt ccggacttcc      1020
     gcccgacacc agcattcagc cgcgcgaatt ggcacgcaaa gtattcgcgg ctattgaact      1080
     tgaatggctg ctcaacttcg tcatccggtt tcgcgactgg cctcaaaagg cccaggccaa      1140
     cgaagcttca acctcgtcgc gaacagagcc aggatcgcgc acaatcgttg tcaagctcat      1200
     gtccgccccg ctcagggact cagcgctaga aaacgcgagc ctccttgata agacctctgc      1260
     gcaagcgctt tttggatctg gaggtgcaag gaaaatttat attaacccgc tgtaccctaa      1320
     accggtgtat ttactgcgca agaaggctat gagggtggct aaacagctca attacgcacg      1380
     tcctgttgta caaaacttgg tagtctgtat gcggcagacc aaagagtctc cgctcatccc      1440
     gattgtatcc gaggaagagc tcgctgccct cgagccctat cgtccccaac aatgacgtcc      1500
     agcctccggg cccaacagct ccggacccct cgattcgatt aatataggcc acattaatgt      1560
     taatcgcctt gcgtcacact ttgcgttatt cgaggagcat tgtacgacat ctcacttcga      1620
     tgtaatcgga gtaacagaaa cttttctttc cgtggctgat cccgatgatc agctgacgct      1680
     cagcggtttc aactttttta gggttgatag agagggccag gccggtggag gagtggcttt      1740
     ttatgcgcga gactttttca aggtcaagat tcttgcgcat tcaggtggca acattccgga      1800
     atttgtaata gctgaattaa tatataacaa tttcaagctt ttattcgcag ttgtttatcg      1860
     caggcccaac tctgcccacc catcacactt tttccagtgc ctagccccgc tcctgcctca      1920
     ttacttaaat gccgttgtaa ctggcgactt caacgcagac atgtgtacgc taaacgctaa      1980
     ttctaataat cttcgctctt ctcttgaatc tctctcgctc tatctggtgc cttctgagcc      2040
     tacacaccat gtctttcggt acgatcgccc gccctctcat acgtggcttg accttttcat      2100
     agtcaattgc agggactcgg ttgtagccct acgtaaatcc gactcgccgt tcatcgctgg      2160
     tcacgacttc attgagttga ccatacgagc agccaagccc ccggcctgtg agaaggtaat      2220
     catgtgccgc aacctgaaga aagtggaccc tgctgttatc tcagccgctc tgtgcgacat      2280
     tcttgcccct ctcgctaatc catttcagca cggtcaaaat cgttttctga ccgcatctcc      2340
     aactttgcca gtgacgctcg ggccctgtcc tgcggatacg gatgtattcc agcggcacat      2400
     tacgtcagcg cttatttcta cctacgatgc agtcgcccct cttcgtagga tcacgctgtc      2460
     gtcccggaga aaaccctggg tctcccccgc gatcaaggcg ctcatgaaac gacgtgacgc      2520
     ggcacacggc ctggcgcgct cctcgggcat ccatagcgac tttgaacgct tccgagcgct      2580
     ccgatctgag gtatcgaacc tcctggacac agctaaaaac gagtacctag caggcaggct      2640
     agtctcagcc cctgactcga actcgaaatg gcgagaactt cgttcgatgt acataacctc      2700
     acctcgccta ccatcacctc tactttattt tgatgcggat gtgctgaaca ggcactatgc      2760
     tgctatagtt aacagacacc cgccactctc agaggaagtt tttcaggtac tatttgattc      2820
     cccccttgcc gaaccagctg ctgacagagt ctttgacctt cggcccgtta ctttggccga      2880
     ggtgcgtgat tctgtcctca atgcctcttc caaagcttca ggagtcgacg ggatttcagt      2940
     tcccatgatt aaggcggcgc ttcccggagt actcgatcac ctaactgatc ttgtaaatgc      3000
     ctgtatatta aatggaacgt ttccgaccga ctggaagaaa gcccttatcg tccccctggc      3060
     aaagagtaaa actctcactt cgccttcgga cacgcgccct attgcgcagc tccctgagct      3120
     gtccaaggtc cttgagcgct tagtccactc ccagcttact agctacctcg aagcacacag      3180
     actcctagac cctaggcaag ccggctttag ggcaggccac agcactcaaa cggctttgtt      3240
     gggtgttctt gatgacatcc gcaggggcat cgacgatcga aagctcacca tcctcatctt      3300
     atttgatttt tcaaaggcct ttgactcgat cccgcatgca aaactgttgg ccaaactaaa      3360
     agcaatggga tccgagagcg ctcgcttcgc ttttttttta actatctagc tgaccgcttt      3420
     caggccgtga tagataaggg tggaactgcc tctgattggc taagagcgtc ctcgggcgtg      3480
     ccccagggga gcgttcttgg accgctgtta tttgcagtat acatcaacga cctcccgcga      3540
     gttctgcagt tctcgaggca tatgatcttc gccgacgaca cgcagattta tcatcaatgt      3600
     tacccgaatg aactgcccag cgccctggca gcggtgcaag cctaacctca acaagtgtaa      3660
     ggccatgatt ctaggcagtc aattttatgt aagccgcgtt gatctcccta cgctgcccaa      3720
     aatcactgtt ggtggtgtaa ggcttgacta cgtttccgaa gcctgtaacc tgggtgtctg      3780
     gctcacaccc tctctcgact ggcagctcca tactacgaag gtactgcgta aaatctacgg      3840
     cgcgctatat gccccaaaga catcagaaag gatctcgtcg aaagcctggt ttttccctgt      3900
     tttgactacg cctgcgcggt ataccacgat gtcgatgtta cgcggaacca gaagctgcaa      3960
     cgtgcgcaga acgcgtgcac cagattcgtt tttggcagta tcccgttccg cgcccatgtt      4020
     acactaccgt ctcgaactcg gctggctctc ggtcatgagg aggagggagt tcctgctcgg      4080
     ttctctcgcc tacaacgtcc tggcttttga aaatcccatc tacctcgcca gcgggttcaa      4140
     gcgtatcacg ctcgacctct ctgttcgacg ttctgagcgt aacccacccc aagcgctgct      4200
     ctattctgcc ccgagaaccg aggcacttaa gcagtctttc gctatcacgg catcctctct      4260
     attaaattcg ctgcaccaag ctgagttctc gcccgacaaa ataggggcgt tcaaacgctc      4320
     catgcgggca gcgctccttg aacgcgaccg ccgggactgg gccgacagag tgaccaacaa      4380
     gggcttaact atttaattat ttagatcttt gtttagccaa tcacctagtt ttcctagcca      4440
     gcccagttcg tctacatagc ataacgcgtt tatctactta tctagtagtt taatcaccca      4500
     ggcttatttg ttatttctcg tttgattaag ctcgcccctt gcgtacttcg cgcctagtat      4560
     taagtcttgc gtactttctg tcctcgagat ttatcgaagc gattgcaatt agcgctacta      4620
     caccgtattg cattctatgg actctattat actctgcgcc ttatcctact atgctacgat      4680
     tttctctgta attattataa tttactatta cactgtattt ttttcataag cacccgatgg      4740
     ggtcctaccc cagggtgaaa tatataaaca atcaatcaat caatca                     4786
//
ID   L2-8_AAe    repbase;    DNA;    INV; 5015 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5015
RA   Kojima K.K. and Jurka J.;
RT   "L2 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1404-1404 (2011).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           795..1979
FT                 /product="L2-8_AAe_1p"
FT                 /translation="MDACKACARNFVRSDRSVLCSGSCGRVFHPGCVGLNA
FT                 TNFKSWTANVGLLWFCENCRVNFNPSIMDREAIIMKTLRDLLLRLDSMDLR
FT                 VGQYGENLKVLNSLLTXSTSISRESNFSSRLQQSGMSGPTTYDPTDFHKTI
FT                 DRFNLDLSLRSNVANNSIVDANEGLDASLDNDDDCNDHQSGINSTIATTAT
FT                 TTVSAVAAAVVAGAAASATPCHVTTAATTNSADTNVVSSYASIVSRPSVAV
FT                 DTATNRNSISNNNMTHAIATHSVASTSKNVIVQDAVQDCRLRVVNRNRTLR
FT                 QRQPTSDVTMKSFYVTPFDIEQTEEDVIEYLRETMNVDNSTLNCVKLVPRN
FT                 RNVNELTFVSFKLSVSEDLVSVISDPFYWPEGVEVREFQPKNGSFPNRVVS
FT                 I"
FT   CDS           1934..4897
FT                 /product="L2-8_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="ISAKKREFSQPRSLNLINVSNSNTNVPVLSEPSLNAA
FT                 LLAPSLPESIYESKSKLHYFDYQGLKCLLKKHSTNFISIGVHNARSLICNV
FT                 ENYRELIGNSNLSVLAIVETWLKPSHTNKSVELEGYTLTRSDRNSKTKSRG
FT                 GGVAFYLKKNVKFSVIAKPENDSEIDYLFIKLKHVHLVCGVVYKPPDVNDS
FT                 KLEIVFKLLSEISSIEPNVMLMGDLNINLEAIKTSKTLNFFENLNALSFKL
FT                 LPTYPTCHKSDSSSTIDLFSGNCTHNVNNVYQSSAGGISDHDFICLDYKFK
FT                 SSKAKSEVYYTREYHKIDTDLFISDLRGVAFDQVYNCTNVNEKLRCFTKLF
FT                 VSILNSHAPLRRKLVTNPTSPWINGNISRLFKNRSDAYECWKRDKSDSQKW
FT                 KNFTRLRNLTNREVERTKKEFFASKLSADLPAKQLWKNIKRLGLKQTNTTI
FT                 GGGDVCADSLNTFFVSHNVPISFNPNNNSSELEPNFSFRCVNNDEVLKEFI
FT                 SASCDAIGVDNIPLKILKMSLCVTLPYITDIFNFCIITCEFPIDWKVAKVI
FT                 PIGKIENPVSVNDYRPISILPALSKVFESILTNQLNEYLSQENLLCPLQSG
FT                 YRKTCSTVTALIKIENDIKEALDKKMITIMALLDFSKAFDTIDHRLLCKKL
FT                 KNIFLIDNLSINLLRSYLQNRVQYVEFNFQQSETINVESGVPQGSILGPIL
FT                 FSMYINDLPSVLSYCKFHLYADDCQLYISGNHKNISDIVNLINMDIRRILI
FT                 WCEQNGLQLNAKKTQTIIFRTKRTVLTDIPLIRVNDNLINYTDVVKNLGLL
FT                 MDCNLNWNAQVNSLCKKVYNALHSLVILRHCTPLHIRVHLARSLLVPLFDY
FT                 GDVLFGLVSKKNLNKLNLVFNAVTRYAYNLKKYDHISNFRKAILGCEFTTH
FT                 LKFRMCIQTYKILNNPPPYLQNLFTYARSSRVSLLSVPHCSTNYLKESFRH
FT                 RAVKIWNELPRDCRTELGFFSFRRKTKIYLNSV"
XX
SQ   Sequence 5015 BP; 1517 A; 974 C; 939 G; 1583 T; 2 other;
     acaacaaaca accgagttca caagcaacgt tttccgaggt gttaaattat cgacgatttt        60
     ccgtgctatt ttcaatctag taattgaacc gaacgtggtt wactttgaag tattacctgc       120
     taaatagaat acgactaaag gtcaagctgt tccggcactt accggagtgc aaaagtgatt       180
     tctattttct gtaattcgct ggaggatcca attaggaaac aaaagattgt accgtctcag       240
     tcgattgtga taacgttgga tgcgttatat caacacattc acaacgtcag tgattcagtc       300
     actcagttgt ttagtactga ttccaccgtt tgttttgctc agtgttttca cacgcttctt       360
     caggagtggt gctgctctgt tggatagagt agcgtatctg ggtgcgttcg gtggtctcaa       420
     aagccgaaac actttaatcg aggcgcacgc tctggttcga tatcggcttt ggtgagaaca       480
     catttggggt acgtttgcac gctgctgagc ggtaccgtct agttggatag aggagtgtgt       540
     ctgggtgcgt ttgatagtct caaaaatcaa aacatcttca ttgacgcgca tgatctggtt       600
     caactgcggt tttggcagat gtactttaaa gagcgagacg cttggtttgc tttgggaaca       660
     cgctgtgcct gcttgaacac tgctttatag tgtctttgtt tttatatcgt tttcagaata       720
     ttacttaaat cgcactgctt aagggaagtc cattttccta actgttttct tctagtgtta       780
     gaaatttagg aatcatggat gcatgtaagg cttgcgctag gaattttgtg aggtccgata       840
     gaagtgtttt gtgcagtggg tcgtgcggaa gagttttcca ccccggttgt gtcggcttaa       900
     acgcgacaaa ctttaagtca tggactgcca atgtcggttt gctttggttt tgtgaaaact       960
     gccgagtaaa tttcaacccc agcatcatgg accgggaggc aatcattatg aaaacattgc      1020
     gtgatctcct tttacgactc gactcaatgg atcttagagt gggtcaatat ggagaaaacc      1080
     tgaaggtgct caacagcttg ctcacaatst ccacatcaat cagtcgcgaa tcaaactttt      1140
     catcaagact gcaacaatct ggaatgtctg ggcctaccac ctacgatcca acagattttc      1200
     acaaaaccat cgatcgtttc aatctcgacc tttcgctccg atcaaatgtt gccaataata      1260
     gcattgtcga tgcaaacgaa ggacttgatg cttctttgga taatgatgac gactgcaacg      1320
     atcatcaaag tggtatcaac tccacaattg ctaccaccgc tactaccacc gtttctgctg      1380
     ttgctgctgc tgttgttgcc ggtgctgctg cttctgccac tccctgtcat gtcaccaccg      1440
     ctgcgacgac taactccgct gataccaacg ttgtctccag ttatgccagt attgtgtcaa      1500
     gaccctctgt tgctgttgat accgctacca ataggaactc gatctccaac aacaatatga      1560
     cgcatgccat cgccacgcac agtgtcgcat cgacatcgaa aaacgtcatc gttcaggatg      1620
     ccgtacagga ttgtcgttta agagttgtaa accgaaaccg aactctgcgc cagcgccaac      1680
     cgacgagtga tgttacgatg aaatcgtttt atgtaactcc attcgatatt gaacagactg      1740
     aagaagatgt tatcgaatat ttacgcgaaa ctatgaacgt tgataattcc actcttaatt      1800
     gtgttaaact tgtgccgcgg aacagaaatg ttaatgaact tacgttcgta tcgtttaaat      1860
     tgtcggtttc agaagatctt gtatcagtaa tcagtgatcc attttattgg cctgaaggcg      1920
     ttgaagttcg tgaatttcag ccaaaaaacg ggagttttcc caaccgcgta gtctcaattt      1980
     gataaatgta agtaactcta acaccaatgt accagttctg tctgaaccct ccttgaatgc      2040
     tgctcttttg gctccctctc tacctgaatc aatttatgaa tcaaagagca agttgcatta      2100
     ctttgattat cagggtttga aatgtttact caaaaagcat tcaacaaatt tcatcagtat      2160
     tggggttcac aatgctcgga gtctgatttg taatgttgag aattatcgtg aattgatagg      2220
     aaattcaaat ttaagtgttt tggcaattgt tgaaacctgg cttaaaccat ctcacactaa      2280
     taaatcagtg gaacttgaag gttacacact gacaagatct gatcgaaata gcaaaacaaa      2340
     atctagaggt ggaggtgttg cgttctattt gaaaaagaat gttaaattct cagtcattgc      2400
     caaacctgaa aatgatagtg aaattgatta tttattcata aaattaaagc acgttcattt      2460
     ggtttgtgga gttgtttaca aacctcctga tgtgaatgac tctaagttgg aaatagtatt      2520
     taagcttctg tctgaaattt cctccattga gcctaatgta atgttgatgg gagatctgaa      2580
     cataaacctg gaagcgatca aaacatctaa aactttgaat ttctttgaaa atttgaatgc      2640
     tttgtctttt aagttgctcc cgacgtaccc tacatgtcac aaatctgatt cttcatcgac      2700
     tattgatctt ttttccggca attgcacaca caacgtgaat aatgtttatc aatcgtcggc      2760
     agggggaatc agtgaccacg attttatctg tcttgattat aaattcaaaa gttcaaaagc      2820
     aaaatcggaa gtttattata cacgagaata ccacaaaata gatactgatt tgttcatatc      2880
     agatctccgt ggtgttgcat ttgaccaagt gtataattgc accaacgtta atgaaaaact      2940
     ccgttgtttt accaaactat ttgtttcaat tcttaattcg cacgctcctc ttagaagaaa      3000
     attagttacg aatccgacta gtccttggat caatggtaac ataagccgac tattcaaaaa      3060
     tcgatcagac gcatatgaat gctggaagcg ggataaaagt gattctcaaa aatggaaaaa      3120
     tttcacacgc cttcgcaatc ttaccaatcg tgaagttgaa cgcaccaaaa aagaattttt      3180
     cgcctcaaag cttagtgctg atcttcccgc gaaacagctt tggaaaaata tcaaacgact      3240
     ggggttgaaa caaacaaaca ctactattgg aggtggtgat gtatgtgccg attcattgaa      3300
     cacatttttc gtatcccata atgttcctat ctcgttcaat ccgaataaca attcttctga      3360
     actcgaacca aacttttcct tccgatgcgt aaacaatgat gaagtcctta aggagttcat      3420
     ttccgcttca tgtgatgcta ttggtgttga taacattccg ttaaaaattc tgaagatgtc      3480
     cctctgcgtt acattacctt acattacaga tattttcaac ttttgcatta tcacttgtga      3540
     gtttcctatt gactggaaag tggctaaagt cataccaatt ggtaagattg aaaatcctgt      3600
     atcagtaaat gactaccgtc ccataagcat tcttcctgct ctctctaaag tttttgaatc      3660
     gattcttacg aaccagctca acgagtactt aagccaggaa aatctgttat gtcctttgca      3720
     atcaggttat aggaaaacat gcagtactgt gactgccttg ataaaaattg aaaatgacat      3780
     taaagaagct ctagacaaaa aaatgattac cataatggcc cttctggatt ttagtaaggc      3840
     atttgacacc atagatcatc gactattatg caaaaagctg aaaaatattt tcctgataga      3900
     taatctttcc attaatctgt taaggtccta cttacagaat cgtgtccagt atgttgaatt      3960
     taacttccaa caatctgaaa cgattaatgt agaaagtgga gtccctcaag ggtcaattct      4020
     tggtccgata cttttttcaa tgtatataaa cgatttgcct tctgtactat cctactgtaa      4080
     atttcatttg tatgcagacg attgtcaatt atacatttca ggaaatcata aaaatatttc      4140
     tgacattgta aacctcatta acatggatat acgtcgcatc ttgatatggt gtgagcaaaa      4200
     cggattacaa ctaaatgcaa aaaagacgca aactataatt ttccgcacca agcgaacagt      4260
     tctaacagat attccactga ttagagttaa tgataatttg attaactata cagatgtggt      4320
     aaaaaacctg ggtcttctta tggattgtaa tttaaactgg aacgcacaag ttaattcctt      4380
     gtgcaaaaaa gtttataatg ctttgcactc tctagttatt ttgagacatt gcactccatt      4440
     gcatataaga gttcatcttg cgagatcact tttagtgccc ttgttcgact atggtgatgt      4500
     tctatttggt cttgtatcta agaaaaattt aaataaacta aatctagttt ttaatgcggt      4560
     caccagatat gcatacaacc tgaaaaaata cgatcatata tcaaacttta ggaaggcaat      4620
     acttggatgt gaattcacaa ctcatctaaa gttcagaatg tgcattcaaa cttacaaaat      4680
     attgaataat cctccacctt atttacaaaa cttatttact tatgctcgat catcacgtgt      4740
     atctttactg tcagtccctc attgttccac caattatttg aaagaatctt ttcgtcatcg      4800
     cgctgtaaaa atttggaatg aattgccaag agattgtaga actgaattag gattcttttc      4860
     atttagacga aaaactaaaa tttacttgaa ttctgtttaa tattacattg gtattagagg      4920
     ttacttatat taaaatacag gcatatactt tgaaaatcaa tagatgatta tttgtgctac      4980
     tgtagtttga ataaataaat aaataaataa ataaa                                 5015
//
ID   L2-8_Hmel   repbase;    DNA;    INV; 1807 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1807
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-1807
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..317,206..1804)
FT                 /product="L2-8_Hmel_1p"
FT                 /translation="XPPKAKSRILLQRNFGGMDSERLXEDASKIDWTVTDN
FT                 ARTVDEQITIFNSFLITLYDTHAPVRPVRIKHLPAPWLTADIKKLQEKNIX
FT                 LRVNIFLTEVRQIEINMTSSCTMAYCGHKETAGKKHXAKSKYISDGSEANR
FT                 NKYVRARNRCNRVCRDSQRRHIYKSVIEEDDPAKVWKFLKSLGVGKTKHTV
FT                 NPTNLDLNSLNQHFTSSSTIDSTNKLKTLIDLSSLPAPQTPPFKFSQFTVC
FT                 DVKRNIIAIKSGAVGADCISRKMIIPIIDLLAPVITSILNRSILHGDFPSI
FT                 WKDAQILPLPKKSNPSSFSDYRPISILPLLSKVLERLVHKQLSTFLSKHNF
FT                 LNSLQSGFRHGHSTTTALVKITDDIRHGMDDRKITVLTLLDFSNAFGTVDF
FT                 DILLASLTSLNISPEVIDWFRSYLCGRRQRIRIDDSYSEWSFTSAGVPQGG
FT                 VLSPLLFSIFINTICLKISSLYHLYADDLQIYSQGTLTELPNTIQNINSDL
FT                 EQISVWSKHFGLTINPLKSQAIVIGSPRILSKIDLAHMPTIMIDGTSIPFR
FT                 ESVRNLGVVIDKHLSWEPQIGEISKKIYAASASLRRLRNFLPIPTKIALAN
FT                 SLLLPILDYADICYLDIKEEQLNKLERLQNLCIRFIFGIR"
XX
SQ   Sequence 1807 BP; 547 A; 384 C; 305 G; 564 T; 7 other;
     ttakaccccc taaagcaaaa tcgagaattc ttctgcagcg caactttgga ggtatggatt        60
     cggagcgktt aamkgaagac gccagtaaaa ttgactggac wgtcactgat aatgctcgaa       120
     cagtagatga acaaattact atwtttaatt cttttttaat aactctttat gatactcatg       180
     caccagtccg accggttaga attaaacatc ttcctgcacc atggcttact gcggacataa       240
     agaaactgca ggaaaaaaac atamcgctaa gagtaaatat atttctgacg gaagtgaggc       300
     aaatagaaat aaatatgtga gagctcgtaa tcgctgcaac agggtttgta gagatagtca       360
     acgacgccat atctataaat cagtaatcga agaagatgat ccagctaaag tctggaaatt       420
     tcttaaatcc cttggagtcg gtaaaacaaa acatacagtt aatccaacaa atttagattt       480
     aaattctctt aatcaacatt tcacttcttc tagtacaatc gatagtacga ataaattgaa       540
     aacattaatt gatctttcct ctttacccgc tccacagact cctcctttta aatttagtca       600
     attcactgta tgtgatgtta agagaaatat tatcgctatt aagtcgggtg cagtcggcgc       660
     tgactgcatt agtcgtaaaa tgatcattcc tataatagat ctattagctc ctgtaattac       720
     atccatttta aatcgttcca ttctccacgg tgatttccct tccatttgga aagatgccca       780
     aattctccca ttaccaaaaa aatctaatcc gtcttccttt tccgattatc gtccgatttc       840
     tatccttcca ttgttatcta aagtgctaga acgccttgta cataaacaac taagcacatt       900
     cctttcaaaa cacaatttcc taaactcctt acagtccggc tttcgccatg gtcatagtac       960
     gactactgct ctagtcaaga tcaccgatga catcagacat ggcatggatg atcggaagat      1020
     aacggtgctg acattattag attttagtaa tgccttcggc actgttgatt ttgacatttt      1080
     acttgcatca ctgacttctc ttaacatatc tcctgaggtg attgattggt ttcgttctta      1140
     cttgtgcgga cgccgacagc gcattcgaat agatgattca tattctgaat ggtctttcac      1200
     tagtgctggc gtcccacaag gtggcgtgtt gtcccctctc cttttttcaa tttttattaa      1260
     taccatctgt cttaaaattt cttctctcta ccacctgtat gcagacgact tacaaatcta      1320
     ctcacaaggt actctcactg agctacccaa taccatccag aacattaata gcgatcttga      1380
     gcaaatttca gtttggagca aacattttgg acttactata aatcctttaa agagtcaagc      1440
     aattgttatc ggtagtccta gaatactgtc gaaaattgac ttagcacata tgcccactat      1500
     aatgatcgat gggacttcca ttccatttag ggaatctgtt aggaacttgg gtgtagttat      1560
     tgataagcat ttgtcttggg aaccccaaat aggagagata agtaaaaaga tttatgctgc      1620
     ttctgcatct ctgcgtaggc tgcgcaattt cctaccaata cctaccaaaa ttgcgctggc      1680
     aaactcactc ctattaccaa ttctcgatta tgctgatatt tgttatctcg acattaaaga      1740
     ggagcaactg aataaacttg agcgacttca aaacctttgc attaggttca tatttggtat      1800
     acgtaaa                                                                1807
//
ID   L2-8_NVi    repbase;    DNA;    INV; 5587 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-8_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5587
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 758-758 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(837..1151,1121..2587,2591..5530)
FT                 /product="L2-8_NVi_1p"
FT                 /translation="MPRASCEKCRNVTRAGAIIRHCKICSATFHNVCMTWH
FT                 VTDKGNYICQACKIKKKDNTIKTQRKSAPRLELEKDKDKGDYNIKNKKTDV
FT                 NITDVNNTLAKMLIILMYTGENVNNSNVNKTDISITNDTNNNVSLREEFSA
FT                 STPAVSTSKASDGKRAQINSPVDMGALRYCTLPSSMLTLFSNQFELIERSV
FT                 DDLKTLLVRRLDAISQRSDPAPAALEMIDRLVERVSSLEEKIEKQVSKLED
FT                 LQNDRLLLSQENKALRESLDDAMRVMHRVETRINADDGGSCTSRNLSRNLS
FT                 LSLSNSSNKISNDNDGDSSSADICIAEASRVFVSLRDCESVDASGGAGAST
FT                 SADTDGFRVSKGRRHTRARKRRGEGREHSAGVRSSPTDGMSSGESTAEIII
FT                 SSISDCSEQERGDVAHAVLATVLPSVARDDIVSARLLRPNTRVATVGGRPS
FT                 PWVVRLSSHLIVKNIMRAKHKITGLNTRHINVSHLSQETSNSLVQSKIFIN
FT                 ELLSKESFLQFKSLKSVASGLGFKYVWHRGGRFLAKMRDGEMSHHFQTAXD
FT                 LQAIAASYSCTTSNDNLVNNVTAVHNGNAITGTAPCTGSLDKDSKKNLGGV
FT                 KVRGAECDGLRAGFINATSLNRHMEMFRQFLATARPFYHLFGVAESRFGPS
FT                 VDDVFAQVKGYSVLRQDRNTQGGGVALYIHNSYKATILCSSPTTTDGRKPG
FT                 IPEYLMCXIQKGRMPPIFVAVIYRPPGISFTTNSDLVDKLKLYAEDYNHRI
FT                 IMGDLNANMLSTSXDANFVKDLACELNLKLVEHGATHHVGESHTWIDVIYT
FT                 DDNEVVLNANNMMATFPSRHNIIDFTIRTPKSESPTLTPFFYRDFKSIRCE
FT                 ELLSLLEACDWSTISCPGMTTDSKLEALSGNIMTVIEKLAPLKKFKPKNKK
FT                 SSPWVNAELQDLYDKRDAVERRFKRTRDSRFWSEFQSLAAQAEQRTIEARE
FT                 AFIQARISEALNNNKNIWIELRNLGLLSTTKEELHGFSPGELNAHFAGVSV
FT                 SESESEVNLDEIVATASEAGFTFREITFSDVVLAVAHFSSQAKGEDGIPQD
FT                 VIAKSLPVLGHHLASIFNSSLSSGVFPGAWKKACLVPLKKTAIPSAASDFR
FT                 PIALLCFLAKVLEKIVHDQISEYLESEKLLDTRQTGFRRYHSTQTALLSLS
FT                 EDIRAGINSKKQLLTILLMFDFSKAFDTISPSKLLRKLIGMGFSRSVVLWI
FT                 KSYITGRNHQVVTKTVGNSDWLTTNLGVPQGSVLGPLLFSLYINDLRDILA
FT                 SFKGPKGELSDSVEHLLYADDLQTYTQVARDDLSGGVDRLSAVARAVAVWA
FT                 SENALRLNVGKTKAIIFGSDSNINKVQSLKLPGIEIEDGVFVPFADTVTNL
FT                 GVVMDSKMTWKPQVDAISRKVNRVLYGLRSFRSCTTEELRKQLAGALATPH
FT                 LDYCSLVYLDVSGQQSTRLQRLQNSCVRYICGARRDEHISPYRRKIGWVPV
FT                 KARRELFAAVMLYKAXVMGQPPYLAALFDRNQSRTSARDPQELVVPSARTD
FT                 AGLYSFKAQGARLWNSLPRDVRDLPSLKSFKAVMRRRIYVREIECTVDQNT
FT                 DSATVS*"
XX
SQ   Sequence 5587 BP; 1472 A; 1249 C; 1341 G; 1515 T; 10 other;
     cgtgtcgtct gctattggta agtcaagaag cagtagtgag ttgctctgct atctttgtac        60
     ttttcctaat attttcttca ctcctcggag tgttttctta cagcggaaag gaccccccaa       120
     acggctctta tgctcgcgct aaaaaaatca caatctctgt gctttttatg agcctggagg       180
     gaattttccg ctaactgtcg acgacataac ctacaatttc tgccgcctct gtcaccgagt       240
     ctgggacaac tgcagcgatc tactctcgtc gctctgaggg gatttctggc cagcggcgtt       300
     ctcagcgcag caacatcttg cttctatgcg cgtcttgcgt attttcgctg catcttctga       360
     ggtcagatct gcacacacac acacacacac acacatatat atatatatat atatatatat       420
     atatatatat atatatatat atatatatac atatatatct cgctcaataa gtgcgaaatc       480
     atcgccgcga tcgaggatcg atattctgcc gcaagagtgc aacactatcg caactcatat       540
     tactcgagca acagttggca gcactgactc ggcccacgcg catgtgcaat ctggtagctc       600
     tcaacgcgcc agatttgaat ttgaattttt gtagagcggg aaattcaaat gttcgttcgt       660
     aaccagtacc tagttgtctc tagtcaccat tcatttatgt aattatttgt ttatttattt       720
     attgcttgac gaaactctgt tgcctatttt gttttactct ctgacactta tttatttatt       780
     tatttattga cctatttatc tatttattta tttattattg taaatattta ttaaaaatgc       840
     ctcgcgcctc gtgtgaaaag tgtaggaatg tcacacgcgc aggcgctata attcgtcact       900
     gcaaaatctg ttctgcaaca tttcacaatg tttgcatgac ttggcatgtc acagacaaag       960
     gcaactatat atgtcaagct tgtaaaatta aaaagaaaga caacacgata aaaacgcaac      1020
     gaaaatctgc gcctagacta gaattagaaa aggataaaga taaaggagat tataacatta      1080
     aaaataaaaa gactgatgta aatattactg atgtaaataa tacactggcg aaaatgttaa      1140
     taattctaat gtgaacaaga ctgacatctc gattacgaat gacacaaaca acaatgtttc      1200
     cctgagggaa gaattttctg cctcgacgcc ggccgtctct actagtaaag ccagtgatgg      1260
     gaagcgcgcc cagatcaact ctccggtgga tatgggtgcg cttcgctatt gcacactgcc      1320
     atcatccatg cttactctct ttagtaacca gtttgagctc attgagagat cagttgatga      1380
     tctcaagact ctgcttgtga ggaggcttga tgccatcagc cagagatcag atcctgcccc      1440
     agcagcactg gagatgattg acaggctggt ggagagggtt tcatcactcg aggagaaaat      1500
     tgaaaagcag gtgtctaagc tggaagacct gcaaaatgat cgccttctgc tctctcaaga      1560
     aaataaagcc cttcgggaga gtcttgatga cgctatgcga gtgatgcata gagtagagac      1620
     tcgcataaat gctgatgatg gcggttcttg tactagtcgt aaccttagtc gtaatcttag      1680
     tcttagtctt agtaatagta gtaacaaaat tagtaatgat aatgatggag acagtagcag      1740
     cgcggatata tgtatcgcgg aggcgtctcg agtcttcgtc tcgctcaggg attgtgaatc      1800
     tgttgacgcg agtggtggcg cgggcgcctc cacgtcggct gatacagatg gctttagggt      1860
     cagtaaaggt cgacgtcaca cccgggctcg taagcgtcga ggggagggtc gggaacactc      1920
     tgctggcgtg cgttcctctc cgacggacgg gatgagcagt ggagagtcta ctgcagagat      1980
     aatcatctct agtatttctg attgttcgga acaagaacgt ggggacgtgg cccacgcagt      2040
     cctcgctact gttctgccgt ccgtcgctag ggatgacatt gtgtctgcga ggttactccg      2100
     tccaaatacg cgagtggcaa cggtcggcgg gcgcccatcg ccatgggttg tccgtctatc      2160
     gagccacttg atcgtaaaaa atattatgcg agcaaaacac aagataaccg gcttaaacac      2220
     gcgccatatc aacgtctcgc atttatccca ggaaacgagt aatagcctgg ttcaaagtaa      2280
     aatcttcata aatgagttgt taagtaaaga atcgtttttg cagtttaaaa gtcttaaaag      2340
     tgtagctagc ggtcttggtt tcaagtacgt ctggcataga ggcggtcgtt tcttggcaaa      2400
     aatgcgggac ggggagatgt cacatcattt tcaaacggca rctgacttgc aagccatcgc      2460
     tgcatcatat tcttgtacga cgagtaatga caatcttgta aataatgtga cagcggtaca      2520
     taacggtaat gcgatcactg ggactgcgcc gtgcacagga tcgctagaca aagacagtaa      2580
     gaaaaactga ctaggcggag tgaaggtgag aggagcagag tgtgatgggt tgagggcggg      2640
     atttatcaac gctacctcgc tgaacaggca catggagatg tttcgtcaat tcctggcgac      2700
     tgctcgtccc ttctaccatc tctttggcgt ggctgagtcg cgtttcgggc cgagcgtcga      2760
     cgatgtattt gctcaggtaa agggctactc tgtccttcgg caggacagga atacccaggg      2820
     aggaggtgtg gcactataca tccacaatag ttacaaggcg accatactgt gctcatctcc      2880
     aacaacgacg gatggtagaa agcccgggat tccagagtac cttatgtgta raattcaaaa      2940
     gggccgcatg ccccccattt ttgtcgccgt tatmtacaga ccaccgggta tttctttcac      3000
     gaccaactct gacctggtkg ataaattaaa actatatgcg gaagactata atcatcgtat      3060
     aatcatgggg gatctaaacg caaatatgtt gtcgacgtct cakgatgcga attttgtcaa      3120
     ggatttggcc tgtgagttga atctcaaatt agttgaacat ggcgcgacgc accacgtcgg      3180
     ggagtctcat acgtggattg acgtaatcta tactgacgac aatgaagtag tgctgaatgc      3240
     gaacaacatg atggcgacct ttccgagtag gcataacatc attgatttta cgattcggac      3300
     tccaaagtcg gaatctccta ctctaactcc attcttttat agagatttta aatccatcag      3360
     gtgcgaggag cttctttccc ttctcgaagc ctgcgattgg tcgaccatca gttgcccggg      3420
     catgaccaca gacagtaaat tagaagcgct tagtggtaac atcatgactg tcattgaaaa      3480
     acttgcccct ttaaagaaat ttaaacccaa aaataaaaaa tcttcaccgt gggtcaacgc      3540
     wgaacttcaa gacctttatg ataagcgtga tgcggtcgaa cgaagattca aaaggacccg      3600
     tgactcgagg ttctggtcgg aattccagtc tcttgcggct caagcagaac agcgcacaat      3660
     cgaggcgcga gaggctttta ttcaggccag aatttcggag gccytgaaca acaacaaaaa      3720
     catctggatt gagcttcgta atcttggact attgtccacg actaaggagg aactgcacgg      3780
     tttctcccca ggcgagctca atgcccactt tgccggggtc tccgtatcag aatcagagag      3840
     cgaggtgaac ttggatgaga ttgtggcgac ggccagtgaa gctggtttca ctttccgtga      3900
     aatcactttt tcggacgtgg tcctggccgt tgcgcatttc tcatcacagg caaaagggga      3960
     ggatggcatt cctcaggatg tcattgctaa atcccttccg gtcctgggcc accaccttgc      4020
     atctattttt aactcctctc tgtctagtgg cgtcttccct ggagcctgga aaaaggcctg      4080
     tctagtgccc ctcaagaaaa cggcwattcc atcagccgct tcagactttc gtccgatcgc      4140
     tctgttatgt tttcttgcca aggttctaga gaagattgtt cacgaccaga tatccgagta      4200
     cttagagtcg gagaagcttc ttgatacacg tcagacgggt tttcggcgtt atcacagcac      4260
     gcaaacagca ctactgagtc tgtcagagga cattagggcg ggtattaata gcaaaaaaca      4320
     actgcttact atcctcctga tgtttgattt cagtaaggcg ttcgacacga tctcaccctc      4380
     taaacttctt cgaaagctaa taggaatggg tttctctagg tctgtagttc tgtggatcaa      4440
     gtcatatatt acagggcgta accatcaagt ggttacgaaa acagttggca attctgattg      4500
     gctcactacc aatcttggcg ttccacaggg ctcggtcctg ggtcctcttc tctttagtct      4560
     ttacatcaac gatctcagag acattttggc ttcttttaar ggccctaagg gcgaattatc      4620
     ggatagtgtc gagcatttgc tatatgctga tgaccttcaa acctatacgc aggtggcgag      4680
     ggacgacttg agcgggggtg tggaccgtct gtcggctgtg gcgcgtgcag tggcggtatg      4740
     ggcgtccgag aacgcgcttc gcctcaatgt cgggaagact aaagctatta tttttgggtc      4800
     ggacagtaat attaacaagg tgcaaagtct aaagctgcct ggcattgaga tcgaggatgg      4860
     cgtcttcgta ccctttgccg acactgtaac caaccttggt gttgtaatgg attcgaagat      4920
     gacatggaaa ccgcaggtgg atgcgattag ccgaaaggtt aatagagtcc tttatggact      4980
     tagatccttt agatcctgca ccaccgagga actgcgtaag cagctggcgg gcgctcttgc      5040
     caccccgcac ttggattact gctctcttgt ctaccttgac gtatcaggtc aacaaagcac      5100
     acgacttcaa cgattgcaga actcatgtgt gagatacata tgtggtgcta gaagggacga      5160
     gcacatctcc ccctatagga ggaagatagg ctgggttcca gtgaaggcaa gaagggagtt      5220
     atttgcggcg gtgatgcttt ataaagcart tgtaatggga cagccgccgt atcttgctgc      5280
     cctttttgat aggaaccagt ctagaacctc agctagggat ccgcaagaac tagtggtgcc      5340
     tagcgcgcgt accgacgcgg ggctatattc ctttaaagcc cagggtgcgc gcctctggaa      5400
     ttctctcccg cgcgacgtga gagatctccc gtcgcttaaa tcttttaagg ctgtgatgcg      5460
     gaggcgcata tacgtacgcg agattgagtg tactgtcgat cagaacactg attctgcgac      5520
     tgtttcgtga ctccgttaga tattgtaccg tccaaatatt tattctattt atttatttat      5580
     attatta                                                                5587
//
ID   L2-9_AAe    repbase;    DNA;    INV; 4865 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2 non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4865
RA   Kojima K.K. and Jurka J.;
RT   "L2 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1405-1405 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           650..1831
FT                 /product="L2-9_AAe_1p"
FT                 /translation="MDACKACGSNLGRSERSVLCSGLCGSVFHPGCVGLNA
FT                 TNFKAWTANVGLLWFCEHCRINFNPSIIDREAVIIKTMRDLLTRVDSMDLR
FT                 IGQFGENLKSMYGLLSLTTSMRRDSTVSTRPQRFPLSSMATHDPSDFYNSI
FT                 ARLNLDSTLQSNAANNSIQFPDEIEVELDDSQSNEHMSRGDLPRTYAAAVA
FT                 APIVSNASEHTSASIIVPAARTTTIANSATSVTSVANASVATASVTTASVT
FT                 DTAAATPVPRVAFSIPIDDNLSSTRASAIVPASHDENCRLKVVNRNRLIAN
FT                 RETPDEPLKSFYVTPFTVEQTEEDIIEYLRETVSIDDSTVKCVKLVPRNKN
FT                 ISELSFVSFKVSVSENLASVIGDRFYWPEGVEIREFQPKNGVRLNQPIQIQ
FT                 "
FT   CDS           1831..4749
FT                 /product="L2-9_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNVSDTNANVLLNCNSPPLTVLSHPALSHELTYNKEI
FT                 KMHYFDYSQTKALIQKFTRNFLKIGFHNARSLLKNIDNYRMLFENSKMNIF
FT                 AIVESWLKPSVTNKSVELKGYKIVRSDRCNKDKKRGGGVAFYIKSDMKYSV
FT                 ICKSERDNDVDYLFIKLIQSKLVCGVVYKPPDIHVSKLDVFFNKITEICST
FT                 EANILVMGDFNINMLATDSLKTRSLVDHVNALSFELIDSWPSCHKPGCQPS
FT                 LLDLLMGNCTTNISNAYQSSIGGISDHDLICVDYRFKNSKVKPEEYWGRDY
FT                 HKINAESFVSDLQNCSFNRLYYCSNANEKLKCFNELLLSTLDRHAPLKKKT
FT                 FKDPSCPWINKHINQIFSNRSEAYECWKKDKNNLRKWNNFKCLRNFANREI
FT                 IRVKREYFTTQLNADLPTKQLWNNIKRLGLKQTNTKMGGGDVNASTLNNYF
FT                 VSHYVPITFIENCDSTELQSEFTFRGVTNDEVLEEFTSASCDSVGVDLIPL
FT                 KILKMSLPVTLPYITNLINYCITCSQFPEDWKVAKVIPIGKVDNPTTTKDF
FT                 RPISILCALSKIFESILAKQLNDYLRSKNLLSPFQSGYRKSCSTVTALIKV
FT                 ENDIREALDKKMVTVMALLDFSKAFDTISHSLLCDKLLRIFKLDYFSVKLI
FT                 RSYLTRRSQYVEFNNKESEKITVPCGVPQGSILGPLLFSMYINDLPLTLSF
FT                 CKFHLYADDCQLYLSDTVNNLPNTVRKMNSEIQNILKWCKLNGLLLNSKKT
FT                 QTIIFRNKRMAINNAPKIKVDNDTIEYSDTVKNLGLLMDCKMCWNDQVNAV
FT                 CNKVYKALHSLVVVRSCTPQHTRLLLARSLIIPLFDYGDVLFSLVSKKNLQ
FT                 KLNSAFNTVIRYVFNLGKFDHISSYANSLLGISFTNYLKTRMCTQTFKILN
FT                 NPPTYLRNFFAYARSLRAPLLTVPRCFSGYLKDSFRHRAIRAWNELPRKCR
FT                 CERSYLSFKNSVDKFYNK"
XX
SQ   Sequence 4865 BP; 1509 A; 957 C; 898 G; 1501 T; 0 other;
     aacaccagtt aattagtcgg aacgcgtttt tttctcaact cctaatattt gaagatttac        60
     acctgtgtct gaagcgattg tggcaaaccc attcggaatt cgaccaagta ttactcgctt       120
     atcgggacgt gactgaagat caaacaattt ctactaaaac cttcgtgcaa aagtgtttta       180
     aaattgtgtt ccatttcgaa gttgccattc tagaacaacg aaaagtaccg aaaattgagt       240
     actagttgta ttggtgttga ttggatatag ggtacactca caacattgtg cctgcagtca       300
     tagctgacaa gtaccattat cgctcagttt gttttgctct gtgcatttgc acgctttttc       360
     aagcggtgct gttgtgttgg atagaggagt gtttctgggt gcgtctggtg gtttcaaaaa       420
     ccagaacact ttaatcgaga cgcatgatct ggttcaacac cggctttagc gaacagtact       480
     aatacagcga aacaatagta gcaagatctg ggaacgttgc ttacttgttt ggtacaagca       540
     agtgtttgta ctcctatatc ttctcttcat caatacttct actactcttt cgtaaggaaa       600
     ttcaaatcta gtgtggattt tacttagggt gggacatata ttttgagaca tggatgcatg       660
     caaggcctgc ggtagtaatc ttgggcgatc ggaaaggagc gttctgtgca gtgggctgtg       720
     cggaagcgtt ttccatcctg ggtgcgtcgg tctaaatgcc acgaacttca aagcttggac       780
     agcaaacgtc ggcttgctct ggttttgcga gcactgcaga attaatttca atcccagcat       840
     tatcgaccgt gaagccgtca ttatcaagac aatgcgagac ctcctaacgc gcgtcgattc       900
     gatggatttg agaatagggc agttcggaga aaatttaaaa tcgatgtacg gtctgctttc       960
     tctgacaacc tcgatgcgaa gagattcgac tgtttcaaca cgcccacaac gttttccgct      1020
     atcgagtatg gcaacacatg atccttccga tttctacaac agtattgctc gcctgaatct      1080
     ggactcgact ctgcaatcca atgctgccaa caactccatc caatttcccg atgaaataga      1140
     agttgaattg gatgactctc aatcgaacga acatatgtca agaggtgatt tgcccagaac      1200
     gtatgcagct gcagtggcag cgcctattgt ttccaacgca tctgaacata caagtgcttc      1260
     gatcatcgtt cccgctgcca gaaccaccac catcgccaac tccgcaacct ccgtcacctc      1320
     cgtcgccaac gcctccgtcg ccaccgcctc cgtcaccacc gcctccgtca ccgacaccgc      1380
     tgctgccacc cctgtcccgc gtgttgcttt tagtattccc atcgatgata atctttctag      1440
     tactcgtgca tcggctattg ttcctgcttc acatgatgaa aactgtcgtt taaaagtagt      1500
     caacagaaat cgcttaatag ctaatcgcga aacaccagat gaacccttga aatcatttta      1560
     tgttacacct ttcaccgttg agcaaacaga agaggacata attgagtacc tccgggaaac      1620
     cgtttctatt gacgattcga cagtgaagtg tgtgaagctt gttcctcgta ataagaatat      1680
     cagcgagttg tcttttgttt catttaaagt tagtgtgtcg gagaatcttg catccgttat      1740
     cggtgatcgt ttttattggc ctgaaggcgt tgaaattcga gaatttcagc caaaaaacgg      1800
     agttcgactc aatcaaccta tacagattca atgaacgtaa gtgacactaa tgccaatgta      1860
     cttttgaatt gcaattctcc tccattaact gttctctcac accctgctct ttctcacgaa      1920
     ctgacttata ataaggaaat caaaatgcac tatttcgatt attctcaaac aaaagcatta      1980
     attcaaaagt tcacgcgcaa ttttttgaaa atcggatttc acaatgctcg aagtctttta      2040
     aaaaacattg ataactaccg tatgcttttc gaaaattcca aaatgaacat ttttgccatt      2100
     gttgaatcat ggcttaaacc ttctgtaaca aataaatcgg tagaattgaa aggatacaaa      2160
     atagttagat cggatcgttg caacaaagat aaaaaaagag gtggaggagt tgcattttat      2220
     attaaatcag atatgaaata ttctgttatt tgtaaatctg agagagacaa tgatgttgat      2280
     tatctgttca taaagttgat tcaatcaaaa ttagtttgtg gcgttgtgta caagcctcca      2340
     gatatacatg tttcaaaatt agatgttttt ttcaacaaga ttaccgaaat ctgttcaact      2400
     gaggctaata ttttagtaat gggagatttt aacattaata tgcttgctac tgattcattg      2460
     aaaactcgca gtctagttga ccacgtgaat gcattgtctt tcgaacttat tgacagttgg      2520
     ccatcctgtc ataaacctgg atgtcaaccg tctctgcttg acctgttaat gggaaattgc      2580
     acaactaata ttagcaatgc ttaccaatca tcaatcggag gaattagtga tcatgatctg      2640
     atttgcgtgg attatagatt taaaaactca aaagtcaaac ctgaagagta ctggggtcga      2700
     gactaccata aaataaacgc tgaatctttc gtatctgatc tccaaaattg cagttttaac      2760
     aggttgtact attgctctaa tgcaaatgaa aaacttaaat gctttaatga attgcttctg      2820
     tccacccttg atcgtcacgc tcctttgaag aaaaagactt tcaaagatcc cagctgtcca      2880
     tggatcaata aacatataaa tcaaattttt tcaaaccgtt ccgaagctta tgagtgctgg      2940
     aaaaaagata agaacaatct tcgaaagtgg aataatttca aatgtttacg aaactttgct      3000
     aatcgtgaaa taattcgtgt caaacgtgaa tatttcacca cacagcttaa tgcagatctg      3060
     ccgacaaaac agttgtggaa taatataaaa cgtttaggac taaaacaaac aaatacaaaa      3120
     atgggtggtg gtgatgtaaa tgcttcaacg ctcaataact actttgtttc acactatgta      3180
     ccaatcacgt ttattgaaaa ttgtgatagt actgaactgc aatcagagtt tacgtttcgt      3240
     ggagtaacta acgatgaagt tcttgaggaa tttacctcag cgtcctgtga ttcggtcggt      3300
     gttgatctta ttccacttaa aatcctaaaa atgtctttgc cagtaacctt gccgtacata      3360
     actaacttga taaattactg tataacctgc tctcagtttc ctgaagattg gaaagttgct      3420
     aaagttattc ccataggcaa agttgataat ccaactacca ctaaggattt tcgtccaatc      3480
     agcattcttt gcgctctgtc caagatattt gagtcaatac ttgctaaaca attgaacgac      3540
     tatttgagaa gtaaaaattt attgtctcca tttcaatcag gatatcgtaa atcttgcagc      3600
     actgtaactg cgttgataaa ggttgaaaac gatataaggg aagctctcga caaaaaaatg      3660
     gttacagtca tggcactact agatttcagt aaagcgtttg acacaattag tcatagttta      3720
     ctttgtgata aacttttacg aattttcaaa cttgattatt tttcggtaaa attgatacgt      3780
     tcgtacttga cacgccgctc acaatacgtt gaatttaaca acaaagaatc ggagaagatc      3840
     acagttccct gtggtgtacc ccagggatcc attttaggtc cacttctttt ttccatgtat      3900
     atcaatgatc tgccactcac tctatctttc tgcaaatttc atttatatgc tgatgattgt      3960
     cagctatatt tgtccgatac tgtaaataat ttacctaata ctgtaagaaa aatgaactct      4020
     gaaattcaaa atattttgaa gtggtgtaaa ttgaacgggc tattattgaa ctcgaaaaaa      4080
     acacagacaa ttatcttcag aaataagcgt atggcaataa ataacgctcc caaaatcaaa      4140
     gtggacaatg atacgattga atattccgat actgttaaaa accttggctt actaatggac      4200
     tgtaaaatgt gttggaatga ccaagtaaat gcagtatgta acaaagtata caaagctctt      4260
     cattctctcg ttgttgtaag aagttgcact ccacaacata cacgtcttct acttgcaaga      4320
     tctctaataa ttccactgtt tgattatggg gatgttttat tttctctagt ttctaagaaa      4380
     aatttacaaa aactgaattc agcgtttaac acagtcataa gatatgtttt caatcttgga      4440
     aaatttgacc acatatctag ttacgccaat tccttactcg gtataagttt caccaattat      4500
     ctaaaaactc gaatgtgcac tcaaacattt aaaattctaa ataatcctcc tacgtatctt      4560
     aggaactttt ttgcatacgc ccggtccttg agagcacctt tattaacagt gcctagatgt      4620
     ttttctggat atcttaaaga ttcgtttcga caccgtgcaa ttagagcgtg gaatgaattg      4680
     ccaagaaagt gtaggtgtga gaggagttat ctatcattca aaaatagtgt tgataaattt      4740
     tataataagt aacaaagtac attggtataa gtcgtctagt aatagcatat actttgaaaa      4800
     ccgttaggag gttatttgtg ctgttatact gtagttggaa ataaataaat aaataaataa      4860
     ataaa                                                                  4865
//
ID   L2-9_Hmel   repbase;    DNA;    INV; 1854 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   L2 element from Heliconius melpomene.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1854
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1527
FT                 /product="L2-9_Hmel_1p"
FT                 /translation="SILSISSNAVGTDCISRKMITPILDTVTPILTHILNF
FT                 SISVGKFPETWKNAQIIPFPKKPNPQHLADFRPISILPFLSKVLEKLIHKQ
FT                 LITFVNNHSILSPFQSGFRSGHSTTTALIKVTDDIRRAMDNKQLTILVLLD
FT                 FSNAFSNVDYEVLLSLLSSINISPSVVDWFRSYLNGRKQRIRIEENFSSWR
FT                 VVQAGVPQGGVLSPLLFSIFINSITNHLSCPYHMYADDVQIYAHSTPENLV
FT                 NSIQTINNNLLAISNWSNYFGLKVNPIKSQVIIIGSPGMVSRVKYTYLPPV
FT                 VYNDTLLPYCTSVKDLGVHLDQNMSWSVHVNNISRKIFHAIGSLRRLRSVL
FT                 PIPTKIMLANSLLLPILDYADASYPNLTEDYLNKLERLQNLAIRFIFNLRK
FT                 YDHVSEFRXKLKWLPIRSRRNLHTLSLLYCVLHNEKSPPYLKEMFEFLGAH
FT                 SNRLRSSENLALKTPIHSTRFYEHSFAVKATKLWNDLPLSIKRSKSLNIFK
FT                 KLVKYYYLKDDSP"
XX
SQ   Sequence 1854 BP; 555 A; 370 C; 284 G; 643 T; 2 other;
     agcatattgt ctatctcttc gaacgctgtc ggtactgact gcattagtcg caaaatgatc        60
     acgcctatcc ttgatactgt aactcctatc ctgacccaca ttctcaaytt ttctatttct       120
     gttggcaaat ttcctgaaac atggaagaat gcacaaatta tcccttttcc aaaaaagccc       180
     aatcctcaac atctagctga tttccgccct atttctattt taccgttcct ttcaaaagtc       240
     cttgaaaagc ttatacataa acaacttatt accttcgtta acaatcactc cattcttagt       300
     cctttccaat caggctttcg ttctggtcat agtactacaa ctgcgctaat aaaagtcaca       360
     gatgacattc gaagagctat ggataataaa caactcacaa ttcttgtact ccttgacttt       420
     agcaacgctt ttagcaacgt agattatgaa gtattgttga gtttgttaag ttctattaac       480
     atatctccgt ctgtggtgga ctggtttcga agttacctta atggccgtaa acagcgcata       540
     cgaattgagg aaaatttctc ttcgtggcgt gttgtccagg ctggggtacc tcaaggcggt       600
     gttttatctc ctttgctctt ctcaattttt ataaattcta tcactaacca cctttcgtgt       660
     ccctatcaca tgtatgcaga cgatgttcaa atttacgccc actcaactcc agaaaacttg       720
     gtaaattcca ttcaaactat taataataat ctccttgcta tatcaaactg gagtaactat       780
     tttggtctga aggttaaccc tataaaatct caggttataa taattgggag cccaggtatg       840
     gtttcgaggg ttaaatacac atatttaccg cctgttgtat acaatgatac gcttttacca       900
     tattgcacgt cagttaagga tcttggggta catttagacc agaacatgtc atggtccgta       960
     catgtaaata atataagtcg gaaaatattt catgcgatag gctctctccg acgtctacga      1020
     tctgtgttac ctattccaac caaaattatg ttagcaaatt ctctattact accaattctc      1080
     gattatgccg atgcaagcta tcccaactta accgaggact atctgaataa acttgagcga      1140
     cttcaaaatc tcgctattcg gttcatattt aatttgcgta aatatgacca tgtatctgaa      1200
     tttcgtdcta agctcaagtg gctcccaata cgcagtcgcc ggaatctaca tacactttct      1260
     cttctgtact gtgtgttaca caacgaaaaa tcgcctcctt atttaaagga gatgttcgaa      1320
     tttttaggtg cgcattcaaa tagattgaga tcctccgaga atcttgctct taaaactccg      1380
     atacattcca ctagatttta tgagcactcc tttgctgtga aagcaactaa gttgtggaat      1440
     gatctaccgc taagtattaa acgttctaaa tctttaaata tatttaaaaa attagttaaa      1500
     tattattatt tgaaggatga ttcaccttga aatgacatca atatgtacaa ctcattgtta      1560
     taaatagtat tattatatat attagtatat tataatggta tgtatttttt caaatatata      1620
     tgtattatgt ttatgtatta gaatttaata tgacatgtaa gtttatttac accacccact      1680
     ctattttatc acagatttcc taacccaaag gttgtctggt agaaatcgct gattagcgat      1740
     aaggccgcct tttgtgtgtc aattgttata tttttgtcgt ttttatactc ttctttttct      1800
     tcttaatgtg taattgtgca caataaagtg taaataaata aataaataaa taaa            1854
//
ID   L2-9_NVi    repbase;    DNA;    INV; 5547 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   CR1-like retrotransposon: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; L2-9_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5547
RA   Bao W. and Jurka J.;
RT   "CR1-like elements from the parasitic wasp Nasonia vitripennis.";
RL   Repbase Reports 9(4), 759-759 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1572
FT                 /product="L2-9_NVi_1p"
FT                 /translation="MNLSTPKVRLPRNSGTNSTKSNNLAVTTPAPKPAASE
FT                 GKSTPEEVEEAISTKQSTTPDAGHHCALPSSMLNLFSSQFELLERAVEDLR
FT                 SLISRKFDAVAGATVGAPASSGHQEDFTARIASLEGKIDAQSTKLDGLHND
FT                 RMLLLQENTVLKEQLNGLVRKIEGMADSVASKCRAHDVSHSDSDADDSRIM
FT                 ISLRDIDVSASCMRDAGSPVIDVANDFKQIRAAARSRVGGRRRRDAGAQFV
FT                 SRAVDGESGSVSGDCGSDSRGIESESGGAGSSQTTKHKRLSPLSSNTSELG
FT                 GMRGSENEADLIISNVSDGTDAQRLNVAHAVLAAIIPSISRDDVVSLRMLR
FT                 REVDDGHGSRQRRSPWVVRLSRRDIANSIMRAKSSFVAFSTKDINVSLLNE
FT                 ETRNSLISSKIFINELLSNDNFIKFNNLKRIARGLNFKYIWHRGGRFLIKR
FT                 GDGDRTHEFTSAADLHALAASYNNNNTC*"
FT   CDS           join(1787..3541,3442..4554)
FT                 /product="L2-9_NVi_2p"
FT                 /translation="MGMFRQCLANARPSYHLFGVAETRFGSEVDDVFAQVD
FT                 GYSVLRQDRNKRGGGVALFISNVFKATILCSSQSEVEGKPGIPEYLMCGVQ
FT                 QGNKPPIFVAVIYRPPGVSFSDNSELANNLRRYSAGYDYRLVMGDLNANML
FT                 STSHDAEFVRDLACELNLKLVNHGATHHVRDSHTWIDMIFTDDDNVVLSAS
FT                 NSPANFRSSHTIIDVEIYFQTTEPPALNSLTYRDFKSIKSDELLSLLAACD
FT                 WSSVSCSDSGVDTRLEHLSQKLLTVIDQLAPLKEFKPRQKDYPPWVDAELR
FT                 HLYSRRDALKRRHKHARRGSRRRDDLWTEYQALAAEAERCTNQAREEFIQN
FT                 RIFDALENNKNVWNELRSLGLISKAKEDLHGFTTDELNTHFAGVSISDAER
FT                 EVDLSGILAEANEDGFTFREVTFADVVLAVAHFSSQAKGEDGIPQSVIAKS
FT                 LPVLGHLLVTLFNASLSCGVFPGAWKNAHLVPLKKKPIPSTVSDFRPIALL
FT                 SFLSKVLEKIVHEQISEFLASKNILDPFQTGFRHNHSTQTALLKLTEDIRT
FT                 GIDSDKQLLTILLLVSLGRWSCGSCLIYLDVTKEWLLNQTATHHFATGFSR
FT                 SVVLWVMSYLSGRNQRVVTKLNGESSWLTTNLGVPQGSILGPLLFSIYIND
FT                 LQEVLAGFRGPKGLLTDSVAHLLYADDLQTYTQVTRDNLREGVDRMSAAAR
FT                 AVSDWASHNALHLNTGKTKAIIFGSEYNVNKLQGLNLPGVEVQTGVFVPFV
FT                 DAVTNLGVVMDSKLTWKPQVDAVSRKVNRALYGLRSFRSCTNEALRKQLAG
FT                 ALVISHLDYCSVVYLDVSGELETRLQRLQNSCVRYICGVGRYEHISPYRRK
FT                 LGWMNIKERRTYFMAVLMYKAHSMGQPPYLSALFEKNQCRTSGRSSRDITV
FT                 PGTRTDTGLKSYRVQGARLWNSLPRGMRTLPSLSRFKLAMRNYLLPTLSET
FT                 *"
XX
SQ   Sequence 5547 BP; 1421 A; 1258 C; 1436 G; 1432 T; 0 other;
     cctgccaaaa atgtgctgcc acaaaagaag gaaaaagaag aaactgagaa agagaaaggg        60
     aaagacaata aaggcaagca tatcacgccg ggcaccaaga gctcgacgaa gggctcgttg       120
     tcactgtcat catctcgcaa atctgataag atgaacctca gcacgccgaa ggttcgtctt       180
     cctcgcaact cgggcacgaa ttctacgaaa tccaataatc tcgcagtgac aacacctgct       240
     cctaaaccgg ctgcctctga aggcaaatcg acaccagaag aagtagaaga agcgatttcc       300
     accaaacaga gcactactcc ggatgccggg catcattgcg cactgccatc gagcatgctt       360
     aatttattca gctcgcaatt tgagctgctg gagagagcgg ttgaggatct tcgatccctc       420
     atatcaagaa aattcgatgc cgtggctgga gccacagtcg gtgcaccagc gagcagtgga       480
     catcaggaag attttacagc tcgtatagca tccctagagg ggaaaatcga cgcccagtct       540
     accaagctcg atggcctcca taacgacagg atgctacttc tacaggagaa caccgtcttg       600
     aaagagcaac tcaacggcct cgtgaggaag atcgaaggta tggcggacag tgtagcgtcg       660
     aaatgtcgtg cgcatgacgt gagtcactct gactctgacg cggatgattc gcgtattatg       720
     atctccctca gagacatcga tgtctcagcg agttgtatga gggacgcggg ttctccggtg       780
     attgacgtgg cgaacgattt taagcagatt cgtgctgctg cgaggtctcg ggtggggggt       840
     cgacgtcgtc gcgacgcagg tgcgcagttt gtctctcggg cagtcgatgg cgagtcggga       900
     tcggtttcgg gagattgcgg gtctgattct cgcgggatcg agtctgagtc tggaggagct       960
     ggctcctcgc agacgacaaa acataaaagg ttatcacctc taagctcaaa tacttccgaa      1020
     ttgggtggga tgcgtggtag tgagaacgag gcagatttaa taatttctaa cgttagcgat      1080
     gggacagacg cgcagcgtct aaatgtggct catgccgttc tcgctgcgat catcccatcc      1140
     atatctaggg atgacgtagt ttcgttgcgc atgctcaggc gcgaggttga tgacgggcat      1200
     ggatctcgtc agcgtcgctc cccatgggta gtgcgtctct ctcgccggga tattgcgaat      1260
     agcataatgc gtgcgaagag tagctttgta gcttttagta ctaaggacat caacgtatcc      1320
     ctgcttaatg aggaaacgcg taatagcttg ataagtagta agatttttat taatgagctt      1380
     ttgagtaatg acaattttat aaaatttaac aaccttaaac gaattgcacg agggttgaac      1440
     tttaaataca tttggcatcg aggcgggcga ttccttatca agcggggaga cggcgacagg      1500
     actcatgagt ttacgtcggc agcggattta catgcactag ctgcatctta taacaataac      1560
     aatacttgtt gatactaatg gtaacatcga caatgtcgtt agaaatgcca ctcccgctac      1620
     gagggcaact aataaaactg ctgaatccac tggaccgacg cagacggaag caaatgtggc      1680
     tccgactgcg caggatcagg attgactggg ccggggcaat gcgagagagg ccgggagcga      1740
     ggcactgaag gcgggattcc tcaatgcgac ctcattgtat gcgcacatgg ggatgttcag      1800
     gcagtgtctt gcgaatgctc gtccttccta ccacctcttc ggcgtggctg agacgcgctt      1860
     tgggagtgag gttgatgacg tgtttgcgca ggttgacggg tactcggttt tgcgacagga      1920
     caggaacaaa cgtggaggag gcgtagccct gtttattagt aatgttttca aagcgactat      1980
     actatgctcg tcgcagtcag aggtggaggg gaagccgggt atcccggagt atcttatgtg      2040
     cggcgttcag cagggtaata aaccaccaat cttcgttgcc gtaatctatc gtccaccggg      2100
     tgtatctttc tctgataatt cagagctcgc gaacaacttg cgtagatact ctgcggggta      2160
     tgattatagg ctcgtaatgg gcgacctgaa cgccaacatg ctgtcaacct cacatgatgc      2220
     ggaatttgtt agagacctcg cctgtgaatt gaatctaaaa ctggtaaatc acggcgcgac      2280
     tcaccacgtc agagattctc acacatggat cgacatgatc tttactgacg acgacaatgt      2340
     agtgctgagt gcaagcaact cgccagcgaa tttcagaagc agccatacca tcattgacgt      2400
     tgagatttat ttccagacga cagagccccc tgctctcaac agtcttacat acagggactt      2460
     taaatcgata aaatctgacg agctcttatc cctgctggct gcttgtgatt ggtcgtcggt      2520
     tagttgttcc gacagcggcg ttgacacccg actagaacac cttagtcaaa aactcttgac      2580
     agtcattgac caactagctc cgctaaaaga atttaaaccg agacagaaag actatcctcc      2640
     atgggtcgac gccgaattga gacacctgta cagccgacga gacgctttaa aaagacgaca      2700
     caaacatgcc cgacgaggct ctagacgacg tgacgaccta tggaccgaat atcaggctct      2760
     cgccgctgag gctgaacgct gtactaatca agcgcgagaa gaatttattc aaaatcgaat      2820
     tttcgacgcg ctggaaaaca ataaaaacgt ctggaatgaa ttacggagtc ttggccttat      2880
     ttcaaaggcc aaagaggatt tacatggctt caccacggat gaattaaaca cgcatttcgc      2940
     tggggtgtcc atatctgatg ccgagcgcga ggttgatctg agtggcatcc tggccgaggc      3000
     caacgaggat ggtttcactt ttcgtgaggt cacctttgcg gacgtggttc tggctgtcgc      3060
     tcacttttca tctcaagcaa agggggagga tgggatacct caaagcgtta tagcgaaatc      3120
     tctcccagtc ctaggacatc tcctggtgac cttatttaat gcctcactct cctgtggggt      3180
     ctttcctggt gcctggaaga acgctcattt ggtgcccctt aaaaagaaac ctattccatc      3240
     tactgtttcg gacttccgtc caatagccct tttgagcttt ctctctaagg ttctggagaa      3300
     gatcgtacat gagcagatct ccgaattttt agcttcaaaa aacattcttg atcctttcca      3360
     gactggtttt cgacacaacc attcgacgca gacagcacta ctaaaactga ctgaggacat      3420
     caggactggc atcgacagtg acaaacagct actcaccatt ttgctactgg tttctctagg      3480
     tcggtggtcc tgtgggtcat gtcttattta tctggacgta accaaagagt ggttactaaa      3540
     ctaaacggtg aatcttcttg gctaacaacc aaccttggcg tcccacaggg ctcgatcctg      3600
     gggcccttac tgttcagcat ttacatcaac gatctccagg aggtgttggc cggttttcgg      3660
     gggcccaagg ggttactgac cgacagtgtc gcccatttac tctacgcgga cgatctgcaa      3720
     acctacactc aggtcacaag agataatctt cgtgagggtg tggatcgcat gtcagcagca      3780
     gcgcgggctg tgtcggattg ggcatctcac aatgctctgc acctcaacac tggcaagact      3840
     aaagctatca tttttggatc tgagtataat gtaaataaac tacaggggtt gaacttgccc      3900
     ggtgtcgagg tgcagacggg tgtttttgtt ccttttgtcg atgccgtaac taacctcgga      3960
     gtggtcatgg attcaaagtt gacgtggaaa ccgcaggtgg atgcagttag ccgaaaggtt      4020
     aacagagctc tttatgggct cagatctttt agatcctgta ccaacgaggc gttacgtaag      4080
     cagctggccg gcgctctggt catttctcac ctggattact gctctgtagt gtatcttgac      4140
     gtgtcggggg agctcgagac aagactgcag aggctacaga actcatgtgt gaggtacatt      4200
     tgcggggtgg ggaggtacga gcatatctct ccttacagga gaaagctggg ctggatgaat      4260
     attaaagaga ggagaactta tttcatggcg gtgttaatgt acaaggcgca cagcatgggg      4320
     caaccgccgt acctttcggc cctctttgag aaaaatcaat gtaggacctc gggcaggtcg      4380
     tcgcgagata tcactgtccc gggaacaaga accgatactg gcttgaaatc gtacagggtg      4440
     caaggcgctc gcctttggaa ttcgctcccg cgaggtatgc ggacactgcc ttcgctttcg      4500
     aggtttaaat tagcgatgcg gaactacctc ctgccgactc tcagcgaaac ataatttgtt      4560
     attgtatgcg cctgcgcctt gtatatttgt atattcgtga tctagtctgt gttaatgtat      4620
     gtatttatga aagattatgt aattacgcga catacactta atatatttaa gttgaaagta      4680
     ctgaacaata taagtaaggt agcactgcgt gacgtgtacc tgattcgata cctggtatta      4740
     tttaagaatt tcgattatga ccttgcacga attgtgatat ttgacggctg tgataaacag      4800
     caaatattta ttttattttt ataaagtatg aaacttttat atttactctg tactgtgcta      4860
     tgactgacat gatgtaattt tttgaaaatg ttttcgaata aataccttac ttacttactt      4920
     acttacttac ttacttactt acttacttac tataacggag cggcatcgtt attacagttt      4980
     ggtgtcgggg atttgatatt aggtttgcat ccggctgcga caaagtagta tgcgcacagc      5040
     tccgttggtc cgaatgcgtc gtgtgatagc tatttcaatt gccctgtgta cgcacagcgg      5100
     cgaaaggagt cgagagacgt cggcgtaaag gttggttcgg agtagtaagg ctaaccttag      5160
     attcacagag acgtgagcgc acacctctgc gcatcgtcgg tgactgtctc gctactttct      5220
     caaccctgtt tgcgcacatt ggcagagaga gcagagatac gtcggagtgt gagaggtagg      5280
     ttttcggaga ctctgggtat cgtccacgta tgctctagag gacgagactc gttgtcgttt      5340
     tagcttcctg attatatcgt gtgctcacga cgattatccg gaggatcgga gtaaggcgtg      5400
     tgaactagcc gtcacgcgtg ctcacaagac ggttttgtcg gcggtggtct aactctggct      5460
     ctccttgcag tatcgtgtgc tcacggtatt gcccggatcg aaagctcgag cagaactgct      5520
     tacggaatat atatatatat atatata                                          5547
//
ID   L2A-1_PPo   repbase;    DNA;    INV; 360 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2A-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-360
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3119-3119 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 360 BP; 114 A; 50 C; 31 G; 165 T; 0 other;
     tataaatatt attacaatac atacattata aatatattat ttattctcaa gtatttagtt        60
     ttattgttac atcttatttt atttattcta tacatatatc atatatcatc ttgcatattt       120
     atttttcttt cataaattca taataatacc gaaacgccgt aagcgtaggt ttttaattat       180
     tattgtataa aaatattttt cctgctgttt cgatgcccac gatacaggca ttgcctagtg       240
     tgggcatcac tagatcaatc acatttatca ctatttgtat ttatctttta attggttata       300
     acttttattg ttaattatta atctgttttc aataaatttc aatttcaatt tcaatttcaa       360
//
ID   L2B-1B_CQ   repbase;    DNA;    INV; 1597 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_CQ;
KW   L2B-1B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1597
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 141-141 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
CC   The consensus is ~86% identical to that of L2B-1_CQ.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1171
FT                 /product="L2B-1B_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="CESALNLLLLKWKQCIEKGNIVLSVFVDLKRAFETID
FT                 RTKLIRVLKKSGIRGTVLKWFSSYLENRKQVTRYNDAVSAETAVDLGVPQG
FT                 SVLGPLLFILYINDIKQALKRVQVNLFADDTVLFVVGDSFDECFDIMNEEL
FT                 GGFSEWLKWKKLQLNITKTKCMLVTTRQTKDCRRSVQMDGGIVERVETMKY
FT                 LGVMLDEKLNFNEHIDYTIRKAARKFGVLCRINRYLTAETKVQLYNSLIAP
FT                 HFDYCSSILFLATQRQMKRMQVLQSKIMRLILRCDRLTPRRSMLECLQWMS
FT                 VKQRIEYNTLVFVFRVKERMAPQYLTEAMVRGRDIHEHDTRGADDLRLQIW
FT                 RKACTQNSLFYKGFKLYNQLPEAAKMTSNINEFKRSCKEFVRQRPLE"
XX
SQ   Sequence 1597 BP; 492 A; 310 C; 427 G; 368 T; 0 other;
     gtgcgagtcg gcgctgaatc tcctgttgct gaagtggaaa cagtgcattg aaaaaggaaa        60
     tattgttctg tcagtcttcg tagatttgaa gcgggccttc gagaccattg accggactaa       120
     attgatacgt gtgctgaaga aaagcgggat tcgtggaacg gtcttgaaat ggttcagcag       180
     ttacctagaa aaccggaagc aggtcacgag gtacaacgac gcagtctcag cggaaacagc       240
     agtggatctt ggagttccac aaggaagcgt gctagggcca ctattattta tcctctacat       300
     aaacgacatc aaacaggcgc tgaagagagt acaggtaaac ctgttcgccg atgacacggt       360
     actatttgtt gttggtgaca gcttcgatga gtgttttgat ataatgaacg aagagctggg       420
     cgggttctca gaatggttaa agtggaaaaa actgcagctg aacattacga agacaaagtg       480
     catgttggtg acgacacggc agaccaagga ttgcagaagg agcgtacaga tggatggagg       540
     aatcgtggag cgtgtcgaga cgatgaaata cctcggagtc atgctggatg aaaagctgaa       600
     tttcaacgaa cacatcgatt acactattcg gaaagcagca cgaaagtttg gcgttttgtg       660
     taggattaat cgttacttga cagcagagac aaaggttcag ttgtacaact cgctgatcgc       720
     gccgcacttc gactactgct catcgatctt gttcttggca acacaacggc aaatgaagag       780
     gatgcaagtt ctccagagca aaatcatgcg gctcatcctt agatgtgatc gactgacacc       840
     aagacggagc atgctcgaat gtttgcagtg gatgtcggtg aagcaacgga tcgaatacaa       900
     cacacttgtt tttgtttttc gtgtgaagga aaggatggca ccacaatact tgacggaggc       960
     catggtacgc ggaagggata tccatgagca cgacactaga ggagctgacg atctcaggtt      1020
     gcagatttgg aggaaggctt gtacacagaa ctcgttgttt tacaaaggtt ttaaactata      1080
     caaccagctt ccagaggcag caaagatgac gagcaacata aacgagttta agcggagctg      1140
     caaggagttt gtacggcaac ggccgttgga gtagaagtga cccacgatgg tactgtgacg      1200
     aagagcacgt tatgacggtc ggccatcttc attatcggta cacatcgcat gggatcactt      1260
     tgggccgcat atgataaatt tattcaaaag taacgcgaat ctgggcgcgg tttaacccta      1320
     tgggctcata tgtgcgtgga atagcaaatg gttccaatac cctaaatgga taaaaatact      1380
     gcaatctgat tgataaaatg actcgacact ggatttgtta gagcgccttg agataggaca      1440
     cgagagaaat ggatgggcat acacggaagt agagtcaaga ttacaggaca ctctcaaaac      1500
     acgaacgacg aattatcgaa agatatctgc tcgtaaacct tccatgctac aaaaactgtg      1560
     tatgggtaag aggtgggcca tccaaggaaa aaaaaaa                               1597
//
ID   L2B-1_AAe   repbase;    DNA;    INV; 4842 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4842
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1413-1413 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1925..4681
FT                 /product="L2B-1_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRSHFDELKLLIEEVKPKIVILSETHVTPYHCVEEFN
FT                 IPNYSNEVCLSRSAHTGGIWIYVDRQLEYSVISNTVMGDNWFLAVEVKSGA
FT                 LSGLYGGVYHSPSTSDVQFVSYFETWLNSVLIDEKTNVIVGDFNIKWNESG
FT                 CAAELKNVTDAAGLVQKVEEATRTGPSSSTLIDLVFTNSKSCVATVVGEMK
FT                 ISDHETICISVGESIRISVPEKRTARISWRRYSKHRLQNILRNDPTLRETS
FT                 GSIDEAAERLSTALVSAVNQLIDVCNKSQTRTQSWYGPCLRNLKYDRDRAY
FT                 RKFEESRSGDDWERYKLLRNCYVHELRMAKNNSVAREIRDCQGDSKRMWKC
FT                 LKSLISPSGRSSTQIKINGSRSEEETARSLNEYFVASVQEIHNSIAAPANE
FT                 LVEENFDSDARFCSFRPVTTAKLQETVIALKDCAGVENVTKRVLLDAFDVI
FT                 DIHLLEVINRSLQSGVFPKTWKRSLVIPIPKVPKSTSPEDYRPINMLPLYE
FT                 KILETLAKEQVMEYVNDNGIILEEQSGFRKHHSCETALNLLLLKWKQSIER
FT                 GKIVMAVFVDLKRAFETIDRSKLKKVLKRYGIQGIALKWFGSYLENRSQVT
FT                 RYNDLVSPETVVELGVPQGSVLGPLLFILYINDIKRVLRKTEVNLFADDTV
FT                 LFVEGSNYNECFQIMNEELKYFSEWLKWKKLKLNITKTKYMVITTRSQINC
FT                 AGEVRIDGEIVERVKSMKYLGVILDEKLNFCDHINYSIRKAAQKFGILCRV
FT                 SRYLPMDSKVTLYKSIIAPHFDYCASILFLASKTQLKRMQILQNKVLRLIL
FT                 KCNRLTPRAAMLNCLQRMSVRQRIEFNTLVFIFRVVKGMAPQYLTCTVRYG
FT                 TDVHRYETRHAGDLILLNCRKTCTQNSLFYKGYSLFNQLPEDAKRTNNLRD
FT                 FKSLCSIFVKQRSIE"
FT   CDS           join(256..558,537..1376,1346..1864)
FT                 /product="L2B-1_AAe_1p"
FT                 /translation="MPAEMDGEEREHSFYSQQPCAQCALPIEDRNTCVECF
FT                 GRCKLAIHVHYLPGATNAEIELLQKIKNAVFVCDACLSLAEFDDGHSEKRL
FT                 DEISNKLNDLAILTKRSCDLVTEMLKNFDQVVRRVVCEELARANKRNVVSK
FT                 CEKNELPPRRMLTRSSAKRRKTDESENCVEVDSTPKSTFAEVLKKRVEKSV
FT                 VDNDPKKDEPIQKPNPVVIVRPKTGVQVEDVRSELRKKVDARNLNVARVSS
FT                 GKNGEVVIALKDEESVELLKEKVKENMGGRYEVSVRENLKPTIKLIGMSEA
FT                 MDEEDLKETLVDQNEAXSNLGHFKLCKTYCNRKLRYNNVSAIVELDAETFS
FT                 KVMQEEKLNCGWDRCRVVDGLQVTRCYRCCAFNHKRSAVLCFQSQKIGMSE
FT                 AMDEEDLKETLVDQNEAFSNLGHFKLCKTYCNRKLRYNNVSAIVELDAETF
FT                 SKVMQEEKLNCGWDRCRVVDGLQVTRCXRCCAFNHKSKDCKAETPTCPVCS
FT                 ENHQVQECKSSSKQCVNCKKMNAERNLKHDMNHAAWSEICPVYQRHFEQRK
FT                 SLVDYSK"
XX
SQ   Sequence 4842 BP; 1551 A; 813 C; 1207 G; 1269 T; 2 other;
     tttttttttt actgtgctga cgctgtgata agtttaatga ttttatgacg gaacactaaa        60
     tatatgtttt atgtgtgtaa actttccgcc gttttaatca aaccttgtcg atgagtcctt       120
     tgaacattgt gcgtaactgg taaaagttaa gttcagttag tacgtgccga gtaactgtgg       180
     tattccagtg ataatttgtt agcattactg taccgaagtc ctcttatatt gatcgtttgc       240
     aatcacccgg gcgaaatgcc cgcggagatg gatggtgaag agagagagca cagcttctat       300
     agccaacaac catgtgctca atgtgctctg cctattgaag atcgaaacac ttgtgttgaa       360
     tgcttcggtc gatgcaagtt ggctatccat gtccactatt tacctggtgc gacaaatgcg       420
     gagatagaac tgttgcagaa gataaaaaat gctgtgtttg tatgcgatgc gtgcttgagt       480
     ctggctgagt tcgacgatgg acacagtgaa aaaagattag atgaaatttc gaataaacta       540
     aacgatcttg cgatcttgta acggaaatgc ttaaaaattt cgatcaggtt gtgcgaagag       600
     ttgtatgtga agaattagcg cgggcaaata agcggaatgt tgtttccaaa tgtgagaaaa       660
     acgaacttcc tcctcgacga atgcttactc ggtcttcggc caaacgcagg aaaactgatg       720
     agtcggaaaa ttgtgttgaa gttgacagta cgccaaagtc gacttttgct gaggtgctga       780
     aaaagcgtgt tgagaaaagt gtggtagata atgatccaaa gaaagatgag ccaattcaga       840
     aacctaaccc agtagtcatc gttagaccta agacaggtgt acaggttgaa gacgtccgat       900
     ccgaactacg aaaaaaagtg gatgcccgaa atttgaatgt agcacgggtc tccagcggta       960
     aaaatggtga agtagtgatt gcactgaaag atgaggaaag tgtcgagttg ttgaaagaga      1020
     aagttaaaga gaacatgggt ggtcggtatg aagtgagcgt tcgggaaaat cttaaaccga      1080
     caattaaact gatcggcatg agcgaagcaa tggatgagga agatcttaag gaaacattgg      1140
     tcgatcaaaa cgaagctttm agtaatcttg ggcatttcaa attgtgcaag acttactgca      1200
     atcggaaact gcggtacaat aatgtcagtg caattgttga actagatgct gaaaccttca      1260
     gtaaagtgat gcaggaagaa aagctaaatt gtgggtggga tcgctgtcga gtggttgatg      1320
     gtctgcaagt cacgcggtgt tataggtgtt gtgctttcaa tcacaaaaga tcggcatgag      1380
     cgaagcaatg gatgaggaag atcttaagga aacattggtc gatcaaaacg aagctttcag      1440
     taatcttggg catttcaaat tgtgcaagac ttactgcaat cggaaactgc ggtacaataa      1500
     tgtcagtgca attgttgaac tagatgctga aaccttcagt aaagtgatgc aggaagaaaa      1560
     gctaaattgt gggtgggatc gctgtcgagt ggttgatggt ctgcaagtca cgcggtgtwa      1620
     taggtgttgt gctttcaatc acaaaagcaa agattgcaag gctgaaacac cgacgtgtcc      1680
     tgtgtgtagt gagaatcatc aggtgcaaga atgcaaatcc agttcgaaac agtgtgtaaa      1740
     ctgtaaaaaa atgaacgctg aacggaattt gaagcatgac atgaatcatg ctgcatggag      1800
     tgaaatatgc ccagtgtatc agagacattt cgagcaacgg aaaagcttag tcgactattc      1860
     gaagtagcaa tcacggccta atcatgaaga acagtgtgat gtagtgtatt tgaatatagc      1920
     tggaatgcga tctcattttg acgaattgaa actgctaata gaagaagtga aaccgaaaat      1980
     tgtaattttg agtgaaactc acgtgacgcc ctatcattgt gtggaagaat ttaatattcc      2040
     gaattactca aatgaagtat gcctatcgcg atcggcccat actggcggaa tttggatata      2100
     cgtagatcga caattagagt actctgttat ttcgaacact gtaatgggag acaactggtt      2160
     cttggctgtc gaggtgaaaa gtggagcatt atctggactt tatggaggcg tgtatcattc      2220
     tcccagtacc agtgacgttc agttcgttag ttattttgag acctggctga atagtgtgtt      2280
     aatagatgaa aagacaaatg taatagtggg cgactttaac attaagtgga atgaaagtgg      2340
     ttgtgcagcg gagttaaaga atgtgactga cgcagctgga ttagttcaga aagtcgaaga      2400
     agctacgcgt actggcccta gtagtagtac gttgatcgat ttggtgttta ctaactcaaa      2460
     gtcttgtgta gcgaccgttg taggggagat gaaaatttcg gaccatgaaa ctatttgcat      2520
     tagcgttggg gagtcaattc gaatctctgt gccagaaaaa agaacggcaa gaatctcatg      2580
     gagacgatat tctaaacatc ggttgcaaaa catcctgaga aatgatccca cgctgagaga      2640
     aaccagcgga tccattgacg aagccgccga acgccttagc acggcgcttg tgtctgcggt      2700
     gaaccagttg atagacgttt gtaataagag ccaaactaga acccaatcct ggtatggtcc      2760
     gtgcttaaga aatcttaaat atgacagaga tcgtgcttac cgaaaattcg aagaaagcag      2820
     aagcggagat gactgggaga ggtacaaatt gctgagaaac tgctatgtgc atgagctgcg      2880
     gatggcgaaa aataattcgg tagcccgaga aataagagat tgtcaaggag attcaaagag      2940
     aatgtggaaa tgtttgaaat ctctcatctc gccaagtgga cgatcgtcga ctcaaataaa      3000
     aataaatgga tcacgatcag aagaagagac cgcaaggagc cttaacgagt actttgtggc      3060
     aagtgttcaa gaaatacata atagtatcgc agctccagca aacgaattag ttgaagagaa      3120
     ttttgactct gatgcaagat tttgttcgtt taggccggtt acaacggcta aactgcagga      3180
     aacagtgatc gcactgaagg attgtgcagg agtggaaaac gtgacaaaac gtgtattgct      3240
     ggatgctttt gacgtgattg atatccattt gctagaagtt attaatagat ctctacaaag      3300
     tggtgttttt cctaagacgt ggaaaaggtc attggtgatt ccaattccaa aagtacccaa      3360
     atcaacgagt cctgaagact acagaccaat aaatatgcta ccattatatg agaagatatt      3420
     ggaaacattg gcgaaggagc aggtaatgga gtatgtaaat gataatggga taatacttga      3480
     agagcaatcg ggattcagga agcaccattc atgcgaaact gcgctgaact tgctgttgtt      3540
     gaaatggaag caatcaattg aacgtgggaa gatagtcatg gcagtatttg ttgatctgaa      3600
     gcgagcgttc gaaaccatcg accggtcgaa gttgaaaaaa gtgttgaagc gatacgggat      3660
     ccaagggatt gcattgaagt ggtttggtag ttatttggag aaccgcagtc aagtgactag      3720
     gtacaacgac ttggtatcac cagaaacagt cgtagaactt ggtgtgccac aaggcagtgt      3780
     tctagggcct cttttgttta ttctgtacat aaacgatata aaacgagtgc ttcgaaaaac      3840
     ggaggtgaac cttttcgctg atgacacagt tttgtttgtc gaagggagta actacaacga      3900
     gtgttttcaa ataatgaacg aagaattaaa gtacttctcg gaatggttga aatggaagaa      3960
     gttaaaacta aatattacca aaaccaaata tatggtgatt acgacgcggt ctcaaataaa      4020
     ttgtgctggc gaagtgcgca ttgatggcga aattgtggaa cgagtgaaat caatgaaata      4080
     tctaggagta atactggatg aaaaattgaa tttttgtgat cacatcaact actcgattag      4140
     gaaggctgct caaaaatttg gaattttgtg tagagtgagc cgttatcttc cgatggattc      4200
     aaaggtcaca ttgtacaaat cgataatcgc gccccatttc gactactgtg catcgatact      4260
     cttcctggct tcgaaaacac aattgaagcg aatgcagatt ctgcaaaaca aagttctgcg      4320
     tttaattctg aaatgcaatc gtctgacacc ccgagctgca atgttgaact gccttcaacg      4380
     gatgtccgtt cggcaacgaa tagaatttaa caccttagtt ttcatattcc gtgtagtcaa      4440
     ggggatggct cctcaatatt tgacgtgtac tgtaagatat ggaacagatg tgcatcgata      4500
     tgaaacaagg catgcaggag acctcatatt gttgaactgc aggaaaacat gcacgcaaaa      4560
     ttcgctgttc tataagggct atagcttgtt taaccaacta ccagaagatg ctaagcgaac      4620
     caacaatctg cgggacttca aaagcctctg ctcaatattt gtaaaacaga gatcaataga      4680
     ataaacgaca gagagaaatg gatgggcgta cacggaagtg gagtcagatt cagggatctc      4740
     tcataagctg gtggaaaaca ttatcgaaag atatctgctc gtaaaccttc catactacaa      4800
     aagatgtgta tgggtatgtg gtgggccatc cgaagaaaaa aa                         4842
//
ID   L2B-1_AG    repbase;    DNA;    INV; 5227 BP.
XX
AC   .
XX
DT   29-OCT-2010 (Rel. 15.10, Created)
DT   29-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L2B clade non-LTR retrotransposon family from Anopheles
DE   gambilae.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; Ag-L2-2;
KW   L2B-1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5227
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [2]
RP   1-5227
RA   Kojima K.K. and Jurka J.;
RT   "CR1 clade non-LTR retrotransposons from Anopheles gambiae.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as Ag-L2-2
CC   [2] Consensus update and characterization as L2B. This consensus
CC   is generated from 7 sequences with >91% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           364..1710
FT                 /product="L2B-1_AG_1p"
FT                 /translation="MSCKKCIRPVLISDDPVTCMGICHGQFHRACTRLTKP
FT                 AAKMINDIVNVKYWCDDCLEXEGSGASKSDEMLEIKAILENIKLSIVAIXE
FT                 KIKTSVCEVVSIGITNMQKSSIDAIETKLASSVSDAVNTGISSIEKKLNAK
FT                 VACNMPQKNLVEKSDATSLILQDTEHTDSIGTTEWTTLTRKRKRTNSGRME
FT                 TPRNTKLPNVSKIDNQVKNNTGTLIIIPKIDQTCDKTRSDMRANLDPRIHK
FT                 ITNFRNGKPGQIIVEWASQEGIDHIRKEIQTSLGEKYLTSLPTRKFRIIGL
FT                 SENYKEDEMVDLIKTQNNGFSTAYIKILGKFEKADYKYKKYNVIIEVDHDT
FT                 AIYLDREEKINIGXDRVYIHESFHIMRCFKCGQFGHKSTTCDNEETCSKCS
FT                 GKHKTSDCKSSSESCINCSTQNMQRGLKLNTAHSAFSKECPTFKWLKSRKQ
FT                 QLSK"
FT   CDS           1747..4515
FT                 /product="L2B-1_AG_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLYMNVAGLSSSHIMLNHIVQTIQPWLVFITETHIVE
FT                 AEAFEQFGIPGFTAISCLSNSRHTGGVTIFIKESITYKILINEARDGNWFL
FT                 SISATISKKSFIFSLVYHSPSSSNAHFVNLLEWWFDKFLDLGEDNILIGDF
FT                 NINWLNSAESKPLRQLMESLNMNQIITEETRITQRSKSLIDHVYCNHNSFI
FT                 AKTDPTLKIADHETIVLTLQKCNVSLNNKKTFKSWKRYSKDKICSSVNVNL
FT                 PITNLCLHDKAHRLEQVIKNSIAQLIDVAVVNNNNYQKWYTGDLQCKKQRL
FT                 DKRYFTFLKTNSELDWLSYKTSRNCYLRELRMTKRNYFERKINESKNDSKQ
FT                 LWKLLKSWLQTGSNETGRVQFNDKIIEDESEIARLFNEHFVNSVMDIHKSI
FT                 PQCNEPEQIKNMEQTRKRFHFQPIDIQTLQRICFKLKGASGLDDINGKVIR
FT                 DCLSVTGDTLLNIINDSLITGQFPNTWKESIVIPIPKINGTIIAEEFRPIN
FT                 MLNTLEKILELVVKEQLVQYLKENKLLVPEQSGYRESHSCETALNLVLEKW
FT                 KTNLNKKHITLAVFLDLKRAFETISRPLLINALKNFGIVGQELDWFKNYLE
FT                 GRTQRTRFKTTTSESLENSLGVPQGSVLGPILFIMYINDMKNVLKFCDINL
FT                 FADDTVVFLSCSSVKEATTKLNEDLASLDQWLKYKKLKLNAKKTKMLVLSR
FT                 TKTLFNLQINIDDEAIERVKEIKYLGVTIDEELKFKSHIDNIIKKMAKKCG
FT                 IICRLKKDLSVFAKIQLYKSLMAPHLDFCPSILFMANAGQTTRMQKLQNRA
FT                 MRAILGCGWYTSSLIMLDTLKWMSVKQRVMYQTMIFVYKLLNSHLPQYLCD
FT                 RVVRGLNVHDYNTRRAADPRVPKVETVSAMNSLFFKGIQTFNMMPRVVCNA
FT                 ETIPQFKRLCATHIKATIV"
XX
SQ   Sequence 5227 BP; 1904 A; 814 C; 1005 G; 1498 T; 6 other;
     ttctcgctgg tgtgcgatga tgagtgaggt gtagtttgtg twgctctccc tgttgaagtg        60
     tttaaagtgg tgaaaaggtg taaatagtgt ggaaattttt gttacacatg acgactgaat       120
     aacaggactt tgatatgtag tgaagttgta tcgagagacg attgaaatac tcttgatttt       180
     aattaattta ttttgtgttg tttcagtagc tgtaaacagt ttcaatgtgt tagtgaactg       240
     tacgaacgaa ggaggatctc ctgaaatagc gtataacgtg tattagtatt agtagtaagc       300
     aaaacgggca tcgatcatta ctaatacast cggtgtgctg atgagtgttt gtaaacactc       360
     gtcatgagtt gcaagaaatg tataagaccg gtgttgatta gtgacgaccc ggttacttgt       420
     atgggtatat gccatggtca atttcatcga gcttgcacaa ggcttactaa gccggcggct       480
     aagatgatta acgacatagt gaacgtgaag tattggtgcg atgattgctt ggaacwagaa       540
     ggctcaggtg catcaaaatc cgacgaaatg ctagaaatca aagcgatttt agaaaatatt       600
     aaattgtcaa ttgttgctat cgakgagaaa attaaaacga gtgtgtgtga agttgttagc       660
     attggtatta ccaatatgca gaaatcttcg atagatgcta ttgaaacgaa attggccagt       720
     agtgttagtg atgcggttaa caccggcatc tctagcattg agaaaaaatt aaatgcaaaa       780
     gttgcatgca atatgccaca aaaaaacttg gtagaaaaat ctgatgcaac ttcccttatt       840
     ttgcaggata ctgaacacac tgattcaata ggtacaacag aatggacaac tctaactcgt       900
     aaaagaaaaa ggacaaatag tggaaggatg gaaactccta gaaataccaa acttcccaat       960
     gtctcaaaaa tagataatca agtaaaaaac aatactggga ctttaataat tataccaaag      1020
     atagatcaaa cttgtgacaa aactagaagc gacatgagag cgaatttgga tccaagaata      1080
     cataaaataa caaatttccg taatggtaag cctggtcaaa ttattgttga atgggcttca      1140
     caagaaggga ttgaccatat aagaaaggaa atacagacat ctttgggtga gaagtatcta      1200
     acttccttgc caactagaaa gttccgtatt atcggtttgt cggaaaatta caaagaagac      1260
     gaaatggtag atctcatcaa aacscaaaat aatggctttt caacagcgta catcaaaatt      1320
     ttgggaaaat ttgaaaaagc tgactataaa tacaaaaagt ataatgtcat aattgaggtg      1380
     gatcacgaca cagcaattta cttagacaga gaagaaaaga ttaatattgg attkgataga      1440
     gtctacatac acgaatcttt tcatatcatg agatgtttta agtgcggaca atttggtcat      1500
     aaaagcacaa catgtgataa tgaagaaact tgttccaaat gtagtggtaa acataaaaca      1560
     tcagattgta agtcgtcatc tgaaagctgc attaactgtt ccacccaaaa tatgcaaaga      1620
     ggattaaaac tgaacactgc tcattcagcc ttcagtaaag aatgtcccac gtttaaatgg      1680
     ttaaaatcaa gaaaacagca attgagtaag tagcaattgc agaataaaca aagtaagaac      1740
     atacagatgt tatacatgaa tgtggctgga ttgtcgtcta gtcacataat gttgaatcat      1800
     attgtacaaa caattcaacc ttggttagtg tttataaccg aaacacacat tgtggaagct      1860
     gaagctttcg aacagtttgg aattcctgga ttcacggcaa tttcatgctt atccaattct      1920
     cgacatactg gaggtgtgac tatatttata aaagagtcga taacttacaa aattttaatt      1980
     aatgaagctc gcgatggaaa ctggttttta tcaatttcag cgacaataag taagaaatca      2040
     ttcatattta gtctagtgta ccattcacca agttctagca atgcccattt tgttaattta      2100
     ctcgaatggt ggtttgataa atttcttgat cttggagaag acaacattct aataggagat      2160
     tttaacatca attggttgaa ctccgcagaa tctaaaccac tgagacagct aatggaatct      2220
     ttgaacatga atcagattat tactgaggaa actcgaataa ctcagcgaag taaatctcta      2280
     atagatcatg tatactgcaa tcataactca ttcatagcga agactgatcc tacattgaaa      2340
     atagcagacc atgaaacaat tgttctaact ttacaaaaat gcaacgtttc attaaacaat      2400
     aaaaaaacat ttaaaagttg gaaaagatac agtaaagaca aaatatgttc atctgtgaat      2460
     gttaatctac caatcacaaa tttatgtttg catgataaag cacaccggct agaacaagta      2520
     ataaaaaata gtatagctca actcattgat gttgctgtag taaataataa caattatcaa      2580
     aagtggtaca ccggggattt acaatgtaaa aagcagcgct tggacaaacg ctacttcaca      2640
     tttttaaaaa ccaattcaga gttagactgg ttatcttata aaaccagtag aaattgctac      2700
     ctacgtgagc tcagaatgac gaaaagaaat tattttgagc gaaaaataaa tgaatcaaaa      2760
     aatgatagca aacaattgtg gaagttgtta aaaagttggt tgcaaacagg ttccaatgaa      2820
     acaggtaggg tgcaatttaa tgacaagata atcgaagatg aatcagaaat tgcccggttg      2880
     tttaatgaac actttgtcaa tagtgttatg gacatacata aaagcattcc tcaatgcaat      2940
     gaaccagagc aaattaaaaa tatggagcaa acaagaaaac gatttcactt tcagccgatt      3000
     gatattcaaa cactccaaag aatctgtttc aaattgaaag gagcttctgg acttgatgat      3060
     ataaatggta aagtgatacg agattgtctc agtgtcacag gggacacgtt acttaacatt      3120
     attaacgatt ctttgattac gggacaattc ccaaatactt ggaaagaatc aatagtgatt      3180
     cccatcccta agattaatgg tacaatcatt gcagaagagt tcagaccgat aaatatgcta      3240
     aacaccctag aaaaaatttt agaactcgtg gtgaaggagc aattggttca atacttaaag      3300
     gaaaataaat tattagttcc agaacaatca ggatatagag aatctcattc ctgtgaaaca      3360
     gctctgaacc ttgtacttga gaagtggaaa accaatttaa acaaaaaaca tataacatta      3420
     gctgtctttt tagatttgaa aagagccttt gaaacaatat cgagaccttt gttaatcaat      3480
     gccttaaaaa acttcggtat tgtgggacaa gaacttgatt ggtttaaaaa ttatttagaa      3540
     gggagaactc agagaactcg ttttaaaacc acaacatcgg aatctcttga aaactcattg      3600
     ggagtccccc aaggaagtgt acttggtcct attttgttta ttatgtatat aaatgacatg      3660
     aaaaatgtat taaaattttg tgatattaat ctctttgctg acgacacggt ggtctttctc      3720
     tcttgtagct ctgtaaaaga agcaacaacg aagctgaatg aggatctggc ctcgctagat      3780
     caatggttga agtacaaaaa attgaaatta aatgcaaaaa aaactaaaat gttagtgctg      3840
     tcccgtacca agactctctt taacttacag atcaatattg atgacgaggc catagagaga      3900
     gttaaagaaa taaaatatct tggagtcaca atagatgaag aactgaaatt taaaagccat      3960
     attgataata tcattaagaa aatggcgaaa aaatgcggga ttatttgtcg actaaaaaaa      4020
     gacttaagtg tttttgcaaa gatacagctt tacaagtctc ttatggctcc acatctggat      4080
     ttttgtccgt caattctttt tatggctaat gcaggacaaa cgacaagaat gcaaaaactg      4140
     caaaacagag caatgcgagc tattctagga tgcggatggt atacgtcgtc attgattatg      4200
     ctggataccc taaaatggat gtcggtgaaa cagcgggtaa tgtaccaaac aatgattttt      4260
     gtttataaac tcctgaacag tcacttgcct caatatcttt gtgatcgggt tgttcgagga      4320
     ttaaatgtgc acgactacaa cacaagaaga gcagcagatc cgagagttcc taaggttgag      4380
     acagtatcag caatgaactc tttgtttttc aaaggcatac aaacttttaa tatgatgccc      4440
     agagtagttt gtaatgcaga gactataccc caatttaaga gactgtgtgc aactcacatc      4500
     aaggccacta ttgtatgaag tatgactgtt gtgacaatag taaggaagta gattaattta      4560
     gaaaagacga aatccgcgaa tgcgtgaatg aaatataaat tgataaataa atgttttagt      4620
     cacttgttgt gtaaacctca cttgtcatca ccagctttga tgatgatgat gattttagct      4680
     ttttttttgt tttttgcttt tatctttttc tatatatctt tttaaaatta aatttaaaaa      4740
     agttaaaata aataaacaag ttaacacaaa aacaaaaata aaggaaaaga atgagtcgat      4800
     atagcattga gacacgcgcg cgaaaaatag tatatataat ttgataactt tcctgggggt      4860
     agtggtccgg tccaatgcaa cccgaaacgt gaatcgtcat aaattgtaca gtaacggaat      4920
     aaggaaaaag tacgctgtga gatagttttg aaagtggttc tctatcgcca ttagttggtt      4980
     gtaggttgaa ccggctatac aagagaaacg aaagcaggta ccatgtattg agaccgacca      5040
     tgactgcttc ataaagagga gaagaaagaa gttttgtagc caccacgttc ttgaaatact      5100
     tacttgcctt atgatttgat tatttgcata attactaatt tacaacaaca caattatcga      5160
     taagatacaa tcgttcctct caatactata tcggggtaag aggtgggact catcatcatc      5220
     atcatca                                                                5227
//
ID   L2B-1_BTa   repbase;    DNA;    INV; 4362 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4362
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 712-712 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           450..1217
FT                 /product="L2B-1_BTa_1p"
FT                 /translation="MVSVGTERKQDNGVKQTEYISFNEILKVGTDNKIAFK
FT                 GRDDKLGKEDEPKGHEGEKPTLKRRKWYERDFEGQRYIWVVEDKYTNNLGT
FT                 EIRNLLGNVNGKVVVPMRTKRESLDWLGHLTDLKDEMISGDVIVWAAGRID
FT                 LAKEQDDRAWRAIELLLGRLPEGVRLVFLGLNERRDFQNEWLGGKINRRIE
FT                 GMNHRIIRILMNKPLDTLFVRFQGLMFGDYWGINDEVPGKLKRQGINKAAR
FT                 TILEEMSRLRLLKGF"
FT   CDS           1474..4245
FT                 /product="L2B-1_BTa_2p"
FT                 /translation="MGETHITDNVTDGELKIEGYNLIRANSYSTHTGGVVM
FT                 YVKKGLDCLGTEVISNKLFWVVSVGIKKGKVEKIKIDMLYRSPNTSLRGFL
FT                 DWFEVRYSKEIESVREGLVLGDFNVRWDLDRDWGRKKLKEITDYLGMEQLV
FT                 KEPTRVVKNSSSKIDLLFQWGRLGKECVCKVVHERKVSDHSWVKAVVKGIG
FT                 GVKSRVNKILKKRVFDKNKFSDLLVKLNSESKEVQVEKLYEESEIGARQCV
FT                 TTKEKLIKIRRVRWWDEELKKLRVDRDNAYRNWIEEESDERWKRYKVLRNL
FT                 FVKIYRKKKRNYYEENLRKNGRDGRKTWRILNELLGRGKEIGDDSTVVIDG
FT                 VKSKGIGAANDLNKFFVDSVKSLRDCNDEESRECNDEDGCMNGDEYEYPQT
FT                 DKAYWKEWRLADLEEIQGLVSVMKNSNSEYPLCSVVGKEMIENFSKILLEI
FT                 VNKSLTEGIMPKKLKIXRVTPIRKIANSEKAEDLRPINSLPFVEKVIEGIV
FT                 VKRLNEYLXEKGTIVDEQRXFRKRMGPEELIQXLMKKWREREKKGKTTVAV
FT                 FLDLKRAFETVNRXMLITKLKXIGIADGVLKWFMNYLQDRRQKVAWGEKLS
FT                 DELCVELGVPQGSRLGPLLFLIYINDLKEVMKESELSLFADDTLVFSSEGD
FT                 IGKVAEVISRDLRRLGMWLKKNWLILNVQKTKYMVFEVGPGTWXGRIMIEN
FT                 FELERVRVMKYLGVWISEDLKMKEHIGKVAKEYRAKISMLWRVKDFIGKES
FT                 RKLVYNSLIGAKLNYCISLLGEASSKDIRNLQKGQNSAMRYILGCDKENRI
FT                 IDMLETLGWLCIELLIKARVFIFIYKMRRGLIDIRDRELLEILDRRKGRNL
FT                 ELKYNDARDVDSMLFFKGMRDYTLFGCEKWEELQLGAFRNRVWNELMKFQR
FT                 DNWGEGELLPRCYRWKEFGL"
XX
SQ   Sequence 4362 BP; 1596 A; 403 C; 1230 G; 1114 T; 19 other;
     tgtacagcat gtctagacgt agcaaccagt cgcaaaatgc gtatgcaaat tgattaactg        60
     tacaggacag gcaaaagtaa tcatccgtca aattatctga tgtgagctgt ttacagtcca       120
     agaagagaat tggctgaaag taggacatca tctgaggtgt acgtttcacc acatgataag       180
     ctgaaacacg gaggaatgat tttttccctc ctactccatg cttgattttt gactgtgcct       240
     ttgaattgtc tattcataaa tcggaggaaa aatctttcac aacacggaag caaactttaa       300
     agcaaacttt tacacggaag caaaaagcac gcttggagca aactttaatt aaattagagc       360
     aaatattaag tgctgaggtt gacttgctgg aaacagagaa aaagcagcta gatgtagcgg       420
     ctagtagcag ctatgatact gatgtggaaa tggttagcgt agggactgag agaaaacaag       480
     acaatggggt aaaacaaact gagtacatat cgtttaatga aattttgaaa gtaggaactg       540
     ataataaaat tgcatttaag ggtagagatg ataagctggg taaggaggat gaaccaaagg       600
     gacatgaagg cgagaaacca acactaaaaa gaaggaaatg gtatgagagg gatttcgaag       660
     gccagaggta catatgggtc gtagaggaca agtatacaaa caatctaggg actgagataa       720
     ggaatttatt agggaatgta aatggaaaag ttgtagtacc aatgaggaca aagagagaat       780
     cattggattg gttagggcac ttgacagatt tgaaagacga gatgatatca ggggatgtaa       840
     tagtttgggc agcaggtagg atcgacttag cgaaggaaca agatgacagg gcttggaggg       900
     caatagaatt attattagga agattaccag aaggggttag gttggttttc ttaggtttaa       960
     atgagagaag ggattttcaa aatgaatggc tgggagggaa gataaatcgt agaattgagg      1020
     gaatgaatca cagaataatt aggattttga tgaacaaacc cttagacact ttgttcgtaa      1080
     gatttcaggg attgatgttt ggggattatt gggggattaa tgatgaggtt ccggggaaat      1140
     taaagagaca gggaataaat aaggcagcaa gaacaattct agaagaaatg agtaggttga      1200
     ggctgctcaa gggtttttag gtgatagaca acagctcaac gttagaactg gcttaaatag      1260
     ggaaaggaaa attaagggaa ttcagaaggt agggattgtt aatgaaatta aaagttcaaa      1320
     gagttcaggc gagtacttaa tagaaataat gagtgggtaa aagttaatag ggatgtagga      1380
     ttaaaaattt ggtatgggaa tgtaaacggg ttgattagaa gaattgatga aattagggat      1440
     tgggcaaatg agggtaaatt tgatatttta ggaatggggg agacgcatat aacggataat      1500
     gtaacggatg gggaacttaa aattgaggga tataatttga ttagggctaa ttcgtacagt      1560
     acgcatacag ggggggtggt aatgtatgtg aaaaagggat tagattgttt agggactgag      1620
     gtaatatcaa ataaactatt ttgggttgtt agtgtgggta taaaaaaagg gaaagtagaa      1680
     aaaattaaga tagacatgct ttatagatcg ccaaacacaa gcttgagggg atttttggat      1740
     tggtttgaag taaggtattc taaagaaatt gagtcagtta gggaaggtct ggttttaggg      1800
     gattttaatg taagatggga tttagatagg gactggggaa gaaagaagtt aaaagaaatt      1860
     actgattatt tagggatgga acagctggta aaagaaccaa caagagtagt aaaaaactca      1920
     tcctcaaaaa ttgatttatt atttcagtgg gggaggctag ggaaagaatg cgtgtgcaag      1980
     gtagtgcacg agagaaaagt tagtgatcac agctgggtaa aagcagtagt gaaggggatt      2040
     ggaggggtaa aaagtagggt aaataagatt ttgaaaaaaa gggttttcga taaaaataaa      2100
     ttttcagatt tgttagtcaa actaaattct gagagtaagg aggtacaggt agaaaagttg      2160
     tacgaagaat cagagatagg ggcaagacaa tgtgtaacta ctaaggagaa attgataaag      2220
     atcagaaggg tcagatggtg ggatgaggaa ctaaaaaagt tgagagtaga cagggataat      2280
     gcgtatcgaa attggataga agaagaatct gatgagagat ggaaaagata caaggtactt      2340
     agaaacttgt ttgttaagat ttatcgaaag aaaaagagaa attattatga ggaaaactta      2400
     agaaagaacg gtagggatgg caggaaaacg tggaggatat taaatgagtt attagggaga      2460
     gggaaggaaa taggggatga tagtacagtg gtgattgatg gagtaaagtc aaaagggatt      2520
     ggtgctgcaa atgatttaaa taaatttttt gttgatagtg tcaaaagtct tagggactgt      2580
     aatgatgaag aatctaggga atgtaatgat gaggatgggt gtatgaatgg ggatgaatat      2640
     gaatatccac aaactgataa ggcgtattgg aaagaatggc gcctggctga cttagaagaa      2700
     atacagggac tggtaagtgt aatgaaaaat agtaatagtg aatatccact atgcagtgtt      2760
     gtagggaagg agatgataga aaattttagt aagatattat tagaaattgt gaataagtca      2820
     ctcacwgagg gaattatgcc aaagaaatta aaaatmgska gggttactcc aattaggaaa      2880
     attgcgaatt cagaaaaagc tgaggatcta agaccaatwa attcwttgcc wtttgttgag      2940
     aaagtgatag aagggattgt tgtgaagaga ttaaatgaat acttgwtaga aaagggaacg      3000
     attgttgacg agcagagasg gtttaggaag aggatgggwc cggaggagtt gatacaggsa      3060
     ttgatgaaga aatggaggga gagggaaaag aaggggaaaa ctacwgttgc agttttccta      3120
     gatttaaaaa gggcwtttga aactgtaaat aggkcmatgc tgatwacgaa gttaaaaawg      3180
     atagggatag cggatggkgt tttaaagtgg tttatgaact atctacagga taggagacag      3240
     aaagtggcgt ggggtgaaaa gctgtcagat gaactgtgtg tagagctggg agtaccccaa      3300
     gggagtagat tagggcctct attattctta atttatataa atgatctgaa ggaggtgatg      3360
     aaggagagtg aattgagcct ttttgctgat gatacgttag tctttagtag tgaaggagat      3420
     atagggaaag tggctgaggt aattagtaga gatctaagaa gactagggat gtggttgaaa      3480
     aaaaattggt tgattctgaa tgtacagaaa actaaatata tggtatttga agtagggcct      3540
     ggtacatggk cgggtaggat aatgatagaa aactttgaat tagaaagagt tagggtgatg      3600
     aaatatttag gggtatggat atcagaagac ctgaaaatga aagaacatat agggaaggtg      3660
     gctaaggagt atagagctaa gattagtatg ctatggaggg ttaaggattt tatagggaag      3720
     gagagtagga agttagtcta caattcacta attggagcaa aattaaatta ctgcatttct      3780
     cttcttggag aggcaagtag taaagatatc agaaatttac aaaagggaca gaattcggcc      3840
     atgagataca tactagggtg tgataaggaa aatagaataa ttgatatgct ggagacctta      3900
     ggctggctat gcatagaatt gttgataaaa gccagggttt ttatcttcat atataagatg      3960
     aggagaggac tgattgatat aagagacagg gagttattgg aaatattaga tagaagaaag      4020
     ggaaggaatt tagagttgaa atacaatgac gctagggatg tagatagtat gctattcttt      4080
     aagggaatga gagattatac tttgttcggt tgtgagaaat gggaggaact gcaattggga      4140
     gcttttagaa atagggtatg gaatgaatta atgaaattcc agagagataa ctggggggag      4200
     ggtgagcttc taccgagatg ttacaggtgg aaggagtttg gtctataggg actggtaagg      4260
     gaatggttaa atatggaata ataggttagg gattggctca aactggttca cgagcagatg      4320
     ggattagccc ttgagggcta gttaaaaaaa aaaaaaaaaa aa                         4362
//
ID   L2B-1_CP    repbase;    DNA;    INV; 4834 BP.
XX
AC   .
XX
DT   21-JUL-2009 (Rel. 14.07, Created)
DT   21-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   Culex pipiens L2B non-LTR retrotransposon.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-4834
RA   Kapitonov V.V. and Jurka J.;
RT   "L2B, a novel clade of non-LTR retrotransposons from animals.";
RL   Repbase Reports 9(7), 1412-1412 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family, together with L2B-1_HM and CR1-1_AG from the hydra
CC   and African malaria mosquito genomes, belongs to a novel L2B
CC   clade of non-LTR retrotransposons. This clade appears as a sister
CC   clade of the L2A, L2, Daphne and Crack clades. The L2B-1_CP
CC   consensus sequence was derived from multiple alignment of several
CC   copies of L2B-1_CP, which are ~98% identical to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           260..1600
FT                 /product="L2B-1_CP_1p"
FT                 /note="ORF1."
FT                 /translation="MSEEMDTGGRNEGETTVLAHPCGQCAAPIANGDEKVD
FT                 CFGKCRLSMHTRCLPRATAVGIKMLSQMPNAVFVCDACLASHKFDDGNTEK
FT                 ILQVIDAKFNNLAGVIDFVKNFDSAVKKIVREELVRANGKKTVVAEKTEES
FT                 RKIFTRSAAKAAASANKRKAEEEVEETGASFSTPKTSFAEVVRKRVKISEE
FT                 EVKKKQSKKPDPVVVIRPKEGVQVEDVRAEVQKKVNAKDLNVHRVTSSRSG
FT                 AVIVSLKDEASVAVLQANVEKQLGGRFEAQLRESFKPSIKIIGMSDEMDED
FT                 ELRDSLVEQNDVFANLKHFKLRKTFHIEKWRFNNIGVFVELDAETFFKVLD
FT                 LGKVNCGWNRCRVFDGLQVTRCFKCNGYGHKGADCRSEKQICPICSEDHKW
FT                 EECKATAEKCVNCEKLRVQRKVNVDANHSAWSSDCPVFQKEQEKRNRLVDF
FT                 TT"
FT   CDS           1649..4405
FT                 /product="L2B-1_CP_2p"
FT                 /note="ORF2."
FT                 /translation="MKSHFDELKLIIQKTTPKIIVLTETHLTEKHDLDEFQ
FT                 IQTYSCSFCLSRSAHTGGVAVYVDDRLKYETISNMAVGENWFLAVDVKSSA
FT                 LNGIYGGIYHSPSSSDTEFIDSYEEWLRSVFADERRNVFVGDFNIRWNEPG
FT                 CSRELKNVADAMGMRQIVLEPTRVGPTSSNIIDLVFTNMENAEARVVEELK
FT                 VSDHETISIAIGNDTINLPEREESYVSWKRYSKDKLQEILRRNRSNNSRID
FT                 ETIGEASRNFSTNLVSAVESLVDVRCCRRTETSDWYTDHLRAMKNERDNAY
FT                 RQYRCTKSVPALERYKLLRNAYVRGLKQAKNQSVEEEIRSCHGDSKKLWRC
FT                 LKSLIQPGGKQHAEIVFGTGCSDAETARRLNNFFVDSVEEIHAKIPPPSVV
FT                 PVAVQEEPEESLYEFQQVTMAKLKDTVRSLKDCAGVDNVTKRVMLDALDVV
FT                 GGELLDIVNRSLSQGEFPQHWKQTLVIPIPKVPKSTRPEDHRPINMLPLYE
FT                 KVIETIVKEQLTAFVDRVGVIVEEQSGFRRHHSCESALNLLLVKWKQYVEE
FT                 GKIILAVFVDLKRAFETIDRSKLKAVLHRCGIRGTALRWLSSYLSSRVQVT
FT                 RYNSATSPATDVNLGVPQGSVLGPLLFILYMNDLKQALRQAQVNLFADDTV
FT                 LFVVGDSLDECFDVMNAELAGFVDWLRWKKLQLNVSKTKSMIVTTRRLNDI
FT                 SKSVMVDGEAVERVEAIKYLGVMLDEKLNFNEHINYTIRKAARKYGVMCRI
FT                 SRYLTSEAKIHVYNSLIAPHFDYCASILFLATRTQLKRMQVLQSRVMRLIL
FT                 KCDRLTSRQLMLECLQWMSVRQRIEYNTLVFVFRIRKGMAPKYLTDTVVHG
FT                 SDIHQYNTRQADDLRLLQCKKTCTQNSLLYKGYNLFNQLPDEAKLTSNINE
FT                 FKRHCKTFVLRRPLE"
XX
SQ   Sequence 4834 BP; 1499 A; 948 C; 1284 G; 1103 T; 0 other;
     agagagtgtt atccaacgag agttgcaatt ttttaaatgc gctatcgtta gattgagttt        60
     ttaatgtgtt ctggtgcctt tcaaaggatt aaaacttttt caaagtgaag tgtaaagtgg       120
     atgcttcacg tgaacagtgc agtttaatcg tcggctggtg tccaacggtg gattttttgg       180
     cccaatcaat ttaccctcaa caccaagcta agtaccgctt tcacccttgc tttttgtttt       240
     gttttgctct cccggcgcga tgtccgagga gatggacacg ggagggagga atgagggaga       300
     aacgactgtt ctcgcacacc cgtgcggaca atgcgcagcg ccgatcgcaa acggtgacga       360
     gaaggtcgat tgttttggca agtgcagact gtctatgcac acgagatgct tgcctagggc       420
     cacggcagtg ggaataaaaa tgctcagcca aatgcccaac gctgtatttg tgtgcgatgc       480
     gtgtttggct tcacacaagt ttgacgatgg aaacacggaa aaaattctgc aagtaattga       540
     cgcaaaattt aataatttgg cgggcgtgat tgacttcgta aaaaattttg attcggctgt       600
     caaaaaaata gtgcgggaag aattagtgcg tgcaaacgga aagaaaactg tagtggcaga       660
     aaaaacggaa gaatctcgga aaatatttac gcggtcggca gcaaaagcag cagcgtcagc       720
     aaacaagagg aaggcggaag aggaagttga ggagactgga gcgagcttct caactccaaa       780
     aacaagcttt gcggaagtgg tgcggaaacg agtgaaaatc tccgaggagg aagtaaaaaa       840
     gaaacagagc aagaaaccag atcctgtcgt cgtgattagg ccgaaagaag gagtgcaggt       900
     agaagacgtt cgtgcagaag ttcagaagaa agtcaacgcc aaggatctca acgttcatcg       960
     ggtgaccagc agcaggagcg gtgcagttat cgtgtcgctc aaagatgagg catccgttgc      1020
     tgtgctgcag gcaaacgtgg aaaagcagct aggaggacga tttgaagccc agttacgtga      1080
     aagcttcaaa ccgtcgataa agatcatcgg aatgagcgac gaaatggacg aagacgagct      1140
     tagagattcg ttggtggagc agaatgacgt cttcgcgaat ctgaagcatt tcaagttacg      1200
     caagacattc cacattgaaa aatggcggtt caacaatatc ggagtcttcg tcgagctgga      1260
     cgcagaaact ttctttaagg tactggatct ggggaaagtc aactgcggat ggaatcgttg      1320
     tcgtgttttt gacgggttgc aggtgaccag gtgcttcaag tgcaatggct acggtcataa      1380
     gggcgccgac tgcagatccg aaaagcagat ctgtccaatc tgcagcgaag accacaaatg      1440
     ggaggagtgt aaagcaacag cggaaaagtg tgtaaactgc gaaaaactac gagtgcaacg      1500
     taaggtgaac gtcgacgcaa accattccgc ttggagtagt gattgcccgg tcttccagaa      1560
     ggagcaggag aaaaggaaca gattggtgga ctttacgacg tagcaaccaa aaccggacgg      1620
     agatatattg tacctgaaca ttgcgggcat gaaatctcat tttgacgaac tgaagctgat      1680
     tattcaaaag acaacgccaa aaataattgt actgacggag acacacttga cagaaaagca      1740
     cgaccttgac gagtttcaga tacaaacgta cagctgcagt ttttgtctat caaggtcagc      1800
     acacacaggt ggagttgccg tgtacgtgga tgatcgctta aaatacgaga cgatttcaaa      1860
     catggctgtt ggagaaaact ggttcttggc agtggacgtg aaaagctcag cactcaacgg      1920
     aatttacgga ggaatttatc attcacctag cagcagtgac acggagttta ttgacagcta      1980
     cgaagaatgg ctaagaagtg tgttcgcaga tgaaagaagg aatgtattcg tcggtgactt      2040
     caacattcga tggaatgaac cagggtgttc cagagagcta aagaacgttg cagatgctat      2100
     gggaatgagg cagattgttt tggaacccac gcgcgtcgga ccgacaagca gcaacatcat      2160
     tgatctcgtc ttcaccaaca tggagaatgc agaagcacgt gttgttgaag aactgaaagt      2220
     gtctgaccat gagacaatca gtatcgcgat tgggaatgac acaatcaatc ttccggagcg      2280
     agaagaatcg tatgtaagct ggaagcggta ctccaaggac aagctgcaag aaattcttcg      2340
     aagaaacagg agcaataata gcaggataga tgagacaatt ggagaagcat cgcgtaactt      2400
     cagcacaaat ctggtgtccg ctgttgaaag tttagtcgat gttcgctgct gtagacgcac      2460
     agaaacaagt gactggtaca ctgatcatct gagggctatg aaaaatgaac gagacaacgc      2520
     gtaccggcaa tataggtgta caaaatctgt tccagcgctg gagaggtaca agctgttgag      2580
     gaacgcttac gtccggggtc tgaaacaggc gaaaaatcag tcggttgagg aagaaatcag      2640
     aagctgtcat ggagattcta agaagctatg gagatgtttg aaatcgctga ttcagcccgg      2700
     aggaaagcag catgcagaaa tcgtctttgg aaccggctgc agcgatgcag aaacagcaag      2760
     gcgtctaaac aacttctttg tggacagcgt agaagagatt catgcgaaga ttccgcctcc      2820
     atcagtagtt ccagtagcag tgcaggaaga gccagaagag tcgctgtacg aattccaaca      2880
     agtcaccatg gccaaactca aggataccgt tcgatcgcta aaagactgtg ctggcgtcga      2940
     caacgtgaca aagcgtgtga tgttggatgc tctggatgtc gtaggaggag agttgttgga      3000
     tattgtgaac aggtctctga gccaaggtga attcccacaa cattggaaac aaactttggt      3060
     aattccaatt ccaaaggtgc cgaaatcaac gcgtccggaa gatcacagac caatcaacat      3120
     gttgccgctg tacgagaagg tcatagaaac gattgtgaaa gagcagctga cggcgtttgt      3180
     ggatcgagtg ggagtaatag ttgaggagca atctggtttt cggagacatc attcttgtga      3240
     gtcagctctt aacctcctac ttgtgaagtg gaagcagtac gtggaagaag gaaaaattat      3300
     cttggctgta ttcgtggact tgaagcgcgc ttttgagaca attgaccgat ccaagttgaa      3360
     ggcagttttg catcgttgcg gaatacgtgg tacagctttg aggtggttaa gcagctattt      3420
     aagcagccga gtacaagtga caaggtacaa cagcgcaaca tcgcccgcta cggatgtgaa      3480
     tcttggagta ccacagggaa gtgtactagg accgctgctg tttatcctgt acatgaacga      3540
     cctaaaacaa gcgttacggc aggcacaagt gaacttgttc gccgacgaca cagttctgtt      3600
     cgtagtggga gatagtttgg acgaatgttt tgacgtgatg aatgctgaac tagcaggatt      3660
     tgtcgattgg ctgaggtgga agaaacttca acttaacgtc agcaaaacga aaagcatgat      3720
     tgtgactaca cggcggctca atgacattag caaatcagtt atggtagatg gcgaggcagt      3780
     tgaacgggtg gaagcgatta aatatcttgg agtaatgctg gacgaaaaac ttaactttaa      3840
     cgaacacatt aactacacga tacggaaagc agctcgcaag tatggagtta tgtgcagaat      3900
     cagccgatac ctgacctcag aagcaaagat acacgtctac aactctttga ttgctcccca      3960
     ttttgactat tgtgcctcaa ttttgtttct tgcaacccgg acgcagctaa aacgaatgca      4020
     agtgcttcaa agccgagtta tgcgtctgat actgaaatgt gaccgtttga cttcaagaca      4080
     acttatgcta gagtgcctgc agtggatgtc cgttaggcag cgcatcgaat acaacacctt      4140
     agtttttgtg tttaggatta ggaaagggat ggccccaaaa tacttgacgg atacggtggt      4200
     acacggaagt gacattcatc agtacaacac aagacaagct gacgacctca gactgctgca      4260
     atgcaagaag acttgcaccc agaactccct actttataaa ggatacaacc tgtttaatca      4320
     actccccgac gaagctaagc tcaccagcaa catcaacgag ttcaagaggc actgcaagac      4380
     tttcgtttta cgaagaccac tggagtaggt acccacgatt gtactgtgag gaagagcatg      4440
     ttatgacggc cggccatctt cattatcggt acaaatcgca tgggatttac cttgggccgc      4500
     atatgaaaaa gtttgatcaa aagtaacgcg aatctgggcg cggttttaac cctatgtgct      4560
     catatgtgtg tgagatagca aatgatctca aatccctaaa taggagaaaa ggaagcagca      4620
     gcgagtgaca taaaagactc aacaaaggat ttgtatgagc gccttgaggt gatgtaatga      4680
     gagaaacgga tgggcataca cggaagtcga gtaagattta aggatactct caagcactgg      4740
     aatagaatta tcgaaagata tctgctcgta aaccttccat actacaaata atgtgtatgg      4800
     gcaagaggtg ggccatccaa ggaaaaaaaa aaaa                                  4834
//
ID   L2B-1_CQ    repbase;    DNA;    INV; 4835 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4835
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 142-142 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1607
FT                 /product="L2B-1_CQ_1p"
FT                 /translation="METGEGKGGGTNHPCAQCSQPISETDHCVECFGKCRL
FT                 SIHVGCVPRATAESIELLGQLPNAVFVCDACYALHDYGDDGHTEKILSDVV
FT                 AKLDELSCMIDFVKNFDSAVRNVVREEIARDRKTSTASGNKDGTRNRVITR
FT                 SESKKRKAEEAEDSESKKMRAEEVGDTVTEFVTPKASFAKVVQQRIVLSEE
FT                 EQKQKQTQKPDPVVVIKPKEGVEVENARMEVQKKVSSKNLNVQRVYTNKNG
FT                 EVVVALKDEASVQVLQENVKKQLGERYDVRLRDSLKPTVKIIGMPEELEED
FT                 ELRETLIDHNDSFANLKHFKLCRSYRNEKWSYDNNNAVVELDADTYFKVLD
FT                 AGKVNCGWKRCRVFDGLQVLRCFKCNGFNHKGADCKAAVVTCPICSGPHEL
FT                 KDCKAEREKCSNCEKLRSEKNADVDVNHAAWSSECPVYRKQQQRRNKLVDF
FT                 TL"
FT   CDS           1641..4412
FT                 /product="L2B-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNIAGMRTHFDELKVIIQQNKPKLVILTETHLTSQHD
FT                 LDEYEIQNYRRSVCLSRSAHTGGVLIYVDDRVDFETISDFVAGDNWFLAID
FT                 VKSPTLNGIYGGVYHSPSSSDTSFIGSLETWLRSVFVEDRTNIFAGDFNIR
FT                 WNEPGYSRELRNVTEALGMKQLVSEPTRVGPSSSTMIDLVFTNMVGGDARV
FT                 VEELKISDHETIGINPGKSSVHLSERSKTRISWRRYSKEKLQEILLSNRSR
FT                 ADPMASVNEAGEKFDAEIVAAVGSLVDVRFDERSDPHDWYGDQLSTLKTLR
FT                 DDAYRKFKSTKLVSDWDRYKRCRNRYVNQIRTSKNSSINNEIRSCGGDSKK
FT                 LWRCLKSLIQPGGQPPTEIVFGGPRGDAETATLLNEFFVQSVEEIHGKIPP
FT                 TAFTPPTTGGTEHKELLSNFEPITMNKLKETVRSLKNCAGVEHVTKRVMMD
FT                 ALDVVAVELLDIVNKSLSRGEFPDAWKRTLVIPIPKIPKSKNPEDHRPINM
FT                 LPLYEKVMEIIVKEQLLAFIDRTGVLLKEQSGFRKNHSCESALNLLLLKWK
FT                 QCIEEGRVVLSVFVDLKRAFETIDRTKLIGVLKKSGIRGTVLKWFSSYLEN
FT                 RTQVTRYNSAVSSETAVKLGVPQGSVLGPLLFILYINDIKQALRRVQVNLF
FT                 ADDTVLFVIGDSFDECFDIMNEELVGFTEWLKWKKLQLNIAKTKCMVVTTR
FT                 KTNDCRRCVQMDGGVVERVETMKYLGVMLDEKLNFNEHIDYTIRKAARKFG
FT                 VLCRINRYLTAETKVQVYNSLIAPHFDYCSSILFLGTQRQLKRMQVLQSKI
FT                 MRLILKCDRLTPRRSMLECLQWMSVKQRIEYNTLVFVYRMKKRMAPQYLTE
FT                 AMVCGRDIHEHDTRGADDLRLQNWKKACTQNSLFYKGFKLYNQLPENAKAT
FT                 SNINEFKRNCKEFVRTRPLE"
XX
SQ   Sequence 4835 BP; 1458 A; 937 C; 1350 G; 1089 T; 1 other;
     actgagtgta gtcaattgaa ttgttgcatc tttttaatga ccagcaataa agtgtcgttt        60
     taattgtgtt accgttcgaa gtgaaggcca caaagtttag tacttgacgg aaaagcagct       120
     ctgtgcaagt kggcgttgga gttcaagcgt tggatgctga gtagccaagg attttcgacg       180
     ggacaaaatc agtcaaaacc cgaagctaag tatcgctccc catttgttct gtgcttgttt       240
     atctcgccgg cacaatagcc gcggtgatgg agacgggcga agggaagggt ggagggacga       300
     accatccgtg cgcgcagtgc tctcagccta tttctgagac agaccattgt gttgagtgtt       360
     ttggcaaatg cagattgtcg atacacgtcg gttgcgtgcc ccgcgcgacg gcagaaagta       420
     ttgagttgct tggtcagttg cctaacgctg tatttgtgtg tgatgcgtgt tatgccttgc       480
     acgattacgg ggacgatggg cacacggaaa aaattctgtc tgatgttgtc gcgaaacttg       540
     atgagttgtc atgcatgatt gattttgtga aaaacttcga ttcggctgtc agaaacgttg       600
     tgcgcgagga aatagcgaga gacaggaaga cttcaacagc gagtggaaat aaggatggaa       660
     cccgaaatcg tgtgattacg cggtcggaat ctaagaaaag gaaagcagaa gaggcagagg       720
     acagcgagtc aaagaaaatg agagcagaag aagttggaga cacggtgact gagttcgtta       780
     ctccaaaggc gagctttgca aaggtggtac agcaaagaat tgtgttatcg gaagaggagc       840
     aaaaacagaa acaaacccag aagccggacc cagtcgtggt tatcaagcca aaggaaggag       900
     ttgaggttga gaacgcccga atggaagtac agaaaaaggt cagctctaaa aacttgaacg       960
     ttcagcgggt gtataccaac aaaaatggtg aagttgtagt agcactgaag gatgaagctt      1020
     cagttcaggt acttcaggag aacgtgaaga agcagcttgg agagcggtac gacgtacggc      1080
     ttcgggattc cctgaaacca actgtcaaga tcatcggcat gccagaggag ttggaggagg      1140
     acgaactacg ggagacgttg atcgatcaca acgattcgtt tgccaacctg aagcacttta      1200
     aactgtgcag aagttatcgc aacgaaaagt ggagctacga caacaacaac gctgtagttg      1260
     agttggacgc agacacttac ttcaaagtat tggacgcagg gaaggtgaat tgcggctgga      1320
     agcgttgccg tgtcttcgat ggactacagg tgctgagatg cttcaagtgc aacggtttca      1380
     accacaaagg agctgactgt aaagctgctg ttgttacctg tccgatctgc agtggaccgc      1440
     acgaattgaa ggactgcaag gcggagcgtg aaaaatgttc aaactgtgag aaactaagga      1500
     gtgaaaagaa tgctgacgtc gacgtgaacc atgccgcgtg gagcagtgag tgtccggtgt      1560
     acaggaaaca gcaacaacgg cggaataagc tggttgattt tactctgtag caaccaaaac      1620
     ccgtcggaga tgtcttgtac atgaacatag cagggatgag gacacatttt gacgagctaa      1680
     aggtgataat tcagcaaaac aagccaaaac tggtgatttt gacagaaaca cacttgactt      1740
     cacaacatga tcttgacgag tacgagattc agaactatag gagaagcgtg tgtttgtcca      1800
     ggtcagccca cacgggaggg gttctaatat acgtggatga tcgtgttgac ttcgagacaa      1860
     tttccgactt tgtagctggt gacaattggt tcctggcaat tgacgtcaaa agcccaactc      1920
     tgaatggaat ctacggagga gtatatcact caccgagcag cagtgacact agttttatcg      1980
     gaagtctgga aacgtggctc aggagcgtct ttgtagaaga taggacgaac attttcgctg      2040
     gggatttcaa cataagatgg aacgagcccg gttactcgcg tgagctgaga aacgttacgg      2100
     aggctttggg gatgaagcag ttagtgtctg aacctacccg tgttggtcct agcagcagca      2160
     caatgataga tctcgtgttt acaaatatgg tgggtggaga tgcacgtgtt gtagaggagc      2220
     tgaagatttc cgatcatgaa acaattggaa tcaaccccgg gaaaagcagc gtgcatcttt      2280
     ccgaacgcag caagacccgg attagttgga ggcggtactc taaggagaaa ctgcaggaga      2340
     ttctcctttc gaaccgaagt cgagcggatc caatggcgtc agtaaacgaa gccggagaga      2400
     aatttgacgc agaaattgtg gcggccgttg gaagtctcgt cgatgtccgc ttcgatgagc      2460
     gttcagaccc acatgactgg tacggggatc agctttcaac actcaaaact ttgagagacg      2520
     atgcctaccg gaagtttaag agcaccaagt tggtaagtga ctgggatagg tacaagcgtt      2580
     gcagaaaccg ttacgtgaac caaatccgga catcaaagaa ctcgtcaatc aacaacgaaa      2640
     taaggagctg cggcggcgat tcaaagaagc tgtggaggtg tttaaaatcg cttatccagc      2700
     ctggaggaca gccgccaact gagatagtgt ttggaggacc acgaggagat gctgagacgg      2760
     cgacgcttct gaacgagttc tttgtacaga gtgtggagga gatacatgga aagattccac      2820
     caacggcatt tacgccgccg acgacaggag ggacggaaca caaggagttg ttgagtaact      2880
     ttgaaccgat cacaatgaac aaactgaagg aaacggtacg gtcactcaag aattgtgctg      2940
     gagttgaaca tgtcacgaaa cgggtcatga tggatgcttt ggacgtggtt gcagttgagt      3000
     tgctggatat cgtaaacaag tcgctgtctc gaggtgaatt cccagacgca tggaagagga      3060
     ccttggtgat tcccatccca aaaattccta aatcgaagaa tccggaggac cacagaccca      3120
     tcaacatgtt gccgctgtac gagaaggtca tggagataat cgtgaaggaa caactgttag      3180
     cgttcattga ccgtactggt gtgctgctga aggaacaatc tggttttcgg aaaaatcact      3240
     cttgtgaatc ggcgctgaac ctgttgctgt tgaagtggaa gcagtgtatt gaagaaggaa      3300
     gagttgttct atcagtcttc gtggatctga agcgggcctt cgaaaccatt gaccggacga      3360
     aactaatagg tgttctcaag aaaagtggaa tacggggcac ggtactaaaa tggttcagca      3420
     gttacctgga gaaccggacg caagtgacaa ggtacaatag cgcggtgtca tcagaaacag      3480
     cagtcaagct cggagtaccg caaggaagcg tgctaggccc actactgttc atactgtaca      3540
     taaacgacat taaacaggca ctgaggagag tacaggtgaa cctgttcgcc gatgacacag      3600
     ttttgtttgt gattggtgac agcttcgacg agtgctttga catcatgaac gaagagctag      3660
     taggattcac ggaatggttg aaatggaaga agctgcagtt gaacatcgcg aagacgaagt      3720
     gcatggtagt gacgacacgg aaaaccaacg actgcagacg gtgtgtacag atggatggag      3780
     gagttgtgga gcgggttgag acgatgaagt acctcggagt catgttggac gaaaagttga      3840
     atttcaacga acatattgac tatactattc ggaaggcagc acggaagttt ggtgttctgt      3900
     gtaggatcaa tcgctacttg acggcagaga cgaaagttca ggtgtacaat tcgctcatcg      3960
     ctcctcactt tgactattgt tcatcgatct tgtttctggg aacacaacga caactgaaaa      4020
     ggatgcaggt actacaaagc aaaataatgc ggctgatact aaagtgtgat cgactgacgc      4080
     ctcgacggag catgctcgaa tgtttgcaat ggatgtcggt aaagcaaaga atcgagtaca      4140
     atacccttgt gtttgtttat cgtatgaaaa aaaggatggc gccacaatac ttgacggaag      4200
     ccatggtatg cggaagagat atccatgagc atgacactag aggagctgac gatctcagat      4260
     tgcagaactg gaaaaaggca tgcacgcaga actcgctgtt ttacaaagga tttaaacttt      4320
     acaaccagct tccagagaat gcaaaggcga caagcaacat caacgagttt aaaagaaact      4380
     gcaaggagtt cgtacggaca cggccgttgg agtagaagtg acccacgatg gtactgtgag      4440
     gaagagcacg ttatgacggt cggccatctt cattatcggt acgcattcgc atgggatcac      4500
     tttgggccgc atatgataaa cctgatcaaa agtaacgcga atctgggcgc ggtttaaccc      4560
     tatgcgctca tatgcgagtg gaatagcaaa tggttccaat accctaaatt tgatgcaatc      4620
     tgagtgatga aagactctac ataggatttg taagagcgcc ttgagacgag ataagagaga      4680
     tatggatggg catacacgga agtggagtaa gattacagga cactctctaa acatgaacga      4740
     agaattatcg aaagatatct gctcgtaaat cttccatact acaaaaactg tgtatgggta      4800
     tgaggtgggc catccaagga aaaaaaaaaa aaaaa                                 4835
//
ID   L2B-1_LMi   repbase;    DNA;    INV; 3871 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.11, Created)
DT   13-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3871
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3159-3159 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(915..1526,1457..1924,1902..2039,2486..2779,
FT                 2779..3708)
FT                 /product="L2B-1_LMi_1p"
FT                 /translation="NCVINVQGFLCHKDEVEEFARQNSPWLLCLHETHVTQ
FT                 DVEDIELEIDGYNIVRCNTESSHTGGVLIYIKKQHRYKIEFHNVKSMEYWA
FT                 VGITTAIKKEKYYIGCIYRSPSGSCSRFLDFFEEWLEMLIDSGKNIVVTGD
FT                 FNINWFSDAESCRIRKIVQMFGLKQVVKEATRISTRYCQYTDTIQTSSTLI
FT                 DLVMTNNYTLKLVFYHTDIKYINRSSNDKQLYTEASVLTTPRISDHFIVLI
FT                 HLHDLSRAEQRMKILDTGSFSINIEHVSFPXCDPSNSLTSTYQQLVEELEN
FT                 AVELSTKEYVNHANAKPWFNKNVQNAVKQRDLSYKRYSYLRSVCPNNKVIL
FT                 EEWNKYKTLKKQLSICHKNNCLYVIRREKKEYYSKTIDNCRQNPTKMWTTL
FT                 KKVISKTKIVTIQQHINNCPVWIRAGHSTETALQCIISKWKEQMDLGQSVV
FT                 AVFLDLKRAFETIDRLQLLRKLEAYGIRGVVLKWFESYLTGRKQCVKCDQV
FT                 VSKIIPNDLGVPQGSVLGPLLFILYINEIPKVLKDCEIHLFADDTLLYASG
FT                 TNIDCLIDNLNSNLASVNHWLNGNKLKLNTKKTKCMLLTLKSEVGDLNSDI
FT                 VIDGEKIEWVSSYKYLGVIVDSKLKLDEHINYITKKIGKKIGFLSRIRKML
FT                 TEKSRMTVYNTIIMPHFSYAGSILYLCNMTLVSRLQILQNRCMRLILNCDM
FT                 YTRIEYMLVTLNWLSVKQFITLQAMIFIHKIKLGMCPDYLGNKLTLVKEVH
FT                 KYNTRSSNNYYLECKNKKIGQNCIFFKGISQYNSLPKELKDCHSLALFKKR
FT                 LKKYIGLQQRNL"
XX
SQ   Sequence 3871 BP; 1547 A; 595 C; 740 G; 988 T; 1 other;
     ttctacacag actgtactcc tgcaaaaaca aaatgaagat ctaaaattat atatagaaat        60
     ggtggatgaa ctaaaacaag aagtgaagaa aatgaaagaa gaaagtacca aaaaaacgta       120
     tgcacaaata actaacaaca aacaagaaga agttgtttta atccagccaa aaacaaatca       180
     aagtagtgaa accacaagag aaatttgtaa ggcaaattta aaaccagtag aactgaaggt       240
     tggggttact ggaatacgaa acttgcagaa aggagggaag ccataaatgt tcacagcaat       300
     gaagtaaaaa aaaagataag aaagcttggg acaagattat aatatcagag ttccatcgct       360
     ttatcaaccc tgcatcaaaa tagtaggcat gaaagaaaaa atagaagatg aatttgtctt       420
     cattgcctaa aaaaccaaaa caaggactct attggagaaa attcagtagt aaaagtcttg       480
     aaaaatagaa aaattagaga aggaaagtaa taacaattgt ggaaatggat ccagagtctt       540
     tcaggaaaat catagaagtg gggaaagtaa atattgaatg gcaacgatac aaagtctatg       600
     aacacttgaa tattgttgat gttttaaatg caaggggttc aatcactatg cagaccgttg       660
     taatgatgac agcccctgtt taaagtgtgc tagttcttct caccaggcag ataaatgtac       720
     agaagacaca ttgaagtgtt caaattgcat taaagtaaat gtaagactag aatgaacctg       780
     gacacaaacc ataatgtgat ggacaataca tgcccagttt acagaaggca agtagagaac       840
     tacaaaacaa aaatacagta ttccaaatag caactaaaga atggtaaaag caacaaaata       900
     catgaaaaag gtgaaattgt gtcattaatg tacagggctt tctatgtcac aaggatgaag       960
     tagaagaatt tgcaagacaa aattctccat ggttgctctg cctccatgaa actcatgtta      1020
     cacaagatgt tgaagacata gaactcgaaa tagatggcta taatatagtt cgttgtaaca      1080
     cagaatccag tcacacagga ggagtactta tctacataaa aaaacaacat aggtacaaga      1140
     ttgaattcca caatgtgaaa tccatggaat actgggctgt aggaattaca actgctatta      1200
     aaaaggagaa atactatatt ggctgcatct atcgttcacc aagtggaagc tgctcaagat      1260
     ttctagattt ctttgaagag tggctggaaa tgctaattga cagtgggaaa aacatagttg      1320
     tgacaggaga ttttaatata aattggttca gtgatgcaga atcatgtaga ataagaaaaa      1380
     tagttcagat gtttggacta aaacaagttg taaaagaagc aactagaata agcacaagat      1440
     attgccagta tactgatacc atacagacat caagtacatt aatagatcta gtaatgacaa      1500
     acaactatac actgaagcta gtgttctgac tacccctaga attagtgacc acttcatagt      1560
     gctgatccac ttgcatgatt tgagcagagc agaacaaaga atgaagatac ttgacactgg      1620
     aagcttttca ataaacatag agcatgtatc ttttcccttw tgtgatccat ccaatagttt      1680
     gacctcaact taccaacaat tagtagaaga gctggagaat gctgtggaat tatccacaaa      1740
     ggaatatgta aatcatgcaa atgctaagcc ttggtttaat aaaaatgtcc agaatgccgt      1800
     gaagcaaagg gacctctcat ataagaggta ctcatatctc cgaagtgtat gtcctaacaa      1860
     taaggttatc ctagaagagt ggaacaagta caaaacgtta aaaaaacaac tgtctatatg      1920
     tcattagaag agaaaaaaag gaatactaca gtaagactat agataactgc agacaaaacc      1980
     caaccaaaat gtggaccaca ctaaagaaag taatatcaaa aacaaaaata gtaacaatat      2040
     agggaactaa aagtgaatga cagtgtttat acaaacaaga ctgacattgt gaacaactaa      2100
     atgaattcta tatagacagt ataatagtgg actcatacct tgcacaggaa tataaacttc      2160
     ctgctcagaa tgaaattcat ttttaggaaa atatctttga agaactggaa ttgtaatgat      2220
     atgaacagta aaacagccac aggtgtaaaa tctctataca atatgaaatt gattggtcac      2280
     acataagaga aagagtacat aatataatgt gagacacttg agacaggtga agtacctgag      2340
     ccacttaaag tctctacaat aaaacctata ccgaaatgaa ggactccaac aaagcagaag      2400
     atatgaggcc aataaacttg ctgcctggta ttgaaaaggt actagagaag gtagtacaca      2460
     agcaactact gaagttccta aataacaaca acatattaac aactgtccag tctggattcg      2520
     agccgggcat tcaacagaaa ctgctctaca atgtatcatt tctaaatgga aggagcagat      2580
     ggatcttgga caaagtgtag tggcagtttt cctggacctg aagagagcct tcgagactat      2640
     cgacagactg caactacttc ggaaactgga agcctacggt atacgtggtg ttgtgttaaa      2700
     atggtttgaa agctacttga cggggaggaa gcagtgtgtg aaatgtgatc aggttgtgtc      2760
     caaaataata ccaaatgact aggtgtgcca cagggcagtg ttcttggccc attactgttt      2820
     atactttaca ttaatgaaat cccaaaagtg ctaaaggatt gtgagataca cctatttgca      2880
     gatgacacac ttctgtatgc ttcaggtaca aacattgatt gccttataga caatttgaac      2940
     agcaatctag ccagtgtcaa tcattggcta aatggaaata aattaaagct taacacaaag      3000
     aagacaaagt gcatgcttct tacactaaaa tcagaggtag gtgatctgaa cagtgacata      3060
     gttattgatg gtgaaaaaat tgaatgggtt agctcttata aatacttggg agtgattgta      3120
     gatagtaagt taaaactgga tgagcatata aattatataa ccaagaagat aggtaagaaa      3180
     ataggattcc ttagtaggat taggaaaatg ttaacagaaa aaagcagaat gacagtgtac      3240
     aacaccatca taatgcctca cttttcatat gctggatcaa tactgtacct gtgtaacatg      3300
     acattagtga gtaggctaca gatattacaa aacagatgca tgagattaat actgaattgt      3360
     gatatgtaca ctagaataga atatatgttg gtaacattaa attggttgtc tgtcaaacag      3420
     ttcatcacac tacaagcaat gatttttatt cataagatta aattaggaat gtgtccagac      3480
     tatttaggca ataaactaac tttagtgaaa gaggtccata aatataatac aagaagtagc      3540
     aacaactact acttggagtg taaaaataaa aaaattggtc aaaactgcat atttttcaaa      3600
     ggtattagcc agtacaacag tttaccaaaa gaactaaaag actgtcactc attggcttta      3660
     ttcaaaaaaa ggctgaagaa atatataggt ctacagcaga gaaacctgtg atatataatg      3720
     tgtaaattta taataccgta tgtgtttaaa tataatgtat aaacctgtaa tgctgaaaca      3780
     cacaatagta aatcaatgta gttgtatttc aataagtgta tgtaaaacat cagcctgagt      3840
     gctgaaacaa accaaactaa ataaataaat a                                     3871
//
ID   L2B-1_PBa   repbase;    DNA;    INV; 3896 BP.
XX
AC   .
XX
DT   09-JUN-2013 (Rel. 19.03, Created)
DT   09-JUN-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3896
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 748-748 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           327..917
FT                 /product="L2B-1_PBa_1p"
FT                 /translation="MQAKLGDDYKIVESHQKPKIKIVNIDEDEMKLDDDEL
FT                 IATIIKQNKMDAIKMRIVKRIVKEKKNNNNKARGRGNEGSVIMETDEKTHE
FT                 LVLKKTKLNIGWKKCPVFNHVSVKRCFKCWGYYHIAKNCTRDETCHKCAGN
FT                 HNSMDCTATKKKCVNCMFHIRTYNLKINDEHDALSTECPTFKRAIQEEKRR
FT                 AGWEDAK"
FT   CDS           972..3770
FT                 /product="L2B-1_PBa_2p"
FT                 /translation="MAHRDEIQHQVLKKLNPAFLALSETRLTEEIEDSEVN
FT                 VPGYNIIRCNAENRNTGGVVLYIRDDMKYEIVLARKLESNCWCVAVEVKEK
FT                 MYKGIIMVIYHSPSASHGEFLRFLEDTVEELIIKGECMVIGDFNIDLMIDS
FT                 FYAKKLQTTMLNLGMKQYVNKPTRIAKDSQTVIDLIFANNNEIAVQVIHEP
FT                 KITDHAWLKVELSASKVENKYREFSARNYKEFDVNEFTRLVEGKVQKNQDM
FT                 DVSERAKKLVDSIVDALDVTAPKKKFRIPKVWDGKKWYSDEIREAADRRDK
FT                 AYRKALYDDTEQNWSQFKIERNAVVKLIREKKKEYYENMIDLNKENPTTMW
FT                 KTLKEIIRGESIGVKEVENIDFEILGDTEECELADKFNLYYIQSINSIVES
FT                 ININRPGDTSKKIIYVIEDKGIMENFETIRLEQLQKVVMELPKKKGTEEGI
FT                 TSDILKAAFYVIKEEFVDIINNSLRVGCFPEGWKTSTIIPIPKIEKAKKAS
FT                 EYRPINMLPIFEKVLELVVKDQLEMYLENNGIITEHQSGFRKHYSCETAIQ
FT                 TVIDDWKLIVSERKMVGVIFMDLKRAFETIDRKRLLEKMFQYGIRGKVFEW
FT                 FKSYLNNRKQRVRFNHKWSKLLTTEYGVPQGSVLGPLLFIIYINDIIKVCP
FT                 EGCNIKMFADDTLIYISGESSADLEIKMNTVFNVVETWMNINKLKMNAGKT
FT                 KYMIVRGIRKEVKGNIVLNCLDGTIIERVEVIKYLGIIIDDRFKFDNHCDY
FT                 MLKKIGKKTSFLNRIGNSISMYTRCMIYKTIIAPHFEYCATLLIAMGETHL
FT                 CNLQKAQNRAMRVILQCNRYTKVRDMLQALQFMSIKQRLHYNVCIFVFKIL
FT                 NNLLPEQLRDKCRVVGSEGRTSTRQADNIEIQFRRTASAQKSMFYEGLRLY
FT                 NALPADVRQCTGLINFKRKLKNYVVNGIE"
XX
SQ   Sequence 3896 BP; 1589 A; 392 C; 886 G; 1028 T; 1 other;
     ttacaaagaa gtagttcgag aagaattggg aaatgttaaa caagagctgg aagatttgag        60
     gagaatgatt caaggagtag caggtggatc aacgggtgga atgcaaagaa gctacagtga       120
     agcgactaaa gagaagaaga aagaaaacat tataattgtt aagccgaaga tgcaacaaga       180
     gagtgaagct acaaaaaaat cgataaaaga taaagtggat attaagagta tggcaatggg       240
     aataacgaaa ttaaaaaaag gaagcaaagg aacagtaatt atgggttgta gaaaccggtg       300
     aagaagtgga aaaattgaag gaaacgatgc aagccaaact aggtgatgat tacaaaatag       360
     tggagtcaca tcagaaaccg aaaataaaaa ttgttaatat agatgaagat gagatgaagt       420
     tagacgatga tgagcttata gctacaataa taaaacagaa taaaatggat gcgataaaaa       480
     tgcgaatagt gaagagaata gttaaagaga agaaaaataa taataataaa gcgagaggaa       540
     gaggaaacga aggatcagta ataatggaaa cggatgaaaa aacgcatgag ctggtgttga       600
     aaaaaacgaa gttaaatata ggatggaaga aatgtcctgt gtttaatcac gttagtgtta       660
     aaagatgttt caaatgttgg ggatactatc atattgcaaa aaattgtaca agagacgaaa       720
     catgtcataa atgtgcagga aatcataatt cgatggactg tacggcgaca aagaagaaat       780
     gtgtaaattg tatgtttcat attcggacat acaatctgaa gataaatgac gaacatgatg       840
     cccttagtac ggaatgtccg acttttaaga gagcgataca ggaggagaag aggagagctg       900
     gctgggagga cgctaaatag caactacgga aggaagcgga gctaatacta tatacgaatg       960
     cgcaaagttt aatggcgcat agagatgaga tacagcatca ggttttgaag aaattaaatc      1020
     ctgcgttctt ggcactatcc gaaaccagat tgactgaaga aatcgaagac agtgaagtga      1080
     atgtgccggg ttataatata attagatgta atgctgagaa tagaaataca ggaggggtag      1140
     ttctatatat aagagacgat atgaaatatg aaatagtatt agcgagaaaa ttagaatcga      1200
     actgttggtg tgttgcggta gaagttaaag aaaaaatgta taaaggaata ataatggtaa      1260
     tatatcactc accgagcgca tcgcatggag aatttttgag atttttagag gacacagtag      1320
     aggagttaat aataaaagga gaatgcatgg taataggaga ctttaatata gatcttatga      1380
     tagattcgtt ctatgcgaag aagctgcaaa cgacaatgtt aaatttaggt atgaaacaat      1440
     acgttaacaa accgacgaga attgcgaaag atagtcagac agttatagat ttaattttcg      1500
     ctaataataa tgaaatagca gtacaggtaa ttcatgaacc taaaattacg gaccacgcgt      1560
     ggctaaaagt tgagttgagt gcgagtaaag ttgaaaataa atatagggaa tttagtgcta      1620
     ggaattataa agagttcgat gtaaatgaat ttaccagatt agtggaaggt aaggtacaaa      1680
     aaaatcaaga tatggatgtt agtgagagag cgaaaaaact tgtcgatagt atagtagatg      1740
     cgttagacgt aacggcgccg aagaaaaaat ttagaattcc gaaagtatgg gatgggaaaa      1800
     agtggtattc tgatgaaata agagaagcag cggatagaag ggataaggca tataggaaag      1860
     cattgtatga tgatacggaa caaaattggt cgcagtttaa aattgaaaga aatgcagtag      1920
     taaaattaat tagggaaaag aagaaagagt attatgaaaa tatgatagat cttaataaag      1980
     aaaatcccac gactatgtgg aaaaccttaa aagaaataat tagaggcgag tcaataggcg      2040
     tgaaggaagt agaaaatata gactttgaga ttttaggtga cactgaggag tgcgagttag      2100
     cggataaatt taatttatat tatatacaaa gtatcaatag tatagtagaa tctataaata      2160
     taaataggcc cggcgacaca agtaagaaaa ttatttatgt tatcgaagat aaaggaatta      2220
     tggaaaattt tgaaacaatc aggttagagc agttacagaa agttgttatg gaattgccaa      2280
     aaaagaaagg tacggaagag gggataacta gcgatatatt gaaagcagcc ttttacgtaa      2340
     taaaagaaga atttgtggat ataattaaca attctttgag agtaggatgc tttccggaag      2400
     gttggaaaac ttctacgata ataccgatac caaagataga aaaagccaaa aaagcaagcg      2460
     agtacagacc tatcaatatg ttaccaatat ttgagaaagt gttagaatta gtagtaaaag      2520
     atcaacttga aatgtatttg gaaaataatg gcattataac agaacatcaa tcgggattta      2580
     gaaaacatta ttcatgcgaa actgcgattc aaactgtcat cgatgattgg aaattaatag      2640
     tgagcgaaag gaaaatggtg ggagtaattt tcatggatct taagagagcg tttgagacaa      2700
     tagacagaaa aagattatta gaaaaaatgt ttcaatatgg aattagagga aaggtatttg      2760
     aatggtttaa atcatactta aataatagaa aacaacgggt acgatttaat cataaatggt      2820
     ctaaacttct gacaacagaa tatggagtgc cacaaggatc cgtgctagga cctctattat      2880
     ttataatata cataaatgat ataatcaaag tttgtccaga ggggtgcaat ataaaaatgt      2940
     ttgcagatga cacgcttata tatataagtg gagaaagtag cgcggattta gaaataaaga      3000
     tgaacacagt attcaatgta gttgaaacat ggatgaatat aaataagcta aaaatgaatg      3060
     caggaaaaac gaaatatatg atagttagag gtataagaaa ggaagtgaaa ggtaatattg      3120
     tattgaattg cttggatgga actataatag agcgtgtgga agtaataaaa tatttgggta      3180
     taattataga tgatagattt aaatttgata atcattgtga ctatatgtta aaaaagatag      3240
     ggaagaaaac aagcttcttg aacagaatag gtaactcgat atcgatgtat actagatgta      3300
     tgatatataa gacaattata gcgccgcact ttgagtattg tgctacatta ttgatagcaa      3360
     tgggagaaac tcatttatgt aatttacaaa aagcacagaa tcgggctatg agagttattt      3420
     tacaatgtaa taggtatact aaagtaaggg atatgttgca ggcgttacaa tttatgtcga      3480
     taaaacagag attacactat aatgtatgca tatttgtttt taaaattctg aataacttat      3540
     taccggaaca gttaagagat aagtgtaggg tagtaggaag tgaaggaaga acgtcaacac      3600
     gacaagcaga caatattgaa attcaattta gaagaacagc tagtgcacaa aagagcatgt      3660
     tttatgaggg attaagattg tataatgcat taccagcaga tgtaaggcaa tgtacaggat      3720
     tgataaattt taaacgaaag ctaaagaatt atgtggtaaa tggaatagaa tagttacttn      3780
     ttttcgttgt tgttttgttt ggcgttaatt ttaatttcaa ttttaattat attatattat      3840
     tatatattat atgttgtatt agttattagc attagtatta tgttgtatta gtatta          3896
//
ID   L2B-2_AAe   repbase;    DNA;    INV; 4631 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4631
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1406-1406 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
CC   Closely related to CR1-1_AG and L2B-1_CP.
XX
FH   Key           Location/Qualifiers
FT   CDS           296..1705
FT                 /product="L2B-2_AAe_1p"
FT                 /translation="MSVQCHVCAKGINTANDRVFCFGGCGQVLHTKCADLT
FT                 NAEATALRGNVSIKYMCHDCRKKQVCLNTMMSKWEEIVTAINEIKIRLQKI
FT                 ESNCERMNVAEMISKSEQNIKTIIEQSISAQMSRCRSLGDQCLVVEKDLQN
FT                 IDVFVVGEGSAVSDENSSSSYAAVAKSNKXTSVSDSVLRSGRIRNKSSVTT
FT                 PTTFGNGRKLNNRXIDANEVIMVNDNSGKSSKKTLECTVRIKPTVQQSNQQ
FT                 TKKEVREKINPSQMGIKSVRNGVNGAIVVECGTKNEAEGLVNKLRDELGEN
FT                 YATKIEQPKRPRIKILGVEDEYESDDLKDILNSQNDICNIEYLRILKTIKH
FT                 RRGVYTEFTLICETDPGTFEQIMRKGKLYIDLSSCRVTESIDILRCYKCCG
FT                 YAHKSQECKNQLHCARCAEGHDIKECSSEQLKCINCVVSNKERKTKLDVNH
FT                 SARSFNCPIYLNKIKFSRRFIDYEK"
FT   CDS           1709..4510
FT                 /product="L2B-2_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSKSRADIIFLNISGITAHFDELKLLVDNKKPKLVML
FT                 TETHLTVDINITEYSIRNYKICCCFSCSRHTGGVMMYIHNSIKYQEISNVM
FT                 VGQNWLVAINVAKGLRTGVFGLLYHSPNGSDKEFLEYLEHDWFENVLNDSQ
FT                 MNLIAGDFNINWRNPNDSGSLRNVTQCFNLSQKVHEVTRRTRLSETIIDLV
FT                 FCNEETIRVSVEDESKISDHETLRIDLFDNSEPVDDFLTIKCWKKYTKDAL
FT                 LTILREKYQNESPRLLDEKADILGTILKESVNKLVVIKTIKCRSRKKWYSL
FT                 ELKNLQVLRDEAYKKASTSWDEADWQHYKVLRNEYSHSIRNAKAEYTQRKI
FT                 TQSKHNSKQLWKTLKALWKNRENPASCVSFNGNSSDNDQEISEKFNSYFID
FT                 SVQVINNSIEDVPDICSDRNPQLLERWSVFRRISMETLKNAIYRIGSSSGM
FT                 DNVNLQVLKDSFEVTGEYLLDIINESLETGHCPNVWKQSMVVPIPKVSGTT
FT                 KAEEFRPIDMLPIYEKVLEIIVKDQLLEYLSDQNILIDEQSGFRQKHSCET
FT                 ALNLLLYKWKRMIEEKKTIVVLFLDLKRAFETISRPILLKTLRDYGIAGKV
FT                 LDWFESYLTNRTQRCQYNGTTSTPKAVPLGVPQGSVLGPLLFIMYINDMKK
FT                 GIKYCDINLFADDTVLFIGEKDPSTAIWKIREDIETLAKWLKFKKLKLNVQ
FT                 KTKFMIITNRKQINIEEFKLEIDGAEIERVEVFKYLGIYIDQKLTFKVHIE
FT                 SLVKKVARKYGMLVRLKSQLTFWSKIFLYKTLVAPHIDYCSSVLYLASDIH
FT                 LKRLQKLQNKFMRFILCCNKYTPVRTMLETLQWQSIKQRIIFNVLVLIYKL
FT                 TNNLLPDYLCNIVVRGRNLHQYRTRHIDDLRVVPFTMTTNQKSIYYSGIRT
FT                 FNQLPLDVRNVRTVNEFKRKCSVWIKISID"
XX
SQ   Sequence 4631 BP; 1749 A; 640 C; 942 G; 1298 T; 2 other;
     agtgagtgag tgctcgttca agcagactac tttattgtga ctgaagttaa tattaaaaaa        60
     aaacccgtgt aaaattagct aatgagtaat taatcgtaca tcattagacg cgttaatgaa       120
     ttctctgttg aatggtgctt agtgcgcagc gttaaaatcg agataatcga agaaacaccg       180
     ggaattatat tttattactg cggtacaatt tcgattcgct ttgtattgaa agtgaaaaaa       240
     gaacaaagcg gccgtaggcc gtatacagta caagaaaggt agcaacgcga acagaatgtc       300
     ggtgcagtgc catgtttgtg ctaagggaat aaacacagcg aacgacagag tattttgctt       360
     tggcggttgc ggccaagtgc tgcatacgaa atgtgcggat ttaacaaacg ctgaagctac       420
     agctctacgt ggaaatgtgt ccataaaata tatgtgtcac gattgccgaa agaaacaagt       480
     ttgtttaaat acaatgatga gcaaatggga agagattgtg acggcaatca atgaaattaa       540
     aattcgtttg caaaaaattg aatctaattg tgaaagaatg aatgtagcag agatgatatc       600
     gaaaagtgaa caaaacataa aaacgatcat tgagcagtct attagtgcac aaatgagtcg       660
     atgcagaagt ctaggagatc aatgtctcgt ggtcgaaaaa gatttacaaa atatagatgt       720
     ttttgttgtg ggcgaaggct cagcagttag tgatgaaaat tcatcttcca gctatgctgc       780
     agttgcgaaa agcaataaaa awacgagtgt gagtgattct gtgttgcgtt cgggtcgcat       840
     tagaaataaa agttctgtga caacccctac aactttcggc aatggtcgaa agttgaacaa       900
     ccgtsggatc gatgccaatg aagtgattat ggtaaacgat aatagtggga aaagttccaa       960
     aaaaacatta gaatgcacag tgcggattaa gcctaccgtg caacagagca accaacagac      1020
     aaagaaagag gtaagggaaa aaatcaatcc atcccaaatg ggtatcaaga gtgtgcgtaa      1080
     tggggtgaat ggtgcaattg tggttgaatg tggaacaaag aatgaagccg aagggcttgt      1140
     caataaatta agagatgaat taggcgaaaa ttatgccact aagattgagc aaccaaaaag      1200
     acctagaatc aaaattctgg gtgtcgaaga tgagtatgag tccgatgatt tgaaagacat      1260
     tttgaatagt cagaatgata tttgcaatat tgaatacttg cgtattttga aaacaatcaa      1320
     gcatcgtaga ggggtttata ctgaatttac ccttatttgt gaaactgacc caggtacatt      1380
     tgagcaaatt atgcgtaaag gaaaacttta tattgatcta agcagctgta gagttacaga      1440
     aagcattgat atactacgat gctacaaatg ttgtggttat gctcataaat cacaagaatg      1500
     caaaaatcag cttcattgtg caagatgtgc agagggccac gatattaaag agtgttcatc      1560
     ggaacaacta aaatgcataa attgcgtagt ttcaaataaa gaacggaaaa caaaactaga      1620
     cgtaaatcat agcgcaagaa gcttcaactg tccaatttat ttgaataaaa ttaagttttc      1680
     aagacgattc attgattatg agaaatagca atcaaaaagt agggcggaca ttatattttt      1740
     gaatatttct ggaattacag cccattttga tgaacttaaa ctacttgtgg ataataaaaa      1800
     accgaaactg gtgatgctaa ctgaaacaca tttgacagtt gacatcaata ttactgaata      1860
     tagcataaga aattacaaga tttgttgttg cttttcatgt tcaagacata ctggaggagt      1920
     aatgatgtac attcacaatt ctataaagta tcaagagata agtaatgtaa tggtaggaca      1980
     aaattggttg gtagcaataa atgtagccaa agggctaaga actggagtgt ttggattgct      2040
     ttatcattca ccaaatggta gtgataaaga atttctagaa tatttggagc atgattggtt      2100
     cgaaaatgta ctgaatgaca gtcaaatgaa tttgattgct ggagacttca atatcaattg      2160
     gcggaatcca aatgacagtg ggagtttacg taatgttaca caatgtttca atttaagtca      2220
     aaaagttcat gaagtaacaa gacgtaccag attatcggaa acaataatag atttggtatt      2280
     ctgtaatgag gaaactattc gagtgtcagt tgaagatgaa agtaaaatat ctgatcatga      2340
     aacgttgaga attgatttat ttgataactc cgagcctgtt gatgatttcc tgactattaa      2400
     atgctggaaa aaatatacga aggatgcact actgacaatt ttgagagaaa aatatcaaaa      2460
     tgagagccct agattgttag acgaaaaagc agatatttta ggaactattt tgaaagaaag      2520
     cgtaaataaa cttgttgtga taaaaaccat aaaatgtcga tctcgtaaaa agtggtatag      2580
     tttagaatta aaaaatctgc aagttttgag agatgaggca tataaaaagg cgagcacaag      2640
     ttgggacgaa gcagactggc aacattacaa agtattacga aatgagtact cacactctat      2700
     tagaaatgca aaggcagaat acacgcagag aaaaataacc caaagcaaac ataatagtaa      2760
     acaactatgg aaaacattaa aagcattgtg gaaaaatcgt gaaaaccctg ctagttgtgt      2820
     cagtttcaac ggaaacagca gtgataatga tcaagaaatt agcgagaaat ttaactcata      2880
     tttcatagat agtgttcaag tgataaataa cagtatagaa gacgttcctg atatatgtag      2940
     tgatagaaat ccccaattgt tagagaggtg gagcgtattt cgccggattt caatggaaac      3000
     tttaaaaaat gcgatatata gaataggtag ttcatcagga atggataacg taaatcttca      3060
     ggtgctaaaa gactcattcg aagtaacagg tgaatattta ctagatataa tcaatgaatc      3120
     tctcgaaacc ggacattgtc cgaatgtatg gaaacagtca atggttgtac cgattccaaa      3180
     agtatctggg acaacgaaag ctgaagagtt tagaccaatc gatatgctgc caatttatga      3240
     aaaagtacta gaaatcattg tgaaagatca attactggaa tatttaagtg atcaaaatat      3300
     attaatcgat gaacaatctg gatttagaca gaagcattct tgcgaaacag cacttaactt      3360
     acttttatat aaatggaaac gaatgatcga agagaaaaag acaattgttg ttctgttttt      3420
     ggatttaaaa agagcatttg aaacaatatc acgccctatc ttgttgaaaa cattgcgtga      3480
     ttatggaatt gcgggaaaag tcctggattg gtttgagtca tatttgacta atagaacaca      3540
     aaggtgtcaa tacaatggta caacttctac acccaaagct gtaccgttag gagtacctca      3600
     aggaagtgtt ttagggccat tattatttat aatgtacata aatgacatga aaaaaggaat      3660
     caaatattgt gatatcaatc tgtttgcaga cgacactgtt ttattcattg gagaaaaaga      3720
     tccttcgaca gcaatatgga aaataagaga ggatattgaa acgttggcaa aatggctaaa      3780
     attcaaaaag ttaaaattaa acgtacaaaa gaccaaattt atgattataa cgaatagaaa      3840
     acaaattaat atcgaagaat ttaaactcga aattgacggc gctgaaatcg aaagagtaga      3900
     agtatttaag tatttaggga tttatattga ccagaaattg acattcaaag ttcatataga      3960
     aagtttagtt aaaaaagtag ctagaaaata tggtatgttg gtgcgtctga aaagtcagtt      4020
     aacattctgg agtaaaatat ttctatataa aacattagtt gcgccacaca tagactattg      4080
     ctcatcggtt ttatacctcg ctagtgacat acacctgaaa agactacaaa aattgcaaaa      4140
     caaatttatg agatttattt tatgttgtaa taagtatacc cctgttcgaa ctatgttaga      4200
     gacactgcaa tggcagtcta ttaagcaacg tattattttc aatgtgcttg tactgatata      4260
     taaactgacg aacaatcttt tgccagatta cttgtgtaat attgttgtga gagggagaaa      4320
     tttacaccag tacaggacaa gacatattga cgatttgcgt gttgtgccgt tcacaatgac      4380
     cacaaatcaa aaatcaatat attacagtgg gataagaaca ttcaatcagt tgccattgga      4440
     tgtaagaaat gtaagaactg ttaatgaatt taaacgaaaa tgttctgtat ggattaaaat      4500
     aagcatagat taagatgata acttatgaat ttttgtatat atatatattt tttttttgta      4560
     acaatttgtg aattcttgta aaccaaacta tctgaagata aataaatatg aactactact      4620
     actaaaaaaa a                                                           4631
//
ID   L2B-2_BTa   repbase;    DNA;    INV; 5335 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5335
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 713-713 (2018).
XX
DR   [1] (Consensus)
XX
CC   5'-end is consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2039..5188
FT                 /product="L2B-2_BTa_2p"
FT                 /translation="MAGRKKGRENIKWGKNKGRTPIIILEGNVNKVDRSIG
FT                 QGMSKQGKTNKVGIKQGTRTERGEIKGMSVKKFEGREGRKKNIIVGQREEV
FT                 REAGRDKGDAMPGEVSIKCINVGGLYEKLDEIKKIIEGKKIDVLGVVETHI
FT                 TDRTGDGELRLEGYNMFRCDSHSSHTGGVILYVNNNLEVLKEEVVRNSEWW
FT                 AINTEVKIGDKYLNIGGIYRSPSCSEKRFIEWFEGWVGKEIEAGGIGITMG
FT                 DFNIRWEKQENWDTKLLKQVEMNWGMTQRVKEYTRITDKCKSIIDLAFEWG
FT                 KDRIMEKCWVEHTPKIRDHSWVSVTVKGKVKDVNRIRYKIKIRRMEEKRVD
FT                 EIKDVRNEGETLDEFYKKFENKLRELGTVECKTVVKRRVRWWNAELGTLRK
FT                 VRDEKYREYVSKRRDEDWVEYKRARNKFVREAKRFKKEFVCKILRENRRDG
FT                 KKTWKILNDLIGGKKTEGRRNEVIRVGDKKFMGIEGANEINKYLVESVMEL
FT                 NETIKCNKEWVMYGVERGRETYKELAEFREVTVNMVEEVIGKLKNSVGDFP
FT                 VCSNIIKRYREKMGGIITEIVNQALRGGNIPEVLKKAVVTPIPKVKNTRKV
FT                 EEMRPINTLPVVEKIIEGVVFKEIVEHFENKKIFIEEQRGFRKGRGAEELI
FT                 QMLFKEWREGENKGKVIVGVFLDLKRAFETVDREILLKKLELNGVKGKALE
FT                 WFKGYLRNRKQVVNWSEVLSDELCVELGVPQGSRLGTVLFLIYINDIKKVL
FT                 GVCKLRMFADDTLIYMIGEDVAEVQEKLSEELNRVDEWLRINKLKLNIEKS
FT                 KFVVFSSKEEYRNLEVRIKIGEEILGRVREYKYLGVMVTEDLRWDRQIEII
FT                 VSEYRRRVSLLWRMKNVLTIEGKKLLYHAVVGAILNHCTTVLFEAGKGVIE
FT                 RLQVGQNNAMRYMLKRGREENIGGMLNELEWLCIELFIKYRAFVFIYKIKK
FT                 GYIKGVDEELKKLMWGDNSKGTRHGGEVWAYHEKGNVDKMVFYKGVREYNK
FT                 FKCYKLEELGLKAFKMNLLFKMRIYQNDNWGDGRLLREVDRVGL"
FT   CDS           join(447..830,812..1816)
FT                 /product="L2B-2_BTa_1p"
FT                 /translation="MASAIRKKIGDLGKSKVDSPAGDGGKKKMGDSPAIVS
FT                 EGKKLRSGSVRSEVGVGSGTPKVRLPPRSRSEERLIGDKRKGVTKVKKLKL
FT                 KMGEEIIRQEKVIENKGGVVKINGGEEDEIRIRSGKQEIVWEARDCITSDG
FT                 NRDNMQDLERTLTDCTLEDNLEDELLNTRMENMEIGIIINSVGTCCECWSE
FT                 VKENEKAIRCDGVECNWGLHHIKCIGMGETELEVLNKYVRNIMWFCDRCAE
FT                 ESNRAMGDMVMINDEMKIEKEKMRVELDRAYEKLRVAEIKGDEIRNKMLKL
FT                 CVEAGEGDTVEEVRMRIYEQVRGEKERIEKRVEVKNKVSVRNKVIWALGDE
FT                 YTMRVGERLQNELFRDGVRIVSETKGNDKMDKWARYWHDNRSELEAGDVII
FT                 FAAGRSDVFANEGQRVIDGIGDWGCEAEKMGVHFYYVGITHRHDLWVNSCL
FT                 NKEIDRVNRKLAKNFVRN"
XX
SQ   Sequence 5335 BP; 1892 A; 446 C; 1667 G; 1324 T; 6 other;
     agttctgctt cgcgcgccgt cggggaaggt acctacacgc gtatctcgtg gatctcgtga        60
     ttacgtgatt tcggctttgc ggtctttttt ttcgcgtgat tcgtttttac gatttttgtc       120
     ttgcgattat tgttggttga ttcttgttct agtttctagt gatmttgtag tgtaattkat       180
     cttggattgt ggaaattggt ttkgwggaaa ttggatcacg tgattacgtg attctgcttt       240
     gcggtctttt tttcgcgtga ttcgtttttg ctttgcgatt ttttttggtt tagtcttgtt       300
     ttttgtttcg gttttttgtg atggttgtct agtgatcttg tagkgtaagt gatcttagag       360
     tgtaactagt gagtgttgtg tgtgtgaagc gtgtggctgg acaaacgaac gatagtgtgg       420
     tagaggttag agtgaatcaa tttagtatgg cgagtgctat taggaaaaag ataggggatc       480
     tagggaagag taaggtggat agcccagcgg gggatggggg aaagaaaaaa atgggggata       540
     gtccggcgat tgtaagtgag ggaaaaaaac tgaggtctgg tagtgtgaga agcgaggtgg       600
     gagtaggctc ggggacacct aaggtaaggt tgccaccaag gagtagaagt gaggagaggt       660
     tgattgggga taaaagaaag ggagtgacaa aagtaaaaaa gttgaagcta aaaatgggtg       720
     aggaaatcat taggcaagag aaggtaattg agaacaaagg tggagttgtg aagataaatg       780
     ggggcgagga agatgagata aggatacgta gtgggaagca agagattgta taacgagtga       840
     tgggaataga gacaatatgc aggatttgga gaggacacta acggattgca cactagagga       900
     taatttggag gacgaattat tgaatacgag gatggagaat atggagattg gtataataat       960
     taatagtgtg gggacatgtt gtgaatgttg gagtgaggtg aaggagaatg agaaggcaat      1020
     tcggtgtgac ggtgttgaat gtaattgggg gctacaccac attaaatgta taggaatggg      1080
     ggagactgaa ttggaggttt taaataaata tgtgaggaat ataatgtggt tctgcgatag      1140
     gtgtgctgag gagagtaaca gggctatggg ggatatggta atgataaatg atgagatgaa      1200
     aattgagaag gaaaagatga gagtggaatt ggacagagca tacgagaaat taagggttgc      1260
     ggaaattaag ggtgatgaaa taaggaataa aatgttgaag ttgtgcgttg aggctgggga      1320
     gggtgacacg gtagaagagg tcagaatgcg tatctatgag caagtcaggg gagaaaagga      1380
     aaggatagaa aaaagggtgg aagttaagaa taaagttagt gtaagaaaca aggtaatttg      1440
     ggcgttgggt gatgaatata cgatgagagt gggggagaga ttgcagaatg agttgttcag      1500
     ggatggcgtt aggatagtaa gtgagacgaa aggtaatgat aaaatggaca agtgggcgag      1560
     gtattggcat gataatagaa gtgaattaga agcaggggat gtgatcatat ttgcggcagg      1620
     taggagtgat gtttttgcaa atgagggaca gagggtgatt gatggtattg gggattgggg      1680
     gtgtgaagct gaaaaaatgg gggttcattt ttactatgtc gggataaccc acagacatga      1740
     tctgtgggtt aacagttgcc taaataaaga aatagacagg gtcaatagaa agttagcaaa      1800
     gaattttgtc aggaattagg gggagtacat tcatttgaat tatttgactt cggatgattt      1860
     taaaatcaca aaaagggact actgtacact gaatgggagg ggtaccgatc aggtggtatg      1920
     ggtgctcttt ataatcagct ggcgatggat agggtaatta agaggaagaa ttttgggtag      1980
     agcagagaca aaaacgaaat atagtgttgg ctgggggaaa aattttggta gggtttgcat      2040
     ggcagggaga aaaaaaggga gggagaacat aaagtggggg aaaaacaagg gtcgcacacc      2100
     tattattatt ctggaaggta acgtgaataa ggtcgacaga agcatagggc agggaatgag      2160
     caaacaaggt aaaacaaata aagtggggat caagcaaggg actaggacag agagggggga      2220
     gatcaaaggt atgtcagtaa aaaaatttga agggagagag ggtagaaaaa aaaacataat      2280
     agtaggtcag agggaggaag tgagggaagc gggcagagac aagggggacg ctatgccagg      2340
     ggaggtcagt atcaaatgca taaatgtagg gggactgtat gagaagctgg atgaaattaa      2400
     gaaaataata gaaggtaaaa aaatagatgt attaggcgta gtagagacgc atatcacaga      2460
     taggactgga gatggggagt taagattaga ggggtataac atgtttagat gtgattctca      2520
     cagctcacat acagggggag tgatattgta tgtaaacaat aatttggaag tattaaaaga      2580
     ggaggtggtg agaaatagtg aatggtgggc aattaatact gaagtaaaaa ttggtgataa      2640
     atatttaaac attgggggaa tatataggtc gccatcgtgt agtgaaaaaa ggttcattga      2700
     gtggtttgag gggtgggtag gaaaggagat tgaagcaggg gggattggta taacaatggg      2760
     ggactttaat ataagatggg agaaacagga aaattgggat acaaaattat taaaacaggt      2820
     agaaatgaat tgggggatga ctcagagggt aaaagagtat acgcgaatca ctgataaatg      2880
     caaatcaatt attgacttgg catttgaatg ggggaaagat aggattatgg agaaatgctg      2940
     ggtggaacat acacccaaga ttagagacca tagctgggtg agtgtgacag ttaaaggtaa      3000
     agtgaaggat gtaaacagaa taagatacaa aataaaaatt agaagaatgg aggaaaaaag      3060
     ggtagatgaa attaaagatg ttagaaatga aggggaaacc ttggatgaat tttataaaaa      3120
     atttgagaat aaactgaggg aattggggac ggtggaatgt aagacggtgg taaaaagaag      3180
     ggtcagatgg tggaatgcag aactggggac tcttaggaaa gtgagggatg aaaagtatcg      3240
     agagtatgtg agcaaaagaa gggatgagga ctgggtagag tacaagagag ctcgaaacaa      3300
     atttgtaagg gaagcgaaaa gatttaagaa agaatttgtt tgtaaaatat taagagaaaa      3360
     cagaagggat gggaaaaaaa cttggaaaat cttaaatgac ttaattggag gtaagaaaac      3420
     ggaggggagg agaaacgagg taataagggt tggtgataag aaatttatgg gaattgaagg      3480
     tgcgaatgag attaataaat acctggtaga aagtgttatg gagttaaacg aaacaattaa      3540
     atgtaacaaa gagtgggtga tgtatggggt agaaagggga agggaaacct acaaagagtt      3600
     agcagagttt agggaggtaa cagttaatat ggtggaagaa gtaattggta aattaaagaa      3660
     cagtgttggg gattttccag tgtgctctaa tataataaaa aggtacaggg aaaaaatggg      3720
     gggaataata actgaaatag taaaccaggc attgagggga gggaacattc ctgaggtatt      3780
     gaagaaagcg gtagtaacac cgatacctaa ggtaaaaaat actaggaaag ttgaggaaat      3840
     gcgtccgata aatacattgc cagtggtgga aaaaattata gagggggtgg tattcaagga      3900
     aatagttgaa cattttgaaa ataagaaaat atttattgag gagcaaagag gatttaggaa      3960
     gggaaggggg gcagaggaat tgatacagat gttattcaaa gagtggaggg agggtgaaaa      4020
     caaaggcaaa gtcattgttg gtgtttttct tgatttaaag agggcatttg aaacagtgga      4080
     tagggaaata ttactaaaaa agctggaatt aaacggggtg aagggtaaag ccttggaatg      4140
     gtttaagggc taccttagga ataggaaaca ggtggtgaat tggagtgagg tattatcaga      4200
     cgaattgtgt gtcgagctag gtgtaccgca agggagtaga ttggggacgg tgctgttctt      4260
     aatatatatt aatgatataa aaaaggtgct gggtgtatgt aagcttagaa tgtttgcaga      4320
     tgacacattg atttacatga taggcgaaga tgtagcggaa gtacaagaaa aactgtctga      4380
     ggaactgaat agagtagatg aatggttaag aataaataaa ttaaagctca atatagaaaa      4440
     atccaaattt gttgtattta gttcgaaaga agagtatagg aacttagagg tgaggataaa      4500
     aattggggag gagatattag ggagagtaag ggaatataaa tacttggggg tgatggttac      4560
     tgaggacttg agatgggaca ggcaaataga aataatagtg agtgaatata ggaggagagt      4620
     aagtttgctt tggaggatga aaaatgtgtt gacgattgag gggaagaaat tgctgtacca      4680
     tgcagtagtg ggggcgatat taaatcactg tacaaccgta ctctttgaag ctgggaaggg      4740
     agtgattgaa aggttacaag tggggcaaaa taatgcaatg aggtatatgt taaaaagggg      4800
     tagagaagag aacattggag gaatgttaaa tgagttggag tggttgtgta tagaactgtt      4860
     catcaaatac agagccttcg tatttattta caaaattaag aagggttata taaaaggcgt      4920
     agatgaggaa ttaaaaaagc taatgtgggg tgataattca aaagggacta gacatggagg      4980
     tgaagtctgg gcatatcatg aaaagggtaa tgtggataag atggttttct ataaaggggt      5040
     aagagaatat aataaattta aatgttataa gttggaagaa ttggggctga aggcatttaa      5100
     aatgaacttg ttgtttaaaa tgaggatata tcagaacgat aactggggtg atgggagatt      5160
     gttgagggaa gtcgacagag tgggtttatg aattggtgaa tgaacggtgt gtgaagtcga      5220
     atgggaatag ccttccagcg gggcgattat tgaaatgata tcgactgtat gtcagcgctt      5280
     tgtcgtgtcg cggcatcgan aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa           5335
//
ID   L2B-2_CQ    repbase;    DNA;    INV; 5265 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5265
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 143-143 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >84%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           322..1047
FT                 /product="L2B-2_CQ_1p"
FT                 /translation="MSLCGKCEQKICFEDAVPCSGKCGAFFHRSCTTLTKA
FT                 AAKMINEQPNVQFKCDPCLDSGVDAEIAVLLADVKGIKEELKKYSDISDSI
FT                 PGINESIATRIDEAIKKGIEDVMKACSEIFQKXIKTVVESSVATXIEKAIK
FT                 SNSXKCXNERIVKVTRKRGTHSESDGLPGSKRRAVDTDDXEPMXVDDEEXD
FT                 NVFEXPTFAEILKGETQKLKMVFKIKNYVFIVQKLLLNLTKQIKVMIKQGL
FT                 F"
FT   CDS           1722..4466
FT                 /product="L2B-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QSNAGRKVNATDIIYLNIAGLTTNYVALRQLVESSQP
FT                 LLVLLSETHITQPEAFDQYSIPGYKVVFCLSHSRHTGGVAIYFKESIHLKV
FT                 CLNEFSENNWFLGITVEKGMKTGNYGVLYHSPSSSDQRFIQILENWLENFV
FT                 DMSKFNLITGDFNINWLDEQNSAHLKSLTEYLGLTQKVTAFTRISRNSRTL
FT                 IDCVFSNIDCVKAVVKSDWKITDHETLVITISEFNLESSDDRIKIKSWKNY
FT                 TPSAFCDLLERHVNFRTLTGELDFKSRILTNTLKNCTSELVTTEYINRKDS
FT                 NSWYNGELMRLKQKRDKLYKKFCRTNNPRHWNKYTVARNKYTKSLKTTRST
FT                 HIQNNIERNKNNSKELWKILKKLMKSKDSLPRTILFGDIEECSDDVIASKF
FT                 NNYFIESVVEINESIERTDEPVEIRNMMNRNCRLEIFNPITYVQLKKICFD
FT                 LGNSAGIDNVNAKVLKDCFHVIGHTLLEIINESLLSGQVPTVWKESLVIPI
FT                 QKVAGTKKAEEFRPINMLHTLEKILETVVKSQLLEYLNINKLLIPEQSGYR
FT                 EGHSCETALNLVLAKWKEFFENRNSTLAVFLDLKRAFETISRPLLLQTLQH
FT                 FGIGGAAFNWFKNYLNFRTQRTIFNEAISESRENNLGVPQGSVLGPILFIM
FT                 YINDMKLVLKHCDINLFADDTVIFVAAKNPIDAVLHLNEDLDALSKWLKFK
FT                 QLKLNINKTKYMIISSRHQNIQDVQISIDGEQIDRVNSIKYLGVTIDENLK
FT                 FNIHIDNTIKKIAKKYGIMCRLRNDLNFQSKIQLYKSIISPHLDFCSSILF
FT                 LANETQLSRLQRLQNKIMRLILKCNRFTSSTWMLDALQWLSVKQRIIFSTM
FT                 IFVFKLINGLLPRYLCDRILRGSDLHDHFTRNADEPRTPNFLFGAAQNSLF
FT                 YKGVNIFNSMP"
XX
SQ   Sequence 5265 BP; 1812 A; 812 C; 1039 G; 1589 T; 13 other;
     tttgttggtg tcaaacagag tagttcactt gtactgtgtt gtgataaaaa caataaattt        60
     tgcgtgttaa agtgcgagta gttggtgcta aaatattgtc aatgtgtgaa ctaagcagct       120
     gtcaactcgg ataagtacaa gttttgaaac gaacgttact atmgagttaa ttatcatcga       180
     ttttattttt caccggcaac aacggtttgc tatcggattc ggtggcggct gctgttagct       240
     gtttgttgct tttttttttt gggtcttttg tgctctgcta ttgtgttgct tggctggctc       300
     gaccgtgctc gacagcgcga gatgagtctg tgtggcaagt gcgagcaaaa aatttgtttt       360
     gaggatgccg taccttgttc ggggaagtgt ggagcgtttt ttcatcgttc ctgcactacc       420
     ctgactaaag cggcggcaaa aatgattaat gagcagccaa atgtgcagtt caagtgcgac       480
     ccatgtcttg atagtggagt tgatgctgag atcgcagtgc ttctcgctga tgtcaaaggg       540
     ataaaagaag agttgaagaa atattctgac atctctgatt ctatccctgg catcaatgaa       600
     agtattgcta ctcgaatcga cgaagctatc aagaaaggga tagaagatgt catgaaggca       660
     tgcagtgaaa tatttcagaa aaawatcaaa acggttgtag agagcagtgt ggccactsaa       720
     attgaaaaag cgataaaatc gaattcwsaa aaatgtmawa atgaaagaat agtaaaagta       780
     actagaaaaa gagggaccca ttccgaatcc gacgggctcc ccggtagtaa aagacgagcc       840
     gttgataccg atgacttwga accgatgktg gttgacgatg aagaaaakga caacgttttt       900
     gaawcgccaa cttttgcgga gattttgaaa ggggaaactc agaaattaaa aatggtcttc       960
     aaaataaaaa attacgtgtt catcgtccaa aaattgttat taaacctaac gaaacaaatc      1020
     aaagtaatga tcaaacaagg acttttttaa aatcgaatct tgaccctaaa ttgcataaaa      1080
     ttaataattt aaaaaatggc agggatgggt ccattattgc ccaatgcgcg ccaggacaaa      1140
     acctttctaa agtgawaagt gacattgaaa acagacttgg ctaaaattat actgcaatcg      1200
     tctcgactgg ccttccaaag ctgaaaatcg ttgggatgag tgaaaagtat gctcctgaag      1260
     atttcgttga gttattgacc acacagaatg acgaaatttt tattgaacat gtaaaggtta      1320
     tatcttctta cgaaaaccct cgcatgaaat acaacaaatt tagtgcaata attgaagtta      1380
     ataatgacac ttttgacgca ttgataacgg ccggaaaggt caacatagga tttgatagat      1440
     gttcagtttt tgaggctatt aaggtcctga gatgttttaa gtgtggagaa tttggacaca      1500
     tgagcacaac atgtacaaac agcgaaactt gttcaaagtg tagcgagtcc cataagacct      1560
     ctgagtgcac ttcaacggta atgaaatgtg ttaactgctt gaaaaagaat aaggagcaaa      1620
     agatgaatct tgatgtgaat catgctgcat ttagttcaaa atgtccagtt tttcgacact      1680
     tagctgcaat taaaaaggat cgtatgtatg agaatgaata gcaatcaaat gctggcagga      1740
     aagtaaatgc tacagatata atctatttga atattgcagg actgaccaca aactacgtag      1800
     cattacgaca gttagtggaa agttcgcaac ctcttttagt attactttct gaaacgcata      1860
     ttactcaacc ggaagcattt gatcaatatt ccattccagg gtataaagtt gtattttgtt      1920
     tgtcacactc taggcatact ggaggagttg ctatttattt taaagaatct attcacctta      1980
     aagtgtgttt aaacgagttt tctgaaaata actggttttt gggcattaca gttgaaaaag      2040
     gcatgaagac gggtaattat ggagttttgt atcattcgcc aagctctagt gaccagcgat      2100
     tcattcaaat tttagaaaat tggttggaaa atttcgtaga tatgagtaaa tttaatttaa      2160
     taactggtga ttttaatatt aattggcttg atgagcagaa ttctgcacat ctaaagagtc      2220
     ttacagaata tttaggttta acacaaaaag taactgcttt cacaagaatt tcgagaaata      2280
     gtagaacatt gattgactgt gttttctcta acatcgattg tgttaaagct gtcgttaaaa      2340
     gtgattggaa aataacagac cacgaaacac tggttattac aatttcagaa tttaatttgg      2400
     aatcttcgga tgaccgcatt aaaattaaat cttggaaaaa ctatacacct tcagcttttt      2460
     gcgatctttt ggaaagacac gtaaatttta gaacattaac tggagaactc gacttcaaat      2520
     cacgaatttt gacgaatact ttgaaaaatt gcacaagtga attagtaact acggagtaca      2580
     taaacaggaa agattcgaac agttggtata acggtgaact tatgagattg aaacaaaaaa      2640
     gagataaact ttacaagaaa ttctgccgaa caaataatcc tagacattgg aataaataca      2700
     cagttgcaag aaacaagtat acaaaaagtt taaaaacaac cagaagtact cacattcaaa      2760
     acaatattga acgaaataaa aataacagta aagaactatg gaaaatattg aaaaaattaa      2820
     tgaaatctaa agatagtctt ccaagaacta ttctttttgg agatattgaa gaatgttccg      2880
     atgatgttat tgccagtaaa tttaataatt attttattga gagtgttgtt gaaataaatg      2940
     aaagcataga gagaactgac gaacctgttg aaatcaggaa tatgatgaat agaaactgca      3000
     gactagaaat cttcaatcct ataacctatg ttcaacttaa aaagatttgt tttgatttag      3060
     gaaactcagc agggattgat aacgtaaatg caaaagtttt gaaagattgt tttcatgtca      3120
     ttggtcacac tttgcttgaa attataaatg aatcactttt gtcgggtcaa gttccaacag      3180
     tctggaaaga atctttagtt attccgattc aaaaagttgc tggtacaaaa aaagctgaag      3240
     agtttcgccc tatcaacatg ctacatacgt tagaaaaaat tttagaaacg gtcgtgaaat      3300
     ctcaattgct tgaatacttg aacataaata aattattaat accagaacag tcgggatatc      3360
     gagaaggcca ctcttgtgaa actgcattga atttggtttt agcaaaatgg aaagaatttt      3420
     ttgaaaacag aaactccact ctggcagtat ttttggactt aaaacgggca tttgagacaa      3480
     tttccaggcc cttattatta cagacactcc aacattttgg tatcgggggt gcagctttca      3540
     attggtttaa aaactatttg aattttagaa ctcagcgtac gatttttaat gaagctattt      3600
     cagaatctag ggaaaacaac ctcggtgttc ctcagggaag tgtattaggg cccatattgt      3660
     ttataatgta cattaacgat atgaaactag ttttgaaaca ttgtgacatt aatctttttg      3720
     cggatgacac tgttattttt gtagcagcga aaaatccaat tgacgctgta ttgcacttga      3780
     atgaagattt agatgctctt tccaaatggc tgaaattcaa acagttgaaa ttaaatataa      3840
     ataaaaccaa atacatgatt atttcatcaa gacatcaaaa catacaagat gtacaaattt      3900
     caattgatgg ggagcaaatt gatcgggtta attcaataaa atatttaggg gttactattg      3960
     acgaaaactt gaaatttaat attcatattg ataacacaat taaaaaaatt gcaaaaaagt      4020
     atggaattat gtgtcgtcta agaaatgacc ttaactttca gagcaaaatt caactttata      4080
     aatctataat ctcaccacac ctagactttt gttcatcgat attatttttg gcaaatgaaa      4140
     cacaattatc taggcttcaa cgcttgcaaa ataaaataat gcgtttaatt ttaaaatgta      4200
     acagattcac ttcwtcgacg tggatgttag atgctctgca atggctatct gtgaagcaaa      4260
     gaataatttt ttccactatg atttttgtgt ttaaattaat caatggtttg ttgcctagat      4320
     atttatgtga tcgaatttta agaggtagtg atcttcacga tcattttaca agaaatgcag      4380
     atgaacctcg cactccgaat ttcttatttg gagctgccca gaattccctg ttttataaag      4440
     gtgtgaatat ctttaactcg atgccctgac aaatcaaaca gtcaacgaca atagcagagt      4500
     tcaaaagacg gtgttgctcg cacattaaat tagtatttta agtttgactt cgtatagcta      4560
     tatattgacg gaattctgaa acgaacgcac aagttaattg ctcagtatga ccacgtgatg      4620
     atgatggatt tttttttgtt ttcgaaatgt tggtttaaat tagagttaaa aaaagtaaat      4680
     gagaagtcta caaaggtttg agaatcgcgc gcggtatgca aatataatgt gcctcttaag      4740
     ttgacgatga tgaaagtaaa tgtttctttc tatgtatgat gaaaattggt agttgctctg      4800
     aagacgggag agctcggaag gctacaggga aagctagtct agtaggtttt ggcggtcgaa      4860
     agatagggtc tcgaaaagta ctaagtcttc aggcaaagct cgttacgtac actctgtcag      4920
     gtaaaacagt agggtgcgat ctcgggcaat gccatgtaag cttgtcactt agtagagacc      4980
     cagttcagat agatacaagt aaaactatat gtgctccgaa cggtagttag taccagatgc      5040
     gattccttga agctgataca gttacaggcc tatcaactag taatctacga aagtaaactg      5100
     taatgacgga gttaactgaa aggctaattt atatctgcta ttaaaaatca gttcgttttt      5160
     ctttgcataa ctgattcaaa tgttcaatca aaattatcat aacgataact cgtccagctc      5220
     aaacctttgt aggggtaaga ggtgggacca tcatcatcat catca                      5265
//
ID   L2B-2_PBa   repbase;    DNA;    INV; 4515 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   L2-type retrotransposon sequence - a consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4515
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 749-749 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           325..1614
FT                 /product="L2B-2_PBa_1p"
FT                 /translation="MLESDYAEYRCCACKKEIKSVVLQCTACVKFFFHPGC
FT                 AFKHKVYNKQDELVRCEGPFKEIIGDSDKTEMKKTPAAGGSRDRLGSTGST
FT                 GSTGTAVTTSGASKQTGMEVKIDWLIRTVREIKDEVACKNEIKTMIAKIIR
FT                 EELETFRRELEEVKRNMQEKTTGISGHGLGSYSAAVKNKKKESILIVQPLK
FT                 EQESETTKKLVKEKVDIKKMEVGITKLRKGSKGSVILGCESEGEMEKLKDT
FT                 VREKLGEDFKITEPKKIRPKIKVVNVGEEEIQLKDEILIDTIKKQNTIDGR
FT                 EDEEFGIKIVKRIVEGDSLILEVDEMTHELMLRREKINIGWRKCRVFNHYS
FT                 VKRCFKCWGYYHIAKNCKRQETCHKCAGNHRAGECKAKKMRCVNCMHKSKT
FT                 YNLKINDEHDALSRKCPTFIRALEEEKKRTGWESTK"
FT   CDS           join(1663..2646,2625..4445)
FT                 /product="L2B-2_PBa_2p"
FT                 /translation="MAHKDEIQDYMKGMNLAIMALSETRLVPEIEDSELNV
FT                 PGYDLVRCDGENRNTGGVVIYIRKDIKYQVIAKKKIESNCWCVAVEMRDNI
FT                 YKGVIIVVYHSPSASDGDFIKFLEDIVDLLVTKGQCIMLGDFNIDLMTDMF
FT                 YAKKLINEMLCLGMKQYVDKPTRITKNSQTLIDLVFANTKINCKVYDKPKV
FT                 SDHSWISVEINISNNKVKYREFISRDFSKFQINEFLYEIGKRLEQRGNLEV
FT                 NERAEKFVQNMVAALDIIAPKKKFKIPKLWEGKKWYSDDIRLATNKRDEAY
FT                 VRAIYTCNEQDWLQFKIERNTVVKLIRNKKKNTMKKKKEYYEKMIDDNKND
FT                 PVLMWKTLKEVIRGETMGSREINNIDFEILENVGECTLANKFNIFYIQSIK
FT                 EIIESIRKNDSKSTKTIFVIESRGIIENFECINVQKLEKIVMALPQKKGTD
FT                 EGISSDILKISFQVIKDELLRVINESLTNGICPEGWKTSTIIPIPKIEKPK
FT                 KACEYRPINILPIYEKVLELVVKEQIEKYLHSNDIITEHQSGFRKYHSCET
FT                 AIQSVIDDWKLIISEGKMIGVIFLDLKRAFETIDRKRLLGKLDQYGMRGMV
FT                 LEWFKSYLSNRTQQVRFNNQWSKCIKTEYGVPQGSVLGPLLFIIYINDLVE
FT                 FCPEECNIKMFADDTLVYVSGESSAELERKMNMVLSIVEEWMSVNKLKMNA
FT                 NKTKYMIIRSVRKEQKGNIILRCSDGIKLERVEKIKYLGVIIDDKLQFKDH
FT                 CDYMLKKIGKKTSFLNRIGNFVSAYTRCIVHKSIIAPHFEYCATLLVGMGE
FT                 TQLSKLQVAQNRAMRVILQCNRYTKVEDMLQALQFMSVRQRLYYNVGVFIF
FT                 KILNNMAPMALSNRLEIVGSECDRQTRQAGNIVLTFRKTRSAQKSLFYEGI
FT                 KIYNSLPTEIKQCVKIESFKRMLKVYVVNSV"
XX
SQ   Sequence 4515 BP; 1770 A; 521 C; 1066 G; 1158 T; 0 other;
     ctctctctct ttttgaggca gacgtgtgtt acatcgctcc gtgaaaatca tagtttttac        60
     ggtgacccaa gagggcggag gggaacaaga gtttccacag tggtggtagt atcgactata       120
     aatatgtgtg tgcgttatct agtcggaatg tgttgaatag tccaagaaag gtgagaattt       180
     atatgtgaca ttctggtgct tgaaagacag gtgtcaatta aagtgccgac gtggattatt       240
     cggcgaccgc ggacgctaag gtaactaatt agtggaacgc gtggtgattt atcgatattg       300
     aggataacag tcggtaatga ggacatgctt gaatctgatt atgcagagta tcgttgctgt       360
     gcgtgcaaga aggaaataaa aagcgttgtg ctgcagtgta cggcctgtgt gaaattcttc       420
     tttcatccgg gatgcgcttt caagcataaa gtatataata agcaggatga attagtaaga       480
     tgcgaaggac catttaaaga aatcattggc gacagtgata agacagaaat gaagaaaacg       540
     cctgcagcgg gtggcagtag agacagattg ggatcaacag gatcgacggg ttcgacggga       600
     acagcagtga ctacatcagg tgcgagcaaa caaactggaa tggaggtgaa aattgattgg       660
     ttgattagaa cagtgaggga gataaaagat gaagtagcat gtaagaatga aattaagacg       720
     atgattgcaa aaatcattcg ggaagagttg gaaactttta ggcgtgaact tgaagaagtg       780
     aagaggaata tgcaggagaa aaccactgga atatcaggac atggattagg aagttatagt       840
     gcggcagtaa aaaataagaa gaaagaaagc atcttaattg tccaaccgtt aaaggaacaa       900
     gagagtgaaa ctaccaagaa attagtaaaa gaaaaagtag atataaagaa gatggaggta       960
     ggaataacaa agctgaggaa aggaagtaaa ggttcggtca ttctgggatg tgagagcgag      1020
     ggagaaatgg aaaaactgaa agatacagta cgcgagaagc taggtgaaga cttcaagatc      1080
     acagaaccga aaaaaataag accgaaaata aaagttgtaa atgttggaga agaagaaata      1140
     cagctgaaag atgaaatctt aattgatacg atcaagaagc agaatacaat cgacggcaga      1200
     gaagatgaag aatttggcat aaaaattgtg aagagaattg ttgagggcga ttctttaata      1260
     ctagaagtag atgaaatgac tcatgagcta atgctaagaa gagagaaaat aaatatcgga      1320
     tggaggaagt gtcgtgtgtt caatcattac agtgttaaga gatgttttaa atgctggggt      1380
     tactaccata ttgccaaaaa ttgtaagcgg caggaaacat gtcataaatg tgctgggaat      1440
     cacagagcag gcgagtgtaa ggcaaaaaag atgagatgtg taaattgtat gcacaagagt      1500
     aaaacataca atttaaagat aaatgacgaa cacgatgctt taagtagaaa atgtccgact      1560
     ttcatcagag cgctggagga ggagaagaag agaactggct gggagtctac taaatagcaa      1620
     tcacggaagg agtcaattgt atacacgaat acgcaaagtc ttatggcgca caaagacgaa      1680
     attcaagatt acatgaaggg gatgaatctg gcaatcatgg cgttatcgga gaccagactc      1740
     gtcccggaaa tcgaagatag tgaattaaat gtgccgggat atgatttagt tagatgcgat      1800
     ggggaaaaca gaaacacagg aggcgttgtg atttatataa gaaaggatat caaatatcag      1860
     gtaatagcga agaagaagat agaatctaac tgctggtgcg ttgcggttga gatgagagat      1920
     aatatataca aaggcgtgat tatagttgtg taccattcac cgagtgcttc agatggcgat      1980
     tttataaaat ttctagagga tatagtggat cttctagtaa cgaaaggtca atgtattatg      2040
     ctaggtgact ttaatataga tttaatgacg gatatgtttt acgcgaaaaa actaataaat      2100
     gaaatgttat gcttgggcat gaagcaatat gtagataagc cgacgaggat cacaaaaaac      2160
     agtcaaactt tgatagattt agttttcgca aataccaaga taaactgtaa agtatacgat      2220
     aagccaaaag tatcagatca ttcatggata agcgttgaaa ttaatataag taataataag      2280
     gtaaaatata gagaatttat tagtagggat ttcagcaaat ttcaaataaa tgaattttta      2340
     tacgaaatag gaaaaagatt ggaacaaaga ggtaatttag aggtaaatga aagagcagag      2400
     aagtttgttc agaatatggt agcggcatta gatatcatag caccaaagaa aaagtttaaa      2460
     attccaaagt tatgggaagg gaaaaaatgg tattcggatg atataagatt agctacaaat      2520
     aaaagagatg aagcatatgt gagggcgata tatacgtgca atgaacaaga ttggctgcag      2580
     ttcaaaattg aaagaaatac ggtagttaaa ttaattagaa ataaaaaaaa gaatactatg      2640
     aaaaaatgat agatgataat aaaaatgatc ctgttctaat gtggaaaacc ttaaaagaag      2700
     tcataagagg agagactatg ggttcaagag aaattaataa tatagatttt gaaatattag      2760
     agaatgtagg agaatgtact ttagcgaata aatttaatat attttatata cagagtatta      2820
     aggaaataat agaatctata agaaaaaatg acagtaaaag tacaaaaact atctttgtta      2880
     tagaaagcag gggcataatt gaaaattttg aatgcataaa tgtacagaaa ttagaaaaaa      2940
     ttgttatggc attgccacag aagaagggaa cagatgaggg gatatctagc gatatattaa      3000
     aaataagttt tcaagtgata aaagatgaac tattaagagt aataaatgag tcattaacaa      3060
     atggtatatg tccggaggga tggaaaacat ctacgataat accgattcct aagatagaaa      3120
     aaccaaagaa agcctgtgaa tatagaccaa ttaatatatt accaatttat gagaaggttt      3180
     tagaattagt tgtaaaggaa caaattgaaa agtacttgca tagtaatgat attataacag      3240
     aacatcagtc gggatttaga aaatatcatt cgtgcgaaac agcgatacaa agtgtcattg      3300
     atgattggaa gttgataatt agtgagggaa aaatgatagg agtaatattc ttggacttaa      3360
     aacgggcatt tgaaacgata gatagaaaaa gattactggg aaaattagat caatatggaa      3420
     tgagagggat ggtattggag tggtttaaat catatctaag caatagaaca caacaagtta      3480
     gatttaataa tcaatggtca aagtgtatca aaacggaata tggagttccg caaggatcgg      3540
     tactagggcc tttgctgttt ataatttata taaacgattt agtagaattt tgtccagaag      3600
     aatgcaatat aaaaatgttt gcagatgata ctttagtata tgtaagtggg gaaagtagtg      3660
     cggaattaga gaggaaaatg aacatggtac ttagcatagt agaagagtgg atgagtgtaa      3720
     ataagttgaa aatgaatgca aataaaacaa aatacatgat aatcagaagt gtaagaaagg      3780
     agcaaaaagg taatattata ttgagatgct cggacggaat taagttggaa cgcgtcgaaa      3840
     aaataaaata tcttggcgta attatcgatg ataagctcca atttaaagat cactgtgatt      3900
     atatgctaaa gaaaatagga aaaaagacta gtttcttaaa tagaataggt aacttcgtat      3960
     cagcgtacac tagatgtatt gtacataagt cgatcatagc acctcacttt gagtactgtg      4020
     ctacgctatt agttggaatg ggagaaacgc aattgagcaa acttcaagta gctcaaaacc      4080
     gtgccatgag agttattttg caatgcaata gatataccaa agttgaggac atgctgcagg      4140
     cactgcagtt tatgtccgta aggcaacgat tatattataa tgtgggggta tttattttta      4200
     aaattttaaa taacatggca ccgatggcgt taagtaatag attagaaata gtgggaagtg      4260
     aatgtgatag acaaacgaga caggccggaa acattgtatt aacatttcgt aaaactagaa      4320
     gtgcgcaaaa gagtctgttt tacgaaggaa taaaaatata caattctttg ccaaccgaga      4380
     taaagcagtg cgtaaaaatt gaatcgttta agagaatgtt gaaagtatat gtggtaaata      4440
     gtgtataata attatgtata tgtatatgaa atagctgaga aagctaataa agttcaatca      4500
     atcaatctct ctcct                                                       4515
//
ID   L2B-3B_AAe  repbase;    DNA;    INV; 4205 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-3B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4205
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1407-1407 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to consensus. The consensus is ~79% identical to
CC   L2B-3_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..1317
FT                 /product="L2B-3B_AAe_1p"
FT                 /translation="MVGKCDNILVAINEIKNRLEKIEAKFERNGCDEAVKQ
FT                 CEQNVKLVVEESAKLHGEQLKNLETQIANSACSPAMGKGPXDGDSYPSAGX
FT                 FVEVVRRKKRVXEXDSVLRSGRVRNKSVATPKSNENRNMSARAQQVSNXKV
FT                 SEVNENGSNSNKKFGCTVRVKPXATQSNHQTKKEVRSIVNPAQVGIKSVRN
FT                 GLNGSIIVECDNENEAEGLAKIIEDKLSEGYSADIEQPKRPRIKILGVGGN
FT                 YNSNELINILRDQNDIEDVQYLNVLKCVPSKKNPENKFSLICEIDAITFER
FT                 VXRKGKLNIDFERCRVLESIDLFRCFKCCGYGHKSSECKNNLHCAKCAERH
FT                 DVKDCSSDQEFCVNCIHSNRERKTQFDVNHSSWSVDCPIYLRKITISRSYI
FT                 NYDA"
FT   CDS           1321..4122
FT                 /product="L2B-3B_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSKRATDVVLLNIAGITSHFAELEMLVSRKKPKIXML
FT                 TETHLTSDIGISEYSIRNYKMLCCFSVSRHTGGVIMYIHESVKYHVVDNST
FT                 CGLNWFVAIKVVKGLKAGVYGLLYHSPSGNEQEFLVHLEQNWLEKVXDDKG
FT                 MNLIAGDFNINWKNSSDSRNLRSVMECFDLDQKVKDTTRCTIRSQTIIDLV
FT                 FCNDDQLNVTVDHDNKISDHETIXIQFNECSQPVENHITIKCWKKYSKSAL
FT                 IXLLRNXMPNXSERQLDEKADVLRTVLKENINKLVVVRNIKCSSRKKWYTL
FT                 ELKTLQEARDVAYKKASASWDEADWQRYKVLRNEYTYSIRTAKAEFTQRKI
FT                 EQNRGNSKQLWKTLKSLWKSKEKPASRISFNGVDVDDDQDICEKFNSYFVD
FT                 SVQQINESIDDVYDCFGNDEGHVTNSWNVFHRVSYXTLIKAIAKIGSSSGI
FT                 DNVNLQVLKDSLEVTGEYLLGIINDSLEQGKFPSSWKQSTVVPIPKVSGTT
FT                 KSEEYRPINMLPIYEKVLEIIVKDQLLEYLNEHKIIINEQSGFRQNHSCES
FT                 ALNLLLYKWKRMIEEKKTIVVLFLDLKRAFETISRPEMXKTLSKYGMGGNV
FT                 LKWFESYLXDRTQVCQYGNRISSPKSVPLGVPQGSVLGPILFILYINDMKK
FT                 AIXHCDINLFADDTVIFIAEKDEKIAIRKIRGDIKSLNKWLKIKKLKLNVQ
FT                 KTKSMVISNRKQLNYSELKIRIEGDEVERVDVFKYLGVLIDQKLTFKAHID
FT                 NVVKKVAKKYGXLIRLNSQLTFWSKIFLYKTLVAPHIDYCSSVLFLASETH
FT                 LNRLQRLQNKXMRXILNCDRYTPILNMLEALQWLSVKERIIFNVLTIIFKL
FT                 TNELLPEYLTNIIIRGRNIHNHRTRRSDDLRVVPFTMTSTQKSIYYNGIRI
FT                 FNELPVEVRNARCVSEFKRNCATWIKNKYR"
XX
SQ   Sequence 4205 BP; 1513 A; 594 C; 909 G; 1154 T; 35 other;
     ggtcaggtgc tacatgcaaa atgtgccgac ttaactagtg cgggggaaac ggctttgcgc        60
     gagaatttat caatcaagta cttgtgccat gattgtagga aaaagcaagt gagtcttaat       120
     gacatggtgg gcaaatgcga taatattctc gttgcgataa atgagattaa aaatcgtttg       180
     gagaaaattg aagcaaagtt tgaacgaaac ggttgtgatg aagcagtgaa acaatgtgaa       240
     caaaatgtaa agttagtggt ggaagagtcc gcaaagttgc atggtgagca attgaagaac       300
     ttggagacac aaattgcgaa ttcagcatgc agtcctgcta tgggcaaagg cccaatsgac       360
     ggcgatagtt atccatctgc tggcascttt gttgaagttg tgaggagaaa gaagcgtgtg       420
     cawgaaamtg attccgtttt gcgctctgga cgtgttagaa ataagagtgt tgctactcca       480
     aaatcaaatg agaacagaaa tatgagtgcg agggcacagc aagttagtaa tgsaaaagtg       540
     agtgaagtga atgagaatgg aagtaattcc aataagaaat tcggctgtac agtgcgggtc       600
     aaaccaawtg cgacgcagtc caatcatcaa acgaaaaaag aagtgagaag tatagtcaat       660
     ccagcccaag ttggaataaa aagtgtacga aatggtttga atgggtcaat aattgttgaa       720
     tgtgataatg aaaatgaagc cgaagggctt gcaaaaatca tcgaagataa attaagcgaa       780
     ggctactctg cagatattga acaaccaaag agaccaagaa taaaaatact tggagtggga       840
     ggcaattaca attcaaatga attgattaac attttgcggg atcagaatga cattgaagat       900
     gtccagtacc taaatgtgtt gaaatgtgtt ccatcgaaga aaaacccaga gaataagttc       960
     tcactaatat gcgaaattga cgcgatcaca tttgagaggg tgatkcgwaa aggtaagctc      1020
     aatattgatt ttgaaagatg ccgtgttttg gaaagtattg atttgtttcg atgtttcaaa      1080
     tgttgcggat atggacataa gtcaagcgaa tgtaagaata acctccattg tgctaagtgt      1140
     gctgagaggc atgatgttaa ggattgttca tctgatcaag aattttgcgt taattgtatc      1200
     cattccaaca gagaaagaaa aacccaattt gatgtcaatc actcatcstg gagtgtggat      1260
     tgtccaattt atttgagaaa aataacaatt tcaaggagct acataaatta tgatgcatag      1320
     caatcaaaaa gagcgacgga tgtcgttctt ttaaatattg ctggcattac gtcgcatttc      1380
     gctgaattgg aaatgttggt gagtagaaaa aaacccaaaa ttmttatgtt gacggaaact      1440
     catttgactt cagatattgg aataagtgag tacagcataa gaaattacaa aatgttatgt      1500
     tgcttctctg tatccaggca cactggtggt gtgataatgt atatccatga atcngtgaaa      1560
     tatcatgttg ttgacaattc aacttgtgga ctaaattggt tcgttgccat aaaagtagtc      1620
     aaagggctta aagctggagt gtacggcttg ttgtatcatt caccaagtgg aaatgaacaa      1680
     gagtttttgg tacatttgga acaaaactgg cttgagaaag tasttgatga caaaggaatg      1740
     aaccttattg ctggtgattt caacatcaat tggaaaaaca gcagcgatag tagaaacctt      1800
     cgcagtgtaa tggagtgttt tgatctagac caaaaagtaa aagacacgac aagatgtact      1860
     ataagatcac agactattat agacttagtt ttctgtaacg acgatcagct gaatgttact      1920
     gttgatcacg acaataagat ttcagatcat gaaacaatwg maattcagtt caacgaatgt      1980
     tcmcaaccag tagagaacca catcactatt aaatgttgga agaagtattc aaaaagtgca      2040
     cttattkcac tgctgagaaa twgtatgcca aatmacagcg aaagacaatt agacgaaaaa      2100
     gctgatgttt tgagaactgt gttgaaggag aacataaaca aactkgtagt tgtaagaaac      2160
     ataaaatgta gtagcaggaa aaaatggtac acattagaat tgaaaaccct acaagaagca      2220
     agagatgtcg cgtacaagaa agctagtgca agttgggatg aagctgattg gcaamgatac      2280
     aaagttttga gaaatgaata tacatattct attagaacag caaaagcaga attcacgcag      2340
     agaaaaattg agcaaaatag aggaaacagc aaacaactct ggaaaacatt gaagtcactg      2400
     tggaagagta aagagaaacc ggcaagtaga attagcttca atggagttga tgttgatgac      2460
     gatcaagata tttgtgaaaa gtttaacagc tatttcgttg acagcgttca acaaattaat      2520
     gagagcatag atgatgttta cgactgcttt ggaaacgatg aaggtcatgt cacaaacagc      2580
     tggaacgttt ttcatcgagt ctcgtatgam acattgataa aagctattgc caaaattggt      2640
     agttcatcgg gcatcgataa tgtaaattta caggtcctta aagattcttt agaagtcacc      2700
     ggagagtatt tacttggaat aattaatgat tctcttgagc agggcaaatt ccctagtagt      2760
     tggaagcaat cmacggtggt tccgatacca aaagtatccg gwacaacgaa atctgaggag      2820
     tataggccga ttaacatgtt acctatttac gagaaagtgt tagagatcat tgtcaaagac      2880
     caattgctgg agtacttgaa cgagcataaa attataataa atgaacaatc aggatttagg      2940
     caaaaccatt catgtgagtc tgcnttaaac ttattgttgt acaaatggaa gcgaatgatc      3000
     gaagaaaaga aaactattgt tgttctgttc ttagacctta agcgtgcatt tgaaactata      3060
     tcgcggccgg aaatgwtaaa gactttgagt aaatatggta tgggaggaaa tgtcctcaaa      3120
     tggtttgagt cktatttakc tgaccgcaca caagtgtgtc aatacggaaa tcgtatttct      3180
     tcgccaaaat cagtgccgct tggagttcca cagggtagcg ttttaggacc gattctattt      3240
     attttatata tcaatgacat gaagaaagcc attmagcatt gtgatattaa tttattcgca      3300
     gacgatactg tcatttttat tgcagagaaa gatgaaaaga tagcaattag gaaaattaga      3360
     ggtgatataa aatcgttgaa caagtggttg aaaataaaaa agctcaaatt gaacgtccaa      3420
     aaaactaaat cgatggtaat aagtaacagg aagcaattaa attattcaga attaaaaatt      3480
     cgtatcgaag gagatgaagt tgagagagtt gatgttttta aataccttgg ggtcctaatt      3540
     gaccaaaaat tgacattcaa agcgcatata gataacgtag taaaaaaagt agcaaaaaag      3600
     tatggtwtgc tgatccgttt gaacagtcaa ctsacgtttt ggagcaaaat atttttgtat      3660
     aaaacmttag tggccccaca tattgactat tgctcttcag tgctattctt ggcaagtgaa      3720
     acgcacctaa atagattgca aagactacaa aataaawtaa tgagatwcat tttgaactgt      3780
     gacaggtata caccaatatt aaacatgtta gaggcgcttc aatggctttc tgtgaaagag      3840
     cgtatwattt tcaatgtgct gactattatt ttcaaactga ccaatgaact cttgccggaa      3900
     tacttgacga atattatcat acgaggacga aatattcata accatagaac tagacgaagt      3960
     gatgatttac gtgttgtgcc gtttactatg acaagtactc aaaaatcgat ttattataat      4020
     ggaataagaa tttttaatga attaccagtt gaagttagaa atgcaagatg cgtctcagaa      4080
     tttaaaagaa attgtgcaac gtggattaaa aataagtata gataakgaaa atcgtgaatt      4140
     tgtatgtatg attactgtat attattatca aaagataaat aaatggatta ttattattat      4200
     tatta                                                                  4205
//
ID   L2B-3C_AAe  repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-3C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4561
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1408-1408 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97%
CC   identity. The consensus is ~89% identical to L2B-3B_AAE and
CC   ~77%
CC   identical to L2B-3_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..1681
FT                 /product="L2B-3C_AAe_1p"
FT                 /translation="MDGDSYPSAGSFVEVVRRKKRVHETDSVLRSGRVRNK
FT                 SVATSNSNDNRNVSAMAQQVTNAKVSEVNGNGNDSNKKFGCTVRVKPNVTQ
FT                 SNHQTKKEVRSKINPTQVAIKSVRNGMNGSIIVECDNENEAKGFAKIVNEK
FT                 LGDGYAADIEQPKRPRIKIFGVESNYNSNELINILRDQNDIEHVQYLNVLR
FT                 CIPSKRNPENEFTLICEIDAITFERVMRKGKLNIDFERCRVMESIEVFRCF
FT                 KCCGYGHKSSECKNNLHCAKCAERHDVKECSSDQEFCVNCIISNRERKTQF
FT                 DVNHSSWSVDCPIYLRKISISRSYINYNA"
FT   CDS           1685..4486
FT                 /product="L2B-3C_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSKRATDVVLLNIAGITSHFAELEVLVNIKKPKLIML
FT                 TETHLTSDIGINEYSIRNYKMXCCFSVSRHTGGVIMYIHESIKYHVVDNST
FT                 CGLNWFVAIKVVKGLRVGVYGLLYRSPSGNEQQFLAHLEQNWLEKVLDDKG
FT                 MNLIAGDFNINWQQSSDSRNLRSIMEFFDLDQKVKSTTRCTLRSQTIIDLV
FT                 FCNDDRLKVVTAHDSKISDHETIEINFDEFSQPLENYITIKCWKKYSKSAF
FT                 LSLLRNSMPRNSERQLDEKADVLSTVLKENINRLVVVRNIKCNSRKKWYTA
FT                 ELKILQEARDDAYKKASASWDEADWQRYKVLRNEYSYSIRTAKAEFTQKKI
FT                 EQNRGNSKQLWRTLKSLYKSKEKPASRISFNGVDVDEDQVICEKFNSYFVD
FT                 SVQQINESIENVSDCFGNNECQGTHSWNVFNRVSYDALKKAIAKISCSSGI
FT                 DNVNLQVLKDSLEVTGEYLLGIINDSLEQGKFPSGWKQSTVVPIPKVSGTT
FT                 NSEEYRPINMLPIYEKVLEIIVKDQLLEYLNEHKIIINEQSGFRQNHSCES
FT                 ALNLLLYKWKRMIEEKKTIVVLFLDLKRAFETISRPEMLKTLNKYGMGGNV
FT                 LKWFESYLSDRTQVCQYGNCISSPKSVPLGVPQGSVLGPILFILYINDMKK
FT                 AIKHCDINLFADDTVIFIAERDEKVAIRKIRDDIKSLNKWLKVKKLKLNVQ
FT                 KTKSMVISNKKQLDYTELKIHIEGVEVEKVDVFKYLGVIIDQKLTFSAHID
FT                 SVIKKVAKKYGMLIRLKSQLTFWSKIFLYKTLVAPHIDYCSSVLFLASETH
FT                 LKRLQRLQNKFMRYILNCDRYTPIKNMLEVLQWLSVKERIIFNVMTVIFKL
FT                 TNDLLPEYLTNIILRGRNIHDHRTRRSDDLRVVPFTMTSTQKSMYYNGIRI
FT                 FNELPAEIKNARCVTEFKKNCATWVKFKYR"
XX
SQ   Sequence 4561 BP; 1667 A; 636 C; 969 G; 1284 T; 5 other;
     tgtgagtgac tcatgcgtga aataaggtgt taacatcgag tctgaamtta aatacgtttt        60
     taacagtgmt aatcaatttt aatcgcgact atacatgtat cattagacgc gtaagaagat       120
     tccccgtcta acggtacata gtgcgtttta gtgaatatcg gcgttcttag tctacgtcga       180
     aattaatgat ccaaaagtag tgctttcgcg aaagtaacag tgaaatcaat taattgaaca       240
     aagcggccta cggccgtgca aagacaatac atctgaaagt agcggcaaat atgtctgtgc       300
     agtgtgatgt ttgcttcaag gcaattaatg tggcaaagga aagggtgttt tgtttcgggg       360
     gctgcggtca ggtactgcat gctaaatgtg ccgacctaac taatgcaggg aaacggcttt       420
     gcgcgagaat ctatcaatca agtacttgtg ccatgattgt agaaaaaagc aagtgggtct       480
     taacgaagtg ataggcaaat gcgataacat tctcgttgcg ataaatgaga tcaaaactcg       540
     tttggataaa attgaagcga aatttgaacg aaacggttgc gatgaagcag tgaaactatg       600
     tgaacaaaat gtcaagttag tggtggaaga atctgcaaag ttacatggtg aacaattaaa       660
     aaacttggaa acacaaattg cgaattcggc atacagtcct gctgcgggca aaggcccaat       720
     ggatggcgat agttatccat ctgcgggcag ctttgttgaa gtggtgagga ggaagaagcg       780
     agtgcatgaa actgattctg ttttacgctc tgggcgagtt agaaataaga gtgttgctac       840
     ttcaaattcg aacgacaata gaaacgtgag tgcgatggca cagcaagtca ctaatgcaaa       900
     agtgagtgaa gtgaatggga atggaaatga ctccaataag aaatttggat gtacagtgcg       960
     cgtcaaacca aatgtgacac aatcaaatca tcagacgaaa aaagaagtta gaagtaaaat      1020
     taatccaaca caagttgcaa taaaaagtgt tcggaatggc atgaatgggt caataattgt      1080
     tgaatgtgat aatgaaaatg aagccaaagg gtttgcgaag atcgtcaatg agaagttagg      1140
     tgatggctac gcagctgata ttgagcaacc aaagagaccg agaataaaaa tctttggcgt      1200
     ggaaagtaat tacaattcaa atgagttgat taacattttg cgtgatcaga atgatattga      1260
     acatgttcag tacctcaatg ttttaagatg tattccgtcg aaaagaaacc cagagaacga      1320
     attcacactc atatgcgaaa ttgatgcaat tacgtttgag agggtgatgc gtaaaggtaa      1380
     gctcaatatt gattttgaga gatgccgagt tatggaaagc attgaagtat tccggtgttt      1440
     caaatgttgt ggatacggac ataagtcgag tgaatgtaaa aataaccttc attgtgctaa      1500
     gtgtgctgaa agacatgatg ttaaagaatg ttcatcagat caagaatttt gcgttaattg      1560
     tattatttct aacagagaaa gaaaaactca atttgatgtt aatcattcat cgtggagcgt      1620
     agattgtcca atttatttga gaaaaatatc aatttcgaga agctacataa attataatgc      1680
     atagcaatca aaaagagcga cagatgtcgt tcttttaaat attgctggaa ttacstcgca      1740
     tttcgctgaa ttggaagtgt tagtgaatat aaaaaagccc aaacttatta tgttaacsga      1800
     aactcatttg acttcagata ttggaataaa tgaatacagc ataagaaatt ataaaatgwt      1860
     atgttgcttc tctgtatcta ggcacacagg tggcgtgata atgtatattc atgaatcgat      1920
     aaaatatcat gttgttgaca attcaacttg tggactaaat tggttcgttg ccataaaagt      1980
     agtcaaaggg cttagagttg gcgtatacgg cttgttatat cgttcaccaa gtggcaatga      2040
     acaacagttt ctagcacatt tggaacaaaa ctggcttgag aaagtacttg atgacaaagg      2100
     aatgaatctt attgctggtg attttaatat caattggcaa caaagcagcg atagtagaaa      2160
     cctacgcagt ataatggagt tttttgattt agaccaaaaa gtcaagagca caactagatg      2220
     tactttgaga tcacagacca ttattgattt agttttttgt aacgatgata ggctgaaagt      2280
     tgttacggca catgacagta aaatctcaga tcatgaaaca attgaaatta atttcgacga      2340
     attttcacaa ccattagaga attatatcac aattaaatgt tggaagaagt attctaaaag      2400
     tgcatttctt tcactgctga ggaatagtat gcccagaaac agtgaaaggc aattagatga      2460
     aaaagctgat gtgttgagta ctgtgttgaa agagaacata aacaggcttg tagttgtaag      2520
     gaatataaaa tgcaatagca gaaaaaaatg gtacacagct gaattaaaaa tattacaaga      2580
     agcaagagat gacgcgtaca agaaagctag tgctagttgg gacgaagctg attggcagcg      2640
     atacaaagtt ttacggaatg aatattcata ttctataaga acagcaaaag cagaattcac      2700
     acagaaaaaa attgaacaaa atagaggaaa tagcaaacaa ctttggagaa cattgaaatc      2760
     actgtataag agtaaagaga aaccagcaag tcgaataagc tttaatggtg tcgatgttga      2820
     tgaagatcaa gttatttgtg aaaagtttaa cagttatttc gttgacagtg ttcaacaaat      2880
     taatgagagc atagaaaatg tttccgactg ctttgggaac aatgaatgtc aaggaacaca      2940
     cagctggaac gtttttaata gagtctcgta tgacgcattg aaaaaagcta ttgcaaaaat      3000
     tagttgttca tcaggtatcg ataatgtaaa tttacaagtt cttaaggatt cattggaagt      3060
     caccggagag tatctacttg gcataattaa tgattctctt gagcagggca aattccctag      3120
     tggttggaag caatcaacgg tggttccgat accaaaagta tccggaacaa caaattctga      3180
     agaatatagg ccaattaata tgttgccaat atacgagaaa gtattagaaa tcattgtcaa      3240
     agaccaattg ctggagtact tgaacgagca taaaattata ataaacgaac aatcaggatt      3300
     taggcaaaat cattcgtgtg aatcagcttt aaacttatta ttgtacaaat ggaagcgaat      3360
     gattgaagag aaaaaaacta ttgttgttct gtttttagat ctaaagcgtg catttgaaac      3420
     gatatcgcgt ccggaaatgt taaagacttt gaataaatat ggtatgggag gaaatgttct      3480
     caaatggttt gagtcgtatt tatctgaccg aacacaagtg tgtcaatacg gaaattgtat      3540
     atcttcgcca aaatcagtgc cgctcggagt tccacagggt agcgttttag gaccgattct      3600
     atttatttta tatataaatg atatgaagaa agccattaag cattgtgata ttaatttatt      3660
     tgcagacgat acggttatat ttatagcaga gagagatgaa aaggttgcaa ttagaaaaat      3720
     tagagatgat ataaaatcat taaacaagtg gttgaaagtg aaaaagctca aattgaacgt      3780
     ccagaaaact aaatcgatgg ttataagtaa caagaagcaa ttggattaca cagaactgaa      3840
     aattcatatt gaaggagttg aagtagaaaa agtagatgtc tttaaatacc ttggagtcat      3900
     aattgaccag aaattgacat tcagtgcaca tatcgatagc gtaataaaaa aagtagcaaa      3960
     aaagtatggc atgctaattc gtttgaaaag tcaactgacg ttttggagca aaatattttt      4020
     gtataaaaca ttagtggcac cacatattga ctattgctct tcagtgttat tcttagcaag      4080
     tgaaactcac ctaaaacgat tgcaaagatt gcaaaataaa ttcatgagat acattttgaa      4140
     ctgcgacaga tatacaccaa ttaaaaacat gttagaggtg ctacaatggc tttctgtgaa      4200
     agagcgtatt attttcaatg tgatgactgt gatttttaaa ctgacaaatg atctcttgcc      4260
     ggaatacttg acaaatatta ttttacgagg acgaaacatt catgaccata gaactagacg      4320
     aagtgatgat ttacgtgttg tgccgtttac aatgactagt actcaaaaat ctatgtatta      4380
     taatggaata agaattttta atgaattacc agctgaaatc aaaaatgcaa gatgcgtcac      4440
     agaattcaaa aaaaactgcg caacgtgggt taaatttaag tatagataag gaaaatcata      4500
     aaattgtatg tatgaattac tgtatattat tatcagaaga taaataaatg gattattatt      4560
     a                                                                      4561
//
ID   L2B-3_AAe   repbase;    DNA;    INV; 4581 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L2B clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2_Ele7;
KW   L2B-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4581
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4581
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele7.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 20 sequences with >95% identity, and ~97%
CC   identical to the original sequence in [1]. It is closely related
CC   to CR1-1_AG and L2B-1_CP, and belongs to the L2B clade. Thus
CC   renamed.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..1682
FT                 /product="L2B-3_AAe_1p"
FT                 /translation="MSVQCDVCCKAISAAKERVFCFGGCGQVLHAKCADLT
FT                 SAGETALRENLSIKYMCHDCRKKQVSLNDMVGKCDSILNAINEIKNRLEKI
FT                 EAKLERNGCDEAVKQCEQNVKMVVEESAKLHGEQLKILESQIAISANSPAI
FT                 GKGQAEGDEYPSGGSFVEVVRRKKNKRDTGSVLRSGRVRNRSVATPDKNEN
FT                 TSRSAKAQPISNANVKEVELSVSNKKFGCKVRVKPIATQSNHQTKKDVRNI
FT                 INPTQMGIKSVRNGVNGSIIVECGNEDEAEGFVKMINEKLSNGYSVDIEQP
FT                 KRPRIKILGAXGNYDSNELIDIFRDQNDIEDVEFLKVLKCIPTKNNPENKC
FT                 SLICEVDANTFERVVRKGKLNIDFERCRVLESIDIFRCFKCCGYGHKSGEC
FT                 KNNLHCAKCADRHDVKDCSSDKEFCVNCINSNRERKTQFDVNHSAWSVDCP
FT                 IYLKKVTISKSFINYNA"
FT   CDS           1686..4487
FT                 /product="L2B-3_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSRRATDVVLLNIAGITSHFNELEIIVSRQKPKIVML
FT                 TETHLTSDIGISEYAIKNYHMICCHSASRHTGGVVMYIHEQVKFHVVDNST
FT                 CGSNWFIAIKVVKGLKVGVYGVLYHSPSANQQEFLLHLEQIWLERVIDDKV
FT                 INLIGGDFNINWKNVSDKRKLQNLMQCFNLNQKVNDITRRTIRSQTIIDLV
FT                 FCNDDELNVTINQGNKISDHETIQIQFNECSEPVEDYITFKCWKKYSKAAL
FT                 ISLLRRSMSDNSERELDEKADILSTLLKENINKLVVIKSIKCNSRKKWYTI
FT                 ELKSLQLARDDAYRKASTSWDEADWRQYKVLRNEYAYSIRKAKAEFTQRKI
FT                 EQNRGNSKQLWKTLKSLWKSREKPPIRLTFDGEVVENDHEICERFNSYFVD
FT                 SIQQINSSIEDVPNCFEDESDHFAETWNVFHRISYDVLCRSIHKIGSSSGI
FT                 DNVNLQVLKDSLEVTGEYLLGIINESLEQGNFPRSWKQSTVVPIPKVSGTT
FT                 KAEEHRPINMLPIYEKVLEIIVKDQLLEYLNEQKILISEQSGFRQNHSCES
FT                 ALNLLLYKWKRMIEEKKTIIVLFLDLKRAFETISRPEMLKVLKKYGIGGQV
FT                 LKWFESYLSSRTQICQYRNSTSVPKSVPFGVPQGSVLGPILFILYINDMKK
FT                 AIKHCDINLFADDTVVFIAEKNEKTAIRKMRDDVELLSKWLKIKKLKLNVE
FT                 KTKCMIISNKKQLNYTELKMDIEGIEVERVNVFKYLGVYIDDKLKFKEHID
FT                 NVIKKVARKYGMLVRLGSQLTFWSKIFLYKTLVAPHIDYCSSVLFLASDTH
FT                 LSRLQRLQNKFMRYILNCSKYTPILGMLEALQWLSVKERIVFNVLTIIFKL
FT                 TNNQMPEYLTNIIERGRNIHTHQTRRNYDLRVVPFTMTSTQKSIYYRGIRI
FT                 FNELPNEIKHAQSIAEFKRKCSNWIKNRYR"
XX
SQ   Sequence 4581 BP; 1682 A; 616 C; 972 G; 1308 T; 3 other;
     attcgtttgt caaagcatgt gtgaacaagg tgtgaatatc gagctctaca ataaaaacat        60
     ttttttactg ttttaatcag ttctattcgc gacaattgtg atatcattag aagcgtaata       120
     agattttcta tccaacggtg tattgcgtgt tcttaggaac gttgctatat taatgttata       180
     gtgcaattaa aatttgcaac atagtgctat ttccaaacgg ggatcagtga aagcaataaa       240
     tttacaaagc ggcctacggc cgtgcgaaaa caatacacgc ctaagcggtg acaaaaatgt       300
     cggtgcagtg cgacgtttgc tgtaaggcaa ttagtgcggc gaaagaaaga gtgttttgct       360
     ttggtggttg cggtcaagtg ctacatgcaa aatgcgccga tttgactagt gcgggagaaa       420
     ctgctttgcg tgaaaactta tcaattaagt atatgtgcca cgactgcagg aaaaagcaag       480
     taagccttaa tgatatggtg ggcaagtgtg acagtatact caatgcgata aatgagataa       540
     aaaatcgttt agaaaagatt gaagcaaagc tggaaagaaa tggttgtgat gaagctgtga       600
     agcaatgtga gcaaaatgtg aaaatggtag tggaagagtc tgcaaaattg catggagagc       660
     aattaaaaat cttggaatca caaattgcga tttcagccaa cagtcctgct ataggcaaag       720
     gccaagcaga gggggatgaa tacccatctg gtggcagctt tgttgaggta gtsagaagaa       780
     agaagaataa gcgtgatact ggctctgttt tgcgttctgg tcgtgtccga aatagaagtg       840
     tcgcaacacc agataaaaat gagaacacaa gtagaagtgc gaaggcacaa cctataagca       900
     atgcgaatgt gaaagaggtg gaactgagcg tttccaataa gaaattcgga tgtaaagtgc       960
     gggttaagcc wattgcgaca cagtcaaatc atcaaacaaa aaaagatgtg aggaacataa      1020
     tcaatcctac ccaaatggga attaaaagtg tgcgaaatgg tgtgaatggt tcaataattg      1080
     ttgaatgtgg aaatgaagat gaagccgaag ggtttgtaaa aatgatcaat gaaaagctaa      1140
     gtaatggtta ttcagttgat attgagcagc ctaagagacc aaggatcaaa attcttggtg      1200
     cggawggtaa ctacgattca aatgaattga tcgacatttt tagagatcag aatgatattg      1260
     aagatgttga gtttttgaaa gtactaaaat gcattcccac gaagaataac cccgagaata      1320
     aatgttctct tatctgcgaa gttgatgcaa atacgtttga gcgcgtggtg cgtaaaggta      1380
     agctaaatat tgatttcgag agatgtcgag ttctagaaag tattgatata ttcagatgct      1440
     tcaaatgttg cggctatggg cataaatctg gtgaatgcaa aaataattta cattgtgcta      1500
     aatgtgcaga cagacatgat gtaaaggact gttcatctga taaagaattt tgtgttaatt      1560
     gcatcaattc gaatagagaa agaaaaacgc agtttgacgt taatcattcg gcatggagtg      1620
     tggattgtcc catttattta aaaaaagtaa cgatctcaaa gagttttata aattataatg      1680
     catagcaatc aagaagagcg acggatgttg ttcttctgaa cattgctggc attacgtcgc      1740
     atttcaatga gttagaaatt atagtcagca ggcaaaaacc caaaattgtt atgctaacag      1800
     aaactcattt aacttcagac attggaataa gtgagtatgc tataaagaac tatcatatga      1860
     tatgttgcca ctctgcctcc aggcatacag gtggggtggt tatgtatatc catgagcaag      1920
     taaaatttca tgtagttgac aattcaacat gtggatcaaa ttggttcatt gctataaaag      1980
     tagtcaaagg gctaaaagtt ggagtttatg gtgtattgta tcattcacca agtgcaaatc      2040
     agcaagaatt tttactgcat ttggagcaaa tttggcttga aagagtaatt gatgacaaag      2100
     taataaacct aatcggtgga gactttaata tcaactggaa gaacgtcagc gataaaagaa      2160
     aacttcaaaa tctaatgcag tgttttaatc taaatcaaaa agtgaatgat atcacgcgtc      2220
     gtactattag atcacagact atcatcgatt tagtattttg taacgatgat gaattgaacg      2280
     tgacgattaa tcaaggaaat aaaatttccg atcatgaaac tattcagata caatttaatg      2340
     aatgttcaga acctgtagaa gattatataa ctttcaaatg ttggaaaaaa tattcaaaag      2400
     ccgcacttat atctctgttg agaagaagca tgtctgacaa tagtgaaaga gaattagatg      2460
     aaaaagcaga tattttgagc actttgttga aagagaacat aaataagctt gttgttatca      2520
     aaagcataaa atgcaacagt agaaaaaaat ggtatacaat agagttgaaa agtttgcaac      2580
     ttgcaagaga cgatgcgtat agaaaagcta gtactagttg ggatgaagct gattggcgtc      2640
     agtacaaagt tttaagaaat gagtatgcat actctatcag aaaagctaaa gcagaattca      2700
     ctcaaaggaa aattgaacaa aatagaggaa atagcaagca attatggaaa accctaaagt      2760
     cgttatggaa gagtagagaa aaaccaccaa tcaggttgac atttgatgga gaggttgtag      2820
     aaaacgatca tgaaatatgt gaaaggttta atagttattt tgtggatagc attcagcaaa      2880
     ttaacagcag tattgaagat gttccgaact gctttgaaga tgagagcgat cattttgctg      2940
     aaacatggaa tgtgttccat cgtatttcat atgatgtgtt gtgtagatct attcacaaaa      3000
     ttggtagttc atcaggcatc gacaatgtaa atttacaagt gctaaaagat tcattagaag      3060
     ttaccggaga atatttgctt ggaataatta atgagtctct agaacaggga aatttcccta      3120
     ggagttggaa acaatcaacg gtggtaccaa taccaaaagt gtctggaaca acgaaagctg      3180
     aagaacatag acctataaat atgctaccaa tttacgagaa agtgttagaa attatagtta      3240
     aagatcaatt acttgagtat ttaaatgagc aaaagatatt aataagtgaa caatctggat      3300
     ttagacagaa ccattcgtgt gaatctgctt tgaacttact tttgtataaa tggaaacgaa      3360
     tgatagagga aaagaaaacg attattgttt tatttttgga cctcaaacgg gcattcgaaa      3420
     ctatatcacg cccagaaatg ttaaaagttt tgaaaaaata tggcatagga ggacaggttc      3480
     tcaaatggtt cgaatcatat ctatccagtc gcacacaaat ttgtcagtat agaaactcta      3540
     cttcagttcc aaaatcagtg ccgtttggtg ttcctcaggg aagcgtttta ggaccgattt      3600
     tatttatttt atacatcaac gatatgaaga aagctataaa gcattgtgac ataaatttat      3660
     tcgcagacga taccgttgta ttcattgcag agaagaacga gaaaacggca attagaaaaa      3720
     tgagggatga cgtggaattg ttgagcaagt ggttgaaaat taaaaagcta aaattgaatg      3780
     tggaaaaaac taaatgcatg attataagta acaaaaaaca attaaattat actgagctaa      3840
     aaatggacat tgagggaatt gaagttgaga gagtgaatgt ttttaaatac ctaggggttt      3900
     atattgatga taaattaaag ttcaaagagc acatagataa tgtaattaaa aaagtagcaa      3960
     gaaaatatgg catgctagtt agattaggta gtcaattgac gttttggagt aagatattct      4020
     tgtataaaac attggtggcg ccgcatatcg attattgctc ttcagttttg tttttagcca      4080
     gtgatacgca tttgagtagg ttgcagaggt tacaaaacaa attcatgcgg tatatattga      4140
     attgcagcaa atacacgccc atattaggaa tgttggaagc tttgcagtgg ctttcagtga      4200
     aagaacgcat tgttttcaat gtattgacaa ttattttcaa attaactaat aaccaaatgc      4260
     cagaatactt gacaaatatt attgaacgag gacgaaatat tcatacgcat caaactagac      4320
     gaaattatga tctacgtgtt gtgccgttta ctatgacaag tacacaaaaa tcaatatact      4380
     atagaggaat aagaattttt aatgaattgc caaatgaaat taaacatgca caaagtatcg      4440
     ctgaatttaa aaggaaatgt tcaaattgga ttaaaaatag atatagataa taagatgatg      4500
     ttttgtactc cgtattttta tttgtaaatt gtaattatca aaagataaat aaatgaacta      4560
     ttattattat tattattatt a                                                4581
//
ID   L2B-3_CQ    repbase;    DNA;    INV; 4148 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4148
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 144-144 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..895
FT                 /product="L2B-3_CQ_1p"
FT                 /translation="AAGKRKAEDRAEDVEETGIGFVTPKTSFAEALRKRVK
FT                 VTEEEVKKKQARKPDPVVVIKPKEGVQVEDARAEVQKKISAKNLNVQRVTS
FT                 SKNGSVIVELKDEASVGVLKASVDAQLGGRFEARLRESMKPSIKIIGMSDE
FT                 FSEEELRASLVEQNDVFANLKHFKLRKTFQIEKWRFNNHAAFVELDAETFF
FT                 KVLEQGKVNCGWNRCRVFDGLQVTRCYKCNGYGHKGADCKAETLVCPICSE
FT                 DHEWKDCNAETEKCANCEKLRVQRKLNIDVNHSAWSSECPVFIKEQEKRNK
FT                 MVDFTI"
FT   CDS           899..3718
FT                 /product="L2B-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QPKQCGEILYLNIAGIKSHLDELKLMMQNTKPKIVFL
FT                 TETHLTEKHDLDEFEIQNYRCSCCLSRSAHTGGVMVYVDDRLEYEIVSNTV
FT                 AGDNWFLAIDVKSTTLNGIYGGIYHSPSSSDAGFIDSFESWLRTVFQDCRT
FT                 NLLVGDFNIRWNEPGYARELKNVTEALGMKQIVSEPTRVGPSSSTIIDLVF
FT                 TNLEGVEARVTEELKITDHETICIHVGETTINLPEQKKSYVSWKRYTKERL
FT                 QAALRAKLRRADAGVTVGEAAQTFGSTLATAVAELTDLCSNDRKVSNAWYG
FT                 EQLRNLKTERDDAYRTFKHTKRLDDWNLYKVLRNRYVRGLRSSKNLAVEEE
FT                 IRSCHGNPKKLWRSLKSLIRPGGEPPMEIVFEGARSERETAERLNQFFVKS
FT                 VETIHRNIPPAQVEPAVVPAEVRVNEDGSEDLLTELQPITLTKLKETVYSL
FT                 KDCAGVDSVTKRVMTDSFDVVGEQLLAIVNRSLESGEFPQPWKRTLVIPIP
FT                 KVPKSTRPEDHRPINILPLYEKVLETIVKEQLLAFVDRTKVLLEEQSGFRK
FT                 HHSCESALNLLLLKWKQAIEEGKIVLSVFVDLKRAFETIDRTKLKAVLRRY
FT                 GVRGSALKWFSSYLDSRTQVTRYNGSTSAATAVDLGVPQGSVLGPLLFILY
FT                 INDLKQALRRVQVNLFADDTVLFLTGTSFEECFNVMNTELASFTEWLRWKK
FT                 LQLNVSKTKCMIVTTRPSDGVSRAVRIDGEEIERVETIKYLGVMLDEKLNF
FT                 NDHIDYTIRKAARKFGVLCRINRYLTTEAKIDVYKSLIAPHFDYCASILFL
FT                 ATRQQLKRMQVLQSKVMRLILXCDRLTPRQNMLDCLQWMSVRQRIEYNTLI
FT                 FVFRVTKGMAPKYLTGTVVYGRDIHQHDTRGADNLRLQMCRKACTQNSLFY
FT                 KGYSMYNQLPEAAKNTRNINEFKNLCKNFVRQRPME"
XX
SQ   Sequence 4148 BP; 1301 A; 855 C; 1107 G; 882 T; 3 other;
     agcagcaggc aagcggaaag cggaagacag ggcagaggat gttgaggaaa ccggaatagg        60
     atttgtgacg ccgaaaacaa gctttgctga agcgcttcga aagcgggtga aagtcacgga       120
     ggaggaggtc aaaaagaaac aggcaagaaa accagatcca gtcgttgtca tcaagccaaa       180
     agaaggggta caggtggaag acgcgcgagc agaggtgcag aagaaaatca gcgccaagaa       240
     cttgaatgtt caacgcgtca ccagcagcaa aaatggttca gttatcgtcg agctgaagga       300
     tgaagcgtca gtcggagtgc taaaagcaag cgtggatgct cagctaggag gtcgatttga       360
     ggctcgctta cgggaaagca tgaagccgtc gatcaaaatc atcggaatga gtgacgagtt       420
     tagtgaagag gagctgagag cgtcgttggt ggagcagaat gacgtctttg cgaacctgaa       480
     acacttcaag ttgcgcaaaa ctttccagat cgagaagtgg cgctttaaca accatgctgc       540
     attcgttgag cttgacgcgg agacattctt caaagttttg gagcagggaa aagttaactg       600
     tggttggaat cggtgtcgtg ttttcgacgg gcttcaagtg acaaggtgct acaaatgcaa       660
     cggatacggc cataagggag cggactgcaa ggccgagact ttagtgtgcc caatctgcag       720
     tgaagaccac gaatggaagg actgtaacgc tgaaacagag aagtgtgcca actgcgagaa       780
     actacgcgtg caacgcaaac tcaacattga tgtcaaccac tcggcttgga gcagcgaatg       840
     tccagtattc atcaaagagc aggaaaaacg gaacaaaatg gtggatttca caatctagca       900
     accaaaacaa tgcggagaaa tactgtacct gaacattgct ggaataaaat cacatcttga       960
     cgagctgaaa ctgatgatgc agaacacaaa acctaaaata gtatttttga cggaaacaca      1020
     cttgacagaa aagcacgacc tagacgaatt tgagatccag aattaccgwt gcagttgctg      1080
     tctgtccaga tcagcacaca cgggtggggt gatggtgtat gtagacgacc gcttggagta      1140
     tgagattgtc tcgaatacgg tggcaggaga taactggttc ttggcgatcg acgtgaaaag      1200
     tacaacgctc aatggaatct atggaggaat ctaccattct cccagcagca gtgacgctgg      1260
     tttcatagac agctttgaga gttggctgag gacggtcttc caggactgca ggacaaatct      1320
     actcgttggc gacttcaaca tccgatggaa cgaaccggga tacgcacgtg agctgaagaa      1380
     cgttaccgaa gccttaggga tgaagcagat agtatcagaa ccgacgcgtg tgggtcccag      1440
     tagcagtaca attattgacc ttgtctttac aaacctggag ggggtggagg cgcgcgtcac      1500
     tgaagagctt aagataactg atcacgagac catctgtatt cacgtcggag aaaccacgat      1560
     taacctaccg gagcagaaaa agagttacgt tagctggaaa cggtatacaa aggaacgact      1620
     gcaagctgcg ctacgagcaa aactgaggag agctgacgct ggagtgaccg ttggagaagc      1680
     tgcacaaact tttggctcaa cactggcgac ggcggttgcg gagctgaccg atctatgcag      1740
     caatgaccgg aaagtctcaa acgcgtggta tggagagcag ctgagaaacc tgaaaaccga      1800
     gcgggatgat gcctacagga ccttcaaaca tacaaaaagg ctggatgatt ggaaccttta      1860
     caaagtgctt cgaaaccgct acgtccgagg attgagatca tcaaagaacc tggcagtaga      1920
     agaggaaatt cgaagttgtc acggaaatcc caagaagctt tggagaagcc tgaaatcgct      1980
     gattcggcct ggtggagaac ctccaatgga aattgttttc gagggagcgc gaagcgaaag      2040
     ggaaacggcg gaacgcttga atcagttctt cgtgaaaagt gtagagacaa tccatagaaa      2100
     catcccacca gcccaggtgg aaccagcagt agtaccagca gaagtaaggg taaacgaaga      2160
     tggcagcgag gacttattaa cggagcttca accaatcacc ttgacgaaac tgaaagaaac      2220
     agtctactcg ttaaaagact gcgctggtgt tgatagcgtg acwaaacggg tcatgacgga      2280
     ttcatttgac gttgttggag agcagctgtt ggcgattgtc aacagatccc tggaaagcgg      2340
     agaattccca caaccttgga agcggacttt ggtgataccg atacctaagg taccgaaatc      2400
     gacgcgcccg gaagatcaca gaccaatcaa catcttgcca ctctatgaaa aggttttgga      2460
     aactatagta aaggagcagc tcctggcgtt tgtggatcgg acgaaagttt tactcgaaga      2520
     gcagtctggt ttccgaaagc atcactcctg tgagtcagcg ctcaacctgt tactgctgaa      2580
     atggaaacaa gcaattgaag aagggaaaat tgtcctatcg gtgttcgtag acctgaagcg      2640
     agctttcgag accattgacc gaaccaaact gaaagcagta ctgcgtcgct acggtgttcg      2700
     cggttcagcg ctcaaatggt ttagcagcta cttggacagc agaacgcagg tgactcgtta      2760
     caacggctcc acgtcagcag ccacggcagt agatcttgga gttcctcaag gcagtgtgct      2820
     tggaccgctt ctctttattt tatatatcaa cgacctgaag caagcactga gacgagttca      2880
     agtaaacctt ttcgctgatg atactgtact gtttctgacc ggaactagct ttgaagagtg      2940
     ctttaacgtg atgaatactg agcttgccag ttttaccgaa tggctgagat ggaagaaact      3000
     acagctgaat gtcagcaaaa caaaatgcat gatagtgacc acacgaccaa gcgacggcgt      3060
     aagcagagcg gttcggatag atggcgagga aatcgagagg gtcgagacga tcaaatacct      3120
     cggagtgatg ctggacgaaa aattgaactt taatgaccac attgactaca caatacggaa      3180
     agcagcccga aaatttggag tactctgcag aattaaccgt tacctgacga ctgaagccaa      3240
     aatagacgtg tacaaatccc tgattgctcc tcacttcgac tactgtgcct ctatcctgtt      3300
     tttagcaact cgtcaacaac tgaaaagaat gcaggtcctg cagagcaaag tgatgcgact      3360
     aattttgmaa tgtgatcgtt taacaccaag gcaaaacatg ctggattgtt tacaatggat      3420
     gtctgttcgt caaaggatcg agtacaatac gttaattttt gtgtttcgtg taactaaagg      3480
     gatggcgccc aaatacttga caggtacggt ggtatacggg agggatatcc atcagcacga      3540
     caccagagga gctgacaatc tcagattgca gatgtgcagg aaggcgtgta cgcagaattc      3600
     actgttctac aaaggataca gcatgtacaa ccagctaccg gaagcagcaa agaacacaag      3660
     gaacatcaac gagttcaaaa acttgtgtaa gaatttcgtg cgtcaacgac cgatggagta      3720
     aaagtgaacc acgactgtac tgtgaggaag agcatgttat gacggccggc catcttcatt      3780
     atcggtacat gtcgcatggg atcactttgg gcctcatatg atgtaagctt gatcaaaagt      3840
     aacgcgaatc tgggcgcggt tttaacccta tgtgctcata tgtgtgtggg atagcaaatg      3900
     atctcaatac cctaaatgga agctgcaatc tgagtgaaag acaaaaggac tctacacagg      3960
     attttgtaag agcgccttga gatgaagtaa gagaggaacg gatgggcata cacggaagta      4020
     gagttagatc aaaggacact ctcaataata gacgatagaa ttatcgaaag atatctgctc      4080
     gtaatccttc catgctacaa aaactgtgta tgggtaagag gtgggccatc caaggaaaaa      4140
     aaaaaaaa                                                               4148
//
ID   L2B-3_PBa   repbase;    DNA;    INV; 3753 BP.
XX
AC   .
XX
DT   28-OCT-2013 (Rel. 19.03, Created)
DT   28-OCT-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3753
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 750-750 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..969
FT                 /product="L2B-3_PBa_1p"
FT                 /translation="MDDEYAEYRCSACRKAIKSRVVKCKNCPKLFYHPGCV
FT                 SKHKIIDRNQEYVPCKGPFEEFLTDSEKAPAPAGRDRTSSTGSTGSTGVFT
FT                 TSSSGNKGSSIDIKIDWIIRTVKEIKDEAMRKNEIKIMIKEVVQEELGSVK
FT                 QEMENLKKIIQGIEYGSKGGTQRSYSEAVKEKKKESLIIVKPKXQQESEDT
FT                 KKVIKEKVDIKNMAMGVTKLKKGKQRSSNHGM"
FT   CDS           1687..3750
FT                 /product="L2B-3_PBa_2p"
FT                 /translation="MKKINPAFLALSETRLTEDIEDSEVNVSGYNMTRCNA
FT                 ENRNTGGVVLYVRNDIIYETVLVQKLESNCWCVAVEVKDKLYKGVIMVIYH
FT                 SPSASHGDFMRFFEDIVEELVIKGECMVIGDFNIDLMTDSFYAKKLQTAML
FT                 SLGMKQYVNEPTRITKDSQTIIDLIFANSNKRVQVIHEPKITDHAWLEVEL
FT                 SVNKIESKXREFSARNYKEFDEGEFVMLVKNKLQESQGWQCVCMGVSERAE
FT                 KFVNSIVNALDVMAPKRKIRIPKVWEGKKWFSDVIREAADKRDEAFRQAVY
FT                 ADTEQSWLQFKVNRNAVVKLIRTKKKEYYENMIDFNKDNPSTMWKTLKEII
FT                 RGEPVCAKEIKDIDFEILDNIDYSTIGCNIADKFNLYYIQSINSIIKSIIE
FT                 DQSTGAGKRIIYAIENMVTMENFEGITVEHLEKIIKGLPNKKGTEEGITSN
FT                 ILKATFCVIKEEFVDIINNSLRDGCCPESWKTSTIIPIPKVDKAKKASDFR
FT                 PINVLPIFEKVLELVVKEQIERYLENNXIITEHQSGFRKHYSCETAIQTIV
FT                 DEWKLIVSERRMVGVIFMDLKRAFETIDRERLLGKLYRYGIRGKVLEWLNS
FT                 YLKNRTQQVRFNNKWSKLMATEYGVPQGSVLGPLLFILYINDIIKVCPEEC
FT                 KIKMFADDTLIYVEGESSAELERKMNTVFVIVEKWMNIN"
XX
SQ   Sequence 3753 BP; 1485 A; 418 C; 916 G; 928 T; 6 other;
     gatgtgaaga cgtgtgtcac atcgctccgt caaaatagtg aattttcgtg cgtaaatagt        60
     gggaaaagac gtaaaataag tatttcgagt tatgtcgccg tagatcgagg atggatatga       120
     aagttatcta gccgggatac ggcgatctgt ggatgtgagc agtgaattta ttatttgaga       180
     cattgaagtc tcacaagaca gtagacatta tacgtggaca caatagtgct gacgtgtgaa       240
     agtgggtcac aggtgactga tcgcttatgc tgatactagc ggttttggcc ggtaattatc       300
     agcatggacg acgaatatgc agagtatcga tgctcggcat gtaggaaggc aattaagagc       360
     agagtcgtta aatgtaaaaa ttgcccgaag cttttttacc atccaggatg tgtaagtaag       420
     cataaaatta tcgacagaaa tcaagagtac gtgccgtgta aaggcccatt tgaggaattt       480
     ttaactgata gtgagaaagc tccggcaccg gcagggagag ataggacatc atctacagga       540
     tctacaggat ctacaggagt gttcacaaca tcgagcagtg gaaataaagg gtcaagcatt       600
     gatataaaaa tagactggat tataagaacc gtgaaagaaa taaaagatga agcgatgcgt       660
     aaaaatgaaa ttaaaataat gattaaagaa gtagttcaag aagaattagg aagtgttaaa       720
     caagagatgg agaacttgaa gaaaataata cagggaatag agtatggatc gaagggagga       780
     acgcaaagaa gctacagtga agcggttaaa gaaaagaaga aagagagtct tataattgtt       840
     aaaccgaaan tgcaacagga aagtgaagac acgaaaaaag tgataaaaga gaaggtagat       900
     ataaagaata tggcaatggg agtaacaaaa ttaaaaaaag gaaagcaaag gagtagtaat       960
     catgggatgt gaaactggag aggaggtaaa aaagttgaaa gagacagttc aagctaaact      1020
     gggagagaat tacaaagtga cggagtctaa atcgaaacca aaaataaaaa ttattaatat      1080
     aaatttagaa gagatgaact tagatgataa tgagcttata aatacgataa agaagcagaa      1140
     taaaatagac acagtaaata tgcgaattgt gaagagaatg gtcaaagtaa agaataatga      1200
     nnaaagaaga ggaaatgaag aaggatcaat aataatggaa gtagatgaag agacacacga      1260
     gatgatattg cagagaacaa aactaaatag taggatggaa gaagtgtcct gcatttaatc      1320
     acatcagtgt caaaagatgt tttaagtgct ggggatattt tcatattgcg gaaaattgta      1380
     agagagaaga aacatgctgc aaatgcgcgg ggaatcatgc agcaaaatca tagctcgcgt      1440
     gtctgtacag cgacagagaa gaaatgtgtg aactgtatgt tcaaaaatcg aacatacaat      1500
     ttgaagataa atgatgacca tgaagctatc agccgagaat gtccgacttt taagagggcg      1560
     ttacaggaag agaagaggag agcaggctgg gaggagaagt agcaactaca gaagaaagaa      1620
     gaaattatac tgtatacaaa tgcgcagagt ttgatagcgc ataaggatga gattcaacat      1680
     cagattatga agaaaataaa tcctgcgttc ttagcattat cggagaccag attgaccgag      1740
     gatattgaag acagtgaagt gaacgtttct ggttataata tgactagatg taatgctgag      1800
     aatagaaata caggaggcgt tgttctatat gtaaggaatg atattattta cgagacggtg      1860
     ttagtacaaa aattagaatc gaattgttgg tgtgtcgcgg tagaagtgaa agataaatta      1920
     tataaaggag tgataatggt aatatatcac tcaccaagcg catcgcacgg ggatttcatg      1980
     agatttttcg aggatatagt agaggagtta gtaataaagg gtgaatgcat ggtaatagga      2040
     gattttaata tagatcttat gacggactcg ttttatgcga agaaattgca aacggcaatg      2100
     ttaagcttgg gtatgaaaca gtatgttaac gaaccgacga gaatcacgaa agatagtcaa      2160
     acaattatag atctaatctt cgctaatagt aataaaagag tgcaagtaat tcatgaaccc      2220
     aaaattacgg accacgcgtg gctggaagtt gagttgagtg tgaataaaat tgaaagtaaa      2280
     tntagagagt ttagcgctag gaattacaaa gagtttgatg aaggtgaatt tgttatgtta      2340
     gtaaaaaata aattacagga aagccaggga tggcagtgtg tatgtatggg tgtgagtgag      2400
     agagcagaaa aatttgtcaa tagtatagta aatgcgttag atgtaatggc accgaagagg      2460
     aaaattagaa ttccgaaagt atgggaaggg aaaaaatggt tctcagatgt aataagagag      2520
     gctgcggata aaagggatga ggcatttagg caagcagtgt acgccgatac agaacaaagc      2580
     tggttgcaat ttaaagttaa taggaatgca gtagtaaaac taatcaggac gaaaaagaaa      2640
     gaatattatg aaaatatgat agattttaat aaggataatc cttcgactat gtggaaaact      2700
     ttaaaagaaa ttattagagg cgagccagta tgtgctaaag aaataaaaga tatagatttt      2760
     gaaatattag ataacataga ttatagtaca atagggtgca atatagcgga taaatttaac      2820
     ttatattata tacagagtat taatagtata ataaaatcta taatagagga tcagtctaca      2880
     ggcgcaggta aaagaattat ctatgctata gaaaatatgg taactatgga aaattttgag      2940
     ggaatcacgg tagagcattt agagaaaatt attaaaggac tgccaaataa gaaaggcacg      3000
     gaagagggaa taactagtaa tatattaaaa gcaacgtttt gcgtaataaa agaggaattt      3060
     gttgatataa taaataactc cctgagagat ggttgctgtc cagaaagttg gaaaacgtcc      3120
     acaataatac cgattccaaa agtagataaa gccaagaagg cgagtgattt taggcctatt      3180
     aatgtgttac ctatatttga gaaagtgtta gaattggtag taaaagagca aattgaaagg      3240
     tatttggaaa ataatagnat tataactgaa catcaatcgg gctttagaaa acactattca      3300
     tgtgaaacag cgattcagac tattgttgac gaatggaaac tgatagtcag tgaaaggaga      3360
     atggtagggg taattttcat ggatctgaag cgagcgtttg aaacgataga tagggaaaga      3420
     ttattaggga aattatatcg atatggaatc agaggaaaag tccttgaatg gttaaactca      3480
     tatctaaaga atagaacaca gcaggtgcga tttaataata aatggtcaaa attaatggca      3540
     acggaatatg gagttccaca gggatctgta ttgggacctt tgttatttat actttatata      3600
     aacgatataa tcaaagtctg tccagaagaa tgtaagataa aaatgtttgc ggatgatact      3660
     ttaatatatg tggagggaga aagtagcgcn gaattagaaa gaaaaatgaa tacggtgttt      3720
     gttatagtag aaaagtggat gaatataaat aaa                                   3753
//
ID   L2B-4B_AAe  repbase;    DNA;    INV; 5210 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L2B clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2_Ele5;
KW   L2B-4B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5210
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5210
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as L2_Ele5.
CC   [2] Consensus update. ~96% identical to consensus. The consensus
CC   is ~99% identical to the original sequence in [1] and ~80%
CC   identical to L2B-4_AAe. It belongs to the L2B clade and renamed.
XX
FH   Key           Location/Qualifiers
FT   CDS           305..1720
FT                 /product="L2B-4B_AAe_1p"
FT                 /translation="MTECKQCGAPVLISEIPTTCTGCLSVYHYKCTPLTKA
FT                 VAKLVSENENLLFKCSDCLSSQCCGEQNLTLPTVRMFEEEMKKISSISDSF
FT                 GGVREQIAAQINDALKTGMEELVRSLNSTMDKAIFEMSKSVSKELESMKCS
FT                 FFEFNSNNNLVAMNDKHGTSSTASEPSLLPRGKKRKVQEDVCAMSDDVFVE
FT                 SISFADVVKSNAGIKIRNKSTKKKSTANDVMQVTRKARPVIVIKPKESNQS
FT                 SEDTRKILINKLDPKKHKISNLRHGKDGSIIAECATGYNVNVVKDGIQSDL
FT                 GENYNAVVPSSVPRLLVKGMSDQFSSDEFIRILKDQNEDIAINEVKVIRMY
FT                 ENPHFKYKKYNVVIEVDKETHSCLLTAQQVYVKFDRCRVVPEISVLRCFKC
FT                 GEFGHMSTNCKNCDACCRCSGSHKTSECTSTVLKCINCIKMNKERKMNLDV
FT                 NHGAFSYECEVFKNLYQRKKSSLHFNE"
FT   CDS           1724..4534
FT                 /product="L2B-4B_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QPSSSSNVNQFDILYLNIAGLSTNYVELRQIVEEKRP
FT                 YLVFLSETHIVDIDAFDQYSIPGYNVAACLSHSRHTGGVAIYVKESVQYRL
FT                 QLNEVCEGNWFLGIAVDRGMKMGNYGVLYHSPSSSDQRFIEILENWLEMFV
FT                 DCSKLNVLAGDFNINWCDNSNSNHLKRLADFFNLKQKVNVYTRISRHSQTL
FT                 IDHVYTNLDSVSVIKNSDLKVTDHETLVINIDDNSRNKSDFVKLKCWKKYS
FT                 KHAVSSLVERNVDFHTNDGSLDQKSAVLTDVLKTCTNKLVEHKFVSLKNSN
FT                 SWYNLDLLRCKRNRDKLYKKWRRNNNNTNWNRYKVARNKYSQMVKQTRCEY
FT                 IQRKIDQHQNNSKELWKILKSLLKPSNCKPRSITFNGTLEESEQVIACKFN
FT                 EYFVDSVSSINQSIELVDEPDEIKQPINNNCTFECFHPITLEDLRNICFSM
FT                 GKTAGVDNVNARVIQDCFDVIGHNLLDLINESLQTGHVPQVWKESLVIPIQ
FT                 KVAGTIKAEEFRPINMLHTLEKILELVVKGQLLAYLNSNNLLIPEQSGYRE
FT                 GHSCETALNLVLAKWKENVERKDTIVAVFLDLKRAFETISRPLLLRTIKRF
FT                 GFSGSAYRWFESYLTDRTQRTAFNDSVSSPVVNSLGVPQGSVLGPVLFIMY
FT                 INDMRRVLRFCDINLFADDTVIFIAAKNLDDAVAHMNADLRSLSRWLKYKQ
FT                 LKLNISKTKFMLISRNRTNIDVSIQIDDETIDRVREIKYLGVIIDDRLKFD
FT                 AHIDNVIKKIAKKYGILCRLKNDLTIASKIHLYKSIISPHLEFCASILFLA
FT                 NETQISRMQRLQNKIMRLILRCNRFTSSSFLLDALQWLSVKQRIVFLTMVF
FT                 IFKVINGLLPRYLCDRIERGSDVHRYNTRNATELRTPQFLYGASQNSLFFK
FT                 GINVFNSMPIHIKRAATLSQFKRLCISHVKAAF"
XX
SQ   Sequence 5210 BP; 1661 A; 796 C; 1107 G; 1646 T; 0 other;
     ttcttgatgg taatggtgaa cagtgtagtt tgtttctgca gtgcagtgat aaataaatta        60
     aattacgtgt gaaatagtgg acttgccgcg gaacaacgat ttctatcgcg agcaacattg       120
     tattttgaaa caggataagt aggaggcaaa ttgtctctaa cgcttgtcct cgtttaattt       180
     tgcatttaat tttgccccag cagctgctgg aggctggtaa cttttttgta cactgtattg       240
     tttcatctgt gttaagtgtt gcatgcatgt ttcgtttggt ggaagtgtat aggtgctaag       300
     caaaatgact gagtgcaagc aatgtggggc cccggtatta atttctgaaa taccgaccac       360
     atgtacaggt tgtttgagtg tgtaccatta caagtgcaca ccactgacga aagctgttgc       420
     taagcttgtc agtgagaacg aaaatctgct atttaaatgt agtgattgtt tatcaagcca       480
     gtgttgtggc gagcagaatt taacgctccc gaccgtacga atgttcgaag aagagatgaa       540
     gaagatttct tctatttcgg attcgttcgg tggcgttcgg gagcaaattg ctgctcagat       600
     aaacgacgcg ttaaaaaccg ggatggagga attggtgaga agtctaaata gtaccatgga       660
     taaagcaatt tttgaaatgt caaaatctgt gagcaaagag ttggaaagta tgaaatgttc       720
     attttttgaa tttaactcga ataataattt agttgcaatg aatgataagc acggtacatc       780
     aagtacggca tcggagccga gcctgcttcc cagaggcaag aaacgtaagg ttcaggaaga       840
     cgtttgcgct atgtcggatg atgttttcgt tgaaagtatt agtttcgcgg atgttgtcaa       900
     gagtaatgct gggattaaaa ttaggaataa gagtacaaaa aagaaaagca ctgcgaatga       960
     tgtaatgcaa gtgactcgta aggctcgtcc ggtcattgtg atcaagccaa aagagtccaa      1020
     ccagagtagc gaggatactc gcaaaatttt gattaacaaa ttggatccga aaaaacacaa      1080
     aataagtaac ttgagacacg ggaaagatgg ctctattatt gctgagtgtg caacaggata      1140
     caatgttaat gttgtgaaag atggcattca aagcgatttg ggtgaaaact acaacgctgt      1200
     tgttccctca tcggtgccaa gacttttagt gaagggcatg agcgatcagt tttcctccga      1260
     tgaattcatt cggattttaa aagatcagaa tgaagacatc gcgataaatg aagtcaaagt      1320
     aataaggatg tatgaaaatc cacatttcaa gtacaaaaag tacaatgttg ttattgaagt      1380
     tgacaaagag acgcatagtt gtttgttaac ggcgcaacaa gtgtacgtta aatttgatcg      1440
     gtgtcgtgtt gttccagaga ttagtgtttt gagatgtttc aaatgtggag aattcgggca      1500
     catgagcacg aattgtaaaa attgcgacgc atgctgtagg tgcagtggaa gtcacaagac      1560
     atccgaatgt acgtcaactg ttttgaaatg tatcaattgt ataaaaatga ataaagaacg      1620
     taaaatgaac ttggacgtca accacggagc attcagttat gaatgtgaag tctttaagaa      1680
     tttgtatcaa agaaaaaaga gcagcctaca tttcaatgaa tagcaaccaa gttccagtag      1740
     taatgtgaat cagttcgata tcttgtattt aaatatagcc ggtttatcta caaactacgt      1800
     tgaattacgt cagattgtag aagaaaaacg tccatatcta gtatttttat cagaaacgca      1860
     tattgttgac atagatgcat ttgatcaata tagtattccg ggttataatg tggctgcatg      1920
     tttatcacat tcgagacaca ctggcggagt tgctatttat gtcaaagaat cagttcagta      1980
     caggcttcaa ttgaacgaag tttgtgaagg taattggttc ttgggcatcg cagttgatcg      2040
     tggcatgaag atgggtaatt acggtgtatt gtatcactct cccagttcaa gtgaccagcg      2100
     ttttattgaa attttggaaa actggcttga gatgtttgta gattgtagta aattaaatgt      2160
     tcttgctggt gactttaata ttaattggtg tgacaattcg aattcgaatc atttgaaacg      2220
     attagctgac ttttttaatt taaaacaaaa ggtaaatgtt tatacacgta tttccagaca      2280
     tagtcaaact ttgattgatc acgtttatac taatttggat tctgttagtg ttattaaaaa      2340
     ttctgattta aaagtaacag accatgaaac attagttatt aatattgatg acaatagtag      2400
     aaataaaagt gactttgtaa aattaaagtg ttggaaaaag tattcaaaac atgccgtttc      2460
     aagtcttgtc gaaagaaatg ttgattttca tacaaacgac ggttcgttag atcaaaagtc      2520
     agctgttcta actgatgttt taaaaacctg taccaataaa ttagtcgaac ataaatttgt      2580
     ttcgttgaaa aattcgaaca gctggtacaa tttggatttg ttgcgttgta aacgcaatag      2640
     ggacaaactg tacaaaaaat ggcgtagaaa taataataat acaaattgga ataggtacaa      2700
     ggtcgcgcgt aataaatact cgcaaatggt taaacaaact cgttgcgagt atattcagag      2760
     gaaaattgat cagcatcaaa acaacagcaa agagttatgg aaaattttga aatccttgtt      2820
     aaaacctagt aattgtaaac cgcggtccat aactttcaat ggcacattag aagaatcaga      2880
     acaagtaata gcatgtaaat ttaatgagta ttttgtggac agtgtttcat cgattaacca      2940
     atccattgag ttagtagatg aacctgacga aataaaacag ccgattaaca ataattgcac      3000
     atttgaatgt tttcacccaa taacgttgga agacctacga aatatttgct tttctatggg      3060
     aaaaacggct ggcgtagata acgttaatgc gagagtaata caagattgct ttgatgtcat      3120
     cggccacaat ctgctggacc tgattaatga atcgttacaa actgggcacg tgccacaagt      3180
     ttggaaggaa tcacttgtga ttcctattca aaaagttgct gggacgatta aagccgaaga      3240
     gtttcgtccc atcaacatgt tgcacacatt agagaaaatt ttagaacttg ttgtaaaagg      3300
     ccagctgtta gcatatttaa atagtaataa tttgctaata ccagagcaat cgggatatcg      3360
     ggaaggtcat tcctgtgaaa ccgcattgaa cctggtgttg gcaaagtgga aagaaaacgt      3420
     agagcgtaaa gatacgattg ttgctgtttt tttggatctc aaacgcgctt ttgaaacgat      3480
     ttctcggccc ttgttgttaa gaacaatcaa gcgctttgga ttttcgggtt ctgcatatag      3540
     atggtttgag agctatttaa ctgatagaac ccaacggact gctttcaatg attctgtttc      3600
     gagccccgtg gtgaacagcc ttggcgtacc acaggggagt gtattagggc ccgttttatt      3660
     cattatgtat ataaatgaca tgcgacgagt tttacgtttt tgtgacataa atctttttgc      3720
     agatgatacc gtgatattca ttgcggctaa aaatcttgat gatgccgttg cacatatgaa      3780
     tgcagattta cgttctctga gtagatggtt gaagtacaaa cagttgaaat tgaatataag      3840
     taaaactaaa tttatgttga tatcgcggaa tcgaacaaat atagacgtct caatacaaat      3900
     tgatgatgag acaattgatc gcgtgcgcga aattaaatat cttggcgtga ttattgatga      3960
     cagattaaag ttcgacgctc acatcgacaa tgttatcaag aaaatagcca agaagtatgg      4020
     aatactctgc cgattaaaaa acgatttaac gattgctagt aaaatacatt tgtacaaatc      4080
     aatcatctct ccacatctgg agttttgcgc ttccattttg tttttagcaa atgaaacaca      4140
     aatatcgaga atgcagcgtt tgcaaaataa aataatgcgt ttgattttga gatgcaacag      4200
     attcacttcc tcgtctttct tattagatgc tcttcagtgg ttatcggtga agcaaagaat      4260
     tgtattcttg acgatggtgt tcatttttaa agtaattaac ggtttgttgc ctcgatattt      4320
     gtgtgatcga attgaaagag gaagtgacgt tcatagatat aatactagaa acgcgactga      4380
     attaagaaca ccacagtttt tgtacggtgc ttcacaaaac tctttgtttt ttaaaggaat      4440
     aaatgttttc aattcgatgc ctatacacat caaacgtgct gcaactctat cacagtttaa      4500
     gagactatgt atttcacacg tcaaagctgc cttctgaaca gctacatgtt aacttttttg      4560
     tacttgacta atattgtatc ttgacgaagt tttgactaac ggatattttg tattgactat      4620
     attgtaaaat atgtttaata attattgggg cactaataaa ctacgatgtt cgcctcgatg      4680
     atgatgatgg attttttata tattgacgta gttatagttt attccttttt atgtgtagtc      4740
     tacggaggtt tgagtcccgc gcgcggtaca caggtataaa cgactgtttg attacttatc      4800
     attcgaattg agaatttatg ctgttggtgg atgccatgca ttagtagtaa gttttctggt      4860
     tgaatgtcgg aaatttcttg aaaatgcaaa tgtttccgat agttttgaca tcatcggcgg      4920
     ggttatcaat tctggcaatg ttttggattt tgttgaactt tcttgatcac tattaaaact      4980
     tatgaaaagt gtggttgaga ccaacagatt tttaccattt tttttttgct gtatagtatg      5040
     ggaacttgta atgttgttta tatctgttga aataatcaga ccgtttattg tttgcaaatc      5100
     tggttaacat tgatcataat taattatctt aaagatatat cgtctcgctc aaacctttgt      5160
     aggggtatgt ggtgggacca tcatcatcat catcatcatc atcatcatca                 5210
//
ID   L2B-4_AAe   repbase;    DNA;    INV; 5213 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5213
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1409-1409 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 24 sequences with >98%
CC   identity. Closely related to CR1-1_AG and L2B-1_CP.
XX
FH   Key           Location/Qualifiers
FT   CDS           330..1736
FT                 /product="L2B-4_AAe_1p"
FT                 /translation="MECGACRGGIAINGLPLFCFRCEKYFHAQCSSVENKA
FT                 AARLITDNANVFFKCDDCLSRPSCGEQNSSVFNIGSMEEDMKKISSLSDSI
FT                 DDIRNQLAAQIGNALKSGMEELVQNVNGTLNEAVNNIEKLINGKMENMTSS
FT                 FFQFNADKMKLATMKSTRDASRSVHLESTSSARKKRKISNTDEIDDFDNDD
FT                 VFEDANPFVTVVNKKARKSKSKGPKPNSPKKSETRPVIVIKPTSNQSSEDT
FT                 RKFLYEKLDPKIHKISSFRNGKDGSVIVKCATGYNVDLVKNGMQNDLGENY
FT                 SAVVPTSVPRLKVLGMSYKYSSDVIIDYLKGHNEDIAINDVKVLNVYENPR
FT                 FRYKQYNAVIEVDVDTYSCLLTAKKVNVKFDRCLVVPAVSVLRCFECGEFG
FT                 HMSTKCNNSTACSKCSGSHKTSECTSTVLKCVNCIKMNNERNMNLNINHPA
FT                 FSKNECMAYKKLFDQKKSSLHFNK"
FT   CDS           1740..4547
FT                 /product="L2B-4_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QTSSSSNVNQLDILYFNIAGLSTNYVALRQIVEEKRP
FT                 FLVLLAETHIVDIDAFNQYNIPGYNIAACLSHSRHTGGVAIYVKESVQFKL
FT                 QSNEAHDGNWFLGITVVRGMKMGNYGILYHSPSSSDQRFIEILENWFETFI
FT                 DPSKLNVLAGDFNINWSDANSNHLRRLAEYFNLKQKVTDYTRISRHNRTII
FT                 DHVYSNFDTVNSVTCSDLKITDHETLVINIEDNSSIRDNLVRKKCWRKYSK
FT                 QAVSNLVERSMGLHNSAGSLDHKAAVLTDILKTSTNKLVEQKFVSLENSNS
FT                 WYSLELLRLKRKRDKLYKKFLRRNNDNNWRRYKLARNIYSQTLKKTRCEYI
FT                 QRKIDQHQNNSKELWKILKSLLKPNNCNPRSITFDGTLEQSEQEIACNFNK
FT                 YFVDSVSSINQSIELVAEPDEIKQPVNSRCKLECFHPITFDELRSICFSLD
FT                 KTAGVDNVNARVVQDCFHVIGHNLLDLINESLRTGHVPQVWKESLVIPIQK
FT                 VAGTIKAEEFRPINMLHTLEKILELVVKGQLIKYLNNNNLLIPEQSGYREG
FT                 HSCETALNLVLAKWKEKMECKETIIAVFLDLKRAFETISRPLLLKKIERFG
FT                 ISGSAYKWFESYLCGRTQRTVFNNSVSSPVESNLGVPQGSVLGPILFIMYI
FT                 NDMRRVLRFCDINLFADDTVLFIAAKNLEQAVSNLNEDLRYLSRWLKFKQL
FT                 KLNISKTKFMIISRNRNNEQVSVEIDNEAIDRVREIKYLGVIIDDKLKFAT
FT                 HINNVIKKIAKKYGILCRLKNELTIASKILLYKSIISPHLDFCPSILFLAN
FT                 ETQISRLQRLQNKIMRLILRCDRLTSSLFLLDALQWLSVKQRIVYLTMVFV
FT                 FKVVNGLLPRYLCDRIERGSDIHRYNTRNADEIRTPNFLHGASQNSLYYKG
FT                 INVFNSMPIQIKRATTLSQFKRLCISHVKAVF"
XX
SQ   Sequence 5213 BP; 1688 A; 805 C; 1083 G; 1637 T; 0 other;
     tgtgatggtg aacattgtgg tttgtcttgc cgtgcggtgt taattaaatt ttaatttacg        60
     tgtgaaatca gcagagtgcc gcgaagaaat tacaatctgc gtgtgcctaa aagtgtttgt       120
     gatcaggata agtagaagac agtagtctct ccgttgcctg ttgtgtttaa attgaattta       180
     atttccctcg ccacggctgc aagtgacggt gccataaggc aatttcgtca gcaagctgtg       240
     gttgagtttg tttgtgcggt attgtttcac tgtttgtctc tctgtgtatc gttgtgcgct       300
     ttaactcctc ggtagtcatt gcggggggga tggagtgcgg ggcatgcagg ggggggattg       360
     cgatcaacgg gctgccattg ttttgtttcc gatgcgagaa atacttccat gcgcagtgtt       420
     cctccgttga aaacaaggca gcagcaaggt tgatcacaga taatgcaaat gtttttttca       480
     agtgtgatga ttgcctatct cgtccgagtt gtggtgagca gaacagtagc gtgttcaata       540
     tcggatcaat ggaagaagat atgaagaaaa tttcttcact ttcggattct atcgatgata       600
     ttcgaaacca actggctgct cagataggca acgcgttaaa gtccggtatg gaagaattgg       660
     tacagaatgt taacggcact cttaatgagg ctgtaaataa tattgagaaa ttaattaatg       720
     gcaaaatgga aaatatgaca agttcatttt ttcaatttaa tgcggataaa atgaaattag       780
     ctacaatgaa aagtacgcgt gatgcatcta ggtcggttca tttggaatcg acctctagtg       840
     cacggaaaaa acggaaaata agtaatacag atgaaattga tgattttgat aatgacgatg       900
     tttttgaaga cgcgaatcct tttgttacag tagttaataa aaaagctcgg aaaagtaaaa       960
     gtaaaggtcc taaaccaaat tcaccaaaaa agagtgagac tcgtccggtt attgtgatta      1020
     aaccaacgtc caatcagagc agcgaggaca ctcgcaaatt tttgtatgaa aaacttgatc      1080
     caaaaataca caagataagt agctttagaa acgggaaaga tggctccgta attgtgaagt      1140
     gtgcaacagg atataatgtt gatcttgtga aaaatggcat gcaaaacgat ctgggtgaaa      1200
     actacagcgc tgttgtccca acatcggtgc caagattgaa agtgttgggt atgagctata      1260
     aatattcctc cgatgtcatc attgactatt taaaaggtca taatgaagat atcgcgatta      1320
     atgatgtgaa agtattaaat gtttatgaaa atccacgctt ccgatacaag caatacaatg      1380
     ccgtaatcga agtagatgtt gatacgtata gctgtctctt aactgccaaa aaagttaatg      1440
     taaaatttga tcggtgcctt gtagttcccg cggttagtgt attaagatgc ttcgaatgtg      1500
     gagaattcgg gcacatgagt acgaagtgca acaacagcac tgcgtgctct aagtgcagcg      1560
     gaagtcacaa aacatcggag tgtacgtcaa ccgtattgaa atgtgtaaat tgtataaaaa      1620
     tgaataatga acgtaacatg aacttgaata ttaatcatcc agctttcagt aagaatgaat      1680
     gtatggcata taagaagcta tttgatcaga aaaaaagcag cttgcatttc aataaatagc      1740
     aaacaagttc cagtagtaat gtgaaccaat tagacatttt gtattttaat attgctggat      1800
     tatctacaaa ctacgttgca ttacgtcaga ttgtagagga aaaacgtcca tttttggtac      1860
     ttcttgcgga aacacatatt gtagacattg acgcatttaa tcagtataat attccgggtt      1920
     acaatattgc tgcttgtttg tcacattcaa gacacactgg cggagttgct atttatgtca      1980
     aagaatcagt tcaattcaag cttcaatcga acgaggcgca tgatggtaat tggttcttag      2040
     gcattacggt tgtacgtggc atgaagatgg gtaattatgg tattttgtat cattctccca      2100
     gttcaagcga ccagcgtttt attgaaattt tagaaaactg gtttgagaca tttatagatc      2160
     ctagtaaact taacgtactt gctggcgatt ttaatatcaa ttggagtgat gcgaattcga      2220
     atcatttgag gcgtttggct gagtatttca atttgaaaca aaaagttacc gattacactc      2280
     gaatttcccg gcacaataga acaattattg atcatgtcta ttctaatttc gatacagtaa      2340
     actcagtcac atgttcagat ttgaaaataa ccgatcatga aactttagtt ataaatattg      2400
     aagataacag tagtattcga gataatcttg taagaaaaaa gtgctggagg aaatattcaa      2460
     aacaggcggt atcaaatctt gttgaaagaa gtatgggttt gcataatagt gcgggcagtt      2520
     tggatcataa agcagctgtt ttaacggata tattaaaaac cagtaccaat aagttagttg      2580
     aacaaaagtt tgtatctcta gaaaactcaa acagctggta cagtttagag ctacttcgtc      2640
     ttaaacgcaa gagggataaa ctgtacaaaa agtttttaag gagaaataat gataataact      2700
     ggagaaggta caagttagcg cgaaatatat attcacaaac gttgaaaaag acccgctgtg      2760
     aatatattca gaggaaaatc gatcagcatc agaacaacag caaggagtta tggaaaattt      2820
     taaagtcttt attgaaacct aataattgta atccgcgatc cataactttc gatggcacat      2880
     tagaacagtc agaacaagaa attgcatgta attttaacaa atattttgtc gatagcgttt      2940
     catcgatcaa ccaatctatt gagttggttg ctgaacctga cgaaatcaaa cagccggtta      3000
     atagtagatg taaacttgaa tgttttcacc cgattacatt tgatgaatta agaagtatat      3060
     gtttttcttt agataaaacg gctggagtag ataatgttaa tgctagagtt gtgcaagatt      3120
     gctttcatgt cattggacac aatctgttgg accttataaa tgaatctttg agaaccgggc      3180
     acgtgccaca ggtttggaag gaatctttag tgattcctat acaaaaggtt gctggaacga      3240
     ttaaagccga agagtttcgt cccatcaaca tgttgcacac attagagaaa attttagaac      3300
     ttgttgttaa aggccaactg ataaaatatt tgaataataa taacttgctg ataccagagc      3360
     aatcgggata tcgagaagga cattcttgtg aaaccgcatt gaacttggtt ttagccaaat      3420
     ggaaagaaaa aatggagtgt aaagaaacta tcattgctgt atttctggat ctgaaacgcg      3480
     ccttcgagac gatttctagg cccttattgt tgaaaaaaat cgagcgcttt ggaatttcgg      3540
     gttctgcata caaatggttc gaaagctatt tgtgtggaag aactcaacgg actgttttta      3600
     ataattcggt ttccagtccc gtggaaagta atcttggtgt tccacaggga agtgtattag      3660
     ggcccatttt atttattatg tacattaatg acatgagacg agttttacga ttttgtgata      3720
     ttaacttgtt tgcggatgac accgtgttat tcattgcagc taaaaattta gaacaagccg      3780
     tttcaaactt gaatgaagat ttgcgttatt taagtagatg gttgaagttt aaacaactga      3840
     aattgaacat aagtaaaaca aaattcatga tcatttcgcg gaatcgtaat aatgaacaag      3900
     tctctgttga aattgacaat gaggcaattg atcgcgttcg agaaattaaa tatcttggcg      3960
     tgattattga tgataagctt aaatttgcca ctcatattaa caatgtcatc aagaaaatag      4020
     ccaagaagta cggtattctt tgtcgattaa aaaacgaatt aaccattgct agtaagatat      4080
     tgttgtacaa atcaatcatc tctcctcact tggatttttg cccttccatt ttgtttttgg      4140
     ctaatgaaac acaaatatcg agattgcagc gcttgcaaaa taaaattatg cgcttgattt      4200
     taagatgtga tagactcact tcctcacttt ttttgttaga cgctctacaa tggctgtcag      4260
     tgaagcaaag aattgtttat ttgacaatgg tgttcgtttt taaagtagtc aacggtttgc      4320
     tgcctcgata tttgtgtgac agaattgaaa gaggaagtga cattcataga tataacacaa      4380
     gaaacgcgga cgaaatcaga acacccaatt ttctgcatgg tgcttcacaa aactcattat      4440
     actacaaagg aataaatgtt ttcaattcta tgccaataca aataaagcgt gcaacgactc      4500
     tgtcacagtt caagagacta tgcatttcac acgtaaaagc tgtattttga gcagccaaat      4560
     ggtaattttt taataatgac taattttgta tcttgacgat gtttttacaa acagattatt      4620
     tgattgcata atttatttgt tttatttcat tagggtatag acaaactatt atgttcaccc      4680
     tgatgatgat gatggatttt tatattgttg acgtagcttt agcttaaaac ctattttttt      4740
     gtgaagtcta caaaagtttg agtctcgcgc gcggtacaca ggtataaatg actattttat      4800
     gatttgtaaa caaaattgga caattgcact gttgaaggat tctttggatt attagtaggc      4860
     tcgctggttg aatgtcggaa acttcttgaa aatgcgaatg ttgtcgatag ttttgaaatc      4920
     gtcttgcgga gttttcaatc ctgacaaggt tttggatttt gttggaattt catgatcact      4980
     ggttatgctt atgaacatct gtggttaaga tcaatggtgt ttacaaaatt tctttgttgc      5040
     tgtatagtat gaaaatttct atgttattta tatctgtaaa aaataatcag accgtttcgt      5100
     tttgcaatat ctgattaaat tgatcataat aattatctta aagatatatc gtctagctca      5160
     aacctttgta ggggtatgtg gcgggaccat catcatcatc atcatcatca tca             5213
//
ID   L2B-4_CQ    repbase;    DNA;    INV; 4705 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4705
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 145-145 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           278..1603
FT                 /product="L2B-4_CQ_1p"
FT                 /translation="MSTSVQCSVCSAAIKEGNEKIYCFGPCGKIMHPKCCG
FT                 EINMDGIKAMQTNRGLKYFCHDCRNSQCDYNNVLGICNSILTKVNETEKMM
FT                 KKEITEQIREYTKTANEANEKGFVLLKDYIMSENKKLEDKLSAKTNTSGRN
FT                 RKEETSLSGPSGNTRSQSKQKTAKAGETGSVTQNYAEVLINGRKESEIDQN
FT                 REIPKEKETVIIIKPKEGDQSAKKTKQQLKEKLNRTENHILNVREGRNGTV
FT                 ILGVLDNVESVAKSVQEKCGELFNVTVPKPKKPRLKIVKVAEELNEKELRE
FT                 ALIEQNDVSDDIELRLVTSFKNGLDEYCVWTYIIEVDSSSHEFLLELEKVN
FT                 IGWERCKIVECFGIIRCFKCCCYGHKSNECKSDREVCSICAENHRTNECKS
FT                 EIECCANCSTMNRMRGLKLSTDHVAFSRECPVYKRQVARKRHQIDYTR"
FT   CDS           1607..4432
FT                 /product="L2B-4_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QSTKNKNNKQKWSVISLNCGGLSTNFEEFKLLVQTYK
FT                 PRLVLVTETHITEQLGDEHLGIDGYNHVSCFSDSRHTGGVMIYSQSNIEYN
FT                 VLCKSQIGRNWFLSIDVTRGMKIGRYATLYHSPNEPHATFLKILEENWLEQ
FT                 FVDLSKFIVVVGDFNIDWSRETSDASNLKQICDSLGLKQNVQDYTRITRLT
FT                 KTMIDLVFSNCDIGVRTVSEMKISDHETLCWYNVNECTVASKSMKKITCWK
FT                 NYSKSALVNLLRQNRNLTFNFENIHENAINLISNLKKCVQTLITEKLVSVD
FT                 KCCKWFSVELLQMKQRRDQAYLKHVTEGGANSWAIYKAFRNEYSSTLRRKR
FT                 KEYIQKSIEENKNNSKELWKILKKMIKPESAPANTICFDNVNEKNRVEIPR
FT                 KFNEYFVKSVEEISNSIEEVNAPPELECQFSATNMSFFETITLEKLKSVIW
FT                 SLESKSGSDNISASVLRDAFEVIGQDLLNVINQSLISGVVPDSWKESVVIP
FT                 IEKVQGTMNASEFRPINMLPLYEKVLELTVKEQLLNYLNVNKLLAAEQSGY
FT                 RKNHSCETALNLVISKWKKQLESRKKIFAVFLDLKRAFETISREKLIAVLK
FT                 QYGITGNVINWFSSYLVNRSQRTKFNSVISVSIETLVGVPQGSVLGPLLFI
FT                 LYINDMKRVLKHCDINLFADDTVLFIASDNAVAAIEKLNFDLENLSRWLKF
FT                 KKLKLNVSKTKYMIIANNKASLPNLIVSINGERLECVTEIKYLGVIIDDKL
FT                 DFKKHIDYSIKKIAKKFGVLCRLRNDLTQWSLIYMYKALISPHFDFCPSII
FT                 FLANEQQMNRLQKIQNKIMRLILKCNRRTPRQSMLNALQWLSVRQRVTFLT
FT                 VVLIYKIANGMAPEYLQKILIRGSDIHQHNTRMASEIRAASFLLTSTQNSL
FT                 FYKGIKLYNTLPRDFKNEKNFAVFKRKTLGFVKENVGI"
XX
SQ   Sequence 4705 BP; 1772 A; 664 C; 956 G; 1313 T; 0 other;
     agtagtacag tagtacagtg tagacgcact tttattgtgt aaacaaaaat tgtctaaaaa        60
     ttgatgtaaa aggtggcttt caagcttagt ttttggactc aggtgtgaat cgtgattgat       120
     tctcgcgacc ggtgtagtta gtggttcgcg aaacgcatga ttaatcggaa aaaagtgata       180
     agaaaaattg cgaaacaaac ggagaaacaa gaagccaggc aaagtgtttg gtgtgcttgt       240
     aatagtgtgg ccgaagggcc agctataaat ctgcaccatg tctacgagcg tgcagtgtag       300
     tgtttgttcc gcagctatca aagaagggaa cgaaaaaatt tattgttttg gaccgtgtgg       360
     aaagataatg cacccaaaat gctgtggtga aataaatatg gatggaatca aggcaatgca       420
     aacaaacaga ggcctgaaat atttttgtca tgattgcaga aactctcaat gtgattacaa       480
     taatgtgctg ggaatttgta atagtatttt gacaaaggtc aacgaaactg aaaagatgat       540
     gaaaaaagaa attacggaac aaataaggga atatactaaa acagcaaacg aggcgaacga       600
     aaaaggattt gtattgctaa aagattatat tatgagtgag aataaaaaac tggaagataa       660
     attgtctgcc aaaaccaaca ctagtgggag aaataggaaa gaagaaacat cgctctctgg       720
     cccaagtgga aacactcgct ctcaaagtaa acaaaaaacg gcaaaggctg gtgagacggg       780
     tagcgtgacg cagaactatg ctgaggttct aataaacggt agaaaggaaa gtgaaattga       840
     tcaaaatagg gaaatcccta aagaaaaaga gactgtgatt ataattaaac ctaaggaagg       900
     ggaccaatcg gcaaaaaaga ccaagcaaca gttgaaagaa aaattaaacc gcactgaaaa       960
     ccacattcta aatgtgagag agggcagaaa tggaactgtt atactgggtg tcttggataa      1020
     cgtggaaagt gtagctaaat cagtccagga aaaatgtgga gaactcttca atgtgaccgt      1080
     tccaaaacca aaaaaaccaa gactgaaaat agtaaaagtg gctgaagagc ttaatgaaaa      1140
     agagttaaga gaggccctca ttgaacaaaa cgacgtatct gatgatatag aactgcgatt      1200
     agtgacaagt tttaagaatg gtcttgatga atactgtgtg tggacctaca tcattgaagt      1260
     tgattcttct tctcatgaat ttttgcttga attagagaag gtgaacatag gatgggaaag      1320
     atgtaaaata gtggaatgct ttggcattat tcgatgtttt aagtgttgtt gttatggcca      1380
     taaaagtaat gaatgtaaga gcgataggga ggtttgctcc atttgcgcag aaaaccacag      1440
     aacaaatgaa tgtaaatctg aaatagaatg ttgtgctaat tgttcgacaa tgaatagaat      1500
     gagaggttta aaattaagca cagatcatgt tgcatttagt cgtgaatgtc ctgtctataa      1560
     aagacaagta gcccgcaaac gccatcaaat tgattacact cgatagcaat caacgaaaaa      1620
     caagaacaat aaacaaaaat ggtcagtgat tagcttaaac tgtggcggac tgtctacaaa      1680
     ctttgaagaa tttaaattat tagtccaaac atataaacca agattagtgt tagtaacaga      1740
     aactcatata acagagcagt tgggagatga acatttggga atcgatgggt acaaccatgt      1800
     gagttgtttt tcagactcaa gacacacagg aggtgtaatg atttattcac aatcaaacat      1860
     tgaatacaat gtgctttgca aaagccaaat cggacgaaat tggttcttgt caatcgatgt      1920
     aactaggggt atgaagattg gaagatatgc aacgttgtat cattccccaa atgagccgca      1980
     tgcaacattt ttaaaaattt tagaagaaaa ttggcttgag caattcgtag acttgtcaaa      2040
     atttatagtg gtggttggtg acttcaatat tgactggtca agagaaacaa gtgatgcatc      2100
     taatttgaaa caaatctgtg attcattagg tttaaaacaa aatgtccaag attatacacg      2160
     cataacgagg ttgaccaaaa caatgattga tctagtcttt tctaactgtg atataggtgt      2220
     gcgtactgtg agtgaaatga aaatatctga ccatgaaact ttgtgttggt ataatgtgaa      2280
     tgagtgtact gttgctagta aatcaatgaa aaagatcact tgttggaaaa actattctaa      2340
     atctgctcta gtaaatcttt tgagacaaaa cagaaattta acatttaatt ttgagaatat      2400
     tcatgaaaat gcaatcaact taataagtaa tttaaaaaaa tgtgttcaaa cgttaataac      2460
     tgaaaaatta gtctctgttg ataaatgctg caagtggttc tcagtggagc tattacaaat      2520
     gaagcaaagg cgggaccagg cctatttgaa acatgtaaca gaaggaggag ctaattcatg      2580
     ggcaatttat aaagcattca gaaatgaata ctctagcact ttaagaagaa aacggaaaga      2640
     gtatattcaa aagtcaatcg aagaaaataa aaataacagt aaagagttat ggaaaatatt      2700
     aaagaaaatg ataaaacctg aaagtgcacc ggctaatact atctgctttg ataatgtcaa      2760
     tgaaaaaaat agagttgaaa ttcctagaaa atttaatgag tatttcgtaa agagtgtgga      2820
     agaaataagc aattctattg aggaagtgaa tgcaccacct gagcttgagt gtcaattttc      2880
     tgcaacaaat atgtcgtttt ttgaaacaat aacattagaa aaactaaaat ctgtgatatg      2940
     gtctttagaa tcaaagtctg gatctgacaa tatcagtgct tctgttttgc gcgacgcttt      3000
     cgaagttata ggacaagatc tattgaatgt gattaatcag tcattaatat ctggagtggt      3060
     gcctgacagt tggaaagagt cagtggtcat tcccatagaa aaagtccagg gaacaatgaa      3120
     tgcatcagag tttcgaccaa taaacatgct tcctctctat gaaaaagttt tagaactgac      3180
     agttaaagag caacttctaa attatttaaa tgttaacaaa ctcctagcgg cagagcaatc      3240
     tgggtaccgt aaaaaccatt cgtgtgagac agctcttaac ttggtgattt caaaatggaa      3300
     aaaacaattg gaaagcagga aaaaaatatt cgcggttttt ctagatttaa agagagcttt      3360
     tgagactatt tcaagagaaa aattgattgc agtccttaaa caatacggaa ttacaggaaa      3420
     tgtgattaat tggttttctt cttacctagt caatcgaagt caacgaacta agtttaactc      3480
     tgtgatatca gtttccatag aaacgttagt tggagtacct cagggaagtg ttttaggtcc      3540
     ccttttattt attttatata taaacgacat gaagagagtt cttaaacatt gtgatattaa      3600
     cttgtttgcg gatgatactg tgctctttat tgcctcagac aatgcagttg cggctattga      3660
     aaaattaaat tttgatttgg aaaacctctc tcgttggcta aaattcaaaa aactcaaact      3720
     aaatgtatcg aaaacaaagt atatgataat tgctaataac aaagcaagtc tgccaaattt      3780
     gatagtcagt attaatggcg aaagattaga atgcgttacc gaaattaaat atttgggagt      3840
     aatcattgac gataaactgg actttaaaaa acacatagat tatagtatta aaaagattgc      3900
     aaaaaaattt ggtgtactgt gtcgtttacg caatgattta acccagtgga gtttaattta      3960
     tatgtacaaa gcacttattt caccacactt tgatttctgc ccatccataa tatttctagc      4020
     taacgaacag caaatgaata ggttacaaaa aatacaaaat aaaatcatgc gtttaatttt      4080
     aaagtgtaat aggcgaactc caaggcaatc tatgttaaat gcactgcaat ggttatcggt      4140
     gaggcagcgt gtaacatttc taacagttgt tttaatttat aaaatagcaa acggaatggc      4200
     acctgaatat cttcaaaaaa tattgattcg tggttcagac attcatcagc acaacactcg      4260
     tatggcttca gaaataagag cagcatcgtt tcttttaaca agcacacaaa attcattatt      4320
     ttataaaggt ataaaactat acaatacatt gcctagagac tttaaaaatg aaaagaactt      4380
     tgcggtgttc aaaaggaaga cattaggttt tgtaaaagaa aatgttggta tatgatttga      4440
     gtactagttg agtgtagatt aagtgacttt ttttttaaat gtattaattg tgtgaatatc      4500
     tttgtatgat gataaaatta gcaaaaaaaa atagataaat aaaataaggt tgatggacgc      4560
     gcatgggctt aaaaaaaata aataataata gcaacataac aatgcaaaca agaagtgaat      4620
     taactaaaca aaatatctaa caagataaat cagacactct gctattccca tgggcggggg      4680
     taagtggagg gccatcatca tcatc                                            4705
//
ID   L2B-5_AAe   repbase;    DNA;    INV; 4567 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4567
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1410-1410 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97%
CC   identity. Closely related to CR1-1_AG and L2B-1_CP.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1687
FT                 /product="L2B-5_AAe_1p"
FT                 /translation="MSIQCTVCAKVINAVNDRVFCFGGCGQVLHAKCADLT
FT                 NVQATSLRENVSLKYMCHDCRKKQVCLNTMSGKCEEILRAINEIKIRVERI
FT                 ESDCERNXVCDAIKKSEESLKVFIQEXIRVQFTNLVSSEDKCLRAENQDAI
FT                 ISDVTTPGEGLAGSRGTSLISYASXAKRNRRISANESVLRSGRVRQRSDIS
FT                 TPKTGGKGHEQMNNAENVQSDARGKSSQKTLDCMVRIKPAVQQTNQQTKKE
FT                 VRNKINPSQMGIKSVRNGMNGSIVVECGTKNEAEGLLDKVRNELGENYMAA
FT                 IEQPKRPRFKIIGVEDEYDSDELRNIFKNQNNIENVQFLKILKTLKHRRGV
FT                 YTEFTLICESDSSTFEQIMRKGRLYIDFDSCRVTESVDIFRCFKCCGYAHK
FT                 SQDCKNGLHCARCAGNHDIKECSSEQEKCINCAVSNKDRKTRLDVNHTAWS
FT                 SECPIYLRRLRLSKQYIDYNK"
FT   CDS           1691..4498
FT                 /product="L2B-5_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSKDVADIILLNIAGITTHFDELELLVDSKKPKLVML
FT                 TETHLTTDIDIAAFSIRNYKICCCYSNSRHTGGVMMYIHDSIKFHEINNLV
FT                 KGMNWFLAVKIVKGLKVGVYGLLYRSPNGNKNEFLEYLELNWLENTLDDNQ
FT                 MNLIAGDFNINWKDPSDSESLRNITQCFNLNQRVEDATRRTRQSETMIDLV
FT                 FCNNDDVKVSIEENSKISDHETLRIDLGQNDGCVEDVLTIKCWRNYSKDAL
FT                 LALLRNKMSHESARLLDEKADVLATVLKESVNELVIVRKIKCRSRKKWYTI
FT                 ELKKLKHSRDVAYKIASQSWDDVEWQNYTILRNEYSNSLRKAKAEYTQKQI
FT                 NLNRGNSKQLWKTLKKLWKNKENSANCISFNGSSVEDGNEICNKFNSYFVD
FT                 SVQEINSSIENVPDTYNDQNEHLSDQLSVFRQISLDDLRKVVYSIGNSSGV
FT                 ENVNLQVLKDSFEVTGEYLLNIVNESLEIGKCPQNWKQSVVVPIPKIPGTT
FT                 KAEEYRPINMLPIYEKVLEVIVKNQLLDYLKSQKILIEEQSGFRQNHSCES
FT                 ALNLLLYKWKRMIEEKKSIIVLFLDLKRAFETISRPIMLNTLRRYGVAGKV
FT                 LSWFESYLSSRTQICQYNGSNSLPRVVPLGVPQGSVLGPLLFILYINDMKK
FT                 AVKYCDINLFADDTVLFIGDKDPLSAVRKIRADILTLTNWLKFKKLKLNVQ
FT                 KTKLMIITNKKQIELDEIKLEIDGLEIERVNVFKYLGVYIDDRLTFKEHID
FT                 NVVKKVARKYGMLVRLKSQLTFWSKLFLYKSLIAPHIDYCSSVLFLASDIH
FT                 LRRLQKLQNKFMRLILNCDRYTPIQTMLDTLQWQSVKQRIIFNVLLLIYKL
FT                 TNNKLPDYLNDIIVRGRNIHQHRTRRIDDLRVVPFTMSTNQKSIYYNGIRI
FT                 YNQLPLDVKNARSIQEFRRKCSGWVKNSFSIR"
XX
SQ   Sequence 4567 BP; 1706 A; 641 C; 920 G; 1294 T; 6 other;
     tctactacta tcgcagtgtg cagacgtgaa atwatcagcc gaataaacct caatctaaac        60
     ctgtgaaata ttaatcaatg cgtaataaat catacatcat aagacgttgt gagcaaaatc       120
     cagttgaatg gtgtacatta cgtcggagta cwcgcaaagt gaagtgaatt atcatcaatt       180
     taatttcatc gcggtagtga aattacgatt cgctttcaac tgaaagtgcc tacagaacaa       240
     agcggccgtt ggccgtgcaa caatacaata cagagagcac gcatcaaaaa tgtctatcca       300
     gtgtactgtt tgtgcgaaag tgataaatgc agtgaatgat cgagttttct gttttggtgg       360
     atgcggtcaa gtactacacg cgaaatgtgc ggatttaact aatgtgcaag caacttcttt       420
     acgtgaaaat gtttccttga agtatatgtg ccacgactgt agaaaaaaac aagtgtgcct       480
     caatacaatg tcggggaaat gtgaagaaat actgcgggca atcaatgaga ttaagatccg       540
     tgtggaaaga attgaatcag attgcgaaag aaacawtgtt tgtgacgcaa taaaaaagag       600
     cgaggaaagc ttaaaagtgt tcatacaaga amatattaga gtacaattta ctaatttagt       660
     gagctcggaa gataaatgtc ttagagccga aaatcaagat gctataattt ctgatgttac       720
     cactccgggc gaaggcctag ctggtagtag aggaacgtca ttaattagtt atgcatcgst       780
     agcgaaaagg aatagacgaa taagtgcgaa tgaatctgta ctacgttcag gtcgtgttcg       840
     acagagaagt gatatttcaa cccccaaaac tggtggcaaa ggtcatgagc aaatgaataa       900
     tgcggaaaac gttcaaagtg acgcaagagg aaaaagttcc caaaaaacac tggactgtat       960
     ggtgcgaatt aaaccggcgg tacagcaaac taatcagcaa acaaaaaaag aggtaagaaa      1020
     taaaattaat ccgtcccaaa tgggtatcaa gagtgtgcga aatggcatga atggatcaat      1080
     tgtggttgaa tgtggaacaa aaaatgaagc cgaagggcta ttggacaaag twagaaatga      1140
     actgggagaa aactatatgg cagcaattga gcaaccaaaa agaccaaggt ttaaaattat      1200
     tggtgttgaa gacgaatatg attctgatga gctgagaaat attttcaaaa atcagaacaa      1260
     tattgaaaat gttcaatttt tgaaaatttt gaagacacta aagcatcgta ggggtgttta      1320
     tacggaattc acgcttattt gtgaatctga ctcaagtact tttgagcaaa ttatgcgtaa      1380
     aggaagactt tacatcgatt ttgatagttg tagagtcaca gaaagtgttg atatatttcg      1440
     ttgtttcaaa tgttgtggtt acgctcacaa atcacaagat tgtaaaaatg gtttacattg      1500
     cgcaagatgt gccgggaatc atgatataaa agagtgttcg tctgaacaag aaaaatgtat      1560
     aaactgcgca gtttcaaata aggacaggaa aacaagacta gatgttaatc atactgcatg      1620
     gagctctgag tgtccaatct acttgagaag gttaagacta tcaaaacagt atattgatta      1680
     taataaatag caatcaaagg atgtagcgga cattattttg ttgaatattg ctggaataac      1740
     tacacatttt gacgaattgg aacttcttgt agattccaag aaaccaaaat tggttatgct      1800
     tactgaaaca cacttgacaa ctgatataga tattgcggca tttagcataa gaaattacaa      1860
     aatttgttgc tgttattcaa attcgagaca cactggtgga gttatgatgt atattcatga      1920
     ctctataaaa tttcatgaaa tcaataattt ggtgaaagga atgaattggt tcttagcagt      1980
     taagatagtc aaaggactaa aagtaggagt atatggtttg ctctatcgtt ccccaaatgg      2040
     caataaaaat gaatttttag aatatttgga actaaattgg ttagaaaata ctctagacga      2100
     taatcagatg aacttgattg cgggagactt caatataaat tggaaggacc caagtgacag      2160
     tgagagcctg cgcaacatta cacagtgttt caatttgaat cagagagtag aagatgcaac      2220
     aagacgtaca agacagtccg aaacgatgat agatttagtt ttttgtaata atgacgatgt      2280
     taaagtttca attgaagaaa acagcaaaat atctgatcat gaaacattgc gaattgatct      2340
     tggtcagaat gatggatgtg ttgaagatgt tttgacaata aaatgctgga gaaattattc      2400
     taaagatgca ttactagcat tgctgagaaa taaaatgtct catgagagtg caagattgtt      2460
     agatgaaaaa gctgacgttt tagctactgt tcttaaggag agcgtgaacg aacttgttat      2520
     agtgagaaag attaaatgtc gatcccgaaa gaaatggtat acaatagaac taaaaaaact      2580
     gaaacattca agagatgtag cttataaaat agcaagccaa agttgggatg atgttgaatg      2640
     gcaaaattat actatactga ggaatgaata ttctaattct cttagaaagg cgaaggcaga      2700
     atacactcaa aaacagataa atttaaatag aggcaatagt aaacagctat ggaagacgct      2760
     taaaaaatta tggaaaaata aagagaattc agctaattgt ataagtttca atgggtcaag      2820
     cgtagaagat ggtaatgaaa tttgcaataa atttaattcg tactttgttg atagcgttca      2880
     agaaataaat agcagcatag aaaacgttcc tgatacctat aatgatcaaa atgaacattt      2940
     atcagatcaa ttgagtgtat ttcgacagat ttctctggat gatctcagaa aagtagtata      3000
     tagcataggt aactcatctg gtgttgaaaa cgtgaatctt caagtactga aggactcgtt      3060
     tgaggtaact ggcgaatatt tactaaacat tgttaatgaa agtctcgaaa ttggcaaatg      3120
     cccacaaaat tggaaacaat cagttgttgt accaattccg aaaatacctg gaacaactaa      3180
     agcggaagaa tatagaccaa ttaatatgct acccatctat gaaaaagtgt tggaagtcat      3240
     cgtaaaaaat cagttgttgg attatttgaa aagtcaaaag atattaattg aagaacaatc      3300
     tgggtttaga caaaaccact cttgcgaatc agctcttaat ttacttttgt acaaatggaa      3360
     aaggatgatc gaagaaaaaa agtcaataat tgtgttgttt ctggatctta aacgagcatt      3420
     cgaaacaatt tcacgcccta tcatgttaaa cactttgcgt agatatggtg ttgcaggaaa      3480
     agtcctaagt tggtttgaat catatttatc gagtcggaca caaatatgcc aatataacgg      3540
     atcaaattca ttgcccagag tagttccttt aggagtacca caaggtagtg tccttggacc      3600
     attattattc attctgtata taaatgacat gaaaaaggct gtcaagtatt gtgatattaa      3660
     cctgtttgca gacgacactg ttttattcat tggtgacaag gatcctttat cagcagttag      3720
     aaaaattaga gcggatattt taacattgac caactggcta aaatttaaaa aattgaaatt      3780
     aaatgtgcaa aaaaccaaat tgatgattat aacgaataaa aagcaaatag aacttgacga      3840
     aataaaatta gaaatcgacg gattggaaat agaaagagta aatgtattca agtatctagg      3900
     tgtttatatt gacgatagac taaccttcaa agaacatatt gataatgtag tgaaaaaagt      3960
     ggcaagaaaa tatggtatgt tagtacgtct gaaaagtcag cttacatttt ggagtaaatt      4020
     gtttttgtat aagtctttaa ttgcgcctca tatagattac tgttcatctg ttctttttct      4080
     ggcgagtgat atacatctga ggagactaca gaaacttcaa aataaattta tgcgattaat      4140
     tcttaactgt gatagatata ctccaatcca aacaatgtta gatacactac agtggcaatc      4200
     tgttaagcag cgtataatat tcaatgttct tttgctcatt tacaaattga cgaacaataa      4260
     gttaccagac tacctcaatg atattattgt aagaggaaga aatatacacc aacatagaac      4320
     gagacgaatt gatgatttgc gtgttgtacc cttcacaatg tctacgaacc aaaaatcgat      4380
     atactataac ggaatacgaa tttataatca gctaccattg gatgtaaaaa acgcaagatc      4440
     gattcaagaa tttagaagaa aatgttctgg atgggtgaag aatagtttta gtataagatg      4500
     aagaatgtat gaatttgtaa acttgtaaat tatcataaga taaataaatg aactattatt      4560
     attatta                                                                4567
//
ID   L2B-5_CQ    repbase;    DNA;    INV; 4116 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4116
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 146-146 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..765
FT                 /product="L2B-5_CQ_1p"
FT                 /translation="SRKRKLEAENQNGSNGDETPKSIPSFAEVLNSKRAKK
FT                 DDNVKTVPAERLKVKPNPVVVIQPRKGVDIGEKTAKKELKQKVNPKNLNVN
FT                 RVIEGKDGAVIVVVKDDESSQKLKESVEKEMGDQFEVNVRDSMKPTVKIIN
FT                 ISEEFNEDELKATLIEDNDVFHDLKHFKLRKFYRNEKRSYAQFTALVELDA
FT                 TTFFKVMELEKIFVGWDRCRVFDGLEVPRCFKCCKYNHKIAECKAEVDTCP
FT                 KCAGIIEGRTVSQL"
FT   CDS           909..3719
FT                 /product="L2B-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QPDKPHDVLYLNIAGLPTHFDELQLLIQNQKPKLVIL
FT                 TETHLTASHDLARFAVPCFEMVNCFSKSLHTGGVSMYIDDRLTHEIVSNKT
FT                 VGANWFLSVDISNSSFNGIFGGVYHSPSSSDRDFVECFESWLQEVVVEDKT
FT                 NVIAGDFNIRWGQGPYSLELRNATDVAGLKQKITEYTRSHGGSRSIIDLVF
FT                 SNIDECDASVVEEFKISDHETIGVCVPGALVVSLPDNKKKFVSWKKYSKSR
FT                 LQALLRSDVTLQTQEVSVDAKAKVYSSSLVKAVSELTEERVVRATRSNAWF
FT                 GSSLQMLKQQRDDAYKTYKRTSSEECWQRYKILRNLYVKELRNAKNGSVRQ
FT                 EIDRCSGDSKRLWKCLKSLITPGGMKKSSIVFEGDEGGSCSDEMTARKVNK
FT                 FFVKSVEEIHKSIPAPQLPEVSSLPPQNLFDSFQPITMEKLIEIVASLKKC
FT                 SGTENITKQVLLDSLGIVGGKLLEIVNVSLQQGVFPKEWKKSTVIPIPKVA
FT                 KSTKPEDHRPINMLPLYEKVLETVVKEQLLDFINREEILLTEQSGFRKKHS
FT                 CESALNLLLLKWKQAIENKRTILAVFVDLKRAFETIDRRKLVEVLRRYGIA
FT                 GNVLKWFSSYLEERTQVTLFNGVLSPEVAVDLGVPQGSVLGPLLFILYMND
FT                 IKKALQRSEVNLFADDTVIYVTGSCREECCEILNAELNVFADWLKRKKLKL
FT                 NVSKTKCMLITNQRRDDTDGTVYIDGEVVERVDVIKYLGVMLDNKLNFDEH
FT                 INYTIRKAARKLGIMYRLNKYLSFDNKLMIYNTLIAPHFDYCASILFTATQ
FT                 QQQKRMQLLQNKVMRLILGCERLTPRSFMLDCLRWMSVRQRVEYNTLVFIF
FT                 RLTKGMAPQYLTDTIVYGSDVHQHFTRQAREIRLLNFKMTSTQNSLFYKGY
FT                 RLFNMLPEATRNSDNLRDFKKFCKSFVRQRPLL"
XX
SQ   Sequence 4116 BP; 1331 A; 662 C; 989 G; 1134 T; 0 other;
     tctcgtaagc ggaaactgga agctgaaaat caaaacggaa gcaatggtga tgagactccc        60
     aagtcaattc catcatttgc ggaagttcta aatagtaagc gagccaagaa agatgacaac       120
     gttaaaacgg tgccagctga gaggttgaag gttaaaccga atccagtggt cgtcattcag       180
     ccgaggaagg gagttgatat tggagaaaaa actgcgaaaa aggaattaaa acagaaagtt       240
     aacccaaaga atttgaatgt caaccgtgtc attgaaggaa aggatggagc agttattgtt       300
     gttgtgaaag atgacgaatc atcacaaaag ttgaaggaaa gtgttgaaaa ggaaatgggt       360
     gaccagtttg aggttaatgt tcgtgacagt atgaaaccca ctgtgaaaat catcaacatc       420
     agtgaggagt ttaatgaaga cgaactgaag gctacgctta ttgaagacaa tgacgttttc       480
     catgacttga aacattttaa gctccgtaag ttttacagaa atgaaaaaag aagttatgca       540
     cagtttacag ccttagtaga gttagatgcg acgacctttt ttaaagtgat ggagttggaa       600
     aaaatctttg ttggatggga tcgctgcagg gtttttgacg gacttgaggt tccaagatgt       660
     ttcaaatgct gtaagtataa ccataaaatt gcagagtgca aagcagaggt agacacatgc       720
     cccaaatgtg cgggaatcat cgagggaagg actgtaagtc aactgtagag aaatgtgcta       780
     actgtgaaag agatcgtgtt gaggggaatc tggacgttga aacggatcat gctgtatgga       840
     gtaccaactg cccagtttat caaaggttta ttaaacgtct taataagcgg attgattaca       900
     ctgcatagca accagacaag ccacatgatg tattgtattt gaatattgcg ggacttccaa       960
     cgcatttcga tgagcttcag ttgttaattc aaaatcaaaa accaaagctt gtaattttga      1020
     cggagacgca tttgaccgct agtcacgatc ttgcccggtt tgcggtacct tgttttgaaa      1080
     tggtgaattg tttttctaaa tctcttcata ccggtggagt ctcgatgtac atcgacgatc      1140
     gtttgactca tgaaattgta tcgaataaaa ccgttggggc aaactggttt ttgtcggttg      1200
     atataagcaa cagtagtttc aatggaattt ttggcggtgt ttatcactct ccaagcagca      1260
     gtgataggga cttcgttgaa tgtttcgaaa gttggctgca agaagtggtt gtggaggaca      1320
     aaacgaatgt aattgcagga gatttcaata ttcgttgggg gcaaggtccg tactctctcg      1380
     agcttagaaa tgcaacggat gtagctggat taaaacaaaa aataacagaa tatactcgta      1440
     gccacggtgg aagtagatcg ataattgatc tggtgttttc taatatagac gaatgcgatg      1500
     ccagtgttgt tgaggaattc aaaattagtg accacgaaac aatcggtgtg tgcgtcccgg      1560
     gtgcactagt tgtcagtttg ccagataaca aaaagaagtt tgtgtcatgg aagaaatatt      1620
     caaaatctcg tttacaagcc ttgttaagaa gtgatgtcac cctgcaaact caagaagtat      1680
     cagtggatgc aaaagcgaaa gtttacagct cctcgttggt gaaagcagta tctgaattga      1740
     cggaagaacg agttgtgaga gcgactagaa gcaacgcatg gtttggatca agtttacaga      1800
     tgctgaaaca gcagagagat gatgcataca agacgtacaa gcggacaagc agtgaggaat      1860
     gctggcaacg gtataagatc ctgcggaacc tttacgtcaa agagctacgt aatgcaaaaa      1920
     acggctctgt aaggcaagaa atcgaccggt gtagtggaga ctctaaaagg ctgtggaaat      1980
     gtttaaagtc gctgataact ccaggaggca tgaagaaatc atcaattgtt tttgaaggtg      2040
     atgaaggtgg ttcctgctct gatgaaatga cggcaagaaa ggttaataag ttttttgtaa      2100
     aaagtgttga ggaaatccac aagtcaatac cagcgcctca gttaccagaa gtttcaagtt      2160
     tgcctcctca aaatctattt gattcattcc agccaatcac gatggagaag ttgattgaga      2220
     tagttgcgtc gctaaaaaaa tgctctggta ctgaaaatat caccaaacaa gtgctgttag      2280
     actcattggg cattgttggt ggtaaactgt tggagattgt taatgtttcg ctacaacaag      2340
     gtgttttccc gaaggaatgg aaaaaatcta ctgtcatacc gattccaaaa gttgcaaaat      2400
     cgacaaaacc agaagatcat cgaccgataa acatgctgcc attgtatgaa aaagtgttgg      2460
     aaactgtcgt gaaagaacag ttattggatt tcataaaccg tgaagagatc ttgttgaccg      2520
     aacagtctgg ttttcgtaaa aagcattcct gtgaatcagc gttgaacctg ttgctgctta      2580
     agtggaaaca agctattgag aataaaagga cgattcttgc tgttttcgta gacctcaaga      2640
     gagcgtttga gacaatcgat cgccgtaagc tcgttgaagt tttacgacgc tatggaatag      2700
     cagggaatgt actcaaatgg tttagcagtt acttggaaga acgaacgcaa gttactttgt      2760
     ttaatggtgt actatctccg gaagttgcag ttgacctggg tgttccacag ggcagtgttt      2820
     tgggaccgtt gttgtttata ttgtatatga acgatatcaa aaaagcgtta caaagatctg      2880
     aagtgaacct gtttgctgac gatactgtaa tttacgtcac tggaagctgt cgcgaagaat      2940
     gctgtgaaat cctgaatgct gagctgaatg tgtttgctga ctggttaaaa aggaagaagc      3000
     tcaagttgaa cgtgtcgaaa accaagtgta tgctgataac taaccaacgg agggacgaca      3060
     ctgacggaac agtttacata gatggcgaag tagtcgaaag ggttgatgtg attaaatatc      3120
     tgggtgttat gttagacaac aagttgaact ttgatgagca catcaactat acgattagga      3180
     aagccgctag gaaactgggt atcatgtaca ggttgaacaa gtacctttct tttgataaca      3240
     agttgatgat ctataacaca cttattgctc cccatttcga ctactgtgcc tctattttgt      3300
     ttaccgcaac acagcaacaa cagaaacgta tgcaacttct tcagaacaag gtgatgcgtt      3360
     tgatattagg atgtgaaaga ctaacaccaa gaagttttat gcttgactgc ctacgatgga      3420
     tgtcagttag acaacgtgta gaatacaata ctttagtttt tatttttaga ctgacaaaag      3480
     gaatggctcc acaatacttg acggatacaa tagtttatgg aagtgatgtt catcaacatt      3540
     ttactagaca ggcgagagaa attaggttgc tcaacttcaa aatgacgtct acgcagaatt      3600
     cactttttta caaaggatat cgtttgttta atatgttacc tgaagcaaca agaaactcgg      3660
     acaatctacg tgattttaaa aagttttgta aatcttttgt aaggcaaaga ccactgttgt      3720
     aagtgactgc agaacattga ctgagggtgg ctgtgacaga gagtgtatgg tttaattgtt      3780
     tgtatgtttg gattattggt ttgtttgttt gctctcttaa tcggtgcacg tctcagtgaa      3840
     tgaatgaaaa atacgttgtt gggccgtata taagacatgc gtgtggaatt aatttaccag      3900
     tacccaatgt ttaaagcaac ctgacaagtg ttgaggatgg aaaaagagag acaaggatgg      3960
     gcatacacgg aagttgagta agatgatagg attgtctcca aaattatcga aagatatctg      4020
     ctcataatcc ttccatacta caaaagatgt gtatgggtaa gaggtgggcc atccagagaa      4080
     aaaaattaaa aattgtttac tttgaaaaat caaaat                                4116
//
ID   L2B-6_AAe   repbase;    DNA;    INV; 4215 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4215
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1411-1411 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   Closely related to CR1-1_AG and L2B-1_CP.
XX
FH   Key           Location/Qualifiers
FT   CDS           22..1218
FT                 /product="L2B-6_AAe_1p"
FT                 /translation="MKNAVYACDTCIALHEFDDTEEMQTKMNEVLHGVAKL
FT                 QRVLDFVEGFDVRVRKIVREELVESGKIPVTPTCDPVRYNLRSTSKAKREN
FT                 GRMENRNNPPVNGTVVNNNINYSFADVVKTSKPVVLSKDTPKTLNSKNEEN
FT                 NNKAIHAVSPKKPNSRIVIKPKTGKNASETKKLLSKKVKPSNFRVKDIYTR
FT                 KDGSILVDVQDHSTMLKLKETIEKELCDHCEVEVSDTLKPTLKIVGINEEM
FT                 NEDELKTTLIENNEVMENVKHFKVKSIVAKDKENNDNFDAIIEVDAITFHK
FT                 VLKQKKIMCGWERCQVVDALDVVQCYKCCGFNHKSVKCTARKEACPRCAGE
FT                 HLIRECNSSEVKCINCERSKLNGDKDADSNHCAWSERCPLYMRMKERKRQM
FT                 IDYSV"
FT   CDS           1222..4026
FT                 /product="L2B-6_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSSVQVLYANVAICKHIEEIRLLLKRRRPVVTILTET
FT                 HLTGDHDINQLEVQGYSMINCPSTSRHTGGVTMFVRSGVKLKVISNESVAG
FT                 NWFLAIDVSTGNFSGIYGAVYHSPNASDAAFLQHLEDSWLPNVFDDERTNL
FT                 IIGDFNINWMKVGDRRELKNVMDSVSLRQIIQFPTRVSIRSSTMIDLAFTN
FT                 DDRITAIELIDDKLSDHETIGLKFNITDQLRQSTKISVKSWRQYSKEKFCS
FT                 KLQHKLRDFNLLDSTDESAALLGCSLESAVNEMIIDKEIEIYDDCNWYNGK
FT                 LHRMKESRDRAYAKFRRTGDATDWRLYQRLRNKYVIEIRKTKAEYISKDLQ
FT                 ECQGDSKKVWKVLKKMMKPIRNRDPGVEFENASDEIDVTVKSNKLNEFFVE
FT                 SIKDIHNSIPDVPIVEGNVELPQIGVVEWNVFHEISMTNLEKVVNGLKVCG
FT                 GVNNLSTKVFWDGFQTIKNVFLCVINKSLMRGEFPSSWKKSLVVPLPKVAQ
FT                 SKRPEDRRPINMLPLYEKVLELVVKEQLCEFLENKNILINEQSGFRRNHSC
FT                 ETALNLLLLKWKRAIESKKVILAVFIDLKRAFETIDRTKLLGVLFKIGVRG
FT                 SVLKWFESYLTGRQQTTSYDGRESAAIDVELGVPQGSVLGPLLFIIYMNDI
FT                 KEIMTNGEVNMFADDTVIFIIANDFVEAYNALEAELLRVSNWLKSKKLLLN
FT                 VKKTKYLVITNKIKEGNIQPLHIDGQEIERVDNLKYLGVILDDKLSFNDHV
FT                 DYTIRKAAQKLGVICRINSFLDVGSKIMLYKAIVASHFEYCPSVLFLANRR
FT                 QKRRMQKIQNKSMRLILGCHRTTSSATMRECLQWMNVEERIIVRTLEFVFK
FT                 IKNQLLPTYLTENIQYGTDIHNYNTRAASDLRLPNFKKTGTQNCLFFKGFQ
FT                 LFNRLPTEVKQANSIYSFKRMCIRCVKDGLI"
XX
SQ   Sequence 4215 BP; 1547 A; 625 C; 938 G; 1104 T; 1 other;
     gagctagacg tacttcggaa gatgaagaat gctgtatacg catgtgatac gtgtattgcg        60
     ttgcacgagt ttgatgatac agaagagatg caaactaaaa tgaatgaagt gttgcatggt       120
     gtagcgaaac tacagagagt actcgatttt gttgaaggct ttgatgttag ggtgcgcaaa       180
     attgttagag aagaattagt cgaaagcggg aaaattcctg taactcctac ttgtgatcct       240
     gtccggtata atttgcggtc gacaagtaag gctaagcggg aaaatggaag gatggaaaat       300
     agaaataatc cgccagtaaa cggtactgtg gtgaataaca atattaatta ttcttttgct       360
     gacgttgtga aaactagtaa gcctgtggta ttatcgaaag atactcccaa gacgttgaat       420
     tccaaaaatg aagaaaataa taataaagct attcatgctg tatcaccaaa gaaaccaaac       480
     tcaagaatag taatcaaacc gaaaactggt aaaaatgcga gtgaaacaaa aaagttgctt       540
     agcaagaaag tcaagccatc aaactttagg gtcaaagata tttatacacg gaaagatggt       600
     agtattcttg tagatgtaca ggatcactcc acgatgttga agttaaagga gacgatagaa       660
     aaagaattgt gtgatcactg tgaagtcgaa gtgagcgata ctttaaaacc aacattgaag       720
     atagtgggga tcaatgaaga aatgaacgaa gacgaactca aaacaacgtt gatcgaaaat       780
     aatgaagtta tggaaaacgt gaagcatttc aaggtaaaaa gtattgttgc aaaagataaa       840
     gaaaataatg ataactttga tgcaattatt gaggttgatg cgatcacttt tcacaaggtc       900
     ctgaaacaaa agaaaattat gtgtgggtgg gagcgatgcc aagtggtaga cgccttagat       960
     gttgttcaat gttacaaatg ctgtggattt aatcataaat ctgtaaaatg tacggcgaga      1020
     aaagaagctt gtccacgttg tgctggtgaa catttgataa gagagtgcaa ttcttctgag      1080
     gtgaagtgca ttaactgcga gagatcaaaa ttgaatggtg acaaagatgc ggattctaat      1140
     cattgtgcgt ggagtgagcg ttgtccgctg tatatgagaa tgaaggagcg caaaaggcaa      1200
     atgattgact atagtgtata gcaatcatcg gtacaggtgt tgtatgcgaa tgtagcgata      1260
     tgcaaacaca ttgaagagat aaggttattg ttgaaaagac gaagacccgt agtgactata      1320
     ttaacagaaa cgcatctgac aggtgatcat gatattaatc aattagaagt gcaaggatat      1380
     tctatgataa attgtccgtc aacatcacgg cacactgggg gagtaactat gtttgtgaga      1440
     tctggagtca aactaaaagt gatttcaaac gagtcagttg ccggtaattg gtttctcgcg      1500
     attgatgtat cgactggaaa tttttctggg atttatggtg cagtatatca ctcaccgaat      1560
     gcaagtgatg ccgcatttct acagcatctt gaagactcgt ggctgccgaa cgtatttgac      1620
     gacgaaagaa caaacttgat aattggagat tttaatatta actggatgaa ggtaggtgac      1680
     agacgtgagc taaaaaatgt aatggattct gtgtcattga gacaaattat acaattcccc      1740
     actagagtaa gtattagaag tagtactatg attgacctgg cattcacgaa tgatgataga      1800
     ataactgcta ttgaattgat agatgacaaa ttatctgacc atgaaacaat tggactcaaa      1860
     ttcaacataa cggaccagct aagacagtcg acaaaaatta gcgttaaaag ctggagacaa      1920
     tattccaagg aaaaattttg tagcaaactg caacacaaat tgcgtgattt caatttgctt      1980
     gattcaactg acgaaagtgc agcacttctg ggatgttctt tggagtctgc agtgaatgaa      2040
     atgataatag ataaagagat tgaaatatat gacgattgca attggtacaa tggaaagcta      2100
     catagaatga aggaatcaag ggacagggca tatgccaaat ttagaaggac aggtgacgcc      2160
     acagactgga gattgtatca aagattgaga aataagtacg ttatagaaat ccgtaaaacg      2220
     aaagctgaat acataagcaa agacttacag gaatgtcaag gtgactcgaa aaaagtatgg      2280
     aaagttttga aaaagatgat gaaacctatc agaaatcgtg atccaggagt agaatttgaa      2340
     aacgccagcg atgaaatcga cgtaacagtg aaatcaaaca aattgaatga atttttcgtt      2400
     gagagcatca aagatatcca taacagtatt ccagatgtac caatagttga aggaaacgtt      2460
     gagttgcccc aaattggagt tgtagagtgg aacgtatttc atgaaataag catgaccaat      2520
     ttggaaaaag tagtaaatgg gttaaaggtt tgcggaggtg ttaataatct aagcacaaaa      2580
     gtcttttggg atggatttca aacaataaag aatgtatttt tatgtgttat aaataagtcg      2640
     ttgatgcggg gagaatttcc ttcatcttgg aaaaaatctt tggttgtgcc tttaccaaaa      2700
     gtggctcaat caaagagacc agaagatcgt aggcctatca acatgttgcc actatacgaa      2760
     aaagtgctag agttagtcgt aaaagaacag ctatgcgagt tcctagagaa taaaaacatt      2820
     ttgattaatg aacaatctgg cttcagaaga aatcactcgt gtgaaacagc actcaattta      2880
     ttattattga agtggaaacg agcaattgaa agcaaaaaag tgatcctagc agtgtttata      2940
     gacttaaagc gagcatttga aactattgat aggactaaat tgttaggggt attgttcaag      3000
     attggcgtga gaggttcagt cttgaaatgg ttcgaaagct atttgaccgg cagacagcaa      3060
     acaacctcgt atgatggaag agaatcagca gccattgatg tggagttggg agttcctcaa      3120
     ggaagtgtat taggaccctt gttatttatt atttatatga atgatattaa ggagattatg      3180
     acgaacggtg aagtaaacat gtttgctgat gacacagtaa tattcatcat cgctaatgat      3240
     tttgttgagg cgtataatgc acttgaagca gaactgctca gagtaagcaa ttggctgaaa      3300
     tctaaaaagc ttttgctcaa cgttaagaaa acaaaatatt tagtcataac taacaaaatt      3360
     aaggaaggaa atattcaacc gctacatatc gatggacaag aaatagaaag agtggataac      3420
     ttaaaatact taggagtaat tcttgacgat aagctttcat tcaatgatca cgtggactac      3480
     acaataagaa aagctgcaca aaagctaggt gttatttgca gaattaattc atttctagat      3540
     gtcggatcaa aaatcatgct atataaagca atcgtggcgt cacattttga atactgtccg      3600
     tctgtgctgt tccttgccaa cagaagacaa aaacgtcgaa tgcagaaaat acagaacaag      3660
     tctatgcgac ttatactagg gtgtcatcgt acaacttctt cagctactat gcgtgagtgt      3720
     ctccaatgga tgaatgtcga ggagaggatc attgtaagaa cattagaatt cgtattcaaa      3780
     attaagaatc aattactacc aacgtacttg acagaaaata ttcaatatgg aacggatata      3840
     cataattata acacaagagc agcatcggat ctacgactac cgaactttaa gaaaactgga      3900
     actcaaaact gtctcttttt caaaggattc caactcttca accgactacc taccgaagta      3960
     aagcaggcaa acagcattta ttcattcaag agaatgtgta taagatgtgt caaagatgga      4020
     ttgatatgaa tcatgatgat ggacatacgc gggagcaaga atgaaagtta aaaagaaaat      4080
     gaagaaacat gaattaaaaa ccaaatatca ctatgataac tcgtccaata agcctcccaa      4140
     ctacwaacga agcgtatggg gtggaggtgg gaccaaatac ggcccaatgg gaccatcaga      4200
     aaaaaaaaaa aaaaa                                                       4215
//
ID   L2B-6_CQ    repbase;    DNA;    INV; 2611 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2611
RA   Kojima K.K. and Jurka J.;
RT   "L2B non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 147-147 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           7..2547
FT                 /product="L2B-6_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLAIEIHHQQFNGIFGGVYHSPSSSDRDFLDSFENWL
FT                 QQVMADDKTNVISGDFNICWNNEGYSRDLKNIADAVGLEQKVLEHTRISVR
FT                 SRTTIDLVFANVEDCTVKVLADWRITDHETLGINVEGVCKINMPEKKTEYT
FT                 CWRKYSKERLQNTLLCDETLWRNNLPVDEKAQQFSRALATAVGQLTETRMR
FT                 RSADTKRWFTPHLQAVKLKRDEAYKIFKTTNXAEHWERYKQFRNEYVRELQ
FT                 KAKNSSVQQEIQSCSGDSKKLWRCLKDLIKPGGTPEKEIIFDDKTEPCSDE
FT                 ETANRLNHYFIKSVKEIHDSIPTVNQPQQDPLPTVRTLDISEFSQFQPISM
FT                 EKLRKIVAAMKNCAGVENISKRVLEDAMDVVGDKLLDIINSSLNLGVFPQE
FT                 WKKSVVVPIPKVPNSTRAEDRRPINMLPIYEKVLETVVREQLVEYVDRAGL
FT                 LIEEQSGFRKQHSCESALNLLMLKWKQSIENNKFILTVFVDLKRAFETIDR
FT                 RKLLEVLRRNRIKGDVWRWFKSYLEYRTQITRYNNSVSEAEAVELGVPQGS
FT                 VLGPLLFILYINDLTKALRRACVNLFADDTVIYVAGDKLDECYEIMNNELA
FT                 VFADWLKWKKLKLNVSKTKYMVVTTRRSESNCTISVDGELVERVNAIKYLG
FT                 VMLDEKLSFAEHVDYTIRKAARKLGVLCRINRYLSFDNKIMVYKTLIAPHF
FT                 DYCASILFLATNQQRKRMQIVQSKAMRMILRCDRLTPRILMLDSLQWMSIR
FT                 QRVEYSTLVFIFKVVNGLAPQYLTKTVQCGRDVHRHFTRQAGDIRLLNFKK
FT                 SCTQNSLFYRGYNLFNMLPESTRATTNLREFKKLCKPFVRQRPLE"
XX
SQ   Sequence 2611 BP; 825 A; 492 C; 678 G; 615 T; 1 other;
     aattggatgc tggcgataga gattcaccat caacaattca acggtatttt tggaggagtg        60
     tatcattcac ctagcagcag cgacagggat ttcttggaca gctttgaaaa ctggcttcaa       120
     caagttatgg cggatgacaa aacgaatgtg ataagtggtg atttcaatat ctgctggaat       180
     aacgaaggct actcaaggga cctgaaaaac attgcggatg cagttggact agagcaaaaa       240
     gtattggaac acactcggat cagtgtcaga agccgcacta ctattgactt ggtgtttgca       300
     aacgttgaag actgtactgt aaaagtacta gcagattgga gaattacaga tcacgagaca       360
     ttgggaatca acgtggaagg agtttgtaaa ataaacatgc cggagaagaa aacggagtac       420
     acatgctgga gaaagtattc taaggaacgg ctgcaaaaca ctttattgtg tgatgagacc       480
     ctgtggagaa acaatttgcc ggtggatgaa aaagcacagc agtttagcag agctctagca       540
     acagcagtag gacaacttac ggaaacacgt atgcgacgct cagcagacac caaacggtgg       600
     tttactccac acttacaagc ggtgaaacta aagcgagacg aagcatacaa aattttcaag       660
     acaacgaacw gcgcggaaca ctgggaacgg tacaaacaat tccggaatga gtacgtgcga       720
     gagctgcaaa aagcgaaaaa tagttcggtt cagcaagaga ttcagagctg cagtggagat       780
     tcaaagaagt tatggagatg tttaaaagat ttgataaaac ctggaggaac gcccgaaaag       840
     gaaattatct tcgacgacaa aactgagccg tgcagcgatg aagagacggc gaacagactg       900
     aaccattact tcatcaagag tgtgaaggag atacacgatt ccatcccgac tgtgaatcaa       960
     cctcagcaag acccgttacc aactgtgcgt acgctggaca tctcggaatt cagccagttc      1020
     caacccattt ccatggaaaa gcttcgaaag attgtagcag cgatgaaaaa ctgtgcagga      1080
     gtcgagaaca tctcgaaacg tgtgttggag gacgctatgg atgttgtagg agataagctg      1140
     ctcgatatta tcaacagttc attgaacctg ggtgttttcc ctcaagagtg gaagaaatct      1200
     gtggtggtgc cgattccgaa ggtaccgaac tcgacgcgtg cagaagaccg gagaccaata      1260
     aacatgctgc caatctacga gaaggttttg gagacggttg taagggagca gctggtggag      1320
     tacgttgatc gggccggatt acttatcgag gaacaatcag gattcagaaa gcagcactcg      1380
     tgtgaatcag cccttaacct gttgatgctg aagtggaagc agtctatcga gaacaataag      1440
     tttatcctga cggtgtttgt tgacttgaaa cgtgcttttg aaactattga tcggcggaag      1500
     ttgttggaag tgttgcggcg aaacaggatt aaaggggacg tttggaggtg gtttaaaagc      1560
     tatctggagt acagaaccca aattacacgg tataacaact cagtatcaga agcagaagca      1620
     gtagagttgg gtgttccaca agggagcgtg ctgggaccac tactgtttat cctatacata      1680
     aacgacctga cgaaagcact taggcgggca tgtgttaacc tgtttgctga cgacaccgtg      1740
     atatatgttg ctggagacaa actagacgag tgctacgaga tcatgaataa cgagctggca      1800
     gtgttcgcgg attggctgaa atggaagaag ctgaaactga acgtcagcaa aacaaaatac      1860
     atggtggtga caacaaggag gagtgaaagt aactgtacaa tatctgtcga cggtgaattg      1920
     gtcgagcggg ttaatgccat caagtacctt ggtgtaatgt tggacgaaaa gctctctttt      1980
     gcggaacacg tggactacac tattcggaaa gctgctcgga agttgggtgt cctctgcaga      2040
     atcaatcgct acctatcgtt tgacaacaaa attatggtct acaaaacgct gattgcacca      2100
     cattttgact actgcgcttc aattctgttt cttgccacga accagcaacg gaagaggatg      2160
     cagatcgtac agagtaaagc tatgaggatg atacttagat gtgacagatt gacaccaaga      2220
     attttgatgc ttgactctct gcagtggatg tcgattaggc aacgtgtgga gtatagtaca      2280
     ttagtgttta tttttaaagt tgttaacgga ttggcaccac aatacttgac aaaaactgta      2340
     cagtgtggaa gagacgttca tcgacatttt actaggcaag caggagatat cagattgctg      2400
     aattttaaga aatcgtgcac acagaactcg ctattctaca gaggatacaa cttgttcaac      2460
     atgctaccgg agtcaacgag agcgacaact aatcttcgtg agttcaagaa actgtgtaaa      2520
     ccttttgtaa ggcagagacc tttggaatga agtggcatcc cataggtgtg gctgtgaagg      2580
     agagcatgtc atgacggtcg gcttctctac a                                     2611
//
ID   L2B-7_AAe   repbase;    DNA;    INV; 4443 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An L2B non-LTR retrotransposon from Aedes aegypti.
XX
KW   L2B; Non-LTR Retrotransposon; Transposable Element; L2B-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4443
RA   Kojima K.K. and Jurka J.;
RT   "L2B clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1412-1412 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity. Closely related to CR1-1_AG and L2B-1_CP.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1424
FT                 /product="L2B-7_AAe_1p"
FT                 /translation="MYVCDTCLALHEYDDRMNIEKKIDVMLEKIGEMEQKF
FT                 SFFKDFDGKVRALFKEELNKLCTSTNVSGEISLSDTPRYNLRSNKNKTGSE
FT                 NTGRNVENTPKSGIVNEGMVSYSDVVKNNVDSVVESSLSAGQKGEWRAVSR
FT                 KVYRSAGKTPMSDMRREKSSTNIVVENHKVNGRNAIPGSSSSFATKNRMND
FT                 SNESKKKPNPRVIIKPRNSDDQRNTKKVLSEKLKTCSVKVNDVITRHDGAV
FT                 IVELNDENSSETFKQAVKSAMGDGYEVEMSQPFRPMVKLLGITEELNKDEL
FT                 KRSLLDHNEILNDVKHLKVLKIYSVNGLFNAIIEVDAYTYGKLMERGKLIC
FT                 EWDRCRVVDGIDVLRCYKCCAFNHKGADCSARGITCPRCAGSHSIQQCDSV
FT                 EYKCANCIRMLKSGRQGICSSLVDKKYFVPTMLVFICVDHAVWSEQCPVYR
FT                 RMKDKKKEKIDFEA"
FT   CDS           1428..4232
FT                 /product="L2B-7_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="QSKSDILYANCAISSHIEEIRLIIRQHNPNIFVITET
FT                 HLTDKHNVNLFDIKGYDMINCLSNSSHTGGVTFYVKNNIKWVVHSNESCSG
FT                 NWFLTIYVSVGVMKGMYGGLYHSPNANDATFLMYLEEEWLPRVLEHNGRIT
FT                 VIGDFNINWLENMDRRELKNLMDSLSLHQFISFPTRVNHRSNTMIDLLFSN
FT                 YDIPQVTELPSDKISDHATISVLVSSIADKSTPIRTKIRSWKKYSKVRLQS
FT                 ELRWKLRDFHQCSNIDESANMLAEALEVTVNNMVELKEITVTETAPWYTSS
FT                 LHGMKLCRDEAHFKFRTSRSQEDWKEYQRKRNNYVNAIRDAKKTAIQQELR
FT                 ASQSDSKKLWKSLKKLINPAKGTDNGVKFSDIDEDLGDKAKADKLNEYFID
FT                 SVKKIHDSILECGSSDTGNDNLNPNYRWSTFKPIDMSRLRNTVLNLKKCGG
FT                 INNVSTSVLIDAFEAIKHEFLILINKSLSRGEFPSGWKKSLVVPLPKVPNS
FT                 QKPEDRRPINMLPVYEKVLEVLVKEDLMDFVNKYDILLPEQSGFRKQHSCE
FT                 TALNLLLFKWKKALEDKKVIMTIFLDLKRAFETIDRKKLINTLGKLGIGGK
FT                 VIEWFRSYLTMRMQCTLYRGQESECRRVDLGVPQGSVLGPILFILYINDVK
FT                 DVVTLGNLNLFADDTVLFVIADSIEAAYAVMRVELNKLTKWLKIKKLKLNV
FT                 TKTKYMVITNKSRNGYLDTLSIDGEVVEQVKLVKYLGVIVDEKLNFNEHID
FT                 YIIRKAASKYGMLCKINKYLTFDNKIMIYKTLIAPHFEYCASILFLASKRQ
FT                 MRRMQTVQNRTMRLILGCDRKTSSQLMREVLQWMSVSERITFRTLTLVFKI
FT                 RNGLTPKYLTENVQYGSDVHRYATRRANDFRLPNLTMTGTQNSLFFKGFRL
FT                 FNSLPDEVKYETNENRFKRKCKPLIKNLMET"
XX
SQ   Sequence 4443 BP; 1634 A; 625 C; 966 G; 1218 T; 0 other;
     gtgtcaacga agatgagtgg aaggtgctaa aaggaataaa aaatgcgatg tatgtttgtg        60
     atacgtgttt ggctttacac gaatatgatg atcgtatgaa tattgagaaa aaaattgacg       120
     ttatgctgga aaaaattggg gagatggaac aaaagtttag tttcttcaaa gacttcgacg       180
     gaaaagtccg agcactgttt aaagaagaac taaataaatt gtgtacatca acgaatgtga       240
     gtggtgaaat ctcattgagt gatacaccgc gatacaattt gcgctcaaat aaaaacaaaa       300
     ctgggtcaga gaacactggg agaaatgtag aaaatacgcc caaaagtgga atcgtaaacg       360
     agggcatggt ttcatatagt gacgttgtta aaaataatgt agattctgtg gttgaatcat       420
     ctttaagtgc cggtcaaaaa ggtgaatgga gggctgttag taggaaggtt tatcgaagtg       480
     cgggtaaaac acccatgtcg gatatgcgac gtgaaaaatc aagtacgaat atcgttgtgg       540
     agaatcacaa agtgaatggt cgcaatgcaa ttccaggatc atcaagctct tttgcaacga       600
     aaaatcgtat gaatgattca aatgaatcga aaaagaaacc aaacccgaga gtgattatca       660
     aaccgcgtaa ttcggacgat caaagaaata cgaagaaagt gttgagcgaa aaacttaaga       720
     cgtgttccgt aaaagtcaat gacgtaatca ctcgtcacga tggtgcggta attgttgagt       780
     taaacgatga aaattcaagt gaaacgttca agcaagctgt aaaaagcgct atgggagacg       840
     gatatgaggt agaaatgtct cagccattta gacctatggt aaaattacta ggtataactg       900
     aagagcttaa taaagatgaa cttaagagat ctctcttgga tcataacgaa atattgaatg       960
     atgtgaagca cctaaaagtg ttgaaaattt attcagtcaa tgggctgttc aatgctatta      1020
     tcgaagttga tgcttataca tatggtaaac ttatggagcg cggaaaatta atctgtgaat      1080
     gggatcgttg tcgtgttgtc gatggcattg atgtgcttag gtgttataag tgttgtgcat      1140
     tcaatcataa aggagctgat tgtagtgcta gagggataac atgtccccga tgtgctggtt      1200
     ctcattcaat tcaacaatgt gattctgtag agtataaatg tgctaactgt atcagaatgt      1260
     tgaaatcagg caggcagggt atctgttcat ctttagtcga taaaaaatat tttgtgccaa      1320
     caatgttagt gtttatctgt gtggatcatg ctgtctggag tgagcaatgt ccagtgtatc      1380
     gaagaatgaa agataaaaag aaagaaaaga tagattttga agcatagcaa tcgaaaagtg      1440
     atattttgta tgcaaattgt gctattagta gtcacattga agaaataaga ttgataatac      1500
     gacaacacaa tccaaatatt tttgtcatta ctgagactca cttgacagat aaacataatg      1560
     tgaatttgtt tgatataaag ggatatgata tgatcaattg cttgtctaat tcgagccata      1620
     ctggtggagt gacattttat gtaaaaaata atattaaatg ggttgtgcat tctaatgaat      1680
     cgtgtagtgg aaattggttt ttgaccattt atgtatctgt tggagttatg aaaggtatgt      1740
     atggtggttt atatcattca cctaatgcta atgatgcaac gtttctcatg taccttgaag      1800
     aggaatggtt gcccagggta cttgaacata atggtagaat cacagtcatt ggtgacttta      1860
     acatcaactg gttagaaaat atggatagaa gagaacttaa aaatctaatg gactcattat      1920
     cactgcatca gtttataagt tttcctacaa gagtaaacca tagaagtaat acaatgattg      1980
     accttttgtt tagtaattac gatataccac aagtgacgga attaccatca gacaaaatat      2040
     ctgaccatgc aacaataagt gttttagtga gtagcatagc tgacaaatcg acacctatta      2100
     gaactaaaat cagaagttgg aaaaaatatt ctaaagtacg tttgcaatcc gagctccgtt      2160
     ggaaattgag agattttcat caatgtagta atattgacga gtctgcaaac atgttggctg      2220
     aagcgttaga agttactgta aataatatgg tagagctgaa agagattact gttactgaga      2280
     cagcaccgtg gtacacgagt tcattacatg ggatgaaatt gtgtagggac gaagctcatt      2340
     ttaaatttag aacatcgcgt agtcaagaag attggaaaga ataccagaga aaaagaaata      2400
     attatgtcaa tgcaattcgt gatgctaaga agacggctat acaacaggag ctaagagcaa      2460
     gtcaaagtga ctctaaaaag ttatggaaat ctttgaaaaa attaataaac ccagctaaag      2520
     gcacggataa tggtgtaaaa ttttcagata ttgatgaaga tcttggtgac aaagcaaaag      2580
     ctgataaatt aaatgaatac tttattgata gtgtcaagaa gattcacgac agtattctag      2640
     agtgtggatc aagtgatact ggaaacgaca atctaaatcc aaattatagg tggtctactt      2700
     ttaaaccaat cgatatgtca cgactgagaa acacagtact aaatctgaaa aaatgtggtg      2760
     gaatcaataa cgtcagtaca tcagtattaa ttgatgcatt cgaagcaatc aaacatgagt      2820
     ttctcatcct cattaacaaa tcccttagca gaggagagtt cccatcggga tggaaaaaat      2880
     cattagttgt accactgcca aaagttccca attctcaaaa acccgaggac agaagaccaa      2940
     taaacatgtt accagtatat gaaaaggttt tggaggtgtt agtgaaggaa gacttgatgg      3000
     attttgtgaa caaatatgac attttgttgc cagagcaatc aggtttcaga aaacaacatt      3060
     cttgtgaaac ggctttgaat ttgctactgt tcaaatggaa aaaagctcta gaggataaga      3120
     aagttattat gacgatattt ttagatttaa aaagagcctt cgaaacaatt gacaggaaaa      3180
     aattgatcaa tactctagga aaactaggaa ttggtggaaa ggttattgaa tggtttagaa      3240
     gttatttgac tatgagaatg cagtgtactt tatatagagg acaggaatcg gagtgcagaa      3300
     gagttgacct aggggttcca caaggtagcg tgctagggcc gattcttttt attttataca      3360
     taaacgatgt caaggatgta gtaacgttgg gtaatttaaa tttgtttgct gatgatacag      3420
     tattgtttgt tattgcagac agcattgaag cagcatatgc ggtaatgagg gttgaactaa      3480
     ataagttaac gaaatggttg aagatcaaga agttgaagtt aaatgtaaca aaaactaagt      3540
     atatggtaat aacaaacaaa tctaggaacg gatatttgga tacattgtct attgatggtg      3600
     aggttgtgga gcaagtaaaa ctggtgaaat acttaggagt tatagttgac gagaaactca      3660
     atttcaacga acatattgac tacataatac gtaaagcagc atcaaagtat gggatgttat      3720
     gtaaaatcaa caaatatctg acattcgata acaaaataat gatatataaa actttaatcg      3780
     ccccacattt cgaatactgc gcttcgatac tgtttctggc ttcaaaacga caaatgagaa      3840
     ggatgcaaac tgtgcagaac cggacaatga gattaatatt aggatgtgac cgaaagactt      3900
     caagtcaact aatgagagaa gttctacaat ggatgtcagt atcagagaga ataaccttcc      3960
     gaacactcac acttgttttt aagataagaa atggattgac accgaaatat ttgacagaga      4020
     acgtgcaata cggatcagac gtgcatcgat atgcgacacg aagagcaaat gactttcgac      4080
     taccaaattt gacaatgacg ggaacacaaa attcattatt tttcaaagga tttagacttt      4140
     tcaactcact tccagatgaa gtaaagtatg agactaatga gaatcgattc aagcggaaat      4200
     gtaaaccatt aataaaaaat ctgatggaaa cttaagaaaa caagacgatg gacatacgcg      4260
     ggagccagac gaataaaaaa aacggataga agacgatgac acatgaggac actacgaata      4320
     aaatatcaaa ttgataaacc aagtcttgta agcctcccct ttgcaaaaaa gcgtatgggg      4380
     tggaggagga gttcgaaagt taaaactcct atgggaccat caagaaaaaa aaaaaaaaaa      4440
     aaa                                                                    4443
//
ID   L2_Ele3     repbase;    DNA;    INV; 4926 BP.
XX
AC   .
XX
DT   19-OCT-2010 (Rel. 15.10, Created)
DT   19-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An L2 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   L2; Non-LTR Retrotransposon; Transposable Element; L2_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4926
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4926
RA   Kojima K.K. and Jurka J.;
RT   "L2 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (19-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 8
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           664..1893
FT                 /product="L2_Ele3_1p"
FT                 /translation="MHVRLAVVILCDRIGAFCAVGYAEAFSIPDALALMRR
FT                 ISKLGPPRRTPVVLRVMSNQFNPSVMDREALIIKTMRDLLLRVDSMDLRIG
FT                 QFGENLKTLNSVLSLTTSARRDSDVSTRVHRFLSGTTVHDHTDFYNSINRL
FT                 NLDSSLHSNAANNTIVFPEEDQGAMLDDSVSNAPVEPRGVRPKTYASVVSK
FT                 TTANVTNSASXVTTANIFATTAVTSVSPATTANAISTTTTIANVMPPTTAT
FT                 SATAYINATLNPAKATGAPTDTIPAFPIMRTTLPAGDSHPTSHASVSNGVP
FT                 QTNCRLKVVSKHRQTRNRESTEEQLKSFYVTPFTIEQTEDDIIEYLRETIN
FT                 TNESIVKCVKLVPRNKNINELSFISFKISVSEDLVSLIGDSFYWPEGVEIR
FT                 EFQSKNEMRSNQMLSM"
FT   CDS           1815..4814
FT                 /product="L2_Ele3_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="FLLARRCRNTRISVKKRDAIKSNVVDVIHVSDFNANV
FT                 PLNSNFTLNSVLPHPAQTKEVIYEKNINMHYFNYLQTKTFLEKFSRIFLKI
FT                 GVHNARSLSNNIDNYRTFLEKSEINILAIVESWLKPSITNKSVELNGYKIV
FT                 RSDRCNSKKSRGGGVAFYLKSNTKFSILRKSGKDSDVDYLFIKLNLANLVC
FT                 GVVYKPPDVNISKLDDIFNIVSEISSTEPNILVMGDFNINILNYNSPQTRR
FT                 LIDQLSSLSLKLIDTWPTCHKSGCQPSVIDLLMGNCTGNICNAYQSSLGGI
FT                 SDHDFICVDYRFKISKSKPEVYWARDYHKINNETFLSDLRDCSFDRLYYCS
FT                 NVNEKLNSFNEIIFSVLDKHAPLKKKTARDPVSPWIDNHVRRAFKNRSEAY
FT                 ECWKRDKSNRGKWNNFKCLRNLANREIKRKKHEYFTSKLNIDLPAKQLWNN
FT                 IKRLGLKQVNTKAGGGDVTAASLSTYFISHFVPETFVENPGGIDAQSRFSF
FT                 RGVTSNEILTEFTLASCDSVGNDLIPLNVLKMSLSVTLPYITDIINCCITT
FT                 SEFPEIWKVAKVVPIGKTDNPTVESEYRPISILCALSKIFESIVSKQLNEY
FT                 LVSNKLLSPLQSGYRKSCSTITALIKVENDVREALDKKMITVMALLDFSKA
FT                 FDTISHHLLCNKLKFRFKMDSLSVNLIYSYLSGRSQYVDFNNTMSDKISVP
FT                 CGVPQGSILGPLLFSMYINDLPLVLSFCKFHLYADDCQLYISESIXNLNDS
FT                 VQKINNDIQNILNWCVHNGLILNAKKTQTIIFSNKRMKVINPPKVKVDNDF
FT                 IEYSDVVKNLGILMDCKLTWNDQVNAVCCKVYKALHSLVALRKCTPQHTRF
FT                 QLARALIVPLFDYGDILFSLVSNNNFRKLNHAFNTITRYVFNLRKFDHISR
FT                 YVNLLLGRSFNNHLSLRVCTQTFKILNNPPSYLENFFSYTRSPRTPLLVVP
FT                 RSASGNLKLSFRHRAISAWNKLPRNCRSARNYSSFKNNIELFYNS"
XX
SQ   Sequence 4926 BP; 1520 A; 969 C; 880 G; 1555 T; 2 other;
     accaacacag tcaactcagt tataatcacg cttctgatat ctccgaacta attatcgata        60
     tttcgtctgt tgccggaccg cctgaaacat tttgtttttg gaatttgcca aagtattact       120
     cgcctatcaa aaagcaactg aaggtcaaac aaatgctatc aattccttag tgtaaaagtg       180
     cttcaaagat tgtgttttca ttctgggtag ccactctgga accgctgaaa agtaccgaaa       240
     attgaacaac ttgtgttagt ggcgctgagg tgatataatt gtacattcac gacgctcgta       300
     tctgcaatca cagttgacta gtactgatat tgctaaattt gttctgcttg tgcatttgca       360
     cgcttcatac aagcggtgct gttgtgttgg atagaggagc gtgtcttggt gcgttcggtg       420
     gtctcaaaag ccgaaacatc aattgatgtg catgatctgg ttcgacaccg gctttagcga       480
     acagtactat acagtggaac aataacagct gatttcggga aagcaacaca ttgcttggcg       540
     cagcttaata gtgtatgtac ttatatcatc gtagcaatac tactcttgtt tcttcttttg       600
     gttgggaaat tcaaatcccg tgtggacttt acttagggtg gggcatactt ttttgaatca       660
     tggatgcatg taaggcttgc ggtagtaatc ttgtgcgatc ggataggagc gttttgtgca       720
     gtgggttatg cggaagcgtt ttccatcccg gatgcgttgg ccttaatgcg acgaatttca       780
     aagcttggac cgccacgtcg gactcctgtg gttttgcgag tcatgtcgaa tcaattcaac       840
     cctagcgtga tggatcgtga agcgctcatt atcaagacca tgcgagacct tctactgcgc       900
     gtggattcga tggacttgag aattggacaa tttggcgaaa atctgaaaac actcaatagt       960
     gtactttcat tgacaacatc agcgcgacga gactcggacg tttcaacaag ggtacatcgt      1020
     ttcctctctg gtacaactgt tcacgatcat actgactttt acaacagtat taatcgtctg      1080
     aacctcgact catccctgca ctctaatgct gccaacaaca caatagtatt tcctgaggaa      1140
     gatcaaggtg ctatgttgga tgattcagtg tcaaatgctc ctgttgaacc aagaggtgtt      1200
     cgtcctaaaa cgtatgcatc tgtcgtttcc aagacgactg cgaacgttac caactctgcc      1260
     tctcntgtta ccaccgccaa catcttcgcc actaccgccg tcacctctgt ctctcctgct      1320
     accacagcta acgccatctc aactaccact accattgcca acgttatgcc accaaccacc      1380
     gccacctctg ccaccgccta catcaatgct accttaaacc ctgccaaagc tactggtgcc      1440
     ccaaccgata ctattcctgc attccctatc atgcgaacca cacttcctgc tggggatagt      1500
     catccaacgt cccatgcttc ggtttctaac ggtgtaccgc aaacgaactg ccgtttgaaa      1560
     gttgtcagca aacatcgtca aactcggaat cgtgaatcta ctgaggaaca acttaaatca      1620
     ttttacgtca ctccatttac cattgagcaa actgaagacg acatcattga atatctacgg      1680
     gaaaccatta acacaaacga gtccattgtg aaatgcgtta aacttgttcc gcgtaataag      1740
     aacattaacg aattgtcttt catatcattt aaaattagtg tttcagaaga tttagtttct      1800
     ttaattggtg atagttttta ttggccagaa ggtgtagaaa tacgcgaatt tcagtcaaaa      1860
     aacgagatgc gatcaaatca aatgttgtcg atgtaataca cgtaagtgac tttaatgcta      1920
     atgtaccttt gaattctaat tttacactga atagcgtcct cccacatcct gcacaaacta      1980
     aggaagttat ttacgagaaa aacattaata tgcattactt taactattta caaactaaaa      2040
     ctttccttga gaaattttct cgaatttttt taaaaattgg tgttcataat gccagaagtc      2100
     tgtcaaataa tattgacaat tatcgaacgt ttctagaaaa atctgaaatt aacattttag      2160
     caattgtaga atcttggctg aaaccatcca taacaaacaa atcagtcgaa ctgaatgggt      2220
     acaaaatagt aagatctgat cgctgcaaca gtaagaaatc acgtggtgga ggagtagcct      2280
     tttatttgaa atcaaatacc aaattctcta ttttacgcaa atctggaaaa gacagtgacg      2340
     tcgactatct gtttattaaa ctgaatctcg ctaatttagt gtgtggtgtt gtctacaaac      2400
     ctcccgatgt taacatatcc aagttggatg atatatttaa tattgtttct gaaatttctt      2460
     ccactgaacc aaatatatta gtgatgggtg acttcaatat caacattttg aactataatt      2520
     ctccacaaac tcgtagacta attgatcaat tgagttccct atctctaaaa ttaattgata      2580
     cttggccaac ttgtcataaa tctggttgtc aaccatcagt tattgattta ctaatgggta      2640
     actgtactgg taatatatgc aatgcttatc aatcgtctct gggtggtatt agtgaccatg      2700
     attttatctg tgtagactat agatttaaaa tttcaaagtc aaagcctgaa gtgtactggg      2760
     ctagagatta tcataaaata aataatgaga cttttctatc tgatttacgt gattgcagtt      2820
     tcgacagatt atactactgt tcaaatgtga atgagaaact taattctttt aacgaaatta      2880
     ttttttctgt tcttgataag cacgctcctc tgaagaaaaa aacggcaaga gatcccgtta      2940
     gcccttggat cgacaatcat gtccgtagag cttttaaaaa tcgcagtgaa gcatatgaat      3000
     gctggaaacg tgataaaagt aatcgtggaa aatggaataa cttcaaatgt ctacgtaatt      3060
     tagccaatag agaaatcaaa cgaaagaaac atgaatattt tacatcaaaa ctgaacattg      3120
     atttacctgc aaaacagtta tggaacaata ttaaacgttt aggccttaaa caagtcaata      3180
     ctaaagcggg tggcggtgat gtcactgctg catcgcttag tacttatttc atttcacatt      3240
     ttgttccaga aacttttgtt gaaaaccctg gtggtatcga tgctcaatca agattttcat      3300
     ttcgcggagt aacaagtaat gaaattctca ctgaattcac tttagcgtcg tgtgactctg      3360
     ttggcaatga tctcattcct ctgaatgttt tgaaaatgtc gttatcggta actttaccgt      3420
     acatcactga tattatcaac tgttgcataa caacctctga gttccctgag atttggaaag      3480
     tagcaaaagt tgtacctatt ggcaaaactg ataatccgac tgttgaaagt gaatatcgtc      3540
     ctattagcat tttgtgtgcg ctctcaaaga tatttgagtc tatagtctct aagcaactta      3600
     atgaatactt agtttctaac aaattactat ctccccttca atcaggatac cgaaaatctt      3660
     gcagcacaat tacagccctg atcaaggttg agaatgatgt gagagaagcg ctagataaaa      3720
     agatgataac tgttatggcc cttttagatt tcagtaaggc atttgataca attagccatc      3780
     atctgctttg caataaatta aagtttagat ttaaaatgga ttcattatca gtaaatttaa      3840
     tttattctta tttatcagga cgaagccaat atgttgattt taacaacacg atgtcggaca      3900
     aaatatcggt tccttgtggt gtaccccagg gatcgatact tgggcctctt ctgttctcta      3960
     tgtacattaa tgatttacct cttgttttgt ccttctgtaa gtttcatctt tatgctgatg      4020
     attgccaact atatatttct gaatctataw ataatttaaa tgatagtgtc caaaaaataa      4080
     acaatgatat tcaaaacatc ttgaactggt gtgtgcataa tggattaata ctgaatgcga      4140
     aaaaaactca aacgatcatc tttagcaaca aacgtatgaa agtaataaat cctccaaaag      4200
     taaaagtaga taatgatttc attgaatact ctgatgttgt taaaaactta ggaatactca      4260
     tggactgcaa attgacttgg aacgatcaag tcaacgctgt ttgttgcaaa gtgtataaag      4320
     ctctccattc actcgttgct ctcagaaagt gtactcctca acatactcga tttcaactag      4380
     cacgtgctct tattgtaccc ctgtttgatt atggggacat actgttttct ctagtttcta      4440
     acaacaactt tcgtaaactc aatcatgctt ttaacactat cacgcgatat gtttttaatc      4500
     ttcgaaaatt cgatcacatc tctagatatg tcaatctact gcttggtcgt agtttcaaca      4560
     atcatctaag tttaagggtt tgtacacaaa ctttcaaaat tttaaataat cctccatcat      4620
     accttgaaaa tttcttctcg tataccagat caccaagaac accattatta gttgtaccca      4680
     gaagtgcctc tggcaattta aaactttcgt tccggcaccg agcaattagt gcttggaata      4740
     aactacctag aaactgcagg agtgcgagga attattcttc attcaaaaat aatattgagc      4800
     tgttttataa tagttagtct agtacattag cattattgtc gcatagtagc atatactttg      4860
     aaaaccatta gaaggttatt tgtgttatta ttgttatgat gtaaataaat aaataaataa      4920
     aataaa                                                                 4926
//
ID   LCSAT1      repbase;    DNA;    INV; 190 BP.
XX
AC   X57585;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   L.cuprina satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; Highly repeated satellite DNA;
KW   LCSAT1; Repetitive sequence; satellite DNA.
XX
OS   Lucilia cuprina
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Oestroidea; Calliphoridae; Luciliinae; Lucilia.
XX
RN   [1]
RP   1-190
RA   Perkins H.;
RT   "LCSAT1.";
RL   Direct Submission to Genbank (31-JAN-1991)H. Perkins, Department
RL   of Biochemistry and Mol Biol, Australian National University, GPO
RL   Box 4, Canberra 2601, AUSTRALIA.
XX
RN   [2]
RP   1-190
RA   Perkins H., Bedo G.D. and Howells J.A.;
RT   "Characterization and chromosomal distribution of a tandemly
RT   repeated DNA sequence from the Australian sheep blowfly, Lucilia
RT   cuprina.";
RL   Chromosoma 101(5-6), 358-364 (1992).
XX
DR   GenBank; X57585; Positions       1     190.
XX
SQ   Sequence 190 BP; 54 A; 22 C; 37 G; 77 T; 0 other;
     gatcggtaga attatttttc caggtttaaa aaggcggtaa tctgaggttc cgatatggtt        60
     gtgaataact ttgacagttt tcatgctatg acagtcattt atgcatcatt ttaaagcatt       120
     atgattgcac tttaatttgg tatatcattt gtagcataat gtgtgttttt acaaattggt       180
     caatttgata                                                              190
//
ID   LDT1        repbase;    DNA;    INV; 5677 BP.
XX
AC   AF081103;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   01-JAN-2012 (Rel. 17.01, Last updated, Version 4)
XX
DE   Lymantria dispar non-LTR retrotransposon LDT1-4 putative
DE   gag-related protein and putative endonuclease/reverse
DE   transcriptase genes, complete cds.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; LDT1.
XX
NM   LDT1.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-5677
RA   Garner K.J. and Slavicek J.M.;
RT   "Identification of a non-LTR retrotransposon from the gypsy
RT   moth.";
RL   Insect Mol Biol 8(2), 231-242 (1999).
XX
DR   GenBank; AF081103; Positions       1    5677.
XX
FH   Key           Location/Qualifiers
FT   CDS           784..2394
FT                 /product="LDT1_1p"
FT                 /translation="MAEKTITIDALLAIPEIKAYIAQHFGAITILPPQPKP
FT                 ARSTAQPLEPELPAVGTAMETEPVLSSSNSSSSSSSESEDSSNEGSFIEVR
FT                 SRKRSKRTKNTKEAPSKTPKIKQTDSATTSAAAPLATTATAAPAPPVVSQA
FT                 ALTAAPPPTDSNTVAPPTVKKSLAPPPLYIRDKDKWLAISAWLNTNRISYK
FT                 SAKSTPQGIRVDLHSSADHRSVSKMLGNQQIPYHTYTLPEAKLLRAVIRNV
FT                 PREIETKEILESLKTQDLPVVEVHRMIRGRGRYPLNMILVCLTNNAEGKGI
FT                 FKIKTICGLSGVSVEPPHKNGNLAQCHKCQLYGQSSKNCFARPRCVKCLGD
FT                 HHTSQCERPKDISLCKEPPACVLCGEYGHPANYRGCPRAPRRLVRQPNTNG
FT                 KALYYNKTFVPAPLPTHNAWARPLLNSKEAFPTLPNRQPAAPPATSQLKPP
FT                 TTGPNQPTGGNPKPPQGAPIPIVVAKSAPPKAPQGLDPDLALVANFAAQIN
FT                 FTEIREIAAELRRNEGNNLALLNTAIKFSPTLERLGSLKFK"
FT   CDS           2399..5392
FT                 /product="LDT1_2p"
FT                 /translation="MDRYTPGRVKPRHLKIGTFNANSLTQQKDEVGTFLRE
FT                 HQLDILLVQETFLKPFNKDPRVANYNIVRNDRTTSPMGGTLIYYKRSLHCT
FT                 PVDPPPLMYIEASICRLALSGHQPITLVSAYLSPNREHSKQLVEKDLKALL
FT                 ELGGAVIIGGDLNAKNTSWSCQSSNKRGKTLELFADRLGFDVIAPIEPTHF
FT                 PFNVSHRPDILDIFLLKNINLRLCSIEVQHELDSDHRPVTLELASRTPGPS
FT                 GHNNERTKIATDWARLEKNLKSTSSVHLDQIPKDITSKEETSQAIDSLTSH
FT                 VQSIMDDCSRPVPDTSDRKWRLPDDVRDLLRRKNAATRAYDRYPTEDNRTR
FT                 LRSLQREVKQAIKKLRQSKWDAMIEELEPSHTAFWQLSRSLKKDIVSTLPP
FT                 LTRPNQPPAFMDDEKSECLADCLELQCTPSTLHPDAANHRFIADEVERRNT
FT                 LSRSLGNDSPDQPIPAVTTDEVESLVRGLKTRKAPGSDGISNKVIKLFPAH
FT                 LIILLCCIFNAALNNNIFPAQWKEAVVIGIHKPGKRRTEPSSYRPISLLRG
FT                 LGKIYERIVLSRLRTFAEANNLVPDAQFGFRAKHSCVQQVHRLVEYTSSQF
FT                 IMNRYTGVLFLDVAKAFDKVWHEGLIYKLYLLKIPHYLIHIIHDYLSHRSF
FT                 RYRVEGTLSTSHPIKAGVPQGSVLSPFLFTLYTSDMPKFNRVHKALYADDT
FT                 ALFCAGRSPTTVARTLQTAVTALANWFRNWRLEINPEKSQAVMFTRRTARS
FT                 YSIDSIPPLKIFNKPVTWTRQAKYLGVTLDDRLSFAPHIKKVRARAAFVMG
FT                 RLHCLLNSRSRMPLSSKVRLYTTCIRPIMTYASVVFAHVKPHRIHRLQTLQ
FT                 NRFMRRATGAPWFIRNVDLHIDLELPTIKQFMKRCSQSYFDSAMTHPNQLV
FT                 VGAASYRPSKISSIRRPRHVLDEEDDIITLAQQRAYTAREALTNKYPRFRP
FT                 RRRGAKPRRAKVTTKNVGTSTLPPATPQAEVRSPQGEPLGDVA"
XX
SQ   Sequence 5677 BP; 1508 A; 1744 C; 1226 G; 1199 T; 0 other;
     agactgaatg ctagtatata tacaccgcct tttgctgtct attcaatcat tccgcgtcgg        60
     agactcgtag cgcacggacg tgcgcctcgc tgctctccat ttcgccgcgc tcaccccgca       120
     cccgccccct gcggtcgtgc gttctcgctc cgtctcgctc gctctcgcag cgaaccacgc       180
     gtcgcgtcaa gccgccatct tgttcaacgt ctgtggccgt tcagtggccc gctccgggtg       240
     gccgtgtata cggttgtctg tggcagtttc gctgtttgga cgcaggtgtt gccggatccc       300
     aactgcacga gtcgactttt tcaagacgtc gagtgcagat ttctaccgtt ggtagataaa       360
     aagtcaacct attttggccc cctcagggta gaaaaccata ttgtttggtc cccggcggaa       420
     acctcacggt gtcaacgaag ccgggtgagg caaggccccg atttgcctgc cgagcccctc       480
     cagggcagag ctaacaatcg gaaggggtta gagcatccgg ccttggggga tctcctagtc       540
     ggacctaatc tacggctttt caacattttt ctgcgaaggc ctaacggccc gagcagctag       600
     gaacctatcg cacattaaga ttggcgaagg attacaagct tagggcacac taattaagta       660
     ctcatcctcc cgacctgcac ccggttggga gggacacgca ccacacacaa cccagggtat       720
     cccacccagg gcgctaggtt ttttacatcc ctcttagcta tcgttttttt ccgttagccc       780
     acgatggcgg aaaaaaccat cactatagac gcccttctgg caattccaga aatcaaagct       840
     tatatcgctc aacatttcgg agcgataacg atccttcctc cgcaacccaa acccgctcga       900
     tccaccgccc agccgctcga accggaacta ccggccgtcg gtacggcgat ggaaacggag       960
     ccggtcttgt cctcctcaaa ctcgtcttcc tcctcctcct ccgagtcgga agattcgtcc      1020
     aatgagggct cattcattga ggtccgctct cgcaaacgga gcaaaaggac caaaaacacc      1080
     aaagaggccc cctctaagac cccaaaaatc aagcagactg actcggcaac aacatctgcc      1140
     gcagccccgc ttgcaacgac cgccacggcc gctccggccc ccccagtcgt ctcacaggca      1200
     gccctaaccg ctgccccacc acctacggac agcaataccg tcgccccacc gacggtcaaa      1260
     aaatcactcg ctccgccgcc cctatatatt agggacaagg acaagtggct agccatctcc      1320
     gcatggctaa acactaacag gatttcgtat aaatctgcga aatccacccc ccaaggtata      1380
     cgagtggacc ttcactcgtc agccgaccac cgatctgtat caaaaatgct agggaatcaa      1440
     cagattccct accatacgta caccctccct gaagccaaac ttctgcgtgc tgtaatacgc      1500
     aacgtaccga gggaaataga gaccaaagag attctagaat ctcttaaaac ccaggatcta      1560
     ccggttgtag aagtacaccg gatgatccgg ggtaggggtc gttatcccct caacatgata      1620
     ctcgtctgcc ttacaaataa cgcagagggt aaaggcattt ttaaaattaa gaccatctgc      1680
     ggtctatctg gggtctcggt tgagccccca cacaaaaatg gcaacctggc acaatgccac      1740
     aagtgccaac tgtatggaca atcgtccaaa aactgctttg cccgtcctag gtgcgttaag      1800
     tgcctaggtg accatcacac ctctcagtgt gaacggccaa aggacatctc actctgcaaa      1860
     gagccaccag cgtgtgttct ctgtggagaa tacggacacc cggctaacta ccgcggctgc      1920
     ccaagagcgc cgaggaggtt agtccgccag cccaacacaa acggcaaggc cttgtactat      1980
     aacaagacct tcgtcccagc ccccttacca acccacaatg cgtgggctcg ccccctgcta      2040
     aacagcaagg aggctttccc aaccctgccc aacaggcagc ccgctgcccc acccgcaaca      2100
     tctcaactca aaccaccaac aaccgggcca aaccagccca ctggtggtaa tcccaagccc      2160
     cctcagggcg cccctattcc tatcgtcgtc gctaaaagcg cgcccccaaa agccccccaa      2220
     ggactagatc cagatctagc cctggtggcc aacttcgcag ctcaaatcaa tttcacggaa      2280
     atccgcgaaa ttgcagccga attaagaagg aacgagggaa acaacctcgc cctccttaat      2340
     accgcaatta aattttcccc cacgttagag cgtctaggct cgcttaaatt caaataaaat      2400
     ggataggtac actccaggca gagttaaacc cagacacctc aaaataggga cattcaatgc      2460
     caatagccta acccaacaga aggatgaagt aggcacattc cttcgggaac accagctcga      2520
     catcttgcta gtacaagaga cgttccttaa accatttaac aaggacccta gagtcgccaa      2580
     ctataatata gttcgcaacg ataggacaac ctcaccaatg ggcggaacgc ttatctacta      2640
     caaaaggtcg ctgcattgca cacctgtgga tccgccccct ctgatgtaca ttgaagcttc      2700
     aatttgcagg ctagccctct caggccatca gcctatcacc cttgtatccg catatctctc      2760
     tcccaataga gaacattcga aacagttggt tgaaaaagat ctaaaagcct tgctagaatt      2820
     gggaggcgcc gtcatcattg gcggtgacct taacgccaag aacacctctt ggagctgtca      2880
     aagttccaat aagaggggca agactttaga gctattcgct gacagactgg gatttgatgt      2940
     catagcgccc atagagccga cacacttccc ctttaacgtt tcgcacaggc cggacatact      3000
     cgatatcttt cttctcaaaa acataaacct tcgtttatgt tcaatagaag ttcaacacga      3060
     gttagactca gatcaccgcc cggtgactct ggaattagcc tcccgcaccc ccggcccctc      3120
     aggccacaat aacgaaagga ccaagatagc gactgactgg gcacggctag agaaaaatct      3180
     caagtcaacc tcgtcggtcc accttgatca aattcccaaa gacattacgt ctaaggaaga      3240
     gacctctcag gcgatcgact cgctcacaag tcacgtgcag tcgataatgg acgactgctc      3300
     gcggccggta ccagatacga gcgatcgtaa atggcgcctg ccagacgacg tccgtgactt      3360
     gttgagacgg aaaaacgccg cgacacgcgc ttatgaccgc taccctacgg aggacaaccg      3420
     tacccgccta cggtcactcc agagggaggt taaacaagca attaaaaaat tgagacagag      3480
     caaatgggac gccatgatcg aggagctaga accctctcac acagcctttt ggcagctttc      3540
     ccgctcactc aaaaaagaca tcgtgtccac tctccctcct ctcaccagac ccaaccagcc      3600
     tccggcattc atggacgatg aaaagtcaga atgcctggcc gactgcttag agcttcagtg      3660
     tacgccgagt acactacacc ccgacgccgc gaatcaccgc ttcatcgccg acgaagtgga      3720
     acgtcgtaac actctctcgc gctcgttagg aaacgacagc cccgatcagc caatcccagc      3780
     agtgaccacc gatgaggtcg aatcgttagt caggggtctc aaaaccagga aagccccagg      3840
     ttcggacgga atctcaaata aagtcattaa actattcccc gcccacttga taatcctgtt      3900
     gtgctgcatc ttcaatgcag cactaaataa taacatcttt cccgcgcaat ggaaagaggc      3960
     cgtggtaata ggaatccaca aacccggcaa gcgccgtacc gaacctagta gttaccgccc      4020
     gattagtcta ctaagaggtc taggtaagat ctacgaacga atagttctca gtagactacg      4080
     tacattcgcc gaggctaaca acctcgttcc cgacgcacag tttggcttcc gagctaaaca      4140
     cagctgcgta caacaagttc accgtttggt agaatacaca agtagtcagt tcatcatgaa      4200
     cagatatacg ggtgtattat tcctagacgt agcgaaagca ttcgacaagg tttggcatga      4260
     aggcctaatc tacaaactct atctcctcaa gatccctcac tacttaattc acattataca      4320
     tgactactta agtcatcgca gctttcgcta cagggtggaa gggacgttgt cgacctccca      4380
     ccctatcaag gccggcgtcc ctcaggggtc ggtcctctcc ccatttctct tcacgctata      4440
     cactagcgat atgcccaaat tcaaccgggt acataaagcg ctttacgctg atgacaccgc      4500
     actcttttgt gctggtagat ccccgacaac agtagccagg actctccaaa cagcggttac      4560
     cgccctagcc aattggttta ggaattggag attagaaatc aaccccgaga agagtcaggc      4620
     ggtcatgttc actagacgaa ctgcccgttc ctactctatc gatagcattc ccccccttaa      4680
     aattttcaac aagccggtca cttggaccag gcaggccaaa tacttgggtg tgacccttga      4740
     cgatcgactc agcttcgccc ctcacataaa gaaagtccgc gcacgggcag cctttgtgat      4800
     gggccgtctc cactgtctac tcaactctag gtcgcgtatg cccctgagta gcaaagtccg      4860
     actttacacc acctgcatac ggcctatcat gacctatgcc agcgtggtgt tcgcgcatgt      4920
     taagccacac aggatccaca ggctacagac actacaaaat cgtttcatgc gccgagctac      4980
     gggagcaccg tggttcatac gaaacgtcga tctccacatc gacctcgaac tgccgaccat      5040
     caagcagttt atgaaacggt gctctcagag ctactttgac tctgccatga cacaccccaa      5100
     ccaactagtg gttggggcgg cttcctatag accctccaaa atctcctcca tccgacgtcc      5160
     tcgtcacgtc ctcgacgaag aggacgacat tatcacactc gctcaacaaa gagcctacac      5220
     ggcccgcgag gccttaacaa ataaatatcc gcggttccgc cctcgccgtc gaggtgcgaa      5280
     accgcgccgc gcaaaagtca ctaccaaaaa cgtgggcacg tccactttgc ctccagcgac      5340
     gccccaagcc gaggtccgtt ccccacaggg ggagcccttg ggcgatgtcg cttagcatac      5400
     ttttctccgg gttgagagcc ctcagcgctc acccatagtc cgcgtcaagc tgtcaaggcc      5460
     atctgcggcc agcagctgta cacacaaaaa aaaaaaaaaa aaagtctatt cattcagtcg      5520
     acatacgata tcagctcgca cactcgtacg gtcgtcacta gttctattat caatttattg      5580
     tacataattt atgaaatgta aataaatcgt cagtcttaga aataactctc tacgttcttc      5640
     ttcgccttct tctcacatct tcattcgcca accacaa                               5677
//
ID   Lian-Aa1    repbase;    DNA;    INV; 4476 BP.
XX
AC   .
XX
DT   24-SEP-2010 (Rel. 15.10, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family Lian-Aa1 from Aedes
DE   aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian-Aa1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Tu Z. and Guzova J.A.;
RT   "Structural, genomic, and phylogenetic analysis of Lian, a novel
RT   family of non-LTR retrotransposons in the yellow fever mosquito,
RT   Aedes aegypti.";
RL   Mol. Biol. Evol 15(7), 837-853 (1998).
XX
RN   [2]
RP   1-4476
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (24-SEP-2010).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           641..4210
FT                 /product="Lian-Aa1_1p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MQNGAAQVALVQEPYFRRGNFYLGNLVDPVFATFSKL
FT                 EMANSRSMPRACVLVNKAIVATLISELTTRDVCAVTIDVSVGDLNRKYVYC
FT                 SVYLPHDEPSPTDDFKRVVVHCVTKGLPLIVGSDANAHHIIWGSSDINLRG
FT                 SSLMEYLSSTDLGLLNIGNRPTFMVSNREEVLDITLCSNRISHELTNWHVS
FT                 DEESLSDHRYIFFEHSNVTAQTLRFRNPRSTNWELYIELVATKFHGYSPSI
FT                 ENPSDLDDAVDTTTSYIMEAFEEACPLRSVKTTRGTPWWNSDLTRLRKQCR
FT                 RSWNRRRSAGSESFKSARKAYKKALRSAERSGWKNLCTNVSSLSEVSRLNK
FT                 ILAKSKDFQVNEIRLPNGDFTSSDEEVLECLFNTHFPGCVDIASTDEPNVF
FT                 SCSYESLASARSIVTTESIQWALNSFAPFKSPGADGIYPVLLQKGFEFIKH
FT                 VLKKLLVSSFATGYIPKSWRDITVKFIPKGGRASYEEAKSFRPISLTSFLL
FT                 KCLERIIDHHIRDVYLANMPLHVNQHAYQSGKSTVTLLHKVVYDIEKAFAQ
FT                 KQSCLGVFLDIEGAFDNVSFDAILEAARNHGLPTMITNWIHQMLKNRHLFS
FT                 TLRQAAIRKLSVCGCPQGGVLSPLLWNLVADTLLRQLNNCGFPTYGFADDY
FT                 LALIVGMCISTLFDLMQSALQVVESWCRQYGLSVNPNKTSIVLFTERRNRD
FT                 GIRPLRLFGTEINVTDQVKYVGVILDSKLSWTPHIDFRVKKACMAFGQCRR
FT                 TFGKTWGLKPKYIKWIYTTVVRPILAYGCLVWWQKGEVRTIQSKLGHLQRM
FT                 CLMAMSGAFSTTPTAALEALFDVAPLHIYLKQEALSCSYRLWVLDLLEKNP
FT                 VNRRSTHTSLFPLLVNWDKIVLAPSDLTIACNFPYRTFTTQFPSREEWTSG
FT                 YLERSISNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAEI
FT                 FALMCGVQSALQQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRTQIE
FT                 ELNSVNSVNLVWVPGHSSIAGNELADELARDGASHDFIGPEPAIPISKCWV
FT                 KLQINSWAATQHKQYWNSLESCRQTKLYITEPSPKVAKYLTNLSKQNCSLL
FT                 VRALTGHCRLNYHMANIQRADSFVCDSCDSDYGTSYHLICNCPVFAQMRFQ
FT                 LLGKHLLSETEYRSLNLQDILLFLTRCGNEL"
XX
SQ   Sequence 4476 BP; 1180 A; 987 C; 994 G; 1315 T; 0 other;
     ttagtggctg cttgggcacg tcaggagtta atcatcaata ttaacctcct tttcccgagc        60
     agcctagata gccgcgtagt gtcggtagcg gttgtttcaa ctggctaaga attaacacta       120
     cggactgcct gttccggtgg taaaagtcca cctcacaggt gacccctaat ttatggtgtg       180
     atgcgtaccg tgcctaagaa tgaatggtta ggggggtcta aataaaacct aaccgcaaac       240
     ggagcctgtg gggtaccagg gcgccctcca cagtattgag tccttcctgt gctacccgga       300
     gcaatggtgc aggtgacctt gtgtttctcc gagataatcg gctgcccttc ttcagtctct       360
     atcttgaggc ttaataaggg tgggattatg aatatgttga catttaattt aaattatcac       420
     ctatatggat tcgcattatg cgttttacac agtgtattct gtgctctttc gcctttggcg       480
     actttaaata gataccgatc tggttttttc gttgctggtc tttttcgtgc tgagattgca       540
     aaaagcttaa tcctgcctag tttgggtagt ggctacggtt aggttagctc agatcaatct       600
     tcagcataaa agaacagcaa cgatcaatct ttgcagactc atgcaaaatg gtgcagccca       660
     agtggcgcta gttcaagaac cctactttcg tagagggaac ttctatctag gtaaccttgt       720
     ggacccagtt tttgctactt ttagcaagct tgaaatggca aactcgcgct ccatgccccg       780
     cgcatgcgtg ctcgttaata aagcaatcgt tgctacactc atttctgagt taactaccag       840
     agatgtatgt gctgtcacaa tcgatgtttc tgttggtgac ctcaacagga aatacgtcta       900
     ttgttcggta tatttaccac atgatgaacc atccccaacg gatgacttca aacgagttgt       960
     cgtacactgc gtaacaaaag gccttccgct gattgtgggc agtgatgcca atgctcatca      1020
     catcatctgg ggcagctcgg atatcaattt gagaggctcc agtctgatgg aatacttaag      1080
     tagtacagac cttggattac ttaacatagg caatcgccca accttcatgg tttctaatag      1140
     agaagaagtg ttagacataa cgctctgctc gaatagaatc agtcacgagt tgacgaattg      1200
     gcatgtatca gatgaggaat cattatctga tcatcgctac atcttctttg aacattcaaa      1260
     tgtaactgcg cagactttgc gttttaggaa tccccggtca acaaactggg aactctacat      1320
     tgaattggtt gcgaccaaat ttcatggata ttctccgtcc attgaaaatc caagtgatct      1380
     ggatgatgcc gttgatacta caacatccta cattatggaa gcttttgaag aagcatgtcc      1440
     tctgcggtct gtaaagacta caagagggac cccatggtgg aattccgatc tgactagact      1500
     caggaaacaa tgtagaagga gttggaacag acgccgttca gctggatcag agtcgttcaa      1560
     gtcagctcgc aaggcttaca agaaggctct tcgttctgct gaacgatccg gctggaaaaa      1620
     cctttgtaca aatgtttcca gtttgagtga agtcagtcgg ttgaacaaaa ttcttgcaaa      1680
     atctaaggat ttccaagtga acgaaattcg cttacctaat ggtgacttta cttcttccga      1740
     tgaagaagtt ttagaatgtt tattcaatac acacttcccc ggatgtgtgg acatagcatc      1800
     tacggatgaa ccaaatgtct tttcatgtag ttacgagtct ctggcctcgg ctcgcagtat      1860
     cgtaactact gaatcgattc aatgggcact taatagtttt gctcctttca aatctccagg      1920
     agcggatggg atttatcctg ttctgctcca aaagggattt gagtttatca aacatgtttt      1980
     gaaaaagcta cttgtaagca gttttgctac cgggtacatt cccaaatcct ggcgtgatat      2040
     tactgtaaag tttatcccaa aaggaggacg tgcgtcgtat gaggaagcga agagttttag      2100
     accaatcagt ctgacctctt ttcttctgaa atgtctggaa cggattatcg atcatcacat      2160
     ccgtgatgtt tatttggcaa acatgcctct tcatgtgaat caacatgctt accaatctgg      2220
     aaagtccact gtgactcttt tacacaaagt tgtatacgat atcgagaaag cattcgctca      2280
     gaagcaatcg tgcttgggtg ttttcttgga tattgagggt gcctttgata acgtgtcttt      2340
     cgatgccata ttggaagccg cacgaaacca tgggctacct acaatgatta ccaattggat      2400
     tcatcaaatg ctcaaaaacc gacatctctt ctcgacattg cgtcaagcag cgattcgaaa      2460
     attgagtgtt tgcggatgcc cccaaggggg agtcttgtca ccacttttgt ggaatctcgt      2520
     agcagatacg ctattgaggc aactcaataa ttgcggtttt ccaacttatg gatttgccga      2580
     cgactatcta gctctgatag ttggtatgtg cataagcacc ctattcgacc tgatgcaaag      2640
     tgctcttcag gtagtcgaga gttggtgtcg ccaatatggc ctttcggtta acccgaataa      2700
     aacatctatt gttcttttta cggaaagacg aaaccgcgat ggaattcgac ctttacgtct      2760
     ttttggcact gagattaatg tgactgatca agtaaagtat gtcggagtca ttctagattc      2820
     caaactttca tggacacctc acattgattt cagagtcaaa aaagcttgca tggccttcgg      2880
     tcaatgccgg cgaacctttg gtaaaacttg gggcctcaaa cccaaatata tcaaatggat      2940
     ttacacaaca gttgttcgac caatattggc atatggatgt cttgtgtggt ggcaaaaggg      3000
     cgaagtgaga acaatccaat caaaattggg ccatctccaa aggatgtgct tgatggcgat      3060
     gtctggtgcg ttctctacaa ctcccacagc agcgctcgag gcccttttcg acgttgcgcc      3120
     actacacata tatcttaaac aagaagcact ttcttgctct taccgtttat gggtactgga      3180
     tctactggag aaaaatccag tgaatcgtag atctacacac acttcgttgt ttccactttt      3240
     ggtgaattgg gacaaaattg tccttgctcc aagtgatctc acaattgctt gtaactttcc      3300
     ttacaggaca tttaccacac aattcccttc acgggaagag tggacgtctg gctatttgga      3360
     aagaagtata tcaaacaata tagtatgtta cactgatggc tcccttcttg aaggtagagc      3420
     tggtgcagga gtatattctc gtgagctaag gctgaatcag ttttactcac ttggtagaaa      3480
     ctgcaccgtt tttcaggcgg aaatatttgc tcttatgtgt ggagtgcaat cagcacttca      3540
     acagcgcgta atgggtaaag tcatatactt ctgttcagat agtcaggctg ctataaaagc      3600
     tctcgcttcg gccaactcaa ggtcgaagct tgttatcgca tgtcgaactc aaattgagga      3660
     actgaattca gtcaactctg taaaccttgt atgggtacct ggccattctt ccatcgctgg      3720
     aaatgaattg gctgatgagc tagctcgcga tggagcatcg catgacttca ttggccctga      3780
     gccggctatt ccaatttcga agtgctgggt gaagcttcag ataaactctt gggcggcaac      3840
     tcagcacaag caatattgga atagtttgga gtcgtgtcgt caaacaaaat tgtatattac      3900
     tgagccatct ccaaaggtgg cgaagtattt aacaaatctg tcaaagcaga attgcagtct      3960
     cttggtcaga gcgttgacag gccactgccg actcaactat cacatggcaa atattcagcg      4020
     tgctgactca tttgtgtgtg atagttgtga ctccgattat ggaacttcgt atcacctgat      4080
     atgtaactgt ccagtttttg cgcaaatgcg attccaatta cttggtaaac acttattaag      4140
     tgaaactgaa tacagaagcc tgaatcttca ggacatcctg ttattcttaa cccgctgtgg      4200
     taatgagcta taggctctct ttacgctcac gcgttttgca gtgccctttt tagggcgctg      4260
     ttcgaaccca ttgtggtatg gagctacatg ctctcatttc gcttatgcga tcttccctct      4320
     tcaagggacc ccactcctat ttcctcccat ctttcccttc cctttcctct cccatcgggt      4380
     agatgatgaa ataggctcaa atatggcgat ggcacaaatc tcccaactgg tggggaacgt      4440
     gcctttggag ccggccttct gatacctgat acctga                                4476
//
ID   LINE-1_AA   repbase;    DNA;    INV; 4709 BP.
XX
AC   M95171;
XX
DT   26-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   A. aegypti LINE-like retrotransposon, partial sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; Juan-A;
KW   LINE-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4709
RA   Mouches C., Bensaadi N. and Salvado J.C.;
RT   "Characterization of a LINE retroposon dispersed in the genome of
RT   three non-sibling Aedes mosquito species.";
RL   Gene 120(2), 183-190 (1992).
XX
DR   Genbank; M95171; Positions       1    4709.
XX
SQ   Sequence 4709 BP; 1544 A; 884 C; 823 G; 1458 T; 0 other;
     ccagtgcgca tcgtaccttc gtgctgtgcg tacacgaatt ctctctgctc ttggaagttt        60
     tcttaaaaac tacctaaagc aataaaacag tacttttcag tgctacaaaa acagtacttt       120
     tcagtgctaa aattaaaaac ggtacttttc agtgctacta aaacagtact tttcagtact       180
     attttttcta ctattgatcc ctttacgatc cttgtttgga cccgtgcctt cgatttttcg       240
     ttggacccgt tggcgaaagc tagcggtggt aatccttctt ggacaccgtc ttgggaaaaa       300
     acctttcgaa ggtcacgtct tctttcgttt attaattaaa catggtatca acaactaaca       360
     aaaggaaggg tgaatctctg aattcactac ttccttccaa aaaagtgggt tttaaaactg       420
     tcactacacg tggcaagaat ggaagaaagg acgtttctcc ggaatgcgaa ctttcttcca       480
     agggtgaaat gaataattgt atcgaaatga gcaatcagtt cgatgctcta gacaaatttt       540
     ccgaacacca aatcgaagca gcctctagct caggctcttt gattcaagtg aggaagcaaa       600
     gagtgccgcc tatcgtggtc agttgttccg aatttggggg atttaggcag gagatcttaa       660
     actccattag gggaatcaag gtttccttcc aaatcgcaaa gaaaggagac tgtcgcgttt       720
     tgccggaaac tcttaaagat cgtgagcttc ttctcaaaca tcttgaagag aagaagcaca       780
     atttttttac ttatgacgac aaaactgaac gtttgttcaa agttgtcttg aaaggtctct       840
     caagtgacta taaatcacct gaagagatca aaaatggaat aattgattta cttggatttt       900
     ccccagtcca agtaatcatt atgaaaaaga gaacccaatc tggcattgtt cggaaagggc       960
     tttctcaaga attttattta gttcacttta acaaaaaaga actaaataat attaaagctt      1020
     tagaaaaagc aaaacttttg tttgatgtcc gtgtgacatg ggaacatttc cagaaacctg      1080
     gaggaaatta ccagaacccc actcagtgcc gtcggtgcca aaagtggggt catggtacaa      1140
     aaaattgtcg catggatgct aaatgcatga tttgcggagg ttcttctcac accaaagacg      1200
     tctgtccagt gaaggaagat accaccaaat tcatatgttg taattgcggg gctaaccata      1260
     agtccaattt ttggaattgt ccttcacgca aaaaagtcat tgaggctcgt gccaggcaga      1320
     tgaaagataa tatccgttac gataacggtc gtttccggaa tttgcctggt agagtatcga      1380
     acaatgctca tttttcagtt aacgatcgct tgatcatgaa tcatacccat caggaagatc      1440
     ataatcatgc tcattcacaa actaatttta ttccgtcggg tagccgttcg aatctttcta      1500
     cttcgaatgt atctacccac ggtaaatcct ttgccgatat cgtagcagga aattcgaact      1560
     cctcccctgt tcgatccatg ggtacccatt ctacttgttt caaatcaaat ggaaaaaacc      1620
     ctaccgccac aggtaactcc gcttcttcgt ctgccgaaaa ttccaatggg aaatcacatg      1680
     acatgtctgc ctctgatttt aattttctaa ctgaacaatt gaatctaatg attgatgcaa      1740
     tgttcaaagc caccactatg actgaagcag tccaagtagg tgtaaaattt acaaatcaaa      1800
     ttgttattgg attacgtttt tctaatggat ccaaataata atttaaatat tttaaattga      1860
     atgctcgttc tctgaatggt aaagaggacg agctgtttaa ttttcttacg gttaataacg      1920
     tgcatatagc agttattacc gaaacgtatt taaaacctgg atctaaactc aaaagagatc      1980
     ctaacttttt tgtttatcgt aatgatcgac ttgatggggc atgtggggga gttgcaatca      2040
     tcattcatag gcgtataaaa catcaactgt tttcatcatt tgaaactaaa gtttttgaaa      2100
     ctttaggtgt ttctgttgaa acacagtttg gtaaatatac tttcatagct gcctatttgc      2160
     cttttcaatg ctctgggcag caagttaatt tgctccaaac tgacttgcgt aaattgactc      2220
     gcaataagtc aaaatttttt gtcattggtg actttaatgc caaacatcgg tcatggaata      2280
     attctcaaag taattccaac ggcagaattt tatttgatga gtgctcttca ggatatttct      2340
     caattcaata ccctgatagc cccacatgtt tttcctcttc tagaaatcca tctacgattg      2400
     atttggtctt aaccgactct agtcatcttt gtagccaact gattactcat gctgattttg      2460
     attctgatca tgtccctgtt acatttcaaa tatcccaaga agcgattctc aatcctatca      2520
     gctccacttt caattattta cgagccgact ggaatatata taaaacgtat gttgactcca      2580
     atcttgatgt taacatttct ttagaaacta aacttgatat tgacaatgct cttgaaactt      2640
     taacaaattc cattgttgaa gcccggagca ttgcaattcc aaaatgtgaa gtaaaatttg      2700
     aatccgtgat tatagacgat gatcttaaac tcttgatccg tcttaaaaac gtgaggagaa      2760
     ggcaatttca agccactcgc gatcctgcta tgaaaattat atggcaggat ttgcagaaag      2820
     aaatcaagaa acgttttgct caattaagaa acaaaaattt tgaaaataaa atttctcaat      2880
     tggaccctgg ctctaagccc ttttggaaat tatcgaaaat cttgaaaaaa cctcagaagc      2940
     caataccggc attgaaagag gaaaacaaat tattactaac taattgcgaa aaagctcaaa      3000
     aacttgctat gcagtttgaa agtgcgcaca attttaattt aggacttact agtccaattg      3060
     aaaatcaagt tactcaggag ttcgaaaata ttctaaatca agagaacgtt ttcgaaaatg      3120
     cctgggagac ctatttggaa gaagtgagaa ctattattaa aaaattcaaa aacatgaaag      3180
     ctcctggcga tgatggaatt ttctacatcc tcatcaagaa acttccagaa agtagcttat      3240
     catttttagt tgatatattt aacaaatgtt ttcaattagc atattttcct gacaaatgga      3300
     aaaatgctaa ggttgttcca attttaaaac cagacaaaaa tcctgcagaa gcttctagct      3360
     atcgtccaat cagtttgctt tcctccatca gtaaactttt tgaaaaggtt attttgaaca      3420
     gaatgatggc ccacatcaac gaaaattcaa tttttgccaa tgaacagttc ggattccgcc      3480
     atggacattc gaccactcat caacttttac gtgtaacaaa tttgacccgt gccaacaaat      3540
     ctgaaggcta ttctactggt cttgctcttc tagacataga aaaagcattc gacagtgttt      3600
     ggcatgaagg tttgattgta aaattaaaaa acttcaattt tccaacatac attgttagaa      3660
     taattcaaag ttatctgtca aatcgtacac ttcaggttaa ttatcagaac tccagatctg      3720
     aaagacttcc tgtaagagct ggtgttcctc aaggcagcat tttgggacca atattataca      3780
     atattttcac atctgactta cctgagttac ctcagggatg tcaaaaatct ttgtttgcgg      3840
     atgacacagg cctctccgcc aaaggacgaa gcctgcgtgt catctgtagt cgattgcaaa      3900
     aaagtttgga tattttttct tcatacttgc aaaaatggga gatttctcct aatgcttcca      3960
     aaactcaact aataatattc ccacataaac caaaagctct ttatttgaaa ccttcaagta      4020
     gacatgttgt cacgatgaga ggggttccaa taaattggtc agatgaagtt aagtatctag      4080
     ggctcatgct agataagaat ttaactttca aaaatcacat tgagggcatt caagccaaat      4140
     gtaataaata tataaaatgt ctttatcccc ttattaatag aaaatcaaaa ctttgtctta      4200
     agaacaagct gttgatattc aaacaaattt tcaggccagc catgttgtat gctgtaccaa      4260
     tatggactag ctgttgtaat accaggaaga aagctctgca gagaattcaa aataaaattt      4320
     tgaaaatgat tctgaggctt cctccctggt atagtaccaa tgagttacat agaatatcaa      4380
     tgttgaaaca ttggaacaaa tgtcaaatac aatcattaat aatttcaggc aaaaatcgtt      4440
     acaatcttct attgccacga ttaatgcgtt atatgtttag gttaagttag gttaagtata      4500
     ttaaaaacgt tttttttctc ttataagcag gtgaaatcaa ctcacctgta aaaaaactga      4560
     actgctacgg caaatgaaat gtaatatgtt gttaacaaaa tgttaattta atcttaaatt      4620
     tgttttacca aattaggatg atagtgttgt caaataacac agaacaccta gatataagaa      4680
     atgaatgtaa tgttttttaa agaaataaa                                        4709
//
ID   LINE1_BM    repbase;    DNA;    INV; 5158 BP.
XX
AC   D26009;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   14-FEB-2012 (Rel. 17.02, Last updated, Version 3)
XX
DE   LINE1 repeat family; retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   LINE 1 repetitive sequence; BMLINE1; LINE1_BM.
XX
NM   LINE1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5158
RA   Ogura T., Okano K., Tsuchida K., Miyajima N., Tanaka H.,
RA   Takada N., Izumi S. and Maekawa H.;
RT   "A defective type of non-LTR retroposon is dispersed throughout
RT   the genome of the silkworm, Bombyx mori.";
RL   Unpublished (1993).
XX
DR   GenBank; D26009; Positions     121    5278.
XX
SQ   Sequence 5158 BP; 1181 A; 1584 C; 1189 G; 1204 T; 0 other;
     attaggagga ggaatctcac acccccgatt actctcttta gacaaaccat accctgggcc        60
     ccattccgat agaggcaccc gtcacgcgcg gacgtgctca tcgaccactc gatcgcccgg       120
     cctttgttcg cccggctttt gttagcccgg ccattgttcg cgcggcctgt gttcgtggta       180
     caccgccgac caagtgtttt cttggagttt tattgtttgg tttcctttgt tattctgtgt       240
     cgtggtacat ctgccgacaa actgtcttcc tggaagtgtt taattgtttt gtttcttttt       300
     gttatttctg ttttgttgtg atttttcttt gtcctgcaga atctgtgcca tcgcacctgt       360
     gtcatagacg ctcaggtcga gaagttggcc tcgccgcaag gcagagtgtt ttctatgacc       420
     ccagggtagc cccacctggc acgatagaca tcatggacgc tgtatttgcg gaatttctcc       480
     gcttcgctac ccaaagctca cttccgaagt ttcaggccct tcaaggccga tcacactgcg       540
     agccctctct cgtggactcc accgagctcg cttgctcctg cgtcgcctgt acctgcgtgc       600
     aaagcttctg catcgagcac cgagctcggc gggctgcgtc cgcgtcgcta tactggcgag       660
     taaaactgct gcgtcgtcgc gtggtcaccg ttccagcagc gcgatcatcc gcggcctccg       720
     tcgcgccgtc caaaacacct actcgtaggt cacctgcgcc cgctcctcgt cctccgactc       780
     tgactcggag atggaggtcg acctcgctcc cgcctcatcg acggatggat tcaccctagt       840
     gcaaaagggt aagaagcgtg cgcggagtct cgagctcccg cggccgctaa aattagcaaa       900
     gccgcgaacg cgtcgcgccc ccgccctcag actcccgttg cgcctccagc ccgtggccac       960
     tccgtcgccg cgtccggtgg cacaaaataa agcccagacc cctcccccgg taatccttca      1020
     agagaaggca gcttgggaac gagtttccct ggccttaagg ccaaaaatat caattttacg      1080
     aatgcccgta acctcgcgaa cggcattcaa attaaggttc gaacagacgt acgtatccat      1140
     agggcctctc ttcttacctc cgtaaggagc gtataagttt ccacacatat acgctccagg      1200
     aggagcgcga acttcgtgcc gttatacgtg gcatccctaa agagttggat agacgagctt      1260
     cggtcaaggc gaccttctcg aacaaggcta ccggttaact ccgtacaccg catgcacaca      1320
     ggccgcggaa gggagccata taatatggtt ctcgtcgcct ccagcctacc cccgagggta      1380
     agcaaatatt caacatccga acggtctgta gcctttccgg aatcgcagtc gaaaccccac      1440
     acaagaaagg cacacctagc agtgccataa ctgcaattat acgggcattc ttcccgtaac      1500
     tgtcacgcgc gctcccgatg cgctcaagtg cttaggcgat cacgcacggc cctatgcact      1560
     cgcgatcaaa aaaccgcgac aagaaccgcc tagctgcgtc ctgtgtcgaa cacagggtca      1620
     cccgcaaatt accgggatgc cccgagcccc gaaaataaat cgccgcgtcg ccgcaaaacc      1680
     gccgtccgag cttccgcgcc cagacatcaa agcctcggca ccctctgtgt cgcaggctaa      1740
     gccagcgttc gttccggcac cggtgcccag tgtctcggcc tgggcgaaac cgctgccgta      1800
     catgaacacg gctacaactc cctcctccgc gattcgtccc gcccccgcga ctcgtccctc      1860
     tcccgcgatt gcctccgaac cgtgtccgat caatctcgct ttagtgatcg acttctttca      1920
     gtcgatcaac tttgagcgcg ttaacgcttt ggcgacgcca ttcgcactgc caccacatca      1980
     caacacttta tcgccgttgt gcaagaatac gccgacgtat acgcgtcatt aaatacgtac      2040
     gtcctcccct cactccgccg gtaatcaatg gcgtatataa gtagaataaa gccctatccg      2100
     taacgatagg attttttaac gttacggtct cgcaaatcag cgtgatcagg tttctgactt      2160
     tttgcgtgac catcaaattg atatcttttt agtgcaggag accctactta agcccgcgcg      2220
     ccgtgaccct aaaatcgcca actataacat ggtcaggaac gacaggctct ctgctcgtgg      2280
     tggtggtacc gtcatttact atagaagagc cctgcattgc gtcccactcg atcctcccgc      2340
     gctcgctaat atcgaagcat cagtgtgccg aatctcactg acggacacgc gccgatcgta      2400
     tcgcgtccgt ttatcttcca ccggataaga tcgtctaagc agtgatatcg aggcgctgct      2460
     cggcataggg agctctgtca ttctggcggc gacctaatgt aacacatagt gaactcacac      2520
     acacaacccg atgcagcgct gacgcgttag tcgataatct cgccttcgat atcatcgctc      2580
     cgctaatccc gactcactac ccgctaaata tcgcgcatcg ccggatatac tcgacatagc      2640
     gttattaaaa aacgtaactc tgcgcttaca ctcgatcgaa gtagtttcag agttagattc      2700
     agaccaccgt cccgtcgtta tgaagctcgg tcgcgctccc gattccgttc ccgtcacgag      2760
     gactgtggtg gattggcaac acgtgggcat cagcctggct gaatctgatc caccatcgta      2820
     ccgtttagcc ggactctacc cgtctcctca ggataccgtg aagccataga catcttaacg      2880
     tcacacatca cctcgacatt agataggtca tcgaaacaag ttgtagcgga ggacttcctt      2940
     caccgcttca aattgtccga cgatattagg gaactcctta gagctaagaa cgctcgatac      3000
     gcgcctacga caggtatcct accgcggaaa atcgtattcg aatgcgtgcc ctacaacgcg      3060
     acgtaaagtc tcgcatcgcc gaagtccgag atgccagatg gtctgatttt cttagaagga      3120
     ctcgcgccct cccaaaggtc ttactaccgc ttagctcgta ctcttcaaat cggatacggt      3180
     agtaactatg cccccctcgt aggcccctca ggccgactca cggcgttcga tgatgacgaa      3240
     aaagcagagc tgctagccga tacattgcaa acccagtgca cgcccagcac tcaatccgtg      3300
     gaccctgtgc atgtagaatt agtagacagt gaggtagaac gagagcctcc ttgcaccctc      3360
     tgatgtgtta ccacccgtca ccccgatgga agttaaagac ttgatcaaag acctacgtcc      3420
     tcgcaaggct cccggttccg acggtatatc caaccgcgtt attaaacttc tacccgtccc      3480
     actcatcgtg atgttggcat ctattttcaa tgccgctatg gcaaactgta tctttcccgc      3540
     ggcgtggaaa gaagcggacg ttatcggcat acataaaccc ggtaaaccaa aaaatcatcc      3600
     gacgagctac cgccgattag cctcctcatg tctctaggca aactgtatga gcgtctgctc      3660
     tacaaacgct cagagacttc cgtctcatcc aagggcattc tcatcggtga acaattcggg      3720
     ttccgcacaa atcactcatg cgttcaacag gtgcaccgcc tcacggagca cattcttgta      3780
     gggcttaatc gaccaaaacc gttatacacg ggagctctct tcttcgacgt cgcgaaaagc      3840
     gttcgacaaa gtctggcaca acggtttgat tttcaaacta ttcaacatgg gtgtgccgga      3900
     tagtctcgtg ctcatcatac gggacttctt gtcgaaccgc tcttttcgat atcgagtcga      3960
     gggaacccgt tcctccccac gacctctcac agctggagtc ccgcaaggct ctgtcctctc      4020
     accctcctat ttagcttatt cgttaacgat attccccggt cgccgccgac ccatttagct      4080
     ttattcgccg acgacacgac tgtttactat tccagtagaa acaagtccct aatcgcgaag      4140
     aagcttcaga gcgcagccta gccctaggac agtggttccg aaaatggcgc atagacatca      4200
     acccagcgaa aagtactgcg gtgctctttc agaggggaag ctccacacgg atttcctccc      4260
     gtattaggag gaggaatctc acacccccga ttactctcgt tagtcaatcc ataccctggg      4320
     ccaggaaggt caagtacctg ggcgttaccc tggatgcatc gatgacattc cgcccgcata      4380
     taaaatcggt ccgtgaccgt gccgcgttta ttctcggtag actctacccc atgatttgta      4440
     agcggagtaa aatgtccttc ggaacaaggt aacactttac aaaacttgca taaggcccgt      4500
     catgacttac gcgagtgtgg tgtcgctcac gcggcccgca cgcacatgga cacccttcaa      4560
     tctctacaat cccgcttttg cgggttggcc gtcggagctc ccgtggttcg tgaggaacgt      4620
     tgacctacac gacgacctgg cctcgaatct atacagaaat acatgaagtc agcgtcggaa      4680
     cggtacttcg ataaggctat gcgtcatgat aatcgcctta tcgtagccgc cgctgactac      4740
     tccccgaatc ctgatcatgc aggagccagt caccgtcgac gccctagaca cgtccttacg      4800
     gatccatcag atccaataac cttcgcacta gacgccttcg ctctaggagc aggcttaggg      4860
     acctcggtaa ccgtactcgt cgaactcgac aaagagttcg ccgtgcaacc taacccatga      4920
     atcagctcgc tgagtttctc gccggatctt ctcagcgggt cgcgattccg atccggtact      4980
     agattcattc gcgaagcagc tgctcttgag ctgttaggtc tccttcggag gcgctcgggt      5040
     agctgttagc aaatcccacc cctcctggct gagcctttgc tcgcccacct gtcctggtga      5100
     aactggaaag gcctccgggc caccagtaat ccttcaatca taaaaaaaaa aaaaaaaa        5158
//
ID   LINER1      repbase;    DNA;    INV; 5163 BP.
XX
AC   .
XX
DT   06-NOV-2007 (Rel. 12.11, Created)
DT   15-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; LINER1.
XX
NM   LINER1.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5163
RA   Jurka J.;
RT   "Non-LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1175-1175 (2007).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           169..1593
FT                 /product="LINER1_1p"
FT                 /translation="MDSELITLLPQAGQATVPSPAVDSDRVKAPVVDAGPM
FT                 EFGGRGGQTHLEAAEVYHLTTAACRDAGDMEMEVDADRDKRAACITQRNAH
FT                 LDRLGSRIDELMDYVRDRHNVHKQIKDLARIIRASYKNLCMAEDNLQQCQR
FT                 PGTQGRETQTTPSLRSRKAGTTKKAPTTPQDRNGGNKEEDNQPKKAAWQEV
FT                 VTRKSKKKEKKASKEDKSVPGVTNQNRTSKDGPKRARPPRPDALIIKAAEG
FT                 KSYADILSKMKAAPSLNTLGNSVNKIRRTVAGDLLIELKRTKEVKTSDFQE
FT                 AVKAVLVEGATIKALQEEETIEVRDLDMLTSKEEVLEALQKEIGEENIIEV
FT                 STIRSLRKTYGDTQIAVIRVPAQIAAKITKLQKIRIGWVNCRIRVANRKNE
FT                 PLRCYKCLGFGHIGRKCTVTEDRSKLCFKCGKDGHKAKECKNQPNCVLCKG
FT                 GTGGKSDHAAGSYACPVYRAAVEATDRQRK"
FT   CDS           1593..3350
FT                 /product="LINER1_2p"
FT                 /translation="MKIVQLNINHCATAQDLLSQYVRETGIDIAIVCEQYR
FT                 DLDKPSWDMDSTGKAAIWACGDAAFQEKMTRRNEGFVRAKVAGVHIYSCYA
FT                 SPNTSIEQFRQLLDQIVQDAVGRKPVLIAGDFNAWAVEWGSQRTNERGRAL
FT                 LEAFALLDLVLVNQGCSYTFQRGDAGSIIDLTFVSSCLIGSVRSWMVSDHY
FT                 TNSDHQAIIIEIRISKQRSNGRATTKRVGWKTKDYDKETFLLALEEIQLSG
FT                 SANDKVEQVMGNITRACDATMPRRAPNNRRPPVYWWDKEIDAARKECHRTR
FT                 RREQRARKKYYKTGRGKEIVDALNKEMKDAKRILKKKIRENKRRCLKELQD
FT                 EVELDPWGRPYQVVMKKIKGGYIPPPKSPELLDRIVTTLFPLQLEVTAIPE
FT                 AEANDETIPTITTEELLAACKRIGNNKAPGLDGIPNIALKQAIQARPDVFV
FT                 DLYNSCLEEGTFPKNWKKQRLVLLPKGDKPPGEAASYRPLCMLDTPGKILE
FT                 RIIGVRMDQVIEKPGGLAEYQYGFRKKRSTLDAVSLVVDTARTAIEGKRWK
FT                 GGSKKYCAIITLDVKNAFNSASWGKIHEALRKKEVPAYI"
FT   CDS           3362..4612
FT                 /product="LINER1_3p"
FT                 /translation="MSDYLKDRTLLYDTESGTKTYQVTGGVPQGSVLGPLL
FT                 WNIMYDGVLRLELPEGATVVGFADDIAVVVVAKQKEEVTEIANEAVSIIHD
FT                 WLKQTGLELASHKTEAILISSRKKIETITLSVDGHEIDSQPTIKYLGITMD
FT                 ARLTFKQHLERVSNKAAKVGAALSRLMPNVGGPTQGRRLLLASVTTSIMLY
FT                 GAPIWADAMLVKSYARKLSTVYRRSALRVASAYRTVSEDAVCVISSMPPID
FT                 LLATERKNIYEEXRRVDNTQKEVWKSAKEQTLAEWQRRWDSSGKGRWTHRL
FT                 IPRIVGWTNRRHGEVNYYLTQFLSGHGCFRAYLHRFKIEDNPNCPVCLEAN
FT                 EDAEHVFCNCSRYEMEREELERYLQTRVTPESMMTAMLASKDGWCAVNNYV
FT                 RTIIKKVRNDEENRREGQGETAE"
XX
SQ   Sequence 5163 BP; 1690 A; 1100 C; 1398 G; 972 T; 3 other;
     gcgcggggat gccgataccc cgtatgtggc gcgtcccctg ggtggcggat aggggaatgc        60
     tcatcggcgc gtcgaggtct cctcaaccgg ccgaagggta gagcagaaat aaaatatgct       120
     ccgcggacca aacaggctag gggaagaaac cccgaagata aatcaaacat ggatagtgag       180
     ttaataacat tactacccca agcgggtcaa gccacagtgc ccagtcccgc cgtcgattcc       240
     gatcgggtga aagccccggt ggtcgacgct ggccccatgg agtttggggg gaggggsggg       300
     caaactcact tagaagccgc agaggtttat cacctgacca ctgctgcatg tagagacgca       360
     ggtgatatgg aaatggaggt tgatgcagac agggataaga gagctgcatg cataacgcaa       420
     aggaatgcgc acttggatcg ccttggcagc agaatcgatg aactgatgga ctatgtcagg       480
     gacaggcaca atgtgcacaa gcaaattaaa gatcttgccc gaatcataag agcaagctat       540
     aagaatctct gcatggcaga agataactta cagcaatgcc agcgcccggg aacacagggg       600
     agggaaaccc agacaacccc aagtcttaga tctcggaagg cgggtacaac aaagaaagcc       660
     ccaactactc cacaggatag aaatggagga aataaagaag aggataatca acctaaaaag       720
     gcagcgtggc aggaagtcgt cacaagaaag tcaaagaaaa aggagaaaaa ggcaagcaaa       780
     gaggataaaa gtgtccctgg cgttacaaac cagaatagga ccagcaagga tggaccgaag       840
     cgggcaagac ctcccagacc ggatgcttta atcatcaagg ctgcagaagg aaagagctat       900
     gcagacattt tgtcaaaaat gaaagcggct ccgtcactta acacactggg gaatagcgta       960
     aataaaatac gcagaacagt tgcaggagat cttctgatag agcttaaacg cacaaaagaa      1020
     gtcaaaacct cggacttcca agaagcagtt aaagcggtac tagtggaagg cgccacaata      1080
     aaagcactcc aggaagaaga aaccattgaa gtaagagatc tggacatgct tacctcaaaa      1140
     gaggaggtac tagaagcact acagaaggaa attggcgaag agaacatcat agaagtctct      1200
     acgataagat ctctgcgaaa gacgtatggt gacacgcaga ttgcagtgat acgggtacca      1260
     gctcagatag cggctaagat cactaagcta cagaagatca gaataggatg ggtcaactgt      1320
     aggatccggg tggctaaccg caaaaacgag ccgcttaggt gttataaatg tctaggtttt      1380
     ggccatatcg gtagaaagtg cacagtaact gaagacagaa gtaagctttg ctttaaatgt      1440
     ggaaaagatg ggcacaaagc aaaggagtgt aagaaccaac ccaactgtgt actctgcaaa      1500
     ggaggcacag gtgggaagag tgaccacgca gctggtagct atgcatgccc agtttaccga      1560
     gctgcagtag aagccactga cagacaaaga aaatgaaaat agtgcagttg aatataaatc      1620
     actgcgcgac tgcacaggac ctactgagcc agtatgtccg cgagacagga atcgacatag      1680
     ccatcgtctg tgaacaatac agagacctgg acaaaccatc gtgggatatg gacagtactg      1740
     gtaaagcggc gatatgggca tgcggagacg ccgctttcca ggaaaaaatg acaagacgta      1800
     atgaaggatt cgtacgcgct aaggtcgcag gcgtacacat ttacagctgc tatgcttcac      1860
     ccaacacgtc gatagaacaa ttcagacaac tgttggacca aatagtacag gatgctgtag      1920
     gaagaaaacc ggtactgata gcaggcgatt tcaacgcctg ggcagtagag tggggcagcc      1980
     aaaggacgaa cgaaagagga cgagcgctat tggaagcatt cgccctcctt gacttggtct      2040
     tagttaacca gggatgttct tacacatttc aaagaggaga cgcagggtcc atcatagatc      2100
     tcacgtttgt cagcagctgc ctgattggct cagttagatc gtggatggtg agcgatcatt      2160
     acacaaacag tgaccaccaa gcgataataa tagagataag aatatcaaaa cagagatcca      2220
     acgggagggc aacgacaaaa agagtcggtt ggaaaacgaa ggattatgat aaggagacat      2280
     tcctgctggc tctagaagaa atacagctgt ctggatctgc gaatgataag gtcgagcagg      2340
     taatgggaaa tattacccga gcctgcgacg caacgatgcc aaggagagct cccaacaata      2400
     gacgaccgcc agtatactgg tgggataaag aaattgacgc agcccgcaaa gagtgtcatc      2460
     gaaccagaag acgggaacag cgggctagga agaaatacta caagactggt cgtggtaaag      2520
     aaatagtaga cgccctaaat aaagaaatga aggatgctaa acggatactc aagaaaaaaa      2580
     tccgagaaaa taaacgacgg tgccttaaag agttacagga cgaggttgag ctggacccct      2640
     gggggcgacc gtaccaagta gtaatgaaga agataaaggg aggttatatc ccccctccta      2700
     aaagcccgga attgctggac cgtattgtga ccacactgtt tccccttcaa ctggaagtaa      2760
     cagctattcc tgaagcggag gcaaatgacg aaaccattcc aacaatcacc acagaggaat      2820
     tactggctgc atgcaaaaga attgggaaca acaaggctcc aggcctggat ggcataccca      2880
     atattgcatt gaaacaagct atacaggcac gccccgatgt ctttgtggac ttgtacaatt      2940
     catgtctcga agaagggacg tttcctaaga actggaagaa gcaacgcctg gtgctactac      3000
     caaaaggaga taagccacct ggagaagctg cctcatacag accactctgc atgctggaca      3060
     ccccgggcaa gattttagag cgcataatcg gcgttagaat ggaccaagtc attgaaaaac      3120
     caggcggact agcggaatat caatacggct tcaggaaaaa acgctccact cttgacgccg      3180
     taagcttagt agttgacacc gctagaactg caatagaagg aaaaagatgg aaaggaggat      3240
     ccaagaagta ctgtgctatt attacactgg atgttaaaaa tgcgtttaac tcagccagct      3300
     ggggcaagat acacgaggca ctacggaaaa aagaggtacc cgcatatata taagaaggat      3360
     tatgtctgac tacctgaaag acagaaccct tttgtatgac acagagagcg gcacgaaaac      3420
     ctatcaagta accggagggg tcccacaagg gtcagtgctt ggcccactat tgtggaacat      3480
     catgtacgat ggcgtactta ggctagagct acccgaaggt gcaacagttg tagggtttgc      3540
     agatgacatt gcagtagtgg tagtagcaaa gcaaaaggaa gaggtgacgg aaatcgctaa      3600
     cgaggcagta agtataatcc acgattggct aaagcagact ggacttgagc ttgctagcca      3660
     taaaacggag gctattctta tatccagtag aaagaaaata gagacaataa cgctgtcagt      3720
     ggacggacac gaaatagact ctcagccgac cattaagtac ctgggaatca ccatggacgc      3780
     cagactaacg tttaagcagc atcttgagag ggtgagcaat aaggcagcaa aagtcggtgc      3840
     tgcactatcg cgactaatgc caaatgtagg tgggccaacg cagggtcgaa ggttactcct      3900
     agccagtgta actacatcaa ttatgttata cggtgcccca atatgggcgg acgctatgtt      3960
     ggtgaartcc tatgcacgaa agctgtcaac agtttatagg agaagtgcat tgcgggtcgc      4020
     ttctgcctac cgaacagtat cagaagatgc agtgtgcgtt atttcaagta tgccgcctat      4080
     tgaccttcta gcaacagaac gaaagaatat atacgaagaa arccggcgtg ttgacaatac      4140
     tcaaaaggaa gtttggaaat ccgcaaagga acaaacccta gctgagtggc aaagacgatg      4200
     ggactccagt ggaaaggggc gatggacgca ccgcctcata ccacgtattg ttggctggac      4260
     caatagacga cacggggaag tgaattacta ccttacgcag tttttgagcg gacatgggtg      4320
     ctttcgagcc tacctacacc gcttcaagat agaggataat ccaaattgcc cagtatgttt      4380
     ggaagcaaac gaagatgcgg agcatgtctt ctgcaactgt tcgcgatacg aaatggaacg      4440
     agaagaactc gagcgttacc ttcagactag ggtgacccct gagtcaatga tgacagctat      4500
     gctagcgtca aaagatggct ggtgcgcagt aaacaactac gtaaggacca ttatcaagaa      4560
     ggttagaaat gacgaagaga atagaaggga aggacaaggc gaaacagctg agtaaaactg      4620
     ttgctagacg aaggccacta ggtaatagat acgaaacgct cctcggactg atgcagagga      4680
     acgtaggtca cagagttgag ctctcactcc cctgcccgat gcagaggaac gtaggagcta      4740
     gggttgagta cctctaagtg ctcctcagac cgatgctgag gaacgtaggt aactgagttg      4800
     agcccagact ccctcacccg atgcagagga acgtaggtgt cggggttgag tctgtccaga      4860
     ggatggccgg tcgatgctgc tcgaagtaga cgaccggacg atgcggcagg aagcagacgg      4920
     ctggacgatg cagaaggaag aagacggcag gacgatgcag aatgaagaag acgagtttga      4980
     tcctgaaccc ctaatcacct tggtggatgg gggatgtatg aaaatgtcaa acttcaaagg      5040
     agaagccaaa aaaggctagt taacgggccc cacggaagta ttgttcaacg atagtacctg      5100
     tggggatccg gtgtcagagg gccacttgtg cagagcttgc tctgcctacg ccacataaaa      5160
     aaa                                                                    5163
//
ID   LINER1-2_NVi repbase;    DNA;    INV; 5260 BP.
XX
AC   .
XX
DT   09-APR-2009 (Rel. 14.04, Created)
DT   15-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; LINER1;
KW   LINER1-2_NVi.
XX
NM   LINER1-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5260
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 787-787 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           215..1753
FT                 /product="LINER1-2_NVi_1p"
FT                 /translation="MDSELIITLPQAGQALQPTPDVGSDRVKAPVADAGSM
FT                 DVGGSQLTQTRQEVIEVGHSALKGRLASSDASGCDGVINRGMHEVWSKIQT
FT                 ADRAEEELMDKIQNHLDKMDAVVGPAKNIHKSVKDDMRKVMSFWKRLISVR
FT                 EASSKTKSSFGLMMSNSSRTSLTSEEKREVETPRKRKERSPTQNETNKKRK
FT                 EEDKTPKHGQSAPLATTSSTTQCPPPTTGTLPPWQRVETRKKKKKKEKEDD
FT                 KINNGVVDQKGTRKSKPPRARPTRPEALIIKATDGKSYADILRKMKADPKL
FT                 KMLGDSVNRIRKTAVGDLLLELQRTSEGKATELRQAVQEVLEEGVTVRTLQ
FT                 DVEVFEVKDLDVLTTKEDIVEALRREFQDSGSNAVEETAVKSVRKAYGDTQ
FT                 TAVIQMPAKMAQQMIAKQKIRIGWVVCRIREIKRNARPLRCYKCLGFGHIG
FT                 KNCTVTQDRSNHCYKCGVEGHNARDCKNKPSCVLCQERGATEKSDHAAGSY
FT                 TCPVYRAAVEKLKKRR*"
FT   CDS           1705..4776
FT                 /product="LINER1-2_NVi_2p"
FT                 /translation="MPSIPSGSREVEETKIMKIVQLNLNHCETAQDLLNQY
FT                 VHETEVDVAIICEPYRALDETSWETDDTGRAAIWACGNVAFQEKMLTSEEG
FT                 FVRAKIAGIHVYSCYASPNAPIEQFERQLDRLVQDIAGRKPVIIAGDFNAW
FT                 AVEWGSQRTNQRGRVLLEASALLDLVLVNQGSTNTFRRGDAGSIVDLTFVS
FT                 SCLIGSIDKWTVSEHYTNSDHQAIIMEVRKSEQRPSASTRTNRVGWKTKDY
FT                 DKEMFLLALEELQLSGTANSKAEQVMGNITRACDAAMPRRVPNCRRPPVYW
FT                 WDKEVESARSECHRTRRREQRARKKYYKTGRGQEIVDARGQEMKDAKRKLK
FT                 KTIRENKRRCLKELQDEVEQDPWGRPYKIVMKKIKGSYVPPPKCPELLHRV
FT                 VTTLFPRQLEEPSVIERGANEEAVPPITIKELLAACRRVGNNKAPGPDGIP
FT                 NIALKHAIHAHPEVFVDLYNACLEEGTFPTNWKKQRLVLLPKGKKPPQDSS
FT                 SYRPLCMLDTPGKILERIICVRMDHFIEGKGGLAEHQYGFRKNRSTLDAVS
FT                 LVIDTAQTAIEGKRWKGGKKKYCAIVTLDVKNAFNSAKWSEIHEALRKQDV
FT                 PLYIRRMMSDYLKDRILLYDTEDGTKTYKVTGGVPQGSVLGPPTWNIMYDG
FT                 VLRLQLPEGATVVGFADDIAVVVVAKHKEEVTEIAEEATRIIHEWLTETGL
FT                 ELASHKTEVILISSRKKMEEIKLTVDGHEIASQPTIKYLGITIDARLTFKQ
FT                 HLEIVSDKAAKVGAALSRLMPNVGGPTQKRRLLLASVTTSIMLYGAPIWAD
FT                 AMRVKSYARMLTTVYRRSALRVASAYRTVSDNAVCIIAGMPPIDLLAMESK
FT                 EVFQTKRRTSDKTQKEIWDAARKKTMAEWQTRWDVSDKGRWTHRLIPKIED
FT                 WTGREHGEVNYYLTQFLTGHGCFRAYLHRFKLDDSPNCPACLDANEDAEHV
FT                 LCDCSRYQMEREELECYLQTRVTPESMMTTMLTSEDGWNAVNNYVRTILKK
FT                 VRNDEEKRRQRQGETAE*"
XX
SQ   Sequence 5260 BP; 1729 A; 1132 C; 1437 G; 962 T; 0 other;
     catacacaca cacacacaca cacacacaca caactccgct acgccggtcc caagcccggg        60
     gccccaccac acaagaggtg gggaaggagg agggggagga gtagcaacct cgttaaaata       120
     accaaggctc atctggcccg gatgacagca ccttgttaaa gggctccttc ctaggataca       180
     ggatagggga agaaaccccg aatataaatc aatcatggac agtgagttaa ttataacact       240
     gccccaagcg ggtcaagctt tacagcccac tcccgacgtt ggttccgatc gggtgaaagc       300
     cccggtggcc gacgcaggct ccatggatgt tggggggagc caattaactc aaacaagaca       360
     ggaggttata gaggtgggtc actcggccct caaaggaaga ttagcctcaa gtgacgcatc       420
     aggatgtgat ggagtcataa acaggggaat gcacgaggta tggtctaaaa ttcagacagc       480
     agatcgtgcg gaagaagagt tgatggacaa gattcagaac catctggaca agatggatgc       540
     tgtagtaggt ccagccaaaa acattcacaa gagtgttaag gatgacatga ggaaggtcat       600
     gtctttctgg aaacggctca tcagcgtaag agaagcgtcg agcaagacca agtctagctt       660
     tggactgatg atgtcaaata gctcacggac ctcgctgacc tcagaagaaa aacgggaggt       720
     agaaacgcca aggaagagga aggaacggtc tcctacacag aacgagacca ataagaaaag       780
     aaaagaagag gacaagacgc caaagcatgg ccagagtgcg ccactagcga cgacttccag       840
     cactactcag tgcccaccgc ccacaacagg gacattacca ccctggcaga gggtggaaac       900
     aagaaagaaa aagaagaaaa aggaaaaaga agacgataag attaacaatg gtgttgtaga       960
     tcagaaaggc actagaaaat ctaagccgcc aagggcaaga ccaacccgac cggaggctct      1020
     aatcataaaa gctaccgacg ggaagtccta cgctgatatc ttgcgaaaga tgaaagcaga      1080
     cccaaaactg aagatgctag gggatagcgt aaataggata cgcaaaacgg cggttggtga      1140
     cctacttttg gaactccaac gcacatcgga agggaaggca acggaacttc gacaagcggt      1200
     gcaagaagtg ctagaagagg gtgtcaccgt aagaacccta caagatgtag aggtctttga      1260
     agtaaaggat cttgatgttc taaccactaa ggaggacatc gtggaagcgc tacggaggga      1320
     gtttcaagat agcggctcaa atgcagtgga ggaaacggca gtaaagtctg tgcgcaaggc      1380
     atatggcgat acgcagacgg cggtcattca aatgccagca aaaatggctc agcagatgat      1440
     cgcaaagcag aaaatcagga taggctgggt agtatgcaga atacgagaga taaagcggaa      1500
     tgcacgtcca cttcgctgct ataaatgtct aggatttgga catatcggca aaaactgcac      1560
     agtaacacag gatcgaagta accactgtta caagtgtgga gtcgaaggac ataatgcaag      1620
     agattgtaaa aacaaaccga gctgcgttct ctgccaagaa agaggagcaa cagagaaaag      1680
     tgaccatgct gctggtagct acacatgccc agtataccga gcggcagtag agaagttgaa      1740
     gaaacgaaga taatgaagat agtgcagttg aacttgaatc actgcgagac agcacaggat      1800
     ttacttaacc agtacgttca tgagacggag gtcgacgtag ccattatatg tgaaccatac      1860
     agggctctgg acgagacatc gtgggaaaca gacgacactg gcagagcagc gatctgggca      1920
     tgtgggaacg tggcattcca ggaaaaaatg ttgaccagcg aggaaggatt tgttcgtgca      1980
     aagatagcag gaatacacgt atacagctgc tatgcttcgc ctaacgcacc gatcgaacag      2040
     ttcgagcggc agttagatcg actcgtgcag gatattgcgg gaagaaagcc agtaattatc      2100
     gcaggcgatt ttaacgcatg ggccgtagag tggggcagtc aaaggactaa ccaaagagga      2160
     cgagtactgc tagaagcatc tgctctcctg gacttggtgt tagttaatca gggtagcact      2220
     aacaccttta gaagaggaga cgcaggatct attgtagacc tgacctttgt tagtagttgc      2280
     cttattggct caattgacaa gtggaccgtg agtgaacact acacaaatag tgatcaccag      2340
     gccataataa tggaggtaag aaaatcagag cagagaccca gcgcgagtac aaggaccaac      2400
     agagtcggtt ggaaaacgaa ggattatgat aaggagatgt tcctactggc actggaagaa      2460
     ttgcaactct cggggacggc gaacagcaag gcggaacagg tgatgggtaa tatcacacga      2520
     gcctgtgacg cggccatgcc gagaagagtg cccaattgta gacgaccacc agtatattgg      2580
     tgggacaaag aggttgagag tgcgcgcagc gagtgtcacc ggaccagaag aagagaacaa      2640
     cgggcaagaa agaaatacta taaaaccgga agaggccagg aaatagtaga tgcccgcgga      2700
     caagaaatga aggacgctaa gaggaagctt aagaagacaa tccgcgaaaa caagcgacgg      2760
     tgccttaaag aactacagga tgaggtcgaa caggaccctt ggggtcgacc ttacaaaata      2820
     gtaatgaaga agattaaagg aagctacgta ccccctccaa aatgcccgga actattacac      2880
     cgggtagtga ccacactgtt ccccaggcaa ctggaagagc caagtgtcat cgaaagaggt      2940
     gcgaatgaag aggctgttcc accgatcacg attaaggaat tgttagccgc ctgcagaagg      3000
     gtaggaaaca acaaggcccc agggccggat ggcattccca atattgcatt gaagcatgcc      3060
     atccatgctc atccagaggt cttcgtagac ttgtacaatg catgtctaga agagggaaca      3120
     ttccccacaa actggaagaa acagcgtctc gtgcttctgc caaaaggaaa gaagccaccc      3180
     caggattcct catcatacag accgctctgc atgttggaca ccccgggtaa gatcctggaa      3240
     cgcataatct gcgtcagaat ggatcatttt atagaaggaa aaggtggatt agcggaacac      3300
     caatatggct ttaggaagaa tcgttcaacc ctggacgcag ttagcctagt gatcgacact      3360
     gcgcaaacag cgatagaggg gaaaagatgg aagggaggaa aaaagaagta ctgcgccata      3420
     gttacattgg atgtcaaaaa tgcattcaat tcggccaaat ggagtgaaat acacgaagca      3480
     ctccggaaac aggatgtgcc cttatatata agaagaatga tgtccgacta tttgaaggac      3540
     agaatcctat tatatgacac ggaggacggt accaagacct ataaagttac aggaggcgta      3600
     ccccaagggt cagtgcttgg cccaccgacg tggaacatca tgtacgatgg ggtactaaga      3660
     ctacaattac ctgaaggagc aacagtcgtg ggcttcgctg acgacatagc agtagtggta      3720
     gtagcgaaac ataaagaaga ggtgacagaa atagcggaag aggcgacccg tataatacac      3780
     gaatggctaa cggagacggg tctggaacta gccagccaca aaacggaagt tattcttatc      3840
     tctagtagga agaagatgga ggaaattaaa ctgacggtag atggacatga gatagcttct      3900
     caaccaacca tcaagtactt gggcatcacc atcgatgcaa gactaacttt caaacaacat      3960
     ctggaaatag tcagcgataa agcagcaaaa gtcggcgctg ctctatcacg attgatgcca      4020
     aatgtaggag gcccaactca gaagcgaagg ttactcttag ccagtgtaac cacatcgatt      4080
     atgctatatg gagccccaat atgggcagat gcgatgcggg tgaaatcgta tgcccgaatg      4140
     ctaaccactg tgtacagacg aagtgcacta agagtggcgt ccgcttaccg tacagtatcg      4200
     gacaatgcgg tgtgcattat tgctggtatg ccgccgattg acctattggc gatggaaagt      4260
     aaggaagtat tccaaactaa aagaagaaca agtgacaaaa ctcagaagga gatctgggat      4320
     gcagcaagaa agaagacaat ggccgaatgg caaacaagat gggatgttag tgacaaaggg      4380
     cgatggacac atcgccttat accaaaaata gaggattgga ctggaagaga acatggggag      4440
     gtcaactact acctcacaca gtttttaacc gggcacggat gcttccgggc ttatctgcac      4500
     cgatttaaat tagacgacag tccgaactgc ccagcttgtt tggacgctaa cgaagatgcg      4560
     gagcatgttc tctgtgactg ttcgcgatac caaatggagc gagaagaact cgagtgttat      4620
     ctccagacca gagtgacacc tgagtcaatg atgacaacta tgttgacgtc ggaggatggt      4680
     tggaacgcag taaacaacta cgtaaggact atcctcaaga aggttagaaa tgacgaagag      4740
     aaaagaaggc aaagacaagg cgaaacagcg gaataaaaat gtagctagac gaaggtcact      4800
     gagccgtgtc ggggttgagg ctgtccagag gatggccgga cgatgccgca cgaagcagac      4860
     gaccggacga tgcggaaaga agcagacgcc cggacgacgc agaaagaaga aacgtgatga      4920
     cgaccacatc aattagaaga gggcgtaaaa gcctttcccc cccccccccc cccccgcgaa      4980
     gcactactcg acggtcgtac cgcggggaac aagggcacag aagatggagc taggtgcgcc      5040
     tttaccgagg gtcgataaag gcaaagaggg cgttccttgg tacggttggg tgtttttcat      5100
     ctggccgtaa aaaggatggg tttagtcggt gtgaatccga cacacggctg acattgcgga      5160
     tggggctgtt tcgacgaccc cataaacaaa gtcacgctat ggtctttcta agattttccc      5220
     taacacctct tctccgagag aaaaaaaaaa cacacacaca                            5260
//
ID   LINER1-3_NVi repbase;    DNA;    INV; 5049 BP.
XX
AC   .
XX
DT   10-APR-2009 (Rel. 14.04, Created)
DT   15-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; LINER1;
KW   LINER1-3_NVi.
XX
NM   LINER1-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5049
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposon from Nasonia parasitic wasp.";
RL   Repbase Reports 9(4), 788-788 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           485..1870
FT                 /product="LINER1-3_NVi_1p"
FT                 /translation="MCWGHVSCPHRRGDPGGRTHAGMKKNAYNMGTTNELG
FT                 ENSQENLEVETLRVPTTQDGGYPIHKSSSSTSIGSAMSAAGYRYESGTVGE
FT                 ESQTTREWLQAHASLRDKIREVRDMTREMTKTLDKQKGVNSKIKDGLPLIG
FT                 SMLIEAVTLLDKMEDVVKRQPLQQPRADNAKSQKTAKSKKRVRASSDGGGG
FT                 TPAKKDKKDVSAPSTSRDSEGNGQTSHGQTQWEVAAGRKAKKKQKDKPEQT
FT                 QPKKREEKVPRQRTDAILIKPESGKTYADILGQMKAHVKPEELNTEVKFVR
FT                 KTRQGGVLVGVGKSNDKMKSLQKAIQDAIGQVGTIENKISKITLEIRDIDG
FT                 LTTKEEVNSAIAAVTDCGEEDVKIHLFEPNTREQRMAVELDQTKAAALLKK
FT                 GKIRIGWVNCRVRVRASVTRCYRCLGCGLXMHRXXXXXVFFAKTPRRLRTG
FT                 RCTLQAPERAQSSGRX*"
FT   CDS           1893..4568
FT                 /product="LINER1-3_NVi_2p"
FT                 /translation="MARILQGNLHRSRLAHDLLTQHVREQKVDVLLISEQY
FT                 KNLDPPFWVSNDEKTAAIWVPGRGLANTGTGEDYVRGRMGRITFFSVYLSP
FT                 NLTAADFTRKLGALEDAIREVPGEIVIGGDFNARATEWGMPTTNPRGRAIL
FT                 EMAARLTLIVANEGNTTTYRRTGFGESIPDVTFASEMTIRNIRDWHVTEEY
FT                 TASDHQYILFNINEDRQTSTRRNHSRAPRWNTRRMNRETLAELIQSANLPS
FT                 NGIPHELGGRERAETIVERTTNLITEICDATMPRVSTSHQRRPVYWWTDDI
FT                 AELRKENFHARRRAQRAWKQKRPEARDLSKRQDESRKILRDAIKESKRRCW
FT                 TKIIDDVEKDPFGDGYAIVTRKMGEMKRNQSXEPXEAEKMEXVIHXLXSHT
FT                 THQTPEXRHXSNGXREEADFXGQXHRVSVVPQPELLLEMYNQXLVQGVFSS
FT                 RWKRARLVLIEKPKKEADTDTSYRPLSLLDTMGKTGEALVKPRILRAVREA
FT                 GDLSDKQYGFRKGRSTIGAVREVTDTVKKVEEVRHATRDIVILVTLDVKNA
FT                 FNSARWTDILAALESFGMPRYIMRLTEDYLRDRVIEYDTKEGXRRRPITAG
FT                 VAQGSILGPDFWGILYDGLLKLEMPGDVMLVGYADDVAAVITARNVGIAQA
FT                 KLNAIMSRVLWWMANHGLTLALDKTEIVLLTGKRIPTIIPMKVGGETITTK
FT                 PSAKYLGITLDTKLNYGEHLDRVCKKATTRIAQLSRLMANVRGPRPTVRRL
FT                 LMATTNSILLYGAEVWADAMTMNKYRKKIMAVQRRGALRIACSYRTVAAEA
FT                 SMVIAGVIPVDLLAIERKRIYEARLASSSISIAVEEREITMRNWQTRWTDY
FT                 PKARWTRTLIKDVGPWVDRKWGEVNFYLTQFFLRSRIL*"
XX
SQ   Sequence 5049 BP; 1517 A; 1152 C; 1457 G; 896 T; 27 other;
     aataataata ataataatcc acgcggggaa gcctgacacc ccgtatgtgg cgcgtccccc        60
     gggtggcgga tgggggagtg ctcgccgagg cacacacctc ggagggtaga gcagaaataa       120
     aatatgctcc gtggaccaaa tcaggccgcc gcgtttgccg tgcggtgcga cccgtaagct       180
     gccaaaagga gatcctggat ggagaggcga tctaacggtc tctctaagac ctacggttgc       240
     gtgccgaagt gacccgaacc atctttggct cccgctgaca gcaagacggg aggccggtta       300
     cctagctagt atcggtcaac cggctcgagc gagtgcgtga tattgtgtga catccgccgg       360
     aaactctcca gagagccgag cacctttgtt cggagtggga ggctcgagag agtggaggtg       420
     ggctagtgcg atagcgcgtg ctataccctg acatgatgta cccagtctgg caccgcctac       480
     agtcatgtgt tggggccatg tcagctgccc ccatagacgg ggggatccag ggggtcggac       540
     acatgccggg atgaagaaaa atgcttataa tatgggaacc acaaacgaac tcggggaaaa       600
     ctcacaggag aacctggaag ttgaaacctt aagggtgcca acaacgcaag acggtggata       660
     tccaatccac aaatcaagca gcagtaccag tataggtagc gccatgagtg ctgcaggata       720
     ccgatacgag agtggaacgg taggtgaaga gagccagacc acaagggaat ggctacaagc       780
     ccatgccagc ttgcgtgaca agataaggga ggtgagagat atgaccaggg aaatgaccaa       840
     aaccctggat aagcagaagg gcgtgaactc caagattaaa gatggattac ccttaatagg       900
     atcaatgttg atcgaagctg tcacgcttct tgacaagatg gargatgttg tgaagaggca       960
     gccccttcaa caacctagag cggacaatgc aaagtcccaa aaaacggcaa agtcgaagaa      1020
     gagggtacga gcatcatccg acggaggcgg cggtaccccc gccaaaaaag acaagaagga      1080
     tgtaagtgct ccctcgacaa gtagggacag cgaggggaac ggacagactt ctcatggtca      1140
     gacacaatgg gaagtagctg ctggcaggaa ggcaaaaaag aaacagaagg acaaaccgga      1200
     gcagacccaa ccaaagaaga gagaagagaa ggttccacgt cagaggacgg acgccattct      1260
     gataaagccg gagagtggca aaacctatgc tgacattttg ggtcagatga aggcacatgt      1320
     aaagccggaa gaactgaaca cggaggtcaa gttcgtccgt aaaacaagac aaggtggcgt      1380
     tctagtgggg gtaggtaaga gcaacgacaa aatgaagtca ttgcaaaaag ctatccaaga      1440
     cgcaatcgga caagtaggca cgattgagaa caagatctcc aagataacac tagagatcag      1500
     ggacatcgat ggacttacga caaaggaaga ggtcaacagt gctatcgcgg ccgtgacgga      1560
     ctgtggcgaa gaggatgtta aaatccatct gttcgagcca aacacgagag agcagaggat      1620
     ggcagttgaa ttggaccaga ccaaggccgc cgccctgctc aaaaaaggaa agattcgcat      1680
     cggttgggta aactgccgag tgcgggtgcg agcgagcgtc acgcgatgct accgttgcct      1740
     tggctgtgga ttggawatgc accgtcycra cmsawmargt gttttctttg caaagacgcc      1800
     aagacgcctg aggacaggac gatgcacact ccaggcaccg gagcgtgcgc agtcttccgg      1860
     acggcyctaa acgcaagcaa gacccaaaga taatggcgag gatactccaa ggaaacctgc      1920
     acagaagtag gctcgcacat gatctgctaa cccaacacgt tagggagcag aaagtggacg      1980
     tcctactgat cagcgaacaa tacaagaacc tagacccacc cttttgggtg tcaaacgacg      2040
     aaaaaaccgc cgccatttgg gtgcccgggc gtgggttggc gaatacgggt acgggagaag      2100
     actacgtaag gggaaggatg ggtcgcataa cattcttcag cgtatatctg tcaccgaacc      2160
     taactgccgc cgactttaca aggaaactag gggcattgga ggacgctatt agagaggtcc      2220
     ccggggaaat cgtgatcggg ggcgacttca acgcgagggc cacggaatgg ggcatgccga      2280
     cgacgaaccc aagaggcaga gccatcctcg agatggcagc caggctgacc ttgatagtag      2340
     cgaacgaggg taataccact acctaccgta gaacaggctt tggggaatcc ataccggatg      2400
     taaccttcgc aagcgaaatg acgatccgca acataagaga ctggcacgtc acggaagaat      2460
     atacagctag cgaccaccag tatattctat tcaatatcaa cgaagaccgt caaaccagta      2520
     caaggagaaa ccatagtcga gcgccaagat ggaacacccg acgcatgaac cgagagacac      2580
     tcgcggagtt aattcaaagt gcgaacctcc catccaacgg gatcccacac gaattaggcg      2640
     gacgcgaaag agcagagaca atagtagaga gaactactaa tctgattact gagatctgcg      2700
     atgcgaccat gcccagggtg tctaccagcc accagagaag accggtgtac tggtggacag      2760
     acgacattgc ggagcttagg aaagaaaatt tccatgctag aagaagggct caaagagcct      2820
     ggaaacagaa aaggcctgaa gcccgggacc tttccaaaag acaggacgaa tcgcgaaaaa      2880
     ttctcagaga cgcgataaaa gagagtaagc gccgctgctg gacaaagatc atcgacgacg      2940
     ttgagaaaga cccattcggc gatggatacg cgatcgttac acgaaagatg ggggaaatga      3000
     aacgaaacca aagcamggaa cctatrgaag ctgaaaaaat ggaagamgtr atccatrggc      3060
     tstyatcaca cacaacacat cagacgccag aaaracgcca caraagtaac ggcgkacgag      3120
     aagaagctga cttcaycggg caaaytcatc gcgtmagcgt ggtccctcar cctgagctgc      3180
     tcttggagat gtacaaccag tscctggtgc agggagtttt tagctcgcgg tggaaaagag      3240
     cgagacttgt actgattgaa aaaccgaaaa aagaagcgga tacggacact tcctataggc      3300
     cactgagtct tttagacaca atgggaaaga cgggggaagc actggttaaa ccgcgaatac      3360
     taagggccgt acgcgaagcg ggagaccttt ccgataaaca gtatggcttt agaaaagggc      3420
     gatccaccat aggggccgtt agagaggtaa cagacacggt aaagaaagta gaagaagtta      3480
     gacacgcgac tagagacatt gtgattctag taacgttaga cgtaaaaaac gcgttcaact      3540
     cggcaagatg gaccgacata cttgctgcct tagaatcatt cggtatgccg cgatacatta      3600
     tgcgtcttac ggaagattat ctgagggacc gggttatcga gtatgacacg aaagaagggc      3660
     rcagaagaag acctataact gcaggagtag cgcagggttc gattttgggt ccagacttct      3720
     ggggtatctt gtacgacggg cttctaaaac tcgaaatgcc gggggacgtg atgctcgttg      3780
     gatacgcaga cgatgtggcc gcggttataa cagcacggaa tgtgggcatt gcgcaagcga      3840
     agttaaacgc gatcatgagc agagtgctat ggtggatggc gaaccacgga ttgactttag      3900
     cgcttgataa gaccgaaatt gtcctattga caggaaagcg gataccgacc atcataccta      3960
     tgaaggtagg cggcgagact ataacgacga aaccatcagc caagtatcta ggaataactc      4020
     tagacacaaa gctgaactac ggggaacacc tagatcgcgt ctgtaaaaaa gccacgacta      4080
     ggatagcgca acttagccga ctcatggcta acgtccgtgg gcctaggcca acagttaggc      4140
     ggctactcat ggcgaccact aactctatcc tgttatatgg agcagaggtg tgggccgacg      4200
     ctatgactat gaataagtat cggaaaaaga ttatggcggt acagcgaagg ggggccctta      4260
     gaatagcatg ctcctaccgg acggtcgcgg ccgaggcatc gatggtaatc gcgggggtaa      4320
     tccccgtgga tcttcttgcg atcgaacgca agcggatcta cgaggctcgc ttagcgtcga      4380
     gtagcatctc gattgccgtg gaagaaagag aaataacaat gcgcaattgg cagactaggt      4440
     ggaccgatta tccaaaggct agatggacta ggacccttat aaaagatgta ggtccgtggg      4500
     tggacaggaa atggggggag gtcaactttt accttaccca gttttttctc cggtcacgga      4560
     tactttagga gctacctgtt cgcgatgaac agggtggcaa caccggggtg taagtactgc      4620
     ggtgacgaac gggacgacgt gagacacacg ttttttgact gcccccactg ggctgaaaag      4680
     cgtagagtac tggagctgac gataggggcg ttcacgcccg agactgtagt cgaaacgatg      4740
     cttggcagca agcagaactg ggrcgagata acggcgtacg tggagacggt tctccgcgcg      4800
     aaaaacaatg acggttgttt acaagactag ttgacggcta gcacagctta agacaggcga      4860
     ccccccgaag gaatgcgaaa gcggttaccg ggggggtttt cgcggcccta tgagaggtgg      4920
     agttttagtg agtatgcctg gcgttgtccc gcgtcaggag agtctcacac acggggagcc      4980
     tcgcacggct cctgtcatgg tgcattaagc atttctccaa ctctccggat aaacaaaaaa      5040
     aaaaaaaaa                                                              5049
//
ID   Lm1         repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   03-DEC-2012 (Rel. 17.12, Created)
DT   03-DEC-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm1.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RA   Bradfield J.Y., Locke J. and Wyatt G.R.;
RT   "An ubiquitous interspersed DNA sequence family in an insect.";
RL   DNA 4(5), 357-363 (1985).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 195 BP; 41 A; 48 C; 57 G; 49 T; 0 other;
     gccggccgcg gtggccgagg ggactgaggc gctccagtca cggtctgcac ggccactagg        60
     gtcgggggtt cgaatccccc ctcgggcatg gatatttgtg ccgtcctagt tctaagtagt       120
     ttcataagta gtttgtaagt ttagggactg atgaccccgt agttaagtcc cataagcttt       180
     acaaacattt gaaca                                                        195
//
ID   Lm1B        repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   05-MAR-2014 (Rel. 20.01, Created)
DT   05-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm1B.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-213
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 344-344 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 213 BP; 41 A; 51 C; 62 G; 58 T; 1 other;
     gccggccgca gtggccgagc ggtctgcggc gcgccagtca cggtctgcac ggccgctacg        60
     gtcgggggtt cgaatcctcc ctcgggcatg ggtgtttgtg ttgtccttag cgtaagttag       120
     tttaagttag tcaagtaatt agtgtgtaag tctagcgact gataaccacg nagtttggtc       180
     gcataagacc tcacacacat ttgaacattt ttt                                    213
//
ID   Lm2         repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   23-FEB-2014 (Rel. 20.01, Created)
DT   23-FEB-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-203
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 345-345 (2015).
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 203 BP; 38 A; 42 C; 65 G; 58 T; 0 other;
     gccgcggtgg agtagccgag cggtctaaag cgtctcgctg cggagcgcgc ggttgctcgc        60
     cgtggaggtt cgagtcctcc ctggggcatg ggtgtgtgtg tttgtcctta ggttagttta       120
     cctaggttta agtagtttgt aagctacgga ctgatgacca cgcagtttgg tccgatagat       180
     ttacaaacat ttgaacattt gaa                                               203
//
ID   Lm2B        repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   24-FEB-2014 (Rel. 20.01, Created)
DT   24-FEB-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2B.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-202
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 346-346 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 202 BP; 41 A; 45 C; 59 G; 57 T; 0 other;
     gccgcgcggg agtagccgag cggtctggag cgccacgtta cggatcgcgc ggcctcccgc        60
     gtcggaggtt cgaatcctcc ctcgggcatg gatgtgtgtg ttgtccttag gttagtttaa       120
     cttagtttaa gtagtttgta agtctaggga ctgatgacca acgtagtttg gtcccataga       180
     attacaaaca tttgaacatt tt                                                202
//
ID   Lm2B2       repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   05-MAR-2014 (Rel. 20.01, Created)
DT   05-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2B2.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-200
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 347-347 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 200 BP; 33 A; 39 C; 68 G; 60 T; 0 other;
     gccgcgcgga atggccgcgt ggtctaaggc gtcatgctac ggactgggcg gccgttcccg        60
     ccggaggttc gagtcctccc tcgggcatgt gtgtgtgtgt gtgtgtgtgt gtgtgtgttg       120
     tccttagtgt aagttagttt aagtagtttg taagtctagg gactgatgac catagcagtt       180
     tggtccaata ggtttacaaa                                                   200
//
ID   Lm2C        repbase;    DNA;    INV; 207 BP.
XX
AC   .
XX
DT   03-MAR-2014 (Rel. 20.01, Created)
DT   03-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2C.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-207
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 348-348 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 207 BP; 42 A; 47 C; 60 G; 58 T; 0 other;
     gccgcggcag aatagccgtg cgcactaagg cgcccagctg cggtgcgcgc ggccgttcgc        60
     cgtcgggggt tcgagtcctc cctcgggcat gggtgtttgt gttgtcctta gcgtaagtta       120
     ctttaagtta gtgtaagtag tttgtaagct tagggactaa tgaccaacgt agttaagtcc       180
     cttagattta caaacatttg aacattt                                           207
//
ID   Lm2C1       repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   03-MAR-2014 (Rel. 20.01, Created)
DT   03-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2C1.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-199
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 349-349 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 199 BP; 40 A; 47 C; 59 G; 53 T; 0 other;
     gccgcggcgg agcggccgag cgcattgagg cgctatgctg cgatgcgcga ggccgttccc        60
     cgtcgggggt tcgaatcccc cctcgggcat ggatgtttgt gtcgtcttta gtataaggta       120
     gttcataagt agtttgtaag tttagggact gatgaccccg cagttaagtc ccttaagctt       180
     aacaaacatt tgaacattt                                                    199
//
ID   Lm2C2       repbase;    DNA;    INV; 198 BP.
XX
AC   .
XX
DT   05-MAR-2014 (Rel. 20.01, Created)
DT   05-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2C2.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-198
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 350-350 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 198 BP; 38 A; 46 C; 58 G; 56 T; 0 other;
     gccgcggcgg aatagccgtg cgcactgagg cgccctgcta cggtgcgcgc ggccgttcca        60
     cgtcggaggt tcgagtcctc cctcgggcat gggtgtttgt gttgttctta ggataagtta       120
     gtttaagtag tttgtaagtt tagggaccga tgaccactgc agttaggtcc cataacttta       180
     caaacatttg aacatttt                                                     198
//
ID   Lm2D        repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   05-MAR-2014 (Rel. 20.01, Created)
DT   05-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2D.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-199
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 351-351 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 199 BP; 41 A; 45 C; 60 G; 53 T; 0 other;
     gccgcggtgg agtggccgag cgttccaagg cgcctagctg cggagcgcgc cgctgctcgc        60
     cgtcggaggt tcgagtcctc cctcgggcat gggtgtattt gttgtcctta gcataagtta       120
     gtttaagtag tttgtaagcc tagggactga tgaccagagt agttaagtcc catagattta       180
     caaacatttg aacatttga                                                    199
//
ID   Lm2E        repbase;    DNA;    INV; 201 BP.
XX
AC   .
XX
DT   05-MAR-2014 (Rel. 20.01, Created)
DT   05-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Lm2E.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-201
RA   Jurka J.;
RT   "SINE elements from the migratory locust.";
RL   Repbase Reports 15(1), 352-352 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 201 BP; 35 A; 47 C; 63 G; 56 T; 0 other;
     ggccgcggcg gattagccgt gcgcactggg gcgccgtgct gcggtgcgcg cggccgttcg        60
     ccgtcggggg ttcgagtccc ccctcgggca tgggtgtttg tgttgtcctt aggttagttt       120
     accttagttt aagtagtttg taagctacgg actaataacc aagcagttga gtccgataga       180
     tttacaaaca tttgaacatt t                                                 201
//
ID   LOA         repbase;    DNA;    INV; 7779 BP.
XX
AC   X60177;
XX
DT   04-JUN-2009 (Rel. 14.06, Created)
DT   05-JUN-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element.
XX
OS   Drosophila silvestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; planitibia group; planitibia subgroup.
XX
RN   [1]
RP   1-7779
RA   Felger I. and Hunt J.A.;
RT   "A non-LTR retrotransposon from the Hawaiian Drosophila: the LOA
RT   element.";
RL   Genetica 85(2), 119-130 (1992).
XX
DR   EMBL/GenBank/DDBJ; X60177; Positions       1    7779.
XX
CC   This DNA sequence may contain a portion of a Gypsy-like LTR
CC   retrotransposon whose protease domain is fused with the LOA ORF2
CC   protein.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..1816
FT                 /product="LOA_1p"
FT                 /translation="MVVAVSDEIILAIRNLNISNNQQEARIESGVEQNIRT
FT                 AVDNRSTDSIERPDKVSSIISSWHVQFCGSFNEISVEDFIYRINRLTDECL
FT                 NGNWNLLYQFAIILFCGPALQFYWRFQRTNSRSNWFQLSDALRERYREQRP
FT                 DEKIKDSLRSRKQRSGERFVQFLDAIQCIADTLREPMTDRELVANIKRNVK
FT                 VEMRLELLHVASPNIATLRTECHKHEQFCLSMSSKPVPRPTNTSHFLNEVI
FT                 HEEESIDTSHIYSTESTEINAIRSVDRIKCWNCNEVGHRYQDCIKTRRRPG
FT                 VFCYGCGRFDTTHRKTCNRMSTEHNQLISTYSLGSTICTPPIPNNNTSLSK
FT                 NLRCKQLHGNLN*"
FT   CDS           1786..7716
FT                 /product="LOA_2p"
FT                 /translation="MQTVAWQLELILFKKKIIASVERKYSICKSIRFPKVR
FT                 IDEFWRNKRSPKNITFISTIRNRNDSASIFTNLMLFGQSYLALLDSGANKS
FT                 VIGGQLAIRLLAADLKLKKLKGNFRTADGQHENVLSALLIPLEYDLLQKEF
FT                 EFMILPSITQDIICGMDFWKSFGINISTTTVISELDYSDQTCNNRCLVLQR
FT                 GPGLKNVWDGSERAELRHQAGRGLRIGNGLPAGRLAANNTRFVVNKQSRTN
FT                 SGRIMSIVPTRRLYCRLPKCSLPQPPLSPHIFTYPILSPHLTPGWTKASFE
FT                 PCRESAWLAARIKTSQVVNPSILHTVLLQQLLGDAAGTRNFGCEAWGRWLV
FT                 HPDHRAQHRTPRGNPLSAQRGRESSCHLGVNSVDWMTRTGGISAVQGSNGT
FT                 SNQELTPDEALKKAKEPREEIAAHAPRPKRRTSNLTPPVATPKRICPEVVG
FT                 ATRGSATAKVLNKNGAGNLDLRPSTSRAAATKPSSPTPTEPRLSYADMAKN
FT                 VRVAVLPVDFPRVMLSHGDLSVLEEAIIDEVIASGGDIAASFTGIHFRVGF
FT                 LLIECSGEASAAWLRTATSRLKSWKGVPLKCKVGDDIPSPHCITLFCPRSV
FT                 GRSTESLLVLLRNQNRIETDTWKVISRRNEGGGALLVIAIDELSKCILWRR
FT                 GTMSSPLRTIPVSGLKKKTGAKPQPAPTGKEDVSVGNITTSDTPASEQSSP
FT                 TAQPADPSEDLAEDEELADVTLCQEGILGEEDIPMSSQELAEELQDAAVAD
FT                 VVMTNSGDGCSSRPHSPCQLEPSQKYMTKGINTGLAQVNIHRAKAASAVLA
FT                 RMFTNKHLGLALVQEPWVNNGIKGLFTADSKVIWDRRDPAPRACIMVRKSI
FT                 NFNILSEFLTRDCVPILVYTKGSAVSMVIVSAYFAGDAPCPPPEVERLVEY
FT                 CRKEKMPVLIGCDASAHHTIWGSSDIHLRGECLTDFIFKYNLELENVGSAP
FT                 SFVTRIREEVLDITLISRSLKPHLREWHVSQEESMSDHRTILFNLKLNTDS
FT                 STPGRNPRRTNWEGYKSTLGLNLANGLSGTPRNPIELDRATDDLNKCIISA
FT                 FEENCPVGKRFMEKDAPWWNDSLERLRVTTRRLFNKAKRDGIWEQYRECLT
FT                 SYNKEIRKAKRKNYRDFCESIVSTSEGARLHRALAKRTPDANLALKRGDNS
FT                 FTISNKQRLELLFETHFPGCTPLQEEAIVGISRYRPSTDDWACAKSTVTKE
FT                 KLNWAIGTFQPYKSPGMDGISPAFLQTGQDILLSRIRKALVSSLALGHIPS
FT                 ACRRARVVFIPKAGKKDITDPKSFRPISLTSFLLKTLEKMVDYKIRSTLLK
FT                 QRPLHPAQHAYRVGRSTDTALYQLQRTLSAAIDYKEVALCAFLDIEGAFDN
FT                 TSHDAIKDTLSRRGLDPTTSRWILALLRSRQVTASVHDSTVTVLTTKGCPQ
FT                 GGVLSPLLWSLLVDELLNRLTNSGIQCQGYADDIVIMARGKFEESLCDMVQ
FT                 SGLRITYDWCKEVGLNLNPTKTVIVPFTRRHKLQRMRQIWLSGTPLERSRE
FT                 VKYLGVIFDSKLNFGTHVQNAMLKCSRALYTCRSIAGKSWGTSPKIVRWLY
FT                 LMVVRPMLTYGVIAWGDRARLITVKKQLQKLQRMACVCMTGVMCTCPTMAL
FT                 EALMELTPLHHIIRLKQKATLLRMSAEGVGCPTLSNELPLLLQPRDEMKVE
FT                 YIFERNFTVYMSSKRNWTTLEEVHPMKPHTIRWYTADHSPTRAQVSVWWAL
FT                 GCHTTNPYGTHTSIFQAEVCALGKCAILTLKRNYRNTDTSILSDSQAALNA
FT                 ITGTKITSKIVQEARSKLNLLGTHNRLACDGSRATGIYRVTRRLISRREWG
FT                 QKGPLIGPEPYCGIGRHTIRLVLRNEEKQVRQQSWSEAVGLRQARCLLGGY
FT                 NLKRFKQVITMGKNNLRILTGLMTGHCRLRSHLTRLGIYSSDLCRFCEIEE
FT                 ESSVHILAECVALARRRCSILGMHVLNFRDIEDLNPTKILTFVREVGLMEE
FT                 L*"
XX
SQ   Sequence 7779 BP; 2297 A; 1808 C; 1900 G; 1774 T; 0 other;
     ttaaccaccg ttagcaaaaa acattaatga ttttgatttc tttattggct tcatgtcgat        60
     ctaaactagt tgatcgattt ccaaatcaat accacaatta ttgttaaaag agaatgagat       120
     tgttcttggt agattatttc gccactttcc tcttttccga aaacaattct tcaaattaaa       180
     gtagaatcag taattggtta agggaaatca cgattgatat atttataatt tcaagatgaa       240
     accattttat taacggttaa gtctcaacgt gattcataaa ttcataaatg gcagtgcagc       300
     gaagtaacga agatatagca gctagcataa atgctgatat ggtattgtgt aacatttgta       360
     gagccccagt tctgattaat actgaaattg cggagacccc ttgcaaacat aaattccatc       420
     ggtaacctga ttacgtacta atgaaacatg tccgtcgtgt agaacgccat gtacactttc       480
     ccagttaatt gatgtcaaaa gccagtcatc gaaagggcct tttcaagttc ctcgaacagt       540
     tcgtggtggt catcgagttg gtgctacaca taggaatata cctaatatca aatccaataa       600
     ctctggagca caggcttaca ggcctaatac taatttcaat gtcgggaata gacgggattc       660
     attcaatgct tcgcttgacc catccatccc ttctgaacag cgaattcagc aacttatttc       720
     aaactcgtta gatacatttc gagccagtat ggttgtagca gtgtctgacg agatcatttt       780
     agctataaga aaccttaata tctcaaataa ccagcaggaa gctcgaattg aatcaggagt       840
     cgagcaaaat attcgaacag ctgtagataa tcgaagcact gattccattg aacgacccga       900
     caaagtctca agtattattt cgagttggca tgtacaattc tgtggatctt ttaatgaaat       960
     ttccgtggaa gattttattt accgcatcaa tcgcttgacc gacgaatgct tgaacggaaa      1020
     ttggaatttg ctttatcaat ttgcaattat tttgttctgt ggacctgcat tacagttcta      1080
     ctggcggttt caaagaacaa atagtcggtc taattggttt caactatccg atgccttgcg      1140
     tgagcgatat agagaacaac gcccggatga gaaaataaaa gattctttaa gatctcgtaa      1200
     acagcgaagt ggagaacgtt ttgttcaatt tttggatgct atccagtgta ttgctgatac      1260
     actgcgagaa ccaatgacag atcgggaatt agtggctaat attaaaagaa atgttaaggt      1320
     tgaaatgagg ttagaactac ttcatgtagc ttcacccaat atagcaaccc ttcgaactga      1380
     atgtcacaag cacgaacaat tctgtttaag tatgtcttca aaacctgtgc ctcggccaac      1440
     taacaccagt cattttctta atgaagtcat acatgaggaa gaatcgatag atacttccca      1500
     tatatattct acagagtcaa ccgagataaa tgcaatacgc tcagttgata ggataaaatg      1560
     ttggaattgt aatgaggtag gtcatagata tcaagattgt ataaaaacca gacgcagacc      1620
     aggcgtattt tgctatggtt gtggccgttt tgataccacg catcggaaaa cttgcaacag      1680
     gatgtccacc gagcataatc agttgatatc cacctacagt ctcggatcaa caatttgtac      1740
     cccgccaatt cctaacaata acacgagcct atcgaagaat ctaagatgca aacagttgca      1800
     tggcaacttg aattaatatt attcaaaaaa aaaattattg ccagcgtaga gcggaaatat      1860
     tctatttgta aatcaattcg cttcccaaaa gttagaatag atgaattttg gagaaacaag      1920
     cgatcgccaa agaacattac atttatctct accatccgca accgtaatga ttccgcgtcc      1980
     atatttacaa atcttatgtt gtttggtcaa agctatttag cattattgga tagcggtgct      2040
     aataaaagcg tgatcggagg acaattggcc atacgattgc ttgccgcaga cctaaagtta      2100
     aaaaaattga aaggcaattt tcgcactgca gatggccaac acgaaaacgt attaagtgct      2160
     cttcttattc cgttggagta tgacttatta cagaaagaat ttgaatttat gattctacct      2220
     tcaatcacac aagacatcat ctgtggaatg gatttttgga agtcatttgg tattaatatt      2280
     tctaccacga ctgtaataag cgaattagac tacagtgatc aaacgtgtaa taataggtgt      2340
     ctagtgttac agagaggacc tggtctaaag aacgtgtggg atggttcgga aagggctgag      2400
     ctgaggcacc aggcgggtcg cgggttgcgg atagggaacg gccttcctgc agggaggtta      2460
     gctgcgaata atacgaggtt cgtcgtaaat aagcagtccc ggacaaacag cgggcgcata      2520
     atgtcgatcg taccgacaag gcgcttgtat tgccgccttc caaagtgtag cttaccacaa      2580
     ccgcccctat ctccccacat atttacctac cctatcctat cccctcatct cactccgggc      2640
     tggactaagg cgtcattcga accgtgccga gagtcagctt ggctggcggc acggattaaa      2700
     actagccaag tcgttaatcc atccatcctc cacaccgtgc tgctccagca actattagga      2760
     gatgccgcag gcacaagaaa ctttggctgt gaggcatggg ggcgatggct ggtacaccca      2820
     gaccaccgcg cccagcaccg aacgccgcga ggcaacccgc tcagcgccca aagaggaagg      2880
     gagagttcct gccacctagg ggtcaactcg gtggactgga tgacccgaac cggaggaatc      2940
     tctgcggttc aagggtcaaa tggtacctcc aatcaggaac tcacccctga tgaagccctg      3000
     aaaaaggcca aagagcccag ggaggagatt gcagcacatg cgccacgccc gaagaggcgt      3060
     acgagcaatc tcacaccacc ggtggccacc cccaagagga tttgcccaga ggttgtgggc      3120
     gctacccgcg gctcggcaac ggcaaaggtg ctgaacaaaa atggggcagg gaatctagac      3180
     ctgcgcccaa gcacgtcgcg tgcagcggcc acgaagccca gctcgccgac acccaccgag      3240
     cctcgcctgt catatgcaga catggcaaaa aacgttaggg tagccgtgtt gcccgtggat      3300
     ttcccacggg tcatgctcag tcacggagat ttgtctgtgt tggaagaggc catcatagac      3360
     gaagttattg cgtctggtgg agatatcgcg gcctcattca cgggcattca cttccgggtt      3420
     ggattcctgc taattgaatg ctccggtgag gcctcagccg cctggctgag gaccgcaaca      3480
     tcgaggctga aatcgtggaa gggcgtgccc cttaagtgca aggtgggaga tgacataccg      3540
     tcgccccact gcatcacgct gttttgcccc aggagtgtgg gtcggtccac cgaatccctg      3600
     ttggttctgc tgaggaacca gaacaggatc gagaccgaca cctggaaggt gatctccagg      3660
     aggaacgagg gtggaggagc cctcctggtg atcgcgatcg acgagctatc caaatgtata      3720
     ttgtggagaa ggggcaccat gtcttctccg ctacggacca tccccgtaag tggactaaag      3780
     aagaagactg gagcaaagcc ccaacctgct ccaacgggca aggaggatgt ctcagtgggt      3840
     aacatcacca catcagacac tcctgcctcg gagcagagca gtccaaccgc gcagcccgcc      3900
     gacccgtcgg aggacctcgc agaagacgag gaactggcag acgtgacgct ctgccaggag      3960
     gggattctgg gggaggaaga catccccatg tcctcgcaag agctggcgga ggagctgcag      4020
     gatgcagctg tagctgacgt cgttatgacg aacagcggtg acgggtgcag ctccaggccc      4080
     cattcaccgt gtcagctgga gccttcccag aagtacatga cgaagggcat caacacaggg      4140
     ctggcccagg taaacatcca ccgggctaag gcagcctcgg cggtcttagc aaggatgttc      4200
     accaacaaac accttgggct ggccctggta caggagccgt gggtgaacaa tggcattaag      4260
     ggcctgttca cagccgactc aaaggtaatc tgggatcgga gagatccagc acccagagcc      4320
     tgtatcatgg taaggaaaag tattaacttt aatatccttt cagaattctt gactagagac      4380
     tgcgttccca tattggtgta taccaaaggc agcgcggtct ctatggtcat cgtgtctgca      4440
     tatttcgcag gggatgcgcc ctgcccacca ccagaggtcg aaaggctggt ggagtattgc      4500
     aggaaagaga agatgccggt gctcatcgga tgcgatgcca gtgcgcacca tacgatatgg      4560
     ggcagcagtg acatacattt aaggggtgag tgcctaactg attttatttt taaatataat      4620
     ctagaactag aaaatgtcgg atctgctccg tcatttgtta ctaggatcag ggaagaggtg      4680
     ctggacatca ccctaatcag tcggtcccta aagcctcacc ttagggaatg gcatgtttcc      4740
     caagaggaat ccatgtctga ccataggact atcctattta atttaaaatt aaatacggat      4800
     agtagcacac caggtcgcaa ccccaggaga accaactggg aaggctataa gtcgacctta      4860
     gggctcaacc tagccaacgg actatctggt acacccagga atccgataga gctggacaga      4920
     gccacggatg acctcaataa gtgcataatt agtgcatttg aggagaattg cccggtaggg      4980
     aaaagattca tggaaaaaga tgccccatgg tggaacgaca gtctggaaag gctgcgcgtc      5040
     accacacgtc gcctcttcaa taaagccaag agagacggaa tatgggaaca ataccgcgaa      5100
     tgccttacct cctataataa ggagataaga aaggctaagc ggaagaatta cagagacttc      5160
     tgtgaaagca tagttagcac aagcgaaggc gccaggctcc acagagcact ggcgaaacga      5220
     acgcctgatg ctaaccttgc actgaagcgt ggggataatt ccttcacgat tagcaataag      5280
     caaagattag aattactctt cgagacgcac ttcccaggct gcacacccct gcaggaagag      5340
     gctatcgtag gaataagcag atatagaccg tccactgacg actgggcatg cgccaagtcg      5400
     acagtcacaa aggagaaact aaattgggca attggcacat tccagcccta taaatctccc      5460
     ggaatggacg gcatatcgcc agccttcctt caaacgggcc aggatatact cctctcccgt      5520
     attaggaaag ctctagtaag tagcctagcc ctcggacaca taccgagcgc atgcaggaga      5580
     gcaagggtag tcttcatccc gaaagcaggg aagaaagata ttaccgaccc gaagtccttc      5640
     agacccatca gcttgacatc gtttttattg aaaacgttgg aaaagatggt ggactacaag      5700
     attagaagca ctttgctcaa gcaaaggccg ctgcacccag cgcagcatgc atatagagta      5760
     ggcaggtcta cggacacagc actttatcag ctgcaacgca ccttgagtgc ggcaattgat      5820
     tataaggaag tagctttgtg cgccttccta gacatagagg gtgcctttga caatacatca      5880
     cacgatgcga tcaaggacac cctctcgaga aggggcctgg atcctaccac cagcagatgg      5940
     attctcgcac tgctgcgatc caggcaggtc acagcatcag tgcatgatag caccgtaacg      6000
     gtcctaacca ccaagggctg tccccaaggg ggggttctgt ctccgctact ctggagtctg      6060
     ttggtagacg aactactaaa cagactcact aacagtggta tacaatgtca aggttatgcc      6120
     gatgacattg ttatcatggc gcgaggaaaa tttgaagaat cactctgtga catggtccag      6180
     tctgggctaa ggataacgta tgactggtgt aaggaggtcg gactcaacct taaccctacg      6240
     aaaacagtca tcgtcccctt taccagacga cataaactac agaggatgag gcaaatatgg      6300
     ctctcaggta ccccactaga aagaagtagg gaggttaaat acctgggcgt catatttgac      6360
     agtaaactta actttggcac ccatgtgcag aatgccatgt taaagtgctc cagagcgctt      6420
     tacacatgtc gcagcatagc cggcaaatca tggggcacat caccaaagat agtaagatgg      6480
     ctatacctaa tggtagtaag acccatgcta acctatgggg taatagcatg gggtgacaga      6540
     gcacggttga tcaccgtgaa aaagcaactg caaaaattgc aaagaatggc ctgtgtctgt      6600
     atgacaggag taatgtgcac ctgcccaaca atggcccttg aagccttaat ggagctcacg      6660
     ccactccacc acatcataag gctcaagcag aaagcgacgc ttttaaggat gtcagcagaa      6720
     ggagttggat gcccaactct ctcaaatgaa ctgcccctgc tattgcaacc cagggacgaa      6780
     atgaaagtcg aatacatctt cgaacgtaat ttcacagttt acatgagcag taaaaggaac      6840
     tggacaactc tggaagaggt ccaccctatg aagccgcaca ccataaggtg gtacacagcg      6900
     gatcactcac caaccagggc acaggtctcg gtgtggtggg ccctcgggtg tcataccacg      6960
     aatccctacg gaacgcacac aagcatattc caggctgagg tatgtgcgtt aggaaaatgt      7020
     gcgattttaa ccttaaaacg taactatcgg aatacagaca catccatact atccgatagt      7080
     caagcagcat taaatgcaat aacggggact aaaataacat caaagatagt ccaggaggct      7140
     cgttcaaagc taaacctact tgggactcac aacaggcttg cctgcgatgg gtcccgggcc      7200
     acagggatat accgggtaac gaggcggctg ataagcaggc gagaatgggg gcagaaaggc      7260
     cccctgatag gaccagaacc gtattgtggc ataggcagac acactatacg gctggtactt      7320
     agaaatgaag agaaacaggt gcggcagcag agctggtcgg aggcagtagg tctcaggcaa      7380
     gccagatgtc tcctcggtgg ttataatctc aagcgattta agcaagttat aaccatggga      7440
     aagaacaacc ttaggatcct caccggtcta atgacggggc actgtcgact aagaagtcac      7500
     ctaactagac taggtatata tagtagcgat ctctgcaggt tctgtgaaat agaggaggaa      7560
     tcctcggtac acatcctagc agaatgtgtc gcactagcta gaaggagatg cagcatcctg      7620
     gggatgcatg tcttgaattt tagagacata gaagacctca acccaacaaa gatcctcaca      7680
     ttcgttcggg aagtggggct gatggaagag ctataggctc agaagggggc acaatagatc      7740
     taaaaggtcg cggtgcaact tccccaataa taataataa                             7779
//
ID   LOA-10_AAe  repbase;    DNA;    INV; 6327 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6327
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1420-1420 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           982..2553
FT                 /product="LOA-10_AAe_1p"
FT                 /translation="MEIDRESDIVESNSLEEIESCSSSILDTPNREDMYVD
FT                 DDDYDDGINVTILSSSATLEFNKKAVENSMVEKKLNASATSNSNGITENNS
FT                 GNKTPFTGANPKDKKHKRLNGAAKKRFKYLVDHGHSRDEARLLAEKPFRVL
FT                 ESDPHKRRRNADLSESNSSETNPPKRLARQLDRGQTLQVRSSVQNRLEQAR
FT                 KGEGSSVRKEAAGNSGPHKPLYSEVANYIRIGILPEGFPNIELSTQQLTAT
FT                 QNEILKKVAEQRKEPIKPKFGSRVFRPGHMIVTCKNQDTANWLKETISQIQ
FT                 PWENACLIAVDEKDIPRPEILVGFFPLSEQDSNEEIFALVESQNEGLLVDS
FT                 WRVLKRYTVKQHHVELMFTVDNVSMKSLESNKFIIDYKFGVAYIRHRNTNT
FT                 ESTEGSHNEITRGEKTASDSVGYTREDPQFSGAVEDAQMADPTQKDEADGL
FT                 ELEKTIIMENGCEGSSKTHKDKSDKNLNRSINPLPGSSKGGNNSLPYRQIR
FT                 GQILPDRPKQSTKAEQSACKTLETNKHE"
FT   CDS           2558..6208
FT                 /product="LOA-10_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTQRSIKFIQENLHHAKAASAILSRTFTKDKIDVALL
FT                 QEPWTKNHKILGINILGCKLIYDNTQLVPRAAILVNCNAKFTPITEFIGKD
FT                 IAAISLEVPTAKGNTLIYVASAYFPGDVEEVPPPEVAAFVSHCRRQNKGFI
FT                 IGCDANAHHTIWSSTDINSRGESLFSFISQNDIDICNRGNAPTFINAVREE
FT                 VLDLTLCNSTISGSIEKWRVSDEISLSDHRQILFEFATKDIVRETFRNPRK
FT                 TNWELYDSRLRLQNESTSNIINTSVELEKAADCLTTSIMVAYNESCPIKVR
FT                 STSRDVPWWNDRLDKLRRNARKLFNRAKRTSNWSQYREALTNYNIEIRRSK
FT                 RKNWRHMCESIDSTPETARLQKVLSKDHTNGLGTLKKNDGSFTENTQETLE
FT                 LMMETHFPGSLPCSSDQTSTFSLSNGSDMSNEEASDLADHIFTYSKIEWAL
FT                 DTFDPFKTPGLDGIFPIHLQKCKEKIIPTLLTLFKCSFLLRYIPTKWRQVR
FT                 VVFIPKVNKKDKTLPKSFRPISLTSTFLKLMEKLIDEYIKSDIIKHKPLNR
FT                 AQFAYQTGKSTTTALHSLVTKIEKTFDYKELLLAAFLDVEGAFDNASFTSM
FT                 RRAMRSRGFSKSIIDWIEEMLSKREISAYLGDSVVRVRAVQGCPQGGVISP
FT                 LLWSLVVDDLLIKLQHQGFEVIGFADDIIIIVRGKYDAIVSDRMQSALSYT
FT                 LRWCQNEGLNVNPNKTTIVPFTKRRKISISSLKLGDVRLSLSSEVKFLGVI
FT                 LDSKLSFNRHVEQQIEKARNAFWGCKRTFGRKWGLKPRMILWIYTAIVRPT
FT                 ITYASVIWWEKTKQISTQSKLNKLQRLATAALTGAMRSTPSKALDAMLNLP
FT                 PLQDFIQMDAVKNASRLRRSSTINDSDLKGHMSIVKTLNINPIFSISEDCM
FT                 MKRNFFDHLFCVPDITRQDWEVGQPNFRSGSTIFFTDGSKQDNLVGAGISG
FT                 PGVNVSLPLGCWPTVFQAEIFAILECADICLKRRYKNANICICSDSKAALN
FT                 ALKSNVYTSKLVWECTMLLQQLSCRNKVNLYWVPGHCGIEGNEKADQLAKI
FT                 GSSTQFIGPEPYFGIAPCGFKLELKNLERTKIKLTWTNTSDSRQAKRFIEP
FT                 DARKTLRLINLNKHELSTYTGLITGHCPSKYHLKIIGKLQEDKCRFCKLES
FT                 ESSEHLMCECVALYRKRCRYLEKGLLEPWEIWNSHPKQVLSFIRNAVPDWD
FT                 TRQLMGG"
XX
SQ   Sequence 6327 BP; 2104 A; 1210 C; 1259 G; 1754 T; 0 other;
     atttggcaac cctgctgagc tctgctagaa tcttaaaccg cccccgtatt tactgactgt        60
     tttctaagtg taaaccgcct tataaatcgc gagtgacctt ttaacagttt gtttaatcgg       120
     tgaagtgaga agattgattg cggaaaggta agggagtgca tcttttagcg tttaattaag       180
     agatcattag tgctggaaaa agtaccccgt tatatttcta tagtggcaca aacaaaagcc       240
     acaaaacgag cgagagaggc tgaaattgaa tcaggccttg catgcaagtt tccactgtta       300
     ccaatggtgt gtgtgttttc aacatattga tttgtatggc ataaataggt gaggtgatgc       360
     tgctaatttg tgcctcttaa tacttttaat agtgaatgaa gagctttctg tgctcacaaa       420
     ctgctattta aaaaacaaaa ataattagaa gtagtgtagt gtaatagtaa atattaccgt       480
     aatttctctt tgaacacatt accggacaat ccataatatt caagtgctac ggaatacaaa       540
     atgcctaata ccaatgcctg tttttgcata gtaagggtaa ctggtatgca gttttgattt       600
     ttttttctct ctcttttttt tcaagttaat ccaatccttt tttttctctt tgcataaaag       660
     ctgtttatct acctgcctaa tttaaattaa atgtttttgc tacttccttt tatatcaatt       720
     tctaacaaac tgatattttc atatgttttt ttttgtctct tatctccatt ataaaactaa       780
     gctggcataa taaattaccc aaaattacgt acttttttcg tctctgctga ttttctccga       840
     ttcttctttt tttttttttt tcgctcacct tccccatatt ttatgtatac ctaatgcagc       900
     aatcatgtgc gatctgttcg aatttcacag caactgaaag tagattcccc tcattgttac       960
     agaatccaac tacgtattaa aatggagatt gatagagaaa gcgatatcgt cgaaagcaac      1020
     tctttagagg aaatagaatc gtgttcctca tctattctcg ataccccaaa tcgggaagat      1080
     atgtatgtcg atgatgatga ctatgatgac ggtataaatg tcactatttt atcgtcgtct      1140
     gcaactctcg aattcaacaa gaaagctgtt gagaatagca tggtggagaa gaagctaaat      1200
     gcttctgcca catctaactc aaacggcatt acagaaaata atagtggcaa taaaacgcca      1260
     ttcactggtg caaaccccaa agataagaag cataagcgtc ttaacggagc tgctaagaag      1320
     aggtttaagt accttgttga ccatgggcac agtcgagacg aagcacgtct tttggcggaa      1380
     aaacctttcc gagttctgga atctgatcca cataagcgtc gcagaaatgc cgacctaagc      1440
     gaatctaatt ctagcgaaac caatccacct aaaaggcttg cccgtcagct tgatagagga      1500
     caaactttac aagttaggtc ctcagttcaa aacagactgg aacaagctag gaagggggaa      1560
     gggtcgtctg tacgcaaaga ggctgctgga aacagtgggc ctcataaacc attatactcg      1620
     gaagtagcga actatataag gattggcatt cttcccgaag gcttccctaa tatagaactt      1680
     tctacccaac aacttactgc gacgcaaaat gaaattctta aaaaagttgc tgaacaaaga      1740
     aaggaaccaa tcaagcctaa gttcggcagc cgcgtgttta ggccagggca tatgattgtc      1800
     acctgcaaaa accaagatac tgctaactgg ttaaaggaaa caatttccca aattcaacct      1860
     tgggagaacg catgcctaat tgcagtggat gaaaaggaca tacccaggcc tgaaattttg      1920
     gtgggatttt ttccactaag tgaacaagac tcaaatgaag aaatctttgc tctagtggaa      1980
     agtcagaatg aaggcttgct agttgattct tggagggtcc tcaagagata cacggtaaag      2040
     caacatcacg tggaacttat gttcaccgtt gataacgttt ccatgaagtc tctagaatcc      2100
     aacaagttca taatcgacta caaatttgga gtagcctata taaggcaccg aaacactaat      2160
     acggagagta ctgaaggtag tcataacgaa ataacgagag gtgaaaaaac ggcttcagac      2220
     agtgtaggat ataccagaga agatcctcaa ttcagcggag ctgtagagga tgcacaaatg      2280
     gccgatccta ctcaaaaaga tgaagctgat ggacttgaac tcgaaaaaac aattatcatg      2340
     gaaaatggtt gtgaaggctc ttcaaaaacc cataaagata agagcgacaa aaacctaaac      2400
     agatccatta atcctctacc gggttccagc aagggtggaa acaactctct gccataccgg      2460
     caaatacgag ggcaaatact acccgacaga ccaaaacagt caacaaaggc tgaacaatct      2520
     gcctgcaaaa cattagaaac aaataaacac gaataaaatg acgcagagaa gcataaaatt      2580
     cattcaagag aaccttcacc atgcaaaggc agcttcagca atcttatcta gaacttttac      2640
     aaaggacaaa atagacgtgg cgcttttaca agagccatgg acgaaaaacc acaaaatttt      2700
     aggaatcaat atattaggat gtaagttaat ctatgataat actcagctcg tcccgagagc      2760
     tgcaattcta gttaactgca atgctaaatt tacaccaatt acagaattta tcggaaagga      2820
     cattgctgca atttctttag aggtgccaac cgcgaaagga aatacgctaa tatacgttgc      2880
     gtccgcctat tttcctggcg atgttgaaga agtacctcct ccagaagttg cagctttcgt      2940
     gtcccactgc aggagacaaa acaaagggtt catcatcgga tgtgacgcta acgcccacca      3000
     cactatctgg agcagcaccg atatcaacag tagaggtgag tctcttttca gttttatatc      3060
     tcaaaatgat attgacattt gtaatagggg taacgcccct acttttatta atgctgtgag      3120
     ggaagaagtg ttagacttaa ctctctgcaa ttcaacaata tcgggtagca ttgaaaaatg      3180
     gcgggtatct gatgaaatat cgctatcaga tcataggcaa attttattcg aatttgctac      3240
     caaagatata gtaagggaaa cgtttagaaa tccccgaaaa accaattggg aactttatga      3300
     ttctcggtta cgattacaaa atgagtcaac ttctaacatc attaatacat ccgttgaact      3360
     tgaaaaggca gctgactgcc ttactacttc tattatggtg gcttataatg aaagctgtcc      3420
     aataaaggta cgctctacta gtagagatgt tccttggtgg aatgatagat tagataaact      3480
     aagaagaaat gctcgtaaac tattcaatcg ggcaaaacgt acatcgaact ggtctcagta      3540
     tagagaggcc ttaaccaatt acaacataga gataagaaga tcaaagcgga aaaattggag      3600
     acacatgtgt gaaagcatag atagtactcc tgagactgca agacttcaaa aggttctttc      3660
     taaagaccat accaacggtc tcggaacact taaaaagaac gacgggtctt ttactgaaaa      3720
     tacacaagaa actctagaat taatgatgga aactcatttt ccagggtcac taccatgttc      3780
     atctgatcaa actagcacat ttagcttatc aaatggatcg gatatgtcca atgaagaagc      3840
     ttcagatcta gcggatcata tatttacata ttctaagata gaatgggcat tggacacttt      3900
     tgatccattt aaaaccccag gattagatgg aatttttcca atacacttgc agaagtgcaa      3960
     ggaaaaaatt attcctaccc tgctgaccct attcaagtgc agctttctat taaggtatat      4020
     tccaaccaaa tggagacaag tccgagtggt gtttataccc aaagtaaata aaaaggataa      4080
     aacattgccg aaatcattta ggccaataag tcttacgtcc acatttttaa aattaatgga      4140
     gaaattaatt gatgagtata ttaaatcaga tataattaag cataaaccgt taaatagagc      4200
     tcaatttgcc tatcagactg gcaaatccac gacaacggct ctccattcct tagttacaaa      4260
     aatagagaaa acttttgatt acaaagaact acttttggca gctttccttg atgttgaagg      4320
     tgcgtttgac aacgctagct tcacatcgat gagaagagcc atgagaagtc ggggtttttc      4380
     aaaaagtatt attgattgga tagaagagat gctgtcaaaa agagagatat cagcatatct      4440
     tggtgattca gttgtaaggg taagagctgt tcaaggctgt ccccaaggcg gagttatctc      4500
     tcccctcctc tggtccctag ttgttgatga tcttcttata aaactgcagc atcaagggtt      4560
     tgaagtaatt ggattcgcgg atgatatcat cattattgtt cgtggaaaat atgatgcaat      4620
     cgtttctgat cgaatgcaat ctgcgttgag ctacacttta aggtggtgcc aaaatgaagg      4680
     gttaaacgtt aaccctaaca aaaccacaat tgtaccgttt actaaaagac gcaaaatctc      4740
     catatcgagt ctaaaactag gagatgttag actgtctctg tcttcagaag taaaatttct      4800
     tggagttatc ttagatagta agctcagttt taacagacat gttgaacaac agatagaaaa      4860
     agcaagaaat gctttctggg gctgcaaaag aacttttggt agaaaatggg gactaaaacc      4920
     aaggatgata ctttggattt atacagccat tgtgagaccg actattacat atgcatctgt      4980
     tatttggtgg gaaaaaacca aacaaatctc aactcaatcc aaattgaaca agctgcaaag      5040
     attggctaca gctgcattaa ctggggcgat gcgtagcact ccttctaaag ctttggacgc      5100
     aatgttgaat ctacctcctt tgcaagattt tatacaaatg gatgctgtta aaaatgcttc      5160
     acgactcaga aggtcctcta ctattaatga tagcgatctc aaaggacata tgagcatcgt      5220
     aaaaacatta aatataaatc caatattttc aataagcgaa gattgcatga tgaagcgaaa      5280
     ctttttcgat catctctttt gtgttcctga tataactcgt caggactggg aagtgggaca      5340
     accgaacttc cgttctggct caacaatctt ttttacagat ggctcgaagc aagataacct      5400
     tgttggtgcg ggaatatctg gcccgggagt aaacgtttca ctaccactag gttgttggcc      5460
     aacagttttt caggcggaaa tttttgccat cttagaatgt gccgacatct gtctaaaaag      5520
     gcgctataaa aatgctaata tctgtatttg ttcggacagt aaggcagctc tcaatgcttt      5580
     aaagtcgaac gtttatacat ctaaactggt ctgggaatgc accatgctac tgcagcagtt      5640
     gtcctgtcgc aataaggtca atctttattg ggttcctggt cattgcggaa tagaagggaa      5700
     cgagaaagct gatcagctag ctaaaatagg gtcatccact caatttattg gacctgagcc      5760
     ttattttgga atagctccat gtggttttaa actagaatta aagaatttag aaaggacaaa      5820
     gataaaactt acctggacca atacatccga ttcccgtcag gcgaaacgat tcatagaacc      5880
     ggacgccaga aaaacactaa ggttaataaa cttgaataaa catgagttaa gtacttatac      5940
     tggactaatc acaggtcact gtcctagtaa ataccactta aaaataattg gaaagttgca      6000
     ggaggataag tgtcgcttct gcaagttgga gagtgagagc tctgaacatt taatgtgcga      6060
     gtgtgttgca ctttaccgta agcgttgtag atatcttgaa aaaggcttat tagagccttg      6120
     ggaaatctgg aactctcatc ccaaacaggt actaagtttc atacgaaatg cagtacctga      6180
     ttgggataca cgccaactga tgggtggata gtcacttctt atagtgatga gtcctctcat      6240
     cgcggcaaaa acaaagagga tgacaccaca aaagatcaaa taaatggtcg cagtggtaat      6300
     atgtccccga cactggaaaa aaaaaaa                                          6327
//
ID   LOA-1B_DPer repbase;    DNA;    INV; 5500 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila persimilis.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1B_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5500
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1662-1662 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. ~83% identical to LOA-1_DPer.
XX
FH   Key           Location/Qualifiers
FT   CDS           483..1826
FT                 /product="LOA-1B_DPer_1p"
FT                 /translation="MYNNKNKTNKKTNECGAPQMPTGSNPKLGKAAAQRPG
FT                 PTGSIVGNTHKVEGACANPRGSHPESGVGGKVTPEADTLEGKLSNIAAARP
FT                 SGKAEGVDLPSTSAQARRYSYAEKRSAGHILRRQHASSEASPSAEWLKKVE
FT                 WASAVLPEFTLEQKKVAPQAKRQRSQETPGPVAKRSRVLPNVSFAQIAKER
FT                 TLIGVLDKGSAEGRIPRSQWKWVEAALADRCFELLDKDPGPPPVCKDMGWF
FT                 QGNVKIIACEDERSVKLYKAAVAQVGEVYAGAKLVAVDWSEVPSRPRARIW
FT                 VPATFKEPERILKMLQRCNPGLPTSDWKVAKVETTQGPTNQAVLVLNKESL
FT                 APIEAAKGELNFGFSSVTIKVYKSDAAAAALPVVNPDVQDVVAEIEAPDDE
FT                 LEPDQEGFSSETELMLDFESMCRERVSDDSDADITVVENLEDGPKDPSNKS
FT                 PPL"
FT   CDS           1747..5376
FT                 /product="LOA-1B_DPer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MTRTRTSRWWRILKMVLRILQINLHHCKAASAALILR
FT                 LDASGADVVLIQEPWVVGGKVCGLGTREYKIIVSQNEGKIRTCILARKHLN
FT                 IFLLHNYSDGDNTAASLELRGHHLRLVASYMAHEEDDPPNDLVRKIASDSE
FT                 RTDKDLLIGCDANAHHTQWGSTDTNVRGESLFSFILNSNLFICNRGNDPTF
FT                 IIKNRQEVIDLTLVSSKLLDTIKSWRVLGDHSFSDHRYIETILSFDIPKPT
FT                 DYINPRKANWEKYSTTLEELLPPNAPNCPNTEDNLNRLVYRFTDACNKAFK
FT                 AACPSTRPRGKKKPPWWSKQLDTLRRTCRTLFNRATRTKEDTHWADYKTSL
FT                 ALYKKETRKAKRASWQKFCSEIEETSEAARLRKVLSKTTPSVGYLKKNDGT
FT                 WTNSSEESLHILLDTHFPGCTSTEPSHLPREGSVESMDHILTKRNISWAVN
FT                 SFNPFKSPGPDQVIPAQLQRAGETAINWLHSIFRKILAVCTIPQAWLKARI
FT                 VFIPKAGKASHSTPKDFRPISLSSFLLKTFERLIGLQLRTTISPQLYSSAQ
FT                 HAYRKGKSTETALHEVISSVEKSLHLKEYSLIAFLDIEGAFNNVTPGAITE
FT                 ALTDLGVDRHLVMLIDQLLIRRTVTSSMGSSTQSRYVNRGTPQGGVLSPLL
FT                 WNIAVNKILCDLEEGGCKVVAYADDVAIIFAGKYPQTLCDLMTAKLARLSQ
FT                 WTESRGLGLNPSKTELVLFTKKYKVPPLNPPTLNGYRLSFSDSASYLGLVI
FT                 DKKLSWNLNVKDRVRKATTALYTCKKAIGLKWGMNPSIVRWIYLAIVRPII
FT                 LYGVTVWWPALAKRTITNQLGKVQRTAALCISGALRTTPNDALNAMLCLQS
FT                 LDFAGKERAEMAAIRLRDSEQWVPQNIGHSSILNKNNKVPARTDYQVPMEH
FT                 TETPFSIIIPHRDDWLEGPPGPDGAISIFTDGSKLDGRVGGGIYSEQLNIR
FT                 QSFRLPDHCSVFQAEVTAIREALYCLHTVTTTATNLNIYSDSQAAIRSLNA
FT                 ISSNSATVAKCRRSLHEMAQQFAISLIWVPGHRDIEGNCIADELARSGTTT
FT                 PLLQDKEDICMPMATCKLIIKEQYTLLIDNKWQTGPRCRTARQTWPTIDKK
FT                 RTSELCKLGRERCSAVIRSLTGHWLVGTHANRLGAPYNDFCRSCRDEDEEE
FT                 TVEHLFCSCPALSRRRLHHLGSAFLNDISEMSTLCPRKIVNFIRASGWDNC
FT                 "
XX
SQ   Sequence 5500 BP; 1547 A; 1479 C; 1422 G; 1052 T; 0 other;
     ctatctggtc tgatgagctt gtgaggtagc tcaaaggggg cctagctgag gccaccggac        60
     gggtcgcggg ttgcggatag cgaacggcct acctcggtag gtcagctgcg aataagcggg       120
     catccctcac gggagagtac cgaaataagc agtcccggac agccagcggg tgttcgcgaa       180
     gcagcaacac tgacgatgcg cttgtggtgc cgcctcaata agtagctcac acactcccat       240
     ccatacacaa tacctaccca catcccaacc cccacatcca cctcacaccg ggccggacta       300
     agtgtgttac tcgacccgtg ccgagagtca gcctggctgg gggcccggta taaaaaatag       360
     cccagtctct aacggagggc tcagggactt ggcagccccc tgttctaatg atgccttacc       420
     cgggcaacgt ggatctctgc ccgggctgac ctttcccttt ctctgcatct cgtgggaaca       480
     agatgtataa caataaaaac aaaaccaaca aaaaaacaaa tgagtgcggc gctccccaaa       540
     tgccaactgg gagcaatccc aagctcggga aggcagcggc ccaaaggcct ggcccaaccg       600
     gctctatagt ggggaatacc cacaaggtgg aaggtgcctg tgcgaacccg agggggtccc       660
     atcccgaatc cggtgtgggt ggcaaggtaa ctcccgaagc tgacaccttg gaagggaagc       720
     taagcaatat tgcggctgcc cgaccttctg gtaaagcgga gggggttgac ttgccgtcga       780
     caagtgccca agccagacga tactcatatg ccgaaaagag gagtgcaggg cacatactcc       840
     gtcggcaaca cgccagcagt gaagccagcc catcagccga atggctgaag aaggtggaat       900
     gggcttcggc cgtacttccg gagttcacct tagaacagaa aaaggtggct ccccaagcca       960
     agaggcagcg ctcgcaggag acaccgggac cggtagcaaa gcgctccaga gtgctgccaa      1020
     atgtctcctt tgcgcagatt gccaaggaga ggacgctaat tggtgtcctc gacaaaggca      1080
     gcgcagaggg gagaatccca aggagtcagt ggaagtgggt ggaagcggca ttggccgacc      1140
     gctgcttcga actcctcgac aaagaccctg gacctccgcc agtctgcaag gacatggggt      1200
     ggttccaggg caatgtaaag ataattgcct gcgaagacga gcgctctgtg aagctgtaca      1260
     aagcggcggt agcgcaggtc ggcgaggttt atgctggggc gaaactcgtc gcagtcgact      1320
     ggagcgaggt gcccagcaga ccgagggcca gaatttgggt gccggctacc tttaaggagc      1380
     cagaacgcat cctcaagatg ttgcagaggt gcaacccagg actaccaacc tccgattgga      1440
     aggtagccaa agttgagacg acacaagggc cgactaacca ggcagttctc gttctcaata      1500
     aagagtcgct ggccccgata gaggcagcaa aaggagagct aaacttcggc ttcagctcgg      1560
     tcaccatcaa ggtgtacaaa tcggacgcgg cggccgcggc gcttcctgtc gtcaacccag      1620
     acgtgcagga tgtcgttgcg gagatcgaag cgcctgacga cgagctggag ccagaccagg      1680
     aaggcttctc ctcagagaca gaactgatgc tcgacttcga gtcaatgtgc cgagagagag      1740
     tctcagatga ctcggacgcg gacatcacgg tggtggagaa tcttgaagat ggtcctaagg      1800
     atccttcaaa taaatctcca ccactgtaaa gcagcatcgg ctgctctcat actccgccta      1860
     gacgcaagcg gagccgacgt agtcctgatc caggagcctt gggtggtagg aggcaaggtc      1920
     tgtggattgg ggacgaggga atacaagatc attgtatccc aaaatgaagg taaaatccgt      1980
     acctgcatac ttgctagaaa gcacctaaat atctttctgc tccacaatta tagcgatgga      2040
     gataacacgg cggcaagcct agaactaaga ggtcatcatc tcaggctggt ggcatcctat      2100
     atggcccacg aggaggatga tcctccgaac gaccttgttc gcaaaatagc cagcgacagc      2160
     gaaaggacgg acaaagacct acttataggt tgcgatgcca acgcccacca cacccaatgg      2220
     gggagtacgg acacgaatgt aaggggtgag tcactgttca gcttcatcct gaactcaaat      2280
     ttattcatat gcaatcgggg taatgacccc acatttataa ttaaaaatcg gcaggaggtc      2340
     attgacctca cgctagtgtc aagcaaactg ctggacacaa tcaagagctg gagagtccta      2400
     ggagaccact ccttctcgga ccacaggtat atcgagacga tattatcctt cgatattccc      2460
     aaaccaaccg actatatcaa ccccagaaaa gccaactggg aaaaatatag cacaacgctg      2520
     gaggagctac tccctcctaa cgcccctaac tgcccgaaca ctgaagacaa cctaaaccgt      2580
     cttgtgtaca ggtttacgga tgcgtgcaac aaagccttca aggcagcatg tccttctacc      2640
     agaccaaggg gaaaaaagaa acccccctgg tggtccaagc aactagacac ccttcgtaga      2700
     acttgcagga ctctattcaa cagagccaca agaactaagg aggatactca ctgggcagac      2760
     tataaaacca gtctagcact atacaaaaag gaaacgagga aggctaaaag agcctcctgg      2820
     caaaaatttt gctccgaaat cgaggaaacc tcggaggccg caagactccg gaaagttctc      2880
     tcaaaaacca ccccctcggt agggtacctc aaaaagaatg atggcacgtg gaccaactct      2940
     agtgaggagt ccctgcacat tttgctcgac acgcacttcc ccggatgcac atccaccgag      3000
     ccgtcacacc tcccaagaga gggatcggta gaatcgatgg accatatcct tacaaaacgg      3060
     aacataagtt gggcagtaaa cagcttcaac ccgtttaaat cgccaggccc ggaccaggta      3120
     atcccggccc agcttcagag ggccggggag acggccatca actggctaca tagtatcttc      3180
     aggaagatac tggcggtatg tacaataccg caagcgtggc ttaaggctag gatagttttc      3240
     atccctaaag caggcaaagc ctcacactca accccaaaag actttagacc aatcagttta      3300
     tcgtctttcc tactcaaaac ctttgagaga cttatcgggt tacaattacg gactaccata      3360
     agtccccagc tgtactcaag tgcgcagcat gcctaccgga aaggaaaatc cacggaaacg      3420
     gcacttcacg aagtgatctc gagtgtagaa aaatccctgc atctcaaaga atactcacta      3480
     atagcttttc tcgatatcga gggagccttc aacaacgtca caccgggcgc cattacagaa      3540
     gccctgactg acctgggggt ggaccgtcac ttggtgatgc tcattgatca attgctcata      3600
     cgcaggacgg tgacatcatc gatgggatcg tccacccagt caaggtatgt caacagagga      3660
     accccgcaag ggggagttct gtctcctctt ctatggaaca ttgcagtcaa taagattctt      3720
     tgcgacctgg aagagggggg ctgtaaagta gtggcatacg cggatgacgt tgcaattatc      3780
     tttgcgggga aataccccca aacactatgc gacctaatga ccgcaaagct tgctcgattg      3840
     tcccaatgga cagaatcgcg cggattggga ctaaatccct cgaaaacgga actcgtgtta      3900
     ttcacaaaaa aatacaaggt cccgcccctc aaccccccaa cactaaacgg atacaggctc      3960
     tccttcagcg acagtgccag ttacttaggg ttggtaattg acaaaaagct tagctggaac      4020
     ctgaatgtca aggatagagt gaggaaggca acgacagcac tctatacttg caaaaaagct      4080
     atcggcctaa agtggggcat gaacccaagc atagtccgat ggatatatct ggcaatagtc      4140
     agacctataa tactctacgg agttactgtc tggtggcctg ccctagcgaa aaggacaata      4200
     accaatcagc tgggcaaggt tcagcgaaca gccgccctct gcatcagtgg agctcttcga      4260
     actacaccaa atgatgcgct aaacgccatg ttatgccttc agagccttga ctttgcagga      4320
     aaggagcggg cagaaatggc agcaatacgt cttagggact ctgaacaatg ggtaccccag      4380
     aacataggtc actcatctat actaaacaaa aacaacaagg tcccagcaag aacggactat      4440
     caagttccaa tggagcacac ggagactcca ttcagcataa tcatccctca tagagacgat      4500
     tggctcgagg gaccccccgg cccagacggg gccataagca tcttcacgga tggctcaaaa      4560
     ctggacggca gggttggagg aggaatctac tctgaacaac ttaacataag gcaatctttc      4620
     aggcttccgg atcactgtag cgtcttccaa gcggaagtta cagcaatcag ggaggctctg      4680
     tactgccttc atacggttac caccacggca accaatctaa acatctacag cgacagccaa      4740
     gctgcgatca gatcacttaa cgcgatctcc tcgaactcgg ctactgtggc gaagtgccgc      4800
     agatctcttc acgagatggc tcagcaattt gctatcagcc ttatatgggt cccgggtcac      4860
     cgggatatcg agggcaactg catagcggac gagctggcca gatctggcac tacaaccccc      4920
     cttctccaag ataaggagga tatttgtatg cctatggcca cctgcaagct catcataaaa      4980
     gagcagtaca cgctactgat agacaacaag tggcaaacag ggccacgttg tcgcacagct      5040
     cggcaaacat ggccgaccat agataagaag cgcacctcag agctctgcaa actaggcagg      5100
     gaaaggtgca gcgcagtcat acgttccctc acaggacact ggctagtagg cacccacgca      5160
     aacaggctgg gtgccccata caatgatttc tgccgcagct gcagagacga ggacgaggag      5220
     gaaacagtgg aacacctgtt ctgttcctgt ccagctctca gcagaaggag gctgcatcac      5280
     ttgggctctg cctttctgaa cgacatctcg gagatgtcca cgctatgtcc cagaaagatc      5340
     gtcaacttta taagggcatc tggatgggac aactgttgac atgaagtctc atctgcaggg      5400
     agggaatgat cccaagcggt atcacaacgg gccgaaaccg gcctatgtgt gctgggctcc      5460
     gagcgagctt ggcggccgtc tctacctaac ctaacctaac                            5500
//
ID   Loa-1B_DT   repbase;    DNA;    INV; 5455 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DT;
KW   Loa-1B_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5455
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1711-1711 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. ~83% identical to Loa-1_DT.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           413..1483
FT                 /product="Loa-1B_DT_1p"
FT                 /translation="MATPCSNYRLTRASRISARADLSPSPQLVGSIMDKTI
FT                 NKIKQETGTLKKPTEMPSAGSNTHTSTVQKGPHPKLGMTGGRKPAADTSAT
FT                 DAIALTATVGTAKAIGPTTGAVKHLRRKXDCRQTLRSHARSNIATPSPEWL
FT                 KKVEWAKLVLPNYGQDKPTQEGAQTKRQRSLELPGPSAKRSKVQPSVSFAE
FT                 ITKDRVLLGLIDKGNPEGRIPRNKWKAVESHLSIICLRMIRENPCSPPCCM
FT                 DAGWYQGSVKVVACDSQRSADLYKQAASKLGAVYEGANIVALDWCDVPSRP
FT                 RARIWLPAAMKAPEDILYMLQVCNPHLPTKDWRVVKVEEHEGDVNQAVMVL
FT                 NKESVAPIEAARGS"
FT   CDS           join(1732..4647,4651..5058)
FT                 /product="Loa-1B_DT_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLRLLQINLHHSKAASAALSLRLAKGEADVVLVQEP
FT                 WVVGGKVAGLGTREYKLMLDPKEGKIRTCILAKRHLNIFLLRNYSNGDNTS
FT                 VSLELQHGSIRLLSAYMAFEKEDPPDALVRGLAKECEELKTGLVIGCDANA
FT                 HHTQWGCPNNNDRGESLFDFILNSNLFLCNRGNVPTFITKACQTIIDLTLV
FT                 SDLLVSAVTNWFVSDEHSFSDHRYIEIILSLDSPMPVGFANPRRADWHMYK
FT                 EVLTNILPMVPPESIIGPQGLDTTVDIFTEACNSAFKVACPIGRPRGKKKP
FT                 TWWTQQLSILRSNCRCLFNRAKAGNEDANWQRYKLELALYKKAIRRAKRTA
FT                 WQTFCSDIEKTTDAARLRKILSKTAAPLGYLQKANGSWSDSSDESLDLLLD
FT                 AHFPGSQHVGQPPERIXGEGINLDLLISDRNIKWAIQSFKPYKSPGPDGIT
FT                 PAHIQQAGQLAINWLSKIFHTILAVGELPTAWRETKVVFIPKAGKATHTTA
FT                 KDFRPISLTSFLLKSFERLISLHLRATIDPTQMSEAQHAYTKGKSTESALH
FT                 VVVSSIEKSLNNKEYTLIAFLDIEGAFNNVLPTAITDSLTELGVEAQLVGL
FT                 IHKLLISRMVTAALGASTQTRLVNRGTPQGGVLSPLLWNIAVNKLLRILEG
FT                 GGCKVVAYADDVAIIFNGKYPQTLCDLMTAKLKILSDWTIKNGLGVNPSKT
FT                 ELVLFTNKYKIPPLNPPILNNCNLSFSEHARYLGLVLEKRLXWGLNNQERI
FT                 KKATIALYSCKKAIGLRWGMSPKIVNWIYSAVVKPILLYGVALWWTALQKQ
FT                 CILTPLNKVQRMAALCISGALRTTPNEALNAILNLQSLDLAGMERAKSAAI
FT                 RLRDTGQWKAQLYGHAKILQHDKSIPAKTDLCKTREYSHTPFEALIPDREE
FT                 WDRGRPGSIDAICLYTDGSKLDGHVGGGIYSEQLXIRXSFRLPDHCSVFQA
FT                 EVHAIKEALXCXGDTNADRHXNIYSDSQAAIKSIYSTSTNSRTIADCRXSL
FT                 HEMAXQSTISLIWVPGHRDIVGNCIADELARQGTIMPLLPEKESVGMPMAT
FT                 CKLNIENHFIKLANTRWQNAPQCRITHQTWPGINSKKXRNYSNLVXQSAVC
FT                 "
XX
SQ   Sequence 5455 BP; 1603 A; 1442 C; 1346 G; 1042 T; 22 other;
     ttctcggcct gaagaactgg tgagatggtt ctgaagccgc ctagctgggg ccaccgagcg        60
     ggtcgcaggt tgcggatagc gaacgacctc tagttctgga ggttaactgt gaataagctg       120
     gtggtggaag tcaaccacgg aatcgtggac ggaagcccca gcaaataatc agtcccggac       180
     aaccagcggg tattctgcat cggagcagta ccgacgatgc gagttgttca gccacatcta       240
     aataattgct ctacacaaac cctataccct acacactacc tacccccttc ctctcccaaa       300
     caacatctca ctccgggccg gactacggtg taattcggac cgtgccaaga gtcagcctgg       360
     ctgggggccc ggatcaaaaa ctagcccagt cttgaacggt gagctcaggg atatggcgac       420
     cccctgttct aactatcgcc ttacccgggc atcgcggatc tctgcccggg cggacctttc       480
     cccttctccg caactcgtgg gatctattat ggacaaaaca attaacaaaa ttaaacaaga       540
     gacgggaact cttaaaaaac ccacagaaat gccgagcgct ggctccaaca cacacaccag       600
     cacggtccag aaagggccgc atcccaaatt ggggatgacg ggaggcagaa agccggctgc       660
     cgatacgtcc gccacagatg cgatagcact aacggcaacg gtaggcactg ccaaggcgat       720
     cgggccaacc actggtgcag taaaacacct acgcagaaag gmggactgcc gccagactct       780
     gcgctcacat gcaaggagca acattgccac accttcgcca gaatggctga agaaggtaga       840
     gtgggcaaag ttggtgctcc ccaactatgg gcaggataag cccacacaag aaggtgctca       900
     gacgaagcgg caacgatccc tcgagctacc cggaccttcg gcgaagagat caaaggtcca       960
     gccctcggtc tccttcgcgg agatcaccaa agatcgagtc ctactcggtc ttatcgataa      1020
     gggaaacccg gaaggacgaa tccccagaaa caagtggaaa gcagtggagt cccacctgtc      1080
     catcatatgc ctgcgcatga tccgcgaaaa cccatgctct ccgccctgct gcatggacgc      1140
     gggatggtac caaggcagcg tcaaagtggt agcctgcgat agtcagcggt cggctgatct      1200
     atacaagcag gcggcaagta agctcggtgc ggtctacgag ggggcgaata ttgtcgcact      1260
     tgactggtgc gacgtcccta gtaggccccg agcccggatc tggctcccag cagctatgaa      1320
     ggccccggag gacatcctct acatgctgca agtttgcaat ccgcacctcc ccacgaagga      1380
     ctggagagtc gtcaaggtgg aggaacacga aggggacgtt aaccaggcgg ttatggtcct      1440
     gaacaaggag tcagttgcgc caatagaagc ggctcgggga agctgaactt cgggtttagc      1500
     gcagtgcaat gaagatctac aagggcgact caaacgctgc cggaaactcc gcgggcaatc      1560
     ctgccgaaca ggtgcttgcc gaggaagtgg aggcgcctgg agggccggag gacggctatt      1620
     ccaccgattc ctcgcttagc agggaaatgc gagcgctggg accggcaatc gacgaggtgg      1680
     acctgagcga ctcggaggcc gacgttactg tggtggaggt tacagctggg gatgtcgcta      1740
     agactcctgc agataaacct acaccacagt aaagcagcgt ccgctgctct atcgcttcgc      1800
     ctggccaagg gcgaagccga cgtggtccta gtacaggaac cttgggtagt aggaggcaag      1860
     gttgctggac tgggaacgag agagtataag ctaatgcttg accccaaaga aggtaaaatt      1920
     cgaacctgca ttttggccaa aaggcaccta aatatatttc tgcttcgcaa ttacagcaac      1980
     ggagataaca cctcagtaag cctggagctg cagcacggct ccattaggct gctatcggcc      2040
     tatatggcct tcgaaaagga agacccccca gacgcgctag tcagaggact ggcaaaggaa      2100
     tgcgaagagc tcaagacagg tttggtaata ggctgtgacg ccaacgccca tcacacccag      2160
     tggggttgcc caaacaacaa cgacagaggt gagtctctct ttgactttat tcttaactcg      2220
     aacttattct tatgtaatag gggaaatgtc cccaccttca taaccaaagc atgccaaacg      2280
     atcatagatc taacgttggt atcagattta ctggtaagtg cagtcacaaa ctggttcgtc      2340
     tcagacgaac actccttctc tgaccacaga tacatagaaa taatattgtc ccttgattca      2400
     cccatgccgg tcggcttcgc taatcccaga cgggccgact ggcacatgta caaagaagtt      2460
     ctgacgaata tcctccccat ggtaccgcca gaaagcatta taggcccaca agggctagat      2520
     acaacagtag atattttcac agaagcatgc aactcggcct tcaaagtcgc atgccccata      2580
     gggagaccaa gagggaagaa aaaacccacc tggtggaccc aacaactatc aatcctcaga      2640
     tcaaactgca gatgcctgtt taacagagca aaggcaggaa atgaggacgc aaactggcag      2700
     cgttacaagc tagaattagc cttgtacaaa aaggccatta gaagagcaaa acgtactgca      2760
     tggcaaacgt tctgctctga catagaaaaa acgactgatg ctgcaaggct caggaaaata      2820
     ctctccaaga cagccgcgcc cctaggctat ctccagaaag caaatggatc ctggtcagac      2880
     tctagcgacg agtccttaga cctacttcta gatgctcact tcccaggtag ccaacatgta      2940
     ggccaacccc cagaaagaat tgscggcgaa gggatcaatc tagatctcct catatcagac      3000
     cgcaacatta aatgggccat tcagagcttc aaaccataca aatcgccggg accggacggg      3060
     ataacaccgg cacatatcca acaagcagga cagctggcca taaattggct cagtaaaatc      3120
     ttccacacca ttctggcagt aggagaacta ccaacagcat ggcgagaaac gaaagtggtc      3180
     ttcattccca aggcagggaa ggccacccac accacagcaa aggacttcag gccaataagc      3240
     ctgacatcat tcctgctaaa gagttttgaa agactgatta gcctacacct gagagccacc      3300
     atcgacccga cacaaatgtc agaggcacaa catgcctaca ccaaaggtaa gtcaaccgaa      3360
     tcggcgttac acgtcgtggt aagcagcatt gagaaatcac tcaataataa ggaatacaca      3420
     ctgatcgcct tcctagatat agagggagct ttcaacaacg tgcttcccac agcaataaca      3480
     gattccctca cagagctagg ggtggaggct caattggtgg ggctgatcca taaactgttg      3540
     ataagcagaa tggttacggc cgcactaggg gcctcaaccc agactagact agtgaacaga      3600
     ggcaccccgc aaggaggtgt actatcaccc ctcctgtgga atatcgcagt aaataaacta      3660
     ctgcgaattc tagaaggagg gggctgcaaa gtagtagcat acgcggatga tgtcgctatc      3720
     atctttaatg gtaagtatcc acaaacactc tgcgatctca tgaccgcaaa gctaaaaata      3780
     ttatcggact ggacgataaa aaacggactc ggggtaaatc cctcaaaaac ggaacttgtt      3840
     ctatttacga ataagtacaa gatccctcca ctcaacccac ccatactaaa caactgcaat      3900
     ctctctttta gcgaacacgc cagatacctg gggttggtat tagaaaagcg gctcaawtgg      3960
     ggcctaaaca accaagagag aatcaaaaaa gcaaccattg cactttactc ctgtaaaaag      4020
     gcaattgggc taaggtgggg catgtcccct aaaattgtca actggatcta ctcagcggtg      4080
     gtcaagccaa tccttctata cggggtggct ctatggtgga ccgctctaca aaaacaatgc      4140
     atcctaactc ctctaaacaa agtacagcga atggcggctt tgtgtattag tggagccctt      4200
     cgaactaccc caaacgaagc gctgaacgcg atcttgaacc tccagagcct ggacttagca      4260
     ggcatggaaa gggccaaatc ggcagctatt cgactgaggg atacagggca atggaaagcc      4320
     caactctacg gtcacgctaa gattcttcag catgataaat cgataccggc aaaaacggat      4380
     ctatgtaaaa cccgtgaata cagtcacaca cccttcgagg ctctgatccc agatagggaa      4440
     gaatgggatc ggggccgacc gggctcaata gacgcaatct gcttatatac agacggctcc      4500
     aaactagacg gacacgttgg cggaggcata tactccgaac aactagasat caggmagtcw      4560
     ttcagactcc ctgaccactg cagcgtcttc caagcggagg tgcatgctat aaaagaggca      4620
     ctcgwctgcw taggggacac maacgcctaa gacagacacm twaacatata tagtgatagc      4680
     caggcggcta ttaaatcaat ctactcgaca agcaccaact cccgaacaat agcagactgt      4740
     cgcawatctc tccacgagat ggctagwcag tctactataa gcctaatatg ggttccgggt      4800
     caccgggaca tcgtaggcaa ctgcatagcg gacgagttag ccaggcaagg caccatcatg      4860
     cctctccttc cagaaaagga gagtgtcggt atgcccatgg cgacttgcaa gctaaatatc      4920
     gaaaaccact tcatcaaact agccaacact aggtggcaaa atgcaccgca gtgtcgtatc      4980
     acccaccaga cctggcctgg gataaacagt aaaaaasawc ggaattactc aaatttagtc      5040
     gmacagagtg cggtatgcta gttcgagtcc ttacaggcca ctggctagtc ggcacacacg      5100
     ccggcaggct aaaagmcccg tacaatgact tctgcagaag ctgcagggac gaggaagagg      5160
     aggaaacggt ggagcacctc ctatgcttct gcccagccct atgcagacta aggctgaaac      5220
     acctaggaaa mcccttcatt agcgatctga ccgaaatatc ggagatcagc cttaaaagta      5280
     taaactcttt cgttaaatct tccgggtgga agacatgcta aktatccaaa ttttctagga      5340
     cgagagataw aagacagggg accccaaata agkgaaagag atcacacggt accacaatgg      5400
     acccacagag gtctaagtgt ctggcagccg tttctaamct aacctaccta accta           5455
//
ID   LOA-1B_FoCa repbase;    DNA;    INV; 5311 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1B_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5311
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2720-2720 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated. The consensus is ~91%
CC   identical to that of LOA-1_FoCa.
XX
FH   Key           Location/Qualifiers
FT   CDS           9..1403
FT                 /product="LOA-1B_FoCa_1p"
FT                 /translation="MGGXXXSQEXTWLWRRVSXGXEGLPPHXXCGESPHXR
FT                 PLTHRNXYIYXFILIMWTAISPNSVGLWLSYIILLFFVNXSPSRNEGEEXM
FT                 EEEILKPEGEEGDLPLPFXVEESLLTDEEHPPFEDAVCGGQGEEMETGGDA
FT                 GSGTLPLPPITTXSNNNGPNSRTVRRRARRQRAKALRAGGAPPAPASNDDV
FT                 TATAXTTITAPTTTTTTTTTTXTATXATATGSXVFPSTPTTRGGXERVKRV
FT                 NLHEIDPXLKKEAAGSSSSATTNKKRGRXTPXSNNPREKKXPXTYRDAAIE
FT                 GSEVVITYKDDPHRPLSKKDQXVIQEGLRSAIYAAAXXTQLKFGGIVIRGE
FT                 GIVLTCRDPTTKLWAEGEVDKLEGGKFATCDPKPPEEEVKVSFWVREATPP
FT                 LAKVLFPTISRLNKDMDTTTWRMTHSIRSGQGHVCFCRIPKSGVAALKPPA
FT                 EFNYYFDELVFRVTETPLQN"
FT   CDS           1432..5202
FT                 /product="LOA-1B_FoCa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTNNNITNNTPSHSSTSLRNGLSSFNMTTKSVNLVQI
FT                 NLQHSKQGTTSLCLTLAELHTYICLIQEPYWYRGKIRGLGGCGNLQFFCRD
FT                 AHSSRSCIITSRDIKVWPLLDLCCRDVTAIRTQWVGIGEVVIASVYMDRNY
FT                 ACPPEEMCRLVSYCETNGLPLVIGSDTNAHHTMWGSTNINSRGAQLLDYIT
FT                 QVDLHPINRGHRATFVVSNRKEVLDVTFVSSHLLERIKAWWVDDNESCSDH
FT                 RYIRASLSLGPPDPIIYRDRKRTRWDLYKSELKRLTELDPASTCPMSSTDE
FT                 IEECASRVCDFILKSYDVACPEKVLKSRRKRVPWWSRELTLLRKEARRLYR
FT                 VARFGGEEEWAEYKAARNHYSYELRRSKTASWRRFCESVEEAPVAARLSRI
FT                 LRNDGTIKLGSLDKGGGAYTRTLSETYDLLLDQSFPRDPQRVPWEPDHRKM
FT                 DDESINLMXTSSKISNIINSFGPLKAAGKDGIFPALLQRGLAELIPYLVPL
FT                 MRGCLTFGYTPLKWRESRVVFLPKPGKESYERASAWRPICLTSFLLKILEK
FT                 LVDGWVRTPALVDRLQRHSQYAYMKGVSTEAALHQIVSLVEGALDSGEYCI
FT                 AVMLDVKGAFNEVRSDSIIRSLRRFGVNEVCVRFIEHMLRTRTTWVTDSTH
FT                 EIGRVVERGCXQGGVLSPLLWDLVVSEILEKLHLRFPQLYSQGYADDLTTV
FT                 GRGIDLGTVGSHVQRAVNLVSDWCKEVSLSVNDKLALVLFTRKYKFTAPVI
FT                 KLDGIPIPYQKQVRYLGVLLDHKLNWGPLCRARAQKGLRALAQCRRAIGKT
FT                 WGLSPKITNWIYKSIIRPAMEYGSLLWAPATQVKSHMAQLQRVQRFAMLGT
FT                 TGVMSSTPTAALECLLGLAPVDIRVQQVALRTYHRLAHHGQWRKWSGGDRT
FT                 MVLKHNKFVEIMASGIPEFQMPCEKLVNPPAERNFSTSICSAQDWEDGSVP
FT                 TDAADVSCFTDGSRMGESSGAAYYFTYNNLVQEAVRCSIPLGWAPTVFQAE
FT                 IMGVIRASEMLTDNSQNYGLNVDFFIDSQGAIKALTSPWPVSSLTAEAIEM
FT                 LNHIGETKKVTLHWIPSHHGFEGNEVADLLAKEGTLTEYLGPQPSIPLSRS
FT                 TVISSIVNWARLQHTKSWKSSKGCLTSKAFLFAPLSGLSRKLLTLNRNNLR
FT                 SVIQTLTGHCTLNGHLRTMGLVDEATCLCGRGPETVFHFLGSCDKYCALRL
FT                 ELFGRHDLPPEQIVTMPLPDLIQFIIRSGRFVDQVRSVNRESHNSAQ"
XX
SQ   Sequence 5311 BP; 1387 A; 1269 C; 1355 G; 1252 T; 48 other;
     accccgacat gggaggaagk wgcmgctccc aggaaagkac ctggttgtgg aggagggtga        60
     gtgwggggga kgagggactc cctccacatg wwwtgtgtgg agaaagtcct caccmmcgwc       120
     ctctcaccca ccgcaacckc tacatttatt kttttatatt aattatgtgg acagccataa       180
     gcccaaattc tgtgggctta tggctgtcat atattatttt actttttttt gtaaatamct       240
     ctccttccag gaacgaagga gaggaackta tggaggagga gatcctcaaa cctgagggcg       300
     aagagggaga cttacctctc cccttcgwgg ttgaggaatc actcctcaca gatgaggagc       360
     atcccccttt tgaggatgcg gtttgtggtg gccaggggga ggagatggag acgggkggtg       420
     acgcagggag tggaacactg ccactacccc ccatcaccac caaktccaac aacaatggcc       480
     ccaacagccg tacggtgagg aggagggcga ggaggcaamg ggcgaaggca ctgcgggctg       540
     ggggtgcgcc tcctgccccc gcatccaatg atgacgtcac tgccaccgcc amcaccacca       600
     tcacggctcc taccaccacc accactacca ctactactac wmmaactgcc accagsgcca       660
     ccgcgactgg gagcakkgtc ttcccctcca ccccaacsac tcgkggagga gkggagagag       720
     tgaagmgggt caatcttcac gagattgacc ccwcactaaa aaaagaagct gctgggtctt       780
     cttcctcsgc caccaccaac aagaagagag gcagggmgac cccagmctcc aacaatccsa       840
     gggagaagaa gmgkcccwcc acctacaggg atgccgcgat cgagggcagt gaagtggtca       900
     ttacctacaa agatgaccct caccgccctc tttccaaaaa agaccaagam gtcatccagg       960
     agggacttcg ctctgccatt tacgctgcag cagmgamtac scagctcaag tttggaggwa      1020
     ttgtgatccg gggtgagggc atagttctsa catgccgtga ccccaccacc aaactttggg      1080
     ccgaagggga ggtggacaag ctggaagggg ggaaattcgc cacctgcgac cctaaaccac      1140
     ccgaagagga agtgaaggtg agcttttggg tcagggaggc gacaccacct ttagccaagg      1200
     tactcttccc caccatctct cgactcaaca aggatatgga cacgaccact tggaggatga      1260
     cacattcgat aaggtcaggt caaggtcatg tctgtttctg tcgcattcct aaatctggtg      1320
     tggcggcctt aaaaccgccc gctgaattta attactattt tgatgagttg gtgtttcggg      1380
     taactgaaac accccttcaa aattaacttc gcgtcataac cctcactcac aatgactaac      1440
     aataacatca caaataatac accatcacac tcatctacat ctcttcgaaa cgggttgtca      1500
     tcattcaata tgacaaccaa aagtgtgaac ttggtgcaaa ttaacttgca acactcaaaa      1560
     cagggtacga cttctctatg tctcacccta gcagagttgc acacatacat ttgcctaata      1620
     caagaaccgt attggtatag aggcaaaata cgaggtctgg ggggttgtgg caacctacaa      1680
     tttttttgtc gggatgccca ctccagcaga tcctgtatta tcacaagtag ggacatcaaa      1740
     gtgtggccct tgcttgactt atgctgtaga gatgtcacag ccatccgtac ccagtgggtg      1800
     ggaattggag aggtagtgat agcctcagta tatatggaca gaaactatgc atgcccccca      1860
     gaggagatgt gtcggttggt ctcatactgt gagaccaacg gtctacctct ggtgataggg      1920
     agtgatacca acgcccacca caccatgtgg ggaagcacca atatcaacag caggggtgca      1980
     caactattgg attacatcac acaggtggat ctgcacccca ttaatagggg acacagagcc      2040
     acctttgttg tatccaatag gaaagaagta ttagatgtca cttttgtatc ctcccacttg      2100
     ctggaacgaa taaaagcttg gtgggtcgat gacaacgaaa gttgctccga ccacaggtat      2160
     attagggcca gcctcagcct tggtccccct gaccctataa tctataggga caggaagaga      2220
     acaaggtggg acttatacaa atcagaatta aaaagattaa cggaacttga ccctgcgagt      2280
     acatgcccaa tgtcatctac ggatgaaatt gaggagtgcg ctagtagggt ctgtgacttt      2340
     atccttaaat catacgatgt ggcctgccct gaaaaggtac tcaaatctag gaggaagagg      2400
     gtaccttggt ggagccgtga gctgacactt cttcggaagg aggctcgtag gctttatcgg      2460
     gttgcccgct tcggaggaga ggaagaatgg gcggaataca aagctgctcg taaccattac      2520
     tcctatgagt tgaggaggag caaaaccgcc tcgtggagaa ggttctgtga gagtgtcgag      2580
     gaggcacctg ttgctgcccg actttctcgc atccttcgaa acgatggcac catcaaatta      2640
     ggatcactgg ataagggtgg cggtgcttac accaggaccc tatcagagac ctatgattta      2700
     ttactggatc aatcgttccc aagggaccct caacgggtcc catgggaacc tgaccataga      2760
     aaaatggatg atgaatccat aaatctgatg atnacatctt caaaaatcag caatataatt      2820
     aactcgtttg gcccactaaa agcggccgga aaggatggta tctttccggc ccttctacag      2880
     cgtgggctag cagagctaat tccgtatttg gttcctctaa tgagggggtg cctgaccttt      2940
     ggttacacac ctctcaaatg gagagagtcc agagtggtat tcttaccaaa gccaggaaag      3000
     gagagttacg aaagggcgtc cgcttggagg cccatctgct taacatcctt tctgctaaaa      3060
     atactcgaga aattggtaga tggctgggtc cgcacgcctg ctcttgtaga cagactgcag      3120
     agacacagtc agtacgctta tatgaagggc gtctccacgg aggctgccct tcatcagatt      3180
     gttagccttg ttgagggggc ccttgactct ggcgagtact gcattgcagt gatgctggat      3240
     gtgaagggcg cttttaatga ggttagatca gattccatta tccgcagcct taggaggttt      3300
     ggcgtcaatg aggtatgtgt tcgatttatt gagcacatgc ttcggacacg aaccacttgg      3360
     gtaactgact ctactcatga gattgggagg gtggtggaga gagggtgccs tcaagggggt      3420
     gtcctttcac cacttctctg ggatcttgtc gtgagtgaaa ttctggaaaa actgcatctt      3480
     cgtttccctc aactgtactc acagggctat gccgacgatc tcacaactgt ggggcggggc      3540
     attgaccttg gtacggtggg gagtcatgtg cagagagcag taaatcttgt tagtgactgg      3600
     tgcaaagagg tgagcctgtc agtcaatgat aagcttgccc tagtactatt cactaggaag      3660
     tacaaattca ctgctcctgt gatcaagttg gatggtattc ccatccctta tcaaaagcag      3720
     gtaagatatc ttggggtctt attggatcac aagttgaatt ggggcccact atgcagggct      3780
     agggcacaaa aaggtttgcg tgccctggcc cagtgcagga gggccattgg taaaacttgg      3840
     ggtctttccc caaaaatcac aaattggatc tacaaatcca taattcgccc ggccatggaa      3900
     tatgggtcac tattgtgggc tccggctaca caggtgaagt cccacatggc ccagctgcaa      3960
     agagtacaaa ggtttgccat gcttggtaca accggtgtaa tgtctagcac tcctactgca      4020
     gccctggagt gtctactggg gcttgcccca gtggatatcc gggtacagca agttgcacta      4080
     cgtacctacc atcgcctcgc tcaccacggc caatggagaa aatggtctgg gggtgatcgg      4140
     acgatggtgc taaaacataa caagtttgta gaaatcatgg catctggcat tccwgaattc      4200
     cagatgccat gtgagaaact tgttaatcca ccagcagaga ggaacttctc aacctccatc      4260
     tgttcggcgc aagattggga ggatggtagc gtgcccacgg atgccgctga tgtgagctgt      4320
     tttacagacg gctcacggat gggcgagagc tcgggtgcgg cttactactt cacatacaac      4380
     aaccttgtcc aggaagctgt gaggtgctct attcctctgg gatgggcacc cacggttttc      4440
     caggcagaaa ttatgggtgt tatcagggcc tctgaaatgt tgaccgacaa ttctcagaac      4500
     tatggcttga acgttgactt cttcattgat agtcagggtg ccattaaagc actcactagc      4560
     ccatggccag tttcatcact gactgctgag gctattgaga tgctaaatca tattggggag      4620
     actaagaagg taacacttca ttggatcccc tctcaccatg gatttgaagg gaatgaagtg      4680
     gctgatttgt tggccaagga aggtactctt actgagtatc ttggcccgca gccctctatt      4740
     cctctttcca gaagcactgt aatctccagc attgtaaact gggcaagatt gcagcatacc      4800
     aaatcgtgga aaagcagcaa gggttgttta acttccaaag cttttctctt tgccccttta      4860
     tcagggctta gcagaaagct tttaacccta aatcggaata atctgcgatc agtaatacaa      4920
     accttaaccg ggcattgtac tttaaatggg caccttagga caatgggatt agttgatgag      4980
     gccacgtgcc tatgcggccg tggccctgag actgtatttc attttcttgg atcctgtgac      5040
     aagtactgtg ccctaaggtt agaactcttt gggaggcacg atttgccacc agagcaaata      5100
     gttactatgc ctctgcccga tctgattcaa tttataatca gatcagggcg gtttgttgat      5160
     caagttagat cggtaaatcg tgagagtcat aactctgcac agtaagcggt gtatacgggg      5220
     agactgcaat aagccctagt gcttgcgcag ctgacggtcc agtctaacaa tggcaggatc      5280
     gtcaccccac caatacatac atacatacat a                                     5311
//
ID   Loa-1C_DT   repbase;    DNA;    INV; 3368 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DT;
KW   Loa-1B_DT; Loa-1C_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3368
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1712-1712 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~89% identical to Loa-1B_DT.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3368 BP; 1074 A; 848 C; 749 G; 691 T; 6 other;
     gcgaagagct caagacaggt ttggtaatag gctgtgacgc caacgcccat cacacccagt        60
     ggggttgccc aaacaacaac gacagagtga gtctcttttt gactttattc ttaactcgaa       120
     cctattttta tgcaataggg gaaatgtccc caccttcata accaaagcct gcaaacgatc       180
     atagatctaa cgttgtatca gattcactag taagtgcagt tagaaactgg ttcgtctccg       240
     accagcactc tttctcaaac aatagattca ttgaaacaat attgtccctt gattcaccct       300
     cgccggtcag cttcgcgaac cccagaaggg ctgactggcc tatgtacaaa gaagttctga       360
     cgaatatcct tcccacggaa ccgccagaaa gcacaaaaga tccaaatgag ttggatataa       420
     cagtagacat tttcacaaat gcttgcaact cggctttcaa agttgcatgc ccaataggga       480
     aaccaagagg gaagaaaaaa cccccctggt ggacgcaaca actatcaatc ctcagatcca       540
     gctgctgttt aacagagcaa aggcaggaaa cgaggaaacg aactggcaat gctacaagcg       600
     cgaattagcc tagtacaaaa aggcccttag aagagcgaaa cgagccgcat ggcacacttt       660
     ctgctctgac atagaagaaa cgactgatgc tgcaaggctc aggaaaatac tctccaagac       720
     agccgcgccc ctaggctatc tacagaaagc gaatggatcc tggtcggact ctagcaacga       780
     gtccctggac ctacttctag acgctcactt cccaggaagc caactaactg ggcgtcctcc       840
     agaaagaatt ggcggagaag ggatcaatct agatctcctc atatcagacc gcaacattaa       900
     atgggccatt cagagcttca aaccatacaa atcgccggga ccggacggaa taacaccggc       960
     acatatccaa caagctggtc agctagctat aaattggctt agtaaaatct tccgcaccat      1020
     tttggcggta ggagagctac caaccaaatg gcgggaaacg aaagtggtct tcattcccaa      1080
     ggcaggaaag gccacccaca ccacagcaaa ggacttcagg ccaataagcc tgacatcctt      1140
     cctgcttaaa agcttcgaga ggctgttaag cctacacctg agagccacca taaacccggc      1200
     acaactgtcc gaggcacaac acgcctacac caagggtaag tcaaccgaat cggcgctaca      1260
     tgtcgtggta agtagcatcg agaaatcaat caacaataag gagtacacac tgatcgcatt      1320
     cctagacata gagggagact tcaacaacgt actaccaaca gccataacag attcactcac      1380
     agaactaggt kttggggcac aactagtggg gctgatccat aaactgttga taagcagaat      1440
     ggttwcggcc gcactagggg cctcaactca aactagacta gtgaacagag gaacccsasa      1500
     agggggcgtt ttatcccccc ttctgtggaa catcgcagta aataaactac tgcgaattct      1560
     ggaaggagga ggatgcaaag tggtggcata cgcagacgat gtcgccatca tatttaatgg      1620
     taagtatcca caaacactct gcgaccttat gaccgcaaag ctaaaaatac tatcggaatg      1680
     gacgataaaa aacggactcg gggtaatccc tcaaaaacgg agcttgttct ttttacaaat      1740
     aagtacaaga tcccacaact caacccaccc atattaaata actgcaatct ctcttttagc      1800
     aaacacgcca gatacctggg gttggtatta gataagcgcc ttaaatgggg cttaaacaac      1860
     taagagagaa ccagaaaggc aaccattgca ctttactcct gtaaaaaagc aattgggcta      1920
     agatgggcca tgtcacccaa aattgtaaac tggatctaca cagcggtagt caagccaatc      1980
     ctcctatacg gggtggcttt atggtggacc gctctacaaa agcaatgtat cctaactcca      2040
     ctaaacaaag tacagcgaat ggcggccctg tgtattagtg gagcccttag aactacccca      2100
     aacgaagcgc tgaatgcgat cctgaacctt ccgagcctgg acttagcagg catggaaagg      2160
     gccaaatcga cagccattcg tttgagggat actgggcaat ggaaagccca attttacggt      2220
     catgccaata tacttcagca tgataagtcg attccgaaga aaacggacct atgcaaatct      2280
     catgagtaca cacacacacc cttcgaggcc ctgatcccag atagggagga atggcagcag      2340
     ggcagaccag gctcgccaga cgcaatctgc ttctacacag atggctcaaa attggacggg      2400
     cacgttggcg gaggggtata ctccgaacaa ttagacatca gaaagtcatt cagactcccg      2460
     gaccactgta gcgtcttcca agcggaggta cacgctataa agaaggcact cgactgctta      2520
     gggaacacca gcctaagtag acaccttaat atatatagtg atagccaagc ggctattaaa      2580
     tcaatctact cgacaaacac caactcacga acaatakcag actgtcgcaa atctctccac      2640
     gagatggcta gwcagtttac tacaagccta tatgggttcc gggtcaccgg gacatcgtag      2700
     gcaactgcat agcggatgag ttagctaggc agggcaccat catgcctctc cttccagaaa      2760
     aggagagtgt cggtatgccc atggcaactt gcaagctaaa cattagaaat caatttatta      2820
     aaatagccaa cactaattgg cagaatgcac caaagtgccg tatcactcac cagacatggc      2880
     cgatgattaa caataaaaga acgtcagcac tactcaaact cagccgcaca gagtgtggta      2940
     tgttagttag ggcccttaca ggccactggc tagtcggcac acatgccggc aggctaaaag      3000
     ccccgaaaaa tgatttgtag gagctgcagg gatgaggaag aagaagaaac ggtggaacac      3060
     cttctctgct tctgcccagc cctttgcaga cttagactga agcacttagg ataccccttt      3120
     cttaacgatc tgaccgaaat atcggagatc aagcttaagg acttaaactc ctttgtaaaa      3180
     tcttcagggt ggaagacatg ctaatcatcc ggaaatgctc tctaggcttc taggacgaga      3240
     cataagagac aggggatccc gaaaaaaggg aaaaaacgag atcatacggt atcacaacgg      3300
     acccacagag gtctaagtgt gccagacgat agtctggctg ccgttcgtac ctaacctaac      3360
     ctaaccta                                                               3368
//
ID   Loa-1_BTa   repbase;    DNA;    INV; 2472 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2472
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 714-714 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2380
FT                 /product="Loa-1_BTa_1p"
FT                 /translation="VRRTGRLDWHEARETVTVNRLKWAVKSFKPYKAPGPD
FT                 GILPALLQQGAEILQPALIRILRASLAFGYIPQGWREVRVVFLPKHGRKNF
FT                 DQAKAYRPICLPSFITKTLERLVDRRMCEGLLRVAPLHSHQHAYQIGKSTE
FT                 TALNSLVEQIERAMKSKEVALAVFLDIEGAFDNTSIDAILNSARTKGLNNT
FT                 TYRWVEALLRGCHVNADLYGESRRVRATRGCPQGGVISPKLWNLVADELLV
FT                 RLNEAGYYAQAYADDFVILIRGKHXNDLSDLMSGALRIVEEWCRDKNLRVN
FT                 PTKTTLVPFTRKYNXGNXQAPSIFGSEIKVADTVKYLGVYLDKRMNWNQHL
FT                 EHIINRAKRAMNLARRSVGKRWGLKPAITKWVYTSIVRPIITYAACIWWEK
FT                 TEQKGARNKLDSLQRLACLYTTGAVRTTPTAAMEVMLGLPPLHLAVKGEAV
FT                 AGAFRLKTNSLDGKLRPRHQSLCESPSFPPALHMVSDQMKTTYNFDIPYRL
FT                 RISEGEGNQKMVDDALAASEVSYFTDGSKSGDKTGAAVYGNKNCKLKASLG
FT                 RSTTVNQAELYAIMMAANNAIDKGWRDKRITFFSDSQATLKAVSNFKVNSK
FT                 LTMEGIQRLTRLANDNHVTLVWVRGHTGVRGNETADRLAKEASEENYIGPE
FT                 PVFGLTKKGFRTTVRDWVMEEANKEWQNAEGMRHSKQMLEGYSRKMTANLL
FT                 HRSREQLGILSGLLTGHNLLRKHMHRMGIFKDEPKCRLCEVEEETAEHIIF
FT                 DCEALEKKRQDIRGDNSWDDCLAPELVAGTLLQLVEGEGFWD"
XX
SQ   Sequence 2472 BP; 791 A; 544 C; 676 G; 458 T; 3 other;
     cgtaaggagg acgggcagac tggactggca cgaggcgagg gaaactgtca cggtcaacag        60
     actaaagtgg gcggtgaaat ctttcaaacc atacaaggca cctggacctg acggaatact       120
     gccagcacta ttacaacagg gagctgaaat attgcaacct gcgcttatca ggatcctaag       180
     agccagcctt gcatttggtt acatacctca agggtggagg gaggtcagag tggtctttct       240
     gcccaagcat ggccggaaga acttcgacca ggccaaggca tataggccta tctgtcttcc       300
     ttcattcata actaaaacac tggaaaggct agttgacaga aggatgtgtg aggggctact       360
     gagggtagca ccattgcaca gccaccaaca tgcctaccag attgggaagt ccacggagac       420
     agcactgaat tcccttgttg agcaaatcga acgagctatg aagagcaagg aagtagcatt       480
     agctgttttt ctcgacatcg aaggagcgtt cgacaacaca tccattgatg cgatattaaa       540
     ctctgccagg acaaaagggc tgaacaacac cacatacaga tgggtagagg ccctccttag       600
     aggttgtcat gtaaatgcag acttgtacgg agaatcgaga agggttcgcg caaccagggg       660
     ctgcccacaa gggggagtca tctctcccaa attgtggaac ctggtagcag atgaacttct       720
     ggttcgtcta aatgaggctg gatactatgc gcaagcatat gcagatgact tcgttatact       780
     gataagagga aaacactgsa acgacctctc agacctaatg agcggagctc tcaggatcgt       840
     ggaggagtgg tgcagagata agaacctcag ggtgaatcct acgaagacga cattggtccc       900
     attcacaagg aaatacaacc waggtaacat scaagctcca agcatttttg gaagtgaaat       960
     taaggtggct gacacagtca aatatctagg tgtctaccta gataaaagaa tgaactggaa      1020
     ccagcaccta gagcacatca taaaccgagc aaaaagggcc atgaatttgg ccagaaggtc      1080
     ggttggcaag aggtgggggc tgaaaccggc gataaccaaa tgggtctata cgtcgatagt      1140
     aagacccatc ataacatatg cagcatgcat atggtgggaa aaaacggagc aaaagggagc      1200
     tcggaataag ctggactcgc tgcaaagact ggcatgcttg tacacgacag gagcagtgag      1260
     aacaactcca acagcggcaa tggaggtgat gctaggcctg ccacccctgc acctagcagt      1320
     gaagggggag gcagtagcag gagcctttag gctgaaaacc aacagcttag atggcaaact      1380
     gcggccaaga caccagtcac tctgtgagag tccaagcttc cctccggctt tacacatggt      1440
     ctctgatcaa atgaaaacaa cgtacaactt cgacattcca tacaggctcc gcatcagcga      1500
     aggcgagggg aaccagaaaa tggtagacga tgccctggct gcctcggaag ttagctactt      1560
     cactgacgga tctaagtcag gagataagac aggagcagcg gtgtacggaa acaaaaactg      1620
     caaactgaag gcgagtctcg gcaggagcac cacggtgaac caggcggagc tatacgccat      1680
     aatgatggca gcgaataacg ctatagacaa aggctggaga gacaaaagga tcaccttttt      1740
     ctcggacagc caagcaactc taaaagcggt atcaaacttc aaggtcaatt caaaattgac      1800
     catggagggc atacagaggc tcacaagact ggccaacgac aaccacgtca cattggtgtg      1860
     ggttcgtggg cacacaggtg tgagggggaa cgaaactgct gaccgcttag ctaaggaggc      1920
     atcagaggaa aattacatcg gaccagaacc agtgtttgga ctgaccaaaa aaggattcag      1980
     aacaacagtg agggactggg tgatggaaga ggcgaacaaa gagtggcaga atgccgaagg      2040
     catgagacat tccaagcaaa tgctggaagg ctactcaagg aaaatgactg caaacctgtt      2100
     gcatcgtagc agggagcagc taggtatact gtcgggatta ctgacaggac acaatctcct      2160
     gcggaaacac atgcacagga tgggtatctt caaggatgaa ccaaagtgta ggctgtgtga      2220
     ggtagaagag gaaactgcag agcatatcat cttcgactgt gaagctctgg aaaagaaaag      2280
     acaggacatc cgaggagata actcctggga tgactgtcta gcacctgagt tagttgcggg      2340
     cactctcctc caacttgttg aaggggaggg cttctgggac taaccaggaa ccaacaactg      2400
     ggcacaatag atcgagaggt cgcagtgcat ggggcaaccc accagaaaaa ggaaaaaaaa      2460
     aaaaaaaaaa aa                                                          2472
//
ID   LOA-1_CQ    repbase;    DNA;    INV; 3176 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3176
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 148-148 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3052
FT                 /product="LOA-1_CQ_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="SEVISEKILNWKVSDEESLSDHRQIEFEYNAGDIIKT
FT                 NYRNPKKTNWILYKKCIDVYEFNSGGEIRTVDQLENASSHLINGILNSYAA
FT                 SCPFQHNSSNREVSWWNDNLAALRKRSRKLFNKAKASGLWDSYRKSLTEYN
FT                 IEVRKSKRKDWNRSCEKIESTPVVARLQKALSKDHTNGLGNLKKADGSFTQ
FT                 DSSETLEVMMKAHFPDSIVVSSESDQASEGEGPTKDWSENAHLKSCEIFTQ
FT                 SKVEWAISTFKPFKSAGRDGIFPALLQHAKDKISIRLTELFRASISLGYIP
FT                 KAWREVRVVFIPKAGKKDKTNAKSFRPISLSSLLLKTMEKILDDFIKGTYL
FT                 KNYPLSKSQFAYQSGKSTITALHSLVTKIEKSLLNKELALCAFLDVEGAFD
FT                 NASHCSMRSAMESRSFDLCVINWIETMLRNREISADFGGERLVIRPQKGCP
FT                 QGGVLSPLLWSLVVDKLLKKLAELGFEVVGFADDICIIVRGKLNNFITNRM
FT                 QSALNFTSKWCRSEGLGINPAKTVIVPFTKRTNTSLQKLSLCGVTIEFQSE
FT                 VKYLGVTLDKKLTWNPHLENVINKGINAFWVCKNTFGKKWGLRPKMIHWIY
FT                 TCIVRPRIIYAAVVWWQKTKQTAVQKKLSKLQRLACISITGAMNSTPTEAL
FT                 NALLNLLPLNQFIELQAVKSALLMNRSVKIQEKDMTGHLELLKTFNLNPTL
FT                 NSIVDWMPTRANYDVPFNVVATSRYIWEQGGPTLRSGSIVFYTDGSKMHNM
FT                 TGAGVFGPGIKKFISMGLYPTVFQAEIFAIIECIHICLNRNYRYSNICIFS
FT                 DSLAALNALKGYTCQSKLVWEAIMLLKQLSLKNTVNLYWVPGHCGIDGNEA
FT                 ADCLAREGSGTNLIGPEPFFGIPDCSLKMELKRWETSMVMSNWNAAIACRQ
FT                 SKRFIYPCEKSSRVLLKLDKRNLRIIIGLLTGHCPCRYHLVKMNKLQDSRC
FT                 RFCNIENETSEHLLCECSALIQRRILFLGKGFLLPKDIWEASPSRVIDFIK
FT                 RVDPNWDECSF"
XX
SQ   Sequence 3176 BP; 1080 A; 528 C; 632 G; 936 T; 0 other;
     cagtgaagtt atttctgaaa aaatcttaaa ctggaaagta tctgatgaag aatcgctttc        60
     agatcatcga caaattgagt ttgaatataa tgcaggagat attattaaaa caaattatag       120
     aaatcctaag aaaacaaact ggattttata caaaaaatgt attgatgttt atgaatttaa       180
     ttctggcggt gaaatacgaa ctgttgatca attagaaaac gcctcttctc atctgataaa       240
     cggtatttta aactcttatg ccgctagctg tccattccaa cacaattctt caaacagaga       300
     ggtgtcgtgg tggaacgaca atctagctgc gttaagaaaa agatcaagaa agttatttaa       360
     caaagcaaaa gcttctggat tatgggattc atacaggaaa tctttaactg aatataatat       420
     tgaagtcaga aaatctaaac gtaaagactg gaaccgctct tgtgagaaaa ttgagagcac       480
     accagttgtt gcaagattac agaaagctct ctctaaggac catacgaatg gtttagggaa       540
     tcttaaaaaa gcggatggca gttttactca agacagttct gaaacattag aagttatgat       600
     gaaagctcat ttcccagatt caattgtggt atcgagtgaa agcgatcagg cttcggaggg       660
     tgaaggaccg acaaaagatt ggtctgaaaa cgcccacttg aaatcctgtg aaatattcac       720
     tcaatccaaa gttgaatggg caataagcac atttaaaccg tttaaatctg ctggtagaga       780
     tggaattttt ccagccctac tgcaacacgc taaagataaa attagtatac gattaactga       840
     actttttaga gccagcatct ctctaggcta cattcccaaa gcttggagag aagtacgggt       900
     cgtatttata cctaaggctg gaaaaaaaga taagacaaat gctaaatctt tcagacccat       960
     aagtctttct tcattactat taaaaaccat ggaaaaaata ttagatgact ttattaaagg      1020
     aacatactta aaaaattatc ctcttagcaa atcgcaattt gcttatcaaa gtggtaaatc      1080
     aactattacg gcattacaca gcttagtaac gaaaatagaa aaatcattat taaacaaaga      1140
     attagcttta tgcgcatttc ttgatgttga aggagcattc gacaatgctt cccattgttc      1200
     aatgcgttca gcaatggagt caaggagttt tgatttatgt gtcataaatt ggattgagac      1260
     tatgcttaga aacagggaga tttcagctga ttttggtggt gagaggctag ttataagacc      1320
     acagaagggg tgtccacaag gtggagtatt atcacctcta ttgtggtcgc tagtagttga      1380
     taaactactg aaaaagttgg ctgaacttgg atttgaagta gttggatttg cagatgatat      1440
     ttgtataata gttcgcggaa agttaaataa ttttataaca aatcgtatgc aatcagcgtt      1500
     aaattttact tcaaaatggt gcaggagtga aggtcttggg attaaccctg ccaaaaccgt      1560
     gattgtacct tttacaaaac gaacaaatac ttctttacaa aaactttctc tctgtggggt      1620
     aacgattgag tttcaatctg aagttaagta ccttggtgtc actttagata agaaacttac      1680
     atggaaccct cacttagaga atgttataaa taaaggaatt aacgccttct gggtgtgtaa      1740
     aaatactttt ggaaaaaaat ggggacttcg tcccaaaatg atacattgga tttacacatg      1800
     tatagttcga ccaaggatta tttacgccgc cgtagtctgg tggcaaaaga ctaaacaaac      1860
     agctgttcag aaaaaattaa gcaaacttca aagattggca tgtatttcaa tcaccggagc      1920
     tatgaatagc actcctacgg aggcgctgaa tgctctgttg aatttacttc ctcttaatca      1980
     gttcattgaa ttacaagctg ttaaaagtgc attattgatg aaccggtccg taaagattca      2040
     ggaaaaagat atgacgggtc atttagagct cctcaaaacc tttaatctga atcctacgtt      2100
     gaactcaata gtagactgga tgccgactag ggccaactac gatgttccct ttaatgtggt      2160
     cgcaacaagt cgctacatat gggaacaagg aggcccaact cttcgttcag gctctattgt      2220
     cttttacacg gatggctcaa aaatgcataa tatgacagga gctggagttt ttggccctgg      2280
     gattaagaaa tttatatcga tgggtctata tccaacagtc ttccaagctg aaattttcgc      2340
     aattattgaa tgtattcata tttgtttaaa tcgtaactat agatattcta atatttgtat      2400
     cttctcagac agtctggctg ctctaaatgc actcaaaggg tatacctgtc agtcaaaact      2460
     agtttgggaa gcaattatgc ttttgaaaca attatcttta aaaaacactg ttaatctata      2520
     ttgggttcct ggacattgcg gaatagatgg taatgaagcg gcagactgtc tagccaggga      2580
     aggatctgga acaaacctga ttggaccgga acccttcttt ggaataccag actgttcctt      2640
     gaaaatggaa ttaaaacgtt gggaaacatc tatggtaatg tctaattgga atgcggctat      2700
     agcttgtaga caatcaaaaa ggtttattta tccttgtgaa aaatcatctc gagttttact      2760
     aaaactggat aaaagaaatc tcaggatcat aattggttta ttaactggtc attgcccttg      2820
     taggtatcat ttagttaaaa tgaacaaatt acaggattca agatgtcgtt tttgcaacat      2880
     tgaaaatgaa acatcagagc acctgctgtg tgaatgcagt gctcttattc aaagaagaat      2940
     tttattttta ggaaaaggat ttttgctacc caaagatatt tgggaagcga gtcctagtag      3000
     ggtaatcgac tttatcaaac gagtcgatcc taactgggac gaatgcagct tttaagtaac      3060
     gctcttcacg ctaaatggtg ctgggtgaac ttatctgcta taaaaaaagg gtcacaccac      3120
     aatattccta taattggtcg cagtggtatt atggctcgac aaaaaaaaaa aaaaaa          3176
//
ID   Loa-1_DAn   repbase;    DNA;    INV; 5552 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.03, Created)
DT   31-DEC-2011 (Rel. 17.03, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5552
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(3), 407-407 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           312..1457
FT                 /product="Loa-1_DAn_1p"
FT                 /translation="MTSGLCHDGRTPSRLLVGPKMNDNIITKKTNSGERNS
FT                 LRKSGNGIXDPSISKADRGQRDAGMAKLPTEGQHPEASGAGVGGDAKAPTP
FT                 KTGPTMGPPNGVGGKIPESSSSRTGGNPKEGPGPTTAGPLQRKGSYKDRRR
FT                 AAFILMRADPSAESNPDQAEIIKWAREILPDFQPARAGARLDPKKPTGVGD
FT                 SAKESAQSAKRQRSTDGGAPLAKKKKVQTQQSSRSFAEVTKGRTIIGVVDN
FT                 GSKDGLIPKELWRKVVNELHGRFMEEMLKSGGPPPDCEDAGWYQGSIKVIA
FT                 CQDARSVSLYKRMIASLGEVYPGARLEAVDWDKIPSKPRARVWLTEKPADP
FT                 ATILAMLKMCNPTLPTADWRVAKVEEAVGLRRQVVLTLK"
FT   CDS           1784..5386
FT                 /product="Loa-1_DAn_2p"
FT                 /translation="MSLTFLQINLHHSKVASAALLLHLAEDGADVALIQEP
FT                 WIHGDRILGLGASDFRLYTADVTGKKRACILAKKSLNTFLLPNFSNEDHVA
FT                 ASIEGPDGHLRICSAYMGHDHLGPPPHSLLRRLVEDSERKDIDLIIGCDAN
FT                 AHHSQWGSTDTNERGESIFDFILSSKLLVGNRGSEPTFVVKNRREVLDVTL
FT                 FSHSLADAITSWRVLDKHSFSDHRYIEIVVNFENFTKQAVRNPRKANWELY
FT                 KNILDRSLGEPPSETIETYEGLNAMVDKLTATSAKAYHKACPKKRIGSNRS
FT                 KKPPWWTSSLAPYKKNARRAFNHAHRTNTDEAWETYKAELRQYNKELRKAK
FT                 RVAWANFCTNIQETSEAARLRKILSTTAPIAGYIKNTEGRWTTSSLETLET
FT                 LINAHFPGCSSEGTTQVMRSQGHQGSLNYLLSDRNLKWAMDSFKPFKSPGP
FT                 DGILPAQLSRAGINLRKWIKKIFSTVFTTGMIPKAWLCTKVVFIPKAGKPS
FT                 HCTPKDFRPISLSSFLLKTMERLLSLHLQLNINPNDISCSQHAYKRGRSTE
FT                 TALHDITMIAERAINFKEYALVAFLDIEGAFNNILPCSIIDALTGLGIDNR
FT                 STHLIRQILVNRSVEATLGGSTIRRYVKRGTPQGGVLSPLLWNVAVNSLLR
FT                 SLEGGGCKIIAYADDVAIAFVGKFPQTLCDLMTGKLEVLSAWAQKNGLGVN
FT                 PSKTELVLFTRKYKIPNLRLPKLLGETLVLSDSAKYLGITLDRKLDWKLNT
FT                 ADRTKKAAIALYTCRKAVGLKWGMSPKMVRWLYTAIIRPILFYGVVVWWPA
FT                 LDNSSCREKFRKTQRMAEVCMTGSLRTTPSDALDTILDLLPVELMGVKTAT
FT                 LAAIRLREANLWSKNSFGHTRLDLXHFMPEGGTDYCVPVDQPTTNYKVLIP
FT                 SREEWXARIPGPEGSIHIYTDGSKLNGQVGGGYFCEHLSLKESFRLPDHCS
FT                 VFQAEVVAIKEALESPALRGNRGTICIFSDSQAALKALDGFSSNSRTVNDC
FT                 RRSLNEMAEQXDIYLIWVPGHRDHEGNCAADELARAGTTNPLLPEKELVGI
FT                 PLATCRLKCREFFDLAANRKWSNLQTCKTSRLIWPTRSQKRSARLIALTRP
FT                 ECSLAIGAITGHWLIGEHAARLAVPHNDFCRSCRDEEEVESVSHLLCHCPA
FT                 LGRSRLKHFGSEELSDLSDLSEISPRGLVAFIKKAGWDHGPP"
XX
SQ   Sequence 5552 BP; 1518 A; 1436 C; 1530 G; 1062 T; 6 other;
     ggccgtcagc caatcgggta caacaggggg agaaacgcat gagctcatgt gccgtaactg        60
     tgtacaccga tggtagtgcg actatactct ccacgtgagg gcggctggta acaggtcccg       120
     gttaggtcat gtctctgccg aggacgctgg ctaattgtag tcgggcgggg agaagaaaac       180
     tcccttcctc aaatcacccc aatccaaggt ggaacagcat atgccgaggg atgcatgtcc       240
     gggggatgca cggacgttaa tatgcggact ctgggggacc ggccgacccc tcagttttag       300
     ccaggcttat catgacaagc gggctatgtc atgatggacg aaccccttcc cgcctactcg       360
     tgggtccaaa aatgaacgac aacattataa caaaaaaaac aaacagtgga gaacggaact       420
     ccctaagaaa gtccggaaat gggatcncgg atccgtcaat ctccaaggca gatagaggcc       480
     aaagagatgc tgggatggcg aagctcccca ctgagggaca acatccggag gcgagcggcg       540
     ccggtgtagg gggagatgcc aaggcaccga cccccaaaac ggggcccact atgggaccac       600
     cgaacggtgt ggggggcaag atccctgaat cgagctcctc tcgcaccggc ggcaacccta       660
     aggaaggccc cggtccgacg actgctggcc ccctgcagcg gaagggctcc tataaagata       720
     ggaggagagc ggccttcatc ctaatgaggg cagacccatc ggcggagtcc aatcccgatc       780
     aggctgaaat tataaagtgg gcgagggaaa tcctgcctga ctttcagcca gcaagagcgg       840
     gagccagatt ggacccaaag aagccgacag gagtaggcga ctctgccaag gagagtgcac       900
     agagtgcgaa aaggcagagg tcgaccgacg gtggagcgcc cctagctaag aagaagaagg       960
     tgcagacaca gcaaagtagc agatccttcg ccgaagttac caagggcagg accatcattg      1020
     gggtcgttga taatggctcc aaagatggcc tgatccccaa ggagctttgg cgtaaggtgg      1080
     tgaacgagct gcatgggcgc ttcatggagg agatgctcaa gagcggagga cccccaccgg      1140
     actgcgaaga cgcagggtgg taccagggta gcatcaaggt gatagcgtgc caagatgcga      1200
     ggtctgtaag cctctacaag cgaatgattg cgtcgcttgg ggaggtttac ccaggagcca      1260
     gactggaggc ggtggactgg gacaagatcc ccagcaaacc gagggcccgc gtatggctga      1320
     cagagaagcc ggcggaccct gccaccattc tggccatgct caaaatgtgc aatcccacac      1380
     tccctacggc ggactggagg gtcgccaagg tggaggaagc agtgggactg agaaggcagg      1440
     ttgtcctcac tcttaaatga ggagactgcg aagatcctgg agggtgccgg tagccgtatc      1500
     aaatacgggt tcgagcacgt tgcggtgagg atctacaagt cggatgcgaa gagtaagcct      1560
     ggaggcatcg acttggagat ggacgcacag gagctagact cgggggaacc gaccgaagag      1620
     gtccgcccag aaggaatgtc ggatgtggag gaggacattc tggaagggta cacctcagag      1680
     gagagtgacc tggcgagggc tcttggtggc gtcggcatgg aggaggactc tttgctgggc      1740
     tccgacaccg aggcggaggt tactgtggtg gagaatctaa aggatgtccc tgacattcct      1800
     gcagataaac ctccatcaca gtaaggtggc ttccgccgcc ctcctgctcc atcttgcaga      1860
     ggatggagct gacgtggccc tcatccaaga accctggatc cacggagaca ggattctcgg      1920
     tctgggggcg tcggacttca ggctgtacac agccgatgta acaggtaaaa agcgagcatg      1980
     catactcgca aagaaaagcc ttaatacctt cttgctacca aatttcagca atgaagatca      2040
     cgtagccgca tcgatagagg gcccagacgg ccatctaaga atatgctcgg cgtatatggg      2100
     tcacgaccac ctaggacctc caccccattc gctactcagg cggcttgtgg aagacagcga      2160
     aaggaaggac atcgacctaa taataggatg cgatgccaac gctcatcaca gtcagtgggg      2220
     aagcactgac acaaacgaga ggggtgagtc aatcttcgat tttatcctca gctctaagct      2280
     tctagtgggt aacagaggtt cagaacccac cttcgtagtc aagaacagaa gggaggttct      2340
     tgacgtcaca ttattctcgc actccctggc tgatgcaatc accagctgga gagtccttga      2400
     caaacactca ttttcagacc atcgctatat tgagatagta gtaaattttg aaaacttcac      2460
     caagcaagca gtncgaaatc ctagaaaggc aaactgggag ctctataaaa atatactaga      2520
     tagatcctta ggcgaaccgc cttcggagac catcgagacc tacgaggggc tcaacgccat      2580
     ggtagacaag cttactgcga ctagcgcaaa agcttaccac aaggcctgcc ccaaaaaaag      2640
     gataggtagc aacagatcga agaagcctcc gtggtggacc tcgtctttag ccccgtacaa      2700
     aaaaaatgca cgtagggcct tcaaccacgc gcaccgtacc aacacagacg aggcgtggga      2760
     aacctataaa gctgaactta ggcaatataa caaagaattg cgcaaggcaa agagggttgc      2820
     ctgggccaat ttctgcacca acattcagga gacatcagag gccgcccgcc taagaaagat      2880
     tctctctact acagccccca tcgcaggtta cattaagaac acggaggggc gctggacaac      2940
     ctcaagcctg gaaaccctgg agacccttat caacgcacac ttcccgggtt gctcatcgga      3000
     aggaacaacc caggtgatgc gtagccaggg tcaccagggc tcgctcaact acctacttag      3060
     tgacagaaac ctgaaatggg caatggacag ttttaaaccc ttcaaatctc cgggaccgga      3120
     cggtattcta ccggctcagt tatccagagc cggtattaac ctaaggaaat ggattaagaa      3180
     aatcttcagc acagtcttca ctactggtat gataccaaag gcgtggctgt gcacgaaggt      3240
     tgtattcata cccaaggcgg ggaaaccatc ccactgcacc cccaaggact tcagacctat      3300
     aagtctgtct tcctttctcc ttaagactat ggaaagactc ttaagtctcc atctacaact      3360
     taacattaac ccaaacgaca tctcatgctc tcagcatgct tacaaaaggg gccgatcaac      3420
     agaaacagcc ctgcacgata tcactatgat cgccgaacga gcgattaatt ttaaggaata      3480
     cgcacttgtg gcttttctag acatagaagg ggccttcaac aacatcctac cgtgctcaat      3540
     aatcgacgca ctgacgggac ttggaataga caatcgatca actcacctaa tacggcagat      3600
     cctggttaac aggagtgtcg aggctacnct tggaggttcg actattcgaa gatacgtcaa      3660
     gaggggcacc ccgcaaggag gtgtactctc accactactc tggaacgtgg cggttaacag      3720
     cctactgcga tccttagagg gtggcggatg taagatcatt gcgtacgcgg acgatgttgc      3780
     tattgccttc gtggggaaat tcccacagac gctatgcgac ctaatgacag ggaagctcga      3840
     agttctgtcg gcctgggcgc aaaagaacgg gctgggagtc aacccgtcca agacagagct      3900
     cgtgctgttc accaggaagt acaaaatacc taacctaaga cttccgaagc tcctaggaga      3960
     aacactagtt cttagtgata gtgcgaagta cctaggtatc acactagaca ggaaactgga      4020
     ctggaagctg aacaccgctg ataggactaa gaaagcggca atagcactct atacctgccg      4080
     caaggcggta ggcctgaaat ggggaatgtc cccgaagatg gtcagatggt tatacacagc      4140
     gatcatcaga ccaattctat tctatggtgt tgttgtctgg tggcccgccc tagacaactc      4200
     ctcatgcagg gaaaagttca ggaagacgca gcgcatggcg gaagtctgta tgacaggcag      4260
     tctacgcact acgcctagtg atgccctaga cactatactt gacctactac cagttgaact      4320
     gatgggggta aagacagcca ctctggcggc aataagactg cgggaggcga acctatggag      4380
     caaaaatagt ttcggtcata ccagactgga cctacancat ttcatgcctg aggggggtac      4440
     ggattactgc gtgcccgtcg accaacccac cactaactac aaagtcttaa tcccctcgag      4500
     ggaggaatgg gangcccgga taccgggacc ggagggctcc attcatatct atacagatgg      4560
     atcaaaactt aacggccagg tgggaggcgg ttacttttgc gagcatctga gcctaaagga      4620
     gtccttcaga ctccccgacc actgcagtgt tttccaggct gaagtagtag ccattaagga      4680
     agcacttgaa tccccagctc taaggggcaa tcggggtaca atatgtatct tctcagatag      4740
     tcaagcagcg ctcaaggcac ttgacggatt ctcgtccaac tccaggacag tcaatgactg      4800
     tcgcagatct ctcaacgaga tggctgaaca gcntgacatc tacctcatct gggttcccgg      4860
     tcacagggac cacgagggaa actgtgctgc agatgaacta gctagggcag ggactaccaa      4920
     ccctctccta ccggagaaag aacttgtagg catacccttg gctacttgca ggctaaagtg      4980
     cagggagttt ttcgacctgg cagccaatag gaaatggagt aatctccaga cctgtaaaac      5040
     atcacgtttg atctggccga cacgctctca gaaaagatcg gcgagactca ttgctctgac      5100
     tagaccggaa tgcagcctag cgattggggc aatcactggg cactggctga taggcgagca      5160
     cgcggccagg cttgcagtcc cccacaatga tttctgcagg agctgcaggg atgaagagga      5220
     ggtagaatcg gtatcgcacc tcttatgcca ctgcccggca ctcggacgca gcaggctcaa      5280
     acacttcggg tccgaagaac tctcggacct tagcgatctc tcagagatct ctccacgcgg      5340
     actggtcgcc ttcataaaaa aagcaggctg ggaccatggg ccgccatagg aagtctaggc      5400
     atttatacgc accctggtag acaggaaggg ggggggtagc atctcggtga aacccttgct      5460
     ccagcggcag cacaaggagc ccttgcggct caagtggaag cgagggggta ttctatgacc      5520
     cccttgcatc accgccctaa cctaacctaa cc                                    5552
//
ID   LOA-1_DAzt  repbase;    DNA;    INV; 5500 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5500
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 876-876 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           482..1828
FT                 /product="LOA-1_DAzt_1p"
FT                 /note="DUF4780."
FT                 /translation="MNKIQQNKNKNESGAPQLPTGSNPTQGKASAHRPGPT
FT                 RDLAGKTCAAEDARANLKGSHPNSGVGGKSPPKTDALVERLCNPAAALPAG
FT                 KATEGELPSTSAQAKIYTYADRRSAGNILRRQNASTMSSPTDQWRKKVEWA
FT                 SKVLPNFDKEAPKRVAPSKIAAPQTKRQRSQETPGPAPKRSRVLPNVSFAQ
FT                 IAKERTLIGVLDKGSVDSKIPRNQWKWVEAALADRCFELLDKQPGPPPVCK
FT                 DMGWYQGCIKIIACEDERSVQLYKAAVAQVGEVYPGAKLVAVDWSEVPSRP
FT                 RARVWVPATIKEPERILKMLQRCNPELPTSDWRVVKVEAAQGPMHQAVLIL
FT                 NKESLAPIEAKNGELNFGFSAVSIRIYKSDAAAEARPVDNPVEQDVASEIE
FT                 APDDEPESAHDGYSSDTVLMREFEAMCRDDSDADNTVVENPVDVSKTPSDK
FT                 SPPL"
FT   CDS           1599..5375
FT                 /product="LOA-1_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MQRPRHALSTTQSSRTLPRRSKHPTTSLSQPMTATPL
FT                 IRCLCGSSRRCVATTRTPTTQWWRILSMSLRLLQINLHHCKAASAALILRL
FT                 VVSGADVVLIQEPWVVGDKVCGLATKEYKLIVAQKEGKIRTCILARKHLNI
FT                 FLLHNYSNGDNTAASLELQGSNIRLMSSYMAHEESDPPGDLVRKITTDSER
FT                 SDIGLVIGCDANSHHTQWGSSDTNVRGESLFSFILNSNLLICNRGNDPTFI
FT                 IKNRQEVIDLTLVSHKLTDTVKNWKVLGDHSFSDHRYIETTLSLETPKPTV
FT                 FANPRKANWEKYATVMEELLPSKAPICPNTEHDLNHLVNRFTKACNTAFTA
FT                 ACPLNQRMGKKKPPWWSKQIDILRKSCRSLFNRAKSANEEDHWADYKNSLA
FT                 LYKKKIRQAKRASWQSFCSEIEETSEAARLRKILSKMTPSVGYLKSSDGTW
FT                 TNSSEESLHILLDTHFPGCSTNEPTRIPCEGPITSLEHIFSKRNISWAINS
FT                 FNSFKSPGPDQIMPAHLQKAGDTAINWLQSIFKKILAVGSIPHAWLKAKIV
FT                 FIPKAGKASHSTPKDFRPISLSSFLLKTFERLVGLQLRTTIDPQLLSGAQH
FT                 AYRKGKSTETALHKVVSGIEKSLHLKEYSLIAFLDIEGAFNNVIPGAITEA
FT                 LTDLGVDRHLVMLIDQLLTCRTVTSSMGSSTQTRYVSRGTPQGGVLSPLLW
FT                 NIAVNKILCDLEGGGCGVVAYADDVALIFSGKYPQTLCDLMTAKLARLSRW
FT                 AELRGLGVNPSKTELVLFTRKYRIPSLNPPILNGCKLSFSDSASYLGVVID
FT                 KKLNWNLNIKDRVKKATIALYTCKKAVGLKWGMNPSIVNWLYQAVVRPIIL
FT                 YGVTVWWPALSKRTITKQLDKVQRTAALCISGALRSTPNDALDAILCLPSL
FT                 ALAGKERAQMAAIRLRDSDQWASQHTGHSSILNNSSVPTRTDYCVPREYTD
FT                 TPFDAIIPHRDEWSEGHPGPEGALDIFTDGSKLNDRVGGGVYSEQLNIRHS
FT                 FRLPDHCSVFQAEVIAIKEALNCLQVTTDMVNRVNIYSDSQAAIKSLNAIS
FT                 ANSATVADCRKSLHEMAQQFVISLIWVPGHRDIEGNCIADELARIGTTIPL
FT                 LQDKEDTRMPMATCRLIIKDIYKKLIDNKWQSVPRCRITRLTWPTIDRKRT
FT                 SELCKLGRRGCSVVTRSLTGHWLIGTHANRLGAPYNDFCRSCRDEEEEETV
FT                 EHLFCSCPALSRRRLQHLGTPFILDISEMSTICPRKIANFVRAAGWDNC"
XX
SQ   Sequence 5500 BP; 1547 A; 1457 C; 1404 G; 1092 T; 0 other;
     tctggtctga cgagcatgtg agatggctcg gagggggcct agctgaggcc accggacggg        60
     tcgcaggttg cggatagcga atgacctact cttgagggta ggccagctgc gaataaacgg       120
     taatccttag ggaaagcacc gaaataagca gtcccggaca gccagcgggt gttcgcgaag       180
     cagcaacact gacgatgcgc ttgtggtgcc gcctcgtata agtagctcac acactcctac       240
     tccccacaca atacctaccc acatcccatc ctccacactc atctcacacc gggctgggct       300
     aaggtgtcat tcgacccgtg ccgagagtca gcctggctgg gggcccggtt caaaaactag       360
     cccagtctcg aacggagagc tcagggactt ggcagccccc tgttctaatg atgccttatc       420
     cgggcaacgt gaatctctgc ccggacggac cgccccttct ttgcaaatcg tgggatcaaa       480
     aatgaataaa atacaacaaa acaaaaacaa aaacgagtct ggcgctcctc aactgccaac       540
     agggagtaat cccacacagg gaaaggcatc ggcccatagg cctggcccga cccgcgattt       600
     agcaggtaaa acctgtgcgg cggaagacgc tagggcgaac ctcaaggggt cccatcccaa       660
     ttctggggtg ggtggcaaat cgcctcccaa aaccgatgcc ttggtggagc ggctctgcaa       720
     tcctgcggct gccctacctg ctggtaaggc tacggaaggc gagttgccat cgactagcgc       780
     ccaagccaaa atatacacgt atgccgatag gaggagtgct ggcaacatac tccgtcggca       840
     aaacgcgagc acgatgtcca gcccgaccga ccaatggcgg aagaaggtcg aatgggcatc       900
     caaggtgctg cccaacttcg acaaagaggc accaaaaagg gttgccccgt cgaagatcgc       960
     agctcctcaa acaaaaaggc agcgctcaca ggagactcct ggaccggctc cgaagcgctc      1020
     cagagtgctg ccgaacgtgt cgttcgcgca gattgccaag gagaggacgc tgatcggcgt      1080
     cctggataaa ggcagcgtgg actctaagat ccccaggaac cagtggaagt gggtggaagc      1140
     ggcactggcc gaccgctgct tcgagctact ggataagcaa cccggccccc ctccggtctg      1200
     taaagacatg gggtggtacc aggggtgtat aaaaataata gcctgcgaag acgagcgctc      1260
     cgtccagctg tacaaagcag cggtggcgca agtcggtgag gtctacccag gggcgaagct      1320
     cgtcgcagtc gactggagcg aggtacccag taggcctagg gcgagagttt gggtgcccgc      1380
     caccataaag gagccggagc gcatcctgaa gatgctgcag cgatgcaacc cggaactacc      1440
     cacatccgac tggagggtag tcaaggtcga agcggcgcaa ggcccgatgc accaggcggt      1500
     gctaatcctt aataaggaat ccttggcccc aatcgaggct aagaacggtg agctgaactt      1560
     tggattcagc gcggtaagca tcaggatcta caagtcggat gcagcggccg aggcacgccc      1620
     tgtcgacaac ccagtcgagc aggacgttgc ctcggagatc gaagcacccg acgacgagcc      1680
     tgagtcagcc catgacggct actcctctga tacggtgctt atgcgggagt tcgaggcgat      1740
     gtgtcgcgac gactcggacg ccgacaacac agtggtggag aatcctgtcg atgtctctaa      1800
     gactccttca gataaatctc caccactgta aagcagcatc tgctgccctt attctccgct      1860
     tggtagtgag cggagcggat gtagtcctaa tccaagagcc ttgggtagta ggagacaagg      1920
     tctgtggatt agcgacgaag gagtacaagc ttattgtagc tcaaaaagaa ggtaaaatcc      1980
     gtacctgtat tctagcaaga aagcacttaa atatctttct gctccataac tatagcaatg      2040
     gtgacaacac agcagcaagc cttgagctac aaggttctaa cataaggctg atgtcgtcct      2100
     acatggcaca tgaggaaagc gaccctcccg gtgacctagt tcgcaagatc accacggaca      2160
     gcgaaaggtc ggatataggc cttgtaatag gctgcgacgc caactcccat cacacccaat      2220
     gggggagttc ggatacgaat gtaaggggtg agtcattatt cagcttcatc ctaaactcta      2280
     atcttcttat ctgcaatcgg ggcaatgatc ctacgtttat aattaagaat agacaagagg      2340
     taattgacct gacattagtg tctcacaaac tgacagacac agtaaagaac tggaaagttc      2400
     tgggggacca ttccttttcg gaccacaggt acatcgagac cacactatct ctcgagaccc      2460
     caaaacccac tgtctttgct aacccaagga aggcgaactg ggaaaaatat gccacagtaa      2520
     tggaggaact acttccctcc aaggcaccaa tctgcccgaa cacagagcac gatctaaacc      2580
     atctagtgaa caggtttact aaagcatgca acaccgcctt cacggctgcg tgcccactca      2640
     accaacgcat ggggaaaaag aaacccccat ggtggtcaaa acagatagat atccttcgga      2700
     aaagctgcag gtccctcttc aacagggcca aaagcgcaaa cgaggaagat cactgggcag      2760
     actacaaaaa tagtctggcc ctatataaga aaaaaatcag acaggcaaaa agggcctcgt      2820
     ggcaaagttt ttgttctgaa atcgaggaaa cgtcagaagc agcaagactg cgcaagatcc      2880
     tctccaaaat gaccccatcg gtgggatacc taaagagtag cgacggtacg tggactaact      2940
     cgagtgagga gtccctacac attcttctcg acactcattt tccaggatgc tccaccaatg      3000
     agccgactcg catcccttgt gagggtccga tcacctcatt ggagcatatc ttctcaaaac      3060
     ggaacataag ctgggcaatt aacagtttca attcgttcaa atcccctggt ccggaccaga      3120
     tcatgccggc ccatttacag aaagccggtg acacggccat caactggcta caaagtatct      3180
     tcaagaagat actggcagtg gggagtatac cacacgcttg gcttaaggca aaaatagtct      3240
     ttatccctaa agcaggtaaa gcttcgcact cgacaccaaa ggactttaga ccgatcagtc      3300
     tatcatcctt ccttctcaaa accttcgaga gactagtcgg gctacaattg aggacaacta      3360
     tagatcctca actgttgtca ggagcacagc acgcctaccg gaaaggaaaa tccacggaaa      3420
     cggcacttca caaagtagtt tcggggatag agaaatctct acacctcaaa gaatactctc      3480
     taatagcttt tctagatatc gagggagctt tcaacaacgt cataccaggt gccatcacgg      3540
     aagcgctgac tgaccttggg gtggaccgtc acttggtgat gctcattgat caattgctca      3600
     catgcaggac ggtgacatca tcgatgggat cgtccaccca gacaaggtat gtcagtagag      3660
     gcacaccgca aggtggcgtc ctatcccccc ttttatggaa catagcagtc aacaagattc      3720
     tatgcgacct ggaagggggg ggttgcggag ttgtggcata cgcggatgac gtggcactta      3780
     tcttctcggg caaataccct caaacactct gcgacctaat gaccgcaaag ctcgcgagac      3840
     tgtcaagatg ggcagaattg cgaggtcttg gagtaaatcc ctcaaagaca gaacttgtgc      3900
     tattcacaag gaaatacagg attccgtctc taaacccccc aatattaaat ggatgcaagc      3960
     tttcctttag cgacagtgcc agctacctag gggtggtaat tgacaaaaag ctaaactgga      4020
     acctaaacat caaagacaga gtgaagaagg ccacgatagc cctctacact tgcaaaaaag      4080
     ctgttggctt gaaatggggc atgaacccaa gtatagtcaa ttggttatat caagctgtag      4140
     ttaggccaat aatactttat ggagttacag tatggtggcc ggccttatct aaaaggacga      4200
     tcactaaaca gctcgataaa gtacaacgaa cagccgccct ctgcatcagt ggagctcttc      4260
     gctccacccc aaatgatgcg ctggatgcca ttctatgcct cccaagcctt gcccttgcag      4320
     ggaaggaaag ggcacagatg gcagcaattc gtcttagaga ctccgaccaa tgggcatcac      4380
     agcacacagg tcactcctca atactaaaca acagttccgt ccccacaagg acggattact      4440
     gtgtcccaag ggaatataca gacaccccgt tcgatgcaat tatcccccac agagacgagt      4500
     ggagtgaggg acatccaggc ccagaagggg ccctagacat cttcacagat ggttcaaagc      4560
     tgaacgacag ggtcggagga ggcgtatact ctgaacagct aaacatcagg cattccttta      4620
     gactccctga tcactgcagc gtcttccaag cggaggtcat tgcaatcaag gaagccctaa      4680
     actgccttca ggtgactacc gacatggtaa atcgcgtaaa catctacagt gatagccaag      4740
     cagcaatcaa atcgcttaat gcgatctctg ctaactcggc cacggttgca gattgccgca      4800
     aatctctcca cgagatggct cagcaatttg ttatcagcct tatatgggtc ccgggtcacc      4860
     gggacatcga aggcaactgt atagcagacg agctggccag aattggcact acaatccccc      4920
     ttctccaaga caaggaggat actcgtatgc cgatggccac ttgtaggctc ataataaagg      4980
     atatatataa gaaattaata gacaacaaat ggcaatcagt accacgttgt cgaattactc      5040
     ggctgacatg gccaaccata gataggaagc gcacctcgga gctatgcaag ctcggcagac      5100
     gagggtgcag cgtagtcacg cgctctctaa cggggcactg gctaataggt acccacgcta      5160
     atagactggg agccccatac aacgactttt gtcgtagctg cagagatgag gaagaggagg      5220
     aaacggtgga acacttgttc tgctcgtgcc ctgctctcag cagaagaagg ctgcagcacc      5280
     tgggtacgcc cttcatatta gacatctctg aaatgtccac catatgtccc aggaagatag      5340
     ctaactttgt aagagccgca ggctgggaca actgttgagt tctaggtctc acaatgcgag      5400
     aagggaaaga ttccccgcgg taccacaacg ggccggtaac ggcctaagtg tgccaggctc      5460
     ccggtgggtc tggcagccgc tgtaacctaa cctaacctaa                            5500
//
ID   LOA-1_DBi   repbase;    DNA;    INV; 1228 BP.
XX
AC   .
XX
DT   11-JAN-2012 (Rel. 17.06, Created)
DT   11-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LOA-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1228
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 938-938 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated. Only 3 sequences and
CC   likely segmentally duplicated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1228 BP; 419 A; 278 C; 234 G; 297 T; 0 other;
     gacatggaaa aatcgactga tgccgcaaga cttacaaaag tactctctct gggctatttt        60
     cagaaagcaa atggatcatg gtcagactct agtaaagagt ccttggacct acttctagac       120
     gctcactttc cagggatcta acaaagaggt catcctccag aaacaaatgc cggagaagga       180
     atttaacttg attttttatt ttcagaccgc aatattaaat ggtacatata aatacccggg       240
     accgtatggg ataacaccgg cacatatcca acagcaggac agctagctgg ctgagaaaaa       300
     tcttgtattc cattctggca gtaggagaac taccaaccgc atggcaggaa acaaaagtgg       360
     ttttctatat aatttataat ttttaatgat aactccacaa aaaagggaac ttgatttatt       420
     gacaaataga tacaagatcc caaaacttaa cccaccgatc tgagccagcc agatacttgg       480
     ggttagcact agggataccg ggtaatggaa agccgaattt tatgattacg ctaagattct       540
     ccagcatgct aaatcgatac cgaagaaaac ggatctatgc aaaactcttg aatacagtca       600
     cttaaccttc gaggccctga ttccaggtag agacaattga gaacagggtc gactgggctc       660
     gacggacgca atttgtttct atacagatgg ctttaaatta aaagggattt agacaaaagc       720
     caagcactat tcgacaaaca ccaactttcg agcataccag accgcgcagg tccctgcacg       780
     agatggttag tcagtttact atcagcctta tatcggttcc tggtcaccga aacatcgtaa       840
     gctatataac taaccaacac tcattagcga aacgcaccac agtgccgtca ccagacatgg       900
     cctgtgaaac agtaaaaaac ttcggaaata ctcaaactca gctgcacaga gttcggtacg       960
     ccatttaggc ttaaagcccc aaaaaattac ttctgtagaa atttcaagga taaaagaaca      1020
     ccttctatgc ttctgcccag ccctatgcag acctacaccg aagcacttag aaatcccctt      1080
     catcaacgat ttcaccgaaa tatcggagat tagccataaa aacataaata atgttaaaga      1140
     tagaggaacc aagaaatcat gcggtataac aatggaggtc taattgtgtc aggccatatt      1200
     cttaatgccg ttctaaccta acctatcc                                         1228
//
ID   Loa-1_DBp   repbase;    DNA;    INV; 5398 BP.
XX
AC   .
XX
DT   18-DEC-2011 (Rel. 17.05, Created)
DT   18-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5398
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 723-723 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           334..1818
FT                 /product="Loa-1_DBp_1p"
FT                 /translation="MMDEPLPAYSWDQNMNTTIPNKNLSGERNSLKKSGNG
FT                 VSDPSNSKALKSQGVAEMEKPPTEGQHLEAGRAGAEEVAKASSSKAGLAMG
FT                 PPNGVERKTPGSTSKPTGGAPKANPGPGASHSTQRKGSYKDRRRAAFILMR
FT                 ADPSAEANPDQAEIIKWAREILPDFXPEKAGVRLDPKKRAGSDPAKEIAQS
FT                 AKRQRSTEGEAPQAKKRKAQPQPSNRSFAEVTKGRTLIGVLDKGSKDGLIP
FT                 KDLWRRVVNELHGRFVEEMLRSGGPPPECEDAGWYQGSVKVIACQDARSVE
FT                 TYKRMVASLGEVYPGAKLVAVDWEEIPSKPRARVWLTEKPADPKTILTMLR
FT                 MCNPTLPTADWRVAKVEEAVGLRRQVVLTLNEETVKALERSEHRLKYGFEH
FT                 VTVRIYKSDAKAKPGGIGLEADTQEPDLEEPTEEGHPEGMSDEEEDIPEGY
FT                 TSEESDLARALSGVGMEEDSLLSSETEAEVTVVENCKDVPDNLADKPPPQ"
FT   CDS           1781..5251
FT                 /product="Loa-1_DBp_2p"
FT                 /translation="MSLTILQINLHHSKAASAALLLHLAESGADVALIQEP
FT                 WILGDRILGLGASEYRLCKADTTGKRRACVLAKKNLNLFLLPNFSNEDHVA
FT                 AAIESPNGPLRVCSAYMGHDQEALPPHPLLKQLVEDSRKHKIDLIIGCDAN
FT                 AHHHQWGSTDTNERGESIFDFILGSNLLVGNRGTEPTFIVKNRREVLDVTL
FT                 YSDSLADRIVRWGVLEKHSFSDHRYIELVVNFENFNRLTVRNPRKANWELY
FT                 RKKLESSLGKPPTRDVDSREALDAMVDTLTAACARAFNKACPKSRSGNSKS
FT                 KKPPWWSQTLAPFKTKARKAFNFASKTNSETAXETYKAKLRTSSSKETLEA
FT                 LTEAHFPGCSLEXTTLETQRQGDSPSLPNQLEYLLSDRYLSWAINSFKPFK
FT                 SPGPDGIVPAQLIKAGPNLRSWVKKAFSAIFRIGIVPAMWLRTKVVFIPKA
FT                 GKPSHCTPKDFRPISLSSFLLKTMERLISLHINLTINPDDISGSQHAYRKG
FT                 RSTETALHEITTFVEKALSDKEYALIAFLDIEGAFNNILPSSIINALTGLG
FT                 IDNQSVRLIEQILVNRTVEASLGGESIHRYVRRGTPQGGVLSPLLWNVAVN
FT                 SLLRSLEGGGCKVIAYADDVAIAFSGKFPQTLCDRMTDKLRVLSTWAVRNG
FT                 LGVNPSKTELVLFTRKYKIPNLRLPKLSGETLSLSGSAKYLGITLDRKLDW
FT                 KSNTMDRANKATIALYTCRKAIGLKWGMSPKIVRWLYTAVIRPILFYGVVV
FT                 WWPALTNSTIREKLRKTQRMAEVCITGSLRTTPTDALDFILDLLPVEIMGV
FT                 KIATLSAIRLRETGIWKWTDYGHTKLDLHHCTPTGATDYCVPVDHPTLKYK
FT                 VSIPTREEWATQIPGPAGSLHIYTDGSKLNGQVGGGFHCERLCLNESFRLP
FT                 DHCSVFQAEVIAIGEALRSPALTGNQETICIFSDSQAALKALDGFSSNSRT
FT                 VNDCRRSLNEMAEQYDIHLIWVPGHRDHEGNCAADELARAGTTNPLLPEKE
FT                 PVGIPLATCRLKCRDHFDRASLRKWRNLQNCRNSRMIWPIRSRKRSMMLIA
FT                 LNRQDCSLAVKAITGHWLIGAHAARLAVPHYDYCRSCGDVEEEETVAHLLC
FT                 QCPALGRSRLKFLGAAILTDLTDLAEIAPRRLVAFIRKSGWDREPPQEG"
XX
SQ   Sequence 5398 BP; 1500 A; 1420 C; 1480 G; 992 T; 6 other;
     ggccgtcagc caacgggtac aacaggggga cctacacgca agcaattgcg tgccgtaact        60
     gtgtacaccg ctggtagtgc gactatactc tccacgtgag ggcggctggt aacaggtccc       120
     ggtaaggtca tgtctctgcc gaggatgctg gctaatggta gtcgggcggg gagaagaaca       180
     ctcccttcct taaatcaccc caatccaagg tggaacagca tatgccgaag gatgcgtgtc       240
     cgaggggggg ctcggacgct aatatgcgaa ctctggggga ccggccgaac ctcccagttt       300
     taaccaggct tatcgtgaca agcgggctat gtcatgatgg acgaacccct tcccgcctac       360
     tcgtgggacc aaaatatgaa cactaccata ccaaacaaaa acctaagtgg agaacggaac       420
     tccctaaaaa agtccggaaa tggggtcagt gacccgtcaa actccaaggc cctcaaaagc       480
     caaggagttg ctgagatgga gaagcccccc acagaggggc aacatctgga ggcgggacgc       540
     gccggtgcgg aggaggttgc caaggcttct tcttccaaag cggggctagc catgggacca       600
     ccgaacggcg tggagaggaa gaccccaggg tcaacctcta aaccaaccgg cggggcccct       660
     aaggcgaacc ctggtccggg agcgtctcac tcgacgcagc gtaaaggctc ttacaaagat       720
     aggagaagag cagccttcat tctgatgagg gcggacccat cggccgaagc caacccggac       780
     caggccgaga tcattaagtg ggcaagggag atcctgcccg actttaancc ggaaaaggcg       840
     ggngtgaggc tggatccgaa aaaacgtgct gggtcagacc ctgccaagga gatcgcgcaa       900
     agcgcgaaaa ggcagaggtc cacggaggga gaagcccccc aggctaagaa gaggaaggcc       960
     cagccgcagc cgtccaaccg ctcgttcgcc gaagtgacga agggaagaac cctaattgga      1020
     gtcctggaca agggctccaa ggatgggctc atccccaagg acctttggcg acgagtggta      1080
     aacgagttgc atgggcgctt cgtggaggag atgctgcgaa gcggaggacc cccaccagaa      1140
     tgcgaagacg caggatggta tcagggtagc gtcaaggtaa ttgcctgcca agacgcgcga      1200
     tcggtagaga cctacaagcg tatggtagca tcgcttggag aggtctaccc tggagctaag      1260
     ctggtggcgg ttgactggga ggagatccca agcaaaccga gggcgcgagt gtggctcaca      1320
     gaaaagccag ccgaccctaa gaccatccta acnatgctta ggatgtgcaa tccgacgctt      1380
     cccacggcgg actggagagt cgccaaggtc gaggaggcgg tgggactgcg gaggcaggtc      1440
     gtcctcacac tcaacgagga gaccgtaaaa gccctggaaa ggtcggagca ccggctgaag      1500
     tacggattcg aacacgtgac ggtccgtatc tacaaatccg atgcgaaggc caagccagga      1560
     ggtatcgggc tggaggcaga cacgcaagag ccagacttgg aggagccgac cgaagagggg      1620
     cacccggaag gaatgtcgga tgaggaggag gacatcccgg aagggtacac ctcggaggaa      1680
     agcgacttgg caagggcact tagtggagtc ggaatggagg aggactctct gctgagctcc      1740
     gagacggagg cagaagttac tgtggtggag aattgtaagg atgtccctga caatcttgca      1800
     gataaacctc caccacagta aagcggcgtc agctgccctc ctactccacc tcgccgagag      1860
     tggagctgat gtggccctca tccaggaacc ctggatcctt ggagacagga ttcttgggtt      1920
     gggggcgtcg gagtataggc tctgcaaagc cgatacaaca ggtaaaaggc gagcctgcgt      1980
     cctcgcaaaa aagaacctta acctcttttt gctacccaat ttcagcaatg aagaccacgt      2040
     agccgcagcc atagagagcc caaatggccc tctaagggta tgttcggcgt atatgggcca      2100
     cgaccaggag gccctccccc cgcacccgct actcaaacag ctggtggaag acagcaggaa      2160
     gcacaagatc gacctgatca taggttgcga tgctaacgcc catcatcatc agtggggaag      2220
     cactgacacg aacgagaggg gtgagtcaat cttcgatttt atcctaggct ccaatcttct      2280
     ggtgggtaac aggggtacag aacccacctt catagtcaag aacagaaggg aagtacttga      2340
     cgtcactctt tactctgact ccctagcaga caggattgtt agatggggag tcctagagaa      2400
     acactccttc tcggaccatc gatacataga attagtggtc aattttgaga actttaatcg      2460
     actaacggta cgcaacccga ggaaagcgaa ctgggagtta tacaggaaaa aactagaaag      2520
     ttccttgggg aaacctccaa caagggacgt tgacagtagg gaagccctgg atgccatggt      2580
     ggacacgctt acggcagcgt gcgccagggc attcaacaaa gcttgtccca aaagcagatc      2640
     gggcaatagc aagtcaaaga aaccaccatg gtggtcgcaa acacttgcgc cctttaagac      2700
     caaggcccgc aaggccttta atttcgccag caagacaaac tcggagacag cctnggagac      2760
     gtataaagcg aaacttagga catcgtccag caaagaaacc ctagaggctc tcacggaggc      2820
     acatttcccg ggatgctctc tagaaganac aaccctggaa acgcagagac agggggatag      2880
     cccctccctc cctaaccaac ttgaatacct attgagtgat aggtatctca gctgggcgat      2940
     aaacagcttc aagcccttca aatccccggg cccagatggc attgtcccgg ctcaactaat      3000
     taaagccggt cccaatctga ggtcttgggt caagaaagct ttctcagcaa ttttcagaat      3060
     aggcatcgta cccgcaatgt ggttgcggac gaaagtcgta tttataccca aggcgggaaa      3120
     accatcgcac tgcaccccca aggacttcag accaataagc ctgtcgtcct tccttctcaa      3180
     gacaatggag agactaatca gcctccatat taatcttact atcaacccag atgatatctc      3240
     gggatcacag catgcgtata ggaagggccg atccacggaa acggcactcc acgagatcac      3300
     tactttcgtc gaaaaggcac ttagtgacaa ggaatacgca ctcattgctt ttctagacat      3360
     agaaggtgcg ttcaacaaca tcctaccaag ctcgataatc aatgcgctga cgggactagg      3420
     aatagacaat caatccgtac gccttataga gcagatcctg gtaaacagga ctgttgaggc      3480
     gtcactagga ggagaatcta ttcatagata cgtcagaaga ggcactccgc aaggaggcgt      3540
     actctcaccc ctactgtgga acgtggcggt taatagccta ctgcgatccc tagaaggtgg      3600
     tggttgcaaa gttatcgctt acgcggatga tgtcgcaatt gccttctctg gaaaatttcc      3660
     ccagactcta tgtgaccgca tgacggacaa acttagggtc ctctcaacgt gggcagttag      3720
     aaatggacta ggtgtaaacc cgtccaaaac cgagctcgtc ctcttcacca ggaagtacaa      3780
     aataccaaac ttaaggcttc caaaactatc aggagaaaca ctctccctta gcggtagcgc      3840
     caagtaccta gggattacgc tagacaggaa actggactgg aagtcaaaca ctatggatag      3900
     agctaacaag gcaacaatcg cgctctatac ntgcagaaaa gccattggcc ttaaatgggg      3960
     aatgtcccca aaaatagtaa gatggcttta cacagcggtc ataagaccca tccttttcta      4020
     cggggtggtg gtctggtggc ctgctctcac aaactccaca attagagaga aacttaggaa      4080
     aacgcaaagg atggcggagg tctgtatcac aggcagccta cgtaccacac cgacggacgc      4140
     cctagacttc atactcgacc tattaccggt agagataatg ggggtcaaga tagccacgct      4200
     atcggcaatc aggctacgcg agacgggcat atggaaatgg accgactacg gacataccaa      4260
     gttggatcta caccactgca cgccaacggg ggctacagac tactgcgtac ctgtcgatca      4320
     tcccacctta aaatacaagg tctccattcc aacaagggag gaatgggcca cacaaatccc      4380
     gggaccagcc ggttccctcc atatctacac agacggttca aaattgaatg gccaggtggg      4440
     aggcggtttc cattgcgaac ggctgtgtct aaatgagtcc ttcagactcc ccgaccactg      4500
     tagtgtgttc caagcagaag taatagctat cggagaagca ctcagatccc cagcacttac      4560
     tggcaatcaa gaaacaatct gtatcttctc agacagtcag gcggcactca aagcccttga      4620
     cggattctca tccaactcca ggacagtgaa tgactgtcgc agatctctta acgagatggc      4680
     agagcagtat gacatccacc tcatatgggt gcccggacat agggaccacg agggtaattg      4740
     cgccgccgac gaactagcaa gagcaggtac taccaatcct ctcctaccgg agaaggaacc      4800
     agtaggtatc cccttagcta cgtgtaggct aaaatgcagg gatcactttg accgcgcatc      4860
     actgaggaaa tggagaaatc tccaaaactg caggaactca cgcatgatat ggcccatccg      4920
     ctctaggaag aggtcaatga tgcttatcgc ccttaatagg caggactgca gtctggcggt      4980
     caaggccatt acgggacact ggttaatagg agcacacgcg gctagactag cggtgccaca      5040
     ttatgactac tgcaggagct gtggggacgt agaagaggaa gagacagtcg cacacctcct      5100
     gtgtcaatgc cctgcgctgg ggcgcagccg actcaaattc ttgggcgcag caatactcac      5160
     ggacctaaca gacctcgcgg agatcgctcc acgcagactc gtagctttca tccgtaaatc      5220
     tggatgggac cgcgagccgc cgcaggaagg atagaacact cttgggcaca taagtagata      5280
     ggaagggaga ggtcctcttg taggaccctt gcctgtgcgg taccacaagg agccccagcg      5340
     gctcaagtgg atggggggtc agtcaccggc cccgcatcgc cgcctcaacc taacctaa        5398
//
ID   Loa-1_DEl   repbase;    DNA;    INV; 5696 BP.
XX
AC   .
XX
DT   20-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5696
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 573-573 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           459..1991
FT                 /product="Loa-1_DEl_1p"
FT                 /translation="MKKNKXIKIPQDIPATGVARHFEERSLDGDRPQAAAH
FT                 PPRTSPAAQARRPAPQSFPARERGVPAGATLPARPPLASDRPTSIRQLKKQ
FT                 DALPALGQPGGLDDPNRRGLPGSKVKWYLRYLMQGMTPEEALKKAKEPREQ
FT                 PALGAAPAGKRLNTSRTPPTDTPKRSRHGTGASETSSRVPGQEGPSTSAAA
FT                 AEKAKVQARKIPSQPRQNQKPTTAGGRPSSSAPPVIGPRPTYAEAAKKATL
FT                 IRVAILPEGFPAASLTAEELSGLQESVMDEMLTSAWSGPVVFRGIHFRVGY
FT                 LIIDCLDEGSAEWLKIAVPQLRTWKGVPLETRTGADIPAAYNATLFCPRSS
FT                 DRTNEEILAFIGFQNRVETDAWKVISRKNDGAGALLVVGMDQTGRDEIVER
FT                 DHKLNFRFGHVTVSGLKKTKKAPEETPNDGICKAVEDTLEPLNVEPKSQSG
FT                 EQDGQSITSMDIGDDQGDGHPMSSQELAQELLLDDSCEEAEVTVIDGGGET
FT                 CSLSSPDITEHQTSE"
FT   CDS           1994..5620
FT                 /product="Loa-1_DEl_2p"
FT                 /translation="MAATSSTRLAQVNIHRAKAASAVLARMFTSQHLGLAL
FT                 VQEPWWHHGIKGLYTKDTKVICDPGGSPPRSCIVIRKDINYSIFSEFMSRD
FT                 CVAVTINGTGAAPKLAVASAYFAGEEACPPPGIPGLVDHCRTNKIPLIIGC
FT                 DANAHHVIWGSTDVNNRGEQLLEFILNNNLEICNVGARPTFVTRVREEVLD
FT                 ITLVTNSFKPHIRNWHVSPEESMSDHRTILFEVAFXTKRCNPKRNPRKTNW
FT                 DKFRSTLELNLSNEPSGYPRHPLELDRAVDNLGHEIVNAFEDSCPLGRQKR
FT                 ETDAPWWNASLERLRVTTRKLFNKPKTDRNWELYRQSLTLYNKEIRKAKRK
FT                 NYRNFCEAISNVNEGARLHKAMAKSATDSNLALRKGNNTFTSTDREKLELL
FT                 FDTHFPGSTPTTGNVRRDQHRTPRTVASDWAAAKSIVTPEKLKWAIGTFQP
FT                 FKSPGLDMISPAFLQQGQELLLTRLRRLMVSSLALGYIPSAWCSARVVFIP
FT                 KIGKKDITSPKSFRPISLTSFCLKTLEKLVDYNIRRTALRDCPLQNTQHAY
FT                 RAGRSTDTALYQLCRTLEGAIDSKEIAICAFLDIEGAFDNTSHDAVRAALS
FT                 RRNIDVTTSKWIGNLLESRQATCTLGSDRVTIATSRGCPQGGVLSPLLWSL
FT                 LVDELLSKLAGKGIQCQGYADDIVIIARGKFEATLCDIVQLGLKTTLDWCR
FT                 EVGLNLNPAKTVIVPFTRKYKLQRMRQISLLGTPIETSREVKYLGITLDSK
FT                 LNFASHVQKTLEKCYRALYTCRKIAGKSWGTRPQIIRWLYLMIVRPILTYG
FT                 ALAWGKRAKLTSMQNQLGKLQRLACVCMTGAMRTCPTTALEILMELTPLHC
FT                 VIEIQRKATLLRISTEGTGSGCILNNRDATNLLGEVPLILHPRDEMTAELI
FT                 FEQNFTAHLGNKKDWTTLSEVHPMAKHTIAWYTDGSLTQQGTGLGVVGPRI
FT                 KYHESLGQYTSIFQAEVCAIGRCAELNIQRGYKEKDISILSDSRAAITALH
FT                 SNKITSKLVLEVKSKLNILGSRNRLALRWIPGHKDISGNELADKMAKLGAE
FT                 QPLIGPEPYCGIGRHTIKEYLRKEEGAMRQEHWRNTPGLRQAKTQINNYNK
FT                 KRFKELIQLGKNSLRIVTGLLTGHCRLKSHLGKMGITSSRTCRFCDIEDET
FT                 SKHIIADCPALASIRCKILGTRTLTPELLGRINPLKLLDFIRGSGLISEL"
XX
SQ   Sequence 5696 BP; 1685 A; 1485 C; 1466 G; 1056 T; 4 other;
     ggccttggtc ctcaagaact agtgggatgg ttcgaaggga ggcttagctg aggccaccag        60
     gcgggtcgca ggttgcggat agcgaacgac cttctgggaa ggttagttgc gaataagcgc       120
     aagcaaataa gcaaccccgg acaaacagcg ggtataccga tggaggtata ccgacaagac       180
     gcttgtttgg ccgtcttaac accgtagcct tacacacccc ctccctcaca actacctacc       240
     tccatcctat cccccacatc tcacctcggt gccggactaa ggtgtcattc gacccgtgcc       300
     gatagtcagc ctggctgggg gcccgagtta acaaatagcc cagtcgcaaa cggagggttc       360
     aggcaagtgg cgaccgtctg tcctaactac gccttacccg ggtacggcgg atctctgccc       420
     gggcggacta tatacttctc cgcaactcgt gggaccccat gaagaagaac aaaaanataa       480
     aaatcccgca ggatatccct gcaaccggtg tcgcaagaca cttcgaggaa agatccctcg       540
     acggcgacag accccaggcg gcagcgcacc cgcctaggac ttcaccagca gcccaggcga       600
     gaagacctgc gccgcagtca ttcccagcca gggagcgtgg tgtgccagca ggagctaccc       660
     tgccagcacg cccacctctc gcgtctgata ggccaacctc tatcagacag ctgaagaagc       720
     aggacgctct tccagcccta ggacagcccg gaggactgga cgaccccaac aggcgtggcc       780
     tgccagggtc gaaggtaaag tggtacctga ggtatctcat gcagggcatg acaccggagg       840
     aggccttgaa gaaggcaaag gagccgaggg agcagccggc attgggggca gcaccggctg       900
     gcaaacggct gaacaccagc cgcacaccac caacggacac ccccaagagg tctaggcacg       960
     gcacaggggc tagtgagacg tcctcacggg tccctgggca agaggggcct agcacatcag      1020
     cagcagcggc agaaaaggca aaggtgcagg ccaggaagat accttcccag ccccgccaaa      1080
     accagaagcc gacaaccgct ggaggacgac cctctagctc ggcaccaccg gtcatcggac      1140
     cccgtccgac atacgcggag gctgccaaga aagccacgct catcagggtg gccatactcc      1200
     cggagggttt cccggcggcc agcctgaccg cggaggaact atccgggctc caggagtcgg      1260
     tcatggacga gatgctcacg tcagcgtgga gcggtccggt cgtgttcagg ggaatccact      1320
     tcagggtggg ttacctgatt atcgactgcc tggatgaagg ctcagctgag tggctcaaga      1380
     ttgccgtacc tcagctgcgg acgtggaagg gagtacccct agaaacccgc acgggagcag      1440
     acatcccggc agcttacaac gccacgttgt tctgcccgag gagctcagac cggaccaatg      1500
     aggagatact ggccttcatt ggtttccaaa accgngtcga gacggacgcc tggaaggtca      1560
     tctccaggaa gaacgacgga gctggtgcac tcctggtcgt agggatggac cagaccggaa      1620
     gggatgagat agtggagcgt gaccacaagc tcaacttccg gtttggccac gtcaccgtga      1680
     gcggtctgaa aaagactaag aaagctccgg aagagacgcc caatgacggc atctgcaagg      1740
     ctgtcgagga taccctcgaa ccactgaacg tggagccgaa gtcgcagagt ggggagcagg      1800
     atggacaatc catcaccagc atggacattg gggacgacca aggggatgga caccctatgt      1860
     catcccaaga gctggcccag gagctcctcc tggacgacag ctgcgaagaa gccgaggtta      1920
     ccgtgataga cggtggtgga gagacttgct ctctctcttc accagacatc acggagcacc      1980
     aaacctcgga gtgatggctg caacaagcag cactcggcta gcccaggtaa acatccatcg      2040
     ggccaaagca gcatctgctg tcttggcgag gatgttcacc tcccaacacc tcgggctagc      2100
     ccttgtacag gagccatggt ggcaccatgg cataaaaggc ctgtacacga aggacactaa      2160
     ggtaatatgc gatccaggag gatcacctcc cagatcatgc atcgttataa ggaaagatat      2220
     caattatagt atcttttcag agttcatgag cagagactgc gtcgccgtaa ccatcaacgg      2280
     cacaggagct gcaccgaagc tagcagtggc ctccgcctac tttgccgggg aggaggcctg      2340
     tccaccgcca ggaatacccg ggctngtgga ccactgccgg acgaacaaga tccccctcat      2400
     cataggatgc gatgccaacg cgcatcacgt gatctggggc agcacggatg tcaacaacag      2460
     aggtgagcaa ttactagaat ttattttaaa caataaccta gagatctgta atgtcggcgc      2520
     caggccgaca tttgttacta gggtacggga agaggtgcta gacataactc tagtaaccaa      2580
     ttcatttaaa ccccacatta ggaactggca tgtgtcacca gaagaatcca tgtccgacca      2640
     caggacaatt ttgtttgagg tagccttcaa nacaaaaaga tgtaacccta aaagaaaccc      2700
     cagaaaaaca aactgggaca aattcaggtc aactctagag ctcaatcttt ccaacgaacc      2760
     gtcaggatac cctagacatc ccttggaatt agatagagcg gtagacaacc taggccacga      2820
     gatagtgaat gcctttgaag acagttgtcc tctaggcaga cagaagcggg aaacagacgc      2880
     accatggtgg aatgctagtc ttgaacgact acgagtaacc actcggaagc tcttcaacaa      2940
     accaaaaact gataggaact gggaactata caggcaaagc ctgacgctct acaacaaaga      3000
     gatcaggaaa gccaaacgga aaaactatag gaacttctgt gaggcaataa gtaacgtcaa      3060
     cgagggcgcg agactgcaca aagcaatggc taaaagtgca acggatagta atttagccct      3120
     gaggaaaggg aataacacct tcacctccac ggatcgggag aaattagaat tgctatttga      3180
     cacgcatttc ccggggagta ctcccactac gggaaacgta aggcgtgatc aacatagaac      3240
     ccctaggaca gtagccagtg actgggcagc agccaagtct atagttacgc ccgagaaact      3300
     caaatgggct attggaacct tccaaccatt taaatcaccg ggattagaca tgatctctcc      3360
     agctttctta cagcaggggc aggaactact cctaacccgc ctaagaagac taatggtgag      3420
     cagcctagcc cttgggtaca tcccaagtgc atggtgcagc gctagggtgg tcttcatccc      3480
     caagatcggg aagaaagaca tcaccagccc aaagtccttc agacctatca gcttaacttc      3540
     gttttgtctt aaaacgctgg aaaaactggt agactacaat atcagaagaa cagctctcag      3600
     agactgtccg ctgcaaaaca cacagcatgc atacagagca ggccgttcaa cagacactgc      3660
     actttatcaa ctatgtcgca ccctagaagg ggcaattgac agcaaagaaa tagctatctg      3720
     tgcctttcta gacatagagg gagccttcga caacacatca catgatgcag ttcgagctgc      3780
     cctgtccaga aggaacatag acgttactac gagcaaatgg attggcaacc tacttgaatc      3840
     caggcaagca acatgtacac tgggttcgga tagagtgaca attgcaacca gcagaggctg      3900
     cccgcaagga ggagtactgt cccctttgct atggagtctg ctagtagatg agcttctcag      3960
     caaacttgct ggaaaaggaa tccaatgtca gggatacgcc gatgacatcg tgataatcgc      4020
     caggggcaaa tttgaagcga cactctgcga catcgtccaa ctcggactaa agacaacgct      4080
     agactggtgc agggaggttg gactcaactt aaatcctgct aagacagtca tcgttccctt      4140
     cacaaggaag tacaaactac agagaatgag acaaatctca ctgctaggaa ctcctataga      4200
     aactagccga gaggttaaat atctaggaat caccttggat agtaagctga acttcgcttc      4260
     ccatgtccaa aagacattgg aaaagtgtta cagagcactc tatacctgtc ggaaaattgc      4320
     tgggaaatcc tggggaacca ggcctcagat aatacgatgg ctatacttaa tgatcgtgag      4380
     accaatcctc acttacggag cacttgcatg gggcaaacga gctaagctca ccagcatgca      4440
     aaaccagcta ggaaagctgc aaagacttgc ctgcgtatgc atgacagggg caatgaggac      4500
     ctgtcctaca actgccttag aaattctgat ggagctaaca ccactccact gtgtaattga      4560
     aatccaacgc aaagctacac tcctgagaat aagcactgag ggcacaggta gtggttgcat      4620
     tctaaataac agggatgcga ctaatctgtt aggtgaggtg cccctaatac tccaccctag      4680
     ggatgaaatg acagccgaac taatcttcga gcagaacttc acagcacacc taggcaataa      4740
     gaaagattgg accacattgt ctgaagtgca ccctatggct aaacacacca ttgcatggta      4800
     cacagatgga tccctgacac aacaaggcac gggccttgga gtggtagggc ctcgcataaa      4860
     ataccacgaa tcccttggcc aatataccag catattccag gctgaggtat gtgccattgg      4920
     acgttgtgca gagctcaaca tacagcgtgg atacaaggaa aaggacatat cgatcctttc      4980
     ggacagccga gcagcaatta ctgctttaca tagtaacaaa atcacctcga agctagtcct      5040
     agaggtgaag agtaagctaa atatactggg cagccgaaac aggctggccc tcagatggat      5100
     tccgggacat aaggatatat ccggaaatga acttgccgat aaaatggcaa aactaggagc      5160
     cgaacagccc ctgataggac cagagcccta ctgtggcata gggaggcaca ctataaaaga      5220
     ataccttagg aaagaggaag gcgccatgag gcaagaacac tggaggaata ccccaggcct      5280
     aaggcaagcc aaaactcaaa taaataacta caacaagaag aggttcaagg aacttattca      5340
     actagggaaa aattcactta ggatcgttac cggattacta accgggcact gtagactgaa      5400
     aagtcaccta ggtaagatgg gaataaccag cagtagaact tgcagattct gcgacataga      5460
     ggacgaaacc tctaaacaca tcatcgcaga ctgtccggcg ttagcaagta taagatgtaa      5520
     aatcttagga accagaactc ttacacctga gctcctagga agaatcaacc cactaaaact      5580
     cctcgacttt attcgaggaa gtgggttgat atctgagctg taggctctga atgggggtac      5640
     aatagatctt acaggtcgcg gtacactgaa caccccgata ctaataataa taataa          5696
//
ID   LOA-1_DGri  repbase;    DNA;    INV; 5683 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.07, Created)
DT   10-JUN-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila grimshawi.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_DGri.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5683
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1326-1326 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. It is ~88% identical to LOA from
CC   Drosophila silvestris, but is not fused with Gypsy. Instead, some
CC   copies are inserted into a tandem array of Gypsy-5_DGri-LTR with
CC   12-bp TSDs (ATCTTCGCCAAT).
XX
FH   Key           Location/Qualifiers
FT   CDS           466..1983
FT                 /product="LOA-1_DGri_1p"
FT                 /translation="MKKLQHIKISQDLPAELVARQLEGHIPDGERPLRVVD
FT                 NPPHRAAPATNRRVPRARETPAVRHGRPMAGTLRPPHPTPNSARQGAQRPK
FT                 RKGELLPPRGQPGGLDDPNRRNLCGSRVKWYLRYLQQGLNPDEALKKAKEP
FT                 REEVAAPAPASKRRSSSLTPPVATPKRMCPGVVGAARGSAAAKVLKNNGAG
FT                 NLDLRPSTSRAAATKPSSPTPTEPRLSYADMAKKVKVAVLPVGFPRVMLSH
FT                 GDLSVLEEAIIDEVIASDGDVAVSFVGIHFRVGFLVIECSDETSADWLRIA
FT                 TSRLQSWKGVPLECKVGDDIPSPHCITLFCPRSAARSTESLLALLRNQNRI
FT                 ETDTWKVISRRNEGGGALLVIGIDELSKNVIVEKGHQVFFRYGTIPVSGLK
FT                 KKKTAERPQLAPTGREDVSVGNTTTSDTPAPEQGSPTAQPTDPSEDLADDE
FT                 ELADATLCQAEMLGDDDIPMSSQELEEELQDAAEADVTMTSSGDGDCSRPH
FT                 SPCQLEPPQK"
FT   CDS           1987..5610
FT                 /product="LOA-1_DGri_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSNVINTGLAQVNIHRAKAASAVLARMFTNKHLGLAL
FT                 VQEPWVNDGIKGLFTVDSKVIWDRRDPAPRACIMVRKSINFTILSEFLTRD
FT                 CVPLLVYTKGSAVSMVIVSAYFAGDAPCPPPEIEKLVEYCRKEKMPVLIGC
FT                 DANAHHTIWGSSDINLRGECLTDFIFKYNLELGNVGSTPTFVTRIREEVLD
FT                 ITLINRSLKPHLRDWHVSQEESMSDHRTILFNLKLNTDSSTQSRNPRKTNW
FT                 EGYKSTLGLSLANGLSGNPRRPLELDRAIGYLNKCITKAFEDNCPVGKKYM
FT                 EKDAPWWNDSLERLRVTTRRLFNKAKRDGIWEQYRESLTSYNKEIRKAKRK
FT                 NYRNFCEGIVSTSEGARLHRVLAKRAPDANLALKRGDNSFTSTDLQKLALL
FT                 FETHFPGSTPLQEEAIERESRYRPSTDDWACAKSTVSRERLNWAVGTFQPY
FT                 KSPGMDGISPAFLQTGQEILLSRIRKALVSSLALGYIPGAWRRARVVFIPK
FT                 AGKKDITSPKSFRPISLTSFLLKTLEKLVDYKIRSTLLKQRPLHPTQHAYR
FT                 VGRSTDTALYQLRRTLSAAIDNKEVALCAFLDIEGAFDNTSHDAINATLER
FT                 RGLDHTTSRWIMALLRSRQATASLHDSTVTVLTTKGCPQGGVLSPLLWSLL
FT                 VDELLNRLANSGIQCQGYADDIVIIARGKFEESLCDIVQSGIRITYDWCRE
FT                 VGLNLNPTKTVIVPFTRRHKLQRMRQIWLSGTLLETSREVKYLGVTFDSRL
FT                 NFGTHVQNTILKCSRALYACRSIAGKSWGTSPKILRWLYLMVVRPMLTYGV
FT                 VAWGDRARMITVKKQLQKLQRMACVCMTGAMRTCPTMALEALMELTPLHHI
FT                 IRLKQKATLLRISAEGVGGNHILSHKDAQLLSNELPLLTQPRDEMAAEYIF
FT                 ERNFTVRMSSKREWTTLDEVHPMKPHTIKWYTDGSLTNQGTGLGVVGPRVF
FT                 YHESLGTHTSIFQAEVCAIGRCADINIERNYRNTDISILSDSQAALKAIMG
FT                 TKITSKVVHEVRSKLDLLGTHNRLTLRWVPGHRDIAGNEAADKQARMGAER
FT                 PLTGPEPYCGIGRHTIRLELRNEERQRRHQSWSEAVGLRQARCLLGGYNLV
FT                 RFKQIITMGKNNLRILTGLLTGHCRLRSHLTKLGIYSSDLCRFCEREEESS
FT                 MHILVECVALIRRRSSILGAHVLNYKDIVDLNPTKILTFVRELGLMEEL"
XX
SQ   Sequence 5683 BP; 1596 A; 1427 C; 1530 G; 1130 T; 0 other;
     cctggtctga gaacttgtgg gatggttcgg atggggctga gctgaggcca ccaggcgggt        60
     cgcgggttgc ggatagcgaa cggcctcccc tcggggaggt tagctgcgaa taatacgata       120
     cttttcgtaa ataagcagtc ccggacaaac agcgggtgcg attatgccga tcgcaccgac       180
     aaggcgcttg tgtcgccgcc ttctaaagta tagcctcaca catcccccta tctccccaca       240
     aaactaccta ccacatccta ccccctcatc tcactccggg ccggactaag gcgttattcg       300
     aaccgtgccg agagtcagcc tggctggggg cccggatcaa aactagccca gtctttaacg       360
     gtgagctcag gcaaatggcg accgtctgtt ctaattcagc cttacccggg tattgcggat       420
     ctctgcccgg gcggacactt acttctccgc agctcgtggg attccatgaa aaagttacaa       480
     cacataaaga tatcgcagga tctccctgcg gaacttgtcg caagacaatt agagggtcat       540
     atccctgacg gagaacgacc cttgcgtgtg gtagacaatc ctccacaccg tgctgctcca       600
     gcaacaaata ggagagtgcc acgggcacga gaaactccgg ctgtgaggca tgggagaccg       660
     atggctggta cactcagacc accgcaccca acaccgaaca gcgcgaggca aggcgctcag       720
     cgcccaaaga ggaagggaga gctcctgcca ccaaggggtc aacccggtgg gctggatgac       780
     ccgaaccgga gaaatctctg cggttcaagg gtcaagtggt acctccggta cctccagcag       840
     ggactcaacc ccgatgaagc cctgaaaaag gccaaagagc ccagggagga ggttgcagca       900
     cccgcgccag cctcgaaaag gcggagcagc agtctcacac ctccggtggc cacccccaag       960
     aggatgtgcc cgggggttgt gggcgctgcc cgcggctcgg cagcggcaaa ggtgctgaag      1020
     aacaatgggg caggtaatct ggacctgcgc ccaagcacat cgcgtgcagc ggccacgaag      1080
     cccagctcgc cgacacccac cgagcctcgc ctgtcctatg cagacatggc aaaaaaggta      1140
     aaggtggctg tgttgcccgt gggcttccca agggtcatgc tcagtcacgg agatttatct      1200
     gtgttggaag aggccatcat tgacgaagtc attgcgtctg atggagatgt cgcggtctca      1260
     ttcgtgggca ttcacttccg ggttggattc ctggtaattg aatgctccga tgagacctca      1320
     gccgattggc taaggattgc aacttcgagg ctacagtcgt ggaagggcgt gccccttgag      1380
     tgcaaggtgg gggacgacat tccgtcgccc cactgcatca cgctgttctg ccccaggagt      1440
     gcagctcggt ctaccgaatc cctgttggct ctgctgagga accagaacag gatcgagacc      1500
     gacacctgga aggtgatctc caggaggaac gagggtggag gagccctcct ggtgatcggg      1560
     atagatgaac tatccaagaa tgttattgtg gagaaggggc accaggtctt cttccgttat      1620
     gggaccatcc ccgtaagcgg actgaagaaa aagaagactg cagaaaggcc ccaacttgct      1680
     ccaacgggca gagaggatgt ctcggtgggc aacaccacca catcggacac tcctgccccg      1740
     gagcagggca gtccgactgc gcagcccacc gacccgtcgg aggacctcgc agatgacgaa      1800
     gaactggcag atgcgacgct ctgccaggcg gagatgctgg gggacgacga tatccccatg      1860
     tcctcgcagg agctggagga ggagctgcag gatgcagctg aagctgacgt cactatgacg      1920
     agcagcggtg acggggactg ctccaggccc cattcaccgt gtcagctgga gcctccccaa      1980
     aagtagatgt caaatgtcat caacacaggg ctagcccagg taaacatcca ccgagctaag      2040
     gcagcctcgg cggtcttagc aaggatgttt accaacaaac accttgggct ggccctggta      2100
     caggagccgt gggtgaacga tggcatcaag ggcctgttca cagtcgactc aaaggtaatc      2160
     tgggatcgga gagatccagc acccagagct tgtatcatgg taaggaaaag tattaacttt      2220
     actatccttt cagaattcct gactagagac tgcgttccct tactggttta caccaagggc      2280
     agcgcggtct ctatggttat cgtatccgca tacttcgcag gggatgcacc ctgcccgcca      2340
     ccagagatcg agaagctggt ggagtactgc agaaaagaga agatgccggt gctcatcgga      2400
     tgcgatgcca atgcgcacca tactatatgg ggcagcagtg acatcaatct aaggggtgag      2460
     tgcctaactg attttatttt caaatataat ctagaactag gtaatgtcgg atctacaccg      2520
     acatttgtca ccaggatcag ggaagaggtg ctagacatca ccctgatcaa tcggtcccta      2580
     aagcctcacc ttagggactg gcatgtttcc caagaggaat ccatgtctga tcataggact      2640
     atcctattta acttaaaatt aaatacggat agtagcacac aaagtcgcaa ccctagaaaa      2700
     accaactggg aagggtacaa gtcgacccta ggactttccc tagccaacgg gctgtctggt      2760
     aatcccagaa ggccgctaga gcttgacagg gctattggtt acctcaataa atgcataacc      2820
     aaggcatttg aggataactg cccggtaggg aaaaagtaca tggaaaaaga tgccccatgg      2880
     tggaacgaca gcctagaaag gctgcgcgtg accacacgtc gcctcttcaa taaggcaaag      2940
     agggacggaa tatgggagca gtaccgtgag agcctgacct cctataataa ggagataagg      3000
     aaggccaaac ggaagaatta cagaaacttc tgcgaaggca tagttagcac aagcgaaggc      3060
     gccaggctcc atagagtact ggcgaaacga gcgcctgatg cgaacttagc actgaagcgt      3120
     ggggataact cctttacgag cactgatctg cagaaactag cattactctt cgagacacac      3180
     ttcccaggaa gtacacccct gcaggaagag gctatcgaga gggaaagtag atacaggccg      3240
     tcaactgacg actgggcatg cgccaagtcg acagtctcaa gggagagact taattgggca      3300
     gttggaacat tccaacccta taagtcccct ggaatggacg gcatatcgcc agccttcctt      3360
     caaacgggac aggaaatact tctctcccgt attaggaaag cattagtaag tagcctagcc      3420
     ctcggataca taccgggcgc atggagaaga gctagggtag tcttcatccc caaggcaggg      3480
     aagaaagaca ttaccagccc aaagtccttc agacccatca gcttaacatc gtttttactg      3540
     aaaacgttgg aaaagctggt ggactataaa atcagaagca ctttgcttaa gcaaaggccg      3600
     ctgcacccaa cgcagcatgc atacagagta ggcaggtcca cggacacagc actttatcag      3660
     ctgcgacgta ctttgagtgc ggcaattgat aataaggaag tagcactgtg cgccttctta      3720
     gatatagaag gtgcctttga taacacatcg cacgatgcaa tcaatgctac tcttgaaaga      3780
     agaggcctgg accataccac cagcagatgg ataatggcac tgctacggtc cagacaagcc      3840
     acggcatcat tacatgatag cactgtaaca gtcctaacca ccaaaggctg tccccaaggg      3900
     ggggtgttgt ctccgctact ctggagtctg ttagtagacg aactactaaa cagacttgcc      3960
     aacagtggta ttcaatgtca aggttatgcc gatgacattg ttatcatagc gcgaggcaaa      4020
     tttgaagaat cactctgtga catagtccag tcagggataa ggataacgta tgactggtgt      4080
     agggaggttg gactcaacct aaaccctacg aaaacagtca tcgttccctt taccagacga      4140
     cataagttac agaggatgag acaaatatgg ctctcaggga ccctactaga aacaagtagg      4200
     gaggtcaaat acctgggagt cacttttgac agcagactta actttggcac ccatgtgcaa      4260
     aacacgatat taaagtgctc cagggcgctt tatgcatgtc gtagtattgc cggcaaatca      4320
     tggggaacat caccaaaaat attaagatgg ctgtacctga tggtagtaag acccatgtta      4380
     acctatgggg tggttgcatg gggtgacagg gcgcggatga tcaccgtgaa gaaacaacta      4440
     caaaagttgc aaagaatggc ctgcgtatgt atgacaggag ctatgcgcac ctgccctaca      4500
     atggcccttg aagccttaat ggagctcaca ccactccacc atatcataag gctcaagcag      4560
     aaagctacgc ttctcaggat atcagcagaa ggagttgggg gcaaccatat cctaagccac      4620
     aaggatgccc aactcctttc aaacgaacta cccctactga cgcaacctag ggacgaaatg      4680
     gcagccgaat acatattcga gcgaaatttc acagttcgta tgagtagtaa aagggaatgg      4740
     acaactctgg atgaagtcca tcccatgaaa ccgcacacca taaaatggta caccgatgga      4800
     tcactcacga atcagggcac cggccttgga gtggtgggtc ctcgggtatt ttaccatgaa      4860
     tccctgggaa cgcacaccag catatttcag gctgaggtgt gtgcgatagg gagatgtgcg      4920
     gacatcaaca tagaacgtaa ctatcggaat acggatatat ccatcctatc cgatagtcaa      4980
     gcagcattga aagctataat ggggactaag ataacatcga aggtagtcca tgaagttcgt      5040
     tcaaagctag acctgctcgg gactcacaac aggctcaccc tacgatgggt cccgggtcac      5100
     agggacatag cgggaaacga ggcggctgac aagcaagcaa gaatgggggc agaaaggccc      5160
     ctaacaggac cagaaccgta ttgtggcata gggagacaca ctatacgact ggaacttaga      5220
     aacgaggaga gacagagacg gcatcagagc tggtcagagg cagtaggact ccgacaagcc      5280
     agatgcctcc ttggtggtta taatcttgta cgttttaaac agattataac catgggaaag      5340
     aacaacctta ggatacttac cggtctattg acaggacact gtagactaag gagtcacctg      5400
     acaaaattgg gtatatatag tagcgatctc tgcaggtttt gtgaaagaga ggaggaatcc      5460
     tcgatgcaca tcctggtaga atgtgtcgcc ttaattagaa gaagaagcag catcctaggg      5520
     gcgcatgttt tgaattacaa agacatagta gacctcaacc caacaaagat cctcacgttc      5580
     gtaagggagt tggggctgat ggaagagcta taggctcaga aggggggcac aatagatcaa      5640
     ataggtcgcg gtgcagcttc ccccctaata ataataataa taa                        5683
//
ID   Loa-1_DK    repbase;    DNA;    INV; 4959 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.07, Created)
DT   28-SEP-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4959
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1351-1351 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..1300
FT                 /product="Loa-1_DK_1p"
FT                 /translation="MKAKALYKAALRIQDRLQEKAALSPEEKAKLTWAEEK
FT                 IAEGRLHFAKLPHMXSTGGFANKVEETLANKRQRSTESASMDAPGSKRQRG
FT                 PKEAGPPQMAKKPKKTAKVSEVTKRHLIVALIDRSDEAGKMTEAQWKMVHA
FT                 RLVESLYARMEDDPEAPMPTFDGAGWLNGVKILKCMDDPTRKWLTQAVCQL
FT                 EALWEGAKLEVVDRELIPSTPKAKVLFPIAIQADRALKLLQRQNPDIPTAD
FT                 WKVLHVAAPSPKEGGQSAVLQINKEAEDILYPRYGKMAWGMGSVYLRLKKR
FT                 HPGDKVAHTLKADVVEKDLGLETIVDADREMTLDESDEGEDGDLTVVVNPS
FT                 YGGEASTHDTQGAAAQPP"
FT   CDS           1248..4865
FT                 /product="Loa-1_DK_2p"
FT                 /translation="MEVRPVPMTLRVLQLNLHKSKVASAELLIAMEQGSAD
FT                 IALVQEPWIASGNAIAGLKSANYNLLHPPTVSRNRTAVLVRKGLHANLMSH
FT                 YSSDDLTVVMLESGKKRLLVASCYMAHDRTAPPEELMSLVEASPKDQQLLV
FT                 GADANAHHCVWGSPDINDRGESLLDFILSTNLSIANVGEEHTYVGPTSSNV
FT                 LDLTLVRGQGTLVSEWRVLERPSFSDHKYIRFQYAFEHSPKQSVFRNPRNT
FT                 NWGKFKETIATRLAISPGIVESAEDIEKSLETLSKELLDAYHASCPISDTR
FT                 KRTRPPWWNKDLSLRRNKLKEFFKIAKQAKDDIINEEYKVLLRDYKKEIRK
FT                 AQRNSWRNFCSNIETAPETARLRKLLSKQPTIQSQLKRDDGQWTEGSEEAL
FT                 TALMHAHFPGCTEVPDANKHQDLATGVEHLPKDLISSGRIHWAIDSFARIK
FT                 APGLDGIFPAMLQVTKEVITPWLYAIYTACLSTGYIPIQWRTSRIVFLPKA
FT                 GKCSHVSPKDYRPISLTSFLLKTLEKLLDLYIRNDVGRQLSTNQHAYTKGK
FT                 SVETALHSLVATIERALNNKEYALGVFVDISGAFNNVSTDAIMDRLEATNS
FT                 SPAINLWIKNLLSCRRVQSDWGTASMVRGAHRGTPQGGVLSPLLWNLVVDD
FT                 LIKRFERKAPKITAYADDISIIITGVCPSTLSSIMETTLREICEWAEKVGL
FT                 NINADKTDLILFTKRYKVPQWIPPKINKTRLTPKTQVKYLGIVLDSKLTWR
FT                 ANVVERVKKATIALYASKKMLSSTWGLSPALMHWVYISVVRPTLLYGVLVW
FT                 WQATEKKTYNKLMERTQRQALLCISGALRSTPTKALETIIGIYPLDIQAQL
FT                 TAGKAAQRLVASGNWSLQGFGHSSIGRDMSSTSDYMIPRTCPDVNTTVFMG
FT                 PNDWKSGQDHAQYLNIYTDGSKMEGGVGAGIYCSDPEMRLSYKLPSYCSIF
FT                 QAEVFAIRKAAELAQSINRPHEAVNLFVDSQAAIRSMQSSAVSSKNVLASR
FT                 ESLDSLSTTKSVRIYWVPSHQGIDGNETADELAKEGVGLASERTENVPISL
FT                 RTLQSELERRADASAKSRWRSNSATCRISKIMCKEHNEKLTHYVLHLPRKD
FT                 CRMLVGILTGHCLSAAHAVKLGITDNAKCRKCDESEAIETLEHLICKCPAL
FT                 TRARMRYLGSPVLASLEDASRRKPGELLAFAKNTLIFKDLETRINSL"
XX
SQ   Sequence 4959 BP; 1436 A; 1300 C; 1321 G; 900 T; 2 other;
     ctctctgcgt gtcgccagcg gttacacctc tgatgtgacg ggagcaggtc atgtcagttg        60
     caacgctact gccgaaaaaa ctacgcaggg gaagttgagc cgctcacgtg ccatagtcga       120
     tacagactcg gaccttgaga gcgtgcagct tctccactca ccgaaaccag gcaccagctc       180
     ccagcccagg gacgggccaa agcggtcaag cgagggaatg aaggccaagg cgctgtacaa       240
     ggctgccctc cgcatccagg atcggctcca ggaaaaagcc gccctatccc cagaggagaa       300
     ggcaaagctt acctgggctg aggagaaaat cgctgagggg aggcttcact tcgccaaact       360
     cccccacatg agwtcgactg gcggattcgc caacaaggtg gaggagacgc ttgccaacaa       420
     aaggcaacgc tcaaccgaaa gcgcctctat ggacgcaccg gggagcaagc ggcaacgcgg       480
     gcctaaggag gcaggccctc ctcaaatggc gaaaaagccc aaaaaaaccg caaaagtcag       540
     tgaggtgacc aaacgacact tgatcgtggc cctcattgac agaagcgatg aagccggcaa       600
     aatgaccgag gcgcagtgga agatggtgca tgcgcggctc gttgagtcat tgtacgcacg       660
     gatggaggat gatcccgaag ctcccatgcc caccttcgat ggcgctgggt ggctaaatgg       720
     ggtcaaaatc ctaaagtgca tggatgaccc gacgagaaag tggctgacgc aagcggtctg       780
     ccagttggag gcgctgtggg agggagccaa gctagaggtg gtggaccggg agctaatccc       840
     atccactcca aaagcgaagg tactcttccc catcgcaatc caagcggacc gggcgctgaa       900
     gctgctgcag cgtcagaacc cggatatccc aaccgcggac tggaaggttc tgcacgttgc       960
     ggccccatca cccaaggagg gggggcaaag tgcagtcctc cagataaaca aggaggcaga      1020
     ggacatcctt tatcccagat acgggaagat ggcgtggggc atgggtagcg tatacctgcg      1080
     cctcaaaaag cgccaccccg gggataaggt tgctcacacc ctgaaggcag atgtggtgga      1140
     gaaggaccta ggtctggaaa ccatcgtgga tgccgaccgg gaaatgacgc tggatgagtc      1200
     cgacgaagga gaggacggtg acctgaccgt agtagtcaac ccgtcgtatg gaggtgaggc      1260
     cagtacccat gacactcagg gtgctgcagc tcaacctcca taagagcaag gtcgcgtcgg      1320
     cggaactcct catagccatg gagcaaggat ccgccgacat agctttggtc caggagccat      1380
     ggatcgcctc aggcaatgcc atcgccggac tgaagtccgc aaattacaat ttgctccatc      1440
     caccaacggt aagcaggaat agaaccgccg tacttgtacg gaagggtcta cacgctaacc      1500
     ttatgtctca ctacagctct gatgacctga ccgtggtgat gctagagagc gggaaaaagc      1560
     gccttttggt agcttcctgc tacatggcac acgacaggac ggccccacca gaagaactca      1620
     tgagcttggt agaagccagc ccgaaggacc agcaactgct cgtgggtgca gacgccaacg      1680
     cgcaccactg cgtatggggg agccccgaca taaacgacag aggtgagtcc ctcttagact      1740
     ttatactctc aaccaacctg agtatagcaa acgtggggga ggaacacacc tatgtaggtc      1800
     ccacctcctc aaacgtgcta gatcttactc tkgtaagggg acaaggtact ttggtatcag      1860
     aatggagagt ccttgagaga ccatccttct cagatcataa gtacatacgg ttccaatacg      1920
     cattcgaaca ctctccaaaa caatcagtct tcaggaaccc ccggaatact aactggggaa      1980
     agttcaagga gactatcgcg acacggctcg cgatctctcc gggcatagta gaatccgcgg      2040
     aagacataga aaagtcccta gagaccctct ccaaagaact gctggatgcg taccacgcat      2100
     catgccctat atcggacacg agaaagagga ccaggccacc ctggtggaat aaggaccttt      2160
     cactccgacg caacaaactc aaagaattct tcaaaatcgc caagcaggcg aaagatgaca      2220
     tcatcaatga ggaatacaaa gtcctactta gggactacaa gaaggaaata cgcaaggcgc      2280
     agagaaactc atggagaaac ttctgctcca atatagagac tgccccggaa acggctagac      2340
     tccggaagct gctatcgaag cagccaacca tacagagtca gctcaaacgc gacgacggac      2400
     agtggactga gggcagcgaa gaggccctaa cagcactaat gcacgcgcat ttcccaggat      2460
     gcactgaggt acccgatgca aataagcacc aggacctagc aactggagta gagcatctcc      2520
     caaaagatct aatatcctct ggtagaatcc actgggctat agactccttt gcgaggataa      2580
     aagcaccagg actagatgga atattcccag ccatgctgca ggtgaccaag gaagtgatca      2640
     ccccatggct ctacgcaata tatacagctt gtttaagcac gggctatatc cctatccaat      2700
     ggaggacctc tcggattgtc ttcctgccca aagcaggaaa gtgcagccac gtgagcccca      2760
     aggattacag accgataagc ctcacctcat tcctacttaa aacgctggaa aagctgctgg      2820
     acctatacat caggaacgat gtagggagac aactgtcgac caaccagcac gcctacacga      2880
     aggggaaatc agtggagacg gcactacatt cgttggtagc caccattgag agagccctaa      2940
     acaataagga atatgcactt ggagtgttcg tggacatatc cggggcattc aacaacgtta      3000
     gcacggacgc aataatggat cgcctagaag cgaccaactc gtcccccgct atcaacttgt      3060
     ggataaaaaa tcttctaagt tgccggcggg tacaatcaga ttggggcacc gcttccatgg      3120
     tgagaggagc gcacagaggc acgccgcaag gtggggttct gtcgcccctc ctatggaatc      3180
     tggtggtaga cgacctaatc aagagattcg agaggaaagc accaaagata acagcttatg      3240
     cggatgacat aagcataatt atcacgggag tctgtccatc gaccctcagc tcgatcatgg      3300
     aaacaacact cagggagata tgtgagtggg cggagaaggt aggactcaat atcaatgcgg      3360
     ataagacgga ccttattctc ttcaccaaga gatacaaggt gccgcaatgg atccccccga      3420
     aaattaacaa aaccaggctg accccgaaaa cacaagtcaa atacctcggc attgtacttg      3480
     acagcaagct gacgtggagg gccaatgtag tagagagggt aaaaaaggcc accatagcgc      3540
     tatatgcatc caagaagatg cttagcagca catggggcct ctcacccgct ctaatgcatt      3600
     gggtctacat atcggtggtg cgtccgactc tgctgtatgg agtcttagtg tggtggcaag      3660
     ccacggagaa gaaaacgtat aataagctta tggagagaac ccagcggcag gcactgctct      3720
     gcatatcagg ggcgctgagg tcaaccccca ccaaagcact cgaaaccata atcggtatat      3780
     atcccctaga tatccaagcg caactgacag caggaaaggc ggcacaacgt ctggttgcat      3840
     caggaaactg gtcgctacaa ggtttcgggc acagttcaat tggtcgagac atgagcagta      3900
     catctgacta catgataccc agaacgtgcc cggatgtaaa cacaacagta ttcatgggac      3960
     caaatgactg gaagtcaggc caggaccatg ctcaatacct caatatatac accgacggct      4020
     ccaagatgga aggaggagtt ggagcgggca tatactgttc agaccctgaa atgaggctgt      4080
     cgtataagct accaagctac tgcagtatat tccaggcgga agtattcgcc atcaggaaag      4140
     cagcagagct tgcgcagagc ataaaccgtc cacatgaggc ggtcaatttg ttcgtagaca      4200
     gtcaagcggc gataagatcc atgcaatcat cagcggtcag ttccaaaaat gtactggcaa      4260
     gcagggagtc actagatagc ctaagcacga ctaagtcagt gaggatctac tgggttccca      4320
     gccaccaagg catagacggt aacgaaaccg cggacgaact tgcaaaggaa ggcgttggac      4380
     tggcgagtga aagaacagaa aacgtcccta tctccctaag aacgctccaa agcgagctag      4440
     agagacgggc tgacgcaagc gcaaaaagca ggtggaggag taattccgca acctgcagaa      4500
     tatcaaaaat catgtgcaaa gagcacaacg agaaactcac ccactacgtg ctgcatcttc      4560
     cgcggaagga ctgcagaatg ttagtgggta ttcttacagg tcactgcctg tctgctgcac      4620
     atgcagtcaa gctgggtatt accgacaacg ccaaatgccg gaaatgtgat gaatccgagg      4680
     caatcgaaac cttggagcat ctcatttgca aatgtccggc cctaacgagg gcaagaatga      4740
     gatacctagg ctctccagtt ctggcatcgc tagaagatgc ctccaggagg aagccaggcg      4800
     aactccttgc ctttgcgaaa aacaccttga tattcaagga tctcgaaacc cgcataaata      4860
     gtctctaggt ccatccagga gtttccccgg atagctatgg gccatattgg cctatgtgtg      4920
     gcccctcgag ggccgtccgg tctaacctaa cctaaccta                             4959
//
ID   LOA-1_DPer  repbase;    DNA;    INV; 5512 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila persimilis.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5512
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1663-1663 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~81% identical to bilbo from
CC   Drosophila subobscura.
XX
FH   Key           Location/Qualifiers
FT   CDS           502..1842
FT                 /product="LOA-1_DPer_1p"
FT                 /translation="MEELKNKQNESGTPQMPTGSNPKQGKAAAQRPGPTRK
FT                 SAGKTCAAEDARESPKGSHPGVGVGGELAPKTDTLAEWLCNPAAALPAGKV
FT                 XGDESPSTSVKAKSFTYADRRSAGNILRRQNASQMSSPTDKWIKKVEWASK
FT                 VLPNFGKEAPKKEAPQQKRQRSQETPGPTPKRSRVLPNASFAQIARERTLI
FT                 GVLDKGSVDSRIPRNQWKWVEAALADRCFELLEKQPGPPPPVCRDMGWYQG
FT                 CIKIVACEDERSVQLYKAAVAQVGEVYPGAKLVAVDWSEVPSRPRARVWVP
FT                 ASMKEPERILKMLQRCNPHLPTADWKVVKVETTQGPTNQAVVVLNKESLAP
FT                 IEAAKGELNFGFSSVTVKVYKSDAAAEARPVDKPVEQDAASEIEAPDDHTE
FT                 IDPEGYSTDGTLRCDFEAMCCHEEVEDDPDADITVVENTKDVPEAPSDQSP
FT                 PL"
FT   CDS           1772..5389
FT                 /product="LOA-1_DPer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MPTLQWWRTLRMSLRLLQINLHHCKAASAALILRLEE
FT                 SGADVALIQEPWIVGDKVCGLGSKEYKIIVAQHEGKTRTCILARKHLNIFL
FT                 LHNYSDSDNTAASLELKGTHLRLMSSYMAHEGNDPPNDLVRKLASDSERSD
FT                 IDLLIGCDANAHHTQWGSSNTNVRGESLFSFILNSNLFICNRGNDPTFIIK
FT                 NRQEVIDITLVSSNLLDIVKSWQVLDDHSFSDHRYIETTLSLECPKPKDYI
FT                 NPRKANWEKYSSALEDLLPSKAPSCPDTKDDLDRLVNRFTEACNKAFAAAC
FT                 PSSKPRGKKKPPWWSKQIDILRKSCRTLFNRAKSANEESHWADYKISLSLY
FT                 KKETRKAKRASWQKFCSEIEETSEAARLRKILSKTNPSVGYLKRNDGTWTN
FT                 SSEESLHILLDTHFPGCTTIETAHLPGEGPVTSMDHILTKRNISWAINSFN
FT                 PFKSPGPDQVIPAQLQKAGDTAINWLQGIFRKILAVGTIPRTWLKAKIVFI
FT                 PKAGKASHSAAKDFRPISLSSFLLKTFERLVGLQLRTTIHPQLLSGAQHAY
FT                 RKGKSTETALHEVISAVEKSLHHKEYSLIAFLDIEGAFNNVVPGAITEALT
FT                 DLGVDRHLVMLIDQLLTCRTVTSSMGSSAQSRYVNRGTPQGGVLSPLLWNI
FT                 AVNKILWDLEGGGCKVVAYADDVAIIFSGKYPQTLCDLMSTKLAQLSDWTE
FT                 SRGLGVNPSKTELVLFTNKYKVPPLNPPILQGCRLSFSDSASYLGLVIDKK
FT                 LSWNLNVKDRVKKAMTALYTCKKAIGLRWGMIPSIVQWIYQAIVRPILLYG
FT                 VTVWWPALSKRAITKQLGKVQRTAALCISGALRTTPNDALNAILCLQSLEL
FT                 AGKERAEAAAIRLRDSDQWVTQCIGHSAILNSSTVPSKTDYQVPREYTDTP
FT                 FDTIIPHRDEWLEGLPGPDGAISIFTDGSKLDDRVGGGIYSEQLNIRHSFR
FT                 LPDHCSVFQAEVIAIREALDCLQAAAVTATKLNIYSDSQAAIKSLSAISSN
FT                 SATVADCRKSLHEMAQQFAISLIWVPGHRDIEGNCIADELARSGTTIPLLQ
FT                 DKEDICMPMATCKLIIREQYKRLKNDMWQTVPRCRTTRQTWPTMDMKRTSE
FT                 LLKLSRKRCSVVTRSLTGHWLIGTHANRLGAPHNDFCRSCRDEEEEETVEH
FT                 LFCSCPALSRRRLQHLGSAFLHDISEMSKLCPRRIANFVRASGWDNC"
XX
SQ   Sequence 5512 BP; 1553 A; 1492 C; 1430 G; 1035 T; 2 other;
     cctctggtct gatgagctcg tgaggtggct caaagggggc ctagctgagg ccaccggacg        60
     ggtcgcaggt tgcggatagc gaacgaccta cctatataca ggtcatatag gtaggtcagc       120
     tgcgaataat cggacatccc tagggagagt accgaaaata agcagccccg gacagccagc       180
     gggtgttcgc gaagtagcaa cactgacgat gcgcttgtgg tgccgcctcg tataagtagc       240
     tcacacactc ccctatccct acacactacc tacccacatc ccaacccccc acattcagct       300
     cacaccgggc cggactaaga gtgttattcg acccgtgccg agagtcagcc tggctggggg       360
     cccggtatat aaaactagcc cagtcgttaa cggagagctc agggacttgg cagccccctg       420
     ttctaagtat gccttatccg ggcaacgtgg atctctgccc ggacggaccg taccccttct       480
     ctgcagctcg tgggaataag aatggaagaa ttgaaaaaca aacaaaatga gtctggcact       540
     ccccaaatgc caacagggag caatcccaaa caggggaagg cagcggccca aaggcctggc       600
     ccgacccgca aatcagcagg gaaaacctgc gcggcggaag atgctaggga gagcccaaag       660
     gggtcccatc ccggtgtcgg ggtgggtggt gaattggctc ccaaaaccga taccttggca       720
     gagtggctat gcaatcctgc ggctgctctg cctgctggta aagtggmggg kgatgagtca       780
     ccatctacta gtgtcaaagc caaatccttt acatatgccg acagaaggag tgctggcaac       840
     atactccgtc ggcagaacgc aagccagatg tccagcccga cggacaaatg gattaagaag       900
     gtcgagtggg cctcgaaggt gctgccgaac tttggcaagg aagcaccgaa gaaggaagcc       960
     cctcagcaaa aaaggcagcg ctcgcaggag actccggggc cgacaccgaa gcgctccaga      1020
     gtgctgccta acgcatcgtt cgcgcagatt gccagagaaa ggacgctgat tggcgtcctg      1080
     gacaaaggca gcgtggactc ccggatccct aggaaccagt ggaagtgggt ggaagcggca      1140
     ctggccgacc gctgcttcga gctgctggaa aagcagcctg gacccccccc ccccgtctgc      1200
     agagacatgg gctggtacca gggctgcata aaaatcgtag cctgtgaaga tgagcgctcc      1260
     gtacagctgt acaaagcagc ggtagcgcaa gtcggggaag tctacccagg ggcgaagctc      1320
     gtcgctgtag actggagcga agtgcccagt agaccaaggg cgagagtctg ggtgcccgcc      1380
     tccatgaagg agccggagcg catcctaaaa atgctgcaaa gatgcaaccc ccacctccca      1440
     acagcggatt ggaaggtggt caaagttgag acgacacagg gccccacaaa ccaggcggtg      1500
     gtcgtcctca acaaagagtc gctggccccg attgaggctg ccaaaggcga gctcaatttt      1560
     gggttcagct ctgtgaccgt aaaggtctac aagtcggatg cggcggccga ggcacgtcct      1620
     gtcgacaagc cagtcgagca ggacgctgcc tcggagatcg aagcacccga cgatcacaca      1680
     gagatagacc cagagggcta ctccaccgat ggcacgctga gatgcgactt cgaggcgatg      1740
     tgttgccacg aggaagtcga ggacgatccg gatgccgaca ttacagtggt ggagaacact      1800
     aaggatgtcc ctgaggctcc ttcagatcaa tctccaccac tgtaaagcag catccgctgc      1860
     tcttatactc cgcctcgaag agagcggagc agacgtagcc ctgatccagg aaccttggat      1920
     agtgggagac aaggtttgtg gattagggtc gaaggagtac aagataattg tagctcaaca      1980
     tgaaggtaaa acccgcacct gcattctcgc cagaaagcac cttaatatct ttctgctcca      2040
     taattatagc gatagcgaca acacggcggc aagcctagag ctgaaaggga cacatctaag      2100
     gctgatgtcg tcctacatgg cccatgaggg aaacgatccc cccaacgacc ttgttcgcaa      2160
     actagccagc gacagcgaga ggtcggacat agacctatta ataggttgcg atgccaacgc      2220
     tcaccacact caatggggga gctcgaacac aaatgtaagg ggtgagtcac ttttcagctt      2280
     catccttaac tcaaatctat ttatttgtaa tcggggcaac gaccccactt ttataattaa      2340
     aaatcgacag gaggttattg acatcaccct agtgtcttcc aacctgttag acatagtcaa      2400
     gagttggcaa gtccttgatg accactcctt ctctgaccac agatacatcg agaccacact      2460
     atccctcgag tgtccgaaac ctaaggacta tattaatccc aggaaagcca actgggaaaa      2520
     atatagctca gccctggagg acttactccc ctccaaagca ccatcatgcc ctgacacaaa      2580
     agacgaccta gatcgcctag tgaacaggtt cacagaggca tgcaacaaag ccttcgcggc      2640
     agcatgcccc tctagcaaac ctagggggaa aaagaaaccc ccctggtggt caaaacaaat      2700
     agacatccta cgtaaaagct gcaggaccct tttcaacagg gccaaaagcg cgaacgagga      2760
     gagccactgg gcagactata aaatcagtct gtcactatat aaaaaggaaa caaggaaagc      2820
     aaaaagggcc tcttggcaaa aattttgctc ggaaattgag gaaacatcag aggccgcaag      2880
     gcttcgcaag attctctcaa aaactaaccc ctcggtaggg tatcttaaaa ggaatgacgg      2940
     cacgtggact aactccagtg aggagtccct gcacattcta ctagacacac attttccagg      3000
     gtgcacaacc atcgagacgg cacatcttcc aggagaggga ccggtaacct cgatggatca      3060
     catcctcaca aaacgtaaca taagctgggc aataaacagc ttcaacccgt tcaaatcgcc      3120
     aggcccagac caggtaatcc cggcccaact tcagaaggcc ggggatacgg ccataaactg      3180
     gctacaaggt atcttcagga agatactggc tgtgggtaca atcccgcgaa catggcttaa      3240
     ggcaaagata gtcttcattc ccaaagctgg gaaagcctcg cactcagctg caaaagactt      3300
     tagaccaatc agcctatcgt ccttcctcct caaaaccttt gagagactcg tcgggctgca      3360
     actgaggaca actatacacc ctcagttgct gtcaggcgca cagcatgcct accggaaagg      3420
     aaaatccacg gaaacggctc ttcatgaagt gatctctgcg gtagagaaat ctctgcatca      3480
     caaagagtac tcactcatag cctttctcga tattgaggga gctttcaaca acgttgtacc      3540
     gggtgccatt acagaagccc tgactgacct gggggtggac cgtcacttgg tgatgctcat      3600
     tgatcaattg ctcacatgca ggacggtgac atcatcgatg ggatcgtccg cccagtcaag      3660
     gtatgtcaac agaggcaccc cgcaaggtgg tgtcctgtct cctcttctgt ggaacatagc      3720
     agtcaacaag attctatggg acctggaggg ggggggctgc aaagtcgtgg cctatgcgga      3780
     tgacgttgcg attattttct cggggaaata cccccaaaca ctgtgcgact taatgtccac      3840
     aaagctagcg caactgtcgg attggacgga atcgcgcggt ctgggagtaa atccctcaaa      3900
     aacggaactc gtattattca caaataaata caaggtcccg cccctcaacc ctccaatact      3960
     acaaggatgc aggctctcct ttagcgacag tgccagttac ttagggttgg taattgacaa      4020
     gaagcttagc tggaacctga atgtcaaaga cagagtgaag aaggcaatga ctgcactcta      4080
     tacatgcaaa aaagctattg ggctaagatg gggtatgatc ccaagcatag tccaatggat      4140
     atatcaagct atagttagac caatactact ctacggagtt acggtgtggt ggccagccct      4200
     atcaaaaagg gcgatcacca agcaactggg caaagtccag cggactgccg ccctatgcat      4260
     cagcggagct ctccgcacca ccccaaatga tgcgctaaat gccatcctat gcctacagag      4320
     ccttgaactc gcaggaaagg aacgggcaga agcagcagca atacgtctaa gagactcaga      4380
     tcaatgggtg acacagtgca taggtcactc agccatatta aatagcagta ccgtcccctc      4440
     aaaaacagac taccaagttc caagagagta tacagacact cccttcgaca caatcatccc      4500
     tcatagagac gaatggctcg agggactccc aggccctgat ggggccataa gcatcttcac      4560
     agatggatca aagctggacg acagagtcgg agggggaatc tactctgaac agctaaacat      4620
     aaggcattcc ttcagactcc cagatcattg cagtgtcttt caagcggaag tcatagcaat      4680
     cagggaggca ctagactgcc tacaagcggc tgccgtcacg gcaaccaagc taaacattta      4740
     tagcgacagc caggctgcga tcaaatcgct aagcgcgatt tcctcgaact cggccaccgt      4800
     ggcagactgc cgcaaatctc tgcacgagat ggctcagcaa tttgctatta gcctaatttg      4860
     ggtcccgggc caccgggaca tcgagggcaa ctgtatagcg gacgagctgg ccagatctgg      4920
     cactacaatc ccccttctcc aagacaagga ggatatctgt atgccaatgg ccacctgtaa      4980
     gctcatcata agggagcaat acaagcgact aaaaaacgat atgtggcaaa cagtgccacg      5040
     atgtcgcaca actcggcaaa catggccgac catggacatg aagcgcacct ccgagctcct      5100
     caagttaagc aggaaaaggt gcagcgtagt cacacgttcc ctcacgggac actggctaat      5160
     aggcacccac gctaacaggc tgggggcccc acataacgat ttttgtcgca gctgtagaga      5220
     cgaggaagag gaggagacag tggaacatct gttctgctcc tgcccggctc tcagcagaag      5280
     aaggctacag cacctgggct cagcctttct acacgacatc tcagagatgt ccaaactatg      5340
     tcccagaagg atagcgaact ttgtgagagc atctggatgg gataattgct gacaggaagt      5400
     ctcacaacgc aggaaggaaa tgatcctatg cggtatcaca acgggccgaa accggcctaa      5460
     gtgtgacggg ctccgagcga gcccggcagc cgcctcaacc taacctaacc ta              5512
//
ID   Loa-1_DPs   repbase;    DNA;    INV; 3460 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 17.07, Created)
DT   06-JUL-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila pseudoobscura genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DPs.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-3460
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila pseudoobscura
RT   genome.";
RL   Repbase Reports 12(7), 1364-1364 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1697
FT                 /product="Loa-1_DPs_1p"
FT                 /translation="MEADKEQARVGMSTQTSVESVTATTGGHGEEQSSLRV
FT                 ASGHTSGMAGAGHVSCNTTATKTTRCRVSRAGAVVDADSDPESVLSISKTE
FT                 EESLLRSPEPGTSSLRREGPKRSREGMKAKAQYKAALKLLSRLRGKADISQ
FT                 EEKSKLARAEQRVQEGREHYAQLPQMKATNGGFANKVEEMLATKRQRSIES
FT                 AAKDTPASKRQRGPKVATPQPKTRKPRQKAMSEVSKRHLIVALIDRSDENG
FT                 KMTAAQWKLVHAQLVEALFSRMEEDPSAPMPTFDGAGWLNGVKILKCNDDP
FT                 TRQWLVQKVPLLEALWEGAKLEVVDRELXPADIPKAKVLFPIAVQGERALK
FT                 LLQRQNPDVPTADWKVLHAGSPLPNEGGQHVILQISKEAEDILYPKFGKMA
FT                 WGVGSVYLRLKKRHPEDKDAHTLQAGEVEKDLGLETIVEAAQGLALDDSEE
FT                 EEDGDLTIIVNPSCEVELATHDTKGAATQSP"
FT   CDS           1666..3459
FT                 /product="Loa-1_DPs_2p"
FT                 /translation="MTLRVLQLNLHKSKVASAELLIAMEQGPADIALVQEP
FT                 WIASGNSVAGLKSSNYNLLYSTSVSRNRTAVLVRKGIHAHLMSHYSTDDLT
FT                 VVMLESEEKRLMAASCYMAHDRPAPPEELRSLVTEAGSKNLQLLIGADANA
FT                 HHNVWGSPDINDRGESLLDFILSTNLDVANVGEEHTFVGPTSSNVLDLTLV
FT                 TGKSTSVSDWRVLERPSFSDHKYIQFKCEFKHSSKITVYRNPRNTNWVKFK
FT                 KTVTSKLANPGSVKSAEDIEKSLKTLSNELLNAYHASCKPSRTKRRSKPLW
FT                 WNRDLSLQRNNLKEFFKIAKQANEEIVNEEYKILLRSYKKEIRKAQRNSWR
FT                 NFCSNIEKVPETARLRKLLSKQPTVQSQLKLDNGQWTEGSKEALTALMEAH
FT                 FPGCTEVTDAKEHQDLATEEQHPPIGLLTTKRIHWAIDSFAGIKAPGLDGI
FT                 FPAMMQLTKEVITPWLFAIYSACLSTGYIPIQWRTSRVVFLPKAGKCSHVS
FT                 PKDYRPISLTSFILKTLEKLLDLHIRNEVGGLMSTNQHAYTKGKSVETALH
FT                 SLVATIESALHNKKYALGAFVDISGAFNNVATTAITSRLEANNIHPAINVW
FT                 "
XX
SQ   Sequence 3460 BP; 957 A; 940 C; 981 G; 580 T; 2 other;
     ggctggcaaa aaccctctag ctgaaccctc cacgagggcg ccggctgggc aatggacact        60
     gcattatccc gggcgaggat aatgcactgt cgcttgccct gcccggggta atgcagtgtc       120
     tagctaaggc tatggtccat cgtcttcccg atctaaagtc gggggaactg aaccaaggcc       180
     atggctagag gtgcctggcg gccaggcata aaacgctagg gggtggtccc cccgaaaaac       240
     attaaccggt atggaccttc gggccaaata tggaggcaga taaggagcaa gcacgggttg       300
     ggatgtcaac ccaaacgtcg gtggaaagcg tgactgctac caccggcggg cacggggagg       360
     agcaatcctc tctgcgtgtc gccagcggtc acacctcggg catggcggga gcaggccatg       420
     tcagttgtaa tactactgcc acaaaaacga cgcgttgcag ggtgagccgc gcgggtgccg       480
     ttgtcgacgc agactcggac ccggagagcg tgctatccat tagcaagacc gaagaggaaa       540
     gccttctccg ctcgccggaa ccaggtacca gctccctgcg tagggaaggg ccgaagcgtt       600
     ccagggaggg gatgaaggca aaagctcagt ataaggcggc cctcaagtta ctgagccggc       660
     tccggggcaa ggcggatatc tcccaagagg agaagtccaa gctagcccgg gctgagcaac       720
     gggtacagga gggccgcgaa cactacgcgc agttgcccca gatgaaggca acaaacggtg       780
     gattcgccaa caaggtggag gagatgttgg ccaccaagag gcaacgctcg atcgagagtg       840
     ctgccaaaga cactccggcg agcaagcggc aacgcgggcc caaggtggcc accccccagc       900
     cgaagacgag gaagccgaga cagaaggcca tgagcgaggt gtccaagaga catctcattg       960
     tggccttgat cgaccgcagc gacgagaacg ggaagatgac ggcggcgcag tggaagttag      1020
     tccacgcgca gctcgtcgag gcactattct cgcgaatgga ggaggaccct agcgctccca      1080
     tgcccacgtt cgatggagcg ggatggctga acggggtcaa aatcctcaag tgtaacgacg      1140
     acccaacgcg gcagtggctg gtgcagaagg tgcccctact ggaagctctg tgggaggggg      1200
     ccaagctgga ggtggtagac agggagctga ngcccgccga cataccaaag gcgaaggtgc      1260
     tcttccccat tgctgtccag ggggagcgag cactgaagct gctgcagagg caaaatccgg      1320
     acgtgccaac ggctgactgg aaggttctgc acgccggtag cccactaccc aacgaggggg      1380
     gccagcacgt gatcctccag atcagcaagg aggcggagga catcctgtat cccaagttcg      1440
     ggaagatggc gtggggcgta ggtagcgtat acctacggct gaaaaagcgc caccccgagg      1500
     ataaagatgc gcacaccctc caggcaggcg aggtcgagaa ggacctaggt ctggagacca      1560
     tagtggaggc cgcccagggt cttgcgctgg acgactcgga ggaggaggag gacggtgacc      1620
     tgacaatcat agtcaacccg tcgtgcgagg ttgagttagc cacccatgac actaagggtg      1680
     ctgcaactca atctccataa aagcaaggta gcgtcggcgg agctcctcat tgccatggag      1740
     caagggcccg ccgacatagc tttagtccag gagccgtgga ttgcgtcagg caactccgtg      1800
     gccggactaa agtcctcaaa ttacaacctt ctctactcaa catcggtaag caggaacaga      1860
     accgccgtac tcgtacggaa gggaatccat gctcatctta tgtctcatta cagcacggat      1920
     gacctgacgg tggtgatgct ggagagcgag gaaaagcgcc taatggcggc ttcctgctac      1980
     atggcncacg acaggcccgc cccaccggaa gaacttagga gtctggtgac agaagccggc      2040
     tccaaaaatc tccaactcct catcggcgcg gacgccaacg cccatcacaa tgtgtgggga      2100
     agccccgaca tcaacgatag aggtgagtca ctcctagact ttatcttatc cactaactta      2160
     gacgtagcaa acgtggggga ggaacacacc ttcgtgggtc ccacctcgtc aaacgtgcta      2220
     gacctaactc ttgtcacggg aaagagtacc tcggtatctg actggagggt cctcgaaaga      2280
     ccatccttct cagaccataa gtacattcag ttcaagtgcg aattcaaaca ctcttcgaag      2340
     ataacagtct atagaaaccc ccggaacaca aactgggtaa agtttaaaaa gacagttact      2400
     tcgaagctcg cgaatccggg ctcagtgaaa tccgcggagg atatagagaa gtccctaaag      2460
     accctatcca acgagttact gaacgcctac catgcatcgt gcaaaccctc gagaacgaag      2520
     aggaggtcca agccactctg gtggaaccga gatctctctc tccaaaggaa caacctcaag      2580
     gaattcttca agatcgccaa acaagcgaac gaagagattg tcaatgagga atataaaatc      2640
     ctacttagga gctacaagaa ggaaatacgt aaggcacaaa ggaactcgtg gagaaacttc      2700
     tgctccaaca tcgagaaagt gcccgaaacc gctaggctcc ggaagctgct ttcaaagcag      2760
     cccacagtac agagccaact aaaactagac aacggacagt ggacagaggg cagtaaagaa      2820
     gccctaacag cactaatgga ggcgcacttc cctggatgca ccgaggtcac tgacgccaag      2880
     gagcatcagg acctagcaac cgaggaacag caccccccaa taggtctgtt aaccactaag      2940
     agaatccact gggccataga ctccttcgcg ggcataaaag caccaggact ggacgggata      3000
     ttcccagcca tgatgcagtt gaccaaagag gttattaccc catggctctt cgcaatatac      3060
     tcagcatgcc taagtacggg ctatatcccc atccaatgga gaacctcgag agttgtcttc      3120
     ctccctaagg caggaaagtg cagccacgtg agtcccaagg attacagacc gataagcctt      3180
     acctccttta tactaaaaac actagaaaag ctgttggatt tacacatcag gaatgaggta      3240
     gggggactga tgtcaacaaa ccaacacgcc tacaccaagg ggaaatcagt ggagacggca      3300
     ctacactcgc tagtagccac catcgagagc gcccttcaca acaaaaagta tgctttggga      3360
     gcatttgtgg acatctcagg agcattcaac aacgtggcca caaccgcaat aacaagtcgc      3420
     ctagaagcga ataacataca ccctgcaatc aacgtctgga                            3460
//
ID   Loa-1_DRh   repbase;    DNA;    INV; 5045 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5045
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1689-1689 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97.5% identical to consensus. The consensus is ~96.5% identical
CC   to that of Loa-1_DT.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           79..1353
FT                 /product="Loa-1_DRh_1p"
FT                 /translation="METINKNTNKKTETGTPQKPGAAKMNDGSTASTSRAQ
FT                 KGPHPKLGMSGDRKTVANASAMCASAPKPAVGAAKSIGSPAGVKKFTYAER
FT                 RTAAQTLRSHARSNVATPSPEWLKKVEWARTVFPNYGQEKPQQEGAQAKRQ
FT                 RSIELPGPSAKRSKIQPSVSFAEITKDRVLLGLIDRGNPENRIPRNKWKAV
FT                 ESKLSLICLRMVREKPGSAPCCMDAGWYQGSVKVVACDNQRSADLYKQAVA
FT                 QLGAVYEGANIVALDWCDVPSRPRARIWLPAAIASPEDILYMLQECNPHLP
FT                 TKDWKVVKVEEHAGDVNQAIVVLNKESVAPIEAARGTLNYGFSAIHIKIYK
FT                 GDSNSSGSPAGNPAEQVLAEEVEAPGVPEDGYSTDSSLSREMRAMGPAIDE
FT                 VDLSDSEADVTVVEVAAGDVAKTPADQPTSQ"
FT   CDS           1316..4903
FT                 /product="Loa-1_DRh_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLRLLQINLHHSKAASAALLLRLAKGEADVVLVQEP
FT                 WVAGGRVAGLGTKDYKLMLDPKQGKIRTCILAKRHLSTFLLRNYSNGDNTA
FT                 ISLELQSGSIRMLSAYMAFEKVDPPDALVRGLVQECEELKKGLVIGCDANA
FT                 HHTQWGCPINNDRGESLFDFILNSNLFLCNRGNTPTFITKTCQTIIDLTLA
FT                 SDSLISTVTNWAVSDEHSFSDHRFIETTLSLVSPAPVSFANPRRANWNKYK
FT                 EILSSFLPREPPESTLCTQELDNIVNKFTEACNAAFTAACPLGKPRGKKKP
FT                 PWWTQQLSILRAKCRNLFNRAKAANEDINWQSYKKELATYKKAIRKEKRTA
FT                 WQNFCSDIEKTTDAARLRKILSKTAVSLGYLQKADGSWSDSSEESLNLLLD
FT                 AHFPGSLQTGHPPGRHTGEGINLNLLLSDRNINWSIHSFKPYKSPGPDNIT
FT                 PAHIQQAGELAINWLRKIFQTILAVGELPTAWRETKVVFIPKAGKATHTTA
FT                 KDFRPISLTSFLLKILERLXGLHIRDIIDPTQISEAQHAYTKGKSTESALH
FT                 LVVSNIEKSLSIQEYTLIAFLDIEGAFNNVLPTAITESLTELGVEPPLVGL
FT                 IHKLLISRLVTATLGTSTQTRLVNRGTPQGGVLSPLLWNIAVNKLLRILEG
FT                 GGCKIVAYADDVAIIFNGRYPQTLCDLMTAKLKTLSEWTTKNGLGVNPSKT
FT                 ELVLFTNRYKIPKLNPPTLNNCNLSFSEHARYLGLVLDKRLKWGLNNQERT
FT                 KKATIALYSCKKAIGLRWGMSPKIVNWIYTAVVKPILLYGVALWWTALHKQ
FT                 CILTPLNKVQRMAALCISGALRTTPNEALNAILNLQSLDLAGMERAKSAAI
FT                 RLRDTGQWKAQLYGHAKILQHDKLIPPKTDLCKTREYSHTPFEALIPGREV
FT                 WDRGRPGSIDAICLYTDGSKLDGHVGGGIYSEQLEIRRSFRLPDHCSVFQA
FT                 EVYAIMEALVCLRDLNTQNRHINIYSDSQAAIKSIYSTNTNSRTIADCRKS
FT                 LHEMASQFTVSLIWVPGHRDIVGNCIADELARQGTTIPLLPGKENVGMPMA
FT                 TCKLIIKNHFSKLANTHWQNTPQCRISHQTWPAINNKKTSELLNFSRTECG
FT                 MLIRVLTGHWLVGAHAGRLKAPKNDFCRSCRDEEEEETVEHLLCSCPALCR
FT                 LRLKHLGYPFINDLTEISQINLKSLSSFIKSSGWGTC"
XX
SQ   Sequence 5045 BP; 1537 A; 1267 C; 1209 G; 1029 T; 3 other;
     atctaccgcc ttacccgggt accgcggatc tctgcccggg cggacctttc cccttctccg        60
     cagctcgtgg gaccaattat ggaaacaata aataaaaata caaataagaa aacggagacg       120
     ggaactccac aaaaacccgg cgctgcaaag atgaacgatg gttccactgc aagcaccagt       180
     agggctcaga aagggcccca tcccaaacta gggatgtcgg gggacagaaa gactgtcgct       240
     aacgcctccg ctatgtgcgc atctgcgcca aaaccagcgg taggcgcagc aaagtcgatc       300
     gggtcacccg ctggtgtaaa gaagttcaca tacgcagaga gacggactgc cgcccaaacc       360
     ctgcgctcgc atgccagaag caatgtcgcc acgccttcgc ccgaatggct aaagaaggta       420
     gagtgggcaa ggacggtgtt tcccaactat gggcaagaga agccccagca agaaggtgct       480
     caggcgaaga ggcaacgctc catagagctg cccggcccgt cggcgaagag atcgaagatc       540
     cagccgtcgg tctcctttgc cgagatcacc aaagatcggg tcctacttgg actcatagac       600
     aggggaaatc cggagaacag gatccccaga aataaatgga aggcggttga gtccaagctg       660
     tctcttattt gcctgcgtat ggtacgcgag aagcccggtt cagcgccttg ctgtatggac       720
     gcgggctggt accagggcag tgtaaaagtg gtggcctgcg ataatcagcg atcagctgac       780
     ctatacaaac aggcggtagc tcagctcgga gcagtttacg aaggggcgaa catagtcgca       840
     ctagattggt gtgacgtccc cagtagacca cgagccagaa tttggctccc agcagcaatc       900
     gcatcaccgg aggacatcct ttatatgttg caagaatgca acccacatct ccccacaaaa       960
     gactggaaag tcgttaaggt ggaggagcac gcaggtgacg tgaaccaagc gatcgtggta      1020
     ctgaataagg agtcggtcgc tcccatagag gctgctcggg gaacgctcaa ctatgggttc      1080
     agtgccatac atattaaaat ttataaaggg gactctaatt cctcgggaag tcctgccggc      1140
     aacccagccg agcaggtgct tgcggaggaa gtggaggccc ctggtgtgcc ggaggacggc      1200
     tactcaaccg actcgtcgct gagcagagag atgcgagcga tgggaccggc aatcgatgaa      1260
     gtggacctga gcgattcgga ggccgacgtt actgtggtgg aggttgcagc tggggatgtc      1320
     gctaagactc ctgcagatca acctacatca cagtaaagca gcgtccgctg ctcttttgct      1380
     tcgcctggcc aaaggcgaag ccgacgtggt cttagttcag gaaccctggg tagcaggagg      1440
     cagggttgct ggactaggaa caaaagacta caagcttatg cttgacccca aacaaggtaa      1500
     aattcgaacc tgcattttag ccaaacggca tcttagtaca tttctgcttc gcaactacag      1560
     caacggagac aacacagcaa taagcctgga gctgcaaagc ggctctatta ggatgctatc      1620
     ggcctacatg gcttttgaaa aggtagaccc cccagacgcg ctagtcagag gactggtaca      1680
     ggaatgtgaa gagcttaaga aaggtttggt gataggatgc gatgcaaatg cccaccatac      1740
     tcagtggggc tgccctatca acaacgacag aggtgagtct ttatttgatt tcattctaaa      1800
     ttcgaactta tttctttgta acaggggcaa tacccctact tttataacaa aaacgtgcca      1860
     aacgatcata gatctaaccc tggcatcaga ttcactcata agcacagtca caaactgggc      1920
     tgtctccgac gagcactcat tttcagatca taggtttata gagacaactt tgtccctagt      1980
     gtcacctgcg ccggtcagct ttgccaaccc caggcgggca aactggaata aatacaaaga      2040
     aattctatcg agcttcctcc ccagggagcc accagaaagc actctttgca ctcaggagct      2100
     agataatata gtaaacaaat tcacagaagc atgcaacgcg gcattcacag ctgcatgccc      2160
     gttagggaaa ccaagaggaa agaaaaaacc tccttggtgg acccagcaat tatcaatcct      2220
     cagagccaaa tgcagaaacc tgttcaacag agcgaaagct gcaaatgagg acataaactg      2280
     gcaaagctac aaaaaggaac tagccacata caaaaaggcc atcagaaaag agaagagaac      2340
     tgcgtggcag aacttctgct cggatattga aaagacaact gatgccgcaa ggctcagaaa      2400
     aatactttct aagacagccg tatccctggg ctatctccaa aaggctgacg gatcatggtc      2460
     ggactctagt gaagaatccc taaacctact cctagacgct cacttcccag ggagcctgca      2520
     aacaggacat cccccaggaa gacacactgg agaaggaata aacttaaatc tcctactatc      2580
     agaccgtaat ataaactggt ccattcatag ttttaagcca tacaaatcgc cgggaccgga      2640
     caatataaca ccggcacata ttcagcaagc aggagagcta gctataaact ggctgagaaa      2700
     aatcttccag accattcttg cagtaggaga actacctaca gcatggcggg aaacgaaagt      2760
     cgttttcatc cctaaggcag ggaaggccac ccatactaca gcgaaggatt tcagaccgat      2820
     aagtctgaca tcattcctgc taaaaatcct agaaagactg wtaggtctac acattagaga      2880
     catcattgac ccgacgcaga tatcagaggc gcaacacgca tacaccaaag gtaagtcgac      2940
     cgaatcggcg ctacacttgg tagtaagcaa catcgagaaa tcactcagta tacaagaata      3000
     caccttgatc gccttccttg acatagaagg agctttcaac aacgtgctcc ccacggcaat      3060
     aacagaatcc ctcactgaac taggggttga gccaccgctg gtggggctga tccacaaatt      3120
     gctgataagc agactggtca cggccacact agggacctcg acccagacta gattagtgaa      3180
     cagaggcact ccgcaaggag gtgtactatc acccctctta tggaatatcg cggtaaataa      3240
     actactgcgg attcttgaag gaggaggctg taaaatagtg gcatacgcag acgatgtcgc      3300
     tatcatcttt aatggtaggt atccacaaac gttatgcgat cttatgaccg caaaactaaa      3360
     aacactatcg gaatggacta caaagaacgg acttggggta aatccctcaa aaacggaact      3420
     agtccttttt acaaatagat acaaaatccc aaaacttaac ccacccactt taaacaactg      3480
     taatctctct tttagcgagc acgcaagata cttggggtta gtattagata agcgtcttaa      3540
     atggggctta aacaaccaag agagaaccaa gaaagcgacc attgcacttt actcttgtaa      3600
     aaaagcaatc gggctaagat ggggtatgtc ccctaaaatc gtcaattgga tatacacagc      3660
     ggtagtcaag ccaatcctac tatatggagt ggctctgtgg tggaccgctt tacacaaaca      3720
     atgtatctta actcccctta acaaagtaca gcgcatggcg gccttgtgta ttagtggagc      3780
     ccttcgaact accccaaacg aagcgctgaa tgcgatcttg aacctccaga gcctggactt      3840
     agcaggmatg gaaagggcga aatcggcagc cattcgacta agggatacgg ggcaatggaa      3900
     agcccaactg tatggtcacg ctaagattct tcagcatgac aaattgatcc cgccaaaaac      3960
     ggatctatgt aaaacccgtg aatacagtca cacgcccttc gaagctctga tcccaggcag      4020
     ggaagtatgg gatcggggcc gaccgggctc aatagacgca atctgtttat atacagacgg      4080
     ctccaaacta gacggacacg taggtggagg catatactcc gagcaattag agatcaggcg      4140
     gtcwttcaga cttcctgacc actgcagtgt cttccaagcg gaagtgtatg ctataatgga      4200
     agcacttgtc tgtttaaggg acttaaacac ccagaacaga cacataaaca tatatagtga      4260
     tagccaagcg gctattaaat caatctactc gacgaataca aactcccgaa caatagcaga      4320
     ctgtcgcaaa tctctccacg agatggctag tcagtttact gtcagcctta tatgggttcc      4380
     gggtcaccgg gatatcgtag gcaactgtat agcagacgag ctagccaggc aaggcaccac      4440
     catacctctc cttccaggaa aggagaatgt cggcatgcct atggctactt gcaagctaat      4500
     tattaaaaac catttcagca aattagccaa cactcattgg caaaacacac cgcaatgccg      4560
     aatctctcac cagacatggc ctgcaataaa caataagaaa acatcagaac tactcaattt      4620
     cagccgcact gagtgcggca tgctaattcg agtactcaca ggccactggc tcgttggcgc      4680
     acacgccggc aggctaaaag ccccaaaaaa tgatttttgt agaagctgca gggatgagga      4740
     agaagaggaa acggtggaac acctactctg ttcatgccca gccctatgca ggcttagact      4800
     gaaacactta ggatatcctt tcataaatga cctgaccgaa atatcgcaga ttaacctgaa      4860
     gagtctaagc tcttttatta aatcctccgg atgggggact tgctgatcga ccaacctaca      4920
     ggctgactct taacggatag gggacccaaa aatagagatc atacggtatc acaatggacc      4980
     cacagaggtc taagtgtgcc aggctatagt ctggcagccg tcctaaccta acctaaccta      5040
     accta                                                                  5045
//
ID   LOA-1_DSer  repbase;    DNA;    INV; 5296 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5296
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2053-2053 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..1620
FT                 /product="LOA-1_DSer_1p"
FT                 /note="DUF4780."
FT                 /translation="MKMTSKNRASELLGEDKPQTMSTKDEKEMQRPRLVAA
FT                 SHIVSETDEEESQSEGRASSTPQSKHTGGAQLSTTSEIAKMSHHQRRARVN
FT                 RARFVLGKIAKNEAEGKTDPRDAEDKAKFLAEIAEYEQYKAANPAAFQPSK
FT                 AKRIRSQEVSESAPKRAKDPQGKPRATNFVSQAKKFSEVARDSLAMALVDE
FT                 LHDDGRLLSEKWEEIEAKLADMVTDRLVSMPTGPIPSFDSSDVVRGHRVIR
FT                 CDDGFSRSFLAECVAKISDTWAGLKIRLVHAREIPRRPRARIWLPKGQTDH
FT                 ARVIACLKAQNPDIHTEDWTILRAEQEMKASQPFLLLINQQCLPQLEANDH
FT                 KVRYGIRKAKIKVFLAEPDEILEEVDDTNKLLDDMVIDDKSPDATPTNIDV
FT                 ENRAD"
FT   CDS           1529..5188
FT                 /product="LOA-1_DSer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTPTNCWTTWSSTTNLRTPPPPTSMSRIVQINLKRSS
FT                 HASANLTILLRERDIDIGLIQEPWTRDGQVAGLRIQGYTLLCTNSDGRSRA
FT                 CIVIKNHFNAFLCPNLSTPDLAVARFVAADGSGVTISSAYMAHDEPAPPEP
FT                 VVKLLHWAEATKTTLVLGCDANARHTLWGSSETNERGESLFDNIICRNVTI
FT                 CNKGNTPTFIFPSTENFQGWEEVLDLTLHVEHNNYRVENWRVSTEHSFSDH
FT                 RYIFFEITTPVKKQVPRRNPRKTDWNNFSEIVRSKVNGRRIKTISTAKALD
FT                 KEVEDLTNILNNAFKETCKLTFSKKQYPPWWTKELSELRKSARKSFNHSYA
FT                 TRDWGTYKEAQKIYKKAVYKAKKESWQNYCESLEGIKDTARVSKILAKGHI
FT                 SPTLINRADGSATTTIEESLELLVDTHFPGSLRVSSEPEEGTSSQMDTPTK
FT                 DIITTERIQWAIDSFDKYKSPGPDGLIPAMLQSAKDSICKWLKAIYEACLR
FT                 LTHVPLLWREAKVIFIPKPGRRGHILAKDYRPISLTSFTLKTLERLLDVHI
FT                 RESLEGHQLSDAQHAYRRGKSTETALHVVVHHVEKTLQHKQYTMAAFLDIE
FT                 GAFNNVNPDSILGSLNLLGIERGIREWIGVMLKSRTITAELSGTHLTRTVK
FT                 RGTPQGGVLSPLLWLTNMNAILTDLNTGGVKAVAYADDVVLLVSGPYPDVI
FT                 SEIMTGALGRLNKWAETCGLGINPTKTELMLFTRRTKIPPFNMPSINGMEL
FT                 KLSERAKYLGVILDKKLSWKDNIAERVRKASIAFYSCRKMFGNKWGLHPKI
FT                 ILWLYTAVVRPILTYGALVWWPALTRAYNRTKLTRMQRAASAGAVGAMRSC
FT                 PAAALNAILDIMPIELFVKDTAAQSAVRLKASNCWRDYGAGHGKILANSGI
FT                 NTDVKTDYMIAEMKFGNAFSTSYPSRDDWSRGRVVVENEVSLYTDGSKMSC
FT                 GVGAGIFAENWGIEKAFNLSNSATVFQAELLAIREAVELSLRQDLRGKRVR
FT                 IYSDSQAAIKSLSAVKTNSRLVAECKKALNRLADKNKVQVTWVPGHNEIPG
FT                 NEKADELARAGSAGLSSDFELPISLNAIQTRIHDHFRQIASKEWQRKSDHR
FT                 RSRECWPRYDKKRTRELLSNSKRDISRFTALTTGHWAIGSHAMKLGLPYNA
FT                 ICRSCKQPTEQETPEHLLCFCPALNHIRFRHFGAYQMESLRSIGKLKVSAI
FT                 LGFLADSGWY"
XX
SQ   Sequence 5296 BP; 1556 A; 1320 C; 1437 G; 983 T; 0 other;
     gggccgtcag ccgatagggt gcacaggggg ataaacggat gactgcgtca tctgccgtaa        60
     ctgtgtacac catcggtagt gcgactatac tctccaagcg agggcggctg gaagcaggtc       120
     cccagtcgag gctcgaccgg ggatgctgac caattgtagt cgggcggact taggcagtct       180
     ttaatcaagc ctcccctcaa gtcaggtgtg tgatgcgacc cgtgcacact gacttccagg       240
     ttcgcagctg aggggtaaag ccaagctgtg tctgcacgga gccttcccag ggccaggcaa       300
     ccctgggtcg taagtggcct tgccgcagtt ttggggcgaa gctgcggtcg acctgtcttc       360
     aaagccccaa accccctctg gcccgctgcg cttgccaggt cgagcaaagc gggcgttcat       420
     gaaatgaaaa tgacttctaa aaaccgagct tcggaactcc tgggagagga taaaccccaa       480
     acaatgtcaa cgaaggacga gaaggagatg cagaggccga gactggtcgc tgcatctcac       540
     attgtatcgg agaccgacga agaagagtcg caatccgagg ggagagcgag tagcactccc       600
     caatcgaaac acacaggtgg ggctcagctg agcaccacct cagagatagc gaaaatgtct       660
     caccatcaga gacgagcgag ggtcaacaga gcccgcttcg ttcttggcaa gatagccaag       720
     aatgaggctg agggcaaaac tgaccctcgg gatgccgagg acaaggccaa attccttgcg       780
     gagatcgcgg aatatgagca atacaaagcg gcaaacccgg cggcgttcca gccctcgaag       840
     gcaaagcgaa ttcgctcaca ggaagtgagc gaaagcgcgc ctaagagagc gaaggaccca       900
     cagggtaagc cgcgtgcgac gaactttgtc agccaggcaa agaagtttag cgaggtggcc       960
     agagacagtc tggctatggc actggtggac gagctccatg acgacggtcg cctgctgtcg      1020
     gagaagtggg aggagatcga ggccaagttg gccgacatgg tgaccgacag gttggtcagc      1080
     atgccgaccg gccccatccc ctccttcgac tcctcagacg tggtcagagg gcaccgggtc      1140
     atcaggtgcg acgacgggtt ctcccgaagc ttcctggcgg agtgtgtggc aaagattagc      1200
     gacacatggg ctggccttaa gattaggcta gtccacgcca gggagatccc aaggagaccc      1260
     agagctcgca tctggttacc taagggccaa actgaccatg caagggtgat cgcctgtctg      1320
     aaggcccaga acccagatat ccatacagag gactggacca tcctcagggc agagcaggag      1380
     atgaaggcga gccagccttt cctcctgctg attaaccagc aatgtctgcc ccagctggag      1440
     gcaaacgacc acaaggtccg gtacggcatc aggaaggcca agattaaggt cttcttggcc      1500
     gagccggacg agattctgga ggaggtcgat gacaccaaca aattgttgga cgacatggtc      1560
     atcgacgaca aatctccgga cgccaccccc accaacatcg atgtcgagaa tcgtgcagat      1620
     taacctgaag cgcagctcgc acgcttcagc taatctcacg atccttctaa gggagaggga      1680
     tatcgacatc ggtctgatac aggagccttg gaccagggac gggcaagtcg ctggactgag      1740
     aatccaagga tacacactac tgtgcacaaa ctcggatggt aggtcgaggg cttgcattgt      1800
     aatcaagaat cattttaacg cttttctctg tcccaatctc agcacacctg acctagcagt      1860
     ggccagattc gtggcagcgg atgggagcgg agtcaccata tcatcagcgt acatggccca      1920
     tgacgagccg gccccgcctg agccggtagt caagctgctg cattgggcgg aagcgacgaa      1980
     gacgaccctg gtgctcgggt gtgatgcgaa cgcgaggcac acgctctggg gtagttcgga      2040
     gactaacgaa agaggtgagt cactctttga caatattata tgtagaaacg taacgatatg      2100
     caataagggt aataccccga cctttatctt tccgagcacg gaaaattttc aaggttggga      2160
     agaggtgtta gacctcacat tacatgtaga gcataataat tacagggtcg agaactggag      2220
     ggtatcgaca gaacactcct tctcagacca taggtacatt ttctttgaaa taacgacacc      2280
     agttaagaaa caggtgccaa gaagaaaccc ccgtaagacg gattggaaca atttcagcga      2340
     aattgtccga tctaaagtaa acggcaggag gatcaagaca atatccactg caaaggcact      2400
     cgacaaggag gttgaggacc taacgaatat tctgaacaac gccttcaaag agacttgtaa      2460
     gctaacattc tcgaagaagc aatacccacc gtggtggaca aaggaattaa gcgagctcag      2520
     gaagagcgcg agaaagtcct ttaaccacag ctatgcaacc cgggattggg gaacatacaa      2580
     agaagcacaa aaaatttaca agaaggcagt atacaaggcc aagaaagagt cgtggcaaaa      2640
     ctactgcgag tcactggaag gcataaagga cacggcgaga gtaagcaaaa tcctcgccaa      2700
     agggcacata agccctaccc tgatcaacag agcagacggc tctgctacga cgacaattga      2760
     ggagtcacta gagctactag ttgacaccca cttcccagga agcctaagag tgagctcgga      2820
     acccgaggag ggaacgagct ctcaaatgga tacacctacg aaagacatca ttaccactga      2880
     gcgaattcag tgggcaatag attctttcga taagtataaa agcccgggcc cagacggctt      2940
     aataccggca atgctacaat cagccaagga tagtatttgc aaatggctaa aagccattta      3000
     cgaagcttgt ttaagactga cgcacgtccc actgctgtgg agagaggcta aagtcatttt      3060
     tataccgaaa ccgggcagaa gggggcacat cctagcaaag gattatagac cgataagtct      3120
     cacctccttc accctgaaga cactagagag actcctggac gtccacatcc gagagtctct      3180
     agaaggacat caactctcgg atgcgcagca tgcgtaccgc agaggaaaat caacggaaac      3240
     agcgctacac gtagttgtac atcatgtcga gaagacatta caacacaaac aatacacgat      3300
     ggcagccttc ctagacatcg aaggcgcgtt caataacgtg aaccccgact ctatcctggg      3360
     ctccctcaac ttgctaggta ttgagagagg catcagagag tggatcggag tcatgctaaa      3420
     gagcaggacg atcacagccg aactgagtgg cactcacctc acgcggactg tgaagagagg      3480
     cacacctcag ggcggggtac tatcgcccct actctggctc acaaatatga acgccatatt      3540
     gacagacctc aatacgggtg gagtcaaagc agttgcatac gcggacgacg tagtactgct      3600
     agtatcagga ccataccctg acgttattag cgaaataatg acgggtgcgc taggtcgttt      3660
     aaacaaatgg gcagaaacct gcggactagg tatcaacccc actaaaacgg aacttatgct      3720
     cttcacgcga agaactaaga taccaccctt caacatgccc agtattaacg gcatggagct      3780
     aaaactatcg gagcgagcga agtatctagg agttattctg gataaaaagc tctcatggaa      3840
     agataacatt gcagaaagag taaggaaagc aagcattgca ttctactcct gcaggaaaat      3900
     gtttgggaac aaatggggac tgcacccaaa gataattcta tggctctaca ctgcagtggt      3960
     acggccaatt ctaacatacg gagccctagt atggtggccg gcactaacta gggcttacaa      4020
     cagaacgaag ctgacacgga tgcaacgggc agcgagtgcg ggggcagtgg gtgcaatgcg      4080
     ctcatgcccc gcggctgctc tcaacgccat cctagatata atgccgatag agctgttcgt      4140
     gaaggacact gcggcacaga gcgcagtaag actgaaggcg agcaattgct ggagggacta      4200
     cggcgccggg cacggcaaga tccttgcaaa cagcggcatt aacacagacg ttaagaccga      4260
     ctacatgatc gcggaaatga aattcgggaa cgcattctcg acatcatacc catcaaggga      4320
     tgactggagt aggggcagag tagtagtgga gaacgaggtg tccctctaca ccgatggctc      4380
     aaaaatgagc tgcggcgtag gggctgggat cttcgctgaa aattggggaa ttgaaaaggc      4440
     tttcaatctc tctaactcag cgacggtctt tcaggctgag ttactagcca taagggaagc      4500
     agtcgaactt tccttaaggc aggacctcag gggcaaaaga gttcgaatct actcggatag      4560
     ccaagcggct ataaaatccc tatctgccgt gaaaacaaac tcacgactag tggcagaatg      4620
     caagaaggcc cttaatagac ttgccgacaa aaataaggta caagtaacat gggtaccggg      4680
     acacaacgag atcccaggta atgagaaggc agacgaacta gcccgtgcag gctcggcggg      4740
     gctaagttct gacttcgaat taccgatctc cctaaacgcg atccagacaa ggatccatga      4800
     ccactttaga cagatagcca gtaaagaatg gcaaaggaag agcgatcaca gaaggtcaag      4860
     ggaatgttgg ccgaggtacg acaaaaaacg aaccagggaa ctgctatcca acagcaagcg      4920
     ggatatcagc aggttcacgg cactcaccac gggacattgg gcgatcggtt cgcacgcaat      4980
     gaagttggga ctgccataca acgcaatctg tagaagctgt aagcaaccta cagagcaaga      5040
     gacaccggaa catctgctct gcttctgccc agcgctaaac cacatcagat ttcgccactt      5100
     cggtgcctac cagatggagt cactgagaag cataggaaag ctgaaagttt cagcaatcct      5160
     aggtttcctt gctgactctg gatggtactg atagtgtatt acaacaaaaa agaaacagag      5220
     ggtgtggatc aaaaaggagc taagctctaa ttggaggccc cagccttggg cctcaccact      5280
     gtaacctacc taccta                                                      5296
//
ID   Loa-1_DSuz  repbase;    DNA;    INV; 5576 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   06-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5576
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 619-619 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1883
FT                 /product="Loa-1_DSuz_1p"
FT                 /note="DUF4780."
FT                 /translation="MENLTNTKTKDCTRQEPDTLKKSEVVTNDERKSKITA
FT                 PTTPVHVTSTPAKASEQRSRLSPTRHSDKPKPPTSVGVANQPLQPEGSAKA
FT                 GLVVSTRAKEFKRVPPNQAGPLERRKASRILKRLATNPIREDQTSKLDYLK
FT                 IQEDIAWAKAVIPDFDIAMTTSNSNKRERSMESAQPASKKAKVTNRGTWSR
FT                 SFAEVVKDRKIIGVIDQSVEGGRIPRNQWGLVRRALASVALKVLDENPGPP
FT                 PDCTDAGWYQGNVKLIACEDERSAALYKAAITKVGEVYPGAKLAVCEAADI
FT                 PSRPRARVWLPSEPSEPEAILSLLTRFNPKLPTDGWKVVKVEKTERVTMSV
FT                 VILLNQACLEPLAAQQHRVNYGFDKVQLRIYDTDKLAADNLAACASYEPPS
FT                 DDEPDHEEATLTGYVSTDSELTESLKQLCTQDTTRPGRSVLQDIAEEAEGT
FT                 QPDPSPKDGAVSAN"
FT   CDS           1864..5460
FT                 /product="Loa-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MVQFLQINLHHSKAASAALLTRLATGNIDVVLIQEPW
FT                 IVGNNICGLSTPLYKLFYTKDKGKTRTCILTKTHFNTFLIPQFSEGDLTTV
FT                 RLELNEHTHHTIASFYLAHDYEGPLPNTTTQQLIRTHSSKELILGGDANSH
FT                 HTQWGSTNTNERGELLYDYLLQSNLFICNKGNDPTFITRNRREVLDITLIS
FT                 DPLLNQLEAWKVGIEHSFSDHRYIEFTISLDCPPAENITNLRLTNWGYYKN
FT                 LLNRNLHAPPTHIRNRQELDSLVNTFTDICGEALKRACPSRTVKTKHKPPW
FT                 WNATLANLKRECRTYFNRAKYNNSESSWNLYHTKLSLYKKEIRISKRRAWA
FT                 NFCSSIESTAEASRLRRILAKAPATIGYLKTNADSWTENSQETLELLLDTH
FT                 FPKNTHVVEDLHIEENLDDQSIDNISNPGRIQWAVNSFKPFKSPGPDGFFP
FT                 AQLQRTLDMSLPWLTAIFHGCLALNHIPTRWLDVKVIFIPKAGKPSHTNPK
FT                 DFRPISLSSFLLKTLERLIDTHIRLTIDHSLLSDAQHAYRKGRSTDTALHS
FT                 LVYSIERGFRNKEYSLAAFLDIEGAFNNVTPTAITGALTELGIERPIVGLI
FT                 HTMLTSRVVHSTMGSALSTRNVSRGTPQGGVLSPLLWVLVVNKLLSLLEEA
FT                 GTKVVAYADDVVILLQGKFPQTLCNLMETALSTLSRWTAGCGLGVNPEKTE
FT                 LVLFTRKYKVPILVPPKLHQTRLTFSNQAKYLGVILDKKLLWTDNILDRTR
FT                 KAAIALFACKKAIGRKWGFSPMIVHWLYTAIVRPILLYGNIVWWPSLDKNC
FT                 NLRILHKIQRSAELCISGALRTTATEALNTILDLQPLDLLAKSWASATALR
FT                 LREAAAWTTGSTGHSIILSKHSPLPRYTDYVPPIVNFERRYKIHIPTRSDW
FT                 DNLPHQFVNAVNIYTDGSKLNSQTGGGVFSPELDIKVSFRLPDHCSVFQAE
FT                 VMAIQEATTHLNTSVHKDSDIFIFSDSQAALRALDSYTTSSKTISECRKSL
FT                 NEMATHLRINLIWVPGHRNIEGNCIADELARQGTTADILRDKDTVGMPMAT
FT                 CKLHLRQRLYTLSNNRWNSISTCHNSRLTWPNYNTKRTKTLLQCSREDIST
FT                 LLNALTGHCLIGTHAIRLGLSNHDFCRSCKEIDEEESIEHLLCFCPAHNLK
FT                 RFQTLGSYTLPNLAAIQDVSIQKLLCFLRRTEYFAKAENP"
XX
SQ   Sequence 5576 BP; 1612 A; 1612 C; 1262 G; 1087 T; 3 other;
     cggccaaaga gctagtggga tggctctgag ggcgccgagc tgaaggctac cgaacgggtc        60
     gcaggttgcg gatagcgagc gccctggttc tccagggtag ctacgaataa gcgtggaagt       120
     tggacacggc ccggctacca ccaagccccc aacacgaagc gcaaataagt agccccggac       180
     agtcagcggg tatctgcgcc gtagcagtac cgacgtcgcg cttgtgctgc cgcctccgac       240
     aaatagctca cacacacccc twcccacack ctctgwacct acctcttccc tacccacaca       300
     actcatctca ccccgggctg gactaaggtg tcactcgtac cgtgccgaga gtcaatctgg       360
     ctgggagccc gagtcatcaa ataactcagt ctcaaacggt gagctcaggc aagtggcgac       420
     cgcctgttct aagtcagcct tacccgggta cggcggatct ctgcccgggt ggacctgtcc       480
     tttctccgca gctcgtggga tttaacatgg agaatttaac aaatacaaaa acaaaagact       540
     gcaccagaca agagcccgac actcttaaaa agtcggaagt cgtaaccaac gacgaaagaa       600
     agagcaagat cacggctccg accaccccag tccacgtgac gtctacccct gccaaggcca       660
     gcgaacaacg cagccggcta agcccaactc gccatagcga caagcccaag cctcccacca       720
     gcgtaggtgt ggctaaccag ccactccaac ctgagggtag cgctaaggcc ggtctcgtgg       780
     tgagtaccag ggcaaaggag tttaagaggg taccacctaa ccaggcagga cctcttgaac       840
     gaaggaaggc ttctaggatc ctcaaacggc tggccaccaa tccgatacgt gaggatcaga       900
     cgtcgaaatt ggattacctg aaaatccaag aggacatagc ctgggcaaag gcggttatcc       960
     cagacttcga catcgctatg accaccagca acagcaacaa gcgagagagg tcgatggagt      1020
     cagctcaacc agcgagcaag aaggctaagg taaccaaccg cggcacatgg tcgagatcct      1080
     ttgcggaagt ggtaaaggat cggaagatca ttggtgtcat cgaccagagc gttgaaggcg      1140
     gtaggatccc aagaaaccaa tggggtctgg ttagacgggc ccttgcgtca gtggccttga      1200
     aagtgctgga cgaaaaccca ggcccgccac ccgattgcac agatgcaggg tggtaccagg      1260
     gcaatgtaaa gttgatcgcc tgcgaagacg agagatcggc agcactctac aaggctgcaa      1320
     ttaccaaggt cggcgaggtc taccccgggg ccaagctggc agtttgcgag gctgcagaca      1380
     tcccgtctcg accgagagcg agggtgtggc tgccgtcgga accatcggaa ccagaggcta      1440
     tactcagcct gctgaccagg ttcaacccga aacttccaac agacggttgg aaggtggtca      1500
     aggtggagaa aaccgagcgc gtcaccatga gcgtggttat cctcctgaac caggcctgct      1560
     tggaacccct cgcagcccaa caacaccggg tgaactacgg gttcgataag gtgcagctac      1620
     gcatatacga caccgataag ttggcggcag acaacctggc tgcctgcgcg tcgtacgaac      1680
     ccccgagcga cgacgaacca gatcacgaag aggccaccct caccggctac gtgtcaaccg      1740
     actcggagct gacagagagc ctgaagcagc tgtgcaccca ggacacaacc cgaccagggc      1800
     gctctgttct ccaggacata gcggaggaag cggagggtac ccagcccgac cccagtccca      1860
     aagatggtgc agtttctgca aattaacctg caccacagca aggcagcatc cgctgccctc      1920
     ctcacccgcc tggcaacagg caacatagac gtagtcctca ttcaagagcc atggattgtt      1980
     ggtaacaaca tctgtggctt atcaaccccc ctatacaagc ttttttacac caaggacaag      2040
     ggtaaaacca gaacctgcat tcttacaaag acacacttta atacatttct tattccacag      2100
     tttagcgaag gcgacctcac cacggtcaga ctggagctaa acgaacacac ccatcacacc      2160
     atagcatcat tctatctggc tcacgactac gaagggccac taccaaacac cactacacaa      2220
     caactcatac gcactcactc atctaaggaa ctcatcctgg gtggggacgc taactcacac      2280
     cacacacaat ggggaagtac aaacaccaac gaaaggggtg agttactcta cgactatctc      2340
     cttcaatcaa atctattcat ctgcaacaaa ggtaatgacc caactttcat cactagaaat      2400
     aggagggaag tactagacat tactctaata tctgatcccc tacttaacca gctagaagcg      2460
     tggaaggtgg ggatcgaaca ctcattctcg gaccaccgat acatagaatt tacaataagt      2520
     ctagactgtc ctcccgccga gaacatcact aatctaagat taaccaactg gggatactac      2580
     aaaaatctcc tcaacaggaa cctacacgct cctccgacac acatacgcaa ccgtcaagaa      2640
     ttagatagcc tagttaacac ttttactgat atctgcggtg aggccttaaa aagggcttgc      2700
     ccaagcagaa cagtcaaaac aaagcacaaa cccccttggt ggaacgcaac cctggcgaac      2760
     cttaaaagag agtgtagaac ttacttcaat agagctaaat acaacaatag cgaatcctcc      2820
     tggaatttat atcatacaaa actaagccta tacaaaaagg aaattagaat atcaaaacga      2880
     agagcctggg ctaacttctg cagtagcata gaatctactg cggaggcatc cagactcaga      2940
     agaattctag ctaaagctcc agcgaccatt ggctatctta aaaccaatgc tgacagctgg      3000
     acggaaaaca gtcaggaaac ccttgaacta ctgttagaca cccacttccc taagaacacc      3060
     catgtagtgg aggacctcca catagaggag aacttagacg accagagtat tgacaacatt      3120
     tcaaaccctg gccgcattca gtgggctgtc aactctttta agcccttcaa atcacccggc      3180
     ccagatgggt tcttcccggc ccagctacaa cggacactag atatgtccct accctggctg      3240
     acagccatct tccacggctg ccttgctcta aaccatattc caacaaggtg gctggacgtt      3300
     aaggtaattt ttataccgaa agccggcaag ccctcccaca ccaacccaaa ggacttccgc      3360
     ccgattagtc tctcttcctt cttgttgaag accctggaaa ggctaattga cacccatatc      3420
     agactaacca tcgaccatag cctactctct gacgcacagc atgcgtaccg taagggtaga      3480
     tcaacagata ccgccctcca ctctctagtg tacagtatag agagaggttt ccgcaataag      3540
     gaatactctc ttgcagcgtt tctagacata gaaggcgcct ttaacaacgt caccccaacg      3600
     gcgattactg gtgctctgac tgaactgggc attgagcggc ccatagtggg actcatacac      3660
     accatgctaa ccagcagggt agtgcactcc actatgggat cggccctctc gaccaggaat      3720
     gtcagtagag gaaccccaca agggggcgta ctctcacctc ttctatgggt tttggtggtc      3780
     aacaaactgc tatcacttct agaagaggcg ggcacaaaag tggtagccta cgcggatgac      3840
     gtggttatcc tactgcaggg caaattcccg caaacccttt gtaatctaat ggagacagcc      3900
     ctatccaccc tttcccggtg gacggctggc tgtggactgg gagttaaccc ggaaaagacc      3960
     gaactagttc tctttacaag gaagtacaag gtaccaattc tagttccccc aaaactacac      4020
     caaacgcgcc taacctttag caaccaagca aagtacctag gtgtcatcct tgacaaaaag      4080
     ctcctctgga ctgataacat cctagatcgc acacgcaaag cggccatagc cctcttcgct      4140
     tgtaaaaaag ccatagggag gaagtggggt ttctccccca tgatagttca ctggctatat      4200
     actgcaatag tcaggcccat tctcctctac ggaaacatcg tttggtggcc ttctctagat      4260
     aagaactgca acctccggat ccttcacaag atccaaagga gcgcagagct ctgcatcagt      4320
     ggggcgctgc gcactaccgc caccgaggca ctaaacacaa ttctcgatct ccaacccctg      4380
     gacctacttg ccaaaagctg ggcatctgca acagcgctga ggctccgtga agcagcggca      4440
     tggacaacgg gctccacggg tcactccatt atcctatcaa aacattcacc cctaccacgt      4500
     tatacagact acgtcccacc catagtcaac ttcgaaagaa gatacaaaat tcatataccc      4560
     acccgttcag actgggacaa cctcccacat caattcgtaa acgccgtcaa catatacact      4620
     gacggctcca agcttaactc ccaaacaggt gggggagtct tctcccccga actagacata      4680
     aaagtctcat tccgcctacc agaccactgt agtgttttcc aagcggaagt gatggcaatt      4740
     caggaagcca ctacccacct gaacacgtct gtacataaag acagtgatat cttcatattc      4800
     tcggatagtc aagctgccct cagggccctc gactcctaca caacgagctc aaaaacaatc      4860
     tctgaatgcc gcaaatctct taacgagatg gccactcatc tgagaatcaa cctcatctgg      4920
     gtgcctgggc accgcaacat tgagggcaac tgcatagcag acgagctggc aagacagggg      4980
     acaaccgccg atatccttcg tgataaggac acggtaggga tgcccatggc tacctgcaag      5040
     ctccatctca ggcagagatt gtatactctt tccaacaacc gttggaactc aatctcaaca      5100
     tgccacaatt ctagactcac atggccaaac tacaacacga aaagaacaaa aactctccta      5160
     caatgtagca gggaggacat ctccactctc ctaaatgccc tcacgggcca ctgtcttata      5220
     gggactcatg cgataaggct gggtctaagt aaccacgact tctgccgcag ctgcaaagag      5280
     atagacgaag aggagagcat cgaacacctc ctatgcttct gcccagcgca taacctaaag      5340
     cgctttcaaa ccctaggtag ctacacactt ccgaaccttg cggccattca ggacgtaagc      5400
     attcaaaaac tactatgttt cttaagaaga acagaatact tcgcgaaggc agaaaaccca      5460
     tgagctaggg aaacggatct ttcagagatc atgtggtatc acaaggggcc cattgtggcc      5520
     taagtgaggg gactaatatt tagtctccaa ccactcctac ctaacctaac ctaact          5576
//
ID   Loa-1_DT    repbase;    DNA;    INV; 5062 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.08, Created)
DT   31-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5062
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1713-1713 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           6..761
FT                 /product="Loa-1_DT_1p"
FT                 /translation="MATPCSTYRLTRVPRISARADLSPSPQLVGPNMESLN
FT                 KNKXKSETGTLNKPDTAMTNVGSVANTSKAQKGPHPKQGVTGDRKTVANAS
FT                 AMRASAPKPAVDAAKSIGSTAGVQKFTYAERRTAAQTLRSHARSKVATPSP
FT                 EWLKKVEWARTVFPNYGQGNTQQEGAQAKRQRSVELPGPSAKRSKIQPSVS
FT                 FAEITKDRVLLGLIDRGNPENRIPKTNGRRLSPSCLSYACVWCARSPVHRL
FT                 AAWTRAGTRAV"
FT   CDS           1335..4922
FT                 /product="Loa-1_DT_2p"
FT                 /translation="MSLRLLQINLHHSKAASAALLLRLAKGEADVVLVQEP
FT                 WIAGGRVAGLGTKDYKLMLDPKQGKIRTCILAKRHLSTFLLRNYSNGDNTA
FT                 ISLELQNGSIRMLSAYMAFEKVEPPDALVRGLVQECEELKKGLVIGCDANA
FT                 HHTQWGCPINNDRGESLFDFILNSNLFLCNRGNTPTFITKTCQTIIDLTLA
FT                 SDSLVSTVTNWAVSDEHSFSDHRFIETTLSLVSPAPVSFANPRRANWXKYK
FT                 EILSSFLPREPPESTLCTQELDNIVNKFTEACNAAFTAACPLGKPRGKKKP
FT                 PWWTQQLSILRAKCRSLFNRAKATNEDISWQSYKKELATYKKAIRKEKRTA
FT                 WQNFCSDIEKTTDAARLRKILSKTAVSLGYLQKADGSWSDSSEESLNLLLD
FT                 AHFPGSLQTGHPPGRHTGEGINLNLLLSDRNINWSIHSFKPYKSPGPDNIT
FT                 PAXIQQAGQLAINWLRKIFQTILAVGELPTAWRETKVVFIPKAGKATHTTA
FT                 KDFRPISLTSFLLKILERLIGLHIRDIIDPTQISEAQHAYTKGKSTESALH
FT                 LVVSNIEKSLSIQEYTLIAFLDIEGAFNNVLPTAITESLTELGVEPPLVGL
FT                 IHKLLISRLVTATLGTSTQTRLVNRGTPQGGVLSPLLWNIAVNKLLRILEG
FT                 GGCKIVAYADDVAIIFNGKYPQTLCDLMTAKLKILSEWTTKNGLGVNPSKT
FT                 ELVLFTNRYKIPKLNPPTLNNCNLSFSEHARYLGLVLDKRLKWGLNNQERT
FT                 KKATIALYSCKKAIGLRWGMSPKIVNWIYTAVVKPILLYGVALWWTALHKQ
FT                 CILTPLNKVQRMAALCISGALRTTPNEALNAILNLQSLDLAGMERAKSAAI
FT                 RLRDTGQWKAQLYGHAKILQHDXSIPPKTDLCKTREYSHTPFEALIPGREA
FT                 WDRGRPGSIDAICLYTDGSKLDGHVGGGIYSEQLEIRQSFRLPDHCSVFQA
FT                 EVYAIMEALVCLRGLNTQNRHINIYSDSQAAIKSIYSTNTNSRTIADCRKS
FT                 LHEMASQFTVSLIWVPGHRDIVGNCIADELARQGTTIPLLPGKENVGMPMA
FT                 TCKLIIKNHFXKLANTHWQNTPQCRISHQTWPAINNKKTSELLNFSRTECG
FT                 MLIRVLTGHWLVGAHAGRLKAPKNDFCRSCRDEEEEETVEHLLCSCPALCR
FT                 LRLKHLGYPFINDLTEISQTNLKSLSSFIKSSGWGTC"
XX
SQ   Sequence 5062 BP; 1520 A; 1294 C; 1226 G; 1007 T; 15 other;
     gggagatggc gaccccctgt tctacctacc gccttacccg ggtaccgcgg atctctgccc        60
     gggcggacct ttccccttct ccgcagctcg tgggaccaaa tatggaatca ttaaataaaa       120
     ataaaaanaa atcagagacg ggtactctca acaaacccga cactgcaatg acgaacgttg       180
     gctccgttgc aaacaccagt aaggctcaga aagggcctca tcccaaacaa ggggtgacgg       240
     gagacagaaa gactgtcgca aacgcctccg ctatgcgcgc atctgcgcct aaaccagcgg       300
     tagacgcagc aaagtcgatc gggtcgaccg ctggtgttca gaaattcacg tacgcagaga       360
     gacggacggc cgcccaaacc ctgcgctcgc atgccagaag caaagtcgcc acgccttcgc       420
     ccgaatggct gaagaaggtn gagtgggcca ggacggtgtt cccaaactat gggcaaggaa       480
     acacccaaca ggaaggtgcc caggcgaaga ggcaacgctc cgtagagctg cccggtccgt       540
     cggcgaagag atcgaagatc cagccgtcgg tctcctttgc cgagatcact aaagatcggg       600
     tccttctggg actcattgac aggggaaatc cggagaacag gatccccaaa acaaatggaa       660
     ggcggttgag tcccagctgt ctctcatatg cctgcgtatg gtgcgcgaga agcccggttc       720
     atcgccttgc tgcatggacg cgggctggta ccagggcagt gtaaaggtgg tggcctgcga       780
     caatcagcga tcagctgacc tatacaagca ggcggcagcg cagctaggng aagtctacga       840
     nggggcgaac atagtcgcac tagattggtg tgacgtcccc agtagacccc gagccagaat       900
     ttggctccca gcagctatcg natcaccgga ggacatcctc tatatgttgc aagagtgcaa       960
     cccacatctc cccacaaaag actggaaagt cgtnaaggtg gaggagcacg caggtgacgt      1020
     gaaccaggcg atcgtggtgc taaacaagga gtcggtcgct cccatagagg ctgctcgggg      1080
     agcgctcaat tatggcttca gcgccataca catnaagatn tacaaagggg actccagttc      1140
     caagggaagc cctgccggca acccagctga gcaggtgctt gcggaggaag tggaggcccc      1200
     tggtatgccg gaggacggct actcaaccga ctcgtcgctg agcagagaga tgcgagcgct      1260
     gggaccggca atcgangaag tggacctgag cgattcggag gccgacgtta ctgtggtgga      1320
     ggttgcagct ggggatgtcg ctaagactcc tgcagatcaa cctacaccac agtaaagcag      1380
     cgtccgctgc cctattgctt cgccttgcca aaggcgaagc cgacgtggtc ttagttcagg      1440
     aaccctggat agcaggaggc agggttgctg ggctaggaac aaaagactac aagcttatgc      1500
     ttgaccccaa acaaggtaaa attcgaacct gcattttagc caaacggcat cttagtacat      1560
     ttctgcttcg caattacagc aacggagaca acacggcaat aagcctggag ctgcaaaacg      1620
     gctccataag gatgctatcg gcctacatgg cttttgaaaa ggtagaaccc ccagacgcgc      1680
     tagtcagagg actggtacag gaatgtgaag agcttaagaa aggtttggtg ataggatgcg      1740
     atgcaaatgc ccaccatacc cagtggggct gccctatcaa caacgacaga ggtgagtctt      1800
     tatttgattt cattctaaat tcgaacttat ttctttgtaa caggggcaat acccctactt      1860
     ttataacaaa aacgtgccaa acgatcatag atctaaccct ggcatcagat tcactcgtaa      1920
     gcacagtcac aaactgggct gtctccgacg agcactcatt ctcagatcac aggtttatag      1980
     agacaacttt gtccctagtg tcacctgcgc cggtcagctt tgccaacccc aggcgggcaa      2040
     actggaanaa atacaaagaa attctatcga gcttcctccc cagggagcca ccagaaagca      2100
     ctctttgcac tcaggagcta gataatatag taaacaaatt cacagaagca tgcaacgcgg      2160
     cattcacagc tgcatgcccg ttagggaaac caaggggaaa gaaaaaacct ccttggtgga      2220
     cccagcaatt atcaatcctc agagccaaat gcagaagcct gttcaacaga gcgaaagcta      2280
     caaatgagga cattagctgg caaagctaca aaaaggaact agccacatac aaaaaggcca      2340
     tcagaaaaga gaagagaact gcgtggcaga acttctgctc ggatattgaa aagacaacgg      2400
     atgccgcaag gctcagaaaa atactttcta agacagccgt atcgttgggc tatctccaaa      2460
     aggctgacgg atcatggtcg gactctagtg aagaatccct aaacctactc ctagacgctc      2520
     acttcccagg gagcctgcaa acaggacatc ccccaggaag acacactgga gaaggaataa      2580
     acttaaacct cctactatca gaccgtaata taaactggtc cattcatagt tttaaaccgt      2640
     acaaatcgcc gggaccggac aatataacac cggcacanat tcagcaagca ggacagctag      2700
     ctataaactg gctgagaaaa attttccaga ccattcttgc agtaggagaa ctacctacag      2760
     cgtggcggga aacgaaagtc gttttcatcc ctaaggcagg gaaggccacc catactacag      2820
     cgaaggattt tagaccgata agtctgacat cattcctgct aaaaatctta gaaagactga      2880
     taggtctaca cattagagac atcattgacc cgacgcagat atcagaggcg caacacgcat      2940
     acaccaaagg taagtcgacc gaatcggcgc tacacttggt agtaagcaac atcgagaaat      3000
     cactcagtat acaagaatac accttgatcg ccttccttga catagaagga gctttcaaca      3060
     acgtgcttcc cacggcaata acagaatccc tcactgaact aggggttgag ccaccgctgg      3120
     tggggctgat ccacaaattg ctgataagca gactggtcac ggccacacta gggacctcna      3180
     cccagactag actagtgaac agaggcactc cgcaaggagg tgtactatca cccctcttat      3240
     ggaatatcgc ggtaaataaa ctactgcgga ttctcgaagg aggaggctgt aaaatagtgg      3300
     catacgcaga cgatgtcgct atcatcttta atggtaagta tccacaaacg ctatgcgatc      3360
     ttatgaccgc aaaactaaag atactatcgg aatggactac aaaaaacgga cttggggtaa      3420
     atccctcaaa aacggaacta gtccttttta caaatagata caaaatccca aaactcaacc      3480
     cacccacttt aaacaactgt aatctctctt ttagcgagca cgcaagatac ttggggttag      3540
     tattagataa gcgtcttaaa tggggcttaa acaaccaaga gagaaccaag aaagcgacca      3600
     ttgcacttta ctcttgtaaa aaagcaatcg ggctaagatg gggtatgtcc cctaaaatcg      3660
     tcaattggat atacacagcg gtagtcaagc caatcctact atatggagtg gctctgtggt      3720
     ggaccgctct acacaaacaa tgtatcctaa ctccccttaa caaagtacag cgcatggcgg      3780
     ctttgtgtat tagtggagcc cttcgaacta ccccaaacga agcgctgaac gcgatcttga      3840
     acctccagag cctggactta gcaggcatgg aaagggcgaa atcggcagcc attcgactaa      3900
     gggatacggg gcaatggaaa gcccaactnt atggtcacgc taagattctt cagcatgaca      3960
     antcgatccc gccaaaaacg gatctatgta aaacccgtga atacagtcac acgcccttcg      4020
     aagctctgat cccaggtagg gaagcatggg atcggggccg accgggctca atagacgcaa      4080
     tctgtttata tacagacggc tccaaactag acggacacgt aggtggaggc atatactccg      4140
     agcaattaga gatcaggcag tcattcagac ttcctgacca ctgcagtgtc ttccaagcgg      4200
     aagtgtatgc tataatggaa gcactcgtct gtttaagggg cttaaacacc cagaacagac      4260
     acataaacat atatagtgat agccaagcgg ctattaaatc aatctactcg acgaatacaa      4320
     actcccgaac aatagcagac tgtcgcaaat ctctccacga gatggctagt cagtttactg      4380
     tcagccttat atgggttccg ggtcaccggg atatcgtagg caactgtata gcggacgagc      4440
     tagccaggca aggcaccacc atacctctcc ttccaggaaa ggagaatgtt ggcatgccta      4500
     tggctacctg caagctaatt attaaaaacc atttcngcaa attagccaac actcattggc      4560
     aaaacacacc gcagtgccga atctctcacc agacatggcc tgcaataaac aataagaaaa      4620
     catcggaact acttaatttc agccgcacgg agtgcggcat gctaattcga gtactcacag      4680
     gccactggct cgttggcgca cacgccggca ggctaaaagc ccctaaaaat gatttttgta      4740
     gaagctgcag ggatgaggaa gaagaggaaa cggtggaaca cctactctgt tcgtgcccag      4800
     ccctatgcag gcttagactg aaacacttag gatatccttt cataaatgac ctgaccgaaa      4860
     tatcgcagac taacctgaag agtctaagct cttttattaa atcctccgga tgggggactt      4920
     gctgatcgac caacctacag gctgactctt aacggatagg ggacccaaaa atagagatca      4980
     tacggtatca caatggaccc acagaggtct aagtgtgcca ggctatagtc tggcagccgt      5040
     cctaacctaa cctaacctaa cc                                               5062
//
ID   LOA-1_DYa   repbase;    DNA;    INV; 5042 BP.
XX
AC   .
XX
DT   07-JUN-2011 (Rel. 17.09, Created)
DT   07-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5042
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1932-1932 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
CC   It likely contains an internal duplication.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..1752
FT                 /product="LOA-1_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAYERQEPPDELVRRLVEDSEKQNIGLLIGCDANAHH
FT                 TQWESTDTNDRGESLFNFIFSSNLFICNKGNDPTFIIKNRKEVIDLTLVSK
FT                 PLLETVTHWRVLDKHSFSDHRYIETTLTINPSKPAVFTNPRKTDWQKYKNI
FT                 LREKIPTDPPPYPQTISSLNELVSIFTETCNYALKKACPNSKPKRKRKPPW
FT                 WSAELSPLRIDCRTLFNRAKAGNEEALWTAYKRALANYKKTIRKAKRSSWH
FT                 SFCSEIENTTEAARLRKILSKSATTLGYLKRADGSWTSTSEESLEILLDTH
FT                 FPGNSQNALTPQQTNATLASIELCIDPKVLHWAIHSFKPYKSAGTDKIIPA
FT                 QIQHAGNIAINWLLDIFKRSLLLGHLPQSWLESRIVFIPKAGKPSHTTPKD
FT                 FRPISLSSFLLKTLERIIGLHLRSTLNPSLITDTQHAYKKGKSTETALHSL
FT                 VSKIEKSMSQKEYALVAFLDIEGAFNNVIPTAITGALTDLGVDRHLVGLIN
FT                 QLLTCRKVMSSLGASTLTRHVSRGTPQGGVLSPLLXNIAVNSILRDMEGGG
FT                 CGDPLF"
FT   CDS           join(2127..3131,3258..4925)
FT                 /product="LOA-1_DYa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="IRFAKLRQGSPQTTQAHADPAAARRPHPPRTERSQDA
FT                 PSDLAGKADXAAATVESQPSPFRVLSSYIAYERQEPPDGXVRRLVEDSEKQ
FT                 NIGLLIGCDANAHHTQWESTDTNDRGESLFNFIFSSNLFICNKGNDPTFII
FT                 KNRKEVIDLALVSKPLLETVTHWRVLDKHSFSDHRYIETTLTTNPSKPAVF
FT                 TNPRKRDWQKYKTILREKIPTDPPPYPQTISKRSSWHSFCSEIENTTKAAR
FT                 LRKILSKSATTLGYLKRADGSWTSTSEESLEILLDTHFPGNSQNALTPQQT
FT                 NATLASIELCIDPKVLHWAIHSFKPYKSAGTDKSYPHNPTCGKKNHRPASE
FT                 INSQSSLITDTQHRIIAYADDVAIIFTGKYPQTLCDLMSEKLSVLSSWTKN
FT                 NGLGINPSKTELVLFTRKYNIPDLVPPILNNQRLSFSSSARYLGVILDRKL
FT                 NWNLNLTDRYKKASIALFTCKKAIGLKWGMTPYIVNWIYTAIVRPILLYGV
FT                 VVWWPALKKKSSIKMLAKMQRAAALCISSALRTTPNEALNAILNLPSPELA
FT                 GMEQATVAAIRLRDTKQWNPQEAGHSCILKNIQIVPSRTDYCTPTEYIQTP
FT                 FNTIIPERDDWNSRTPGPQNAICFYTDGSKLQNRVGGGVYSEQLGLRTSFR
FT                 LPDHCSVFQAEVAAIREALKHLKSLKPESSHVNIFSDSQAAIKSIGSISSH
FT                 SKTVSNCRSSLHEMTQPGHRDIEGNCIADELAREGTTAPLIQEMEGMSMPL
FT                 ATCKLLLRENLNRNKQTIWENTTHCRLTRQIWPKISSKRTSKLLRLTRANL
FT                 STAMRVITGHWLIGTHARRLNAPYNDFCRSCRDEEMEETVEHLLCHCPALQ
FT                 AKRLAQLGSRFLIDTSDLSDTDPHRIQKFTSASGWGNC"
XX
SQ   Sequence 5042 BP; 1627 A; 1422 C; 1039 G; 948 T; 6 other;
     agcatttttc tgctccataa ttacagcgat gcagacaacg cggcagccac cgtggagagt        60
     cagccatctc cgttccgagt gctgtcatcg tacatggcct acgaaaggca agaaccgccg       120
     gatgagctgg taaggagact ggtagaagac agcgaaaagc aaaacatagg cctactaata       180
     ggctgtgatg ctaacgccca ccatacacaa tgggaaagta cagacacaaa cgaccgcggt       240
     gagtctcttt ttaactttat ctttagttca aatctcttca tatgtaataa aggtaatgac       300
     cccaccttta tcattaagaa ccgaaaagag gtaatagacc taactctcgt ctctaaacca       360
     ctattagaga cagtaactca ctggagggtg ctagataagc actctttctc ggaccacagg       420
     tacatagaaa cgaccctcac aatcaacccc tcaaaaccag cagttttcac aaacccaagg       480
     aaaacagact ggcaaaaata caaaaatatt ttaagggaaa aaatcccaac ggatccccct       540
     ccataccccc aaacaatctc tagtctaaac gaactagttt caattttcac agaaacctgc       600
     aactatgcac taaaaaaggc ctgccccaat agcaagccca aaagaaaaag aaaacctccc       660
     tggtggtcag cagaactgtc ccccctccga atagactgca gaaccctttt taacagggcc       720
     aaggcaggaa atgaggaggc cctgtggacc gcctacaaga gagcccttgc aaactacaaa       780
     aaaaccatca ggaaagcaaa gcgatcctcg tggcattcct tctgctcaga aattgaaaat       840
     acaactgaag cagccagact tagaaaaatm ctatccaaat cggccacaac cctaggctac       900
     cttaaaagag cagatggctc ctggaccagc acgagtgagg aatctctgga gatacttcta       960
     gacactcact tcccaggaaa cagccaaaac gctctcaccc cccaacaaac aaacgccaca      1020
     ctggcaagta tcgaactgtg catagaccca aaggtcctcc attgggccat acacagcttt      1080
     aaaccataca aatctgcagg tacagacaaa atcatacccg cacaaatcca gcatgcggga      1140
     aatatagcca taaactggct tcttgacatt tttaaaaggt ccctacttct tggacaccta      1200
     ccacaatcgt ggctagagtc ccgtattgtc ttcatcccca aagctgggaa accatcacac      1260
     acgaccccca aggatttcag accaatcagt ctgtcatcct tcctactaaa gacccttgaa      1320
     agaatcatcg gcctgcatct gagatcaact ctcaacccta gtctcatcac agacacgcaa      1380
     cacgcctaca agaaagggaa atcgacagag acagcactac actctctcgt ctccaagata      1440
     gaaaaatcaa tgtcccaaaa ggaatatgca ctggtagctt tcctggacat tgaaggagct      1500
     tttaacaacg tcatcccaac ggcgattacc ggagccctga cagaccttgg ggtggaccgc      1560
     cacttggtgg gactcataaa ccaactgctc acctgcagga aggttatgtc ttcactaggc      1620
     gcgtcaaccc tcactaggca cgtcagcaga ggcactccgc aaggaggcgt cctctcccca      1680
     cttctatkga acatagcagt caactcgata ctacgcgaca tggaaggggg gggctgtggc      1740
     gaccccctgt tctaagaagc cttacccggg cgtcgcggat ctccgcccgg gtggaccctc      1800
     cttttctccg caactcgtgg gaatcacatg gagtcaacaa aaataaataa aaaggagtca      1860
     ggatctccca aaaaacctac ccaaacggca gtgacgactg agtctggccg tacaaacttc      1920
     aaggcagcga agttggcgag tgagcccacc tgcctggcca caccgcagga tcgggttcgg      1980
     gtgaaccccg cctcgaatct gaggcgactg agtgcaagcc gcccaaagcc gcgcgggact      2040
     ccaggcccta gccatgatgc ccccttcggg cagcgcaagc cgcaggcgcg ggcggctgag      2100
     gggatgaaga aggtggaatg ggctaaatcc gttttgccaa acttcggcaa ggaagccccc      2160
     aaaccaccca agcccacgcc gaccccgcgg ccgcaaggcg accgcatcca cctaggacgg      2220
     agcggtccca ggacgccccc tccgacctcg ctggcaaggc agacaamgcg gcagccaccg      2280
     tggagagtca gccatctccg ttccgagtgc tgtcatcgta catcgcctac gaaaggcaag      2340
     aaccgccgga tggastggtc aggagattgg tagaagacag cgaaaagcaa aacataggcc      2400
     tactaatagg ctgtgatgct aacgcccacc atacacaatg ggaaagtaca gacacaaacg      2460
     accgcggtga gtctcttttt aactttatct ttagttcaaa tctcttcata tgtaataaag      2520
     gtaatgaccc cacctttatc attaagaacc gaaaagaggt aatagaccta gctctcgtct      2580
     ctaaaccact attagagaca gtaactcact ggagggtgct agataagcac tctttctcgg      2640
     accacaggta catagaaacg acccttacaa ccaatccctc aaaaccagca gttttcacaa      2700
     acccaaggaa aagagactgg caaaaataca aaactatttt aagggaaaaa atcccaacgg      2760
     atccccctcc atacccccaa acaatctcaa agcgatcctc gtggcattcc ttctgctcag      2820
     aaattgaaaa tacaactaaa gcagccagac ttagaaaaat cctatccaaa tcggccacaa      2880
     ccctaggcta ccttaaaaga gcagatggct cctggaccag cacgagtgag gaatctctgg      2940
     agatacttct agacactcac ttcccaggaa acagccaaaa cgctctcacc ccccaacaaa      3000
     caaacgccac actggcaagt atcgaactgt gcatagaccc aaaggtcctc cattgggcca      3060
     tacacagctt taaaccatac aaatctgcag gtacagacaa atcatacccg cacaatccaa      3120
     catgcggaaa atagccataa actggcttct tgacattttt aaaggtccct acttcttgga      3180
     cacctaccgc aagggctaga gccccgcagg gaaaccatcc accaccaggc cagccccccc      3240
     ccactaaaga cccttgaaag aatcatcggc ctgcatctga gatcaactct caatccagtc      3300
     tcatcacaga cacgcaacac cggataatag cctatgcgga tgacgttgct atcatcttca      3360
     caggcaaata cccccaaacg ctatgcgatc tcatgagcga aaaactcagt gttttgtcca      3420
     gctggaccaa aaataacgga ttaggaatta acccctcaaa gaccgagctg gttctcttca      3480
     ctaggaagta taacatacca gacctagtcc cacccatcct caacaatcaa agactttcct      3540
     tcagtagcag cgcaaggtac ctgggcgtaa tacttgacag gaaactaaac tggaacttga      3600
     acctcacaga cagatacaaa aaagcttcaa tagcactctt cacgtgcaag aaagcaatag      3660
     ggctcaaatg gggcatgaca ccctatatag taaactggat atatacggcc atcgtcagac      3720
     caatactact gtacggggtc gtggtatggt ggccggctct gaaaaagaaa tccagcataa      3780
     aaatgctagc aaaaatgcaa agagctgcgg cactctgcat cagcagtgct ttacgcacca      3840
     ccccaaacga agccctaaat gccatactca acctcccaag cccagaacta gctggcatgg      3900
     aacaggccac agtagcggca atcaggctta gagataccaa acagtggaac ccacaagaag      3960
     cgggtcactc atgtatccta aaaaacattc aaatagtccc ctccaggaca gactactgca      4020
     ctccwacgga gtacatacaa acacctttca acacaatcat cccagagagg gacgattgga      4080
     actcacgaac acctggcccc cagaatgcta tatgcttcta tacggacggg tcaaaactac      4140
     agaacagagt aggaggagga gtttactccg aacagctagg cctacgcacc tcgttcagac      4200
     tccccgatca ttgcagcgtc ttccaggctg aagtggcagc aataagggag gccctaaaac      4260
     acttaaaatc actaaaaccg gaaagctcac atgtaaacat tttcagtgac agccaagcag      4320
     ctatcaaatc gattggctca atctcaagtc actcgaaaac agtatcgaat tgccgatcat      4380
     ctttacacga gatgacacaa cccggacaca gggacataga aggcaactgc atcgcagatg      4440
     aactagctcg agaaggcact accgcgccac tcatacaaga gatggagggc atgagtatgc      4500
     ctttagccac ttgtaagcta ctacttaggg aaaacctaaa ccgtaacaaa cagacaatat      4560
     gggaaaacac cacacactgt cgcctaacac gccaaatatg gccaaaaata agctcaaaga      4620
     gaacgtcaaa acttttaaga ttgaccagag caaacctcag cactgcwatg agagtcatca      4680
     cagggcattg gttgataggc acccatgcca gaagactaaa tgccccgtat aatgatttct      4740
     gccgtagctg tagggacgaa gaaatggaag aaacagtaga gcatctacta tgccactgtc      4800
     cagcactgca agcgaaaaga cttgctcaat taggaagcag attcctgata gacacgtccg      4860
     acctgtccga caccgatcca catcggatac aaaaattcac cagcgcctct ggctggggaa      4920
     actgctaact tcacacgaac ctctgcgggc aaaaggggaa aacatacacg gtatcacaac      4980
     ggacctctaa tggtctaagt gcgtcggata accgacggcc ggtaaaacct aacctaacct      5040
     aa                                                                     5042
//
ID   LOA-1_FoCa  repbase;    DNA;    INV; 5395 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5395
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2718-2718 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..1492
FT                 /product="LOA-1_FoCa_1p"
FT                 /note="DUF4780."
FT                 /translation="MGGSACSQESIGLWGRESGSERELSPHEMCGESPHLR
FT                 PPPFCNPYIYINYIILIIWTAISPNFVGLWLFYIILLTSLSRKSAGEEEME
FT                 EEILKPEGEEGDLLLPSEVEESLLSDEAHLPSADAVSGGQGEAMEMGGDGD
FT                 GPLPPPQIATSANNRTVRRRARRRRAKELRAGGVPSAPKSNDDVTATATTT
FT                 TNITAPTTTTTTATSAAATGSRVFPSTPTTRRGGDRVKRVNLHEIDPTLKK
FT                 DAGSSSSTTTNNKRGRETPTSNNPREKKRPSTYREVVIEGSEVVITYKDDP
FT                 HRPLSKKDQEAIQVGLRSAIDAAAATTLLKFGGLVIRGGGMVLTCRDPTTK
FT                 LWAEAEVDKLEGGKFATSDPKPPEAEAKVSFWVREATPPLAKVLFPTISRL
FT                 NQGMDTTTWRMTHSIRSGQGFVCFCRIPKSGVAALKPPAEFNYYFDELVFR
FT                 VTETPPQN"
FT   CDS           1521..5288
FT                 /product="LOA-1_FoCa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTNTNITNITPSHSSTSLRTGLSSFNMTTKSVNLVQI
FT                 NLQHSKKGTTSLCRTLAELQTYICLIQEPYWYKGKIRGLGGCGNLHYFCRD
FT                 AHSSRSCIITSRDIKVWPLLDLCCRDVTAIRTQWGGIGEVVISSVYMDRNY
FT                 ACPPEEMRQLVSYCETNGLPLVIGSDTNAHHTMWGSTNINSRGAQLLDYIA
FT                 QVDLHPINRGHRATFVVSNKKEVLDVTFVSSHLLDRIKAWWVDDNESCSDH
FT                 RYIRTSLSLGPPDPIIYRDRKRTRWDLYKSVLKGLTELDPARACPMSSTEE
FT                 IEASASRVSNFIHKSYDVACPEKVLKSRRKRVPWWSRELTSLRKEARRLYR
FT                 VARFGGEEAWAEYKAARNYYSYEMRRRKTASWRRFCESVEEAPVAARLSRI
FT                 LRNDGTIKLGSLDKGDGVYTRTLSETYELLLDQSFPRDPQRVPWEPDHSKV
FT                 DDESINLMITSSKISNIINSFGPLKAAGKDGIFPALLQHGLAELIPYLVPL
FT                 MRGCLTFGYTPLKWRESRVVFLPKPGKESYERASAWRPICLTSFLLKTLEK
FT                 LVDGWVRTPDLVDRLQRHSQYAYMKGVSTEAALHQIVSLVEGALDSGEYCI
FT                 AVMLDVKGAFNEVRSDTIIRSLRRFGVNEVCVRYIEHMLRTRTTWVTDSTY
FT                 EIGRVVERGCPQGGVLSPLLWDLVVSEILEKLHHRFPQLYSQGFADDLTTV
FT                 GRGIDLGTVGSHVQRAVNLVSDWCKEVSLSVNDKLALVLFTKKYKFIAPVI
FT                 KLDGIPIPYQKQVRYLGVLLDHKLNWGPLCRARALKGMRALAQCRRAIGKT
FT                 WGLSPKITNWIYKSIIRPAMEYGSLLWAPATKVKSHMAQLQRVQRCAMLGT
FT                 TGVMSSTPTAALECLLGLVPVDIRVQQVALRTYHRLAHHGQWKKWAGGDRT
FT                 RALKHNKFVEIMASGIDEFQMPCEKLVNPPAERNFETSICSVKDWEDGSVP
FT                 MNASDVNCFTDGSRMGECSGAAYYFTYNNLAQEAVRCSIPLGWAPTVFQAE
FT                 IMGIIRASETLTDNTHNYSTVDFFIDSQGAIKALTSPWPVSSLTAEAIEML
FT                 NHIGETKKVTLHWIPSHHGFEGNEVADLLAKEGTLTGYLGPQPSIPLSRST
FT                 VISSIVNWARLQHTKSWESSKGCLTSKAFLSAPSSGLSSKLLTLNRKNLRS
FT                 VTQTLTGHCTLNGHLRTMGLVDEAMCLCGRGPETVFHFLGSCDKYCALRSE
FT                 LFGRHELPPEQIVTMSLPDLIQFIIRSGRFVGQVRSVNRESHDLAQ"
XX
SQ   Sequence 5395 BP; 1417 A; 1281 C; 1397 G; 1299 T; 1 other;
     caggatacac cgcgaagctc aaaggagcag catctggaaa ttctgcccag tttttttgtt        60
     attttacaaa aaataattca ccaattttgg acaccatgtc gaggtgagtg aagtgtgcta       120
     cacccaccct gacatgggag gaagtgcctg ctcccaggaa agtattgggt tgtgggggag       180
     ggagagtggg agcgagagag aactttctcc acacgaaatg tgtggagaaa gtcctcacct       240
     ccgacctcct cccttttgca acccatatat ttatattaat tatataattt taattatatg       300
     gacagccata agcccaaatt ttgtgggctt atggctgttc tacattattt tactcacctc       360
     tctctccagg aaatcagcag gagaggagga gatggaggag gagatcctca aacctgaggg       420
     cgaagaggga gacttacttc tcccctccga ggttgaggag tcactcctct cwgatgaggc       480
     gcatctcccc tctgcggatg cagtgagtgg aggccagggg gaggcgatgg agatgggggg       540
     cgatggagat ggaccattgc caccacccca aatcgccacc agtgccaaca accgtacggt       600
     gaggaggagg gcgaggaggc ggcgcgcgaa ggagctgcgg gctgggggtg tgccttctgc       660
     ccccaaatcc aacgatgacg tcactgccac cgccacaacc accaccaaca tcacggctcc       720
     aaccactact acaacaactg ccaccagcgc cgctgcgact ggaagcaggg ttttcccctc       780
     taccccaacc actcggaggg ggggggacag agtgaagagg gtcaatcttc acgaaattga       840
     ccccacactc aaaaaagacg ctgggtcttc ttcctccact accaccaaca acaagagagg       900
     cagggagacc ccaacctcca acaatccgag ggagaagaag aggccctcta cctaccggga       960
     ggtcgtgatt gagggtagtg aagtggtcat cacttataaa gatgaccctc accgccctct      1020
     ttctaaaaaa gaccaagagg ccatccaggt aggacttcgc tctgccatcg atgcggcagc      1080
     agcgacaacc ctgctcaagt ttggtggact tgtgatccgg ggtgggggca tggttctcac      1140
     atgccgtgac cccaccacca aactttgggc tgaagcggag gtggacaagc ttgaaggggg      1200
     gaaattcgcc accagtgacc ccaaaccacc ggaagcggaa gcaaaagtga gtttttgggt      1260
     cagggaggcg acaccacctt tggccaaggt actcttcccc accatctctc gactcaacca      1320
     gggcatggac acgaccacat ggaggatgac ccattctata aggtcaggtc aaggttttgt      1380
     ctgtttttgt cgtattccta aatctggcgt ggcggcctta aaaccgcccg ccgaatttaa      1440
     ttattatttt gatgagttgg tgtttcgggt aactgaaaca ccccctcaaa attaacttcg      1500
     cgtcataacc ctcactcaca atgactaaca ctaacatcac taatattaca ccatcacact      1560
     catctacatc tcttcgaacc gggttgtcat cttttaatat gacaaccaaa agtgtgaact      1620
     tggtgcaaat taacttgcaa cactcaaaaa agggtacgac ttctctatgt cgtaccctag      1680
     cagagttgca gacatacata tgcctaatac aagaaccgta ctggtataaa ggcaaaatac      1740
     gaggtctggg gggttgtggc aacctacatt atttttgtcg ggatgcccac tccagcagat      1800
     catgtattat tacaagtagg gacatcaaag tgtggccctt gcttgactta tgctgtagag      1860
     atgtcacagc catccgtacc cagtgggggg gtattggaga ggtagtgata tcctcagtat      1920
     acatggatag aaactatgca tgccccccag aggagatgcg tcagttggtc tcatactgtg      1980
     agaccaacgg tctacctctg gtgataggga gtgataccaa cgcacaccac accatgtggg      2040
     gtagcaccaa tatcaacagc agaggtgcac aactattgga ttacattgca caggtggatc      2100
     tgcaccccat taatagggga cacagagcca cctttgttgt atcgaataag aaagaagtgt      2160
     tagatgttac atttgtatcc tcccatttgc tggaccggat aaaggcctgg tgggtcgacg      2220
     acaacgaaag ttgctctgac cacaggtata ttcggaccag cctaagcctt ggtccacctg      2280
     accctatcat ctatagggac aggaagagaa caaggtggga cctatacaaa tcagtattaa      2340
     aaggactaac ggaacttgac cctgctaggg cgtgcccaat gtcatctacg gaggagattg      2400
     aggcgagcgc tagtagggtc agtaacttta tccataaatc atacgatgtg gcctgccctg      2460
     aaaaagtact caaatccagg aggaagaggg taccttggtg gagccgtgag ctgacttctc      2520
     ttcggaagga ggctcgcagg ctttatcggg ttgcccgctt cggaggagag gaggcatggg      2580
     cggaatacaa agctgctcgt aactactact cctacgaaat gaggaggagg aaaactgcct      2640
     cgtggagaag gttttgtgag agtgtcgagg aggcacctgt tgctgcccga ctctcgcgca      2700
     tccttcgcaa cgatggcaca atcaaactgg gatcactgga caagggtgat ggtgtttaca      2760
     ccaggaccct ttctgagacc tatgaattat tattggacca gtcgttcccg agggaccctc      2820
     aacgggttcc atgggaacct gatcatagta aagtagatga tgaatctata aatctgatga      2880
     ttacatcttc aaaaatcagt aacataatta actcgtttgg cccactaaaa gcggctggaa      2940
     aggatggtat ctttccagcc cttttacagc atgggttagc cgagttaatt ccgtatttgg      3000
     ttcctctcat gagggggtgc ctgacctttg gctatacacc tctgaagtgg agagagtcca      3060
     gagtggtatt cttaccaaag ccaggaaagg agagttacga acgggcgtcc gcttggaggc      3120
     ccatctgctt aacatccttc ctgctcaaaa cacttgagaa actggtagat ggctgggtcc      3180
     gcacgcctga tcttgttgat aggctgcaga gacacagtca gtatgcctat atgaagggcg      3240
     tttccacgga ggctgccctt catcagatcg ttagccttgt tgagggggcc cttgactctg      3300
     gcgagtactg tattgcagtg atgttggatg ttaagggcgc ttttaatgag gttagatctg      3360
     ataccattat ccgtagcctt aggaggtttg gcgtcaacga agtatgtgtt cgatatattg      3420
     agcacatgct tcggacacga accacttggg taactgattc tacttacgag attgggaggg      3480
     tggtggagag agggtgccct caagggggtg tcctctcacc gcttctctgg gatctggtcg      3540
     taagtgaaat tctggaaaaa ctgcatcatc ggttccctca actgtactca cagggctttg      3600
     ccgacgatct cacaacagtg ggacggggca ttgacctcgg tacagtgggg agtcatgtgc      3660
     agagagcagt aaatcttgtt agtgattggt gcaaagaggt gagcttgtca gtcaatgata      3720
     agcttgccct ggtactattc actaagaaat acaaattcat tgctcctgtg atcaagttgg      3780
     atggtattcc catcccttat caaaaacagg taagatatct tggggtctta ttggatcaca      3840
     agttgaactg gggcccactg tgcagggcta gggcactaaa aggtatgcgt gccctggccc      3900
     agtgcaggag ggccattggt aaaacttggg gtctttcccc caaaattaca aattggatct      3960
     acaaatccat aattcgcccg gccatggaat atgggtcact cttgtgggct ccggccacaa      4020
     aggtgaagtc ccacatggcc cagttgcaaa gagtacagag gtgtgccatg cttggtacaa      4080
     ccggtgtaat gtctagcact cctactgcag ccctggagtg tctactggga cttgtcccag      4140
     tggacatccg ggttcagcaa gttgcactac gaacgtacca tcgcctcgct caccacggcc      4200
     aatggaaaaa atgggccggg ggtgatcgta cgagggcgtt aaagcataac aagtttgtcg      4260
     aaatcatggc gtctggtatt gatgaattcc agatgccgtg tgagaaactt gttaatccgc      4320
     cagcagagag gaacttcgaa acctctatct gttcggtgaa agattgggag gatggtagcg      4380
     tgcccatgaa tgcctccgac gtgaactgtt ttactgacgg ttcacggatg ggtgagtgtt      4440
     cgggtgcggc ttactacttc acatacaaca atcttgccca ggaagctgtg aggtgctcaa      4500
     ttcctctggg atgggcaccc acagttttcc aagcagaaat tatgggtatt atcagggctt      4560
     ctgaaacgtt gaccgacaat actcataact atagcaccgt tgacttcttc attgacagtc      4620
     agggtgccat caaagcgctc actagcccat ggccagtttc atcactgact gctgaggcta      4680
     ttgagatgct taatcatatt ggggagacta agaaggtaac acttcattgg atcccttctc      4740
     accatggatt tgaaggaaat gaagtggctg acctgttggc caaggaaggt actcttactg      4800
     ggtaccttgg cccgcagccc tctattcctc tatccagaag cactgtaatc tccagcattg      4860
     taaactgggc aagattgcag cataccaaat cttgggaaag cagcaagggt tgtttaactt      4920
     ctaaagcttt tctctctgcc ccttcatcgg ggcttagcag taagctttta accctaaatc      4980
     ggaagaatct ccgatcagta acacaaacct taaccgggca ctgtacttta aacgggcacc      5040
     tcagaacaat gggattagtt gatgaggcca tgtgcctatg tggccgtggc cctgagactg      5100
     tatttcattt tcttgggtcc tgcgacaagt actgtgccct aaggtcagaa ctctttggga      5160
     ggcatgagtt gccaccagag caaatagtga ctatgtctct gcccgatcta attcaattca      5220
     taatcagatc agggcggttt gtaggtcaag ttagatctgt aaatcgtgag agtcatgact      5280
     tagcacagta aagcggtgta tacggggaga ctgcaataag cctttagtgc ttgcgcagct      5340
     gacggtcctg tccaacaatg gcaggatcgt caccccacca atacatacat acata           5395
//
ID   Loa-1_LHu   repbase;    DNA;    INV; 4825 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4825
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 479-479 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           62..706
FT                 /product="Loa-1_LHu_1p"
FT                 /translation="MAACHWGSSVANDASGVSPGSPEAPCSSLATRGTTMD
FT                 SNLKLNVENEVGSRKGSRDGSPREGARTVTDGTLKGSGSEAGPAARQEVSP
FT                 PARKNRCGAERRRAKRMRAAALEGARSLPVASPCTPVEVVKRHADGKRRKG
FT                 SKDTPPSGDRPLKKQRTRDGQHAYSDAADPLARVIVAEGYPETGITAEQLT
FT                 PSRDAVLEKIDGSRRVRCPDSTALL"
FT   CDS           1561..4620
FT                 /product="Loa-1_LHu_2p"
FT                 /translation="MGCDANAHHTVWGSSDTNERGRKVLEFLASTDLEILN
FT                 TGDEPTFCTIARREVLDITVCSRQLIQEVVEWRVSTEPSLSDHRQIXFRIA
FT                 KARGKEVKFRNPRKTKWDSYREDLANSLKGFPKRHGTEDELETCVDYLQRS
FT                 LVNCYESNCPERAVTNSRGTSWWTPGLQGLRVAARRAWNRARNTGRQSDWE
FT                 LSRRAQKEYRDSVVRAKLESWRKFCEEVEGMPETARICRILARNPDATLEA
FT                 IALPDGTVVTGERCLEHLLEVSFPGFHREQGELFAYKEPGSLRRARQADWR
FT                 MAAKIVMPEKVKWAINTFKPYKSAGPDGVFPALLQEGLEQIVGPLTRTLRA
FT                 CIAMGYTPSAWKLARVVFIPKAGRTSYTKAKDFRPISLTSFLLKTLEKLVD
FT                 AYLRETTLWSHPLHKNQHAYRSGYSTETALHQTVAFIEEQLERKGYAVGAF
FT                 LDIEGAFNNTPHEVVCEEAARRGVPMKLVEWIRGMLGRRVMTSLGTAKVCG
FT                 WVGRGCPQGGVLSPLLWCLVADGLLKALDDRGFTAQGYADDVAILVRGPFL
FT                 ETLLELMQGALEVVEEWCQRTGLAVNPLKTGLTVFTRKYKVGTIVGPTLGG
FT                 VRLVPTESVKYLGVILDRKLLWEEHLRNRCKSLCQYFWTCRRTFGQTWGLK
FT                 PSMIHWIYTAILRPRLTYAAVVWWTRVQKKTAKVALEHVRALILRGALGAM
FT                 VTTPVAAMGVMFGIEPFHQVVVAAAAVAAYRLRCELKWKKGARHTRLPEDV
FT                 LLDPIFEMRQDRIPIIRASDRRFKVHIPRPEEWEKEGGNLGARVRGGDVWY
FT                 TDGSKTDTGSGAGFFGSREGWKESISLDSYATVFQAEIVAILSCAQTVRSR
FT                 VEAGEHIRICTDSQAAIKALGAPTITSRLVRECRGVLNELAREREVTVTWV
FT                 PGHSGIQGNECADQLAKAGSEITMVGPGPALGIPFCLGRGRIKEWLRREHL
FT                 RHWRVESESKCRQARALMGDTPNRELAWSIRALSRRDARTAVHILTGHGTL
FT                 SYXMYSATVLHMQG"
XX
SQ   Sequence 4825 BP; 1150 A; 1121 C; 1612 G; 940 T; 2 other;
     gggtaaggga agaccgttgc cgcggaccag ctccccaagc caagtgtaag ccatcgtggc        60
     gatggctgca tgtcactggg ggagcagtgt cgcgaacgat gcctctgggg tttcgcccgg       120
     ttccccagag gcaccgtgta gttccctagc tactcgtggg accactatgg attcgaattt       180
     aaaattaaac gtagagaacg aagtgggaag tcggaagggc tcgcgtgacg ggtctccgag       240
     ggaaggagct aggacggtga cggacgggac ccttaagggc tccggaagtg aggccggccc       300
     ggctgcgcgg caggaggttt cacctccagc gaggaagaat cggtgcgggg ccgaaagaag       360
     gagggcgaag cggatgagag cagcggctct ggaaggggct cgctctcttc ccgtggcttc       420
     cccctgtacg ccggtggaag tggtgaagag gcacgccgac ggtaaacgtc ggaagggttc       480
     caaggatacc cctccatcgg gcgaccgtcc gctgaaaaag caaaggactc gcgacgggca       540
     acatgcttac tcggacgctg ctgaccctct ggcgagggtg attgtggcgg agggctaccc       600
     cgagacaggg atcactgctg agcagttgac tccgtcgagg gatgcggtct tggagaagat       660
     cgacggatcc aggagggtcc ggtgcccaga ttccacggca cttctctaag gagtggtgcg       720
     gcggtggtaa gatgcgcgga tggggcgtcg ctggattggc tcgtggggcg gatcggcggc       780
     atcactccgt gggagggcgc caggctcaag gtgatgggct tggacgcgct tcaaaagcag       840
     cacagggcgg tggtttgggt cccgggactt cccgggcgcg gccacggtcc tgaagcggct       900
     ggagaagcag aacccgggtc tcgtcaccgg gagctggaaa gtgttcgcgg agggggtagg       960
     ggccaccagg gagggtggga acctggtcct cggtgtcccg gagtccagtg tcctcaaatt      1020
     gaagacactg gacttcagac cattctttgg gctcgacagg gttgtctttc gggtaagtgg      1080
     agcccagggg ggggtaaagg gggataagga ggacccccct aaaacggtct cgcagccaaa      1140
     tggcgggatc gagagggata gccttcaccc aggttaatct gcatcacagc aaaggggcct      1200
     cggctgtttt ggccaggcaa caagctggga gacaaacatg catatcactg atgcaagaac      1260
     cctgggtaat ccgaggttgc atcaggggtt tggcggcctg cggtaggctc tttagggctc      1320
     catcagtgga ccggcccagg gcctgcgtgg ccgtcaaggg catggaagcc cagctgatac      1380
     ctcacctgtg ttccagggac gttgcggctg tagaagtgaa tttcactgat gactccggtg      1440
     acaggaagaa aatggttatt tgctcggcct acttctctca tgacgagggg gaggcggtgc      1500
     cgcctgtacc ggtgataaaa ctggcagaat actgccagga gaaacggctt ccccttgatc      1560
     atgggatgtg acgctaacgc gcatcacacc gtgtggggaa gctcggacac caacgaaaga      1620
     gggaggaaag tgttggagtt tctagcatct acggatctgg agatcctcaa cacaggagac      1680
     gagcccacct tctgcactat agcgagaaga gaagtgctcg acatcactgt ctgttccagg      1740
     cagttgatac aggaggtagt ggagtggagg gtctcgacgg agccctcgct ctctgaccat      1800
     aggcagatcn ccttcaggat agctaaggct agggggaagg aggtcaaatt caggaacccg      1860
     aggaaaacca agtgggactc ctatagggaa gacctggcca acagtctcaa aggcttccct      1920
     aagaggcacg ggacagagga cgaactggag acctgtgtgg actacttgca gaggtctctg      1980
     gtaaactgct acgaaagtaa ctgccccgaa agggcggtta caaatagtag aggaacttcc      2040
     tggtggaccc ctggactgca gggtctcaga gtggcggctc gtagggcctg gaacagagct      2100
     aggaacacgg gccgccaatc cgactgggag ctctctagga gggcacagaa ggaatataga      2160
     gactctgtgg ttagggcgaa actggaaagc tggaggaagt tttgcgagga agtagaggga      2220
     atgcccgaaa cggcaagaat ctgcaggatc ctcgctagga acccggatgc gactctggaa      2280
     gccatcgcac tccctgatgg gacggtggtg actggagagc gatgtctgga gcatctactg      2340
     gaagtgagct ttccgggctt ccatagggag cagggagagc tatttgcata taaggagccg      2400
     ggctcactca gaagagcccg acaagcggac tggcgaatgg cggccaagat tgtcatgccc      2460
     gagaaggtca agtgggcaat taacaccttt aagccctaca agtcagcggg accggatggc      2520
     gtctttccgg ctcttctaca agagggactg gaacagatcg tgggcccact gacccgaacc      2580
     ttaagggctt gtatcgcgat gggctacaca cccagcgcat ggaaactggc cagggtagtt      2640
     ttcatcccga aggcgggaag aacgagctac accaaggcaa aggatttcag gccaattagc      2700
     ctaacatcgt ttctccttaa gacattggag aagctggtgg acgcgtatct gagggagaca      2760
     actctgtgga gtcaccctct ccacaaaaat cagcacgcgt atcgttcggg ctattccacc      2820
     gagactgctc tacatcagac ggtagcgttt attgaggagc agctggaaag gaagggctac      2880
     gcagtgggtg ctttcttgga catagagggc gcctttaaca acacaccgca cgaggtagtg      2940
     tgtgaggaag ccgccagaag gggtgtcccg atgaagctcg tcgagtggat ccggggcatg      3000
     ctagggaggc gtgtgatgac ttcgctggga actgcgaaag tctgtgggtg ggtgggaaga      3060
     ggctgcccgc agggcggagt actttcccca cttttatggt gcctggtagc agacggttta      3120
     ttaaaggcac tggacgatag aggcttcact gcacaaggct acgcggacga cgtggcaata      3180
     cttgtgcgag gcccttttct agagacgctt ctagagctca tgcagggggc actggaagtt      3240
     gtagaagagt ggtgtcagag gacgggttta gcggtgaatc cactgaaaac cggtcttact      3300
     gtcttcactc gcaaatacaa ggtgggcacc attgtgggac ccactcttgg aggagtaagg      3360
     ttagttccga ccgaatcggt gaaatatttg ggagttatcc tggataggaa actgctttgg      3420
     gaggagcacc ttcgtaaccg gtgcaaaagc ttgtgccagt atttttggac gtgtagaagg      3480
     acctttggcc agacttgggg cttgaaaccg agtatgatac actggatcta cacagccata      3540
     cttcgcccca gactcacata cgcagccgta gtatggtgga ctagggtgca aaagaaaaca      3600
     gccaaagttg cgctggagca tgtcagggct ctgattttga gaggggccct gggtgctatg      3660
     gttacgacac cagtggcggc gatgggcgta atgttcggca tcgaaccgtt tcatcaggtg      3720
     gtggtggctg ctgcagcagt ggcggcatac cgtctgagat gcgaactaaa atggaagaag      3780
     ggagcccggc atacgaggct gccggaagac gttctgctgg atccgatatt cgagatgcga      3840
     caggacagaa tacctattat tcgggcttct gataggcgct tcaaagtgca tataccgagg      3900
     ccggaggagt gggaaaagga aggtggaaac ttaggggctc gagtgcgtgg aggagatgtc      3960
     tggtatacgg acggctccaa gacggacacg ggctccgggg ccggcttctt tggcagtcga      4020
     gagggatgga aggagagcat ttctctcgac agttatgcca cggtattcca agcggagatt      4080
     gtggctatcc taagctgtgc tcagaccgta cggagtaggg tagaagcggg agagcacatc      4140
     agaatttgta cggacagcca ggcagccatc aaggcgctgg gggctccgac aataacgtcg      4200
     cggttggttc gggagtgcag aggcgttctg aacgaactgg cgagagagag agaagtcacc      4260
     gttacctggg tgccgggtca ctcgggcatc cagggtaatg aatgtgcgga ccagctggca      4320
     aaagcgggtt cagagataac gatggtagga ccggggccgg ctctgggaat ccccttttgt      4380
     ctaggaaggg ggaggatcaa agaatggctc cgcagagaac atctaagaca ctggagagtg      4440
     gaatctgagt ccaaatgcag acaggctaga gctctgatgg gagatactcc taatagggaa      4500
     ctggcttgga gcataagggc tctgagtagg agagatgcca ggacagcggt acacatactg      4560
     acgggtcatg gcaccttaag ctaccncatg tactcagcga ctgtcctgca catgcagggt      4620
     tgagacacag gatgctgggc tcagcactac ttgggcccga gcagatcagg gagctgccgg      4680
     tgagggatct gattctcttt tggagaaaaa caggtctctc atgagtaagt ttatgagggg      4740
     aggcacaatg gacaatgtct gggtgccgcg ggcggcgctt cgaaagagga acgccccccc      4800
     gttacgatat tattatttat tatta                                            4825
//
ID   Loa-1_LMi   repbase;    DNA;    INV; 5040 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5040
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3160-3160 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..1016
FT                 /product="Loa-1_LMi_1p"
FT                 /translation="MNTEKESILKESEGQSETSDTQTSGSGPMECTPTSES
FT                 GSRPEQEVGTVTEKLDQIRIKALSGAQRRKLLKEQKQKEGKEWLPKHKWRE
FT                 SKGLEPKTPKKKLPQVEGDTQTPSTSKTGGKRVREESKTPSSLDKRDPKRL
FT                 RQEIGKQTYSTAVSVFRMAVVQEGYPLVSITSQQEELVQMALFEEIGGDAG
FT                 PGPKFRRVYLDRGALIFVCKGEHQQMA"
FT   CDS           1524..4934
FT                 /product="Loa-1_LMi_2p"
FT                 /translation="KWNTFHTNDGFLFQGPVTSGCSNVRKVTREIVLASAY
FT                 LPYEDSSPPSLEVRRLTEACHRQGDELLVGCDANAHNLSWGSKDTNSRGEH
FT                 LLEFLLSNNLEILNRGDEPTFRNSRREEVIDITFGSMMMGSYVKQWHVVLE
FT                 PSSSDHMYIKFKVEMGTRQTMAYRNPRKTDWETYRRDLDFSLSEIKTSIRN
FT                 PAEFEEVAEAVTSAIVTSYQDNCSITKKCTNRSVPWWNNNLEMQRKQVRRL
FT                 FNLARRKGQWAKYREALVNYNLAIRRAKEASWKVFCEEVEGTAAQARLHKI
FT                 LTRVPTNPGGTLRKEDGEYTKTAHETLELLLKTHFPQYTLGDNSDQNAIPE
FT                 RQRFSQRGLGFGQGVCRFSKVRWAVGTFQPFKSPGPDGIFPALLQQVGENL
FT                 IRFLCRLFRVSLAAGIIPNAWRAVKVVFIPKPGRIDHTKAKDMRPISLSSF
FT                 ILKTLEKLVNVHVGERRLSRAPLHSNQHAYQPGKSCETALHQLVGKVEKAL
FT                 HFQEIALCIFLDIEGAFSNTTFDSMVRAAEVHDLGTTICRWTRAMLSGRKV
FT                 EATMMNEKMVINTTRGCPQGGVLSPLLWNLVVNDLIGELNSRQYFCQGYAD
FT                 DLVIVILGKFADTVKNMAQGALDIVQDWCRKQDLGVSPKKTVVVPFTKKHI
FT                 QHSSWNLKLFNEALPVKGTVKYLGVTLDEKLTWTPHIRNICSKAKGTLVST
FT                 RRACGKNWGLSPKGMHWIYTTVIRPRITYGAVVWWKKVEQQVAAKELGKVQ
FT                 RLACLAITGGISSTPTAGMETMLDMPPLHLWVKMEAAAGAYRLKTGKNWNS
FT                 LGYPESHTKIVSEVNIGKVGEMPADYIITPYCFNKPFNITIGSREQWEKIV
FT                 RHRTGDIVWFTDGSKSDQGVGAGVYGVQPRLEGVISLGKLASVFQAEITAI
FT                 RACVEENLRRCYKDRSIYIYSDSQAALRSLAAPATRSKIVAECHRVLVELG
FT                 ESNRVNLLWVPGHSGISGNEHADRLARMGAETPFIGPEPVLTITKAMIKLE
FT                 LRNWLRRQHVEYWTKVHQQKHGKVMMPKPCFKRSSAILGLNRREIRLMVGL
FT                 LTGHGNFKKHLHTMGITEEDPKCRICDDGDETASHLIFECIALESKRHRTF
FT                 GTTRPEEIVSNKELVKGLLALFKGIGWLY"
XX
SQ   Sequence 5040 BP; 1488 A; 1069 C; 1389 G; 1093 T; 1 other;
     cctctccggg ggacaccacc ttgacgaagc actgtccgtg cgggtggaga ggcttgcgca        60
     tccgtgtgaa gctgagggct ataccgaagg tagagaacct actgccggaa aggcctcagc       120
     tgatggatca gactaagcgt gtcccacaac gtcccgtctt ccttatcctc tcccagtcct       180
     ttcccaattc ctttcccaac ccaaggtgtg atgcgatccg tgccgagggg tgcgtggcac       240
     atgggtggat gtgtctcgaa cggagcctca gggataccgg gcgacctccc tgagtaagta       300
     gccttgcacc gcgcggggtt atcgtggtgt ggaccatata aatccccaaa tctcgtggga       360
     ctaagatgaa cacagagaaa gaaagtattt taaaagaatc tgaggggcaa tctgagacct       420
     cagatactca gacatcggga tcaggaccga tggagtgcac tcctacttct gaatcagggt       480
     ctagacctga gcaagaagtg ggaactgtaa cagagaagtt ggaccagatt aggattaagg       540
     ccttgtctgg ggctcagagg aggaaacttc tcaaggaaca gaagcaaaag gaaggaaaag       600
     aatggcttcc taagcataag tggagggaat caaaagggct tgagcccaag acccccaaaa       660
     agaaactgcc tcaggtcgaa ggggatacac agaccccctc gacgtcaaag acaggtggca       720
     agagggttag ggaggaatct aagactccct cctctctgga caagcgtgat cctaaaaggc       780
     tgaggcagga aatagggaaa cagacctata gtactgcagt ctcggtcttt agaatggcgg       840
     ttgtccaaga aggataccca ctggtgagca tcacctcgca gcaggaggag ctcgtgcaga       900
     tggccctctt tgaagagatt gggggggacg ctggtccagg acccaaattc aggagggtct       960
     atctagatcg cggtgccctc atttttgtct gcaaggggga gcatcagcag atggcttaag      1020
     gacaaggtgc ccatgatatc cccgtgggag gatgcaaagc tgctggtcaa gacagcaccg      1080
     aaggtatcgg gcttaaggat gtccctccaa agactgttcg agaaaatagg gtcagaaccc      1140
     aaaagtctcg acagaggatt ggagggtaat taaccaaaag tcgttccgag gacgaaccct      1200
     ggtggggagg tcgagaagtc cctgaaggca tgcgagagaa ggctgaatgt ttttagggtt      1260
     ctcgcaggtc gccgtcaggg taatcaaaga ccttaaaggc aataatggca gcaagatggg      1320
     gactggaagt gctgcagata aacctgcagc acagtaaagg gccactgctg ccctgagcgt      1380
     cgcctgggga gacaggaggt ggacgtggcc ctgatacaag aaccctattt atacaaaggg      1440
     ggtgtatcgg gcctcggtgg tactggaggt aagctgattt atgctagaaa tctaaaaaac      1500
     tccagaacat gcatttatgt tagaaatgga atacctttca taccaatgat ggatttttgt      1560
     tccagggacc ggtgacctca ggatgcagca acgtgaggaa ggtcacgagg gaaattgttt      1620
     tggcctcagc ataccttcct tacgaagaca gctctcctcc ttctttggaa gtgaggagac      1680
     tgacggaagc ctgccatcgg caaggtgacg aactgttggt gggatgtgat gccaatgccc      1740
     acaatctatc gtggggcagc aaggacacca acagtagagg tgagcacctt cttgaatttc      1800
     tcctatctaa caacttggag atcctgaata ggggtgatga acctacattc aggaatagta      1860
     gaagggaaga agtaattgac ataacttttg gttccatgat gatgggaagt tacgtcaaac      1920
     agtggcatgt ggtcctggag ccatcctcat cagatcacat gtatattaaa ttcaaggttg      1980
     aaatgggaac cagacagacc atggcctata ggaatcccag gaaaacggac tgggagacat      2040
     ataggagaga ccttgacttc agcctatcgg aaattaaaac ttcgataagg aatccagcag      2100
     agtttgagga agtagcagag gccgtaacct ctgctatagt gacctcatac caggacaact      2160
     gctcaatcac caagaagtgc acaaatagga gtgtgccttg gtggaataat aacctggaaa      2220
     tgcaaaggaa acaggtacga agactgttta accttgcgag gcgcaaagga caatgggcaa      2280
     agtatcgtga ggcccttgtc aattacaacc ttgccatcag acgggcaaag gaggcatcct      2340
     ggaaggtatt ctgtgaggaa gtggagggca cggctgctca agcgagactt cataaaatcc      2400
     tcactagggt accaactaat ccaggaggaa cattgaggaa ggaggatggg gagtatacaa      2460
     agacagcaca tgaaacgctg gaactgctcc tcaagactca ctttcctcaa tatactctgg      2520
     gggataactc agaccagaat gcgattcctg agagacaacg gttctcgcaa agaggactgg      2580
     gatttggcca aggagtgtgt cgattcagta aggtccgatg ggcggtggga acatttcaac      2640
     cgttcaagtc acctggcccc gatggaatct ttccagctct cctgcaacaa gtgggagaaa      2700
     atcttattag attcctatgc aggttattca gggttagcct agcagcagga atcattccca      2760
     atgcctggag ggcagtgaag gttgtcttca ttccwaaacc agggagaatt gatcatacca      2820
     aggccaagga tatgagacca atcagcctgt cctccttcat tcttaagaca ttggaaaagc      2880
     tggttaatgt gcatgttgga gaaaggaggt taagtagggc tcctctacat tcaaaccaac      2940
     atgcatatca gccaggtaaa tcatgtgaga cagctctcca ccaactcgtt gggaaggtgg      3000
     agaaagcact acactttcag gaaatagccc tctgtatctt cctggacatc gagggggctt      3060
     ttagcaacac gaccttcgat tccatggtta gggcagcaga ggtgcatgac ctagggacca      3120
     ctatatgtag gtggactagg gccatgctca gtggaagaaa ggtagaggct accatgatga      3180
     atgaaaaaat ggtaatcaac accactaggg gttgcccgca aggaggagtt ctttcccctt      3240
     tattgtggaa tctagtggtg aatgatctca ttggagaatt aaactctagg cagtactttt      3300
     gccaaggata cgcagatgat cttgtcatag taatacttgg caaatttgct gacacagtca      3360
     agaatatggc acaaggtgcg ttggacattg tgcaagactg gtgcagaaaa caggatctgg      3420
     gggttagtcc taagaagact gttgttgtac cattcacaaa gaagcatatc caacattcaa      3480
     gttggaatct aaagcttttc aatgaagcgc tacctgtgaa ggggacagtg aaatatctag      3540
     gggttacctt agatgagaaa ctgacatgga cccctcacat taggaatatt tgctccaagg      3600
     caaaaggtac tctggtaagt accaggagag cttgtggcaa aaattggggc ctgagcccca      3660
     agggtatgca ctggatatac accacggtga ttagacccag gatcacctat ggggcggtcg      3720
     tgtggtggaa gaaggtagaa cagcaggttg ctgctaagga gcttggtaag gtgcagagat      3780
     tagcctgctt agccataaca ggcggaatta gcagcacacc aactgctggg atggaaacca      3840
     tgctggatat gcccccatta cacctttggg tcaagatgga ggcagcggct ggtgcataca      3900
     gactcaaaac tggcaaaaac tggaactctt tgggatatcc agaatcacac actaaaatag      3960
     tgagtgaggt aaatatagga aaggttgggg aaatgccagc cgactatatt ataaccccat      4020
     actgcttcaa caagcctttc aatataacaa ttggaagtag ggagcagtgg gagaaaatag      4080
     ttcgacaccg tacgggggat attgtctggt tcactgacgg gtcaaaatca gaccaaggcg      4140
     ttggggccgg ggtatacggg gtgcagccaa gactggaggg cgtcatctct ctagggaaac      4200
     tggcctcagt attccaggcc gaaatcactg ccatcagggc gtgtgtggag gagaatttgc      4260
     gtaggtgcta caaagatcgt agcatctata tctattcaga cagccaggca gccctgagat      4320
     cactggcagc tcctgcaaca aggtctaaaa ttgttgcaga atgtcacagg gttctggtgg      4380
     agctagggga aagcaataga gtaaacctat tgtgggtccc tggccactcg gggatcagtg      4440
     gcaacgaaca tgccgacaga ttagccagga tgggggcaga gactccattt attggaccgg      4500
     aacctgtcct gacaatcacc aaggcaatga tcaaattgga gctacgtaac tggctcagaa      4560
     gacagcacgt agaatattgg accaaagtcc atcaacaaaa acatggcaag gtaatgatgc      4620
     caaagccatg ttttaaaaga agctctgcaa tcctgggcct gaacaggaga gagattagac      4680
     tcatggttgg attgctgaca ggccatggga atttcaaaaa acacctacat acaatgggaa      4740
     taacagaaga ggaccctaaa tgtaggatct gtgatgacgg tgatgaaact gcatcacatc      4800
     taatcttcga atgcattgca ttggagagta aaaggcacag aacatttggg acaaccagac      4860
     ccgaagaaat tgtgtctaat aaagaactgg taaagggact ccttgcactg ttcaagggca      4920
     ttggttggct ttactagata tacagggagc gataccgcac aataaactta gtttcggtgc      4980
     gggcagtggc gggttggacc aagactgttt tggcttccct ggaaaaatca aatcaaatca      5040
//
ID   LOA-1_PPo   repbase;    DNA;    INV; 3242 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3242
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3120-3120 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3157
FT                 /product="LOA-1_PPo_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="DANAHHQLWGMDRNNERGKNLVDFLFATNLNILNTGN
FT                 EPTFVTRRCRTIIDLTLASHNISTHIKGWHVSKEASCSDHRWICFYLDIET
FT                 KTTITPKRNPRRTNKAIYTKALDAKLNNIQSTSAASGPKVDSIESQANGIL
FT                 ECIMTSYHEACPAKVHAPKPGAQPWWCRELDKKRRKVRKTLNRAMNTSKDT
FT                 DWDAYKEAKSDYKKCIRKRRKTEWQKFCSSIDKCDQANRVRKVLSSQQLDG
FT                 PQTLRNTDNTYTTTQEETLTALLNAHFPGCIISSTKECSDDITMPTPEDWA
FT                 IAESIITQPKLKWAINSFHPYKAAGPDGVFPALLQWGEPLLNRRLVELMKT
FT                 CLAYKYIPKTWREVKVIFIPKPGKGDYTDAKSFRPISLTSFILKTMERLIE
FT                 RHIREVALKRKPLHPLQHAYSTGKSTDSALHLVVTKIEEALVKKIICIGSF
FT                 IDIEGSFDKTSFNHIEKALLSHGVEPTICVWITQMLSKRAICITDSRIVRI
FT                 TRGCPQGGVLSPLLWNLVIDELLSILNKNNFYTVGYADDLAILIPTTTASI
FT                 ACNLTHTALRIVERWCKKVNLSVNPNKTQLVMFTNKRNLGEHNPPSLFGTK
FT                 LQFSAEVKYLGVILDNKLNWTKHLENKLNKANITFWQCKKMIGKRWVLTPK
FT                 TVLWLYTSVIRPVITYGAVVWWTKTKQSTACNKLQRCQRLACMAMTGSMRT
FT                 TPTAALEALLNLTPLHIHIQQVATTTALRLKTLKLWKHNRTPHTTILDTLE
FT                 ETTPVMDAVQDLIPKQYIFEKKYKIHLSEDNDTYRKNSHYLMIYTDGSKTD
FT                 LGTGSGVFSEDLNIKIHTSLGTQNSIFQAEXXXXXXXXXXXXXXXXXXXXX
FT                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT                 XXXXXXXXXXXXXXXXXXXXXTNSSYALHSELWDNTSDCRQTKDALPKIDR
FT                 RLSSRLLKLSKQQLRLIVAALTGHGLFNKHLFNIGVTDSPLCRACMEEEET
FT                 ASHVIQHCRAVTEYRVRYLGSPRSLPEITSNIKGLLGFFGELGWLE"
XX
SQ   Sequence 3242 BP; 1026 A; 757 C; 590 G; 593 T; 276 other;
     cgacgcaaat gctcaccatc aactttgggg catggatagg aacaacgaga gaggtaaaaa        60
     tttagttgat ttcctattcg ccacaaacct taacattcta aacacaggca acgaaccaac       120
     tttcgtaaca cgacggtgca ggaccataat tgatcttaca ctggcatcac acaacatctc       180
     gacacacata aaagggtggc acgtctcaaa agaggcatcc tgctctgacc acaggtggat       240
     ctgtttttat ctagacatcg agaccaaaac aacaataaca cctaagagaa atcccagacg       300
     cacaaataag gcgatctaca ccaaagctct agatgcgaaa ctcaacaaca ttcaatctac       360
     ttctgctgcc agcggaccaa aagtagactc tattgaatct caagcaaatg gtatcttgga       420
     atgtattatg acaagctatc atgaagcctg tcccgcgaaa gttcatgctc ccaaacccgg       480
     cgcacaaccg tggtggtgca gagagctgga caaaaaaagg aggaaggtga ggaagactct       540
     aaacagagcc atgaacacct ccaaagacac agactgggac gcttacaaag aagcgaaatc       600
     agactacaaa aaatgcatca gaaaacgccg caaaacagag tggcagaaat tctgtagcag       660
     cattgacaaa tgcgaccaag caaaccgtgt aagaaaggtc ctctctagcc aacaactaga       720
     tggaccacaa acactacgta acacggacaa tacatacacg acaacccaag aagaaacact       780
     aactgcccta ctaaatgcac atttcccagg ttgcataata agcagtacca aagagtgttc       840
     agatgatatc actatgccca cccccgaaga ctgggctata gctgaatcaa taatcacaca       900
     acccaagcta aagtgggcaa tcaatagctt tcacccctat aaagccgctg gaccagacgg       960
     cgtttttcca gcactactac aatggggaga acccctcttg aacagaaggc tagtggaact      1020
     gatgaaaacc tgcctggcgt ataaatacat acccaaaacc tggagagaag tcaaggtgat      1080
     cttcattcca aaaccaggca aaggtgacta taccgacgcc aaatctttca gacctataag      1140
     cctaacatcg ttcatcctca agacaatgga aagacttata gaaagacata taagagaagt      1200
     agcactaaaa cgcaaacctc tacatcctct acaacacgcc tatagtacag gcaaatcaac      1260
     agactcagcc ctccacttag tagtcactaa gatagaggaa gcgctagtca agaaaataat      1320
     ctgcatagga tccttcatag atattgaggg gtccttcgat aaaaccagct tcaatcatat      1380
     agagaaagcc ctactgagcc atggagttga acccacaatc tgcgtatgga tcactcaaat      1440
     gctcagcaaa agagctatct gcatcacgga ctcccgtata gtgaggatta cgagaggatg      1500
     cccacaaggc ggagtcctct ctcctttact gtggaacctg gtcatagatg aactcttaag      1560
     catcctaaac aagaacaact tctacacggt aggatacgcc gatgatctgg ctattctgat      1620
     accaaccaca actgcaagca tcgcctgcaa ccttacacac acagcactac gcattgtaga      1680
     acgctggtgt aaaaaagtca atctatcagt taatccaaac aaaacacaac tagtcatgtt      1740
     cacgaacaaa agaaatcttg gtgaacacaa tccgccttcg ctgttcggca ccaaactcca      1800
     attttcagca gaggttaagt accttggtgt aattcttgat aacaaactga actggaccaa      1860
     acacctagaa aacaaactaa ataaagccaa cattaccttc tggcaatgca aaaagatgat      1920
     aggaaaaaga tgggtgctga caccaaaaac ggtgctttgg ttatacacgt cagtcatacg      1980
     tccagtcata acctatgggg cggtagtatg gtggacaaag accaaacaat caaccgcatg      2040
     caataaactt cagaggtgcc aaagactagc gtgcatggcg atgaccggca gcatgagaac      2100
     aacccccaca gccgctctag aagccctgct aaatttgaca cctctacaca tccacataca      2160
     acaggtagcc acaacaactg cgttgaggct gaaaacactg aagctatgga aacacaacag      2220
     gactccgcac accaccatcc ttgacacatt ggaagaaact acacccgtca tggatgccgt      2280
     acaggacctg atacccaaac aatacatctt cgaaaagaaa tataaaatac acctctcaga      2340
     ggacaacgat acatatagga aaaactcaca ctacctcatg atatacaccg acgggtccaa      2400
     gacggactta ggtacaggct caggagtatt ttcagaggac ttaaatatca aaatacacac      2460
     cagcttaggc acacaaaact ccatcttcca ggcagaatgn nnnnnnnnnn nnnnnnnnnn      2520
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2580
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2640
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2700
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2760
     nnnnnnnnnn nnnnnaacaa atagtagcta cgccctccac agcgagctct gggacaacac      2820
     tagcgattgc aggcagacca aagacgctct gcctaaaatc gatagacggc tctcgagcag      2880
     acttctcaaa ctcagcaaac aacagctacg attaattgta gcagcactca ctggccatgg      2940
     ccttttcaac aaacatctgt tcaacatagg tgtcactgac agtccattgt gcagagcgtg      3000
     catggaggaa gaagaaacag cgtcacacgt catacagcac tgccgagcgg tgactgaata      3060
     cagggttagg tatcttggtt cgccgagatc gctcccggag atcaccagca atataaaggg      3120
     tctgctgggg ttcttcggtg agctgggttg gctggagtaa tccatgtcct attctcacgc      3180
     aaaatacgcg ctagtcgtgg agttgcggaa accgtagccc ctactactac tactactact      3240
     ac                                                                     3242
//
ID   Loa-1_RPr   repbase;    DNA;    INV; 5485 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   LOA-type non-LTR retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5485
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3475-3475 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..1811
FT                 /product="Loa-1_RPr_1p"
FT                 /translation="MEFSNNKNKNPKPPDGGVPQVSEEGTPSGSVLRGGST
FT                 PDPKTHATGPQESVPGGSGNADPLETKALAKVSRKIKDLQISKGKLSGSQR
FT                 KKLAKLKASEDGREWFPKNVWRERRKALLSSNIVQQTEVQSVAPLVTSAGA
FT                 GERREVGVVKTPSPKTHQAPKRPRSEISTPSXGSEKTAARESKRVRFPEKE
FT                 LTGSFRDALSALKMAVVLDSYPNDLLSTEQADLLQXKLAEQICKNPGGIRP
FT                 QFRGCFLSRGALIVNCDNEVSRLWLERAVPELQVGEGARLRVGLARIVMRA
FT                 AKVAVWVSGAHKDASPSAVLESLNVQNEGLETADWRIINRKVEPRGQTLVF
FT                 DLSEQALGRLKRSNFELFLGLDVVKLRVVSKPIGGAADNDPPKLLEAAAGE
FT                 PPPQ"
FT   CDS           join(2009..3178,3117..5390)
FT                 /product="Loa-1_RPr_2p"
FT                 /translation="MEFCFRDQTAVKVKLRTEEGVKEIVVASTYLPYDSTA
FT                 LPPSEEMQHLTIQCRERGLQLLIGCDANSHNVVWGSSGTNQRGKQLLDFIL
FT                 ANNLFVINEGEEPTFHNSIRREVIDLTLGTNFVSTLVRNWHVSGVPSLSDH
FT                 MYIRFDVGFDCKEVVTYRNPRRTDWDSYRRDLSQNINTVRDNLRTRXDIDD
FT                 AAEXLQSVIMEAFRANCAETIMHTKRKVSWWNNQLMELRRKVRKXFNAAKR
FT                 RGTWEEYREALTSYNLAIRKAKRDSWRKLCEEVEMTSEGARLHRIISKNPG
FT                 XSLGTIRDEEGDXTKSGRDTLECLMRVHFPESRGQXDGETIVPDGGRGTXE
FT                 NWTAAKVCITXNKVVWAXSPLNPLDLMVFSLXSCSREKILLLLFYAGWYFP
FT                 CXLAAGKRYYYSYSMQANEGKSGPRLCPSDMEACKSYLYPQTWEETHTQAK
FT                 DFRPISLSSFLLKVLEKLIDLHIREVALKLRPLHVNQHAYQIGKSCETALH
FT                 CLVKELEASVFCKETALGVFLDIEGAFSNTSXGXISLAMERHGIDSTITRW
FT                 IGSMLTSRRITATLFGESLMITTVRGCPQGGVLSPLLWCMVVDDLIEMLDL
FT                 RGFTVLGYADDISVVVRGRHEIIVAELLQEALKIIERWCRRVDLSVNPSKT
FT                 TLVPFTRRRDKESYRNLEFFDKTLDVSGEVKYLGVILDSRLTWKAHLDKVT
FT                 LKAKQALCGITRTCGKTWGLRPKMTHWLYTRTVIPIITYGAVVWWRKTEQQ
FT                 TAIKALARVQRMACMLITGAFSSAPTAALEVLLGLPPLQFVIQAEARAGAY
FT                 RLARNGQWRRISSSIGHMNITDKVDPLPVIDMVGDSVCPRYSFETPFQVIL
FT                 RSRTEWRVNWTEQCQKGAMWFTDGSKMACGTGAGVYGAKPKVLIESALGRY
FT                 ATVFQAEVFAIKACAGENLRMNLRNREICIFSDSQAALKALSSFRTTSSLV
FT                 WECKKALDQLARHNKVRLEWVPGHVGIKGNEIADQLARNGASTPFIGPEPV
FT                 LGITRGAVREALRDWIWREHEKYWVMLPGVKHSKRVMPLLCKQRTKVTLGL
FT                 GRNQITLITGLFTGHGRFRKHLHKVGLISSEPLCRLCQEEEETASHLLFDC
FT                 VAIERLRYEIFGTLRPEEIVAQKELVGKALNLLRRGGFTY"
XX
SQ   Sequence 5485 BP; 1389 A; 1228 C; 1527 G; 1306 T; 35 other;
     aaggtcgtta tgactccggt tgaaagctta cgcgattccg gtagtccaac gacaagtcaa        60
     ccctcacttc ctagttagtg tggactggwa acgtagtctt tgatgctacg gctaacgggg       120
     ctctgacggg tcggtgtgtc tcccccatcg gcttcccctg ttccccttcc tttcttccct       180
     tctattcttt ccccgtccgg ttacatcaca tccttccttc ccgtagggag aagtggacta       240
     gccacttctt cagggaacct ggcatccctg cgggtgtccc agcctaacaa catgaacagc       300
     aacactcata caattgttac acttatacat ttacacatta cacttagggc cttgtggtgg       360
     tgtaccccca ccctaatcct taatcctaat tctacccttc cttttatcct gtctttccct       420
     ttccctttct actgtatccc tacccaagct gagatgggga ctcgtgtcga ggctgaatgc       480
     gtacagggta gtaaaacata tgtgcggtaa cgatcacctt ggggcaccgg gcgaaacccc       540
     attgtatttt agccttcttg tggcagtggg ggtctgtcac aggtgaccgt taatccccca       600
     tttctcgtgg gaacagaatg gagttttcaa ataataaaaa taaaaatcca aaacctccag       660
     atggcggagt tcctcaggtc tctgaggaag gaacaccgtc tggttctgta cttagaggtg       720
     gcagtacgcc agaccctaag actcatgcga cgggtcctca ggagagcgtt cctggtggga       780
     gcggtaacgc tgacccacta gaaacgaagg ctctcgctaa ggtctcgcgc aaaattaaag       840
     atctacaaat ttctaaaggg aaactgagcg ggtcccagag gaagaagctt gctaagctta       900
     aggcctctga ggatggmagg gaatggtttc cgaaaaacgt ctggagggaa aggaggaaag       960
     cgctgctctc ctccaatatt gtccaacaga cggaagtgca gagtgtggcc cctctggtca      1020
     cctcggccgg ggcaggtgag aggagggagg tgggtgttgt taaaactccc tctcccaaaa      1080
     ctcatcaggc ccccaagagg cccagatcgg agattagcac tcckagtasc gggtctgaga      1140
     agacggcggc gcgggagagc aagagggtga ggttcccaga aaaggaacta acaggctcct      1200
     ttagggatgc actctctgct ctcaagatgg ccgtcgttct tgactcctac ccgaacgacc      1260
     tkcttagcac ggagcaagca gatttgttac agckgaagct agctgagcaa atctgcaaaa      1320
     accctggcgg tataagaccc cagtttaggg gctgcttcct ctccagaggt gctctcattg      1380
     ttaattgcga caatgaggtg tcacgactct ggttggagag ggcagtcccg gagctccagg      1440
     tgggagaggg agctaggctg agggtgggct tagccaggat tgtkatgagg gctgctaagg      1500
     ttgcggtgtg ggtatcagga gcccacaaag acgcttctcc atccgckgtk ctggaaagtc      1560
     tcaacgtwca gaacgaggga cttgagacsg cggattggag aataatcaat aggaaggtcg      1620
     agcccagggg gcaaaccctt gtgttcgacc tttcggaaca ggccctgggc agactgaaga      1680
     ggtccaattt tgaactattt ttgggcctcg acgtagttaa actcagggta gtttcgaagc      1740
     ctattggagg agctgcggat aatgaccccc ccaaactgtt ggaggctgct gcaggtgaac      1800
     ctccaccaca gtaggagggg catctgcagc tctaacacac ttcatctgcg aagaagacat      1860
     cgccatagtc ctcattcagg aaccctggct agtacggggg cgtgtggcag gacttggcga      1920
     ggctaaaggt aagattkttt atgatcgaag cctggataat cccaggacgt gtatttacgt      1980
     tagggaagat attacgtctt tactgctgat ggaattttgt ttcagagacc agactgcagt      2040
     gaaggtgaaa ctacgtacgg aagaaggggt caaggaaatt gttgtggcct cgacctatct      2100
     tccatacgac tcaacagccc tccctccctc ggaggagatg caacatctga ccatccagtg      2160
     tagggagaga ggtctgcaac tactgattgg gtgtgatgct aactcccaca atgtggtgtg      2220
     gggcagttca gggaccaatc aaagaggtaa gcaacttctt gacttcattc ttgctaataa      2280
     tttgtttgtc attaatgaag gagaagaacc caccttccat aattctatac gtagggaggt      2340
     tattgactta actttgggga ctaattttgt atcgaccctg gttaggaatt ggcatgtatc      2400
     aggggttccc tcgctctcgg atcacatgta tattaggttc gacgttgggt ttgactgtaa      2460
     ggaggtggtt acttatagaa accccaggag gacggactgg gattcttata gacgggatct      2520
     cagtcaaaac attaatacag tsagggacaa ccttaggacc cggwcggaca ttgatgacgc      2580
     tgckgagags cttcagagcg tcatcatgga ggctttccgg gctaactgtg cggagacgat      2640
     tatgcatacg aaaaggaagg taagctggtg gaacaaccag ctgatggagc tccgcagaaa      2700
     ggtccggaaa ckgtttaatg cagcwaaaag aaggggtaca tgggaggagt accgtgaggc      2760
     cctcacttct tacaatttag ccattcgtaa ggctaaaaga gattcatgga ggaagctttg      2820
     tgaagaggta gagatgacct cggagggagc tagactccat cgtatcatct ccaagaaccc      2880
     agggwgttct ctgggaacca tcagggatga ggaaggggac ttmacgaaat cggggagaga      2940
     caccttggaa tgtctmatga gggttcactt tcctgaatcg agggggcagc asgatgggga      3000
     aaccatagtg cccgacggkg gtcggggcac takggagaac tggaccgctg ccaaggtctg      3060
     catcacctwc aacaaggttg tgtgggcgst gagcccttta aatcccctgg acctgatggt      3120
     attttccctg twctcttgca gcagggaaaa gatattatta ctcctattct atgcaggcta      3180
     atgagggcaa gtctggccct cggttatgtc cctcggacat ggaggcctgt aaaagttatc      3240
     tttatcccca aacctgggaa gagactcata cccaggctaa ggattttaga ccaattagtc      3300
     tatcatcgtt cttgttgaag gtgctagaaa aactgattga cctgcatata agggaggtag      3360
     ctttaaagct acgacccctg catgtcaatc agcatgccta ccagataggc aaatcctgcg      3420
     agacagccct ccattgctta gtwaaggagc tggaggcctc tgtgttttgc aaggagacag      3480
     cgctgggkgt gtttctggac attgagggag cgttcagcaa cacttcctwc ggtkcwattt      3540
     ccttggcgat ggaaaggcat ggtatagact ccacaatcac aaggtggatt ggtagcatgc      3600
     taacgtcaag gagaattaca gcgactcttt ttggggaatc actgatgata acaaccgtca      3660
     ggggatgtcc gcagggaggg gttttatctc cgctcctgtg gtgtatggtc gttgacgatt      3720
     taattgagat gctagacctc cgtgggttca cggtccttgg ctatgcagat gacatttctg      3780
     tggtagtcag ggggaggcac gagattatcg tkgctgaact cctgcaggaa gcactcaaaa      3840
     ttatagaaag atggtgcaga agagtggatc tctctgtgaa cccttctaaa actactctgg      3900
     twccctttac taggagaagg gacaaggaga gctacagaaa tcttgaattt ttcgataaaa      3960
     cgctggatgt gtcaggcgaa gttaagtatc taggtgtcat tttggactct agactcactt      4020
     ggaaggcaca tctggataaa gtcacactta aggctaaaca ggccttatgt ggcataacca      4080
     ggacctgtgg gaagacttgg ggtcttcgcc caaaaatgac ccactggcts tatacaagaa      4140
     cagtcatacc tatcatcacc tacggagcgg tggtgtggtg gaggaagact gaacaacaga      4200
     cggccataaa ggctcttgct agggtacaaa ggatggcctg tatgttgatt acaggggcct      4260
     ttagcagtgc tcctactgct gcgctggagg tactgctggg gttgcctccg cttcagtttg      4320
     ttattcaagc ggaggcaagg gctggcgcgt acagactagc gaggaatgga caatggaggc      4380
     gcattagctc ctctattggg catatgaata ttacagacaa ggtcgaccct ttgccggtca      4440
     tagacatggt tggggacagc gtctgtccta gatacagttt cgagactccg tttcaggtga      4500
     tcctcagatc gaggactgaa tggagggtaa actggacaga acagtgccag aagggagcca      4560
     tgtggtttac ggatggctcc aagatggcct gcgggaccgg agctggagtg tatggggcta      4620
     aacctaaggt actcattgag agtgctcttg ggagatatgc caccgtcttt caggccgagg      4680
     tttttgccat taaagcttgc gctggggaaa atctgcgaat gaatcttaga aatagggaga      4740
     tttgcatttt ttcggacagt caagcggcac tgaaggccct ctcttccttc agaactacct      4800
     cttccctggt ctgggaatgt aaaaaggccc tagatcaact ggctcggcac aacaaagtcc      4860
     gactggagtg ggtgccgggc catgtgggga ttaaggggaa tgaaatagct gatcagttgg      4920
     ccaggaatgg agctagtact cccttcattg gcccggaacc agtcctgggg atcactaggg      4980
     gtgcagttcg tgaggctctc agagactgga tctggagaga acatgaaaag tactgggtga      5040
     tgcttcctgg ggtcaaacac agcaagaggg ttatgccctt gttgtgcaaa caaagaacca      5100
     aagtgactct aggtttgggc aggaatcaga tcactctgat tacaggccta ttcacagggc      5160
     acggaaggtt caggaagcac ctgcacaagg tagggcttat tagctcggaa ccgttgtgca      5220
     gattgtgcca ggaagaggaa gaaacggcct ctcacctgtt attcgattgc gttgcaatcg      5280
     agagactgcg ctacgaaatc tttggtacct tgagaccaga ggagattgta gcgcagaagg      5340
     aactggtagg gaaagccctc aaccttctta gaaggggagg tttcacctac tagacttaag      5400
     ggaaggcaca ataagcctct tggtggctgc agtgccgtgg ggcatgggtc ccgtcccgcc      5460
     gtgtaaaatc taaatctaaa atcta                                            5485
//
ID   Loa-1_SIn   repbase;    DNA;    INV; 5126 BP.
XX
AC   .
XX
DT   21-NOV-2011 (Rel. 19.02, Created)
DT   21-NOV-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   Loa-type retrotransposon sequence - a consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5126
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 471-471 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1378
FT                 /product="Loa-1_SIn_1p"
FT                 /translation="GVELPTGRVSGWRIGERPEGPESPGDKILRGIRVPPV
FT                 SGGYNWPPRCKTLRGVRKAATADQLPKPSCKLSWRRLRGTLGHQATPQSNS
FT                 LTHACGALRGRTFCSLATRGTXMESXNQLKDAVKEMEGSQCGTSSAEAAEG
FT                 XADGAHLGSGGATAVGSGTQAEAVGADGARPGSGGATAAVSEKSSAPAAGP
FT                 LGKRNRSGAEKRRAKRERERSQCGTSSGTVTPPVATPREREGHAGGKRRKG
FT                 STDTPPSAEGPAKKHRAQHTGTYAEAADPLTRVIIPEGYPEEEITAERLAL
FT                 LKLAVSRAISGIREGPIPCFRRTFLRGGAAVVLGRDEASLIWLAEQMGNIS
FT                 PWENAKLKVVGPEVLQRQHRAVVWVPGAPDEPAAVLERLERQNPGLSTGSW
FT                 KIMAENVGATRDGRNLVLRIPESSVLKLKALDFKPYLGLDQVTFKVSGAQG
FT                 GDREGEKGPPMDES"
FT   CDS           1345..5022
FT                 /product="Loa-1_SIn_2p"
FT                 /translation="GGREGAPYGRIVKFDRPGVTFTQINLHHSKGASAILS
FT                 RKQAAVHTAISLIQEPWLVRGRISGVAACGRXFKSPTAEKPRACVAVKGVD
FT                 ARLIPHLCSRDVVAVELDVADSSGSRRRVVVCSAYFPHDEGAPPPPEPVTR
FT                 LVEYCQSERLPLIVGCDANSHHTVWGSTDTNDRGRRLLEFLASTDLEILNR
FT                 GNEPTFCTAVRREVLDLTVCSRCISRDVVGWRVSREPSLSDHRQITFKLAW
FT                 ARGEVATFRDPRRTDWDSYRVDLKCYLEGFPRRHGTEEELELCVDHLQRAL
FT                 VESYEKNCPERAVKNSRGNSWWSPKLQELRSAARRAWNRARNTGRQSDWEL
FT                 HRRAQKDYRDSVVRAKKRSWKEFCESVEGVPETARLCRILARNPDAVLDSI
FT                 SLPDGTMVTGERCLVHLLEASFPGFRREHGELFAHDAAGSRRARKADWGLA
FT                 ASIVKPGKVKWAINTFKPFKSAGPDQVFPALLQEGLELVVGPLTRTLRACL
FT                 ALGHTPSAWKLARVVFIPKAGRASYSSAKDFRPISLTSFLLKTLEKLVDAY
FT                 VRDVVLPRRPLHRAQHAYRMGYSTETALHATVSFIEGQLERGGYAVGTFLD
FT                 IEGAFNNTPHKVVCEEALHRGVPEKLVEWIRGMLGRRVVASLGTTRVSGWV
FT                 ERGCPQGGVLSPLLWCLVVDGLLEGLSERGFFVQGYADDVALLARGPFLGP
FT                 LLELMQNALGTVERWCRGTGLSVNPLKTGLVVFTRKYKVGTIKGPIFEGTR
FT                 LAPAESVKYLGVILDKKLSWREHLESRCKSLCSYFWMCRRIVGQTWGLKPR
FT                 MVCWIYTAILRPRLTYAAVVWWPRARKKAAVVALEHVRALILRGALGAMRT
FT                 TPVAAMGILLGIEPLHQVVVGAAAIAAHRLACELKWKEGTAHTRFPSGVLT
FT                 DSIFGMRQDRMPAVRALDRRFKVQVTGLADWEEPGAPVQAWDGDVWFTDGS
FT                 KTGTSSGAGIVCRQRRVAESLPLDGYATVFQTEIVAILRCAQLALEGRETG
FT                 GRVRICSDSQAAIKALEAPICTSRLVWDCRNALEKLARDKEVIVTWVPGHS
FT                 GIEGNEEADRLARAASRMEVFGPGPALGVPFCLGRRRIRAWLRSEHLEFWK
FT                 NELRTKCRQAGALLGETPSEGLVGDIRSLSRRDARLVVQILTGHGALNYHM
FT                 HRLGRSDTAECRACGEEEETSLHILCDCPAYAGLRLKLLGSAFPEPGQISR
FT                 LPMRDLSLFWRESGLP"
XX
SQ   Sequence 5126 BP; 1077 A; 1308 C; 1791 G; 944 T; 6 other;
     gggggttgag ctacctaccg ggcgcgtctc cgggtggcgg ataggagaac ggccggaggg        60
     gcccgagtcc cccggggata aaatcctgcg tgggattagg gtacctccgg ttagtggcgg       120
     ctataactgg cctcccaggt gtaaaaccct gcgtggggtc aggaaggccg ctaccgcgga       180
     ccagctccct aagccaagct gtaagctatc gtggcgacgg ctgcgtggca ctctggggca       240
     ccaggcgaca ccccagagta atagccttac ccacgcatgc ggggctctgc gtgggcggac       300
     cttttgttcc ctagctactc gtgggactta natggaatcg ttnaaccaac tcaaagacgc       360
     ggtgaaggag atggagggct cgcagtgcgg gacctccagt gcggaggcgg cggagggggn       420
     tgcggacggg gctcatctgg gctctggagg cgccaccgcc gtcggctccg gcacacaggc       480
     ggaggcggtg ggtgcggatg gggctcgtcc gggctccgga ggcgccaccg ccgccgtctc       540
     agagaaaagc tccgcgccag cggcgggccc tcttggcaag aggaaccgct ctggtgcgga       600
     gaaaaggagg gccaaacggg aacgagagag gtctcagtgc gggacctcct cgggcaccgt       660
     gacccccccg gtagcaacgc cgagggagag ggaggggcac gccggcggca aacgccggaa       720
     gggctccacg gacactcccc cttcggcgga aggacccgct aagaagcata gggctcaaca       780
     tactgggact tatgccgagg cggcggaccc tttaacaagg gttatcatcc ccgagggtta       840
     tcccgaggag gaaatcactg ctgagcggct ggctcttttg aagctggccg tcagcagggc       900
     aatcagtggg atccgggaag gacccattcc atgcttccgt cgtaccttcc ttaggggagg       960
     ggccgcggta gtcttaggca gggatgaggc gtccctaatc tggctcgctg agcagatggg      1020
     gaacatctct ccctgggaaa acgccaagct caaggtggtg ggcccggagg tgcttcaaag      1080
     gcagcacagg gccgtggtct gggtcccggg ggctcccgat gaaccggccg cggtcctgga      1140
     gcggctggag aggcagaatc ctgggctcag caccgggagc tggaagatta tggctgagaa      1200
     cgtaggggct accagggatg gtaggaacct ggttctcagg attccagagt ccagcgtcct      1260
     caagctgaag gcgctggact tcaagcccta cctcgggctc gaccaagtca ccttcaaggt      1320
     gagcggggcc caaggtgggg atagggaggg cgagaagggg ccccctatgg acgaatcgta      1380
     aagttcgatc gtcccggggt gacctttact cagatcaact tgcaccacag caaaggggcc      1440
     tcggcgattc tgtcgaggaa acaggctgcg gtgcacacag ccatttcact gatacaagag      1500
     ccttggctcg tccggggccg tatcagtggc gtggcagcat gcgggagant atttaagtct      1560
     ccgacagccg aaaagcccag agcctgcgta gcggtgaagg gcgttgacgc tcgactaatc      1620
     ccgcatttat gttccagaga tgtggtggcg gtcgagcttg acgtcgccga ttcctcggga      1680
     agcaggagga gggtggtggt gtgctccgcg tattttcctc acgacgaggg ggccccgccg      1740
     ccgccggaac cggtgaccag actggtagag tactgccaga gtgagcggct tcccctgata      1800
     gtggggtgcg atgctaactc gcaccacacg gtctggggna gcacggatac caacgataga      1860
     ggtaggaggc tgttggaatt tctagcgtcg acggacctgg agattctcaa cagaggtaac      1920
     gagcccacct tttgcacggc ggtgaggaga gaggttctcg atcttactgt ctgttctagg      1980
     tgtatatcga gggacgtggt cggatggagg gtctcgcgcg aaccttcact gtcggaccat      2040
     aggcaaatca ccttcaagct ggcttgggcc agaggagagg tggcgacgtt cagggacccc      2100
     aggaggaccg attgggactc ctatcgggtg gacttgaaat gctatctcga gggcttccca      2160
     aggaggcacg ggaccgagga ggaactggag ctctgcgtgg atcatctgca gagggctctg      2220
     gtggagagct acgaaaagaa ctgcccggag agggcggtta agaactccag gggcaactcc      2280
     tggtggagtc ccaagctgca ggagctcaga agtgcggctc ggagggcctg gaatagggcc      2340
     aggaacacgg gccgccagtc ggactgggaa cttcacagaa gggcccagaa agactacaga      2400
     gactccgtgg taagggccaa gaaaagaagc tggaaagagt tctgcgagtc ggtagagggc      2460
     gtgcccgaga ccgcaagact atgcaggatt ctagccagaa acccagacgc cgtcctggac      2520
     tccattagtc tccctgatgg gacaatggtg accggggagc ggtgtctggt gcacttgctg      2580
     gaggccagct ttccgggctt tcgcagggag cacggngaac tgttcgccca tgatgcggcg      2640
     ggctcgcgca gggctcgtaa agcggactgg ggattagcgg ccagcattgt caagcccgga      2700
     aaagtgaaat gggcgataaa caccttcaaa ccctttaagt cggcgggacc agatcaagtc      2760
     tttccggctc ttctacagga ggggctggag ctggtcgtgg gacctctgac aaggactttg      2820
     agggcatgtt tggctctggg ccatacgcct agcgcatgga aactagcgag agtggtattc      2880
     atcccgaaag cgggaagagc gagctactct tctgctaaag acttcagacc gataagtctg      2940
     acttcgtttc tcctgaagac tctggagaaa ttggtcgacg cgtatgtgag ggacgttgtt      3000
     ctcccgcggc gccccttgca ccgcgcgcag cacgcgtacc gcatgggcta ctccacggag      3060
     acggctcttc atgcgaccgt gtcgtttatc gaggggcagc tggagagggg cggctatgcg      3120
     gtgggcacct tcctagatat agagggtgct ttcaacaaca ccccgcacaa ggtggtgtgt      3180
     gaagaagcgt tgcacagggg tgtgccggag aaactcgtgg agtggatccg gggcatgcta      3240
     gggcgacgag tcgtagcttc gctgggaaca acgagggtca gtggatgggt ggagaggggg      3300
     tgcccccagg gcggggtgct ctctccactg ttatggtgcc tggtggtgga tgggctgctc      3360
     gaggggctga gtgagagggg cttcttcgtg cagggctacg ctgacgacgt ggctctgcta      3420
     gcgcgaggac cctttctcgg gcctctcttg gagctcatgc agaacgcact gggaacggta      3480
     gagcggtggt gcagggggac cggtttgtca gtgaatccgc tgaaaacggg gctcgttgtt      3540
     ttcactcgca aatataaagt gggcactata aaagggccca tctttgaagg tacaaggcta      3600
     gccccagctg aatcagtgaa atatctggga gtgatcctag ataagaagct gtcctggagg      3660
     gaacatcttg aaagccgctg taagagtctg tgctcttact tctggatgtg caggagaatc      3720
     gtgggccaga cgtgggggct gaagcccagg atggtctgtt ggatctacac tgcaatactt      3780
     cgacccaggc tcacctacgc agcagttgtg tggtggccta gggcgcggaa gaaagcggcg      3840
     gtggtggcgc tcgagcacgt cagggctctg attttaagag gggccctggg tgcaatgcga      3900
     accacgccgg tggcagccat gggcattttg ctcgggattg aaccacttca ccaggtggtg      3960
     gtgggggcgg cggcgatcgc tgcacaccga ctagcctgtg aactgaagtg gaaggagggg      4020
     actgcgcaca ctaggttccc cagcggcgtg ctgaccgact ccatcttcgg aatgaggcaa      4080
     gacaggatgc cagcagttcg ggccctggac aggcgcttta aagtgcaggt cacagggctc      4140
     gcggactggg aagaacccgg ggcaccggtt caggcctggg acggggacgt ctggtttaca      4200
     gatggctcca agacgggtac gagctccggc gcgggcatcg tttgccgaca aaggagggtg      4260
     gcggaaagcc tgcccctgga cgggtacgcc acggttttcc agacggagat cgtggcgatc      4320
     ctaagatgtg cccaactggc cctggaaggg agggagacag gtgggcgcgt gagaatatgc      4380
     tcggacagtc aagctgctat caaggcactc gaggctccga tttgcacctc gcggctggtc      4440
     tgggactgca ggaatgcact ggagaagctg gcgagggata aagaagttat cgtgacctgg      4500
     gtccccggtc actcggggat cgagggcaat gaggaggccg atcggctcgc cagggccgca      4560
     tcaagaatgg aggtgttcgg gccgggaccg gcgctggggg tccctttctg tctaggcagg      4620
     aggaggatcc gggcctggtt acggagcgag cacctcgagt tttggaaaaa cgagctgagg      4680
     accaaatgtc gacaggccgg ggctctactg ggggaaacac ctagtgaggg cctggtcggg      4740
     gacataaggt ccttgagcag aagagacgcc aggctagtag tgcaaatact gactggccat      4800
     ggggccctca attaccacat gcacaggctg ggccgatccg atacggccga gtgtagggct      4860
     tgtggggagg aagaggagac aagtctccac attctttgtg actgtccggc ctatgcgggg      4920
     ctgagactaa aactgctagg ctcggcattt cccgagccag ggcagattag caggctacct      4980
     atgagggacc tgagtctctt ttggagagaa tcggggctcc cgtaagtggc gaacgactgg      5040
     agggagacac aatggacaat agtctgcgtg ccgtaggcgg atcttcgacc cgaggaccgc      5100
     cccctcagtt ccattattat tattat                                           5126
//
ID   LOA-2B_DAzt repbase;    DNA;    INV; 5174 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DAzt;
KW   LOA-2B_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5174
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 881-881 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. The consensus is ~96% identical to
CC   that of LOA-2_DAzt.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..1789
FT                 /product="LOA-2B_DAzt_1p"
FT                 /note="DUF4780."
FT                 /translation="MYNNNNKNKKQQKNKQESDTPQMSNGSNPPHGKAAAQ
FT                 RPGPTSSKAGQTCKAESAGVNPSGSHPEHGVGGGPSPNTDTSERRLSNIAA
FT                 AQPSGKVEGDDLPSTSAQAKKHTYAERRSAGHILRRQNASKEASPSADWLK
FT                 KVEWATTVLPHFTMVSQPKRQRSQETPGPAAKRSRVTPNISFAQIAKERTL
FT                 IGVLDKGSAEGKIPRSQWKWVEAALADRCFELLEKDPGPPPVCKDMGWFQG
FT                 SIKVIACDDERSVKLYKAAVAQIGEVYAGANLVAVNWSEVPSRPRARIWVP
FT                 ATIKEPERILKMLQRCNPTLPTQDWRVVKVEETKGPTNQAVIILNKESLAP
FT                 IEAAKGELNFGFSSVAIKVYKSDAASADARPVDNPVVQDVASEIEAPDNEL
FT                 EPTKEGYSSDAELMRDFEAMCRDEVSDDSDADTTVVEILEDVSEAPSNKSP
FT                 PL"
FT   CDS           1719..5042
FT                 /product="LOA-2B_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MPTLQWWRFLRMSLRLLQINLHHCKAASAALILRLDA
FT                 SGADVVLIQEPWIVGAKVCGLATREYKLIVPQTEGKTRTCILARKHLNIFL
FT                 LHNFSNGDNTAVSLELKRTHLRLMSSYMAHEESDPPNDLVCKLASNSERSN
FT                 ISLLIGCDANAHHTQWGSTDTNVRGESLFSFILNSNLTICNRGNDPTFIIK
FT                 NRQEVIDLTLVSHNLLDKVKSWRVLEDHSFSDHRYIETTLSLESPKPTDYI
FT                 NPRKTNWVKYSSVLEYLLPNKAPISPDTQDELDRTVNRFTKACNEAFTAAC
FT                 LPHKTRGKQKPPWWSKQIDILRKSCRTLFNRAKSANEEKHWVDYKVSLAQY
FT                 KKETRRAKRASWQKFCSEIEETSEAARLRKLLSKTTPSVGYLKRNNGTWTN
FT                 SSEESLHVLLETHFPGCTTIDPAAQIRRGGQIATMDHILTKRNISWAVNSF
FT                 NPFKSPGPDHVIPAQLQKAGDSAINWLQNIFRKILAVGTIPQEWLKAKIVF
FT                 IPKAGKASHSTPKDYRPISLSSFLLKTFERLVGLHLRTIISPQMLSGAQHA
FT                 YRKGRSTETALHEVVSYIEKSLHLKEYSLIAFLDIEGAFKVVPTRMTSEWT
FT                 KSRGLGVNPSKTELVLFTNKYKVPPLNPPLLNECRLSFSDSASYLGLVIDK
FT                 KLNWNLNVKDRVKKATTALYSCKKAIGLXWGMNPSVVQWIYRAIVRPILLY
FT                 GVTVWWPALSKGSITKQLGKVQRTAALCISGALRTTPNDALNAILSLQSLE
FT                 LAGKERAEIAAIRLRDSGQWTSHLRGHSSILTSRTVPTKTDYCVPREHTIT
FT                 PFNVIIPSRDEWLGGPPGQDMAISIFTDGSKLDNRVGGGIYSEQLEIRHSF
FT                 RLPDHCSVFQAEVIAIMEALKLLQTAAKASLSTTTVNIYSDSQAAIKSLHA
FT                 ISSNSATVTNCRKSLHEMAQQFDISLIWVPGHRDIEGNCKADELARSGTTI
FT                 PLLQDKEDICMPMATCKLIIKEIYMRRADNAWRSAPLCRITRQTWPAIDRK
FT                 RTLELCKLGRKRCSVVIRSLTGHWLIGSHANRLGAPYNDFCRSCRDEEEEE
FT                 TVEHLFCSCPALSRRRLQYLGLPYVSDISEMSKICPRKIANFIRASGWDNC
FT                 "
XX
SQ   Sequence 5174 BP; 1498 A; 1386 C; 1311 G; 975 T; 4 other;
     gctgaggcca ccggacgggt cgcaggttgc ggatagcgaa aggcctaccc ccctaaaaga        60
     ggtaggtcag ctgtgaataa tcggtcatct ctaggcagat gaccgaaaat aagcagtccc       120
     ggacagccag cgggtgttcg cgaagcagca acactgacga tgcgcttgtg gtgccgcctc       180
     gtataagtag ctcacacact cccactcccc acacamcacc tacccacatc ccawcctcca       240
     cactcacctc acaccgggct gggctaaggt gtcattcgac ccgtgccgag agtcagcctg       300
     gctgggggcc cggttcaaaa actagcccag tctcgaacgg agagctcagg gacttggcag       360
     ccccctgttc taatgatgcc ttacccgggc aacgtggatc tctgcccggg ctgaccgttc       420
     cctttctctg catctcgtgg gatgtaacat gtataacaat aataacaaaa ataaaaaaca       480
     acaaaaaaac aaacaagagt ctgacactcc ccaaatgtca aacgggagca atcccccgca       540
     tgggaaggca gcggcccaaa ggcctggccc gaccagctca aaagcaggac agacctgcaa       600
     ggcggaaagc gctggggtga atcctagtgg gtcccatccc gaacatgggg tgggtggcgg       660
     accatctccc aacactgaca cctcggaaag gcggctaagc aatattgcgg ctgcccaacc       720
     ctctggtaaa gtggaggggg atgatctgcc ttcaaccagc gcccaggcca aaaagcacac       780
     ctatgccgaa aggaggagtg cagggcacat actccgtcgg caaaatgcca gcaaagaagc       840
     cagtccatca gctgactggc taaagaaggt ggagtgggcc acaacggtgc tcccacactt       900
     cacaatggtc tcacaaccca agagacaacg gtcgcaagaa acacccggtc cggctgcgaa       960
     aaggtcgagg gtgacgccaa atatctcctt cgcgcagatt gctaaggaga ggacgctgat      1020
     tggtgtcctc gataaaggca gcgcggaggg caagatccca aggagccaat ggaagtgggt      1080
     ggaagcggca ctggccgacc gctgcttcga gttgctcgag aaggacccag ggccaccgcc      1140
     agtctgcaaa gacatggggt ggttccaggg tagcattaaa gtcatagcct gcgacgatga      1200
     gcgctccgtg aagctgtaca aagcagcggt ggcgcagatc ggagaggtct acgctggggc      1260
     gaatctagtc gcggtaaatt ggagcgaggt gcccagcaga ccaagggcca gaatatgggt      1320
     gccggctact attaaggagc ctgagcgcat cctcaagatg ctgcagaggt gcaacccaac      1380
     actgccaacc caagattgga gggtggtcaa ggtagaggag acaaaggggc cgacgaatca      1440
     ggccgtcatc atcctcaaca aggagtcgct ggcccccata gaggcagcaa aaggagagtt      1500
     gaatttcggc ttcagctcgg tcgccataaa ggtgtacaag tcggacgctg cctcggccga      1560
     tgctcgtcct gtcgacaacc cagtcgtgca ggatgttgcc tcggagatcg aggcacccga      1620
     caacgagctg gagccgacaa aagaaggcta ctcctctgac gcagagctga tgcgtgattt      1680
     tgaggcgatg tgtcgagacg aagtatccga cgactcagat gccgacacta cagtggtgga      1740
     gattcttgag gatgtctctg aggctccttc aaataaatct ccaccactgt aaagcagcat      1800
     ccgctgcact catactccgc ttggatgcaa gcggagccga cgtcgtccta atccaggagc      1860
     cttggatagt cggagccaag gtctgtgggt tggcgacgag agagtacaag ctcattgtac      1920
     cccaaaccga aggtaaaact cgtacctgca ttcttgcaag aaagcacctt aatatctttc      1980
     tgctacataa cttcagcaat ggcgacaata cagcggtaag cctagagcta aagcggacac      2040
     atctgaggct gatgtcgtcc tacatggccc atgaggaaag cgatcctccc aatgacctcg      2100
     tctgtaagtt ggccagcaac agcgagaggt ccaacataag cctactaata ggctgcgacg      2160
     ccaatgctca ccatactcaa tgggggagca cggacacaaa tgtaaggggt gagtcacttt      2220
     ttagctttat cctaaactcg aacttaacaa tatgtaacag gggtaacgac cccactttta      2280
     ttataaaaaa ccgacaggag gttattgacc tcacactagt atctcacaat ctgttagaca      2340
     aggtcaaaag ctggagagtc ctagaggacc attccttctc tgaccatagg tatatcgaga      2400
     cgactttatc cctcgagagc cctaaaccca ccgactacat taaccccagg aaaaccaact      2460
     gggttaaata tagctcggta ttggagtacc tactccccaa taaagcacca atcagcccag      2520
     acactcaaga cgagttagat cgtacagtga acaggttcac gaaagcatgc aacgaggcct      2580
     tcacggcggc ttgcctgcca cacaagacaa ggggtaaaca gaaacccccc tggtggtcga      2640
     aacaaatcga catcctaaga aagagctgca ggactctctt taacagagcc aaaagcgcta      2700
     acgaggagaa acattgggta gactacaaag tcagtcttgc ccaatacaaa aaagaaacac      2760
     gaagagcaaa aagggcctct tggcaaaaat tctgctcgga gatagaggag acgtcagaag      2820
     ccgcaaggtt gcgcaagctt ctctcaaaaa ccaccccctc ggtagggtac cttaaaagga      2880
     ataacggtac gtggaccaat tccagcgagg agtcgctcca cgtactgctt gaaacccact      2940
     tccctgggtg cacaaccatc gacccggcgg cgcaaatccg cagaggaggc caaatagcca      3000
     cgatggacca catccttacc aaacggaaca taagctgggc ggtaaacagc tttaatccgt      3060
     tcaaatcgcc aggtccggac catgtcattc cggcccaatt gcaaaaggcc ggagactcgg      3120
     ctataaactg gctacaaaat atcttcagga agatactggc ggtggggacc ataccacaag      3180
     aatggctcaa ggcgaaaata gtctttatcc ccaaagcggg aaaggcctcg cactcaactc      3240
     caaaggacta tagaccaatc agcctatcgt cctttctcct caaaacattc gagagactgg      3300
     tcggactaca tctgagaacg attattagcc ctcaaatgtt gtcaggagca caacacgcct      3360
     accggaaagg aagatccacg gaaacggcgc tccatgaagt agtctcatat atagagaaat      3420
     ccctacacct caaggagtac tctcttatag cctttctcga tatcgaggga gcctttaaag      3480
     tagtgcctac gaggatgacg tcagaatgga caaaatcgcg aggattggga gtaaatccct      3540
     caaaaacgga gctcgtgcta ttcacaaaca agtacaaggt tccgcccctt aaccctccct      3600
     tactaaatga atgtaggctc tccttcagcg acagcgctag ttacctaggg ttggtaattg      3660
     acaagaagct taactggaac ctgaacgtta aagacagagt gaaaaaggct acgacagccc      3720
     tatactcttg caaaaaagct attggcctga aktggggcat gaacccaagc gtagtccaat      3780
     ggatataccg ggcaatagtw agaccaattc tactctacgg agtcacagtt tggtggccgg      3840
     ccctatcaaa aggatcgata accaaacaac ttggcaaggt tcagcgaacc gcagcattat      3900
     gcattagtgg agcactacgc accaccccga acgatgcact aaacgccatc ctaagtctcc      3960
     agagcctcga gcttgcggga aaagagaggg cagaaattgc agcgatacgg ctgagagact      4020
     ccggacaatg gacgtcacat ctcaggggtc actcatcaat acttaccagc agaaccgtcc      4080
     ctacgaagac ggactactgc gtcccaaggg aacacactat cacccccttc aatgtaatta      4140
     tccctagcag agacgagtgg cttgggggac caccaggcca ggacatggcc ataagcatct      4200
     tcacagacgg ctcgaagctg gataacagag ttggaggagg aatttactcc gaacagctcg      4260
     aaattaggca ctccttcagg ctcccagatc actgcagtgt gttccaagcg gaagtcattg      4320
     cgatcatgga ggcactgaag ctccttcaaa cagccgcaaa ggcttcatta tcaacaacaa      4380
     ctgtaaacat ttacagcgat agccaagctg cgatcaaatc acttcacgcg atttcttcga      4440
     actcggcaac agtgacaaat tgccgcaaat ctcttcacga gatggctcaa caatttgaca      4500
     ttagcctgat ttgggtcccg ggtcaccggg atatcgaagg caactgcaag gcagacgagc      4560
     tggccagatc tggcaccaca ataccccttc tccaagataa ggaggatatt tgcatgccaa      4620
     tggccacctg taagcttatc ataaaagaga tatatatgcg acgggcagac aatgcgtggc      4680
     gctcagcacc attatgtcgc ataacccggc aaacatggcc ggccattgac aggaagcgca      4740
     cactagagct ttgtaagctc ggcagaaaaa ggtgcagcgt agtcatccgc tccctcacgg      4800
     ggcactggct gataggctcc cacgctaata gactgggagc cccatataat gatttttgcc      4860
     gaagctgtag agatgaggag gaggaggaaa cggtagaaca cctgttctgc tcctgtccgg      4920
     ctctcagcag gagaaggcta caatacctgg gcttgcccta tgtctcagac atttcagaaa      4980
     tgtccaaaat ctgtcccaga aagattgcaa acttcataag agcatcaggt tgggataact      5040
     gctgacatgt tcggttctca tgaggtggga aaaacagggg agcacctcct gcggtatcac      5100
     aacgggccga aaccggccca agtgcgacgg gctcctgtgg agcctgacag ccgccttaac      5160
     ctaacctaac ctaa                                                        5174
//
ID   Loa-2B_DEl  repbase;    DNA;    INV; 4745 BP.
XX
AC   .
XX
DT   29-JUN-2021 (Rel. 26.08, Created)
DT   29-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2B_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4745
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4601-4601 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           437..1684
FT                 /product="Loa-2B_DEl_1p"
FT                 /translation="MAKRGLVRGARRDLLLXGPXAKRSKVQPNLSFADITR
FT                 DRILIGLVDEGNPGGRIPKNQWKAVEEKLAILCMALLRDFPQPTPCCKDAG
FT                 WFQGSVKVVACDSQRSSCCRGAVPNLPTHDWKVVKVEQHEGPVSQAIVVLN
FT                 KESVSPIEAAHGELNFGFSAIRVKVYKGDSSAKEDPVGRVNRRRRPPSDDE
FT                 EPTSRWWRETLQMSLRLLQVNLHHSKAASAALLLRLADGGADLVLVQEPWV
FT                 VGGKVSGLGTKEFKLLLDPKGGKIRTCILAKRHLSIFLLHNYSNGDNTVAS
FT                 LELPAATIRVTSTYMAFEKEGPPDELVRXLVEESEALNIGLVIGCDANAHH
FT                 TQWGSPSSNNRGESLFNFILGSTYSYATGVTPPPSSQKIAKRSLTSPWCQA
FT                 VCLKKSEIGKSQASTPFQTTDS"
FT   CDS           join(1864..1887,1841..2122,2097..3224,3202..3663,
FT                 3468..3758,3762..4613)
FT                 /product="Loa-2B_DEl_2p"
FT                 /translation="MASRINLPGPSQKPAIWPLESTYPKCKPRGSKKPPWW
FT                 TQKLSELRSSCRTLFNRAKAGNEDLKWQQYKLELASYKKAIRKGKRSAWQT
FT                 FCSNIEEINRCSSARKSTDAARLRKILSKTTPSLGYLKKPDGSWSDSSEET
FT                 LSLLLDSHFPGSLPVERLPENQSGSSIDLETLLSERNIRWAINSFKPFKSA
FT                 GPDHLSPAHIQNAGQLAVNWLKKIFRTILKIGTLPSTWRETKVVFIPKAGK
FT                 ASHTTTKDFRPISLTSFLLKSFERLIGLHIRSVMDSKQLSAAQHAYSKGKS
FT                 TESALHAVVSQIEKSLNHKEYALVAFLDIEGAFNNVLPAAITEPLTDLGVE
FT                 FQVVELIHKLLMSRMVTSTLGTSTQTRFVNRGTPQGGVLSPLLWNIAVNKL
FT                 LCNMEGGGCKVVAYADDVAIIFSGKFPQTLCDLMTAKLKILSDWTTERGLG
FT                 VNPSKTELVLFTNRYKVPQLNPPTLNNCLSLFQITVSLSFNDNARYLGLVL
FT                 DKRLTWRLNSQENEKGNNCPLFLQKSHRNEMGHVPEIVNWIHTAIVKPILL
FT                 YGVSIWWPALMKQTTTANLNKVQRMASLCISGALRTTPNEALNAILNLPSL
FT                 DLAGMERAKIAAVRMRDLGQWSCQDTPARHNDPTQGSTNGILMHKRSPSHH
FT                 PQRGAKCYSEPSQPGLSRHGAGQDSCGSNEGLRAMVMPGYSSKTQRSHLKR
FT                 IYANQLNTATPPLKHCSQPEKTGSKVYRAIEAVNFYTDGSKLNNQVGGGIY
FT                 SDQLNIRKSFRLPDHCSVFQAEVYAINEALLLLNDANCQKKWVNIYSDSQA
FT                 AIRSIISTNTNSQTISNCRKSLHEMALQFKVYLIWVPGHRNIAGNCIADEL
FT                 ARHGTTVPLLPDKENIGMPMATCKLNIKNKYKELASLAWTHVRHCRISRQT
FT                 WPIIDAKRTSELLKLNRTECGMLIRVLTGHWLVGTHASRLGAPQNDFCRSC
FT                 RDEEEEETVEHLFCSCPALCRSRLYHLGNPFMSSLSELANISLKRIIKFMK
FT                 ATGWELC"
XX
SQ   Sequence 4745 BP; 1413 A; 1209 C; 1144 G; 973 T; 6 other;
     ttccctttct ccgcaactcg tgggattcgg ttatgaacac aattaacaaa aaataaacac        60
     cacaatggag ccgggcactc ctaagaaacc cgaaacgctg gagaaggtgg gtgctgcaac       120
     agcgacagga tctgcgagca ttggctccgc ctgtgctggc accagctcgg gggctatccc       180
     gaaagggccc catcccaaat tgggggtgaa aggtggaaga cagtcggccg ccagcacctc       240
     tgcaaagtgc gcgtcggcgc caaaaactgc agaaggtgcg gctaagaccg ctcaccgacc       300
     gagcaaagca attttacata tgcggagaag cggactgccg cgcagacact ccgatcacat       360
     aacaggagca agatcgccaa cccctcagcc gaatggttga agaaggtgga gtgggcgaga       420
     aaggtgctcc caaattatgg ccaagagagg cctagtcagg ggagcgagga gagatctctt       480
     attgcmtgga cctgmggcaa agagatcgaa ggtccaacca aacctgtctt ttgcggacat       540
     cacgcgggac aggattttga ttgggctggt ggacgaggga aatcccggag gccggatccc       600
     caaaaatcaa tggaaggcag tcgaggagaa gctggccatc ttgtgcatgg cactgctccg       660
     agacttcccc cagccaacac catgctgcaa ggacgcgggg tggtttcaag gcagcgtcaa       720
     ggtggtggcc tgcgatagtc agcggtcatc atgttgcaga ggtgcagtcc caaacctccc       780
     cacgcacgac tggaaggtcg taaaggtgga gcagcatgag gggccggtga gtcaggccat       840
     cgtcgtgcta aacaaggaat cagtttcccc aatagaggct gctcacgggg aactgaattt       900
     cggtttcagc gcgatcagag tgaaggtcta caagggagac tcgagcgcga aggaggaccc       960
     ggtcggccgc gtgaaccgga gacgacgacc tcccagtgac gatgaggagc cgacgtcacg      1020
     gtggtggagg gaaacgttgc agatgtcatt aagactactg caagtgaacc tccaccacag      1080
     taaggcagcg tctgctgctc tgctgctccg cctggctgac ggtggggcag acctagtgct      1140
     ggtacaggaa ccttgggtcg ttggaggcaa ggtctctgga ctaggcacca aggaattcaa      1200
     gttgctactt gaccctaaag gaggtaaaat tcgaacctgc attttagcca aaaggcacct      1260
     tagcatattt ctgcttcata attacagcaa cggagacaac accgtagcaa gcctggaact      1320
     tccagcggct accataaggg tgacttcaac gtacatggcc ttcgaaaagg agggmccccc      1380
     agacgagcta gtccgamaac tggtcgaaga gagcgaggcg ctcaacatcg gcctggtaat      1440
     cggctgcgac gcaaatgctc accacactca gtggggaagc ccatcaagca ataacagggg      1500
     tgagtctctt tttaatttca tccttggctc aacctattcc tatgcaacag gggtaacacc      1560
     cccaccttca tcacaaaaaa tagccaaacg gtcattgacc tcaccttggt gtcaggcagt      1620
     ctgcttgaaa aagtcagaaa ttgggaagtc tcaagcgagc actccttttc agaccacaga      1680
     ttcatagaaa ctacwttatc attagaccct cccactccag ctgaattcgt caaccttaga      1740
     cgaataaact ggcgcgctta tagagaagcc ttactaggta ttcttccaat agaaccccca      1800
     aatgacaata gtgatctacc cagtctagat aactcagtag ggaccttcac agaagcctgc      1860
     aatatggcct ctcgaatcaa cctaccctaa atgcaagccg aggggatcca aaaagcctcc      1920
     ttggtggacc cagaaacttt cagaactcag atccagctgc agaacccttt ttaacagggc      1980
     gaaagcgggg aatgaagatc taaaatggca acaatataag ttggaactag cctcctacaa      2040
     gaaggccata agaaaaggaa aacgatcagc ttggcagacc ttctgctcaa acatagagga      2100
     aatcaaccga tgcagctcgg cttaggaaga tcctctccaa aacaacccct tccttgggat      2160
     accttaaaaa accagatggc tcatggtcag actctagtga ggagacccta agcctacttc      2220
     tagactccca ctttccgggt agtctcccgg tagaacgact tccagaaaat cagtctggtt      2280
     caagcatcga cctggaaacg cttctgtctg aacgtaacat aagatgggcc ataaacagtt      2340
     tcaaaccctt caaatcagca ggacctgatc atctctcccc tgcgcacatc caaaatgctg      2400
     gtcaacttgc cgtcaactgg ctaaagaaaa ttttccgcac catacttaag ataggaacat      2460
     tgccatcaac atggagggaa acaaaggtag tctttatacc caaagcgggc aaagcctcgc      2520
     acacgacgac gaaagatttc aggcctataa gtctgacatc ctttctactt aagagttttg      2580
     aacgactgat tggactgcac atcaggtcag tcatggactc aaaacaatta tcagcagcac      2640
     aacatgctta ctcaaagggc aagtccaccg aatcagctct acacgcggta gtcagccaaa      2700
     tcgaaaagtc actcaaccac aaggaatacg cactagttgc attcctggac atagagggcg      2760
     ctttcaacaa tgttctccct gcagccataa ccgaacccct caccgacctg ggtgttgagt      2820
     ttcaagtcgt ggagctaatc cataaattgc tgatgagcag aatggtaacc tccaccctwg      2880
     gaacctcaac acaaacaagg ttcgtgaaca ggggaacccc tcagggtggt gtactctccc      2940
     ctctactatg gaacatcgca gtaaataagc tgctgtgtaa catggaaggg ggtggatgta      3000
     aggttgtggc atatgcggac gacgtagcca ttattttctc agggaaattc cctcagacac      3060
     tatgcgatct aatgaccgcc aaacttaaaa tactatctga ctggacaaca gaaagaggtc      3120
     taggggtaaa cccctcgaaa acggagctgg tgctgttcac aaacagatac aaggttcctc      3180
     aactaaaccc accaacatta aataactgtc tctctctctt tcaatgataa cgctagatac      3240
     ttggggttag tactagataa gcgtctgaca tggagactga acagccaaga gaacgagaaa      3300
     ggcaacaatt gccctctatt cctgcaaaaa agccatcgga acgaaatggg gcatgtcccc      3360
     gaaatcgtca actggataca cacagcgata gtcaagccta ttctactcta cggagtgtca      3420
     atatggtggc ctgcgctaat gaaacagaca accacagcaa accttaacaa ggttcaacga      3480
     atggcatcct tatgcataag cggagccctt cgcaccaccc ccaacgaggc gctaaatgct      3540
     attctgaacc ttcccagcct ggacttagcc ggcatggagc gggccaagat agctgcggtt      3600
     cgaatgaggg acttagggca atggtcatgc caggatactc cagcaagaca caacgatccc      3660
     acctaaaacg gatctatgcg aaccaattga atacagccac accccctttg aagcattgct      3720
     cccaaccaga gaagactggg agcaaggtct accgggccta aatagaggca gtcaatttct      3780
     acactgacgg ctccaaatta aataatcaag tcggaggagg aatatactcc gaccaactta      3840
     acatcaggaa atccttcaga cttccggatc actgcagtgt cttccaagcg gaagtatatg      3900
     ctataaatga agctttgttg ctcctaaacg atgcaaactg tcaaaagaaa tgggtaaaca      3960
     tctacagtga tagtcaagcg gctatcaggt cgattatctc gaccaataca aactctcaaa      4020
     ctatatcaaa ctgccgcaaa tctctacatg agatggcttt gcagtttaaa gtatacctaa      4080
     tatgggtccc gggtcaccga aacattgcag gcaattgtat tgcagatgag ttggccaggc      4140
     atggcactac cgttcctctc cttccggaca aggagaacat tggtatgccg atggccacct      4200
     gcaagctgaa cattaaaaac aaatataaag aacttgcgag cctagcatgg acacatgtaa      4260
     gacattgtcg catctctcgc cagacatggc caattattga tgcgaagaga acttctgaac      4320
     ttctaaagct aaaccgtacc gagtgcggaa tgctaatacg agtgcttaca ggccattggt      4380
     tggtcggcac acatgcaagc agactgggcg cgccccaaaa cgatttctgc agaagctgca      4440
     gggacgagga ggaggaggaa acggtggaac acctgttctg ttcctgcccg gccctatgca      4500
     gatctagact gtaccactta gggaatccct tcatgagcag tctatctgaa ctggcgaata      4560
     taagcctaaa gcgaataata aaattcatga aagcaaccgg atgggagcta tgctaggtca      4620
     gctgcggtaa gagcagcaga caataatata ggaaagggga cacagatcca cgcggtatca      4680
     caatggacct tctaggtcta agtgtgtcaa taatttgaca gctgctctaa cctaacctaa      4740
     cctaa                                                                  4745
//
ID   Loa-2_BTa   repbase;    DNA;    INV; 4182 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4182
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 715-715 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           431..3796
FT                 /product="Loa-2_BTa_1p"
FT                 /translation="MTWTREMNIDVMRCFYRATRLDTNASGYRFHLRQLFL
FT                 AAYPDLTNVTEQRLVDQKRVIINNKKLTVQEIEEIKREVAHELHIASTPTE
FT                 ADIIFTPSSVDEFSRHARDGVVSPRAYPIHRFVDSADSVPSFEDTMELETR
FT                 EKIRFFRDKWRGSNPNLRPAIPKLWMNRMCKDRIKIINNKIINELISEEAD
FT                 LEEIHLVVYACACTVTVLNGQKLRSQGEQCPKRRRKPAWQLRLEKKIERLR
FT                 KEIGRTTQYLRGVRTKKLEKEISLIIRDKSKTVAETQEISKMKLAVYAARL
FT                 RRYNESNDRKNQNALFNRNEKAFYRNLTSKEIPVTPPKKEEVTAFWKNLWS
FT                 NPVQHREGGEWIEKEIARQEAVPEQTNHVITVNELAETIRGTHNWKCPGAD
FT                 NVQNFWYKNFPVLHAHLTQQANRIVQHPELAPEFLTEGRTFIKPKDEDTKN
FT                 PANYRPITCLPTIYKIITATLCRKIDRHLISNDVLTEEQKGCRKQSKGCKE
FT                 QLIMDSVILKQTEKNRRNLNTTFIDYRKAFDMVPHSWLLRVLEIYKIHPVL
FT                 RHFLASVMKNWKTKISLKTEDGQLETEFIYIKRGIFQGDALSALWFCLSLN
FT                 PLSNALKDTELGFHIKERRQTLYILSHLMFIDDIKIYSSSPGELKILLGVV
FT                 ESVSADICMEFGLEKCRVLNIYRGKVAEEEEDQTLYGTIVEQMDENDSYKY
FT                 LGFQQNRRLNHSDIKHMVQQHYEQRLRVLLRSRLNSRNLFKAINTFAVPVL
FT                 TYSFGIIKWTTTDLENINIKTRVLLTKSRKLHPKSCKERVTLGREVGGRGL
FT                 LDIHELCNRQVHDLRTYFTNREHPLHQAIVCTDRNFTPLNLASQGAAYPPF
FT                 HTDEQKETIWASKELHGRHYSQIHQDHISKSLSYKFLQSGQLFPETEGFIL
FT                 AIQDQVICTRNYRKFVIKDGTVDDSCRKCHLCPETIDHITAGCRLLAGTEY
FT                 TRRHNSVAKIIHQGLSLHRNLLDSVPPYYEYNPESVLENDAYKLYWDFTIY
FT                 TDKTIPHNRPDMVLLDKNQGIAHLMDISVPADANVDAKYRDKIEKYLPLAT
FT                 EIQRLWKLKEVIIVPFIISVTGITPHSFLRHLKQLHLGENVHTQSQKAVIL
FT                 HTCNITRSFLSSGQ"
XX
SQ   Sequence 4182 BP; 1297 A; 885 C; 925 G; 1075 T; 0 other;
     ccgcaggggc aacacattgt gttgcacggg aggccccttt gggctggcga ccccgaggta        60
     cccgagcaag cggatgggaa caatctggtc ggccaaatcc aaacccgtgg catcccagga       120
     agtaggtttg gactcgtccc aagctaaggt tctcagccgc gaaccccctg tcatagggtt       180
     tgcagcccta tgacaggtta tcgagtgtct tgcagtaaat catcaagaag aagcctcggt       240
     tgcgtcaact tgtgaggtag ttgacgtatc agttcatcct cacaacgctg gagctgagga       300
     cggccgtgga tcagcccagc gtctaacggt acgacggcca accccgagca gatccccttc       360
     acctcctgcc tccggtgttt taccggcaag tcagccggca accaccaagg caggaattcc       420
     gaggcagcgc atgacttgga ccagagaaat gaacatcgat gtcatgcgtt gcttctatag       480
     agcaacacga ctagacacca acgcatcagg gtacagattc cacctacgcc aattgttcct       540
     ggcagcgtac cctgatctaa ctaatgtcac tgaacagagg ctagtggatc agaaacgggt       600
     aatcatcaac aacaagaaat taactgtgca ggagatcgag gaaataaaga gagaagttgc       660
     tcatgagtta catattgcat ctactcctac agaggcggac attatcttca cgccatcatc       720
     agtcgatgaa ttctctcgtc atgctaggga tggggtggtg tcccctagag cgtatccaat       780
     tcataggttt gtcgattcag cggatagtgt accaagtttt gaagacacga tggaactgga       840
     aactcgtgag aagattagat tcttcagaga caaatggaga gggagtaatc caaatctaag       900
     gccagcaatt ccaaaacttt ggatgaatag gatgtgcaaa gaccgcataa agattattaa       960
     taataagatc attaatgaac tcatctcaga ggaggcggat ctcgaagaaa tccacttagt      1020
     cgtctacgct tgtgcctgca ctgtcacagt tttaaatggc cagaagttaa ggtcgcaggg      1080
     tgagcaatgt ccaaaaagaa ggaggaaacc tgcctggcaa ctgagactcg agaaaaagat      1140
     cgagagattg cggaaggaaa ttggtcgaac cactcagtat ttaagaggtg tcagaactaa      1200
     gaaattggag aaagagatta gtcttatcat cagggacaaa agtaagaccg tcgcggaaac      1260
     ccaagagatt tcgaagatga aactcgctgt ttacgcagct cgccttcgaa ggtataacga      1320
     gtccaatgat agaaaaaacc agaatgccct cttcaataga aatgaaaagg ccttctacag      1380
     gaatctgacc tcgaaggaga taccagttac accacctaag aaagaagaag tgaccgcttt      1440
     ctggaaaaat ctctggtcta atcctgtgca gcatcgggag ggtggtgaat ggattgaaaa      1500
     agaaattgcc cggcaggaag ccgtgccaga gcagacaaac catgttatca ctgtaaatga      1560
     gcttgcggag actatcaggg gcacccataa ctggaaatgt ccaggtgccg acaatgtaca      1620
     aaacttttgg tataagaact tccctgtatt gcatgcacac ctaacacagc aagccaacag      1680
     aatcgttcag catcccgaat tggcacccga gtttttaaca gaaggaagga cgttcattaa      1740
     accaaaagat gaagacacaa agaaccctgc gaactatcgt cccatcactt gtctgcccac      1800
     catctataag ataatcacag cgaccctctg taggaaaatt gatcggcact tgatatcgaa      1860
     tgatgtccta acggaggagc agaaggggtg ccgaaaacag agcaaaggtt gcaaggagca      1920
     gttaataatg gatagtgtta ttctgaagca aacggaaaag aaccgcagaa atttgaacac      1980
     cacattcatc gactatcgta aggcgtttga catggtgcct cattcttggt tattaagagt      2040
     cctcgaaatc tacaagatac accctgtgtt gagacacttc ctggcatccg taatgaaaaa      2100
     ttggaaaacg aaaatctccc tcaaaacgga ggacggccaa ttggaaactg aatttattta      2160
     cattaaacgt ggaattttcc agggagatgc gctcagtgca ttgtggtttt gtttatccct      2220
     gaatcccctg tcgaatgctt tgaaagacac tgaacttggg tttcacatta aagagcgcag      2280
     acaaactctg tatattctca gtcatctgat gttcatagat gatattaaaa tctactcctc      2340
     atcgccgggt gagcttaaga tcttgctggg tgttgtggag tccgtatccg ctgatatttg      2400
     tatggagttc gggttggaga agtgcagagt tctgaatata tatcgcggaa aggtggcgga      2460
     agaggaggaa gatcagactc tctatggtac aattgtcgaa caaatggatg aaaatgattc      2520
     ctacaaatac ctaggattcc aacagaatcg cagactaaac catagtgaca ttaagcatat      2580
     ggttcaacag cattatgagc agcgtctcag ggtcttgtta cgctctagac tgaactcaag      2640
     aaatctgttt aaggctatta atacttttgc tgtgccagtc ttgacatact ctttcggaat      2700
     tatcaaatgg accaccactg atctggagaa tatcaacatt aaaaccagag tgttgttgac      2760
     taagagccgg aagttacacc cgaaatcctg taaagagaga gtgactctcg gtcgggaagt      2820
     aggcggaaga ggtctactgg atatccacga gttgtgcaat cgtcaggttc atgatctcag      2880
     gacgtatttt acaaacagag aacacccttt acatcaggca atcgtttgca cggataggaa      2940
     ctttacacct ttgaatttgg cctcgcaggg agctgcgtat ccaccgtttc acacggatga      3000
     gcagaaggag accatctggg catctaaaga gttgcacgga agacactata gtcagatcca      3060
     ccaagatcat atctccaaga gcctgtctta caaatttctt cagagcgggc agttgtttcc      3120
     ggaaacggaa ggctttatac tcgccatcca ggatcaagtc atttgtacaa gaaactatag      3180
     gaaattcgtc attaaagatg ggaccgttga tgactcatgc aggaagtgtc atttatgtcc      3240
     tgaaacgatt gatcacatca cagcaggttg cagactccta gctggtaccg aatacaccag      3300
     gagacataac tcagtagcca aaataatcca ccaagggctt tcattacatc gtaacctgtt      3360
     ggacagtgtg cctccgtatt atgaatataa tcctgagtca gtgctggaaa atgatgccta      3420
     taaattatat tgggacttta ccatctatac cgacaagacc atcccgcaca ataggccaga      3480
     tatggtcctt ctagataaaa atcagggcat tgctcaccta atggatatct cagtccctgc      3540
     tgatgccaat gtagatgcta agtatagaga taagatcgaa aagtatctgc ccttagcaac      3600
     tgaaatacag cgactgtgga agcttaaaga agtaattatt gtaccattta taatatccgt      3660
     cacggggatc actcctcatt ctttcctgag acatctgaag cagctccact taggtgaaaa      3720
     cgttcacacc caaagccaga aagctgttat cctgcacacc tgtaatatca ctagatcttt      3780
     cctaagctca gggcagtgac tgtattttta tttttaatta tgtgaccgac tgctaaccta      3840
     tggtttatgc tcttttattt taacaatttt tttttaaatt tttaacaacg ttttacgatt      3900
     ttaacaactt ttttcgattt taacaccttt ttacgatttt aacattcaaa ttttagaatt      3960
     ttaagtcaaa ttttagcaat tttaagtcaa attttagtaa ttttaaatca aattttagca      4020
     gttttaaatc aaattttagc gtttttaaat caaattttag caattttaaa aggctctagc      4080
     tttgaaagac ttggctacgg tccgtctttc aatgagtttc tttccacaaa cgtatttttg      4140
     tgagaaaagt acttctgtaa ataataataa taataataat aa                         4182
//
ID   LOA-2_CQ    repbase;    DNA;    INV; 4909 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4909
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 149-149 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           488..1144
FT                 /product="LOA-2_CQ_1p"
FT                 /translation="METDQNQNPSASCFPQLEPTRKEGRRSMKSAGREDTT
FT                 RREESAENCRVQFAVSERMRDMHRKVHMWKEVGELSSTKREPSVVLRSNSA
FT                 RDGKVTQQSLTKTRQPHAYFRFFANIAPVQLNILKIHATTSPLEHPRYDEH
FT                 GILPLVNTASQKTLRYRYTIQNRPHVAFQYFMYYTRGTRILNTHQRPSCRT
FT                 LPSCSRIIKTSWRKRQVQLNNEQYPLHPG"
FT   CDS           1119..4805
FT                 /product="LOA-2_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MNNIRCIQVNLHHAKGASSILSRRFTKEQLGIALVQE
FT                 PWVNHNKILGLSCQSSRLIYSNTQATPRTAILLSGNIKCTPITEFVQRDIV
FT                 AAMVTVPTTKGKQEMVVASAYFPGDQDDVPPPEVAALVRYCRAVNKPFLIG
FT                 CDANAHHTIWGSTDVNDRGERLLEYLTSNNVNVCNKGNEPTFVTVARQEVL
FT                 DLTLCSAAFADKIKNWHVSEEASLSDHRQIVFDIEASQLKRETFRDPNDTD
FT                 WNAFRGHLCRSKQDAPSRIRTPEELDTAANTLQRRITAAYQASCPKKVREI
FT                 CRDVPWWSESLSSLRKEARRLFNRAKLTSEWDAYKAALTKYNAELRRAKKT
FT                 SLANFCEDISSMSEATRLQKALSKDHSNGLGQVRDEQGTLTVTNKETLQVL
FT                 MSTHFPESTEREEDAASTRTADGVWCRPSRESVHLARRMFNQSSIRWALGT
FT                 FEPLKAAGPDGILPIFLQKAADTIMAELINLLRASFTLGYIPRSWRKVKVI
FT                 FIPKAGRSDPTMPKAFRPISLTVTLLKLMEKITDNHIRAEFLKDFPLHKHQ
FT                 YAYQAGKSTETALHALVSRIENALKYKESALCAFLDIQGAFDNTSYTAINE
FT                 ALRSRNVDGTTASWIHAMLTSREISASLGDTSITITAAKGCPQGGVLSPLL
FT                 WLLVVDSLLRKLTLLGYEVIGYADDVVLIIRGKYDGTLSDRLQSALNCTMS
FT                 WCEQEGLTINPNKTVIIPFTNRRKHDLRPPTLKGTQLTFSSEVKYLGVILD
FT                 KKLNWNAHLDYAVKKATTAIWACNKMLGKTWGLKPKLAFWSYTTIARPRVT
FT                 YASTVWWPKTEQKTCQSKLTKLQRLACLSVTSAMKTTPTAAMEAMLCILPL
FT                 HLHVKQEAALGALRLQRCNNWVEGDGTGHSRIVKAFDISPLATSVSDCMEV
FT                 RPNMDIPYEVIETNRQMWSNGGPTLPEGTIRFFTDGSKMGTSTGAGVFGPR
FT                 TRETISMGKWPTVFQAEVYAIHICARTCIMRNYRHAKIGIFSDSQAALLAL
FT                 KSSKCESKLVWECVASLRELASRHNRVMLFWVPGHCGIEGNEMADELARQG
FT                 SSNIFVGPEPFLGISKSAVKQEITNWGQLQIASIWGEMRGLRQAKTFITPS
FT                 PSIARKLLGLNRRELRILAGLLTGHCPARYHLHKIGRWPNNLCRFCLTELE
FT                 SSAHLLCFCGALVSRRLRFFGSHLLTPYDVWHHTHPKKVIQFIDCIAPNWD
FT                 KPCLQNNPSSSDPMDTSNL"
XX
SQ   Sequence 4909 BP; 1423 A; 1222 C; 1166 G; 1096 T; 2 other;
     ccgcgtggga gtcgctcaat ctgcattcct gtcacacatg aggtctgcac agctgattcc        60
     acgtagattt ttcccgccag taatgacagg aaacgctgac aaacggaata tgtgccaaaa       120
     tcataagtgg tttttttaac atataaaggg aaatcatcgt gaactggaac tgccggtcgt       180
     tagcccgggt aaagtggaaa cgttgagatg attgttgtcc tctgctctca tctcgcaaaa       240
     agccatacag agaaccacgt cccattcccc atccccaatc cctttcccaa atcccaatcc       300
     ccaatctaca gtgtcaagcg acccgtgcca agggatgtat gtctggaggg gagcaagaag       360
     twtccaggtc tkaacggagc ctgcgtggta ccaagacgcc ccacgcagta tgtagtctcc       420
     tctgtgtctt tgcaggcccg agtcacagtt gaagtttgta ggagtcctga aaacaaggtt       480
     tatcaacatg gaaactgatc aaaaccaaaa cccaagtgcc agctgcttcc ctcagctgga       540
     accaacgcgg aaggaaggaa gaagaagcat gaaatccgcc ggaagagagg acaccactag       600
     aagagaagag tcggcggaaa actgtagagt gcagtttgcg gtgtcggaac gcatgagaga       660
     catgcacagg aaggttcaca tgtggaagga agtaggagag ttatccagta ccaaacgaga       720
     accttctgtt gttcttcgga gcaattctgc gagagatggt aaggttacgc aacagtcttt       780
     gacgaaaact aggcaaccac atgcatattt tcgctttttt gcgaatatag caccggtaca       840
     gctgaacatt ctgaaaattc acgcaacaac ctcaccgctt gagcaccccc gctacgatga       900
     gcacggtatt ttaccactcg tcaacacagc atctcagaaa actctcaggt acagatatac       960
     aatccaaaac cgacctcatg tggccttcca gtacttcatg tactatacaa gaggaacccg      1020
     catcctcaac acacatcagc gaccaagctg caggacactg ccatcctgtt cccggatcat      1080
     caaaacatct tggagaaaac ggcaggttca actgaacaat gaacaatatc cgttgcatcc      1140
     aggttaacct ccatcatgct aagggtgctt ccagtatcct tagtcggagg ttcactaaag      1200
     agcaattggg gattgctctc gttcaagaac cgtgggtgaa ccacaacaaa atccttggac      1260
     tgtcctgtca aagcagtaga ttgatctaca gcaatacgca ggcaacacca agaacggcga      1320
     ttctgctgag cggaaacatc aagtgtactc caatcacgga attcgtccaa cgagacatcg      1380
     ttgcagcaat ggtgaccgtc ccgaccacca agggaaagca ggagatggtt gttgcatctg      1440
     cttactttcc tggtgaccag gacgatgttc caccgccaga agtggccgca cttgtgcgat      1500
     actgtagggc tgtcaataaa ccgttcctca tcggttgtga cgcgaacgcc caccatacga      1560
     tatggggaag cacggatgtt aacgatagag gtgagcgcct tcttgaatac ttgacgtcta      1620
     acaacgtcaa tgtatgcaat aagggcaatg aacctacttt tgttactgtc gcaagacagg      1680
     aggtcttgga cctcactctg tgtagtgctg cttttgcaga caaaataaaa aactggcatg      1740
     tctctgaaga agctagtcta tctgatcaca gacagattgt ctttgacatt gaagccagtc      1800
     aactgaaaag ggaaacgttt cgtgacccaa atgacacgga ctggaacgcc tttcgaggtc      1860
     acctttgccg gtccaaacaa gacgctcctt cacgaatacg aacccccgaa gaattggata      1920
     ctgcagcgaa tactcttcaa cgcaggatca cggcagccta ccaggcaagc tgccctaaga      1980
     aggtgaggga aatctgtcgg gacgtaccgt ggtggagcga aagcctgagc agtctccgca      2040
     aggaggctag aaggcttttc aacagagcta agctcacttc cgaatgggat gcctacaaag      2100
     cagccctaac gaagtataac gcggagttga ggagagccaa aaaaactagc ctggctaatt      2160
     tctgtgagga cataagctcg atgtctgaag caacccgact ccaaaaggcg ttgtcaaaag      2220
     accattccaa cggtctagga caggtgagag acgagcaagg cactctcact gtcacaaaca      2280
     aggaaacact gcaagtactc atgagtacgc actttccaga atcaactgaa agagaggagg      2340
     atgcagctag tacccggact gcagatggcg tatggtgtcg accatcaaga gagtcagtcc      2400
     acctagcccg tcgaatgttc aaccagtctt caatcagatg ggccctcggc acatttgaac      2460
     cactgaaggc tgcaggaccc gacggcatcc ttccaatctt tctccaaaaa gcagccgaca      2520
     ccataatggc tgagttgatc aacttacttc gagccagctt caccctgggc tacatccctc      2580
     gaagctggcg caaagttaag gtgatcttca tacctaaggc cggcagaagt gaccccacga      2640
     tgccaaaagc cttcagaccc ataagtctga cagtgacgct gctcaagctt atggagaaaa      2700
     tcacggataa ccacatccgg gcggagttct tgaaggactt ccctttgcat aaacaccaat      2760
     atgcatacca agcgggcaaa tcgaccgaaa ctgccctaca cgcgttagtg tcacgtatcg      2820
     agaacgcact gaaatataaa gaatctgcac tttgtgcttt tcttgatatt cagggtgcct      2880
     tcgataacac ttcgtacaca gccatcaatg aagcgctccg gtcgaggaac gtcgatggaa      2940
     caactgcgag ctggattcat gctatgctta cgagcagaga gatttcagca tcgctaggag      3000
     acacatctat cacaataaca gcagccaaag gctgtccgca agggggagta ctctctcctt      3060
     tgctttggct gctggtggta gatagtcttc taagaaaact tacactactc ggctacgaag      3120
     tcattggata tgctgacgac gtagtcttaa tcatccgggg gaagtacgac ggaacgttat      3180
     cggaccgtct acagtcagct ctaaactgca ccatgtcgtg gtgtgagcag gaagggctga      3240
     caataaaccc caacaaaacc gtgataatcc cgtttactaa caggaggaaa cacgacctta      3300
     ggccgcctac cttgaaagga acccaactga ccttcagttc tgaggtcaaa tatttaggag      3360
     taatccttga caaaaagctg aactggaatg cacatctgga ctatgcggta aagaaggcaa      3420
     ctactgctat ctgggcgtgc aacaaaatgc tcggcaaaac ctggggcctt aaaccgaaac      3480
     ttgcattctg gtcttacacc accatcgctc gacctagggt aacctatgcg tcgaccgttt      3540
     ggtggccgaa gactgaacag aagacatgtc agtcgaagct gaccaagctc caacgactgg      3600
     catgtctctc tgtaacgagt gcaatgaaaa caacccccac cgcggccatg gaagccatgc      3660
     tatgcattct gcctttacat ttacatgtga agcaggaggc agcgcttggc gctctacgac      3720
     tacaacggtg taacaactgg gtggaaggag atggaacggg tcactcgcgg atcgtgaagg      3780
     cttttgacat ttcccccctt gcaacttcag tctcggactg catggaggtg aggcccaaca      3840
     tggacattcc atatgaggtg attgaaacaa atcgccaaat gtggagtaat ggaggaccta      3900
     cacttccaga aggaactatt cgtttcttta cggatggttc aaaaatgggc acttctactg      3960
     gagctggagt cttcggtcct cgaaccaggg aaaccatatc tatgggaaag tggcctaccg      4020
     tttttcaagc agaagtgtat gccatacaca tctgtgcgag gacgtgtatt atgagaaatt      4080
     atagacacgc aaaaatcggt attttctcgg atagccaagc tgcactattg gcattaaaat      4140
     cctctaaatg cgaatccaaa cttgtttggg agtgcgtcgc ttccctcagg gaacttgctt      4200
     ctcggcataa cagagtcatg ttgttttggg tcccagggca ctgcggcatt gaaggcaacg      4260
     aaatggctga tgaacttgct agacaaggct catcaaacat cttcgtgggt cccgagccgt      4320
     tccttggaat ctcaaaaagt gccgtgaagc aagaaataac taattgggga caattgcaaa      4380
     tcgcttcaat ctggggcgag atgcgaggat tgagacaagc taaaactttt atcactccaa      4440
     gtccttcaat tgccaggaaa cttcttggct taaaccgtag ggaactacga atactcgcag      4500
     ggcttctaac aggacattgt cctgccagat atcacctgca caaaatcggc aggtggccta      4560
     acaacctctg tcgtttttgt ttaactgagc tggaaagctc ggcacattta ctctgcttct      4620
     gcggagcact tgtgtctcga aggctgcggt tctttggatc gcaccttctt acgccgtacg      4680
     atgtatggca ccacacccat cccaagaagg tcatacagtt catcgactgt attgcgccga      4740
     attgggataa accatgtctg caaaataacc cctcgtcttc cgatccaatg gatacgagta      4800
     atttgtagta tggacagtaa ccagggtaca tcacaaaaga tagccttctc aggtggtcgc      4860
     agtgaactta acccaatgcc cattgggcaa caaaaaaaaa aaaaaaaaa                  4909
//
ID   LOA-2_DAzt  repbase;    DNA;    INV; 5521 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5521
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 878-878 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           484..1827
FT                 /product="LOA-2_DAzt_1p"
FT                 /note="DUF4780."
FT                 /translation="MHKITNTKTKTNKKNQQEPDTPQTSNGSNPPHGKAAA
FT                 QRPGLTSSKAGQTCKAESAGVNPSGSHPEHGVGGGTSPNTDTSERRLSNTA
FT                 AAQPSGKVEGDDLPSTSAQAKKHTYAERRSAGHILRRQNASKEASPSADWL
FT                 KKVEWATTVLPHFTMVSQPKRQRSQETPGPAAKRSRVAPNISFAQIAKERT
FT                 LIGVLDKGSAEGKIPRSQWKWVEAALADRCFELLETDPGPPPVCKDMGWFQ
FT                 GSIKVIACDDERSVKLYKAAVAQIGEVYAGAKLVAVDWSEVPSRPRARIWV
FT                 PATIKEPERILKMLQRCNPAMPTQDWRVVKVEETKGPTNQAIIILNKESLA
FT                 PIEAAKGELNFGFSSVAVKVYKSDAASAEARPVDNPVAQDVASEIEAPDNE
FT                 LEPTKEGYSSDAELMRDFEAMCRDEVSDDSDADTTVVEILEDVSEAPANKS
FT                 PSL"
FT   CDS           1757..5389
FT                 /product="LOA-2_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MPTLQWWRFSRMSLRLLQINLHHCKAASAALILRLDA
FT                 SGADVVLIQEPWIVGAKVCGLATREYKLIVPQTVGKTRTCILARKHLNIFL
FT                 LHNYSNGDNTAVSLELKRTHLRLMSSYMAHEESDPPNDLVCKLASNSERSN
FT                 ISLLIGCDANAHHTQWGSTDTNVRGESLFNFILNSNLTICNRGNEPTFIIK
FT                 NRQEVIDLTLVSQNLLDKVKGWRVLEDHSFSDHRYIETILSLESPKPTDYI
FT                 NPRKTDWVKYSSVLEDLLPNKAPISPNTKDELDRTVNRFTEACNKAFTAAC
FT                 LPHKKRGKQKPPWWSKQIDILRKSCRTLFNRAKSANEEKYWVDYKVSLAQY
FT                 KKETRRAKRASWQKFCSVIEETSEAARLRKLLSKTTPSVGYLKRNNGTWTN
FT                 SSEESLHVLLETHFPGCTTIDPAAHIRRGGQIASMDHILTKRNISWAVNSF
FT                 NPFKSPGPDNVIPAQLQKAGDSAINWLQNIFRKILAVGTIPQEWLKARIVF
FT                 IPKAGKPSHSTPKDYRPISLSSFLLKTFERLVGLHLRTIISPQMLSGAQHA
FT                 YRKGRSTETALHEVVSYIEKSLHLKEYSLIAFLDIEGAFNNVVPGAITEAL
FT                 TDLGVDDHLVMLIDQLLTCRTVTSSMGSSTQSRYVNRGTPQGGVLSPLLWN
FT                 IAVNKILCDLEGGGGCKVVAYADDVAIGFSGKYPQTLCDLMSTKLAGLSEW
FT                 TKSRGLGVNPSKTELVLFTNKYKVPPLNPPLLNECRLSFSDSASYLGLVID
FT                 KKLNWNLNVKDRVKKATIALYSCKKAIGLNWGMNPNVVQWIYRAIVRPILL
FT                 YGVTVWWPALSKGSIARQLGKVQRTAALCISGALRTTPNDALNAILSLQSL
FT                 ELAGKERAEIAAIRLRDSGQWTSHLRGHASILNSRTAPTRTDYCVPREHTI
FT                 TPFSVIIPSRDEWLGEPPGQDLAISIFTDGSKLDNRVGGGIYSEQLEIRHS
FT                 FRLPDHCSVFQAEVIAIMEALKLLQTAAKASLSTTTVNIYSDSQAAIKSLH
FT                 AISSNSATVTNCRKSLHEMAQQFDISLIWVPGHRDIEGNCKADELARSGTT
FT                 IPLLQDKEDICMPMATCKLIIKEIYMRRADNAWRSAPLCRITRQTWPIIDR
FT                 KRTLELCKLGRKRCSVVIRSLTGHWLIGSHANRLGAPYNDFCRSCRDEEEE
FT                 ETVEHLFCSCPALSRRRLQYLGLPYVSDISEMSKICPRKIANFIRASGWDN
FT                 C"
XX
SQ   Sequence 5521 BP; 1579 A; 1458 C; 1425 G; 1059 T; 0 other;
     tctggtctaa tgagcgcgtg aggtggctca gagggggcct agctgaggcc accggacggg        60
     tcgcaggttg cggatagcga aaggcctacc tcctaaaaga ggtaggtcag ctgtgaataa       120
     tcgatcatct cagatgaccg gaaataagca gtcccggaca gccagcgggt gttcgcgaag       180
     cagcaacact gacgatgcgc ttgtggtgcc gcctcgaata agtagctcac acactcctac       240
     tccctacaca ttacccaccc acatcccatc ctccacactc acctcacacc gggccgggct       300
     aaggtgtcat tcgacccgtg ccgagagtca gcctggctgg gggcccggtt caaaaactag       360
     cccagtctcg aacggagagc tcagggactt ggcagccccc tgttctaatg atgccttacc       420
     cgggcaacgt ggatctctgc ccgggctgac cgttcccttt ctctgcatct cgtgggatgt       480
     aatatgcata aaataacaaa tacaaaaaca aaaaccaaca aaaaaaacca acaagagcct       540
     gacactcccc aaacgtcaaa cgggagcaat cccccgcatg ggaaggcagc ggcccaaagg       600
     cctggcctga ccagctcaaa agcaggacag acctgcaagg cggaaagcgc tggggtgaat       660
     cccagtgggt ctcatcccga acacggggtg gggggcggga catctcccaa cacggatacc       720
     tcggaaaggc ggctaagcaa cactgcggct gcccaaccat ctggtaaagt ggagggggat       780
     gatctgcctt caaccagtgc tcaggccaaa aagcacacct atgccgaaag gagaagtgca       840
     gggcacatac tccgtcggca aaatgccagt aaagaagcca gtccatcagc tgactggcta       900
     aagaaggtgg agtgggccac aacggtgctc ccacacttca ctatggtctc acaacccaag       960
     agacaacggt cgcaggaaac acccggtccg gccgcgaaaa ggtcgagggt ggcgccaaat      1020
     atctccttcg cgcagattgc taaggagagg acactgattg gtgtcctcga caaaggcagc      1080
     gcggagggca agatcccaag gagccaatgg aagtgggtgg aagcggcact ggccgaccgc      1140
     tgcttcgagt tgcttgagac ggacccaggg ccaccgccag tctgtaaaga catgggatgg      1200
     ttccagggga gcatcaaggt catagcctgc gacgacgagc gctccgtgaa gctgtacaag      1260
     gctgcggtag cgcagatcgg agaggtctac gctggggcga agttagtcgc tgtagattgg      1320
     agcgaggtgc ccagcagacc gagggcaaga atttgggtgc cggctaccat taaggagcct      1380
     gagcgcatcc taaaaatgct gcagagatgc aacccagcaa tgccaaccca agattggagg      1440
     gtggtcaagg ttgaggaaac gaaggggccg acgaaccagg ccatcatcat cctcaacaag      1500
     gagtcgctgg cccccataga ggcagcaaag ggagagctga atttcggctt cagctcggtc      1560
     gccgtaaagg tgtacaagtc ggacgctgcc tcggccgagg ctcgtcctgt cgacaaccca      1620
     gtcgcgcagg atgttgcctc ggagattgag gcacccgaca acgagctgga gccgactaaa      1680
     gaaggctact cctcagacgc agagctaatg cgtgacttcg aggcaatgtg tcgagacgaa      1740
     gtatccgacg actcagatgc cgacactaca gtggtggaga ttctcgagga tgtctctgag      1800
     gctcctgcaa ataaatctcc atcactgtaa agcagcatcc gctgccctca tactccgctt      1860
     ggatgcaagc ggagccgacg tcgtgctaat ccaggagcct tggatagtcg gagccaaggt      1920
     ctgtgggttg gcgacgagag agtacaagct cattgtaccc caaaccgtag gtaaaactcg      1980
     tacctgcatt cttgcaagaa agcaccttaa tatctttctg ctacacaact acagcaatgg      2040
     cgacaataca gcggtaagcc tagagctaaa gcggacacat ctgaggctga tgtcgtccta      2100
     catggcccat gaggaaagcg atcctcccaa cgaccttgtc tgtaagctgg ccagcaacag      2160
     tgaaaggtcc aacataagcc tactaatagg ctgcgacgcc aatgctcacc atactcaatg      2220
     ggggagcacg gacacaaatg taaggggtga gtcacttttt aactttatcc ttaactcgaa      2280
     cttaacaata tgtaacaggg gtaacgaacc cacttttatt ataaaaaacc gacaggaggt      2340
     tattgacctc acactagtat ctcagaatct gttagataag gtcaaaggat ggagagtcct      2400
     agaagaccat tccttctctg accacaggta catcgagacg attttatctc tcgagagccc      2460
     caaacccacc gactacatta acccaagaaa aaccgactgg gtgaaatata gctcggtatt      2520
     ggaggaccta ctccccaata aagcaccaat cagcccaaac actaaagacg agttagatcg      2580
     aacagtgaac aggttcacgg aagcatgcaa caaggccttc acggcggctt gcctgccaca      2640
     caagaaaagg ggtaaacaga aacccccctg gtggtcgaaa caaatcgaca tcctaagaaa      2700
     gagctgcagg actctcttta acagagccaa aagcgctaac gaggagaaat attgggtaga      2760
     ctacaaagtc agtcttgccc agtacaaaaa agaaacacga agagcaaaaa gggcctcttg      2820
     gcaaaaattc tgctcggtga tagaggagac gtcggaagcc gcaaggctac gcaagctcct      2880
     ctcaaaaacc accccctcgg tagggtacct taaaaggaat aacggtacgt ggaccaactc      2940
     cagcgaggag tcgctccacg tactgcttga gacccacttc cctgggtgta caaccatcga      3000
     cccggcggcg catatccgca ggggaggaca aatagcctcg atggaccaca tccttaccaa      3060
     acggaacata agctgggcgg taaacagctt taatccgttc aaatcgccag gtccggacaa      3120
     tgtcattccg gcccaattgc aaaaggccgg agactcggct ataaactggc tacaaaatat      3180
     cttcaggaag atactagcgg tggggaccat tccacaagaa tggctcaagg cgagaatagt      3240
     ctttatcccc aaagcgggaa agccctcgca ctcaactccg aaggactata gaccaatcag      3300
     cctatcgtcc tttctcctca aaacattcga gagactggtc ggactacatc tgagaacgat      3360
     tattagccct caaatgttgt caggagcaca acacgcctac cggaaaggaa gatccacgga      3420
     aacggcgctc catgaagtag tctcatatat agagaaatcc ctacacctta aggagtactc      3480
     tcttatagcc tttctcgata tcgagggagc ctttaacaac gtcgtcccag gagccattac      3540
     ggaagctctg actgacctgg gagtggacga tcacttggtg atgcttatcg atcaattgct      3600
     cacatgcagg acggtaacat catcgatggg ttcgtccact caatcaaggt atgtcaacag      3660
     aggcactccg caaggtggtg tcctgtcacc ccttttatgg aacatagcag tcaataagat      3720
     tctatgtgat ctggaggggg gggggggctg taaagtagtg gcatacgcgg atgacgttgc      3780
     aattggattc tcgggaaaat atcctcaaac actctgtgac ctaatgagca caaagctcgc      3840
     gggactgtca gaatggacaa aatcgcgagg actgggagta aatccctcaa aaacggagct      3900
     cgtgctattc acaaacaagt acaaggttcc gccccttaac cctcctttac taaatgaatg      3960
     taggctttcc ttcagcgaca gcgctagtta cctagggttg gtaattgaca agaagcttaa      4020
     ctggaacctg aacgtcaaag acagggtgaa aaaggctaca atagccctat actcttgcaa      4080
     aaaagctatt ggcctgaatt ggggcatgaa cccaaacgta gtccaatgga tatacagggc      4140
     aatagttaga ccaattctac tctacggagt cacagtttgg tggccggccc tatcaaaagg      4200
     atcgatagcc agacaacttg gtaaggttca gcgaaccgca gcattatgca tcagtggagc      4260
     actacgcacc accccgaacg acgcacttaa tgccatccta agtctccaga gcctcgagct      4320
     tgcggggaaa gagagggcag aaattgcagc gatacgtctg agagactccg gacaatggac      4380
     gtcacatctc aggggtcacg catcaatact taacagcaga accgccccta cgaggacgga      4440
     ctactgcgtc ccaagagaac acactatcac tcccttcagt gtgattatcc ctagcagaga      4500
     cgagtggctt ggggaaccac caggccagga cttggccata agcatcttca cagacggctc      4560
     gaagctggat aacagagttg gaggaggaat ctactccgaa cagctcgaaa ttaggcactc      4620
     cttcaggcta ccagatcatt gcagtgtgtt ccaagcggaa gtcattgcga tcatggaggc      4680
     gctgaagctc cttcaaacag ccgcaaaggc ttcattatca acaacaactg taaacattta      4740
     cagcgatagc caagctgcga tcaaatcact acacgcgatt tcttcgaact cggccacagt      4800
     gacaaattgc cgcaaatctc ttcacgagat ggctcaacaa tttgacatta gcctgatctg      4860
     ggttcctggt caccgggaca tcgaaggcaa ctgcaaggca gacgagctgg ccagatccgg      4920
     cactacaata ccccttctcc aagataagga ggatatttgc atgccaatgg ccacctgtaa      4980
     gcttattata aaagagatat acatgcgacg ggcagacaat gcgtggcgct cagcaccatt      5040
     atgtcgcatt acccggcaaa catggccgat cattgacagg aagcgcacac tagagctttg      5100
     taagctcggc aggaaaaggt gcagcgtagt catccgttcc ctcacggggc actggctaat      5160
     aggctcccac gctaatagac tgggagcccc atataatgat ttttgccgaa gctgtagaga      5220
     tgaggaggag gaggaaacgg tggaacacct gttctgctcc tgtccggctc tcagcaggag      5280
     aaggctacaa tacctgggct tgccctatgt ctcagacatt tcagaaatgt ccaaaatctg      5340
     tcccaggaaa attgcaaact tcataagagc atcaggctgg gacaactgct gacatgttcg      5400
     gttctcacga ggtggggaaa acaggggagc acctcctgcg gtatcacaac gggccgacac      5460
     tggtccaagt gcgacgggct cctgtggagc ctgacagccg ccttaaccta acctaaccta      5520
     a                                                                      5521
//
ID   Loa-2_DEl   repbase;    DNA;    INV; 3979 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3979
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 561-561 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3979 BP; 1146 A; 1033 C; 1026 G; 772 T; 2 other;
     acaggggcac cctatccggg cttgtcggag ccaaagggga gggcctaacg agcccccggg        60
     ccggactaag gtgtaaatcg gaccgtgccg agagtcagcc tggctgaggg cccgggttaa       120
     caactagctc agtctcaaac ggtgggttca gggagatggc gaccccctgt cctaactatc       180
     gccttacccg ggcatcgcgg atctctgccc gggtggacct tccctttctc cgcaactcgt       240
     gggattcaaa twatggacac aawtaaaaaa aaataaacac cacaatggag ccgggcactc       300
     ctaagaaacc cgaaacgctg gagaaggtgg gtgctgcaac agcgacagga tctgcgagcg       360
     ttggctccgc ctgtgctggc accagctcgg gggctatccc gaaagggccc catcccaaat       420
     tgggggtgaa aggtggaaga cagtcggccg ccagcacctc tgcaaagtgc gcgtcggcgc       480
     caaaaactgc agaaggtgcg gctaagactg tcgctccacc gaccgagcaa agcaatttta       540
     catatgcgga gaagcggact gccgcgcaga cactccgctc acaaacagga gcaagatcgc       600
     caacccctca gccgaatggt tgaagaaggt ggagtgggcg agaaaggtgc tcccaaatta       660
     tggccaagag aggcctagtg cagagaacgc acagccgaag aggcagcgat ctcttgaatt       720
     gcctggaccg gatcgaaggt ccaaccaaac ctgtcttttg cggacatcac gcgggacagg       780
     attttgattg ggctggtgga cgagggaaat cccggaggcc ggatccccaa aaatcaatgg       840
     aaggcagtcg aggagaagct ggccatcttg tgcatggcac tgctccgaga cttcccccag       900
     ccaacaccat gctgcaggac gcggggtggt ttcaaggcag cgtcaaggtg gtggcctgcg       960
     atagtcagcg gtcggctgac ctatacaaga aggcgacagc gcagctcggc gaggtgtaca      1020
     aaggggcgaa aatcgtcgcg ctggattggc gtgacgtccc cagtaggccc cgagcgagga      1080
     tctggctgcc gtcctccata aagacgccgg aagacatcct cttcatgttg cagaggtgca      1140
     acccaaacct ccccacgcac gactggaagg tcgtaaaggt ggagcagcat gaggggccgg      1200
     tgagtcaggc catcgtcgtg ctgaacaagg aatcagtttc cccaatagag gctgctcacg      1260
     gggaactgaa tttcggtttc agcgcgatca gagtgaaggt ctacaaggga gactcgagcg      1320
     cgaaggagga cccggtcggc aacccagccg agcaggtctt tccggaagaa cttgaggctc      1380
     ccggggacga agagccggag gacggctatt ccaccgacgc atcgttgagc agagtgatgc      1440
     aggcgatgaa gccggctgtt ggagacgacg acctcagtga cgatgaggaa gccgacgtca      1500
     cggtggtgga gggaaacgtt gcagatgtca ttaagactac tgcaagtgaa cctccaccac      1560
     agtaaggcag cgtctgctgc tctgctgctc cgcctggctg acggtggggc agacctagtg      1620
     ctggtacagg aaccttgggt cgttggaggc aaggtctctg gactaggcac caaggaattc      1680
     aagttgctac ttgaccctaa aggaggtaaa attcgaacct gcattttagc caaaaggcac      1740
     cttagcatat ttctgcttca taattacagc aacggagaca acaccgaagc ctggaacttc      1800
     cagcggctac cataagggtg acttcaacgt acatggcctt cgaaaaggag gaccccccag      1860
     gcgagctagt ccgacaactg gtcgaagaga gcgaggcgct caacatcggc ctggtaatcg      1920
     gctgcgacgc aaatgctcac cacactcagt ggggaagccc atcaagcaat aacaggggtg      1980
     agtctctttt taatttcatc cttggctcaa acctattcct atgcaacagg ggtaacaccc      2040
     ccaccttcat cacaaaaaat agccaaacgg tcattggcct caccttgaaa aagtcagaaa      2100
     ttgggaagtc tcaagcgagc actccttttc agaccacaga tttatacaaa ctactttatc      2160
     attagaccct ccaactccag ccgaattagt caaccttaga cgaataaact ggcgcgctta      2220
     tagagaagcc tttctaggta ttcttccaat agaaccccca aatgacaata gtgatctacc      2280
     cagtctagat aactcagaca ctatgcgatc taatgaccgc caaacttaaa atactatctg      2340
     actggacaac agaaagaggt ctaggggtaa gcccctcaaa aacggagctg gtgctgttca      2400
     caaacagata caaggttcct caactaaacc caccaacatt aaataactgc tctctctttc      2460
     aatgataacg ctagatactt ggggttagta ctagataagc caagagagaa cgagaaaggc      2520
     aacaattgcc ctctattcct gcaaaaaagc catcggaacg aaatggggca tgtccccaaa      2580
     aatcgtcaac tggatacaca cagcgatagt caagcctatt ctactctacg gagtgtcaat      2640
     atggtggcct gcgctaatga aacagacaac cacagcaaac cttaacaagg ttcaacgaat      2700
     ggcatcctta tgcataagcg gagcccttcg caccaccccc aacgaggcgc taaatgctat      2760
     tctgaacctt cccagcctgg acttagccgg catggagcgg gccaagatag ctgcggttcg      2820
     aatgagggac ttagggcaat ggaaacccca aacatatggt catgccagga tactccagca      2880
     agacacaacg atcccaccta aaacggatct atgcgaacca attgaataca gccacacccc      2940
     ctttgaagca ttgctcccaa ccagagaaga ctgggagcaa ggtctaccgg gcctaaaaga      3000
     ggcagtcaac ttctacactg acggctccaa attaaataat caagtcggag gaggaatata      3060
     ctccgaccaa cttaacatca ggaaatcctt cagacttccg gatcactgca gtgtcttcca      3120
     agcggaagta tatgctataa atgaagcttt gttgctccta aacgatgcaa actgtcaaaa      3180
     gaaatgggta aacatctaca gtgatagtca agcggctatc aggtcgatta tctcgaccaa      3240
     tacaaactct caaactatat caaactgccg caaatctcta catgagatgg ctttgcagtt      3300
     taaagtatac ctaatatggg tcccgggtca ccgaaacatt gcaggcaatt gtattgcaga      3360
     tgagttggcc aggcatggca ctaccgttcc tctccttccg gacaaggaga acattggtat      3420
     gccgatggcc acctgcaagc taaacattaa aaacaaatat aaagaacttg cgagcctagc      3480
     atggacacac gtaagacatt gtcgcatctc tcgccagaca tggccaatta ttaatgcgaa      3540
     gagaacttct gaacttctaa agctaaaccg taccgagtgc ggaatgctaa tacgagtgct      3600
     tacaggccat tggttggtcg gcacacatgc aagcagactg ggcgcgcccc aaaacgattt      3660
     ctgcagaagc tgcagggacg aggaggagga ggaaacggtg gaacacctgt tctgttcctg      3720
     cccggcccta tgcagatcta gactgtacca cttagggaat cccttcatga gcagtctatc      3780
     tgaactggcg aatataagcc taaagcgaat aataaaattc atgaaagcaa ccggatggga      3840
     gctatgctag gtcagctgcg gtaagagcag cagacaataa tataggaaag gggacacaga      3900
     tccacgcggt atcacaatgg accttctagg tctaagtgtg tcaataattt gacagctgct      3960
     ctaacctaac ctaacctaa                                                   3979
//
ID   Loa-2_DF    repbase;    DNA;    INV; 5571 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5571
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 984-984 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1873
FT                 /product="Loa-2_DF_1p"
FT                 /translation="MADLCPGGPYXLRNSWDSIMRKNNTNKLPQDIPASSV
FT                 ARHFENRLLDGERPQVGPSPPRSAATARSASRTQNVGHPPQRSTVPVRERA
FT                 RPAGPSRPARPPPAAGQRTRPAKGQPGGLDDPNGRGLPGSKIKWYLRYLQR
FT                 GMSPDEALRKAKEPRPAAPSSAPASKRGNSTLTPPTDTPKRSKSEGTXEVK
FT                 ATPSRPKPXEPCTSKAAAARRPPPKASAGTLSVPKASEGSAKQPPSISTAP
FT                 LTGTHTSYAEAAKRVRVAVLPEDFPQVHLSHEELSELEEAIMDDVITSAWD
FT                 TAVAFRGIHFRVGYLLIDCLDQDSADWLRAVAPLLRTWKGVPLETRVGEDI
FT                 PAAYNVTVFCPRSAERXNEELLTMLGRQNRLETDAWKVVSRRNDGGGALLV
FT                 IGIDQLTRDEIVARGHQLNFRFGTVSVSGLRKAAKESLGEPQEPMGAEEDP
FT                 IADTDVRSEDEEHPTPSDDXDEXEADVTLTXGSEGERPPPSPXMEHPLQ"
FT   CDS           1876..5520
FT                 /product="Loa-2_DF_2p"
FT                 /translation="MAAHSSTRLAQVNLHRAKAASAVLARLFTNQHLGLAL
FT                 XQEPWCNQGIKGLYTKESKVICDQRGAHPRACILIRKDINYNIFSEFLSSD
FT                 CVAVTVSGAGRLPAIAIASAYFAGDAACPPPEIIGLVECCRRKKMPLIIGC
FT                 DANAHHVIWGSTDVNNRGEQLIEFIVNSNLEIGNVGSTPTFITRVREEVLD
FT                 ITLMSRSLGPLIKNWHVSPEESMSDHRIIRFELDFNTARDAPKRNPKKTNW
FT                 DRFKSSLELDLSNEPSGIPRHSLELDQAVDNLCKKITNAFEDSCPLGRRKA
FT                 DRDAPWWNDNLERLXISTRRLFNRAKTSEDNWGQYKQSLTLYNKEIRKAKR
FT                 KNYRDFCEAISTAHEGARLHKAMAKVAPESNLALRKCDNSYTSDDRDKLAL
FT                 LFKTHFPGSSPLAEDTSNPMEASSTPRHLRPSAEDWAIAKSLVSPERLKWA
FT                 IGTFQPFKSPGLDGISPSFLQQGLDLLLTRLRRLMLSSLAIGHIPNAWRRA
FT                 RVVFIPKAGKKDITNPKSFRPISLTSFCLKTLEKLVDYHIRSTVLKDCPLQ
FT                 PTQHAYRAGRSTDTALYQLCHTLEGAVDNKEVAICAFLDIEGAFDNASHDA
FT                 VLAALARRNIDATTRRWIGALLSSRQAMATIGNSTMTVATSRGCPQGGVLS
FT                 PLLWSLLVDELLKKLADRGIQCQGYADDIVIVAKGKFEETLCDIVQLGLKI
FT                 TLDWCREVGLNLNPAKTVIVPFTKKYKLKKMRQIMLLGTPVAISREVKYLG
FT                 VTFDRRLTFATHMQKTVDKCLRALFTCRKIAGKSWGTSPQIIRWLYLIIVR
FT                 PILTYGSVAWGKRARLVTAQKQLQRLQRLACICMTGAMRTCPTAALEVLME
FT                 LTPLHCVVELQRKATLLRITSCGNGSDRILSSRDAAKLLVELPLSSHPRDE
FT                 MTVEFIFEKNFSAHLSNKKEWTTMKEVHSMASHTIAWYTDGSLTHQGTGLG
FT                 VVGPRIKYHESLGQYTSIFQAEVCAIGRCAELNMKRGYTNKDIAILSDSRA
FT                 AITALCSNRITSKLVREVRTKLNLLGSNNRLSLRWIPGHKDISGNELADRL
FT                 AKLGAERPLIGPEPYCGIGRHTVKDYLRTEEVHMRQACWVDTTGQRQAKTL
FT                 IVNYDMKRFKKLILLGKRSLRIVTGLLTGHCKLRRHLFNIGITNRKTCRFC
FT                 DSEDETSLHIISDCPALSSLRSRTLGSRFLTLGTSGSIDPIKLLNLIEGAG
FT                 LMGEL"
XX
SQ   Sequence 5571 BP; 1576 A; 1478 C; 1460 G; 1040 T; 17 other;
     gagaactagt gagatgttca agagggggct tagctggggc caccaggcgg gtcgcaggtt        60
     gcggatagcg aacggccttc ttcataaggt tagttgtgaa taagcgcaag ctaataagca       120
     accccggaca aacagcgggt acaccgaagt cggtgtactg ataagacgct tgtctggccg       180
     tcttcaaatt gtagcctcac acacccctct tccctcacga ttacctacca acttcccctc       240
     ccacaatctc actccggtgc cggactaagg tgtcatccga cccgtgccga tagtcagcct       300
     ggctgggggc ccggactaac aantagccca gtctctcacg gagggttcag gcaagtggcg       360
     accgcctgtc ctaaccgcgc cttacccggg tatggcggat ctctgcccgg gcggaccnta       420
     cnttctccgc aactcgtggg attcgattat gaggaagaac aacacnaaca aactaccgca       480
     ggacatccct gcctcgagtg tcgcaagaca cttcgaaaac cgactcctcg acggggagcg       540
     accacaggtg ggaccatccc cacccaggag cgcagccacc gccaggagtg cgtctcggac       600
     gcagaatgtg ggacatcccc cacaacggtc aactgttcca gtccgggaac gtgcgcgacc       660
     agcaggacca tcccggccgg ctcgcccacc ccccgcggct ggacagagga ccaggcccgc       720
     caaaggacaa cctggaggcc tagacgaccc caacgggaga ggcctgccgg ggtccaagat       780
     aaaatggtac ctcagatacc tccagcgggg catgtcacct gacgaggcac tgaggaaggc       840
     gaaggagcca cgaccagcgg ccccaagtag tgcacctgcc agcaagcggg gnaacagcac       900
     cctcacccct ccgacggaca ccccgaaaag gtcgaagtca gagggcacta angaggttaa       960
     ggcnactccc tcccgcccaa agcctganga gccttgcacc tcgaaggcgg cggcggcaag      1020
     gagacctccc cctaaggcat ctgctggaac actcagcgta ccgaaggcga gtgaagggag      1080
     tgcgaagcag ccaccctcca tctccacagc ccctctcact ggcacacaca cctcctatgc      1140
     ggaggccgcc aagagggtca gagtggcggt gttacctgag gatttcccac aggtgcactt      1200
     gagccacgaa gagctgtccg agttggagga ggccatcatg gacgacgtaa tcacgtcggc      1260
     atgggacacg gcagtcgcgt ttaggggcat ccacttcagg gtaggatacc tcctcatcga      1320
     ctgcctggac caggactcag cggactggct gagggccgtt gcgcccttgc tcagaacgtg      1380
     gaagggcgtg cccctagaaa ccagggtggg agaagatatt cccgcggcat ataatgtcac      1440
     ggtcttctgc cccagaagcg cggaaagaga naatgaggaa ctcctcacga tgctngggcg      1500
     ccagaacagg ctggagacgg atgcctggaa agtggtctcc cggaggaacg acggaggcgg      1560
     ggcactcctc gtcatcggga tcgaccagct cacccgagac gagatcgtag ctagagggca      1620
     ccagctcaac tttaggttcg gtaccgtctc ggtgagtggg ctcagaaagg cggcgaagga      1680
     atccctcggc gagccacagg agcctatggg tgcagaggag gaccctatcg ccgatacgga      1740
     cgtgaggagt gaggatgagg agcatcccac gccctccgac gatancgacg aganggaggc      1800
     cgacgtcact ctgacggang gcagtgaagg ggaacgcccg cccccttcac caaanatgga      1860
     gcatccgctc cagtgatggc tgcacacagc agcacgcggc tagcccaggt gaacctacac      1920
     cgggccaagg cggcatcagc cgtcctggcc aggttgttca ccaaccaaca tctcgggcta      1980
     gctctcatnc aggagccttg gtgcaatcag ggcattaaag gcctgtacac caaggaatca      2040
     aaggtaatat gcgaccaacg gggtgcacac ccaagagcat gcatattaat aagaaaagat      2100
     atcaattata atatcttttc agagttccta agcagtgact gtgtcgcggt aacggtgagc      2160
     ggcgcaggaa ggttaccagc gatcgccata gcatcggcgt attttgctgg ggatgcagca      2220
     tgcccaccac cggaaatcat cggactcgtg gaatgctgca ggaggaagaa gatgccccta      2280
     atcatcggat gtgacgccaa tgcacatcac gtgatatggg gaagcaccga cgtcaacaac      2340
     agaggtgagc agctaataga atttattgta aatagtaacc tagaaatcgg taatgtcggg      2400
     tccacaccga cattcattac tagagtaaga gaggaggtcc tagacataac tctgatgagc      2460
     aggtctctag gaccacttat taagaactgg catgtgtcgc cagaggaatc aatgtcggat      2520
     caccgaatca ttagatttga attagacttc aacaccgcta gggacgcccc caaaaggaat      2580
     cccaagaaaa caaactggga tcggttcaag tcctctcttg agctcgatct ctctaacgaa      2640
     ccgtcaggta tacccagaca ttccttagaa ttggatcagg cagtggataa cctctgcaag      2700
     aagataacca atgcttttga ggacagttgc cctcttggca gacggaaagc agatagagac      2760
     gccccatggt ggaacgacaa cctggaacgg ctcngaatct ccacccgccg gctcttcaac      2820
     agagcaaaaa cgagcgagga taactgggga caatataaac aaagcctgac gctctacaac      2880
     aaagagatca ggaaggccaa acggaagaac tacagagact tctgtgaggc aatcagcacn      2940
     gcccatgaag gggcaagatt gcacaaggct atggccaaag ttgcaccaga aagtaaccta      3000
     gccctgagga aatgtgacaa ctcttacact tccgacgaca gggataaact agctttactc      3060
     tttaaaacac acttccccgg gagctcaccc ctggcggaag atacgtccaa cccaatggag      3120
     gcatcgtcca ctccaagaca cctcagacca agcgcagagg actgggcaat tgccaagtct      3180
     ctagtctctc cggagagact taaatgggca attgggacct tccaaccatt taagtcacct      3240
     ggtctggatg gtatctctcc atcattcctg cagcagggac tggatttact cctaacccgc      3300
     ttaaggagac tgatgctaag cagcctagca attggacaca tcccaaatgc gtggcgtaga      3360
     gctagggtgg tcttcatccc caaagcaggg aagaaagaca tcaccaaccc aaagtccttc      3420
     agacctatca gcttaacttc gttttgcctt aaaacgttgg aaaagctggt agactaccat      3480
     attaggagca cagttcttaa ggactgtccg ctgcaaccca cgcagcacgc atacagggca      3540
     ggtcgttcaa cagacactgc actgtaccaa ctttgtcaca ctcttgaagg ggcagtggac      3600
     aacaaagaag ttgcaatctg cgcctttctg gatatagagg gagcctttga caatgcgtcg      3660
     catgatgctg tcttagcggc cctcgccaga aggaatatag acgcgacaac aagaaggtgg      3720
     attggagcct tgttaagctc caggcaggca atggcgacca ttggcaacag cacaatgacc      3780
     gttgccacaa gcagaggatg tccgcaaggt ggagtcttgt ctcctttact gtggagccta      3840
     ctagtagatg aactactaaa gaaactcgcc gacagaggaa tacaatgtca gggctatgcc      3900
     gatgacatag taatagtagc caaagggaaa tttgaagaaa cgctttgcga tattgtccaa      3960
     ctcggactca agataacgct cgactggtgc agggaagttg ggcttaacct caaccccgca      4020
     aaaacagtca ttgttccttt tacaaagaag tacaaactaa agaagatgag acaaatcatg      4080
     ctactaggta ctcccgtagc aataagccgg gaagttaagt acctcggagt taccttcgac      4140
     aggaggctaa cgtttgcaac ccatatgcaa aagacagtgg ataagtgcct cagggctctc      4200
     ttcacctgtc ggaaaattgc agggaaatct tgggggacct caccccaaat tatcagatgg      4260
     ttatacctta taattgtgag gccaatactc acatatgggt cagtagcctg gggtaaacga      4320
     gctaggctcg ttaccgcaca gaaacagctc caaaggctgc aaagactggc atgcatatgt      4380
     atgacaggag caatgagaac ctgccccact gcggcactgg aagttctcat ggaactcact      4440
     ccgctacact gcgtagtaga gttacagcgg aaggccaccc tactaagaat cacttcttgt      4500
     ggtaatggca gtgaccgcat cctcagttct agggatgcag caaaactact agtcgaactt      4560
     cccctgagct cacaccccag ggacgaaatg acagtagaat tcatctttga aaagaatttc      4620
     tctgctcatc tgagcaacaa gaaagaatgg accaccatga aggaagtaca ctccatggcg      4680
     agtcacacta tagcatggta tacggacggg tctttaacac accaaggcac tggccttgga      4740
     gtagtaggac cacgaatcaa gtaccatgaa tcgttaggcc aatacaccag catattccaa      4800
     gctgaagttt gcgccatagg acggtgtgca gagctcaata tgaagcgtgg gtacacaaac      4860
     aaggacattg cgatcctctc ggacagtcga gcggcaatta ctgcactatg cagcaataga      4920
     atcacctcga agctggttcg agaagtaaga acaaagctga accttctggg cagcaacaac      4980
     aggctgtcat taagatggat tccaggacac aaagacatat ccgggaatga actagccgac      5040
     aggctagcaa aactaggggc ggaacgaccc cttataggac ccgagcctta ctgtggcata      5100
     ggcagacaca cagtcaaaga ttacctaaga acggaagagg tacatatgag gcaagcctgc      5160
     tgggtagaca ccacaggcca aagacaagcc aaaaccctca tcgtcaatta tgacatgaag      5220
     aggtttaaga aacttatact actagggaag agatcactta ggatagttac cggcttacta      5280
     accggacact gcaaactaag gagacaccta tttaatatag ggattacaaa caggaaaaca      5340
     tgcagattct gtgatagcga ggatgaaacc tccctacaca taatatcaga ttgcccagca      5400
     ctaagtagcc tgaggagcag aaccctcggg tccaggttcc ttacacttgg gacctctgga      5460
     agcatcgacc cgataaagct ccttaacctt atcgaaggag ccgggttgat gggtgagctc      5520
     taagctcaga tagggggtac aatagatcca gttgggtcga ggtaaccttt t               5571
//
ID   LOA-2_DGri  repbase;    DNA;    INV; 5341 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.07, Created)
DT   10-JUN-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila grimshawi.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DGri.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5341
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila grimshawi genome.";
RL   Repbase Reports 12(7), 1327-1327 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1610..5203
FT                 /product="LOA-2_DGri_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLRLRQVNLHHSKAASAALMLRLAGGGDDIVLVQEP
FT                 WVIGGKVCGLGNKNYKLLVAGNEGKKRTCILAKKHLNIFLLHNFSNDDNTA
FT                 VSLELQSASVRLLSVYMAYDSAGPPPDETTRSLVQECEKHSIGLIIGCDAN
FT                 AHHTQWGSTGTNPRGESLLSYILNTNLLVCNTGNEPTFIIKNRREVIDLTL
FT                 ISQSMSDQLIGWRVSDDHSFSDHRYIEFELLASHPEPVHFINQKKANWEIF
FT                 KAKLDRTLSEHPPKGPDNLAHLCNLTETFTSACNKAFKAACPISKPVHKKK
FT                 PPWWTPQLNVLRQSCRSLFNAAKAQNNDQQWSKYKSSLAEYKKATRREKRK
FT                 SWRDFCTEIDSTTEAARLRKVLSKTTPALGYLKKDDNSWSVSSEESLEILL
FT                 NTHFPGCSEQTPRCAETSGIESTVLKSLINKNNIKWAVNSFKPFKSPGPDQ
FT                 ISPVQLQKAGNTAINWLHEIFGKILKTGCIPPTWLQSKIAFIPKAGKPSHT
FT                 SAKDFRPISLSSFLLKTLERLISLHLTASIDPRLMSESQHAYRKGRSTDTA
FT                 LHSVISIIEKSLLYKEYTLIAFLDIEGAFNNVTPAAITAALLNLGFDTGLV
FT                 GLISQLLTCRTVTSTLGSSTLSRFVSRGTPQGGVLSPLLWNIAINKLLWDM
FT                 EGGGCKMVAYADDVAVIFRGKYPQTLCDLMTSKLKILSCWAQESGLGVNPN
FT                 KTELVLFTRNYKVPSLVPPRLNNVNLLFKDSANFLGLTLDRKLDWNLNTQT
FT                 RVKKATVALYTCRKSIGLKWGMSPNIVRWLYTSIVRPILLYGVAVWWPCLK
FT                 KKTTLSKLNKVQRMAELCISGALRTTPSEALDAILDIPCLERQGMENATLT
FT                 AIRLRESLAWTTQSTGHASILEGKPTIPSKTDYCVPVTQLGTPFNTYFPQR
FT                 EEWVHGTPGPPATITFFTDGSKLDNRVGGGVYSEQLNLQLSFSLPTHCSVF
FT                 QAEVLAIKEALDCLDRLKVSPGYINIYIDSQAAIKSISSISSNSISVTSCR
FT                 KSLHEMAKQHVISLIWVPGHQDIEGNCKADELARKGTILPLLTDKEGISMP
FT                 LATCKLNIREEHRRRSCEKWQNATCARIAHQTWPIIDSKRSKELCSLSRTN
FT                 CSAVIRALTGHWLVGIHANRLQVPHNDFCRSCKEEEEVESPEHFFCLCPAL
FT                 ARKRLAILGNYSLNSLSELRYMRLAKIAKFINASGWANI"
FT   CDS           join(354..740,469..1647)
FT                 /product="LOA-2_DGri_1p"
FT                 /translation="MYSKKPQKESGTLPKPVGSNPKHVAEAVARKPGQSGS
FT                 MTKVAEKPVCQASGEGAAGKNPDPSDSVAGKXSTSAANLPAGAGAKGDLPT
FT                 TSAAAKRFSCANTQPNPPAEWQNKVVWARKVLPNFCEAPPQQKWRKSLFVK
FT                 PAARVQLVKTPTRPTPWQGXKALVQPTCQPERVRRAICQPPARRLKGSAVR
FT                 TLSQIHQPNGRIKWXGLGRCCQTSVRLHPNKEQSQAKRQRSQEAHGPVAKR
FT                 AKVQQGRSFADIAKERILIGILDKGSKDGRIPRNQWKWVEGALAVQCLKLL
FT                 SKAPGPPPVCRDAGWYQGNTKVIACQDARSVELYKAAVAELGEVYPGAKLV
FT                 AVDWSEVPSRPRARIWIPASLKEPDQVLNLLQLCNPSLPTQDWRVVKIEAT
FT                 EGPTNQAVLILNKESLAPIEAAKGELNFGFGSITVKVYKSDAPAGGDPAVC
FT                 KNTAEQAPPAEIGATDEELEPGYTSDTSTLTRGLEALCHELDEDDFTLSDE
FT                 DDSNNTVVRGKSPDVLETTAGKPSPQ"
XX
SQ   Sequence 5341 BP; 1541 A; 1370 C; 1290 G; 1138 T; 2 other;
     cggcaaaaat tcctcaactg aaccctccac gagggtgccg actggaaata gcatcacagt        60
     ggtcctgcta ggtaccgatg ctagctaaga ctcgtgccct gaacctccga cataaactgc       120
     atccatagtc ttgtcgctgg gaaaggaccg agtcatggtt cgaggtaaag ggccggacta       180
     aggtgtcatg cgacccgtgc cgatagtcag ccaggctggg ggccctaaaa taacccagtc       240
     ttacacggag catatcggat acctggcgac ctccgatatt aatcagcctt acctgcacat       300
     cgcggatctc tgtgcaggtg gacatctttt ctccgcagct cgtgggaatc caaatgtatt       360
     ccaaaaaacc acaaaaggag tccggtactc tcccaaaacc ggtagggagc aatcccaaac       420
     atgtagcgga ggcagtggct cgtaagcctg gccaaagcgg cagcatgaca aaagtggcgg       480
     aaaagcctgt ttgtcaagcc agcggcgagg gtgcagctgg taaaaacccc gacccgtccg       540
     actccgtggc agggaagsaa agcactagtg cagccaacct gccagccgga gcgggtgcga       600
     agggcgattt gccaaccacc agcgcggcgg ctaaaaggtt cagctgtgcg aacactcagc       660
     caaatccacc agccgaatgg cagaataaag tggtktgggc taggaaggtg ctgccaaact       720
     tctgtgaggc tccaccccaa taaagagcag agccaggcta aaaggcagcg ctcgcaggaa       780
     gcacacggtc ccgtcgcaaa acgggccaag gtgcagcagg gaaggtcctt tgctgacatt       840
     gccaaggaga gaatccttat agggatcctt gacaagggaa gcaaggacgg cagaatccct       900
     agaaatcagt ggaagtgggt ggaaggagcc ctcgctgtcc aatgcctgaa gctgctaagc       960
     aaggcgcctg ggccaccacc tgtatgcagg gatgctgggt ggtaccaggg taacacgaag      1020
     gttatcgcct gccaagacgc tcgctcagta gagctttaca aagctgccgt agcagagctt      1080
     ggtgaggtct accccggggc gaagctggtc gctgtcgact ggagcgaagt cccgagcaga      1140
     cctcgtgcac gcatctggat cccggcctcc ctaaaggagc cggaccaggt gcttaacctt      1200
     ctgcaactct gcaacccctc tctccccacc caagactgga gggtggtgaa gattgaggcc      1260
     accgaggggc caacaaatca ggcagtgctg attcttaaca aggaatcgct ggccccaatt      1320
     gaagccgcca agggcgagct aaacttcggc ttcggctcca ttaccgtaaa ggtatacaaa      1380
     tcggatgcgc cggccggagg agaccctgct gtctgcaaaa acacagccga acaggctcct      1440
     cctgcggaga tcggagcaac cgatgaggag ctggagcctg gctacacgtc ggacacgtcg      1500
     actctgactc ggggccttga ggccttgtgt cacgagttag acgaggacga ttttacgctg      1560
     tcggacgagg acgacagcaa caacacggtg gtgaggggga aatctccgga tgtccttgag      1620
     actacggcag gtaaaccttc accacagtaa agcagcatcc gctgctctga tgctccgcct      1680
     ggctggaggc ggagacgata tagtactagt ccaagaacct tgggtgattg gaggcaaggt      1740
     ttgcggacta ggaaataaaa attataagct attagtagct ggaaacgaag gtaaaaaacg      1800
     tacctgcatc ctcgcgaaaa aacatctaaa tatttttctg ctccataatt ttagtaatga      1860
     tgacaacaca gcggtaagcc tggagctcca gtcagcttcg gtaaggctac tgtctgtcta      1920
     catggcctac gacagcgccg gcccaccacc agacgagact acaagatccc tcgtccagga      1980
     gtgcgagaag cacagcattg gcctaatcat aggctgtgac gccaatgctc accacaccca      2040
     gtgggggagt acgggcacaa atccgagggg tgagtcactc ttatcctaca ttcttaatac      2100
     taacctctta gtatgtaata cgggaaatga acccactttt attattaaaa atagaagaga      2160
     ggtcattgat ctgaccctta tctcacaatc tatgagcgat cagctaatag gttggagagt      2220
     gtctgacgat cactccttct ctgatcacag atacattgaa tttgagctcc tcgcgagcca      2280
     tccagaacca gttcacttca taaatcaaaa gaaggcgaac tgggaaattt tcaaagccaa      2340
     acttgaccga accctttcgg aacacccacc gaaaggcccg gacaacttag ctcatctctg      2400
     caatctgaca gagactttta cttctgcatg caataaggct tttaaggcag cttgtcctat      2460
     cagtaagcct gtgcacaaga agaaaccacc atggtggaca cctcaactaa atgtccttag      2520
     acaaagttgc aggtctctct ttaatgcagc gaaagcgcaa aataacgacc agcaatggtc      2580
     aaaatacaaa tcaagtctgg ctgaatataa aaaagccacc agacgagaaa aaaggaaatc      2640
     ttggagagat ttctgtacgg agatcgattc aactacagaa gctgcaaggc ttaggaaagt      2700
     tttatcaaaa accacacccg cacttggtta tctgaaaaag gatgacaatt cctggtcggt      2760
     ctccagtgaa gagtcactgg aaatcctcct taatacacac ttccctggct gctccgagca      2820
     gaccccgagg tgcgcagaaa ccagcggtat agagagcaca gttttgaagt ctcttataaa      2880
     caaaaataac atcaaatggg cagtgaacag ttttaagccg ttcaaatccc caggccctga      2940
     tcagataagc ccagtccaat tacagaaggc gggaaacaca gccataaact ggctacatga      3000
     aatcttcggg aagattctga agactggttg catcccaccc acatggctcc agtcaaaaat      3060
     agccttcata cccaaagctg ggaagccatc gcacaccagc gccaaagatt tcagacccat      3120
     cagtctgtca tctttcttgc taaagacctt ggaacgactt ataagtctcc atctcacagc      3180
     atccattgac cccaggctta tgtcggagtc tcaacatgcc tacaggaagg gcagatccac      3240
     agatactgcc ctccactctg tgatctccat tatagagaaa tccctacttt ataaagagta      3300
     cacccttata gcgtttctcg acattgaggg cgcctttaac aacgtcactc cggcagccat      3360
     aactgcagct ctgctgaacc tggggtttga caccggtctg gtgggcctga tcagtcaatt      3420
     gcttacttgc aggactgtga catccacact agggtcgtca actctctcca ggttcgtgag      3480
     cagaggtacg ccacaaggag gcgtcctgtc acccctacta tggaacatag caattaacaa      3540
     attgctgtgg gacatggagg ggggcggctg caaaatggtt gcatatgcag atgacgttgc      3600
     agtaattttc aggggaaaat acccacaaac tctttgtgac ctcatgacta gtaaactaaa      3660
     aatactgtca tgctgggctc aagagagtgg attaggggta aaccccaata aaacggaact      3720
     tgttcttttt acaaggaact acaaggtccc ttctcttgtc ccacccagac taaataatgt      3780
     aaatctactt ttcaaagaca gtgccaattt ccttggattg acactagaca gaaaactaga      3840
     ttggaacctc aatacccaaa cacgggttaa aaaggcaaca gtcgccctat atacgtgtag      3900
     gaaatccatt gggctgaaat ggggtatgtc cccaaatatc gttcgatggt tatacacatc      3960
     catagtcaga cctatacttc tgtatggcgt cgcagtatgg tggccctgtc taaaaaagaa      4020
     aaccaccctt tctaaactaa acaaggttca gcgtatggct gaactatgca tatcgggggc      4080
     gcttcgtacc acacctagtg aggcacttga cgctatcctg gacattccgt gtctggaaag      4140
     acaaggaatg gaaaatgcaa cacttacggc cataagactc agagaatccc tcgcctggac      4200
     tactcagagc actggtcatg cctctatctt agaagggaaa ccgaccatcc cttctaaaac      4260
     agattactgc gtgccagtaa cacaattggg aacacccttc aacacatact tccctcaaag      4320
     ggaagaatgg gttcatggca cccccggtcc accggcaacc ataaccttct ttacagatgg      4380
     ctcgaagcta gacaaccgtg taggcggagg ggtctactcc gagcaactca atttacagtt      4440
     atccttcagc cttccaacac actgtagtgt ttttcaagct gaggtactgg ccataaagga      4500
     agctttagac tgcctagata ggctcaaagt cagccctggc tatataaata tatatattga      4560
     tagtcaggca gcaatcaaat caatcagctc gatatcttcc aattcgatat cagtaacaag      4620
     ctgccgcaaa tctctacacg agatggctaa acagcatgtt attagcctga tatgggttcc      4680
     tggtcaccag gacattgaag gcaactgcaa agccgatgag ttagctagga aaggtaccat      4740
     actgccgctc ctcacggaca aggaaggtat tagtatgcct ctagctacct gcaagctcaa      4800
     tatcagggag gagcataggc gcaggtcatg cgaaaaatgg caaaatgcca cctgtgcccg      4860
     catagcacac cagacatggc caatcattga ctccaaacgc agcaaagagc tgtgcagtct      4920
     gagtcggact aactgttccg cagtgatccg ggctctaact gggcactggc tggttggcat      4980
     tcatgccaat agactccagg tgccacacaa tgacttttgc agaagctgca aagaggagga      5040
     agaagttgaa tctccggaac actttttctg cctctgccca gcacttgcca ggaaaaggct      5100
     ggcaatcctg ggaaactact ccctaaatag tttatcggag ctccgatata tgagactggc      5160
     caagatagcg aaattcataa acgcatcggg ttgggcaaat atttaaatat atgttggaat      5220
     gctgaaggca cgactgcagg aggaaatccc tagatcccct ttttcggtaa cacaacgggc      5280
     caaatatggc ctaagtgtgt cagcctaccg ggctgacagc cgatataacc taacctaacc      5340
     t                                                                      5341
//
ID   Loa-2_DK    repbase;    DNA;    INV; 5445 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.07, Created)
DT   02-JAN-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5445
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1352-1352 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           806..1378
FT                 /product="Loa-2_DK_1p"
FT                 /translation="MKRRAKPTRATLADKARXLAVIEEYERYEKEHPETSL
FT                 PPQAKRNRSQEVSESAPKRAKDAKGAPRPTTFVKPAKKFSEVARDSLAMAL
FT                 VDELNDDGRLLMEKWEEVETQLAEMVTDKLLSEPTGQSPSFDSSDMVRGHR
FT                 VIRCDDEFSRDFLADCVARLGKAWKGISIKAGPRQGHPKETQSSHLVAQGA
FT                 V"
FT   CDS           2113..5340
FT                 /product="Loa-2_DK_2p"
FT                 /translation="MQWAEETKTTLILGCDANARHTLWGSKETNERGESLF
FT                 DSIICRDVTICNKGNTPTFIFPSTEGFQGWEEVLDITLQMEHSDYKVRNWR
FT                 VSTQDSFSDHRYIFFEIVMPICETAPKRNPRNTDWDKYGKIVQSKVKDRRI
FT                 KTRSTPERIDKEVEDFTNILNKAYKESCRLTYSKKTYPPWWNKELCELRKK
FT                 VRKAFNTSYGTKDWQPYKAIHKEYKKAIYVAKKESWSSYCESLEGVKDTAR
FT                 LSKILSRGHTSPTLINKPDGTGSTSAEESLEILLNTHFPGNQKEEPRIMES
FT                 QGADQQLQVEEIITMERIHWAIDSFDKYKSPGPDGVIPAMLQTTKASTGKW
FT                 LQAIFQACIKTAHIPLPWKEARVVFIPKPGRRGHIQAKDYRPISLTSFLMK
FT                 TLERIIDIHIRERTEKNLSNAQHAYRKGRSTETALHEVVRYIEKALLFKNY
FT                 AMATFLDIEGAFNNVNADSILSSLNGIGVEGGIRAWIGAMLTSRRITAELS
FT                 GTHHTRFVKRGTPQGGVLSPLLWLINMDDVLRTLNSEGVKVVAYADDVVLL
FT                 TSGPFPDVISELMTRALTKLNAWAKACGLGINPSKTELMLFTRRTKVPSFT
FT                 KPKIDGIELEISQQAKYLGVILDAKLSWKQNINERVKKASIAFYSCRKMFG
FT                 KNWGIHPRIIIWLYTAVVRPILTYGALVWWPALTRAYNVQKLTRIQRSACA
FT                 GATGALRSCPAAALNAILNIIPIEHFIRNTAAQGAVRLKASQSWKDYHTGH
FT                 CRILNEINYRTTVDTDYMTTELRFGNTYTTIYPTREDWKRGRVTEPDEVSL
FT                 YTDGSKMSGGVGAGIYAESWKVEEYFHLPESATVFQAEVLAILKAAELSLD
FT                 RGLRNTKVRIYSDSQAAIKSLAQARTTSKLVAKCKGALNRLAEDNRVQIAW
FT                 VPGHNDIDGNEKADELARKGSEEHSATTDIQISLNSVQTEIHDHFKQLASK
FT                 EWSTKAEHRRSKLCWPEFNRKXTAELISKSKKDIRRVAATITGHWPIGTQA
FT                 CKMGLPYNPQCRSCKEPSEQETPEHLLCHCPALNKQRARHFGAHQLESLGE
FT                 VGRQPVAAILAYLNDTGWY"
XX
SQ   Sequence 5445 BP; 1728 A; 1399 C; 1425 G; 888 T; 5 other;
     gggggtggta tgggtgtacc aatccaaggc aaagtcaaca gggcaactgt tgatgaatat        60
     tccttggctc taatggtaca ccaagtcgac tcgtaggtga atatcggttt gatagacacc       120
     accttctcct gggagaaggt cctccgcgtg gtacctcctg gaaacgtact gcggtacggc       180
     caatgcgagc ggcacctcca gtgaatccct cacctaataa tcctctgcct cccaatccct       240
     accgagacat gggcaagtct taaaactacc tcccctcaag tcaggcgtgt aaagcgaccc       300
     gtgcccactg actataaggt tcgcagctga ggggttaaac cagctgtgtt cgaacggagc       360
     cttcccaggg ccgggcaacc ctgggtcgga acgagccttg ccgtggctta ggggcgaagc       420
     cacggtcgac cttccttcaa tgccccgaac ccctcgggcc cgccgcgctc gccctgtcga       480
     gcaacgcggg cgtttatgaa aatgaacaca actaaaaaat ccgcttcgga cctcgtgggg       540
     gaggtaaaac cccaccacaa atcgacggaa agcgaattgg acgaggagga gctactgcgc       600
     tcagacgacg agacgctagc tccgtccaat acagagggag gtgtaaagac aagcacacct       660
     caaacgacac aaccgaagca cactaaagcg gcggcaagcc aagccaaagc gaccggcgaa       720
     cacgggaaga caaaaccgtg gacccaccaa caacgaaagg cgcaggcaag caaggcccat       780
     ttcatcctcg ccaaaatagc gaggaatgaa aaggagggca aagccgaccc gcgcgacgct       840
     agcagacaaa gccagatncc tngcagtgat cgaggaatac gagcgctacg agaaggagca       900
     cccagagacg tctttgcctc cccaagcgaa gcgcaaccgc tcacaagagg tgagcgagag       960
     cgctccgaag agagccaagg acgcnaaggg ngcaccgaga ccgaccactt tcgtcaaacc      1020
     ggcgaaaaag ttcagcgagg tggccagaga cagcctcgca atggcacttg tcgacgagct      1080
     caacgacgat gggcgccttc tgatggagaa atgggaggag gtcgagaccc agttggcgga      1140
     gatggtaacc gacaaattac tgtccgagcc aacgggccag tcaccctcct ttgactcctc      1200
     ggacatggtt agggggcacc gggtaatcag gtgcgacgac gagttctcgc gggacttcct      1260
     ggcggattgc gttgccagac taggcaaggc atggaagggg attagcatta aagctggtcc      1320
     ccgccaagga catcccaagg agacccagag ctcgcatttg gttgcccaag gggctgtcta      1380
     gccatgaaag ggtgctcaag actctgcgag cgatgaacaa gggagtcgac atggaggact      1440
     gggccattct caaagctgaa cgagaaatga agtccagcca gccatatctg ttcctgatca      1500
     accagcgctg cctagaacag ctgaaggcag cagacaacaa agtccggtac ggcatcagga      1560
     aagccaaggt gaaggtcttc ctagacgaac cggacgatat tctggaagac gaagtcgagg      1620
     acgccaataa gctgctggac gatttggcga tcgacgacag cacccccaac accaccccga      1680
     tctaatgccg acggtcgttc agataaacct gaagcgcagc tcccacgctt cagctaatct      1740
     gggggtcctt ctccgggaga aggacatcga catcggcctt atacaagagc catggacaag      1800
     ggacggacga atctctggca tggccataaa gggatacaca acattataca caaactcgac      1860
     aggtaggccg agggcgggta taatcattaa aaacaacctt aatgctcttc tctaccccaa      1920
     tctcagcaac ttagatctag cagtggcaag attcaaggcg gcggatggga cagccatact      1980
     aatagcctcc ggatacatgg cccacgacga acctgcacca cctgaagcgt ttaatagggt      2040
     gatgcagtgg gccgaggaga ctaagacgac gctcatcctc gggtgcgatg ccaacgcaag      2100
     gcacacaggg tgatgcagtg ggccgaggag actaagacga cgctcatcct cgggtgcgat      2160
     gccaacgcaa ggcacacact gtggggaagt aaggagacaa acgaaagggg tgagtctctc      2220
     ttcgatagta ttatatgtcg tgacgtcact atttgtaaca agggaaacac gcccaccttc      2280
     atctttccaa gtacggaagg atttcagggc tgggaagaag tcctagacat aaccctccaa      2340
     atggagcata gcgattataa ggtaagaaac tggagagtct ctacacaaga ctcgttttca      2400
     gaccacaggt acatattctt cgaaatcgtg atgccgatat gtgaaacggc gccgaagcga      2460
     aaccctcgta acactgactg ggacaaatac ggaaagattg tacagtcaaa ggtcaaagac      2520
     agaaggatca agactcgatc caccccggag agaatagata aggaagtcga ggacttcaca      2580
     aatattctga acaaagccta caaagagtca tgcagactaa catactctaa gaagacatac      2640
     ccaccatggt ggaacaaaga gctatgcgag ctcagaaaga aagttcgaaa agccttcaac      2700
     acaagttacg gaaccaaaga ctggcagccg tacaaagcaa tacacaaaga atacaaaaag      2760
     gcaatctacg tagccaagaa ggaatcttgg agcagctact gtgaatcgct tgaaggagtc      2820
     aaagacacgg cgaggctaag taaaatccta tcgagaggac acacaagccc cacgctcata      2880
     aacaaacccg acgggacagg aagtacgtcg gctgaagagt cactggaaat cctgctgaat      2940
     acgcacttcc caggaaacca aaaagaagaa cctagaataa tggaaagcca gggggcagac      3000
     cagcagctac aagtagaaga gatcatcacc atggaaagaa tccattgggc gatagattcc      3060
     ttcgacaaat acaaaagccc gggtccggac ggagtaatac cggcaatgct acaaacaaca      3120
     aaagcaagca cgggaaaatg gctgcaagca atcttccagg catgcattaa aacagcacac      3180
     ataccacttc catggaagga agcgagggta gtcttcatac caaaaccagg aagaagggga      3240
     cacatccaag ccaaggatta taggccgata agccttacct ccttcctaat gaaaacactg      3300
     gaacggatca ttgatatcca catcagagaa agaacggaga aaaacctttc caatgcgcaa      3360
     catgcgtaca ggaaaggccg atccacggaa acagcattac acgaggtagt gcgatacata      3420
     gaaaaggctc tacttttcaa aaactacgcc atggccacct tcctggacat agaaggagcc      3480
     tttaataacg tcaatgcgga ttccatcctg agctccctca acggtatagg agtagaggga      3540
     ggcatcaggg catggattgg cgcaatgctg acgagcagga ggataacagc cgaactgagt      3600
     ggcactcatc acacaagatt tgtgaagagg ggcacacctc aggggggagt cctgtcccca      3660
     ctgctctggc tgataaacat ggacgacgta ctaagaacac taaatagcga aggagtaaaa      3720
     gtggtagcat acgcagacga cgtagtccta ctcacttcag gaccattccc cgacgtcatc      3780
     agcgaactaa tgacaagggc actcactaaa ctcaatgcat gggcaaaagc ctgcggattg      3840
     ggcataaatc caagtaaaac ggaactaatg ctcttcacta ggagaactaa ggtccctagc      3900
     ttcacaaagc caaagataga tggcatagaa ctagagatat cacagcaggc aaagtatctg      3960
     ggagtgatac tggatgcgaa actgtcatgg aaacaaaaca tcaacgagag agtcaagaaa      4020
     gcaagcatag cattctattc ctgcaggaag atgttcggaa agaactgggg catccacccc      4080
     aggataataa tatggcttta cacagcggtg gtaagaccca tactcacata cggagcacta      4140
     gtatggtggc cagcattaac tagggcatac aacgtccaga aactaacaag gatacagaga      4200
     tcggcatgcg caggagccac gggagcactg agatcatgcc ccgcggcggc gctgaacgcc      4260
     atcctgaaca taataccgat agagcatttc atcaggaaca ctgcagcaca aggtgcggta      4320
     cgacttaagg ctagtcaaag ctggaaagac taccacaccg ggcactgcag gattctgaac      4380
     gagataaact atcggacgac agtagacaca gactacatga caaccgaact gcgattcggt      4440
     aacacataca ccactatata ccctacaagg gaagactgga agagagggag agtaaccgaa      4500
     ccggacgaag tatcactcta caccgacggc tcaaagatga gcggcggagt aggggccgga      4560
     atctacgccg agagctggaa ggtggaggaa tacttccacc tcccagagtc agcgacggtt      4620
     ttccaggcgg aggttctcgc gatactgaaa gctgccgaac tttcgctaga ccgaggcctc      4680
     cggaatacca aggtgaggat atactcagat agccaggcgg cgatcaaatc cctcgcacaa      4740
     gcacggacga cttcaaaact agtggccaaa tgtaaagggg cactaaacag actagcagaa      4800
     gacaacaggg tacaaatagc ctgggtaccc ggacacaatg acatagacgg aaacgagaaa      4860
     gcagacgagc tggccagaaa agggtcagaa gaacactcag caacaacaga catacagatc      4920
     tccctgaact cagtccagac ggaaattcat gaccatttca aacaactagc cagcaaggaa      4980
     tggtcgacga aggcagagca cagaagatcg aaactatgct ggccagaatt caataggaag      5040
     ngaaccgcag aactgatctc caagagcaaa aaggacatca ggagggtagc ggcaaccatc      5100
     accggccact ggccaatagg cacgcaagcc tgtaagatgg gtctacccta caacccacaa      5160
     tgcagaagct gcaaggaacc aagcgagcag gagacaccag agcatctgct gtgccactgc      5220
     ccggcactca acaaacaaag agcccgacac ttcggagcac accaactcga gtcactaggg      5280
     gaagttggaa ggcagccagt agcggccatc ctagcttacc tgaatgacac gggctggtac      5340
     taagaagggc gcagacaaca gcaaatcgag ggtgtggatc aaaacggagc tcagctctaa      5400
     ttggaggcgg ccagggctgc ctcaccactt atacctacct accta                      5445
//
ID   LOA-2_DPer  repbase;    DNA;    INV; 4935 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila persimilis.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4935
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1664-1664 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. ~79% identical to LOA-2_DYa from
CC   Drosophila yakuba.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1269
FT                 /product="LOA-2_DPer_1p"
FT                 /translation="TTKTTHSVACKLSRTDAVVDTDTDLESVLSLSRTDEE
FT                 SLLRSPEPGTSSLRREGPKRSKEGMKAKAQYKAALNIKSRLQGKADISQEE
FT                 KVKLAWAEQRVEEGRLHYAQMPQMRASNGEYANKVEEMMATKRQRSTESAI
FT                 KDTPASKRQRGPRSAAPPPKAAKKPTKPKAKVSEVTKRHLIVALIDRSEEN
FT                 GKMSAAQWKLVHARLVDALFAQMEEDPAAPMPTFDGAGWLNGVKILKCNDD
FT                 PTLRWLTRTVCQLEAMWEGAKLEVVDRELIPSKPKAKVLFPITIQGDRALK
FT                 LLQRQNADVPTADWRILHIGSPLPNEGGQCVILQINKEAEDLLYPKFGKMA
FT                 WGMGSVYLRLKKRHPEDKDAHTLQAGEVEKDLGLESIVEAAQGLALEDEEE
FT                 EDGDLTLVVNPSGASEPATHAECAAAQLA"
FT   CDS           1241..4822
FT                 /product="LOA-2_DPer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MLSVLQLNLHKSKVASAELLIAMEQGLADIALVQEPW
FT                 IATGNSVAGLKSSNHNLFYSTSVSRSRTVVLVRKGIHAYLMSHYSTDDLTV
FT                 VMLESEEKRLLVASCYMAHDRPAPPDELRSLVTEAGTKNYQLVIGTDANAH
FT                 HNVWGSTDINDRGESLLDFILATNLYIANVGEEHTFVGPTSSNVLDLTLAT
FT                 GNSTTVSSWRVLDRPSFSDHKYIQFKCEFKHPSKTTVYRNPRNTNWAKFKK
FT                 TVTSKLANPGSVKSAEDIEKSLKTLSNELLNAYHASCKPSRTKRRSKPLWW
FT                 NRDLSLQRNNLKEFFKIAKQANEEIVNEEYKILLRSYKKEIRKAQRNSWRN
FT                 FCSNIEKVPETARLRKLLSKQPTVQSQLKLDNGQWTEGSKEALTALMEAHF
FT                 PGCTEVTDAKEHQDLATEEQHPPIGLLTTKRIHWAIDSFAGIKAPGLDGIF
FT                 PAMMQLTKEVITPWLLAIYSACLSTGYIPIQWRTSRVVFLPKAGKCSHVSP
FT                 KDYRPISLTSFILKTLEKLLDLHIRNEVEGLMSTNQHAYTKGKSVETALHS
FT                 LVATIESALHNKKYALGAFVDISGAFNNVATTAITSRLEANNIHPAINVWI
FT                 KNLLSCRRVQSEWGTASMVKGAHRGTPQGGVLSPLLWNLVVDDLIKRFERK
FT                 APKITAYADDISILITGVCPSTLSSLMERTLREIREWAEEVGLSINADKTD
FT                 LILFTKRYKVPIWTPPKIDQTRLTPKSQVKYLGTVLDSKLAWRPNVVERVK
FT                 KATIALYASKKMLSSTWGLSPALMHWIYISVVRPTLLYGALVWWQATEKKT
FT                 YHKLMEKTQRQALLCITGALRSTPTKALETILGIDPLDIHARLIAGKAAQR
FT                 LIASGNLSPQGYGHSSIGREMTRSTDYMTPQTCLDVKTTTSLGPEDWKIGR
FT                 DQTEHLNIYTDGSKMDGGVGAGLYCTDPEIRLSYKLPDPCSIFQAEVFAIG
FT                 KAAEVALLTERAHDAVNLFVDSQAAIRSMQSSVVSSRSVLASREALDILST
FT                 TKTVRIYWVPSHQGIEGNEAADVLAKEGVGLENRRTENVPVSLRTLQGDLE
FT                 KQARAQTDSRWRSTTTCRTSKIMCKERNEKLSHYLLHLPRKDCRLMVGILT
FT                 GHCLAAAHAAKLGITNRDSCRKCEEPGAIETLEHLICNCPALSRARRRYLG
FT                 APVLASLEDASKRTPQELLAYAKNTSILGDFLKPH"
XX
SQ   Sequence 4935 BP; 1440 A; 1326 C; 1315 G; 854 T; 0 other;
     acaacaaaaa caactcactc cgtggcctgc aagttgagcc gcacagatgc cgtagtcgat        60
     acagacacgg atctggagag cgtgctctct ctaagcagga cggacgaaga gagccttctc       120
     cgctcgccgg aaccaggcac cagctccctg cgtagggaag ggccgaagcg ttccaaggag       180
     gggatgaagg ccaaagcgca atacaaagcg gccctcaaca taaaaagccg gctgcaaggc       240
     aaagcagaca tctcccagga ggagaaggtc aagctagcct gggccgagca gagagtagag       300
     gagggtcggc tacactatgc ccagatgcca cagatgaggg cgtcgaatgg cgaatatgcc       360
     aataaggtgg aggagatgat ggccaccaag aggcaacgct cgactgagag tgccattaag       420
     gacactccag cgagcaagcg gcaacgcggg cccaggagtg cagcccctcc accgaaagcg       480
     gccaagaagc caacgaagcc gaaagcgaag gtcagcgagg tgaccaaacg acacctgatc       540
     gtggcactca ttgaccgcag cgaagaaaac ggcaagatgt cagcggcaca gtggaagctg       600
     gtgcacgcgc gtcttgtcga cgcactcttt gcacagatgg aggaagaccc cgcggcccca       660
     atgcccacgt tcgatggtgc tgggtggcta aatggggtta agatcctgaa gtgcaatgat       720
     gatccaaccc taaggtggct gacgcgtacg gtctgccaac tggaggcgat gtgggagggg       780
     gccaagctgg aggttgtgga ccgggagctt atcccgtcca agcctaaggc gaaggtactc       840
     ttccccatca caatccaggg ggaccgagcg ctgaagctcc ttcagcggca aaacgcggac       900
     gtgccaacgg ccgattggag gatcctacac attggtagcc cactacccaa cgaggggggc       960
     cagtgtgtga tcctccaaat aaacaaggaa gcagaggatc tgctataccc caagttcggg      1020
     aagatggcgt ggggcatggg tagcgtctac ctgcgcctca aaaagcgcca ccctgaggac      1080
     aaggacgcgc ataccctgca ggcaggcgag gtggaaaagg acctaggtct cgagtccatc      1140
     gtggaggccg cccagggtct tgcgcttgaa gacgaagaag aggaagacgg tgacctgacg      1200
     ctggtagtca acccgtcagg tgcaagtgag ccagccaccc atgctgagtg tgctgcagct      1260
     caacttgcat aaaagcaagg tagcgtcggc ggagctcctc atcgccatgg agcaagggct      1320
     cgccgacata gctctagtcc aggagccctg gattgcgaca ggcaattcag tggccggact      1380
     aaagtcctca aatcataacc tgttctactc aacatcggta agcaggagca gaaccgtcgt      1440
     actcgtacga aagggaatcc atgcttacct tatgtctcat tacagcacgg atgacctgac      1500
     ggttgtgatg ctggaaagtg aggaaaagcg ccttctggtg gcttcctgct acatggctca      1560
     cgacagaccc gcaccacccg acgaactcag gagcctggtg acagaagccg gcaccaaaaa      1620
     ctatcaactc gtcatcggaa cggacgccaa cgcccaccac aatgtgtggg gaagcaccga      1680
     catcaatgac agaggtgagt cactcttaga ctttatacta gcaactaatc tatatatagc      1740
     aaacgttggg gaggagcaca ccttcgtagg tccgacctca tccaacgtgc tagacctaac      1800
     acttgcaacg ggaaacagta ctacggtatc tagctggagg gtcctcgata gaccatcctt      1860
     ctcagaccat aagtacattc agttcaagtg cgaattcaaa cacccttcga agacaacagt      1920
     ctatagaaac ccccggaaca caaactgggc aaagtttaaa aagacagtta cttcgaagct      1980
     cgcgaatccg ggctcagtga aatccgcgga ggatatagag aagtccctaa agaccctatc      2040
     caacgagcta ctgaacgcct accatgcatc gtgcaaaccc tcgagaacga agaggaggtc      2100
     caagccactc tggtggaacc gagatctctc tctccaaagg aacaacctca aggaattctt      2160
     caagatcgcc aaacaagcga acgaggagat tgtcaatgag gaatataaaa tcctacttag      2220
     gagctacaag aaggaaatac gtaaggcaca aaggaactcg tggagaaact tctgctccaa      2280
     catcgagaaa gtgcccgaaa ccgccaggct tcggaagctg ctttcaaagc agcccacagt      2340
     acagagccaa ctaaaactag acaacggaca gtggacagag ggcagcaaag aagccctaac      2400
     agcactaatg gaggcgcact tccctggatg caccgaggtc actgacgcca aggagcatca      2460
     ggacctagca accgaggaac agcaccctcc aataggtctg ttaaccacta agagaatcca      2520
     ctgggccata gactccttcg cgggcataaa agcaccagga ctggacggga tattcccagc      2580
     catgatgcag ttgaccaaag aggttattac cccatggctc ctcgcaatat actcagcatg      2640
     cctaagtacg ggctatatcc ccatccaatg gagaacctcg agagttgtct tcctccctaa      2700
     ggcaggaaag tgcagccacg tgagtcccaa ggactacaga ccgataagcc ttacctcctt      2760
     tatactaaaa acactagaaa agctgttgga tttgcacatc aggaatgagg tagagggact      2820
     gatgtcaaca aaccaacacg cctacactaa agggaaatca gtggagacgg cactacactc      2880
     gctagtagcc accatcgaga gcgcccttca caacaaaaag tatgctttgg gagcatttgt      2940
     ggacatctca ggagcattca acaacgtggc cacaaccgca ataacaagtc gcctagaagc      3000
     gaataacata caccctgcaa tcaacgtctg gatcaaaaac ctcctaagtt gcagacgggt      3060
     gcaatcggag tggggcactg cttccatggt aaagggggca cacagaggca cacctcaggg      3120
     tggagtcctg tcgccactac tgtggaatct ggtggtcgac gacctcatca agagatttga      3180
     aaggaaggcc ccaaagataa cagcttatgc agatgacata agcatactta ttacgggtgt      3240
     atgtccatcg accctcagct ccttaatgga acgtacactc agggagatac gtgagtgggc      3300
     ggaagaggta ggactcagta tcaacgcgga caagacggac ctcatcctct ttaccaagag      3360
     gtacaaggta ccgatatgga cccccccgaa aattgaccaa actaggctga ccccaaaatc      3420
     acaggtgaaa tacctaggca cagtactgga cagcaagctg gcatggaggc ccaatgtagt      3480
     ggaaagggtg aagaaggcta ccattgcgct ttatgcatcc aagaagatgc tcagcagcac      3540
     atggggcctg tcacctgctc taatgcactg gatctacatc tcggtggtgc gaccaactct      3600
     gctgtatgga gccttagtgt ggtggcaggc tactgaaaag aagacatacc ataagcttat      3660
     ggagaagact cagcgacagg ctctgctctg tattacaggg gcgctgaggt caaccccaac      3720
     aaaagcactc gaaaccatac tcggaatcga ccccctggac attcacgctc gcctgattgc      3780
     gggaaaggca gcacaacgcc tcatagcatc aggaaatcta tcgccacaag gatacgggca      3840
     tagttcaatc ggcagggaaa tgaccagatc aactgactac atgacccccc aaacttgcct      3900
     tgacgtcaaa acaaccacat ctctgggacc tgaagactgg aagattggaa gggaccaaac      3960
     tgagcacctc aatatataca cagacggctc caagatggac ggaggagtag gagcgggcct      4020
     atactgcaca gaccccgaga taaggctgtc gtataagcta cccgacccat gcagcatatt      4080
     ccaggcagaa gtttttgcca tcgggaaagc agcggaggtc gctctcctca cagaacgagc      4140
     acacgatgcg gtcaacctat tcgtcgacag ccaagcggcg ataagatcca tgcagtcgtc      4200
     cgtggtcagt tccagaagtg tcttggcgag cagggaggca ttagacatcc taagcacgac      4260
     aaagacagtg cggatctatt gggttcccag ccaccagggc atcgaaggaa acgaagcggc      4320
     ggacgtacta gctaaggaag gcgtcgggct ggagaatagg agaaccgaga acgtgcctgt      4380
     ctccctcaga acgctgcaag gcgatctaga gaagcaggct agagcacaga ctgatagcag      4440
     gtggaggagt accaccacct gcagaacctc gaagataatg tgcaaggagc gcaacgagaa      4500
     acttagccac tacctactgc acctaccacg aaaggactgc agactgatgg tgggaatact      4560
     aacaggtcac tgtctggctg ctgcacatgc agcaaagcta ggcatcacca acagagacag      4620
     ttgcaggaaa tgtgaggaac ctggggctat cgaaaccctg gaacatctca tctgcaactg      4680
     tccggctctc tcaagggcaa ggaggagata cctgggcgcc ccagtgttgg catcactgga      4740
     agatgcctcc aaaaggacgc ctcaggaact gctggcctat gctaaaaaca cctcgattct      4800
     cggggacttt ttaaaaccac attaacactc ccgcgacggt tcatacaccc ccccccccca      4860
     tccggataac taagggccat attggcctat gcgcggcccc gctgagggcc gtccgggtta      4920
     acctaaccta accta                                                       4935
//
ID   LOA-2_DSer  repbase;    DNA;    INV; 4260 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4260
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2054-2054 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1129..4152
FT                 /product="LOA-2_DSer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MSLRVLQLNLHKSKVASAELLIAMEQGSADVALVQEP
FT                 WIASGNAVAGLKSSNYNAFYTPSVSRNRTAVLVRKGLQANLMSHYSSDDLT
FT                 VVLLESKKKRLLVASCYMAHDRPAPPEELRSLVEPGPKDQQLIVGADANAH
FT                 HSVWGSPDINDRGESLLDFILSTNLYIANVGEEHTFVGPTSSNVLDITLVA
FT                 GQSTMVSDWKVLERPSFSDHRYIQFQCEFDHSPKPTVFRNPRNTNWGKFQD
FT                 IISRKLATSPGTVKSDEDIEKSLETLSKELLGAYHASCPISRSKKRTRPPW
FT                 WNKDLSLQRDDLREFFKLAKQAKDDIINEEYKILLRNYKKEIRRAQRSSWR
FT                 NFCSNIETAPETARLRKLLSKQPTIQSQLKRDDGQWTEGSEEALTALMHGH
FT                 FPGCTKITNTHPAISFWIGNLLSCRRVQSDWGTASMVKGAHRGTPQGGVLS
FT                 PLLWNLVVDDLIRRFERKAPKITAYADDISIIITGVCPSTLSSIMESTLRE
FT                 ICEWTDKVGLSINADKTDLILFTKRYKVPPWIPPKINTTRLTPKTQVKYLG
FT                 TVLDSKLAWKPNVLERVKKATIALYASKKMLSSTWGLSPALMHWVYISVVR
FT                 PTLLYGVLVWWQAMEKRTYKKLMERTQRQALLCISGALRSTPTKALETIIG
FT                 IDPLDIHAQLTAGKAAQRLVALGSMSTKGYGHSSIGRTMSSVSDYMTPRTC
FT                 PDVKTSTFMGPEDWKTVQDHARYLNIYTDGSKMEGGVGAGIYCTDPETRLS
FT                 YKLPSHCSIFQAEVFAIRKAAELAQEIARPCEAVNLFVDSQAAIRSMQSSA
FT                 VSSKNVLASRDALDILSTTTSVRIYWVPSHQGIEGNEIADELAKEGVGLAI
FT                 DRTENVPVSLRTLQSELERRADVRAKSRWRGNSATCKTSKIMCKERNDKLS
FT                 HYVLHLSRKDCRLLVGXLTGHCLAAAHAVKLGITNNGNCRKCDESEATETL
FT                 EHLICKCPALTQARVKHLGAPVLASLADASKRSPGELLAFAKTTAILKDFN
FT                 TA"
XX
SQ   Sequence 4260 BP; 1238 A; 1127 C; 1139 G; 754 T; 2 other;
     tggctggcaa aaatcctcca gctgaaccct ccacgaggga gccggctggg caatgggcac        60
     tgtattaccc cgtacaatgg taatgcagtg gcgcatgctc tgtccggggt aatgcagtgt       120
     ctagctaagg cttcgattca atttctcccg cctaaacgcc atggttggag gtgcctggcg       180
     gcaggcataa aacgcaagtg ggtggttccc cggaaataaa caaatttttc acaggatgga       240
     gacaggagag gcaaccgggg ctgggatgtc agcccaaacg tcggtggaag gcgtgactgc       300
     taccaccggc gggcacggag gggagcaatc ctctctgcgt gtcgccagcg gtcacacctc       360
     tgatttgacg ggagcaggtc aagtcagttg taacgctact gccaaataac gacgaaaaga       420
     aggctaagcc gcacgggtgc cgttgtctat acagactcgg acctggagag cgtgcagctt       480
     tcgaaagagg aggaagaaag ccttcttcgc tcgccagaac caggcaccag ctccccgcgc       540
     agggacgggc cgaagcgttc aagcgagggg aagaaggcta aggcgcagta taaagctgcc       600
     cttcgaatcc agagccggct ccggacaaaa gctgccctat ccgaagagga gaaggtaaag       660
     ctcaactggc aggatcgagg agagcaggct gcacttcgcc aagcttccta gcatggcatc       720
     aacggccggt ttcgccaaca aggtggagga gatgcttgcc accaagcggc aacgctccgc       780
     cgagagtgcc ataaaggaca ctccggcgag caagcggcaa cgcgtgccca aggaagcagg       840
     cccccccttg aaggcgaaaa ccaaaaccag attaacaagg aggcagagga catcctgtat       900
     cccagatacg ggaagatggc atgggtagcg tatacctgcg cctcaaaaag cgccatcccg       960
     gggataagga tgaccacacc ctgaaggcag gcgaggtgga gaaggaccta ggtctggaaa      1020
     ccattgtcga cgccgcccag gaactaacgc tggatgagtc cgaagaggag gaagacggtg      1080
     acctgacgat agtagtcaac ccgtcgagtg gagttgagcc cggtacccat gtccctaagg      1140
     gtgctgcagc tcaatctcca taagagcaag gtcgcgtcgg cggaactcct cattgccatg      1200
     gagcaagggt ccgccgatgt agctctagtc caagagccat ggattgcctc gggcaatgcc      1260
     gtcgccggac taaaatcctc aaactacaac gcgttctaca caccatcggt aagcagaaac      1320
     agaaccgccg tactcgtacg gaagggtctt caagctaacc ttatgtctca ttacagctcg      1380
     gacgacctga ctgtggtgtt gctagaaagc aagaagaagc gcctactggt agcttcctgc      1440
     tacatggcac acgataggcc agctccaccg gaagaactca ggagcctggt agaacccggc      1500
     ccaaaggacc agcaactgat cgtgggtgca gacgccaatg cgcaccacag cgtatgggga      1560
     agccccgaca taaacgacag aggtgagtca cttttagact ttattctctc taccaattta      1620
     tatatagcaa acgtggggga ggaacacacc tttgtaggcc ccacctcgtc caacgtgcta      1680
     gatataacac tcgtagcggg acaaagtaca atggtatcag actggaaggt cctggagaga      1740
     ccatcctttt cagaccacag gtacatacag ttccaatgcg agttcgatca ctctccaaaa      1800
     ccaacagtct ttaggaaccc ccggaacact aactggggaa agtttcaaga tataatctct      1860
     cgtaaactcg cgactagtcc gggcacagta aaatccgatg aagacataga aaagtcctta      1920
     gagaccctct caaaggaatt actgggtgca tatcacgcat catgcccgat ttcaagaagc      1980
     aagaaaagga ccagaccacc ctggtggaac aaggacctct cgctccaacg cgatgacctc      2040
     agagaattct tcaaactcgc caagcaggcg aaggatgata taatcaacga ggaatacaaa      2100
     atcctgctaa ggaactacaa gaaggaaata cgcagggcac aaagaagctc ttggagaaac      2160
     ttctgctcca acatagagac ggccccagaa acggctagac tacggaagtt gctttcaaag      2220
     caacccacca tacagagtca gctcaaacgc gacgacgggc agtggactga gggcagcgaa      2280
     gaggccctaa cagcacttat gcacgggcac ttcccaggtt gcacaaagat cactaacacg      2340
     caccccgcca tcagcttttg gataggaaat ctactaagtt gccgacgggt acaatcggat      2400
     tggggcaccg cttccatggt gaaaggagcg cacagaggca cgccgcaagg cggagtccta      2460
     tcgcccctcc tatggaatct agtggtcgac gacctaatca gaaggttcga gaggaaggcc      2520
     ccgaagataa cagcctatgc tgacgacata agcataatta tcacgggagt atgtccatcg      2580
     acccttagct cgatcatgga atcaacactc agggagatat gtgagtggac ggacaaggta      2640
     ggactcagta tcaatgcgga taagacggac ctcattctct tcactaagag atacaaggta      2700
     ccgccatgga tccccccaaa aataaataca accaggctga ccccgaaaac acaagtcaaa      2760
     taccttggca ctgtactgga cagcaagctg gcatggaaac ccaatgtact agagagggtg      2820
     aaaaaggcca ccattgcgct atatgcatcc aagaagatgc tcagcagcac atggggcctc      2880
     tcacccgctc tgatgcactg ggtctacata tcggtggtgc gtccgactct gctatacggg      2940
     gtcttagtgt ggtggcaagc catggaaaag aggacctaca aaaagcttat ggagagaacc      3000
     cagcggcagg cactgctctg catatctggg gcgctgaggt caacccccac aaaagctcta      3060
     gagactataa ttggaattga tcccctggac atccacgcgc aactgaccgc gggaaaggct      3120
     gcacaacgcc tagtagcgct aggaagtatg tcgacaaaag gatacgggca cagctcaatt      3180
     ggtcgaacca tgagcagtgt atctgactac atgacgccta gaacttgccc kgatgtgaaa      3240
     acatcaacat tcatgggacc tgaagactgg aaaacggttc aggaccatgc tcgatacctc      3300
     aacatataca ctgacggctc caagatggaa ggaggagttg gagcgggcat atactgtaca      3360
     gaccccgaga cgaggctgtc gtataagcta ccaagccatt gcagcatatt ccaggcggaa      3420
     gtcttcgcca tcaggaaggc ggcagagctt gcgcaggaaa tagcccgccc atgtgaggcg      3480
     gtaaacctgt tcgtagacag tcaggcggcg attagatcca tgcaatcgtc agcggtcagt      3540
     tccaaaaatg tactggcaag cagggacgca ctagatatcc tgagcacgac aacgtcagtg      3600
     cggatctact gggttcccag ccaccagggc atagagggaa acgaaatcgc agacgaactt      3660
     gcaaaggaag gagtcggact ggctatcgat agaacagaaa acgtcccagt ctctctaaga      3720
     acgctccaaa gcgagttgga gaggcgggcg gacgtacgag caaaaagcag gtggagagga      3780
     aactctgcga cttgcaaaac atctaaaatc atgtgcaaag agcgcaatga caaactcagc      3840
     cactacgtac tgcatctatc ccgaaaagac tgcagactac tagtgggaat kcttacgggt      3900
     cactgcctgg ctgccgcgca tgcagtcaag ctgggcatca ccaacaacgg caactgcagg      3960
     aaatgcgatg aatctgaggc aaccgaaacc ttggagcatc tcatctgtaa gtgcccagcc      4020
     ctaacgcagg caagagtaaa gcacctaggt gccccagtac tggcatcact agcagatgcc      4080
     tccaagaggt cgccaggtga actacttgcc ttcgcaaaaa ctaccgcgat cctaaaggac      4140
     ttcaacaccg cgtaagattc tccaggtcca tgtgaaaaac aacatccgga taaataaggg      4200
     ccatactggc ctatgattgg ccccctcagg agggccgtcc ggttcaacct aacctaacct      4260
//
ID   Loa-2_DSuz  repbase;    DNA;    INV; 5114 BP.
XX
AC   .
XX
DT   09-JUL-2021 (Rel. 27.01, Created)
DT   09-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5114
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 592-592 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 5114 BP; 1519 A; 1366 C; 1259 G; 956 T; 14 other;
     ctcggctgag gaacttgtga gatggttcca aagtcgccta gctggggcaa ccgmgcgggt        60
     cgcaggttgc ggatagcgga cgacctctct cgaggccaac tgtgaatgag ctggtgggak       120
     aagtcaaaca cggwatcgtg gacgggaacc ccagtaaata aacagtcccg gacagccagc       180
     gggwattttg caacgaagca ataccgacga tgcgagttgt tcagccgcat ctaaatagtt       240
     gctttacaca aacccactcc caacacaaca cctacccatc tcccctccca aacaacatct       300
     cactccgggc cgaactacgg tgtaatacgg accgtgccaa gagtcagcct ggctgggggc       360
     ccggatcaaa aactagccca gtctcaaacg gtgtgctcag ggacatggcg acccctgttc       420
     taactatcgc cttacccggg catgcggatt ctgcccgggc ggacttttcc ccttctccgc       480
     aactcgtggg accaaattat ggaacataaa aagcaaacta acaacacaac acaaaacaca       540
     gagacgggaa ctcttaaaaa acccatggat aagctgaaca ctggttccac catccatacc       600
     agcacggtcc agaaagggcc gcatcccaaa ctggggatga cgggtggcag aaagccagcc       660
     gcaaacgcct ccgccacgag cgcatctgcg cctaaagcag cggtaggcac tgccaaggcg       720
     ctcgggccac ccgctggagc tcaaatacac atacgcagaa aggcggactg ccgcccagac       780
     tctgcgctca cacgctagga gcaccgttgc cacaccttcg cctaaatggc taaagaaggt       840
     agagtgggca aggaaggtgc ttccaaacta cgggcaggaa aagcccactc aagaagggac       900
     tcaggcgaaa aggcagcgat ccttcgaact acccgggcca tcggcgaaga gatctaagat       960
     ccagccatcg gtctccttcg ccgaaatcac gaagaaccgt gtactactcg gcctgattga      1020
     caggggaaat ccggagggca ggatccccag gaacaagtgg aaggcagtgg agtcccacct      1080
     ttccctcatt tgcctgcgca tggtacgaga gaagccaggc acctcgccct gctgcatgga      1140
     cgcgggctgg taccagggca gcgtcaaggt ggtggcctgc gacagtcagc ggtcggctga      1200
     catgtataaa caggcgacga gcaagctcgg cgaggtatac gaaggggcga acatcgttgc      1260
     gcttgactgg tgcgatgtcc ccagtagacc ccgagccagg atctggcttc cagcagcgat      1320
     caaggcgccg gaggacatcc tcttcatgtt gcaagaatgc aacccgcacc tccccacgaa      1380
     ggactggaaa gtcgtcaagg tggaggagca tgaaggggat gtcaaccagg cggtkttggt      1440
     cctgaacaag gagtcagttg ctccgatcga gactgctcga ggagtgctga acttcgggtt      1500
     cagtgcgata cacatcaagg tgtataaggg cgactccaac gccgctagca gctctgccgg      1560
     caacccagcc gagcaggtgc ttgctgagga gttggaggca cctggtgggc cggaggacgg      1620
     ctactctacc gattcgtcgc taagcagaga gatgcgagcg ctcggaccgg cwatcgagga      1680
     cgtagacctc agcgacacag aggaggccga cgtcactgtg gtggaggttg aagctgtaga      1740
     tgtcactaag acttctacaa ataaaccttc accacagtaa agcagcgtct gctgcacttc      1800
     tgcttcgcct gaccgaaggc ggagccgacc tagtcctcgt acaggaacct tgggtagtag      1860
     gaggcaaggt tgctggacta ggaacaaagg aatacaagct tatgcttgac cccaaagaag      1920
     gtaaaattcg aacctgcata ttagccaaaa ggcatcttag tatatttcta cttcgcaatt      1980
     acagcaacgg aggcaacacc gccaaaaact gggcagtccg agctcccttc ggaccatatg      2040
     tcatgaaatg awtcgccctt gccggtcagc ttcgctgacc ccagacgagc agactggcac      2100
     aggtacwaag aagttctgac aaatatcctc cccatggaac cgtcagaaag catcacaaac      2160
     ccacakgagc tggacgaaac agtatacaaa ttcacagagg catgcaacac tgccttcaaa      2220
     gtggcatgcc ccacagagaa accaagggga aggaaaaaac ccccctggtg gacccaacaa      2280
     ctatcwatcc tcagaaccaa ctgcagatgc ctgtttaaca gagcaaaggc gggaaatgag      2340
     gacaccaatt ggctgaacta caagtwtgaa ctagcctctt acaaaaaggc cattagaaga      2400
     gcaaaacgaa cggcatggca gaccttctgc tctgacatag aaaaaacaac tgatgccgca      2460
     aggctcagga aaatactctc taagacagcc gcgcctttgg gctatcttca aaaagcaaat      2520
     ggatcatggt cagactccag taaagagtcc ttggacctgc tcctagacgc tcacttcccg      2580
     gggagccaac aagcaggtca tcctcctgaa agaggagcag gagagggaat cgaawtagat      2640
     ccactcctat cagaccgcaa catgaaatgg tccattcata gtttcaaacc atacaaatcg      2700
     ccgggaccgg acgggataac accggctcac atccagcaag caggacaaat agccataaac      2760
     tggttgaaaa aaatcttcca atccatcctg gcggtaggag aactaccaac agcatggcaa      2820
     gaaacaaagg tggttttcat tcccaaggca gggaaggcca ctcacaccac agcaaaggat      2880
     tttaggccaa taagcctaac atcattcctg cttaagagct ttgaaagaat gataagccta      2940
     cacataaggg ccaccgtaga cccgacacaa atatcagaag cacagcacgc ttacaccaaa      3000
     ggtaagtcaa ccgaatcggc gctacacttg gtggtaagca gcatcgagaa atcactcagc      3060
     atcaaggaat acacactgat cgccttcctg gatatagagg gagccttcaa taacgtgctc      3120
     cccactgcta taacagaatc tctcacagaa ctaggggttg agccgccaat ggtgaggcta      3180
     atccataaat tgctgataag cagaatggtc acagccacac tagggacctc aacccagact      3240
     agactagtga acagaggcac cccgcaagga ggtgtactat cacccctctt gtggaatatc      3300
     gcagtaaata aactactgcg gaggaggagg ttgtaaggtc gtggcatacg cagacgacgt      3360
     cgccatcatc tttaatggaa aatatccaca aacactttgc gatcttatga ccgctaaact      3420
     taaaatacta tcggaatgga cgatagcgaa cggactcggg gtaaatccct cgaaaacgga      3480
     acttgttcta tttacaaata ggtacaaaat tccacaactt aacccaccca ttctaaacaa      3540
     ttgtaatctc tcctttagcg atcacgccag gtacttgggg ttagtactag ataagcgcct      3600
     caaatggggc ttaaacaacc aagagagaac caaaaaagcg accattgcac tttactcctg      3660
     taaaaaagca atcgggctaa gatggggcat gtccccwaga atagtcaact ggatatacac      3720
     agcggtagtc aagccaatcc tactgtacgg agtggctctg tggtggaccg ccttgcacaa      3780
     acaatgcata ctgactcctc taaacaaagt acagcgaatg gcggctttgt gtattagtgg      3840
     agcccttcga accaccccga atgaagcgct gaatgcgatc ttgaacctcc ctagcctgga      3900
     cttagcaggc atggaaaggg ccaaatcggc agctattcga ctgagggaca cagggcagtg      3960
     gaaagcccaa ttttatggcc atgctaaaat tctccagcat gataaatcga ttccgaagat      4020
     cacggatcta tgcaaatcca ttgaatatag tcacacaccc tttgaggccc tgattcctga      4080
     tagagaggaa tgggaacagg gccgaccggg cacgacggac gcaatctgtt tctatacaga      4140
     tggctccaaa ttagaaggac acgttggcgg aggtgtatac tccgaacaat tagatatcag      4200
     gaagtcattc aggctcccgg accactgtag cgtctttcag gcggaggtcc acgctataaa      4260
     agaagcacta acctgtttag ggaactttag cctccagaga ggacacctaa acatatatag      4320
     tgacagccaa gcggctatta agtcgatcta ctcgacaaac accaactccc gtacaatagc      4380
     agactgtcgc agatctctcc acgagatggc aaatcagttt actatcagcc taatatgggt      4440
     tccgggtcac cgggacatcg taggcaactg catagcggac gaattagcca ggcagggcac      4500
     caccaagcct ctcctcccag gagaggagaa tgtcggtatg cccatggcta cttgcaagct      4560
     aaacataaaa aaccacttca acacactagc caacacccat tggcaaaacg caccacagtg      4620
     tcgtatctct caccagacat ggcctgtgat aagcaacaaa aaaacctcgg agttactcaa      4680
     actcagccgc acagagtgtg gcatgttgat ccgagctctt acaggccact ggcttgttgg      4740
     cgcacatgcc ggcaggctaa aagccccgca aaatgatttc tgcagaagct gtagggatga      4800
     ggaagaagtg gaaacggtag aacaccttct ctgcttctgc ccagccctat gcagactcag      4860
     actgaaacac ttaggaagcc ccttcatcga cgatcttacc gaaatatcgg agattaatct      4920
     caaaagcata agtgccttta ttaaatcttc cgggtggaag acatgctgat cagcttaaca      4980
     caggctgaaa ctwctagaaa cgggacccta gagaaggaaa aaacgagatc atgcggtatc      5040
     acaacggacc cattgaggtc taagtgtgtc ggactatagt ccgacagccg ccctaaccta      5100
     acctaaccta acct                                                        5114
//
ID   Loa-2_DTa   repbase;    DNA;    INV; 5298 BP.
XX
AC   .
XX
DT   10-JUL-2012 (Rel. 17.08, Created)
DT   10-JUL-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5298
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1714-1714 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           437..1594
FT                 /product="Loa-2_DTa_1p"
FT                 /translation="MKPNTVASDLTGEVKPQTDSATIEEGPRTPSQGAPAP
FT                 MGTEGAAKTSTPLDNKNTNPHNSGTQPGTSKAATVTHQQRKAKVSRARFIL
FT                 GKIAKNEAEGKTDQRDAEDKTRCLAEIADFEEYMRTRPEATQANTKRDRSH
FT                 EASVSAPKRAKDAQGRPRPTSFVKKAKKFSDVARDSLAMALVDDLHDDGRL
FT                 LSEKWEEIEVKVADMIAERLSAVPDGPIPSFDSSDMVRGHRVIKCDDSFSR
FT                 SFLAECIAKIGNAWDGLSIRLVHAREIPRRPRARIWLPKEQTDQGKVLSLL
FT                 RAQNPEVHTEDWAILKVEKEMKTSQPFLFLINQRCLPQLEKADYTIRYGLR
FT                 KAKIKVFLAEPDDVLEEVDDTNKLLDDLVIDDKTPDVTPNTDA"
FT   CDS           1590..5177
FT                 /product="Loa-2_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase, and non-LTR RNase
FT                 HI."
FT                 /translation="MPKVVQINLKRSTHASANLAVLLSERNIDIGIVQEPW
FT                 TRDRQISGLTQQGYTLFYTNSTGRPRAGIIIKNNYNALLCPNLSTPDLAVA
FT                 RFVAADGTSMVIASSYMAHDEPAPPEPVIKLLQWAEDTKTTLVLGCDANAR
FT                 HTLWGSSETNERGESLFDNIICRNITICNRGNTPTFIFPSTREFQGWEEVL
FT                 DLTLQTEFSRYKVEKWIVSKQNSFSDHRYIFFEISIPISKPEPKRNPRRTN
FT                 WDKFGKIVYSKVSNRRIRVQTSTTTLDKEVEDLTNILNNAYKETCKVSYSK
FT                 KQHPLWWTKELCTLRKRARKAYNSSYATKEWEPYKEAQKAYKKAIYAAKKD
FT                 SWRTYCESLEGIKDSARLSKVLAKGYNSPTLLHKQDGSATTTVEESLETLV
FT                 DTHFPGNLREKPAPTEGQRAHQPTHTRDIITIERINWAINSFDKYKSPGPD
FT                 GIFPAMLQATQVSISRWLQAIYTACIRLTHIPLLWKEAKVVFIPKPGRRGH
FT                 ILAKDYRPISLTSFLMKTLERMIDIHIRENTEKQHLSDAQHAYRKGRSTET
FT                 ALHEVVCHIEKSLHFNQYTMATFLDIEGAFNNVNAESILSSLNSIGIEGDI
FT                 RAWIGVMLTSRTITAELSGTYLTRFVKRGTPQGGVLSPLLWLINMNDILRE
FT                 LNSGGVKVVAYADDVVLLVSGPFPDVISNIMTGALTRLNEWAKTCGLGINP
FT                 SKTELMLFTRRTKIPTYSKPKIDGIELELSGKAKYLGVILDPKLSWKLNIT
FT                 ERVRKASIAFYSCRKMFGKNWGIHPKIILWLYTAVVRPILTYGALVWWPAL
FT                 TRAYNITKLTRIQRSACAGATGALRSCPAAALNTILDIMPIELFIKDTAAQ
FT                 SAARLKASKCWKGYHTGHCRILEDSNYLAKNKTDYMTAEIRFGNGFTTTFP
FT                 TREDWENDRVTGQDEVSLYTDGSKMDCGVGAGIFAESWGIESKFHLPESAT
FT                 VFQAEVLAILEAAKLSIQQCLRNTKVRIYSDSQAAIKSLAAARTNSTLVAD
FT                 CKSALNILATNNHVQITWVPGHNDIPGNEKADELARMGSADDSYTTSLPES
FT                 LNTVQARIHEHYKTQASKSWSEKQGLRRSKLCWPTINSKRTRELITKSKRD
FT                 IRRITALITGHWAIGTQAMKMGLPYNANCRSCKETDTQETPEHMMCHCPAL
FT                 NHIRARYFGAYQLESLGEIGKQRITAILGFLNDAGWY"
XX
SQ   Sequence 5298 BP; 1635 A; 1313 C; 1347 G; 1003 T; 0 other;
     aaactacatc gggccgtcag ccgtcgggta cacaggggga ccaacggggg actcgtcccc        60
     tgccgtaact gtgtgcaccg atggtagtgc gactatactc tccccgtgag ggcggctgga       120
     agcaggtcca tagtctagct atgactatgg atgctgacga atcgtagtcg ggcggacctg       180
     ggtaggtctt taaagtgcct accctcaagt caggcgtgtc aagcgacccg tgcccactga       240
     ctttcaggtt cgcagctgag gggtaaatcc agctgtgttt taacggagcc ttcccagggc       300
     cgggcaaccc tgggtcggaa gtggccttgc cgtggctttg gggcggagtc acggtcgact       360
     ttttcataga gccccaacaa ccctcaggcc cgccgcgctt gcctggtcga gcaacgcggg       420
     cgatcatgta ctgaaaatga aacccaacac cgtagcttcg gacctcacgg gggaggttaa       480
     accccaaacc gattccgcta ccatcgagga agggccgcga acacccagcc agggtgctcc       540
     ggctccgatg ggaacggaag gggctgctaa gaccagcacc ccactagaca acaagaacac       600
     caacccacac aacagcggaa cccagccggg taccagcaag gcagccactg ttacgcatca       660
     gcagcgcaag gccaaggtca gtcgggcccg ttttattctc ggcaagattg ccaagaatga       720
     ggcagagggc aagactgacc agcgcgatgc ggaggacaag actcgatgcc ttgcggagat       780
     cgcagacttc gaggaataca tgaggacgcg cccggaggcc actcaagcca acacaaaaag       840
     ggaccgctcg cacgaggcaa gcgtgagcgc acccaaacgg gcaaaggacg ctcaggggag       900
     gccaagaccg acctcctttg tgaagaaggc caagaaattc agcgacgtag ccagagacag       960
     cctcgcgatg gcactggtgg acgacctgca cgacgacgga cgcctgctgt cggagaagtg      1020
     ggaggagatc gaggtcaagg tggccgacat gatagctgaa aggctatcag ccgtgccaga      1080
     tggtccgatc ccctccttcg actcgtcgga catggtcagg gggcaccggg tgatcaagtg      1140
     cgatgactcg ttctcgaggt ccttcctggc ggaatgcata gccaagattg gaaatgcatg      1200
     ggacggcctt agcattaggc tcgtccacgc cagggagatt ccaaggaggc cgcgggctcg      1260
     catttggttg ccaaaggagc agactgacca aggaaaggtg ctgtcgctgc tgagggctca      1320
     gaacccagaa gtgcacacag aggactgggc gatacttaaa gtagagaagg agatgaagac      1380
     gagccagccg ttcctcttcc tcatcaacca gcgctgcctg ccgcagcttg agaaggccga      1440
     ctacaccatc cggtacggcc tacggaaggc caagatcaag gtcttcctgg cagagccgga      1500
     tgatgttctc gaggaggtcg atgacaccaa caagctgttg gatgacctgg tcatcgacga      1560
     caagacccca gacgtaacac ccaacaccga tgcctaaagt cgtgcagatt aacctgaagc      1620
     gcagcacgca tgcttcagcc aatcttgcag ttcttctcag tgagaggaac attgacatag      1680
     gcatcgttca agaaccatgg actcgagaca gacaaatctc gggtctaaca caacaaggat      1740
     atacactctt ttatactaac tcgacaggta ggccgagagc aggtattatt ataaagaata      1800
     actataacgc acttctatgc cccaatctta gcacaccgga tctagcagtt gccagattcg      1860
     tggcggcgga tgggacatcg atggtgatag cctcatccta catggcccat gatgaaccgg      1920
     ctccacctga gccagtcatc aagctgctgc aatgggcgga agatactaag acgaccctgg      1980
     tgctcggatg cgacgctaac gcgaggcaca cactatgggg aagctcggaa accaacgaaa      2040
     ggggtgagtc tctttttgat aatattatct gccgcaacat caccatatgt aatagaggta      2100
     acacacccac ctttatattc ccaagcacta gggaatttca gggatgggaa gaggtgttag      2160
     acctcacttt acagacagaa tttagtagat ataaggttga aaagtggata gtgtcgaaac      2220
     aaaattcctt ttcagatcac aggtacattt tcttcgaaat ttcgattccg attagcaaac      2280
     cggaaccgaa acgtaacccc cgtagaacaa actgggacaa attcggtaag attgtctact      2340
     cgaaagttag caacagaaga atacgggtac aaacctctac gacgaccctg gacaaggaag      2400
     tagaggacct aacaaacatt ctaaacaatg catataagga aacatgcaag gtttcatact      2460
     ctaagaaaca acacccttta tggtggacca aagagctttg cactctgaga aagagggcaa      2520
     gaaaagccta taactccagc tatgctacca aggaatggga gccatacaaa gaagcacaaa      2580
     aagcatacaa aaaagcgata tacgcagcca agaaagactc ttggaggact tactgcgaat      2640
     cgctcgaagg tataaaagac tcggctagac taagcaaggt ccttgctaaa gggtataaca      2700
     gcccaactct attacacaaa caagacggat cagcgactac aacagtggaa gaatccctag      2760
     agacactagt ggatacacac tttccaggca accttcgaga aaagccagca cctactgaag      2820
     gtcagagggc tcatcaacca acacacacaa gggatatcat aaccattgaa agaatcaact      2880
     gggcgataaa ctctttcgat aaatataaga gtccggggcc agacggcatt ttcccggcaa      2940
     tgcttcaagc aacacaggtc agcatcagta ggtggctgca agccatttac acggcttgca      3000
     tcagactaac acacataccg cttctatgga aggaagccaa agttgtattt ataccaaaac      3060
     caggaagaag aggtcatatc ctagcaaagg attacaggcc gatcagcctt acctccttcc      3120
     taatgaaaac gctggaacga atgatcgata ttcatatccg ggaaaacacc gagaagcagc      3180
     atctatcgga cgctcagcat gcgtaccgaa agggcagatc gacagaaacg gcactacacg      3240
     aagtagtctg ccacatagaa aaatcgctac attttaacca atatacaatg gccaccttct      3300
     tagatataga aggtgcgttc aataatgtaa acgccgaatc catactgagc tccctcaact      3360
     cgatcggcat tgaaggagac atcagagctt ggatcggagt tatgctcacg agcaggacga      3420
     taacagccga actgagtggc acttacctca cacgctttgt gaagagaggc acacctcagg      3480
     gcggggttct atcgccactg ctctggctta tcaacatgaa cgacatattg agagaactca      3540
     atagcggagg agtaaaagta gtagcctacg cagacgacgt agtgttgcta gtatcaggac      3600
     cattcccaga tgtcattagt aacataatga cgggggccct tacccgactc aatgaatggg      3660
     caaaaacctg cggactaggt ataaacccga gtaaaaccga actgatgctc ttcacgcgaa      3720
     gaacaaagat cccaacatac agcaaaccaa aaatagatgg aatcgaactc gagctatcgg      3780
     gtaaagctaa gtatctagga gtgatactag acccgaagct ctcgtggaaa ctgaacatca      3840
     cggaacgagt aagaaaggcc agcatagcat tctactcgtg caggaaaatg ttcggcaaaa      3900
     actggggtat acaccctaag ataatattat ggctttacac agcagtggta aggccaattc      3960
     tcacatacgg ggcactagtc tggtggccag ccctgacaag agcatacaat attaccaagc      4020
     tgacaagaat acagagatca gcttgcgcag gagctacagg ggcattaaga tcatgcccgg      4080
     ctgccgcgtt gaacactatt ctggatataa tgcctataga acttttcata aaggatacgg      4140
     cagcgcagag tgcggccaga ctgaaggcaa gtaaatgctg gaaaggctac cacacagggc      4200
     actgccgtat cttagaggac agcaactatc tggcaaagaa caaaacggat tatatgacag      4260
     cggagataag atttggaaac ggatttacga ctacctttcc aacgagggaa gactgggaga      4320
     atgacagagt aaccggacaa gatgaggtat cactctacac tgacggctcc aagatggact      4380
     gtggtgtagg ggctggaatt ttcgctgaaa gctgggggat agaatcgaaa ttccacctcc      4440
     cagaatcagc gacagttttt caggctgagg tacttgctat tttagaagca gccaagcttt      4500
     cgattcagca atgcctcagg aataccaagg tacggatata ctctgatagc caagcggcta      4560
     tcaaatctct cgcagcagca agaaccaact cgacactagt agccgattgc aagtcggctc      4620
     ttaacatact agcaacaaac aaccatgtac agataacatg ggtgccaggg cacaatgata      4680
     taccaggaaa cgaaaaggcg gatgaacttg cacgaatggg gtcggcagac gactcctata      4740
     caactagtct acctgaatcc ctaaatacag tccaagcaag gattcacgaa cactacaaaa      4800
     cacaagctag taaaagttgg tcggaaaagc agggtctcag gagatcaaag ctctgctggc      4860
     caaccatcaa tagcaagaga actcgagagc taataaccaa aagcaaaagg gatattagaa      4920
     ggatcacggc actcatcaca ggccattggg ccattggcac gcaagccatg aagatggggc      4980
     ttccgtacaa cgctaattgc agaagctgca aagaaacaga cacacaggag acacctgagc      5040
     acatgatgtg tcattgccca gcactaaacc atatcagggc gagatacttc ggggcgtatc      5100
     agctggaatc attgggagaa ataggaaagc agaggataac tgcaatccta ggttttctaa      5160
     atgacgcagg ctggtactga agagaacgcg gagacaacaa tttacgaggg tgtggatcaa      5220
     aacggagctc agctctactt ggaggtcctc agagaggacc tcaccacttc tacctaccta      5280
     cctaatctac aacgatta                                                    5298
//
ID   LOA-2_DYa   repbase;    DNA;    INV; 3890 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3890
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1933-1933 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~94% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(736..1506,1457..2539,2739..3080,3071..3814)
FT                 /product="LOA-2_DYa_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="QSTRRMEMSPVPMPLRVLQLNLHKSKVASAELLIALE
FT                 QGSADIALVQEPWIASGNAVAGLKSSNYNLFYTPSVSRNRAAVLVRKGLHA
FT                 NLMSHYSTDDLTVVMLESERNRLLVASCYMAHDRTAPPEELRSMVEASPND
FT                 QQLIVGADANAHHCVWGSPDINDRGESLLNFLLSTNLCIANVGEEHTFVGP
FT                 TSSNVLDLTLVRGQSAMVSEWRVLRDHLSQIISTYNSYANSNTLPNQPLLE
FT                 DNLDTTRDWPGPSKIRKTILTRLATGPGLVKSAEDIEKSLETLSRELLDAQ
FT                 RAACPTSRARKRTRPPWWNGNLSLLRNNLREFFKIAKDANNDIINGEYKIL
FT                 LRDYKKEIRRAQRSSWRNFCSKIETAPETARLRKLLSKQPTIQSQLKRXDG
FT                 QWTEGSEEALTALMHAHFPGCTEISDANKHQDLVTGEEHLPTDLISSRRIQ
FT                 WAIDSFAGIKAPGLDGIFPAMLQVTKEVITPWLHAIFTACLSTGYIPIQWR
FT                 TSRIVFLPKAGKCSHMSPKDYRPISLTSFLLKTLEKLLDVYIRNDAGRLLS
FT                 SNQHAYTKGKSVETALHSLVATIEKALHNQEYALGVFVDISGAFNNVTTDA
FT                 IMDRLEAANTPPAIKDNSLCPRRHKSSTLESGXRQQADXEAQXTREGKKAT
FT                 IALYASKKMLSSXWGLSPALTHWVYIRWXIQLXRWSLSVVEXMERKTYDKL
FT                 MERTQRQALLXITGALGSTPTKALETIVELIPVDPLDIXAQMIAGKAAQRL
FT                 VASGNMXLQGLGHSSIGRDMSSISDYIVTRMCPDVRTTTXMGPDDWKTGQD
FT                 HAQHXNIYADGSKMEGGVGAGIYCTDPEMRLXYRLPSQCSIFQAEVFAIGK
FT                 AAELGLSIDRPHEAVNLFVDSQAAIRSKQSSAVSFKSVLASREAQDILSTT
FT                 KSVRIYWVSSHQGIDGNETADELGKEGVGLANKRSENVPVGRADARAKSRW
FT                 RRTSTTRKISKIMFKERDVKLSHSH"
XX
SQ   Sequence 3890 BP; 1117 A; 1007 C; 1039 G; 707 T; 20 other;
     aggacgcacc ggggagcaag cggcgacgcg ggccggagga ggcaggccct cccccccaga        60
     aagcgaagaa gcccgagaag aggcttaaag tcagtgaggc gaccaaacga cacttgatcg       120
     tggcactcat cgacagaagc gatgaagccg gcaagatgac cgagccgcgg tggaagttgg       180
     tgcatgcgcg actcgttgag tcattgtttg cacggatgga ggaagctcct gaggccccca       240
     tgcccacttt tgatggtgcc gggtggctga acggggtcaa aatcccaagt gcatggatga       300
     cccgacgaga aagtggctga cgcaaacggt ctgccaattg gaggcgttgt gggagggggc       360
     ccagctggag gtggtggaca gggagctaat cccgtccatt cctaaggcga aggttctctt       420
     tcccatcgca atccaagggg accgggcgct gaagctctgc agcggcagaa tccatcaccc       480
     aaggaggggg gccagaggca gtcctccaga taaataagga ggcggaggac atcctmtatc       540
     caaggtacgg gaagatggcg tggggcatgg ggagcgtgta cctgcgcctc aaaaaacgcc       600
     atcccgggga taaggatgct cacaccctga aggcaggcga ggtggagaag gacctaggtc       660
     tggaaaccat cgcggaagcc gcccagggac tttcgctagg cgagacggat gatgaggacg       720
     gagacctgac gttgacagtc aacccgtcga atggagatga gcccagtacc catgccactg       780
     agggtgctgc agctcaatct tcataaaagc aaggtcgcgt cggcggaact cctcatcgcc       840
     ctggagcaag ggtccgccga catagctttg gtccaagagc catggattgc ctcgggcaat       900
     gccgtcgccg gactaaagtc ctccaattac aacctcttct acacaccatc ggtaagcaga       960
     aacagagccg ccgtacttgt gcggaagggc ctgcatgcta accttatgtc tcattacagc      1020
     acggatgacc tgactgttgt gatgctggag agcgagagga atcgcctttt ggtagcttcc      1080
     tgctacatgg cacatgacag aacggcccca ccggaggaac tcaggagcat ggtggaagcc      1140
     agcccgaacg accaacaact gatcgtgggt gcagacgcca acgcgcatca ctgcgtatgg      1200
     ggtagccccg acatcaacga cagaggtgag tcactcctaa actttttact atcaaccaac      1260
     ctatgcatag ctaacgtggg ggaagagcac acctttgtag gccccacctc ctcgaacgtg      1320
     ctagacctaa cactcgtaag gggacaaagt gctatggttt cagaatggag agtccttaga      1380
     gaccatcttt ctcagatcat aagtacatac aattcctatg cgaattcgaa cactctccca      1440
     aaccaacctc ttttagaaga caatcttgac acgactcgcg actggcccgg gcctagtaaa      1500
     atccgctgaa gacatagaaa agtccctaga gaccctctcc agggaattgt tagatgcgca      1560
     acgcgcagca tgcccgacat ctagagccag gaagaggacc aggccaccct ggtggaatgg      1620
     taatctttcg cttctacgca ataacctccg agaatttttc aaaatcgcca aagacgcgaa      1680
     taatgatata atcaacgggg aatacaagat cctactcagg gattacaaga aggaaatacg      1740
     cagggcacaa agaagctcgt ggagaaactt ctgctccaaa atcgagacgg ccccagaaac      1800
     ggctagactc aggaagctgc tatcgaagca gccaaccata cagagtcagc tcaaacgcga      1860
     kgacggacag tggactgagg gcagcgaaga ggccctaaca gcactaatgc atgctcactt      1920
     cccaggatgt accgagatat ccgatgccaa caagcaccag gacctcgtaa ctggagaaga      1980
     gcatctccca acagatctaa tatcctctag aagaatccaa tgggctatag actcctttgc      2040
     gggaataaaa gcaccgggac tagatggaat atttccagcc atgctacagg tgaccaaaga      2100
     agtgatcacc ccatggctac acgctatatt cacagcttgc ctaagcacgg gctatatccc      2160
     tatccaatgg aggacctcta ggattgtctt cctgccaaaa gcagggaagt gcagccatat      2220
     gagccccaag gattacaggc cgattagtct cacctctttc ttactcaaga cgctagaaaa      2280
     gctgctggac gtatacatca gaaatgatgc aggacgacta ctgtcatcca accagcatgc      2340
     ttacacgaaa ggtaaatcag tggagacggc actacactca ttagtagcca ccattgagaa      2400
     agccctgcat aaccaagaat atgctctcgg agtgtttgtg gatatatccg gagcattcaa      2460
     caacgtgacc acagacgcta ttatggaccg cctagaagcg gccaacacgc cccccgctat      2520
     caaagataac agcttatgct gacgacataa gcawaattat cacgggagtc tgtccatcga      2580
     cactcagctc gattatggaa tcaacgctca gggagatcgt gagtgggcga agagggtagg      2640
     actcaccata aacgcggaca cgacggacct cattctcttc accaagagat acaaggtgcc      2700
     gctatgggtc ccctcgaaga ttaactcatc caggctaacc ccgaagacac aagtcaagta      2760
     ccttggaatc tggtgktaga cagcaagctg acmtggaagc ccaakgkact mgagagggta      2820
     aaaaggccac catagcgcta tatgcatcca agaagatgct tagcagcwca tggggcctct      2880
     cacccgctct gacgcactgg gtttacatcc ggtggwgcat ccaactctka cgctggagtc      2940
     ttagtgtggt ggagkccatg gaaaggaaga cctacgacaa gctcatggag agaacccagc      3000
     ggcaggcact gctctgsatw acaggggcgc tggggtcaac scccacaaaa gcactcgaaa      3060
     ctatagttga gttgatcccc tagacatcca mgcgcaaatg atcgcaggaa aggctgcaca      3120
     acgcctagtt gcatcaggga atatgtmtct acagggactc gggcacagtt caattggtcg      3180
     agacatgagc agcatatctg actacatagt caccagaatg tgcccggatg taagaacaac      3240
     gacattmatg ggaccagacg actggaaaac gggtcaggac catgcccaac acmtcaatat      3300
     atacgcggac ggctccaaga tggaaggagg agttggagcg ggcatatact gtacagaccc      3360
     tgaaatgagg ctgtmgtata ggctaccaag ccaatgcagc atattccagg cggaagtatt      3420
     cgccataggg aaagcagcag agcttgggct gagcattgac cgcccacatg aagcggtcaa      3480
     cttgttcgta gacagtcaag cggcgataag atccaagcaa tcgtcagcgg tcagtttcaa      3540
     aagtgtactg gcaagcaggg aggcacaaga tatcctcagc acaaccaagt cagtgcggat      3600
     ctactgggtt tccagccacc agggcatcga tggtaatgag acggcagacg aactaggaaa      3660
     ggaaggcgtt ggactggcga ataaaagatc agaaaacgtt cctgtcgggc gggcagacgc      3720
     acgagccaaa agcagatgga gaagaacttc caccacccgc aaaatttcaa aaatcatgtt      3780
     caaagagcgc gacgtaaaac tcagtcacag tcactaaaac tcgtgctgca tcttccaagg      3840
     aaagactgca gactgctagt gggaattctc acaggtcact gcctagctgc                 3890
//
ID   LOA-2_FoCa  repbase;    DNA;    INV; 4913 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4913
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2719-2719 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 4913 BP; 1320 A; 1034 C; 1417 G; 1136 T; 6 other;
     ctcttgcggg gaactcgaac stgagaacac gtagtgattt gtgctcagtg ctcaaatatt        60
     tggaaaattc gggaaacctg ggaatttaaa ggtaagacac accccccaca gtcaccacat       120
     atgtgggagg ctgtggggag agtgggagta gcagtggtgg ggggtgggag gctgtgtgga       180
     aggaactttt gtgtggtttt tatgggagtg ttgttgggac gtggatgggg gcgtttctcc       240
     aacccttcac gttgccacca ctcccacctc cagtcgccgc cggggtcacc accaccacca       300
     ctgttgctcc tacttacata aatacatatg taggaatata tggaatttct gctggggatg       360
     tgactcctgc agaaaaatga atgtgaaacc acaaaacacc accaaccaga accacgaggt       420
     ggggaactgg ttggtggtgt aatgtggtcg taattattta tgaagagaga gagggggatg       480
     ctttagtgca tcacctctca atcctgacga ctttctctca tcgtgatttt ctctttcaga       540
     tggagaagga tcaactgtga aagagagaga ggaggaggaa aaactttgag agaggacgag       600
     gaggagatgg aactcggtga caacagggac actggacctg ggaacaccga ggaaccacca       660
     atccctgcaa aaaaaccctc cggcgcggcg aaaaggaggc gggcgaggga gaggaaggct       720
     gccagggcgg cgggcgaagg cggacagggg gagggggctg taatggcacc accaccaccg       780
     ccgggcgacc aacaccatcg tcgtcggcga cgccaaccac aaggtcagcc cactcctttc       840
     caaatcctca aggtgggaag attaaaccca gggtgctggc taaaaccaca tccagggtcg       900
     aagccttgtc tcttgagaca cccaggggcc caaaaaggca acgggggact cctgagtcgg       960
     gcaatacccg gccccggaag cgggtgggtg gagacatccg accactccct gaagaggcga      1020
     acctggtatt ctgcgcatac caggacgaaa cgaagggaag attctccaac gtggacttca      1080
     ctcgtgtgat gaatgccttc cgatcggcaa tagatgagct gaaaggctca ctacttgtcc      1140
     gcatcggagg cattaagatg aagaacggag tcgtggaggt ggaatgccat gatgaggcaa      1200
     cgaagctgtg ggtggagggt attgtgggga acatcttgga tggaaccctc aggaccatca      1260
     ctcacgaaca ggcccgatct cgtgcaccac agagaactgt gggggtgtgg gtgagggaga      1320
     ggacggcccc gcaaccggga aaattcttca catctttgtc gacgcagaat ggggggctag      1380
     atacctctag gtggtgcatt cgttatgcaa atcctagtag ggggggtcac tttctgctca      1440
     tcgggatgga tgaagagagc catagtcgga ttcaagatcc ggcgaaaata tactactacc      1500
     atgacctact tactttcacc ttcgaacctc cccctcctaa gggggtggtc ccggagggag      1560
     caggtaagta gggcgtggta ggtggtgtag tagtactttt tcttgtaaat agcgtttaaa      1620
     aaggtttaaa taaatatttt tgtttactcc tcagttctgt tggtggatat tacttatttt      1680
     atccagtctc ataaatatat atatattgtt cattaaggac tatgaatcga agtaaaactc      1740
     attctttagt tcagatcaac ttgcaccatt ccaaagcggc ctcggctaat ctatgccggg      1800
     tgctwtttgg taaggggcac acaggcatat gcctcattca agaaccttat gcatacaagg      1860
     gcaaagtgag gggtcttaat gaggtaggaa acttgtttgc gtgtggggac tcagagagaa      1920
     cccaagatca tgcattctac aagtaaaaat gtcaaagcat cgcttatgca ggaattttgt      1980
     gggagagacc ttgtgtcaat taccacgaat ggcggcatgg agtgattgtg tatgcttcgg      2040
     tgtatatgcc gggcgaggag gagtgtcccc ctagaggagt ggtggagctg gtacagcatt      2100
     gtaggaacaa taacttgtta ttggtacttg gctgtgacag caacgcacac cacactctat      2160
     ggggtagctc agatattaac gcaaggggga gaagttgtgt gaattcataa cggagcatga      2220
     catttgttgt ataaacaggg gtcataaacc aacgtttgtg gtttcgaata ggcaggaggt      2280
     actagacgta actcttgtct cttcgggggt acttcctttg gtgaggaact ggagggggcg      2340
     ggccaccgga accaatgtat tatcggaaca aaaagaaaac gaattgggag ctctacgcgg      2400
     agcaagtgaa accgaaattg agcactatgg ccggcatgga gatttcctcc acggaggaaa      2460
     tagacatgca ggtcgatagg atmgttcggg ttctgaaaga ggggtttgac gtagcttgcc      2520
     ctctgaaact agttaaacca cggaaacgcg taattccktg gtggtctcgg gaattggacc      2580
     ttctacggaa ggcatcgcgt gtacaatgga aggtgtacat gggggataaa aatagggact      2640
     cgtgggaggc ttactgcgcc gtcaggaaca gatacacgtc tgcactccgg acggcaaaga      2700
     gggactcttg gagaacctwt tgtggggaaa ttgaatccac gcatgaaaca tctcggctac      2760
     atcgtgtact gaaaaatgac caggtcaatc gactcgggcg cattcaggac gcgaatggtg      2820
     ggtataccgt ggatgtgaaa caatcattgc aacttctgct tgagaaacat tacccaccgg      2880
     acccgaaagg ggatcaacgg ggaatgtctc aagcagtaga aaccactgcg gggatcgaca      2940
     attatgtcaa cccggagctg gtggaaaagg ccatcaagtc atttggtcct tataaggctg      3000
     cgggagtgga tgaggtgttt ccccgaatgc tccaagtggt cagcggaagt gtgagtggac      3060
     ctcttgctac ggtgatgagg gcctgcttgc actatggcta cactccgagg gcgtggaggg      3120
     agactaaggt catctttcta ccaaagccag ggaaggatag ttacgagagg gctaacagtt      3180
     ggagacccat ctcgttaact tccttctttc tcaaaacatt tgaacgtctg attgactggc      3240
     acatcaggac tcccgaactw atagggggac tgatggacaa caaccagtac gcgtatatga      3300
     aaggtaggtc aacggaatcc gcaatgcacc aaatcgttgc aagagctgaa ggaaccctga      3360
     ggacacgtga gcacgcaatt gttgtgttca tggacattcg gggggcgttc agtgatgcaa      3420
     cggttcggtc cattgaggat ggtatgtaca ggaataaggt cgatccggtg tgtgcaaggt      3480
     taatctcgca catgcttaga aaccgggtgg tgcgtacggc atctcacggg ttaagcagag      3540
     tggcggaaag gggctgccca caaggtggcg tactttctcc cctgctctgg aacctagtgg      3600
     tggatgaggt actcaagaaa ttgaggaact ctttaccaca ggtgtactca aacggctatg      3660
     ccgatgatat aagtactttg agtcgcggac tggatctggg gacagtggta caggatgctc      3720
     agcggagcat caatatagtg aataggtgga gtcagcaagt agacctcggc gttgagggcg      3780
     acaaggtggc tgccattcta ctcacgagca agcgggtagg gggcgaagct ttacttagta      3840
     ttgctggaaa acctattccg tttactaaat ctgcaaaata tcttggggtc acaattgaca      3900
     acaagctatc ttggaaacca cattgtacgg acagggctac caagggtatg atggccctgg      3960
     ctgtctgtaa aagggcgatt ggacccactt ggggacttag accttctaca gtgatgtgga      4020
     tgtataaaac cattgtccga ccgacaatgg agtatggagc agtggtgtgg tgtagtgctt      4080
     cgaaagtcaa atgccatatg aaactcctgg atagggtaca gagggtggca atgctgtcga      4140
     cctctggaac catgaggagt actccctctg cgagtttgga gtgtctattc gggcttgaac      4200
     cgatggacat tcggattcaa agagtcgcac tttcaacaat gtatcgtttg caagtgaaca      4260
     accaatggtt gggatggtat gggaggggat tcaaagggcc tatgtcacac atggaccttt      4320
     gcaataacct ctctagtaaa gtaaccgttt gcgggcctgg gaaatcggac cgtaaaaagg      4380
     cctgtagaga gtgggctgaa caagcacaca aatctaggtg gcaggacact catctgtgta      4440
     agcagaccaa actctttctt aaggagccat accaggcaaa cttggggaac attgtaaaat      4500
     taaaccgtaa ttcactgcgc caactggttc aggtaataac ggggcataat actttgaact      4560
     cacatctgta taatttgaac ctggtgtcgt cccctggctg cttatgcgga caggggaagg      4620
     aaacagggta tcactttatt acagagtgtg attgttttgc gatgaccaga ctggtagtac      4680
     tcgaagggct ttatctgacc tccgaggaat tacttgaaat gccgtttgcc aggttagcaa      4740
     ggtttattgc taagtctgga agatttttaa acgatcgcga atggcagaat tcgcaatatt      4800
     aaacgcaagt gtccttaggg gagtcggcaa ttagccttaa atgcgctacc gccgctggcc      4860
     tggctgtctc tattaatgag tagtctggtc accccacata gtacatacat aca             4913
//
ID   Loa-2_RPr   repbase;    DNA;    INV; 5009 BP.
XX
AC   .
XX
DT   11-MAR-2013 (Rel. 20.10, Created)
DT   11-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   LOA-type non-LTR retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5009
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3476-3476 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1285
FT                 /product="Loa-2_RPr_1p"
FT                 /translation="MSDAEVHAARISGSSKKRVMALTREGRNYVEAKRQVI
FT                 RENFNRWAQQTSKAAKRPRSEGESPQQWQPAKKVKARAGEKSYSEALSFVK
FT                 VAIVQEGYPEAQLAPERLTAIQQAVLKEYDQIPKGSMQVRLAKCMYRPGFV
FT                 LATCADQFSAEWLRDIVPKLRPWDGARLLPLLGDDIPRPETAVVFIPDEHG
FT                 SRVEADIVLKRLEVGNQKLCTDNWKVWGCKPVEGGQVWTFSMDRASLDELR
FT                 RLKMSPFFGWGQVKFRVKSSKYQGPEEAKTSTEEEGLMLEATDPVIESTPG
FT                 GQSGLEGEMEALRAALSELPAGVGYPKGERVEAMEVSVGELPGGSGPLPQR
FT                 PSGQEQESGSAETRGGAAGTRDVAPPTLDA"
FT   CDS           1290..4919
FT                 /product="Loa-2_RPr_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MVLKVVQANLHHAKAASAVVCRRFDSEGLDLALLQEP
FT                 WYHGGFVRGLNPKLGKTLYSKSASRPRACIVLKYGIGCTLIPELCSGDFVT
FT                 ALLNIITEGGPRKLVVCSAYFPGDEDCLPSLLGDIVAHCRRERLQLILGCD
FT                 ANAHNTAWGSTDDNARGKLLLEFISGEGLHVSNIGSVPTFVTATRREVLDL
FT                 TLATRCMSNTVVNWHVSNEPSCSDHRHIRFDICVPPLVIKRLRSPRETHWA
FT                 GFXRALTESLXSFKVDVRRTESIEQAVVHINEAILEAYQDNCPEKIRPQRS
FT                 KTVWWNSHLEKRRKEVRRLFNKAKHNQDWDSYRQALTQYNKEIRKAKRSAW
FT                 RSFCEDIKXTPECARIHRVLAKEGTAGRVGFXAKXDGTYTKSMEETLELLL
FT                 SAHFPGSTRLSASGXEEVXSEVPKRPSRADWKIATHIVQPNRLRWAIARFQ
FT                 PFKSPGPDGIYPAFLQKAGEVLMPFLCRILRGCLAWRFIPEAWQRVKVVFL
FT                 PKVGRLGDQAPQSFRPISLSSFLLKTLERLLDRHIRDEILGIQPLSDRQYA
FT                 YQAGKSVDLALDDFNRLLQKSQEDKEFAMAAFLDIQGAFNNVSXMSLIDAL
FT                 SRRGLAPTICQWIKSNLLGRTVMATLDNCSVEVRVARGCPQGGVLSPLLWT
FT                 ILVDDLLVKMTAESFYCLGFADDLAVVVKGRFAYTVSERXQRALNIVDRWS
FT                 RAEGLSINPHKTRVVPFTRRKNLGGLXQPILGGVTIPLSMEAKYLGVIFDK
FT                 RLTWNSHLNMISHKAKVSLGCCKRLCGKSWGLSPKMTLWIYKSVVRPMVSH
FT                 GAVAWWAKTLQVGGVRALSGIQRLACLSVTGAMRTSPTAALEVLLNLPPLH
FT                 IYIQGVARAVVVRLMEGQAPITVRHGGAYQELYEELEADPILGLPSDSMTP
FT                 KYNFDKPFKVCIGDREAWRRGPPVVGDSMWYTDGSKMEEGVGAGVYGVKPK
FT                 CSFSVSLGKLATVFQAELAAIRFCATEIEGRGIINSKVVIFSDSQAALRAI
FT                 SSYQVNSRLVWDCLGALKEISDQNKVFLVWVPGHSGHKGNEAADLLAREGS
FT                 AGHFVGPEPCFGVPKCVKTAAINLWVQSRSQEWWLATTGQRQAKEFIKGYS
FT                 PRLTAELIRQGRGAIRMIVGLLTGHCRLRKHMHRMGLADDSLCRFCQEEEE
FT                 TALHVLCQCEGLVWLRMLLLGEEKPRPESFTQESLSXIKSLIKRTGLEGEL
FT                 "
XX
SQ   Sequence 5009 BP; 1259 A; 1081 C; 1521 G; 1124 T; 24 other;
     ggctggtaca agtggggaag caaaacccag caaaggccaa gggaagggga tgggtaatcc        60
     tccaaccaaa atggccggca taattaaacc taagacacct gasgccctag ggcgggagtg       120
     gacaacgatc tagttttagg gcagactcct agaggcgata gagaacatgt cggatgcaga       180
     agtgcatgcg gcgcgtatct cgggtagctc aaagaagagg gtcatggccc ttactagaga       240
     gggccggaat tacgtagaag ctaagaggca agtaatccgg gaaaatttta atcgctgggc       300
     ccagcaaacc tctaaggcag ctaaaagacc cagatcagag ggggaatctc cacaacaatg       360
     gcagccggca aagaaggtta aggctagggc tggggagaaa tcctacagtg aggccctctc       420
     ctttgtcaaa gttgccattg tgcaggaggg gtaccctgaa gctcagctgg ctccggaaag       480
     gcttaccgcc atccagcagg ccgtgctgaa ggaatacgat caaatcccaa aagggagcat       540
     gcaggttaga ttagccaaat gcatgtatag gccagggttt gtcttggcca cctgtgctga       600
     ccagttcagt gcagagtggc ttagggacat tgtcccaaag ctcagaccct gggatggagc       660
     caggctgctg ccgttgctag gggatgatat tccaaggcct gaaaccgcag tagtatttat       720
     ccccgatgag catggcagca gagtagaggc cgatatagtg ctgaaacggt tggaggtagg       780
     caatcaaaag ttatgcaccg acaactggaa agtatggggt tgtaaacctg tggagggcgg       840
     tcaggtgtgg accttctcca tggacagggc ctcattagac gaattgagga ggctgaaaat       900
     gtctcctttc ttcggctggg gacaggtgaa gtttagggtg aagtcctcaa aatatcaggg       960
     cccggaagag gccaaaacat caacggaaga ggaggggttg atgttggaag ccacagaccc      1020
     tgtaatagaa tctacgccag gggggcagag tgggctggag ggggaaatgg aggccctccg      1080
     tgccgctctg tccgaattac cggcgggagt aggatatccc aaaggagaga gggtggaagc      1140
     gatggaggtt tccgtgggcg aactcccggg tggaagcgga cccttgcccc agaggcctag      1200
     cggccaggag caagagtcag gatccgctga aacacggggg ggagccgcgg gaactcgaga      1260
     cgtcgccccg cccaccttgg acgcttaaca tggtgctgaa agtggtgcag gcaaaccttc      1320
     accacgccaa ggctgcttcg gccgtggtgt gtaggaggtt tgacagcgag gggctagatt      1380
     tagccctact gcaggagcca tggtaccatg gggggtttgt ccggggtctt aatcccaaat      1440
     tggggaagac actatacagc aagtctgcta gtagacccag agcctgtata gtgcttaagt      1500
     atggaattgg atgtacactt ataccggagc tatgctctgg agattttgtt acagctcttc      1560
     taaatatcat caccgaggga ggaccaagaa aacttgtggt ttgctcggcc tattttcccg      1620
     gtgatgagga ctgccttcca tctctgttag gcgacattgt tgcccactgc cggagagaga      1680
     gattgcagct gatactgggg tgtgacgcca acgcacacaa tactgcatgg gggagcaccg      1740
     acgacaacgc cagaggtaag ttacttttag aattcatttc tggtgagggg ctgcatgtgt      1800
     ctaatatagg atcagtcccg acttttgtga ctgcaactag gagggaggtg ttggatttaa      1860
     ctctagccac gcgttgcatg tcaaataccg tagttaattg gcatgtatcg aacgagccgt      1920
     cttgttccga tcataggcat atcagattcg atatatgcgt cccgcccctk gttatcaaga      1980
     ggctgcgaag ccctagagaa acscactggg cgggatttam ccgagcgctc acagagtccc      2040
     tawcaagctt taaggttgat gttagaagga cggagagcat cgaacaggca gtggtccata      2100
     ttaatgaggc gatactagag gcctatcagg ataactgccc ggaaaagatc agaccgcaaa      2160
     ggtcgaaaac agtctggtgg aatagtcacc tcgaaaagag gaggaaagag gtgagaaggc      2220
     tgttcaataa ggccaaacac aaccaggact gggactcata tagacaagct ctgacgcagt      2280
     acaacaagga gataaggaag gccaagcgaa gcgcctggcg gtcattctgc gaggacatta      2340
     aagahacccc wgaatgcgcc agaatacata gagtcttggc gaaagaaggt actgcgggca      2400
     gagtaggttt catkgctaaa gawgacggaa cctacactaa gtcgatggag gaaaccctgg      2460
     aattactctt gagtgcccat tttccggggt ccactcggct atcggcctcg ggwkgcgagg      2520
     aggtcwgctc ggaggttcca aaaaggcctt camgagcgga ttggaagatt gcgacgcaca      2580
     tcgttcaacc aaacaggctg cggtgggcga tcgcamggtt ccagcccttt aaatccccgg      2640
     ggccggatgg aatttaccca gcctttctgc aaaaggcagg ggaggtgctg atgccmttcc      2700
     tgtgtagaat cctcagaggc tgtttggcct ggaggttcat tcctgaagca tggcaaaggg      2760
     tgaaggtcgt gttccttccc aaggttggga gattagggga ccaagcaccg cagtcattca      2820
     ggccgattag tctgtcgtcc tttctgctta aaacattgga aaggctttta gacagacata      2880
     ttcgggacga aatcctagga attcaacccc ttagtgatcg tcaatatgcc tatcaggcag      2940
     gcaagtctgt ggaccttgcg ttggatgatt ttaacaggct acttcaaaag tcccaagagg      3000
     acaaagaatt tgcgatggcc gcgtttttag acatacaagg ggcttttaat aatgtctcgs      3060
     ctatgtcgct gattgatgcc ctgtcaagga gaggcttggc gccaaccatc tgtcagtgga      3120
     tcaagtctaa cctattaggc cgcactgtta tggccacgtt ggacaactgt tcggtagagg      3180
     tcagggtggc gcggggttgc ccgcaggggg gggttttgtc cccccttctg tggacgattc      3240
     tggtcgatga cctcttggtg aaaatgacgg cggagagttt ctactgccta ggttttgcgg      3300
     atgacctggc agtggtkgtt aaaggacgat tcgcttatac ggtttcggag cgcwtgcaga      3360
     gagcgcttaa tattgtggat agatggagta gagcggaggg tctctccatc aatccgcata      3420
     agactagggt tgttcctttc acaaggagga agaatctggg tggattggwg caaccaattt      3480
     tggggggagt tactatcccc ttgtccatgg aggccaagta tcttggggtt atcttcgata      3540
     aaaggcttac gtggaattcw cacctaaaca tgatttccca caaggctaag gtttccttag      3600
     gatgctgcaa aaggctgtgt gggaaaagtt ggggactaag ccctaagatg acactctgga      3660
     tctacaagag tgtagtwaga cccatggtgt cacatggggc ggtggcttgg tgggcgaaaa      3720
     ccttgcaggt gggtggagtc cgggcgctca gtggtattca aaggctggct tgcctgagtg      3780
     tcactggtgc catgaggact tcccctactg cggccttgga ggttttgtta aatctgcccc      3840
     cactgcacat atacattcaa ggcgttgcaa gggccgttgt cgttaggctt atggaaggac      3900
     aagctcctat taccgtcagg catggaggag cgtatcaaga gttatatgag gagctggagg      3960
     ccgaccctat tttgggcctg ccttcggatt ctatgactcc caaatataac ttcgacaagc      4020
     ctttcaaagt ctgtattgga gaccgggagg cttggagacg tggaccccca gtggtgggag      4080
     attcaatgtg gtacactgat ggctccaaga tggaggaggg agtgggagcg ggagtgtacg      4140
     gggtgaagcc gaaatgtagc ttttcggtta gcctagggaa gctagctaca gtttttcagg      4200
     ctgagctagc tgcaattagg ttctgtgcta ccgagattga agggcgagga attattaatt      4260
     ctaaggtcgt aattttctcg gatagtcagg ctgctctacg ggcaattagt tcctaccagg      4320
     tcaactcaag gctggtttgg gactgtctgg gtgccctgaa ggaaattagt gaccaaaata      4380
     aggtctttct ggtctgggta cctggtcatt caggacataa ggggaacgaa gcggcagatt      4440
     tattggcccg ggaaggctct gcgggacact tcgttggccc ggagccctgt tttggggttc      4500
     cgaagtgtgt taagactgcg gccattaact tatgggtgca gagtaggtct caggagtggt      4560
     ggcttgccac cactgggcag agacaggcga aggagtttat caaaggctat tcgccgaggc      4620
     tgactgcaga attaatccgt caaggccgtg gggctatmag gatgattgta ggcctattaa      4680
     ctggccactg caggctcaga aaacacatgc atcgcatggg cctggcagat gatagccttt      4740
     gtaggttctg tcaggaagag gaggaaactg cactgcacgt gttgtgtcag tgtgaggggc      4800
     tcgtatggct aaggatgtta cttctcgggg aggaaaaacc aaggcctgag agctttaccc      4860
     aggagtcact ctccagmatt aagagtctga ttaaamggac gggtctggag ggtgagctct      4920
     aaagtcaggg gagccacaat agatccaaag gggtcgcggt ggcgcaggcc ttgaggccgc      4980
     ccaaatttaa tctaatctaa tctaatcta                                        5009
//
ID   Loa-2_SIn   repbase;    DNA;    INV; 5459 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   14-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Loa-type retrotransposon sequence - a consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5459
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 472-472 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..1674
FT                 /product="Loa-2_SIn_1p"
FT                 /translation="MDLQNKPKEGDATPSASTHTETVTEKAATAPAAGSDD
FT                 SXGLEDAAQQXQHSVEKLELRDXRLSGAARKRLRWLLKQXTPEDXARLQAM
FT                 QPMNTESKGFKRTRSDGXTPEALAKKRPKPTGSEKPQDTSXAKKATSSVSF
FT                 KQAVETKRVGILHHGYPEKSLSNEEMKAIQEAILQKIVDLEEGSVKPKFLG
FT                 STFRAGWMVLNCANEATMQWLLKNVGFLAPWEGARLKAVEEKDLPKALIVN
FT                 AFFPDSAEDKNDRILKLVKGQNDGLNTNDWRVLKRTQEGATVHLTLSVDGP
FT                 FHEALKKCGYKVSYKFGQVGIRPKSAAKPPANPPTTSNKSKGDSTLTTTGP
FT                 GPNQRKEAALRPPAAKGDVGSRXGRSETAGANG"
FT   CDS           1678..5364
FT                 /product="Loa-2_SIn_2p"
FT                 /translation="STAPGHLHTRPGLQIRTARTKVLQINLQHNKAASDVL
FT                 SRTFNKRVDIALIQEPYVYGGLVRRLATTADKLIYGKGLERPRTAILLKSH
FT                 VKFLPLPQFTCRDLTAAQVMLPTKGGWQEAXIASAYFPGDAPDNPPPEEVX
FT                 NLIQFCRERNRGLILGCDANAHHTVWGSSDINVRGECLFEYLCQTSLVIVN
FT                 KGREPTFVTRARQEVLDLTLATPALSSKIXNWHVSREASLSDHRHIVFDLG
FT                 TESLVGVVKRVPKRTDWPLYKELLRGDLEESKKIITCIEELERASTDLHNA
FT                 IHRAYEGSCPLKQIKSAASTFWWSQGLEELRSSARRLFNKAKKTKCQEHWD
FT                 RYREALTNYNKELRRSKRKSWRSFCESISDLPVAARLQKVMAKDHSNQLGH
FT                 LIKANGEYTVDAGEVLKLLLSTHFPGARIINDEVTREEGTSVPHHPHYHQR
FT                 VKGLANRIFAPSRVRWAISPFKPYKSPGGDGVFPALLQRGLDYLLPRITDL
FT                 YKHSFVLGHIPKLWRQAKVVFIPKGGGRSSAQPKSFRTISLTSFMLKGMEK
FT                 VLDQYLRNEVLTHAPLHKNQHAYQKAKSTTTALHRLVGSIERAHEVEEIAL
FT                 CAFMDIEGAFDNTSYDSIEEAANGKGFHPAIITWIKAMLSERRVKATVAGE
FT                 SATIITEKGCPQGGVLSPLLWSVVVDDLLDTLTTNGYEVQGYADDIVITIR
FT                 GQMDAIVSHRMQRALNITQQWCKRKGLRINPEKTTLVPFTNRRKLHLTAPV
FT                 VDGTRVGHTTEVKYLGVTLDQKLTWNSHLKKIQSKTALALHTCRKLFGRNW
FT                 GLRPNMIHWSYTAIIRPMVTYAAVVWWPKTKQRTAQQQLQKIQRLACLSIT
FT                 GAIKTCPTAAMEALLDLLPLHLQVRKEAIGSAIRIYNYHKPMPLNRTGHMS
FT                 ILMTDDLSDMAXLPTDSMKTRFNLEHNYEAVYTDRETWALGRPPFKRGALQ
FT                 WYTDGSKAATGXVGVGISGPNCRXSISLGKAPSVFQAEVYAINSCVSINLN
FT                 KGLKGATIDILTDSRAALRALTAHTCDSFLVWDCVTNLMHLAGDNQVTLWW
FT                 IPGHEGIKGNVEADELAKKGASTLPIGPEPWCGVTASYIKKLIRNWEERQK
FT                 SSYWSGTTGLAQAKKFISYTPQITRDALSLTKGDLAILVGLLSGHCQLRYH
FT                 LSIIGKAEDDGCRFCMESAETAAYIMCSCPAVGHXRQKFXGEALVTPDXIR
FT                 DLEPRRVVAFYKSLDLART"
XX
SQ   Sequence 5459 BP; 1487 A; 1491 C; 1465 G; 993 T; 23 other;
     ggggaggggg taaggttaag tcttaaccag cggcaggcgt agcgcaatac agtactttaa        60
     gggccatagc ttctccctgc tgaggatcgt ggtgcgggat gaagaatccc acccttctcg       120
     aggtgcccct gtctcgcaaa acaccacgga tctagaccag taaaggtcga aaaaccatcc       180
     cccgctttaa gccgtcgtgt cgtggctaat gagtattgca ccggggtaaa cgacgccggg       240
     cggtgtgatt tcctctcgca ggaccacgcc cgtcatacct cccgctgctg tctgcggtca       300
     tgtttcgcga gcagaagggg ggggggtctt agcttcaacg ctcggaccga gaggagacca       360
     cctctctaaa aaaccccaag ccagtggtgg aacagcgtgt gccgatggct gcgtgaccga       420
     gggggtgctc ggccgctaac atgcggactc tggagacgag ggaacctcca gtttcaatac       480
     ccttatcgcg gcatgcgggc tctgccgtgg cggaccatcc cttcctagct tctcgtggga       540
     tcaagaatgg atttgcaaaa caaacctaaa gagggggatg ccactccgag cgcatcaaca       600
     cacacggaga cggtgacgga aaaggcagca actgcccccg ctgccggctc cgacgacagc       660
     tntggcctgg aggacgccgc gcagcagcnc cagcactctg tggagaagct ngaactgcgc       720
     gacanacgcc tcagcggagc cgcaaggaag agactcaggt ggctcctgaa gcagnggact       780
     cctgaggacc nggcgagact acaagccatg cagccgatga acaccgagag caagggcttt       840
     aaacggaccc ggtccgacgg ctngacacct gaagcgctgg cgaagaagag gccgaaaccc       900
     acgggctctg agaagcccca ggatacctcg ncggcgaaga aggctacatc atccgtcagc       960
     ttcaagcaag ctgtggagac aaagagagtg gggatcctcc accacggata tccggagaaa      1020
     agcctctcaa atgaggaaat gaaggctatc caggaggcga ttctccaaaa gatcgtggac      1080
     ctggaagaag gctccgtgaa gcccaaattt ctagggtcta ccttcagggc cggctggatg      1140
     gtcctcaact gcgccaatga ggccaccatg cagtggctgc tgaaaaacgt gggctttctg      1200
     gcaccatggg agggagccag gctgaaggcc gtggaggaaa aagacctgcc caaggccctc      1260
     atagtcaacg ccttcttccc ggacagtgcg gaagacaaaa acgacaggat cctcaagctt      1320
     gttaaaggcc aaaatgatgg ccttaatact aacgactgga gggtcctaaa gagaacgcag      1380
     gagggagcta ccgtgcacct aacgttgtcg gtagacggac ccttccacga ggctctcaaa      1440
     aaatgtggct acaaagtcag ctacaagttt ggccaggtgg gcattagacc gaagagcgct      1500
     gcaaagcctc cggctaaccc accgaccacc agcaacaagt cgaagggtga ctccaccctc      1560
     acgaccaccg gacctgggcc aaatcaaagg aaggaagctg ccttgagacc gcccgcagcc      1620
     aaaggagacg tcggcagccg ggnaggcagg agtgagactg cgggggccaa cggctgaagt      1680
     accgccccgg gtcacctcca cacccggcca ggtctccaaa taaggaccgc aaggacgaag      1740
     gtcctgcaaa ttaacctgca gcacaacaaa gcggcctccg atgtgctgag caggacgttc      1800
     aacaaacgtg tagacattgc tcttatccag gagccctatg tctacggagg cctagtccgc      1860
     cgactagcaa caactgcaga taagctgatc tatgggaagg gactggagag gccaaggact      1920
     gcgatcctcc tcaaaagtca cgtcaagttc cttccactac cccagttcac ttgtagggac      1980
     cttacagcag cacaggtgat gctgccaaca aaagggggat ggcaagaggc gatnatagcc      2040
     tcggcctatt tcccagggga cgcccccgac aacccaccac cggaggaggt canaaacctc      2100
     atccaattct gccgggagag gaacagagga ctcatcctcg gctgcgatgc caacgcacac      2160
     cacacggttt ggggcagttc ggacatcaac gttagaggtg agtgcctctt cgaatatctg      2220
     tgtcaaacta gcctcgtaat tgttaacaaa ggcagagaac ccacgtttgt taccagagct      2280
     agacaggagg tgctggacct aactctggcg actcctgcac tcagctcaaa aattnccaac      2340
     tggcacgtct ccagagaggc ctcgctctcg gatcacaggc acattgtctt tgacctaggg      2400
     acagagagcc tagtgggagt ggtaaaaaga gtccctaagc gcacggactg gccgctctat      2460
     aaggagttgc tcagaggtga cttagaggaa tccaaaaaaa ttatcacatg tatagaggaa      2520
     ctggaaaggg cctcaaccga tttacacaac gcaattcaca gggcctatga aggtagttgc      2580
     ccgctaaaac aaattaagtc ggcagcctca accttttggt ggagccaagg cctggaggag      2640
     ctacgctcct cggccagaag actcttcaac aaggctaaga agaccaaatg tcaggaacat      2700
     tgggaccggt atagagaagc cctcaccaat tacaacaaag aattgagaag gtccaagaga      2760
     aaatcctgga ggagcttttg cgaaagcatc agtgacctcc cggtcgcggc ccgcctacaa      2820
     aaagtaatgg ctaaggacca ctccaaccaa ctaggccatc tgataaaagc caatggcgag      2880
     tatacggttg acgctgggga ggtgctaaag cttctcttaa gcacccactt tcccggtgcc      2940
     cgtatcatca atgatgaagt cacaagggag gaagggacgt cggtgcccca ccaccctcac      3000
     taccatcaaa gggttaaagg cttggctaac cgcatctttg cgccaagcag agtaaggtgg      3060
     gccatctcac ccttcaaacc ctacaaatca cctgggggtg atggggtctt cccagcccta      3120
     ctacagcggg gcttggacta cctgctacct cgcattacag atctgtacaa acacagtttt      3180
     gtgttaggac acatccccaa actgtggagg caggctaaag tggtctttat accaaagggg      3240
     ggggggcggt ccagtgccca acccaaatcg tttagaacga ttagcctgac ctcgtttatg      3300
     ctaaaaggca tggaaaaggt gctggaccag tatctcagaa atgaggtgct gactcatgcc      3360
     cctctccaca aaaatcagca tgcttaccaa aaggcaaaat ccaccaccac cgccttgcat      3420
     cgactggtgg gcagcataga aagggcccat gaggtcgagg agatagccct atgcgccttc      3480
     atggacatag aaggagcttt tgacaacaca tcgtacgact ctattgagga agcggccaat      3540
     ggaaaaggct tccatcctgc aatcatcaca tggatcaaag ccatgctgag cgaaaggagg      3600
     gtcaaagcaa cggtggcagg ggaatccgca accatcatca ctgaaaaggg gtgcccccaa      3660
     ggaggggtat tatcaccgct tctctggtcg gtggttgtgg acgatctcct ggatacactg      3720
     acaacgaatg gatacgaggt gcagggctat gccgacgaca tagtcattac catcagagga      3780
     cagatggacg ccatcgtttc acatagaatg caaagggccc tgaacatcac gcaacagtgg      3840
     tgtaaaagga aaggtctacg catcaatcca gaaaagacca ccctggtgcc gttcaccaat      3900
     agaaggaagc tgcatctcac ggcacccgtg gtggacggca ctagagtcgg ccacacaaca      3960
     gaagtgaaat acctcggagt aacccttgat caaaagctga catggaactc acatctgaaa      4020
     aagatccagt cgaaaaccgc cttggcactt cacacctgcc gcaagctctt cggcaggaat      4080
     tggggtttaa ggccaaatat gatccactgg tcatacactg ccataatcag acccatggtc      4140
     acctacgctg ccgtggtatg gtggcctaaa actaaacaaa ggacggcgca gcaacaactg      4200
     caaaagatac agaggcttgc ctgcctcagt atcacgggag ctataaaaac ctgcccgaca      4260
     gcagccatgg aggccctact ggacctgctc cccctccatc tacaggttcg gaaagaagcc      4320
     atcggttcgg caatccgaat ctataattat cacaaaccca tgccgctcaa tcgaaccggt      4380
     catatgagta tcctcatgac ggacgatctg agcgacatgg ctcnactccc tacggactcg      4440
     atgaagacca gattcaacct cgagcacaac tatgaagctg tctatacaga cagagagacg      4500
     tgggcactgg gaaggccccc cttcaaaagg ggcgcgctac agtggtatac cgacggatcc      4560
     aaagcagcca caggaantgt gggagtcggc atcagcgggc ccaattgccg cntatcgatc      4620
     tccctgggca aggcgccttc tgtcttccaa gcagaagtgt acgctatcaa ctcctgcgtc      4680
     tctatcaacc tgaacaaagg tctgaaaggc gcgaccatag atatcctaac agatagccga      4740
     gcagcgctaa gggctctcac agcccacacg tgcgactctt ttctggtctg ggactgtgtt      4800
     actaacctca tgcacctggc cggagacaat caagtcacac tgtggtggat ccctggtcat      4860
     gagggcatca aaggcaatgt agaggcagac gaactcgcca agaaaggggc gagcacgctc      4920
     cctatagggc cggagccctg gtgcggagtg actgccagct acatcaagaa actaatacgt      4980
     aactgggaag agaggcaaaa gtcctcttac tggagcggca cgacagggct tgctcaagcc      5040
     aagaaattta tttcatatac gccgcaaata accagggacg cactgtcctt aaccaaaggg      5100
     gatctagcta tcctcgtagg cctgctctca ggacactgcc aactcagata ccacctcagc      5160
     ataatcggca aggctgagga cgatggatgc cgattctgta tggagtcggc cgagacggct      5220
     gcatatataa tgtgcagctg tccggccgtc ggccaccnca gacagaaatt cntgggggaa      5280
     gcactcgtna cccctgatca nattagggac ctngagccta ggcgggtcgt ggctttctac      5340
     aagagcctag acctggcccg aacctgagta agggcatagt cacaatagat ctcaaaggtc      5400
     gcggtgacgg cggcatncgc tcnggccctc ttgccactta ttantattat ttattatta       5459
//
ID   LOA-3_CQ    repbase;    DNA;    INV; 4725 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4725
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 150-150 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           115..888
FT                 /product="LOA-3_CQ_1p"
FT                 /translation="MNHFKDHDFLINYKFGQTTLRRKLPNKENTNENAEXM
FT                 GNPNDNQRRNDQETAKTPENQGEVCVSGPSGIQKPLVNGKSSNYDHQHQKR
FT                 SGSFANQNNSQLSNGNMASKYSTQYKKRSGSFVNQNYKQKYNTNKHSNNYP
FT                 KXQNCSGSSANQDNKQPRSENKRAGTYMNPHGFWKSTTPIDHDQKATGQPR
FT                 HKKYPQAMLDRKADGELRARNLSRPQKSLDRPEIPSGSGATLDQSLSPPSN
FT                 ITRSSGPSKDRKKDLKQ"
FT   CDS           960..4631
FT                 /product="LOA-3_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSKSIKFIQINLHHARGASGALSQKCLKENVSVALIQ
FT                 EPWAHKGKVLGLDTQNSTIIYNPLNDKPRTAILIKRDLNYVPITEFILKDI
FT                 VAIKLEIPTAQGKTEAYIASAYFPGDENEVPPPGVAAFIQFCKQNNKQFII
FT                 GCDANSHHTVWGSTDINNRGEYLYEYISANNIDLCNKGNQPTFITKTRREV
FT                 LDLTLCSPFISPRVRKWQVSDEESLSDHRQIEFEYDAGEIITVSYRNPRKT
FT                 NWELYKNKVKSIQIDKIEDKNHLEKAAKNITDVIISAFNESCPVRKQKSNR
FT                 DVPWWNDALGKLRKKARRLFKQSKKTKQWEQYRKALTAYNKELRKSQRKSW
FT                 RNNCEKIEKTPDVAKLQKALSKEHSNGLGSLKKPDGKFTENSAEVLEMMME
FT                 THFPGSMIVSSDSGEMEEDTNSGLEWTIGRNTNLPSTIFTRSKVAWAMNSF
FT                 QPFKSPGLDGIFPALLQYGGNKLLESLTEIFKASFKLGYIPKIWSKTRIVF
FT                 IPKVGKKDKTAPKSFRPISLTSTMLKIMEKIIDEYIKSNILKTFPLSKAQF
FT                 AYQQNKSTITALDTLVTKLEKNLEAKEIALTAFLDIEGAFDNASYSSIKKC
FT                 MEKRGFDPCIIQWIMTMLNNREVFAELGMSTITVKTTRGCPQGGVLSPLLW
FT                 SLVVDDLLNKLTTEGFEVIGFADDVVILTRGKFAHVLSERMQYALNLTSQW
FT                 CANQGLSINPAKTILVPFTRKRKFTLKTLSLNGSNLKYSTTAKYLGVILDE
FT                 KLNWNSHLEQVINKATAALWVSRNTFGKQWGLKPRMIHWIYTAIIRPRITY
FT                 AALIWWPKTKQLTAQNKLQKLQHLISTSITGASRNTPTKALNAALHILPLH
FT                 QFVQMEAAKSVLRLRRTNNISEYNSVEHLQILAELEINQGVFEITDWMESK
FT                 LDLDVPFKVVETNRLEWESGGPTIPPGSIIFYTDGSKMGNKTGAGITGPGL
FT                 NISIPMGQWTTVFLAEIYAIVECTAICLKRNYRFAKICIFSDSQAALNALK
FT                 SPTCQSRLVWECRTLLKQLASRNRVHLYWVPGHRGIDGNEIADLLARRGSD
FT                 GHFIGPEPFCGVSKSTLNMEFTQLEKKLIQLNWVKAHDMRQSKMFIVPSKQ
FT                 KFAQLMNMNKKYLRIYIGLITGHCPSRYHLKKIGLSPIDICRICNCETETS
FT                 KHLICECSAVSAKRRRIFNKGIISPNDVWLENPGTVVDFILEILPNWGTSQ
FT                 CQPMTVTLNGNVSS"
XX
SQ   Sequence 4725 BP; 1733 A; 973 C; 932 G; 1083 T; 4 other;
     atctacatcg aaagccaaaa cgatggtatc aacaccaaca attggagagt catcgaaagg        60
     aagatcatct acgaaaagca cgtcgaatgg ttgtttacgg ttgatgaggc gtccatgaac       120
     cactttaagg atcatgactt tctcatcaac tacaagttcg ggcaaacaac tctgcggagg       180
     aaactgccga acaaagaaaa taccaacgaa aatgcggaaa wtatgggcaa tcccaacgac       240
     aaccaacggc gcaatgacca agaaaccgct aaaaccccgg agaaccaagg tgaggtttgc       300
     gtatcggggc ctagtgggat ccaaaaacct ctggtcaatg gtaagtcatc aaactacgat       360
     catcaacatc aaaaacgctc tgggtccttt gcgaaccaga ataattcaca actaagcaat       420
     ggaaacatgg cttcaaaata ttctacacaa tacaaaaaac gttctgggtc ctttgtgaac       480
     cagaactaca aacaaaaata taacaccaat aaacactcaa ataattaccc aaaaaamcaa       540
     aattgttcag ggtcctctgc gaaccaggac aacaaacaac caagaagcga aaataagcgt       600
     gcagggacat atatgaaccc acacggtttc tggaagtcca caactcccat cgatcatgac       660
     cagaaagcta ctgggcaacc aagacataag aaatacccac aagctatgct ggaccgcaag       720
     gccgatggag agctgagggc cagaaacctg tctaggcccc aaaaaagcct ggatcgccca       780
     gaaatcccct caggctctgg cgccacactg gatcaatccc tatcgccgcc atcgaatatt       840
     acccgatctt ccgggccttc taaggaccgg aagaaggacc tgaaacaata ataacaaaac       900
     ctcagtacaa aamaaaaaaa acagaacgaa aaatgccgaa taaatgaaag caatacaaaa       960
     tgagcaaaag tattaaattt attcagataa acctccatca tgcgcgggga gcatctggag      1020
     cgctcagtca aaaatgctta aaagaaaatg tgagtgtagc attaatccaa gaaccatggg      1080
     cgcacaaagg gaaggtwctt ggattagaca ctcaaaatag tacaattatt tacaacccac      1140
     taaacgacaa accaagaaca gcaattctga ttaaaaggga cttaaactat gtaccgatta      1200
     cagaattcat acttaaagac attgttgcga tcaaactgga aattccaaca gcacagggaa      1260
     aaactgaagc ttacatagct tcagcatact tccctggtga cgaaaatgaa gttcctcccc      1320
     caggtgtcgc agcattcata caattttgca aacaaaacaa taaacagttc atcattgggt      1380
     gtgacgcaaa ctctcaccat acggtctggg gaagcaccga cattaacaac aggggtgaat      1440
     acctttatga atacatatct gcgaataaca tcgatttgtg taacaaagga aatcaaccta      1500
     catttattac aaaaactaga cgagaagttc ttgatctgac gctctgtagt cctttcatct      1560
     caccacgagt tcggaaatgg caggtgtcag atgaagaatc tctgtcggac cacagacaaa      1620
     tagagtttga atatgatgct ggggaaataa tcacagtttc atatagaaac cccaggaaaa      1680
     ccaactggga attatacaaa aataaagtaa aatcaatcca aatcgataag attgaagaca      1740
     aaaatcacct agaaaaagcc gctaaaaaca taacagatgt gattatatct gcgttcaatg      1800
     aaagctgtcc cgttagaaag caaaaatcga atcgagatgt tccatggtgg aacgatgctc      1860
     tcgggaaact caggaaaaaa gctcgtcgat tatttaaaca atccaaaaaa acaaaacagt      1920
     gggagcaata ccgaaaagcc ttaactgcct acaacaaaga acttagaaaa tctcaaagga      1980
     aaagctggag gaataattgc gaaaaaattg agaaaacccc ggacgttgca aaactccaaa      2040
     aagctctttc caaagaacac agtaatggtc tgggtagctt aaagaaacca gatgggaagt      2100
     ttactgaaaa ttccgcagaa gtgttggaaa tgatgatgga aactcatttt cctggttcta      2160
     tgatagtctc gagtgatagt ggagaaatgg aagaggatac gaacagtggg ctagaatgga      2220
     ccattggtag aaataccaac cttccaagca ccattttcac ccggtctaaa gtagcttggg      2280
     caatgaattc ctttcaaccg ttcaaatcac cgggattaga cggaattttt ccagctctcc      2340
     tgcaatatgg agggaacaaa ttacttgagt ccctcacaga aatttttaaa gctagtttca      2400
     aactaggata cattccaaaa atctggagta aaactcgtat tgtgtttatt ccaaaagttg      2460
     gaaaaaaaga taaaacagct ccaaaatctt tcagaccaat aagtctaaca tcaaccatgc      2520
     ttaaaatcat ggaaaagata atagatgaat acataaaatc aaacatctta aaaacctttc      2580
     cactaagtaa ggcacagttt gcgtatcaac agaataagtc aacaattaca gcattggata      2640
     ctcttgttac aaaactggag aaaaatctag aggctaaaga aattgccctc acagcttttc      2700
     ttgacattga aggagctttt gacaatgcat catacagctc catcaaaaaa tgtatggaaa      2760
     agagagggtt tgatccctgc ataatacaat ggatcatgac catgttgaac aatcgtgaag      2820
     tatttgccga actaggaatg tcaacaatta ctgttaagac cactaggggt tgtccacaag      2880
     gaggtgtact gtcaccgttg ctgtggtcac tagttgtgga tgatcttctc aacaaattaa      2940
     caacagaagg ctttgaagta attggctttg ctgatgatgt ggtcattttg actcgcggaa      3000
     aatttgccca cgtcttgtca gagagaatgc aatatgcttt aaacctcacg tcacaatggt      3060
     gtgcaaatca agggctcagc attaaccctg cgaaaactat tttagttccg tttacgcgta      3120
     agagaaaatt caccttgaaa acactatcgc taaacggctc aaacctaaaa tattcaacga      3180
     cagcaaaata tcttggagta atccttgacg aaaaattgaa ctggaactct cacttggagc      3240
     aagttataaa taaggcaacg gctgctcttt gggtgagcag aaataccttt ggaaagcaat      3300
     gggggctaaa accgagaatg attcattgga tctatacggc aataataaga cccagaataa      3360
     catacgctgc tcttatatgg tggccaaaga caaaacaatt gacagctcaa aataaattac      3420
     aaaaactaca gcatctaata agtacatcta ttacaggtgc atcgcggaat acaccaacaa      3480
     aggccttaaa tgccgctctt cacattcttc ccctgcatca attcgtgcaa atggaagctg      3540
     cgaagagtgt tttaaggcta agaagaacaa acaatatatc agaatacaac tccgttgaac      3600
     atttgcaaat cttagccgaa ttggaaataa accaaggagt attcgagatt acagactgga      3660
     tggagagtaa gttggaccta gacgtaccgt tcaaagtagt tgaaacaaat cgcctagagt      3720
     gggagtcagg agggccaact attcctccag gatcgatcat attttacacc gatggatcta      3780
     aaatgggaaa caaaacgggt gctggaataa ctggtcctgg actgaatatt tcaataccta      3840
     tgggacaatg gacaacagta tttttagcgg aaatatacgc tattgtggaa tgtacagcaa      3900
     tctgtttaaa acgaaattac agatttgcaa aaatatgtat cttctcagac agtcaagctg      3960
     ccttgaatgc attaaaatcg ccaacatgcc agtccaggct tgtttgggaa tgtagaacac      4020
     ttttgaaaca attagcatcc agaaaccggg tacatctgta ctgggtcccg ggtcaccgag      4080
     gaatagatgg taatgaaata gcagaccttt tagcaagacg aggttcggac gggcatttca      4140
     taggcccaga accattctgc ggagtctcga aaagcacact taatatggaa ttcacacaat      4200
     tggagaaaaa gttgattcag ttgaactggg tgaaagcaca cgatatgcgt cagtcgaaaa      4260
     tgtttatcgt cccctccaaa caaaaattcg ctcaactcat gaatatgaat aaaaaatatc      4320
     tcagaatata catcggtctc ataacaggac actgtccgtc tagatatcac ctgaaaaaaa      4380
     ttgggctcag tccaattgat atctgtcgga tttgtaactg tgagactgaa acatcaaaac      4440
     atttgatttg cgaatgcagc gctgtttctg caaaaagaag acggatcttc aataagggca      4500
     taataagtcc aaatgatgtc tggctagaaa accccggcac agtagttgat ttcatcctag      4560
     aaatcttgcc aaactggggt acatcgcagt gtcagccaat gaccgtaacc ctaaatggta      4620
     acgtgtcatc ctgaaatttg cgataacaaa atgggtatac cgcaatagat caactcaatg      4680
     gtcgcagtgg ttctaaaccc aacaaaaaaa aaaaaaaaaa aaaaa                      4725
//
ID   LOA-3_DAzt  repbase;    DNA;    INV; 5354 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-3_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5354
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 879-879 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1709
FT                 /product="LOA-3_DAzt_1p"
FT                 /note="DUF4780."
FT                 /translation="MEGEKGEARTGMSVQTSVECVTATTGGHGEENSSLRV
FT                 ASGHTSDVAGAGHVSCTTTARKPPHSKLNRTDAAVEADTDLESVFSISNTE
FT                 EESLLRSPEPGTSSPRREGPKRSREGMKALSQYKAALKILSRLQSKADISQ
FT                 EEKARLTWAEQRVEEGRRHFSQMPQMRASIGKYANKVEEMLASKRQRSVES
FT                 ASKDTPASKRQRGPKGAAPPQKVAIPPNKHPKSRTASDAARRHLIVALIDR
FT                 SDENGKMTAAQWKLVHARLVDALLARMEEDPAAPMPTFDGAGWLNGVKILK
FT                 CNDDPTRRWLTQTVGQLDAMWDGAKLEVVDRELIPSIPKAKVVFPIAIQGD
FT                 RALRLLQRQNPEIPTGNWKVLHTGSPLPNEGGQCAILQINKEAEDLLYPRF
FT                 GKMAWGMGSVYLRLKKRHPGDKDAHTLQAGEVEKDLGLDTIVEAAQGLALD
FT                 ESEEEEDGDVTIVVNPSSGVEPATHATECAAAQLA"
FT   CDS           1678..5265
FT                 /product="LOA-3_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MPLSVLQLNLHKSKVASAELLIAMEQGPVDIALVQEP
FT                 WIASGNSVAGLKSSNYNSFYTTPVSRNRTIVLVRKGIHAHLMPNYSTDDLT
FT                 VVILESEEKRLLVASCYMAHDRPAPPEELRSLVEETGSKDCQLLIGTDANA
FT                 HHSVWGSPDTNDRGESLLEFILSTNIEVANVGEDYTYVGPTSSNVLDLTLV
FT                 TGRNAVVTGWRVLERPSFSDHRYIQFKHEFKHTSKVAVYRNPRNTNWEKFR
FT                 KTVTSKLANPGSVKSADDIEKSLGTLSRELLDGYRAACPPSSTKRRNKPLW
FT                 WNRELSLLRNNLREFFKLAKQANEEFINEEYRNLLRNYKKEIRKAQRSSWR
FT                 NFCSNIEKVPETARLRKLLSKQPTIQSQLKLNNGKWSESSEEALTALMEAH
FT                 FPGCTEVTDATTQHDPAAEEQAIPTGLITHKKIQWAIDSFTGIKAPGLDGI
FT                 FPAMLQVAKEVITPWLFAIYTACLRTGYIPIHWRTSRVVFLPKAGKCSHVS
FT                 PKDYRPISLTSFLLKTLEKLLELHIRKEVGGLMSSNQHAYTKGKSVETALH
FT                 SLVATVEKALNTKKYALGVFVDISGAFNNVATSAIMGRLEASNAHPAINHW
FT                 IKNLLSCRRVQSEWGTASIARGAHRGTPQGGVLSPLLWNLVVDDLIKRFER
FT                 RAPKITAYADDISIIITGVCPSTLSSIMENTLREICEWANEVGLSINADKT
FT                 DLILFTKRYKVPSWIPPKIDQTRLTPKTQVKYLGTVLDSKLAWRPNVVERV
FT                 KKATIALYASKKMLSSTWGLSPALMHWIYISVVRPTLLYGVLVWWQATRKK
FT                 TYHKLMEKTQRQALLCITGALRSTPTKALETILGIDPLDIHAHLTAGKAAQ
FT                 RLIASGNMQPQTYGHSSIGRDMISNTDYMTPRTCLDINTNAFLGPEEWKKG
FT                 QIQHLNIYTDGSKMEGGVGAGIYCTDPEIGLSYKLPDHCSIFQAEVFAIRK
FT                 AAEVAQHAGRPHNVVNLFVDSQAAIKSMQSSTVSSRSVLASREALDSLCTT
FT                 KSVRIYWVPSHQGIEGNEAADVLAKEGVGLARERAENVPVSLRTLQGDLEK
FT                 RARLENESRWRSTTNCRVSKIMCKKRNEKLSHYLLHLPRKDCRLLVGILTG
FT                 HCLAASHAARLNITDRNSCRKCDELGAIETLEHLICSCPALSLARIRYLGA
FT                 PTLTSLEDASKRSPKELLAFAKNTSILGDIKPSLAPA"
XX
SQ   Sequence 5354 BP; 1547 A; 1433 C; 1472 G; 902 T; 0 other;
     ggctggcaaa aatcctctag ctgaaccctc cacgagggtg ccggctgggc aatggacact        60
     gcattatccc ggacgagggt aatgcattgt cgcttgcccc gtccggggca atgcagtgtc       120
     tagctaaggc aatgacccag cgtcttctcg acctcgagtc gggagagctg ggttagggcc       180
     atggctagag gtgcctggcg gccaggcata aaacgctagg gggtggtacc cccgaaaaat       240
     atcaaccact atggacctac gggccgaata tggagggcga gaaaggagaa gcacggactg       300
     ggatgtcagt ccaaacgtcg gtggaatgcg tgactgctac caccggcggg cacggggagg       360
     agaattcctc tctgcgtgtc gccagcggtc acacctcgga cgtggcggga gcaggccacg       420
     tcagttgtac aacgactgcc agaaaacccc ctcactccaa gctgaaccgc acggatgccg       480
     ctgtcgaagc agacacggat ctggagagcg tgttttcgat cagcaacacg gaggaagaga       540
     gccttctccg ctcaccggaa ccgggcacca gctccccgcg tagggaaggg ccaaagcgct       600
     ccagggaggg gatgaaggct ctctcgcaat acaaggctgc cctaaaaatc ctgagccggc       660
     tccagagtaa agccgacatc tcccaggagg agaaagccag gctaacctgg gccgagcagc       720
     gggtggaaga gggcagaaga cacttctcgc agatgcccca aatgcgggca tctatcggga       780
     agtatgccaa caaagtggag gagatgctgg ccagcaagag gcaacgctcc gttgagagtg       840
     ccagcaagga cactccggcg agcaagcggc aacgcgggcc gaagggcgca gcccccccac       900
     agaaagtggc gatcccacca aacaaacacc cgaagtcaag gacggcgagt gatgcggcca       960
     gacgacactt gatcgtggcg ctaatcgacc gtagcgacga gaacgggaaa atgacagcag      1020
     cgcaatggaa gctagtgcac gcacggctgg ttgacgcact gcttgcacgg atggaggagg      1080
     atcccgcagc ccccatgccc accttcgatg gtgctgggtg gctgaatggg gtcaagatcc      1140
     tcaagtgcaa cgatgaccca acgcgtaggt ggctaacgca aactgtcggc caactggacg      1200
     cgatgtggga tggtgccaag ctggaggtgg tagacaggga gctaatcccg tctataccga      1260
     aggcgaaggt agtcttcccc atcgcgatcc aaggagacag ggcgctgagg ctactgcagc      1320
     gtcagaaccc ggaaattcca acggggaact ggaaggtgct gcacactggg agcccgctac      1380
     ccaacgaggg gggccagtgt gcaattctcc aaatcaataa agaggcggag gacctcttat      1440
     accccagatt tgggaagatg gcgtggggca tgggcagcgt ttatctgcgc ctgaaaaagc      1500
     gccaccccgg ggacaaagat gcgcacaccc tgcaggcagg cgaggtagag aaggacctag      1560
     gtctggacac tatcgtggag gccgcccagg ggcttgcgct ggacgagtca gaggaggaag      1620
     aggacggtga tgtgacgata gtggtcaacc cgtcgagcgg agttgagcca gccacccatg      1680
     ccactgagtg tgctgcagct caacttgcat aaaagcaagg tggcgtcggc ggagctcctc      1740
     atagccatgg agcaagggcc cgtcgacata gctctagtcc aggagccatg gattgcatca      1800
     ggcaactctg tggccggact aaagtcctct aactacaact cgttctacac aacaccggta      1860
     agcaggaaca gaaccatcgt acttgtacga aagggaatcc acgctcacct tatgcctaat      1920
     tacagcaccg atgacctaac agtagtgatc ctggaaagcg aggagaagcg cctcttggta      1980
     gcctcctgct acatggcaca cgacagaccc gcaccacccg aagagctaag gagtctggta      2040
     gaagaaaccg gatccaagga ctgccaacta ctcattggca cggacgctaa tgcccaccac      2100
     agtgtatggg gaagccccga taccaatgac cgaggtgagt ctcttctaga atttatactt      2160
     tccactaaca tagaagtagc aaacgtgggg gaggactaca catacgtggg tcccacctca      2220
     tcaaacgtgc tagaccttac actcgtaacg ggaaggaatg ccgtggtgac tgggtggagg      2280
     gtcctcgaaa gaccatcctt ctcagatcac aggtatatcc agttcaaaca cgaattcaaa      2340
     cacacctcga aggtagccgt ctataggaac ccccggaata caaactggga aaagttcaga      2400
     aagacggtta cctcgaagct cgcgaatccg gggtcggtaa aatcggctga cgacatagag      2460
     aagtctcttg ggactctatc cagggagcta ctggatggct accgcgcagc atgcccaccc      2520
     tcgagtacga aaaggaggaa caagccactc tggtggaaca gggagctctc cctcctaaga      2580
     aacaacctcc gggaattctt caagctcgcc aaacaagcga atgaagagtt cataaacgag      2640
     gaatacagga acctactcag gaactacaag aaagagatac gcaaggcaca acgcagctcg      2700
     tggaggaact tctgctccaa catcgagaag gtgccagaaa cggcaagact caggaagctg      2760
     ctctcgaagc agcccaccat acagagtcag ctaaagctca acaatggaaa atggtcagag      2820
     agcagcgaag aggccctgac agcactaatg gaggcacact tcccaggctg caccgaggtc      2880
     actgatgcca caacgcaaca cgacccagca gcagaggaac aagccatccc cacaggacta      2940
     ataactcaca agaaaatcca atgggccata gactccttta caggcattaa agcacctgga      3000
     ctggatggga tatttccagc catgttgcag gtggccaaag aggtgatcac cccatggctt      3060
     ttcgccatat atacggcatg cttgaggaca ggctatatac ctatacattg gagaacttcc      3120
     agagtcgtct tcctgccgaa ggcaggaaag tgcagccatg ttagtcccaa ggattataga      3180
     ccgataagcc tcacctcctt cttactaaaa acgctagaaa agctgctgga gctacacatc      3240
     agaaaggaag tagggggact gatgtcaagc aaccagcatg cctacacgaa aggaaaatcg      3300
     gtagaaacag cactacactc gctagtagct actgtcgaga aagccctcaa caccaagaaa      3360
     tatgcattag gagtatttgt cgatatatcc ggagcattca acaacgtggc cacaagcgca      3420
     ataatgggtc gcttagaagc atccaacgca cacccggcaa tcaaccattg gataaagaat      3480
     ctcctcagtt gcagacgggt tcaatcggaa tggggtaccg cctccatagc cagaggggca      3540
     cacagaggca caccgcaagg tggagtacta tcgcccctcc tgtggaacct ggtggtcgac      3600
     gacctaatca agagattcga aaggagagcc ccaaaaataa cagcctatgc agatgacata      3660
     agcataatta ttacgggtgt atgtccatcg acactcagct ccataatgga aaacacactc      3720
     agggagatat gtgagtgggc gaacgaagta ggactcagta tcaacgcgga caagacggac      3780
     ctcatcctct tcaccaagag gtacaaggta ccgtcatgga tccccccgaa aatcgatcaa      3840
     acaaggctaa ccccgaaaac acaagtcaaa taccttggca cagtactgga cagcaagctg      3900
     gcatggagac ccaatgtagt ggaaagggtg aagaaggcca ccattgcgct atatgcatca      3960
     aagaagatgc tcagcagcac atggggcctg tcacctgctc taatgcactg gatctacata      4020
     tcggtggtgc gaccaactct gctgtatgga gtcttagtgt ggtggcaagc taccaggaag      4080
     aagacgtacc acaagcttat ggaaaagact cagcgacagg cactgctctg catcacgggg      4140
     gcactgaggt ctaccccaac aaaagcactc gaaaccatac tcggaattga ccccctggac      4200
     atccacgctc atctgacggc tgggaaggcc gctcagcgcc ttattgcgtc gggaaacatg      4260
     cagccacaaa catacgggca tagttcaatc ggcagggaca tgatcagtaa cactgactac      4320
     atgacccctc gaacgtgcct cgacatcaat acaaacgcat ttctgggtcc cgaagaatgg      4380
     aaaaaaggcc agatccaaca tctaaatata tacacagacg gctccaagat ggaaggagga      4440
     gtaggagccg gcatatactg cacagacccc gaaatagggc tgtcatacaa gctaccagac      4500
     cactgcagca tattccaggc ggaagtcttt gccatcagga aagcagcgga ggttgcacaa      4560
     cacgcaggga gaccacataa cgtggtcaat ctgtttgtag acagccaagc ggcgataaaa      4620
     tccatgcagt cgtccacggt cagttctaga agtgtcctgg cgagcaggga agcattggat      4680
     tcactatgca cgaccaagtc agtgcggatc tactgggttc ccagccatca gggcattgaa      4740
     ggaaatgaag cggcggacgt tctggctaag gaaggcgtcg ggttggcgag agaaagagcg      4800
     gaaaatgtgc ctgtctcact cagaacgcta cagggcgatc tagaaaagcg ggccagacta      4860
     gaaaacgaga gcaggtggag gagcacgacc aactgcagag tctcgaaaat catgtgcaaa      4920
     aaacgcaacg agaaactcag ccactatctg ctgcaccttc cacggaaaga ttgcagactg      4980
     ctggtgggaa tactgacagg tcactgcctg gccgcatcac acgcagccag actaaacatc      5040
     accgacagga acagctgcag gaaatgcgat gaacttgggg ccatcgaaac cctagaacac      5100
     ctaatctgca gctgcccggc tctctcactg gccaggataa ggtacctggg cgcaccgacg      5160
     ctgacatcgc tagaagatgc ctccaagagg tcgccaaagg aactgctggc cttcgccaaa      5220
     aacacctcaa tcttaggtga tataaaaccc tcactagcac ccgcgtaaag gtccataacc      5280
     ggataactaa gggccatact ggcctatggg agaccccagg agggtcgtcc gggttaacct      5340
     aacctaacct aacc                                                        5354
//
ID   Loa-3_DEl   repbase;    DNA;    INV; 2822 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2822
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 562-562 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2822 BP; 793 A; 697 C; 662 G; 666 T; 4 other;
     gtctatactt ccccctccca cctagaaaga gtttctttga agagggtgcg tgaacaagtt        60
     ttagtatagg ccttttaggg ctgtgggcta ggtagtcctc tgaaggaatt cacaagccct       120
     gtatcggtag acacatagcc cgtgtttttc gcctcctcat ctaattccat ttcatcgtcg       180
     cttttgcagg gtttctttgc cttggtacca tcctgctata wagagtcaga tgggcctgaa       240
     attgtcaagt gttgacgtgt tcgaggcact ttttggtggg gtgctgatgt tgtttttgtc       300
     tttattttgt tttccaattt aaacctgaga tggccctgct tctttaagac tttattgctg       360
     ttgccgcttg atcagttcaa ggagattccg gttctctatt gttcagggtg aaatcgacac       420
     cttggcaacc cccttttcct cgtcaggtgg gacgagcaca atcttcgcgc catgccagag       480
     ttcgcctatg ctatacagtg tatttaggga atcgcacggg atcttcgttg gcccctacta       540
     catctttggc tcttagaaac cacttgtcac caaaaatkgc ctggttgttt tcttacttcc       600
     aaatggtcaa attttgcgac tgataatttt ccttcggtcg attatggttt actgaagctc       660
     gccaagttgg tctccttgcg agttttcttc attcccagtg ccctcgttga gtcatccgtc       720
     tgcttttttt cggtgtgtct attgcccttt tggcttagga caaggtcttg caaggagctt       780
     ggcattcacc ttagctgctg cggccgccta ccatgtggac gaggtttccc cctcagccgt       840
     aggggtcatt gcagccttag gtcctgctcg cttcgccgac ttgacattgg gcatagttgc       900
     cttggtcttc tttaatgcgt ttgtggttac cccgcagacg aacccccgaa atacaaactg       960
     ggataagttc aagaaataaa taaaatcaag aaacgcgacg cacttgggca tagtaacaac      1020
     cgcggaacac ttagaaactt tatccaagga attactagat gggtatcacg catcctgacc      1080
     aatctcgaga atgaagaagt gcaccaaacc gggacctttc actgcaaaga aacaacctca      1140
     gagaattttt caaaatcgcc aaacaggcgg aagacgagac catcagcgag gaacacaaga      1200
     tccagcccaa ggagtacagg aaagaagtac gaagggcaca aagaaactcg tggagaaact      1260
     tctgctccag tatcgagaaa gtcccagaaa cggctagact acggaagctg ctatcgaagc      1320
     aaccaaccgt acagagtcag ctcaaamgtg acgacggaca gtggactgag ggcaatatag      1380
     aagcccttac agcactaatg caagctcact tccaaggatg ctcagaagtt ccggatgcta      1440
     atgcacatca agacctgaca acctgcgaaa taagccgccc agctgtctag tatcctctag      1500
     aggaatccaa tgggctatag actccttcgc ggggcttaaa tatttccagc catgctacag      1560
     atgaccaagg aagagatcac cccatggctt tacacaatct actcagcatg cctgagcacg      1620
     ggcttatccc tatccaatgg aggagctcag ggattgtatt ccttccgaaa gcaggaaagt      1680
     gcagccacct gagtcccaag aactacagac cgagaagcct caccttgttt gtaaaaaaac      1740
     tgactggacc tacacaccag gaacgatggg ggagactcat gtcaaccaac cagcacgcgt      1800
     acaccgaatg gaaatcggtg gagacggcac tacactcgct agtagctacc atcgagaagg      1860
     cactctacaa caaggaatat gccctaggag tgtttgtaga cgtatccggc gcattcaaca      1920
     acgtaagcac agacgagata atggaccgct tagaagcgaa caatacgcac cccgccatca      1980
     acctctggat aagaaacctt ctaagttgca gacgggtaca atcagaatgg ggcaccgcct      2040
     ccgtggcgaa tgtcctctca cccctactat ggaatatggt ggttgatgac ctatcaagag      2100
     attcgagagg agagccccga aaaaaacagc ctacgcagac gacataggca taattttgac      2160
     gggagtttgc cctgcgaccc tcagatccgt aatggatcaa ctctcaggga gacatgtgag      2220
     tgggagggaa aggttggacc cagtatcaac gcggacaaga cggacctcat tctcttcaca      2280
     agagatacaa ggtgccgaaa tggatccccc caaaaatcaa tggaaccagg ctgatcccaa      2340
     aaacacaggt caaatacctc ggcttagtaa tagacagaaa gctgacatgg agatccaatg      2400
     tagaggaacg ggtgaaaaag gccaccgcag cgttatacgc atccaagtca cctgccgtaa      2460
     tgcactagtt ctacatctcg gtagtgcgtc ctactttgct gtatggagta cttgtgtggt      2520
     ggcaagctac taaaaagaag acatactaca akctaatgga gaaaagctct gcatctcgga      2580
     ggcgatgagg tcaaaacccc agaaaagcac ttcgaactat actcggaatt gatcgtcaag      2640
     ccaaactgat ctgatcaaac gcttttttgg gacctgagga ctggaaagaa atccaggaac      2700
     agaaccaaca catcaatata tacaccgacg gctccaagat ggaaggagga gtaggagcgg      2760
     gcttatactg cctgatccag agatcaggct atcctataag ctaccgaccc aatgcagcat      2820
     aa                                                                     2822
//
ID   LOA-3_DPer  repbase;    DNA;    INV; 5642 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.08, Created)
DT   09-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   LOA non-LTR retrotransposon from Drosophila persimilis.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-3_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5642
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1665-1665 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. ~97% identical to TRIM from
CC   Drosophila miranda.
XX
FH   Key           Location/Qualifiers
FT   CDS           484..1929
FT                 /product="LOA-3_DPer_1p"
FT                 /translation="MPNNKHIKTNKANTAKELGTPLKVPEGQANPSAPAPG
FT                 KPGPKKTGKETESVHRLQAAAAARGGPKSQSGPSKSGGSKGEADTGVAAKQ
FT                 SVIAAGKRTGTEEPLGAPAGSVSAPRGGKPSYQDRRRAAFILSNEDPNFKA
FT                 SAEGKEQRLWACSILPLFQPAKAGKGAAKAPNKRQRSAEDPANQPGQAQQA
FT                 KRVKTHLTNRSFAEVARGKTLIGVLDRGAEDGHVPRDKWHLVENELQDRFL
FT                 LELEENGGPPPKCEDAGWHQGKVKAIACQDARSAALYMKAVAALKEVYPGA
FT                 KLEAVKWEDVPSRPRARAWVSAKPAEPEKILRLLQVCNPHLPTADWKVAKV
FT                 EDIQGQRRQIILVLNEESIDLLAKSDGVVDYGYKKVTISTYKSDRKGRQAE
FT                 VEPDPELPEIPKEGASCEEDNPASDAASLMSDDILDDYAFDESDLARGLSH
FT                 IIVGEEPESPDSDPEVTMVEASLRNVVDAPADKPPPL"
FT   CDS           1892..5485
FT                 /product="LOA-3_DPer_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSLTLLQINLHHCKAACAALLLHLAKGGADIVLIQEP
FT                 WILGNRVSGLXTSDYKLYVAETAGKTRTCILAKRELHLFLLPNFSNEDHTA
FT                 VSLEGQERSLRICSAYMGHEQPDPPPHAPLRALIADCSAKDIGLIVGCDAN
FT                 AHHCQWGSTDTNERGEYLFSYLLTTQMVLLNRGSDPTFIIKNRKEVLDLTL
FT                 ASHEIQRNIVSWRVLEEHSFSDHRYVETVFSFSVPKPVRFRNIRRTNWTRY
FT                 SDYLCRVLPEPPSEEEFSTEATTRLLKIFTDACNKALDKACPSGKNRGRKK
FT                 PEWWNPKLGELRKASRRLFNKAKAENVEQNWAEYKASLSTYNKELRKAKRA
FT                 SWRKFCSEIESNSEASRLRRVLSKTTPTLGYLKNTDQSWTTSSEESLNLLL
FT                 NTHFPGCDENRPNYLAPPSVASNAILRLLSQENISWAIRSFKPYKSAGPDG
FT                 IFPAQLIHAGHKAINWLKIIYEGIFSHGCIPDTWLQTKVVFIPKAGKPSHT
FT                 APKDFRPISLSSFLLKAMERLLGLHLTACIPSSLISDSQHAYRKGRSTETA
FT                 LHSITSIIEASLNFKEYTLVAFLDIEGAFNNILPTAITGALTDLGVDSRTV
FT                 SLIDQMLQCRTVEASLGTSTCTRFVSRGTPQGGVLSPLLWNVAVNTLLREI
FT                 EGGGCRVVAYADDVAIAFSGKFPQTLCECMTSTLTKMSKWADKCGLGVNPS
FT                 KTELVLFTRKYKVPALIPPRLCGETLVFSNNAKYLGLILDRKLDWKLSIED
FT                 RVKKATVALYTCRKAIGLKWGMTPYIVRWLYTAIIRPIMLYGVVVWWPALD
FT                 KRTGLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLLPVDLMGKKVATLS
FT                 ALRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVSIPSR
FT                 EDWEMGEPGPANAVHFYTDGSKLDGRVGGGVYCSELNISHCFRLPDHCSVF
FT                 QAEVEAIKEAISIVSKLLLDTHLVCVFSDSQAAIKALGSISSNSATVNDCR
FT                 RSLHEIAEQLDLFLIWVPGHRDIEGNDAADELARQGTTIPLLSEREQVAMP
FT                 LATCRLLTHELFEQNANRRWQQTVSCKVSRLIWPYRSKKRSAELYKLSRAQ
FT                 CSAVTRAITGHWQIGTHASRLSIPHNDFCRSCRDEEEEESVPHFFCHCPAL
FT                 GNRRLRILGAAFLTDISDLSVIKPGTLSKYIQATGWDCP"
XX
SQ   Sequence 5642 BP; 1417 A; 1599 C; 1549 G; 1075 T; 2 other;
     ggccgtcagc catcgggtgc tacaggggga caaacggatg acgggtcggc tcgcacaact        60
     gtgaactcgg aactgaggcg cagccgctcc ggttagtaat acccggtgcg gtctgcgtct       120
     cacacccccc ctaggacaca gagggttgcg agcgaaccgt cacccgccgt aactgtgcac       180
     accggtggaa gtgcgactat actctccccg tgagggcggc tggaaacagg tcctagcacg       240
     gtcatgtctc tgctaggatg ctggcgaatg gtagtcgggc ggagagaaga aaactctcag       300
     tgaaattacc ccaatccaag gtgacactgt tatatgccga gggatgcatg gccggggggg       360
     tgcccggtcg ctaatatgcg gactctggat acctgccgac ctccagttta aatcaggctt       420
     cccggggcaa gcgggctatg cctcgggtga ccatcccctt cccgcctact cgtgggaaca       480
     actatgccaa ataataaaca tataaaaaca aacaaagcca acaccgcaaa ggagctcggt       540
     actcctctta aagtaccgga gggacaagcc aatccctctg caccagcgcc tgggaaaccg       600
     ggtccaaaga agacggggaa ggagactgag tcggtccacc gtcttcaggc agcagccgca       660
     gcgagggggg gcccgaaaag ccaatcgggt ccttccaagt cgggtggctc caagggcgaa       720
     gcggataccg gggtggctgc caagcagagc gtaatcgcgg ctggtaagcg caccgggacc       780
     gaagaaccct tgggagcccc ggcgggcagc gtctctgcac cacggggagg aaagccgtcg       840
     taccaggaca ggagacgagc ggccttcatc ctgtccaacg aagacccgaa tttcaaggcg       900
     tcagccgaag gaaaggagca gaggctgtgg gcctgctcaa tccttcccct gttccagcca       960
     gccaaagccg gaaagggcgc agccaaggcc cccaacaagc ggcaacgctc agcggaggac      1020
     cccgcaaatc agccaggtca agcccagcaa gccaagcggg tgaagaccca cctcacgaac      1080
     cggtcgttcg ctgaggtggc gaggggcaag accctgatcg gtgtcctgga caggggcgcc      1140
     gaggacggcc atgtcccccg cgataagtgg cacctggtgg agaacgagct ccaggaccgg      1200
     ttcctactgg aacttgagga gaacggcgga ccaccgccaa agtgtgagga cgcagggtgg      1260
     catcaaggca aggtgaaagc catcgcctgc caagacgctc gctctgcggc cctctacatg      1320
     aaggcggtgg cggccctaaa agaggtctat ccaggggcga aactggaggc cgtgaagtgg      1380
     gaagatgtcc ctagtcgccc gagagccaga gcgtgggtct cggctaagcc tgcagagcct      1440
     gagaagatcc tcaggttact gcaggtctgc aacccccacc ttcctacagc cgattggaag      1500
     gtggcaaagg tggaggatat ccaagggcag aggcgccaga ttatcctcgt cctaaatgag      1560
     gaatcaatag atctcctcgc aaagtcggac ggtgtagtgg attatggcta taagaaggtc      1620
     accatatcca cgtacaagtc cgatcgcaag ggcaggcaag cggaggtcga gccagacccg      1680
     gagctgccgg agatcccgaa agagggggcc tcgtgcgagg aagataaccc ggcgtcggat      1740
     gcggcgtcct tgatgtcgga cgacatcctg gacgactacg cgttcgacga gagcgaccta      1800
     gccagaggtc tcagccatat cattgtcggg gaggagccgg agtcccctga cagcgatcca      1860
     gaagtaacaa tggtggaggc gagcctcagg aatgtcgttg acgctcctgc agataaacct      1920
     ccaccattgt aaggcagcat gcgctgctct actgctccac ctggccaagg gtggagccga      1980
     catagtactc attcaggagc cctggatcct cggaaacagg gtctccggtc tgagkacttc      2040
     tgactacaag ctatatgtag ctgaaaccgc aggtaaaact cgtacctgca ttcttgcaaa      2100
     aagagagttg cacttatttt tgctcccaaa tttcagcaat gaagaccaca ccgcagtgag      2160
     cctcgaaggc caggagcgct cactgaggat ctgctccgca tacatggggc atgaacaacc      2220
     agacccccct ccacacgcgc ctctccgggc tctaatcgca gactgctcgg ccaaggacat      2280
     cggcctaatt gtggggtgtg atgccaatgc acatcactgt cagtggggaa gcactgacac      2340
     aaacgaaagg ggtgagtacc ttttcagtta cttactgacc acacagatgg tcttattaaa      2400
     ccggggtagt gatcccacct ttatcattaa aaaccgcaag gaggtcctgg acctcacgct      2460
     tgcctctcat gagatacagc gtaacattgt atcctggagg gtcctggaag agcactcctt      2520
     ctcggaccac aggtacgtgg aaactgtctt ctccttctca gtgccgaagc cagtccgatt      2580
     ccggaacatc aggcggacaa actggactcg gtattctgac tacctctgtc gtgttctccc      2640
     tgagccccca tctgaggagg agttctccac ggaggccacg actcgtcttc ttaagatctt      2700
     taccgacgcc tgcaataagg cgctcgacaa agcatgcccc tctggcaaga acagaggccg      2760
     gaagaaacct gaatggtgga atccgaaact gggtgaactc cggaaagcct cccggagact      2820
     cttcaataaa gctaaggctg aaaacgttga gcaaaactgg gccgagtaca aagccagtct      2880
     gtcaacctac aacaaagaac ttagaaaagc caaacgcgcc tcctggcgta agttctgcag      2940
     cgaaatcgag agtaactcag aagcctcacg cttgcgcaga gttctctcga agacaacacc      3000
     caccctgggc tacttgaaga acaccgacca gtcgtggact acgtccagcg aggagtcgct      3060
     aaatcttctc ctaaataccc acttccctgg ctgcgatgaa aacagaccca actacctcgc      3120
     gcctccttct gtcgcctcaa atgccatcct gagactgcta agccaggaga acatttcctg      3180
     ggcgatcaga agttttaaac cctacaagtc cgcggggcca gacggcattt tccctgccca      3240
     actgattcac gcgggacaca aagccattaa ctggctcaaa ataatttacg agggaatctt      3300
     ctcccacggg tgcattcctg acacctggct tcagaccaaa gtcgtattca tacccaaggc      3360
     aggcaagccc tcgcacactg ccccaaaaga tttcagaccc ataagtctat cgtcttttct      3420
     tctaaaggcg atggagcggc tcctggggct gcatctaacg gcgtgcattc cgtccagtct      3480
     gatctcagac tcccagcatg cctatcggaa gggaagatcc accgaaacgg ccctacactc      3540
     gatcacatcg atcatcgaag cgtcccttaa ttttaaggag tacaccctag tagccttcct      3600
     cgacatagaa ggcgccttta acaacatcct tccgaccgcc atcacgggcg cactgacgga      3660
     tctgggcgtt gactccagga cggtgagctt gatcgatcag atgctacaat gcaggacggt      3720
     tgaggcatca ctggggacgt caacgtgtac cagatttgtc agcagaggca caccgcaggg      3780
     cggagtcctc tcgcccctcc tatggaacgt ggcagtgaac acactgctgc gggagataga      3840
     ggggggtggc tgccgcgtgg tggcgtacgc ggacgacgtt gccatagcat tctccggaaa      3900
     atttccgcag acgttgtgtg agtgcatgac aagtactctc acgaaaatgt cgaaatgggc      3960
     agacaaatgc gggttaggcg tcaacccgtc taaaacggaa ctggtgcttt tcactaggaa      4020
     gtacaaagtt ccggcactga ttcccccaag actatgtggg gaaacgctag tcttcagcaa      4080
     caacgccaag tatcttggcc ttatcctcga tagaaagctc gattggaaat tgagcataga      4140
     ggatagagta aagaaggcca cagtggccct ctatacttgc aggaaagcca tcggactaaa      4200
     atggggaatg accccatata tagttcggtg gctctacacc gccatcatac gaccaatcat      4260
     gctctatgga gtggtggtat ggtggccagc cttggacaaa aggacaggcc tcaataaact      4320
     cagcagagtt caacgcatgg cagagctatg cataaccggc gggctacgca ctactccagg      4380
     ggaagccctg gatactgtgc tggacctcct cccggttgat ctcatgggaa agaaggtggc      4440
     aacactttcc gccctccgaa tgagagaagc cagactgtgg aaagcatccg cggttgggca      4500
     ctcgggaatc ctgatgagac tcccgcaatt accagagagg acagattact gtatccccag      4560
     tgatcacctc tcgacgccct tccaggtatc aatcccatct agggaggact gggagatggg      4620
     cgaaccaggg cctgcwaatg cggtccactt ctacactgat ggctcaaagc tagacggccg      4680
     cgtgggaggc ggagtctact gcagcgagct gaacatcagt cattgcttca ggctcccgga      4740
     tcactgtagt gtgttccaag cggaggttga agccatcaag gaggccattt cgatcgtctc      4800
     caaactactc ctagatacgc acttagtgtg cgtcttctcg gacagccaag cagctatcaa      4860
     agctctaggc tcaatatcgt cgaactcagc gactgtaaat gactgccgca ggtctctgca      4920
     cgagatcgca gagcagttag atctcttcct tatatgggtc cccggccaca gggacatcga      4980
     ggggaatgac gccgccgacg agctagccag gcagggtact acgattcctc tcctatcgga      5040
     gagggagcaa gtagcgatgc ctttggctac gtgcaggctc ctaacgcacg aattgttcga      5100
     gcaaaatgcc aataggagat ggcagcaaac cgtttcctgt aaagtctcaa gattgatatg      5160
     gccatatcga tcgaagaagc gctcagcaga gctgtataaa ctcagcagag cacagtgctc      5220
     tgcagttact agagccatta cgggacactg gcagatcggc actcacgcct ctagactgtc      5280
     aatccctcat aacgacttct gcaggagttg tcgcgacgag gaggaggagg aatcggtccc      5340
     ccacttcttc tgccactgcc cagcccttgg aaatcgtcgt cttcgtattc tcggggccgc      5400
     tttcctcacg gacatttcgg acctatccgt aatcaaacca gggaccttgt ccaaatacat      5460
     ccaagccacc ggatgggact gcccttaacc tgcagtagta tgctctcacg gttcgggcaa      5520
     cgcgaagggg cacatgccca tgcggcaaca caacggacct gtttataggt ccaagtgagc      5580
     ttgggggcgg gaggctctta tccccccccc tcccggctac cgctttaacc taacctaacc      5640
     ta                                                                     5642
//
ID   Loa-3_DTa   repbase;    DNA;    INV; 5386 BP.
XX
AC   .
XX
DT   10-JUL-2012 (Rel. 17.08, Created)
DT   10-JUL-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5386
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1715-1715 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..1571
FT                 /product="Loa-3_DTa_1p"
FT                 /translation="ARVPYRKPHHATSTPAKASGPRSQVAPTNRKGQSKTP
FT                 TNAGAAHQPNQPEGGARADLVVSTRAKEFKRTPPNQAGPLERKKAYRILKR
FT                 LATNPIREDQTSKEDYQKIQEDIAWAKAVIPDFDPAKIPSDSNKRERSIEV
FT                 AQPASKKAKTTSRGTWSRSFAEVVKDRKIIGVIDQNDEGGRIPRNQWGQVR
FT                 RALATVALKVLDENPGPPPDCTDAGWYQGNVKLIACEDERSAALYKAAITK
FT                 VGEVYPGAKLAVCEAADIPSRPRARVWLPSEPSEPEAILSLLTRFNPKLPT
FT                 EGWKVVKVEKTERVTMNVVILLNQACLEPLAASQNRVNYGFDKVQLRIYDT
FT                 DKLAADNLAACASYEPPSDDEMEHEEALHTGYVSTDSELTRL"
FT   CDS           1640..5266
FT                 /product="Loa-3_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase, non-LTR RNase HI."
FT                 /translation="RVPSPSPTRKMVQYLQINLHHSKAASAALLTRLETGK
FT                 IDIVLIQEPWIVGDNICGLSTPTYKLFHIKGKGKPRTCILTKTHFNTFLIP
FT                 QFSEGDLTTVRLELNSHTHHTISSFYLAHDQEGPLPNIITQQLIHTHSSKE
FT                 LILGGDANSHHTQWGSTNTNERGELLYDYLLQSNLFICNKGNDPTFITRNR
FT                 REVLDITLISDTLLNHLEEWKVGAEHSFSDHRYVEFTISLECPPPESIRNL
FT                 RRTNWGYYKKLLDRNLNTPPTRVLDSHELENLVNTFTDICGEAIKKACPSR
FT                 TVKTKHKPPWWNTTLAALKSDCRSHFNRAKYSNSEASWNTYHTKLSHYKKE
FT                 IRASKRREWANFCSSIESTAEASRLRRILAKSPVTVGYLKTNEDTWTGNSQ
FT                 ETLELLLDTHFPNNTQAVEDLHLVESLDEQSIDNISNPERIKWAINSFKPF
FT                 KSPGPDGFFPAQLQRTIDTTLPWLTVIFHGCLALNHIPSRWLDIKVIFIPK
FT                 AGKPSHTSPKDFRPISLSSFLLKTLERLIDTHIRLTTNPSLLSNAQHAYRK
FT                 GRSTDTALHSLVSYIERGFHNKEYSLAAFLDIEGAFNNVTPTAITGAMTEL
FT                 GIERPIVGLIHTILTSRVVYSTMGSAQSTRNVSRGTPQGGVLSPLLWVIVV
FT                 NKLLSLLEEAGTKVVAYADDVVILMQGKFPQTLCNLMETALSSLSRWTARC
FT                 GLGVNPEKTELVLFTRKYKIPSLTLPKLLQTRLTLSNQAKYLGVILDKKLL
FT                 WAENIADRTRKAAIALFACKKAIGRKWGFSPVIVHWLYTAIVRPILLYGII
FT                 VWWHSLEKNCNLKNLHKIQRSAELCISGALRTTATEALNTILDLEPLDLLA
FT                 KSWASATALRLREASAWSTGSSGHSSILTNQRYIPHRTDYVPPIVNFEKTY
FT                 KVLIPTRTEWDHLPHQIENAVNIYTDGSKLNLQTGGGVFSPELDIKVSFRL
FT                 PDHCSVFQAEVMAIQEAMSYLDTTKHCNTDIFIFSDSQAALRALDSYSTNS
FT                 LTISECRKSLNEMATHLRISLIWVPGHRNIEGNCIADELARQGTTTDILRD
FT                 KDTVGMPIATCKLLLKQRLYTLSNNRWNTISTCHTSRLTWGNYNPKRTKTL
FT                 LQCNRADISTLINALTGHCLLGTHARRLGLSSYDYCRSCKQIEEEENIEHL
FT                 LCFCPAHNLKRFQTLGSYTLPNLAAIQGTSIPKLLCFLKRTNWFEKPNNP"
XX
SQ   Sequence 5386 BP; 1623 A; 1528 C; 1189 G; 1042 T; 4 other;
     gacagtcagc gggtatctgc gccgtagcag tgccgacgtc gcgcttgtgc tgccgcctcc        60
     gacaaatagc tcacacaaac ccactcccca cacataagcc tacctcttcc ctattccccc       120
     aacaatcatc tcaccccggg ctggactacg gtgtcactcg aaccgtgccg agagtcaatc       180
     tggctgggag cccgagtcaa caaataactc agtctctaac ggtgggctca ggcaagtggc       240
     gaccgcctgt tctaaccagc cttacccggg tacagcggat ctctgcccgg gtggacctgt       300
     cctttctccg cagctcgtgg gaacaagcat ggagaagtta aataacaaaa aaamaataaa       360
     cgcagagtcc gacactctta aaaagtcgga agtcaacacc aaagacgacc aaatgagcaa       420
     gggtgccgta ccgaaagccc catcatgcaa catcgacacc agccaaggcc agcggaccac       480
     gcagccaagt agccccaacg aaccgcaagg gccagtccaa aacacccacc aacgctgggg       540
     cggctcacca gccaaaccaa ccggagggag gtgcaagggc tgaccttgtg gtaagtacca       600
     gggccaagga gtttaagcgg acaccaccta accaggcagg accgctcgaa cggaagaagg       660
     cttaccgcat cctaaaacgt ctggccacca accccatacg ggaggatcag acttccaagg       720
     aggactacca aaagatccag gaggacatag cctgggcaaa ggcagtaatt ccagacttcg       780
     accccgcaaa gataccaagc gacagcaaca agcgggagag gtcgatcgaa gtggctcaac       840
     cagcgagcaa gaaggccaag acaaccagcc gcggcacgtg gtctagatcc tttgccgaag       900
     tggtgaagga tcggaagatc atcggcgtca tcgaccagaa cgatgaaggc ggcaggatcc       960
     caaggaacca gtggggtcag gttaggcggg cacttgcgac ggtggccttg aaagtgctgg      1020
     acgaaaaccc aggaccacca cctgactgca cagatgcagg gtggtaccag ggcaacgtaa      1080
     agttgatcgc ctgtgaggac gagagatcgg cagcgctcta caaggctgcc attaccaaag      1140
     ttggcgaggt ctaccccggg gccaagctag ccgtctgcga ggcagcggat atcccgtcca      1200
     gaccaagggc gagggtgtgg ttgccgtctg aaccctctga gccagaggct attcttagcc      1260
     tcttgacaag gttcaacccc aagctcccaa cagaaggttg gaaggtggtg aaggttgaga      1320
     agactgaacg cgtcaccatg aacgtggtga ttctcctcaa ccaggcatgc ctggaacccc      1380
     tggcagcatc acagaaccgt gtcaactacg gtttcgacaa ggtgcaactc cgcatatacg      1440
     acacggacaa gctagcggca gacaatctgg ctgcatgtgc gtcctacgaa cccccgagcg      1500
     acgacgagat ggagcacgag gaggccctcc acacagggta cgtgtcgact gattcggagc      1560
     tcacgagact ctgaagcagt tgagcaccca tgacacggcc gagggcgcag tgtgctccag      1620
     gacattgtgg aggaagtaga gggtacccag cccgagccca acccgcaaaa tggtgcagta      1680
     cctacagatt aatctgcacc acagcaaggc agcatctgct gccctcctca cccgcctgga      1740
     aacgggcaaa atagacatag tcctcatcca agagccatgg attgttggag acaacatctg      1800
     tggcttatca acccccacat acaagctttt tcacattaag ggtaagggta aacctaggac      1860
     ctgcattctc actaaaacac actttaacac atttctaatc ccacagttta gcgaaggcga      1920
     ccttaccacg gtcaggctgg agctaaactc acacactcat cacaccatat catcgtttta      1980
     cctggctcat gaccaagagg ggccattacc aaacatcata acacaacaac tcatacacac      2040
     acactcatct aaggaactca tcctgggtgg agacgccaac tcacaccaca cacaatgggg      2100
     aagtacaaat acgaacgaaa ggggtgagtt actttatgac tatctccttc aatccaactt      2160
     attcatctgc aacaaaggta atgaccctac tttcatcact agaaatagga gggaagtttt      2220
     agacattacc ctgatatccg acaccctact caaccatctt gaagagtgga aagtgggagc      2280
     cgaacactcc ttctccgacc accgatatgt agaatttaca atatctctag aatgccctcc      2340
     ccccgagagc ataagaaatc taagacgcac taactggggg tactacaaaa aactcctcga      2400
     tagaaaccta aatactccac cgactcgcgt actcgacagt catgaactag aaaacctagt      2460
     caatactttc actgacatct gtggtgaggc cattaaaaag gcctgcccaa gcagaacagt      2520
     caaaacaaaa cacaaaccgc cttggtggaa cactaccctg gcggccctta aaagcgactg      2580
     cagaagtcat tttaacagag ctaaatatag caacagcgag gcttcctgga acacgtacca      2640
     tacgaagcta agccattaca aaaaggaaat tagagcatca aagcgaagag aatgggccaa      2700
     cttctgcagt agcatagaat ctacagcgga agcgtccagg ctcagaagaa tcttagcaaa      2760
     atctccagta accgttggat acctaaaaac caatgaagac acctggacgg gaaacagcca      2820
     ggaaacttta gaactcctgc tagacaccca cttccctaat aacacgcaag cagtagagga      2880
     cctccattta gtggagagcc tcgacgagca gagcatagac aacatttcaa accctgaacg      2940
     catcaaatgg gcgattaact cctttaagcc cttcaaatca cctggccctg acggcttttt      3000
     ccctgcacaa cttcaacgga caatagatac tacccttcca tggctgacgg tcatattcca      3060
     cggctgtctg gcactgaatc acataccatc cagatggctg gacattaaag taatatttat      3120
     accaaaggcc ggcaagccct ctcacacctc tccaaaggac ttccgtccaa taagcctctc      3180
     ctccttcttg ttaaagaccc tggaaaggct aattgacaca cacatcagac taactaccaa      3240
     ccctagttta ctctcmaatg cacaacatgc gtaccgtaaa ggcagatcaa cagatactgc      3300
     cctwcactcc ctagtatctt atatagagag agggttccat aacaaggaat actccctggc      3360
     agccttccta gacatagaag gcgctttcaa caatgtcacc ccaacggcta tcactggcgc      3420
     tatgacggaa ctaggcattg agcgtcctat agtgggactc attcacacca tactcaccag      3480
     tagggtagtg tactccacta tgggatcagc acaatcgact aggaacgtta gtagaggaac      3540
     accgcaaggc ggtgtacttt cccctctgct atgggttata gttgttaata aacttctatc      3600
     acttctagag gaagcgggaa caaaagtggt ggcctatgcg gacgacgtgg ttatcctaat      3660
     gcaaggaaaa tttcctcaaa cgctatgcaa cctgatggag acagccctat cctcactctc      3720
     aaggtggaca gcgcgctgcg gactgggtgt caacccagaa aagacagaat tagttctatt      3780
     tacaaggaag tataagatac caagtctaac tctcccaaaa ctactccaaa ctcgccttac      3840
     tcttagcaac caagcaaagt atttaggcgt catcctagac aagaaactcc tctgggcaga      3900
     gaacatcgcg gaccgcacac gcaaagcggc catagcactc tttgcttgta aaaaagctat      3960
     agggagaaag tggggcttct ctcccgtaat agttcactgg ctatacactg caatagtcag      4020
     acccattctc ctctatggaa tcatcgtctg gtggcactcc ctagaaaaga attgcaacct      4080
     caagaatctg cacaagatcc aaagaagcgc agaactctgc ataagtgggg cgcttcgcac      4140
     aaccgccact gaagcattga atacaattct tgacctagaa cctctagacc tgcttgccaa      4200
     aagctgggca tcagcaacgg cgctgaggct ccgcgaagcg tcggcctggt caacaggctc      4260
     atcaggtcac tccagtatac ttacaaacca gcgttatata ccacacagaa cagactacgt      4320
     cccacccata gtcaacttcg aaaaaacata caaggttctc atacccaccc gcacagaatg      4380
     ggaccacctc cctcaccaga tcgagaacgc cgtcaatata tacacggatg gctccaagct      4440
     taacttgcaa acaggagggg gagttttctc gcctgaacta gacataaaag tctcctttcg      4500
     actaccagat cactgtagtg tcttccaagc ggaagtgatg gcaatccagg aagccatgtc      4560
     ttacctggat acaacaaaac actgcaacac agacatcttc atmttttcgg acagtcaagc      4620
     agccctcagg gccctcgact cctactcaac taactcactt actatctctg aatgccgcaa      4680
     atctctgaac gagatggcca ctcatctcag aatcagcctc atttgggtgc ctggacaccg      4740
     taacattgaa ggcaactgca tagcggacga actagcaaga caagggacaa ccaccgacat      4800
     ccttcgcgat aaggacacgg tgggcatgcc catagctacc tgcaagcttc tcctcaagca      4860
     aagattgtac accctctcca acaaccgttg gaatacgatc tcaacatgcc acacctccag      4920
     gcttacctgg ggtaactata atccgaaaag aaccaaaacc ctcttacaat gtaacagggc      4980
     agacatttcc accttaatta atgccctcac gggccactgt cttttaggga cacacgcgcg      5040
     caggctagga ctcagcagct acgactactg tcgcagctgt aaacagatag aagaagagga      5100
     gaacattgaa cacctcctgt gcttctgccc agcacacaac ctcaaacgtt ttcaaacact      5160
     aggaagctac acgcttccaa accttgcagc catacaaggc accagcatac ccaaactcct      5220
     ttgttttctg aaaagaacca actggttcga gaaacccaat aacccatgag ctagggaaat      5280
     ggatcttttc tgagatcata tggtatcaca aggggcccat ggcggcctaa gtgaggggat      5340
     tagtctataa tccccaacca tgctcaccta acctaaccta acctaa                     5386
//
ID   Loa-3_RPr   repbase;    DNA;    INV; 4505 BP.
XX
AC   .
XX
DT   21-FEB-2014 (Rel. 20.10, Created)
DT   21-FEB-2014 (Rel. 20.10, Last updated, Version 1)
XX
DE   LOA-type non-LTR retrotransposon: consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4505
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3477-3477 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           448..1644
FT                 /product="Loa-3_RPr_1p"
FT                 /translation="MSNYNEKLDCKTTASGVPQVTEEGTQAGIKPKGERVK
FT                 GPKTDLVGLQGTSSGGSGNADPPGKEAVTGVSQKLKGIHITPRKPSGAQRR
FT                 KLAKLKVAEAGKEWIPGKDWRERGKGQKTSRVVNQPGGQGIIPSTSSDGAG
FT                 IGKEARVVSSLPPETSQTPKRPRSEVSTPSSASGRAVAQGSKRVKLPEEGP
FT                 TGSFRDALCAQKMAIVLDSYPNDFLSEEQADLLQQKLVEEICSEKCTGSIG
FT                 PRFRSCFLSKGALILACEGEDARLWLERVVPELRLGEGAKLRVGPARDIVR
FT                 AAKVAMWVPGALKNTTPSVILDKLLVQNEGLDIAEWRLLNRKIEPKGQTLV
FT                 FEISEQALSRLKGTNFEVFLGLEVVRLRVVSKTSTSAAAHDPPESMEVASG
FT                 EPPSQ"
FT   CDS           1595..4504
FT                 /product="Loa-3_RPr_2p"
FT                 /translation="MTPLNRWRLLQVNLHHSRGASAALVKFIEEEDIAIVL
FT                 IQEPWLVRGRIAGLGEAKGKIYYDHNLDNPRTCIFVRENITSLLLMEFCFR
FT                 DQTAIKVKLHVDKEAREIVVASTYLPYDSTVPPPSEEMQYLTNRCRERGLQ
FT                 LLIGCDANSHNEVWGSSGTNQRGKYLLDFISANNLHVINEGEEPTFHNSIR
FT                 REVIDLTLGTNFVSTLVRNWHVSGVPSLSDHMYIRFDIGFDCKEVVTYRNP
FT                 RRTDWDSFRRDLSANIGTVNNNFRTRMDIDEAAERLQGVIEEAXWENCAET
FT                 VITSNRKVGWWNNQLKELRSKVRKLFNVAKRRGTWKEYREALTSYNIAIRK
FT                 AKRDAWRKLCEEVEMTSEGARLHRIISKSPGGALGTIRNEEGIFTKSGRDT
FT                 LECLMRTHFPDSKVIESGQHGEDTLGPDRCRGTRETWAVAKYCITYNKVVW
FT                 AVNYFKPYKSPGPDGIFPALLQQGKDLITPILCRIMRACLALNHVPRAWRP
FT                 VKIIFIPKPGKRTHTQAKEFRPISLTSFMLKVLEKLIDMYIKEVALKQRPL
FT                 HANQHAYQTGKSCETALHCLVKELEASVFCKETAVGVFLDIEGAFSNTTYS
FT                 SIALAMDRHGVESTVSRWICNMLSSRRITATLFGESLELTTVRGCPQGGVL
FT                 SPLLWCMVVDELLEVLDLRGFSVLGYADDISVVVRGRHETIVAELMQEALK
FT                 VIENWCRRVELSVNPSKTTLVPFTRRRXKESYKNLRFFGKTLDVSGEVKYL
FT                 GIVLDTRLTWKAQIERVTLRAKQALCGITRTCGKTWGLSPKMTHWLYTRTV
FT                 IPIITYGSVVWWRKTEQQTAIKALARVQRLACLMITGAFSSTPTAALEVLL
FT                 GLAPLQYVIQAEARASAYRMASNGQWRRXSSCIGHMSISDKVDPGPVIDMA
FT                 GDSICPKYSFETPFQVCIKPRTEWRVNWTDQYRKGGIWFTDGSKMDCGTGS
FT                 GVYGVKPEVLIERSL"
XX
SQ   Sequence 4505 BP; 1148 A; 962 C; 1309 G; 1081 T; 5 other;
     ggtccacaag gtcgttgtga ctccggttga aagctttatg cgattccgga ggtcaggcgg        60
     caagtcaacc cctcttcctc gtagtgtgga ctggtaacgc ggcatttgtt gcggctaacg       120
     gggctctgac gggtcggtgt gtctccccca tcggcttccc tccttctatc tccccatcct       180
     ttaatccttt cttgtacccc tactgccaat ccttgcgtct atccctttat cctttgatcc       240
     tatctctccc tttcctgcct cttgaatccc tacccaagcc gagatgggga ctcgtgtcga       300
     ggctgaatgc gtacagggta gtaaaatata tgtgcggtaa cgatcacctt ggggcaccgg       360
     gcgaaacccc attgtattgt agccttcctg tggcagtggg ggtctgtcac aggtgaccgt       420
     ctatccccca cttctcgtgg gaacaagatg agcaattaca atgaaaaact agattgtaaa       480
     acgacagcca gtggtgttcc tcaggttact gaggaaggaa cacaggctgg gataaaacca       540
     aaaggggaaa gagtgaaagg ccctaagacg gatttggtgg gactacaggg aacttcttct       600
     ggagggagcg gcaacgcaga ccctccaggt aaagaggcag tcactggagt ctcccagaag       660
     ttgaagggta ttcacattac acctaggaag ccgagtggtg ctcagcggag aaagctagct       720
     aagcttaagg tcgctgaggc tgggaaggag tggattcctg ggaaggactg gagggaaagg       780
     gggaaggggc agaagacctc cagagtggta aaccagccag gtgggcaagg tataattcct       840
     tcgacctcct cggatggggc aggcattggg aaggaggcga gagtcgttag ttctctccct       900
     ccagaaacaa gtcagacccc taagaggcct aggtcggagg tcagtactcc aagttcggcg       960
     tcggggaggg cggtggcgca gggtagcaag agggtgaaac tcccagagga agggcctacg      1020
     ggctctttca gggacgctct ctgcgctcaa aagatggcca tcgttcttga ctcctatccg      1080
     aatgactttt tgtcggagga gcaagcggat cttcttcagc agaaattggt ggaggagatc      1140
     tgtagtgaga aatgtactgg cagcatcgga ccccggtttc ggagctgctt tctctccaaa      1200
     ggtgcactca ttctcgcttg cgagggtgag gatgcgagac tttggttaga gagggtggtt      1260
     ccggagctcc ggttgggtga gggagctaag ctgagggtgg gtcctgccag agatatcgtg      1320
     agggcggcta aggtggctat gtgggtacct ggcgctctca agaataccac tccgtccgtt      1380
     attttggaca agctgctcgt tcaaaacgag ggcttggata tagcggaatg gaggctccta      1440
     aataggaaaa tcgagcccaa gggtcaaact cttgtgttcg aaatatcgga acaggccctg      1500
     agtaggttga aggggactaa cttcgaggtt tttctaggac tcgaagtggt cagactcagg      1560
     gtagtttcga agacttctac tagtgctgca gctcatgacc cccctgaatc gatggaggtt      1620
     gcttcaggtg aacctccatc acagtagagg ggcgtctgca gctctagtaa aattcatcga      1680
     ggaggaagat atcgccattg tcctcatcca ggaaccctgg ctggtacggg ggcgaattgc      1740
     aggacttggc gaagcgaaag gtaagattta ttatgaccat aaccttgaca atcccaggac      1800
     atgtattttt gttagggaaa acattacctc tttactgcta atggaatttt gtttcagaga      1860
     ccagaccgca ataaaggtga agctacatgt ggataaggag gccagggaga ttgtcgtggc      1920
     ctcgacctac cttccatatg actctacagt ccctccccca tcggaggaga tgcagtatct      1980
     gaccaaccgg tgtagggaga gaggactgca actactgatt gggtgtgatg ctaattccca      2040
     taacgaggta tggggcagct caggaaccaa tcagagaggt aagtatcttc tggacttcat      2100
     tagtgcgaat aatttgcatg ttataaatga gggagaagaa cccaccttcc acaactctat      2160
     tcgtagggaa gtgatcgacc taactttggg aactaatttt gtatcgaccc ttgttaggaa      2220
     ctggcatgtg tcgggggtcc cctcactttc ggatcacatg tacattaggt tcgacattgg      2280
     gtttgactgt aaggaggtgg ttacttacag aaaccctagg agaacagact gggactcgtt      2340
     tagacgggat ctcagcgcaa acattggtac agtcaacaat aactttagga cccggatgga      2400
     cattgatgaa gctgctgaga gacttcaggg cgtcatcgag gaggcctnct gggagaattg      2460
     tgcggagaca gtgataacat ctaacaggaa agtaggctgg tggaataacc agctgaagga      2520
     gctccgcagt aaagttagga aactgttcaa tgtagctaaa agaaggggta catggaagga      2580
     gtaccgtgag gccctaactt cttacaacat agccattaga aaggctaaaa gagatgcttg      2640
     gaggaagctc tgtgaagagg tagagatgac ctcggagggg gctaggctcc atcgcataat      2700
     atcaaaaagt ccagggggtg ccctgggtac catcaggaac gaggaaggga tttttaccaa      2760
     atcggggaga gacacattgg agtgtctcat gagaactcat tttcccgatt cgaaggtaat      2820
     tgagtcagga cagcatggtg aggatactct gggacccgat aggtgtcggg ggaccaggga      2880
     aacctgggcc gtggctaaat actgcattac ctacaataag gtggtctggg ctgtaaatta      2940
     ttttaagccc tataaatccc cgggtcctga tggcattttc cctgcccttt tgcagcaggg      3000
     gaaagattta attactccta ttttatgcag gataatgagg gcatgcttgg cactcaacca      3060
     tgtccctagg gcatggaggc ctgtaaaaat tatctttatt ccnaagcctg ggaagagaac      3120
     tcatacccag gcgaaggaat ttagaccaat cagtctaaca tcgttcatgt tgaaggtgct      3180
     agaaaaactg attgacatgt atattaagga ggtggcttta aagcaacggc ctctgcatgc      3240
     caatcagcat gcctaccaga caggcaaatc ttgcgagaca gccctccatt gtctggttaa      3300
     ggagttggag gcttcggtat tttgcaagga gacagctgtg ggcgtgtttc tggatattga      3360
     gggtgccttc agtaacacta cctacagttc aattgccttg gcgatggata gacatggcgt      3420
     agagtccact gtttcaagat ggatctgtaa catgctatcg tcaaggagaa tcacagcgac      3480
     cctttttggg gaatcgctgg agttaacgac agttaggggg tgccctcagg ggggggttct      3540
     atctccgctc ctttggtgta tggtcgtaga tgagttactt gaggtgctag accttcgtgg      3600
     gttctcggtc cttggctatg cagatgatat ttctgtagtg gtcaggggta ggcacgagac      3660
     aatcgtggct gaactcatgc aggaagctct caaggttata gaaaattggt gtagaagggt      3720
     agagctttca gtgaaccctt ctaaaactac tctggttccc tttacaagga gaaggganaa      3780
     ggagagctac aaaaaccttc gattttttgg taaaactctg gatgtgtcgg gtgaggtcaa      3840
     gtatctgggc attgtcctgg acaccagact cacttggaag gcgcagatag agagagttac      3900
     actaagggct aaacaggccc tttgtggaat aactagaacc tgtgggaaga catggggtct      3960
     tagcccaaag atgacccact ggctctacac acgtacagtc atacctatca tcacctacgg      4020
     ttcagtggtg tggtggagga agactgaaca acagacggca attaaggctc tagcaagggt      4080
     gcagagactg gcctgtctga tgatcacggg ggcctttagt agcaccccta ctgcggcgct      4140
     ggaggtactn ctggggctgg ctccgcttca atatgttatt caggcggagg caagggccag      4200
     tgcgtacaga atggcgagca atgggcaatg gaggcgtatn agctcctgca tcggccatat      4260
     gagtatttca gataaggtcg accctgggcc ggttattgac atggcagggg acagtatctg      4320
     tcctaaatac agtttcgaga ctccttttca ggtgtgtatt aaaccgagga ctgaatggag      4380
     ggtaaactgg acggaccagt accggaaggg aggcatttgg tttaccgatg gctccaagat      4440
     ggactgtggg actgggtctg gagtgtatgg ggttaaaccc gaggtactca tagagagatc      4500
     tcttg                                                                  4505
//
ID   LOA-4_CQ    repbase;    DNA;    INV; 3908 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3908
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 151-151 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >88%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..3772
FT                 /product="LOA-4_CQ_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MKRFIQVNLHHAKGASAVLCRRFMKNNIDVGLIQEPW
FT                 INNGKIKGISAXMGKLLYDDSSPNPRAAMLVKNNTKFIPITEFISRDIVAI
FT                 QMEVPTVRGSTWVCIASAYFPGDTDEAPPADVTMFISYCKKMNKQFIVGCD
FT                 ANAHHTVWGSTDINSRGENLLNXITTNNIDICNNGDCPTFVTATRQEVLDL
FT                 TFCSXVISERVINWXVSDEISLSDHKQIEFEYNAGEMIVGKYRNPKKTNWD
FT                 AYKIXLNDYDFNSEDEIRTVXQLEKASSELIIAITDSYXASCPVQQRSSSR
FT                 EVSWWNEKLAVLRKGSRRLFNRAKKTGDWXSYKXALTKYNKEIKRSKRSDW
FT                 RRSCEKIEETPIVARLQKALSKDHSNGLGNLKKADGSFTKNASETLDLMMK
FT                 SHFPGSTEVTSGIDQAEGERLAKDWSVLAHNQACEIFTRSKVDWAVSSFKP
FT                 FKSAGTDGIFPALLQQGKDIINAKLTDIFRASIALGYIPKAWREVRVIFIP
FT                 KAGKRDKTSPKSFRPISLSSILLKTMEKILDDFVKRTFLTKFPLSNGQFAY
FT                 QSGKSTITALNCLVSKIEKSLKAKEVALAAFLDIEGAFDNASHSSMRSAME
FT                 ARGFGSCIIKWIEAMLIEREISADLGGXRLVIRPRRGCPQGGVLSPLLWSL
FT                 VVDDLLKKLASLGFELIGYADDICIIVRGKIGSEICNRMQSALNFISKWCK
FT                 NEGLGINPSKTVIIPFTRRRSLVLPDLAIRGITIEFSNEVKYLGITLDRKL
FT                 NWNAHLNNVLNKGINALWVCKKTFGKKWGLRPKMIYWIYTCIVRPRITYAS
FT                 LVWWPKVKEKTAQNKLAKLQRLATISITGAMHSTSSAALNSLLNLLPLHKF
FT                 VELEAFKSALLMNRSTRIQDKDLTGHLEVLKNFTLNPALNSIVDWMPTKAN
FT                 YDIPFTVDAKSRYEWDNGGPNLRPGSIVFYTDGSRMNNKTGAGVFGPGIKT
FT                 SVPMGQYPTVFQAEVYAIIECLRICLKRNYRFANICIFSDSLAALNALKGY
FT                 TCQSRLVWEGINLLKQLSQNNAVNLYWVPGHCGILGNEIADSLARKGSETD
FT                 FIGPEPFFGVPDCSLKMELKRWELSTINSIWNSTDTSRQAKRFIFPGGKLS
FT                 RELLKLDKKNLRVITGLLTGHCPCKYHLFNMRKIPNAICRFCNIENETSEH
FT                 LLCNCGALIQSRISFFGKGVLQPSNINRFRPSRVIDFIKQVDPNWDNTQ"
XX
SQ   Sequence 3908 BP; 1261 A; 747 C; 833 G; 1038 T; 29 other;
     cgatttatct ggattaagga ctgctcgacg gaccccaggg cgttgawcgc acagggttct        60
     gagggcggtt cttmcagact tgaaataaca ataaatsaaa taataagggg agaccacctt       120
     cccgaaataa aggtgggaaa actcagcaat gaaamgattt attcaagtta acctccatca       180
     tgcgaagggw gcgtcagccg ttctttgcag aaggttcatg aaaaataaca tcgacgttgg       240
     tctcattcaa gagccctgga taaataatgg taaaattaaa ggaatttctg ctcwaatggg       300
     kaaattgtta tatgatgaca gttcacccaa tccaagagca gctatgttgg tmaaaaataa       360
     tacaaagttc atwccaatca ccgaatttat ttccagagac attgttgcga ttcagatgga       420
     ggtccctacg gtcagaggwa gtacctgggt gtgtatagcw tctgcgtact tccccggtga       480
     taccgatgaa gctcctccag ctgacgtaac aatgtttatt tcttactgta aaaaaatgaa       540
     taaacaattt attgttgggt gcgacgccaa tgctcatcac acagtatggg gtagcactga       600
     cattaacagt agaggcgaaa acttgcttaa ctwcataaca actaataata ttgatatttg       660
     taacaacggc gattgtccca cgtttgttac agcgacaaga caagaggtcc tkgacctcac       720
     gttttgcagt gawgttattt ctgaaagggt tataaattgg maggtwtccg atgaaatatc       780
     tctctcagat cacaaacaaa ttgagttcga atacaacgcw ggagaaatga tagttggaaa       840
     atataggaat ccaaagaaaa ccaattggga cgcmtataaa attcwwctaa atgactacga       900
     ctttaattcc gaggatgaaa tccgtactgt tgmacagttg gaaaaagcct cgtctgaact       960
     aattattgct ataaccgatt cttacasggc tagttgccca gtccaacaaa ggtcctctag      1020
     tcgtgaggta tcgtggtgga atgagaaact agctgtgcta mggaaaggwt ctagaagatt      1080
     gttcaacaga gcaaaaaaaa ctggagactg ggwctcatat aaaagwgccc tgactaaata      1140
     caataaagaa ataaaacgat caaaacgcag cgactggaga cgttcttgtg aaaaaatcga      1200
     ggaaactcca atagtcgcga ggttacaaaa agctctttcc aaagatcatt caaatggtct      1260
     aggaaatctt aaaaaggcgg acggcagttt tacgaaaaat gcttctgaaa cactggactt      1320
     aatgatgaaa tctcactttc ctggctcgac cgaggtaaca agtggtatag atcaggccga      1380
     gggcgaaaga ctggcaaaag attggtctgt actcgcccat aatcaagcct gtgaaatatt      1440
     tactcgttcc aaggttgact gggcggtgag ctctttcaaa ccatttaagt ccgcggggac      1500
     ggatggaatt tttcctgctc ttctccagca gggtaaagat attatcaatg ctaaattaac      1560
     wgacatattt cgagccagta tcgctcttgg ctatatccca aaagcttgga gagaggtacg      1620
     ggtcatattt attccaaagg cggggaaaag ggacaaaaca agtcccaaat ccttccgtcc      1680
     gattagtctc tcttcaattt tattgaaaac tatggaaaaa atacttgatg attttgtaaa      1740
     aagaacgttc ttgacaaaat ttcctctaag taatggccaa tttgcatacc aaagtggtaa      1800
     atcaaccata actgctttaa actgcttagt ttctaaaatt gagaagtccc tcaaagccaa      1860
     ggaagtagct ctggctgctt tcctagacat tgaaggagct tttgataatg catctcacag      1920
     ctctatgcgc tctgccatgg aagcgagggg ctttggttca tgyattatca aatggattga      1980
     agcaatgctt attgaaaggg agatttctgc cgaccttgga ggagawcgac tggtaatcag      2040
     accacggagg ggatgtccac aaggtggagt tctatcacct ctgctctggt cattagtagt      2100
     cgacgatctc ctgaaaaagt tggcgagtct cggctttgaa ctgatcggct atgcggatga      2160
     catctgcata atagttcggg gaaaaatagg aagcgaaatt tgcaaccgaa tgcaatcggc      2220
     attgaatttt atctcaaaat ggtgcaaaaa cgagggtctt ggtattaatc cctctaaaac      2280
     agttattata ccgttcacaa gacgaaggtc actagtacta cctgatcttg ctattcgtgg      2340
     gataaccatt gagttttcta acgaagtgaa atatcttggt attactttgg ataggaaact      2400
     taactggaat gctcacttga ataatgtatt aaacaaagga attaatgctc tatgggtgtg      2460
     taaaaaaacc tttggaaaaa agtggggcct tcgccctaaa atgatttatt ggatatatac      2520
     atgcatagtt agaccaagaa ttacgtatgc ctcacttgtg tggtggccga aagttaagga      2580
     aaaaactgca caaaataaat tagctaaact gcaaagatta gccaccattt caataacggg      2640
     agctatgcac agcacttcat ctgctgcact aaactccttg ttaaatttac ttcctcttca      2700
     taaattcgta gaattagaag catttaaaag tgctttatta atgaatcgat ccacaagaat      2760
     tcaggataaa gatttgactg ggcacctaga ggtccttaaa aactttactc tgaatccggc      2820
     gttaaactca atagtagact ggatgccgac caaggctaac tatgacattc cgttcacagt      2880
     ggacgctaaa agtcgctacg agtgggataa tggtgggcct aatcttcgtc caggctctat      2940
     tgtgttctac acggatggtt ccagaatgaa taacaaaacg ggagctggag tttttggccc      3000
     aggaattaag acatctgttc caatgggaca atatccaaca gttttccaag ccgaagttta      3060
     tgcaataatt gaatgtttgc gcatttgcct caaaagaaat tatagattcg ctaatatttg      3120
     tatcttttcc gacagcttgg cagcactgaa tgctctgaaa gggtatacct gccagtcaag      3180
     actagtatgg gaaggaatca acttactaaa gcaattgtcc caaaataacg cggtcaatct      3240
     ttactgggtt cctgggcatt gtggaattct aggaaacgaa atagcggaca gcctggcaag      3300
     gaaaggatct gagactgact tcattggccc agaacctttc tttggtgttc cagactgttc      3360
     tctgaaaatg gagcttaaac gttgggaact atcaacaatc aattcaatct ggaattctac      3420
     agatacttcc agacaggcaa aaagatttat ctttccaggt gggaaactat ctcgagaact      3480
     actaaaacta gacaagaaaa atttaagggt gataactggt ttactaactg gtcactgccc      3540
     atgcaaatac cacttattta atatgaggaa aattccaaac gcaatttgta gattttgtaa      3600
     tattgagaat gaaacatcag agcacctgct gtgcaattgc ggtgccctga ttcaaagtag      3660
     aatttcattt tttgggaaag gggtcttaca gccctccaat atcaacaggt tccgtcctag      3720
     tagggtgata gactttataa aacaagtcga ccctaactgg gacaacacgc agtaaacagg      3780
     agctgcctct catcgttcca tggtgttggg ttaacctgat ttgctacaaa aaaaaagagt      3840
     cacaccacaa tattcctcta attggtcgca gtggtcataa ggctcaacaa aaaaaaaaaa      3900
     aaaaaaaa                                                               3908
//
ID   LOA-4_DAzt  repbase;    DNA;    INV; 5341 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-4_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5341
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 880-880 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           269..1684
FT                 /product="LOA-4_DAzt_1p"
FT                 /note="DUF4780."
FT                 /translation="MEQDNGQARVGMSTQTSVGSVAATTGGHGEEQSSLRV
FT                 ASGHNSDVTGAGHVSFNTTATTPRCKMSRAGAVVEADSDLESVLSISKTEE
FT                 DSLLHSPEPGTSSLRREGPKRSREGMKAKSQYKAALKIVGRLQGKADISQE
FT                 EKSKLAWAELKVEEGRKYYAQVPQMKASTSQHANKVEELLATKRQRSTDSA
FT                 VTPASKRQRGPKRAEPTPKQAKQGSGERISDVSKRHLIVALIDRRDENGRI
FT                 TAAQWKMVHARLVDSLFTRMDENPTAPMPTFDGAGWLNGVKILKCKDDPTL
FT                 KWLTQTVCQLEAMWEGAKLEVVDRELIPSIPKAKVLFPIAIQGDRALKLLQ
FT                 RQNPEIPTADWKVLHAGSPLPNEGGQHVILQINKAAEDLLYPKYGKMAWGM
FT                 GSVYLRLKKRQPGDKDAHTLQAGEVEKDLGLDTMVAAAQGLALNDTEEEDG
FT                 DLTIVANPSYAGEPAAHETECAAAQLA"
FT   CDS           1653..5246
FT                 /product="LOA-4_DAzt_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MRLSVLQLNLHKSKTASAELHIAMEQGPADIALVQEP
FT                 WIASGNSVAGLKLSNYNSFYKTPVSRNRTVVLVRKGLHAYLMSNYSTDDLT
FT                 VVMLESEEKRLLVASCYMAHDRSAPPEELRSLVEDADSKDYQLIVGTDANA
FT                 HHSVWGSPDINDRGESLLDFILNNNIDVANVGEEFTYVGPTSSNVLDLTLV
FT                 TGKSTYISGWRVLERPSFSDHRYIQFKCEFEYTPKVKVYRNPRNTNWEKFR
FT                 KTITSKLASPGLVKSVEDIEKSLETLSTELLGAYHTACPPSRTRKKSKPPW
FT                 WNRDLSLQRNNLMEFFKLAKLANNENINEEYKTLLREYKKEIRKAQRSSWR
FT                 NFCSSIEKVPETARLRKLLSKQPTVQSQLKLDNGQWSEGSKEALTALMEAH
FT                 FPGCTEVTDAETHLDLATEEQTPPTDIITPKKIQWAIDSFTGIKAPGLDGI
FT                 FPAMLQVTKEVITPWLLAIYAACLRTGYIPIQWRTSRVVFLPKAGKCSHVS
FT                 SKDYRPISLTSFLLKTLEKLLDLHIRTVVRGLMSTNQHAYTKGKSVETALH
FT                 SLVAAVEKALNTKKYALGVFVDISGAFNNVSTEAITDCLEATNTHPSINLW
FT                 IKNLLSCRRVQSEWGTASTVRGAHRGTPQGGVLSPLLWNLVVNTLIKRFDR
FT                 KAPKITAYADDISIIITGVCPSTLSSIMERTLREICEWADGVGLSINADKT
FT                 DLILFTKRYKVPAWIPPKVNQTRLTPKSQVKYLGIVLDSKLTWRPNVLERM
FT                 KKATTALYASKKMLSSTWGLSPALMHWIYISVVRPTLLYGVLVWWQATEKK
FT                 TYHRLMERTQRQALLCITGALRSTPTKALETIVGIDPLDIYARLTAGKAAQ
FT                 RLIAMGNMSPQRFGHSSIGMEMISLTDYMIPQTCLEVRTNLFMGPEDWKVG
FT                 RDQTQHLNIYTDGSKMNEGVGAGLYCTNPEIRASYKLPDRCSIFQAEVFAI
FT                 KKAAEVAQLTERPHNTVNIFVDSQAAIKSMQSSAVSSRCVMASREALDSLS
FT                 TTKSVQIYWVPSHQGIEGNEAADVLAKEGVGLGNEIIESVPVSLRTLQSDL
FT                 EKQAKMRTDSRWKNTTTCRTSRIMCKKRSDKLSHYLLHLPRKDCRLLVGIL
FT                 TGHCLAASHAARLNITNSDICRKCNEPGAVETLEHLLCRCPALSRARSIYL
FT                 GAPMLASLEDASKRSPGKLLAFARNTSILGDFGTSETSS"
XX
SQ   Sequence 5341 BP; 1533 A; 1404 C; 1442 G; 962 T; 0 other;
     ggctggcgaa aatcctctag ctgaaccctc cccgagggtg ccggctgggc aatgggcact        60
     gcattatccc ggacaagggt aatgcattgt cgcttgctcc gtccgaggca atgcagtgtc       120
     tagctaaggc aatggcctgg cgtcttctcg acctcgagtc gggggagctg ggtcagggcc       180
     atggctagag gtgcctggcg ggtaggccta aaacgctagg gggtggcccc cccgataaat       240
     atcagccgta tggaccttcg ggccaagtat ggagcaggac aatggtcaag cacgggttgg       300
     gatgtcaacc caaacgtcgg tgggaagcgt ggctgctacc accggcgggc acggggagga       360
     gcaatcctct ctgcgtgtcg ccagtggcca caactcggac gtgacgggag caggtcacgt       420
     cagttttaat actactgcca caaccccccg ctgtaagatg agccgcgcag gtgccgttgt       480
     cgaggcagac tcggacctgg agagcgtgct atccatcagc aagacagaag aggatagcct       540
     tcttcactcg cccgagccag gcaccagctc cctgcgcagg gaagggccga agcgttcgag       600
     ggaaggaatg aaggccaaat cccaatataa ggcggccctc aagatagtag gcaggctcca       660
     aggcaaggcg gatatctccc aggaggagaa atctaagcta gcttgggccg agctgaaggt       720
     agaagagggc cgtaagtact acgcgcaggt gccacagatg aaggcatcga cgagccagca       780
     cgccaacaag gtggaagagt tgctggctac caaaaggcag cgctcgaccg acagtgccgt       840
     cactccggcg agcaagcggc agcgtggtcc taagagagcg gaacccacac cgaaacaggc       900
     aaaacaaggg tcaggcgaac ggatcagcga tgtgtccaag agacacctga tagtagctct       960
     catcgacaga cgtgatgaga atgggaggat aacagcggcg cagtggaaaa tggtccacgc      1020
     gcggctggta gactccctgt ttacacggat ggatgagaac ccaacagctc ccatgcccac      1080
     ctttgatggt gctgggtggc tgaatggggt aaaaatcctg aagtgtaagg acgacccgac      1140
     gctgaagtgg ctgacgcaaa cggtctgcca actggaagcg atgtgggagg gggccaagct      1200
     ggaggtggtg gacagggagc taatcccgtc cataccaaag gcaaaggtgc tcttccccat      1260
     cgcaatccaa ggggatcgcg cgctgaagct cctacagcga cagaacccag agataccgac      1320
     cgctgactgg aaggtattgc atgccggtag cccactaccc aacgaggggg gccagcatgt      1380
     gatcctccag ataaacaaag cagcggagga tctcctatac cccaaatacg ggaaaatggc      1440
     atggggcatg ggcagtgtct acctgcgcct caaaaagcgt caacccggcg acaaagacgc      1500
     ccacaccctg caggcaggcg aagtggagaa ggacctcggt ctggatacca tggtagcggc      1560
     cgcccagggt ctggcgctaa atgacacgga agaagaggac ggcgacctga ccatcgtagc      1620
     caacccgtca tacgcagggg agccagctgc tcatgagact gagtgtgctg cagctcaact      1680
     tgcataagag caagacagcc tcagcggagc tccacattgc catggagcaa gggcccgctg      1740
     acatagcttt ggtccaggag ccctggattg catcaggcaa ttcggtggcc ggactaaagc      1800
     tctcaaatta taactctttc tacaaaacac cggtaagcag gaacagaaca gtcgtacttg      1860
     tacgaaaggg actccatgct taccttatgt ctaattacag cacagatgac ctaacagtgg      1920
     tgatgctgga aagcgaggag aagcgccttt tggtagcttc ctgctacatg gcacacgaca      1980
     ggtctgcacc gccagaggaa ctaaggagtt tggtggaaga cgccgactcc aaagactacc      2040
     aactgatcgt tggcacggac gctaatgccc accatagtgt gtggggaagc cctgacatca      2100
     acgaccgagg tgagtcactc ttagacttta tactaaataa taacatagat gtagcaaacg      2160
     tgggagagga attcacctac gtgggtccca cctcgtcaaa cgtactagat ctaactctcg      2220
     taacgggaaa gagtacctac atatctggat ggagggtcct cgaacgaccc tccttctcag      2280
     accacaggta cattcaattc aagtgcgaat ttgaatacac tccgaaggtg aaagtctata      2340
     gaaacccccg gaacacaaac tgggagaagt ttagaaagac aatcacttcg aaactcgcga      2400
     gcccgggcct agtgaaatcc gtggaggata tagaaaagtc cctagagacc ctatctacgg      2460
     aattgctagg ggcataccac acagcctgcc caccctctag aacaagaaag aagtccaaac      2520
     caccctggtg gaatcgagac ctctctctac aaagaaacaa cctcatggaa tttttcaagc      2580
     tcgctaaact cgcgaacaat gagaacatca atgaggaata caagacgctc ttaagggagt      2640
     acaagaagga aatacgtaag gcacagcgca gctcatggag aaacttctgc tccagcattg      2700
     agaaagtgcc ggaaacggct agactgagga agttgctgtc aaagcaaccc acagtacaaa      2760
     gccaactcaa attggacaac ggacagtggt cggagggcag caaagaagcc ctaacggcac      2820
     tgatggaggc ccacttccca ggatgcaccg aggtcaccga tgcggaaacg catttggacc      2880
     tagcaactga ggaacaaaca cccccaacag acataataac tccaaagaag atccaatggg      2940
     ctatagattc cttcacgggc ataaaggcac ctggactgga cggtatattc ccagccatgc      3000
     tgcaggtgac caaagaggtg atcaccccat ggcttctcgc aatttacgca gcatgcctga      3060
     ggacaggcta tatcccgatc caatggagaa cctctagagt tgtcttcctc ccaaaagcag      3120
     gaaagtgcag ccatgtgagt tctaaggatt acagaccgat aagcctgacc tctttcctac      3180
     tgaaaacctt agaaaagctg ctggacctac acatcagaac cgtagtaagg ggactgatgt      3240
     caactaacca gcacgcctac actaagggga aatcggtgga aacagcgcta cactcgttag      3300
     tagctgccgt cgagaaagcc ctcaacacta agaaatatgc acttggggta ttcgtagata      3360
     tatccggagc atttaataat gtctctacag aagccataac ggattgccta gaagcaacca      3420
     acacccaccc gtcaatcaac ctctggataa agaaccttct aagttgcaga cgggtgcaat      3480
     cagagtgggg caccgcctcc acggtcagag gtgcacacag gggcacaccc cagggtggag      3540
     tcctgtcacc cctcctgtgg aacctggtgg tcaacaccct catcaagaga ttcgatagga      3600
     aggccccaaa aataacagcc tatgcggacg acataagtat aattatcacg ggtgtatgtc      3660
     catcgactct cagctccata atggaacgaa cactcaggga gatatgtgag tgggcagatg      3720
     gagtaggact cagtatcaac gcggacaaaa cggacctcat cctcttcact aagagataca      3780
     aggttccagc atggatcccc ccgaaagtca accaaacaag gctaacccct aaatcacagg      3840
     tcaaatacct cggcattgta ctggacagca agctgacatg gagacccaat gtattagagc      3900
     ggatgaaaaa ggccaccact gcactttatg catccaagaa gatgcttagt agcacatggg      3960
     gcctgtcacc tgctctgatg cattggatct acatctcggt ggtgcggcca actctgctgt      4020
     atggagtcct agtgtggtgg caagccactg aaaagaagac ttatcacagg ctaatggagc      4080
     gaacccagcg gcaggctctg ctctgcataa caggcgcgct gaggtcaacg ccaaccaaag      4140
     cactcgaaac tatagtcggg atcgaccctc tcgacatcta cgccaggctg accgcaggaa      4200
     aggcagcaca gcgcttgatt gcgatgggga atatgtctcc ccaaagattc gggcacagtt      4260
     caattggaat ggaaatgatc agtctaaccg actacatgat cccccaaacg tgccttgaag      4320
     taagaacaaa cctgttcatg ggacccgaag actggaaagt tggacgtgac cagacgcaac      4380
     acctcaacat atatactgac ggctccaaga tgaacgaagg agtaggagct ggcctatact      4440
     gtacgaaccc ggaaataagg gcgtcgtata agctacccga ccgatgcagc atcttccagg      4500
     cagaagtttt cgccatcaag aaagcagcag aggtcgctca gctcacagag cgaccacaca      4560
     atacagtcaa catattcgtt gacagccaag cggcgataaa atccatgcag tcgtccgcgg      4620
     tcagttccag atgtgtcatg gcaagcaggg aggcactaga ctcactaagc acgactaagt      4680
     cagtgcagat ctattgggtt cccagtcacc agggcattga aggaaacgaa gcggcggacg      4740
     ttctggctaa ggaaggcgtc gggctaggta acgagataat cgaaagcgtg ccggtctccc      4800
     taaggacgct acaaagtgac ctggaaaagc aggccaaaat gaggacagac agcaggtgga      4860
     agaacaccac cacctgcaga acctcgagaa tcatgtgcaa gaagcgcagt gataaactca      4920
     gccactactt gctgcacctt ccacggaagg attgcagact gctagtgggc atactaacgg      4980
     gccactgcct ggctgcgtca catgcagcca ggctaaacat taccaacagc gacatctgca      5040
     ggaaatgtaa tgaaccaggg gctgttgaaa ccctggaaca tctactctgc cggtgtccag      5100
     ctctctcaag ggcaaggagc atatacctgg gcgcaccgat gctggcatca ctggaggatg      5160
     cctccaagag gtcgccaggg aaactgcttg cctttgctag aaacacctcg attctggggg      5220
     acttcggaac ctcagaaaca tcctcgtaag gtccattaaa agatccggat gactaggggc      5280
     cattttttgg cctatgatag gctccgtaga gggccgtccg gagcaaccta acctaaccta      5340
     a                                                                      5341
//
ID   Loa-4_DTa   repbase;    DNA;    INV; 4860 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.10, Created)
DT   11-JAN-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Loa-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4860
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2830-2830 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1157
FT                 /product="Loa-4_DTa_1p"
FT                 /translation="RVASGRTPGMTGAGHSSGNVTAITSQAKLSRTGAVVV
FT                 VDSDSESVLHEAKTSHTRLPVPGSNSPRREGPKRTSEGMKAKAQYKAALKI
FT                 KSRLQDKADLSQEEKEKLAWAEQRIEEGRLHFASKPAMASTGGFANKVEEM
FT                 LANKRQRSHESAAKDIPVSKRKRGPKETGPPPPKAAQKPNKRAKISDVVNR
FT                 HLIVALIDRNDENGKMTEARWKIVHARLIESLFARMDESPTAPMPTFDGAG
FT                 WLNGVKILKCNDDPTRKWLTQTVCQLEALWEGAKLEVVDRELIPSIPKAKV
FT                 LFPVAIQGDRALKLLQRQNPDVPTANWKILHMASPLPNEGGQSVVLQINKE
FT                 AEDLLYPRFGKMAWGMGSVYLRLKKRHPGELGGGRLGRRRGR"
FT   CDS           join(1175..2989,2887..3366,3460..4764)
FT                 /product="Loa-4_DTa_2p"
FT                 /note="Exonuclease-Endonuclease-Phosphatase (EEP)
FT                 domain, Reverse transcriptase, non-LTR RNase HI."
FT                 /translation="PTRRAEMSQPPMTLRVLQLNLHKSRLASAELLIALEQ
FT                 GPVDIALVQEPWIASGNIVAGLRSSNYNTFYSPTVSRNRSAVLVRKGIHAN
FT                 LMPHYSSDDLTAVMLESEEQRLLVASCYMAHDRSAPPDELSSLVELGSKDD
FT                 QLLIGADANAHHSVWGSSDINDRGESLLDFILSTNLYIANVGEEHTFVGPT
FT                 SSNVLDITLVKGQSTLVSEWRVLKTPSFSDHRYIQFRYDFKSTPKVAVYRN
FT                 PRNTNWEKFTRTVTSKLATSPGVVKSERDIERSLETLSKELLDAYHASCPT
FT                 SRTRKKTRPPWWNRELTLQRHNLREFFKIAKKADDEIINEEYKILLRDYKK
FT                 ETRRAQRSSWRNFCSSIENVPETARLRKLLSKQPTIQSQLKRDDGQWTEGS
FT                 EEALTALMQSHFPGCTDVLDASTHQDIATGEERPPNDLITTTKINWAIDSF
FT                 AGYKAPGLDGIFPAMLQATKERITPWLYEIYSACLSTGYIPIQWRTSRIVF
FT                 LPKAGKCSHASPKDYRPISLTSFILKTLEKLLDLHIRNDVGRLMSSNQHAY
FT                 TKGKSVETALHSLVATVERALHIKEYALGVFVDISGAFNNVKTDAIMDRLE
FT                 ATTRTPQGICAWSIRRYIRSIQQCQDGCYNGSPRSNHTHPAISLWIRNLLS
FT                 CRRVHSEWGTASMVKGAHRGTPQGGVLSPLLWNLVVDDLIKRFERRAPKIT
FT                 AYADDIGIIITGVCPSTLSSIMESTLREICEWAEKVGLSINADKTDLILFT
FT                 RDTRYQNGPPRKSAKTKKMLSSTWGLSPALMHWIYISVVRPTLLYGALVWW
FT                 QATEKTTYTELMERIQRQALVCITGALKSTPTKALETILGVDPIDIHAQLT
FT                 AGKAAQRLVASGNMTAQSFGHSSIGRSMINKTDHMTPRTCPEVKTTSFMGP
FT                 DDWKTGRDQTQHLNIYTDGSKMEGGVGAGLYCTDPEIRLSFKLPNDCSIFQ
FT                 AEVFAIRKAAEVAQNINRPHDVVNLFVDSQAAIRSMQSSTVSSKNVMASRE
FT                 ALDNPSTTKSVRIYWVPSHQGIDGNETADVLAKEGVELANDRTENVPVSLR
FT                 TLQSALEKQADTRAKSRWRNTKTCRISRTMCKERNDKLSQYVLRLPRKDCR
FT                 LLVGILTGHCLAASHATTLGILNSRACRKCDESGAIETLEHLICNCPALSR
FT                 ARRRYLGAPVLASLGDASSREPGELLAFAKNTSILMDIKTS"
XX
SQ   Sequence 4860 BP; 1426 A; 1273 C; 1299 G; 862 T; 0 other;
     tgcgtgtcgc cagcggtcga acccctggga tgacgggagc aggtcattcc agcggcaatg        60
     ttactgccat aacatctcag gcaaagttaa gccgcacggg tgccgtagtt gtagtagact       120
     cggactcgga gagcgtgcta cacgaagcca aaacaagcca tacccgcttg ccggtaccag       180
     gttccaactc cccgcgtagg gaagggccga agcgtacaag cgaggggatg aaggccaagg       240
     cgcagtacaa ggcagccctc aagatcaaga gccggctcca ggacaaagcg gacctttccc       300
     aggaggagaa ggaaaagcta gcctgggcag agcaaaggat tgaggaagga aggctgcact       360
     tcgcaagcaa acccgcgatg gcgtcgacag gcggatttgc caacaaggtg gaggagatgc       420
     ttgccaacaa aaggcaacgc tcacacgaga gtgccgccaa ggacattccg gtgagcaagc       480
     ggaaacgcgg gcccaaggag acaggccctc cgccacccaa agcagcacag aagcccaaca       540
     agagggctaa aatcagtgat gtagtcaacc gacacctgat cgtggcactc attgacagga       600
     acgacgaaaa tgggaagatg acggaggcgc gctggaagat cgtccatgcg cgactgatcg       660
     agtctctctt tgcacggatg gatgaatcac ccacagcccc catgcccaca ttcgatggtg       720
     cagggtggtt gaacggcgtg aaaatcctga agtgcaacga cgatccgacc aggaagtggc       780
     tgacgcaaac ggtctgccaa ctggaggcgc tgtgggaggg cgccaagcta gaggttgtgg       840
     acagggaatt aatcccatcc ataccaaagg cgaaagtgct cttccccgtc gcaatccaag       900
     gggatcgggc gctgaagctg cttcaacggc agaatccaga cgtcccaacg gcgaattgga       960
     agattctgca catggccagc cctctaccca acgagggggg ccaaagtgtg gttctccaaa      1020
     tcaacaagga ggcggaggat ctgctgtacc caagattcgg gaagatggcg tggggcatgg      1080
     gtagcgtcta cctgcgcctc aagaagcgac accccggcga gctgggggga ggacgactcg      1140
     gaagacgaag aggacggtga cctgactgta atagccaacc cgtcgagcgg agatgagcca      1200
     gccacccatg acgttgaggg tgctgcagct caatcttcat aaaagcagac tcgcatcggc      1260
     ggagctcctg attgccctag agcaagggcc cgtcgacata gccttggttc aagagccatg      1320
     gattgcctcg ggcaatatcg tggccggact aaggtcctca aactacaata cattctactc      1380
     accaacggta agcaggaaca gaagcgccgt acttgtgcgg aagggtatcc atgctaacct      1440
     tatgcctcat tacagctctg acgacttgac tgcggtgatg ctagaaagcg aggagcagcg      1500
     cctcttagta gcctcctgct acatggcaca cgacagatcg gcgccaccag acgagctgag      1560
     cagcttggtg gagctaggct cgaaggatga ccaactcctc attggtgcag atgccaatgc      1620
     acaccacagc gtgtggggaa gctcagacat caacgacaga ggtgagtcac tcttagactt      1680
     tattctatct actaatctat atatagcaaa cgtgggggag gagcacacct tcgtaggtcc      1740
     cacctcgtca aacgtgctag atataacact tgtaaaggga cagagtactt tggtctccga      1800
     atggagggtc ctaaaaacac catctttctc ggaccatagg tatattcagt tcagatatga      1860
     ttttaaaagc actccaaagg tagctgtcta tagaaacccc cggaacacga actgggaaaa      1920
     gtttacaagg acagtgacct cgaaactcgc gaccagccca ggcgtagtaa aatccgagag      1980
     agacatagaa aggtccctag agaccctgtc caaggaatta ctggatgcgt atcacgcatc      2040
     atgcccgact tcaagaacaa ggaagaagac caggccacca tggtggaatc gggaacttac      2100
     actccaaaga cataacctcc gagaattctt caaaatcgcc aaaaaggcag acgatgagat      2160
     cattaacgag gaatacaaaa tcctactgag ggattacaag aaggaaacac gcagggcgca      2220
     gagaagctcg tggagaaact tctgctccag catcgagaat gtcccggaaa cagctagact      2280
     ccggaagctg ctttcaaagc aacctaccat acagagtcag ctaaaacgcg acgacggaca      2340
     gtggactgag ggcagtgaag aggccctaac agcacttatg caatcgcact tcccaggatg      2400
     cacggatgtc ttagacgcca gcacgcacca agacatagca actggcgaag aacgcccccc      2460
     aaacgatcta ataacaacta cgaaaatcaa ctgggccata gactcctttg cgggctacaa      2520
     ggcaccagga ctagatggaa tatttccagc catgttacag gcgaccaagg aaaggatcac      2580
     cccatggcta tatgaaatat actctgcatg tctaagcacg ggctatatcc caatccaatg      2640
     gaggacctct cggattgtct tcctcccaaa agcgggaaag tgcagtcacg cgagccccaa      2700
     ggattacagg ccgataagcc tcacctcttt catactcaag acactggaaa agctgctgga      2760
     tctacacatc aggaatgatg tagggaggct catgtcatcc aaccagcacg cctacaccaa      2820
     ggggaaatct gtggaaacgg cactacactc gctagtagca accgttgaga gagccctaca      2880
     cattaaggaa tatgcgcttg gagtattcgt agatatatcc ggagcattca acaatgtcaa      2940
     gacggatgct ataatggatc gcctagaagc aaccacacgc accccgcaat aagcctctgg      3000
     ataagaaacc tgcttagctg caggcgggta cattcagagt ggggcaccgc ttccatggta      3060
     aagggggcac acagaggcac accacaaggt ggggtcctct cgcctctcct atggaatttg      3120
     gtggtcgacg atctaatcaa gagattcgag aggagagccc caaaaataac agcctatgcg      3180
     gacgacatag gcataattat tacgggagtt tgtccatcga ccctcagctc tataatggaa      3240
     tcaacactca gggagatatg tgagtgggcg gaaaaggtgg gactcagtat caatgcggac      3300
     aaaacggacc tcattctctt tacaagagat acaaggtacc aaaatggacc cccccgaaaa      3360
     tcggcgtaac caggctgacc ccaaaaacac aggtcaagta cctaggcaca gtactggact      3420
     gcaagctggc atggagaccc aatgtagtgg aaagggtgaa aaaccaagaa gatgcttagc      3480
     agcacatggg gcctgtcacc tgctctgatg cactggatct acatctcggt ggtgcgtccg      3540
     actctgctgt atggagcctt agtgtggtgg caagccactg aaaagacgac gtacaccgag      3600
     cttatggaga gaattcagcg gcaggcattg gtctgcataa cgggggcgct gaagtcaacc      3660
     ccaactaaag ctctagaaac gatcctcgga gtcgacccca tagacatcca cgcacaactg      3720
     actgcaggaa aggcagcaca acgtctagtt gcatcaggta acatgacggc gcaaagcttc      3780
     gggcatagtt caatcggccg aagcatgatc aacaaaacgg accatatgac ccccagaacg      3840
     tgcccggagg ttaaaacaac ctcgttcatg ggcccagatg actggaaaac gggtcgggac      3900
     cagactcaac acctcaatat atacacggac ggctccaaga tggaaggagg agtaggagcg      3960
     ggcttatact gtacggaccc tgaaataagg ctgtccttta agctacccaa tgactgcagc      4020
     atattccagg cggaagtctt cgccataagg aaagctgctg aagtggctca aaatataaat      4080
     cgaccacacg atgtggtcaa cttgttcgtg gacagccaag cggcgataag atccatgcag      4140
     tcgtcaacag tcagttccaa aaatgtgatg gcgagcaggg aggcattaga caaccctagc      4200
     acgacaaagt cagtgcggat ctattgggtt cccagtcacc agggcatcga tggcaacgag      4260
     acagctgacg ttcttgcaaa ggagggcgta gagctggcga acgacagaac ggagaacgtg      4320
     cctgtttccc tccgaacgct ccaaagcgcc ctggagaaac aggcggacac gcgagcaaaa      4380
     agcaggtgga ggaataccaa gacctgccga atctcaagaa ctatgtgcaa agagcgcaac      4440
     gacaaactca gccagtatgt actgcgtcta ccacggaaag actgcagact gttagtggga      4500
     atccttacag gccactgtct ggccgcatca cacgcaacca cactcggaat actcaacagc      4560
     cgcgcctgca ggaaatgtga tgaatcgggg gctatcgaaa ccctggaaca tcttatctgc      4620
     aactgcccgg ctctctcaag agcgagaaga agatacctcg gtgccccagt actggcatca      4680
     ctaggagacg cctccagcag ggaaccagga gaactacttg ccttcgccaa aaacacctcg      4740
     atccttatgg acataaaaac ctcttaactt atctcaaggt tcatgcgcat caaccggaca      4800
     actaagggcc atattggcct atgcgtggcc ccgtgagggc cgtccgggtt aacctaacct      4860
//
ID   LOA-5_CQ    repbase;    DNA;    INV; 5898 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5898
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 152-152 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           436..2106
FT                 /product="LOA-5_CQ_1p"
FT                 /translation="MMNELDPKRSANCSQQLEKTEEKEEVKKGKESAVIEE
FT                 KIENMECGGVDDGDGDDLEDQLGDLGLDGGSSVSSSVLDSPQRSMEVDAPE
FT                 DQSAGPGIPPGDNDSLHSSGDTSGSVTPTPVDPAGSNRKRRKPGKPKLTNA
FT                 QLRRMDYFVRNGHPPKEARELALVPVEQNYLNKRQRSKDEPSPNSSGQGKG
FT                 PDKKRIRNRGSEGPAPPPAAQAGMISYKEVAEAIHVAVIPLGYPAKTLTTE
FT                 ELKAIRTQLLDLIIKLETPVVRPKYRNCTFKYGYLILACADEATAGWTKEV
FT                 VNKLQPWEGAELVAVNLADLPKQVLFLGYFQDSLQYTSEDIIRLVQNQNDD
FT                 FRTEQWKVARRTEHSKTIELLIEMDEKSAEQVAAQHFQLNYTFGKARLRKV
FT                 TGSTANSDQKDSATLTGKVQTEHVPQPPAQDSQITERTVLSGAQPSCSQPL
FT                 DRIDVTAKPGTVLQKSESESKQQPLGSSRKTKPRKVPQGASSNKKLQPPGS
FT                 SKNKQSNLQGVGRGPVTGRIQPLESAIAGASKKHGSTAAGNCRPKPGSLAG
FT                 PATGSSSSQQ"
FT   CDS           2106..5783
FT                 /product="LOA-5_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MSSIRCLQVNLHHAKGASSVLSRRFTKEQITIALLQE
FT                 PWVNNTKILGLPTQNSKLIYCNTQSKPRTAILLRCGIKYTPITEFIQRDIV
FT                 AITVEVPTATGKQELIIASAYFPGDQDDVPPLETTAFVRYCRDVNKPFLIG
FT                 CDANAHHTIWSSTDINKRGECLLEYLSSNDVNVCNEGDKPTFINAIRQEVL
FT                 DLTLCSSSISEKVKNWHVSDEPSLSDHRHIVFNIEARALETEEYRIPAKTD
FT                 WNAFKEHLQGTRMPINPKIRTPMELETEAENLQGRIIEAFNASCPLKKRRV
FT                 CRDVPWWSEKLADLRKEARRLFNRAKLSGNWDAHRAALTKYNAELRNAKKE
FT                 SKKRFCESIATMPVATRLQKALSKDHTNGLGQLRTEDGSLTKTNKDTLDVL
FT                 MSTHFPGSSTKDEAVTNRPADFNVRRSVPVEAIHLARRMFTSTSIKWALHA
FT                 FEPLKSPGPDGILPIFLQKAGDIILPEMITIFRSSYILGYIPESWCKVKVI
FT                 FLPKAGKPDKTLPKAFRPISLTSTLLKLMEKITDNYIRAEFLKNSPLHRHQ
FT                 HAYQSGKSTESALHHLVTLVEKSLRHQETVLGAFLDIEGAFDNTSYGSIKT
FT                 ALLNRGIDATTTNWIETMLISREISASLGDTTVVVKAAKGCPQGGVLSPLL
FT                 WSLVVDTLLQNLSELGYEVIGYADDVTLIIRGKCDATISCRLQSGLNYIIH
FT                 WCTQEGLSINPNKTVLIPFTRRRKHNISPPVIKGVRLDFSSEVKYLGVFLD
FT                 RKMNWNSHLDYAVKKAISAIWTCSKLFGKTWGLSPQLALWSYTTIARPRLT
FT                 YASLVWWPKVNERTAQAKLNKVQRLACLSITSAMKTTPTAAMEALLHILPL
FT                 HLYVKKEAENGALRQRRHNINYEGDLTGHLRIMKEFDITPLVTTVTDCMEA
FT                 RPNIDTPYDTVETTRRLWCAGGPELPPGTICFYTDGSKIGDLTGAGIFGPG
FT                 IKLSISMGRWPTVFQAEVYAIYSCAVHCLKKNYRHAKIGIFSDSQAALLAL
FT                 KAARVESKLVWDCIDVLRELSRRNKVSLFWVPGHCGIMGNEFADQLARQGS
FT                 SAKFVGPEPFLGTSKCAVKYELKKWEDNQISSTWFATQGCRQAKNFITPKP
FT                 AITNKLIGLKRSELRTVTGLLTGHCPAKYHLKKLGIVDNDICRFCNTELES
FT                 SAHLLCTCGAIATRRLNSLGSRLLSPYAVWRTHPKKMISFMNCIIPEWDKS
FT                 TGQPTTNSLPPVNGYE"
XX
SQ   Sequence 5898 BP; 1755 A; 1470 C; 1428 G; 1244 T; 1 other;
     ccgcctaggt acagaacacg gatgacaaac ggagcaagct acaatcttac gcgattgtat        60
     cttaggaagg gaaatcattg agaactgtaa cttgscggtc gtaagcccgg gtaaaggagg       120
     aacgttgaga tggaggctgt tctctgcctc catcttgtaa aaaaatagta cggagaacct       180
     actggaggtt atcttagggt agcgtgcaaa attggcatgc tatccaagta aactacctcc       240
     tatattagac cccaatctac agtgtcacgc gacccgtgcc aagagatgta tgcctggggg       300
     ggtctttaac attgattcca ggtcttaacg gagcctgtgc ggcaccgggg caccccgcac       360
     agtatcttgc tccatctgtt ccatgcaggc tctagaacgg atgtttaatt ttccttgcag       420
     tttagtgaaa tcagtatgat gaatgaatta gacccaaaac ggagtgccaa ctgctcccaa       480
     cagttggaaa agactgagga gaaggaagaa gtgaagaaag gaaaagagag tgcagtaata       540
     gaggagaaga tcgagaacat ggagtgtggg ggggttgatg acggggatgg agacgatctg       600
     gaggaccagc tcggcgactt gggccttgac ggaggctcgt cggtttcttc atccgttctt       660
     gactcacccc aacgatctat ggaggtggat gcacctgagg accaaagtgc tggtcctggg       720
     atcccaccag gtgacaacga ttcgttgcat tcttcggggg acacttcggg gagcgtgacg       780
     cctactccag ttgatccagc cggaagcaac aggaagcgca ggaagccagg caaaccgaag       840
     ttgaccaacg cacaacttcg ccgaatggac tactttgtcc ggaacggaca tccgcccaag       900
     gaagcgcgtg aacttgcact agtgccggta gaacaaaact acctcaacaa gcgccaacga       960
     tcgaaggatg aaccttcgcc gaacagcagc ggtcaaggta agggacccga taagaaacgg      1020
     attagaaacc gtggatctga aggacccgca ccaccaccgg ctgcccaagc cgggatgatc      1080
     tcctacaagg aagtggccga agcgatccat gtcgctgtca ttccactagg ataccccgcc      1140
     aaaacgttaa ctacggaaga gctgaaagct atccgcacgc aactgctgga cctgattatc      1200
     aagctggaga cacccgtcgt cagaccgaaa tacaggaact gcactttcaa atacggttat      1260
     ctcatcctcg cttgcgctga tgaggcgacc gctggctgga caaaagaggt ggtgaacaag      1320
     cttcaaccat gggaaggtgc ggagctcgtt gctgtaaacc ttgctgacct gccaaaacaa      1380
     gtcctattct tgggatattt ccaagacagt cttcagtaca ccagtgagga cattataaga      1440
     cttgtccaga accaaaacga tgacttccgc actgagcagt ggaaggtcgc tcgcagaacg      1500
     gaacactcga agaccatcga actgctgatc gagatggatg agaaatccgc ggaacaagtc      1560
     gcagcgcagc acttccaact gaactacacg tttggtaagg cacgtctgcg gaaagttacg      1620
     ggatcaacgg ccaactccga ccagaaagat tctgctacct tgacagggaa ggttcaaacg      1680
     gaacatgttc cgcaaccacc tgctcaggac agtcaaatta cggagaggac ggttctatcg      1740
     ggcgctcaac caagctgctc gcaaccactt gaccggattg acgttaccgc gaagccaggg      1800
     acggttctgc aaaagtctga gtctgaatcc aagcaacaac cacttggaag tagtcgcaag      1860
     acgaaaccaa ggaaggttcc gcaaggtgca agctcaaaca aaaagctcca accacctggt      1920
     tctagcaaaa acaaacagag caatctgcaa ggtgttggtc gtggtcccgt aactggccgc      1980
     attcagccac tggaatctgc catcgcggga gcatccaaga aacacggctc tacagctgcg      2040
     ggtaactgcc gcccaaaacc cgggtcacta gcgggtccgg caactggcag ttcctcatcc      2100
     caacaatgag cagcattcgc tgcttgcaag tgaatctcca tcacgcgaag ggcgcctcca      2160
     gtgtcctaag ccggagattc acgaaagagc aaataactat tgctctacta caagaaccgt      2220
     gggtaaacaa cacgaagatt cttggattac caacacaaaa cagtaagtta atctactgca      2280
     acactcagtc taagcccagg actgccattc tgttgcgctg tggtattaaa tatactccca      2340
     ttacagaatt catccagcga gacatcgttg caatcacggt agaagtcccc acagccacgg      2400
     gaaaacagga gctgataatt gcgtcggctt acttcccagg tgaccaggac gacgtaccgc      2460
     cacttgaaac cacagctttc gtgagatact gcagagacgt caacaaacca tttctaattg      2520
     gatgcgacgc caacgcacat cacacgatct ggagcagcac ggacataaat aaaagaggtg      2580
     agtgccttct tgaatacctt tcgtcaaacg atgtcaatgt atgcaacgag ggagacaaac      2640
     ctacttttat caacgctatt cgacaagagg tactggatct caccttgtgt agttcctcaa      2700
     tctccgaaaa agttaaaaac tggcacgttt cggacgagcc cagcctatct gaccacaggc      2760
     acattgtctt caacatcgaa gccagggcgc tggaaactga ggaatataga attcccgcta      2820
     aaacggactg gaatgccttc aaggaacacc tgcaaggtac gcgaatgccg attaatccaa      2880
     aaattcggac tcctatggaa ctggaaactg aagcggaaaa tcttcaggga aggatcatag      2940
     aggcgttcaa cgcaagctgt ccgttgaaaa aaaggagggt gtgccgtgac gttccctggt      3000
     ggagcgaaaa gctggcagat cttcgcaaag aagcaagacg cttgttcaac agggctaaac      3060
     tctcgggaaa ctgggatgcc catagagcag ctctcaccaa atacaacgct gagttgcgga      3120
     atgctaagaa agaatcgaaa aaaagattct gtgaaagcat tgcgacaatg cccgtagcta      3180
     cccgactaca aaaggcgctg tccaaagatc acactaatgg tcttgggcaa ttaagaacgg      3240
     aagacggtag tctcacgaaa acaaacaagg atactctgga cgtgcttatg tccactcatt      3300
     ttcctggatc atcaactaag gatgaagcag ttaccaacag accagcggac ttcaacgtgc      3360
     gaagaagcgt tccggtagag gcaatccatc ttgctcgacg tatgttcaca agtacgtcga      3420
     tcaagtgggc tctccatgct tttgagcccc tgaaatctcc tggacccgac ggtatacttc      3480
     ccatcttctt acaaaaagcg ggcgacatca tcttgcccga aatgatcaca atatttcgct      3540
     ctagctatat tctaggatac atcccggaaa gctggtgcaa ggttaaggtg atcttcttac      3600
     caaaggctgg caaacctgac aagactttgc ctaaagcctt cagacccata agtctgacat      3660
     ccacgctgtt aaaacttatg gaaaaaatca cggataatta tatccgcgcg gagttcctga      3720
     aaaactctcc gctgcacagg catcaacacg cttaccaatc gggtaaatct acggaatccg      3780
     cgttacatca tctggtgacg cttgttgaaa aatcactcag gcatcaagaa acggttctag      3840
     gggcgtttct ggacattgag ggagctttcg acaacacatc atacggatca atcaaaacgg      3900
     cacttctcaa cagaggaata gacgctacaa ccacgaactg gatagaaacc atgcttataa      3960
     gcagggaaat ttctgcatcg ctaggagata caactgtagt cgtgaaagcg gccaaaggat      4020
     gtccgcaagg aggggtactc tcacccttgc tttggtcgct agttgtagat acacttctac      4080
     aaaatctctc cgaactaggg tacgaagtca taggatatgc tgacgatgtt accctcatca      4140
     tcaggggcaa atgtgacgcg acgatctcgt gcaggttgca gtcaggtctc aactacatca      4200
     ttcactggtg cacacaagag ggactatcca tcaaccccaa caaaaccgtt ttaattcctt      4260
     tcactaggcg gagaaaacat aacatttctc cgccggtgat taaaggtgtt cggctcgact      4320
     tcagttctga agtcaagtat ctaggagttt tcctggatcg caaaatgaac tggaactcac      4380
     atctggatta cgccgttaaa aaagcaatat cggccatctg gacctgcagt aaactgttcg      4440
     gaaagacctg gggcctctcg cctcaactgg ctctctggtc ttacaccacc atagcacgac      4500
     cgaggctaac atacgcgtct ctcgtatggt ggccaaaagt gaacgagagg acggcgcaag      4560
     caaagttgaa caaggttcag cggttggcct gcctctccat cacaagtgct atgaaaacaa      4620
     caccgaccgc tgcaatggag gcactgctcc acattctacc actacatctt tacgtcaaga      4680
     aggaagcgga gaatggagca ctacgacagc gaaggcataa catcaactac gaaggtgatc      4740
     taacaggtca cctgcgcatc atgaaggagt tcgacataac tcctctagta acaacagtta      4800
     cagactgcat ggaagcgaga cccaacatag acactccata cgatacagtt gaaacaactc      4860
     gtagactctg gtgtgctggg gggccagaac ttccaccagg aactatctgc ttctatacag      4920
     atggctccaa aataggtgat ctcactggag ctgggatctt cggaccaggg atcaaactat      4980
     ccatctcgat gggtagatgg cccaccgttt ttcaagcaga agtctatgct atatactcct      5040
     gcgctgtgca ttgccttaaa aagaactata ggcatgcgaa aatcggtata ttctcggaca      5100
     gtcaggcagc actgctagct ctgaaagccg caagggtgga gtccaaactc gtttgggact      5160
     gcatcgacgt actacgggag ctgtcccgcc ggaacaaagt atctttgttc tgggtacctg      5220
     ggcactgtgg gatcatgggg aacgagtttg ccgatcagct cgctaggcag gggtcatcgg      5280
     ctaaatttgt tggtcctgaa ccatttctgg gtacatcaaa atgtgctgta aagtacgagt      5340
     taaaaaaatg ggaggataac caaatttctt ccacatggtt tgcaacacag gggtgtagac      5400
     aagccaaaaa cttcattaca ccaaaacctg caattaccaa taagcttatt ggtctaaaac      5460
     gtagtgaact gcgcactgta acggggctgc ttacagggca ctgtcctgca aagtatcacc      5520
     tcaaaaaact cggtatagtt gacaacgaca tatgccgctt ctgcaacaca gagctggaaa      5580
     gctctgcgca tttgctctgc acctgtggag caattgctac tcgaaggctg aattccctag      5640
     gaagtcgcct tctctcgcca tacgccgtat ggcgcactca tcccaaaaag atgatcagtt      5700
     tcatgaactg tatcatacca gaatgggata aaagcacagg tcagccaaca accaactcgc      5760
     tacccccagt caatgggtac gagtaaccgg ctaactgtgt agagtaaaca gggatacatc      5820
     acaaaagtta gtctcaagga cggacgaggt gatatcaaac ccaaaagccc aatttgggca      5880
     caaaaaaaaa aaataaaa                                                    5898
//
ID   LOA-6_CQ    repbase;    DNA;    INV; 2444 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2444
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 153-153 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2358
FT                 /product="LOA-6_CQ_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KVAWAVHSFEPFKSPGLDGIFPALIQHGGKKLIEHLS
FT                 NIFKASLTLGHIPQIWSKTRVVFIPKAGKKDKTIPKSFRPISLTSTMLKIM
FT                 EKIVDEYIKSKFLKKRPLSRFQFAYQSNKSTITALHELVTRIGKSLEIKEI
FT                 ALAAFLDIEGAFDNTSFNSIKNCMIKRGFDSCIVQWIMTMLDNRIVSAELG
FT                 ISTLTVKTTRGCPQGGVLSPLLWSLVVDDLLNKLTDDGFEVIGFADDLVIL
FT                 VRGKFDLTISERMQHALNLTSQWCRNEKLNVNAAKTVLVPFTRRRKLTLKT
FT                 LKINGLDLQYSKHVKFLGVLLDXKLNWNIHLEQVVNKATNALWISRKTFGK
FT                 HWGLKPKMIQWIYTAIIKPRITYAALVWWPKTKQTTTQKKLEKLQRLVCLS
FT                 ITGAMRSTPTKALNASLHIPPLYQFVQMEAAKSALRLKKIQSKVESIEHLK
FT                 IISFIKINQNVFMTSDWMESTLNLDEPFKVIETNRNEWESGGPRVLPGSVI
FT                 FYTDGSKMGNKTGAGITGPGVSVSIPMGQWTTVFLAEIYAILECASICLRR
FT                 NYRLAKICIFSDSQAALNALKSPTCQSKLVWECRKLLKQLASKNQVHLYWV
FT                 PGHRGIDGNEKADFLARNGSEGHFIGPEPFCGVSKSVLKMEFVKHEEKTIQ
FT                 SNWTKTQLLRQSREFITPSTQKSKKILNLNKKYLNIYIGLITGHCPSRYHL
FT                 KKLGLSQIDICRFCDCETETSKHLICDCSALSARRRQILNRPILSPKEIWQ
FT                 ENPSKVVDFILEIIPEWGIPQRQPMTATLNGNVSS"
XX
SQ   Sequence 2444 BP; 863 A; 459 C; 478 G; 641 T; 3 other;
     aaagtagcgt gggcagtgca ttctttcgaa cctttcaaat ctcccggatt agacggtatt        60
     tttccagctc ttatacaaca tggggggaaa aaacttattg aacacctttc aaatattttc       120
     aaagcaagtc tcactttggg acacattcca caaatatgga gtaaaactag agtagttttc       180
     attcctaaag ctggaaaaaa agataaaaca atcccaaaat cattcagacc aataagtctc       240
     acatctacaa tgcttaaaat tatggaaaaa atcgttgatg aatatataaa atcaaaattc       300
     ttaaaaaaac gtcctcttag caggtttcag tttgcttatc aatcaaacaa atcaacaatc       360
     acagccttac atgagctggt aacacgaata ggaaaatcac tggagattaa agaaatagct       420
     cttgcagcat ttctggatat mgaaggtgct tttgataaca cgtcattcaa ttctataaaa       480
     aactgtatga ttaaaagagg ttttgattcc tgcatcgtgc agtggattat gacaatgtta       540
     gataaccgaa ttgtctctgc agaattggga atatcaactt taactgtwaa aaccactagg       600
     ggatgcccac agggaggtgt attatctcct ctgttgtggt cactggttgt agatgatctt       660
     ctcaataaac tgacagatga tggatttgaa gttatcgggt tcgcagatga tttggttata       720
     ctagtacgtg gaaagtttga tctcactatc tccgaacgta tgcagcatgc tcttaatctc       780
     acttcccaat ggtgcagaaa tgaaaaactt aatgttaacg ccgcaaaaac agtcctggtt       840
     ccgttcacgc gcagaaggaa actgactctt aaaaccttaa aaattaacgg cttagattta       900
     caatactcaa aacacgtaaa attcttgggc gtgttgttgg acgamaaact gaattggaac       960
     atccatttag agcaggtggt taacaaagcc acaaatgctt tatggatcag cagaaaaacg      1020
     tttgggaaac attggggttt aaaaccaaaa atgatacaat ggatttacac agctattata      1080
     aaacctagaa taacatatgc cgctctcgta tggtggccaa aaacaaaaca aacaacaact      1140
     caaaaaaaat tagaaaaact acaacgctta gtttgtctct ctataaccgg ggcaatgcga      1200
     agtacaccaa ccaaagcctt aaacgcatct cttcacattc ctcccttgta ccagtttgtg      1260
     caaatggagg ctgcaaagag tgcgctgagg ttaaaaaaaa tacaaagcaa agtggaaagc      1320
     attgagcatc taaagataat atcttttata aaaattaacc aaaatgtatt tatgactagt      1380
     gactggatgg agagcacgtt gaacttagac gaaccattca aggtgattga aacaaatcgc      1440
     aatgagtggg agtcaggagg gcctcgcgtt ttaccaggat ctgtcatatt ttacacagat      1500
     ggttcaaaaa tgggaaataa gacaggtgca gggattacgg gtccaggagt tagtgtatcg      1560
     attccaatgg gtcagtggac aacagtattt ttggcagaaa tttatgctat cttagaatgt      1620
     gcatccattt gtcttagaag gaattacaga cttgcaaaaa tttgtatttt ctcagacagt      1680
     caagctgcgt taaatgctct aaaatcacca acatgccagt ctaagctagt atgggaatgc      1740
     aggaaacttt taaaacaatt agcatctaaa aatcaagtac atctgtactg ggttccgggc      1800
     caccggggta tagatggaaa cgaaaaagcc gactttcttg ctagaaatgg gtcagaaggg      1860
     cacttcattg gcccagaacc cttctgcggg gtctcaaaaa gcgtattaaa aatggagttt      1920
     gtaaaacatg aggaaaagac gattcagtcg aactggacga aaacacaatt actgagacaa      1980
     tctagggagt tcatcactcc ctctactcaa aaatcaaaaa aaatactcaa tctgaacaag      2040
     aaatatctaa atatctatat cgggcttata acaggacact gtccgtctag atatcatttg      2100
     aaaaagctag gtcttagtca aatagatatc tgtcggttct gtgactgtga aaccgaaaca      2160
     tcaaaacatc taatatgcga ctgcagcgca ctatctgcaa ggcgaaggca gattcttaac      2220
     aggcctattt taagccctaa agagatctgg caagaaaacc ccagtaaggt agttgatttc      2280
     attttagaaa ttatacctga atggggcata ccgcaacgtc agccaatgac cgctacccta      2340
     aatggtaacg tgtcatcctg aagtctgcga taataaaatg ggtataccgc aatagatcaa      2400
     agtcatggtc gcagtggtct caacccaaca aaaaaaaaaa aaaa                       2444
//
ID   LOA-7_CQ    repbase;    DNA;    INV; 2742 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2742
RA   Kojima K.K. and Jurka J.;
RT   "LOA non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 154-154 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           28..2646
FT                 /product="LOA-7_CQ_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KGRKTPDAAKLQKVLSKDHSNGLGSLKKNDGSFSKSD
FT                 EETLEIMMETHFPGSILAANEDLGTKSVDYGRDTTMEKSFVPKSIFTRAKV
FT                 AWAVSCFEPFKSPGRDGIFPALIQKGGGKLIECLTNIFKSSLELGHIPKIW
FT                 SQTRVVFIPKAGKRDKTAPKSFRPISLTSTMLKVMEKIIDEYIKSKFLHTK
FT                 PLSRFQFAYQQNKSTVTALNELVSRLGKNMSAKEIALAAFLDIEGAFDNAS
FT                 YKSIKKNMEKRGFEHCITRWVMAMLDSREVFAELGGSSVTVKTTRGCPQGG
FT                 VLSPLLWSLVVDDLLKKLSELGFEVIGFADDVVILVRGKFEEIITERMQYA
FT                 LNCTFEWCKNEGLNINPKKTVVVPFTRKRKILLKTLTLDGSALEFSKNVKY
FT                 LGITLDAKLNWNLHLDQAVQKATTALWVSRKTFGMKWGLKPKMISWIYSAI
FT                 IRPRLTYAALVWWPKTKQKTAQKKLEKLQRLICISITGAMRSTPTNALNAA
FT                 LHLLPLYQYVQMEAGKSALRLRRNENLFKNCKEHLGILKELNIDPHVFMNE
FT                 DWMEYTLNLDITYKVILTDRQVWESGGPSLPPGAIIFYTDGSKMGNKTGAG
FT                 ITGPGLSISAPMGRWTTVFLAEIYAILECASACLKRNYRYSTICIFSDSQA
FT                 ALNALNSSKCQSRLVWECVILLKKLGNKNRVFLYWVPGHCGVEGNEKADLL
FT                 ARKGSDDLFVGPEPFCGVSKCVLKMEITKWENSMIQQNWIASHSAKQSKLF
FT                 ITPSKQKTSRILGLNKRSLNIYIGLITGHCPSRYHLKKLTRSQTDICRLCD
FT                 CEVETSRHLLCECGALIAKRIKFFNKGILTPSEIYSENPTSVVDFILEAMP
FT                 NWGISHPQSVAVTLNGDLSP"
XX
SQ   Sequence 2742 BP; 915 A; 497 C; 607 G; 723 T; 0 other;
     gaggaaaaac tggaggttct actgtgaaaa ggtagaaaaa ccccagatgc ggcaaaatta        60
     cagaaagtgc tttcgaagga tcattcaaat ggtttaggaa gtttaaaaaa gaatgatgga       120
     tcgttttcta agagtgatga agaaacactg gaaataatga tggaaaccca ctttccagga       180
     tcaatattgg cagcaaacga agatctcgga acgaaaagcg ttgactatgg ccgtgacacg       240
     accatggaaa aatcttttgt accgaaaagc atcttcacgc gggctaaagt tgcttgggca       300
     gtgagttgtt ttgaaccatt caaatctcca ggcagagatg gaatatttcc cgcccttatt       360
     caaaaaggag gtgggaaact gattgaatgc ttaacgaata ttttcaaatc aagtctagaa       420
     ttaggacaca ttccaaagat atggagtcaa acacgcgttg tcttcatacc taaagctgga       480
     aaacgagaca aaacggctcc taaatcattt aggccaataa gtctcacgtc cacaatgctg       540
     aaagtaatgg aaaagataat tgatgaatat attaaatcaa agtttttgca cacgaaacct       600
     ctcagtaggt ttcagtttgc ttaccagcag aacaaatcga cagttacagc attaaacgag       660
     ctagtttcaa gattgggaaa gaatatgagt gcaaaagaaa ttgccctcgc tgcctttctc       720
     gatattgaag gagcttttga taatgcatca tataagtcta taaaaaagaa tatggaaaag       780
     cgaggctttg agcattgcat cacacgatgg gtcatggcca tgcttgatag cagagaagtg       840
     ttcgctgaat taggaggatc ttctgtgact gtaaagacca caagaggctg tcctcaaggg       900
     ggcgtgctgt ctccattgct gtggtcatta gttgtagacg accttctgaa gaaactatct       960
     gaattggggt ttgaagtaat tgggtttgct gacgatgtgg taatactagt ccgagggaaa      1020
     tttgaagaga taattaccga aagaatgcaa tatgccctca actgtacttt tgagtggtgc      1080
     aaaaatgaag ggcttaacat aaaccctaag aagactgtag ttgtcccgtt tactcgtaag      1140
     agaaagatcc ttcttaaaac tcttactcta gatgggtccg ctttggaatt ttctaagaat      1200
     gtgaagtatc tggggatcac tctagatgca aaattaaact ggaacttaca cttagatcag      1260
     gctgttcaaa aagccacaac tgcattatgg gtatctagga agacctttgg aatgaaatgg      1320
     ggacttaaac cgaagatgat atcctggatc tattcggcca taataagacc cagattaact      1380
     tacgctgcct tggtatggtg gccaaaaaca aaacaaaaaa cagcgcaaaa aaaactagaa      1440
     aaattacagc gtttaatctg catatccatc actggagcaa tgcgaagtac accaacgaat      1500
     gctctaaatg ctgctcttca tctcctcccg ttgtaccaat acgttcaaat ggaggctgga      1560
     aagagtgcgc ttagactaag aagaaatgag aatttattca agaattgtaa ggaacatcta      1620
     ggaattttaa aagaacttaa catagatcca catgtgttta tgaacgagga ctggatggaa      1680
     tataccttga accttgatat aacatacaaa gtgattttaa ctgatcgcca agtatgggaa      1740
     tcaggaggtc caagcctacc tccgggagca atcatattct acacggatgg atcaaaaatg      1800
     ggtaataaaa caggagcggg gatcacgggg ccaggactaa gtatttcggc tcctatggga      1860
     cgctggacta ctgtattttt ggccgagatc tatgctattt tagaatgtgc atcagcatgt      1920
     ctgaagagaa actataggta ttctacaatc tgtattttct ctgatagtca agctgctttg      1980
     aatgctttga attcttccaa atgccaatct agattggttt gggagtgtgt aattcttctg      2040
     aaaaaactgg gtaataaaaa tcgagtattc ttgtactggg ttccaggcca ctgcggggtt      2100
     gaagggaatg aaaaggccga tttgcttgcc aggaaaggct cagatgacct ttttgttggt      2160
     ccggagccat tctgtggagt gtcgaaatgc gttctgaaaa tggaaattac aaaatgggaa      2220
     aattccatga tacaacagaa ttggattgcc tcgcattctg caaagcaatc caagttgttt      2280
     atcaccccta gcaaacagaa aacgtcgcga atacttggtc tgaataaacg gtcactaaac      2340
     atatacattg gattaattac aggacattgc ccatcacggt atcacttgaa aaagctaacg      2400
     cgaagtcaaa ctgatatctg taggctctgt gactgtgaag tggaaacttc aaggcactta      2460
     ctgtgtgagt gtggtgcact gattgcaaaa agaattaaat ttttcaataa agggatttta      2520
     actccctcag aaatttattc agaaaatccc acttcggttg ttgacttcat tctcgaagca      2580
     atgccaaact ggggtatatc gcatcctcag tcagtggcgg tcaccctaaa tggtgacttg      2640
     tcaccctgaa aatatgcgac agtaattagg ggtacactac aatagatcaa ctaaatggtc      2700
     gcagtagtct taaatcccac aaaggaaaaa aaaaaaaaaa aa                         2742
//
ID   LOA-8_AAe   repbase;    DNA;    INV; 5846 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5846
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1418-1418 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           692..2086
FT                 /product="LOA-8_AAe_1p"
FT                 /translation="MSFITNVKGSNCSQPEEMETECILGVEELMENQLLRE
FT                 SGSEDQSCSSSILDTPKRVDQIDSESDDDINVTIRPAVADKIDRASLENEE
FT                 GVKIKWRKNLTNGQRNKMKKLLKSGLSMEEARMKVLSKDAPETPNVGKRSR
FT                 DGDQGGSGEKPEAKRTKSHLCPKERAGLTNYDNRATSRKQNDRSVNEAERT
FT                 KEVNERPRSSKADSNSRGHSFRDVASLVKVGIILNGFPSRQMSTAQLDAVQ
FT                 DALLLKIEEQRHATVKPKFTKCSYKQGHLILACKDQATALWLKDVTRSLTP
FT                 WENAELLALDEKDIPRPELFHAFFPVSANFSDERLKGLIESQNDGINTNGW
FT                 NILNRTNANKHAEWKLYLDEESLRTLADRNFVLNFRFGETQLRKVKTQGRS
FT                 QDDGNTNGNEPELNVEQETTPNDLKTETSGAKIEALTEAVNYKRSQLEVHD
FT                 RPIAPPKGKQERITGKNEAN"
FT   CDS           2076..5732
FT                 /product="LOA-8_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKLIKFLQVNLHHAKGASAVLSRRFKKEGLDMALLQE
FT                 PWSNKGKILGIQIQKCKLFYDENQSSPRTAILVNNTMKCYPITEFIKRDIV
FT                 AVVVEVPTSRGKTEIIVASAYFPGDVPEVPSPEITSFIRYCREVNKSFIIG
FT                 CDANAHHTVWGSTDINGRGECLLEFLSSNGIDICNKGNKPTFLNAIREEVL
FT                 DLTLCNSAISEKIRNWHVSDETSLSDHKHIVFEWGGGDLSPTAYRNPRKTN
FT                 WGHYANHLKSDTFTNEISIKTIQQLESFSQEVNEVILKAYNNSCPIRQSSS
FT                 SRDVPWWNSKLESLRKTSRKLFNKAKRTSDWAQYRRALTEYNNELRKSKRR
FT                 TWIHMCESIDNTPIVARLQKTLAKNHTSELGNLKRQDGVYTKTCNETLDLM
FT                 MDTHFPGAASGEDIQYTGVQGGSMQTIPEVCSIENPTPDKADKIFTFARVE
FT                 NAVRSFQPYKSAGVDGIFPALLQNGEAVLIPSLMKIFKASLRLNYIPSEWR
FT                 LVRVIFIPKPGKRDKTNPKSFRPISLSSVLLKTMEKVLKDYVNSTYMQTYP
FT                 LSKYQYAYQAGKSTVTALHTLVDKVERSLSVKEIALCSFLDIEGAFDNTSY
FT                 SSIANAMKKRNFNTCIVDWIHTMLAKREITSELGGSSVTIRATKGCPQGGV
FT                 LSPLLWSLVVDDLLRSLEAKGFEVVGFADDIVIVVRGKFDNIISERMQQAL
FT                 KYTQSWCIKEGLSINPSKIVIVPFTKKRKVNLKSFKIGEVEIQVSSQVKYL
FT                 GVILDAKLSWNAHLDSTINKAINALWLCSKTVGRKWGLRPKMIMWIYTSII
FT                 RPKITYASLVWWPKTREATAGMKLAKLQRLACIAITGAMRSTPSKALDAIL
FT                 NLLPLHEYVQLEAERSALRLKRSKNVLPGDLIGHLSILQHFKRGPVMSMNG
FT                 DWMRPEDNYDFLYKVSEMTRTSWDVGGPTVREGSIIFFTDGSKIGTNTGAG
FT                 IFGPGVNISVAMGHWPTVFQAEIFAILECVNVCLKRKYRYANICIFSDSQA
FT                 ALNALSAYKCTSKLVWECILSLRQLCESNSVNLYWVPGHCGIEGNEKADDL
FT                 AKRGSNSQFVGPEPFCGIPNCAVKMELKCWEEQKVMTNWMDVKKCTQSKRF
FT                 ITPNANKTKKILELNKRALCTYTGLVTGHCPSKYHLKNIGQVQNDICRFCN
FT                 IESETSEHLLCSCGALYRRRSKFLDSGCLQPSEIWSADPRKVIGFINHIIP
FT                 DWERVMVSS"
XX
SQ   Sequence 5846 BP; 1912 A; 1062 C; 1307 G; 1565 T; 0 other;
     tctggcaaca ctgtttcaag tggacaacaa cgtcttcctc gagctcgttt taattttgca        60
     tttcttagtg aaatacggca tattaaattg tgagtgatag tgcgttattt aggtcataac       120
     tgccggtgaa ggaaaagtcg ttgtacaggt gagaaacagt agtgaattgt gatattttcc       180
     tccgtgaatt gtgtgtgcga tgcaatgggg aaaattaaac aataaaagaa acgccaaaca       240
     tgataagctc cagctgcaag agtagtcttg ttggggtgag cttttaaaag cttgcatttc       300
     ttgtatgcaa tattgtatgt aaacttgcag atgcaggttt ggttaaactt gtatcggatc       360
     agtgatgcta gtttcattga aacgcaatgt gaaagaaagg caaaatattg ttctgtgtta       420
     ttattattat tttttttttt ttttttatta ttattattat tactattatt tattattatt       480
     atttttatct ttcctactta aatacttatg caattcgcaa tactcattaa gttgacttaa       540
     attaataaat tatcaaatag acgaacaaaa taaacattaa cgacagtctt atactttaac       600
     aattttgttt actttggaat tttcggtttc agttacatac atacgttaca ctcagctaat       660
     ttatccgcaa tagcaatctt ccggaatcag catgagcttc attacgaatg tcaagggttc       720
     caactgttct caaccggaag agatggaaac ggaatgtatc ctaggtgttg aggaattaat       780
     ggagaatcaa ttgttgagag aatctggctc agaggaccaa tcgtgttcct cttccattct       840
     cgatacccct aaacgtgtcg atcaaatcga tagtgaaagt gatgacgata taaatgtcac       900
     tatcaggcct gcagtagcag ataagataga tagagcatca ttggaaaatg aagaaggcgt       960
     taaaattaaa tggcgaaaaa atctgactaa tggtcaacgg aacaaaatga agaaactact      1020
     caaatctggg ctatccatgg aggaagctcg gatgaaagta ctttcaaaag atgctcctga      1080
     gactccaaat gttggtaaac gatcaagaga tggcgatcaa ggtggtagtg gcgaaaagcc      1140
     tgaggccaaa aggacgaaat ctcatctctg tccgaaggaa cgtgctggat tgaccaacta      1200
     tgataaccgg gctacgtcta gaaagcagaa tgaccggagt gtcaatgaag ctgaacgaac      1260
     taaggaagtt aatgaacgtc ctagaagttc aaaggctgac tcgaactcaa gaggtcactc      1320
     tttcagggac gtggcgagcc tggttaaagt tgggataatc ttgaacgggt tccctagcag      1380
     gcaaatgtcg acagctcaac tcgatgctgt acaagacgct ctgcttctaa aaattgaaga      1440
     gcaaagacac gcaacagtga aaccgaagtt tacaaaatgt agctacaaac aagggcattt      1500
     gatccttgct tgcaaggatc aagcaacggc gttgtggctt aaagatgtta ctcggtcact      1560
     cactccctgg gaaaatgcgg agctacttgc tttggatgag aaggatattc ctcgcccgga      1620
     gctgttccat gcattttttc ccgtgagtgc gaacttcagt gatgaaagac taaaagggct      1680
     catagagagc cagaacgatg ggattaatac aaatggctgg aatattctta atcgaacaaa      1740
     tgcgaacaaa catgcagaat ggaagttgta cttggacgaa gaatcgctaa gaacgttagc      1800
     tgatcgcaac tttgtcctta actttcgttt tggcgaaacg cagttgagga aagtcaaaac      1860
     ccaaggccgt agccaagacg atggcaatac gaacgggaat gagccggaac taaatgtaga      1920
     gcaggaaaca acgcccaacg acttgaaaac agaaacaagt ggagccaaaa tagaggcctt      1980
     aactgaagcg gtaaactaca aaagatccca actggaagta cacgataggc ctatcgctcc      2040
     cccaaaagga aaacaggagc gtataactgg gaaaaatgaa gctaattaag ttcctgcagg      2100
     tgaacctcca tcatgctaaa ggcgcttctg ccgtattaag ccggaggttc aaaaaggagg      2160
     gactggacat ggccctacta caagagccat ggtccaacaa aggaaaaatt cttggaattc      2220
     aaatacaaaa atgtaagttg ttttatgacg agaatcaaag ttcaccgaga actgcgattc      2280
     ttgttaataa tacaatgaaa tgctacccta ttacagagtt catcaaacgt gacatagtgg      2340
     cggttgtggt tgaggtacca acctccaggg gaaagacgga aatcatcgtg gcttcagcgt      2400
     atttccctgg cgatgttcct gaggtacctt ctcctgaaat tacatctttc attcgatact      2460
     gccgggaagt caacaagtcg ttcatcatcg gctgcgatgc caacgctcat cacactgtgt      2520
     ggggtagcac cgacatcaac ggtcgaggtg agtgtctatt agaattccta tcatcgaatg      2580
     gtattgatat atgcaacaag ggtaataaac caacatttct aaatgcaatc agagaagagg      2640
     ttttagattt gacgttgtgt aactctgcaa tttctgagaa aattcggaat tggcatgtct      2700
     cagatgaaac ttcattatcg gatcataaac acattgtttt tgagtggggt ggaggcgact      2760
     tatcaccaac agcatatcgt aatcctagaa aaacgaactg gggtcattat gctaatcact      2820
     tgaaatctga cacttttaca aatgaaatta gtattaagac aatacaacaa cttgaatcat      2880
     tttcgcaaga ggtaaacgaa gtgattctaa aagcatataa taatagttgt cctatcaggc      2940
     aatcgtcctc tagtagggac gtaccatggt ggaactcaaa attggaaagc cttagaaaaa      3000
     catctcggaa attgtttaat aaagcaaaac gaacctcaga ttgggctcag tatagaagag      3060
     ctctaactga atacaataac gaattaagga aatcaaagag aagaacttgg attcatatgt      3120
     gcgagagtat agataataca ccaattgttg ctagattaca gaaaactctt gctaaaaacc      3180
     atacttctga acttggcaac cttaaacgcc aagatggggt gtatactaaa acttgtaatg      3240
     agacacttga tttgatgatg gatactcatt ttccgggagc ggcttcaggc gaggatatac      3300
     agtatactgg agtgcaagga ggctctatgc agaccatacc ggaggtctgc agtatagaaa      3360
     atccaacacc agataaagct gataaaatct tcacgtttgc aagagtggaa aatgcagtga      3420
     gatctttcca gccttataaa tctgcaggtg tggacggaat atttccagca ctacttcaaa      3480
     acggagaagc ggttctgatt ccgtctctta tgaagatttt caaggcaagt ttaagattga      3540
     actatattcc atcagaatgg aggttggtaa gagtcatatt catacctaag cctgggaaac      3600
     gagataaaac gaacccaaaa tcttttagac ccattagttt gtcatcagtt ctgttgaaaa      3660
     ctatggaaaa agtattgaag gattacgtaa actcaactta catgcagaca tatccattgt      3720
     ctaaatatca gtatgcgtat caagctggaa agtcgacagt cacagcgctt catacgctgg      3780
     tagataaagt cgaaagatct ctttcagtga aggaaatcgc actctgttct ttcttggaca      3840
     ttgaaggtgc ttttgacaac acttcatatt cttcaatagc aaatgctatg aaaaaacgaa      3900
     atttcaacac atgcattgtc gactggattc atactatgct agcaaaaaga gaaatcactt      3960
     cagaactggg tggttcgtct gtaaccataa gggcgacgaa aggatgtccg caaggtggag      4020
     tactttcgcc acttttatgg tctttggttg tagacgacct tctcagaagc ttagaagcta      4080
     aaggtttcga ggttgtaggc tttgcggatg atatagtcat cgtagtaaga ggaaagtttg      4140
     acaacataat atcggaaaga atgcagcagg ccctaaagta tacccaatca tggtgtataa      4200
     aggagggtct aagcattaac ccgtcaaaaa tcgtgattgt cccattcact aaaaagagga      4260
     aagtcaactt aaaatctttt aagattggag aagttgaaat tcaagttagc agtcaggtaa      4320
     aatacttggg agtaatctta gatgccaagc ttagctggaa tgcgcatctt gactctacga      4380
     ttaataaagc gatcaacgca ttatggttat gctccaaaac tgtcgggagg aagtggggct      4440
     tgaggccaaa aatgattatg tggatttaca catctattat acgaccaaaa attacctacg      4500
     cttcattagt gtggtggcct aaaaccaggg aggctactgc aggaatgaaa ctagctaagc      4560
     ttcaaagact tgcgtgcatt gctataacgg gagcaatgcg cagcactcca tcgaaagcgt      4620
     tagatgctat tctcaatctg ctgcctttgc acgaatatgt gcaattagaa gcggaaagaa      4680
     gtgctctaag gcttaagagg tctaaaaatg ttttgccagg tgatcttatt ggccacttga      4740
     gcattttgca acactttaaa agaggaccgg tgatgagtat gaacggagac tggatgagac      4800
     ctgaggacaa ctatgatttt ctctacaagg taagcgaaat gacgcgtaca agttgggatg      4860
     tcggaggtcc cacggttcgt gaaggctcaa tcatattctt tactgacggc tcaaaaattg      4920
     gaacaaatac aggggctggg atctttggac ccggagtaaa tatttcagtt gcaatgggac      4980
     attggccaac agtgtttcaa gctgagattt ttgcaatact tgaatgtgtg aatgtctgtc      5040
     tgaaaagaaa atacagatat gcaaatatat gtattttctc tgatagtcaa gcagctctaa      5100
     acgcattaag tgcatataaa tgtacatcaa aactcgtctg ggaatgtatt ctctcgttgc      5160
     gacagttgtg tgaatcaaac tcggtaaatt tgtactgggt tccaggacac tgtggcattg      5220
     aagggaatga aaaggcagat gatcttgcaa aacggggctc aaattcacag tttgttggcc      5280
     cggaaccatt ctgtggtata ccaaactgtg cagtaaaaat ggaacttaag tgctgggaag      5340
     aacaaaaggt gatgaccaac tggatggatg tcaaaaagtg tacccagtct aaaagattta      5400
     taactccaaa cgcaaataaa actaaaaaga ttttagagct caacaagagg gctctttgta      5460
     catacactgg cctagtaact gggcactgtc cgagcaaata tcatttgaag aacattggcc      5520
     aggttcagaa tgatatttgt cgcttttgta atattgaaag tgaaacctcg gaacatctgc      5580
     tttgcagttg tggtgcatta tacaggcgca gatcaaagtt tctcgatagc ggctgtttac      5640
     agcccagtga gatctggtct gctgatccga gaaaggtgat tggtttcata aaccatatca      5700
     tacctgattg ggaacgtgtc atggtaagca gctgatcgtc taatcaatgg tgttcggcta      5760
     gcgtgacatg tacagtaaac tgggacatac tacaatagtt ctaaatattg gacgcagtag      5820
     tttcaacccc caacaaaaaa aaaaaa                                           5846
//
ID   LOA-9_AAe   repbase;    DNA;    INV; 6136 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LOA-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6136
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1419-1419 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           559..2211
FT                 /product="LOA-9_AAe_1p"
FT                 /translation="MSATDAKLMEIDETEGAVDSCSAESVPSCSSSILDTP
FT                 IDGDDDYEDDDDFEDGINVTILSTTTKSLLEDCSTTENPVVKTSVTDPICT
FT                 DDKQQTKLNGAARKRYKRMIDAGVDPEEAYRLARIPCQPPSSEKRSRNDDL
FT                 NGSNSSDGNPRKKKNLCPVLEPKHGLNRPISGKFSVQNRLQINTNARSGRI
FT                 ETIQSGSNPSFSAVVQYVRVGIVPKDYPDVELSSQQLLATRKAILAKVVQQ
FT                 RKETVKPKFGQCSFRTGHLILVCKNQETADWLKSIASTLSIAGEVELVALD
FT                 ENKIPRPEIIIGFFPVSAEDSTDEILALLESQNDGLNTDEWRIKERKIINQ
FT                 LHVELIFTVDGASMDTIKKCEFLLDYKFGTAPLRRKLPPKHKTPDNSDESV
FT                 DKSGDNLKPAEQHTALSGVGENKQTKIPTEHLKDTGDSARGNKSNPNLNRP
FT                 GTSGIGSTGNLGYPKISKEPRCVDVGSENTSQESSGPKALLGSKRYAKNSP
FT                 INHGQTKTVLDNKDPVHKNKYISKYIKSLGNHETNIGGLKSPQESETSKNN
FT                 ASEK"
FT   CDS           2198..6013
FT                 /product="LOA-9_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MQVKSNECNNLNKHILRNNITRTNNTSITNTNIDTNT
FT                 TINNQANKQIKFVQINLHHAKGASAVLHKTFTHSKLDIALIQEPWTYNSRV
FT                 LGIXVSSSKLIYDENQTAPRTAILVNSRIXFLPVTEFIKRDIVAILMEIPT
FT                 SRGVAEMYVASAYFPGDAEDIPPHDVSNFVSFCKRKNKPFIIGCDANAHHT
FT                 VWSSTDINDRGENLLEYIINNNIDICNKGCKATFVNSIREEVLDLTLCSAN
FT                 ISENLKNWHVSNETSLSDHRQILFEYQANYVQTEAYRNPRKTNWDLYYSKL
FT                 LTECKLPDKNINTVQELEKVSVXMLXSVQEAFHASCPITVRSTNRDVSWWN
FT                 KRLEILRKNTRKLFNRAKRTREWDQYKIALTEYNKEIRRSKRLDWRHTCES
FT                 IENTPVVARLQKVLSKDHTNGLGTVKKENNCLTSNAKETLEVMMQTHFPDS
FT                 VLISNNDENMLENIIGNETTEMNSHGEHSNNFSTSCCDAKNIAEQIFTVSK
FT                 VDWAINSFDAFKSPGVDGIFPAFLQKSNGILTPYLCNMFKASIILGYIPKS
FT                 WRQIRVIFIPKANKKDKTSPKSFRPISLSSIMLKIMEKLIDQYVKSTYMRK
FT                 YPLNNNQFAYQTGKSTTTALHALVTKIEKTYEAKEILLATFLDIEGAFDNA
FT                 SHRSMTRTMLKREFDICIVQWINEMLSKREISAKLGSSLISVKAVKGCPQG
FT                 GVLSPLLWSLVVDELLASLEAQGFEVIGFADDIVIIVRGKHDNIIASRMQA
FT                 AINYTIKWCESEGLDINPQKTSIIPFTKKRTFKISDLRMRGTLMTLSSNVK
FT                 YLGVILDRKLNWSLHLSNILDKAANALWISKRTFGNKWGLRPAMIHWIYMA
FT                 IVRPRITYASLVWWPKTLEKCAIKKLEKIQRLATISITGAMRSTPTKALDA
FT                 MLNLLPLYQFVQLEAGKAALRLKRTTVFYDGDIKGHLEILKKVLINPLVTV
FT                 NNDWMETTFNFDRRYNVVEPDRSVWDVGGPQIRSGSIVFYTDGSKQNDQVG
FT                 AGVTGPGVCLSVSMGRWPTVFQAEIQAILECASICLKRKYKHSNICIFSDS
FT                 QAALAALKSYTCTSKLVWECTLLLQKLSVNNTIVLYWVPGHQGIQGNEKAD
FT                 ELARVGSSQHLQGPEPFCGVSPCSIKMELRNWEKAMVNTNWNKTVXARQSK
FT                 KFITPNKSNTQKLLALSKKDLCAYTGLITGHCLVKYHLRLIKRIEDDICRF
FT                 CSEETETSEHLLCNCVALFAVRLKYLDQGFLQPSDIWSLAPFKVVRFIRHI
FT                 IPHFENTEIMS"
XX
SQ   Sequence 6136 BP; 2129 A; 1129 C; 1183 G; 1689 T; 6 other;
     agtttggcaa ccctgccgtg atatagtggc gatttttatc ggctcgtgtt tatcctcgat        60
     ttaccgttga aaacgaaaga tttaatcgca agtgcactat tggcatacta tttggtgaac       120
     tgattaacga aaagtgtgtt waaaaggtag ggtttgaagt tattttgcga caaaatacgc       180
     ttcttatttt ttcctgacag tgagtttttg ttctgatagt gatacttttg tgcacaatac       240
     attgatgcta acaatagtaa ataagtgtta tacgttccac cttgaacata ctttccctct       300
     ctatcgtcta cttgcatgca agtcgtttct gtgttgtgga gaaaaagaat accaccaaac       360
     ttacaataaa tggatacagt ttagtacatg tcttagttcc atcattcttg gctctgattc       420
     agaacaaaat ttgttgttct acgagtatca atgtttacat atgatatatg ttgtttcact       480
     actggcagtg gaatttcttt gatccaatgt acttagattt cacaactctg tttaaaacac       540
     tatgctttca gcaacagaat gagtgctacc gatgcaaaac tgatggagat tgatgaaaca       600
     gagggagcag tcgatagttg ctcagctgaa agtgttccat catgctcatc atctatctta       660
     gatactccga ttgatggtga cgatgactat gaagacgacg acgacttcga agatggtatc       720
     aacgtcacca tattgtcaac tactaccaaa agccttctcg aagattgttc gacaactgaa       780
     aatccagttg ttaagactag tgtgacagac ccaatttgta cggatgacaa acagcaaacg       840
     aagttgaatg gagctgcacg gaagcggtat aagcgaatga ttgatgctgg agttgatcca       900
     gaagaagcat atcgcctcgc tcgaattccg tgtcagccgc cgagttctga aaagcggtca       960
     cgtaatgacg atcttaacgg ttctaacagt agtgatggaa atcctcgtaa aaagaaaaat      1020
     ttgtgtcctg ttcttgaacc aaaacacgga ttaaaccgcc caatctcggg aaaattttcg      1080
     gttcaaaatc gtttacaaat aaatacaaat gcacgctctg gacgaattga aacgatacag      1140
     agcggaagca atccatcttt tagtgccgtt gtacaatacg ttagggtagg aatcgttccg      1200
     aaggactacc ccgacgtaga actttcttcc cagcaattgc tagcaacacg aaaagctatt      1260
     ttggcaaagg ttgtacagca acgcaaagaa acggtgaaac ctaaatttgg tcaatgttca      1320
     ttcaggaccg ggcatttaat tctagtctgc aaaaaccagg aaacagctga ctggttgaaa      1380
     agtatagctt ccacactatc tattgctgga gaagtagaac ttgttgcttt agacgagaat      1440
     aaaattcctc gtcctgaaat aattatcggg tttttcccag tgagtgctga agacagcact      1500
     gatgagattc tagcgctcct ggaaagccaa aatgacggtt tgaatactga cgaatggaga      1560
     ataaaggaga gaaaaattat caatcaactg catgttgaat taatttttac agtagatgga      1620
     gcttcaatgg acacgatcaa gaagtgtgaa ttccttcttg actataagtt cggaacagct      1680
     ccacttcgcc gtaaacttcc tccaaaacac aaaacgcccg ataactcgga cgaaagtgtt      1740
     gacaaatctg gtgataattt gaaaccagca gagcagcaca ctgctctgtc tggggtagga      1800
     gaaaataagc agacgaagat ccctacagaa cacttaaagg atactggaga ctctgcacga      1860
     ggaaataaat cgaatccaaa tctaaaccga cctggtacta gtgggattgg gagtacaggt      1920
     aatctgggct acccaaaaat ctctaaagaa cctcgctgcg ttgatgtagg atcggaaaac      1980
     acttcccaag agtcttcagg acctaaagct ctattgggat cgaaacgata tgctaaaaat      2040
     tcccctatca atcatggtca aacaaaaaca gttttagaca acaaagaccc tgtacataaa      2100
     aacaaatata tttctaaata cataaaaagt ttgggtaatc acgaaaccaa catagggggg      2160
     ctaaaatcac cccaagaaag tgaaacttct aagaataatg caagtgaaaa gtaatgaatg      2220
     caataatttg aataaacata ttttgaggaa taacattacg cgaaccaata atactagtat      2280
     cacaaatacc aacattgata ctaacacaac catcaataat caagcaaata agcagattaa      2340
     atttgttcaa ataaacttac accatgcgaa aggcgcatct gctgtactac acaaaacgtt      2400
     cactcacagc aaactggaca ttgcactgat tcaggagccg tggacgtata atagtagagt      2460
     attaggcata scagtatctt ctagcaaact tatttatgat gaaaatcaaa ctgccccccg      2520
     aactgctatt ctagtcaata gtaggattaa ktttttgccg gtaacagagt tcatcaaaag      2580
     agatattgtt gcaattttaa tggaaattcc tacttctcgt ggagtagcgg aaatgtatgt      2640
     tgcatccgct tactttcctg gagatgcaga agacattcct ccccatgacg tttcaaattt      2700
     tgtttctttt tgcaaacgta aaaacaagcc cttcataata ggatgtgatg cgaatgctca      2760
     tcacacagtt tggagtagca ccgatataaa tgataggggg gaaaacctcc tagaatacat      2820
     aatcaacaat aacattgaca tttgtaacaa aggatgtaaa gcaacctttg ttaattccat      2880
     cagggaagaa gttttggatt tgacactttg tagtgcaaac atctcagaaa atttaaaaaa      2940
     ctggcatgta tcaaacgaaa cttccctgtc tgaccacaga caaatattgt ttgaatatca      3000
     agcaaattat gttcaaactg aagcttatcg caaccctcgt aaaacaaatt gggatttata      3060
     ttactcaaaa cttttgactg agtgtaaact tcctgacaag aacataaaca cagttcaaga      3120
     acttgaaaaa gtttcggtas tcatgttaca wtcagtccaa gaggcattcc atgcgagttg      3180
     cccaatcact gtacgttcca caaacagaga tgtttcgtgg tggaataaac gcctagaaat      3240
     tcttagaaaa aatactagaa aactattcaa tagagcaaag aggaccaggg aatgggacca      3300
     atataaaatt gctctgactg aatataataa agaaataaga agatctaaaa gactggactg      3360
     gagacataca tgtgaaagca ttgaaaacac tcctgtagtt gcaagactac aaaaagtcct      3420
     atcgaaagat catacaaatg gtttaggtac tgtaaagaaa gaaaacaact gcctaacatc      3480
     gaacgcaaaa gaaacgttgg aagttatgat gcagacacat tttcctgatt ctgtactgat      3540
     tagtaataat gatgaaaaca tgttagaaaa cattatcggt aatgaaacaa ccgagatgaa      3600
     cagtcatggt gaacacagta ataacttctc gacctcttgt tgtgacgcaa aaaatatagc      3660
     tgaacaaatt tttactgtat ctaaggttga ttgggcaatc aattcatttg atgcattcaa      3720
     atctcctggt gtagatggaa tatttccagc atttttgcaa aaaagtaatg gtatccttac      3780
     cccatatctt tgtaatatgt ttaaagcaag tattatactt ggatacatac ccaaatcatg      3840
     gcgacagatt cgagtgattt ttattccgaa ggctaacaaa aaagataaga cttctcccaa      3900
     atcattcaga ccaataagtt tgtcatctat aatgctcaaa attatggaaa aacttattga      3960
     tcaatatgtt aaatctactt atatgagaaa gtatcctcta aataataatc aatttgctta      4020
     tcaaactggt aaatcaacta caactgcgtt acacgcactt gtaactaaaa tagaaaaaac      4080
     gtatgaagca aaagaaattt tactagcaac ttttctagat attgaaggag cgtttgataa      4140
     tgcgtctcat agatccatga cgaggacaat gttaaagcga gagtttgaca tatgtatcgt      4200
     tcaatggatt aatgaaatgc tatcaaaacg tgaaatatca gcaaaactcg gtagttcatt      4260
     aatatctgtt aaagcagtga aaggatgtcc acaaggaggc gttctttcgc ctcttctctg      4320
     gtcacttgtt gttgatgaat tactggcaag tttagaagca cagggatttg aagtaattgg      4380
     gtttgcagat gacattgtta ttatagtcag aggaaaacat gacaatatca ttgcaagcag      4440
     aatgcaagca gctataaact acacaattaa atggtgcgaa tctgaaggac tggacatcaa      4500
     tcctcaaaaa acaagcatca ttccgtttac taagaaaaga acattcaaga tatctgatct      4560
     tcgtatgaga gggactttaa tgacactttc atcgaatgtt aaatatctgg gagtcatttt      4620
     agatcgtaaa ttaaactgga gtctacatct aagtaacata ctcgataagg cagcaaatgc      4680
     actatggata agtaaaagaa cttttggaaa taaatgggga ttgcggccag ctatgatcca      4740
     ctggatatac atggctattg tgagacccag aattacgtat gcttcattag tatggtggcc      4800
     gaagactttg gaaaagtgtg caataaaaaa attagaaaaa atacaaaggc tggctactat      4860
     atccataaca ggcgcaatgc gcagcacacc tacaaaagca ttagatgcaa tgcttaatct      4920
     actccctctg tatcaattcg ttcaactaga agctggaaaa gccgcactac ggcttaaacg      4980
     aactacggtt ttttatgatg gtgacataaa aggtcatttg gaaattttga aaaaagttct      5040
     aattaatcca ttagttacag tcaacaatga ctggatggaa acgacattta attttgatcg      5100
     taggtacaat gtagtagagc cggatcgctc tgtctgggat gtgggaggac cacaaattcg      5160
     ctcaggttca atagtcttct atactgacgg ttccaaacaa aacgatcaag tgggagctgg      5220
     tgttacaggt cccggtgtat gtttatcagt ctcaatgggt agatggccaa ccgtcttcca      5280
     ggctgaaata caagctatac tagaatgtgc ttctatttgc ttaaaaagaa aatacaagca      5340
     ttccaacata tgcatttttt ctgatagcca agcagcgctc gctgctttga aatcatacac      5400
     atgtacttcg aagttggttt gggaatgtac tctattactt caaaaattat cggtaaataa      5460
     tactatagtt ctttactggg tgcctgggca tcagggaata caaggaaatg aaaaagcaga      5520
     tgagctggca agagttggat catctcaaca tttacaaggg ccagagcctt tctgtggagt      5580
     ctcaccatgc tccattaaaa tggagctcag gaactgggaa aaagccatgg taaataccaa      5640
     ctggaataaa actgttgwag cccgccaatc taaaaagttt ataacaccca ataaatcaaa      5700
     tacacaaaaa cttctcgccc tgtcaaaaaa agacctgtgt gcatacacag gactaattac      5760
     aggacattgt ttagttaaat atcatttacg actaatcaaa agaattgaag atgatatttg      5820
     tcgcttttgt agtgaggaaa cagaaacctc tgaacacctt ctgtgtaact gcgttgcact      5880
     ttttgctgtg agattaaagt atcttgatca agggtttcta cagccctctg atatatggtc      5940
     cttagctcca ttcaaagtag ttcggtttat acgacatatt attccccatt ttgaaaatac      6000
     cgaaatcatg agttgaggat aactaatcat agtaatctat caccttgaat acggttatac      6060
     attaaaatgg gtggtgtatc acaatagatc aaacaaatgg tcgcagtgat tatacaccca      6120
     acacaggaaa aaaaaa                                                      6136
//
ID   LOA_Ele2    repbase;    DNA;    INV; 4172 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4172
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4172
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1]. The 5' 400 bp shows similarity to those of other
CC   Lian elements, and therefore this family likely encodes only a
CC   single protein.
XX
FH   Key           Location/Qualifiers
FT   CDS           402..4055
FT                 /product="LOA_Ele2_1p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNRIKIIQVNLHHAKGASAVLSRRFTKENINVGLIQE
FT                 PWVNNGRVLGCPSSSCRVLYDETQSKPRTAILVNRDTKFVPITEFIRRDIV
FT                 AIKVEVPTIRGKTEVCIASAYFPGDVEDVPPCSVVHFVNYCKKINAQFIIG
FT                 CDANAHHTIWSSTDINKRGEDLLNYMSSNNIDICNRGDSPTFVNSIRQEVL
FT                 DLTICSDLLSEKIVNWHVSDEESLSDHKQIRFDFKAGSEITESYRNPKKTN
FT                 WDLYRFHLTNKNSYNGEQFTTVSQLENASDGIIDQMVSSYHASCPIQQRSS
FT                 NRDVPWWNDKLAGLRKKSRRLFNRAKITLDWVEYKKALTEYNRELRHAKRK
FT                 DWRRVCETINNAPAAARLHKVLSKDHSNGLGCLKKEDGSYTVDSSETLEVM
FT                 MRTHFPESIPYSDEEQVSDEARHVWSINAYQKACEIFTPSRVEWALSSFQP
FT                 FKSAGKDDIFPALLQQGKETLCPLLTEIFKASVALSYIPKAWQKVRVVFIP
FT                 KAGRKDKTTPKAFRPISLSSVLLKTMEKIIDDFIKSTSLIEMPLCKYQFAY
FT                 QSGKSTITALQSLVNKIEKSLEAKEIAVVAFLDIEGAFDNASYSSMSSAME
FT                 ARGLDKSVIEWVMTMLKGRTISADLGGAQISIRSTKGCPQGGVLSPLLWSL
FT                 VVDELLRNLIDQGFEVIGYADDVAILVRGKFDNTISDRLQTALNITLKWCR
FT                 KEGLNVNPSKTTIVPFTRRKKVKLIQPSLNGVQIQFSEEVKHLGVTLDKKL
FT                 NWNSHLSKVISKGTNALWVCNKALGKTWGLRPNMVNWIYSAIVRPKISYAS
FT                 LVWWPKTNEVTAQKKLAKLQRLACISMTGAMKSTPSVALDALLNILPLHQF
FT                 IKLQAAKNALQFIRYNKILDGDLIGHMKIIKEFNLNSDNKTIEDWMTTKTN
FT                 YDVPFKVVKPSRYTWDSGGPSLRAGSIVFYTDGSKMGDNTGAGVFGPGISK
FT                 VIAMGRSPTVFQAEIQAIIDCTNVCLKRNYRFAKICIFSDSQAALNALKAF
FT                 TCRSKLVWECILSLKQLASRNEVTLYWVPGHCGIEGNEIADNLARQGAASS
FT                 FVGPEPFCGIPECTLRMKLKNWEMSMVESNWNATDTSKQAKRFIKPSLAKA
FT                 RAILNLNKGNLRVITGLMTGHCPSRYHLKNIGKIQSSECRFCQAEDETAEH
FT                 LLCNCGALLNQRTLTFGKGLLEPLEIWQGSPNRVIDFIKRVVPSWDSVTHQ
FT                 PMSITSQL"
XX
SQ   Sequence 4172 BP; 1327 A; 801 C; 933 G; 1111 T; 0 other;
     ggctattcgg cctcaatgga agttgatcct caatatcagc ttctatattc gaatagccta        60
     gatagccgtg tagtgtcggt agccgattgc aacaaggcta gaaataacac tacggattgc       120
     ctgttccggt ggtataagtc catcatacag gtggccccta attcatggtg tcatgcggct       180
     aaaagcatac cgtgcctagg aatgaatggt taggggggtc aaaagaaacc taaccgtgaa       240
     cggtgcctgt ggagtaccag ggcaccctcc acagtattat gcccttactg tgctacccgg       300
     agcaatggcg cagttgacct tgtacttctc cgaaataatc ggctactcat atttagcctc       360
     aaatcagagg cttgatacga gtgggagcat gttaatgtaa tatgaatcga atcaaaatta       420
     tccaggtgaa ccttcatcat gcaaagggcg catcagcagt gctcagcaga aggttcacca       480
     aggaaaatat caatgtggga ctaattcaag agccctgggt aaataatgga agggtacttg       540
     gttgcccttc gagcagttgt agagttttgt acgacgaaac tcagtccaaa ccacggacgg       600
     ctattcttgt aaatagggac acaaaatttg tcccaatcac agaatttatc cgtagagaca       660
     ttgttgcgat caaagtagag gtgccaacta tccgtgggaa aacggaggta tgtattgctt       720
     ctgcttactt tcctggagat gttgaagatg tgcctccatg ctctgtcgtt cattttgtca       780
     actactgtaa gaaaattaat gcccaattta taatagggtg cgatgcaaat gcccatcata       840
     caatttggag cagcaccgat attaataaaa gaggagaaga tcttttaaac tacatgtcgt       900
     ctaacaacat agacatatgt aatagaggtg attctcctac ttttgtaaac tctatccgac       960
     aagaggttct tgatctcacg atctgtagcg acttgttatc ggagaagatt gtgaactggc      1020
     atgtttctga tgaagaatca ttgtcagatc ataaacaaat ccggttcgat tttaaagctg      1080
     gatcagaaat aacagaaagc tatagaaacc cgaagaaaac caattgggat ctctatcgtt      1140
     ttcatttaac gaataagaat tcgtataacg gtgaacagtt cacgactgtt tcacaactgg      1200
     aaaatgcctc tgatgggatc attgaccaaa tggtctcatc ttatcatgct agctgtccta      1260
     ttcaacaaag gtcatctaac agggatgtgc cttggtggaa tgacaagctg gcaggattga      1320
     ggaagaaatc caggcggttg ttcaatagag caaagatcac tttagattgg gttgaataca      1380
     aaaaagccct aacagaatac aacagagaac taaggcacgc caaacgtaag gactggagac      1440
     gggtatgtga aaccatcaac aacgctcctg cagctgcaag gctgcacaaa gtcctttcaa      1500
     aagaccattc aaatggtcta ggttgcctta aaaaagaaga cggcagttat actgttgact      1560
     cttctgaaac actggaagta atgatgagaa ctcatttccc tgaatcgatc ccatattcgg      1620
     atgaagaaca ggtctcagat gaggcaagac atgtatggtc gataaatgcc tatcagaaag      1680
     cttgtgaaat cttcacgcct tcgagggtcg aatgggcatt gagttctttt cagcctttca      1740
     aatctgccgg gaaagatgat attttcccag ccttactgca acaaggaaaa gagacgcttt      1800
     gtccgctctt aaccgaaata ttcaaagcaa gtgttgcgct ttcatatatt ccaaaagcgt      1860
     ggcaaaaggt tcgagttgtc ttcattccaa aagctggaag aaaggataaa acaactccca      1920
     aagcctttag acctataagc ctttcctctg ttcttttaaa gacaatggaa aaaataattg      1980
     atgacttcat caagtcaaca agtttaatag aaatgcctct ttgtaaatac caatttgcgt      2040
     atcaatcagg taaatctacc attacggcgc tgcagtcgct ggtaaataaa atcgagaaat      2100
     ctcttgaagc caaagaaata gccgtggttg cttttctcga tattgaagga gcattcgata      2160
     atgcatccta tagctctatg agttcagcca tggaagcaag gggcttggat aaaagtgtta      2220
     tcgaatgggt tatgaccatg ctcaagggtc gcacaatttc tgctgatcta ggaggtgcgc      2280
     aaatatctat aagatctacg aagggatgtc ctcaaggagg agtgttatcg cccttactgt      2340
     ggtctcttgt agtagacgaa ctccttagaa atttaataga tcaaggtttt gaggtaattg      2400
     gatatgccga cgatgtggcc atcttagttc gtggaaagtt tgataacacg atttccgatc      2460
     ggttgcaaac tgcgttaaac attactctca aatggtgtag gaaagagggg ttaaacgtaa      2520
     acccttcaaa aactactatc gtgcctttta ccagaaggaa aaaggtaaag cttatacagc      2580
     cttctttgaa tggagttcaa attcaatttt cggaagaagt taaacacctt ggtgttactt      2640
     tggataagaa attgaactgg aactctcatc tgagcaaggt cataagtaag ggtactaatg      2700
     ccctatgggt ctgcaataaa gccctaggaa aaacttgggg actgcgacct aatatggtaa      2760
     actggattta ttcagcaata gtccgaccaa aaattagtta tgcttcactg gtatggtggc      2820
     ccaagacaaa tgaggtaacc gctcagaaga agctggctaa gttgcagaga cttgcttgta      2880
     tatcaatgac aggggcaatg aaaagtacac catcggttgc cttggatgcc cttcttaata      2940
     tactgccttt gcatcaattc attaaactgc aagctgcaaa aaatgccttg cagtttattc      3000
     gttataataa aatactagat ggtgatttga ttggtcacat gaaaatcatc aaggaattca      3060
     atttgaattc agataacaaa acaatagaag attggatgac aacgaagacc aactatgatg      3120
     ttccctttaa agtggttaaa ccaagccgct atacttggga ttctggtggg ccaagtttac      3180
     gtgcaggttc tattgtgttt tataccgacg ggtcaaagat gggcgacaat accggagctg      3240
     gagttttcgg ccctggtatc agcaaggtaa tcgctatggg gcgcagtccc actgtgttcc      3300
     aagctgaaat acaagccatc attgactgta caaatgtttg tctcaaaaga aactataggt      3360
     ttgcaaagat ctgtattttc tcagacagtc aagcagcttt gaatgctcta aaggcattca      3420
     catgtagatc aaagttagtg tgggaatgca ttctttcttt gaagcaattg gccagtagga      3480
     acgaagttac attgtactgg gtgcccggcc attgtggaat tgaggggaat gaaatcgccg      3540
     acaatctagc aagacagggt gcagcttcga gctttgtcgg ccctgaaccg ttctgtggta      3600
     ttcctgagtg cactctcagg atgaaactga aaaattggga aatgtccatg gtagaatcca      3660
     attggaacgc cacggataca tccaagcaag cgaaaagatt cataaaaccc agtctagcta      3720
     aagcccgggc tatactgaat cttaataaag gaaatcttag ggtaataact ggcctgatga      3780
     ccggtcactg cccaagtagg tatcatctta aaaatatagg aaaaatacaa tcctctgagt      3840
     gtcgtttttg tcaagctgaa gacgaaactg ctgagcattt actctgcaac tgcggagcat      3900
     tgcttaatca aagaacgtta acatttggaa aagggttatt agagcccttg gaaatttggc      3960
     aaggtagtcc taatagggta atagacttta taaaacgagt tgtgcccagt tgggacagtg      4020
     tgacacatca accaatgtct atcacatctc aattgtgaaa ggatatttga tgagcaccaa      4080
     ataaaatatg ggtcatacca caatattcct aaataatgga agcagtggtt aaaaggctct      4140
     acagatgagg gaaaaaaaaa aaaaaaaaaa aa                                    4172
//
ID   LOA_Ele2B_AAe repbase;    DNA;    INV; 5931 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   LOA_Ele2B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5931
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1421-1421 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >98%
CC   identity. ~86% identical to LOA_Ele2.
XX
FH   Key           Location/Qualifiers
FT   CDS           436..2097
FT                 /product="LOA_Ele2B_AAe_1p"
FT                 /translation="METSEDNFDDGLQSDSLVDVHTPSPSILNSPLKELDD
FT                 SMSDNDEDSVNVTIRPLKPPPLVVPKDDKKISDKGGETNDGDRKVQGKRRG
FT                 LCGSARRRLHKMIKGGMDYAEARERAKAPFVSTPKRQRNDLDRTISSDEKP
FT                 AQKKIRDVRPPQAGNMGKRVDKAQSQEVSSNIASKLNAMTSADRNVGNRVD
FT                 KAQPQEVSNTIASQSDLMVTIDRNVGNRVAKALPQEVRSNIAFQSNETLTA
FT                 DRNVGVNARDSINSGHSRDSKTMRDRVRDALPAPSYGEIASRVRVGIMPKK
FT                 YPAVELSNNQQQVVQEALLLEVIQQRREQFKPKFACCRFRPGFLVLTCQDK
FT                 HTADWVKNKVPSLSLWEEADLVVVDEDKIPRPDELVSFFAFSAKYSNDMIL
FT                 SLIESQNDNLYTDTWRILRRHVKGDHVELVLSVDDSSLRKLGERQFVLNYR
FT                 YGQILMKKKRPVKIVASDQNPKNVPEDTVMDSIQVQQNLAIPGTSGLGRGL
FT                 LKPSPGKTTEQVNSHQTCAGHGGLNIQGQSNAHGNNKTTSDIPSTTKKSTI
FT                 QCRLERE"
FT   CDS           2168..5821
FT                 /product="LOA_Ele2B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNLIKIIQVNLHHAKGASAVLNRRFTKENIGVGLIQE
FT                 PWVNNGRVLGCSSQNSKLLYDDSQSKPRTAILVNRDIKFVPITEFISRDIV
FT                 AIKIEVPTIRGRTEVCIASAYFPGDVEDVPPSLVVDFVNYCRKINAQFIIG
FT                 CDANAHHTIWSSTGINKRGEDLLNYLSSNKIDLCNRGDSPTFINAIRQEVL
FT                 DLTICSDLLSGNIVNWHVSNEESLSDHKHIRFDYKAGSAIEESYRNPKKTN
FT                 WDLYRFHLINKNSYDGEQFTTVSQLDKASDGIIHQMISSYHASCPIQQRSS
FT                 NRDVPWWNDKLAELRKKSRRLFNRAKITSDWVQYKKALTEYNKELRQAKRK
FT                 DWRRVCENINSAPTAARLHKVLSKDHSNGLGSVKKEDGSFTVDSSKTLEVM
FT                 MRAHFPGSIPYSVEEQVLDKVGHIWSTNAYQKACEIFTPSKVEWALSSFQP
FT                 FKSSGKDEIFPALLQQGKEALCPLLTEIFKASVTLSYIPKAWRKVRVVFIP
FT                 KAGKRDKTTPKAFRPISLSSVLLRTMEKIIDDFIKSTSLIEMPLCKYQFAY
FT                 QTGKSTITALQTLVSKIEKSLEAKEIAVVAFLDIEGAFDNASYSSMRSAME
FT                 TRGLDKSIIEWVMAMLRDREISADLGGAQLSIRSKKGCPQGGVLSPLLWSL
FT                 VVDELLKNLKDQGFEVIGYADDVAIVIRGKYDDTISNRLQSALNSTLKWCR
FT                 SEGLNVNPSKTVIVPFTRRKKVNLKQPFLDGIRIQFSEEVKHLGVTLDEKL
FT                 NWNSHLNKIITKGTNALWVCNKALGKTWGLRPNMVHWIYSAIVRPKITYAS
FT                 LVWWPKTNEVTTQKKLAKLQRLACISMTGAMKSTPSVALDALLNLLPLHQF
FT                 VKLQAAKNALQFIRYNKILDGDLMGHLKIIKEFNLNSDIKTVEDWMITKTN
FT                 YDVPFKVVKPNRNTWESGGPSLRPGSVVFYTDGSKMGENTGAGVFGPGISK
FT                 SIAMGCSPTVFQAEIQAILECTNVCLKRNYRFAKICIFSDSQAALNALKAF
FT                 TCQSKLVWECILSLKQLASRNEVTLYWVPGHCGIEGNEIADNLARQGAASS
FT                 FVGPEPFCGVPESTLRMKLRTWEMSMVETNLNATDTAKQAKRFIRPSLSKA
FT                 RAILNLNKKNTRVITGLMTGHCPSRYYLYKIGKIQFSECRFCLNENETAEH
FT                 LLCSCGALFNQRLSIFGKGLLEPSEVWQCNPNRVINFIKRVEPSWDNVLHQ
FT                 PLSTTSQL"
XX
SQ   Sequence 5931 BP; 1896 A; 1150 C; 1352 G; 1533 T; 0 other;
     agtgagtgac tgtcgatcag aaactcgcga ataattttgt gctctcggga ataagtgatt        60
     tactaggtgc tttctaagcc aatcggctgt taaaagtgta gaatagtgtt aatcgtggaa       120
     atactcacta ttattccatg aaattataag cgaattcatc aagaatacgc cgaaatatcc       180
     cgataaagat tttcattcct cgtgggccgt gacggagata tatctttgtg cgataaaaag       240
     cctgatagcc atttgtatgc cgcagtgagc tcccgttgta cggcagtgtg cagatacaca       300
     gttgtgttat cagtgtcttc ggttactaca accagctctt agacgtgtgt gccatacaaa       360
     tcagtctctg ataagttcgg ggggaaattc gagcagttaa cagtgaacgt taaacatatt       420
     tgaacgctgt gcattatgga aaccagtgaa gataattttg atgatgggct tcaaagtgat       480
     tcgcttgttg atgtgcatac cccatctcca tcgattctga attctccgct caaagagcta       540
     gatgatagta tgtccgataa tgatgaggac agtgtgaacg tcaccatacg accattgaaa       600
     ccaccaccac tggtggtacc aaaagatgat aaaaagatca gtgataaggg gggagaaaca       660
     aatgatggag atcgtaaagt gcaagggaaa cgtcgaggtt tgtgtggttc ggcgcgtaga       720
     cggcttcaca agatgataaa aggtggtatg gactatgctg aagcaaggga gcgggctaag       780
     gccccctttg taagtactcc gaaaaggcag aggaatgatc tggaccgcac catcagcagc       840
     gatgaaaagc cggcccaaaa aaagattcgg gacgtcaggc ccccacaagc aggtaacatg       900
     ggcaaaaggg ttgataaagc ccaatcccag gaggtaagtt cgaatatcgc ctccaaattg       960
     aatgcgatga catcggccga tcggaatgtg ggtaacaggg ttgataaagc ccaaccccaa      1020
     gaggtaagta acactattgc ctcccaatcg gatttaatgg taacaatcga ccgaaacgtg      1080
     ggtaacaggg ttgctaaagc tcttccccag gaggtacgtt ctaatattgc cttccaatcg      1140
     aacgaaacat taacagccga tcgcaacgtg ggagtaaatg ctagggattc gataaactct      1200
     ggacactcac gcgattcaaa aacaatgcgc gatagggtac gtgatgctct tccagcgcca      1260
     tcgtatggtg aaattgccag tagggtaagg gtagggatca tgcctaagaa atatcctgct      1320
     gtagagcttt ctaacaacca acaacaagtt gttcaagaag ctcttttgct ggaggttata      1380
     caacaaagac gggaacagtt caaaccaaaa tttgcttgct gtaggttccg gcctgggttt      1440
     ttagtgctca catgccagga taaacacact gcagattggg ttaagaacaa ggtcccgtct      1500
     ttgagccttt gggaagaagc tgacctggtg gttgtggacg aagataaaat ccctcgtccc      1560
     gacgagctag tctctttctt cgcatttagt gcaaagtata gcaatgatat gatactttca      1620
     ctcattgaga gtcagaatga caatctctac actgacacgt ggaggattct taggcgccac      1680
     gtcaaaggtg atcatgtaga gcttgtgcta tctgttgatg actcttcttt gcgtaaactt      1740
     ggtgaaaggc agtttgtact taactacaga tacgggcaga ttctcatgaa aaagaaacgc      1800
     cctgtgaaaa tagttgcttc tgatcaaaac cctaagaatg tcccagaaga tactgtcatg      1860
     gattctattc aagtccaaca aaacttagca attccaggga caagtgggct tggcagaggg      1920
     cttctaaaac cctctccggg aaaaacgact gaacaggtca actctcatca aacatgtgcc      1980
     gggcacggag gtttaaacat ccaagggcaa tcaaatgccc atggtaacaa taaaaccacc      2040
     agtgatatac ccagtacaac taagaagtcg acgattcaat gccgtctgga acgggaatag      2100
     agtgcccctg gaaagaaggt aagtctaagc taataaaatc agtaattaaa aataatgatt      2160
     tacaaacatg aatcttataa aaattattca agtgaacctt caccatgcaa agggtgcgtc      2220
     agcagtgctc aatagaaggt tcacgaaaga aaatattggc gtgggactaa ttcaagagcc      2280
     ctgggtaaat aatggtaggg tacttggctg ctcttcgcaa aatagtaaac ttttgtatga      2340
     cgatagtcag tccaaaccaa ggacagcaat tttagtaaat agggacataa aatttgtccc      2400
     aattacagaa tttatatcaa gagacattgt tgcgattaag attgaggtac caacaattcg      2460
     tggaagaacg gaggtatgta ttgcttctgc ttactttccc ggagacgttg aagacgtgcc      2520
     tccatctttg gtcgttgatt ttgtaaacta ctgtagaaaa ataaacgctc aatttataat      2580
     agggtgcgat gcaaatgccc atcatacaat ttggagcagc acgggtatca ataaaagagg      2640
     agaagatctt ttgaattact tatcgtccaa caaaattgac ctatgtaaca gaggggattc      2700
     tcctactttt ataaatgcta tccgacagga ggtgctggat cttacgatct gtagtgacct      2760
     actgtcgggc aatattgtga attggcatgt ttccaatgaa gaatcattgt cagatcacaa      2820
     acacatccgg tttgattata aagctggatc agcaatagaa gaaagctata gaaaccctaa      2880
     aaaaaccaac tgggacctct atcgttttca tttaataaac aaaaattcat acgatggtga      2940
     acagtttacg actgtttctc aactggataa ggcctcagat gggatcattc accaaatgat      3000
     ctcatcgtac catgctagct gtcctattca acaaaggtcc tctaacaggg atgtgccttg      3060
     gtggaatgac aaattggcag aattgaggaa gaaatccagg cggttattca atagagcaaa      3120
     aattacttct gattgggttc aatacaaaaa agctctaaca gaatataaca aagaattacg      3180
     tcaagccaaa cgtaaggact ggagacgggt atgtgaaaac atcaacagtg cccctactgc      3240
     cgcaaggctt cacaaagtcc tttcgaaaga ccactccaat ggtctaggca gcgtcaaaaa      3300
     ggaggatggc agttttactg ttgattcttc taaaacatta gaagtaatga tgagagctca      3360
     tttcccagga tcgatcccat attcggttga agagcaggtt ctagataagg taggacatat      3420
     atggtctaca aatgcctatc agaaagcttg tgaaatcttc actccatcga aggtcgaatg      3480
     ggcactgagt tcttttcagc ccttcaaatc ttccgggaaa gatgaaattt tcccagctct      3540
     gctacaacaa gggaaggagg cgctttgtcc gctccttact gaaattttta aggccagcgt      3600
     tacactgtct tacattccta aggcgtggcg aaaggttcga gttgttttta ttcctaaagc      3660
     tggcaaaagg gataaaacaa ctcccaaagc ctttagaccc ataagccttt cgtctgtttt      3720
     gctaaggaca atggaaaaaa taattgatga tttcatcaag tcaacaagct taatagaaat      3780
     gcctctttgc aaatatcaat ttgcgtatca aacgggtaaa tctactatta cagcactaca      3840
     gacgctagtg agtaagatcg agaaatcact tgaagccaaa gaaatagccg tggttgcatt      3900
     tctcgacatc gaaggagcat tcgataatgc atcctacagc tccatgagat cagcaatgga      3960
     aacaaggggc ttggataaaa gcattattga atgggtaatg gctatgctca gagatcggga      4020
     gatatccgct gatctgggag gtgcgcaact atctataaga tctaagaagg gatgtcctca      4080
     gggaggagta ttatcgccct tactttggtc gttagtagta gacgaactcc ttaaaaatct      4140
     aaaggatcaa ggttttgagg ttattggata cgcagatgat gtggccattg tgattcgtgg      4200
     aaaatatgat gacacaatct ccaatcggtt gcaatctgcg ttaaacagta ctctcaaatg      4260
     gtgcagaagt gagggcttaa atgtaaaccc ttcgaaaaca gttattgttc cttttacaag      4320
     gaggaaaaag gtgaacctca aacagccttt tttggatgga attcgaattc agttctcgga      4380
     agaagtaaaa caccttggtg taactctgga cgagaaattg aactggaatt ctcatctaaa      4440
     taagatcata actaagggta caaatgccct gtgggtctgc aataaagcct tggggaaaac      4500
     ctggggccta cgcccaaaca tggtacattg gatttattca gcaatagtgc gacctaaaat      4560
     tacttacgct tcactggtgt ggtggcctaa aacaaatgag gtaaccactc aaaagaagtt      4620
     agctaagtta caaaggcttg cgtgtatatc tatgactggg gcaatgaaaa gcacaccatc      4680
     agttgctttg gatgcccttc tcaatttact acctttgcat caatttgtta aactgcaagc      4740
     tgcaaaaaat gccttgcaat ttatccgtta caataaaata ctagatggtg atctgatggg      4800
     acacttgaag atcatcaagg aattcaactt gaactcagat ataaaaacag tagaagactg      4860
     gatgataacg aagacaaact atgatgtgcc cttcaaagtg gttaaaccaa accgcaatac      4920
     gtgggaatct ggtgggccaa gtttacgtcc agggtctgtt gtattttaca ccgatgggtc      4980
     aaagatgggc gaaaataccg gggctggagt ttttggtccc ggtattagta agtctatagc      5040
     tatgggatgc agccccactg tatttcaggc tgaaattcaa gcaattttag aatgcacaaa      5100
     tgtttgtctc aaaaggaatt acaggtttgc taagatctgt attttctcgg acagtcaagc      5160
     agcattaaat gcgctaaagg catttacatg tcaatcgaag ttagtgtggg aatgtattct      5220
     ctctttgaag caattggcca gtaggaacga agtaacgttg tactgggttc ccggccattg      5280
     tggtattgaa gggaatgaaa tcgccgacaa tctagcaaga cagggtgcag cttcgagctt      5340
     cgtcggccct gaaccttttt gtggagttcc tgagagtact cttaggatga aactaagaac      5400
     ttgggaaatg tccatggtag aaactaattt gaatgccacg gatacagcca agcaagcgaa      5460
     aagatttatt agacccagtc tgtcaaaagc ccgggccata ttaaatctta ataaaaagaa      5520
     taccagggta ataaccggtc tgatgactgg tcactgcccg agcaggtatt acctttacaa      5580
     gattggaaaa atccaattct cagaatgtcg attttgtttg aacgaaaacg aaaccgctga      5640
     acacttgctt tgcagctgtg gagcattgtt caatcaaagg ttgtcaatat ttggaaaagg      5700
     gttattggag ccctccgaag tttggcaatg caatccaaac agggtaataa actttataaa      5760
     acgagttgag cctagttggg ataacgtgct ccatcaacca ttgtccacca catctcaatt      5820
     gtgagaggat atttgatgag cacaaaatta aatatgggtc ataccacaat attcctaatt      5880
     attggacgca gtgggtaaaa ggctctacag acaaggaaaa aaaaaaaaaa a               5931
//
ID   LOA_Ele3    repbase;    DNA;    INV; 5746 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5746
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5746
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           344..1918
FT                 /product="LOA_Ele3_1p"
FT                 /translation="MSANNQTKIKGVDCLPQFEKGDDCLSQSDETETENAF
FT                 GKLGLTEDELLSSSHENMETDLPLTLPNDPGLHPSVEPMDDEEDGITVTIN
FT                 LSGSQPSITGSNVTSGPIDGKTDQHPTDDANKQKPTGTKKITRSQRKQLKA
FT                 LRQSGLSRPEALSRITGGEAMVSTPSKRTRQDLDKSTNAEEEHKQKRMKQH
FT                 LNPRKRVGQQETNSSTASTINKPPPEDKKQTSLSYGEITSRRRVGIIPKDF
FT                 PTTQLSTTQLDVLQEALLLRVEQQRNATMKPKFSNLIYKSGHMVLICKDQE
FT                 TAEWVKEITPALNPLEGVELVAMDEDKIQRPELIRAFFPQSAQYTDDRIKA
FT                 LIESQNDLITNNWRVMQRLTPNNKHVVWVFNVDGPSMEKLIQSKFILNFRF
FT                 GEIQLRKVKSTTPNSNDNPTGQPTQEKSEEASSSIPQPTPTIQASLSSSDG
FT                 KDAYLTSLPGPSGVTSMAPNKGSGNVKSVKLTTGDKPAGLGKGKDKNQNLR
FT                 HPPKSKVDDPQHPKKDGKRPENAERLSND"
FT   CDS           1854..5573
FT                 /product="LOA_Ele3_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MIRNIQRRTANVRKMRNASAMIKILQVNLHHAQCATD
FT                 VLCRRFTKEHLSVALIQEPWVNKTRIQGIQLNSCRLVYDDSQLSPRAAILI
FT                 RNDTKCFPITEFIKRDIVAVRMEVSTARGSTEIIMVSAYFPGDAEDIPPPE
FT                 MAALVSYSQKHNIPFVIGCDANAHHLVWGSTNTNIRGEHLLQFLSSKNIDI
FT                 CNVGDKPTFENILRQEVLDLTLCSQSISDKIKNWHVSNEISMSDHKHIVFE
FT                 WEGGLMIQKSFKDPKKTDWETYSAILRSEDYIIEPNIQTIIQLEAASDSIK
FT                 NKILNAYQESCPIKTVSSNRDVPWWNFNLDKLRKTARKEFNRAKRTSDWSL
FT                 YRKALTEYNKEMRRAKRKSWVLMCESIEKTPVAARLHKTLSKDHSNGLGSL
FT                 QRTDGSLTVEPRETLSEMLRVHFPDSIPQTSLNAEGARLDVSVPHGFLSGD
FT                 SGAKRDAIKVAKEAFTRDRVVRAVRSFEPFKSAGMDGIFPALIQKEEETLI
FT                 PHMVEIFKASLVLGHIPNDWRQVRVVFIPKAGKKDKTNPKAFRPISLSSVM
FT                 LKIMEKVLCEYIDSKFMKTMPLSKSQFAYQSGKSTVSALHTLVNKIEKTFN
FT                 AKEIALIAFLDIEGAFDNASYSSIGSAMLRRNFDPCIATWVHAMLANRQIS
FT                 SELSDSRITVMATRGCPQGGVLSPLLWSLVVDELLDSLERRGFEVVGYADD
FT                 VVIIVRGKFDSVISSRMQIALNHTLSWCQKEKLGINPSKTTIVPFTKRRKV
FT                 QLHPLFLNQIQLVYSNEVKYLGITLDAKLNWNTHLQTIINKGLNSLWVCSK
FT                 TCGKTWGLKPSMIMWIYKTIVRPRITYASLVWWPKTKEATARAKLNKIQRT
FT                 ACIAITGAVRSTPSFALDAILNLPRLDQFIKLDAEKSALRLKRSTVLLSGD
FT                 LTGHLSILNEFSINPIVEKCSDWMEKVVNYDSPFTVVFPSREEWEGGGPTI
FT                 SPGSIKFYTDGSKMNNLTGSGVYGPKTKISVSLGQWPTVFQAEVYAIKECA
FT                 QLCLKRNYRHATICIFSDSQAALQSLKAFTCNSKLVWECILALKSLAERNR
FT                 VKLYWIPGHTGLEGNEIADQLARNGSTNMFIGPEPFLGISNSALNTELNNW
FT                 LFGQIQSNWNTVSNANQSKRFVTINTTQTQKLIGLNKRDLRTYIGLITGHC
FT                 PSRYHLYKIGVVQNTNCRFCDETDETSQHLLCSCSAHIHRRFKIFGKHYLQ
FT                 PADIWNASPREVVSFIRLITPDWGNYNTAT"
XX
SQ   Sequence 5746 BP; 1833 A; 1308 C; 1239 G; 1366 T; 0 other;
     ggctgcttgg tcgttcatag aagttaatat tcaatgttat cttcttttcc aagcagccta        60
     gatagccgtg tagtgtcggt agtggttgtc tcaactggct aagaataaca ctacggattg       120
     cctgatcctg tagtaaaaat ctactaatca ggtaacccca atcccaaggt gtgatgcgac       180
     ccgtgctgat ggatgaatgg ttgagggggt ttaaaatatg ctcaatcgct aacggagcct       240
     ggagagcacc agggcgaact ctccagtatg tagctcttac tgcattaggg cggggcaatg       300
     atgcagcgga ccgtctttcc ccagcgactc gtgggaccaa aaaatgagtg caaataatca       360
     aaccaaaata aaaggtgtcg actgcctccc tcagttcgaa aaaggtgacg actgcctctc       420
     ccagtcggac gaaacggaaa cagagaatgc ttttggtaag cttggactga ccgaagatga       480
     gcttctcagt agttcgcatg aaaacatgga aaccgacctc cctctgacac tcccgaacga       540
     cccaggactc catccttcgg ttgaaccaat ggacgacgaa gaggatggaa ttacagtcac       600
     aataaacttg tcaggatcgc agccatcaat cacaggatcg aacgtcacct cgggtcctat       660
     tgatgggaag accgatcaac atccaacaga tgacgcgaac aaacaaaaac ctactggcac       720
     caaaaagatc actcggagcc aaaggaagca gctaaaagca ctccgacaaa gtggcttaag       780
     ccgccctgag gccctatcca gaatcacggg gggtgaggct atggtgtcaa ctccttcgaa       840
     acgcactcgg caggaccttg acaagtctac aaatgctgaa gaagaacata agcagaaacg       900
     gatgaaacaa cacctgaatc cgagaaagcg cgttgggcaa caggaaacca acagctcaac       960
     agcctcgacg atcaacaaac ccccaccaga agataaaaaa cagactagtc taagctacgg      1020
     tgaaattacc agtcgcagga gagtcggaat aatcccaaaa gacttcccca cgacccaact      1080
     ttcaacgact cagctggacg ttctccagga ggcactgctg cttcgggttg aacaacaacg      1140
     gaacgcgaca atgaagccca agttctctaa ccttatctac aagtctggcc atatggttct      1200
     tatttgtaag gatcaggaga ctgcggaatg ggtaaaggag ataacacctg cattaaatcc      1260
     cctggaaggc gttgagttgg ttgcaatgga tgaggataag attcaacgtc cagaactgat      1320
     tcgagccttc ttccctcaaa gcgcacaata caccgatgat cgtatcaaag ctctcatcga      1380
     gagtcagaac gatctgataa ccaacaactg gcgtgtcatg caacggctca ctcctaacaa      1440
     caagcatgtg gtgtgggtct ttaatgtaga tggaccgtcc atggaaaaac tcattcaatc      1500
     caagttcatc ctcaacttcc gctttggaga aatacagttg aggaaagtaa agagcacaac      1560
     cccaaactcc aatgacaatc caactggaca gccgacccaa gagaaatctg aggaggcctc      1620
     tagtagcatc ccacaaccaa ctcccaccat acaggctagc ttgtcttcct ctgatggaaa      1680
     agatgcatat ttgacctcac ttcctggccc aagcggtgtc acctcaatgg ctcccaataa      1740
     gggcagtgga aatgtcaaaa gtgtaaaatt gaccacaggg gataagccag caggcctagg      1800
     taagggaaag gacaaaaacc aaaatctaag acatccccca aaatcaaaag ttgatgatcc      1860
     gcaacatcca aagaaggacg gcaaacgtcc ggaaaatgcg gaacgcctca gcaatgatta      1920
     aaatcctcca agtgaatctc catcatgctc agtgcgcaac agatgtgctt tgcaggagat      1980
     tcacaaaaga acacctttcc gtggcactga ttcaagagcc atgggtcaac aaaactcgaa      2040
     tacaaggtat tcaactaaac tcgtgtaggt tggtatatga tgacagccag ctctctccca      2100
     gagcagctat tctaatacgc aatgatacta aatgttttcc aattacagaa ttcatcaaaa      2160
     gggacatcgt ggcggtcagg atggaggttt ctactgctag gggcagtact gagatcatta      2220
     tggtttcggc gtatttccct ggcgacgcag aagacattcc tcctccagag atggctgctc      2280
     ttgtctctta cagtcaaaaa cacaacatcc ccttcgtcat cggttgtgac gccaatgctc      2340
     atcaccttgt atggggaagt acaaacacaa atatcagagg tgagcatctt ttgcagtttc      2400
     tttcctccaa aaatattgac atatgcaatg tcggtgataa gcctacattt gaaaacatct      2460
     tacgacaaga agtccttgat ctgactttat gcagtcaatc catctcggat aaaataaaaa      2520
     actggcatgt ttctaatgaa atatctatgt cagaccataa acatatagtc ttcgagtggg      2580
     aagggggtct aatgattcaa aagtcgttta aagatcccaa gaaaactgat tgggaaacct      2640
     actcagctat tctccgttct gaagactata taatagagcc gaatattcag actattatac      2700
     agttagaagc agcttcggat tctattaaaa acaaaattct aaatgcttat caagagagct      2760
     gtccgatcaa aacagttagt tcgaacagag atgttccatg gtggaacttc aaccttgata      2820
     aactcaggaa aactgctcgg aaggaattca accgagccaa acgcacttct gattggagtc      2880
     tataccgaaa ggctctgaca gagtataaca aagaaatgag acgagcaaaa cggaaatcat      2940
     gggttctcat gtgtgaaagc attgagaaaa ctcccgtagc tgctcgactt cataaaactc      3000
     tttcgaagga tcactccaat ggtttgggaa gtcttcaaag gactgacggt tcactcactg      3060
     tggaacctcg tgaaacactg agtgaaatgc taagagttca ctttcctgat tcaatcccac      3120
     aaacgagtct aaatgctgaa ggtgccagac ttgacgtctc agttccacac gggttcctat      3180
     caggggactc aggagcaaaa agggacgcaa taaaggttgc caaagaagct tttactcgcg      3240
     atagggttgt tagggcagtg agatctttcg agccattcaa atctgctggc atggatggaa      3300
     tcttcccagc gcttatccaa aaagaggaag agacactgat tccacacatg gtagagattt      3360
     ttaaggcaag tttagttctg ggacacattc caaatgattg gcgtcaagtt cgagttgtct      3420
     ttattccaaa agcaggaaaa aaggacaaaa ccaaccctaa agcattccga ccgataagcc      3480
     tatcctcggt aatgcttaaa atcatggaga aggtattatg cgagtatata gattctaaat      3540
     ttatgaaaac tatgcctctt tctaaatccc aatttgctta tcaaagcgga aaatcaacgg      3600
     tctcagcact gcacacgcta gtgaacaaga tcgagaaaac ctttaatgca aaagaaatcg      3660
     ctcttatagc atttcttgat attgagggcg cgttcgataa cgcttcttat tcgtctatag      3720
     gttcggcaat gttgaggaga aacttcgacc catgcattgc aacctgggta catgctatgc      3780
     tagcaaatcg acagatctca tctgagctga gtgattcgcg cattactgta atggctacaa      3840
     ggggatgccc tcaaggggga gtactatctc ccttattgtg gtcattagtg gtggacgaac      3900
     tgctagatag cttagaaaga aggggttttg aagttgttgg atacgcagat gacgtagtca      3960
     ttattgtacg aggcaaattt gacagcgtta tttcatcaag gatgcaaatt gctctcaatc      4020
     acacactctc ctggtgtcaa aaagagaaac taggaataaa cccttcaaaa acaacaattg      4080
     taccgttcac aaaaagacga aaggtacaac tccaccctct tttcttgaac caaatacaat      4140
     tagtttactc aaatgaggtc aagtatcttg gcatcacact tgacgcaaaa ctaaattgga      4200
     acacccatct tcaaacaatc ataaataaag gtctcaattc actctgggtt tgctcaaaga      4260
     cctgtggtaa aacatggggt ctaaaaccca gtatgatcat gtggatctat aaaacaatcg      4320
     ttcggcctag aataacctat gcgtcccttg tttggtggcc taagacaaag gaagctacgg      4380
     ctagagctaa gctgaacaaa attcaacgta ctgcctgtat tgccataacc ggtgcagttc      4440
     gtagtacccc ctcgtttgcc ctagatgcta tactcaatct gccccggctg gatcaattca      4500
     taaagctgga tgctgagaaa agtgctcttc ggctaaaacg atcaacagtc ctactgtcag      4560
     gggacttaac aggtcacctc agtatattaa acgaattttc gataaatcct attgttgaaa      4620
     aatgtagtga ctggatggaa aaagtggtaa actatgactc gccattcacg gtggtctttc      4680
     cttctcgtga ggaatgggaa ggaggtggac ccaccatttc accgggatct attaaattct      4740
     acacagatgg ttcaaaaatg aataatttga cagggtctgg agtatacgga ccgaaaacca      4800
     aaatctctgt ctctcttgga cagtggccta cagtatttca agcagaagtc tatgcaatca      4860
     aggaatgtgc gcagctgtgt ctgaaaagaa attacagaca tgccaccatc tgtattttct      4920
     ctgatagtca agcagcgctt caatctttga aggctttcac ttgcaactca aaacttgtgt      4980
     gggaatgcat tcttgcactg aaatccctag ctgaacgcaa tcgagttaaa ctatattgga      5040
     tcccaggaca tacgggtcta gagggtaacg aaattgccga tcagctagca aggaatggat      5100
     caaccaatat gttcattggt ccagagccat tccttggcat ttcaaactct gcactaaaca      5160
     cggaattgaa caactggttg ttcggtcaaa ttcaatcaaa ttggaataca gtttccaatg      5220
     cgaatcagtc caaaaggttc gtaacaataa acacgacaca aacacaaaaa cttataggtc      5280
     tcaacaaaag ggatctcaga acatacatcg gtctaataac tggtcactgc ccaagcagat      5340
     accacttata caagatcggt gtcgtccaaa acacaaattg ccgtttctgt gacgagacgg      5400
     acgaaacctc acaacacctt ctctgctctt gcagtgcaca catccatcgt aggttcaaaa      5460
     tatttggcaa gcactactta cagccagctg atatttggaa cgcatccccc agggaggtgg      5520
     ttagctttat taggctgatc acgccagatt gggggaacta caacactgca acctaggact      5580
     tctgcccatc aatggcagat ggttcaaagt tcagtcaaat gcgcaaagta ttccggaggc      5640
     acatttgcta ctggaaaaca ttgtgtacat agagtaatag ggtatatcac aatagtccta      5700
     aaaaatggac gcagtgatcc cacacccgac agaagaagaa gaagaa                     5746
//
ID   LOA_Ele3B_AAe repbase;    DNA;    INV; 5698 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   LOA_Ele3B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5698
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1422-1422 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. The consensus is ~80% identical to LOA_Ele3 and ~76%
CC   to LOA_Ele3C_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           305..1876
FT                 /product="LOA_Ele3B_AAe_1p"
FT                 /translation="MMQRTVIPQRLVGTNMSTNQNNNNLEGVDCLSQSEPM
FT                 VVEDVQSNTELTEEQLLASSQEDMLTDATEVSNKNSTNHPYPDTQLDMDDD
FT                 NNDGINVIINIPESQPSGSESKTDPSCHPNNANDQQTTKINLTRGQRKKFK
FT                 ALMQSGVSRSEALIQLGKGKDELASSKRGRTDLDNSATSEDVPKQKRTKKR
FT                 LDPRDRAEQSNHDGPMAQQSSDGHQNSGENQTAGHSYSDMTNRRKVGVVPK
FT                 HFPTSHLSTTQLDALQEALLLKVEKQRNEPMKPKFCNLLYKSGYMVLVCKD
FT                 LETADWVKEITPSLIPWEGAELEAMDEEKIQRPEPIRAFFPQSAKYCDERI
FT                 KTLIESQNKITTSSWRILQRSTPNDIHVEWIFTVDGPSMANLTKSNFILNY
FT                 RFGEIQLRKIKGKTTQSNENSTNRVPQEKSKAASSKNPQSNPIKKASLPVS
FT                 KDSSSNQTPSSSGGRLVPSKSSGSGKRLNSTTETKKAGLGKKIDKHEHPKH
FT                 HPKQIQDDPQHPKKNDLRPGNCGTPKND"
FT   CDS           1812..5531
FT                 /product="LOA_Ele3B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MIRSIQRRTTSVLETAAHLKMTKIIQVNLHHARSATD
FT                 VLCRRFTKELFTVALIQEPWVNQSRIQGIHVNSCKLVYDDSQLSPRAAILI
FT                 RNDTKCFPITEFIKRDIVAVRVEVPTARGKADIVMVSAYFPGDAEDVPPPE
FT                 IAALTSYCETKNIPLVIGCDANAHHTVWGSTNINPRGEYLLQFLSSNNIDI
FT                 CNTGDKPTYENAIRQEVLDLTLCSQSISHKITNWHVSDEISMSDHKHIVFE
FT                 WEGGLTIAKSFKDPKKTDWETYSATLRSEDYIINPNIKTVLELEMASDSIQ
FT                 TKILNAYQESCPTKTVKSSRDVPWWNNHLEKLRKTARREFNRAKRSTDWSL
FT                 YRKALTDYNKEIRLAKRKSWVLMCESIEKTPVAARLHKTLSKDHSNGLGTL
FT                 RKTDGSLTVDPTETLSEMLRTHFPDSIPEAIVNANGNRHGVSGQQELLSWD
FT                 SSTKRDALKVAKEAFTRARVERAVRSFEPFKSAGMDGIFPALIQKEEQTLI
FT                 PPMIEIFKASLVLGHIPDGWRQVRVVFIPKPGKKDKTNPKAYRPISLSSVM
FT                 LKIMEKVLGEFINSKFMEAMPLSKYQFAYQSGKSTISALHMLVNKIEKTFH
FT                 AKEIAIVAFLDIEGAFDNASYLSIVSAMHRRKFDPCIATWVHAMLANRRIS
FT                 SELSGSCATVMATKGCPQGGVLSPLLWSLVVDDLLNSLEKRGFEVVGYADD
FT                 VVIIVRGKFESVVLARMQSALDYTLSWCLKEKLGINPSKTTIVPFTKRRKV
FT                 QLQPLFLNQTQLVYSNEVKYLGITLDAKLNWNTHLQNMVNKGLNSLWVCSK
FT                 TCGKKWGLKPNMIMWIYKTIVRPRIAYASLVWWPKTSEVTARAKLNKIQRA
FT                 ACVAITGAVRSTPSFALDAMLNLPRLDQFIKLDAEKSALRLKRSINLLPGD
FT                 LTGHLSILNEFSINPIVEKCSDWMEMVVNYDISYTVFIPSRQEWQEGGPSI
FT                 PPGSIKFYTDGSRMNNRSGSGVHGPRTKISVPLGQWPTVFQAEVYAIIECV
FT                 QLSIKRNYRNATICIFSDSQAALHALKAYTFNSKLVWECALALKTLAIRNR
FT                 VKLYWIPGHTGLEGNEIADELARNGSANTFIGPEPFFGISNCSLNIELNSW
FT                 LSRQIISNWKTVSNANQSKRFVTINSKQTQKLIGLNKRDLSTYTGLITGHC
FT                 PSRYHLQKIGAIQNPNCRFCSETCETSQHLLCSCSAHIQRRSKIFGKPFLE
FT                 PADIWNASPREVVGFIRLIVPDWGIHNAAT"
XX
SQ   Sequence 5698 BP; 1792 A; 1335 C; 1255 G; 1316 T; 0 other;
     cctggtggct gtcttggcca aataagttgt tgaacatcaa tttcagcaac ttttccaagc        60
     agcctagaga gccgtgtagt tatcggtagc ggttgactca actggctaag aataatacta       120
     cggatcgcct gatccggtgg tagaaatcca ccagtcaggt aaccccaatt ccaaggtgtc       180
     atgcgacccg tgctgatgga tgaatggttg agggggttta aaagatgctc aatcgcgaac       240
     ggagcctggt gtgtaccagg gcgaactccc cagtatgtag ctcttactgc attacggcgg       300
     ggcaatgatg cagcggaccg ttattcccca gcgactcgtg ggaacaaata tgagtacaaa       360
     tcaaaacaac aacaatcttg aaggtgtcga ctgcctctct cagtcggagc caatggtagt       420
     ggaggacgtg cagagcaata ctgagctaac cgaagagcag ttactcgcaa gttcgcagga       480
     ggatatgctt accgacgcaa ccgaagtaag caacaaaaat tcaacaaacc atccgtatcc       540
     ggacacccaa ctggacatgg acgacgataa taacgatggt ataaatgtta tcatcaacat       600
     cccagaatct caaccatcag gatctgaatc caaaacggat ccttcatgtc atccgaacaa       660
     cgcgaatgac caacagacga caaaaataaa cctcacgaga ggacaaagga agaagtttaa       720
     agcactgatg cagagcggcg tgagtcgatc tgaagccctc attcaactcg ggaagggcaa       780
     agatgagcta gcttcctcta aacgtggcag gacggaccta gacaactcgg ctaccagtga       840
     ggacgtcccc aagcagaaac gaaccaagaa acgcctggat cccagagatc gagctgagca       900
     atccaaccac gatggcccaa tggctcagca gtcaagtgac ggtcaccaaa atagcggaga       960
     aaaccaaacg gctggtcata gctacagtga catgaccaat cgtaggaagg tcggagttgt      1020
     tccgaaacac tttcccacat cccatctttc cacgactcag cttgatgctc ttcaggaggc      1080
     cctgctgcta aaagtggaga aacagcgtaa tgagccgatg aaaccaaaat tctgcaacct      1140
     gctctacaag tctggataca tggtccttgt ctgcaaggat ctcgagactg cagactgggt      1200
     aaaagaaata actccttcac tcatcccttg ggaaggtgcc gagttggaag caatggacga      1260
     ggagaaaatt cagcgtccag aaccaattcg tgcgttcttt ccccaaagtg cgaaatactg      1320
     tgatgagcgc ataaaaacgc tcatcgagag tcaaaacaag atcacaacct ctagttggcg      1380
     tattctccaa agaagcacac caaacgatat ccatgtcgag tggatattta cggttgatgg      1440
     gccgtctatg gcgaacctaa caaaatccaa ctttatcctc aactatcgct ttggcgaaat      1500
     acagctgaga aaaataaagg gcaaaaccac tcagtcgaac gaaaattcaa ctaatagggt      1560
     gccccaagag aaatctaagg cagcctctag caaaaaccca caatcaaacc ccattaaaaa      1620
     ggccagtctg cctgtctcta aagattcaag ctccaaccaa actcctagct ctagcggtgg      1680
     cagattggtg ccatctaaga gcagtggatc tggtaaaaga ttgaattcga ctacagagac      1740
     aaaaaaggct ggcctaggga agaagattga caaacacgaa cacccgaaac atcatccaaa      1800
     acaaatacaa gatgatccgc agcatccaaa gaagaacgac ctccgtcctg gaaactgcgg      1860
     cacacctaaa aatgactaag atcattcaag tgaatctcca tcatgctcga agcgcaacgg      1920
     atgtgctttg ccggagattc acaaaagaac tgttcactgt ggctcttatc caggagccat      1980
     gggtcaacca atctcgaata cagggtattc atgtaaactc atgcaagttg gtatatgatg      2040
     acagccagct ctctccaaga gcagctattc taatacgcaa tgacactaaa tgctttccaa      2100
     ttacagaatt cattaaacgc gacatcgtag cagtcagggt ggaggttcct accgctagag      2160
     ggaaggctga tatcgtcatg gtctcggcgt attttccagg cgacgcggaa gatgttcctc      2220
     ctccagagat tgctgcgcta acctcttact gtgaaacaaa aaacattccc cttgtcatcg      2280
     gatgtgacgc gaatgcgcat cacactgtat ggggaagtac aaatataaat cctcgaggtg      2340
     agtacctttt acagtttcta tcctcaaaca acatagacat atgtaacaca ggtgacaagc      2400
     ctacatatga aaacgccata cgacaggaag tgctggatct gactttatgt agtcagtcca      2460
     tctcccacaa aataacaaac tggcatgttt ctgatgaaat atctatgtca gaccacaaac      2520
     acatagtctt tgaatgggaa gggggtctaa ctattgcaaa atcgtttaaa gatcctaaga      2580
     agactgattg ggaaacctat tcagccactc tccgatccga agactacatc ataaatccta      2640
     atatcaaaac agttctagag ttagaaatgg cttctgactc tatacaaact aaaattctta      2700
     atgcatatca agaaagctgt ccgactaaaa ctgttaagtc gagcagagat gttccgtggt      2760
     ggaacaacca tcttgaaaag cttaggaaaa cggcacggag ggagttcaac cgtgccaaac      2820
     gctctactga ttggagccta taccgaaagg ctctgacaga ctacaacaag gaaataaggc      2880
     tagctaagcg gaaatcatgg gtcctcatgt gtgaaagcat tgagaagact cccgtagctg      2940
     ccagacttca taaaactcta tcgaaagacc actccaatgg tctgggaact ctccgaaaga      3000
     ctgacggttc gctcactgtg gatcccacag aaacactgag tgaaatgctg aggactcact      3060
     tccctgattc aatccctgaa gcgatcgtga acgctaatgg caacagacat ggcgtctctg      3120
     gtcaacaaga gctcctgtca tgggactcaa gtaccaaaag agacgcattg aaggttgcca      3180
     aagaagcctt tacgcgagca agggtggaaa gggcagtgag atcctttgag ccatttaaat      3240
     ctgctggcat ggatggaatt ttcccagcgc ttatccagaa agaggagcaa acgcttattc      3300
     ctcccatgat agagattttt aaggccagtt tagtcttagg acatattcca gatggctggc      3360
     gtcaagttcg agttgtcttt atcccgaagc cgggaaaaaa agacaaaacc aatcccaaag      3420
     catacagacc gataagtctg tcgtcagtga tgcttaaaat aatggaaaag gtcttaggag      3480
     agttcataaa ttcaaaattt atggaagcaa tgcctctttc caaataccaa ttcgcttacc      3540
     aaagtggaaa atctacgatc tcagcactac acatgctagt caacaagatc gagaaaacat      3600
     ttcatgcaaa ggaaatcgcc atcgtggcat ttcttgacat tgagggtgca ttcgataacg      3660
     cttcctattt gtctatagtg tcagcaatgc ataggagaaa atttgaccca tgcattgcta      3720
     cctgggtaca tgctatgcta gcaaatcgcc gaatctcatc cgagttgagc ggatcgtgcg      3780
     ccactgtcat ggccacaaag gggtgtcctc aaggaggggt actttcacct ttgctatggt      3840
     ctctagtggt ggatgatcta cttaatagcc tggaaaaaag aggattcgag gttgttggct      3900
     acgctgatga tgttgtcatc attgtacgcg gcaaatttga aagcgttgtc cttgcaagaa      3960
     tgcaatcagc tctcgattac acgctctcct ggtgtctgaa agagaaactg gggataaatc      4020
     cttcaaaaac tacgattgtt cctttcacaa agcgcagaaa ggtacagctg caacctcttt      4080
     tccttaatca aacacaattg gtttactcaa atgaagtcaa ataccttggc attacgcttg      4140
     atgctaaact caattggaac acacatcttc aaaacatggt aaataaaggt ctcaattctc      4200
     tgtgggtctg ctcaaagacc tgtggaaaaa agtggggcct aaaacctaat atgatcatgt      4260
     ggatatataa aaccatcgtt cggcctagaa tagcctacgc ttcccttgtt tggtggccaa      4320
     aaacaagcga ggttacggct agagccaagc tgaacaaaat ccaacgcgcc gcgtgcgtcg      4380
     ccattactgg tgcagttcgc agcacccctt cattcgccct agatgcaatg cttaatctgc      4440
     cccggctaga tcaattcata aagctggatg ctgagaaaag cgctctgagg ctaaaacgat      4500
     caataaacct tctgccaggt gatttaaccg gtcacctaag catactaaac gaattttcta      4560
     taaatccaat tgtagaaaaa tgcagtgact ggatggaaat ggttgtgaat tatgacatat      4620
     catatacggt gttcattcct tctcgccaag agtggcaaga aggtggaccg agtattcctc      4680
     caggctcaat caaattctac actgatggat cgagaatgaa caatcgttct ggatctggag      4740
     tgcacggacc aagaaccaaa atctctgtcc ctctcggaca gtggcctaca gtttttcagg      4800
     ctgaagtgta tgctatcatt gaatgtgtgc agctcagcat aaagaggaat tacagaaatg      4860
     ccacaatctg tattttctcc gacagccaag cagctcttca tgctctgaaa gcttacactt      4920
     ttaactcaaa attagtgtgg gaatgtgctc ttgctctaaa aaccctagcc atccgcaatc      4980
     gagttaaact atattggatc cccgggcata cgggtctaga gggtaatgaa attgccgatg      5040
     agctagccag gaatggatcg gccaatacat tcattggtcc tgagccattc tttggcatat      5100
     caaactgctc actaaatatt gaactgaaca gctggttgtc caggcaaatt atatccaatt      5160
     ggaaaacagt ttccaatgcg aatcaatcta aaagattcgt cacaattaat tcgaaacaaa      5220
     cacaaaaact cattggtctc aacaaaaggg acctcagcac ctacaccggt cttataactg      5280
     gacactgccc cagcagatac catttacaaa agatcggagc catccaaaac ccaaattgcc      5340
     gtttctgtag tgaaacgtgc gaaacctcac aacaccttct ctgctcctgc agtgcacata      5400
     tacaacgaag atccaaaata tttggcaagc cctttttgga gccggccgat atttggaacg      5460
     catctcccag ggaagtggtc ggctttatca ggctgatcgt accagattgg gggattcaca      5520
     atgctgcaac ttaggacttc tgcccatcaa tggcagatgg ctaaaagttc agtcaccgcg      5580
     caaagtattc cggtggcgtt cccgccactg agggtctttg taaaagcaaa agggtatatc      5640
     acaatagttc taaaaaaaat ggacgcagtg atctcacacc cgacagaagg aggaggaa        5698
//
ID   LOA_Ele3C_AAe repbase;    DNA;    INV; 5807 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   LOA_Ele3C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5807
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1423-1423 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. The consensus is ~77% identical to LOA_Ele3 and ~76%
CC   to LOA_Ele3B_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..1975
FT                 /product="LOA_Ele3C_AAe_1p"
FT                 /translation="MQLLLHYGRVMMQLTFISLATRGTNKMNTSVSKPNKG
FT                 DDCLTQSEKMEVENSLSQLGLTEDQLLCSSQEEMESTPSQKPNAPGKSSAG
FT                 HSEDPGIPSSIESVNTDDDKDDGIKVVINTPKPVPSKKGPKMDDPMDGEEA
FT                 EGNVTPRKNLTRSQRKQLKALRESGLSRNEALSKILANEGTVLASSKRTRN
FT                 DLDKSATVEEDSKPKKMKHQLDPRERAEKSSSSVPQNGGSKRQATGQSYSD
FT                 MTKRVKVGIIPKDFPTAQLTTAQLDVLQDALLLKVEQQRDEPLKPKFCNLV
FT                 YKSGYMVLICKDQETAEWVKEITPSVNTWEGAELVALNEEDIPRQELLRAF
FT                 FPQSSTFADERIKALIESQNGLKTTNWRIVKRSILNDIHVEWIFTVDGSSM
FT                 DMLSKSKFILNYRFGEIQLRKIKRTPSVSNHKPNKELAQENSEEAPDSNSG
FT                 KRNAISRPKTTMKASVSAPKGKVPSSASIPCSSGTNPKVSKTSSGKEMSEV
FT                 LTTGAKLAGLDVMGGKNKVLKPNPKQNRDDPQHPKKGDARLDKSGTPKYGA
FT                 "
FT   CDS           1908..5630
FT                 /product="LOA_Ele3C_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MIRNIQRRAMLAWIKAELLNMALKAVQVNLHHAQSAT
FT                 DVLCRRFTKEKLTVALIQEPWVNKTRILGIQLNSCKLVYDDSQLSPRAAIL
FT                 IRNNTKCFPITEFIKKDIVAVRMEVPTARGKSEILMVSAYFPGDAENIPPP
FT                 EIAAIVHYSRIHNIPFVIGCDANAHHTVWGSTDINTRGEYLLQFLSSKNIN
FT                 ICNVGDKPTFSNSIRQEVLDLTLCSPSISDKIKNWHVSDETSMSDHKHIIF
FT                 DWEGGLTIERTFKDPKKTDWETYSAILQSESYIIENNIKSIMQLESASTCI
FT                 KNKILNAFQESCPTRTTSSSRDVPWWNKTLDKLRKTARREFNRAKRTSDWS
FT                 LYKKALTDYNKELRRSKRKSWVSMCENIEMTPVVARLQKTLSKEHSNGLGS
FT                 IRRVDGSFTVEPSDTLSEMLRIHFPDSIPQSRISEEGTEIVVSVPQQTISL
FT                 VSGTKRDAIKVAKEAFTCARVERAVRSFEPFKSAGMDGIFPALIQKAEKTL
FT                 IPHMVEIFRASLILGHVPDDWRQVRVVFIPKTGKKDKTNPKAFRPISLSSV
FT                 MLKIMEKVLCEYINSKFMKAMPLSQHQFAYQSGKSTISALHSLVNKIEKTL
FT                 QAKEIALVAFLDIEGAFDNASYSSIGSAMLRRNFDPCIATWVHAMLANRQI
FT                 SSELSGSCVTVKATRGCPQGGVLSPLLWSLVVDELLDSLERRGFEVVGYAD
FT                 DVVIIVRGKFEDVIFERMQLALDHTFSWCQREQLGINPSKTTIVPFTKRRK
FT                 VQLRTLLLNETQLTCSKEAKYLGVILDSKLNWNSHLQTVVQKGLNSLWVCS
FT                 RALGKKWGLKPSMIMWIYKTIVRPRITYASLIWWPKTKEATARAKLNKIQR
FT                 IACIAITGAARSTPTSALDAMLNLPRLDQFIKLDAEKSALRLKRTKTLLSG
FT                 DLTGHLSILNEFSINPIVEKCSDRMEMVVNYDIPYKVIMSSRQEWEEGGPN
FT                 IPPGSIKFYTDGSKMNNLAGSGVYGPRTKTSIHLGQWSTVFQAEIYAILEC
FT                 ALLCLKRKYRHASICILSDSQAALQALNTYTCNSKLVWECILALKKLALCN
FT                 RVNLYWIPGHAGLEGNEIADELARNGSANRFTGPEPFFGISDSFLKMELNN
FT                 WLVSQTSSNWDASPNTSQSKRLVNINPKKTQQLLGLSKRDLSLYTGLVTGH
FT                 CPSRYHLQKIGVVQNSNCRFCDDERETSEHLICYCSAQIHCRSRIFGKPFL
FT                 EPADIRIATPSNVIGFIKLIAPDWGNPHTAA"
XX
SQ   Sequence 5807 BP; 1858 A; 1272 C; 1296 G; 1381 T; 0 other;
     tttaacaccg ctgacgctat gacggatccc tgtagtaact tgtccgtatg aacatgaaac        60
     tattgagaac cagagctacc ggtccaaagc ccggataaag tgtggatggt tgtgatggtt       120
     gttatccatg gccatcatgt aaagaaaatg gatacagtgg gggaccgaaa tccgtttagt       180
     ctcgaaatcg tagacgtacg aatctcggcc ccccacaatg aaccccaacg ccaaggtgtg       240
     atgcgacccg tgccgatgga agaatggttg agggggtttc ataaatgctc aatcacacac       300
     ggagcctgaa gagcaccagg gcgaactctt cagtatgcag ctcttgctgc attatggcag       360
     ggtaatgatg cagttgacct ttatttccct agcgactcgt gggaccaaca aaatgaatac       420
     cagtgttagc aaaccaaaca aaggtgacga ctgcctcaca cagtcggaaa agatggaagt       480
     ggagaactca ctaagccagc ttgggcttac agaagaccag ctactgtgca gttcacaaga       540
     ggagatggaa tctactccgt cccagaaacc caacgcaccg ggcaagtcca gcgcgggaca       600
     ttcagaagat cctggtatcc cctcgtcgat tgaatcggtg aacacggacg acgacaagga       660
     tgatggaatc aaggtcgtta tcaacacccc taaacctgta ccatccaaaa aaggacccaa       720
     aatggacgat cctatggatg gtgaggaagc tgaaggcaat gtaactccca gaaaaaacct       780
     aacgcgctca caaaggaagc agctcaaagc tctccgggaa agcggactaa gccgaaacga       840
     ggctttatcc aaaatcctgg caaatgaggg tactgtgctt gcttcttcta agcgaacgag       900
     aaacgacctt gataaatctg ctacggttga agaggattca aagccgaaga agatgaaaca       960
     ccagttagat ccccgagagc gcgctgaaaa atcctcaagc tcagtgccac aaaatggtgg      1020
     gtccaaacga caagccactg gtcagagcta cagcgatatg accaagcgtg tgaaggtcgg      1080
     gataataccc aaagactttc caaccgccca gctcacgacg gctcaactag acgttctaca      1140
     ggatgctctg ttgcttaaag tggaacaaca gcgtgatgag ccactgaaac ccaaattctg      1200
     taaccttgtc tacaaatctg gctacatggt tctaatttgc aaggatcaag agacagctga      1260
     gtgggtgaaa gaaataacac cttcagtaaa tacctgggaa ggtgctgagt tggttgcact      1320
     gaacgaggaa gacattcccc gccaagagct tcttcgagca ttcttccctc aaagctcaac      1380
     cttcgcggac gaacgcatta aggctctcat agagagccag aacgggttga aaacaacgaa      1440
     ttggcgtatc gtgaaaaggt ccatcctcaa tgacatccat gtcgaatgga tctttacggt      1500
     agatggatcg tcaatggaca tgctgtcgaa atccaagttc atcctcaact accgatttgg      1560
     agaaatccag ttgaggaaaa ttaagaggac accctccgtt tccaaccaca agccgaataa      1620
     ggagctggcc caagaaaatt ctgaggaagc ccctgattca aacagtggta aaaggaacgc      1680
     aatttctcgc ccaaagacca ccatgaaggc tagcgtgtcc gctcctaaag gaaaagttcc      1740
     gagctcagct tcaattccct gctcaagtgg taccaaccca aaggtatcta aaactagcag      1800
     tggaaaagaa atgagtgaag tcttgaccac aggggcgaaa ctcgcaggcc tggatgtgat      1860
     gggtgggaaa aacaaagttc tgaaacctaa cccgaaacaa aaccgtgatg atccgcaaca      1920
     tccaaagaag ggcgatgctc gcctggataa aagcggaact cctaaatatg gcgcttaagg      1980
     cagttcaagt gaatctccac cacgcacaga gtgcaacaga tgtactctgt cggagattca      2040
     caaaagaaaa attgacggtg gcgcttattc aggagccgtg ggtcaataaa accaggatac      2100
     taggtattca actaaactca tgtaagttgg tatatgatga tagccagcta tctccaagag      2160
     cggctatctt aatacgcaat aacactaaat gttttcctat tacagaattc attaaaaagg      2220
     acatcgtggc agtcaggatg gaggtgccca ccgctagggg aaaatctgag atcctcatgg      2280
     tttcagcgta ttttcctggc gatgcggaga atattcctcc accagagata gctgcgattg      2340
     tccattacag ccgtatccac aacatcccgt tcgtcattgg ttgcgacgcg aacgcgcatc      2400
     acaccgtatg gggaagtaca gatatcaaca ccagaggtga gtatctttta cagtttcttt      2460
     cctccaaaaa catcaatata tgcaatgttg gcgacaagcc tacattttca aactccattc      2520
     gacaggaagt gttggatttg actttatgta gtccatctat ttctgacaaa ataaaaaatt      2580
     ggcatgtttc tgatgaaaca tcaatgtcag accataaaca cataatattc gactgggaag      2640
     ggggtctaac gatagaaaga acgtttaaag atcctaagaa aactgattgg gaaacctatt      2700
     cagcaattct ccaatctgaa tcatacataa ttgaaaataa tattaaatcc ataatgcagt      2760
     tggaatcggc gtccacctgc attaaaaaca aaattcttaa tgcttttcaa gagagttgtc      2820
     cgactagaac aactagttcg agtagagatg ttccatggtg gaacaaaact ctagataagc      2880
     tcagaaaaac agcgcgtaga gaatttaacc gcgctaagcg tacttccgat tggagcctat      2940
     acaaaaaagc tctaacagac tataataagg agctaaggcg ctcaaaacgg aaatcatggg      3000
     ttagtatgtg cgagaacata gagatgaccc ccgtggtagc caggcttcaa aaaacactct      3060
     caaaagaaca ctccaatggt ctgggtagta tccgtagagt cgacggttca ttcactgtag      3120
     agccaagcga tacattgagt gaaatgttaa gaattcactt ccctgactca attcctcaat      3180
     caagaataag tgaagaaggt actgagattg ttgtttcagt tccacaacag accatatctt      3240
     tggtttctgg gacaaaaaga gacgcaatta aggttgccaa agaagctttt acttgtgcca      3300
     gagttgaaag ggctgtgaga tcttttgagc cattcaaatc tgctggcatg gatgggattt      3360
     tcccagcgtt aatccaaaaa gcggagaaaa cgctaatccc acacatggta gagattttta      3420
     gggcgagctt gattttaggg catgttccag atgattggcg tcaagttcga gttgtcttca      3480
     ttcctaaaac aggtaaaaaa gacaaaacaa atcccaaagc atttaggccg atcagtttgt      3540
     catccgtgat gcttaaaatc atggaaaagg tattgtgcga atacataaat tctaaattta      3600
     tgaaagcaat gcctctttca caacaccaat ttgcgtatca gagtggcaaa tccacgatct      3660
     cagcactaca ttcgttagtc aataagatcg aaaaaacact acaagctaaa gaaatcgctc      3720
     ttgtagcatt tcttgacatt gagggtgcat tcgataatgc ttcttattcg tctataggat      3780
     cggcaatgtt gaggaggaat ttcgacccat gcattgctac ctgggtacat gctatgctag      3840
     ccaatcgaca gatctcctct gagctaagtg gttcgtgcgt cactgtaaag gctacaaggg      3900
     ggtgcccaca aggtggggta ctttcaccgt tgctttggtc actggtggtg gacgagcttc      3960
     tagatagctt agaaaggaga ggcttcgaag tggtaggata tgcagatgac gtggtcatta      4020
     ttgtacgagg caaatttgaa gacgttatat tcgaaaggat gcagctagct cttgatcata      4080
     ccttttcctg gtgtcaacga gagcaactag gaataaatcc ttccaaaacc accatcgtac      4140
     ctttcacaaa acgtaggaag gtacaattga gaacccttct cctaaacgaa acacaattga      4200
     cttgctcaaa ggaagccaaa tatcttggtg tcatacttga ctccaagcta aattggaatt      4260
     cacatcttca aacagtggtg caaaaaggcc tcaattcact ctgggtatgc tccagagcac      4320
     ttggtaagaa atggggcctg aaaccaagta tgattatgtg gatctataaa accattgttc      4380
     gtcctagaat aacttatgct tctcttatct ggtggcctaa aacaaaagag gctacggcaa      4440
     gggcaaagtt aaataaaatc caacgtattg cctgtatagc aattactggt gcagcacgca      4500
     gtacacccac ctctgcctta gacgcgatgc ttaatctgcc ccggctggat caattcataa      4560
     agctggacgc tgagaaaagt gcgttgaggc tgaaacgaac aaaaacccta ctatcaggtg      4620
     atcttacggg tcacctcagt atattaaatg aattttctat aaatccaatt gtagaaaagt      4680
     gtagtgacag gatggaaatg gtagtcaact atgacatacc ctataaggtg atcatgtctt      4740
     ctcgtcaaga atgggaagaa ggtggaccca acatccctcc agggtctatt aaattctaca      4800
     cagatggttc caaaatgaat aatctggcag gttctggagt ctacggaccc cgaacaaaaa      4860
     cctcaattca cttaggacag tggtctacag tatttcaggc agaaatatat gctatcttag      4920
     aatgtgcgtt actatgcctg aagaggaaat acagacacgc aagtatatgt attctctccg      4980
     acagccaagc ggctcttcag gcgcttaaca cttacacgtg taactcaaaa ctagtgtggg      5040
     aatgcattct agctttgaaa aaactagctc tctgcaatcg agttaactta tattggatcc      5100
     cagggcatgc gggtctagag ggaaacgaaa ttgctgatga gctggccaga aacggatctg      5160
     ctaataggtt cactggcccc gagccattct tcggaatatc agacagtttc ttaaaaatgg      5220
     aactgaacaa ctggctggtt agccagacct catcaaactg ggatgcatct cctaatacga      5280
     gtcagtcaaa aaggcttgta aatataaacc caaagaaaac ccaacaacta ttaggtctca      5340
     gcaaaaggga tctcagttta tacactggtc tagtaacagg acactgcccc agcagatacc      5400
     atttacaaaa gatcggtgtt gttcaaaact ccaactgtcg cttctgtgac gatgagcgag      5460
     aaacatcaga acacctcatc tgctattgca gtgcacaaat ccattgtagg tccaggatat      5520
     ttggtaagcc cttcttagag cctgccgata taaggatcgc aacccccagc aatgttatag      5580
     gctttattaa gctaattgca ccagactggg ggaatcctca cactgcagct taggaccatt      5640
     atttctcaat aataaggtgt tcatgagctc agaagtacat agatcattta gtgacataca      5700
     tgtcactgga tgatgtatgt actatacata cagtaaaagg gtatatcaca atagttcaag      5760
     ttaattggac gcagtgattc aacacccgac aaagaaggaa aaaaaaa                    5807
//
ID   LOA_Ele4    repbase;    DNA;    INV; 6400 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6400
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6400
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 20 sequences with >94% identity, and ~100% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           1080..2621
FT                 /product="LOA_Ele4_1p"
FT                 /translation="MEFTRENDLIEKESLEGVSSCSSSILNTPEREDMYVD
FT                 DDDYDDGINVTLLSSSVIMESNKDSLQNTVEEKQMEASIATLNSTNNGDEK
FT                 GCSKLPSTAVATSDKKQKRLNGAGKKRFKYLVAHGHSPNDARILAEXPFRV
FT                 VQPDPSKRRRNADLSESTSSDTNPPKKLARQVVRGQSSKAKSSVQQRLEQA
FT                 SKGGVSLDPKEAEGNNRLNKPLFSEVVNCTRIGILPEGFPNTEFTTQQLVT
FT                 IQNAILKKVAEQRKEPIKPKFGNCLFRPGHMIIICKNQDTVNWLKAKISNI
FT                 KPWENASLIAVEEKDIPRPEILVGFFPRSEQDSNEEILAFIESQNEDLIVD
FT                 AWRILKRYTVKQHHVELIFTVDAVSMKSLENCKFIIDYKFGVAYIRKRNSK
FT                 AEVIEDNEEKASKDETGKSRQHFEGARDVEMSEPGPIGVDNTLKSAENNAH
FT                 CTLTTSTTIVNQCSPHSKEKKNDKSTVVHSISQPDHTKKRNNNLEYRQIES
FT                 HKQTLKKEADKLPANQNK"
FT   CDS           2635..6267
FT                 /product="LOA_Ele4_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTKRSIKFIQENLHHAKAASAILSKTFIKGKLDVALL
FT                 QEPWTKNHTILGLQTTGCKLIYDNTQLAPRAAILLNCNVKFTPISEFIGRD
FT                 IAAISLEVPTAKGKTIVYVASAYFPGDVDEVPPPEVAAFVSHCKKQNKAFI
FT                 IGCDANAHHTIWSSTGINSRGELLFDYVSQNDIDICNKGNSPTFSNAIREE
FT                 VLDLTLCSSKLSDNINNWHVSDEISLSDHKQILFEFCAKDILRETFRDPRK
FT                 TNWELFCSRLKYQKESISDTINSSLELEKAADCLTSSIINAYNESCPAKER
FT                 STCKDVPWWNYRLEKLRKNARKQFNRAKLTRNWSLYKEALTNYNKEIRRSK
FT                 RKNWRYMCEGIESSHEAARLRKVLSKDHNNGLGTLKKDDGSYTADTQESLE
FT                 LMVKTHFPGSIPITNRSRNQDISTSLNGSDRSNIEVADIFTYSKIEWALDS
FT                 FESFKTPGLDGIFPAHLQKCKETIIPILMTLFKSSFLLGYLPTKWRQVRVV
FT                 FIPKSNKKDKTVPKSFRPISLTSIFLKIMEKLIDEYIKSNILKNKPLSRAQ
FT                 FAYQTGKSTLSALHSLVSKIEKTFDTKEILLAAFLDVEGAFDNASFTSMKN
FT                 AMRNRDFPEKMIEWIEEMLSRREISAYLGDSVVKVTAVQGCPQGGVLSPLL
FT                 WSLIVDDLLVKLKLQGFEIIGFADDIIIIVRGKFDKTVSERMQTALNLTLA
FT                 WCNNEGLSINPDKTTIVPFTRRRKVCISALKIGDTKLSLSLSAKFVGVILD
FT                 CKLVWNKHIEQQIEKARNAFWGCKRTFGKKWGLKPKMICWIYSAIVKPIIS
FT                 YASIFWWEKTKQVATQAKLNKLQRLATISITGAIRNTPSNALNAMLNLLPL
FT                 HDYIQMDAVKSAIRVRRSLDSADSELKGHMTILKHFKISPVYLVNEDYMLK
FT                 RNFFDHRFWVADVTRQDWDTGGPTFRSGSLIFFTDGSKQDNMVGSGVFGPG
FT                 VNVSYALGSWPTVFQAEIYAILECADICLKRRYRNANICICSDSKAALNAL
FT                 KSRTYTSRLVWECSKLLQQLSYRNKVNLYWVPGHCGIEGNEKADQLAKQGS
FT                 SMQFIGPQPFFGMASCALKMQLKSWMKAKIKLNWKNAMDSRQSKRFIEPDA
FT                 YQTLRLLNLNKHDLSTYTGLLTGHCPSKRYLKIIGKLPEDMCRFCKLESES
FT                 TEHLLCKCVALYHKRCRYLDKGLLEPNEIQYYHPKQVLHFIRNVVPDWDAR
FT                 Q"
XX
SQ   Sequence 6400 BP; 2187 A; 1127 C; 1202 G; 1881 T; 3 other;
     tttttttttt ttwtctctgg caactctgct tattactgtg ttcgactact atcgcccacg        60
     ttatactttc gctgattttc atagtgtaaa ccgccggtaa attcgcgcgt aactgtttaa       120
     cagtgagatt tgttggtgtt ttgagtggtt ctagtgcagt aaggtaggag catgcatttt       180
     taatgataat aattaattaa ttattagtgc caaataaagt gctcggtgaa agtactatgg       240
     cggtacatac aaaggtataa aagcaatcca atagaggctg cgattgagag aggctgtctt       300
     agtattgagc cttgcatgca agtttcgttg taagcatagt gattgcgcat gatatttata       360
     cggtgcatac tatgatgtat ctgctgcaaa tataaatgca gttgaaagaa tttattgctt       420
     aataaggata tagtaatcgg tcctaatagt gctaatattc cgaaaagaag tactctgtga       480
     tagctacaaa taaatcatta aaatccgtac aataaagtgc tactaaatta tatgtgtcag       540
     tgtttcccaa tttttgattt gtttgacatg aaaaaaagac ggtgtgcagt gagaaagaaa       600
     ttaatattaa aataatttgt tttctccaat agttttttat ttatttattt aattttgtct       660
     ttattttatt ttatcatcat ttttctctaa attttttttt tctttatttg tgtacttatt       720
     aaattattaa ctttttttgt tatwatattt attttttttt tattaatatt attatttttt       780
     ttattaaatt ttaattttta ttttattttt gttttttttt ttcaatatat ttatttattt       840
     tatttatatt atttattttt tgttttcttt tttgtttatt gctactgtac atattgcttt       900
     tcttatgtca gcgtttttaa cttgttcttt ttccctaaat aaacgttctt cataataata       960
     acaataaaaa taagaaaatt aatgcacata tacgtacgac aaacaattaa acataaattt      1020
     tgcaacatta aagtacatat agtattcctc actgttacag agctcaagta cggcgtacaa      1080
     tggaatttac tagagaaaat gacttaatcg agaaagaatc gttggaggga gtaagctcct      1140
     gttcctcatc aattcttaac actcctgagc gggaagacat gtatgtagat gatgacgact      1200
     atgatgatgg gattaatgtc actctactat cgtcatctgt tattatggaa tcgaacaagg      1260
     attccttaca aaatactgta gaggaaaagc agatggaagc ttctatcgct acacttaact      1320
     ctactaacaa tggagatgaa aaaggttgca gtaagctacc atcaaccgct gtagctacaa      1380
     gtgataaaaa gcagaaacgt ctcaatggag ctggcaagaa aaggtttaaa tacctcgtag      1440
     cacatggaca tagtccaaat gatgctcgta tattagcgga aaamccattc cgcgtggtgc      1500
     aacccgatcc atctaagcgt cgcagaaatg cagacctaag tgaatctaca tctagcgaca      1560
     caaatccgcc caaaaagctt gctcgtcaag ttgtaagagg acagtcttct aaagcaaagt      1620
     cctcagttca acagagactt gaacaagctt caaagggcgg cgtctcgtta gatcctaaag      1680
     aggctgaggg aaacaacaga ctcaataaac cattgttctc agaagtagtg aactgtacta      1740
     gaattggcat ccttcccgaa ggctttccta acacagaatt tactacccaa caattggtca      1800
     ctattcaaaa tgctattctt aaaaaagttg ctgaacaaag gaaggaacca attaaaccta      1860
     aattcggcaa ttgtttgttc agaccagggc atatgatcat tatctgcaaa aaccaggaca      1920
     cagtcaactg gctaaaggct aaaatctcca atatcaaacc atgggagaat gcaagcctta      1980
     ttgcagttga agaaaaagac ataccccggc ctgaaatatt agtaggattc tttccacgca      2040
     gtgaacagga ttctaacgaa gaaatcttag cttttataga aagtcagaat gaagacttaa      2100
     tagtcgatgc ttggaggatt cttaagagat atacggtcaa acagcatcac gtggaactca      2160
     ttttcactgt tgatgccgtt tccatgaagt ctctggaaaa ctgcaagttt ataatagact      2220
     acaaattcgg agtggcctat ataaggaaaa gaaattcgaa ggctgaagtt attgaagata      2280
     acgaagaaaa agcaagtaag gatgaaacag gtaaatccag acaacatttc gaaggtgcta      2340
     gagacgttga gatgagcgag cctggcccaa taggggtgga caacacatta aaaagtgctg      2400
     aaaacaatgc acactgcact ctaactacga gtaccactat cgtcaatcaa tgctctccac      2460
     attccaagga gaaaaagaat gataaaagca ctgtggtaca ctctatttct caaccggatc      2520
     atactaaaaa aaggaacaac aatttggaat accgccagat agaatcccac aaacaaacac      2580
     ttaaaaaaga ggcggataaa ctgcctgcaa atcaaaacaa ataatttaag agaaatgacc      2640
     aaaagaagca taaaatttat acaagaaaac cttcatcatg caaaggctgc ttctgcaatt      2700
     ttgagcaaaa cgtttatcaa aggcaaactg gacgtggctc ttctacaaga gccatggaca      2760
     aaaaaccata caattttagg attacaaact actggatgta agttgattta tgataatacg      2820
     cagctcgctc ctagagctgc aattctactc aactgtaacg ttaaattcac accaatttca      2880
     gaattcatcg gaagagatat tgctgctatt tccctagagg tgccaaccgc aaaaggaaaa      2940
     acgattgtgt atgtcgcatc cgcttatttt cctggcgatg ttgatgaagt acctcctccg      3000
     gaagttgcag cttttgtgtc tcactgcaaa aaacaaaaca aagcatttat catcggatgt      3060
     gacgcaaatg cgcatcacac tatatggagc agcacaggaa tcaacagtag aggtgagtta      3120
     ctctttgact acgtatctca gaatgacata gatatatgca ataagggtaa ttctccaaca      3180
     ttttccaatg ctatacgaga ggaagtattg gacttaactc tttgtagttc aaaactctca      3240
     gataatataa acaattggca tgtatctgac gaaatatctt tatcagacca taagcaaatt      3300
     ttatttgaat tctgcgcaaa agatatatta agagaaactt tcagagaccc acggaaaaca      3360
     aactgggaat tattttgttc tcgacttaaa taccaaaagg aatccatttc tgacacgata      3420
     aattcatctt tggaactaga aaaggcagcc gactgcttaa cttcttccat cattaatgct      3480
     tacaatgaaa gctgtccagc aaaagaacga tctacttgta aagatgttcc ttggtggaac      3540
     taccggttag agaagcttcg aaaaaatgct cgaaaacaat tcaatcgggc aaaattgaca      3600
     agaaattggt ctctgtataa agaggcctta accaattata ataaagaaat aagaagatca      3660
     aagcgtaaaa attggagata catgtgcgaa ggcatagaaa gttctcatga agctgcaaga      3720
     cttcggaaag ttctttctaa ggatcataat aatggtctag gtacgttaaa aaaggacgat      3780
     gggtcctaca ctgcagatac acaagaaagt ttggaattaa tggtgaaaac tcattttcct      3840
     ggatccatcc ccataacaaa tcgatcaaga aatcaagata tcagtacctc tttaaatgga      3900
     tctgatagat ccaatataga ggttgcagat atttttacat attctaagat tgaatgggca      3960
     ttggattctt tcgaatcttt caaaacacct ggtttagatg ggatttttcc ggcgcatctt      4020
     caaaagtgca aggaaactat tatccctatt ctaatgactc tattcaaatc tagctttctt      4080
     ctgggatatc ttccaactaa atggaggcaa gtccgggtag tgtttatacc gaaatctaat      4140
     aaaaaagata aaacagtgcc aaaatcattt aggccaataa gtcttacatc aatattttta      4200
     aaaataatgg aaaagcttat agatgagtac attaaatcaa atatacttaa aaataagcca      4260
     ttaagtagag ctcaattcgc ttatcagact ggtaagtcga cactttcagc tctccattcg      4320
     ctggtttcaa aaattgaaaa aacttttgac actaaggaga tactattggc tgcttttctc      4380
     gatgtagaag gcgcgtttga caacgctagt tttacatcga tgaaaaacgc catgagaaat      4440
     cgagatttcc ctgaaaaaat gattgagtgg atagaagaga tgctatctag aagggaaata      4500
     tcagcatatc taggagattc agttgtaaag gtaacagctg ttcaaggctg tccgcaaggg      4560
     ggagttctct ctcctcttct ctggtctctg attgttgatg acctacttgt aaagctaaag      4620
     cttcaaggat tcgaaataat tggatttgca gatgatatta ttattatagt ccgcggaaaa      4680
     ttcgataaaa ctgtttccga gcgaatgcaa acagcactca acttaacctt agcatggtgc      4740
     aataatgaag gattaagtat aaatcctgat aaaactacaa tagtaccgtt tacaagaaga      4800
     cgtaaagtct gcatttcagc tctcaaaata ggagatacta aactatcctt atctcttagt      4860
     gccaaatttg taggtgttat attagattgt aagcttgttt ggaataagca tatagaacaa      4920
     cagatagaaa aagcaagaaa tgctttctgg ggctgcaaaa gaacctttgg taaaaaatgg      4980
     ggtctgaaac cgaagatgat atgctggatc tattcggcca ttgttaaacc cattatttca      5040
     tacgcatcaa ttttttggtg ggaaaaaacc aaacaagtcg ctactcaagc taagttaaat      5100
     aaactacaaa ggcttgctac tatttcaatt actggggcaa tacgaaacac cccttcaaat      5160
     gcgttgaacg caatgttaaa tcttcttcca cttcatgact atatacaaat ggatgcagtt      5220
     aagagtgcta tcagagtcag aaggtcctta gatagcgctg atagtgaact aaaaggacat      5280
     atgactatat tgaagcactt caaaataagt ccagtgtact tagtgaacga agattatatg      5340
     ttgaagcgta acttttttga tcatcgtttt tgggttgctg atgtaactcg ccaggattgg      5400
     gacacaggag gaccaacttt ccgatctgga tcattaattt ttttcactga tggttcaaaa      5460
     caagataaca tggtagggtc aggagtgttt ggcccaggag taaatgtatc ttatgcactg      5520
     ggaagttggc caacagtttt tcaggccgaa atttatgcca ttcttgaatg cgctgacatt      5580
     tgtcttaaaa ggcgctaccg gaatgctaat atatgtattt gttcggatag caaagcagcc      5640
     ttgaacgctt tgaagtctag aacttacaca tcaagacttg tttgggagtg ttccaagcta      5700
     ctgcagcagt tgtcctatcg taataaggtt aatctatatt gggttcctgg ccattgcgga      5760
     atagaaggaa atgaaaaagc tgatcagtta gcaaaacaag gttcttccat gcaatttata      5820
     gggcctcaac cgttcttcgg aatggcctct tgtgctctga aaatgcaatt aaagagctgg      5880
     atgaaggcaa aaattaaact aaactggaag aacgcaatgg actctcgtca gtccaaacga      5940
     ttcatcgaac cagacgccta tcaaacgctg aggttgttaa acctcaataa acacgatcta      6000
     agtacttata ctggcttatt aacaggccac tgccccagca aacgttacct taaaattata      6060
     ggtaaattgc cagaagatat gtgtcgtttc tgtaaattag aaagcgaaag cactgaacat      6120
     ttgttgtgca agtgtgttgc actataccac aagcgttgta gatatttaga taaaggcttg      6180
     ctagagccta atgaaattca gtactatcat ccaaaacagg tactacattt tatccgaaac      6240
     gtagtacctg attgggatgc acgccaatag ctgtggagat agttacttca tatagaaaca      6300
     tatttctaca gtacggcaaa aacaaagagg ataacaccac aatagatcaa cttaatggtc      6360
     gcagtggtat catgtcccca cagaggaaaa aaaaaaaaaa                            6400
//
ID   LOA_Ele5    repbase;    DNA;    INV; 4482 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4482
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4482
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >98% identity, and ~99% identical to the original
CC   sequence in [1]. The consensus is ~76% identical to Lian-5_AAe.
CC   Alignment with other Lian elements shows that this family has an
CC   internal deletion corresponding to ORF1.
XX
FH   Key           Location/Qualifiers
FT   CDS           689..4351
FT                 /product="LOA_Ele5_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKFIKFLQVNLHHAKGASSVLSRRFRKEGLDVALIQE
FT                 PWYNKGKILGIETNKCNLFYDGNQSSPRTAVLINNTLKCYPLTEFIQRDIV
FT                 AVMVEVPTTRGITEVVIASAYFPGDALEVPPPEIVSFVNHCRKINKSFIIG
FT                 CDANAHHTVWGSTDINSRGEYLLDYLCSSNIDICNKGNEPTFSNAIRQEVL
FT                 DLTLCNAAIYDKISNWHVSEETSLSDHKHIMFEWSGGDYPRIAFRNPRKTN
FT                 WEQYAQCLNSNSFTKDENIDSIQKLESFSQEVKGKIIHSFHTNCPMKQSSS
FT                 SRDVPWWNTKLERLRKLSRKLFNKAKQTSDWAQYRRALTEYNREIRKSKRR
FT                 SWIQTCENISATPVVARLQKALAKDHTFKLGSLKREDGVSTKTPDETLNLI
FT                 METHFPGSISCVDSNSSEPIEYERCSVEALSSDRTVISEPDLADEIFTNAR
FT                 VKHAIRSFQPYKSAGVDGIFPALIQNGEAVLISPLIEMFKASLRLNYVPSD
FT                 WRAVKVIFIPKIGKRDKMHPKSYRPISLSSILLKTMEKVLYDYINSTYMLK
FT                 CPLSDSQFAYQSGKSTVTALHTLVTKVEKTLSVKEIALCSFLDIEGAFDNA
FT                 SYSSMTRAMKKRNFNKNIINWINNMLAKREITSELGSSSITVRATKGCPQG
FT                 GVLSPLLWSLVVDDLLKSLEEKGFEVVGFADDIVIIVRGKFDNIISERMQL
FT                 ALNLTNSWCIQEGLNINPSKVVIVPFTKKRKFILKALKLGGVQMHLSEQVK
FT                 YLGVILDSKLNWNAHIEYVTNKATSSFWACSKIFGRRWGLKPKMIMWIYLA
FT                 IIRPKVTYASLVWWPKTKEATTQAKLSKVQRLVSIAITGAMQSTPSKALDA
FT                 ILHLLPLYEFVQLEAEKSFLRLNRLNKFKSGDLVGHLNISQHIHCGPVMTM
FT                 HEDWMKTVDNSDIPYNVCDTTRTDWDVGGPNVRQGSIKFFTDGSKIGTQTG
FT                 AGIYGPGTNVSVAMGSYPTVFQAEIFAILECANICLKRKYRHANICIFSDS
FT                 QAALKALGAYKCSSRLVWECILSLRKVCQENSVCLYWVPGHNGIVGNEKAD
FT                 ELAKQGSNTQFIGPEPFCGISYCALNMELKSWERQRVMTNWMVTTRCNQSK
FT                 RFLVPNETITKRLLELNKRVLCIYTGLLTGHCPSRYHLKNIGQVQNDICRF
FT                 CNMERETSEHLLCSCSALYKRRSKFLNGGYLPPSEIWTGNPSKVVGFINSI
FT                 LPDWEKTRQSA"
XX
SQ   Sequence 4482 BP; 1475 A; 779 C; 918 G; 1310 T; 0 other;
     gcccactgtt ctcaagtgca caagtgtttt tccggctcac atagaaattg actttctatg        60
     tttaattacc ggtataaaaa tcgtgagtgg cagtgcaaaa ggtgcattag ataccgcttt       120
     gaagattttc gcgtgtgtaa gagtgagaaa cagtgaaaat aaacgacttt tcctcataca       180
     aaaatctggt gtgacggtaa ataaaagata taaaacgatt aaagaacacg gccatcatgc       240
     atgatgatag tgacagcaag aattttcttg catagcatgc tattatatgc ttggatggta       300
     agttgcatgc aacattttgt caaaacttgg atgatatgac atctgtgaaa cttgcatcaa       360
     atcagtgctg caagtttcgc tggaaaattg taagcttaaa ataaaagtaa aaaaaaaaaa       420
     tgtttttttt ttaataacag taaaccataa aatatattaa actcattatt cattatcatt       480
     attgtttttt tttttaactt attgacattt ttttttttaa ttcttattta tttttttttt       540
     ttttgtggat gataaacgtc ttgattagtt ttaaaagttg tgtcacaggt gacatggttg       600
     gtcataattc ttcaagagta ttacgtcata aaggttgcct aagacacaca acaataaaac       660
     attttctgtg acataaataa tcacaaatat gaagttcatc aaattcctgc aggtgaacct       720
     ccatcatgca aaaggtgcat cttctgtttt gagtcggagg ttcagaaagg agggattgga       780
     cgtggcacta atacaagagc catggtataa taaaggaaaa atacttggaa ttgaaaccaa       840
     taagtgtaac ttattttatg atggtaatca gagttcaccc agaactgctg tactcattaa       900
     taacactttg aaatgctacc ctttaactga atttatacaa cgtgacattg ttgcggtcat       960
     ggttgaggta ccgaccacta gaggaattac agaggttgta atagcctcag cttatttccc      1020
     tggtgacgct ttagaggttc ctcctcctga gatcgtttca ttcgtcaatc attgcagaaa      1080
     aatcaataag tcgttcatta ttggctgtga tgctaatgca catcataccg tatggggtag      1140
     tacggatatt aatagccgtg gtgaatatct tctggactac ctgtgttcta gtaacataga      1200
     tatatgtaat aagggtaatg aacctacctt ttcaaatgca atcagacagg aggttttgga      1260
     tttgacattg tgtaatgctg caatttatga taaaatttca aactggcacg tgtcagaaga      1320
     aacttccctg tccgatcata agcacattat gtttgagtgg agcggaggtg attatccgcg      1380
     tattgctttt cgaaatccca ggaaaaccaa ctgggaacaa tatgcacagt gcttgaattc      1440
     caactcattt acaaaggatg aaaacattga ttctattcaa aaactagagt cgttttctca      1500
     agaagtaaag gggaaaatta ttcattcgtt ccatactaat tgtcctatga agcaatcttc      1560
     ttctagtaga gacgtgcctt ggtggaacac taaacttgaa aggttacgaa aactttctcg      1620
     taaacttttt aataaagcga aacaaacttc agactgggct caatacagga gagctttgac      1680
     tgaatacaac agggaaataa gaaaatctaa gagaagatct tggattcaaa catgtgaaaa      1740
     tataagtgct actcctgtag tcgcaagact acagaaagcg ctggccaaag atcacacgtt      1800
     caagctaggg tcgttgaaac gagaggacgg agtttctacg aaaactccgg atgaaacctt      1860
     aaatttgatt atggaaactc attttcctgg gtcaatttct tgtgtggatt caaacagctc      1920
     tgaaccaatc gagtatgaaa ggtgttctgt cgaagctttg tcatctgata gaacagtaat      1980
     ctctgaacca gatcttgcag acgaaatatt tacaaatgca agagtgaaac acgctataag      2040
     atcttttcaa ccttacaaat ctgcaggagt ggacggaata ttcccagcac tgattcaaaa      2100
     cggagaagca gtgctgattt cgcctctaat tgagatgttt aaggcgagct taagattaaa      2160
     ctatgttcca tctgattgga gagcagtgaa ggttatcttt attcctaaaa taggaaaacg      2220
     agataaaatg catccaaagt catatagacc tattagtctc tcatcaattt tgttaaagac      2280
     tatggaaaaa gtgttgtatg attacataaa ttcaacatac atgctcaagt gtccattatc      2340
     tgactcgcag tttgcttatc aatctggtaa gtcaacagtt acggcacttc atacattggt      2400
     aacaaaagtg gaaaaaactc tttcagtgaa agaaatagca ctttgctcat tcttggacat      2460
     tgaaggagcc ttcgacaacg cttcctattc ttcaatgact cgtgcaatga agaaaaggaa      2520
     tttcaacaag aatatcatta actggatcaa taatatgctt gcaaaaagag aaatcacttc      2580
     cgagctggga agttcgtcta taacagtaag ggctacaaaa ggttgtccac aaggaggagt      2640
     cctctcgcct ctattgtggt ctttagtagt tgacgatctt cttaaaagct tggaagaaaa      2700
     aggtttcgaa gttgtaggat ttgcagatga tatagtcatt attgtgagag gaaagtttga      2760
     caatatcatt tcagaacgaa tgcaactggc cctaaactta accaattctt ggtgtattca      2820
     ggagggcctt aacataaatc cttcaaaagt agtaattgtc ccttttacta agaaaaggaa      2880
     gttcatccta aaagctttga agcttggagg agtacaaatg caccttagtg aacaagtcaa      2940
     atacttagga gtaattttgg attctaaact gaattggaat gctcatattg aatatgtgac      3000
     taataaagct acaagttcat tttgggcatg ctccaaaatt tttggcagaa gatggggctt      3060
     gaaaccaaaa atgataatgt ggatttattt ggccataatt cgtccaaaag taacatatgc      3120
     ttcgctagtg tggtggccaa aaacaaaaga ggccacaaca caagcaaaac tatcaaaagt      3180
     acaacgtctt gtgtccatcg ctataacggg agcgatgcaa agcactccgt caaaagcatt      3240
     agatgctatt cttcatctgc taccgttgta cgaatttgta caattagaag cggagaagag      3300
     ttttctaagg cttaatagat taaataagtt caaatcaggt gatcttgttg ggcacttgaa      3360
     tatttcacaa catatccatt gtgggccagt gatgactatg catgaggact ggatgaaaac      3420
     tgtggacaat tctgatatcc cttacaatgt atgcgatacg acgcgtacgg attgggatgt      3480
     tggaggtccc aatgttcgtc aaggctccat aaaattcttc acagatggct caaaaattgg      3540
     gacacaaact ggagcaggaa tctacggccc tgggacaaac gtctccgtgg cgatgggaag      3600
     ctatccaaca gtattccaag cggagatttt tgccatacta gaatgcgcta atatttgtct      3660
     taagagaaaa tacagacatg caaatatctg tattttttct gatagtcaag ctgcgttgaa      3720
     ggcattgggc gcatataaat gctcatcaag acttgtctgg gaatgcattc tctcattgcg      3780
     aaaggtgtgc caagaaaact ctgtatgttt gtattgggtt ccgggacaca atggcattgt      3840
     aggaaatgaa aaggcagacg agcttgctaa acagggttca aatacacagt tcattggacc      3900
     ggagccattc tgtggcatat cgtactgtgc actaaatatg gaactaaaaa gctgggaacg      3960
     acaaagggtg atgaccaatt ggatggtcac cacaaggtgt aatcaatcta aaagattttt      4020
     agttccaaat gaaactatca cgaaaagact cttagagctc aacaagagag ttctttgtat      4080
     atacactggc ctattaactg gacactgtcc gagtagatat catttaaaga atattggtca      4140
     ggttcagaat gatatctgtc gtttctgtaa catggaacgc gaaacctcgg aacacctgct      4200
     ctgcagttgt agtgcattat acaagcgcag atccaaattt ctaaacgggg gttatttacc      4260
     accaagtgaa atttggactg gaaatcccag taaggttgtg ggttttatta actctatttt      4320
     gcctgactgg gaaaagacgc gtcaaagtgc ttaagctgtt cacttgattc atggtggaca      4380
     gttttagttc cttcaatgat gcgaatagta aaaagggaca tgccacaaaa gttcaatcca      4440
     atggacgcag tggcttaacc ttcccaacaa aaaaaaaaaa aa                         4482
//
ID   LOA_Ele6    repbase;    DNA;    INV; 5259 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele6.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5259
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5259
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 27
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           51..1421
FT                 /product="LOA_Ele6_1p"
FT                 /translation="MVLVPPKESTPKRPRNINNSSNSDSKPIPKKQKGQSI
FT                 HISVNSRMENIRQDQPTALENQQSTYSEVAKWVRVGILPKNYPQIQLTDEQ
FT                 LYSLQEAILLKVTLQRRESFKPKFTNCWQRTGHLVINCQDRETSDWLNSVV
FT                 PTLIPWKGAELTVVNADDIPRLDVMVGFFPQSVNDENDTIRVFIESQNDGL
FT                 STDRWKIIQRNILYENHVEWFFTVDEASMQHFKTCNFLINYKFGQTKLRKK
FT                 GMYKPGVDGMVISRDEPKELEPVSSVDPGTEQSLSVPVTSGTDGKVPEAKS
FT                 SKNHHQSTQSTGLPKNENSQGKFDDRIYSGPSKNSNHFGLQVDVQCPGLAK
FT                 DQQCSTILMDQKSSERSKDRNTFGLPKDQSGYQKDQNYSGRLKDQNAAGPS
FT                 KDRNCSGSQRDRNTSGLPMDRNTSGLPKARSRSGHIKDRNSSEPSKEQMPS
FT                 GPEKDQHSRKYK"
FT   CDS           1477..5160
FT                 /product="LOA_Ele6_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNTDIKFIQINLHHAKGATGILCRRFLKENFSVAFIQ
FT                 EPWVNKNRVLGIAGQIGKLVYDEGNSNPRTAILIKGGIKFVPITQFIAKDI
FT                 VVIRMEIPTTRGKTEAYVVSAYFPGDVEAVPPPELTAFINYCKTNNKHFII
FT                 GCDANSHHTIWGSTNINKRGEDLFEYISSNNIDLCNKGNQPTFITKAREEV
FT                 LDITMCSPLFSTRIKNWHVSDEQSLSDHKHIVFQYNAGEIVKIAYKNPRNT
FT                 NWERYASTMQSECLLLNTTIQSTMQLDRVAKNITEQIIQAYNVNCPVKEEI
FT                 SNREVPWWNKTLNNLRKKSRKLFNKAKISGQWDQYKKALTMYNKEIRKSKR
FT                 RTWRSYCENIEKTPDIAKLQKVLSKDHSNGLGNLKKTNGDFTVNSQETLEM
FT                 LMETHFPGSNLVVSDNEESINVNDNYGPTGTIRYNSLIPDTIFTKSKVEWA
FT                 MNSFEPFKSPGMDGIFPALLQKGGEILLDSITNIFKASLMLGHVPKIWTQV
FT                 RVVFIPKVGKRDKTNPKSFRPISLTSTMLKIMEKIIDEYIKTEYLQKIPLN
FT                 RYQYAYQTNKSTVTALHNLVTKIESTLDRKEIALVAFLDVEGAFDNATFSS
FT                 IKKSMENRHFDPGIIAWIMEMLKNREVSAELGVSSITIKTTKGCPQGGVLS
FT                 PLLWSLVVDDILNKLTEQGFEVIGFADDVAIIVRGKFEHTITDLMQSALNC
FT                 ISRWCQNEGLNINPSKTVLVPFTRRRKVTFKNITIEGCIVQYASSVKYLGV
FT                 ILDDKLNWNLHLEQVISKATIALWVSKNTFGKKWGLKPKMIHWIYTVIVRP
FT                 RVVYAALVWWPKTKQSTAQKKLEKLQRLACMAMTGAMRSTPSKALEAVLYK
FT                 LPLHQHVQMEAEKNALRLRRTNIFLEGNLSGHLSILKDFQINPLVVMNEDW
FT                 MERTLNLDIPYKVVETDRQMWESGGPSISPGSIMFYTDGSKMSDNTGAGIT
FT                 GPGVNVSIPMGRWTTVFLAEIYAILECASICLRRKYRHARICVFSDSQAAL
FT                 NALKSYTCQSKLVWECIQVLKQLAMNNQVSLYWVPGHCGIEKNEKADFLAR
FT                 RGSNTQFLGPEPFCGVSKCVIQMEIKKWERNMIQSNWIGTNTSRQSKLFIT
FT                 PNKQITEKLLNLNKKSFCIVIGLFTGHCPARYHLKKMGRSPTDICRFCDCE
FT                 IETSQHLLCECSALFAQRRQYFNKGILSPFEIWQGNPNKVVEFILRIIPDW
FT                 GTSHYQSTAVTLNSNLSS"
XX
SQ   Sequence 5259 BP; 1865 A; 972 C; 1099 G; 1323 T; 0 other;
     gtttcaagaa actgttgttg agtggacatg gtcgggagga ggcactgtcg atggttctag        60
     tgccaccaaa agagtcgact ccgaaaagac ctaggaacat caacaacagt agtaacagcg       120
     acagcaaacc catccctaaa aagcagaaag gacagtcgat tcacatttct gtcaacagcc       180
     ggatggaaaa tatcagacaa gatcaaccaa ctgctctcga aaatcaacaa tcgacctaca       240
     gtgaggtggc caaatgggta agggtaggta ttctgccgaa gaactatcct caaatccagc       300
     tgacagacga acaactgtac agtctacaag aggccatttt gctgaaggtt acgctgcaaa       360
     gaagggagtc tttcaagcca aagtttacga actgttggca acgaacagga catttggtga       420
     taaactgcca ggatagggaa acgtcggatt ggctaaattc agtggttcct acgcttatcc       480
     cttggaaagg cgcggaactt acggtagtca atgcggacga tatcccaaga ctggacgtaa       540
     tggtaggctt tttccctcaa agtgttaatg atgaaaatga cactatcaga gttttcatag       600
     agagccagaa tgacgggttg agtaccgaca ggtggaaaat cattcaacgt aacattctct       660
     atgagaatca cgttgaatgg tttttcacag ttgacgaggc gtccatgcaa cattttaaga       720
     catgcaactt cctcatcaac tacaagttcg ggcaaacaaa gctacggaaa aaagggatgt       780
     acaaacctgg ggtagatggg atggtaatct cgagagacga gccgaaggag ctggaaccgg       840
     taagtagcgt ggatcctggg accgaacaaa gccttagtgt cccggtgaca agcgggacag       900
     acggtaaagt gccggaagca aagtcctcga aaaatcacca ccaaagcact cagagtacag       960
     ggcttcccaa aaacgaaaac agccaaggga aattcgatga ccgaatttat tctgggccgt      1020
     ctaagaactc gaaccatttt gggctccaag tggatgtaca atgccctggg ctcgcgaaag      1080
     accagcagtg ctccacaata ctgatggacc aaaaatcttc agagcgttca aaggaccgga      1140
     atacttttgg gcttccgaaa gaccaatctg gctatcaaaa agatcaaaat tattctgggc      1200
     gactaaaaga ccagaatgct gctgggcctt cgaaggaccg gaactgttct gggtctcaga      1260
     gggaccgtaa cacatctggg cttccaatgg accggaacac atctgggctt ccaaaggccc      1320
     gaagtcgttc tggacatata aaagaccgga attcatccga accttcgaag gaacaaatgc      1380
     cttctgggcc tgaaaaagac cagcacagca gaaaatataa ataacaatcg aaacatgaag      1440
     agtgaattac tagtcctcta atgaacattt ataaaaatga atactgatat taaatttatt      1500
     caaataaatc ttcaccatgc caaaggtgca acaggaatac tttgtcgaag atttttgaaa      1560
     gaaaatttta gtgtcgcgtt tattcaagaa ccttgggtta acaagaaccg agttcttgga      1620
     atcgctgggc aaataggaaa actagtttat gatgaaggaa actcaaatcc tcggacagca      1680
     atcttaataa aagggggaat aaaattcgta cctataacac agtttattgc aaaagatata      1740
     gtcgtgattc gcatggaaat acccacaact aggggcaaaa ctgaagctta tgtagtttca      1800
     gcttatttcc ctggagatgt ggaggcggta cctccacccg aattgacagc tttcattaat      1860
     tattgtaaaa ctaataataa acactttatc attggttgcg atgcaaattc ccatcataca      1920
     atctggggaa gcaccaacat caataaaaga ggggaagacc tttttgaata catatcttcg      1980
     aacaacatcg atttatgtaa caaaggaaat caacctacat ttataaccaa agctagggaa      2040
     gaagtattgg acataaccat gtgcagtcct ttattttcga cgcgtataaa aaactggcat      2100
     gtttcagatg aacaatcttt atctgatcac aagcacatag tgtttcaata caatgctggg      2160
     gaaatagtta aaatagcgta taaaaatccc aggaacacta actgggagag atatgcttca      2220
     acaatgcaat ctgaatgttt attgctaaat actacaattc aatcaacaat gcaattggat      2280
     agagttgcaa aaaatattac tgaacaaata atacaagcat acaacgttaa ttgtcctgtc      2340
     aaggaagaaa tctcaaatcg agaggttcct tggtggaata aaacattaaa taatttaagg      2400
     aaaaaatcgc gaaaactttt caataaagcg aaaatttctg ggcaatggga ccaatataaa      2460
     aaggccctta caatgtacaa caaagaaatt agaaaatcaa aacgacgaac ctggagatcc      2520
     tattgtgaaa acatagagaa aactccagat atagctaaac tgcaaaaagt gctttccaaa      2580
     gaccattcaa atggtctggg aaatttaaag aaaacaaatg gcgattttac tgttaactca      2640
     caagaaaccc ttgaaatgtt gatggagact catttcccag gatcaaactt agtggtaagt      2700
     gataatgaag aaagtataaa cgttaacgat aattatgggc cgaccgggac tataagatat      2760
     aattcgctta tacctgatac cattttcaca aaatctaaag ttgaatgggc gatgaactct      2820
     ttcgaaccat ttaaatctcc gggaatggac ggtatatttc ctgcactgct tcagaagggt      2880
     ggggaaatac tgctggattc tataacaaat attttcaaag caagtttaat gttaggccat      2940
     gtaccaaaaa tatggaccca agtacgagtt gtcttcattc ctaaagtagg aaaaagagac      3000
     aaaacaaatc caaaatcttt taggccaata agtctaacat ctactatgct taaaatcatg      3060
     gaaaagataa tagatgaata tatcaaaaca gaatacctac aaaagattcc tcttaacagg      3120
     tatcagtatg catatcaaac taacaaatct acagtcactg ctctacataa tttggttaca      3180
     aaaatagaaa gtactctcga tagaaaagaa attgctcttg tagcatttct tgatgtagaa      3240
     ggtgcttttg ataatgcgac attcagttca ataaaaaagt caatggaaaa caggcatttc      3300
     gatcctggca ttatagcttg gattatggaa atgctgaaaa atagagaagt atctgctgaa      3360
     ttgggagtat catctataac aataaagacc actaagggat gtcctcaagg aggcgtattg      3420
     tcgcctttat tatggtcgct tgttgttgat gatattctta ataaattgac agaacaaggc      3480
     ttcgaagtta tcggttttgc tgatgatgtg gccataatag ttcgtggaaa gtttgaacat      3540
     accatcacag atttaatgca gtctgcacta aactgcattt cgcggtggtg ccaaaacgaa      3600
     gggttgaata taaacccatc gaaaaccgtt ttggtaccgt tcactcgcag acggaaagta      3660
     acttttaaaa atataacaat tgagggatgt attgtccaat atgcatccag tgtaaaatat      3720
     ctaggagtta ttctagatga taaacttaat tggaacttgc acttagagca ggtaataagc      3780
     aaagccacta ttgccctgtg ggtgagtaag aatacttttg gtaaaaaatg gggtctcaaa      3840
     cctaaaatga ttcattggat ttatacggtt attgtaaggc ccagggtagt ttatgccgca      3900
     ctagtatggt ggcctaaaac aaagcaaagc acagcccaaa aaaagctaga aaaattgcaa      3960
     cgtttggcct gcatggctat gacaggagca atgcgtagta cgccatcaaa ggccttagag      4020
     gcagttctgt ataagcttcc actacatcaa cacgtgcaaa tggaagctga aaagaatgca      4080
     ctaagactgc gaagaacgaa tatctttctt gaaggaaatc tttccggaca tctaagtata      4140
     ctgaaagatt ttcaaattaa tccattagta gtcatgaacg aagactggat ggaaagaacc      4200
     ctaaacctag atataccata taaggtggtt gaaacagacc gccaaatgtg ggaatcgggt      4260
     gggcctagta tttcaccagg atcgattatg ttctacaccg atggttctaa aatgagtgat      4320
     aacacagggg ctggaataac aggtccagga gttaatgttt caataccaat gggacgatgg      4380
     acaactgttt tccttgcaga aatatacgcc atcttagagt gtgcttctat atgtcttaga      4440
     agaaagtata gacatgcaag gatttgcgta ttttcagaca gccaggcggc tctgaacgca      4500
     ttaaaatcct atacatgcca atcaaaactg gtttgggaat gcatacaagt attgaagcaa      4560
     ctggctatga ataaccaggt gtccctgtac tgggtaccag gccattgtgg aatcgaaaaa      4620
     aatgagaaag ctgattttct ggctagacga ggatcgaata ctcagttttt aggaccagaa      4680
     cccttttgtg gagtttcaaa atgtgtaata caaatggaaa taaaaaaatg ggagcgtaat      4740
     atgatacagt cgaactggat tggtacaaat acatcaagac agtctaaact gtttataact      4800
     ccaaataaac aaattacaga aaaacttcta aacttaaata aaaaatcatt ctgtatagtt      4860
     attggactat ttacaggaca ttgtccagct agatatcatt taaagaagat gggtcgaagt      4920
     ccaactgata tctgtcggtt ttgcgactgt gagatagaga cctctcaaca cttgctttgt      4980
     gaatgctcag cactatttgc gcaaagaaga cagtatttca acaagggcat actgagtcct      5040
     tttgaaattt ggcaaggaaa tcccaataag gtagttgaat tcattttaag aatcatacca      5100
     gattggggta cgtcgcacta tcagtcaact gcagttactc tcaatagtaa cttgtcgtcc      5160
     tgaaaatatg cgaaaaataa acaggggtat accacaatag atcaacttaa tggtcgcagt      5220
     ggttcaaatc ccaacaaaag aaaaaaaaaa aaaaaaaaa                             5259
//
ID   LOA_Ele6B_AAe repbase;    DNA;    INV; 6067 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   LOA_Ele6B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6067
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1424-1424 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >94%
CC   identity. The consensus is ~80% identical to LOA_Ele6.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..2232
FT                 /product="LOA_Ele6B_AAe_1p"
FT                 /translation="MESKEESMDTVPTEIMEVDEGKKEDDLLQSVSADELG
FT                 GAGSVSSSILNSDDEDDGVNVTIIATRTDMQEYQQNEQREILKPKLSGAKK
FT                 KQFKKLLISGHGREEALSMVLAPSNVSTPKRPRNINSSTNSDGKPIPKKQK
FT                 GLLNHQSVNKRMENIRQDQPTTMSGVQQPTYSEVAKWVRVGILPTDYPQTQ
FT                 LTTEQMDIVQGAILQKVTQQRKESFKPKFSNCWQRTGHLVINCQDNDTADW
FT                 LYSVVPALLPWEGAELAVIDADDIPRLEVMIGFFPQSVNDDNDTIRIFIES
FT                 QNDGLSTDKWRIIQRNVLYEKHVEWFFTVDEASMQHFKACNFLINYKFGQT
FT                 TLRKKGMYKSGSDGMAKSSDDPKGQELVSSVCSGNLHVPATCATDGKLPEL
FT                 KSSKYHQQTNQNTGLPKDQIPQGIPEAQNHPGTSKSSSYFGHPVTGKCSGH
FT                 SKDQQYSRTHTDPNSSEGSKDRNTPGLATDKNETGPPKNQNCPGTSKYHDV
FT                 SEPSRDRNFSGAKKDRNISGPSKDRTISGPPKDRNVSELSKERNCSGLSKD
FT                 RNSAKSKKKQNHLDH"
FT   CDS           2289..5966
FT                 /product="LOA_Ele6B_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MNNIKFIQINLHHAKGATGVLCQRFKKENFSVALIQE
FT                 PWAHKSRVLGINSLIGKLIYDENSSKPRTAILIKGGIKFVPITQFITKDIV
FT                 VIRLEIPTSRGKTEAYIASAYFPGDGDTVPPPELADFVNYCKMHNKYFIIG
FT                 CDANSHHTIWGSTNINKRGEDLFEYISSNNMDLCNKGDQPTFVTKVRQEVL
FT                 DLTMCSPVLSTNIKNWHVSDYESLSDHKHIVFEYIAGALIKIAFKNPRNTN
FT                 WERYASKVQFENITSDNVIESTEQLDRIAENITEKILQAYDASCPVKEELT
FT                 SRDVPWWNKTLNNLRKKSRQLFNHAKVSGQWDQYKKVLTMYNKEIRKSKRR
FT                 TWRSYCENMEKTPDVAKLQKVLSKDHSNGLGTVRKTNGKFTVDTQETLKIM
FT                 METHFPGSYLASSEDERGAHIDESCRPTGTISNSSIPNTIFTRSKVEWAIN
FT                 SFEPFKSPGKDGIFPALLQKGGEALIDYLTNIFKASLTFGHIPKIWTQVRV
FT                 VFIPKAGKKDKTNPKSFRPISLTSTMLKIMEKIIDEYIKSEYLRTIPLNRF
FT                 QFAYQPYKSTVTALHNLVTKIESTLDKKEIALVAFLDVEGAFDNTTYKSIK
FT                 KSMDKRNFDPSVRVWIMKMLKSREVSSELGESSITIRTTKGCPQGGVLSPL
FT                 LWSLVVDDILNKLVERGFEVIGFADDIAIIVRGKFDNIITDRMQSALNCTI
FT                 EWCQNEGLNINPSKTVLVPFTRKRKITLKSLIINGSILQYSSSVKYLGVIL
FT                 DDKLNWSLHLEQVISKATNALWVSKKTFGKKWGLKPKMIHWIYTVIVRPRI
FT                 VYASFVWWPKTNQITSQQKLAKFQRLVCMAITGAMHSTPSKALEAVLYKLP
FT                 LHQYVQMEAERSALRLRRTTIFLEGNLSGHLSILKDFRIDKTVQMIEDWME
FT                 KILNLDKPYEVINTNRQIWESGGPIISPGSIIFYTDGSKMNDSAGAGIIGP
FT                 GIHVSIPMGRWTTVFFAEVYAILECAYICLKRNYRHARICIFSDSQAALNA
FT                 LKCFTCQSKLVWECITILKQLAMKNQVHLYWVPGHCGIEGNEKADLLARQG
FT                 ASSQYVGPEPFCGISKCVTQLELKQWKDNMIQFNWKAIKNLRQSKLFITPN
FT                 KQITEKILNLNKKSLRIFIGLLTGHCPARYHLKKISRSQIDVCRFCGCEKE
FT                 TSQHLLCDCPALFASRKKYFNKGILNPSEIWLQNPNLVVKFILKVIPDWDN
FT                 SHHQITAVILNGNSPY"
XX
SQ   Sequence 6067 BP; 2142 A; 1107 C; 1281 G; 1537 T; 0 other;
     gtgctgagtg ctgagagtaa ggcagcttat agttggctat agaagctctt agttttctag        60
     aaaaataatt ctaaaagtga tccctttatg ggcaaagtta tcgggaaagc tagataaagt       120
     gccatagagc gttgtgcaag tggaagacag caagatagtg cagtgtatcg tgtgaaaatc       180
     aatgcgaaaa agtgcaattc ttgctggcat tatcctgcac tggggaaagt gaagtaaagg       240
     gttacaagta gtggagtaga agggggatac aacccaacag caacgggcgg cattgtttgt       300
     tgagtgccag tagtgacagt agtgcacata tagaaaggtc gtgtaggtgc tatcgagtca       360
     ctaccactgc atcacgtgaa gagtgtatct aagaatctct caaaacagtg cgcggtgtgt       420
     cagaaggcga atattaaaaa aaaggaaatt gttttgtata tatatatata tatttttttt       480
     ttcttctcaa tttggaaaat tattaacaaa aatctaaatt aaaaataatt cgtgttgtgc       540
     agcattatgg agtcgaagga agaatccatg gatactgtac ctaccgaaat catggaagtg       600
     gacgaaggaa agaaagaaga tgatcttcta caaagtgtct cagcggatga acttggggga       660
     gcgggatccg tctcgtcctc cattctgaac tccgatgatg aggacgacgg ggtgaatgtt       720
     accatcatag ctacacgcac tgatatgcag gaatatcagc aaaacgagca aagagaaatt       780
     ctaaagccaa aattgagtgg ggcaaaaaag aagcaattta aaaaactgtt gataagtggt       840
     catgggcggg aggaagcact ttcgatggtc cttgcaccat caaacgtgtc gaccccaaaa       900
     agaccacgaa acatcaacag cagtaccaac agtgatggaa aacctattcc caaaaaacag       960
     aagggactgc tcaatcacca gtccgtcaat aaacggatgg agaatattag gcaggatcag      1020
     ccgacaacaa tgagtggagt tcaacaacca acatacagtg aggtggctaa atgggtacgg      1080
     gtaggaatac ttccaacgga ctacccacaa acccaactga cgacggaaca gatggacatc      1140
     gtacaggggg ccattctaca aaaagttaca cagcaaagaa aagagtcctt caagccgaag      1200
     ttttccaact gttggcaaag aactgggcat ttggtaatta actgtcaaga caacgatacg      1260
     gcagattggt tatattcggt ggttcctgcg ctactcccat gggaaggcgc ggaactagcg      1320
     gtaatcgatg cggacgatat accaagattg gaggtgatga tcggcttttt cccccaaagt      1380
     gtaaacgacg acaatgacac tatccgaatt ttcattgaaa gtcaaaacga tggcttgagt      1440
     accgacaaat ggagaatcat tcaacgcaac gttctctacg agaaacatgt tgaatggttc      1500
     ttcactgttg atgaggcatc catgcagcat ttcaaagcat gtaatttcct catcaactac      1560
     aagttcgggc aaacaactct gcgaaaaaaa ggtatgtaca aatctggttc agatggaatg      1620
     gctaaatcga gtgacgatcc caaagggcaa gagctggtaa gtagcgtatg ttctgggaat      1680
     cttcatgtcc cggcgacatg cgcgacagac ggcaagttgc cggagttaaa gtcctctaaa      1740
     taccatcaac agaccaatca aaatactgga cttcctaagg accaaattcc tcaagggatc      1800
     ccagaagccc agaaccatcc agggacctcg aaatcctcga gttattttgg gcatccagtg      1860
     actgggaagt gctctgggca ttcaaaagac cagcagtact ccagaacaca tacggaccca      1920
     aattcctcag agggttcaaa ggaccggaat actcctgggc tagcgacgga caaaaatgaa      1980
     actgggccac caaagaacca gaactgtcct gggacttcaa agtaccatga cgtctctgag      2040
     ccttcaaggg atcggaactt ctctggggca aaaaaggacc ggaatatatc tggaccttcg      2100
     aaggatcgga ctatttctgg gccgccaaag gaccggaatg tgtctgagct ttcgaaggaa      2160
     cggaattgtt ctgggctatc aaaggaccgg aattcagcaa aatctaaaaa gaaacagaac      2220
     catctggatc attaaaagac catagacgtt ttttaaaatt gaatatatct aataaaagta      2280
     aaaacaaaat gaataacatc aaatttattc aaataaacct tcaccatgcc aaaggagcaa      2340
     ccggagtcct ttgtcaaaga ttcaagaaag aaaactttag cgtggcattg atacaagagc      2400
     cctgggctca taaaagccga gttcttggaa tcaatagtct gataggaaaa ctaatttatg      2460
     acgaaaatag ttcaaaaccg cgaacagcaa ttttaataaa agggggaatc aaattcgtac      2520
     ctataacaca attcattacc aaagatatag ttgtgattcg gttggagatt cctacatccc      2580
     gggggaaaac agaagcctat atagcttctg cttatttccc tggagatggg gatacagtac      2640
     ctccacccga actggcagat ttcgtaaatt actgtaaaat gcacaataaa tacttcataa      2700
     tcggatgcga tgcgaattcc catcacacaa tatggggaag caccaacatt aacaaaagag      2760
     gtgaagacct ttttgaatac atatcttcaa ataatatgga tttatgtaat aaaggagatc      2820
     aaccgacatt tgtaacaaaa gttagacaag aagtattgga cttaacaatg tgtagtcctg      2880
     tactttcaac aaacataaaa aactggcatg tttcagatta cgaatcatta tctgaccata      2940
     aacacattgt ttttgagtac attgctggtg cattaatcaa aatagctttc aagaatccta      3000
     ggaataccaa ctgggagcga tatgcgtcaa aagtgcaatt tgaaaatata acctcggata      3060
     acgtaatcga atctacagaa caactggaca gaattgcaga aaatataact gaaaaaatat      3120
     tacaggcata tgatgcaagc tgtccagtca aagaagaact aacaagcagg gatgttcctt      3180
     ggtggaataa aaccttaaac aatttaagga aaaaatctcg gcaacttttt aaccatgcga      3240
     aagtttctgg gcaatgggat caatacaaga aggtccttac gatgtacaat aaagaaatac      3300
     gaaaatcaaa aaggcgaacc tggaggtctt attgtgaaaa catggagaaa actccagatg      3360
     tagcgaaact gcaaaaagtg ctttctaaag accattcaaa tggtttggga actgtacgga      3420
     aaacaaacgg taaattcact gttgatacac aggaaactct taaaataatg atggagacgc      3480
     atttcccagg atcatattta gcgtcaagtg aagatgaacg gggtgctcat attgatgaga      3540
     gttgtaggcc aaccgggact ataagcaatt catccatacc taataccatc ttcacgcgat      3600
     ctaaagttga atgggcaata aactcctttg aaccgttcaa atcgcctggg aaggacggaa      3660
     tttttcctgc acttctacag aagggtggag aagcactgat tgattatcta acaaatattt      3720
     tcaaagctag tctaacgttt ggtcacatac caaagatatg gactcaagtt cgtgttgtct      3780
     ttattcctaa ggccggaaaa aaggacaaaa caaatccaaa atcttttaga ccgataagtc      3840
     ttacatctac catgcttaaa atcatggaaa agattataga tgaatatatt aaatcagaat      3900
     atttgcgcac aattcctctt aataggtttc aatttgctta tcaaccatat aaatctactg      3960
     tcacagcttt acacaatcta gttacaaaaa tagaaagtac tcttgacaaa aaagaaattg      4020
     ctctcgttgc atttcttgat gtggaaggtg cttttgataa tacgacttac aaatctataa      4080
     aaaaatcaat ggataaaaga aactttgacc ccagcgttag agtttggata atgaaaatgc      4140
     tgaaaagtag agaagtgtct tccgaattgg gggaatcatc gataacgata aggactacta      4200
     agggttgtcc tcaaggaggt gtattgtcgc ctttattatg gtcccttgtt gttgatgaca      4260
     ttctcaataa actagtagaa agaggcttcg aagttatagg atttgctgat gatatagcca      4320
     taatagtacg tggaaagttt gataatatca tcacagatag aatgcaatct gcactaaact      4380
     gcactattga gtggtgccaa aacgaagggc taaatataaa cccatcaaaa acagttttag      4440
     ttccatttac tcgtaaaagg aaaattacac tcaaaagctt gataattaat ggatccattt      4500
     tacaatattc atccagtgta aagtatctag gggtcattct agatgataaa ctaaactgga      4560
     gcttacactt agagcaggtc ataagtaaag ccacgaatgc tctctgggtg agtaagaaaa      4620
     catttggtaa aaaatgggga ctcaaaccta aaatgattca ttggatttac acggttattg      4680
     taagacccag aattgtttat gcctcatttg tttggtggcc taaaacaaat caaattacat      4740
     cccaacaaaa gttagcgaaa tttcaacgtt tggtctgtat ggctataaca ggagcaatgc      4800
     acagtacacc atcaaaagcc ttagaggcag ttctttataa gcttccatta catcaatacg      4860
     tgcaaatgga agctgaaagg agtgcgctaa ggctgcgaag aactaccatt tttctagaag      4920
     gcaatctttc tgggcatctt agtatactga aagattttcg tattgataaa acagtacaga      4980
     tgatcgaaga ctggatggaa aaaatcctga acctagataa accatatgaa gtgattaata      5040
     cgaatcgcca aatatgggaa tcaggagggc ctattatttc accaggatcg attatttttt      5100
     acacagatgg ttccaaaatg aatgatagcg ccggagctgg tattataggc ccggggattc      5160
     atgtttcaat acctatggga agatggacaa ccgtcttctt tgcagaagta tacgccatct      5220
     tagaatgtgc atatatatgt ttgaaaagaa actacagaca tgcaaggatt tgcatatttt      5280
     cagatagtca ggcggctctg aatgcattaa aatgtttcac atgccaatca aaattggttt      5340
     gggaatgtat aacaattctt aagcaattgg ctatgaaaaa ccaggtccat ctgtactggg      5400
     tgccaggcca ttgtgggatt gaaggaaacg agaaagccga tttacttgcc agacaaggcg      5460
     caagttctca gtatgtagga ccagaacctt tctgtggaat atctaaatgt gtaacacaat      5520
     tggaattaaa gcaatggaag gacaatatga ttcagtttaa ttggaaagct ataaaaaatt      5580
     taaggcaatc aaaactcttc ataactccaa acaaacaaat aacggaaaaa atcttgaatt      5640
     taaataaaaa atcactaaga atatttattg ggctgcttac gggacactgt ccggcaagat      5700
     atcatttgaa aaagataagt cgaagtcaaa ttgatgtctg tcggttttgt ggctgtgaaa      5760
     aagagacctc tcaacatctg ctttgtgact gtccagcatt atttgcaagt aggaaaaaat      5820
     atttcaacaa gggcattcta aatccttctg aaatttggtt acagaaccct aatctagtag      5880
     taaaatttat tttaaaggtc attccggatt gggataactc gcatcatcag ataacggcag      5940
     ttatcctgaa tggtaactct ccgtactgag cacgttgcga tagtaaacag gggtatacca      6000
     caatagatca attaatggtc gcagtggttc aaatcccaac aaaaaaaaaa aaaaaaaaaa      6060
     aaaaaaa                                                                6067
//
ID   LOA_Ele6C_AAe repbase;    DNA;    INV; 5744 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A LOA non-LTR retrotransposon from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element;
KW   LOA_Ele6C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5744
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1425-1425 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. The consensus is ~77% identical to
CC   LOA_Ele6 and LOA_Ele6B_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           240..1916
FT                 /product="LOA_Ele6C_AAe_1p"
FT                 /translation="MEPNTESMEIASDMETEEMPKEEDLLQSSSMDDIGGG
FT                 GSISSSILNSEDEEDGVNITIKEIRNDLQSNLQNPEINVRPKLSGAKKKRF
FT                 RKLLLGGHAREEALSMVLTPSNVPTPKRSRNMNNSSNSDGKPNPKKQKGLQ
FT                 VHHSVNNRMENIRQGATAIVPENQQSTYGEVAKWVRVGILPNTYPQIQLTT
FT                 EQMNLAQEAILEKVTVQRRESFKPKFTNCWQRTGHLVINCQDTETADWLDS
FT                 VVPTLCPWEGAELTVVDADDIPRLDVMIGFFPQSVNNDNDTIRIFIESQND
FT                 GLSTDKWRIIQRNTLYEKHVEWYFTVDEASMQHFRASNFLLNYKFGQTTLR
FT                 KKGMFKPDSNGTVTLRDDTKDEPESSVSTGNQQDHSVPGPSGIHGNPSKVE
FT                 SSKNHNQTQPDVNNHQGSKNNVFGHQTGLAEGQFLSEPPKDRNSSGPTKDH
FT                 SRSGSSKDQTISGHLKGQRSSELSKARSSVGPSKEQRSFGPSKEQSSFGPL
FT                 KDQSSFGTLKDQNHSGPHMNQNAYGLVRDQNTPGLRKNHNETEQKHKQKST
FT                 GPKKDQMNSKNV"
FT   CDS           1935..5648
FT                 /product="LOA_Ele6C_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MSSNRNHMQIDTNIKCIQINLHHAKGATGILCQRFMK
FT                 EKLSVAFIQEPWAHKNQVLGIPMQTGKIIFDEHSSRPRTALLLKGGLKYVP
FT                 LTQFITKDLVAVQMEIPTTRGKTEACIASAYFPGDVDTVPPPELAAFVRFC
FT                 KSNNKHFIVGCDANSHHTVWGSTNINKRGEDLFEYISSNNIDLCNEGNQPT
FT                 FTTKNRQEVLDITMCSSMISTNIKNWRVSDEESLSDHKHIVFEYRASKTIK
FT                 VTYRNPRNTNWEKYESMLNLSNNISLNDNIETTEQLDKIAENITGKIIRAY
FT                 DTSCPIKEEFSNRDVPWWNKSLENLKKKSRQLFNRAKVSGQWDQYKKALTT
FT                 YNKEIRKSRRKTWKFYCENIEKTPDVAKLQKVLSKDHSNGLGNLKKINGSF
FT                 TVDTKETLEIMMKSHFPGSSLVMSDDTECDKVGETSRPNRTTGNNLDLPDT
FT                 IFTRSKVEWAVNSFEPFKSPGRDGVFPALLQKGGQLLLDSLTNIFKTSLCL
FT                 GHIPKIWTQVRVVFIPKAGKKDKTNPKSFRPISLTSTILKIMEKIIDEYIK
FT                 SKYLQTNPISKYQFAYQPNKSTVTALNELVTKIESTLHRKEIALMAFLDVE
FT                 GAFDNASYKSIENCMVKRQFDRCIKIWIMKMLNDREVSAELGESSITIKTT
FT                 KGCPQGGVLSPLLWSLVVDDLLIKLVEKGFEVIGFADDVVIIVRGKFDNII
FT                 TDRMQSALNCTWQWCQHEGLNINPSKTVLVPFTRRRKITLKNLTINGCILQ
FT                 YSSNVKYLGVILDSTLNWNLHLEQVILKATNALWVSKKTFGKKWGLKPKMI
FT                 NWIYTVIVRPRIVYASLVWWTKTKQHMAQRKLGKLQRLACMAITGAMHSTP
FT                 SKALEAALYKLPLHQYIQKEAEKSALRLKRTHTFLEGNLFGHLSILKDFPI
FT                 NPLVVMNEDWMENRMNLDIPYNVVETNRQVWESGGPNISPGSIIFYTDGSK
FT                 MNDKTGAGITGPGIDISIPMGRWTTVFLAEIYAILECASLCLRRKYRYARI
FT                 CIFSDSQAALKALKSFTSQSKLVWECITLLKQLSVKNQVNLYWVPGHCGIE
FT                 GNEKADLLARRGSSVQFIGPEPFCGVSKCLIQMELKQWEDQMIQSNWIATE
FT                 TLRQSKLFITPNKNVTEKLLSLNKKSLSILIGLLTGHCPTRYHLNKINRCQ
FT                 TGVCRFCDCEIETSQHLLCDCPALYVRRRQYFNKGILSPFEIWLENPNLVI
FT                 GFILRIIPDWSTSHHQSTAFTPNGNSSS"
XX
SQ   Sequence 5744 BP; 2079 A; 1050 C; 1165 G; 1450 T; 0 other;
     tctatcgcat aacgagagaa agaaagttgc ctgagattgg ttggtgctac cgggccacta        60
     ccactcttgt gtgtgaaaga agatcccgaa gatcactcaa tacttgtgcg cggtgtgcta       120
     gaagagaaat attcaaaaaa aaaaacggtt gagttcaaaa caaaatcaaa aaataatttc       180
     tttttttttt tttttttaaa cataatccaa aaattaaatt aaaggtattg ttcagcgtga       240
     tggagccaaa tactgaatca atggaaattg catcagatat ggaaacggaa gaaatgccta       300
     aagaagaaga tctactacaa agttcctcaa tggatgatat tggcggtgga ggatctatct       360
     cgtcctctat ccttaactct gaggatgagg aggatggagt aaatatcacc attaaggaga       420
     tacggaatga tctacagagt aatttacaaa atccagaaat aaacgtaaga ccaaagttga       480
     gcggagcaaa gaagaagcgt ttcagaaaac tactgttggg tggacatgca cgggaggaag       540
     cactttcgat ggttttaaca ccatctaacg tgcccacacc gaagaggtct cgaaacatga       600
     acaacagtag caacagtgac gggaaaccca atcctaaaaa acaaaaagga ttgcaggttc       660
     atcactccgt caataatcga atggaaaata tcaggcaagg agcaacagcg attgtacctg       720
     agaatcaaca gtcgacatat ggagaagtgg ccaaatgggt tagagtagga atactaccaa       780
     acacctatcc acaaatacag ctcacaacgg aacagatgaa tttggcacag gaggccattc       840
     tcgaaaaagt aacggttcaa agaagagagt ccttcaagcc gaagttcact aactgctggc       900
     agcgaacagg acacttagtg ataaactgtc aagacacgga aacagcggat tggctcgact       960
     ctgtggttcc tacgctctgc ccatgggaag gcgctgaatt aacagtagtc gatgcagatg      1020
     atatcccaag gttagacgtg atgataggct tttttcctca aagtgtgaac aacgacaacg      1080
     acaccatccg gatcttcata gagagtcaaa acgacggcct gagtaccgat aaatggagga      1140
     tcattcaacg aaacactctt tatgagaaac acgttgaatg gtacttcact gttgacgagg      1200
     cgtccatgca acatttcaga gccagtaatt ttcttcttaa ctacaagttt gggcaaacca      1260
     ctcttcggaa aaaaggtatg ttcaaacctg attcaaatgg gactgttact ttgagagatg      1320
     ataccaaaga cgaaccggaa agctccgtaa gtactgggaa ccaacaagac catagtgtcc      1380
     cgggaccaag cggaatacac gggaatccgt caaaggtaga atcctcaaag aatcataacc      1440
     agacacaacc agatgtaaac aatcaccaag ggtcaaaaaa caatgttttt gggcatcaaa      1500
     ctgggcttgc agagggccag tttctctctg agcctccaaa ggaccgaaac tcttctgggc      1560
     cgacaaagga ccatagcagg tctggatcgt caaaagacca gactatctct ggccatctaa      1620
     agggacagag aagctctgag ctatcaaagg ctcggagcag cgttgggccg tcgaaggaac      1680
     agcgcagctt tgggccgtca aaggaacaga gtagctttgg gccgttgaag gaccagagca      1740
     gttttgggac tctaaaagac caaaatcatt ctgggcctca tatgaaccag aatgcttatg      1800
     ggctggtaag ggatcaaaat acacctgggc ttcgtaagaa ccataatgaa actgaacaaa      1860
     aacacaaaca aaaatccact gggcccaaaa aggaccagat gaattcaaaa aacgtctaac      1920
     tatgagagtt taaaatgtct tctaatagaa atcatatgca aatagataca aacataaaat      1980
     gtatacaaat aaaccttcat cacgctaagg gtgcaactgg aatcctctgt cagaggttta      2040
     tgaaagaaaa attaagcgta gcatttatac aagaaccttg ggctcataaa aaccaagttc      2100
     ttggaattcc tatgcaaaca ggtaaaatta tttttgatga acacagttca agaccgcgca      2160
     cagcactatt acttaaaggg ggacttaaat acgtaccatt gacacaattt atcaccaaag      2220
     atttagttgc agttcaaatg gagattccca caacccgggg aaaaactgaa gcttgtatag      2280
     cttctgcata ttttcctggg gatgtggaca cagtacctcc tcctgaattg gcagctttcg      2340
     taagattttg taagagtaat aataaacatt ttattgtcgg ttgcgatgct aattcccatc      2400
     acacagtttg gggaagcacc aacataaata aacgaggcga agaccttttt gaatacatat      2460
     cttcgaacaa catcgattta tgtaacgaag gaaatcagcc tacatttaca acaaaaaaca      2520
     gacaagaagt attggatata actatgtgta gttcaatgat ttctacaaat ataaagaatt      2580
     ggcgagtttc agatgaagaa tctttatctg accacaaaca catagtgttt gagtacagag      2640
     ccagcaaaac aatcaaagtg acttacagaa atcctaggaa taccaactgg gaaaaatatg      2700
     aatcaatgtt aaatttaagt aataatatct cattgaatga caatatagag acaacagaac      2760
     aattagacaa aattgcagaa aatataactg gaaaaattat tcgggcgtat gatactagtt      2820
     gtccaataaa agaagaattc tctaatagag atgttccttg gtggaataaa tctttagaaa      2880
     acctaaagaa aaaatctcgg cagcttttca accgcgcaaa agtttctggg caatgggacc      2940
     aatacaaaaa ggcccttaca acttacaaca aagaaataag aaaatcccgt agaaaaacct      3000
     ggaagtttta ttgtgaaaac atagaaaaaa ctccggatgt agcaaaatta cagaaggttc      3060
     tttccaaaga ccattcaaat gggctgggaa atttgaaaaa aataaacggg agttttaccg      3120
     ttgatacaaa agaaacactt gaaataatga tgaaaagtca ttttccagga tcaagtttag      3180
     taatgagtga tgatacagaa tgtgataaag ttggagaaac ctctaggcct aataggacta      3240
     ccggcaacaa cttagatcta ccggatacta tctttactcg atctaaagtt gagtgggcag      3300
     tgaattcttt cgaacctttc aagtctccag gaagagatgg tgttttccct gcacttctac      3360
     agaagggtgg acaattactg cttgactctc tcacaaatat ctttaaaact agcctatgtc      3420
     ttggccatat accaaaaata tggactcaag ttcgggtcgt ctttattcct aaagcaggga      3480
     aaaaagacaa aacaaatcca aaatcgttta gaccaattag tctaacatct acaattctta      3540
     aaatcatgga aaagataata gacgaataca taaagtcaaa atacttacaa acaaatccta      3600
     tcagtaaata tcaatttgct tatcaaccca ataagtctac agtcacagct cttaatgaac      3660
     tggttacaaa aatagaatcc acgcttcaca ggaaagaaat agctcttatg gcatttctgg      3720
     atgttgaagg tgcgtttgat aatgcgtctt ataaatctat tgaaaattgt atggtgaaaa      3780
     ggcaattcga tcgttgtatc aaaatatgga ttatgaaaat gttgaatgat agagaagtat      3840
     ctgctgaatt gggagaatct tcaataacaa taaaaaccac taagggatgt cctcaaggag      3900
     gtgtattatc ccctttgttg tggtcgcttg ttgttgatga tctcctcatt aaactagtag      3960
     aaaaaggctt cgaagttatt gggtttgcag atgatgtggt aataatagtt cgtggaaagt      4020
     ttgataatat aatcactgac agaatgcaat cagcattgaa ctgtacttgg cagtggtgtc      4080
     aacatgaagg gttgaacatt aacccatcaa aaacagtttt ggtgccgttt actcgcagaa      4140
     gaaagattac tttaaaaaat ttgactataa acggatgtat tttacaatat tcttccaatg      4200
     ttaaatatct aggagtaata ctagatagta ctctcaattg gaacttacac ttagagcagg      4260
     taatactcaa agccacaaat gctctatggg tgagtaaaaa aacttttggt aaaaaatggg      4320
     gactgaaacc aaaaatgatt aattggatct atacggttat agtacgaccc agaatagttt      4380
     atgcttcact agtttggtgg acaaaaacaa aacaacatat ggcccagaga aagcttggaa      4440
     agttgcaacg cttagcctgc atggccataa caggagcaat gcacagtaca ccatcaaaag      4500
     ccttggaagc agctctttat aaacttccgc tacatcaata tatacagaag gaagctgaaa      4560
     agagtgctct aaggctgaaa agaactcata catttttaga aggcaatctt ttcgggcatc      4620
     tcagtatact gaaagatttt ccaataaatc cattggtagt aatgaacgaa gactggatgg      4680
     aaaataggat gaacttagat ataccatata acgtggttga aacaaaccgc caagtatggg      4740
     aatcaggggg tccgaatatc tcaccaggat cgataatttt ctacactgat ggctcaaaaa      4800
     tgaatgataa aaccggggct ggaattacag gaccaggtat tgatatttca ataccaatgg      4860
     gaagatggac cactgttttc cttgcagaaa tttatgccat tctagaatgt gcatctttgt      4920
     gtctgagaag gaaatacagg tatgcacgga tttgcatatt ttcagatagc caagcggcgc      4980
     tgaaagcttt aaaatcattc acaagccaat caaaactggt atgggaatgc ataacactgc      5040
     taaagcaatt gtccgttaag aaccaggtta atttatactg ggtaccaggc cattgtggaa      5100
     ttgaaggtaa tgaaaaagcg gatttacttg caaggagagg gtcaagtgtc cagttcatag      5160
     gaccagaacc cttctgcggt gtatccaaat gtttaataca aatggaattg aaacaatggg      5220
     aggatcaaat gatacagtca aactggattg caacagaaac cttaaggcaa tcaaaactgt      5280
     tcataactcc aaataaaaac gttacggaaa aacttttaag tttaaacaaa aaatctttaa      5340
     gcatacttat tggacttctc acaggacatt gtccgacaag atatcatttg aataaaatca      5400
     atcgatgtca aactggtgtc tgtcggtttt gtgactgtga aatagagacc tcacaacatt      5460
     tgctctgtga ctgtccagcg ttatatgtac gtagaagaca atatttcaat aagggcattt      5520
     taagcccttt tgaaatttgg ttagaaaatc ccaatctggt tattggtttc attctaagaa      5580
     tcataccgga ttggagtact tcgcatcatc agtcaacggc atttacccca aatggtaatt      5640
     cgtcgtcctg aaagaatgca aattaaatag gggtatacca caatagatca aactcatggt      5700
     cgcagtggtt taaatcccaa caccaaaaaa aaaaaaaaaa aaaa                       5744
//
ID   LOA_Ele7    repbase;    DNA;    INV; 5878 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A LOA clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; Lian;
KW   LOA_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5878
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5878
RA   Kojima K.K. and Jurka J.;
RT   "LOA clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 12 sequences with >92% identity, and ~99% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           318..1970
FT                 /product="LOA_Ele7_1p"
FT                 /translation="MSDIGEKQLMEIDVEDVLXSSSVDDVPSCSSSILDNP
FT                 VGDDGYEDDGDFEDGINVTILSSTANIVHDTSAVDKTVLGSSAGKQPVLPG
FT                 DQQRTKLNGAARKRYKRLVAEGIDPEEAYTLSRVPLQTPNSEKRSRNADLS
FT                 GSTSSGENPRKKQNVRPLLEPRTGSNHXSLGKFSVQGRLQINSNVCSGRNE
FT                 TIQSQNKASYSEVVNYVRVGIVPKDYPNVELTSAQLLATRKAILSKVAQQR
FT                 KEKIXPKFGQCLLRTGHLILVCKNQETAGWLKSIASTISVVEDVELTALDE
FT                 KKIPRPEIIIGFFPVSAEDSTDDILELLESQNEGLNTDEWRIKERNIINQL
FT                 HVELIFTVDGASLDAIKKCEFTLDYKFGTAPLRRKIPPKIKMPNQGVNNDL
FT                 VSPSDNLNNRRVLEEQQTTLIGSGVIRQTATPIENLKTTGDSSSASNREIQ
FT                 NMPGPSGIRDASFKGARPKQILEGTSSGLVRKNDTAPQSPGSNGTMESKRN
FT                 VKKTKILPVKDKNPLHKNKYIAKYMKNLGDRVTNTEGGKPPRESDTTMKHE
FT                 NGQH"
FT   CDS           2099..5749
FT                 /product="LOA_Ele7_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MRREQQLYFKKNFVHNKMDIALIQEPWAYDRKVLGIP
FT                 TSAGQLIYDENQIVPRAAILISNRMKFLPITQFISKDIAVVLMEVPTTRGI
FT                 AEMYVASAYFPGDLEAIPPPDVVNFVSYCKKNNKPFILGCDANAHHIVWSS
FT                 SDINYRGEYLLEYIITNNIDICNQGCEPTFITSTRKEVLDLTLCSTNISEN
FT                 VKNWHVSNETSLSDHRHILFQYQTNEIFTNEFRNPRKTNWDLYYQNILNES
FT                 HISDEKFNSITELEKASVQVSNLMQHAFQASCPITVRSTSRDVTWWNDNLE
FT                 ALRKKTRKLFNRAKRTMKWEXYKIALTDYNKEIRRSKRMDWRRTCESIENT
FT                 PVVARLQKVLSKDHVNGLGTVRKSNDCLTSNGLETLEVMMQTHFPCSTVIN
FT                 YDENATEDNTSNELSRMTSLGEIHDSKDNLDLLPILNMAAQKADEIFTKNK
FT                 VEWAINSFDPFKSPGKDGIYPAFLQKSNGVLTSALSNMFKASLVFGYIPKS
FT                 WRQVRVVFIPKANKKDKTSPKSFRPISLSSIMLKIMEKLIDHYIKTAYLKQ
FT                 NPISIHQFAYQSGKSTTTALHALVSKIEKTFEAKEVLLATFLDIEGAFDNA
FT                 SHKSMARAMLKHGFDICIVKWISEMLSKREITADLGSVSISVKAVKGCPQG
FT                 GVLSPLLWSLVVDELLTNLESQGFEIIGFADDIVIIVRGKYDSVITNRMQR
FT                 ALDYTIQWCITEGLDINPQKTHIIPFTKRRKLIISGLHMKGTLMTLSTEVK
FT                 YLGIILDCKLNWNSHLKQIIDKATNALWLSKRTFGNKWGLRPIMIHWIYTT
FT                 IIRPRITYASLVWWTKTKEKCAIQKLAKLQRLATMCTTGAMRSAPTKALDA
FT                 ILNLLPLHQFIQLEAEKSALRFQQWKPLLSGDIKGHLSILNDIKINPLVTV
FT                 NTDWMEIQFNFNRMFNVVESDRTVWTMGGPQIRSGSIIFYTDGSKQNGQVG
FT                 AGVTGPGVNLSVSMGRWPTVFQAEIQAILECASICLKRKYKHSNICIFSDS
FT                 QAALSALKSYTCTSKLVWECFLLLQQLCINNTVNLYWVPGHCGIDGNEKAD
FT                 ELARIGSTEKFLGPEPFCGVSTCSIKMELRNWKQSMVITNWNKTAVARQSK
FT                 QFITPHASNTQKLLFLSKKDLCTYTGLITGHCSAKYHLRLMGKVEDDICRF
FT                 CQESCETSEHLLCSCDALFQRRVKFFDKGDIQPFEIWSLPPGKVVRFIRHI
FT                 IPNWDNT"
XX
SQ   Sequence 5878 BP; 2038 A; 1078 C; 1142 G; 1611 T; 9 other;
     actsawcaat aggttcataa gtgttatacg tttactacat atacgtccat atctttctct        60
     gttaacttgc atgcaagatt tmtatatgtt gtggtagaaa taccatcaac sgagtatcaa       120
     ctgaagtcgt tgtgaaccat ttgcaatgac tcaaccgttc atactcttcc tcagaacaca       180
     atttgttctg cggatatgaa tgtttttctt gtctcgtaca agtggtagta cagtggcaga       240
     cccgactgca ctataatata cgattgataa taaatcccac cgttcgtact ttaatcttca       300
     cgatttcagc cacaaatatg agcgacattg gggagaaaca gcttatggag attgatgtag       360
     aagatgtttt ggwcagcagt tcggtggatg atgttccatc ctgctcttcg tctattttgg       420
     ataatccggt tggcgatgat ggttacgaag acgacggcga cttcgaagat ggcattaatg       480
     tcaccatact gtcatcaaca gccaacatag tgcatgatac ttctgcagtc gacaagactg       540
     tgctgggtag ctctgcagga aaacaaccag tgttaccagg tgaccagcag agaactaagt       600
     taaacggcgc tgctaggaaa cgttataagc gattggttgc cgagggaatc gatccagaag       660
     aagcttacac cctttctcgt gttccactac agacgcctaa ttccgagaaa agatctcgaa       720
     atgctgatct tagtggttca actagcagtg gtgaaaatcc tcgcaaaaaa caaaatgtac       780
     gtccgcttct agagccaaga acaggatcaa accaccmgtc attggggaag ttctcggttc       840
     aagggcgtct tcaaattaat tcaaacgtat gctctggacg aaacgaaacg atacagagtc       900
     aaaataaagc ttcttatagc gaggttgtga actacgttag agtaggaatt gttccgaaag       960
     actaccctaa cgtggagctt acatctgcac aattacttgc aacacgcaaa gctattcttt      1020
     caaaagttgc acaacaacgg aaagaaaaaa ttwaaccaaa attcggtcaa tgtttgctta      1080
     ggacggggca tctgattctt gtctgtaaaa accaggagac agctggctgg ctaaaaagca      1140
     tagcctctac aatwtccgtc gttgaagatg tagagcttac tgctttagac gagaaaaaga      1200
     ttccacgtcc tgagattata attggatttt tcccagtgag tgcagaagac agtacagatg      1260
     atattctgga actcctggag agtcaaaatg aaggtctgaa tacggatgaa tggcgaatca      1320
     aagagcgcaa catcattaat cagttgcatg ttgagttgat ttttaccgtg gatggagcct      1380
     cgctggacgc aatcaaaaag tgtgaattca ctcttgatta caagttcgga acagctccac      1440
     tccgtcgtaa aatccctcca aaaataaaaa tgccaaacca aggagttaat aacgacttgg      1500
     tttcaccatc cgataatttg aataatcgca gagtactaga ggagcagcaa actactctga      1560
     ttggttctgg agttattaga cagacggcga ctccaattga aaacctgaag actactggtg      1620
     attcaagcag tgcttcaaac cgcgaaatcc aaaatatgcc aggacctagt gggattaggg      1680
     atgcaagctt taaaggcgca cgtcccaaac aaatccttga aggaactagc agcggactag      1740
     tgcgaaaaaa tgatactgca ccacaatcac caggatctaa tggtacaatg gagtcaaaac      1800
     gaaatgtcaa aaaaacgaaa atacttcccg ttaaggataa aaatccttta cacaaaaaca      1860
     agtacattgc taaatacatg aaaaatctgg gtgatcgcgt aaccaacaca gagggaggaa      1920
     aaccacctcg ggaaagcgat actacaatga aacatgaaaa tggccaacat taacgtaaat      1980
     aaatcatgta atatccaaag cagcaaccaa aacaatcata gttctatcac aaataccaac      2040
     acaaataata ttaatagaca gaataggttc ataaaattca ttcagataaa tttacatcat      2100
     gcgaagggag caacagctgt acttcaaaaa aaactttgtg cataataaaa tggatatcgc      2160
     gctcatacag gaaccgtggg cttatgacag aaaagtgtta ggaataccga cctctgctgg      2220
     tcaacttatt tatgatgaaa atcaaatagt tccaagagca gctattttaa taagcaaccg      2280
     aatgaagttt ttaccaatta cgcagttcat tagtaaagat attgctgttg ttttgatgga      2340
     ggttccaacc acgcgaggaa tagcagaaat gtatgttgca tctgcgtatt ttcctggaga      2400
     tttggaagcg attcctcctc ctgatgttgt caatttcgtt tcatattgta agaaaaacaa      2460
     taaaccattt attttaggat gtgacgcaaa cgctcaccac atagtatgga gcagctctga      2520
     catcaactat agaggtgagt atctcttaga atatataata actaataata ttgatatttg      2580
     taatcaagga tgtgaaccga ccttcattac ttcaaccaga aaggaagtgt tggatctgac      2640
     tctatgtagt actaacatat cggaaaatgt taagaattgg catgtatcta atgaaacatc      2700
     tctgtctgat cacagacata ttttatttca gtatcaaaca aatgaaatat tcacaaatga      2760
     atttcgaaat ccccggaaga caaactggga tttatattac caaaatattc taaatgaatc      2820
     tcacatttct gatgaaaaat ttaactccat aacagagcta gaaaaagctt ctgtacaagt      2880
     atcaaattta atgcagcatg cttttcaagc aagctgtcca attactgtac gttctactag      2940
     tagagatgtg acgtggtgga atgacaactt agaagcatta aggaaaaaaa ctagaaagtt      3000
     attcaataga gcaaaaagaa ccatgaagtg ggaaamttat aaaattgctc taacagatta      3060
     taataaagag ataagaagat caaaacgaat ggactggagg cgtacatgtg aaagcattga      3120
     gaacactcct gttgtcgcaa gactacaaaa agtcctttca aaagatcatg ttaatggctt      3180
     aggaacggtt agaaaaagta acgactgcct tacttctaat ggacttgaaa ctttagaagt      3240
     aatgatgcag acgcactttc cttgttctac agttataaat tacgatgaaa atgctacaga      3300
     agacaatact agtaacgaat tatctaggat gacttctctg ggcgaaattc atgatagtaa      3360
     ggataactta gacttactac caatcttaaa tatggctgct caaaaagctg atgaaatttt      3420
     tacaaaaaac aaagtagaat gggccattaa ctcattcgat ccattcaaat ctcctggcaa      3480
     ggatggaata tatcctgcat ttttacaaaa aagcaatgga gtactgactt cagctctttc      3540
     gaatatgttt aaagcaagtc tagttttcgg ttatattcca aagtcatggc gtcaagtgcg      3600
     tgttgtgttt attccgaagg ctaacaaaaa agataaaact tctccaaaat cgttcagacc      3660
     cataagtcta tcatcaataa tgctgaaaat tatggaaaag cttattgatc actacattaa      3720
     aacagcttac ttaaaacaaa atcctataag cattcatcag tttgcttatc aatctggaaa      3780
     atctactaca actgcgttac acgcacttgt ttcaaaaata gaaaaaacat ttgaagcaaa      3840
     ggaagttttg cttgcaactt ttcttgatat agaaggagct tttgataatg catcacataa      3900
     atccatggcg agggcaatgt taaaacatgg ttttgacata tgcatcgtaa aatggattag      3960
     tgaaatgtta tcaaaacgcg aaataacagc cgacctcggt agcgtatcta tatccgtaaa      4020
     agctgtaaag gggtgtccac aaggaggcgt attatcgcct cttctgtggt cgttagtggt      4080
     agatgaacta ctgacaaacc tagaatcaca aggattcgaa ataataggat ttgctgatga      4140
     tattgttata atagtccgag gtaaatacga ttctgtcatc accaacagaa tgcagcgagc      4200
     cttagactac acgattcaat ggtgtattac agaaggatta gacataaatc ctcaaaaaac      4260
     gcatattatt ccatttacca aaagaagaaa attaataatt tctggacttc atatgaaagg      4320
     aactttaatg acactttcta cagaagttaa gtacctagga attattttag attgtaaatt      4380
     aaactggaat tcacacctga aacaaatcat agataaagca acaaatgcgc tatggttaag      4440
     taaacgtact tttggtaata aatggggtct gaggccgatc atgattcact ggatatatac      4500
     gaccatcatt agacccagaa taacatatgc ttctttagtg tggtggacca aaactaagga      4560
     aaaatgcgcc atacagaagt tagcaaaact tcaaagacta gcaacaatgt gtactacagg      4620
     tgccatgcgc agcgcaccca caaaagcttt agatgcgatt ttaaatcttc ttccactaca      4680
     tcagttcatt caattagaag ccgaaaaaag tgctcttcga tttcaacaat ggaaacctct      4740
     tcttagtggt gacatcaaag gacatttaag catcttaaat gatatcaaaa ttaatccatt      4800
     agttacagtc aacacagact ggatggaaat acagttcaat ttcaaccgta tgttcaatgt      4860
     ggtagaatca gatcgtactg tttggaccat gggaggacca caaattcgat caggatctat      4920
     cattttttat accgatggtt caaaacaaaa tggtcaagta ggagctggtg taacaggccc      4980
     tggtgttaac ctttcagttt caatgggtag atggccaacc gtcttccagg cagaaataca      5040
     agcgattttg gaatgtgctt ctatttgctt aaaaaggaaa tataaacatt ctaacatatg      5100
     tatattctct gatagtcagg cagctttgtc tgctttgaaa tcgtatacgt gcacgtcaaa      5160
     acttgtatgg gaatgcttcc tcttgctcca acaactttgt attaataata cggtaaatct      5220
     ttactgggtt cctggacatt gtggaatcga tggcaatgaa aaggctgatg aattagccag      5280
     gattggatca accgaaaaat ttctaggtcc agagccattt tgtggagttt caacatgctc      5340
     cataaaaatg gaactaagga actggaaaca gtcgatggtg attacaaact ggaataaaac      5400
     tgctgtggct cgacagtcaa aacagttcat aacgccgcat gcttcgaata cacaaaagtt      5460
     attatttttg tctaaaaaag acctgtgcac atacacagga ctgattacag ggcattgttc      5520
     agccaaatat cacctaagac tgatgggaaa ggttgaagat gatatttgtc gtttttgtca      5580
     agagagttgt gaaacctctg aacatttatt atgtagttgt gatgctcttt ttcaaagaag      5640
     agtaaagttt tttgacaagg gagatataca gccctttgaa atatggtctc tgcctcccgg      5700
     taaggttgtg cgtttcatac gtcacattat acctaattgg gataatacct aagtcatgcg      5760
     ctgataatta cttttatagt aatttatcac tttgacaagg tacattaaaa agggttgtgt      5820
     atcacaaaag atcaatcagt ggtcgcagtg ataatatacc caacaaaaaa aaaaaaaa        5878
//
ID   Loner_Ele1  repbase;    DNA;    INV; 6094 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Loner non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Loner;
KW   Loner_Ele1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6094
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6094
RA   Kojima K.K. and Jurka J.;
RT   "Loner non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >98% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           675..2033
FT                 /product="Loner_Ele1_1p"
FT                 /translation="MDESDGGDTPPRDLVARTRFYQPSSAGPWVVYFRRKK
FT                 KILNVLSISRELTRKYPGTVIHQVKESKLRVTAPSYKAANEIAQHEAFTVE
FT                 YCVYVPAREVEVEGKIIDASLTCEDIKTGKGVFENRSIPDVAILDCKQLQS
FT                 VSMEGNKKVFSPSASFRVTFPGSVLPKFVCIDSAFYPVRLYVPKVFNCTNC
FT                 KQLGHSASYCDNKPRCGKCNQAHLEDACTQEAEKCSYCREELHDLQKCPAY
FT                 KRRIRNESRSIVKRSKKTYAEMVKSLNPSAKESSSAIPVGNSFQELSSDEA
FT                 NDDETDGGDSSEVHAPGKRKSQSSPGLRRKVMKSSLKSLPNSKGGGANLKL
FT                 PKKQVFDASVPCCSKDLPPPPPPIKYTSKRSSRQDSKKKATEVPRSSSKTP
FT                 GAKRGLITFTALVDRICNALGVSDSFRGILDLFLPAIEEYLRELTISWPLL
FT                 ASIISFDG"
FT   CDS           2029..5709
FT                 /product="Loner_Ele1_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDNSSSEVQDMITVLQWNCHSLKPKLDTFKFLLHNSD
FT                 CDIFALCETWLSSEDDLNFYDFNIIRQDRDDNYGGVLLGIKKCHSFYRIPI
FT                 PTHPGIEIVACQISVKGKDLCVASVYIPPRVSINRRHLWNAVSMLSSPVLI
FT                 LGDMNSHGTGWGESYDDYRAAIFYDLCDDFNLNILNTGEVTRISSDGKESR
FT                 LDLSLGSSSLSFDCMWKVIDDPHGSDHLPIITSIRNNFERSEQSIQVPFDL
FT                 TRNIDWQKFASAVTFGIESFNTLPPLDEYRFLTELIYKSALESQKQRVPSA
FT                 SFKRRPATPGWDDECTQLYREKSNAFKAFRRYGTSELYLEYSKLEKRLKNL
FT                 IKAKKRSYWRRFIDGLSRETSMTTLWRVARNMRNRSSSNESDEYSNRWIFN
FT                 FAKKVCPDSVPAQPPSWETQRDDALDRPFTMLEFSMALLSSNNSSPGRDMI
FT                 KFNLLKNLPDIAKRRLLDLFNLFMEHNIVPPEWRQVKVIAIQKPGKPASDH
FT                 NSYRPIAMLSCLRKLLEKMILSRLDHWVESNNMLSSTQFGFRKGKGTNDCL
FT                 ALLSSDIQLAFADKEQLASVFLDIKGAFDSVSIEILSESLHNSGLPGILNN
FT                 FLYNLLSEKHMSFTLGQLTTSRISYMGLPQGSCLSPLLYNFYVKDIDNCLE
FT                 EPCTLRQLADDAVVSMKGPRAEILQRPLQNSLDNLSTWARNLGIEFAPQKT
FT                 QLVVFSRKRNPAQLKLKLLGTDIDQSLTSKYLGVWFDSKGTWRTHIRYLTE
FT                 KCQQRINFLRTITGTWWGAHPEDLIKLYKTTILSVLEYGSFCFLSAANCHL
FT                 IKLERIQYRCLRIALGCMHSTHNASLEVLAGVLPLQNRFWELSLRILIKCG
FT                 VSNTLVIENFEELLKLNTQSKFMRVYLYYMSSDISLPCYNPPRVRFTNDSS
FT                 SVEYDLSMKQAIHGIPDQLRCITIPRIFNAKYQNVDSYRRYFTDGSRINGS
FT                 TGFGVFNENSSAFRKLQEPCTVYVAELAAINFALGMISNMPADHFFIFSDS
FT                 LSSIEALRSMKPVKHASYFLTKIREQMCALVERSYKITFVWVPSHCLIYGN
FT                 EKADSLAKVGAEEGEIYDRRISHDELFHLVRQSSLHGWQSDWLNDQLGRWL
FT                 HSIIPRVSLRAWWKGWDVSRDFIRVMSRLMSNHYSLDAHLHRINLALSNIC
FT                 NRCGSGYDDIDHVVWQCPDMDASRAQLMDTLAARGRQPYVSVRDVLGSRDL
FT                 VYMLSIYDYLRLCCIKV"
XX
SQ   Sequence 6094 BP; 1694 A; 1361 C; 1289 G; 1750 T; 0 other;
     tcattccttg cttagcgctt gaacgagtcg gtcgacagga tcccggtctc atcgtacggc        60
     actttttgca gagttcattt aggccttttt ccccaccgcc cgcgtgggtt tttggtttaa       120
     ttagtgagtt aaacaagttt cagttttgtg caaagtgagt gcttagacga ttgcgctttg       180
     cgaaggaagc gaactagtga aactagtatc gttccaccgc aataaaatca tcgcccatca       240
     tcaattatcg gtgattgatt tttctcccgc accgagaaca acaacaaggc agaaggccga       300
     cccggtcggt ctactaccta cggcgcgtgg acgttctcct gctgtagaac ggataagtat       360
     acattatcta ttgaattgct ttcgcatctc cgaacaacag tgttgagttc aaggttgttt       420
     ttcgctcctc ctctgtctct ctcccggtgc aattttgccc gtatagggga gttgggtaca       480
     aaatagccca ctgattggtt aatttttttt cttttttttt ttttgtgaat ttgatttacc       540
     catttagggg aggtgtgtac aaaatagtcc actgattaat aatttttttt ttacacatat       600
     tttttttgtt tttgtttttt ttttttatta ttattttttt ttcttcattt ggttgcggtt       660
     aagctttttt ccgcatggat gaatcggatg gaggcgatac gcctcctaga gatctcgttg       720
     ctcgaacgcg gttctatcaa ccgtcttcgg ctgggccttg ggttgtctat ttccggcgca       780
     aaaagaagat tttgaacgtg ctctcgattt ctcgggagct gacgcgtaaa tatcctggga       840
     ccgttattca ccaagtgaaa gaatccaagc tgcgtgtaac tgcacctagt tacaaagcag       900
     cgaatgaaat tgctcagcat gaggctttta ctgtggaata ttgcgtctat gtgccggcac       960
     gagaagtcga ggtggaaggg aaaattatcg acgcgagtct aacatgcgaa gacattaaga      1020
     ctggcaaagg cgtctttgag aaccggtcca ttcctgatgt ggctatactg gattgtaaac      1080
     aattacaatc agtttccatg gaaggaaata agaaagtgtt ttcgccgtca gcctcgtttc      1140
     gagtgacttt ccccggttcc gtcctcccga aatttgtttg tattgacagt gctttttacc      1200
     cagtgcgtct ttacgtgccg aaggtattca attgtaccaa ctgcaagcag cttggccaca      1260
     gtgctagcta ttgcgacaac aagccccgtt gtggcaaatg caaccaagct cacttggaag      1320
     atgcttgcac acaggaagcc gaaaaatgta gctactgtcg cgaggaactt catgacctgc      1380
     agaaatgccc ggcttataaa agacgcattc gaaatgagag tcgctcaatt gtgaagcgct      1440
     ccaagaagac atacgcggaa atggtaaaat ctttaaatcc gtccgcaaaa gagtcttcat      1500
     cagccatccc agttggtaac tcttttcaag agttgtcttc cgatgaagcg aacgacgacg      1560
     aaaccgatgg gggagattct tcggaggtac acgcacccgg taaacgaaag tctcaatctt      1620
     ctccgggact gcgccgaaag gtaatgaaat cttccctcaa aagtttgcct aattcaaaag      1680
     gaggtggggc aaatttgaaa ttgccgaaga aacaggtctt tgatgcttcc gttccgtgtt      1740
     gcagcaaaga tctgccgccc ccgcctccac cgattaaata tacttcaaaa agaagctcta      1800
     gacaagatag caagaaaaaa gctactgaag tccctcgctc ttcctcgaaa acccccgggg      1860
     ccaagcgagg actgataact tttacggccc ttgtggatcg catatgcaat gccctcggag      1920
     tttcagactc attcagaggc atactcgacc tttttctccc cgcaatagaa gagtatctca      1980
     gggaattgac tatttcgtgg cccctccttg cttcgatcat atctttcgat ggataattca      2040
     tcgagtgagg tacaagatat gatcactgtg ctacagtgga actgtcatag tctaaaacct      2100
     aaattagaca catttaagtt tttgcttcac aactccgatt gtgatatatt tgcactctgt      2160
     gaaacatggc tttcttctga agatgatctt aacttctacg attttaacat tatacgccag      2220
     gatcgagatg ataattacgg gggtgtgctt ttagggatca aaaagtgcca ctcattctac      2280
     agaatcccca tcccgactca tccaggcata gaaatcgttg cttgccaaat aagcgtaaag      2340
     ggtaaagacc tttgcgtagc ttctgtttat attcctccaa gagtttcaat aaaccgccgt      2400
     catctctgga atgcagtctc catgctctca tctccagttt taatactggg tgatatgaac      2460
     tcacatggta ctggatgggg cgaatcttat gacgattata gagcggctat tttctatgac      2520
     ttatgcgacg atttcaactt gaacattttg aacacaggtg aagtgacacg tatttcatcc      2580
     gacggcaaag aaagccgcct tgacctgtct ttgggatcaa gttcactatc attcgattgc      2640
     atgtggaagg tgatcgatga cccccatggt agtgatcact tgcccataat aacttctatc      2700
     agaaataatt ttgaaaggtc agaacagtca attcaggttc cttttgacct cactaggaat      2760
     atcgattggc aaaaatttgc atcagcggta acctttggta tcgaatcatt caacactctc      2820
     ccaccgttgg atgagtatcg attcctaaca gaattgattt ataaaagtgc attagaatcc      2880
     caaaagcaac gagttccaag tgcatccttc aaaagacgac cagccacacc tggttgggat      2940
     gatgaatgca ctcagttgta tcgagaaaaa tccaatgcct ttaaagcttt tcgtagatat      3000
     ggtacctcag aactttattt agagtactcg aagctcgaaa aaagactgaa gaatcttatt      3060
     aaagcgaaga agcgtagcta ttggcgacgt ttcatcgatg gcctctcacg agaaacttca      3120
     atgacgacgc tttggagagt ggctcgcaac atgcgaaacc gctcatcctc aaatgagagt      3180
     gacgaatact ccaatcgttg gatattcaac ttcgcgaaaa aggtctgtcc agactcagtt      3240
     ccagctcaac cgccatcctg ggaaacccag agagacgatg cgttggacag accattcact      3300
     atgctggaat tttctatggc tcttctttca tcaaacaact cctctccggg acgcgatatg      3360
     attaagttca atcttcttaa aaatctccct gatatcgcta aaagacggtt gcttgacctg      3420
     ttcaacttat tcatggagca caacattgtt ccacctgaat ggagacaggt caaagtaata      3480
     gctattcaaa agcctgggaa accagcgtct gatcataatt cgtaccgccc gatcgctatg      3540
     ttatcatgtt taaggaaatt gttagaaaaa atgatcctat cccgactcga tcactgggtc      3600
     gaatcaaaca acatgctttc cagtacacaa tttggctttc gcaagggcaa aggaacaaac      3660
     gattgtctag cgttgctttc atcagatatt caactagcct ttgcggacaa ggagcaattg      3720
     gcttcggttt tcttggatat taagggcgct tttgattcag tttccataga aatattgtca      3780
     gaaagcctgc acaatagtgg attacctgga atattgaata atttcttgta caatctgttg      3840
     tcagaaaaac acatgagctt cactctcggt caactgacaa cttccagaat tagctatatg      3900
     ggccttcccc aaggctcatg tctgagtccc ttgctttata atttttatgt taaagatatt      3960
     gacaactgtt tggaagaacc atgcacgcta agacaacttg cagatgatgc tgtggtttct      4020
     atgaagggcc cacgagcgga aatcttgcaa agaccattgc aaaattccct tgataatcta      4080
     tccacttggg ctagaaattt agggatcgag tttgctccgc aaaaaactca actggtcgta      4140
     ttttcaagga agcggaatcc tgcccaacta aagcttaagc ttttgggaac agacatcgac      4200
     cagtctttga cttcaaaata ccttggggtc tggtttgatt caaaaggcac ttggcgaact      4260
     catattaggt atttaacgga aaaatgccaa caaaggatca attttctacg aacaattacc      4320
     ggaacatggt ggggtgctca cccggaagac ctcataaaac tctataaaac aaccattctc      4380
     tctgttctag agtatggctc tttctgtttt ctctcagcag caaactgcca cttgattaaa      4440
     ttggaacgaa ttcaatatcg ttgtttgcgt atcgccttag ggtgtatgca ctcgacacat      4500
     aatgcgagcc tagaggttct ggcaggggtt ttaccgctac aaaaccgatt ctgggagctc      4560
     tcgctaagaa tacttattaa gtgtggagtg agcaacacac tcgtcatcga aaacttcgaa      4620
     gaattgctca aactgaacac tcagtcaaaa ttcatgagag tttatctcta ctacatgtca      4680
     tctgacatta gccttccatg ttataaccct ccacgtgtac gcttcaccaa tgacagttcc      4740
     tctgttgaat atgatctgtc catgaaacaa gctattcatg gaattccaga tcaacttcga      4800
     tgtattacta tcccacgtat tttcaacgca aagtaccaga atgtcgattc ctacaggaga      4860
     tatttcactg acgggtcccg tataaatgga tccactggct tcggtgtctt caatgaaaac      4920
     tcttccgcct tccgaaaact tcaggaacct tgcacggttt atgttgctga gctggcagca      4980
     atcaacttcg ctttggggat gatctctaac atgcccgcag accacttctt catcttctcg      5040
     gatagtctca gttctattga ggcactccga tcgatgaaac ctgtaaagca tgcatcttac      5100
     tttcttacaa aaataagaga gcagatgtgt gcactggtcg aaagatcata taagattacc      5160
     tttgtatggg tcccctcaca ttgcttaatt tatggcaatg agaaggcgga ctctctcgca      5220
     aaggtgggcg ctgaggaagg tgagatatat gatagaagaa tttcacacga tgaattgttt      5280
     catttagtac gtcaaagttc tcttcacggt tggcaaagcg actggctaaa tgaccaactg      5340
     ggacggtggt tacattccat aatccctaga gtttccttgc gagcgtggtg gaaaggttgg      5400
     gatgtaagtc gagatttcat tcgcgtgatg tcaagactta tgtccaacca ttactcgcta      5460
     gacgcacatt tgcacaggat caacctcgcg ctgagcaata tatgtaatag gtgtggttcc      5520
     ggttatgatg acatcgatca cgtagtttgg cagtgcccgg atatggacgc ctccagagca      5580
     caacttatgg atacccttgc ggcccgaggt agacaaccct atgtttcagt tagagatgtg      5640
     ttgggctccc gcgatctcgt ctacatgttg tcgatttacg attatcttcg cttgtgttgt      5700
     ataaaagttt aattctcttg tgttctcttc cccagttttt ttttttctct ctgtgttatg      5760
     tcccatttgt gttggattga tgttcctggc catccggcaa tcgaaaaccc acatgaagtt      5820
     ggtatacgcc atgatacgac aaacgagcaa ccatgaaata ccacccggat gagctgcaaa      5880
     gaaccctgta acccaatccc aacctagccc ttcctaaaaa tatttgtgac cactaacctc      5940
     gagttgccac gagtaccctg gctccaaccc ggactaaact tggtacttaa gaagttaaac      6000
     aattgtaaaa aagtacaaaa atgaatctcg gctccgtaaa gcgttaaacg cgatagagcc      6060
     ttaaataaat gaattggtaa aaaaaaaaaa aaaa                                  6094
//
ID   Loner_Ele2  repbase;    DNA;    INV; 6333 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Loner non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Loner;
KW   Loner_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6333
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6333
RA   Kojima K.K. and Jurka J.;
RT   "Loner non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >99% identical to consensus. The consensus
CC   is ~100% identical to the original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           849..2297
FT                 /product="Loner_Ele2_1p"
FT                 /translation="MGVDDDGGGTSYPLTESSNVLNQQNTNTSMPNPCVSP
FT                 QSDVSQMDTNILPSPTSPRLKAYPPDSGGPFVVFFRSKGKRLNTIQISKDL
FT                 TKRFSSVVAIDTVGSGKLRVTVSDRKQANEIVACELFTREYQTYLPSHRVE
FT                 IAGVVTEGSMTCEELMQGCGRFKNPSLPSVPILECKQLHSVSLVGEKKIYS
FT                 HSESFCVTFSGSALPNFLVIGKLRLPVRLYVPKVMNCTNCKQLGHTAQYCC
FT                 NKPRCASCGERHVDGACSIPPKCVYCNESPPHALENCPTYVRRQQHQRRSL
FT                 EQRSRRSFAEMLKKAAPSAESQNIYSSLSLDDQGSDSEVGEGISFVFKGSS
FT                 RKRVRLQRPTKKPRNLSSSDDPPAMKNTKPVAKVSKLSPPGFKLQEERDFP
FT                 PLPGKSKIPNIPKFQTAQPKESSHSEPLGQPQGVPMFTLSGIVDIILNFFN
FT                 ASDPVKNIVKGLLPCVTPLLKQLASRMPLLATIISFDG"
FT   CDS           2293..5985
FT                 /product="Loner_Ele2_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDKLSTEVEDMISVLHWNCRSIMPKLDSFKFLVSNLQ
FT                 CDVFALSETWLTPDVTLPFHDFNIIRLDRSDSYGGVLLGIKKHHSFYRVDL
FT                 PPMSGIEVVACQVTIRGKSLSVASIYLPPRSAISRRDLSHICSVMPEPRLF
FT                 IGDFNSHGTGWGELYDDHRSTLIYDLCDDFNMTILNTGEVTRVAPPAQDGS
FT                 PRDSRLDLSICSSSLSLDCSWRVIQDPHGSDHLPIVVSISNGTQQSSSIDL
FT                 AYDLTKHIDWGKYAETIIDGEQAVEVLPPLEEYRFLSELILNSALQAQRRP
FT                 VPGPSVRKKPPNPWWDEECKALYREKSAAFKDFRKRGSIDNYERYSSLERK
FT                 FKSLVKAKKSGYWRHFVEGLSRETSLRTLWTVGRRMRNTSSVNEDRESSPR
FT                 WIIDFAKKVCPDSVPVDRVRRDIPVDRDAMDRPFSMVEFSLALLSCNNSAP
FT                 GMDRIKFNLLKGLPDVAKRRLLNLFNHFLECNIVPDDWRQVRVIAIQKPGK
FT                 PASNYNSYRPIAMLSCIRKLLEKMILFRLDKWVESNGMLSDTQFGFRRAKG
FT                 TNDCLALLSSEIQLAFAQKEQMGSVFLDIKGAFDSVCVDVLSDKLHASGLS
FT                 SVLNNFLYNLLSEKHMSFTHGNLSVSRISYMGLPQGSCLSPLLYNFYVRDI
FT                 DDCLMENCSLRQLADDCVVSVTGPTAAELQGPLQDTLDNLSTWALKLGIEF
FT                 SAEKTEMVVFSKKHKPAKFPLTLMGKTITHSLSSKYLGVWFDAKCTWGKHI
FT                 VYLTQKCQKRINFMRTITGTWWGAHPEDLIKLYQTTILSVLEYGSFCFQSA
FT                 AKTHMLKIQRIQYRCLRIALGCMNSTHTMSLEVLAGVQPLTDRFAELTLRF
FT                 LIRCEVLNPLVIENYEKLLEHNPQTRFMSVYYWYMTLEVSPSSVNTNRDNF
FT                 LEFDCSSVVFDLSMKQDIHGIPDHFRSKFIPPMFASKFGHVSESRQFFTDG
FT                 SKMDDITGFGVYNVSHSASFMLQKPCSVYVAELAAIHYTLEYISSLPPEHF
FT                 FIFSDSLSSLEAVRSMKPVKHSAYFLNRIRQALSALSIRSYTITLAWVPSH
FT                 CSIPGNEKADSLAKVGAKEGDVYERQIAFEEFFALARRETLISWQQKWRDG
FT                 EMGRWLHSIFPQVSKKPWFKGLGMSRDFIRVMCRLMSNHYSLSAHTHRIGL
FT                 SESNLCVCGVAYQDIEHVVWGCVEHRGVRSELTETLRIRGKQQKPVREVLA
FT                 GLDLEYMNLIHLFLKRINIRV"
XX
SQ   Sequence 6333 BP; 1592 A; 1493 C; 1438 G; 1810 T; 0 other;
     tgcgagacag tcgatagttc tcgtgtgtcc gggttcaccc ccgtttttcc aaatctttgg        60
     tatttcgacg cctattgcaa agtgttttta gtgcagtgaa gagccttagt tcggcttgga       120
     agcggaacac ttttggcgaa gccattgtgt tgccgtttaa tcgagttttg cgcaaaagta       180
     ttgaacgttt tcgccattgc gtggttattt tccgatcacg tgtatcgtag aagacagctt       240
     gcacctcgtc ccgtgtgcta cctgagtgat catcgtttgt ggtgtgcata tagcgtgcac       300
     agcggtgcgc tctccacacc gacagtggtc accatcgtta tcgacgcctg tgttggttgg       360
     tggcaggcag tgagagacca accacacata caccgtacca gcgaaccagg aaccagaccg       420
     tccttttttg atcacgtgta tcatcgaagg cagctcgcac cccgtcccgt gtgctacctg       480
     tgtgcagtgc agagttcatc agtgcgatca tcgtctgtgg tgtgcgtata gcgtggacag       540
     cggagatcaa ccacacatct acgcgtccca gcgaatggtc gtacgttact tgctacctct       600
     ccccaagcgt agacgcccat cggttacagc atcgacgacg ccagcgtgga tagagtaaaa       660
     gataagtacc tctcgttgtt cttctcctct tcacgtcttt tttgattagt ttttactgcg       720
     tgtgaaagtt ttccctcttc cctttcccct ttgtatgttt ttttttttca gtttgattca       780
     atttccattt ctgtgaatag tgttagtttg agttattcgt gcgccctttg cggtgttaag       840
     ctaccgcaat gggtgtagat gatgatggcg ggggaacgtc gtatcccctc actgagtctt       900
     cgaatgtgtt gaaccaacaa aacacaaaca cctctatgcc caatccatgt gtgtcccctc       960
     aatctgatgt gtctcaaatg gacaccaata ttctaccatc tccgacgtcc cctcgcctca      1020
     aggcctaccc gcccgactct ggtgggcctt ttgttgtttt ctttcgatcc aaaggcaaac      1080
     ggttgaacac tattcagatc agtaaggatc tgactaagcg attctcttcc gttgtcgcca      1140
     ttgacacagt gggttctggt aagctgcgcg tcaccgtcag tgaccgtaaa caggccaatg      1200
     agattgtggc ctgtgagctc tttactcgtg agtaccaaac ttatctgcca agccatcggg      1260
     ttgagattgc gggagtggtc accgaaggca gtatgacctg cgaagaattg atgcagggtt      1320
     gtggtcgctt caaaaaccct tctctcccat ctgtccccat actggaatgc aagcaattgc      1380
     attccgtatc cctggtggga gaaaagaaga tctattcaca ttctgaatcc ttctgtgtga      1440
     ccttttccgg atctgctttg ccgaattttc ttgtaatcgg caaacttcgt ttacctgtgc      1500
     ggctgtacgt accgaaggta atgaattgca caaattgcaa gcagctgggc catactgccc      1560
     agtattgctg caataaacct cgctgtgctt cttgcgggga gagacatgtg gatggtgcat      1620
     gtagtatacc gccaaaatgc gtttattgca acgaaagtcc accacatgcc ctcgaaaact      1680
     gcccgacgta cgtacgccgg cagcaacatc agcgacgatc attagagcag cgctctcggc      1740
     gtagttttgc cgagatgttg aaaaaggctg ctccgtctgc tgaatcccaa aatatctact      1800
     cttctctgtc tcttgatgat cagggctccg actctgaggt tggtgaagga atttccttcg      1860
     ttttcaaggg ttcatcgagg aagcgtgtga gactccagag acccacaaaa aagcctcgga      1920
     atctgtctag cagtgatgac ccaccagcca tgaaaaatac taagcctgtc gcgaaagtct      1980
     caaagctttc acctcctgga ttcaaactcc aagaggaaag agactttccg ccactaccgg      2040
     gaaaatctaa aatcccaaat attccaaaat ttcaaactgc tcagccaaaa gaaagttcgc      2100
     attcggagcc cctagggcaa cctcagggcg ttccaatgtt tacgctttct ggcattgtag      2160
     atatcatcct taatttcttc aatgcttctg acccagtgaa gaacattgtc aaaggattgc      2220
     ttccatgtgt gactcctctt ttgaagcaac tggcttctag aatgcccctc cttgcaacga      2280
     tcatatcttt tgatggataa attatccaca gaggtcgaag atatgatttc tgttctacac      2340
     tggaactgtc gtagtattat gcctaaatta gatagtttta aatttttagt tagtaattta      2400
     cagtgcgatg tttttgcgtt atcagaaaca tggctaacac ctgatgtgac ccttcctttc      2460
     catgatttta atattattcg cctggatcga tccgactcat atggaggagt gcttttgggg      2520
     atcaaaaagc atcactcgtt ctacagagtc gatctgccgc cgatgtcagg cattgaagtc      2580
     gttgcatgtc aggtgactat ccgaggcaaa agcctcagtg tcgcctccat atatcttcct      2640
     ccgagatcgg cgatatctcg cagagatctc tctcacatct gctctgttat gcctgaacca      2700
     cggttgttca ttggggattt caactcccac ggaacaggct ggggggaact gtatgacgac      2760
     caccgatcaa cgttgatata tgacctctgc gacgacttca atatgacaat tctcaacact      2820
     ggggaagtta cacgagtggc acctccagct caagatggaa gtcctaggga tagccgttta      2880
     gacctctcaa tatgttcaag ctcgttatcg ctggattgtt catggagggt aatccaggat      2940
     ccccatggta gcgatcactt gccgatcgta gtttcaattt ccaatggaac acaacagtct      3000
     tcatccatcg atctcgccta cgacctcaca aagcacatag actggggaaa gtacgcggaa      3060
     acgatcattg atggagaaca agcggtagaa gtacttcctc cgttggaaga gtatcgcttt      3120
     ttatccgagt tgattctcaa cagcgctctt caagcccaac gccgtcctgt gcctggtccg      3180
     tcggttcgca agaagcctcc caatccgtgg tgggatgaag agtgtaaggc actctatcgc      3240
     gagaaatccg ccgcgtttaa agacttccgg aaacgtggtt caattgacaa ctatgagcgc      3300
     tattcttccc ttgaacgcaa gtttaaaagc ttggtcaaag cgaagaaaag cggttattgg      3360
     cgtcattttg tggaaggatt atcacgtgag acctcgttga gaacgctttg gaccgtcgga      3420
     agaagaatgc gtaatacatc gtcggttaat gaagatcgag agagctctcc tcggtggatt      3480
     atcgatttcg ctaagaaagt ttgtccggat tccgttcctg ttgatcgcgt gcgacgagat      3540
     attccggtgg atagggacgc catggataga cctttttcga tggttgaatt ctcacttgct      3600
     ctcctttcat gtaacaattc cgctccagga atggatcgaa tcaagttcaa tttgcttaag      3660
     ggcctacctg acgtcgcaaa gaggcgccta ttgaacttgt ttaatcactt tctggagtgt      3720
     aacattgttc cggatgactg gaggcaggtg agagtaatag ccatccaaaa acccgggaaa      3780
     cccgcgtcga actataattc gtaccgccca attgcgatgt tgtcgtgtat tcgcaagttg      3840
     ttagagaaga tgattctctt tcggctggat aaatgggttg aatcgaatgg catgctgtca      3900
     gatacacagt ttggttttcg cagagccaaa ggaacgaacg actgtcttgc gctgctttct      3960
     tcagaaattc aacttgcctt tgcccaaaag gaacagatgg gttcagtgtt tttggatatt      4020
     aagggtgctt ttgactcagt ttgtgttgat gtcctttcag acaaactcca cgcaagtggc      4080
     ctttcatcag ttttgaacaa ttttttgtac aatttgttgt ccgagaagca tatgagtttt      4140
     actcatggca acttgtcagt ttcacgaatt agctacatgg gtctccccca gggatcatgt      4200
     ctgagtcccc ttctttataa tttttatgtg agagacattg atgactgtct catggaaaat      4260
     tgctcgttaa gacagcttgc agacgactgt gttgtttctg tcacaggacc aacagcagcc      4320
     gaactacaag gacccttaca agatactctg gacaatttgt ctacttgggc cttaaagctg      4380
     ggtatcgaat tctctgcgga gaaaactgag atggttgtct tttcaaagaa acacaaacct      4440
     gccaagtttc cgcttacact catgggtaag acaatcactc atagcttgtc ttctaaatat      4500
     ctcggggtct ggttcgacgc caaatgcacc tgggggaaac acattgtgta tctgacacag      4560
     aaatgccaaa aacgaatcaa cttcatgcga actataaccg gaacatggtg gggagcccat      4620
     ccggaagatc tgatcaagct gtaccaaaca accatcttgt cggtcttaga gtacggtagc      4680
     ttttgctttc aatccgcggc gaaaacacat atgctgaaga tacagcggat tcagtaccgc      4740
     tgtcttcgca tcgcgctagg ctgcatgaac tcgactcaca caatgagttt agaggtactt      4800
     gcaggagtac agcccctgac agatcgtttc gcggagttaa cactcaggtt cctcatccgt      4860
     tgtgaggttc tcaatccatt ggttattgaa aactacgaaa agctgcttga acataaccct      4920
     caaactcgtt tcatgagtgt gtactactgg tacatgacgc tggaggttag cccatcttcg      4980
     gttaacacca atcgtgataa cttcctagaa ttcgactgtt cctctgtagt atttgatttg      5040
     tccatgaagc aagatatcca tggtatacca gatcactttc gttcaaagtt tatccctccc      5100
     atgtttgcaa gtaaattcgg gcatgtcagc gagagccgac agttcttcac tgatgggtca      5160
     aaaatggatg atatcactgg tttcggtgtt tacaacgttt ctcatagcgc ctccttcatg      5220
     cttcaaaaac catgttctgt atatgttgct gaactagcag ctatacatta caccttagag      5280
     tacatcagtt ctctcccacc cgagcacttc ttcatttttt ccgacagttt aagttctctg      5340
     gaggctgttc ggtcaatgaa gccggtgaag cactcagcgt acttcctgaa tagaatacgc      5400
     caggcattga gtgctttgtc aattcgctct tacactatta ccctagcttg ggtcccttcg      5460
     cattgctcca ttcctggcaa tgagaaagcg gactctctgg ctaaggtagg cgctaaagaa      5520
     ggcgatgttt acgagcgtca aatcgccttc gaagaatttt ttgcattggc ccgtcgggag      5580
     accttgatca gctggcaaca gaaatggaga gacggagaaa tgggtagatg gctgcattcc      5640
     atatttccac aggtgtcgaa aaagccatgg tttaaggggt tgggcatgag ccgtgatttc      5700
     attcgtgtca tgtgtcggct tatgtccaat cactattcgt taagcgcgca tacccaccgt      5760
     attgggctct cagaaagcaa tctctgtgtt tgcggcgtgg cttaccagga tatcgaacat      5820
     gttgtgtggg gatgcgttga gcatcgtggc gtcagatctg agctgactga aactctccgg      5880
     atccgaggaa aacagcagaa acctgtcagg gaagtgttgg cgggccttga tttagaatat      5940
     atgaatttaa tccatctgtt tttgaagcgt atcaatatcc gggtttgatt gtgttcgttc      6000
     cctgtctttc tttttcccat tcaaattgtc ctcttctcgt cgtgtctccc acaaaccgtt      6060
     tctgtttagt ttcattacag atctggacat cctgtccctt caagcttcat cagcttagta      6120
     gtctaagtag cttaagaaat tccaaaaaat cctttccttc cctgtttcaa atgtatccac      6180
     taaccttaaa acttccgcaa actaacatag tttttaaaat aagttcaaat ttcaaaatgt      6240
     aaataatgta aaaaaaagaa aagatttcgg ctctgttatg ccctacggcg cctgagcctg      6300
     ccaaataaac gagataagta aaaaaaaaaa aaa                                   6333
//
ID   Loner_Ele3  repbase;    DNA;    INV; 5945 BP.
XX
AC   .
XX
DT   07-OCT-2010 (Rel. 15.10, Created)
DT   07-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Loner non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Loner;
KW   Loner_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5945
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5945
RA   Kojima K.K. and Jurka J.;
RT   "Loner non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >98% identical to consensus. ~10 bp TSDs.
CC   This consensus is ~99% identical to the original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           366..1811
FT                 /product="Loner_Ele3_1p"
FT                 /translation="MFSSRDGNIPTDTFPQQEIACGNVDMASHTGTISKHG
FT                 SSLTQPSKETSIQHSHSKQCDVENENVHFSQQPRIRQYVDDPNRERWVVFI
FT                 RRVNKKIRVKQVTSDLIKHYPSVIFITEVNRDKLRVVFTNYKEANAVVNDD
FT                 RFRLEYRVYVPARVVEIDGVVTSDSDLSPNDFKEAVGVFKNPNIPPVKIID
FT                 CQQLKKVIKNGSNSQYVPSGSFRITFEGSALPHYVTMNKILRLRVRLYVPK
FT                 VMSCTNCKQLGHTKSFCSNKAKCLKCEGQHEEDACQKNVEKCVLCGLDPHD
FT                 KKDCPKFQNYSSKLKYSVKERSKRSYAELVKKTLVSNMFLELSDSDDDSDS
FT                 DTEYDSLPSQKGKRGRKHIPSSVMSKNKQKVARIEKVHTPEKYNLVPRDSV
FT                 EFNKSFPLLSGNAHRDTSSTEPKFQSQKENTMFTGFLKLSTIIQWVLDILK
FT                 APKPIQDLLFGCIPMIANFGKQMTIQWPILSLIDFDG"
FT   CDS           1807..5487
FT                 /product="Loner_Ele3_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MARYANQLTDHVSVLQWNCRSVMANINSLNLLISETN
FT                 CDIFALCETWLIPELTVDLIDFNIIRQDRSDGYGGVLIGIKKCHSFYRIGV
FT                 SNKSKIEVIACHVNMKGKXFSLVSFYIPPKVTFSYNDLETILDTIPAPWVI
FT                 VGDFNCHSTAWGSDHDEKRAMPIHDMLDCYNLCILNTGNVTRIAGPQKKDA
FT                 VLDLSFCSSSMVYDCSWIVIDNPHGSDHLPIVISIHNDNQRMREYVNIEYD
FT                 LTKNIDWKKYSSIISEALENLADLCLEDEYDFIVNLIIDSAIKAQNKPIPN
FT                 KKIVNRIPNPWWDKECNTVVKEKSAAFKVYRKVRSRQSYEKYISLERKFKN
FT                 LVRAKKKSYWRKFVGELSHETSMTALWKAAKNMRNKSSVNEDKEYSHEWIK
FT                 KFAKKICPDIVSENQICFDTSEDSVPMFTMIEFSLALLSGRNNSPGKDGIK
FT                 FDLLKHLPDVAKKRLLNLFNWFLDHNVIPNDWRKVKVIAVQKPGKPPSDHN
FT                 SYRPISMLSCIRKLMEKMILNRLDNWAESNKLISETQFGFRKGKGTTDCLG
FT                 LLTTEIDIAFGSKQQMTSVFLDIKGAFDSVSLGILTQKLHRKGLSPKLNNF
FT                 VNNLLREKHMYFSSGSISEYRVSYMGLPQGSCLSPLLYNIYVSEIDNCLAE
FT                 GCTLRQLADDCVISVIGKDREDMQAPLQATLDSLSSWATDLGIEFSPEKTE
FT                 MVVFSKKHHPAKFELQLSGKKINQSLSYKYLGIWLDSKCTWKKHVQYIKSK
FT                 CEQRINFIRSITGSWWGAHPEDLIRLYKTTVRSVIEYGSFCFYPAARTHIL
FT                 VLERIQYRCLRLALGSMNSTHTKSLEVLAGVPPLMIRFYELGSRFLIRSEI
FT                 MNPIIIANFEKLLQLMVQSRRMPLYYWHMSEDISPAIIDSEQLNMNFLQLN
FT                 NDKVTYDISMKQEINNIPDYLRSKIIPSIFSSKYGRLSSDKCFYTDGSSID
FT                 NSVGYGVFNENVSTYHQLKNPCSVFVAELAAIYNALIIILNLSVGSYYIFS
FT                 DSLSSIEALKSIKPQNATYFIIEIRKLLNTLTMRSFSITFIWIPSHCLING
FT                 NEKADILAKKGAIVGEIFERKIDFREFFQTCRRKAIAEWQRSWDEGSMGRY
FT                 LYGLAPKISKKSWFKDYNLTRDFIKVISRLMSNHYRSKAHLKRIGLSDTNH
FT                 CDCGEGFEDIEHVVWVCSKYEVKRQELIDSLPVLWKPPNATVRDALFSRNP
FT                 NFLNPIYKFLKAIDFPI"
XX
SQ   Sequence 5945 BP; 1960 A; 971 C; 1096 G; 1917 T; 1 other;
     ttcattggga tcgcagtagt cgtaacgatc ggacgtgcgc ttactcgctc tggcagtgat        60
     ttgacagcag attttttcgt ggtaaagaaa attgccgtgt cgtgcaggaa aaaaagtggt       120
     ggcagctgga attgtaggaa ttttcaagtc gtcggtttgc tggctggcac atctttcgtt       180
     gttcaatagc agataagtgt ttttcattgt tccttttatt attagcggta tctaaaagcc       240
     ttaaattcca cccttcttgt tttatccatt atattgttat ttattttttc tttcattagt       300
     ttctgtttta ccatttcgtt ttattcaaag ttttttttta actcttttca ataaagtcaa       360
     aagggatgtt ttcgtcgaga gacggtaaca tccctactga cacatttccg cagcaagaaa       420
     ttgcctgcgg taatgttgat atggcctctc atactggaac tatatctaaa cacggatcaa       480
     gcctaacaca accatctaag gaaacatcca ttcaacattc tcattctaaa cagtgtgatg       540
     ttgagaatga gaacgttcat ttttcacaac aaccgagaat acgacaatat gtagatgatc       600
     cgaaccgcga acgttgggtg gttttcattc ggcgtgttaa caaaaagata agagtgaaac       660
     aagttaccag tgatctgatc aaacattatc cttcagtgat ttttattact gaagtcaatc       720
     gtgataaact tagggtggtt ttcacaaact ataaagaggc caatgctgtt gtcaatgatg       780
     atcgctttcg tctagaatac cgtgtatatg ttccagcaag agttgtagaa atcgatggtg       840
     tagttaccag tgacagtgac ctgtctccaa atgattttaa ggaagctgtg ggtgtgttca       900
     aaaacccaaa tataccccca gtaaaaatta tagattgtca acaactgaag aaggtaatta       960
     aaaatggatc taactcacag tatgtaccat caggatcatt tcgaattact tttgaaggtt      1020
     ctgcgcttcc acactatgtt accatgaaca aaatcttacg tttacgtgtt cgattgtatg      1080
     ttccaaaggt tatgagttgc acaaattgta aacagcttgg acatacaaaa agcttttgtt      1140
     caaataaagc aaaatgtctc aagtgtgagg gccaacatga agaagatgct tgccagaaaa      1200
     atgtagagaa atgtgttttg tgcggtctag atcctcatga taaaaaagat tgccctaaat      1260
     ttcaaaatta ctcatcaaag ctaaagtact ctgtcaagga acgttctaag cgatcctatg      1320
     cggaattggt aaaaaaaacc ttagtttcaa atatgttttt ggaactatca gattctgatg      1380
     atgactctga ttcagatact gaatatgatt ccttaccatc gcagaagggc aaaagaggta      1440
     gaaagcatat tccctcctct gttatgtcaa agaacaagca aaaagtagct aggattgaga      1500
     aagttcatac tccagaaaaa tacaatcttg ttcctcgaga ttctgttgaa ttcaacaaaa      1560
     gcttcccatt actttctggt aatgctcatc gtgatacatc ctcaactgaa ccaaaatttc      1620
     aatcacagaa agaaaatact atgttcactg gttttttgaa actttcaact attattcagt      1680
     gggttttgga tattttaaaa gcaccaaaac ctattcaaga tttattgttt ggatgtatac      1740
     cgatgatagc taactttggt aaacagatga ctattcagtg gcccatttta tctttaattg      1800
     atttcgatgg ctagatacgc aaatcaattg actgatcacg tttcagtatt acaatggaat      1860
     tgtaggagtg ttatggctaa tatcaactca ttgaatttat taatatcaga aactaactgt      1920
     gatatttttg cgttatgtga aacatggttg attcctgaat tgacggttga tttgattgat      1980
     ttcaatatta ttagacagga ccgaagcgat ggctacggag gggttttaat tggtattaag      2040
     aaatgtcatt ccttttatag aattggtgtt tctaataaat ccaaaataga agttatagca      2100
     tgtcatgtga atatgaaagg taaggamttt tctctagttt ccttttatat acctccaaaa      2160
     gtaactttta gctacaatga tcttgaaaca atacttgata ccattcctgc gccttgggta      2220
     atcgttggtg attttaattg tcatagtact gcatggggtt ctgaccacga tgagaaaaga      2280
     gcgatgccaa tccatgacat gttagattgt tacaatttat gtattctgaa tacaggaaat      2340
     gtaacaagaa ttgcaggtcc acaaaaaaag gatgctgttt tagatttatc attctgttca      2400
     tcttcaatgg tttatgattg ttcatggata gtaattgaca atccgcatgg aagtgatcat      2460
     ctaccaatcg ttatttcaat tcataatgat aatcaaagaa tgagggaata tgtgaacatt      2520
     gaatatgatt taactaaaaa cattgactgg aaaaaatata gttcgataat ttcagaggct      2580
     cttgagaatc tggcagattt atgtttagag gatgaatatg attttattgt gaatttgatt      2640
     atagatagtg ctattaaagc tcaaaataaa ccgattccaa ataaaaaaat agtaaatcgc      2700
     ataccaaatc catggtggga taaagaatgc aatactgttg taaaagaaaa atctgctgct      2760
     tttaaagttt atcgaaaagt gcgttcgaga caatcttatg agaaatatat ttcacttgaa      2820
     cgtaagttta aaaatttagt gagagcaaag aaaaaatcat attggagaaa gtttgtcgga      2880
     gaattatcac atgagacctc tatgactgct ctttggaaag ctgctaaaaa tatgagaaat      2940
     aaatcttcag ttaatgagga taaagagtat tcacatgaat ggatcaaaaa gtttgctaaa      3000
     aaaatttgcc cggatattgt ttcagaaaac caaatttgtt ttgatacttc tgaggatagt      3060
     gtaccaatgt tcacaatgat tgagttttca ttagctcttc tatcagggag gaacaattct      3120
     ccagggaaag atggtataaa atttgatcta ttaaaacatc ttccagatgt agctaaaaaa      3180
     agattattga atttatttaa ttggttccta gaccataatg ttattccaaa tgattggaga      3240
     aaagtcaagg taattgcggt ccaaaagccg ggtaagccac cttctgatca caactcttat      3300
     cgtcccattt ctatgttgtc atgtatacga aaattaatgg aaaaaatgat tctgaaccgt      3360
     ttagacaatt gggctgaatc aaataagttg atttcagaaa cacaatttgg ttttcgtaaa      3420
     ggaaaaggga ctaccgattg tcttggtttg ttgacaactg aaattgatat agcgtttggt      3480
     agtaaacaac aaatgacctc tgtatttcta gatataaaag gggcctttga ttcagtttcc      3540
     cttggcattc ttactcaaaa attgcatagg aaaggacttt ctccaaaact caataatttt      3600
     gtgaataatt tattaaggga aaagcacatg tatttttcta gtggctcaat ctcagaatac      3660
     cgagtaagtt atatgggttt gcctcagggc tcttgcctga gtccacttct gtataacata      3720
     tatgtgagtg agattgataa ttgcttggct gaaggatgta ctctcagaca attagctgat      3780
     gattgtgtta tttctgtaat aggtaaagat agagaagata tgcaagctcc gcttcaagct      3840
     acattagata gtttgtcttc atgggcaact gatttaggaa tcgaattttc accagaaaag      3900
     actgaaatgg ttgttttttc taaaaaacat catccagcaa aatttgaact acagctatca      3960
     gggaaaaaaa ttaatcaatc tttatcctac aaatacttgg gtatttggtt agattccaag      4020
     tgtacatgga aaaaacatgt tcaatatata aaatctaagt gtgagcaaag aataaatttt      4080
     atcaggtcca ttactggaag ttggtgggga gctcatccag aagacttaat taggttgtac      4140
     aagacaacgg tacgatctgt gatagagtat ggaagttttt gcttttatcc agctgcacgt      4200
     acacatatcc ttgttctaga aaggattcag tatcgatgtc ttcgtttagc attgggatct      4260
     atgaattcta ctcatactaa aagtttggaa gtcctagcgg gtgttcctcc tttaatgatt      4320
     aggttctatg agcttgggag tcggtttcta attcgcagtg aaatcatgaa tcctattatc      4380
     attgcaaact ttgaaaaact tctgcaatta atggtacagt ccagacgaat gccactttat      4440
     tattggcaca tgtctgaaga tatttcacct gctataatag attcagaaca gctcaatatg      4500
     aatttccttc agttaaacaa cgataaagtt acatatgaca tttctatgaa acaagaaata      4560
     aataatattc cagattactt gagatccaaa ataatacctt caatattttc atcgaaatat      4620
     ggaagacttt cttctgacaa atgtttttac actgatggct ctagcataga taatagtgta      4680
     ggttacggtg ttttcaatga aaacgtttct acatatcatc agcttaagaa tccatgttca      4740
     gtatttgttg cggagttggc agcgatatat aatgctttaa ttatcatcct taatttatcg      4800
     gttggcagct attacatatt ttccgacagt cttagctcta ttgaagcttt aaaatcaata      4860
     aaaccacaaa atgcaacata ttttattatt gaaataagaa aactattgaa tacattaaca      4920
     atgcgctctt tcagcatcac tttcatatgg ataccatcgc attgcctcat caatggtaat      4980
     gaaaaggcag atattttagc caaaaaaggt gccatagtag gtgaaatttt tgaaagaaaa      5040
     attgatttta gggagttttt tcaaacatgt cgtcggaaag caattgctga atggcaaaga      5100
     tcttgggatg aaggatctat gggacgttac ttatacggtc ttgcaccaaa aatatcaaaa      5160
     aaatcatggt ttaaagatta taatctgact agggacttta ttaaggttat ttctagacta      5220
     atgtcgaatc attatagatc taaggctcac cttaagcgta ttggtttaag tgatactaat      5280
     cattgtgact gtggtgaagg atttgaagat atagaacacg tcgtttgggt ttgttctaaa      5340
     tatgaagtaa aaagacaaga attgattgat tcccttcctg ttttatggaa accacccaac      5400
     gcaacagtcc gcgatgctct gttttctcgc aatcccaatt tcctaaatcc tatatataaa      5460
     tttctaaaag ctattgactt tcctatctaa tttttgtctt taacagtgaa ttactattac      5520
     ctgcgacttg agtgattgac ggatgtctta agccacatat caaaccgatt ccgtttcctc      5580
     aaattttcct caagccacca ttttgaactg cacgacgcct ccaataatac cattgagctg      5640
     atcatcacca tctcatctga gcaacttcac aaatccattg agaagatgga gtgacaagag      5700
     aaccgtccta cgatgcatcc caagccccga gtttagaact tctaacttgt cgtgaaagta      5760
     tgacaagatg tagaagctaa acaaaattaa tacaaacatt gtatataacg ttattgaatc      5820
     ggcccctaat actttatggt aagggcctaa ataaagatag gtttgagggt tttatgccta      5880
     taggagaaga gatttttttt tcactcctac aggctttccc tcattccaaa aaaaaaaaaa      5940
     aaaaa                                                                  5945
//
ID   Loner_Ele4  repbase;    DNA;    INV; 5831 BP.
XX
AC   .
XX
DT   08-OCT-2010 (Rel. 15.10, Created)
DT   08-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Loner non-LTR retrotransposon family from Aedes aegypti.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; Loner;
KW   Loner_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5831
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5831
RA   Kojima K.K. and Jurka J.;
RT   "Loner non-LTR retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (07-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 9
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1]. The consensus is ~87% identical to Loner-6F_AAe
CC   and 77-79% identical to Loner-6_AAe, 6B_AAe, 6C_AAe, 6D_AAe and
CC   6E_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           535..1830
FT                 /product="Loner_Ele4_1p"
FT                 /translation="METDGDGTSGENSELSSTKRFRIKTYPSSFLGPFVVY
FT                 FRKKEKPINVLLISSEIYKLYKSVKEIKKISLDKLRVIFGSRDDANSLLES
FT                 KLFCNSYRVYAPCDSCEINGIIYDEDLDCNDIVNFGSGKFKNKAIPPVKIL
FT                 DCMRLSKLTFSDKKSSYMHSNCIKITFEGSVLPDYVDIDNVIFQVRLYYPK
FT                 IMHCDRCLLFGHTSQFCSNKLKCSKCGEGHSSVDCNKSSDICIYCGKKHNF
FT                 LKECSVYIAHQTQSNHKIKNRSKLSYSEVTKTISDLPSTNMFAPLSQNVDN
FT                 EVSNDDHEHFVYKPPNKRKRIIKSIIKNDDFTNPQPSTSFDTNFPPLSSPT
FT                 SRVIPGFQKNMTYSEENSNEKNNNSNSTFQKTENSGEDNSILHILEELIEF
FT                 LGLNEFWKKIIKIILPFLASIFEKLNSIGPLICSLFSS"
FT   CDS           1833..5525
FT                 /product="Loner_Ele4_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MASSKNYNLNILQWNCRSIIPKIDRLKVLVVNCDVDI
FT                 FCLNETWLEETKSFRIPSFNIVRKDRNTAYGGVLIGIRENIEFKYLDFTID
FT                 SEIEYVAVSIKHNGLEFSIICIYIPPQTKFSLLELKTILNNIPSPFYILGD
FT                 LNAHNLAWGSHKTDGRGSLIMDVIDDLNLNILNDGSFTRIVVPPGRHSCID
FT                 LSICSNCLSMNSSWETVEDANGSDHLPILISIYNPNFNQNNLEHCVPDLTK
FT                 NVDWVKFSDLVSLALLSFDNSLSTIESYDNFSKLLVECLKKSQTKKIMQST
FT                 SKKKHSSFWWDEDCTIALKNKSNAFKLFRRSGSREHYILYCKTEAQFTRVT
FT                 KFKKRNYWRNFIENLDSDTSLSKLWTVARNMRNYNVSNIPVLEYSEDWIDQ
FT                 FASKICPDFTPLDIKYKNSSSYNYFPNLCTEFSIEEMDLALSITKNTAPGI
FT                 DNIKFIVLKNLPIDGKLHLLSIYNNFLFQNIFPMEWRFVKVVSILKPGKNP
FT                 SLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQFGFRKGRGTR
FT                 DCVALLTSHIELSFNKKQDVVSTFLDVSGAYDSVLIDLLYNKMIDCKLPLI
FT                 IANFLCNLFSFKIMHFFHNGATKMIRYSYFGLPQGSCLSPFLYNLFTRDIV
FT                 SIIPNGCYFIQFADDKVISISGKNREVIRHFMQSCLDNIDTWAHNNGFTFS
FT                 VQKTKFIIFSRKHSPIDIDLYLNNHHIDQVFEYKYLGIWFDPKLTWNNHIQ
FT                 YIQTVCSKRINFLRTITGTWWGAHPSDLITLYKTTIRSVMEYGCFSFGSAV
FT                 QSHFSKLEKIQFRCLRICLKLMNSTHTKSVEVLAGITPLRIRFDELNCKFL
FT                 FQCFSNNHPIINILKSLYEINPSSKILSSFIYCSAHNVMLDTSPGFHEYSM
FT                 NVHSFRPHIDFTLHEELKNIHPNARASFANLLFQRKFIGVEPKQIYFTDGS
FT                 LINNVAGFGVFNFHIAHFFKLETPCSIYIAELTALHFACCLIKNCAPNIYM
FT                 VCSDSFSSLHALNTINFNFKTSNIILSIKEILNDLFCRGFIIKFVWVPAHC
FT                 NIYGNEQADSLAKLGVSRGIIYNRVIYPSEYFSKLKQHSMDNWQNTWNASD
FT                 KGRYCYSICPKVKCLPWFDQLSLGRNFICFYSRLMSNHYICNSHLYRINIK
FT                 DSNLCECGESYEDIDHIVFNCTRFSLPRKAIFEKITKLGHNIPNSIRDILA
FT                 CKNLNILKILYGYFNEISYFS"
XX
SQ   Sequence 5831 BP; 1881 A; 825 C; 909 G; 2216 T; 0 other;
     cagaagaggt taatgtggca tctttggtaa gtaggctttg accgggttgc cggtattgtt        60
     tctgcgcttg tcaatttttt tccatttttc aggtggattt catttccaag cgattggttt       120
     cgaaggtgga cattttacga tctggaacat cgaggatttg catgagacga actgtactga       180
     ctaacatcaa gtttggtgct tgtggaaaat aaaagctgtt tggctagacg gtttggccgt       240
     gtgctggtgg tgtgaattcg aatttgaagg aagaaactcg aacaagctga tatcgtcaag       300
     gatttgatga aatagaaacg aacttaaaaa atcaagcttc aactaatcaa gtttattttt       360
     gtgctggtga aaatacttgg ttggcatcga cgatctcaag tcgttgtatc agattgaagt       420
     tccttaagta taattttatt tattttatta ttctaattat tattactcgt atacattatc       480
     aatattatta ttatatttgt ttatttttta taattacccc gtcaattttc cattatggag       540
     actgacgggg atgggacatc cggtgaaaat agtgaattat cttctaccaa acgttttcgt       600
     attaaaactt atccctccag ttttttaggt ccttttgttg tttattttcg caaaaaggaa       660
     aaacctataa atgttctttt aatatcttcg gaaatttata aattgtataa atctgtcaag       720
     gaaattaaaa aaatttctct tgacaaattg agggttattt tcggatctcg tgatgacgca       780
     aattcattac tagaatctaa actattttgt aattcatatc gagtttacgc accttgtgac       840
     tcgtgtgaaa ttaacgggat catttatgat gaagatttgg attgtaatga tattgttaat       900
     ttcggttctg gcaaatttaa aaataaagct attccacctg tgaaaatttt agattgcatg       960
     cgattatcga aattaacatt ttctgataaa aaatcatcat acatgcattc caattgcata      1020
     aaaattacat ttgaaggatc tgttctacca gattatgtag atatagacaa tgttattttt      1080
     caagttagac tttattatcc gaagattatg cattgcgatc gttgccttct tttcggtcat      1140
     acatcgcaat tttgttcgaa caaattaaaa tgttctaaat gtggtgaagg tcattcatct      1200
     gttgattgta acaaatcttc agatatttgt atttattgtg gtaaaaaaca taatttctta      1260
     aaagaatgtt ctgtttatat tgcacaccaa acacaatcga atcataaaat taaaaataga      1320
     agcaaattat catactctga agtaactaaa acaatttctg atttaccctc aacgaatatg      1380
     tttgctcctc tttcacagaa tgttgataat gaggtatcaa atgatgatca cgaacatttt      1440
     gtatataaac ctcccaataa aagaaaaaga attataaaat caattataaa aaatgatgat      1500
     tttacaaatc ctcaaccatc aacatcattt gataccaatt ttcctcctct tagttctcct      1560
     acttctcgag ttattcctgg ttttcagaaa aatatgactt attctgaaga aaactctaat      1620
     gaaaaaaata acaattctaa ttctactttt caaaaaactg aaaattcagg tgaagataat      1680
     tctattttac atattttgga agaattgatt gagtttctag gtttaaatga gttttggaaa      1740
     aaaataatta agataatttt accttttttg gcctccattt ttgaaaaatt gaattcaatt      1800
     ggacccctca tttgctcttt attttcttcg taatggcttc atccaaaaat tataatttaa      1860
     acattttgca gtggaactgt cgaagcataa ttcccaaaat tgatagatta aaagtgttag      1920
     ttgttaattg tgatgtagat atattttgtt taaatgaaac gtggttagag gaaactaaat      1980
     cgtttcgaat tccatctttc aacattgtcc ggaaagatcg caacactgca tatggtggtg      2040
     tgcttattgg gattcgagaa aatattgagt ttaaatattt ggattttaca atagattcag      2100
     aaattgaata tgttgctgtt tctattaaac ataatggttt ggaattttca attatttgca      2160
     tatatattcc tccccaaact aaattttcat tattggagct taaaacaatt ttaaataata      2220
     ttccatcccc tttctatata ctaggcgatt tgaatgctca taacttggct tggggtagcc      2280
     ataaaactga tggtaggggt tcacttataa tggatgtaat tgatgactta aatttaaata      2340
     ttcttaatga tggttctttc accaggattg ttgtacctcc tggtcgccat tcttgtattg      2400
     atttatctat ttgttccaat tgtttatcca tgaattcttc ttgggaaact gttgaagatg      2460
     caaatggaag tgaccatctt cctatattga ttagtattta taatcctaat ttcaatcaaa      2520
     ataatctaga acattgtgtt cctgatttga caaaaaatgt agattgggtt aaattttctg      2580
     atttagtttc ccttgcatta ctcagttttg ataattcact ttccacaatt gaaagttatg      2640
     ataatttttc aaaattatta gttgaatgtt taaaaaaatc acaaaccaaa aaaataatgc      2700
     aatctacttc taagaaaaaa cactcttcat tttggtggga tgaggattgc accattgctt      2760
     tgaaaaataa atctaatgcc tttaaattat tcaggcgttc aggatctagg gagcattata      2820
     ttttgtattg caaaacagaa gctcaattta ccagagttac aaaatttaag aaaaggaact      2880
     attggagaaa tttcattgaa aatcttgatt ctgatacatc tttatcaaaa ttgtggactg      2940
     ttgctcgtaa catgagaaat tataatgttt ctaatatacc agttttggaa tactcggaag      3000
     attggattga tcaatttgct tctaaaatat gtcctgattt tacaccatta gatataaaat      3060
     ataaaaattc ttcatcatat aattatttcc ctaatctttg tactgaattt tctattgaag      3120
     aaatggatct ggcattatca attacgaaaa acactgcacc tggtattgat aatataaaat      3180
     ttatagtgtt gaaaaattta ccaattgatg ggaagttaca tttactttca atatataata      3240
     attttttatt tcaaaatatt tttccaatgg aatggcgttt tgtaaaagtt gtaagtattt      3300
     taaaacctgg taaaaatcct tctctagttg aaagtagaag accaattagt ttattatcct      3360
     gtcttcgtaa attaatggaa aggatgattt taaatcggct tgaattatgg gctgaaaaaa      3420
     acaacatttt ttcttcgtct caatttggtt ttagaaaagg tcgaggtaca cgtgattgtg      3480
     tagctctttt aacttcacat attgagctat catttaacaa gaaacaagat gtagtttcca      3540
     catttcttga tgtttctggt gcatatgatt ctgttctgat agatttgctc tataataaaa      3600
     tgatcgattg taaacttccc ttaattattg caaatttttt gtgcaattta ttttctttta      3660
     aaattatgca tttttttcat aacggtgcaa caaaaatgat ccgttacagt tattttggtc      3720
     ttccacaggg gtcttgttta agtccatttt tatataattt attcactaga gatattgttt      3780
     ctattattcc taatggatgt tatttcattc aatttgctga tgataaggtt atttccatca      3840
     gtggtaagaa tagagaagtt attcgtcatt ttatgcaaag ttgtttagac aacattgata      3900
     catgggcgca taataatggt tttacttttt cagtgcaaaa aactaaattt attatttttt      3960
     ctcgaaagca ctctccaatt gatattgact tgtatttaaa taatcaccat attgatcaag      4020
     tttttgaata taaatattta ggaatatggt ttgatcctaa attaacatgg aataatcata      4080
     ttcaatatat tcaaaccgtt tgttccaaga ggattaattt tcttcgaacg atcactggta      4140
     cttggtgggg agctcatccc agtgatttaa ttacacttta taaaacaact attcgttctg      4200
     taatggagta tggttgtttt tcttttggta gtgctgttca atcgcatttt tctaaactgg      4260
     aaaaaattca atttcgttgt ttaagaattt gtttgaaatt aatgaattca acccatacta      4320
     aatctgttga agttttagct ggtattactc ctctccgaat tcgtttcgat gaattaaatt      4380
     gtaagttttt atttcaatgt ttttcaaaca atcatccaat aataaatata ttgaaatctt      4440
     tgtatgaaat taatccttcc agtaaaatat tgagctcatt tatttattgt tctgctcata      4500
     atgtcatgtt agatacatct cctggttttc atgaatacag catgaatgtt cactcttttc      4560
     gacctcatat tgattttacc ttacatgaag aattgaaaaa tattcatcca aatgctcgtg      4620
     cttcttttgc taatttatta tttcagcgta aatttattgg agttgaaccc aaacaaattt      4680
     attttacaga tggatctttg ataaataatg tagcaggttt tggagtattt aactttcaca      4740
     tagcacattt tttcaaatta gaaactcctt gttccattta catagctgag ttaacagctc      4800
     ttcattttgc ttgctgcttg atcaaaaatt gtgccccaaa catttatatg gtgtgctctg      4860
     atagttttag cagtcttcat gctttgaata ctatcaattt taatttcaaa acaagtaata      4920
     ttattttatc tattaaagaa atattaaatg atttgttttg cagaggattt atcataaaat      4980
     ttgtttgggt tccagcacat tgtaatattt acggtaatga acaagctgat tctttagcaa      5040
     aattaggtgt ttctcgtgga ataatttata atcgtgtaat ttatccatcc gaatactttt      5100
     ctaaattgaa acaacattct atggacaatt ggcaaaatac ttggaacgca agtgataaag      5160
     ggcgttattg ttattctatt tgtccaaagg taaagtgttt gccttggttt gatcaattat      5220
     cacttggacg taattttatt tgtttctatt ctagacttat gtctaatcat tatatatgca      5280
     acagtcattt atatcgcata aatatcaaag attcaaatct ttgtgaatgc ggtgagtcat      5340
     atgaagatat agatcatatt gtctttaatt gcactcgttt tagtttgcca agaaaggcta      5400
     ttttcgaaaa aattacaaaa ttgggtcaca atataccaaa ttctatccga gatattctgg      5460
     cgtgtaaaaa tttgaatatt ttaaaaattt tatatgggta ttttaatgag atttcttatt      5520
     ttagttgata cgttttttat atattttcag atagtggacc ttccgtataa tttgtttttc      5580
     ttcggagatt ttacctgttt cagttccagt cacttggata caaaaggacc ctcatgatga      5640
     ttacgacggc tccgatatgg atcaattccg gatgagcctt tagttcttaa gttttctttt      5700
     tgtaatgatt tcagaaaaga taaagaggtt ttgtgccttt ttgagaaaga ttccaaagtg      5760
     aaatcactca aaggggtttt tccctctttc aaaattgaag ttaaaaataa ataaataaat      5820
     aaataaataa a                                                           5831
//
ID   LOOPER1_DM  repbase;    DNA;    INV; 1881 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   01-APR-2002 (Rel. 7.03, Last updated, Version 1)
XX
DE   LOOPER1_DM DNA transposon - a consensus sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element; LOOPER1_Dm;
KW   Looper/PiggyBac superfamily; TTAA; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1881
RA   Kapitonov V.V. and Jurka J.;
RT   "Looper1_DM, a family of Looper/PiggyBac DNA transposons in D.
RT   melanogaster.";
RL   Repbase Reports 2(3), 6-6 (2002).
XX
DR   [1] (Consensus)
XX
CC   LOOPER1_DM belongs to the Looper/PiggyBac superfamily of "cut and
CC   paste"
CC   DNA transposons. This family was active in a recent past (several
CC   million years ago). It has 16-bp TIRs (one mismatch) and its
CC   copies
CC   are flanked by the 4-bp TTAA target site duplications.
CC   The consensus sequence was reconstructed based on alignment of 5
CC   copies.
CC   LOOPER1_DM encodes the Looper1DMp transposase (positions
CC   505-1542).
CC   Looper1DMp is closer to Looper/PiggyBac transposases identified
CC   in
CC   the human genome than to the PiggyBac transposase found in moth.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(505..1146,1150..1209,1213..1527,1531..1578)
FT                 /product="Looper1DMp"
FT                 /translation="MEDISTVLEKNLEGILERGESIEIDLLENTVIEGCEP
FT                 DSCVVVDSCLEKIDPKTLKWRTRPFVAPESIWEDDKTFDVGEIKTPVEFFY
FT                 TLFDTQLIHLMARQTDIYSLQEHGIELKCTDEEIKRYIGILLYFGVLKLPQ
FT                 FRMAWSKDLKITAITDSMPRGRFKKIKQCLHFNDNAKQLKKGDCNYDKLYK
FT                 IRPLLRILKENFGKTNAGRASKCRXANNCIQRYVFNFLLNLLYFYXLLLLQ
FT                 VDPRLYNPNLINGVLKLFTRAGISGLVYDFTLYVGEGTSPSYGLGISSYVV
FT                 LYLAESLPKDKNFKLYFDNWFTSVILLISLKEIGIFATGTVRMIKLNIGXF
FT                 LEKEDVADCAKLQHR"
XX
SQ   Sequence 1881 BP; 636 A; 292 C; 365 G; 588 T; 0 other;
     ttaacccttt cgcgcccaac gttgcttgtg agcaatttct atgttttcag agctaactgt        60
     aagcgtgcct tttgttttta tctgctcatt ctttatgata acggtgcttt tatgtgtcta       120
     ctctaaatat gaaaagcaaa aaacgcattt ggagattatt tgcagaaaat atttgcaata       180
     aacagcacgc gcatcacaat aattattgtt tcgatattcg gtggaacttt tggaattagt       240
     aatttacttt tataatactt taaaaagaac ctaaagtata aacaaataat tatttagcaa       300
     agagttaaca agacagtgat atagtcaaac ttagttaata gtgaacaata agtaagtaaa       360
     taattttcta agttgcttgt gagcaacctt gggcattcgt ggtaataatt ttcaccgaaa       420
     gtgaaaggtt tgtctaacga agaaattgaa cgggctttaa acttcgattg ggatatttct       480
     actgacgaag aatgtggtga tgagatggaa gacatttcta cggtactgga gaagaattta       540
     gaaggaattc ttgaaagggg agaaagtatc gagattgacc ttctggaaaa tacagtgatt       600
     gaaggatgtg aacctgactc ttgcgttgtt gttgacagtt gcttggagaa aattgatcca       660
     aagacgctaa agtggagaac aaggccgttt gtagctccag agagtatttg ggaagatgac       720
     aaaacttttg atgtcgggga gataaagacg ccagtggagt tcttctacac actttttgat       780
     actcagctaa ttcatttaat ggcaaggcaa actgatatat atagtttgca ggagcacggt       840
     attgaactta aatgtactga tgaggaaatc aaacgctaca ttggcatttt attgtacttt       900
     ggtgttttaa aactaccgca attcagaatg gcatggtcaa aggatttaaa gattaccgca       960
     ataactgatt caatgccgcg tgggagattt aaaaaaataa aacaatgctt acatttcaac      1020
     gacaacgcca aacaattaaa aaaaggggat tgcaactatg ataaactcta caagatccgc      1080
     cctttgctca gaattctcaa agaaaatttt ggaaaaacta acgcaggaag agcatcaaag      1140
     tgtcgatgag caaataattg cattcaaagg tacgttttta attttctttt aaatttgctt      1200
     tatttttatt aattgctttt gttgcaggtc gatccacgct tatacaatcc aaacctcata      1260
     aatggggtct taaaattgtt tacgcgggct ggaatatctg gattagttta tgattttacg      1320
     ctatatgttg gagaaggcac ttctccttct tatggcttgg gaatatcatc ttatgttgtc      1380
     ttatatttgg cagaaagtct tcccaaagac aaaaatttta aactgtattt tgataattgg      1440
     tttacgtctg taatccttct gatttcgttg aaggaaatag gaatctttgc aacaggtact      1500
     gtacgtatga taaagttgaa cattgggtag tttttggaga aagaggacgt tgcagactgt      1560
     gcaaaactgc aacaccgatg accaaatgcc ttacatgcaa agtccatctg tgctgcaata      1620
     acaataaaaa ctgttttttt gtcataccac acttaaattg tcattataaa gaaaaatatt      1680
     tcatattctg tgatttataa aaaaaaaaca atgcttacac atcactactg cccgacgttg      1740
     ctcacaagaa aactttcgct accgcccaaa ctaatgggcg tggcatacta aaattttgct      1800
     aaatttttct aaaaataaat gtaaaaacat taatgataaa acaaaatttc acgggtaaaa      1860
     agttgggcgc gaaagggtta a                                                1881
//
ID   LTR-10_Hm_I repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-10_Hm_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1280
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           734..279
FT                 /product="LTR-10_Hm_I_1p"
FT                 /translation="NEETRETSQSVENHDTDCTLSARTAIDNYRGIPSMVE
FT                 ARSRPQRQLSNEWKIAIFFPRLNPKPYKCKSTVYTAHISKKNIQYITRRNA
FT                 PRIQNNKNNVNESLFLTWYGILKYVDNTKLSCQKAELSRDNNSSLMLFPEF
FT                 ERVEIFRAHSTGT"
XX
SQ   Sequence 1280 BP; 299 A; 257 C; 302 G; 421 T; 1 other;
     atactctccc cctttgggaa aaaaatgtgc aaaacagaat ataaaataaa caaaataaaa        60
     tattatgcct atgaactaaa ttgatccaca agttgttttc ttcgcccgga cytcgtaact       120
     cgatgcggcg tgttgctgtc gtcggctgct gcgcttgcgc attgtttcag tattgttgtc       180
     gttctgctga tggtgaattt ttgtgttcgt cgactttgtt tgcgatgaag gctggcgtaa       240
     gtaggtcaat gaccgtaatt atgtatcgat tggtactacg taccggtaga gtgcgcacga       300
     aagatttcaa cccgttcgaa ttcggggaat agcataagtg acgaattgtt gtcacgtgag       360
     agttccgcct tttgacacga tagcttcgtg ttgtccacgt acttgagtat tccataccag       420
     gtcagaaata atgactcgtt aacattattc ttattgttct gaatcctggg tgcgttgcgt       480
     cgtgtaatat actgtatatt ctttttcgaa atatgcgcag tatatacggt tgacttgcac       540
     ttgtagggct tcgggttgag ccttggaaag aaaatcgcaa ttttccattc attgcttaat       600
     tgtcgctgtg gacggcttcg ggcttcgacc atgcttggga tgcctcggta attatcgatg       660
     gcggtgcgtg cggagagggt gcagtcagtg tcatgattct ctactgactg agaagtttcc       720
     ctagtttctt cgttctacca tacttgtatt tatttaaagg cgcttaaaca ttgatagtcg       780
     taatttcaga gtgccagaat taattatcct tttcggatgt aataatcctg taatgctgtc       840
     gactaatctg ttatcgcgca tatccactaa ataattattc cttagttttt ttaaaaatcg       900
     atgccttcgt aaaacttggt attttccatt acttcatcag cttttatttg atttgcatgt       960
     tcgatcttgc ctcgaaaatc tcattttatg ggtttggtgg tatattgcct cttgaaattc      1020
     taaccggtga gacccgcttg tgggaagccg attagaatgt gcactcacca aatctctgaa      1080
     gatttgcgtc gggcagtcgt tgggttgaag tccggtttac gtggtaatca atgtagcacc      1140
     acgggagttg tatggatcat tgcctcggtc tcgtcgatag cttcgggctg aagtctagag      1200
     gatcgccaat gtggactgtc acgtcaggct gcaactcgca gggtaccccc cgtcggggta      1260
     cctttcgtcg gggtcaccaa                                                  1280
//
ID   LTR-10_Hm_LTR repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-10_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-202
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 202 BP; 67 A; 27 C; 36 G; 72 T; 0 other;
     tgtgggctac gggtattgtg gcgatgttaa taagacgaga ctttatattc aactctttta        60
     ttatatattt aatttggtta tttatacgct acaaaacaat agtggaacat tatttcacaa       120
     ttgcatttgt agcgaataaa ttcaggttgc tgatatagcg tgtttataaa gaatataata       180
     agactagtgc aataccccta ca                                                202
//
ID   LTR-10_LMi  repbase;    DNA;    INV; 1676 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1676
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 115-115 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 1676 BP; 586 A; 348 C; 284 G; 458 T; 0 other;
     tgtaacactc ccctcactaa ccggttgatt aatcctgtga cagattaatg ttaaaattga        60
     cccgtgtgtt gcctacaaaa taaagttgga caaggctatc tttaccgaaa aattattgtg       120
     caaacgaaaa ccaactagtg agggaatgct gccacaacga actaccacac cagatagccc       180
     gttcctccta ctctactaat tactaattga actgatttaa ttatggaaca atctcactca       240
     cacacgtatg tattgcaaat tataggaagt aacaaacaat gaaacagtaa aaaacattaa       300
     taaattaaca cggtcgccag cccaatgggg cactcagggt gtgttgtaat taaccacgac       360
     aattatgaat gggtaatcac acacgttagt gttgcacaac agaaggttgg caaacacttt       420
     tgcaatcgaa taacttttac gaaaaatgat gctttggttt tatcagttta taacaagaaa       480
     gaaaataaac cacgtaatta ttatttgatt aaactggatt agttcggaaa cagtgttgga       540
     tcggagacca atgttgcact caattatcaa cgtcccttca ctaacactca cctgcatgag       600
     aattacacag taggcagcaa aacactcggt tggcagaata attaatgtta agattaccag       660
     gaagaaatta ctcaaaatga cttgcaacta gatcacagat ggacaacgcc gaaatacgaa       720
     ccaacatagg aaatcaactt gacacataaa ttttacacca atgaaatatt aaatagtaat       780
     gaaccaatta atttagaatt aatatataat tttgtttagt tacttaattg tgccaacttt       840
     gttttaaaga aagcaattct ttatgtccaa aattgtaata tgttgaaatt agctttaaaa       900
     ttcaaacttt aattatttaa attttatagt ttggcactga atttaatatt cttttcactt       960
     tcaacgacac tcgggaaact tctggaaagg ataggaccct acttggtaac aatgtcttag      1020
     gacaatgacg tggtagaagt tctttaaaat tttggttatt attaagaaaa atagtttctc      1080
     aagcacaaaa ctgggtaacg ccttacaaaa tgtctaaact ctgtgtggtc ggaaattatt      1140
     ggagcggtct tacattgcgt cctcgttgtt gaagagcagg atgcgccgac tccgacaatg      1200
     ctgcaggtca caatacaggc acaggtccaa tccagtgagc aatttgaggg cagaatcttg      1260
     acatatacag atgaactgcc gtgtgccccc gctcatattg gaaacatgtg cgctaattat      1320
     ggaactccgc caacaaggcc tggtgactgc aaagagcgag gcgctgcacg ctcccgcgca      1380
     cttgctagcg tccgaactgt tcaaacgaca gagctcgact ccctctccga ctccacagct      1440
     actactactg ctccctctct gttgctccaa agaccacata ccacacacac caaagatgtt      1500
     tcctacttcc ctatcggcga ttacccagat acacagataa taaattacat aaattcacat      1560
     aaacaaacta aacaaaacta caatatacat cagttatggt aaaagctata acagaaccta      1620
     catacattta aaatttaata catatttgaa atacacatct ggatgctaac gtcaca          1676
//
ID   LTR-11_Hm_LTR repbase;    DNA;    INV; 732 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-11_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-732
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 732 BP; 281 A; 57 C; 140 G; 254 T; 0 other;
     tgttagcggt agtattcatt atgagtttat agtaaaaatg tgaatatgat taattagaat        60
     gaaacgaaat gtgtaagttg tgtatttaaa taaagagaag ttgttatgat attattatga       120
     ctgaagataa aaatataaat gaagtacttt tattaatata taataatgtt agcggtagta       180
     ttcattatga gtttatagta aaaatgtgaa tatgattaat tagaatgaaa cgaaatgtgt       240
     aagttgtgta tttaaataaa gagaagttgt tatgatatta ttatgactga agataaaaat       300
     ataaatgaag tacttttatt aatatataat aatgttagcg gtagaattca ttgagtttat       360
     agtaaaaatg tgaaaatgat taattagaat gaaacgaaat gtgtaatttg tgttgaagtt       420
     actatgttat gttatgttat aaatgatggc agcactgaaa ctatctttat tgtgaattat       480
     gaatatgaga tacatccggt aagcttagtt ttggagggaa attgtaacct ataaaaacac       540
     cccaaaaaca gaaatgagca cagtcttccc gacgttgtaa tactgccagc aagctctaag       600
     caaacgttat taagtgatag tttaagtgct gagtgtttaa gtgtcagtgc taagtagaaa       660
     gtgttcataa taaagcgatt taaaaagtga aggtttataa ttgatctacc cagtgaatag       720
     atgtttcttt ca                                                           732
//
ID   LTR-11_LMi  repbase;    DNA;    INV; 1302 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   23-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1302
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 116-116 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 1302 BP; 372 A; 175 C; 230 G; 522 T; 3 other;
     tgtggcgtta cctcttcttt gtttgccaat ctgcttccca cttgtcctct acatatacgt        60
     agttttgggc aagttgaaaa gtttatgttg ttggcttgtg gaagaagggc ccacaaaaat       120
     taaacaaacg tgaaactata aatgcacatt aatatgtact catcttggtt ttgatggtct       180
     cttctttgtt gttgatctgc ttattcttct tttattcttg gccttgcgtt gtgttttctg       240
     ctagagctaa aacttgtaaa atcttgcagg aagttactac tgttcttkaa ataatacact       300
     tcacgttaag ctcttcaaaa ttttatttta tatagcaagt ttgcttttca caaacaattk       360
     atttctacaa ctcattacaa aagcgtctgt ctccctccac atccaagcag acagtgtcag       420
     taatggcaaa ctttgtcttc cactcctctt tcacctctca atacaaatta gtgtcactaa       480
     aataaacaat tttttaagac tgttgaacac agaaaaataa ttacgtaaat aaagtttata       540
     gtttaagtat tttgttttct tattttaaat cggtgtgtgt tgtcttgtgt gttcgtaaat       600
     gcattttgaa atgtgttgtt aacatgtgtt ttattttgac ttggaaaaat ggcgkcgttt       660
     tgtttatcaa cagaaatata atgttttgac actttgtgtg acagtttagt cgagtttgcg       720
     tgtgttatca aatggtgtgt tattttattg aacgtatttt ggtgtagcta tttcgtttgt       780
     ttgtgatcaa catttacctg gatttgaaaa gtaccgttat atttatttat ttggtaatta       840
     ctcgtgttat tagcattaat tgcgtctgtg agagcaatat ttgttgtcag tgcattataa       900
     tgattctagt gaggtaatag gttttgttgg cctattttta tttataatat ttgtttattt       960
     gcatcacatg ccaatgacga ttgcatcatt aaaaccaact aaacattaat aaacaggttt      1020
     gtgatgtatg tgtatagtag gtaaatgggt ttcagaatac tattttatat attatgttgt      1080
     ttatggttac taaaactttt ttttgtagtt gaataatata aatcgtttgc attcgagttt      1140
     tagtaaaggt attataatga aaaatagctg attagaacgt tttatatggg tactaatatc      1200
     actttatacc aatggtatag ctttttggga cagaaatgta ttaagatttg ggactgaact      1260
     attgggtaga aatatagggt atgcatatat agaaatgtta ca                         1302
//
ID   LTR-12_LMi  repbase;    DNA;    INV; 1146 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   23-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1146
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 117-117 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 1146 BP; 310 A; 218 C; 228 G; 390 T; 0 other;
     tgtaaggtgg ctactgaatg gaaatttcct accttaagtt ttgggattat atatgttggc        60
     aacaacatat atataaacat ctttgttggg tccgcaagga ttatctttgg cggccggtag       120
     gcggggtttg ctgagtgtag ccgcgggagt cggagagtag tagcggagcg tgacggttgc       180
     actggagctc gcggtggaca cagcccggag ttcttcatga tgctgctaat tttttggtaa       240
     tttactttaa atgtttttcg cattgcgcaa ggtcgctcat ttcatttcac tttgtatcac       300
     tttccattca gtaggaacct atacacaacc ttgattaatt cgtggctcgt cactgtaatt       360
     gttgtaataa cgaggatagg gcattaacca aacgtaataa taataaaaaa gcagttcctt       420
     tcactttttg acattttgac tttttataat taatcctttc ctgagggtag ggctgcatcc       480
     ctattttaga aactgcctca ttgcacgact tcgcaataat atgcacattc ttcatttttt       540
     atagtttatg ttactcatgt cgaatttgct gattgctaat tttctaattt tctttaatac       600
     agatttattc agtttgattg gtttaatttt gtttgtgatt attcttgacg ctgtaagtga       660
     ttgtaagtta atggtaatta agtacattgt aacaagtggg tgacatgaac gatatgaagt       720
     gaggaatgtg tgttggtgtg aagcgaggta tcacttccct ttttacaaca aaataatatt       780
     tcttgcagac tgattgtata gtaatactaa gacagggcca acaagtacaa cacagtacga       840
     cattctttta ttgttctcga aagtgactat cagccaacca agattttgca tctttttaat       900
     ccttctaatt ttgcagtcag atagcgtaag tttcgacgtg cccaaacttg ccttacgtag       960
     gtcagcatta cgttgcgcac taattgtcaa gttactctcc tagtagtatt gcagtcagat      1020
     ccataatttt agtagcccga tacgatcttt catttttgta gacccctgtt agtactgaag      1080
     gcaacacaca cacacacaca cacatattaa gtagccccgt cacacacacc aacctgaccc      1140
     gttgca                                                                 1146
//
ID   LTR-13_Hm_LTR repbase;    DNA;    INV; 981 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-13_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-981
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 981 BP; 281 A; 179 C; 169 G; 350 T; 2 other;
     tgtcgccgcg atccttattg tgggtacata ataatattgt cgatatactt atttaaattc        60
     cttttacgaa caatgatttc attgtaatgt agttactttg aattctacta ttttatgcca       120
     ttattatgag tttaattatg tttttaaata ttacattgaa tttagaaata aaataagagt       180
     gaataaatac tgtgaatatt aaataataaa ttaatagttt tgtatttgtc acctacagat       240
     cacgccactt taggcgcgtc atcgtttacc atagaatgac tcatagtcaa cgttatataa       300
     agggccgcac gggcattgta cgctgggtcg aggctctacc acggctcgga gcactacttg       360
     tgctccaccg ctggctaacc tcgaccatct taattataaa tgtagttaag acttatttat       420
     aattaactac ttggagtygr ggctctggtg tggtcagatg cgctactcgt gctctgccac       480
     ataacctcga ctattcggat aattgattat ttagctaatc aattattatt gtagttacga       540
     atgtcgttaa gacctatttg tagctatact aggctggagc agtgaaaggc gagcgttagt       600
     tactgtaaag gggcccctga agcctacaat tgtggtcaca agtccacggc actgctccga       660
     gcttcacaca tcatttaaag agtaagaaaa cctaacatta tttatttacc cacctatatt       720
     gttatttatt acacttacaa ttataaccct tcataattgg tttactttga aatcgttcag       780
     ttaaactttt agttattatt tggtttattt atttactcaa gatttattta tttgttcact       840
     tcactattta tgttaaaatt accttgctaa aagtatttgt acatgtgtta tgtgttcaca       900
     tacgagtgga accaaaggcc aggacatggt cggaggttct actcgtttat tttttatgcc       960
     tattaccccc ctgctccgac a                                                 981
//
ID   LTR-13_LMi  repbase;    DNA;    INV; 593 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-593
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 118-118 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 593 BP; 195 A; 123 C; 82 G; 193 T; 0 other;
     tgcgaggtgt ccgcacgacc aatattttat aaacttgttc ttgtaggccc cgtgcttgtc        60
     gcacagcctc gcaacagatg gaaatttaac aactttttcc aaattccatc taaataggca       120
     tactgatttt aaatgccaat ttaaatcttc aaaactgtat ttattataat ttattttaca       180
     atctgttata tatgtaggct atatgttatc ggttctgtga cctcctatca actaaaacaa       240
     aatccgttcc ttttctgttc tttttccctt atttattctt ttgcttcaaa tcctcagtgc       300
     tcctaaaact ccgtacggca ttgcagtttc cttgccactc tgtgtgacgt cacataaccg       360
     cgcggccgca cgaagccaaa ggaacacctc ggagaaggaa aatataaaag aaaaaaagaa       420
     cagaaaatat acaataaaat tacttacact aaagttaaaa ggaaacaaaa atatattaaa       480
     atttcctccc acctaacacc tatttgactc gtacttgttt gtttagaggt ttaaatgtaa       540
     ggttccattt ttttaaagac aaaaaaattt caaaatatgt ctgtaccctt aca              593
//
ID   LTR-14_Hm_LTR repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-14_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-250
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 250 BP; 90 A; 32 C; 35 G; 93 T; 0 other;
     tgtgaatgtt attttatagt agtaattaaa acacactgag tttctcgtta aagaaacgac        60
     atttaatgtc tattacttct aacaaatttt tatgttacac gtgttcagca aaattaatta       120
     aaaagatcta tgttgacagt tttgtatagc ttaactattt gtacagatta tctatttcaa       180
     accatagacg tagttacgtc tatggccagg aattaaaaat taaagagaat tacatgtaat       240
     tgtctttaca                                                              250
//
ID   LTR-15_Hm_I repbase;    DNA;    INV; 4956 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-15_Hm_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4956
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3203..3865
FT                 /product="LTR-15_Hm_I_1p"
FT                 /translation="IKYTCIWIYLXLSELLCLMYXFRFSFRAIAPXQXGQI
FT                 APVQDGQIAPVXDGQIAPVXXGQIAPVXXGQIAPVXXGQIAPVXVGQIAXV
FT                 XXGXIAPVSVGQIALDLSWADCPSFSWADCPXFSWADCXSFSWADCXSFSW
FT                 ADCXSFSWADCPXFSWADCXXFSWADCLSFSWADCXQFQLGRLPXVSVGXI
FT                 XXSFSWVDCPSFSWAXCCQXXXGRLXXVSVR"
XX
SQ   Sequence 4956 BP; 1546 A; 716 C; 1046 G; 1459 T; 189 other;
     caaatgtcag aagtgggatc caacacctaa agataactgg tgttgttact acgcccaaag        60
     cagaccaacc ggcgcacgac gaccaacacg gtacgtctgc gacggtgatc gtagacagaa       120
     tagacgcgga gataataagc ggaagcgatc acagcaaccg gaataaccga agttgtagtc       180
     aaaagcatag ttatggtcgc cgtccaagta gcagaaggta cagtcgaaat cgcagaagac       240
     gtgaacgtga ggaacaggga cgtctcagca ggcgtaggtg cgtggtagca ggcgtgcccg       300
     tagtagtgtt caacaaagca acagcgacca tgtttataag ccgaagcgtg aacagtatgt       360
     ttgccgctag cgtgacagcc gtgcagatgr ctcttctaaa gaagacaatg aaaatcgtct       420
     tccttgaagt aagcatcgtt atgaaggtac gagcatttta ttaatagtaa cagtaatatt       480
     aatcatcaag tagaagtgca gaagcggcac aatatggtaa caaaatttta ataagatatt       540
     aagatkcaaa agtcaaagta gtcgctataa ttaaagtctc ctttataaca aatctaacag       600
     tgtgctaaat gtcatcttat agtttactta gttaaagtct gtagaaaagt gaatcgcgta       660
     aatgaactaa gtgaaaatgt aatcraaaaa aaaagtaata caattaacag tgacgtgttc       720
     tcagtaaacg gcattgtttt aaattctttc attaaactag gaagaacttt aagtgaaata       780
     aaaggtcagt agtatattaa gtgaaataag gataaaacgg agccttcgat aggttttggt       840
     aactcgacag ttacacccgt agatagttat gatatttaaa ttattattaa tggcattttg       900
     gcaataacgg aagtgcttag tgtctaatga atatttactt aggttatgct gttacagaac       960
     aaacatttat aatgtttawg acttacgata cttttaaaat aatagctaaa taaaattata      1020
     atacccgcag tattatcatt tagtagaatt gaacaaaaaa aaagtcttat aaagtcaaag      1080
     catcaaacaa cggtttawca atggttagtg tatagcaatg gtagatgtaa taaacttata      1140
     gacgtgtaaa gaatattttg ttttataaga attaaatgaa tttaacgata aaaatggtaa      1200
     acttattcta aaataatttg ttgaagacaa aaagaaataa gctttcaaaa tatagttaaa      1260
     agatagttat gtgtttcaaa aattataaaa gtaataatag taatttaaat aagcagaccc      1320
     aaacttaaag taactwagaa atagaaaakg aaaaaaataa taagtgttaa tgtagatatt      1380
     tcattaaagg aatacatatt gaaattgttt tgcttktaat tcaagagaat taggtggtga      1440
     tctagcaaat taaattaatt gatattagtg cggtagtttc tgcgttatgg cgctttagat      1500
     tttattcact ggtctaaagg ttaatttggt gacatattgt attcattgcg ggcaactttt      1560
     gaaaaacgtg ttaattcctc gagtttctcg ctggtagcgc cagattccat aatgtaattg      1620
     gcacattgaa tagtatggct agtaaaatga gccacgcgga tgttttaagt cttaatccag      1680
     ttttaaatga taaacagaac actgatgtag tcatttatgt ttcaagtaaa ttcaacaaag      1740
     tgcaaaaaaa tacgtacggt tatgtttata ttgtgtttat cacaaaactg atgcaaaacc      1800
     taaaagatta gtaataaaaa tagttaattg ttgtgaatca ttgacatatt ttcctaaact      1860
     atgaaataat acaaccagtt agaggaacag atgctaatta tgtaattaca atataaaatg      1920
     ttatatttta tatttactac ttcagttaga ctgaccagat agttgactta taagacagac      1980
     atttaaaaac acgaattacg tgttaagcct attgttaccg ttatctctac tccacgatct      2040
     aatgagcagg tggagaggat aatmrtatgt tccagtagtg gtttgaatat aagaatagta      2100
     aggcgagcag cgtcatgttc tgttggactc tcatggctaa acaaattgtt tatttgtata      2160
     ttttcgagct tattatcaaa tgagctactt ttatatttta aatttgtaca atatagaaag      2220
     taaatatatt tgtcagagta ttatttacaa atcadggtgt cattaattat tagttataat      2280
     tgaattgagt ataacagact gtttagaggt cttagaataa aagttataca ataggaaata      2340
     gaatacrgtg ttgctggtgc tagttacaag tactttttat atagtaaatg aatctactta      2400
     atttaaagtg tcattactat tatwataaca aacccttttg atgtataraa aagataataa      2460
     atagaaatat tctatttagt attgctagtg ctgtttaata cgtactttaa ttcaatcgtt      2520
     agcaattgca gacaataatt gtgttgttaa ataatattca taataaagga atcggttgaa      2580
     cgccgactga ggtttaaaat gtgagtagca actctgatag tcttatatta aagtcattaa      2640
     gcgtagatat aaagaataaa atagagaawc aattcgtaat aaaattataa atgaagtatt      2700
     aaaaaarggg gtcaaatata taatagcata aaagaaccgc cgtgtaagta ccaaaaygaa      2760
     tttktcgtta rdtttcgtaa taaaaaggtt acaagtttkt aacaaaaaaa caaatgacat      2820
     ttaagatctt ctcccaakta caaaaagtgt aggggtgttt ataaagcaat agtggccata      2880
     gataaagwta gagcgtgggt agtgttgacc atctttcaga cgatagtgat tctcaagcca      2940
     aatcgggtag tcatgatgat aacgaatgtc agtctcgaat tatttaattt aatgaagtct      3000
     tgtataagtt gataaatagt ctagataata ttttaatact attaaataaa ttgkatrrak      3060
     agrtwgatrr mkrtrkrcdr ggswrgtdwg tdgkrgccmg tggcgtttgg cgctctttyt      3120
     ctctgaytgy cccgctaggr ataaagcgtg gmgttaagtg aagttaaaag tatagtatac      3180
     agtgtatact tatgtcamgt agataaagta tacatgtata tggatttatt tamttctaag      3240
     tgaattgtta tgtttaatgt atrgttttag atttagtttt agagcaattg cyccagytca      3300
     agabgggcag attgccccag ttcaagatgg gcagattgcc ccagtwhaag atgggcagat      3360
     tgccccagtt haagwtgggc agattgcccc agttbhagwt gggcagattg ccccagttbm      3420
     agwtgggcag attgccccag tttmagttgg gcagattgcc chagtwdvag wtgggyagat      3480
     tgccccagtt tcagttgggc agattgccct agatttaagt tgggctgatt gccctagttt      3540
     cagttgggca gattgcccth dtttcagttg ggcagattgc cbcagtttca gttgggcaga      3600
     ttgccycagt ttcagttggg cagattgccy cagtttcagt tgggcdgatt gcccynrttt      3660
     cagttgggcr gattgccytn gtttcagttg ggcagattgc cttagtttca gttgggcaga      3720
     ttgcckhcag tttcagttgg gcagattgcc tycagtttca gttgggyrga ttgbcyccag      3780
     tttcagttgg gtagattgcc cyagtttcag ttgggcargw tgctgccagw ttcrgtydgg      3840
     tagattgtsc cyagtttcgg ttaggtarat tgtmccagtt tcatgtrgrc agattgtccc      3900
     agtttcatgt ggacagattg tcccagtttc rkktrgrtag attgtvccag tttcatgtgg      3960
     rcagattgyc ccagbttcat gtggrcagat tgycccagyt tcatgtgggc agattgcccc      4020
     agyttcatgt gggcagattg ccccagtttc aggtwaacaa attgccgcaa agctgatcac      4080
     ctaccaactt gggccaagta gacgcgcagg tagctgcygc gwgctaccty ragcagacca      4140
     tcaaygrtga carcatcayc tttgacyccg traggtgcct agcagrcttc tgccgccacg      4200
     tttcacggar gattctaatc ttcgctggct cgcagccagt gggagtcgag gaggagcact      4260
     gtgaggaggg acatattgcc gcaggttcag gtkggcarat tgccgcaggt kaaggtraac      4320
     agatttccgc aggttaaggt tagtagattt ttgcaggttt aggtgagcag attgccacag      4380
     attaaaatgg gcagattgct gcagcttaaa atgggchgat tgccgcagtt taaaatgggc      4440
     tgatggccgc aagtaaaggt ggacagwttt ccgcaggtta aggtgagyag atttygcagv      4500
     tttagdtggg cagattgccg chghttaaaa tggkcagatt gccgcarbtt aaartrgkca      4560
     gattgccrca gbttaarrtg rrcagattkc cgcagbttaa rdtgggyaga ttkyhrcarm      4620
     ttaaaatggg cagattgccg cagcttaaaa tgggcagatt gtcrcagbtt aaaaygggca      4680
     gattgycgca dbttaawrtg ggcakattgc cgcaggttaa ggttagcaga ttrctctagr      4740
     ttcaggtggg cagattgacc caggttacgt rggtaaaaat tggccctagt ttaacatggc      4800
     agattgcctt taaatattgt ttgtgaaagc tgtaaatyat ttttgtaaga gacattrtta      4860
     cagtcaatta tgtaaragtt atgaaccata gttattctyt tttkktttkk tttttttgga      4920
     aacacgaggt cgtgtttcgg tgcaggacgg ccgaac                                4956
//
ID   LTR-15_Hm_LTR repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-15_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-332
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 332 BP; 117 A; 32 C; 70 G; 112 T; 1 other;
     tgtaagacaa ttgtcagtgt gagggtattt tacagaaaat aaaataataa tacccacata        60
     attatttata aaagaggaag ggaacggcta taaaaagtga cgtttttgaa ggattgagtc       120
     agtacgtcgt tattctgcct gtcgtaaggt gtaaaattgt gacagtgttc aagtatttaa       180
     aatcagtgtc attgttggaa ctatgcgttt taaaacgtgt ataagtgtaa agtgttatat       240
     agaaacagtg ttagaagtgt gtatatgtaa agaggaacaa taaattgtgg ttattaagta       300
     ttttvttata cttagcacct gacattttta ca                                     332
//
ID   LTR-16_Hm_I repbase;    DNA;    INV; 1390 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-16_Hm_I.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1390
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1309..1070
FT                 /product="LTR-16_Hm_I_1p"
FT                 /translation="QCLLIVDVAKLEGGAVRELPPXLITSRDKAAESDFVL
FT                 VLGAAQCAPAPSTSTYTTPTQSCRYPWDYKHQSSNIAEXLLEV"
XX
SQ   Sequence 1390 BP; 422 A; 304 C; 257 G; 377 T; 30 other;
     tatttctaac acggcctctc ctgacatggc agcgtcccga tgccttcctt cgtttcatta        60
     gaaggaccag cttcatcagt attagtagag ctcacattac cagtttcgtt atgatctgtc       120
     atatgaaatg gaattagtta ttgtaataag taacgttast agtaattagt ttcaaatata       180
     attgtcagtt tgtatctgaa atctgtcctt gaayatgtat ctttgaactt tcgtattaaa       240
     caatgacaca agaatgaaaa tcaaatacgc gtggtaggat tttacttcag atctcttctc       300
     acgcaaycgg atactagatg cattagaatt acatcagtct cttgcgagtc aatccgacac       360
     ctacaaakta amcattaact cagaaaymaa atagamatag taggattttg brtcggatct       420
     sttcccackc amccgaatac taaatgcaty aggatttaca ccartctctt gtgagtcaat       480
     ctgacaccta cagaggtwta cagtaactaa aaaawkcaaa acaaatataa dctgtagact       540
     ttggcatcag atctyttctc acccwtgtga gtcactctga cactacagam gtaagaccgg       600
     acttactggg tctctagtca rcctgggccc cacygacgca accacatgcc tccttactaa       660
     cytttagtta ccgtacacac agcactgcgc aahacacact aaytaaaaat tacataagca       720
     ccatgtacaa caaaaacatg gtgagtacac aaatagtttg atacatagtc aagaacaaat       780
     agatactaaa tgggaaaact atcaatcaaa gagaacagca catgtatctg gtgtccattt       840
     tcctcgccat aataccagcc atgcatgtca taccatgtac ctggcagcgg ctattatttt       900
     attttgdctc ggcctaacct gaccacgagg aagaggatgt ctaatcttta cagttatttg       960
     gtaaagcatg taaactttat cgatttcgtc acaccacgtg tcgacgtcat gaatattggg      1020
     gcaaaatcgg aaacataata ttggtttgat ctcaccgtga aagagttcac acttcaagta      1080
     acygctcagc tatattgctc gactggtgct tgtagtccca cggataacgg cagctctgcg      1140
     ttggcgttgt gtaggttgat gtcgatggtg caggagcaca ttgtgccgca cccagcacca      1200
     acacgaagtc agactccgcg gctttatctc gcgaagtgat tagtadggga gggagttcgc      1260
     gtacggcgcc tccctctagt tttgcaacgt caactatcag aagacattgc tatgtaactc      1320
     tacccgatta cacaaaaata ttagaaagat caggaatggg atggcttagt aactaaggct      1380
     tctatcccac                                                             1390
//
ID   LTR-16_Hm_LTR repbase;    DNA;    INV; 251 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-16_Hm_LTR.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-251
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 251 BP; 89 A; 39 C; 46 G; 77 T; 0 other;
     atatattgtt agaaactatt ggaaatatta aataaagtgg gaaaggtaat gaattaaaac        60
     aaggcttcaa ataattatta aacaaccaaa gggaattatc tagcagtcta ataacaatat       120
     ctggttctaa agaatccatc gggcagagtg acgttagcga tccttttctt tcggtcgtcg       180
     ttgacagccc ataaaagtgc cagccagtaa ttagagtcgt tcttatataa cctctatggt       240
     cattatttga t                                                            251
//
ID   LTR-1_LHu-LTR repbase;    DNA;    INV; 1431 BP.
XX
AC   .
XX
DT   30-MAR-2012 (Rel. 19.02, Created)
DT   30-MAR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Putative LTR from the Linepithema humile genome: consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-1_LHu-LTR.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1431
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 460-460 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 4-bp TSDs. TG..CA ends indicate it
CC   is a LTR although no internal portion is found.
XX
SQ   Sequence 1431 BP; 302 A; 434 C; 286 G; 407 T; 2 other;
     tgtaacggtg cagcccgcaa gctgcatcgt tacggctacg gaccgtccat cgtccgtagc        60
     ccaccaaggg cgcatcgagc gccgataaat ttcttatcgt aacaacggcg gtcaatcgcc       120
     gaaaatcccc cacacccgac cgttccgaaa ttccgttttg tggggggctc gccgccgaaa       180
     ccgccgatgc ttgccgattc gaaaccattc ggctgccagc cgggtataaa agaggcccgg       240
     ctgwacgtct tctcaccaga tcctgttcgc tgcctaggca gcgaacaatc ctgctgcgag       300
     cgttctcgta gtccggccga gagtactcgg attctatgcc ttattccagg tacacgagcg       360
     ttctcgatac cgtttctatc tccgatacga gcgttctcgt ataccccgtc gagcgtactc       420
     ggctcctcca ggcatcgatc ttcgtatgca gggcattccc tcatacttag tcgagtcgcc       480
     gctctgaatc cgccttcgta cgagtgttct cgtacgtccg ccgaccagtt tcggcctcac       540
     agcctctagt gcgagcgtcc tcgtactccc gtcgagcgta ctcgacgtcc tgttcctaat       600
     ttcgcgttgc cgcgcaccgg gattcatccg cagaatccat tcagcgggca aactgcgtcg       660
     accaatccgc gccgtcgagc gacccgtcac gatctacgat cgaacggact cgcgataccg       720
     tcacgaacgc actcaccgac gagcgttgcg ttgtaccaac cgttgcgaca cgatcgcccg       780
     cgcttgcgct ctctctgatc gcaccgagac gcctcacgtc aaactttaat aattcgttca       840
     ccgttgcttt aaataattat ttcgccgttt gcttaaataa ttatttcacc gtcgccttca       900
     tatttattcc accgtcgctc ttgtatttat ttcacgccgc tttcaataac tatttcgccg       960
     ttcgcttaaa taattgtttc accgttgccg atacttcgat ttatttcacg cgctttgtat      1020
     ttatttcacg ccgcttcaat aactatttcg ctgtcgctta ttaattattt caccgtcgct      1080
     tataccaatc tcaccgatac ttgtacgatt attttcacgc cgctttaaag aattatttca      1140
     ccgttgctaa taattatttc accgttgtta wtataccgat cgcaccgata ctttgctatt      1200
     tatctcacgc tacttgtatg ttctttcgaa ttcgcttcgc acacgcttcg catgtacaca      1260
     cgagcattga agcagatcat ttgaagcaag tcatttcaac atcttactta ataaacgttg      1320
     ttttctttac tttattataa acgagcattt gttttatttg acataccccc aaccgaccga      1380
     acctggattc cggcgagcta ctccgcgtcc gccgaagctc acacggtttc a               1431
//
ID   LTR-1_LMi   repbase;    DNA;    INV; 1070 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 20.01, Created)
DT   20-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1070
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 119-119 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1070 BP; 348 A; 167 C; 160 G; 395 T; 0 other;
     tgtagtgtta catgcgcctc cacatacaaa acaatattta tttgcccata tttaaattaa        60
     ttatgcttat atttgtatat tttttcttgt aatttcgtat cattttcaat gtgtcactaa       120
     attcttaaag acgcaatata ttctttgaaa aacttaagtc aaagactaac tctgaacaaa       180
     gagcaattag aataatacat agatttaact attgtttcat ttaaaagaaa ggagtagtga       240
     cgccattttt ctcttctgca ttatgctctc gtctagtaaa cttctcttcc atattacgct       300
     tgtatacgac ctgatgaatt gtgaaaatgt ctgtacgata tatctcgatg agaaagttgt       360
     aattgaaatg atgtactgaa tttatgacat gatctcgact gtatgaattt aatgagattt       420
     cacaaaggta actgaacttt gaatgtgatg tatatgtaga cttgcttcat ttatttcaat       480
     aataattgtt tcgtgagttt accgaaattt gtccgagtac ttatttgtag tgagattgga       540
     accttatttt ttcctttcac atttttcatt taactgtgat gcaatttatt tttcaggaca       600
     aaagaataat gaattacact gatttacgaa tctaattgtt ggagatgtgt acaataggac       660
     ccatttttat cacgttcttt tattaaataa ttattctaac tgcgaccctg agattacgag       720
     cgacttacca ttttcgatta gtaacagatc aactagccgc aaacttagtt acaaaatcag       780
     caatagtgat aatgtctcca acagttaggt tcacgttgct tatcagtatc agccaggtta       840
     gaaaaggatt ttaactactt tcttggtgcg tagctcatta atttctctaa aagtacagca       900
     tagtagattc atttcaatag atagatggtt ttgctacgta accagtattg aaatatttct       960
     cccaaccact ctttacagtt attctatttc gtgctcacat taacttgcaa aaatttatac      1020
     tgacttaaaa atttaaatta aaataagaaa attaagggag gaatgtttca                 1070
//
ID   LTR-1_RPr-LTR repbase;    DNA;    INV; 589 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   LTR portion of retrotransposons: consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-1_RPr-LTR.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-589
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3436-3436 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 589 BP; 168 A; 92 C; 167 G; 162 T; 0 other;
     tgtaaagtgg taaataacaa aaggcgaagt attgtgaggt ttaaaggtga aacagagaat        60
     aaacagaggt tccgcgataa gagcggcagt gggggaaagg ccggtgagtg agggactagg       120
     cagagagtgg gcagccacag cctagtgcag acagacagac agacacaagc cgagaatcaa       180
     actcaaagat aggtgagctt gtatgtcggt gtgttagtcc cttactcaca cggcctggtg       240
     tatagtaact gtagagacta tttaacatta gatattaaga acatggtaca tagcagatat       300
     tcattcgtat agtttaaaga gaaagtcttt tatgttttat ggtttaagtt tgccttttta       360
     tttatttaat aaagttttgt tctgtttacc aattaactgt tcctggctat tatttatcca       420
     tcccttccct agtgtgcgtg agtgtgtatg tgtagagagt gagttgacaa gagcgtgtga       480
     gcgtgtgcgt gtgtaggtgt gcgtgtgtag gtgtgatcga gagcatctca aggagtgcag       540
     ccgcgctgcg aacgagagac agcagaagca gcgactcgct gggtttaca                   589
//
ID   LTR-2_BM-I  repbase;    DNA;    INV; 563 BP.
XX
AC   .
XX
DT   02-AUG-2013 (Rel. 20.10, Created)
DT   02-AUG-2013 (Rel. 20.10, Last updated, Version 3)
XX
DE   LTR retrotransposon from the domestic silkworm; internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-2_BM-I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-563
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3421-3421 (2015).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 563 BP; 146 A; 197 C; 121 G; 98 T; 1 other;
     aactggtgac ctccgacgtg atgtgaacac gcaaccttct gattcatcat cagcgcatca        60
     agaacttcgg ctaccacaat ccccgcattc tcgcagataa aagcamgtca tcgacagtcg       120
     tcccacagca agccagcatc gcagcctcaa caggaccatc gcagccgact caccgcgctt       180
     cctggtccta cggcacgcaa cttcactgcc tcatcacgcc gctacagttc atcgcagccc       240
     acgaccggat catcaacgct tggggtcaca catctccggc gtggcagctc tgcatcacat       300
     ggactacgca cgacacgcac gcaacattca agctcagtct cgactcaccg cagacttcga       360
     gcagcactgg cgacaatcac gcagcattca gctcagtttc gactcactgc aaacttcgag       420
     cagcactggc gacacgcacg cagcattcaa gctcagcctc gactcaccgc aggcttcgag       480
     cagcactggc ccttgcaagc taatctcagc acggacaacg ctaactaaaa aatgacacga       540
     cctccagtct cggaggggag tga                                               563
//
ID   LTR-2_BM-LTR repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   02-AUG-2013 (Rel. 20.10, Created)
DT   02-AUG-2013 (Rel. 20.10, Last updated, Version 3)
XX
DE   LTR retrotransposon from the domestic silkworm; long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-2_BM-LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-179
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3422-3422 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 179 BP; 51 A; 49 C; 36 G; 43 T; 0 other;
     tgtggcgggt agccatcata caacgcaaga taattgacag atgcctgaat ctcgcttacg        60
     acattttcaa gataaagcgc atatatacaa gttccgaaca acaacattcg gaccgtcggt       120
     ctaccgagca atatcacccg ctcggtggaa gatcttccct ttgtcgttaa gcctcccca        179
//
ID   LTR-2_Hm    repbase;    DNA;    INV; 1071 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-2_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1071
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           467..1069
FT                 /product="LTR-2_Hm_1p"
FT                 /translation="DLSIYFILFLSTMSSVADILANQKQLASAIESVYTNF
FT                 KKDGASRRTPEYIKKRLDLLESYWFEYETNFTRLSNKELEIHTRDAIAKDL
FT                 ERMKERYDIIKIHIQSCDITTGEKPQSPLGKPPTFPLKTQESNPQPGSSRA
FT                 ALQHSYTDSKTVDMLRKQQSNFKAFHRTVEGITLDLISERWELEDLLRTIQ
FT                 SRWSVIDTLHW"
XX
SQ   Sequence 1071 BP; 328 A; 216 C; 226 G; 300 T; 1 other;
     tgtacgagca agcgcgtaca tgtagcgctt agcttgcatt ttatatgacc taaattactc        60
     aataccaata ttttaattat aataagtcag ttcatcgctt tcggtcatta agagtaccgc       120
     gcgtggctca atacattttt gcatttaatt cattatactt ttagatgcat taatattata       180
     tatttatcat agaaaactgt tttatttata aacactcgta cggcatcccg tacatattgg       240
     tccttcgagc ctatagaaaa acggaaccct tgtacatccg cgtgtgtgcg gttccgtgta       300
     ccggtgtacc tgtagagaca cagtgcatta actataagtg actttcgtgt actacgtgst       360
     actgttcgat caagaagaat agtgagtagt attcgaccct tgctgtgaca ttaagagttc       420
     cagtgagaat cgcctgaaca ccaattcagg cgcagatttc aagtaagatc tgtccattta       480
     ttttatatta tttctctcaa cgatgtcgtc ggtggctgat attttggcta accaaaagca       540
     gctggcatcg gccatagaaa gcgtatacac aaattttaag aaagacggcg caagtagaag       600
     gactcccgag tacataaaga agaggttgga ccttctagaa agctattggt tcgagtatga       660
     gactaacttt acgagactat cgaataagga gttagagatt cacactcgtg atgctattgc       720
     taaggatctg gagaggatga aagagaggta tgatattatt aagattcata tccagagctg       780
     tgatattaca actggagaga aaccacaatc tcccctcggt aaacctccca ctttcccact       840
     gaaaacacaa gagtctaatc cacaaccggg cagcagtagg gctgctctac aacactcata       900
     tacggatagc aaaaccgtgg acatgctgag aaagcaacaa agtaatttca aggccttcca       960
     tcggacagtg gaaggtataa ctttagattt aataagcgag agatgggagt tagaagatct      1020
     gcttcgcacg attcagtccc gctggtccgt tatcgacacc ctgcattggg a               1071
//
ID   LTR-2_LMi   repbase;    DNA;    INV; 955 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-955
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 107-107 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 955 BP; 360 A; 195 C; 127 G; 273 T; 0 other;
     taaaagctgt gtacgtgttg tttgatgttg aacctatcgt taaatcagac aacaaattgt        60
     tcattaacac agtaatttgg tttaattatg gccctgatat tgatgtatat actgttaaat       120
     aagaaacagt gcattaaact gattatgtgc gcaacggatc ttttaacaaa acaactgtga       180
     caaataacct gcatgaaaca cacactgact atactcaaaa aatttgactg cgagaaagat       240
     attaaaaaca caaaccactt tcttaatgtt tgactgcgag aattttatgc agatcagtac       300
     ctgattatca aaattcagta tcataatcaa ttaactgcag tgttgcataa caatcattta       360
     ctacggcaca aataacgaaa tctgttcaac aagattacca aaatcaatac tgcactttaa       420
     atccacaaat aactaattat caaataaagg aagtaggtta atcttctaac tacgtaaatg       480
     aaacaggaaa gaaaggtcaa ctttgttact tattattaat aatcaccatt acattaccta       540
     cataatacaa ccttttcata atgacatgaa atgcaattac cttcattcca gcggtggtac       600
     aacgttttca tagtaataaa aaatacaata tatattccaa atacaatcaa atcaacttgc       660
     tggcacagca gcctctgctc tacatcggag ccatacacac aactcaaccg ctctctaagc       720
     gagctgaacc acaagtccca ctctctctct ctctctgcgc gagctacaat gctatgcgat       780
     acataatctt tgccaaagat gaaacttcac agacttaagt acacatatcg atacacacag       840
     tagaagcaat attatacatt ttcttgcaag caagttactc gacacaaaac aggaggcaca       900
     atattagaca ttttcttaca aatcagaaat aaacattttc tatggacacg tttca            955
//
ID   LTR-2_PBa-LTR repbase;    DNA;    INV; 1644 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-2_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1644
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 723-723 (2014).
XX
DR   [2] (Consensus)
XX
CC   92% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 1644 BP; 324 A; 638 C; 461 G; 219 T; 2 other;
     tgtggcggtc accgccactc cggcccagca acgagcgcgc cggcgcgcgc cgccgcgctg        60
     ccacgcgccg acaccgtggg cccgcgcacg ggagtgacac acgctcgcca cgagatggcc       120
     agccgtccga ccgtctgctc gtgcgcggaa agccgtaggg cccgcccgcg cacgagagtg       180
     atacacgcgc tcgccacgag atggccaccc ggacaatcat caactcgtgc gcggaagacc       240
     acacggccgc tatataagag cggccagcac cagcaaccga cactacccct cagtgcgctc       300
     tggggcccgt acacggctaa agagacactg aggtccgacc gcttgcggtc aattacacgg       360
     ccttttttgc tggcgttacc gacccttcac aggtcgtact ctcccctcgg tggccgttca       420
     cgccatagag gggctcctca ccctccgacg cggccgttca cgccgtgcct cctctcgccg       480
     aactctcctc agcggccgtt cacgccgttg agcgggactc taggcatccc tgccgagagg       540
     cacccgaacg agccaccacc gcagacatcg gaggaaggcc acgccgcgga gacgacgccg       600
     gagtacgccg ccaaggatca gactccgcca ccacgtcgca gccacctcta cacagccgcc       660
     gacctcgcag ccgcatccgc ccgtgcccta gcggcctgct ggccgccatc accgcgggga       720
     ggcctacccc cgccgccagg accagcgcag agcggacttc acggctggga ggacgacgag       780
     acggccaggc accgacaccg gcgacaccgc gccgaccaga gcccgcgccg ccagcgcgga       840
     ggagcgaaca tcgccccacg gcctcggagc gagaccgwtt agtcgagctg tttggcgccc       900
     tctcgacttc ctcctcgtcg gccgacagcc acacgtccgg cccaacatcg cggacgccac       960
     cgcggccgag cgcagcagct ccgcggactt gtccgcctac gccgggccgc agcatccact      1020
     ttccggcccg cagggacgca cgcggcgaac caaccacccc gcaacgggcg aggttctcgc      1080
     cgcagatcgc ggcacatcgc tgcccatccg tcccaggctt caccggacta cgaccggagc      1140
     ccaccagcac tccgtggcgc ctcatacccc ttgacctggg gagcatcacg cggggaacgc      1200
     cccgccgaga ccaccggcag tcttcgttcc acgccgcctc tcagaccgag gcctcgccat      1260
     ccatcgaagc cgctctgacg acccgagcca ggacgcctca ccacggcgga gccggtgccc      1320
     gcgagagacg cgcacaacgg tacagagagg aaccacgcgc cccggtcacc accggaggca      1380
     cctcgtatac gcgggggact cagactccca cgccgcgcca ttaatgtaca cgacgtcttt      1440
     ctctattaaa aatgtataaa atgtactcat gagaatcgcc tatttctggg aaccagcacg      1500
     aacaaccttc ctttccccgt cgcccattcc gctttgtact cgagaagcag acagcggact      1560
     ggctgcgccg gagactcagc agatkcacaa cgttttcagt ggtggacata cgaaccacca      1620
     cattggtgta ccacaaacac cata                                             1644
//
ID   LTR-2_PPo-I repbase;    DNA;    INV; 1396 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-2_PPo-LTR; LTR-2_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1396
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2989-2989 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 1396 BP; 411 A; 192 C; 333 G; 455 T; 5 other;
     tggtccatac gagccggata agtgaaatac caagagcaac taaaccgaga gccggcagcc        60
     ggcagccaaa aagttcacaa ggtgcaaaaa ctaacgccat aggagttggg cgttaggagc       120
     acatatattt aagaagaaga ctgctacaac ggccagcgca gtagcctcga gcagggcgtg       180
     agcgcgatgg cgccacaaag ggcagcgcgt cgtgtcgtgc gcgctctgat gacgtcatcc       240
     gcgtgtacgc gccattttgt gaaaatttaa aaagtgaatt ggtttatttt aaaagaatgt       300
     gggtttattt tgagtgatat tttattttct gaatttttgt gtgttgacaa taggtatgat       360
     tttggttatg ttggttagat ttgatatttg tgttttaggt tagtgtttta atttgatgtt       420
     gagaatattt tatgatgtaa tattatttga tttgtgttta ggattaatgt ctatgttcgt       480
     gtgttatatt ttgttgtatt gttgcaaatg tataaggtta ggatttttac tttttattgt       540
     tctgttttat ggcagtgtca gcaatgttaa gggattaagc gggccataag tacatacatg       600
     atggataaga tgtaaagcaa tagtaaagat atcaggtgta agtttaagaa gtacaagata       660
     ataagattta gtttattcaa gtsaaatgat ttgatcctag gtactgtttt ccagtgtgac       720
     catgtattca atgttataac gagctccctg caaaccgaac caagcaaacg gaaaggtaga       780
     gctaaagttt aggatacatc ggtcttaaca acgtacagca ctgagaggga tcccttacag       840
     ttcaatacat cattgcgagc actctccgaa atattgggcc tatgtggcat tgtgtatgat       900
     gtaagttcgg agtgtcattt aagtggatgt ttgaacattk tgtaaaaagg gasgacctag       960
     gtattatcag tatcctagag attgtaatga caagatgtaa gaatgagaaa agtcgcaaag      1020
     ttattggcga gcggatgaga gaggcaggta acaagtagat ttagattttt agcaacagca      1080
     agtcgcacca catttaacaa catatatatc ttagcaattt aggtcaaatg ttgtgagtgg      1140
     ctattagcaa ataagcaaag atttawgtac tgatgttttt gtgtttgagt tgtcttttga      1200
     tatttaaagt ttattgatag ttacctakaa aagagatgtt ttttcaagtt agattataca      1260
     gtccactgtt caagaagtta tgaggctatg ttgttgtttt tgtatttgtc accatcgttt      1320
     tcaagttctc ccccacatcg catggtgggc gggacagttt tgtgaagaac attaacaatg      1380
     ttcttggtgg gcggta                                                      1396
//
ID   LTR-2_PPo-LTR repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-2_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-258
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2990-2990 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5bp TSD.
XX
SQ   Sequence 258 BP; 87 A; 30 C; 52 G; 89 T; 0 other;
     tgttgagtgc aaaatacaac ctctttggct gacaagcagt atgtatacag ccaaagaggt        60
     tgcatactgg ccaccaaggc aataatcgtt tgtaaaagaa aatatataaa agaagaagtc       120
     aagatgtgat cgacatagtt tagagtttta agtttttgta tatttttttg tgtaaataag       180
     ttttaaataa agatatgttt gttttataat aagtgttttg tatttttggc tgccgcgctg       240
     tcggtaacaa gttaaaca                                                     258
//
ID   LTR-3_gypsy_Hm repbase;    DNA;    INV; 524 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Gypsy; LTR-3_gypsy_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-524
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 524 BP; 174 A; 120 C; 71 G; 159 T; 0 other;
     tgtaggagat tgctcgcaaa tgactcttat tggacctgtg ggctccattg tgggttaatg        60
     caagcaggaa taacgcagca gattcgtgac actcgtcact agtccttcct ttctccaaaa       120
     catcagaaga ctacatcatt ccacaatcgt caaaacatca gaagactaaa ccattccacg       180
     atcgtcaact tcctccttat tttaaaatcg aacttcaccc tcacacgtca cgactctact       240
     caaggcataa gcctccgcgt tattggtcaa attacctcac tggtcaaata aaagtcatat       300
     tggagtctat caaatatatg tcagccaatc gtaattctac aataatcaat aattagtgtc       360
     ttttcgatca tttcctctga agctatacaa atgtgttgac acattgtctt tttaaaaaaa       420
     aacagccagt catattataa acagttgcta cagataataa tattaaagct aatcattaaa       480
     catctaagat aatataatat ctgttctaat ctcttccttc taca                        524
//
ID   LTR-3_LMi   repbase;    DNA;    INV; 1254 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   11-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1254
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 108-108 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 1254 BP; 408 A; 181 C; 208 G; 457 T; 0 other;
     tctaacgtcc gtcacccctt ttcggaatga ctcaaactga gccctaatat tttcctgaat        60
     cacggaaagt tttattagtt cacagtctat aacaaagtca ttccactgta ggtgaagttg       120
     aacttatctt atatgctggc tgaagtccat tgcgttgtga gctgtcttcg gcattcacta       180
     aaagatttga ttttacagga tcttttcgta aattaaaaac atgtcagttg atatggaaac       240
     gattttattt ccacttaaac aacgtttaaa tcaatcacat tgttgcacaa tcaaaaaatg       300
     cagcggcaag ccaacagagc tgcttacagg tttctggccg ctagaagact cttagaagac       360
     taacaaaaca tggtttctct caaacatctt tctacgtaac cgcgtaataa gattgatgac       420
     aaagttttgt aattcacaat taaacaatat tcttttacat taaatatgcc aaaatacaga       480
     aattaaaaca ttacatttaa gctttgacta tttatgtcaa tgtatgtact tgtttcatga       540
     aatttgtatt taatgtggta cacaaattta aagtcatcct tttgactagt gtttacagtg       600
     ctcaaattat ttacattatg tgtgttttcg aagtgcacac atatttgttt tgccaatatt       660
     gtgtaggcgt aatattattg tgacatggaa ttttaatgtg tttcagtttg cggtcaaatt       720
     atttattaat acggatttgt atatggttgt cgtagttttg ttaatttcga agatagtttc       780
     ttagtaccaa acggattatt aattttagtg catgaaaaat tatcagtatt taatttagga       840
     tctagtgata tataaaacat ggtctgccct aatttattta aacaaaaggt atatatgaaa       900
     tcatgttgtg caatagttat aacatgtagc attgttgttt ttatacaaat tagtatctat       960
     ataggttcag caatttccga aactaagtgt aatgcatttt tagtgtttgc agctattatt      1020
     tacgaaagta ttaaaaactg aaaattacgt aaaaggtcag ccaaagttat atttaaatca      1080
     acgtactatt tcttaaaagc gttttactaa tagtgttaat agaatttcaa acgaaggcga      1140
     aaatgtgata ttttacatgt ccggtaatga agttttattt taggtgtcag atatttcgtg      1200
     tttctatgtt ggcaactgat ttttaggagt gtgcaacata gcagaaacgt taca            1254
//
ID   LTR-3_PBa-LTR repbase;    DNA;    INV; 1750 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-3_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1750
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 724-724 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to the consensus. TSDs are 4-bp long.
XX
SQ   Sequence 1750 BP; 318 A; 670 C; 469 G; 288 T; 5 other;
     tgtggcggtc actgcctcgc gaacgcacca tcgacacacc gtcgcgcgca gtcccgcgca        60
     gsatggtggt tcgcgcgccc gccactagat ggcgaatcga caaatcactt tctcgtgtct       120
     gaaacgctac agcggacgct atataagagc ggcactcggc atcgctcttc gcctcagtcg       180
     cctcgaacca agttactggt aagagctgca ctgcgacgcc ctccgagctc tggaggccag       240
     ccctggcctc attgctcagt acacggcagt ttttcctgct ggaaatcacc gaccaacatt       300
     cggtcgtact ccccgcggca gttaacgccg cggataccct tccgggctta cgtctgacgg       360
     ccgtgaacgc cgccaaaccg gccttacctc tgacggccgt gaacgccgcc acatccttcc       420
     ggcctacgtc tgacggccgt gaacgccgcc atcttccggc cttgcctctg acggccgtga       480
     acgccgccat atccatctcg cctctctcct acggacgtgt tcctgtcggc cgtgaacgcc       540
     gcagccacac cacgtccagg aaggtctctc gcggccagcg acgccgccca atccgcccgt       600
     gtccgggcga cctgctccag gccgcagtct cagcacgccg atctccatcg actcggggag       660
     ccgctgcgca acaggaggac ctccgccggc gtgcctcctc tccaggggcc gcccacgacg       720
     actcgtcatc tccgggacga tcgacgctgc ccaccatcca ggagtcgccg gcaccacaac       780
     gctcgccgcc gccgactgcg cggccatcca cgccgctgcc tgggcacaca cctccctcgc       840
     cgtgcaccga ccaggaggga cgagtcaccg gacgacgagc caggcgccca accggtcgct       900
     caggcaacgg ctcctggacc tgttcggctc ggcttcctcc tccgaggaca gcctgccccg       960
     gccgccgact ccgcccgcag gggacgcgtc gagtccctcg acctcctcga gcgcaccgca      1020
     cccgagcgac caccgactcc tggccgctct ttggagctcg gcgcgcaacm ggacaggccg      1080
     tggcagctct gcgccatcga gctcggccac gtgcagcatc ggccgccgcg ccgtgacact      1140
     cgccggttct tcaccgaagc cgccacgcag accgcgggac tgccaccggc mcaggtcgag      1200
     ccccaacgct caccccccgg ccgcgccgag gaggagccgg ggctcgtgag aggcgcaggg      1260
     agcggctgca ggagcttgcg cgcgcacgcg cagagacaga cgcgaccgac tcgcccacgc      1320
     gcttttcccg cgggacccag actaagtccc gmcagcctwt gtagcatttt ttttgtttgc      1380
     gtttcgaata taatggcttt tatattaact cggcgttcct tgattgttag cgtgcatgca      1440
     accttcacat atccttcagc ttgcgctcct attatccaac gcatagcgac acttggctgc      1500
     taaaccttcc gctttgcttg gtgccgacac tcgcaccgtt ggtccgccac acagctggtc      1560
     gaggacagac acctcccctc ggactgagaa ccagctttca ccagccgatt gcgggcgacg      1620
     cagtgcagca ggccacacac acgctcgaga cgcgccacac gcacacgcaa tcgccatcca      1680
     cgccaccaag cgtcacacca caccacaaat tcgcgacaat aactggcgac acacacatca      1740
     agccaccata                                                             1750
//
ID   LTR-3_PPo-I repbase;    DNA;    INV; 1209 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-3_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1209
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2991-2991 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1209 BP; 462 A; 85 C; 261 G; 392 T; 9 other;
     ggttatgggc ccagatattg aaaaattcat gaatttttac gaagaatttg aaataagaaa        60
     ataaccatag cmaccagatt gttgattawa aatawgcatg gcaaccaaga tggattcagt       120
     aaaatttaat ttgaagaatg aagaaagtat ggaaaataga gagaacttcg cgaaagagat       180
     attgtaagga aaagttgtag cggagtttat gaagttcgag aaggtgatgg tatagggaga       240
     gattattgag agggagagag tacagaaatg aaagtcgaga agaaatagga aggattgtaa       300
     gttatgaaga aataggtact ggaaaagaaa aaaaaataga atgaaacaaa tgacagaaat       360
     gccaatgaaa ctgtaataac tgaatttaat ttgtagtcaa ggaggtatac ggatgtttaa       420
     tgaaacgtag aagtttawag tgagtcaaga aggtgtaggt ttttcaataa acttgaagtt       480
     tatgaaataa aggatagaga ggttaattta gtggctgatg gatagtaata gtaatagttt       540
     tgagtatgat aggaatttgc ttcaccagca cacaaaatga taaaataaat aaaggttatt       600
     atttattctc atttaaawta akattaatac aattgtktat aaaaataaga tatkattttt       660
     atactataca aaacatgttc ttttctctat tttcgaacaa ctaacttaaa attaaacata       720
     tgtcattatt taaattatcc tagacagcca gtcttacact gcaacctcta cataaagtag       780
     gtttcattta caacagagta ggtagtgatt gaggagattt tattatatag gaagttgaga       840
     aagagttaaa ggtatgttta ttgaagtttt atgtagtgag ttgattgagt aaaataattt       900
     gtttagtcga gtaggagtgt gcaagtaagg aggaatttga gatggcaata tttataagag       960
     attgatataa ataatgtttg attgatggga gttaataatt ttggataaaa tgagatagaa      1020
     ttttttgttt attaaattta ttatgttctg ttgtactgat ttcatgagtt tataaaatgk      1080
     taatgtataa ataggtattt atggtggtat gggtaaattt acaaagtcat gttagtgaat      1140
     attttatttt tggtgtattg tattaaatat tatacagggg gtaaaactgt gcaaagtgtt      1200
     gagggggtg                                                              1209
//
ID   LTR-3_PPo-LTR repbase;    DNA;    INV; 286 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-3_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-286
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2992-2992 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5bp TSD.
XX
SQ   Sequence 286 BP; 92 A; 47 C; 58 G; 89 T; 0 other;
     tgttggagtt tttatatgtt atgttactgg ctggcaacac cttgcacagg aaggatgatt        60
     tgaatattgg aacagtgtat ttaaatttta taaagaattt gatgtttgta aacagagact       120
     tctcatcacg acacgtaccg ggcaacatat gtaaacataa gactttatta aatgtaatat       180
     gtgactgttt ttatactgcg aatataccag ttgaatatgt gaatacgagt gtttcaatag       240
     acctccacct ccagagtccg ggacggtgaa aagcaaccgt ccaaca                      286
//
ID   LTR-4_ACe-LTR repbase;    DNA;    INV; 499 BP.
XX
AC   .
XX
DT   06-JUN-2012 (Rel. 19.03, Created)
DT   06-JUN-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR-retrotransposons from Atta cephalotes, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-4_ACe-LTR.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), - (2011).
XX
RN   [2]
RP   1-499
RA   Bao W. and Jurka J.;
RT   "LTR-retrotransposons from Atta cephalotes genome.";
RL   Repbase Reports 14(3), 743-743 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to the consensus.
XX
SQ   Sequence 499 BP; 124 A; 114 C; 68 G; 193 T; 0 other;
     tgttacgtgc cacgtcactt ttgttaacgt cacgttttta acataaagtt tttctacaca        60
     ttttttccta aacattcctg ataaatcttg tttcctgcta cttttcttat ttgctttcac       120
     ctatcgtttt tagtcctttt ttttatctac ccttaagacc cgtctcgaat attcagtctt       180
     acagatatct tatgactcat ccctaaacgg attcgtgagt catcgacagt cacatatctc       240
     agtttctttc atccccatca cgtatatttt tggtattcga aaatgtcacg ttattggtta       300
     aaatttatcg gaatctccac ctcttttatc gtagtgaaga tccctctagt tctgatcgag       360
     tcagtctgtt ctcgtaagct gcgaataaac acatctccga cttagtctat aagcttgcct       420
     gtatcatcat tgaataaagt tcggtcagaa gacagttgtc gaaccttttt aatactttac       480
     atattactcg ctcgtaaca                                                    499
//
ID   LTR-4_Hm    repbase;    DNA;    INV; 2073 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   16-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   LTR retrotransposon from Heliconius melpomene.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; LTR-4_Hm.
XX
NM   LTR-4_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2073
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           544..2070
FT                 /product="LTR-4_Hm_1p"
FT                 /translation="EXXSASRKTLAYLEDRLSRLNSNWEKFVYNHQLLEKS
FT                 XTTDIQYFNDDXFNKTKRMYEDILQDILKRKSELPSASTSKVQNTPSASPE
FT                 KSKESKSKFYFEDIKFHASPRETNESTEKQQDLLRQQXCNFRAFERTVGKI
FT                 NCDAMREKWELEDNLNILKIKWDQIEKTNWELDYISRDEDSTYREKYENIE
FT                 NIYDNLRKKLQNNIWNNSHYERATPKXIIPDFYGNYNQWLTFKDLYVESVH
FT                 NNPMLSNAQKMQHLKTKXKGEAEXLVQHLGISAENYTSCWEILTHRYDNKR
FT                 LLFTSYINTLLNQNSIQEASAASIRKLHDVMLECLNGLSNIGLDITNWDPI
FT                 IVHLLMQKLDKSTYNEYIKDLKKPRDFPNLEEFTNFLESKFMALEALQGNH
FT                 QKSSSNKYSPPNKYFNNISTNRNNNYKYHTPRSSYFNKFQKTANTHFATTK
FT                 ICPLCKRNHVLMNCDKFLAMNGNARKNTVSNLRVCSNCLYSHGEQRCFSQK
FT                 RCKKCDMSHHTLM"
XX
SQ   Sequence 2073 BP; 779 A; 381 C; 357 G; 543 T; 13 other;
     tgtacggttc acgtacagat ttttatatag ctgacgacgc gacctvgttt tggacgcatt        60
     agaacaaaat atatttaaat taatagtcgt ataattaaca tcgcagttga cgggcggctc       120
     tcaccgcgga ttggcatcca acttaaactt tgtaacttaa gtaataaacg atttactcgc       180
     taatcctgtg gtttatatct caactcaact ctactacgag ccatacataa atttggtcct       240
     tcgagctaca agatctcgga atttggtcct tcaagcttca aaatcgcgaa attaatcctt       300
     cgagcttata aaatttggtg aaaaggagac cttcgtgaaa tcaagatctg cggaaaaatt       360
     tcgggattaa actgaactaa cgacactgtg acgaaacagt tctacggtat caacaacaaa       420
     cttaacttaa tactttataa cttatctaca actgcaaaca acaatggctc agaacgtcca       480
     ggacatcatt agccgccaag aaattatttt tggagaactg aagcaaataa acaacaacta       540
     taagaaagmm htagtgcaag caggaagact ttggcttact tagaagatcg tctttctcgt       600
     ctgaactcaa actgggagaa atttgtatac aatcatcagc tactggaaaa aagtgadaca       660
     acggatattc aatacttcaa cgatgatntt ttcaacaaaa cgaagaggat gtacgaagat       720
     attttgcaag acatactgaa gagaaagtcg gagctaccat cggcatctac aagtaaggtt       780
     caaaatactc cttcggcgtc acctgaaaag agcaaagaga gcaagtcgaa attttatttc       840
     gaagatatta aatttcacgc atctccgcgg gaaaccaacg agtcaactga aaaacaacaa       900
     gatcttttac ggcaacaatt htgtaacttt cgagctttcg agcggactgt ggggaaaatt       960
     aactgtgatg caatgaggga aaaatgggaa ctggaagata acttaaacat tttgaaaata      1020
     aaatgggatc aaatcgaaaa aactaactgg gaactcgact atatatcaag ggatgaagat      1080
     tcaacdtaca gagaaaaata tgaaaatata gaaaatatat acgataatct acgtaagaag      1140
     ctgcaaaata atatctggaa caactcacac tacgaaaggg ctacvccgaa anttattata      1200
     ccggattttt atggtaacta taaccagtgg ttaacattta aagatcttta cgtcgaaagc      1260
     gtgcataaca atcccatgtt gtctaatgct caaaaaatgc aacatcttaa aactaaabth      1320
     aagggcgaag cggagwaact agttcaacat ctcgggatca gtgctgaaaa ctacacatct      1380
     tgctgggaga ttcttactca tcgctatgac aacaaaaggc ttttatttac atcttacata      1440
     aatacattat taaaccaaaa ttcaatacaa gaagcaagcg cggccagcat aagaaaatta      1500
     catgacgtca tgctagaatg tttaaacggg cttagtaata ttggtttgga tataaccaat      1560
     tgggatccaa ttattgttca tttattaatg caaaagctgg ataaatcaac ctacaacgaa      1620
     tacatcaaag acctcaagaa accgagagat tttccaaatt tagaagaatt tacaaacttt      1680
     ttagaatcga aatttatggc tttggaagca ttacaaggaa atcatcaaaa atcatcgtca      1740
     aataaatatt caccgcctaa taaatacttc aataatatat caacaaatcg caataataat      1800
     tataaatatc atacaccgag gtcatcgtac tttaataagt ttcaaaagac ggcaaataca      1860
     cacttcgcca caacaaaaat ctgcccgctt tgcaaaagaa accacgtatt gatgaactgt      1920
     gacaaattcc ttgcaatgaa tggaaatgca cgcaaaaaca cagtaagcaa tttacgtgtt      1980
     tgttcgaatt gtttgtacag tcatggagaa cagcgatgtt tttcgcaaaa aaggtgcaaa      2040
     aaatgtgata tgtcacatca cactctcatg cat                                   2073
//
ID   LTR-4_LMi   repbase;    DNA;    INV; 1449 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   11-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1449
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 109-109 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 1449 BP; 426 A; 343 C; 242 G; 438 T; 0 other;
     tgtgaaggtc ggggtgagag tttaaaatgg gaaagttaat ttttaaaact cacaaccacc        60
     agctgcgaac caaattccta aacatgcaaa aacactggaa ctgtgattgc gactgtttga       120
     ctcgttttct aggggatgat atcacacgtt cgcagctttc cttccctgca tatgattaac       180
     aaaacaaatt cataataaaa tcaagttcat gagagaaaag ggtgtactaa ctactatttt       240
     tgaaaacacg tgaaagttca ctttatgttg tttatttcac aatattagaa ccctgtggct       300
     gatacgtctg tacgtcgcac atttatcaaa taaagttata gctcgtgagc ccccagacaa       360
     aatgaatatt tgtcgcgaat tgttttcaca ccacgtggct gtctcaaaca ccgtttatgt       420
     tcatgcctat gcgacgacac gtgttacatt aacaaatcac agtcacttta attcaatgcg       480
     atgcacacct tgttccaccg gctaaatatt cacaacacac agtagcactc gattcaactt       540
     ggtgcagtct acgacgagca accacacgtg gcgattgcca cacacaaatc taagtcccac       600
     ctgagatcca catgccgact gatgcagagc gacgccgccc ggccagctcc cactgctccg       660
     tctcacttcc tgcccgcgcg cgcgcgccaa aagctcaact gccgggtttt ttcccctacg       720
     tcatcaactt ccccatgtga gctgttctaa ccgatttgcc aacgtacagc gctcagccaa       780
     tacatttcta aaactttact taaaatcaaa ataattacac tacacattaa acaaatattt       840
     tcttacgttt ttatattagt ataaacatcc tttgtactat atattatttt tataaacaaa       900
     cattgccatg ctagttgtgt aactgtcttg tcttcgttgg taatttatta cttttcattg       960
     tcaattaaac atattacgtt agatgtgact atatcagcta atgtattgtt tatttatcaa      1020
     caggctattt tgtaatgagg gccttaaagg ttcctaactg catcgtatta cttcaaatgc      1080
     cagtagtatt acaatatttt atttcagcgt gcactgcact gtgcctggca ctcgccattg      1140
     tccctctctc ccctcaccgg aaacgaactg taaaatccta agttggaaca agccaccaac      1200
     gtcggcctgc tcgctggcct cccgtcagct acaagcacac agcaaatctc aacgtggaga      1260
     atttctacct atggcctaac tataaatgtt gtcacccaac tgtgtacata cattgctacc      1320
     ataattaata agattaaaat tgtgtaacat ttagtgcatt ggcatggtca atgtttgcag      1380
     tgaacttcat actgtttaat tatcaaatgc tattaattac cagtatttct attgggcggt      1440
     aatctcaca                                                              1449
//
ID   LTR-4_PBa-LTR repbase;    DNA;    INV; 1690 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   LTR retrotransposon from the Pogonomyrmex barbatus genome: long
DE   terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-4_PBa-LTR.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1690
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 725-725 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to the consensus.
XX
SQ   Sequence 1690 BP; 381 A; 412 C; 477 G; 420 T; 0 other;
     tgtgacgtgg cgccttgaga tcgcccgtca caaggtgcgg ctgctccgat tcggagcatt        60
     actgggtcct gcgtccaccc gtttgagggg cgagagcgca ggcgaactcc gagtagcgcg       120
     aaccacatat gtaattgcgc gaatttcctt gtctttttta ttttgttact atcgttttcg       180
     agtctgattt tcgcgatact agattgaatt ggcgagattg acgactgccg cgagattcgt       240
     gtaccaccga cgaccaacga cgaccgggta cgaagaggat gccgccaccg gatgcaagga       300
     ataatcaggt cgtaccaccc taattagttg ccgattttct ctctctgtat gcaagttccc       360
     gtattgtagt gcgacattta caggagtcga gaggctgacc catacaacgc ggggatcgaa       420
     gggcgatcga gaggggaggc gccactcctc gcgagattgc gaggagaccc cgcatcgagg       480
     aaggcgagcc gaagagtacg aggacgagta atcgagccgg gagagacagc cacctctcac       540
     cggaaggatc gatgtaccag gagaggatcc tcgggagtcg caagctcggt cgagtaaagg       600
     atcgccgcct tcgaatctcc cgcggggtcg gcgaagcgcg ggccatctag gatccgcgcc       660
     gaaatccaga aagatttatc ggctgatcgc gccgcggcgc tgatcgatac gaagagaggg       720
     gatgacgacc accacggtgt cgcgaggatt cgcgaggaca ctttccgttc ggtggtgatt       780
     gtaagtggac gcaggagcca gctgccggag ccacgaggag agatcgaagc agaggatcga       840
     ggagagggtt gccgtctggt gaggcgaacg ttatcattgt aaagtcgtca atttcgcccg       900
     cggatccgag gaatcgcgcg gggctggctc gcaaaaattt tcgcggggga aagcgttccc       960
     cgcgaccgcg agaatattgc gtcatcgccg ttgttcaccc ggcgagccgg ccacgtgcct      1020
     tcctcgcgat ataattatcg agtcgttgcg gcgtttttct ctcgccctcg tcactcgcgg      1080
     aaagtccaaa taattgtagt attcgtacga ttctcatgta tggttgccgc gcgtagaatt      1140
     tactgttgta gagtgagata aactgtgtcg ttcgcgtggc tgtattaaat tacgtgttgc      1200
     gaattaaatc tgtgttttat gtgagctcga accatcaggc gaaagcgtgt tcggaatatc      1260
     gttgccgcgt gtatttccga gtgatatatc gcatcgctgt cttactcgtt taacgtaaag      1320
     atttctttgt gtaacttttg tcgttgcgag attcgagact cttcgaaatg ttacatcatg      1380
     aaagagcgag ataagtaaat gtaatgattc gggccgaaat taaagcattc ttatgttact      1440
     ctaattaatt cttgttgcat cattttgatt ccttctctct cgcgccccgt cccgcgaacc      1500
     tcccccctct accccatcaa atcgagctgc cggatcgtcg tatagcgtcc gcgaatctgg      1560
     attttattgt ataagaacaa tcttgcgatt ttctttcttg tatgattgag tggcacgcgc      1620
     tcgtgcctgg cgcccaacaa ttagtaaatt acgttatgag agaccgtcct caggggcggc      1680
     ggtcacaata                                                             1690
//
ID   LTR-4_PPo-LTR repbase;    DNA;    INV; 721 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-4_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-721
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2993-2993 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4bp TSD.
XX
SQ   Sequence 721 BP; 228 A; 99 C; 123 G; 271 T; 0 other;
     tgatagatag gacaaaatag tgttatttat tagaaccttt gatgttaaaa tgtggtactt        60
     aataccaact gagataaaat gataattatt ttctatttat gtatttcgtg tgaaatagtt       120
     tagttatact taatttaacc ttcgtagtgg tgatgtttag tactggcagc taaaatgtaa       180
     aagaggtata aaaagaccct tccggtcaga acactctctc ttccgtggag tcagtgtagc       240
     gagtggactt tcgaggagcg gaccatgggc ctgaccatgg agagttaagt aacctatttt       300
     atattcactg taatacctct taataaataa ctgtaataac cttaccattt gtacaaagct       360
     attttgtata taaaagtata tatgggttgt tggacaagta atgtcaatca tgacaattat       420
     gtgaattgca ttttataatt tgtattggtt aatactattt atgagatctc tataatattg       480
     tgttgtttta ctaattgaat taatgaatat atgctttgta aagttgcttg ttgtttctat       540
     tcatatccag gtttgcctca caaggaaatg gttagctgtc actttcattt attaacagac       600
     gtccatattt aatatattcc catacaactt caaatgattc ttgaaactaa attagatgtt       660
     tgactctcta aattactgta gttgtagcat ttacttattg aatctgagta cgattctaac       720
     a                                                                       721
//
ID   LTR-5_Hm    repbase;    DNA;    INV; 2917 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene.
XX
KW   LTR Retrotransposon; Transposable Element; LTR-5_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2917
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           686..967
FT                 /product="LTR-5_Hm_1p"
FT                 /translation="RPLLIFDWKIFSVDIFSVTLGVHRKDVCPHKILLXIK
FT                 IYXVMSKSFFCLFVYACACKTKLTAXLLFYNDQNKINISYISCKIKCRLMF
FT                 QIILNI"
XX
SQ   Sequence 2917 BP; 928 A; 480 C; 490 G; 999 T; 20 other;
     atgggtcata chcatatgag tgttatdtta haatagcwat aabaaataaa agaaaataga        60
     acgatttttc attctaaatt tdactatgcc taccccctta tgataagtgg atagtctaca       120
     catmraawtt waaaaaaaat gtaaagaaad aaattcaaat tccatcattt gtchccttct       180
     gtgggctgtt cagattcgta gttcatagtt tcaaaaattt gtaatttaag ttattacgcc       240
     cgtgtcatcg aaatcacaca tattttcagc gtagaatata cttgagttga ttttttaatg       300
     ataatttcca aaatgtgctt cagccttttt actataattt ctaataaact agctgttaca       360
     cgtatctgac tcttttctgt gatccaaaaa atctgcattt aaaaaatttc tactaaagtt       420
     accttaaatg taatatcttt taatttggta atattagaca gctataattt gcttacaccc       480
     attacgcaag acggatgtgt atttttatat tccaataaaa agaatcgtgt attttattca       540
     ttttgtaaaa gatcaatgca tctttcctat ttttagtgta ttttggtaag tatgtgctac       600
     ttatatttgt aattatatag gcacaatggc tttaaaggag tatttttgaa atctcacttg       660
     ccatttctct atccttgaaa actaaagacc attgctgatt ttcgattgga aaatcttttc       720
     tgtwgacata ttttctgtta ctctaggtgt gcacaggaaa gatgtatgtc cacataaaat       780
     actattaawa ataaaaatat atrttgtaat gtcaaaatca tttttttgtt tatttgttta       840
     tgcttgcgct tgtaaaacta aactaacagc ttytttgcta ttttataatg accaaaataa       900
     aatcaatata tcgtatatat cttgtaaaat taaatgtaga ctaatgtttc agattatact       960
     aaacatatag cattttacaa gtgtcaagtg gtttaagtta ttaccttaaa taacgaaatc      1020
     ttagcttagc tagctttttt acattgttca agccacattg ccctattcaa atagatctgg      1080
     ggtgcactaa agcaatgaag agaagaaaaa acgaagacgt gagacaagta gagctaaaca      1140
     agatgctatt attaactaat aatgtgccat tatatctata aaacaaaaca ttgatcgaca      1200
     ttgatcatca tcaccagcag atgatttaca tattagcwtc accggctgcg aggcgggagc      1260
     taataactgc gacacagtta atacttctgc agttattacc gattaaagtt gctattgtta      1320
     tgtatgaaat attaatttaa taaatattat tattattatt atgtttctct tttaagattc      1380
     acgggttcaa aagaacccgg tcctttggaa ggcttgcgtg gggacacagg tccaacacgt      1440
     agaggtcctt aagagaatat acaaatgttt tactgtgacg catcagccgg gatccatcgc      1500
     tgggcaacca caggtaattg cccagagatg gtcgccggtt aatgcgtagg aactatggaa      1560
     aatatggaaa tctaaactag gactatggaa tggaatttga atggactggc tattggatga      1620
     gactactgga cgtccgcctt tacaatagtc tcaaattgaa tggttggtgg acggtgactc      1680
     gcctcccact agatgggccc ccacaaagcg gcgtaatgct tcgggcgcaa catcggggtg      1740
     gtcggctaag ggtgtagaga gaagcagcag cagagctcac catcacgagg agctcgtgag      1800
     cgggattccc cgttattacg cattacgttt gagcacttcc accctttcga gcatatagct      1860
     cttgcgctcc actctgccgg ccaataaagg aaagccagag gcgggggata gattacaatt      1920
     cctctccgga ggactcaggt ccgtggggtc gccactcccc aacagctcgc cacaagctgc      1980
     cctgcggctt tattattatt attattctct gaaaattact gttgtaaata tggatcaaaa      2040
     gttcaaccaa tccrttttgg tggattaaaa atahatcttt atttacacac ttgggtcttt      2100
     ctttactact cgttgattat cagtcgctac aacttaagac aacatctatc tgttctattt      2160
     ctacaaattt gagacatgat cccttactta aagatctgat taagahacaa agagtttttt      2220
     gaaaatgacg aagaaaactt aattttatca atttttttcg atataattgt tggccattca      2280
     ttattgaata gatattgttt agtttgatta ggactctttc ttattgtttt aagaggctag      2340
     tatttgttac agtatcatta tcgttacgtt aacattgttt ataaatttat tcattgttta      2400
     aacaaagatt ttgagtttag ttccgttgag ttatgcagaa aataactgaa actattatga      2460
     acaaacaaat aatgataaga aaacatggat taatatactt gctactcagt aattgtaaga      2520
     aattatattt ttcttctatt tattacctta catttttaag actgaaggaa tctgctgtat      2580
     gaatctgaca tttactagat ttttttaatt ttttcgtgac aatattgatg tcatatcgta      2640
     atcaaggacg ttattaacca atacgattat tattagaagt aggaaaccaa tcaaatacat      2700
     gtagcactaa tactttatac ttttctgtag aactgtgtcc gttctgtggt catcaaaaaa      2760
     attatgcatc gaatatcttt ctcgaaaacg aataatgatc tggtctcata tttttcctgt      2820
     attaggttaa tctataagaa ttaaatgaga gtgattttga acaaatattt cacttttttt      2880
     ttcgtacaca tttaggtcgc gatttgtgta tgaccca                               2917
//
ID   LTR-5_LMi   repbase;    DNA;    INV; 2336 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 20.01, Created)
DT   16-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2336
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 110-110 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 2336 BP; 549 A; 451 C; 492 G; 844 T; 0 other;
     tgaaacacgt ccacataacg tgttccattt aattgactcc ccatgaacaa atgttgacga        60
     gcttcagaca tttttttgag tgtagcaaga cactccactc gcaatatgcg agataccagg       120
     cattatatat tgatttagtt ttatctgtat gtaaaattct aagtctatgt tgtacatgag       180
     gccccaaata tgtattagtg tgtactgtga tgtgctccca ctggccctgg cttccacaga       240
     atgaatgaaa ctttgtatgt aagaaagttt agcaagtgct aggcgcgcct cgtctgtttt       300
     gtgtcgtcgt ttctttcaaa cgctgggcgt tgaatgtctc tgggcgagaa gtaggtttgc       360
     caactgctga gcagaaccca gtcttagcaa agattcctaa tgtagcttgc tcttaacctc       420
     cttggctggg ggttggtcag gttacctgcc tgacgaacgg tgacgctctc tgggctcccc       480
     tccactaccc ctcctccggt aacggctagg cagtggtcaa gagagctatt cattcgcttc       540
     ttggttcctg gtagggtaag tacctctggg tttggttctg ctgtggcctc gtggctcgac       600
     ttagttcagg ctccatagtc gtacttatgc cttttcgcga gtttaattct gggagtagca       660
     gctacactat gtgtagtagt gagattttgc ttaatttcgt acaggattgc taattttatg       720
     tcgatttttg ctggaatctg attccgaggc tctgatggtg tttcgttagc atagttcttg       780
     cactttataa cttttaaatc atttcttcgc ctgtttaaat atgttcagtg tctttcgcgt       840
     tcttatcgta gttgaattct aatattttcg gggactcgcg gtgcctatac tgttcgtact       900
     ttgtcgacag aacacgtgga cgatatcaga ctaagccttc agcttttcca tcattcagtg       960
     cacatgagtg gttaataatt gtatagctaa tttgctaatg tgtttcctag tgagtgtagc      1020
     gtgataattt tccccgaaaa ttgtccattc taacttgtaa tctgtgtact tgtcggccca      1080
     cgtgtgcgcc gattagcgtg ttccctgtcg tggttattac cattaaatag atctttttcc      1140
     tctgtgtaga aagaaccgtt gcacgacgta tatcgtgttt ttaattttca tgaaatagaa      1200
     ttatttcact tatctgaatt tttgtgaccg aactctgtat tgtgctgtag caatctgtaa      1260
     ccttgcttat ctaatagata tcattcctct gatcagaaag aatggttaca cgatatattt      1320
     cgcgatctta ttctcttcga aattgatttt gttaacttta tgcatatttt gtgttccgac      1380
     ttagtagagt gctgtattga tctaacaact ttaaccttct gtagttatct tctccctgtg      1440
     ctaaacgaac gccagagcga ccgtttttag atattattta atgaaatctt gatttaatgt      1500
     atagttagaa gttctaggga aactttaact tccgtctgta caccgcactt tgtggtctta      1560
     aaccaagtgc gtttgtttct gatagtttat catgagccta agccactagc ttgacacgtt      1620
     atggaagcga agtactattt cattgtgcgc gagtgaacct tcgatctgca ttctccacat      1680
     tgcttggctg tcgtcttggt gtattggtgt cgggtgcttg gtaagtacct gcatggcttg      1740
     gcgtatgaat ctgtgtgtga atgtgctgca attcctccgt tcccccctat gaaacgtgat      1800
     cgtaattaac ctgtactcaa ctttgcaggt gggcaatttt agggccatgt aattgtggat      1860
     attttgaata ttttgtaagg tgtgtttttt tattgtaatt ttaaaaaaag gtcttccccc      1920
     ttgttgttct tgttttgaac aataaattaa tttgttaaac tataatcctt ttgtgctaat      1980
     ttaaattctc ccctcatcat ttattttgga ttaatgtggg gtaatttgtt catgtatctt      2040
     gtgtctctgc tcccttctgg agagagaata tttgcgtttc cgttgccaac atttatgatt      2100
     tttgatttag atccatgact gcggatcatt atttaattgt gtgcagtttc ctctaaagat      2160
     tacagtaaag gtagaactgt ttgcttaact tatagaatca gagttttgct taagggaact      2220
     gtatacttcc gccgctgtgt gaatatcgcc gtaattagat tttgtgagca agcagtcaat      2280
     tgttaacttc acaaacacgg ctagttaaca gtcaaaagaa cagcgggcga gtttca          2336
//
ID   LTR-6_Hm    repbase;    DNA;    INV; 376 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR; LTR-6_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-376
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 376 BP; 123 A; 87 C; 63 G; 94 T; 9 other;
     tgttggacga accaacgaat cagacacaaa atccagcttt tacaatgact ttatttayac        60
     ttvttctwca caattcaatt caccggttcg gaaggcagtt ctgctgagaa garccggcaa       120
     gaaactcaac agttgctctt ttcaaamtat atacactcgt agttacaata tttaaatact       180
     aaytctaaca acaabttgtc ttgacaaaat ctkagaacgt aawgcgcccc gggtgccgtg       240
     tcgtctgtgc ttttattgga aacgcatcag tacagacgca gcacactagc gccacccaat       300
     acaatcggta acggaaacaa tatcaaatga cgtccccgca atgacagcga catctattat       360
     ggaaattatg ctaaca                                                       376
//
ID   LTR-6_LMi   repbase;    DNA;    INV; 2276 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 20.01, Created)
DT   16-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2276
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 111-111 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 2276 BP; 705 A; 569 C; 473 G; 529 T; 0 other;
     tgtgaactat gtcgataatc ctatggcagg agtcgccaag tgtgaactat gtcgttagtt        60
     atgaattata ttatattagg acagcaatta attatcttgg gtcgccacca tatttctcca       120
     aaatatggaa aattaaaatg ttactgatca gctatgatgt gatcatattt tcaaacatat       180
     aataaatatt cctactctat tgcaatgtat cagttgtacc aaacaaaaaa aatgtacttg       240
     aaaaattatt ggtaaactgt ggaatttaac tattctgttt cccctccaaa atagtgaaaa       300
     aggaatgttc ttaaatgaaa gacgatctgc tcaaaatcaa tttattataa ttaaacatga       360
     aaaataaatc agatgacatt tcctatcatg taaaacagat aatggtattc aaacaatctt       420
     ttacaaatgt taaaatattg agacacaaaa atgactggct gagtcaaagg tcggaggttt       480
     tgcaaaacag aatgctatta gattggctac acaggggctt gaaattatcg ttagccctaa       540
     gctccccaga gtaaataggc agatctcaaa agaataaaat aagggacaga atccaacaag       600
     tctgattcat ataacccccc agcaagtgcg tcaccttacc cacacagatg atcattgacg       660
     gcagcgtctc aggctcgcag gcagcaggcg gtgggagcgg atgagctgaa atttttatcc       720
     gaccgtaatt gctgcgacct gttaagcagg gtcgacatgt aacttaacac agcgtcactg       780
     gcgtcggcgt cgctaggcag ttgctgtgcg attctatcac gctagtagac taatcaatat       840
     tttgcatagg tgacacaaag gccacttggc acaaatcgat cagtcacttg cgtaataaga       900
     tctgtaaaaa aacagtgccc gattcgcaaa ggcgcgaatg ctcaaataga gacttctagc       960
     aaaacgaaaa ctaaactgtg gccgctcaca gcgtaaccac cggacaatgt aacgtccgtg      1020
     aagtaaacac aagttctaca aggtccgaat cttcggaatc aaacacaagt ctaaccagag      1080
     gaccgtttaa gacgatgtcc tccccgcgaa tctaaacgga gtattgcgtg tctcccgagg      1140
     tccgtacact tcggacgctc aaacaggagt ctcccgaggt ccgtacactt cggacgctca      1200
     acaggagtct cccgagtccg tacacttcgg acgctcaaac cggagtcctc gtgcctcctc      1260
     gcgctctgcc gcagctcacg gcaagtgacg ggcggccaca cccacgcgcg aaaagacgca      1320
     ccaatctctg ctaacggcta atagtcaaac caatcggatg gcgtagcgcc gttgacaaat      1380
     tgtttagctg tcatactaaa ataatctgcc gaatcaggac gcgttctctg cggctgccaa      1440
     gaggctccgc ccacgccacc aaagcttccc gcggatttca ccgttcccag ggtgaatgcc      1500
     ctgcaaggaa tttcagcttg ctcctagcta cggtcacacg acctaaaaat gttaacgttg      1560
     tgctatatat acagccgctg gagccaaacc cctggggtgc cagacgggca gaaagctttc      1620
     ctctcaacct aaccatttgt cacactaact atgttcaaac tctgctgcct tcaaggaagt      1680
     tttttttaga taacgcctaa gggcaatacg tctccataaa cagcccgggg cccagagcac      1740
     tctgctattg tttgtatccg gcaaattcct ctcttgcgaa acggccgaat gactaaaaag      1800
     gcagtccccg ctatcgccca ccgtaaaccg cggtccagca ttgtgtaaag cgtcccacac      1860
     actctaaaaa attctgccag gtatactccg ccgccccgga cgtagcgtcg gcgccgagca      1920
     ggtcaagcca gcccctctcg tccttccccg aaggcgagcg aaagttggtg ggagggggag      1980
     acctccaaga gcgtctctgc tctgcgcggc ctgaccgtac ccaacacgga aaaccacttt      2040
     ttagcagcca agctgcgcca ataaacatta aaatcccgaa attttcatat aaacatagaa      2100
     tgtactacaa tcccaggagc ccatcacccc tgatgtgtcc ccaaaggcac agaaatcaaa      2160
     ataaagaaag atctacagag aaaaatgtta catatttcaa taattagcgt aaagagaaag      2220
     atacagtaac acaaggttag tatgaaaaat agactaatta cagcccccgt ctcaca          2276
//
ID   LTR-6_PPo-I repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: internal portion.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-6_PPo-I.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1648
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2994-2994 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 1648 BP; 606 A; 87 C; 393 G; 554 T; 8 other;
     ggttatgggc ccaggatatt tgaagtttta aaatttatta atttttacga agaatttgaa        60
     acaagaaaat aaccatagca accagattgt tgattaaaaa tatgcatggc aaccaagatg       120
     gattcagcaa atattagttt gaagaatgaa gaaagtatgg aaaatagata gaagttcgag       180
     aaggagatat tggaaggaaa agttgtascg gagtttatga agttcgagaa ggtgatggta       240
     ctagggagag attattgaga gggagagagt aaaggaaatg aaagtcgaga agaaatagga       300
     agaattgtaa gttttgaaga aatagatact ggaaaagaaa aaaaaaatga aacaattgaa       360
     gctgaaacaa atgacagaaa tgccaatgaa acatgaaaat ctggtggaaa atttaagaag       420
     aatattgatg agaggattat tttaaaagaa tagaattaat gaagaaattk tgggaaacac       480
     aagaaattcg gaaaataaac attgatttgg atataggtga atactacaaa aataatgtag       540
     caaatgtagt acgaaaggac atacatgtat gaaaattgta tagaacatat acataatcag       600
     gtgagttcaa gtgtacgaaa cagatatttc aaaaattaag ggggtgtttt catttaaaaa       660
     taaataatta agggggtgat tgtaacataa ttgtttattt ttcattagac gaagttgtaa       720
     gttgtgaagt attgacatct ttagaaaaga acatttacag ttgttttgga aaattttstt       780
     atgtctcttt agtagttttt cctttgtgtt tttgttggtt tatttaatag ttttagtttt       840
     gktttagttt tattataaaa gtattwtatt gtgkttagtt caagaaaaga gatgacaaaa       900
     tttagggatg aagggggaaa tgtttaaatt tttattattg gtagtgaaaa aatttattat       960
     ttagttgaga agtataagga tgaggtatat tgttattgta taaggaggtt tttaataaac      1020
     ttaagaagtt tgggaatcga gtaggagatt ggtgttcttt atgagtgaac ttaaggaagt      1080
     taagttkatt agtcgagaag gtgtataagg tttttaaata aacttaaagt agttttagga      1140
     atcgagtagg agattggtgt tctttatata gagttgagaa ggtgtttaag gtttttaaat      1200
     gtgtaattga gtaggcgatt ggtgttataa gtaaccttga ggaggttaat attgagtata      1260
     atttgagatg ttttaagtat gttaaatata ggatagaaag gttgatttag cagttgatag      1320
     ataggctgtt gaggaagtca aagatgtttg gttgaggttt cgagtaggag ttggacaagk      1380
     gaggaggaat ctaagatggc aacattttat atatatgttt gagtggtgga agttattagt      1440
     ttggatatat tgagaaaaaa tattttatag aattgataaa gttctgttgt agtaatgtca      1500
     tgtatgagtt tataaaatgt taatgtacaa ataggtattt atggtggtat gggtaaattt      1560
     acaaagtcat gttagtgaat attttatttt tggtgtattg tattaaatgt tatacagggg      1620
     gttaacagtg tgtaaagtgt tgaggggg                                         1648
//
ID   LTR-6_PPo-LTR repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   LTR retrotransposon from Papilio polytes: long terminal repeat.
XX
KW   LTR Retrotransposon; Transposable Element; nonautonomous;
KW   LTR-6_PPo-LTR.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-289
RA   Kojima K.K. and Jurka J.;
RT   "LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2995-2995 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5bp TSD.
XX
SQ   Sequence 289 BP; 102 A; 44 C; 53 G; 90 T; 0 other;
     tgttggagtt tttatatgtt tgtatactgg caggcaacac tgtacacaca gaggatggtt        60
     ttttaatatt agaataatat ataatttaaa ttataaagaa ttctacattt gatgatatat       120
     tgtgagactt cacatctcga cacgtaccaa gtaacattgt aggactaata gactttgtat       180
     aaaatatggt tcagatattt taaatataat gatgattaac tagagaagaa agtgtttcaa       240
     tagccccaca cctccagagc cccggacggg ggaaagtaac cgtccaaca                   289
//
ID   LTR-7_LMi   repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-930
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 112-112 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 930 BP; 339 A; 147 C; 176 G; 268 T; 0 other;
     tgtaatattg cgttttcttt cttccgatca ggtgttggag tagtagttac tgttcgtagc        60
     cgctattaaa gttcactaac ggtacaataa tacaagaaaa taatttggtg gatctgacac       120
     atttaggtaa ctttataatt agaagactca aaaaaggaag cggaacctga ctttaaagtt       180
     tagcggcagt agtaatttgg aatgaaagca acacctgagc acaatattac acaaagaaac       240
     tagcagattc cgcgatgacc tttcttacca tgatgattat gttgactgga tgtagcagat       300
     gaagctgtaa aaactcttgc tgcattgtgt aaaatgatgc ttggttggct tggagcagat       360
     tgtactaact gaatgaccgt ttaaaaaaat gttaagttaa ctttcgtgac aaaaggctct       420
     ttaaatcgat cggatttcgt ttaattccga agatttcttt gcaggcatta ctagaaagtc       480
     acattcatga aaattacaag taatgagatc tcgaagtaca tctagtaaat tatagataca       540
     agtccaacaa tgggtccaag catcatatta cataatcaag attactgctg gaaaaataga       600
     aacacttcat gaattattaa aggtgggtca tttgaaataa gtaaaagatt tatacgtaac       660
     taaatatatt ttcatcatac ttcataagaa aaacgatctc acacacactt acaattaata       720
     atggagaagt ccctgacgtg cgactgttct caatgaggta ggaaagatga aagaccaagt       780
     tcacaaccgc gttctgggca gctcgtaaaa gacagatgaa catcaaaaaa tataagacga       840
     acgtaattag ctgccagaga aagctgtggt cagcgataag catcgtaaat aaattattta       900
     tcgaatgaaa atttttaatg taatactaca                                        930
//
ID   LTR-8_LMi   repbase;    DNA;    INV; 1764 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1764
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 113-113 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 1764 BP; 562 A; 302 C; 302 G; 598 T; 0 other;
     tgtaaggtaa cccttaaggt aagccttaca ttataacgag gaatgagctt cattttgaaa        60
     catattattc gtttgaacct gtttatagtg aatatgtagt aattaacttc ttatgtgact       120
     taattaatta tcgtgatgca caatgtatgt aggtaactta actgtgaaca ttttctgtca       180
     tttatttatt atctgtattg taattgttta tgtatatatt attttatttt atttgtactt       240
     tgtatgtttt ctatatgact gtgattactt gttatgttta atttgtcaat gtaaaatatt       300
     tctctgtaaa cgagatcaaa tatcgatctg aacagttatc gatatggctc ctcaggtcag       360
     agactttatt gtatagcagc gctcgcctgt gggagagcag gcaagcagca gtatctgccg       420
     ccccgtgacg tagatcagac gttcgtacgc ggtccgcgga gtgctcaaac aatataagta       480
     ataaagttaa aacaaagtga aagttataat ttgttataag tgcaacgata tgaaagttta       540
     tgtgaaacca gtgaacataa gtgaagtaag aattgatctt aatgaaacat ttattcgttc       600
     gttctgctga ggcagaaatt cgttacgtgt tcggtaaccg tcccagacgt ccgaaacgcg       660
     gtagcgtcat cgcggacgct aacggtcgcg attaattacg cgattcgcga agcatcacgg       720
     cgaactgcta gcaagctgcc aaaggaggag ccaccatcaa aatgatttct gtatgaattt       780
     atgtaccatt tatatgactg cagagtacca cgtcgctgga ctgataaata agataagtta       840
     aatgctattg gttgtaattt actgtgaatg catgtttaag ttttgtttaa aatacaagaa       900
     cattagacag tacttttgct atcttatttg aacaactaat taaccactca tgattagtat       960
     gacaatcctc aataatgcat gaataatatt tctacacaat tttacaatca agtgagtgtc      1020
     attaattgtt agagactgtg ataatcattc agttgagaca attttgctaa aattgatggt      1080
     agaagataac agacagttga attaatgaat aatttttcta tttcgttttg cactgagttc      1140
     aacaataata gccaccgcca catctatcct ataaagaacc aaactcgtac taaattgccg      1200
     tatgcatagc atcaattaag actgatttac ttaaatttcc tatttgcttg agtgaattaa      1260
     ttttatcaga tactgacttt agtggttgga ctgcacccac ttgccaatca cttgatgtta      1320
     aaaatcctac tattcataat tttctaaatt atcattacca ttagcgtact aattgagtcg      1380
     tacgcattgc acagacggag taagttaatt tctgctatct gtgtgtgcac agtctctgta      1440
     ggagattttg taaggaaagg aaaggtgagt gatcttttga aaagtttgtc agatagggcc      1500
     atagtatttg ttaattacac taattgtctt gcttaatatt ttcaaaattt aactacacca      1560
     cttgcattaa tcacgagttt aacgtaacca accacgaaat taaggtcagg tttgttatgt      1620
     tgctcaaaca ttacaacaac agccaccaca gttaataaca cgtaaatcaa aatttatttt      1680
     tttttacctc cactcacact tttcttcaat aaaataaaca ccttttcacc caatatcccc      1740
     aacaaaatat tttctttcct taca                                             1764
//
ID   LTR-9_Hm    repbase;    DNA;    INV; 631 BP.
XX
AC   .
XX
DT   01-APR-2014 (Rel. 19.04, Created)
DT   01-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   LTR retrotransposon from Heliconius melpomene: long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; LTR; LTR-9_Hm.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-631
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 631 BP; 172 A; 103 C; 127 G; 228 T; 1 other;
     tgtcggctgg tgataattta tttcaatatt aagaataaat tcataattag ttaattaatt        60
     acaaaagatg ttttaaggag taaaattaga attaacattt aagagttaat aaaatgctgt       120
     aattattgaa ttgatggttc tgtatttgtc agcttccggt ggcgccactt tgggcgcgtc       180
     accgttgtca atgtcattgt taatttataa aaggccgygc gggcgttgta cgctcagtcg       240
     aggctctgcc acggctcgga gcactactcg tgctccaccg ctggttaacc tcgactattt       300
     taattatgaa tgttgttaag acctatttgt aattatactg gactggagca gtgaaaggcg       360
     agtgttgata tatcggaaag ggatccctta agcctactcc tggggtcaca agtcccaggc       420
     actgctccaa gccatcattt aaagaataag ataatgttgt tattattttc cttgtaattt       480
     actatgtttc cagttattat ttggtttatt tatttgtttt agatttactt atttatttaa       540
     ttaagtattt cgagtagaac caaaggccag gacatggtcg gaggttctac tcgtttattt       600
     ttaatgtcta ttacgccttt tatttccgac a                                      631
//
ID   LTR-9_LMi   repbase;    DNA;    INV; 1151 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   LTR retrotransposon from the migratory locust: long terminal
DE   repeat, consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   LTR-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1151
RA   Bao W. and Jurka J.;
RT   "LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 114-114 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 1151 BP; 375 A; 198 C; 187 G; 391 T; 0 other;
     taaaacgcaa ctgctttaaa atgttcagtc caccgactca gtggttgtgg cgattacgtc        60
     ttaacagatc tccacagcat caaagttcag aacagtgtta ccttaatatc tcgtggatgt       120
     agaaacttct tataaaactg catctgcatt atcagcttac aggagtccct agaattcatt       180
     cagaatacgt gcagctggag taatgttctc cattttatgt gtgcgtcaaa attaaagcaa       240
     gaactcagag caaacaccag gtatgtgaat aaaactgttt aattcaacat aacttttacc       300
     ctacaatgca tcacaacaat aaatacatcg gtgcccaaac tggcatagtg acggcttcgg       360
     aagctattac aagactggcg atttggagct tttgtggggc ctccttatat acttttgtga       420
     acaatgccat gcattgttac aactattaaa gataggaaaa acaatgaatt ttgcaatgtt       480
     atgacaagat aataacagtt ctacatccca aaattaaggt actaactaat ttacatcaat       540
     tcatgataat accgatttcg taaatatgat taaagatctg aaatatgctt aactataaaa       600
     tacaacaata cattggtcat ttatactaat atcttgaaaa atagtgaagg gcaaatgttc       660
     ctaccattta cagaatgatg aaataaggta ttagttgttt tactggatac aagaacatcg       720
     aaatattttt ataggtttag tttatctaca atggtgccca tgctggcaag tttatattcg       780
     caatattaat caggtttgtg ttttcatggc cagttcctac tcaaacatac aatataatat       840
     atatctaaac agactacttt tgtttatgtt ttcataaaat gcatattagc aggttttagt       900
     ttcgtggcca tgtgctcttg cttattttcg tattttataa tgaaatacta tttgttttgt       960
     attcctagca atgtatgggt cttctatcat aacttacttt atttagaaat cgtgtatctt      1020
     attctaccca tactcagaag tcgcaaactg gcatttaaca gttgaggttc tattgaaata      1080
     atttgtttag cttgctattt gggtgataaa acggtaaaca tttagctctg tagcttgcct      1140
     attacatctc a                                                           1151
//
ID   LTR1_BM     repbase;    DNA;    INV; 411 BP.
XX
AC   .
XX
DT   15-OCT-2011 (Rel. 17.08, Created)
DT   15-OCT-2011 (Rel. 17.08, Last updated, Version 3)
XX
DE   Putative LTR: consensus.
XX
KW   LTR Retrotransposon; Transposable Element; LTR1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-411
RA   Jurka J.;
RT   "LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 12(8), 1462-1462 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 411 BP; 104 A; 77 C; 102 G; 128 T; 0 other;
     tgtcgtggat aacgactttt agtaatatta agacagttgt tttgactatt attttaaatg        60
     atgaaatgtt gttttgataa atgtcacaaa atgtagggta gactccgtgg cgccacagta       120
     taaaatggcg gtacgtggac agagtcgtgg cattccgtgt cagacagtca ttcagtccgt       180
     atcggacggt cggtccgtct cagtcagtga gtctctggca gtcagtcagt cggtctgtcg       240
     gtatgtgcaa cgaaactgtc ggtttatcct gtcattgtga aagttgtgtg tgttgagttt       300
     caataattat tattcaaaag gttttattga ctttttataa actgagttca accgaatacg       360
     agtgatgacg gaaactaccg ctcagccatc cctggcgcgc tgccgccgac a                411
//
ID   LTRMDG3_DM  repbase;    DNA;    INV; 267 BP.
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 2.01, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   LTR of MDG3 retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; DMLTRMDG3; LTR;
KW   LTRMDG3_DM; Long terminal repeat;
KW   mobile dispersed genetic element; retrotransposon MDG3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-267
RA   Avedisov N.S. and Il'in V.I.;
RT   "[Drosophila retrotransposon mdg3: general structure and
RT   functional domains of a full-scale copy].";
RL   Dokl. Akad. Nauk 344(6), 823-826 (1995).
XX
RN   [2]
RP   1-267
RA   Dzhumgaliev B.E., Mazo M.A., Baev A.A., Gorelova V.T.
RA   and Arkhipova R.I.;
RT   "Structure of long terminal repeats of transcriptionally active
RT   and inactive copies of the mobile dispersed gene MDG3 in
RT   Drosophila melanogaster.";
RL   Genetika 22(3), 368-377 (1986).
XX
RN   [3]
RP   1-267
RA   Ilyin V.Y., Arkhipova R.I., Gorelova V.T. and Schuppe G.N.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells.";
RL   Mol. Biol 19, 162-172 (1985).
XX
RN   [4]
RP   1-267
RA   Avedisov S.;
RT   "LTRMDG3_DM.";
RL   Direct Submission to Genbank (16-FEB-1996)S. Avedisov, Engelhardt
RL   Institute of Molecular Biol., RAS , Department of Genome
RL   Mobility, Vavilov Str., 32, Moscow, 117984, RUSSIA.
XX
DR   GenBank; X95908; Positions       1     267.
XX
CC   LTR from DMMDG3 retrotransposon.
XX
SQ   Sequence 267 BP; 91 A; 64 C; 41 G; 71 T; 0 other;
     tgtagtaggc tgcaccttct accctcttcc tttactctta gtcatacata cctaattata        60
     catagccaat ctagtcataa gcttatacac tcatacaccc atccttaaca tacaaatatt       120
     atcgagaaac ttatcgacta atcgactcgc cactctgcag agagcgcggc agtcagtcgc       180
     tgttgaacca agctaaagga cagatcaaaa ataaaagaga cacgtgaaat tgtattagaa       240
     tattaacttc tgtaaacggc ggctaaa                                           267
//
ID   Lycido-I    repbase;    DNA;    INV; 6638 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Lycido-I.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6638
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1323..2579
FT                 /product="Lycido-I_1p"
FT                 /translation="MSDSQWVHMEWPKIAASINHNKAVFDKSYKCVNKEVP
FT                 IKVETLETHIKIIIKEYNNICRIVTAIEDRLTETHKKHCHKILRSLNKRLI
FT                 HISIRHNLDIQIPEDLHSLVNINENQLQNLEESKGNIDIEIESDIESLPED
FT                 IEIKNNETKMPDQIEKDREYVRQLSTTIPEFDGKKSSLTRFITALRITDRT
FT                 KGTQEDLAGEIIKSKIIGPILYKVTNETTIRGIIDILNSNVKGESAEVVKA
FT                 KLLNVKQKGKTASQYTTEIDNLRKQLEAIYIDLGLSAETADNFATKESIQA
FT                 MTKNCEYEKLRIILEAGNYNTFSDAAGKYIQCTTEMTGSPSSVLYFYNGQQ
FT                 NYRGNNNYRGRGRGNRGSYNTNYNNRGNFRGNYRGNNRGRNNSNRGNRQNQ
FT                 NNNKNNNVRAIEAASTSQNTTASGN"
FT   CDS           2549..6202
FT                 /product="Lycido-I_2p"
FT                 /translation="YITKYYSFGKLNKTVHTINLNFNIFIHVHNNNTNTKL
FT                 TFLIDTGADISLIKNSSDNFQDIDQNTITNIFGVGEGSTTSLGLVNIELAT
FT                 NNYIIPHNFHIVNSNFPIPTDGIIGIDFIKKYNCKLDFNTEDDWLILRPDN
FT                 ITCPINVPITHTIGNNSTLLPARSEVVRQIKLDTSDEQILIPNKEIDTGIF
FT                 IANTITTSKNTVIRIINTTKRNQIINIDKIQFKSLNKYEIVKTIDNERNEH
FT                 ILQKLNKNFPPLFKKQLNKLCTKYTDIFGLETESLSTNNFYKQKLRLKDDE
FT                 PIYIKNYRIPESQKEEIHRQVNKLIDDKIVEPAVSEYNSPLLLVPKKSLPG
FT                 SATKRWRLVIDYRQINKKLLSDKFPLPRIDDILNQLGRARYFSCLDLMSGF
FT                 HQIELDENSRNATSFSTSNGSYRFTRLPYGLKIAPNSFQRMMTMAFSGLEP
FT                 SQAFLYMDDLIVIGCSENHMIKNLTNVFDLCRKNNLKLHPDKCSFFMHEVT
FT                 FLGHKCTDRGILPDDKKYEVIDKYPVPTDADSARRFIAFCNYYRRFIKNFS
FT                 DYSRHITRLCKKNVKFEWTSECQNAFTYLKQSLIQPTLLQYPDFSKEFCII
FT                 TDASKQACGAVLTQTYDEIQLPVAYASRSFTKGESNKNTTEQELAAIHWAI
FT                 NYFRPYIYGKHFVVKTDHRPLTYLFSMRNPTSKLTRMRLDLEEYEFTVEYL
FT                 KGKDNHVADALSRITIDELKNMQKQVLKVTTRQQSRQNNCAVNEKEQEILP
FT                 RQILENASKPNVYEVINNDDVRKIVTLHITDTLCFFKHGKKIIARIEISDL
FT                 YTNGTLDLGQFFHRLEKEAGILGISQLKMAPSGKIFELISTETFKNMGNKF
FT                 LKQIRVALLKPVTTISNDIEKEAILSTFHNDPIQGGHTGISRTLAKIKRHY
FT                 YWKGMINFISQYIRKCPECQKAKTTKHIKTPLTTTDTPIKAFDKVIIDTVG
FT                 PLPKSDNGHEDIITLICDLTKYLVAIPIANKSASTVAKAIFESFILKYGPM
FT                 KTFITDMGTEYRNTIMNELCKYLKINNLTSTAHHHQTLGTVERSHRTLNEY
FT                 LRSYISVDKTDWDVWLNYFVYCFNTTPSMAHNYCPYELVYSKTPNLPKELS
FT                 IKNNIDPIYNIDNYAIESRYRLEMAYKRARIMLENHKRKNKEYYDRKVLDK
FT                 EIIINDKVLLRNETGHKLDNRYLGPYIVVGIEEPNNIIIKDDKNKTQKVHK
FT                 DRLKTFNE"
XX
SQ   Sequence 6638 BP; 2802 A; 1186 C; 1000 G; 1650 T; 0 other;
     tggcgaccgt gactcggtct cgagtctgtc tctgtgttgt gtgtgtgtgg ataaaaatta        60
     tatatacatt gtgaattaaa atgtgcaagt tgttacttgt tctatgcaaa attaatacgc       120
     aaaattaatt acaataatac aaaatgaata cacaacaaca aatgttctat taaaacaaac       180
     aacgcacagc caaacgcaca aaaacacaca aaacacacag acacaagcgg caattgatgg       240
     cagacgatcc acaattgacc gaggcgcaac ccgaggtaca tagggaccag ccaacgctgg       300
     aggaagcgct ggaattaaac cccgccgatg aaccacgccc actcacaata gctgagtacc       360
     gggcacgtca ggagaagcac caacccagga aacataaacg ctctggacat agagcgaaat       420
     tactacaaca acgccgactg gtcaaggaaa tgaccaagtt ggccaaggag gaatcagccc       480
     ggcaacgcta caaagagcgt ttggaaatta taaaaaaaga acttcgccaa agtgcgaaga       540
     cacgcaaacg ggctgcttaa atgcaaatgc cccaatttgc catagattta aactaaaccc       600
     aagccgatgc gggaaaccgc tgcttgaaaa aactaacaac aaaactgtca ggctatatac       660
     taacaaatgt gtttggagat ttttttaaat tctaatgaaa tgtaaacttt gacttgtgag       720
     ccaaccacat taaaactatc aaatttccat gtctctggca cttgtatata tttaatacaa       780
     gttgcaaata tttaaagtaa attcattaaa tttcaatatt cactataaaa acttttcaaa       840
     ctttatttcc aataaattga gagattaaac agatttcatt ttttctttat tgcaaattat       900
     taacatttcc aaaatgggtt ctactgaatc aaaagtagat cacccaacag ccaatgtagt       960
     taatgaagta agaatagttg atcacaaaga tgaactacaa aatatattca tcttgttatt      1020
     gattatgact gtcatatcaa ttttgagttt gatccttaag atctatcagg aacataataa      1080
     acgacttaag aaaagatatc agagccgtgc agatggccta gacaagatat aaactgtact      1140
     tacgaaataa aacaatatag atatgactta gaagactata cagaatatag acaacagtat      1200
     aaaataccat ttttatcaag gaaaaacaca ataggtagac atccttcttg tcaaatacat      1260
     ttatatgatt ccgaattcca ctttagtaga caaaattgtt gcgaatataa aagaaacacc      1320
     aaatgagtga ttcacagtgg gtacacatgg aatggcccaa aatagcagcg tcaataaacc      1380
     ataataaagc agtatttgac aaatcatata aatgtgtaaa caaagaagta cctattaaag      1440
     tagagactct agaaacacac ataaagataa taataaaaga atacaataac atttgtagaa      1500
     tagtcacagc tatagaagat agattaacag aaacacataa gaaacattgt cataaaatac      1560
     taagatctct caataaaaga ttgatccata ttagcatcag acataatcta gatattcaaa      1620
     tacctgaaga tttgcattca ttggttaata taaatgaaaa ccaattacaa aatcttgagg      1680
     agtctaaagg taatatcgac attgaaatcg aaagcgatat tgagtcatta ccagaagaca      1740
     ttgaaataaa aaacaacgaa accaaaatgc cagaccaaat tgagaaagat agagaatatg      1800
     ttcgacaatt gtcgacaaca ataccagaat tcgatggcaa aaagtcatca ttgacacgct      1860
     ttataacagc gttaagaata acagatagaa caaagggaac tcaggaagat ctagcaggag      1920
     agataataaa atcaaaaata ataggaccaa ttttatacaa agtaacaaat gaaacaacca      1980
     tcagaggcat cattgacata ctaaatagta atgtaaaagg tgaatcagct gaagttgtaa      2040
     aagcaaagtt actaaatgtt aaacagaaag ggaagacagc ttcccaatac accactgaaa      2100
     ttgacaattt gcgtaagcaa ttagaagcaa tatatattga cttaggcctt tcagccgaaa      2160
     ctgcggataa tttcgcaact aaagagtcaa tacaagcaat gactaaaaat tgtgaatacg      2220
     aaaagctacg aataatactc gaagctggta attacaatac attcagtgat gcagctggaa      2280
     aatacataca atgcaccact gaaatgacag gcagtcccag tagcgtccta tatttctaca      2340
     atggacaaca aaactacagg ggaaataaca actaccgagg ccgaggccga ggtaaccgcg      2400
     gtagttacaa taccaattac aacaacagag gtaatttcag aggaaattac agaggaaaca      2460
     accgaggaag gaataattcc aaccgaggta atagacaaaa tcaaaataac aacaagaata      2520
     acaatgtccg agcaatcgaa gctgctagta catcacaaaa tactacagct tcgggaaact      2580
     aaataagacg gttcacacaa tcaatcttaa tttcaacatt tttatacatg tgcataataa      2640
     taatacgaat acaaaattaa catttttaat agatacagga gcagatattt cacttatcaa      2700
     aaacagctca gataatttcc aagacattga tcaaaatacc ataacaaaca tttttggagt      2760
     tggagaaggt tcaacaacct ctctaggtct agtaaacata gaactagcaa caaataatta      2820
     cataattcca cataatttcc acatagttaa ttctaatttc ccaataccca ccgatggaat      2880
     catcggaata gactttataa agaaatacaa ttgcaaatta gattttaata cagaagacga      2940
     ctggttaatt ttgcgaccag acaatatcac ttgtccaata aacgtaccaa taacacatac      3000
     aataggcaat aactcaacgt tattaccagc ccgatccgaa gtagtccgac aaattaaatt      3060
     agatacatcc gatgaacaga tcctcatccc taataaagaa atagacacag gcatctttat      3120
     tgcaaataca attacgacta gtaaaaacac agtaattcgt ataataaaca caaccaaaag      3180
     aaaccaaata ataaatattg ataagataca atttaaaagt cttaacaaat atgaaatagt      3240
     aaaaacaata gataacgaaa gaaatgaaca tattttacaa aaattaaaca aaaatttccc      3300
     accattgttt aaaaagcaac taaataaatt atgcacaaaa tacacagata tattcggact      3360
     tgaaaccgaa tctctaagta ccaataattt ttacaaacaa aaattaagat tgaaagatga      3420
     tgaaccgata tacatcaaaa attatagaat accagaatca cagaaagaag aaatacacag      3480
     acaagttaac aaattaattg atgataaaat agtagaacca gccgtatctg aatacaacag      3540
     cccattgcta ctagtaccga agaaatcatt accaggttcc gcaacaaaac gatggcgact      3600
     ggtaatcgat tatagacaaa ttaataaaaa gctcttatca gacaaatttc cacttccaag      3660
     aatagacgat attcttaatc aattaggccg agcaagatac ttctcgtgcc tagacttaat      3720
     gtcaggattc catcaaatag aactagatga aaactcaaga aacgcaacgt cattttcaac      3780
     gagcaacggc tcctatcgct tcacacgatt accctatggt ttaaaaattg cgcccaattc      3840
     attccaaaga atgatgacaa tggcattttc tggattagaa ccttcacagg cattcctgta      3900
     tatggatgac ttaatagtca tcggttgttc cgaaaatcat atgatcaaaa atttgactaa      3960
     cgtctttgac ctatgtagga aaaataacct aaaactacac ccagacaaat gttcattctt      4020
     catgcatgaa gtgacttttc taggtcataa gtgtactgat cgtggtattt tgccagatga      4080
     taagaaatac gaagtcattg acaaataccc cgtccctacg gacgctgaca gcgcaagaag      4140
     attcattgca ttttgcaatt attatagacg tttcatcaaa aatttttctg actactctcg      4200
     tcacataaca aggttatgta aaaagaatgt aaaattcgag tggacttcag aatgccaaaa      4260
     tgcattcaca tatctcaaac aatcattaat acaacccacg ttattacaat acccagattt      4320
     cagcaaagaa ttttgcataa taacagatgc aagtaaacaa gcttgcgggg cagtattaac      4380
     acaaacatac gatgagatac aactaccagt agcatatgcc tctcgcagct tcactaaggg      4440
     agaaagtaac aaaaacacta cagagcaaga attagcggca atacactggg caattaacta      4500
     cttcagacca tacatatatg gcaaacattt cgttgtaaaa acagatcata ggcctttaac      4560
     atacctcttc tcaatgagaa atcctacttc caaactcact agaatgagac ttgatttaga      4620
     agagtatgag tttacagtag aataccttaa aggaaaagat aatcatgtag ccgatgcgtt      4680
     atcaagaata accatcgatg aattaaaaaa tatgcaaaaa caagtcttga aagtcactac      4740
     aagacaacag agtagacaaa acaactgcgc agtaaatgaa aaagaacaag aaattttgcc      4800
     aaggcaaata cttgaaaatg cttctaagcc caacgtatat gaagtcatca ataatgacga      4860
     tgtacgaaaa atagtgacct tgcatataac tgacacatta tgtttcttta aacatggtaa      4920
     gaaaattata gcaagaattg agattagcga cctatatact aatggaactc tcgacttagg      4980
     tcagttcttc cacaggcttg aaaaagaagc cggtatactt ggtatcagcc aactcaaaat      5040
     ggcaccgagc ggaaagatct ttgaattaat ttcaactgaa actttcaaaa atatgggcaa      5100
     taaattttta aaacaaataa gagtagcgct actcaagccg gtgaccacaa tatctaatga      5160
     tattgaaaaa gaagcaatac tgtctacatt tcacaatgat cctattcaag gaggtcatac      5220
     tggcatttca agaacgctag caaaaatcaa aagacattac tattggaaag ggatgataaa      5280
     tttcatatct cagtacatac gtaaatgtcc agaatgtcag aaagcaaaaa caacaaagca      5340
     cataaagacc cctttaacaa ctacagacac accaattaaa gcatttgaca aagtcattat      5400
     tgacacagtt ggaccattac ccaaatcaga caatggtcat gaagacataa ttactttaat      5460
     atgtgatctg accaaatacc ttgttgctat ccccatagca aacaaaagtg ctagtacagt      5520
     agccaaggct atattcgaat cattcattct caaatacggt ccgatgaaga cgttcatcac      5580
     cgatatggga acagaatata gaaacacaat catgaacgaa ctttgtaagt atttgaaaat      5640
     aaacaatctt acatcaacag ctcaccacca tcaaacactt ggtacggtag agagaagcca      5700
     cagaacacta aatgaatatc tacgttcata catatcagtc gataaaactg attgggacgt      5760
     atggcttaac tatttcgtat attgtttcaa tactacacca tcaatggcac ataactattg      5820
     tccatatgaa ttagtataca gtaaaacacc taatttacct aaagaattaa gcattaaaaa      5880
     taacatagac cctatataca acatagataa ttacgcaata gaatctagat acagattaga      5940
     aatggcatac aaaagagcca gaataatgtt agaaaaccat aaacgtaaaa ataaggaata      6000
     ctacgatagg aaagtactag ataaggaaat aataattaac gataaagttc ttttaagaaa      6060
     tgaaacagga cataaactag acaatagata tttaggacca tatatagtag taggaataga      6120
     agaaccgaac aatataataa taaaagacga taaaaacaaa actcaaaagg ttcataagga      6180
     tagattaaaa acttttaacg aataacgtaa tttttcatta aataacaaat aaatacgaaa      6240
     catttaaact ctcaatttta ttcaaaagaa aacacacaaa ttatttttat catcatcatg      6300
     caaccgattg gtctgatcaa ccacatcaac agaatatggt aatgatgaca ataatataca      6360
     aaaattaaaa aatacaaaaa tttcatgaat ttacgaattt acaaagagac acaatatttt      6420
     taaatttaca caatacatat aaataaataa cagatcaaaa tacaatttta tatacacaaa      6480
     aataaaaaaa aaaaaaaaaa tatatgtatg ttataataaa aaaaaaaaaa aacacaacac      6540
     aaaacaaaaa tagcaaaaat ataaaataat gaaaaaaaaa atataataat tttttaaaaa      6600
     tgactacata tattacgtca tttctttaaa aagggagg                              6638
//
ID   Lycido-LTR  repbase;    DNA;    INV; 426 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Lycido-LTR.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-426
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 426 BP; 158 A; 91 C; 66 G; 111 T; 0 other;
     tgtagtgtat ctaccctcaa tatgtagagt agagttaata tgtaagtaaa gtatatacat        60
     tgtgacactt tgtcacataa attataataa acacaaataa tatcaaaaga ccaccaacac       120
     ctacatgaac actccagctc ttgaaatacg atctaacgct tatacataag ccgatcgcgg       180
     agcgtgagaa cgctgagcat gcacttagca gctcaagtgg tcaagccata cataacatat       240
     gcatgccctc tgcatacaca tgtatatgta tataatataa caaacacata gtcttaagca       300
     caccatgtac gggtagctgt acccaagaac agcaatatga attcattcaa ataaaacgat       360
     tcaagcggag cagacgctct gagctattca atatctatta cactgagcta aactatttct       420
     attaca                                                                  426
//
ID   LYDIA_I     repbase;    DNA;    INV; 6060 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   27-MAY-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   LYDIA_I is an internal portion of LYDIA, a gypsy-like endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; internal portion; LYDIA; LYDIA_I;
KW   LYDIA_LTR; errantivirus.
XX
NM   LYDIA_I.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-6060
RA   Pfeifer A.T., Ring M. and Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-6060
RA   Pfeifer A.T., Ring M. and Grigliatti A.T.;
RT   "LYDIA_I.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
RN   [3]
RP   1-6060
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (27-MAY-2021).
XX
DR   [3] (Consensus)
XX
CC   The original sequence is AF177773.
CC   [3] Replaced by a consensus. ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..1648
FT                 /product="LYDIA_I_1p"
FT                 /note="gag."
FT                 /translation="MAQGQANVVVITHDPDTIFKALRLVPEFDGNPNILTR
FT                 FINICDRIVVQYLSDQPGNELANLCLLNGILNKITGSAASTINSNGIPDSW
FT                 LGIRTALINNFSDQRDETALYSDLSLAKQGTKTPQEFYDQCQTLFSTIMTY
FT                 VTLHEPISTTVEAKRILYKKIAMQSFVRGLNEPLGSRIRCMRPETIEKALE
FT                 YVQEELNVIYLQQRNDTPKSVNTPRAFNYVPPPINFNQPRAQNIVSHPPNW
FT                 PAPVGFKSHQPPPQPFKFNPLQNQQFQQRIPNRTQQIFRAQPPGYNPHSNV
FT                 FRLPPRNVPPQNLGPKPMSGIQHFTPKPMLSGHDWRKSGNPPPSNYFKPRE
FT                 MNVNECASYDDSYYPEYCYEHEDSYFYNNYYNDYNPYATEECTYNTTYYDT
FT                 TNDIQITEDIEPQPGTSSSDPDFQLDPVSKRPK"
FT   CDS           1558..5280
FT                 /product="LYDIA_I_2p"
FT                 /note="retropepsin, reverse transcriptase,
FT                 ribonuclease H, and integrase."
FT                 /translation="YSDYRGYRTTTWYKFIRPGFSVGPGVKKTKIELNLQT
FT                 QRQLPYISISDPPLKLLIDTGANQSFISPEAVELYFPNFPLNYDPFEVTNV
FT                 HAVSRNDYSITLPSFAEFNDPNPVKLFVYRFHDYFDGLIGLDLLTRWEAKI
FT                 DLKDRKLITQFASNPIRMYNSCNVNLYEDIIPAKSTKLIKIPINTPDGAAL
FT                 VSEQTICNCIIHECLTNVKNNRGYIEIENSTPNDIILSLDRPAHAELFNTE
FT                 YTRTEQPHSRVSEVISRLRTEHLGPEEKANLTTLCSRYADVFYIEGETLTF
FT                 TNKIKHRIRTTDEVPVYTKSYRYPFIHRQEVRDQISKMLNQGIIRPSDSAW
FT                 SSPIWVVPKKMDASGKQKWRLVVDFRKLNDKTIDNKYPIHNISDQLDKLGR
FT                 CQYFTTLYLASGFYQVEIDPLDISKTAFNVEHGHFEFLRMPMGLKNSPSTF
FT                 QRVMDNVLGDLQNNICLIYLDGIVVFSTSLQEHMVNLEKVFQRLRESNFKI
FT                 QMDKSEFLKLETAYLGHIISGDGVKPNPDKISAIENYPIPKTPKEIKQFLG
FT                 LIGYYRKFIPDFANLTKPLTQCLKKGKKITLDPQYISCFEKCKTLLSNDPI
FT                 LQYPDFEKDFNLTTDASNVAIGAVLSQGPIGSDKPVCYASRTLNDSELNYS
FT                 TIEKELLAIVWATKYFRPYLFGRKFKIITDHKPLQWMVNLKEPNSRLTRWR
FT                 LKLSEYDFTVVYKKGRHNTNADALSRIEIHNEDLNSIVDELCSLIPNPTDE
FT                 PPTIVNSSTETAHTSLEHPILEIPITDEPLNKYHRQIHFTIVNDVKRKPHV
FT                 TKPFETHTRIAIQLSKSNLENDVINAIKEYVSPKVKTALLITPPLAMYSII
FT                 PVIQKTFRSSSLNLVLTKLEIENVKDYLRQQEIIRNYHDGKTNHRGITECY
FT                 LSLSRKYYWPKMKDQITKYINECIICGQAKYDRNPIKPQFNIVPPATKPLE
FT                 IVHIDLFTVHNEKYITFVDVFTKYGQAYHLNDGTAVSILQALLKFCTHHGV
FT                 PLTLITDNGTEFTNQLFSEFTRLHKINHHRILPHSPNDNGNIERFHSTILE
FT                 HLRILKLQNKDEPIVYLIPYAIIAYNSSIHSFTKCRPFDLLNGHFDPRDIL
FT                 DIDFTHHLLQQYSQNHKAQMNEVYKIINESSLTNRTALIEQRNINREPEIE
FT                 YTPQQQVFIKNPFANRQKVAPRFTQDTVLADLPIHIYTSKKRGPVAKSRLK
FT                 RGHKVPQLLNDSTVTDPSRDNASRDKSFSYT"
XX
SQ   Sequence 6060 BP; 2088 A; 1404 C; 985 G; 1583 T; 0 other;
     ggcgcagtcg gtaggatcct cgcgggccgg ttcgcgtcct tagagtcctt gcaaatcgat        60
     attcgcgtcg cgagtcgccc gggtggcttt caagcaccgt catcgaggtt ccagaatcta       120
     cggtccagca gcagttccag aggagagtca agacctcgac tcacgaaaga gaaaccagaa       180
     tgaagtatat gtaagtacac ttgaattgtt ctcgtgttgc ttgcttcctt tgtcctagtt       240
     atatccattc tccaaaattt tccatcgcga aaattcgtac cgggaacctg catctcggca       300
     ggctcgttgg aatacaatag atttaattag aaatttaggt agtagccctc cgcagagttc       360
     agaaaatatg gctcaaggac aggctaacgt agtagtaata acccatgacc cggacacgat       420
     ttttaaggca cttcgcctag tcccggagtt cgatgggaac ccgaatattt taactagatt       480
     tattaatata tgcgatagaa tagttgtaca atatttaagt gatcagccag gaaacgaatt       540
     agcgaactta tgtcttttaa acggaatact aaataaaatt acgggatcag ccgctagcac       600
     tattaattcc aacggtattc cagacagctg gttaggtatt agaacagcct taataaataa       660
     cttttccgat cagcgtgacg aaactgctct ctatagtgac ctatctttag ccaaacaggg       720
     tacgaagaca cctcaagagt tttacgacca gtgccagaca ctattcagta ccataatgac       780
     ctatgtaact ttgcatgaac cgattagtac cacagtagaa gctaagagaa tattatataa       840
     aaaaattgct atgcagtcat tcgtgagagg cttaaacgaa ccattaggat cgcggataag       900
     atgtatgcga ccagagacta tagaaaaagc actcgaatat gttcaagagg agttgaatgt       960
     aatatattta caacaacgta acgatacccc gaaatcggtt aacaccccta gagcgttcaa      1020
     ctatgttcca ccccctataa atttcaacca accacgtgct caaaacatcg ttagtcatcc      1080
     ccctaattgg ccggcaccag taggttttaa atcacaccaa cctccgccgc aaccctttaa      1140
     attcaacccc ctacagaacc aacagttcca gcaacgtatc cctaaccgta cgcagcaaat      1200
     atttcgcgct caaccacccg gttataaccc acatagtaac gtctttcgac taccacccag      1260
     gaacgttcca ccacaaaatc taggcccaaa acccatgagc ggcatacagc attttacacc      1320
     taagcctatg ttatcaggtc atgattggcg taaatcaggc aatccaccac caagtaatta      1380
     tttcaaaccg cgtgaaatga atgtgaatga gtgcgcgtca tacgacgact catattaccc      1440
     agagtattgt tacgaacacg aagatagcta tttttacaat aattattaca acgattacaa      1500
     cccatacgct acagaagagt gcacctataa tactacttat tatgatacga caaatgatat      1560
     tcagattacc gaggatatag aaccacaacc tggtacaagt tcatcagacc cggattttca      1620
     gttggacccg gtgtcaaaaa gaccaaaata gaattaaatc tccaaactca gagacagcta      1680
     ccatatattt ctatttcaga tccaccttta aaattattaa ttgacacagg tgcaaaccaa      1740
     tcgtttatta gcccggaagc agtcgagtta tattttccaa actttccact aaattacgat      1800
     ccatttgaag tcaccaatgt gcacgccgtt agtagaaacg attactccat taccttaccc      1860
     agttttgctg aatttaacga ccctaacccg gttaaattat tcgtataccg ttttcatgac      1920
     tatttcgacg gattgatagg attagatcta ttaaccagat gggaggccaa aatagactta      1980
     aaagaccgca aattaattac acaattcgcc tcgaacccaa tacgcatgta caattcttgt      2040
     aatgtcaacc tatacgagga catcatacca gcaaaatcga caaaattaat taaaattccc      2100
     attaacaccc ccgacggcgc agcattagtt agcgaacaaa ctatatgcaa ttgcattatt      2160
     cacgaatgcc ttactaacgt aaaaaacaat cgcggttaca ttgaaataga aaactctaca      2220
     cccaacgata taatattgtc tctcgaccga cctgcacatg cagaattatt taataccgag      2280
     tacactcgca ccgaacaacc acactcacgc gtatcagaag ttatatcgcg tttgcgcacc      2340
     gaacacttag gccccgaaga aaaagcgaac cttaccacct tatgttctcg ctatgcggac      2400
     gttttttaca ttgaaggaga aacacttact tttacaaata aaatcaaaca tcgtataaga      2460
     acaaccgatg aagtccctgt ttacacaaaa agctatcgat acccgtttat acaccgacaa      2520
     gaagttaggg accaaatttc gaaaatgctt aaccaaggta taataagacc atcagactca      2580
     gcatggagct caccgatttg ggtcgtccca aagaaaatgg acgcgtctgg taagcaaaaa      2640
     tggcgtctag ttgtcgactt tcggaaactc aacgacaaaa ctatagataa taaatatccc      2700
     atccataata ttagtgacca acttgacaaa ttaggtcgtt gccaatattt tacaactctt      2760
     tatttagcca gtggttttta ccaagtggaa attgaccccc ttgatatttc gaaaaccgca      2820
     tttaacgtcg aacatggtca tttcgaattt cttcgaatgc ccatgggact taaaaactcg      2880
     ccttccactt ttcagcgagt tatggacaat gttctcggag acctccagaa taacatctgc      2940
     ctaatctatc ttgatggaat agtagtcttc agcacttctc tccaagagca catggtcaac      3000
     ctcgagaagg tattccaaag acttcgagag tctaatttca aaatacaaat ggacaagtcg      3060
     gaatttctta agcttgaaac tgcttatctc ggacatatca tcagtggaga tggagtaaaa      3120
     cccaatcccg acaaaatttc ggctattgaa aattatccta ttcccaaaac tcctaaagaa      3180
     attaaacaat ttttaggtct tattggctat tatcgaaaat tcataccaga ttttgctaat      3240
     ttaactaaac cacttacaca gtgcttaaag aaaggtaaaa agattacgtt agacccccag      3300
     tacattagtt gtttcgagaa atgtaaaaca ctcttaagta atgatcctat tctgcaatat      3360
     cctgacttcg aaaaagactt caacctgacg accgacgctt caaacgtcgc tattggagcc      3420
     gtgctatccc aaggtccaat tggatctgat aaacccgtat gttacgcctc gcgaacatta      3480
     aacgatagtg aactcaacta tagcaccata gaaaaggaac ttctagccat agtttgggct      3540
     actaagtatt ttcgcccata tctgtttgga cgaaaattta agataataac cgaccacaaa      3600
     ccactgcaat ggatggtaaa ccttaaagaa cctaattcaa gattaaccag atggcgttta      3660
     aaacttagcg aatacgattt caccgtggta tataaaaaag gcagacataa caccaatgcc      3720
     gacgctttat ctcgtataga aatccacaac gaagatctaa atagcatagt cgacgaatta      3780
     tgttctctca taccgaaccc tactgatgaa ccgcccacta ttgtaaactc ttcaaccgaa      3840
     accgcacaca ctagtttaga acatcctata ttagaaattc caatcaccga tgaacccctt      3900
     aataaatacc ataggcaaat tcatttcacc atcgtaaatg acgtcaaaag aaaaccgcac      3960
     gtaacaaaac ctttcgaaac tcacacgcgc atagccattc agctctcaaa atcaaactta      4020
     gaaaacgacg tcattaatgc gattaaagag tatgttagtc ctaaagtaaa aaccgccctt      4080
     ttaataactc cacctcttgc catgtattct attatccctg taattcaaaa aacgttcaga      4140
     agttcttcat taaacctcgt acttacaaaa ctagaaatag aaaacgtcaa ggattacctt      4200
     cgtcaacagg aaatcattcg caactatcat gatggaaaga cgaatcaccg tggaatcaca      4260
     gaatgttatc tatctctatc acgaaaatac tattggccca aaatgaaaga ccagattaca      4320
     aaatacatca atgaatgtat tatctgcggc caagcgaaat acgacaggaa ccctatcaaa      4380
     cctcaattta atatcgtacc acctgcaaca aaaccactcg agatagttca catagactta      4440
     ttcaccgtcc acaacgaaaa atatatcacc ttcgtagatg tattcacaaa atatggacag      4500
     gcgtaccatc tcaatgatgg cacagctgta agcatattac aagctcttct taaattttgt      4560
     acccatcacg gagtaccatt aactctaata acggataacg gaaccgaatt tacgaaccaa      4620
     ctcttttcag aatttacgcg gcttcacaaa ataaaccatc accgtatttt acctcactca      4680
     ccgaacgata atgggaacat agaacgcttt cattccacaa tacttgaaca tcttcgaatt      4740
     ttaaaattgc aaaataaaga tgaacctata gtctatctaa taccatatgc tataatagct      4800
     tataacagtt ctatccacag tttcacaaaa tgtaggccgt ttgacttatt aaatggacat      4860
     tttgacccta gagatatatt agatatagat tttacacatc atttactaca acaatatagc      4920
     caaaatcata aggcccagat gaacgaagtt tataaaatta taaacgaatc atctttaact      4980
     aatagaaccg ctctcataga acaaagaaat ataaatcgtg agcccgaaat agaatacact      5040
     ccccaacagc aagtcttcat taaaaatccg tttgctaacc gtcaaaaagt tgcaccacga      5100
     tttactcaag acaccgtctt agcagatttg ccaatacaca tttacacctc aaaaaaacgt      5160
     ggtcctgtag ccaagtctag actgaaaaga ggtcataaag ttccccaatt gttaaatgat      5220
     tctactgtca ctgacccttc gcgagacaac gcttctcgag acaaatcttt tagttatact      5280
     tagtaataaa taactttaga aataactaca atagaaaatg gttttactca tacatcgagt      5340
     atgcaccact ctagtataga tatcaatatg ttagaattaa tgttaggtaa gctagaactc      5400
     atttataacc tagatgagat attaagagta gaattaaaat agtactacga agcaatcatc      5460
     cccagtttac acttctctga taaattcata gtaatggttt ttaaattccc tgtattttta      5520
     atatatccag aatagctata acacccgaca ggcctttcta ccttcctatc cttacattgc      5580
     aatcaacaca ggtacattca ggctgtacat ggaggctgaa tgcccgaagg ttgggagttg      5640
     gtatctctgt aagaaacttc gcatcagata cgcgtcagcc caaactacat cccacagctc      5700
     attataaaac aagctttgct catgactcct gccagttcaa aaccgtctca tcagctactg      5760
     aagccctgga ataattagac gaccggcatt atgccgtatc ttttccacat tccaccaaac      5820
     taatggacat accaagtaac actgaaaaac aagtatcgtt gtaccaagac acgtagtctt      5880
     gactcaacag atcaccgaag tctgcacagc atccagaaca aagtctgtac agcatcctta      5940
     catcaaaagg ataaccacat gacccacatg gaaatagcaa agaatcagga agccccagat      6000
     aatattccag cgacattttc actcaacgtt cgaaaatggt cgcagatcta cgaggggagg      6060
//
ID   LYDIA_LTR   repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   27-MAY-2021 (Rel. 26.06, Last updated, Version 3)
XX
DE   LYDIA_LTR is a long terminal repeat from LYDIA, a gypsy-like
DE   endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; LYDIA; LYDIA_I; LYDIA_LTR; errantivirus.
XX
NM   LYDIA_LTR.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-303
RA   Pfeifer A.T., Ring M. and Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-303
RA   Pfeifer A.T., Ring M. and Grigliatti A.T.;
RT   "LYDIA_LTR.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
RN   [3]
RP   1-303
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (27-MAY-2021).
XX
DR   [1] (Consensus)
XX
CC   The original sequence is AF177773.
CC   [3] Replaced by a consensus. ~99.5% identical to consensus. 4-bp
CC   TSDs.
XX
SQ   Sequence 303 BP; 82 A; 57 C; 54 G; 110 T; 0 other;
     tgttatatat taatagtcca ggcagaccgc ggattcagca gcagttaata tgcattcatt        60
     attgtactac atcagcaatt acgcaagcaa tgcttcgccg ccgccctgtc gccggaatcc       120
     gagagctgac gctgcagttg tcaccgattg catttacgta gtttcataat aagatcattc       180
     attccatatt catacttcga ataggttagg ttaattagat ttatgtaatt tttatattta       240
     attaaagtaa ttttatagta attttggttt tttttcgatc ctttggctgc cgctaacgta       300
     att                                                                     303
//
ID   M4DM        repbase;    DNA;    INV; 1435 BP.
XX
AC   X80025;
XX
DT   05-MAY-2000 (Rel. 5.04, Created)
DT   27-JUN-2012 (Rel. 17.06, Last updated, Version 2)
XX
DE   M4DM is a nonautonomous DNA transposon.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; TIR; DMTRDNA; M4DM.
XX
NM   M4DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1435
RA   Bernstein M., Lersch A.R., Subrahmanyan L. and Cline W.T.;
RT   "Transposon insertions causing constitutive Sex-lethal activity
RT   in Drosophila melanogaster affect Sxl sex-specific transcript
RT   splicing.";
RL   Genetics 139(2), 631-648 (1995).
XX
RN   [2]
RP   1-1435
RA   Bernstein M.;
RT   "M4DM.";
RL   Direct Submission to Genbank (30-JUN-1994)M. Bernstein, Yale
RL   University, Dept of Biology, 312 Kline Biology Tower, PO Box
RL   208103, New Haven, CT 06520-8103, USA.
XX
DR   GenBank; X80025; Positions       1    1435.
XX
CC   This element has been discovered [1] as an insertion into Sxl
CC   gene. The element is flanked by a 5bp target site duplication
CC   and it has 31bp TIRs. There are 30-50 copies of M4DM 98%
CC   identical to each other and flanked by 5bp target site
CC   duplications.
XX
SQ   Sequence 1435 BP; 456 A; 265 C; 212 G; 502 T; 0 other;
     cactatgggg catttggcct gtttttttta caaaaattaa tacctcctaa actattggag        60
     atatttggat gaattttttt ttatgcgtta cacatgcctc caggaatatt ttggaaaagt       120
     gggcgtgccc caactccgcc ccattttttt tttttttttt tttttttttt aataatatat       180
     ttttaaagtt tatttttaat ttcaataatg tataattcat aaccgtcttc ctcttcacaa       240
     tcagtagagt ctgaagaatt tttatcaggt tcaaattcgc aagctaacat ttcaatgact       300
     tctggtggaa gagatagtcg cttatgtttt cgcctcttta aatttattga tgatattatg       360
     ggatccgaag tatccattgc tctgtaaaag acatctgcga agctactaat agtttttgcc       420
     gtggctggct tcaacaaaag aattttaagt atggctgcaa gatcccgcag gcagcacttc       480
     cgtgcagctt gaaccaaaag acgttcgttg tgtttctgcg cccttacgag ttcatctgct       540
     tgctgtcttg ggccactcaa attttttaaa taatatgacg ttttcgggag tccaactaat       600
     ttcctttcct atttattttt ctcctttacc ttcaggacta ggtgttcttc taaccaattt       660
     gaaaaaaatt ttaaaaattc atatattttt cgattgcatt ttctccaatt tcgtaaaaga       720
     ttgactgaaa tcattcgtta ttattattat tagttaatcg tttattaaag tctagcttgc       780
     tatcagaaaa atgcccactg ataaaagtgc aaatagaatt ttccttttga cgaacaccct       840
     tttgcgtgcg ccacacttcc agcagggcag cattggaaat cgagatattg ctccctaaaa       900
     aatgaaattt ctcaaaaaac cgcaaaaaac gcacatagag actacctgat atgagttagg       960
     aattgaacac actacaacat ggatataaac acttactgaa caaatttgaa caaattgttg      1020
     tagctctatt caaagttgaa aattttttca aacaactaca tcttgacacc acttgttaaa      1080
     tgtacaaatt gttagaaata ggcgcacaca ataaacaata tattaataac aacacataat      1140
     aagaacctaa agattgatta tccatttcaa attatactct ccttcttctt ctttttaaat      1200
     tttaacactt tgaaagttaa gctaaatttt gtgcgcaaag cagccacgtg gtatatgctc      1260
     gcaacagccg actttaacag ctgttattat aacagtgcat tgttaaatta acttatgcgg      1320
     gctatatcat aacagtttaa cgtatttcca atgtattaat actaaaatac ttcaaatttg      1380
     catacttgtg aaaaacacat tattgtaaaa aaaacaggcc aaatgcccca tagtg           1435
//
ID   MAG         repbase;    DNA;    INV; 4564 BP.
XX
AC   X17219;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Bombyx mori retrotransposon MAG DNA.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; MAG;
KW   Retrotransposon MAG.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4564
RA   Garel A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (20-DEC-1989). Garel A.,
RL   Centre de Genetique Moleculaire et Cellulaire UMR106, Universite
RL   Lyon I, 43 Boulevard du 11 Novembre 1918, 69622 Villeurbanne
RL   Cedex, France.
XX
RN   [2]
RP   1-4564
RA   Michaille J.J., Mathavan S., Gaillard J. and Garel A.;
RT   "The complete sequence of mag, a new retrotransposon in Bombyx
RT   mori.";
RL   Nucleic Acids Res 18(3),  (1990).
XX
DR   GenBank; X17219; Positions       1    4564.
XX
SQ   Sequence 4564 BP; 1429 A; 867 C; 1067 G; 1201 T; 0 other;
     tgttatgttt gtaagtaagt attcacttca gtgtgtcaat aaacggtgaa cgcaacgtac        60
     gtgtctatta tttactagtg gcgaacgcgg aaaaaaaaaa tcaatttgtg gcttgtttgt       120
     ttcttgtttg gactaattaa aattatatga acataatgtc ggtgggacag ttgaaagaat       180
     tcgcggtaaa cagtggaaac tggtcctcat atgttgagag attggaaatg tacttttttc       240
     ctgaataaag tgactgacga tttaaattac ccacatttaa tttccattat gggtgaggaa       300
     agcgtacgat ttattatcga cattagccag cccttcgaag ccgtcacaat taacatatgc       360
     taatgctgta gcgatgttgg cagctcacct gcaaccgaag ccctcaatct tggcggaaag       420
     atacaagttt cgacaacgtc ggcagctgaa tgagtcaata gctgactacc tcacagaatt       480
     aaaaaaatta tcaaaaaatt gtgaattcgg ctcgtcgctg gatgaaaatc tgcgtgatca       540
     aatggtttgt ggattaaaga gcgaaatcat acggcaaagg ttatttgccg aggagaaatt       600
     agaatataag cgtgcagtta cgttagcttt gtcattagaa gctgcggaga gggatgcgat       660
     tgcagtggaa cgtacgccaa ttgaggaggt taacaaaatt aacttcaatg aatgttcaag       720
     atgtggagac aggagacacc aagcaaagga ttgcatatac aaagactacg tgtgcagttc       780
     atgtcatgaa accggccatc tacgaagaat gtgccccaaa aacgggctta agaaccaggc       840
     ggaggcagcc gggggttcag cacgcaccgg gcgccggggg aaccggggtg caggcggcaa       900
     caggcgatcg tggcgcgggc agcgagtgcg ggacgaggag gccgagagcg ggctcctttg       960
     cacttattat acgatcaaaa caacgatgac acatacaaca acttcaataa tgaacaggac      1020
     gggtgtggag aagaaaatga gcctatgtac caaatgacat tgagtaatta taaaccggtg      1080
     tgtattaaag ttaaagtcca aaattgcttg ctcaagatgg aggtcgatac tggatcggcg      1140
     ttatcttgta ttagcaagaa tgtttatgat aaatattttt ctaaggagaa gttacaggca      1200
     tgcttattaa atttaaaatt ttacgatggc tcaatcattc ggcctttagg gtttataaac      1260
     actatagtga agtaccaagg tgtttcaaaa atgttagact tgtatgtcat agacaaagga      1320
     acgactaatc tattgggccg acaatggtta gctgaattga atattaatat aaaaatatca      1380
     aaacctacga gttttaaaat acaacacagt aactttgtaa ccgaacacgc acgagactat      1440
     aataaattaa ttaatgaaat tgtttctaga cataaatcct tgttcgacgg cacattgggt      1500
     aaatatacgg ggggcacagc agagttaatc gtgcggccgg atgcggtgcc tatctactgc      1560
     cgcgcgcgac cggtgccgta tgcgctgcgc gagcgcgtcg atgccgagct cgacgcgatg      1620
     ctggccgccg gcgtcatcaa accggtggac cactccgact gggccacgcc acttgtcgta      1680
     gtacgcaaag cggacggcgg tctgagaata tgtgcggact ataaggtaac ccttaacaaa      1740
     gtattagcaa tcgacagatt tccggttcca aaaatggagg acttattcag taatctcagc      1800
     ggaaataaat tttttactaa gcttgattta tctcaagctt ataatcaaat agtcttatca      1860
     gaacgttcta gcgagtacac ggttatcaat acacatagag gattatttaa atattcccgc      1920
     ctcgtctacg ggttagcttc gagcccaggc atttttcaaa aactaatggt aaatatgttt      1980
     aaaaatgtcc caaatgtagt agttttctat gatgacatat tgattagaaa tcaggaccta      2040
     gacagtcatt taaagtctat aaaagaagta ttagatatat tagaaaggta tggcttaaaa      2100
     attaaaagga gtaagtgcga gttcatggta acagaagtga ggtatttagg gttcataata      2160
     gatcaaaatg gggttcgtgt agacccagag aaagtcaaat caatagcaac aatgccacac      2220
     ccaaataacg tgacagaatt aaaatctttc atcggtatgg taaacttcta ttcgaagttc      2280
     atacaagatt tgagtgcaca tttatcacct ttatatgccc ttttaaaaaa aggtaagcac      2340
     tggatgtggg gaaatgaaca aaatgctgct ttcctgaatg ttaaaaagtt tttgtgtagt      2400
     acaaaagcac tcgcacattt tgatatgtct ttggagtcgg tgttgactgt ggatgcgagc      2460
     gcgcgtggtc tgggtgccgt gttggcgcag cgcgggccag gatgtcagga gcgcgtcgtt      2520
     gcatacgctt cacgcgcact caccactcat gaattacact acagtcagat tcataaggaa      2580
     gcattggcga ttgttttcgc ggtggaaaaa ttccatcaat acttatatgg gagaaagttc      2640
     atactacgga ccgaccacaa acctctggtg agcattttcg ggcctaacat aggtatcccg      2700
     agcgcggcag ctagccgctt gcagcgctgg gctattaaac tatcagcata tgactttgaa      2760
     atcgagtacg ttaggacaga taaaaatgta gccgatgcac tttcacggtt aatcgagtct      2820
     caaaaaaatg acgtagcttc cgaggaaaca gacttacccg agcaaaccta cttacacttc      2880
     tcaacagaag ctctgttaat agattataat gttcttaaaa aacaaactag tagtgatcca      2940
     atcttaagtc gcgtattaag ttatttaagg gacggatggc ccttagacat agaaattaat      3000
     gaattaaaac catattataa taggaaaaac gaactttata ttgaattagg atgtataatg      3060
     tggggtcatc gtgtggttat accctcttca tgcagaaaca aaataataac ggagcttcat      3120
     gatccgcata tgggcatagt gaaaacaaaa tcgctagcac gtagttacgt ttggtggccg      3180
     ggaatcgacg aagcgctcga gacggaatgt cgcgcttgca ccgtgtgtgc tgccgtcgca      3240
     gacgcacctt ctacacacgc gccccgctcg tggccctggc cctcacgccc ctggtccagg      3300
     ttacacttag acttcttagg ccccataggt ggagtcactt acctagttgt agtggattca      3360
     tgctccaaat ggatagaggc aattaaaatg cagaggacaa cggcacaagc ggttatatcg      3420
     gtactgcggg acttgtggtc aaaattcggc ctgccaaagc aaacggtcag tgacaatgga      3480
     ccgcctttct cgagctctga ttttcagaag tttctgattc ataatggcat aaaacatatt      3540
     tattcagctc cctatcatcc cgcctctaat ggggccgctg aaaatgcagt taaaatttgt      3600
     aaacgtgcga ttaaaaaggc attaaaacag aatttaaacg tagatacagc tctgtgtaga      3660
     tttttattag cctacagaaa tacagaacat gcaactaccg gcgatagtcc agccaatata      3720
     ttacagggtc gaagtctccg tatgagatta gataatttaa aaccagaaag gcaatctcga      3780
     gttatcgcgc aacaagagcg gagcgagcaa aacgcagggg gtgtgcagcg acaactcgag      3840
     ccgggcacta aggtgtggta tcgggattat cgaggtctgg ataaatgggt acctgggacg      3900
     atcctcaagc aattaggtag tcgtgattac tgtgtacgat ctagttttgg aaccgagaat      3960
     cataggcacg tcgatcagct aaaattaagg gttacaaaaa atatagataa agttgatacc      4020
     tttgcgtcga ttcgtaaaaa tataagtccc gaactgatcg cgcaaaattt agacttaaga      4080
     acacaatcac gtaagttccg gctatcattt cccatgacaa gtggcgagga accagtggcg      4140
     gtggtcaacg attcggggaa gagtagttca ccaccaaaaa atagcacacc ggcacaggat      4200
     gctgtatcgc ctattcgtgg cagccctatg agacccgctg tgccgataga caagggagca      4260
     tgtaatactg gtggtaagag tatcaatgaa aatgtgacac ccaaacgtga acgtcctgta      4320
     agaatacgca agccaccagt tagatatgga ttcgaggaaa tagattaagt atatagttat      4380
     aacctctctt tgtttttttt tactttagtt tgttatgtac gcttagttaa gatatatata      4440
     tatatatatt aattgtgctt ataatgtgta gtaaataagg gtggaggtgt tatgtttgta      4500
     agtaagtatt cacttcagtg tgtcaataaa cggtgaacgc aacgtacgtg tctattattt      4560
     acta                                                                   4564
//
ID   MAR1_BM     repbase;    DNA;    INV; 1310 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Bombyx mori transposon Bmmar1 mariner-like element - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MAR1_BM;
KW   mariner-like transposon; transposase domain.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Kumaresan G. and Mathavan S.;
RT   "Molecular diversity of the mariner-like transposable elements in
RT   the silkworm, Bombyx mori.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Bombyx mori transposon Bmmar1 mariner-like element - a
RT   consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1310 BP; 420 A; 223 C; 276 G; 390 T; 1 other;
     cttagtctgg ccataaatac tgttacaatt aaaaataaac aaaatattac atttgaattt        60
     ggaatctgtc atttttatat gattgctcat tgagttttct cattttggcg ccaatacatt       120
     gtacaatatt ttgcgatatt aaaatggagt ggggtgataa agagaaccga atcgctgtga       180
     ttgcattaca caaagtaggt atggagccaa atgcaatttt taaaactctc catacgcttg       240
     gtattagtaa aatgtttgtg taccgggcta ttaataggtg caatgagacc tcctctgttt       300
     gtgacagaaa aagatctggc cgtccacgta gtgttcgtac gaaaaaggtg gtcaaagcag       360
     taagggaaag aattcgaaga aatcctgtcc gaaagcaaaa gattttatct cgggagatga       420
     agatagcacc tagaaccatg tcgcgtattt taaaagatga cttaggactt gcagcctata       480
     agagacgtac tggtcatttc ttaactgata atttaaaaga gaatagggtg gtaaaatcga       540
     aacaactact gaagcggtac gcaaagggag gtcatagaaa atttttgttt acggatgaga       600
     aattttttac aattgagcaa cattttaaca aacaaaatga ccgtatttat gctcaaagct       660
     ctaaggaagc ttccccaatt agtcgacaga gtgcaacgtg ggcactatcc gacttcagtg       720
     atggtttggt ggggtattag ctatgaagga gtgactgagc catacttttg tgaaaaaggt       780
     atcaaaacat cggcacaagt gtatcaagat accattcttg agaaggtagt gaagcccctt       840
     aacaacacca tgttcaataa tcaagaatgg tccttccagc aagactcggc gccaggtcat       900
     aaagctcggt ctacgcagtc ttggttggaa acgaacgttt cggacttcat cagagctgaa       960
     gactggccgt cgtctagtcc cgatcttaat ccgctggatt atgatttatg gtcagtttta      1020
     gagagtacgg cttgctctaa acgccatgat aatttggagt ccctaaaaca atccgtacga      1080
     ttggcagtga aaatttttcc catggaaaga gtgcgtgctt ctattgataa ctggcctcaa      1140
     cgtttaaagg actgtattgc agccaatgga gaccacttcg aataagcttt ttatacttta      1200
     aattgtttta tatttatgta ttaaactaac acactgtaaa agtaataaat gttatttgca      1260
     atagaatttt ttttatttty cattgtaaca gtatttatgg ccagactaag                 1310
//
ID   MARIAM1     repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   28-OCT-2005 (Rel. 10.10, Created)
DT   16-JUL-2012 (Rel. 17.07, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from Apis mellifera (a consensus).
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARIAM1.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   543-993
RA   Robertson H.M.;
RT   "The mariner transposable element is widespread in insects.";
RL   Nature 362(6417), 241-245 (1993).
XX
RN   [2]
RP   1-1284
RA   Jurka J.;
RT   "MARIAM1: Mariner-type transposon from honeybee (a consensus).";
RL   Direct Submission to Repbase Update (28-OCT-2005).
XX
DR   [2] (Consensus)
XX
CC   A fragment of this transposon was originally reported in ref. 1.
CC   Present in multiple copies >96% similar to consensus. The
CC   consensus sequence was derived from Genome Assembly Amel 3.0
CC   available from BCM-HGSC.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1207
FT                 /product="MARIAM1_1p"
FT                 /translation="MATDKVHLRHCILYEFQQGRNATEACRNLLKVFGEGT
FT                 VSDRTCRRWYEKFETGDFDLSDKPRSGRPSLIDDDVVKAMLEQDPFLTTSE
FT                 IAERLNSAQQTISDHIRKIGLVWKYSRWVPHELSQKNLDDRVVICTSLLAR
FT                 NKIEPFLNRMITGDEKWITYNNIVRKRAYCEPGKPSPSTSKPNLTLNKRML
FT                 CIWWDIRGPIHYELLKPNEKLNSEKYCQQLDNLKTAVQKKRPAMFNRKDII
FT                 LHHDNARPHAALGTRQKIAEVGWEILSHPPYSPDIAPSDYHLFLSLQNFLT
FT                 GKKFKNEEDVKQALVQFFASKDETFFKNGIYKLPSRWQEIINNNGNYIIQ"
XX
SQ   Sequence 1284 BP; 434 A; 233 C; 259 G; 358 T; 0 other;
     ttaggtctac cggaaagttc tgtccgaatc tatgacatca ttttcgccac gtaagcacat        60
     gtttatttat tgcatgttcg gctctatatt tttatcgctt aatgtataca tactgacgta       120
     gcaaataaac tataataaag ttgattcaca ttagtcttaa gtgtgaaacg atagtatacc       180
     catggcgact gataaagttc atttacgcca ctgtatttta tacgaatttc aacaaggaag       240
     aaatgctaca gaagcatgta gaaatttatt gaaagtgttt ggtgaaggta cagtttctga       300
     taggacatgc agaagatggt acgaaaaatt tgaaacaggt gatttcgacc tttctgataa       360
     gccacgttct gggcgaccat ctttgatcga cgacgatgtt gttaaggcaa tgttggagca       420
     agatcctttt ctgacaacat cggagatcgc agaaaggctt aattcagctc aacaaaccat       480
     ttctgaccat attcggaaga taggattggt gtggaagtat tcaagatggg tgccacatga       540
     attaagtcag aaaaatttgg atgatcgagt tgtcatatgc acatctctgc ttgctcggaa       600
     caaaatcgag ccctttttga accggatgat aactggggat gaaaagtgga ttacatacaa       660
     caacattgta aggaaaaggg catattgtga acccggaaaa cctagccctt ccacctctaa       720
     accaaatttg actctgaata agagaatgtt gtgtatatgg tgggacattc gaggaccaat       780
     acattatgag cttttaaaac cgaacgaaaa gctcaattcg gagaagtatt gtcagcaact       840
     ggataattta aagacagcgg tccaaaaaaa gaggccggca atgttcaata ggaaggacat       900
     catactgcac cacgataacg ccagaccaca cgctgcttta gggactcgtc aaaaaattgc       960
     agaagtaggc tgggaaattc tgtcgcaccc accatattcc ccggacatag caccctctga      1020
     ttatcacttg tttttatcct tacaaaattt tttgacgggc aaaaaattca aaaatgaaga      1080
     agatgtcaaa caagcactgg ttcaattttt cgcatcaaaa gatgaaacat ttttcaaaaa      1140
     tgggatatac aaattgccct cacgctggca agagatcatt aataataatg gcaattatat      1200
     tattcaataa agttaattgg cggtaagaaa aaatttgtat tttgttttat tccaaaaacg      1260
     gacagaactt tccggtagac ctaa                                             1284
//
ID   MARINA      repbase;    DNA;    INV; 1267 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Mariner-like transposable element from Endopterygota - a
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARINA;
KW   mariner-like element; putative transposase.
XX
OS   Holometabola
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera.
XX
RN   [1]
RA   Yoshiyama M., Tu Z., Kainoh Y., Honda H., Shono T. and Kimura K.;
RT   "Possible horizontal transfer of a transposable element from host
RT   to parasitoid.";
RL   Mol. Biol. Evol 18(10), 1952-1958 (2001).
XX
RN   [2]
RA   Yoshiyama M.;
RT   "Mariner-like elements from moths.";
RL   Unpublished.
XX
RN   [3]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Mariner-like transposable element from Endopterygota - a
RT   consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [3] (Consensus)
XX
CC   Average similarity to consensus sequence 88%.
XX
SQ   Sequence 1267 BP; 407 A; 231 C; 298 G; 331 T; 0 other;
     gataagtccc cggtctgaca catagatggc gtcgctagta ttaaatgcat attattttta        60
     tatagtacca accttcaaat gattcgtgtc aaaatttgac gtctgtaagt caattagttt       120
     gtgagataga gcgtcttttg tgaagcaact tttgttattg tgaaaaaaat ggaaaaaaag       180
     gaatttcgtg ttttgataaa atactgtttt ctgaagggaa aaaatacagt ggaagcaaaa       240
     acttggcttg ataatgagtt tccggactct gccccaggga aatcaacaat aattgattgg       300
     tatgcaaaat tcaagcgtgg tgaaatgagc acggaggacg gtgaacgcag tggacgcccg       360
     aaagaggtgg ttaccgacga aaacatcaaa aaaatccaca aaatgatttt gaatgaccgt       420
     aaaatgaagt tgatcgagat agcagaggcc ttaaagatat caaaggaacg tgttggtcat       480
     atcattcatc aatatttgga tatgcggaag ctctgtgcaa aatgggtgcc gcgcgagctc       540
     acatttgacc aaaaacaaca acgtgttgat gattctgagc ggtgtttgca gctgttaaat       600
     cgtaataaac ccgagttttt gcgtcgatat gtgacaatgg atgaaacatg gctccatcac       660
     tacactcctg agtccaatcg acagtcggct gagtggacag cgaccggtga accggctccg       720
     aagcgtggaa agactcaaaa gtccgctggc aaagtaatgg cctctgtttt ttgggatgcg       780
     catggaataa tttttatcga ttatcttgag aagggaaaaa ccatcaacag tgactattat       840
     atggcgttat tggagcgttt gaaggtcgaa atcgcggcaa aacggcccca tatgaagaag       900
     aaaaaagtgt tgttccacca agacaacgca ccgtgccaca agtcattgag aacgatggca       960
     aaaattcatg aattgggctt cgaattgctt ccccacccac cgtattctcc agatctggcc      1020
     cccagcgact ttttcttgtt ctcagacctc aaaaggatgc tcgcagggaa aaaatttggc      1080
     tgcaatgaag aggtgatcgc cgaaactgag gcctattttg aggcaaaacc gaaggagtac      1140
     taccaaaatg gtatcaaaaa attggaaggt cgttataatc gttgtatcgc tcttgaaggg      1200
     aactatgttg aataataaaa acgaattttg acaaaaaaat gtgtttttct ttgttagacc      1260
     ggggact                                                                1267
//
ID   Mariner-100_HSal repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-100_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 951-951 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1207
FT                 /product="Mariner-100_HSal_1p"
FT                 /translation="MSSFKPNKEHLRHVLLFLFNQKKNASESRRILVETYG
FT                 DNVLTQDACVRWFRRFKSGDFDLKDKERPGQPKKFQDAELQALLDEDDTQT
FT                 QQQMAERLNVGRRTICDRLHAMGKIQKAGKWVPHQLNDRQMEKRKTVCEVL
FT                 LSRHKRKTFLHRIVTGDEKWIYFENPKLRKSWVDPGQSSTSTARPNRFGKK
FT                 TMLCIWWDQKGVVYHELLKLGETVDTVRYRQQMINLNHALIEKRPEWATRH
FT                 GKVILQHDNAPSHTAKAVKDTISTLGWELLPHPPYSPDLAPSDYHLFSSMS
FT                 HALSMKHFNNYGDVEKWLDDWTTSKDVRFFWEGIHKLPERWEKCVTSDGAY
FT                 FE"
XX
SQ   Sequence 1286 BP; 405 A; 266 C; 286 G; 329 T; 0 other;
     ccaggtgtgg cggttaataa ttcttaattt ttttaagaga tggcgctgga aacaaggatt        60
     ggttcacagt ctaacctctt atgtcatttt gttgctatga cagtaccttt caaaacgcca       120
     ttgatgttta aacgatttcg ggttagcgtc atattttttt cgtgtggtaa acatgtcgag       180
     tttcaagcca aataaagagc atttgcggca cgtactgctt ttcttgttca atcaaaagaa       240
     aaacgcgagt gaaagccgtc gtatacttgt ggaaacttac ggtgacaatg tcctaacgca       300
     agacgcttgt gtgcgttggt ttagacgatt caaaagtggt gattttgact tgaaagacaa       360
     agaacgccca ggtcaaccga aaaaatttca agatgccgaa ttgcaagcat tgttggacga       420
     agacgatacg caaactcaac aacaaatggc agagaggtta aatgttggtc gccgaaccat       480
     ttgtgatcgt ctgcatgcca tgggaaagat ccagaaagca ggaaaatggg taccacatca       540
     gttgaacgac agacagatgg aaaagcgaaa aacggtgtgc gaagttttgc tttctcggca       600
     taaaagaaag acttttttgc atcggatcgt gactggagac gaaaaatgga tatatttcga       660
     gaacccaaaa ctcagaaaat catgggttga cccaggacaa tcatcaacat cgaccgcaag       720
     accgaatcgc tttggaaaga agacaatgct gtgcatttgg tgggatcaga agggtgtcgt       780
     gtaccatgag cttctgaaac taggtgaaac agttgatacc gttcgctacc gtcaacaaat       840
     gatcaatttg aaccatgcat tgatcgaaaa gcgaccagaa tgggctacaa gacacggaaa       900
     agtaattttg cagcacgaca acgccccatc acacacagcg aaagcggtca aagacaccat       960
     ttctacactt ggctgggaac tcttgcccca cccgccgtat tcaccagact tggccccttc      1020
     cgactaccac ttgttttcat cgatgtctca cgcactctcc atgaaacatt tcaacaatta      1080
     cggagatgtc gaaaaatggc ttgatgattg gaccacctca aaagatgtac ggtttttctg      1140
     ggagggcatc cacaaattgc cagagagatg ggaaaaatgt gtaactagcg atggcgcata      1200
     ctttgaataa accatttttt acctttctcc caatttaaac gtgttttttt aagaaaaaat      1260
     taagaattat taaccgccac acctgg                                           1286
//
ID   Mariner-101_HSal repbase;    DNA;    INV; 3612 BP.
XX
AC   .
XX
DT   10-DEC-2012 (Rel. 19.04, Created)
DT   10-DEC-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-101_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3612
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 952-952 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1855..2925
FT                 /product="Mariner-101_HSal_1p"
FT                 /translation="MALTERXRITLLMMRGYGDRERSFRKVRDLFNAEFRQ
FT                 RRRGISAATVQKTCNRFQNTGCVKDRQRSGRPKIATNEDISIEILQSFVED
FT                 PHTSTRKAAQAHDCSYKSVLRVLKNSTFHPYKINLVQELVAHDFNRRLEFC
FT                 DVMMQKIDDQPEFQNKIVFSDEATFMLDGSVNRHNSRYWSDSNPHWMRESK
FT                 SQYPQKLNVWAGIVGQHIIGPFFIDGNLTAQRYEAMLRDDIVPTLRNIFGP
FT                 DFDSVRFQQDGAPPHFGLQVRNILNNTFPERWIGRRGAIEWPPRSPDLSPL
FT                 DFFFWGYLKNRVYRIKPQNLNDLRLRIIDEVALITPEILQNVTTSFYNRLA
FT                 HCQTVEGRQFEHLL"
XX
SQ   Sequence 3612 BP; 1047 A; 776 C; 772 G; 1012 T; 5 other;
     tacagggtgg gacaaaagtt tggatacacc ctcataactt ttgaacgaat ctagatagaa        60
     agttgaaatt tggggaagtt gtacaggatc atgaaagcta ttttttgtgc aggatggcat       120
     ccacccccta cctccttggg gcacgagggc agagggtgac ttaaaaatct taaatggcat       180
     gaaaggtcaa ctgagagctc attttaaagg cgttttaaag acgaaaaaaa tgttttttga       240
     gaaagttcgc tacgactctc caatcgaaag ttatgatcat aaaacaaaaa tttgcgtttc       300
     cttgtttatt gcgttaccgt tctttgcgtt acccagggtc tacggcgagg acgtgacggt       360
     tatcagaccc cgtgtgtgtg tgtgtgtgta acggagatca ggactctagg gttcgtcact       420
     cccccagtat tttgtgactc caaaccctct ccgtttcacg cgcgcgtgtg tgcgtgtgtg       480
     tttgtgtgtg tgtgtgtgcg cgcgcgcgcg cgggtgtggg tgggtgaata tgtgtttacn       540
     gtaagtgttc gaactgtcga ccttctacag tttgacagtg ggccagacga ttgtaaaaac       600
     tggttgtaac gttttgtaat atttcgggag taattaatgc cacttcgtcg ataattcgta       660
     gtcgcaagtc gttgagattt tgaggtttaa ttctgtacac tcggtttttc aaataacccc       720
     agaagaaaaa gtccaaggga gacaggtcag gtgatctggg tggccactcg attgcgcccc       780
     ttcttcctat ccatctttca ggaaaagtgt tgtttaaaat attccgcact tgtaatccaa       840
     aatgtggagg agcaccgtcc tgctgaaacc gaactgaatc aaaatctgga ccgaaaatgt       900
     tgcgaagagt tggtacaata tcgtctcgga gcatggcctc atacctttgt gctgtcagat       960
     tgccatcaat gaaaaatggt cctattatgt gctgtccaac tattcccgcc caaacattta      1020
     gtttttgtgg atattggctt ttggattctc tcatccaatg cggattagaa tcactccaat      1080
     atcgactgtt gtgtctattt accgaaccgt ctaacataaa tgtagcctcg tctgagaaaa      1140
     caatcttgtt ttgaaattcc ggttgatcat caattttttg catcattacg tcacaaaatt      1200
     cgagtcggcg attaaaatca tgtgcgacta attcctgaac gagatttatt ttgtatgggt      1260
     gaaatgtgga atcttctaca aatgattgta atatttctat cgagatgtct tcatttgtag      1320
     cgatcttcgg cctacccgat ctttgccgat ccttgacgca tcccgtattt tgaaaacgat      1380
     tacatgtttt ctgtacagtg gctgcagaaa tcccagatta tcgacgatag tgtgcggtat      1440
     ttaccgagta tcacagcggg gaaatacttt tccgtcacaa gattcaaaac cgacgtacat      1500
     tacaatttat ttcacaactc ttgttcgtcg agatttgttt cagtgaacct tttaaagatt      1560
     taattgtgaa tagtcagaaa ataacacggc aacttatttt acatgatacg gccgcgttat      1620
     tttcttaaaa taccgtttta ttaaataaaa tactctcttc acaattaaat ctttaaaagg      1680
     ttgactgaaa caaatctcga cgaacaagag ttgtgaaata aattgtacga tcggttttga      1740
     atcttgtgac ggaaaagtat ttccccgctg tgatactcgg taaatactgc acactatcgt      1800
     cgataatctg acaatcaaac gagcgtctcg gataggctaa ctgagtgcnt ngaaatggcg      1860
     cttacagaaa gagnacgtat tactcttttg atgatgcgag ggtacggtga ccgcgaacgg      1920
     tcatttcgaa aggttcgaga tttatttaat gctgagtttc ggcaaaggag gcgagggatt      1980
     tctgcagcca ctgtacagaa aacatgtaat cgttttcaaa atacgggatg cgtcaaggat      2040
     cggcaaagat cgggtaggcc gaagatcgct acaaatgaag acatctcgat agaaatatta      2100
     caatcatttg tagaagatcc ccatacctct acacgaaaag ctgcccaggc tcatgactgt      2160
     agctataaat ctgttctgcg tgttctcaaa aattccacat ttcacccata caaaataaat      2220
     ctcgttcagg aattagtcgc acatgatttt aatcgccgac tcgaattttg tgacgtaatg      2280
     atgcaaaaaa ttgatgatca accggaattt caaaacaaga ttgttttctc agacgaggct      2340
     acatttatgt tagacggttc agtaaataga cacaacagtc gatattggag tgattctaat      2400
     ccgcattgga tgagagaatc caaaagccaa tatccacaaa aactaaatgt ttgggcggga      2460
     atagttggac agcacataat aggaccattt ttcattgacg gcaatctgac agcacaaagg      2520
     tatgaggcca tgctccgaga cgatattgta ccaactcttc gcaacatttt cggtccagat      2580
     tttgattcag ttcggtttca gcaggacggt gctcctccac attttggatt acaagtgcgg      2640
     aatattttaa acaacacttt tcctgaaaga tggataggaa gaaggggcgc aatcgagtgg      2700
     ccacccagat cacctgacct gtctcccttg gactttttct tctggggtta tttgaaaaac      2760
     cgagtgtaca gaattaaacc tcaaaatctc aacgacttgc gactacgaat tatcgacgaa      2820
     gtggcattaa ttactcccga aatattacaa aacgttacaa ccagttttta caatcgtctg      2880
     gcccactgtc aaactgtaga aggtcgacag ttcgaacact tactgtaaac acatattcac      2940
     ccacccacac ccgcgcgcgc gcgcgcacnc acacacacac acacacaaca cacgcgtgcg      3000
     tgaaacggag aaggtttaga gtcacaaaat agggggggaa tgacgaaccc tagagtcctg      3060
     atctccgtta cacacacaca cggggtctaa taaccgtcac ccacacccgc gcgcgcgcgc      3120
     acacacacac acgaacaaac aaacacacac acacgcgcgc gtgaaacggg gagggtttgg      3180
     agtcacaaaa taccgcggga gtgacgaacc ctagagtcct gatctccgtt acacacacac      3240
     acggggtctg ataaccgtca cgtcctcgcc gtagaccctg ggtaacgcaa agaacggtaa      3300
     cgcaaataaa caaggaaatg caaatttttg ttttatgatc ataactttcg attggagagt      3360
     cgtagcgaac tttctcaaaa aatttttttc gtctttaaaa cacctttaaa atgagctctc      3420
     agttgacctt ttcatgccat ttaagatttt taagtcacct ctgccctcgt gccccaagga      3480
     ggtagggggt ggatgccatc ctgcacaaaa aatagctttc atgatcctgt acaacttctc      3540
     caaatttcaa ctttctatct agattcgttc aaaagttatg agggtgtatc cagacttttg      3600
     tcccaccctg ta                                                          3612
//
ID   Mariner-102_HSal repbase;    DNA;    INV; 1119 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.04, Created)
DT   20-DEC-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-102_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1119
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 953-953 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. The 3' terminus is uncertain. The
CC   classification is based on the similarity with Mariner-N7_PBa.
XX
SQ   Sequence 1119 BP; 369 A; 186 C; 232 G; 331 T; 1 other;
     tctacaaggg gaggacgcat cgaccgggaa acggtttgga acgaaactta cggagttaat        60
     agtacttgac tactaataac tcatggtaat agcatacgac gcaatacctc ttcgttttcg       120
     agaaaaaacg gtctaaagaa aagagccaac aaagtgtacg agttagtaag aagggtattc       180
     aacgaagcgg cgtagcgcag cagcgaaggt aacggactac cgagctgacg gctgaggttc       240
     gatccctgct gtatggtttt tttttattct gtaagcataa aaatgaaaca gaaaacatta       300
     ataaataata aaactgcgtt tcttaaatat attagtgttt gttaaatata ttattaatga       360
     tttaaattgc aaaaagaccg taaatcttat ctataaaata tatagtgtat gagaaaattt       420
     ttatataata attgcaatgg aaataggaat aaaaatattg ttatgaaata tataggaatg       480
     ctattaaccc tttgcggtcg atgccgccac agtggcggca ttcgcaagtc gtcgtagaag       540
     tcggtgccgc caggctggca ttcatgatcg cctggcgtgc ggcacggcaa acgaggctag       600
     cgataatgaa agaaaactat cctcccgatg ctagattcaa atgtttagat caacttacag       660
     atatcmatgt ttatcgatct cttcgaaatc ggccgaccgc aaagggttaa actagtatga       720
     gataattttt cgtaatctta tatcgtatat ataaaatatt tgtttctgtt acaactctct       780
     atgttgtgtt gaagtcgtgt tgtgttgaag ttgtgttgtg tctttatctc ttctggcaat       840
     ccccctccaa aaacttcctt tgtgtcattc taaacgatcg ttaagaatga cgaaatgatt       900
     cgagcatcgg aacagtcgtc agtagagcaa gcagcagtgt gcgtttacta gtgatacaga       960
     gcaattcggt gatcatattt aaattacata tatcataaca atgtcagaga atccttcaac      1020
     aagcaaaata gttggtgtag aatcgctaga agaaagatct tttgaaaatg aagattttaa      1080
     aggtgaattc actaatgctc tcgtatatgc gaattctat                             1119
//
ID   Mariner-10N1_LMi repbase;    DNA;    INV; 683 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-10N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-683
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3250-3250 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 683 BP; 195 A; 142 C; 147 G; 198 T; 1 other;
     cagggtgtcc cactcaactg tttcacccca gatatctctg aaactacaag agatattgaa        60
     aaacgacttt cacggtcatg aacgtacggc aggggcttat gaaagtaggt actatgagac       120
     actctaaaac gtgaagaaat attattttca acacaaactt atgttttttt taatggatac       180
     cccatattat ttcttaagca atcgatagga tgaaaaatca caaaaagaat ggcgttggtt       240
     gcatcgcgat gcgtcaatta catccggaga aactgcgaag cgaagttgac gtttgaaaca       300
     catgaggcgc gstgctagcg cgtgtccgag gctcaagcga gactcacggt tgagtctcgg       360
     acacgcgcta gcagcgcgcc tcatgtattt caaacgtcaa cttcgcttcg cagtttctcc       420
     ggatgtaatt gacgcatcgc gatgcaaccg acgccattct ttttgtgatt tttcatccta       480
     tcgattgctt aagaaataat atggggtatc catttaaaaa cataagtttg tgttgaaaat       540
     aatatttctt cacgttttag agtgtctcat agtacctact ttcataagcc cctgccgtac       600
     gttcatgacc gtgaaagtgg tttttcaata tctcttgtag tttcagagat atctggggtg       660
     aaacagttga gtgggacacc ctg                                               683
//
ID   Mariner-10_ACe repbase;    DNA;    INV; 1250 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1250
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 520-520 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 88% identical to the consensus.
XX
SQ   Sequence 1250 BP; 407 A; 230 C; 274 G; 339 T; 0 other;
     gctttgaatt aattctcgct gttgaccggg agaggtcagt atttgtgcta tttcaacatg        60
     gccgaaagtg actgctgatg tatgaaagta ctgtcaatag gctttaataa tcagtatgta       120
     acatttgatc ggatgcaaag aacacaattt tttatcgcat taaaaatgtc gggtttcgta       180
     ccaaaaaaag agcatttgcg ggaagcatta cttttctgtt ttaatctcaa gaaatctgct       240
     gctgaaagtc atcgtttgct agaggcttat ggaagcatgc tctatctgaa acaacttgca       300
     gagattggtt tagaagattc aaaaacaacg attttgacgt gaatgacaaa gagcgccctg       360
     gtcagccgaa aaagtttgaa gatggagaat tggaggcatt acttcaagaa gattcatgtc       420
     agacgctcaa agagttgtcg gaaacattaa atgtcgatga gtcaaccgtt agcaaacgtt       480
     taaaagcaat gggaatgatc cagaagttag gaaactgggt cccacatgaa ttgagagaaa       540
     gagacattgc gaaacgttta gccatttgtg aattgctgct tcaaagacaa aaacggaagt       600
     cgtttttgca tcgaattgtg actggcgatg aaaaatggat tcgttacgac aatcctaagc       660
     gcaagaatca tcaacatcaa cgccaaaaca ggatattcat ggaaagaagg tcatgctgtg       720
     catttggtgg gatcaagtcg gtgtagtgta ctatgagctg ctgcaaccga gtcaaatcat       780
     caatgctgaa cgctaccgac gtcaattact caatttgaat cgagcactca aagaaaaacg       840
     cccgcaatac gccaaaagac atgacaaagt tattcttctt cataacgcta gatcacatgt       900
     tgcagaacca gtgaaggaaa tcttggaggc acttggatgg gatgtcttat cccatccgcc       960
     ctattcacca gacgttgctc cttcagatta ccatttgttt cggtcgatgc agcatggtct      1020
     ttctgagcag cacttcagtt atttcgaaga tatcaaaaaa tggctcgatg actggatcgc      1080
     ctcaaaagaa cctgaatttt tctaccgcgg aatccatttg ttacccgaaa agtgggaaaa      1140
     gattgtagct ttcgatggac aatattgtga ataaaatatc aggtatacct ttttgatgaa      1200
     ataaacatga gtttttgtag caaaaaacag cgagaattaa ttcaagcacc                 1250
//
ID   Mariner-10_AEc repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1281
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 553-553 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1203
FT                 /product="Mariner-10_AEc_1p"
FT                 /translation="MASDKQFIRHCIRYEFHQGKSAAKACESICSVLGVNV
FT                 VSKSTCEFWFRRFKEDDFDVSDRERSGAPQKVTNNELQALLDQNSCQTQNE
FT                 LAQQLGVTQQDISIRLRQMGKILKEGKWVPHALSEKNKNDRLEKCLNLYNK
FT                 QHRKSFLWKIVTGDEKWIFYDNPKKRKHYVDPGQPTTSTPKRNIHSSKVML
FT                 CIWWDMKGVLYYELLHPNETVNSDRYSQQLIRLNQEIERNRPFTGKGKRPV
FT                 KLLHDNARPHVGKPVKETLLALGWEVLPHPAYSPDIAPSDYHLFRSMQNAL
FT                 SGVHFRAFEEVRKWVDNFIASKDETFFASGIRKLPERWLKVIDNDGDYFDN
FT                 "
XX
SQ   Sequence 1281 BP; 432 A; 219 C; 260 G; 370 T; 0 other;
     tattaggtgt acaaataagt tttaaagcgt tttttgtgta acgtataatt taaacttaga        60
     attcaaatat tttcgcgctc ttttgatatg tagtggcgct taatgtgtac tattaaaaaa       120
     cataattgac ttcacaaaat tggaaactta acctcaaaat taaatggttt taaaatggcg       180
     agcgacaagc aatttattcg acactgcatt cgatacgaat ttcatcaagg aaaaagcgct       240
     gctaaagcat gtgaatcaat ttgttctgtt cttggagtca atgttgtatc caaaagtacg       300
     tgtgagtttt ggtttaggcg atttaaagag gatgattttg atgttagcga tagagaacgt       360
     agtggtgctc ctcagaaggt tacaaacaat gaattgcaag cattactcga tcaaaactca       420
     tgtcaaacac aaaacgaact tgcacagcaa cttggagtaa ctcaacaaga tatttcaatt       480
     cgtttacggc agatgggaaa gattctgaag gaaggaaagt gggtgccgca tgcattaagt       540
     gaaaaaaaca aaaatgatcg tcttgagaag tgtttgaatc tgtacaataa acagcataga       600
     aaatctttct tgtggaaaat cgtgactggt gatgaaaagt ggatttttta cgataatcct       660
     aaaaagagaa aacattatgt ggatccagga caacccacta catcaacgcc aaaacgcaac       720
     atccacagca gcaaagttat gctatgcatc tggtgggaca tgaagggtgt gctatattat       780
     gaactgctcc atccgaatga aacggttaac agtgatcgct acagtcaaca attgatccgt       840
     ttaaatcaag aaatcgaacg aaatcgtcca tttactggca aaggaaaacg tcctgtgaaa       900
     ttgcttcatg acaacgctag gcctcatgtt ggtaaacctg taaaggaaac gttgctagct       960
     cttggttggg aagttctgcc gcacccggcg tatagcccag acatagcccc ttctgattat      1020
     catttattcc ggtcaatgca aaacgccttg tccggtgtac actttcgagc atttgaagaa      1080
     gtgcgaaaat gggtggataa ttttatcgca tcgaaagacg aaaccttctt cgcttctgga      1140
     attcgcaagc tgcccgaaag atggctaaag gtcatagata atgatggaga ttattttgat      1200
     aattaagtgt gttttcgttt ctaaataaat aaatattaaa tttcattaaa aacgctttaa      1260
     aacttatttg tacacctaat a                                                1281
//
ID   Mariner-10_BM repbase;    DNA;    INV; 1978 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   28-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-10_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1978
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 945-945 (2010).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           420..1481
FT                 /product="Mariner-10_BM_1p"
FT                 /translation="MEEYSSQHIADIHFVYGLCNGNANRAVTEYARRFPTR
FT                 RTPNAARTFIRIHLRLAENGIRRRANERTRVLSPQDEQEILRLITQDPSLS
FT                 IRLVACRLNLTKWTVWRVLKREGLHPYHFRRVQEILEPDYTRREVFCSWIL
FT                 RKTRSNPNFLKRIMWTDEAXFTRSGYTNHRNEHLWLQENPHAIRPSSFQHQ
FT                 FSVNVWAGLINDVLVGPIILPETMNGPRFLNFLEXDFFDALLELPLAYRNR
FT                 MILQLDGAPAHFALLVRNHLNAQYSPWVGRGGTIAWPPRSPYLTPLDFXLW
FT                 GTMKQKVYVNVPNTREELIANIIRTGNELKEDRAMIQRSTQHVAIRATACL
FT                 QRRGGHFEQFL"
XX
SQ   Sequence 1978 BP; 626 A; 350 C; 361 G; 629 T; 12 other;
     taatggcagc cattttgttt ttttttactt cgcagctcag gcgcctgcac tgatttaatc        60
     attgctatcg atgtagacgt cttaggaaga cgaaagaggt gtcatttgaa agctaacaat       120
     gtagacaatc aatttatgat acattttatt caatatcttt ttcacaaaat aacaaaaaaa       180
     gtattaataa aataaaaatt ataatttttt attgcatttt tttagttttt agtttttttc       240
     atgaaaacta accctgtcaa gctatttttt ttattgtttt ctcataatac aggatatttt       300
     cattaaaata atctttacat caaagccatg cctaagtaag atagttcaaa agttgtcatg       360
     gtttaaatat gacacttaaa ttttgttttt ggactaactg ttgattgtcg tgcattanaa       420
     tggaggagta ctcaagccag cacatcgctg acatccattt tgtgtatgga ttgtgtaacg       480
     ggaatgcaaa tagagctgtt acagaatatg cacgcagatt tcccactagg cgaacaccga       540
     atgctgctcg cactttcatt agaattcatt tgcgacttgc cgaaaatgga ataagaagac       600
     gcgctaacga acgtactcgt gttttgtcgc cccaagatga gcaagaaata ttgcgactaa       660
     ttactcaaga ccctagcctg agcatcaggc tcgtagcctg tcggctaaat ttaactaaat       720
     ggacggtgtg gagagtttta aaaagagaag gactgcatcc ttaccatttt cgtagggtac       780
     aagaaatact ggaacctgac tatacaagaa gagaagtttt ttgttcgtgg attttaagaa       840
     aaacgcgatc taatccaaat tttttaaaaa gaattatgtg gaccgatgag gccnctttca       900
     caagatcagg gtatacgaac caccgcaatg aacatctgtg gcttcaagaa aatccacatg       960
     caatccgacc aagttctttt cagcaccaat tttcggtcaa tgtttgggca ggactgatta      1020
     acgatgtnct tgttggacca atcattttac cagaaacaat gaatggtcca aggttcctga      1080
     atttcctgga ancggacttt tttgatgctc tattggagtt accattggcc tacagaaaca      1140
     gaatgattct gcaactggat ggtgctcccg cacattttgc actacttgtg cgaaatcatt      1200
     taaacgcgca gtattcgccg tgggttgggc gcggtggaac aatcgcatgg ccgccacgct      1260
     cgccttattt aacgcccctc gatttttntc tntggggcac aatgaaacaa aaagtatacg      1320
     taaacgtgcc taatacaaga gaagagttaa tcgcaaacat cattcgaaca gggaatgaat      1380
     taaaagaaga cagggcgatg atccagcgct ctacgcaaca tgtcgcaata agagcaacag      1440
     catgtctgca gaggcgagga ggtcacttcg aacagtttct gtaacttttt tgccaaatta      1500
     aatgcaatcc tatcaataat tattttttta tttaatttct caggaaaaac atgctttcga      1560
     agtggctatg tttatactgt catagctcct aaactatcta gcttagagnt aagattttaa      1620
     tgtgcatttt tggcaaatat cctgtattat tcaaaataaa taaaaaacgg ataggttagc      1680
     acattgtttt tttttatagt taacaatctg aaataaaaaa caatanatga aaaaaatcaa      1740
     tattttcgta aatttntttt tnatctttta ctcaagtntt ttgtcttgtt taataataag      1800
     aatagctaac aaagaagcca aaaaaaatag atttaataat ctattttttt tcggcttctt      1860
     tgttagctaa catatgggac ctcttttgtg tttctaacac ctntacttgg gtaggtattg      1920
     ttaaattaac acatgcacct gtgcttcggc tacaaaagtt tttaaagggc tgccatta        1978
//
ID   Mariner-10_CFl repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-10_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 814-814 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-10_CFl_1p"
FT                 /translation="MSEEKEEIRYILKFYFKKGKNATQAAKKICDVYGHDA
FT                 VSIRVAQIWFKRFQSGNFNVKDTPRSGRPITEKVDEIMEIIEQDRHISSHE
FT                 IGKQLNIDHKTVLNHLQKAGYKKKLDVWVPHDLTVKNLMDRFSICESLLKR
FT                 NDIEPFLKRLIIGDEKWITYDNNVRKRSWTKRNEVPQTVAKPKLTPRKVML
FT                 SVWWNYKGIVHYELLPSGQTIDSNLYCQQLERLRQAIEKTRPELINRKGVV
FT                 FHHDNARPHVSIATRQKLRELGWEVLMHPPYSPDLAPSDYHLFRSLQNSLN
FT                 GTKLASREACENHLSQFFAQKSHKFYSDGIMVLPQRWQKVVEQNGTYLIS"
XX
SQ   Sequence 1287 BP; 454 A; 229 C; 254 G; 350 T; 0 other;
     ttgggttggg gaaaaagttt cttcgtattt tccggcagat ggaattagaa tcgcataacc        60
     ttgataatat taatcggatc tgtcaatact ttgtgtgcgt ttgaaaggtg acatatcata       120
     aagaaaaagt agcaaaaaag tagtgatatt tatctattca gttaaaagtt attgcatctt       180
     gaaaatgagt gaagagaaag aagaaattcg atacatttta aaattttatt ttaaaaaagg       240
     gaagaatgca actcaggcag ctaaaaaaat ttgtgatgtt tatggacatg atgctgtatc       300
     aatacgtgtt gcacaaatct ggttcaagcg ttttcaatct ggaaatttta acgtcaaaga       360
     tacacctcgc tctggtcgac cgatcactga aaaagtcgat gaaattatgg aaataattga       420
     acaagaccgg catattagca gtcacgaaat cggtaagcaa ctgaacatcg accacaaaac       480
     agttttaaac catttgcaga aagctggata caaaaaaaag ctcgatgttt gggtgccaca       540
     tgatttaaca gtcaaaaatt taatggatcg attttctatc tgcgaatcat tgttaaaacg       600
     aaacgacatc gaaccatttt tgaaacggct cataataggc gatgaaaaat ggatcacgta       660
     tgacaataat gtacgaaaaa gatcgtggac aaagcgaaat gaagttccgc aaactgtggc       720
     aaagccaaaa ttgacgccaa gaaaagtgat gctgagtgtg tggtggaatt acaaaggaat       780
     cgttcactac gagctgctgc cgtccggtca aacaattgat tctaaccttt actgtcaaca       840
     actggaaaga ttacgccagg caattgagaa aacgcgacca gaattgatca ataggaaagg       900
     cgtcgtcttt catcacgaca acgcgagacc tcatgtatct atagcgactc gtcaaaaatt       960
     aagagaactt ggctgggaag ttttgatgca cccaccttat agtcctgacc ttgcaccatc      1020
     agactaccat ttatttcgat ctctacagaa ctctcttaat ggtacgaagt tggcttcaag      1080
     agaggcctgt gaaaatcact tgtcacagtt tttcgcccag aaatcacaca agttctacag      1140
     tgacgggatt atggttttac ctcaaagatg gcaaaaggtg gtcgaacaaa acggcacata      1200
     tttaatttca taagcttcat ttcaaatatg aataaaattt gtttcatttt tgcaataaaa      1260
     tacgaagaaa ctttttcccc aacccaa                                          1287
//
ID   Mariner-10_DAn repbase;    DNA;    INV; 1604 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1604
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 266-266 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 27-bp TIRs. TA TSDs.
XX
SQ   Sequence 1604 BP; 561 A; 263 C; 312 G; 466 T; 2 other;
     cacacctggc caaaataata agtacacaga tatagtgttt atttgtttcg atataactcg        60
     atttttatgc aatgcacacc cgccattttt tttatattga taagttacaa tgttacacaa       120
     tttctaaaac aagaatgaaa tatgggaacc tcgtggattc aatactaagc ttaattttct       180
     gctgggtggg cgattttggt ctggtcaaaa taataagtac acctgtgtat ttgataaatt       240
     ttaaaggatt aaagctagat tcgagttaag atatgttggt ttttattatt tcctagcata       300
     tttaagtata tcccaggaaa aaaaaattct atagttgggc aaaaaaaaga gttgtacaac       360
     agaaaaaaga aaaattgctt taattctgca aaaggaagga taaaatcttc gggaaatcgc       420
     taaaagactt gggcagtcat tatgtttggt ccagaatgcc ctaaaattca acattcaatt       480
     cgaaactcga ggtcggaaga agaaatcctg tcaaacgacc gacacccgaa tcctaagttt       540
     ttactgctca tccattgctg ctcatattga ccatgaaata tcgtctagat cagttcgtcg       600
     aagacttact aatgctggct tacaaggaca catagccaga aaagttactc tccttcgagg       660
     gaataaatta aagatgagga aacagttagc ccaaaatcat ttggcatgat ctggaacaga       720
     gggttccaaa aagtggaata atgtcctatg gagcgacgaa acaaaaataa atctatttgg       780
     taacgactcc agaaagaatg tacgacttgt ttcgtcgacc caaaggcata gaattcgacg       840
     cccggtactc gaaatagacc gttaaacacg gaagcggaaa cattatgatt tgggactgtt       900
     tttcttggca tggagtcgtc ccgatttacg gattaccgat actatgaccc aatttggata       960
     taaaattata ttgtctgaca taatgctgag gaagacatgc ccttgagwtg ggtctttcta      1020
     caggacaacg acccaaaaca cacatcaaag ctggtcaagg cttagttcac cgaaaacaag      1080
     gtggacatta tgaagtggcc aagtcaaact gcagacttaa acccaataga taacctatgg      1140
     ggagagctta atcgtcggat tggcacaaac acatttcaaa atatagaaga attgcagcaa      1200
     agacaaggta cgagagttgt ttggagacgt gccgtaaatt aaatgcccag catgccgaaa      1260
     cggataacaa aagttataca aaatatgggg ggatatactg ggtattagca taagattact      1320
     ataaaaagaa aaaaattgag aaaatgtttt ttatttttaa gttagaggct ttgaagaatt      1380
     gctgtactta tttttttgac caaccctttt ttatgttttt taggtttaat cgaccataaa      1440
     ttctacaaat ttcgtgaawt attcttatgt taagtatttt tataatcaac attatgccag      1500
     aaaactaaaa gaaattagaa ttggttcgtt acggttatca aaaaagattt acgtgacata      1560
     gaagaaatct tatgagcgtg tacttattat tttggccagg tgtg                       1604
//
ID   Mariner-10_DBp repbase;    DNA;    INV; 1658 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1658
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 593-593 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..1384
FT                 /product="Mariner-10_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MGPRTSLEKREDVLRHFKNGLSRRKIAEMVALSDSTV
FT                 QSIIYRFVRENRTHDKGRKAPNKIFNETDERYIVRKIRENPKLSAPKVAAQ
FT                 VETELGKSCHPDTIRRVLHSQGFNGRIARKKPFISAKNQKARLKFAMDHMN
FT                 KDETFWQSVIFADESKFNIFGSDGASYVWRKPNTELHNKNLKATVKHGGGS
FT                 VMVWACMSSAGVGKLHFIESTMDKTQYLDVLKKNLVQSAEKLGIQEQFRFY
FT                 QDNDPKHKSGIVQTWLIWNCPHVMQPPAQSPDMNVIENLWAILDQNIRKRQ
FT                 IKNKKDLKNALEEEWEKITPDVTKKLVDSMPKRLKMVIDNKGGHTKY"
XX
SQ   Sequence 1658 BP; 543 A; 296 C; 330 G; 489 T; 0 other;
     gtgggtcgca gcttatttcg accagcccct tgaaaaaaat ttgaatcagt atatctggta        60
     aactatatga ggtattaaaa taattcaaat gcagattttt agttttactt ttcaacaaca       120
     aatatatgtt tctatttaat ttttaagatt ttttttacat ttattaataa tatttaaaga       180
     aaaataccgc tgaaaatacc gccgcagctt atttcaacca gtcaattttc agcactgcca       240
     tgatccgtta ttttccaaga aacttttttt tttgttacat cggcttacat ttgttattta       300
     ctaactagtt gtgttggatt tcatcaactt tgtgcctttt tttccgcaat atatcaatta       360
     aatcaaaatg ggaccccgaa cctctttaga gaagagagaa gatgtgctcc gtcacttcaa       420
     aaacggactt tctcgccgga aaattgcgga aatggttgct cttagtgact ctacagtaca       480
     gagtattatt taccgttttg ttcgcgagaa cagaacgcat gacaagggcc gaaaagcccc       540
     aaacaaaatt tttaatgaga cggacgagcg ttatattgtc cgaaaaatcc gggaaaaccc       600
     taaactttcg gctccaaaag tggctgccca agtggagaca gagctgggca agtcttgcca       660
     cccagacacc atccgacgag ttctgcacag ccaggggttt aatggtcgaa ttgcacgaaa       720
     gaagcctttc attagtgcaa aaaaccagaa ggcaagatta aaattcgcca tggaccatat       780
     gaacaaggac gaaacttttt ggcagtctgt aatattcgca gatgagtcca aatttaatat       840
     ttttggctct gatggagcat cttatgtctg gcgtaagcca aacacagagc tccataataa       900
     aaacctaaag gcgactgtta aacatggcgg tggcagcgtc atggtttggg cctgtatgtc       960
     gtcagcggga gtcgggaagc tgcattttat agagtcaaca atggacaaga cccagtacct      1020
     cgacgtcttg aagaaaaatt tggtccaaag tgcggagaaa ctgggaatcc aagagcaatt      1080
     ccggttctac caagacaatg acccgaaaca taagtcgggc attgtgcaga cttggctaat      1140
     atggaattgc ccccacgtta tgcaacctcc cgcccagtca ccggatatga acgtgattga      1200
     aaatctatgg gcaatattgg accaaaatat aaggaaacgc cagataaaaa acaaaaaaga      1260
     tctgaagaac gctttggagg aggagtggga aaaaataacc ccagatgtaa ccaaaaaatt      1320
     ggtagattcc atgccaaaac ggcttaaaat ggttatagat aataaggggg ggcatactaa      1380
     atattaattt tgttgatttt tttaatttaa gttaggttta aaacattttt gactagctgg      1440
     ttgaaataag ctgcgacgct atttttagtt gtatttttct ttaaatatta ttattaaatg      1500
     tataaaaaat cttagaaaat aaatagaaac atatatttgt tgttgaaaag taaaactaaa      1560
     aatctgcatt tgaattattt tgataccttt tttagttcac gagatattta gctttgagtt      1620
     tttttagggt gctggttgaa ataagctgcg acccactg                              1658
//
ID   Mariner-10_DEl repbase;    DNA;    INV; 1554 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   28-JUN-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_DEl.
XX
NM   Mariner-10_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1554
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 423-423 (2012).
XX
RN   [2]
RP   1-1554
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(277..909,913..1338)
FT                 /product="Mariner-10_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MAPRTSIEQRELVLKHFKSGKSQRVIAEMVSLSPSTV
FT                 QYIIQRXVRENRVEDKGRNTPNKIFTEHEXXRIVRKIKENPKLSAPKIVAQ
FT                 VEEDVGQKCSADAVRRVLHDHNFNGRVARKKPFISNKNIAARLKFTREHIL
FT                 CPISIWNDLLFAGESKFNLFGSDGRQYVWRRPNTELENKHLKATVKHSGGH
FT                 VMVWSLWQPLAWATSFFLTGSCQNVSRTFKKNLLQSAEKFGIRDRFRFYQD
FT                 NDPKHLAGIVKSWLVWNCPHVVITPAQSPDLNVFENLWEILDMAIRKRQIS
FT                 NKNDLKNALIEEWQKIPVETTKKLVASMENRLKAVQKQKGGHTKYSKFFKN
FT                 NKFIQMNCTK"
XX
SQ   Sequence 1554 BP; 511 A; 274 C; 312 G; 446 T; 11 other;
     cagtggctcg cagcttattt cgtgcagctg tattacaaaa ctttaagtcg gtattgcggc        60
     taaaccaata aagataaaac aaaaatgaaa acgcaatatt ttaamwagaa acagtagcat       120
     atttaataaa ctaaaagtca ttgcaattaa tttaattata ttgaaacaaa atttactttt       180
     wgcattggta ktkatattgt waatgtactt wtggcgtcaa atttwtattt tgtgagtttc       240
     cggacttaat ttaagcgata caggggaatc accgatatgg caccacgaac aagtattgag       300
     cagcgagaac tcgtccttaa acactttaaa agtggaaaaa gtcagcgtgt cattgctgaa       360
     atggtatccc tcagccccag taccgtacaa tacatcatcc aacggttngt tcgagaaaac       420
     agggttgaag ataaaggccg aaatactcca aataaaattt tcaccgaaca tgaagassgt       480
     cgtattgttc gcaaaattaa ggaaaaccca aagctatcgg ccccaaaaat cgttgctcag       540
     gtcgaggaag atgtgggcca aaagtgtagt gctgatgcag tgcgccgtgt gttgcatgat       600
     cacaacttta atggccgagt tgcacggaaa aagccattta tcagcaacaa aaatattgct       660
     gctcgcctta aatttacaag ggagcatata ctttgtccga tttcgatttg gaatgactta       720
     ttatttgcag gcgagtcaaa atttaacctt tttggttcag atggaagaca atatgtttgg       780
     cggcgaccta atacggagct cgaaaacaaa cacctaaaag ctacagtcaa gcatagtggg       840
     ggtcatgtta tggtttggtc cttatggcag cctctggcgt gggcaacctc gttttttttg       900
     acgggatcat gatgccagaa tgtatctcga acttttaaaa aaaatctgct tcaaagtgct       960
     gaaaaattcg gcatacgcga tcgttttcga ttctaccaag acaacgatcc gaagcattta      1020
     gcaggcattg tgaagtcctg gctcgtctgg aactgccctc atgtcgtcat aacaccagca      1080
     cagtctccag acttgaatgt cttcgaaaat ttatgggaaa tattggacat ggcaattcga      1140
     aaaagacaaa tttcgaataa aaacgatttg aagaatgctc taatagaaga atggcaaaaa      1200
     ataccagtag aaacgaccaa aaaattagtc gcgtcgatgg aaaatcgtct gaaagctgtc      1260
     cagaagcaga aaggagggca cacaaaatat tcgaaatttt ttaagaataa taagtttatc      1320
     caaatgaact gcacgaaata agctgcggca tgaaaaaagc ctgtacattt tgtgtttttg      1380
     tcatattttg ttcttatttt taagattaag gagatcgttt ttagtttttt aaatatgcta      1440
     ctgtttctag ttaaaatatt gcgtttacat ttttgtttta tctttattgg tttagccgca      1500
     ataccgattt aaagttttgt aatacagctg cacgaaataa gctgcgagcc actg            1554
//
ID   Mariner-10_DF repbase;    DNA;    INV; 1647 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-10_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1647
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 777-777 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 26-bp TIRs. The consensus
CC   is ~96% identical to that of Mariner-2_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..1348
FT                 /product="Mariner-10_DF_1p"
FT                 /note="transposase."
FT                 /translation="MGRKKHCTLEEKKIALNLQQEGKSLREIATSLGRSVC
FT                 FVQNALKSKDPTEKRGRKKKSSQTTDTRIVSLAKKDPFMSSKSIAAEIGNE
FT                 ISSRTVRSRLKSAGLTGHIARKVPLLREKNLQMRRQFAQNHLAWPGPEGSK
FT                 KWINVLWSDESKINLFGNDSRRYVRXPKGKEFDPRYTKKTVKHGGGCVMVW
FT                 GCFSWHGVGPIHRITXIMTRFGYXSILADVMLPYSEENMPLRWVFQQDNDP
FT                 KHTSKLVKAWFTENGANLMSWPSQSPDFNPIENLWEHLKRRIGTNTFRNAE
FT                 ELWTFVQKTWYDTPLVVYLSTCRKPIASMPKQIAKVVQNMGGYTGY"
XX
SQ   Sequence 1647 BP; 543 A; 285 C; 334 G; 479 T; 6 other;
     cactactggc caaaataata agtacatagg tataggtatc atttcttgag tcatagctcg        60
     aaagmtatcg aatgcagggc tgctagttga ttatattttg aaaggatata gagttgtaag       120
     acatttaaat caaaaatgaa aatggggaac cccatttatc ctgtgctaag cctaaatttg       180
     ttctggatag tcgtttttgg tctggtcaaa ataataagta cacatccatt attcacaaat       240
     ttgaaaggat taagtttaga attggactac ggtatgttga tttttaatga tttcttgcat       300
     tttaagtata ttcgggttac aaaaaattct ttagatgggc cgaaaaaagc attgtaccct       360
     ggaagaaaag aagattgcct tgaatcttca acaagaagga aaaagtctac gagaaattgc       420
     gacaagcctt ggacgctcag tgtgttttgt tcagaatgcc ttaaaatcga aagatcctac       480
     cgaaaaacga ggaaggaaga agaaatcttc ccaaacgacg gacacccgca tcgtcagtct       540
     ggcaaaaaag gatcccttta tgtcttccaa gtccattgcc gctgaaatcg gcaatgaaat       600
     atcatctcga acggttcgga gcagacttaa aagtgccggc ctaacaggac atatagctag       660
     aaaagttcct ttacttcggg aaaaaaattt acagatgagg cgccagtttg cacaaaatca       720
     tttggcatgg cctggaccag aaggttctaa aaaatggatc aatgtgttat ggagcgacga       780
     atcaaaaata aacctttttg gtaacgactc tagacgttat gtacgacscc caaaaggtaa       840
     agaattcgac ccccggtaca caaagaagac mgttaagcac ggaggcggat gcgtaatggt       900
     ttggggctgt ttttcttggc atggcgttgg tccgatacat cgcataactg wtattatgac       960
     ccgatttggg tatmaaagta tactcgctga cgttatgcta ccatattctg aggaaaacat      1020
     gcctttgaga tgggtctttc aacaagacaa cgacccaaaa cacacctcaa agctggtcaa      1080
     ggcttggttt accgaaaacg gagcaaatct tatgagttgg ccaagccagt ctccggactt      1140
     caatccgatt gagaacctat gggaacactt aaaacgtcgt atcggcacaa atacttttcg      1200
     aaatgccgaa gaattgtgga catttgtcca aaaaacctgg tatgacactc cacttgtcgt      1260
     ctacttgtct acttgtcgca agcctattgc tagtatgcca aaacaaatcg ccaaagttgt      1320
     acaaaatatg ggtggctata ctggatacta gttatagatt aaggaaatca agaaaatgtt      1380
     gaaaaattgt tgttaagttt tgagtttttg agtttgtaga attggtgtac ttattatttt      1440
     gaccaaccct tttttatgtt ttttagatat aatcaaccac aaactttata aatgaattga      1500
     aaaatgccta tgttaactat ttttataatc ttatatatat atawaagcta taagtaaaat      1560
     tgagtttttc tttatgatca ttaaaaaagt tttacgagaa gttaaagaaa ccgtacacgg      1620
     gtgtacttat tattttggcc agtagtg                                          1647
//
ID   Mariner-10_DK repbase;    DNA;    INV; 1654 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-10_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1654
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1203-1203 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 758-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           690..1334
FT                 /product="Mariner-10_DK_1p"
FT                 /note="transposase."
FT                 /translation="MLIHNTFYPMYWTHSVIRKACPNILWSDESKIVLFGG
FT                 RGSRSYVRRPPNSEYRPSFTCKTIKHGGTSIMVWACFSYYGVGPIHWIKGI
FT                 MDQHVYCDILLTVMLSYAEYEIPLLWVFQQDNDPKHTSKKAPKWFQDRSLH
FT                 LMDWPAQSPDLNPIENLWSDVKKYVSNAKPRINQELWATIQESWSSIPRER
FT                 CQNLVNSMPRRCAAVIAAKAFTTKY"
XX
SQ   Sequence 1654 BP; 530 A; 302 C; 302 G; 518 T; 2 other;
     cagttgcggc aaaaaaaata gcaccatgac atatattttt ctttattgat taattgtttt        60
     ataactattc atatatttaa cttgtttaag gcttttattt ttactttagg ctctaattta       120
     tcgaaataca ctgcaagtgt cgtcgataat aacatgaaat tgaaatattt acattaagaa       180
     tgtgaacgtt gaacatttta ggcggcaaca aaaatagcac tatttcaaaa ataacttaag       240
     aaaacgaaaa aaacgaaaaa aatacgggaa gttctggaat atttgtattc atttgtattc       300
     cttatcgata tagtgtatta atatttcgtt gtaaaagctt tggcagcaat gacagcagca       360
     caacgtctcg gcatagaatt gaccaagttt tgacaccttt cccgtggaat actgctccat       420
     gattcttgaa tggtggccca gagctcctga ttaatccttg gttttgcatt ggaaacatat       480
     ttttttacat cagaccaaag attctctatc gggtttaagt ctggagactg agcaggccaa       540
     tccattaggt gaagggatct gtcttgaaac cacttaggag ctttcttgct ggtatgttta       600
     gggtcgttat cctgttggaa gacccacaac aacggtattt cgtattctgc ataagacagc       660
     atcactgtta gcaaaatatc gcaatagaca tgttgatcca taataccttt tatccaatgt       720
     attggaccca ctccgtaata agaaaagcat gcccaaacat cctatggtcg gatgaaagca       780
     aaatcgtgct atttggagga agaggatctc gatcctatgt acggcgaccc cccaattcgg       840
     aataccgccc aagtttcacc tgcaagacca taaaacacgg tggaacgagt atcatggttt       900
     gggcatgctt ttcttattac ggagtgggtc caatacattg gataaaaggt attatggatc       960
     aacatgtcta ttgcgatatt ttgctaacag tgatgctgtc ttatgcagaa tacgaaatac      1020
     cgttgttgtg ggtcttccaa caggataacg accctaaaca taccagcaag aaagctccta      1080
     agtggtttca agacagatcc cttcacctaa tggattggcc tgctcagtct ccagacttaa      1140
     acccgataga gaatctttgg tctgatgtaa aaaaatatgt ttccaatgca aaaccaagga      1200
     ttaatcagga gctctgggcc accattcaag aatcatggag cagtattcca cgggaaaggt      1260
     gtcaaaactt ggtcaattct atgccgagac gttgtgctgc tgtcattgct gccaaagctt      1320
     ttacaacgaa atattaatac actatatcga taaggaatac aaatgaatac aaatattcca      1380
     gaacttcccg tatttttttc gtttttttcg ttttcttaag ttatttttga aatagtgcta      1440
     tttttgttgc cgcctaaaat gttcaacgtt cacattctta atgtaaatat ttcaatttca      1500
     tgttattatc gacgacactt gcagtgtatt tcgataaatt agagcctaaa gtaaaaataa      1560
     aagccttaaa caagttaaat atatgaatag ttataaaaca awtaatcaat aawgaaaaat      1620
     atatgtcatg gtgctatttt ttttgccgca gctg                                  1654
//
ID   Mariner-10_DRh repbase;    DNA;    INV; 1629 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1629
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1404-1404 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. 26-bp TIRs. The consensus
CC   is ~96% identical to that of Mariner-7_DF.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           330..1346
FT                 /product="Mariner-10_DRh_1p"
FT                 /note="transposase."
FT                 /translation="MAKNKNTNPAERKLIWEYYEKNTSILQICKTLHFSRG
FT                 KVRNAIAFYKKHGTWENIPREKPRKTTLNDDRRIAKISKADPFLTSTQIRG
FT                 QMVADYGVNVSAQTIRRRLNEFGLYGRIAQKKPLLSIKNVKKRLQFAREHI
FT                 QKGPNFWNMIVWSDESKFNVFGSDGKPYVRRPPNKQLDPKYTKKTVKHGGA
FT                 SIMVWGCFTASGVGPLVKIEGIMNGEMYRDILINNLSGEYADNLPLAWIFQ
FT                 QDNDPKHTSKIVKSWLNQEAINVLQWPPQSPDLNPIENLWGILKQVVGQKK
FT                 PANKKDLWRILQEEWKKITPQQCARLVDSMPKRCSSVLKQKGHPTQY"
XX
SQ   Sequence 1629 BP; 542 A; 306 C; 323 G; 454 T; 4 other;
     cagtggtgct catagactta agccaccgcc actaccataa actgttttct taataacttt        60
     tttgaacata attatttcgg cctgaaattt ttacattttg caacactgtt atttaagcag       120
     ctgatcacat aaaaaatgac aagtaggaat tcgggggttc ccaaaaaatt gactaaatgt       180
     caaaaaggag tgttgcgctc tgctcatata cttaagccac cttgagctaa aatcgtcaaa       240
     cttgtgtttt ttccgggaaa gttgtgctag ttattttcta aactaaaata ttgaatacta       300
     aatacgtttc ccaaaacaat ttgaccgcta tggctaaaaa taaaaataca aatccggccg       360
     aaagaaagct aatatgggaa tattacgaaa aaaacacaag tattctacaa atttgtaaga       420
     ctttacattt ttcgcgtggc aaagtcagaa atgccattgc attttataag aaacatggta       480
     cctgggaaaa tattccacgt gaaaagccca gaaaaaccac tttaaacgac gatagacgga       540
     tcgccaaaat cagtaaagcc gatccgttct tgacttcgac gcaaatcaga ggtcaaatgg       600
     tggcagatta tggcgtgaat gtgtcagctc agaccataag aagacggcta aatgaattcg       660
     ggttatatgg acgcattgcc caaaaaaaac cattgctgtc cattaaaaat gttaaaaagc       720
     gccttcaatt cgccagagag catattcaaa aaggtcccaa tttttggaac atgattgttt       780
     ggagcgacga atccaagttt aatgtctttg ggagtgatgg taaaccatat gtacgacgtc       840
     ctcccaacaa acaattggac cccaaataca cgaagaagac cgttaaacat ggtggcgctt       900
     cgattatggt ctggggctgt ttcaccgcat cgggcgtagg tcccctagtg aagatagaag       960
     gcattatgaa cggcgaaatg tacagggaca tccttattaa caatttatct ggagaatatg      1020
     ccgataattt gccacttgcc tggatatttc aacaggacaa cgacccgaag cacaccagca      1080
     agatagtcaa gtcgtggctt aaccaagagg caatcaatgt tttgcaatgg ccaccgcaga      1140
     gccccgactt gaaccctata gagaacttgt ggggaattct taaacaagtc gttggccaaa      1200
     aaaaaccagc aaataaaaag gatttgtggc gaattttgca agaagagtgg aagaaaatca      1260
     cccctcaaca gtgcgcacgt cttgtggatt caatgccaaa gcgttgctcc tctgttctta      1320
     agcagaaagg tcatcccact cagtattgaa gtaaatttat taaaagtata aggaatattg      1380
     ggcaaatttt aactttttca accatttttt ccaggtggct taagtatgtg agcaggacat      1440
     tttggagatg gtctcagatt ttttaagttt ttcgttgaat atatattttt ataacttggt      1500
     ttttcttcta ttagaacact gatatataga actaatgtga cacaaaaaat tggagctgtg      1560
     aaataaaaac tttawwwwcg tttaaattct tggttgaagt cttgtggctt aagtctatga      1620
     gcaccactg                                                              1629
//
ID   Mariner-10_DSuz repbase;    DNA;    INV; 1610 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   21-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1610
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 128-128 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. TA TSDs. 25-bp TIRs. The consensus
CC   is ~94% identical to those of Mariner-1_DBp and Mariner-25_DF.
XX
FH   Key           Location/Qualifiers
FT   CDS           354..1346
FT                 /product="Mariner-10_DSuz_1p"
FT                 /note="transposase."
FT                 /translation="MPRGIHLSEEDRGMIKGLAESGQTISYIAARLNRHRN
FT                 TISNFLKNPESYGKIKRSGRPTEIDERCKRQIRRLAVQDNKSCMEIKGQLN
FT                 LDVSKRRINQILNQNKMVTYGSRDAVPRLLKRHITARLQFAEQYKFWSEEF
FT                 KKVIFSDEKKFNLDGPDSCQKYWRDKRQPRQICHKRNHGGGSLMVWAGFGY
FT                 AGKSPLCFIPTRTNAEIYIELLETVLIEFAGDHYGDEWIFQQDNAPIHTAR
FT                 KTKDFLAARKIPLLQWPAISPDLNPIEDLWGILSNKVYKNGRQFDTVNDLK
FT                 KALIKEWDQINPTTLQNLATSMPNRINQIFIKKGKHINY"
XX
SQ   Sequence 1610 BP; 560 A; 263 C; 293 G; 494 T; 0 other;
     cctcagggaa ataagtatat gtgcactttt taattttatt ttattttctc taaagttaac        60
     ggtacagttt ttgtaagtac gcagttttgt attcttatct tttatgaaca tctcctaatt       120
     caatggtcct ctttgggcat cattcgttgt accgttttta ataacatgtg ctgaaacttg       180
     tgtttttaat aggaaataag tatatgtgca aattgagatt attttgttat tgatagcgag       240
     taagctaaga agtgtgatct aaaaatattt tttaatcagc ggaacgtaag taaaatatat       300
     tgtttatcct tgtagaataa aataattaat attaagtttg attttacggt agaatgccac       360
     gtggtataca tttgtcagag gaagatcgcg gcatgatcaa aggactggct gaatctggcc       420
     agaccatttc ttatattgct gccagattaa ataggcacag gaatacaata agtaacttcc       480
     ttaaaaatcc ggaaagttat ggaaaaataa agcgaagcgg caggcccact gaaatcgacg       540
     agcggtgcaa gagacaaatt cggcgtctag ctgttcaaga caacaagtct tgcatggaga       600
     taaaaggtca actgaatctt gacgtatcca aaagacgtat aaaccaaatt ttgaaccaga       660
     acaaaatggt tacatatggt tcacgcgacg ctgtaccaag gctattaaag cgtcacataa       720
     ccgctcgtct acaatttgct gagcaataca aattttggtc ggaggagttt aaaaaagtta       780
     tattttcgga cgaaaaaaaa tttaatttag acggtcctga ctcctgtcaa aagtattggc       840
     gagacaaaag gcaaccacga cagatctgcc ataaacgaaa tcacggtgga ggatcattaa       900
     tggtttgggc cggatttggg tatgctggga agtctccact ttgttttata ccgactagaa       960
     caaatgcaga aatttatata gagttactgg aaactgtgct catcgaattt gctggagacc      1020
     attatgggga tgagtggata ttccagcaag acaacgcgcc aatccacaca gctcgtaaaa      1080
     ctaaagactt cctggcagct agaaaaatac cgctattgca atggccagcg atcagcccag      1140
     acctaaaccc aatagaagat ctttggggaa tactttctaa taaagtttac aagaatggcc      1200
     gccagttcga cacagttaat gacctcaaaa aggctttgat caaggaatgg gatcaaataa      1260
     atccgacaac tctgcaaaac ttggcaactt caatgcccaa tcggattaat caaattttta      1320
     ttaagaaagg aaaacatata aattattaag aagtatattt aaaattgtta aaaaattgtt      1380
     caacccatat ttcgaatttt cttgcagtat gcacatatac ttatttcata tgaaaataaa      1440
     gttctttatt taatttaaag ttaatcttaa cgtttacgaa aaatatatgg ttattttttt      1500
     gttaatatgt actcaagcaa tataaaaaaa atttaatcaa aaacctaata taattatttt      1560
     atgatttttt ttaaaataat ttcaatgcac atatacttct ttccctgagg                 1610
//
ID   Mariner-10_FoCa repbase;    DNA;    INV; 1663 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1663
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2485-2485 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. TA TSDs. 27-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..1254
FT                 /product="Mariner-10_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MSPRRKTPRKETTIAIRDLVIQHYENGGKTQREIADL
FT                 VKKSRSTVRDIILRYKLTGSIENRKRGGRPPTFNASEKKMIVRKVTRNPKL
FT                 SSPMVSGEMENDVGKVSSRWTISRVLKSSGLKNFRARRKPYISKTNQKKRL
FT                 AFARQHVNSDSKFWESILWSDESKFNVFGSDGRARVWRKVGESLKLRNLNA
FT                 TVKHGGGSVMIWGCFSSAGTGTHEFINTTMNQFVYQEILKRNVKQLAAKLS
FT                 LGRRYTFQQDRDPKHTAKSTWEFFRTNKIKVLEWPPQSPDLNPIEHLCIGP
FT                 HRKRDPKTQNFEQS"
XX
SQ   Sequence 1663 BP; 565 A; 316 C; 340 G; 442 T; 0 other;
     cactggagag cagatgtgaa cgcccaaaac cacgagcaca atttagatca tagtttctca        60
     ataagtgcgg gggatttttg aaaggtggtt atctcatttt gaagacaaat taatacataa       120
     acattcacca cagaaaaatt ggtgtatgat tatttttcgc tctgaacgga cctgtgacgc       180
     caaattaaga aacgaggagc ggtgcaaaag tcatcgccaa aaacaattca agtaattgca       240
     gttttaaaat tacgaaagta agataacatt ttttttaact ttttattaca cctactattg       300
     acttatattt taaataattc caccccagat aatacaatgt ctccgagaag aaaaactcca       360
     agaaaagaaa caacaatcgc cattcgggat ctggtcattc agcactacga aaatgggggg       420
     aagacgcaac gagaaattgc tgatttggtc aaaaaatctc gctcaaccgt ccgtgacatc       480
     attttacgtt acaaattaac gggatctatc gagaatagaa aacgaggagg aagaccacca       540
     accttcaacg caagcgagaa gaaaatgatt gttcgaaaag tgaccagaaa tccaaaactg       600
     tcgtctccga tggtctccgg tgaaatggaa aatgatgttg gaaaagtatc tagtcgttgg       660
     acaatctcga gagttttgaa aagtagtggc ctaaaaaatt ttagagccag gaggaagccc       720
     tacatatcaa aaacgaacca gaagaaaaga ttggctttcg caagacagca tgtaaacagt       780
     gattcaaaat tttgggaatc aatcttgtgg tccgatgaga gtaaatttaa tgttttcggg       840
     tcggatggca gggctagggt atggagaaag gtcggagaat ctcttaaact gagaaatctc       900
     aacgctacag tgaagcatgg cggaggaagt gtcatgatat ggggctgttt cagttccgct       960
     gggaccggta cgcacgaatt catcaacact accatgaacc aatttgtgta ccaagaaata      1020
     ctgaagagaa acgtgaaaca attagcagcc aaacttagcc ttggaagacg ctacaccttt      1080
     cagcaggacc gcgatcctaa gcacacggcc aagtccactt gggaattctt tagaactaac      1140
     aaaattaaag ttcttgaatg gcctccacaa agcccggatc tcaatcctat tgagcatttg      1200
     tgcataggac cacatcgaaa gagagatccg aaaacacaaa atttcgagca aagctgagct      1260
     gaaagaaaaa atctccgcgg cgttcagtac cgtcgaccct gacgtcacta agacattggt      1320
     tgcgtccatg caacgtcgct gtcaggctgt tatattgtcg aatggaggtc caacaacata      1380
     ttaattgtca attctttcgg ttaaaattga aaactgttga aatattatat gttgttttca      1440
     ttttggcgat cacttatgca ccctctgttt tcactttttt tcaaaactac gaacttgtga      1500
     cgaaaactat acattttgat gtagactatt tgatacttat tcattgaata ttaaattgta      1560
     tacaaaatgc aaaaaaaaat tccggaaaat ttgttatctt taaaaagtta ttagcattta      1620
     aatggtgagc tttctcttgg gcgttcacat ctgctctcca gtg                        1663
//
ID   Mariner-10_HSal repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 850-850 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..1208
FT                 /product="Mariner-10_HSal_1p"
FT                 /translation="MDKLKIRVIFEYEFRRGTNAAQTTRNINEVFGEDVAN
FT                 ERTVRRWFEKFRSGDFNLENEPRGRPETKVDNDELKAVVEADTSQTTRELA
FT                 ARFNVTIPTILDHLKQIGKVKKLDRWVPHELNERQKRNRLEACLSLLSRRK
FT                 GEPFLHRIVTCDEKRILFDNRKRSAQWLDIDEVPKHSPKPNIHKRKLMVSV
FT                 WWSSAGIIHYSFMKPGQSITADVYCNQLDEMMRMLAIKQPRLVNRDRPILL
FT                 QDNARPHVAQTTLLKLQXLDLETLCHPPYSPDLAPTDYHFFQALDHFLQGK
FT                 IFNSQQAVENAFRDFIVTRSSGFFAAGMNKLPLRWQNCVDSLGAYFD"
XX
SQ   Sequence 1290 BP; 377 A; 266 C; 274 G; 371 T; 2 other;
     tattaggtcg ttaaatatga aatgtccgat ttccttaagt actaagttcg acagtcgata        60
     tctctgacat ttcaccttta cagttcttgg tttttttttg ttgtgaaggt acatcatcac       120
     tctttcaaac gcatgttttg gtttgtgatt atctttcgaa ttgtctttgt tacagcaatt       180
     tttgtgtaac catggataag ttaaaaattc gtgttatttt cgaatatgag ttccgtcgtg       240
     gaaccaatgc agcgcagaca actcgaaata tcaacgaagt gtttggtgaa gatgtggcta       300
     atgaacgcac agtacgtcga tggtttgaga agtttcgttc tggcgatttt aatcttgaaa       360
     atgagccacg tgggcgaccc gagaccaagg tggataatga tgagctgaaa gctgtagtgg       420
     aagcggatac atctcaaact acgcgtgaat tagcagcaag gtttaacgtt actattccaa       480
     cgatattgga tcacttgaaa caaatcggca aggtaaagaa gctggataga tgggttccgc       540
     atgaattaaa cgagcgtcag aagagaaatc gtctcgaagc ttgcctttct ttactatcac       600
     gacgtaaagg cgaaccattt ttacatcgta ttgttacgtg tgatgaaaaa cggattcttt       660
     tcgacaatcg caagcgttcg gcacaatggt tggatataga tgaagtgccg aaacacagtc       720
     cgaaaccgaa tattcacaaa agaaagctaa tggtgtctgt ttggtggtcc agcgctggta       780
     ttatccacta cagcttcatg aaacctggtc aatcgattac agcggatgtc tactgtaacc       840
     aactggacga aatgatgagg atgcttgcga ttaagcagcc gagattggtc aatagagaca       900
     ggccaatcct cttgcaagac aacgctcgac cacatgtcgc acaaacaacg ttgctcaaac       960
     tacagnagct ggacttggaa actctctgtc acccaccgta ttcaccagac cttgcaccaa      1020
     ctgactacca cttcttccag gcactggacc acttcttgca aggaaaaata ttcaattctc      1080
     aacaagctgt ggaaaacgcc ttccgcgatt tcatcgtcac ccgctcttca ggcttcttcg      1140
     ctgctggcat gaataagcta ccgttaagat ggcagaactg tgtcgatagt ttaggcgcat      1200
     actttgatta attntactat ttctagtttg agatataata aaccaaactt ttgattcgaa      1260
     atcggacatt tcatacttaa cgacctaata                                       1290
//
ID   Mariner-10_LHu repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 368-368 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1206
FT                 /product="Mariner-10_LHu_1p"
FT                 /translation="MSTFVPNKVFLRGILLHCFIQKKSAAEAHRILVETYG
FT                 DNALSNTTCRDWFRRFKNNDFDLEDKERSGAPTKFEDEELEALLDLDPCQT
FT                 LVELGKTLQVDASTVSKRLKALGMIQKQGHWVPYELKPRDVERRFLMCELL
FT                 LQRHKRKGFLHRIITGDEKWIHYDNPKRRKSWGKPGHASTSSAKPNIHGSK
FT                 LLLCIWWDQQGVIYYELLKPNETITGARYRLQMMRLSRALKEKRPLYGQRH
FT                 DKVILLHDNARPHVAKPVKTYLETLQWEVLPHPPYSPDIAPSDYHLFRSMA
FT                 HGLSEQRFHSFEETEKWVDSWIASKDESFFRRGIQLLPERWEKVVSNDGQY
FT                 FE"
XX
SQ   Sequence 1287 BP; 394 A; 249 C; 294 G; 350 T; 0 other;
     ttaggtcctt gaataagttc tcgctgtttc ttaaaagatg gcgtagcggc actctgtgca        60
     tggaatttcg tacggaaacg catcagctaa gtagtactat atgtaacctc aaattctagt       120
     agatacagtt taccacagtg tcaaccacgt gtttaattac ctattgcgaa aatgtctact       180
     tttgtgccaa ataaagtgtt tttgcgggga attttattgc actgctttat tcaaaagaaa       240
     tctgcagctg aagcacacag aattcttgtt gaaacatatg gtgacaatgc tctgtcgaat       300
     acgacatgca gagactggtt taggcgcttt aaaaataatg actttgacct tgaagataaa       360
     gaacgttctg gagcaccgac aaagtttgaa gacgaagaat tggaggcatt gcttgatcta       420
     gatccatgtc agacgctagt agagctcggg aaaacattgc aagtagatgc gtcaacagtt       480
     tcaaaacgtt taaaagcgtt aggaatgatc caaaagcaag gacattgggt gccgtatgag       540
     ttgaagccga gagacgttga acgacgtttt ctcatgtgtg aattgctgct tcaacggcat       600
     aaaagaaaag gttttctgca ccgtatcatc actggagatg aaaagtggat acactacgat       660
     aatcctaagc gtagaaaatc gtggggtaag cccggccatg catcaacatc gtcggcaaag       720
     ccgaatatcc atggttcgaa acttctgctc tgcatttggt gggatcagca gggcgtaatt       780
     tattatgagc tgcttaaacc taatgaaact atcacgggag ctcgctatcg acttcagatg       840
     atgcgtttga gtcgagctct aaaagaaaag cggccactat acgggcagag acacgacaaa       900
     gtcattttgt tacatgacaa tgctcggcca catgtggcaa aaccagtcaa aacttacctg       960
     gaaacgcttc aatgggaagt tctacctcac ccgccgtatt caccggacat agccccctcg      1020
     gattaccact tgtttcggtc gatggcgcat ggtttgagcg agcagcgctt ccattctttc      1080
     gaagaaaccg aaaaatgggt cgattcatgg attgcgtcaa aagatgaatc gttttttcga      1140
     cgggggattc aattactgcc agaaagatgg gagaaagtgg tctctaatga tggacaatac      1200
     tttgagtaaa gttattgtaa gccttatatt ttaaattaat gttttttttt aacaaaaaaa      1260
     acagcgagaa cttattcaag gtcctaa                                          1287
//
ID   Mariner-10_LMi repbase;    DNA;    INV; 2999 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2999
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3251-3251 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           989..2062
FT                 /product="Mariner-10_LMi_1p"
FT                 /translation="MIITLICLFSTLLYIPVLYPVVGGRNSVQAERLYRRR
FT                 FPDKPSPSRRMFGRLTSRLRETGSLNPRPRHRPRTRTDERAEVAVLATVAV
FT                 NPHISTRQIEREVGVSKSSAQRILQRHKFHPYHVHLHQDLHGNDFSNRVTF
FT                 CRWAQQKLLTNPNFFADVLFTDEASFSNKGIVNMRNMHYWSADNPKWLRQV
FT                 EHQRPWKVNVWCGIIGDTIIGPFFVNGVQNGRQYSRFIRHNLPVLLDTVPL
FT                 NRRMVMWYQHDGCPAHNDLRARRLLNRKFPGRWIGRGGPVRWPARSPDLTP
FT                 LDFFLWGAVKDAVYQHEPTTPEDMKQRIIDACTAIKEETVARSRASFIRRV
FT                 TLCMQANGYHFEHDM"
XX
SQ   Sequence 2999 BP; 844 A; 661 C; 628 G; 866 T; 0 other;
     cagggtgtcc cagctatctt gtccacccaa aatatctctg gaacaataac agctattgga        60
     aaacgacttt caccggtatc aatgtacggc tggggcccat gaatgtacat atttggaaac       120
     attctaaaac gaaagcaaat gtgttttttt aacacaaact tatgtttttt ttttaaatgg       180
     acaccctata ttttttcttc agcaatccat agcatgacaa atcacataaa caatggcgtt       240
     gattgcatcg caatattcca attacatccc gagatattgc gacgagaagt tgacgcttga       300
     aaaacccgaa atacgctgct agcgcacgtc ctgaggctca ggcgtgaacc ccatgctgcc       360
     cgtaatcgcg atgtgattga catgcgtaat cgcacttcca tacttatcaa gaggtccgaa       420
     acgaataata cggtctgctg ccatcaactc tcataagcac ataatggttt ccctcttgca       480
     cgttttatgt gtctacgtac acaatatgaa ccagtaccga tcggtataca ccagtcaggt       540
     tgtcttattt atcctgcaca cccaaaataa ggtttatcga atgcgttaaa tgacccattg       600
     tgcctttcgc gcactcgttc atccagggcc tagctctacc tagacacgtg tccaacgtag       660
     ttcccactac agccacagtt accacttcgc cttgtttgtg atttgcgacc catgcaaact       720
     cctgtactcc accaccctcc gagcatccca tttgttgttg ctttggcgtg cagtacaccg       780
     cttgccagtg tagtcgtgca tcagagtaat ctagtgacgg cacggaggta gtacacattg       840
     tgaataaacg ttgtgttgtg gaacttatac tgtattatgt acacacatga agatatggta       900
     gaaatgctgc tgatctatgg agaatgtacg ttgacgggaa atacgttatt agattgcttg       960
     tttgtttata gtactgttag agaacattat gattattacg ttaatatgtc tgttttctac      1020
     cctactctac atacctgtac tgtaccctgt tgtaggcggg cgaaattctg ttcaggcaga      1080
     acgactgtac agaagacgat tccctgacaa gccatcgcct tcgcgccgga tgtttggtcg      1140
     tctcacatct cgtctacgtg aaacgggaag cttaaatcca agacctagac atcgtcctag      1200
     aacacgcaca gatgaacgtg ctgaagttgc tgtgctcgct accgtagctg tgaatcctca      1260
     catcagcaca cgtcaaattg aacgtgaagt tggtgtgtcg aaatcaagtg cacagcgtat      1320
     tcttcaacgt cataaatttc atccttacca tgttcattta caccaggatc ttcatggaaa      1380
     tgacttcagc aacagggtaa cattttgtcg gtgggctcag caaaaacttc tgactaatcc      1440
     aaattttttc gcagatgttc tctttaccga cgaggcatca ttctccaaca aaggaattgt      1500
     caatatgagg aatatgcatt attggtccgc agacaatcca aaatggctcc gtcaggtaga      1560
     gcatcaacgt ccgtggaaag tgaatgtttg gtgtgggatt attggagata ccattatcgg      1620
     acctttcttt gtaaatggcg tccaaaatgg cagacagtac tccagattta tacgacacaa      1680
     tcttcctgtt ctcttggaca ccgtacctct gaacaggaga atggtcatgt ggtatcagca      1740
     tgacggatgc cctgcacata acgacttaag agcacgacga cttctgaacc gtaagttccc      1800
     tggtaggtgg attggacgtg gtggcccagt taggtggcct gcccgatctc cggaccttac      1860
     accgctggat ttttttcttt ggggagcagt gaaggatgct gtttaccaac atgaaccaac      1920
     aacaccagag gacatgaagc aacgcattat tgatgcttgt acagccatca aagaggaaac      1980
     agtagcacga agtagggcat ccttcatccg cagagtgacc ctatgtatgc aagccaatgg      2040
     ttatcacttt gagcatgata tgtgaacgct atctttagta tgtagtgctg gtatcacagt      2100
     gcaagtttct acaaagggcc attttaccca gtgatgttca gaaacatttg tttgaaacaa      2160
     tttgtcatgt aacgcattag ataaacataa cattgataat tatgtgataa taaaactaat      2220
     tggttaaaca tgtttacatt catcttctat gtcttacctg aacttcccaa atcaaaacat      2280
     ttttacctaa acaacggtaa aacctttagt ccacttgctc gtttcactaa aaccatcaac      2340
     atgaatttta ctattatgag tgaatgattc actgtcactt gcgctagatc tacagtaaag      2400
     taaagtttta acgttgaacg gcattacctt tttagtaacg gattaacgat aagcgaagtt      2460
     aactttgtga ctaacgttgc ggtacacaga tatgttacag aaccgcatca cccctagcct      2520
     atgggataaa tacctgctgg aatgtacgac tttaatgcag gatggcagca gaccgtatta      2580
     ttcgtttcgg acctcttggt aagtatggaa gtgcgattac gcatgtcaat cacatcgcga      2640
     ttacgggcag catggggttc acgcctgagc ctcaggacgt gcgctagcag cgcatttcgg      2700
     gtttttcaag cgtcaacttc gcgtcgcaat atctcgggat gtaattggaa tattgcgatg      2760
     caatcaacgc cattgtttat gtgatttgtc atgctatgga ttgctgaaga aaaaatatag      2820
     ggtgtccatt aaaaaaacta agtttgtgtt aaaaaacaca tttgctttcg ttttagaatg      2880
     tttccaaata tgtacattca tgggccccag ccgtacattg ataccggtga aagtcgtttt      2940
     ccaatagctg ttattgttcc agagatattt tgggtggaca agatagctgg gacaccctg       2999
//
ID   Mariner-10_PBa repbase;    DNA;    INV; 1908 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1908
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 623-623 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           508..1395
FT                 /product="Mariner-10_PBa_1p"
FT                 /translation="MAAYSSNEIVDIILVLGEAGRNYCRAERLYRNRYPFR
FT                 RHPNAMQIRRILLRERRRIRKRNRKQINAEDDVNDPRVLAVLAMINLNPHI
FT                 STRELQRNLGIPYVTVWRILQRHKFHPYHITLTQDVSENDMRLRRQFCRWA
FT                 LRMIREDPTFFQYVLFSDEASFHNNGQLNRHNCHYWSTYNPHWTQRVDNQH
FT                 RWSLNTWCGIVNGYLIGPYFFDNRLNGETYLSFLQNKLPELLEEVDLATRQ
FT                 KMWWQQDGAPPHSHRIVTEYLNNIFHERWIGRYGYIRWPPRSPDLTSCDFF
FT                 CGAT"
XX
SQ   Sequence 1908 BP; 583 A; 358 C; 371 G; 596 T; 0 other;
     cagggtgttt cattttaagt gatatggtcg attatctcgc gaatcgatga ttttattgaa        60
     aaatttttcg aacgaaagtt gcatggcttg aagggggaca catgatggaa atgtggactt       120
     gaccttgagt gaccttgtca aaatcaggtc aaggtcatta atgttttttt aaatggaaac       180
     ccctattttt tattacatat tcttgtagct tatctcgaga gctttccaaa acactataat       240
     aaagttacgt ttcattgagt actttccgag ttatggagct tgaaagttac agtaccgccg       300
     gcgttatcca tgtacgcatg cgcgtgtgag cgggattctt acgcgcgcgc gtctccgcga       360
     tctatccaca ctgcttgaca tacgctcacg cgcacggaat tgagtccaat ccttcccaat       420
     tgaacgattc aactttcctc tttttttcgt atagcttttt ctttcaattt ttttacatta       480
     gtgggctttt tcaaagcttt tttcaaaatg gccgcttaca gttcaaatga aatcgttgat       540
     attattcttg tgcttggtga agctggacga aattattgta gagcagaaag attgtatcgt       600
     aatagatatc cgtttagacg acatccaaat gcaatgcaga taagaagaat tttattacga       660
     gagcgtagaa gaatccgtaa gagaaaccgc aagcaaataa atgctgaaga tgacgttaat       720
     gatccgcgtg tattagcagt gctagcaatg ataaacttga atcctcatat ttcgactaga       780
     gaactgcaac gtaatttagg aattccttat gtcactgtgt ggaggatttt acaaagacat       840
     aaattccatc cctaccatat cactttaacc caagatgtaa gtgaaaatga tatgaggcta       900
     agaagacaat tttgtcgttg ggcattacga atgataagag aagatccaac ttttttccag       960
     tatgttctct tcagtgacga agcctcattt cataacaatg gacaactcaa caggcataac      1020
     tgtcattatt ggtccacata caatcctcac tggactcaac gtgttgataa tcaacatcgt      1080
     tggagtttaa acacttggtg cggaattgta aatggatatt tgattggtcc atactttttt      1140
     gataaccgct taaatgggga aacttacctt tctttcttgc agaataaatt gcctgagctt      1200
     ttagaagagg ttgatcttgc tactcgacaa aaaatgtggt ggcagcaaga tggtgcgcca      1260
     ccccattctc atcgtattgt gacggaatac ctcaataaca tctttcatga aagatggata      1320
     gggaggtatg gatatattcg atggcctcca cggtctcctg atttaacttc gtgtgatttt      1380
     ttttgtgggg ctacataaaa aatattgttt acaaaactcc gccgacatct gcaggagaca      1440
     tgaaaaatcg aataactaat gtttgtcgta gcattcctca aaatatttta atttcaacag      1500
     tagaaaattt taagaaacgg ttgaggctat gtctgcaaga aaatggagct ccatttgaac      1560
     atcttatcaa cggctaaaga catattcgaa ttgatcttgc cttagttggc cggatcagtg      1620
     atcggtcttg ccttataact cggcaagtac tcaacgaaaa gtaactttat tatagtgttt      1680
     tggaaagctc tcgagataag ctacaagaat atgtaataaa aaataggggt ttccatttaa      1740
     aaaaacatta atgaccttga cctgattttg acaaggtcac tcaaggtcaa gtccacattt      1800
     ccatcatgtg tcccccttca agccatgcaa ctttcgttcg aaaaattttt caataaaatc      1860
     atcgattcgc gagataatcg accatatcac ttaaaatgaa acaccctg                   1908
//
ID   Mariner-10_RPr repbase;    DNA;    INV; 1538 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1538
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3256-3256 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1286
FT                 /product="Mariner-10_RPr_1p"
FT                 /translation="MERRPLSDERADLIVQFHLQGLSQLEIANALNIAPSV
FT                 VCRALQRYREFGTAQRRHGGGNFRRTTEREDRLVRMNARRNPFLTARQLQN
FT                 RLFESSGTQVSDQTIRNRLREVGLRSYRPVRRPSLDTRHRRARLEWVNSRL
FT                 RENQNWEFVLFSDESRFCLSSDSRRLRVWRRPNTRFEPQFIQPVTAHRGGG
FT                 VMVWGGITLNNRTELHIIQGTLNGIRYRDDIIRGFVSDFRDNIGPQFVFLD
FT                 DNARPHRARCVLEEIRRLGITHLPLPALSPDLNPIEHIWDNLQRRLNNHQP
FT                 QPRNTGELANVLTLLWEEIPQEEIAAVILSMANRCSAVQRVRGGYTRY"
XX
SQ   Sequence 1538 BP; 472 A; 288 C; 312 G; 466 T; 0 other;
     aactactcaa aagttgctaa ggaatttata aataacatca aatataatta acttgcacaa        60
     tgttttgatg tttatctcgt tattttggca ttcaatattt gtttatatta aggaattaat       120
     gcacttgtta gtcgtacaaa ggttaattca ttttgataaa ccacaaaaac aaacattgct       180
     aattttgtcc tttaaaatga ttcagtattc taatgcattt gaaagtgaat gaaccttttt       240
     tttcttctca attctaattt tttatcatgg aaagaagacc tctaagtgat gaaagggcag       300
     atttaattgt ccagtttcat ttacagggcc tttctcagct tgaaattgct aatgctttga       360
     acattgcgcc aagtgttgtt tgccgagcat tgcaaagata ccgcgagttt ggaactgcac       420
     aaagacgcca tggcggtggg aattttcgaa gaaccactga aagagaagac cgcctagtga       480
     ggatgaatgc ccgcagaaac ccttttttga ccgcccgaca gttacaaaat cgtctttttg       540
     aatcctctgg gactcaagta tctgatcaaa cgattagaaa tcgattgaga gaggttggtt       600
     tgcgttcgta tcgcccagtt agaaggccct ctttggatac tcggcacaga agagcaagat       660
     tggaatgggt aaactctagg ttgagggaga accaaaactg ggaatttgta ttgtttagtg       720
     acgagtcaag attctgttta tcgagtgata gcagacgttt gcgagtgtgg agaaggccaa       780
     acactcgttt tgagccacaa ttcatccaac cggtaacagc acaccgcggt ggcggtgtca       840
     tggtgtgggg tggaattact ctcaacaatc gtactgaact acacatcatt cagggcactt       900
     taaatgggat cagatacaga gatgacatta ttcgggggtt tgtctcagac ttccgagaca       960
     atattgggcc acaatttgtt tttctcgacg acaatgcccg ccctcaccgc gccagatgtg      1020
     ttcttgaaga aattcgtcgt ctcggcatta cccacttacc actgccagca ctatcaccag      1080
     acctaaaccc aatagagcac atttgggaca atttacagag acgactaaat aaccatcagc      1140
     cccaacccag gaacaccgga gagcttgcta acgttttaac gttactatgg gaagaaattc      1200
     cgcaagaaga aatagctgcc gttattttga gtatggcaaa ccgttgttca gctgttcaga      1260
     gagtaagagg aggctacacc aggtactgaa aaactattaa ttggattaac aaaataaaaa      1320
     ttgtggaaaa accagtggag atgttttcca caatttgtta ggcgacactc acggcttttg      1380
     ttaaatcctg ttttatcttt gtttttaaaa attttatttc tgaaagataa tgtgatatta      1440
     aaagacaaat gaagcaactt ttatttaaaa aaaaatataa ctctttctgt ctttttttga      1500
     tctttttatt gcaattcctt agcaactttt gagtagtt                              1538
//
ID   Mariner-10_SIn repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   25-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-10_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1648
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 326-326 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. ~240bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1374
FT                 /product="Mariner-10_SIn_1p"
FT                 /translation="MSRKQISLDIRNLVIRDRQSGDSFRIIANKYSISVGA
FT                 VQHIWKKYKTHGIVKNYSGKGRKRATTFRDDTRIVRMVKQNPKLSSRNIVE
FT                 SMNLNVSSRTVRRRLRESGLKNVFASKRPFINKINKKKRFTFAKKYANMPL
FT                 SFWKKVLWSDESKFELFGQKRRSRVWRKPGEALKEVNIQKTVKHGGGNIMV
FT                 WGCFAWSGIGNLAQIEGIMTAEGYIDILCENLEESLLKLDLENNFIFQQDN
FT                 DPKHKAKKTTAFFKSNKVKLLEWPPQSPDLNPIENLWAYLDGNVDKTNVTH
FT                 KTSYYAALQKAWEEIDPEYLKKLVESMPRRLEAVLKAKGGHTKY"
XX
SQ   Sequence 1648 BP; 579 A; 254 C; 306 G; 509 T; 0 other;
     cagtactgga cgaaagaaat catacacctt taaaaaaatt gattttgtta gtgtaactat        60
     ttttttaaca agcaaataga ttattaaata caggaaaatc aaagcatttc aaagtattta       120
     aataaaggaa atatgaaata atcaaaattg ttctcaactt ttttgtaaaa aattgattat       180
     ttaatattgt tacattttac cctggacaaa ataaatcata cacttaaata gtttaacgta       240
     gggaactgcc aatgtttaca tttcgtcgtt ctgctattgt tcgtcattct actgtttgtt       300
     tacattgtat ctacgcttag aatttacgtg tttagtgaat cagagtaact gtaacgagca       360
     agaacaatgt cacggaagca aatttctctt gatatccgaa atttggtcat tcgggaccga       420
     cagagtggtg attcttttag gataattgct aataaatact cgatctctgt tggagcagtg       480
     cagcacattt ggaaaaaata caaaacacat gggattgtga aaaactattc tggaaaaggt       540
     cgaaagcggg ctacaacttt tcgtgatgac accagaatcg ttcgaatggt aaaacaaaat       600
     ccaaaattat catcgcgaaa cattgtggaa tcgatgaact tgaatgtcag tagtcgcact       660
     gtacgtcgta gacttaggga atctggactg aaaaacgtgt ttgcatcaaa gcgtcctttc       720
     atcaataaaa taaataagaa aaagcgattc acgtttgcca agaagtacgc aaatatgcct       780
     ctaagttttt ggaaaaaagt attgtggtct gatgagagca agtttgagtt atttggacaa       840
     aaacggcggt ctagggtgtg gcgaaaacct ggtgaagctc tcaaagaagt aaatattcag       900
     aagactgtaa aacatggagg tggtaatatc atggtatggg ggtgctttgc ctggtctggt       960
     atcggtaatt tggctcaaat tgaaggcatt atgacggcag aaggatatat cgatatcttg      1020
     tgcgagaatt tggaagaatc tcttttaaaa ttggacttag aaaacaactt tatctttcag      1080
     caagataacg acccaaagca taaggcgaag aaaaccactg cctttttcaa atccaataaa      1140
     gtaaaactcc tcgaatggcc acctcaatca ccagatttaa acccgattga aaatctgtgg      1200
     gcttatttgg acgggaacgt agataaaaca aatgtaactc acaaaacatc atattatgca      1260
     gcactccaga aggcctggga ggaaattgat cctgaatact tgaagaaatt agtcgagagt      1320
     atgcctcgcc gactggaagc agtattaaaa gctaaaggcg gccacaccaa gtactaagca      1380
     tcattagaat taattttatt tgtttgttaa ctactacttc taaaagtgta tgatttattt      1440
     tgtccagggc aaaatgtaac aatattaaat aatcaatctt tcacaaaaaa attgagaaca      1500
     attttgatta tttcttattt cctttattta aatactttga aatgctttaa ttttcctgta      1560
     tttaataata tatttgcttg ttaaaaaaat agttacagta acaaattcaa ttttttataa      1620
     ggtgtatgat ttattttgtc cagtactg                                         1648
//
ID   Mariner-11N1_RPr repbase;    DNA;    INV; 533 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-11N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-533
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3257-3257 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 533 BP; 163 A; 93 C; 103 G; 174 T; 0 other;
     cagtggaacc tcgcataacg agcacctctc ttaacgagta attcgcataa cgagtaaaac        60
     aaattgattc ttatagcgag cgatgtttcg cataacgata gttttctaat gacatttcgc       120
     tgactgcgca gttttcgctg actcatcgaa aactgcgcat tcttcgatta gtcattcctg       180
     tttacgcata tgcgtttcat attctccacg tatctaatgc attgatacag tcgaaaccga       240
     acttcaccga atgagtggtg tataggggaa gtccatatag tgatatttgt gtttaaatat       300
     tattgtgttt attttgttat ccctctaaca aaatggcttc gaaaagaatt aaaataacgt       360
     tagaattgaa acgtaaaatc attgagaaac gagaaaatgg tgtaagtgtg gctgatctag       420
     caattatccc cttttatttt aatttatata aaaaaattgt ttcgcttaac gagtatttcg       480
     cgtaacgagt aaggttctgg aacgaattat gctcgttaag cgaggttcga ctg              533
//
ID   Mariner-11_ACe repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-11_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1266
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 521-521 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 88% identical to the consensus.
XX
SQ   Sequence 1266 BP; 416 A; 251 C; 259 G; 340 T; 0 other;
     ttaggtctac aaataagttc tgacctctcc gaattaatca actgtaactt tattataaat        60
     tcaaatcttt ttcccgctgc tttggggatt cgtagtacca acctttatga taaaaaaaac       120
     tacatatgga aatcttgcta gacgacataa tctcacaacc ttaaaagtga gcacgatgtc       180
     gtccgacaac cacgtgaggc attgtattct gttcgctttt caattaaaaa aaagtgttct       240
     cgaagcgaaa gaaatgattt gttccgcttt aggagaaaat gcggtgtctg aaagtacata       300
     caaaaggtgg tacaaaaagt ttcggacaga taatttcgat ctttccgatc aatatcgttc       360
     gggagcacca aaaaaagttg aagacgagga attggatgca gctgttgcaa gaaaatcctt       420
     gtcaaacaca aaaggagctt gctgaacaat tgggtgtcac tcaacaagcg atttcccatc       480
     gattgcagaa gctgggaaga atacagaagg ctggtcgttg ggtcccgcac gtgctcagcc       540
     cagaaaacaa agcgagacga cacagcagtt tgcctgttgt caagatttaa gcagaaggat       600
     tttctgttta aaatcgtaac tggtgagaag tggatcctat acgagaaccc taaaagaaaa       660
     aaatcatggg tttatcctgg agaaccgtca acgtcaattg caaaactgaa tattcactcg       720
     aaaaaagtat tgttatgcat ttggtgggat atgaaaggtg tactatactt tgagttgcta       780
     aaacctaggg aaactgtaac gtctgagcgt tatcaacaac aattgatgcg tttaagtgac       840
     gaaatcgaac gaaaacgatc ctataccggc cagggaactc atcaggtgat actgctgcac       900
     gataacgcac ggcccattcg gcgatagcaa ccaaagaatt aatctatact ttgggaaatt       960
     ctccatcatg cggcttattc tccagatatg gcccctacag atttccactt ctttcgttct      1020
     ctacagcacc atctcgttga tacgcacttt caaacacccg aagaggtcga aaattccata      1080
     accgaattta ttgaatcaaa accaccatcg ttcttccgag cagggattcg ccagctgccc      1140
     gagagatggc aaaagtgtgt cgaaagtgat ggagattatt ttcaagatga catgtgcttt      1200
     ggttttttat aaataaatat caattttctg taaaaaaaaa ggatcagaac ttatttgtag      1260
     acctaa                                                                 1266
//
ID   Mariner-11_AEc repbase;    DNA;    INV; 2034 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2034
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 554-554 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           491..1531
FT                 /product="Mariner-11_AEc_1p"
FT                 /translation="MLLIFGECKRNAREAAILYATRYPQRHHPCATMFYNI
FT                 EKNLRNYGEFEKKKRNKPHLSTTADNILMVLAHLEENPHTSIRAVATETGL
FT                 SKSSVHKMVKQNRYHPYKMTKVQHLRITDSQRRLNFIAWLVVTYESNPEIL
FT                 QNILWTDECKFSNNGVINRHNHHFWSKDNPHWFREHNFQQKVTVNVWCGLV
FT                 YGHLIGPYFYEQNLTAQAYLNFLRSQLPTLLQVLPNDVVQRIYFQQDGCPS
FT                 HNARIVVQYLNSKYGERWLGTYGPIPWPPRSPDLSPLDFFLWGHLQSIVYA
FT                 VPIQNMEHLKQRIRTACEEIRRDSIIGATNGNLLHRAELCLQENGLQFESL
FT                 IVIT"
XX
SQ   Sequence 2034 BP; 672 A; 351 C; 349 G; 662 T; 0 other;
     tacagggtgt cccacgtaac tgtgatcacg atttttccgg cacttccgat gatctgacaa        60
     aaattagttt ggataaaagt taatcagttt tcaatcggct acaaattgca atattaaaaa       120
     tttgcaaaat actctttttt aggaaaaaag tcaaggtcac cctaattttt ttaaatggca       180
     ctacatattt tttacttcat aatattgtaa ctggtgtcaa gacgagttca atgacctgct       240
     atactatgac cttgagatga ccttacagtc agacgtgaag aacaaacgta gccatttcgg       300
     aattcgtgat attcccgaat gtagttcaca cgtgtatgta gtatgtagaa aaaatatcaa       360
     cataacttgt agtatagcgt agctcgaacg cttcaacagt tcttgtgttc agtcttagtt       420
     tgttgttaga gcaaatcata gttcagtctc agtttgtcga aaatgtattc ctataataga       480
     gaaagttgat atgctgttaa tattcggtga atgtaaaagg aatgcacgtg aagctgcaat       540
     tctgtatgcc acaaggtacc cacagagaca tcacccgtgt gcaacaatgt tttataacat       600
     tgaaaagaat ttaagaaatt atggagaatt tgaaaagaag aaaaggaaca aaccgcattt       660
     aagtacaact gcagacaata ttcttatggt cttagcacat ttagaagaaa atccgcacac       720
     ttccattcgt gcagttgcta ctgaaactgg tttatctaag agttctgttc ataagatggt       780
     aaaacagaat cgttatcatc cttacaaaat gaccaaagta caacatttac gtataactga       840
     ttcacaacgt cgtctaaatt ttatagcatg gctagttgtc acatacgaaa gtaatcctga       900
     aatattacag aatatcctat ggacagatga atgtaagttc tcaaataatg gtgtaattaa       960
     ccgtcataat catcactttt ggtcgaagga taatccccat tggttccgag aacataattt      1020
     tcaacagaaa gttacagtga atgtttggtg tggtctagta tacggtcatc tgattggacc      1080
     ttacttttat gaacagaatt tgacagccca agcttactta aattttcttc gttctcaact      1140
     tccaacattg ttgcaagtgc ttccgaatga tgttgtgcaa cgtatttatt tccaacaaga      1200
     tggttgtcca tctcataacg ctcggattgt tgttcaatat ctaaattcaa aatacggaga      1260
     acgttggttg ggcacttacg gaccaattcc ttggccacct cggtcccccg atttgtcacc      1320
     actagatttt tttctatggg gtcatttgca atcaatagtc tacgcggtac caattcaaaa      1380
     tatggaacat ttaaagcagc gaatccgtac agcatgcgaa gaaattcgcc gtgacagcat      1440
     tataggagca actaatggaa atttattaca tagagcagaa ttgtgcctac aagaaaatgg      1500
     actacaattc gaatcactta ttgtaattac ataatttctt tcattaaatt tgttataatt      1560
     ttttgttcta cttttttgtt atgctactat ttttttgttt ataatttgtt gttttgtatg      1620
     tagtttcatt taaaaaacaa gaatccatgt ctgtgaaaaa gtagcagata caaaaatctt      1680
     tttctactgt agaatagtcc atataaaaaa tttaatacaa ataaaataat ttttcacgaa      1740
     aacgtttccg ttcattaatc ccacaactgt aaggtcatct caaggtcata gtatagcagg      1800
     tcattgaact cgtcttgaca ccagttacaa tattatgaag taaaaaatat gtagtgccat      1860
     ttaaaaaaat tagggtgacc ttgacttttt tcctaaaaaa gagtattttg caaattttta      1920
     atattgcaat ttgtagccga ttgaaaactg attaactttt atccaaacta atttttgtca      1980
     gatcatcgga agtgccggaa aaatcgtgat cacagttacg tgggacaccc tgta            2034
//
ID   Mariner-11_BM repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.08, Created)
DT   19-OCT-2011 (Rel. 17.08, Last updated, Version 3)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-11_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1277
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 12(8), 1371-1371 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1217
FT                 /product="Mariner-11_BM_1p"
FT                 /translation="MEKNEVRAVIKYLCLKKLTTQDIHCDLEATLGESAPP
FT                 YSTVARWASQFRVGRTSTEDEHRCGRPSTSVTQENVAKVEKIVLSDRRVTI
FT                 RYLIQETGISYGSIQSILKQSLNMRKVSARWVPRMLTDSQKQNRLDISKIL
FT                 LDKFQEDSENFLSRFVTMDETWVHHFDPETKQQSSQWKRPSSPTPKKFRAV
FT                 ASAGKVMASIFWDSEGILLIDYLERGTTITGQYYAALISKLRNAIKEKRRG
FT                 KLRRGVLFHHDNAPAHRSAVAMAAIQQAGFELVDHPPYSPDLAPSDFYLFP
FT                 KLKEYLRGNRYEDDNEVMDAVESFLQDQDKTFFLKGIEALEKRWTRCVERL
FT                 GDYVEK"
XX
SQ   Sequence 1277 BP; 397 A; 246 C; 295 G; 339 T; 0 other;
     ggatcaaaaa gtagtgagaa cgacatactc cttggtaaga aaaaaaatac tggcaggcat        60
     agctcagata catatttgta atattaataa agaaaaaaat cttcgattct cttttgtttt       120
     tttctgaatg tagtcatttg tttgcttcgt gtcggaacgt gttctcgaaa atggagaaaa       180
     acgaagtgcg agccgttatt aaatacctct gtttaaaaaa gttaacgacg caagatattc       240
     attgcgattt ggaggcaaca ttaggagagt ctgctccgcc gtattccact gtcgcaaggt       300
     gggcttctca atttcgagta gggagaacga gcacggaaga cgaacatcgt tgcggccgtc       360
     catcgacgtc agtcacccaa gaaaatgttg cgaaagtcga gaaaattgta ttgagcgatc       420
     gaagagttac catccgatac ttaatacaag aaacgggcat ttcatatgga agtattcaat       480
     ccatattgaa acaatctttg aatatgagaa aagtctccgc aagatgggtg ccgagaatgt       540
     taaccgacag tcagaaacaa aatcgacttg acatttcgaa gatattgttg gacaagtttc       600
     aagaagattc tgaaaacttt ttgtctcgtt tcgtaacaat ggacgaaaca tgggtccatc       660
     attttgatcc cgagacaaaa cagcaatctt cgcaatggaa acggccatca tcaccgaccc       720
     cgaagaagtt tcgtgccgtg gcatcggctg gcaaggttat ggcctcaata ttttgggact       780
     cagaagggat attgttgatt gattacctgg agcgtggaac cactattaca ggccaatatt       840
     atgcagcttt aatttccaag ttgaggaatg ccatcaaaga gaaaaggaga gggaaacttc       900
     gaaggggcgt gctgtttcat cacgacaacg cacccgcgca caggtcggca gttgcgatgg       960
     ctgccattca gcaagctggc ttcgaattgg ttgaccaccc cccttattca ccagatctgg      1020
     cgcctagcga tttttatctg ttccccaaat tgaaagaata cttaagggga aacaggtacg      1080
     aagacgataa cgaggtgatg gatgccgtgg agagcttttt gcaggaccaa gacaaaactt      1140
     tttttttgaa agggattgaa gccttggaaa agcgctggac tcggtgtgta gagagactcg      1200
     gagactatgt agaaaaataa attattaagt tatcaatagt cattatattc tatctcattc      1260
     tcactacttt ttgatcc                                                     1277
//
ID   Mariner-11_CFl repbase;    DNA;    INV; 1279 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-11_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1279
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 815-815 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1199
FT                 /product="Mariner-11_CFl_1p"
FT                 /translation="MERDKLFFRHVLLHYFDLKKTAVAAHKLLVEAYGDCA
FT                 PSERTCQEWFQRFKSGDYDVNDKQRSGQPKKFEDIELQALLDENSAQTLQE
FT                 LSAVLNVTPMAVSKRLHAMGKIQKEGKWVPHELTENAIANRLNICISLLAR
FT                 QKKKSFLWRIVTGDEKWIYFNNPKRKKSWVDPGQPSTSTPKRNIHGHKAML
FT                 CIWWDMQGVVYYELLRPNESITGDRYQLQLNRLNEALMEKRPAVASNRRKV
FT                 MLLHDNARPHVAKSVKETLMQLEWEVLPHPAYSPDLAPSDYYLFRSMQHGL
FT                 VDTHFKNYEDVRKWIDEWIASKDQSFYRRGIYLLPERWEKCIVSEGKYFD"
XX
SQ   Sequence 1279 BP; 414 A; 243 C; 272 G; 350 T; 0 other;
     ttaggtagta aacttagttt ccgcggttca catttagatg gcgttaattg taggtgtaat        60
     ttactttgac atctgaatgc atctgcattt tagaggttag acatttgtta aaaaaattca       120
     gtgcgaaaag attaatttaa gcgaacagta ttattttttt cttttgatta aacatggaac       180
     gtgataagtt gttttttcga catgtgctgc ttcattactt tgatttgaaa aaaactgcag       240
     ttgcagctca taaattgctt gtcgaagctt atggcgattg tgctccatcg gaaagaacat       300
     gccaagaatg gtttcagcga tttaagagtg gtgattatga tgtgaatgat aaacaacgct       360
     caggtcaacc gaaaaaattt gaagacatcg aattgcaagc attattggac gaaaactcag       420
     ctcaaacgct ccaagaattg tctgcagtat taaatgttac tccgatggct gtttccaaac       480
     gtctacatgc aatgggaaaa attcaaaagg aaggaaaatg ggtaccacac gaattaaccg       540
     aaaatgccat tgcgaatcgc ttaaacatct gtatttctct gctcgccagg cagaaaaaaa       600
     agagtttttt gtggcgcatt gtgactggcg atgaaaagtg gatctatttt aacaatccca       660
     aacgcaaaaa gtcatgggtg gaccccggcc aaccatcaac atccacacca aagcgaaata       720
     tccatggcca caaagcaatg ctctgcattt ggtgggatat gcaaggcgtc gtttactacg       780
     agctactcag accgaacgaa agtatcacgg gggatcgata tcaattacaa ttgaaccgtc       840
     tgaatgaagc attgatggaa aaaaggccag cagtagccag caatcgacgc aaagttatgc       900
     ttttgcacga caacgctcga ccacacgttg caaaatccgt caaggaaaca ctgatgcagc       960
     tcgagtggga agttctcccg cacccagcgt attcaccaga ccttgctcct tcagattatt      1020
     acttgttccg atcgatgcag cacggcttgg tggatacaca cttcaaaaat tacgaggatg      1080
     tgcgaaaatg gatagatgaa tggattgctt caaaagacca atcgttctat cgccgcggaa      1140
     tctacttatt gccagaaaga tgggaaaaat gtatagttag cgagggcaaa tactttgatt      1200
     aatgtatttt ttgcttttga tatcgaaata aatgagtttt ttaagcaaaa aaaccgcgga      1260
     aactaagttt actacctaa                                                   1279
//
ID   Mariner-11_DAn repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1650
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 267-267 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~210-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1405
FT                 /product="Mariner-11_DAn_1p"
FT                 /translation="MRKLSEDIENNVVSLTENGCTSREISKRLGISQSAVI
FT                 AVQKRRNVTPKAQVAGRKKLLKESDARLMMSEMRKNKLLTPKGASLAINKN
FT                 VSEWTARRALRDIGYIASVKKIKPALSVKNVKARLKFARAHKNWTVDDWKR
FT                 VVWSDESKFNRFQSDGKQYCWRRPGDRIQRHHVKQTVKHGGGGIMVWGCFT
FT                 WWHVGPLQLIEGIMRKEDYLQILQTNLPNFIEKCAYPEKEIVFQQDGDPKH
FT                 TAKIVKEWIEKQPFKLMEWPAQSPDLNPIENLWSIVKRRLGQYEAAPSNMG
FT                 ILWERVEAEWRRIPKDIIENLVESMPKRVQEVISNKGLWTKY"
XX
SQ   Sequence 1650 BP; 561 A; 277 C; 337 G; 474 T; 1 other;
     cagtggcgag caaaattgag tgtatgttca gaactcagac tttcgtcacc cacagaatca        60
     taaccacaca agataatccc aaaatttttt ttgttttata ttcattattt tattcttaat       120
     aaattttaag caaaaacagt catgccagag ataaattcta ggagaataac aaaaaaaacg       180
     aaaaaaaccc gcataaactc aattttgcac gtacgcactt tttgcctatt ttcgctttct       240
     aacttctctt atcagcacaa atcggcaaga ttcaccatta tttttgattt tctattattc       300
     ttaatgttcg tagcacagat taaaacgtgc ttcagactaa gcagagtgta actgaattag       360
     cttataatta gaaataaatt tttcaaaatt tgcgagcata aaaatgcgaa aattatctga       420
     agatattgaa aataatgtag ttagcctgac cgagaatggt tgtacatcac gtgaaatttc       480
     caaaaggctt ggtataagcc aatcggcggt aatcgctgtt cagaagagac ggaatgtgac       540
     tcccaaagcg caagtcgcag gtcgcaagaa attattgaag gagtcagatg ctcgactaat       600
     gatgtcggaa atgaggaaga acaagcttct aactccaaag ggtgcttcct tggctataaa       660
     caagaatgtt agcgaatgga cagctagaag agcgctgcga gacattgggt atattgcaag       720
     tgtgaaaaaa atcaaacctg cattatccgt taaaaatgtg aaagctcgat tgaaatttgc       780
     aagggcacac aaaaattgga ctgtggacga ttggaaacga gttgtctggt ctgacgagtc       840
     caaatttaac agatttcagt ccgacggaaa gcaatattgc tggcgcagac ccggagatcg       900
     catccaaaga caccatgtaa aacaaacggt taaacatggt ggtggaggta ttatggtttg       960
     gggatgcttc acgtggtggc atgttggccc tctacagtta atagaaggta ttatgcggaa      1020
     agaggactac ctacaaatat tgcagaccaa tcttcccaat tttattgaaa aatgtgctta      1080
     tcccgaaaaa gaaattgttt ttcaacaaga tggggatccg aagcacacgg ccaaaattgt      1140
     taaggagtgg attgaaaagc aaccttttaa gttaatggaa tggccagcac aaagtcccga      1200
     cctcaatccg attgaaaatc tttggtcaat cgtgaaaaga cggctcgggc aatacgaagc      1260
     agctccatca aacatgggca tcctttggga gcgtgttgaa gctgaatgga gacgtattcc      1320
     caaagatata attgaaaatt tggtagagag catgcctaaa cgtgtacagg aagttatttc      1380
     aaataaaggt ctttggacaa aatattaata ttaatttaat aattaaaaca tctggaaacg      1440
     tgcaaaattg agtttatgck ggtttttttc gttttttttt gttattctcc tagaatttat      1500
     ctctggcatg actgtttttg cttaaaattt attaagaata aaataatgaa tataaaacaa      1560
     aaaaaatttt gggattatct tgtgtggtta tgattttgtg ggtgacgaaa gtctgagttc      1620
     tgaacataca ctcaattttg ctcgccactg                                       1650
//
ID   Mariner-11_DBp repbase;    DNA;    INV; 1643 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1643
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 594-594 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~230-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(331..705,666..881,885..1427)
FT                 /product="Mariner-11_DBp_1p"
FT                 /note="HTH and transposase."
FT                 /translation="MGRGTSLSHKEQIQIQSYIDCDLSVANIAKKIGRSRK
FT                 VMHNFIKNKQNYGKNTKGCQSSVLSDTDKSAILREASNSHDSVSKIRAKAG
FT                 VDASKTTVWRVISKAKHLKRLKLKKNHRLTPNERKHGKKPPLNPKRKEARL
FT                 TFCRVNMSWCNEWRRVVFSDEKKFNLEGPDGYNYYFHDLRKETHQLERLHS
FT                 RVGGVMVGAISYYGTCKLQFLSSNMNAKTYLNVLEKAFPPLENFFNHLPWT
FT                 FQHDNAPIHTARVVKSFLKYKNVETLNWPPYSPDLNIIENVWGWLVRKVYE
FT                 SGKQFSTKDELIDAIQRAWATISLDYIKSLYDSLPNRIYEVILNKGGSTHY
FT                 QINIYIYINTYYCIKTHFLILKFIKYTLKKNVLFM"
XX
SQ   Sequence 1643 BP; 582 A; 264 C; 284 G; 513 T; 0 other;
     cactgcgttt cacttgaata gcacacttta catagggaat tttaaatctc gaaatctttc        60
     aaaaaaaaga taactcgttg atgtttttgt ttctatttat agagtaatca attttaatta       120
     taagaaaagt aacaaaactt aaattaaatt aacaattaat aaagattaac aaaaaaactt       180
     aaaaacttcc aaaattccgc aacaattttg tttcacttga atagcacatt ttagatttag       240
     tgtcatttca gcagccaaga agattgattc ataaaaagtt ttttgattaa tttgtgaatt       300
     tcaaacatag tttaatcatt ttgtgcaatt atgggtcgtg gaacgtcact aagtcacaag       360
     gaacagatcc aaatacaaag ctatattgat tgtgaccttt ctgtggctaa tatagcgaaa       420
     aaaattggaa gaagcagaaa agtcatgcac aattttataa agaacaagca aaactatgga       480
     aaaaatacga aaggttgcca aagtagtgtc cttagcgaca cagataagag tgcaattctg       540
     cgggaagcct caaattctca cgactctgtg agcaagataa gggcaaaagc aggtgttgac       600
     gcgagcaaaa ctactgtttg gcgagttatt tccaaagcta aacatcttaa acgcttgaaa       660
     cttaaaaaaa accaccgctt aaccccaaac gaaaggaagc acggttgacc ttttgccgcg       720
     tcaatatgtc atggtgtaac gagtggaggc gcgtagtttt ttctgatgaa aaaaagttca       780
     atttggaggg gccagatggc tataattatt attttcatga tctgaggaaa gagacgcatc       840
     aattggagcg tttacacagt cgagtaggcg gagttatggt ttgaggagcc atatcttact       900
     atgggacttg taaactccaa ttcttatcct caaacatgaa cgcaaaaacg tatctaaacg       960
     tcctcgaaaa agcttttcca ccattggaga attttttcaa tcatttgcct tggacattcc      1020
     agcacgacaa tgccccaata catactgcac gtgttgtaaa atctttttta aaatataaaa      1080
     atgttgaaac tctgaactgg ccaccatact cgccggatct gaatataatt gaaaatgttt      1140
     ggggatggct ggtcagaaag gtttatgagt ctggcaaaca gttttcaaca aaagacgaac      1200
     taattgacgc cattcagagg gcctgggcta caatatcctt agactacatt aaaagtctat      1260
     atgattcgct gcccaacagg atctacgagg ttatattgaa taaggggggc tcgacccatt      1320
     atcaaattaa catatatatt tacattaata cttactattg cataaaaaca catttcctaa      1380
     tacttaagtt cattaaatat actttaaaaa aaaatgtgct attcatgtga aacaaaattg      1440
     ttgtggaatt tttgaagttt ttaagttttt ttgttaatct ttattaattg ttaatttaat      1500
     ttaagttttg ttacttttct tataattaaa attgattact ctataaatag aaacaaaaac      1560
     attaacgatt tttctttttg tttaaaagat ttcgagattt gaaattccct atgtaaagtg      1620
     tgctattcaa gtgaaacgca gtg                                              1643
//
ID   Mariner-11_DEl repbase;    DNA;    INV; 1662 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1662
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4032-4032 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..1387
FT                 /product="Mariner-11_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MGPRTTLDQRELVLKHFKNGHSRRNIAEMVGLSDGTI
FT                 QSIIYRFVHENRTHDKPRNAPNKIFNQMDERFIVRKIRENPKISSPKIATE
FT                 VEAELGKXCHPETIRRVLRNHGYNGRIARKKPFISAKNINARLKFAKEHLG
FT                 KDSAFWNTVIFADESKFNIFGSDGATYVWRKPNTELQTKNLKATVKHGGGS
FT                 VMVWACMAASGVGNLAFIDTTMDKXXYLDILRSNLHDSADKLGIREDFRFY
FT                 QDNDPKHKSGIVQTWLVWNCPHVEQPPAQSPDMNVIENLWAILDANIRKRK
FT                 ISNKSDLKTALVEEWSKIGPEVTQKLVDSIPKRLKMVIDNKGGHTKY"
XX
SQ   Sequence 1662 BP; 558 A; 286 C; 325 G; 489 T; 4 other;
     cagtggctca cagcttattt caaccagcaa ccaaaaaaaa cttctacagc ctataaaagc        60
     taaaccaaac aagatatgaa caaaatttaa atgcacgatc tttttgtaat ggttatattt       120
     attagtttgt aacttcatat aattttcata attttgtaaa tatttttaat ttaattaaga       180
     acaaaaaatc aacaaaaaaa aggccacagc ttatttcaac cacctacttt gctgctgtgt       240
     aaatcaccgt tcctttttaa tataacggtt cttttttttt ctatgctttg gtatttatat       300
     tcgaagttcg tttaagttta gtcacgtgaa attagtaaga agatcactca gtcataatta       360
     gtttgccaaa atggggccgc gtacgacttt ggatcagcga gaacttgttc taaaacattt       420
     taaaaacgga cattcgcgca ggaatattgc tgagatggtt gggctgagtg atgggacaat       480
     ccagagcatc atctaccgct ttgtacacga gaatagaacg cacgataagc caagaaatgc       540
     tccaaataaa attttcaatc agatggacga acgctttatt gtccggaaaa ttcgggaaaa       600
     tccaaaaata tcatctccga aaattgccac tgaagtagaa gcagagttag gaaagasttg       660
     ccacccagaa acaattcgtc gagtgctccg aaaccatggg tataatggta gaatagctcg       720
     gaagaagccg ttcatcagcg ctaagaacat caatgcccga ttaaaatttg ctaaggagca       780
     cttgggaaag gattctgctt tttggaacac cgttatattt gctgacgagt cgaagttcaa       840
     catttttggc tcagatggag ccacctatgt gtggcgtaag cctaatacag agctgcaaac       900
     aaaaaattta aaagccacag taaagcacgg cggaggaagt gttatggttt gggcctgtat       960
     ggcggcgtca ggagttggaa acttggcgtt cattgatact acaatggata aamatcwtta      1020
     cctcgatatt ttgaggtcca atttgcacga tagcgcggac aagctgggma ttcgtgaaga      1080
     ttttcggttt taccaagata atgacccgaa acacaagtcg ggaattgtac aaacctggct      1140
     ggtttggaat tgtccgcatg ttgagcaacc gccggcacag tcacctgaca tgaacgttat      1200
     cgaaaatttg tgggctattt tagatgcaaa catccgtaaa cggaaaattt cgaacaaatc      1260
     ggacctaaaa acggcattgg ttgaggaatg gtccaaaatc gggccagaag tcacccaaaa      1320
     gttggtcgat tcaattccaa aacgtttaaa aatggtcatt gacaacaaag gagggcatac      1380
     aaaatactaa aaaattatta aatagctata atcattacat ataaattaat ctagctaact      1440
     ggttgaaata agctgtggcc ttttcttttg ttgatttttt gttcttaatt aaattaaaaa      1500
     tatttacaaa attatgaaaa ttatatgaag ttacaaacta ataaatataa ccattacaaa      1560
     aagatcgtgc atttaaattt tgttcatatc ttgtttggtt tagcttttat aggctgtata      1620
     agtttttttt ggttgctggt tgaaataagc tgtgagccac tg                         1662
//
ID   Mariner-11_DF repbase;    DNA;    INV; 1660 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-11_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1660
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 778-778 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 27-bp TIRs. The consensus
CC   is ~90% identical to that of Mariner-5_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           487..1359
FT                 /product="Mariner-11_DF_1p"
FT                 /note="transposase."
FT                 /translation="MPFKYDWKSKTRGPKRKTTDIKDRRIVCFSKANPLAS
FT                 SRDVKVELKLGISDVTIRLRLVNGNLNARSPRKVPLLGKRHIQARLEFAKS
FT                 HLYWPVTKWRNILWTDESKLVLFGGTGSRQYVRRPPNTEYHPNHPLKTVKH
FT                 GGLKILVWACFSYSGVGRIHMIYGIMDQHVYVDILKNVMLPYAQWDMPLKW
FT                 SFQQDNDPKHTSKLAKSWFIQENIDVMSCPAQSPDLNPIENLWGDIKRYVA
FT                 KKSPTSKSQLWQFVPDAWAQIPPKRCQDLVDSMPRRCEAVIANKGFTTKY"
XX
SQ   Sequence 1660 BP; 538 A; 288 C; 326 G; 508 T; 0 other;
     cagctgtgtt cataataata gcagtgcaat agcaacgaag taaaacaacg gtaattttag        60
     catattcctt ttcgttagtt gatcgcttga tcattttttt tgtaaaatgg aatatagaga       120
     taggaaaact aaaaaagttc cattagattt gctttttatt ttcgtttttt ggacattctt       180
     gtgcaaaatc acaagttttt ggctgttcat aataatagca gtttttcatt ttaatccaca       240
     aaaagtgccg aaaacattaa aaattttgca aaaagtgagt ttgcttgagt taattaatat       300
     aatttaaatg aaaatacaca ataaccatgc aaaaatttta attttagtgg gtagaggaca       360
     acactgttca gaggaagaga ggaatttgat agttcagctt agaaagcagg gaaaaaccta       420
     tcaacaaatc caagatatgg taaattgttt taccaaaatg gtatccaatg ccatttatgg       480
     catccaatgc catttaaata tgattggaag tccaaaacac gtgggcccaa acgaaaaaca       540
     accgatatta aggaccgacg aatagtgtgc ttcagcaaag cgaatcctct tgcatcttct       600
     agggatgtaa aagtggagct gaagttgggg atcagcgacg tcaccattcg ccttcgatta       660
     gtaaatggaa atttaaatgc gcgaagcccc cgaaaggtgc cattacttgg taaaaggcat       720
     atccaagctc gattggagtt tgccaaaagc catttgtact ggccagtgac gaaatggcgc       780
     aatattcttt ggacagatga gtccaaactg gtcttgtttg gtgggacagg ctcaagacag       840
     tatgtccgac gacccccaaa cactgagtac cacccaaacc accctcttaa gaccgttaag       900
     cacggtggcc ttaaaatatt ggtatgggct tgtttttcgt acagcggcgt gggtcgcata       960
     catatgatct atgggatcat ggaccaacac gtctatgtgg acatactcaa aaatgttatg      1020
     cttccttatg cacagtggga tatgccctta aaatggtcat tccagcagga taacgaccca      1080
     aaacatacca gcaaattggc taagagctgg tttattcaag aaaacattga tgtaatgtcg      1140
     tgtccagcac agtccccgga tttaaatccg attgaaaatt tatgggggga catcaagcga      1200
     tatgtggcaa agaaatcccc gacttcaaag tcgcagcttt ggcaatttgt accggacgcg      1260
     tgggcgcaga ttccccccaa gcgttgccag gacttggtgg actccatgcc acgtaggtgt      1320
     gaagctgtaa tagccaataa aggttttacg acaaaatatt agttaatatt tatcattatt      1380
     gttatttgta ttaagttatt tttaagattt gttgaatttt ttaatttttt ttggtaacac      1440
     tgctattatt atgaacagca cattttgtcg ttattatttt gttattatga atattttcga      1500
     aaaaaatgga gttattaaac tgaaacaaat gttaacataa ttaaaattaa atatattatg      1560
     ttgatgtaaa ccaaatttgt cccaatttag tgtttatact atgatttttc gatcttaaac      1620
     atttacgtca tcagcactgc tattattatg aacacagctg                            1660
//
ID   Mariner-11_DK repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-11_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1630
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1204-1204 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 25-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1630 BP; 575 A; 272 C; 302 G; 474 T; 7 other;
     cagtgsacaa ataaagttta agtacaaatt atactwcttc tttggtcaaa attagcaaca        60
     agacttatcm aaatkgattt ttttttggga tttcattaac taaactttta agactttaaa       120
     tataataaaa caacatttgt aacttcaacg caattttaat aattctaaga aacgaaagaa       180
     atggtcataa agaatgccaa aaaagtttac gtacgtttgc catgaaatct ccaaggaaat       240
     tttatggcga atctagcggt gatcgtggat tcttcagtta gtctaattct gatgctgttg       300
     ttttttatgc attttaagtt caattatttt ggtatagctg tcgtgaagga aaaagatggg       360
     tcgagaaagt gaaattctac ttgaaatgcg aaaaataatt tttaaaaatt atttggaagg       420
     aaaaggagca cgtgttattg gcaggatagt tcagaggcct ccatcaagtg tccaaactat       480
     aattaactcc aacggaaact ctggaactct ggagaaaaag gccagatcgg gtcgtccaaa       540
     aatattgtct gatagggacg awcgcmaaat cctgggctca gtaaaagcca atccgaaaaa       600
     ttctgcacct aaaatacagg agaaactatt acaaagctca ggcaaaaaag ttcgccctca       660
     aacggtacga aatgtgctcc acaagaacgg gtacaaggca agaacacctc gcaggaagcc       720
     tttgattttt attgtaaaac gtaagaagag gctggatttt gcaaacaaat atttaatcga       780
     gccggaatca ttttgggata atgtcatctg gagtgatgag tccaaattca acatttttgg       840
     ttcggatggg tctcaaaaag tatcgagaaa tcccaataaa gaaatggatc taaaaaatkt       900
     aaccccaacc gttaagcatg gaggcggtaa catgatggtt tggggctgca tggcgacagc       960
     tggagttgga aaacttgtct ttataaatac tacaatggac aagcatgcat acctaaaaat      1020
     tttgaaggac aatcttaagg acagcgcgac ccagctccag ttaaacgaga cttacatttc      1080
     tctttcaaca ggacaacgac cccaaacaca cctcatattt ggttaaggag tggctgcttt      1140
     ataactgcaa gcaattgcat acacctccac agtctccaga cctcaatccc attgagcaca      1200
     tttggaattt gctggataaa aggatcagga agcaccaaat atcttcaaag gagtatctta      1260
     agcaagttat acaatctgag tgggagaaaa tacacaaaat gataccaaag tgttggtaaa      1320
     tagcatgcaa cgacgtcttc aagcagtcat tgcagcaaaa ggaggtccaa ctaaacaatt      1380
     aaggagacag gagttaattt tcttctaagc gtacttaaac ttttttgacc taaaccatga      1440
     agtattttta taattttaat ttttattatt tagtttttat attaaataag caactgaaaa      1500
     gctttttatg ttattaaata tataatctac ccaatggaaa tttaaaaaaa ttttatcttg      1560
     tttttttagt aggtttttac atgcatttag ttgcagaact agaatgtact taaactttat      1620
     ttgtccactg                                                             1630
//
ID   Mariner-11_DRh repbase;    DNA;    INV; 1662 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1662
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1405-1405 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. 792-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1662 BP; 533 A; 297 C; 296 G; 536 T; 0 other;
     cagtggctca cagcttattt gacccacacc taattttcaa cattaaacag gtataactcc        60
     tgaaccataa gagatacgca taaaaataaa acgcagaaag gttaactgtt gttttaactt       120
     caaaaatatg ttttcattta tttattctag caaggaactt cttaattaaa caataaaaac       180
     taaaaatact gcctttttca atgtcacagc ttatttgacc cagttcatca aattaattat       240
     aaaaaattgc aaaaaaatat ttttttaact tttagtattt ggtatgtccg cccttttggt       300
     ccacaaccga cttcagtcga ttgggaatag attcgaccaa tttttttgag gttcctgggg       360
     tgattttagc ccattcttcg agcaaagccg ttttcaagtc atttttattg gaaatattgc       420
     gctcccgaat ttttgagtcc cgcaaagccc acaaattctc aataacatta aaatcgggtg       480
     actgagctgg agatttcatt atattgggac aattatatcc cagccaatat tgaacaatac       540
     cctacttatg ctttgggtca ttgtcttggt agaaccgaaa accctgtttt attcccaatt       600
     tctcagcact ttggagtaaa ttatccttaa ggatattaag ataaacattt ttattcatta       660
     tgctttcaat aaattttagg tttccgactc ctgctgcgga cttacaggcc caaaccataa       720
     cgtgtccgcc gtcatgctta acggtgggtt ttagatgttt gtcctgcagc tctgtattgg       780
     ctttacgcca tacatttaga cccaaaaata ttacgtcatt ttcgctgatg agtcaaaatt       840
     taatatattt ggtccgagga cgttcttagc tatggcgtaa agccaataca gagctgcagg       900
     acaaacatct aaaacccacc gttaagcatg acggcggaca cgttatggtt tgggcctgta       960
     agtccgcagc aggagtcgga aacctaaaat ttattgaaag cataatgaat aaaaatgttt      1020
     atcttaatat ccttaaggat aatttactcc aaagtgctga gaaattggga ataaaacagg      1080
     gttttcggtt ctaccaagac aatgacccaa agcataagta gggtattgtt caatattggc      1140
     tgggatataa ttgtcccaat ataatgaaat ctccagctca gtcacccgat tttaatgtta      1200
     ttgagaattt gtgggctttg cgggactcaa aaattcggga gcgcaatatt tccaataaaa      1260
     atgacttgaa aacggctttg ctcgaagaat gggctaaaat caccccagga acctcaaaaa      1320
     aattggtcga atctattccc aatcgactga agtcggttgt ggaccaaaag ggcggacata      1380
     ccaaatacta aaagttaaaa aaatattttt ttgcaatttt ttataattaa tttgatgaac      1440
     tgggtcaaat aagctgtgac attgaaaaag gcagtatttt tagtttttat tgtttaatta      1500
     agaagttcct tgctagaata aataaatgaa aacatatttt tgaagttaaa acaacagtta      1560
     acctttctgc gttttatttt tatgcgtatc tcttatggtt caggagttat acctgtttaa      1620
     tgttgaaaat taggtgtggg tcaaataagc tgtgagccac tg                         1662
//
ID   Mariner-11_DSuz repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1650
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 94-94 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
SQ   Sequence 1650 BP; 556 A; 297 C; 325 G; 471 T; 1 other;
     cagtggctcg cagcttattt cgtgcagcaa cctaaaaaaa gttatagtcg ttatttctgc        60
     taaactaaga aagatatcag aaaaatttaa atgcagtata ttaataggga gtattaacat       120
     gtttattgaa cgaaagcgat tttcttcatc ataaaaacaa aaaagtaatt taataaaaac       180
     aaaatgtaca ggctttttcc atgccgcagc ttatttcgtg cagtatgttt gaagtaaaaa       240
     aatttaacat ttagtcctaa aaatcgcaga ttttattatt atttgatcgt ttaaaatact       300
     aacaaataca tattttatga gtttccgagc tgggttatac ttatataaag agatmcaggg       360
     gagttaccga aatggcacca cgcccaacta ttgagcagcg agaacttgtg cttaaacatt       420
     ttaaaagtgg aaaaagtcag cggatcattg cagaaatggt atccctaagc cctagtacag       480
     tacagtacat catccaacgg tttgtccgag agaaccgcat tgcagatgaa ggccgaaaag       540
     ctccaaataa aattttcaac gatcatgaag agcgccgtaa tgtccggaaa attaaggaaa       600
     accccaagct atcggctcca aaaatagctg cagaggtcga ggacgaaatg ggcaataagt       660
     gtagtcctga tacggtgcgt cgtgtacttc acgataataa cttcaatggt cgagtagcac       720
     gaaggaatcc atttatttgt aagacaaata ttgctgctcg gctaaagttt acaaaggagc       780
     acatactttt accaatttcg ttctgggatg acggtatctt tgctgacgag tcaaaattta       840
     acatttttgg ttcagaagga cgacaatttg tgtggcggcg accaaataca gagttggaga       900
     ataagcacct gaaacctacg gtcaaacatg gcgggggtca cgtcatggtt tcgacctgta       960
     tggcagcctg tcgcgtgaac aacctcattt tcattgatgg catcatggac accaacatgt      1020
     acctcaacat tttaaaggag aacttactgt aatctgctga aaaactgggc atacgcgatc      1080
     gttttcgatt ttaccaggat aatgatccga ggcattcagc aggaaatgtg aagttttcgc      1140
     ttatctggaa ctgccctcgt gtcttcataa cgccagcaca gtctccagat ttgattgtaa      1200
     tcgaaaattt atgggaaata ttggacatcg ctataaggaa gaggaaaatt tcgaacaaaa      1260
     acgatctgaa aactgctcct atggaagatt ggccaaaaat tccagtggaa accactcaaa      1320
     agttagtttc ctccatggga aatcgtctca aagctgtcct gaaccagaaa ggaggacata      1380
     caaaatatta gctcttaaat taaaattatt aagttaagta gaatcgactg cacgaaataa      1440
     gctgcggcat ggaaaaagcc tgtacatttt gtttttatta aataactttt ttgtttttat      1500
     gattaagaaa atcgctttcg ttcaataaac atgttaatat tccctattaa tatactgcat      1560
     ttaaattttt ctgatatctg tcttagttta gcagaaataa cgactataac tttttttagg      1620
     tagctgcacg aaataagctg cgagccactg                                       1650
//
ID   Mariner-11_HSal repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   07-DEC-2011 (Rel. 19.04, Created)
DT   07-DEC-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 851-851 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1213
FT                 /product="Mariner-11_HSal_1p"
FT                 /translation="MENQREHFRHILLFYYRKGKNAAQARKKLCAVYGEDV
FT                 LTERQCQNWFSKFRSGNFDLKDAPRSGRPVEADEDQIKALVDANRHLTTRE
FT                 IAERLNLSNSTVHEHLKQLGFVSKLDIWVPHVLKERDLIRRITICDLLLKR
FT                 EENDPFLKRLITGDEKWIVYNNIKRKRSWSRRDEPAQSTSKADIHQKKVML
FT                 SVWWDWKGMVFFELLPNNQTIDSNVYCHQLDKLNDSIKQKRPELANRKGVV
FT                 FHHDNARPHTSLMTRQKLLALGWDLLPHPPYSPDLAPSDYHLFRSLQNSLD
FT                 GKNFDSNEGVKNHLIQFFANKDQKFYERGIMLLPQRWQKVLEQNGQYLTE"
XX
SQ   Sequence 1292 BP; 413 A; 233 C; 266 G; 380 T; 0 other;
     tattgggttg ttcggaaagt aatttcggtt ttttcaaata gatggtgtta gttgcctttt        60
     taagcagtta acctcattct aaaccagaaa atcattttac atttttacaa cgcacatttc       120
     aagcttcgtt tgaaaaaaag ttgttttgga atctgtcaag ttgtttttgt ttggcgtcgc       180
     atcaaaaatg gaaaaccaac gtgagcattt tcgtcacatt ttgctttttt attaccgtaa       240
     aggcaaaaat gcagcgcaag caagaaaaaa attgtgtgcc gtgtatggag aggatgtgtt       300
     gactgaacgc cagtgtcaga attggttttc gaaatttcgt tctgggaatt tcgacctcaa       360
     agatgcacca cgttctggaa ggccagttga ggctgatgaa gaccaaataa aggcattggt       420
     ggacgcaaat cgtcatttaa caacacgaga aattgctgag agattgaatt tatcgaattc       480
     gaccgtgcat gagcatttga aacaacttgg tttcgtttca aagctcgata tttgggttcc       540
     acacgttctc aaagaaagag atttgattcg tcgcattacc atctgcgatt tgctgttgaa       600
     acgtgaggaa aacgatccat ttctgaagcg actcataact ggagatgaaa aatggattgt       660
     gtacaacaat attaaacgca aaagatcatg gagcagacgt gatgaaccag ctcaaagcac       720
     atcgaaagct gatatccatc aaaagaaggt gatgctctct gtttggtggg attggaaagg       780
     aatggttttt tttgagctgc taccaaacaa ccaaacgatt gattcgaatg tgtattgtca       840
     tcaattggac aaattgaatg attccatcaa gcagaagaga ccagaattgg cgaacagaaa       900
     aggtgttgtg tttcatcatg acaacgccag acctcacaca agtttaatga ctcgccagaa       960
     gctgttagcg cttggatggg atttgctacc gcatccacca tattcacctg atctggcacc      1020
     atccgattat cacttgtttc ggtcactgca aaattctttg gatggtaaaa atttcgattc      1080
     aaatgaaggt gtcaaaaacc acttaattca gttttttgcc aataaggacc agaagttcta      1140
     cgagcgtgga atcatgttat tacctcaaag atggcaaaag gtgttagaac aaaatggtca      1200
     atacttaaca gaataaaact tttctttcta ttaaaaatat cgtctttcat tttcatgcaa      1260
     aaaaccgaaa ttactttccg aacaacccaa ta                                    1292
//
ID   Mariner-11_LHu repbase;    DNA;    INV; 1278 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1278
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 369-369 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1199
FT                 /product="Mariner-11_LHu_1p"
FT                 /translation="MNRNKVFFRHVLLHYFDMKKTAAETHRLLSETYGEEA
FT                 PSKTTCIEWFQRFRSGDSSVEDKKRSGQPKKFEDAELQALLDENPSQTLLE
FT                 LSKVLDVTQMAVCKRLHALGKIHKEGKWLPHELSENAILNRLSIATSLLAK
FT                 QHKKSFLWRIVTGDEKWIYFDNPKRRKSWVDPGQPSTSTPKRNIHGHKALL
FT                 CVWWDQEGVLYYELLHPNQTVTADRYRQQLHRLNDALMQKRPSVASNRRKV
FT                 ILLHDNARPHVAKIVKDTLLELKWEVLPHPAYSPDLAPSDYHLFRSMQHAL
FT                 GDTHFSSYEEVQKWVDEWFASKNSAFYRRGISLLPERWAKVIENKGKYFD"
XX
SQ   Sequence 1278 BP; 409 A; 241 C; 269 G; 359 T; 0 other;
     ttaggtgtta aacttagttt ccgtttctca caagtagatg gtgctagcta cagacgaaat        60
     aaattttgat gtttgaagtt gcttgtttta tgaagaataa acattggtca atacaattta       120
     gtgtgcaaag attgattatt gtgtaaacag agagattttt taatcgatga aaaatgaatc       180
     gtaataaagt attttttcga catgtacttc tccactattt cgacatgaag aaaactgcag       240
     ctgaaacgca tcgcttactg tccgagactt atggtgaaga agctccatca aaaacaacgt       300
     gtatagagtg gtttcaacgt tttcgaagtg gtgattctag cgtggaagac aaaaaacgtt       360
     caggacagcc gaaaaagttt gaggatgccg aacttcaagc tttactggat gaaaatccat       420
     ctcaaacgct tttagaatta tcgaaagtgt tagatgttac tcaaatggct gtttgcaaac       480
     gcttacatgc cctcggaaaa attcataagg aaggaaaatg gctgccacat gagttgtccg       540
     aaaatgccat cttaaaccgt ttgtccatcg caacttcttt gcttgccaag caacataaaa       600
     agagtttttt gtggcgtatt gtaaccggag atgaaaagtg gatctacttc gataatccca       660
     aacggagaaa atcatgggtg gatcccgggc aaccatccac ttcgacacca aaacgaaata       720
     ttcatggaca taaggctctg ctgtgtgttt ggtgggacca agaaggcgtg ctttattatg       780
     agctgttgca tccaaatcaa actgttaccg ctgatcgcta ccgacaacaa ctgcatcgat       840
     tgaatgatgc attgatgcaa aaaaggccat ccgtagctag taatcgacgc aaagtgatcc       900
     ttttgcacga caatgcgcga ccgcatgttg caaaaatcgt gaaagacaca cttttggagc       960
     tcaaatggga agttcttcca cacccagcgt attctccaga cttggctcca tcggattatc      1020
     accttttccg atcgatgcaa cacgcgctcg gagacacaca cttctccagt tatgaagaag      1080
     ttcagaagtg ggtggatgaa tggtttgctt cgaaaaatag cgcattttat cgtcgcggaa      1140
     ttagtctcct gccagaaaga tgggcaaaag tcatagaaaa taagggaaaa tattttgatt      1200
     aatgtattta ttttactctc tttctaataa atgaattttg taagacgaaa aatgacggaa      1260
     actaagttta acacctaa                                                    1278
//
ID   Mariner-11_PBa repbase;    DNA;    INV; 5076 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5076
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 624-624 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. Termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2092..2442,2400..2969)
FT                 /product="Mariner-11_PBa_1p"
FT                 /translation="MLCMIIVSIIMALVEPGRTKFRLSSLQLLINHLATVQ
FT                 EIINAANVQVSERTVRRRLNEAGYRCYRSAHKIPLTPVHREQRVAFALENL
FT                 ATSREVWEATIWTDEKVFVSSVDRKPHGVKGLRIVCRPQTSWRLRDQRLHP
FT                 NHVVPIHRSGRISCAMWDWISGTAVDELVDIPTRMTSAEYIRILEEIFLPS
FT                 VRAIYPAEDMPVIRLVQDNSGVHTSRETQAWFRNHPEIQLVNWPARSPDLN
FT                 LIENVWAQMVQRWEPRRERTVAALVNHAREIWEELRFQPDFLSNLIDSIPN
FT                 RLNQVIDRSGYWTDY"
XX
SQ   Sequence 5076 BP; 1604 A; 918 C; 922 G; 1632 T; 0 other;
     caggagacac ggtagtgtct cgggtgtcaa gtcaaccgag aacactgccg tgtgacttta        60
     cgcgagtcgg cgagatgcga gcatccgaaa ttatcggatc tcaataacgg ctaaaccgat       120
     caagttctaa gtaggcttga tcgatagctt gtggttcgac ttgcataata aaagtatttt       180
     tatttttctg ctacgtgccc cacgagcgga gatattgcta cgcaaagtcc gatttggaaa       240
     tttttacttt aagaaacgtc gtcattatcg tcgtcgcccg gttctcatct acggttgcaa       300
     tttctgtcac ggaggcgcca ctgtccaatg tacacgcacc ggcgggaatg gtgtctgtgc       360
     gctcggcgcg cggccgctac acatacacac gaagcgcgta cgtccgtgtc tccgcggagc       420
     gcgaaggaga tcgcggagcg gagagaaaaa atagtggggg caattcgatg ttgcatcctt       480
     aacgcaagac gcgcgatcga gagagaaagc ataatcggac gtgataccga tttcggtgtc       540
     ccttcgctgt ctcacacact cgacactagt gcgagtgaga gaccgcggtg tctctatacg       600
     tcgcgctttc ctttctttcc ctctcgttct gattaattat tgattattta atgattattt       660
     atttatttaa ttgattattt aaatatgatt attaattgtt taaatatcgc gtaataattc       720
     ttttgttata tattttaaaa aaagttatgt gtaaaattat aactatcatt gcgtttggac       780
     attgaatgtc ttacagctat ctcaagcagc cgatattaaa aattatttaa taaagtaatg       840
     aattcgcgaa actgtattaa aaaataagga agattatatt caataataat aaaaagttat       900
     tataaataaa aatgtgaaaa taattgaaaa taattattaa aataagtatt ttcgaaatga       960
     atattatgtt ataaatttaa aatttgaatt tgcaataatg tgattataaa aagtattatt      1020
     tttatacgtt atttcacgtt caattatatc atttttatac acatactttt aattgtaaat      1080
     gtaattctac aatcttactt acgacacaag aagttaactt tatttcaaca ctacaaattt      1140
     ataaatgcgc ggaaaactat tacaatgaat cttcaaaccc acaatgacag ttgtaatttt      1200
     acatataact tttttttaaa tgtataatag aagaattatt acgcaaccat aattaaataa      1260
     tcaattaaat caataattag ataatcatta agtaatctat aattaatcat ttaatgatta      1320
     tttaattatt gatttaattg attatttaat tgtgattgcg tagtaattct tctattatac      1380
     attttaaaaa gaagttatgc gtaaaattac aactatcatt gctaatttgg agactcatgt      1440
     aacagtttta cgcgcatttt taaatttgca acgtgcaaat aaacttcttg tgctataaga      1500
     ttgtaggatt acatttacaa ttaaatgtaa gtgtttagaa atgatacgat ataacgtgaa      1560
     ataatacttt tacgtctaga aataatactt ttcataatta tattattaca aatttaaatt      1620
     ttaaacttac aatatagtat tcatttcgaa catatttatt ttaattttca catttttatt      1680
     tattaataac tttttattgt tattgaatat aatctgcctt atttttgaac cacagtttat      1740
     atgtctcaat caaccatgcg tcgcttccgc gcgtcgcttc cgcgcgtttt tttctttctt      1800
     tgtttattgt tttgctgcta ggagaccgcg attgtttttc aactgttttt ctcgacttct      1860
     caactacttt tttcttattg aattacttat cgtggtgtca tagcattgaa cggacgcgat      1920
     tattgtgata cgaattgtga acgatgcctc gaaacttgtg tccggaaata cgaggtcgta      1980
     ttgttggaca ggctcaggcc ggaagatcag tagcagaaat tgctgctgaa attccatgtt      2040
     ctgagaagac tgttcgacga tggatacgac gatttgctga aggcggtgat catgctttgc      2100
     atgatcatcg tcagcataat catggccctc gtagaaccgg gccgaacgaa gttcaggcta      2160
     tcgtcgctgc agttgctgat caaccatttg gctaccgtcc aagaaatcat caacgcagcg      2220
     aatgttcaag tatccgaaag gaccgtccgg cgacgtctca acgaagccgg gtatcgctgc      2280
     taccgatcag cccacaaaat tccgctgact cctgttcatc gggagcagcg tgtcgcgttt      2340
     gctttggaaa acctggcgac gagccgtgag gtgtgggagg caacgatctg gaccgatgaa      2400
     aaggtcttcg tatcgtctgt cgaccgcaaa cctcatggcg tctaagggat caacggttgc      2460
     atccaaatca tgttgtgcct atccacagaa gtggaaggat ttcttgtgcg atgtgggact      2520
     ggatttctgg cactgcagtc gatgaactgg tggacattcc cacacgcatg acttctgcag      2580
     agtacattcg catactggaa gaaatctttc ttccatcagt acgcgcaatc taccctgcag      2640
     aggatatgcc agttatccga ctagtgcagg ataactccgg agtccatacc tcgcgtgaaa      2700
     cacaagcatg gtttcggaat catccggaga tccaattagt gaattggcct gctcgttcgc      2760
     cagatctaaa tttgatcgaa aatgtctggg cacaaatggt tcaacgatgg gaaccaagaa      2820
     gggagaggac ggtagcagcg ttagtcaatc acgcgagaga aatatgggaa gaacttcggt      2880
     tccaaccaga ctttctctca aacttgattg attcgatacc taatcgactc aatcaagtca      2940
     ttgaccggtc tggatactgg acggattatt aaaaagatgc ttccgcgctt gccccacgat      3000
     cggccctttt cagggcccct aaacttttca caccgcggat agagacgcct atagaggcgt      3060
     ctcactcgtc cgaatagctg actggtcggc ggtgttcggc cagtaggctt attctgtgct      3120
     aactcttgac gagatcgtta tcgttatgtt gtcgttgcgc agcttttttt aactatattt      3180
     tatgcgcaat gacaacataa caataacagt attgttaaga gttatagaaa gcaggcgcaa      3240
     caccgtgtct tacgtcttgc tcgcactcct attcaaacat tgaatgcctt cctatctcaa      3300
     gcagccgata ttaaaaatta tttaaaaaaa taataaattc gcgaaatatg tattgaaaaa      3360
     taaggcagat tatattcaat aacaataaaa agttattaat aaataaaaat gtgaaaatta      3420
     aaataaatat gttcgaaatg aatactatat tgtaagttta aaatttaaat ttgtaataat      3480
     ataattataa aaagtattat ttctagacgt aaaagtatta tttcacgtta cattatatcg      3540
     tatcatttct acacacttac atttaattgt aaatgtaatc ctacaatctt atagcacaag      3600
     aagtttattt gcacgttgca aatttaaaaa tgcgcgtaaa actgttacat gagtcttcaa      3660
     attagcaatg atagttgtaa ttttacgcat aacttctttt taaaatgtat aatagaagaa      3720
     ttactacgca atcataatta aataattaat taaatcaata attaaataat cattaaataa      3780
     ttaattatag attacttaat gattatctaa ttattgattt aattgattat ttaattatgg      3840
     ttgcgtaata attcttctat tatacattta aaaaaaagtt atatataaaa ttacaactgt      3900
     cattgtgggt ttgaagattc attgtaatag ttttccgcgc atttataaat ttgtagtgtt      3960
     gaaataaagt taacttcttg tgtcgtaagt aagattgtag aattacattt acaattaaaa      4020
     gtatgtgtat aaaaatgata taattgaacg tgaaataacg tataaaaata atacttttta      4080
     taatcacatt attgcaaatt caaattttaa atttacaaca taatattcat ttcgaaaata      4140
     cttattttaa taattatttt cacattttta tttataataa ctttttatta ttattgaata      4200
     taatcttcct tattttttaa tacagtttcg cgaattcatt actttattaa ataattttta      4260
     atatcggctg cttgagatag ctgtaagaca ttcaatgtcc aaacgcaatg atagttataa      4320
     ttttacacat aacttttttt aaaatatata acaaaagaat tattacgcga tatttaaaca      4380
     attaataatc atatttaaat aatcaattaa ataaataaat aatcattaaa taatcaataa      4440
     ttaatcagaa cgagagggaa agaaaggaaa gcgcgacgta tagagacacc gcggtctctc      4500
     actcgcacta gtgtcgagtg tgtgagacag cgaagggaca ccgaaatcgg tatcacgtcc      4560
     gattatgctt tctctctcga tcgcgcgtct tgcgttaagg atgcaacatc gaattgcccc      4620
     cactattttt tctctccgct ccgcgatctc cttcgcgctc cgcggagaca cggacgtacg      4680
     cgcttcgtgt gtatgtgtag cggccgcgcg ccgagcgcac agacaccatt cccgccggtg      4740
     cgtgtacatt ggacagtggc gcctccgtga cagaaattgc aaccgtagat gagaaccggg      4800
     cgacgacgat aatgacgacg tttcttaaag taaaaatttc caaatcggac tttgcgtagc      4860
     aatatctccg ctcgtggggc acgtagcaga aaaataaaaa tacttttatt atgcaagtcg      4920
     aaccacaagc tatcgatcaa gcctacttag aacttgatcg gtttagccgt tattgagatc      4980
     cgataatttc ggatgctcgc atctcgccga ctcgcgtaaa gtcacacggc agtgttctcg      5040
     gttgacttga cacccgagac actaccgtgt ctcctg                                5076
//
ID   Mariner-11_RPr repbase;    DNA;    INV; 2279 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   25-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2279
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3258-3258 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           383..1975
FT                 /product="Mariner-11_RPr_1p"
FT                 /translation="MASKRIKITLELKRKIIEKRENGVSVADLARTYNRST
FT                 STICTILKNKDKIKQIDASKGVTRMSTQRLRILDDLERLLLIWINEKQLQG
FT                 DTITEQIICQKAKLIFTDLRTKTPGSSTDEKEFKASRGWFEKFKKRTGIHS
FT                 VMRHGEAASSDKKAAENYVSDFKKLLISEGYLPQQIFNCDETGLFWKKMPK
FT                 RTYITEEEKALPGHKPMKDRLTLLFCANASGDLKIKPLLVYHSETPRAFKK
FT                 CNIHKNKLNVMWKANNKAWVTRDIFVEWINEVFGPSVKKYLLEMNLPLHAL
FT                 LVLDNAPAHPPSLQNDLLDEFQFIKIQYLPPNTTPLLQPMDQQVISNFKKL
FT                 YTKGLFEHCFEVTEETNLTLREFWKYHFHIVTSLKIIDKAWDGVTKKTLIS
FT                 AWKKLWPEILVESGFEAIESEPVESLDNEIVSLATDMGLTVDKDDIDELVA
FT                 DHSQELSTEELVELQHISQQELVEENLLDKEEKISEEQQSSSAIREMLKAW
FT                 ETVATHVENYHPNKAVAMRSINLFNDNAVSLLKTF"
XX
SQ   Sequence 2279 BP; 774 A; 398 C; 465 G; 642 T; 0 other;
     cagtggaacc tcgcataacg agcacctcgc ttaacgagta attcgcataa cgagtaaaac        60
     aaattgattc ttatagcgag cgatgtttcg cataacgata gttttctaat gacatttcgc       120
     tgacgtgttt tcctcagcca gtaagcggcc ggtgggcgtg accagacgga gtggggcagt       180
     cgcagttaaa aggggcagac acagctggag aagtcagttt ttgaagtcag tttttagtga       240
     gtttttagta gagtttttag tgagttttta gtctttgaga gacggtttgg aagtgatagt       300
     tcgcgagaga gtcagtgtta ctgagtgctt cagaaaaaac tttacaaaat tattgtgttt       360
     attttgttat ccctctaaca aaatggcttc gaaaagaatt aaaataacgt tagaattgaa       420
     acgtaaaatc attgagaaac gagaaaatgg tgtaagtgtg gctgatctag cacgcaccta       480
     caatcgatca acatcaacga tttgcactat tctcaagaat aaagacaaaa tcaaacagat       540
     agatgcatca aagggcgtta caagaatgtc tacgcagcgg ttacgtatcc ttgatgattt       600
     ggaaagatta cttctcattt ggataaatga aaaacaattg caaggcgaca ctataaccga       660
     acaaataatc tgtcagaagg caaaactaat tttcactgat ctccgtacga aaactccagg       720
     atcgtcaaca gacgaaaaag aatttaaagc aagccgtggg tggtttgaaa aattcaaaaa       780
     aagaaccggc attcacagcg ttatgaggca cggtgaagca gcaagttccg ataagaaggc       840
     agctgagaac tacgtcagcg acttcaaaaa acttttgatt tccgagggtt acttgccaca       900
     acaaattttt aactgtgacg agacaggtct cttttggaag aaaatgccca agcgaaccta       960
     cataacagaa gaagaaaaag cattacccgg ccacaagccc atgaaagatc gcctcacgtt      1020
     gctgttttgt gctaatgcaa gcggtgactt gaaaattaaa ccattgctgg tgtatcattc      1080
     ggaaactcca cgagccttta agaaatgcaa catccacaag aacaaactaa atgtaatgtg      1140
     gaaagccaat aacaaggctt gggtgacacg tgacattttt gttgaatgga taaatgaagt      1200
     gtttggtcct tctgtgaaaa aatatttatt ggagatgaat ctgccgctcc atgcgttgct      1260
     tgtactggac aatgctcccg ctcatcctcc aagtctacaa aatgatcttc ttgacgaatt      1320
     tcaatttatc aaaattcaat atctgcctcc taatactaca ccgttacttc agcctatgga      1380
     tcaacaagta atttccaact ttaagaaact gtacactaaa ggtctcttcg aacattgttt      1440
     tgaggtgact gaagagacaa accttacttt gcgagaattt tggaaatacc acttccatat      1500
     tgttacatcc ctcaagataa tcgacaaggc gtgggacggg gttaccaaaa aaactctaat      1560
     ttctgcatgg aagaagctct ggcctgaaat cctcgtcgaa tctggttttg aggcgattga      1620
     atccgaacct gtggaatctc tagataatga aattgtgtct ttggccacgg atatgggatt      1680
     gacagttgat aaagatgata ttgatgagct tgtagcagat catagtcaag agctatccac      1740
     agaggaactt gttgagttgc aacacatttc acaacaagaa ttggtggaag agaatttatt      1800
     agacaaagag gagaaaatat cagaggaaca acaatcttcc agcgcaataa gagaaatgtt      1860
     gaaagcatgg gaaactgttg caacacacgt agaaaactat cacccgaata aggctgtggc      1920
     tatgcgatct ataaatttat ttaatgataa tgctgtgtca cttttgaaga cattttgaag      1980
     cgacggcaga aacaaggaac attggacaaa tttataatta aaaaggatta attatgaatg      2040
     tacatattta tctcaattaa tatatgtaat ttatattata ttacatcata tgtacatatg      2100
     tatataattt tttcgaaata aatgttataa aaaaaaattt tatcaatatt ttttttgcat      2160
     ggaaccaatt atcccctttt attttaattt aaatgaaaaa aattgtttcg cttaacgagt      2220
     atttcgctta acgagtaagg ttctggaacg aattatgctc gttaagcgag gttcgactg       2279
//
ID   Mariner-11_SIn repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-11_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1293
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 327-327 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 22bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-11_SIn_1p"
FT                 /translation="MSDFVPNNRHLREVLIFLFHSKKTAAEAHRELQKVYG
FT                 DAALSETTCRDWFRRFKDGDFDVDDRPREGRPKTFEDAELEALLDEDPCQT
FT                 QEQLASALGVTRQAISKRLHALGMIQKQGTWVPYDLKPRDVERRFFTCEQL
FT                 LQRQKRKGFLHRIVTGDEKWIHYSNPKKRKSWGLPGHASTSSARPNIHAAK
FT                 VMLCIWWDQVGVIYYELLKPNETITGERYRLQLMRLSRALREKRPQYEQRH
FT                 DKVILLHDNARPHVAKPVKTYVETLKWEVLPHPPYSPDIAPSDYYLFRSMA
FT                 HGLADQQFRSYEDIKKWLDSWIASKDEHFYRNGIRALPERWAKVVASDGQY
FT                 FE"
XX
SQ   Sequence 1293 BP; 367 A; 279 C; 313 G; 334 T; 0 other;
     tattaggtgc gcaactaagt tcccgctgtt tgtcaataga tggctccagc agtaagtgct        60
     ggtcgattta gacatatcca aaacgtcatg aaccaagctt agacatatgg taaacaaacc       120
     gcgttgacac gttagtgatt ttgttttggc gtcatatact tttgattgtg tgaaaatgtc       180
     tgattttgtg ccaaataatc gtcatttgcg ggaagtgttg attttcttat ttcattcgaa       240
     gaaaacggcg gctgaagcgc atcgagagct ccaaaaagtt tacggagatg ctgctctaag       300
     tgaaacaacg tgccgtgatt ggttccgtcg cttcaaagac ggtgatttcg atgttgacga       360
     ccgtccgcgt gaaggaaggc caaaaacatt cgaagacgct gaattggagg cattgctcga       420
     tgaggatccg tgccaaacgc aagaacagct tgcttcagca ttaggagtta cccgccaagc       480
     catttccaag cgattgcatg cgttgggaat gattcaaaag caaggaactt gggttcctta       540
     tgatttgaag ccaagggacg ttgagcgtcg ttttttcacc tgtgaacaac tgctccagcg       600
     gcaaaaaagg aagggttttc ttcatcgcat cgtgacgggt gatgaaaaat ggattcatta       660
     cagcaaccca aagaaaagaa agtcatgggg actgcccggt catgcttcta cgtcgtcggc       720
     tcggccgaat atccacgctg cgaaggttat gctgtgtatt tggtgggacc aggtcggtgt       780
     tatttattat gagctgttga aaccgaacga aaccatcact ggggaacggt atcgacttca       840
     attgatgcga ctgagccgag cactgcgcga aaaacggcca caatacgagc agaggcacga       900
     caaagtgatt ctactgcatg acaacgctcg gcctcatgtt gccaaacccg ttaaaaccta       960
     cgtggaaacg ctcaaatggg aagtcctacc ccacccgcca tattccccag atattgcgcc      1020
     gtccgattat tacttgttcc gttcgatggc acatggtctg gctgatcagc agttccgctc      1080
     atatgaagac atcaaaaaat ggcttgattc gtggatagcc tcaaaagacg aacactttta      1140
     tcgtaacggt attcgagctc tgccagaaag atgggcaaaa gttgtagcta gcgatgggca      1200
     atactttgaa tgattcattt gtaaccattt tttcacaata aagttgcatt ttcataaaaa      1260
     aaaaacagcg agaacttagt tgcgcaccta ata                                   1293
//
ID   Mariner-12_ACe repbase;    DNA;    INV; 904 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-12_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-904
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 522-522 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 87% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..707
FT                 /product="Mariner-12_ACe_1p"
FT                 /translation="MRSSDFIMEKKVEQRVCLKFCVANEISCANALKMLQK
FT                 AYGDFSLSKTQAYEWYKLFKDGREVVEDLPRSGRPLTSNTDENVDKVKKIV
FT                 LANHRVSEREIASTLSISNGSVHHILEGQCVDFVHDNASSHTLSLVCDFLT
FT                 KHATNTIAHAVFIRHGIYVTFSCFQDSNCHYRKSVLIRLIP"
XX
SQ   Sequence 904 BP; 271 A; 152 C; 190 G; 289 T; 2 other;
     tcctctgctc aaaaagtacc cggaatttct catttgaaag acacgtgtta atagtgatat        60
     gtcaaatttt tttttcacta aattggcaca atgtccttga tgctgagttt gagcgcgatc       120
     tgtcatttag tttgtttacg gcagctgttt atatcagtct atcttagatg cgttcatcgg       180
     attttataat ggaaaaaaaa gttgagcaaa gagtgtgttt gaaattttgt gttgctaacg       240
     aaatttcttg tgccaacgca ttaaaaatgt tacaaaaagc ctacggggac ttttctctct       300
     cgaaaacaca agcgtatgag tggtataaat tgtttaaaga tggccgtgaa gtcgtagaag       360
     acttgccgcg ttctgggcgt ccattgacat caaatacgga cgaaaacgtc gataaagtga       420
     agaaaattgt gcttgcaaat catcgtgtga gtgaaagaga gattgcttca acccttagca       480
     tctctaatgg ttcggttcat cacattttgg aaggacaatg cgtggatttt gttcatgata       540
     acgcatcgtc gcacacattg tctcttgtat gcgacttttt gaccaaacat gcaacaaata       600
     ccatcgccca tgcagtattc atcagacatg gcatctatgt gactttttct tgtttccaag       660
     attcaaattg ccactacagg aaaagcgttt tgattcgatt gattccataa aagaaaattc       720
     gacgaaggag ctaaaggcca tatcttcagg agcctatgaa aagtgctacg aagagtgggt       780
     taatcgctgg cacatgtgta tagtctcgaa tgatgattat tttgaagggg ataaaataaa       840
     tttattttaa aatttwwaat tttgcgtttt atttaaaaat tccgggtact ttttgagcag       900
     aggg                                                                    904
//
ID   Mariner-12_AEc repbase;    DNA;    INV; 1305 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1305
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 555-555 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           44..1195
FT                 /product="Mariner-12_AEc_1p"
FT                 /translation="MATPNELQTRNFDSLLVIPSAARNNMFSLEERFEILK
FT                 TYFQSQCCVAETVRILKRNMGRDRAPTEGAIRKLVRKVREKGMLVDDRSGP
FT                 RARTVRTPENIEAVAQSVRQNPTTSTRRRSQQLSISRTSLRRILHKDLGLF
FT                 AYKIQMTQELKANDHPLRYQFAVWAIDQLNNDVDFGRKIIFSDEAHFHLGG
FT                 YVNKQNCRIWGSEQPHTIVERPMHPPRVTVWCGFWSGGIIGPFFFENDAGN
FT                 AVTVNGERYRAMLTDFLWPQIDTMNVDDLWFQQDGATCHTSRLTIDLLRTK
FT                 FNDRIISRSGDVNWPARSCDLTPLDFFLWGAVKDRCYADNPETIPALKNNI
FT                 TTVLSEIGAEVVQNVINNWGDRMAYCKASRGSHMNEIVFHS"
XX
SQ   Sequence 1305 BP; 382 A; 284 C; 309 G; 330 T; 0 other;
     tacagggtgg gccatctatt ggtacgtttt tgaatttcgt cgtatggcaa caccgaacga        60
     gctacagacc cgaaattttg acagtttatt agtcataccg tccgcggcac gaaacaacat       120
     gttttctctt gaagagcgtt ttgaaatttt aaaaacttat tttcaaagtc agtgctgtgt       180
     cgccgaaact gtacgaattt tgaaaagaaa tatgggtcgt gatagagcac ccaccgaagg       240
     agctatacgc aaattggtga ggaaagttcg tgagaaaggg atgttagtgg atgacagaag       300
     tggtcccaga gctcggacag tgcgcacacc cgagaatatt gaggctgtgg cccaaagtgt       360
     gagacagaat ccgacgactt caactcgacg ccgatcgcag caactgagca ttagtcgcac       420
     cagcctgagg agaatactgc acaaagacct cggattattc gcctacaaga tccagatgac       480
     tcaggagttg aaagcaaatg accatccgct tcgatatcag tttgctgtgt gggctataga       540
     ccagctcaat aatgacgtcg attttggtcg aaaaatcatc ttttcggacg aagctcattt       600
     ccatctcggc ggatatgtga acaagcaaaa ttgccggatt tggggctcgg aacagccaca       660
     cacaatcgta gagagaccaa tgcatcctcc aagagtcaca gtttggtgtg gattttggag       720
     tggtggcata attggcccat ttttcttcga aaatgatgct ggaaacgccg ttaccgtcaa       780
     tggcgaacgc tacagagcca tgttgaccga ctttttatgg cctcaaatcg acactatgaa       840
     tgtggacgac ctttggtttc aacaagatgg cgccacatgc catacaagcc gacttaccat       900
     cgaccttctg cgcaccaagt tcaacgaccg cataatcagc cgttcaggag atgtcaattg       960
     gcctgcgcgt agctgcgatt tgacaccgct ggactttttc ctgtggggtg ccgttaaaga      1020
     ccgatgttat gcggataatc cagagacaat tccagctttg aaaaacaata ttacgactgt      1080
     tttgagtgaa attggcgccg aggtagtcca aaatgtcatt aataattggg gtgaccgaat      1140
     ggcatactgt aaggccagta gagggagcca catgaacgaa atcgtttttc attcttgacg      1200
     cggatacttt tagcttcaca acaaaaaaaa aattaataaa aaatatcaat gtatgctcat      1260
     ttgatcgcat ttttaaaaac gtaccaatag atggcccacc ctgta                      1305
//
ID   Mariner-12_BM repbase;    DNA;    INV; 1651 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.08, Created)
DT   19-OCT-2011 (Rel. 17.08, Last updated, Version 3)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-12_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1651
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 12(8), 1372-1372 (2012).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           334..1371
FT                 /product="Mariner-12_BM_1p"
FT                 /translation="MDTTPEKAAQVVALIEAGQNQSAVARQLNISRYSVRR
FT                 VYQRYRETGGFERRRGSGRARATTQRDNRFLVTTALRNRRLTAVELAQQLQ
FT                 QVREVVVSRWTVRRRLAEGGLTAHRPANGPKLTPAHRRARFRFAQEHVNWT
FT                 ADQWKAVLFSDESRMCLHDNDGRGRVYRRRSERFSQCCITERVAYGGGSCM
FT                 FWGGISLERKTELVFIVGANIRRQTRGLTSQRYIEEVLQEHVVPFGRLIGS
FT                 NFLFMHDNARPHTAAIVRQYLQEVNVPVMEWPARSPDLNPIEHLWDELKRK
FT                 IRGRNSAPANLQELQNALKEEWDAMPQDFIRNLIESMGNRCEAVIRARGGN
FT                 TCY"
XX
SQ   Sequence 1651 BP; 512 A; 325 C; 363 G; 451 T; 0 other;
     cactcgggtg caatgaaatc gcacatctgt acattttttg aaaaatatta tttacttctt        60
     tttatttaaa aaaatacata tattttttaa cataaggtta aaggatagtt caatacctat       120
     tcaatgatac cacataagac atgataagtt tacctgcctg ctgaaacaaa acgacaacag       180
     caaactccaa aaattgctcc ctcaactcac tgcagtttgc aagaccaact gcaggtataa       240
     aaaggcatgt tttgtgtaaa acgtcatcag ttgcaagcca acgcttaacc tgataagacc       300
     tctagtgact ccaattgcat ttgtctgaaa aagatggata ctactccgga aaaagccgct       360
     caagtcgtcg ctctaattga agcgggccag aaccagagtg ctgtagctcg acaactgaat       420
     atcagccgat attcagttcg tcgtgtgtac cagcgctatc gggagactgg tggcttcgaa       480
     aggcgacgag gatctggtcg agcaagagct acaacacagc gcgacaacag atttcttgta       540
     acgacagcgt tgcgaaatcg tcgtttgact gccgttgaac ttgcacagca gcttcaacag       600
     gtgcgtgaag tggtagtcag caggtggaca gtcagaagga gacttgccga aggtggtttg       660
     actgcgcata ggccagcaaa tggccctaaa ttgacgccag ctcaccgccg ggctcgtttt       720
     cgatttgcac aagaacacgt caactggaca gccgaccagt ggaaagcagt cctgttctca       780
     gacgagtcca gaatgtgtct tcatgataat gatggacgtg gaagggtcta cagaaggcgc       840
     tcagagcgat tttcccaatg ttgcatcaca gaacgtgtag catacggcgg tggttcgtgt       900
     atgttctggg gaggtatctc actcgaacga aaaacagagc ttgtcttcat cgttggggcc       960
     aatattaggc gacaaacaag aggtctaaca tctcaacgat acatagagga agttctacaa      1020
     gaacatgtcg taccatttgg ccgtttaatt ggaagtaact tcctttttat gcatgacaat      1080
     gcaagacctc ataccgctgc gatagtgaga caatacttac aagaagtaaa tgtacccgtg      1140
     atggagtggc cagctcggag cccggacctt aatccgattg aacacttgtg ggacgaatta      1200
     aaaagaaaaa ttagaggtcg aaatagtgct ccagctaatc tccaggagct acaaaatgcg      1260
     ctcaaagagg aatgggacgc catgccacaa gactttatca gaaacttgat agagtcgatg      1320
     gggaatcggt gtgaagctgt aattcgggca agagggggca atacttgtta ctaataaatg      1380
     atttttcagt attttttgtg tttttttttt attaatcccc aaattttaaa cggtttagtt      1440
     gagtaatcat tttgtaataa agattaaatt gttgttgtat tttattttcc tcaagaaagt      1500
     aaccttatct ccacttatat ggtatcattg aataggtatt gaactaacct ttaaccctat      1560
     gttaaaaaat atatgtattt ttttaaatta aaagaagtaa ataatatttt tcaaaaaatg      1620
     tacagatgtg cgatttcatt gcacccgagt g                                     1651
//
ID   Mariner-12_CFl repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-12_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 816-816 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1225
FT                 /product="Mariner-12_CFl_1p"
FT                 /translation="MVSKVLDIVMSDRRLKLREIVEIVGISKERIFHILHE
FT                 ILGMRKLTSRWVPRLLTVENKHVRMTISKQCLDLFKRNPREFFRRYVTVDE
FT                 TWIHHYTPETKQQSKQWTLPGEPAPKKAKSLPSAGKVMATIFWDSKGIIHI
FT                 DYLEKGKTITGKYYADLLDRFNKELKEKRPHLAKKKVLFHHDNAPSHSSAV
FT                 ATAKLIELRYELLPHPPYSPDLAPCDFFLFPNLKIWLGGKKFASNEEVIAA
FT                 TNAYFTEFQPTYFLDGLKKLEHQWTKCIDLKGDYIEK"
XX
SQ   Sequence 1293 BP; 415 A; 264 C; 280 G; 334 T; 0 other;
     cgagggtaac ttgaaaagtt tcttaagtca cacagagata gcacgcgtat cgcaaaaaag        60
     atgcaatgac cgaaaagtgc gacatctttt atggttgctg taaaattttc agacaattac       120
     gtcaattcgt cacttagttg ggagcagtta aacaaagcaa gtcaaacatt ttttcaacaa       180
     tggataaaaa ggagtttcgt gcagtgataa aacacttttt ttgaaaggga aaacagctac       240
     gcagattcaa gcagagttgc aggaggttca tggcacatct actccttcat taccaaccat       300
     cagtttttgg gtaaacgaat ttaaacgtgg tcgtaccaac accgatgatg aaccacgcag       360
     tggacgcccg aaaaccgcta ccaatgaaga aatggtcagt aaagtgctcg atattgttat       420
     gagtgaccgc cgtttgaagt tgcgtgagat agtagaaata gtaggcatct caaaagaacg       480
     gatatttcat atcctgcatg aaatattggg catgagaaag ctgacgtcgc gatgggtgcc       540
     gcgtttgctt acggtggaga ataaacacgt gcgtatgacc atctctaagc agtgtttgga       600
     tttgtttaag aggaatccac gagaattttt tcgtcgatat gtgaccgtgg acgaaacatg       660
     gattcatcac tacacacccg aaacaaaaca acagtcgaag caatggactt tgcctggtga       720
     accggccccg aagaaagcca aatcacttcc atcggctggg aaggtcatgg ccactatttt       780
     ttgggattct aaaggcatta tccacatcga ctacttagaa aagggaaaaa cgattacggg       840
     aaaatactac gccgacttac tggaccgttt caacaaagaa ttgaaggaaa aacgccctca       900
     tttggccaag aaaaaagtgt tgttccacca cgataatgca ccatcccatt catccgcagt       960
     tgcaaccgca aaattgatcg aattacgata cgaattgctg ccccatccac cgtactctcc      1020
     agatttggcc ccatgcgact tctttttgtt cccaaatctg aagatttggc tcggaggaaa      1080
     gaaattcgcg tcgaatgagg aagtcatcgc cgctacgaac gcctatttta cagagtttca      1140
     gccaacgtac tttttggatg gtttgaaaaa attggagcat cagtggacta agtgtattga      1200
     cttaaaagga gattatattg aaaaataaaa taaaactttt ccgaaaaaat gttgttttct      1260
     ttccgactta agaaactttt caagttgccc tcg                                   1293
//
ID   Mariner-12_DAn repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1646
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 268-268 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 28-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..1323
FT                 /product="Mariner-12_DAn_1p"
FT                 /translation="MGKGTVLSLEEKSKIEAFSESGLSLHKIAEKMGRHRK
FT                 TIASFLKNKQGYGKNMKGGNNRVISEADIRSIVRHASNSHDSSTKIKEKSG
FT                 VEASKSTVLRVIKKAEHLKRLKLKKKPQLNKLRKEMRLNFARSHMTWSKEW
FT                 RFVVFSDEKKFNLEGPDGYNYYFHDMRKEEHILDRLHSRVGGVMVWGAISY
FT                 YGTYELQFLTPKMNAMAYNNLLKTAFPHFQNCFGNLKWRFQHDNAPIHTAR
FT                 SVKSWIQGQNVDVLAWPPYSPDLNIIENVWGWLSRKVYESGKQYSTKLELI
FT                 DGIKEAWSSISLQYIEKLYESLPSRICEVLENGGGTTHY"
XX
SQ   Sequence 1646 BP; 546 A; 278 C; 319 G; 503 T; 0 other;
     cactgcgcgt catcagatta gcgcccccct tttggtttta ctttattgca tctatctctg        60
     tttctattgc acgcaacttc aaaatttttg ttgttgcttt taaaatgcac aaattgtcgc       120
     tttctgacag aaataccgtt aggtgagaga atccgttatc tattttttct tcttttgttt       180
     tactttctct gcaaaagctt gcactgattt tgcgtcatca gattagcgcc tgtaaattca       240
     aatttagtta tctcgcgtaa tttttgacgt acagttgtga aattttttgt gctgattaat       300
     tgaataattg tttataaact gagaatcaaa atgggtaaag gaactgtcct atctttagaa       360
     gaaaagtcta agatcgaagc ctttagtgaa agtggcttat ctttacataa aattgctgaa       420
     aaaatgggaa ggcatagaaa aactatagcc agttttctta aaaataaaca aggctatggt       480
     aaaaatatga aaggcggtaa caacagagtt atttccgaag cagacattcg gtctatagtt       540
     agacatgcgt ctaattcaca cgactcttct acaaaaatta aagaaaaaag cggtgtggaa       600
     gctagcaagt ctacggtatt acgagtcata aaaaaagcag aacacttgaa aagactaaaa       660
     ctaaaaaaaa aaccacaact aaataagtta cgaaaggaaa tgcgcctaaa ttttgctcgc       720
     tcgcatatga catggtcgaa ggagtggcgc tttgtagtct tttccgatga aaagaaattt       780
     aatttagaag gccctgacgg ctataattat tatttccacg acatgcgtaa agaagagcat       840
     attttagatc gtttacatag ccgggtaggt ggcgtaatgg tatggggagc catatcctat       900
     tatggcacct atgagttaca atttctcacc ccgaaaatga acgccatggc gtataataat       960
     cttttaaaaa cggctttccc acatttccaa aattgttttg gaaatcttaa atggcgtttt      1020
     caacacgaca acgctccaat ccacactgcc cgatctgtaa aatcgtggat acagggccaa      1080
     aacgttgatg tcctggcgtg gccgccgtac tctccggact taaatataat agagaacgtg      1140
     tggggatggc tctcgagaaa agtttacgag tctggaaagc agtatagtac aaaattggag      1200
     ctcatcgacg ggattaaaga agcttggtct tccatatcat tacaatacat tgagaaattg      1260
     tacgagtcac ttcctagcag gatctgtgag gtcctggaaa atgggggcgg gaccacccat      1320
     tattaatttg attaaaaaat aagtaaataa taagattaag cataaaacac tactagttgt      1380
     taagcattaa gtgaaaattc attaaattta agcagggggc gctaatctga tgaagcaaaa      1440
     ttaaattcat atatttggta tacattttct tttcaaataa ataaaatatt attgttatac      1500
     ttatcattat gtaccttatc ttattttgaa gaatattatt aaaagtatcg tcaaaaaaaa      1560
     gttttatggc ttagccttga tagtttggat aatattggac attacccgag aatgatcagg      1620
     gggcgctaat ctgatgacgc gcagtg                                           1646
//
ID   Mariner-12_DBp repbase;    DNA;    INV; 1632 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1632
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 595-595 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. ~300-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1632 BP; 530 A; 325 C; 331 G; 439 T; 7 other;
     cagtggtggc cacaagttta gcacactatg catcgccaaa ctttaatgaa agataatttc        60
     gattctgcaa ggacttgatc cttgatcctt tcacgtacgg ctaggttgtc atattgggag       120
     tatctatggt tgtttctatc gtcctagctt tttctgtctt cctgccgcag gaccttaagt       180
     gcagcaaccc caaaaaaacg ctggacacaa gtttagcaca ccaaaacaga tcgctattaa       240
     tgttcgtttt tcagttgaaa gtttaacaat ttaagatcaa aagtataaat agcagtctta       300
     aactatgaaa aaaaatcaaa tagctacaat atacaatggc maaggggtcc tggcgcactg       360
     aagccaagcg cgaggttata attttgatga agtcatmtgg aaagtcgatt tcttaaattt       420
     ccaaagagtt gaattgctcc cggaaaatga tttacaatgc tcttagtcat tacaaaaaca       480
     acaacacgtt taaagacgta aaacacaagc ccaaacagcg gaaaactacc gccaaagaag       540
     attgtcttag tggccgaatg tctttttctg atccttttaa gacctccagc atcatccaaa       600
     ggcaagtgtc ctcaaaattt ggaatttaag tgtcctccag gactattaga agaagactaa       660
     atgaaaaaat ttacgtgggt gcgtaacata acatacgcca catctgtcaa aaaaaaatta       720
     aaggctagat tagcgttcgc caaggagcac ctcaagaaac ctctaatttt ttggaaaaat       780
     atattgtgga gtgacgaatc catgtttccc gggctgggat ccgatggtaa gcagtatgtt       840
     tggcgacccc ccaacttgca acacaaccca cggtatactg tgaagactat caakcatggc       900
     ggtggaaatg tcatggattg ggcaggcttt tcgtggcacg gcgtgggtcc tatccacaaa       960
     attgatactc ggatggacca gcatatgtat aaggacataa ttacaaacat tatgataccc      1020
     tttgccgagg aaaatttacc gttgaattgg cgatttaatg catgacaacg atcctaacca      1080
     cacttcacgt ttagkgaaaa gttggcttca ggataataaa atagaggtcc taaaatgtcc      1140
     agctcaatct ccagacctaa atccaattga gaatttgtgg ggcaatgtcg agcagcacat      1200
     tcgggctgtt aaacccatga attttgatga tttatggact gaaatccaaa aggcccggta      1260
     tgcaattccc caacgaagat gtgccgtctt ggtggaaggc ctttcaagaa gatgtgcagc      1320
     agtaattaag aatacaggat ataccaccaa atactagtta tattttttca aaattgtttt      1380
     cccataatga aataaaaata ttttttasta aktgtgctaa acttgtgtcc agcgtttttt      1440
     tggggttgct gcacttaagg tcctgcggca ggaagacaga aaaagctagg acgatagaaa      1500
     caaccataga tactcccaat atgacaacct agccgtacgt gaaaggatca aggatcaagt      1560
     ccttgcagaa tcgaaattat ctttcattaa agtttggcga wgcatagtgt gctaaacttg      1620
     tggccaccac tg                                                          1632
//
ID   Mariner-12_DEl repbase;    DNA;    INV; 1653 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1653
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4033-4033 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           377..1198
FT                 /product="Mariner-12_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MDQKRKETNAAQRKIVLHLHSEGKSYGKIAQIMELSR
FT                 FTIRNIVQRFKGAASLENAPRSGRPRALTDRESNKVVRKVKLDPKISSSQI
FT                 AAEVKTEFGKEIHPITVRRTLHKANYHCRTARRKPLISEVNQKKRLAYAKE
FT                 HLTKPIVYWDQVIFSDESKFNIFRSDGRQQVWRKPNTELDKKNLAPTVKHG
FT                 GGGVMVWGCMSSAGVGELVFIEGIMDKVYYLNILKENLKKSALKLNMPSSS
FT                 HLCKTMIRSILPKMCVCGSLKHRTFVATSTTVT"
XX
SQ   Sequence 1653 BP; 545 A; 313 C; 328 G; 451 T; 16 other;
     cagtgccgaa ctaaagtgat ggcacagttg caaatgtcaa cttcaaatgt tattcccagg        60
     cgtattcagc atttttatga tacagttttt tttaatatat ttaaattaaa catttgttta       120
     ttcaaaggca catttgtttt ggtatttttt tggaacgtac ttaaaactat ttaagcttaa       180
     acaaaaaagg aacttatttc gtgaaacaaa attgcacagt tccttcttat ttgattcttt       240
     ttatcgtaag cttaatttgg tccactgttc atgaaattta taacggaact tctccttaac       300
     tacatggcgc caaaaatttt gcaacaaagc gacgtttttc ccaagttttc ttgccatttg       360
     cctaaattta tacaaaatgg accaaaagcg caaggaaact aatgcagctc agcgaaaaat       420
     tgtccttcac ctgcacagtg aaggcaaatc ttatggcaaa atagcccaga ttatggaact       480
     wagcagattc acaatcagaa acatcgtgca gcgctttaag ggagcagcaa gtttggagaa       540
     cgctcccaga tcaggacgcc cgagggcctt aactgaccgt gaatctaaca aggtggtccg       600
     aaaagttaag ctggacccga aaatatcttc ttcccagatt gccgctgagg ttaaaactga       660
     gtttgggaag gaaattcatc ccataacagt tagaaggacc cttcacaagg ccaattacca       720
     ttgccgtact gctagaagaa agccattgat ctctgaggtc aatcaaaaaa agcgtttagc       780
     ctatgccaaa gagcacttga ctaagccaat tgtatattgg gatcaggtca tcttctctga       840
     tgaaagcaaa tttaatatat ttcgatccga tggccgtcag caagtgtgga gaaagcctaa       900
     cacagaatta gataaaaaga acttggcacc tacagtaaaa cacggcggcg gaggagtcat       960
     ggtgtgggga tgcatgtcat cggcgggtgt tggagagctt gtcttcatcg agggaatcat      1020
     ggacaaggta tactacctca acattctaaa ggaaaaccta aaaaaaagtg ccctaaagct      1080
     gaatatgccg agttcttcac atttatgcaa gacaatgatc cgaagcatac tgccaaagat      1140
     gtgcgtatgt ggctcgctta aacaccgcac atttgttgcc acatccacca cagtcacctg      1200
     acctgaatcc gatcgagcac ctttgggatg aactggatcg gcggatgaga aaacacgaaa      1260
     tgaccttaag aaggccttat tggaggaatg gcgaaatatt tcwgatkaga ccacaaaaaa      1320
     gttkgctcat tccatgccta ggcgtcttga agatgttata aagcaaamag gactgccaac      1380
     aaaatattaa tttttatgta aaacgkggaa aaaaaacgat ttttggtgaa gtgtgccaag      1440
     acttttgttt cacgaaataa gttmkttttt tgtttaagmt taaatagttt taagtacgtt      1500
     mcaagaaaat accwaaacaa atgtgccttt gaataaacaa atgtttaatt taaatatatk      1560
     aaaaaaagmt gtatcataaa aatgctgaac acgcctggga atawcatttg aagttgacgt      1620
     ttgcaactgt gccawcactt tagtkcggca ctg                                   1653
//
ID   Mariner-12_DF repbase;    DNA;    INV; 1662 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-12_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1662
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 779-779 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~300-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1389
FT                 /product="Mariner-12_DF_1p"
FT                 /note="transposase."
FT                 /translation="MPRKELTLEERRIILNLHVKGQKSYSEISKIVSRPRS
FT                 TIQHVIGRFKNEGRIENNSRNGRPPKLTVRDKRLIKHIIDKDPFQSAVKIS
FT                 SAIATTLKKDVHPETIRRTIKEFGFLSCTPRKKPHVSKKNRLKRLEFAKAY
FT                 RNHSEEFWQQVIFSDESKYNIFRSDGRYKVWRKPGDAYRPKNTIKTVKHNG
FT                 GGLMVWGCMGFAGVGNLEIIDGIMDHKKYIEILKRNLKQSADHLGIGSSFH
FT                 FYQDNDPKHTAINTRLWLIYNVPHLLKPPPQSPDLNPIEHLWNKLEEHLRG
FT                 RTITSRSDLKVALLEEWAKIDHAYIKTLVSSMPRRLQEVIKMKGYPTKY"
XX
SQ   Sequence 1662 BP; 577 A; 275 C; 302 G; 508 T; 0 other;
     cagtgtgcca caaaagtgat gatacagcag ctatttttta ctatatgtgt gaattccttc        60
     attattcaac ggatttaaat aaaacaaaaa atcacttcaa gtaaaatatg tatttatgaa       120
     tagtatttaa gaacaaaaat aacgaaatct ccaatagttt ctatacaaaa aacaaaaaac       180
     caaaattatc cctcatttaa tttccacaaa agtcatgata cacacattag tgttaataca       240
     gttcgattaa ttgcagctga tctgtttaag attttgtaac gggacttttt cgtttatgct       300
     ttgcatataa ttcttttact tgtggtgaaa ttcatttaaa gtcatagcgt agtttaagtt       360
     gtgaaaatgc ctcgaaagga gcttactttg gaagagcgaa gaattatttt gaatttacac       420
     gttaaaggac aaaagtccta ttcagaaatt tcaaaaatag tttccagacc ccgctcaaca       480
     attcaacatg tcattgggcg gttcaaaaat gaaggccgca ttgaaaacaa cagcagaaat       540
     ggccgtccac caaaactaac cgttagagac aaacgcctaa ttaagcatat tatcgacaag       600
     gatcctttcc agagcgctgt taaaataagt tcagctattg ctacaacgct taagaaggat       660
     gttcacccag aaaccattag aagaaccatt aaagagtttg gattcctctc atgtacacca       720
     aggaaaaagc ctcatgtctc aaaaaaaaat cgacttaagc gtcttgagtt cgctaaagct       780
     tacagaaatc attctgaaga gttctggcag caggttatat tttcagacga gtctaaatat       840
     aacatttttc ggtcagacgg gcgttataaa gtttggcgaa aacctggaga tgcctataga       900
     cccaaaaaca caattaaaac tgtgaagcac aatggcggag gactcatggt atggggctgc       960
     atgggctttg ctggtgtcgg gaacctagaa ataattgacg gtataatgga tcataaaaag      1020
     tatattgaaa tcctgaaaag aaatttaaaa caaagtgctg atcatcttgg tattgggtca      1080
     tcttttcact tttaccaaga taatgaccca aagcacacgg ccataaatac acgtttatgg      1140
     cttatatata atgttccaca tttgctgaag ccgcctccac aaagtccgga tttgaatccc      1200
     attgagcatt tgtggaataa actagaggag catttgaggg gtcgaacaat aacgagtagg      1260
     tctgatctca aggtagcctt gctggaggag tgggcgaaaa ttgaccacgc ctatataaaa      1320
     actttagttt cttcaatgcc tcgacgtctt caggaagtaa ttaaaatgaa gggatatccg      1380
     acgaagtatt aaaaagctta aaatagtaaa ttaatttata tttttccgat gttaatacta      1440
     atgtatcatg acttttgtgg aaattaaatg agggataatt ttggtttttg ttttttgtat      1500
     agaaactatt ggagatttcg ttatttttgt tcttaaatac tattcataaa tacatatttt      1560
     acttgaagtg attttttgtt ttatttaaat ccgttgaata atgaaggaat tcacacatat      1620
     agtaaaaaat agctgctgta tcatcacttt tgtggcacac tg                         1662
//
ID   Mariner-12_DK repbase;    DNA;    INV; 1661 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-12_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1661
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1205-1205 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~250-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1661 BP; 578 A; 276 C; 346 G; 459 T; 2 other;
     cagtggctca cagcttattt caaccagacc caatcaaaaa ctttaaatgc ctgtaaaaca        60
     taaaccaaag ggtttttcca aaaaatttwa acgcacaatg atagatttat gtttaaactt       120
     aatatttgtt aacttcatgt atttttatat atttttttaa tatttctttt taaattaaga       180
     acaaaaaaac aacgaaaaac aaggccacag cttatttcaa ccaaaaagtt tgcagttttg       240
     ctatacactg ttacttaaaa aagtaggggt tctaattttt tctgtgcttt ggtcaatcta       300
     ttcggagttg gttcaagctt attcttggaa aatttggcaa gaatttagtg cgcgaaaatt       360
     cggtaagaaa aatgggacca cgtacaacaa tcgaacagcg agaactcgtg ataaaacatt       420
     ttaaaaaatg gaaattcgcg taggaaaatt gccgaaatgg ttggtctaag tgattccact       480
     gctccgtagt atcatatacc gttttgtccg tgagaatagg gtgcacgata agggaagaac       540
     ggcgcccaac aaaattttga acccaacaga cgagcgccat atagtccgga aaattcggga       600
     aaatcccaaa ttatcggcac cgaaaattgc aagtgaggtg gagaccgagt tgggcaagtc       660
     ctgccaccca gaaacaattc gtcgtgtgct ccgagagcat gactataatg gcagaatagc       720
     acggaagaag ccgatcatta gtgccaagaa tatcaagaga cgcttaaatt ttgcaaaaga       780
     gcacttagga aaggattctt cattctggaa tacagtcata tttgcggamg agtcaacgtt       840
     caatatattt ggctcagatg gtgcatccta tgtgtggcga aagccgaata ctgagctgca       900
     aacaaataat ctaaaagcga cagttaagca tggcggggga agcgttatgg tatgggcctg       960
     tatgtcggca gcaggtgttg gaaatctcga gtttattgat accacaatga aaaaaactca      1020
     atatcttgag attaaaaaaa aattgatcga aagcgccgag ggacttggta ttcgggaaga      1080
     ttttcgtttc taccaagaca acgatccgaa acataagtcg ggcattgttc aggcttggct      1140
     ttactggaac tgcccgcacg ttatgcagcc gcctgcacag tcgccagaca tgaatgtgat      1200
     tgaaaatttg tgggcaattt tggacacaaa tattcgaaaa cgaaagattt cgaataaatc      1260
     ggacctgaaa gaggcgttga tagaggagtg ggcaaaaata gcccaagaaa caacccaaaa      1320
     actggtggat tccatgccaa aaaggcttaa aatggttatg gatagcaaag gtggccatac      1380
     caaatattaa aaaaaatatt ggtaatcttt aagcattaaa aatacataga agtaccgacc      1440
     tggttgaaat aagctgtggc attgtttttc gttgtttttt gttgttaatt aaaaaaaata      1500
     tataaaaaaa tatataaaaa tacacgaagt taacaaatat taagtttaaa cataaatcta      1560
     tcattgtgcg tttaaatttt ttggaaaaac cctttggttt atgttttaca ggcatttaaa      1620
     gtttttgatt gggtctggtt gaaataagct gtgagccact g                          1661
//
ID   Mariner-12_DRh repbase;    DNA;    INV; 1640 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1640
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1406-1406 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. ~770-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1640 BP; 506 A; 305 C; 312 G; 516 T; 1 other;
     cagtggatcg cagcttattt cgtgcagtta cctaaaaaaa gttcaagtcg ttattccagc        60
     taaactaaga aagataacag aaaaatttaa atgcagtatt ttaaaaggga atattaactt       120
     gtttattaaa ttaaaacgat ttccttaatc gtaaaaacaa aatacttatt aaataaaaac       180
     aaaatgtgca ggcttttttc atgccgcagc ttatttcgtg cagttcattc ttcttaactt       240
     attatttgta atttaaaagc taatatttgg tatgtcctca tttctggttc aggacagctt       300
     taagacgatt tcccaaggaa gaaactaact tttwagtggt ttccactgga atttttggcc       360
     attcttccat aagaacactt tacatgtcgt ttttgttcga aatcttcctc ttccttatag       420
     cgatgtccaa tatttcccgt aaatttttga tcacatttaa gtctggagac tgtgctggcg       480
     ttaagacggc atgagggcag ttccagacaa gataaacctc cacaattcct gctgaatgct       540
     tcggatcgtt gtcctggtaa aatcgaaatc gatcgcgtat gcccagtttt tcagcagttt       600
     ggagcaggtt ttccttatga atctgtaggt acatcttggc catccatgat aacttcaaaa       660
     aaatcgaggt tgccccgcca gaagctgcca tacaggccca aaccataaca tgacccccgc       720
     catgcttgac cgtagcttat aggtgtttgc tttccagctc tgtattagga acaagggagc       780
     atattcttct tccgatttcg ttttggaatg acgtgttatt tgcagacgag tcaaaatgta       840
     aactttttgg tttaatatgt ttggcggcga cctaatacag agctcgaaaa caaactctta       900
     aaagctacag tcaagcatgg cgggggtcat gttatagttt gggcctgtat ggcagcttct       960
     ggcggggcaa cctcgatttt ttttgaagtt atcatggatg gccaagatgt acctacagat      1020
     tcataaggaa aacctgctcc aaactgctga aaaactgggc atacgcgatc gatttcgatt      1080
     ttaccaggac aacgatccga agcattcagc aggaattgtg gaggtttatc ttgtctggaa      1140
     ctgccctcat gccgtcataa cgccagcaca gtctccagac ttaaatgtga tcaaaaattt      1200
     atgggaaata ttggacatcg ctataaggaa gaggaagatt tcgaacaaaa acgacatgta      1260
     aagtgttctt atggaagaat ggccaaaaat tccagtggaa accacttaaa agttagtttc      1320
     ttccttggga aatcgtctta aagctgtcct gaaccagaaa tgaggacata ccaaatatta      1380
     gcttttaaat tacaaataat aagttaagaa gaatgaactg cacgaaataa gctgcggcat      1440
     gaaaaaagcc tgcacatttt gtttttattt aataagtatt ttgtttttac gattaaggaa      1500
     atcgttttaa tttaataaac aagttaatat tcccttttaa aatactgcat ttaaattttt      1560
     ctgttatctt tcttagttta gctggaataa cgacttgaac tttttttagg taactgcacg      1620
     aaataagctg cgatccactg                                                  1640
//
ID   Mariner-12_DSuz repbase;    DNA;    INV; 1638 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1638
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 95-95 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus.
XX
SQ   Sequence 1638 BP; 545 A; 300 C; 312 G; 481 T; 0 other;
     cagctgtgtt cattaaaata gcagtgcgac agaagcgaaa ctatataacg gtttattagc        60
     atagtccttt tcattagtta atcgctagta catctctttt gtagaatgga tcatagagat       120
     acaaaacaag caaaaacccc attagatttg gtctgttttt gggtttcttt catatttttg       180
     cacacggaca caacatttcg gctgttcact aaaatagcag tttttgattt tcttccagga       240
     aaagtcccga aaatgtttgt aatttggtaa aaataggttt ttaatgaaga ccattattat       300
     aaattgaacc ataatacact ataactatag aaaaaaatta actttagtgg gtagaggacc       360
     tcattgcttc aagggagaaa ggaaaaattg attgagctta gaaaggaggg caaaacgtat       420
     caatatattc aaagtccctt aaaatgtaca gccaatatga gttacaatgc cataaactat       480
     gaaccgaagc ccgaaaaacg ttatgcgata cggaaaacca caattataga ggactttcgc       540
     aaagtgcgct tcagcaaaac ttatcctttt gcatcctgta ggactataaa agcggatgtg       600
     agcttgggaa tcagggatgg cactattctc cgaagtctgt tcgatgaaaa tttgaatgct       660
     agaagtccac caaaggagcc attacttggt aaaagacacc tcaaagacaa gttgaagttt       720
     gccaaaagcc acttgaacta gccactttca aaaggtcgat atatcctttg gacagatgag       780
     tcttagctgg tgttttttgg tggaacaggt tcaaaatagt atgtccgtcg accaccaaac       840
     accgggtacc acccaaaaca aaatctcaag accgttaagc agatggcctt aaaatcatgg       900
     tatgggcaaa tttctcatat agcggtgtgg gccccatacg tttgatcgat gagatcatgg       960
     accaacatgt ttacgtaaat atactgagaa acgtcattct gtcgtatact gatgatcaaa      1020
     tgtccttaat atggacattt cagcaggaca atgatcctaa acacaccaac aaattggcca      1080
     caccaacatt tagccaaaaa caaattgacg taatgccgtg tccagcacag tccccggatt      1140
     taaatccgac tgaaaactta tcgagggaca taagcgtttt gttgtcaaga aatccccgac      1200
     ttcttagccg cagctttggc aagttgtgca ggagggacgg ggtcagagtt cccgcaaacg      1260
     ttgcaaggac ttggtggact ccatgccacg taggtgttag cctgtaatag ccaataaagg      1320
     ccatacaaca aaatatttgg tcgtaatcaa atcgatattt agtaggatta agttattaat      1380
     gagccatatt gaattttatc atatttttct tttaagactg ctatttcaat gaacaccata      1440
     attcagtctt tcttttttgt tattatccat atttgctaaa atattgaagt acccaacagg      1500
     aaaaaacagc taaattattt aaaaataaat aattaaaact gttgtattta agttttgttt      1560
     caatgatgtg tttataatag tgtttttcga ttttatacgt gcaggtcgta tgcactgcta      1620
     tttcaatgaa cacagctg                                                    1638
//
ID   Mariner-12_HSal repbase;    DNA;    INV; 3270 BP.
XX
AC   .
XX
DT   07-DEC-2011 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3270
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 852-852 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Composed of two mariners in hair-pin
CC   structure.
XX
FH   Key           Location/Qualifiers
FT   CDS           1738..2799
FT                 /product="Mariner-12_HSal_1p"
FT                 /translation="MGDYTLNEIVDMIYILGECRGVYVNAAALYAQRFPRR
FT                 RHPCNVTIRNLTTRARTGQMTRQRRHHEYDENDVRVLTILASVYLDPHISS
FT                 RRLEVSTGIPKSTILRILKARKYHAYHITLTQTLLPADFDRRLEFCRWALQ
FT                 QIDRDPNFFRFVMFSDEATFKNTGELNRHNCHYWSDTNPHWHRAIDNQHRW
FT                 SLNVWCGIVNGYLVGPFFFERTVNANTYLDLLTDQLPHLLENVDLETRRRM
FT                 FFQQDGAPPHFARIVRRFLDERYPNRWIGREGPIAWPPRSPDLTSLDFYLW
FT                 GYLKEVVFKEEPTTREDMENRIRRACEAIPRNVLLSTVAHFQRRLNYCINA
FT                 NGATFENLLNS"
XX
SQ   Sequence 3270 BP; 938 A; 691 C; 707 G; 934 T; 0 other;
     cagggtggac cattttaacc tttaatggag aataactcga ccggtgagcg aaataatgaa        60
     aaaagtttca tacaaaagtt gttggacaag gagggggacg tatgaccata tccttgaatt       120
     tgaccttgac tttgacctta ggggttattt gaaggtcaaa taacattttt taaatggaat       180
     tgcctatttt cgaccccgga tttggaaaga gcgggaaatt ttagaatagg atatggtatg       240
     atcgataaga tcaaatgtca tgttttgagg tcatttcaaa gtcaaaagga acttgtacgt       300
     gtattcatgc gaaaatcgta tctgtatacg gggatttcta aattatcttc tacacttagc       360
     attacccaga gacaacgacg tggacgtggt agaattctgc ctctttcggg gtgcttgttt       420
     agagtgagtc cccttgcctc tcactatgca tactttgcta ttgttaatct agctattcaa       480
     aaggttttcg aaagttgcac cgttagcatt tatgcaataa ttgagccttc tttggaaatg       540
     ggccactgtg ctgagcaaga catttcgtgg aatcgcttcg tcttatgcga ttttccatat       600
     cttctcttgt tgttggttct tctttgaaaa caacttcttt caaatagccc cagagataaa       660
     aatcgagtga cgtcaaatca ggagaacgag gaggccatgc aatcggaccc tctcgaccaa       720
     tccatcggtt cgggtacctt tcatctaaaa acctcctgac tatacgtgca aagtgcggtg       780
     gtgcaccatc ctgttggaag aacatccttc gcctggtttc caagtctacg ttctccaaca       840
     aatgaggcaa ttggtctgtg agcaaatcga ggtacgtatt tgcattcaca gtacgttcga       900
     aaaagaatgg accgaccaag tatccattaa caatcccgca ccagacattg aggctccagc       960
     ggtgttgatt gtcaatcgct ctatgccagt gcggattggt atcggaccaa taatggcaat      1020
     tatgccggtt caactcccct gtgttcttga acgtcgcttc atcggaaaac atcacaaatc      1080
     taaaaaaatt agggtcccga tcgatctgct gtaaggccca ccggcagaac tcgaggcgtc      1140
     gatcaaaatc ggcaggtaat aatgtttggg tcaaagtgat atgataagca tggtacttcc      1200
     gagccttcaa aatccgcaag attgtggact tcggtattcc tgtggatacc tccagtctac      1260
     ggctcgaaat atgaggatcg agatagaccg atgccaaaat agtcagcact cgaacgtcat      1320
     tctcgtcata ttcgtgatga cgacgttgac gtgtcatttg cccagtacgt gccctcgtgg      1380
     tcaaatttct gatcgtcacg ttacacggat gtcgtctcct cggaaagcgc tgagcgtaaa      1440
     gtgctgcggc attcacatgt ggccggtagg agcacgcaga gaaagacaat atgtccacgt      1500
     cgcttccgag taatgctcac atttttcact cgtaaggaat tattcgctga gaatacaaaa      1560
     tagtgttatc attgttatta ttatcattat ccgcccaaaa ataatattga taataataat      1620
     tataacaata attattataa agctagtata ataaatattg ttcattgaga taaaactcaa      1680
     ttattatcat acagcttgtc tcttagtatt aataagcaga gatctggtgt gattaaaatg      1740
     ggagattata cactcaatga gatcgttgat atgatttata ttttaggaga atgtcgaggt      1800
     gtctatgtga atgccgcagc actttacgct cagcgctttc cgaggagacg acatccgtgt      1860
     aacgtgacga tcagaaattt gaccacgagg gcacgtactg ggcaaatgac acgtcaacgt      1920
     cgtcatcacg aatatgacga gaatgacgtt cgagtgctga ctattttggc atcggtctat      1980
     ctcgatcctc atatttcgag ccgtagactg gaggtatcca caggaatacc gaagtccaca      2040
     atcttgcgga ttttgaaggc tcggaagtac catgcttatc atatcacttt gacccaaaca      2100
     ttattacctg ccgattttga tcgacgcctc gagttctgcc ggtgggcctt acagcagatc      2160
     gatcgggacc ctaatttttt tagatttgtg atgttttccg atgaagcgac gttcaagaac      2220
     acaggggagt tgaaccggca taattgccat tattggtccg ataccaatcc gcactggcat      2280
     agagcgattg acaatcaaca ccgctggagc ctcaatgtct ggtgcgggat tgttaatgga      2340
     tacttggtcg gtccattctt tttcgaacgt actgtgaatg caaatacgta cctcgatttg      2400
     ctcacagacc aattgcctca tttgttggag aacgtagact tggaaaccag gcgaaggatg      2460
     ttcttccaac aggatggtgc accaccgcac tttgcacgta tagtcaggag gtttttagat      2520
     gaaaggtacc cgaaccgatg gattggtcga gagggtccga ttgcatggcc tcctcgttct      2580
     cctgatttga cgtcactcga tttttatctc tggggctatt tgaaagaagt tgttttcaaa      2640
     gaagaaccaa caacaagaga agatatggaa aatcgcataa gacgagcttg tgaagcgatt      2700
     ccacgaaatg tcttgctcag cacagtggcc catttccaaa gaaggctcaa ttattgcata      2760
     aatgctaacg gtgcaacttt cgaaaacctt ttgaatagct agattaacaa tagcaaagta      2820
     tgcatagtga gaggcaaggg gactcactct aaacaagcac cccgaaagag gcagaattct      2880
     accacgtcca cgtcgttgtc tctgggtaat gctaagtgta gaagataatt tagaaatccc      2940
     cgtatacaga tacgattttc gcatgaatac acgtacaagt tccttttgac tttgaaatga      3000
     cctcaaaaca tgacatttga tcttatcgat cataccatat cctattctaa aatttcccgc      3060
     tctttccaaa tccggggtcg aaaataggca attccattta aaaaatgtta tttgaccttc      3120
     aaataacccc taaggtcaaa gtcaaggtca aattcaagga tatggtcata cgtccccctc      3180
     cttgtccaac aacttttgta tgaaactttt ttcattattt cgctcaccgg tcgagttatt      3240
     ctccattaaa ggttaaaatg gtccaccctg                                       3270
//
ID   Mariner-12_LHu repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 370-370 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 98% identical to the consensus.
XX
SQ   Sequence 1287 BP; 398 A; 230 C; 290 G; 368 T; 1 other;
     ttaggtgttg gaattaattc gtagcgtttt acgagagatg gcggggatac tacagttttc        60
     tgtttttatc gtcagaagca aatttatctt aaatcagctg ttaggttagg tgttattttt       120
     acgacccatc ttactttcac ttgttaataa catcaagtta taattattta aatatgtcta       180
     aatttatacc aaataaagtg tttttgcggg gagttttatt acattacttt catatgaata       240
     aaactgctgc ggaaagccat aggattttag aagaagttta cggtgagcaa gctttagctg       300
     aacaaacgtg tcggaagtgg tttgcgcgat tcaagagcgg tgatttcgac ttagaagaca       360
     aggaacgacc tggacagcca aaaaagtttg aagacaaaga attggagaca ttacttgagg       420
     agaactcaac tcaaacgctc gaagagttgt ccacatcgtt gggggttgac ttttcaacag       480
     tgggaaaacg acttaaagcg ttaaggatga tccaaaagga aggacattgg gtcccatacg       540
     aattaaagcc gagggacgtt gaaaggcgtt ttttgacttg cgagttactg cttcaacggt       600
     acaaaagaaa aagtttttta catcggattg ttmctggtga tgaaaaatgg atatattacg       660
     ataacccaag cgcagaaaat catgggttaa gcctggacaa ccatcatcat cagtaccaaa       720
     acgtaatatt catggatcta agcttcttct ttgcatttgg tgggatcaac ggggtgtggt       780
     ttactacgaa ctgctgaatc cgaatgaaac catcactggg gatcgttacc gactgcaatt       840
     gatgcgcttg agtcgggcat tgaaggagaa acggccggaa tggagcgaaa ggcacgacaa       900
     aattattttg ctgcacgaca atgttagacc gcacgtcgca aagccagtgc aaacgtacct       960
     gcaaacactg aaatgggaag tcctaaccca cccgccgtat tctccagata ttgctccttc      1020
     ggattatcac ttgttccggt cgatggccca tggtttgtcc gcggagaaat ttacttctta      1080
     tgaagaatgc aaaacttgga ttgattcatg gatcgcctct aaagacgaag cgttttttcg      1140
     acgaggtatc cgtctcttac ccgaaagatg ggaaaaagtt gtggcaagcg atggaaaata      1200
     tttttagtaa tgtattttta tatttaaact tagaataaat cgttgtttct ctctaaaaaa      1260
     acgctacgaa ttaattccaa cacctaa                                          1287
//
ID   Mariner-12_LMi repbase;    DNA;    INV; 1319 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1319
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3252-3252 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1319 BP; 368 A; 309 C; 328 G; 314 T; 0 other;
     caacctctga caataaagtt cggtgaatga agtcagaacg gtcgatcggg caacacaggc        60
     gaatcacaac gctgcacctg cgtagcggcc ggtgttgaca acctgccccc accgtagttc       120
     agttgagcat cgtgtgtgtt ccgtgttaga cctgttggac gaagtgcttg tttagtgcgt       180
     tggttctgaa ctgagaacag gacaatgaac gagcaaagga tcaatttaaa gttttgtttt       240
     aagcttggca agacacctaa agaaacgcat gcgatgctgg tacgtgttta tggggatcaa       300
     gcactgtcca tgaagtgtgt gtacgagtgg ttcgcccgtt ttcgaggagg ccgggaaagt       360
     gtttctgaca atccccgtag cggacgaccg gcgaccgccg tcagtgacga aaacattgag       420
     aaagtgagga cattaatcac gaacgatcgt cgattaactg tgcgcatgat agcggatgaa       480
     ctgcagatta accgtgaatc cgtgcgacaa atccttaccc agaagttagg gaagaggaaa       540
     acgtgttgtc gtcttgtgcc acatcacttg actgacgatc agaagcaggc acgtttagag       600
     gcttcacagg attttgtcga aacggcggat gcgacaccca atttcttgaa ccgtattgtc       660
     actgaggatg aaacctggtg tctccggtac gaccctgaaa cgaaacggca aagcatggaa       720
     tggcgttctc cgacatcacc tcgtcgaaaa aggtcagagc cgaaaaatca cgcatcaaaa       780
     cgatgctcat cacctttttc gatagtcaag gcattatcca caaggaattt ctacctgagg       840
     gaacgacgtt gaacgctgca aggtacgttg aaattttgac ccgtttcatg caacgtctac       900
     gcagggtacg accccagtac gcacaaggtt cctggttttt tgttcacgac aacgctcgcc       960
     cacacacagc caatatcgtc aaacagttcc tggcaaaaaa gggggtggtg caacttgaac      1020
     atccaccata ctcgccggat ctcaatcctc cagacttctt cctattccct cgactcaaac      1080
     tcgctttgaa aggaaagaga tttgacgata ttcctgacat ccaacgaaac gtgacgaggc      1140
     ttttgaacac catcccaaag gaagacttcg tgcaaagttt ccaggacatg tatcgcagag      1200
     ctcagcggtg catagttatg ggaggtgact atttcgaagg acagtaaggt aactgtagtt      1260
     catagttcat ctacgttaat gttacaggac tattcaccga actttattgt cagaggttg       1319
//
ID   Mariner-12_PBa repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.03, Created)
DT   15-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 625-625 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           139..1209
FT                 /product="Mariner-12_PBa_1p"
FT                 /translation="MSDLVEFWRFYNKLKMEDQTVHFRHILLFYFRKGKNA
FT                 RQACEKLRKVYGDNALQERQCQRWFTKFRAGDFDLNDAPRSGRPTEVDDDK
FT                 IKALIESNPRYTTREIAETLNIHHSSVHDHLKKLGYVSKLDIWVPHELKEV
FT                 HLTARINICDMLIKREENDPFLKRLITGDEKWIVYNNVVRKRSWSRRDDSP
FT                 QTTSKANIHQRKVMLSVWWDFKGVVFFELLPRNQTINSNVYCRQLDSLNES
FT                 IIQKRPELVNRKGVVFHHDNARPHTSLTTRQKLLELGWDVLPHPPYSPDLA
FT                 PSDFHLFRSLQNSLHGITFNSDEAVNQHLVQFFADKDRSFYERGIMKLTER
FT                 WQKVIEQNGQYIID"
XX
SQ   Sequence 1287 BP; 388 A; 265 C; 282 G; 352 T; 0 other;
     ttgggttgtc ggaaaagtca tgacgcattt ttgtaacaga tggcgctagt tcatttttgg        60
     aagtactaga gtcattcgca tctatgttat tgctatgtca tttgacagct gacagttcta       120
     gcttcattct aaaaaaaaat gagcgatttg gttgagtttt ggagatttta taacaagttg       180
     aagatggaag accaaactgt gcattttcgc catatattac tgttttactt ccgtaaaggg       240
     aagaacgcgc gtcaagcttg tgaaaagttg cgtaaagttt acggtgacaa tgctctacaa       300
     gaacgtcagt gccaacgatg gttcacgaaa ttccgtgctg gtgattttga cctcaacgac       360
     gctcctcggt cagggaggcc caccgaggtt gatgacgaca aaataaaggc attgatcgag       420
     tcaaacccac gttacacgac acgagagatt gcagaaacat tgaacatcca tcattcaagc       480
     gttcacgacc acctgaagaa gctgggatac gtaagcaagc tcgatatttg ggttcctcat       540
     gaactcaaag aagttcattt gacggcgcgt ataaacatct gcgatatgct cattaaacgt       600
     gaggaaaacg atcctttttt gaagcgactg ataactggtg atgagaagtg gattgtttac       660
     aacaatgtgg tgcgcaaacg gtcttggtcc cgacgtgatg attcgcctca aacgacatca       720
     aaagcaaaca ttcatcagag gaaggttatg ctctcagtgt ggtgggattt taaaggtgtc       780
     gtgtttttcg agctcctacc aaggaaccaa acaatcaatt cgaatgtgta ctgtcggcaa       840
     ttggacagtt tgaacgaatc catcatccag aaacgtccag agctcgttaa tcgtaaagga       900
     gttgtgttcc atcacgacaa cgcgagacca cacacaagtt tgaccacccg tcaaaaatta       960
     ttggagcttg gatgggatgt gttgccacac ccaccatact cgcctgacct tgcgccgtca      1020
     gacttccact tgtttcgctc tcttcaaaac tccttgcatg gtataacgtt taattcagat      1080
     gaggctgtaa atcagcacct tgttcagttt ttcgccgata aagacaggtc cttctatgaa      1140
     cgaggaatta tgaaactcac tgaaagatgg caaaaggtta tcgaacaaaa cgggcaatat      1200
     atcattgatt gatctttgtt ctttatataa ataaatgacc tttgaaaaac atagaaaaaa      1260
     tacgtcatga cttttccgac aacccaa                                          1287
//
ID   Mariner-12_RPr repbase;    DNA;    INV; 1574 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   25-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1574
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3259-3259 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1332
FT                 /product="Mariner-12_RPr_1p"
FT                 /translation="MAKTAEISNTIRFKVIKLRNNKKSYRQIASILNMNMS
FT                 TVRYIIKRYEDRGTIENKRRTGRPKVLNERQRRGIVRQVRANPFTSAGELA
FT                 NMVATTSQRVSESTIRNVLHLTNYYGRTARKKPFISEKNRKKRLEFAKKYS
FT                 GKSIEFWENVLFTDESKYNIFGSDGRQYVWRKVNEEFKNQNIIPTVKHGGG
FT                 NVMVWGCVSAKGVGKLVFIEKNMNARMYVDILRQNLGQSVRKLGMENSFLF
FT                 QHDNDPKHTARVTEEWMLYNVPRRLHTPPQSPDVNIIEHIWQMLHVRIRKH
FT                 TISNKDSLKKALLEEWDKISLDDIKPLICSMPNRLKAIIEAQGLNTKY"
XX
SQ   Sequence 1574 BP; 597 A; 211 C; 288 G; 478 T; 0 other;
     cagtggctac aaaaagtatt tgcacaccta cgatttttgt tatttccaaa aggcaaatga        60
     aataaattat atcgtactgt cttatatttt tttgttagtc attttagata catattttat       120
     agaaaaaatt atttaattat atttatgttt gccaaaaaaa attaaaaact acattttaaa       180
     acacaaaaag tatttgcaca ccaaacaata ttcttgtttg tttaattaat aaatccgttc       240
     aaaggttgat ttaaaatttt aaattagaaa taattatgtt ttggttccaa ttcagttgtt       300
     agcaagatta acatggcaaa aacagcagaa atttcaaaca caattcgctt taaggtaatt       360
     aaattgcgga ataacaaaaa aagttatcgg caaatcgcta gtatcttaaa tatgaacatg       420
     tccacggtgc gatacatcat taaaaggtac gaagataggg gaactattga aaataaacga       480
     agaaccggta gacctaaagt gttaaatgaa agacaaagaa gaggcattgt tcgtcaggta       540
     agggccaatc cattcacaag tgcgggcgag ttggcgaata tggtcgcgac aacatctcag       600
     cgagtgagtg aaagcactat aaggaatgtt ttgcacttga caaattatta cggtagaact       660
     gctaggaaaa agccattcat tagtgagaag aatagaaaaa aaagactaga gttcgcaaag       720
     aaatattcag gcaagtcaat agaattttgg gagaatgtgc tcttcactga cgaaagtaaa       780
     tataacattt ttggaagtga tggccggcaa tatgtttggc gaaaggtaaa tgaggaattt       840
     aaaaatcaaa atataattcc gacagtgaaa catgggggag gcaacgtgat ggtttggggc       900
     tgtgtttctg caaaaggtgt gggtaaactt gtgtttattg aaaaaaatat gaatgctcga       960
     atgtatgtag atattctgcg ccaaaatttg ggccaaagtg ttcgtaagtt gggtatggaa      1020
     aattcatttt tattccaaca cgacaatgat ccgaaacaca cagcgagagt tacagaggag      1080
     tggatgctct ataatgtgcc aaggagactt cacacacctc ctcaatctcc agatgtgaac      1140
     atcattgaac atatttggca aatgctacac gttagaatac gaaaacatac aatttctaat      1200
     aaagattcac tgaaaaaggc tttactagag gaatgggata aaataagcct tgatgatatt      1260
     aaaccattaa tttgttcgat gcctaacaga ctcaaggcta taatagaagc ccagggatta      1320
     aatactaaat attaaaatta atttttttat taaattttat atagaatcaa gatgtgtgca      1380
     aatacttttt gtgttttaaa atgtagtttt taattttttt tggcaaacat aaatataatt      1440
     aaataatttt ttctataaaa tatgtatcaa aaatgactaa taaaaagata taagacagta      1500
     cgatataatt tatttcattt gccttttgga aataacaaaa atcgtaggtg tgcaaatact      1560
     ttttgtagcc acag                                                        1574
//
ID   Mariner-12_SIn repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-12_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1284
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 328-328 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1206
FT                 /product="Mariner-12_SIn_1p"
FT                 /translation="MSSFVPEKQHLRHALLFLFNQKKKAVESHRLLVETYG
FT                 EHAPSIRTCETWFRQFKSGDFNVKDSERSGRPQKCEDEQLQELLDDDPTQT
FT                 QRQLAEALHVSQETISRRLRAMGKINKLGKWVPHNLNERQMENRKVTCEML
FT                 LQRHERKSFLYRIVTGDEKWIYFENPKRKKSWLSPGEAGPSTPRPNRFGKK
FT                 TMLCVWWDQSGIVYYELLKPGETVNTQRYRQQMINLNHALIERRPEWARRH
FT                 GKVILLHDNAPSHTAKPVKDTLKSLGWDILPHPPYSPDLAPSDYHLFASMG
FT                 HALAEQHFSNFEEVGKWLDKWFAAKDKQFFWHGIHKLPERWAKCVEADGQY
FT                 FE"
XX
SQ   Sequence 1284 BP; 419 A; 269 C; 277 G; 319 T; 0 other;
     ccaggtgtat gcataagttt tttccggttt cactaagaga tggcgccagc gaaaagtacg        60
     cagcgtatta atttgacaca tacgtcattt tgttcgtctg acatagaact acaaacacac       120
     acaagttgag tccgccaaaa actagcgtct ttgttttatt gttcagtgat catgtcgagt       180
     tttgtgcctg aaaaacaaca tttgcggcac gcattgcttt ttttatttaa tcaaaagaaa       240
     aaggctgttg aaagtcatcg tttgctggta gaaacatatg gtgaacacgc tccatcgatt       300
     agaacatgtg agacatggtt tcgacaattt aaaagtggtg atttcaatgt gaaagacagt       360
     gagcgctctg gtagaccaca aaaatgcgaa gacgagcaat tgcaggaatt attggatgat       420
     gacccaactc aaactcaacg gcaattagca gaagcattac atgtatcaca agaaacaatt       480
     agcagacgtt tacgagcaat gggaaagatc aataaactcg gtaaatgggt cccacacaat       540
     ttgaatgaac gtcaaatgga aaatcgcaaa gtcacttgtg aaatgctgct tcaacgccac       600
     gaaaggaaat catttttgta tcgaattgtg acgggtgacg aaaaatggat ttattttgaa       660
     aacccgaagc ggaaaaaatc gtggctttca cctggcgaag ccggtccatc aacaccaagg       720
     ccaaatcgct tcggcaagaa gaccatgctc tgtgtctggt gggaccagag cggtattgtg       780
     tattatgaac tcttgaagcc cggcgaaacc gttaatacac aacgctatcg ccaacaaatg       840
     attaatttaa accacgcatt aatcgaaaga cgaccggaat gggccagaag acatggcaaa       900
     gtgattttgt tacacgacaa tgcgccgtct cacacagcaa aaccagtgaa agacacctta       960
     aaatctcttg gatgggacat ccttccgcac ccgccgtact ccccagacct ggcgccatct      1020
     gactatcacc tcttcgcatc aatggggcac gcgctcgcag agcagcactt cagcaatttc      1080
     gaggaagttg gaaaatggct cgacaaatgg tttgccgcaa aagacaagca gtttttctgg      1140
     catggtattc ataaattacc tgaaagatgg gcgaaatgtg tagaagccga tggccaatat      1200
     tttgaataaa aaaaattaat ttcccttgaa aattacgtgt ttttttttac caaaaaaccg      1260
     gaaaaaactt atgcatacac ctgg                                             1284
//
ID   Mariner-13_ACe repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-13_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1291
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 523-523 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are >95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1056
FT                 /product="Mariner-13_ACe_1p"
FT                 /translation="MECKNEHFRHVLLFCFRKGMKASEAHKELRAVYGDEA
FT                 LKERQCQNWFAKFRSGDFSLKDNQRSGRPIDVDDDQIKAIIESNRHISVRE
FT                 IAERLNVSHTTIENHLKCFGVIKKLDIWVPHELKEIHLTQRINICDLHLKR
FT                 NKIDPFLKRIITGDEKWIVYNNTNRKRSWSKPNEPAQTSSKAELHQKKIML
FT                 SIWWDFKGVVYFELLPRNQTINSDVYCQQLMKLEEAIKEKRPELANRKGIV
FT                 FHHDNARPYTSLATRQKLLELGWDVLPXVRHTHLILHPRTTIYFDHCKTL"
XX
SQ   Sequence 1291 BP; 432 A; 222 C; 250 G; 384 T; 3 other;
     ttgggttggc aagaaagtaa ttgcggtttt tactggtaga tggtgttgat tgaagttttt        60
     gatattttga cgtttcgaag tgtcaaagtt atatgtttgt ttgacagctg atactttagt       120
     cttcattcag taaaaaaatt acatcgatcg aacatttagt ttttgttcag caattgttta       180
     aacatggagt gtaaaaatga gcattttcgt catgttttgc ttttttgttt ccgaaaagga       240
     atgaaagcat ctgaagctca taaggagtta cgtgctgtgt atggtgatga agccttaaaa       300
     gaacgacagt gtcaaaattg gtttgccaaa ttccgttctg gagatttttc actcaaagat       360
     aatcaacgtt ccggtcgacc tattgatgtt gatgatgacc aaatcaaagc cataattgaa       420
     tcgaatcgtc atataagtgt gcgggagata gcagagaggt taaatgtatc acacacaaca       480
     attgaaaatc acttgaaatg ttttggagtc attaaaaagc tcgatatttg ggttcctcat       540
     gaattgaaag aaattcactt aacacaacga atcaacattt gcgatttaca tctcaaacgc       600
     aataaaatcg accctttctt gaagcgaatt attacgggtg atgaaaaatg gatcgtctat       660
     aataacacca atcgaaaacg atcatggtct aagcctaatg aaccagcaca aacctcatcg       720
     aaagccgaac tgcatcaaaa aaagataatg ctgtcaattt ggtgggattt caaaggtgtt       780
     gtgtattttg agctgcttcc aaggaatcaa acgattaatt cagatgtcta ctgccaacaa       840
     ctaatgaaac tggaggaagc aatcaaagaa aaacggccag agttagcgaa tcgcaaagga       900
     atcgtctttc atcatgacaa tgcaagacca tacacatctt tggccacgcg gcaaaaatta       960
     ttggagcttg gttgggatgt gttgccacwt gtccgccata ctcacctgat cttgcaccct      1020
     cggactacca tttatttcga tcattgcaaa actctttgaa tggaaaaact ttcaccaatg      1080
     atgatgatgt caaatcgcac ttagttaggt tttttgccga taaggatcag aaattttatg      1140
     aacaaggcat tatgaagctg ccagaaaaat ggcaaaagat cattgatata atgacaatat      1200
     atcatcgaat aaagttattt cgttgtacaa tacaaaaaaa ttggcttcag cwttctttta      1260
     aaaaaacgca aktactttct tgccaaccca a                                     1291
//
ID   Mariner-13_AEc repbase;    DNA;    INV; 1300 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1300
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 556-556 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           193..1092
FT                 /product="Mariner-13_AEc_1p"
FT                 /translation="MNSTDIHVIFLYEYKLGNNAAKAARNINQAFGENTVN
FT                 DRKVQRWFEKFRSGDFSLQNEPRGRPKTSVKNDALKALVETNPTVSTRELA
FT                 TRMKVDHTTILRHLSEIGKVKKMDKWVPHELTERNKLDRLNVCSSLLTRFH
FT                 REPFFDRIITCDEKWVLYDNRKRCARWLDRNEACAHTPRPSLHPRKILITV
FT                 WWNVTGVIHYSFLRTGETITAEKYCQYIDEMHEKLKIIRPSLVNRHGPILL
FT                 HDNARPHTSYKTIAKLNELKYEILQHPAYSPDLSPTDFHFFKHLEQFLRAK
FT                 QYENEDRK"
XX
SQ   Sequence 1300 BP; 429 A; 229 C; 248 G; 394 T; 0 other;
     tattaggttg gtgcatatga aatgtcggat tttctttaca tatgaacgtt tgtctccctg        60
     ttttcgttat gcttttgttt ttggcataac ctcgtttata gtcgtattgt ccattgccag       120
     agtcacattt caacaaagaa gattttctca aaagtgttcc attttgttat ttgttttgaa       180
     tttcgtaagg atatgaattc aaccgatatt catgtaattt ttttatatga gtataaactt       240
     ggtaataatg ctgcaaaagc tgcacgcaat ataaaccagg catttgggga gaatactgtt       300
     aacgatcgaa aagtgcagcg ttggtttgaa aaatttcggt ctggtgattt ttccctacaa       360
     aatgaaccgc gtggaagacc caaaacgtct gtgaaaaatg atgctctgaa agcattggtg       420
     gaaacgaatc caactgtatc tacaagggaa cttgctacca gaatgaaagt tgaccataca       480
     acgatattgc gacacctttc tgaaattggc aaggtgaaaa aaatggataa atgggtaccg       540
     cacgaactaa ccgagcgaaa taagctggat cgattgaacg tatgctcatc attactaacc       600
     cgatttcatc gagagccatt tttcgatcgg attattactt gtgatgaaaa atgggttctt       660
     tacgacaata ggaaaaggtg tgctcggtgg cttgatagga atgaggcttg tgctcatact       720
     ccaaggccat cacttcatcc acggaaaatt ttaataacag tttggtggaa tgtgactgga       780
     gtaattcatt actcattcct tcgaactggg gagacaatta cagccgaaaa gtactgccag       840
     tacattgatg aaatgcatga aaaattgaaa attatacgcc catcacttgt taatcggcat       900
     ggcccaatac ttctccacga caacgctcgg ccgcatacgt cgtacaaaac aattgcgaaa       960
     ttaaatgaat taaaatatga aattttgcag cacccagctt attcaccgga tctttcgcca      1020
     accgactttc atttttttaa acatttagaa cagtttttac gggctaaaca gtatgaaaat      1080
     gaagacagaa aatgaagact gaaaaattcc atatcagagt ttattgattc taaagatcag      1140
     aatttcttta agacaggcat ctatgcatta aaatctcgtt gggaaaagtg tattgaaaca      1200
     aatggagcat attttgatta aataaacagc ttttgaaaaa agatatgcag ttttatatat      1260
     tcacttaaaa atccgacatt tcatacgcac caacctaata                            1300
//
ID   Mariner-13_CFl repbase;    DNA;    INV; 1301 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-13_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1301
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 817-817 (2014).
XX
DR   [2] (Consensus)
XX
CC   single copy in the genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..1002
FT                 /product="Mariner-13_CFl_1p"
FT                 /translation="MDRFRTMHTLIDNTHSQRSRTVRTEEVIAAVERSVEE
FT                 DPNESIRRRAQQLELCPSTLWKILRKDLGLRAYKIQLVQELKPRDHHARRT
FT                 FGEWAENKIALDPHFHHKILFSDEAHFWLNGYVNKQNCRIWSGENPEAIIE
FT                 TPLHPQKITVWCALWAGGIIGPYFFKDDAGQNVMVNGEHYRSMITNFIVPQ
FT                 LNGVNVEELWFQQDGTTCHTARATIDLLQEMFGERIISRNGPVHWPPRSCD
FT                 ITSLDYFM"
XX
SQ   Sequence 1301 BP; 373 A; 272 C; 279 G; 377 T; 0 other;
     aagggtgttt tttttagagg tttgtttttc aaactggcaa cactgtttct agcgacagct        60
     gatttaacaa ttgacaactg attagtgttc agaatgtttt gccatttcac catgaataga       120
     cttacaccgg aacaacgctt acaaattgtg caaatttatt tcgaaaatca tgactcagtt       180
     cgcgaaactt accgtgcgct gcgtccattt tacggtcgac ataaacatcc atccgaataa       240
     gttattcgaa taactatgga tcgttttcgc accatgcata ctctaattga taatacgcat       300
     tcgcagagaa gtcgtacagt acgcaccgaa gaagttatcg ctgctgtgga gcgtagtgtt       360
     gaggaggacc cgaatgagtc gattcgccgt cgtgcacagc aattggagct gtgtccatca       420
     actttatgga agattttgcg aaaagatctt ggcttgagag cttacaagat tcagctcgtg       480
     caggaattga agccgcgtga tcatcatgct cgtcgtacgt tcggtgaatg ggctgaaaac       540
     aagattgctc ttgatcctca ttttcaccac aaaattttgt tcagcgatga ggctcatttt       600
     tggttgaatg gctacgtcaa taaacaaaac tgccggatct ggagtggaga aaatccagaa       660
     gcaattattg agacgcctct acacccgcaa aaaatcactg tttggtgtgc tttatgggct       720
     ggtggaatca ttggcccata tttcttcaaa gatgatgccg gccagaacgt tatggtcaat       780
     ggagagcact atagatccat gattactaat tttatcgttc cccaattaaa tggcgttaat       840
     gtggaagagc tctggtttca acaagacggg acgacatgcc acacagcgcg cgccacaatc       900
     gatttattgc aggaaatgtt cggtgagcgc ataatttcgc gaaatgggcc tgtgcattgg       960
     cctccacgat cgtgcgatat cacatctctg gattatttta tgtagggata tgtaaagtcg      1020
     ctagcctata ctgataaacc acaaactttg gaccacttgg aagccaacat tagccgtgtt      1080
     attgccgata tacggcctca gctactcgaa aaagtgatcg aaaattggac ttcgagattg      1140
     cgcttcattc gagccagccg cggcgctcat atgccggaaa tcatatttaa cactaatggc      1200
     ataaaattat cttctcaata aagccgatat tataaccatg accatgattt ttatgtgttt      1260
     tatttcattt taaagttcta tacctctaaa aaaaacacct t                          1301
//
ID   Mariner-13_DAn repbase;    DNA;    INV; 1641 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1641
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 269-269 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 25-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(365..736,678..1367)
FT                 /product="Mariner-13_DAn_1p"
FT                 /translation="MPRAPELSEKEKTQIETMAKCGVKVGEIAKRINRHRN
FT                 TIGNFLENPEKYAQSNRKGAVSKIDARTKRHIRALATAKTMSCAQIKAEFQ
FT                 LPISRQRVQQICKKXLNLQYDAKVHKPRHYQTLTKTTCSMMQRCTNQDITK
FT                 LLPRHKKARLAFYEKYKFWTNEFEKVIFSDEKKFNLDGPDGNQKYWRDPRH
FT                 PRQTCHKRNHGGGSLMVWAAFSAKGKSPICFVXGRINAQMYTDLLESELXP
FT                 FAEELHGEDWVFQQDNAPLHVARYTMSFLESKNIPLLQWPAISPDLNPIEN
FT                 LWGILSAKVYKSGRQFESLKGLKEAIVKEWDAIDTNTLQNLVNSMPQRLEL
FT                 VLQENGGSIPY"
XX
SQ   Sequence 1641 BP; 575 A; 276 C; 304 G; 482 T; 4 other;
     cctcagtaaa attgatattt gtgcaaaact tatttttgat ataacggtta ttcgaataac        60
     tatataaatc tttcgagtat acagattttt tttcgtatgc attgacagtc gtttctatga       120
     atttatttct tatctgcttt taatctatgg tccttttagg attttaaaga agacaaagtc       180
     atgcgttcaa tagaaagttg atatgtgtgc aaagttctgc atttgaattt tgagctcgac       240
     acgtcaactg acctccagta aaaagcgatt tattttaaga agtcgttcat ttcgtaacac       300
     aaaaagttta tattgttgcc atttattatt aattttctga gatttacaac atttttgatt       360
     aaaaatgccg cgtgcacccg aattaagtga aaaggagaag actcaaattg aaacaatggc       420
     taagtgtgga gttaaagttg gcgaaattgc caaaagaatt aataggcatc gcaatacaat       480
     tggaaacttt ttagaaaacc cagagaaata tgcgcaatcg aaccgcaagg gagccgtttc       540
     gaaaatagac gcccgcacta aacggcacat tcgagccttg gcaacagcta agacaatgag       600
     ttgtgcacaa ataaaagcag aatttcaatt gccaataagc aggcaaagag tgcaacagat       660
     ttgcaaaaaa katttaaacc tgcagtatga tgcaaaggtg cacaaaccaa gacattacca       720
     aactcttacc aagacataag aaggccaggc ttgcctttta tgaaaaatat aagttttgga       780
     caaatgaatt tgaaaaagtg atttttagcg atgagaagaa gtttaatttg gacggcccag       840
     acggtaacca aaagtattgg agggatccta ggcatccaag acagacttgc cataagcgaa       900
     accacggtgg tggctcactt atggtttggg ccgcttttag tgctaaagga aagtccccta       960
     tatgctttgt amcaggacgg ataaatgcgc aaatgtatac ggatctccta gaaagtgaac      1020
     ttttwccatt tgcagaagag ttgcatggcg aggactgggt atttcaacag gataacgctc      1080
     ctttacacgt tgcgaggtat acgatgtcgt tcctggaatc aaaaaatata cccttactgc      1140
     agtggccagc aataagtccg gacttgaacc caattgagaa cctttggggc atcctgtcag      1200
     caaaagtcta caagagtgga agacagtttg agtcattgaa aggcttgaag gaagccattg      1260
     ttaaagaatg ggatgctatc gacacaaaca cgctccaaaa cttggtaaac tcaatgcccc      1320
     aacgtttgga attggtctta caagaaaacg gaggttctat accatattaa aataataatc      1380
     ttaagtcatt ttgttaaaaa ttattactta gttccttgaa tttttgcgct ttttcaattt      1440
     tgcacaaata tcaactttcg ctgaagaatt ttttcaatta aattttctat atattaaaca      1500
     ttttataatt taataaaawt catgtttatc aaatttcaat accaactacc tatttaaaaa      1560
     aatattgata aaaaatttgg caagtaaaag ttaaaaaata aaccaacaaa atatgatgca      1620
     caaatatcaa ttttactgag g                                                1641
//
ID   Mariner-13_DBp repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1290
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 596-596 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. TA TSDs. ~70-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..1223
FT                 /product="Mariner-13_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MNKIEYRAVIRFLFLKEKSNDDIKKELDKVYKDSAPS
FT                 FSTIKYWTAEFKRGRTSIFDDDRPGRPREVTTPEIVDKVHGMILDDRRIKL
FT                 REIANALNISRERVGNILHEFLHMSKLSSRWVPRLLTMENKRNRLHIAKES
FT                 LALLNANKNEFFRRFVTVDETWIHHHTPESKEQSKQWISTGETAPKKAKIG
FT                 LSANKVMATVFWDARGVIHVDYLEKGRTITGEYYSNLLGRFDSELKKKRPH
FT                 MAKKKVLFHQDNAPAHKSVVAMSKLCELHYEILPHPPYSPDLAPCDYYLFP
FT                 NLKKWLGGKKFQSNEQVICETNAYFEDLDKSYFMEGIGKLEDRWSKCIRLK
FT                 GDYVEK"
XX
SQ   Sequence 1290 BP; 416 A; 233 C; 285 G; 355 T; 1 other;
     cgagggtagg ctgataaaaa gtcggcctac aaagaaaaaa ttttttttaa ttcgtaaata        60
     ttttattcga ttagtgtttt ctatcagmtg attactgtga aagtttcatg cggttttatc       120
     aacactggta attttggcgg gacttttagc gcattcactt ttgcattgtc gtcaacatga       180
     ataaaatcga atatcgtgct gtcataagat ttctgttttt aaaagagaaa tccaacgacg       240
     atattaaaaa ggagttagac aaagtttata aggattcagc tccatcgttt tcaacaataa       300
     aatattggac tgctgaattt aaacgcgggc ggacaagcat ttttgacgat gatcgcccgg       360
     gtcgtcccag agaggtgaca acaccagaaa ttgtggataa agtccatgga atgatattgg       420
     atgatcgccg aatcaagctg cgagagattg caaatgctct aaacatttct cgggaacgcg       480
     ttggaaacat tttacacgaa tttttacaca tgagtaagct ttcgtcaaga tgggtgccgc       540
     gattgctcac aatggaaaat aaacgcaacc gcttgcacat tgcgaaggag agtttggcat       600
     tgcttaacgc aaacaaaaac gaattttttc gtcgttttgt gactgttgac gaaacctgga       660
     ttcatcacca tacaccagag agtaaggaac agtcaaagca atggatttca actggagaaa       720
     cggcaccgaa aaaggcaaag atcggtttgt cggccaacaa ggtgatggca acggttttct       780
     gggatgcccg aggtgtaatt catgtggatt atctggaaaa aggcagaaca attacgggag       840
     aatactattc caatctcttg ggacgatttg attcggagct gaagaaaaaa aggccgcaca       900
     tggcgaagaa aaaagttttg tttcaccagg acaatgctcc cgctcacaag agcgttgtcg       960
     ccatgtcgaa attgtgtgaa ttgcactacg aaattctacc ccatccaccc tattctccag      1020
     atttagcacc ctgtgactat tatttatttc caaacttaaa aaaatggctt gggggtaaga      1080
     aatttcagtc aaatgaacag gtaatctgtg aaacaaacgc ctattttgag gacctggaca      1140
     aatcctattt tatggaaggt attgggaaac tggaggatcg gtggtccaag tgcatacgtc      1200
     taaaaggaga ttatgttgag aaataaaaaa gcaaatttaa aaaaaaacgt attttctttg      1260
     taaggccgac tttttatcag cctaccctcg                                       1290
//
ID   Mariner-13_DEl repbase;    DNA;    INV; 1304 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1304
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4034-4034 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..1188
FT                 /product="Mariner-13_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MEAKRELVQNLHLQGKKTSEIVKLLKNLNVNRRFVQR
FT                 TVARLKATGSVDIAKKTGRKRSVRTPKIIKNVRERIRRNCARSARKLANEL
FT                 NVSRKTIRNIIKDDLGLKPYKKKRIHGLTERQKKMRQERSGQLLRRHAGCN
FT                 TVFSDEKLFILQKSLNPQNDRVYAASMEDISTEKIAVERFQNTTSVMVWGA
FT                 ISEKGKLPLLFIDKGVKINAKYYLDEVLVGHFYPHASKLFGNKPFCFQQDS
FT                 APAHKAKTVQHWCKDNIPCFMAVDEWPPSSPDLNPLDFCIWGYMLDRLKDL
FT                 KKMNLEKFKRHLTKIWNEIPDDVVRAACNSFKKRLKLARKYKGERLELKS"
XX
SQ   Sequence 1304 BP; 432 A; 218 C; 284 G; 370 T; 0 other;
     cagcgtgggc ccaaataact gtcgcacttt ttcaaagctt cggcactctt aaacaagtgc        60
     ttctattctt tttgtttttt catttcttct ttctttatct tatttcgtaa ctaacggggt       120
     ttattgctga taagatcagt gcaagttaga attttggcga cgatggaagc aaaacgggag       180
     ctagtgcaaa acttgcattt gcaaggaaaa aaaacaagtg aaattgtgaa gttgctaaaa       240
     aatctcaatg tgaataggcg atttgttcag cgcactgtgg ctcgattgaa ggcaactgga       300
     agtgttgata tagccaaaaa aactggtcgg aaaagaagtg ttagaacccc taaaataata       360
     aagaatgtgc gtgaaagaat taggcgaaat tgtgcgaggt cagctcgaaa actagccaat       420
     gagctgaatg tgagccgcaa aacaattaga aacatcataa aagatgactt gggactgaaa       480
     ccttacaaaa aaaaaagaat tcatggtctg acagaacgtc aaaaaaaaat gcgacaggaa       540
     agaagtgggc agttacttcg gcggcacgca ggttgcaata ctgtgttttc tgatgaaaag       600
     ttgttcatat tgcaaaaaag cctgaacccg cagaatgatc gggtgtatgc agcaagtatg       660
     gaggatattt caacagaaaa aattgctgtt gagagattcc aaaacacaac gtctgtcatg       720
     gtttgggggg ccatatctga aaaaggtaag ttaccccttc tttttatcga taaaggcgtg       780
     aaaatcaatg ccaaatatta tttggatgaa gtgcttgtgg gccattttta tccccatgca       840
     tcaaagctgt tcgggaataa gccattttgc ttccagcaag actctgctcc ggctcataag       900
     gccaaaactg ttcagcactg gtgcaaagat aacattccat gtttcatggc tgttgatgag       960
     tggcctccat cgtcaccaga tctaaatcct ttagacttct gcatatgggg ttacatgctg      1020
     gatagactaa aggatttaaa aaagatgaat ttggaaaagt ttaagcgaca cttgacaaaa      1080
     atttggaatg aaattcctga tgatgtggtg cgtgccgctt gcaatagttt taagaaacgt      1140
     ttgaagctcg cccgaaaata caaaggggaa agattagaac ttaagtctta gtaatgtaag      1200
     ctatattaat atatattaaa taaataatat ttgttactta aaatatctca tggtttgttt      1260
     tttatttcaa aaattaagtg cgacagttat ttgggcccac cctg                       1304
//
ID   Mariner-13_DF repbase;    DNA;    INV; 1352 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-13_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1352
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 780-780 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1352 BP; 454 A; 262 C; 281 G; 355 T; 0 other;
     cactcgcccg catatctctg cgtacacccc aaaaaaattt caaaatctaa ctttaaaccc        60
     tagctgttcg gccatttatg cagatattca acccattctt tttttaaaca aaattataat       120
     ttattgtctt cattgacgta ttttttttta cagagtcgta cagcgctttt caacttcgtg       180
     gaatgcagga ttgtgcgatt accgttaatt ttgtcgtcgc cgatctactt tagaatgtct       240
     aaaaatagat tttactctgt taaaatgaaa ctctgtcatt acaataacga gcatattgca       300
     agatggagca aaaaggcaag gaaatttctg ttgaggagcg gaaaattata ctaaaaggtt       360
     ttttggatgg aaaatcttat agagaaattg gtgctttagt tggtagaacc cactcatcca       420
     tccaaagagt gataaataat tacaactcga ctggaagtat cctgccaaag gctcgttctg       480
     gccgaccgcc tttgcttaca atccgcgagc agaggaatat tgtcaaatct atccagctca       540
     acccaaggac gacagctcat caggcaaagc tacaggtcga ggatagtttt tccaaaacag       600
     tttccgagga tactgtacgc cgggtcataa aaaaggctgg ctaccacagc agagtcgccc       660
     gcaaaaaacc tcacatatcg gaagtcaata gacaaaaacg cctaaccttt gcaatgacta       720
     tatttccaaa aaccaagact tctggaacaa ggttattttt tccgacgaaa gtaaattctg       780
     catatttgga atcaagggaa aggttttggt atggaggaaa agcggagaag cctttaataa       840
     agaaaatttg gttggcacag taaagcacgg aggaagcgga attatggtgt gggggtgtat       900
     ggcagcaagt ggcgttggaa agttggtatt tatcgagtca ataatggatc aaaaaatcta       960
     tattgacatt ttaaaaaaca atttaaaaga aagtgctgag aaattagggc tcgaaagtga      1020
     atactggttc caacaagaca acgacccgaa gcacacggca cagaatacca agctttggct      1080
     gctgtataat gtcaaaaatc agctgcgaac ccctccccag agtcctgatc taaaccccat      1140
     tgagcatttg tgggatcttc ttgagaggaa aatccgaaaa cacacgatta catcaaaaaa      1200
     aatgctcaag gatgtgattc tggaggagtg ggggaaaatt actgcagatg aaaccaaaaa      1260
     cctagtggat tccatgccga gacgcctcac ggaagttttg cagcggagag gataccctac      1320
     cagttattaa aaataatatt atttacgttt aa                                    1352
//
ID   Mariner-13_DK repbase;    DNA;    INV; 1635 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-13_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1635
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1206-1206 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. ~780-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           745..1248
FT                 /product="Mariner-13_DK_1p"
FT                 /note="transposase."
FT                 /translation="MFNDLFRVCLIVWSDESKFNVFGSDGKPYVQRPPNKQ
FT                 LDPKYTRKTVKHGGSSIMVWGCFTASGVGLQKKIEGIMNGEMYRDILINNL
FT                 SGEYADNLPLAWIFQQDNDPKHTSKIVKSWLSQETINVLQWLPQIPDLNPI
FT                 ENLWGILKQVVGQKKQQKKNDFGIFCRKS"
FT   CDS           891..388
FT                 /product="Mariner-13_DK_2p"
FT                 /note="transposase."
FT                 /translation="MFNGLSRVFGVQLFVGRTLYIWFTITPKDIKLGFVAP
FT                 NNQTYTKKIVKHGGASIMVWGCFTASGVGLQKKIEGIMNGEMYRDILINNL
FT                 SGEYADNLPLAWIFQQDNDPKHTSKIVKSWLSQETINVLQWLPQIPDLNPI
FT                 ENLWGILKQVVGQKKQQKKNDFGIFCRKS"
XX
SQ   Sequence 1635 BP; 505 A; 313 C; 313 G; 503 T; 1 other;
     cagtggtgct catagactta agccacaaga cttcawccaa gaattttaac gaaaattaag        60
     aaaagttttt attccacagc tccaattatt tgtgtcacat tagttctata tatcagtgtt       120
     ctaataaaag aataaccaag ttataaaaat atatattcaa cgaaaaatta aaaaaatctg       180
     agaccaaccc caaaatgtcc tgctcacata cttaagccac ctggaagaaa atgatccaaa       240
     aagttaaaat ttgcccaata ttccttataa ttttaataaa tttagtttaa tattaagtgg       300
     gatgaccttt ctgattaaga acagcggagc aacgctttgg cattaagccc acaagacgtg       360
     cgcactgttg aggggtgatt ttcttcaact cttcctgcaa aatatgccaa aatcgttttt       420
     tttttgctgt tttttttggc caacgacttg tttaagaata ccccacaagt tctctatagg       480
     gttcaagtcg gggatctgcg gtagccattg caaaacattg attgtctctt ggctaagcca       540
     cgacttgact atcttgctgg tgtgtttcgg gtcgttgtcc tgttgaaata tccaggcaag       600
     tggcaaatta tcggcatatt ctccagataa attgttaata aggatgtccc tgtacatttc       660
     gccgttcata atgccttcta tcttcttttg gagacctacg cccgatgcgg tgaaacagcc       720
     ccagaccata atcgaagcgc caccatgttt aacgatcttt ttcgtgtatg tttgattgtt       780
     tggagcgacg aatccaagtt taatgtcttt gggagtgatg gtaaaccata tgtacaacgt       840
     cctcccaaca aacaattgga ccccaaatac acgagaaaga ccgttaaaca tggtggctct       900
     tcgattatgg tctggggctg tttcaccgca tcgggcgtag gtctccaaaa gaagatagaa       960
     ggcattatga acggcgaaat gtacagggac atccttatta acaatttatc tggagaatat      1020
     gccgataatt tgccacttgc ctggatattt caacaggaca acgacccgaa acacaccagc      1080
     aagatagtca agtcgtggct tagccaagag acaatcaatg ttttgcaatg gctaccgcag      1140
     atccccgact tgaaccctat agagaacttg tggggtattc ttaaacaagt cgttggccaa      1200
     aaaaaacagc aaaaaaaaaa cgattttggc atattttgca ggaagagttg aagaaaatca      1260
     cccctcaaca gtgcgcacgt cttgtgggct taatgccaaa gcgttgctcc gctgttctta      1320
     atcagaaagg tcatcccact taatattaaa ctaaatttat taaaattata aggaatattg      1380
     ggcaaatttt aactttttgg atcattttct tccaggtggc ttaagtatgt gagcaggaca      1440
     ttttggggtt ggtctcagat ttttttaatt tttcgttgaa tatatatttt tataacttgg      1500
     ttattctttt attagaacac tgatatatag aactaatgtg acacaaataa ttggagctgt      1560
     ggaataaaaa cttttcttaa ttttcgttaa aattcttgga tgaagtcttg tggcttaagt      1620
     ctatgagcac cactg                                                       1635
//
ID   Mariner-13_DRh repbase;    DNA;    INV; 941 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-941
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1407-1407 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 941 BP; 273 A; 198 C; 222 G; 248 T; 0 other;
     cagggtccgg cactcgaagt gtaaccaact tcagaccgct cgctcagctg acgcacgggg        60
     atcagctgtc tgtaacttag ctaaatgaca gcttagagta ttgtttacaa gtgtacgaaa       120
     gcattttgct gatagtgaac cgaagcagcg tgaagtcaga cttgagagag tgaaggagtt       180
     gcttcgcttg gccgaaagcg gtcaacttcc gaacattgtg ttttctgacg agaaaatttt       240
     tacaattgag caattcgtaa actctcaaaa cgatagagtt tatttgacgg atcgttcatg       300
     cgagaatttg agtcatcgat tagccaccag gaggcagcac ccgccacaga taatggattg       360
     ggccgctgta accgcagatg ggcgctctcc aatcgttttt atcgagcctg gcgtcaaaat       420
     aaatgcgcaa tattatcggg aaagtattct gaaagttgct ttgaagccgt gggcagacaa       480
     tcatttcggt gacagaccat ggacgtttca acaggactca gcaccatctc acaaagctcg       540
     attgaaccaa gaatggctgg aaaacaacgt tccaaacttc ataacgtcca cacaatggct       600
     ctggaattca ccagacgcaa gtccgatgga ttattctctt tgggccattt tggagagcaa       660
     ggtccgcact aaaagataca ccagtctcga ggagcttaaa aaagccgttg tccgagagtg       720
     ggccaaaata cctgcaagtc acattcggcc agcttgcgat tcgtttttgg accgtctgaa       780
     gaccatagtc aaggcaaaag gtggtcatat cgagaaaaag tgaattgttt ctgaattttg       840
     tattattttt agacattttg tactttgaat tgagaaaaag taattttcca aactaaattt       900
     atggcttttt taagtggtta cacttcgagt gccggaccct g                           941
//
ID   Mariner-13_DSuz repbase;    DNA;    INV; 1652 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1652
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 136-136 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..1337
FT                 /product="Mariner-13_DSuz_1p"
FT                 /translation="MGRGKHCTEEKRDIIQKLIKDGKSYRVVGRLVGCLNK
FT                 MIKNALNYKEKPETRGRNQSMTPLHVNRLIRQSKKDPFKSATELKKELKIN
FT                 ATVQTVRTYLREHNLKACSPRKVPLLNARHISKRMKFAKDHANWSPDQWRN
FT                 ILRSGESKVIMFGGKGSRSYFRRPKNSEFKPQYTTRTIKHVGRSVMVWACF
FT                 SYYGVGPIHWIKAIMDQHVYVDIMDTIMLPFAEYEMPLVWVFQQDNDPKHT
FT                 SKKAKKRFGDNSVNVMEWPPKSPDLNPTENLWSDVKKAVAASKPTSIGSLW
FT                 GVIKESWTQISIKRCKNLVDPMPRRCADVISNKGYTTKY"
XX
SQ   Sequence 1652 BP; 564 A; 297 C; 314 G; 477 T; 0 other;
     cagtggcgaa aaaaataata gcaccacttc aatacatttt cttctgggta aaataaaatt        60
     gttttcagtg tttgtttttt ttcaacacaa aatttttttg tactctttag tattctttct       120
     aacgaaaaaa tgtgttacct tatttttaaa tcctgcctat aaatttattt ttaagtgttt       180
     tattaaaaaa gcccaaaaaa tggcgaaaaa aaatagcacc actacaacat ttattagcaa       240
     aaaccccata ttttgccgaa tagccttaat acaaagcacg ggtcaattaa atttatctat       300
     aatttcaata ttttgaacat aaaaagtttg ataataccat tgaaatggga cgtggaaagc       360
     attgcactga ggaaaagcgt gatatcatcc aaaagttgat aaaggatgga aaatcttaca       420
     gagtagttgg tcgattggtc ggatgtttaa ataaaatgat taagaacgct ctaaactata       480
     aagaaaaacc tgaaacacga ggacgaaacc aatctatgac cccccttcac gtcaatcgat       540
     tgattcgtca gagcaagaag gatcctttca aatctgctac tgagcttaaa aaggagctta       600
     aaataaatgc gacggtgcaa actgtgcgta catatctcag ggaacataac ctaaaagcct       660
     gcagcccgag aaaggtacca cttttaaatg ccagacatat ttctaagcga atgaagtttg       720
     ccaaggatca tgcaaattgg tcacccgatc agtggaggaa tattttacgg tcaggtgaga       780
     gcaaggtgat tatgtttggt ggaaaaggat ccagatcgta tttcagacgt ccaaagaact       840
     cggaatttaa gccccagtac accacaagga ccataaagca tgtagggcgt agtgtgatgg       900
     tatgggcctg cttttcctat tacggagtag gcccgataca ttggatcaag gccatcatgg       960
     atcagcacgt atacgtggat atcatggata ccattatgct acctttcgca gagtatgaaa      1020
     tgccgctcgt gtgggtcttc caacaagata atgaccccaa acataccagc aagaaggcaa      1080
     agaaaaggtt tggggacaac tctgtgaacg ttatggagtg gcctccgaag tctccagacc      1140
     ttaatccaac agagaatcta tggtcggacg tcaagaaggc agtcgctgca tcaaaaccaa      1200
     catccatcgg atccctttgg ggagtaatta aggagtcctg gactcaaatt tccataaagc      1260
     gatgcaagaa cctagttgac cccatgccaa gacgctgcgc agatgttatt tccaataaag      1320
     gatacaccac aaagtattaa atgaagaata taaacataga tttaacagtt caatattgtt      1380
     atctcatgaa tattggtagt tcctataatt ttaaacccat ttttgaaaag tggtgctatt      1440
     atttttttcg ttaagttttt caagttttaa taaagtttct taaataattt aaaaactaaa      1500
     aaagaaatca acattttttt ttcactttct gatactttgt tgcaattcga ttccaaaaag      1560
     gtattgcatg ttttgacaga gctaaaaata taggtagggt gactatccaa acattgctcg      1620
     agtaagtggt gctattattt ttttcgcagc tg                                    1652
//
ID   Mariner-13_HSal repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   07-DEC-2011 (Rel. 19.04, Created)
DT   07-DEC-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 853-853 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..1208
FT                 /product="Mariner-13_HSal_1p"
FT                 /translation="MESKEMRIIFLYEYKLGHSAAEATRNINTAFGEGSVS
FT                 DRTIRRWFEKFRSGDTNLDNLPRGHAPSVIDDNVLKDMVEADSRLSVRDIA
FT                 HSINVHYSTVSRHLKAMGKVKKLDKWVPHELTERDKLRRMEISSSLLSRHN
FT                 NEGILNRIVTCDEKWVLYDNRRRSAQWLDADQAPKHMPKPSLHPRKVMVSV
FT                 WWSAKGIVHFSFLKKGETINADKYCQEIDIVMEKLRIEQPALLNRRGMLLL
FT                 HDNARPHIAKKTVKTLTEYKCEVLPHPPYSPDLSPTDYHLFKHLDNFLSEK
FT                 VFQTESDVKNAFNEFLASRSSNFYVKGIDALVSRWGKCIEVEGDYFD"
XX
SQ   Sequence 1291 BP; 397 A; 246 C; 274 G; 374 T; 0 other;
     tattaggttg ttgcagatga aatggccgtt tttcaaaatt caaatttccc ggccgagtag        60
     ttcagctctt ttcatgcagc tgtcgttgca tgcgtgatat ttgaaaagta tatgccccac       120
     acgtaaattc gcacgcataa ccttactttt atcacattgt ttatatcgtt gaaaatcgct       180
     gtctcttcga catggaaagt aaggaaatgc ggataatatt cttgtacgaa tacaaacttg       240
     gtcatagtgc ggccgaggca acgcgaaaca taaacactgc ttttggggaa ggttctgtaa       300
     gtgatcgaac cattagacgt tggtttgaaa agtttcggtc tggtgataca aatctcgaca       360
     atttgcctcg cggccatgca ccatcagtga ttgatgacaa tgttttgaaa gacatggttg       420
     aagcagactc gcgtttatca gttcgagata ttgcacacag catcaacgtt cactattcca       480
     ctgtttcccg acacctaaag gccatgggga aagtgaaaaa gcttgacaaa tgggtaccac       540
     atgaactgac tgagagagac aagcttcgcc gtatggaaat cagctcatct ttgctttccc       600
     gacacaataa tgaaggaata ttgaatcgaa tagtaacgtg tgatgaaaag tgggttcttt       660
     atgacaatcg tcgacgttct gcccagtggt tagatgctga tcaagctccg aaacacatgc       720
     cgaaaccgag ccttcatcca cgtaaagtta tggtatctgt atggtggtct gccaagggta       780
     ttgtgcattt ttcgtttttg aaaaagggtg aaactataaa tgctgacaaa tattgccaag       840
     aaattgacat tgtgatggaa aaactgcgta ttgaacagcc ggcgttatta aatagacgcg       900
     gtatgttatt gctccatgat aatgctagac cgcatattgc aaaaaaaact gtaaaaacat       960
     taacagaata caaatgcgaa gttctccctc accctcctta ttctcctgac ctttctccaa      1020
     ctgattacca tttgtttaag catctggata actttttaag tgaaaaggta ttccaaacag      1080
     aaagcgacgt gaaaaatgcg ttcaacgaat ttcttgcatc tcgctcttct aatttctacg      1140
     tgaaaggcat tgatgcgctt gtatcacgtt gggggaagtg tattgaggtg gagggagact      1200
     atttcgattg acgagatgta tataaagtgt gtcgaataaa aatttaaatt aaaaattaaa      1260
     aaatggccat ttcatctgca acaacctaat a                                     1291
//
ID   Mariner-13_LHu repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1290
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 371-371 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           102..1208
FT                 /product="Mariner-13_LHu_1p"
FT                 /translation="MSAFKRSICHLIEVQTNIFFIALKMSNFVPEKRHLRE
FT                 VLLHYFFLKKSAAXSHRLLVEAYKEHAPSVSMXEKWFKRFRSNDFNLDDKE
FT                 HGKPPKKFEDAELEALLDEDSCQTEKELATALNVTQQCISLRLHAMGMVQK
FT                 QGNWVPHELKERDIERRKTMCELLLQRQKRKGFLHRIITGDEKWIHYDNPK
FT                 RKPAWVKPGEPGPSTPKRNIHGSKVMLCIWWNMKGVMYHELLQPSETITGE
FT                 RYRLQLIRLNRALKEKRPEWENRHDKVILQHDNARPHVHVSVKNYLEGVNW
FT                 EILPHPPYSPDIAPSDYYLFRSMALALSGERFNSYEEIKNCLDNWTASKQP
FT                 DFYQRGIRLLPERWAKIVASDGAYFE"
XX
SQ   Sequence 1290 BP; 431 A; 226 C; 271 G; 359 T; 3 other;
     ttgggtgtac aagtatgact ttacggattt tcaatagaat tgcataagac gtactstcgg        60
     cattacatga agctggcaat atatgtattt aaaaggtctg tatgtcagct ttcaaacgta       120
     gtatatgtca tttgattgaa gtgcaaacaa atattttttt tatcgcattg aaaatgtcga       180
     attttgtacc agaaaaacgt catttgcgtg aagttttgct tcattatttt tttttaaaga       240
     aaagtgcagc tgawagtcat cgtttgcttg tggaagctta caaagaacat gctccatcgg       300
     taagcatgkg tgaaaaatgg tttaaacgat tcagaagcaa tgattttaat ttggatgata       360
     aagaacatgg aaaaccaccg aaaaaatttg aagatgcaga attggaagca ttacttgacg       420
     aggattcatg tcaaacagaa aaggaattgg caacagcatt aaatgttacc caacaatgca       480
     tttccttacg tctgcatgca atgggaatgg ttcaaaagca aggaaattgg gtgccacacg       540
     aattgaaaga aagagacatt gaaagaagaa aaaccatgtg cgaattgttg ctgcaacgac       600
     aaaaaagaaa gggtttttta catcgaatta ttactggtga tgaaaagtgg attcactacg       660
     acaatcctaa acgcaaacca gcatgggtta agccaggtga accaggtcca tcaacgccaa       720
     agcgaaacat ccatggcagc aaggttatgc tgtgtatctg gtggaatatg aagggtgtga       780
     tgtatcatga gctgctgcaa ccgtctgaaa ctatcactgg tgaacgctat cgactacaat       840
     taatacgttt gaaccgagct ctgaaggaaa aacgaccgga atgggagaat agacatgaca       900
     aggtgatttt acagcatgac aacgccagac cacatgttca tgtatccgtc aagaattatc       960
     tagaaggagt gaactgggag attctacctc acccgccgta ttcaccagac attgctcctt      1020
     cagattacta tttgtttcgg tccatggcgt tagctctttc tggagagcgg ttcaattctt      1080
     atgaagaaat caaaaattgc cttgataact ggaccgcttc aaaacaacca gacttctacc      1140
     agcgtggaat ccgtttattg cccgaaagat gggccaagat tgtagcttcc gatggagcat      1200
     actttgaata aaataaaaat gatttttatg ttccaaatca atgtgttttt ttatccaaaa      1260
     atccgtaaag tcatacttgt acaccatatt                                       1290
//
ID   Mariner-13_LMi repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3253-3253 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           189..1262
FT                 /product="Mariner-13_LMi_1p"
FT                 /translation="MEVTREEQYAALKFCFRLKKSSAEAYTMLQEAYGESV
FT                 LPYSTARRWFKMFKEGRQSISKEGGPGAPVTALTEENINTAAVIVKEDRRI
FT                 TLRSLSEILNISLGATHTLVTETLHMRRVCARWVPRLLIPEQKDIRVQVCM
FT                 QLKLMLEEDPEFLSNVITADETWLHHFDPESKQQSSVWKSPSSPTPKKAKV
FT                 VASAGKVMVISFFDIHGMVYQHVVPAHTSVTGQYYRDVLKTLQVHIRRKRP
FT                 HFREAGWMLHHDNARPHIANVVAEYLAKINVKCIPHPPYSPDLAPCDFFLF
FT                 PNLKKRLRGRHYPSSEAVVKAAEAILKDLSKNGFQHVFEDWQKRWDKCIAF
FT                 MGDYFEKDHQNYEDE"
XX
SQ   Sequence 1312 BP; 380 A; 278 C; 299 G; 355 T; 0 other;
     cgagggctgt tcaataaaga atgatatttt tttacgtcat aatttcccgc gctaaaattt        60
     aatcttatga tattctgtta gcttaatgtg aaacaatcac gccgtagtag tttcattgtt       120
     gggactcccg gttcccgcct gtgagaggca ggcaagttca gacatgttca gtatcgccta       180
     ccgctgcaat ggaggtaaca cgcgaggaac aatacgcggc tttgaaattc tgctttcgtc       240
     tcaagaaatc ttcagctgag gcctatacaa tgttacagga ggcatatgga gagtctgttc       300
     ttccctacag cacagctcga aggtggttta aaatgtttaa agaggggaga caatcaattt       360
     caaaggaagg tggacccggt gctccagtta ctgctcttac ggaagaaaac atcaacactg       420
     ctgctgtcat tgtgaaagag gatcgacgaa ttaccctaag atcactttct gaaatactga       480
     acatttcatt gggtgccacc cacacgttgg tgacagaaac attacacatg agacgtgttt       540
     gtgcgcgatg ggttccaaga ctgttgattc ccgaacaaaa ggacattcgc gtgcaggtct       600
     gcatgcagtt aaagttgatg ttagaggaag atccggagtt tctttcaaat gtaatcactg       660
     ctgatgaaac ttggctacat cattttgatc ctgagagcaa acagcaaagc tcagtgtgga       720
     aatctccttc atcaccaacc cccaaaaaag caaaagtggt tgcttctgct gggaaagtta       780
     tggtcatctc attctttgat attcatggaa tggtttatca gcatgtcgta cctgcacaca       840
     catcagtaac tggacaatac tacagggatg tcctgaaaac attgcaagtc catatcaggc       900
     gcaaaagacc acatttccgt gaagcaggct ggatgctgca ccacgataat gcgcggccgc       960
     atattgccaa tgttgttgct gaatatcttg caaaaatcaa cgtgaagtgc atccctcacc      1020
     ctccctatag tccggattta gccccatgtg acttttttct attccctaac ttgaagaaac      1080
     gccttcgtgg gaggcattat ccatcatcag aagcagtggt gaaggctgcg gaggcgattt      1140
     tgaaggacct ctcaaaaaat ggtttccagc atgtatttga agactggcag aaacgctggg      1200
     acaagtgcat cgcattcatg ggagactatt ttgagaagga ccatcaaaat tatgaggatg      1260
     agtaaaggta tgttgtaaaa aattatgatc attctttatt gaacagccct cg              1312
//
ID   Mariner-13_PBa repbase;    DNA;    INV; 1050 BP.
XX
AC   .
XX
DT   22-MAY-2012 (Rel. 19.03, Created)
DT   22-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-13_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1050
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 626-626 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. TA TSDs.
XX
SQ   Sequence 1050 BP; 370 A; 155 C; 154 G; 370 T; 1 other;
     cagggtgtcc cacaactcgc gaccgaaatt tttatgacat attcctgact taaaaataag        60
     acgaaaattc taatacgaaa atgccgaggc tataatagtt tttaaattaa tagcgattaa       120
     agtcgactaa tcatagagct aacatttcgc gcgctcaggc atgatgatat aacaagtgat       180
     aaaggcgcta ccacgagggc cctcttaacg tcaatcgaga ttattataca aatatattga       240
     tatgatatac tattatattt ttattgagaa attatttttg cttttttacg aaacctattt       300
     gtatattaca tacgtataat taataccgga acatatcaca aaatatcaat atcaattcaa       360
     tagcgagata ttacgacatg tgttaagtat cgatataaat aacgttgaaa tacaatgata       420
     atgaaatatt tcattaatta gatcatatct aagcatagaa aataagtaca ctgcctatgc       480
     gttgtattta atcataatca tataacgaaa tgtcaaaatt tgacatatca tacgasagac       540
     tctctcgtat gatatgtcaa attttgacat ttcattatat gaggcaatgt acttattttt       600
     tatgcttaga tataattaat gaaatatttc attatcattg tattttaacg ttatttatat       660
     cgatattaac aatgtcgtaa tatctcgcta ttgaattgat attgatattt tgtagtacgt       720
     tccggtatta attacacata tgtaatatac aaataggttt cgtaaaaaag caaaaataat       780
     ttctcaataa aaatataata gtatatcata tcaatatatt tgtataataa tctcgattga       840
     cgttaagagg gccctcgtgg tagcgccttt atcacttgtt atatcatcat gtctgagcgc       900
     gcgaaatgtt agctctatga ttagtcgact ttaatcgcta ttaatttaaa aactattata       960
     gcctcggcat tttcgtatta gaattttcgt cttattttta agtcaggaat atgtcataaa      1020
     aatttcggtc gcgagttgtg ggacaccctg                                       1050
//
ID   Mariner-13_RPr repbase;    DNA;    INV; 1658 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   25-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1658
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3260-3260 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..1458
FT                 /product="Mariner-13_RPr_1p"
FT                 /translation="MPRTYSNVEYADMVFVYGFCDGNAVEAVREYARRFPN
FT                 RRVPDRRVITMTFNRLRETGSFSIHQDPLRANLQENCILHHFDNNPETSVR
FT                 RASAALQVPRQTIWRTLKDDNRHPYHIQRVQNLLPEDYFKRLNFSNWYLEQ
FT                 FNNDNSFPSKIMWTDEATFTRRGIMNQRNCHIWADENPRAVREWRFQHEFA
FT                 VNVWLGILNESVVGPFFLPRRLNAARYTDFLENELLNYLEDINLQQRIEMW
FT                 FQLDGCPAHYGRATRAWLDNHYPRRWIGRGGVVSWPPRSPDLTPLDFFAWG
FT                 LLKQEVYSLPINSREQLQDRIVAAVHQISPNQCLAATRAVRTRCNACIAAR
FT                 GQHFEQYLH"
XX
SQ   Sequence 1658 BP; 493 A; 312 C; 347 G; 506 T; 0 other;
     cagggtgtcc cgaatttaaa tgtcataact tcgggagcgt gtaggggatc gataaactaa        60
     aagaaaaagt ggtatagaga tatgctcgtt tttgcttcgt tttggagaaa atcgcaaaaa       120
     acataaaacg tagtttttat ttctgtactt atttattact ttttaattca tatttatttg       180
     ttcgcgttgt cacttgccta atgtaaatat tgttttgttc aaaatatttt gccctcttgc       240
     agcaatgact catcgttctg gcattcattg aaatcgtaca cggaaacaat aatattccgt       300
     tttttggtaa aagctttttt gtttgtttac atttctgcct ttctcctata aattcgtcag       360
     ttactcatca gaagccatcg agtgaattac ttctgttaca atatgccgcg tacatattct       420
     aacgttgaat atgctgatat ggttttcgtg tatggtttct gcgacggtaa tgctgtggag       480
     gcggtgcgag agtatgcgcg ccgatttcca aatagaagag tgccggatcg gcgagtcatt       540
     acgatgactt ttaataggct gcgagagacc ggctcatttt caattcatca agatccgtta       600
     agagccaatt tgcaagaaaa ttgtattctg caccattttg ataacaaccc tgagaccagc       660
     gttcggagag catcagctgc attacaagtg ccgcggcaga caatctggcg aactttgaaa       720
     gatgataacc gccacccgta tcacattcaa agggtgcaga atttattacc tgaggattat       780
     tttaagaggt tgaattttag taattggtat cttgagcaat ttaataatga taattccttt       840
     ccatcaaaaa taatgtggac ggatgaagct acgtttacaa gaagaggaat tatgaatcaa       900
     agaaattgtc atatatgggc tgatgaaaat ccacgggctg ttagggaatg gaggttccag       960
     catgaatttg ctgttaacgt ttggctcgga attttgaacg agtctgtagt gggaccattt      1020
     tttttacccc gcagattaaa tgcagccaga tatacagact ttttggagaa cgagttgctt      1080
     aattatttag aagatatcaa cctgcagcaa cgcatcgaaa tgtggttcca gctcgatggg      1140
     tgtccagctc attatggcag agctactcga gcttggctag acaaccatta tccacgaaga      1200
     tggattggac gtggaggagt agtatcttgg ccaccccgat cgcctgatct gacaccactg      1260
     gacttttttg catggggtct cctgaagcag gaagtttatt cgttaccaat caactcaaga      1320
     gagcaattac aagaccgaat cgtggctgca gtacaccaaa tatcaccaaa tcagtgtttg      1380
     gctgcaacac gagctgtccg tactagatgc aatgcttgca ttgctgcaag agggcaacat      1440
     tttgaacaat atttacatta ggcaagtgac aacgcgaaca aataaatatg aattaaaaag      1500
     taataaataa gtacagaaat aaaaactacg ttttatgttt tttgcgattt tctccaaaac      1560
     gaagcaaaaa cgagcatatc tctataccac tttttctttt agtttatcga tcccctacac      1620
     gctcccgaag ttatgacatt taaattcggg acacccag                              1658
//
ID   Mariner-13_SIn repbase;    DNA;    INV; 2395 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-13_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2395
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 329-329 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. ~460bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           840..1907
FT                 /product="Mariner-13_SIn_1p"
FT                 /translation="MPDYTLNEIIDIVLVLGECHNNYRQAAVLYRNRFPHR
FT                 RHPNHCTISRLVLRQRQRQRQKRQRRRINVPERDDPTVLAVLGMIAINPRV
FT                 STRQIERELGIPKSTSHRILTTHNFHPYHITLTQQLTLNDFQQRLEFCRWA
FT                 QIMLNRDRMFFRFVLFSDEATFHNTGQLNRHNSHYWSVENPRWYREVNHQH
FT                 RWSLIVWCGILNGNLIGPYFFDENVNGNNYLHFLQQRLPALLEDIDLDTRQ
FT                 RMFFQQDGAPAHWSRRVRNHLNLTFPGRWIGRGGPVSWCPRSPDLSSLDFF
FT                 LWGYLKNVVYSKTPTTRENMMERITLACRSIPRNILLLTVDSFERRVQLCV
FT                 DNNGQIFEHLLRS"
XX
SQ   Sequence 2395 BP; 713 A; 497 C; 489 G; 696 T; 0 other;
     cagggtgtcc cattttaaat gatccagcca aatatctcga aaactaaacc cagtagacaa        60
     aaatgtttca gacaaaagtt gtatgatttc gagggggaca taagatggtg tcattaattt       120
     gaccttgaat agttgcttga aggtcacgtg aaggtcacct tcaatttttt taatggaact       180
     gcctattttt tattgcatat tcttgtagct tatctcgaga cctttccaaa acactataat       240
     tttttctttt ttcgttaagt atttttcgag ttacaagact tgaaagtcat aataccgccg       300
     gcattagcgt tattcgagat gtaccacatg gaggttgcca cggtcagatg tacatcccgc       360
     gcgcgtgcgt gcgtgtgtgt gtgtgtgtgt gcgtgcgcgc gtgtgtgcgt gtgtgtcggg       420
     actgatccgg ccgattaaag caagatcggg actgatccgg acgctgacag cctgacactg       480
     cttatttccg cgttttgcgc atgcgccacc gattcacacc gacttctcct gctttttcgt       540
     cgaatggttt ggtggcacac ggtgtgacac tctacgcgtt tccgaatgag ctcaccggaa       600
     cgcacaccga gtactcacgg gtgtttccga acggctagtg tgcattagtg gcacactagt       660
     gtgtgtttcc gaacgcagtc taagataccg tatcttaatc catccaaccg ggattgatcc       720
     ataatggctg atggcaaagt ttgatcagta aatgcgtaaa tttgccttag tcgtccaata       780
     tcaaccagga taataaatct atcggctctt actttatttt gtaacttaat gtacgcaaaa       840
     tgccggatta tactttgaac gaaattattg atattgttct ggtacttgga gaatgccata       900
     ataattatcg acaagcagcg gtattgtacc gtaatcgatt tcctcataga cgacatccaa       960
     atcattgtac gatttccaga cttgtattgc gtcaacggca acgtcaacgt caaaaacgac      1020
     aaagacgtcg tattaacgta ccagaaaggg atgatccaac agtacttgcc gtattgggaa      1080
     tgatagctat taatccacgc gtgtcaacga ggcaaatcga aagagaatta ggtattccga      1140
     aatcaacaag tcacaggatc ttgaccactc ataacttcca tccttaccat atcactctga      1200
     cacaacaatt aacactcaat gattttcaac aaagactaga attttgtaga tgggcacaaa      1260
     taatgttaaa tcgtgatcga atgtttttca gatttgtttt atttagtgac gaagcaactt      1320
     ttcacaacac tggacaatta aatcgacata attctcatta ttggtctgtt gaaaacccac      1380
     gttggtatag agaagttaat catcaacatc gctggagcct cattgtatgg tgtggcatat      1440
     taaacggaaa ccttatcggc ccttatttct ttgacgaaaa tgttaatggt aataattatt      1500
     tacactttct acaacaaaga ttgccggcat tgcttgaaga tatcgatctg gatacaagac      1560
     aacgtatgtt ctttcaacag gatggtgcgc ctgcgcactg gagtagaaga gttagaaacc      1620
     atttaaatct cacatttccg ggtagatgga taggacgcgg tggaccagtg tcatggtgtc      1680
     ctagatctcc agacttgtca agtctagatt tctttttatg gggatacttg aaaaacgtag      1740
     tatattcaaa aacacccaca acaagagaga atatgatgga gcgtataact cttgcctgcc      1800
     gtagcattcc aagaaatata cttttattga cagttgacag ttttgaacgt cgagtccaat      1860
     tatgtgtgga taataatgga cagatattcg aacacttatt aagatcataa tcctttcaca      1920
     tgaaaactag attctgatat gaatcggccg gatcagtccc gatcttgctt taatcggccg      1980
     gatcagtccc gacacacgca cgcacacaca cacacacgca cgcacacacg cacacacggg      2040
     atgtacatct gaccgtggca acctccatgt ggtacatctc gaataacgct aatgccggcg      2100
     gtattatgac tttcaagtct tgtaactcga aaaatactta acgaaaaaag aaaaaattat      2160
     agtgttttgg aaaggtctcg agataagcta caagaatatg caataaaaaa taggcagttc      2220
     cattaaaaaa attgaaggtg accttcacgt gaccttcaag caactattca aggtcaaatt      2280
     aatgacacca tcttatgtcc ccctcgaaat catacaactt ttgtctgaaa catttttgtc      2340
     tactgggttt agttttcgag atatttggct ggatcattta aaatgggaca ccctg           2395
//
ID   Mariner-14_ACe repbase;    DNA;    INV; 1207 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-14_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1207
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 524-524 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to the consensus. The 3'-end is uncertain. The 5'
CC   TA TSD is included.
XX
SQ   Sequence 1207 BP; 394 A; 214 C; 202 G; 397 T; 0 other;
     tacagggtga ttcagaataa acgtccttaa agtgtcatat tcctgactta attctaagac        60
     gatttttcct ttgcgaaaat tttgtctgaa gcttagtttt caaattacaa gaagaaatag       120
     cgtatcacgt agaggagacg ggcaggagcg gcgctcacgg ttagacgcga gcgctttacg       180
     cgcggggcgc aatcggacgc attcacacgt ttataaaaac acgtttcttc ttacttttcc       240
     cctctaccac actatctctt tgtctttcac atactttaaa tatgctaatt tcgttaaatt       300
     ataaattaga atgatgaaat taaaatgaat attgaaccct ttgagtatcg gattgttttt       360
     taattacatt gataaaattg ttagagaaat gtcgtaaaag agcgaaatta gacaataatt       420
     acgtgcgata agcacataat taaaactatt attgacatac aaatcaaaca attatttcag       480
     tacgtcgaat tctaagagcg tttcttacaa ttcgacgtac tgaaatactt gttagactta       540
     attgtatgtc aataggcgtt acaatacttg tagcacgcaa ttattgtcca atttctcact       600
     tttacaaaaa tttctctaac aattttatct gcgctatcgc gctcgtagca tttattacat       660
     acttatgaga agtcttatga gaaacgcgat cgcgcttctt agcatcaaag agttatgaat       720
     gtttaaaaca aaaacgtaag ccaaatacac tttaaaagct tattattatc ttaattataa       780
     aattgttatt accttgtaga tgttcaatga ttccattttg ctctagtttc ttgaaacagt       840
     cggaggaata agtttggatg caccgtaata gtgctcgaca caacggttta ctgtaattca       900
     ctttcttcac tcaaatatta aatgtctttt aagtacgtag atatcaagtc acacgttttc       960
     acgatgagat tcttctttta taaattgtgt cacgtttcaa catattgata cacttcactt      1020
     gataaaacga ggaatttatt aattaatcac tgacaatcac aaacgattga ttattcggcg      1080
     attgaaaatc acacgaagaa agaaacacgt ctgtaagtcc gtatacaagt aacaacacaa      1140
     catgtgttta cgtgcggcaa gcagctgact gactttcttg gttatgggtg cagtgagtgc      1200
     agttcac                                                                1207
//
ID   Mariner-14_AEc repbase;    DNA;    INV; 1310 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1310
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 557-557 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           306..1181
FT                 /product="Mariner-14_AEc_1p"
FT                 /translation="MPARKSHSKERTARTPAVVERAQALISDDPGQSLRKL
FT                 ASIVGVSEPTMRRIAEEDLRYKSYTLKIRQMLSEAARTSRVARCNLLLCSL
FT                 KNEASGRIRFFSDEKIFTVDAKINRRNDRWLAYNPEDVPVVARTKFPANVH
FT                 VLGVVSSEGDVMPPHFFKKGETVTKEVYLRVLMDVVKPWMETVASGRPYVF
FT                 QQDGAPAHTSHLIQNWLSDNVDMFWSKEFWPPNSPDLNPLDYYVWSVVERV
FT                 TNKSRHPNVTSLRTAIEAAFVGMDSATLQRACERFRPRIEAVIQANGGYIE
FT                 "
XX
SQ   Sequence 1310 BP; 358 A; 288 C; 329 G; 335 T; 0 other;
     tacagggtgc gtcaccaaaa tccggacaaa tttcaattta aattttccgc tatattgtgc        60
     ctccgccaga gttgttgttg gcgtccgaga aagcctgatg cttctagtaa acagtcatat       120
     tctcaaaatg gccgcgatgt tgaaaccaag tgcggagtat aatcgaagag ccgcgatcat       180
     cgaaggcctt cgcgctgggc gctcagcaac ggaaataatt cggttctttg gatatcccga       240
     gatcaaccgt ttatgacgtt gtggcaaaat atacggcttt agaacagtcc aacgaaggtt       300
     ccagtatgcc agcgaggaag agtcactcga aagaacgcac cgcgaggacc cccgcagtcg       360
     ttgaaagggc tcaagcgctg atttcggatg acccagggca atcgttgcga aaattagcat       420
     cgattgttgg tgtaagcgag ccaacaatgc gtcgaattgc cgaggaggac cttcgataca       480
     aatcgtacac attaaagata cgacagatgc tctctgaggc tgccaggaca agccgagttg       540
     ctcgctgcaa tctgctattg tgttctttga aaaacgaagc gtcgggacga atcaggttct       600
     tttctgacga aaaaattttt actgttgatg ccaaaatcaa ccggaggaat gaccgatggc       660
     tcgcctacaa ccccgaggat gtccctgttg ttgccagaac gaaatttccg gccaatgttc       720
     acgtgctagg tgttgtgtcc agtgagggtg atgtcatgcc accacatttc tttaaaaaag       780
     gggaaactgt cacaaaagaa gtgtatttgc gcgttctgat ggatgtagtg aagccgtgga       840
     tggaaactgt ggcgtccgga aggccatatg tttttcagca ggacggtgca ccggctcata       900
     cgagtcattt gattcaaaat tggctctcag acaacgtcga tatgttttgg tccaaggaat       960
     tctggcctcc caacagccca gatttaaatc ccttggacta ctacgtatgg agcgtagttg      1020
     aaagggtcac aaacaagtct cggcatccca atgtgacgtc attaaggacc gctattgagg      1080
     cagcattcgt cggcatggac agcgctacat tacagcgtgc gtgcgaacgc ttcagaccga      1140
     gaatagaggc cgtcattcaa gctaatgggg gatatatcga ataattgtgc tctacaggga      1200
     tcccccaagt gccatgtaaa aggatttttt gtaatattta atttttcatt aaaaacattt      1260
     tgtttaaaga aattgttcga tttgtccgga ttttggtgac gcaccctgta                 1310
//
ID   Mariner-14_CFl repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-14_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1292
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 818-818 (2014).
XX
DR   [2] (Consensus)
XX
CC   single copy in the genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1202
FT                 /product="Mariner-14_CFl_1p"
FT                 /translation="MEKEQYRSVIRFLFLDGKKCEEIKAKLDAVYGDTSPS
FT                 MTTVRYWFNEFKRGRTSVFDEERPGRPADVVTEEIIQKVHDMILADRRTKV
FT                 REVAEAIGVSTGTAINILHDKLAMKKLSARWVPRLLTVDNKRMRLLTSKQC
FT                 LEQFKRNPKEFLRRVVTVDETWIHHYTPETKQQSKQWISPGESAPKKAKTV
FT                 PSAGKVMATIFWDANGVILMDFLEKGRTITGQYYSELLDRFDKKLKETRPH
FT                 LAKKKVLFHHDNAPAHSSGVVVAKLHELRYELLPHPPYSPDLAPCDFFLFP
FT                 NMKKWLAGKKFSSNEEVIAETEAYFGEFDKSYFLEGLKNGRNVGRSVSF"
XX
SQ   Sequence 1292 BP; 378 A; 254 C; 329 G; 331 T; 0 other;
     cgagggcggt tcaataagta cccgtgtttg acgacaaagg gcgttcctga gggaagttgg        60
     tgttatcatc gtgtgctgtc atctatcaaa cgacggcaaa acaaatttca gactgattga       120
     taggttagtt tggatttgcc agccattcga gtaagacgtg tttcgtgatt ttcgctaaga       180
     tggaaaaaga gcagtatcgt tcggtaattc gctttttgtt tttggatggg aaaaaatgcg       240
     aggagataaa agcaaagttg gatgctgttt atggggacac ttcaccatct atgaccacag       300
     ttagatattg gttcaacgaa tttaaacgtg ggcgaacatc cgtttttgat gaggagcgac       360
     cagggcgccc ggcagacgtg gttaccgagg aaatcattca aaaagtgcac gacatgattc       420
     tcgctgatcg acgaacgaaa gtgcgcgaag tagcagaggc cataggtgtg tcgaccggaa       480
     cggcaattaa tattttacat gataagttgg cgatgaaaaa attgtcggcc cgatgggtgc       540
     cgcgattgct cacggtggac aacaagcgga tgcggctgtt aacttcgaag cagtgtttgg       600
     agcaatttaa gcgaaatccg aaggagtttt tgcgtcgagt tgtcaccgtt gatgaaacct       660
     ggattcatca ttacacacca gaaactaagc aacaatcaaa acaatggatt tctcccggtg       720
     aatctgctcc aaagaaggcg aagacggtcc catcggccgg aaaggtcatg gcgacgattt       780
     tttgggatgc aaacggcgtc atcctcatgg attttttaga aaaaggaaga acgatcactg       840
     gacaatacta cagtgagtta ttggaccgct tcgacaaaaa attgaaggag acacggccgc       900
     atttggcgaa aaaaaaggtg ctgtttcacc acgacaacgc accagcacat tcatccggag       960
     ttgtcgtcgc caaactgcat gaattgcgtt atgaattgct gccacacccc ccgtattctc      1020
     ccgatctggc tccctgcgac tttttcttgt tccctaacat gaagaaatgg ctcgcgggaa      1080
     aaaaatttag ttcgaacgag gaagtcatcg ccgagacaga ggcgtatttt ggagagttcg      1140
     acaaatccta ttttttggag gggttaaaaa atggcaggaa cgttgggaga agtgtatctt      1200
     tctaaaaggg gactatgttg aaaaataaaa aaaatttttt tttaaaaatc gtgtcttcat      1260
     ttctaacacg ggtacttatt gaaccaccct cg                                    1292
//
ID   Mariner-14_DAn repbase;    DNA;    INV; 1681 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1681
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 270-270 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 29-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(425..1015,943..1203)
FT                 /product="Mariner-14_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MRTSLQDRFKTAVQIRSEVHEQFSKDISERTVQRRLN
FT                 STGMLAGSPAKQPLLNPRMKKNRLNWAKDKENWTASDWSRVLFSDESKFNL
FT                 IGSDGILKVRRKRGERYSANCCIATVKHSPYVMVWGCISKYKTESILMVQG
FT                 MVNAEKYKEIILSGVVPSIESISEEEEKPIFQDDSAPCYRARSLSYSVSDC
FT                 YQNNLFSFCTMLSSAISELFSVRLLSKQLIQLNLTFFYLKITNLKEKLGIK
FT                 SLDWPGNSPDLNPIQNFWAYMGAKIRKQKPKTMEELKQIIEKV"
XX
SQ   Sequence 1681 BP; 594 A; 267 C; 321 G; 498 T; 1 other;
     cagtcagcgc cacaaaaaaa gccgcactta aaaaaaattt gaaattgtgc agtcactatg        60
     ctggggttct cctaaatttt attctctggg ccttattttt ttaggggggt ttcccttgac       120
     tattttcgac ataattttgt catttgaaga gcgctgttgc ttaagttgct tttggtagaa       180
     ttttttttgt aaagacacct ataaaatcat gccgaagcaa aagcagttca ctgatcgcga       240
     taaagaaaaa attattttat tggctgaaca aaatgtgtca aatcggcaaa tagcggctga       300
     aacacatttc aatgaaagct cagtgcgtcg ttttttaaaa aaatatcgtt agatagctga       360
     agtaaaaagg aaaaaaggaa caggtgaaaa aaaatgcacc acgccacgtg aagatcgctt       420
     tattatgaga acgagcctgc aggatcgttt caaaactgca gtgcagataa gatctgaggt       480
     acatgaacag ttttcaaaag atatttcgga gcgaactgtt caacgtcgac ttaactctac       540
     gggaatgctt gcaggatcac ctgcaaaaca gccacttttg aatccgcgaa tgaaaaaaaa       600
     tcgtctaaac tgggccaagg acaaggaaaa ttggactgct tctgattggt caagagtact       660
     attttcagat gagtccaaat ttaatctcat tggatctgat ggaatcctca aggtgcgccg       720
     taaacgtggg gaacgttatt ctgcaaattg ctgcatagcc acagtaaagc attcaccgta       780
     tgttatggta tggggatgca tatccaaata taaaactgaa tcaattttaa tggttcaggg       840
     tatggtcaat gcagaaaaat acaaagaaat aattttaagt ggagttgtgc ctagcattga       900
     gtccataagt gaagaagaag aaaaacccat ttttcaggat gattctgcac catgctatcg       960
     agcgcgatct ctgagttatt cagtgtccga ttgttatcaa aacaacttat tcagttaaat      1020
     ttaacatttt tctatctaaa gataacaaat ttgaaggaga aattgggcat taagtcctta      1080
     gattggccag gaaacagccc agaccttaat ccaatccaga atttttgggc ctatatgggt      1140
     gccaaaataa gaaagcaaaa gcccaaaact atggaagagc taaaacaaat tatagaaaaa      1200
     gtatgaatac acgatataac gaaggaatat ttgtgttcca tttacgattt tatgatcgag      1260
     agggtaaaag ctgtaattag ggccaaaggt ggmattacta agtattaagc taaattaaaa      1320
     aatatgtcta ttgttaaatt gcctagattt aaattttttt ttatagttaa caaggtgttc      1380
     aattgaaaaa aaatagtttt cgttgaattt tttcattatt ataactttta tgaatttttt      1440
     ccttaagttt gccataatag tgataagtcg ttaaaactag ggtcaaccca aaaaacaaca      1500
     tttttttaat attaaaaaca aatttaaaat aaaaattggt atgcactttt attaacatac      1560
     catcagttaa cttgttaaaa aaaaaatcgg gcgaatccgc aatcatataa tgaaaccaca      1620
     ggacctgaaa ggtaaaaatt cgtaagcctt caaagtgcgg ctttttttgt ggcgctgact      1680
     g                                                                      1681
//
ID   Mariner-14_DBp repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1287
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 597-597 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. ~80-bp TIRs. The consensus
CC   is ~93% identical to that of Mariner-3_DRh.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1207
FT                 /product="Mariner-14_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MISLDIAFTSYRRVNMEFTNAEIRAILKFSFVKGKSA
FT                 RETFREINGVLGDGTLSLRTAEEWFRRFRAGENDTMDKPAGGRPVTTNTDQ
FT                 IMEYIELDRHVASRDIAQEMGVSHQTILNHLQKAGYKKKLDVWVPHDLTQK
FT                 NLVDRINACDMLRKRNELDPFLKRMVTGDEKWITYDNIKRKRSWSKAGESS
FT                 QTVAKPGLTARKVLLCVWWDWKGIIHYELLPYGQTLNSTIYCEQLDRLKQA
FT                 IDQKRPELANRKGVVFHQDNARPHTSLMTRQKLRELGWEVLSHPPYSPDIA
FT                 PSDYHLFLSMTNALGGVKLNSKEACEKWLSEFFANKEGGFYEGGIMKLPSR
FT                 WKRIIEQNGAYFN"
XX
SQ   Sequence 1287 BP; 378 A; 279 C; 326 G; 304 T; 0 other;
     taaggttgtc aaatatctcc cttccgcctt tttgtctttt gaatttcgcg gctatgtaca        60
     aagcgctaca gagctcgtat ctggcaacac tatacataat ttaaaaggtc ttgacataac       120
     ctacaaaacg acgctatgca tgattagttt ggatattgcg ttcaccagtt atagacgtgt       180
     aaacatggag ttcactaacg ccgaaattcg cgctatttta aagttttcct tcgttaaagg       240
     caaatccgct agagaaacgt tccgtgagat taatggggtt ttgggggatg gtactctatc       300
     acttcgaacc gcggaggaat ggtttcgacg attcagagcc ggtgaaaacg acaccatgga       360
     taagccagcc ggcggaagac ctgtgacgac aaataccgat caaatcatgg aatacatcga       420
     gttagaccgg catgtggctt ctcgtgacat cgcccaggag atgggagtta gtcaccaaac       480
     cattttaaac catctgcaga aggctggata caaaaaaaag cttgatgttt gggtgccgca       540
     tgatttgacg caaaaaaacc ttgtggaccg aatcaacgcc tgcgatatgc tgcggaaacg       600
     gaacgaactc gacccattct tgaagcggat ggtgactggc gacgaaaaat ggatcacata       660
     cgacaatatc aaacgaaaac ggtcgtggtc gaaggccggt gaatcgtccc aaacagtggc       720
     caagccggga ttgacggcca ggaaggtttt gctgtgtgtt tggtgggatt ggaagggaat       780
     catccactat gagctgctcc catatggcca gacgcttaat tctaccatct actgcgaaca       840
     attggaccgc ttgaagcagg cgatcgacca gaagcgtcca gaattggcca acaggaaggg       900
     tgtagtgttc caccaggaca acgccagacc acacacttcg ttgatgactc gtcagaagct       960
     acgggagctc ggatgggagg ttttatcgca tccaccatat agcccggaca tagcgccaag      1020
     tgattaccac ctgttcctgt ccatgacgaa cgcccttggt ggtgtaaagt tgaactcaaa      1080
     agaggcttgt gaaaagtggc tgtccgagtt cttcgcaaat aaggaggggg gcttctacga      1140
     gggaggtatt atgaagttgc cgtctagatg gaaacggatt atcgaacaaa acggcgcata      1200
     tttcaactaa atcggatcac tgtaacactt tttataaagc attgaataaa gagcaaaaaa      1260
     gcggaaggga gatatttgac aacctta                                          1287
//
ID   Mariner-14_DEl repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1664
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4015-4015 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 1664 BP; 563 A; 287 C; 288 G; 525 T; 1 other;
     cagttcatat cacaattata agacatctgc aaaatgctta ttgaaatcct gaaaaattgt        60
     tgattcctta aactagaggc ttaacaaaaa tttatgacga aagtgaatgc agtccttgtc       120
     gataacatac cgttactttt tatttttggc ctagcttgga agggaaccgt tacatttcca       180
     accaagataa cgaaattatc ctagtttctg ccttaacaca attataagac acattgcaaa       240
     aagtggagtt gccgtaaccg tgtcaatttt tttttcttaa aattgagttg taattaaaat       300
     ttaatacttt ttgcataaaa tgccacgctc tacgctcttg acagaccaag aaaagggtca       360
     attctggcct attctcggct cggcttgaat gtgagccaaa tatctagaaa tattggtaga       420
     agtcgaaccg ttacaacaaa ttttctctag aatccagaca attatggtaa aaaacgaagc       480
     actggtcgaa aaccaatact ttctgactgc gaaaaaaggc gtatattaca taaagccagt       540
     aattctaacg cgttgtgctc ccagctagct gctctcagcc gtcgaaaagt ctctcaaatg       600
     gctgtctgaa ggactctaaa aatctcggga catattgtca gaggtattta aaaaaaaata       660
     cctcaagatt actaagcgtc ataaaatggc tcgcactagt tttgctagac gcaatttaga       720
     tactaactgg gactcggtaa attcaattta acatatatct ttaatattac ccttatcatt       780
     ttttttcata aaaggtaatt tttttggatg aaaaaaaatt taatctcgat ggaccagatg       840
     gatttagaca ttattggcga gatttgagga aggagcccct taatttttca aggagaaatt       900
     tcgggggcgg atcagtcatg gtttggggcg cttttaataa gcttggaact cttaatttac       960
     agttcacaag ctccaggatg gacagcagtg agtacatacg ggtactgaac aatagcctgc      1020
     ttccatattt gatggaaaat cgggaaaagc cgcatatatt tatgcaggac aatgcccgaa      1080
     tccatacgag ccgtccaacc acacagtttt cgcgagattg ttctgtcgaa gttatggact      1140
     ggacagcgtg ctctccggat ctgaacccta tagaaaacat ttggggagta ctagcaaggc      1200
     gagtttataa agataatgcc aagtatgagc gcgttcagga ccttaaaaca gctattttgt      1260
     ctgaatggag ccaacttgag ccaagtttat ttgaaaaacc tcataaattc aatgaaaaaa      1320
     cgaatttttg atgttggtat ttgtcaaggt tctgccataa actattaaaa tgttgttttc      1380
     ttatagtaca tatatattta tatttatatt tatagtttct tatttcctac atcataacca      1440
     aaaaaaacca aaagtgtctt ataattatga taaggttaaa aattagattt ttttcatttt      1500
     tgttaaacaa aatgtataaa cggtaaaata ataaactaaa accaactata aacacatgtc      1560
     taatttatct tttaacaatt tcagactagt tttccgccat ttggtttgat attatataaa      1620
     atatctaaaa aaatckaact gtcttataat tttgatatga actg                       1664
//
ID   Mariner-14_DF repbase;    DNA;    INV; 1649 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-14_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1649
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 781-781 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. ~570-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1649 BP; 571 A; 269 C; 293 G; 515 T; 1 other;
     cagtgacgaa cataattatt ggcacagttg gcttgttcaa ctttgaggct cagtttctcc        60
     tcttaaaatg gggatattta cataaaacaa aatttattta cataatataa ttaattaaca       120
     acacaaccca gtttatttta atattttaca tcttatagtt aatttttaaa attaaaataa       180
     cgaaaacaag tgccgaatct tcctgaacaa aattattggc acacttgctt ttaatttgaa       240
     atgttggcac aattttaccg atttggccag tttttttttg ttaaacacat ttattattat       300
     cccctgagtg gtatggtata actttttcca gctaaaagta tcaaattgcc ttttttttaa       360
     cctttttttc ataaaataag gggtaaacat aaaaactcta cattatcgga ccggaaaatt       420
     atttggaatt tccacaatct tggaaaatta tatggtgaga tcggagaaat gatagacaga       480
     agccactaaa ccattacaag catcgggcag cgttttaagg gcgcctaatc cttgaaaagt       540
     gatcagcgca caggttgact caaggcttta agtgactgga agcgggccaa aatcatagaa       600
     caagtgaaag taaacccgaa aatttcatta acaaagattg cagatgaggt gagagaacag       660
     tttttgaaaa aatttctccc cattacggtt cggaggacac tgcatagagc taactatacg       720
     tatcgggtcg caaaaaggaa accgcttatt tctaaagtca acaaacagaa gcgattggac       780
     tatgcaaaag agaatttgaa gtagccagtt gatttttggg ctaatgtcat cttttctgac       840
     aaaaaaaatt taatattttc caatctgacg gtcgccaaac tgtttgaaaa aagccttata       900
     taaaactcct aaacaaaaac cctgmtatgt cagttaagca tggtgttgga ggcgtcatgg       960
     tgtggggctg caagtccact gcaggtgtcg acgagttcga gtttatagaa ggaatcatgg      1020
     gaaaaaataa tatttcgata ttcttaaagg aaacctccaa aaaagtgccc aaaaggtcgc      1080
     taaagccttg agtcaacctg tgcgctgatc acttttcaag gattaggcgc ccttaaaacg      1140
     ctgcccgatg cttgtaatgg tttagtggct tctgtctatc atttctccga tctcaccata      1200
     taattttcca agattgtgga aattccaaat aattttccgg tccgataatg tagagttttt      1260
     atgtttaccc cttattttat gaaaaaaaag gttaaaaaaa ggcaatttga tacttttagc      1320
     tggaaaaagt tataccatac cactcagggg ataataataa atgtgttaaa caaaaaaaac      1380
     tggccaaatc ggtaaaattg tgccaaaatt tcaaattaaa agcaagtgtg ccaataattt      1440
     tgttcaggaa gattcggcac ttgttttcgt tattttaatt ttaaaaatta actataagat      1500
     gtaaaatatt aaaataaact gggttgtgtt gttaattaat tatattatgt aaataaattt      1560
     tgttttatgt aaatatcccc attttaagag gagaaactga gcctcaaagt tgaacaagcc      1620
     aactgtgcca ataattatgt tcgtcactg                                        1649
//
ID   Mariner-14_DK repbase;    DNA;    INV; 1663 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-14_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1663
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1207-1207 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~240-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1663 BP; 578 A; 275 C; 288 G; 516 T; 6 other;
     cagtgacgaa cttaattttt ggcacagttg gcatgtctga ctttggcacc gtttttctcc        60
     attaaatata gcgatattta catgaaacaa attttattta aatatattga tcaatttcca       120
     acaaaattaa cttagtttta tccttttata tcattccatt aatttataaa aattaaaaac       180
     taaaaaaact cctacatttc cctgaacaaa attattggca cacttggcac atagagtatt       240
     attttgtaaa aatttgatcg atctgttaac ttttttcatc tgggaagcct cgttatcttt       300
     atttagaata tgcttgttga taaaatttta acttaaaatc gtcgaagcgc ctattttcta       360
     agccaaagta gcgaatttta ccaaaatgtt gggcaaacaa aagtaaacta tcgaatttca       420
     acggaaaata gttttgtact tacataataa gggcaaatcg tatgctgagg attggggaaa       480
     tgataaataa atcccgtttt accatttaga gcattgtaca gtggttaaag agagccttat       540
     agagcgagaa tgctaagcac tcttaacgac ctaaggcttt gaccgaccgg gactgggtca       600
     ctatcatcag gaaggataag gtgaacccga aaatctcttc aacacaggtt gtagaagagt       660
     ttaaaaatta attcggttaa gatattcacc ctatttcggt ttggcggaca ctgtatgtag       720
     ctaactacag tttctcgttg ctagccgaaa acaactcatt ttaaaagtca atcaacagaa       780
     gcgtttagcc tattcaaaaa aatatttaag caagctagtt gacttttaaa acaattttat       840
     cccttctgat gaaaaaaatt aaacattttc caatcggatg gctgcaaaac agtaagaaga       900
     aagcccagta cggaactcca aaaagagaaa cttgtaacgt ctttgaaacg tagtggtaat       960
     atcgttattg tgtggggcta catgtgcgct gctggtgccg gagaactgga attcatatac      1020
     ggcataacgg acaaaacaaa tttttaagat atcctaaaga tatatcttaa aaaaagagcc      1080
     gataagttga acttaccagt cacattcact tttcagcaag ataatacggt tcattatgtg      1140
     cgtatgtggc tggtaaattt tcagaaatac cctttattac atccaccacg atctccagat      1200
     ccaatcccca tcgaagattt gtgggaagaa ttggacagac tgctaaaaag cgcaatatat      1260
     caacaaaggt cgagctaaag gtggcattta ccggggggtg gcttaaaata cgaatgggaa      1320
     ccacccaaac tttggttttt tcgaccccaa acggtcataa aacataagag cttagccaca      1380
     aaatattaat ttatactaaa aaccgtttca ttttgaactt ttttaatatt tttggttagg      1440
     tgtgccaata attttgttca gggatatgta gcagtttttt tagtttttaa atttttataa      1500
     attawwggaa kgatataaaa ggataaaact aagttcatta agttggaaat tkatcamwat      1560
     atttaaataa aatttgtttc atgtaaatat cgctatattt aatggagaaa aacggtgcca      1620
     aagtcagaca tgccaactgt gccaaaaatt aagttcgtca ctg                        1663
//
ID   Mariner-14_DRh repbase;    DNA;    INV; 1666 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1666
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1408-1408 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. ~250-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1666 BP; 559 A; 296 C; 331 G; 478 T; 2 other;
     cagtcccgca ctaaagtgtt ggcacacttg caatttttga ctttaaatgt tatttttagg        60
     cttgtgtagc attttaatga ttccattttt tttattggtt aaataaaaga ttttttattt       120
     gaaaggcacc attaattttt aattttctat aacgttatta aagctatttt aattttaaat       180
     gaaaaggaac ttatttcgtg acacaaaagt cttggcacag ttaaaatatt tttctgtact       240
     acttctatat taacccggat ctggtcatac ttttttatga aatttataac gggtttcccg       300
     ttaaataaca tgtgatcaaa gtttcaaaga atttttgctg tgttgggttt ttttatgcat       360
     tttgttttga atttttgaaa aatggagaat aagcgcaagg aatscaacga agctcagaga       420
     aaaattgtcc tgcatctcta caacgaagga aaatcctatg gcgaaatcgc caacataatg       480
     gaaatgagcc gattttccat ccgaagcatc gtgcaacgat ttaagggagc ttccagtttg       540
     gcgaatgcac ctagatctgg acggccgagg attttgactg accgggaacg cagccaactg       600
     attcgaaaag tgaaggtgga tccgaaaata acctcttccc agattgccgc agaggttaag       660
     aatgagtttg ggaaggaagt tcaccccatg actgtgcgaa gggccctgca cgaagccaac       720
     taccacagtc gtacagctag aaggaagcca ttgatctcag atgtcaataa aaaaacgctt       780
     agcctatgcc aaggactttt tgggcaagcc aattgaatat tgggatcagg tattgttttc       840
     cgatgaaagc aaatttaata tttttcgatc cgatggccgt cagcaggtgt ggagaaagac       900
     aaacactgct ttggataaaa aaaatttggc gccaacagtg aaacacggcg gcggaggagt       960
     catggtgtgg ggatgcatgt catctgcggg tgttggggag ttggtattta tcgagggaat      1020
     catggacaag gcttattacc tcaatatttt gaaggacaac cttaaaaaaa gtgcctcaaa      1080
     cctaagcatg ccgaactcgt tcacatttat gcacgataat gatccaaagc atacggccac      1140
     agatgttcgc atgtggctca cktacaatac cgcacacgtt ctgccacatc ccccacaatc      1200
     acctgatctc aaccctatcg agcacctgtg ggaggaattg gataggaata taagaaagca      1260
     tgacatttca tcgaaaaatt atctcaaaaa agctttgatg gaggaatggg tgaaaatttc      1320
     ccaagaggtg accaaaaaac tggtacattc catgcctaga cgtctcgaag atgtcattaa      1380
     acaaaaagga ctaccaacca aatattaaat tataagttaa atgtaaaaaa tagtataatt      1440
     aggttaagtg tgccacgact tttgtgtcac gaaataagtt ccttttcatt taaaattaaa      1500
     atagctttaa taacgttata gaaaattaaa aataatggtg cctttcaaat aaaaaatctt      1560
     ttatttaacc aattaaaaaa aaggaatcat taaaatgcta cacaagccta aaaataacat      1620
     ttaaagtcaa aaattgcaag tgtgccaaca ctttagtgcg ggactg                     1666
//
ID   Mariner-14_DSuz repbase;    DNA;    INV; 1669 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1669
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 96-96 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus.
XX
SQ   Sequence 1669 BP; 583 A; 298 C; 338 G; 449 T; 1 other;
     cagtggatcm cattaatatt cggttttttt ttttttcaac ttcaaacgcg aataaaatgt        60
     ataagactaa ggagggaaat ttggttcttt ttggtatatt caagttttta atgttacctt       120
     ttcatagata tatatatttt aatacttttt ttgatattta acgaaaaaac atacataaac       180
     caaaaaaaag ctctatattt gcgttacttt aatattcggt tttttcgaaa gtcgtataaa       240
     aaagccctgt ggcaactcca aatggccaaa aattggcgca attagtgtgt ttccccgaaa       300
     agccaacatc tgaccgacaa tagttgacac caaacaagcc gcaaacatta agttttagcc       360
     acgaatttaa aatgggccgc aaaagtaaga attcgtcctt ggagcagcga aaacttgtcc       420
     tccagttgca tctagagggc aaaacttaca aggaaactgc cgatatcctg gaaatgaagc       480
     caaatacggt cggtgacatc gtccgcagat tcaaaaatga gggaagagtg gagtatataa       540
     agcagaaagg acaacccaaa aaattgactg atcgcgaaga agcggaaata gtccgaaagg       600
     ttaagaaaaa tcctcgacta agtgcacccg aattgaaggc cgagctcttt gccgaccatg       660
     ggaagaccgt ttcagcgcaa accgttcgtc gtaccataaa aaaacaaggg tacaacggca       720
     gagtcgctcg aaagaagcct ttgctgtctg agcgcaaccg gaaactgagg gaaaatttcg       780
     ccaaggagta cgccaaaaag gaccaaagct ggtgggacga tgtcattttc ttggacgaga       840
     gcaagtttaa ccttttcggc agtgatggca agactatggt ttggaggaaa cccaataccg       900
     agctccagaa acaacaccta agaccaacag taaaacacgg cggaggaagt gttatgattt       960
     ggggatgcat ttcttcaaaa ggagtgggaa atctagtctt tatagatggt ataatgaacc      1020
     aggacaagta ccttaaaatt ttagaagaaa atttgaagca gtcggcagag aaaatgggca      1080
     tacgaaacac ctttaagttg tatcaggaca acgacccgaa acacaaggcc tataaagtaa      1140
     ggtcctggtt gttgtacaac tgcccaaaag tcttggaaac gcctccccaa tcacctgatc      1200
     tcaatccaat tgagaatctg tggagtgagt tggaccgccg tgttcacaaa acgcctatat      1260
     cgtccatatc ggccttaaaa gaacggcttc aggaagagtg ggctaaaatt gggccggaat      1320
     acacccaaaa aattatagcc aatatgccaa aacgactgaa tgatacccta cgaaataatg      1380
     gctatcatac caaatattaa attaggtgtt atttctaaga aaaaaaaagt tttttgtagc      1440
     tttaaagaaa aaaccgaata ttaaagtaac gcaaaatgtt gagttttttt tgtttatgta      1500
     tgtttttgtt tttatttttt aatataacca taagatatgt acctcaatga attggtaata      1560
     aaaaaagctt taatttttca ttttaagatt gtttgttatt gtttgatttc aacattttat      1620
     tcgcgtttga agttgaaaaa aaaaaaccga atattaatgg gatccactg                  1669
//
ID   Mariner-14_HSal repbase;    DNA;    INV; 1271 BP.
XX
AC   .
XX
DT   07-DEC-2011 (Rel. 19.04, Created)
DT   07-DEC-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1271
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 854-854 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..834
FT                 /product="Mariner-14_HSal_1p"
FT                 /translation="MSSFVPNKQHLREALLFCFNLKKSAAEARRLLEEAYG
FT                 EHAPSKTTCEDWFKRFRSGDFDTEDKERSGRPKTIEDADLQALLDEDDTQT
FT                 QDQLAEALNMTRQGISKRLHAMGKIQKEGKWVPHELTERQMENRRATSEIL
FT                 LLRHERKSFLHRIVTGDEKWIYFENPKRKKSWLSPGEASTSTARPNRFGKK
FT                 TMLCVWWDQKGIVYYELLKRSRAKLSMGIATDNN"
XX
SQ   Sequence 1271 BP; 385 A; 274 C; 302 G; 310 T; 0 other;
     actaagtttc cgggtttcac acatggatgg cgctaacgac acatgtagtc gacatacatg        60
     tctgaagttg tgtttttttt atagcttgga catctgttaa caataaccag tcgtaatacc       120
     aacacatatc gcaacgcaaa aatatttttt ctaacaacga agatgtcgag ttttgtgcca       180
     aataaacagc atttgcggga agctttgctt ttctgcttta acttgaaaaa aagtgcagct       240
     gaagcacgtc gtttgcttga ggaggcctac ggcgaacatg caccatcgaa aactacctgt       300
     gaagattggt ttaaacgctt cagaagtggc gatttcgaca ctgaggacaa ggagcgctcc       360
     ggaagaccaa aaacaattga ggacgccgat ctgcaagcgt tattggatga agatgatacg       420
     caaacacaag atcaacttgc ggaggcatta aacatgactc gccaaggtat ttccaaacgt       480
     ttacatgcca tgggaaaaat tcaaaaggaa ggaaaatggg tgccgcatga gttgactgag       540
     agacagatgg aaaatcgaag agccacttcc gaaattttgc ttttgcggca tgaaagaaag       600
     agtttcctgc atcgaattgt tactggcgat gagaagtgga tatatttcga gaatcccaaa       660
     cgcaaaaaat cgtggctttc acctggcgaa gcatcaacat cgacggcacg gccaaatcgc       720
     ttcggaaaga agacaatgct ctgcgtttgg tgggaccaga aaggaatcgt gtactatgag       780
     ctgctgaaaa gaagccgggc gaaactgtca atgggcatcg ctaccgacaa caactgatca       840
     atttgaacca tgcattgctc gaaaaacggc cagaatggga cacgagacac gaacgagtga       900
     tattgcagca cgacaacgct ccgtgccatc gcacttccat cgtccaggac accatcaaaa       960
     cgctgaaatg ggatctgcta ccgcacccgc cgtattcgcc agacctggcc ccttccgatt      1020
     atcacttgtt ccggtcgatg gcgcatggct tggctgggca acacttggcc aatttcgaag      1080
     aagtgcaaaa ttggttggat gaatggtttc ggtccaaaga cgcgtcgttt tatcgtcgcg      1140
     gtattcatgt attgccagag agatggcaaa aatgtgtagc tagcgaggga cgatactttg      1200
     aataaaccat tttttgtatt tctcttgaaa ttttccattt ttcattgatc aaaaaaaccc      1260
     ggaaacttag t                                                           1271
//
ID   Mariner-14_LHu repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 372-372 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus. ~30bp TIR.
XX
SQ   Sequence 1293 BP; 423 A; 226 C; 283 G; 355 T; 6 other;
     cgggggcagt ctgaaaagtt cgcggagcga catctgtaag tcaatagtag agttttaaat        60
     ttaattggct gtacaacttc actcttcata tgaacccatg tgaagtgcga aatccatctg       120
     tcaattgatt ctttacttac aakccattca aagktgacgt gtcagtgtat tttttaaaat       180
     ggaaaatttg aaacatcgtg ctgtaataga attctttgtt aagaaaggtt taaaggcaat       240
     ggaaattcat actgaaatgg taaatgtgtt aggagaatct gctccttcaa aaacaatggt       300
     ttgcaagtgg gcacttgagt ttcaacgtgg tcgtacaagc atcgaagacg atccccgcag       360
     tggacgccca aaaagtgtta caacaccgga aatcgttcaa caaattcatg acatggtatt       420
     ggatgaccgg cgaataaaag tgcgtgagat tgctgaggcc atgggcatct caaaagaacg       480
     tgtaggttat attttacacg aagaattgca tatgaaaaag cttagtgcaa gatgggtgcc       540
     gcatctgcta agaattgatg agaaacggaa tcgaatgcga atttctcaag agtgtttgga       600
     tcgttttaag aaaaacaaag ctsattttgt gcgtagattt ataactatag atgaaacatg       660
     gattcatcat ctcacaccag agacaaaaca gcaatcgatg cagtggacag aagccggttg       720
     ttctgcaccg aagaaggcaa aaatggttcc aacggcggga aagattatgg cgtctgtttt       780
     ttgggatgca aaaggsattt taatgattga ttatcttaga aaggtaaaac aacaaccgga       840
     gagtattatg caaaagtttt ggaccaactg ggtaaaamaa ttcgtgagaa aagacccggt       900
     ttgawgaaga aaaaaatcat ttttcaccaa ggcaacgcac ctgcccacaa aagtgttttg       960
     gcgatgggaa aaatcaacga attaaaatat gaattgttgg aacatccacc ctattcacca      1020
     gatttggctc cttccgactt ccacctgttt ccaaaactga aaaacttctt cgctggtaag      1080
     cgtttttcgt ccaataaaga agtgattgca accgtagacg agtattttgc agaccttccg      1140
     caaagtcatt tcagggatgg gatacattta ttagagaagc gctggactaa gtgtattgaa      1200
     gttaaaggag attatgttga aaaataaagc catttctaga actataactt gtttttttca      1260
     tttccgctcc gcgaactttt cagactgccc tcg                                   1293
//
ID   Mariner-14_LMi repbase;    DNA;    INV; 1346 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1346
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3254-3254 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1228
FT                 /product="Mariner-14_LMi_1p"
FT                 /translation="MAVCKVTMSVREKQRAVIEFLTAENTPPIEIHRRMKT
FT                 VYGDECIDISNVRRWAARARKHGPNLNVCDRARSGRPRTATDETHRNRVDQ
FT                 LIRENRRITQAQLSLQCGISRERVQALIAELRYRKVCARWVPRMLTPDMKQ
FT                 RRLDICQQLLLRFEQEGDGFLNNIVTGDESWVHHFDPLSKRASQEYRHHGS
FT                 PPPRKCKTMPSAGKIMLTVFWDVRGVVHMEFMPKGTTINSARYSETLRKLK
FT                 ARIRRTRPHMEHPLLQHDNARPHTSAATSATIRRLGFTVIDHPPYSPDLAP
FT                 SDFHLFPKLKEHLRGVHFTTDEAVQAEVRRWFRQRGPNFYSDGIHKLVSRW
FT                 EKCVRRQGDYVEK"
XX
SQ   Sequence 1346 BP; 359 A; 337 C; 346 G; 304 T; 0 other;
     cgaggggatg ctgaaaagta atgcctccaa atttttttcg tctgttcgca gcatggttga        60
     ggtttcgcat gtcctgcata ttactcggtt gtccttgccg cgtagctgac gcaaagtaca       120
     accctctgcc gctagagggc ttcgagtagt accgagtaac atggcggtct gtaaagtgac       180
     tatgtcggtg cgtgagaaac agcgtgctgt aatcgagttt ctaaccgcag aaaacacgcc       240
     tccaattgag atccacagaa gaatgaaaac tgtgtacggt gacgagtgca tcgacatcag       300
     taatgtgcgc cggtgggctg cccgtgctcg taaacacggt cctaacctca acgtctgtga       360
     cagagcacgg agtggacgac cgcgtacggc aacagacgag actcatcgga atcgggttga       420
     tcaactcatc agagagaatc gtcggataac acaggcacaa ctctcactgc agtgtggcat       480
     atcacgggag cgtgtacagg ccctgattgc agaactgcgg tacagaaaag tgtgtgcacg       540
     gtgggtgccc cgtatgctca cccctgacat gaaacaaagg agattggaca tctgtcaaca       600
     attgctgttg cgttttgagc aggagggtga tgggttcctt aacaacattg tgactggtga       660
     tgaaagctgg gtgcaccatt ttgaccccct aagcaagcga gcatcacagg agtaccgcca       720
     ccacggatca ccacccccaa gaaagtgcaa gaccatgccg tcggcaggca agatcatgct       780
     cactgttttc tgggatgttc gaggtgtcgt gcatatggag ttcatgccta aaggcaccac       840
     cataaactcc gcacggtaca gcgagactct ccgcaaactg aaagcacgca ttcgaagaac       900
     tcgtccccac atggaacacc ctctccttca gcatgacaat gccagaccgc acacgagcgc       960
     tgcgacatct gcaacgatcc gccgccttgg attcactgtc atcgatcatc ctccatacag      1020
     tccagacttg gctccatccg attttcacct ctttccaaag cttaaagaac accttcgcgg      1080
     tgtccacttt acaactgatg aagcagtgca agcggaggtg aggcggtggt tcagacaacg      1140
     aggtccaaac ttctacagtg acgggatcca caaactggtc tctcgttggg agaaatgtgt      1200
     gcgtcgccag ggtgactatg ttgagaaata aatatgtaga aatggtgaat aaagatgtgg      1260
     tattgtaata cagtttggtt tatttcaaaa gccgtaaggt attcccggaa aaaaaatcgg      1320
     aggcattact tttcagcatc cctacg                                           1346
//
ID   Mariner-14_RPr repbase;    DNA;    INV; 1317 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1317
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3261-3261 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1317 BP; 385 A; 265 C; 313 G; 354 T; 0 other;
     cgaggtctgt aaattaagta atgagactgg caacgttgcg tttgatctag caacactgga        60
     ggcgctgggc ttggaggggc ggcagaggaa catgtgatcc gccttcagta cgagtttgac       120
     ctcgctcgag tcatttggtt gtgcgtagcg attgtttttg tgaaacagtt ttttctattg       180
     tgttctaaaa atgagtgaga tcaatttcga gcaacggtgt gctatcaggt tttgcttcag       240
     acttgggcac agtgcaacgg aaactcttgc taaacttcag caggcctacg gagataagtg       300
     ttttgtcaag agcccaggtt tttcggtggt ttaaggcatt ttcagaagga agagagtcga       360
     ttgaagatga accacgaagc ggaaggcctt catcttcaag aaccgatgaa aatgtcgaca       420
     gaatccggga tcttgtgcgt tcagatcgcc ggttgacagt cagaatgatc ggggaagagt       480
     taaatttgac tcacaccacc gttcatcaaa ttttgaccaa tgaattgggg atgagaaaaa       540
     tctgcgcaaa aatggttcca aaaaaacctt tcgcaagacc cagaagaaca tcaggaagga       600
     aaggtgcctt gactttttgg attcaattga aaatgacccc cattttctgg aacgtgtcat       660
     tactggtgac gagtcttggg tgtttgagta cgacccagaa accaagcgcc agagcatgga       720
     gtggcacact tcaacctctc caaggcccaa aaaagcaagg atggcgaagt cgaagatcaa       780
     atgcatgctg atttgttttt tcgatatcca cggaatcgtc cacaaagagt ttctacctca       840
     aggtcaaacg gtcaatcaac acttttaccg agaggttctt gaaaaacttc gaaaaagggt       900
     cattcgtgtg agaccaaaca tcaagaacaa gtgggtgttg catcacgata atgctccttg       960
     tcacacagca atttcaataa actgagtttt tggccagtaa aaacattcct gtggctcctc      1020
     agcctcctta ttcgcctgac ttgagtcctt gtgacttttt tctcttcccg aagttgaaaa      1080
     atcacctcaa gggaactcat tttgggacag tcgaaaacat tcaaacggct gtaaccgacc      1140
     agctgaaggc tattccagta tcggagttcg agcactgcta tgaggagtgg aagaaacgtc      1200
     tccagcgctg tgtggcttca gaaggaagtt attttgaagg tgacaatata gaattgtaat      1260
     tctttttgaa taaaaaattt taaaaaatca gtctcattac ttaatttaca gacctcg         1317
//
ID   Mariner-14_SIn repbase;    DNA;    INV; 2342 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-14_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2342
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 330-330 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. ~400bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           832..1887
FT                 /product="Mariner-14_SIn_1p"
FT                 /translation="MSYSNAEACDMMLILGECDGQFRAAARLWRERYPDRA
FT                 PHSYKVFSRLANRITNKGIIQPDHNKGRRIRRQVRDERMPEILASAQLHPC
FT                 HSLRRTERDSGISRSTIWRIFHENKLHPYRMSLHQALTIDDFRYRFEFCNW
FT                 IRQQSRNFHQKILFSDECTFSSDGSVNTWNCRYWAQENPHWFREIDHQHVW
FT                 KVNVWRGIIGKHVVGPHIFEVNLNGIRYANFLENDLPPLLENIDLQLRLNM
FT                 FFQQDGCPAHTSRVARERLNEMFPDKWIGKYGPHHWPPRSPDLTVLDYYLW
FT                 GRLKDLVYRERPTTRDDMIRRIRLAIRSLHVDEILHATNNFEKRVLACIEA
FT                 NGGHFEHQA"
XX
SQ   Sequence 2342 BP; 684 A; 511 C; 484 G; 662 T; 1 other;
     cagggtgtcc cagaccaccc gtctcacccg attttttcgt aaacgcgaca ttttaaagaa        60
     aaatgtttca gacaaaagtt ttgtgacttc gagggggaca taagatggtg tcattggttt       120
     gaccttggat agtcgtttga agatcacgtg aaggtcacct ttaatttctt aaatggaaac       180
     ccccattttt caatgcatat tcttgtagct tacctcgaga gctttccaaa acgctataat       240
     aaaacgtttt tttaatcagt acttttcgag ttatgagggt tgaaagttac ggtaccgccg       300
     gcattagcat tacccaaggt gtaccgcgtg gaggttgcac ggtcggattt acacctctgg       360
     tgtgtgtgtg tgtgtgtgtg tgtgtnttgt gtgtttgtgt ttgcccgttc acgggcaact       420
     ctagatgtat gcgctggaca tccatcttgc tggaaaaaca tgtttaggcg caattgtaga       480
     agaatatttt caagcaatgg cggaaagaaa gtagatttcg tcggaaatgt ccgattttac       540
     gcgctgcgtt aattaaaccg aggaccgaat atttgactcc cgtttagttt agtctttagt       600
     ctaacacacg tacacatgca cattctcttt ctttcgtttc ttttagttca gtaatttcgt       660
     cagtagtaac gaaaaaactc tccacgagca tttcttacgt acgaacaacc gcaaaaattc       720
     attcaaaaca acatcagcct tgaatcgatt aaaaacgtct tgtcttgtca tatacgtttt       780
     tcatgtctga tactgtcacg taaggtgtaa caaaattctc atttaccagc catgtcgtat       840
     tcaaacgcgg aagcttgtga tatgatgctt attttaggtg aatgtgatgg tcaatttaga       900
     gcagctgcaa gattgtggcg agaacgatac ccagatcgcg ctcctcattc gtacaaagtt       960
     ttttctcgct tagctaaccg aattaccaat aaaggtatta ttcaaccgga tcacaataaa      1020
     ggtagacgaa ttcgacgcca agttagagat gaaaggatgc cggagattct tgcatccgct      1080
     caattgcatc cctgccattc attaagacgt acagaaagag attctggaat tagtcgcagc      1140
     acgatctggc gaattttcca tgaaaacaag ctgcatccgt acagaatgtc tcttcaccaa      1200
     gcattgacga ttgacgattt tagatacaga ttcgaatttt gcaattggat tcgtcaacaa      1260
     tcgcgcaact ttcatcagaa aattttattt tccgatgaat gcacattttc aagtgacggc      1320
     tctgtaaata catggaactg tcgatattgg gcacaagaaa atcctcattg gttccgagaa      1380
     attgaccatc aacatgtttg gaaagtcaat gtttggcgcg gaattattgg aaaacatgtc      1440
     gttggaccgc atatctttga agtgaaccta aacggtattc ggtacgccaa tttccttgaa      1500
     aatgatcttc cgcccttgct tgaaaatatt gatctacaat tgcgcctaaa catgtttttc      1560
     cagcaagatg gatgtccagc gcatacatct agagttgccc gtgaacggtt gaacgaaatg      1620
     tttccagata aatggatagg caaatatggc ccacatcatt ggccaccacg atcaccggac      1680
     ctcactgttc tcgattacta tttgtgggga agactaaaag atctggtata ccgcgaacgc      1740
     cctacgacaa gagatgatat gattcgtaga atacgtctcg ctattcgttc tctacatgtt      1800
     gatgaaattc ttcatgcaac aaataatttc gagaaaagag tacttgcttg cattgaagca      1860
     aacggtggac atttcgaaca ccaggcctaa taacatcagc cacacataca cacacacacg      1920
     cacgcacgcg cgcacgcgcg cgcgcgcgca cacacacaca cacgcacgca cgcacacaca      1980
     caccagaggt gtaaatccga ccgtgcaacc tccacgcggt acaccttggg taatgctaat      2040
     gccggcggta ccgtaacttt caaccctcat aactcgaaaa gtactgatta aaaaaacgtt      2100
     ttattatagc gttttggaaa gctctcgagg taagctacaa gaatatgcat tgaaaaatgg      2160
     gggtttccat ttaagaaatt aaaggtgacc ttcacgtgat cttcaaacga ctatccaagg      2220
     tcaaaccaat gacaccatct tatgtccccc tcgaagtcac aaaacttttg tctgaaacat      2280
     ttttctttaa aatgtcgcct ttacgaaaaa atcgggtgag acgggtggtc tgggacaccc      2340
     tg                                                                     2342
//
ID   Mariner-15N1_HSal repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-15N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-536
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 855-855 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 536 BP; 175 A; 102 C; 116 G; 143 T; 0 other;
     acacatcact caataagttc gtaggatgac atataaatgg cgctactatt gacaaatcca        60
     tatgattttt aggaagtact aaccttcaaa tgatacgtgt caaaatttca tgacaatcgg       120
     acgtttagtt cacaagttac agtggttcga agtgggtacc gcgtttgctc acagtcaatc       180
     aaaaacagca acgcgtcgac gattcagcgg gctgtttgga gctgtttcag cgcaataaaa       240
     aggatttttt gatgcggtat gtgacaatgg atgaaacatg gatccatcac tacactccag       300
     agtcaaatcg gcagtcagct gagtggacag caaccggcga aacccgccca aagccgaaac       360
     tgaagcctat tttgaggcca aagataaatc gttctacaaa aaagccatcg aaatgttaga       420
     gaagcgttgg aatcaatgta tcactcttga aggagactat gtagatgaat aaagtcaaat       480
     tttgcctaaa agttgttgtt ttattagtca tcctacgaac ttattgagtg atgtgt           536
//
ID   Mariner-15_AEc repbase;    DNA;    INV; 3854 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   22-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-3854
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 558-558 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           709..2286
FT                 /product="Mariner-15_AEc_1p"
FT                 /translation="MRFNPRNVIILLSAVFTAVDFPESPITTEEVTTQRKM
FT                 EKMIKEMYEDYYEIEQEESLDFLNSYDVPEAQEIELVDEEENYARNVKEMV
FT                 CDIDDISAEYKKGAVEYWRSGKLKPRTIESVKSRFRKVMSADQLRRWEKQM
FT                 NVGGSRLEKLERISVYTLDKFIEAIRKGAMIHDIDITRWALQAQQQVNLLG
FT                 FKASHEWVRRFKLAHQIVSRKVTKFITKKALMSKVALQADSNRFIENVKYY
FT                 IDRYGIENVYNSDQSGFQLELHAGRTLAQKGVKKVESVAQSISAITHSYTI
FT                 QPVISADGRLLSPLLIVLKEPSGTLGPRVQETMFTANNIFIMSSKSGKLTS
FT                 NHFETWVREVYYPNVGPNSVLLLDSWTGHCPDIIQRNRPDSAQDIVLLTIP
FT                 AGTTGKIQPLDVFGFRLWKNFVKHFSDVVMLLDLDVKLHSRNAILKLQSLT
FT                 HNQFSSPRFTNLFKYAWYKSGYLEHRPGEFDTPVDFCFKKHSKATCDICGE
FT                 IAVITCAWCKKSLCITHFFHDHRICNLYEP"
XX
SQ   Sequence 3854 BP; 1416 A; 541 C; 616 G; 1281 T; 0 other;
     cttttgaagg tacgtttata aaagaatata caaaatattt tgaacaatta agaacaaagc        60
     attaataaag aaattaatac tttaataaaa ttttattcat ttcattttca tcgtagagca       120
     gctaattcca tttaatgttg acatcaataa tgtattgata aggcgatgta aaaaatatgt       180
     agatttgctg acacagataa aacaataatt tttgtctgcg tatgttattg acacataagt       240
     ataaaaaggg gcaaatcgtt ggaatgaatt cagtttcgtg cttgatttcg aataagtact       300
     actagttgct aatgatacta attggctaat aagtatttat tttttataac tgcattatat       360
     gttgatcgta cagtagctaa ttgcagtgtt caatgttaac atgaataatg tattgcaaaa       420
     cattgcgtct tattaatcta ggcgaaaaat agtattcaac tgttaggatt tgatgaaaca       480
     gtatatttat aatttgataa catttttaaa acacttgtag gaagacgtca tatatacatt       540
     gtacaaaatt gttttttccc ttgttcaacg aattcctttg aaggataacc aaataagaag       600
     atatcaaatt tattatgaaa tagacaataa aaacttttct ctctttcttt tagtaattat       660
     tatattggaa atggacatgt aaataatatt tataattttt agaaaataat gcggtttaat       720
     ccacgaaatg taataatact gctgtctgca gtatttactg ccgtggactt tccagaaagt       780
     cctataacaa cagaagaagt tacgacgcag agaaaaatgg aaaagatgat aaaagaaatg       840
     tacgaagact actatgaaat tgaacaagaa gaatcgttgg attttttaaa ctcatatgat       900
     gtaccagaag cacaagaaat agaactcgta gatgaagaag aaaattacgc acgcaatgta       960
     aaagaaatgg tttgtgacat cgacgatatt tcagcagaat ataaaaaagg agcagttgaa      1020
     tattggagaa gtggtaagtt aaagccgaga acaattgaat ctgtaaaatc aagatttcgg      1080
     aaagtaatgt cagcagacca attgcgacga tgggaaaagc aaatgaatgt aggtggtagt      1140
     agacttgaaa agttggaacg aatttcagta tacacgttag ataaatttat tgaagctatt      1200
     cgtaaagggg caatgatcca tgatattgat attacacgat gggctttgca agcgcaacaa      1260
     caagtaaact tattaggttt taaagcatca cacgaatggg ttagaagatt taagctcgcg      1320
     catcaaattg tatctagaaa agttacgaaa tttataacta aaaaagcttt aatgtcaaag      1380
     gtagctttac aggcagacag caataggttt attgaaaatg tcaaatatta tattgaccgt      1440
     tatggaattg aaaatgtgta taattcggac caaagtggtt ttcaattaga attgcatgct      1500
     ggtcgtacat tggcacagaa aggtgtaaaa aaagtagagt ctgtagcaca gtcaatatct      1560
     gcgattacgc acagttatac aatacaacct gttatttcag ccgatggtag attattatct      1620
     ccacttctta tagtgttaaa agaacctagt gggacattag gtcctagggt acaagaaacg      1680
     atgtttactg caaataatat ttttattatg tcgtcaaaat ctggtaaact aacatctaat      1740
     cattttgaaa cttgggtaag ggaagtatat tatccaaatg ttggaccaaa ttcagtttta      1800
     ttgttagatt catggactgg tcattgtccg gatataattc aaagaaatag accagattct      1860
     gcacaagata ttgttttatt aactataccg gctggaacaa caggaaaaat acaaccgtta      1920
     gatgtttttg gattccgttt atggaagaat ttcgtcaagc atttttcaga tgtagtcatg      1980
     cttttagatc ttgatgtaaa acttcattct agaaacgcta ttttaaaatt acagtcatta      2040
     acgcacaatc agttttcatc gccaagattt actaatttgt ttaaatacgc ttggtacaaa      2100
     agtggatatt tggaacatag gccaggagaa tttgacacac cggtcgattt ttgttttaaa      2160
     aaacattcga aagcaacatg cgatatttgt ggtgaaatag ctgtaattac ttgcgcatgg      2220
     tgcaaaaagt ctctctgtat aacccatttt ttccatgatc atcgtatttg taatctgtat      2280
     gaaccgtaaa tattgtaatg atttatacgt atacattgta aaaagataat tttaagcaat      2340
     gtctaaaaaa agacacatgg tgtgtgcttt tcacgtttta attgtagtaa atacaaaata      2400
     aaaacaaata ttgattattg acattttata tcaatacaaa taccatatta tattaataaa      2460
     aatatcaaaa actaacaata actttaaaat tatcgtatcg tagaattgca aataaagaaa      2520
     gtaaaacaaa ttatatatat gtatatacta gccaatttat tactgaagta cagtaatata      2580
     taattaatta cttatttgaa gtactaattg taagagtact gaacaacagt gcttttaata      2640
     cttattgtta aaataagtaa ttaattactg tctttcaata ttagtcaata ttagatttct      2700
     ataaaggtat aatgccatta cttctcaatt catactctgt aaatataaaa ataaatttat      2760
     gtaacacaat taacgtacca tattttttaa tgtttttctc acatgcacaa ataatggtac      2820
     ttacaaattt ccgcctatct acctcaatcc ttgcaaattc catcgtcaga ttttggtaat      2880
     atttcagaag aatttcctcg actaaaaact tctaatattc gagaaaattc cattggacct      2940
     cgactacgag ttcgaaattg agttccagaa tgtactcgta aattattatc ggcattctgc      3000
     ggcaaattgt ttttttttca ttattagcta gacgtctctg acactgattg taaaatagga      3060
     tacgcaagtt tacacgggtt attataatgt tttttataaa ttaataagta gaaaggaaag      3120
     tgtatcaaaa acatatatat tattgataaa tgcaatataa attattaata atgaaataag      3180
     tacctttttt ttgttatgag ttcataagaa gtaccgcatt tacaggttac ttcaaattta      3240
     tattcacaag tttcacagtt gcacatttta tccattttca atttatatga agcaccgcac      3300
     ttgcacgtta tttccatagc aaaatcaact gactatgcac aatcaatgct gcatatgctg      3360
     acttattgca cataggagca aatcgatttt ttgcataaca tcgcattaat aagacgtatc      3420
     atatcagtat cagtgacctc gccctgataa aatgaaaggt tcaaaaaacg tcggcattag      3480
     caatggataa aaacacagcg ataaccaagc taaccctctg atatctttaa aaatacctgc      3540
     acggaaaaaa cgctacaatc ggaaatgata attttcgctc atcaatacat ttggttgtga      3600
     taactgtaag atgaacatat ccttatcatt atttctggtt gtggtaactg tagcaatttt      3660
     ttccgtgtgc gaaagcatta tcaagatgac gccttatcaa tacattattg atgtcaacat      3720
     taaatggaat tagctgctct acgatgaaaa tgaaatgaat aaaattttat taaagtatta      3780
     atttctttat taatgctttg ttcttaattg ttcaaaatat tttgtatatt cttttataaa      3840
     cgtaccttca aaag                                                        3854
//
ID   Mariner-15_CFl repbase;    DNA;    INV; 1641 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1641
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 819-819 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           370..1377
FT                 /product="Mariner-15_CFl_1p"
FT                 /translation="MGGRSISTQVRNLIVRDIQKGLSQRNIAKNYEVSRGA
FT                 VEQIRRKFQSTGSVADRIGRGRKRATSKREDMKIIREVKKNPKITVREIQE
FT                 NIYLTVSDRTVRRRLNEANLHSRFARKRPFFSVTNKKKRLQFARKYANMSL
FT                 DFWKNILWTDESKFELFGQKKRIRVWRKHGEELQDRHIQKTVKYGGGNILV
FT                 WGCFSWAGVGNLVKINGIMTADVYIDIINENLEECLLKLGLEDNFIFQQDN
FT                 DSKHTAKKSQAFFRSCRIKQLEWPPQSPDLNPIENLWAILDNRINKSGVTN
FT                 KNSYFEALQLAWENLDPQHLKNLIESIPKRLQKVIEAKGNHINY"
XX
SQ   Sequence 1641 BP; 599 A; 227 C; 283 G; 532 T; 0 other;
     cagtgaccgg caaaaataaa aagccacttt cctagttata ctgttttgct taatgaaaga        60
     gtaaaaatat taaaacgatg agattttcat tgatgaaaga agaagcattt attatttatt       120
     ttaaaatttt atgttacaat cacataaatt attttttact tttcagtttt atttatattt       180
     cttaaatatt gctgtttatt atattgacaa aataaaaaag ccattcagat ttgttcgatt       240
     taatatatac aatattttgt ttggttgtca tgtcaacatg ttcgtgttat tgcgctcact       300
     tctcgttgtt gttaatcatt tttgcaacat tggcttatct cgattattac aaaaaattcg       360
     cggtcaaaaa tgggaggaag atcaatttcc acacaagttc gaaacttaat tgtgcgagat       420
     attcaaaaag gtctttccca acggaatata gccaaaaatt atgaagtaag tagaggagca       480
     gtagaacaga tcagaagaaa atttcaatca actggatcgg tggcagatag aatcggaaga       540
     ggtcgaaaac gagcaacatc caagcgggag gatatgaaaa taatccgtga agttaagaaa       600
     aatccaaaga ttactgttag agaaattcag gaaaacattt atcttactgt ttctgaccgc       660
     actgtacgtc gaagactcaa tgaagcaaat ttacacagcc ggtttgcacg taaacgacct       720
     ttctttagcg tcaccaataa gaaaaaacgt ttgcaatttg ctcggaagta tgcaaatatg       780
     tcattggact tctggaaaaa tattttatgg acagatgaaa gcaaattcga gttatttgga       840
     caaaagaagc ggattagagt ctggagaaaa cacggcgaag agcttcaaga tcgtcatatt       900
     cagaaaactg taaagtatgg cggaggaaat attttagtct ggggatgttt ctcatgggca       960
     ggagtgggaa atcttgtcaa aattaacgga attatgacag cagatgtcta cattgatata      1020
     ataaatgaaa atttggagga gtgtttgttg aaactcggac tagaagataa tttcattttc      1080
     caacaagata atgactcgaa acacacagca aagaaaagtc aagctttttt tcgttcctgc      1140
     cgaattaaac aacttgaatg gcctccgcaa tctccagatt tgaaccctat cgaaaatctg      1200
     tgggcaattt tggataatag gattaataaa agcggagtaa ctaacaagaa ttcttatttt      1260
     gaagcattac aactagcctg ggagaatttg gatccacaac atttaaaaaa tttaattgaa      1320
     agtataccaa aaagactgca aaaagtaatt gaggctaaag gaaatcatat taattattaa      1380
     ttaaaataat attgttgttt ttttaaatcg taatactatg ttaccttaac tggctttttt      1440
     attttgtcac tcttaaataa atgattatat agaaataaat acagtattaa ataaaaaatg      1500
     atttcttttt aattaaaaac attaaattac ttaataaatt ttcagtttta gttataaaaa      1560
     actttataat aaattttttt taccttttag catcaaatca gttttatagt taaggtggct      1620
     ttttattttt gccggtcact g                                                1641
//
ID   Mariner-15_DAn repbase;    DNA;    INV; 1643 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1643
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 271-271 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 26-bp TIRs. TA TSDs.
XX
SQ   Sequence 1643 BP; 560 A; 270 C; 283 G; 530 T; 0 other;
     cactccgttt cacttgaata gcacacccaa tttttcataa ttacttgttg atctctcaac        60
     aattgcttga tctaatgcaa tgattgttgc tctttttaat tcgtatcctt atctactctc       120
     tttaaacaaa aattggaagt ctgaaaatgt aacgtttaaa tttaccataa ttttcttttc       180
     aacttgcttc aataactggc acctttttta tttcacttaa atagcacatt ttagatttag       240
     tgtcatttca gcagccaagg agattgaatc ataaacgttt tttgattaat ttgtgaattt       300
     taaacatagt ttaatcattt tgtgcaacta ggggtcgtgg aacgtcacta agtcacaaag       360
     aaccgatcca aatacaaagc tatatttatt gtgaccatta tgtagccaat attgcgaaaa       420
     aaactagaag aagcagaaaa gtcgtataca attttatcaa caacaaatta aactatggaa       480
     aaaatataaa aggtcgcaaa agtaatgtcc ttagcggcac agataaaggt gcgattctgc       540
     gggaagcctc gaattcttat gactccgtga gcaagataag ggaaaaagca ggtgttgacg       600
     cgagcaaaac tactgtttgg cgagttattt tgaaagctaa acatcttaag cgtttgaaac       660
     ttaacaaaaa aaccaccgct taaccccaat cgaaaggaag cacggttgac cttttgccgc       720
     gtcaatatgt catggtgtaa cgagtggaag cgcgtagatt tttctgatgg aaaagttcaa       780
     tttggagggg ccagatggct acaattatta ctttcatgat ctgagaaaag ggacgcatca       840
     attggagctt ttacatagtc gattaggcgg atttatggtt tggggagcca tatcttacta       900
     tgggacttgt gaactcccat tcttatcctc aaacatgaac gcaaaagcgt acctaaacgt       960
     cctggaaaaa gcttttccac cattggaaat ttttttaaat aatttgcgtt agacattcca      1020
     gcacggcaat accccaattt atactgcacg tattgtaaaa tcttttttaa aagataaaaa      1080
     tgttgatagt ctgaattggc caccatactc gccggatctg aatataattg aaaatgtttg      1140
     gggatgactg gccagaaagg ttaatgagtc tggcaaacca ttttaaaaca aagaagatct      1200
     tattgaagcc attcagatca gcctgggcta caatatccct agactatata aaaagtctat      1260
     atgattcgct gcccaacagg atctacgagg ttatattgaa taaggggggc ttaacccatt      1320
     attaaattaa caaaaatata tattagaata ctcactatta aataaaaaca catttcctaa      1380
     tgtttaagtt cgttaaaaat actttaaaaa caagatgtgc tattcatgtg aaacaaaatt      1440
     tttgaggaac tttttaagtt tttaagttct tttgttaaca tttattaatt gctaatttaa      1500
     tttaggtttt gttacttttc ttatatttaa aattgattac actataaaaa gaaacttaaa      1560
     catcagtgag ttttcttttt ggttaaaaga tttcaagatt tgaaattgca tataaaagtg      1620
     tgctattcaa gtgaaacgca gtg                                              1643
//
ID   Mariner-15_DF repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-15_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1650
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 782-782 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~600-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1650 BP; 526 A; 310 C; 313 G; 492 T; 9 other;
     cactgcgcgt catcagatta gcgccccctg agcattctcg ggtaatgtcc aatattatcc        60
     aaactatcaa ggctaaagcc ataaaacttt ttttgacgat acttttaata atattcttca       120
     aaataagata aggtacataa tgataagtat aacaataata ttttatttat ttgaaaagaa       180
     aatgtatacc aaaaatatga atttaatttt gcgtcatcag attagcgccc cctgcttaaa       240
     tttaatgaat tttcacttaa tgcttaacaa ctagtaktgt tttatgtttt atcttattat       300
     ttacttattt tctaatcaaa ttaatagtgg gtggtcccgc ccccgttttc caggacctca       360
     cagatcctgc tgggaagtga ctcgtacaat ttctcaatgt attgtaatga wattgaagac       420
     caagcttctt taatcccgtc gatgagctcc aattwtgtac tatactgctt tccagactcg       480
     tatacttttc tcgagagcca tccccacacg ttctctgtta tatttaagtc cggagagtac       540
     ggcggccact ccaggacatc aacgttttgg cccwgwatcm acgattttam agatcgggca       600
     gtgtggaagc tggcgagtcc acggtattac gagtcataaa aaaagcggaa cacttgaaaa       660
     gactaaaact aagaaaaaac gcaactaaat aagttacgaa aggaaatgcg cctaaatttt       720
     gctcgctcgc atatgacatg gtctaaggag tggcgctttg tagtcttttc cgatgaaaat       780
     aaatttaacc tasaaggccc tgacggctat aattactctt tccatgacag gcgtaaagaa       840
     gagcatattt tagatcgttt acatagccgg gtaggtggcg caatggtata gggagccgta       900
     tcctattatg gcacctatga gttgcgattt ctcaccccga aaatgaacgc cgtggcgtat       960
     aataatcttt taaaaacggc tttcccacat ttccaaaatt gttttggaaa tcttaaaagg      1020
     cgttttcaac acgacaacgc tccaatccac actgcccgat ctgtaaaatc gtggatacag      1080
     ggccaaaacg ttgatgtcct ggagtggccg ccgtactctc cggacttaaa tataacagag      1140
     aacgtgtggg gatggctctc gagaaaagta tacgagtctg gaaagcagta tagtacatat      1200
     tggagctcat cgacgagatt aaaaaagctt ggtcttcaat ttcattacaa tacattgaga      1260
     aattgtacga gtcacttccc agcaggatct gtgaggtcct ggaaaacggg ggcgggacca      1320
     cccactatta atttgattag aaaataagta aataataaga taaaacataa aacaatacta      1380
     gttgttaagc attaagtgaa aattcattaa atttaagcag ggggcgctaa tctgatgacg      1440
     caaaattaaa ttcatatttt tggwatacat tttcttttca aataaaaaaa tattattgtt      1500
     atacttatca ttatgtacct tatcttattt tgaagaatat tattaaaagt atcgtcaaaa      1560
     aaagttttat ggctttagcc ttgatagttt ggataatatt ggacattacc cgagaatgct      1620
     cagggggcgc taatctgatg acgcgcagtg                                       1650
//
ID   Mariner-15_DK repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-15_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1646
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1208-1208 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ~300-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1646 BP; 584 A; 295 C; 295 G; 471 T; 1 other;
     cactgcgcgt caccagatta gcgcccccct tggtgctcgc gtttgaagta aaatattatc        60
     aaaactatta aagattgaac tgtacaatta ttatccaata taattcgatt aattctctaa       120
     ataaaaacat atattagaac gcagttggta tttgcataga attgtattaa attaaaaact       180
     aaagaaacac gtttatttgg aagaaaaaac tgcgtcatca gattagcgcc cccaaaatat       240
     aaatttaaac atctttctta acttgctgag cacagcaact attttttttt tgctgttaaa       300
     ttaaacattt ttcttcaatt tgacatacaa tatgggcaga ggaacaatct tatcttcgga       360
     ggaaaaatcg aaaatcgaag cgtttaatga atgtggactt tctcttcaca aaatcgtcga       420
     aaaaacgaga agacatcgca aaaccattgc aaattttctt caaaataaga aaagctatgg       480
     aaaaaattac aaaggaggta ataacagtgt tattagttcc gcagatcgca gtgctatact       540
     tcgagaggcg tgtaactccc acgactctac cgccaaaata atagaaaaaa cttgtgttaa       600
     gacaataaaa tcgacttttt taaaggtgat caagaaagct gaccctttaa agaagctaaa       660
     actaaaaaaa aaccacccct taaccaagtg cgaacagaaa tccgcctaaa gtttgctcac       720
     acgcatatga catgatccaa tgagaggcat aacgtcgtat tttcagacga aaaaaatgta       780
     acctaggggg tcctgacgga tataattatt atttccacta tttacgcaag gaagagcatc       840
     atctggatcg cttacatagt cgggttggag gagtaatggt atggggagcc atatcctatt       900
     atggcaactg cgaactgcag tttttaaccc caaagatgaa cgcggaaaat tacaattgcg       960
     ttctaaaaac agcatttccc gtttttaaaa acttatttsg aaatctgaaa tagcattttc      1020
     agcacgacta agccccaatc cacagagccc ggtccgtaaa actatggaat caaaaggaaa      1080
     atgtcagtgt cctggagtgg cccccatact ccccagacct gaacataata gaaaacgtct      1140
     ggggatggtt agctaggaag gtgtacgagg gtggcaagca atatgctacc aaggaggatt      1200
     taattcacag tataaaacag gcctggtcaa caataacgtt ggaatatttc aaaaacttgt      1260
     atgactctct ccccaatcga gtttgtgaag tccttgtaaa caagggaggg gcaacccatt      1320
     attaaatttc cttaaaaatg attaaactta atcataaaat tgttaaagat agtattttgt      1380
     aagaacttta tcaaaaaaag ttaagttaat gtaggtggcg ctaatctgat gacgcagttt      1440
     tttcttccaa ataaacgtgt ttctttagtt tttaatttaa tacaattcta tgcaaatacc      1500
     aactgcgttc taatatatgt ttttatttag agaattaatc gaattatatt ggataataat      1560
     tgtacagttc aatctttaat agttttgata atattttact tcaaacgcga gcaccaaggg      1620
     gggcgctaat ctggtgacgc gcagtg                                           1646
//
ID   Mariner-15_DRh repbase;    DNA;    INV; 1663 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1663
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1409-1409 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. ~240-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1663 BP; 572 A; 282 C; 333 G; 467 T; 9 other;
     cacatgcaag aaaaagtatg cgtacaaaca tgtcccgcaa ctttggagtt aaaaaaaaca        60
     tgttgaaaaa aatcttamaa atttmatttt tattttaaca gatagcacat ttattcacct       120
     ctcgtttgat gtaactctta aatttctaac acttatactt ttcccgatat taagaaaaat       180
     gtacaaaatg gcccgatttc gcatcagaaa aagtatgcgt acaaaaaaaa gaaatcaaaa       240
     aggacggtat taaaagcttt taaattgcag ttttkgcatt gataactgwa aatcaaagtt       300
     tgtttacttg tttgtaatca aatctggcat atttatgttg taaccagacg ttatttttat       360
     gatggggaaa aatataaaag aaattgacca tgatttgagg aaagtcatag taaaactacg       420
     tgatgaaggg aaaactattc gggaaattgg tgggatagtt ggcagatcac actgctctgt       480
     acaaagagtc cttgaaaatt tcaatttatc gggttcctgt gggtcaaaac cccgctctgg       540
     tagaccacca aactttctga gcgtgggagg agaagcgttt tgaagacaat aaaaataaat       600
     ccaagcacaa cagcctccca aatggcaaag gatattaagg amawgtataa taacgatcat       660
     catgatgaca mtgttcgcaa aattttgaag aatgaagact ataacagccg tactgcccgg       720
     aagaaaccac tcatatcaca agtcaacaaa atcaaacgaa tggaattctc cagaaaatkc       780
     aataataagc cccaggaatt ctggaaaaaa gtgattttta gcgacgaawg caagttttgc       840
     atattcggga taaaggtccg taagcttgtg tggcgaaaga atggtacagc cctcgacatc       900
     caaaaccgtg ccccaaccgt taagcacggt ggtggtggca ttatggtttg ggtatgtttg       960
     gcggccagtg gagttggaaa tcttgttttc attgagtcca caatggatca caagatgtat      1020
     atcaacatcc taaaagaaaa tttacatcaa agcgtcacga aactgggact ggaggatgac      1080
     ttttggttcc aacaggacaa cgacctaaag cattgtgcca tgaatacgaa gccttgggtg      1140
     ctctataatg tgaaaaatcg gttaaattcg ccaccgcagt ccccagatct caatcccatt      1200
     gagcatttgt gggagctcca ggagcgcagg atccgccagc acaccattac atcaaaggat      1260
     atgctaaaaa aaagtgatgg tctagtaatg gaataaaata tcggtggagg acactacgaa      1320
     attggtccag tcaatgccaa atcggttggc tgaattccta aaacgaaagg ggtacctgac      1380
     ttcgtataaa attcaagtcc ttttgccaaa aatatggagt ttccttttga tttttgtctt      1440
     tgtacgcata ctttttctga tgcaaaatca ggccattttg tacatttttg tgaatattag      1500
     gaaaattata aagtgttaga agggttaaga tacatcaaac gaaaggtgaa taaatgtact      1560
     atctgttaaa ataaaaatta aatttgtaag atttttttca aaaggttttt ttaagctcta      1620
     aagttgcggg acatgtttgt acgcatactt tttcttgcat gtg                        1663
//
ID   Mariner-15_DSuz repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1281
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 129-129 (2022).
XX
DR   [1] (Consensus)
XX
CC   94% identical to consensus. TA TSDs. The consensus is ~98%
CC   identical to that of Mariner-5_DEl  from D. elegans.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..1175
FT                 /product="Mariner-15_DSuz_1p"
FT                 /translation="MSLSMCQIFSRRFAVYEMVKFTLEENWEILKTFFQSG
FT                 ESSTETARKLRSKFGKNKAPSRQFVDSFVKRVRETGSLMDLRARPVRSVEN
FT                 IAAVAESVNDNPSTSTRHRAQELDISRTSLQRILTKDLRLRPYKIQLVQQL
FT                 KPHDHPMRFRFAEWAQERLVEDDHFYRKIVFSDEAHFHLGGYVNKQNCRIW
FT                 GSENPHVVLEKPMHPQRVTVWCGMWSGGIIGPFFFENEEGAAVTVNGVRYR
FT                 GMLEDFFFPRMEEEDIDDIWFQQDGATCHTANVTIDLLRGTFENRIISRNG
FT                 DVNWPPRSCDLTPLDYFLWGAVKDKCYANHPETIDDLKHEIERAIEGHTIE
FT                 NVFKNWVDRMGYCKASRGSHMNEVVFHT"
XX
SQ   Sequence 1281 BP; 344 A; 273 C; 325 G; 339 T; 0 other;
     cagggtggcc catctagcgt ttgctttttg aactatcgat aattttgact ttgacatttc        60
     gaatgtcatt gtcaatgtgt cagatattta gtagaaggtt tgcggtttac gaaatggtta       120
     agtttacgct cgaagaaaat tgggaaatat tgaaaacttt cttccaaagt ggagagtctt       180
     caaccgaaac tgcaagaaaa ttgcggtcaa aattcggaaa aaataaagcg ccttccaggc       240
     agtttgtgga tagttttgtg aagcgtgtgc gtgagactgg atcgttgatg gatttacgcg       300
     ctcgtccagt tcggtcggtc gaaaatatcg ctgcggtggc cgaaagtgtc aatgacaatc       360
     cgtcgacgtc aactcggcac cgtgctcaag agttggacat ttcgcgcact tccctgcaac       420
     ggattttaac caaagacctc cgtctaaggc catataagat tcagttggtt cagcagctta       480
     agccgcatga ccatccaatg cgttttcggt tcgcggaatg ggctcaggag cgcttggtcg       540
     aagatgacca tttttaccga aaaatcgtgt tttctgatga ggcccatttc cacctcggtg       600
     gttatgttaa taagcaaaac tgtcgcattt ggggctcaga aaatccacac gtcgtcttgg       660
     agaagccaat gcatccacaa cgagtgactg tttggtgcgg tatgtggtcg ggtggcatca       720
     ttgggccgtt tttctttgaa aacgaggaag gagccgccgt aaccgttaat ggtgtccgct       780
     atcgcggcat gttggaagac tttttctttc cccgaatgga agaggaagac atagacgaca       840
     tatggttcca gcaggacggc gctacgtgcc acacagccaa cgtcacaatc gatcttttgc       900
     gcggtacgtt cgaaaatcgc ataatcagcc gaaacggcga tgtcaactgg ccgcctcgca       960
     gctgcgattt gaccccgttg gactattttt tgtggggtgc cgtaaaggat aagtgttacg      1020
     ccaaccaccc agagacgatt gacgacctaa agcacgagat tgaaagggcc attgagggcc      1080
     ataccatcga aaatgtgttt aaaaattggg tcgaccgaat gggctactgt aaagccagcc      1140
     gaggcagcca tatgaacgaa gtggtgtttc atacataagc cgcaatgttg aggctatcca      1200
     ataaaaaaaa aattttgaaa aatataagct cgttgttttt tatagcggtt ttaaaacgca      1260
     aatctttcgt gggccaccct t                                                1281
//
ID   Mariner-15_HSal repbase;    DNA;    INV; 1320 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 19.04, Created)
DT   10-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1320
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 856-856 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1084
FT                 /product="Mariner-15_HSal_1p"
FT                 /translation="MEKSEFRVLIKHCFLMGKNTVQAKQWLDKCYSDSAPS
FT                 RQMVEKWFADFKGGRTNTDDAERSGRPNSAVIPENIKKVHKIVLADRKLKL
FT                 REIADTLKISEGSVFTILHEHLSMRKLCSKWVPRLLTVNQKQQRVDDSAGC
FT                 LELFQRNKKDFLMRYVTMDETWIHHYTPESNRQSAEWTATGETRPKRPKTQ
FT                 MSAGKVLASVFWDAQGILFIDYLEKGRTINTEYYMALLVRLKEEIAKKRPQ
FT                 MKKKKVLFHQDNAPSFTRIMHRVASRSQQWQNCTNCTFNCFPIHRILRIWL
FT                 PATTTCLQA"
XX
SQ   Sequence 1320 BP; 421 A; 255 C; 290 G; 354 T; 0 other;
     taacacatca ctcaataagt tcgtaggatg acatatagat ggcgctacta ttgacaaatc        60
     catatgattt ttaggaagta ctaaccttca aatgatacgt gtcaaaattt catgacaatc       120
     ggacgtttag ttcacaagtt acagtggttt tagtgacgct actgttttaa ttttgaaaac       180
     aatggaaaaa tctgagtttc gtgtgttaat aaagcattgc tttttaatgg gaaaaaatac       240
     cgttcaagca aagcaatggc ttgacaagtg ttattcggac tctgctccat cgagacaaat       300
     ggtagagaag tggtttgctg attttaaagg cggccgtaca aataccgatg acgctgaacg       360
     ctctggtcgc ccaaattcgg cagttattcc agaaaacata aaaaaagtcc acaaaatagt       420
     tttggccgat cgtaaattga agttacgtga gatagctgac accttaaaga tatcagaagg       480
     cagtgtattc accattttgc atgaacattt gtccatgagg aagctctgtt cgaagtgggt       540
     accgcgtttg ctcacagtca atcaaaaaca gcaacgcgtc gacgattcag cgggctgttt       600
     ggagctgttt cagcgcaata aaaaggattt tttgatgcgg tatgtgacaa tggatgaaac       660
     atggatccat cactacactc cagagtcaaa tcggcagtca gctgagtgga cagcaaccgg       720
     cgaaacccgc ccaaagcgac caaaaacgca aatgtcagct ggtaaggttt tggcctccgt       780
     attttgggat gcgcaaggta ttttattcat tgattacctt gagaaaggaa gaaccatcaa       840
     taccgaatat tatatggcgt tattggtgcg tttgaaggaa gaaattgcga agaaacgacc       900
     ccaaatgaag aagaaaaaag tgctctttca ccaggataat gcaccgtctt tcaccaggat       960
     aatgcaccgt gtcgcaagtc gctcgcaaca atggcaaaat tgcacgaatt gcactttcaa      1020
     ttgcttcccc atccaccgta ttctccggat ctggctccca gcgactacta cctgtttgca      1080
     ggcctaaaaa gaatgctcca gggaaagaga tttggctcca atgaagaagt gattgccgaa      1140
     actgaagcct attttgaggc caaagataaa tcgttctaca aaaaaggcat cgaaatgtta      1200
     gagaagcgtt ggaatcaatg tatcactctt gaaggagact atgtagatga ataaagtcaa      1260
     attttgccta aaagttgttg ttttattagt catcctacga acttattgag tgatgtgtta      1320
//
ID   Mariner-15_LHu repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.02, Created)
DT   17-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-15_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1284
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 373-373 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 92% identical to the consensus. ~30bp TIR.
XX
SQ   Sequence 1284 BP; 416 A; 261 C; 277 G; 330 T; 0 other;
     ttaggtctat aacttgaaac ccgccctcta gcgataaata gctgtaactt tgacaatcgt        60
     caactgtaat ggctgaacaa ggcatcattt atagttttga catctgtcaa taatattcag       120
     tatataaaag tttgtgtttg tgacaacaac atagtttttt actgcgaaga aaatgtctga       180
     atttcaacca aataagcatc atttgcgcga agctttgctt ttctgtttca atttgaagaa       240
     aactgctgct gaatctcatc gaatgcttgt tgaagcttat agggaacttg ctctatcgga       300
     aacaacttgc aaggaatggt ttcgacgatt caaacttggt gattttgaca cgaatgataa       360
     agaacgtcca ggccagcaaa aaaaattcga agatacagaa ctgcaagcat tggtggatga       420
     agatccatgt caaacacaaa atcaacttgc agaaacgttg gatgttactc aagcagccat       480
     ttccaagcgt ttaaaagcca tacaaggaag gaagatgggt gccatatgaa ctgaaagaaa       540
     gagacatcga aaggcgaaaa accatctccg aaatgctgct tgccaggcaa aaaagaaagg       600
     ggtttttgca tcgaattgtg actggcgatg aaaagtggat ctatttcgat aaccccaaac       660
     gccgaaaaac catttgcgac ccaggccaac catcgacatc gacgccaaaa cgcaatattc       720
     atgggaagaa ggccatgctc tgtatttggt gggaccagaa ggaccagaag ggtgtggtat       780
     attatgagat actgaaacct ggtcaaacag tcacagggga tctctaccaa caacaaataa       840
     tccgtttgag ccgagcattg cgcgaaaaac gaccagaata tgagacaaga cagcataaag       900
     tgatcttgct tcatgacaac gctcgacctc acgtcactaa ggctgtcaag gaaacattgg       960
     aagcacttcg ctgggaagtg ctaccccatg cggcttattc accagactgt gccccttccg      1020
     actaccactt gtttcggtcg atggcacacg cacttgctga ggaacacttc aactcttatg      1080
     aaagcgtcga aaaatgggtc tctgactgga tagcctctaa agatgagtcg ttctttcgcc      1140
     gtgggatccg cttattgcca gaaagatggg aaaaagtcat atctaacgat ggccaatact      1200
     ttgattgatg tatttttttc atttgtttct taaataaagg cttaattttt gcaaaaaaag      1260
     gcgggtttca agttatagac ctaa                                             1284
//
ID   Mariner-15_LMi repbase;    DNA;    INV; 1564 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1564
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3255-3255 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           313..1386
FT                 /product="Mariner-15_LMi_1p"
FT                 /translation="MDAKRTEIPVEVRKNIIELSNKGFSLRKIGEIVRRSH
FT                 ASVQTVIRNYRDRGSVENKARCGRPPKLSNRERRHIIRKVNADPRITATEL
FT                 ALDVANTSGNSVHPITVRRLLHNHGFESRTARKKPFISRVNEQKRLEFATL
FT                 HRNKDSTFWNTVLFTDESKFNIFQCDGQQKVWRKRNESWKKRNLVPSVKYG
FT                 GGNILVWGCMSGAGVGNLVFIEGIMDKWKYLTILKENLKQSAEKLGLGTDW
FT                 VFQQDNDPKHTAIVVKEWLLYNVPKQLHSPPQSPDINPIEHLWGELKRRIK
FT                 NYIKSKDDLKAALVKEWNNVTPAYTKTKCGIHASTFGSCDRSRRRQYKILM
FT                 DLKVKNITVYVYFCT"
XX
SQ   Sequence 1564 BP; 517 A; 272 C; 375 G; 400 T; 0 other;
     cagtcggaca ctaaagtcta catacacccc caatttgtag catgtggcgt acagcctgga        60
     tgcaaagagg tagacgtgca attctgtgcc tgcgtccacg tccacaataa cataaaccaa       120
     cgtcttcagg ccggtatcgt gcactgcaag cgtgatagat gcagcagtgt ttgtttactg       180
     gggcacaaaa gtcaacatac acttcgggtc tgtcgttagt tgcaagagag acgttgcagt       240
     gaacacagtg caagtggtgt cgtttgttta tataatagac gtgtattgca atacataagt       300
     cgatcgcgta acatggatgc aaaaagaacc gaaataccgg tggaggtgag gaagaatatt       360
     attgagctca gtaataaggg cttttcactg cggaaaattg gggaaattgt tagaaggagc       420
     catgcaagtg tccaaaccgt aataagaaat tacagggatc gaggaagtgt cgaaaacaaa       480
     gctagatgtg gacgaccacc aaaattatct aacagggagc gccgacacat cattagaaaa       540
     gtgaatgcgg atcccagaat tacagctacg gagttggcat tagatgtcgc aaatactagt       600
     ggaaatagtg ttcatcccat aacagtacga agactgctgc acaatcatgg atttgaaagt       660
     agaacagcaa ggaagaaacc gttcataagc agggtaaatg aacagaagcg cctagaattt       720
     gcaactctgc accgaaataa agattccaca ttttggaata cagtactttt cacggatgag       780
     agtaagttta acatcttcca gtgtgatgga cagcaaaagg tgtggcgaaa aaggaatgaa       840
     agttggaaga agagaaatct tgtcccatca gtgaagtatg gtggtggaaa tattcttgtg       900
     tggggttgca tgtctggagc tggagttggg aatttggtat ttattgaagg tattatggat       960
     aaatggaagt atctcaccat cttaaaggag aatctgaagc aatctgcgga gaaactggga      1020
     ctaggaacag actgggtgtt tcagcaagac aatgacccca agcatacggc cattgtcgta      1080
     aaagaatggc tactttacaa tgtaccaaaa cagttgcatt cgcctccaca gtcaccagac      1140
     attaacccaa ttgaacacct ttggggagaa ctaaagcgta ggataaaaaa ctacatcaaa      1200
     agcaaagatg atttaaaagc agccttagtg aaagagtgga ataacgttac acctgcgtac      1260
     acaaaaacaa aatgtggaat ccatgcctcg acgtttggaa gctgtgatcg aagcagaagg      1320
     cggcaataca aaatattaat ggacctgaaa gtgaagaaca tcacagtgta tgtttacttt      1380
     tgtacctgac cgctgttcca tttgtatgct caagatgtca gtatatggaa ttattattaa      1440
     ttatgtagtg tatatgttgt ttttcagttc ctaacatgtc tgtttatgtc acagaaagtg      1500
     aataaatatt attttgactt caagtgttat ttttagggtg tatgtagact ttagtgtccg      1560
     actg                                                                   1564
//
ID   Mariner-15_RPr repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1316
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3262-3262 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1242
FT                 /product="Mariner-15_RPr_1p"
FT                 /translation="MQQSIEQRYAIKFCVRLGKSGASTLEMIQQAYGRESL
FT                 SQAQVFRWHKMFKEGRESVEDEPRAGRPSTSRTAENEQRVRHLLNTDRRLS
FT                 VRMIAEQLGMDKMVVHKIISEDLGMRKICAKLVPKVLTDVQKQNREAVSKD
FT                 LLERIEEDPHFFDNVITGDESWFFQYDPETKRQSNEWHTPQSPRQKKARMS
FT                 KSRMKAMLIVFFDKNGVVHSEFVPEGQTVNGAFYVEVLKRLKRRVNRVRPE
FT                 ISANWKLHHDNAPSHTCFVVTDHLTKNGIVTIPQPPYSPDLAPADFFLFPK
FT                 VKTALKGRHHGTLDDVKRACTHALKDVSVGDFQGAYEAWKRRLQKCVHAQG
FT                 AYFEDY"
XX
SQ   Sequence 1316 BP; 371 A; 305 C; 331 G; 309 T; 0 other;
     cagggtttgt attttaagta atgagaatat ttttgtcctg acgcggctgt acgccagagg        60
     gcgctccgac cggttggagt cggtagtggg gccttcgacc ttgataacgc ttcactccgc       120
     agtcgccgct ggctttggtt gaggcaggat cacgcgtggc gtagacgtct tcaaaaaagt       180
     gtgtgcaagt tcaaaatgca acaaagcatt gaacagcgtt acgcaatcaa attttgcgtt       240
     cgccttggaa aatcgggtgc atcaacgctg gaaatgattc agcaagcgta cggcagggaa       300
     agcttatcgc aagctcaagt ttttagatgg cacaaaatgt ttaaagaagg ccgggagagc       360
     gtggaggacg agccccgtgc aggtcgcccg tcaacatcaa gaaccgcaga aaacgaacaa       420
     cgtgtgcgac atttgctgaa cacggaccgg cgtttaagtg ttcgcatgat cgcagaacag       480
     ctaggaatgg ataaaatggt tgtgcacaaa atcatcagtg aggatcttgg gatgagaaag       540
     atttgcgcca aactcgtgcc gaaagtttta acggacgttc aaaagcaaaa ccgtgaggcc       600
     gtttcaaaag atcttttgga acgcattgaa gaagaccctc atttttttga caacgtcatt       660
     accggggatg aaagttggtt ctttcagtac gaccccgaga caaaacgtca gagcaacgaa       720
     tggcacactc cgcaatcgcc tcgacagaag aaagctcgca tgtccaagtc gagaatgaaa       780
     gcaatgttga ttgtcttctt tgacaagaac ggtgttgtcc actcggaatt tgtgcccgaa       840
     ggacagacag tcaatggtgc cttctacgtg gaagtgttaa aaagattgaa gcgacgggtc       900
     aaccgagtga gaccagaaat ttccgccaat tggaagctcc accacgacaa tgcgccatct       960
     cacacctgct tcgtggttac cgatcacttg acaaaaaatg gcatcgtaac aattccacag      1020
     cctccctaca gccccgacct tgccccagca gactttttcc tcttccccaa agtgaaaacc      1080
     gccctcaaag ggcgccacca cgggaccctg gatgatgtca aaagggcttg cacgcatgct      1140
     ctgaaggatg tttcggttgg tgacttccag ggagcgtacg aagcgtggaa acgtcgcctg      1200
     cagaagtgtg ttcatgctca aggagcatat tttgaagact actaaagttt tgtagcgata      1260
     tctctaataa attatttttt gtggacttat tctcattact taaaatacac accctg          1316
//
ID   Mariner-15_SIn repbase;    DNA;    INV; 2688 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-15_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2688
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 331-331 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. ~650p TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(411..818,1002..2024)
FT                 /product="Mariner-15_SIn_1p"
FT                 /translation="MSPLSMQITTILSETCCWFKNISVRARVRACVRACVR
FT                 ACVRVCACLRTARIRTPWFVNSTVFKDSEPSLWCVCVCVCVYLHTTRIRTP
FT                 WFVNSSVGGVPNSYYTVFRYCLKRLFGTPPTEGRAKKLSRKKNSHTMLLIM
FT                 TTINPEKAAQVVALIEDGRSRRYVAEALDLSVSTVQRAYARYLDTNSFQRR
FT                 SGSGRPRCTTDNDDRFIVLNSLRDRHRTAVQIRNNLRDVRNTNVSVNTVRR
FT                 RLAEQNLFSRKPATVPLLTRRHRVARLNFAHEHRDWTYADWSKVLFSDESR
FT                 FCLYSPDGRERIYRRSGERIADCTVSQRRSYNGGGVMIWAGISANAHTDLH
FT                 FFDRNMNADVYVEEVLIPYVVPYAPFIGDNFLFMQDNARPHIARRVLDFLD
FT                 EVGINRLDWPANSPDLNPIEHLWDNLGRKVRNHVPAPQTLRELQRVLENEW
FT                 NTITQDEIKGLIRSMPHRMNEVIRARGGHTHY"
XX
SQ   Sequence 2688 BP; 790 A; 535 C; 579 G; 784 T; 0 other;
     cactgcccac cgaaaaaagc ggtacactaa aaatttagga aaaatttacc aaactttaaa        60
     cgcttgtaaa acaggaaata tttatgatac aggggtgttt caaaaaagga attaaagctt       120
     gaaaccagta ctttgagaaa cttttaatgc cgattaagtg gcatgattaa tttgctaata       180
     gccgatgata gaacgaaaac ttgcaaaatc gataaataga acgtgcagtt tctagagttg       240
     tgtggagtga agcagttgac gtaactcaat gaggtaaaaa gcgcgtgaaa gtttgaattt       300
     ttcccttcaa aatgcgattt tgcggaactc gatacgataa tttttcgcta agttatgcca       360
     atttgaagaa aagttgtttt ttacgagata ataatgaatt atgaattgca atgtcgccgt       420
     tatcaatgca aatcactaca attctgtccg agacatgttg ttggtttaaa aacatatccg       480
     tgcgtgcgcg tgtgcgtgcg tgcgtgcgtg cgtgcgtgcg tgcgtgcgtg cgcgtgtgtg       540
     cgtgtttgcg taccgcgagg ataaggaccc cgtggttcgt caattccaca gtatttaaag       600
     actccgaacc ctccttgtgg tgtgtgtgtg tgtgtgtgtg tgtgtatttg cataccacaa       660
     ggataaggac cccgtggttc gttaactcct ctgtcggcgg tgtcccgaat tcgtattaca       720
     ctgtgttcag atactgtctc aagcggttgt tcgggacacc gccgacagag ggccgagcaa       780
     agaagctctc tcgtaagaaa aattcgcata caatgctata aatgtaatta atgcatccgc       840
     ggaaagtcta gcagattttt gactgtgcca aaatctttaa aggaaatctt cataaacttg       900
     tgctgtctcg ggaaattttt ttccttgatt ttttcctttc gagacgtttt gtgcgacttt       960
     aattcaaatt ataattaatt ttttcgcctt cgaattactg attaattatg acgacgataa      1020
     atcctgaaaa agctgcccaa gttgttgctt taattgaaga tggcagaagt cgaaggtatg      1080
     ttgctgaagc acttgatttg tcagtgtcaa ctgtgcaacg tgcttacgct aggtacttag      1140
     acaccaattc tttccagaga aggtctggtt cgggacgacc tcgatgtacc acagacaatg      1200
     atgatcgatt cattgtttta aattcattaa gagatagaca tcgaacagct gtccaaattc      1260
     gaaataattt aagggatgtc cgcaacacga atgtatccgt taacactgtt cggagaagat      1320
     tagcggaaca aaatctgttt tcgcgtaagc cagcgactgt acctttgctt acacgtcgtc      1380
     atcgtgtagc tcgactcaat tttgcacatg agcatagaga ctggacttac gcagactgga      1440
     gcaaagtact ctttagcgat gaaagtcgtt tttgtcttta ttctccagat ggacgagaac      1500
     gaatttatcg tcgcagtgga gaacgtattg cagattgcac tgtaagtcag aggcgtagct      1560
     acaatggagg cggtgtaatg atttgggcag gaatttcagc gaatgctcat acagatctgc      1620
     atttctttga caggaacatg aacgcagatg tatacgtgga agaagtactc attccatacg      1680
     ttgttccgta cgcacccttc attggagata atttcttgtt tatgcaagac aatgctcgac      1740
     cacacattgc gagaagagtg cttgatttct tggatgaagt tggcataaac cgactcgatt      1800
     ggccagcaaa tagtccagat ttaaatccca tagaacactt atgggacaac cttggtagga      1860
     aagtacgaaa tcacgtacct gctcctcaaa cactgcgaga acttcaaaga gttcttgaaa      1920
     acgagtggaa tacgataacg caggatgaaa ttaaaggact aataagaagt atgcctcatc      1980
     gtatgaatga agtaatacgc gcacgaggag gtcatactca ttattagtgc acatgtgcgc      2040
     gcacgcacac acacatacca caaggagggt ttggagtctt taaatactgt ggaattgacg      2100
     aaccacgggg tccttatcct tgtggtatgc aaacacacac acacacacgc acgcacgcac      2160
     gcacgcacgc acacgcacgc acgcacgcac gcacgcacgc acgcacgcgg atatgttttt      2220
     aaaccaacaa catgtcttgg acagaattgt agtgatttgc attgataacg gcgacattgc      2280
     aattcataat tcattattat ctcgtaaaaa acaacttttc ttcaaattgg cataacttag      2340
     cgaaaaatta tcgtatcgag ttccgcaaaa tcgcattttg aagggaaaaa ttcgaacttt      2400
     tacgcgcttt ttacctcatt gagttacgtc aactgcttca ctccacacaa ctctagaaac      2460
     tgcacgttct atttatcgat tttgcaagtt ttcgttctat catcggctat tagcaaatta      2520
     atcgtgccac ttaatcggca ttaaaaagtt tctcaaagta ctggtttcaa gctttaattc      2580
     cttttttgaa acacccctgt atcataaata tttcccgttt tacaagcgtt taaagtttgg      2640
     taaatttttc ctaaattttt agtgtaccgc tttttttggt gggcagtg                   2688
//
ID   Mariner-16_AEc repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   22-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 559-559 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1209
FT                 /product="Mariner-16_AEc_1p"
FT                 /translation="MEINKEKIRYILQYYYDKGKNAAQACEKICAIYGEDT
FT                 LSKSAARKWFARFRTGNFDVKDEPRSGRPITEKSDEIMEKVERDKHVSTVE
FT                 IARELGIDHKTVLNHLHKAGYKKKLDVWVPHELSVKNMMDRINICDTLLKR
FT                 NEIEPFLKRMITGDEKWITYDNRTRKRSWIKEGEKAQAIAKPGLTTKKVML
FT                 CVWWDWKGIVHYELLSPDQTINSELYCEQLERLQQAIERKRPELINRRGVV
FT                 FHHDNARPHTSLITRQKLRELGWEVLMHPPYSPDIAPSDYHLFRSLQNSLN
FT                 GVKLASKEACENHLKQFFDQKPQKFYRDGIMALPQKWQNIIENNGAYLV"
XX
SQ   Sequence 1291 BP; 437 A; 237 C; 287 G; 329 T; 1 other;
     tattgggtgt gggaaaaagt tcgtagcgtt tttcccacta gatggcatta aatgctcagc        60
     antcggtaac tactaatcgc atcgacaaca ctagacgtgc gtttaaaaag tgacatttca       120
     acctttgttt tgagccgaaa aagattgaaa tcggtgaagt ggatcaaaag ttattttatt       180
     ttgaaaatgg aaataaataa ggaaaaaatt cgctacattt tgcagtatta ctacgataaa       240
     ggcaagaacg ctgcacaggc ttgtgaaaaa atttgtgcta tttacggtga agatactcta       300
     tcaaaatcag cagcacggaa atggttcgct cgttttcgta ctggaaattt cgatgtgaaa       360
     gatgaacctc gctccggtcg accaatcact gaaaagtccg atgaaatcat ggaaaaagtc       420
     gagcgtgata agcatgtgag cactgtggag attgccaggg aactaggcat cgaccacaaa       480
     acagttttaa atcatttaca caaagctgga tacaaaaaga agctcgatgt ttgggttcct       540
     cacgagttga gtgttaagaa catgatggac cgaattaaca tttgcgatac gctactgaaa       600
     cggaatgaaa ttgagccatt tctgaagaga atgataactg gtgatgaaaa atggatcacg       660
     tacgacaatc gaactcgcaa aagatcgtgg ataaaggaag gagagaaggc acaagcaatc       720
     gcaaaacctg gattgacgac gaagaaggtg atgttgtgtg tgtggtggga ttggaaggga       780
     atcgttcact atgagctgtt atcgcccgat caaacaatta attccgaact ctactgtgaa       840
     caactggaga gattacaaca agcaattgag aggaagcggc cagaattaat caataggagg       900
     ggtgtcgtct tccatcacga caacgctcga ccacacacat ctttgataac tcggcaaaaa       960
     ttgcgagagc ttggctggga agtcttaatg catccaccgt atagtcctga catagcaccc      1020
     tcagactatc atttgtttag gtctctgcag aactctctta atggtgtaaa gctggcttca      1080
     aaagaggcct gtgaaaatca cttgaagcag tttttcgacc agaaaccaca gaagttctat      1140
     cgcgatggga ttatggctct gccccaaaaa tggcaaaata ttattgaaaa taatggagca      1200
     tatttggttt aaataaattg attttaatac tctaagaaaa acacttgaat tttactaaaa      1260
     aaccgccacg aactttttcc cacacccaat a                                     1291
//
ID   Mariner-16_DAn repbase;    DNA;    INV; 941 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-941
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 272-272 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 28-bp TIRs. TA TSDs. Likely
CC   non-autonomous.
XX
SQ   Sequence 941 BP; 258 A; 206 C; 226 G; 251 T; 0 other;
     cagggtccgg cactcgaagt gtaaccaact tcagaccgct cccgcagctg acgcgcgggc        60
     gtcagctgtc ggtgagttag ttaaatgaca gtttagagta ttgtttacaa gcgcatgtaa       120
     gcattttgcc gagatcacac gagaaaaaaa gttgcttcgc ttcacacgag cgaaggagtt       180
     gcttcgcttg gccgaaagtg gtcaatttcc aaacattgtg ttttctgacg agaaaatttt       240
     tacaattgag caattcgtaa actcccaaaa cgatagggtt tacttgaccg accgttcata       300
     cgagaatttg agtcatcgat tggccactag gaggcagcac ccgccacaga taatggtttg       360
     ggccgctgta accgcagatg ggcgctctcc aatcgttttc atcgagcctg gcgtcaaggt       420
     aaatgcgcaa tattatcggg aaagtattct ggaggttgct ttgaagccgt gggcagataa       480
     acattttggt ggcagaccat ggacgtttca acaggactcg gcaccgtctc ataaagctcg       540
     agtgaaccaa gaatggctga aaaacaacgt tccgaacttc ataacgtcca cacaatggct       600
     ctcgaattca ccagacgcga atcccatgga ttattctctt tgggccattt tggagagcaa       660
     ggtccgaact aaaagataca ctagtctcga tgcgctgaaa aaagctgttg ttcgcgagtg       720
     ggccaaaata cctgcaagtc acattcgggc agcttgcgat tcgtttttgg accgtctcaa       780
     ggccatagtc aaggcaaaag gtggtcatat cgagcaaaag tgaattgttt ctgaattgtg       840
     tattattttt acacattttg tactttgaat tgagtaaaac taattttcca aactgaattt       900
     atggcctttt taattggtta cacttcgagt gccggaccct g                           941
//
ID   Mariner-16_DF repbase;    DNA;    INV; 1681 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-16_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1681
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 783-783 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. 29-bp TIRs. The consensus
CC   is ~95% identical to that of Mariner-14_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1681 BP; 588 A; 269 C; 329 G; 492 T; 3 other;
     cagtcagcgc cacaaaaaaa gccgcactta aaaaaatttg gaaatcgtgc agtcactatg        60
     cttgggttcc cctaaatttt attctctggg cattattttt ttaggggggt ttcccttgac       120
     tattttcgac ataatttcgt catttgaaga gcgctgttgc ttaagttgct tttggtagaa       180
     ttttttttgt aaagacaccw gtaaaatcat gccaaagcaa aagcagttca ctgatcgcga       240
     taaagaaaaa attattttat tggctgaaca aaatgwgtca aatckgcaaa tagcggctga       300
     aacacatttc aatgaaagct cagtgcgtcg ttttttaaaa aaaatatcgt cagacaggtg       360
     aattaaaaag gaaaaaaggg acaggtgaaa aaaaatgcac cacgtcacgt gaagatcgct       420
     ttattatgag aacgagcctg cagaatcgtt tcaaaactgc agtgcagata agatctgagg       480
     tacatgaaca gttttcaaaa gatatttcgg agcgaactgt tcaacgtcgg cttaactcta       540
     tgggaatgct cgcaagacca ctctgcaaaa aagccacttt tgaatccgcg aatgaaaaaa       600
     aatcgtctaa actgggccaa ggacaaggaa aattggactg cttctgattg gtcaagagtg       660
     ctattttcag atgagtccaa atttaatctc attggatctg atggaatcct caaggtgcgc       720
     cgtagacgtg gggaacgtta ttctgaaaat tgctgcatag ccacagtaaa gcattcaccg       780
     tatgttatgg tatggggatg catatccaaa tataaaacgg aatcaatttt aatggttcag       840
     ggtatggtca atgcagaaaa atacaaagaa ataattttaa gaggagttgt gcctagcatt       900
     gagtccataa gtgaagaaga agatgaaccc atttttcagg atgattctgc accttgccat       960
     cgagcgcgat ctgtgagtta ctcagtgtcc gattattatc aaaacaactt tttcagttaa      1020
     atttaacatt tttctatcta aagataacaa atttgaagga agaattgggc attaagtcct      1080
     tagattggcc aggaaacagc ccagacctta atccaatcga gaatgtttgg gcctatatgg      1140
     gtgccaaaat aagaaagcga aagcccaaaa ctatggagga gctaacacat attatagaaa      1200
     aagtatggat acacgatata acgaaggaat atttgtgttc catttacgat tctatgccca      1260
     atagggtaaa atctgtaatt aaggccaaag gcggcatttc taagtattaa gctaaattaa      1320
     aaaatatgtc tattgttaaa ttgcccagaa ttaaaatttt tgttatagtt agtaaggtgt      1380
     tcaattggaa aaaaatagtt tttgttcaat tttttcatta ttataagttt tatgatttgt      1440
     ttccttaagt ttgccataat agtgaaaagt cgttaaaact agggtgaaac caaaaaaaac      1500
     atttttttaa tattaaaaac aaatttaaaa taaaaattgg tatgcacttt tattaacata      1560
     ccatcagtta acttgttaaa aaaaaattgg gcgaatccgc aatcatataa tgaaacaaca      1620
     ggccctgaaa gttgaaaatt cgtaaacctt caaagtgcgg ctttttttgt ggcgctgact      1680
     g                                                                      1681
//
ID   Mariner-16_DK repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-16_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1639
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1209-1209 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 24-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1639 BP; 562 A; 265 C; 290 G; 520 T; 2 other;
     cactccgttt cacttgaata gcacaaaaac attttcataa ttacttgttc atatctcagc        60
     aactgcttga tctaatgaaa tgattgttgg tgttttattt tcgtcatatt atatactctc       120
     ttccaacaaa aattggaagt ctgaaaatgt accgtttaaa tgtaccgtaa ttttcttttc       180
     aaattgcttc aataacttgc acctttttgt ttcacttgaa tagcacattt tagattacgt       240
     gtcatttcag cagccaagga gattgaatca aacacttttt ttgattaatt tatgaatgtt       300
     aaacatagtt taatcatttt gtgcaattat ggatcttgga acgtcactaa gtcacaaaga       360
     acagatctaa atacaaagct atattgattg tgacctttct gtagctaata tagcgaaaaa       420
     aattggaaga agcagaaaag tcgtatataa ttttataaag aacaaacaaa actatggaaa       480
     aaatatgaaa ggtcgcaaaa gttgtgttct tagcgacwca gataagcgtg cgattctgcg       540
     ggaagcctca aattcccatg actctgtgag caaaataagg gaaaagcagg tgttgacgcg       600
     agcaaaacta ctgtttggcg agttatttcg aaagctaaac atctaaaacg tttgaaactt       660
     aaaaaaaacc accgcttaac cccaaacgaa aggaagcacg gttgaccttt tgccgcgtca       720
     atatgtcatg gtgtaacgag cgggagcgcg tagtgttttc tgatgaaaaa agttcaattt       780
     ggaggggcca gatggctgca attattattt tcatgatctg aggaaagaga cgcatcaatt       840
     ggagcgttta catagtcgag taggcggagt tatggtttgg ggagccatat cttaccatgk       900
     gacttgtgag ctccaattct tatcctcaaa catgaacgca aaagcgtatc taaacgtcct       960
     tgaaaaggct tttccaccat tggaaaattt tttcaataat ttgccttgga cattccagca      1020
     cgaaaatgcg ccaatacata ctgcaggtat tgtaaaacct tttttaaaag ataaaaatgt      1080
     tgaaactctg aactggccac catactcgcc ggatctgaat ataattgaaa atgtttgggg      1140
     atggctggcc agaaaggttt atgagtctgg caaacaattt tcaacaaaag aagaactaat      1200
     tgacgccatt cagagggcct gggctacaat atccttagac tacattaaaa gtctatatga      1260
     ttcgatgccc aacaggatct acgaggttat attgaataaa ggaggctcaa cccattacta      1320
     aattaacaaa tatatatgta ttaataatca ctattgaata aaaacacatt tcctaatatt      1380
     taagttcgtt aaatatactt taaaacaaaa aagtgctatt catgtgaaac aaaattgttg      1440
     tgcaattttt taagttttta tgtttttttg ttaacattta ttaattgtta atttaattta      1500
     agttttgtta cttttcttat atttaaaatt gattacacta taaatagaaa cctaaacatc      1560
     agcgagtttt ctttttggtt aaaagatttc aagatttgaa attgcataaa aaagtgtgct      1620
     attcaagtga aacgcagtg                                                   1639
//
ID   Mariner-16_DRh repbase;    DNA;    INV; 1663 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1663
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1410-1410 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1663 BP; 574 A; 250 C; 303 G; 536 T; 0 other;
     cagtcagcac aaaatttatt cggacactgt ctattatcaa gtttaacagc ttatttgccg        60
     gaattttcgt aattttagca ggtttttttt tacttatcat agaaacagtg attttcagaa       120
     gacattacac aaacaaaaat gtaatttttt aaattagcct taaaaatatt aaaagaaaag       180
     caaaaaagtt gctaaaatgt tgcacaaaaa ttattcgtac atttctcatt tattgtgttt       240
     atttctgagc acaacggtaa taggcgattc tttttaaagt agtttagttg aaattacttc       300
     ggagtaattt tcggcgtgct tttttttttg ttttttgtta gtttttatgt gtttttttga       360
     tacgattggt caaaataaaa ggagttcaag atttgtcact agattttcga aaacctatct       420
     taaattcatt tttggaaaat cgtagttatc gcgaaatcgg tcgtattaat ggaaaatcac       480
     cttccacaat acatagtata atccaaaaat acttaaaaac ggaataatga gcttcaaatc       540
     acaagaaagc tagaaggtct aagattctgt actcacgtga gggacggaaa tttatgtcta       600
     cagtcctgaa aaatccgaaa acaacatcta caacaattca aaagaatgta gagcaagcga       660
     aaataaaaaa agtttgggcc aaaaccatcc gaaactacct gtacaaggct ggtttacatg       720
     gcagagttgc tcgtcgaaag caattatttt ctgccatcaa caaaaaaaag cgtttggagt       780
     ttggaaaact gcatataacc acccggattc gttttgggag aacgtagttt taagcgacaa       840
     atccaaattt tacatatttg gacactatgg gccctcgaaa gtgtggagga aaccaaatga       900
     agccatgaat gagaagaact taattccaac tgtttagcat ggtggcggga atgtaatgat       960
     ttgggggtgt gtatcggtag aagaagtcgg tcaaatggtc tttattgacg acaaaattaa      1020
     taagaatatc tacaaaaaca ttttaagcga aaatttgatt ccaagtgata taaaacttgg      1080
     tctagatccg aagacattgt tgtttcaaca agacaacatt cttcgtcttt ggtgcaagag      1140
     tggcttttat atcactgcaa gcagctgaaa acacctcccc agtcacctaa tttaagtccc      1200
     atagaacatg tgtgagatat tcttgagaaa aggattcgga agcacgtcat ttcgtccagg      1260
     gagtccttaa aaactgcatt gatggctgaa tggggtcaaa ttagcgctaa tgagacaagc      1320
     aacttggtaa aaagcatggg tcgacgctta caagctgtca ttgatgttag tggaggaccc      1380
     accaaatatt aaaaatatta aaacatcaag aaatatgttt tttttttaat attatatgaa      1440
     gtgtacgaat aatttctgtg cgtaaaatta tgacttttca agttcattta agaaaatatc      1500
     taattttact gttgaaagtt ccttattttt ttgttaaaat atattctaag aatgttaacc      1560
     ttcacgatga aatataaatt gtttgttttc gttacgtttt tgttgagtta ttaatgaatc      1620
     aaaatcaaaa tcacgggtgt ccgaataaat attgtgttga ctg                        1663
//
ID   Mariner-16_DSuz repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1295
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 137-137 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-16_DSuz_1p"
FT                 /translation="MDQKQFRVLILHCFLMEKNTVQAKEWLEKCYGDSAPS
FT                 ETTIKRWFADFKRGRRDTDDAERSGRPNEAVTPENIKKIHKIVLNDRKVKL
FT                 RELADIVKISKERVGFILHEHLTMRKLCSKWVPRLLTVDQKQKRVDDSEQC
FT                 LAMFKRNKLEFLRRYVTMDETWIHHFTPESKRSSSEWTATGEPRPKRPRAQ
FT                 QSAGKVMASVFWDVRGVIFIDYLEKGHTINSEYYTALLERLKAEIAKKRPH
FT                 MAKKKILFHQDNAPCHKSIKTMTKLHELNFELLPHPPYSPDLAPSDYWLFA
FT                 DLKKMLAGKKFPTNEEVIAETEAYFEAKDKSFYKSGIEMLERRWNDCVALD
FT                 GDYVDE"
XX
SQ   Sequence 1295 BP; 415 A; 243 C; 285 G; 352 T; 0 other;
     acacatgggc tgaaaagtcc cgggcctaac acatagatgg cgctagtttt gttgcggtca        60
     ccatttttac agttaatact aaccttcaaa agataactgt taaaatttca tgatattcta       120
     ttcattagtt tgtgagttat tagtgctaag agtgacgcta cttttggttt tttcaaaaca       180
     atggatcaaa aacaatttcg tgttttaatt ttacactgct tcttgatgga aaaaaatacc       240
     gttcaagcga aggaatggct tgaaaagtgt tatggggact ccgctccatc agaaacaaca       300
     ataaaacgtt ggtttgctga cttcaaacgt ggtcgtagag acaccgatga tgcagaacgc       360
     agtggacgtc caaatgaggc ggtaacacca gaaaacatca agaaaatcca caaaatcgtt       420
     ttgaatgatc gaaaagtgaa gttgcgtgag ttagctgaca tcgtaaagat atcaaaagaa       480
     cgtgttggct ttatattgca tgagcatttg actatgagaa agctctgttc aaaatgggtg       540
     ccgcgtttgc tcactgttga ccaaaaacaa aaacgtgttg atgattccga gcagtgtttg       600
     gccatgttta aacgtaacaa attggagttt ttgcgtagat atgtgacaat ggatgaaaca       660
     tggatccatc acttcactcc ggaatcaaaa cgatcgtcat ctgagtggac agcaactggt       720
     gaacctcgtc caaagcgccc gagagcacaa caatctgctg gaaaggttat ggcctcggta       780
     ttttgggatg tgcgtggtgt aatattcatc gactatcttg agaaaggaca taccatcaac       840
     agtgaatatt atacagcgtt attggagcgt ttgaaggccg aaattgcaaa gaaacgaccg       900
     catatggcga aaaaaaaaat tttgtttcat caagacaacg caccgtgtca caagtcaatc       960
     aaaacaatga caaaactaca tgaattgaac ttcgaattgc tcccacatcc accgtattcg      1020
     ccagatttgg ctcccagcga ctactggctg ttcgcagacc taaaaaaaat gctcgccggt      1080
     aagaaatttc ccacgaatga agaggttatc gctgaaactg aggcctattt tgaggcaaaa      1140
     gataaatcgt tctacaaaag tggtattgaa atgttagagc ggcgctggaa tgattgcgtt      1200
     gctcttgatg gagattacgt tgatgaataa agctaatttt gaaccaaaaa aaacgtgttt      1260
     tctttgttag gcccgggact tttcagccca tgtgt                                 1295
//
ID   Mariner-16_HSal repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 19.04, Created)
DT   10-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 857-857 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1212
FT                 /product="Mariner-16_HSal_1p"
FT                 /translation="MEGKNVYFRCISLFYFRKGKNASQTHKKICAVYGENA
FT                 VSESVCRKWFAKFRCGDFDLQDAPRSGRPVTTDVDQIKALIDSDRHLTTTE
FT                 IGHNLNIDQSTVSRHLRKLGMVNKLDVWVPHELSEKNLMDRISACDLLLKR
FT                 HQNEPFLKRMITGDEKWIVYNNVSRKRSWSKRGEAAQTVAKAGLHPKKVML
FT                 CIWWDWKGIVYYELLPPNKTIDSTKYCSQLAKLKRAIDQKRPELANRKGVV
FT                 FHQDNARPHVSLMTRQKLLRLGWDVLVHPPYSPDLAPSDYHLFRALQNNLN
FT                 NKTFSSLDVLKNHLDDFFAQRSQDFYERGIMKLVERWQKVIEQNGTYLVD"
XX
SQ   Sequence 1290 BP; 377 A; 266 C; 305 G; 342 T; 0 other;
     attgggtcta tgcataattc cgtagcgaaa ttccgacaga tgtcgttcgc agttgttttt        60
     ccgctcgcac atgtgtcaaa catatgaagt gtcgtacatt aagtgaaagc tgaaatttgt       120
     gccgacattt taagaaagta ttcatcgaga tccgtgacgt atacgaagtt taattatatt       180
     ttgaacatgg aaggaaaaaa cgtgtatttt cggtgcattt cgctttttta tttccgaaaa       240
     ggcaaaaacg cgtcgcaaac tcacaaaaag atatgcgccg tgtacggaga gaatgccgta       300
     agcgaaagtg tgtgtcggaa gtggtttgcg aaatttcgtt gcggagattt tgatctccaa       360
     gatgctcctc gctctggtcg gccagtcact actgatgtcg atcaaatcaa ggctttaatc       420
     gactccgacc ggcatttgac gactacagag atcggacata acctcaacat tgaccaatca       480
     actgtttcga gacatttacg gaagcttggg atggtaaaca agcttgatgt ttgggtgccg       540
     cacgaactga gcgaaaagaa tttaatggac cgaatttcag cttgcgattt gctgctcaaa       600
     cgccatcaaa acgaaccatt tttaaagcgg atgatcactg gcgatgaaaa gtggattgtc       660
     tacaacaatg tcagtcgaaa aagatcatgg tcgaagcgcg gggaggctgc tcagacggtc       720
     gcaaaggctg gattacaccc gaagaaggtc atgctctgta tctggtggga ttggaaagga       780
     atcgtctatt atgagctgct gccacccaac aaaacgattg attcgaccaa gtactgctca       840
     caactggcca aattaaagcg agcaatcgat cagaagcggc ccgaattggc gaacagaaag       900
     ggcgttgtgt tccaccagga caacgctaga ccacacgttt ctctgatgac ccggcaaaag       960
     ttattgcggc ttgggtggga tgttttggtg cacccaccgt atagtccgga ccttgcacct      1020
     tcagactatc acttgttccg ggcgctacag aacaatttga ataataaaac cttcagttcc      1080
     ctggacgtcc tcaaaaacca cttggatgac ttctttgccc aaagatctca ggacttctat      1140
     gaaagaggga taatgaagct cgtggagaga tggcagaaag tcattgaaca gaatggaaca      1200
     tatttagttg attaaaatcg ctttttttgc taaatatttt gcgtttgaaa tttattcgat      1260
     tttcgctacg gaattatgca tagacccaat                                       1290
//
ID   Mariner-16_LHu repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.02, Created)
DT   17-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-16_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1291
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 374-374 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 92% identical to the consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..1190
FT                 /product="Mariner-16_LHu_1p"
FT                 /translation="MENKEIRIIYLYEFKLGHTAAEATRNINTAFGEGTVS
FT                 ERTTRRWFEKFRSGDTNLDNLPRGHAPSVIDDVVLKEMVEADPRLTVREIA
FT                 ERLEVDHSTVVRYLNKLGKVKKLDKWVPHEITERDKLRRLEICTSLXFRQN
FT                 TDGILHRIVTCDEKWILYDNRRRSAQWLDANEAPKHIPKPNLHPKKIMVSV
FT                 WWSSKGIVHYSFTKQGEAINSDKYCQEIAIMHQKLCAQQPALVNRHGVLLL
FT                 HDNARPHIAKQTVKKIAELNIEVLPHPPYSPDISPTDYHLFKHLDAFLVGK
FT                 NFNEERSVKNAFKEFIDSRSPDFFRKGIDEHLDHVGKSVLK"
XX
SQ   Sequence 1291 BP; 403 A; 241 C; 272 G; 374 T; 1 other;
     ttaggttggt gcaaataaaa tggccgtttt cagtattttg aactttccat ccctataaat        60
     cacttttctt tcatacagag gacggtgtat gtatactgtg tgaaaagtac atggtccaca       120
     tgtgatttag tgcacataac cttatttata tattgtactg ttagtcatag aagtttgcat       180
     ttaacgccgt gatggaaaat aaagaaattc gtataattta cttgtacgag ttcaaacttg       240
     gtcatactgc agccgaggca acgcgtaaca ttaatactgc atttggtgaa ggtactgtaa       300
     gtgaaagaac gacgaggcgt tggtttgaaa aatttcgttc tggggacaca aacctcgaca       360
     atttgcctcg cggacacgca ccttccgtca ttgatgacgt tgttttgaag gagatggttg       420
     aagcagatcc gaggttaaca gtccgagaga ttgccgaaag actcgaagtt gatcattcaa       480
     ccgtcgtccg atatttaaac aagttgggaa aagtgaaaaa gttggataaa tgggtccccc       540
     atgaaatcac agagagagac aaattgagac gtttggagat ctgcacttct ttgcwgttcc       600
     gacagaatac agatggaatt ttacacagga ttgtgacttg tgatgaaaaa tggattttgt       660
     acgacaaccg ccgacgttct gcgcagtggt tagatgcgaa tgaggctccg aaacacattc       720
     caaaaccgaa tcttcacccc aagaaaatta tggtgtctgt atggtggtct agcaaaggta       780
     tcgttcacta ttcttttacc aaacaaggtg aggctataaa ttctgataag tactgtcagg       840
     aaattgccat catgcaccaa aaactgtgcg ctcaacagcc agcattggtc aacagacatg       900
     gcgtgttgct gttgcacgat aacgctagac cacacattgc aaaacaaacc gttaaaaaaa       960
     tcgccgagtt gaacattgaa gttctccctc accctcccta ttctccagac atctcaccaa      1020
     cagattatca tcttttcaag catctggatg cgtttttggt gggcaaaaat ttcaatgaag      1080
     aaagaagtgt gaaaaatgca tttaaagagt ttatcgattc acgctctcca gattttttta      1140
     gaaagggcat tgatgagcac ttggatcacg ttggcaaaag tgtattgaaa tagatagaga      1200
     ctattttgat tagttatgta agttttaaat ttgaaaaata catgtttcaa ctttatattt      1260
     ataaacggcc atttcatttg caccaacctg a                                     1291
//
ID   Mariner-16_LMi repbase;    DNA;    INV; 1249 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1249
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3256-3256 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1164
FT                 /product="Mariner-16_LMi_1p"
FT                 /translation="MGRSAELTDFERGQVIGCHLCQKSVREISTLLNIPRS
FT                 TVSDVIVKWKREGTRTARKRTGRPRLLTDRDRRQLKRVVQCNRQASIQTIT
FT                 QEFQTASGSTPSTMTVRREVRKLGFHGRAAAHKPHITQVNAKRRLAWCKER
FT                 KHWTIEQWKNVVWSDESRYTMWRSDGRVWVWRMPGERHLPACVVPTVKFGG
FT                 GGVMVWSCFSWRGLAPLVVLRGTITAQAYIDVLSTFLLPTVEEQFGDGDCI
FT                 FQHDRAPVHNARPVAEWLHDNNIPVMDWPAQSPDLNPIEHLWDVLERRLRA
FT                 RPHRPTSIPLLSAALREEWAAIPQETFQHLIERMPARVEAVIKAKGGPTPY
FT                 "
XX
SQ   Sequence 1249 BP; 316 A; 305 C; 332 G; 296 T; 0 other;
     cactatgtga tcaaaagtat ccggacaccc cccaaaaaca tacgtttttc atattaggtg        60
     cattgtgctg ccacctactg ccaggtactc catatcagcg acctcagtag tcattagaca       120
     tcgtgagaga gcagaatggg gcgctccgcg gaactcacgg acttcgaacg tggtcaggtg       180
     attgggtgtc acttgtgtca gaagtctgta cgcgagattt ccacactcct aaacatccct       240
     aggtccactg tttctgatgt gatagtgaag tggaaacgtg aagggacacg tacagcacga       300
     aagcgtacag gccgacctcg tctgttgact gacagagacc gccgacagtt gaagagggtc       360
     gtacagtgta ataggcaggc atctatccag accatcacac aggaattcca aactgcatca       420
     ggatccactc caagtactat gacagttagg cgggaggtga gaaaacttgg atttcatggt       480
     cgagcggctg cccataagcc acacatcacg caggtcaatg ccaaacgacg cctcgcttgg       540
     tgtaaggagc gtaaacattg gacgattgaa cagtggaaaa acgttgtgtg gagtgacgaa       600
     tcacggtaca caatgtggcg atccgatggc agggtgtggg tatggcgaat gcccggtgaa       660
     cgtcatctgc cagcgtgtgt agtgccaaca gtaaaattcg gaggcggtgg tgttatggtg       720
     tggtcgtgtt tttcatggag ggggcttgca ccccttgttg ttttgcgtgg cactatcaca       780
     gcacaggcct acattgatgt tttaagcacc ttcttgcttc ccactgttga agagcaattc       840
     ggggatggcg attgcatctt tcaacacgat cgagcacctg ttcataatgc acggcctgtg       900
     gcggagtggt tacacgacaa taacatccct gtaatggact ggcctgcaca gagtcctgac       960
     ttgaatccta tagaacacct ttgggatgtt ttggaacgcc gacttcgtgc caggcctcac      1020
     cgacctacat cgatacctct cctcagtgca gcactccgtg aagaatgggc tgccattccc      1080
     caagaaacct tccagcacct gattgaacgt atgcctgcga gagtggaagc tgtcatcaag      1140
     gctaagggtg ggccaacacc atattgaatt ccagcattac cgatggaggg cgccacgaac      1200
     ttgtaagtca ttttcagcca ggtgtccgga tacttttgat cacatagtg                  1249
//
ID   Mariner-16_RPr repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1299
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3263-3263 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1219
FT                 /product="Mariner-16_RPr_1p"
FT                 /translation="MSEQEVPSSIAQRVIIKFLAAEGVKPAEILRRLTAQF
FT                 GEETLSRARVFAWHKQFVEGRDRVENESHDRRPRTSITANNISSVRRLIED
FT                 DRRRTTSEIASEVGISYGSTYSIVTEELGYRKVCARWVPRLLTADQKLQRL
FT                 QVCGRLLARFQKQGDQFLTHIITCDETWVHHYTPESKQASMEWRKQGEPGP
FT                 VKAKSRLSAGKVLATIFFDQRGLLHFDFLHERRTINAAYYCDILSEVRLAY
FT                 RRKRRDLSIRQVVLLHDNARPHTAALTREKLEQLGWETLEHPPYSPDLSPC
FT                 DFHVFGPLKEALGGQRFDSDAEVEAYVRNWLQTRPASFYEEGIGKLPIRWE
FT                 KCVSKSGDYVEK"
XX
SQ   Sequence 1299 BP; 356 A; 293 C; 330 G; 320 T; 0 other;
     cgagggtgaa tcaaatataa acgagacttc tcgcccttca ggcacaatag tatagggaga        60
     acgttcccgc tttgtttgtt attgggtagg tttgtcagga gtgggggaag cacgtgggct       120
     cgcctcctcg accctctcag tgtccaccgt aacgatgtcg gagcaagagg taccttcgtc       180
     aattgcgcaa cgtgttataa tcaagtttct cgccgcagaa ggcgtaaaac cggccgaaat       240
     cttgaggaga ttgactgccc agttcgggga agagacactg tcacgagcca gagtgtttgc       300
     atggcataaa cagttcgtgg agggtcgtga tcgtgttgaa aatgagagcc atgaccgcag       360
     acctcgcacc agcattacag cgaacaacat cagcagtgtt cgacggctta ttgaagatga       420
     cagacgtcgt accacttctg aaattgcaag tgaggtcggg ataagttatg gaagcactta       480
     ctccatagtc acagaggaac tagggtaccg taaggtgtgc gccaggtggg ttcctcgcct       540
     tctcacagct gaccagaaat tgcaacgtct tcaggtgtgt gggcgtcttc ttgcacgatt       600
     ccagaaacaa ggagaccaat ttctcactca cattatcacc tgtgatgaaa catgggtgca       660
     ccactacacc ccagaatcta aacaagcgag tatggagtgg agaaaacaag gagaacctgg       720
     accggtgaaa gccaagtcac gtttgtcggc tggcaaggtt ttggctacca ttttttttga       780
     ccagcgtgga ttgctgcact tcgatttttt gcacgagcgc aggacaatta atgcggccta       840
     ctactgcgat attttgagtg aggtccgact tgcatatcgc cgcaaaagac gagacctatc       900
     gatcaggcaa gtggttcttc tccatgacaa tgctcgcccc catacagcag ccttgactag       960
     ggaaaaattg gagcaactgg ggtgggaaac attggaacac cctccttaca gtcctgacct      1020
     gtcaccctgt gactttcatg tgtttggccc tctcaaggaa gctttgggag gccaaagatt      1080
     cgatagtgat gctgaggttg aagcctacgt gcgcaattgg ctgcaaacac gacctgcatc      1140
     tttctacgag gaaggaattg gaaagctgcc tatccgctgg gaaaaatgtg tttccaaatc      1200
     aggagattat gtagaaaaat aaactatatt cttttttgcg tttaaaataa aaataaatta      1260
     cagaaaaaaa aagtctcgtt tatatttgat tcaccctcg                             1299
//
ID   Mariner-16_SIn repbase;    DNA;    INV; 2597 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-16_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2597
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 332-332 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~600bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           721..1827
FT                 /product="Mariner-16_SIn_1p"
FT                 /translation="MIICKHCMLNTIKFCLVRRRFSQCDKRHGIFKMLRRH
FT                 LSAVEVARIIALLQQGFSMRYVAQDIGASVSVVSRAWSRYQDTGNYTRREG
FT                 SGRSRITTNRQDRAIVRYALERRIITARNIRDDIHLRHVCEQTIRNRLREA
FT                 GLRSRVRAQVPRLTLIHRQVRYQFARDHINWTARDWRNVYFSDESRFCLYG
FT                 NDARIRTWRRRNERYDRRCVMPVRSYNGGSVMVWGCISLTRRSDLVILPPP
FT                 AMTGVRYINDILRPHVLPLNRTCRNFIFMQDNARPHTANITRRFFERHAIR
FT                 LLNHPANSPDLNPIKHIWDEMERRLRRREEQPRNLEELGEILTEIWHNIPQ
FT                 DRIARCINMRERLQAVIDQRGGNTHY"
XX
SQ   Sequence 2597 BP; 799 A; 527 C; 539 G; 732 T; 0 other;
     cagctcgacc aacaaatttt tttcgaataa ttcaagtaaa gcttcataaa ctacgatatt        60
     ttgcctgcaa aatgcttttt ttaaaatttc tctacgattt tttttggccg agttacgcga       120
     cttcgaagct aacctgcatt ttttacaaat gatatccgta ctccgtgaaa aatcatcgca       180
     aaaaaatcaa aaaaccattt taaagctcga agtttcagct ttaacatgct attaatggtt       240
     ttcaaaaatt ttctcaattt ctcagtactg tgccccaaga aagatatact gtttttccct       300
     tgaaattacg tatttctaac agcctgtagc tcaataaaaa attctttctc gacaaatcca       360
     atgcaagtgc cataaagtat gacattttct ctacaaaatg ctttttttaa atttttctac       420
     gatttttttt gaccgagtta caagacttca aagaaacaca ttttttacag tacatttttc       480
     cgaaaaatga cgtctaccgc cgacattagc attacccaat gtgcaccacg tggaggttgc       540
     cggtcggatt tttgcacatc gcgtgcgcgc gtgcgtgcgt gcgtgcgtgc gtgcgtgcgt       600
     gcgtgcgtcg cagtatttaa tgactccaaa ccctctaaaa aaaatctctt tttagacaaa       660
     gatgactata tgtaaacata tagtcgtctt actctaaaga aaatcttttt ttagacaaag       720
     atgatcatat gtaaacattg catgctcaat acaataaaat tttgtttagt acgccggcga       780
     ttttcgcagt gtgataagcg acacggaatt ttcaaaatgc tgcgtagaca tttatcggcc       840
     gtagaagttg cacgcataat cgcgcttttg caacaaggtt ttagtatgcg ttatgtggcg       900
     caagatattg gtgcatccgt gtccgtagtg agtagagctt ggtcacgata tcaagacacg       960
     ggaaattaca cgagacgtga aggtagtggt cgatctcgaa taacgacaaa tagacaagat      1020
     cgagccattg ttcgttatgc attagaaaga cgaataatta ccgcaagaaa cattcgcgat      1080
     gacattcatt tgcgccatgt gtgcgaacaa acaattcgca accgtttgag agaggccggt      1140
     cttcgttctc gtgttcgtgc gcaagtacca agactcacac tcatacatcg ccaagtacgt      1200
     tatcaatttg cgcgcgatca cataaattgg accgcaaggg attggagaaa tgtatatttc      1260
     tccgacgaat cacgtttttg cctttatggc aatgatgctc gtatacgtac ttggcgtcga      1320
     cgaaatgaac gctatgatcg acgttgcgtt atgccagtac gatcttacaa cggcggttcc      1380
     gtgatggtgt gggggtgtat atcacttaca agacgaagtg atctagtgat cctgccacct      1440
     ccggcaatga cgggtgttcg ttatatcaac gatattctac gaccacacgt tttgccatta      1500
     aatcgaacct gtcggaactt tattttcatg caggacaacg ctcgacctca tacggcgaat      1560
     ataacgcgac gtttttttga acgacacgca attagactgt taaatcatcc cgccaatagc      1620
     ccggacttaa atccaatcaa gcacatttgg gatgaaatgg aacgacgatt aaggcgtcgc      1680
     gaagaacagc cgcgaaattt agaagaattg ggagaaattt taacggaaat ttggcacaac      1740
     attccgcaag atcgtattgc aagatgtata aatatgcgag aacgcttgca agcagtaatt      1800
     gatcagagag gaggaaatac acactattga acactcatgc gcgcgcgcgc atacacacac      1860
     acagcagaga gggtttggag tcattaaata ccgcagaagt gacgaactgc ggggtcctta      1920
     tctctgctgt gacacacacg cacgcacgca cgcgcgcacg cgcgcacgca cgcacgcacg      1980
     cacgcacgcg cgcacgcacg cacgcacgca cgcacgcacg cacgcgcgcg cgcgatgtgc      2040
     aaaaatccga ccggcaacct ccacgtggtg cacattgggt aatgctaatg tcggcggtag      2100
     acgtcatttt tcggaaaaat gtactgtaaa aaatgtgttt cttcgaagtc ttgtaactcg      2160
     gtcaaaaaaa atcgtagaaa aaatttaaaa aaagcatttt gtagagaaaa tgtcatactt      2220
     tatggcactt gcattggatt tgtcgagaaa aaatttttta ttgagctaca ggctgttaaa      2280
     aatacgtaat ttcaaggaaa aaacagtgta tcttttttgg ggcatagtac taagaaattg      2340
     agaaaatttt tgaaaaccat taatagcatg ttaaagctga aacttcgagc tttaaaatgg      2400
     ttttttgatt ttttgtctac gatgattttt cacggagtac ggatatcatt tgtaaaaaat      2460
     gcaggtttag cttcaaagtt gcgtaactcg gtcaaaaaaa atcgtagaga aattttaaaa      2520
     aaagcatttt gtaggcaaaa tgtcgtagtt tatgaagctt tacttgaatt attaaaaaaa      2580
     atttgttggt cgagctg                                                     2597
//
ID   Mariner-17_AEc repbase;    DNA;    INV; 4388 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   22-OCT-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-4388
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 560-560 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. The sequence is a composite of two
CC   Mariner-type sequences fused together. There are more
CC   Mariner-type families in this species with similar structure.
XX
FH   Key           Location/Qualifiers
FT   CDS           1843..2946
FT                 /product="Mariner-17_AEc_1p"
FT                 /translation="MEDLSRFWKSLASVXLLPLRIFRFKRSRDYRSTYRSF
FT                 RIYTIFAGGRCPLRDPCRESXRVRGLAIRVALRFAAGVAEGASTSSKDRIN
FT                 TEEIIRAVERNPETSIRVIAREHGSSYSTVQRILQEEKWHAFHYTRVQQLR
FT                 PEDYPLRKTFCENFLRRVDRDPRFPSRIIFSDESLFTQEGIFNSHNMHLWS
FT                 DENPRLTRNRNFQIRWKMNIWAGIMGTQILGPVILPDILNSETYLEFLRDN
FT                 LPDFLEEIPLFERSKIVFQQDGAGPHNARIVTDYLNQQFPRRWMGRYGPIR
FT                 WPARSPDLNPLDFFFWGYCKELIYKTLPEDMEDLDTRLRYAVWAIEEDVMQ
FT                 NVQRNLLRRMRACVRMDGGHFEHLL"
XX
SQ   Sequence 4388 BP; 1332 A; 863 C; 875 G; 1315 T; 3 other;
     tatattatcc ttgaaatgtc atattcctga cttaattcta agacgatttt tcctttgcca        60
     aaattttgtc aaaagcgtag tttttaaatt ataataagaa ataattagcg aatgacaggg       120
     cgcgtagaga aggtagccag gagcggcgtt tctcactgtc cgacgcagac cgtacggggg       180
     accctcgtta cgatcagacg accgctacac acgcatgcat atgcgatcgc attctctctc       240
     tctctctcac acacacacac acacacacac acacacacac acacacgcac aaaattaaaa       300
     agtttgatga cttcgacgtg ctgcagcttg agaaacaaga aaaacttcca tcgatcattg       360
     atggatcacg tacagctcca aacttttgtc agttaaactt ccattcctct aacgagttta       420
     gaaatcactc gttcccattg atgcacgcag atcgagtaac cattaaaata ctttgtttct       480
     tataaaacgc atcacttcga tacgtttacg ctcagcgtac agctattcat taacttgaag       540
     aaaacgaagt atttcaatga ttactcaaaa aatttattac tgtatctcta tcagttaagt       600
     gtccgtttta ctaccgatgg tccattttaa ctattatcaa ttaatcattc ggtgaccgaa       660
     aatcactcga agaaagataa tcacacgccg cgtttattcg acgatagcat gcactcgatt       720
     ttaatagaga atctgttagt taattattat aaatcactgc cgattaatta ttcgtcgact       780
     gaatatcact cgaagaaaga agcacacgat tgtttactaa cacacgacgc gttcactcga       840
     cgatagnaag cagtcgatcg attttaatag agaatctgtc agttaattat tattcactgc       900
     cgattaatta ttcgtcgact gaatatcact cgaagaaaaa agcacacgat tgtttactaa       960
     cacacgacgc gttcactcaa cgatagcaag cagtcgatcg attttattgg ttatgtttgt      1020
     actagcgctg tcaaaacacg gacgtctcag tcagaatcga atcgatatcg gttcgatatc      1080
     gttcgacgtc gaaagcatca aatcgacatc gaatcgatca atatcaaaaa atcaatatca      1140
     gaatatttca tgttatgttg tataattgat ttttctgaca ttgatttttc ttccaaacgg      1200
     agtaatgctt cttaagtagt attacatgaa acgtaatgct gtacgatagt gttgcgtccg      1260
     cggtgaataa ttattaaatc ttttacaaaa taagttatta tatatatttc ttgtacgttc      1320
     tctccatctc ttgatctttt ttacataaga gagatattcc atgtaagaaa gtattggtcg      1380
     cccttaaaag ggcggattgc tgtctgtcgc tctaaaaaga acggattgat tgtgatggat      1440
     aaagtaattt tataagaggt gctcgaaatg tccaccgtcc attctaacgc aggctctcat      1500
     acgtctcaat aaatttcttt gcacgttttg catcacatct tcttcgatgg cccatacggc      1560
     ataccgcaat cttgtatcaa aatcttccat gtcttcggga agcgttttat aaattaattc      1620
     cttgcaatat ccccaaaaaa agaaatccag aggattaaga tctggagatc ttgcgggcca      1680
     acgtattggg ccgtatcgac ccatccatcg tctaggaaat tgctgccgcg taccgccttg      1740
     cagcaggata atgctgtccg tggcactcac ccagtaccat cagcatatcg taatattctt      1800
     catttgtgta ggccatatta tcgtcctggt agagaatgac acatggaaga tctttctcgc      1860
     ttctggaaat ctctcgcttc tgtgantctc ttgcctttga gaatctttcg cttcaagcga      1920
     tcgagggatt atcgatcgac gtatcgatcg tttcgtattt atacgatctt tgctggaggt      1980
     cgatgccccc tccgcgaccc ctgccgcgaa tcgnagcgcg tgcgcggtct cgcgatccgc      2040
     gtagcgttgc gattcgcggc aggggtcgcg gagggggcat cgacctccag caaagatcgt      2100
     ataaatacgg aagaaattat tcgagctgtt gagcgaaacc ctgaaacgag tattcgggtt      2160
     attgctcggg aacacggatc atcgtattcg accgttcaga ggatattaca agaagaaaaa      2220
     tggcatgctt ttcattatac acgtgtgcaa cagttacgac cagaagatta tcctctaagg      2280
     aaaacgttct gcgaaaactt tttaagaaga gtagatcgag atccaagatt tccatctcga      2340
     ataatattca gcgatgaatc gctatttacg caagaaggga tatttaattc gcataacatg      2400
     catttatgga gcgatgaaaa tcccagactt acgcgaaaca gaaacttcca aattcgttgg      2460
     aagatgaata tctgggcagg aattatggga acgcagatac taggtccagt tattcttcca      2520
     gatattttga atagcgaaac atatttggaa tttttaaggg ataatctacc agatttttta      2580
     gaagaaatcc cattattcga gagaagcaag atcgtatttc agcaagacgg tgcggggcca      2640
     cacaacgcta gaattgtgac ggattattta aatcagcaat ttcctagacg atggatgggt      2700
     cgatacggcc caatacgttg gcccgcaaga tctccagatc ttaatcctct ggatttcttt      2760
     ttttggggat attgcaagga attaatttat aaaacgcttc ccgaagacat ggaagatctt      2820
     gatacaagat tgcgatatgc cgtatgggcc atcgaagaag acgtgatgca aaacgtgcaa      2880
     agaaatttat tgagacgtat gagagcctgc gttagaatgg atggtggaca tttcgagcac      2940
     ctcttataaa attactttat ccatcacaat caatccgttc tttttagagc gacagacagc      3000
     aatccgccct tttaagggcg accaatactt tcttacatgg aatatctctc ttatgtaaaa      3060
     aagatcaaga gatggagaga acgtacaaga aatattatat aataacttat tttgtaaaag      3120
     atttaataat tattcaccgc ggacgcaaca ctatcgtaca gcattacgtt tcatgtaata      3180
     ctacttaaga agcattactc tgtttggaag aaaaatcaat gtcagaaaaa tcaattatac      3240
     aacataacat gaaatattct gatattgatt ttttgatatt gatcgattcg atgtcgattt      3300
     gatgctttcg acgtcgaacg atatcgaacc gatatcgatt cgattctgac tgagacgtcc      3360
     gtgttttgac agcgctagta caaacataac caataaaatc gatcgactgc ttgctatcgt      3420
     tgagtgaacg cgtcgtgtgt tagtaaacaa tcgtgtgctt ctttcttcga gtgatattca      3480
     gtcgacgaat aattaatcgg cagtgattta taataattaa ctaacagatt ctctattaaa      3540
     atcgatcgac tgcttgctat cgtcgagtga acgcgtcgtg tgttagtaaa caatcgtgtg      3600
     cttctttctt cgagtgatat tcagtcgacg aataattaat cggcagtgat ttatagtaat      3660
     taactaacag attctctatt aaaatcgagt gcatgctatc gtcgaataaa cgcggcgtgt      3720
     gattatcttt cttcgagtga ttttcggtca ccgaatgatt aattgataat aattaaaatg      3780
     gaccatcggt agtaaaacgg acacttaact gatagagata cagtaataaa ttttttgagt      3840
     aatcattgaa atacttcgtt ttcttcaagt taatgaatag ctgtacgctg agcgtaaacg      3900
     tatcgaagtg atgcgtttta taagaaacaa agtattttaa tggttactcg atctgcgtgc      3960
     atcaatggga acgagtgatt tctaaacttg ttagaggaat ggaagtttaa ctgacaaaag      4020
     tttggagctg tacgtgatcc atcaatgatc gatggaagtt tttcttgttt ctcaagctgc      4080
     agcatgtcga agtcatcaaa ctttttcaag gtaattgtgt gtgtgtgtgt gtgtgtgcgt      4140
     gcgtgagaga gagagaatgc gatcgcgtat gcgtgcgtgt gtagcgatcg tctgatcgta      4200
     acgagggtcc cccgtacggt ctgcgtcgga cagtgagaaa cgccgctcct ggctaccttc      4260
     tctacgcgcc ctgtcattcg ctaattattt cttattataa tttaaaaact acgcttttga      4320
     caaaattttg gcaaaggaaa aatcgtctta gaattaagtc aggaatatga catttcaagg      4380
     ataatata                                                               4388
//
ID   Mariner-17_DAn repbase;    DNA;    INV; 1633 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1633
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 273-273 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 29-bp TIRs. TA TSDs. ~91% identical
CC   to Tc1-1_DEl.
XX
SQ   Sequence 1633 BP; 562 A; 261 C; 301 G; 503 T; 6 other;
     cactagtcgg cataattatt ttgacgaaac tttttttgac tcttgaactt agagttgctt        60
     gaaatcgtca aataacggtg cgaatatgag gcgcaaaaca aataatctat ttttagctat       120
     gtgcatgcca aattttattt cgtttacctt ttgcattctc tttccgctga taagaatgca       180
     tgcagacaac ggttttttgc gtggcacaag tattttgaca gcatctttat ggaaatattt       240
     ttacactttt aagtacgsga gaatcaatga acttcagtgt tttaactttg agcaatattt       300
     atggttgtta ttaaaataga aagttattaa aaatttttaa aaatcatggg taaaacggct       360
     gagctaagtt tggttaccag atcttcaatg gtagcaaaat ttaacgttgg aatagcagtc       420
     aaagacattg ccaatgagta taatgtgtcg cgtcaaactg tgcactacca aatcaaaaag       480
     tttaaaaagc ataatgacat gcgtaattta agaagatcag gcgctaagcg taaaacagat       540
     ctcagtgaag accgagtcct cttacgggaa ttaaaaaaaa atgttttact aaagccccaa       600
     tccgcggcag atcaatttaa tttgtcagct aagacaccaa ttagtgagcg cacagtccgt       660
     cgacgattaa aagaatatga ttttaagact tataaagtca aggaagtacc atatataaca       720
     aaagcaaaca agctcaaaag actgtcattt gccaaggaat atgtcaataa gccaaaggag       780
     ttttggagga gcgttctatg gacagatgaa agctcctttg agaataattc aaaaaaaatt       840
     gttgtaagat ttaccaaggg cacaaaggca gaaaatgcgg ccggtttgcc aaaaagtaag       900
     ccatggtgga ggctctgtga tgttctgggg atgtgttgcg tataatggac tgggtgactt       960
     cgtwcctgtc actggctcga tgaaccaagg ccaatattta cgggttctaa atgataatgc      1020
     atttacttct ggagacaggc ttattggaca atcgttcatt ctgcagcagg ataatgcccc      1080
     atgccacaaa gccaagatga ttacammatt tttgaaggat gttggtgtta ccactttgga      1140
     ctggccacct caaagtccag atttaaatat aattgaaaac gtctggtctc ttataaaacg      1200
     taaaagaaca gtatcgttaa ataaaaccag agaggagaca atttctgagg tcacttccct      1260
     ttgggaagag atatctccag agatcatcca aaatttaatt gattcagtac cggaacgsct      1320
     gcaaaaagtt attgaaacta aaggaaatta tatattttac taaattcctt ttttcgttta      1380
     gttttgttta agtttaaact ttgctattcg tattaaaata aacttgtcaa aatacttatg      1440
     ccaccacttg aaaattacwt aagcttatat ttttttaagt taatatgata aaatgttgaa      1500
     ttcattattt ttaagtttgt attagcacta agtaaaacag caaaaaaatt cattaagtta      1560
     tattaaacca ttgcaaagtt acttaaaaac ttgaaccatt tgtatttcgt caaaataatt      1620
     atgccgacta gtg                                                         1633
//
ID   Mariner-17_DF repbase;    DNA;    INV; 1661 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-17_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1661
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 784-784 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. ~530-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1661 BP; 555 A; 294 C; 312 G; 500 T; 0 other;
     cagtggcgag caaaagtgag tgcatgttcg caaaactgac tttcgtcgtc aataaaaacg        60
     gaacggtacg agataattta acaaagtaaa tttttttatg tttactattt tatttataac       120
     aaatgcgaaa aagaatcaat atcatataag gtaaattcta aaagttagaa agaaaaacca       180
     aaaaaacacg cataaactca cttttgcacg tttgaaccaa attatttaaa tatatccatt       240
     ttaatatttg gtccgcaaac ccttattagc cataatttta ttaatgcatt ttggcattcc       300
     ctctaccaaa ttttttataa catcttcagg gatttgatcc aattccgatg ttacacgttc       360
     ccaaaggttg gccatgtttc ttggggctgc ttcttactgc cggagccgtt ttttcaaaat       420
     tgatcaaaga ttttcaatcg gattgaggtc gggacgttgt gctggccact ccattagctg       480
     aaaatgttgt ttgccaaacc attttttgac aattttcggt gtgtttctcg gactgcagct       540
     caaaaaaggc gaaatatgac tcccaaaccg ctagtcaaag gtagaaaaaa aattattgac       600
     agactcagat gctcgactta tgatgtccaa aatgtgaaaa gtcaagctgc tcataccaaa       660
     gggtgcttct atggccatta ataaaaatgt tagccagtgg acggccagga gagcactgca       720
     taacattggt tatgtgtcaa tcgttaaacc tgcattatct gcctagaacg ttaaagcata       780
     attggatatg ctaaagacga caaaaactgg actactgatg attggaaacg tgttatctgg       840
     tctaatgaat ccaagtttaa ccgttttcaa tcagatggaa agaaatactg ctggtgcaag       900
     cccggtgaac gtcttcaaag gcaccatgta aagcaaactg taaaacatgg cggcggaaac       960
     ataatggttt ggggatgctt cacatggtgg catgttggcc ctctgcattt ggtagaaggt      1020
     aaaatgcgaa aagaggacta cctaaaattt taaaaaatca atcttcccaa ttttatggaa      1080
     aaatatgctt atcctgaaga ctaaattgtt tttcaccaag aagggtgatc caaagcaaac      1140
     accgaaaatt gtcaaaaaat ggtttggcaa acaacatttt cagctaatgg agtggccagc      1200
     acaacgtccc gacctcaatc cgattgaaaa tctttgatca attttgaaaa aacggctccg      1260
     gcagtaagaa gcagccccaa caaacatggc caacctttgg gaacgtgtaa catcggaatt      1320
     ggatcaaatc cctgaagatg ttataaaaaa tttggtagag ggaatgccaa aatgcattaa      1380
     taaaattatg gctaataagg gtttgcggac caaatattaa aatggatata tttaaataat      1440
     ttggttcaaa cgtgcaaaag tgagtttatg cgtgtttttt tggttttttc tttctaactt      1500
     ttagaattta ccttatatga tattgattct ttttcgcatt tgttataaat aaaatagtaa      1560
     acataaaaaa atttactttg ttaaattatc tcgtaccgtt ccgtttttat tgacgacgaa      1620
     agtcagtttt gcgaacatgc actcactttt gctcgccact g                          1661
//
ID   Mariner-17_DK repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-17_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1642
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1210-1210 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 27-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..1321
FT                 /product="Mariner-17_DK_1p"
FT                 /note="transposase."
FT                 /translation="MNYSKRRTPKEIKNIKKTPLNDARKEARLRFAREHMT
FT                 WKKEWKXVVFSDEKKAILDGSDGYNYYFHDIRKEEXFLSRHDTCAGGVMVW
FT                 GALSFYRTCYLQFVTSKMNANLYITVLQTAFPQFLETYGHIPWTYQHDNAP
FT                 IHTARVVKQWIKDQNVKLLEWTPYSPDINIMENIWGLLSWRVYEGGRQFSD
FT                 SGALVDAIKKAWSTILLNEIEKYYDSLPSRMFEIIKNKGGQTKY"
XX
SQ   Sequence 1642 BP; 559 A; 286 C; 300 G; 492 T; 5 other;
     cagtgccgct caactgaata ggtttgaaaa atcgttctca catttttcac tctcccttta        60
     ttccaactga atggtttgct attatttctt tttattttga acctttattt gtttacgcac       120
     tgtatgcaag aaaaaattaa cgggacaaat gcaacgaata ttcagaattt tacttttaac       180
     gtaaaattcg ccaaatgcgt gctctattct tggctcatct gaataggttt aactctttag       240
     actttgcttt tggtttgact gcgtgacaga aaagaagtaa atttttttgt aktgcaaaat       300
     ttaaagcatt ttwtatcagt tttttgtaaa atgggccgcg gaaaaccttt aaccgatttt       360
     gaaaagggtc gcataaaagg ttatattgaa tctggcttaa aacaccatga aataccctaa       420
     aaaataggtc gaagttaaaa cgttgtgagt aattttcttc gtaatgaagc agactatgga       480
     aaaaaattaa aggagaaaaa aaatatgcaa ccacagcata taagaggcga cttatccttc       540
     gaactgcccg aaattcccac ctttctgctg gtaaaataag ggaaaaatgc gctgtaaatg       600
     ctagtgtggt tacggtaaaa tgaattattc gaagcgccga acacctaaag agattaaaaa       660
     tataaaaaaa acacctctca atgatgctcg taaggaagca cgccttcgat ttgctcggga       720
     acacatgacg tggaagaagg agtggaagam tgtggtcttc tccgacgaaa agaaggctat       780
     cctcgatgga tcagacggct ataactacta ttttcacgat attagaaaag aagaatkktt       840
     tttaagtcgt catgacactt gtgccggtgg agtaatggta tggggagccc tatcttttta       900
     tagaacatgc tatctccagt ttgtcacctc gaagatgaac gcaaatcttt acataactgt       960
     gctccaaacg gcttttcccc agtttttaga gacgtatggt catattccat ggacgtatca      1020
     acacgacaac gctcccatcc ataccgctcg ggttgtaaag cagtggatta aggaccaaaa      1080
     tgtcaaattg ctcgagtgga caccttactc tcctgacatt aacatcatgg agaacatttg      1140
     gggacttttg tcttggagag tatacgaagg aggaagacaa tttagtgact ctggagccct      1200
     agttgatgca attaaaaaag catggtcaac aattttacta aatgaaatcg aaaaatacta      1260
     cgattcttta ccaagccgta tgtttgaaat aattaagaac aagggtgggc agactaaata      1320
     ttaaatattg ctaaaacagt gtcttttatt acttcaatta cctagtgcct tcaaattttg      1380
     tttaatacat gtaaatttaa taaatttagt agttaaacct attcagttga gccaaaaaaa      1440
     tgcagccatt ttgttatgtt tttgaaaaaa taataaaaat aatataacaa caaacccgac      1500
     aagacacaat ttttattatt tcacaaaaga cagttttctt tatacaaaaa aatttatttc      1560
     gatcaaatcg gagggcttgt tgcagagata caccgtttca aacttaaaag aaaagtcaaa      1620
     cctattcagt tgagcggcac tg                                               1642
//
ID   Mariner-17_DRh repbase;    DNA;    INV; 1665 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1665
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1411-1411 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. ~830-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1665 BP; 534 A; 297 C; 307 G; 527 T; 0 other;
     cagtggctca cagcttattt caaccagtgc tcaagtaaaa ctttaagtcg ctgtatttgc        60
     caaattaaga gagatattgg aacactttaa acgcagattt atagctctgt attttaactt       120
     ttatttcatg aattcctaaa tttttaaata tttttgtaat atttattttg attttaagac       180
     tcaaataaca ggtaaaatga atgccacagc ttatttcaac cagcccttaa aagtatatat       240
     tttttaaaga ttaagaacta aaaatgataa aataatattt tgtatgacca gccttcgtgt       300
     aaacaatcat tttaagtctt tttgcgattg attcgaccaa tttttaagtc acttggggac       360
     tcattttggc cccttcttcg agtaatgcgt tttttaggtc cgtttgacgc tttcgaattt       420
     ttctgtccaa tatagcccat caattatcaa taatattatt atctggagac caggctgatg       480
     gtttcatgat atgcgggcaa ttttaaatga gccatatcgg cagagttccc gatgtgtgct       540
     tgggatgatt gtcctgataa aatcggaatt tatcacgaat tcccagattt tctccacttt       600
     gcaccaaaat ggacttcaat atgcttaaat taagagtttt tttcattgtt gtgtccacca       660
     aatccaaaat cccggctcaa gctgccgaca tacaggccca aaccatgacg atcccaccac       720
     catgcttgcg gttcaaatgc acatagtatc aaaagtgaag ctttaagtcg gctttggcca       780
     gcatttgaat aaggattcca gcttctggaa cactgtaata ctttccgacg agtcggaaag       840
     tattacagtg ttcctggatc tggatggggc ttcttcaaat gcttggcgaa agccagagat       900
     agagctgcac acaagatatc taagggcaat ggaacctcaa gcctggtggt gggatcgtca       960
     tggtttgggc ctgtatgtcg gcagcttgag ccgggatttt ggatttggtg gacacaacaa      1020
     tgaaaaaaac tcttaattta agcatattga agtccatttt ggtgcaaagt ggagaaaatc      1080
     tgggaattcg tgataaattc cgattttatc aggacaatca tcccaagcac acatcgggaa      1140
     ctctgccgat atggctcatt taaaattgcc cgcatatcat gaaaccatca gcctggtctc      1200
     cagataataa tattattgat aattgatggg ctatattgga cagaaaaatt cgaaagcgtc      1260
     aaacggacct aaaaaacgca ttactcgaag aaggggccaa aatgagtccc caagtgactt      1320
     aaaaattggt cgaatcaatc gcaaaaagac ttaaaatgat tgtttacacg aaggctggtc      1380
     atacaaaata ttattttatc atttttagtt cttaatcttt aaaaaatata tacttttaag      1440
     ggctggttga aataagctgt ggcattcatt ttacctgtta tttgagtctt aaaatcaaaa      1500
     taaatattac aaaaatattt aaaaatttag gaattcatga aataaaagtt aaaatacaga      1560
     gctataaatc tgcgtttaaa gtgttccaat atctctctta atttggcaaa tacagcgact      1620
     taaagtttta cttgagcact ggttgaaata agctgtgagc cactg                      1665
//
ID   Mariner-17_HSal repbase;    DNA;    INV; 2053 BP.
XX
AC   .
XX
DT   12-JAN-2012 (Rel. 19.04, Created)
DT   12-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2053
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 858-858 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           584..1651
FT                 /product="Mariner-17_HSal_1p"
FT                 /translation="MVRYTNEEYRDMVLIYGECQQNAREAARIYRQRYPNR
FT                 LHYPSPMVFIRLYHRLGEHGTFAVHRNMNRSRPVCNQDTTINVLAAIIVNP
FT                 HYSTRQLSRELGISHVNIWNILHRERQHPFHINLHQALTQEDHGRRMEFCR
FT                 WALQRYEEDETFFSRVLWSDEATFRSNGHVNRHNFHYWSDQNPRWLRQIDN
FT                 QHVWSLNVWCAIIGVTIIGPFFFDGIVSGRVFLNFLVEKLPILLEDLPLNL
FT                 RQNMWMQLDGAPPHFSLAVRQHMNVIFPNRWIGRGGPVSWPPRSPDLTCLD
FT                 YYFWGRIREIVYVNPPTTRENMMQRICEASQIISTSELQRVLNDFQRRLQA
FT                 CIDARGQHFEHLN"
XX
SQ   Sequence 2053 BP; 634 A; 347 C; 388 G; 684 T; 0 other;
     cagggtgcta aatttcaaac gtaacaggta aaaaatctcg aaaactaaat gatattgagg        60
     tccgcctttt ttttatattg tattgtttcg aaggggacac attttgatta aaacaaaatt       120
     taattttggg tggaggcgcc aaggtaaaaa gaaggtcaaa ctttttttta aatggaactc       180
     taattttttg aacacctacg tttgtagccc ttgtcatgac gaattcaaca accacatact       240
     caaggtgatt agaggtcaaa taatggaaaa aagactcatt aactttatta atacatctta       300
     ataaaatcaa agtttatctt gtttatattg gcaaaattct atcatgatct tcctgcgtta       360
     aagcttagta gaagtggata tggaatggat gttggcgttg acgatgcaaa aactgtaaac       420
     attcttcaga aaataaacac ataacagata gactaggcgt acgtacgtgt ggggatgggt       480
     actatttcaa ccaagtcagt tattgatatt gaacacgagt gtgactagtg taatcattag       540
     aataagttgt gttttcactt tcttttcttt cgtcatttgc gttatggtgc gttatactaa       600
     tgaggaatat cgtgacatgg tcttaattta tggtgaatgt caacaaaatg ctagagaagc       660
     tgctagaatt taccgtcaaa gatatcctaa tagactccat tatccatctc ctatggtctt       720
     cattcgttta tatcatcgtt tgggagaaca tggaactttt gcagttcatc gcaatatgaa       780
     tcggtctcgt ccagtttgta atcaggacac aacaataaat gttttagcag caattattgt       840
     aaatcctcat tacagtacac gacaattgtc acgggaactt ggaatatccc acgtaaatat       900
     ttggaatatc ttgcatcgtg agcgccaaca tccgttccat atcaacttac accaagcctt       960
     aacgcaggag gatcatggta ggagaatgga attttgtcga tgggctttac aacgctatga      1020
     agaggatgaa acgttctttt ctagagtatt atggagcgat gaagctacgt ttcgtagcaa      1080
     tggacatgta aatcgtcata attttcatta ttggagcgac caaaatccta gatggttaag      1140
     acaaattgat aatcaacatg tatggtcgtt gaatgtgtgg tgtgccatta ttggtgtcac      1200
     aattatcggt ccatttttct tcgatggtat cgtaagtgga cgagtttttt tgaatttctt      1260
     agttgagaaa ttacctattc ttctggaaga tttgcctcta aaccttcggc aaaacatgtg      1320
     gatgcaactt gacggagcac ctcctcactt tagtttggct gtcagacaac acatgaatgt      1380
     tatttttcct aatcgatgga taggtcgagg aggtccagtg tcttggccac ccagatcacc      1440
     tgatttgacc tgcctagatt attatttttg gggtagaatc cgggaaattg tttatgttaa      1500
     tcctccaact acaagagaaa atatgatgca acgaatatgc gaagcgagtc aaataatttc      1560
     gacgagcgaa ttacaaagag tgcttaatga ttttcaacga agattgcagg cttgcataga      1620
     tgcaagggga caacatttcg aacacttaaa ttaatgaaat tctccatttc gaagagaaaa      1680
     acgcttcttt tttctaagat attttgttct tattgaaaat ttattaataa agtttatttc      1740
     ttctttgctt tattcaagca ttattttttc tttcctgagt cttttttcca ttatttgacc      1800
     tctaatcacc ttgagtatgt ggttgttgaa ttcgtcatga caagggctac aaacgtaggt      1860
     gttcaaaaaa ttagagttcc atttaaaaaa aagtttgacc ttctttttac cttggcgcct      1920
     ccacccaaaa ttaaattttg ttttaatcaa aatgtgtccc cttcgaaaca atacaatata      1980
     aaaaaaaggc ggacctcaat atcatttagt tttcgagatt ttttacctgt tacgtttgaa      2040
     atttagcacc ctg                                                         2053
//
ID   Mariner-17_LMi repbase;    DNA;    INV; 1499 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1499
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3257-3257 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           252..1280
FT                 /product="Mariner-17_LMi_1p"
FT                 /translation="MQQQRDLPEAMAWRAIGRLEAGQTQREVAAAIGVSQS
FT                 VISRTWTRFQTTGTVKRRQGQGRPRVTSARDDRYLRLTARRDRRLNATQLQ
FT                 RTLQAATGRAISTQTVRNRLRECGLYARRPMVCVPLKPRHRLARRNWAEEH
FT                 QDWSRNEWRRVLFTDESRFCVQPDNRRSLIWRERGTRNNPAYVQETSPYHG
FT                 GGRMVWAGVSIGGRTDLYVVQNGALTAQRYRDEILRPFVVPYAGAIGDGFL
FT                 LVDDNARPHRAALVDNMLEAEGIERMEWPACSPDLNPIEHVWDALGRRIAA
FT                 RPAPPTTVAELDIALMEEWPNIPQELIDNLILSMPRRCATVLAVRGDHTPY
FT                 "
XX
SQ   Sequence 1499 BP; 420 A; 338 C; 397 G; 344 T; 0 other;
     cactggtcaa aacaattagg ggatcagttg agatatctag gttctgaagt attgtcatcg        60
     gcagaatgaa ctaaaatggt tcgacgtctt tctgtcggtt ctacggagtg gagacaacaa       120
     cattacggca accgagatag tggtaataac agaaagttgc tgcagagggg gttggtgttg       180
     acttgtgttt actctaccaa acgaattaca caagcagttg ggttcagata gtgtagtgag       240
     caggtagtgc aatgcaacaa caacgtgact tacccgaagc tatggcatgg agagccatag       300
     gaaggttgga agcgggacag acacagaggg aggtggctgc agctattgga gtgtcccaaa       360
     gtgtaatttc caggacctgg acgcgatttc agacaacagg aaccgttaaa agaaggcaag       420
     gccaaggtcg tccacgggta acatcagcaa gagatgaccg ttatctccgg ttaacagccc       480
     gtcgagacag gaggctgaat gcaactcagc tgcaacgcac cctccaggca gcaacaggac       540
     gcgcaatatc aacacaaaca gtccgaaatc gccttcggga atgtggcctc tacgcacgga       600
     ggcctatggt gtgtgtccca ttaaaaccac gacaccgttt agcccgcaga aactgggcgg       660
     aggaacatca ggattggagt cgtaacgaat ggcgccgggt tctgttcaca gatgagtcaa       720
     gattttgtgt tcagccggac aatcgtcgtt ccctcatctg gagagaacgt ggaactcgga       780
     acaatcctgc ttatgtgcag gaaacatcac catatcatgg tggtggacga atggtgtggg       840
     caggagtcag tattggcgga cgtacggacc tctatgtcgt tcagaatggc gctttgactg       900
     ctcagaggta tagagacgag atccttcgac cttttgttgt gccctacgct ggtgccatag       960
     gagatgggtt ccttctggtg gacgataacg ctcgtcccca cagagctgca ctggtggaca      1020
     acatgcttga agctgaggga attgaacgaa tggagtggcc agcttgttca ccggacttaa      1080
     acccgattga gcatgtctgg gatgcacttg gcagacgcat tgcagccaga ccagcacctc      1140
     ccacaacggt tgcagagctg gatattgcac tcatggaaga atggccaaat atccctcaag      1200
     agctgattga taacctcata ctgtccatgc cacgcaggtg tgcaactgta ctggccgtcc      1260
     gaggtgatca cacaccatat tagagggcaa cgagaatgac tttttcacta ttatggtagc      1320
     cccatggtgc ctcgctctaa gtaaacgcca tgtaaacctc aagtaaagag ttgagacagc      1380
     aaaatatcgt actgtatcac acacaaatta caattgtaac caatatctga ataaaatacg      1440
     ttaccatatg tatattgtgt atgatatctc acctgatccc ctaattgttt tgagcagtg       1499
//
ID   Mariner-17_RPr repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3264-3264 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           358..1098
FT                 /product="Mariner-17_RPr_1p"
FT                 /translation="TLWSPKIGCCFRKYKKVHKIILKDRKVKLREIADTLK
FT                 ISEGSVFTILHENLSMRKLLSKWVPRLLTLDQKQQRVDDSERCLELFKRDK
FT                 KDFLRRYVTMDETWIHYYTPESKRSSAEWTAAGESRPKRPKTQKSAGKVMA
FT                 SVFWDAHGILFIDYLEKGETINSEYYMALLDRLNAEIKKKRRHMQKKKVLF
FT                 HQDNAPCHKSMKTMVKLNELHFELLPHPPYSSRSGPQRLLAFCRHQKDAPG
FT                 KEILLK"
XX
SQ   Sequence 1293 BP; 431 A; 229 C; 285 G; 348 T; 0 other;
     ttacatcact caataagtct ccggtctgac atatatagat ggcaacactg ttgacagacc        60
     gttatgattt ctcgatagta gcatctttca aacgatacat gtcaaaattt catgagattc       120
     tgataattag tttacaggtt acagtgagtt ttagtgaccc cagtttttta atttttaaaa       180
     aatggataaa aaagaatttc gtgtgttgat taaacattgt tttttgatgg ggaaaaatac       240
     tgttgaagcc aaacagtggc ttgataagcg ttatggagac tctgcgccag ggaaatcaac       300
     tattattgac tggtatgctg aattgaaacg cggtcgtaca aacaccgaag atgctgaacg       360
     ctctggtcgc ccaaaatcgg ctgttgtttc agaaaatata aaaaagtcca caaaataatt       420
     ttgaaagacc gtaaagtgaa gttgcgtgag atagctgaca ccttaaagat atcagaaggt       480
     agtgtgttta caattttaca cgaaaatctg agcatgcgga agttgctttc gaagtgggtg       540
     ccgcgtttgc tcacactgga ccaaaaacaa caacgtgtcg atgattcaga gcgctgtttg       600
     gagctgttca agcgagataa aaaggatttc ttgcgtcgat atgtgacaat ggatgaaacg       660
     tggatccact actacacacc tgaatctaaa agatcgtcag cagaatggac agcagccggt       720
     gaaagtcgtc caaagcgacc aaaaactcaa aagtcagctg gcaaggttat ggcatccgta       780
     ttttgggacg cgcatggtat tttgttcatc gactatcttg agaaaggtga aactatcaat       840
     agcgaatatt acatggcatt gttggatcga ttaaatgcag aaatcaagaa aaaacggcgt       900
     cacatgcaaa agaaaaaagt gctgtttcac caagacaatg ctccgtgtca caagtcgatg       960
     aaaacgatgg ttaaattgaa tgaattacat ttcgaattgc ttccccaccc accgtactcc      1020
     tccagatctg gcccccagcg actactggct ttttgcagac atcaaaaaga tgctccaggg      1080
     aaagaaattt tgctcaaatg aagaagtgat tgccgaaact gaggcctatt tagggagtaa      1140
     agacaaatcg ttctataaga aaggcatcga aaagttagag gagcgttgga atgcatgtac      1200
     cactcttgaa ggagatatgt tgatgaataa agtcgaattt ctaaaaaaaa attgtttttc      1260
     ttagctagac cggaaactta ttgagtgatg taa                                   1293
//
ID   Mariner-17_SIn repbase;    DNA;    INV; 1606 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-17_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1606
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 333-333 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 27bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           273..1316
FT                 /product="Mariner-17_SIn_1p"
FT                 /translation="MFCLCSGAMPKQKEYSDDIKSAVIAALKNEKSQAQVA
FT                 RDFNLSRQIISVWNRKEQSTGSVSNKQRSGRPPKLTDHVSRIIRRMSVANP
FT                 RLTAADIKRDLNENHSLDISLTTVKQCLRNANLFGRRPSKKPFISARNRKA
FT                 RLEFAQKYKNWTSQEWARVLWSDESKFNMFSSDGIRYIRRPPNKRDDPKYQ
FT                 VPTVKHGGGHVMVWGCFSRSGVGPLVEVKDIMDRFRYCEILQNHMLPYAKR
FT                 NLARNWIFQQDNDPKHTSAHVKEFFTSKKIKVLEWPSQSPDLNPIEHLWEE
FT                 LDRRIRKRKFSRKQDLMACLAEEWKEIPLTVITKLIDSMPARCAAVIKSKG
FT                 FATKY"
XX
SQ   Sequence 1606 BP; 484 A; 306 C; 351 G; 465 T; 0 other;
     cagtagcggc ggaaagtatt ttgacaacgc gttttttgca gataaagcgc acgccgggcg        60
     cgctgttgat tagaagttgt tgttagtgaa cacttttctg cagtctgcag cggtgacaac       120
     atcagtcttg attgagtgga tgtttcgttt cggaagtgct gctgttatct ttaatctgta       180
     agtcgaaaag tattttgaca cagaaggttt tgtctaaaag agacacgcag gggctcacgt       240
     aagttacttt atttacggtt tttgtttact ttatgttttg tttatgttca ggagctatgc       300
     caaaacaaaa ggaatactcc gacgacataa agtcggctgt tattgcagca ttgaaaaatg       360
     aaaaatctca agctcaagta gcgagggatt ttaatctgag cagacaaata atctcggttt       420
     ggaaccgtaa agaacagtcc acaggctcgg ttagcaacaa acaaaggtcg ggccgaccgc       480
     caaaactcac tgaccacgta tctaggatta tccgccgcat gagtgtcgct aatccacgtc       540
     tgacagcagc tgacattaag agagatctaa atgagaatca cagtcttgac attagtttaa       600
     ccactgtaaa acaatgcctc cgcaacgcga atttgtttgg cagacgccct tccaaaaagc       660
     cattcatatc cgcgaggaac agaaaggcgc gtctcgaatt tgctcaaaag tacaaaaact       720
     ggactagtca ggagtgggct cgcgtgctgt ggagcgacga aagcaagttt aatatgttct       780
     catctgatgg aataaggtat attagacgac ctccgaacaa aagagatgac cccaagtatc       840
     aggtaccgac cgttaagcac ggtggtggcc atgtcatggt ttggggctgc ttctctcgtt       900
     caggagtcgg tccgttagtc gaagtgaagg acatcatgga ccgatttcgt tattgcgaaa       960
     tactgcagaa tcacatgctc ccttatgcta agcgcaacct tgccagaaac tggattttcc      1020
     agcaggataa cgatccaaaa cacacctctg cacatgtaaa agagttcttt acgtctaaga      1080
     agattaaagt tctagagtgg ccaagtcaga gtcccgacct aaacccgata gaacatctat      1140
     gggaagagtt agatagacgg attagaaaaa gaaaattctc cagaaaacaa gatctgatgg      1200
     cctgtcttgc agaagaatgg aaggaaatac cattaactgt gatcaccaaa cttattgact      1260
     ctatgccggc aagatgtgcg gctgtgatca aatctaaggg ctttgccact aaatattaaa      1320
     gcttctgatg taatcaaatt aattttcggt ggttaattac aggttttgtt tggaagttgc      1380
     aacagataat ggttttgtca aaatactttc tttctacatt tgtttaaaaa atgtaaaaaa      1440
     taacgcagtt ttcgttttta aatgtgatat ttgttttttc tttcttttct actgagaggc      1500
     attgttgctt ttggacaaat attataactt tgttataact ttgtttcaga aataaatatt      1560
     tattttctat aaattgtgct tgtcaaaata ctttccgccg ctactg                     1606
//
ID   Mariner-18N1_LMi repbase;    DNA;    INV; 535 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-18N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-535
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3258-3258 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 535 BP; 151 A; 99 C; 136 G; 149 T; 0 other;
     cgagggtcac tccaaaagaa atgcacacta ttttttaata cagttttcat tctgcatgtt        60
     tgaaagtttt acagtgtgta gatacatcct tcccgcttgt tttcaaactt agttcaacct       120
     gttcccgtga gtggcgccgt cacagcatgt cttcaagatg gctgctacac ttgacgttcg       180
     tcagaagcaa cgtgctgtca ttgaattcct gtgctgtgaa aacgagacag tgggaaacat       240
     ccacaagagg ttgaaaaagg tgtatggaga tgctgctgtc gatcgcagta cagttagtcg       300
     gtgggcaagc aggttacgtg atgaaagcgg gcacggcaat attgaggatt gtcctcgcag       360
     cggctacagg cgctggttcc aagatggcgt aaggcagttg agagggatgg ggattatgtg       420
     gagaaatgaa aatattgttc ctaaaggatg tatctacaca ctgtaaaact ttcaaacatg       480
     tagaataaaa actgtattta aaaaatagtg tgcatttctt ttggagtgac cctcg            535
//
ID   Mariner-18_AEc repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 561-561 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1211
FT                 /product="Mariner-18_AEc_1p"
FT                 /translation="MSVYEPNSRHLREVLIFCFNMKKSAAEAHRMLSNTYG
FT                 EAAISERTCREWFQRFKNGDFDVEDRHSGGREKVFEDAELEALLDQDSCQN
FT                 QEELARSLGVTQQAISKRLKVMGMIQKQGNWVPYELKPRDVERRLFACEQL
FT                 LERQRRKGFLHRIVTGDEKWVHYDNPKRRKSWGVPGHASTSTAKPNIHGSK
FT                 VMLCIWWDQLGVVYYELLKPTETITGDQYRTQLMRLSRALKDKRPQYNERH
FT                 DKVILQHDNARPHVAKVVKTYLETLKWEVLPHPPYSPDVAPSDYHLFRSMA
FT                 HGLADQHFRSYEEVKNWIDSWIASKDDQFFRRGIRTLPERWEKVVASDGQY
FT                 FES"
XX
SQ   Sequence 1288 BP; 382 A; 263 C; 320 G; 323 T; 0 other;
     ttaggtgtac aactttgctt ccgccgtttt cctatagatg gctttagcgg taagtggtgg        60
     tcgaaataaa tagatcatag acgtcataca ataaacttgg gcatctgtca acataacccc       120
     atagaaacat tagtcgattt gtgtctgcat cataaagtta ttctcgattg aaaatgtcag       180
     tttacgagcc aaattctcgt catttgcggg aggttttaat tttctgcttc aatatgaaga       240
     aatctgcggc tgaggctcat cgaatgctct caaatactta tggtgaggcc gctattagtg       300
     aaagaacgtg tcgtgagtgg tttcaacgct tcaagaacgg tgattttgac gtcgaagacc       360
     ggcatagcgg tggaagagag aaggttttcg aagatgcaga attggaggca ttacttgatc       420
     aagactcgtg tcaaaatcaa gaagaattgg cacgatcatt gggagtgact caacaagcca       480
     tttcaaaacg cctcaaagtc atgggaatga ttcagaagca aggaaattgg gtgccgtacg       540
     agttgaagcc gagagatgtt gaacggcgtt tgtttgcttg tgaacagctg cttgaaaggc       600
     aaagacggaa gggatttctg catcgcattg tgactgggga cgaaaaatgg gttcattacg       660
     ataaccccaa gcgcagaaaa tcatggggag ttcccggcca tgcttccacg tcgacggcca       720
     aaccgaatat tcacggctcc aaggtcatgc tctgtatttg gtgggaccag ctcggcgtag       780
     tgtattatga gctgttaaaa ccgactgaaa caatcacagg cgatcagtat cgaacgcaat       840
     tgatgcgttt gagccgagca ttgaaagaca aacggccgca atacaacgag agacacgata       900
     aagtgatttt gcagcatgac aatgctcgac cccatgttgc gaaagtggtc aagacatact       960
     tggaaacgtt gaaatgggaa gtcctacccc acccgccgta ttctccagac gttgctccct      1020
     ctgactatca cttgtttcga tcaatggcac acggcctggc tgaccagcac ttccggtctt      1080
     atgaagaagt aaaaaattgg atcgattcgt ggatcgcctc aaaagatgac cagttttttc      1140
     gacgcgggat tcgtacgctg cccgaaagat gggagaaagt agtggccagc gatggacaat      1200
     actttgaatc ataaatgtat aaccagtttt ttacaataaa gcctcgaatt tcggaaaaaa      1260
     aacggcggaa gcaaagttgt acacctaa                                         1288
//
ID   Mariner-18_DAn repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-930
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 274-274 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 27-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..656
FT                 /product="Mariner-18_DAn_1p"
FT                 /translation="MYYRVFLLSRLAFAKTFVHKPQSFWEQILWTDESTFE
FT                 YHGSKNKIFCRLPKNTRSKLRPVCQRIPHGGGSVMFWGCVCFNGIGDLIPI
FT                 EGTMNKGQYLHVLNDHFILQQDNAPCHKAAMIMNFLRDLDVNLLDWPPQSP
FT                 DLNIIENVWAYIKRKRCSNLTRTREETIAEVEELWKDISLETLQNLVKSLP
FT                 GRLQKVIDVKGGYIFH"
XX
SQ   Sequence 930 BP; 309 A; 147 C; 153 G; 321 T; 0 other;
     ctatggtggc caaaaatatt ttgacatagc atgaaccaat gtactatcgc gtatttctac        60
     tatcgcgttt agcatttgct aaaacatttg ttcacaaacc tcaatctttt tgggaacaaa       120
     ttttgtggac tgatgaaagt acatttgagt accatgggtc gaaaaataaa atattttgta       180
     gattacccaa aaacacacgt tcaaaactaa gacctgtatg ccaacgcatt ccacatggtg       240
     gagggtctgt tatgttttgg ggatgtgtgt gttttaacgg gatcggcgat ttgataccca       300
     ttgaaggcac aatgaataaa ggacagtatt tacatgtcct aaatgatcac tttatcctgc       360
     aacaggataa tgctccttgt cacaaagccg caatgattat gaatttctta agggatttgg       420
     acgtcaattt attagattgg ccaccccaga gtcccgattt gaacataatc gaaaatgtgt       480
     gggcttatat aaagcgtaaa agatgttcca atctaacaag aacgcgcgaa gagacaattg       540
     ctgaggttga agaactttgg aaggatattt ctctagaaac acttcaaaat ttagtaaaat       600
     cgcttcctgg acgtttacaa aaggtaatag acgtcaaagg gggctatatt tttcattaac       660
     aatactttaa attttgataa cttttttaaa tttattagat ttactaagat acataatatt       720
     gtcaaaatac ttttgtccac tcacaatttt gaatttttat ttttattttg taaaccttaa       780
     tatgaaatga atttttttcc cctatattat gatctactct actgttgtat ataaatatat       840
     ttttttcatt gacttttgat aaataaaaaa catttaatca cagaaaaatg tgtaactttt       900
     ttaatgtcaa aatatttttg tccaccattg                                        930
//
ID   Mariner-18_DF repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-18_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1648
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 785-785 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. ~800-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1648 BP; 508 A; 308 C; 315 G; 517 T; 0 other;
     cagtggctcg cagcttattt cgtgcagtta cctaaaaaaa gttcaaatcg ttattcctgc        60
     taaactaaaa aagataactg aaaaatttaa acgcagtatt ttaatatgga atattaactt       120
     atttattgaa cgaaagcgat tttcttaatc ataaaaacaa aaaaattatt taataaaaac       180
     aaaatgtaca gggtttttcg atgccgcagc ttatttcgtg cagcagattc tacttaactt       240
     attattagta atttaacaga tacggttttg tatgtccatt tttctggttc aggacatctt       300
     tgagatgatt tcccatggag caaaataact ttttagtggt ttccagtgga attttttgcc       360
     attcttccat aagaacagtt ttcaggtcgt ttttgttcga aatcttcctc ttccttatag       420
     cgatgtccaa tatttcccaa aaattttcga tctcatttaa atctggagac tgtgctggcg       480
     ttataacgac atgtgggcag ttccaggtaa cccaagactt cacaattcct gctgaatgct       540
     tcggatcgtt gtcctggtaa aatcgaaaac gatcgcgtat gcccagtttt ttagcagttt       600
     gcagtaggtt atcctctaaa atgttgaggt acattgtggc gtccttgatg ccatccatga       660
     aaatgacttt gcccatgcca gaggctgcct tacaggccca aaccatggcc tgaccagcgc       720
     catgtttgac cgtagatttc aggtgcttat tttcaaactc tgtatttggt cacaggagca       780
     catactttca ccgattttgt ccgggatgac tttatttttg ctgacgagtc aaaatgtaac       840
     atttttggtt cagatggacg acaatttgtg tggcggcgac caaatacaga gtttgaaaat       900
     aagcacctga aatctacggt caaacatggc gctggtcagg ccatggtttg ggcctgtaag       960
     gcagcctctg gcatgggcaa agtcattttc atggatggca tcaaggacgc cacaatgtac      1020
     ctcaacattt tagaggataa cctactgcaa actgctaaaa aactgggcat acgcgatcgt      1080
     tttcgatttt accaggacaa cgatccgaag cattcagcag gaattgtgaa gtcttgggtt      1140
     acctggaact gcccacatgt cgttataacg ccagcacagt ctccagattt aaatgagatc      1200
     gaaaattttt gggaaatatt ggacatcgct ataaggaaga ggaagatttc gaacaaaaac      1260
     gacctgaaaa ctgttcttat ggaagaatgg caaaaaattc cactggaaac cactaaaaag      1320
     ttattttgct ccatgggaaa tcatctcaaa gatgtcctga accagaaaaa tggacataca      1380
     aaaccgtatc tgttaaatta ctaataataa gttaagtaga atctgctgca cgaaataagc      1440
     tgcggcatcg aaaaaccctg tacattttgt ttttattaaa taattttttt gtttttatga      1500
     ttaagaaaat cgctttcgtt caataaataa gttaatattc catattaaaa tactgcgttt      1560
     aaatttttca gttatctttt ttagtttagc aggaataacg atttgaactt tttttaggta      1620
     actgcacgaa ataagctgcg agccactg                                         1648
//
ID   Mariner-18_DK repbase;    DNA;    INV; 1622 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-18_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1622
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1211-1211 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~230-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           645..1370
FT                 /product="Mariner-18_DK_1p"
FT                 /note="transposase."
FT                 /translation="MKPALTKRHISLRHKFAVTHENLTIADWDTVSPRNFR
FT                 LKNENYSKIFGFSRLYSRTKQKLIDLSQMIAPGVGLETPPSNVRQAVKHGG
FT                 GSIMVWGCVHENGVGPLVLIDGVMRKELYLSILQQNLPVAIEYFGLSVEKC
FT                 XFQQDNPPKHSSYXVQNLISTQNFQCIKWSPXSPYMNPIENLWSPAKSQFA
FT                 RYAVPPNGMMELLEKTKDVWYASPPEFVLGYTQSMPNSIGELKKSKGLWKH
FT                 H"
XX
SQ   Sequence 1622 BP; 529 A; 286 C; 318 G; 480 T; 9 other;
     cactgacgag caaaactgta acacgagttc aatactcgaa cttcaaagct ctgtatcttc        60
     tgttctaatg tatagattct aaaaatctta gtcttgtttt gatggtatgt gtatacacta       120
     tgtttcataa aaatttgaag tcaatcggtt gagggagaga catatgctta agccaaatgt       180
     aataaaagtc aaatgttaca gttttgcacc cattgttcca aaacttttta ttttagttta       240
     taagctattt taaccgttga aattaattta attacatatg gttcactgag cattgatwct       300
     tttaagtaat ttttgcaaag aaataattat gggcagtcag aaaaaaataa aattattgat       360
     ttgctgatag caggtgaatc tgttcggaaa acggctgata aattcggtgt tagccatatg       420
     actgtgcagt gatcaagaga acactgtctg gaaagtattc cagttaattc ttgtggtcga       480
     ccaaaaattt taagtgatcg cgacacacgc tatgwggcca acttggtcac gagcaaccgc       540
     cacataacgc gagtaaagcg gcggtgatgc ttaatttaaa tgtcattgct tggccawttc       600
     gacgcagtct tgtttaacta ggtctaaaag caaaggagat taaaatgaaa ccagccctga       660
     caaaaaggca catcagtttg cgccataaat ttgctgtaac tcatgaaaat ctgactatag       720
     cggattggga tactgtaagt ccccgtaact ttcgtcttaa aaatgaaaac tattccaaaa       780
     tttttgggtt ttcaaggtta tatagtcgaa ctaaacaaaa attgatcgat ttgagtcaga       840
     tgatcgctcc tggtgttgga ctagagaccc caccaagtaa tgtgcggcag gccgtcaagc       900
     acggtggcgg ctcaattatg gtctgggggt gcgtacatga aaacggagtt ggtccgctgg       960
     tgttaatcga tggagtaatg cggaaggaac tgtatttaag catattacaa caaaatcttc      1020
     cagtagccat cgaatatttt ggtctttctg ttgaaaaatg cawttttcag caagacaatc      1080
     ccccaaagca ttcgtcctat tkggtccaaa atttgatatc wacacaaaat ttccagtgta      1140
     taaagtggtc accasaatct ccatatatga atccaattga aaacttatgg agtcctgcta      1200
     aatcgcaatt cgcgagatat gcagttcctc caaatggaat gatggagctt ttggagaaga      1260
     caaaggacgt ctggtacgcc agtccccctg aatttgtgct aggctacacc cagagtatgc      1320
     caaattccat aggagaactt aaaaaatcwa aggggctgtg gaaacatcat taaaaaaaat      1380
     attaataaaa atatttgatc gaaaataacc tgggtgcaaa actgtaacat ttgacttttt      1440
     ttacatttgg cttaagmata ggtttctccc tttatggaat gacttcaaat ttttatgaaa      1500
     catagtgtat acacatacca acaaaacaag actaagattt ttagaatcca tacattagaa      1560
     cagaagatac agccctttaa agttcgagta ttgaactcgt gttacagttt tgctcgtcag      1620
     tg                                                                     1622
//
ID   Mariner-18_DRh repbase;    DNA;    INV; 1536 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1536
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1412-1412 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~600-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1536 BP; 473 A; 271 C; 278 G; 512 T; 2 other;
     cagtggctca cagcttaaag tatgcacttc aaacccctaa cttcaaactt ccatagtgtt        60
     aaaactattg ggcgtactgc awcaaatgtg gtgtcaaatt aaagatgata ttgtttakat       120
     taaattagtg acttcactta ttgtctactt cttcgtttta taaccaaaac ataacaaaat       180
     aataaaatac tgcttatttc tacctcacag cttattttat gcagcaccaa aaatataaaa       240
     atatttggaa agtatttatt ttttttgttt ttttagtatt tagtgtggta gcctttagtg       300
     tctattaccg cttgaagcct ttttggcatc gaatccacta attttttcgt cagatcggct       360
     gatataatgc tcctctcttt gaaaagagca tccttcagct ggtttttgtt cgaaatggag       420
     tattttcgaa tattattctc caaaattgct cacaaatttt cgatcacgtt tagatctgga       480
     gattgagacg gcggaatcat acatgtagct cagccaagac tgctcaaact tgccttgtgt       540
     ttggattatt gtactgatca aatgtgaaat ttgatgttat ttttagattc cgcattaaca       600
     atctcgtgcc caccaccgtg ctttgctgta gcctttaagt tctgcttctg ttgctccgta       660
     ttagctttta gccaaacata agcatttccg tccgatccaa aaatgttaaa ttttgattca       720
     tctgcaaaaa ttacagtgtt ccaaaagtct ggtgtcatca ataggtgagc tttggcatat       780
     gttagcctgg acaacttatt tttcggggca tgtagatggc ttttgggcct gtatgtccgc       840
     tgctggtccg ggaaaactgg acttttttga gtctacaatg gacaaaatga aatatctcaa       900
     tattctcaag gacaatttgt tgcaaagtgc ggaggatctg ggaataaggt caaatttccg       960
     tttttatcat tacaatgatc caaagcacaa ggcgggtatt gtgcagtctt ggctgagcta      1020
     caactgtccc catgtgatga ttccgccgtc tcaatctcca gatctaaacg tgatcgaaaa      1080
     tttgtgagca attttggaga ataatattcg aaaatactcc atttcgaaca aaaaccagct      1140
     gaaggatgct cttttcaaag agaggagcat tatatcagcc gatctgacga aaaaattagt      1200
     ggattcgatg ccaaaaaggc ttcaagcggt aatagacact aaaggctacc acactaaata      1260
     ctaaaaaaac aaaaaaaata aatactttcc aaatattttt atatttttgg tgctgcataa      1320
     aataagctgt gaggtagaaa taagcagtat tttattattt tgttatgttt tggttataaa      1380
     acgaagaagt agacaataaa tgaagtcact aatttaatct aaacaatatc atctttaatt      1440
     tgacaccaca tttgttgcag tacgcctaat agttttaaca ctatggaagt ttgaagttag      1500
     gggtttgaag tgcatacttt aagctgtgag ccactg                                1536
//
ID   Mariner-18_HSal repbase;    DNA;    INV; 2291 BP.
XX
AC   .
XX
DT   12-JAN-2012 (Rel. 19.04, Created)
DT   12-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2291
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 859-859 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           707..1777
FT                 /product="Mariner-18_HSal_1p"
FT                 /translation="MVLSERERITLLMMRGYGDRVRSYEQVAALFNNTYPD
FT                 REPISKSTVQKTVRRFDETGSVKDRQRTGRPKLATNLDKSFEVMQTFVENP
FT                 HSTLRKAAQAHEISTMSIHRILVKEKWHPFKIKITQELSEDDFDRRNEFCD
FT                 EMMCRYDDNNNFFDHIIFSDEASFELNGAVNRHNCRYWSDENPHWMRDIRT
FT                 QYPQKLNVWAGFCERGIVGPFFINGNLNAAIYQELLQNEVIPALENMFDGN
FT                 IENIWFQQDGAGPHYAVAVRQFLDNTFPNRWIGRRGQIEWPARSPDLSPVD
FT                 YFFWGYLKNNVYETKPANLADLRERIIHQVDLISAEMRRNVLNNFYLRLGH
FT                 CQAADGGQFEHLLN"
XX
SQ   Sequence 2291 BP; 704 A; 456 C; 481 G; 650 T; 0 other;
     cagggtgtac caaaagtctg gaaacggtcg aatatttcat aaactatgca ttttagaaag        60
     aaatgtttca gacaaaagtt atttggttcg aggggggaca taagatggtg tcattggatt       120
     gaccttgagt gaacgttcca aggtcatacg gagttcaact ttgttttttt aaatggaacc       180
     ccctattttt cattgcatat tcttgtagct catctcgaga gctttccaaa acactataaa       240
     taagttatgt tttattgagt attttccgag ttatggggct tgaaagttac aataccgccg       300
     gcattagcca aggtgtaccg cgtggaggtt gcacgatcgg atttacacct cttgtgtatg       360
     tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tcacagcaga gataagcagc       420
     tacttgttca aaggatctaa cgtggtcacc atatcctcgc atcattcgca gtaattcttt       480
     ctgaaaagaa tcgacagaag attcaatgaa tgcggaccgt agactagggg aagattcaaa       540
     tatcgaaatt attatacttt tcatagttct tttccaataa aagtcttgct acattaatcg       600
     ttctgatttg acctgtagtc gaacgttttc ctatcctgga tacattcagc tcttcgtatt       660
     acgacacact atcaagcaac tgagtgaaat ttcagtggca tccagaatgg tattgtctga       720
     aagagaaaga attactttac tgatgatgcg aggatatggt gaccgcgtta gatcctatga       780
     acaagtagct gctttattta acaatactta tccagatcgt gaaccgattt cgaagtctac       840
     agtccagaaa acggtcagac gatttgatga aacaggatcc gtcaaggacc gacaacgcac       900
     tggcagacca aaattagcga caaacttgga taagagtttc gaagtgatgc aaacattcgt       960
     cgaaaatcct cattctactt tgaggaaggc agcacaggcg catgagatta gtacaatgtc      1020
     cattcatcgt attttagtga aagagaaatg gcatcctttc aaaattaaaa tcactcagga      1080
     gctatcggaa gatgattttg atcgaagaaa tgaattctgc gacgaaatga tgtgtcgata      1140
     cgatgataat aataactttt tcgatcacat aattttttcc gacgaagctt cttttgaatt      1200
     gaatggagcg gtaaatcggc ataattgccg atattggagt gatgaaaatc ctcactggat      1260
     gcgtgatatc cgcacgcagt atccccaaaa acttaacgtt tgggcgggtt tttgcgaacg      1320
     tggtattgtc ggaccattct tcattaatgg gaatttgaac gcggcgatct atcaggagct      1380
     attgcaaaat gaagtcatac ccgctcttga aaatatgttt gatgggaaca tagaaaatat      1440
     ttggttccaa caagatggtg caggcccaca ctatgcagta gcagtacggc aatttttgga      1500
     taatactttt ccaaatcgat ggataggaag acgtggtcaa atagagtggc ctgctagatc      1560
     accagatctt tctcctgtcg attatttttt ttggggatat cttaaaaaca atgtatacga      1620
     aacaaaacct gccaaccttg cggaccttag ggaacgtata atacaccaag tcgatcttat      1680
     ctcggcagag atgagacgaa atgttttaaa taatttttat ctacggctag gccattgtca      1740
     agcagcagac ggaggtcaat ttgaacactt actcaactaa accacacacc cctacacaca      1800
     cacacacaca cgcacgcacg cgcgcacaca catacgcaca cacacagcag agagggtttg      1860
     gagtcattaa atactacggg agtgacgaac tgtggggtcc ttatctctgc tgtgacacac      1920
     acacacacac acatacacaa gaggtgtaaa tccgatcgtg caacctccac gcggtacacc      1980
     ttggctaatg ccggcggtat tgtaactttc aagccccata actcggaaaa tactcaataa      2040
     aacataactt atttatagtg ttttggaaag ctctcgagat gagctacaag aatatgcaat      2100
     gaaaaatagg gggttctatt taaaaaaaca aagttgaact ccgtatgacc ttggaacgtt      2160
     cactcaaggt caatccaatg acaccatctt atgtcccccc tcgaaccaaa taacttttgt      2220
     ctgaaacatt tctttctaaa atgcatagtt tatgaaatat tcgaccgttt ccagactttt      2280
     ggtacaccct g                                                           2291
//
ID   Mariner-18_LMi repbase;    DNA;    INV; 1332 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1332
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3259-3259 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(160..840,644..1225)
FT                 /product="Mariner-18_LMi_1p"
FT                 /translation="MAATLDVRQKQRAVIEFLCCENETVGNIHKRLKKVYG
FT                 DAAVDRSTVSRWASRLRDESGHGNIEDCPRSGRPRTAHTPDNVQRVNELVT
FT                 ADRRITVNELSRYVGIGEGTVCRILKVLALKKVCARWVPRMLTVAHKETRK
FT                 TVCSELLEQYGNGGDEFLGRIVTGDETWLHHFSPETKRQSMEWHHANSPKK
FT                 KKIQNHTFCWKSYGYGVFRFRRTLACGHHATWNHHKFQVMKHGSIIFHQRR
FT                 RGNQWSGIMQIHPRKKKFKTTPSAGKVMATVFFDSEGLLLVDIMPRGTTIN
FT                 SDAYVTTLKKLQARLSRVRPHRQKQDVLLLHDNARAHVSQKTMEAITKLGW
FT                 TTLKHPPYSPDLAPCDYHLFGKLKDSLRGTRFEDDDSLVHAAKQWLQRVGP
FT                 EFYRAGIQALVPRWRKAVERDGDYVEK"
XX
SQ   Sequence 1332 BP; 392 A; 271 C; 335 G; 334 T; 0 other;
     cgagggtcac tccaaaagaa atgcacacta tttttttaaa tacagttttc attctgcatg        60
     tttgaaagtt ttacagtgtg tagatacatc cttcccgctt gttttcaaac ttagttcaac       120
     ctgttcccgt gagtggcgcc gtcacagcat gtcttcaaga tggctgctac acttgacgtt       180
     cgtcagaagc aacgtgctgt cattgaattc ctgtgctgtg aaaacgagac agtgggaaac       240
     atccacaaga ggttgaaaaa ggtgtatgga gatgctgctg tcgatcgcag tacagttagt       300
     cggtgggcaa gcaggttacg tgatgaaagc gggcacggca atattgagga ttgtcctcgc       360
     agcggcaggc ctcgtactgc acacactcca gacaatgtgc agagagttaa cgaattggtg       420
     actgctgaca gacgcatcac agtgaacgaa ttgtcacgct acgttgggat aggggaagga       480
     actgtttgca gaatactgaa agtgttggcg ttaaaaaagg tttgtgccag gtgggttccc       540
     aggatgttga cagtggctca caaagaaaca cgaaaaacgg tatgcagcga acttttggaa       600
     cagtacggga atggtggaga tgaatttctt ggaagaattg tgacaggtga tgaaacatgg       660
     ctccatcatt tttcaccaga gacgaagagg caatcaatgg agtggcatca tgcaaattca       720
     cccaagaaaa aaaaaattca aaaccacacc ttctgctgga aaagttatgg ctacggtgtt       780
     tttcgattcc gaaggactct tgcttgtgga catcatgcca cgtggaacca ccataaattc       840
     tgatgcatat gtgacgacac tgaagaaact tcaagctcga ctgagtcgtg ttcgaccaca       900
     tcggcaaaag caggatgttt tgctgttgca cgacaatgca cgggcacatg tcagtcaaaa       960
     aaccatggaa gcgatcacaa aactcggatg gacaacactg aaacacccgc cttacagtcc      1020
     tgacctggct ccatgtgact atcatctctt tgggaaactg aaagactctc ttcgtggaac      1080
     aaggtttgaa gatgatgact cccttgtgca cgctgccaaa cagtggctcc aacgtgttgg      1140
     tccagaattt taccgtgcgg gtatacaggc gctggttcca agatggcgta aggcagttga      1200
     gagggatggg gattatgtgg agaaatgaaa atattgttcc taaaggatgt atctacacac      1260
     tgtaaaactt tcaaacatgt agaataaaaa ctgtattaaa aatagtgtgc atttcttttg      1320
     gagtgaccct cg                                                          1332
//
ID   Mariner-18_RPr repbase;    DNA;    INV; 1555 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1555
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3265-3265 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           413..1309
FT                 /product="Mariner-18_RPr_1p"
FT                 /translation="KLRETGSHSRRPNSGRPKVTDPIDDRFIKMQALRKRS
FT                 STASSIKNLVAGVRGITISESTVRRRLRESNLSSRKPVKGPLLTAKHRRQR
FT                 LRFAREHQTWTEEEWKTVLFTDETRVALNSPDGRGRVWRRPGERYSQCCVS
FT                 ETVAFGGGSIMFWGGISWEARTELVPIQGGALNALRYVEMILQDHVMPYVP
FT                 FIGPESLLMHDNARPHKAICVSEYFNATGIRNLEWPARSPDLNPIEHVWDN
FT                 LKRKVRSRDPPPTTLEMLKTAVLDEWDNIPQDFIENLFRGRPKRMEVVIKA
FT                 RGGNTSC"
XX
SQ   Sequence 1555 BP; 462 A; 285 C; 337 G; 469 T; 2 other;
     ctcccagtca aaaaaatcgc aacacctata aatttcgatt tttttttaga ttttgaagcc        60
     tagcccacct tttattttac ttcttgtaat aggattaatt tatgaattag ctgaggagag       120
     acagtaggga ttattaacac ctttgttact cattatttgt caacaaacga aggattaaat       180
     gtttatcttg attgatttca cttcctcttt cagtctgtat ttacctttag tttgcccckt       240
     acatcagttt ctttctttct ttattcaagt gataatgagt cgtttaagcc gtgatggttc       300
     agtaagagta ataactcttc acgggccccg gccttcggga agaaggaaaa tctttgcgaa       360
     acaacgctaa tcgccttggt tttcatttct ctactgtttc aagggccatt aaaagctcag       420
     agagacaggg agtcactcaa gacgaccaaa ttcaggacgk ccaaaagtca cagatcccat       480
     tgatgatcgt tttattaaaa tgcaagcgct caggaaacgc agttcaacag cttcaagcat       540
     taaaaacttg gttgctggtg ttcgggggat aacgatctca gagtctactg ttagaagaag       600
     actgagagag tcaaaccttt catccagaaa gcctgtgaaa ggaccacttc ttactgcaaa       660
     acaccgtaga cagagactaa gatttgcaag agaacaccaa acatggactg aagaggaatg       720
     gaaaactgtc ctattcactg atgagacgag ggtggctcta aacagtccag atggccgtgg       780
     gagagtatgg agaagacctg gagaacggta cagtcagtgc tgcgtgtcag aaactgtggc       840
     atttggaggg ggctcgatca tgttctgggg tggcatttct tgggaggcac gtaccgagtt       900
     ggtaccaatt caaggagggg ccttgaatgc tttaaggtat gtggagatga ttttacaaga       960
     tcatgtaatg ccctacgtgc cattcattgg tcctgaatca ctgcttatgc atgataatgc      1020
     ccggccacat aaggcaatat gtgtttctga gtacttcaac gcaaccggta tccgtaactt      1080
     agagtggcca gcaagaagtc ccgaccttaa cccaatcgag catgtgtggg acaatcttaa      1140
     aaggaaggtt cggtcgcggg atcctcctcc taccacactt gaaatgctga agacagctgt      1200
     attggatgag tgggacaaca tcccccaaga ttttattgaa aatcttttta gaggtaggcc      1260
     aaaaaggatg gaagtcgtta ttaaagccag aggaggcaat acctcttgtt aaattctgtt      1320
     ctaaacctaa aaaatgtaca atttaaaaaa aaaaaataat tttttgtgtt gttttgaaaa      1380
     aatttttgtt ttaattaaac atgagttcaa ttttaatttt ttgtttaata aaattgatta      1440
     ttcttgacag gctttgttta ttgtgaattt atgagcatat ttgtgaaata taacacctgc      1500
     ttttcccgag aaattctaaa atttctgggt gttgcgattt ttttgactgg gagtg           1555
//
ID   Mariner-18_SIn repbase;    DNA;    INV; 1269 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-18_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1269
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 334-334 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~40bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1213
FT                 /product="Mariner-18_SIn_1p"
FT                 /translation="MRDLSDFERGQIVGARLAGASVTKTAELFNVSRATVS
FT                 TVMTAYTKHGKTSSAKRNSGRNPKLTDRDRRTLKRIVARQHKTTAAKVTAE
FT                 LNAHLSNTVSTKTVRRELHKANIHGRAAIAKPLITEANAKLRKKWCHDHKT
FT                 WTLDDWKNVVWSDESSFTLFPTNGRVYVWRTPKEAYDPDCLLPTVKHGGGS
FT                 VMIWAAISWYSAGPLIHITGRITANEYLDILNDEVLTMTSILLPNTAIFQD
FT                 DNAPIHTAKKVQSWFEEHQNIIKHLPWPAQSPDLNIIEPLWGVLEQRIRSR
FT                 FPSPTSLKQLADALVQEWDNIPLETIQTLYESIPRRIAAVLQANGGPTPY"
XX
SQ   Sequence 1269 BP; 389 A; 276 C; 290 G; 314 T; 0 other;
     caggggttgg acaaaataat atgaatacca tgcaatatag tacagtttgt tgcatgttgg        60
     caacactgct tccgtgtaaa taatgcgacg cgtatgtaat gcgcagttta cgtggcaggt       120
     cttgtaggtt atatttcagt gtattatacg ctttgttctg cgacggttat aacaagcgat       180
     cggtgaaatg cgtgatctct cagacttcga aagagggcaa atcgttggtg ctcggttagc       240
     gggagcgtct gtgacgaaaa cagctgaact gtttaacgtc tcacgagcga cagtatccac       300
     ggtaatgaca gcatacacaa aacatggtaa aacatcatcg gcgaagagga atagtggacg       360
     aaacccaaag ttaactgaca gagaccgacg aacattaaaa aggattgtgg ccagacaaca       420
     taaaactacc gcggcaaaag tgacagcaga actcaacgct cacctgagta atactgtttc       480
     gacaaaaaca gtacggcggg agctccacaa agctaacatt catggaaggg ctgcaattgc       540
     aaaacccctt ataacggaag ccaacgctaa gctgcgaaag aagtggtgcc acgatcataa       600
     aacctggaca cttgatgatt ggaagaatgt ggtatggtcc gatgaatcat cgttcacatt       660
     gtttcctact aacggccggg tttatgtatg gagaacccca aaagaagcct acgatccgga       720
     ctgcctgctt cctacagtca agcatggggg aggttccgtt atgatttggg cggctatatc       780
     gtggtattca gctggtcctc tcattcacat cactggccgg attactgcga atgaatatct       840
     cgacatcctc aatgatgaag ttcttactat gactagcata ctgctgccaa acactgccat       900
     attccaagat gataatgcgc ccatacacac agccaaaaag gttcagtctt ggtttgagga       960
     gcatcagaat atcatcaaac atcttccctg gccagcacaa tcgccagacc tcaacataat      1020
     tgaaccgttg tggggagttt tagagcagag aataaggagc agatttccat ctccaacatc      1080
     attgaagcaa ttggcggatg ctttggtaca agaatgggac aacattccgt tggaaactat      1140
     tcagacactc tacgaatcta ttccgcgaag aattgcagct gttctacaag caaatggtgg      1200
     cccaacacct tattaataaa taaatattgt gtatatgtca ggtgttcata ttattttgtc      1260
     caacccctg                                                              1269
//
ID   Mariner-19_AEc repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 562-562 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(174..596,600..1208)
FT                 /product="Mariner-19_AEc_1p"
FT                 /translation="MSEFIPKKQHLREVLLHYFILKKSAAETHRLLVDIYG
FT                 EHAPSKTSCKEWFRRFNSGDFDVRDKEREGAPKKFEDAELQALLEEDSCLS
FT                 LDRLAKELNVDRSTVGKRLHAMGMVQKEGNWVPYKLKERDMERRLVICEML
FT                 RQQQRKGFLHRIVTGDEKWIYYDNPKRLKAWVMPGEPGPSTPKRNIHASKI
FT                 MLCIWWDQRGIIYYELLKPSETITGDRYRLQLIRLNQALKEKRPEWDNRHN
FT                 KLILLHDNARPHVAKPVKKYLEGVKWEILPHPPYSPDIAPSDFHLFRSMQS
FT                 ALSGERFNSYEGIKKWLDEWIASKEPDFFIRGIRLLPERWEKVVASEGAYF
FT                 E"
XX
SQ   Sequence 1287 BP; 407 A; 237 C; 298 G; 345 T; 0 other;
     ttgggtatgg gaataagttt ccgcccattg cagaaagatg tcgttagtag cattgctcgt        60
     gtgtttgata gaacggcaag acatgttttt gaaaggtgtg tgtccaaact tttgagccca       120
     atagatggca ttcgttcgaa gcgtaacaaa gagtaacttt ttttgcgttg aagatgtcgg       180
     aatttattcc aaaaaagcaa catttgcggg aagttttact ccattatttt attttaaaga       240
     aaagtgctgc ggaaacgcat cgtttgctcg tagatattta cggtgagcat gctccatcga       300
     aaactagttg taaagaatgg tttcggcgat tcaacagtgg tgattttgac gtgcgtgaca       360
     aagaacgcga aggtgcaccg aaaaaatttg aagatgcaga attgcaagca ttactcgaag       420
     aagattcgtg tttatcgctc gataggttgg caaaagagtt aaatgttgat agatccactg       480
     ttggaaaacg tctacacgca atgggaatgg tgcaaaaaga aggaaattgg gtgccataca       540
     aattgaaaga gagagacatg gaaagacgtt tggtcatctg cgagatgctt cgtcaatgac       600
     aacaaaggaa gggttttcta catcgtatcg taactggcga tgaaaaatgg atctactacg       660
     ataaccctaa acgcttgaag gcatgggtga tgccaggtga accaggtcca tcaacgccaa       720
     aacgaaatat ccatgcttcg aagattatgt tgtgcatctg gtgggatcaa agaggtatta       780
     tatattatga gctgctcaaa ccgtccgaaa ccatcactgg cgatcgttat cggctacaac       840
     tgatacgttt aaaccaagct ttgaaagaaa aacgaccgga atgggacaat aggcacaaca       900
     agctgattct gttacatgac aacgctaggc cacacgttgc aaaaccggtc aagaaatact       960
     tggaaggagt aaagtgggaa attctgcccc acccgccgta ttcaccggac attgcccctt      1020
     cagatttcca tttgttccga tccatgcagt cggccctttc tggagaacga ttcaattctt      1080
     atgaaggtat caaaaaatgg cttgatgaat ggatcgcttc aaaagaacca gattttttca      1140
     ttcgaggaat ccgtttatta ccggaaaggt gggagaaagt tgtcgcttcc gaaggagcat      1200
     actttgaata aactcactta tatagatttg tttaaataaa cacatctttt tcatttaaaa      1260
     agggcggaaa cttattccca tacccaa                                          1287
//
ID   Mariner-19_DAn repbase;    DNA;    INV; 1141 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1141
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 275-275 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~200-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           242..877
FT                 /product="Mariner-19_DAn_1p"
FT                 /translation="MMEPPPCLTVCRTFLFDWIVGSLVQYQEQIFLFPRLY
FT                 GQMKPKLIGSSQMDAPGIVLRILRSSHHRSIMVWGSNGVGPLVLIDGIMRK
FT                 EQYLAILQENLPKVIGNMGLSVEKCVFQQNNDPKHTSILVKNWISKQKFQF
FT                 MKWPSQSPDMNPIENLWSHVKSQLAKYAVPPSGMKELWERTQDIWNAIPPE
FT                 MVQRYTQSMPDRIEELKKSKGM"
XX
SQ   Sequence 1141 BP; 380 A; 209 C; 224 G; 328 T; 0 other;
     cactgacgag caaaactgta acacgagttc attggtgcaa cttcaaaggt ctgtaacttt        60
     ttttctaatg cacgcatttt aaaaatctta gtcttttatt ggttgtatca tatactatta       120
     ctaagcaaaa ttgaaagtca tttgttatca gttaaagaaa atgacacgcc aaactgtaaa       180
     aaaagtcaaa tcggttagca ccaagggacc aactccgttt gagttaatgc acccctaaac       240
     catgatggaa ccgccaccgt gcttgacggt ttgtcgcaca ttcctttttg actggatcgt       300
     aggatcctta gtacaatacc aggagcaaat atttttgttt ccaaggttat atggtcagat       360
     gaaaccaaaa ttaatcggtt cgagtcagat ggacgctcct ggtattgtac taaggatcct       420
     acgatccagt caccaccggt ccatcatggt ttggggctca aatggagttg gtcccttggt       480
     gctaatcgat ggaattatgc gaaaggagca atatctagcc atattgcaag aaaatcttcc       540
     aaaagttatt gggaatatgg gtctttctgt cgaaaaatgc gtttttcagc aaaacaacga       600
     cccgaagcac acgtccatat tagttaaaaa ttggatttca aaacagaaat ttcaatttat       660
     gaagtggcca tcacaatctc ccgatatgaa tccaatagaa aacttgtgga gtcacgtgaa       720
     atcgcagctg gcgaagtatg cagttcctcc aagtggaatg aaggagttgt gggaacggac       780
     acaggacata tggaatgcta ttcccccgga aatggtacaa cggtataccc aaagtatgcc       840
     cgatcgcata gaagagttga aaaaatccaa ggggatgtag actcattatt aaaaaatcat       900
     taaaaaaaat atttgttaaa aaaataacta gagtgcaaaa ctgtaacatt tgactttttt       960
     tacagtttgg cgtgtcattt tctttaactg ataacaaatg gctttcaatt ttgcttagta      1020
     atagtatatg atataaccaa taaaccaaga ctaagatttt taaaatgcgt gcattagaaa      1080
     aaaagttaca gacctttgaa gttgcaccaa tgaactcgtg ttacagtttt gctcgtcagt      1140
     g                                                                      1141
//
ID   Mariner-19_DF repbase;    DNA;    INV; 935 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-19_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-935
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 786-786 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 31-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 935 BP; 304 A; 184 C; 187 G; 260 T; 0 other;
     cagggtgggc catttaaatt tgacccattt ggcaaccctg taacttttga cagcgtcgac        60
     agatcgtcaa atgtcatacc acgttggaag cgtcagtcga agacaattga taccatggaa       120
     caatacactc caaaggaacg cgctcaaatt gttcagctct acattgaaaa taaattctca       180
     attgtgttaa cccaacgatc atcgtgtcag acgaggcaca tttcttgatg aatggaggcg       240
     taaataagca aaattgtcga ttttatgcca ccgaaaatcc tcaattaatc gaagaacagc       300
     cactttacga ccaaaaagtt acagtttggt gcggtgtttg cgcgaatatg atcatcggac       360
     cgtatttttt cgaagacaat gatggagcca cgataaccgt caatggtgag cgttatcgag       420
     caatgataac cgaatttctg atgcctatta ttcgtgaaaa tgtcatggat aacttctggt       480
     ttcaacagga cggggcaact tgccatacag ctagagcaac aatcgattta ttgcgaacat       540
     tgttccctgg gcggttgata tcgaaaagtg gtgattttga ctggccccca acatcaccag       600
     atttgacggc accagacttt tatttgtggg gttatttgaa atccaaggta tacgctaata       660
     aaccaaaaac cttaagtcaa ctaaaagaca acattagacg tgaaatagcc gccatatcgt       720
     ctgaaacatt gaccaaagtc atggaaaatg ctgaaaaaag aatgcattcg gctgtcagag       780
     ctaaaggtgc ccatttacgt gatatcattt ttaataataa tttgtaaaaa atctccttgg       840
     accaaaataa atgatttttg gaataaaaaa aaattgtcca cttttttgtt tttgttttaa       900
     gaatcaagtg ggtcaacttt aaatggccca ccctg                                  935
//
ID   Mariner-19_DK repbase;    DNA;    INV; 838 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-19_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-838
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1212-1212 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 838 BP; 299 A; 139 C; 165 G; 235 T; 0 other;
     cacatgccag aaaaagtatg cgtacaaact cgatgcctaa ctttgatcgc taaaaaaaca        60
     tatttatata attgatatcg acttaaattt tttttatatt gtttacacgt ttattgatta       120
     tatatatatt tagtttttat tgtcataata gcttaacttt atttattaaa attaaaaaac       180
     gaaaaagtga cgaattttta gccagaaaaa gtttgcgtac aaatttgaaa aacgatgtgt       240
     atttgctctg tatgcagctt tgggcaccgt tagattacta aaaacggtaa acaaagctct       300
     aagaactcct tggcactcgt cctttgagtt aatttcttca cttcgtggaa aaaatcgcaa       360
     agggcaagaa gacaaaagaa attgatcccg atttaaggat attaattgta aaactccgag       420
     ataaggggaa aactctgcgg gaaatcggga aaattgttgg cagagctcat tcctctatac       480
     aaatagtgct caaaaacttt gttttaaacg ggtcaattag gtcaaagcca cgttttggaa       540
     ggccacctaa gctgacggat cgagagaagc gggacgtttt gaagagtgtg aagctgaatc       600
     ctcgattaac agcctttaaa attagtcagg acatcaagga gaagtacaac aaagatattc       660
     ataaggattc aatccgaaaa atttggaaaa agaggactta catgccccta ctgcgcggaa       720
     gacacccttg atatagccgg caaataagag aaagcaaacg gatttggcca aaaaaaattt       780
     ccaggagcct gtagtgttct ggaacaaggt cctatttagc gacgagagta aattctgc         838
//
ID   Mariner-19_DRh repbase;    DNA;    INV; 871 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-871
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1413-1413 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~40-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 871 BP; 244 A; 192 C; 212 G; 222 T; 1 other;
     cagggtgcgg cgcttaaatc cggacaaatt tgaatttgaa tttcccgcca catagtcatt        60
     ccgccagagg tcgctactgg cgttcttgta agccatgggc atctcgtaaa tagtcataac       120
     ctaaaaatgg ccgggatgtt acgtacaagt gcggagtaca accgaagagc cgcgattatc       180
     gaaagtcttc gcgctgggcg ttcgccgaca gaaataattc gattcttcgg gtacccgaga       240
     tcaactgtat acgatattac atccaagtac aatgcttctg aaaagtcaag ggaaggtttt       300
     tctaacccag cgaggagaac tcattcgagg gaacgcattt cacgaactcc ggcacgtccg       360
     tggaaaaggc tcaggckctg acgaatgttg tgaaaccgtg gatggtaact gtggccgcgg       420
     ggaaacaata tgtctttcgg caggacggtg caccggccca cacgagccat ttagtccaaa       480
     actggctatc ggataacgtg gacatgttct ggagcaaaga gttctggccc ccgaatagcc       540
     cggatttgaa ccccctggac tattatgttt ggagcgtagt cgaaagggtt actaacaagt       600
     ccaggcaccc taatgtcgca tctctacgca ccgctatcga agcagcattc accaatatgg       660
     acagcgctgt tttaaagaga gcatgcgacc gttttaggac aaggatagag gcggtcatta       720
     gggctgaagg aggttatata gagtaattta ctctcggcag gaacaactaa tatttctgta       780
     aatgaatttt caattttttt catattttgt ttaaataaat ttgtttttaa ataaacaatt       840
     aaatttgtcc ggatttaagc gccgcaccct g                                      871
//
ID   Mariner-19_HSal repbase;    DNA;    INV; 2055 BP.
XX
AC   .
XX
DT   12-JAN-2012 (Rel. 19.04, Created)
DT   12-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2055
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 860-860 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           454..1521
FT                 /product="Mariner-19_HSal_1p"
FT                 /translation="MLTEKERILLLIYRGFGDRIRSYQEVADLFNVTHPDL
FT                 DPISKSTVCRTVTRFFETGTVKDRSRSGRPKSATNDDKTLDVLQSFQENPH
FT                 LSVSKTAQAHDISEGSVSNILKKHKYYPYKIVIAQELMEDDFDRRIQFCEE
FT                 LMHRCDDNANFLNFVIFSDEATFQINGAVNRHNCRYWSDENPHWMSDLRTQ
FT                 YPQKLNVWTGICSRGIIGPFFIDGDLNAEKYENLLRDHIIPEIENLFDANM
FT                 QNVWFQQDGAGPHFAVRVREFLNRSFPNRWIGRRGAIEWPARSPDLSPLDF
FT                 FFWGHIKSKVYATKPCNLEDLKNRIMQEASLITLEQISHVINSFYERLAHC
FT                 QTVEGRHFEHLIN"
XX
SQ   Sequence 2055 BP; 650 A; 385 C; 398 G; 622 T; 0 other;
     cagggtcctc aaaaagtccg ggaacgctaa aatatttcga aaaatatgaa agatacgaaa        60
     aaatgtttga tacaaaagtt gtagggctta aaaagatcta tttagtagtc atatcagttt       120
     gaccataggt ggcgttgcta aggtcatatg aaggtcaact ttgttttttt aaatggaacc       180
     ccctattttt tattggaaat tcttgtagct tatctcgaga gctttccaaa acactataat       240
     gaagtcattt tttattaagt tctttccgag ttatgacgct tgaaagttac agtaccgccg       300
     gcattagcat tacccaaagt gtaccgcgcg gaggtgcgat cagagatgct tctcggtcca       360
     catattctaa aaacgagttg cgctcgctcg tatctcgctc tttgtctctt ttgtttcttt       420
     ttccgattat aatatcacat ttttctctga aaaatgttga ccgaaaaaga aagaatattg       480
     ctacttattt atcgaggatt tggtgaccgt attagatcat atcaagaagt agctgatcta       540
     ttcaatgtta cacatcctga tctcgatcct atttctaaat ccaccgtttg cagaacagtg       600
     actcgttttt ttgaaacggg aacagttaag gaccgatctc gcagcggaag gccaaaatcc       660
     gcaactaatg atgataagac tttggatgtt ctccaatcat ttcaggaaaa tcctcatttg       720
     tccgtatcaa aaacagcaca agcccatgat atcagtgaag gcagcgtttc taacatttta       780
     aaaaagcata aatattatcc gtataaaatt gttatcgctc aagaacttat ggaagatgat       840
     tttgatagaa gaattcagtt ttgtgaagaa ctgatgcatc ggtgtgatga taatgctaac       900
     tttttgaatt ttgttatttt ttctgatgaa gccacatttc aaataaatgg tgctgttaat       960
     cgccacaatt gtagatattg gagtgacgaa aatccacatt ggatgagtga tcttcgcaca      1020
     caatatccac aaaaattgaa tgtttggaca gggatctgta gtcgcggtat tataggccca      1080
     tttttcatag atggtgattt aaatgctgaa aaatatgaaa atttattgcg agatcatatc      1140
     attcctgaaa ttgaaaattt atttgacgca aacatgcaaa acgtttggtt ccagcaagat      1200
     ggagcaggac ctcattttgc ggtacgagtt cgagaatttt taaaccgttc ttttcctaat      1260
     cgatggatag gtaggagagg tgccattgag tggcctgcta gatcacctga tctatctcct      1320
     cttgatttct ttttttgggg acacatcaaa agtaaggttt atgcgacgaa accatgtaat      1380
     ttggaagacc tgaagaatcg aataatgcag gaagcatctc tgatcacttt agaacaaata      1440
     agccatgtga tcaatagttt ctatgaacgt ttagctcatt gccaaacagt agaaggaaga      1500
     cattttgaac atttgattaa ttgaaaaagt aaaaaacaat agcttgaaaa atgttaccta      1560
     cacacacaca cacacacacg cacacacaca cactacggag agggtttgga gtcttaaaat      1620
     actgcgggag tgacgaaccg tagggtcctg atctctgtag tgacacacac acacacacac      1680
     acgcgcgcgc gcgcgcgcgc gaggtgtaaa tccgaccgtg caacctccgc ggtacacttt      1740
     gggtaatgct aatgccggcg gtactgtaac tttcaagcgt cataactcgg aaagaactta      1800
     ataaaaaatg acttcattat agtgttttgg aaagctctcg agataagcta caagaatttc      1860
     caataaaaaa tagggggttc catttaaaaa aacaaagttg accttcatat gaccttagca      1920
     acgccaccta tggtcaaact gatatgacta ctaaatagat ctttttaagc cctacaactt      1980
     ttgtatcaaa cattttttcg tatctttcat atttttcgaa atattttagc gttcccggac      2040
     tttttgagga ccctg                                                       2055
//
ID   Mariner-19_LMi repbase;    DNA;    INV; 1897 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1897
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3260-3260 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(495..1061,889..1578)
FT                 /product="Mariner-19_LMi_1p"
FT                 /translation="MERYSWTERADMHCAYGAADGNAHAAQRLYVQRFPNR
FT                 RVPDPRLFTAIHRSLRETGSLEVSFPLARSRNGTCDFKAYFETRCIHFVLK
FT                 VRRPDGRGRQRTVRTPGFEEEALALLESTPSTSSRCVAREMGVSHSTIWRV
FT                 WHEDDLHPYRLQKVQALKPDDFPRRIEFCQWFFAKVCHSTGISELRTFYGA
FT                 IPQFGVCGMKMICTPTAFRRFKPLSQTIFHVELNSASGFLQKCAIQPEFPN
FT                 CVLFTDEASFTREGMFNSHNQHVWARENPHAAFVRGHQDRFAVNIWAGLVG
FT                 DNLVGPYMFPRRLNANIYLTFLRETLPELLEHVPLNVRQQMWYQHDGASAH
FT                 FAHAVRMHLDETFGENWIGRSGPVAWPARSPDLTPIDFFFWGHLKSVVYET
FT                 PIETDEELIANYGSLRCNIHFARSV"
XX
SQ   Sequence 1897 BP; 453 A; 466 C; 495 G; 483 T; 0 other;
     cagggtgtat ctgaaatgaa tgtagaaaat gagagggctg gtagagtggg tcataacaag        60
     catatttcac atagcaaccc atgtccgcat cccttagcgt acggcgctag gcgtcgttga       120
     atagcgtcgc gcgccgccaa gagggtaggc acacaacatg ccatccgagt cgtcacagta       180
     gcgggactgc agggcaacgt tttcaatgta tttgtgacac caaggtaaaa gaggcgtcgg       240
     gttgaaggtt tatgaccttt atttgcaaac gctgtagtcg gcatagttgc agatattcca       300
     ggcgggacaa cactacggtt ttccgccatt tactgggacg tgaacgcgtt gcttttggcc       360
     gttcacatgc ctgtttgata ggttttgcat agacggcagc acctgtgcac actgcagagt       420
     ctggttcgcc ctgcgtcagt ttgtcatcaa acggggacac tcttgtgttt gttactgtgt       480
     ggagcggaca ggaaatggag cgctattctt ggacggaaag ggcagacatg cactgtgctt       540
     acggggcggc ggatggaaat gctcacgctg ctcaacgttt gtacgttcag cggtttccga       600
     atcgtcgagt gccagatcca cgcctattta ctgccatcca caggtcccta agagagacag       660
     gttcacttga ggtaagtttt ccactggcac gttctcgtaa tggcacatgt gactttaagg       720
     cctacttcga aacccgatgt attcattttg tgttaaaggt gcgaaggcct gacggacgcg       780
     gtcgtcaacg taccgtgcgt acaccagggt ttgaagagga agcgttagca ctgctggaaa       840
     gcacaccctc aacaagctcg cggtgtgttg cacgagaaat gggtgtaagc cattccacaa       900
     tttggcgtgt gtggcatgaa gatgatttgc acccctaccg ccttcagaag gttcaagccc       960
     ttaagccaga cgattttcca cgtcgaattg aattctgcca gtggtttttt gcaaaagtgt      1020
     gccattcaac cggaatttcc gaactgcgta ctttttacgg atgaagcatc ctttacacga      1080
     gagggtatgt tcaacagcca caatcaacac gtgtgggcaa gggaaaatcc gcacgccgcc      1140
     tttgttcgtg gtcaccaaga tcgcttcgct gtcaacattt gggctggctt ggtaggcgat      1200
     aatctggtcg gcccatacat gttcccccgg cgactgaacg caaacatcta cctaaccttt      1260
     ttacgagaaa ctctgccaga gttattggaa catgttccac tcaatgtgcg acagcaaatg      1320
     tggtaccaac acgatggtgc atctgcgcac tttgcacatg cagtgcgaat gcatttggat      1380
     gaaacctttg gtgagaactg gatagggcgc agtgggccgg tggcatggcc tgcacgttcc      1440
     cccgacttga cgcccattga tttcttcttc tggggccacc tgaaatctgt tgtctacgaa      1500
     acacccattg agactgatga agagctgata gcgaattatg gcagcctccg atgcaatatc      1560
     cactttgcca ggagtgtttg aaagagtgcg acaatcactg cagcgtcgtt gcacggcgtg      1620
     cattcaagca ggagggcgta ctttcgagca ctttttgtaa ctgttgtcaa ataaaggtta      1680
     taacacttca acccgacttc tcatttaccc tgctgctaca aatacattga agacgttgcc      1740
     ctgcaaaccc gctactgtga cgactcggat ggcatgttgt gtgcctaccc tcttggcggc      1800
     gcgcgacgct attcaacgac gcctagcgcc gtacatgggt tgctatgtga aatacgcttg      1860
     ttatgaccca ctctacattc atttcagata caccctg                               1897
//
ID   Mariner-19_RPr repbase;    DNA;    INV; 1258 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1258
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3266-3266 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(389..787,838..1257)
FT                 /product="Mariner-19_RPr_1p"
FT                 /translation="MLRAEVEANPCQTIEELSNTLNQPWSTVQEHFKSLCL
FT                 GPPIICPKRTKPTDPSHATYCFNGTIQNRFFDRLITGDEKWVLYDNPKRKR
FT                 QWLSPNESPRSTAKPGLHPKKALLCVWWSIRGIVHFEVLQPGQNCSKSIRR
FT                 LSTERASFCNTTMQDRTVQGEPWKKLMNWGGRYCLTHHTRPMSHPRISIYS
FT                 DPYNIFLVAKNLKIWMMSKMPSRDILLKNQLIFIGPGLKICTLDGKRLLIT
FT                 RVTILLIKNKDLLKIYSFEFNVRKRHYFPVPL"
XX
SQ   Sequence 1258 BP; 381 A; 261 C; 262 G; 354 T; 0 other;
     atggggggac cggaaagtaa tgtcgtttct gcgcatgtcg atatttggtt gtcatttgtc        60
     agctcattgt gtatctcgaa ggcgcgccaa agtcaattta aggttattgt gacttgttca       120
     cttctaaata attcaatatt aaactctttt ttttgcagtt tggggtgaaa tggccagcca       180
     aataccagaa gagcatatac ggcattgtat gctttttgag tttcgctagg gtagtaacgc       240
     aacaattgcg accaaaaaca tttgcgatgt ttatccaagt gcattagacg ttcgtaaatg       300
     ccaaagatgg ttttccaagt tcagatccgg taattttgat ctctctgact cctatcgatc       360
     aggaagacca acaacattag acaacgacat gctaagggca gaagtggaag caaatccatg       420
     tcaaacaatc gaggaactgt caaacaccct taaccaacct tggtcgaccg tccaggaaca       480
     ttttaagtct ttgtgtttgg gtccccccat aatctgtccg aagagaacaa agccaaccga       540
     tccatcacat gcaacgtatt gcttcaacgg caccatacag aaccgttttt ttgatcgttt       600
     gatcactgga gacgaaaaat gggtcctata tgataatcca aaacgcaaaa ggcagtggct       660
     ctctccaaat gaatcaccac gaagtactgc gaagccgggt ttacatccca aaaaggcgct       720
     tctgtgtgtt tggtggagta ttcgcggaat tgttcacttt gaagtgctgc aacctggaca       780
     aaactgttaa tgcagacctt tattgtgaac aattggatcg agtgaaccaa tctttaatcg       840
     aaaagtatcc ggcgattgtc aacagaaagg gcgtcattct gcaacacgac aatgcaagac       900
     cgcactgtgc aaggcgaacc ctggaaaaaa ttaatgaatt ggggtgggag gtactgcctc       960
     acccaccata ctcgcccgat gtcgcaccct cggatttcca tttattccga tccctacaac      1020
     attttcttag tggcaaaaaa tttgaaaatt tggatgatgt ccaaaatgcc atctcgagat      1080
     attttactca aaaaccaatt gatttttatc ggtccgggat tgaaaatttg cacactagat      1140
     ggcaaaaggt tgttgataac gagggtgact atattattga ttaaaaataa agacttatta      1200
     aaaatttatt cgtttgaatt taatgtaaga aagcgacatt actttccggt ccccctat        1258
//
ID   Mariner-19_SIn repbase;    DNA;    INV; 1335 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-19_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1335
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 335-335 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. ~40bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..1233
FT                 /product="Mariner-19_SIn_1p"
FT                 /translation="MSTTIESPAKCEVRSVIRFLQAEGNNAAEIHRRMCRV
FT                 YGNEFMSDGVARDWCRQFREGRTDIHDEAGRGRKSVATEAIVQQVDQVVRE
FT                 RRRFTISELTDTFPQISRSSLYKIITENLGYHKLCARWVPKMLTDGHKTRR
FT                 MGSAVMFLRRYHDEGDEFLKKIVTGDETWVKFENPETKEQSKQRMHSHSPN
FT                 KPKKFKQTFSNKKQMATVFWDQKGILIVDFMEQGTTINTARYCETLQKLRR
FT                 AIKSKRRGMLSSGIVLLHDNARPHTAGPTQRLIEKFKWDIFDHPPYSPDSA
FT                 PSDFHLFLHMKKALGGQRFNSNEELQIGVTNWLQKQAETFFAEGIKKLVTR
FT                 YEKCLNQNGGYIEK"
XX
SQ   Sequence 1335 BP; 408 A; 277 C; 319 G; 330 T; 1 other;
     cgagggctat tttttaatta acctccgata acattgtaca aaattcctag ttgcaataca        60
     gaacccgttc ttgcgcaatt aagttggtag cactgttacc tgtttcccca ccattggtcg       120
     gaattccatt gttagtgaga gtcaagcagc gagcgtgtaa acatgtcgac tacgatcgag       180
     tctcccgcca agtgcgaagt gcgttctgtt attcgctttt tgcaggccga agggaataat       240
     gcagctgaaa ttcatcgaag aatgtgtcgt gtgtacggta acgaattcat gagtgacggc       300
     gtggcgcgtg attggtgtag gcaatttcga gaaggacgta ccgacattca cgacgaggcc       360
     ggcagaggaa gaaaatctgt ggcaactgaa gccatcgttc agcaagtgga tcaagttgtt       420
     cgtgaacggc gtcgcttcac catttctgaa ctgaccgata cctttcctca aatttcaaga       480
     tcttctctgt ataagattat tacggaaaac cttggatacc ataagttatg tgcgcggtgg       540
     gtcccgaaga tgctgactga cggacacaag actcggcgaa tgggctcggc tgtaatgttt       600
     cttcgacgtt accatgatga aggggacgaa tttttgaaga agattgtcac gggggatgaa       660
     acgtgggtca aattcgaaaa tccagaaaca aaagaacagt cgaaacagcg gatgcacagc       720
     cattctccaa acaagccgaa gaaatttaag caaaccttct caaacaaaaa gcagatggct       780
     accgtgttct gggatcaaaa gggaatcttg atcgtcgact tcatggaaca gggaacaaca       840
     atcaacacag ccagatactg tgaaacgctg cagaaattgc gcagagcaat caagagcaaa       900
     cggagaggaa tgctgtcatc gggaattgtt ttgctgcatg acaacgctcg acctcacact       960
     gccgggccga cgcaacgact tatcgaaaaa ttcaaatggg atatattcga tcatccgccg      1020
     tatagcccgg actcggcgcc tagtgatttc catctgttcc ttcacatgaa gaaggcacta      1080
     ggaggacaac gtttcaattc aaatgaggag ctacagatcg gcgtgacaaa ctggctacaa      1140
     aaacaggcgg aaacgttctt cgcagagggt ataaaaaagc tcgtgactcg ctatgaaaaa      1200
     tgtttgaatc aaaatggcgg ttatatcgaa aaatagttta agtatgtata taacttttgt      1260
     aaataacaca ttataaaaat tcattgttgt tttttattac agcgctntcg gaggttaatt      1320
     aaaaaatagc cctcg                                                       1335
//
ID   Mariner-1B_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 840-840 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1208
FT                 /product="Mariner-1B_HSal_1p"
FT                 /translation="MATDKVHIRHCILYEFQQGKNAARACESICSFLGEGV
FT                 VSYDVCAFWFRRFKSGDFSLSDKERPGGPRKCGNNDLEQLLAENSAQTQKE
FT                 LAEQLGVTQQTISKRLHEMGKIQKEGKWVPHELTEANKNQRVAVCLSLLNK
FT                 QRRKSFLWKIVTGDEKWILYDNPKRRKSWVNPGEPSTSVAKPKHFGKKILL
FT                 CIWWDMKGVIYYELLKPNETITADRYQHQLIRLSQELERKRPYSGKGERPV
FT                 KLLHDNARPHIASTTKDIIMSLGWDVLQHPAYSPDIAPTDYHLFRSMQHAL
FT                 SDTHFKSVDEIRKWLDDFIVSKDTTFFRHGIHQLPERWLKVIENNGEYFD"
XX
SQ   Sequence 1287 BP; 417 A; 257 C; 275 G; 338 T; 0 other;
     ttaggtgtac aaatgaataa tccaaacttt tttaagcggc taagaaatta agtttcaaat        60
     aatcaaattt tcccgctctt ttacggttat gtagtgttga catatagcta ttaaaaatta       120
     catttagtat ggcggaaggc tcaacataac ctcaaaaatt attcagttca gtacagtcaa       180
     aaatggcaac agataaggtg catatccgac actgcattct ttacgaattc caacaaggaa       240
     aaaatgctgc aagagcatgc gaatcgattt gttcctttct cggcgaaggt gttgtatcgt       300
     acgatgtgtg tgcattttgg tttagacggt ttaaaagcgg cgatttcagt ctgagtgaca       360
     aagaacgtcc tggaggccct cggaagtgcg gcaacaatga tttggagcaa ctgctcgctg       420
     agaattcagc acaaacgcaa aaagagcttg cagagcagtt aggagtaacg caacaaacta       480
     tttccaaacg cctacacgag atggggaaga ttcagaaaga aggaaaatgg gttccgcatg       540
     aactcactga agccaacaaa aatcaacgag tggcagtgtg tctttctctt ctcaataagc       600
     agcgtagaaa gtctttcttg tggaaaattg ttacgggcga tgagaagtgg atactctatg       660
     acaatccgaa acgcagaaag tcatgggtaa atcccggcga accatcaaca tcggtcgcaa       720
     agccaaaaca cttcggaaag aagattctgc tctgcatttg gtgggatatg aagggcgtga       780
     tttattatga gctattaaaa ccgaatgaaa caattactgc ggaccgctac caacaccaat       840
     taatccgttt gagtcaagaa ttagaacgaa aacgcccgta tagtggcaaa ggagaacgtc       900
     ctgtgaaatt gttgcatgat aacgctaggc cacacattgc ttctacgaca aaagacatca       960
     taatgagtct tggctgggac gtcttgcagc acccggcgta ttcaccagac atcgctccta      1020
     ccgattacca cttgttccgg tcgatgcaac atgccttgtc cgatacgcac ttcaaatcag      1080
     tggatgagat ccgaaaatgg cttgacgact ttatcgtgtc caaagacaca acatttttcc      1140
     gacatggaat tcatcagctg cctgaaagat ggcttaaagt tatagaaaac aacggcgaat      1200
     actttgattg acaaatttgt tttactttct tttaaaataa accttgaatt tagctgaaaa      1260
     atttggatta ttcatttgta cacctaa                                          1287
//
ID   Mariner-1N1_Dro_DSer repbase;    DNA;    INV; 948 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-1N1_Dro_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-948
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1845-1845 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TA TSDs. 31-bp TIRs. It is an
CC   internally deleted derivative of Mariner-1_Dro.
XX
SQ   Sequence 948 BP; 276 A; 181 C; 206 G; 285 T; 0 other;
     caaggtgcgt tccaaagtaa acaggacttt ttgaatctag cgtcatctag tggcgccatc        60
     tatatgtcaa ctggtgcgtt agaatctgct atcctttatc gacttccagt aaaaatttca       120
     tgacatttca tctattggaa gtgaggttat tgcgttttaa gtgtcagtat gtttttgtca       180
     tcggtacgaa aatgagcttc gaacaaagag ccaacattaa attttgtttt aaaattggta       240
     aaacttttac cgcaacgttt caattgatga aacaagttta tggcgatgat tgcctatcca       300
     gtagcagagt gcacgagtgg tttcaaggtt ttcaaagtgg tcgtgaggac ataaatgacg       360
     atgagccaaa acccaaagaa tcgcgcctgg agaagtcaaa agtgaagaca atgctgattt       420
     gtttttatga ttccaagggt attgtccaca aagaatttgt tccacccggc caaaacgtta       480
     atgcggtatt ctaccttgga gttttgaagc gtttggtgcg ccgtattcga cgtgttcggc       540
     ccgaatatcg cgaagatgga agttggcgtt tgttgcacga taatgcgctg cctcatcgat       600
     cgactcttgt gtttgactat ttgaccaaaa atcacatttt aaccatcaac cactccccgt       660
     attcacctga tatggcactg tgcgacttct accttaatgg aaaaatgcat ttgcgatgaa       720
     aggaaagagt tatgcagacg taaaggccat ttaaaaggct tgcaccggca tactggcggc       780
     cataccgggc aacgagctaa aacactcgtt cgacatgctt ttggaccgtg caaaaagctg       840
     tattaaagca gaaggagact attttgaata aaataaattg attttgccga aaaaactatt       900
     tgttctattt ttttgttaaa agtcctgttt actttggaac gcaccttg                    948
//
ID   Mariner-1N1_RPr repbase;    DNA;    INV; 917 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-1N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-917
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3245-3245 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 917 BP; 281 A; 193 C; 207 G; 236 T; 0 other;
     cgagggtcgt ttgaaaagtc cgtgcaaagt cagagagata gcactactgg cgcgtatcga        60
     ggttatgttt agttagtagc atctcttgga agaacacaca ccaagtttca gccagatcgg       120
     tctatttctt tgtgtttggc attcgtttga atcgaggaag tcgagtgatt ttctcacgct       180
     tgaccaaaaa cgaaatcgtg tgaagtgttg caaggacggt ttgcagctgt tccagaagaa       240
     tccgcaggac tttaagcgtc gtttcgtcac tgtggatgaa acatggatac atcactacac       300
     tcctgagacc aaagaacaat ctaaacaatg ggttaccaag ggggaatctg cgccaaaaaa       360
     ggcgaagacc gttccttcgg ccggaaagat tatggcgact gtcttttggg attcgcaagg       420
     aataatcctc atcgactatc tggaaaaggg taaaactatt acaggtgcat attattcatc       480
     gttattggac cgtttgaaaa ccgagctgca agaaaaacgc ccacgattgg cccacaaaaa       540
     agtccttttc catcacgaca acgcaccagc tcacacctca gcagttgtgg tcgcaaaatt       600
     aatggaaata gggttccaac tcgtttcaca tcccccctat tctccagact tggctccctc       660
     ggactactat ttgttcccca atatgaagaa atggctggcg ggaaaaagat tttattcaaa       720
     cgaggaggtg attgcagaaa cgaatggcta tttttcagac ttggacaaat cctattattc       780
     ggaagggatc aacaaactag agcagcgttg gacgaagtgt ataagcctaa aaggagacta       840
     tgttgaaaaa taaaaaaggt ttaccccaaa aaattaagta gtttttattt ttgcacggac       900
     ttttcaaacg accctcg                                                      917
//
ID   Mariner-1N1_SIn repbase;    DNA;    INV; 866 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-1N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-866
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 390-390 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 866 BP; 279 A; 151 C; 149 G; 287 T; 0 other;
     cagggtgtcc cattttaaaa aatccaccca aataattctt caatgaagca ttttcagtaa        60
     aaatgtttca gacaaaagtt gtatggtttc aagggggtca taagatggtg tcattaattt       120
     gaccttgaat agttgcttga aggtcacgtg aaggacacct tcaatttttt taatgggact       180
     gcctactttt tattacatat tcttgtagct tatctcgaga cctttccaaa acactacaag       240
     aaagtttatt ttcgttgagt actttccgag ttgtgaggct tgaaagctac ggtgtactgt       300
     aactttcaag cgtcacaact cggaaagtac ttaacaaaaa taaactttct tgtagtgttt       360
     tggaaaagtc tcaaaataag ctacaagaat atgcaataaa agatacaata ttagagtatc       420
     ggtagttccc taattaaagg gtatcggtac ttccctaaca ttctatattt tttattgcat       480
     tttcttgtag tcgatttcga gagctttcca aaacactata aataagttta tttttgttaa       540
     ggactttccg agttatgacg cttgaaagtt acagtacacc gtagctttca agcctcacaa       600
     ctcggaaagt actcaacaaa aataaacttt cttgtagtgt tttggaaagg tctcaagata       660
     agctacaaga atatgtaata aaaagtaggc agtcccattt aaaaaattga aggtgtcctt       720
     cacgtgacct tcaagcaact attcaaggtc aaattaatga caccatctta tgtccccctc       780
     gaaaccatac aacttttgtc tgaaacattt ttgtctaaaa tgtttttttg agatatttgg       840
     gtggatcttt aaaatgggac accctg                                            866
//
ID   Mariner-1_AAe repbase;    DNA;    INV; 3500 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Mariner/Tc1 DNA transposon from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3500
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1286-1286 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(484..1059,1086..2114)
FT                 /product="Mariner-1_AAe_1p"
FT                 /translation="MEAKKENIQRALESVAGGTSLRAAAKMFNIRVTTLYD
FT                 RKKAVNRRDAAGKPTVLSPSEELEIVGWLEDMAAAGHPICEEILKINVAQY
FT                 AKQLGKSEAFRSGIPSRGWVLRFLKRHPTISKRTANPISKRRIVTPDEVRL
FT                 WFQEVERYLAKHDYLDILNHPDRIFNMDESAFEMAPNPRKKKVFAKRGIRI
FT                 VIHLFLFVAGTKNVQSIQGNSNRESYTVLMTGSASGVLVAPLVLFPYKERL
FT                 PRDVSQSIPKGWGVGRTESGWMKSEAFLDCLRNVFHPWLLKNNVKLPVIVF
FT                 VDGHRSHATYDTVNFCKSHGIILICLPPNSTHFIQPLDVSFFKPMKAAWDT
FT                 ALVKWRFDNGGAMISKPDFAPLLKQAIDSMNGIEQTLINGFRKCGLHPWNS
FT                 EAIDYASFPDPSAVHQSKQPNNIVSTTSTEPLNQSIPSTIFLRELNRRLSP
FT                 EVLETFEDQRRNLMWTGELEASHLFNLWRTIKDEVDGPPEYFEIDPALVGL
FT                 DITLDGEGSAVLNECAPNDVDCKKDGSGYLFIFVVRKSN"
XX
SQ   Sequence 3500 BP; 1160 A; 613 C; 703 G; 1024 T; 0 other;
     ctcaaattcc gaacagactc aaattccgaa caccttgtcg taattgttat atttataatg        60
     gatatagtat aataatatta agatattttg cattggggta atttccatac agtaagaatg       120
     attgtaacga gatttttatg catttacagc gcctactttt aaaatagtaa gcatttgtaa       180
     aaaagtgaca gcgcacaagt tatgaaaaag tgcacctgct agcaatttat gctcaaaccg       240
     gcttcgttac tatttcagtt atttcagtgt tgtttcgcga ttttgtttga tttgtttcgt       300
     actacaagat aactaaaggt aagaataatt gattgttgaa caacttaatg ccaattttgg       360
     gcaaaaatcc tacaaaaatc aataaaatat gtagtgttcg taatatgaat catgttctga       420
     agcttgattc aaatgtcgaa catagtgtaa gaatctttat ttcaggtgct tgcatcgtgt       480
     gaaatggaag ctaaaaaaga aaacattcaa cgagcgttgg aatctgtagc tggcggtaca       540
     tctctccgag cggcagctaa gatgttcaac atccgtgtaa caacgctgta tgatcggaaa       600
     aaagcagtca atcgtagaga tgccgctgga aaacccactg tattatcacc aagtgaggag       660
     ttggagattg ttggctggtt ggaggacatg gccgcagcag gtcatccgat atgcgaagag       720
     atcctcaaaa tcaatgtggc ccagtacgct aagcagttgg gaaaatcgga agcattccga       780
     tctggaatac cctcacgtgg ctgggttttg cgctttctaa aaaggcatcc aacgatttcg       840
     aagcgaactg caaatcccat ttcgaaaagg cggattgtca cgccggatga agttcgttta       900
     tggttccagg aagttgagcg gtatctcgca aagcacgatt acctggacat tctgaaccat       960
     cctgaccgca ttttcaatat ggatgaaagt gctttcgaaa tggccccaaa tcctcgcaag      1020
     aagaaagttt ttgctaagcg aggtatacgt attgttatat aatatattat tcaccggcta      1080
     tttaacatct ctttctcttt gttgcaggta cgaaaaacgt acagtccatt caaggaaatt      1140
     ccaaccgtga gtcatacacg gtactgatga ctggatctgc ttctggagta cttgtggccc      1200
     ctttagttct atttccgtac aaagaaaggc tgccgcgaga tgtttcccag agtatcccaa      1260
     aaggatgggg tgtcgggcgc actgagagtg gttggatgaa gtcggaagcg tttctagact      1320
     gcttgaggaa cgttttccat ccttggttgc tcaaaaataa tgtgaagctt cccgtcattg      1380
     tatttgtcga tggtcaccgt tcacatgcga cctacgatac agttaatttt tgtaaaagtc      1440
     atggtatcat tttgatctgt ttgcctccga attctaccca tttcatccaa ccacttgacg      1500
     tttcattttt taaaccaatg aaagctgctt gggacactgc actggtcaag tggcgattcg      1560
     acaacggagg agcaatgatt tcaaagccgg actttgctcc tcttttgaaa caagctattg      1620
     attcgatgaa cggcattgaa caaacattga tcaatggatt cagaaaatgt ggcctgcatc      1680
     cgtggaactc cgaggccatt gattatgcat cttttcctga tccatctgca gttcatcaaa      1740
     gcaaacagcc aaacaatatt gtatctacga cctctacgga accattaaac cagagcatac      1800
     cttcaacaat tttccttcgt gaactaaatc gtcggctttc acctgaagtt ttggaaactt      1860
     tcgaagacca gcggcgtaat ctcatgtgga ctggggagct tgaagcatcg catctcttta      1920
     atttatggag aaccatcaaa gatgaagtag acgggccacc ggagtacttt gaaatagatc      1980
     cagcattagt tggcctcgat attacccttg atggagaagg aagcgctgtt ttgaatgaat      2040
     gtgctcctaa tgatgttgat tgtaagaaag acgggagtgg ttatctgttc atttttgtag      2100
     taaggaaatc aaattgatat tttcagatca aaatgaagat gcgaactttt ttgagcatga      2160
     acgccagacc tgtgaagtta tacaattgga gaatgacgaa catatgtttg aagagttgga      2220
     ttttgagcgt aattgaaaga aattaaaatt aaatgttttt gtttttaatg taaacaatac      2280
     tttaattaaa ggtgatcgct ctgatacggt agagaacatt tctctattac tgggctgttc      2340
     cgcagaaaaa gacagggctg tagagcgtaa ctcagaagct caatcttcta tcaagaaaag      2400
     gaaacgatgc gcaccagcag ttgcgacaag tgaggcttgg gaagagtttt ataaagaaga      2460
     acaagaaata aaaaaacaaa ttcaacttgc aaaacaaaaa cgacaagaag aacggaaaca      2520
     aaaatcattg gaaaaggaag aacagaagaa aataaaagcc gcgttgaggg tactgaagca      2580
     gcatgaaaga gatgaactga aagaacagaa gaagaaagaa agagatgcag taagaattga      2640
     aaaagctaaa gaacgcctgg agaaaatgaa gaacaaaatg aagaaacaag caaaaactat      2700
     aaattaagac aatgcaaaaa ctatagacaa tttaaacttt actgtaattt catctccacg      2760
     ataactgttt cattattatt tcatttacta ttgtagttat aattcgactt aataaatata      2820
     tgtatgatac actgagcgca aaatcaacat atttttcttc aatgcactct ccatgttaaa      2880
     catttttaaa accatttttg agtgaagggt ttgatttcaa ttattgtatt gctggtcacc      2940
     tcgatagttg agcaaaaaaa aaaaattgtc ggtgattgta gcacagtcct ttgctacata      3000
     ttttagcatg tgtcatctta ttggatctcc aaatagtcga gccaattttg ctgaataatg      3060
     gtgcgtctgg ttgttggaat cccggcataa tcaaattcag tctgtaacat aattaaaaat      3120
     taaatcttat ttatttcctg ttcaacaacc tggaacactc aaacaaactt ttccttttcc      3180
     atttgaaaat atgtgagtga gaaacagcca tattgaaaga agcaaaagga tttttccaag      3240
     aacaagccta taatattcga ttgattttca acgactcgtt taaataaggt atttttcaaa      3300
     tgttaatcgc atcaatgatt taaattgtac agcataaaat caatagtgca aattattata      3360
     ttatttcata tattctgtag tttgtagctc aaatgagcaa aattatgcgt cattcgatca      3420
     caattaaaac aaaaataatg aaacaaattt attcaattca ccatgttcgg aatttgagac      3480
     aaaagtgttc ggaatttgag                                                  3500
//
ID   Mariner-1_ACe repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   29-MAR-2012 (Rel. 19.03, Created)
DT   29-MAR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1290
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 508-508 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-1_ACe_1p"
FT                 /translation="MENFEEHIRHILFYYFKKGKKATEAREKLRRVYGRNV
FT                 VKKRQCQNWFARFRDGDFSVKDAHRSGRPSKIDDDEMKALVQANKHSTVRE
FT                 LATALKVSVGSVHGHLKSLGFVKKLDVWVPHELKEIHLTNRMSVCDQLIKR
FT                 EENDPFLKRMITGDEKWIVYNNVSRKRSWSRRGEAPERQAKAEIHQKKVML
FT                 SMWWDWKGPVFYELLPKNKTINSDVYCEQLQKLSDAIAQKRPELINRKGVV
FT                 FHHDNARPHTSLVTRQKLLQHGWDVLPHPPYSPDLAPSDFHLFRSLQNSLN
FT                 GKTFASEDLIKQHLDKFLAEKDGKFYERGIMKLPGRWQKVIEQNGQYIID"
XX
SQ   Sequence 1290 BP; 403 A; 258 C; 304 G; 325 T; 0 other;
     ttgggttgtt caaaaagtca ttgcgttttt tccaatagat ggcgttgtcc acgtttattt        60
     gtatgcgagc gtgacatgaa tgtcaaatgt ttacgcgcgt tttgttgttg acactcaacc       120
     taaaaaccaa aaaaaaagtt gacgcgattc ggtcgagttt tgtgcttgca attgtggttc       180
     gaacatggag aattttgaag agcatattcg ccatattctg ttttattact tcaaaaaagg       240
     gaagaaagca actgaagcaa gggaaaagtt gcgtcgagtt tacggcagaa atgtcgtcaa       300
     aaaacgccag tgccagaact ggttcgcccg attccgtgat ggtgattttt cagtcaaaga       360
     cgctcatcgc tccggtaggc cttccaagat tgacgacgat gaaatgaaag cattggtgca       420
     agcaaataag cattcaacgg ttcgggagct tgctaccgct ctaaaagtgt ccgttggaag       480
     tgttcatggc catttgaaat cgctaggctt cgtaaagaag ctcgatgttt gggtaccgca       540
     tgagttgaaa gaaattcatc tgacgaatcg catgagcgtc tgcgatcaac tcatcaaacg       600
     cgaagaaaac gatccgttct tgaagcgtat gatcacgggc gacgaaaaat ggattgttta       660
     caacaatgtc agccgaaaaa gaagttggag taggcgaggt gaagcaccgg aaaggcaagc       720
     aaaggcggag atccaccaaa agaaggtaat gctgtcaatg tggtgggatt ggaagggacc       780
     agtcttctat gagctacttc caaagaacaa aacgattaat tccgatgtct actgtgagca       840
     gctgcagaaa ttaagtgatg ccatcgcaca gaaacgtccc gagctaatca atcgtaaggg       900
     tgtggtgttt caccacgaca atgcgagacc acacacaagt ttggtcactc ggcaaaaatt       960
     gttgcaacat ggttgggatg tgttaccaca tccaccgtat agcccagacc ttgcaccatc      1020
     agacttccat ctctttcgct ccttgcaaaa ctccttgaat ggtaaaacgt ttgcttctga      1080
     agacctcatc aaacagcacc tagacaagtt tctcgcagag aaggatggga agttttatga      1140
     acgtggtatt atgaagttgc ccgggagatg gcagaaggtc atcgaacaaa acggccaata      1200
     tatcattgat taatgttcat tacgtatatt aaataaacac acctgaaaat caaatgaaaa      1260
     aaacgcaatg actttttgaa caacccaata                                       1290
//
ID   Mariner-1_AEc repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1316
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 543-543 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           151..1233
FT                 /product="Mariner-1_AEc_1p"
FT                 /translation="MTVHVKQDFGRGRNFNMEQRAVIKFNAKLGKSASETF
FT                 RSMQQVYGSQCLGRTAVFEWHKRFLEGRETLEDDKKSGRPILVRTPEMIEK
FT                 VRDFVANDRNASLKMMEEALNISRETIRTILHEDLGKTKVCAKFVPHTLRS
FT                 DQKSARIDYSRDIVAAAENNPNFLKSIVTGDETWCFQYDPETKRQSAEWKS
FT                 KNSPQAKKVRKVPSKIKTMLITFFDSKGIIHKEFVPTGQTITGAYYLEVLK
FT                 RLMGRIHRIRPEYRDPENWSLLHDNAPSHTSLIVRQCLARNRVSVLNHPPY
FT                 SPDLAPCDFSLFPKLKLKLKGRFFDDIPTIQSASTQALEAIPQTELEHAFE
FT                 SLLNRCNKCIEARGEYFE"
XX
SQ   Sequence 1316 BP; 442 A; 251 C; 260 G; 363 T; 0 other;
     tacacagtgc gacaaatatg ttcccggaca cgaaccacat ctcagcaacc agtggcgaca        60
     tctgtgcgtt caaacatgca ttttaaaggt tgaacatttt gctatcatct gtcaaagttt       120
     cattcatttt ggttgacata taacgaagat atgacagttc atgttaaaca agattttggt       180
     cgaggtagaa attttaatat ggaacaaaga gcagtgatta aatttaacgc aaaacttggt       240
     aaaagtgcat cagaaacatt ccgatcgatg caacaagttt acggcagtca atgtctaggt       300
     cgtacagctg tttttgagtg gcataagcgt tttttggaag gcagagagac ccttgaagat       360
     gacaaaaaat caggacggcc aattttggtt cgaacacccg aaatgatcga aaaagtacgt       420
     gattttgttg caaacgatcg caatgcatca ctaaaaatga tggaggaggc tttaaatatc       480
     agtagagaaa cgattcgaac catattacat gaagatttgg gtaaaacgaa ggtttgtgcg       540
     aagtttgttc cacacacatt aagaagcgat caaaaatcag cgagaatcga ttattccaga       600
     gacatcgttg cagccgcaga aaataatcca aacttcctaa aatcaattgt tacgggtgat       660
     gaaacatggt gctttcaata tgatccagaa actaagcgtc aaagtgcgga atggaagtca       720
     aaaaattcac cacaagcaaa aaaagtacga aaagttccat caaaaatcaa gacaatgctc       780
     atcacattct ttgatagcaa aggtattatc cacaaagagt ttgttccaac tggccaaaca       840
     attactggtg catattatct cgaagtttta aagcgattga tgggcagaat tcatcgtatt       900
     cgccccgaat atcgtgatcc agaaaattgg tctttgttgc atgataatgc accgagtcac       960
     acttcattga ttgtccgtca atgtttggct cgaaatcgtg tctctgtgtt aaaccatcca      1020
     ccgtattcac ctgatttggc cccctgcgac ttctcattat tcccaaaatt gaaattgaaa      1080
     ttgaaaggac gcttttttga tgacattccg accatccaat cagcttctac acaggcacta      1140
     gaggcaattc cgcaaactga gctagaacat gcatttgaat cactattgaa tcgctgtaac      1200
     aagtgtattg aagccagagg agaatatttt gaataataaa accaaaaaat atgcatattg      1260
     ttgtttcaat tatgattttc aggccctgtc cgggaacata tttgtcgcac tgtgta          1316
//
ID   Mariner-1_AMel repbase;    DNA;    INV; 1305 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 17.09, Created)
DT   31-OCT-2005 (Rel. 17.09, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from Apis mellifera (a consensus).
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   Interspersed repeat; Mariner-1_AMel.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   1-1305
RA   Bao W. and Jurka J.;
RT   "Mariner-type DNA transposon from honeybee.";
RL   Repbase Reports 12(9), 1903-1903 (2012).
XX
DR   [1] (Consensus)
XX
CC   Around 7 full-length copies,  ~92% similar to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..1197
FT                 /product="Mariner-1_AMel_1p"
FT                 /translation="MSILKQCVRGVGENPGTSIRRRGQELQISRSSLQRIL
FT                 TKDLCLHAYKIQLTQQLKPNDHEQRREFVEWIINHQKVDAGFSSKIILSDE
FT                 AHFHLDGFVNRQNCRVWGSENPRVISEKQMHPQRVTVWCGFWAGGIIGPYF
FT                 FENEAGQAATVNGARYRDMITQFFLPKLDDIDVANMWFQQDDATCHTANET
FT                 IQLLHETFPGRVLSRFGDQNWPPRSCDLTPLDFFLWGYLKSKVYVNNPTTT
FT                 RALQEEIKRCINEIQPQLCRKVMKNFDERVRMCQQSRGGHLPDVLFHK"
XX
SQ   Sequence 1305 BP; 424 A; 247 C; 269 G; 365 T; 0 other;
     aagggtgtcc caaaattaac gcaagatttg aatttgccgc catttttgca ttaagttgtt        60
     ggcaaccctg aaaaaagaac agtttgacag ctgagagttt agggttagta aaaatggagc       120
     gttatacgat acaacaacgt gtcttcatta ttgaacaata ttttaaaaat aatgaaagtt       180
     tggcggccgc agttcgaaaa ttttatacaa aatatggtaa aaatagtgtt ttaacctcgt       240
     caactgtgaa aagattaatt gaaaaattcg tggagactgg atcagttgga gacgctaaac       300
     acaccggtcg tccaaaaaca agccgttcaa atgtcaatat tgaagcagtg cgtgagaggt       360
     gttggtgaaa acccaggaac atcaattcgg cgtcgtggac aagaattgca aatttcaaga       420
     agctctctac agcgtatact cacaaaagat ctgtgtcttc atgcttacaa aattcaatta       480
     acacaacaac tgaagcctaa tgaccatgaa cagcgaagag agttcgtgga atggattatt       540
     aatcatcaaa aagtggatgc tggtttttcg agcaaaataa tcctaagcga tgaagcacat       600
     tttcacctcg atggctttgt taatcgccaa aattgccgtg tttggggttc ggagaaccca       660
     cgtgtgatta gcgaaaaaca aatgcaccca caacgtgtca ctgtttggtg cggattttgg       720
     gcaggaggca tcatcggacc atactttttt gagaatgagg ctggtcaagc agcaactgtt       780
     aatggtgctc gatatcgcga catgataaca cagttctttc tgccgaaatt ggatgatatt       840
     gatgtggcca atatgtggtt tcaacaagac gatgctacat gccatacagc caatgaaaca       900
     attcaattac tgcatgagac atttcctggt cgtgtactct ctcgtttcgg tgatcagaat       960
     tggcccccta gatcatgtga tttaacacca ttagatttct tcttatgggg ttatttgaag      1020
     tcaaaggtct atgtcaacaa tcccacaacc acacgtgcat tacaagagga aattaaacgc      1080
     tgcatcaacg aaattcagcc acaattatgc agaaaggtca tgaaaaattt cgacgaaagg      1140
     gtgcgtatgt gccagcaaag ccgtggaggc catttgcccg atgtgttatt ccataaataa      1200
     ccctatccta tgtactttat gattcactta aaaaataaat atctaaagac taaaaactct      1260
     cttttatatt taattcaaat cttgcgttaa ttttgggaca ccctt                      1305
//
ID   Mariner-1_AP repbase;    DNA;    INV; 2330 BP.
XX
AC   Contig65588;
XX
DT   07-MAR-2008 (Rel. 13.03, Created)
DT   17-MAR-2008 (Rel. 15.12, Last updated, Version 2)
XX
DE   Mariner-type transposable element.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_AP.
XX
NM   Mariner-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2330
RA   Jurka J.;
RT   "Mariner families from Acyrthosiphon pisum.";
RL   Repbase Reports 8(3), 340-340 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           504..1805
FT                 /product="Mariner-1_AP_1p"
FT                 /translation="MIVNLFKSKMIQQPTLKVKEVAMIISKELGIGKNTIQ
FT                 STIAEYKNKKTVSSPNKSKIRATYKQKVDDFERDAIRRKVHEFWFRKQLPT
FT                 LDKILTAVNEDPDLNTYKRSTLHLLIHDLNFVYVKRGRNSALIERDDIVLW
FT                 RTKYIEDIRKYRAQRRTIYYLDETWVNAGDCNDRIWQDNTVTSHRDAFLSG
FT                 LSTGAPNPTAKGKRLIVVHIGSNEGFVDGGLLVFESKKGSSDYHEEMNGDV
FT                 FFDWLKGVIPLLKDNSVIVMDNAPYHSVKVEKCPTLGWKKAEIESWLEEKG
FT                 EPFQRPINKVGLMEIVKRIKPQFNKYVVDEYVKTKNMTVLRTPPYHCELNP
FT                 IELAWSSVKRYVKSNNTTFKLPDVQKHLIDGVNQCTPEMWENFVKHVIQIE
FT                 DRFWNVDMTVDDVMDDDNLHVMTITGDTSDSDDLGCVALE"
XX
SQ   Sequence 2330 BP; 758 A; 407 C; 481 G; 684 T; 0 other;
     tatactctgt ccagcgagag aacgggccgc gcgccgacca aaatcggccc gttttcgcgc        60
     atccccgagc gtacccagcc cagtgtgctc acaacgacgg cccaccgacc gatgtcgcgc       120
     tccgacgacc gacgtcgctt tccgacgacc ggcggcacgt gtccgacgat tccagttgat       180
     gctcgtagta cattcctgat tccagcgcga agtgtgttta ctatttatta tacgtaactc       240
     aagtgaaaat tatatctttt tttcgtacga ataatataat tttaaaatga gtgatgagcg       300
     accagtttct agtacaccat taaaggtgaa ccctagagga aaagtaagtg tggataaatt       360
     ttaattgttt ttaatttgga aaaccggtac taggcccctt aatatattac attttgtaat       420
     tttttaaaga atattatttg atttgtaatc aatatatttt ttttgtcttc atttttcagt       480
     tcgtcggaag tcgtcaaaaa ctgatgattg taaatttgtt taaatcaaaa atgatacaac       540
     agccaacgtt aaaggttaaa gaagtagcga tgataatttc aaaagaattg ggtattggta       600
     aaaatacaat ccagtcaaca attgctgaat acaaaaacaa aaaaactgtg agttcgccaa       660
     ataaatcaaa aattcgagcg acatataaac aaaaagttga tgattttgaa cgtgacgcga       720
     tacggaggaa ggtgcacgag ttttggttcc gaaaacagtt acctacactg gataaaattt       780
     taacagccgt taacgaagac ccagacttaa acacatacaa aaggtctact ctacatttac       840
     taatacatga cttaaatttt gtatacgtca aacgtggccg taacagcgct ctcatagaga       900
     gagatgatat tgtgttatgg cgcacaaaat atattgaaga tatacgtaaa taccgggcac       960
     aaagaagaac gatatactac ctggacgaga cctgggtcaa cgcaggtgac tgtaacgaca      1020
     gaatatggca ggataatact gttacgtccc acagagatgc ctttttgagc ggtctttcta      1080
     ctggcgcacc gaatcctaca gcaaaaggga aacgacttat tgttgttcat attggatcaa      1140
     acgagggttt tgtcgacggt ggcttattgg tattcgaatc caaaaaaggt tcttcagatt      1200
     atcacgaaga aatgaatggt gatgtttttt tcgactggtt gaaaggcgtc attccattac      1260
     ttaaagacaa ttctgtcata gttatggaca atgcgcctta tcactcagtt aaagtagaaa      1320
     aatgcccaac attaggatgg aaaaaggcgg aaattgaaag ttggcttgaa gaaaagggtg      1380
     aaccattcca aaggccgatc aacaaggtag gactaatgga aatcgtaaag cgtattaaac      1440
     cgcagttcaa caaatacgtt gttgacgaat acgtcaaaac taaaaatatg acggtattac      1500
     ggacgccacc gtatcattgt gagttgaacc caattgaact tgcgtggtcg tccgtaaaaa      1560
     ggtatgtgaa gtcaaacaat accacattca aacttccgga cgtacaaaaa catttgattg      1620
     atggtgttaa tcaatgcact cccgaaatgt gggagaattt tgtcaaacac gtcatccaaa      1680
     tagaagacag attttggaat gtggacatga ccgtcgatga tgtgatggat gacgacaatt      1740
     tacatgtaat gacgatcact ggggacacgt ccgattcaga tgaccttgga tgtgtagcat      1800
     tagaataaat atattgttta tacaaatgtt taattgtcat gaatttttat tatgtatatg      1860
     tattttgtat tttttttttg ttttttttta attgttatga caatggttat taacctactt      1920
     ttaatgtatt ttgtattatg tttattgcat atgaaattaa ttgttaaagt tgactataaa      1980
     aaaaaatatt aataaaatat tttacgttta ttttatgaca aaggtattat aataacgtgt      2040
     ttttactaca tttatttgtc gaaaaatgta gaaaaaacta agtgttcata ttaaaaaagt      2100
     tgtattatta aaattacgtt gcatacaata attaatgcgg taagccggta aaatattgca      2160
     cgtgttatac gggcggcaat agtcaacagg tggttgattc ccgatcatcg gcgacggttc      2220
     gatcgaccgt cttcggcacg ccgagagagg gggaaatggg gcctcggagc tcgctcgctc      2280
     gtcagtctgc atgcgcagaa ccggcccgtt ctctcgctgg acagagtata                 2330
//
ID   Mariner-1_BM repbase;    DNA;    INV; 2386 BP.
XX
AC   .
XX
DT   25-APR-2010 (Rel. 15.07, Created)
DT   25-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2386
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 936-936 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           861..1859
FT                 /product="Mariner-1_BM_1p"
FT                 /translation="MSESNEDIRYILKFYYKKGKKATQAVKKNCDVYGPSA
FT                 VSVRVAQIWFKRFQSGNFDVKNARRSGRPITDKIDAIFEKVGQDRHISSYD
FT                 VTEELGIDHKIVMAHLKKTGYTKKLTERNLMNRVLICDSLLRRNETEPFLK
FT                 KLITGDEKWITYDKNVRERLWSKAGQASQTLAKPGLTRNKVMLCVWWDWKG
FT                 IIHYELLPPGRTIDSELYCEQLMRLKQEVERKRPELINRRGVVFHHDNARP
FT                 HTSLATQQKLRELGWEVLMHPPYSPDLAPSDFYLFRSLQNSLGSVRLTSRE
FT                 DCQNQLSRYFDQKPQNFYSNGIMSLPTRWQKVIEQNGTDIL"
XX
SQ   Sequence 2386 BP; 755 A; 440 C; 515 G; 676 T; 0 other;
     cgtaggatag accattctaa ccggcgccat ctaggcgggc ttcggacagc ctgccgaccg        60
     agagggctgg tggtcgtggc gccgacgacc gccagtccgg cgtcccgagg gggagggtga       120
     tgggagagat gtgctccgca ctaaacgctt cactttcccc cctttgcctt ttcatgagct       180
     ctgtctcatg cgaggtttgg atgctggttg ttgagcgaca ggaggtttta gtcggttcga       240
     ctccgacatg ccccgccctc catccccagt gaagggcgga agtccggcga tttcctcctg       300
     acaaaaaaaa aacgtgtggc actcgggaac tgcggcggta aagctattgc atagcatttt       360
     ttatcaactt atgacattat aattagacaa tgataattta atattaaaac aataataaaa       420
     caagaccacg ctatattaaa ccttaataaa ggcaaaacct taactgtccc cttcacactc       480
     ataagctaaa ccgcgcgaga gagagatggg cagacttttc atgatgcgca tgcagtgtga       540
     cgtcacgcca cgcgcttatt cacaaacact acacaagcgc aacgtgtgaa tgtgttgaac       600
     gcgagctaca tggtaggcgg agtgagggat gttaggtttt tttcgttacg gaatttcatg       660
     attcggtcgc cgcgctcaag gcccgcgata aaagctatgc aatagcttaa aaatgtatga       720
     acttgtaata aaatctcttt ggctatacta tttgtatctg gctggttttg gtatcattaa       780
     aagtttaaat tcgaaagaag ataattccaa attaaaatta ggaagatgtg tgatttttat       840
     ttatttttcg tactgtcaag atgagtgaat ctaatgaaga tattcgatac attttaaaat       900
     tttactacaa aaaaggtaaa aaagcaacgc aagccgtgaa aaaaaattgc gatgtttatg       960
     gacctagtgc agtgtctgtg agagtagcac aaatttggtt taagcgtttt caatccggaa      1020
     attttgatgt caaaaatgca cgtcgctctg gtcgccctat tacggataaa atcgatgcca      1080
     tttttgaaaa agtggggcaa gatcggcata tcagtagtta cgacgtaact gaagaactgg      1140
     gaattgacca caaaatagtt atggcgcatt tgaaaaaaac tgggtacaca aaaaagctca      1200
     ctgaaagaaa cctaatgaac cgtgtactca tttgtgattc tttattacga cgtaatgaaa      1260
     ccgaaccatt tttgaagaag ctgataactg gtgatgaaaa gtggatcacg tacgacaaga      1320
     acgtacgaga aaggttgtgg tcaaaggccg gtcaggcttc acagactctg gcgaaacccg      1380
     ggttaactcg caacaaggtg atgctgtgtg tgtggtggga ttggaagggc attatacatt      1440
     atgagctgtt accaccaggc aggaccatcg attctgaact ctactgcgaa caactgatga      1500
     gattaaagca agaagttgag agaaagcggc cggaattaat caacagaagg ggtgtggttt      1560
     ttcatcacga taacgctaga cctcacacat ctttagccac tcagcaaaaa ttaagagagc      1620
     ttggctggga ggtgttaatg catccgccgt atagtcctga ccttgcacct tcagatttct      1680
     acctgtttcg gtctcttcag aattctttag gcagtgtcag gttaacatca cgagaggact      1740
     gccaaaacca attgtcgcgg tattttgatc agaagcccca aaatttctat agcaatggga      1800
     tcatgtccct acctacaaga tggcaaaaag ttatcgaaca aaatggtacc gacatacttt      1860
     agttaaatgt gaataaacta tattaaaaaa tgttgtgaat tttcttaaaa aatgcgaaga      1920
     aactttttcc ccaacctatt attatataga aataaaatag taaacaatgt ttacaataag      1980
     tgagctgttt aggcttacta tactatttga cattggacgg taatgggtaa attgtaaaaa      2040
     ataataatct aagacaagtt tttgaacaat aattatatac gcatttccat tttatataaa      2100
     aattatgatt cttacatcag taatttctta taaaatgcta ggaaaatgct gtaaaatgcc      2160
     cttatgttaa aaacaagaaa gaaagtaaag aaaacctcaa tttgtgttag tttacgtatg      2220
     tgtaatattt taaaactctg catggtagtt ttttttctaa tgtttaaaat aatttctggt      2280
     gcaatgtaat taaggtaaaa ttgctctaat tttttaacta tcatcgatca tgttccgcag      2340
     aaacttgtta caacttgatt gcgtacggtg tgtgggctat cctacg                     2386
//
ID   Mariner-1_BTe repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   29-JAN-2011 (Rel. 16.02, Created)
DT   29-JAN-2011 (Rel. 16.02, Last updated, Version 2)
XX
DE   Mariner-type sequence: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_BTe.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the buff-tailed bumblebee.";
RL   Direct Submission to Repbase Update (31-MAY-2004).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1290 BP; 419 A; 240 C; 247 G; 384 T; 0 other;
     tattgggttg gcaactaagt gattgcggat tttgtcaata ggtggtctta gcacattctt        60
     ttgttttgtc aacgtgttca aagcacctaa cctatattgt tttcttgttg tttggacttc       120
     cacctttaat ttagtaaaaa aattgtatcg attagttatt tagtttcgtt tttatcccaa       180
     tttaaaaatg gaagaacaag acgcgcattt cagacatatt ttattgtatt atttccgaaa       240
     aggcaagaac gcatcgcaag cacacaagaa gttatgtgcc gtatatggga atgaagcctt       300
     gaaagaaagg cagtgtcaaa attggtttgc caaatttcgt tctggtgatt tttcactgaa       360
     aaatgctcaa cgatctggcc gtccagttga agttgatgag acccatatca aggccattat       420
     cgattcagat cgtcatagca caacgcgtga gattgcagag aagctcgatg tatcgcatac       480
     atgcattaaa aaaaattaaa acagcttggc tatgtcaaga aactcgattt atgggtccct       540
     catcagctta aggaaattca tttgacgcaa cgcattagca tctgcgattc gcttctgaaa       600
     cgcaacgaaa ttgatccatt tctgaaacga ctgattactg gcgaccaaaa gtggatagtt       660
     tataacaacg ttaatcggaa aagatcgtgg gtgatgcaag atgaaccagc ccagacgaca       720
     ccaaaagctg agattcacca aaaaagatta tgctgtcagt ttggtgggat tataaaggaa       780
     ttctgtactt tgaactttta ccaagaaacc aaacgattaa ttcaaacgtg tacgttcaac       840
     aactcgccaa actgagcgat gcagttcaag aaaagcggcc agaattggca aatcgtaagg       900
     gtgttgtttt ccagcatgat aatgcaaagc cccacacatc tttggtcact cgccaaaaat       960
     tattggaact aggttgggat gtgttgtcac atccaccata tagccctgac cttgcgcctt      1020
     cagattacca tttatttcgt tccatgcaga actccttaaa tggtaaaatt tttaatgacg      1080
     ctgatgatgt aaaatcacat ttaattcagt tttttgctgg caaaaatcag aagttttatg      1140
     aacatggaat tatgacactg cctgaaagat ggcaaaaggt catcgacaaa aacggacaat      1200
     acctaattga ataaagttat atttttaagc aaaaattttg aattttcctt cttatttaaa      1260
     atacgcaatc acttagttgc caacccaata                                       1290
//
ID   Mariner-1_CFl repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 19.04, Created)
DT   26-DEC-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 826-826 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-1_CFl_1p"
FT                 /translation="MSKFEPKKHHFREVLIFCFHLKKSAAEAHRMLVEAYG
FT                 ESAPTDKSCREWFRRFKSDDFSVDDKPRPGQPKKFEDEELQALIDEDSCQS
FT                 QHELAQLLNVDRSTISVRLAAMGKIYKEGRWVPYELKERDIERRKAMSEIL
FT                 LARQKRKGFLHRIVTGDEKWIYFDNPKRRKSICDPGKPSTSTPKRNIHGKK
FT                 VMLCIWWDQKGVVHHELLKQSQTITAELYQQQLIRLNNALKNKRPEYAKRH
FT                 DKVIFQHDNARPHVGKIVKATLEALGWDVLPHPPYSPDIAPSDYHLFRSMA
FT                 HGLSDQHFNNYEEIEKWLNEWIASKDESFFHHGIQQLPYRWDKIIANDGKY
FT                 FD"
XX
SQ   Sequence 1292 BP; 416 A; 256 C; 282 G; 338 T; 0 other;
     tattaggtgt gtgaattaat tcggtccatc tggcggtcaa ttgctgtact atgtaatttt        60
     ctaacctcta atgtctgcaa aaggctttat ggtttagtat tgacatctgg caataatatt       120
     cagttgataa acgtttgagt ttgtaacaat tacatcgtgt ttatctgatt cgaaaatgtc       180
     gaaattcgag cccaaaaagc atcatttccg ggaagttctc attttctgtt ttcatttgaa       240
     gaaatcagcc gctgaagctc atcgaatgct cgtagaagct tatggtgaaa gtgctcccac       300
     cgataaatca tgcagagaat ggtttcgacg tttcaaaagt gatgatttca gtgtcgatga       360
     caaacctcgt ccaggtcagc cgaagaagtt cgaggacgag gaattgcagg cgctaatcga       420
     tgaagattca tgtcaatcgc aacatgagct cgcacaattg ttgaatgttg atcgatcaac       480
     aatttctgtg cgtttggcag ccatgggaaa gatttacaaa gaaggaagat gggtgccata       540
     cgaactgaaa gaaagagaca tcgagaggcg aaaagccatg tctgaaatct tgcttgccag       600
     gcaaaaaaga aaaggttttt tgcatcgtat tgtgactgga gacgaaaagt ggatatattt       660
     cgataatccc aaacgaagga aatccatttg cgacccagga aaaccatcca catcgacacc       720
     aaagcggaat attcacggca agaaagtaat gctctgtata tggtgggacc agaagggtgt       780
     agtgcatcat gagctattaa aacagagcca aaccatcact gccgaacttt accaacaaca       840
     attgatccgt ttaaacaacg cattgaagaa taagcggccg gaatatgcaa agagacacga       900
     caaagtgatc ttccagcacg ataacgctcg gccacatgtt ggaaagattg tgaaggccac       960
     cttggaagca cttggctggg acgttttacc tcacccgccg tattcaccag acattgctcc      1020
     atccgattat cacttgttca gatcgatggc acacgggctt tcggaccagc acttcaacaa      1080
     ttatgaagaa atagagaaat ggctcaatga atggatcgct tcgaaggacg agtcgttttt      1140
     ccatcacgga atacaacaac tgccatacag atgggataaa ataatagcaa acgatggcaa      1200
     atactttgat tagtgtactt tttcatgttt tttcacacta aagtcttttt ttggaagaaa      1260
     aaaacggacc gaattaattc acacacctaa ta                                    1292
//
ID   Mariner-1_CiLe repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   14-NOV-2019 (Rel. 25.01, Created)
DT   14-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   DNA transposon from the bed bug genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_CiLe.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-1288
RA   Kojima K.K.;
RT   "DNA transposons from the bed bug genome.";
RL   Repbase Reports 20(1), 46-46 (2020).
XX
DR   [1] (Consensus)
XX
CC   100% identical to consensus. TA TSDs. 31-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..1207
FT                 /product="Mariner-1_CiLe_1p"
FT                 /note="transposase."
FT                 /translation="MQDFKFSLKKIYIKYSVYVYRITHLYECQHLLILFQM
FT                 ILFVYLCSIPLLGNNSVILIMSKREFRTIFFYEFKLGRSGAQTARNINQVW
FT                 GEGCVNECTVQRWFKKFREGDFSLEDEEGRGRPSSLNDDVLRSVVEENPKT
FT                 TVRELAEQLKVSKTTVADHLKAIGKVKKLENWVPHSLNDRQKNQRFDVCAS
FT                 LLCRNKNDPFLARIVTCDEKWILYDNTRRSGQWLDKGEAPIHFPKPPTHQK
FT                 KVMVTVWWASFGLIHYSFLNPGETINAESYCNQINTMHQKLAVMKPSLVNR
FT                 KGPILLHDNARPHVSRVTSQKLLELGYETLPHPPYSPDLSPTDYHFFRHLD
FT                 HYLQHIIFKNQTELENAFIDFINSKNSEFYSDGINKLPTRWEKCIESMGNY
FT                 FD"
XX
SQ   Sequence 1288 BP; 412 A; 260 C; 242 G; 374 T; 0 other;
     tcgggttgtc cggaaaataa tgcaggattt taagttttca ttaaaaaaaa tctatataaa        60
     atattctgtt tacgtttaca ggattactca tttgtatgaa tgtcaacact tattaatcct       120
     cttccaaatg atattgtttg tttacctctg tagcattccg ctacttggaa ataattcagt       180
     catccttata atgtcaaagc gagaatttcg tacgattttc ttttacgagt ttaaactcgg       240
     ccgaagcgga gcccaaacgg ctagaaacat taaccaagtc tggggcgagg gttgtgttaa       300
     tgagtgcact gtgcaaaggt ggtttaaaaa atttcgggag ggagatttca gccttgaaga       360
     tgaagaaggt cgtggaaggc cttcctctct taatgatgat gttctgcgat cagtggtgga       420
     agaaaacccc aaaacaactg ttcgagaact tgcagagcaa ctcaaagtca gtaaaacgac       480
     cgtcgctgac cacctcaagg cgattggaaa agtgaaaaaa ctcgaaaatt gggttccaca       540
     ctcattaaac gatcgccaaa aaaatcagcg ctttgatgtt tgtgcatcac ttctttgtcg       600
     aaacaaaaat gacccatttc tggccagaat tgttacatgt gacgaaaagt ggattctcta       660
     cgataacact agacgttctg gacagtggct cgacaaagga gaagctccaa tacattttcc       720
     aaagccccca actcatcaaa aaaaggtaat ggttacggta tggtgggctt catttggttt       780
     aatacactac agcttcttaa atcctggcga aaccatcaat gctgaatcat actgtaacca       840
     aattaatacc atgcatcaga aattggcagt aatgaagccc tctttggtca atcggaaagg       900
     gcccattttg ttgcatgaca acgctcgacc acatgtgtca cgtgtaacgt cacaaaaatt       960
     attggagctt ggctatgaaa ctttgcctca cccaccctac tctccggacc tctcgcctac      1020
     tgactaccat ttttttagac acctggacca ctacttacaa cacataatat tcaaaaatca      1080
     aacggaactg gaaaatgcat ttattgactt tatcaattct aaaaattctg aattctactc      1140
     agacggaatt aataagttac caacacgttg ggagaaatgt attgagagta tgggaaatta      1200
     ttttgattaa agaacattgc tttaaagtaa ctagtttctt tttttttgtt taataccaaa      1260
     atcctgcatt attttccgga caacccaa                                         1288
//
ID   Mariner-1_CoFl repbase;    DNA;    INV; 938 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-938
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2111-2111 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. 31-bp TIRs.
XX
SQ   Sequence 938 BP; 317 A; 161 C; 191 G; 269 T; 0 other;
     cgaggtgtgt tcaaaaagta acgagaattt ttaaatttcg cgggtttgga gagtccgcct        60
     gtataaaatt ttttttttat tatgttggta cacatgcccc tgaagtacga taaaattttc       120
     agcaatattc attgcttact ttttaagtgg cagccgctaa cgttagacgt gtttttcgag       180
     ctcggcgatt ttcgtttgtg aaaaaaaatg gatcaaagaa tttgtattca attttgcgta       240
     aaaaatgaaa taaagtgtag tgaagtttgt aaaatgttaa caaaggcata tggtaagtct       300
     gctatgagta aagcaaggat ttacgagtgg tataagcgtt tccaagatgg ccgcgaaaac       360
     gttgaagatg acgaacgacc cggacgccca agcacatcaa caaccgatga aaacgtgaaa       420
     aaagtggcat agtgcatcat gaattcttgc cacaaggtca aacaatcaat aaggagtact       480
     acctacaagt tcaacgccgt ttgcgtgaag caatccgaaa aaaacgcccg gatttgtggc       540
     aaaacaattc atggcttttg caccacgata atgcacctgc tcacacttca ttgcttgttc       600
     gtgaattttt ggccaaaaac aaaactgtaa cgatgcctca gcctccatat tcgccagata       660
     tggctccatg tgactttttt ctatttccaa aaataaagag aacattaaaa ggccgtcgtt       720
     ttacaagcat agatgacatt aaaagcgaat cgctgaaaga gctaaaagct attacaaaga       780
     tcgagtttca aaagtgtttc gaggattgga aaaagcgttg gcacaagtgt attatatccg       840
     agggggatta ttttgaaggg gacaaaatag atattgatga ataaataaat atttttttca       900
     taaaacgaaa attctcgtta tttttttaac acacctcg                               938
//
ID   Mariner-1_DAn repbase;    DNA;    INV; 1660 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1660
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 257-257 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 34-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1332
FT                 /product="Mariner-1_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MGRGKHCTDEKRDLIKKLIKDGKSFREVGRLVGCSNK
FT                 MIRNAITYKKNQETRGRKPSMTPLEVKRLVRHSKREPFKPATDLKKDLNIA
FT                 ATDQTVRTYLRQHNLKACSPRKVPLLNARHIANRIKFAKEHKNWTPQQWRN
FT                 ILWSDESKVVMYGGKGSRSYVRRPKNSEYKPQYTTKTIKHGGCXVMVWACF
FT                 SYNGVGPIHWIKSIMDQHVYVDILQSVMLPFAEDDMPLIWVFQQDNDPKHT
FT                 SKKAKEWFLNNAVQVLEWPAQSPDLNPIENLWSDVKKAVADSKPTTIDCLW
FT                 GVIKESWTNIPKKRCQDLVDSMPRRCAAVLANKGCATKY"
XX
SQ   Sequence 1660 BP; 580 A; 282 C; 307 G; 489 T; 2 other;
     tgtacagttg cgaaaaaaaa aatagcacca ctacatcaca cttcgattgg gctttaaaaa        60
     aaatagtaat aatgttacca atttattcaa ataaaatttt tttatgtaga atgatattct       120
     tactaaacaa aaaaagagtt atagttactc aaattcttgt tttaatattt ttttttaata       180
     ttttactaaa aaagatcgca aaagaaacga aaataaaaat agcaccactt tccatctcta       240
     aagaattcac aaagaaatgg tmacatttca gcgacttaaa gcacgtgttt tacaaatttg       300
     tcttcaattt aattatttca attaaaaaaa aaaattcaaa tgggtcgtgg aaaacactgc       360
     acggatgaaa agcgtgacct gatcaaaaag ttgatcaagg atggaaaatc ctttcgagaa       420
     gtgggtcgac ttgttggatg ttcaaataaa atgataagga acgccataac ctataagaaa       480
     aaccaggaaa cacgcggtag gaagccttct atgacccctc tagaggtcaa aaggttggtt       540
     cgccatagca aaagggaacc tttcaagcct gctacagatc taaaaaagga cctgaatatt       600
     gctgcaacgg atcaaacagt gcgcacatat ctcaggcaac ataatctgaa agcctgcagc       660
     ccaagaaaag tcccactttt aaatgccagg catattgcta accgtattaa gtttgctaag       720
     gagcataaaa attggacccc ccagcaatgg aggaatattt tatggtccga tgagagcaag       780
     gtggtcatgt atggtggtaa aggatcccga tcgtatgtca gacgtccgaa gaattcagaa       840
     tacaagcccc agtacaccac aaagactata aagcatggag gatgcwgcgt catggtatgg       900
     gcgtgctttt catataatgg agtaggtcct atacactgga taaaatctat aatggatcaa       960
     cacgtctatg tggatatttt gcaatctgta atgttaccct tcgcagaaga tgatatgcct      1020
     cttatttggg tcttccagca ggataatgac ccaaaacaca caagcaaaaa ggcaaaggag      1080
     tggttcctca acaatgctgt acaagttttg gagtggcctg cgcagtcgcc ggatctaaat      1140
     ccaattgaaa atctgtggtc cgacgttaag aaggcagttg ctgatagcaa accaacgact      1200
     atcgattgcc tttggggtgt tattaaggag tcctggacta atatacccaa aaaacgctgc      1260
     caggacttag tagattcaat gccaagacgt tgtgcagctg ttttagccaa caaaggatgc      1320
     gctaccaaat actaatcaac gcatatagat atatttttaa tatatcaata ttgtttacta      1380
     atgaatctct aacgaattag tcattattag catttaaaat ccatttttga aaagtggtgc      1440
     tattattttt ttcgtttaat tttatagact ttaataaatt ttgttaaata acttaagaac      1500
     atctaaaaaa cttatgtttt ttcgttaatt tctattatct tgagggtctt cgattttgaa      1560
     aaaagtataa atcgatttcc taaagttaaa aatatgatta tgatggcaat tgaaaaattt      1620
     tgtctggtgg tggtgctatt ttttttttca cagctgtata                            1660
//
ID   Mariner-1_DAr repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.06, Created)
DT   08-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner-like elements found in Drosophila arawakana.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DAr.
XX
OS   Drosophila arawakana
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; dunni subgroup.
XX
RN   [1]
RP   1-430
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 430 BP; 106 A; 115 C; 118 G; 91 T; 0 other;
     tcgcaacaaa atcgacccgt ttttgaagcg gatggtgact ggcgatgaaa agtgggtcac        60
     ttacgacaac gtgaagcgca aacggtcgtg gtcgaaaagc ggtgaagctg cccagacggt       120
     ggccaagcct ggattgacgg ccaggaaggt tctatctgtg tgtttggtgg gattggcagg       180
     gaatcatcca ctatgagctg ctcccctatg gccaaacgct taattcggac ctgtactgcc       240
     aacaactgga ccgcttgaat gcagcactca tgcagaagag gccatctttg atcaacagag       300
     gccgaattgt cttccatcag gacaacgccg cccaccttca cacatctttg gtgacgcgcc       360
     aagaagctcc ggggaagctc ggatgggagg ttcttttgca tccaccgtaa cagccccgac       420
     cttagctcca                                                              430
//
ID   Mariner-1_DBi repbase;    DNA;    INV; 1327 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1327
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 736-736 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 77-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..1268
FT                 /product="Mariner-1_DBi_1p"
FT                 /note="transposase."
FT                 /translation="MDQRICIKFCVKNKIKCSETLEMLTVAYGETVLSKKN
FT                 VYKWYKLFQDGREDANDEPRSGRPSTSTTDENVQAVKKIVLENRRITIREV
FT                 AEDVGISLGSCHEIFSNVLGMSRVSAKFVPKLLNFDQKNRRMSIAQELLDD
FT                 VNDDPDLLKRVITGDESWVYGYDIETKAQSSQWKSPGEPRPKKARQVRSNV
FT                 KVLITVFFDYHGVVHQEFLPYGRTVNKQYYLEVMRRLREAIRKKRPELWKN
FT                 NSWLLHHDNAPAHSSLLVRDFLAKNNTTIMPQPPYSPDLAPCDFFLFPKLK
FT                 RPMKGRRFATIEEIKTASLEELKAIPKSAYGKCFEDWKNRWHKCIVSEGDY
FT                 FEGDNINIDK"
XX
SQ   Sequence 1327 BP; 412 A; 246 C; 291 G; 378 T; 0 other;
     tacgaggtgt gttcaaaaag taaggtgact tttcaaattt cgcgggcaac atattttcga        60
     ttatcgattt ttttgttttg ttatgttggt acactcttcc ctaacatctg taccaagttt       120
     caattgaatc cccttttttg tttagttgtg agaggcgtaa aggtaacaag ttgttttgcg       180
     tgctcagcga ttttttgcta tcgaaaaata tggatcaaag gatttgcatc aaattttgtg       240
     taaaaaataa aattaagtgc tccgaaacac ttgaaatgtt gacagtggca tacggtgaaa       300
     ctgttctgag taaaaaaaat gtttacaagt ggtacaaact cttccaagat ggccgggaag       360
     atgccaatga cgagcctcgc tctggacgcc caagcacgtc aacaactgat gaaaacgttc       420
     aagcagtgaa gaaaattgtt ttggaaaatc gtcgaatcac tatcagagaa gttgctgaag       480
     atgtcggtat atcgcttggc tcgtgccatg aaattttttc aaacgttttg ggcatgagtc       540
     gtgtgtcagc gaagtttgtt ccaaaattgc tgaattttga ccaaaagaac cgtcgcatga       600
     gcatcgctca agagctgttg gatgacgtca acgacgaccc agatttactc aaaagggtca       660
     taactggtga cgaatcatgg gtatatggtt atgatatcga aaccaaagcc caatcgtcac       720
     aatggaagag cccaggtgag ccaagaccga aaaaagcacg ccaagttcga tcaaatgtca       780
     aagttttgat cactgtattc ttcgattacc atggcgtggt gcatcaggag ttcttaccat       840
     atggtcgtac ggtcaataaa cagtattatc tggaagttat gcgccgtttg cgagaagcaa       900
     tacgaaagaa acgtccagaa ttgtggaaaa acaattcatg gcttttgcat cacgataatg       960
     cccctgctca ctcatctttg cttgtgagag attttttggc caaaaacaac accacaataa      1020
     tgcctcagcc accatattca ccggatttgg ccccatgtga ctttttcttg ttcccaaaac      1080
     taaagagacc tatgaaagga cggagatttg caacgattga agagataaag actgcatcgc      1140
     tggaagagct caaggctata ccgaaaagtg cttatgggaa gtgctttgag gattggaaaa      1200
     accgttggca taagtgtatt gtatctgagg gggattactt tgaaggggac aacattaata      1260
     ttgataaata aattaatagt ttttcttgaa aatacaaagt caccttactt tttgaacaca      1320
     cctcgta                                                                1327
//
ID   Mariner-1_DBp repbase;    DNA;    INV; 1605 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1605
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 584-584 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. ~27-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           351..1343
FT                 /product="Mariner-1_DBp_1p"
FT                 /translation="MPRGLHLSEEDRGMIKGLAESGQTISYIAARLNRHRN
FT                 TISNFLKNPESYGKIKRSGRPTKIDERCKRRIRRLAVQDNKSCMEIKGQLN
FT                 LEVSKRRINQILNQNAMVTYASRDPVPRLLKRHITARLQFAEKYKFWSEEF
FT                 KNVIFSDEKKFNLDGPDSCQKYWRDKRQPRQVCHKRNHGGGSLMVWAGFGY
FT                 AGKSPLCFIPTRTNAEIYIELLETVLIEFAGDIYGDEWIFQQDNAPIHTAR
FT                 KTKDFLAARKIPLLQWPAISPDLNPIEDLWGILSNKVYKNGRQFDTVNDLK
FT                 KALIKEWDQINPTTLKNLANSMPNRINQIFIMKGSHINY"
XX
SQ   Sequence 1605 BP; 546 A; 269 C; 294 G; 496 T; 0 other;
     cctcagggaa agaagtatat gtgcactttt taatttgctg tatttctcta aagttaaggt        60
     acagtttttg taagtacgca gttttgtatt cttatctttt atgaacatat cctaattcaa       120
     cggtcctctt tggacttcat tcgttgtacc gtttctaaga acatgtgctg aaacttgtga       180
     ttttaatagg aaataagtat atgtgcatat tgagattact ctgttattga tagcgattaa       240
     gctaagaagt gtgatctaaa aatatttttt agtcagcgca acgtaagtaa aatatacttt       300
     tttatctttg tataataaaa taataatatt tagtttgatt ttacggtaga atgcctcgtg       360
     gtttacattt gtcagaggaa gatcgcggca tgatcaaagg actggctgaa tctggccaga       420
     ccatttctta tattgctgcc agattaaata ggcacaggaa tacaattagt aacttcctta       480
     aaaatccaga aagttatgga aaaataaagc gaagcggcag gcccactaaa atcgacgagc       540
     ggtgcaagag aagaattcgg cgtctagcag ttcaagacaa caagtcttgc atggagataa       600
     aaggtcaact gaatcttgaa gtgtccaaaa gacgtataaa ccaaatttta aaccaaaacg       660
     caatggttac atatgcttca cgcgaccctg taccaaggct attaaagcgc cacataaccg       720
     ctcgtctaca atttgctgag aaatacaaat tttggtcgga ggagtttaaa aatgttatat       780
     tttcggacga aaaaaaattt aacttagacg gccctgactc ctgtcaaaag tactggcgcg       840
     acaaaaggca accacggcag gtctgccata aacgaaacca cggtggagga tcattaatgg       900
     tttgggccgg atttgggtat gctgggaagt ctccactttg ttttataccg actagaacaa       960
     atgcagaaat ttatatagag ttactagaaa cagtgctcat tgaatttgct ggagacattt      1020
     atggggatga gtggatattc cagcaagaca acgcgccaat ccacacagct cgcaaaacaa      1080
     aagactttct ggcagctaga aaaataccgc tattgcaatg gccagcgatc agcccggacc      1140
     taaacccaat agaagatctt tggggaattc tttctaataa agtttacaag aatggtcgcc      1200
     agttcgacac agttaatgac cttaaaaagg ctttgatcaa ggaatgggat caaattaatc      1260
     cgacaacgct gaaaaactta gcaaattcaa tgcccaatcg tattaatcaa atttttatta      1320
     tgaaaggaag tcatataaat tattaggaag tgtacttaaa attttgaaaa attttccaac      1380
     atgtatttcg aattttcggc cagtatgcac atttacttat ttcatatgaa attaaaattc      1440
     tttatttaat ttaaagttaa tcaaaacgtt tacgaaaact atattgttat ttttttgtta      1500
     atatgtattc cagcaatata aataaattta atcaaaaacc taatataatt attttatggt      1560
     ttttttttta ataatttcaa tgcacatata cttctttccc tgagg                      1605
//
ID   Mariner-1_DEl repbase;    DNA;    INV; 1246 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1246
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 414-414 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. 33-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..1165
FT                 /product="Mariner-1_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MEQNKEKIRHILQYYYDKGKNASQAANKICAVYGPDT
FT                 VSISTAQRWFQRFRSGVEVVEDAPRSGRPVVENCDKIAELVERDRHSSSRS
FT                 IGQELGMSHQTVINHLKKLGVTKKLDVWVPHELTQKNIFDRIDACESLLNR
FT                 NKIDPFLKRMVTGDEKWVTYDNVRRKRSWSKSGEAAQTVAKPGLTARKVLL
FT                 CVWWDWQGIIHYELLPYGQTLNSDLYCQQLDRLKAALMQKRPSLINRGRIV
FT                 FHQDNARPHTSLVTRQKLRELGWEVLLHPPYSPDLAPSDYHLFLSMANALG
FT                 SLKLATRESCENWLSEFFANREASFYERGIMKLASRWERVIEQNGAYLT"
XX
SQ   Sequence 1246 BP; 344 A; 274 C; 310 G; 318 T; 0 other;
     tattaggttg tcaaaaaagt cttgcggtat tttcgctagt tggcgctgaa agcgcgtagt        60
     tcttgtttta ttcgtcgcat caggtcacct ttgattgatt gtcttttctt ttaagtcgtt       120
     cgtgagttat agcgtcgcaa tcatggagca aaataaagag aaaatacggc atattctaca       180
     gtactactac gataaaggca aaaatgcatc tcaagccgcc aataaaattt gtgcagttta       240
     tggacccgat acagtttcca tttccaccgc acaacgatgg tttcaacgtt ttcgttctgg       300
     tgtagaggtg gtcgaagatg cgccacgctc cggaaggcct gtcgtcgaaa attgcgataa       360
     aatcgctgaa ttggtcgaaa gagaccggca tagtagcagc cgtagcatcg gtcaagagct       420
     gggcatgagt catcaaaccg ttataaacca tttgaagaag cttggagtca ctaagaagct       480
     cgatgtatgg gtgccacacg aattgacgca aaaaaacatc tttgaccgta tcgacgcatg       540
     cgaatcgctt ctaaatcgca acaaaatcga cccgtttttg aagcgtatgg tgactggcga       600
     tgaaaagtgg gtcacttacg ataacgtaag gcgcaaacgg tcgtggtcga aaagcggtga       660
     agcggcccag acggtggcca agcctggatt gacggccagg aaggttcttc tgtgtgtttg       720
     gtgggattgg cagggaataa tccactatga gctgctcccc tatggccaaa cgctcaattc       780
     ggacctgtac tgccaacaac tggaccgctt gaaggcagca ctcatgcaga agaggccatc       840
     tttgatcaac agaggccgaa ttgtcttcca tcaggacaac gccaggccac acacatcttt       900
     agtgacgcgc cagaagctcc gggagctcgg atgggaggtt cttttgcatc caccgtatag       960
     tccggatctc gcaccaagtg attaccacct gtttctgtcc atggcgaacg cgcttggtag      1020
     tctgaagttg gccacaagag agtcctgtga aaattggctc tccgagtttt ttgccaatag      1080
     ggaagcgagc ttctatgaga ggggcattat gaagttggca tctcgttggg aacgcgtcat      1140
     cgaacaaaac ggcgcatatt tgacttgaat cgcattattg taaccaattt tatgaacaat      1200
     tgaaaattca ataaaaatac cgcaagactt ttttgacaac ctaata                     1246
//
ID   Mariner-1_DEr repbase;    DNA;    INV; 957 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.03, Created)
DT   02-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila erecta genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DEr.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-957
RA   Jurka J.;
RT   "DNA transposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 293-293 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..955
FT                 /product="Mariner-1_DEr_1p"
FT                 /translation="MERSLEQRYAIKFCVRLGKNASETYQMLREAFKEECI
FT                 SRSQCGRWHKAFKEGREEVTDDPRSGRPTTARIDENVRRVRETLSSDRRLS
FT                 IRAIVDILNLSTFAVHGIVTEDLQMRKVCAKLVPKVLTEEQKNVRVLRCEE
FT                 LLESIRNDPGFXNFTVTGDESXMSEYDPESKRQSSEWHFCQVAHKTLWRTA
FT                 VPANAPSHRDTTEKMTSLYDTSYHFYCSERTETERVGKERLRPKFSDRSER
FT                 ATTGSYVTTKPCALLS"
XX
SQ   Sequence 957 BP; 252 A; 213 C; 256 G; 233 T; 3 other;
     tatgaaagta atgcgcatgg tttcattgtc acgtaactac ctgtcgtagc acgctcggac        60
     ctgtctgaaa atttggggcg gagtctctcc tttccaacgc gctcggtctc agttcgctct       120
     gagcaataga agtggtagga cgtgtcgtag agcgaagtca ttttttctgt tgtgtcacgg       180
     tgcgatggag cgttcgctgg aacagcggta cgccataaag ttttgtgtgc gacttggcaa       240
     aaatgcatcg gaaacttatc aaatgcttcg agaggccttt aaggaggagt gcatttcgag       300
     atctcagtgt ggaaggtggc acaaggcctt caaggagggt cgagaggagg tcaccgacga       360
     tccacgttcc ggacgtccaa caacagcacg aattgatgaa aacgttcgcc gtgtgcgaga       420
     aactttgagt tcagaccgtc ggttaagcat ccgggcaatc gttgacatcc taaacttgtc       480
     aacatttgcg gtacatggaa tagtgacgga ggatttgcaa atgcgaaagg tctgtgcgaa       540
     gcttgtgccg aaggtgttga cggaggagca gaaaaacgtt cgagttttgc gctgtgaaga       600
     attgttggaa tcgattagaa atgatccagg ttttttnaat tttactgtna ctggggatga       660
     atcctgnatg tccgagtacg atccagaatc caaacgacag agctccgagt ggcatttttg       720
     ccaagtcgca cacaaaactt tatggcgtac cgctgttcca gcgaacgctc catcgcaccg       780
     tgacacaaca gaaaaaatga cttcgctcta cgacacgtcc taccacttct attgctcaga       840
     gcgaactgag accgagcgcg ttggaaagga gagactccgc cccaaatttt cagacaggtc       900
     cgagcgtgct acgacaggta gttacgtgac aacgaaacca tgcgcattac tttcata          957
//
ID   Mariner-1_DEu repbase;    DNA;    INV; 1633 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.06, Created)
DT   19-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1633
RA   Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 753-753 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to  consensus. Low-copy.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..1313
FT                 /product="Mariner-1_DEu_1p"
FT                 /translation="MGRGRHCSAEERKLIRRLRDEGKTYKSIAVLMKRSRN
FT                 FVTNALKPKKVGETRGAPRKTSSRADNRMVQLVKRDPFKSSRRISNEIGNI
FT                 VSSRTVRRRLAMANLPGRIARKVPLLRPKNKKMGKQFALDRKAWSGPEGEK
FT                 KWHNILWSDETKINLFGNDAKRNVHRPKGKEFDPKYTCKTVKHGGGSLMVW
FT                 GCFSWNGVGPIHRIDGIMDRFVYRDLLGTVMLPYAEDNMPILWKFQQDNDP
FT                 KHASLLVREWFREQNVDVLEWPSQSPDLNPIENLWGELKREVGRSSCQNKN
FT                 QLWDIVQKSMVLHPHWNLSQADIIHAKTNGESSQK"
XX
SQ   Sequence 1633 BP; 555 A; 273 C; 350 G; 453 T; 2 other;
     cactcatgga caaaataata ggtgtgaatt ttttttttga ggatatcgat tttaattgat        60
     ataaacataa catattatgg gaaaactata cttttttatt atggttacac tgttacgatc       120
     aatttttggt gaattcccgg aagtcagaag ctttctgaag aaaattgtgg atattttatt       180
     gctcagactg caaattcgcc tggacantaa aataggtgtg tcgagcaaaa ctttaatcta       240
     aagctaatta ggataattgt ttggttgcag aaagtaaggt attacgataa tttaactaaa       300
     tcgggaanta acaatcacta aaattgcatt agatgggccg tgggagacat tgcagtgcgg       360
     aagagaggaa gctcattcga cgactccgag atgaaggaaa aacatacaaa tcgattgctg       420
     ttttaatgaa acgatctcgg aattttgtaa ccaatgcgtt aaaaccgaaa aaagtaggtg       480
     aaactcgggg agcacccaga aaaacatcat ctagggccga taatcgcatg gttcagttgg       540
     ttaaacgaga cccgttcaag tcttccagga ggatttccaa cgaaattgga aatattgtgt       600
     catcacggac cgttcggcga cgtttggcaa tggcaaacct accaggtagg attgcccgca       660
     aagttccttt gcttcggccg aaaaataaaa agatggggaa acaatttgct ctagatcgta       720
     aagcctggtc aggaccggag ggtgagaaaa aatggcataa cattctctgg agtgacgaaa       780
     ccaaaataaa tttatttgga aatgatgcta aaaggaatgt tcaccgtccg aaaggcaaag       840
     aatttgatcc caagtacacc tgtaagactg taaaacatgg aggtggtagc ctaatggtat       900
     ggggatgctt ttcatggaat ggtgttggtc cgattcatcg cattgatgga ataatggaca       960
     gattcgtata cagagactta ttggggacag tgatgctgcc atatgctgag gataatatgc      1020
     caattttatg gaagttccag caggataacg acccaaaaca cgcctctcta ctagtcaggg      1080
     agtggtttcg tgagcaaaat gtggacgttc tggaatggcc gagtcaatcc cctgacctaa      1140
     atcccatcga aaatctctgg ggtgaactca aaagagaggt aggaaggtcc tcgtgtcaaa      1200
     ataaaaacca actttgggat attgtccaaa aaagcatggt actccatccc cattggaact      1260
     tgtcgcaagc tgatatcatc catgccaaga cgaatggaga aagttctcaa aaataatgga      1320
     gagtataccg gctactaact gctacatact caacttaatg tacaaaaaga tcaaaaatag      1380
     tgaaatatcc atttagttta aacgtttagt tccttacacc tattattgtg tccagccaaa      1440
     aatggccaac ttaggaaaaa atctacttct gttgttaatg ataaggttta tagtattgtt      1500
     tcttttttct tttaaagaca attaatatac gttttaaaaa aactttgttt tgagctgatt      1560
     ggagaaagca tgacttagaa attaaaagtt aaaaatgaaa aataaaacac acctattatt      1620
     ttgtccataa gtg                                                         1633
//
ID   Mariner-1_DF repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   26-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 768-768 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1211
FT                 /product="Mariner-1_DF_1p"
FT                 /translation="MEDQSEHFRHILLFYFRKGKKAVEAREKLCEVYGKDA
FT                 MSDRQCQRWFAKFRLGDFGVKDAPRSGRPSAVFDEQIQALLDENRRYSTRE
FT                 MSEKLSVSHTTVENHLKKLGYVSKLDVWVPHNLKEIHLTKRINICYSLLQR
FT                 IKNDPFLKRIITGDEKWVVYNNVQRKRSWSKKDEPAQATSKADIHQRKVML
FT                 SVWWNWKGVVHFELLGRNETINSDVYCRQLSNLAEKIKEKEPALANRKGIV
FT                 FHHDNARPHTSLVTRQKLTELNWEVLPHPPYSPDLAPSDYHLFRSLQNSLN
FT                 GKNFDSDEAVENHLSRFFAGKDQKFFERGIMQLPERWSLVVEQNGQYIID"
XX
SQ   Sequence 1290 BP; 398 A; 249 C; 285 G; 358 T; 0 other;
     tattgggttg gcaagaaagt catgtcgttt tttttagtaa tcgtttttaa tctaatttat        60
     ttacgactaa tcgagcacca gggtcacact ttttagtatc gttttaaagc ttattgtctt       120
     aggtactatc gacgaaaatt tggtaattat tcgataacat ttgtggaagc tatagcaaat       180
     taaacatgga ggaccaaagt gagcattttc ggcatatttt gcttttttac ttccgaaaag       240
     gaaaaaaagc ggtcgaagct cgcgaaaaat tgtgcgaagt gtatggtaaa gatgccatga       300
     gtgatcgcca atgtcagcgc tggtttgcca aattcaggct tggagatttt ggagttaaag       360
     acgccccacg ttctggtcga ccatcggccg tttttgacga acaaattcag gctttgctgg       420
     atgaaaaccg gcgttattca acgcgggaga tgtcagagaa gctcagtgtg tcgcatacaa       480
     cggttgaaaa ccatttgaag aaacttggct acgtaagcaa gctcgatgtt tgggttccgc       540
     ataacttaaa ggaaattcac ctaactaagc gtatcaacat ctgctattct ctgctgcaac       600
     ggattaaaaa cgatcctttt ttgaagcgga tcattactgg cgacgaaaag tgggttgttt       660
     acaataatgt ccaacgaaaa agatcatgga gcaagaaaga tgagccagcc caagccacat       720
     caaaggccga tatccatcag aggaaagtta tgctgtctgt ttggtggaat tggaagggtg       780
     tagtgcactt tgagctgctg ggacggaatg aaaccatcaa ttcagatgtg tactgtcgcc       840
     agctatccaa tttggcggaa aaaattaaag aaaaggagcc ggcactagct aatcgcaagg       900
     gtatagtctt tcaccatgac aacgctaggc cccacacatc tttggtcact cggcaaaaat       960
     taacggagct gaattgggaa gtgctaccac atccacctta tagtccggac ttagcacctt      1020
     cagattacca tttgtttcgc tctcttcaaa actctttgaa tggtaaaaac tttgattcag      1080
     atgaggctgt cgaaaaccac ttgtctcgat tctttgctgg aaaagaccaa aagttcttcg      1140
     agcgcggaat tatgcagctg cccgagagat ggtcattagt ggtcgaacaa aacggccaat      1200
     acataattga ttaattataa gtcctgatat aaataaatca tctttgaaaa tattgaaaaa      1260
     aaacgacatg actttcttgc caacccaata                                       1290
//
ID   Mariner-1_DGr repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 17.07, Created)
DT   24-SEP-2011 (Rel. 17.07, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from Drosophila grimshawi: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DGr.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1648
RA   Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(7), 1179-1179 (2012).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           361..1113
FT                 /product="Mariner-1_DGr_1p"
FT                 /translation="MDKRTTIEQRNLILEHFKIGYSHRQIAKMVNLSTTTV
FT                 FNIIRRFVDENRIEDKGRNAPNKIFTEQEERRIIRKIRENPKLSAPKLTQQ
FT                 VQDEMGKKCSVETVRRVLRNHDFNARVPRKKPFISAKNKGTRMTFVKTHLD
FT                 KDLEFWNXFIFEDEPKFNIFGSDGRNYVWRQSNTELSPKILKATVKHGGGS
FT                 VMVWASISEAGVGNLVFIETTMDKNVYLNILKENLLQSAEKLGIRRTFRFY
FT                 HDNDQDNSQA"
XX
SQ   Sequence 1648 BP; 535 A; 332 C; 335 G; 440 T; 6 other;
     cagtgtctcg cagctcaaaa ggcccagtgc ctagcaaaaa atttaattgc ctgccataaa        60
     ctaattatcc aatatttttc aaaaattcca aagaccgatg gcaggtacat atattaacca       120
     ccwwaatgam tatatgaccc cmataaactg gggtttcccc acckgctagg ccgggttatg       180
     taaaaaagta ccttaattta tggtcacata ttatttggac caggggcgtt atggacacct       240
     gggtgccata aaacccggat tttttacgtc aggttgatta ttttcggtat aaatagacca       300
     atccttcgta gtcagtttag ttatatcctg catctcgggt gcaaccagcc aacaaggact       360
     atggacaaac ggactaccat tgagcaacgg aatctcatcc tggaacactt caagattgga       420
     tattcacatc gccaaatagc taaaatggta aatctaagca ccacaactgt attcaacatc       480
     attcggcgct tcgtcgacga aaatcggata gaggacaagg gcagaaatgc accaaacaag       540
     attttcaccg aacaggagga gcggaggatc atcaggaaaa taagggaaaa tcccaagcta       600
     tcggctccaa aactgactca acaggtgcag gatgaaatgg ggaaaaagtg cagtgtggaa       660
     actgtgcgcc gggttctgcg caaccatgac tttaatgccc gagtaccacg gaagaagccc       720
     tttataagcg caaaaaataa agggactagg atgacattcg tcaaaaccca cttggacaag       780
     gatttggagt tctggaacam attcatattt gaagatgagc ccaaattcaa catttttggc       840
     tcagacggac gaaattatgt gtggcgacag tccaatactg agctgagtcc caaaatccta       900
     aaggcaacag tcaagcacgg cggaggaagt gtcatggtat gggcatctat ctcggaagcc       960
     ggcgtcggaa atttggtgtt tattgaaaca acaatggaca agaatgtgta tctcaatata      1020
     ttaaaggaaa atttactcca aagtgccgag aagctaggaa tccgacgtac tttccggttc      1080
     taccacgaca acgaccagga caacagccaa gcataagtcc ggattagtac agtcctggct      1140
     atctggaact gcccccacat gataattcca ccggcccagt ctccagattt aaatgttatt      1200
     taaaatttgt gggctctgct ggaaaataac atccggaatc acagatccga tctcaaaaat      1260
     gctctgctgg atgagtggag caaaatcagt ccagaaacta cccggaagct ggtatcttcc      1320
     atgaataata ggttaaggga agttattaag gctaaaggat atcatactaa gtattaacat      1380
     ccttatttaa gtttttatac gccaaatatg ttacttttct aagactgttc caaataagct      1440
     ttgacatgta ttttggacat gttttcagtt tttgactaat tttaattaat taattaatat      1500
     tttaataaaa actaaagttt atttttcaaa cgtgatataa catgaaacaa attggcattt      1560
     aaacattttg cgtttgtttc tttgtttaaa ccttatagca ctttaaattt tttgctagac      1620
     actgggcctt ttgagctgtg agacactg                                         1648
//
ID   Mariner-1_DHyd repbase;    DNA;    INV; 1634 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila hydei genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-1634
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2245-2245 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 217-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           397..1341
FT                 /product="Mariner-1_DHyd_1p"
FT                 /note="transposase."
FT                 /translation="MKKRSSDVENSIISLTESGCSTRSTSDQLNIFHSAVS
FT                 EVQKRRNGTSKNTIKGRKRLLKDSDARLMGTDKFLTPKKASMDIGKDVSRR
FT                 VARRALAKVGYVASVKQNKPALSEKNVKGRLKFAREHKNWTVDDWKRFIWS
FT                 DESKFNRFQSNGTQYYWHRSGEKLQKHHVKQTV*HGGGNVKVWGCFTWWHI
FT                 GPLHKIDGIMLKEDHLNILKTCLPNFLDKCAYPVKEIIFHQDGDPTHTAKT
FT                 VREWLQNQDFMLMEWPAKSPELNPIENLWSIVKRRLGQYQSMPSNLDDLWK
FT                 RVELKWNRVPKETIEKLVESMPN"
XX
SQ   Sequence 1634 BP; 549 A; 286 C; 320 G; 479 T; 0 other;
     tacagtaggg agcaaaagtg tttccatagt tgacactttc aactttgtga gtcgataatt        60
     tctaaacgaa tgaagcaaat caaaaaaact tttttttcca ataatatgta tttaattctt       120
     aacaaattgc cgtatataac aaaaacaaaa aataatcagt aaaatattca aacgaagaaa       180
     actgaaacaa aacgcatgtg tacaattttg caccttccga tattcttact ttggtttgat       240
     ttcttaattc tcttatcggc aatacacatg cagttttacc cttatatgtt ttatttatgc       300
     attctacact tttatgatcc agaaatccac gtgtttctta ttatttgaag tagatttttt       360
     aattttagca attagtctac aaagtaccgc gaaaaaatga agaagcgttc gtcagatgtc       420
     gaaaatagta ttattagcct aactgaaagt ggctgttcga ctcgtagtac ttcagatcag       480
     cttaatattt ttcattcagc ggtgtccgaa gtccagaaaa gacgcaatgg tacatccaaa       540
     aacactatta aaggccgcaa acgactctta aaggactctg acgccagact aatgggaact       600
     gataagttcc taacaccgaa gaaggcatct atggacatag ggaaagacgt gagtcggcgg       660
     gtggctagaa gagcactagc taaggttgga tatgtggcaa gtgtgaaaca aaataaacca       720
     gctctatccg agaagaatgt caagggtcga ttgaaattcg cccgggaaca caagaactgg       780
     actgtagatg attggaaacg ttttatctgg tcggatgaat ccaagttcaa ccgttttcaa       840
     tcaaatggca cgcaatacta ttggcacagg tccggggaaa agcttcaaaa acaccatgtg       900
     aagcaaaccg tttagcatgg aggaggcaat gtcaaagttt ggggatgctt tacttggtgg       960
     cacattggac cattgcataa aattgatggt ataatgttaa aagaagacca tctaaatatt      1020
     ttgaaaacct gtctacccaa ttttctggac aagtgtgcat accccgtaaa ggaaatcatt      1080
     tttcatcaag atggggatcc gacgcacact gccaaaactg tccgcgaatg gttacaaaac      1140
     caagatttta tgctgatgga gtggccagct aaaagtcccg aactcaatcc gattgagaac      1200
     ctgtggtcaa tcgtgaagcg acggctcggg caatatcaat caatgccatc caacctagac      1260
     gatctttgga agcgtgtaga actgaagtgg aaccgagttc caaaggaaac catagaaaag      1320
     ttggtcgaga gtatgccaaa ctgaataaaa aatgtaatag ctaataaggg cctgtggaca      1380
     aaatattgat ttagaatcat atttaatttt tttcactgaa ggtgcaaaat tgtacacatg      1440
     cgttttgttt cagttttctt cgtttgaata ttttactgat taacttttgt ttttgttata      1500
     tacggcaatt tgttaagaat taaatacata ttattggaaa aaaaagtttt tttgatttgc      1560
     ttcattcgtt tagaaattat cgactcacaa agttgaaagt gtcaactatg gaaacacttt      1620
     tgctccctac tgta                                                        1634
//
ID   Mariner-1_DK repbase;    DNA;    INV; 1641 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1641
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1194-1194 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 255-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           525..1367
FT                 /product="Mariner-1_DK_1p"
FT                 /note="transposase."
FT                 /translation="MSINKKGEKRKVVFMVQNNPKLTSREVQQEVESRFSK
FT                 TVSYSTIRRIIKKSGFMSCVARKKPYISKTNREKRIQFAKDHISKPPEFWK
FT                 SVIFSDESKFCIFGIKGKKLIWRKSGEALEKQNLLPTVKHGGGGIMIWGCM
FT                 AANGVGNLHFIDGIMDHKIYIQLLKDNLVQSATKLGLQNKFIFQQDNDPKH
FT                 TAQNVKLWLLYNVKNQLKTPPQSPDLNPIEHLWDLLERRIRQHSITSKAML
FT                 KTILQQEWDQIAEAETEKLVNSMPRRLAEVLKRKGYPTSY"
XX
SQ   Sequence 1641 BP; 567 A; 300 C; 329 G; 443 T; 2 other;
     cactcagcgt catatctctg cgtacagggc aaatattttt aaacttgtca ctttgacagg        60
     taaaatctta ggctagacgt gatataaaaa cattatgatt tttgttacgg atagtcgtag       120
     caattacctt catattccat attttagaaa atttttatct tctttggtac ccctataatt       180
     cgtatttcgc caaaaccctc taaaataaca tgctttcaaa agtttgcgta cagctgaata       240
     tagttgcatt tattggtaag ttagtagtcc gatttgaatt gcattatcaa gataggcaaa       300
     gatgcaactg tcaaacgatt tgtcaatgca tttttaatta tggacggcaa aggaaagcaa       360
     attcaagact ccgaaaggaa aatcatctta aaattgcatt tggaaggaaa aagctataga       420
     gatattggcg gaatcttagg tcgcgcacac tcttcagtgc agagagtcat aagtaattat       480
     atttcgaccg gttctatact tcccaagctc cgagaaggcc gcccatgtcg attaacaaaa       540
     agggggaaaa aaggaaagta gttttcatgg tccaaaacaa tccgaaattg acttccagag       600
     aagtgcagca agaggtggaa agtcggtttt ctaaaaccgt ttcgtactcg actatccgaa       660
     gaattataaa aaaatccgga ttcatgagct gcgtggccag aaagaagccc tacatttcca       720
     aaacaaatcg agagaaacga attcaatttg caaaggacca tatttccaag cctccagagt       780
     tctggaagtc tgtgattttt tccgatgaaa gcaagttttg catatttggw ataaaaggaa       840
     aaaagttaat ctggcgcaag agcggagaag cccttgaaaa gcagaattta cttccaactg       900
     taaaacatgg aggaggtgga ataatgatat ggggttgtat ggcagctaac ggcgttggaa       960
     atctgcactt catcgatggt attatggacc ataagatata tatccaactg ttaaaggata      1020
     atttggtcca aagtgcaacc aaactggggc tmcagaacaa gtttatcttt caacaagata      1080
     acgatcccaa gcatacagct caaaatgtca agctctggtt gctgtataac gtgaaaaatc      1140
     aactgaaaac accgccacag tctccagacc tgaaccccat cgagcacctg tgggatttat      1200
     tggaacgcag aattaggcag cactcaatta catccaaagc aatgctaaaa accatattgc      1260
     agcaggaatg ggaccaaata gccgaagctg agactgagaa gttggttaat tctatgccaa      1320
     gacgtctcgc cgaagtccta aaacggaaag gttatccaac ctcatattaa attgcgataa      1380
     aatggtcaat aaatgcaact atattcagct gtacgcaaac ttttgaaagc atgttatttt      1440
     agagggtttt ggcgaaacac gaattatagg ggtaccaaag aagataaaaa ttttctaaaa      1500
     tatggaatat gaaggtaatt gctacgacta tccgtaacaa aaatcataat gtttttatat      1560
     cacgtctagc ctaagatttt acctgtcaaa gtgacaagtt taaaaatatt tgccctgtac      1620
     gcagagatat gacgctgagt g                                                1641
//
ID   Mariner-1_DMac repbase;    DNA;    INV; 478 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_DMac.
XX
OS   Drosophila maculifrons
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   guarani group; guaramunu subgroup.
XX
RN   [1]
RP   1-478
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones that show less than eight percent divergence.
XX
SQ   Sequence 478 BP; 132 A; 113 C; 124 G; 109 T; 0 other;
     tttgggtgcc gcacgagctg aataaaaaaa aatctcttgg accgaatcaa cgcttgcgat        60
     tctctgctaa aacggaacga agcggatggt gagtggtgat gaatagtgga taacgtacga       120
     caacgctaag cgaaaaagat cgaggtcgag aaggggtgag ccggcccaaa ccatcgccaa       180
     acccggattg accgccacga aagtttttct gtttgtttgg tgggattgga agggaattat       240
     ccactatgag ctgctcaact atggccagat ccttaattcg gtcctctact gtgagcaact       300
     tgaccgtttg aagcaggcaa ttaaccagaa gcggccagaa ttggtcaata ggcatggtgt       360
     tgtgttccat caagacaaag ctcgtcctct cacatctttg atgacccggc caaaagctac       420
     gggagctcgg atgggatgtt ctatcgcacc cactgtactc acctgaccta gccccaag         478
//
ID   Mariner-1_DMo repbase;    DNA;    INV; 1680 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1680
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1680 BP; 558 A; 302 C; 341 G; 479 T; 0 other;
     agtatataca cttgctcgca gaactctgcg tacacttgca aacaaacccc tatttctaag        60
     tttacatgta tattgtattt aatatagaag acttaatgca atacttcttt ttgtataaca       120
     attttcattt atttattaac ataattatgt tttcatttta ttattaaaac taaacctaat       180
     atagaaaaaa attataaaca aaacacatta ccaaaaaatg acacctcaaa agtctgcgta       240
     cattttaagt ttgctgcgta cagcgctgga attcacgatc accgttagtt tttgcatgtt       300
     tctttaattc ctcttcgctc atttgcgtaa tttgctatca ctttgaaaag aaatttggca       360
     cgcgtttcat catggagcaa aaagggaaag aaatatcggt agaagttcgt aagcttatat       420
     taaaatatag gttagaaggc aaatcctacc gagaaattgg tctattggta ggcagaactc       480
     attcttcgtg ccaaagagtc tacgacaatt atgtctcatc gggctctata ttgtcaaagc       540
     ctcgttcagg ccgcccaccc ttgctcacgg aacgagagaa aaaacgtatt gttcaattgg       600
     tacctcaaaa tccaatgata tctgctcacc aaggacgtct ggaagttgca gaacgtttct       660
     ccaaaactgt ttctgaggaa accgttcgac gcacttggaa aaaagcgggg tatcatggcc       720
     gcgttgcacg taggaagcca catgtatcag aggtgaacag gaaaaagcga atggacttcg       780
     ccaatgagca catttccaag ccttctagct tctggaaaag ggtaattttc tcagatgaga       840
     gcaagttttg cctatttggc ataaaaggaa agaaaatagt atggagaaaa agcggaacag       900
     ccatggataa ggaaaattta ttgcctacag taaagcatgg tggaggtggt gtaatggtgt       960
     ggggatgtat ggcggctagt ggcgtgggaa atctctcttt tatagaatca acaatggacc      1020
     ataaggatta tataaaagtt cttagtgaga atctgcatca gagtgcccag aaattgcacc      1080
     tggaggacga attttgcttc caacaggaca atgatccgaa gcatacagcc cacaatgtaa      1140
     agctctggct actttacaat gtaaaaagcc aactccgaac gcctccccag tccccagacc      1200
     tcaatcctat tgagcatcta tgggacttac tcgagcgtag gattcggcag cacaccataa      1260
     ggtctaagaa catgctgaag gaggtcatga tggaagaatg gggcaaaata actgcagagg      1320
     acactaaaaa gctggttgag tcaatgcctc gccgtctggc tgaggtgtta aaacgaaaag      1380
     ggtatcctac aagatactaa caactaacaa attccagcgc tgtacgcagc aaacttaaaa      1440
     tgtacgcaga cttttgaggt gtcatttttt ggtaatgtgt tttgtttata atttttttct      1500
     atattaggtt tagttttaat aataaaatga aaacataatt atgttaataa ataaatgaaa      1560
     attgttatac aaaaagaagt attgcattaa gtcttctata ttaaatacaa tatacatgta      1620
     aacttagaaa taggggtttg tttgcaagtg tacgcagagt tctgcgagca agtgtatatg      1680
//
ID   Mariner-1_DPe repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   14-MAR-2012 (Rel. 17.08, Created)
DT   14-MAR-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1295
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1379-1379 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           177..1241
FT                 /product="Mariner-1_DPe_1p"
FT                 /translation="MEISREGFRWIIFHNFRRGLSQQECVDELSSLYGEKA
FT                 PSKTTXYRWFAEFNRGRSSVADESREGRPKSVVVPQNIDGVRELIVQDRHV
FT                 TYREIEASLHISSTSIRSILHEHLVVKKVCSRWIPHNLSIAQKKARVDWSK
FT                 EMLKKFDRGASKDVYKIVTGDESWIYAYEPETKQQSTVWVFQDEQNPTKVV
FT                 RARSTSKQMVACFFGRMGHVATVPLEKRRTVNSEWYTTICLPEVFGEIRKT
FT                 NCRARIILHHDNASSHTSRQTGEFLSSQNVELMTHPPYSPDLAPNDFFLFP
FT                 NIKKNCVVNVLRAPKKQLKSLKTMFWRCLKRSGKTAMTNGSSECKSVLIIR
FT                 GNILKNNKTIFI"
XX
SQ   Sequence 1295 BP; 402 A; 248 C; 277 G; 367 T; 1 other;
     tacgagggtt gctatttata tttcgggaat gggcaatact aaagccaata cgtaaaatct        60
     ggcaacgcca taataaactt tgtcattttt tagcatatat gtacgtacaa cgtttttatg       120
     tacaattggt ttttgttttg ttcacgatca gttaaaaaaa tcaatttggc aaaaaaatgg       180
     aaatttctcg agagggtttt cgttggatta tttttcacaa ctttcgacgt ggattatccc       240
     aacaagaatg tgttgatgaa cttagttctt tgtatggcga gaaagcacca tcaaaaacga       300
     cagnttatcg ctggtttgca gagtttaatc gtggtcgtag ttcagtcgct gacgaatccc       360
     gtgaaggtcg cccaaaatcg gttgttgtgc cacaaaacat cgatggtgtg cgtgaactga       420
     tagtgcaaga tcgacacgtg acatatcgtg agatagaggc atccttgcac attagttcca       480
     cttcaatacg ttccatttta catgaacact tagttgtaaa aaaggtttgc tctcgttgga       540
     taccccataa cttatcaatc gctcaaaaaa aggctcgcgt cgattggagt aaggaaatgc       600
     ttaaaaagtt cgaccgaggt gcttcaaaag atgtttataa aatcgtgaca ggtgatgaat       660
     catggatata tgcgtatgag ccggaaacta aacagcaatc gaccgtgtgg gtgtttcaag       720
     atgagcaaaa tccaacaaaa gttgttcgag cacgaagcac ttcgaagcaa atggtcgcct       780
     gtttcttcgg gagaatgggt catgtggcca ctgttccgct agagaaacgt aggactgtca       840
     attctgagtg gtacacgacc atttgtttgc cggaggtctt cggagaaatt cgcaaaacca       900
     actgccgagc acgaatcatt ctccatcatg acaatgcgag ctcgcacaca tctcgacaaa       960
     caggtgaatt tttaagcagt caaaacgtcg aattgatgac tcatcctccc tacagtcctg      1020
     acttggcacc caatgacttc tttttattcc ctaacataaa aaaaaactgc gtggtcaacg      1080
     ttttacgagc gccgaagaag cagttgaaga gtttaaaaac catgttttgg aggtgtctca      1140
     agaggagtgg aaaaactgct atgaccaatg gttcaagcga atgcaaaagt gtattgatca      1200
     tcagggggaa tattttgaaa aacaataaaa ccattttcat ttaaaaattg ttgttcttat      1260
     ttcctattcc cgaaatataa atagcaaccc tcgta                                 1295
//
ID   Mariner-1_Dro repbase;    DNA;    INV; 1311 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila genomes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_Dro.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RP   1-1311
RA   Kojima K.K. and Jurka J.;
RT   "Ancient DNA transposons from Drosophila.";
RL   Repbase Reports 12(4), 412-412 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. It is found from various Drosophila
CC   species including D.ananassae, D. biarmipes, and D. elegans. Thus
CC   it is an ancient Mariner element.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..1232
FT                 /product="Mariner-1_Dro_1p"
FT                 /note="transposase."
FT                 /translation="MTFHLLEVRLLRFKCQYVFVIGAKMSFEQRANIKFCF
FT                 KIGKTFTETFQLMKQVYGDDCLSRSRVHEWFQRFQSGREDINDDEHVGQPK
FT                 SVITENSIETVREFIKNQPKSSLKLMEIELNISKTSIYRILTEHLGLQKVC
FT                 ARFVPHKLTDVQKLLRIQHSKDIIKEAKKDPNFLYKIVTGDETWCFQYDPE
FT                 TKRQSAEWKAPDEPKPKKSRLEKSKVKTMLICFYDSKGIVHKEFVPPGQNV
FT                 NAVFYLAVLKRLVRRIRRVRPEYREDGSWRLLHDNAPSHRSTLVSDYLTKN
FT                 HILTINHSPYSPDMAPCDFYLFGKMHLPMKGKRYADVEAIQKACTGILAAI
FT                 PGNELKHSFDMLLDRAKRCIEAEGDYFE"
XX
SQ   Sequence 1311 BP; 395 A; 267 C; 283 G; 366 T; 0 other;
     caaggtgagt tccaaagtaa acaggacttt ttgaatctag cgccctctag tggcgccatc        60
     tatatgtcaa ctggtgcgtt agaatctgct atcgtttatc gacttccagt aaaaatttca       120
     tgacatttca tctattggaa gtgaggttat tgcgttttaa gtgtcagtat gtttttgtca       180
     tcggtgcgaa aatgagcttc gaacaaagag ccaacattaa attttgtttt aaaattggta       240
     aaacttttac cgaaacgttt caattgatga aacaagttta tggcgatgat tgcctatccc       300
     gtagcagagt gcacgagtgg tttcaacgtt ttcaaagtgg tcgtgaggac ataaatgacg       360
     atgaacatgt gggccaacca aaatccgtga tcaccgaaaa ttccatcgaa actgtgcgtg       420
     aattcataaa aaatcagccg aaatcatcat tgaaattaat ggaaatagaa ttgaacatct       480
     ccaaaacatc gatttatcgc attttgaccg aacatttggg cttacaaaag gtgtgtgcac       540
     ggtttgttcc gcacaaattg actgacgtcc aaaaattgct cagaattcaa cattcgaagg       600
     acatcattaa agaggcaaaa aaagacccga acttccttta caagattgtg actggtgacg       660
     aaacgtggtg ttttcaatat gatcccgaaa cgaaacgcca gagtgctgaa tggaaggcgc       720
     cggacgagcc gaaacccaaa aaatcgcgcc tggagaagtc aaaagtgaag acaatgctga       780
     tttgttttta tgattccaag ggtattgtcc acaaagaatt tgttccaccc ggccaaaacg       840
     ttaatgcggt attctacctt gcagttttga agcgtttggt gcgccgtatt cgacgtgttc       900
     ggcccgaata tcgcgaagat ggaagttggc gtttgttgca cgataatgcg ccgtctcatc       960
     gatcgacgct tgtgtccgac tatttgacca aaaatcacat tttaaccatc aaccactccc      1020
     cgtattcacc tgatatggca ccgtgcgact tctacctttt cggaaaaatg catttgccga      1080
     tgaaaggaaa gcgttatgca gacgtagagg ccattcaaaa ggcttgcacc ggcatactgg      1140
     cggccatacc gggcaacgag ctaaaacact cgttcgacat gcttttggac cgtgcaaaac      1200
     gctgtattga agcagaagga gactattttg aataaaataa attgattttg ccgaaaaaac      1260
     tatttgttct gtcttttttt taaagtcctg tttactttgg aactcacctt g               1311
//
ID   Mariner-1_DSim repbase;    DNA;    INV; 1661 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 17.08, Created)
DT   08-NOV-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from fruit fly, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1661
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(8), 1384-1384 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 26-bp TIRs. TA TSDs. It is ~93%
CC   identical to TC1_DM.
XX
FH   Key           Location/Qualifiers
FT   CDS           468..1142
FT                 /product="Mariner-1_DSim_1p"
FT                 /note="transposase."
FT                 /translation="MIRNALLFVENNEKRGRKPSMSNVEIKRLVRQSKKEP
FT                 FKPVTELKKELQIAANVEKVRKHLRQNNHNVCSPRKVPLLTVKHVAKRIEY
FT                 AKIRKDWPVEKWRHILWSDESKIGFFGWKGSRSYVRRPPRTENNPRFTFKT
FT                 VMHWGSNIMVWACFSYYGVDPIHMIQGIMDQHIYTDILENVMALYAEDEMP
FT                 FFWTFQQDNDPKHTRKKARKWFEQKSIRVMISHPT"
XX
SQ   Sequence 1661 BP; 536 A; 278 C; 359 G; 487 T; 1 other;
     cagctgcggt taaaataata gcactactgc aggtggaaag ttgatttcct aaaaaaaggt        60
     attgaatgtt tatttttttt aaagtctgat tgcatgaata ataagtacca tatgttgtct       120
     ctctaagcaa gaaattttga ctctctcaat gtaacggttc tttttgtttt tgggcacttt       180
     ctgcaaaagg gcgctaaatg aggcggtaac aaaaatagca ctgaccacgt ttttgctgaa       240
     taaaattaat aggagtgatt gctttgggtt ttttttcgac atattttgaa aaaaggagtt       300
     gcattaaagg ttttaattga atttttttca aaagaagacc aaaaattctc tagttatggg       360
     tcggggaaag cattttaccg tcgaaataag gaatttgatt aaaaacatga tctgtgaagg       420
     taaaacctac gctaaaatga gacggttttt tttgtttttc aaacaatatg atccgcaacg       480
     cactgctgtt tgtcgaaaat aacgaaaaac gtggaagaaa gccctctatg tccaatgtgg       540
     agatcaagcg cttggttcgg caaagcaaga aggagccttt taagccggtg acggaactga       600
     agaaggagct tcagatagct gcaaacgtgg aaaaagttcg caaacactta agacaaaaca       660
     accataatgt gtgcagtccc agaaaagtcc cgcttttgac tgtgaagcat gtggcaaagc       720
     gaatcgaata tgccaagata cgcaaggact ggcctgtgga gaagtggcgc cacattttgt       780
     ggtcagatga gagcaaaatt gggttttttg gttggaaagg ctctcggtct tatgttcggc       840
     gtccaccacg aactgaaaat aatcctcgct tcacctttaa gacggtaatg cactggggat       900
     caaacatcat ggtatgggcg tgcttttcat actatggagt agatccgatt catatgattc       960
     aaggcatcat ggatcagcac atttacacag atatcctgga aaatgtgatg gcgctatatg      1020
     ccgaggatga aatgccgttt ttttggacat ttcaacagga taacgaccca aaacacacga      1080
     ggaagaaggc tcgaaagtgg tttgagcaga aatcgatccg agtaatgatc agtcacccga      1140
     cttgaatcca atcgaaaaac tttgtgcgga cgtgaaaaaa aggtttctga agccaagccc      1200
     aaccataacg agaaactttg gattcatggg ggatcgagga tcaaggattc atggagcaaa      1260
     attcctcaaa aacggtacca ggacttggtg gactccatgc caagaggatg cgcagctgtc      1320
     attgcctaca atggtcacgc aaccaaatat taagattctt taaacatagt tcttaagata      1380
     taatccattt gttgaactct tattttattt ttttagttag ttttagcaaa atacgagaaa      1440
     cagtgctatt tttgttaccg cctaaatttg gaggtttttc tttgttttac caattatttt      1500
     taaaatatcc attagatctg ttaccaattt tattatttca attgaaaatc attgtagtat      1560
     ttaagattag tggaaaaaat tttgaaaaaa tktcagaaaa tagagaaacg atggggcaaa      1620
     cacgaaatgt gcttttggtg ctattattgt taccgcaact g                          1661
//
ID   Mariner-1_DSuz repbase;    DNA;    INV; 2659 BP.
XX
AC   .
XX
DT   09-JUN-2021 (Rel. 27.01, Created)
DT   09-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2659
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 131-131 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. 26-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           386..1915
FT                 /product="Mariner-1_DSuz_1p"
FT                 /translation="MNQYLWGYMNHLSKFDFLNFPSQAAKMVRNYKRKTQT
FT                 GLTSSATMKSALRDHLEKGYGIRQAAKVHNIPYPTFRRYVMKIKEGQETKL
FT                 EADFKQRQVFTEQQEKELCEYLVRSSQMGFGLSSVECRKLAFELGLKNDIK
FT                 MPRQWKENETAGKDWFHSFRKRNPDITLRKPENCSLTRATSFNAHNVKIFY
FT                 DNLQKVYDREPRFSDPSNVFNLDETATTTVPTKTPNVIAAKNTKQVSQATS
FT                 GEKGVLVTTCCIINAAGGFLPPAMVFPRVKFVPKMLKNGIPNTLGLANKTG
FT                 WMNAELFEKTLEHFIKYSNSSLTSPKLLVLDNHESHLSIRALDLAKRNGIT
FT                 LLTLPPHTSHKLQPLDITCYYPFKAAYNRSLDAMIKSLKQPLTIYEVAECV
FT                 HSAHDAAITPKNIKSGFEKSGIFPFNPQKFSASDFLGSDYTNRDMNTENTH
FT                 NQNSQQMAIVQDENVLLNTPARNNNSVESAMSPNIDLDDVPLTIRMRGFLP
FT                 GKSPEDLRGYILEN"
XX
SQ   Sequence 2659 BP; 881 A; 539 C; 516 G; 723 T; 0 other;
     ggggagagtg gggataggtg aaccacgggg atagatgaac cactacaaat atttcacctt        60
     ctgtcatgat tttgtgcgcc atctatatgt gtgttgctta cttagtcgat atcctaacct       120
     cacacgcacg cacagtcgcg tcaaacgatt gttgtcgttt ttatcgctaa tcgaagtttg       180
     tattcgccgt ttgcagcttc aattgtaacc taacgttttc ttggaaaaat tttatcgtgc       240
     ttcgccagtg gcattgaact tcataaaatt gtattttatc gtaagtagac gcaaattatg       300
     atatttccac ggatagctca cgcagtttaa atatttcatg ttttcttcaa atcacttcta       360
     attggctaat gacttgtggg gatacatgaa ccagtacttg tggggataca tgaaccacct       420
     ttccaaattt gattttctaa attttccatc gcaggctgcc aaaatggtga gaaactacaa       480
     acgcaaaacc caaacaggct tgacttccag tgcaactatg aaatccgcat tacgtgatca       540
     tctggagaag gggtatggca ttcgccaagc agcaaaagta cacaacattc catatcctac       600
     gtttcgccgc tacgtcatga agataaaaga aggacaggaa acaaagctgg aggctgattt       660
     taaacaacgt caagttttca ccgaacagca ggagaaggaa ttgtgtgagt acctcgtacg       720
     ctcttcacaa atgggcttcg gactcagcag cgtagaatgt cgaaagctcg ctttcgagct       780
     gggcttaaaa aatgacatca aaatgccacg tcagtggaaa gagaacgaaa cagcaggtaa       840
     agactggttt cattcatttc gcaaaagaaa tccagacatt actcttcgga aaccggagaa       900
     ctgcagcctg actagagcta cgtcatttaa tgctcataac gtcaagattt tttacgacaa       960
     tttacaaaag gtctacgatc gggagcccag attctccgac ccttccaacg ttttcaatct      1020
     agacgaaaca gcaacaacaa ctgttccaac aaaaactcca aacgtcattg ctgccaaaaa      1080
     tacaaagcaa gtttcgcaag cgacaagtgg agaaaaaggt gtactcgtta cgacatgttg      1140
     tatcatcaac gctgctggag gtttcttgcc gcctgcgatg gttttcccac gtgtaaaatt      1200
     tgttcccaaa atgctcaaga acggtatacc aaatacgctt ggcctagcaa ataagacagg      1260
     atggatgaat gcagagctat tcgaaaaaac gttggagcat ttcataaaat attcgaactc      1320
     atcactgaca agtccaaagt tactggtttt ggataaccac gaaagtcact tatctatccg      1380
     ggctttggat ttagcgaaac ggaatggcat cacacttttg actctgccac ctcacacgtc      1440
     tcataaattg caaccattgg acattacttg ctattatcca ttcaaagctg cctacaaccg      1500
     atctctggat gcaatgatca aatctttgaa gcaaccacta acaatttacg aagttgcaga      1560
     atgtgtgcat tccgcacacg atgctgcgat tactccgaaa aatatcaaat caggttttga      1620
     aaagagtgga atttttccct tcaacccaca aaagttttct gcatctgact ttcttgggag      1680
     tgattacact aacagagaca tgaacacaga aaacactcac aatcaaaatt ctcaacaaat      1740
     ggcaatcgta caagatgaaa atgtgctcct gaacactcct gcgaggaaca ataactcagt      1800
     cgagtccgca atgtctccca atattgacct ggatgatgtt cctttgacga tcagaatgcg      1860
     tgggttcttg ccaggaaaat cgccagagga cttacgaggg tacatattag aaaattaaac      1920
     tgcaaatatt aaacggttct cctgggaatg cagacgggaa attaaattgt aggtaaatct      1980
     tgtctttaag atctgatatc tttgattatg ttttgctagg tacatgttat gagttagtgt      2040
     ctgggatttg gggtgctcaa taatcccatt aaataaaagt actgtgctgt gcctgcttta      2100
     aatttaacac gcaggcgaga aaatgtatat tttatttaag gtatctttac caaaggctaa      2160
     accacgaaaa cagacgactc ggggaagaaa acgaggaagg agtatcattg ctacagactc      2220
     accgcagaaa aattgatcgc ggaaaaacac aatcagaaaa ctcaagaaaa ccttcgaaaa      2280
     aagaaagaat aaaaacaaaa ataagaataa atagcaatat tgtaatgttt gatttcatgc      2340
     tgtaaaggtg caatgtttat attcgaacag aaagaaggca tgcacaaaga aataaattac      2400
     acttttttta tacaattgta gtttttgtgt tatcctgata ggtggttcaa ctatccccat      2460
     agggacctga accatttgag acaaaaattt ggaaagcaaa taaactttac aaaacaaaag      2520
     atagtatttt tgcataatac ttaatattcc aaggaatgtg ggctctttta gatttctata      2580
     tacagcagac ccttacgtcg aattgttcag acataataat gttaataaaa aaaagtggtt      2640
     cacctatccc cactctccc                                                   2659
//
ID   Mariner-1_DT repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   17-OCT-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA trotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1639
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1436-1436 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. 214-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           393..1394
FT                 /product="Mariner-1_DT_1p"
FT                 /translation="MKKLSRGTENSIVSMTKSGCSTRTIAEKLKISQSVVV
FT                 KVKKRQNVCSETVLNGRRRLLTDSDARLMMSNMRKDKLLTPKEASKELNKT
FT                 VSRWTARRALGRIGYIASVKKNKPALSEKNVRARLKFAKTHKNWTIEDWKR
FT                 VIWSDESKFNRFQSDGKQYYWHRPGDKLQRHHVKQTVKHGGGNIMAWGCFT
FT                 WWHVGPLHKIDGIMLKEDYLNILKTRLPNFLDKTAYPEGEITFQQDGDPKH
FT                 TAKIVKEWLAKQKFKVMEWPAQSPDLNPIENLWSIVKRRLGQYQSAPCNLH
FT                 DLWRRVEIEWNQIPKEILQNLVESMPKRIKNVIDNKGLWTKY"
XX
SQ   Sequence 1639 BP; 550 A; 284 C; 322 G; 483 T; 0 other;
     cagtggggag caaaagtgat tccatgttca gaatatgcat gtttgacaga tcataaaacg        60
     taaaccaatg aagcaaatga aacaaacttt ttttttctcg attccttatt taatttgtaa       120
     gaaataaact taaatacctc aataatacaa aaagaaatgt aagagagaaa attaaaaaac       180
     aaaaacagaa ggcatgtact cagttttgca ccttccgtta ttcgcacttg tttttgctct       240
     ccctattttc ttatcatcaa tacttgcaga tttaccgtgt tatgtctttt tcacttatta       300
     ttcgttttca taatgaggaa tatcgcacat ttcttatagt tcaaagtaga tttaatgaat       360
     taagaaatta gtctccaatt tatatctgta aaatgaagaa attatcgcga ggtaccgaaa       420
     atagtattgt ttccatgact aaaagtggtt gttcgacacg cacaattgct gagaagctga       480
     aaattagtca gtcagtggtg gtcaaggtga aaaagagaca aaatgtttgt tccgaaaccg       540
     tattgaatgg tcgccgccgc cttctaacgg actctgacgc tcgacttatg atgtccaaca       600
     tgaggaagga taagctttta acaccaaaag aggcttctaa ggagttaaat aaaaccgtta       660
     gtcgatggac agccagaaga gcactgggta gaattggata tatcgcttct gttaaaaaaa       720
     ataaaccagc tctatccgag aaaaatgtta gagctcggtt aaaatttgca aagacacaca       780
     aaaactggac tatagaagac tggaaacgtg ttatctggtc ggacgaatcc aagtttaacc       840
     gtttccagtc ggatggcaag cagtattatt ggcataggcc cggtgacaag cttcagagac       900
     atcatgtaaa gcaaaccgta aagcatggag gaggaaatat aatggcttgg gggtgcttca       960
     catggtggca cgttgggccg ttgcacaaaa ttgatgggat aatgctaaaa gaggactatt      1020
     taaacatttt aaaaacccgt cttcccaatt ttctcgataa gactgcctat cctgaaggag      1080
     aaatcacttt ccaacaggat ggggatccca agcacacggc gaaaattgta aaagaatggt      1140
     tggcaaaaca aaagtttaag gtcatggagt ggccagctca aagtcccgac ctcaatccaa      1200
     ttgaaaactt atggtcaatt gtgaagcgac ggctcgggca gtatcaatcg gccccatgca      1260
     acctccacga tctctggaga cgcgtggaga ttgaatggaa ccaaattccg aaagaaattt      1320
     tacagaattt agttgagagt atgccaaagc gcataaaaaa tgtaatagac aataagggtc      1380
     tttggaccaa atattaattt gatatttttt tacaattttt cataaaaggt gcaaaactga      1440
     gtacatgcct tctgtttttg ttttttaatt ttctctctta catttctttt tgtattattg      1500
     aggtatttaa gtttatttct tacaaattaa ataaggaatc gagaaaaaaa aagtttgttt      1560
     catttgcttc attggtttac gttttatgat ctgtcaaaca tgcatattct gaacatggaa      1620
     tcacttttgc tccccactg                                                   1639
//
ID   Mariner-1_DVi repbase;    DNA;    INV; 1703 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   A Mariner/Tc1 DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1703
RA   Jurka J.;
RT   "DNA transposons from Drosophila virilis.";
RL   Repbase Reports 12(9), 1736-1736 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           212..1414
FT                 /product="Mariner-1_DVi_1p"
FT                 /translation="MLSIKCFYSYGKLFCRSLLGDPVRFGPMRFGFSCVFD
FT                 FSCHFLLQFITFCFNFMKNKMPGKRTTFEVAQLVYYNHQMGRQVSELADMF
FT                 NLSKATIYNILNRANKEDRLEAKPVCGRPCKISDRDKRKILRKIEKNPQIS
FT                 LRDIAQEFKEESGVDVSHETVRKLLNSNDYTSRVARKKPLLSAANILKRLS
FT                 FAQVHVNSSNDFWSNVIFCDESKMMLFYNDGPSRVWRKPLTALENRNIIPT
FT                 VKFGKLSVMVWGCISSKGVGDLTFIENTMDARQYLSILQTHLVSSAQKFGF
FT                 YEDNKPIFKFYQDNDPKHKAHMVRVWLLYNCGKVLDTPPQSPDMNPIENVW
FT                 SYLKKKVAKRSPKSKTDLKAAVLEEWQKIPETYIQNLIVSMKRRLQAVCDA
FT                 NGSHTKY"
XX
SQ   Sequence 1703 BP; 595 A; 265 C; 310 G; 533 T; 0 other;
     tacagtatgt caataaagtg tttttactaa caaaaaaaaa ctaatttttt gggtttagtt        60
     gaaaataaat gtacctaaaa gtgagaattt tttttcaatt ataatttatt tcgattctat       120
     atttctccta gaacttaatg gcaaaaagaa ttgttaaata acattaccca aacattttat       180
     aaaattaaaa aactaaaaac attcacattt tatgctgtca ataaagtgtt tttacagcta       240
     cggtaaattg ttttgccgtt ctcttttggg tgatcccgtt agatttgggc ccatgcgttt       300
     tggcttctct tgtgtcttcg acttttcttg tcattttcta ttgcaattta taacgttttg       360
     ctttaatttt atgaaaaata aaatgccagg aaaaagaaca acttttgaag tcgctcagct       420
     ggtgtattat aaccatcaga tgggacgtca agtctcggaa ctggctgata tgtttaattt       480
     atcaaaagca acgatataca acatattaaa cagagccaat aaggaagata ggctagaggc       540
     aaagccagta tgtggtcgac cctgcaaaat ttctgacaga gataagcgaa aaattctgag       600
     aaaaattgag aaaaatccac aaatttcgct tagggatatt gctcaggagt tcaaggaaga       660
     aagtggtgtt gatgtgtcac atgaaactgt ccgaaaatta ctgaattcca atgactacac       720
     atcacgagtt gccaggaaaa aacctctact atcggcggcg aatattttga agcggctatc       780
     gttcgctcaa gtccatgtaa atagttcgaa cgatttttgg agtaacgtca tattctgtga       840
     cgaaagcaag atgatgctat tctacaacga tgggccatcc agagtctgga gaaagccact       900
     aacagcgttg gaaaaccgca atattattcc aaccgttaaa ttcggaaaac tatcagtgat       960
     ggtgtggggg tgtatttcga gcaagggtgt aggagatttg accttcattg agaataccat      1020
     ggatgctaga caatatctga gcattttaca gacacatctc gtcagtagtg cacagaaatt      1080
     tggattctat gaggacaata agccaatttt taaattttac caggacaatg acccgaagca      1140
     taaagctcat atggtaagag tttggctgtt gtacaactgt ggaaaggtgt tagacactcc      1200
     accacaaagt ccagatatga atccaataga aaatgtgtgg tcatatttga aaaaaaaagt      1260
     cgcaaagcgg agtccaaaat caaaaactga tttaaaagct gctgtactgg aagaatggca      1320
     gaagattcca gaaacataca tacaaaacct tattgtttca atgaaacggc gattgcaggc      1380
     tgtatgtgac gctaatggca gccacacaaa gtattaaaaa aaaatattcc tgttttttta      1440
     acattgttat ttagtaataa agtttcgtgt aaaaacactt tattgacagc ataaaatttg      1500
     aatgttttta gttttttaat tttataaaat gtttgggtaa tgttatttaa caattctttt      1560
     tgccattaag ttctaggaaa aatatagaat cgaaataaat tagaattgaa aaaaaattct      1620
     cacttttagg tacatttatt ttcaactaaa cccaaaaaat tagttttttt tcgttagtca      1680
     aaacacttta ttgacatact gta                                              1703
//
ID   Mariner-1_DW repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   14-SEP-2011 (Rel. 17.09, Created)
DT   14-SEP-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1642
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1740-1740 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. Low-copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..1385
FT                 /product="Mariner-1_DW_1p"
FT                 /translation="MQIRQRRSGNNRKGRCKTKTTCIDSLLTIPIFRFFIN
FT                 NCILIYSYFGELFFAFDLFIFVVNFEEVKSFVICTGYLIVAKLIENSRMKK
FT                 ISKPVEDSIVCLSERGSSSREIAKSLSISQATVIRVLKRREINNQNTSNGR
FT                 PRLITDGDARLMISQIKKDGHMTPKDAAKAIGKPVSESTARRALRNIGYTX
FT                 IVKKKKPALSEKNVKARLQFAKMHRNWTIEDWKKVIWSDESKFNRYQSDGK
FT                 EYCWIRPGETIQRRHVRETVKHGGGHVMAWGCFTWWSSAKLVKINGIMRKE
FT                 DYLNILQTNLGNFIDRCAYGTTDLTFQQDNDPKHTARIVQDWLSNQEFKLM
FT                 KWPAQSPDLNPIENLWSIVKRRLGQYKTAPTNLESLWQRVEEEWTKIPQEI
FT                 FHNLVESMPSRISAVIKHKGLWTKY"
XX
SQ   Sequence 1642 BP; 582 A; 269 C; 334 G; 455 T; 2 other;
     tacagtggcc gtcaaaactg attcaatgtt tgcaactctt gcagttaaac agctgctgta        60
     tgaatataga gcaagcaaat gaaacaaaac ttatttttac agttacttag attattctta       120
     ataaaataat gcaaattaga caacgaagga gcggaaacaa cagaaaaggg agatgtaaaa       180
     caaaaacaac atgcattgac tcacttttga ctattcctat ttttaggttc tttatcaata       240
     actgcatctt aatttacagt tattttgggg aattgttttt cgcttttgat ttattcatat       300
     ttgtagtcaa ttttgaagaa gtaaagtcat ttgtaatttg caccgggtac ctaatagttg       360
     caaaattgat tgaaaactcg agaatgaaaa aaatttctaa acccgttgag gacagtatag       420
     tgtgcctttc agaaagagga tcctcgtcgc gagaaatagc caaatccctc tctataagtc       480
     aagcgacagt cattagagta ttaaaacggc gtgaaatcaa taaccaaaat acatccaacg       540
     gacgccctcg actgattact gatggtgatg cacgcttaat gatcagccaa attaaaaaag       600
     atggtcatat gacgcccaag gatgctgcca aagcaattgg taagccggtt agtgaatcna       660
     ctgcaagaag ggcacttcga aatatcggct acactscgat tgtaaagaaa aaaaagccag       720
     cactgtccga gaaaaacgtt aaggcacgtc tgcaatttgc caaaatgcat cggaattgga       780
     ccattgagga ctggaagaag gttatttggt cagacgagtc caaatttaac cgatatcagt       840
     ccgatggaaa ggaatactgc tggataaggc ccggagaaac cattcaaagg cgacatgtca       900
     gagaaactgt gaaacacgga ggcgggcacg ttatggcatg gggatgtttt acttggtgga       960
     gttctgcaaa attagtcaaa attaatggaa taatgcgaaa ggaagattac ttaaacattc      1020
     tgcagaccaa tcttggcaat tttattgaca gatgcgctta tggtacaaca gatcttactt      1080
     ttcagcaaga taatgaccct aagcatacag ctagaattgt ccaagattgg ttatctaacc      1140
     aagaattcaa gctgatgaag tggccagcac aaagtcctga cctcaatcca attgagaatt      1200
     tatggtcaat tgtgaaaaga cggctgggac aatataaaac agcgccaaca aacctggaga      1260
     gcttatggca acgcgtggag gaagagtgga caaagattcc tcaggaaatt tttcacaatc      1320
     ttgtggaaag tatgccctct cgaatctctg cagtaataaa acataaggga ctttggacaa      1380
     aatattgaaa attagaaaag aaaaaaaagt ttaaaaaatg tttgaaaaaa gtcaaaactg      1440
     agtcaatggt tattattttt gtttattaat ttttgctgag aagcttgaac aatatcgaat      1500
     tattttttta tatggatttg ttaagaactt tattagaaat aaagtaaaaa aaaaattggt      1560
     tggctttggg ttgtttttgt ttattctgtg aacgctcaaa cgtaaaattg caaacattga      1620
     atcacttttg acggccactg ta                                               1642
//
ID   Mariner-1_FoCa repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   30-OCT-2019 (Rel. 24.12, Created)
DT   30-OCT-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1284
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2484-2484 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. TA TSDs. 143-bp TIRs.
XX
SQ   Sequence 1284 BP; 427 A; 234 C; 254 G; 369 T; 0 other;
     cgtaggtgtt ttattattaa ttttcaaaag gtatgttccg cactgtttct gaccaaaatt        60
     ttgatgaaat aacaaacttc aaatacattt aggaggctgt gatttttttc agctctgtgg       120
     gttaacataa acactagcaa taaatcggca aactttacct cgacggaaaa aatgctagat       180
     ttgcaaatta aatatcgtag tgtgatttaa tttttaatgc tggatcggca atacgtgtcg       240
     cagatttatg gttgaatcct taaaatttac gatgaagact gcccaacaca aaacacaaat       300
     tcaattgggt caataatttt aaatgatggc gaaacgaggt ctcgggcaaa aagtcgccag       360
     gacgctcaaa atccgtttct tccacagaaa ggctccggaa actagaggaa caaataatga       420
     gagatccgcg attgaaactg tcctatttag cagatgagat gggtgtttca aaaccagcaa       480
     tttgttccat gttaactgaa gacttaggta tgaaaatggt ttccgcccgt tgggtaccaa       540
     aattgctttc agcatctcaa aaacaggatc gagtcgactt ttgcaatgcc aattttaacc       600
     tattaaatga agacttgaac ctgctcaata ttttattagt tgcatatggt acttgggttt       660
     actattatga cccggtgacc aaataataat tccctcaatg gaagcacgag gggttgccac       720
     cgcccgtgaa ttgaaaagtg caaaaatctg acaaaaaaat gatgatgacc attttcaagg       780
     ataccaaagg tcccctcctt ataaaattta ttgctgtaaa tactacaata aatggggccg       840
     tgtatgcagg aaccccgaag gagctgcgtc ctccggttga aaagaaacgt ggggtcaaaa       900
     taaagagttg gccttttttt agacgacaac gcgccacctc atacctggct ttttgcgagg       960
     gttagtgcag acgaaaatcg ctttacctgc acaaaccaca ccccgtgcag tccggacttg      1020
     acccttagtg attattattc gtttcgaaac ttaaagaaaa acatcagggg aaaacggttt      1080
     tcggatgata atgaaatcaa gtcgtaaatt ttggcatatt ttcgaggtaa attttaatga      1140
     gttattgcta gtgttaatgt taacctacag aactgaaaaa aatcacagca ttctaaaagt      1200
     atttgaagtt tgttatttca tcaaaagttt ggtcagaaac agtgtggaac atacattttg      1260
     aaaattaata ataaaacacc cacg                                             1284
//
ID   Mariner-1_Hmel repbase;    DNA;    INV; 1590 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   Mariner-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1590
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           283..1224
FT                 /product="Mariner-1_Hmel_1p"
FT                 /translation="SFXNXMPSIRRDMDLPTIIRAVTLIQEGHSQRSVALQ
FT                 LGYSRRAVQNGWNRFQETGTASSRRVSGRIRSTTAQEDRYVLLTARRERFI
FT                 TAHCLQNRLRQVTGTRVSDQTIRKWLHEDQQFSRRRILRISLTSAHRANRL
FT                 AHARQYLALDISDWSTVLFTDESKVIFFNDDRRISVWRREGDRFSDACILE
FT                 SDRFGGPNVMVWRGISLSGTIELIILNGGTVTAQRYIEEVIRPHVVPFAQR
FT                 IGARFKLMHDNARTHTARATKTALEEADIDVLPWSANSPDLKPMEYMWDLL
FT                 KRSDRSTDRPVHNEPQLIEVLK"
XX
SQ   Sequence 1590 BP; 507 A; 295 C; 341 G; 443 T; 4 other;
     ctagtcaaaa caaaataagg gccactacgt atttttgcac tttgggttaa tttattcaca        60
     tgaatgcaat cttgagtggt tgatacttat ggtacgttca tcttaagtgt tgacaagttc       120
     tatttgagta tactgccagc aaaaaattgt aaaagtaggt agatttagag atttattgga       180
     accacttgat tttaccctta tttaagttga tagttaaatt cagtcaaagt ttggaactag       240
     tcgtgtatar ttcaaatawt gtttaactat cgtgttaatt gatcttttgy gaacwctatg       300
     ccaagtattc gacgagatat ggacttgcca accataatca gagctgtaac tttaattcaa       360
     gaaggacatt cacagcgttc tgtagctcta cagctcggct attcacgaag agcggtccaa       420
     aatggttgga accgttttca agagacggga acggcatcca gtagacgagt atcaggcaga       480
     attagatcca ccaccgcgca agaagaccgc tatgttctct tgactgcgcg aagagagcgt       540
     tttatcaccg ctcactgctt acaaaatcgc ttgcgacaag tcacaggtac ccgcgttagt       600
     gatcaaacaa ttaggaaatg gttgcacgaa gaccagcagt tctccagaag acgaatattg       660
     cgaatttcac taacaagtgc tcatcgtgca aaccgattag cgcatgcaag gcaatatctt       720
     gccttggaca taagtgactg gagcacagtg ttgtttactg atgagagtaa agtaatattt       780
     tttaatgatg ataggcgcat tagtgtttgg agacgtgaag gtgaccgatt ttcagatgct       840
     tgcatcctag aaagtgacag attcgggggt cccaatgtga tggtgtggag aggcatcagt       900
     ctatcgggta caattgaact aataatccta aacggaggca ctgtaacagc tcagcgatac       960
     attgaagagg ttatcagacc tcatgtggtg ccttttgctc agagaattgg tgcaagattc      1020
     aagctgatgc acgacaatgc acgcacacac accgctcgag ccaccaaaac agctctagag      1080
     gaggctgata ttgatgtgtt accttggtct gccaacagtc cagacctcaa accgatggaa      1140
     tacatgtggg atctactcaa acgaagcgat cgaagtactg accggcccgt acataacgag      1200
     ccacagctta ttgaagtgct gaaataaagc tggcagcaaa ttcctcaaga aactgtacga      1260
     aacctgattg aaagtgttcc ttacaggcct caggattgtg tacaaaaatg aggaggacac      1320
     acacgatact gaagacaaca aaaaataaag ctttagaaat cctaaaagtt cttgaaagct      1380
     ttatgagcgg gagtgaattt tttgtcaaaa ttgcatagtt aattgaaaaa attctaagtt      1440
     aattttattg gatcgatttt aataaaattt taagttaatt acattagaaa atggtaaagc      1500
     taatgaactt catcattttc taatacctaa gtcccagtaa cacataaata tacttgaaaa      1560
     ttgcagtggc ccttattttg ttttgagtag                                       1590
//
ID   Mariner-1_HMM repbase;    DNA;    INV; 1322 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1322
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2641-2641 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. TA TSD. 77bp TIR. The consensus is
CC   ~96% identical to that of Mariner-1_DBi from Drosophila
CC   biarmipes, indicating a recent horizontal transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1265
FT                 /product="Mariner-1_HMM_1p"
FT                 /note="HTH and DDE transposase."
FT                 /translation="MDQRICIKFCVKNKIKCSETLKMLTVAYGETVLSKKN
FT                 VYKWYKLFQDGREDANDEPRSGRPSTSTTDENVQAVKKIVLENRRITIREV
FT                 AEDVGISLGSCHEIFSNVLGMRRVSAKFVPKLLNFDQKNRRMSIAQELLND
FT                 VNDDPDLLKRVITGDESWVYGYDIETKVQSSQWKSPDEPRPKKARQVRSNV
FT                 KVLLTVFFDYHGVVHQEFLPYGRTVNKQYYLEVMRRLREAIRRKRPELWKN
FT                 NSWLLHHDNAPAHSSLLVRDFLAKNNTTIMPQPPYSPDLAPCDFFLFPKLK
FT                 RPMKGRRFATIEEIKTASLEELKAIPKSAYEKCFDDWKNRWHKCIVSEGDY
FT                 FEGDNINIDK"
XX
SQ   Sequence 1322 BP; 412 A; 247 C; 292 G; 371 T; 0 other;
     cgaggtgtgt tcaaaaagta aggtgacttt tcaaatttgg cgggcaacgt actttcgatt        60
     atcgattttt ttattttgtt atgttggtac actcttcccg aacatctgta ccaagtttca       120
     agtgtatagc attttttgtt tggttgggag aggcgtaaag gttataagtg ttttgcgtgc       180
     tcggcgattt cttgctatcg aaaaatatgg atcaaaggat ttgcatcaaa ttttgtgtaa       240
     aaaataaaat aaagtgctcc gaaacactta aaatgttgac agtggcatac ggtgaaactg       300
     ttctgagtaa aaaaaatgtt tacaagtggt acaaactctt ccaagatggc cgggaagatg       360
     ccaatgacga gcctcgctct ggacgcccaa gcacgtcaac aactgatgaa aacgttcaag       420
     cagtgaagaa aattgttctg gaaaatcgtc gaatcactat cagagaagtt gctgaggatg       480
     ttggtatatc gcttggctcg tgccatgaaa ttttttctaa cgttttgggc atgagacgtg       540
     tgtcagcgaa gtttgttccg aaattgctaa attttgacca aaagaaccgt cgcatgagca       600
     tcgctcaaga actgttgaat gacgtcaacg acgacccaga tttactcaaa agggtcataa       660
     ctggtgacga atcatgggta tatggttatg atatcgaaac caaagtccaa tcgtcccaat       720
     ggaagagccc agatgagcca agaccgaaaa aagcacgcca agttcgatca aatgtcaaag       780
     ttttgctcac tgttttcttc gattaccacg gcgtggtgca tcaggagttc ttaccatatg       840
     gacgtacggt caataaacag tattatcttg aagttatgcg ccgtttgcga gaagcaatac       900
     gaagaaaacg tccggaattg tggaaaaaca attcatggct tttgcatcac gataatgccc       960
     ctgctcactc atctttgctg gtgagagatt ttttggccaa aaacaacacc acaatcatgc      1020
     ctcagccacc atattcaccg gatttggccc catgtgactt tttcttgttc ccaaaactaa      1080
     agagacctat gaaaggacgg agatttgcaa cgattgaaga gataaagact gcatcgctgg      1140
     aagagctcaa ggctataccg aaaagtgctt atgagaagtg ctttgacgat tggaaaaacc      1200
     gttggcataa gtgtattgta tctgaggggg attactttga aggggacaac ataaatattg      1260
     ataaataaat aaatattttt tcttaaaaat acaaagtcac cttacttttt gaacacacct      1320
     cg                                                                     1322
//
ID   Mariner-1_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   23-OCT-2011 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 841-841 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1208
FT                 /product="Mariner-1_HSal_1p"
FT                 /translation="MATDKVHIRHCILYEFQQGKNAARACESICSFLGEGV
FT                 VSYDVCAFWFKRFKSGNFSLIDKQRPGGPPKCDNDDLEQLLAENSAQTQKE
FT                 LAEQLGVTQQTISKRLHEMGKIQKEGKWVPHELTETNKNQRVAACLSLLNK
FT                 QRRKSFLWKIVTGDEKWILYDNPKRRKSWVNPGESSKSVAKPNRFGKKVLL
FT                 CIWWDIKGVLYYELLEPGETVTADCYQRQLICLSQELERKRPYTGKGERPV
FT                 KLLHDNARPHIASNTKDTIMSLGWDVLQHPAYSPDIAPSDYHLFRSMQHAL
FT                 SDMHFQSVDEIRKWLDDFIVSKDVTFFRDGIHQLPERWLKVIESNGEYFD"
XX
SQ   Sequence 1287 BP; 412 A; 259 C; 278 G; 338 T; 0 other;
     ttaggtgtac aaatgaataa tccaaattat tttaagcagt tatgaaatca attttaaatt        60
     gaatagattt tcccgctctt ttgtgattat gcaatgttga catatagcta ttaaaaagaa       120
     catatagttt ggcgaaaggc ccaacataac cttcaaaagt attcagttca gtacagtcga       180
     aaatggcaac agataaggtg catatccgac actgcattct ttacgaattc caacaaggaa       240
     aaaatgctgc aagagcgtgc gaatcgattt gttcctttct cggcgaaggt gttgtatcgt       300
     acgatgtgtg cgcattttgg tttaagcggt ttaaaagcgg taatttcagt ctaatcgaca       360
     aacaacgccc tggaggccct ccgaagtgcg ataatgatga tttggaacaa ctgctcgctg       420
     agaattcggc acaaacacaa aaagagcttg cagaacagtt gggagtaacg cagcaaacga       480
     tttccaaacg cctacatgag atgggaaaga tccagaaaga aggaaaatgg gttccgcatg       540
     aactcactga aaccaacaaa aatcaacgag tggcagcgtg tctttctctt ctcaataagc       600
     agcgtcgaaa gtctttcttg tggaaaatcg ttacgggcga tgagaaatgg atactctatg       660
     acaatccgaa acgcagaaag tcatgggtaa atcccggcga atcatcaaaa tcggtcgcaa       720
     aacccaatcg cttcggaaag aaggttcttc tctgcatttg gtgggatatc aagggcgtgc       780
     tttattatga gttgttggaa ccgggtgaaa cagttactgc ggactgctac caacgtcaat       840
     taatctgctt gagtcaagaa ttggaacgaa aacgcccgta tactggcaaa ggagaacgtc       900
     cagtgaaatt gttgcatgac aacgccaggc cacacattgc ttccaataca aaagacacca       960
     taatgagtct tggctgggac gtcttgcagc acccggcgta ttcaccagac attgctccat      1020
     ccgattatca cttgttccgg tcgatgcaac acgccttgtc cgatatgcac ttccaatcag      1080
     tggatgagat ccgaaaatgg cttgacgact ttatcgtgtc caaagacgta acatttttcc      1140
     gagatggaat tcatcagctg cctgaaagat ggcttaaagt tatagaaagc aacggcgaat      1200
     actttgattg aacaatttaa tttactttct tttaaaataa accttgaatg tagctgaaaa      1260
     aattggatta ttcatttgta cacctaa                                          1287
//
ID   Mariner-1_LHu repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   01-OCT-2011 (Rel. 19.02, Created)
DT   01-OCT-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1295
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 359-359 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. 27bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1218
FT                 /product="Mariner-1_LHu_1p"
FT                 /translation="MSNFVLTKQHLREVLIFCFNWKKSAAEAHRMLVEVYG
FT                 DTAPTDKSCREWFRRFKDGDFSVEDKPRSGQPKKFEDKELEALLEEDQSQT
FT                 QEELAGSLGVTQQAVSVRLRAMGMIQKLGNWVPYELKPRDVERRFFTCELL
FT                 IQRQQRKGFLHRIVTGDEKWIFYDNPKRKKYYAKPGQSLPSTSTSTPKPNI
FT                 HGSKIMLCIWWDQKGVVYYELLKPGDSITGDRYRLQLVRLSRALREKRPEY
FT                 EQRHDKVILLHDNARPHVAKVVKKYLETLKWDVLPHPPYSLDIAPSDYWLF
FT                 RKMQHDLAGHRFTSFAEIENWLQTWIASKDESFFRDGIRKLVERWEKVVAS
FT                 DGQYFN"
XX
SQ   Sequence 1295 BP; 391 A; 246 C; 301 G; 357 T; 0 other;
     ggagtacaaa ttagttcggt ccgttttcca aaagataact ctggctgttg tgaatggttc        60
     atagtgacag ctgattttgg cggtttcaga gaggttagac atctgctaat aatattcagt       120
     ttatatcgct ttgagtttca tacaaaaacc ttgattttta ctgtgttcga aatgtcgaat       180
     tttgtgctaa ccaagcagca tttgcgggag gttttaattt tctgctttaa ttggaagaaa       240
     agtgcagctg aagcccatcg aatgcttgtc gaagtttatg gtgacactgc tccaactgat       300
     aaatcatgta gggaatggtt tcgacgtttc aaggatggag atttcagcgt tgaagacaag       360
     cctcgctctg gacagccaaa aaaattcgaa gacaaagaat tagaggcatt actcgaagaa       420
     gatcagagtc aaacgcaaga ggagcttgca ggatcattgg gagtaactca acaagccgtt       480
     tctgtacgat tgagagccat gggaatgata caaaaactag gaaattgggt gccttatgaa       540
     ctcaaaccga gagacgttga aaggcgattt ttcacttgcg agctgctgat tcaaaggcaa       600
     caaagaaaag gttttttgca tcggattgtg actggagatg agaagtggat attctacgac       660
     aaccccaaga ggaaaaaata ctacgctaag cccggtcaat cgttgccatc gacctcaaca       720
     tcaacaccaa agccgaacat tcatggttcg aagatcatgc tctgtatctg gtgggaccaa       780
     aagggtgttg tttactatga gctgctgaaa cctggcgatt ccattacggg cgatcggtat       840
     cggcttcaat tggttcgttt gagccgtgca ttgcgagaaa aacggccgga atacgagcaa       900
     agacatgata aagttattct tcttcatgac aacgctcggc ctcatgtcgc aaaagtcgta       960
     aaaaaatatt tggaaacgct caaatgggat gttttaccgc acccgccgta ttctctggac      1020
     attgctcctt ctgattactg gttgttccga aagatgcagc acgatttggc aggtcaccgg      1080
     ttcacttctt tcgcagaaat cgaaaattgg ctccaaactt ggatcgcctc caaagacgag      1140
     tcattttttc gagatggaat tcgaaaattg gttgagagat gggaaaaagt agtagccagc      1200
     gatggacaat actttaatta atctgttcat tcattttgtt ttgaaataaa tgcatttttg      1260
     aacacaaaaa aacggaccga actaatttgt actcc                                 1295
//
ID   Mariner-1_LMi repbase;    DNA;    INV; 2144 BP.
XX
AC   .
XX
DT   24-FEB-2014 (Rel. 19.11, Created)
DT   24-FEB-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2144
RA   Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3003-3003 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           556..1602
FT                 /product="Mariner-1_LMi_1p"
FT                 /translation="MVYSNSEKAEMILIYGECRQNAAEACRVYAERYPDRE
FT                 HPTCRTFQNIYRQLYATGMVVARKRVRNRPVTGEAGAVGVLAAVAVNPHRS
FT                 TRDIARAGGLSQSSVMRILHRHRFHPFHVSLHQQLHGDDFNHRVQFCQWAL
FT                 TENALQFYLFTDEAGFTNHGAVNLRNMHYWSVDNPRWLRQVERQRPWTVNV
FT                 WCGIIGDHLIGPHFIAGAQTAATYIAFLQNDLPTLLENVPLETRRRMWYQH
FT                 DGAPAHSAINTRLTLDRMFDGRFIGRGGRINWPARSPDLTPLDFFLWGTLK
FT                 ENVYRDVPTTPEDMKQRIVAACGDITPDVLRRVRHSLRHRLQLCAANDGHH
FT                 FEHLLA"
XX
SQ   Sequence 2144 BP; 567 A; 487 C; 516 G; 574 T; 0 other;
     cagggtgagt cacctaacat taccgctgga tatatttcgt aaaccacatc aaatactgac        60
     gaaccgattc cacagaccga acgtgaggag aggggctagt gtaattggtt aatacaaacc       120
     ataaaaaaat gcacggaagt atgtttttta acacaaacct acgtttttta aatggaaccc       180
     cgttagtttt gttagcacat ctgaacatat aaacaaatac gtaatcagtg ccgtttgttg       240
     cattgtaaaa tgttaattac atccggagat attgtaacct aaagttgacg cttgaaacct       300
     ccgacgttca gttgcgtgtt gtaacaaaca cgggccacgg tcggcgagca gcatctgcag       360
     ggacatgttt acgatgacga ccgtgtttac gagtgtggct gtagtgcact gttgtggttt       420
     ggtctagctg tcgcagtgtc cgcatgtagc gcttgctgct attgttattc tgcattcgtc       480
     tttgcacgca gactaactgt agtacactgt gttaccagac gtctgtgata gtgtagtgtt       540
     gtaggaactg tgaccatggt gtattcgaac tctgaaaagg cggagatgat actcatctat       600
     ggcgagtgtc gacaaaatgc agctgaagcc tgcagggtgt atgcagaacg gtacccggac       660
     agagagcatc caacgtgccg cacatttcaa aacatctacc gccaactgta tgcaacaggt       720
     atggtcgtag cacgcaaacg ggtccgtaac aggcccgtca caggagaagc gggtgcagtt       780
     ggtgtgttag ctgctgttgc cgtgaaccca cacaggagta cacgggacat tgcgagagcc       840
     ggtggactga gtcaaagtag tgtcatgcgc atactgcatc gtcaccgctt tcacccgttt       900
     catgtgtcgc tacatcagca attacatggt gatgacttta atcatcgagt gcaattctgt       960
     caatgggcat taacagagaa tgcgttgcag ttctacctgt ttaccgatga agcgggtttc      1020
     acaaaccacg gggcagtgaa tctacggaac atgcattact ggtccgtgga caatcctcgc      1080
     tggctccgac aggtagagcg acagcgaccg tggactgtaa atgtatggtg cggaatcatt      1140
     ggcgaccacc tcattggtcc tcacttcatt gcaggggccc aaacagctgc aacatacatc      1200
     gcgtttctac agaatgatct gccaacgttg ctcgaaaatg tcccactgga aacgcgtcga      1260
     cgtatgtggt atcagcatga tggtgcacct gcacattccg caattaacac taggctgacc      1320
     cttgacagga tgttcgacgg gcgtttcata ggacgtggag gacgcataaa ttggccagcc      1380
     cgttctcctg atcttacacc tctggacttc tttctgtggg gtacgttaaa ggagaatgtg      1440
     taccgtgatg tgcctacaac cccagaggat atgaaacaac gtattgtggc agcctgcggc      1500
     gacattacac cagatgtact gcggcgtgta cgacattcat tacgccatag attgcaattg      1560
     tgtgcagcaa atgatggcca ccactttgaa catctattgg cctgacatgt cgggacacac      1620
     tctattccac tccgtaattg aaaacggaaa ccacgtgtgt acgtgtacct cacccctcat      1680
     ggtaatgtac atgtgcgtca gtgaaaaaga ccaataaagg tgttagcatg tggacgtaat      1740
     gtgctgttct agtctcttct gtacctaagg tacatcaccg ttccctttgg atccctactt      1800
     aattcggtgc tctccgatac acacgatcga acagcggagg agtggtactc aagcgtcaac      1860
     tttaggttac aatatctccg gatgtaatta acattttaca atgcaacaaa cggcactgat      1920
     tacgtatttg tttatatgtt cagatgtgct aacaaaacta acggggttcc atttaaaaaa      1980
     acgtaggttt gtgttaaaaa acatacttcc gtgcattttt ttatggtttg tattaaccaa      2040
     ttacactagc ccctctcctc acgttcggtc tgtggaatcg gttcgtcagt atttgatgtg      2100
     gtttacgaaa tatatccagc ggtaatgtta ggtgactcac cctg                       2144
//
ID   Mariner-1_MMo repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1266
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6263-6263 (2021).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1185
FT                 /product="Mariner-1_MMo_1p"
FT                 /translation="MSSFVPNKRHLRELLLYFFNLKKTAAEAHRLLVEAYG
FT                 EAALSERSCREWFQKFKNCDFDVEDKERSGRPKSYEDTELEALLMEDSRQT
FT                 QEELARTLQVTQQAISHRLKSLGMIQKQGNWVPHELKPRDVERRFCTCEIL
FT                 LARQKRKSFLHRIVTGDEKKRKSWGPPGHASTSTAKPDIHGKKLLLSIWWD
FT                 QLGVIYYELLKPGETITGALYRTQLMRLSRALKEKRAHYYSRHDKIILLHD
FT                 NARPHVAVPVKNYLETLNWEVLPHPPYSPDIAPSDYHLFRSMAHGLSEQYF
FT                 TSYEDTKNWVDSWIATKDEEFFRRGIRMLPERWEKVVANDGQYFE"
XX
SQ   Sequence 1266 BP; 402 A; 233 C; 273 G; 358 T; 0 other;
     tattaggtgt acaaataagt ttccgccgtt taacgaaaga tgtcctcact aagaggttac        60
     gttaaaatcg tcagatgtaa catgtgatat cgtgagtttg gacatctagt aacaacatac       120
     acttagagta ttagtgactc tttatccgta ttacatattt ctttttgtgc aaaaatgtca       180
     agttttgtac cgaataagcg tcatttgcgg gaactgttac tatacttctt taatttgaag       240
     aaaactgcag ccgaggccca tcgattactc gtagaagctt atggtgaagc tgctttgagc       300
     gagagaagtt gtcgtgagtg gtttcaaaag tttaaaaact gtgattttga tgtggaagac       360
     aaagaacgta gtggaagacc gaaatcgtac gaagacacgg aattggaagc attattgatg       420
     gaagattcgc gccaaacgca agaagaactc gcacgtacat tacaagtgac tcaacaagca       480
     atttctcatc gtttgaaatc gttgggaatg attcaaaaac aaggaaattg ggttccacat       540
     gaactgaagc cgagagatgt tgaacgccga ttttgcacat gtgaaattct tcttgccagg       600
     caaaaacgaa agagtttttt acatcgtata gttactggtg atgaaaagaa gagaaaatca       660
     tggggaccac ctggccatgc ttcaacatcg acagccaaac cggatattca tggaaaaaaa       720
     ctcttgctgt ctatttggtg ggatcagctt ggtgtcattt attatgagtt gcttaaaccg       780
     ggcgaaacca tcactggagc tctctatcga acacagttaa tgagattgag ccgagcactc       840
     aaggaaaaac gcgcccatta ctactctaga catgacaaga ttattctcct acatgataat       900
     gctcgtccgc atgttgcggt gccggtcaag aattatttag aaacacttaa ttgggaagtg       960
     ctacctcacc cgccttattc accagacatt gccccgtctg attatcatct attccggtcg      1020
     atggcacatg gcttgtctga gcagtacttt acatcatatg aagatactaa aaattgggtc      1080
     gattcgtgga tagctacaaa agatgaagag ttctttcgac gtggtattcg aatgctgcca      1140
     gaaagatggg aaaaagtagt ggctaatgat ggacaatact ttgaataaaa cataatgtac      1200
     tgttctttca gaataaacct ctattttttt gtaaaaaacg gcggaaactt atttgtacac      1260
     ctaata                                                                 1266
//
ID   Mariner-1_PBa repbase;    DNA;    INV; 1297 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1297
RA   Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 613-613 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-1_PBa_1p"
FT                 /translation="MEKIEYRAVIKFLHLKGNTPAQIKIELDAVYGDSAPS
FT                 FATVKRWAAEFKRGRTSLADDERSGRPKTATTADNIENVHQMVLDDRRIKV
FT                 REIAEAMGISKERVCHILTEELDMRKLSARWVPRLLTLDQKRIRMNISKAL
FT                 LERFKRNESDFLRRFITVDETWIHHYTPETKEQSKQWTAKGEPAPKKVKTV
FT                 PSAGKVMATVFWDSHGIVCIDYLEKGKTITGAYYASLLDKLKAEIAKKRPH
FT                 LKKKKVLFHQDNAPAHTSAVAMAKIHELHFELVDHPPYSPDLAPSDFFLFP
FT                 KLKVSLGGQRFSSNEEVIAYVNAYFAEQDANYYLEGLKRLEYRWEKCIDLK
FT                 GDYVEK"
XX
SQ   Sequence 1297 BP; 396 A; 258 C; 306 G; 337 T; 0 other;
     tacgagggta gtctgaaaag ttttgagcct taacatgaag atgacgttac tcgtcaaaac        60
     cattctagta ctacaatagt atatgctttg aaagactttt gtgaaaattt cagccatttt       120
     ggacgctcag ttgttgtttg acagtcgttt gtgtcagtcg atgtcagtgt ttttgtaaaa       180
     atggaaaaaa ttgaatatcg tgccgtgatt aaattcttac atttgaaagg caatacgcct       240
     gcgcaaatta aaatcgagtt ggacgctgtt tacggggact ctgccccatc atttgccacc       300
     gtaaaaagat gggcagctga atttaaacgt ggtcgtacca gcttggctga tgatgagcgt       360
     tcgggacggc caaaaactgc gaccaccgct gataacatcg aaaatgttca ccaaatggta       420
     ctggacgacc gtcgaatcaa ggttagagag atagcagagg ctatgggcat atcgaaagaa       480
     cgcgtttgtc atatattgac tgaagaattg gatatgcgca agctatccgc gcgttgggtg       540
     ccgcgcttgc tcactttgga ccaaaaacga attcgaatga acatttccaa ggccctgttg       600
     gagcggttca agcgaaacga gtcagatttt ttgcgtcgat tcataactgt agatgaaact       660
     tggatccacc actacactcc agagacaaaa gaacagtcaa aacagtggac tgcaaagggt       720
     gaacctgctc cgaaaaaggt gaagacggtt ccatcagctg ggaaggtaat ggcgactgtt       780
     ttttgggata gtcacggaat tgtgtgtatc gactatcttg aaaaaggtaa aacaataacg       840
     ggagcgtatt acgcatcatt acttgataag ctgaaggcag aaattgcaaa aaaacggccg       900
     catttgaaga agaagaaagt gctgttccat caagacaacg cacctgctca cacttcggcg       960
     gtcgccatgg ccaaaattca cgaactgcac ttcgaattgg ttgaccaccc accgtattca      1020
     ccagatctgg cccccagcga ctttttcctg tttcctaagc ttaaagtttc gcttggagga      1080
     cagagatttt catcgaacga ggaggtcatc gcatacgtaa acgcctattt tgcggagcaa      1140
     gacgccaact actatttgga ggggttaaag aggttagagt atcgatggga aaagtgtatc      1200
     gacttaaaag gagattatgt tgaaaaataa aactatattt gaccgaaaaa atacttgttt      1260
     ctatgttagg ctcaaaactt ttcagactac cctcgta                               1297
//
ID   Mariner-1_RPr repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1296
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3246-3246 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-1_RPr_1p"
FT                 /translation="MDEKEFRVLIKHYFMKGKTPQETKEKLDKHYGDSAPS
FT                 IRTVYKWFQNFRSGHMGTSDAERSGRPVEVTTPEIIDKIHDMVMDDRRVKV
FT                 REIASAVGISNERVHNILHQHLDMTKLSARWVPRLLTLDQKRNRVKCCKDG
FT                 LQLFQKNPQDFKRRFVTVDETWIHHYTPETKEQSKQWVTKGESAPKKAKTV
FT                 PSAGKIMATVFWDSQGIILIDYLEKGKTITGAYYSSLLDRLKTELQEKRPR
FT                 LAHKKVLFHHDNAPAHTSAVVVAKLMEIGFQLVSHPPYSPDLAPSDYYLFP
FT                 NMKKWLAGKRFYSNEEVIAETNGYFSDLDKSYYSEGINKLEQRWTKCISLK
FT                 GDYVEK"
XX
SQ   Sequence 1296 BP; 403 A; 257 C; 301 G; 335 T; 0 other;
     tacgagggtc gtttgaaaag tccgtgcaaa gtcagagaga tagcaccact ggcgcgtatc        60
     gaggttatgt ttagttagta gcatctcttg gaagaacaca caccaagttt cagccagatc       120
     ggtctatttc tttgtgtttg gcattcgttt gaatcgagga agtcgagtga ttttcaaaaa       180
     atggacgaaa aagaatttcg tgtgttgatt aaacactact ttatgaaagg caaaacgcct       240
     caggagacta aagagaagct tgataaacat tatggtgact ctgcaccttc gattagaaca       300
     gtttataagt ggtttcaaaa ttttcggagt ggccatatgg gcacaagtga cgctgaacgt       360
     tctggacgcc ctgttgaggt tactactcca gaaatcattg ataaaatcca tgatatggtg       420
     atggatgaca gaagagtgaa ggtgcgtgag attgctagtg ctgtgggcat ctcgaatgaa       480
     cgggtacata atattttgca tcaacatttg gacatgacaa agctatccgc aagatgggtg       540
     ccgcgattgc tcacgcttga ccaaaaacga aatcgtgtga agtgttgcaa ggacggtttg       600
     cagctgttcc agaagaatcc gcaggacttt aagcgtcgtt tcgtcactgt ggatgaaaca       660
     tggatacatc actacactcc tgagaccaaa gaacaatcta aacaatgggt taccaagggg       720
     gaatctgcgc caaaaaaggc gaagaccgtt ccttcggccg gaaagattat ggcgactgtc       780
     ttttgggatt cgcaaggaat aatcctcatc gactatctgg aaaagggtaa aactattaca       840
     ggtgcatatt attcatcgtt attggaccgt ttgaaaaccg agctgcaaga aaaacgccca       900
     cgattggccc acaaaaaagt ccttttccat cacgacaacg caccagctca cacctcagca       960
     gttgtggtcg caaaattaat ggaaataggg ttccaactcg tttcacatcc cccctattct      1020
     ccagacttgg ctccctcgga ctactatttg ttccccaata tgaagaaatg gctggcggga      1080
     aaaagatttt attcaaacga ggaggtgatt gcagaaacga atggctattt ttcagacttg      1140
     gacaaatcct attattcgga agggatcaac aaactagagc agcgttggac gaagtgtata      1200
     agcctaaaag gagactatgt tgaaaaataa aaaaggttta ccccaaaaaa ttaagtagtt      1260
     tttatttttg cacggacttt tcaaacgacc ctcgta                                1296
//
ID   Mariner-1_SIn repbase;    DNA;    INV; 2950 BP.
XX
AC   .
XX
DT   13-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2950
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 318-318 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. ~1200bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1388..2455
FT                 /product="Mariner-1_SIn_1p"
FT                 /translation="MGDYSPNEIVDILLVLGECHRFYKRAAVLYRRRYPMR
FT                 LHHPNASAIRKIESRIRRGNIRRQRKRRMIDDYRMNARFLTVLAAVHLNPN
FT                 ISTRQIQIQIGIPRETARRYLKVVKYHPYHLSLNQALNEQDHEERLLFCQW
FT                 AVQQIQNDENFFKFVMFSDEATFHSDGSLNRHNSHYWAPVNPHWMQQIDHQ
FT                 HRWTVNVWCGIVNGYLIGPYCFDNTVNGESYLRLLRDDLPFLLENVDLHTR
FT                 MRMWFQQDGAPPHFAHVVRNYLNEMYPEKWIGRGGPIKWPSRSPDLTAPDF
FT                 YLWGFLKDYVYRERPTTRADMIERIRIACNNITRDTLLHTVTHFQRRIQLC
FT                 QQVNGATFEHLIA"
XX
SQ   Sequence 2950 BP; 883 A; 589 C; 585 G; 893 T; 0 other;
     ccgggtgacc cattttaaag tatcccctag aatatttcga aaactaagca ttttcagcaa        60
     aaatgtttca gacaaaagtt atatggtttc gagggggaca taagttggtg ttattaattt       120
     gaccttgaat agttgcttga aggccacgtg aaggtcactt tcaatttttt aaatggaacg       180
     gcctactttt tattacatat tcttgtagct tatctcgaga cgtttccaaa acactataaa       240
     caaatgtttt tttgttaagt atttttcgag ttgtgaggct tgaaagttaa tttttcaaga       300
     aatacacttt agatcaaaaa attaaaaaaa aacaggtgtt tgatattttt ttaaatgcta       360
     tgtaataatg gctatatttt ttcatcatac cgccggcttt agcgttaccc gatgtacacc       420
     gcgaggaggt agcacggtcg gattttgtac atcatgtagc ccttaaaagg gctgatgtta       480
     taattgatct ttttaagcaa taaggtgctc aaaagtggca ccgttaacct gttgacaaag       540
     ctggattcgg cgttgaaaat gagtaacagt atgcagaaga gtatcgcgtg tgatattatt       600
     gcacgctatt cgaattcttt ctatcatatc ggctctggtg gttggtcttt ctcgatagac       660
     ataatctttg aggaagcccc acaagtagaa gtcaggagca gttaaatctg gtgaccttga       720
     tggccactta attggacctc ctctgcctat ccacttttca ggatacattt cattaaggta       780
     gttcctcacg acgtgtgcaa aatgtggagg agcaccatct tgctgaaacc acattctcat       840
     tcttgtatgc agatcaacgt tttctagcaa aaatggaaga tcgtctctta gcagtcgcaa       900
     gtaactttca ccgttgacag tgttatcaaa acaataggga ccaatgaggt agccatttac       960
     aattccgcac cacacattga cggtccagcg gtgttgatga tctatttgct gcatccaatg      1020
     tgggttcacg ggggcccagt agtggctgtt gtgtcgattc aatgatccat cactgtgaaa      1080
     tgtggcttcg tcagagaaca ttacggactt caaaaagttt tcatcgtttt gaatttgctg      1140
     tactgcccac tgacaaaaca attgccgttc ttcgtgatcc tgctcattta acgcttggtt      1200
     caaggacaca tgagtgttta cgttgtatcc acactgtatc cacgttacat ccaagtagtt      1260
     acatctgaac cttaaagtca ataaagtctt ttgttttgtg tcttccttgt gtgtgaaagt      1320
     tttcattatc tgttacttcg atttctgaac aaattgttag atttacatca tctgagaatc      1380
     gggcggaatg ggtgattact ctccgaatga aatcgtggat attctccttg ttctaggaga      1440
     atgccaccgt ttttataaaa gagcagcagt attgtatcgt agacgatatc ctatgcgact      1500
     gcatcacccg aatgcttccg caattcgcaa aattgaatca agaattcgaa gaggaaatat      1560
     tcggcgacaa cgaaaacgac gtatgatcga cgattatcgt atgaatgcgc gctttcttac      1620
     agttttggcg gcagttcatt tgaaccctaa catatcaacg cgccaaattc aaattcaaat      1680
     tggtatccca agagagactg cgcgaagata cttgaaagtc gtgaagtacc acccatacca      1740
     tttgtccttg aatcaagcgt taaatgagca ggatcacgaa gaacggctat tgttttgtca      1800
     gtgggcagta cagcaaattc aaaacgatga aaactttttc aagttcgtaa tgttctctga      1860
     cgaagccaca tttcacagtg atggatcatt gaatcgacac aacagccact actgggcccc      1920
     cgtgaaccca cattggatgc agcaaataga tcatcaacac cgctggaccg tcaatgtgtg      1980
     gtgcggaatt gtaaatggct acctcattgg tccctattgt tttgataaca ctgtcaacgg      2040
     tgaaagttac ttgcgactgc taagagacga tcttccattt ttgctagaaa acgttgatct      2100
     gcatacaaga atgagaatgt ggtttcagca agatggtgct cctccacatt ttgcacacgt      2160
     cgtgaggaac taccttaatg aaatgtatcc tgaaaagtgg ataggcagag gaggtccaat      2220
     taagtggcca tcaaggtcac cagatttaac tgctcctgac ttctacttgt ggggcttcct      2280
     caaagattat gtctatcgag aaagaccaac caccagagcc gatatgatag aaagaattcg      2340
     aatagcgtgc aataatatca cacgcgatac tcttctgcat actgttactc attttcaacg      2400
     ccgaatccag ctttgtcaac aggttaacgg tgccactttt gagcacctta ttgcttaaaa      2460
     agatcaatta taacatcagc ccttttaagg gctacatgat gtacaaaatc cgaccgtgct      2520
     acctcctcgc ggtgtacatc gggtaacgct aaagccggcg gtatgatgaa aaaatatagc      2580
     cattattaca tagcatttaa aaaaatatca aacacctgtt tttttttaat tttttgatct      2640
     aaagtgtatt tcttgaaaaa ttaactttca agcctcacaa ctcgaaaaat acttaacaaa      2700
     aaaacatttg tttatagtgt tttggaaacg tctcgagata agctacaaga atatgtaata      2760
     aaaagtaggc cgttccattt aaaaaattga aagtgacctt cacgtggcct tcaagcaact      2820
     attcaaggtc aaattaataa caccaactta tgtccccctc gaaaccatat aacttttgtc      2880
     tgaaacattt ttgctgaaaa tgcttagttt tcgaaatatt ctaggggata ctttaaaatg      2940
     ggtcacccgg                                                             2950
//
ID   Mariner-1_TCa repbase;    DNA;    INV; 1781 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1781
RA   Jurka J.;
RT   "Mariner/Tc elements from insects.";
RL   Repbase Reports 9(3), 674-674 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..1379
FT                 /product="Mariner-1_TCa_1p"
FT                 /translation="MFSASEYCDMYLVYGASEGNALDAVRQYGIRYPQRRQ
FT                 PSINIFRRLDQRLRENRTPIPEYKGIHPGRPRVRRTVETEEAIIDAVAENP
FT                 SISCRQVGRLLNIPFKTVNRVTRDEMLHPYHYTKVQSLLPADYERRMAFAQ
FT                 WILDKDVDFLRKILWTDESLFTNNGIFNRHNHHYYAINNPFLNFETGRQHR
FT                 FSLNVWAGIVGNQLIGPHILPDRLGGDKFLNFLQFDLENHLLDDVPLAVRR
FT                 EMWLQMDGAGPHYAVPVRRWLNENYENRWLGRGSATPWPARSPDLNPVDFF
FT                 MGPYQRHCIYSTSAGKSSHFARKSFCSL*"
XX
SQ   Sequence 1781 BP; 562 A; 300 C; 342 G; 576 T; 1 other;
     tcgggtgtgt caaaaaggtc ggataaactt tttagcacat gttaagtact gttcatagac        60
     cccaaaaaat atttaaaaaa ttggtattat ttttttaatg gtatatggcc tttttaacag       120
     ttacaraaaa acaacttaaa ctaaaaattc ctttgttaga tcacttacgt atggtattag       180
     ttatatggtt tacattgtca taaaagcatt ttattgaaaa tttgtgttct atctaaagga       240
     atagtttggt tttaatcaag ttaaagttag tggacaaaag tgcttcaaat gtgcagtagc       300
     atatgacaac attgtaatat ttctatggaa acaactttga aggtattttt tggcaaagtg       360
     tcaaacaaat gtgtcaaact ttttgatgat tttaaatcat ttattgtgaa acaataatgt       420
     tttcggcaag tgaatactgc gacatgtact tggtttatgg tgcaagtgaa ggaaatgctt       480
     tagatgcggt gagacaatat ggcatccgat atccccagcg acgacaacca agcattaata       540
     tttttcgacg actcgatcag agacttcgag aaaatcgcac tccgattccg gaatataaag       600
     gaatacatcc tggaaggcct cgcgtaagaa gaactgttga gacagaggaa gcaattattg       660
     atgcggttgc cgaaaatcca agcatcagtt gtcgtcaagt tggtagactg ttaaacattc       720
     cgtttaaaac agttaatagg gtgacgcgag atgaaatgct acatccatat cattatacaa       780
     aagtccagtc tttattgcca gcagattacg aacggagaat ggcttttgct caatggatac       840
     ttgataaaga tgtggacttt ttaagaaaaa ttttatggac ggatgaatct ttatttacca       900
     acaacggaat ctttaatagg cacaatcacc attattacgc aataaataat ccatttttga       960
     attttgaaac gggacgtcag cacagatttt cgttgaatgt atgggctgga atagtaggaa      1020
     accaattaat aggtcctcat attttgccag atcggctagg aggtgataag tttttaaatt      1080
     ttttgcaatt tgatttagaa aatcatttat tggatgatgt gcctctggca gtcagaagag      1140
     agatgtggct acaaatggac ggtgctggtc ctcattacgc tgtaccagtt cgaagatggc      1200
     ttaacgaaaa ttacgaaaat aggtggttag gccgcggcag tgctactcct tggccggcta      1260
     ggtctccaga cttaaatcct gttgattttt ttatggggcc atatcaaaga cattgtattt      1320
     actccaccag tgccggaaaa tctagccact ttgcaagaaa gagtttttgt agcctttaac      1380
     tcagttactc cggacatgtt agaacgtacc acaaattctg ttcaaagacg tgccgaagcc      1440
     tgcttattag caaatggcag aacatttcaa catttattat aaaatacatt gtttgttttt      1500
     aattttactg tttattaaat tgctttgttc ctaaattagt tttccctaat tgttgtaaaa      1560
     atatctatct attccggttc ccaaggaaac atttgtacct gatgctaatt tcgactatcg      1620
     ctattgaggt aacatagcac aatgttgccg ctttggtcat tactttttaa agaattactg      1680
     gctacacgat gtctgcacaa aaaaaatcct tcaaatttgt gatctctgaa ctactctcca      1740
     gctatgctta aaagtttatc cgaccttttt gacacacccg a                          1781
//
ID   Mariner-20_AEc repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 563-563 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..1232
FT                 /product="Mariner-20_AEc_1p"
FT                 /translation="MTFGSVETKLWRLKCQYVVYIGTRMNFEQRANIKFCF
FT                 KLGKTFTETHNLMKQVYGDNCVARASVYEWYTRFKNGREDINDDAHTGRPK
FT                 STINENSIEVVRNFIKHEPKSSVRYMEMELNIPKSTIYRILTEHLGLQKVC
FT                 ARFVPHKLTDDQKMHRIQHSKDIIKEAKKDQNFLYSIVTGDETWCFQYDPE
FT                 TKRQSAEWKARNDPKPKKSRLEKSKVKTMLICFYDSKGIVHKEFVPAGQTV
FT                 NAVFYVSVLKRLVHRIRRIRPEYREGGSWRLLHDNAPSHRSTLVTDFLTKN
FT                 HILTINHSPYSPDMAPCDFYLFGKMHLSMKGKRYVDVEDIQRACTTILKDV
FT                 PLNDIKHSFEMLLDRAKRCIESDGDYFE"
XX
SQ   Sequence 1312 BP; 415 A; 257 C; 280 G; 360 T; 0 other;
     caaggtgcgt cccaaaattt tccgaacttt ttcaataggg ataggtcggg tggcgccatc        60
     cgtgtgttcg attgcgcgtt tgaaaggtac atccctagct gacttccagt aaaaatttca       120
     tgacatttgg ttcagtggaa acgaagttat ggcgtctcaa gtgtcagtat gttgtataca       180
     tcggtacgag aatgaacttc gaacaaagag ccaatattaa gttttgtttt aaacttggta       240
     aaacatttac cgaaacccat aatttgatga aacaagttta tggtgataat tgtgtagccc       300
     gtgccagtgt ttatgagtgg tatacgcgat tcaagaacgg tcgtgaggac ataaatgacg       360
     acgcacatac aggtcgccca aaatcgacaa ttaacgaaaa ttccatcgaa gttgtgcgta       420
     atttcatcaa gcatgagcca aaatcttcag tgagatacat ggaaatggaa ttgaacatcc       480
     ccaaatcaac gatttatcgc attttgaccg aacatttggg cctacaaaaa gtctgtgcac       540
     gatttgttcc acacaagttg actgacgacc aaaaaatgca tcgaattcaa cattcaaagg       600
     acattattaa ggaagcaaaa aaggaccaaa acttccttta tagcattgtt actggtgacg       660
     agacgtggtg ttttcaatac gatccagaaa ccaagcgtca aagcgcggaa tggaaggcgc       720
     gaaacgaccc aaaacccaaa aaatcgcgtt tagagaagtc aaaagtgaag acaatgctca       780
     tttgttttta tgattccaag ggtattgtgc acaaagaatt cgttccagca ggccaaacag       840
     ttaatgctgt attctatgta agcgttttga agcgtttggt gcaccgcatt cgtcgtattc       900
     ggccagaata tcgcgaagga ggaagttggc gcttgttaca cgataatgcg ccatctcacc       960
     gttcgacact tgtcactgat tttttgacta aaaatcacat tttaacaatc aaccattccc      1020
     cgtattcgcc tgatatggca ccttgtgact tctacctatt cggcaaaatg catttgtcca      1080
     tgaaaggaaa gcggtatgtg gacgtagaag acatccaaag ggcttgtacc actattctga      1140
     aggacgtgcc tttgaacgac ataaaacact catttgaaat gcttttagat cgtgccaaac      1200
     gttgtattga gtccgacggg gactactttg aataaacaat ttgaatttga aaaaaaaagt      1260
     aaaccgttgt tgttttattt caaaagttcg gaaaattttg ggacgcacct tg              1312
//
ID   Mariner-20_DAn repbase;    DNA;    INV; 1191 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1191
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 276-276 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..897
FT                 /product="Mariner-20_DAn_1p"
FT                 /translation="MWTFSLQICQKNGKTSQNHCKFLKIARTHMTWSNEWH
FT                 NVVFSDEKKFNLEGPDGYNYYFHDLRKEEHHLDRLHSRVGGVMVWGAISYY
FT                 GNCELQFLTPKMNAENYNCVLKTAFPVFKNLFGNLKWHFQHDNATNPHSQD
FT                 RKSMDSKGKCQCPGVAPILPRLEHNRKRLGMVS"
XX
SQ   Sequence 1191 BP; 407 A; 222 C; 222 G; 340 T; 0 other;
     cactgcgcgt caccaggcca gcgcccccct tggtgttcgc gtttaaagtg aaatattatc        60
     aaaactatta aagattgaac tgtacaaata ttttctaata taattcgatt aattctctta       120
     ataaaaacag cgcagttggt atttgcatag atttttatta aattaaaaac taaagaaaca       180
     ggtttatttg gaagaaaaaa ctgcgtcatc agattagcgc cctccaaata taaatttaaa       240
     tatctttctt aacttgctga gcacagcaac catttttgtt ttcttgttaa ataaaacatt       300
     tttctttaat ttgacataca atatgggcag aggaacaatc ttatcttctt aggaaaaatc       360
     gaaaatcgaa gcgttcaatg aatgtggact ttctctttac aaatttgcca aaaaaacgga       420
     aagacatcgc aaaaccattg caaattttta aagattgctc gaacgcatat gacatggtcc       480
     aatgagtggc ataacgtcgt attttcagac gaaaaaaaat ttaacctaga gggtcctgac       540
     ggatataatt attatttcca cgatttacgc aaggaagagc atcatctgga tcgcttacat       600
     agccgggttg gaggagtaat ggtatgggga gccatatcct attatggcaa ctgcgaactg       660
     cagtttttaa ccccaaagat gaacgcggaa aattacaatt gcgttctaaa aactgcattt       720
     cccgttttta aaaacttatt tgggaatctc aaatggcatt ttcagcacga caatgccacc       780
     aatccacaca gccaggaccg taaaagcatg gattcaaaag gaaaatgtca gtgtcctgga       840
     gtggccccca tactccccag acttgaacat aatagaaaac gtctggggat ggttagctag       900
     gaaggtgtac gagggtggca agcaatatgc tccccaccaa ggaggattta attcacagta       960
     taaaacaggc ctggtcaaca ataacgttgg actatctcaa aaacttgtat gactctctcc      1020
     ccaatcgagt ttgcgaagtc cttgtaaaca agggaggggc aacgcattat taattttcct      1080
     taaaaatgct taaacttaaa tcgttaaaaa ttgttaaaga taatattttg taagaaattc      1140
     atcgaaaaaa gttaagttaa tgtagctggc gctatcctga tgacgcagtt t               1191
//
ID   Mariner-20_DF repbase;    DNA;    INV; 1539 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-20_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1539
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 787-787 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. ~350-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1539 BP; 503 A; 282 C; 321 G; 432 T; 1 other;
     cagtactgtg caaaattata agaccacccc tgtttgaaac atttttttgc gtttatagcg        60
     tttgtctgaa gttttatccc aaagttgata tttttttcgt aaagagcacc aaaatttact       120
     twagaaaaca tgttttgcgt gtttcagaag cactcttaat ataaagttaa aaaataataa       180
     cactttttgc gatttgcatg aaatcaaaca tattttatat tctgtaaaac attaaaaaaa       240
     ttgttgactt ttgtaagcct agttattata cgtaaaaaac aatgaagaat ccgaaaaaaa       300
     atagtacggc tcgataagtt tatctgtttt caagccacag ccaaaaaacg gagaaaaatt       360
     aaggtggcgg cgtccaagcc cttgctgacc aagcaaaaca gagaggctcg ctataactgg       420
     gcattggagc accgctcatg gactgcagaa aaatgggcca cggtgctgtt ttcggatgaa       480
     tccagctttc agctcttcag caaccgcccc tgtcgtgtgt acagaaaggc taatgaaaaa       540
     tttagcccgc agtgcatcgt tccacgagtt cagaaaggag gaggctcggt catggtctgg       600
     ggctgtatgt ctgcaaaagg tccaggagaa cttgcgtttg tggacggaac tatgaacacg       660
     gaaaaatatc tccaacatat ggatgattat atgtttccgt cgaagaagaa actctttgga       720
     cgccggaaag agtggaaata tcaacaagac aacgcaccat gtcatgtatc gaaaaaggct       780
     attgcgtggt ttctgaatcg ccgcgttcca ctattaaaat ggcctgcgcg atcaccagat       840
     atgagcccca ttgaagaatt atgggacctt ctggatagaa gaatccgcaa acacattatt       900
     cgcagtttgg atgagcttaa acgaagactc acagaagagt ggatgggatt gagagcagat       960
     cgcaagcttt ttgaaaatct cgtgaactcg atgccggaac gagtcgaggc cctcatcaag      1020
     gcgaaaggag gagccacaag atactgagat ggtgagtttc attacaaacg atgctactgg      1080
     agtacattca aacggcattt taacactcca ctgcattaca ggtacacgtt caagaccccg      1140
     atgggatccg acgtgttcag acgaagatcg gcgatgagga aaaaatgtca gttttttagc      1200
     tgtcgcttga aaacagatga atttatcgag ccgtactatt ttttttcgga ttccttgtgg      1260
     ttttttacgt ataataacta ggcttacaaa agtcaacaat ttttttaatg ttttacagaa      1320
     tataaaatat gtttgatttc atgcaaatcg caaaaagtgt tattattttt taactttata      1380
     ttaagagtgc ttctgaaaca cgcaaaacat gttttctaaa gtaaattttg gtgctcttta      1440
     caaaaaaaat atcaactttg ggataaaact tcagacaaac gctataaacg caaaaaaatg      1500
     tttcaaacag gggtggtctt ataattttgc acagtactg                             1539
//
ID   Mariner-20_DK repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-20_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1664
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1213-1213 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~800-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1664 BP; 520 A; 310 C; 311 G; 521 T; 2 other;
     cactcaaccg catatctctg cgtacacccc ataaaaattt caaattcaaa cttcaaacac        60
     acaccgttcg gccatttttc aacattttaa ccaacttttt tttcgtaaca taactttatt       120
     taattgcctt caattacgta tttttttaga attttttaac catgtcttat gatttatttt       180
     taattttaaa cttaacgcta tgaaaaagtg tacacgcaaa agtctgcgta cagctaacta       240
     aaaactactt aaagcctatt atttacaact ttttatattt agtaaggtat ccatttgcct       300
     ttagcacctc cgtaaggcgc ctcggcatgg aatccatcag tttttttgac tcctcggctg       360
     taattttgcc ccattcctcc acgatgacat ccttgagcat tttttagatg ttatgtgtgt       420
     ttccggatcc ttttctatat tagatcccat aaatgttcaa ttgggttgag gtcaggactc       480
     ctgtggaggt gttcgcasct aatttttagc attatataga agccaaagct tcgtattatg       540
     cgccgtgtgc ttgggatcgt tgtcttgctg gaaccaatat tcatgtttta gccccaaatt       600
     ttcagcactt ttttgaaaat tttttcttca aaatgttgat ataggcttct tggtccataa       660
     ttgactcgat aaaagtcaaa ttttccacgc cgctcgctgc catacacccc tacaccataa       720
     tgccgctcac tccatgcttt accgggccca ctacattttt ctttttaaag gcttctccgg       780
     tttttcgcca cactaaaaca ttccgacttt tggtcatatt ttccgatgaa agcaagtttt       840
     gcattttcgg aataaagggc aaagttttag tgtggcgaaa aaccggagaa gcctttaaaa       900
     agaaaaattt agtgggcacg gtaaagcatg gagtgagcgg cattatggtg taggggtgta       960
     tgacagcgag cggcgtggga aatttgactt ttatcgagac aattatggac caaggagcct      1020
     atatcaacat tttgaagaaa aaattttcaa aaaagtgctg aaaatttggg gctaaaacat      1080
     gaatattggt tccagcaaga caacgatccc aagcacacgg cgcataatac gaagctttgg      1140
     cttctatata atgctaaaaa ttagctgcga acacctccac aggagtcctg acctcaaccc      1200
     aattgaacat ttatgggatc taatatagaa aaggatccgg aaacacacca taacatctaa      1260
     aaaatgctca aggatgtcat cgtggaggaa tggggcaaaa ttacagccga ggagtcaaaa      1320
     aaactgatgg attccatgcc gaggcgcctt acggaggtgc taaaggcaaa tggatacctt      1380
     actaaatata aaaagttgta aataataggc tttaagtagt ttttagttag ctgtacgcag      1440
     acttttgcgt gtacactttt tcatagcgtt aagtttaaaa ttaaaaataa atcataagac      1500
     atkgttaaaa aattctaaaa aaaatacgta attgaaggca attaaataaa gttatgttac      1560
     gaaaaaaaag ttggttaaaa tgttgaaaaa tggccgaacg gtgtgtgttt gaagtttgaa      1620
     tttgaaattt ttatggggtg tacgcagaga tatgcggttg agtg                       1664
//
ID   Mariner-20_DRh repbase;    DNA;    INV; 865 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-865
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1414-1414 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. TA TSDs. ~90-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 865 BP; 298 A; 154 C; 168 G; 244 T; 1 other;
     cactgacgag caaaactgta acacgagttc aatactctaa cttcaaaggc ctgtatcttg        60
     tgttctaatt tatgcacaag cttcttgttt cgtaccatac actaagtcta gaaaatgagt       120
     agagtaatga gcggcaaacc gtcaagcacg gtggcggctc aattatggtc tgggggtgca       180
     tccataaaaa tggagttggt cccttggtat taatcgatgg aataatgcga aaggaacaat       240
     atttgagcat tttacaagaa aatcttccag aagtcatccg gaatacgggt ctttctgctg       300
     aaaaatgaca ttttttagca agacaataac ccaaagcata cgtccctttt ggtaaaaaat       360
     tggatttaaa aacaaaaatt tcagtccatg aagtggccac cacaatctcc ggatatgaat       420
     ccaattaaaa aatttatgga gtcatgtgaa atcgcaattg gcgaaatatg cagttcctcc       480
     aagtggaatg aaggagctgt gggagaggac aaaggacgta tggtatgcta ttccccccga       540
     attggtgcaa tgctacaccc aaagtatgcc aaatcgcgta ggagaaccta aaaagttaaa       600
     agggctgtgg acacattatt aaaaaatttt aataaaaata tttgkttaca aaatgaccgc       660
     agtgcaaaac tgtaacattt gacttatttt acagtttgct ccagcatttt ttactcctat       720
     tattaaatgg cttaaaattt tctaaaacgt agtgtatgaa catacctaca aaacaaaact       780
     agatttttag cgtgcataaa ttagaacaaa gatacacctt tgaagttaga gtattgaact       840
     cgtgttacag ttttgctcgt cagtg                                             865
//
ID   Mariner-20_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 19.04, Created)
DT   14-JAN-2012 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 861-861 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1208
FT                 /product="Mariner-20_HSal_1p"
FT                 /translation="MDTSKEKIRYILQFFFDKGENASQAAENVNSVYGPDT
FT                 VTANHAQFWFRRFRSGNFDVKDAPRTGRPIVENIDKIMDIVESDRHVSTVS
FT                 IAQELKIAQKTVWNHLNKAGYKKKLDVWVPHELTKKNLMDRISICESLLNR
FT                 NKIDPFLKRLVTGDEKWITYDNVKRKRSWSNRGEPAETVAKPGLTARKVLL
FT                 CVWWDWQGIIYYELLPYGKTLNSELYCQQLDRLKEAIAQKRPALANRRGIV
FT                 FHQDNARPHTSIVTRQKLRELGWEVLMHPPYSPDLAPSDYHLFLSMANNFA
FT                 GEKFASREACENRLSQFFANRDEGFYERGIMKLPSKWQQVIEQNGAYLT"
XX
SQ   Sequence 1288 BP; 381 A; 264 C; 304 G; 339 T; 0 other;
     tcaggtgtag taaaaagaaa ttcattattt ttccaataga tggctttagt tatctgtatc        60
     tcgcgttgta taagtccgat cgggttccac tagatggcgt tagaaagatg agatttcgta       120
     ctaaaaaaac ttttctgaca gttttgtgat tagttgactc agttttgttt gagcgcgcgt       180
     caaagatgga cactagcaaa gagaaaatac gctatatttt acagtttttc ttcgataaag       240
     gcgaaaacgc aagccaggcg gctgaaaatg tgaatagtgt ttatggtcct gatactgtaa       300
     cagccaatca cgcgcaattt tggtttcgtc gattccgttc cggtaatttc gatgtcaaag       360
     atgcaccacg cactggaagg ccaattgtcg aaaatatcga taaaatcatg gacattgtcg       420
     agtccgaccg tcatgtaagc actgtttcga ttgcccaaga gctaaagatt gcacaaaaaa       480
     ccgtttggaa ccatttgaat aaggctggat acaaaaagaa gctcgatgta tgggtgccac       540
     acgagttaac gaaaaaaaac ctcatggacc gaatttccat ctgcgaatcg ctgctgaatc       600
     gcaacaaaat cgacccattt ctgaagcggt tggtcactgg tgatgaaaag tggatcactt       660
     acgacaacgt caagcgaaaa cggtcgtggt cgaatcgcgg tgagccggcg gaaacggtgg       720
     ccaagccagg attgacggcc aggaaggttt tgctgtgtgt ttggtgggat tggcagggaa       780
     ttatctacta tgagctgctc ccctacggca aaactcttaa ctcggaactg tactgtcaac       840
     aattggaccg tctgaaggaa gcaatcgccc agaagcggcc agctttggcc aataggagag       900
     gaattgtgtt ccatcaggac aacgccaggc cacacacatc gatagtgact cgccagaagc       960
     tccgggagct tggttgggag gttcttatgc atccacctta tagtccggac ctggcaccaa      1020
     gtgattacca tctgttcctg tccatggcga acaattttgc tggtgaaaaa ttcgcttcaa      1080
     gagaggcttg tgaaaatcga ctgtctcaat tttttgccaa tagggacgag ggcttctatg      1140
     agagaggcat aatgaaatta ccttcaaaat ggcaacaagt tatcgaacaa aacggcgcat      1200
     atttgaccta aatcggatca ttctaactat ggtaattaaa gccttcaatt tcatgcaaaa      1260
     ataatggatt tctttttact acacctga                                         1288
//
ID   Mariner-20_LMi repbase;    DNA;    INV; 2590 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2590
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3261-3261 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..1632
FT                 /product="Mariner-20_LMi_1p"
FT                 /translation="MCNEVAREAARMYAEKYPEREGRHPCADTLRAVVKRA
FT                 RDTGDLRPAKRQRSRPVRNRNNAITLDMVHANPHSSTRTLARELQISRCTV
FT                 HRILKDAKMHPYRRHVHQRLSVDDKANRLMFCEWALNQPPEFFKQTLFTDE
FT                 STFCSTGVPNRTAHHFWASVNPHWLREADHQHRWTVNCWGGIIGKRVVGPH
FT                 FFEGRLNGAMYTNFLQNELPVLLDDIDLRTRQMMWMQQDGAPSHCTASARQ
FT                 AARDLFPNKTIGRNMDVQWPARSPDLSVLDFYFWGTIKDMVYAEECENSDE
FT                 MKNRVRQAFSVLDGSYDVLRATASIRSRLERCREQDGGLFEHLQ"
XX
SQ   Sequence 2590 BP; 694 A; 578 C; 623 G; 695 T; 0 other;
     cagggtgtct cacctaagag tcgtcaggcg cattttctct ggtgtttgag cagatatttg        60
     caatttcttt tttgcaatgt gtagctggac tcaggccaaa caaattctgc tcctcacgcc       120
     attcctgcga cgcccggtgt agatgtaaag cgtcggtttg tttcccgtca cgaacaaaaa       180
     gatttttaaa gcgaaatttt ttgctcagtc gatagagcag tcccaaatta gtctagtgtg       240
     atattcggtt tatcgaaatg tattaacaga gacagtaaaa cacgacaatt aaccagtact       300
     ccggaagcgg ctgtgtagcg cttccataag gcagtagcag acggcgcgag gcgtggcggc       360
     acacgcgacg gggcagtgcg aacacatgtt taccgatacg acaagtgctg tacgacagtg       420
     tagctggcag cggacgcatc tcagttttct ttcggccacg ccgcactgca caatacaaca       480
     tgtacacacc ttcagaagta acagacatga ttttggtaat gggtaagtgc tgctagcgtt       540
     aacttgtaca agcaccctgt ttaattgttg ttactgtaat atacagtatc tttctgacga       600
     gattccgtac tacgaattgt agggatgtgt aatgaagtcg ccagggaggc agctcggatg       660
     tacgctgaaa agtatccgga acgagaagga agacatccct gtgcagacac gttgcgggct       720
     gtagtaaaac gagctcgaga cactggggat ttgcgcccgg cgaaacgcca gcgaagcagg       780
     cctgtgcgaa atcgtaacaa tgccattacg ttggatatgg tacatgcaaa tccacacagc       840
     agtacaagga cgctcgctag ggagttacaa atctcacgct gtacggtgca tcgcattttg       900
     aaagacgcaa aaatgcaccc ataccgccgg cacgtgcacc aaaggctttc agtggatgac       960
     aaggccaaca ggctaatgtt ttgtgaatgg gcattaaacc aaccacctga gttttttaaa      1020
     cagactctat tcaccgacga gtcaacgttt tgcagcacag gcgtgccaaa tcgaactgcc      1080
     catcactttt gggcctccgt gaatccccat tggttgcgtg aggcagatca tcaacaccga      1140
     tggaccgtca attgctgggg tggtatcatc ggtaagcgtg ttgttgggcc tcatttcttt      1200
     gaaggcaggc tgaacggggc aatgtacacc aatttccttc agaacgaact gcctgttctg      1260
     ctcgacgata ttgatttaag aacgaggcaa atgatgtgga tgcaacagga tggtgcaccc      1320
     agccactgca ctgcttctgc gcgccaagct gcacgggatc tttttcccaa taagacaata      1380
     ggcagaaata tggatgtaca gtggccagct aggtcgcccg atctgtcggt cctcgacttc      1440
     tatttctggg gtacaataaa agatatggtg tacgcagaag aatgtgaaaa cagtgacgag      1500
     atgaaaaatc gcgtcaggca ggccttctct gtacttgatg ggtcatatga tgtactgcgc      1560
     gctacagcta gcattcgttc tagactggaa cgatgtagag aacaagacgg tggtttgttc      1620
     gaacacctgc agtaaggtac ggccccaatg aaatggtgat aaagttttga ttcctctttc      1680
     tctgtttccc tttgttgtgc tctaagcatt tgaaggctac tttactttga accggtttta      1740
     tgattttatt tattgtatgt ggactgttaa tggattacgt gtccacaatg aagaatcaat      1800
     aggctctatg ttaattatgg aatgcaaatc agttacagga aattgctttg atagcgacta      1860
     agtaatgtat taactgttca gttgcttagg aattgcttcg taaatgtaca gtatagtcct      1920
     gtcactaata agtgcagtaa ctaagctaaa ttgaaacaaa tttgtctact ttgttctgtg      1980
     ttttattaat ctcagacctt cgtaaaattc gatagatatt atggtgttag gtatacagaa      2040
     gctgaaacgc gtggccgttg cgtgaaatcg tcttgaaaat gatactgcat tgtgttgcat      2100
     tactgctgtg gctactagca ttgctctcag ccggtgtcca acgcatttga tacccacgac      2160
     agacaccgac gtattggtac acatgtgctc gccacttcgt cctcgcccga cgtgccccat      2220
     ctcacgtgtg ccgcctcgcc gcgcagcgtc tgctactgcc ttatggaagc gctacacagc      2280
     cgcttccgga gaattggtta attgtcgtgt tttactgtct ctgttaatac atttcgataa      2340
     accgaatatc acactagact aatttgggac tgctctatcg actgagcaca aaaaatttcg      2400
     ctttaaaaat ctttttgttc gtgacgggaa acaaaccgac gctttacatc tacaccgggc      2460
     gtcgcaggaa tggcgtgatg agcagaattt gtttggcctg agtccagcta cacattgcaa      2520
     aaacgaaatt gcaaatatct gctcaaacac cagagaaaat gcgcctgacg actcgtaggt      2580
     gagacacctg                                                             2590
//
ID   Mariner-20_RPr repbase;    DNA;    INV; 1509 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1509
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3267-3267 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(295..867,871..1359)
FT                 /product="Mariner-20_RPr_1p"
FT                 /translation="MVLSREDLARADALANEGRSVRYIAQVIGEPRSTIHD
FT                 GLQRLRTTGSLDRREGSGRQRCTSPRDDRFITLTVLRNRHVTAPEIRSELQ
FT                 TVRNVRVSSRTVIRRLQKNNLVSRRLASGPLLLERHRVERRLFVNQYLHWT
FT                 LEQWGAVLFTDECRFALWQSDDRDRVWRRPGERYASCTMRESQPFQRQPIM
FT                 VGGINTQARTELITIQNGSLTARRYIEEILQEAVVPFAPFIGDNFVLMQDN
FT                 ARPHVARIVTHYLEDVSITTMNWPARSPDMNPIENLWDMLKRHLRQLPSPP
FT                 TNVISYKLLLVSYGMLFHKMKFSRLFTRCLGDWKPSEGPEEVIRGIRNQQG
FT                 NNCYLNFNLSL"
XX
SQ   Sequence 1509 BP; 445 A; 292 C; 313 G; 458 T; 1 other;
     cactcagtga caaaaaaaaa ccggacacct gtagttattt gtttatcttc tttaataatt        60
     aggtacaaat gttagcaatg atctttgagc tcaaactaat cattgcagac tagttgttta       120
     ccatttatca gtgatactta ttcttttaaa gtgtttaaaa cgggttaaca gattttttat       180
     ttttttcttg agtcagctta tcaagtgagt tttttaattt tttcaaatta tattctttga       240
     ttaaacataa atttttgcaa aaatttaatt aaattgactt tttcccctaa aaggatggtt       300
     ttaagtcgtg aagaccttgc ccgggcagat gctttggcca acgaagggcg tagcgtacgg       360
     tacatcgctc aagtcatagg tgagccgcgc tctaccatcc acgatggcct tcaacgactt       420
     aggaccaccg gaagtctcga tcgaagagaa ggtagcggtc gacagcgatg tacgtcgcct       480
     agagacgatc gttttattac tcttacagta ctgcgaaatc gtcatgtgac cgctcccgag       540
     atacgtagcg aactacaaac ggtccgtaat gtcagggtga gctctcggac agtcattaga       600
     aggcttcaaa agaataactt agtctctaga cgtctcgcat caggtcctct tctactggag       660
     aggcatcgag tagaaaggag actttttgta aatcagtatc tccattggac acttgagcaa       720
     tggggggctg ttctcttcac agatgagtgc cggtttgctt tgtggcaatc agatgaccgg       780
     gaccgtgtat ggagaagacc tggtgagcgc tatgcttcat gtaccatgcg agaatcccaa       840
     ccttttcaaa ggcagccaat tatggtatga ggtggaatca acacccaagc ccgtaccgaa       900
     ctaattacta tacagaatgg atctttgact gctcgacggt acattgaaga gattcttcag       960
     gaagctgtgg tcccatttgc tccatttatt ggggataact tcgtgttaat gcaggataat      1020
     gctcgaccgc atgttgctcg aattgttacc cattacttgg aggatgtttc aattactaca      1080
     atgaattggc cagcacgttc tccagacatg aatcccattg aaaacttatg ggacatgtta      1140
     aagagacacc tcaggcaact tccgtcaccc ccaacaaatg ttatcagcta caaactgctg      1200
     ttggtgagtt atgggatgct gtttcacaag atgaaattca gtcgcttatt tactcgatgc      1260
     ctaggagact ggaagccmtc cgaagggcca gaggaggtaa tacgcggtat tagaaatcaa      1320
     caaggtaata attgttactt aaatttcaat ttatcactat aaagattttc cggtgtttac      1380
     ataatttttc tgtaacttat gaatttctga tctgattgca ttaaaattaa cttattcagt      1440
     aaattattac atgcgttata attaatacat agataaaaaa ttggaattaa acgaataaat      1500
     acaaatgtg                                                              1509
//
ID   Mariner-20_SIn repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-20_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 336-336 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 32bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-20_SIn_1p"
FT                 /translation="MSKFVPTKRHLREALLFCFHSKKSVAESQRMLSEAYG
FT                 DYAPSISTCEYWFRRYKKGDFNTEDKERPGQPKKFEDEELEAFLDQDPSQT
FT                 QEELAESLNVDQSTISRRLKAIGMIQKQGYWVPYELKPRDIERRKMTCELL
FT                 LQRHRRKSFLHRIVSGDEKWIHYDNPKRKKIWCRPGEPSTSTAKPNIHGAK
FT                 LMLCIWWDQLGVLYYELLQPNETITGERYQQQLMQLSRALKQKRPDYAKRH
FT                 DKVIFQHDNARPHVAKPVKETLEALNWDVLPHPPYSPDIAPSDYHLFRSMA
FT                 HGLTEQRFHYYEDIKKWVDSWIASKDVSFFRRGIHLLPERWEKVVARDGKY
FT                 FE"
XX
SQ   Sequence 1292 BP; 412 A; 253 C; 289 G; 338 T; 0 other;
     tattaggtgt atgcattaat tttaaaggat ttacaagaga tggcgtaact agtactatat        60
     cgcatcgggc caaattgttg ctaacttcat gtcaaagcac catcaagtgg ctttagtttt       120
     ctgtatgcgc cactgtgccg aattgtaaac aacattgttt ttttgagcat taaatatgtc       180
     gaaatttgtg ccaacaaaac ggcatttgcg ggaagctttg cttttttgct tccattcgaa       240
     gaaaagtgtt gctgaaagtc aacgaatgct gtcggaagct tatggtgatt atgctccatc       300
     gatttcaaca tgcgagtact ggtttcgacg ctataaaaaa ggtgatttta acacggaaga       360
     caaggaacgt ccaggccagc cgaaaaagtt tgaggatgag gaattggaag ctttcctcga       420
     tcaagacccg agtcaaacgc aagaagaact tgcagaatca ttaaatgttg atcaatcaac       480
     gatttccaga cgtttgaagg ctattggaat gattcaaaag caaggatatt gggtgccgta       540
     cgaattgaag ccaagggaca tcgaaaggcg caaaatgacc tgtgaattgt tgcttcaaag       600
     acacagaaga aaaagttttt tgcatcgtat cgtgtcgggt gatgaaaaat ggatacatta       660
     cgataatccg aagcgcaaaa aaatatggtg caggccaggc gaaccatcaa catcgacggc       720
     aaagccgaat attcatggcg ccaagctcat gctctgtatt tggtgggatc agctgggtgt       780
     actgtattat gagctgctcc aacccaacga aactatcact ggagaacgct accaacaaca       840
     attgatgcaa ttgagccgag cattaaagca aaaaaggcca gattacgcga aaagacacga       900
     caaagtgatt ttccagcacg acaatgctcg gcctcatgtt gcgaaaccgg tcaaggaaac       960
     attggaagcg cttaactggg atgttctacc acacccgccg tactctccag atattgctcc      1020
     ttcggattac cacctatttc gatcgatggc tcatggcctg acagagcagc gcttccatta      1080
     ttatgaagat atcaaaaaat gggtcgattc gtggatagct tctaaagatg tatcattctt      1140
     tcgacgtgga atccatctat taccagaaag atgggaaaaa gtagtggcta gggatgggaa      1200
     atattttgaa tgatcaattt ggtaaccatt tcgtcacagc aaagccgtaa gtttacctta      1260
     aaatccttta aaattaatgc atacacctaa ta                                    1292
//
ID   Mariner-21N1_AEc repbase;    DNA;    INV; 917 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-21_AEc; Mariner-21N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-917
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 564-564 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 917 BP; 305 A; 162 C; 206 G; 244 T; 0 other;
     cgaggtgtgg ctattaaata acgagactga cgctgctaca gaagaagtac gcatgcgcca        60
     aacgccagcg accgacagct gtttagcgtg aagccttctc tttcgaatgc agtacctctc       120
     gcttctgtaa acaaatccgt atagccgtag ccttctttcg cattagagtt gtttttttgt       180
     ttcgccggaa aaatgataag tgtaacaata gagcaacgaa ttgttgtgaa atttcacgtg       240
     aaacttggaa aaaccgctac tgaaacttat aatttattga aagaagtgta tggccatgaa       300
     tgtttatcgc gtgcacgtgt ttttgagtgg tttaagcgtt tccaagacgg ccgagaagac       360
     gttgaagatg attcacgccc gggtcgccct tccacgtcaa aaacggatga caatatcgaa       420
     acaatcggta atctggttcg atccgaccgt cggttaagta ttcgtgcgat tggtgaaact       480
     gtaggaattg acaaagaatg tgtacggcaa attttacata acaattttaa catgaaaaaa       540
     gtgtgtgcca aaatggtacc taaaattctc acgtttgaac aacaagaagc tcgcaaaaat       600
     ctttgtactg acactttgaa tgccattgaa aatgacccaa acttattgga aaggataata       660
     acattaaatt aaaataacat aaaattaaaa ggaacaagat ttgagtccgt tgaagctgtg       720
     aaagagaaag cggcacgcgt cctgaaggag ctgacagaag aagactttca gcactgtttc       780
     aaacaatgga agattcgcat ggagcgttgt agggatagag gaggggtgta tattgaaggt       840
     gataataagt aaatatgtat gaaatcaaaa taaaatgttt tacagcgtca gtctcgttat       900
     ttaatagcca cacctcg                                                      917
//
ID   Mariner-21_AEc repbase;    DNA;    INV; 1322 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-21_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1322
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 565-565 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           193..1254
FT                 /product="Mariner-21_AEc_1p"
FT                 /translation="MISVTIEQRIVVKFHVKLGKTATETYNLLKEVYGHEC
FT                 LSRARVFEWFKRFQDGREDVEDDSRPGRPSTSKTDDNIETIGNLVRSDRRL
FT                 SIRAIGETVGIDKECVRQILHNNFNMKKVCAKMVPKILTFEQQEARKNLCT
FT                 DTLNAIENDPNLLERIITCDESWFFTYDPETKRQSMHWKSPTSPRAKKARM
FT                 SKSKFKAMMIVFFDIHGIVYLHWVPEGQTINQHYYLHVLAELRERIRKKRP
FT                 ELWKDKSWVLHQDNAPAHSALSVKRFLAKYSIPVLDHPPYSPDLAPCDFYL
FT                 FPKVKSALKGTRFESVEAVKEKAARVLKELTEEDFQHCFKQWKIRMERCRD
FT                 RGGVYIEGDNK"
XX
SQ   Sequence 1322 BP; 414 A; 263 C; 293 G; 352 T; 0 other;
     cgaggtgtgg ctattaaata acgagactga cgctgctaca gaagaagtac gcatgcgcca        60
     aacgccagcg accgacagct gtttagcgtg aagccttctc tttcgaatgc agtacctctc       120
     gcttctgtaa acaaatccgt atagccgtag ccttctttcg cattagagtt gtttttttgt       180
     ttcgccggaa aaatgataag tgtaacaata gagcaacgaa ttgttgtgaa atttcacgtg       240
     aaacttggaa aaaccgctac tgaaacttat aatttattga aagaagtgta tggccatgaa       300
     tgtttatcgc gtgcacgtgt ttttgagtgg tttaagcgtt tccaagacgg ccgagaagac       360
     gttgaagatg attcacgccc gggtcgccct tccacgtcaa aaacggatga caatatcgaa       420
     acaatcggta atctggttcg atccgaccgt cggttaagta ttcgtgcgat tggtgaaact       480
     gtaggaattg acaaagaatg tgtacggcaa attttacata acaattttaa catgaaaaaa       540
     gtgtgtgcca aaatggtacc taaaattctc acgtttgaac aacaagaagc tcgcaaaaat       600
     ctttgtactg acactttgaa tgccattgaa aatgacccaa acttattgga aaggataata       660
     acatgtgacg aatcgtggtt ttttacttat gatcccgaaa cgaagcgcca atccatgcac       720
     tggaagagcc caacttcacc gagagccaaa aaagctcgaa tgagcaaatc aaaattcaaa       780
     gcaatgatga ttgttttttt cgatattcat gggattgtgt accttcactg ggttcctgaa       840
     ggtcaaacta ttaatcaaca ttactacctt cacgttcttg ctgaactccg tgaaagaata       900
     aggaaaaaac gacccgaatt gtggaaagac aagtcatggg ttctccacca agacaatgcg       960
     ccggctcatt ccgcattgtc tgtcaagagg tttctagcca agtacagcat cccagtgtta      1020
     gaccatccgc cttattcgcc ggatcttgca ccgtgcgact tctatctgtt tcctaaggtg      1080
     aaatctgcat taaaaggaac aagatttgag tccgttgaag ctgtgaaaga gaaagcggca      1140
     cgcgtcctga aggagctgac agaagaagac tttcagcact gtttcaaaca atggaagatt      1200
     cgcatggagc gttgtaggga tagaggaggg gtgtatattg aaggtgataa taagtaaata      1260
     tgtatgaaat caaaataaaa tgttttacag cgtcagtctc gttatttaat agccacacct      1320
     cg                                                                     1322
//
ID   Mariner-21_DF repbase;    DNA;    INV; 941 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-21_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-941
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 788-788 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. 178-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 941 BP; 283 A; 196 C; 198 G; 260 T; 4 other;
     cagggtccgg cactcgaagt gtaaccaata aaaaaggtta taaattaagt ttggaaagtt        60
     agttttattt atttcccagc tcaatatgtg taaaaataat cttaaattta agaaaaattc       120
     atttttgctc gatatgacca ccttttgcct tgactatagc cttgagacgg tcgaagaacg       180
     ttgcttcgct tgsccgcaag tgggcaattt ccgaacattg tgttttctga tgagaaaatt       240
     tttacaattg agcaattcgt aaacacccaa aacgataggg tttacttgac tgaccgttcg       300
     tacgagaatt tgagccatcg attggcaacc aggagccacc acccgccaca ggtaatgatt       360
     tgggccgctg taaccccaga tgggcgctct ccaatcgttt ttatcgagcc tggcgtcaag       420
     gtaaatgcaa aattttatca ggaaagtgtt ctgaaggttg ccttgaagcc gtgggcagac       480
     aaacatttcg gtggcagacc atggacattt caacaggact cagcaccgtc tcakaaagcc       540
     agagtgaacc aagaatggct ggaaaacaat gttccgaact tcataacgtc cacacaatgg       600
     ccctmgaatt caccagmtgc gaatccgctg gattattctc tttgggctat tttggagagc       660
     aaggtctgaa ctaaaaatac accagtctga ggcgttgaaa aaagccattg tccgcgagtg       720
     ggccaaaata ccggcaagtc acgttcggcc agcttgcgat tctttcttcg accgtctcaa       780
     ggctatagtc aaggcaaaag gtggtcatat cgagcaaaaa tgaatttttc ttaaatttaa       840
     gattattttt acacatattg agctgggaat taaataaaac aaaatttcca aacttaattt       900
     ataaccattt ttattggtta cacttcgagt gccggaccct g                           941
//
ID   Mariner-21_DK repbase;    DNA;    INV; 1619 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-21_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1619
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1214-1214 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~210-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1619 BP; 547 A; 262 C; 318 G; 485 T; 7 other;
     cagtggggag caaaaatgat tccacgatca acgttttcat gtttgagcgc acataaaaat        60
     taaacgaata aagtaaatga caaaaacttt tttttattga acaccttgtt tattgtttac       120
     aattaggcat acgtagcaaa attgtagatg aagaaattaa attgttataa ttaaaaaacm       180
     aaawcaagcg gcatgtactc agttttgcac catccggtat tcgttcatat ttttkctctt       240
     cttacttatt ttatcagcaa ttgacctgca gatttattgt taaatgcctt ttgcatttat       300
     tattatttgt cagaattcag aaaatcactc tcttccccaa gtttatagtt gtttgttgca       360
     tttgtaacct agtcggtaac gatttcctga aaaattaaga agctgtctta tgataaaaaa       420
     aatattattg tttccctgac taaaagtggg tgttcgacac gcactattga tgagaagctg       480
     aaaattaata aatatgttgc agaaaagaca caatgtttgt ccttaaagga agttggatgg       540
     tcaccgtcgc mttctaacag atgctgacgc tcgacttatg atgtctaaaa taagaaaaaa       600
     tagactttta acgccaaaat aagcttatac tgaaataagt aaaggcgtaa gacgatggat       660
     agctagaaga gcgctaggta ggattggtta cgagccagca atgaaaaaaa ctaaccagct       720
     ttatccgaga aaaaggttaa ggctcgggta aaattcgcta aggaacacaa gaactggaca       780
     acagaagact ggaaacgtat tatctggtcg gaagaatcta agtttaatcg ttttcagtcg       840
     gatggaaaac agtattgttg gcggagacct ggtgacaagt ttcaaaggca tcatgtgaag       900
     caaacagtga aacatggagg cggcaacata atggcatggg gctgtttcac gttggacagt       960
     tgctcaaaaa tgaagggatt atgagaaagg atgattattt gaacattttg cawacccatc      1020
     ttcctaattt tcttgaccag tgtkcgaacc cagagccgga aatcastttt cagctaggtg      1080
     gggatcccaa gcacacagcg gaaatagtta aaaaatggct cggaaaccaa aattttagga      1140
     tgatggaggg gccagcgcaa agtcccgacc tcaatccgat tgaaaaccca ttgtcaatca      1200
     taaaacgacg gctcgggcag tatcaatcaa gcccatccaa cttggacgtt ctttgggggc      1260
     gtgtagaatt agagtggaat aatattccga aaggaattgt cgaaaaacta gttgagagta      1320
     ttccaaaatg tataaaaaat gtcatagaaa ttaagggtct ctggacaaaa tatttataat      1380
     gaatttattt tgaatttttt cttcaatggt gcaaaactga gtacatgccg cttgtttttg      1440
     ttttttaatt ataacaattt aatttcttca tctacaattt tgctacgtat gcctaattgt      1500
     aaacaataaa caaggtgttc aataaaaaaa aagtttttgt catttacttt attcgtttaa      1560
     tttttatgtg cgctcaaaca tgaaaacgtt gatcgtggaa tcatttttgc tccccactg       1619
//
ID   Mariner-21_LMi repbase;    DNA;    INV; 1324 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1324
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3262-3262 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(84..437,236..1189)
FT                 /product="Mariner-21_LMi_1p"
FT                 /translation="MLCFFNRWQQWQGSNFNMADVRLSFEARKQIIKWYWK
FT                 FENVAAVRRQWRSEYGTEPPSRLTIHVYETNSKFMEQCVMCIKVDQGDLVQ
FT                 LQVMIPQLRSWNCFSVRLKNLRGKRHVRVMVWYRTTFKVNNTRLRDKFEIH
FT                 GTVCDVHKGRSGRPRTATSDDSTTAVLELFQRSPQKSSRQAARESNVSASS
FT                 VLRILKKGRFRVYIPRLVQQLSDDDPDRRLEFCEWVQEMVRREPGFMGSII
FT                 WSDEAQFKLNGTVNRHNCVYWAEDNPHVTVEKAVNLPGVNVWCGLSARGLI
FT                 GPFRFEGTVTGETYLTMLADSIFPAIRALYGNDEFYFQQDGAPPHYHRDVR
FT                 AYLDHNVPGQWIGRRGPIEFPARSPDLTPLDFFLWGTVKDEVYKRKPRNLD
FT                 TLWNEIQAVCAEISLDTLVRCTESVVTRTQKCIDAEGHQFEH"
XX
SQ   Sequence 1324 BP; 376 A; 255 C; 335 G; 358 T; 0 other;
     caggtgcgtc aaaaaatgta tacacacttt gaactggaaa atttatttcc cgttctacaa        60
     ggttaaatat ctgtgagaaa gtaatgttat gtttcttcaa caggtggcag cagtggcaag       120
     gaagtaactt caacatggcg gacgtgcgtt tgagctttga agcgcggaag cagataatta       180
     agtggtactg gaagtttgag aacgtagctg cggttcgaag acagtggaga agtgagtatg       240
     gtacagaacc accttcaagg ttaacaatac acgtctacga gacaaattcg aaattcatgg       300
     aacagtgtgt gatgtgcata aaggtcgatc agggcgacct cgtacagcta caagtgatga       360
     ttccacaact gcggtcttgg aactgtttca gcgttcgcct caaaaatctt cgaggcaagc       420
     ggcacgtgag agtaatgtaa gtgctagtag tgtgctacgc attctgaaga aaggcaggtt       480
     tcgtgtgtac attccaaggc tggtgcaaca gctaagtgac gacgatccag atcgaaggtt       540
     ggaattttgt gaatgggttc aggagatggt gagacgtgaa ccgggattta tgggtagcat       600
     aatttggtcg gatgaagccc aattcaaact caatggaact gtcaataggc acaattgcgt       660
     gtactgggct gaagataatc ctcacgttac agttgaaaag gctgtgaatt tgcctggtgt       720
     aaatgtgtgg tgtggtttgt ctgcaagggg actcattggg cctttccgct ttgaaggtac       780
     tgttactgga gaaacgtacc taacaatgct tgctgactcc atattccctg ccattcgtgc       840
     attatacggt aatgatgagt tttatttcca acaagatggc gccccgccgc actatcatag       900
     ggacgtacga gcatacctgg atcacaatgt gccaggccag tggataggac gcaggggacc       960
     aatcgagttt cctgcacgct ctccagacct cacgccgctg gatttcttct tatggggcac      1020
     agtaaaagat gaggtgtaca aacgtaaacc acgtaacctg gacacacttt ggaatgagat      1080
     tcaagcggtg tgcgcagaaa tctcattgga cactttggta cgatgtacgg aatcagtggt      1140
     gactcgtact cagaaatgta ttgatgctga aggccaccag tttgaacatt aatcacattt      1200
     tcaaagtaca tttatttttc aaattggact ttaagctttc catttccaga aatttaacat      1260
     tgtagaacgg gaaataaatt ttctatgacg cttcaaagtg tgtatacatt ttttacgcac      1320
     cctg                                                                   1324
//
ID   Mariner-21_RPr repbase;    DNA;    INV; 1581 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-21_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1581
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3268-3268 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(313..963,923..1330)
FT                 /product="Mariner-21_RPr_1p"
FT                 /translation="MVLSNVDVARADALAREGRSVRSIAETLGVAKSAIND
FT                 ALRRFRETGSYERRAGSGRPRATTEVDDRFITLSVLRDRHLTAPEVRDRLQ
FT                 VARNTRVSSDTVRRRLRERGLEARRPATGPQLLERHRRERRLFADQHFHWT
FT                 VEQWGTVLFTDESRFGLYHSDDRDRVWRRSGERFAQCTLRESRPFERRSVM
FT                 VWGGINFHARTELIFIDNGGSDCSEVHFSLIMGALTARRYIEEVLLEAVIP
FT                 LAPFIGDQFILMQDNARPHTARIVTEYLEQVGITVLDWPARTPDMNPIEHL
FT                 WDNLGRRVRHRHPPPSDLNQLQIALREEWDALPVEYVQNLISSMPDRIRAL
FT                 RRRRGRNTRY"
XX
SQ   Sequence 1581 BP; 440 A; 309 C; 376 G; 456 T; 0 other;
     cactcaacag caaaaaaaac cggacactta atatttttta tattaaaagc tgattatcag        60
     taatgtgttt gtttttgtgg gtaatctggt tattacagag aaggaagggt ctaagtccat       120
     tgaactaatc ccttcaggat tagtagggca tgagataaga ctcagatgtg gcttatttgt       180
     cttgaggctg ctttacctga cggaactctt ctaaactgta agcaggtttt cgcaccttta       240
     aagatcttta atttattaac cgcgcctttc tgtcattaat agacgtgatt ttttttattt       300
     tggtccagaa taatggttct ttcgaatgta gacgtagccc gagctgatgc cttggcaaga       360
     gaaggccgga gcgtccgatc tatcgcagaa acccttggag tagcgaagtc cgccattaat       420
     gatgcactcc ggcgtttccg ggagactggc agttatgaac ggagggctgg cagtggccga       480
     ccaagggcca caactgaagt tgacgatcga tttatcacgc tctcagtatt gagagaccgc       540
     catttaactg ctcctgaggt tcgggacagg cttcaagtgg cgcgaaatac gcgtgttagc       600
     tcggacacag tacggcggag actgagggag cgtggacttg aagcaaggcg ccccgcgaca       660
     gggccccaac tcctggaaag gcatcgtaga gaaaggcgat tatttgccga ccagcatttt       720
     cattggactg tagagcaatg gggaacagtt ttattcacag atgagtctcg ctttggtcta       780
     taccactcag acgatcgaga cagagtgtgg agacgatcag gggagcgatt tgctcaatgt       840
     actcttcgcg agtcacgacc tttcgaaagg agatcagtta tggtttgggg tggaatcaat       900
     ttccacgccc gtactgaact gattttcatt gataatgggg gctctgactg ctcggaggta       960
     cattgaggaa gtgctcctag aggctgtgat cccgttggct ccatttattg gtgaccaatt      1020
     cattttgatg caggataatg ctcgcccaca taccgccaga attgttaccg aatacttgga      1080
     gcaagtggga atcacagttc tggactggcc tgcacgaact cccgatatga atcccataga      1140
     acatttatgg gataatttag gaaggcgtgt tagacatcgt catcctcctc ctagtgactt      1200
     aaatcagctc caaattgctc ttcgtgaaga atgggatgct ctgccggtgg agtacgtcca      1260
     aaatttaatt tcttctatgc ctgacaggat tagggccctt cgccgtagaa gagggagaaa      1320
     tacccgctat tagaagaaca tcccttgtca gaaaacctga taaaaatgaa gaataaagtt      1380
     taaaaaaaaa tgtgttaatt tcttattttt tctttatttt ataattttgt gttaataatt      1440
     aataaaaatt agtcatttgt ggcagatttt gtgtaaataa cttataaata aaccaattct      1500
     taccataaat taaaaagatt agcgtattta acaaaattat gagaccaaat ctgagtgtcc      1560
     ggtttttttt gctgttgagt g                                                1581
//
ID   Mariner-21_SIn repbase;    DNA;    INV; 3063 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   11-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-21_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3063
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 337-337 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. ~480bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           930..2009
FT                 /product="Mariner-21_SIn_1p"
FT                 /translation="MMLRLSERERISLLMIRGWGDRLRSYNDVRQLFNETF
FT                 CNEDTAISISTVHRTIRRFNEIGSVKNRPVLGRPKSATNPEKSLDVLQSFI
FT                 ENPHDSSRKVALQHNIDKWSVLKILKNNKFHPYKAHLVQELNEDDFDRRIE
FT                 FCELMMERIDEDPNFLSNIVFSDEATFQINGNVNRHNCRFWSDVNPHWIEE
FT                 THTQYPQKLNVWAGILNNALIGPFFIDGNLTAAKYEDMLRHEIIPAIQVIV
FT                 EDNFEDTWFQQDGAAPHYGRNVRHYLSTMFPERWIGRRGAIEWPPRSPDLS
FT                 PLDYFLWGYLKEKVYKTKPQNLDELRNRILQEAALIPHDYIQNAVSSFYHR
FT                 IACCQTVNGAHFEQLIV"
XX
SQ   Sequence 3063 BP; 929 A; 649 C; 606 G; 879 T; 0 other;
     cagggtgggg gaaaagtacc ggaacagcaa aatatctcga aaactaagca ttttagaaaa        60
     aagtgtttca gataaaagtt gtagggtttc aaaagatcta tttactaata ttatcagttt       120
     gaccttggat ggcgtcgcca aggtcagatc aaaatcacat taactttttt aaatggaaca       180
     ccctattttt gattccagaa tctaatagct ggtgtcaaga cctttccaaa accctacaag       240
     aaagtttatt tttgttgagt actttccgaa ttgtgaggct tgaaagctac agtgtactgt       300
     aactttcaag cgtcataact cggaaagtac ttaatgaaaa ataacttctg attgaaattt       360
     atagggttac aatggtatca cacaatctac acataacatc aaaaacgccc attttgccat       420
     ccctgggggg gggggggggg gggggcgaaa aaatcttaaa tgcaatgtgg ggtcgtgtga       480
     aatcaatttc acaatgtggg ggcattgaaa taaatttcaa ccgtattcgt gatccaaact       540
     tcaagcaaga acctggaaac gaagaactga gagcacgtgc gctatcgata aacggcagtg       600
     ctaaggtttt gggaataatt catgctttga tttatcggtt gaccgattaa gcgagcacgg       660
     atcatcagag ggtggatgcc gctccttgaa ttacgcgaac cgcgacaact actctcgata       720
     cgcattgcaa gtacgagaca gtttgatttc aatcttagat cgtacccaag ttctattcca       780
     tttttgcttc tcgagttaat ttattgaaca tttgttacag tttactgtat cacgtgattt       840
     ttttcttcgc tgtcttttca ataactttta acacttgagt attcaagtat tagtttattt       900
     agtttgaccc atttttaccc cttcagtcaa tgatgttacg tctttctgaa cgagaacgca       960
     tatctctttt gatgattaga gggtggggcg atcgattgag atcatacaat gatgtgagac      1020
     agcttttcaa tgaaactttt tgcaatgaag atactgccat ttcaatatct acagttcata      1080
     gaacgattag gcgtttcaac gaaattggaa gtgttaaaaa tcgtccagta ttaggtaggc      1140
     caaagtcagc aacaaatcca gaaaaatcat tagacgttct acaatccttc atcgaaaatc      1200
     cgcatgattc aagccgtaaa gtagctctgc agcataatat tgataaatgg tctgttctta      1260
     aaatattaaa aaataataaa tttcatccct ataaagccca tcttgtgcaa gagctaaatg      1320
     aagatgattt tgataggcgc attgaatttt gtgagttaat gatggaaaga atagacgagg      1380
     atcctaactt tctatcaaac atagttttct cagatgaagc aacatttcag ataaatggca      1440
     acgtcaatcg gcacaattgt agattctggt ctgacgtaaa tcctcactgg attgaagaaa      1500
     cacacacaca gtatccgcaa aaattaaatg tgtgggcagg cattctcaat aatgccctta      1560
     ttggtccatt tttcatcgat ggaaatttaa cagctgcgaa gtacgaggat atgctaagac      1620
     atgaaataat tccagcaata caggtaatcg tggaggacaa ttttgaggat acatggtttc      1680
     aacaagatgg tgctgcgccg cattacggaa ggaatgtccg tcattatctt agcacaatgt      1740
     ttcctgagcg atggataggt aggagaggag ctatcgaatg gcctcctaga tcgcctgacc      1800
     tatcacctct cgactacttt ctgtggggtt acctcaaaga aaaagtttac aaaacgaaac      1860
     cacaaaatct ggatgaatta cgaaaccgga ttcttcagga agctgctctt atccctcatg      1920
     attatattca aaatgccgtt tcatcttttt atcatcggat agcctgttgt caaacagtta      1980
     acggtgcaca ttttgaacaa ttgattgtat aaaccttccg acacttgcct tagttggtta      2040
     cacgcacccc cggtcttgca cgcacgcacg cacacacagt agagggggtt cggagtcgtt      2100
     aactactgtg gaattgacga accacggggt ccctgtctct cctgcgaaac acatttgcac      2160
     acacgtacac acgcacgcac cgcacgcacg cgcgcgcaca cacacgccgc acacacacac      2220
     acacacacac agcagagggg gtttggagtc gttaactact gtggaattga cgaaccacgg      2280
     gtccctgact ctcctgtgaa atacatttgc acacacgtac cacacacaca cagcagaggg      2340
     ggtttggagt cgttaactac tgcacaagca cgcacatcgc acatgccttc ctacatgcac      2400
     ttttatccac acgtgtccgc aaaggaaagt ccggagagtc tttctcacgt cctcgtcgtg      2460
     gaccctacgc tactgcaaaa tctcaatgtt taaatgatca taactctaca aaaaaaaatt      2520
     gtagagacct cggcgacatc gcgttgttct cgtctcgaaa aaccctttca aacaaaccct      2580
     cacacgaccc cacattgcat ttaagatttt ttcgcccccc ccccttttcc tcgcccccca      2640
     gggatggcaa aatgggtgtt tttggtgtta tgtgtagatt gtgtgatacc attgtaaccc      2700
     tataaatttc aatcagaagt tatttttcat taagtacttt ccgagttatg acgcttgaaa      2760
     gttacagtac actgtagctt tcaagcctca caattcggaa agtactcaac aaaaataaac      2820
     tttcttgtag ggttttggaa aggtcttgac accagctatt agattctgga atcaaaaata      2880
     gggtgttcca tttaaaaaag ttaatgtgat tttgatctga ccttggcgac gccatccaag      2940
     gtcaaactga taatattagt aaatagatct tttgaaaccc tacaactttt atctgaaaca      3000
     cttttttcta aaatgcttag ttttcgagat attttgctgt tccggtactt ttcccccacc      3060
     ctg                                                                    3063
//
ID   Mariner-22_AEc repbase;    DNA;    INV; 1318 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-22_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1318
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 566-566 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..1244
FT                 /product="Mariner-22_AEc_1p"
FT                 /translation="MERSLEQRYAIKFCVRLGKNATETFQMLQEAFKDDCI
FT                 SRSQSGRWHKAFKEGREEVADEPRSGRPTTARTDENVNRVCEVLRSDRRLS
FT                 IQYIADTLNMSTFAVHGIVTENLQMRKVCAKLVPKVLTEDQKELRVSRCQE
FT                 LLDLIQNEPDFLNSVVTGDESWMFEYDPESKRQSSEWHSKSSPRPKKARMS
FT                 KSRIKTMLIVFFDVRGIVHFEFVPQGETVNSAFYLEVLKRLKRRVARVRAD
FT                 IKDAIKLHHDNAPSHTAFIVANYLARSNTPVVPQPPYSPDLAPCDFFLFPR
FT                 LKRELKGKHWESVENIQKHVTTFLRDIPVEEFQRAFQAWQTRLRKCIDSGG
FT                 EYFEEF"
XX
SQ   Sequence 1318 BP; 335 A; 329 C; 356 G; 298 T; 0 other;
     cagggtccat tatgaaagta atgcgcatga ttttattgtg acgcgaatat ccatcgcagc        60
     ggggtaaaat gggtcgggaa atgtggtggg ggggtctgcc cttccaaggc agccggtcgc       120
     cagtttgctc cgagcagtct gagtggaaag acgtgcctcc gcgtgaagtg tgtttttcga       180
     ctttgtaaca cggcgcgatg gagcgttcgc ttgaacagcg atacgccatc aagttttgcg       240
     tgcgacttgg aaagaatgca accgaaacat tccagatgct tcaagaggcc ttcaaggacg       300
     actgcatttc aaggtcacag tccgggaggt ggcacaaggc gttcaaggag ggccgggagg       360
     aggtcgccga cgaaccccgt tctggacgcc caacaacggc cagaaccgac gaaaacgtga       420
     atcgtgtgtg cgaagttttg cgttccgacc gtcgattgag catccagtac atcgctgaca       480
     ccctaaacat gtccacattt gcggtacatg ggatagtgac ggagaatctg caaatgcgca       540
     aggtctgcgc gaagcttgtg ccgaaagtgt tgacggaaga ccagaaagaa cttcgagttt       600
     cgcgctgtca agaattgttg gatttgattc aaaatgagcc ggactttctt aactctgtcg       660
     taaccggaga cgaatcttgg atgttcgagt acgacccaga atcgaaaagg cagagcagcg       720
     agtggcactc aaaatcatcc ccccgcccca agaaagcgcg aatgagcaag tctcgcatca       780
     aaacgatgct cattgtcttt tttgacgtcc gaggaatcgt ccattttgag tttgtaccgc       840
     agggagaaac tgtcaactca gccttctacc tggaggtgct caagagattg aaacgccggg       900
     tcgcgcgcgt gagggctgac atcaaagacg cgatcaagct ccaccatgac aatgccccca       960
     gccacacggc cttcatcgtt gccaactacc tggcccggag caacaccccg gtggtccccc      1020
     agccccctta cagtcccgac ttggctccgt gcgacttttt tttgtttccc cgtctgaaga      1080
     gagagctgaa aggaaagcat tgggagtccg tggaaaacat ccaaaagcat gttacaacgt      1140
     tcctaagaga cattcccgtc gaggagtttc agcgtgcctt ccaggcgtgg cagacacgtc      1200
     tccgcaagtg tattgattca gggggagagt attttgaaga attttgagca tttgtaccgc      1260
     tacgatcaat aaatctattt ttcccagaaa atgcgcatta cttttataat ggaccctg        1318
//
ID   Mariner-22_DF repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-22_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1650
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 789-789 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. 224-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1650 BP; 574 A; 301 C; 323 G; 450 T; 2 other;
     cagtggctca cagcttattt gacccacctt gtatattcaa atttaagtga gaataacttt        60
     ttaactaaag cagatattaa aaaaatwaaa acgcaggttt ttcggcgggt attgtaggaa       120
     caacaaagaa cttaaatttt attaaaataa caaaaggttt tataattatt caactaaaaa       180
     taaaaatact gcagttttct atgtcacagc ttatttgacc cattgcattt aatgctcagc       240
     ttctctacca agaagtgtaa attaacggtt ctttttttgg ttactctttg ctcaatgtat       300
     tcgcaaatag aattttcact tttaattcga tttcgtcaag aaagcacgcc tattaaccat       360
     gggaaaacgc acaaccatcg aacagaggga attggtcctt agacaccata aaaacggtgt       420
     ttcccggcga gaaatcgcta aaattgtgaa cataccagat ggtactgtca aagccatcat       480
     ccacagattc gtgtttgaaa accgcgtgga agacaagggc agaaaagcgc caaataagat       540
     tttcaccgaa acggatgaac gccaaattat aaggaaaatc aaaaaagatc caaggatttc       600
     ggcgccaaaa ttggcccatg agatgcagga cataaccggc aaaaaattta gcccagaaac       660
     agtccgacgt gttttaaggg aacatgactt taatggccga gttgctcgca agaagccgtt       720
     cataaataaa aaaaatagag acagccgctt taagttcgca aaggagcaca taaaaaagga       780
     cataggattt tggaacgacg ttaatttttg cagatgagtc caaattcaac atttttggct       840
     ccgatgggca aacctatgtg tggaggaagc ccaatacaga gctcgaagac aaacacctga       900
     aggcgacggt aaagcatggc ggtggccatg taatggtgtg ggcctgtatg tcggctgcag       960
     gtgttgggag gctwcagttc attgaatcaa caatggacaa aatggtttac ctcaatattc      1020
     tgaaggataa tttgatccaa agcgccgagg atttgggtat aaaggaatca tttcggtttt      1080
     accaagacaa cgatccgaag catacctcgg ggatcgttca aacttggcta atatacaatt      1140
     gcccccacgt gatgaaacca ccggcacaat caccagactt aaacgtcata gaaaacctgt      1200
     ggtcaatatt agatacgaat atccgcaaaa ggcagatatc gaacaaaaac gatctcaaag      1260
     ttgcgttgat ggaggagtgg gccaaaatac ccccagaaac caccaaaaag ctagtggagt      1320
     ctatgcaaaa acgccttaaa atggtcttag accagaaggg gggccataca aaatattaaa      1380
     atatgtataa tctttcgtta tttttctaat ttttataatt ttaagaaatg ggtcaaataa      1440
     gctgtgacat agaaaactgc agtattttta tttttagttg aataattata aaaccttttg      1500
     ttattttaat aaaatttaag ttctttgttg ttcctacaat acccgccgaa aaacctgcgt      1560
     tttaattttt ttaatatctg ctttagttaa aaagttattc tcacttaaat ttgaatatac      1620
     aaggtgggtc aaataagctg tgagccactg                                       1650
//
ID   Mariner-22_DK repbase;    DNA;    INV; 1666 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-22_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1666
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1215-1215 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~230-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1666 BP; 618 A; 266 C; 291 G; 486 T; 5 other;
     cactgccgct cacttgaata gcccacccaa gacattcaca ttaaaacccc aataactcgc        60
     aaaataaaat attaaaaaaa acagtttatt tatttattaa acttgtttat atatgtaata       120
     aaataataca aattaatact ggttgttcaa caagaataac aaaaaakaaa aataattcca       180
     aaaagtaacc aaattttaac tgaaaatttg gctcatttga atagcacaat tgtttgtatt       240
     atcatttcac gatcgatata aagtggggaa gtcaaacaaa aatgattatt tgaataaagt       300
     ttaataatat aaaatcaaaa atatttgaaa ctacgaaaaa tgggaagtgc aaaaccgttg       360
     aacgacgaag aaaaaggaaa aatccaagct tttatggagg ttggcctttc tttacaagaa       420
     atagcaaaaa aaaaaacaaa ccgaagtcgt aaagttataa gcaactattt gaagaatacc       480
     cagaattatg ggaaaaacat aaaaggacga acctccagtg caattaagcc agcggacagg       540
     agagctattt tgaggcatgc acccaattcc catgactctg ctgcaaagat tagggaaaaa       600
     tccggtgtga aggctagctt gggcacagtt aacacgtcat ttctaaagca gaatatttaa       660
     agcgtcgtaa ataaaaaaaa aaacaccgct aaacacatct cgaaaggccc aacggcttgt       720
     cttttgccga gctaacatgt ctctcaatcg agagtggtat ctagtccttt tttcggacga       780
     aaaaaagttt aactttgagg ggcccgatgg atatatcttt tatttctatg atttctgtaa       840
     agaggaacac tttcttaaaa aaaagcacag tcgagaaggt ggtgtaatgg tatggggagc       900
     gatttcctac tacggcacac tccaactgca attcttaaca tcaagaatga atgcaacagc       960
     atataaagaa gttctagaga aagcccttcc tgaggcaaaa aattgtttgg aaacctggaa      1020
     tggaagtttc agcaagacaa tgccccaata cacacggcaa ggatcgtaaa atcatggctt      1080
     gataaggtaa acgtgtcaat attacaatat tggccacctt attcgcccga attaaatatg      1140
     atcgaaaatg tttgggaatg gttagcaaga aaggtctatg agtccagaaa gcagtatgat      1200
     aataagaatg atctcattaa tgccatccaa gcggcgtggt caacaatttc cctggactac      1260
     cttaagagtt tgtgcgactc tttacccagc aggatatttg aagtcatcca taatcgtggt      1320
     ggatccactc attactaatt ttaggaaaat atgtcaagaa agcttcttat tctttaatta      1380
     cattataatt ataattaatt cttccgaaaa aatagtcaga atataaagtt tttataaaat      1440
     gtgctattca agtgagccaa attttcagtt aaaactttgt cactttttgg aattattktt      1500
     atttwtgtta wtcttgttga acaaccagta ttaatttkta ttatttttat tacatatata      1560
     aacatagttc aataaataaa taagactgtt ttttgaaatt ttattttgta gttattgggg      1620
     ttttaaaatg aatgttttgg gtgggctatt caagtgagcg gcagtg                     1666
//
ID   Mariner-22_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   29-MAR-2012 (Rel. 19.04, Created)
DT   29-MAR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-22_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 862-862 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-22_HSal_1p"
FT                 /translation="MDNQNEHFRHIMLFYFKKGKNAAQTCKKICAIYGEDA
FT                 VKERVCQKWFARFRCGDFSVKDKPRLGRPNEIDSDKLKAVIDTNLHYTTRE
FT                 IADVLQISKSSVENHLHQLGYVSRLDVWVPHELSEAHLIQRISISDSLGKR
FT                 EKSDPFLKRMVTGDEKWIVYNNIKRKRSWGQRSEPPQTTSKAGLHPSKIML
FT                 SIWWDWKGVVFYELLPKNRTINSDVYCSQLDKLNAAIHEKRPELVNRRGVV
FT                 FHHDNARPHTSLQTRQKLLALGWDVLPHPPYSPDIAPSDYHLFRSLQNSLN
FT                 GKHFVCEEAVKRHLEQFFAQKDRKFFERGIMKLPERWQKIVDNNGQYIID"
XX
SQ   Sequence 1288 BP; 394 A; 274 C; 290 G; 330 T; 0 other;
     ttgggttggc caataagtcc gtgcggtttt tctcgataga tggcttcaag gcgctctgct        60
     aagctttatc ttcagtcgaa agtcttgaaa gcgtatagtc attgacagat gacatttcaa       120
     cgtgcattta aaaaatatac gtaaatattg cttgtgtatc ttgtgtgttt tgcgtcatct       180
     gaaaatggat aaccagaacg agcattttcg gcatattatg cttttttatt ttaaaaaagg       240
     caaaaacgcg gcgcaaacct gtaaaaagat ttgtgcaata tatggtgagg atgccgtaaa       300
     agaacgcgtg tgccaaaagt ggtttgcgag atttcgttgc ggagattttt ccgtcaaaga       360
     caaaccacgc ttaggccgac caaatgagat cgacagcgac aaattgaagg cggtaatcga       420
     caccaatcta cactacacga cgcgggagat tgcagacgtt ctccaaatat cgaaatcgag       480
     cgtggaaaat catctgcatc aacttggtta tgttagccgt ctcgatgttt gggttccgca       540
     cgaactgagc gaagctcatt taatccaacg catttccatc agcgattcac tcggaaaacg       600
     tgagaaaagc gatccatttc tgaagcgtat ggtaactggc gacgaaaaat ggatcgtcta       660
     caataacatc aagcgcaaaa gatcgtgggg gcagcgcagc gaaccgccac aaaccacttc       720
     gaaggcaggg cttcacccga gcaagatcat gctctcaatt tggtgggatt ggaagggtgt       780
     tgtgttctac gagctacttc cgaagaacag aacgatcaat tcagatgtgt actgtagtca       840
     gctggataaa ttgaatgcag cgatccacga gaagcgtcca gaattggtga atcgtagagg       900
     cgtcgtcttt caccatgaca acgctaggcc gcacacatct ctacaaaccc ggcaaaaatt       960
     attggcgcta ggctgggatg tcttaccaca tcctccgtat tctccagaca ttgcaccttc      1020
     agattaccat ctgtttcgct cccttcaaaa ttccttgaat ggaaagcact tcgtttgtga      1080
     ggaagctgtc aaacgacact tggaacagtt ttttgcccag aaagacagga agttctttga      1140
     acgaggaatt atgaagctgc ccgaaagatg gcaaaagata gtagataaca acggccaata      1200
     cataattgat taaagttatt accttctata aaaataatca tcgatcattt ataagtaaaa      1260
     aaccgcacgg acttattggc caacccaa                                         1288
//
ID   Mariner-22_LMi repbase;    DNA;    INV; 1422 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1422
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3263-3263 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..1264
FT                 /product="Mariner-22_LMi_1p"
FT                 /translation="MIKRTAQRTHQEPRCWPSNGASCAAVGHRRSQCQPVC
FT                 RGIRSSISVFNTGSMPRQHVREPYVQLTDFERGRIVGMREAGWTYRRIAQH
FT                 VGREVSTVHRCCRQWSAEGARARRPGSGQQRRTDARQDRRILRSAVGDRTA
FT                 TSQQIRDTVAPGVSARTIRNRLHEAGLRSRAPLGRLPLTPQHRAARLQWCR
FT                 DRRVWRDEWRRVVFSDESRFCLGANDGRMRVWRRAGERHNQDCIRPRHTGP
FT                 TPGIMVWGAISYTGRTPLVIVEGTLNSARYIQTVIEPIVLPFLGRQGNMLF
FT                 QQDNARPHVSRATQRALEGVSQLPWPARSPDLSPIEHVWDWMKRRLTRSAR
FT                 PARTLVQLRRQVEMAWHAVPQDYIQHLYDRLHGRIAACIAAKGGYTRY"
XX
SQ   Sequence 1422 BP; 310 A; 400 C; 410 G; 302 T; 0 other;
     cactcctgga aattgaaata agaacacatt gacgccggtg tgtaagaccc accatacttg        60
     ctccggacac tacgagaggg ctgtacaagc aatgatcaaa cgcacggcac agcggacaca       120
     ccaggaaccg cggtgttggc cgtcgaatgg cgctagctgc gcagcggttg ggcaccgccg       180
     cagtcagtgt cagccagttt gccgtggcat acggagctcc atctcagtct ttaacactgg       240
     tagcatgccg cgacagcatg tacgtgaacc gtatgtgcag ttgacggact ttgagcgagg       300
     gcgtatagtg ggcatgcggg aggccgggtg gacgtaccgc cgaattgctc aacacgtggg       360
     gcgcgaggtc tccacagtac atcgatgttg tcgccagtgg tcagcggaag gtgcacgtgc       420
     ccgtcgacct gggtccggac agcagcgacg cacggatgca cgccaagacc gtcgcatcct       480
     acgcagtgcc gtaggggacc gcaccgccac ttcccagcaa attagggaca ctgttgctcc       540
     tggggtatca gcgaggacca ttcgcaaccg tctccatgaa gctgggctac ggtcccgcgc       600
     accgttaggt cgtcttccgc tcacgcccca acatcgtgca gcccgcctcc agtggtgtcg       660
     cgacaggcgt gtatggaggg acgaatggag acgtgtcgtc ttcagtgatg agagtcgctt       720
     ctgcctcggt gccaatgatg gtcgtatgcg tgtttggcgc cgtgcaggtg agcgccacaa       780
     tcaggactgc atacgaccga ggcacacagg gccaacaccc ggcatcatgg tgtggggagc       840
     gatctcctac actggccgta cacctctggt gatcgtcgag gggacactga acagtgcacg       900
     gtacattcaa accgtcatcg aacccatcgt tctaccattc ttaggccggc aagggaacat       960
     gctgttccaa caggacaatg cacgtccaca tgtatcccgt gccacccaac gtgctctaga      1020
     aggtgtaagt caactaccct ggccagcaag atctccggat ctgtccccca ttgagcatgt      1080
     ttgggactgg atgaaacgtc gtctcacgcg gtctgcacgt ccagcacgaa cgctggtcca      1140
     gctgaggcgc caggtggaaa tggcatggca tgccgttcca caggactaca tccagcacct      1200
     ctacgatcgt ctccatggga gaattgcagc ctgcattgct gcgaaaggag gatatacacg      1260
     gtactagtgc cgacattgtg catgctctgt tgcctgtgtc tatgtgccta tggttctgtc      1320
     tgtgtaatca tgtgttgtat ctgaccccag gaatgtgtca ataaagtttc ccatttctgg      1380
     gacaatgaat tcacggtgtt cttatttcaa tttccaggag tg                         1422
//
ID   Mariner-22_RPr repbase;    DNA;    INV; 2901 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-22_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2901
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3269-3269 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. A few copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           494..2521
FT                 /product="Mariner-22_RPr_1p"
FT                 /translation="MGRFWEKKTERIRKSEAQIKAALEEIERGRSIREVAS
FT                 LLGFSKSSLQRYWDKRKQFATIAGFQSQRNFVPKQVFTTEQETMLENYLVK
FT                 SSEMFYGLTNEQTRKVAYQYAVAVKSGNIPETWHTDEIAGREWLVGFMSRH
FT                 KKLTLRKPESTSLGRAACFNQANLDAFYNNLREVYQQHSFLPQDIWNVDET
FT                 GVTTLHSQPKVIASKGSKQVGQIASAEKGKLVTVCFFINALGNTVPPAFVF
FT                 PLKTFREEKFFGCPPGSKGLAHPSGWITNENFLKVLKHFIDHVKCSKEKPV
FT                 LLLLDNHETHVNIDVINEAKNNGVVLLSFPPYCSHRLQPLDVSVFGPFKQS
FT                 YNRACQDFMIRPENAGRPINIYHIPQLATIAYNRAFTRQNAASGFEKTGIW
FT                 PFNSQVFTDVDLRPATVTDRPAEEVASSAAQTINNQEPGSSSCNVINLADQ
FT                 TSSQTSPIPSTPNNPSSSAKSVKSTLPEDVCPYPKAGPRQKSNRGRQPGKT
FT                 RILTSTPVKKQIEMAAEEKRKKEQAQEERRKRKREKTNESGIVEKRRPIKR
FT                 RLDELEQITDDEDVFSLHDSDSEWAEEEEDLDNVAIKEGCHVVAKIHGDKA
FT                 GSARNYVCEVVKVKKSXFDVKFLKKHGFTSRFXVTREVAYVXEEDIIGCLP
FT                 KAQVDSRARFKDMLYFETDLASYSIFA"
XX
SQ   Sequence 2901 BP; 976 A; 504 C; 606 G; 807 T; 8 other;
     taggggatga tgtggaggga tgggacacag aagggatggg acatttagta aaattcaaaa        60
     tctactgtgt aaattcccac tatttttagt tcagatgttg gcaacactgt tatttcattg       120
     tacagttcat tgtggtgtgt gagcagctat aacattttgg acaagaaaac attctttata       180
     acgtaagtac atgtgattta ttttgcaatt tctttgtaag attgttattt ttaaagtatt       240
     aaatgcagag taaaaattac tacatagttt aaaaggtcag agtttcatga aatatagagg       300
     aataagtgtg aagccaaaat gatcacagat tgtttgtttt gggttatttt attctggtag       360
     tgcattgcag gaggaatggg acagagcatt gcagaaggga tgggacgcta ttttagtgat       420
     aaatgttgtg tcccattcct cctgcacaca taggttaaga aactaattag tgtgttttat       480
     cattttcagt acaatgggtc gcttttggga aaagaaaact gaaaggatta ggaaaagcga       540
     agcacagatt aaagctgcat tagaagaaat tgagcgtggc agatctatta gagaggtggc       600
     atctttactg ggattctcca agtcttctct gcaaagatac tgggataaga ggaaacagtt       660
     tgctaccata gctggctttc agtcacagag aaattttgtg ccaaaacaag ttttcacgac       720
     tgaacaagag actatgctag aaaattattt agtaaaatct tctgagatgt tctatggtct       780
     gacaaatgaa caaactcgca aagttgctta tcaatatgca gtcgctgtga aaagtggcaa       840
     tattcctgag acctggcaca cagatgaaat tgcaggaaga gaatggctgg ttgggtttat       900
     gtcaaggcac aaaaaattaa cattacgaaa accagagagc acaagcttgg gcagagcagc       960
     atgcttcaac caggcaaact tggatgcttt ttataacaac cttagagagg tgtaccaaca      1020
     acatagtttt cttcctcagg acatttggaa tgtggatgaa actggcgtaa caacactcca      1080
     ttctcagcca aaggtaatcg cttctaaagg atccaaacaa gttggacaaa ttgcttccgc      1140
     tgagaaaggc aaactagtca cggtctgttt cttcattaat gctctgggaa acacagtacc      1200
     gccagcattt gttttcccac taaagacttt cagagaggag aaattctttg gatgtccacc      1260
     aggcagtaaa gggctcgccc atccctcagg atggataaca aatgaaaact ttttaaaagt      1320
     tttaaagcac tttattgacc atgtaaagtg ttccaaagaa aagccagtat tgctactctt      1380
     ggacaatcat gaaactcatg taaatattga tgttattaat gaggcgaaga acaatggtgt      1440
     tgttttgttg agtttccccc catattgcag tcatcgcctc caacctctgg atgtgtctgt      1500
     ctttggtcca tttaaacaaa gctacaacag agcctgccag gattttatga ttcggcctga      1560
     aaatgcaggg agaccaataa atatttatca catcccacag ttagccacaa ttgcatataa      1620
     tagagccttc acaaggcaaa atgctgcttc cggatttgaa aaaactggta tctggccgtt      1680
     caatagccag gtattcacag atgttgacct gagaccagct acagttactg acaggcctgc      1740
     agaagaagta gcttccagtg ctgctcaaac cattaacaat caggaacccg gcagctcatc      1800
     atgtaatgtc ataaacctcg ctgatcaaac ttcatcgcaa acatcaccaa ttccaagcac      1860
     tcctaataat ccttcgagct ctgcaaagtc tgtaaaaagc acactgccag aagatgtttg      1920
     tccttatcca aaagctggac ctcggcaaaa aagtaacagg ggaagacaac ctggtaaaac      1980
     aagaatttta acaagcaccc ccgtcaaaaa acaaattgaa atggctgcag aagaaaagag      2040
     aaagaaggaa caagcacaag aagaaagacg aaagagaaaa agggagaaaa caaatgagtc      2100
     tggaatagtg gagaaaagaa gacctattaa aagaaggttg gatgaacttg aacaaataac      2160
     tgatgatgaa gatgtatttt cacttcacga ttctgattcg gaatgggcag aggaagaaga      2220
     agatttagat aatgtggcta ttaaagaagg ttgtcatgtt gtggcaaaaa tacatggtga      2280
     taaagctggc agtgctagaa attatgtttg tgaagtggtt aaagtgaaga aaagtkgctt      2340
     tgacgtgaaa tttttgaaga aacatggatt tacttcccga ttcwctgtta cwcgtgaagt      2400
     tgcttatgta scagaagagg atattatcgg wtgtttacca aaggctcaag tagattccag      2460
     agccagattc aaagacatgc tctatttcga gacagatctt gckagttaca gcatttttgc      2520
     ctaaatcttg ttgatattat gaggataatt atkcataatg tttagatwta atagtactac      2580
     tgaaataaag tttctcagag ttacttaaaa gacttttatt gttattaaag tgaacattgt      2640
     agttcaaaaa ggaccgtccc attcctcctg caagtgtgtc ccatcccacc cgcagagtgg      2700
     gagggatggg acatttagta ctgtaacaaa atatggttgt ttacttgtaa actttttaat      2760
     attcatacac tttgacacaa attatacctt cactaagggt agaattttaa aatctgacaa      2820
     ttgtctgctt cttaaataat acagatagca ttataaaaaa ttgaaaataa gaaatgtccc      2880
     atccctccac atcctcccct a                                                2901
//
ID   Mariner-22_SIn repbase;    DNA;    INV; 1553 BP.
XX
AC   .
XX
DT   06-FEB-2012 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-22_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1553
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 338-338 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. ~180bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           328..1443
FT                 /product="Mariner-22_SIn_1p"
FT                 /translation="MKIVFINMAAYSNIEWADIHYMYGRANGNCRKAQRFY
FT                 QQIFPQRRCPSKNTFSSVHRRLRETGSFLPNTVNRGRNRNIRTPAIEEQVI
FT                 RRVTENPRLSTRQIALEMQNVSSSTVWKILNEDLLYPYHIQRVQALLPADY
FT                 PSRVIFAQWYLQQCTFPNFEVSILFTDEANFSHDAIINHHNNHLWSYENPH
FT                 DIIESRHQHKFSCNVWAGIIGDFLLGPIFLPPTLNGNNYTQFLETQLPILL
FT                 EDVPLQIRNQMWFMQDGAPAHFSRIAREFLNNNYTNRWIGRRGPIAWPARS
FT                 PDLNPLDFYLWGHLKTIVYDTPVATVEVLRNRIIAACEKIRNTPGIFNVFD
FT                 NLCDVGAKHALMRKEIISSNFCKINKKCL"
XX
SQ   Sequence 1553 BP; 482 A; 314 C; 286 G; 471 T; 0 other;
     cagggtgttt ccgaaatagg tggccaaact ttaagagcat attctactcg ttgtaaggat        60
     gaaaaagagt catataaaca tgggtccgga aatgcttcct ttacaagtta taaacatttt       120
     ttattgattt tacagaaatt gctggaaatg atttccttcc gcatcaatgc atgctttctt       180
     tcctagttat aaacatgtct tatttacatt gtacgtattt acgtcggacg acatgccttg       240
     cttcgacatt caccttctaa agtaaacaaa aggtttttag ataggtctgt atggatttgg       300
     aatcagtctt tatttgagca tttacgaatg aagatagtat tcatcaacat ggcagcttat       360
     tctaacatcg aatgggcaga tatccattac atgtatgggc gggctaatgg aaactgcaga       420
     aaagctcaac gtttctatca acaaatcttt cctcaaaggc gatgccctag taaaaatacc       480
     tttagttcgg tccatcgccg acttagggaa acaggatctt tcttacccaa tacagttaat       540
     cgaggacgaa acagaaacat aagaacacct gcaatcgaag agcaagtgat tagacgagtc       600
     acagaaaatc caagacttag cacgagacag atcgcattag aaatgcaaaa cgtttcttcc       660
     tcaactgtgt ggaagatatt aaacgaagat cttttgtatc cctatcacat acaacgagta       720
     caagctctct taccagcgga ttatccatca cgagtaattt ttgctcagtg gtatttgcaa       780
     cagtgtactt ttccaaattt tgaagtgtcc atacttttca cagacgaagc aaatttttca       840
     cacgatgcta taataaatca tcataacaat cacctatggt catacgaaaa tccgcatgat       900
     attattgaat ctcggcatca acataagttt tcgtgcaatg tatgggctgg cattattgga       960
     gatttcctac ttggaccgat ttttcttcca cctacactta atggtaacaa ctacacacaa      1020
     tttctggaaa cgcaactccc tatattatta gaagacgttc ctctacagat acgcaatcaa      1080
     atgtggttca tgcaagatgg agctccagca catttcagcc gcattgctcg agagtttctg      1140
     aataataatt acaccaatag atggattggt agaagaggac ccatcgcttg gcctgcacgt      1200
     tctcccgatt tgaacccatt ggatttttac ttatggggac atcttaagac tatcgtgtat      1260
     gatactcctg ttgctactgt ggaagtactc cgaaatcgta ttatcgctgc gtgtgaaaaa      1320
     atacgaaata ctccgggaat ttttaacgtc ttcgacaatc tatgcgacgt cggtgcgaag      1380
     catgcattga tgcggaagga aatcatttcc agcaattttt gtaaaatcaa taaaaaatgt      1440
     ttataacttg taaaggaagc atttccggac ccatgtttat atgacttttt ttcatcctta      1500
     caatgagtag aatatgctct tacagtttgg ccacctattt cggaaacacc ctg             1553
//
ID   Mariner-23N1_LMi repbase;    DNA;    INV; 1003 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-23N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1003
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3264-3264 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1003 BP; 254 A; 254 C; 257 G; 238 T; 0 other;
     cgagggttgg aacttaaata gtggcaacac tgctgtggag acactatgca atggaatcta        60
     ctattgtcgc tgatagcaca cgttgttgac atacctacct tacctccgag caaatggact       120
     cgcccgtccc acgtcaccgg cgtgcgcaca atcgagggaa acacagtcac ttgtgagcga       180
     gcggtctaac gtaacggtgt cactatgttt tcgaaacagg aacaacggag ttggatcaag       240
     attgaatgtg ccagaggtcg tacagcacga cagtgtcatc aaggtcttca agaggcgtgc       300
     ggggaatcgg cattgccgta cagaacagtg gcacgttggg taaaagcctt caacgaaggt       360
     cggcaaactg tggcagacat gcatcgggca ggtcgtccta gcgtctctga agaagagtgc       420
     atactgttgc cgcgttagtg gacagtgatc gacgccagac gattcgtgag ttctcgtgta       480
     cgactgtgat ggtgttatcc taacgcatta cgttcctcca cggcagaccg tcaatgcaca       540
     gtattactgt tcgtttttgg agcatcacct gcgaccagct ttgcgaaaga agcggcaaca       600
     ctttctgcgc aacccaccca tcattttgca cgacaatgcg cgggcgcata cagcgcaagc       660
     tgtggctgct ctgttcggtc gatgggactg ggaagtactg taccatccac catactcccc       720
     ggacttaagt ccttgtgact ttgatttgat tccgaagatg aaggaaccac ttcgtggcat       780
     tcgcttcaga actgttccag agattcgaca ggcagtagac cgctccattc gcaccatcaa       840
     cagaacaggc tctgctaacg gtatactacg ccttccacat cgctggcaac gggttctaca       900
     caacgctggt gactactttg aaggacagta acaggtgcaa acatgtaacg cttttgtatc       960
     ggttgtgaat aaatagttgc cactatttaa gttccaaccc tcg                        1003
//
ID   Mariner-23_AEc repbase;    DNA;    INV; 1315 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-23_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1315
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 567-567 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           327..1259
FT                 /product="Mariner-23_AEc_1p"
FT                 /translation="MGGFKEGRESVDDDARAGRPSTSRVDENIQRVHDLVK
FT                 ADRRITTRMIAEKLGISNGSVQTILKEDLNMRKLCAKIVPKVLTDEQKQRR
FT                 VDCCNDWIENAQDSNFLKRVITGDESWIYEYDPETKRQSEEWKHRGSPRTK
FT                 KARKSRSKIKTMLIVFFDIRGVVHHEYVPEGESVNAKFYVEVLKRLRERVR
FT                 RTRPELWAENAWILHQDNAPSHTAFVTREFLAKNNITTIDHPPYSPDLAPC
FT                 DFYLFPKVKNIMRGEHFVAVDTIKRETTKLLKELTKEDMQHCFQEWEKRWT
FT                 KCILSRGEYFEGDHIPVTE"
XX
SQ   Sequence 1315 BP; 391 A; 257 C; 332 G; 335 T; 0 other;
     cgaggtgtgt acaaaaaatt cgtgcactga attttattct gccgacgtgg tgacgctgta        60
     agcttgtaca gtggtgcaac gtctcggggg aagcgtcacg tgtccttagt aaaagttagg       120
     tcacggtcga gtgagatctc tgcttttcgt gtctgttttt attaacgtac ttttggtcgt       180
     gttggcggaa tggagcgaga cgttttaacc gagcaaagaa ccaacatcaa atttctcgta       240
     aaacttggca aaaacggcca ggaaattctt caaatgttgg aaatggtgta tggtgagtct       300
     gccatgaagc gtagaactgt gtataaatgg gtgggttcaa ggagggaagg gagagcgtcg       360
     atgacgacgc acgagcgggg cgcccttcaa catcacgtgt cgatgagaac attcaacgtg       420
     ttcacgattt ggtgaaggca gaccgtcgaa ttaccactag aatgattgca gaaaaacttg       480
     gaataagtaa cggtagtgtt cagacaattt taaaagaaga tttaaacatg cggaagctgt       540
     gtgcaaaaat tgttccgaaa gttttgactg acgagcaaaa acaaagacgt gttgactgtt       600
     gcaatgactg gatcgaaaat gcccaagatt caaattttct caaaagggtg ataactggag       660
     acgaatcctg gatttacgag tatgatcctg aaacaaaaag gcagagtgaa gagtggaagc       720
     accgtggttc gcctcgcacc aaaaaagcgc gcaagagtcg ttcaaaaatc aagaccatgc       780
     tcatagtttt tttcgatatt cgtggagttg ttcatcatga atatgttcca gaaggtgaat       840
     ctgttaatgc aaaattctat gttgaagtct taaagcgtct gcgtgaacgt gtgcgacgta       900
     cacgacccga attgtgggcg gagaacgcat ggattctgca tcaggacaat gcaccttcgc       960
     acaccgcgtt cgttacgcgc gagtttttgg ccaaaaacaa tatcactacc atagaccacc      1020
     ctccctattc acctgatcta gcaccctgtg acttctacct gttccctaaa gtaaaaaata      1080
     tcatgcgggg tgaacatttt gtggctgttg ataccataaa acgagaaacg acgaagctcc      1140
     taaaggaact gacaaaggaa gacatgcagc actgctttca ggaatgggag aagcgttgga      1200
     ccaagtgtat tctgtcaagg ggagagtact tcgagggtga ccacatcccc gttacagaat      1260
     aatttaattt ggatttttgg tgaaccgagt gcacgaactt tttgtacaca cctcg           1315
//
ID   Mariner-23_DF repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-23_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1664
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 790-790 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 797-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1664 BP; 525 A; 308 C; 310 G; 521 T; 0 other;
     cagtggctca cagcttaaag tatgcagtgc atacttttaa ctttaaacgc ccatagcggt        60
     aaaactataa ggaatattgg aataaacaag gtgccaaatg aaagattaac ttatttagaa       120
     taacgtaaca aaatcattta ttttcaaaaa cggcttaaac acaaaaaaaa ctttaaaaat       180
     gaaaaataca gcttatattc agctcacagc ttattttatg cagtctcaaa aatgttcaaa       240
     aaataaggaa aaaactcaaa aatataacgt ttttaatatt tggtatggta accattgttg       300
     tcaacgacat ctttcagcct tttcggcatt gattcaacca atttttgggt gacttctgac       360
     gagatctttc cccactcctt cattagggca tcttttaaat catttttgtt agaaatatgg       420
     taatttctaa tattattatc caaaatggcc cataaatttt caataacgtt gaggtccggt       480
     gactgagccg gcgtatccac aacgtgaggg caattgtaca gcaaccacat ccgcacaatt       540
     ccagccttgt gctttggatc attatcctga taaaagcgga aattgtcttt tattccaaga       600
     tcctcggcac tttggaccaa attgtccttt aatatttgaa ggtatgcttt tttatccatt       660
     gtcgattcaa taaaagtcag ttttccaggg ccagcagctg acatacaggc ccaaaccatc       720
     acgctgccac cgccgtgctt taccgttgcc ttcaggttct ttggttcaag ctctgtattg       780
     ggcttccgcc atacacacga cttctggaaa agtgtgatat ttgcagacga atccaaattc       840
     aatatatttg gatcagacgg taacgcttat gtatggcgga agcccaatac agagcttgaa       900
     ccaaagaacc tgaaggcaac ggtaaagcac ggcggtggca gcgtgatggt ttgggcctgt       960
     atgtcagctg ctggccctgg aaaactgact tttattgaat cgacaatgga taaaaaagca      1020
     taccttcaaa tattaaagga caatttggtc caaagtgccg aggatcttgg aataaaagac      1080
     aatttccgct tttatcagga taatgatcca aagcacaagg ctggaattgt gcggatgtgg      1140
     ttgctgtaca attgccctca cgttgtggat acgccggctc agtcaccgga cctcaacgtt      1200
     attgaaaatt tatgggccat tttggataat aatattagaa attaccatat ttctaacaaa      1260
     aatgatttaa aagatgccct aatgaaggag tggggaaaga tctcgtcaga agtcacccaa      1320
     aaattggttg aatcaatgcc gaaaaggctg aaagatgtcg ttgacaacaa tggttaccat      1380
     accaaatatt aaaaacgtta tatttttgag ttttttcctt attttttgaa catttttgag      1440
     actgcataaa ataagctgtg agctgaatat aagctgtatt tttcattttt aaagtttttt      1500
     ttgtgtttaa gccgtttttg aaaataaatg attttgttac gttattctaa ataagttaat      1560
     ctttcatttg gcaccttgtt tattccaata ttccttatag ttttaccgct atgggcgttt      1620
     aaagttaaaa gtatgcactg catactttaa gctgtgagcc actg                       1664
//
ID   Mariner-23_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   04-APR-2012 (Rel. 19.04, Created)
DT   04-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-23_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 863-863 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-23_HSal_1p"
FT                 /translation="MESQHEHFRQVLLYYFRKGKNAVQACEKLRKVYGDEA
FT                 LKERQCQYWFARFRSGDYSVKDAPRSGRPSEVDDDKIKALVEANRRSTIRE
FT                 LAEALKISIGSVYLHLKQLGYVSKLDVWVPHELKEVHLIKRIDICDQLLKR
FT                 EQSDPFLKRMITGDEKWIVYNNVKRKRSWSKRDEPAQSTSKADIHQRKVML
FT                 SIWWDWKGVVFFELLPRNVTINSDVYCQQLDKLNEAIAEKRPELINRKGVV
FT                 FHHDNARPHTSLMTREKLLELGWDVLPHPPYSPDLAPSDYHLFRSLQNSLS
FT                 GKTFASDDAIERHLVQFFANTDRKFFENGIMKLTERWQKVIEQKGQYIID"
XX
SQ   Sequence 1287 BP; 395 A; 257 C; 292 G; 343 T; 0 other;
     ttgggttgtt caaaaagtca ttgcgtttat ttccgataga tggctttagt tgtatattta        60
     atgtattgaa cgcatctata aattcatgag cccatgcgcg tttgacagct gacacttata       120
     gcttccatca aggaaaaaag tgcgcgaatc gatcaacaat tattctttct ataacgtttt       180
     ggaaatggag agtcaacacg agcattttcg ccaagtttta ctttattact tccgaaaagg       240
     aaagaacgct gtgcaggctt gtgaaaagtt gcgtaaagtt tatggtgacg aagccctaaa       300
     agaacgccag tgtcaatatt ggtttgctcg tttccgttct ggtgactaca gcgtgaaaga       360
     tgcacctcgc tcaggtcggc catcggaggt tgatgatgat aaaataaagg cattagttga       420
     agctaatcga cgttctacca ttcgtgagct cgctgaggca ctaaaaatat cgattggaag       480
     cgtttacctt catttgaaac aacttggtta cgtcagtaag ctcgatgttt gggtcccgca       540
     tgaactgaaa gaagttcacc tcataaaacg catagacatc tgcgatcaac ttctgaaacg       600
     tgaacaatcc gacccatttc tgaaacgcat gattactggc gatgaaaaat ggattgtcta       660
     caacaatgtg aagcgaaagc gatcgtggag caagcgcgat gagccggccc aaagcacatc       720
     aaaagcagac atccaccaga gaaaggtgat gctctcaatc tggtgggatt ggaagggtgt       780
     ggtgtttttc gagctcttac caaggaatgt tacgatcaat tcggacgtgt actgtcaaca       840
     gctcgacaaa ttgaacgaag caatagcaga aaagcggcca gaattgataa atcgcaaagg       900
     agtggtcttc catcatgaca acgctcgacc acacacaagt ttgatgactc gcgaaaaatt       960
     gttggagctt ggttgggatg tgttgcctca tccaccgtat tcgccagacc ttgcaccatc      1020
     agactaccat ttgtttcggt ccttgcaaaa ctccttgagt ggaaaaacgt tcgcttcaga      1080
     tgacgctatc gaaaggcact tggttcagtt cttcgctaat acagatagga agtttttcga      1140
     gaatgggatc atgaagctta ccgaaagatg gcagaaggtc atcgaacaaa aagggcaata      1200
     tatcattgat taatgttcat tctttgtata aaataaacgg tcttgaaaat caccggaaaa      1260
     aacgcaatga ttttttgaac aacccaa                                          1287
//
ID   Mariner-23_LMi repbase;    DNA;    INV; 1329 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1329
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3265-3265 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           205..1254
FT                 /product="Mariner-23_LMi_1p"
FT                 /translation="MFSKQEQRSWIKIECARGRTARQCHQGLQEACGESAL
FT                 PYRTVARWVKAFNEGRQTVADMHRAGRPSVSEEEVHTVAALVDSDRRQTIR
FT                 ELAHETGLAHTTVLRILKERLGMRKIASRWVPHELTEMQKWMRYDAAQTHL
FT                 ERYEREGEAFLRRIVTLDETWATSYEPKLKRQSNEWRHYGSPRKSKVRQSP
FT                 SMVKVMVILVYDCDGVILTHYVPPRQTVNAQYYCSFLEHHLRPALRKKRQH
FT                 FLRNPPIILHDNARAHTAQAVAALFGRWDWEVLYHPPYSPDLSPCDFDLIP
FT                 KMKEPLRGIRFRTVPEIRQAVDRSIRTINRTGSANGILRLPHRWQRVLHNA
FT                 GDYFEGQ"
XX
SQ   Sequence 1329 BP; 345 A; 333 C; 350 G; 301 T; 0 other;
     cgagggttgg aacttaaata gtggcaacac tgctgtggag acactatgca atggaatcta        60
     ctattgtcgc tgatagcaca cgttgttgac atacctacct tacctccgag caaatggact       120
     cgcccgtccc acgtcaccgg cgtgcgcaca atcgagggaa acacagtcac ttgtgagcga       180
     gcggtctaac gtaacggtgt cactatgttt tcgaaacagg aacaacggag ttggatcaag       240
     attgaatgtg ccagaggtcg tacagcacga cagtgtcatc aaggtcttca agaggcgtgc       300
     ggggaatcgg cattgccgta cagaacagtg gcacgttggg taaaagcctt caacgaaggt       360
     cggcaaactg tggcagacat gcatcgggca ggtcgtccta gcgtctctga agaagaagtg       420
     catactgttg ccgcgttagt ggacagtgat cgacgccaga cgattcgtga gctcgcccac       480
     gaaaccggat tagcgcatac gactgtgctt cgcatcctga aggaacgcct gggcatgcga       540
     aaaattgcat cacgatgggt tccgcatgaa ttgacggaaa tgcagaaatg gatgcgttac       600
     gacgctgctc agacgcactt ggagcgctat gagcgcgaag gagaggcttt cttacgccgt       660
     atcgtaacac tggatgagac atgggccaca tcgtacgagc caaaactgaa acgccaatcc       720
     aacgaatggc gtcattatgg gtcgccgcga aagtcgaaag tgcgtcagag ccccagtatg       780
     gtgaaagtta tggtgattct cgtgtacgac tgtgatggtg ttatcctaac gcattacgtt       840
     cctccacggc agaccgtcaa tgcacagtat tactgttcgt ttttggagca tcacctgcga       900
     ccagctttgc gaaagaagcg gcaacacttt ctgcgcaacc cacccatcat tttgcacgac       960
     aatgcgcggg cgcatacagc gcaagctgtg gctgctctgt tcggtcgatg ggactgggaa      1020
     gtactgtacc atccaccata ctccccggac ttaagtcctt gtgactttga tttgattccg      1080
     aagatgaagg aaccacttcg tggcattcgc ttcagaactg ttccagagat tcgacaggca      1140
     gtagaccgct ccattcgcac catcaacaga acaggctctg ctaacggtat actacgcctt      1200
     ccacatcgct ggcaacgggt tctacacaac gctggtgact actttgaagg acagtaacag      1260
     gtgcaaacat gtaacgcttt tgtatcggtt gtgaataaat agttgccact atttaagttc      1320
     caaccctcg                                                              1329
//
ID   Mariner-23_RPr repbase;    DNA;    INV; 1559 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-23_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1559
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3270-3270 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1320
FT                 /product="Mariner-23_RPr_1p"
FT                 /translation="MDPLQGLRRHLSEFDVCRAVTLIEEGLGVREVGRRLG
FT                 VSHSVIQRLWGRYQETGGFTRRPGQGRPRSTSLNEDRFMRLQALRNRQTTS
FT                 PAIQSDLRRATGTVISAQTVRNRLREGGLRSRYPIKVPRLTRRHKIARHLF
FT                 ARDHRNWHIGQWRKVFFSDESKFTLYRNDGRMRVWRRGNERFLPCALQPTS
FT                 PFGGGSILVWAGISFTDKSDLVVFANGSLTAQRYINEVLRIHVRGRALTGG
FT                 DQFIFMHDGARPHTANVVREFINANNIQTLGWPACSPDLNPIEHLWDQLGQ
FT                 NIRNRPDPPRTLPELEQVLREEWERIPQQNIRRLIMSMPRRMHAVIQAHGG
FT                 NTRY"
XX
SQ   Sequence 1559 BP; 421 A; 334 C; 359 G; 445 T; 0 other;
     cacacggcaa aaaaattaaa gggccacttt gtattgtcgt tcttccaagt aaatgagtgc        60
     actctggaac atgttttgaa gagatataat tgtggttagg attaagataa accctcagac       120
     ctgtctcaag aggctattgt tttctttgac catttttctc cttgttatct tgaactttgt       180
     tcatattgac cgatatgggg ctatttctac tctatctcta tcagtcttta acgttgtgtc       240
     gtgcagtttt tactggtgtt tgctattgtt ttatgtgtta tggatcccct gcaaggttta       300
     aggcggcatc tttccgaatt tgacgtttgt agggctgtaa cattaattga ggaaggccta       360
     ggagtgcggg aagtaggccg gcgattggga gtgagtcatt ctgtaatcca gcgattatgg       420
     gggagatacc aggagacagg aggattcacg agacgaccag ggcagggccg gccaagatcc       480
     acttcattaa atgaggaccg attcatgcgg ctacaagccc tcagaaatcg ccaaaccacc       540
     tcacctgcta tccaaagtga cctcaggcgt gccacaggaa ccgtgatttc tgctcaaacc       600
     gttcgtaatc ggttgaggga aggtggcctg cgttccaggt acccgataaa agtgccacgg       660
     ttgaccagaa ggcacaaaat cgccagacat ctgtttgcca gggaccatcg caattggcac       720
     atcgggcaat ggaggaaagt tttcttctct gatgagtcca aatttactct gtacagaaat       780
     gatgggcgaa tgagagtatg gagacgagga aacgaacgtt ttctcccttg tgcactacaa       840
     ccaacgtcac catttggcgg cggatcaatt ttggtttggg caggaatttc tttcaccgac       900
     aaaagtgact tggttgtgtt cgcgaatgga agtttgacag ctcagcggta catcaatgaa       960
     gtgttacgaa tccacgtccg cggaagagca cttactggtg gagatcaatt cattttcatg      1020
     catgatggag cccgccctca tactgcaaat gtggtacgtg agttcataaa tgccaataac      1080
     attcagactc tcggctggcc agcttgtagc ccggatttga atccgattga acacttatgg      1140
     gaccagctgg ggcaaaacat tcgcaatcgt cctgacccgc cacggacatt accagagctg      1200
     gaacaagtcc taagagaaga atgggaaaga attccacaac aaaacatcag gcgcctaata      1260
     atgagcatgc caagacgtat gcatgctgtt attcaagctc acggtggcaa tacgaggtac      1320
     tgagcacgca atcaaaaaga atttcaaatt tttctgtatt aacttttttt aaatttttgc      1380
     acaattttaa taaattttgt cttgtgtaaa aatttatctc ataaattggc ataacttctt      1440
     ttccccatca ctattaacac tcctctctgc actaataaca aagtgttgtc agccttattc      1500
     ttctaaacag gttgtactgt gggcttcttc cagtggccct ttaatttttt tgctgtgtg       1559
//
ID   Mariner-23_SIn repbase;    DNA;    INV; 1278 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.02, Created)
DT   10-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-23_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1278
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 339-339 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1199
FT                 /product="Mariner-23_SIn_1p"
FT                 /translation="MERDKVFFRHVLLHYFDLKKSVAEVHRLLEEGYGDQA
FT                 PSHTTCKEWYRRFKSNDFDVNDKPRSGQPKKFEDDELLALLHENSARTLEE
FT                 LGNELGVTEAAVSKRLHAMGKIQKEGKWVPHELSESAIHNRFNITVSLLAR
FT                 QKKKSFLWRIVTGDEKWIYYDNPKRKKSWVDPGQPSTSQPKRNIHGHKVML
FT                 CIWWDQQGVLYYELLKPNETVTADVYKRQLNKLNDELLRKRPAIASNRRKV
FT                 ILLHDNARPHTGKIVKETLTQLEWETLPHPAYSPDIAPSDYHLFRSMQHGL
FT                 SGTRFRNVEEVREWVDEWIASKPTSFYRDGIAQLPERWKKVVESDGKYFH"
XX
SQ   Sequence 1278 BP; 412 A; 253 C; 278 G; 335 T; 0 other;
     ttaggacctt aacttagttt ccgcccgcaa atgttagatg gcgatgtaaa cagttctagt        60
     agtcattact aacgcatctg gtactttttt cttagttttg acatttctcg ataacattca       120
     gtcagcatac acaattattt gcgtaaacaa caattttttt tgctttgtga aaaatggaac       180
     gcgataaagt gttttttcga catgtgcttt tgcactactt tgatttgaaa aaaagtgtag       240
     cagaagttca tcgattactt gaagaaggtt atggtgatca agctccatcg catacaacat       300
     gtaaagagtg gtatagacga ttcaaaagta atgattttga tgtcaatgac aaaccacgct       360
     caggacagcc gaaaaaattc gaagacgatg aattgctagc attattgcat gaaaactcag       420
     ctcgaacgtt agaagaactt ggaaacgagc taggagttac tgaagcagct gtttccaaac       480
     gtttacacgc catgggaaag atccaaaagg aaggaaaatg ggtaccacat gaattgtctg       540
     aaagtgccat tcacaaccgt ttcaatatca cggtttcctt gcttgccagg caaaaaaaga       600
     agagttttct gtggcgtatt gtgactggcg atgaaaagtg gatctactac gacaatccca       660
     aacgcaagaa atcatgggta gacccaggac aaccatcaac atcgcagcca aaacggaaca       720
     tccacggtca taaggtaatg ctttgcattt ggtgggatca gcaaggagtg ctgtactacg       780
     agctgctgaa accgaacgaa actgttactg ccgatgtcta caaacgtcaa ttgaacaaat       840
     tgaatgatga gctgttgcga aaaagaccag caatagcgag taacaggcgc aaagttattc       900
     tccttcacga taacgctcgg ccacacactg gaaaaatcgt caaggaaaca ctgacgcagc       960
     tcgaatggga aactcttcct cacccagcgt actcaccaga catagcgcct tctgattacc      1020
     acttgttcag atcgatgcag cacggcttga gtggtacacg cttccgaaat gttgaagaag      1080
     tgcgagaatg ggtggacgaa tggattgctt cgaaaccgac atcgttttat cgagatggta      1140
     tcgcccagtt gccagaaaga tggaaaaaag ttgtagaaag tgatggaaaa tactttcatt      1200
     gaaataattt gtacaaattt tttccaataa atgctttttc tcagcctttt tcgggcggaa      1260
     actaagttaa ggtcctaa                                                    1278
//
ID   Mariner-24N1_AEc repbase;    DNA;    INV; 910 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-24N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-910
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 568-568 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 910 BP; 261 A; 183 C; 224 G; 242 T; 0 other;
     cgagggcaaa tcaataagta cccgtgtttc aagacaggcg acgttgctga tgcaagttgg        60
     cattaccatc gtgtactacc atctttcaaa cgacgccata caaaatttca gagtgattca       120
     tgcaatagtc ttgatttgac agcaattcgt agtgagcgtg tttgatgttt tccgatacaa       180
     tggaaaaaga gcaatatcga tccgtgattc gtttcttatt tttggatgga aaaacgtgcg       240
     aagaaataaa aacgaagttg gatgccgtct atgggaactc ttcaccatct atgacaaccg       300
     tcagatattg gttcaacgaa ttcaaacgtg gtcgttcgtc tgtttttgat gaggagcgcc       360
     caggccgccc ggcagacgtg gttactgagg aaatcgttga aaaagtccac gacatgattc       420
     tcgctgatcg ccgaacgaaa gtgcatgaag tagcagaggc cgtaggcgtg tcgtacggaa       480
     cggcattcaa tattttgcat gataacttgg gaatgaaaaa gctgtcggcc cgatgggtgc       540
     cgcgattgct cacggtggac aacaagcgga tgcggttatc aatttcaaag catggtcgaa       600
     ttgcgctacg aattgctgcc gcatccaccg tactctccgg atttagcccc ctgtgacttc       660
     ttcttgtttc caaacttgaa aaaatggctc ggtggaaaga aattcacgtc gaatgaggag       720
     gtcatcgccg aaacagaggc ctattttgca gagttcgaca aatcgtattt ttctgagggg       780
     ttaaaaaaat ggcagaagcg ttgggaaaag tgtatcctcc taaaagggga ttacgttgaa       840
     aaataaaaaa aatttttgtg aaaagcttgc gtcttcatta ctaacacggg tacttattga       900
     tttgccctcg                                                              910
//
ID   Mariner-24_AEc repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-24_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 569-569 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 1288 BP; 370 A; 271 C; 320 G; 327 T; 0 other;
     cgagggcaaa tcaataagta cccgtgtttc aagacaggcg acgttgctga tgcaagttgg        60
     cattactatc gtgtactacc atctttcaaa cgacgccata caaaatttca gagtgattca       120
     tgcaatagtc ttgatttgac agcaattcgt agtgagcgtg tttgatgttt tccgatacaa       180
     tggaaaaaga gcaatatcga tccgtgattc gtttcttatt tttggatgga aaaacgtgcg       240
     aagaaataaa aacgaagttg gatgccgtct atgggaactc ttcaccatct atgacaaccg       300
     tcagatattg gttcaacgaa ttcaaacgtg gtcgttcgtc tgtttttgat gaggagcgcc       360
     caggccgccc ggcagacgtg gttactgagg aaatcgttga aaaagtccac gacatgattc       420
     tcgctgatcg ccgaacgaaa gtgcatgaag tagcagaggc cgtaggcgtg tcgtacggaa       480
     cggcattcaa tattttgcat gataacttgg gaatgaaaaa ctgtcggccc gatgggtgcc       540
     gcgattgctc acggtggaca acaagcggat gcggttatca atttcgaagc agtgtttgga       600
     gctgttcaag cgcaatccga acgagttttt gcgtcgagtc gtaaccgttg atgaaacatg       660
     gattcattac tacacaccgg agaccaagca acagtcaaaa cagtggacct tacccggcga       720
     acgtgctccg aagaaggcca agacggtccc atcggccgga aaagtgatgg ccactgtttt       780
     ttggaatgcg caaggcgtga tcttcatcga ctacataggg aaaggaaaaa ctatcatggg       840
     gcagtactat gctgacttat tgggccgatt cgatgttgaa ttgaagaaaa aacgtcccca       900
     tttggcgaaa aaaaaagtgt tgttccatca ggacgatgcg ctcactcctc cgcagtcgcc       960
     acagccaaat tggtcgaatt gcgctacgaa ttgctgccgc atccaccgta ctctccggat      1020
     ttagccccct gtgacttctt cttgtttcca aacttgaaaa aatggctcgg tggaaagaaa      1080
     ttcacgtcga atgaggaggt catcgccgaa acagaggcct attttgcaga gttcgacaaa      1140
     tcgtattttt ctgaggggtt aaaaaaatgg cagaagcgtt gggaaaagtg tatcctccta      1200
     aaaggggatt acgttgaaaa ataaaaaaaa tttttgtgaa aagcttgcgt cttcattact      1260
     aacacgggta cttattgatt tgccctcg                                         1288
//
ID   Mariner-24_DF repbase;    DNA;    INV; 1653 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-24_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1653
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 791-791 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 30-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1653 BP; 593 A; 286 C; 316 G; 455 T; 3 other;
     cagtcagtca caaaagtatt cgttgcaaag agggttaaga gaaaaatgca aattttaaat        60
     aagaaacagt tttaaaatgg taaaaaatgg tttacgtttc caaagatata tattttgtga       120
     agtatgtgga aaaaaaaacc aaacagaaaa cgctttccat aaaaagatat ggacaaaaat       180
     acaaatataa accgttttgc agggtcacaa aagtattcgt tgccttacga attttttata       240
     ttttagtatt ttttaagtta gcgaattatt tttttttgtc attttggttg cgtttctatt       300
     ttaaagactg aattcgggga aaaacaccat tttttggcgt cattcttggt gtaaatctct       360
     agcaaaatgc cgaagggaac agagttaaac ttttcacaaa aaaaaattat tttgcaccta       420
     cataatgaag gtcgatccat taaatatatt tgtgggatgt tcgatagaag tccttcaacc       480
     ataaggagtc tcatttctcg actgaaatcc aggaattccc tggaaaatct tccccgttgc       540
     ggccgtccga aagcattaac ctgcagagaa gagcggaaaa tcctcgaaga aaacaagaaa       600
     aatccgcacc tttcggctcc gaaaattaat agtgtcctaa ccacatccct gggaactaac       660
     gtatccactg aaaccgtccg aagagtgctc aggagccaag atctgcatgg gagatgccct       720
     agaaagaaac ccttgctctc agccataaat atatcaaagc ggctttcttt tgctaaaacg       780
     tatttagacc ggaatttgga gtactgggac aagtaatatt tagcgttgaa accaaattca       840
     atatattcgg atctgatgga aaaggaaaag tgtggcgaaa gccctgtgaa gagcttaaac       900
     tgaaaaatgt taaaccaacg gtgaagcatg gcggcggttc cgtattagtt tggggctgca       960
     tgtccgctca aggagttgga gagttggctt ttcatagacg gaattatgaa tgctgaagga      1020
     tatctcaaaa tattaaagga aaatttacac tccagtgcca ccaaaatggg tctagaaggc      1080
     ggcaagttca ttttccaaca ggacaatgat cccaaacata cggcttggaa agtcaagaaa      1140
     tggctgttgt ttaataccaa gcagatccac actcctccac aaagcccaga cgtcaaccct      1200
     attgaaaatc tttgggccca tcttaagcta aaagtccagg aacataagat ttcctccaag      1260
     aatgagctaa aagagatatt gctgaaggaa tggtcgaata tacccgaagt gaggtgccga      1320
     aaactastgg agtcaaagcc gaggcgctta caasctatta aagaaaacaa cggcttgcac      1380
     acaaaatact aaatttaaaa aaaacataaa tatttaatgc cgaaacaaaa aaacgaatac      1440
     ttttgtgaga cgatattttg aagttctmtt attttctaaa ggaaaaaaaa gcaatgaagc      1500
     taattttcta aaaaaatttt gttatttttt gtatgtttaa taagtgcgtt accccaaaca      1560
     ataaataaaa atattaattt gttacatatt cattaaaaaa aacatgtatt tagttgtagg      1620
     gtgcctcgca acgaatactt ttgtgactga ctg                                   1653
//
ID   Mariner-24_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-24_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 864-864 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1207
FT                 /product="Mariner-24_HSal_1p"
FT                 /translation="MSSFVPENVHLRHALLFLFNQKKKAAESHRLLVETYG
FT                 EHAPTIRTCETWFRQFKCGDFNVQDKKRPGRPKTFEDAELQELLDEDPTQT
FT                 QKQLAEKLNVSRVAICERLQAMGKIQKMGRWVPHELNDRQLENRKIVSEML
FT                 LQRYERKSFLHRIVTGDEKWIYFENPKRKKSWLSPGEGGPSTARPNRFGRK
FT                 TMLCVWWDQVGVVYYELLKPGETVNTDRYQQQMINLNCALIEKRPQYAQRH
FT                 DKVILQHDNAPSHTAKPVKEVLKSLGWEVLSHPPYSPDLAPSDYHLFASMG
FT                 HALAEQYFADFEEVKKWLDEWFSSKEKQFFWNGIHKLPERWAKCIESNGQY
FT                 FE"
XX
SQ   Sequence 1287 BP; 426 A; 242 C; 282 G; 337 T; 0 other;
     ccaggtatgt cggtaattac ttttcggttt ttttaacaga tgtcactagc cataagtatg        60
     caatgttatg atttgataca tatgtcattt tattctactg acattaacct caaaactaca       120
     caagttacgt tccgccaaaa taacagcgtt atagattaat aattttttga aaatgtcgag       180
     ttttgtgcct gaaaacgtgc atttgcggca cgcattactt ttcttgttta atcaaaagaa       240
     aaaagccgct gaaagtcatc gtttgctggt agagacttac ggtgagcatg ctccaaccat       300
     aagaacatgt gaaacgtggt ttcgacaatt caaatgtggt gatttcaacg ttcaagacaa       360
     aaaacgtcct ggtaggccga aaacgtttga agatgcggaa ttgcaggagt tattggatga       420
     agacccaaca caaactcaaa aacaattggc agaaaagttg aatgtgagcc gagtagcaat       480
     ttgtgaacga ttacaagcga tgggaaagat ccaaaagatg ggaagatggg tgccacatga       540
     attgaatgac aggcaattgg aaaatcgaaa aatcgtcagt gaaatgctgc ttcaaaggta       600
     tgaaaggaag tcatttctgc atcgaatagt aacgggtgat gaaaaatgga tttatttcga       660
     aaatcccaag cgaaaaaaat catggttatc acctggcgaa ggcggcccat cgactgcaag       720
     gccaaatcgc tttggtcgca agaccatgct ctgtgtctgg tgggaccagg ttggtgtcgt       780
     atattatgaa ctgttgaaac ctggagaaac agttaatact gatcgctacc aacaacaaat       840
     gatcaatttg aactgtgcat tgatcgaaaa acgtccacaa tacgctcaaa gacatgataa       900
     ggtgattttg cagcatgaca acgcgccgtc tcatacagca aaaccagtca aagaagtgtt       960
     gaaatcactt ggatgggaag ttttatcgca cccgccgtac tctccagacc tggctccatc      1020
     cgactaccac cttttcgcat cgatggggca cgcgcttgca gagcagtact tcgccgattt      1080
     cgaagaagtt aaaaaatggc tcgatgaatg gtttagctca aaggagaaac agttcttttg      1140
     gaatggcatc cataaattgc ctgagagatg ggcaaaatgt atagaatcaa atggccaata      1200
     ctttgaataa atatatttta actatccatt gtaaataacg tgttttcttt agcgaaaaaa      1260
     ccggaaagga attaccgaca cacctgg                                          1287
//
ID   Mariner-24_LMi repbase;    DNA;    INV; 1872 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1872
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3266-3266 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(225..515,519..668,668..1480)
FT                 /product="Mariner-24_LMi_1p"
FT                 /translation="MYSSEDYTDMILIYGETHCNASAARRLYSQRFPTRRL
FT                 PSAHVFRRTEMRLRTEGAFQVQRVVERPIRDAPDVSQNVIEYFGAHPTRGK
FT                 HTLNENNTYLRSINKNVIVLLNLGYSIICTHNYNNNMIIVINITQVISYHP
FT                 LIPISHRNLGQRRAAAELGVSRSSVQRILKERKWHPFKVHLHQQLYGNDFQ
FT                 NRVSFCRLLLNKVGVNPNFIRQILWGDECYFANDATVNRHNLHYWAPANPH
FT                 WLRPHHMQAHWGVNVWCGILGDHIIGPVYLPPRLTGRQYLQFLQNELDLGR
FT                 LLEDIPLQLAVRHWFQHDGAPPHYCRGVREYLNNVYPERWIGRGGFIQWPA
FT                 RSPDLTPLDFFLWGYIKSRIYDTEPENPDVLKERIRHACASVPAEMLRAVH
FT                 ANTERRLHQCIQQGGHAFEHLYYD"
XX
SQ   Sequence 1872 BP; 518 A; 403 C; 423 G; 528 T; 0 other;
     ccaggtggcc cacggacgcc gtccttttta gttttatgtt tcccgcatac gttagtgcaa        60
     gacgtgttgc cttgtccaaa ggggaagtgc acttacaagc gaacctccac tgagctgtgc       120
     cgccatctgt gtacgttttc ctcctggttt cgctctgaca aggtcgcgtg gccgtccggt       180
     agtagttcga gtgaggtctt acagtcaaac aggtaactac tgcaatgtat tccagcgaag       240
     actacacaga tatgatactg atatatgggg agacgcactg caatgcatcc gcggcccgaa       300
     ggctgtattc acaacgtttt ccaacgcgac gtctaccttc tgcgcacgtt ttcaggcgta       360
     cagagatgcg tttaagaacc gagggtgctt tccaggtcca acgtgtcgtg gaaagaccaa       420
     tccgcgacgc acctgatgtt tcccagaacg ttattgagta ttttggagca catcccacgc       480
     gaggtaagca taccttaaat gaaaataata cgtactaact acgtagtata aacaaaaatg       540
     ttatcgtgct acttaattta ggttacagta ttatttgtac tcataattat aataataata       600
     tgatcattgt tattaatatt acgcaagtca ttagctatca cccactaata cctatttccc       660
     atcgtaatta ggacaaagaa gagctgcagc agagctgggg gtttcgaggt cttcggtaca       720
     aaggatactg aaggaacgaa aatggcatcc ctttaaggtg cacctacacc aacagctgta       780
     tggaaacgat ttccaaaatc gggtatcgtt ctgcagactt ctgttaaata aagtaggcgt       840
     aaatccgaac ttcatcaggc agattttatg gggagatgaa tgctatttcg ccaatgacgc       900
     cactgtgaat agacataatc tacattactg ggctcctgca aatcctcact ggttacgacc       960
     acatcacatg caagcgcact ggggtgttaa cgtatggtgc gggattctag gagaccacat      1020
     cattggacca gtttatttgc ctcccagact aactggtcgg cagtatttgc agttcctaca      1080
     gaatgagctg gaccttggac gtctcctaga agacatccca cttcagttag ctgtgaggca      1140
     ctggtttcag cacgatggtg caccacccca ttattgtaga ggggttaggg aatatctgaa      1200
     caatgtgtac cccgaacggt ggataggtcg tggtggtttc attcaatggc cagcgagatc      1260
     gcctgattta acgcccttgg attttttctt atggggatac atcaaatcca ggatttacga      1320
     cacggaaccg gaaaatccag atgtgttgaa agaacgaata cgtcatgctt gcgcttcagt      1380
     accagcagaa atgttaagag ctgtccatgc taataccgag aggcgcttac accagtgtat      1440
     ccaacaaggt ggacatgcat ttgaacattt gtattatgac taatgtaata atgaaaatgt      1500
     gtcagtctat aacataggtt tatcacatca tgcattatat tcattactct ttattgaaat      1560
     taaagataga ataccattta tttcatattg cccattgtga atcacgaatt gttgcatcat      1620
     atgttggtta taaattagtg ttgtttataa agtagcaccc ctcctacagc aagcaagttg      1680
     tctagtgacg aactgtagga gaaattatag ctgtaaatta tgtgttttca agcgccagta      1740
     ttaggtttag aaaggtctcc tccctgttga tttggagtcc cctgtactta tctggttagg      1800
     caatcctttc ggcgtctgtg gtatccggga ttaactaacg tcaaaaaagg acggcgtccg      1860
     tgggccacct gg                                                          1872
//
ID   Mariner-24_RPr repbase;    DNA;    INV; 1563 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-24_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1563
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3271-3271 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(327..632,636..1139,1143..1325)
FT                 /product="Mariner-24_RPr_1p"
FT                 /translation="MPGGIQLCETEQQRIIDLKRVGMTQRQIASDLNRSQG
FT                 VIKNFLKLGQENYGKNKRTGRPPRFSSYVKRAVLREISKTGASSAQIVKRF
FT                 NLGCDASLIRKWIATRYLKYRKITRKLQLKKHHLKRRLHFAEKHIQESEIW
FT                 SRVIFSDEKMFNLDGHDGFNYYWHDIRKEKKKFSRRSHWVGGVMVWAAFNE
FT                 KGKSQIAFITGKMNAVSYQKVLEEFLLPFITLLEEEEIIFHQDNAPIHKAR
FT                 STKQWFEDFGPNILNWSAVSPDLNPIENLGLMAREVYDFQKPEIQNVKELK
FT                 ERITKAWENIPEDILIKLVXSVPRRLLEVIKKRGGRSNY"
XX
SQ   Sequence 1563 BP; 561 A; 237 C; 289 G; 475 T; 1 other;
     cagtcctgtg aaaaagtata aactcactag ataaaattga aatattttta aatctgtaca        60
     acaatactat tatttaaact gtatttcata ttaatactat gtcagaaagc actcaaaggt       120
     cattattcta gttgataatc taacaataag aaaaccgtat catgaaaaca tatcttatgt       180
     acgctgaagc tgtgaataaa tataaactca atgttttgat caaggtttat ttttaactta       240
     attttatgtt tttgaaagaa tatcaattca gttcaccttt ttatataaaa gagtaagtat       300
     tcgtgttgat tttcttaatt taaaatatgc cgggcgggat tcaattatgt gaaactgagc       360
     aacaaagaat aatcgactta aaaagagtcg gcatgacaca aaggcaaatc gctagtgatc       420
     taaaccgctc ccaaggtgtg attaaaaact ttttaaagtt aggccaagaa aattatggaa       480
     aaaataaaag aactggaagg cctccaagat tttccagtta tgtgaaacgc gccgttttaa       540
     gagaaatttc aaaaactggt gcttcttctg ctcagattgt gaagcgattc aacctagggt       600
     gtgatgccag cttaatacgg aagtggatag cttaaaccag gtatttaaaa tatcgtaaaa       660
     ttacaagaaa actgcagctc aaaaaacatc atttaaaacg gcgcttgcac tttgctgaaa       720
     aacacatcca ggaaagcgaa atttggtcca gggtgatttt cagtgacgaa aaaatgttta       780
     atcttgatgg ccacgacggt ttcaactatt actggcacga cataagaaag gagaaaaaaa       840
     aattctctcg aaggtcacat tgggttggtg gagtgatggt ttgggctgct ttcaatgaaa       900
     agggcaagtc tcaaattgca ttcatcactg gcaaaatgaa tgcagttagt tatcaaaaag       960
     tgttggaaga atttcttttg ccttttatta cattactaga agaagaagag ataattttcc      1020
     atcaagataa tgcaccgatt cacaaagcaa ggtccacaaa acagtggttt gaggatttcg      1080
     ggcccaatat tttgaattgg tcggctgtta gtccagatct taaccctatt gaaaatttgt      1140
     gagggctcat ggcaagggag gtctatgact ttcagaagcc agagatccaa aatgtcaaag      1200
     aactcaaaga aaggatcaca aaagcttggg aaaacatccc agaggacatt ttgataaagt      1260
     tagtaawaag tgttcccaga aggctgttgg aggtaattaa aaaacgtggg ggaagatcta      1320
     attattaaaa ggtattctca cttaaaacat tttgagttta taatttttca catctgtttt      1380
     tactattttg ttacattttc tagctaatcc aggcaatgta ttctgactaa caataaaatt      1440
     gtcacaaatc atgcaaacta tattatcaag gtattatatt ttgttaaata cattcagaat      1500
     agaagcttaa aaacagttag agaagatttt ttcatcttga gtttatactt tttcacagga      1560
     ctg                                                                    1563
//
ID   Mariner-24_SIn repbase;    DNA;    INV; 1270 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.02, Created)
DT   10-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-24_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1270
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 340-340 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~30bp TIR.
XX
SQ   Sequence 1270 BP; 424 A; 227 C; 251 G; 368 T; 0 other;
     ttgggttgtt cggaaagtaa tttcgttttt tcccaacaga gggcaacttc acacttaagc        60
     cgcataatca ttatatattt tgacagctga tatagcaagg cttgcttgtg aaaaagttcg       120
     attgattcta cgcagtagtt tttgtttggt gccctatcaa atatggaaag taaaaagcag       180
     cattttcggc atattttact tttttactat cgaaaaggta aaaatgctgt tcaagcaaga       240
     aaaaaattat ccgatgtgta tggagaagat gtattgacag aacgccagtg ccaaaactgg       300
     tttgcaaaat ttcgatccgg caattttgat gttgaagatg caccacgttc tggaaggcca       360
     gttgaagctg atgaagacac aataaaggca ttaattgatg caaaccggcg aataacaact       420
     cgtgagatcg ctgagaggtt aggtttatcg aattcgaccg ttcatgatca tttgaaacgc       480
     ctaggtttaa tctcaaagct cgacatatgg gttcctcatg ttcttacgga aagaaatctg       540
     tgccgtcgcg ttgacgtctg tgatttgctt ctcaaacgtc aagaaaatga tccatttttg       600
     aagcgcatca tcactgggga cgagaaatgg gttgtctaca acaatgttaa acgcaagaga       660
     tcatggagta aaaaagatga accggctcaa agcacttcga aagccgatat tcatcaaaaa       720
     aaggtgatgc tatctgtttg gtgggatttc aaagaaatct tttttttttt gagcttctac       780
     cggacaacac aacgatcaat tctgaagtgt actgtcatca gctggacaaa ttgaatgatt       840
     cacttaaaca gaaaaggcca gaattgatca atagaaaagg tgtagtgttc caccaagata       900
     atgcgagacc tcatacaagt ttggtaactc gtcaaaagct tttacagctt ggatgggata       960
     tactgccaca cccaccatat tctccagatc tggcaccttc tgattattat ttgttccggt      1020
     ctctacaaaa ttttttagac ggtaaaacct ttacttcaaa tgaggaagtc aaaaatcatc      1080
     tggatcagtt ttttgccagc aaagaacaaa aattttatga gcgtggaatc atgctactgc      1140
     cagaaagatg gcaaaaggta ttggaccaga atggacaata tataattcaa taaaatattt      1200
     attcactata agaaaatcgt ctttcatttt cataaaaaaa aaaaacgaaa ttactttccg      1260
     aacaacctaa                                                             1270
//
ID   Mariner-25_AEc repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-25_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 570-570 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(176..310,314..847,851..1225)
FT                 /product="Mariner-25_AEc_1p"
FT                 /translation="MELTRENFRAMIYYDFRRGLSRQECIDQLTSTFGDKA
FT                 PSFATVKRYNEFNRGRCSLTDESREGHPKSVVMSENIDAVQKLIMQDRHVT
FT                 YCEIETTLGISSTSIYKILHDHLAVKKVCSRWISHNLTKSQKDARVDWCKQ
FT                 MLKKYNGGASKDVYKIVTGDESWIYAYEPETKQQSTVWVFQDEPNPTKVVR
FT                 ARSTSKQMVACFFGKTGHVATVPLEERRTVNSEYTTICLPEVFGEIRKTNK
FT                 RRRIILHQDNASCHTSRLTTDYLSTQKIKLMGHPPYSPDLAPNDFFLFPNV
FT                 KNKLRGQRFSSAEEAVDAFKNHVLEVSEAEWKKCFDKWFERMQKCIDHKGE
FT                 YFEKQ"
XX
SQ   Sequence 1294 BP; 408 A; 248 C; 269 G; 369 T; 0 other;
     cgaggggcac tacttatatt ttgagccttg gcaacactga gtgtcgtcag gtgccatctg        60
     acgttttcat tacaaagttt gatatttttg accacaacct tcttcagaac gttttgttat       120
     ttgagcgcga tttgtattgt ttacagttac ttgaaaattg cgtctcagcg aaaaaatgga       180
     attaactcgt gaaaattttc gtgcaatgat ttattacgac tttcgacgtg gattatcaag       240
     acaggagtgc atcgatcaac ttacttccac ttttggcgat aaagccccat cctttgccac       300
     tgtgaaacgc tgatataacg aatttaatcg tggtcgctgt tcgctcaccg acgaaagtcg       360
     tgaaggtcat ccaaaatcag ttgttatgtc agaaaacatt gatgctgtgc aaaaactaat       420
     aatgcaagat cgtcatgtga catactgcga gattgagaca accttaggca ttagttccac       480
     cagcatatat aaaatattgc atgatcattt agccgtgaaa aaggtttgtt ctcgttggat       540
     ctcacataat ctgacaaaat ctcaaaaaga tgctcgtgtc gattggtgca aacaaatgct       600
     taagaaatac aatggcggtg cttcaaaaga cgtgtataag attgtaacag gtgacgaatc       660
     atggatctat gcgtatgagc cggaaactaa acagcagtcg actgtatggg tgtttcaaga       720
     tgaaccaaat ccaacaaaag ttgttcgcgc tcgaagcact tcgaaacaaa tggtcgcctg       780
     ttttttcgga aaaactggtc atgtggcaac agtgccttta gaggaacgta gaacggtcaa       840
     ttctgaatga tacacaacca tttgtttgcc ggaagtcttc ggtgaaataa ggaaaacaaa       900
     caagcgccgc cggatcattc ttcatcaaga caatgccagt tgtcacacat ctcgtctaac       960
     aaccgactat ttgagcactc aaaaaatcaa attaatgggt catccgccgt acagtcctga      1020
     tttggcacca aatgacttct ttttgttccc gaacgtcaag aataaattgc gtggacaacg      1080
     attttcgtcg gcagaagaag ccgttgatgc attcaaaaac catgttttgg aggtgtctga      1140
     agcggaatgg aaaaaatgct ttgacaagtg gttcgaacgc atgcagaagt gtatagatca      1200
     taaaggagaa tattttgaaa aacaataaag tcattttcaa tgacaaatta ctgttttttt      1260
     atttttaggc tcaaaatata aatagtgccc tacg                                  1294
//
ID   Mariner-25_DF repbase;    DNA;    INV; 1608 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-25_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1608
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 792-792 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1608 BP; 553 A; 266 C; 295 G; 492 T; 2 other;
     cctcagggaa agaagtatat gtgcactttt taatttgctt gtattttctc taaagttaag        60
     ggtacagttt ttgtaagtac gcagttttgt attcttatcc tttatgaaca tatcctaatt       120
     caacggtcct ctttggactt cattcgttgt accgtttcta agaacatgtg ctgaaacttg       180
     tgattttaat aggaaataag tatatgtgca tattgagatt attctgttat tgatagcgag       240
     taagctaaga agtgtgatct aaaaatattt tttagtcagc ggaacgtaag taaaatatat       300
     tttttatctt tgtataataa aataatwaat atttagtttg attttacggt aaaatgccac       360
     gtggtttaca tttgtcagag gaagatcgcg gcatgatcaa aggactggct gaatctggcc       420
     agaccatttc wtatattgct gccagattaa ataggcacag gaatacaatt agtaacttcc       480
     ttaaaaatcc agaaagttat ggaaaaataa agcgaaacgg caggcccact gaaatcgacg       540
     agcggtgcaa gagacaaatt cggcgtccag cagttcaaga caacaagtct tgcatggaga       600
     taaaaggtca actgaatctt gaagtatcca aaagacgtat aaaccaaatt ttaaaccaaa       660
     acaaaatggt tacatatggt tcacgcgacc ctgtaccaag gctattaaag cgccatataa       720
     ccgctcgtct acaatttgct gagaaataca aattttggtc ggaggagttt aaaaaagtta       780
     tattttcgga cgaaaaaaat ttaacttaga cggccctgac tcctgtcaaa agtactggcg       840
     cgacaaaagg caaccacggc aggtctgcca taaacgaaac cacggtggag gatcattaat       900
     ggtttgggcc ggatttgggt atgctgggaa gtctccactt tgttttatac cgactagaac       960
     aaatgcagaa atttatatag agttactaga aacagtgctc attgaatttg ctggagacat      1020
     ttatggggat gagtggatat tccagcaaga caacgcgcca atccacacag ctcgcaaaac      1080
     aaaagacttt ctggcagcta gaaaaatacc gctattgcaa tggccagcga tcagcccgga      1140
     cctaaaccca atagaagatc tttggggaat tctttctaat aaagtttaca agaatggtcg      1200
     ccagttcgac acagttaatg accttaaaaa ggctttgatc aaggaatggg atcaaattaa      1260
     tccgacaact ctgaaaaact tagcaaattc aatgcccaat cggattaatc aaatttttat      1320
     taagaaagga agtcatataa attattagga agtgtactta aaattgttga aaaattttcc      1380
     aacatgtatt tcgaattttc ggccagtatg cacatttact tatttcatat gaaattaaaa      1440
     ttctttattt aatttaaagt taatcaaaac gtttacgaaa actatattgt tatttttttg      1500
     ttaatatgta ttccagcaat ataaataaat ttaatcaaaa acctaatata attattttat      1560
     ggtttttttt taaataattt caatgcacat atacttcttt ccctgagg                   1608
//
ID   Mariner-25_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-25_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 865-865 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-25_HSal_1p"
FT                 /translation="MSNFVPKKEYLRGILLHYFFQKKSAAEAHRILVETYG
FT                 DHALSETTCRDWFRRFKNNDFDVEDKERSGAPKKFEDEELEALLDEDPCQT
FT                 QNELAESLGVDHTTVAKRLKALGMIQKQGNWVPYELKPRDVERRFFTCEQL
FT                 LQRQKRKGFLHRIVTGDEKWIHYDNPKRRKSWGKPGHASTSTAKPNIHGSK
FT                 LMLCIWWDQLGVVYYELLKPNETITGDRYRLQLMRLSRALKEKRPQYEERH
FT                 DKVILQHDNARPHVAKPVKTYLETLKWEVLPHPPYSPDIAPSDYHLFRSMT
FT                 HGLAEQHFHSYEDAKKWVDSWITSKDESFFRHGIRMLPERWEKVVASDGQY
FT                 FQ"
XX
SQ   Sequence 1287 BP; 400 A; 271 C; 291 G; 325 T; 0 other;
     ttggggactt gaataagttc tcgctgtttc ccgacagatg gtgttatctt agcctttttg        60
     catcgggcaa tactacagcc aacttcatcg tgaagctcca ccattaggct cgaagtgaca       120
     gtatatgtta ttccgccgaa gcgtaaacaa catatttttt catagcgtta aacatgtcga       180
     atttcgtgcc aaaaaaagag tatttgcggg gaattttact gcattacttt tttcaaaaaa       240
     aatctgcagc tgaagcacat agaattcttg tggagactta cggcgaccat gctctgtcgg       300
     aaacaacatg cagagattgg tttagacgct ttaaaaataa tgattttgat gttgaagata       360
     aagaacgctc tggcgcaccg aaaaagtttg aagacgaaga attggaagca ttactcgatg       420
     aagacccatg tcagacgcaa aatgaacttg cagaatcatt aggagttgat cacacaacag       480
     ttgccaaacg tttaaaagca ttaggaatga ttcaaaagca aggaaattgg gtgccgtacg       540
     aattgaagcc gagagacgtc gaacggcgtt ttttcacgtg tgaacagctg ctccaacggc       600
     agaaaaggaa aggttttttg catcgtatcg tgactggcga tgaaaagtgg atacactacg       660
     ataacccgaa gcgtagaaaa tcgtggggta agcccggcca tgcatcaaca tcgacggcaa       720
     agccgaatat ccatggttcc aagctcatgc tctgtatttg gtgggatcag ctgggtgtag       780
     tatattatga gctcctcaaa cccaacgaaa ccatcacggg agatcgctat cgactacaat       840
     tgatgcgttt gagccgagca ttgaaggaaa aacggccgca atacgaggag agacacgaca       900
     aagtaatttt gcagcatgac aacgctcggc cacatgttgc aaaaccggtc aaaacctact       960
     tggaaacgct caaatgggaa gtcctacccc acccgccgta ttcaccggac attgctcctt      1020
     ccgattacca cttgttccga tcgatgactc atggcctggc tgagcagcac ttccattctt      1080
     atgaagatgc caaaaaatgg gtcgattcgt ggataacctc aaaagatgag tcgttctttc      1140
     gacatggtat tcgtatgctg ccagaaagat gggagaaagt agtggctagc gatggacaat      1200
     actttcaatg acatgttctt tactaatttt tttaaataaa gcattcattt tcacgaaaaa      1260
     acagcgagaa cttattcaag tccccaa                                          1287
//
ID   Mariner-25_LMi repbase;    DNA;    INV; 1332 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1332
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3267-3267 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..1227
FT                 /product="Mariner-25_LMi_1p"
FT                 /translation="MELPLVSPARCELRSVIRFLCAKNTAPMDIHAQLCEV
FT                 YGDKCMSVQHVRKWCKEFKEGRTDVHDEQRSGRPSVSDETIAKVEETMLKD
FT                 RRITVRELCELIPDVSKSTINNILTENLGYSKVCARWVPRMLTEDHKRQRV
FT                 QAAREFLQAYESHGEEFLDSIVTGDETWVHYSTPETKEQSRQWKHPSSPKP
FT                 RKFKQQLSAGKVMASVFWDRKGLLLCEFMPTGTTINADRYCETLRNLRRAI
FT                 QNKRRGMLTKGVSFHQDNARPHVARVTTELIDNFQWDIVTHPPYSPDLAPS
FT                 DYHLFPELKKHLGGTHYATGEEVKEEVLRYLRSAAGEFYDAGIKKMVHRMQ
FT                 KCINLNGDYVEK"
XX
SQ   Sequence 1332 BP; 385 A; 291 C; 335 G; 321 T; 0 other;
     cgagggttgt ccataaagta aggttcccaa tgcgctacag tcgcgaggaa tgcggttaag        60
     tgcgatctgg caacactgtc atgcagctcg gttccccctc tctccactgc cacaagttgg       120
     agctgtctgc gacgttcagt gtaggcttgg cagccattag cgatggagct tccgcttgtt       180
     tctcccgcca ggtgcgagtt acgatcagta attcgttttt tgtgcgcaaa aaacactgcg       240
     ccgatggata ttcatgcaca actgtgtgaa gtttatggtg acaagtgcat gagtgtacaa       300
     cacgttcgta agtggtgcaa agaatttaaa gaaggacgta cagatgtcca tgacgaacag       360
     cgttctggta ggccatcggt ttcggacgaa acgatcgcaa aagtggaaga gacaatgctg       420
     aaggatcgac gaataacagt tcgggaactt tgtgagctta tccctgatgt aagcaagtcc       480
     accataaaca acattttgac agaaaattta ggttattcca aggtttgtgc aaggtgggtc       540
     ccgagaatgc ttacggaaga ccacaaacgg caacgcgttc aagcggcccg cgaatttctc       600
     caggcctacg aaagccatgg agaggaattc ttggactcca ttgtcactgg ggatgagacc       660
     tgggtccact attcgacacc ggaaacgaag gaacaatccc gtcagtggaa acatccatcg       720
     tcaccgaagc cgcgtaagtt taagcaacaa ctgtctgccg gcaaagtgat ggcgagcgtg       780
     ttttgggaca ggaaggggtt attgttgtgc gaatttatgc ctactgggac aacaataaat       840
     gctgatcgtt attgtgaaac attaaggaac cttcgccgag cgattcagaa caagaggagg       900
     ggcatgctga cgaagggagt gagttttcat caagacaacg ctcgtccgca tgtcgcccgt       960
     gtgacaactg aactgatcga caactttcaa tgggatattg tcacacatcc gccctacagt      1020
     ccagatttag ccccaagtga ctatcatctc ttccccgaat tgaagaaaca cctgggcggg      1080
     acgcattacg caaccggaga ggaagtgaaa gaagaagttc tacgctacct tcgcagcgcg      1140
     gcgggagaat tctacgacgc aggcatcaag aagatggtac accgaatgca aaaatgcatt      1200
     aatcttaacg gcgattatgt cgaaaaatag gaaatattct aagctttttt tcaatatata      1260
     atgttattta aataaatttg tttttcattt tgaaaaaaaa aattgggaac cttactttat      1320
     ggacaaccct cg                                                          1332
//
ID   Mariner-25_SIn repbase;    DNA;    INV; 1324 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.02, Created)
DT   10-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-25_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1324
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 341-341 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(194..685,689..1264)
FT                 /product="Mariner-25_SIn_1p"
FT                 /translation="MCDEKHEQRINVKFLVKLKKTPTECYKLLKEAYGENS
FT                 LSRARVFEWYKRFSEGRESTKDDQRPGRPVSVSTPQIVTKINEIVRGDRRM
FT                 SIRMIAETVNADKETVRKILHDELNMKKICAKLVPKNLTPDQKLVRQQICS
FT                 DFLERLDEEPELIENIITCDETWIFYDAETKRQSMHWKTPASPRMKKARMS
FT                 KSKFKAMLIVFFDINGIVMTEWVPEGQTVNQTYYLKVLATLRERVRKKRPE
FT                 LWKNKSWILHQDNAPAHNALSVKRYLASRGTPVLEHAPYSPDLAPCDFFLF
FT                 PKIKSALKGTRFESMEEVKRKSAELLNALTKKDFQHCFDQWKKRMERCVAR
FT                 GGEYIEGEHSIVE"
XX
SQ   Sequence 1324 BP; 415 A; 264 C; 312 G; 333 T; 0 other;
     cgaggtctgg ctattaaata acgagactgc gcgcgccgaa ggcgtcctag aggggtaggg        60
     tggaaaacaa atgcagcgtt ggatagctgg aagtgtctgc tattccagta caaaaacacg       120
     tttttgtcgc tgcagtagta tttttttcta tagagtttag aaacgaacgt gtttttttct       180
     cgtgccgata acaatgtgtg acgaaaaaca cgagcaacgg atcaatgtga aatttctcgt       240
     taaattaaaa aaaactccga ctgagtgcta taagttgttg aaagaagcct atggtgagaa       300
     ttctctatct cgtgcgcgtg ttttcgaatg gtataaacgg ttttctgaag gccgagagag       360
     caccaaagat gaccaacgtc caggtcgacc tgtctctgtt tcaactccgc aaatagtgac       420
     caaaatcaat gaaattgtgc gcggagatcg tcgtatgagc attcggatga ttgctgagac       480
     tgtaaacgcc gataaagaaa ctgtcagaaa aattttacat gacgaattga acatgaagaa       540
     aatctgtgcg aagttggtcc caaaaaattt gacccctgac caaaaactcg tccgtcaaca       600
     gatctgctca gattttcttg agaggttaga tgaagagcct gaattgatag aaaacatcat       660
     cacttgcgac gaaacctgga tattctaata cgatgctgaa actaagcggc aatccatgca       720
     ctggaaaact cctgcatcgc caagaatgaa aaaagcaagg atgtcgaaat caaaatttaa       780
     agccatgcta atcgtttttt tcgacatcaa cggcatcgtg atgactgaat gggttccaga       840
     gggtcaaact gtaaaccaaa cttactattt gaaagttttg gcaacactgc gagagagagt       900
     tcgtaagaaa cggccggagt tgtggaaaaa caaatcgtgg atcttgcacc aggacaacgc       960
     acctgcccat aacgcgctgt ctgtgaagcg ttatttagcc tctagaggca ctccagtgct      1020
     cgaacacgcg ccgtactcgc ctgatttagc accctgtgac tttttcctgt ttccgaagat      1080
     caagtctgcc ttaaaaggaa cccggttcga gtcgatggaa gaagtgaagc gaaaatcggc      1140
     ggagctccta aatgctctta caaaaaaaga cttccagcat tgctttgacc aatggaaaaa      1200
     acgaatggaa cggtgtgtgg cgaggggagg ggagtacatt gaaggggagc attcgattgt      1260
     agaataattt ttaaaataaa actctttttc ataagcagtc tcgttattta atagccagac      1320
     ctcg                                                                   1324
//
ID   Mariner-26N1_AEc repbase;    DNA;    INV; 922 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-26_AEc; Mariner-26N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-922
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 571-571 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 922 BP; 275 A; 192 C; 221 G; 234 T; 0 other;
     ctactgtggg caaaaagtat cgataatttc aaatttaaat ttcccggggt ttccgatagg        60
     gacaaccgaa tttattttga agttggcaat tctgtcagtg acagctgcgc caaggtacac       120
     gtcaaaatag tcattagtgt ttgagataag cgtctgtttg taagcacgta aaaagtgatt       180
     tgtcgttttt tgaaatgtct gaaattatgg aacaacgaag tgcgataaaa ttttgtgtcc       240
     ggaatggaat ttctgcagcc gaaacgttga gaatgtgtca gaaggcgtac ggtgatggcg       300
     ctttgtcaca agcaagagtt tttgcatggc acagaatgtt taaagagggc cgagagagcg       360
     ttcaagacga gccacgtgcc ggacggccat ccacatcaac cgtgatgtga ttcacgtcca       420
     aaaaatccga gatttggtgc tcgaaaatcg tcaacagcca atactatttg ggtgttatgc       480
     gtcgtttgcg tgatgccgtg cgccgaaaaa gaccagaatt gtgggccgac aactcttggc       540
     tccttcacca cgataatgcg ccgtcgcaca catcactcgt agttcgtgac catttcgcca       600
     aaaactcaac tcatatcatt ccacaaccac cgtattcgcc tgacttagca ccatctgact       660
     tctggctgtt ctcaaaactc aaaaggccac tccgtggaca ccgtttcgag acgattgaag       720
     agataaaaga aaaaacgacg agtgagctgc gggccatacc tacagacgac tatgcggcat       780
     gtttcgaaaa ttggaaaaag cgttggcaca gttgcattgc aaccgggggg gactactttg       840
     agggggatga tacgaatgtg gatgaataaa taaagaattt ttgaaaaaca aacaaattat       900
     cgatactttt tgcccacagt ag                                                922
//
ID   Mariner-26_AEc repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-26_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 572-572 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           195..1256
FT                 /product="Mariner-26_AEc_1p"
FT                 /translation="MSEIMEQRSAIKFCVRNGISAAETLRMCQKAYGDGAL
FT                 SQARVFAWHRMFKEGRESVQDEPRAGRPSTSTDVIHVQKIRDLVLENRRLT
FT                 VRDLTDLVGISEGSVKTILSDHLGLRKVKARLVPKSLNFLEKQRRVDVSET
FT                 MLSDYQNRMKNIITGDESWIYAYDPETADQSAEYRVKGEPKPKKSRQNKSK
FT                 IKVMLTVFFDYRGVVHFEYLPTGQTVNSQYYLGVMRRLRDAVRRKRPELWA
FT                 DNSWLLHHDNAPSHTSLVVRDHFAKNSTHIIPQPPYSPDLAPSDFWLFSKL
FT                 KRPLRGHRFETIEEIKEKTTSELRAIPTDDYAACFENWKKRWHSCIATGGD
FT                 YFEGDDTNVDE"
XX
SQ   Sequence 1312 BP; 397 A; 278 C; 309 G; 328 T; 0 other;
     ctactgtggg caaaaagtat cgataatttc aaatttaaat ttcccggggt ttccgatagg        60
     gacaaccgaa tttattttga agttggcaat tctgtcagtg acagctgcgc caaggtacac       120
     gtcaaaatag tcattagtgt ttgagataag cgtctgtttg taagcacgta aaaagtgatt       180
     tgtcgttttt tgaaatgtct gaaattatgg aacaacgaag tgcgataaaa ttttgtgtcc       240
     ggaatggaat ttctgcagcc gaaacgttga gaatgtgtca gaaggcgtac ggtgatggcg       300
     ctttgtcaca agcaagagtt tttgcatggc acagaatgtt taaagagggc cgagagagcg       360
     ttcaagacga gccacgtgcc ggacggccat ccacatcaac tgatgtgatt cacgtccaaa       420
     aaatccgaga tttggtgctc gaaaatcgtc gattgactgt ccgagacctt actgatcttg       480
     ttggcatatc ggaaggatca gtcaaaacca ttttgagcga ccatttgggc ctccgaaaag       540
     tgaaagcgcg attggtgcca aaatcgctca attttttgga aaaacaacga cgcgttgatg       600
     tgtctgaaac gatgctttcc gactatcaaa accgaatgaa aaacatcata actggagatg       660
     agagttggat ttacgcatac gatccggaaa ctgccgacca atcagccgaa taccgtgtca       720
     aaggtgagcc gaaaccaaaa aaatcgcgcc aaaacaagtc gaaaatcaag gtgatgctga       780
     cagttttctt cgactatcgt ggtgtggttc actttgaata tcttccgacc ggccaaactg       840
     tcaacagcca atactatttg ggtgttatgc gtcgtttgcg tgatgccgtg cgccgaaaaa       900
     gaccagaatt gtgggccgac aactcttggc tccttcacca cgataatgcg ccgtcgcaca       960
     catcactcgt agttcgtgac catttcgcca aaaactcaac tcatatcatt ccacaaccac      1020
     cgtattcgcc tgacttagca ccatctgact tctggctgtt ctcaaaactc aaaaggccac      1080
     tccgtggaca ccgtttcgag acgattgaag agataaaaga aaaaacgacg agtgagctgc      1140
     gggccatacc tacagacgac tatgcggcat gtttcgaaaa ttggaaaaag cgttggcaca      1200
     gttgcattgc aaccgggggg gactactttg agggggatga tacgaatgtg gatgaataaa      1260
     taaagaattt ttgaaaaaca aacaaattat cgatactttt tgcccacagt ag              1312
//
ID   Mariner-26_DF repbase;    DNA;    INV; 1659 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-26_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1659
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 793-793 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. ~760-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1659 BP; 521 A; 302 C; 307 G; 526 T; 3 other;
     cagtggctcg cagcttattt caaccagcac ctcaaaaaaa ctttaaagcc atatatctag        60
     caaaccatga gagctaatat aaaaatttaa atggggattt gtagtgtgag cctttaactt       120
     aacatttctg ttaacacttt ttttttagca ttttttaaat atttaataaa aatttttaaa       180
     cagaaatact gcttaaaata ctgcagcagc ttatttcaac cagctaggaa aatatatttt       240
     ttaactgact taaatgaaaa aacaagaaaa attawcactt gttttggcca ccattgttgt       300
     caatgaacat tttaagccgt tttgacatcg attccaccag cttttttctc cccaatagga       360
     ctatttttcc tcactctgtc accatagcgt tttttagagc agatttgtta gaaaactggc       420
     tttttttgat attttggtas ggaattgccc agaaattktt cattacgttt atgtctggtg       480
     cctaggcggg gggttccatc acatgtaggc aattccaaat cagccaagac tgacaatatc       540
     cgatttgtgg tttgggtcat tgtcttggta gaatcgaaaa tcctcccgat ttccaagttc       600
     tacgcatttt ggagaaaatt ggctttcaaa atttcaagat agtgaacctt gtccatcgta       660
     gactttataa agtgcactct tccgacgcca gctgccgaca tacaggccca taccatgaca       720
     ctaccgcagc catgcttaac tgtagtattt agattcttgc tttggagctc tgtatttgac       780
     ttacgctaaa catgtctggc tccatcagac ccggaaatat aagtttggac tcgtcttcaa       840
     aattagggtg ttccaaaaag ctaaattctt gcacaagtgg tcgttggcaa atttaggcga       900
     agaatctaaa tactacagtt aagcatggct gcggtagtgt cacggtatgg gcctgtatgt       960
     cggcagctgg cgtcggaaga ctgcacttta taaagtctac gatggacaag gttcactatc      1020
     ttgaaatttt gaaagccaat tttcttcaaa atgcggtaga acttggaaat cgggaggatt      1080
     ttcgattcta ccaagacaat gacccaaacc acaaatcgga tattgtacag tcttggctga      1140
     tttggaattg cctacatgtg atggaacccc ccgcctaggc accagacata aacgtaatga      1200
     aaaatttctg ggcaattccg taccaaaata tcagaaaaag ccagttttct aacaaatctg      1260
     ctctaaaaaa cgctatggtg acagagtgag gaaaaatagt cctattgggg agaaaaaagc      1320
     tggtggaatc gatgtcaaaa cggcttaaaa tgttcattga caacaatggt ggccaaaaca      1380
     agtattaatt tttcttgttt tttcatttaa gtcagttaaa aaatatattt tcctagctgg      1440
     ttgaaataag ctgctgcagt attttaagca gtatttttgt ttaaaaattt ttattaaata      1500
     tttaaaaaat gctaaaaaaa aaatgttaac agaaatgtta agttaaaggc tcacactaca      1560
     aatccccatt tgaattttta tattagctct catggtttgc tagatatatg gctttaaagt      1620
     ttttttgagg tgctggttga aataagctgc gagccactg                             1659
//
ID   Mariner-26_HSal repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-26_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 866-866 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-26_HSal_1p"
FT                 /translation="MEKSEFRVLIKHCFLMGKNTVEAKAWLDKCYGTSAPP
FT                 NSTIKYWFAEFRRNRTSTNDAPRSGRPNEAVTPENIQKISEIVLNDRKMKL
FT                 SELANIIGISKERVGHIIHEYLHMKKLCARWVPRFLTIEQKAERVRLSKQN
FT                 LALFNRNKKEFLRRFVTMDETWIHHYTPESNRQSAEWLLPGESRPKRPKTQ
FT                 QSAGKVLASIFWDAHNIIFIDYLEHGKTINKEYYCTLLDRLDDEVKVKRPH
FT                 LAKKKILFHQDNAPAHSARDTTDKLKKLRYELVPHPPYSPDLAPSDYFLFP
FT                 RLKQWLAGKRFYSNEEVKLETNAYFEGLDTEHYKTGIEMLADRYTKCITLN
FT                 GDYVEE"
XX
SQ   Sequence 1294 BP; 403 A; 269 C; 271 G; 351 T; 0 other;
     ctacatgggc tgaaaagtct ttggcctgac atatagatgg cgccacaaac taaaaatcct        60
     tatatttcct atagagtacc aaccttaact tagatgctgt aaaaatttca tgatatttcg       120
     ttgactcgtg tacaagttat agctttcgaa gtgacgttac ctctgaattt atctttacta       180
     tggaaaaaag tgaatttcgt gttttgatta aacattgctt cctgatggga aaaaacactg       240
     ttgaagcaaa ggcatggctt gataaatgtt acggcacatc tgccccaccg aattcaacca       300
     tcaaatattg gtttgctgag tttcgtcgta accgtacgag cacaaatgat gcaccacgtt       360
     caggaaggcc aaatgaggca gttactccag aaaacatcca gaaaatcagt gaaatcgtgt       420
     tgaatgaccg caaaatgaaa ttgagtgagc tagctaacat cataggcatc tcaaaggaac       480
     gcgttggtca tatcattcat gaatatttac acatgaaaaa gctttgcgcg cgttgggtgc       540
     cgcgtttttt gacaattgag caaaaagcgg aacgtgttcg actttcaaag caaaatctgg       600
     ccctgtttaa ccgcaataag aaggagtttt tgcgtcgatt tgtcacaatg gatgaaacat       660
     ggatccatca ctacacaccg gagtccaatc ggcagtcagc ggagtggtta ttgcctggtg       720
     aaagccgtcc gaagcgcccg aagacacaac aatcagccgg caaggttttg gccagtattt       780
     tttgggatgc gcataacata atattcattg attatcttga acatggtaaa actatcaata       840
     aagaatatta ctgtacatta ctggatcgat tggacgacga ggtcaaggtc aaacggccac       900
     atttggcaaa gaaaaaaatt ttgtttcacc aagacaatgc tccagctcac tcggctcgcg       960
     atacgaccga taaattaaag aaattgcgct atgaattggt cccgcatccc ccgtattctc      1020
     cagacctggc ccccagcgac tatttccttt ttccccgact gaagcagtgg ctcgctggta      1080
     aaagatttta ctcgaatgag gaggtcaagt tggaaacaaa tgcctatttt gagggacttg      1140
     acaccgagca ctataagacc ggcatcgaaa tgttagcgga ccgttacact aagtgcatta      1200
     ctctaaatgg agattatgtc gaggaataaa acactttttt cattaaaaaa atcgtttttt      1260
     cattgttaag ccaaagactt ttcagcccat gtag                                  1294
//
ID   Mariner-26_LMi repbase;    DNA;    INV; 1820 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1820
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3268-3268 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(208..684,635..1504)
FT                 /product="Mariner-26_LMi_1p"
FT                 /translation="MDVLILITFLRTRYSIPPHSPCARPAADLVLSASAVT
FT                 LLTAVRHVSIHSCGNDGHGACIRQSGLQWESCCTIVCRTFSKQTYPTSFHV
FT                 RGHRKTPTRRRKVSRRYFLPEVRPLYSKVGTPCAWYLQILSPVYCLYSDRC
FT                 RKVMRVVRARLEHFCWRRTCCGSSALDSNTSVGGERAENVRRGPSHQHPAL
FT                 HTDKSAVWRVVHDYQLHPYHLQKVQALREEDYPRRVQFAQWYLQQCILQPQ
FT                 FPSLVLFTDECTFTRDGMVNVHNMHVWADENPHAQVVHNHQQRFGINIWAG
FT                 IIGDHIVGPYLLPNRLTGPIYLTFLRDVLPTLLDAVPLNVRMEMWLQHDGA
FT                 PAHFDVAVRNHLNVAYPNRWIGRGGPVPWPARSPDLTPLDYFLWGSIKSMV
FT                 YGTPVTSAEDLIARLHGAIETVQRQPHVFAHVRASQHRRCTLCNNVGGTQF
FT                 EALL"
XX
SQ   Sequence 1820 BP; 448 A; 459 C; 467 G; 446 T; 0 other;
     cagggtgcct caaaaaaaca ccgacaacgc ttagtatgtt gtgcgggacg gcaaagtgat        60
     cggttttcaa gaaggaaccc atatccggaa acgctcggct tgggcgctgg agagcattca       120
     agtctgagaa cgaactgttg tgatccgatc cgttttggtg cctgcatact gaaggtatgc       180
     aacccttcag acatctgtgt attgcggatg gacgtcctga tcctaataac attcctgcgc       240
     acgcgctaca gtattcctcc acacagccct tgtgcccgtc ctgctgcgga ccttgtgttg       300
     tcggccagtg cagtaacgtt gttgacagcg gtgcgacatg tatcaattca cagctgcgga       360
     aatgacggac atggtgcttg catacggcaa agcggattgc aatgggagag ctgctgcacg       420
     attgtatgca gaacgttttc caaacagaca tatcccacat cattccacgt tcgcggccat       480
     cgaaagacgc ctacgagaag acggaaagtt tcacgtaggt attttctgcc tgaggttcgt       540
     ccattgtaca gtaaagtagg aacaccttgt gcttggtacc tgcaaatact atcccctgtc       600
     tactgtttgt actctgatag gtgccgaaaa gtgatgcggg tcgtccgcgc tcgactcgaa       660
     cacttctgtt ggaggagaac gtgctgagaa tgttcgaaga ggacccagcc accagcaccc       720
     ggcgctgcac acggataaaa gtgccgtgtg gcgtgttgtc catgattacc agctccatcc       780
     ttaccatctg cagaaagtcc aggcattacg ggaggaggat tacccacgac gggtacagtt       840
     tgcgcaatgg tatttacaac aatgcatact ccagccacaa ttcccgagct tggtgctatt       900
     cacggatgaa tgcacgttta ctagagacgg aatggtaaac gtgcacaaca tgcatgtttg       960
     ggcggacgaa aatccgcatg cccaggtggt tcacaatcac caacagaggt tcggtattaa      1020
     catctgggcc gggataattg gtgaccatat cgttgggcca tacctactgc caaacagact      1080
     gacaggaccg atctacctca catttcttcg agatgttttg cctaccctgt tggacgcagt      1140
     gccactaaat gttaggatgg aaatgtggct gcaacacgac ggagctccag cacactttga      1200
     tgtcgctgtg cggaaccacc tcaacgtcgc atatcccaat cgatggattg gtagaggtgg      1260
     accagttccg tggccagcac ggtcgccaga tttgacacct cttgactatt ttctgtgggg      1320
     tagcattaag agtatggtgt atggcactcc tgtaacgtct gcggaggacc ttattgctcg      1380
     actccatgga gcgattgaaa cagttcaaag acaaccgcac gtatttgctc atgtgcgtgc      1440
     gtctcagcac cgtcgatgta cgctctgcaa taacgtagga ggtacgcagt tcgaagccct      1500
     tttgtaatgt agacagcgcg atgtgctact catgttgggt ttattgacgt aatgaggaac      1560
     gcacacccat ctcagacttc gtgcgcagga atgttattag gatcaggacg tccatccgca      1620
     atacacagat gtctgaaggg ttgcatacct tcagtatgca ggcaccaaaa cggatcggat      1680
     cacaacagtt cgttctcaga cttgaatgct ctccagcgcc caagccgagc gtttccggat      1740
     atgggttcct tcttgaaaac cgatcagttt gccttcccgc acaacatact aagcgttgtc      1800
     gctgtttttg aggcaccctg                                                  1820
//
ID   Mariner-26_RPr repbase;    DNA;    INV; 1257 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-26_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1257
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3273-3273 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(138..620,624..869,869..1183)
FT                 /product="Mariner-26_RPr_1p"
FT                 /translation="MSLCEAQYLFGILSIKMTLRYEIQVILRHYWKRKFTA
FT                 AETTRLIREVEEESNLNERTVRRWFAKFESGDTSLERQTGSGRPSVVDSEA
FT                 LRHAIEDDPTKSTRQLSSELGLSQSSVNRHLQKLGKVKRACREVPHELTLQ
FT                 QAERRLGNMPFAPSKSKWRTFHKWIYWRNPNSSGQWIDRGQPALPVARRCQ
FT                 FEKKTMLSVFWNFEGVIHYEFVPEGRSVDSELYSEQLXRMHEVLGEAIPGF
FT                 GEIGRMFCCSRTTPGRTLPDKNLLKWMPSNFYRTHPIALILAPSDFYLFRA
FT                 MAHFLKGKTFKTLEEVKTGVEDFFQSKPKEWYRQGIEQLASRWQLTIEHNG
FT                 LYFES"
XX
SQ   Sequence 1257 BP; 367 A; 255 C; 291 G; 343 T; 1 other;
     ttggggtgag taaaaaaaag accgttttta attagtcgat gtttattgac ctttctttct        60
     cactctgtta attccaatgt tgttgttatt ggtatctttt taatcctaat actatattga       120
     atcattttgt aaacataatg tctctctgtg aggctcagta cttgtttggc attctttcaa       180
     tcaaaatgac gttgaggtat gaaattcaag taattttgcg acattactgg aaaagaaaat       240
     ttacagccgc cgaaaccacg cgtttgatac gggaagttga agaggaatct aaccttaatg       300
     agcggactgt gagaaggtgg ttcgccaaat ttgaaagtgg cgatacaagc ttggaaaggc       360
     agacaggctc agggcgaccg tctgttgtgg acagcgaggc tctacgacac gctattgaag       420
     atgatcccac aaaaagtact cggcagctat cctccgaact tggtttgtca cagtcaagtg       480
     tgaatcgcca cttacagaaa ttaggtaaag tgaagagagc atgtagagaa gttccacatg       540
     agctcacctt gcagcaagcc gaacgtcgcc tgggaaacat gccgtttgct ccttcaaaat       600
     ccaagtggcg aacgtttcat taaaagtgga tttactggcg caatcctaac tcatcaggac       660
     agtggataga ccgaggccag cccgctctac cggtcgcaag gcgatgtcaa tttgaaaaga       720
     agacaatgct gtcggttttt tggaattttg aaggtgtaat ccactatgag tttgttccgg       780
     aaggacgttc tgtcgattct gagctttatt cggaacagct gcawcgaatg cacgaagttt       840
     tgggagaggc gatacccggc tttggtgaat aggaagaatg ttttgctgca gcaggacaac       900
     gcccggccgc acacttcccg acaaaaactt gctgaaatgg atgccatcga acttctaccg       960
     cacccaccct atagccctga tcttggcgcc ttcggacttt tatcttttcc gagcaatggc      1020
     tcactttctt aaggggaaaa catttaagac attggaggag gtaaaaactg gagtagaaga      1080
     ctttttccag tcgaaaccca aagagtggta ccggcaggga atcgaacagc tggcttctag      1140
     atggcaacta accatagaac ataatggact gtacttcgaa agttagaaga aatttgatgt      1200
     aagaaaaaat aataattcat tttaaccctt gaaacggttt ttttttactc accccaa         1257
//
ID   Mariner-26_SIn repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.02, Created)
DT   16-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-26_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1266
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 342-342 (2014).
XX
DR   [2] (Consensus)
XX
CC   >83% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(163..669,614..1138)
FT                 /product="Mariner-26_SIn_1p"
FT                 /translation="MAFDKHHIRHCSFCISIKEKNAAEAAEIICSALGEDA
FT                 VTHKTCKKWYQRFRSGDFDLCDRERPGQPKKFEDEELEQLLSENSAQTQEE
FT                 LALQLGVTQKAISYRLNKLGKIQKLGRWVPHELSPDNKKRRCETAMSLLTR
FT                 FKQKDFLYKIITGDKKWVLYDNPKRKKIVGRAIKNGCCTTILNEKKSWVDP
FT                 GQPSTSTAKSNIHAKKVLLCIWNMKGVVYYELLEPGQTINSEYQQQLIRLS
FT                 DELERKRSFTGHGTRQVILQHDNARPHVAKGTKDVIYSLGWEVLPHAAYSP
FT                 DLAPSDYHLFRSLQHHFTDMYFKTLEEMRKSIDDFIASKPPSFFSRGDSSV
FT                 A"
XX
SQ   Sequence 1266 BP; 429 A; 237 C; 254 G; 346 T; 0 other;
     ttagatgtag aaattaattc atgcctttac attgaatcaa ttgcaaatcc attttaaatt        60
     taaacatttt cctgccattt tgagattttg aagtatctac tttaacattt ataaaacact       120
     gtataacttg gcaaaacaga tgacataatc tcacaaaaca cgatggcctt cgacaagcat       180
     catattagac attgttcttt ttgcatttca attaaagaaa aaaatgctgc tgaagccgcg       240
     gaaataattt gttctgcttt gggcgaagat gcagtgacgc ataagacatg caagaaatgg       300
     tatcagagat ttcggagtgg tgatttcgat ctttgtgatc gagaacgtcc cggccaacca       360
     aaaaaatttg aagacgaaga acttgagcag ttgctaagtg aaaattccgc tcaaactcaa       420
     gaggaactcg ctttacaact tggagtgacc cagaaagcga tttcctatcg tttgaataaa       480
     ctaggaaaga tccaaaagct aggccgatgg gttccacatg agctcagtcc ggacaacaaa       540
     aaacgacgat gtgagacggc tatgtccttg ctgacgagat tcaaacagaa ggattttttg       600
     tacaaaatca taacgggcga taaaaaatgg gtgttgtacg acaatcctaa acgaaaaaaa       660
     atcgtgggtt gatcctggtc aaccatcgac atcaactgcg aaatcgaata ttcatgccaa       720
     aaaggtctta ctgtgtattt ggaatatgaa gggagtagta tactacgagt tgctagaacc       780
     tggtcagact atcaattcag agtatcagca gcaactcatc cgtttgagtg acgaacttga       840
     aagaaaaaga tcatttactg gacacggaac gaggcaagtc attttgcagc acgacaacgc       900
     tcggccacat gtcgcaaaag ggacgaagga cgtcatttat tcattgggct gggaagttct       960
     ccctcatgcg gcttattcac cggatctagc tccatcggat tatcacctgt tccgatcgct      1020
     ccaacatcat ttcactgata tgtattttaa aacattagaa gagatgcgaa aaagcatcga      1080
     tgacttcatt gcatcaaaac cgccatcttt tttttcaaga ggggattcgt cagttgcttg      1140
     aaagatggaa caaagtcatc gaaagtaatg gcgaatattt cgaggattga aagatatatg      1200
     attttcctat aaataaacgg ttaaatttat ttaaaaaaga attaccgaat taatttctac      1260
     acctaa                                                                 1266
//
ID   Mariner-27N1_LMi repbase;    DNA;    INV; 575 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-27N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-575
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3269-3269 (2014).
XX
DR   [1] (Consensus)
XX
CC   >82% identical to consensus.
XX
SQ   Sequence 575 BP; 177 A; 118 C; 118 G; 162 T; 0 other;
     cagggtgttc ggaaattccc gttacaaact tcgaggactt gtagagggga gtgagtacat        60
     attttgataa ggaactcacg tccggaaatg tcatccagtg acgctatgag cacttcttta       120
     tctttgacac tgtgaaacaa atctcttcta ctgcaagctc tttgctttcc atattttggg       180
     aggaggtagt atggaccaaa acaagaaaaa agtctactaa acatggactc tacaatgcat       240
     accttaagag ctatgagcac ttgaccagta gaagagacgt gttaacagta cacaaccgaa       300
     gatgaagacg ttgctcaaag ctcaaggtat gcattttaga gcccatgttt actagacatt       360
     ttgttcttgt tttggtccat actacctcct tccaaaatat ggaaagcaaa gagcttgcag       420
     tagaagagat ttgtttcaca gtgtcaaaaa gtaaagaagt gctcatagcg tcactggatg       480
     acatttccgg acatgggttc cttatcaaaa tattatgtac tcactccctc tctacaagtc       540
     ctcgaagttt gtaacgagaa tttccgaaca ccctg                                  575
//
ID   Mariner-27_AEc repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-27_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 573-573 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1209
FT                 /product="Mariner-27_AEc_1p"
FT                 /translation="MSENKVHFRHILLYYFKKGKRAAEAHRKICGVYGDDA
FT                 LTERAAQKWFAKFRSGDTSLEDGPRSGRPTEVDSNDIKALVEQDRTLKVRE
FT                 IAETLKIGYGTVQRHLQQLGYVSRLDVWVPHKLTEENLANRMSICNSLLKR
FT                 HESDPFLKRIVTGDEKWIIYDNIVRKRSWGTAGEPPNATPKAGLHPKKILL
FT                 SIWWDHRGVLFYELLPQGKTIDSKVYCTQLTKLNQALRQKRPELVNRKGVI
FT                 FHHDNARPHTAIITQQKLVQLGWDVLPHPPYSPDLAPSDYHLFRSLQNSLN
FT                 GKSFADQTAVKTYLDRFFASKPQTFYESGIMKLLERWQEVINKNGEYIID"
XX
SQ   Sequence 1287 BP; 353 A; 307 C; 309 G; 318 T; 0 other;
     ttgggtggat ccatatagtc gttcggtttt tgttagtagt gcaaattttt tccgaatatc        60
     tccggttctg gttgcctaat cgggcaatcc aaatatgttt tggaaaggtg acagtccgct       120
     ctttttatct gtcaaatttg gtttcattgg cattagtttt gtttgtgcta caggcctgtg       180
     aacatgtcgg agaataaggt gcattttcgg catattttac tttattactt caagaaaggc       240
     aagcgagctg cggaggccca ccgaaagata tgcggcgtat acggggacga tgccttaaca       300
     gaacgtgccg ctcagaaatg gtttgccaaa tttcgttccg gagatacgag tcttgaagat       360
     ggaccccgca gcggtcggcc caccgaggtt gattcgaatg atatcaaggc actggttgag       420
     caagaccgga cgctaaaggt gcgagagatt gcggagacac ttaaaatagg ttatggaacc       480
     gttcaaaggc atttgcaaca gcttggctac gtgtcccgcc tcgatgtttg ggtgccgcac       540
     aagctgaccg aggagaacct ggccaaccgc atgtccatct gcaattcact tctgaagcgg       600
     cacgaaagcg acccgtttct caaacgaata gtgactggcg acgaaaagtg gatcatctac       660
     gacaacatag tgcgcaagag atcatgggga accgctggcg agccgccgaa tgccaccccg       720
     aaggccggcc tgcatccgaa gaagattttg ctatccatat ggtgggatca tcgtggtgtg       780
     ctgttttacg agctgcttcc tcagggaaaa acgatcgatt cgaaggtcta ctgcacgcag       840
     ctaacgaaat tgaatcaagc attgcgacag aaacgtccag aactggtcaa tcgcaaaggt       900
     gtcatattcc accatgacaa cgccagaccc cacaccgcaa taatcactca gcaaaaatta       960
     gtgcaacttg gctgggatgt tttgccccac ccaccgtatt caccagacct tgcgccatcc      1020
     gactaccact tgttccggtc cctgcaaaac tccctcaacg ggaaatcgtt cgctgatcag      1080
     acagctgtga aaacgtacct cgaccggttt ttcgcctcta agccccagac cttctatgag      1140
     agcggaataa tgaaattgtt ggaaagatgg caagaggtca tcaacaaaaa cggagaatat      1200
     atcattgatt aaaattcatt ctttgtatga aaaaaacttg tttcatttta gccttcaaaa      1260
     accgaacgac tatatggatc cacccaa                                          1287
//
ID   Mariner-27_DF repbase;    DNA;    INV; 1636 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-27_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1636
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 794-794 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 722-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1636 BP; 504 A; 311 C; 306 G; 514 T; 1 other;
     cactgacgag caaaactgta acacgatttc attgtttcaa cttcaaaggt ctgtaacttt        60
     ttttctaatg cacggatttt gaagatctta gtcttgtttt gtaggttata ttatttacta       120
     ctattaagta aaattcaaag ccatttgata tcagttaaag aaaatgacgc gccaaactgt       180
     aaaaaaagtc aaatgttaca gttttgcact ctggttattt ttttaagaaa tatttttatt       240
     aatgattttt taatagtgag ttcacatccc cttggacttt tttagctctt ctatgcgtct       300
     gggcattttt tgggtacacc gtcgtaccat ttccggggga atatcattcc atacgccctg       360
     ttgccgctct cacaactcct tcattccact tggaggaact gcatatttct ccagctgcga       420
     tttcacatga ctccacaagt tttctgttgg attcatgtcg ggagattgtg gtcgccactt       480
     catagattga aatttctgtt ttgaaatcca attttttacc aatatggacg tgtgcttggg       540
     gtcgttgtct tgctgaaaaa cgcatttttc ggcagaaaga cccaactttc caaaattcct       600
     ttggaagatt ttcttgtaaa atggatagat attgctcctt tcgcattatt ccatcgatta       660
     tcaacaagga accaactcca tttaaattaa tgctccccca aaccatgatg gaaccgctag       720
     cggtttgtca ctcattcctt ggtgactgga tcgtgggatc tctagtccaa taccaagagc       780
     gcccatctga ctcgaagcga ttaatttttg tttcatccga ccataaaacc ttgaaaacaa       840
     aagtattttg gaattgtttg ctttttaaga cactggtagc aatgacttac agtatcccaa       900
     ttcgctatca agcacggtgg cggttccatc atggtttggg ggagcattaa tttaaatgga       960
     gttggttcct tgttgwtaat cgatggaata atgcgaaagg agcaatatct atccatttta      1020
     caagaaaatc ttccaaagga attttggaaa gttgggtctt tctgccgaaa aatgcgtttt      1080
     tcagcaagac aacgacccca agcacacgtc catattggta aaaaattgga tttcaaaaca      1140
     gaaatttcaa tctatgaagt ggcgaccaca atctcccgac atgaatccaa cagaaaactt      1200
     gtggagtcat gtgaaatcgc agctggagaa atatgcagtt cctccaagtg gaatgaagga      1260
     gttgtgagag cggcaacagg gcgtatggaa tgatattccc ccggaaatgg tacgacggta      1320
     tacccaaaat atgcccagac gcatagaaga gctaaaaaag tccaagggga tgtgaactca      1380
     ctattaaaaa atcattaata aaaatatttc ttaaaaaaat aaccagagtg caaaactgta      1440
     acatttgact ttttttacag tttggcgcgt cattttcttt aactgatatc aaatggcttt      1500
     gaattttact taatagtagt aaataatata acctacaaaa caagactaag atcttcaaaa      1560
     tccgtgcatt agaaaaaaag ttacagacct ttgaagttga aacaatgaaa tcgtgttaca      1620
     gttttgctcg tcagtg                                                      1636
//
ID   Mariner-27_HSal repbase;    DNA;    INV; 1276 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-27_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1276
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 867-867 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1197
FT                 /product="Mariner-27_HSal_1p"
FT                 /translation="MASDKAFIRHCIRYEFHQGKSAAKACASICSVLGENT
FT                 VSKSTCEFWFRRFKAGDFEVSDRERSGAPQKVEHEQLQALLDEDSAQTQKE
FT                 LAEQVGVTQQTISNRLHAMGKIHKEGKWVPHELSQRNKDERVMKCLNLLNK
FT                 QRRKSFLWKIVTGDEKWIWFDNPKRKKHWVDPGQATTSTPKRNIHSKKVLL
FT                 CIWWDIKGVLYYDLLQPGETVTADRYKQQLLRLNEEISRKRPFTGKGLRPV
FT                 KLLHDNARPHVAKSVKETLLTLGWEVLEHPAYSPDIAPSDYHLFRSMQNAL
FT                 SSVHFRTFDELQKWVDDFIVSHDEYFFTAGIRQLPDRWQKVIDNDGAYFD"
XX
SQ   Sequence 1276 BP; 382 A; 252 C; 303 G; 339 T; 0 other;
     ttaggtgtac aaataagttt taaagcgttt tttgtgtgac gtatactgct ggtttacaaa        60
     tcagaaattc tcccgcggtt ttgtcacgtg actgtaaccg gtccagagta ataaaaacga       120
     cgcagaagtt ggctcagcat tcaaacgttc ttaaacgttg gtaggtgaaa gatggcaagc       180
     gacaaagcat ttattcgtca ctgcattcgt tacgaatttc accaagggaa aagtgctgca       240
     aaagcatgtg catcgatatg ttctgttctt ggggagaata ctgtatcgaa aagcacgtgt       300
     gaattttggt tcaggcggtt taaagctggt gattttgagg ttagcgatcg agaacgtagc       360
     ggcgccccgc agaaggttga acatgagcaa ttgcaagcat tactggatga agactccgcg       420
     caaacgcaaa aagaacttgc tgaacaagtg ggagtaactc aacaaactat ttctaatcgt       480
     ctacacgcaa tgggaaagat tcacaaagaa ggaaaatggg tgccacatga actgagtcag       540
     aggaacaaag atgagcgtgt catgaagtgt ttgaatctgt taaacaaaca acgtaggaag       600
     tcttttctgt ggaaaattgt gacgggcgat gagaagtgga tatggttcga caatcccaaa       660
     cgcaaaaaac actgggtaga tcccggtcaa gcaacgacat caacaccgaa gcgcaatatt       720
     cactcgaaga aagttttgtt atgcatctgg tgggatatca agggtgtgct gtattatgat       780
     ctcttgcaac cgggtgaaac tgttactgct gatcgctaca agcaacaatt gctgcgattg       840
     aacgaggaaa tcagtcgaaa acgtccattt actggcaaag gattgcgccc cgttaaattg       900
     ctccatgata acgccagacc gcatgttgcg aaatcggtca aggaaacgtt attgacgctt       960
     ggctgggaag ttttggagca cccggcgtat agtcccgaca tagccccttc agactatcac      1020
     ttgttccgat ccatgcaaaa tgctttgtct tcagttcact tccggacatt tgacgaactg      1080
     caaaaatggg ttgacgactt catcgtgtcg cacgacgaat acttctttac tgctggaatc      1140
     cgtcagctgc ctgaccgatg gcagaaggtg atagataatg acggcgcata ttttgattaa      1200
     taaatgtatt gttcttttct ctcaaatacg ttttgcattg tcttaaaaac gctttaaaac      1260
     ttatttgtac acctaa                                                      1276
//
ID   Mariner-27_LMi repbase;    DNA;    INV; 1702 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1702
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3270-3270 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1374
FT                 /product="Mariner-27_LMi_1p"
FT                 /translation="MTCTTSNDHQMSLIVCFALRPSQYLCITDRVNMVQYT
FT                 FAEYTDMLLVYGEAGGNGRAASRLYHERFPQRHTPSHKLFAQVTQRLRETG
FT                 TFTVRRQDCGAPRRRRTPEFEGVLRRIEDSPSTSSRTIARAMAVSHSTVLD
FT                 VLHEQQLHPYHLQRVHAMGPADFPQRVAFCTWFLHRCIDAPLFPRRVLFTD
FT                 ECRFTRECVLNARNSHVWADENPHATHVQGFQYRFGINVWAGILDGHVIGP
FT                 YLLPSKLTGPAYLVFLRHVLDPFLEDVPLNVRQEMWFQHDGAPPHFSLAVR
FT                 RHLNRRFGERWIGRGGPTAWPPRSPDLTPMDYFLWGRMKSLIYETPVETEE
FT                 DLLARVLAAAQDTEETPGGMERVYQNMLRRYNVCNDVGGRHIEPLL"
XX
SQ   Sequence 1702 BP; 432 A; 403 C; 433 G; 434 T; 0 other;
     cagggtggtc ggaaattccc gttacaaact tctaggactt gtagagggta gtgagtacat        60
     aacattttga ataggaaccc atgtccggaa acgtatcgtt tccgttctac gacagtttca       120
     attcagatgt gtaactcgtc aacgtctgct tagggacaga gaaacgtctc agagttccct       180
     gtcctggtat gcaacagggt agacacgatg acgtgtacta cgtcaaacga tcaccagatg       240
     tcacttatcg tctgctttgc tttgagaccg agtcaatacc tgtgcatcac cgatagagta       300
     aacatggtgc agtacacgtt tgcggaatac acagacatgc tccttgtgta tggcgaagct       360
     ggaggtaacg gacgagctgc tagtcggctg tatcacgaac gttttccaca acgtcacact       420
     ccatcgcaca aactgtttgc ccaagttaca caacggctac gagaaacggg taccttcacc       480
     gtgaggaggc aggactgtgg tgctccacgg cgacgccgca ctcccgaatt tgaaggtgta       540
     ctgcgtcgca ttgaagatag cccgtcaacg agttctcgaa caattgcgcg tgcaatggct       600
     gttagtcaca gtaccgtctt ggacgtcctg catgagcaac aattacatcc gtaccactta       660
     caaagggtac acgctatggg tccagcagat tttccacaac gcgtcgcctt ctgcacatgg       720
     ttcctgcacc gttgcatcga cgcgcccctg tttccacgtc gagttctctt cacagatgaa       780
     tgtaggttca caagggagtg tgttctgaat gctcgaaata gccatgtctg ggcggacgaa       840
     aaccctcatg ccacgcatgt tcagggattt caatacaggt ttggaattaa cgtgtgggca       900
     ggtattctgg acggtcatgt gattggacca tacctccttc catccaagct cacgggtccc       960
     gcatacttag tcttcctacg acacgtattg gacccgttct tggaagatgt gccattgaat      1020
     gtccgtcagg aaatgtggtt tcagcatgat ggtgcaccac ctcacttttc actggctgtc      1080
     cggagacatc tcaacagacg atttggtgaa agatggatag gccgtggtgg tccaaccgcg      1140
     tggccgccac gatcgccgga tttaacccct atggactact tcttgtgggg tcgtatgaag      1200
     agcctaattt atgagacacc tgtagagaca gaggaagatc tgctggcacg agttctggcc      1260
     gctgcacaag acactgaaga gacaccaggt gggatggaga gagtgtacca gaacatgctt      1320
     cggaggtaca atgtgtgtaa cgacgttggt ggtcgccaca tcgagccgct gttgtaatgc      1380
     atcagtacgt tgcggctggt gccgtagatg ctgggttctt gttgttgtcg actaatgtaa      1440
     accataaggt gtaaattgta atgaaaatgc gtaagtaata acggaacgat tcagtattct      1500
     tttcaaattg attgcaacaa ttgtactggg tcacgcctaa ttacattcct caagtaggag      1560
     tggatgagat aatcatctga attgaaaccg tcgtggaacg gaaacgatac gtttccggac      1620
     atgggttcct attcaaaatg ttatgtactc actaccctct acaagtccta gaaggttgta      1680
     acgggaattt ccgaccaccc tg                                               1702
//
ID   Mariner-27_RPr repbase;    DNA;    INV; 1569 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-27_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1569
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3274-3274 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1569 BP; 515 A; 243 C; 308 G; 500 T; 3 other;
     cagtcaggga caaaatgata gacacacctc caaaagcatc ttttatattt tcctgaattt        60
     ttctttttaa atttaatgat tattttctta atttattgcc ttttggtatc acacttttat       120
     tggcatattg cggataggtg aaagtttact tttatattct caaatatttg taaaaaatga       180
     atatttacgt gggacaaaaa gatagacaca cttgtgtttt tgttgactta atgcttcagt       240
     taaattttta ttcgctttct aatatagtgc acagtctttc aatttttata ccacatttta       300
     ttatttcatt tttgttaaaa aaaataattt ttttttataa tgggaagagg gaagtgtttt       360
     agcgacgaag aaaggaggtt aatcaaatct ctttcggaat cgggtatgtc tgccagagaa       420
     attggacgcc aaataaagag gagtttctcg tcagtgtgta aatttttgaa attcggggaa       480
     caatatggcg ctgggaggtc aamaggcasg ccttcggcct ttcgaagcgt gaaaaaaggg       540
     tmattttaag agctgcctca aactctacgc tctcagctcg ggcaattgct gcaaatgttg       600
     ctgtccacac taatgtgaaa aatgtaagga ggtttttaag gaagcaagat acgttggtca       660
     gaaaaaaatt aaggacgaaa ccagtcttaa cacaaaggca caaattcggc cgactagatt       720
     ttgcacgaga acacatgtcg tgggtcggag aatggaataa agtgattttt tcggatgaaa       780
     aaaaagttaa tttagatggc cctgatggat ttcgatatta tttccatgat ttaaggaaag       840
     aagagaaatt tttgtctaaa cggaaaatgg gtggtggatc cataatggtg tgggcaccca       900
     taggcttcct aaataagggc gaaataactt ttcttcctcg cagagttaac gccgaagcat       960
     acaagaacat attggaagaa gcaaaaaatt gagtttctcg ggatggctgg tgaaaattat      1020
     atttttcagc aagacaacgc tccagttcat aatgctcgga caataaaaag ttggttccaa      1080
     gatcataaca ttgaaactct ttcttggcca gctctttctc cagacctcaa tataattgaa      1140
     aatctatggg gaatcctatc caggaaggtt tacgacaatg gtcgccagtt cgcaatgttg      1200
     aggaattgaa aatcgcaatt ttgtcatctt gggaagatat cgggcaagaa gaagttcaaa      1260
     atttgtacag aagtcttcca aatagaatgt tcgaagtgat acacaacaga ggaggctcaa      1320
     caaaatatta agcgacagct gaaactccaa aactgaaggt gtgtctatct ttttgtccca      1380
     catcaaagtg attattttaa gtttatgctt tatacaaatt gacacattca taaattaatc      1440
     tgattttact gtttattcct tattttaatg tctgatgcaa tattttcaaa agtcagaaat      1500
     aaattaaaat tgcaaataaa cattttctaa aagaaattgt gtgtgtgtct atcattttgt      1560
     ccctgactg                                                              1569
//
ID   Mariner-27_SIn repbase;    DNA;    INV; 1273 BP.
XX
AC   .
XX
DT   18-APR-2012 (Rel. 19.02, Created)
DT   18-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-27_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1273
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 391-391 (2014).
XX
DR   [2] (Consensus)
XX
CC   >82% identical to consensus. 31bp TIR.
XX
SQ   Sequence 1273 BP; 405 A; 225 C; 272 G; 371 T; 0 other;
     ttgggtgagt gcaaaagttc gtgcccgatt tcaatagatg tcattaggag agttgtatgg        60
     cagcactgat tgttatgtat agtattgcat attgacatct atggaaaagt gacatattca       120
     atgatcattt gagcgaaaga cttgtgtgtt ttgattgaat ttacgttgtg aaaaaatttt       180
     gaaaatgagc gaagaaaagt tgcatttacg gcatgttatg ttttatgagt tttggaaggg       240
     tgtaacagtt ggaactgccg taaaaaaaca ttcaagatgt ctatcaggat cgtgcatcag       300
     caatttaaac tgttaagaaa tgatttgcga aatttagatg tgtgattttc accttgacga       360
     ccagtcacgc tctggccgac ctttggcata gatgatgaca ttgtgcgcaa tttagtgcaa       420
     aataattcac gaatttcaac agaagagatt gctgagagac tcaacattga cagatcgacc       480
     gcatttcggc atttaaaaaa gattgggtac actttgaagc tcgatatatg ggtgccgcat       540
     ttgctaaccg aagcgaacaa attgaatcga gtttctgcag ctgtttcttt gcttggccaa       600
     ctaaatagtc gtttttggat cgacttgtga ctggcgatga aaaatggatc ctgtacaata       660
     atgttcaacg caaatgcact tggaaactag cagatgagcg tgcagaatcc atggcaaaag       720
     ccaatttgca tcctgagaag gtgatgcttt ctgtttggtg ggattgcaaa ggaataattt       780
     attttgagct gctccccgtt ggccaaacga ttaattctga caagtactgt caacaattag       840
     acaatttaaa gatagcaatt caaggagaag cgtccaatcg taagggagtc gtttttcatc       900
     acgacaacgc gaaaccacac actgcaaaac agaccttgcg caaactaaag gaactgaaat       960
     gggatgtcat atcacaccca tcgtattttc ctgatatcgc accatcggat tatcacttgt      1020
     ttcgatcatt gcaaaacgat ttgaatggaa aaaattcgca ttctttggaa gccgtcaaaa      1080
     atcatatttc ttccttcttc aacgcaaaac cgaggtcgtt ttatgattga ggcatccgta      1140
     tgctaaccag aacgttggga aaagattgta gaaaacgacg gcgattacat cattgattaa      1200
     aaaaaaattt acatgccaaa ttactgcttg agttttaata ataaatcggg cacgaacttt      1260
     tgcactcacc caa                                                         1273
//
ID   Mariner-28_AEc repbase;    DNA;    INV; 2476 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-28_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2476
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 574-574 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           642..1709
FT                 /product="Mariner-28_AEc_1p"
FT                 /translation="MLTEQERISLLMMRGWGDRRRSYAHVTELFNQTFRNE
FT                 DNGISKSTVIRTVQRFEEMGFVKDRNRQGRPAIATNPDKRLNVLQSFIEDP
FT                 RNSIRKVAQQHDIDPMSVHKILKKEKFHPYKIHLAQELCEDDFDRRIEFCE
FT                 SMMLNIDRNLLFVVNIIFSDEATFELTGNVNRHNCRYWSDENPHWMYEAHT
FT                 QNQQKVNVWAGILNEAIIGPFFIEGNLNADNYLAMLQDEIVPAIRNIARQN
FT                 FNDIWFQQDGAPPHYGLRVRQYLNEVFPNRWIGRRGYIEWPARSPDLNPLD
FT                 YFLWGYLKGKIYNTKPRNLNDLRQRIINEFRIMPREFCRNAVLSFYNRLAH
FT                 CQTAEGRQFEYLL"
XX
SQ   Sequence 2476 BP; 755 A; 469 C; 460 G; 791 T; 1 other;
     cagggtgtag aaaaagtccc ggacccctta aatatcttga aaagtaatca tttttgagaa        60
     aaatgtttta tacaaaagtt gtagggttga aaatgatcta ttgactgacc ttatcaattt       120
     gaccttggat ggcgccacca aggtcaagtc aaggtcaaat cgattttttt aaacgaaaca       180
     ccctattttt gattttagaa tctaatagct gaggtcggga gctttccaaa acactataat       240
     aaagcctctt tttaatcagt acttttcaag ttatgagagt tgaaagttac ggaaccgccg       300
     gcattagcat tatctaaggt attacgtaga gattgcccga ctggatttat gagtcatgta       360
     tgtgcccgcg aatgtctgta tctctatctc ctcctccctc ctaccctttc cttctccttc       420
     ccccccccct ttccctccta ctcctttcca tcccctctcc ctccttccca ccctttcaac       480
     aaagctggag actacataag ctagagatct ctcctgtcaa gttcactctt tctgtgacct       540
     gcgattgaga aggtatactt tttcgtgata ctccgttctg agattgctta tcgccacata       600
     gttatctttg tttataaagt atttatttaa aatattttat aatgcttact gaacaggagc       660
     gtatatccct tttaatgatg cgaggatggg gtgatcgtag gaggtcttac gcacatgtga       720
     cagaactttt caatcaaact tttaggaatg aggacaatgg tatatctaaa tcgactgtta       780
     ttcgtactgt acaacgtttt gaagaaatgg gttttgtaaa agaccgtaat agacaaggta       840
     gaccagcaat agcgacaaat cctgataaaa gattgaatgt tctacagtct tttatcgaag       900
     atccgcgtaa ttcaattcgc aaagttgcac aacaacacga catcgatcct atgtcagttc       960
     ataaaattct aaaaaaggag aaatttcatc catataagat ccatctggcg caggaactat      1020
     gtgaagatga ttttgatcgt cgcattgaat tttgcgaaag tatgatgtta aatatcgata      1080
     gaaatctttt atttgtagtc aacattattt tttcagatga agctactttt gagctaaccg      1140
     ggaatgtaaa tcgacataat tgcagatatt ggagcgatga aaatcctcat tggatgtacg      1200
     aggcacatac tcagaatcag caaaaagtca acgtatgggc tggaatttta aatgaagcca      1260
     ttattgggcc tttctttatt gaaggtaatt taaacgctga caattactta gccatgcttc      1320
     aagatgaaat agttccggca atccgaaaca tcgctcgtca aaacttcaat gacatttggt      1380
     tccagcaaga tggggcgcca cctcactacg gtttacgagt acgccaatat ctgaatgaag      1440
     tttttccgaa taggtggata ggaagaaggg gttacattga atggccagca cgatcgcctg      1500
     atctaaatcc actcgactat tttttgtggg gatatttaaa gggaaaaatt tataatacta      1560
     aacctcgaaa tcttaatgat ttacgtcaac gaataataaa tgaatttaga atcatgcctc      1620
     gcgaattctg tagaaatgca gtcttaagtt tttataatcg tctagcacat tgtcagactg      1680
     cggagggacg ccaatttgag tatttgctat aatatgtaat attcttttaa ccctagctcg      1740
     ccatactggg atatgacgta tctaatgcga tttttcacat tgcaattcag actttaactt      1800
     tttatgatgt aatttaagaa taaaatattt tttgtttcat ctttgtttat ttgttcttgt      1860
     cttactctag agatatcaat tttgcatgtg ataagttaaa aatatgtttt ctattcagag      1920
     atataacttg acgaagttcc agatcccggt ggggtctagc cgagaaagta actaaaaact      1980
     ggtaggtaag gcgagctggg ttaaaggaat gacaaatgct caaacgaatg acagttgatt      2040
     tagatatacc attgtcttta tttctaaaag attgattgaa aagtcttgtc gcttgcgtaa      2100
     gacctcctat gaccacccca tcctcgcatc attaaaaggg atacgagcac cttagcttag      2160
     gtaatgctaa tgccgcggcg gttccgtaac tttcaactct cataacttga aaagtactga      2220
     ttaaaaagag gctttattat agtgttttgg aaagctcccg acctcagcta ttagattcta      2280
     aaatcaaaaa tagggtgttt cgtttaaaaa aatcgatttg accttgactt gaccttggtg      2340
     gcgccatcca aggtcaaatt gataaggtca gtcaatagat cattttcaac cctacaactt      2400
     ttgtataaaa catttttctc aaaaatgatt acttttcaag atatttaagg ggtccgggac      2460
     tttttctaca ccctgx                                                      2476
//
ID   Mariner-28_DF repbase;    DNA;    INV; 943 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-28_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-943
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 795-795 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 28-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 943 BP; 294 A; 206 C; 204 G; 239 T; 0 other;
     cagggttgcc catattcgac ggacccatct gacgacgcca taacttttga cagagatgcc        60
     agatcgctta atgacatacc gcgtttgaag cgtcagtcca agcagatttt taccatggaa       120
     caatacacgc cacgcgagcg ctctgaaata gttgaaattt acattcaaca gaacaagtca       180
     attgtgaaaa ctcaacgtgc ttttaaaatc atgtccgatg aagcccattt cacattgaat       240
     gggaccgtaa ataagcaaaa ttgccgtatt tacgccactg aaaatcctga gaagattcaa       300
     gaagtgcctc ttcacgacga aaaagtcaca gtttggtgcg gcgttagttc gaaaacggtc       360
     attgggccgt ttttcttcca aaatgaaaat ggccatgctg ttaccatcaa ccaggagcgt       420
     tatcgcgaca tgatgaccaa ttttgtgatg ccaattattc gtcgaaagcg tatgaggcag       480
     ttctggtttc aacaagacgg cgctccaccg cacacaagtc gcataacaat cgattttctg       540
     aagaaattgt ttccgggccg tttgatgtcg aaaagtggtg atttggactg gccaccgcgt       600
     tcgcccgatt tgacgccgcc tgacttcttc ttgtggggat atttgaagtc aaaggtttac       660
     gttaacaagc caaggaccct agaagagctc aaggacaaca ttcgtgaaga aatagccgct       720
     attccggccg aaatgttggc gaaaacgatg gaaaatgctg caaaaagggc acaatacgcc       780
     atcaacgcca gaggcggcca tttgaaagat atcatattca aaaattgatg taaacaaatc       840
     tacttggaac aaattaaatg attaagattg ccaaccgcca aatttttatt ttttctttga       900
     ttttaaaaaa aaaacatggg tccgtcgaat atgggcaacc ctg                         943
//
ID   Mariner-28_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-28_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 868-868 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-28_HSal_1p"
FT                 /translation="MSKFEPNKRHLREVLIFCFNWKKTAAEAHRMLVEVYG
FT                 DNAPSDKTCREWFRRFKSGDFDVEDKERSGRPRVFEDEELQALVDEDPCQT
FT                 QKQLAEALNCAQSVISDRLKALGKVYKEGKWVPYELKPRDIERRKTTCEIL
FT                 LARQQRKGFLHRIITGDEKWIYFDNPKRRKTICDPGQPSTSTPKRNIHGKK
FT                 AMLCIWWDQKGVLYHELLKSGQTVTGDLYREQMIRLSRALHEKRLEYETRQ
FT                 HKVILLHDNARPHVTKSVKETLEALRWEVLPHAAYSPDCAPSDYHLFRSMA
FT                 HALADECFNSYEDVEKWVSDWIASKDESFFRRGIRLLTERWEKVIANDGQY
FT                 FD"
XX
SQ   Sequence 1288 BP; 402 A; 259 C; 292 G; 335 T; 0 other;
     ttaggtaaat cggaaagttc cgtccgtcta gcggcaagta gctatagcta gaactgtcgt        60
     taacctctaa tgtctaaacg aagcttaatg gtttgttttg acatctgtca ataacattca       120
     gtacataaaa gtatacgttt gcatcaataa cattgttttt cactgcatcg aaaatgtcga       180
     aatttgagcc aaataagcgt catttgcgcg aagtgttaat cttttgcttc aattggaaga       240
     aaactgcagc tgaagctcat cgaatgcttg tagaagttta tggtgataat gctccttccg       300
     ataaaacatg cagagaatgg tttcgacgct ttaaaagtgg tgattttgat gtagaggaca       360
     aagagcgttc tggacggcca agagtattcg aagacgaaga attgcaggca ttggtggacg       420
     aagacccatg tcaaacgcaa aagcaacttg cagaagcatt aaattgtgct caatctgtca       480
     tttccgatcg tttgaaagcc ttaggaaagg tttacaagga aggaaaatgg gtcccatatg       540
     aactgaagcc aagagacatt gaaaggcgaa aaaccacctg cgaaattctg cttgctaggc       600
     aacaaagaaa ggggttttta catcgtatca tcactgggga tgaaaaatgg atttattttg       660
     acaaccccaa acgtcgaaaa actatttgcg atcccggcca accctcaaca tcgacgccaa       720
     agcggaatat ccacggaaag aaggcaatgc tctgtatttg gtgggatcag aagggtgtgc       780
     tgtaccatga gctgttgaaa agtggtcaaa cagtcacagg ggatctctac agagaacaaa       840
     tgatccgttt gagccgagca ttgcacgaaa aacgactaga atatgaaacg agacagcata       900
     aagtgatttt gcttcatgac aacgctcggc ctcacgtcac aaaatctgtc aaggaaacgt       960
     tagaagcact tcgctgggaa gtgttacccc atgcggctta ttcaccagac tgtgcccctt      1020
     ccgactacca cttgtttcgg tcgatggcac acgcacttgc tgacgaatgc ttcaattctt      1080
     atgaagacgt cgaaaaatgg gtctctgact ggatagcctc caaagatgag tcattctttc      1140
     gccgcggaat tcgcttgctg accgaaagat gggaaaaagt catcgctaac gatggacaat      1200
     actttgattg atgtactttt tcattttgtt tcttaaataa agccatacgt tttgcaagaa      1260
     aacggacgga actttccgat tgacctaa                                         1288
//
ID   Mariner-28_RPr repbase;    DNA;    INV; 879 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-28_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-879
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3275-3275 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           36..854
FT                 /product="Mariner-28_RPr_1p"
FT                 /translation="MSYSIDFRRKVISTREEEGLSIRETAKQFRIGPASVS
FT                 RWINQIASKASTTRQRKSDKSELIKDVEPYPDAYQKERAERFGVCQKAIWQ
FT                 ALKKLGLTYKKTLRHPKADESARQAFQQKIQQYEKEGKPIVFIDESGFPHD
FT                 TPRTHGYSPKGQRCFGLKNGGAKGRTNVIGALLGTTLFAIGLFDININSDV
FT                 FYSWVTQVLIPVLPKNRVIVMDNATFHKKHNIQQVIIDAGYMVEYLPTYSP
FT                 DLNPIEHKWAQAKSKKRESGCDTEILFSVHMV"
XX
SQ   Sequence 879 BP; 294 A; 171 C; 188 G; 226 T; 0 other;
     tagctaaacg acttaatttt gattacatta tttaaatgag ctattcaatt gattttagac        60
     gtaaagtgat atctacacgg gaagaagaag ggttgagtat ccgagaaaca gcgaagcaat       120
     ttcggattgg ccctgcctct gtatcgcgtt ggattaatca aatagcgtca aaagcatcga       180
     ccacgcgtca gcgaaagagc gataaatccg agttgataaa agatgttgaa ccatatccag       240
     atgcttacca aaaagaacgt gcagagcgtt ttggcgtttg tcagaaggcc atttggcaag       300
     ctcttaaaaa gctgggattg acctataaaa aaactctacg tcatccgaaa gccgacgaaa       360
     gcgcccggca agcatttcaa caaaaaatac aacagtatga aaaagaaggt aaacctattg       420
     tttttattga tgaaagtggt tttccacacg ataccccacg gactcacggc tattccccaa       480
     aaggtcaacg gtgttttggc ctgaagaacg ggggagccaa gggaagaaca aatgttatcg       540
     gcgctttatt aggcacaacg ctgtttgcta tcggattatt tgatatcaat attaacagcg       600
     atgttttcta ttcctgggtc acacaagtcc ttatcccagt actccctaaa aacagggtaa       660
     tcgtgatgga caatgcaact tttcacaaaa aacataatat tcaacaagtc atcatcgatg       720
     cagggtatat ggtggagtat ttgcctacat attcgccaga tcttaacccc attgagcata       780
     aatgggcaca agcaaaaagc aaaaaaagag agagtggttg cgatacagag attttgttct       840
     cagtccatat ggtgtaatca aaattaagtc gcttggcta                              879
//
ID   Mariner-28_SIn repbase;    DNA;    INV; 1226 BP.
XX
AC   .
XX
DT   18-APR-2012 (Rel. 19.02, Created)
DT   18-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-28_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1226
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 392-392 (2014).
XX
DR   [2] (Consensus)
XX
CC   >80% identical to consensus. ~30bp TIR.
XX
SQ   Sequence 1226 BP; 384 A; 234 C; 257 G; 351 T; 0 other;
     ttgggttgga agaaagtaat gtcgtatttt ctcatagatg gctttatgtg ttttattaga        60
     aagaaacttc aatttaaatg gcttaaatgc atgcttttgt gatagctgta acctctaagc       120
     atcatttagt gtatgtagaa attgaatgca gaagcgtttg tattcactta aaatcgagag       180
     caaaataagt agtattttcg ctgtttgatg ttgttttatt tccgaaaagg aaaaaaaacg       240
     cgacacaaaa aaagtgacaa tgcgataact gaactgcatg tgtcaaagat ggtttgcgaa       300
     gtttcgtgcc ggtgatacga cactcgaaga tgagaagcgc actggtcgat cgactgtcgc       360
     tgatgacgat taaagacttt aatcgcgaat aatcagcggt acacgacgcg gagagattgc       420
     agagatactc catttatcac atacaaccgt catcgagcat ttgcataagc tgtggatacg       480
     tgaatcgtct tgatatctgg gtgccgcatg atttgtctga caaaaattta attgatcgca       540
     tttccatctg tgatttgtta cttaaacgca acgaaaaaat ccatttttaa acgaatcgtg       600
     acgggcgatg aaaaatgggt cttgaggaaa acattcagaa aagccgttga ccactccaaa       660
     gcctgggctt catccggaga agatcatgct gtgtatttga tgggactgga aggtgtcgtg       720
     tattatgagc tccttccaaa gaacgtacgg cttaattcgg acaagtactg tgcccaattg       780
     gacaaactga aggaagccat tgcagaaaaa cgcccagaat tggtgaatag aaagggtgtt       840
     ttattccatc aggacaacgc caggcctcat gtttctttaa ccacccggaa aaaatattgc       900
     aacttggctg gaatattcta tcgcacccag catattcacc agacattgct ccttcggatt       960
     actacttgtt ccgatcctta cagaacttcc ttaatagtaa ggcgtttcac tttttctttg      1020
     gaggactgca aaaaccacct tcaacagttt ttcgctgaga aaacgcccga gttctacgcg      1080
     cgaggaatta tgcagctgcc cgaaagatgg caaaaggtta taaaaaacaa cggccattac      1140
     atcactgatt gaagctgttt ttaaatatga ataaatttgc tccaatttta actaaaaata      1200
     cgacattatt ttttcttcca acccaa                                           1226
//
ID   Mariner-29_AEc repbase;    DNA;    INV; 2246 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.03, Created)
DT   15-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-29_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2246
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 575-575 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           744..1775
FT                 /product="Mariner-29_AEc_1p"
FT                 /translation="MSYSNEEAYDMLLILGECRGSFAGAERLWRQRFPNRT
FT                 PHSRKVFSRLANRIRISGVVQPQHNKSRQIRRPIRNERTAEILASAELNPH
FT                 DSLRRRERDSGISRNIIWLILKENKLKPYRMSVHQSLTHDDFEQRLAFCNW
FT                 IREQPPDFHLKILFSDECTFKSDGSVNTWNCRYWSENNPRWLRQIDHQHIW
FT                 KVNVWCGIIGSQIVGPIFFENNLDSNRYSVLLENFPLRLRLDMWFQQDGCP
FT                 PHTSRVARAVLNTMFPNKWIGKYGPINYPPRSPDLTVLDYYLWGRIKDLVY
FT                 RERPTTRDDMIRRITEAIRSLDANEILHATNSFQSRVDACIVENGGHFEHL
FT                 S"
XX
SQ   Sequence 2246 BP; 670 A; 457 C; 455 G; 664 T; 0 other;
     cagggtgtct cagaccaccc gtccaccctt tttatctccg caggataaga tccaatcaaa        60
     aatatgttca gaccaaagtt gtggggttta aaaagatcta tttattgatc atatcagttt       120
     gaccttgggt ggctttgcca aggtcagatc aaggtcacat cgattttttt aaatgaaaca       180
     tcctactttt tattctagaa tctaatcagc cgatgtcaag agctttccaa aaccctataa       240
     taaagtatct tttgattaag taaatctcga gttatgaaga ttaaaagtta cagtaccgcc       300
     ggcattagca ttacccaagg tgtaccgcgt ggaggttgcc cggtcggatt tacacctttt       360
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcgcgcgc gcgcgcgcat ctacatgtac       420
     gtgtacttgc atatgttggt gtttctgaat aagtaaatgt ttacttgttt atgagagatg       480
     ttcaaaatga ccaccgtttt cttactaaag ctgaccgcgc gacagctttg ttgctgtttc       540
     gctttaataa gcactccgac tcattcgcac gcaacggctc tccgcgcgca gcccgttggg       600
     accgagccca aacgtccggg ccctagtaat aaatattcaa ccttagtaga gactttccta       660
     tgttgctata aaagtgaatc agagataaat aaatattcac tatttcgttt tacttctcaa       720
     agttttcata gatttatcca gccatgtctt attcaaatga agaagcatac gatatgttgc       780
     taattttggg tgagtgtcga ggttcatttg ctggtgctga aagattgtgg cgacagcgtt       840
     ttcctaatcg gactcctcac tcgcggaaag tcttttcacg attggctaat cgaatcagaa       900
     ttagtggtgt cgttcagcct caacataata aaagtagaca gatccgccgt ccaattagga       960
     atgaaagaac agcggaaatt cttgcatcgg cagaattgaa ccctcatgat tctttaagac      1020
     gtcgagaaag ggattctggt attagtcgta acattatctg gctcatttta aaagaaaaca      1080
     aattgaaacc ttacagaatg tctgttcatc aatcgttgac tcatgatgat tttgaacaga      1140
     gacttgcatt ttgcaactgg ataagagagc aaccaccaga ttttcacctc aaaattttat      1200
     tttctgacga atgtacattc aaaagtgatg gatctgtcaa tacttggaac tgccgttatt      1260
     ggtcagaaaa taatccccgc tggttaagac aaatagatca tcaacatatt tggaaagtta      1320
     atgtttggtg cggcattatt ggaagtcaga tcgtaggtcc tattttcttt gaaaacaatc      1380
     tagacagtaa tagatattca gtcttgttag aaaattttcc attgagattg cgcctagaca      1440
     tgtggttcca acaagatgga tgtccgccac atacatcaag agttgcccgt gcagtactaa      1500
     acactatgtt tccgaacaaa tggataggca aatacggtcc gatcaattat ccacctcgat      1560
     caccggacct caccgttctt gattattatt tgtggggaag gataaaagac ttggtatacc      1620
     gtgaacgtcc aactactaga gacgatatga ttcgtagaat aactgaagca attcgatcct      1680
     tggatgctaa tgaaatttta catgcaacta attccttcca aagcagagta gatgcttgca      1740
     tcgtagaaaa cggtggtcat tttgaacatc tctcataaac aagtaaacat ttacttattc      1800
     agaaacacca acatatgcaa gtacacgtat gcatgtagat gtgcgcgcgc gcgcgcacca      1860
     cacacacaca cacacacaca cacacacaca caaaggtgta aatccgaccg ggcaacctcc      1920
     acgcgtacct tgggtaatgc taatgccggc ggtactgtaa cttttaatct tcataactcg      1980
     agatttactt aatcaaaaga tactttatta tagggttttg gaaagctctt gacatcggct      2040
     attagattct agaataaaaa gtaggatgtt tcattttaaa aaatcgatgt gaccttgatc      2100
     tgaccttggc aaagccaccc aaggtcaaac tgatatgatc aataaataga tctttttaaa      2160
     ccccacaact ttggtctgaa catatttttg attggacctt atcctgcgga gataaaaagg      2220
     gtggacgggt ggtctgagac accctg                                           2246
//
ID   Mariner-29_DF repbase;    DNA;    INV; 938 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-29_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-938
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 796-796 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 938 BP; 296 A; 190 C; 192 G; 260 T; 0 other;
     cacggtgcgt ccattaagtt tcgagacatg aaccatatct cagcaaatag tagcgccagc        60
     taggtgttcg aaggtgcatt ttaaagctta aacctttttc tattgacgtg tcaaacttca       120
     ttacatttgc ttgacaaata acaaggatat gacagttttc cctaaacagt ttttgatctg       180
     atgttgaaat tccaacatgg aacaaagagc aaagatcatt gcagagaagt cgttgcagcc       240
     gccagaaatg atccaaactt tctgaaatca attgttactg gcgacgaaac atggtgcttt       300
     cagtatgatc cagaaactaa gcgccaaagt tcggaatgga agtcgaaaaa ctcaccacaa       360
     gccaaaaaaa gcgaaaatct ccttcaaaaa tcaaaacaat gctcatcact ttcttcgata       420
     gtaaaggcat tatccacaaa gagttcgttc caactggtca aacggtcact ggcacgtatt       480
     atcttgaagt tttaaagcat ttgatggcca gaatccgtcg tactcgaccc gaatatcgcg       540
     atccagagaa atggtgtctg ttgcacgaca atgcgccgag tcacaaatca atcattgttc       600
     gtcagttttt ggcccgaaat caagtctgtg tgttggacca cccaccgtat tcacctgatt       660
     tggcgccgtg tgacttctcc ttgtttccaa agttgaagtt gaagttgaaa ggatgctttt       720
     ttgaagatgt tgagaccatt aaaacggctt cgacacgagc attggaggct attccacaaa       780
     atgagctgaa gcacgcattt gaatcactat tgaatcgctg tgagaagtgt attaaagcga       840
     agggagaata cttcgaataa taaatttgaa aaacttgaaa tatcttgttt attttgcgat       900
     ttatggaatc agtctcgaaa cttaatggac gcaccgtg                               938
//
ID   Mariner-29_HSal repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-29_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 869-869 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1058
FT                 /product="Mariner-29_HSal_1p"
FT                 /translation="MVSFLLSIEATNFSLFRKMEKSEFRVVIKHLYLKGLT
FT                 PKEIKAELDEVHGTSAPVFATVYNWVNEFKRGRTSTKDEHRSGRPVEVTTP
FT                 EMIDKIHDMVLSDRRIKVREIVEATGISQGTVFSILHEKLGVKKISARWVP
FT                 RLLSVENKRNRVVDSEAVLALFRRNPDEFLRRYITVDETWIHHYTPETKEQ
FT                 SKQWVFEDERAPKKAKTVKSAGKVMATVFWDARGIIYTDYLEKGQTITGEY
FT                 YASLLHRLSEEIKKKRPHLKKKKILFHQDNARVHTCAVSMAKIMELKFELL
FT                 QHPPYSPDLAPSDFFYFQT"
XX
SQ   Sequence 1293 BP; 411 A; 246 C; 293 G; 343 T; 0 other;
     cgagggtcgt tcaataagtc cttagaaaat ccaagagatg gcgctcgtag tatcgaaaat        60
     ggtttgtttt tagtaagcat cattactcac tagacagctg ttaaagtctc agttatatcc       120
     atcacatggt ttcattttta ttgtcgattg aagcaacaaa cttttcttta tttagaaaaa       180
     tggaaaaaag tgagtttcga gtggtgatta aacacttata tttaaaaggc ttaacaccga       240
     aagagattaa agctgagtta gatgaagttc atggcacatc tgctcctgtg tttgcaactg       300
     tttacaattg ggtaaatgag tttaaacgtg gccgtacatc cacaaaagat gaacatcgtt       360
     cgggacgtcc agtggaagtg actacccccg aaatgattga caaaatccac gatatggttt       420
     tgagtgatcg acgaatcaaa gtgcgcgaaa tagttgaggc cacaggcata tcgcaaggta       480
     cagtgttttc aattttgcac gaaaaattgg gtgtgaaaaa aatctcggca agatgggtgc       540
     cgcgtttgct ctcagtggag aataaacgca atcgtgtggt cgactctgag gctgttttgg       600
     cgcttttccg tcgcaatcct gacgagtttc tgcgtcgata cataactgtg gacgaaacat       660
     ggatacacca ctacactcca gagacaaagg aacagtcaaa acagtgggtt tttgaagacg       720
     aacgggctcc gaagaaggcg aagacggtga aatcggccgg caaggtgatg gccacggttt       780
     tttgggatgc acgcggaatc atctacaccg attacttgga aaaaggacaa acaataactg       840
     gagagtatta tgcgtcgtta ttgcaccggt tgagcgaaga aatcaagaaa aaacgtcctc       900
     atttgaaaaa gaaaaagatc ctcttccatc aagacaatgc acgggtgcac acctgcgcag       960
     tttcgatggc caaaattatg gaattaaagt tcgaattatt acaacatcca ccgtattcac      1020
     cggatttggc ccccagtgac tttttttatt tccaaacttg aaaaaatggc tcggcggaca      1080
     acggttcacg tcgaacgagg aggtcatcgc ccaaacagat gcctattttg aggaccttcc      1140
     gaaatcctac tttttggacg gcttaaaaaa gttggagaaa cgcttggaaa agtgtataga      1200
     gctaaaagga gattatgttg aaaaataaaa aaaaatctac ccaaaataat ttgtttttct      1260
     atctttttct aaggacttat tgaacgaccc tcg                                   1293
//
ID   Mariner-29_LMi repbase;    DNA;    INV; 1344 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1344
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3271-3271 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1223
FT                 /product="Mariner-29_LMi_1p"
FT                 /translation="MAAFTGPERASCVFWFEESKSATTVQRKFRTKYAKDP
FT                 PSRPTIYEWHKCFVETGCSVRHKKVPGRPSTSDEVVEQVRQSFVNSPTKST
FT                 RRASRELQVPHTTVWRVLRKRLHLKPYRLSLLQAIKDTDKIARKNFCADML
FT                 DRVDDDEHFLDNIIFSDESTFHLSGKVNTHNCRIWGSENPHETLQHARDSP
FT                 KVNVFCALSKKKMYGPFFFQERTINGIVYLDMLQQFLIPQIDDDGERNVYF
FT                 MQDGAPPHYLTDVRDFLNDRFPGKWIGRAAPIAWPARSPDLTPLDFFFWGF
FT                 IKDMVYVPPLPATLPELRARIYAAAEQVTPAMLMRVWEEISYRWDVCRITN
FT                 GSHIEHF"
XX
SQ   Sequence 1344 BP; 393 A; 285 C; 303 G; 363 T; 0 other;
     cagggtgttt caaaagggac tttacaactt cgaaaattaa tatatattta ttaaaaagag        60
     gtacagagat ggttttagtg ttgtttcaaa ggaaaacaca tcaagttttg actcgcgtag       120
     ttcgctagtg cagaatcgcg ccgcaacaag cgctagcggc agttacgtta aagatggctg       180
     ccttcactgg acccgagcgt gctagctgtg tgttttggtt tgaagaatca aagtcggcga       240
     caacagttca gcgtaaattt cgtaccaagt atgctaaaga tcctcctagt aggcctacaa       300
     tttatgagtg gcataaatgt tttgtagaaa cggggtgctc agtaagacat aagaaagtac       360
     caggtcgtcc aagcacatct gacgaagtcg ttgagcaagt gagacagagt tttgtcaaca       420
     gccctacgaa atcgacccgg cgtgcatctc gtgaactgca agtcccacat acaacagttt       480
     ggcgtgtgtt gagaaaacgt ttgcatttga aaccgtacag attgtcgctt ttacaagcaa       540
     ttaaagacac tgataagatt gcccggaaga acttctgtgc ggatatgtta gaccgagtgg       600
     atgatgatga acatttcttg gacaacataa tcttttctga cgagtcaact tttcacttaa       660
     gtggcaaggt taacacacat aactgtagga tttggggcag tgaaaatcca catgaaacat       720
     tgcaacatgc tcgtgatagc cctaaggtga acgttttttg tgcgttgagc aagaagaaaa       780
     tgtacggccc cttttttttc caagaacgaa ccatcaacgg gatagtgtac ctggatatgt       840
     tgcaacaatt tttgatacca cagatcgatg acgacggaga acgaaatgtt tacttcatgc       900
     aagacggcgc accaccacac tatctgactg acgtccggga ttttctcaat gaccgttttc       960
     caggtaaatg gattggccgt gctgcgccaa ttgcatggcc tgcccgttcc ccagacctga      1020
     caccgctaga ctttttcttc tggggcttca tcaaagatat ggtgtacgta cctcctttgc      1080
     cggccactct accggaactt agagcaagaa tctacgccgc cgctgagcaa gttacacctg      1140
     caatgctgat gcgagtttgg gaagaaatca gttaccgatg ggatgtctgc aggataacca      1200
     acggaagcca catcgaacac ttttagttta aggtaaaaac ttgatgtgtt ttcctttgaa      1260
     acaacactaa aaccagctct gtacctcttt ttaataaatt aatatgaatt ttcaaagttg      1320
     taaagtccct tttgaaacac cctg                                             1344
//
ID   Mariner-29_RPr repbase;    DNA;    INV; 1649 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-29_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1649
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3276-3276 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           513..1214
FT                 /product="Mariner-29_RPr_1p"
FT                 /translation="MNRPYSKNEKTDMYDIFVECRRQAQTAARAYQERFPQ
FT                 RRHPSRKTIARIATTFRLFGSVIRQGPRNRVRNVRNFDTELDVLLYVQENP
FT                 NTSVRNAARALGISKTVLWEILRHYQMKPFRYHIVQGFREGDQERRLTFLA
FT                 HMSALSEEIPDFLSFILWTDEAKFTNNGVFNRWNFRSWADQNPHLSYQSHH
FT                 QVVISINVWCGLIDNKLIGPYFYEQNLNGENFFKFFVRNTSQAS"
XX
SQ   Sequence 1649 BP; 534 A; 279 C; 287 G; 549 T; 0 other;
     cagggtgtcc gggctaagtt gtccaccccc tttttccggt aattattgat gatggaaaaa        60
     aagttcaaat cgtaacttcc tttatttttt gagtagtatc taatgatatt ataaaaaacg       120
     aaattctgct gctgatatgc aggttagaga tacaaacttt ttttttttca aatgggaacc       180
     cctatttttt attatgaatt ctaaaagtac tttttttttg tgagaaaaac tgtttttgaa       240
     aaattaaaat tgcttttgta gttcccaagt tatgcatttt tgaaaaaaaa aaaattttgt       300
     ttaccgctgt ctgctggcat tttattaaaa aacaataaat aatgattatg gataaagcaa       360
     aagggtctgt ccaaagagca aaaacaaaaa tgcaagatga atgtttacac aaatgctctc       420
     ttgtttactg ttttaatccc ataagttgta aacaatgcct tgtttttaaa attactttca       480
     gtctacctta aacttccatt cgttccggca agatgaaccg tccatattct aaaaacgaaa       540
     aaactgatat gtacgacatt tttgttgaat gccgtcgtca agctcaaaca gctgcaaggg       600
     cttaccagga gagatttcct caacgaagac acccaagccg gaaaacgatt gctcgtattg       660
     ctacaacgtt ccgcttgttt ggtagtgtca ttcgccaagg gccaagaaat agggttagga       720
     atgttcgtaa tttcgatact gagcttgatg tattactcta tgtgcaagag aatcctaaca       780
     cttcagttcg aaatgcggct agagctctgg gaattagtaa aactgtcttg tgggaaatac       840
     tccggcacta tcaaatgaag ccatttaggt accacattgt tcaggggttt cgtgaagggg       900
     atcaagagcg ccgacttact tttttggctc atatgagtgc attgtcggag gaaattccag       960
     attttttatc ttttatttta tggaccgacg aggcaaaatt taccaacaac ggtgttttta      1020
     ataggtggaa tttccgttcg tgggctgacc aaaatcccca tctatcttat cagtcccatc      1080
     atcaagttgt tataagcata aatgtatggt gtggattgat tgacaataaa ttaatcggcc      1140
     catactttta tgaacaaaat cttaatggag agaatttttt taaatttttt gtcagaaaca      1200
     cttcccaagc ttcttgaaga tttacaaaca agagagcatt tgtgtaaaca ttcatcttgc      1260
     atttttgttt ttgctctttg gacagaccct tttgctttat ccataatcat tattattgtt      1320
     ttttaataaa atgccagcag acagcggtaa aaaaaatttg tttttttcaa aaatgcataa      1380
     cttgggaact acaaaagcaa ttttaatttt tcaaaaacag tttttctcac aaaaaaaagt      1440
     acttttagaa ttcataataa aaaatagggg ttcccatttt ggaaaaaaaa agtttgtatc      1500
     tctaacctgc atatcagcag cagaatttcg ttttttataa tatcattaga tactactcaa      1560
     aaaataaagg aagttacgat ttgaactttt tttccatcat caataattac cgagaaaaag      1620
     ggggtggaca acttagcccg gacaccctg                                        1649
//
ID   Mariner-29_SIn repbase;    DNA;    INV; 912 BP.
XX
AC   .
XX
DT   18-APR-2012 (Rel. 19.02, Created)
DT   18-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-29_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-912
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 393-393 (2014).
XX
DR   [2] (Consensus)
XX
CC   >83% identical to consensus. ~50bp TIR.
XX
SQ   Sequence 912 BP; 291 A; 157 C; 188 G; 276 T; 0 other;
     ccttctgttc aaaaagtact cggaattgtt tatttaaaca aacgattaac cgaaatcgaa        60
     attcttttta ccgctaagtt aacataattg tactcgactt tcatgcggag tttcagtgcg       120
     gtgtatcaat tagtttgttt acggcagctg tttagtcagc ctttggtatt cacggcgatt       180
     tttacgatgt caaaaaatca agaacaaaaa atttgcctca aattttgtgt ttccaacgaa       240
     atttcttgtg ctgaagcgct taaaatgtta aagaaagcct atgggaacaa ttgccttttg       300
     aaaacacaga tgtatgagtg gtataaagca ttcaaagaag gtcgtaaagt ggttgaagat       360
     ttgcctcgtt cggacgccca tcgacatcaa ctaatgatga aaatgtgtga aaaagtgaag       420
     aaactagtgc ttgaaaatcg gcgaataagt gaaagagaga ttgctatgga acttaatatc       480
     tctcgacagg ctcaacacat agcatttggt cgatattttg ggcatgaaaa cgcgtcgcag       540
     cacggcttgt tccaaaagag ctgaatttcg tgcaactttt tggctaaaaa cttactccaa       600
     caaatatcat tcctcaaaca ccgttattcg ccagacttgg ctctctgtaa ctttttccta       660
     ttcctagaac tcaaattacc acttcgtgga aagcgttttg aatcgacaga ggcgttaaag       720
     aaaattcgct gaaggagctg aaggccatat cttcatcggc ttacgaagtg ttttgaagaa       780
     tgggtaaaga gttggcacat tgcgttgcaa agaatgggga ctattttgaa gggaataaaa       840
     ataaatttat ccgattaaat atcaattgtg tgttttattt aacaattccg agtacttttt       900
     gagcagaagg tg                                                           912
//
ID   Mariner-2N1_RPr repbase;    DNA;    INV; 874 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-2N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-874
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3247-3247 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to consensus.
XX
SQ   Sequence 874 BP; 261 A; 167 C; 212 G; 233 T; 1 other;
     cgagggtcat tcaataaata aacagacaaa catatttagt gaaggcgacg cttaatgcag        60
     ggaattgaaa cttttgtaag tgttagttgg caaccttgcg aagagtgtca gtcagctgtt       120
     cgattaatat ttacgtaaac ataaccttta aggtcttagt tacgatggcg tgtccgctcg       180
     aagaaagtta cttttgagaa cagcgttctg tgatccgatt ttttactttc ggaaagtgta       240
     caaccgtcag aaatattctc tcggatgaac aaacaatacg gcagtagttg catgaaccgg       300
     gcgagttttt acgcgtgggt ggaaaagttt aaaagtggcc gcaaaagcgt aagcgacgag       360
     caccgctccg gaagtgccca tggtccgatt ttctgtgatt ttttggagga gcaacgcact       420
     atcaacagcc tatactactc agacatgatt gagaacaaag tcaagcccgc gctgatgagg       480
     aaatgtccgg gatggcagag gaaaggcgtg cttcttcttc aagacaacgc tcgacctcat       540
     acggcacaac tgacgctgga aactattggc aaagtgggtt gggagctcct acctcatcct       600
     ccttacagcc ctgaccttgc cccttcggat ttttatctgt ttggtccgat gaaagaagct       660
     ttgcgtggca tcaagtkcaa ggaaaaagta caaaactggc ttcgagatca aggtaaagaa       720
     ttcttcgctg aggggataag aagactcgta agaagatggg acaagtgcat agaagttggt       780
     gggattcgtg aaaaataaac aaaaaattgt attgatttaa taaaccattt ttgatgtaca       840
     gctatttgtc tgtttaatta ttgaatgacc ctcg                                   874
//
ID   Mariner-2_AAe repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 17.12, Created)
DT   27-NOV-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   Mariner/Tc1 DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1298
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1298
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2468-2468 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1105
FT                 /product="Mariner-2_AAe_1p"
FT                 /translation="MEVNQRESREQILSKHLEFPDLSHRQLGKMLNIHHST
FT                 VSRVLKRFQERLTLDHGKGAGRKPGPENKKTEGKVKRMIKANPNVSSRDLA
FT                 KKIGMSQSYVQNAKKRAGLHTYKVQNFPNRDERQQSTAKTRARKLYEKMLT
FT                 KYGCCVMDDETYIKADFKQIPGLEFFTGKSKFDVDDKFKKKKMSKFASKYL
FT                 IWQAICSCGLRSEPFVTKGTVNGEIYKSECLEKRLLPFLQQHDEAPLFWPD
FT                 LASCHYSKSVLEWYEANSVHFVPKDMNPPNCPELRPVEQYWAIMKRELRKS
FT                 KKTVKDEKDMLRKWKKKLRNWYRMTL"
XX
SQ   Sequence 1298 BP; 410 A; 266 C; 315 G; 307 T; 0 other;
     aagggcgaac acgaaattat tgcgacacat tcaacagggc ataacttttc taccattggg        60
     taaaaatcaa ccaaattttg cacactttct cattgatgtg tattgtttac atgctgtcaa       120
     actcgaagtc gtgtttttcg attcaacgaa aatggaggtg aaccaacgcg agtcgagaga       180
     acaaattctt tccaaacacc tggaatttcc tgacctgtcg caccggcagt tgggaaaaat       240
     gttgaacatt caccattcaa ccgtctccag agtgttgaag cggttccagg agcggttgac       300
     gttggaccac ggcaaaggag ctggaagaaa accgggaccg gagaacaaaa agacggaggg       360
     aaaggtgaag cggatgatta aagcaaatcc caacgtctca agccgtgatt tggctaaaaa       420
     gatcggcatg tcgcagagct acgtccagaa tgcaaagaag agagctggac tacatacata       480
     caaggtacag aacttcccaa accgcgatga gcggcaacaa tcgacggcta aaactcgggc       540
     acggaagctc tacgagaaga tgctgacaaa atatggctgc tgtgtgatgg acgacgaaac       600
     gtatataaaa gccgatttta agcaaattcc ggggttggag tttttcaccg gcaagagcaa       660
     gttcgatgtg gacgacaaat ttaagaagaa gaaaatgtcg aagttcgcct ccaaatatct       720
     catttggcag gccatctgct cttgcggact gaggagtgag cctttcgtga caaagggcac       780
     agtaaatggc gagatctaca aatctgagtg cctcgagaag cgccttttgc cgttcttgca       840
     gcagcacgac gaagctccgc tattttggcc agatttggca tcatgccact attctaaaag       900
     tgtcctggag tggtatgagg ccaattctgt ccattttgtt ccaaaggaca tgaatccgcc       960
     aaactgtccg gagctgcgcc cggtggagca gtactgggca ataatgaagc gggaacttcg      1020
     gaagagcaag aagacagtca aagacgagaa ggacatgtta agaaaatgga aaaaaaaact      1080
     gagaaactgg taccggatga cactgtaaag actttgatgg agggcatcaa gcgaaaatgc      1140
     cttcaatttt acactcaagg ctccatcgat taacttttct tttgattttt gaagtaaata      1200
     tatgtataaa actaccctaa aattttggtt tgattctaaa cattataaga aaattggcat      1260
     gacattttcg gtgtcgcaat aatttcgtgt tcgccctt                              1298
//
ID   Mariner-2_ACe repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 509-509 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1207
FT                 /product="Mariner-2_ACe_1p"
FT                 /translation="MSSFLLKKKHMREALLFCFNLKKSAAESHRMLVEAYG
FT                 DNALSETTCRDWFRRFNDDNFDLSDKKRENRPRKVEDCQLQALLDEDDTQS
FT                 QKMLAEQLGVSQAAISMRLHAMGKVQKIGKWVPHELNDRQMERRQNTCQIL
FT                 LARQKRKSFLHRIVTGDEKWIYFQNPKRKKSWVDPAQPSTSSSRPNRFGRK
FT                 TMLCVWWDQEGVIYYELLKPGETVNAHRYHQQLIKLHRALREKRPHYRKRH
FT                 DKLIFLHDNAPSHTSTMVQNYLETLNWEVLPHPAYSPDLAPSDYHLFSSMG
FT                 HALAERHFDSYEDVRKWLDEWFASKDEEFFWRGIHKLPERWEKCIVSEGKY
FT                 FE"
XX
SQ   Sequence 1286 BP; 374 A; 288 C; 294 G; 330 T; 0 other;
     ccaggtgtat aagcttaaat ccgctgtttg ctcataggtg gcattagtga gcgtacaaag        60
     ctaccctggg cacacaacac actttttttt atgtgtttga catctgtcaa cattaaccag       120
     tgcacatcat cagcaatttc atacaacaac atacattttt tctttcgtaa tcatgtctag       180
     ttttttgcta aaaaaaaagc atatgcggga agctttgctt ttctgtttca atttgaagaa       240
     atcggctgcc gaatcgcatc gaatgcttgt ggaggcctat ggcgacaatg ctttatcgga       300
     aacaacgtgc agagattggt ttcgccggtt caatgacgac aattttgacc tgagtgacaa       360
     gaagcgtgaa aatcggccca ggaaggttga ggactgtcaa ttgcaggctc ttttggacga       420
     ggacgatacc caatcgcaaa aaatgcttgc cgagcaattg ggtgtttctc aagcagccat       480
     ttccatgcgg ctacatgcca tggggaaggt tcaaaagatc ggaaaatggg tgccgcatga       540
     actgaacgat aggcagatgg agcgacgcca aaacacatgc caaattctgc ttgccagaca       600
     aaaaagaaag tcgttcctgc atcggattgt gacaggcgat gaaaagtgga tctattttca       660
     gaatcctaaa cgcaagaaat cttgggttga tcccgcccaa ccatcaacat cttcctcaag       720
     accaaatcgc ttcggacgga agacgatgct gtgcgtttgg tgggatcagg agggtgtcat       780
     ctactacgag ctgttaaaac ctggtgaaac tgttaatgct caccgctacc accaacaact       840
     gatcaaattg caccgtgctc tgcgtgaaaa aaggccgcat tatcggaaaa gacatgacaa       900
     gctgattttc ctccacgaca acgcaccatc gcacacgtca acaatggtcc aaaactactt       960
     ggagacactc aactgggaag tgctacccca tcccgcttac tcaccagacc tggcaccttc      1020
     tgactatcac ctgttttcgt cgatgggcca cgcgctcgct gagcggcact tcgattctta      1080
     cgaagacgtc cgaaaatggc ttgatgagtg gtttgcctcg aaagatgagg aatttttttg      1140
     gcgtggtata cacaaattgc ccgaaagatg ggaaaaatgt atagttagcg agggcaagta      1200
     ctttgaataa atttgttttt gcttcctagg aaaaaaaaat gtgtttttct gactaaaaaa      1260
     cagcggattt aagcttatac acctgg                                           1286
//
ID   Mariner-2_AEc repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 544-544 (2014).
XX
DR   [2] (Consensus)
XX
CC   Present in other hymenopteran species.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-2_AEc_1p"
FT                 /translation="MSNFVPGNYDLRTALIFCYHLKKTAAESHRMLVEAYG
FT                 EYALGKSQCFEWFKKFKSGDFDVRNEERGKPPKKFEDSELQALLDEDDAQT
FT                 QQQLADQLNVTREAVSIRLKSMGKIQKMGKWVPHELNERQQENRKTTCEML
FT                 LARYKRKSFLHRIVTGDEKWIYFENPKRKRSWVTPGEPSTSTARPNRYGRK
FT                 TMLCVWWDQKGVIYYELLKPGETVNTERYRQQMINLNQALREKRPEYQKRQ
FT                 HKVILLHDNAPSHTAKLVKETIEAFGWEILSHAAYSPDLAPSDYYLFASMG
FT                 HALAQQRFTSYEDVRKWLDDWFGSKEQQFFWRGIHKLSDRWEKCIASDGQY
FT                 FE"
XX
SQ   Sequence 1291 BP; 422 A; 252 C; 284 G; 333 T; 0 other;
     taccaggtat gtaaatatga aaccggaatt taccaataga tggccatagc tgtcaatgta        60
     gttgccgtca gaccgcgtca tcgacgccat ttccttgttc tgacatctga caaagatttt       120
     caactcacaa caatacaagt ttcatacaac agtatagttt gtaatagcgt tgaacatgtc       180
     gaattttgtg cctggaaact acgatttgcg gacagcattg attttctgtt accatttgaa       240
     gaaaactgct gcagaatcgc atcgaatgct tgtcgaagct tacggtgagt atgctcttgg       300
     taaatcacag tgctttgagt ggtttaaaaa attcaaaagt ggcgattttg acgtgagaaa       360
     cgaagaacgt ggaaaaccac cgaaaaagtt cgaagacagc gaattgcaag cattgttgga       420
     tgaggatgac gctcaaactc aacaacaact cgcggatcaa ttgaatgtga cacgagaagc       480
     cgtctctata cgtttgaaat ccatgggaaa gatccagaag atgggaaaat gggttccaca       540
     tgaactgaat gaaagacagc aggaaaaccg aaaaaccact tgcgaaatgc tgctcgccag       600
     gtacaaaaga aagtcatttc tccatcgaat tgtgactggc gatgaaaagt ggatatattt       660
     tgagaatcct aagcgtaaaa gatcatgggt aactccaggc gaaccatcga catcgactgc       720
     aaggccaaat cgctatggac ggaagacaat gctctgtgtt tggtgggatc agaaaggtgt       780
     gatctattat gagctgctaa aacctggcga aaccgttaat actgaacgct accgacaaca       840
     aatgatcaat ttgaatcaag ctttgcgtga aaaacgaccg gaatatcaaa aaaggcaaca       900
     caaagtgatt ttgcttcatg ataatgcacc atcacacaca gcaaaactgg tcaaggaaac       960
     gattgaggcg ttcggttggg aaatactttc gcatgcggct tactcaccag acttggctcc      1020
     gtccgattac tacttatttg catcgatggg acacgcactt gctcagcagc gcttcacttc      1080
     ttacgaagat gtacgaaaat ggctagatga ctggtttggc tcaaaagagc aacaattttt      1140
     ttggcgtggc atccacaaat tgtcagacag gtgggaaaaa tgtatagcta gcgatgggca      1200
     atacttcgaa taaaatattt tttatcattt tcatgcaata aacgtgtatt ttctataaaa      1260
     aaattccggt ttcatattta catacctggt a                                     1291
//
ID   Mariner-2_AMel repbase;    DNA;    INV; 1254 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 17.09, Created)
DT   20-JUL-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from Apis mellifera (a consensus).
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   Interspersed repeat; Mariner-2_AMel.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   1-1254
RA   Bao W. and Jurka J.;
RT   "Mariner-type DNA transposon from honeybee.";
RL   Repbase Reports 12(9), 1904-1904 (2012).
XX
DR   [1] (Consensus)
XX
CC   Several full-length copies,  ~86% similar to consensus.
XX
SQ   Sequence 1254 BP; 417 A; 212 C; 249 G; 376 T; 0 other;
     aagggtgtcc caaaattcac gcaagatttg aatcgtcatt tgtgcggtaa agtattgcca        60
     acgaaaaaaa aaaaaacagc gtgacagctg acagtttagg attattaaaa atggaacgct       120
     acacgaaaga acaacgcgtt ttcattgttg agcaatattt taaaaataat gaaggtttgg       180
     cactacagtt cgcaattttc gtacaaaata tgatcggaat agtgatttaa cttcattaac       240
     tgtgaagaga ttaattaaaa aatttaggga gagtgaatca attagtgatc ttaagcactc       300
     tggccgtcct tcgacaagtt caacacaaaa catcgaagca gttcgtgaga gtattgctga       360
     gagtccagga catcaattcg ccatggtcaa gaattggata tttcgagaag ttctctacag       420
     cgtattctca cgaaagattt gcatcttcat gcttacaaag ttcaattgac tcaagaactg       480
     aagcctattg aacagaattc gttgaatgga ttatggaaca acaatagtgg atgctgattt       540
     ttcgaacaaa atcatcttca gcgatgaggc tcattttcat cttgatgaat tggttaatcg       600
     acaaaattgt cgtatttgga gttcagaaaa tccacgagtg attgttgaag aaacaaatgc       660
     atccacaacg tgtcactgtt tgatgcggat tttgggctgg agacataatc ggaccattct       720
     tcttcgaaaa tgcggttgat taggcaataa cagttaataa tgttcgctat catgacatga       780
     taatccagtt tttgtgccta aattgcaaga tatgaatgtg ggcaacatgc ggtttcaaca       840
     agacggtgcc acatgccata tagtccgaga aacaattcaa ttactgcacg agtcatttcc       900
     tgatcgtgta attttggtga tcagaattga ccatctagat cgtgcgattt aacaccgttg       960
     gatttttttg ggggagttta ttgaaggttt atgccgagcc cacgaccatt catgccttga      1020
     aggaggaaat tgagcgctgt atcaatgaaa ttcagccaca tgcaaaacga tcatggaaaa      1080
     tttcaacaaa aaaagagtga tatatgccag caaaacgtgg aggccattta cctgatattc      1140
     catatataac tctatactgt atattttatg aatcaataaa aaatttacaa tttttaatta      1200
     taaacctgta ttttctatca aaattacttc ttgcgtgaat tttgggatat cctt            1254
//
ID   Mariner-2_AP repbase;    DNA;    INV; 2267 BP.
XX
AC   Contig30729;
XX
DT   07-MAR-2008 (Rel. 13.03, Created)
DT   17-MAR-2008 (Rel. 15.12, Last updated, Version 2)
XX
DE   Mariner-type transposable element.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_AP.
XX
NM   Mariner-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2267
RA   Jurka J.;
RT   "Mariner families from Acyrthosiphon pisum.";
RL   Repbase Reports 8(3), 341-341 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(469..1026,1049..1747)
FT                 /product="Mariner-2_AP_1p"
FT                 /translation="MNSDPTKSLRIIRQELSKELGIGATTISTTITEYNNT
FT                 KKVISPCKKRVKTSLLETFEEFERNVVRRHVHSFWFKREIPTVDKIFQVVS
FT                 DDDSLPIISRTNLFRLLKEMDFKYSKRGRNSALTEKPKFCVGVDGFLNNCV
FT                 NTEMRVDIYIIWTRPGLMLVNVPAKHGSILQLNHPETHSYKVCQLVPTPYC
FT                 PEYRFGRWVVPDALLCFESKKNTRDYHDEMNGETFYEWMEGVLPRLKENCV
FT                 IIMDNASYHSVKLDKAPTSQTRKGDIIKWLEDKGEVIDRPMCIPQLLQIVK
FT                 RIKPQHQKYVIDELAKKHNRNILRLPPYHCELNPIELAWSSVKNYVRMNNK
FT                 TYKLHDVKNVLIEGVKRVDADMWKNFISHTKKEEDKFWEIDFVVDEVLSAE
FT                 LESVTLTIGDTSSDDSLGTESDYFF"
XX
SQ   Sequence 2267 BP; 728 A; 381 C; 437 G; 721 T; 0 other;
     ctatactcta ttccacctaa gagtgaacca ctcagccgac caaaactcgt tttgttcgcg        60
     catccccacc acaagacggg cgccgccgcg aacgttggtg tgggtcgtca cgaaactgca       120
     gctgcctacg tagtgagctg tattaacaca ctatcacttg tttgattcca ctcgcgcgca       180
     catgttcact tttgtattta ccgccgtcat ttattagttt agctatcatt ttccgtagtg       240
     aattattttt tttgttcata tattttttat taaataatta ccatggacca agaacaagct       300
     gtaggcaagt ctccagtaaa aaaaaatcca tcaggaaagg taagaacatt ttttcaatga       360
     atgatttttt aatttaatat gctggtttta tcataataat ttttgttaca atttcagaga       420
     gtagattctg gcaagagaca aattataatc aatgcgtaca agtcagaaat gaattccgat       480
     ccaacaaagt ctttaagaat tatccgacaa gaactttcta aagaattggg cattggagca       540
     acgacaattt cgaccacaat tacagaatac aacaacacta aaaaagtaat atctccttgc       600
     aaaaaacgtg ttaaaacatc cttgctcgaa acatttgaag agtttgagag gaatgtggtt       660
     cgtaggcatg tacatagttt ttggttcaaa cgtgaaattc ctacggtcga caaaatattt       720
     caagtagttt ccgatgacga ctctttacct attatttcga ggacaaatct ttttaggctt       780
     ttgaaagaaa tggattttaa gtacagcaaa cgtggtcgaa atagtgcact gactgaaaaa       840
     ccgaaatttt gtgttggcgt agacggtttc ttgaacaatt gcgtgaatac cgaaatgagg       900
     gtcgacattt atattatctg gacgagacct gggttaatgc tggtgaatgt accagcaaaa       960
     catggatcga tactacaatt aaatcacccc gagacgcatt cctacaaggt ctgtcaactg      1020
     gtgccgtaaa tccttcagga aaaggtaaac gccttattgt cctgaatata ggttcggaag      1080
     atgggttgtc cccgacgcat tgttgtgctt cgaatcgaaa aaaaacacta gagattacca      1140
     tgacgaaatg aacggggaga cattttacga atggatggag ggtgtactgc ctcgtttaaa      1200
     agagaactgt gtcatcatca tggacaatgc gtcatatcat tctgtgaagc ttgataaagc      1260
     acctacgtcg caaaccagga aaggtgatat aataaaatgg ctggaggata aaggcgaggt      1320
     tatagacaga cctatgtgta taccacaact tcttcaaatt gtgaaaagga tcaagccaca      1380
     acaccagaaa tacgtaattg acgaattggc aaaaaaacat aaccgtaata tactaagact      1440
     acctccatat cactgtgagc tcaatccaat agagttggct tggtcatccg ttaaaaatta      1500
     cgtacggatg aacaataaga cctataaatt acacgatgtc aaaaatgtat taattgaggg      1560
     cgtcaaacgc gtggatgcag acatgtggaa gaattttatt agtcacacga agaaagaaga      1620
     ggataaattt tgggaaatcg acttcgtcgt agatgaagta ttgtctgcag agttggagtc      1680
     agtaactttg acaatcggag atacatcatc agacgactcc ctcggcactg aatctgacta      1740
     ttttttttaa atttttattc tattatattg acgtgtgtat ttttttattt tttttatttg      1800
     tattttatta tattgactta tgtatttttt aaatattgta tttgtattat attatattga      1860
     cgtgtgtatt tttaaaatat tatattttta ttatattata ttgacgtgta cttttttttt      1920
     atttgtattt ttaaaaaaat tgtttttgtt ttatacctat tatattaaat ttattattta      1980
     agcaataaaa caatttaatt tataatattt tatatttatg tgtttgtata taatatagtt      2040
     tgatttatga tgaaaattca aaataagtgt tgtatagtaa ttaatcgcga aaacagctat      2100
     gtttttatga ttctctgtat gcacggcggt cgacaactta cgacgaccgg cgatgactgt      2160
     cgaccaatga cagaacgcct agccgtcacc aggggggtca gacaatgatc ggcggctcag      2220
     tctgcgtgcg cgaaagcggt tcactcttag gtggaataga gtatagt                    2267
//
ID   Mariner-2_BM repbase;    DNA;    INV; 1278 BP.
XX
AC   .
XX
DT   25-APR-2010 (Rel. 15.07, Created)
DT   25-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1278
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 937-937 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           116..1192
FT                 /product="Mariner-2_BM_1p"
FT                 /translation="MERFTGADRAFCVREFYKNDNSATVARRKFREHKGLH
FT                 NFDDTPTLQTIKNWVAKFEETGSTLDKPRLGRPRTSRTEQNIDTVTQSIRE
FT                 NPTQSTRKRARALNVSRTSLQRILKKDLHMHPYKIQLVQELKETDGIQRQN
FT                 YANEMLNRFTSFNNIMFSDEAHFHLNGHVSKQNCRYWSPINPKLKHQKPLH
FT                 SPKVTVWAAMSAHGILGPYFFEDGRGRAVTVTSERYVAMIEEFFIPELQNF
FT                 SGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLT
FT                 PMEWGYLKAKVYDTNPRSIEALKENIRREMTSISAVTCRAVIDNFRRRLQE
FT                 CRDRNGLHLGDVIFKK"
XX
SQ   Sequence 1278 BP; 379 A; 276 C; 297 G; 326 T; 0 other;
     cagggtggcc cataagtcct ttgaaaagta aaatttgaat aaaacgaaca gggcgcgcgt        60
     gagcggtgca ggggaagcgg ggggagtaac ttcggtttct gggaatttag tcgcgatgga       120
     gcgttttacc ggagcggacc gtgcgttttg tgtgcgcgag ttttataaaa acgacaattc       180
     ggcaaccgtt gcgcggcgta aatttcgaga acacaaaggt ttacacaact ttgacgacac       240
     tccaactctt caaacgatta agaactgggt tgctaagttc gaggagaccg gttcgacgtt       300
     agataaaccg cggttgggtc gcccaaggac gtcacgtacg gaacaaaaca tagacacagt       360
     gacacagtct attcgcgaaa atccgacaca gtcaactcgt aagcgcgcca gagcattaaa       420
     cgtatccagg acatcgttac aacggatttt gaagaaagat ttacatatgc acccttacaa       480
     aattcagttg gttcaagaat taaaggaaac tgacggtatt caaagacaaa attatgcgaa       540
     tgaaatgttg aatcggttta cttccttcaa taacataatg ttctctgacg aggctcattt       600
     ccatcttaac gggcatgtta gtaaacaaaa ttgccgctat tggagcccca tcaatccaaa       660
     acttaagcat cagaagccct tacatagtcc gaaagtgact gtttgggccg ctatgtcagc       720
     ccatggtatc ctagggcctt acttctttga ggatggcaga gggcgcgcag ttactgttac       780
     gtcggagcga tatgtggcta tgatcgaaga gtttttcata ccagaattgc aaaacttttc       840
     aggctttaat gccaggacgt ggtttcaaca ggatggggcc acttctcaca cctctaacac       900
     tgctatgccc gttatccgtc aactttttcc tggcaaagtt atctctaaga gaggagacat       960
     ttcctggcct ccacgtagtc cagatctgac cccgatggag tggggctacc ttaaggctaa      1020
     agtatacgac acaaacccgc ggtcaattga ggccctaaaa gaaaacatcc gcagagaaat      1080
     gacaagcatt tcagcagtga cgtgccgcgc agtcatcgac aattttagac gtcgtttgca      1140
     agagtgccgt gatcgcaacg gattacattt aggagatgtt attttcaaaa aataattccc      1200
     gttttttaag ctttttatgt aaataaaaat ttaattcata atgtaattag catatcaaag      1260
     gacttatggg ccaccctg                                                    1278
//
ID   Mariner-2_CoFl repbase;    DNA;    INV; 929 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-929
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2112-2112 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. TA TSDs. 31-bp TIRs.
XX
SQ   Sequence 929 BP; 292 A; 156 C; 199 G; 282 T; 0 other;
     cgaggtgtga tcaaaaagta aggtgacttt ttgaattgcg cgcgctcttt acactctaag        60
     ttaaaaattt tttttttatt atgttggtac actagtcacg atcatatgtt catagttttg       120
     actatatagc atgtgttgtt tttatgtgag agacttaaag gttagactcg tgtttgcgta       180
     ctcggcgatt tctttttgtt gaaaataatg gagcaaagag tttgtattaa tttttgtgta       240
     aaaaatggta ttaagtgctc aaaaactctt gaaatgttga cagtggccta cggtgagtca       300
     actatgagca aaaaaaatgt ttataagtgg tataagttat tccaagaggg ccgagaaaat       360
     gttaatgatg aacctcgctc tgggcgaccc agcacgtcaa acaccgacga aaatgttcag       420
     aaagtgaaag aaatggtgct aaaagatcgt cgaatcacga ttagagaaat agctgatgat       480
     cttgacatat cgtttggctc atgccaatca attttgacgg atgttttggg tatgagacgt       540
     gtatccgcga acaccatgat aatgcacctg cgcacaagtc gttattagtt agtagttttt       600
     tggccaaaaa cagtacttcc atcatgcctc agccaccata ttcaccagac ttggccccca       660
     gcgacttttt cctcttccca aaattgaaaa agcccatgaa aggacgaaga tttgccacga       720
     ttgaggagat taaggctaca tcgctggagg agctcaaagc aatacccaaa atagcatttc       780
     agaagtgttt tgacgactgg aaaaagcgtt ggcacaagtg cattgtatct gagggggatt       840
     attttgaagg ggataacata gttttagatg aataaataaa tattttttta taaaaatgaa       900
     aagtcacctt actttttgat cacacctcg                                         929
//
ID   Mariner-2_DAn repbase;    DNA;    INV; 2501 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2501
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 258-258 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~90-bp TIRs. TA TSDs.
XX
SQ   Sequence 2501 BP; 867 A; 454 C; 457 G; 723 T; 0 other;
     cagtgtatca cattaatatt cggttttttt tttttgcaac tttaaacgcg aataaaatgt        60
     attatactaa gaaatcacga aattttaaaa atggtatttt aaactttgaa atattgtctt       120
     tacgtaggta tatatatgtt agcactttat taaaaattaa aagaagaatc acaacgaaac       180
     aaaaaaaaag cttgaaaatg gctttacttt aatattcggt atttttataa gtattacgtt       240
     aaaacaatgt ggcaacttca gatccgccaa aaatgggttt ccccgaattg cacacatatg       300
     actggtattc atttcctaca aacaagccaa aaaaaagcta ctacgagcac cgattttcga       360
     gatgggccgc aagggtaaaa atgcatcatt ggagcagcga aatcttgtcc tcaaacttca       420
     cttagagggc aagacctaca aggaaacagc cgaaatgctt gacatgaagc ccaacacagt       480
     cggtgacatc gtccgacgct tcaaaaatga gggaagagtg gctttaataa agcaaaaagg       540
     acagccgaaa aaattgactg atcgagaaga agccgaaata gtcagaaaaa aaaattgtgt       600
     gcgtggagtc cctacgcgcg aaagaagtga aacttcttag cgatattcca aaaaatgcat       660
     attatttcgt ataaaagaaa aatagcggga gggaaaggat aaaattaagg tggagtgacc       720
     aacactttct tcaattcaca ttttataaat ttattataaa gcaaagtcca agttctgctt       780
     tctttcgtgc tcggtattca cgataatatt gtgctctgtt ccctcctctt aaaacaccgg       840
     ctgcactgtc tttttccgct gtaaaatcaa ttcaaaatca aaccattaaa atttttgcca       900
     atccaattga tattaatttc aagatgatat gatccacaag gtgtatctgt tatggacaat       960
     tgaaatattc aagagaaacg taccaccaca taacctggaa tccgctgtgt tatgcgtatt      1020
     ttcactgtca ctcattttat tgtttgtttg aatcactatt cactgtacta atactacaag      1080
     tagtgcgtca atattatata gaacacgaat taattatggg aaacacttta ataacaaaat      1140
     acgagataag aataagaaaa agaattttcg acacatagga cgcttgatgc actcacgcat      1200
     aggcactaat attagtctag gcagctgtta cgcgctacgt gtatcgccat agcagcgcat      1260
     gcgcctggcg ataccttact ctcattcact ctctctctcg cactctatct ttctcttttc      1320
     ctcttctcct tccgagttgc gttaagcgtt caacgctatt ccccctccac tggagcgtta      1380
     aacgtttaac gcaaaatttt ccggcgtcgt ataagaagtt tcacttcaat aaaaaaaaat      1440
     cctcgactta gtgctcctga attgtcggct gaactctttg ccgatcatgg aaaggaagtt      1500
     tcggcgcaaa ctattcggcg taccataaaa aaacaggggt acaacggtag aatcgcccgt      1560
     aaaaaacctt tgctatcgga gcgcaaccga aagttgcgaa aaaactttgc ccaggagtac      1620
     tccaaaaagg acgaaagctg gtgggacgat gtcattttcc ttgacgaaag taaatttaat      1680
     cttttcggga gcgacggcaa gcaaatggta tggcggaaac caaacactga gctgaaaaaa      1740
     aataacctta ggccaacagt taaacacggc gggggaagtg tgatgatttg gggctgcatt      1800
     tccacaaaag gagtgggaaa tttagtattt attgatggga taatgaacca agatcaatac      1860
     ttaaaaattt tgaaagaaaa tttgaagcag tcggcggaga aaatgggcat tgcgaactca      1920
     tttaaattat atcaggacaa tgacccaaag cacaaggcgc ataaagtgaa gtcctggttg      1980
     ctttacaact gcccaaaggt catggaaacg ccgccccaat cacctgatct caatcccata      2040
     gaaaatttgt ggagtgaatt ggaccgccgt gtacaccaaa cgccgatatc ttcaatatcg      2100
     gaattgaaac aacggcttca ggaagaatgg gtcaaaattg gcggcgaata cacaaaaaaa      2160
     attattcgaa atatgccaaa acgattaagc gataccataa aaaataatgg gtatcacact      2220
     aaatattaag ataaatttaa ttttaagata aaatagtttt tttttaggtc tataaggaaa      2280
     taccgaatat taaagtaacg caaattttga gttgtttttc gtttttgttt aattttattt      2340
     ttaatttaaa ataaattcct gtgttatgtt atttctatga ataggtaata aaaaaagctt      2400
     tactttgcta tttaaaattt ttgtttaagt ctttttttta atctctttct tttcatttga      2460
     aattgagaaa gtaaaaaacc gaatattaat gtgattcact g                          2501
//
ID   Mariner-2_DBi repbase;    DNA;    INV; 1319 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.06, Created)
DT   09-MAR-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-2_DBi.
XX
NM   Mariner-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1319
RA   Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 737-737 (2012).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   Highly similar Mariner consensus can be derived from the housefly
CC   DNA (not included in Repbase), suggesting horizontal transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           369..1199
FT                 /product="Mariner-2_DBi_1p"
FT                 /translation="MSPRTSQKRRSQQLGMARSTLQRIFRVDLHLFPYKIQ
FT                 LTQRLLLTNKPRRLESAQRVIEMAEDDDQFWNKIIMSDEAHFTLNGTVNKQ
FT                 NCRIYATENPEKIQEVPLHDEKVTVWCGVSSKTVIGPFFFQNENGHAVTIN
FT                 QERYRDMMTNFVMPIIRRKRMRQFWFQQDGAPPHTSRITIDFXKKLFPGRL
FT                 MSKSGDLDXPPRSPDLTPPDFFLWGYLKSKVYVNKPRTLEELKDNIREEIA
FT                 AIPAEMLAKTMENAAKRAQYAINARGGHLKDIIFKN"
XX
SQ   Sequence 1319 BP; 415 A; 288 C; 285 G; 329 T; 2 other;
     tacagggttg cccatattcg acggacccat ctgacgacgc cataactttt gacagagatg        60
     tcagatcgct taatgacata ccgcgtttga agcgtcagtc caagcagatt tttaccatgg       120
     aacaatacac gccacgcgag cgcccttaaa tagttgaaat ttacattcaa cagaacaagt       180
     caattgtgaa aactcaacgt gcttttaaaa aattaaaaaa tgtgaaaagt gcgccttcta       240
     agaacaccat taagcgttta tacgaaaaat ttacgactgg tgaggctctt tctaatccga       300
     agaggccaaa taaaagtcga ccaaggcgat cggacgagaa tatcgctgcc gtacgagcca       360
     gtgttgagat gtccccaaga acatcccaaa aacgccgttc tcagcagttg ggcatggctc       420
     ggtccacttt acaacggatt tttcgcgttg atttgcattt gttcccgtac aaaattcaat       480
     tgacgcaaag attgttgctt acgaacaagc ctcgtcgatt ggaatcggcc caaagagtca       540
     tcgaaatggc cgaagatgac gatcaatttt ggaacaaaat tatcatgtcc gatgaagccc       600
     atttcacatt gaatgggacc gtaaataagc aaaattgccg tatttacgcc actgaaaatc       660
     ctgagaagat tcaagaagtg cctcttcacg acgaaaaagt cacagtttgg tgcggcgtta       720
     gttcgaaaac ggtcattggg ccgtttttct tccaaaatga aaatggccat gctgttacca       780
     tcaaccagga gcgttatcgc gacatgatga ccaattttgt gatgccaatt attcgtcgaa       840
     agcgtatgag gcagttctgg tttcaacaag acggcgctcc accgcacaca agtcgcataa       900
     caatcgattt tcngaagaaa ttgtttccgg gccgtttgat gtcgaaaagt ggcgatttgg       960
     acnggccacc gcgttcgccc gatttgacgc cgcctgactt cttcttgtgg ggatatttga      1020
     agtcaaaggt ttacgttaac aagccaagga ccctagaaga gctcaaggac aacattcgtg      1080
     aagaaatagc cgctattccg gccgaaatgt tggcgaaaac gatggaaaat gctgcaaaaa      1140
     gggcacaata cgccatcaac gccagaggcg gccatttgaa agatatcata ttcaaaaatt      1200
     gatgtaaaca aatctacttg gaacaaatta aatgattaag attgccaacc gccaaatttt      1260
     tattttttct ttgatttaaa aaaaaaaaca tgggtccgtc gaatatgggc aaccctgta       1319
//
ID   Mariner-2_DBp repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 17.05, Created)
DT   20-DEC-2011 (Rel. 17.05, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1284
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 585-585 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           77..1024
FT                 /product="Mariner-2_DBp_1p"
FT                 /translation="MHLSIACTFLKQIYLHFCDSHQFDICFGMSNNRCAIL
FT                 KLFQQGNRQCDIVRLLGIPKQTVSDAIRRFNELGHEGDRPGRGRPCTANTS
FT                 RIRRXVKKRITRNCRVSVRKIAREIGVNRESVRLIAKNELNLKPYKLQKMH
FT                 LLTDDNKRVRLQRCRQLKRRAAGQKWERILFTDEKIFTIQQAHDHQNDRSR
FT                 SAKAPGTSAIIERRQCEQSLMVWGGICATGKTPLVFIDQGVKINQEVYRRD
FT                 ILETVVLPWAQQHFGDTEWTFQQDSASAHRAKLTQDWCKANFPDFITSSEW
FT                 PPYSPDLNPMDYSVWSILESRACA"
XX
SQ   Sequence 1284 BP; 373 A; 290 C; 286 G; 334 T; 1 other;
     cagggtgaca ataaataacc cggacaaact ttgaagcaat ctatcataaa tttgttatga        60
     tgcagccctt aaataaatgc atttatcgat agcttgtact tttctgaaac aaatatattt       120
     acatttttgt gattcccatc aatttgatat ttgtttcggg atgtctaaca atcgttgtgc       180
     aattttaaaa ctgtttcaac aaggaaatcg ccaatgcgac attgttcgtt tgcttggcat       240
     accaaaacaa acggtctctg acgctatccg gcgatttaat gagcttggcc atgaaggcga       300
     ccgtcccgga cgaggcagac catgtaccgc taacacttcc agaattcgcc ggatngtgaa       360
     aaagcggatc actcggaatt gcagagtctc ggtcagaaaa atagcccgtg aaatcggagt       420
     gaatcgagaa agtgttcggt tgattgcaaa aaatgaactt aatctcaagc cctacaagct       480
     ccaaaaaatg catcttctta cggatgacaa taagcgcgtg agactccaaa gatgccgtca       540
     gctaaagcgt cgggccgcag gtcaaaaatg ggagcgtatt ctcttcacgg acgagaagat       600
     attcaccatc caacaggcgc acgatcacca aaatgacaga agccggtctg ctaaagctcc       660
     aggtacctct gcaataatcg agcgccgtca atgtgagcag tctttaatgg tttggggagg       720
     aatatgcgcc accggcaaaa caccccttgt tttcatcgat caaggggtca aaatcaatca       780
     ggaagtgtac cgccgggaca ttttggaaac tgttgtgctt ccttgggccc agcagcactt       840
     cggtgatacg gagtggacgt ttcaacagga ttcagcgtca gcccatagag ccaaattgac       900
     tcaggactgg tgcaaagcca attttccgga ctttatcaca tccagtgaat ggccacctta       960
     ctcgccagat cttaatccga tggactacag tgtgtggtct attttggagt ccagggcatg      1020
     tgcttaacgc cacataagtt cggagcaatc attgctccga gaacgggatc gattatcgga      1080
     agaagatcct gcggcccatt gcgctaaatt tccagaaacg tttagggctc tgcgtcgcag      1140
     cccaaggaag ccacttcgaa accggctgaa tatatgttaa cacaatacct atttaatagt      1200
     tgtgtatctg cattttttct caaatacagt tccttaaaaa gttatgatca aaaatgtttg      1260
     tccgggttat ttattgtcac cctg                                             1284
//
ID   Mariner-2_DEl repbase;    DNA;    INV; 1262 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1262
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 415-415 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 37-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(162..524,475..1182)
FT                 /product="Mariner-2_DEl_1p"
FT                 /note="transposase."
FT                 /translation="METGKEKIRYILQFFFDKGENASQAAENVNGVYGPNT
FT                 VTANHAQFWFRRFRSGNFDVKDEARCGRPIVKNADKIMEIVESDRHSSSKS
FT                 IAQELNIAQKTVWNHLTKAGYTKKLDVWVPHELQRLDTQKSSMYGCHMSYK
FT                 KNLLDRISICESLLNRNKTDPFLKRMVTGDEKWVTYDNVRRKRSWSKKDEP
FT                 AQAVAKPGLTARKVLLCVWWDWQGIIYYELLPYGQTLNSVLYCQQLDRLKE
FT                 AIAQKRPALANRKGIVFHQDNARPHTSIATRQKLRELGWEVLLHPPYSPDI
FT                 APSYYHLFLSMSNDLDSVKLATREDCENRLAQFFANKDEGFYERGIMKLPS
FT                 KWQSIVEKNGAYLK"
XX
SQ   Sequence 1262 BP; 406 A; 236 C; 287 G; 333 T; 0 other;
     tataaggtca agtaaaaagt aatccattat ttgaacaata gatgacttta gtccgatttg        60
     attttagtag gtggcgttag aaagttgagc tttcgtacta taaaagcttc ttagaaaagt       120
     tttgtgatcg ataacacaaa cgctttgaga gctcgataaa tatggagacc ggcaaagaaa       180
     aaattcgcta tattttacaa tttttctttg acaaaggcga aaacgcaagc caggcagctg       240
     aaaatgtaaa tggagtatat ggccctaata ctgtaactgc caaccatgca caattctggt       300
     ttcgtcgatt tcgttctggg aattttgatg ttaaagatga ggcacgctgc ggaaggccaa       360
     tcgtcaaaaa tgccgacaaa ataatggaaa tcgttgagtc tgaccgtcat tcaagcagta       420
     aatcaattgc ccaggagcta aacattgctc aaaaaacagt ttggaaccat ttaacaaagg       480
     ctggatacac aaaaaagctc gatgtatggg tgccacatga gctataaaaa aaaccttttg       540
     gaccgaattt cgatctgcga atcgctgctg aatcgcaaca aaaccgaccc gtttttgaag       600
     cggatggtga ctggtgatga aaagtgggtc acttacgaca acgtgaggcg aaaacggtcg       660
     tggtcgaaga aggatgagcc ggcccaggcg gtggctaagc caggattgac ggccagaaag       720
     gttttgctgt gtgtttggtg ggattggcaa ggaattatct actatgagct gctcccctat       780
     ggccaaacac ttaattcggt tttgtactgt caacaattgg accgtctgaa ggaagcaatt       840
     gcccagaagc gccccgcttt ggccaatagg aaaggaattg ttttccatca ggacaacgct       900
     agaccacaca cgtcaatagc gactcgccag aagctccgag agcttggatg ggaggttctt       960
     ttgcatccac cttatagccc ggacatcgca ccaagttact accacctttt cctatcaatg      1020
     tcgaacgatt tggatagtgt aaaattagct acaagagagg attgtgaaaa ccgactggct      1080
     cagttttttg caaataagga cgaaggattt tatgagaggg gtatcatgaa attaccatca      1140
     aaatggcaat cgattgtaga aaaaaatggt gcttatttga aataaatcgg ttaattctaa      1200
     ccataaaaaa aagctttgaa tttcatgtac aaataatgga ttacttttta cttgacctta      1260
     ta                                                                     1262
//
ID   Mariner-2_DEr repbase;    DNA;    INV; 1628 BP.
XX
AC   .
XX
DT   14-MAR-2012 (Rel. 17.03, Created)
DT   14-MAR-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila erecta genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DEr.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1628
RA   Jurka J.;
RT   "DNA transposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 294-294 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..1553
FT                 /product="Mariner-2_DEr_1p"
FT                 /translation="MISLDIAFNSYRRVNMEFTNAEIRAILKFSFVKGKSA
FT                 RETFREINGVLGDGTLSLRTAEEWFRRFRAGENDTMDKPAGGRPVTTNTDQ
FT                 IMEYIELDRHVASRDIAQEMGVSHQTILNHLQKAGYKKKLDVWVPHDLTQK
FT                 NLLDRINACDMLLKRNELDPFLKRMVTGDEKWITYDNIKRKRSWSKAGESS
FT                 QTVAGGRPVTTNTDQIMEYIELDRHVASRDIAQEMGVSHQTILNHLQKAGY
FT                 KKKLDVWVPHDLTQKNLLDRINACDMLLKRNELDPFLKRMVTGDEKWITYD
FT                 NIKRKRSWSKAGESSQTVAKPGLTARKVLLCVWWDWKGIIHYELLPYGQTL
FT                 NSTIYCEQLDRLKQAIDQKRPELANRKGVVFHQDNARPHTSLMTRQKLREL
FT                 GWEVLSHPPYSPDIAPSDYHLFLSMANALGGVKLNSKEACEKWLSEFFANK
FT                 EGGFYEGGIMKLPSRWKQIIEQNGAYLN"
XX
SQ   Sequence 1628 BP; 485 A; 358 C; 415 G; 370 T; 0 other;
     ttggcaaata tctcccttcc gcctttttgt cttttgaatt tcgcggctat gtacaaagcg        60
     ctacagagct cgtatctggc aatactatac ataatttgaa aggtcttgac ataacctaca       120
     aaacgacgct atgcatgatt agtttggata ttgcgttcaa cagttataga cgtgtaaaca       180
     tggagttcac taacgccgaa attcgcgcta ttttaaagtt ttccttcgtt aaaggcaaat       240
     ccgctagaga aacgttccgt gagattaatg gtgttttggg ggatggtact ctatcacttc       300
     gaaccgcgga ggaatggttt cgacgattca gagccggtga aaacgacacc atggataagc       360
     cagccggcgg aagacctgtg acgacaaata ccgatcaaat catggaatac atcgagttag       420
     accggcatgt ggcatctcgt gacatcgccc aggagatggg agttagtcac caaaccattt       480
     taaaccatct gcagaaggct ggatacaaaa aaaagcttga tgtttgggtg ccgcatgatt       540
     tgacgcaaaa aaaccttctg gaccgaatca acgcctgcga tatgctgctg aaacggaacg       600
     aactcgaccc attcttgaag cggatggtga ctggcgacga aaaatggatc acatacgaca       660
     atatcaagcg aaaacggtcg tggtcgaagg ccggtgaatc gtcccaaaca gtggccggcg       720
     gaagacctgt gacgacaaat accgatcaaa tcatggaata catcgagtta gaccggcatg       780
     tggcatctcg tgacatcgcc caggagatgg gagttagtca ccaaaccatt ttaaaccatc       840
     tgcagaaggc tggatacaaa aaaaagcttg atgtttgggt gccgcatgat ttgacgcaaa       900
     aaaaccttct ggaccgaatc aacgcctgcg atatgctgct gaaacggaac gaactcgacc       960
     cattcttgaa gcggatggtg actggcgacg aaaaatggat cacatacgac aatatcaagc      1020
     gaaaacggtc gtggtcgaag gccggtgaat cgtcccaaac agtggccaag ccgggattga      1080
     cggccaggaa ggttttgctg tgtgtttggt gggattggaa gggaatcatc cactatgagc      1140
     tgctcccata tggccagacg cttaattcta ccatctactg cgaacaactg gaccgcttga      1200
     agcaggcgat cgaccagaag cgtccagaat tggccaacag gaagggtgta gtgttccacc      1260
     aggacaacgc cagaccacac acttcgttga tgactcgtca gaagctacgg gagctcggat      1320
     gggaggtttt atcgcatcca ccatatagcc cggacatagc gccaagtgat taccacctgt      1380
     tcctgtccat ggcgaatgcc cttggtggtg taaagttgaa ctcaaaagag gcttgtgaaa      1440
     agtggctgtc cgagttcttc gcaaataagg aggggggctt ctacgaggga ggtattatga      1500
     agttgccgtc tagatggaaa cagattatcg aacaaaacgg cgcatatttg aactaaatcc      1560
     gatcactgta acacttttta taaagcattg aataaagagc aaaaaagcgg aagggagata      1620
     tttgccaa                                                               1628
//
ID   Mariner-2_DEu repbase;    DNA;    INV; 1670 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.06, Created)
DT   21-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1670
RA   Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 754-754 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to  consensus. Low-copy.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(300..854,858..1214)
FT                 /product="Mariner-2_DEu_1p"
FT                 /translation="RLPTVLASKKRNFGLFLPQYSAPFSIRATFSPDFVFI
FT                 ARFLTRLSSSFAQIFNGIEEDAAEYVGRYVRPTYAHHKPFKGASSLESAKH
FT                 TGRPKALTAREQAHITKMVKVDPKISSTQIAAEVKKKFGKEIHPITVRGTL
FT                 HQANYNSRVARRKPVISKXNQKKRLDYAKEYLKKPXDFWNNVIFSDSKIKI
FT                 FQSDGGQRVWRKPNTELQKNNLVSTVKHGGGGVVVWGCMSASGVGELEFIE
FT                 GIMDKKYYLDILKRNLKKSAEKLNLPPSFSFQHDNDPKHTAYDVRMWVAHN
FT                 VQHTLPHPPQSH"
XX
SQ   Sequence 1670 BP; 561 A; 295 C; 330 G; 481 T; 3 other;
     tacagtgccg aactaaattn ttggcacaga aggcttcatg aactttaggg cacgatttct        60
     ccccttaaaa tttagatatt taaataaaca aaaatttata catataatgt tataaaaaca       120
     taacacgaca aagtttattt caacttttta ccttcaatgg ttgattttta aaaattaaat       180
     aacataaata agaggtgaat ttgcctgaac aaaattattg gcacacttat tgaaaaactt       240
     aaaaataaat gaaaataact aaaattaata ctttgtgggt aagccatttt gttttataaa       300
     ggcttccaac cgtcttggca tcgaagaaac gaaattttgg gttgtttctg ccccaatatt       360
     ctgccccttt ttctattaga gccaccttca gcccggactt tgtttttatc gcgcgttttt       420
     taacgcgcct gtccagctcc ttcgcacaaa tcttcaatgg gattgaggag gatgcggcag       480
     agtatgttgg acgttatgtg cgacccacat acgcacatca taagccgttt aagggagctt       540
     cttctttgga aagcgcaaaa cacaccggac gacccaaggc tttgaccgcc cgggaacagg       600
     cccacattac gaaaatggtg aaggtggacc caaaaatttc ttcaactcag atcgcagcag       660
     aagttaaaaa aaagtttgga aaagaaattc atccaataac ggtgcgaggg acccttcatc       720
     aggcaaatta taatagccga gtggctagaa gaaagccagt tatatcaaaa gngaatcaga       780
     agaagcgatt agactatgcg aaagaatatt tgaagaagcc aatngatttt tggaacaacg       840
     taatattttc ggattaaagc aaaatcaaaa ttttccaatc tgatggcggg caacgcgttt       900
     ggagaaaacc gaatactgag ctgcagaaaa ataaccttgt atcgacggtg aaacatggtg       960
     gtggaggcgt tgttgtgtgg ggctgcatgt ccgcttcagg ggtcggcgaa ctggagttta      1020
     tagaaggcat catggacaaa aaatattatt tagatatttt aaaaagaaat ttaaaaaaaa      1080
     gtgccgaaaa gttgaacttg ccaccatcat tctcatttca gcatgataat gacccaaagc      1140
     atacggctta tgatgtgcgt atgtgggtcg cacataacgt ccaacatact ctgccgcatc      1200
     ctcctcaatc ccattgaaga tttgtgggaa ggagctggac aggcgcgtta aaaaacgcgc      1260
     gataaaaaca aagtccgggc tgaaggtggc tctaatagaa aaaggggcag aatattgggg      1320
     cagaaacaac ccaaaatttc gtttcttcga tgccaagacg gttggaagcc tttataaaac      1380
     aaaatggctt acccacaaag tattaatttt agttattttc atttattttt aagtttttca      1440
     ataagtgtgc caaaaatttt gttcaggcaa attcacctct tatttatgtt atttaatttt      1500
     taaaaatcaa ccattgaagg taaaaagttg aaataaactt tgtcgtgtta tgtttttata      1560
     acattatatg tataaatttt ggtttattta aatatctcaa ttttaagggg agaaatcgtg      1620
     ccctaaagtt catgaagcct tctgtgccaa aaatttagtt cggcactgta                 1670
//
ID   Mariner-2_DF repbase;    DNA;    INV; 1325 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   26-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1325
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 769-769 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..1174
FT                 /product="Mariner-2_DF_1p"
FT                 /translation="MDQRTCIKFCVKNEIKCVDAFRMLTVAYGEATLDRSN
FT                 VYRWYKMFSEGREDVNDEERAGRPSTSTTDEKINEVEKMVLANRRITVREV
FT                 AEDLNISIGSCHSIFINDLGMRRVAAKFVPKLLNCDQKQHRMNIANEMLNS
FT                 VRDDPNLLQRVITGDESWVYGYDVETKAQSSQWKLPHEPRPKKARQVRSNV
FT                 KVLLTVFFDCRGVVHHEFLPQGRTVNKEYYLQVMRNLREAIRQKRPDLWKN
FT                 KNWLLHHDNAPAHTSLLVRDFLAKNNTLMMPQPPYSPDLAPCDFFLFPKLK
FT                 RPMKGRRYATLDEIKTASKEELNKIKKMIF"
XX
SQ   Sequence 1325 BP; 398 A; 272 C; 308 G; 347 T; 0 other;
     tacgaggtgt gttcaaaaag tatcgcgaat tttgaatttt cgcgggttac ctcgtatcga        60
     atttcgattt ttttgtggcg ttatgttggt actcatgtct ctcacttatg ccgacaagct       120
     cggccatttt gaatgttcac ttaattgttg acagctgctt tgcttgcacg tgttttggat       180
     cgtcttcgat ttttacctat tcaaaaaaat ggatcaaaga acctgtatca aattttgtgt       240
     gaaaaacgaa attaagtgcg tggatgcatt ccgaatgttg actgtggcat acggagaagc       300
     taccttggac cgaagcaacg tttatcggtg gtacaaaatg ttctcagaag gccgagaaga       360
     tgtgaacgac gaagagcgtg ccggacgccc gagcacttca acaacagacg aaaaaattaa       420
     tgaagtggag aaaatggtat tggccaatcg tcgaatcacc gttagagaag ttgctgagga       480
     cctaaacata tcgattggct cgtgccattc gatttttatc aatgatttgg gcatgagacg       540
     ggtcgccgcg aaattcgtac caaaattgct caattgcgac caaaaacagc atcgcatgaa       600
     cattgctaat gagatgttaa actctgtccg cgacgaccca aatttgctcc agagggtcat       660
     aactggtgac gaatcgtggg tttatggtta cgacgtggaa accaaagctc aatcatctca       720
     atggaagctg ccgcacgaac caagaccgaa aaaagcgcgc caagttcggt cgaatgtgaa       780
     agttttgctg acagttttct tcgattgcag gggcgtggtg catcatgagt tcttgccaca       840
     gggaagaacg gtcaataagg aatattacct gcaagttatg cgcaatttgc gcgaagcaat       900
     ccgccagaaa cgcccggatt tgtggaagaa caaaaattgg cttttgcacc acgataacgc       960
     ccctgctcac acatcgttgc ttgtgcgcga ctttttggcc aaaaacaaca cactaatgat      1020
     gccgcagcca ccgtattccc cagatctggc cccctgtgac tttttcttgt ttcctaaact      1080
     gaagaggccc atgaaaggac gacgttacgc tacgcttgac gagataaaga cggcatcgaa      1140
     ggaggagctg aacaagataa aaaaaatgat tttttgaagt gcttcgaaga ttggaaaaac      1200
     cgttggcaca agtgcataat atctcatggg gattactttg aaggggacaa aatagatatt      1260
     catgaataaa taaataattt ttgaaaaaac acaaaattcg cgatactttt tgaacacacc      1320
     tcgta                                                                  1325
//
ID   Mariner-2_DHyd repbase;    DNA;    INV; 1730 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila hydei genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-1730
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2450-2450 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. TA TSDs. 234-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           402..1433
FT                 /product="Mariner-2_DHyd_1p"
FT                 /note="transposase."
FT                 /translation="MPGKRLSFDVVQLIFYNRQLGKSVPELVEMFSVSRKT
FT                 IYNVLSRAENEGRLEAKGVGGRKKKISDRASRLMMRKIKSNPQISTRTLAK
FT                 ELKEECGVDVSHETIRQAILRHGYSSKVARKKPLLSSTNVEKRFCFALTML
FT                 RHPEEYWKDVIFCDETKIMLYYNEGPPKVWRKVSKAYDKANIIPTVKFGKL
FT                 SVMVWACISSQGVGDLVFIENTMNAEQYFQILKTNLHQSATKFGFISENRP
FT                 TFKFYQDNDPKHKEYNVRNWLLYNCGKVLDTPPQSPDLNPIEHAWSYLKKK
FT                 VGKRNPTNRGQLKAFVLEEWQKIPLEYIQNLVNSMKRRLQHVQNAKGGHTK
FT                 Y"
XX
SQ   Sequence 1730 BP; 594 A; 288 C; 318 G; 530 T; 0 other;
     cagtctgtca agaaacactt tacacagtgg aaaaaatctc aattttttga ctttatgtaa        60
     aaaaataaag agtttttgtt taatttaact aatttttttt aatggttaac tgtttaatag       120
     gtatttttaa atcaaattat agaaaacaga aacaaaaaca ataatggtga aacttaaaaa       180
     acaacaaaaa cttagattac tcatatttta cactgtcaag aaactcttta cacattttgt       240
     tctcttcatc tgttttgctc tgattctaag aaataacggg gctttaccgt taactatgcc       300
     tttagaatct gtctatgcat ctctattttt gtgtttattt ttcactttgt gcgaaatttg       360
     gctgagtaca catataaaag caatacaaat tttgattaat aatgcccgga aagagattaa       420
     gcttcgatgt tgtccaattg atcttctaca atcggcagtt gggcaaatca gttccagaat       480
     tagtggaaat gttttctgtg tcaagaaaaa ccatatacaa cgttctcagt cgcgcggaaa       540
     atgagggaag acttgaggca aagggtgtgg gtggccgaaa aaaaaagata tctgatcggg       600
     caagccgcct tatgatgcga aagatcaaat caaatcccca aatctcgacc agaactcttg       660
     ccaaggagct caaagaagag tgtggtgtgg atgtgtccca cgaaacgatc cgtcaggcta       720
     ttctacggca tgggtattct tcgaaagtgg cacgtaagaa acccttgctg tcgtcgacaa       780
     atgtggaaaa gcgcttctgt tttgctctta ctatgcttag gcacccagag gagtattgga       840
     aggacgttat attttgcgac gagaccaaaa taatgttgta ttacaacgaa ggtccgccca       900
     aagtatggcg aaaggtctct aaagcttacg acaaagcgaa tatcattcca acagtcaaat       960
     ttggaaagct gtcggttatg gtttgggcct gcatttccag ccaaggagtc ggtgatttgg      1020
     tattcattga aaacacaatg aatgccgagc aatattttca aattttgaag acaaatttac      1080
     accaaagcgc aaccaaattt ggctttatta gtgaaaatcg gccaactttt aaattttacc      1140
     aagacaacga tccaaaacat aaggagtata atgtacgtaa ttggttgctt tacaactgcg      1200
     gaaaggtctt ggatacacca ccccaaagcc cagatctcaa cccaatcgaa catgcgtggt      1260
     cttatttaaa gaaaaaggtt ggaaaaagga atccaaccaa ccgtggacag ctaaaagctt      1320
     tcgtactgga agagtggcag aagatacccc tagagtatat tcaaaacttg gtcaactcaa      1380
     tgaaaagaag actccaacat gtacagaatg ctaagggggg ccatactaaa tattaagtat      1440
     ttcaaaatta gttataatta gttttacatt ttaaatttag aacaatatat aagaagtgtg      1500
     taaagagttt cttgacagtg taaaatatga gtaatctaag tttttgttgt tttttaagtt      1560
     tcaccattat tgtttttgtt tctgttttct ataatttgat ttaaaaatac ctattaaaca      1620
     gttaaccatt aaaaaaaatt agttaaatta aacaaaaact ctttattttt ttacataaag      1680
     tcaaaaaatt gagatttttt ccactgtgta aagtgtttct tgacagactg                 1730
//
ID   Mariner-2_DK repbase;    DNA;    INV; 1649 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1649
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1195-1195 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 30-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           687..1349
FT                 /product="Mariner-2_DK_1p"
FT                 /note="transposase."
FT                 /translation="MRKKNITMRQTFARDHKDWVGCIGEKKWRNILWSDET
FT                 KINLFGNDCERNVRRPNGKEFHPRFTKKTVKHGGGNIMVWGCFSWYGVGPI
FT                 YQTTNRMTAEEYKSILETVMVPYAEENMPLRWVFQQDNDPKHTSRLLSKFF
FT                 EDQKVDVLKWPSQSPDLNPIENLWGDLKKKLAKYSFSNKAQLWDGVQKLWY
FT                 ETPVETCQALIKSMPKRIAVVTKNRGGYTGY"
XX
SQ   Sequence 1649 BP; 611 A; 259 C; 305 G; 474 T; 0 other;
     cacacctgat catattaata ggtacataca caaattattt aattatagat ggttttttcg        60
     tactttaagt gttgacatct ttaaaatttt tggttatttg ttatggtcta tatctggcca       120
     aactgtgaca aagagttgaa cgaggggaat ccccgaatat caaagctttt ctataaattg       180
     tgagtcaacc acacatttcg cctgatcata ataataggta cagtctccgt ttctcataaa       240
     taacaagtga ataattttgt aatcagtgat tttttggcaa cttaaggtaa atttcgtata       300
     gctactatca attaagagaa ttaaatattt atttttttag aaaaaatggg tcgaaattct       360
     cattgtacta aagaagaagc tcgattggtt cttagtctga gaaaagatgg caaatcttta       420
     cgagctattg ccaaattaat gaaaaggtcc cataattttg ttaaaaatgc aattagaaag       480
     gaaaccaaga caggaatccc gtggaaggcc aaaaaaaaac aacggaaacg cttgaccact       540
     acatagtatc tttaagcaaa aaggacccat ttaagtcatc gaaggctatt gcagcagata       600
     ttgggaattc agttagtgct ccaactatcc gaagacgact acaagatgcc aacctaccag       660
     gaagaattgc cagaaaggtt ccacttatgc gcaaaaaaaa tatcaccatg aggcaaactt       720
     ttgcaaggga ccacaaagac tgggtaggat gcatcgggga gaaaaagtgg agaaacattt       780
     tatggagcga tgaaaccaag ataaatttat ttgggaatga ttgtgaaagg aatgttcgac       840
     gccctaatgg aaaggaattt catccacggt ttacaaagaa aacagtcaaa catggaggtg       900
     gtaatataat ggtatggggt tgcttctcct ggtatggcgt aggtccaatt tatcagacta       960
     cgaacagaat gactgctgaa gaatacaaat ccatattgga aacagttatg gtaccatatg      1020
     ctgaagaaaa tatgccatta cgttgggtat ttcagcaaga caatgatcct aagcatacat      1080
     caaggctttt atctaaattc tttgaggacc aaaaagttga cgttctgaag tggccaagcc      1140
     aatcccccga cctaaacccc atagaaaact tgtggggaga cttaaaaaag aaattggcaa      1200
     agtattcatt ttcaaataaa gcacaattat gggatggtgt ccaaaaattg tggtatgaaa      1260
     caccagtaga aacctgccag gctcttatta aaagtatgcc aaaaagaata gcagtagtga      1320
     ccaaaaatag aggtggatac actggatact aagttagtaa atacaaattt agaaaaaaaa      1380
     aacgcaaaat atatatttaa atttattttt ctcatcaaca cttgaagtgt acctattatt      1440
     ttaatcagac tgaaaacgta tctaagacac aaaatgatct cctttttgtt atattattat      1500
     cctatgttac aatgaagttt atttgattaa aaacaaatag tttaagaacc aatgagacca      1560
     aattttaagt ttaaaataat gaataaaact attttctgta accttaaagt ctgagttgat      1620
     gtatgtacct attaatatga tcaggtgtg                                        1649
//
ID   Mariner-2_DMac repbase;    DNA;    INV; 459 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_DMac.
XX
OS   Drosophila maculifrons
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   guarani group; guaramunu subgroup.
XX
RN   [1]
RP   1-459
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with less than eight percent divergent.
CC   Dmacul2cons.
XX
SQ   Sequence 459 BP; 117 A; 111 C; 114 G; 117 T; 0 other;
     tttgggtccc gcatgagttg acgcatacaa atctcttgga ccgcatcaac gcttgcgatt        60
     ctctgctaaa acggaacgaa cttgacccat ttttgaagcg gatggtgact ggtgatgaaa       120
     agtggatcac gtacgacaac gctaagcgaa aaatatcgtc gtcgagaagc ggcgagccgg       180
     ctaaaccatc gccaggaaag ttttgctgtg tgtttggtcg gattggaagg gaattatcca       240
     ctatgagctg ctcagttatg gccagacact taatttggtc ctctactttt tgctaccgtt       300
     tgaagcaggc aattgaccag aattggccaa tttgaatggt gttgtgttcc attaggacaa       360
     cgctcgtcct tacacatctt tgatgacccg ccaaaagcta cgggagctcg gatgggatgt       420
     cctatcgcac ccaccgtact caccagacct agccccaag                              459
//
ID   Mariner-2_DMo repbase;    DNA;    INV; 1686 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   01-JAN-2022 (Rel. 27.01, Last updated, Version 2)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DMo.
XX
NM   Mariner-2_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1686
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1686 BP; 584 A; 272 C; 316 G; 514 T; 0 other;
     cagtttggca agaaagtgtt tacacacagg gaaaaaattt gaatttttta ctttgaagcg        60
     aaataaaagc agtaagaata tgcatattca atttttttaa aatgaaagta ggtatattag       120
     actataaact atattagtaa gtaaaaaaaa ttacaatatg tttccattaa caaaagaaaa       180
     taacaaaaaa caaaagaagt aacaaaaatc agctgacaag aaagtgttta cacaactaaa       240
     acaattaatt cattataatg ttttaactac tttttagtta aaactaatac tttttttggc       300
     caccgttggc atctatgact gctcccaagc gtctattcat cgattggacc aagtttctga       360
     catattccac tgggatattt cgccattcct ccaaaacaat ggttttcagc ccagttttat       420
     tctttggatg tctcttggtg ggtaaaactg ccacagagat tggccaaatg tttttgattt       480
     tttggaaaac agtatataat atactaagcc gtgcaaaaaa agaggatagg cttgagttaa       540
     aggttaaagg ttaaagttaa aggacaccct catctattat cacccagggc agagcgaatt       600
     atgctcagaa aaatggacga gaaaccaact attttgacca ggatggttgc cagtgagctg       660
     aaggaggagt gtagcataac catttcccgg gaaagtgtca gaagagcact aaaaagtaat       720
     gatctgtcgt cccgactagc ccggaaaaaa aaactgatgt cggcagatca cgctcaaaag       780
     cgtctaacgt ttgctaaaat gcacggaaat cagccagatt catatcggga tgatgtaata       840
     ttttgcgatg aatccaaaat gatggtatat tataacaatg gtccaactag agagtggggc       900
     aagcccctaa aagccctcga gaagaaaaat ataataccga ctgttgattt tgggggtgca       960
     tctcaagcaa agcagttgga tatctatgtt ttattgagaa caccatggat gttggacagt      1020
     attttgacat tttgcgcaca catttagtaa ccagtgccaa caaatttgga ttctttgtca      1080
     atggcaaacc aactataagg ttttatcaag acaatgatcc caaacataag gcgcatattg      1140
     tgaggtgctg gctactttat aactgaaaaa atgtgttgga tacgcaaact aaaggcccgg      1200
     acttaagcct cattgagaat ttgtgggctt atctgaagaa gaggaccgcc aagaggcatc      1260
     caaagaataa aactgagctg aaaaccattg ttttggagga atggcgaaat atcccagtgg      1320
     aatatgtcag aaacttggtc caatcgatga atagacgctt gggagcagtc atagatgcca      1380
     acggtggcca aaaaaagtat tagttttaac taaaaagtag ttaaaacatt ataatgaatt      1440
     aattgtttta gttgtgtaaa cactttcttg tcagctgatt tttgttactt cttttgtttt      1500
     ttgttatttt cttttgttaa tggaaacata ttgtaatttt ttttacttac taatatagtt      1560
     tatagtctaa tatacctact ttcattttaa aaaaattgaa tatgcatatt cttactgctt      1620
     ttatttcgct tcaaagtaaa aaattcaaat tttttccctg tgtgtaaaca ctttcttgcc      1680
     aaactg                                                                 1686
//
ID   Mariner-2_DRh repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.08, Created)
DT   03-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1639
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1396-1396 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..1338
FT                 /product="Mariner-2_DRh_1p"
FT                 /translation="MGRKKHCTLEEKKIALNLQREGKSLREIATSPGRSVC
FT                 FIQNALKSKDPTEKRGRKKKSSQTTDTRIVSLAKKDPFMSSKSTAAEIGNE
FT                 ISSRTVRRRLKSAGLTGHIARKVPLLRKKNLQMRRQFAQNHLAWSGPEGSK
FT                 KWNNVLWSDESKINLFGNDSRRYVRRPKGKEFDPRYTKKTVKHGGGCIMVW
FT                 GCFSWHGVGPIHRIADIMTRFGYKSILADVMLPYSEENMPLRWVFQQDNDP
FT                 KHTSKLVKAWFTENEVNLMSWPSQSPDLNPIESLWEHLKRRIGTNTFRNAA
FT                 ELWTFVQKTWYDIPMDTSSKLIASMPKRIAKVVQXKGGYTGY"
XX
SQ   Sequence 1639 BP; 549 A; 287 C; 336 G; 465 T; 2 other;
     tacactactg gccaaaataa taagtacata ggtanaggta tcatttcttg agacatagct        60
     cgaaagctat cgaatgcagg gctgctagtt gattatattt tgaaaggtta ttgtgttgta       120
     aaacatttaa atcaaaaatg aaaatgggga accccattta tccagtgcta agcctaaatt       180
     tgttctggat ggtcgttttc ggtctggtca aaataataag tacacttcca ttattcacaa       240
     atttgaaagg attaagttta gaattggact acggtatgtt gatttttaat gatttcttgc       300
     attttaagta tattcgggtt acaaaaaatt ctttagatgg gccgaaaaaa gcattgtacc       360
     ctggaagaaa agaagattgc cttgaatctt caacgagaag gaaaaagtct acgagaaatt       420
     gcgacaagcc ctggacgctc ggtgtgtttt attcagaatg ccttaaaatc gaaagatcct       480
     accgaaaaac gaggaaggaa gaagaaatct tcccaaacga cggacacccg catcgtcagt       540
     ctggcaaaaa aggatccctt tatgtcttcc aagtccactg ccgctgaaat cggcaatgaa       600
     atatcatctc gaacggttcg gcgcagactt aaaagtgccg gcctaacagg acatatagcc       660
     agaaaagttc ctttacttcg gaaaaaaaat ttacagatga ggcgccagtt tgcacaaaat       720
     catttggcat ggtctggacc agaaggttct aaaaaatgga acaatgtgtt atggagcgac       780
     gaatcaaaaa taaacctttt tggtaacgac tctagacgtt atgtacgacg cccaaaaggt       840
     aaagaattcg acccccggta cacaaagaag accgttaagc acggaggcgg atgcataatg       900
     gtttggggct gtttttcttg gcatggcgtt ggtccgatac atcgcatagc tgatattatg       960
     acccgatttg ggtataaaag tatactcgct gacgttatgc taccatattc tgaggaaaac      1020
     atgcctttga gatgggtctt tcaacaagac aacgacccaa aacacacctc aaagctggtc      1080
     aaggcttggt ttaccgaaaa cgaagtaaat cttatgagtt ggccaagcca gtctccggac      1140
     ttaaatccga ttgagagcct atgggaacac ttaaaacgtc gtatcggcac aaatactttt      1200
     cgaaatgccg cagaattgtg gacatttgtc caaaaaacct ggtatgacat tccaatggat      1260
     actagtagca agcttattgc tagtatgcca aaacgaatcg ccaaagttgt acaaaanaag      1320
     ggtggctata ctggatacta gttacagatt aaggaaatca aggaaatgtt gaaaaattgt      1380
     tgttaagttt tgagtttttg agtttgtaga attggtgtac ttattatttt gaccaaccca      1440
     tttttatgtt ttttagatat aatcaaccac aaactttata aatgaattga aaaatgccta      1500
     tgctaactat ttttataatc taatatatat caaaaagcta taagtaaatt taagcttttc      1560
     tttatgacca ttaaagaagt tttacgagaa gttaaagaaa ccgtacacgg gtgtacttat      1620
     tattttggcc agtagtgta                                                   1639
//
ID   Mariner-2_Dro repbase;    DNA;    INV; 1328 BP.
XX
AC   .
XX
DT   12-DEC-2011 (Rel. 17.07, Created)
DT   06-JUL-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila genomes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_Dro.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RP   1-1328
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the Drosophila genomes.";
RL   Repbase Reports 12(7), 1190-1190 (2012).
XX
DR   [1] (Consensus)
XX
CC   TA TSDs. ~80-bp TIRs. It is found from several Drosophila
CC   species. In D. rhopaloa and D. eugracilis, many copies are >99%
CC   identical to the consensus and thus, very likely are active. The
CC   consensus is ~98% identical to that of Mariner-1_DBi.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1271
FT                 /product="Mariner-2_Dro_1p"
FT                 /translation="MDQRICIKFCVKNKIKCSETLEMLTVAYGETVLSKKN
FT                 VYKWYKLFQDGREDANDQPRSGRPSTSTTDENVQAVTKIVLENRRITIREV
FT                 AEDVGISLGSCHEIFSNVLGMSRVSAKFVPKLLNFDQKNRRMSIAQELLND
FT                 VNDDPDLLKRVITGDESWVYGYDIETKAQSSRWKSPGEPRPKKAKNRRARS
FT                 NVKVLITVFFDYHGVVHQEFLPYGRTVNKQYYLEVMRRLREAIRKKRPELW
FT                 KNNSWLLHHDNAPAHSSLLVRDFLAKNNTTIMPQPPYSPDLAPCDFFLFPK
FT                 LKRPMKGRRFATIEEIKTASLQELKAIPKSAYGKCFEDWKNRWHKCIVSEG
FT                 DYFEGDNINIDK"
XX
SQ   Sequence 1328 BP; 411 A; 250 C; 293 G; 374 T; 0 other;
     cgaggtgtgt tcaaaaagta aggtgacttt tcaaatttcg cgggcaacat attttcgatt        60
     atcgattttt ttgttttgtt atattggtac actcttccct aacatctgta ccaagtttca       120
     atggaacatc ctcttttgtt tggttgtgag aggcgtaaag ttacaagtta ttttgcgagc       180
     tcggcgattt tttgctatcg aaaaatatgg atcaaaggat ttgcatcaaa ttttgtgtaa       240
     aaaataaaat taagtgctct gaaacacttg aaatgttgac agtggcatac ggtgaaactg       300
     ttctgagtaa aaaaaatgtg tacaagtggt acaaactctt ccaagatggc cgggaagatg       360
     ccaatgacca gcctcgctct ggacgcccaa gcacgtcaac aactgatgaa aacgttcaag       420
     cagtgacgaa aattgttttg gaaaatcgtc gaatcactat cagagaagtt gctgaagatg       480
     tcggtatatc gcttggctcg tgccatgaaa ttttttcaaa cgttttgggt atgagtcgtg       540
     tgtcagcgaa gtttgttccg aaattgctga attttgacca aaagaaccgt cgcatgagca       600
     tcgctcaaga gctgttgaat gacgtcaacg acgacccaga tttactcaaa agggtcataa       660
     ctggtgacga atcatgggta tatggttatg atatcgaaac caaagcccaa tcgtcccgat       720
     ggaagagccc aggcgagcca agaccgaaaa aagcaaaaaa tcgccgagct cgatcaaatg       780
     tcaaagtttt gatcactgtt ttcttcgatt accatggcgt ggtgcatcag gagttcttac       840
     catatggtcg tacggtcaat aaacagtatt atctggaagt tatgcgccgt ttgcgagaag       900
     caatacgaaa gaaacgtcca gaattgtgga aaaacaattc atggcttttg catcacgata       960
     atgcccctgc tcactcatct ttgcttgtga gagatttttt ggccaaaaac aacaccacaa      1020
     taatgcctca gccaccatat tcaccggatt tggccccatg tgactttttc ttgttcccaa      1080
     aactgaagag acctatgaaa ggacggagat ttgcaacgat tgaagagata aagactgcat      1140
     cgctgcaaga gctcaaggct ataccgaaaa gtgcttatgg gaagtgcttt gaggattgga      1200
     aaaaccgttg gcataagtgt attgtatctg agggggatta ctttgaaggg gacaacataa      1260
     atattgataa ataaattaat agtttttctt gaaaatacaa agtcacctta ctttttgaac      1320
     acacctcg                                                               1328
//
ID   Mariner-2_DSuz repbase;    DNA;    INV; 1302 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   11-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1302
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 132-132 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 31-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..1161
FT                 /product="Mariner-2_DSuz_1p"
FT                 /translation="MPCDAPLESSINSALFACSLFTIRFAHFAMPRIEEHV
FT                 RQKIVHNYCTENGVSYRNLAKRYKVSVNSVKNIIIKFGETCSLKDLPKTGR
FT                 KKGPRDASVDKKVLALIHKNPTMSVRDLAKKTRTSTSMVQRIKQRHGLKTY
FT                 KKQKVPKKSLRQQNVGKTRVRRLYDRLLTDAVECVVMDDETYVKLDSKTLP
FT                 GPQFYTKAKGETVDDSVTKIEVDKFGEKVLIWQAICTCGLKTSPFFTKGTI
FT                 NADVYQRECIKKRLIPFYRKHNVSTIFWPDLASAHYARSTLALLEAENIKF
FT                 VSKEENPPNCPELRPIERYWAIVKRNLLKNGSLSQNNIDMKKNWMRAAGKV
FT                 TKEGVQNLMRGVKQKIRSKIRC"
XX
SQ   Sequence 1302 BP; 463 A; 244 C; 269 G; 326 T; 0 other;
     aggaatgtgc cgaaaagaaa ctgcacactt tcaattgtca aaagctctca gtgggagctt        60
     tcgatcatgc catgcgatgc accgttagaa agctctatta attctgcgtt gtttgcatgt       120
     tctcttttca ctattcgttt tgcacatttc gcaatgcctc gaattgaaga gcatgttcgc       180
     caaaaaattg tgcacaatta ctgtacagaa aacggtgttt cgtaccgaaa tttggcaaaa       240
     cgctacaaag ttagtgttaa tagtgttaaa aatattataa tcaagtttgg ggagacatgc       300
     tctctaaaag atttgccaaa gactggtaga aaaaaaggtc caagggatgc cagcgtcgat       360
     aagaaggtgc tggccttaat tcacaaaaat cccacgatgt cagttcgaga tttggccaaa       420
     aaaacgcgta cgagtacaag tatggttcaa cgcataaaac aacggcatgg actaaagacg       480
     tataaaaaac aaaaagttcc aaaaaaaagt ctgcgtcaac aaaacgtcgg caaaacgaga       540
     gtgcgcagac tttatgatcg cttgctcact gatgcagtgg aatgcgttgt aatggacgat       600
     gaaacatatg taaaattgga ctccaaaact ttaccaggcc cccaatttta cacaaaagcc       660
     aaaggtgaaa cagttgacga ctcggtcacc aaaatagaag tggacaaatt tggggagaaa       720
     gtcctgatat ggcaggcaat ttgcacctgt ggcttaaaaa ccagcccatt ttttacaaaa       780
     ggcacaatta acgctgacgt ttatcaaaga gagtgcatta aaaaacgttt aataccattc       840
     tatcgaaagc acaacgtgtc gacaatattt tggccagact tagcgtcagc gcactatgcc       900
     cggtcaacat tggcgctcct tgaggcggaa aacatcaagt ttgtttcaaa agaggagaac       960
     ccaccaaatt gcccagagct gcgtcccatt gagagatatt gggccatcgt taagcgaaat      1020
     ttattaaaaa atggtagtct ctcccaaaac aacatagaca tgaaaaaaaa ctggatgcgt      1080
     gcagccggca aggtcaccaa ggagggtgtg cagaacctga tgagaggagt taaacaaaaa      1140
     attcgctcaa aaataagatg ttaatttttt tttaattctg tttataaaaa ttgaacgttt      1200
     aagttttgct ttaaaaaaaa caaaaagaaa aattgaaatc gaataaaaaa catgaaagtt      1260
     atagtagaaa gaaagtgtgc agtttctttt cggcacattc ct                         1302
//
ID   Mariner-2_DT repbase;    DNA;    INV; 1453 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.08, Created)
DT   31-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA trotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1453
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1437-1437 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           350..1342
FT                 /product="Mariner-2_DT_1p"
FT                 /translation="MGRGKHCTAERRDLIKKLISDGKTYVEVQNIIGCSST
FT                 MVRNTIKHEPANETRGRPKILDKRSVDRLARQSRIEPFASAASLKKRCDLN
FT                 VSLETIRRRLRDNNLISRSPRKVPLLTKKHAAKRLKFAREHLTWPLEKWRN
FT                 ISWSDESKIVKFGGRGSRQFVRRPPLCAFTPKYTLKTVKHGGSSIMIWASF
FT                 SYYGVGPIYWVKTIMDRYLYVSILNDVMLPYASEDMPLIWTFQQDNDPKHT
FT                 SKLAKEWFAANEVDVMEWPAQSPDLNPIENLWCDVKRAVSELKPSNNFQLW
FT                 EAVQRSWSSIPLERCQNLVNSMHKRCASVIANKGYATKY"
XX
SQ   Sequence 1453 BP; 451 A; 278 C; 292 G; 432 T; 0 other;
     cggtcaaaat aatagtagtg ccgttcgcgc acagagtttt ttctaaatat tttctctatt        60
     tcttcacgta tccaactcat tctttctcaa aagtaactgt aattatcctc tctttaaaaa       120
     tgtgcagtta tgttaggatc tcgtctctct ttgtattccc tttcgccttt tattgcaaag       180
     atgcacgtgt tggggtcagt caaaataata gtagtgccag agaaattagc aagaataatt       240
     aaatttactt ctttttaaac aaggtttgtg ttattaaaca atacgtttgg atgttattta       300
     ttagtcccta gcatttttag atccctgctc aacacttagt cctggctaca tggggcgtgg       360
     caaacactgt actgccgaga ggcgagatct aattaaaaaa ttgatttctg atggaaagac       420
     ttatgtagaa gtgcaaaata ttataggctg ctcctctaca atggttagaa atactattaa       480
     acatgagcca gcaaatgaaa cgcgtgggcg cccaaagata ttggacaaaa gatcagtgga       540
     tcgcttggcc agacagtcaa ggatcgagcc attcgcgtcc gctgcatcac taaaaaaacg       600
     ttgtgactta aatgttagtt tggaaacaat aagaaggagg cttagagata ataacctcat       660
     ttcaagaagt ccaagaaaag taccgttact cacaaaaaaa catgccgcca aacgcttgaa       720
     gtttgcaaga gaacacttga cttggccctt ggagaagtgg aggaatattt cgtggtcgga       780
     tgagtcaaaa atagttaagt ttggaggccg tggctctcgg cagtttgtta gacgaccacc       840
     cttatgcgct tttactccaa agtatacctt aaaaacggta aagcacggtg gatcatcaat       900
     tatgatttgg gcgagttttt catattatgg agtaggccct atatattggg tcaaaaccat       960
     aatggaccgt tatctatacg tcagtatttt gaacgacgtg atgctcccat atgcctctga      1020
     ggacatgcct cttatttgga cgttccaaca ggacaacgat ccgaagcaca ccagcaaact      1080
     tgctaaagag tggttcgcag ccaatgaagt cgatgtcatg gagtggcccg cacagtcacc      1140
     cgatctcaat ccaattgaga atttgtggtg tgacgtgaaa agagcagtct cggaattaaa      1200
     accaagcaat aactttcaac tttgggaagc tgtacaaaga tcttggagct ctattcctct      1260
     agagagatgc caaaatttag ttaattccat gcataagcgc tgtgcgtctg ttattgcaaa      1320
     caaaggatat gccaccaaat actaaaataa accttaaata taggtctaat atatacattt      1380
     aaatattcaa tcttaaaacg ttttttttgg ctgtgaaatt ttttggaact tttcactact      1440
     attattttga ccg                                                         1453
//
ID   Mariner-2_DVi repbase;    DNA;    INV; 1617 BP.
XX
AC   .
XX
DT   09-OCT-2011 (Rel. 17.09, Created)
DT   09-OCT-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   A Mariner/Tc1 DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1617
RA   Jurka J.;
RT   "DNA transposons from Drosophila virilis.";
RL   Repbase Reports 12(9), 1737-1737 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 3 copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           348..1382
FT                 /product="Mariner-2_DVi_1p"
FT                 /translation="MPGKRTSFDIAQLAYYNHQIGKTVIELSEMFSLSRQT
FT                 IYNILDRAKNENRLDTKVSSGRPRKLSDRDERKILRKVEKNPKISIRNISR
FT                 DLEQESGINVSHETIRKILNSNAYTSRVARKKPLLSNINIEKRLSFAQMHL
FT                 GKPAGYWDDVXFCDETKIMLFYNDGPSRVWRKPLKALEARNIIPTVKFGKL
FT                 SVMVWGCISSKGVGDLAFIENTMDAAKCLEILKTYLISSAHKFGFFDGNRP
FT                 NFKFYQDNDPKHKAHIVKMWLLYNCKKVLDTPPQSPDINPIENVWSFLKKK
FT                 VAKRSPKSRDELKADILEEWIKIPETYNMDNLVKSMNRRLQAVCAAKGRHT
FT                 KY"
XX
SQ   Sequence 1617 BP; 546 A; 272 C; 304 G; 493 T; 2 other;
     tacagtatgt caacaaattg ttttgacaaa gcgaaaaatt catattttcc agattaaggt        60
     gcactttaaa caacattctt ttaatgtttc taagaactag tttaaaaaaa tacatattga       120
     gatcgattac tccaaacaat ttttaaaaat caaaatcaaa aataatccat ttttaatggt       180
     gtcaagaaat tgttttgaca accactgtca tcgatttcgc aattcgcttt tgatgcgatc       240
     ccgttagaat tcagttttca tattttgcct cttactttgc ctatgaattc tgttagcatt       300
     ttctgaagaa attttgagcg cgtgttgaac tttgtggaca aacaaaaatg ccagggaagc       360
     gaacatcttt tgatattgcc caattggctt actataacca ccagatcggc aaaacagtga       420
     tagagttatc cgagatgttt tcgttgtcca gacaaacgat atataacatc ttggaccgcg       480
     caaaaaatga aaatagacta gacacaaagg tctcaagtgg gcgtccgcga aaactatctg       540
     atcgagacga gcggaaaata ttgagaaaag tggaaaaaaa tcccaaaatt tctatcagga       600
     acatttcacg ggatcttgag caagaaagtg gtatcaatgt ttcccatgaa acaataagaa       660
     agatcctgaa ttccaatgcc tatacatcgc gggttgcacg taagaagccc ctgctttcaa       720
     atattaatat tgagaagcgg ctttcattcg cgcaaatgca cttggggaag ccagcagggt       780
     attgggatga cgtcanattc tgtgacgaaa ctaaaattat gcttttttat aatgatggac       840
     catccagagt ctggcggaag cccttaaagg cattggaagc ccggaacata ataccgacgg       900
     taaagtttgg aaaactttcc gtgatggtat ggggctgtat atcaagcaag ggcgttggtg       960
     acttggcttt tattgaaaac actatggatg ctgccaaatg tttggaaata ttaaagactt      1020
     atttaataag tagcgctcat aaatttgggt tttttgatgg caacagacca aatttcaaat      1080
     tttaccaaga caatgacccc aagcataagg ctcatatagt naagatgtgg ttgctataca      1140
     actgtaaaaa agtattggac actcctccac agagccctga cataaatcct attgaaaatg      1200
     tttggtcctt tttaaagaaa aaagtggcaa aaaggagtcc gaaatctcgc gacgaattga      1260
     aagctgatat tcttgaagaa tggataaaga ttcctgaaac ttataatatg gataacctag      1320
     ttaagtctat gaaccggaga ttacaggctg tatgtgctgc caaaggccgt catacaaagt      1380
     attagcgtct cgtttttact tatttccatg aatattatag gtctaaaaac gttttgtcaa      1440
     aacaatttct tgacaccatt aaaaatggat acttcttaat tttgattttt aaaaaatgtt      1500
     tggagtaatg gatctcaata tgtatttttt gcattaaaag tatgtggttt aaattgcata      1560
     ttaatctcga aaatatgaat ttttcgcttt gtcaaaacat tttcttgaca tactgta         1617
//
ID   Mariner-2_DYa repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   16-MAY-2009 (Rel. 14.06, Created)
DT   16-MAY-2009 (Rel. 14.06, Last updated, Version 2)
XX
DE   Mariner-type sequence: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1630
RA   Jurka J.;
RT   "DNA transposon families from fruit fly.";
RL   Repbase Reports 9(6), 1153-1153 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           384..1388
FT                 /product="Mariner-2_DYa_1p"
FT                 /translation="MKKLPINVEDSVINLTENGFSTRIIAGKLNISQSAAI
FT                 RVQKRRNAVPKIQRRSPRRLLTDADARLMMQNIKKDNNCRPKDASAAIGKP
FT                 VSQWTACRALKRIGFVSELKKKKPALSDKNIKARLKFAKAHKNWQVDDWKK
FT                 VIWSDESKFNRYQSDGKQYCWKKPGESLQRRHLQETVKQGGGNVMVWSCFT
FT                 WWSIGPIKKIEGTMKKEDYLDILQTHLCDFVDKCVYNESHITFQQDGDPKH
FT                 TSKIVKEWIGNQDFKLMEWPAQSPDLNPIENLWSIVKRRLGQYESVAANQH
FT                 ELWQRIQQEWKAIPKEIVQNLVESMPNRIKSVIRNKGLWTKY*"
XX
SQ   Sequence 1630 BP; 606 A; 253 C; 318 G; 453 T; 0 other;
     cagtggcgtg caagtatgag tacatgtttg caacttttga ctgttcgcct aaataaaaaa        60
     ggtattagtt aagcaaatga acccaaattt ttactgttga ttctttgatt atttatttac       120
     aaattcgtaa aaaaaaaata acaataatgt aattcttttc gttaggaaaa aaataaaatt       180
     taaattaact cgcatgtact caattatgct caatttgaat ttttcaacaa aagttggaca       240
     gctcattcaa ctgaaagttt aattttagaa tttaccgttt gtttttaaga aagtttaata       300
     taaaagtata aatataaaag ctttcaacca aaaaggtacg aatctccacg tgtttttggc       360
     tcttaactat taaaacaaat aatatgaaga aattgccaat aaatgttgaa gattcagtga       420
     taaaccttac tgaaaatgga ttttcgacgc gtataatagc tgggaagtta aatataagcc       480
     aatcagcagc cattcgtgtt caaaaaaggc gaaacgcggt acccaaaatt caaagaagaa       540
     gtccacgtcg attgttgacc gatgcagatg cgcggctaat gatgcaaaat attaaaaagg       600
     ataacaattg tagacccaag gatgcgtctg cagctatagg caagcctgtc agccagtgga       660
     cagcgtgtcg agcacttaag cgtattggat tcgtttccga attaaaaaaa aagaaaccgg       720
     ccttgtccga taaaaatata aaagcacggc taaaatttgc gaaggcacat aaaaattggc       780
     aagtggacga ctggaaaaaa gttatatggt ctgatgaatc aaaattcaat cgataccagt       840
     cggacggaaa acaatattgt tggaaaaagc ctggagagtc gctgcaaaga cggcacctac       900
     aggaaacagt aaaacaagga ggaggaaatg tcatggtctg gagctgtttt acctggtgga       960
     gcattggacc aataaagaaa atagaaggaa ctatgaaaaa agaggactat ttagatattc      1020
     tgcagaccca tctttgcgat tttgttgaca aatgcgttta taatgagagt catatcacat      1080
     tccagcaaga tggagatccg aaacacacgt ccaaaatcgt gaaggaatgg atcggaaatc      1140
     aagattttaa gttaatggag tggccagctc agagtcctga tctcaatcca atcgaaaatt      1200
     tgtggtcgat tgtgaaaaga cgattgggac aatacgaatc ggttgcagca aaccaacacg      1260
     agttgtggca acgaatccag caagaatgga aagctattcc gaaggaaatt gttcaaaatc      1320
     tggtggaaag tatgccaaat cgaataaaaa gcgtcatcag aaataagggt ctttggacta      1380
     agtactaaaa gataagcttt tgttgaaaaa ttcaaattga gcataattga gtacatgcga      1440
     gttaatttaa attttatttt tttcctaacg aaaagaatta cattattgtt attttttttt      1500
     tacgaatttg taaataaata atcaaagaat caacagtaaa aatttgggtt catttgctta      1560
     actaatacct tttttattta ggcgaacagt caaaacgttg caaacatgta ctcatacttg      1620
     cacgccactg                                                             1630
//
ID   Mariner-2_FoCa repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   30-OCT-2019 (Rel. 24.12, Created)
DT   30-OCT-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1295
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2470-2470 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. TA TSDs. 27-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           106..1188
FT                 /product="Mariner-2_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MGGTTKRVSHEHLRVKIQTLHQQGFKPAEIVQKLGCS
FT                 RRTVWKWKNKNFVHDKKRPGRPRKVSPTTKRMIKNRLYKKTGSSLRNCARE
FT                 LNDSKRYKEKKKQINYVTVQKFVKSTRWGHTAYKLTKKPLMSQKNIDDRLK
FT                 FGELLQKSGHLSEKRLGEELRSHILWTDESIIELYPKLNQQNVRYRTENKS
FT                 DVPSRAVPKFGLKVMVAGGFCARGVTPLHIIPKGQTVNAKYYMEKILPIYF
FT                 DSMGNKEIFPNERKIVFMQDGATAHTAKASLSLIKTQVSTVWSKGVWPGNS
FT                 PDLNPLENLWSILKENVYKEPQPRTREELVKKVQDVWNSIPTDTLEKLAQS
FT                 LKQRVEGMVKVNGNKTKY"
XX
SQ   Sequence 1295 BP; 467 A; 232 C; 279 G; 317 T; 0 other;
     aagggtgtta ataaagtccg atcccatgaa ttttttggag cgcggttgtt acaaattcag        60
     ctggaacttt tgaaccagtg aagttattta tttcaaattt ttaccatggg aggaacaact       120
     aaacgtgtaa gtcatgagca tcttagagtt aagatacaaa cattgcatca gcaggggttt       180
     aaacctgcag aaattgtgca aaaattgggc tgcagccgca gaactgtttg gaaatggaag       240
     aacaaaaatt ttgtccacga caaaaagcga cccgggcgac ccagaaaggt gtcacctacc       300
     acaaagagaa tgattaaaaa cagactttac aagaaaaccg gtagttcatt acgtaattgt       360
     gcaagggagt taaatgactc aaaacgctat aaagagaaga agaagcaaat taactatgtg       420
     accgtgcaaa aatttgtgaa atctacgagg tggggtcaca cagcttacaa actaaccaaa       480
     aaacctctca tgtcacaaaa aaatatcgat gaccgtctga aatttggaga actccttcag       540
     aaaagtggcc atttgagtga aaaaagactt ggtgaagaat tgcgcagtca catcctttgg       600
     actgacgaat ctattattga gctatatcca aaattgaacc aacaaaatgt tcgttacagg       660
     acagaaaaca aatcggatgt accatcaaga gcagtcccaa aattcgggct taaagttatg       720
     gtagcgggtg gattttgtgc acgtggcgtg actcctctac atatcatacc aaaaggccaa       780
     acagtcaatg caaagtatta tatggaaaaa atattaccta tctatttcga tagcatgggg       840
     aacaaggaaa tatttccgaa tgaaagaaaa atagttttca tgcaggatgg tgctacagcc       900
     catacagcaa aagcgagttt gagtctcatc aagacgcaag tttcaacggt ctggagcaag       960
     ggggtgtggc ccggaaacag cccagatttg aatcccctgg agaacctgtg gtccatactt      1020
     aaggaaaatg tatacaaaga accacaaccc cggacgaggg aagagctagt aaaaaaagtt      1080
     caagatgtat ggaattcgat tcccacagac acattggaaa aattagcaca gagccttaaa      1140
     caaagagttg agggcatggt taaagtaaat ggtaacaaga ccaaatacta aggtaaatat      1200
     gtcgaacatt ttttgtaagt atcacgggta gtttttttta tactagcctt cactttttta      1260
     taggaaaaat gggatcggac tttattaaca ccctt                                 1295
//
ID   Mariner-2_HSal repbase;    DNA;    INV; 1314 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1314
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 842-842 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1212
FT                 /product="Mariner-2_HSal_1p"
FT                 /translation="MEKQNEHFRHILLFYFRKGKNASQAHKKLCAVYGDEA
FT                 LKERQCQNWFAKFRSGDFSLKDEQRSGRPGEVDDDQIKAIIDADRHSTTRE
FT                 IAEKLDVSHTCIEKRLKQLGYVKKLDLWVPHELKEIHLTQRIAICDLLMKR
FT                 NENDPFLKRLITGDEKWVVYNNVNRKRSWSKQDEPAQTTSKADIHQKKVML
FT                 SVWWDYKGIVYFEILPRNQTINSDVYIQQLTKLNNAIQEKRPELANRKGIV
FT                 FHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYYLFRSLQNFLN
FT                 GKNFNNDDDVKSHLVQFFADKNQKFYERGIMTLPERWQKVIDKNGQXVTA"
XX
SQ   Sequence 1314 BP; 446 A; 228 C; 253 G; 386 T; 1 other;
     tattgggttg gcaactaagt aattgcggat ttcactgata gatggcgtta gttgaatttt        60
     taggtatatt tacgtattcg aaatgtcaaa cccatattgt tgtttgatag ttggtacttc       120
     aattggcatt cagtaaaaaa attgtatcga tcggttgtgt agtttttgtt tggcgtcggt       180
     tgaaaaatgg aaaagcaaaa cgagcatttt cgtcatattt tgctttttta cttccgcaaa       240
     ggaaaaaacg catcgcaagc tcacaaaaag ttatgtgctg tgtatggtga cgaagcctta       300
     aaagaacggc agtgtcaaaa ttggtttgct aaatttcgtt ctggtgattt ttcactcaaa       360
     gatgaacaac gctctggtcg tccaggtgaa gttgatgacg accaaatcaa agcaataatc       420
     gatgcggatc gtcatagcac aacacgtgag attgcagaga agctcgatgt atcacataca       480
     tgcattgaaa agcgtttaaa acaacttggc tacgtaaaaa aactcgattt atgggttcct       540
     catgaactta aagaaattca cttaacacaa cgcattgcca tctgcgattt gcttatgaaa       600
     cgtaacgaaa atgatccatt tttgaaacga ttgataactg gcgatgaaaa atgggttgtt       660
     tacaacaatg tcaatcgaaa aagatcgtgg agcaagcaag atgaaccagc gcaaacaaca       720
     tccaaagctg atattcatca aaagaaagtt atgttatcag tttggtggga ttacaaagga       780
     attgtctact ttgaaatttt accacgcaac caaacgatca attcagatgt atacattcaa       840
     caactaacca aactgaacaa tgcaattcaa gaaaagcgac cagaattggc aaatcgaaaa       900
     ggtattgtgt tccaccatga caatgcaagg ccacacacat ctttggtcac tcggcaaaaa       960
     ttattggagc ttggttggga tgtgttgcca catccaccat atagtcctga ccttgcacca      1020
     tcagattatt atttatttcg ttctttgcaa aacttcttga atggtaaaaa tttcaataat      1080
     gatgatgatg tcaaatcgca cttggttcag ttttttgccg ataaaaacca gaagttttat      1140
     gaacgtggaa ttatgacgct gcctgaaaga tggcaaaagg tcattgataa aaatggacaa      1200
     nacgtcactg cataaatgga caatacatta ctgcataaag ttatttcgtt ccatgaaaaa      1260
     attgtctttt attttcttaa aaaaatccgc aattacttag ttgccaaacc aata            1314
//
ID   Mariner-2_LHu repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 360-360 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus (made of 2 copies).
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1208
FT                 /product="Mariner-2_LHu_1p"
FT                 /translation="MTFRYCVHSICRAVSNMSKFVPEKSFLRGVLLHYFNM
FT                 KKSAAESHRILVDVYGEHALAEQTCRKWFARFKNGNFDLEDKERPGQPKKF
FT                 EDEDLVTLLDEDPGQTLLELSSSLGVDFSTVSKRLKAIGMVQKQGTWVPHE
FT                 LKPRDVERRLVTCELLLQRQVRKGFLHRIVTGDEKWVLYDNPKRRKSWGFP
FT                 GHASISSPKQNIHGKKIMLCIWWDQLGVIYYELLQPGETITGDLYRRQLTR
FT                 LNRALQEKRPQYKDRHDKVILLHDNARPHVSKVVKTYLETLKWEVLPHPPY
FT                 SPDIAPSDFHLFRSMAHGLSEQHFDNYEMTKNWIDSFIESKDEEFFRRGIR
FT                 ALPERWQKVVDNDGQYFE"
XX
SQ   Sequence 1291 BP; 395 A; 260 C; 296 G; 340 T; 0 other;
     tactaggtgt tggaattaat tcgtagcgtt ttacaaaaga tggcattagc caactattta        60
     tagtcacaca tacaaaagta aatattccct aggaagctac tggtatagcg catctttacc       120
     agtatatgac gtttcgttat tgtgtccata gcatttgtcg tgcagtgtca aacatgtcga       180
     agttcgtacc tgaaaaatcg tttttgcggg gagtgttact tcattatttc aatatgaaga       240
     aaagtgccgc ggaaagtcat cgcattttag tggatgttta cggtgaacat gccctggctg       300
     agcaaacttg cagaaagtgg tttgcgcggt tcaaaaatgg aaattttgac ttggaagaca       360
     aggaacgtcc cggtcagccg aaaaagttcg aagatgaaga tttggtgacg ttgctcgatg       420
     aagacccggg ccaaacactt ctggagttat cctcatcgct tggagtcgac ttttcgacgg       480
     tcagtaaacg ccttaaagcc ataggaatgg tacaaaaaca aggaacgtgg gtcccacatg       540
     agttaaagcc aagggacgtc gaacggcgtt tagtcacctg tgagctgctg cttcaacggc       600
     aggtaaggaa aggatttttg catcgaatag tcactggcga cgaaaagtgg gtactctacg       660
     acaatcccaa acgcagaaaa tcgtggggct ttcccggtca tgcatcgata tcatctccca       720
     agcagaatat tcatgggaag aaaatcatgt tgtgcatatg gtgggatcag ctgggcgtta       780
     tctattatga gttgctccaa ccgggtgaaa ccatcactgg ggacctctac agacgacaat       840
     tgacgcgttt aaatcgagca ttacaggaaa agcggccgca atataaagat cgacatgaca       900
     aagtaatttt gctccatgac aatgcgagac ctcatgtttc gaaagtcgtg aaaacttatt       960
     tggaaacgct aaaatgggaa gttttgcctc acccgccata ttccccggat attgctccat      1020
     ctgattttca tttgttccga tccatggcgc atggcttatc agagcagcac tttgacaact      1080
     acgaaatgac taaaaattgg atcgattcat tcatcgaatc taaagacgaa gaatttttcc      1140
     gacgtggtat ccgtgctttg ccagaaagat ggcaaaaagt agtggataac gatggacaat      1200
     actttgaatg acgccactgt aatgatactt gcataataaa ccacgaaaat ttttgcaaaa      1260
     aaacgctacg aattaattcc aacacctagt a                                     1291
//
ID   Mariner-2_LMi repbase;    DNA;    INV; 1305 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1305
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3004-3004 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           197..1231
FT                 /product="Mariner-2_LMi_1p"
FT                 /translation="MDRSVEQRYAIKFCVKLGKSATETFPLLQRAFGTDCL
FT                 SKSQVFRWHKSFMEGREEITDEPRSGRPLTSRVDENVTRVRDCLNSDRWLS
FT                 LQLIAQTLNMAKTTVFRIVTEDLNMRKVCAKLVPKVLTDEHKHMRVLRCRE
FT                 MLEMCENDPHFLNSVITGDESWIFEYDPETKRQSSEWHTPSSPRPKKARMS
FT                 KSRMKTMLIVFFDVRGIVHHEFVPTGTTVNSAFYLEVLKRLKRRVSRCRSD
FT                 IKDTWKLHHDNAPSHSAFIVNEFLARTNTPLVPQPPYSPDLAPADFFLFPR
FT                 LKGVMKGKHWDTIESIQAHVTSALKDIPEKAFQAWKHHLQKCIDARGCYFE
FT                 NF"
XX
SQ   Sequence 1305 BP; 352 A; 314 C; 314 G; 325 T; 0 other;
     caaggtgcgt tccataagta atgcgaccaa tttttttctg acgcaacggt acaccacagc        60
     gtgttgtaac cagctgggct aagtggaggg gggtgttagc ttcaaaacgc tctttgtctc       120
     attcggctgc gagctgccgg agagtcagga cgtgcgtttc cgtcaacccc gttttgagtt       180
     tatgtaacac ggcacaatgg atcgttctgt agagcaacgg tacgccatca aattttgcgt       240
     taaacttggg aagtccgcca ccgaaacgtt tccattactt cagcgtgcct ttgggactga       300
     ttgcttgtcc aaatcacaag ttttccgatg gcacaagtca ttcatggagg gccgagagga       360
     gatcaccgac gaacctcgca gtggacggcc attaacctca cgagtcgacg aaaatgtgac       420
     gcgtgtgcgc gattgtttga actctgacag atggctgagc cttcaattga tagcacaaac       480
     tctaaacatg gcaaaaacaa ccgttttccg cattgtgacc gaagatttga acatgagaaa       540
     ggtgtgtgcc aaactcgtcc caaaagtgtt gaccgacgaa cacaagcaca tgcgagtgct       600
     tcggtgccga gaaatgttgg aaatgtgtga aaatgatcct cattttttaa actcagttat       660
     cactggtgat gagtcgtgga tttttgagta cgaccctgag acaaaaaggc agagttcaga       720
     gtggcacacc ccatcgtcgc cccgtcccaa gaaggcacgc atgagcaagt ccaggatgaa       780
     aaccatgctc attgtcttct ttgacgtcag aggcattgtc caccatgaat tcgtacctac       840
     cgggactact gtgaactcgg ctttctactt ggaagtgctc aaaagactga aaaggagggt       900
     ctcgcgctgc cgaagcgaca tcaaggacac atggaaactt caccacgaca atgcgccgag       960
     tcacagcgcc ttcattgtca acgagttcct ggccaggacc aacaccccat tggttcccca      1020
     gcctccctac agtcctgacc tggctcccgc tgactttttt ttgtttcctc ggttaaaagg      1080
     agtcatgaaa ggaaaacatt gggacacgat tgaaagcatc caggcgcatg ttacatcagc      1140
     tctaaaggac attccggaaa aggccttcca ggcatggaaa caccacctcc agaagtgtat      1200
     cgacgcaaga gggtgctatt ttgaaaattt ttgattattt gtacgaatat attcaataaa      1260
     tgatttttta tgaatttggt cgcattactt atggaacgca ccttg                      1305
//
ID   Mariner-2_MMo repbase;    DNA;    INV; 1269 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1269
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6264-6264 (2021).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..706
FT                 /product="Mariner-2_MMo_1p"
FT                 /translation="MSFRPLLTFNSHQLVSMCFKVVPKKLLSYIDLFTYKK
FT                 LNFKFFIAISGKMTTQKPXEXHIRHCMLFEFKKGSTAVVATKNICDVYPNA
FT                 LNVRKCQRWFSKFRSGNLDLSDAHRSGRPTTLDNDVLRAIVEANPCQTIQE
FT                 LSYSLSQPWSTIQEHLQQIGKVSRAGVWVPHNLSEQNKANRSIACNLLLQR
FT                 HNCDPFFDRLITGDEKWVLYDNPARKRQWLSPNEVPRSTC"
FT   CDS           618..1196
FT                 /product="Mariner-2_MMo_2p"
FT                 /translation="LPVMRNGSCTIILHAKGSGFLQMRYREVHAKPGLHPK
FT                 KALLCVWWSIRGIIHFEVLNPGQTVTADLYSXQLDXVHQALIEKCPAIVNR
FT                 KGVLLLHDNARPHCAKRTXQKINELGWEVLPHPPYSPDXAPSDYHLFRSLQ
FT                 HFLSGKKFENSNDIRNAISDYFSQKPINFYXSGIGNSPSRWQKVVDNERDY
FT                 IIE"
XX
SQ   Sequence 1269 BP; 403 A; 244 C; 253 G; 362 T; 7 other;
     gggggaccgg aaagtaatgt cgtttcggcc gttgttgaca tttaattctc atcagttagt        60
     ttctatgtgc tttaaagtcg tgccaaagaa attgttgagt tatattgact tgttcactta       120
     caaaaaatta aattttaaat tttttattgc aatttcaggt aaaatgacga cccagaaacc       180
     agangagntg catataagac attgcatgct ttttgaattt aaaaaaggta gcaccgcagt       240
     agttgctacc aaaaacattt gcgatgttta tcctaatgcc ttaaatgttc gcaaatgcca       300
     gaggtggttt tccaaattca gatctggaaa tttagatctt tctgatgctc atagatcagg       360
     aaggccaaca accttagaca acgacgtttt aagggcgata gtggaagcaa atccatgcca       420
     aacaatacaa gaattgtcct acagtcttag ccaaccttgg tcgaccatac aggaacattt       480
     gcagcagatc ggcaaagtta gcagagcagg tgtttgggtt ccacataatt tgtcggaaca       540
     aaacaaagcc aaccgatcca tcgcatgcaa cttattgctg caacgacata attgcgaccc       600
     attttttgat cgtttaatta ccggtgatga gaaatgggtc ctgtacgata atcctgcacg       660
     caaaaggcag tggctttctc caaatgaggt accgcgaagt acatgctaag ccgggtttac       720
     atcctaaaaa ggcacttttg tgtgtttggt ggagtatacg cggaataatt cattttgaag       780
     tgctaaatcc gggacaaact gtgactgcag atctttacag cnagcaattg gatngagtac       840
     atcaagcctt aattgaaaaa tgtcccgcga ttgtaaacag gaaaggcgtt ttgctgttgc       900
     acgataatgc cagaccgcat tgtgcaaaaa gaacgttnca aaaaatcaat gaattgggat       960
     gggaggttct acctcaccca ccatactcac ctgacantgc accatccgat tatcatttat      1020
     ttcgatcgtt gcagcacttt ttaagtggaa aaaaatttga aaattcgaac gatatccgaa      1080
     atgccatatc cgactatttt tctcaaaagc caattaattt ttaccantcc ggtattggaa      1140
     attcgccctc tagatggcaa aaggtggtcg ataatgagag agattatatt atcgaatgaa      1200
     actaaaagat attaaagatt tttcgatttc aatttaatct gaaaaaacga cattactttc      1260
     cggtccccc                                                              1269
//
ID   Mariner-2_PBa repbase;    DNA;    INV; 1317 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1317
RA   Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 614-614 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           198..1259
FT                 /product="Mariner-2_PBa_1p"
FT                 /translation="MCDSVGQRNCILFCLRNEISATETFRMLQKAFGDQAL
FT                 SRPRVFDWYKMLKDGRESVENEPHQRRPKTSTDEQHVKQIKDLVLQNRRLT
FT                 IRELADTVNISFGSVQTILKDHLCLRRVKSRLVPKTLNFLEKQRRVEVCET
FT                 MISDYQDKMKRMITGDETWIYAYDPETTDQSSEYRAKGEARPKRSRQSRSK
FT                 IKVLLTVFFDYRGVVHYEFLPPGQTVNKEYYLSVMRRLREAIRLKRPDLWA
FT                 DNSWFLHHDNAPSHTALVLRDHFAKNSTHIVPQPPYSPDLAPCDFWLFSKL
FT                 KRPLRGHRFESIEEIQAETKKVLKAIPEEEFSECFEDWKKRWHKCIASGGD
FT                 YFEGDEFDFEE"
XX
SQ   Sequence 1317 BP; 404 A; 239 C; 286 G; 388 T; 0 other;
     tactactgtg atcaaatata aacgagattt ttaaatttaa actgcgcggg ttcatcgatt        60
     ctgacaaata tttttttgat taagttggta gtactgtctt tgacatctgt gtgaaatttc       120
     atgtcattct cttcatttgt ttaatagtga acgctcgttt ttgtgaatat ccaaaagtat       180
     ttttttcgat ttttacgatg tgtgattctg ttgggcaaag aaattgtatt ttattttgtt       240
     tgcggaatga aatttctgct actgaaacgt tcagaatgtt gcagaaggct tttggtgacc       300
     aggctctatc aagaccaaga gtatttgact ggtataaaat gttgaaagat ggtcgagaaa       360
     gcgtagaaaa cgaaccacat caaagacgac caaaaacatc aactgatgaa caacacgtga       420
     agcaaatcaa ggatttggtg ctccaaaatc gtcgattgac aattagagaa cttgccgata       480
     ctgtaaacat ttcatttgga tcagtccaga ccattttgaa agaccatttg tgcttgagaa       540
     gagtcaaatc tcgtttggtt ccgaaaacac tcaatttttt ggaaaaacag cgtcgcgttg       600
     aagtgtgtga aacaatgatt tctgactacc aggacaagat gaaacgcatg ataactggag       660
     atgagacttg gatctatgcg tacgacccgg aaacaaccga ccaatcgagc gaatatcgtg       720
     caaaaggtga ggcaagacca aaaagatcgc gccaaagtcg ctcaaaaatc aaggttttgt       780
     taacagtttt cttcgattat cgtggtgtgg tgcattatga attccttccg ccgggccaaa       840
     ctgtcaacaa ggaatattat ttgagtgtta tgcgtcgttt gcgtgaagct attcgcctca       900
     agaggccaga tttatgggca gacaactcat ggtttttgca ccacgataat gcgccatctc       960
     acactgcact ggttcttcgt gaccatttcg ccaaaaactc gacccatatc gttccacaac      1020
     caccgtattc gcctgattta gcaccgtgtg acttctggct attcagtaaa ctcaaaagac      1080
     cgctccgggg acaccgtttt gaatcgattg aggagataca agccgaaacg aagaaggtat      1140
     tgaaggccat tccggaagaa gagttttcag agtgtttcga ggattggaaa aagcgttggc      1200
     ataagtgtat tgcatcggga ggggattatt ttgaaggcga cgaatttgat tttgaagaat      1260
     aaataaagat ttttcactct ataacaaaaa tctcgtttat atttgatcac agtagta         1317
//
ID   Mariner-2_RPr repbase;    DNA;    INV; 1318 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1318
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3248-3248 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1237
FT                 /product="Mariner-2_RPr_1p"
FT                 /translation="MASPLENCTVEEQRAVIRFLVAEGEKGSKIHKRMLKV
FT                 YGDNCLNRSNVYKWVEQFQSGRTKVSDEQRSGRPIEVGTSSLESRIDALIR
FT                 DNRRITVELISEKVNASVGTVHNIIHNKLQYKKTCARWVPRQLTDAHKETR
FT                 LQISQQLKNRYSTEGEGFFKRIVTCDETWIHHYEPESKRQSLEWKHTTSPI
FT                 RKKFRTQPSAGKVMLTVFWDFQGPIYCDFLEGQRTINSQYYSDMLENKIRP
FT                 AIRTKRRGLLTEGVILLHDNARPHTAQLTKEKLQKLGWEILPHPPYSPDLA
FT                 PSDFHLFGPLKDGLRGIHFRSNEEVKNQVQKWLRDQPKEFYAKGIYKLAER
FT                 WDKCISVAGDYVEK"
XX
SQ   Sequence 1318 BP; 432 A; 274 C; 292 G; 320 T; 0 other;
     tacgagggtc attcaataag taacgagaca aattactact gctcaaaaac agctaaattg        60
     atccgtatga aactttcagg acataaagtt ggcaaccttg cgatgacatc tgatcagctg       120
     ttcaattata ttttgtaaac ataacctcaa atttactcag ttaacgatgg cgagtccgct       180
     cgagaattgc accgtggaag aacaacgtgc cgtgatcaga tttttagtcg cggaaggtga       240
     gaaaggtagt aaaatccaca aaagaatgtt aaaagtgtac ggagacaatt gtttgaatcg       300
     ttcgaacgtt tacaaatggg tagaacagtt tcaaagtggc cgtacaaaag tttctgacga       360
     gcaacgcagt ggacgaccga tcgaagttgg gacttcctct ctcgaatctc ggattgacgc       420
     gttaattcgg gacaataggc gtatcaccgt tgaactgata agtgaaaaag taaacgcgag       480
     tgttggaact gtccataaca ttattcacaa caagctgcag tacaagaaaa cctgtgcgag       540
     atgggtgccc agacaactca cggacgctca caaagaaacc cggcttcaaa tcagtcaaca       600
     gttgaaaaat cgatattcga ctgaaggaga aggttttttc aaaagaattg taacgtgtga       660
     tgaaacatgg atccaccact atgagccaga gtcaaaacga cagagccttg agtggaagca       720
     tacgacttct cccattcgga aaaaattcag gacccagcca tctgccggta aagtcatgct       780
     tacagtattc tgggattttc aggggccaat ttattgtgat tttcttgaag gccaaagaac       840
     aatcaacagc cagtactaca gtgacatgct ggaaaacaag ataagacctg caattcgaac       900
     gaaacgccgt gggctcttga ctgaaggcgt gattttgctt catgacaacg cccgtccaca       960
     tacggcacag ctgacgaaag aaaaacttca gaaactggga tgggagatcc ttccacatcc      1020
     cccctacagc cccgacctcg ccccatcaga cttccatctg tttggacccc ttaaagatgg      1080
     tctacgaggg atacattttc gatccaatga agaggtaaaa aatcaggtgc aaaagtggct      1140
     tcgagatcaa cccaaagaat tttatgccaa gggcatttac aaattagcag aaagatggga      1200
     caagtgtata agtgttgctg gggactatgt tgaaaagtaa ccaaagtttt gtactgattc      1260
     aataaaccgt ttttgagcaa taataatttg tctcgttact tattgaatga ccctcgta        1318
//
ID   Mariner-2_SIn repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   13-NOV-2011 (Rel. 19.02, Created)
DT   13-NOV-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1288
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 319-319 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-2_SIn_1p"
FT                 /translation="MSSFVPNKHHLREVLIFCFNWKKSAAEAHRMLVEVYG
FT                 ESAPSDKSCREWFRRFKSGDFSVEDKERSGQPKKFEDEELETLLDQDSCQT
FT                 QEELAKTLEVTQQAISKRLKAAGYIQKQGNWVPYELKPRDIGRRFCMSEML
FT                 LERYKKKSFLHRIITGDEKWIHYDNPKRKKSYVKPGQPGTSTPKPNIHGAK
FT                 VMLCIWWDQKGVIHYELLKPGQTITGDFYRQQLIRLKRAIAEKRPEYATRH
FT                 ESIIFHHDNARPHVAVPVKNYLENSGWEVLAHPPYSPDLAPSDYHLFRSMQ
FT                 NALTGIRFTSEQGIKNWLDSFLASKDERFFRDGIHKLPERWEKVVASDGQY
FT                 FE"
XX
SQ   Sequence 1288 BP; 405 A; 259 C; 289 G; 335 T; 0 other;
     ttgggtgtac aacttagttc ggtccgtttt caaaagatgg ctctaggtgc tataaatggt        60
     tgacggcgac agctgatttt tgctgtatcg tgaagtgtca acatctgtca accaaatatt       120
     gtttacaagc ctttgagttt tgcacaacaa gtttaatttt tactgcgttg aaaatgtcga       180
     gtttcgttcc aaataagcac catttgcggg aagttttgat tttctgtttc aattggaaga       240
     aaagtgcagc tgaagcgcat cgaatgcttg tggaagtgta tggtgaatct gcaccatcgg       300
     ataaatcttg cagagaatgg tttcgacgat ttaaaagtgg tgattttagt gttgaagaca       360
     aagagcgttc gggtcaaccg aaaaagtttg aagatgaaga attagaaaca ttactcgatc       420
     aagattcgtg tcaaacgcaa gaagagctcg caaaaacatt ggaagttact caacaagcta       480
     tttcgaaacg actcaaagcc gcgggataca tccaaaagca aggaaattgg gtcccatacg       540
     aattgaaacc gagagatatc ggacgacgat tttgcatgtc cgaaatgttg cttgaacggt       600
     acaaaaagaa gtcttttctg catcgaatca ttaccgggga cgaaaaatgg attcactacg       660
     acaacccgaa acgcaaaaaa tcgtatgtaa agcccggcca accgggaaca tcaacgccga       720
     agccgaatat ccatggtgcc aaggtaatgc tctgtatttg gtgggatcag aagggtgtga       780
     tccactatga gctgctaaaa cctggtcaaa ccatcacggg agacttctac aggcaacaat       840
     tgatccgttt aaagcgagct atagccgaaa aacgtccaga atatgcgacc agacacgagt       900
     ccataatctt tcaccatgac aacgctcggc ctcatgttgc tgttccggtt aaaaactatt       960
     tggaaaatag cggatgggaa gttctggctc acccgcctta tagcccagac cttgcccctt      1020
     ccgactacca tttgtttcga tcgatgcaga acgctttgac tggaatacgc ttcacttcag      1080
     aacagggtat caaaaattgg ctcgattcat tcttggcttc aaaagatgaa cgcttcttcc      1140
     gcgacggaat ccataaattg ccagaaagat gggaaaaagt agtggctagc gatggacaat      1200
     actttgaata aggtattaat tcattttatc gttcaaataa atgcgttttt caagcaaaaa      1260
     aacggaccga attaagttgt acacccaa                                         1288
//
ID   Mariner-2_TCa repbase;    DNA;    INV; 905 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-2_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-905
RA   Jurka J.;
RT   "Mariner/Tc elements from insects.";
RL   Repbase Reports 9(3), 675-675 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 905 BP; 311 A; 151 C; 187 G; 256 T; 0 other;
     cgagggcaag gtgagaaatt ctcggcctac cacagaatta acattgttat caataaaatt        60
     tttatgcggg agcaagtcat catgtgtcat aatagcatcc ctcaagtttc gtcttaatct       120
     gacaaatagt tttttttgag cattttttaa agtaaaggtg catgtctgtt ttgaacaatg       180
     gataaaatgg agaatttcgc cgtcattaaa ttctttgttt tggagggctt attgccaaca       240
     gaaatttatc caaagttggt gagagtttat aaagagtcaa cctcttcata ttctactgta       300
     aaaaatggcc agctgaattc gaacgtggtc gcacatctct caatgatgag ttttgtgaag       360
     gacgaccaaa aacagtaacc acggatgaaa acctcaaaaa aatgcacaat ttggtattgg       420
     atgatcggcg aatgaaagtg tatgagatag ctaaggtcgt agggatatct gagaaaaggg       480
     tgtagtttat tttgcaccaa gaattagata cgaaaaaatt gtgtgcaaaa gggtgccgca       540
     tgggtccaat gcacctgccc acaaaggcgc tctggcaatg gaaaaattga gggatttaaa       600
     acatgaatta ttagaacatt cttcatattc gcctgatttg acttccccag acttccacca       660
     accacaaatt aaaaaaaaat tgtggttagg aaaaattatc actcgaatga ggaggtgatt       720
     gcggctgtaa acaagtattt tgcagaccta ccagaaagtc acttcaggga tgggattaaa       780
     aaattagaaa cacattgcac taagtgcgtt gaactaaata gagattatac aaaaaataaa       840
     tgcatatttg aattaaaaaa cgaagtcttt cattgttagg ccgagaattt ttcacctcgc       900
     cctcg                                                                   905
//
ID   Mariner-30N1_LMi repbase;    DNA;    INV; 818 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-30N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-818
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3272-3272 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 818 BP; 226 A; 178 C; 170 G; 244 T; 0 other;
     ccgggtgatc aaaaagtcag tataaatttg aaaacttaat aaatcacgga ataatgtaga        60
     tagagaggta aaaattgaca cacatgcttg gaatgacatg gggttttatt agaacaaaaa       120
     aaaaaaaaag ttcaaaaaat gtccgacaga tggcgctgga cagcaaaacg tcagtgactg       180
     ctaccgtgac gggtgagagg tacgccgata tgttacagaa tcgcatcatc cccagcctgg       240
     ctgataaaca cctgctggaa cgtacgattt ttatgcagga tggcgctcca ccccatattg       300
     ctagacgcgt gaaagatctc ttgcgcgcgt cgtttggtga tgatcgtgtg ctcagccgcc       360
     actttcgtca tgcttggcct cccaggtccc cagacctcag tccgtgcgat tattggcttt       420
     ggggttacct gaagtcgcaa gtgtatcgtg atcgaccgac atctctaggg atgctgaaag       480
     acaacatccg acgccaatgc ctcaccataa ctccggacat gctttacagt gctgttcaca       540
     acattattcc tcgactacag ctattgttga ggaatgatgg tgaacatatt gagcatttcc       600
     tgtaaagaac atcgtctttg ctttgtctta atttgttatg ctaattattg cttttctgat       660
     cagatgaagc gccatctgtc agacattttt tgaacttttt tttgttctaa taaaacccca       720
     tgtcattcca agcatgtgtg tcaattttta cctctctatc tacattattc cgtgatttat       780
     taagttttca aatttatact gactttttga tcacccgg                               818
//
ID   Mariner-30_AEc repbase;    DNA;    INV; 1322 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.03, Created)
DT   15-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-30_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1322
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 576-576 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1265
FT                 /product="Mariner-30_AEc_1p"
FT                 /translation="MDQRICIKFCVKNKIKCADAFRMLTVAYGEATLDRSN
FT                 VYRWYKMFSEGREDVNDEERAGRPSTSTTDENIDEVKKIVLANRRITVREV
FT                 AEDLNISIGSCHSIFTNDLGMRRVAAKFVPKLLNFDQKQHRINIAKELLDS
FT                 VRDDPNVLQRVITGDESWVYGYDVETKAQSSQWKLPHEPRPKKARQVRSNV
FT                 KVLLTVFFDCKGVVHHEFLPQGRTVNKEYYLQVMRNLREAIRQKRPDLWKN
FT                 KNWLLHHDNAPAHTSLLVREFLAKNNTLMMPQPPYSPDLAPCDFFLFPKLK
FT                 RPMKGRRYATIEEIKTASKEELNKITKNDFLKCFEDWKKRWHKCIISDGDY
FT                 FEGDKIDIHE"
XX
SQ   Sequence 1322 BP; 390 A; 270 C; 314 G; 348 T; 0 other;
     cgaggtctgt tcaaaaagta tcgcgaattt tgaatttccg cgggttacgt atattcgatt        60
     ttcgattttt ttgtggcgtt atgttggtac tcatgtctct cacttatgcc gacaagttcg       120
     gccattttga atgttcagtt aatttttgac agctgctttg cttgcacgtg ttttggctcg       180
     tcttcgattt ttgcctattc caaaaaatgg atcaaagaat ctgtatcaaa ttttgtgtga       240
     aaaacaaaat taagtgcgcg gacgcattcc gaatgttgac tgtggcatat ggtgaagcta       300
     ccttggaccg aagcaacgtt tatcggtggt acaaaatgtt ctcagagggc cgagaagatg       360
     tgaacgacga agagcgtgcc ggacgcccga gcacgtcaac aacagacgaa aacattgatg       420
     aagtgaagaa aatagtattg gccaatcgtc gaatcaccgt tagagaagtt gctgaggacc       480
     taaacatatc gattggctca tgccattcga tttttaccaa tgatttgggc atgagacggg       540
     tcgccgcgaa attcgtacca aaattgctca atttcgacca aaaacagcat cgcattaaca       600
     ttgctaagga gctgttggac tctgtccgcg acgacccaaa tgtgctccag agggtcataa       660
     ctggtgacga atcatgggtt tatggttatg acgtggaaac caaagctcaa tcatcccaat       720
     ggaagctgcc gcacgagcca agaccgaaaa aagcgcgcca agttcggtcg aatgtgaagg       780
     ttttgcttac agttttcttc gattgcaagg gcgtggtgca tcatgagttc ttgccacagg       840
     gtagaacggt caataaggaa tattacctgc aagttatgcg caatttgcgc gaagcaatcc       900
     gccagaaacg cccggatttg tggaagaaca aaaattggct tttgcaccat gataacgccc       960
     ctgctcacac atcgttgctt gtgcgcgaat ttttggccaa aaacaacaca ctaatgatgc      1020
     cgcagccacc gtattcccca gatctggccc cctgtgactt tttcttgttc ccgaaactga      1080
     agaggcccat gaaaggacga cgctacgcta cgattgagga gataaagacg gcatcgaagg      1140
     aggagctgaa caagatcaca aaaaatgatt ttttgaagtg cttcgaggat tggaaaaaac      1200
     gttggcacaa gtgtataata tctgatgggg attactttga aggggacaaa atagatattc      1260
     atgaataaat aaataatttt tgaaaaaaca caaaattcgc gatagttttt gaacagacct      1320
     cg                                                                     1322
//
ID   Mariner-30_DF repbase;    DNA;    INV; 1666 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-30_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1666
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 797-797 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs. 778-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1666 BP; 537 A; 293 C; 289 G; 547 T; 0 other;
     cactgccgct caactgaata ggttcatgat ctcagaggaa gtaatttgtc tataattcct        60
     aaaccagtgt accgatttcc ataatttttt tttctttaac tcttgaatca ttttataata       120
     aaatgctgaa gaaggttttt caaaaacata ttatttattc cttatttaat ttttcttctg       180
     aaaggttaac caaattcatg gttttttttg ggtcatctga ataggttcaa cctaaaacaa       240
     ttaaaattat ttaagtaacc gaggataatt ttcatatttt ttgaacttgg ctgatactta       300
     tgaacatttt tagagtacat tttactaatt ttaataaaaa gtgaaccctc cgttgtccga       360
     tataacatca tatacacgac cgggaagcga gctatacaaa ttgtgcagta tttgcagtga       420
     aatggttgtc caggctattt taattgcctt aactaaagtt gttttgcaag aaaattacct       480
     gcctccttca tatatcttgc gcgatagcaa cccccatacg atttcgatta tattaaggtc       540
     aggtgaatat gggggccatt caagtaagtc cacattttga gccttaatcc actcttttac       600
     caccctagct gtatgatggg agcgttatcc tgctggtaag accatttgat aaagtgaaaa       660
     gtatttgaat aatcaggaaa cgcagccttt atgatagatt tgtaggtttc cgcgctcgtt       720
     ttgcaagtaa caaattaaag gtcgcaagtg ccaaagactg ataccgaccc ccacaccatt       780
     accccaccct cacagctatg tcgacggcta aggaaatgct cttcctttcg aagatcgtga       840
     taataatagt tgtagctatt gatttacgct tctaaattaa attgattttg gtgtgggggt       900
     cggtatcagt ctttggcact tgcgaccttt aatttgttac ttgcaaaacg agcgcggaaa       960
     cctacaaatc tatcataaag gctgcgtttc ctgattattt aaatactttt cactttatca      1020
     aatggtctta ccagcaggat aacgctccca tcatacagct agggtggtaa aagagtggat      1080
     taaggctcaa aatgtggact tacttgaatg gcccccatat tcacctgacc ttaatataat      1140
     cgaaatcgta tgggggttgc tatcgcgcaa gatatatgaa ggaggcaggt aattttcttg      1200
     caaaacaact ttagttaagg caattaaaat agcctggaca accatttcac tgcaaatact      1260
     gcacaatttg tatagctcgc ttcccggtcg tgtatatgat gttatatcgg acaacggagg      1320
     gttcactttt tattaaaatt agtaaaatgt actctaaaaa tgttcataag tatcagctaa      1380
     gttcaaaaaa tatgaaaatt atccttagtt acttaaataa ttttaattgt tttaggttga      1440
     acctattcag atgacccaaa aaaaaccatg aattttgtta acctttcaga agaaaaatta      1500
     aataaggaat aaataatatg tttttgaaaa accttcttca gcattttatt ataaaatgat      1560
     tcaagagtta aagaaaaaaa aattatggaa atcggtacac tggtttagga attatagaca      1620
     aattacttcc tctgagatca tgaacctatt cagttgagcg gcagtg                     1666
//
ID   Mariner-30_HSal repbase;    DNA;    INV; 914 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-30_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-914
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 870-870 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           195..707
FT                 /product="Mariner-30_HSal_1p"
FT                 /translation="MSKNMEQRICLKFCVANEISFTNAFKMLQKAYGDDCL
FT                 SKTSTFEWFKKFQEGRESVEDDPRSGRPSTSTDDAHIEKVKELVLQNRRLT
FT                 VREIADEVGISFGSCQHILSNVLDMKRVASRLIPKNLNFLQNFLQKLNECR
FT                 SASTVFTRHGPLRLFPVPPTEKTTSRTAFRID"
XX
SQ   Sequence 914 BP; 276 A; 174 C; 202 G; 262 T; 0 other;
     ctactgtgat caaaaagtat ccgaacttta ttttttaaaa atcgcgggta aactgtaaat        60
     caaatccgtt tgctttctta agttggtaca catgtccttc acatttggtg aaaaaatcat       120
     ggcgttcctt caagccgttt gaaagtggca gttgtttatg tcagtgaaga ttgttgtgca       180
     cggcgatttt tacgatgtcg aaaaatatgg agcaaagaat ttgtttgaaa ttttgtgttg       240
     cgaacgaaat ttcgttcaca aacgcattca aaatgttgca aaaagcttat ggcgatgatt       300
     gtttatcgaa aacaagtacg tttgagtggt ttaagaagtt tcaagaagga cgagaatccg       360
     ttgaagacga cccacgctct ggaagaccat caacgtcaac ggatgacgct cacattgaga       420
     aagtgaaaga attggtgctc caaaatcgtc gattgactgt gcgagagata gcagatgaag       480
     ttggaatatc atttggatcg tgccagcaca ttttgtccaa tgtactggac atgaaacggg       540
     tcgcatcgcg cttgattccg aaaaacctga attttctcca aaattttctc caaaaactca       600
     acgaatgtcg ctccgcaagc accgtattca ccagacatgg ccccctgcga ctttttcctg       660
     ttccccctac tgaaaaaacc acttcgcgga cagcgtttcg aatcgattga ggacatcaaa       720
     gaaaaatcgc tgcgtgaatt gaaggccata ccgtctgccg cgtatgagcg atgtttccag       780
     gactggatca aacgctggca tatgtgcgtt gcaagcaatg gggactactt tgaaggagac       840
     tataagaatt ttgatgattg aattgtaatt ttgattttta aaaataaagt tcggatactt       900
     tttgatcaca gtag                                                         914
//
ID   Mariner-30_LMi repbase;    DNA;    INV; 1558 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1558
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3273-3273 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           205..1344
FT                 /product="Mariner-30_LMi_1p"
FT                 /translation="MRERIRCTSSRSMLTLPEKALLVKLYYQNGECASSAL
FT                 RSYRHRKGIRTGKGPLTNAAVARMISKFEATGCLDDRPRSGRPSTRRNAAE
FT                 TVQEEMETVAGSSMHGEVSARAVARRTGIPYTTVWLALRRTLRCYPYKIHR
FT                 HHELLPGDLVKRRAFAVWAFQKMAEDDDWLSNVLWTDEAHFTLRGSVNAHN
FT                 CRIWATENPRTVVETPLHDEKVTVWVGFTTSTVIGPFFFEELRDSGFVTAT
FT                 VTGERYADMLQNRIIPSLADKHLLERTIFMQDGAPPHIARRVKDLLRASFG
FT                 DDRVLSRHFRHAWPPRSPDLSPCDYWLWGYLKSQVYRDRPTSLGMLKDNIR
FT                 RQCLTITPDMLYSAVHNIIPRLQLLLRNDGEHIEHFL"
XX
SQ   Sequence 1558 BP; 410 A; 337 C; 385 G; 426 T; 0 other;
     ccgggtgatc aaaaagtcag tataaatttg aaaacttaat aaatcacgga ataatgtaga        60
     tagagaggta aaaattgaca cacatgcttg gaatgacatg gggttttatt agaacaaaaa       120
     aagttcaaaa aatgtccgac agatggcgct ggacagcaaa acgtcagtga ctgcgcatga       180
     aaatcgtgta taaaaggagc tgtaatgaga gagagaatca gatgcaccag cagtcgcagc       240
     atgttgacgt tacctgaaaa ggcgctttta gtgaagctgt attatcagaa tggggaatgt       300
     gctagttcag cgttacgatc ctatcgccat aggaagggga ttcgaacggg taaaggtccg       360
     ttgacaaatg cagctgtggc gagaatgatt tcgaagttcg aagccacggg ttgtttagac       420
     gatagacccc gtagtggccg accgagcaca aggcgtaatg ctgctgagac agttcaggaa       480
     gaaatggaga ctgtagcggg ttcgtctatg cacggggaag tcagcgctcg tgcagtcgca       540
     cgtcgcaccg gcattccata cactactgtt tggttggcac ttaggcgtac cctccgatgc       600
     tatccttaca aaatccatcg gcatcatgaa ctgttacctg gcgatttagt gaagcggagg       660
     gcatttgcgg tgtgggcgtt tcaaaagatg gcggaagatg acgattggtt gagtaacgtg       720
     ttgtggaccg acgaagctca tttcacgctc cgagggtctg tcaacgccca caactgcaga       780
     atttgggcta ccgaaaatcc tagaactgtc gtggaaactc cattgcacga cgagaaagtc       840
     acggtatggg ttggatttac cacatctacc gttatcgggc cttttttctt cgaggaactg       900
     cgtgattctg gttttgtaac tgctaccgtg acgggtgaga ggtacgccga tatgttacag       960
     aatcgcatca tccccagcct ggctgataaa cacctgctgg aacgtacgat ttttatgcag      1020
     gatggcgctc caccccatat tgctagacgc gtgaaagatc tcttgcgcgc gtcgtttggt      1080
     gatgatcgtg tgctcagccg ccactttcgt catgcttggc ctcccaggtc cccagacctc      1140
     agtccgtgcg attattggct ttggggttac ctgaagtcgc aagtgtatcg tgatcgaccg      1200
     acatctctag ggatgctgaa agacaacatc cgacgccaat gcctcaccat aactccggac      1260
     atgctttaca gtgctgttca caacattatt cctcgactac agctattgtt gaggaatgat      1320
     ggtgaacata ttgagcattt cctgtaaaga acatcatctt tgctttgtct taatttgtta      1380
     tgctaattat tgcttttctg atcagatgaa gcgccatctg tcggacattt ttgaactttt      1440
     tttgttctaa taaaacccca tgtcattcca agcatgtgtg tcaattttta cctctctatc      1500
     tacattattc cgtgatttat taagttttca aatttatact gactttttga tcacccgg        1558
//
ID   Mariner-30_RPr repbase;    DNA;    INV; 1326 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-30_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1326
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3277-3277 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to the consensus.
XX
SQ   Sequence 1326 BP; 394 A; 300 C; 321 G; 311 T; 0 other;
     tacgaggcat gtccagaaag taagtgtact gaggctctca cggccggagg gatttttttt        60
     tcgacatgtt ggctacactg ccgtgtagcc tgattcctcc cctccgcaac gagaccggtt       120
     cgaggtcagt acgttgagaa ctgtcgacgc gacaataggt ttcgtgaaaa atgtcaatcc       180
     aatctcccgc caagtgcgaa atacgcggcg tcatccgtta tctcgtttgg aagggaaaaa       240
     ctccggttga ggtttataat gaggtaaaaa ctgcatatgg tgataaagct atgaatcgta       300
     cgagtgtgtt caagtggtgt caagcgagtt taaaaacggt cgtacgtctg tgcatgatga       360
     tcagaggagc ggaagacctt caattgtgac tgacgaaatt gtggaaaaaa tcgaaaatgc       420
     gctccgtgac gatcgcagat tgactgtgga tgaactttct gcgatgtttc cgcaaatctc       480
     cagatctctg ctacacgaaa ccatcacaga aactctcgga tatcggaaac tgtccgcgag       540
     gtgggtccca aaacaactga cagaccaaca caagttgaat cgagtggagg ccgggcaaga       600
     gtttttgaga cgctacaaac tccatggaga tgaatttctc cgctccattg ttactggaga       660
     tgaaacttgg gttgcacact acacacctga aaccaaaagg cagtctcaac agtggcgcgt       720
     cacacctctt caccctccgc caaaaagttc aaaaccacaa tttcagccaa gaaaatcatg       780
     gcatccgtgt tttgggactg tcaaggcata attttaattg aatatatgcc tcaaggggag       840
     accatcaact ctgcaagata ctgtgagacc ctaaaaaaat tgcggagggc gattcagaac       900
     aagagaagag gcatgctgac aaagggcgac aatgccagac ccacacacgg ccaatgccac       960
     gaaggaactg ctcgcctcgt ttaaatggga tgtcctgaac catcccgcgc attcccctga      1020
     cctagcacct tcagattact atctctttac ctccctgaag ctgcacatgg gtggaaaaag      1080
     gttttcaacc gacgaggagg tgaaggggga ggtggagaag tggacgaagg ggttggcggg      1140
     aaactacttc gaggaaggca tcaaaaaatt aataccccgg ttcaccacct gcattgagag      1200
     gaatggtgac tatgtcgaaa aatagcttac atatgtacta atgtaaccag gtaatgtttt      1260
     tgttcaaata aacatttttg taacctacaa aaattcagta cacttacttt ctggacatgc      1320
     ctcgta                                                                 1326
//
ID   Mariner-30_SIn repbase;    DNA;    INV; 600 BP.
XX
AC   .
XX
DT   18-APR-2012 (Rel. 19.02, Created)
DT   18-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-30_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-600
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 394-394 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 600 BP; 178 A; 113 C; 149 G; 159 T; 1 other;
     ttaggagtac aaattgaaaa ccgccgtttt ccagtagatg gcgccagcgg taaatgctgg        60
     cgccaaacgt tagatcaaaa attttaaatg taaggttggg catctggcaa caattcctta       120
     tcattgcagt tgtgaatttt tatcggcgtt atatattttt ttgtgatcga aaatgtcgaa       180
     atttgtgccc aataagcgtc atttgcggga agttttgctt tttgccttca attcgaaaaa       240
     atctgcggct gaggcgcgtc gaatgattgt aaaaacttat ggtgaggctt ccattagtga       300
     aagaacgtgt cgagaatggt tccaacgctt caaaagtggt gatttcggcg tagaagacaa       360
     ggagcgtccc ggacaggtga aaaagtttga agacgcacaa ttggaaacat tactggaatg       420
     aagattcatc tcaaacgcaa caggagcttg cagattcatt gggcgtgact caacaagcta       480
     tttcacatcg tttgaaaacc atgggaatga tccaaaagca tggacactgg gtgccatacg       540
     aattaaagcc gagagacgtc gaacggcgtt wtttcgcgtg cgaacagctg ctccaacggc       600
//
ID   Mariner-31_AEc repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.03, Created)
DT   15-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-31_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 577-577 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-31_AEc_1p"
FT                 /translation="MSNFVPNKPFLRGILLHYFIQKKSAAEAHRILVETYG
FT                 DHALSERTCRDWFNRFKNGDFNLQDRERSGASKKFRDEELETLLDEDPCQT
FT                 QSDIAKLLGVDRTTVSKRLSALGMIQKEGSWVPYELKPRDIERRIVTCEQL
FT                 LQRQKRKGFLHRIVTGDEKWIYYSNPKRKKSWVKPGEAVASTPKRNIHGSK
FT                 LMLCIWWDQLGVVYYELLQPNQTITGDLYRRQLMRLSRALKEKRPQYEQRH
FT                 DKVILLHDNARPHVAAPVKTYLETLKWEVLPHPPYSPDIAPSDYHLFRSMT
FT                 HGLSEQQFSSYENTKNWIDSWIAAKEVSFFRRGIQMLPERWDKVVSSDGQY
FT                 FN"
XX
SQ   Sequence 1288 BP; 404 A; 256 C; 282 G; 346 T; 0 other;
     ttgggagtgt gaataagttc tcgccgtttc accatcagat gcggtataaa aagtttgtgt        60
     gtataattaa agatgatgac gcctctatat tgaagttcta taacctatgt ttaaaatcag       120
     tgcgtgtctt tcctttaacc tataaagaac attttctttt cgtaccataa aacatgtcaa       180
     atttcgtgcc aaataaaccg tttttgcggg gaattttact gcactatttt attcagaaga       240
     aatctgcagc tgaagcgcac agaattcttg tagaaaccta tggtgatcat gctttgtcgg       300
     aaagaacatg cagagattgg tttaaccgat ttaaaaatgg tgattttaat cttcaagata       360
     gagaacgcag tggtgcatca aaaaagtttc gagacgaaga actggaaaca ttacttgatg       420
     aagatccatg tcagacgcaa tccgacattg caaaattatt aggagttgat cgaacaacag       480
     tttcaaaacg tctgtcagca ttaggaatga tacaaaagga aggatcttgg gtgccgtacg       540
     aactgaagcc gagagacatc gaacggcgta ttgtcacgtg tgaacagctg cttcaacgac       600
     aaaaaaggaa aggtttttta catcgtattg tcactggtga tgaaaagtgg atatactaca       660
     gtaatccgaa gcgtaaaaaa tcgtgggtta agcccggcga agcagtagca tcaacgccaa       720
     agcggaatat acacggttcc aagctcatgc tctgcatttg gtgggatcag ctgggggtag       780
     tgtactacga gctgctccaa cccaaccaaa ccatcacagg agatctctat cgacgacaat       840
     tgatgcgttt gagccgagca ttaaaagaaa aacggccgca atatgagcaa agacacgata       900
     aggttatttt gctgcatgat aacgctcggc cgcatgtcgc ggcaccggtc aaaacatacc       960
     tggaaacgct gaagtgggag gtcctacccc acccgccgta ttcaccagac attgcgcctt      1020
     ctgattacca tctatttcga tcgatgacgc acggcctgtc tgagcagcag ttctcatcat      1080
     acgaaaatac caagaattgg atcgattcgt ggatagccgc aaaagaagtg tcgttttttc      1140
     gacgtggaat tcaaatgctg ccagaaagat gggacaaagt tgtctccagc gatgggcaat      1200
     actttaattg acttgttctt ttattatttt ttttttataa aagatttatt ttcacaaaaa      1260
     aacggcgaga acttattcac actcccaa                                         1288
//
ID   Mariner-31_HSal repbase;    DNA;    INV; 1276 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-31_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1276
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 871-871 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(173..619,541..1197)
FT                 /product="Mariner-31_HSal_1p"
FT                 /translation="MDRTKLHFRHSLLFLFDLKKSATEAHEMLVTTYGDQA
FT                 PSYSNCKFWFQRFKSGDFDLSDKERTGQPKKFEDSELQALLNENTAQTEKQ
FT                 LAEQLNVDKSTISKRLHAMGKIQKEGKWVPHELSESAIANRLNIAMSLLAR
FT                 QKKRVFCGELKCHCKSFEYRHVFACQTEKKSFLWRIVTGDEKWIYFDNPKR
FT                 KKSWVDPGQPSTSTPKRNIHGHKAMLCIWWDMEGVVYYELLKPNETVTGER
FT                 YQQQLNKLNDELMQKRPAIASNRRKVILLHDNARPHVASIVKQTLLELEWE
FT                 ILPHPAYSPDLAPSDYHLFRSMQHALADTHFNNYEDVQKWVSDWIASKDRS
FT                 FYRRGIAMLPERWEKVTANDGKYFD"
XX
SQ   Sequence 1276 BP; 438 A; 230 C; 256 G; 352 T; 0 other;
     ttaggaggtt gaattagttc tggtccctag caatagatgg ctttagtaac aagttaatgg        60
     ttagtacgaa tgttgaaatc tggcaacact gaaagatttg acatttctct atgacatatg       120
     acagtttgcg cgctattgtt actgatagtt tcattgttta tacgcgtcta aaatggatcg       180
     tacaaaattg cattttcgac attcattact ttttttgttt gatttgaaaa aatcggcaac       240
     tgaagctcat gaaatgcttg ttacaactta tggtgatcaa gctccatcgt attccaactg       300
     taaattttgg tttcaacgat tcaaaagtgg tgatttcgat ttgagtgaca aagaacgtac       360
     tggtcaacca aaaaaattcg aagattctga attgcaagca ttattgaatg aaaacaccgc       420
     tcaaacggaa aaacaattgg ctgaacaact caacgtcgat aaatcaacaa tttctaaacg       480
     cctacacgcc atgggaaaaa ttcaaaagga aggcaaatgg gttccacatg aattgagtga       540
     aagtgccatt gcaaatcgtt tgaatatcgc catgtctttg cttgccagac agaaaaaaag       600
     agttttttgt ggcgaattgt aactggagat gaaaagtgga tttattttga taatccaaag       660
     cgaaaaaaat catgggttga tccaggacaa ccatcaacat cgacaccaaa acggaacatt       720
     cacggtcaca aagcaatgct ctgtatttgg tgggatatgg aaggtgtggt gtactatgag       780
     cttctaaaac cgaatgaaac agttacgggg gagcgatacc agcaacaatt gaacaaattg       840
     aatgatgaat tgatgcaaaa aaggccagcg atagccagca atagacgcaa agtgattctt       900
     ttgcacgata atgctcgtcc acatgttgct tcaatcgtta aacaaacatt gttagagctc       960
     gaatgggaaa tccttccgca cccagcgtac tctccagacc tagcaccatc tgattaccat      1020
     ctattccgat cgatgcaaca cgctttggca gatacacact tcaataatta cgaggatgtg      1080
     caaaaatggg tgtctgattg gattgcttcg aaagacagat cgttctatcg tcgcggaatc      1140
     gctatgttgc cagaaagatg ggaaaaagtc acagctaacg acggaaaata ttttgattga      1200
     tgtaaattta accatttctt taaaataaag ataaaaaaat tgacaaaata agaccagaat      1260
     taattcaacc tcctaa                                                      1276
//
ID   Mariner-31_LMi repbase;    DNA;    INV; 1213 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1213
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3274-3274 (2014).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..1212
FT                 /product="Mariner-31_LMi_1p"
FT                 /translation="MGFRSRRPTRVPLLTARHKALRLAWARQHRHWTVDDW
FT                 KHVAWSDESRFQLYRADGRVRVWRQPHESMDPACQQGTVQAGGGSVMVWGV
FT                 CSWSDMGPLIRLDTTLTGDTYVRILADHLHPFMSIVHSDGLGQFQQDNATP
FT                 HTSRIATEWLQEHSSEFKHLRWPPNSPDMNIIEHIWDALQRAVQKRSPPPR
FT                 TLTDLWTALQDAWCQFPPALLQTLVESMPRRVAALLRARGALHDIRQVYQF
FT                 LWLFS"
XX
SQ   Sequence 1213 BP; 300 A; 314 C; 322 G; 277 T; 0 other;
     cactgaagag ccaaagaaac tggtataggc atgcgtatgc aaacacagag atatgtaaac        60
     actcagagga cggcgctgcg gtcggcaacg cctatataag acaacaggtg tctggcgcag       120
     gcgttagatc ggttactgct gctacaatgg caggttatca cgatttaagt gagtttgaac       180
     gtggtgttat agtcggcgca cgagagatgg gacacagcat ctccgaggta gcgatgaggt       240
     ggggattttc ccgtacgacc atttcacgag tgcaccgtga atatcgggaa tccggtaaaa       300
     catctccgac atcgctgcgg ccggaaaaag atcctgcaag aacgggacca acgacgactg       360
     aagagaatcg ttcaacgtga cagaagtgca acccttccgc aaattgctgc ggatttcaat       420
     gctgggccat caacaagtgt cagcgtgcga accattcaac gaaacatcat cgatatgggc       480
     tttcggagcc gaaggcccac tcgtgtaccc ttgctgactg cacgacacaa agctttacgc       540
     ctcgcctggg cccgtcaaca ccgacattgg actgttgatg actggaaaca tgttgcctgg       600
     tctgacgagt ctcgtttcca attgtatcga gcggatggac gtgtacgggt atggagacaa       660
     cctcatgaat ccatggaccc tgcatgtcag caggggactg ttcaagctgg tggaggctct       720
     gtaatggtgt ggggcgtgtg cagttggagt gatatgggac ccctgatacg tctagatacg       780
     actctgacag gtgacacgta cgtacgcatc ctggctgatc acctgcatcc attcatgtcc       840
     attgtgcatt ccgacggact tgggcaattc cagcaggaca atgcgacacc ccacacatcc       900
     agaattgcta cagagtggct ccaggaacac tcttctgagt ttaaacacct ccgctggcca       960
     ccaaactccc cagacatgaa cattattgag catatctggg atgccttgca acgtgctgtt      1020
     cagaagagat ctccaccccc tcgtactctt acggatttat ggacagccct gcaggatgca      1080
     tggtgtcagt tccctccagc actacttcag acattagtcg agtccatgcc acgtcgtgtt      1140
     gcggcacttc tgcgtgctcg cggggcccta cacgatatta ggcaggtgta ccagtttctt      1200
     tggctcttca gtg                                                         1213
//
ID   Mariner-31_RPr repbase;    DNA;    INV; 1567 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-31_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1567
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3278-3278 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..1230
FT                 /product="Mariner-31_RPr_1p"
FT                 /translation="MPRKYQRKTNIGNWTADQLLQAISAVKRGIAIREAGR
FT                 EYGIPEATIRKRMKLGDAEESTKGPNMGKSPIFSEQQEKELSEHVLNLAKM
FT                 FYGMTSIQFRKLAFAYAEANNIKHSFNINRKMAGKDWYYQFLKRHPEISLR
FT                 KPEIKKNRRRRAVEERLKNKVKSKASLTKKRYRLKKILNSDSSSEEEVDVN
FT                 QLCDDDELDDLPSEDNEKCVICDDFSRKNELWYRCTQCSRWAHALCSGWDT
FT                 PENYVCDFCDH"
XX
SQ   Sequence 1567 BP; 507 A; 264 C; 318 G; 478 T; 0 other;
     taggggagag tggggtaatc gtacgcgatg ggtaatcgtg cgcattgaga tatgcaacaa        60
     taagactgat tttggctaat aatgtcggtg ctgttctcta tcctttagtc ttggaaacat       120
     aaatatgaca agcagtacag gtagcgcatt taacacatga attattggcg cgcaaaggtt       180
     ttgtgttggt tacgtctaag ttcttcccgt gcaaagttaa gccgtaagtt ggaattatat       240
     aattattatt atttaaagta tatgtcattg aaaagatcca ctctagggtc tatgatccat       300
     ctttgttaaa ttccattatc tttttttaaa catatttctt cactgttaat tgtataggtt       360
     atgctatcgg ggtaactgtg cgcaatattg taggggtaac cttgcgcgcg tacgactacc       420
     ccgacaacat ttctttaaaa caataagtaa tataaattat tttgcttcta ttagatgcca       480
     cgcaagtacc agagaaaaac caatattggt aactggaccg ctgaccagtt acttcaagcg       540
     atctcagcgg taaagagggg tattgccatt agagaagcag gcagggaata tggtattcct       600
     gaagctacca taaggaagag aatgaagctt ggggatgctg aagaatcaac aaagggtccc       660
     aatatgggaa aatctcctat tttttctgag cagcaagaaa aggaattatc cgaacatgtg       720
     ctgaatcttg ctaaaatgtt ttatggaatg actagcattc agttccgtaa actggctttt       780
     gcctacgctg aggctaacaa cattaaacac agttttaata taaacagaaa aatggccggc       840
     aaagactggt actatcagtt tttaaaacga catccagaaa taagtctccg caaacctgag       900
     attaaaaaaa acagaagacg tcgtgcggtt gaagaacgat taaaaaataa agtgaaatca       960
     aaagcatcct tgacaaaaaa acgttatagg ctcaagaaga ttttaaacag cgacagttca      1020
     tcagaagaag aagttgatgt gaatcaacta tgcgatgatg atgaactgga cgatttgccg      1080
     tcagaggata acgagaagtg tgtaatatgt gacgattttt ctcgaaaaaa tgagttatgg      1140
     tatagatgca cacaatgttc tcgttgggca catgctctat gttctggttg ggatacacct      1200
     gaaaattatg tgtgcgattt ttgtgaccac taaaaatata attcattact tgtatataat      1260
     ataattactt gttcaaggta ttgttttttc attgtttttc cattcataca aatgccacag      1320
     taatgcgtac agttacccga ctattgcgta cagttacccc atataggatg ggtaagggtg      1380
     cgcagtgcag cttttaggcg aaaaaaatat aggtctttat taacttactt ttgatagtct      1440
     tactcctcag acaatataaa caaagctttt ttcaactcac aaaaaaatcc tggatgtttt      1500
     tacatgttcg ctgaattttt tattattttt ttggggaaaa tgcgcacagt taccccactt      1560
     tccccta                                                                1567
//
ID   Mariner-31_SIn repbase;    DNA;    INV; 2686 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.02, Created)
DT   20-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-31_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2686
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 395-395 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. ~370bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           822..1883
FT                 /product="Mariner-31_SIn_1p"
FT                 /translation="MADYSPNEIVDIILVLGECHSNYNAASRLYAQRFPER
FT                 RHPTDMTIRSLVQRARNGHLVRQRQHHEYEENDARAVTILAILHLNPHVST
FT                 RQIEREIGIPQRTVVRILRALNYHPFHITLTQALQPNHHLMRIAFCQWALQ
FT                 MLHDDPNFFRYVLFSDEAKFYSDGQLNRHNCHYWSDVNPHWYRPIDHQNRW
FT                 SIMVWCGIVNGYLIGPYFFEENVDRHSYLSLLRDHLPGLLEDVDLATRARM
FT                 WLQQDGAAPHYALIVRAFLNASYNDRWIGRRGPVEWPPCSPDLTSPDFFLW
FT                 GYLKNVVFAERPTTRDDFMDRIRRACAAIPRATLLRTVDSFQNRLQLCLEA
FT                 NGGNFEQLLRG"
XX
SQ   Sequence 2686 BP; 816 A; 529 C; 544 G; 793 T; 4 other;
     cagggtgagt cattttaatc tatggacccg aatatcttcc aaataacggt atctacaaaa        60
     aaatggttta gataaaagtt gaccaggaca gagggggtca ttcaattgta ccattggttt       120
     tgaccttgag gtcaattttg aaggttattt caaggtcacg atggtttttt taaatgggac       180
     accctatttt tgactgcgga tttcgaaaga gcggaaaatt ttacatcaaa cttgtcttat       240
     gaaaaaattg tttttgcgac cttggaaagg tcaaaaatga aggtgaaatg cctgaaaaac       300
     gatctggtgt actttttctg aaatgacgtg gttttctggg taacacaaat gtgcataatg       360
     cttaaacatt actacttgca actttcggcc ggattcttcg acgcacgcct attgctcccc       420
     tcccaccgct cgcgccttag caacggcgcc gccggacggc gtaacgcacg gtcctgagac       480
     gatgtatcgc gctccttagt tacgccgtcc ggcggcgccg ttgctaaggc gcgagcggtg       540
     ggaggggagc aataggcgtg cgtcgaagaa tccggccgaa agttgcaagt agctgacagc       600
     actgcgatac ctaatgctaa taatcaacga ttgaaaaaaa ctaaacaatt acgtttgatt       660
     taagatttat aattattgtt ataatagagt tttattcctt ttctttctta ctcacttctg       720
     cataattgaa aaatttacta tttaaagttg cttaaattta aaaattccaa acatacatac       780
     agggtatgta ggtaattaca ttcacaagtt acctttccag aatggctgat tatagtccta       840
     atgagattgt tgatattata ttagttttag gggagtgtca tagcaattac aatgcagcat       900
     caaggcttta tgctcaacgt tttcctgaaa ggcgacatcc aactgatatg acaatacgta       960
     gtttagtcca aagagctcgc aatggacatc ttgttcgtca acgtcaacat catgaatatg      1020
     aggaaaatga tgcgcgagct gtaactattt tagcaatact tcaccttaat cctcatgtta      1080
     gtactcgcca gattgaaagg gaaataggta taccacaaag aactgttgtt agaattttaa      1140
     gagctctaaa ttatcaccct ttccacatca ctcttacgca ggctttacag cctaatcatc      1200
     atctgatgcg tattgctttt tgccagtggg ctttacaaat gttacacgat gatcctaatt      1260
     tttttaggta tgtgcttttc tcagatgagg ctaaatttta tagtgacgga caacttaata      1320
     gacacaactg ccattattgg tcagatgtta atccccactg gtataggcca atagatcatc      1380
     aaaatcgatg gagtattatg gtgtggtgcg gcattgtaaa tggttatttg attggacctt      1440
     atttttttga agagaacgtt gatagacaca gttacttatc gttgctaaga gatcacttac      1500
     caggcttatt agaagatgtt gacttagcaa caagagcaag aatgtggctt caacaagatg      1560
     gtgctgcacc gcattatgca ctcattgtac gtgccttttt aaatgccagt tacaatgaca      1620
     gatggattgg acgaaggggt ccagttgaat ggcctccttg ctcaccagat ttgacgtcgc      1680
     ctgatttctt tttatgggga tacttgaaaa atgttgtttt tgctgaacga ccaaccacaa      1740
     gagatgattt tatggaccgc attcgtagag cttgtgcagc cattcctaga gctaccctgc      1800
     ttagaactgt ggatagtttt caaaacagat tgcagttatg cctcgaagcc aacggaggta      1860
     attttgaaca attactccgt gggtaattca tttaaattac agtgtcagtg agaggcgagg      1920
     ggactcacga taatcaagca ccccgacgtg agaggcaagg ggactcacga taatcaagca      1980
     ccccgacgtg agaggcaagg ggactcacga taatcaagca ccctaaagga aacagaactt      2040
     actacgtcca cgtcgttgtt tccgggtaac gctaaaagta agatgaaagt gcttttgacc      2100
     ttgatatgac cttcaaaagg tcaggtcgaa aaactaaaaa atccctatgc tcatgtaaaa      2160
     agtgccattg tttaagagcc cattgtcaag aaacaggttc tgcggtcaaa aatagggttt      2220
     actaatcaaa aaatgcgtta tgagcctcaa acaaccttga aaattgacct caaggtcaag      2280
     ctagtcaaag tgattaacac ttttacaatt cattgacttt gtttaagcat tatgcacatt      2340
     tgtgttaccc agaaaaccac gtcatttcag aaaaagtaca ccagatcgtt tttcaggcat      2400
     ttcaccttca tttttgacct ttccaaggtc gcaaaaacaa ttttttcata agacaagttt      2460
     gatgtaaaat tttccgctct ttcgaaatcc gcagtcaaaa atagggtgtc ccatttaaaa      2520
     aaaccatckt gaccttgaaa taaccttmaa aattgamctc aaggtcaaaa ccaatggtac      2580
     aattgaatga ccccctctgt ccggtcaact tttatctaaa ccattttttt gtagataccg      2640
     ttatttggaa gatattcggg tccatasact aaaatgactc accctg                     2686
//
ID   Mariner-32N1_RPr repbase;    DNA;    INV; 901 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-32N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-901
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3279-3279 (2015).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 901 BP; 335 A; 130 C; 118 G; 318 T; 0 other;
     taggttttta acttcaaatt aaagtttttt tatttcaaat taaagtttat gaaatatgat        60
     atgataacgc aaaaatgatg cgctaaattt ttcacaaaat gctccacaaa cacatgagaa       120
     aataattttt attgatgaat ccggtttcaa ctatcatctt cgcagaaata aagctcgatc       180
     gaggataaat acttcagccc atgtaatagt tccaacaaca agaggaagaa acgtttcatt       240
     aattttagcc atgaatttaa atggtattat acattctcaa gtaatttcta actcaacagt       300
     aaattcaaat gtttttatta catttcttga tggattattt aataaacttg ctgaaagtaa       360
     catcgtagaa gcatggttgg ttctggacaa tgccagaatc cataaaactc gggaagtgcg       420
     cgaaaagatt agtgagacta atcatacgtt aatttttcta tcaccatatt cccccatgtt       480
     aaatcctata gaaaaggtat tttcaaaaat aaaattgtct gcacgaaatt tgctggccga       540
     tccacaaaat aatcaaaatt tggttcagat tattgaagaa tcagtgacca ctgttacttc       600
     tactgattgc aacaattatt acgttgacat gtctaggaaa ctaccgctgg ctgtagcaga       660
     acaaccgttg catttaaatg ctttgtccaa attgctttat ttaacttttc ttgattctta       720
     ttcttgttag tattcatttt ttattgtaaa tattcaatat tacattaata aactttaatt       780
     tgaaataaaa aaactttaat ttgcttttaa aaaagtttaa tttgaaataa aaaaacttta       840
     atttgaattt aaaaaaattt aatttgaaat taaaaaactt taatttgaag ttaaaaacct       900
     a                                                                       901
//
ID   Mariner-32_AEc repbase;    DNA;    INV; 1306 BP.
XX
AC   .
XX
DT   20-AUG-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-32_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1306
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 578-578 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(115..756,814..1188)
FT                 /product="Mariner-32_AEc_1p"
FT                 /translation="MEQYTPRERSQIVEIYIQQNKSIVKTQRAWRKINKVK
FT                 SAPSANTLYRLYERFSTGEALTNPKRPNKMRPRRSDDNIALVQASVQRSPT
FT                 TSQTRRSEQLGIKRTTLRRILHHDLHLFPYKVQLTQKLLPVDKPRRLEWAQ
FT                 RVIEMVETDENFWQKIIMSDEAHFTLTGTVNEQNCRFYGTENPQIINEVPL
FT                 YAQKVTVWCGVCADMIIWPVLFRRFFVRDNGMEHFXFXQDDAPPXTARATI
FT                 NFLKQLFPGRLMSKNGDFEWPPRSPDLTAPDFFLWGYLKSKVYVNKPRTLD
FT                 ELKANIRQEIAAISAETLVKTMENAAKRALLAMQAQGGHLRDIIFKK"
XX
SQ   Sequence 1306 BP; 411 A; 273 C; 274 G; 342 T; 6 other;
     cagggttggc catattcgac ggaaagatct ggcaacactg taacttttga cagagatgtt        60
     agatcgagta acgacgtagc gcgtttgaag cgtcagtcga aggaaatttt tgccatggag       120
     cagtacacgc cacgcgaacg ctctcagatt gttgaaattt acattcaaca aaacaagtca       180
     attgttaaaa ctcaacgtgc atggagaaaa ataaataaag tgaaaagtgc gccttccgcg       240
     aacacattgt atcgtttgta tgaaagattt tcaactggtg aggcacttac taatcccaag       300
     cgtccaaata aaatgcgacc aaggcgatcg gatgataata tcgcactcgt acaggccagt       360
     gttcagaggt ctccaacaac atctcaaaca cgtcgatctg agcagttggg cataaaacga       420
     accactttac gtcgcatatt gcatcatgat ttgcatttgt tcccatacaa agttcaactg       480
     acgcaaaaac tgttacctgt cgataagcca cgtcgattgg aatgggccca aagagtaatc       540
     gaaatggttg aaactgacga aaatttttgg caaaaaatca tcatgagcga tgaagctcat       600
     ttcacgttaa ccggaaccgt aaacgaacaa aattgtcggt tctatggtac tgaaaatcct       660
     caaatcatta acgaggtacc tctttatgcc cagaaagtga ctgtttggtg cggtgtttgt       720
     gctgatatga tcatttggcc cgttcttttt cgaagatgaa gctggcngaa cggttaccgt       780
     caatcaggag cgttatcgtg atatggtaag tgattttttg ttcgtgataa tggtatggag       840
     cacttctgnt ttnaacaaga tgacgctccn ccacncacag ctcgagccac tatcaatttc       900
     ttgaaacaat tgttccctgg acgtttgatg tcaaaaaatg gtgattttga atggccaccg       960
     cgttcaccag atttaacggc tccagacttc tttttgtggg gctatttgaa atcaaaggtt      1020
     tatgtcaaca agccaaggac cctagacgaa cttaaggcca acatccgaca ggaaatagcc      1080
     gccatatcng ccgaaacatt ggtcaaaacg atggaaaacg ctgcaaaacg ggcactactc      1140
     gccatgcagg ctcaaggcgg tcatttaaga gatatcatat tcaaaaaatg atgtacacaa      1200
     atctccttga accctattaa atgattttta aaatgaacag caaaaaatgt gtttttttcc      1260
     catgattgaa aaaaaaacat ctttccgtcg aatatggcca accctg                     1306
//
ID   Mariner-32_HSal repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-32_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 872-872 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1104
FT                 /product="Mariner-32_HSal_1p"
FT                 /translation="MAINKEHIRYAMHFAFHLNKNASEAAKMICAAYGENA
FT                 VTDRTCRNWFERFRSGDFDLHDQPRPGQPKKFEDEELQNLLNENTAQTQQE
FT                 LAEKLGVSQKAICDRLHRMGKIQKEGKWVPHELTIDNKNRRLTTCVTLLAR
FT                 QQKKDFLHKIVTGDEKWIMYENPKRKKSWVDPGQPTTSTAKPKRFGKKVLL
FT                 CIWWDQKGVLYYELLEPGKTIKAEIYQEQLIRLSDAIEKKGHLLDKAAVKS
FT                 SCCTTMLNRIQQKPQRKPSYTWAGKFSHTRRILQTWLHQIFTCFGRCNTHC
FT                 LIHIFRQLTTYEISSMTL"
XX
SQ   Sequence 1277 BP; 423 A; 259 C; 265 G; 330 T; 0 other;
     ttaggtctag tagttaattc tttccgatga aatttacata gctcagagca aaatttgaaa        60
     ttgaaatatt ctcccgctct tttgcggttt taaagtgttg acatttaact tttcgaaatg       120
     acatatggtt tggcgtttga tgcacataac ctcaaataat cagtagtgtt cacgatggct       180
     atcaacaaag agcatattcg atacgcgatg catttcgcat ttcatttaaa caaaaacgct       240
     tctgaagcag ccaaaatgat ttgtgctgct tatggtgaaa atgctgtgac cgatcgcacg       300
     tgccgaaact ggtttgaacg ttttcgaagt ggtgattttg atcttcacga ccaaccacgc       360
     cccggtcagc caaaaaaatt tgaagacgag gagttgcaaa atctactgaa tgaaaatacg       420
     gcacaaacac aacaagaact tgcggaaaag ctgggagtaa gccagaaagc tatttgcgat       480
     cgtttacatc gtatgggaaa gatacagaaa gaagggaagt gggttccaca cgagctaacc       540
     attgacaaca aaaatcgccg attgaccaca tgcgttacct tgctcgccag acaacaaaaa       600
     aaagattttt tgcacaaaat cgtaactggt gacgaaaaat ggattatgta tgaaaatcct       660
     aaacgcaaaa aatcatgggt agaccctggt caaccgacaa cgtcgacagc aaaacccaaa       720
     cgtttcggaa aaaaagttct tctctgtata tggtgggacc agaagggtgt gctgtactat       780
     gagctcttgg aaccgggtaa aaccattaaa gcagagattt accaagagca attgatacgt       840
     ttgagcgatg caattgagaa aaaaggccat ttactggaca aggcagccgt aaagtcatcc       900
     tgctgcacga caatgctaaa ccgcatacag cagaagccac aaaggaaacc atcttacact       960
     tgggctggga agttctccca cacgcggcgt attctccaga cttggctcca tcagattttc      1020
     acttgtttcg gtcgatgcaa cacgcactgt ctgatacaca tttttcgaca gttgacgacg      1080
     tacgaaattt catcgatgac tttatagcct caaagccacc aagtttctat cgtgatggga      1140
     ttcggcaact gcccaataaa tggcgtaagg tcatcgataa caacggagaa tatttcattg      1200
     attaatcttg ttctattgat ttttaaataa agattgaaaa ttgtcgaaaa tcggaaagaa      1260
     ttaactacta gacctaa                                                     1277
//
ID   Mariner-32_LMi repbase;    DNA;    INV; 1414 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1414
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 27-27 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..1219
FT                 /product="Mariner-32_LMi_1p"
FT                 /translation="MDRVVLKWTVRLVGGSQVFGGLRPVVGGREVSVADWQ
FT                 SVAMATWSVEHRVFAVEEFIRNNESIVAVTRAFRRRFNIPPRGSVPKRDTI
FT                 LSWVHNFRTTGSCAPKWTPRPRTIRTPENVERVRRDVIASPRRSTRRRAQA
FT                 LGMSRRSLQRILNQELKFHPYKIMVVQKILPTDHLQRLQFSQRMLELLEDE
FT                 NLIIMMSDEAHFHINGYVNKQNCRYWADTNPRDLHQSPLHSDEVTVWCGVS
FT                 KVGIIGPYFFENEREQAVAVNSQRYVNMIEEFLLPQLEENNYDMDNMWFQQ
FT                 DGATAHTARISMQAVRALFPGRLISRNGDVHWPPRSPDLTVCDFFLWGYLK
FT                 ARVYMNKPRTIQELKAAIHNEITSIPSDVLERAMRNVKDRLQECVAREGGH
FT                 LMDVIFKN"
XX
SQ   Sequence 1414 BP; 376 A; 305 C; 352 G; 381 T; 0 other;
     cagggtggcg cagatggatc gggtggtttt gaagtggact gtacgtctgg tgggggggag        60
     ccaggtgttc ggcggtctgc gtcctgtggt ggggggacgg gaagtttcag ttgcagactg       120
     gcagtcagtc gcgatggcta cgtggtccgt tgagcatcgt gttttcgcag tggaagagtt       180
     tatacgcaat aacgagtcaa ttgttgctgt gacgcgtgcc tttcgccggc gtttcaacat       240
     cccacctcgc ggtagtgttc ctaagcgaga tacgatattg agttgggtgc ataatttccg       300
     cactactggt tcatgtgctc caaaatggac gcctagacct cgaacaataa gaacgcctga       360
     gaacgtggag cgtgtgagac gcgatgtcat tgcgagccca cgtcgatcaa cgagacgtcg       420
     tgctcaagct cttggaatgt cacgtcggag ccttcaaagg attcttaacc aagaactgaa       480
     attccacccc tataaaatca tggtggtcca gaagattctc ccaacagacc atcttcaaag       540
     gcttcagttt agccaacgga tgttggagtt attggaagat gaaaacctga ttatcatgat       600
     gtctgacgag gctcactttc acattaacgg ctacgtcaac aagcaaaatt gccgttactg       660
     ggccgacact aacccaagag acctacacca atcgcctctc catagtgacg aagtgacggt       720
     ttggtgtggg gtttctaagg tagggataat tgggccttac ttttttgaaa atgaaaggga       780
     gcaggcggtt gctgttaatt cgcagcgtta tgtgaacatg attgaagaat ttcttctccc       840
     acaacttgag gagaacaatt acgacatgga caatatgtgg ttccaacaag acggggcaac       900
     tgcacatacc gctaggatat caatgcaagc tgtacgcgct ctgttccctg gccgtttgat       960
     ttcccgtaat ggagatgtcc attggccccc tcgctcaccg gacctcacgg tatgtgactt      1020
     tttcttatgg ggctatttaa aagcaagggt ctacatgaac aaaccccgga ccattcagga      1080
     gttgaaggca gcaattcaca acgaaatcac atcaattcct agtgatgtgc ttgagcgggc      1140
     aatgcggaac gttaaggacc gactccaaga atgcgtcgct cgagaaggag ggcatttgat      1200
     ggatgtaatt tttaaaaact aactttccta attttttgtt aataaagaag gagggcattt      1260
     gatggatgta atttttaaaa aataacttta ctaatttttt gttaataaac ttccattgta      1320
     actacacgtt ttgaacttta tttcaatcca atacctttaa aattgatagt ttgacaagta      1380
     ttttaaaacc acccgatcca tctgcgccac cctg                                  1414
//
ID   Mariner-32_RPr repbase;    DNA;    INV; 1746 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-32_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1746
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3280-3280 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1572
FT                 /product="Mariner-32_RPr_1p"
FT                 /translation="MIMNTNTSPEEVTVEDNTGSPVNKRHYRRIMQVTEDS
FT                 DDSNLENEENLPIPRCRNRRGNYVKTSIDKKEILIKCYEEGKAIAESAELA
FT                 GINKNTATSIIRRYKKDGCEIIRRNRGGKRNVKLSDEILNYVEKLIEENPS
FT                 ITLKNIKKKIFENKNVNMTTTTVFNALKALKITLKTATINLDRLNSKSTIE
FT                 QRKNYALNFSQNAPQTHEKIIFIDESGFNYHLRRNKARWRINTSAHVTVPT
FT                 TRGRNVSLILAMNLNGIIHSQVISNSTVNSNVFITFLDGLFNKLAESNIVE
FT                 AWLVLDNARIHKTREVREKISETNHTLIFLSPYSPMLNPIEKVFSKIKLSA
FT                 RNLLADPQNNQNLVQIIEESVTTVTSTDCNNYYVDMSRKLPLAVAEQPLHL
FT                 NALSKLLYLTFLDSYSC"
XX
SQ   Sequence 1746 BP; 690 A; 233 C; 244 G; 579 T; 0 other;
     taggttttta acttcaaatt aaagtttttt tatttcaaat taaatttttt taaaagcaaa        60
     ttaaagtttt tttatttcaa attaaagttt atgaaatatg atatgataat taattattat       120
     tttccaaata tgtttatata aggtttatat aaggttatat gtttaaataa ggttaaacac       180
     ttgtttaaag tttagcaatt gcagtaatca caaaataaaa cttttctttg caatcgcagt       240
     aaacgcagaa taaaactttt cttttcttgt tgtgtaatta ttatttattt taaaataaat       300
     atttgaaatt caaaatcctt aaaaccctta aataagttta tgataatgaa caccaataca       360
     tcacctgaag aagtaactgt tgaagataat acaggaagtc cggtaaataa acgtcattat       420
     cggcgaataa tgcaggtcac agaagattct gatgatagca atttagaaaa tgaagagaac       480
     ttacctattc ctcgttgcag aaaccgcagg ggaaattatg ttaaaacgag tattgacaaa       540
     aaggagattt tgataaaatg ctatgaagaa ggtaaagcta ttgcagagtc agcagaatta       600
     gctggaatta ataaaaacac agccacttct ataattagaa ggtataagaa ggatggatgt       660
     gagattatta gacgaaatcg tggtggaaaa agaaatgtta aactaagtga tgagatttta       720
     aactatgtgg agaaattaat tgaagaaaat ccatcaatta ctttaaaaaa tattaaaaaa       780
     aaaatttttg aaaataaaaa cgtcaacatg accacaacaa cggtatttaa tgcattaaaa       840
     gctttaaaaa taacattaaa aaccgccaca attaacctgg accgtttaaa ctccaaatca       900
     acaattgaac aacgcaaaaa ttatgcacta aatttttcac aaaatgctcc acaaacacat       960
     gagaaaataa tttttattga tgaatccggt ttcaactatc atcttcgcag aaataaagct      1020
     cgatggagga taaatacttc agcccatgta acagttccaa caacaagagg aagaaatgtt      1080
     tcattaattt tagccatgaa tttaaatggt attatacatt ctcaagtaat ttctaactca      1140
     acagtaaatt caaatgtttt tattacattt cttgatggat tatttaataa acttgctgaa      1200
     agtaacatcg tagaagcatg gttggttctg gacaatgcca gaatccataa aactcgggaa      1260
     gtgcgcgaaa agattagtga gactaatcat acgttaattt ttctatcacc atattccccc      1320
     atgttaaatc ctatagaaaa ggtattttca aaaataaaat tgtctgcacg aaatttgctg      1380
     gccgatccac aaaataatca aaatttggta cagattattg aagaatcagt gaccactgtt      1440
     acttctactg attgcaacaa ttattacgtt gacatgtcta ggaaactacc gctggctgta      1500
     gcagaacaac cgttgcattt aaatgctttg tccaaattgc tttatttaac ttttcttgat      1560
     tcttattctt gttagtattc attttttatt gtaaatattc aatattacat taataaactt      1620
     taatttgaaa ttaaaaatct ttaatttgct tttaaaaaag tttaatttga aataaaaaaa      1680
     ctttaatttg aatttaaaaa aatttaattt gaaattaaaa aactttaatt tgaagttaaa      1740
     aaccta                                                                 1746
//
ID   Mariner-32_SIn repbase;    DNA;    INV; 966 BP.
XX
AC   .
XX
DT   20-APR-2012 (Rel. 19.02, Created)
DT   20-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-32_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-966
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 396-396 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           206..895
FT                 /product="Mariner-32_SIn_1p"
FT                 /translation="MEQRVCINFCVKNGIKCSKTLEMLTVAYGESTLSKKN
FT                 VYKWYKLFQEGRENVNDEPRSGRPSTSKTDENVQEVKEIVLKNRRITIREI
FT                 ADDLNISFGSCQSILTDVLGMTRVSAKFVPKLLNFDQKQRRMNIAQDMLND
FT                 VNDDPDLLKRVITGDETWVYGYDVETKAQSSQNWKSPGEDEDLRRLRRLRL
FT                 HRWRSSRQYPKVHFRNVLTTGKSAGTNALYQRGIILKGIT"
XX
SQ   Sequence 966 BP; 305 A; 154 C; 224 G; 283 T; 0 other;
     cgaggtgtga tcaaaaagta aggtgacttt ttgaatttcg cgcgctctgt acactctaat        60
     ttcaaaattt ttttttttgt gttggtacac tcgtcacgat catatgttca cagttttgac       120
     tatatagcat gtgttgtttt tatgtgagag gcataaaggt tagactcgtg tttgcgtgct       180
     cggcgatttt ttgctgttga aaataatgga gcagagagtt tgtattaatt tttgtgtaaa       240
     aaatggtatt aagtgttcaa aaactcttga aatgttgaca gtggcgtacg gtgagtcaac       300
     tttgagcaaa aaaaatgttt ataaatggta taagttattc caagagggcc gagaaaatgt       360
     taacgatgaa cctcgctctg gacgccccag cacgtcaaaa accgacgaaa atgttcagga       420
     agtgaaagaa attgtgttga aaaatcgtcg aatcacgatt agagaaatag ctgatgatct       480
     taacatatcg tttggctcat gccaatcaat tttaacggat gttttgggta tgacacgtgt       540
     gtcagcgaaa ttcgttccaa aactgcttaa ttttgatcag aagcagcgtc gcatgaacat       600
     cgcccaagac atgttgaacg acgtcaatga tgatcctgat ctgctcaaaa gggttataac       660
     tggtgacgaa acatgggtat atggttatga cgtcgaaacc aaagcccaat catcccagaa       720
     ttggaagagc ccaggagagg acgaagattt gcgacgattg aggagattaa ggctgcatcg       780
     ctggaggagc tcaaggcaat acccaaaagt gcatttcaga aatgttttga cgactggaaa       840
     aagcgctggc acaaatgcat tgtatcagag ggggattatt ttgaagggga taacataatt       900
     ttggatgaat aaatgaatat ttttttataa aaatgaaaag tcaccttact ttttgatcac       960
     acctcg                                                                  966
//
ID   Mariner-33_AEc repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   20-AUG-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-33_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1277
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 579-579 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           167..1201
FT                 /product="Mariner-33_AEc_1p"
FT                 /translation="MSNFVPNKVFLQRVLLHYFNMKKSAAESHRILAEVYG
FT                 DHALSERTCQEWFARFKSDDFDLEDQEGAGCPRKFEDAELEALLDEDPCQT
FT                 QEELALSLEVTQQNISLRLKAMGMIQKQGNWVPYELKPKDIERRFFACQQL
FT                 SERQKRKDFLDRIVTGDEKWIYYDNPKRRKSWGKPGHASTSTAKPNIHDSK
FT                 LMLCIWWDQVGVVYYELLQPNETVTDDRYQLQLMRLSRELKEKRPQYEQRH
FT                 DKIILQHDNARPHAAQAVKKYLETLKWEVLPHPPYSPDLAPSNYHLFRSMT
FT                 HGLAEQHFRSYEETKKWVDSWIASKPTSFFRDGIRKLPERWEKVVASDGQY
FT                 FE"
XX
SQ   Sequence 1277 BP; 394 A; 266 C; 292 G; 325 T; 0 other;
     ggggtacaaa taagttcgtg cggttttgaa agagatggcg taactactgt ttcattccac        60
     cgttccgtat ttctaagtat gcgttggata gctatcatta gtaggttaag ttcagtatgt       120
     gtcatttgtt cgaattgtaa acaacaatat ttttacttcg tcaaatatgt cgaactttgt       180
     accaaataaa gtgtttttgc agagagtttt actgcattac ttcaatatga agaaaagtgc       240
     tgccgaaagt catcgtattt tagcggaagt ttatggtgac catgctctat ctgagcgaac       300
     gtgtcaggag tggtttgcac ggtttaagag tgatgacttt gacttggaag accaagaggg       360
     tgccggatgt ccaagaaagt ttgaagacgc agaattagag gcattactcg atgaagatcc       420
     atgtcaaacg caagaagagc ttgcattatc attggaagtg actcaacaaa acatttcttt       480
     acgcctcaaa gccatgggaa tgattcaaaa gcaaggaaat tgggttccgt acgaattgaa       540
     accgaaagac attgaaaggc gattttttgc ttgtcaacaa ctgtctgaaa ggcaaaaaag       600
     aaaggatttt ctggatcgta tcgtcacggg cgatgaaaaa tggatctatt acgataaccc       660
     aaagcgaaga aaatcgtggg gtaagcccgg tcacgcatca acatcgacgg caaagccgaa       720
     tattcacgat tccaagctta tgctctgtat ttggtgggat caggtcggtg tggtgtatta       780
     tgagctgctc cagccaaacg aaaccgtcac tgacgatcgc taccaactgc aattgatgcg       840
     tttaagccga gaattgaagg aaaaacggcc acaatacgag cagaggcacg acaaaataat       900
     tttgcagcac gacaacgctc gacctcatgc cgcacaagcc gtgaaaaagt acttggaaac       960
     gttgaaatgg gaagtcctac cccacccgcc gtatagtcca gaccttgccc cttccaacta      1020
     ccacctcttc cgctcgatga cacatggcct ggctgagcag catttccgtt cttacgagga      1080
     aaccaaaaaa tgggtcgatt catggatcgc atcaaaaccc acatcgtttt tccgagatgg      1140
     tatccgcaaa ttgcccgaaa gatgggagaa agtagtggcc agcgatggac aatactttga      1200
     atgattacat tgtaaccggt ttttcacaat aaagccccaa atttcgagaa aaaaccgcac      1260
     gaacttattt gtacccc                                                     1277
//
ID   Mariner-33_HSal repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-33_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1292
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 873-873 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1223
FT                 /product="Mariner-33_HSal_1p"
FT                 /translation="MELSREHFRAIIFYNFRRGLSQQQCIDELNSTFGDEA
FT                 PSKTTIYRWYTEFNRGRSSLSDEFREGRPKSVVVPENIDAVRELILQDRHV
FT                 TYREIEASLGISGTSIHSILHEHLAVKKICSRWIPHNLTIAQKKARVDWSK
FT                 EMLKKYDCGASKHVYDIVTGDESWIYAYEPESKQQSTVWVFQDEPNPTKVV
FT                 RARSTSKQMVACFFGKTGHVATVPLVQCRTVNSEWYTTICLSEVFGKIRET
FT                 NRRRRIILHQDNASSHTSAQTRDFLRTEKVELMGHPPYSPDLAPNDFFLFP
FT                 QIKNKLRGQRFSTPEEAVDAFKMHVLEVPQSEWKKCFENWFKRMQKCIDLH
FT                 GEYFEKQ"
XX
SQ   Sequence 1292 BP; 387 A; 261 C; 281 G; 363 T; 0 other;
     cgagggttgc cttttatatt tcgggaatgg acgatccagg tgctgccatc tgacaaccga        60
     cgtccctaac gtaaagttcg actttttgtc agtatactta ctcagaacgt tttgatgtcc       120
     atgcgccatt tgtgttgttt acagtgacat gaaaaattga tgtcggccaa gaaatggaat       180
     taagtcgtga acatttccgt gcgattattt tttacaactt tcgacgtgga ttatctcaac       240
     aacagtgcat cgatgaactt aattcgactt ttggcgatga agcaccatca aaaaccacta       300
     tatatcgatg gtatacggaa ttcaatcgtg gccgtagttc gcttagtgat gaatttcgtg       360
     aaggtcgtcc aaaatcggtt gttgttccag aaaacattga tgctgtgcgt gaactgatat       420
     tgcaagatcg tcatgtgact tatcgtgaga ttgaggcatc cttgggcatt agtgggacca       480
     gcatacattc aatattgcat gaacatttgg ctgtcaaaaa aatttgttcg cgttggatcc       540
     cacataattt aacaatcgct caaaaaaagg ctcgtgtcga ttggtcgaaa gaaatgctca       600
     agaaatacga ttgcggtgct tcaaaacacg tctatgatat cgtaacaggt gacgaatcat       660
     ggatctatgc gtatgagccc gaaagtaaac agcagtcgac tgtatgggtc tttcaagatg       720
     agccaaatcc aacaaaagtt gttcgcgcac gaagcacttc gaagcaaatg gtcgcctgtt       780
     ttttcggaaa aaccggacat gtggcaactg taccattagt gcaatgtcgg acggtcaatt       840
     ctgaatggta cacaaccatt tgtttgtcag aagtcttcgg aaaaataagg gaaaccaacc       900
     gccgaagacg catcattctc caccaggaca atgcgagctc tcacacatcg gctcaaacaa       960
     gagacttttt gagaactgaa aaagtcgaat tgatgggtca tccgccgtac agccctgatt      1020
     tggcacccaa tgacttcttt ttattcccgc aaatcaaaaa taaattacga ggtcaacgtt      1080
     tttcgacgcc tgaagaagcg gttgatgcgt tcaaaatgca tgttttggag gtacctcaat      1140
     cggagtggaa aaagtgcttc gaaaattggt tcaagcgcat gcaaaagtgt attgatcttc      1200
     atggagaata ttttgaaaaa caataaaccc atgtacgatg attaatttcc tttttttgtt      1260
     ctctattccc gaaatataaa aggcaaccct cg                                    1292
//
ID   Mariner-33_LMi repbase;    DNA;    INV; 1825 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1825
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 28-28 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1557
FT                 /product="Mariner-33_LMi_1p"
FT                 /translation="MSSLSGIRRQSKDIVYKVYNFFKALENCQEKVCDFFR
FT                 DTQKTTAEACQVSVRTVQRICEEAHKSVIENEDILGPSFSSPRKNITRQKP
FT                 VTELDDFQKDVIRRSVQEFYDNGEYPTLKKLKDVLKDKIDYAGGITSLHKI
FT                 VRKLGFRYRRANDGRRFLMERKDVVAARASFLRRMLEIRNEDHPRPIIYID
FT                 ETWVNQNHSKSFIWQDSKRNGGLKVPLGKGSRLIICHAGSAKYGFIEGAEL
FT                 VFQSKSGVDYHQEMNNTVFREWFTDLLRSLEEGCVIVMDNASYHSMLKEKI
FT                 PNSSFKKADILEWLQSKSIPHDPTHTIAELLCTVRQHSSSFRRYELDDLAA
FT                 EMGHEVIRLPPYHCQYNPIELIWAQIKREVADKNSTFKIRDVRKLLEDAIK
FT                 NVTIEDWQKCVAHAERLQEEDFAKEGLRGEQIQRILINLREIVTRLPVMTK
FT                 IVKLMSAHCSFCLVSYI"
XX
SQ   Sequence 1825 BP; 577 A; 344 C; 427 G; 477 T; 0 other;
     ctccgttcac tctgacgagg cggctcaagg tcattcggcc gcactccgca cgtcacgtga        60
     tcaccccctc cacagtgcct tttcccctct ccccagcgcg ccgtccatcc cttctgcagt       120
     tctacaacag tgtggtagcg tttctctgcg tttacattta aatttgctac aatgtcgagt       180
     ctgagtggta ttaggcgtca gtcgaaggat attgtgtata aagtgtataa ttttttcaaa       240
     gcgttggaaa actgccaaga aaaggtttgc gactttttca gagatactca aaaaacaacc       300
     gcagaagcct gtcaggtgtc ggtaagaaca gtgcaacgca tctgtgagga agcgcataaa       360
     agtgtaatcg aaaatgaaga tatcctaggg ccaagctttt catctccaag aaaaaacatt       420
     actcgccaaa agcctgtcac agaattagac gatttccaaa aagacgtaat ccgccgctca       480
     gttcaagaat tttacgataa tggtgaatac ccaacactta aaaaacttaa agatgtttta       540
     aaagataaga tagactatgc aggaggtatt acatctttgc ataaaattgt gagaaaactt       600
     ggcttcagat acagaagagc taatgacggt cgaagatttt tgatggagag aaaagatgtt       660
     gtagccgcaa gagcctcatt tttaagaaga atgcttgaaa taaggaatga agatcatcct       720
     cgacctatca tttacatcga cgaaacatgg gtaaatcaaa accattctaa aagttttatc       780
     tggcaggatt ctaaaagaaa cggtggtcta aaggtcccgt taggtaaagg atcacgtctg       840
     ataatctgcc atgccggatc ggccaaatat ggtttcatag agggggcaga attggtgttc       900
     cagtctaaaa gcggtgttga ttaccaccaa gagatgaata atacagtgtt tagggaatgg       960
     tttactgatc tccttcgaag cctggaagaa ggatgtgtga tagtcatgga caatgcaagc      1020
     tatcattcca tgcttaaaga aaaaattccc aactcaagtt tcaagaaagc cgatattttg      1080
     gaatggctgc aaagcaaaag catacctcat gatcccacac acacgatagc cgaattgctt      1140
     tgcactgtca ggcaacacag cagcagtttt aggcgatatg agcttgatga tctagctgca      1200
     gaaatgggac atgaagtaat acggcttcct ccttatcact gtcagtacaa tcccattgaa      1260
     ctgatatggg ctcaaataaa gcgagaggta gcagacaaga attctacgtt taaaattaga      1320
     gatgtgagaa aattactgga ggacgccatt aaaaacgtga caatagaaga ttggcagaaa      1380
     tgcgttgccc atgcggagcg attgcaggaa gaagactttg cgaaggaagg acttagaggt      1440
     gaacaaattc agaggatttt aataaatcta cgtgagatag tgacgagact tccagtgatg      1500
     acgaagatag tgaagctgat gtccgcccac tgtagtttct gtttggtgag ttacatataa      1560
     ctttttcact atttccttta ttaatgtaat tattttaggg taataatctc tggagtgatg      1620
     tacattatat acatattgca acgaacgaaa tgaaggtcac taaaatgtga taaattaatt      1680
     ttaaaaaccg gcagtgctta ttattgttgg cgcgttgttt aagcgggctg cctgcgcagt      1740
     gtgctggcaa gggagtaggg gagggagggt gtagagtggg gatacagctg cgtgaccttg      1800
     agccgcctcg tcaaagtgaa cggag                                            1825
//
ID   Mariner-33_SIn repbase;    DNA;    INV; 2323 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-33_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2323
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 397-397 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. ~350bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           587..1651
FT                 /product="Mariner-33_SIn_1p"
FT                 /translation="MPDYTRNEIVDILLVLGECRRNYRAAARMYHNRFPDR
FT                 CHPNDRVIADIERRERQRPNVRRQRRRINVPERDDPQVLLVLAVVHLNPHI
FT                 SLRDIEKQFGIPRSTAQRFLALHTFHPYHITLTQALTPNDYRRRLEFCNWA
FT                 QAMLRQDQQFFRFVMFSDEATFHNTGQLNRHNNHYWSYDNPHWHRPIDHQH
FT                 RWSLVVWCGIVNGYLIGPFFFDGNVNSANYLHFLEHELPVLLEDVDLVTRQ
FT                 RMWFQHDGAPAHRSWRVRQFLHRLFPRKFIGLGGHVEWCPRSPDLTSPDFF
FT                 LWGFIKNVVYAEIPTTRDNMIDRIRNCCISIPRNVLLETARNFERRIQLCI
FT                 QNEGRIFEHLLR"
XX
SQ   Sequence 2323 BP; 677 A; 472 C; 444 G; 730 T; 0 other;
     caaggtgtcc cattttaaaa aacgcacctt gataattctt caatgaagca ttttcagtaa        60
     aaatgtttca gacaaaagtt gcatggtttc gagggggaca taagatggtg ttattaattt       120
     gaccttgaat agttgcttga aggtcacgtg aaggtcactt tcaatttttt taatggaact       180
     gcctattttt tatgacatat tcttgtagct tatcttgaag cctttccaaa acactataat       240
     taaatgtttt ttcgttaagt attttttgag ttacaagact tgaaagttac agtaccgccg       300
     gcatagcatt actcaaggtg taccacgtgg aggttgccca gttgtttatt gtgttgtatc       360
     gtagaagtta attacatatt tgaacgcaaa atttgtcttc ccattctcgc tgtcgaaata       420
     aggggttacc attcaaataa ctaatgttgt tacctcagtg tggaacgata atccatagga       480
     gtcataatat ctcttcaaat tgaatctggg ctctcccttc caacagcacg aattcagtga       540
     aaattgaact tagaaaaaat tctttgttta tttcgtaact tcagcaatgc cagactacac       600
     aaggaacgaa attgttgata ttctcttagt tcttggagaa tgtcgtcgca attatcgtgc       660
     agcagctcga atgtatcata atcgttttcc tgatagatgt catcctaatg atcgagtgat       720
     tgccgatatc gaacgacgtg aaagacagcg tcctaatgta agaagacaac gacgtcgtat       780
     taatgtccct gagcgtgatg acccccaagt ccttcttgtg ttagctgtgg tgcatttgaa       840
     tccacatatt tcactacgag atattgaaaa acaatttggt attccaagaa gcacagctca       900
     gagatttttg gccttgcata cattccatcc atatcacata acattgactc aggcactaac       960
     acctaatgat tatcgtcgaa gacttgaatt ttgtaattgg gctcaggcta tgttacggca      1020
     ggatcaacaa ttttttaggt ttgttatgtt ctcagatgaa gctactttcc ataatacagg      1080
     ccaactaaac cgacacaaca atcattattg gtcctacgat aacccacatt ggcatcgtcc      1140
     aattgatcac caacatcgtt ggagtcttgt agtgtggtgt ggtattgtaa atggttactt      1200
     aattggaccc ttcttttttg acggaaacgt taattcagcg aactacttgc atttccttga      1260
     acatgaattg ccagtcctct tggaagacgt agacctagtg acaagacaac gcatgtggtt      1320
     ccaacatgat ggcgcaccag ctcacaggag ttggagagtc cgacagtttc tacaccgtct      1380
     cttcccacgt aagtttattg gacttggagg acatgttgaa tggtgcccca gatctccgga      1440
     tctgacaagt cccgattttt tcctatgggg atttataaaa aatgtggttt acgcagaaat      1500
     acctacaact agagacaata tgatagaccg tataagaaac tgttgcattt ctattcctag      1560
     gaatgtcctt ctggaaactg ctcgaaattt cgaacgtcga attcaattat gtattcagaa      1620
     tgaaggaaga attttcgaac acttattacg atagaaaatt ctcaaaatct tgccttaact      1680
     ggccggattt tttccgatct tgccttgact ggctgaatca ccgatcaatc ttgtcttgac      1740
     tgactggatc accgaccgat cttaccttga ctggttggat caccgatcaa tcttgttttg      1800
     actgactgga tcaccgaccg atcttacctt gactggttgg atcaccgatc aatcttgtct      1860
     tgactgactg gatcaccgac cgatcttacc ttgactggtt ggatcaccga tcaatcttat      1920
     cttgactggt tgaatcattc tccgatcttt cttcgaacac aaaagaggtg taaatccgac      1980
     cgagctacct ccacgtggta caccttgagt aatgctaatg ctggcggtac tgtaactttc      2040
     aagtcctgta actcgaaaaa tacttaacga aaaaacattt aattatagtg ttttggaaag      2100
     gcctcgagat aagctacaag aatatgtcat aaaaaatagg cagttctatt taaaaaattg      2160
     aaggtgacct tttcacgtga ccttcaagca actattcaag gtcaaattaa taacaccatc      2220
     ttatgtcccc ctcgaaacca tgcaactttt gtctgaaaca tttttactga aaatgcttca      2280
     ttgaagaatt atcgaggtgc gttttttaaa atgggacacc ctg                        2323
//
ID   Mariner-34_AEc repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-34_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1589
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 580-580 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           279..1307
FT                 /product="Mariner-34_AEc_1p"
FT                 /translation="MAKTRGARDIDERQQNAIIEGRKQGRTHEELAQQFGI
FT                 SKSAVTKLLKRWKAQGDYVKKKKTGRPRCTSSVVDRNILRISRSNPRFTAS
FT                 DIAKEILISGESGPTIRTIRYRLRVAGLHGRRPVKKPFISAKNRKMRVEWA
FT                 KAHLNWTPQQWSSVVRSDESKFLLFGTDGITWIRRPKGKRFDPKYQLPTMK
FT                 HGGGSVMVWGAFSAKGMGPLHRIDGKMDQKVYIDILENVMLPYAKRFLGRG
FT                 FIYQQDNDPKHRAAKVRKWFRQHRVTLLEWPSQSPDLNIIEPLWDELQRRL
FT                 ASKRATNTAEKFAQLEEEWKKISQSTIDALIDSMPRRCQAVIDAKDFATKY
FT                 "
XX
SQ   Sequence 1589 BP; 477 A; 306 C; 341 G; 465 T; 0 other;
     tacagtaccg gcaaaaatta tatcaccttt tggttttttg agtataactt tcgtcaaaga        60
     gtatcaaata cgctcaaaat tttacagtag ataccttgat ggtagacgca ctttgtacat       120
     gaaatgtaat gaaatttgac gatgttacgc catgattttt gaatttttta ttgattttgg       180
     caaaatcgcg cttttgtgct ttctttgttt ttcatgtcgt agccattgtt cttacggtct       240
     taacctaatt ttggcagtaa atttagttgt ttcacattat ggcaaaaacc cgtggtgctc       300
     gagatataga cgaacgacag cagaatgcta ttatagaagg ccgcaaacaa ggacgaacgc       360
     acgaagagct cgcacaacag tttggcattt ctaaatcggc ggtaaccaaa ttgctgaagc       420
     gttggaaggc ccagggagat tacgtcaaga agaagaaaac cgggcgaccg cgttgtactt       480
     cttctgtcgt cgatcgcaac atcctccgca tatcccgcag caatccacgt ttcacggcat       540
     cagatattgc caaagaaata ttaatttctg gtgagtctgg tccaaccata cggaccatac       600
     gttatcgtct gcgggtcgca ggactacatg gacgacgacc cgtaaagaag ccatttattt       660
     ccgccaagaa ccggaagatg cgagtggaat gggcgaaagc tcatcttaat tggacacctc       720
     agcagtggtc ctctgtcgtc cggagcgacg aaagtaagtt tttgttattt ggtactgacg       780
     gaataacatg gattcgtcgt cctaaaggca agcgcttcga tcccaagtac caacttccta       840
     caatgaaaca cggaggtggt tcggtcatgg tgtggggtgc tttctctgca aagggaatgg       900
     gtccccttca taggatcgac ggcaaaatgg atcaaaaagt atacatagac atcctcgaga       960
     atgtgatgct tccgtacgca aagcgtttcc ttggtcgtgg ctttatatat cagcaagaca      1020
     atgatccaaa gcatcgcgcg gctaaagtgc ggaagtggtt tcggcagcat cgagtaactc      1080
     ttctagagtg gccaagccaa tcgcccgacc taaatatcat cgaaccgttg tgggatgaac      1140
     tccagagacg tttagccagt aagcgagcta caaatacggc cgaaaaattc gcccaattgg      1200
     aggaagagtg gaagaagatc tctcagtcga caattgacgc acttatcgat tccatgccca      1260
     gacgctgcca agctgtaatc gatgccaagg attttgctac aaaatattag agttgtacaa      1320
     tctaaattat gaattttttt tgttcgtttt gaagacattt attttcgtta tggtaattaa      1380
     aaatttatta tgaaatttga catattttag agattttaaa taaaattaat ttttcacaag      1440
     ttgttgtttt tattatttga tgaaaagtta tttgttcagt aaactatatc tattattaaa      1500
     acatattaca atttgataga gatctgtaca gtttaaaaaa aattatgctt aaaaaaccaa      1560
     aaggtgatat aatttttgcc ggtactgta                                        1589
//
ID   Mariner-34_HSal repbase;    DNA;    INV; 1275 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-34_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1275
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 874-874 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1198
FT                 /product="Mariner-34_HSal_1p"
FT                 /translation="MELPKEHFRHALLLFFNQKKTAAEGHRILIETYGDVA
FT                 PSIKTCEYWFRRFKSGDFNVNDKDRSGQPKKLENADLQALLDENPAQSTSE
FT                 LARALNVDRTTVTKRLHDMGKIHKEGKWVPHQLSENAIANRLNICISLIAR
FT                 QKMKSFLYRIVTGDEKWIYFDNPKRKKSWVDPGQPATSTSRRNIHGSKVLL
FT                 CIWWDQEGVVYYELLNPNETVTADRYRQQLYKLKRALDQKRSPIASKRRKV
FT                 ILLHDNARPHVALSVKQTLLELEWEVLPHPAYSPDIAPSDYHLFRSMQHAL
FT                 EDTHFHNFEQVRKFVENWINSKEESFYRRGIHLLPERWEKVVENEGKYFD"
XX
SQ   Sequence 1275 BP; 426 A; 232 C; 252 G; 365 T; 0 other;
     ttaggagtgt gatttagttt tgagggtttt gcaagagatg gcactaatgt cagttttgtc        60
     gaagacattc caatcacagc tattgtttct taatgcttta atattaatcc atgatattta       120
     gtcatttact aacaatagac gcagtaaaaa tcgtgttaat accatcttaa aaatggagct       180
     tcctaaagag cattttcgac atgcgttgct tttgtttttt aatcagaaga aaacggcggc       240
     tgaaggtcat agaattctga tagaaactta tggtgatgtt gctccatcaa ttaagacatg       300
     tgaatattgg tttagacgat tcaaaagtgg tgatttcaat gttaacgaca aagatcgctc       360
     gggacaacca aaaaagcttg aaaatgcaga tttgcaagca ttattggacg aaaatccagc       420
     acaatccact tcagaacttg ccagagcatt aaatgttgat cgtacaacag ttactaaacg       480
     tttacatgat atgggaaaga ttcacaaaga aggaaaatgg gttccacatc aattatcgga       540
     aaatgccatt gcgaaccggt tgaacatttg catttcgttg atcgccagac aaaaaatgaa       600
     gagttttttg tatcgaattg ttactgggga tgaaaaatgg atctatttcg ataatcccaa       660
     acgaaaaaaa tcatgggttg atccaggcca accagcaaca tccacttcga ggcgcaatat       720
     tcacggttca aaggtattgc tgtgtatttg gtgggatcaa gaaggtgttg tgtactatga       780
     actgttaaat ccgaatgaaa ctgtcaccgc tgatcgttat cgacaacaat tatacaaatt       840
     gaagcgagca ttggaccaaa aacgatcacc aattgcgagt aaacgacgca aagtgatcct       900
     tcttcacgac aatgctcgac ctcatgttgc attatcagtg aagcaaacgc tattagagct       960
     ggaatgggaa gtcttaccgc accccgcgta ttctccagac attgctccat ccgattatca      1020
     cttgttccgg tcgatgcaac atgctctaga ggatacacac tttcataact tcgaacaagt      1080
     gcgaaaattt gttgaaaatt ggatcaactc caaagaagaa tctttttatc gtcgcggaat      1140
     ccatctcttg ccagaaagat gggaaaaagt tgtagaaaac gaaggaaaat attttgatta      1200
     aggtattcgt tcattatctt gtttaagtaa atcagttttt gagaaaaaac cctcaaaact      1260
     aaatcacact cctaa                                                       1275
//
ID   Mariner-34_LMi repbase;    DNA;    INV; 1759 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1759
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 29-29 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1340
FT                 /product="Mariner-34_LMi_1p"
FT                 /translation="MFSRLVATLQETGSFNPRQRNRRSTRTDEAAEVTVLA
FT                 SVAMNPHVSTRQLEHEIGIPKTSVHRILTRHRFHPYHVHLHQELHGNDFQN
FT                 RVQFCQWAQQQILANPNFFSNVLFTDECSFSNKGQVNTRNMHYWSSDNPRW
FT                 LRQVEHQRQWRVNVWCGMLGTTIIGPYFINGSLNGTVYANFLRRILPPLLD
FT                 EVPLRTRMLMWYQHDGCPAHNALRARRVLNRRYPARWIGRGGTVTWPARSP
FT                 DLNPLDFFLWGCIKDVVYRDIPTTPEDMQERIVLACNSLQQATLEAVNNSF
FT                 IQRVHQCIGVQGHHFEHL"
XX
SQ   Sequence 1759 BP; 499 A; 373 C; 392 G; 495 T; 0 other;
     ctcggggtaa tggaacacat ccacgtgctg acgttgacag aggacaaatg taaacataag        60
     tagactgcac acccgtcatt ccgtcaacca tcatcagttg aagagttgtg tgagtagaat       120
     gtacaccaac gaagagaagg tagaaatgct actcatctat ggggaatgta agttagcaga       180
     acagtaattg caatactgtt ttcttatgta caatacgggt acatttagta cagtagttta       240
     gtccttttaa atactgttgt gtagagtagg catacagtaa aggctgtcct tcctacaaac       300
     tgcatcgaca taacgtttct tttattgttg ttgaaggtag gcgaaatgct acgcaggcag       360
     aggaactgta cagagagcga tatcctgaca agaacccacc ttcccgacgg atgttttctc       420
     gtcttgttgc gacgcttcag gaaacgggaa gtttcaaccc acgacaacgc aatcgtcgta       480
     gcactcgcac agacgaagct gccgaagtta ctgttctcgc ttccgttgct atgaatccac       540
     atgtgagcac acgacagctt gaacacgaga ttggcattcc taaaaccagt gtacatcgta       600
     ttcttacacg tcaccggttc catccttacc atgtacacct acatcaagaa ttgcatggga       660
     atgatttcca gaatcgtgta cagttctgtc agtgggcaca gcagcaaatc ctcgccaacc       720
     cgaacttctt ctccaatgtt ctatttaccg atgaatgttc cttctcaaac aaaggacagg       780
     taaatacaag gaacatgcat tattggtcca gcgacaaccc acgatggctt agacaggtgg       840
     aacatcagcg tcaatggaga gttaacgtct ggtgtgggat gcttggtact acaattattg       900
     gcccttattt catcaatggt agtctaaacg gcacagtgta tgccaacttc ctcagacgaa       960
     ttcttcctcc tcttctggat gaagtgccgc taagaaccag aatgcttatg tggtatcaac      1020
     acgatggatg tccagcacat aatgccttgc gtgcacgtcg tgttctgaac cgaaggtatc      1080
     ctgccagatg gattggtcga ggaggaacag ttacttggcc tgctaggtct cctgatttaa      1140
     atcctctgga cttttttctt tggggatgca ttaaagacgt tgtctatcgc gatattccaa      1200
     caactccaga ggacatgcag gaacgtatcg tgcttgcttg taattctctt cagcaggcaa      1260
     cactggaagc agtaaataat tctttcattc aacgagtgca ccagtgtatc ggtgtccagg      1320
     gtcaccactt tgagcacctt tgaatgttct actcctgggc aatggtacag gagagtcaaa      1380
     gtcaattttg tgttatgttt ttacttggtt ttcatttgtt ttctgacaac tccagcaagt      1440
     ggacgagttt gtgatcccgg gctcaaagtc agtgttgtgt tatgtaatta ataacgttgt      1500
     gtttcagtga atggtacact gtgatacatt tttgaatagg tctttaggag aggaaatgaa      1560
     ttaccgaata aaaaatacag ggtgccattt aaaaaagtca taccgctgtt catatctttg      1620
     taaaaaacaa agctacaaag aaggcaatca tgctgattaa tgtccccctg acggctaaag      1680
     aacatgtgct tgaaacattt tgtaatttgc atctggacaa acagttattt agggtggtca      1740
     agataaatgg gacaccctg                                                   1759
//
ID   Mariner-34_SIn repbase;    DNA;    INV; 3900 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   04-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-34_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3900
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 398-398 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. ~970bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1265..2461
FT                 /product="Mariner-34_SIn_1p"
FT                 /translation="MVQVNPANILNMLIIFFQISKIPETPVNDREIKLRDM
FT                 IKDIIQSSMNEMLDIETDTTLEFENYWESEFFEADFIVDDEIEKLEEDEDD
FT                 DPTEDSCISEEREMIDDGYKRRTVEFWKSAKRGRYSFPTVKQKFKKLKSMR
FT                 QLYRWEHYIQKGGTSREKKLHISEYVLQNFKEANDEKRIIHDMDLRRWALE
FT                 AKAQIDLPSFKASATWILNFKRKHGIVSRKITKFVNRSAARDKEQLQPACQ
FT                 EFISTVKSYINLFELENIYNAYKSGFNLELHSGRTLTTQGVKTVESIVQSQ
FT                 SATTHSYTIMPIISASGQLKSPLYVVLKEASGSFGPRVEETLFRPANVFVA
FT                 ASKSGKLTTQHFQSWFTNVFVPATGSFSVLLLDSWSGHCPTNLQEFMPKKI
FT                 KIYGF"
XX
SQ   Sequence 3900 BP; 1421 A; 565 C; 625 G; 1289 T; 0 other;
     cttacaaggg aacctctcga agtgtcacac cccgatttta atgaaacttt acacacattt        60
     aggtaacata attagatgat tttagaaact atcagttgcg gcgcatattc ggtttcaagg       120
     ggtgaaatca tcccttatgt gtatagcggt tttcagcttt tttcgttata tctcggaaac       180
     tattcgagat atcaaaaaat gttttataca aaagatttac aataaaatta cctctattca       240
     ttcacgttaa taacattttt ttaaaataat tatttaaaca aattttttta aataattgtt       300
     taaagaatta ttctaaaaaa atattattga caagaataaa tggaggtaat tttatcgtga       360
     aacttttgta tgaaacattt ttttatattt tgaatggttt tcgagatata gcgggaaaag       420
     ctaaaaatcg ctttacacat gaggactgat ttcacccctt aaaacctata ttagcagcaa       480
     ctcatatttt ctaaaatcat ctaattatgt atgtaaagtt ttattaaaat caaggtgtga       540
     cacttcgttt cttggcaata aagcttttag aactttttaa gaaaagtatt aattattaag       600
     aaaatgataa agtgctatca tttccacacc acctgccatg aggtagatta gcatggcgcg       660
     ctttttttat agtggtttcc cccgtaggcc taatccactc tctattccat tctctatttt       720
     ttaatgcacg aattccaaat accatcctca ttctcttgaa agatatatta ttattacata       780
     aaaattcacc caacttttat atgacaaaat atcttttatg ttataatgct acaaaataat       840
     aaaatttttt tattttaaat atgcacaaat tttgatattt ccatggtatc aagatgactt       900
     accgtgccat atatttcctg taatgtatga gaacattttt tattataaac agcgatgaat       960
     gtatttatta taaatataaa aatgaaatta ttgtcacatt atgttgatta attgtatcga      1020
     tcaagtacga acatttttat atcacatgtg atgtacgtgc ttgactgatg aaattaatta      1080
     acgtgtcgtt agcgtcattt ttatgtacgt gcctgataag aataaataat acagtgatat      1140
     cacttgatat tactatataa gtcacagaaa acttgcaata aatttagtat aacacataat      1200
     cagcaagtgt aacgagtaag tataacgagt tcaagtgcaa agtcaaacag tggaaattgt      1260
     caaaatggta caagtgaatc ctgcaaatat tctcaatatg ttaattattt ttttccaaat      1320
     ttcaaaaatt ccggaaacac ctgtaaacga tagagaaatt aaactacgcg atatgataaa      1380
     ggatattata caatcttcaa tgaatgaaat gttagatatt gaaactgata ctacgttaga      1440
     atttgaaaat tattgggaat cagaattttt tgaggcagat tttatcgtgg atgacgaaat      1500
     agaaaaactc gaagaagatg aagacgatga tccaacagaa gatagttgta tatcagaaga      1560
     acgggaaatg atcgatgatg gctataaaag aagaactgtt gaattttgga aaagtgcaaa      1620
     aagagggcgg tattcctttc caacggtaaa acaaaaattt aagaagttga agtctatgcg      1680
     gcaactatat cgatgggaac attacataca aaagggaggt accagtagag aaaagaagtt      1740
     gcatatttcc gaatatgtct tacaaaattt taaagaagct aatgatgaaa aaagaattat      1800
     tcatgatatg gatctacgac gatgggcact agaagccaaa gcacaaatcg atcttccttc      1860
     atttaaagct agtgcaacat ggatattaaa ttttaaaaga aaacacggaa ttgtgtcaag      1920
     aaaaataaca aaatttgtaa atcgttctgc agcaagagat aaagagcaat tacaacctgc      1980
     ttgtcaggaa ttcatatcta ctgtaaaatc ttacataaat ctttttgaat tagagaatat      2040
     atataatgca tacaaaagtg gattcaattt ggaattacat tcaggcagga cattgaccac      2100
     gcaaggtgtt aaaacagtag aaagcatagt tcaatcacaa tcggcaacta cgcacagtta      2160
     tacaattatg cccataattt ctgcaagcgg acaattgaaa tcgcctctct acgtggtatt      2220
     gaaagaagcg agtggaagtt tcggaccacg tgtagaagaa actttgttta gacctgcaaa      2280
     tgttttcgtt gcagcatcaa aatctggcaa attaactaca caacactttc agtcttggtt      2340
     tacaaatgtg tttgtacccg ctactggaag ttttagtgtg ctgttgttag attcttggag      2400
     cggacattgt cctaccaatc tgcaagaatt tatgccaaaa aagataaaga tatacggatt      2460
     ttaactatac caaagaaaac tacgggaatg attcaacctc ttgatgttta tggatttaga      2520
     atatggaaaa actttgtgag aacattcagt gatcgcgtta tgttattaaa ttatgatatt      2580
     aatttacatt tgagaaataa tatcatcaaa ttgcaatctt taacgcatat acagctatct      2640
     tctccgcgat ttcataatct ttttaaatat gcctggttta aaagtggata catcgaggaa      2700
     cggccgtcac atttcgaaaa tccagtcgat ttttgtttct ctggaaagga tattcaagaa      2760
     ataccactct gctccatatg tggtgcacct gctataatac gatgttcctg gtgcaagaaa      2820
     tatttttgta tggagcattt ttttgaagaa tatcataatt gccaacactt tgtcatataa      2880
     tcatcacgtt agtattaata gcaagattta caattagtta taaaataatc aatataataa      2940
     atacattcat cgctgtttat aataaaaaat gttctcatac attacaggaa atatatggca      3000
     cggtaagtca tcttgatacc atggaaatat caaaattcgt gcatatttaa aataaaaaaa      3060
     ttttattatt ttgtagcatt ataacataaa agatattttg tcatataaaa gttgggtgaa      3120
     tttttatgta ataataatat atctttcaag agaatgagga tggtatttgg aattcgtgca      3180
     ttaaaaaata gagaatggaa tagagagtgg attaggccta cgggggaaac cactataaaa      3240
     aaagcgcgcc atgctaatct acctcatggc aggtggtgtg gaaatgatag cactttatca      3300
     ttttcttaat aattaatact tttcttaaaa agttctaaaa gctttattgc caagaaacga      3360
     agtgtcacac cttgatttta ataaaacttt acatacataa ttagatgatt ttagaaaata      3420
     tgagttgctg ccaatatagg ttttaagggg tgaaatcagt cctcatgtgt aaagcgattt      3480
     ttagcttttc ccgctatatc tcgaaaacca ttcaaaatat aaaaaaatgt ttcatacaaa      3540
     agtttcacga taaaattacc tccatttatt cttgtcaata atattttttt agaataattc      3600
     tttaaacaat tatttaaaaa aatttgttta aataattatt tttaaaaaat gttattaacg      3660
     tgaatgaata gaggtaattt tattgtaaat cttttgtata aaacattttt tgatatctcg      3720
     aatagtttcc gagatataac gaaaaaagct gaaaaccgct atacacataa gggatgattt      3780
     caccccttga aaccgaatat gcgccgcaac tgatagtttc taaaatcatc taattatgtt      3840
     acctaaatgt gtgtaaagtt tcattaaaat cggggtgtga cacttcgaga ggttcccttg      3900
//
ID   Mariner-35N1_SIn repbase;    DNA;    INV; 1452 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.02, Created)
DT   17-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-35_SIn; Mariner-35N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1452
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 399-399 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Termini are not determined.
XX
SQ   Sequence 1452 BP; 431 A; 290 C; 290 G; 440 T; 1 other;
     gtacacgcac cggcataaat ggtgtctctc cgcgctgacg ctcggctgcc gcacacacgc        60
     gagctacgcg aggcgcgcac gtacgtgttt cgtggcagcg cggcggaggt cggggtgccg       120
     gcagaaagta gtggggggcg tttcgatacc gcatcttcct cgctcgacgc tggatcgaga       180
     gagaagacac ggaatcgcgg cgctcgagaa actgacagaa atggtatccc ttgcgcctat       240
     acggctggta tacgggatac cgcggttcgt cgcgcgctgt tgtaattttt aattgcataa       300
     agaaatttac tcggatacga atattcgttt gaaaaataat gtaaatagaa ttacgatttt       360
     taataataaa ttaaaattat gtcatcacgg caatacagca cttacacgaa gagaaaaatt       420
     ttcttcatct aagcaaatta tgtctgttta agatcataaa ttcttccaag aagattttat       480
     attgttgctt atatatgaaa caatgaattg ttgagttgac atttaatttt tttctgtaca       540
     gtaataaatt aaaattatgt catcacggca atatatttta gcttcaattt gtgggactat       600
     tactttacgt agagacataa ttttaattaa ttaatgaatg taaatctctt tacttactta       660
     ttaaaataat ctgtattaga aaataatttt aattcgatta atttatagat atgttaacat       720
     tatcgggcaa gccagtttac tttgtaattg aggtaaaaca atactcggag aagtgacaga       780
     cttcttcata ttttgacgtt acaaattact gtacaaaatt taagaaaaat cagacgttca       840
     ttcggctcct ctctcagagt attgttttac gccaattaca aagtaaactg gcttgcccga       900
     taatgttaac atatctataa attaatcaaa tggttaactt aacaattcat tgtttcatat       960
     ataagcaaca atataaaatc ttcttggaag aatttatgat cttaaacaga cataatttgc      1020
     ttagatgaag aaaatttttc tcttcgtgta agtgctgtat tgccgtgatg acataatttt      1080
     aatttattat taaaaatcgt aattctattw acattatttt tcaaacgaat attcgtatcc      1140
     gagtaaattt ctttatgcaa ttaaaaatta caacagcgcg cgacgaaccg cggtatcccg      1200
     tataccggcc gtataggcgc aagggatacc atttctgtca gtttctcgag cgccgcgatt      1260
     ccgtgtcttc tctctcgatc cagcgtcgag cgaggaagat gcggtatcga aacgcccccc      1320
     actactttct gccggcaccc cgacctccgc cgcgctgcca cgaaacacgt acgtgcgcgc      1380
     ctcgcgtagc tcgcgtgtgt gcggcagccg agcgtcagcg cggagagaca ccatttatgc      1440
     cggtgcgtgt ac                                                          1452
//
ID   Mariner-35_AEc repbase;    DNA;    INV; 1356 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-35_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1356
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 581-581 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           165..1256
FT                 /product="Mariner-35_AEc_1p"
FT                 /translation="MESSTSRPATSIPIPSRVVLRGIIQFLFAQDFKSVDI
FT                 HKQLVSVYGESVMSESMVRRWVREFKAGRHSLEDESGRGRPSLITDELTTK
FT                 IENAIRNDRRLTLDELHNLFPEISRSLIHEIVSEKLEFRKVCARWVPRELT
FT                 PLHKATRVTAGKEFLDRYRDEGNDFLKSIVTGDETWVAHYTPENKRQSMQW
FT                 KHTYSPTAKKFKVVKSVKKIMVSLFWDQKGILLIDFLPQGATINAERYCET
FT                 LKKLRRAIQNKRRGMLTAGVSLLHDNARPHVAASTTALLNQFSWDVLTHPP
FT                 YSPDLAPSDYHLFTKLKESLAGKRFQSDEEVQTAVTNWTKELAGSFYAEGI
FT                 SKLVSRYTKCIEIDGNYVEKD"
XX
SQ   Sequence 1356 BP; 404 A; 278 C; 318 G; 356 T; 0 other;
     tacgaggggt atccagaaaa taagttccgt ttgtattata cgtttagtaa ggtcgatgta        60
     tgagcgagct ggcaacacag cattgaagag gggaagctac cgaatagaat gagcggtgtt       120
     cggcgtcagt agctcgtgaa acacggtcag gagaggttat caaaatggag tcctccactt       180
     cgcgtcccgc cacctccatt ccgattcctt ctcgagttgt tttgcgcggc atcattcagt       240
     ttctttttgc tcaagatttt aaatcggttg atattcacaa acagcttgtt tctgtatatg       300
     gagagagtgt gatgagtgaa tctatggtgc ggagatgggt ccgagaattt aaggcaggaa       360
     gacattcgct tgaagacgaa agtgggagag gcagaccctc ccttatcacg gatgagttga       420
     cgacaaaaat tgaaaatgcg attcgcaatg atcgtcgttt aactttagat gaactccaca       480
     acctttttcc agagatatcc cgaagtctta tccatgagat cgtttcagaa aaactcgaat       540
     ttcgcaaggt ttgcgcccgt tgggttccca gagaactgac tcctctacac aaggccacac       600
     gagtgactgc aggtaaagaa tttttggacc gttacaggga tgagggaaat gacttcctta       660
     aatctatagt cactggagac gagacctggg tcgcccatta cacaccagaa aacaaaagac       720
     agtcaatgca atggaagcac acctattctc caactgcaaa gaagttcaaa gtggtcaagt       780
     ccgtcaaaaa aatcatggtt tctctcttct gggaccaaaa aggaattctg ctgattgatt       840
     ttttgcctca aggagcaaca ataaatgcgg agcgctattg tgaaactttg aaaaagctgc       900
     gtcgggccat tcagaacaaa agaaggggga tgttgacggc aggtgtgtcc cttcttcacg       960
     acaatgctcg gccgcacgtc gctgcttcaa caactgcact tttgaatcag tttagttggg      1020
     atgttttgac ccacccaccg tatagcccgg atctagcacc atcggactac catcttttta      1080
     cgaaactgaa ggagtccttg gccggaaaac gcttccaaag cgacgaggaa gttcagacag      1140
     ctgtaactaa ctggactaaa gaactggcgg gaagtttcta tgcagaaggg atttcgaagc      1200
     ttgtttccag atatacaaaa tgtattgaga ttgacgggaa ttatgtagaa aaagactaga      1260
     agttgtcaag tattatccat gtaaatttta gattttttca ataaaaactt tattcgtaaa      1320
     aaaaaaacgg aacttatttt ctggataccc ctcgta                                1356
//
ID   Mariner-35_HSal repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-35_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 875-875 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           418..1212
FT                 /product="Mariner-35_HSal_1p"
FT                 /translation="LKITPRYTTREIAEIINVSQKTVVNHLHTLGYVSRYD
FT                 IWVPHNLSEKNLMDRISICDLLLKRNENVPFLKRMITGDEKWIVYNNVERK
FT                 RSWGKRDEPPQTTPKQNIHTKKVMLCIWWDWKGIVYYELLPQNQTIDSNKY
FT                 CSQLDCLKAAIDEKRPELSNRYGVIFHQDNARPHVSLATRQKLLQLGWDVL
FT                 PHPPYSPDLAPSDFHLFRSLQNSLNGKNFTSLEACKKHLEQFFAQKTGKFW
FT                 EDGIFNLPERWRKVIEQNGAYIVH"
XX
SQ   Sequence 1286 BP; 401 A; 248 C; 281 G; 356 T; 0 other;
     ttgggttgag taaaaagtaa tttcgtattt tgcgggcaga tggcgttaag aggaagtgtt        60
     tagtgcaatc ttcactcaat atctgacacc atatattttt ctgaaaggtt aggttttcct       120
     gcgtatttta agctgttatt tgtcaaaatc tattcagtaa tttttatttg gcgacattgt       180
     aaacatggag caaaacaagc agtattttcg gtgtttgatg cttttctatt ttcgcaaagg       240
     gaaaaatgcg acgcaaacca aaaaaaaaga tatgtgctgt gtatggagaa gatgccgtaa       300
     gcgaacgtgt gtgccaaaac tggtttgcga aatttcgtgc tggtgatacg acatgtcaag       360
     atggtgagcg ctcaggtagg ccattggtgg ttgatgacga ccaaatcaag acattgattg       420
     aaaataaccc cacgttatac gacacgagag atcgcagaga taatcaacgt atctcaaaag       480
     accgttgtga accacttgca cacgcttggc tacgtgtctc ggtacgatat ttgggtacct       540
     cacaatttga gcgaaaaaaa tttaatggac cgcatctcca tctgcgattt attgctcaaa       600
     cgcaatgaaa acgttccatt tttaaaacgg atgataacgg gcgacgaaaa gtggattgtg       660
     tataacaatg tagagcgcaa aagatcgtgg ggaaaacgag atgaaccgcc gcaaaccaca       720
     ccgaagcaaa acatccatac gaaaaaagtc atgctgtgta tttggtggga ttggaaagga       780
     atcgtgtact acgagctgct tccgcaaaac caaacaattg attccaacaa gtattgttcc       840
     caattggact gtttgaaggc agcaatcgat gagaagcgtc cagaattgag caatcgttat       900
     ggtgtcatat tccaccaaga caacgctaga cctcacgtat ctttggcaac ccggcaaaaa       960
     ttattgcagc ttggctggga tgtcttgcct catcctccgt attcacctga cctggcacca      1020
     tcagacttcc acttattcag gtctctgcag aattccctca atggaaaaaa tttcacttct      1080
     ttggaggcct gcaaaaagca tcttgagcag tttttcgccc agaaaactgg gaagttctgg      1140
     gaggatggaa tctttaattt gcctgaaaga tggcgaaagg ttatcgaaca aaacggtgca      1200
     tacattgttc attaaaggta ttttttaata cgaaaatgtc tttgaatttc acctaaaaat      1260
     acgaaattac tttttactca acccaa                                           1286
//
ID   Mariner-35_LMi repbase;    DNA;    INV; 1889 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1889
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 30-30 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           463..1512
FT                 /product="Mariner-35_LMi_1p"
FT                 /translation="MSLTHEERIEIILISGERSTRVIAEDFNSRHPTRQPI
FT                 THSAVAKLLAKFRATGSVADKPKAGRPKSATDEATTVSVLASFSKSPQRST
FT                 RRLSQECGVSRTSILRILSQHKWHPYKVQLLQHLNEDDPDRRVQFAEWVTQ
FT                 QLQINPRFPYQVLFSDEANFFINGEVNKQNHRYWSDTNPHWIDASKTVDSQ
FT                 KVMVWCGVWGTKVVGPFFIDGTLIANGYLRLLDEDVFPSLLTEDGTFPEFF
FT                 QHDGAPPHYGHNVRAYLDVQFPQKWIGRRGAVEWPPRSPDLTPLDFYLWGH
FT                 VKALVYSVKIRDLHHLKQRIVDACGQIQPDVLVKVHQDWVRRIALTIQNNG
FT                 QHIEPFL"
XX
SQ   Sequence 1889 BP; 523 A; 418 C; 445 G; 503 T; 0 other;
     cagggtggtc caaaagtcca gaaacaccct gataaaatcc aaatggagta gcaaacaagg        60
     aaacagagtc cctacacatg aggaacagga ggggggaaac ttataggcta tgccaccaac       120
     atggcggcca tcttgaaagc cgccatcttg gattcaactc caaaatttca aatgggaatg       180
     tggtcatgtg acatatcaaa cagatagaga atttcaccag aaaaacaatg ccgttgttat       240
     tttaaacata gctttattca ttctcgagtt atagccaatt acttgcggca gcagtgggac       300
     gctcggcagc gtgcgtatta cgtactgaga agtcataaaa tggagtttga aacggtgcaa       360
     agtgactatc ccatgcctga tatgttacat gtgtttaaat gttaggtatc atttactcat       420
     gctaacgttt taatcattgt ttccttattt acaggttaca aaatgtcctt aacacatgaa       480
     gaacgcattg aaatcatctt gatatcagga gaaagaagca cacgggtcat tgctgaggat       540
     ttcaacagtc gtcacccaac cagacagccc atcactcaca gcgcagttgc caagcttttg       600
     gccaaattcc gagcaacagg ttctgtcgca gataaaccga aggctggaag accaaaatcc       660
     gccaccgatg aagcaacaac agtgagcgtg ttggcatcat ttagcaagag tccgcaacgg       720
     agtactcgtc gcctgtcaca agaatgtggg gttagccgta cctccatact gcgaatttta       780
     tcgcagcaca aatggcaccc gtacaaagtt cagctgctcc aacacctgaa cgaggatgac       840
     ccagaccgtc gggtacagtt cgcagaatgg gtgacacagc agctgcagat aaacccacgt       900
     ttcccctatc aggtgctgtt cagtgatgaa gccaatttct ttatcaatgg tgaagtgaac       960
     aagcagaatc acagatactg gtccgacaca aatccgcact ggattgatgc ttccaaaacg      1020
     gtcgactcac aaaaagtgat ggtctggtgt ggtgtgtggg gtaccaaagt cgtgggacct      1080
     ttttttattg atggtacgtt aatagccaac ggttatctga ggttattgga tgaagacgtg      1140
     tttccctcgt tgttaacgga ggacgggaca tttccggaat tcttccagca tgatggagcc      1200
     ccaccacatt atgggcacaa tgtgcgagca tacctggatg tgcagttccc tcaaaagtgg      1260
     attggtcgta ggggtgctgt ggagtggcca ccacgttcac cagatttgac tcctttggat      1320
     ttttatcttt ggggtcatgt caaagcactg gtttattctg tgaaaatacg ggatttgcat      1380
     catctaaagc agcgcattgt tgatgcgtgt ggtcaaattc agccagatgt gttggtcaaa      1440
     gtgcatcagg actgggttcg gaggatagca ttaacaatcc aaaataatgg acaacatatc      1500
     gagccattcc tatgactgtt ggtggtctct cgggactgtg taacatcggc gtaatgtctc      1560
     ttcggcacat aacacacatg ctgccgagcg tcccaccgct gccacatgta actggctata      1620
     actcgagaat gaataaagct atgtttaaaa taacaacggc attgtttttc tggtgaaatt      1680
     ctctatctgt ttgatatgtc acatgaccac attcccattt gaaattttgg agttgaatcc      1740
     aagatggcgg cttcaagatg gccgccatgt tggtggcata gcctataaag tttccccctt      1800
     cccgttcctc gtgtgtaggg actctgtttc cttgtttgct actccatttg aattttatga      1860
     gggtgtttcc ggacttttgg accaccctg                                        1889
//
ID   Mariner-35_SIn repbase;    DNA;    INV; 3094 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.02, Created)
DT   17-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-35_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3094
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 400-400 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           1100..1867
FT                 /product="Mariner-35_SIn_1p"
FT                 /translation="MPQNLSCQKRGRIVGQAQGGKSVAEIAADIPCSEKTV
FT                 RRWIRRFAEGGDDALSDHRLHNRRPRKIGADEVEAIVAAAADRPFGSVREF
FT                 SNAADVDVSERTVRRRLNEAGYRCYRPAYKIPLTPVHREQRIAFALENSVT
FT                 SREEWEATIWTDEKVFVSSADRQPHVWRLRDQRLHPNHVVPLHRSGRISCA
FT                 MWGWISGTTVGELVETPTRMNSQDYIRILEEVLLPSVRAVYSVEDMPVIRL
FT                 VQDNSAVHTSRETQT"
XX
SQ   Sequence 3094 BP; 886 A; 659 C; 682 G; 865 T; 2 other;
     tgtacacgca ccggcataaa tggtgtctct ccgcgctgac gctcggctgc cgcacacacg        60
     cgagctacgc gaggcgcgca cgtacgtgtt tcgtggcagc gcggcggagg tcggggtgcc       120
     ggcagaaagt agtggggggc gtttcgatac cgcatcttcc tcgctcgacg ctggatcgag       180
     agagaagaca cggaatcgag gcgctcgaga aactgacaga aatggtatcc cttgcgccta       240
     tacggccggt atacgggata ccgcggttcg tcgcgcgctg ttgtaatttt taattgcata       300
     aagaaattta ctcggatacg aatattcgtt tgaaaaataa tgtaaataga attacgattt       360
     ttaataataa attaaaatta tgtcatcgcg gcaatacagc acttacacga agggaaaaat       420
     tttcttcatc taagcaaatt atgtctgttt aagatcataa atttttccaa gaagatttta       480
     tattgttgct tatatatgaa acaatgaatt gttgagttga catttaattt ttttctgtac       540
     agtaataaat taaaattatg tcatcacggc aatatatttt agcttcaatt tgtgggacta       600
     ttactttaca tagagacata attttaatta attaatgaat gtaaatctct ttaattactt       660
     attaaaataa tctgtattag aaaataattt taattcgatt aatttataga tatgttaaca       720
     ttatcgggca agccagttta ctttgtaatt ggcgtaaaac aatactccga gagaggaccc       780
     gaatgaacgc cggtctgatt tttcttaaat ttcgtacagt aatttgtaac gtcaaaatgt       840
     gaagaagtct gtcacttctc cgaatgcccc acatccttct cgcttgacga gagccgagag       900
     agaaagcatg ataccatctc tcgcgacgcg gcgtcaggcc ccgggaggac gtattttgtt       960
     ttctctctat ctctttcgct cgtgcgtcta aagacaataa cgcatctaac aagagactag      1020
     caagagacat cgcgaaatat gttttctgca gctcattttc cgtggtgttc ttgcacagtg      1080
     cggtgtattc gcgagtaaaa tgcctcaaaa cttgtcctgc cagaagcgag gtcgcatcgt      1140
     cggacaggct cagggcggaa aatcagtagc agaaattgct gctgatattc cgtgttctga      1200
     aaaaactgtc cgacgatgga tacgacgttt cgcagaaggc ggtgatgacg ctttgagtga      1260
     tcatcgtctg cataatcgtc gtccccgtaa aatcggtgcc gacgaagtag aggcgatcgt      1320
     cgctgcggct gctgatcgac cgttcggtag cgttcgggag ttcagcaacg cagctgacgt      1380
     ggatgtatct gagaggaccg tccggcgtcg tcttaacgaa gctgggtatc gctgttaccg      1440
     tccagcctac aaaattccgc tgactcctgt tcatcgggag cagcgaatcg cgttcgcttt      1500
     ggagaacagt gtgacgagcc gtgaggagtg ggaggcaacg atctggaccg atgaaaaggt      1560
     ctttgtatcg tctgctgacc gccaacctca tgtatggcga ctaagagatc aacggttgca      1620
     tccaaatcac gttgtgcccc tccacagaag tggaaggatt tcatgcgcaa tgtggggctg      1680
     gatttccggc actactgtcg gcgaactggt ggaaactccc acacgcatga actctcagga      1740
     ctatattcgc atactggaag aagttcttct tccttcagta cgcgcagtat attccgtaga      1800
     ggacatgccg gttatacgac tagtgcaaga taattccgca gtccacactt cgcgtgaaac      1860
     acaaacgtag tttcggaatc atccggagat acaattagtg aactggcctg ctcgttcacc      1920
     agatctaaat ttaatcgaaa atgtttgggc ccaaatggtt cgacgatggg aaccaagaag      1980
     ggagaggacg gtagcagcgt tagttaatca cgcgagagaa gtctaggaag aacttcggtt      2040
     ccamccagac ttccttgcaa acttgattga ttcgatacct aatcgactca atcaagtgat      2100
     tgaccggtct ggatactgga ccgactatta aaatatgccg cgcttgcacc acgatcggcc      2160
     cttttcaggg ccaataaaac ttccatacca aatagggacg cttatagaag cgttagaata      2220
     tgacagggcc cgacgccgcg tcgcgagaga tggtatcatg ctttctctct cggctctcgt      2280
     caagcgagaa ggatgtgggg cattcggaga agtgacagac ttcttcatat tttgacgtta      2340
     caaattactg tacgaaattt aagaaaaatc agacgttcat tcgggtcctc tctcggagta      2400
     ttgttttacg ccaattacaa agtaaactgg cttgcccgat aatgttaaca tatctataaa      2460
     ttaatcgaat taaaattatt ttctaataca gattatttta ataagtaatt aaagagattt      2520
     acattcatta attaattaaa attatgtctc tatgtaaagt aatagtccca caaattgaag      2580
     ctaaaatata ttgccgtgat gacataattt taatttatta ctgtacagaa aaaaattaaa      2640
     tgtcaactca acaattcatt gtttcatata taagcaacaa tataaaatct tcttggaaaa      2700
     atttatgatc ttaaacagac ataatttgct tagatgaaga aaattttttt cttcgtgtaa      2760
     gtgctgtatt gccgcgatga cataatttta atttattatt aaaaatcgta attctattta      2820
     cattattttt caaacaaatm ctcgtatccg agtaaatttc tttatgcaat taaaaattac      2880
     aacagcgcgc ggcgaaccgc ggtatcccgt ataccggccg tataggcgca agggatacca      2940
     tttctgtcga gtttctcgaa cgcctcgatt ccgtgtcttc tctctcgatc cagcgtcaag      3000
     cgaggaagat gcggtatcga aacgcccccc actactttct gccggcaccc cgacctccgc      3060
     cgcgctgcca caaaacacgt acgtgcgcgc ctcg                                  3094
//
ID   Mariner-36_AEc repbase;    DNA;    INV; 1260 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.03, Created)
DT   28-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-36_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1260
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 582-582 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(161..619,630..1184)
FT                 /product="Mariner-36_AEc_1p"
FT                 /translation="MLKAMSFEKQHLRHCLLFAFQLKKSAAEAQEMICSAL
FT                 GEDAVSYSTCKKWFQRFKSGNFDLNDEKRPGQPKKVNDEELEQLLEENSCR
FT                 TQSELAQELGVTRQAISKRLHKLGRIQKEGHWVPHELTAENKRRRYDIAVS
FT                 CYPDSKRRIFCTRLRKMDPLRKSWVYPGQPSNSTAKPNIHAKKVLLCIWWD
FT                 QQGVIHYELLQPGETVTAQRYQQQLIRVSDALEEKRPYTGKGRRKVILLQD
FT                 NARSHTAKTTLKTITDLGWEILSHPAYSPDFAPSDYHLFKSLQHHLTDTHF
FT                 TYVKDVEKSMVEFINSKQPSFFRSGIRQLPERWRKCIENEGDYFED"
XX
SQ   Sequence 1260 BP; 388 A; 260 C; 281 G; 331 T; 0 other;
     ttaggtgcgc aacttaattc tcggccccta acttcaatcg atgagtacct attcaaattt        60
     acatatcttt cccgccatat agtcatattg gagcgccatc tttaagcttt caaacgcact       120
     gtaattgttg gcggttgtac tatctaactt aaaaaaaaaa atgttaaaag caatgtcgtt       180
     cgagaagcag catttgaggc attgccttct tttcgctttt caattaaaaa aaagtgctgc       240
     tgaagcacag gaaatgattt gttcggcttt gggagaggat gctgtttctt acagtacctg       300
     taaaaagtgg ttccagcggt ttaagagtgg aaatttcgac cttaatgatg aaaaacgtcc       360
     gggacagcca aagaaagtca acgatgagga actggaacaa cttttggaag agaattcctg       420
     tcgcacacag tcagagctcg cacaggaact cggagtaaca aggcaagcca tttctaagcg       480
     tctacataag ctggggagga ttcaaaagga gggccattgg gttccccacg aactcacagc       540
     tgagaacaag cgtagacgct atgatattgc tgtgtcttgc tatcccgatt caaaaagaag       600
     gattttctgc acaagattgt gacctgtgac gaaaaatgga tcctctacga aaatcatggg       660
     tttatccggg acagccttcg aatagtaccg caaaaccgaa tatccacgcc aagaaggtgt       720
     tgctgtgtat atggtgggat cagcagggcg tcattcatta cgaattgctc caacctggtg       780
     aaacggtcac tgctcaacgt tatcagcagc aactgattcg tgttagtgac gcattggagg       840
     agaaaaggcc ttacaccggc aagggaagaa ggaaggtcat cttgcttcag gataacgcgc       900
     ggtcacacac agcaaaaacg actttgaaaa cgatcaccga cttgggctgg gaaattttat       960
     cgcacccggc gtattctcca gacttcgccc cttcagatta tcaccttttt aaatccttgc      1020
     aacatcatct gactgatact catttcactt atgtcaagga tgtcgagaaa agtatggtcg      1080
     aatttataaa ttcaaaacaa ccctcttttt tccgaagtgg aattcggcag cttcccgaaa      1140
     gatggcgcaa atgtatagaa aacgagggag attattttga agattaggta actattcgac      1200
     tttttataaa ttagtatcaa agttcaatga aaaaggccga gaattaagtt gcgcacctaa      1260
//
ID   Mariner-36_HSal repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-36_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1290
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 876-876 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1211
FT                 /product="Mariner-36_HSal_1p"
FT                 /translation="MENQNEHFRHILLFYFQKGKNAVQARQKLCAVYGEES
FT                 LTERQCQRWFARFRSGDFSVKDAPRSGRPIEVDDDKIKALLESNRHYTTRE
FT                 IAEKLNVSHTSIENHLKQLGYVNKLDIWVPHELKEIHLTKRINISDSLLKR
FT                 EQNDPFLKRMLTGDEKWIVYDNVERKRSWSKRDEPPQSTSKADIHQRKILL
FT                 SVWWDYKGIVFFELLKRNQTIDSELYCRQLDKLHEAIKQKRPELVNRKDVV
FT                 FHHDNARPHTSLVTRQKLLQLGWDVLPHPPYSPDLAPSDYHLFRSLQNSLK
FT                 GKKFDSDEAIKRYLDQFFADKDQKFYEAGIMKLPNRWQKVIELNGQYITE"
XX
SQ   Sequence 1290 BP; 418 A; 259 C; 260 G; 353 T; 0 other;
     tcaggttggc aacaaagtca tgtcgttttt cacggataga tggctttact tgtcattaaa        60
     cgcaactaac ttcactccaa atcctataac ctttatatca tttgacagct gacatttcaa       120
     gctttcttta aaaaaaaaaa gtgcgtcatt cggtaaagaa ttgtttgttt ggcattgagt       180
     taaaaatgga aaatcaaaac gagcatttcc gccatatttt acttttttac ttccaaaaag       240
     gaaagaacgc tgtgcaagcc cgtcaaaagt tatgtgctgt gtatggtgag gaatccttaa       300
     cagaacgcca gtgtcagcgt tggtttgctc gttttcgttc aggagatttt tctgtgaaag       360
     atgcaccacg gtcaggccgg ccaattgagg tcgatgacga caaaataaaa gcattgcttg       420
     aatccaaccg ccattatacg acacgggaga tcgctgagaa gctaaacgta tcacatacga       480
     gcattgaaaa ccatttaaaa caacttggat acgtcaacaa actcgatatt tgggttccac       540
     acgagctcaa agaaattcat ctcaccaaac gcatcaatat cagcgattct ctcctgaaac       600
     gtgagcaaaa cgatccgttt ttgaaacgaa tgttaactgg cgatgaaaaa tggattgttt       660
     acgacaatgt ggaacgaaaa agatcgtgga gcaaacgtga tgagccgcca caaagcactt       720
     ctaaagcaga cattcaccaa aggaagattt tgctatctgt ttggtgggat tacaagggta       780
     ttgtgttttt tgaactgctt aaacgtaatc aaacgattga ttcggaattg tactgtcgtc       840
     aattggacaa attacacgaa gcaatcaagc agaagcgccc agaactggtg aatcgtaaag       900
     atgttgtctt tcaccatgac aacgctagac cacatacatc gttggtcacc cgccagaaat       960
     tgttgcagct tgggtgggat gtgttaccac acccaccata ttcgcctgac cttgcaccat      1020
     cagattacca tttatttcgt tccttgcaaa attccttgaa gggaaaaaaa ttcgattctg      1080
     atgaggctat caaacggtac ttggatcagt ttttcgccga taaggaccag aagttctatg      1140
     aggccggaat catgaagcta ccaaacagat ggcaaaaggt cattgaatta aacggacaat      1200
     atattacaga ataaagtttt tgctttgtat gaaaaaatcg cttttcattt acatagaaaa      1260
     aaaaacgaca tgactttctt gccagcctga                                       1290
//
ID   Mariner-36_LMi repbase;    DNA;    INV; 1351 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1351
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 31-31 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1229
FT                 /product="Mariner-36_LMi_1p"
FT                 /translation="MATSERKAFCVLQFAKTESVVTVQRAFRLKFGCDPPS
FT                 DNNIRRWYHQFQDTGCLCKGKSTGRPRVSEETVERVRESFTRSPKKSVRKA
FT                 SRELQVPVSTVWKVLRKRVQLRPYRLQLLQALKPTDHGLRANFANDMLFHD
FT                 DDDFLDHVVFSDESTFHLSGHVNTHNVRIWGSENPHEMVQMQRDSPKVTVF
FT                 CAISRRKVYGPFFFGEPTVTGTSYLDTLEQWLFPQLEEDEPENFIFQQDGA
FT                 PPHWHSEVRDWLNVTVPKRWIGRKGPNDRACFAWPPRSPDLTPCDFFLWGF
FT                 IKDRVYVPPLPADLPELRNRIEAAVATITEDTLINVWEELGYRLDVCRVTN
FT                 GAHIEHL"
XX
SQ   Sequence 1351 BP; 369 A; 286 C; 310 G; 386 T; 0 other;
     cagggtgttt ataaatgaat atcggggttt taacgcttta taatatttat tatattaaac        60
     ttagttataa atgatatgtc aaatgaaaga gcaactcaaa cagttttgtt tggcaccagt       120
     gcgcatgcgc agcgcgcaat gtttccgccg caatccgcta gacagcggta gtagcaaaga       180
     tggcgactag tgaacggaaa gcgttttgtg ttttgcagtt tgcaaagacc gaatctgttg       240
     ttactgtgca acgtgcgttc cggctgaagt tcggttgtga tcctccaagt gataataaca       300
     ttcgtagatg gtatcatcag tttcaagata ccggctgcct ttgtaaaggg aagagcacgg       360
     gacgaccaag agttagtgaa gagactgttg agcgagtgag agagtcgttc actcgtagcc       420
     caaagaaatc agtccggaag gctagtcgtg aattacaagt tcctgtgtcg actgtttgga       480
     aagttttaag aaaacgcgta caactacgtc cttaccgttt acagttatta caggctctaa       540
     agccgacaga ccacggatta cgtgccaact tcgcaaacga catgttgttt catgacgatg       600
     acgattttct ggatcatgtt gtcttcagtg atgaatcgac ctttcacctt agtggacatg       660
     ttaacactca caatgtgcgc atctggggct cagaaaatcc tcacgagatg gtacaaatgc       720
     aacgagattc ccctaaagtg actgtttttt gtgccatatc ccggcggaaa gtttatgggc       780
     ctttcttttt tggtgaacct actgtaactg gcacttctta ccttgataca ctagagcaat       840
     ggctcttccc tcagttggaa gaagatgagc cagagaactt cattttccag caagatggtg       900
     cgccacctca ctggcatagc gaagtacgcg attggttgaa tgtcactgta cccaagcgct       960
     ggataggccg caaggggccc aatgacaggg cttgctttgc atggcctcca cgttcacccg      1020
     acctaacgcc atgcgatttt ttcctttggg gcttcatcaa ggatcgtgtg tacgtgcctc      1080
     cgctaccagc tgacctccct gaattaagaa accggattga agcagctgtt gctacaatca      1140
     ctgaagacac acttatcaac gtttgggaag aactcggcta tagacttgat gtgtgccgtg      1200
     tgacaaatgg tgctcacatt gaacatttat aaggttcttg gtaaaactgt ttgagttgct      1260
     ctttcatttg acatatcatt tataattgta agtttaatat aataaatatt ataaagcgtt      1320
     aaaaccccga tattcattta taaacaccct g                                     1351
//
ID   Mariner-36_SIn repbase;    DNA;    INV; 3856 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-36_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3856
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 401-401 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1060..2643
FT                 /product="Mariner-36_SIn_1p"
FT                 /translation="MQFNPRNVIMLLMSASFLNMPLTPTTKKEMEVQQKIE
FT                 NLLQNIYENELEVEEEESLDFENSFDISETNLITDEEWNEAEQPTYDVKEM
FT                 TCENDMIPIEYKRRAVEFWRPDGSVRPKSFESVKHKFRKLTSPRELRRWQE
FT                 QVNRGGTRLEKLKEISSYTLNKFEEAVQNGIIIHDIDIARWALKAQQEINC
FT                 PGFTASLQWVYRFKIAHRIVSRKVTKFITKRTLQSKDNLEAEGNRFIENVK
FT                 YYITRYGFENIYNSDQSGFQLELHAGRSLAVEGTKKVERVVQSVSATTHSY
FT                 TIQPIISGDGRLLSPLFIVLKEPTGTFGPRVQETMFRENNIFVLASKSGKL
FT                 TSHHFEIWLREVYFPNVGPKSVLLLDSWTGHCPDVIARNRPENAEDIVFLT
FT                 IPAGTTGQRQPLDVYGFRLWKNFVKHFSDVVMLLDLEVKLHSRDSILKLQS
FT                 LTHFQFSSPRFRNLFKYAWYKSGYIDIRPDEFETPVDFCFKTHSKATCDIC
FT                 GGIAVITCAWCRKSLCLKHFFHDHHLCYNYEP"
XX
SQ   Sequence 3856 BP; 1325 A; 559 C; 646 G; 1325 T; 1 other;
     tacgtaactc ttgaatctat acatgtcaaa gtcaatactg ccgagacgta aacattctat        60
     ttcaagataa gaaatgaccc aaagtgcacg cgccagtagc gtggttatgc atatttctac       120
     actaatcgaa tttaataaac acattaattg aattgtataa atgcagtata aaagatgaaa       180
     tttctaacta atttttgaat tagttttatg ttagttctct tgttgttagt tgatgagctg       240
     gcgttagata gtgaaggtat ggaatgtgtg agtaataatt ttttgtaatc caagtctcct       300
     tatctgtaaa atgttgaaga gaacaaatat tctagtcgaa tcatgtagac cagtaaataa       360
     atgtttaact tatattaatt acatattatt ttctaaacaa gaaattaatg tcttacaaca       420
     ccgtaattgt tgttattctt cagtgtagtg tcgttttatt ttgtagtaac caagagaaat       480
     ataatcgcaa agaaattaaa tgtcagaggt aaagataaga agatatgaag aatgttcgaa       540
     gtaaggttag tacataatgt aaacatatat cgttagaaca gtggtataaa atgctgtcgc       600
     tttgcgagcg tcagtttagt atacttgatg attttgttgt gtattaatcg ctacgaattt       660
     gtaagtataa taatattttt aatattttta atttttaaaa attaaataat tattttattt       720
     atttaaatat catctattac tttcacaaaa cttactttgt cattaattgg gatattcacc       780
     ttatccttat ttgatatatt tttattatag ctttgcagag aaatatcttg tggaactctt       840
     taatctaaca gaattttttt ttctgacaaa gaaaaacaat ttcaaagtat gtacaatata       900
     tacgatgttt tattacttta agagtgtaaa ttaactattg atctttaata taaataatat       960
     aatataaata taagcaagaa aatagagtgc gtaactacct tttaaatgta attattagtt      1020
     tcactttaaa cacatatatg tttatcattt ttaggtaaaa tgcagttcaa tccgagaaac      1080
     gtaataatgc tgctaatgag tgcttcattt ttaaatatgc ctctaactcc tactaccaaa      1140
     aaagaaatgg aagtacaaca gaaaatagaa aatttgttac aaaatattta tgaaaatgaa      1200
     ttagaagtag aagaagaaga gtctctggat tttgaaaatt catttgacat ttcggaaaca      1260
     aacttaataa cagacgaaga atggaatgaa gcagaacaac ctacgtacga tgtaaaggaa      1320
     atgacatgtg aaaatgacat gattccaata gaatacaaaa gaagagctgt tgagttttgg      1380
     agacctgatg gttcagttag gccaaaatcg tttgagagtg taaaacataa atttcgaaaa      1440
     ctcacatcac cgcgcgaatt acgacgatgg caggaacaag tgaacagagg tggtactaga      1500
     ttggagaagc tgaaagaaat ttcatcgtat acgttaaata aattcgagga agcagtacag      1560
     aacggcatta ttattcatga cattgatatt gctcgatggg cgctgaaagc acaacaggag      1620
     attaactgtc caggatttac agcatcactt caatgggtat atagatttaa gatagcacat      1680
     cgtattgtat cccgaaaagt tacaaaattt ataacgaaga gaactctaca atcaaaagat      1740
     aatctagagg cagaaggtaa tagatttatc gaaaacgtta aatattatat tacgcgttac      1800
     ggattcgaaa atatttacaa ttcggaccaa agcggattcc aattagaatt gcatgccggt      1860
     cgttcattgg cagttgaagg tacaaaaaag gttgaacgcg tagtacaatc ggtgtctgca      1920
     acaacgcata gttatacaat tcagccaata atttcaggcg atggtagatt attatctcct      1980
     ctttttatag ttttaaaaga accaaccgga acatttggtc ctagagtaca ggaaacaatg      2040
     tttagagaga acaatatttt tgttttggct tctaaatctg gcaagttaac atcacatcat      2100
     tttgagatat ggttaagaga agtttatttt cccaatgttg gtccaaagtc ggttttatta      2160
     ttggattcgt ggactggcca ttgtcccgat gtaattgcaa gaaataggcc agaaaatgct      2220
     gaggatattg tttttctaac aataccagcg ggaacaacag gtcagagaca accattagac      2280
     gtatatggtt tccgcttatg gaagaacttt gtaaaacatt tttcggatgt tgtcatgctt      2340
     ctggatttag aagttaaact acattcacga gattctattt taaaattgca atcactaaca      2400
     catttccaat tttcatcacc aaggtttagg aatttgttta aatacgcatg gtataaaagt      2460
     ggatatatag atataaggcc agatgaattt gagacaccag tagacttttg tttcaaaaca      2520
     cattcaaaag caacatgtga tatttgcggc gggattgctg taataacttg cgcgtggtgt      2580
     agaaagagtc tgtgtttgaa acattttttt cacgatcatc acctttgtta taattatgaa      2640
     ccctaaattg tataaattgt atgaacacta aattgtatct ttattcatgt aattttatta      2700
     cattaatgta ttattacaaa atttatctta taactaataa actacatctt ataactaata      2760
     aagagattta atatgtttat tttgatttaa tagaataaat ttgtgtaaat gttaaatctt      2820
     tttttccttt cttcttattt tcctcgtcct ttgatatttt tatctttaat tagctactct      2880
     agcgccataa aggacacctt cctcttcaca agataaaatt tttatttttt tatttctctt      2940
     aatctttttt cttaacttaa caaaggaata agtttttaac gattttcacg agctcgttga      3000
     ctttccctct cccgcatctc tcgtatcgct tgaattatgg ttcctcttcc gccaccgtgc      3060
     cgtctgactt cggcagctgt aagttgatga gttcttgaag aatttgtttc atcgataagc      3120
     ggtcgtacct tattcaccgg gacacttgct ttacaagtgt cgcattttga aggaggccac      3180
     tatagtagat aacaaaataa aaacaataat aataaaaagt acaaataatt aatgttattc      3240
     atgtaaataa taaaagaact tactggaaga ttaggtcgat gaagcgtacc acattttgaa      3300
     catggtatca tcttgcacaa tttaataata taataaatga tgcaaaaagt attcccctta      3360
     attatataat gcaacagaag tttacgtcac tttgaatcat ttatacttta gagtttaatc      3420
     ttccacgttt cgacactatt gatatgtctc ggcattacag atcctattta tatactgaaa      3480
     tgtctagtcg tgaaaatatt ttcctcgata atgcaattcg aggaaactgc acatttacgt      3540
     aacacttgaa tgtgttcatt atattcggat tgcattattc atttgagctt cgcctttgca      3600
     agtcagaacc taaggattgg aactaattat gattaatgtg tgtgtgtgtg ttaattgcta      3660
     ttacgttgtc ttttatttaa tgcgacaaaa atgttttagt caattcagta tatgctgaat      3720
     tcaattgtca agcaaatgta gaaaaattat taaagtcaat tttcttatcg cgtgcacttt      3780
     gggtcatttc ttatcttgaa atagaatgtt tacgtctcgg cagtattgac gkatgcatag      3840
     attcaagagt tacgta                                                      3856
//
ID   Mariner-37_LMi repbase;    DNA;    INV; 1522 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1522
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 32-32 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(328..1026,1030..1323)
FT                 /product="Mariner-37_LMi_1p"
FT                 /translation="HDVCLWFVQCREYQQRFPNRRVPDSRVFHGLRERGTL
FT                 PSVNVVSERPVQQTLNEVENILQVVERSPTTSSRRIAAQLGIPQTRVIRTV
FT                 HEQGLYPFHRQSVQHLHEGDAAAQQEFCQWIIANDRLIPRILFTDESTFTR
FT                 NGINNTHNSHVWADENVHATVETNFQRRFSVNVWCGIIDDQLIGPVVLDNR
FT                 LMGHGILIFFKMCYQNTWRISLWQHELVCTFSMTELLHIPYGQHSISTQRI
FT                 LVVGIGRRGVIAWPPRSPDLTPLDYCLWGWLKSEVYKRRVDTREELLARIL
FT                 HACAQVKECRTELRSATQHLSTRAAKCTEVDGGLFEHLL"
XX
SQ   Sequence 1522 BP; 426 A; 349 C; 344 G; 403 T; 0 other;
     cagggtgagt caggaggaaa ggtacatgct ttgaggggtg atactactgg tgattctgaa        60
     caaaaaactt ctaataaaca tatgcccttt tcttaaccgt ttccgggtaa accaatgaaa       120
     acaactagga acgggaaaag tgtagcgtcg tctttactaa ccgtgtcagt acgcagttca       180
     cttgcgcatg gtgcagttgt ttacctcaag tctcagtccg acagtgcttg tcatagtgca       240
     cggtactaca gtgttgttac gtgaacaaag aatacagttt agtgtagtga aaatgccacg       300
     gatcttcaca catgcagagt atgctgacat gatgtttgtc tatggtttgt ccaatgcaga       360
     gaataccaac aacgatttcc gaatcgcaga gtgccagaca gcagggtgtt tcacggattg       420
     cgtgagcgtg gtacgcttcc cagcgtaaat gttgtctctg aacgtcccgt acaacaaact       480
     cttaatgaag ttgagaacat tcttcaagta gtggaacgca gcccaactac tagctctaga       540
     agaattgctg cccaacttgg tattccacaa acacgagtga tacgcacagt acacgagcaa       600
     ggtctgtatc catttcatcg gcagagtgta caacatctgc atgaaggaga tgctgccgcc       660
     cagcaagaat tctgtcagtg gatcattgcc aatgatcgat taattccacg tattctgttc       720
     actgatgagt caacatttac ccgcaacgga atcaacaaca cgcacaactc tcacgtatgg       780
     gcagatgaaa atgtgcacgc tactgtggaa acgaattttc aacgacgctt ctcagtcaac       840
     gtgtggtgcg gtattattga tgaccaactc atcggtccag ttgttttaga taaccgtcta       900
     atgggacacg gtatcttgat tttcttcaaa atgtgttacc agaatacgtg gaggatatcc       960
     ctttggcaac acgagctcgt atgtactttc agcatgacgg agctcctaca cattccgtac      1020
     ggccagtgac acagtatctc aacacaacgt atcctggtcg ttgggatcgg tcgccgtgga      1080
     gtcattgctt ggccaccgag gtcacccgat cttaccccat tggattactg tttgtggggg      1140
     tggctgaaga gcgaagtgta caagcgcaga gtggacacaa gagaggaact tctcgctcgt      1200
     attttacatg cttgtgctca agtaaaggaa tgcagaactg agctccgatc ggcaacacaa      1260
     cacctgtcta caagagcagc aaaatgcact gaagttgacg gtggactgtt tgaacatctt      1320
     ctgtgaggaa acttacacaa ttaaacaaac cataacataa cagtatctta atttactgtc      1380
     acctgcactt ttcccgttcc tagttgtttc cattggttta cccggaaacg gttaagaaaa      1440
     gggcatatgt ttagaagttt tttcttcgaa tcaccagtag tatcaccctc aaagcatgca      1500
     cctttcctcc tgactcaccc tg                                               1522
//
ID   Mariner-37_SIn repbase;    DNA;    INV; 958 BP.
XX
AC   .
XX
DT   26-SEP-2013 (Rel. 19.02, Created)
DT   26-SEP-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-37_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-958
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 402-402 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..901
FT                 /product="Mariner-37_SIn_1p"
FT                 /translation="DEPRSGRPSTSKTDENVQEVKEIVLKNRRITIREIAD
FT                 DLNISFGSCQSILTDVLGMTRVSAKFVPKLLNFDQKQRRMNIAQDMLNDVN
FT                 DDPDLLKRVITGDETWVYGYDVETKAQSSQWKSPGEPRPKKARQVRSNVKV
FT                 LLTVFFDYHGVVHQEFLPQGRTVNKEYYLEVMRRLRESIRKKRPEVWKENS
FT                 WILHHDNAPAHTSLLVSTFLAKNNTIIMPQPPYSPDLAPCDFFLFPKLKRP
FT                 MKGRRFATIEEIKAASLEELKAIPKSAFQKCFDDWKKRWHKCIVSEGDYFE
FT                 GDNIILDE"
XX
SQ   Sequence 958 BP; 303 A; 193 C; 216 G; 246 T; 0 other;
     cgatgaacct cgctctggac gccccagcac gtcaaaaacc gacgaaaatg ttcaggaagt        60
     gaaagaaatt gtgttgaaaa atcgtcgaat cacgattaga gaaatagctg atgatcttaa       120
     catatcgttt ggctcatgcc aatcaatttt aacggatgtt ttgggtatga cacgtgtgtc       180
     agcgaaattc gttccaaaac tgcttaattt tgatcagaag cagcgtcgca tgaacatcgc       240
     ccaagacatg ttgaacgacg tcaatgatga tcctgatctg ctcaaaaggg ttataactgg       300
     tgacgaaaca tgggtatatg gttatgacgt cgaaaccaaa gcccaatcat cccagtggaa       360
     gagcccagga gagccaagac cgaaaaaggc acgccaagtt cgttcgaatg tgaaggtttt       420
     gctcacagtt ttctttgatt accatggcgt tgtgcatcaa gaattcctac cacaaggtcg       480
     tacggtaaac aaggagtatt accttgaggt tatgcggcgt ttgcgtgaat caataagaaa       540
     aaaacgtccg gaagtgtgga aagaaaattc atggattctg caccatgata atgcacctgc       600
     gcacacgtcg ttactagtga gtactttttt ggccaaaaac aatactatca tcatgcctca       660
     gccaccgtat tcaccagact tggccccctg cgactttttc ctcttcccaa aattgaaaag       720
     gcctatgaaa ggacgaagat ttgcgacgat tgaggagatt aaggctgcat cgctggagga       780
     gctcaaggca atacccaaaa gtgcatttca gaaatgtttt gacgactgga aaaagcgctg       840
     gcacaaatgc attgtatcag agggggatta ttttgaaggg gataacataa ttttggatga       900
     ataaatgaat atttttttat aaaaatgaaa agtcacctta ctttttgatc acacctcg         958
//
ID   Mariner-38B_SIn repbase;    DNA;    INV; 2593 BP.
XX
AC   .
XX
DT   20-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-38B_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2593
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 403-403 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. TSD is TA. ~700bp TIR. The sequence
CC   1739-1879 is similar to DNA-9N1_SIn.
XX
SQ   Sequence 2593 BP; 841 A; 460 C; 435 G; 857 T; 0 other;
     caaggaaaca cagggaagtg tccgcctcag attaaaacga gcttttaata tgttgtagta        60
     cagataaaaa taagggacac gtattttttt atacgtgccc atacgcactt taagggggtg       120
     aaacacccct ttgaagaaaa tcggtttttt tctttcgaag cgtataccgt cgaaactata       180
     agagatagaa aaaaatgttt taaataaaag ttgaatggct cgaagagtaa tttataacag       240
     cggaaaaaat ttttttttaa tttttttaat acttttcccc accacttacc tatttttttc       300
     aaaattttta ttttttttat aagcaaaata aagcttattt tattacaaat tcaacggtat       360
     atgataaagt tacgatacaa cattcccatt ttccaaaaat aattaaaaac ctctctatac       420
     gcacggtacg cgcacccgtc cgcgcgtttg tgcgctacgg aagtgactcc ctccgatttc       480
     gacgtgcctt taatatgttg tacagattaa aataagggac acgtattttt ttacacgtgc       540
     cctaaaacac ttttaagggt gaaacacccc tttgaagaaa atcgggtttt ttctttcgaa       600
     gcgtgtatcg tcgaaattat aagagataga gaaaaatgtt ctcaatgaaa gttgaatgca       660
     tgtttttctc gcataagatg acaaaaacat ttcgaggaca gtctgtgtct aacatgaaaa       720
     cgcagacatc aagaaaaaca tttactacaa aataaaacga cactacactg aagaataaca       780
     acaattacgg tgttgtaaga cattaatttc ttgtttagaa aataatatgt aattaatata       840
     agttaaacat ttatttactg gtctacatga ttcgactaga atatttgttc tcttcaacat       900
     tttacagata aggagacttg gattacaaaa aattattact cacacattcc ataccttcac       960
     tatctaacgc cagctcatca actaacaaca agagaactaa catgaaacta attaaaaaat      1020
     tagttagaaa tttcatcttt taaactgcat ttatacaatt caattaatgt gtttattaaa      1080
     ttcaattagt gtagaaatat gcataaccac gctactggcg cgtgcacttt gggtcatttc      1140
     cttacatacg taactcttga atctatacat gtcaatactg ccgagacgta aacattctat      1200
     ttcaagatag gaaattatac tttagagttt aatcttccac gtttcgacac tattgatatg      1260
     tctcggcatt acagattcta tttatatact gatatgtcta gtcgtgaaaa tattttcctc      1320
     gataatgcaa tttcgaggaa actgcacatt tacataacaa ttgaatgtgt tcattatatt      1380
     cgaattgcat tattcatctg agcttcgcct ttgcaagtca gaacctgagg attggaacta      1440
     attatgatta atgcgcgcgc gcgcgcgtgc gtgtgtgtgt gtgtgtgtgt gtgttaattg      1500
     ctattacgtt gtcttttatt taatgcgaca aaaatgtttt agtcaattca gtatatattg      1560
     aattcaattt gtcaagcgaa tgtagaaaaa ttattaaagt caattttctt atcgcgtgca      1620
     ctttgggtca tttcttatct tgaaatagaa tgtttacgtc tcggcagtat tgacatgtat      1680
     aaattcaaga gttacgttaa tgtttttctc gatgtctgcg ttttcatgtt agacacctac      1740
     gagatccgat agcgcacgtt gcaatagccc accaaccaat catcttgact tatctaaccc      1800
     aaccaacgga aaaactctag tcatcgaccg ctgtgagtgg tggtgtgcta tcggtccctt      1860
     gtgctatcgg aatccgcccg ttagacacag actgtcctcg aaatgttttt gtcatcttat      1920
     gcgagaaaaa catgcattca actttcattg agaacatttt tctctatctc ttataatttc      1980
     gacgatacac gcttcgaaag aaaaaacccg attttcttca aaggggtgtt tcacccttaa      2040
     aagtgtttta gggcacgtgt aaaaaaatac gtgtccctta ttttaatctg tacaacatgt      2100
     taaaggcacg tcgaaatcgg agggagtcac ttccgtagcg cacgaacgcg cggacgggtg      2160
     cgcgtaccgt gcgtatagag aggtttttaa ttatttttag aaaatgggaa tgttgtatcg      2220
     taactttatc atataccgtt gaattcgtaa taaaataagc tttattttgc ttataaaaaa      2280
     aataaaaatt ttgaaaaaaa taagtaagtg gtgggggaaa gtaataaaaa gaattaaaaa      2340
     aaattttttt ccgctgttat aaattactct tcgagccatt caactttcat ttaaaacatt      2400
     tttttctatc tcttataatt tcgacggtat acgcttcgaa aaaaaaaaac cgattttctt      2460
     caaaggggtg tttcaccccc ttaaagtgcg tatgggcacg tataaaaaaa tacgtgtccc      2520
     ttatttttat ctgtactaca acatattaaa agctcgtttt aatctgaggc ggacacttcc      2580
     ctgtgtttcc ttg                                                         2593
//
ID   Mariner-38C_SIn repbase;    DNA;    INV; 550 BP.
XX
AC   .
XX
DT   20-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-38C_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-550
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 404-404 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. TSD is unknown.
XX
SQ   Sequence 550 BP; 196 A; 84 C; 81 G; 189 T; 0 other;
     acaaggaacg tttggcaacc cgcatattca aaaaattctg aaactttgtg tacaaataga        60
     ggagttcttc cgtaacacaa aaatattttt tgttcgtgcc cgttttcagt tttagggggt       120
     aaaacaccct tttgaaaaaa atcggttttt tctctttcca agcgaatatc gtcgaaacta       180
     taagagatag aaaaaaatgt tctgaatgaa agttgaatgg ctcgaagagt actttataac       240
     aataattaaa aaattttttt aaattaataa taattaataa taataattaa aaaaattttt       300
     ttaaattatt gttataaagt actcttcgag ccattcaact ttcattcaga acattttttt       360
     ctatctctta tagtttcgac gatattcgct tggaaagaaa aaaaccgatt ttttttcaaa       420
     agggtgtttc accccctaaa actgaaaacg ggcacaaaca aaaaatattt ttgtgttacg       480
     gaagaactcc tctatttgta cacaaagttt cagaattttt tgaatatgcg ggttgccaaa       540
     cgttccttgt                                                              550
//
ID   Mariner-38_HSal repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-38_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1291
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 877-877 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1222
FT                 /product="Mariner-38_HSal_1p"
FT                 /translation="MEISRENFRAMIFYDYKCSLTPKQCIDRLHLAFGDEA
FT                 PSNRTVYNWFAEFQRGRTFLSDEFREGRPSTSVVATNVDAVREMIERDQHV
FT                 TYREIQASLGIDMKAIHTILHDHLNVRKLCSRWIPHNLTEAQKQARVKWCK
FT                 EMLKKFNRGRSNLVYNIVTGDETWIYSYEPESKQQSTVWVFQNEPKPTKVV
FT                 RSRSAAKQMIACFFGYTGHVATVALEDRRTINADWYTTICLPEVINELRRT
FT                 NRNRRIILHHDNASCHSARQTVDFLSSKNVELMTHCPYSPDLSPNDFFLFP
FT                 NIKHKMRGERFVSPEAAVEAFRTLVSEVTASEWKKCFENWFERMQKCIDLK
FT                 GEYFEKQ"
XX
SQ   Sequence 1291 BP; 376 A; 264 C; 273 G; 378 T; 0 other;
     cgtaggctgc tggaaaagtt tctgcaatct agtacttgca gtggcgccac cgttctgcta        60
     ctatcatacc cgtaaaatta gacgtttcta acctataatt cagttgacag tttgtaccta       120
     gtcaactagt tttgtttgca cagtatttta aaagaagtta ttttgtgaga aaatggaaat       180
     ttcgcgtgaa aattttcggg caatgatttt ttacgattac aaatgtagtc taactccgaa       240
     acaatgcatc gatcgacttc atttggcttt tggggatgaa gcaccatcca ataggactgt       300
     ttataattgg tttgccgaat tccagcgtgg acgcaccttt cttagtgacg agtttcgtga       360
     aggtcgtcca tccacgtctg ttgttgccac taatgttgat gctgtgcgtg aaatgattga       420
     gcgagatcag catgtgacat accgcgagat tcaggcatcc ttgggcattg acatgaaagc       480
     aatacacacg attttacatg atcacttgaa cgtacggaaa ctttgcagtc gttggatccc       540
     acacaatttg accgaagctc aaaaacaggc tcgtgtgaaa tggtgcaaag aaatgctcaa       600
     gaaattcaac cgaggtcggt caaatttggt ctacaacatc gttactggag acgaaacgtg       660
     gatctattcg tacgagcccg aaagtaaaca acaatccact gtttgggtgt ttcaaaatga       720
     gccgaaacca acaaaagttg ttcgttcacg cagtgctgcc aagcaaatga ttgcttgctt       780
     cttcggttat accggacatg tggcaaccgt ggctttagag gatcgaagga ctataaatgc       840
     tgattggtat acaacaattt gtttgccaga agtcatcaat gaattgcgta gaacaaaccg       900
     aaatcgtcgc atcattcttc atcatgacaa cgccagctgt cactcagcac gtcaaaccgt       960
     tgatttttta tccagtaaaa atgtcgaatt gatgactcat tgtccgtatt cacctgattt      1020
     atcacctaat gacttcttct tgttcccaaa catcaaacat aagatgcgtg gtgagcgatt      1080
     tgtgtcgcct gaagcagctg ttgaagcatt ccgaacactg gtttctgagg ttacagcctc      1140
     agagtggaaa aaatgcttcg aaaattggtt cgagcgtatg caaaagtgta tcgatcttaa      1200
     aggcgaatac tttgaaaaac aataaagcca tttaccgaat tttacatgtt ttttttcata      1260
     tcgtttgcag aaacttttcc agcagcctac g                                     1291
//
ID   Mariner-38_LMi repbase;    DNA;    INV; 1796 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1796
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 33-33 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(388..1086,1090..1383)
FT                 /product="Mariner-38_LMi_1p"
FT                 /translation="MTAVGLEKMIRKFEKTGSFGVQPGRGRKRIDSTSVEE
FT                 VATAMQEESSGGVQTCSARRIARTLDKPVSTVRKILRNILLCYPFKITHVH
FT                 ELLPVDLPARETFALEFLARMEVDDEWPWKILWTDEAHFHLTGYVNTQNCR
FT                 IWATENPHANQPVPLHPEKVTVWCGFTASFIIGPYFFKRQVLPVLLPVPSL
FT                 VSAMSVFCATTSFQLSNSVDVWMGSFLCKMAHLRTLQIQLSSCSAISEMLG
FT                 LSAAISTAWPSRSPDLNPCDFWLWGYLKDVVFSVPIANLAALKARIAQHIL
FT                 NVTPETLRSVVEHAVSRFQLVAENGGQHIEHVLRQSHGN"
XX
SQ   Sequence 1796 BP; 484 A; 382 C; 416 G; 514 T; 0 other;
     cagggtgatt ataattaaac tttcaaaacg ctgtaaaaat aacaccactg gtcagaatga        60
     cgtcaaattg caacggaata ttatcggaga agggggaaaa cgtatggcag aagaaaaata       120
     aatagtgtga aaattgatca atagatggcg ctgtatgtgt cagaatatgt aaatgaaaac       180
     acctgtcatg cgcacgaccc attgaagttg gtataaacac gccgggtaca cggcttttcc       240
     tcatttcgca tctgagacgt tcgccatgac tgtctcaatg caggatcgcg ctctgcttgt       300
     aaagctgttt tacaagaatg atgactgtgc acaagtcgct ctgcagaagt tccggacact       360
     gaagggtttg aaaaaggcgt tggtccgatg actgccgtgg gtctggagaa aatgattcgg       420
     aaattcgaaa agacgggttc ctttggtgtg caacctggta gagggaggaa acgaattgat       480
     tcgacgtcag tggaagaagt ggccacagca atgcaggagg agtcgagtgg tggtgtgcaa       540
     acgtgtagtg cacggagaat tgcccgaaca ttggacaaac ctgtgagcac ggtgcgtaaa       600
     atcctacgaa acatccttct ttgctatcca ttcaaaatta cccatgtgca cgagttgctt       660
     cctgttgacc tgccagcaag agagactttt gctttagaat ttcttgctcg catggaagtg       720
     gacgatgaat ggccgtggaa gattttgtgg acagacgaag cccacttcca tctgacagga       780
     tatgtcaata cacagaattg tcgaatatgg gcaacagaaa atccacacgc aaatcaacca       840
     gtaccgcttc atcctgaaaa ggtcactgtg tggtgcgggt ttacggcatc atttatcata       900
     gggccatatt tttttaagag acaggtgctt ccggtcctgt tacctgtacc gtcactggta       960
     agcgctatga gtgtcttttg cgcaaccacg tcattccagc tctccaacag cgtggatgtg      1020
     tggatgggat catttttatg caagatggcg cacctccgca cattgcaaat ccagttaagc      1080
     agctgctgaa gcgccatttc ggaaatgcta ggattatcag ccgccatttc tacagcctgg      1140
     ccgtcccgat cacctgatct taatccgtgt gacttctggc tgtggggcta tctgaaagat      1200
     gttgtgttca gtgttccgat tgcgaactta gctgcattga aggcacgcat tgcgcaacac      1260
     attctgaacg tgaccccgga aacacttcga tcagttgtgg aacatgctgt ttctcgattt      1320
     caacttgttg cagaaaacgg tggacagcat attgaacatg ttttgcgcca gtcacatgga      1380
     aattaaaaat ccgatttgat tttgattgat gctttttatg cggtttttgg cctcaggaca      1440
     attaaaaaca cgatttttcc catccgatgt gatatgacct tgccgtggtg gatgggctta      1500
     cgtaactaac agtatcacac ctgtacaccc atgcacactg agtagtacag tttgtttaac      1560
     gtctaactta caccttaggc attgttgtat gattcatttg tcatttgtag tcgaccacta      1620
     ttaaattatg atgcttacag cgccatctat tgatcaattt tcacactatt tatttttctt      1680
     ctgccatacg ttttccccct tctccgataa tattccgttg caatttgacg tcattctgac      1740
     cagtggtgtt atttttacag cgttttgaaa gtttaacttt aattataatc accctg          1796
//
ID   Mariner-38_SIn repbase;    DNA;    INV; 2572 BP.
XX
AC   .
XX
DT   20-APR-2012 (Rel. 19.02, Created)
DT   20-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Solenopsis invicta genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-38_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2572
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 405-405 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus. TSD is TA. ~900bp TIR.
XX
SQ   Sequence 2572 BP; 894 A; 409 C; 390 G; 879 T; 0 other;
     acaaggaaac tcggaagtgt ccgcctcaga tttaaacgag cttttaatat gttgtagtac        60
     agataaaaat aagggacacg tattttttta tacgtgccca atctcatttt agggggtgaa       120
     acaccccttt gaagaaaatc ggttttttct ttcgaagcgt atatcgtcga aactataaga       180
     gatagagaaa aatgttctaa atgaaagttg aatggtcgaa gagtacttta taacagcaaa       240
     aaaaattttt ttttatactt tcccccacca cttacctatt tttttcaaaa tttttatttc       300
     tttttataag caaaataaag cttattttat tacgaattca acggtatatg ataaagttac       360
     gatgcgacat ttccattttc caaaaataat taaaaaccac cccataacgc atggtacgcg       420
     cacccgtccg tgtactatgg aagtgtcccc cttcgatttt gacgagcgtt taatacgttg       480
     tagtacagat caaaataagg gacacgtatt tttttatacg tgccctaatg cacttttagg       540
     ggtaaacacc cctttgaaga aaatcggttt ttttcttgaa gcgtgtatcg tcgaaactat       600
     aagagataga gaaaaatgtt ctaattgaaa gttaaatggc ttgaagagta ctttataaca       660
     gtgataaaaa atttttttat ttttttacac ttttccccac cacttaccta tttttttcaa       720
     aatttttatt tttttataag caaaataaag cttattttat tacaaattca atggtatatg       780
     acaaagttat gatgcgacct ttccattttc caaaaataat taaaaaccac tccataacgc       840
     atggtaccgc ctacccatcc gtgcgttcga tattacttca caataaaacg gatttgtctt       900
     atatggcgtt gactacgcga aagagcattg aagacaaatc aatacaatac aataaatgtt       960
     gaaataagag ttttataata ataataataa tagtaataat aaaataatag tgactttttt      1020
     taaaccgcta aaattagtca aatttttttg ataatatgtc acagtatgta cggaaaacaa      1080
     attatgaata aagaaattat tatttattca taacttgttt ttaattgcaa atatttctct      1140
     tggttacttc aaaataaaat gacaccacac tgaagaataa caacaattac ggtgttgtaa      1200
     gacattaatt ttttgtgtac aaaataataa atataattaa tataagttaa acatttattt      1260
     actggtctac atgattcgac tagaacattt gttctcttca gcattttaca gacaaggaga      1320
     cttggtttac aaaaaattat tactcacaca ttccatacct ttactatcta atgccagctc      1380
     atcaactaac aacaagagaa ctaacataaa actaatttaa aaattagtta gaaatttcac      1440
     cttttatact gcatttatac aattcaattt atgtgtttat tatatacaaa atttgattag      1500
     tgtagaaata tgcataacga cgccacttgg cgcgtgcact ttggatcatc tcttatcttg      1560
     aaatttaatt tttacgtctc ggcagtattg accttaatat gtatacattc aagtgttacg      1620
     taaatgtttt tctcgatgtg tgcgatttta tgatatttac gcagactgtc ctcgaaatgt      1680
     ttttgtcatc tcctattacg gaaaaataga gaaaacatga tgcgtgaagt atcgagcgca      1740
     cgtaccatat gctttggaga ggtttctaat tatttttgga aaatggaaag tcgcaacata      1800
     actttgtcat ataccattga attcgtaata aaataagctt tattttgctt ataaaaagaa      1860
     ataaaaattt gaaaaaaata ggtaagtggt ggggaaaagt ataaaaaatt ttaatttttt      1920
     tatcactgtt ataaagtact cttcaagcca ttcaactttc aatcagaaca tttttctcta      1980
     tctcttatag tttcgacgat acacgcttcg aaagaaaaaa accgattttc ttcaaagggg      2040
     tgtttcaccc ttaaaagtgc attagggcac gtataaaaaa atacgtgtcc cttattttta      2100
     tctgtacaac atattaaagc cgtcgaaatc ggagggagtc acttccgtag caacgcgcgg      2160
     acgggtgcgg taccatgcgt atagagggtt tttaattatt tttggaaaat gggaatgtcg      2220
     catcgtaact ttatcatata ccgttgaatt tgtaataaaa taagctttat tttgcttata      2280
     aaaaaaataa aaattttgaa aaaaataggt aagtggtggg agttaaaaaa attttttgct      2340
     gttataaagt actcttcgag ccattcaact ttcatttaga acatttttct ctatctctta      2400
     tagtttcgac gatatacgct tcgaaagaaa aaaaccgatt ttctcaaagg ggtgtttcac      2460
     ccctaaaagt gaaatgggca cgtataaaaa aatacgtgtc ccttattttt atctgtacta      2520
     caacatatta aaagctcgtt taaatctgag gcggacactt ccggtttcct tg              2572
//
ID   Mariner-39N1_HSal repbase;    DNA;    INV; 486 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19_HSal; Mariner-39N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-486
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 878-878 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. It is buried in Mariner-N19_HSal. It
CC   is a non-autonomous derivative of Mariner-39_HSal.
XX
SQ   Sequence 486 BP; 163 A; 86 C; 94 G; 143 T; 0 other;
     cgtaggcagt ctgaaaagtt ctcgacctga cacatacatg gcattagaaa ctgtcaaact        60
     ataattgtat tggaaagtgg catccctgat ataaacccat gtaaaatttt attcgatctg       120
     tcaagtcatt cgagtagtag caccagttga aaaagctttg tgcaagatgg gtgccgcatt       180
     tgctaacaat tgaccaaaaa cgcattcgaa tgcgtatttc tcaagcgtgt ttggatcgtt       240
     ttaagcaaaa taaaatggat ttcaagcgtc gtttcataac tgttgatgaa acttggatcc       300
     accactatac accagagcga aaagaacctt ccggaatcac actttaatga tggtattgaa       360
     ttattggaaa gacgttggaa taaatgtatt gaagtttcag gagattatat tgaaaaataa       420
     aacatatttc acggcaaaaa aaattttctt tcattgttag gccgagaact tttcagactg       480
     ccctcg                                                                  486
//
ID   Mariner-39_HSal repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-39_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1295
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 879-879 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-39_HSal_1p"
FT                 /translation="MEKIEYRAVIKFFVLDGLTPTEIHPKLLKVYKDASPS
FT                 LSTVKKWAALFKSGRTSLEDDPREGCPKTATTPQNIQQVHDMVLDDRRVKM
FT                 REIAEAIGISKERIGNILHEELHMKKLCARWVPHLLTIDQKRIRMRISQAC
FT                 LDRFKQNKMDFKRRFITVDETWIHHYTPERKEQSKQWIEAGGRAPKKAKTV
FT                 PSAGKVMATVFWDYKGVLLIDYLQKDKTINSEYYCNLLDLLDAKIREKRPA
FT                 LKKKRIVFHQDNARVHTSVLTMAKFNELKYELLEHPAYSPDLAPSDYYLFP
FT                 NLKKFLAGKRFTSNDEAIAAVDGYFADLPESHFNNGIELLEKRWNKCIEVS
FT                 GDYIEK"
XX
SQ   Sequence 1295 BP; 438 A; 223 C; 260 G; 374 T; 0 other;
     cgagggcagt ctgaaaagtt ctcggcctga cacatagatg gcattagaaa ctgtcaaact        60
     ataattgtat tggaaagtgg catccctgat ataaacccat gtaaaatttt atttcgatct       120
     gtcaagtcat tcgagtagta gcaccagttt aatattgacg tgtcattgtc ttttttaaaa       180
     tggaaaaaat tgaatatcgt gcagtgatta aattctttgt tttggatggt ttaacaccaa       240
     cagaaattca tccgaaattg ttaaaagtgt ataaggatgc atcaccttca ctttccactg       300
     tgaaaaaatg ggctgctctt tttaaatctg gtcgtacaag cctcgaagat gatccacgcg       360
     aaggttgtcc aaaaactgct acaacaccac aaaacattca acaagtccat gatatggtgt       420
     tagatgatcg gcgagtgaaa atgcgtgaaa tagctgaggc cataggcatc tcaaaagaac       480
     gaattggaaa tattttgcat gaagaattac atatgaaaaa gctttgtgca agatgggtgc       540
     cgcatttgct aacaattgac caaaaacgca ttcgaatgcg tatttctcaa gcgtgtttgg       600
     atcgttttaa gcaaaataaa atggatttca agcgtcgttt cataactgtt gatgaaactt       660
     ggatccacca ctatacacca gagcgaaaag aacagtcgaa acaatggatt gaagccggtg       720
     gacgtgcacc aaagaaggca aagacggttc catcagcagg aaaggttatg gcaacagttt       780
     tttgggatta caaaggtgtt ttgttgatcg attatcttca gaaagataaa acgattaact       840
     ctgaatatta ttgtaacctt ttggatctat tggatgcaaa aattcgtgag aaaagacctg       900
     ctttaaagaa gaaaagaatc gttttccatc aagacaatgc acgtgttcac acaagtgttt       960
     tgacaatggc aaaattcaac gaattaaagt acgaattgct tgaacatcca gcgtattcac      1020
     cagatttggc tccctctgac tattatctgt ttccaaacct gaaaaaattc ctggctggaa      1080
     agcgttttac atcaaatgac gaagctattg cagccgtgga tggatatttt gcagaccttc      1140
     cggaatcaca ctttaataat ggtattgaat tattggaaaa acgttggaat aaatgtattg      1200
     aagtttcagg agattatatt gaaaaataaa acatatttca cggcaaaaaa aattttcttt      1260
     cattgttagg ccgagaactt ttcagactgc ctacg                                 1295
//
ID   Mariner-3N1_ACe repbase;    DNA;    INV; 561 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-3N1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-561
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 510-510 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 561 BP; 179 A; 105 C; 106 G; 171 T; 0 other;
     cagggtgggc catctagcgt ttggaatttc aactaccggt tattttgagt ttgaaaggcg        60
     taataacatt tatgacgtat cagaaattta gttttttgtt tgacatttac gaaatgggtc       120
     gctatacgct tgaacaaaat tgggaaatat tgaaaactta cttccaaagt ggtgagtctt       180
     caacccaaac tgtaagaaat ttacgtggaa aatttggtag aaaagaaatg ccttcaacgc       240
     agtttgtgga tcaatttgtg aagcgaattc ggcaaactgg atccttattg gataaagcaa       300
     ctcgttcacg tgctcgtcca gtaaggtcaa ccgaaaacat tgctgctgtt gctcagagtg       360
     tgcttgaaca accatcaaca tcaactcgcc atcgttctca aaacttgaac atttcacgca       420
     cttctttgag aagaattttg aataaagacc tcggtaaatg gcaatgtact acctttccaa       480
     taaagccata aactttgaaa aatattcatg cgtttttttt tagagccaaa ttaaattcca       540
     aattttaaat ggcccaccct g                                                 561
//
ID   Mariner-3_AAe repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   20-FEB-2012 (Rel. 17.12, Created)
DT   20-FEB-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   Mariner/Tc1 DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1589
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2469-2469 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Possibly active.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..1335
FT                 /product="Mariner-3_AAe_1p"
FT                 /translation="MRAESFAIRAQCCLLTVFKMPKGKFLDETERRLILEL
FT                 KDVGQSNRAIAKRIGRGETVVRNFLKKGENYGIRKKNKGNSKITNRERNRI
FT                 IQLGEAGELDSSGIKKELGLSITTRRVSQILRGSGHMVYTKKAKKPNLTPR
FT                 HVQARLDFARNHMSWKREWNNVIFSDEKKFNLDGPDCCAYYWHDLRKDPQV
FT                 KLSRNFGGGSLMVWAAFSRRGKTPIATITTRMKSENYVELLDSVLIPFTED
FT                 VMENEFVFQQDNAAIHVSKASKQWFLERDIPVMDWPARSPDLNPIENLWGI
FT                 LARRVYSGGRQFGSVRELEAAVREEWRKIPLTMLQNLVDSMPKRIYETILK
FT                 NGKQTKY"
XX
SQ   Sequence 1589 BP; 486 A; 295 C; 373 G; 435 T; 0 other;
     tacagtggcc gaaattccta taagcgcaca cgcatttttc aacatttgcg actagttatt        60
     acataaaaca ttgacgatct gttactaaaa tgatatttac tatatttcca cttggttgta       120
     tgaaagacag tcaaaattaa taatttttcg attttgtgaa ataaaaatat cattttttgg       180
     ccaggaaatt cctataagcg cacagtgtcc aagctaacgc catttgtgtt tgcttcactc       240
     acactacaaa aacttgtcat tttcttttgc tgccgatgta aacggatgcg tgcggaaagt       300
     tttgcgattc gtgcacagtg ttgtttgttg acagttttca agatgccgaa aggaaagttc       360
     ttggacgaaa cggagcgaag attaatcctt gaattgaagg atgttggcca aagtaaccgt       420
     gcaatcgcca agaggatcgg tagaggagag acggtcgtgc gaaatttcct gaagaaaggt       480
     gagaattacg gcatccggaa gaaaaacaag ggcaactcca agatcaccaa ccgtgagagg       540
     aaccgaatta tccagcttgg tgaagccggg gagctggatt catccggtat taagaaggaa       600
     ttgggtcttt ccatcacaac aaggcgagta tctcaaatac tacgtggatc tggacacatg       660
     gtgtacacga aaaaggccaa aaaacccaac cttactccga ggcatgttca ggcaagactg       720
     gattttgcca gaaaccatat gtcttggaag cgggaatgga acaacgtgat tttttccgac       780
     gagaagaagt ttaatcttga tggtcctgac tgctgcgcgt attattggca cgatcttcgg       840
     aaggatccgc aagtgaagct gagcagaaat ttcggtggag gaagtttgat ggtctgggct       900
     gcattttcac gtagaggtaa aaccccgatt gcaacaatta ctaccagaat gaagtccgaa       960
     aactatgttg agcttctgga cagtgttttg atcccattta cggaggatgt gatggaaaac      1020
     gaatttgttt ttcaacaaga taacgctgcg atccatgtca gcaaggcctc caaacaatgg      1080
     tttttggagc gggacatccc agttatggat tggccagcgc ggagtccgga cctaaaccca      1140
     atcgaaaatc tttggggaat cctcgcaaga cgggtttaca gtggaggacg gcagttcgga      1200
     tcagttcgag agctggaagc agctgttaga gaggagtggc gtaaaattcc tttgacaatg      1260
     ctgcagaacc tcgtcgattc aatgccgaaa cgaatttatg aaacaattct gaaaaatggt      1320
     aaacaaacca agtactaaag ttgttgtgtt cttgtgatat gattttttat gatctgaaaa      1380
     taaaggtgcg cttataagaa tttccatact caaatcccgt tttttcctct tcattccaaa      1440
     ctgtttgaaa gaaaagtctt agtagttggt agaaatatca tattatccga atacctaaaa      1500
     gcagagatga tttattgaag tattggactt tcatactaca tgtgccggtg aaaaatggtc      1560
     atgcgcttat aggaatttcg ggcactgta                                        1589
//
ID   Mariner-3_ACe repbase;    DNA;    INV; 1302 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1302
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 511-511 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           72..1196
FT                 /product="Mariner-3_ACe_1p"
FT                 /translation="MTYQKFSFLFDIYEMGRYTLEQNWEILKTYFQSGESS
FT                 TQTVRNLRGKFGRKEMPSTQFVDQFVKRIRQTGSLLDKATRSRARPVRSTE
FT                 NIAAVAQSVLEQPSTSTRHRSQNLNISRTSLRRILNKDLGMKPYKVQLVQE
FT                 LKPHDHPMRFRFAQWAEQRLVEDEHFYRKIIFSDEAHFHLGGYVNKQNCRI
FT                 WGSENPHVVMEKPMHPQRVTVWCGFWSGGIIGPFFFENEQGAAVTVNGERY
FT                 RAMLNEFLLPKFEEEDTDDIWFQQDGAPCHTANATIDLLRTVFENRIISRN
FT                 ADVNWPPRSCDLTPLDYFLWGTVKDECYANQPETIQELKHEIKVAIDEIRA
FT                 HTVENVLKNWVDRMGYCAASRGSHLNEIVFHV"
XX
SQ   Sequence 1302 BP; 382 A; 267 C; 289 G; 364 T; 0 other;
     cagggtgggc catctagcgt ttggaatttc aactaccggt tattttgagt ttgaaaggcg        60
     taataacatt tatgacgtat cagaaattta gttttttgtt tgacatttac gaaatgggtc       120
     gctatacgct tgaacaaaat tgggaaatat tgaaaactta cttccaaagt ggtgagtctt       180
     caacccaaac tgtaagaaat ttacgtggaa aatttggtag aaaagaaatg ccttcaacgc       240
     agtttgtgga tcaatttgtg aagcgaattc ggcaaactgg atccttattg gataaagcaa       300
     ctcgttcacg tgctcgtcca gtaaggtcaa ccgaaaacat tgctgctgtt gctcagagtg       360
     tgcttgaaca accatcaaca tcaactcgcc atcgttctca aaacttgaac atttcacgca       420
     cttctttgag aagaattttg aataaagacc tcggtatgaa gccgtacaaa gttcaattag       480
     tgcaagaatt gaagccgcat gaccatccga tgcgttttcg gttcgcccaa tgggctgaac       540
     aacgcttggt tgaagatgag catttttacc gaaaaatcat cttttctgac gaagctcatt       600
     ttcacctcgg tggctatgtg aacaagcaga attgtcgtat ttgggggtca gagaatccgc       660
     acgtcgtcat ggagaagccg atgcatccac aacgagtgac tgtttggtgt ggtttttggt       720
     ccggcggcat cattgggcca tttttcttcg aaaatgagca aggagctgcc gtcactgtca       780
     atggcgagcg ctaccgcgcc atgctaaacg aattcttgct tcccaaattt gaagaggagg       840
     acacagacga catttggttt caacaggacg gcgcaccttg ccacacagcc aacgctacaa       900
     tcgatctttt gcgcactgtc ttcgaaaatc gcataatcag ccgaaatgct gatgtcaatt       960
     ggccgcctcg cagctgcgat ttgactccgc tggactattt tttatgggga accgtcaagg      1020
     atgagtgtta cgctaaccag ccagaaacga ttcaagaatt aaaacatgaa atcaaagttg      1080
     ccatcgatga aatacgcgcc catacagtgg aaaatgtact gaaaaattgg gttgatagaa      1140
     tggggtattg tgcagccagc cgtggaagtc atttgaatga aattgtattt catgtttaat      1200
     ggcaatgtac tacctttcca ataaagccat aaactttgaa aaatattcat gcgttttttt      1260
     ttagagccaa attaaattcc aaattttaaa tggcccaccc tg                         1302
//
ID   Mariner-3_AEc repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 545-545 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-3_AEc_1p"
FT                 /translation="MSKFVPNKEHSRTALIFCFHLKKTAAESYRLLREAYG
FT                 EHAPSQDTCERWFRRFKSGDFDVADKEHGKPSKRYEDVELQALLDEDDSQT
FT                 QKQLAEQLSVSQQAVSNRLREMGKIQKVGRWIPHELNERQMERRKNTCEIL
FT                 LERYKRKSFLHRIVTGDEKWIYFENPKRKKSWVDPGAPSTSTARPNRFGRK
FT                 TMLCVWWDQKGVVYYELLKPAETVNTKRYKQQLIDLNRSLLEKRPEYRKRQ
FT                 HKIIFLHDNAPSHTAKPVRDTLEALSWEVLAHAAYSPDLAPSDYHLFASMG
FT                 HALAEQRFGSYEDVKKWLDEWFAAKGEDFYWRGIHKLPERWEKCVTSNGAY
FT                 FE"
XX
SQ   Sequence 1292 BP; 408 A; 250 C; 303 G; 331 T; 0 other;
     taccaggtgt acaagtatga agtgcggatt tgagacaaca gatggtgcac caatgcagtg        60
     tgtagtataa agatttgacg tatatgccat tttgttgtgc catcaacaag tgtcaaacgc       120
     gcataagtga taaattgaaa aagtgtttgc atagtattgt tttgctgtgt tcaatatgtc       180
     gaaatttgtg ccaaataaag agcattcgcg gacagcatta attttttgtt ttcatttgaa       240
     gaaaactgct gctgaatcat accgattact tcgagaagct tatggtgaac atgctccatc       300
     gcaagatacg tgtgaacgat ggtttcggcg tttcaaaagt ggtgatttcg atgttgcaga       360
     caaggaacac ggaaaaccgt caaaaaggta cgaagatgta gaattgcaag cattgttgga       420
     cgaagacgat tcacaaacac aaaaacaact cgcagagcaa ttaagcgtta gtcaacaagc       480
     tgtttccaat cgcctacgag agatgggaaa gattcagaag gtcggcagat ggataccaca       540
     tgagttgaac gagaggcaga tggagaggcg caaaaacaca tgtgaaattt tgctcgaacg       600
     atacaaaaga aagtcgttct tgcatcgtat cgttactggg gatgaaaagt ggatatattt       660
     tgagaatccc aagcgcaaaa aatcatgggt agacccaggc gcaccatcca catcgaccgc       720
     aagaccgaat cgctttggca ggaagacgat gctctgtgtt tggtgggacc agaagggtgt       780
     ggtctattat gagctgttaa agcctgctga aacggttaat accaaacgct acaaacaaca       840
     attgatcgat ttgaaccgtt cgctactcga aaaacgacca gaatatcgaa aaaggcaaca       900
     caagatcatt tttctccatg acaatgctcc atcacatacg gcaaaaccgg ttcgcgacac       960
     gttggaagca ctcagctggg aagtgctagc ccatgcggct tactcaccag acttggctcc      1020
     ttccgattac cacttgtttg catcgatggg tcacgcactt gctgagcagc gctttggttc      1080
     gtacgaagat gtgaaaaaat ggctcgatga atggttcgcg gcaaaagggg aagattttta      1140
     ctggcgtggt atccacaaat tacccgaaag atgggaaaaa tgtgtaacta gcaatggagc      1200
     atactttgaa taaaccactt tttatcattc ttccgaattt aacgtgtttt tttttgaaaa      1260
     aaaatccgca tttcatactt gtacacctgg ta                                    1292
//
ID   Mariner-3_AG repbase;    DNA;    INV; 3685 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Anopheles
DE   gambilae.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3685
RA   Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 16(7), 1394-1394 (2016).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           383..1393
FT                 /product="Mariner-3_AG_1p"
FT                 /translation="MPLRKKISLEDKQKIVKLYHEEYRMTDIARIMDLNIQ
FT                 TVSRIVHNFLKEGEITNHSSQKGGPHNKKLTAEQLEMIKSWVDEDCTTSLK
FT                 KISEKCAREFGVNVCISTIRNYLSEFHYTLKRVQLLPVRRNAGDNVQMRKE
FT                 YASRFLDLQSDLNDHNFMFVDEVGFNISLRCKRGWSVSGKPATQVVPSIRS
FT                 RNLTICCCMSRNGIIAYDSTNGAFNQNLFLGFLEKLKESMATNNITDPVIF
FT                 LDNVAFHKTNLVKQFAEENNIRLEFLPPYSPFLNPIENMFSKWKDIVRRAR
FT                 PTNEAELMKAIRDGSELINRQDCDGYFRNMLKYIRKCINEEEIVD"
XX
SQ   Sequence 3685 BP; 1177 A; 703 C; 751 G; 1054 T; 0 other;
     tacagggttt cgaatcatat aagggaatag ttcaatcagt taggggaatg ttgcaaaccg        60
     gtaggggagt gttgcaagca cactgtggaa acttgcaatc atataaggga atttttcaag       120
     cagttagggg agagttgcaa tgtcattggg gagttttgca atccgtaggg gaatttttat       180
     ccgggcttca atccaaccct gcaaatgtca agtgtcagaa gatcgtttgt ttacattgcg       240
     tcgatgccgg ctcataaaca ttctatcagg cgaaggaaaa ggtaactaat tgcaataatt       300
     ttatcaaatt acccggttta atgtgccttt ttctttcagg caaaggactg ttgctaattt       360
     tactagaaat aatcaatcaa agatgccgtt aagaaaaaag atttcactgg aggacaaaca       420
     aaaaattgtt aaattgtatc atgaggaata cagaatgaca gacattgcta ggataatgga       480
     tctgaacatc caaacagttt ctcgaattgt tcataacttt ttaaaagaag gtgagattac       540
     gaaccattcg agccaaaaag gaggtccaca taacaaaaaa ctcactgcgg agcaattgga       600
     aatgataaaa tcgtgggtgg acgaagactg cacaacaagt ctcaaaaaga tttccgaaaa       660
     gtgtgcccgt gaatttgggg ttaatgtctg catatcaact ataaggaatt atttaagcga       720
     attccattac actttaaaaa gagtgcaact attgccagtg cgacgcaatg ctggagataa       780
     tgttcagatg cggaaggaat atgcgtcgcg ttttttggat ttgcagtcag atttaaatga       840
     ccacaacttc atgtttgtgg atgaagttgg atttaatatc tcattacgat gcaaaagagg       900
     gtggtcggtt tccggtaaac ctgcaacgca agtcgtgcca tctatcagaa gccgaaattt       960
     gaccatttgt tgttgcatgt cccgaaatgg gatcattgcc tatgactcca cgaacggggc      1020
     attcaaccaa aatctttttc taggttttct agaaaaactc aaggaaagca tggcaactaa      1080
     taatatcact gatccagtga tatttttaga caatgttgct ttccataaaa caaacttagt      1140
     taaacaattt gcagaagaga ataatataag attagagttc cttcctccgt attcaccctt      1200
     cctcaatcct atagaaaata tgttttctaa gtggaaggat atagtacgaa gagctcgccc      1260
     aacaaacgaa gctgaactaa tgaaagcaat acgagatggc agtgagctga taaatagaca      1320
     agattgcgat ggatattttc gaaatatgct taagtacatt cgcaaatgca tcaatgagga      1380
     ggaaattgtt gattgacatg ttgctgttgg tgttattaat acgaatgatt gaatttttag      1440
     ttcctgttac ataagatatt aggattaaga atttaagcta acaagagctg tgattgaact      1500
     attttagact ttctgaattc ttatgtaatt ttattcaaaa tcaaaaccaa acgaaaaatg      1560
     ctgtgaatta aactctaatg aaataaacaa tttttactga attgtcctct gttgaattgt      1620
     gttccacagt agaaaagccc attactaaaa catttattga gatatgacat acacatgcat      1680
     gaagcgggcg tcagcagcat cgcaaatatg ttctgtagga ctacagctct attgacaccg      1740
     ttggtccaac tgcaaccgtt agacgcttct gtgacagcta ttgtgcataa atgcctaccg      1800
     tctggtcagg ttcaatagcg aacgcgtaat gacctgccgg cagattttaa gtgtaaaatg      1860
     gtaatacacg ttttaaaact ttcatcgttg tctctaatag gtttatagta tcgttggcta      1920
     tacagcgttt ctcaagttag ctcaacatcg taacactatt tttctaacac gttaaacgat      1980
     tctcaaaatc gtacatacaa ttcatatcca taaactcttt tcaattttgt aacattaggt      2040
     ttcggaaccg taaaatctca actcgaatct gtaaaatgta taatgggaag atgggtacta      2100
     tttttttcct atcgaagagg aaggtgacaa ggagtcagct acgtgccctg ccgtctatag      2160
     aaccctatac tacaatggct cctgataaga ttctaatgcc aactccaacg ccaactgcca      2220
     actaatcagc aaagaataaa agagcgatcg agggttcgat cggggccata cttcgcttaa      2280
     ctttccgtgt tcacttttct tcgacttaaa agttcctgtg ctcgaaagaa tttctgcccg      2340
     ctacacaaca aaatacatat acactagctt tcatcatcat tagccacggt tgataaaata      2400
     acactaatca tcagttatct caatttataa gtaactaatt actacaagtg ataaccttct      2460
     ctaaactgta aaatatgcac cttactgcta tctgctatat ggacaacggc ttcatcgact      2520
     gctgagatcc agaagtcttc gaggctgcac gaaatgttag atatatcata tattgattcg      2580
     cccggtggtc ctctatggac aggagtcttg gaccatccta gcggaggatg caaacactct      2640
     attcgtgttt gagcgacgca tcctcctggt catctttagc ggtgtgttcg agcatgtagc      2700
     gtcgagaaga aggatgaacc tcaagcttgc cgatgctgac ggtggcgaag gctggcagga      2760
     tacgatggct gaggcatgtc atgaggatgc cggattcggt atgaggcaca gcggagcaca      2820
     gcaaactcga tggctggatc atgtgaagcg agatcgggtg tctacatggt cggagatcgg      2880
     gtgcctacat ggaacttgaa gtgtagcgct agaataaata tgttatgtaa ttttaatatt      2940
     ctgagttatc ttaaatcatt acatgttgaa taattactca tattactatg acaccgtcgc      3000
     gtagttggtg caaagaagag gtgctgatct gcgtaaaaaa cttggagatc ctaatgtgtt      3060
     ccaagcattt gatgcagttc ggatgcaaac gaagaagaaa gggcatagcc ttggaccgac      3120
     cgtactggaa aaacataaca tatgtatgta taaactgagt atatcgacac gactaatgtg      3180
     acataccaca ccaagaagga aaaatttccg gcattaacga agaatgtcta gatgttttac      3240
     atctggcaga gggcacgcta atagctgcta tctatgtaga taaattacac gtacatagta      3300
     aaccacacgt ttccactatt aacatatagc ttcaatgaac ctttgcctga aagaaaaagg      3360
     cacattaaac cgggtaattt gataaaatta ttgcaattag ttaccttttc cttcgcctga      3420
     tagaatgttt atgagccggc atcgacgcaa tgtaaacaaa cgatcttctg acacttgaca      3480
     tttgcagggt tggattgaag cccggataaa aattccccta cggattgcaa aactccccaa      3540
     tgacattgca actctcccct aactgcttga aaaattccct tatatgattg caagtttcca      3600
     cagtgtgctt gcaacactcc cctaccggtt tgcaacattc ccctaactga ttgaactatt      3660
     cccttatatg attcgaaacc ctgta                                            3685
//
ID   Mariner-3_AP repbase;    DNA;    INV; 2939 BP.
XX
AC   Contig54199;
XX
DT   07-MAR-2008 (Rel. 13.03, Created)
DT   17-MAR-2008 (Rel. 15.12, Last updated, Version 2)
XX
DE   Mariner-type transposable element.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_AP.
XX
NM   Mariner-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2939
RA   Jurka J.;
RT   "Mariner families from Acyrthosiphon pisum.";
RL   Repbase Reports 8(3), 342-342 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(358..537,585..1205,1209..1625)
FT                 /product="Mariner-3_AP_1p"
FT                 /translation="MDQESSNISPMKKNARGNVRIILTIIIVLFRTVLMYY
FT                 SVLYYTTITTIFNSSLLVLVKNGDVPKLTAKEMIKKISEESGIGQRTVSVT
FT                 LSEYRNKKTVTSPNKTKIRPKVTDKVDEFDQNAIRQKVHQFWHNHQIPTLN
FT                 KILTAVNEDDSLPSFSKISLHRVLKHLNFEYVRKSRNSVLIERNDIVCWRR
FT                 NYLETIKNYRQLGRQIYYLDETWVNAGETTSKSWVDITVKSTRDAFLRGLT
FT                 TGQKEPSGKGKRLIVVHIGSSDGFVPGLFCFESKKNTQDYHDEMNGDNFYE
FT                 WFNKILPLLNENAVIVMDNASDHSVKKDPCPVISWKKADIINWLENKGEVV
FT                 DHIKIKSQLLERAQVLKPQYEQYVIDELAKAANKTVVRLPPYHCELNPIEL
FT                 VWSSVKKLCSHE"
XX
SQ   Sequence 2939 BP; 968 A; 466 C; 548 G; 957 T; 0 other;
     ctccgtacca cgagagaacg catacggcgg ccgacgaaaa ctggtttatt tcgcgcattt        60
     cccctctacg aaacagtttc tcagccggaa taagtcggtt gctatcggaa ctataactat       120
     agtcggtttt cggttaggtc atggtataca gaatggttgc tgagcagctg acaattgttg       180
     attcacgcgt cgtgtacact actgttttga gtttttttta ccgagtgaat cttgttttag       240
     tttgactgtg ccgtaaattg tattatattt tttttgcggc agtgtttgcg ttactacgtg       300
     tgcgtatatc attttatttt gactgtcagg tgtatacctt attttttttt tattcaaatg       360
     gatcaagaaa gcagcaatat ttcaccaatg aaaaaaaatg ctcgtggaaa tgtaagaatt       420
     attttaacta ttataattgt attatttcgg actgtactta tgtactatag tgtgttatat       480
     tatactacaa taaccactat ttttaattct agtttgttgg ttctggtcaa aaatggatga       540
     ttgtaaattt gtacaaaaac aaaatggcac tgcaagcaac ttgagatgtg ccaaaattga       600
     ctgcgaagga aatgataaaa aaaatatcgg aagaaagtgg tatcggacaa cggactgtga       660
     gcgttactct gtcggaatat cgcaacaaaa agactgtaac atcaccaaac aagaccaaaa       720
     tcagaccaaa agtaaccgat aaagtagacg agtttgacca aaatgccatc aggcaaaaag       780
     ttcatcaatt ttggcacaac catcaaattc cgacgttgaa taaaatatta acagcagtca       840
     atgaagatga cagtttgcca agtttctcaa aaatttcttt gcacagagtt ttgaaacatc       900
     tgaatttcga gtatgtccgt aagtctcgta atagtgtatt aatcgaacgg aatgatattg       960
     tgtgttggcg ccgaaactat ttggaaacta taaagaatta tcgtcagtta ggtagacaaa      1020
     tatattacct tgatgaaaca tgggtaaatg caggtgaaac tacatcgaaa tcatgggtgg      1080
     atattacagt gaaatcgaca agggacgcat ttctcagagg tcttacaact ggacaaaagg      1140
     aaccatctgg taagggcaag cggctcattg ttgtgcacat cgggtcatct gacgggtttg      1200
     ttccttgagg tctattttgt ttcgaatcga aaaaaaatac ccaagattac catgacgaaa      1260
     tgaacggtga taatttttat gagtggttca acaaaatttt gccgttattg aacgaaaatg      1320
     ccgtgatcgt catggacaat gcgtctgatc attcggtaaa gaaggaccca tgccccgtta      1380
     tatcttggaa aaaagcagat attatcaact ggctggaaaa taaaggtgag gtagtcgatc      1440
     atataaagat taaatcccaa ttattggaaa gagctcaagt tttaaagcct caatatgaac      1500
     aatatgtgat tgatgaatta gcaaaggctg ctaacaaaac tgttgtacgt cttccccctt      1560
     atcactgcga attaaaccct atagaactcg tgtggtcatc agtaaaaaaa ttatgttcgc      1620
     atgaataata caacatataa attgcaagat gttcgtaaac tattggaaga aggcgtggaa      1680
     cgggttacac cagacatgtg gaaaaacttt attactcatg tgacaaaaga ggaagacaaa      1740
     ttttggcaaa tcgatgtctt atctgatgaa ctctttgatg aacaagaatt ccacgtctta      1800
     acaatcacag gtgacacaag ttcagacttc gattctgatt aaattattta ccaataaatg      1860
     tttgtatatt atttttaaat atgactatgg ttttttaata ttagtgtatt atttgtattt      1920
     ttattttttg tacatattgt ttttaaatca atcgtaagat ttagtacatt tttaatttat      1980
     gattttttgt atgactgtat tatttgtatt tttaatttaa tgacttatga aaaaaatata      2040
     ataaatgtaa tatgattata taaccaaaaa aaaattggtt tattgatctt ataacaatat      2100
     taaataatat taagtgatac atcaactaat acgcgtgaat ccgtgattat acaagcacgt      2160
     aatatattaa tcacttgagc cgctgtataa gctcgtgtga agtgggaatg ttacgtattg      2220
     ccgtatgcgt tctcttgtga tacggtgggg gaaatgtgcc ctcgaaacga cggagcgcaa      2280
     tcattcggat gcgcgagccg tatgaaggga tggcaaaaat tttccagacc tcgatatatc      2340
     ggttatcgat aaatcgatac accgatatat cggatcagaa aatatcgata tatcgcgttt      2400
     tttggatttt gaattttgag ttttttttta attactagat agcgtgtttt gacctactct      2460
     cgctctcact tgtgccggcg tggttactgg ttaaatgata actatataaa ggctttccat      2520
     acttattact atcagtgcgt agtattccct gtccctcttg atttcgggtc atgtttatac      2580
     actggatagt gttgtagtct gtgaggctac atcaatcaca acggaattaa ttttttctta      2640
     ctcaatttta ttgaataaat taccaatttt taaatgtttt tacttaacat cttagcataa      2700
     tatatgccat agtataatat aatataatgt ccacaaaaaa catccattca gaaaaattat      2760
     ttaagaagaa acgcaaatac gttcatggaa aaaattcatg gtagtaaaaa tatcgatatc      2820
     cgtcaataat tatcgatatc acaaatatat cgaaactaaa atatcgatat ttttacaaga      2880
     aatatcgata tattttttgc catccatacg gcccgtatgc gttctctcgt ggtacggag       2939
//
ID   Mariner-3_BM repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   26-APR-2010 (Rel. 15.07, Created)
DT   26-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1280
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 938-938 (2010).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. The protein is coded by 2
CC   overlapping ORFs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(189..542,509..1204)
FT                 /product="Mariner-3_BM_1p"
FT                 /translation="MDTSKIRVIFEYEFRRGTNAAETARNINVAFGEGTAN
FT                 ERTVRFWFKRFRDGNFDLKNEPRGRPPTHVNNNELKEMVEADPSQTTQELA
FT                 AWFNVTLPTILTHLRQINKIKNMKNGCLMINKKYEKWVPHDLTDLQKETRV
FT                 ETCVALLNRYRNEGILDRIVTCDEKWILYDNRKRKMQWLTPGQTPQQCPKA
FT                 KLTNKKVMVTVWWSQHGVIHYSFLRSGQAITADVYCAELRTMIAKLAVKQP
FT                 RLMNRSSPLLLHDNARPHTARETVLTLQELQLETIRHPPYSPDLAPTDYHF
FT                 FRDLDNFLRDKKFSSQEAVQNAFTQFVESRSPEFYRKGINDLPIRWQQCID
FT                 NNGRYFD"
XX
SQ   Sequence 1280 BP; 416 A; 240 C; 256 G; 368 T; 0 other;
     ggggttaaag tatgaaattg ccgttttatt gtaataggta cttcgaattg acatagaacc        60
     ttcatggttt gagatttttg agtgaaactt ttttcaaatg gtacctatga ggttcttctt       120
     ttaaaaaatg tgcaacattc gattatcgac tttcagttgt ttttttttat tcagcttaga       180
     caagaaagat ggatacttcg aaaattcgag tgatttttga atacgagttc cgacgcggaa       240
     ctaacgctgc agaaacagct cgcaatatca atgttgcgtt tggagagggg actgctaatg       300
     aacgcaccgt gcgattttgg tttaaacgct ttcgtgatgg aaattttgat ttgaagaacg       360
     aaccacgtgg aagaccgccc acacatgtga ataacaatga attgaaagag atggtggaag       420
     ccgatccgag ccaaactacc caggaattag cggcatggtt taacgttacc ttaccaacaa       480
     tattgactca tttgcgtcaa atcaataaaa taaaaaatat gaaaaatggg tgcctcatga       540
     tttgactgat ctgcagaaag aaacgcgtgt tgaaacttgt gttgccttgt tgaatcgata       600
     cagaaatgaa ggaatattgg atcgaattgt gacatgtgat gaaaagtgga ttctttacga       660
     taaccgtaag cgaaaaatgc aatggctgac cccaggtcaa acgccgcaac agtgtcctaa       720
     agcaaagctt accaataaaa aggtaatggt aactgtttgg tggtctcagc atggtgttat       780
     tcactatagc tttctccgat ctggtcaagc aataacggca gatgtctact gtgccgaact       840
     ccgaacaatg atagcaaaac ttgcagtgaa acagccccga ctcatgaatc gatcttcacc       900
     attattgctc catgataacg cgagacctca tacagcacga gaaaccgttt taactctaca       960
     ggaactgcaa ttagaaacca ttcgtcaccc tccgtattcg ccagaccttg ctccaacgga      1020
     ctaccatttt tttcgtgatt tggacaattt tctacgtgat aaaaagtttt cttcccagga      1080
     ggcagtacaa aatgctttca cacagtttgt agaatctaga tcaccagagt tctatcgcaa      1140
     aggcataaat gaccttccta ttagatggca gcaatgtata gataataatg gtagatattt      1200
     tgattaaata aatatgttaa atgaaaaaaa aaaaaatttc aatttttcag tacaaatcgg      1260
     caatttcata ctttaacccc                                                  1280
//
ID   Mariner-3_CFl repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.04, Created)
DT   09-JAN-2012 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1299
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 827-827 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Probably still active.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1229
FT                 /product="Mariner-3_CFl_1p"
FT                 /translation="MDKIEYRAVIKYFVLKGLTATEIKNELDSTLGDSSPS
FT                 FSTVKKWAAEFKRGRSSIFDDERSGRPKTATNEEIIQKIHDSVLNDRRVKV
FT                 RELSNIANISIDRVHNILHEHLHMRKLSARWVPRLLTVDQKRIRTNISQEC
FT                 LDLFKRNSTEFLRRFITVDETWIHHYTPETKQQSKQWVEAGGSAPKKAKTV
FT                 PSAGKVMATVFWDSQGVVFIDYLEKGKTINGEYYAALLEQLNDAIKTKRPH
FT                 LAKKKVLFHHDNAPAHTSSIAVAKLHELRFELLPHAPYSPDLAPSDFFLFP
FT                 NMKKWLAGKKFTSNAEVIAETDAYFGGLSKSYYTEGIKKLEHRWSKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1299 BP; 415 A; 254 C; 278 G; 352 T; 0 other;
     tacgagggta gttcgaaaag ttctcggcct aatatagaga tgtcgctaag aatatcaaat        60
     ggctatgatt tttctcaagt ttaatccctc agagggcgta ccgcacagtt tcagacagat       120
     tcgttcgcta gtttgtttac tgtgctcgag taaaacagac aagatttgat acttctccaa       180
     aaatggataa aattgaatat cgcgcagtca taaaatattt cgttttaaaa ggattaacgg       240
     caacagaaat aaaaaacgag ctggattcca ctttgggaga ctcttctcca tcattttcaa       300
     cagtgaagaa atgggctgct gaatttaaac gtggccgttc atccatcttt gacgatgaac       360
     gttcgggtcg cccgaaaacc gccacgaatg aggaaatcat tcaaaaaatc cacgatagcg       420
     tgttaaatga tcgacgagta aaagtgcgtg agctttctaa cattgcaaac atctcaatag       480
     atcgtgttca caatatctta catgaacatt tgcatatgag aaagctctca gcgcgatggg       540
     tgccgcgttt gttaacggtc gatcagaaac gcattcgaac gaacatttct caagagtgct       600
     tggacttgtt taaacgcaat tcaaccgaat ttctgcgacg atttatcact gtcgatgaaa       660
     catggattca ccattacacg ccagagacga aacaacaatc aaaacaatgg gtggaagcgg       720
     gtggaagtgc tccaaagaag gcaaaaacag ttccatcagc cggaaaagtc atggcgactg       780
     ttttttggga ttcgcaaggt gtggtgttca tagattatct agaaaaaggc aaaaccatca       840
     atggggaata ttatgcagca ttgctggagc aattgaacga tgctattaaa accaaacgtc       900
     ctcatttggc aaagaaaaaa gtgcttttcc atcacgacaa tgcacccgct cacacgtctt       960
     caattgcagt tgcaaagctc catgaattgc gtttcgaatt gttaccacac gcaccgtact      1020
     cgccagattt agctcccagt gacttctttt tgtttccgaa tatgaaaaaa tggcttgctg      1080
     gaaaaaaatt cacgtcaaat gcggaggtca tcgctgagac ggatgcttat tttggaggct      1140
     taagcaaatc gtattatact gagggtataa aaaaattaga acatcgttgg tctaaatgta      1200
     ttgagttgaa aggggactat gttgaaaaat aaaaaagatt tttgctggaa atcatgtgtt      1260
     ttctttgcca ggccgagaac ttttcgaact accctcgta                             1299
//
ID   Mariner-3_DAn repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1642
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 259-259 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 214-bp TIRs. TA TSDs. ~92% identical
CC   to Mariner-1_DT.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..1397
FT                 /product="Mariner-3_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MKKLSADTENSIVAMTKSGFSTRKIAEKLKISQSVVV
FT                 KVKKRQNVASENVLNGRPRLLTDSDARLIMSNMRKDKLLTPANASTELNKP
FT                 VSRWTARRALARIGYVASVKKNKPALSEKNVKARLQFAKTHKNWTIEDWKR
FT                 VIWSDESKFNRFQSDGKQYYWHRPGDKLQRHHVKQTVKHGGGNVMAWGCFT
FT                 WWHVGPLHKIDGIMRKEDYLNILKTHLHNFLDKCAYPEGEITFQQDGDPKH
FT                 TAKIVKEWLAKQNFKVMEWPAQSPDLNPIENLWSIVKRRLGQYQSAPSNLD
FT                 DLWRRVEIEWNQIPKEIIENLVNSMPKRIKNVIDNKGLWTKY"
XX
SQ   Sequence 1642 BP; 558 A; 289 C; 316 G; 479 T; 0 other;
     cagtggggag caaaagtgat tccatgttca gaatatgcat gttgaaccgc tcataaaacg        60
     taaaccaatg aaccaaatga aacaaacttt ttttttctcg attacttatt taatttgtaa       120
     gaaatagact taaatactac aataatacaa gaaaaaatgt aagagataga aaaaaaaaac       180
     aaaaacagaa ggcatgtact cagttttgca ccttccaata ttcgcacctg attttgctct       240
     ccctgttttc ttatcaccaa aatatttgca gatttactgt tttatgtctt tttcatgcat       300
     tagttgttgt cataattcaa agagtcgcac atttcttata gttcaaagta aattttaata       360
     aattgagaaa ttagtcgcca acttatattt gtaaaatgaa gaagctatca gcagataccg       420
     aaaatagtat tgttgctatg actaaaagtg gcttttcgac acgcaaaatt gctgaaaagc       480
     tgaaaattag tcagtctgtg gtggtcaagg tgaaaaaaag gcaaaatgtt gcttccgaaa       540
     atgtgttgaa tggtcgcccc cgtctcctaa ccgactctga cgctcgactt ataatgtcca       600
     acatgaggaa ggataagctt ttaacaccag caaatgcttc tacagagtta aataaacccg       660
     taagtcgatg gacagctaga agagcactgg ctagaattgg atatgtcgcc tctgtgaaaa       720
     aaaataaacc agctctatcc gagaaaaatg ttaaggctcg gttacaattt gcaaagaccc       780
     acaaaaactg gactatagaa gactggaaac gtgttatctg gtcggacgaa tccaagttta       840
     accgtttcca gtcggatggg aagcagtact attggcatag gcccggtgac aagcttcaga       900
     gacatcatgt aaagcaaacc gtaaagcatg gaggaggaaa tgtaatggct tgggggtgct       960
     ttacatggtg gcacgttggg ccattgcaca aaattgatgg aataatgcga aaagaggact      1020
     atttaaacat tttaaagacc catcttcaca attttctcga caagtgtgcc tatcctgaag      1080
     gagaaatcac tttccaacag gatggggatc ctaagcacac cgcaaaaatt gtaaaagaat      1140
     ggttggcaaa acaaaatttt aaggtcatgg agtggccagc tcaaagtccc gacctcaatc      1200
     caattgaaaa cttatggtca attgtgaagc gacggctcgg gcaatatcaa tcggccccaa      1260
     gcaacctgga cgatctctgg agacgcgtgg agattgaatg gaaccaaatt cctaaagaaa      1320
     ttatagagaa cttagttaat agtatgccaa agcgcattaa aaatgtaata gacaataagg      1380
     gtctttggac taaatattaa tttaatattt ccttaaattt ttccattaaa ggtgcaaaac      1440
     tgagtacatg ccttctgttt ttgttttttt tttctatctc ttacattttt tcttgtatta      1500
     ttgtagtatt taagtctatt tcttacaaat taaataagta atcgagaaaa aaaaagtttg      1560
     tttcatttgg ttcattggtt tacgttttat gagcggttca acatgcatat tctgaacatg      1620
     gaatcacttt tgctccccac tg                                               1642
//
ID   Mariner-3_DBi repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-3_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1650
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 738-738 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 232-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           455..1387
FT                 /product="Mariner-3_DBi_1p"
FT                 /note="transposase."
FT                 /translation="MVCLSPSTVQYIIQRFVRENREEDRGRVAPNKIFNDH
FT                 EERRIVRKVRETPKLSAPKIAAEIEEEMGKKCCPDTIRNVLHKHNFNGRVA
FT                 LKKPFISDKNRIVRFKFAKEMETKPISYWNDVIFADESKYNIFGSDGRHYV
FT                 WRRPNTELDTKNLKATVKHGGGHVMVWGCMAASGVRNLVFIDGIMDAKMYL
FT                 YILKENLLQSAESLGILDRSIFYQDNDPKHTAADVKFWLVWNCPHTIKTPA
FT                 QSPDLNVIENLWEILDQAIRKRKISNKTELKSALLEEWRKIPVETTKKLVE
FT                 SMGNRLKSVKKQKGGPTKY"
XX
SQ   Sequence 1650 BP; 574 A; 276 C; 329 G; 471 T; 0 other;
     cagtggctcg aagcttattt cgtgcaagag aaaaattaaa ttttaaatcg tcattgctgc        60
     taaactagga acgatatcaa caaaatttaa acgcagtaat tcaaataaac tcttaattta       120
     ttaatataac aaaacaaaat tacttaatct aaaaaaacaa aacaaatttt catataaaac       180
     taaaaaacaa ggcatttctg gcgtcgaagc ttaattcgtg caaagacttt aaactcaaaa       240
     aaaacataaa aaagggactt ttcaatccgt tttttttctg tatacttgtt tatttgtatt       300
     cttaaataaa cattttatac gttttcggag ctggttacac taaagtaaaa tttaccggta       360
     atttttggct atgggtccgc gaacaacgat cgagcaaagg gaattagtcc ttaaacactt       420
     taaggatgga taaacccagc gtgccatagc cgaaatggtt tgcttaagcc ccagtacggt       480
     gcaatatata attcaaagat ttgttcgcga aaatcgagag gaagataggg gccgagttgc       540
     gccgaacaaa atttttaacg accacgagga gcgccgaata gtccgaaaag ttagggaaac       600
     ccccaaacta tcggctccaa aaatcgctgc agagatagaa gaggaaatgg gcaaaaaatg       660
     ttgcccagac acaattcgca acgtactgca caagcataat tttaatggtc gagttgctct       720
     aaagaaacca ttcatcagcg acaagaacag aattgttcgt ttcaagttcg ccaaggagat       780
     ggagactaag ccgatttcgt actggaatga cgttattttt gcggacgaat ccaaatacaa       840
     cattttcggg tcggatggga ggcattatgt ttggcggcgt ccgaatacgg agctagatac       900
     aaaaaatcta aaagctacgg tcaagcacgg tggaggccat gttatggttt ggggctgtat       960
     ggctgcgtct ggggtgagaa acctagtctt cattgatggc attatggatg ctaagatgta      1020
     tttatatatt ttaaaagaaa acttactaca aagcgcagaa agcttgggaa tactggaccg      1080
     ttccattttt tatcaagaca acgacccgaa gcacactgct gccgatgtga agttttggtt      1140
     ggtctggaac tgtccacaca ccataaaaac accagcacaa tccccagatt taaacgttat      1200
     tgaaaatttg tgggagattt tggaccaagc gatccgcaaa aggaaaattt ctaacaaaac      1260
     tgagctaaag agtgccttat tggaagagtg gcgtaaaatt cctgtggaaa caacaaagaa      1320
     attagtggag tccatgggaa atcgtcttaa atcggttaag aaacaaaaag gcggtccaac      1380
     aaaatattaa atttaagaaa taaaaatgtt acaatatatt taagtgcttg cacgaattaa      1440
     gcttcgacgc cagaaatgcc ttatttttaa gttttatatg aaaatttgtt ttgttttttt      1500
     agattaagga attttgtttt gttatattaa taaatgaaga gtttatttga attattgcgt      1560
     ttaaattttg ttgatatcgt tcctagtttg gcagcaatga caatttaaaa tttaattttt      1620
     ctcttgcacg aaataagctt cgagccactg                                       1650
//
ID   Mariner-3_DBp repbase;    DNA;    INV; 1620 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1620
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 586-586 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TA TSDs, ~45-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1620 BP; 562 A; 282 C; 295 G; 478 T; 3 other;
     cctcagtaaa attggtatat gtgcaagatt tgttttctat atttctccta ttttattagc        60
     tctagaagtg ttttgagtac acacgatttt tctccgatgt ccctcaatta cacatcattt       120
     attagtttct tatctgtccc catcctattg caccgttatc ccaaagaata acgmaaggag       180
     gggaatttaa tagaaagttg atatatgtgc aaaaagcttc attcacgttt ggagtgggtt       240
     ccggcaaggt cctagtaaaa caaagataac aaatttgact gtttacattt taaaatttaa       300
     ttaaaaatta tcttgagcta taaaaaatag gtttgcgtta aataaattgt attaaatatc       360
     aaaaatgcca cgagcaaccg aattatctaa agaagagcag atccaaataa gaactatggc       420
     tgactgtggc gtcaaagttg gtgctattgg taaaacaata aatgggcatc gaaacactgt       480
     aggaaacttt ttaaagtcac cccaaaaata tgccgaaaac aatcgcaaag gtgcaattcc       540
     aaagattgat aaccgcacta agcggcacat tagagctttg gcatctgcca aaaatttgag       600
     ctgtgccaaa attaaggcac aattgaagtt accaatatgt aggcaacggg tgtaacaaat       660
     ttgccgaaaa gatttgcatc tcacatacga agcaaaggtc ccgaaaccta agctattgcg       720
     gcggcataaa atggctcgac tagcctatta ggagaaattt aaattttgga ccaccgaatt       780
     ccaaaatgtc atcttcagtg atgaaaaaaa atttaattta gatggccaag atggaaatca       840
     aaagtattgg cgagacccca ggcatcccag acaaacttgc macagacgca accatggtgg       900
     tggttccctt atggtatggg ctgcctttag ttacttcgag aaatcgccta tatgctttgt       960
     gccatgtcgc atgaacgcgg aaacgtatac taatctcttg gaaagtgagc tagtaccatt      1020
     ttccgaagag tttcatcccg gaaatttttt ctttcaacag gataacgctc ctatacacgt      1080
     agcgcggtgt acgaagacgt ttctggaaag taaatcwatc gatttgatgc agtggccagc      1140
     tttaagtccg gacttaaatc cgatcgagga tctttggggc atcctgtcag taaaagtttt      1200
     cggaggtgga acgaaattta agacccttaa ggaattaaag gcggccattg ttaatgaatg      1260
     ggcatccatt gatatagctg tcctccaaaa cttggcaaat tcaatgccga agcgattgaa      1320
     attattagat cagcaaaaag gagacacgat actatattaa ttaaaaagtt aacttatatt      1380
     acaaatttat ataatatttt ttttgtcact taaatagttt tgcacatata tcaattttct      1440
     atgaataata gttttaagtt cctatataaa tatcaaacaa tgatctatta aatatatgtt      1500
     aagttcattc aatttgtaca tttactacct acatatataa aatgaataaa aaaatctaac      1560
     atgaaggagt tagaaaaaaa tcaagaaaaa cacgttgcac atttatcaat tttactgagg      1620
//
ID   Mariner-3_DEl repbase;    DNA;    INV; 785 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-785
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 416-416 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 36-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 785 BP; 227 A; 156 C; 177 G; 225 T; 0 other;
     taaagggttt ttcaataggt gcgcttcaac ttttttccga tagggacggc gaacgacgcc        60
     atgtttttcc ttgttctctt gacatatgaa acttcattag tatacatttc atcatggaac       120
     gctacacact tgaacagcga ttgcaaattg tgcaaatttt ttatcaaaat aatcgttctg       180
     ttgctgctac tttaagagca ttacggccat tttacggtcc atttaacaag ggccggcccg       240
     gggcttcgac aatcgaccgt ctagtggcaa aatttgagtc tacgttttcg ctacataatg       300
     ttccggtgcc cgtgagagca agaagtgctc gaagtgatgc tcaacaggac ggggccacat       360
     gccacacagc acacgctaca atcgcaatat tgaaaactaa gttcgatgag cgtgttattt       420
     cgcgaaatgg accggtcgag tggccgccgc gctcgtgtga tttgacacct ctagactatt       480
     ttctttgggg ttacgtgaag tcattggtct atgccaataa gccggcgacg ttgcaagagc       540
     tcagagccaa tattgaacgc gaaattgctg gaatttcgac cgatttatgc gaaaaagtgg       600
     ttgaaaattg ggttcaacga ttggacttcg taaaacgtgc acgcggtggt catgcgaaag       660
     aaatcgagtt tcataattaa atgtatatgt tcaaattcga taataaaaaa aagttagttg       720
     aaaagtcaaa ccgtttgtgt tttattaaaa aaaaagttga agcgctccta ttgaaaaacc       780
     cttta                                                                   785
//
ID   Mariner-3_DEu repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1664
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 755-755 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. ~600-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1664 BP; 528 A; 291 C; 319 G; 512 T; 14 other;
     cagtggctcc aagcttattt cgtgcaagaa aaaatcgaat ttttaatttg atactgctac        60
     taaaccagca gaggtatcaa aaaaatttaa acgcagtaat gttaagaatg tcgcatatta       120
     ttaaaataat aacaaaagtt tttactaatt taaaaaacaa aagaattttt catacaaaaa       180
     ctaaaaaata gggcagctcc gacgcacaag cttatttcgt gcaagcactt taacggttaa       240
     taactctaaa ctaggacttt taaatccatt ttttttctta atactagtaa aaatatatta       300
     acaaaagcat atttataagt tttcgaggct gggggcaccc aaaaattacg gattaacgag       360
     gattttcaaa ctatggcgcc acgaataata gtcaatagtt tgttgagcaa agcgaattag       420
     tccttaaaca ttttaaggat gggaaaaccc aggaaatggt tgcctcaagc cctagtacaa       480
     acccatacat aacccaaacg cttttttgcg aaaatcgggt ggcagawaag ggccgtgatg       540
     cwccgaacam aatttttaat gaccaggagg agagacgtat tgtcccaaaa gtgaaggaaa       600
     accccaagst atcggctccw aaaatagttg mggagatcga gaacgaaatk ggcaaaaaat       660
     gttgcccagg tacagttcgg agcacttwgc akaaccacma ctttaatggt cgagttccta       720
     gaaawaagmc cttcgtwagt gctaaaaata agttggcgcg cgtcaaattc gccagggaac       780
     ttgaaactmg tccgattttg gtctggaacg acgttatatt tgtggacgaa tgtccaaatg       840
     taatatattt gggtcccata ggaggaaata tgtttggcgg cgtcccaata cagagctaca       900
     ttcaaaaaac aaaaaagcag cggctaagca cggcggtggt catgctatag tttgggcatg       960
     tatgactgtg tccggcgtcg gaaatttggt ttttattgac ggaatcatgg atgccaataa      1020
     atattcaact attttgaaag aaaatttggt gcaaagcttg gggttttcct tcacttttgg      1080
     gacaatacgt ctctcctcct ggtcattaaa aattttgttc ggtgcattac cgcccctttc      1140
     tgccccccga ttttcgtaaa aaagcgtttg ggttatgtat gggtttgtac tagggcttga      1200
     ggcaaccatt tcctgggttt tcccatcctt aaaatgttta aggactaatt cgctttgctc      1260
     aacaaactat tgactattat tcgtggcgcc atagtttgaa aatcctcgtt aatccgtaat      1320
     ttttgggtgc ccccagcctc gaaaacttat aaatatgctt ttgttaatat atttttacta      1380
     gtattaagaa aaaaaatgga tttaaaagtc ctagtttaga gttattaacc cttaaagtgc      1440
     ttgcacgaaa taagcttgtg cgtcggagct gccctatttt ttagtttttg tatgaaaaat      1500
     tcttttgttt tttaaattag taaaaacttt tgttattatt ttaataatat gcgacattct      1560
     taacattact gcgtttaaat ttttttgata cctctgctgg tttagtagca gtatcaaatt      1620
     aaaaattcga ttttttcttg cacgaaataa gcttggagcc actg                       1664
//
ID   Mariner-3_DF repbase;    DNA;    INV; 939 BP.
XX
AC   .
XX
DT   27-SEP-2011 (Rel. 17.06, Created)
DT   27-SEP-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-939
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 770-770 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..882
FT                 /product="Mariner-3_DF_1p"
FT                 /translation="MNNYIEQRICLKFCVANKISCTDALKMLQKAYGDAVL
FT                 SRTRAFEWYKAFQEGREIVEDMPRSGRPSTSLTDTNIDAVKEFIFENHHVS
FT                 LREIAQVLNISHESIRTILTDRLGMKRVAARLVPKELNFLPHRATIVNEYK
FT                 VKNSINTIEQAPYSPDLAPCDFFLFPRLKLPLRGTRFSTIEDIKQNSAREL
FT                 KAIPENAYKKCFEDWKNRWHMCIASNGDYFEGDKINLDE"
XX
SQ   Sequence 939 BP; 273 A; 184 C; 200 G; 282 T; 0 other;
     taccttctgt caaaaaagta ccgggactgg attaattaaa acgcctgtgc taaaccgatt        60
     tcggaaattt ttttttgtta tgttggtaac actgttctgc attactaagt aaagtttgat       120
     cgcgatctgt gaagtagttt gtttacagtc gctggttacg tcagtctatg ttctgattgc       180
     ttgccgaatt ttataatgaa caactatatt gaacaaagaa tttgtcttaa attttgtgtt       240
     gcgaacaaaa tttcttgtac tgacgcgtta aaaatgttgc agaaggctta tggtgatgca       300
     gttttatcga gaacacgtgc ttttgagtgg tacaaagcat tccaagaggg tcgtgagatt       360
     gtcgaagaca tgcctcgttc gggacgacca tccacctctc tcaccgacac taacatcgat       420
     gcagtgaagg aatttatttt tgaaaatcat catgtcagct tacgagagat agcacaagtc       480
     ctgaacatct ctcacgagtc aattcgtacc attttgactg accgtttggg tatgaaacga       540
     gtcgctgcac ggcttgttcc aaaagagctg aatttcctgc cgcatcgagc taccattgtc       600
     aacgaataca aggtcaaaaa ctcgataaat accatcgaac aagctccgta ttcgccagat       660
     ttagctccgt gcgacttctt tttgtttcct cgactcaagt tgccgcttcg tggaacccgt       720
     tttagcacca ttgaagacat taaacaaaat tcggcacggg agttgaaggc tatcccggaa       780
     aacgcttata aaaaatgttt cgaagactgg aagaatcgct ggcatatgtg tattgcctct       840
     aatggggact actttgaagg cgacaaaata aatttggatg aataaataga aaatgtgagt       900
     gttattaacc cagtcccggt acttttttga cagaaggta                              939
//
ID   Mariner-3_DK repbase;    DNA;    INV; 1628 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1628
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1196-1196 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 252-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1628 BP; 562 A; 287 C; 327 G; 449 T; 3 other;
     cacttgctct catatctctg cgtacaggac aataaaaaat cataacattg actttaatgt        60
     caaataactc tgcaaatatt ttgcactgcg aatcaaaaat tggttcaatc tattagtcat       120
     tcaattgacg tcgcctcttt atttttgcag aattatgagc ctagcggttt tcttataatg       180
     accattttac ccaaacccct ttaaaaatag cagtctcaaa agtgtgcgta cagcaaagaa       240
     gatcgtaatt taatgtccaa tgcaattcta tttttgttta aagttcgctt tgattctttg       300
     attaatcaat ttttaatggg taatatatgc atttgtgact atggtgtcta agggaaagca       360
     gatatgcgct tacgaaagaa aaatcatact taaactgcat cttaaaggca aaagctacag       420
     gaagattgga aaawccattg gcagatcgca ctcatctgtt caaagagtta ttaccaatta       480
     cgcaaagtcg ggatctatct tatcagcgcc cagatctggc cgtccaagca agttaatgaa       540
     aagagaaaaa tcaaaaattc tccaactagt ccagaacaat ccaaaattaa cagcgcacaa       600
     gcttaaactg gaaggtgagg aatggttttc caaaaccgta tcagataata ccatacgacg       660
     ggcaataaaa aaaggtggat acaaaagccg cgtggccaga aggaaaccwt ttatttccga       720
     aactaataag aaaaagcgat tggattttgc aaatgaccac ataacgaagc catccgagtt       780
     tggaataaag tcattttttc ggacaaaagc aagttctgca ttttcggcat taaggggaaa       840
     aaatwtgtgt ggcggaagag tggtactgcc ttggaaaagc aaactttaat gcctaccgta       900
     aaacatggag gaggcaaagt tatgatatgg ggatgtatgg cggccaacgg cgtggaaaat       960
     ctttccttta tagactcaat tatggaccat agggcctata ttgacatact gaaggcaaat      1020
     ttggttgaaa gtgatagacg gttaggtctg gaaggggact ttatttttca acaagattat      1080
     gacccgaaac acactgccca caatgtcaag ctttggcttc tgtataatac aaaaaaacag      1140
     ttgcgaactc ctccataatc accagacttg aatccaatcg aacatttgtg ggatcttttg      1200
     gagcgtcgta tacggaaacg catcattaca tccaaaccta tgctaaaggc tgtaatctta      1260
     gaggaatggc agaaaataac agcagaggat acaagaaaac tagtggaatc gatgcctaaa      1320
     cgtctgaggg aagttttgaa gactaagggc tacccgacaa gttactaatc agtaaataaa      1380
     agacgatctt ctttgctgta cgcacacttt tgagaatgct atttttaaag gggtttgggt      1440
     aaaatggtca ttataagaaa accgctaggc tcataattct gcaaaaataa agaggcgacg      1500
     tcaattgaat gactaataga ttgaaccaat ttttgattcg cagtgcaaaa tatttgcaga      1560
     gttatttgac attaaagtca atgttatgat tttttattgt cctgtacgca gagatatgag      1620
     agcaagtg                                                               1628
//
ID   Mariner-3_DMel repbase;    DNA;    INV; 1624 BP.
XX
AC   .
XX
DT   20-AUG-2018 (Rel. 25.03, Created)
DT   20-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   DNA transposons from fruit fly, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-3_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1624
RA   Bao W.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 20(3), 584-584 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(315..545,526..843,831..908,910..1350)
FT                 /product="Mariner-3_DMel_1p"
FT                 /translation="AFWNAKSRLPTLARVSEHAKQINRSSRTVDRYLKDPE
FT                 AYGNNFKGKKRHYQNKQNAKLLEMLRILLSLLLRSRNFPEDQGIFRSKSKL
FT                 INCSAYNQQFRTPEASKNQEKPPLNAKCKEKRLQFAKEYMKWNVQSDTRLN
FT                 DWRSVVFTDEKRFNLDGPDGFQYYYHDLRKDXLYLSRHHSREGEPRRGIMV
FT                 WGAITFYGTIDLIFIDQKMTAIASKQLLESVFPKLKDLFGPIPWIFQQDNA
FT                 PIHNSRVVKSFISSQNVNIMTWPPYSPDLNVIENAWGWLTRKVYEGGKQYE
FT                 DKEALTAAIKRAWSEISLSYIDSLYHSMKDRIYEVITNKEAVLITEIIFLL
FT                 QINQIVTPTNNLS"
XX
SQ   Sequence 1624 BP; 566 A; 284 C; 288 G; 485 T; 1 other;
     cactgctgct ggtcttaggt tagacgcacc atcgtttttt taagcaaaat caattattca        60
     ttcctgaatg cttgttctca ttgtccaaaa tgcttttctt atcaaagttt gaatcatgtt       120
     cgaaaaaaaa atgctcaacg ggtgtgattt gcgaaaaaat aacggtacat tcgaagattc       180
     tacaaatttc tttggcaatc acacgtgttt tcggttgatc gaattagacg cagcttaaat       240
     ttcttcatat tgcgtagaca agtgtaaact tttgtattaa aaaaatataa aatacaaagg       300
     ccgctctgtt atgagctttt tggaacgcaa aaagtagact tcccacactc gcgagggtct       360
     cggaacatgc caaacagata aatcgcagct ccagaactgt tgacagatat ttgaaggatc       420
     cagaggcata tgggaataac ttcaaaggaa aaaaaagaca ctatcaaaac aagcagaacg       480
     ccaaattgtt agaaatgctt cgaattctac taagtctgct gctaagatca aggaattttc       540
     cggagtaaaa gcaagcttat caactgttca gcgtacaatc agcaattcag aacacctgaa       600
     gcgtctaaaa atcaagaaaa accccccttg aatgcaaaat gcaaagaaaa acggcttcaa       660
     ttcgcgaagg aatacatgaa gtggaatgtc caatctgaca ctcgtctaaa tgattggcgt       720
     tcagttgtct ttactgatga aaaacgtttt aatttagatg gccctgatgg atttcaatat       780
     tattatcacg atttgcggaa agatkagcta tatttaagtc gccaccatag ccgagaaggg       840
     gaataatggt gtggggtgct atcacatttt atggaacaat tgacttgatt tttatcgatc       900
     aaaagatgaa cggcgatcgc ttcaaaacaa ttgttggagt ccgtatttcc aaaattaaaa       960
     gatctttttg gaccaattcc ttggattttt caacaagaca atgctcctat tcataattct      1020
     cgagtagtaa agtcttttat ttcgagtcaa aacgttaata tcatgacctg gccaccatat      1080
     tctccagatc ttaacgtaat tgaaaatgct tggggctggc taacacggaa agtatacgaa      1140
     ggaggaaagc aatacgaaga caaggaagcg ttaactgcag ctattaaacg tgcttggagc      1200
     gagatttcct tgagctacat agattccttg tatcattcta tgaaggaccg gatttatgaa      1260
     gttattacta acaaagaggc agtactcatt actgaaatta tttttttatt gcaaataaat      1320
     caaatagtaa cgccaactaa taatttaagt taaaattcaa atacttttcc tataaaaatt      1380
     aaaaagccaa cgtgcgtcta ttctaatgac caagaaaaat tcgccttatt ttgactagct      1440
     ttaataaaat gttagaaaaa cacaatttgg ttaaatatgt ataatcattt caatattata      1500
     ttaaaagtat cattaaataa gaaatgtttt tgcatatcca cttcttttct atcgtccttt      1560
     gataaataaa tatgaagcaa agttgtatgc aacttaaggt gcgtctaacc taagaccagc      1620
     agtg                                                                   1624
//
ID   Mariner-3_DMo repbase;    DNA;    INV; 1738 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1738
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1738 BP; 586 A; 301 C; 343 G; 508 T; 0 other;
     catatataca gaggtggtca aaagtaatta cacaccgagc ttttttctgc atgctcagct        60
     ttaaaagctt gttgttgttg ttgttgttcg ctgtttttga aaaaaagctt ttgtgtcata       120
     aagcttattc tgtgtagaag cgatcggcaa aaagaaattg ctaaaataac ggtacaggtt       180
     cgtagatata gcaaaaagaa cagttaccta gaggttgtca aaagtattta cacacatttt       240
     ttttgcgtca taagtattta cacaatgtaa atttgccttt agtctttgat ttgcgttgat       300
     catgtgcggt ctttgactaa gatcggaatt caatttgtag ttgaaattgt agatgtgctg       360
     taaaatggta aaaacaaagg aactatcagt cgaaacaaga tccgagatcg taaccaagtt       420
     taagagtggt gttggggcat cggagttggt aaagatattc aaaatatcta gaaaaacggt       480
     gtataacttg gttaacaaaa gggatacact tggaaatttg aataatttac accgaagtgg       540
     gcgaaagcca gcattgaaca ccagggaatg cagaagactt gtcagcacat tcgtagaaaa       600
     ccccgagata agcccagtta aagtgtctgc agcatcacaa cagataattg gtaaacatgt       660
     cagtgatgct actattcgta gaaggttaaa ggatgttgac ataaacacct atgtcgtccg       720
     aaaaatcatt gatatctcgg aagcaaacaa agcaaaacgt cttgcttttg ctttagagta       780
     cattgaaaag cctttggagt tttggtacaa cattttgtgg acagatgagg ttgcatttca       840
     gtttcaaggc tcatttcgaa agacttttat gcatttaagt cgacaaaata aaaaaactgc       900
     agtgcagcct cttagcaggt ttggaggtgg cacagtaatg ttttggggtt gcatgtcgta       960
     ctatggtttt ggagattttg tgccaataga gggcactctg acccaatcac gatatttgca      1020
     catattaaat gacaatgctt ttacttcggc gaacaaacta tttccaacaa tcgaatgggt      1080
     attgcagcaa gacaatgctc catgccacaa aggctcaata cccaccaagt ttttggcgga      1140
     cttagatcaa gcaatcctgc cctggcctgc gcaaagtccg gaccttaaca ttattgaaaa      1200
     tgtttgggct ttaataaaat ccaaacggct attcaaaaag gaccggaaac gggatgatac      1260
     cattcaggaa gttaccggaa tatggtcgga gctcacagtt gacttcgccc gatcattggt      1320
     aacatcaatt ccagccaggc ttcaggctgt aattgacgaa aaagggggaa tgacaaaata      1380
     ctaaattaaa taaataaacc ctttattatg ttcaacaaaa attaaaaata aataacatta      1440
     attaatgcca ttaaaaaatg tttaaatttt gtgtaaatac ttatgacgca aaaaaaatgt      1500
     gtgtaaatac ttttgacaac ctctaggtaa ctgttctttt tgctatatct acgaacctgt      1560
     accgttattt tagcaatttc tttttgccga tcgcttctac acagaataag ctttatgaca      1620
     caaaagcttt ttttcaaaaa cagcgaacaa caacaacaac aacaagcttt taaagctgag      1680
     catgcagaaa aaagctcggt gtgtaattac ttttgaccac ctctgtatat acatataa        1738
//
ID   Mariner-3_DRh repbase;    DNA;    INV; 1244 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.08, Created)
DT   03-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1244
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1397-1397 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1166
FT                 /product="Mariner-3_DRh_1p"
FT                 /translation="MEFANAEIRAVLKFSFVKGKSARETFREINGVLGDGT
FT                 LSLRTAEEWFRRFRAGENDTMDKPAGGRPVTTNTDQIMENIELDRHVTSRD
FT                 IAEEIGVSHQTVLNHLQKAGYKKKLDVWVPHDLTQKNLLDRINACDMLLKR
FT                 NELDPFLKRMVTGDEKWITYDNIKRKRSWLKAGESSKTVAKPGLTARKVLL
FT                 CVWWDWKGIIHYELLPYGQTLNSTIYCEQLDRLKLAIDQKRPELANRKGVV
FT                 FHQDNARPHTSLMTRQKLRELGWEILSHPPYSPDIAPSDYHLFLSMANALT
FT                 GVKLGSKEEGSFYEGGIMKLPSKWEHIIEQNGAYFS"
XX
SQ   Sequence 1244 BP; 368 A; 259 C; 314 G; 303 T; 0 other;
     aggttgtcaa atatctccct tccgcttttt ttggtttttg aatttggcgg ctttgtgcaa        60
     agcgctacat atcggtatcg ggcaatgcta tatatcgatt gaaaggtctt gacataacct       120
     acaaaacgac gctattcata acaagtttgg ttattgcgtt gaaaagttat acatgtgtaa       180
     acatggagtt cgctaacgcc gaaattcgcg ctgttttaaa gttttccttc gtaaaaggta       240
     aatccgctag agaaacattc cgtgagatta atggtgtttt aggggatggt actctatcac       300
     ttcgaaccgc ggaggaatgg tttcgacgat tcagagccgg tgaaaacgac accatggata       360
     agccagccgg cggaagacct gtgacgacga ataccgatca aatcatggaa aacatcgagc       420
     tagaccggca tgtgacatct cgtgacatcg ccgaggagat aggagttagt caccaaaccg       480
     ttttaaacca tctgcagaag gctggataca aaaaaaagct ggatgtttgg gtgccgcatg       540
     atttgacgca aaaaaacctg ttggacagaa tcaacgcctg cgatatgctg ctgaaacgga       600
     atgaactcga cccatttttg aagcggatgg tgactggcga cgaaaaatgg atcacatacg       660
     acaatatcaa gcgaaaacgg tcgtggttga aggccggtga atcgtccaaa acagtggcca       720
     agccgggatt gacggccagg aaagttttgc tctgtgtttg gtgggattgg aagggaatca       780
     tacactatga gctgctccca tatggccaga cgcttaattc taccatctac tgcgaacaac       840
     tggaccgctt gaagctggcg atcgaccaga agcgaccaga attggccaac aggaagggtg       900
     tagtgtttca ccaggacaac gccagaccac acacttcttt gatgactcgt cagaagctac       960
     gggagctcgg atgggagatt ttatcgcatc caccatatag cccggacata gcgccaagtg      1020
     actaccacct gttcctgtcc atggcgaatg cccttactgg tgtaaagttg ggctcaaaag      1080
     aggagggaag tttctacgag gggggtatta tgaagttgcc gtctaaatgg gaacacatta      1140
     tcgaacaaaa cggcgcatat tttagctaaa tccgttcact gtatcaattt ttataaagca      1200
     ttgaataaag agcaaaaaag cggaagggag ttatttgaca acct                       1244
//
ID   Mariner-3_Dro repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   13-MAR-2012 (Rel. 17.07, Created)
DT   06-JUL-2012 (Rel. 17.07, Last updated, Version 2)
XX
DE   DNA transposon: consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-3_Dro.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RA   Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S.,
RA   Nielsen R., Thornton K., Hubisz M.J. et al.;
RT   "Comparative genome sequencing of Drosophila pseudoobscura:
RT   chromosomal, gene, and cis-element evolution.";
RL   Genome Res 15(1), 1-18 (2005).
XX
RN   [2]
RP   1-1648
RA   Jurka J.;
RT   "DNA transposons from Drosophila pseudoobscura and D.
RT   persimilis.";
RL   Repbase Reports 12(7), 1178-1178 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 29-bp TIRs. TA TSDs. It is share by
CC   two closely related Drosophila species (D. Pseudoobscura and D.
CC   persimilis). Likely it was active in their common ancestor.
XX
SQ   Sequence 1648 BP; 542 A; 287 C; 331 G; 484 T; 4 other;
     cagtggcgcc gaaaaaaata gcaccagtag ggacgaccgt ctttattcct tcaaaacaag        60
     acctctgtcc aacatttgct ggactttact gcaatataat gtagctttat atgtctcctc       120
     tctgagagaa gtgtgcttac tctctcaatt ctaacggttc ttataacatt aggcaatttt       180
     gcgaaagagg agcgaaatgg agcaccaaca aaaatagcac cagtaactgt tttatgtaaa       240
     agcttctact tttckgagct tcttgatatt ttaagttctt gattgaatta aaaatcggtg       300
     gctttaggtg attgtgacaa gaaagttaca aaatttaagt agttatgggt cttggaaagc       360
     actaaagtga agaaaaaagc caaaggatca aaactttcat ttcagaaggc aggacctatg       420
     ctaaggtggg gcaaattgtc ggttgttcaa aagaaatgat tagcaatgct tttaaatatg       480
     tttccaacaa gaatcacgtg gaagaaaggc cgcgatattc ccatttctgs taaaactact       540
     ggttcgtgag agcaaggagg acccatttaa gtcggccaca gagctaaagc aaggatctta       600
     aaaaatcgtc aagtaccagg aaagttagat cttgtwtaca agaacgtaaa atgggtactc       660
     gtagtacgag gaaaattcca cttttcacgg aaaggcatgg ggcaaaaaaa gtttggtgtg       720
     caaaatagca ctaaagttgg gccaaagaaa atggagaaac atcctgtggt ccgactaaag       780
     ccaaaattta ttttttggtg taaaagggtc ttgttcttgt gtgaaacgac taccgaatgc       840
     agaatacaac cccctgactc acatgtaaat tcattagaca tagaaaagca agcaaaatcg       900
     tatgggcatg attttcgtac taggcaggtg acccaataca tggcacaacc ccattatgga       960
     tcaacatgtc tatgtcaata tcaaagaaac agtgattctg ctttatgcag aatacgaaat      1020
     agagttgttt tgtaacttcc agcaggaaaa tgacccaaaa cgatctagaa agagagctcg      1080
     aaagtggttc gagcacaatt cwcttagtgc aatggattgg cctgttcagt ctccagactt      1140
     gaaccccatt gctaatgttt tgggtcaagc taaaaaatat gtttctaatg cggaatcaaa      1200
     gaacattaaa tatgtttggg gtatcctgca tggttcgtgg atcaatatcc caaggaaaag      1260
     atgcgaaaat taggtgagct ttaatgccaa tatgttgagc tgctgttgtt gctgccaaag      1320
     gttttacaac aaaacgccaa cctttaaata caactaaagt aacatatttt acaaaaaaat      1380
     ttggaaagtt tccttgtatt ttatagtttt ttgatttctt tgtaaattgg tgctattttt      1440
     gttggtgccc aaatttctga taaaatcctt ttcttttcaa atattttcat ttggagtttg      1500
     cgaattatgc cagtgctctg ggatacgata aattatacct taaagtttac atattagtct      1560
     taacaacgtt cattagaacc attgcttaag caaaatccgt caatatagac acattagtcc      1620
     actggtgcta tttttttcgg cgcagctg                                         1648
//
ID   Mariner-3_DSuz repbase;    DNA;    INV; 1634 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1634
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 91-91 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus.
XX
SQ   Sequence 1634 BP; 588 A; 261 C; 330 G; 449 T; 6 other;
     cagtggcgtg caggtctgag tacatgtttg caactattga ctttgggccc gcataaaaaa        60
     mttatwagta aaktaaatga wgccaaattt ttcgtgttta ttccwtgaat atttattaac       120
     aaattcttat acaaaatata acaaaataaa ctaattggtc tcattaagaa ataaaaaacc       180
     aaataaactc acatatactc agttatgctc aatttgaact tttcaacaaa agttgcacag       240
     ctgattcaat tgaaagctta attaccgaat cttaccgttt gtttttgaga agcttctgtt       300
     ttgaagtgct ttatgaatga ttttaactaa aaacgtacga aatctcactt gtttttgctt       360
     ttttgtatta aaaattaaaa aattaaaaat aattgtcaag agacgttgaa gattcagtag       420
     taaacctaac tgaaaatggg tgttcgacac gaataatatc caaaaagcta gaaatcagcc       480
     aatcagcagc cattcgtgtg caaaaaaggc gcaacgcggt acccaaggta caaagaagtg       540
     gtccacgtcg aattttgact gatgcagatg caaggcttat gatgcaaaaa attaaaaatg       600
     agaaaaattg taagcccaag gatgcatccg cagccatagg gaagcccgtc agccagtgga       660
     cagcgtgtcg agcacttagg cgcattggat acgcctcaga agtgaaaaag aagaaaccgg       720
     ccttgtccga taaaaatata aaagcgcgat taaaatttgm gagggcgcat aaaaattgga       780
     aactggatga ctggaaaaga gttatatggt ctgatgaatc taaattcaat cgataccagt       840
     cggatggtaa acaatattgc tggaagaagc ctgaagagtc gttgcagaaa cgtcacgtac       900
     aagaaactgt gaaacatggg ggaggaaatg tcatggtctg gagctgtttt acttggtgga       960
     gcgttggacc aattaagaaa atagatggaa ttatgaagaa ggaggactat ctagatattt      1020
     tgcagaccca tctttgcgat tttgttgaca aatgtgcgta taaggagagt gacatcacat      1080
     tccaacaaga tggcgatcca aaacacacgt ccaaagtcgt caaagaatgg atcgcaaagc      1140
     accattttaa gttaatggag tggccagcac agagtcctga tctcaatcct atcgaaaatt      1200
     tgtggtcgat agtgaaaaga cgattgggac tctacgaatc ggtaccagca aaccagcacg      1260
     agttgtggca acgagtccat caagaatgga gagctattcc aaaagaaatc atacaaaatt      1320
     tggtggaaag tatgccagat cgaataaata gcgtaattag aaataagaaa taagggtctt      1380
     tggaccaagt attaaaaaat aagcgtttgt tgaaaaattc aaattgagca taactgagta      1440
     catgcgagtt tatttggttt tttatttctt aatgagacca attagtttat tttgttatat      1500
     tttgtataag aatttgttaa taaatattca aagaataaac acaaaaaatt tggcttcatt      1560
     tactttatta ataacttttt tatgcgggcc caaatcaata gttgcaaaca tgtactcaga      1620
     cttgcacgcc actg                                                        1634
//
ID   Mariner-3_DT repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   06-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DT.
XX
NM   Mariner-3_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1294
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1438-1438 (2012).
XX
RN   [2]
RP   1-1294
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (06-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   TA TSDs. 28-bp TIRs.
CC   [2]: Sequence updated. 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-3_DT_1p"
FT                 /translation="MEKIEYRAVIKFLFLKGNTPSQIKDELDSVYGDSAPS
FT                 FTTVKFWAAEFKRGRRSLEDDERPGRPKTVTTNDNIAKVHQLVLDDRRIKV
FT                 REIAEIMKMSKERVCHILNQDLGMRKLSARWVPRLLTLDHKRARMNISSAL
FT                 LAQFRGNKTEFWRRLITVDETWIHHYTPETKIQSKQWIEKGEPAPKKPKAV
FT                 YSAGKVMASVFWDSHGIIFIDYLEKGKTITGAYYASLLDKLKEEISKNRPH
FT                 LQKKKVLFHQDNAPSHTSTVAMAKIHELRFELLDHPPYSPDLAPSDFFLFP
FT                 QLKTALGGQRFSSNEEAISFVNSYFADKDVKYYLEGLQRWEHRWEKCVQLQ
FT                 GDYVEK"
XX
SQ   Sequence 1294 BP; 409 A; 259 C; 286 G; 340 T; 0 other;
     cgagggctgt ccgataaata accgacctca acgtcaagat agcggcacat ctgaaaaaaa        60
     agtgtctact tcaaattgtg catattataa aagctactcg ccaaaatttc agaaatttat       120
     cttgcgcaat tatctgttga cagtcgtttt tgtgagtcta tttcggtgat ttccccaaaa       180
     tggaaaaaat tgaatatcga gctgtaatta aatttttatt tttgaaaggc aatacgcctt       240
     cacaaatcaa agatgagttg gactctgtgt atggtgactc tgcaccatcg tttaccaccg       300
     taaaattttg ggcagctgaa tttaaacgtg gtcgcaggag cttggaagat gatgaacgtc       360
     ctgggcgtcc aaaaactgta accactaacg ataacatcgc taaagttcat caattggtac       420
     tagacgaccg ccggattaaa gttagggaaa tagctgagat tatgaagatg tcaaaagaac       480
     gtgtttgtca catattaaac caagatttgg gcatgagaaa gctgtccgcg cgttgggtgc       540
     cgcgtttgct tacgttagac cacaaacgtg cgcgcatgaa catttccagc gctctgttgg       600
     ctcagtttag aggcaataag accgagtttt ggcgccgatt gataactgta gacgaaactt       660
     ggattcatca ttatacgccc gaaacaaaaa tccaatctaa acagtggatt gaaaaggggg       720
     aaccggcccc aaaaaaaccc aaagctgtgt attcggctgg gaaagtgatg gcgagtgttt       780
     tttgggacag ccatggaatt atttttatcg actatctcga aaaaggaaaa actataacag       840
     gagcatacta cgcatcatta ttggacaagc taaaggaaga aatttcgaaa aatcggccac       900
     atttgcaaaa aaagaaagtc ttgtttcacc aagacaacgc cccatctcac acctcaacag       960
     tcgccatggc gaaaatccac gaattgcggt tcgaactgct tgaccatcca ccttattcac      1020
     cggatctagc accaagcgac ttttttttgt ttcctcaact taaaactgcg ctcggcggcc      1080
     agagattttc gtcaaatgag gaggcaatct ctttcgtgaa ctcgtatttt gcagacaaag      1140
     acgtcaagta ctatttggaa gggttgcaga gatgggagca tcgctgggag aagtgtgttc      1200
     agttacaagg agactatgta gaaaaataaa aaaaaatttt ttgaaaaagt cgcgtgcatc      1260
     atggttaggt cggttattta tcagacagcc ctcg                                  1294
//
ID   Mariner-3_DYa repbase;    DNA;    INV; 1405 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Drosophila yakuba.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1405
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1744-1744 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~99% identity.
CC   TA TSDs. Almost hairpin (~670 bp TIRs).
XX
SQ   Sequence 1405 BP; 433 A; 271 C; 268 G; 433 T; 0 other;
     cactgacgag caaaactgta acacgagttg tatattctaa cttcaacggt cagtatcttc        60
     tctcctattt tatgtacgat aataatctta gtcttgtttt gttgctacta tatttgacta       120
     tcgcttgtga aaatatgaag cgatttgata atctggaata aatatgccga agcaaaatgt       180
     aaaagaagtc aaatgttaca gttttgcact ggggtgatat attaaacgaa aatttttttt       240
     taaattattt taataatgag tccacagccc ttttgatttt tttagctccg ttatgcgatt       300
     tggcatactt tgggtatacc gtagcaccat ttcaggagga atagcgtacc agacgtcctt       360
     tgttctttcc cacagctcca tcattccact tggaggggct gcatattttg ccagttggga       420
     ttttacatgg ctccacaaat tttcgattgg attcatatcc ggagattgcg gtggccactt       480
     caggactgaa gattttgctt ttccatccaa tttttcacta aattcgaagt gtgtttggga       540
     tcattatctt gctgaaatat gcatttttta gcagcaatac ccatattttg actcacttct       600
     ggaagatttt gttgcaaaat gtttaagtac tgttccttcc gcattatacc ttcaattaac       660
     accaagggac cccgcggcgc cccccggatc gccaccgtgc cgcggtccgg gctgtataca       720
     caaaagcgga gttggtccct tggtgttaat tgaaggtata atgcggaagg aacagtactt       780
     aaacattttg caacaaaatc ttccagaagt gagtcaaaat atgggtattg ctgctaaaaa       840
     atgcatattt cagcaagata atgatcccaa acacacttcg aatttagtga aaaattggat       900
     ggaaaagcaa aatcttcagt cgctgaagtg gccaccgcaa tctccggata tgaatccaat       960
     cgaaaatttg tggagccatg taaaatccca actggcaaaa tatgcagccc ctccaagtgg      1020
     aatgatggag ctgtgggaaa gaacaaagga cgtctggtac gctattcctc ctgaaatggt      1080
     gctacggtat acccaaagta tgccaaatcg cataacggag ctaaaaaaat caaaagggct      1140
     gtggactcat tattaaaata attttaaaaa aaattttcgt ttaatatatc accccagtgc      1200
     aaaactgtaa catttgactt cttttacatt ttgcttcggc atatttattc cagattatca      1260
     aatcgcttca tattttcaca agcgatagtc aaatatagta gcaacaaaac aagactaaga      1320
     ttattatcgt acataaaata ggagagaaga tactgaccgt tgaagttaga atatacaact      1380
     cgtgttacag ttttgctcgt cagtg                                            1405
//
ID   Mariner-3_FoCa repbase;    DNA;    INV; 1659 BP.
XX
AC   .
XX
DT   30-OCT-2019 (Rel. 24.12, Created)
DT   30-OCT-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1659
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2471-2471 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. TA TSDs. 211-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..1385
FT                 /product="Mariner-3_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MPGKHLSHDIRKLVISYHERGLKPTAISNKTKVKIPT
FT                 IKSMLSKWKKYHTITDLKGNSRRRVTTPRVDRLIQKKANSNRFLSARKINV
FT                 ELAQQFGTKISDSTIRNRIRNMGFKGRVATKKPLLTKPQIKKRLDWAKSHS
FT                 TWSVSDWKKVLWSDETKINIFGSDGKVFVWRKPGERVKSNCTKKTVKHGGG
FT                 SIMVWGAMSWKGVGTMEVIEGIMTKEVYQGILDRNLMKSRNSLRLGKNFVF
FT                 QQDGDPKHTSKLVTNWLQTKRVNVMKWPPQSPDLNPIEHLWSILKKKVAER
FT                 NPTSRTNLISIVDEEWNNIQKETTAKLVESMPNRVNAVLMAKGGHTNY"
XX
SQ   Sequence 1659 BP; 551 A; 321 C; 371 G; 416 T; 0 other;
     cactgagtgg aactgctgat catcctcacc tagtgcgctc ggttccaatg gtcaccgaaa        60
     ggggcatagc cgaccaatat atgtcaaaaa agcatcagac gtgcagaaat atgtactaaa       120
     tcagtcaatt aagcaaaaac ttccaaaaag ttaactgcac tcattttaca cggaatgagc       180
     atagagtaag acacaagcgg gctcgcaact agtcttcatc cgccacaaca aaaacacaat       240
     tttcgagtgg aaacaatttt cttgatttat cattttttta tgcgggtaag tgcatcttga       300
     ttactattaa ttcaagtaat gaagaccatt ttattcattg tcattttggt ttttcagagc       360
     tgaaaatgcc tggaaaacac ttgtcgcacg acattaggaa attggtgata agttaccacg       420
     agagaggatt gaaacctaca gcaatcagca acaagacgaa agtgaagatt cccaccatca       480
     aatccatgct gtcgaaatgg aagaaatacc atacaattac tgatttgaag ggaaatagcc       540
     gccgtcgtgt taccactcct cgagtcgacc gacttatcca gaagaaagca aattccaatc       600
     gcttcttatc tgcccgaaaa atcaatgtgg aattggctca gcagtttggt acgaagattt       660
     ctgattccac tattcgaaat cggatccgaa atatggggtt taaaggccga gtcgcaacca       720
     aaaagccact gctgacaaag ccccaaatta agaagcgttt ggattgggcg aagagtcact       780
     ccacgtggtc cgtatccgat tggaaaaaag ttctttggag tgacgaaacc aaaataaaca       840
     tatttggatc agatggcaaa gtttttgtct ggagaaaacc aggagaacga gtcaagagta       900
     actgtaccaa gaagaccgtg aagcatggtg gggggtccat tatggtttgg ggtgcaatgt       960
     cgtggaaagg cgtgggaacc atggaagtaa ttgaaggaat tatgacgaaa gaagtgtacc      1020
     aagggatttt ggaccgaaat ttgatgaaat ctcggaacag cctgcgacta gggaagaatt      1080
     ttgtcttcca acaagacggg gaccccaaac atacgtccaa attggtcacg aattggctgc      1140
     aaacaaaacg ggtaaacgta atgaaatggc cgccacagag cccggattta aatccaattg      1200
     aacatttatg gtcaattttg aagaaaaaag ttgctgaaag gaacccgact tccagaacaa      1260
     atttaatttc aattgtggac gaagaatgga acaacatcca gaaggaaaca acagcgaaat      1320
     tagtggaatc gatgccaaat cgagtcaatg cagtcctgat ggccaagggt ggtcacacaa      1380
     actactaatt gtaaaattaa gttggtaaat ctaaaaataa atggaatttg ctttaagcgg      1440
     atgagcagta gttgcgagcc cgtttatgaa tttctccatg ttaatgtcgt ataaaatgca      1500
     tctagataac tttctacaag tttttgatga atagactgat tgataacata tttctgcaca      1560
     tttcatgcca ttttgattgg tattggtcgg ccgtccccct ttcggtgacc attggaaccg      1620
     agcgcactag gtgaggatga tcagcagttc caccgagtg                             1659
//
ID   Mariner-3_HSal repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-3_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 843-843 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1209
FT                 /product="Mariner-3_HSal_1p"
FT                 /translation="MEKSNEKLRYILQYYYDKGKNAAQACEKICAVYGEGT
FT                 LSKSAARKWFARFRSGNFDVKDESRSGRPITEKADEILEKVQQDKHISSVD
FT                 IGMELGIDHKTVLNHLHKAGYKKKLDVWVPHELSAKNMIDRINICDALLKR
FT                 NEIEPFLKRVITGDEKWITYDNRKRQRSWTRDGEPSQAFAKPGLTPKKVML
FT                 CVWWDWKGIVHHELLPVGQTIDSQLYCGQLERLRQAIERKRPELNNRKGVV
FT                 FHHDNARPHTSLMTRQKLRELGWEVLMHPPYSPDIAPSDYHLFRSLQNSLN
FT                 GIKLVSKEACENHLIQFFNQKPQKFFTDGIMALPEKWRNIVDNNGAYLV"
XX
SQ   Sequence 1291 BP; 405 A; 255 C; 301 G; 330 T; 0 other;
     tattgggtct gggaaaaagt tcgtggcgtt tttcccgata gatggcgtca attgcaaata        60
     actcaggaaa cacagatcgc agcgacacca ctaaacgctc gttggaaagg tgacacttcg       120
     agcgttactt tgagtgtata aacatcgaaa ttggtgcagt ggttggaaag ttgtttgcgt       180
     ttgaaaatgg agaaaagtaa tgaaaaattg cgctatattt tgcaatatta ttacgacaaa       240
     gggaagaacg ctgcgcaggc ttgtgaaaaa atttgtgctg tgtacggtga aggtacttta       300
     tcaaaatctg ctgcgcggaa atggttcgct cgctttcgtt ctggtaattt tgatgtgaaa       360
     gatgagtcac gctctggtcg tccaatcact gaaaaagctg atgaaattct tgaaaaagtc       420
     cagcaagata agcatatcag cagtgtcgat attggtatgg agctaggcat tgaccacaaa       480
     actgttttga accatttaca caaagctggc tacaaaaaga agctcgatgt atgggttcct       540
     catgagttga gcgcgaaaaa catgatagac cgaattaaca tctgcgatgc gctgctgaaa       600
     cgcaatgaaa tcgagccatt tctgaaacgt gtcataaccg gtgatgaaaa atggatcacg       660
     tacgacaatc ggaagcgtca aagatcgtgg acaagggatg gtgagccgtc acaagcgttc       720
     gcgaagccag gattgacgcc gaaaaaggtg atgctgtgtg tgtggtggga ctggaaggga       780
     atcgtccacc atgagctact tccagttggt cagacgattg attctcaact ctactgtgga       840
     caactagaga gattacgcca ggcaattgaa agaaaacggc ccgaattgaa taataggaaa       900
     ggtgttgtct tccatcatga caacgcccga ccacacactt ctttgatgac ccgtcaaaaa       960
     ttgcgagagc ttggttggga agttttgatg catccaccgt atagtccaga catagcaccc      1020
     tctgactatc acttgttccg atctctgcag aactctctca atggaattaa gctggtttca      1080
     aaagaagcct gtgaaaacca cttgattcag tttttcaacc agaaaccaca gaagttcttc      1140
     accgatggca tcatggctct acccgaaaaa tggcgaaaca ttgtcgataa taatggagca      1200
     tatttggttt aaataaattc attttcacac tataagaaaa ccagttgaat tttactaaaa      1260
     aaacgccacg aactttttcc cagacccaat a                                     1291
//
ID   Mariner-3_LHu repbase;    DNA;    INV; 3131 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3131
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 361-361 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. ~1400bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1783..2868
FT                 /product="Mariner-3_LHu_1p"
FT                 /translation="MAYAKLSEQERVSLLMMRGWGDRVRSYNEVRVLFNRT
FT                 FRNGDGLSPVSKSTVERTVRRFMDNGTVKDLERSGRPKSVASEEKQIEIAQ
FT                 AFVENPHLSLRRAGNEHDASHETVRKVLKSIHFHPYKIHLVQELNEDDPDR
FT                 RIEFSETMMNRIDEDPLFLYNIVFSDEATFTLKGEVNRHNCRYWSETNPAW
FT                 MLDSHTQYPQKLNVWAGILNDTLIGPFFIDGNLNAGMYEQLLRNQIIPRIR
FT                 EIAGNNYDDTWFQQDGAAAHYGRDVRAYLDTQFPHKWIGRRGEIEWPARSP
FT                 DLTPLDYFLWGYLKSKVYATQPQNLDELRNRIMQEAALIDRVMIRNAVSHF
FT                 YNRIAFCQEAQGLQFEHLR"
XX
SQ   Sequence 3131 BP; 928 A; 652 C; 647 G; 901 T; 3 other;
     tacttttagc attacccagg aataacgacg tggacgtagt aaaatctatt ccctttgggg        60
     tgcttaatta gcgtgagtcc ccttgcctct cacgtccggg gtgcttgatt agcgtgagtc       120
     ccctcgcctc tcacgtccgg ggtgcttgat tagcgtgagt cccctcgcct ctcacgtccg       180
     gggtgcttga ttagcgtgag tccccttgcc tctcacgtcc ggggtgcttg attagcgtgt       240
     tttctttcaa gattcgaagt ttagcgcaga tgttcaaact gcaaaccttg agcttcttga       300
     caaaaagcta tgcggttgta aaaatgagat acagcattac gaatcatcac tctatcaatt       360
     aaagcggcct cttgcataat ccgattccgc agttcatcta agttttgtgg ttgagtggcg       420
     tatactttac tctttaagta accccaaaga aaataatcaa gaggcgtcag atcaggggat       480
     ctagccggcc actcgatttc acctcttctt ccaatccact tatgaggaaa ctgagtatct       540
     aaatacgctc gaacgtccct accgtaatga gcggctgctc cgtcctgctg aaaccatgta       600
     tcatcataat tattacctgc tatttctctt attcttggta taatttgatt tctgagcagc       660
     tgttcataca taccggcatt gagattacca tcaataaaaa aagggcctat aagtgtatca       720
     ttcaagatgc cagcccaaac atttagcttt tgtggatatt gtgtgtgact gtccaacatc       780
     caagcaggat ttgtttcgga ccagtatctg caattgtgtc tatttacttc accttttaaa       840
     gtgaaagtag cttcatctga aaaaactata ttgtacaaaa aagaggatct ttatcgattc       900
     tgttcatcat cgtttcgcta aattcgatcc gacgatcagg atcatcttca ttaagctcct       960
     gtaccaaatg aatcttgtaa ggatgaaaat gtatgctttt caaaacttta cgtactgttt      1020
     catgagaagc gtcatgctca ttaccggctc tacgtagact aagatgcggg ttttcaacaa      1080
     atgcttgagc aatttcaatc tgtttctcct cagatgctac agattttggc cgaccacttc      1140
     tctcaaggtc cttgacagtc ccattatcca taaagcgccg tacagtcctt tcgactgtag      1200
     attttgagac aggacttaac ccgtctccat tacgaaaagt gcgattaaat agcacccgaa      1260
     cttcattata agatcgcact cgatctcccc aaccacgcat cattaataga gataccctct      1320
     cttgttccga aagtttagca tacgccataa tgttttcttg agattaaggt aatacgtaaa      1380
     tcgtatgtat gtatttacgt aaatttagtt ttgattcgta aattcgtata agatagaaaa      1440
     atggcgacag anattcatcc gcaaataata aaatgaaacc tatcatttag aatgacaaac      1500
     gacttctatg aaaagaaata tttgtaaaga aaaataagaa ttaaatcgna taacttttac      1560
     tttacgacgt aagcgctccc antcaataaa aaaatgagtt agcattatgt taaacaacct      1620
     gggcaaaatc ccgagttaac tcgtccaaac gaagttgtca ccgtatgcac agtggcgagt      1680
     ttactcgtca taacacgtat ttgtatgtac gataactgtt gatgtattgt catctaccac      1740
     cactcaacta cgatttacga tttacacacg acattaaaca ttatggcgta tgctaaactt      1800
     tcggaacaag agagggtatc tctattaatg atgcgtggtt ggggagatcg agtgcgatct      1860
     tataatgaag ttcgggtgct atttaatcgc acttttcgta atggagacgg gttaagtcct      1920
     gtctcaaaat ctacagtcga aaggactgta cggcgcttta tggataatgg gactgtcaag      1980
     gaccttgaga gaagtggtcg gccaaaatct gtagcatctg aggagaaaca gattgaaatt      2040
     gctcaagcat ttgttgaaaa cccgcatctt agtctacgta gagccggtaa tgagcatgac      2100
     gcttctcatg aaacagtacg taaagttttg aaaagcatac attttcatcc ttacaagatt      2160
     catttggtac aggagcttaa tgaagatgat cctgatcgtc ggatcgaatt tagcgaaacg      2220
     atgatgaaca gaatcgatga agatcctctt tttttgtaca atatagtttt ttcagatgaa      2280
     gctactttca ctttaaaagg tgaagtaaat agacacaatt gcagatactg gtccgaaaca      2340
     aatcctgctt ggatgttgga cagtcacaca caatatccac aaaagctaaa tgtttgggct      2400
     ggcatcttga atgatacact tataggccct ttttttattg atggtaatct caatgccggt      2460
     atgtatgaac agctgctcag aaatcaaatt ataccaagaa taagagaaat agcaggtaat      2520
     aattatgatg atacatggtt tcagcaggac ggagcagccg ctcattacgg tagggacgtt      2580
     cgagcgtatt tagatactca gtttcctcat aagtggattg gaagaagagg tgaaatcgag      2640
     tggcctgcta gatcccctga tctgacgcct cttgattatt ttctttgggg ttacttaaag      2700
     agtaaagtat acgccactca accacaaaac ttagatgaac tgcggaatcg gattatgcaa      2760
     gaggccgctt taattgatag agtgatgatt cgtaatgctg tatctcattt ttacaaccgc      2820
     atagcttttt gtcaagaagc tcaaggtttg cagtttgaac atctgcgcta aacttcgaat      2880
     cttgaaagaa aacacgctaa tcaagcaccc cggacgtgag aggcaagggg actcacgcta      2940
     atcaagcacc ccggacgtga gaggcgaggg gactcacgct aatcaagcac cccggacgtg      3000
     agaggcgagg ggactcacgc taatcaagca ccccggacgt gagaggcaag gggactcacg      3060
     ctaattaagc accccaaagg gaatagattt tactacgtcc acgtcgttat tcctgggtaa      3120
     tgctaaaagt a                                                           3131
//
ID   Mariner-3_LMi repbase;    DNA;    INV; 1318 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1318
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3005-3005 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           530..1168
FT                 /product="Mariner-3_LMi_1p"
FT                 /translation="MRRVAAKFVPKLLTGDQRDRRVRACHEMKDAFKDDPH
FT                 FFNKIVTGDESWCYGYDPESKQQSSQWKSPGSPRPKKARQVKSNVKTMLIC
FT                 FFDIKGIVHSEFVPENQAVNQQFYLEVMKRLRRSLSRKRRLCGILACGSCI
FT                 TTTLPRTRLSAFASFWPNEDDYLDPRALFAGFSTLGLLPIPEDEKRLEREA
FT                 FCGCGRRKTQCHESASRYQRGRI"
XX
SQ   Sequence 1318 BP; 371 A; 282 C; 341 G; 324 T; 0 other;
     cgagggggga cccaaaaata accggaatcg taatgctgca catcgtgtac ttgtagtagc        60
     aggttgcgcc gccagagggt tgtagtagga gctctgctga gtcattctgc cacgcggcgt       120
     cacccaacag tgagaagtgt ggtttctttg gcagttcttt gagtgtgcgt acagtgcaga       180
     cgtgacacga ggaaatggct agttcttacg aacaacgtgc ggcagtgaag ttttgtttct       240
     tgctcggcaa gaacgcagca gaaactgttg cgatgattca gacagcctac aaagaccgtg       300
     ctcttagtaa aacgcaagtg tacgaatggt tttctcggtt taaaaaggga gaaatggtgg       360
     tcgaagatca gccccgttcg gtcgaccttc aactgctcga agcgaagaca acatcgacaa       420
     aatccgtgat ctcatcagtg aagatcgatg caggacaatc gaccaactcg agaacttgtc       480
     cgggttgtcc tggagctcaa ttcagcgcat cttgaccatt gatttgggga tgcgaagagt       540
     ggcagcaaaa ttcgtgccga agcttcttac cggagatcaa agggatcgtc gcgttcgagc       600
     ctgtcacgaa atgaaggacg cgttcaaaga tgatccacat tttttcaaca aaatcgttac       660
     aggtgatgag tcatggtgct atgggtacga tccagaaagt aaacaacagt catcacaatg       720
     gaagtcacct ggctcacctc gaccaaaaaa agctcgacaa gtgaaatcga atgtgaaaac       780
     gatgttgatc tgtttttttg acatcaaagg gatcgtacac tctgaatttg tccctgaaaa       840
     ccaggcagta aaccaacaat tctatttgga ggttatgaaa cggcttcgca gaagtttgtc       900
     gcgaaaacgt cggctttgtg ggattctggc gtgtggttcc tgcatcacga caacgctccc       960
     gcgcacacgg ctctcagcgt tcgccagttt ttggcctaac gaagacgact accttgaccc      1020
     acgcgcccta ttcgccggat ttagcaccct tggacttctt cctattcccg aggatgaaaa      1080
     gagacttgag agggaagcat tttgcggatg tggaagacgt aaaacgcaat gtcatgaaag      1140
     tgctagcagg tatcaaagag gacgaattta aaaggtgctt cgaacactgg aatgaacgtt      1200
     tggacaagtg tattaatgct aatggagagt acttcgaagg agattaaggt tgtatttgaa      1260
     aacaataaag tatatgcttt ctagaaagaa attccggtta tttttgggtc ccccctcg        1318
//
ID   Mariner-3_MMo repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1281
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6265-6265 (2021).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1207
FT                 /product="Mariner-3_MMo_1p"
FT                 /translation="MSEISEEIRYVMLFYYKKGKNAAKTCRKICAVYGENT
FT                 VSERRTQEWFARFRSGNFDIKDAPRSGRPVTEKVDEILQLVEQDRHASCEE
FT                 IAEALNINHMTVWNHLQKAGYKKKLDVWVPHELTQKNLIDRISIAEMLLKR
FT                 NEIEPFLKRLVTGDEKWVKYKNYKRMRSWSKAGDPPQTTSKPELSAKKVML
FT                 SVWWDWKGIVYYELLQPGETIDSNLYCAQLDRLNKAIQKVRPELANRKGVV
FT                 FHHDNARPHTSLMTRNKLTELGWEVLMHPPYSPDLAPSDFHLFRSLQNSLS
FT                 GKKLANLNAAENYLAKFFNDKPQKFYADGIMKLPEKWKKVIDNNGQYVID"
XX
SQ   Sequence 1281 BP; 430 A; 213 C; 267 G; 371 T; 0 other;
     ggtcatataa aaagtctccg cggttttttg ctactaaatg tttttgatgc ttatatattg        60
     ggtaatagtc acccgattgt tccaaaagag catgcgctta aaaagtcgta tttcagttta       120
     cattattggt taagtttgtt ttcaaattcg ttgttcgtct aaaagttata ttgatttgat       180
     aatgagcgag atatctgaag aaatacgcta tgttatgctt ttttactata aaaaaggtaa       240
     aaatgctgca aaaacatgtc gtaaaatttg tgcagtgtac ggcgagaata ctgtgagtga       300
     acggaggacg caagaatggt ttgctcgatt ccgttccgga aattttgata ttaaagatgc       360
     accccgctct ggtcggccag tcactgaaaa agtcgatgaa attttgcaac tagtagagca       420
     agatcggcac gcaagctgtg aagaaatagc ggaggcatta aacatcaatc atatgacagt       480
     ttggaaccat ttgcaaaaag caggctataa gaaaaaactt gatgtttggg tacctcatga       540
     actgacacaa aaaaatttga ttgaccgaat tagcatcgcg gaaatgctac tgaaaaggaa       600
     cgaaattgaa ccttttttga aacgacttgt tacaggtgat gaaaaatggg tgaagtacaa       660
     aaattataaa cgcatgcgat catggtcaaa agctggtgac cctccacaaa cgacttcaaa       720
     gcctgaatta tcagcaaaaa aagttatgtt gagtgtttgg tgggattgga agggaattgt       780
     atattatgag ttgcttcaac ctggtgaaac catcgattca aatttgtact gtgctcaact       840
     tgaccgtctg aacaaagcaa tccaaaaagt gcgaccagaa ttggccaata gaaagggagt       900
     tgtatttcat cacgataatg cacggccaca cacatctttg atgactcgta acaaattgac       960
     ggaacttggt tgggaagttc tgatgcatcc gccgtatagt ccggaccttg caccgtctga      1020
     cttccatttg tttcggtctc tgcaaaattc tctttctggc aaaaagctgg caaatctaaa      1080
     cgctgctgaa aattacttag caaagttttt caacgataaa ccacagaagt tctatgctga      1140
     tggaattatg aagctacccg aaaaatggaa gaaggtcatt gataataatg gtcaatatgt      1200
     tattgattaa aagttgtttt caataaacaa aaaaattgtt ttataatgta ataaaaaacc      1260
     gcgaagactt tttatatgac c                                                1281
//
ID   Mariner-3_PBa repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   25-SEP-2011 (Rel. 19.03, Created)
DT   25-SEP-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1281
RA   Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 615-615 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1204
FT                 /product="Mariner-3_PBa_1p"
FT                 /translation="MAITKEHIRFSIHFAFHLKKNAAEATAMICAAYGENA
FT                 VSHTTCKRWYQKFRQGDFSLEDEPRAGRPQKIETDELQALLDINSAQTEKE
FT                 LAEQLGVTQQTISVRLHTMGKVQKEGRWVPHELSEDNKNRRRDTALTLLSK
FT                 FRKKDFLHKIITGDEKWILYDNPKRRKSWVDPGQPSTSTPKPNIHAKKVLL
FT                 CIWWDWKGVLYYELLQPGETITADRYQQQLTNLSDALEEKRPFTGQGRRKV
FT                 ILLHDNARPHVAKATQDHIFALGWELLPHAAYSPDMAPSDYYLFRSLQHHL
FT                 ADTHFVRFEEIRKCIDDFIASKPVSFYRQGIRKLPERWQKVVDANGEYFAD
FT                 "
XX
SQ   Sequence 1281 BP; 393 A; 264 C; 279 G; 345 T; 0 other;
     tattaggtgt acaaaaaagt tctgagcttt agatttcata caaccgaaat aacaatttaa        60
     attttatata tcttcccgcc cttttgcggt tttaaagcgt tgacatttgg ccttctaaaa       120
     tgccatacgg tttggcgttt gatgcacata acctcaaaaa tcagtagtgt tcacgatggc       180
     aataacaaaa gagcatattc gattttccat ccacttcgcg tttcatctga agaaaaatgc       240
     tgctgaagcc actgcaatga tttgtgctgc atatggagag aacgctgtaa gtcatactac       300
     atgtaaaaga tggtatcaaa aatttcgcca aggagatttc agtcttgaag atgaaccgcg       360
     tgctggacgc cctcaaaaga ttgaaacgga cgaattgcaa gcactgctgg atataaactc       420
     tgcgcaaact gaaaaggagc ttgcagaaca gcttggcgtt acgcagcaaa ccatttccgt       480
     acgtttacat acgatgggaa aggttcagaa ggaaggcaga tgggttccgc atgaattgtc       540
     cgaagacaac aaaaatcgtc ggcgtgacac tgcactcact ttgctttcaa agttccggaa       600
     aaaagatttt ctgcacaaaa tcattacagg cgatgaaaag tggattcttt atgataaccc       660
     taaacgtaga aaatcatggg ttgaccctgg tcaaccttcg acatcgacgc caaagcccaa       720
     tatccacgcc aagaaggttt tgctctgtat ctggtgggat tggaaaggtg tgttgtatta       780
     cgagttgtta caaccgggtg aaacaatcac ggcagaccgc taccaacaac aattgaccaa       840
     tttgagcgat gcattagaag aaaagaggcc atttactggc caaggacgtc gtaaagtgat       900
     cttgcttcat gacaatgctc gaccacatgt tgcgaaagcg actcaggacc atatctttgc       960
     gttaggctgg gaacttctcc cgcacgcggc gtatagccca gacatggcgc cttccgatta      1020
     ctacctattc cggtcgctgc agcatcattt ggctgataca catttcgtga gatttgaaga      1080
     gatacgaaaa tgcattgatg actttatcgc ttcgaagccg gtgagcttct atcgtcaagg      1140
     aattcgcaag ctacccgaaa gatggcaaaa ggtcgttgat gcaaacgggg aatatttcgc      1200
     tgattaatat ttttttgttt gtttttgaat aaagattgaa ttttacaaaa aaaagctcag      1260
     aacttttttg tacacctaat a                                                1281
//
ID   Mariner-3_PPo repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1296
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2747-2747 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. 27bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1191
FT                 /product="Mariner-3_PPo_1p"
FT                 /translation="MDKSELRAVIKYLSLKKMSTKEIFLDIQQTLGGDAVP
FT                 YSTVAYWVAEFKRGRSSCKDDPRSGRPSTSVTEENVKKVENLVLEDRRMTI
FT                 KHIAEILKISFGSVQSILIDSLGFKKVSARWVPRMLTDENKKRRLEISKRN
FT                 LEMFQRDSDNFCRRLVTMDETWVHHFDPETKRQSMSWKRPSSPSIKKFRVA
FT                 PTAGKVMASVFWDSEGILFIDYMPKGQTITGPYYANLIPKVREAIKEKRRG
FT                 KLSLGVLFLQDNAPAHRSEVALNAIRCAGFNLLDHPPYSPDLAPSDFHLFP
FT                 KLKEEIRGTKFHDNDAVIAAVEDFFESQENIFFFTRNKEVRNALF"
XX
SQ   Sequence 1296 BP; 400 A; 231 C; 272 G; 392 T; 1 other;
     cgagggtgaa tsaaaaagtt cttagaagtg catatatatg aaaccttttt ggatcaagtt        60
     cgatattcaa attaaagagt gtctatcaca ctatatttat gcacactgtc acttgttttt       120
     gtcagttcgt tcgcatgtaa taaatttttt tgtgcaacga gttgctaaaa agtcaaaatt       180
     atggataaaa gtgagttacg tgcggtgata aaatatctca gtttgaaaaa aatgtctacg       240
     aaggaaattt ttttggatat tcagcagaca ttagggggtg atgctgtacc ctattctacg       300
     gttgcgtact gggtggctga atttaaaaga ggtagatcaa gctgtaaaga tgacccgcgt       360
     tctgggcggc cttcaacctc cgttacagaa gaaaatgtca aaaaggttga gaatctggtt       420
     ttggaagaca gaagaatgac tataaaacat atagctgaga tcctaaagat atcttttggt       480
     agcgttcaat ccattttaat tgattcactg gggttcaaaa aagtgtctgc aagatgggtg       540
     ccacgaatgt taaccgacga aaacaaaaag cgacgtttgg aaatttccaa gcgtaatctc       600
     gaaatgttcc agcgtgattc ggataatttt tgccgtcgtc ttgtcaccat ggatgaaacg       660
     tgggtccacc attttgatcc tgaaactaaa agacaaagca tgtcttggaa acggccatcc       720
     tctccatcca tcaagaaatt tcgagttgct cctaccgctg gcaaagttat ggcctctgtg       780
     ttctgggata gtgaaggaat cctttttatt gattacatgc caaaaggcca gacgattact       840
     ggaccctatt atgcaaattt aatcccgaaa gtgcgtgaag cgattaaaga aaaacgtcgt       900
     ggaaaactgt cgttgggcgt gttgttcctt caagataacg ctcctgctca tcgatcggaa       960
     gttgcgctca acgcaatccg ctgtgctggc ttcaatctcc ttgaccaccc accatattct      1020
     ccggacttag ccccaagtga ttttcactta tttccaaaat taaaagagga aattcgtgga      1080
     acaaaatttc acgataatga cgcggttata gctgccgtag aggacttttt cgagagtcaa      1140
     gaaaatattt tttttttcac aaggaataag gaagttagaa acgcgttatt ctaaatgcat      1200
     tgcattggag ggagattatg tagaaaaata aaatattatt atttaaatct ttgcattttt      1260
     taatattgat tccaagaatt ttttgattca ccctcg                                1296
//
ID   Mariner-3_RPr repbase;    DNA;    INV; 1319 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 20.10, Created)
DT   01-JAN-2012 (Rel. 20.10, Last updated, Version -1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1319
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3249-3249 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..1208
FT                 /product="Mariner-3_RPr_1p"
FT                 /translation="MERYTAKERAFCVEAYFRDKSVVKVHRAFRKQFKVKS
FT                 NESVPTRKSILRWVENFRESGKTTDKIHPGAKRTVRTPENIGKVCQAIKIS
FT                 PTRSARRHAASLKLSRESVRRILTSDLNHHPYKLMITQELKETDYRQRLLF
FT                 AENMLKKLDDGEIDLNNLLMSDEAHFELSGSVNKQNFRYWASGNPQFIPEK
FT                 PLHSQRVTVWAGVASWGIIGPYFFDGTVNGERYREMLNSFLIPQLRRKRRL
FT                 NRTWFQQDGATCHTAALTLALLKETFGIRLLSRSSDFAWPPRSPDLTVPDF
FT                 FLWGYLKSRVYETKPRDLEDLKSRIRAEFAKISASMLKKVFKNFVKRLEEC
FT                 KAQNGHHLKDVIFHK"
XX
SQ   Sequence 1319 BP; 395 A; 261 C; 285 G; 378 T; 0 other;
     tacagggtga cccagtgaaa atgaccacat ttcttttttg aataactgtg gtggtaacac        60
     tgctacaggg acgaacgcgc gctctatggt tagtagagac ctgggagatt cctgttatca       120
     acattttagt aatcatggaa cgttacactg caaaagaacg agcattttgt gtagaagcgt       180
     attttcgaga taaatcggtt gtgaaagttc atagagcgtt tcgtaaacag ttcaaagtta       240
     aaagtaatga atctgttcct acgcgaaaat cgatcctcag gtgggttgaa aacttccgtg       300
     aaagtggcaa gacgactgat aagattcatc caggtgccaa aagaacagtt cgtacaccgg       360
     aaaacatcgg aaaagtttgc caagcaataa aaattagtcc aactcgttcc gctcgccgtc       420
     acgcagcttc tttaaagtta tcaagggaat ctgtgcgtcg aattctaacc tcagacttga       480
     accaccatcc atataagttg atgatcactc aagagttgaa agaaactgat taccgacaga       540
     gattactttt cgccgaaaac atgttaaaga aattggacga tggtgagatt gatttaaata       600
     atcttttaat gagcgatgaa gctcatttcg aactctctgg atcggtaaat aaacaaaact       660
     ttcggtactg ggcaagtggt aatccccaat tcattccaga aaaaccgtta catagccaac       720
     gagttacagt atgggccggt gtagcgtcgt ggggaattat cggaccgtat tttttcgacg       780
     gaaccgtcaa tggagagagg tacagggaga tgttaaactc gttcctcatc ccccaactcc       840
     gccgcaaacg tcgtttgaat cgaacctggt tccagcaaga cggggcaact tgtcacaccg       900
     ccgctcttac acttgcgttg ttgaaagaaa cgtttggaat tcgtttattg tcacgttctt       960
     cagatttcgc ttggccgcct cgctcgccag atttgacggt tccagatttt tttctgtggg      1020
     ggtatttgaa aagtcgtgtt tatgaaacca agccccgtga tctagaggat ttaaaatcga      1080
     ggattagagc cgaattcgca aaaatttcgg cttccatgct gaagaaagta ttcaaaaact      1140
     tcgttaaacg attggaagaa tgtaaagccc agaacggtca tcatttgaag gatgtaatat      1200
     tccacaaata atctcccatg tttctacttt tcaaagattt ttttgttact tttatatctg      1260
     taatactttt gttgttatta aagaaataaa tgtggtcatt ttcactgggt caccctgta       1319
//
ID   Mariner-3_SIn repbase;    DNA;    INV; 3064 BP.
XX
AC   .
XX
DT   15-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3064
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 320-320 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. ~670bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1404..2432,2436..2717)
FT                 /product="Mariner-3_SIn_1p"
FT                 /translation="MASNLVGQRGRVIGMWESGIGTREIARRIPCSEENVR
FT                 KWVRRYQEEGIEGLDDKRKHNRRPRLTSAEEDAALVNQVDAAPFLPVSHSV
FT                 NQLDLQISNRTAQRRLNEANVHCYRAARKIPLTRKHRDDRVAFALHQLDAA
FT                 SPEDWDRTIWTDEKVFCSAHDRRIQVWRPENRRLDPKYVVPYGKSGRITCA
FT                 MWGWISAHCPGELIEVSPHMNSFEYVNILENVLLPSVRRIYTEEDMPTFRL
FT                 VQDNSAVHTAHVVKEWFAQHPEIEVLDWPAKSPDLNLIENVWGIIANSWXX
FT                 GHERTREQLVAHAKNSWENLRRKPQYFAHLNDSVERRLQQVVAREGYWTDY
FT                 LVXVLFQTVLFRTTKLFNGGTFVKNAKFNXKNIYIKEPIKEPFLILINDLF
FT                 LYLSHLLIHVYLCCYVYLCLCKNNNIILNQIYTDRSTSGVNIT"
XX
SQ   Sequence 3064 BP; 1007 A; 509 C; 558 G; 980 T; 10 other;
     cccgcgcgcg cgcttttatt cggaagggac atgaataata aatatttggc acgaaganta        60
     tacgttactn attctcttag ttatcctctt cttttttctt agtccaattt aggttaaata       120
     tttttattat ttatgttaaa atgtctacgt gttaagctgc ataataaaat aaatagtaaa       180
     attaaaattc agcacacgac tttgatactt tgttttcaat ttcaaatatg aatttattta       240
     gtttaacgta attatgtttt ttctattgcg tataaacaat aatatattca tataattaca       300
     tacgcaaaat tgttaacgcc gaaatgcatg cagaataatc tccgttacgt tatgtttaca       360
     ccgctcgtag atctatccgt ataaatttga ttcagtatta tgttattatt tttgcacaga       420
     cagagatata cgtaacaaca aagataaacg tgtacgagga ggtgggaaag ataaaggaat       480
     aagtcattta ttaaaattaa aaatatattg gttctttaat aatatatatt ttttttnaat       540
     taaattttgt attcttgacg aatgttccat cgttaaataa tttggttctg aaaagaatcg       600
     tttaaatttt attggaacca actagtaaac ggtgcagtac tcttccgatg aaancatttg       660
     ctgcaatcta tttattggaa atattgcgta tattttaaaa atatctttcg gagtagttcc       720
     aaaatcttct catagtaatt acgttttata cattgtatat tgcaaaagaa atataaaaat       780
     gctgatgtat ctttatattt cctcttgatc attagcgttt taacatttcg tagttctatt       840
     aaaaaaactt tgctgacaaa tcaacacaaa caatgaatcg atagtttctg cacattattt       900
     acatttttat atagtaataa tttattaaat aaagattaaa taacaaaata cggaacacga       960
     aaatacgcat ggtcccaata aaaaatattt ctatgcattt aaagcttttt gatattaatt      1020
     acaacacatt ttatatatgt cgcaaaaaat ataaagacac aaatgattat acgtattttc      1080
     ggcttttgta attcattatt cttattttag aaattcttac taaatgtgta gataacgtgc      1140
     agatattatt tatcgattcg ttatttacgt tatttcatca gnagagtttt tcgaaaatta      1200
     aaatacgtgg tcgaagagta tcgcactttt tgacatcgtg tgacaatcgc gctcgcgctc      1260
     gcgcgcgcgc gcgcgacgcg attctccgtt gtctttcttt ttgcatctct tactgacatg      1320
     agaaaggaat attaacaaaa tgcaatcgct gatcaattca tgtgttttga cttctcgtct      1380
     aactcattcg ttctcgtgca accatggcaa gcaatctcgt gggtcaacgt ggccgcgtta      1440
     tcggaatgtg ggaaagtgga ataggcacgc gagaaatcgc gcgtcgtatt ccgtgcagtg      1500
     aggaaaatgt gcgaaaatgg gtcaggcgat atcaagagga aggtatagaa ggattggacg      1560
     ataaaaggaa acacaatcgt agaccgcgat taacgagtgc cgaagaagat gcagccttag      1620
     tcaatcaggt agacgctgct ccctttcttc cggtatcgca ttctgtaaat caacttgatt      1680
     tacagatatc taatcggaca gcgcaaaggc gtttaaacga agcgaacgtg cattgttatc      1740
     gtgccgcacg taaaattcct ctaacgagga aacatcgcga tgatcgtgtc gcttttgcgc      1800
     tgcatcaatt agacgcggct tcacctgaag attgggacag aactatctgg actgacgaaa      1860
     aggtattttg ttcggcacat gatcgtcgta tacaagtgtg gagacctgaa aatcgtcgcc      1920
     tggatccaaa atacgtagtt ccttacggca aaagtgggcg catcacttgt gctatgtggg      1980
     gatggataag tgctcattgt ccgggagaat taatcgaagt gtcgccgcat atgaattctt      2040
     ttgaatacgt gaatattctg gagaacgtgt tgctccccag cgttcgcaga atatacaccg      2100
     aagaagatat gccgacattt cggttagttc aagacaatag tgctgtccat accgcacacg      2160
     tagtaaaaga atggttcgct caacatccag agattgaagt tctcgattgg ccagccaaat      2220
     ccccggatct caatttaata gaaaatgttt ggggaataat tgcgaattcg tgggntnctg      2280
     gacatgagag aactagagaa caactggttg cacacgcnaa gaactcgtgg gaaaatttga      2340
     ggcgtaagcc tcaatatttc gcgcatttaa acgattcggt agagaggcga ttgcagcaag      2400
     tggttgcacg ggaaggatac tggaccgact attagttggt gncagtatta tttcaaacgg      2460
     ttcttttcag aaccaccaaa ttatttaacg gtggaacatt cgtcaagaat gcaaaattta      2520
     attnaaaaaa tatatatatt aaagaaccaa ttaaagaacc atttttaatt ttaataaatg      2580
     acttattcct ttacctttcc cacctcctca tacacgttta tctttgttgt tacgtatatc      2640
     tctgtctgtg caaaaataat aacataatac tgaatcaaat ttatacggat agatctacaa      2700
     gcggtgtaaa cataacgtaa cggagattat tctgcatgca tttcggcgtt aacaattttg      2760
     cgtatgtaat tatatgaata tattattgtt tatacgcaat agaaaaaaca taattacatt      2820
     aaactaaata aattcatatt tgaaattgaa aacaaagtat caaagtcgtg tgctgaattt      2880
     taattttact atttatttta ttatgcagct taacacgtag acattttaac ataaataata      2940
     aaaatattta acctaaattg gactaagaag aaagaagagg ataactaaga gaatcagtaa      3000
     cgtataatct tcgtgccaaa tatttattat tcatgtccct tccgaataaa agcgcgcgcg      3060
     cggg                                                                   3064
//
ID   Mariner-3_TCas repbase;    DNA;    INV; 1198 BP.
XX
AC   .
XX
DT   10-MAY-2011 (Rel. 24.09, Created)
DT   10-MAY-2011 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon from Tribolium castaneum - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-3_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1198
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1708-1708 (2019).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98% identity.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine:
CC   Tribolium castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..881
FT                 /product="Mariner-3_TCas_1p"
FT                 /note="DDE-transposase, fragment."
FT                 /translation="TALSSSWKKDEIKRWLEEKKXVHPQNAFKQEFLAIAK
FT                 SNKQDINYKVDKLVEEHGHKVLRLPPYQCHYNPIEHVWALSKTFYDKHIGK
FT                 VDSTDESILQTWQKALNQVTPEVWSNTVNHCDKLIEEDIKKQICLDQVQKE
FT                 IIINVNSDNDSDSDSDFGEFDDTASESESEMLIKS"
XX
SQ   Sequence 1198 BP; 417 A; 175 C; 219 G; 386 T; 1 other;
     tatagtaaaa ttcttttaat tttggccgaa tgttgtataa atgtatcaaa taacactttc        60
     ccatctgcta ctagttttgt ctttgttgtt actatgcgaa tgagtgaaac aaaatacaaa       120
     ccgtcaagcg tagcggaaaa tgggagggtc taccagtcgt tcccaaacta tgggatgcca       180
     ctttggtatt tgttatgttt attgttgtta aataaattaa tatgtctttt gtttgtttgc       240
     ctggtcaact ttataaacaa aatgtttact attaccaaca aatatacatg ttaattatga       300
     atttcaattt ggaagtgatt tttaaatccc aaagactttt taatgtgaac aatttgtaaa       360
     cagcattgtc gtcatcatgg aaaaaagacg aaattaaaag gtggcttgaa gagaaaaaaw       420
     tagtgcaccc acaaaatgct tttaaacaag aatttttagc aattgcaaag tctaataaac       480
     aggatattaa ttacaaagta gacaaacttg ttgaagaaca tggccataaa gtattaagat       540
     tgccgcctta tcaatgtcac tataatccga tagaacatgt ttgggcgtta agtaaaactt       600
     tttacgacaa acatatcggg aaagttgatt ctaccgatga atctatttta caaacgtggc       660
     aaaaggcttt aaatcaagtt acaccagaag tttggagcaa cacagtcaat cattgcgaca       720
     aactaataga ggaagacata aaaaaacaaa tttgtcttga ccaggtgcaa aaagaaatta       780
     tcattaacgt gaattcggat aatgatagtg atagtgatag tgatttcgga gaatttgacg       840
     atacagctag tgaaagtgag agtgaaatgt taattaaatc gtaaatagat ttgtaaatat       900
     tgtacattta atatttttat acattttttg taaataaaat ttacttgttg tctgcgcttg       960
     ttgcattatt tgaacatgtt gagaatcact gatatatttt gggtgggtgg cgtagttggg      1020
     cttgcgaaag tttcgtgtct cttttaaatg acctaagtgc gagaaagaca atatacccct      1080
     ggctcgagcc gagggcggcc catcgtttat cttacttgct cctagctact ttctcgaaga      1140
     gtaagaaaga caacaacgtt ttacaacatt cgaccaaaat taaaagaatt ttactata        1198
//
ID   Mariner-40_HSal repbase;    DNA;    INV; 1284 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-40_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1284
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 880-880 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..1094
FT                 /product="Mariner-40_HSal_1p"
FT                 /translation="MAVKETQRAKFDVILAIHLFLTAFQSYSLSTMEKLEY
FT                 RAVIKFLHLKGKTPTEIKAELDSVYGDAAPSFTTVKTWAAEFKRGRTSIFD
FT                 EERSGRPKTATTDEMIDYVHQIVMDDRRLTLKEIAEAAGISYERAHNILHE
FT                 ELGMRKLSARWVPRLLTVDQKRHRLDISRSCLERFKRDEKDFLRRFITVDE
FT                 TWVHHYTPETKEQSKQWTAKDEPTPKKAKAVPSAGKVMATVFWDSHGIIFV
FT                 DYLEKGKTITGEYYAGLLQRLDMEIKNKRPHLAKKKILFHQDNAPAHKSAV
FT                 AMAKLYELKYELIPHPPYSPDLAPCDFFLFPNLKNGYLGKNFRRMLK"
XX
SQ   Sequence 1284 BP; 401 A; 246 C; 299 G; 338 T; 0 other;
     cgagggtaga ttgaaaagtt tccgacctaa ccaagaaaga gcaagatttc agtcaaattt        60
     caatacttgt ccaatagatg gcagtgaaag aaacacaaag agctaagttt gatgtcattc       120
     tagcgattca tttgtttctg acagcctttc aaagttacag tttgtcaaca atggagaaat       180
     tggagtatcg cgccgtgata aaattccttc atttaaaagg gaaaactcct acggaaatta       240
     aagctgaatt agattcagtg tatggagatg ctgctccttc atttacgacc gtgaaaacct       300
     gggctgctga gttcaagcgt ggcagaacga gcattttcga cgaggaacgc tctggacgac       360
     caaaaaccgc aacaacggat gaaatgatcg attatgttca ccaaatcgtg atggacgatc       420
     gtcgattaac tttaaaagag atagcggagg ctgctggtat ctcatacgaa cgggcgcaca       480
     acattttaca tgaggaatta ggtatgagaa agctgagcgc gcgttgggtg ccgcgtttgc       540
     tcactgttga tcaaaaacga catcggttgg acatttcacg atcgtgtctt gagcgtttca       600
     agcgcgatga aaaggatttt ttacggcgtt ttattactgt cgacgaaact tgggtccacc       660
     actacactcc ggagacaaaa gaacagtcaa agcaatggac tgcaaaggac gaaccgactc       720
     cgaagaaggc gaaagcagtt ccgtcggctg gcaaggtgat ggccacagtt ttctgggatt       780
     cccatgggat aatttttgtg gactatttgg aaaaagggaa aacaatcacc ggagaatatt       840
     atgctgggtt attacaacgt ttggacatgg aaatcaagaa taaacgtccg catttggcca       900
     aaaagaaaat cctctttcac caggacaatg caccggccca caaatcagca gttgcgatgg       960
     cgaaattgta cgaactgaag tacgaattaa ttccacatcc accgtactct ccagatttgg      1020
     ccccgtgcga ttttttcctg tttccaaatt taaaaaatgg ctatctggga aaaaattttc      1080
     gtcggatgct gaagtgataa gtgccgttaa tgactatttt tcgggtttag acaaaagtta      1140
     ttatactgag ggaatgacag gtctagaaaa acgctggacc aagtgtattg agttgaaggg      1200
     agactttgtt gagaaataaa tttcatttag ctcaaaaaaa tgtttttttc ttagtcaggt      1260
     cggaaacttt tcaatctacc ctcg                                             1284
//
ID   Mariner-40_LMi repbase;    DNA;    INV; 2196 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2196
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 34-34 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           262..1701
FT                 /product="Mariner-40_LMi_1p"
FT                 /translation="MSPKRRLQPNDNPLRRGVPLNSQAMELIRRTREFYEQ
FT                 EREFVSVHGEPSIPADKVLERTSKTLGLSQRTIIRKGVLLQELQDSEANRV
FT                 EDNPGEENSVFLATPGKEKKQPRPVTNLDLFQTDAIRRHIYGYYSRKEYPT
FT                 VAKLLISLKACDLFSGGKTSLKTVLRSMGFRFKKLNGRRLLLEKPHVVAAR
FT                 SIFLHKIKGSDIHSIVWLDETWVNAGEAVDKCWTDNTPNSSGHQPTGRGAR
FT                 LIVAHAGSSSGFVNDGLLVFRSRKTGDYHEDMDHQRFLQWFKNLLLQFSVP
FT                 TVFVMDNAPYHSVILDKTPTTSDRKETMVQWLLARDIAADMSMTKLLLYSL
FT                 VKQNKPVTPTYVVDEVAREQGHTVIRLPPYHCHFNPIELVWGDVKTYIRKK
FT                 NKSFTITEVERLLLEGLATVDATSWRKKVEHVAKLIKEAQTIDGIINEHEQ
FT                 LMISLDDDDDDDDGFGADSDASDDGELDGIAPLTS"
XX
SQ   Sequence 2196 BP; 633 A; 434 C; 505 G; 620 T; 4 other;
     tagtcgggcc gctgaaacat gtcacttcaa ggtcactcca cgagtgtttt gaagttgcca        60
     gtatgactga aaaacaaatg acgaacgcga gacgctgcgt cttctgaacc aatcacagca       120
     cagctacgaa tgccggttcc gtcgtcgtca ctaccacgtt gccgcgttct atgaaagctt       180
     tgtgtgctcg tgtgctatcg tctgcttttg tatcgtgtgt gattttactg cttcgcgtac       240
     atttttttat ttattaaaaa aatgtcaccg aaacggcgtc ttcaaccaaa cgacaatccg       300
     ttgcgtcgcg gagtgccgtt aaatagccag gcaatggaat taattagaag aacgcgggag       360
     ttctacgaac aagagagaga gtttgtttct gttcacgggg aaccatcaat tccggctgat       420
     aaagtcttag agcgtacctc gaaaactcta ggactgagtc aaagaacgat tataaggaaa       480
     ggtgtgctgc ttcaagaact acaagacagt gaagcaaacc gtgtggaaga taacccgggt       540
     gaagaaaaca gtgtgttttt agctacccca ggcaaggaaa agaagcagcc tcgccctgtt       600
     accaatctcg atttgtttca aackgatgca atccgtcgtc atatttatgg ctattatagc       660
     cggaaagaat atccgactgt agcgaagttg ctaatttcgt taaaagcatg cgatcttttc       720
     tcgggtggaa aaacgtctct gaaaacggtg ttaagaagta tgggcttccg cttcaaaaag       780
     ttaaatggac gaagactgtt acttgaaaag ccgcatgttg ttgcagctag aagtatattc       840
     ttgcataaaa ttaaaggcag tgatatccat tccattgtat ggttagatga aacctgggtc       900
     aacgccggag aagctgttga taaatgctgg acagacaata ctccaaatag cagtggtcat       960
     cagccaacag gaagaggtgc cagattaatt gtggcacatg caggatcttc aagtggattt      1020
     gtgaatgacg gacttttagt cttccgatcc agaaaaacag gtgattacca cgaagatatg      1080
     gaccaccaac gtttcctgca gtggtttaag aatttgttgt tgcagtttag tgtcccaaca      1140
     gtgtttgtaa tggacaatgc accttaccat tcggtcatat tagacaaaac tccgacaact      1200
     agtgaccgga aagaaactat ggtacagtgg ttgctagcga gagacattgc tgcagatatg      1260
     agtatgacaa agctgctgtt gtattcactc gtgaagcaaa ataagcctgt gacgcctacg      1320
     tatgtagtag acgaagttgc aagggaacag ggtcatacgg taattaggct accaccgtat      1380
     cactgccatt tcaaccccat tgaattggtt tggggtgacg tmaagacgta cattaggaag      1440
     aaaaacaagt cttttactat aacggaagtg gaaagacttt tacttgaagg acttgctact      1500
     gttgacgcca cctcgtggag aaagaaggta gagcatgttg ctaaacttat taaagaagcg      1560
     cagactatag acggmataat aaatgaacat gaacaattga tgatttccct cgatgatgat      1620
     gatgatgacg acgacgggtt tggcgctgat tcggatgcca gtgatgatgg agaacttgac      1680
     ggaattgcgc cactgacttc ataaaccggt gagtgtaaat ttatgcagaa ttaattcttt      1740
     cactctgcat cacagaatgc aactgtttct ttatttcgta ttacgattgt tggttgcgtg      1800
     ttctttgtta tgagtagctt tacattattg tacgacattt catktgcatc tattacgtta      1860
     acaattcgga ataacatctc atagacactg tccttaagtt agactgttgt tttatttatt      1920
     tcacggtttc gcatattaac aaatggtatt tctctgtagg tgatttgtct gttgaaataa      1980
     cacattctgc gttatacttc cgtataaatt attatgcgac cgttcctatt cacggtgtta      2040
     ggcgacattt ccagtacata tttcggacgt tctgagctat cagctgtcgc tgtagtcgtc      2100
     tgctgcgtag ctattgcaac ctcgcagtcg cagtatagcc aactacgcgc gaactacgca      2160
     caaactgtca agtgacatgt ttcagcggcc cgacta                                2196
//
ID   Mariner-41_LMi repbase;    DNA;    INV; 3026 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3026
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 35-35 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(62..808,694..1401)
FT                 /product="Mariner-41_LMi_1p"
FT                 /translation="MGPKAADNTRQYTIDARVARIVQSRYCRSATVFLAAG
FT                 EMDRHRENTRYQRVRSDGKVLINNVVQFCKEEKRKGLLIPLERAMERAAAA
FT                 VGKSVRTVHNIVNDVKKARQSGQKIVTPRKKRLRKKTKCLDEFDKCLLKRK
FT                 FLEYYDIKREIPTLRKLYNWVKEEPDINFTGKRTTFWRILKDMGFRLKKCK
FT                 NRRTFLVEREDIVACRARFLRTLRENEKGAKNPSFILTKHGCIHTILSVNV
FT                 GNIVTYQVNTEGKRKRCEKPVVYTDETWVHTHYTVSKCWQHSDVPGVRKNE
FT                 SSGQRAIVVHAGGEMGFIEGAELIYDSRSKSEDFHNEMNSENYIKWLQERL
FT                 IPNIPSGSIVVLDNAPYHCVHESKPPNTSSRKVDIQSWLTKHKIPFGADLT
FT                 RNELLEIVKRFKPEPEYTVDRVLKESGKELTVLRLPPYHCDLNPIELIWNL
FT                 MKQKVASNNVSSVTLSQLKQMTSAAIQSITKDDWKRRVIK"
XX
SQ   Sequence 3026 BP; 953 A; 560 C; 648 G; 865 T; 0 other;
     tacccgttca ctttacaatt gcagacggca gaacgcggaa ctaagctttg tttacgctca        60
     gatggggccg aaggcggccg acaatactcg acagtacacg atcgacgcac gtgtcgcgcg       120
     cattgtacag tcacgttatt gtcgtagtgc gacagtattc ttagcggctg gtgaaatgga       180
     caggcatcgc gaaaatacac gctatcaaag agtacgttcc gatggaaaag tgctaataaa       240
     taatgttgtt cagttctgta aagaagaaaa acgaaaaggc ttgctcatac cgttggaaag       300
     agctatggag agagcagcag cagcggtagg aaaaagtgta agaacagtgc ataatattgt       360
     gaacgatgtt aagaaggcca gacagagtgg tcagaaaatt gtaacaccga ggaagaagag       420
     actgaggaag aaaaccaagt gtcttgacga atttgataag tgcttactca aaagaaagtt       480
     tttagagtat tacgacatta aaagagagat acccaccctt cgaaaacttt ataattgggt       540
     gaaggaggaa ccagatatta atttcacggg aaaacgaacc actttctgga gaattttgaa       600
     ggatatgggg tttcgtttaa aaaaatgtaa aaacagacga acgtttctgg ttgagaggga       660
     ggacattgta gcatgtcgtg cacgttttct tagaacactg agggaaaacg aaaaaggtgc       720
     gaaaaacccg tcgtttatac tgacgaaaca tgggtgcata cacactatac tgtcagtaaa       780
     tgttggcaac atagtgacgt accaggtgtg agaaaaaatg aaagttctgg acaaagagcg       840
     atagtggttc atgcgggagg agaaatgggg ttcattgagg gtgcagagct catctatgat       900
     tccagatcaa agtcggaaga ttttcacaac gaaatgaaca gtgaaaatta cataaaatgg       960
     ttgcaagagc gcctaatacc aaacattcca agtggaagta ttgtggtact agacaatgct      1020
     ccctatcatt gtgttcacga aagtaaaccg cctaacacat cttcacgtaa agtagatata      1080
     caatcatggc tgactaaaca taaaattccg ttcggtgcag atttaacacg caacgagctc      1140
     ttggaaattg taaaacgttt caagcccgag ccagaatata cagtagatag agtactgaaa      1200
     gaatccggta aagaacttac agtgttacgc cttccaccct accattgtga tctgaacccc      1260
     atcgaactta tctggaattt aatgaaacag aaagttgcat cgaacaacgt cagcagtgtt      1320
     accctctccc aacttaagca aatgacttcg gctgcaatac agagcattac gaaagatgac      1380
     tggaaaaggc gtgtgataaa gtgaaaacta ttagggacga atactggcac agagatgcac      1440
     tgatggacga agctattgag agtgtaatta tccagcttca accagacagt gacagtgaaa      1500
     tttcgtcttg tggttctgag gacgtatctg acgaggcaga ttcagagtcg acagagacag      1560
     ctgcttcgga catcagcaac agctccaccg agtcagcaga tgagacagaa ttgtgtgctg      1620
     aagagccagg tgttcagccc ttacatatgg attaaagttt tgtgcctgtt gttatgctgc      1680
     atctcgccac ataatgcttt acatgttaac tatgggatta taaaacacat tttatttccc      1740
     cacacaggct tgtgtaatgg tgtgttaata gcaaatgcag ttttgcgttt gtttggtcat      1800
     attataatct gctttttgaa accacacatt cggtggttga ccattcactt gagtaggact      1860
     tcgttcgcga gtaatcgatg aaaaaagtta cagttttggg caagattctg aatctttaca      1920
     acagaacgtc tgttttagta gctagcagaa cgcagtggat atctcgtctg cctaatgtgc      1980
     aagaggtgca gatcttatta tgtgcttcaa tgttctttta ttttcatatc tttatcgaaa      2040
     tgactttgat cacaattttt attgattgat tgctttaaat atgatttttt attcatattc      2100
     cttttttctc attattgaaa aacctttttg tggtaaaatt ttagaattgc ccacacattt      2160
     cgaaatgaaa aaattctgag gtaggtggag ggattagaac ccgcacactt tagatcaaga      2220
     agcagacacg ctatccacta cgctacagcg gcttccgtga catactctct ataattgatt      2280
     attcgtaaac aagcacttca ccagctatct gaatctgaat gtcttttctg ttttaaggtt      2340
     ctcgagattt gtgcaaaatt tcgaatgttt tttcgtcgct tactcataaa ggagggctca      2400
     ccagggtgaa tgaccaactt gcactagcga ataataatgg tttcaaaacg tcgatcctcc      2460
     cagtagggac ttcttcttcc tagtttttag atcatgcacc gaaatttata tttgatttta      2520
     atttattacg ctttactgta gaataatgta ttaacagcaa atgtatttta tcagctacac      2580
     gaccgactct ttgttacatc gtaaaacaac agttttaatt tcgtgctatt ttttgtagaa      2640
     gaatgtatta aaagcaaatg tattacgcat cgcttcagtt gttcaatagt aacaatgcag      2700
     ttctttttca tttcatacgc tttcctgcag aagaacacat taaaagcgaa tgtaacgtcg      2760
     ttttgtaaaa gcactgctgt tttgtctgac cgtaaaaaag cacagtttta tattcttatt      2820
     tttcatttgg attgtttatc tgaacaagaa tgtgttaaca gaatgtacat ttgttttatc      2880
     tgcttcagct gaggaaccac gttaccggta cattgtaatt gagcgcagct ataccgctcg      2940
     tgcttcattc gaacaaccaa tagcagaaca cgtcaacagt tcgcagcgcc ctcagctcaa      3000
     atcggcaatt gtaaagtgaa cgggta                                           3026
//
ID   Mariner-42_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-42_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 881-881 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1209
FT                 /product="Mariner-42_HSal_1p"
FT                 /translation="MECKNDHFRHILLFYFRKGKKAAEAHKEICEVYGVGC
FT                 ITERTCQNWFKKFRSGDFSLKDDQRSGRPSEVDEDKMKAIIESNRHITVRE
FT                 IAKRLNVSHRTIENHIRRLGLVKKLDIWVPHELKEIHLTQRINICDTHFKR
FT                 NAIDPFLKRIITGDEKWIVYNNINRKRSWSKHDEPAQTVSKAELHQKKIML
FT                 SIWWDYKGVVYFEMLPSNQTINSDVYCQQLMKLEEAIKEKRPELANRKGIV
FT                 FHHDNARPHTSLATRTKLLELGWEVMSHPPYSPDLAPSDYHLFRSLQNFLN
FT                 GKNFNNNDDLKSHLVEFFADKDQQFYERGIMKLPERWKKVIEQDGKYLTD"
XX
SQ   Sequence 1287 BP; 429 A; 220 C; 257 G; 381 T; 0 other;
     ttgggttggc aagaaagtaa tttcggtttg cgccaataga tagcgttatg tttgtgtcgt        60
     tattcttctg tcaatgttat aatttttttc ttttcagatt tggtagttga cactcttagg       120
     ttactataga aacaaattcc gtgtaatttt gtttacaact gttggtttac ggtcaatttt       180
     aacatggagt gcaaaaatga tcattttcga catattttac ttttttattt tcgtaaaggc       240
     aagaaagcgg ctgaggctca caaagagata tgtgaagttt atggtgttgg ttgcataaca       300
     gaacgcacgt gtcagaattg gtttaaaaaa tttcgttctg gagatttttc acttaaagat       360
     gaccaacgtt ctggccgacc ttctgaagtt gatgaagaca aaatgaaagc cataattgaa       420
     tcaaatcgtc atataactgt gcgagagatt gcaaaaaggt taaatgtgtc acacagaaca       480
     attgaaaatc acataagacg tcttggactc gttaagaagc tggatatttg ggttccgcac       540
     gaattgaaag aaattcactt aacacaacgg atcaatattt gcgatacgca tttcaaacgt       600
     aatgcaatcg atcctttttt gaagcgaatt atcactggtg atgaaaaatg gatcgtctac       660
     aacaacatta atcgaaaaag atcatggtcc aagcatgatg aaccggcaca aaccgtatcg       720
     aaagctgaat tgcatcaaaa aaagatcatg ctgtcaattt ggtgggatta caaaggtgtt       780
     gtgtattttg agatgcttcc aagcaaccaa acgatcaact cagatgttta ctgccaacaa       840
     cttatgaaat tggaggaagc aatcaaagag aaaaggccag aattggcaaa tcgtaaagga       900
     atcgtgttcc accacgacaa tgcgaggccc catacatctt tagcaacacg tacgaaatta       960
     ttggagcttg gttgggaagt gatgtcgcat cctccatata gccccgacct tgcaccatcg      1020
     gattatcatt tatttcgaag tttacaaaac tttttaaacg gtaaaaattt caacaacaac      1080
     gatgatctca aatcgcactt ggttgagttt tttgctgata aggaccagca gttctatgag      1140
     cgcggaatca tgaagctacc agaaagatgg aaaaaggtca tcgaacagga tggaaaatat      1200
     ttgaccgatt aaagttcatt ttttgtatag aaaaaattga gttttatttc acactaaaaa      1260
     accgaaatta ctttcttgcc aacccaa                                          1287
//
ID   Mariner-42_LMi repbase;    DNA;    INV; 1358 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1358
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 36-36 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1227
FT                 /product="Mariner-42_LMi_1p"
FT                 /translation="MATAQQKAFCVIEYGRSESTTVVQRAFRTKYGVKPPD
FT                 RWCIKRWYKQFTENGCLCKGKSSGRPRTSDENVARIQQAFVRSPGKSTRRA
FT                 SRELQIPQSTVWRVLRKRLVMKPYRLKLVQALSAADKIKRIDFCDFILAQM
FT                 ETDESFVSKIVFSDEATFHTNGKVNRHNVCIWGTENPRETTQYERDSPKVN
FT                 VFCAISANKVFGPFFFEGATVTGLQYLEMLENWLFPQLEQEAQQFIFQQDG
FT                 APPHWHLSVRNYLNVNYPRRWIGRQAARDRALHHWPPRSPDLTPCDFFLWG
FT                 YVKDMVFRPPLPATIDDLKREITAAIQTVTPDMLQRVWNELEYRVDIARVS
FT                 GGGHIEHL"
XX
SQ   Sequence 1358 BP; 391 A; 268 C; 317 G; 382 T; 0 other;
     cagggtgatt caaaaagaat accacaactt taggaattta aaactctgca acgacaaaag        60
     gcagagctaa gcactatctg tcggcgaatt aagggagcta taaagtttca tttagttgta       120
     catttgttcg cttgaggcgc tgttgactag gcgtcagcgt cagttgatgc taagatggcg       180
     accgctcaac agaaagcttt ttgtgttatt gagtacggca gaagtgaatc gacgacagtt       240
     gttcagcgtg catttcgaac gaagtatggt gttaaacctc ctgataggtg gtgtattaaa       300
     cgttggtata aacagtttac agagaatggg tgtttgtgca aagggaaaag ttctggacgg       360
     ccgagaacga gtgatgaaaa tgtagcacgc atccagcaag catttgttcg cagcccagga       420
     aaatcgactc gcagagctag cagagagctg caaattccac aatcaactgt atggagagtc       480
     ctacgaaaaa ggttagttat gaaaccttat cgtctgaaat tggttcaagc actgtctgca       540
     gctgataaga ttaaaagaat cgatttctgt gattttatcc ttgctcaaat ggaaacagat       600
     gaatctttcg tttcaaagat tgtgtttagt gatgaagcaa ctttccacac taacgggaaa       660
     gtcaaccgtc acaatgtctg tatatggggc actgagaatc cgcgggaaac aactcagtat       720
     gaacgtgact cgcctaaggt gaacgttttc tgtgccattt cagccaataa agtttttggt       780
     ccctttttct tcgaaggtgc tactgtaact ggactacagt atctggagat gttagagaat       840
     tggctgttcc ctcagctcga acaagaagca caacaattca tatttcagca ggatggagcg       900
     ccaccacatt ggcacttatc tgtccgtaac tacctgaacg tcaactaccc gaggcgatgg       960
     atcggccgcc aggcagcccg tgacagagca cttcatcact ggcctccaag aagccctgat      1020
     cttaccccct gcgatttttt cttatggggg tatgttaagg atatggtgtt tcggccacct      1080
     ctcccagcca ccattgatga tttgaaacga gaaataacag cagctatcca aactgttacg      1140
     cctgatatgc tacagagagt gtggaacgag ttggagtatc gggttgatat tgctcgagtg      1200
     tctggagggg gccatattga acatctctga acttgttttt gagtgaaaaa aaaccttttt      1260
     aaatactctt tgtaatgatg tataacagaa ggttatatta tgtttctttc attaaataca      1320
     catttttaaa gttgtggtat tctttttgaa tcaccctg                              1358
//
ID   Mariner-43_HSal repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-43_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 882-882 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1208
FT                 /product="Mariner-43_HSal_1p"
FT                 /translation="MENEKVHLRHVMLYEFRKGVSVGTAQKNIQSVYLDRA
FT                 PALRTVKKWFGRFRNGDFNLEDQPRSGRPSGIDDDIVCALVEENPRITTEE
FT                 IAERLKIDNSTAFRHLKKLGYVSKLDTWVPHLLTERNKLNRMNVAISLLAR
FT                 NKKEPFLDRMVTGDEKWILYNNVQRKRTWKKAAEGAEPVAKAGLHPLKVLL
FT                 CVWWDCRGIIHFELLRRGETITADKYCEQLTRLDAAIREKRPVLANRKGII
FT                 FHHDNARPHVAQQTLRKLQELQWEILQHPPYSPDIAPSDFHLFRSLQNSLN
FT                 GENLKSEEAVENHLTNFFQGKPSSFFKNGIDKLVDRWKTIVEKNGDYIID"
XX
SQ   Sequence 1286 BP; 375 A; 261 C; 310 G; 340 T; 0 other;
     ttggatgatt gcataagttc gtgcccgatt ttcataaatg gcgttaactt actgcatggc        60
     ggagctccgg tgtttttgtt tggttatgtt gcatgcactg aataggtgac agtgtcttgt       120
     gtcactttag cgtcaggcat cgttcagata agtcgatttg tgcgtaagag aaatttttaa       180
     aaatggagaa cgaaaaggtg catttgcggc atgtaatgct atacgaattt cggaaaggcg       240
     tgagtgttgg gactgcacaa aaaaacattc agagcgttta tttggaccgt gctcctgctc       300
     tccggacagt taaaaagtgg tttggcagat ttcgaaatgg tgatttcaac ttggaagatc       360
     aaccccgctc tggacggcct tctggcattg atgacgacat tgtgtgtgcc ttagtggaag       420
     aaaacccaag gattacaact gaggagattg ctgagaggct gaaaatcgat aattcgaccg       480
     cgtttcgcca tttaaaaaag cttggatacg tttccaagct cgatacatgg gtgccgcatc       540
     tcttgactga aaggaataag ctgaaccgca tgaatgtggc catttctctc ctcgcacgta       600
     acaaaaaaga gccttttttg gatcgaatgg taacaggcga tgagaagtgg attctgtaca       660
     acaacgtaca gcgaaagagg acctggaaaa aagcagctga aggtgcagaa cccgtcgcaa       720
     aagctggcct gcatccactg aaggtgttgc tgtgtgtttg gtgggattgc aggggaatta       780
     ttcacttcga gctactccga cgcggcgaaa caatcacggc ggacaagtac tgtgagcaac       840
     tcactagact cgatgcggct attcgagaaa aacgtccggt tttggccaat cggaaaggca       900
     tcatcttcca ccacgacaat gctagaccgc acgtcgccca acagacgctg cgaaaactgc       960
     aggagttgca atgggaaatt ctccagcacc caccatattc tccagatatt gcgccttcag      1020
     attttcatct gttccggtct ttgcagaata gtttgaatgg cgaaaatctt aagtccgagg      1080
     aagctgtcga aaaccacctc acgaactttt ttcaaggaaa accaagctct ttcttcaaaa      1140
     atggaatcga caagcttgta gatcgttgga aaacaattgt agagaagaat ggagactata      1200
     taattgatta ataaaactgt attctttaaa atttaaccta ttgaagttta tctttaaatc      1260
     gggcacgaac ttatgcaatc atccaa                                           1286
//
ID   Mariner-43_LMi repbase;    DNA;    INV; 1256 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-43_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1256
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 37-37 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1077
FT                 /product="Mariner-43_LMi_1p"
FT                 /translation="MIGEMRDLSDFQRGQLDGAQLVGASVTKTAALFNVSL
FT                 ATVSSVMTAYTKQGKTSLAKRNSGRNPKLTDNDRRALRTIVARQHKTTTAK
FT                 ATAKLSTHLSNTVSIKTVRLELNIHGRAAVAKPLITEANAKLRRKWCHDHK
FT                 TWTLDDWKYVVWSDESSFTLLPTNNRVYVSKTPKEAYDTACLLPTVKHGGG
FT                 SVMIWASISWYSTVSIITLTGRITVNEYLTILDNKLLTMTNILLTNTAIFQ
FT                 NDNAPTHTAKKVQACFVQHQKIIKHLPWTAKSPCLNIIEPLWGVLEQRVRT
FT                 RFTAPTSLK"
XX
SQ   Sequence 1256 BP; 393 A; 279 C; 272 G; 312 T; 0 other;
     ctggggtgga caaaataata tgaacaccat gcagtatact acatcttgtt gcaagttggc        60
     accactgcgt acgtgttaac actgagacgc gaccgcagtg cacaattgac gtacgaagtc       120
     ttggacgtta ccttgcagta tattatacgt tttgttctgc gacggtcaac acaaatgatc       180
     ggtgaaatgc gtgatctctc agacttccaa agaggccaac tcgatggtgc gcagttagtg       240
     ggagcatctg tgacgaaaac ggctgcactg tttaacgttt cactagcgac agtatcctcg       300
     gtaatgacag cgtacacaaa acaaggtaaa acatcactgg cgaagaggaa tagtgggcga       360
     aacccgaagt taactgacaa cgaccgacga gcattaagaa cgattgtggc cagacaacat       420
     aaaactacca cggcaaaagc gactgcaaaa ctcagcactc acttgagtaa tactgtttcg       480
     ataaaaacag tacggctgga gcttaacatt catggaaggg ctgcagttgc taaaccctta       540
     ataacggaag ccaacgcaaa gctgcgaagg aagtggtgcc acgatcataa aacctggaca       600
     cttgatgact ggaagtatgt ggtatggtcc gatgaatcat cgtttacatt gcttcctaca       660
     aacaaccggg tttatgtatc gaaaacccca aaagaagctt acgatacggc atgcctgctt       720
     cctacagtca agcatggggg aggttccgtc atgatttggg catctatatc gtggtattca       780
     actgtttcta tcattaccct cactggtcgg ataactgtga atgaatatct caccatcctc       840
     gacaacaaac tgcttactat gactaacata ttgctaacaa acactgccat attccaaaat       900
     gataatgcac ccacacacac agccaaaaag gttcaggcgt gctttgtaca gcatcagaaa       960
     attatcaaac atctcccctg gacagcaaaa tcgccatgtc tcaacataat tgaaccgtta      1020
     tggggagttt tagagcagag agtgaggacc agatttacag ctccaacatc gttgaagtaa      1080
     ttggcggatg ttttggtaca agaatggata acattctgtt ggaaactata aagacacttt      1140
     acgaatctgt tcctcgaaga gttgcagctg ttctcaaagc caatggtggc caactcctta      1200
     ctaataaata aatattgtgt ctatgttagg tgttcatatt attttgtcca ccccag          1256
//
ID   Mariner-44N1_LMi repbase;    DNA;    INV; 1258 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 20.01, Created)
DT   16-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Mariner-44N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1258
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 38-38 (2015).
XX
DR   [1] (Consensus)
XX
CC   >83% identical to consensus.
XX
SQ   Sequence 1258 BP; 338 A; 263 C; 248 G; 409 T; 0 other;
     gtctgattaa aattacttgc tagttgacag ttcacgcgct ggagctgctt tcctccaatc        60
     agagcgctca acgtcacgcc cgaaccgttc cccgttgcca aactgccaca acaactggtc       120
     agttcaattc catttcctta tctggctctc tttcttgatt tgctttgttg ccgattcata       180
     ggtctgccct ttttatttcg catttcatca cttaatgata accatacaaa aaacaagaca       240
     cggacaacgg tgttaacgaa atacgtactc atgcacagca ctaagcacac gctactgaat       300
     cctttcgtac aagtgattta atgtcacata tacaagtatt atatcacaga tatcagctta       360
     catttagaga agcttcgtat gatttacgtg aaaacgagct ctccgaaggc tacaattcag       420
     ggttgttact gggtgtgtac tgtgacttag aagtaataag aacgtggctg cgtagcacag       480
     tggtaaagtc gtaggttcga accctcatat gcgattattt taatttctaa atcaaaatta       540
     ctttgattgt tgtttttatt aacttaattg aattgtttaa gttctaatac cttgttacgt       600
     atgtttcata atagtattga cttttttatt cgctcttatt tttcatccta tgattctttt       660
     tttcgattgg aatctgcttg tgtcgttaat aacctgtaat taagtgccaa gcaggactgc       720
     tgattggttc gtaacacggc agctcgtgta accactagcc agtgtgagga tattttcagg       780
     taggctaacc aatgatagcg agaaattaca gtttgctttt agcgctgtat ctgaaatttt       840
     tctgtttgag tttgctcata gaggtaagct ttattcgccg tgaatgaaga aatcatgatt       900
     ttagttctgc tggagatggt tgaacgccgt tttgccggat acatagtaca tcacgtgtgg       960
     ttaggttaca acatgggatt aaattgagaa ctacaaaacg cgtcttctgc tgcagttcag      1020
     tcactgatca cttaaaatta gctgtcgaca gagcttttcg cattgccgcc attaactctt      1080
     ggcggcctct tacaacactg ccccacgtta taaaataata ttaacagtat taacagcatt      1140
     tttgaagtga cccaccgtgt ttgtgcgtcg cctacagccg agcggtagcc ggctgcctat      1200
     gtggcaacac tgtagcgcca cgtgacaaac gtcaactagc aagtaatttt aatcggac        1258
//
ID   Mariner-44_HSal repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-44_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1281
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 883-883 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1281 BP; 416 A; 254 C; 274 G; 337 T; 0 other;
     ttaggtgttt cggttaattt ccgctgttcg catttagatg gctccagctg caaatgtagt        60
     gaactgtgac agctggaact catgctatat taaaggttag acgtttttca atagaattca       120
     gtccaccaag gtttactttt gcaagcagtg atattgtttt taaatcaatt caaaatggaa       180
     cgcaataagt tttgtttttt cgatatgttc tcctccacta ctttgatata aagaaaactg       240
     cagctgaagc acatcgaata tttagtggaa acttatggtg actctgctcc atcagaaaca       300
     acatgtagag attggtttcg acgattcaaa agtggtgatt ttgatgtgaa agacaaggaa       360
     cgtccaggtc agccaaaaaa gtttgaagac gccgaactgc aagcattatt ggaccaaaat       420
     caatctcaaa cactcaagga attggctgag gcactaaatg ttgcagtttc gacagtttct       480
     gaccgtttac atgcaatggg aaaaattcaa aaggaaggaa aatgggtgcc acatgaactg       540
     accgaagcga acatgctgaa ccgtgtatcc atcgccactg ctctgattgc caggcagaaa       600
     aaaagagttt tttgtaccgg attgtcactg gtgatgaaaa gtggatccat tatgacaatc       660
     ctaaacgcaa aaaatcatgg gtagacccag gccaaccatc cacatcggcg ccaaaacgca       720
     atattcatgg tcataagaca ttgctctgta tttggtggga tcaagaaggt gttgtgtatt       780
     atgagctctt aaaaccgaat gaaactgtta cggctgaccg gtaccgacaa caattataca       840
     gtttgaagct agcgttggat caaaaacgac cacaaatcgc acacaacaaa agaaaagtga       900
     ttctgttgca cgacaatgcc cggccacatg ttgcaaaagt cgtcaaggaa acgctgacag       960
     agctcgaatg ggaggttctt ccgcatgccg cgtattctcc agacctggcc ccgtctgatt      1020
     accacttgtt ccgttcaatg cagcatggcc ttcaagacac acgctttcga aattacgaag      1080
     aagtccgaaa gtgggtggat gaatggattg cttcaaaacc tgagtcgttc tatcgccgcg      1140
     gaattcatct cttaccagaa agatgggaaa aagtaataca aaacgatgga aaatattttg      1200
     attgattaat caattcattt tgtaattgaa ataaatgtgt ttttcaagca aaaaacagcg      1260
     gaaattaacc gaaacaccta a                                                1281
//
ID   Mariner-44_LMi repbase;    DNA;    INV; 2858 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-44_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2858
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 39-39 (2015).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(230..742,675..932,936..1646)
FT                 /product="Mariner-44_LMi_1p"
FT                 /translation="MSGEVRKKRGRPRLRDEKTSAKKSGQGIAFKGQSRQL
FT                 VCNVREYFEREADNGGPLLPFSKVVARTAAAIKVSEATVMRIGKEKYEKEI
FT                 SEAGPSCLDTPGKKRHSKTVTNLDPFAQEAIRRHIYSYYHNRNRPTLDRLQ
FT                 TTLVRPNFLKAANLVANSSAESRFQIQEYFRSRQQISLRIVLQNLGFKYKN
FT                 ISGRKMLLEREDIAAWRCRFLREVKDINFEDIVWIDETWVNAGHTVTKGWS
FT                 DDKGEGIALPTAKAEEFFCMPVLPWFIPGCQLLFRSKKTSEYHEEMNHETF
FT                 LNWFENTLLPSLENPSVIILDNASYHSVLKDKAPTMSSRKEDIIQWLKQHK
FT                 VTVDDTLKKVELMELVSRNKPQFPTYIIDEVAYKYGHRVIRLPPYHCHFNA
FT                 IELIWAQVKGYVARENKKFTVSEVEKLTIQGLESVTEMDWRAVVMHTKRVI
FT                 DEAWKNEGLLEDSVTELIITFSGSSTSETSSDSEMSGIYPLSDDATACS"
XX
SQ   Sequence 2858 BP; 849 A; 548 C; 619 G; 842 T; 0 other;
     ctctgattaa aattacttgc tagttgacag ttcacgggct ggagctacct tcctccaatc        60
     agagcgctca acgtcacgcc cagactgctc cctgttgcca agctgccgca acaggtggac       120
     agctcgcgtc cattgtttgg ctagtgctgt gtagaagcgt gcgtcttagg ttaggaaccg       180
     ttttcgttgc tgtcgttgtg cgtgtgtgtt gttatttggt gtcgtcgtaa tgtctggtga       240
     agtgcggaag aagaggggca ggcccagact tcgagatgaa aagacatcag ctaagaaaag       300
     cgggcaagga attgcgttta aaggacaatc gcgacaactc gtgtgcaatg tgcgagaata       360
     ctttgagagg gaggcggaca atgggggacc tctcttaccg ttttccaaag tagtcgcgcg       420
     aaccgcagct gcgattaagg ttagtgaagc tactgtaatg cgcattggca aagaaaagta       480
     tgaaaaagaa ataagtgaag caggaccctc ttgccttgat acgccaggga agaagagaca       540
     ttcaaaaact gtaacaaatt tagatccttt cgcacaagaa gctattcgtc gtcacattta       600
     cagctattac cataacagaa atcggcctac attagatagg cttcaaacta cattggtgag       660
     gccgaacttt ttgaaggcag caaatctcgt tgcgaatagt tctgcagaat ctcggtttca       720
     aatacaagaa tatttcaggt cgtaaaatgt tgttggaacg agaagacata gccgcatggc       780
     ggtgcagatt tttgcgtgaa gtgaaagaca ttaatttcga ggacattgtg tggatagatg       840
     aaacatgggt gaatgcaggt catacagtta cgaaaggttg gagtgacgac aaaggggaag       900
     gtatagcact ccctaccgca aaggcggaag aataattctt ttgcatgccg gtactgccgt       960
     ggtttattcc cggctgtcaa ctgttattca gatcaaagaa aacgtctgag taccatgaag      1020
     aaatgaatca tgaaacattt cttaattggt tcgaaaatac attgctacca agtttagaaa      1080
     atccctcagt aattattctt gataatgctt cataccattc agttttgaag gataaggctc      1140
     caaccatgtc atctcgaaag gaagacatta ttcagtggtt aaaacaacat aaagttactg      1200
     tcgacgatac actgaaaaaa gtagaattga tggaactcgt atcacgtaat aaaccacaat      1260
     ttccaactta cattatcgac gaagtggctt ataaatatgg acacagagtg ataagacttc      1320
     cgccatacca ctgccacttt aatgcgattg aacttatttg ggctcaagtg aaaggatatg      1380
     ttgctcgtga aaataaaaag tttactgtga gtgaagtcga aaaactaact attcagggcc      1440
     tggaaagtgt caccgaaatg gactggaggg ctgttgtgat gcatacaaag cgagtaatag      1500
     atgaagcatg gaaaaatgaa ggtcttctgg aagacagtgt gacggaactt atcattactt      1560
     tcagcggttc atccacctcg gaaacttcta gtgattcgga aatgagtggt atctaccctc      1620
     tttccgatga tgcaacagct tgcagttagc agtcggtgaa ggtatgtaca cacagaaaat      1680
     ttccttaatt ttaaacggtg agcttcgttt tgcaatgtat gtgtcgtgac tgtgtcgcct      1740
     ataagctgta acgcgtcagc tcattgagga cagtttcatg taactaatta aggcgagaaa      1800
     ttatagtttg tttttagcat tgacttctgt ttcgaatttg ctcgtagatg ttagttttaa      1860
     tcgtcgagta ttgacatgtt gacagcattc tacattcaga tgttgacaaa gcttcatgaa      1920
     ccagccacac agcgttagtg tgttcactat ttcacttaat ctctaagtat aacgactgtc      1980
     agattcagtt tttcaagggg tcttttaact ctggacagtt ttaataaaac tatggaacag      2040
     tggtcgtatt aacaatttac agtggtgaac ggcgtattca ctatggcatg tctttcttta      2100
     ttaatttgga aacatggaag tccctgcagt atatatgtaa atattcagtg actgctaaat      2160
     atgaatcagc gttatcagat tacgaaaaaa tgtaaaaata tatattttac gtttgttacc      2220
     tgactgtatc gttgcagccc aactataatt acttcactgg ttttaataac agttttgcta      2280
     attgtgttgg ctgatattgc agcactaaac tgcctgtcgc caataatctc agttacgcta      2340
     cacttaatct ctcatcccat taaagatttt tgtttatcgc tcatcccatt aacgaatttt      2400
     gtttatctct cgtatatcac atcaacattt tagtcagtaa ataacacaaa acaactctgt      2460
     tcttttacat ccattcacag acgtattttt ttcatccatt ctcagaagta ttccgtcttt      2520
     ttcgttgtat tcgttacagc gaaaataatt gcggtacacg ctttcttttt ggtgttcgac      2580
     atcatagcct tgtaaaatcg cattgtcaac agtaaatgtt aacagtatta ttgatgtgga      2640
     caatgttaac aatatttaac tgtgaaggtc atctcagtac atttaaagct tgactaatta      2700
     gtattgtcaa caactaccgg tactgaacgt gtgcaaatcg ctaacagtac tcggcgcagt      2760
     gccgcctgta cggagcgcca gctctcagcc ggcagctgtc gtggcaacac tgtagccgca      2820
     gctgacaaac gtcaacttgc aagtaatttt aatcggac                              2858
//
ID   Mariner-45_HSal repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-45_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 884-884 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1209
FT                 /product="Mariner-45_HSal_1p"
FT                 /translation="MSELSAKLRYILQFYFDKGANAAQAREEICAVYGQDT
FT                 LSKATAKRWFSRFRSGNFDVQDAPRSGRPITEKVDDILAKVEQDRHVSSHD
FT                 IANDLNIHHQTVLNHLEKAGYKKKLDVWVPHDLTQKNLLDRISICESLLKR
FT                 NEIEPFLKRLITSDEKWITYDNNVRKRSWSKRGEAPQSVAKPTLTPRKVML
FT                 CVWWDWKGIVHHELLPPGRTIDSDLYCRQLARLHLAIQKKRPELVNRKGVV
FT                 YHADNARPHTSLTTRQKLRELGWEVLMHPPYSPDLAPSDYHLFRSLQNSLN
FT                 GVKLVSKEACENHVSQFFDQKPQKFYSDGIMVLPEKWQKVIEQNGAYVVS"
XX
SQ   Sequence 1286 BP; 394 A; 270 C; 305 G; 317 T; 0 other;
     tcaggttgtc taaaaagtat tgagcctttt gcgcacgaga tagcgttagt gtcccaaatc        60
     tcagggtata tgagtcgcag caggtcaggc ctaacgtcat ttgacagctg acagttgaag       120
     ctagtagacg tacaaaaagt gttggaattc ttataatcag acgtaaggta ttgcgccgtg       180
     aagatgagtg aactttccgc aaaactgcgc tacattttac aattttattt cgataaaggc       240
     gcaaatgctg cgcaggcccg tgaagaaatt tgtgctgttt atgggcaaga tacgttatca       300
     aaagcaacag ccaaaagatg gttcagtcgc tttcgttctg gaaatttcga tgtccaagat       360
     gctcctcgca gtgggcgacc aatcacagaa aaagtggatg atattctggc aaaagtcgag       420
     caagaccggc atgtaagcag tcatgacatc gccaatgacc taaacatcca tcaccaaaca       480
     gtgttaaacc atttggagaa agctggctac aaaaagaagc tcgatgtttg ggtgccacat       540
     gatctgactc aaaaaaattt actcgatcga atttctatct gcgaatctct actgaaacgt       600
     aacgaaatcg agccatttct gaagcggttg atcacgagtg atgaaaagtg gataacctac       660
     gacaacaatg tgcgaaaaag atcgtggtcg aagcgaggag aagctccaca gtctgtggca       720
     aagcccacac tgacgcccag gaaggttatg ctgtgtgttt ggtgggattg gaagggcatc       780
     gtgcatcacg agctgctgcc gccaggcaga acgatagact cggacctgta ctgtcgacaa       840
     ttagcgcgat tgcacctagc aattcaaaag aaacggccgg aactggtcaa cagaaagggt       900
     gtcgtatacc acgctgacaa cgccagaccg catacatctt taacgacccg tcagaaattg       960
     agagaacttg gctgggaggt tttaatgcat ccaccgtata gcccggacct ggcaccgtca      1020
     gactatcatt tgtttcggtc tctgcagaac tccttgaatg gtgttaagtt agtttcaaaa      1080
     gaggcctgtg aaaaccacgt gtcacaattt tttgaccaga aaccacagaa gttctatagc      1140
     gacgggatta tggtgttgcc ggaaaaatgg cagaaggtca tcgaacaaaa tggtgcatat      1200
     gtggtttcat aatgttattt tcaaataaca ataaatgtat tctcaatttt gacctccaaa      1260
     ggctcaatac tttttagaca acctaa                                           1286
//
ID   Mariner-45_LMi repbase;    DNA;    INV; 1695 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-45_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1695
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 40-40 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(330..806,707..1384)
FT                 /product="Mariner-45_LMi_1p"
FT                 /translation="MGLTREQKIEIILISGERSYRTIAADYNRRHPDREPV
FT                 SHSTVAHVITKFRETGSVQDRARSGRPRTATNEETATAVVASFVKSPKRST
FT                 RRVALACGISQTSVVRILRTNKWHPYKLQMQHKLNEDDPAGWSSACGLLNN
FT                 TNWILRLPRAYCSATRRISLPCWLEFCLWATEQHELDPSFAKGILFSDEAY
FT                 FTLNGEVNRHNCRYWSDANPNWVAPIGEHSPAKVMVWCGIWDTRIIGPFFI
FT                 YNTLTAPQYLMLLQDLVFPSTLNADGIFPSYFQHDGAPPHYGIGVREWLDE
FT                 QLPGKWIGRRGPVEWPPRSPDLTPLDFYLWGHLKQIVYAESIRDLRHLEER
FT                 IQHACDQISGDTLLRVQSEWLRRLQLCIARDGQHVEHVQHVL"
XX
SQ   Sequence 1695 BP; 460 A; 392 C; 405 G; 438 T; 0 other;
     cagggcgagt caaaagtcct tggacacctt cataagttgg aagattaaag ggaaaattga        60
     aaagtgatga tgggaacaga ggtttgatgt ggggccgcaa cttttggagt gaatgtcatt       120
     catggccgcc atcttgaaat ccgccatttt ggattcaagt cattttttaa atgggaaggg       180
     ggtgtatgac acatcaaata acactcgctt gagctcagga atttagtggt gtaatttgtt       240
     tttgtctatc ttgtacagtt tagaagttat taatgttcaa agttaccttg atactgactc       300
     atgtctctct ttgttccagg tgatctaaaa tgggtctgac acgtgaacag aagatcgaaa       360
     tcatccttat atcaggggaa cgcagctacc gaacaatagc agctgactac aacagacggc       420
     acccagacag agaaccggta tcgcacagca cggtggctca cgtgatcacc aaattccggg       480
     agacgggctc tgttcaagat agggcacgta gtgggcgacc aaggactgcc accaatgagg       540
     aaactgcaac tgcggttgtt gcgtcgtttg tgaaaagtcc taaacgaagt acccgtcgtg       600
     tggccctagc atgtggaata agccaaacct ccgttgtccg gatattgcgc accaataagt       660
     ggcatcctta caagctgcag atgcaacata aacttaacga ggatgaccct gctggttgga       720
     gttctgcctg tgggctactg aacaacacga actggatcct tcgtttgcca agggcatact       780
     gttcagcgac gaggcgtatt tcactttgaa cggggaggtt aatcgacata attgtcgata       840
     ctggagtgac gcaaatccga actgggttgc cccaattgga gaacatagtc cagcgaaggt       900
     gatggtgtgg tgtggcatat gggacacccg catcattggg ccatttttca tttacaacac       960
     cttaactgca ccacagtatc tgatgctgct gcaggacctt gtgttccctt ccacactgaa      1020
     cgctgacggc attttcccat cttattttca gcacgatgga gcccctccac actatggcat      1080
     tggtgtccgt gaatggttgg atgaacaact gccagggaag tggattggtc gccgtggtcc      1140
     cgtggagtgg ccgcccagat cccctgactt aacgcccctt gatttttatc tatggggaca      1200
     ccttaagcag atagtgtatg ctgagagcat ccgtgatttg agacacctgg aggaacgcat      1260
     acaacacgcc tgtgaccaaa tttcaggaga cactctcctc cgtgtgcagt cagagtggtt      1320
     gcggcgacta cagttgtgca ttgcacggga tggacaacac gtagaacatg tacaacatgt      1380
     gttgtagcag tcggtatgaa ggtaatttcc caactttgaa cattaataac ttctaaactg      1440
     tacaagatag acaaaaacaa attacaccac taaattcctg agctcaagcg agtgttattt      1500
     gatgtgtcat acaccccttc ccatttacaa aaaacaacat gaatccaaaa tggcggattt      1560
     caagatggcg gccatgaatg acattcactc caaaagttgc ggccccacat caaacctctg      1620
     ttcccatcat cctttccaat tttcccttca ctcttccaac ttatgaaggt gttcaaggac      1680
     ttttgactcg ccctg                                                       1695
//
ID   Mariner-46_HSal repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-46_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 885-885 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           184..1206
FT                 /product="Mariner-46_HSal_1p"
FT                 /translation="MEVKKEKIRYILQYHYDQREKAEQAAKKICAVYGPNT
FT                 VSNATAKRWFQRFRSGNMDVEDETRSGRPIVENVDKIMEIVESDRHASTYS
FT                 IAQELKISQKTVWNHLHKAGLKKKLDVWVPHELTQKNLLDRIHACDSLLKR
FT                 NEIDPFLKRMVTGDEKWVTYENNRRKRSWSKRGEPVQTIAKPGLTAKKVLL
FT                 CVWWDWKGIIHYELLPSGQSLNSDLHCQQLTRLKQAIDEKRPELANRKGVV
FT                 FHQDNARPHTSLTTRQKLRELGWEVISHPPYSPDLAPSDYHLFKHLQNFLD
FT                 GTKLASREACENELVKFFTNRDEDFFNRGIMKLPSKWTKVIEQNGAYLI"
XX
SQ   Sequence 1286 BP; 391 A; 270 C; 312 G; 313 T; 0 other;
     ttgggttaag taaaaagttt tgagcgtttt ccgctagatg gctttagtga ggtcatatct        60
     cacgatgtat acgtcgcatc tggtcattct atactgcgac ttaaaggtga cataacgctt       120
     taaaaaaagt tctttgacag ttttgtgttt ggtgaagcca gttgtgtgtt agagcgttcc       180
     aaaatggagg taaaaaaaga gaaaattcga tacattcttc agtaccacta cgaccaaagg       240
     gaaaaagcgg agcaggcggc caaaaaaatt tgtgctgttt atggacccaa tacagtatcg       300
     aatgcaacag caaagcggtg gttccaacga ttccgttctg gtaatatgga cgtcgaagat       360
     gagacacgct ctggtaggcc aatcgtcgaa aatgtcgata aaatcatgga aatcgtcgag       420
     tcggaccggc atgcgagcac ttattccatt gcccaggaac tgaagattag ccagaaaacc       480
     gtttggaacc atttgcataa ggctggtctc aagaagaagc tcgatgtatg ggtgccacac       540
     gaattgacgc aaaagaacct tttggaccga attcatgcct gcgattcttt gctgaagcgt       600
     aacgaaatcg acccattttt gaagcggatg gtgactggcg atgaaaaatg ggtcacatac       660
     gagaacaaca ggcgaaaaag atcgtggtcc aagcgcggtg agccggtcca aacgatcgcc       720
     aagcccggat taacggccaa gaaggtttta ctgtgtgttt ggtgggattg gaagggaatc       780
     atccactatg agctgctccc atcgggccaa tcactcaatt cggacctaca ctgtcaacaa       840
     ctgaccagat tgaagcaggc gatcgacgag aagcggccag aattggccaa taggaagggt       900
     gttgtgttcc atcaagacaa tgccaggccg cacacatctt tgacgacgcg ccagaagctc       960
     cgagagcttg gatgggaggt tatatcgcac ccgccgtata gcccagacct ggctccaagc      1020
     gattatcacc ttttcaagca tttgcaaaat tttcttgatg gtacaaaact ggcctcaaga      1080
     gaggcttgtg aaaatgagct ggtcaagttt tttaccaata gggacgagga cttcttcaat      1140
     cgcggaatta tgaaattgcc ttcaaaatgg acaaaagtta tcgaacaaaa cggcgcatat      1200
     ttgatctaaa tccgataatc ctaactttgt taatttcatc gtcgaaataa agagaaaaaa      1260
     cgctcagaac tttttacttc acccaa                                           1286
//
ID   Mariner-46_LMi repbase;    DNA;    INV; 2080 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-46_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2080
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 41-41 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(436..1188,1088..1645)
FT                 /product="Mariner-46_LMi_1p"
FT                 /translation="MDLFHFTGEMGKVRHMWREENMKMAVEKVRLMKMTIR
FT                 EASERFSVPKSTLGDRLKNFLEGKEIELKPKLGNSKDFAKTFSDEQEQVLY
FT                 AHIKNLDNQLMPLNKEEFLKLAYQFAEKLKIKHRFNKEKLKAGKDFYYDFM
FT                 KRHPDLRLRTAESTSLQRAVGFSKEQVDRFFDTFSQLMDKYKFSPSKIFNA
FT                 DETGVTSVHTNRLKVMSVKGKKQVGKLTSGERGRNVTVLLSINAAGDCLSH
FT                 RCLSSPCSNGPQVREAGMLRFFSQLMLQGIVYPTAVCLPRVRMDNDLTKDA
FT                 PAGVFLMLNQLEVKKEQQEKRQKASEAKRKLREEKRKEKEEKKKEQASKKP
FT                 VCLAKTKRLTKRKMGWYKRKDASATEREISSEYARKKLTFDDKDTGSDGVT
FT                 HCIICDETLKRTGSSVDCVTDGPTKIAQTLKAALCIMNAIAVS"
XX
SQ   Sequence 2080 BP; 711 A; 336 C; 468 G; 564 T; 1 other;
     ggggaaggcc gggtagtatc ggacggcggc ttatatcgga caagtggtgt ttctcatact        60
     tgccacgtga ggcagcacca gtaatggtca cagaagtgtt ggctgtgacg acaaaggggt       120
     cgttacgcma tattgtaccg ctgcgagttt gtgtatgaaa gtgacggcgc attttctgtt       180
     ttgtgggtgt gttttcgtgt acgaagataa ctttggagtg ctgtacccag ctttaaagta       240
     agtgtaattc tgttataagg tggttagtag caataagggg tattgcacta tatgtttata       300
     ggcagttaat ctgtttacac ttattactaa gcactagaca gtcgaattat cttcccatgt       360
     cggtcgggtt gtatcggaca taagcattga gggttgtatc ggacaacaat cacagccaac       420
     aaaaaggagg ttttgatgga tttgtttcat tttacaggcg aaatgggcaa agtgaggcat       480
     atgtggaggg aagaaaatat gaagatggct gtcgaaaaag tacgtttaat gaaaatgacg       540
     attcgagaag ctagcgagcg tttttcagtc ccaaaaagta cccttggtga ccggcttaag       600
     aactttttgg agggaaagga gatagaactg aagccaaaac tgggaaactc taaggatttt       660
     gctaaaactt tcagtgatga gcaggagcaa gtactctacg ctcatattaa aaatctagac       720
     aatcagctaa tgccactaaa caaggaagag tttttgaagc ttgcttatca gttcgctgag       780
     aaattaaaaa taaaacatag gttcaataaa gaaaaattaa aggcaggaaa agacttctac       840
     tacgacttca tgaaaagaca tccagatctg cgactgagga cagcggaatc aacaagttta       900
     cagagagcag taggttttag caaagaacaa gttgaccgat ttttcgacac attttctcag       960
     ttgatggaca agtataaatt cagcccctcc aagattttta acgctgacga aactggcgta      1020
     acgtctgttc atacgaacag actgaaagta atgtcagtta agggtaaaaa gcaagttgga      1080
     aaattgacct caggtgagag aggcaggaat gttacggttc ttctctcaat taatgctgca      1140
     ggggattgtt tatcccaccg ctgtttgtct tccccgtgtt cgaatggata atgatctgac      1200
     gaaagatgcc ccagcaggag tgtttttgat gctcaaccaa ctggaagtga agaaagaaca      1260
     acaggaaaag agacaaaaag cttctgaagc taagaggaaa cttagagaag aaaaacgtaa      1320
     ggagaaagaa gaaaagaaaa aggaacaagc ctcaaaaaag cctgtatgcc tagctaaaac      1380
     caaacgttta accaagagaa aaatgggatg gtataaaagg aaggatgctt ctgcaacaga      1440
     aagggaaata tccagcgaat atgcaaggaa aaaactaaca tttgacgata aagacactgg      1500
     aagtgatggc gtgactcact gcattatttg tgacgaaact ttgaagagga ctggatccag      1560
     tgtcgactgt gtaacggatg ggcccacgaa aattgcgcag accttgaaag cagcactctg      1620
     tattatgaat gcgatagctg tttcttgaat aaaaaacaaa agttgtgtta aagatgcagt      1680
     aaaattgatt gctaggagtg taaaatggaa aaattattat tacttgtatc atttagtgaa      1740
     ttttttttcc gaaaattatt aaaatcactc aattgaataa acatttacca tttgatatgt      1800
     attaatagaa ataaacaagt gttttgatag aaatatttgc ttattttctg taatttacat      1860
     cttgtccgat acaaacctcc aacatttctc cgtagttaaa aatcagataa attttagaag      1920
     ccaacagata atagtaatta tctaccctaa gactagttgc taagatggtt gatttatgac      1980
     ttatgagagt acattttggt ggctattatt ttcatatcaa gacattactc tattcaaaat      2040
     ttgaaaaaaa gcttaaccgc cgatactacc cgaccttccc                            2080
//
ID   Mariner-47_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-47_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 886-886 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-47_HSal_1p"
FT                 /translation="MEINNVHYRHILLYYFKKGKRAADAHKKICRVYGDDA
FT                 LTERVCQKWYANFRSGDFDVNDAPRSGRPTEINSSDIKAIIEVNPSQSVRE
FT                 IATTLNISHTSVEKHLRQLGYVSRLNVWVPHQLTEANLTTRISICDSLRKR
FT                 QENDPFFKRMVTGDEKWVVYDNVTRKRSWGHSSEPPQTTSKAGLHPKKIML
FT                 SVWWDFKGVIYYELLPSGKTIDSTVYCSQLTKLNQAIRTKRPELANRKGVV
FT                 FHHDNARPHTSLTTRNKLLQLGWDVLPHPPYSPDLAPSDYHLFRSLQNSMN
FT                 GKTFKDEEAVKNHLDWFFADKPQTFYERGIMKLVERWLEVIDKDGQYIID"
XX
SQ   Sequence 1287 BP; 369 A; 278 C; 287 G; 353 T; 0 other;
     ttgggttggc aaataagttc gttcggtttt tgtttcagtg taagtttcat gcggattcgc        60
     ttttcttttc tcagcgctat cgtgcaaatc gaatacacat ttgaaaggtt atgtttcact       120
     gtttatgttg tgctgtgttt ggtttggcta acatcagtat tgtgtgtgct gcgtagctgt       180
     gaacatggaa ataaataacg tgcattatcg tcacattttg ctctattatt ttaaaaaagg       240
     caaacgagct gcggatgctc ataaaaagat atgccgtgtg tatggagatg atgccttaac       300
     agaacgcgta tgccaaaagt ggtatgccaa tttccgttct ggagatttcg acgtcaatga       360
     tgcgccccgc tccggtcgcc cgaccgagat taattcaagt gacattaagg ctataatcga       420
     agtaaatcca tcccaatcgg tacgagagat tgctacgaca ttgaatatat cccacacaag       480
     cgtagaaaag catttgcgcc agctgggata cgtttctcgg cttaatgttt gggtgccgca       540
     tcaattaacc gaggctaact tgaccacacg catatccatc tgcgattcgc tacggaaacg       600
     ccaagaaaac gacccatttt ttaaacgaat ggtgacgggt gacgaaaaat gggtcgtcta       660
     cgataatgta acgcgtaaaa gatcatgggg gcacagcagc gagccaccgc aaacaacctc       720
     gaaggcggga ttgcatccga agaaaataat gctctccgta tggtgggatt tcaagggtgt       780
     catctattac gaactgttac cgtcaggcaa aacgattgat tcaactgtat actgttcgca       840
     attgacgaaa ttgaaccaag caatccgcac aaaacgtcca gaattggcaa atcgcaaggg       900
     tgtcgtcttc caccacgaca acgccagacc tcatacgtca ttgaccactc ggaacaaatt       960
     gcttcagctt ggctgggatg ttttgcctca tcctccgtat tcaccggatc ttgccccttc      1020
     cgattatcat ttattccggt cgctgcagaa ctctatgaac gggaaaacct tcaaggatga      1080
     agaggccgtt aaaaaccacc tggattggtt tttcgccgat aagccccaga cgttttacga      1140
     acgcggcata atgaagttgg tggaaagatg gctagaggtc atcgataaag atggccaata      1200
     tataattgat taaaatttat cttgtgtatc aaaaaattgt gttttattct actctaaaaa      1260
     accgaacgaa cttatttgcc aacccaa                                          1287
//
ID   Mariner-47_LMi repbase;    DNA;    INV; 2394 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-47_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2394
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 42-42 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(249..1055,1132..1671)
FT                 /product="Mariner-47_LMi_1p"
FT                 /translation="MSEKNKRGRPRIHSPKSSLKKVGQGIPLRGQSREYVC
FT                 NVRQYFEMERENGGPLISINKVVERTAAALKVGRTTVINIGKEQNEKLNAH
FT                 SDPSNLNSEPPSLGTPGKKRCVEKRVTNLDSFEQDAIRRHLYAYYHRREHP
FT                 TLRKLHVTLREAGLFVGSKSSLRLVLLNLGFNYEKISGRKVLLERQDIAAW
FT                 RCRFLRQVKDIDFDDLVWLDETWVNAGHTLKTGWSDGSQEGMAIPVGKGSR
FT                 IIVAMQVQRVDLFLVVYTCSDRRKPRFSLLTMPVPHCCKGQSPNNISRKEE
FT                 ITQWLQRNNVKFDDGLKKVELLELVSLHKPRHPTYVVDEVAKKHGHSVIRL
FT                 PPYHCHFNAIELIWAQIKGHIARENKKFTVSEVERLLHEAVSKVTVENWNS
FT                 VVAHTKRVIQEAWKNECLLEDSVNELTIAVGESSESSSDTDISGIYQLSDT
FT                 EHSE"
XX
SQ   Sequence 2394 BP; 753 A; 458 C; 528 G; 655 T; 0 other;
     gtgcgattaa aactactttg gacttgacag ctagccgcgc gcgtgtcctt gagagggtgc        60
     gggccaaccc cacggcgagt tcaacacccc ccaccctgca tagttgccac tacttccccg       120
     ttagcggtca gtagctgcta acacgtggtg ttgtgcgcgt cgtgtcgtga actccgtgtt       180
     atattgccgt ctgcttttcg tctgtttcga cgcgtgcggc gcgcgcgcgc gtgtcctgtg       240
     cgtacgaaat gtccgaaaaa aataagcggg gtcgtcctag aatccacagt ccgaaatcat       300
     ctttgaaaaa agtcggacaa ggaataccat tacgaggaca atcgcgtgaa tacgtgtgca       360
     acgtaagaca atattttgag atggaaaggg agaatggagg gcctcttatt tccattaata       420
     aggttgtcga gaggactgca gcggcattaa aagtaggcag aacaaccgtt attaatatag       480
     gaaaggaaca aaatgaaaaa ctgaatgcac attccgatcc ctcaaatctt aattcggaac       540
     cgccaagtct aggaactccg ggaaaaaaac gatgtgtcga gaaacgtgtg accaatcttg       600
     attctttcga acaggatgcg attcggagac atctgtatgc atattatcac cgtagagaac       660
     atccaacttt acgaaaactg catgtaacgc ttagagaagc tggtcttttt gttggcagta       720
     agtcatctct tcgattagta ttattaaacc tggggtttaa ttacgaaaaa atatcaggtc       780
     gtaaggtact gttggaaaga caagatattg ctgcatggcg atgccgattt ttgcggcaag       840
     taaaagacat tgatttcgat gatttagtgt ggctagatga aacgtgggtg aatgctggtc       900
     atacgctaaa gacaggctgg tctgatggat cacaagaagg aatggcaata cctgttggca       960
     aaggaagcag aattattgtt gccatgcagg tacagcgcgt ggatttgttc ctggttgttt      1020
     acacgtgttc agatcgaaga aaacctcgat tttcatgaag aaatgaacca tacgttttta      1080
     cgatggtttg aaaattcgct ataccaaatt tgaagaaacc gtcgtacata attattgaca      1140
     atgcccgtac cacactgttg taaaggacaa agccccaaca acatctctag aaaagaagaa      1200
     attacacagt ggttacaacg aaataatgta aaattcgatg atggactgaa gaaagtggaa      1260
     ctattggaac ttgtgtcatt acataagcca cggcatccga catatgtagt agacgaagtc      1320
     gccaagaaac atggacattc agtaataaga ttaccgcctt atcattgtca cttcaatgct      1380
     atagaactga tatgggcaca aatcaagggg cacattgcac gtgaaaacaa gaaattcacg      1440
     gtgtcagaag tggaaagact gttacacgaa gctgtttcta aagtaactgt ggaaaactgg      1500
     aacagtgttg tagcacatac aaaacgtgtg attcaggaag catggaagaa cgaatgctta      1560
     ttggaagata gtgttaatga attaactatt gccgtcgggg agtcatctga aagttccagc      1620
     gacacagata taagcggcat ttaccagctt tcggacacag aacacagcga gtgatggtaa      1680
     gttgcaacat aatttgtaca tttttagttg ttttttgtcc tttcttccca cagttgctat      1740
     tttatactat aatgcaaata tttgtttatg tagccgtcta tgcaactgat taataacact      1800
     atttttccat atgcatttcg ctttattgta aggcatcttc agtggcctgt aatatataca      1860
     taattacgtt ttacaatatt tcgttttctt agtattgagg ttataaattt gctaatatat      1920
     tttgatgtga taagtataac atcaaaatat cattagcaaa cttagataac gcaccagaac      1980
     tgtttataac ccaaatacta aaaaacgtaa gaaaacgaaa tattgcaaaa cgtaattatg      2040
     tatatattac aggccactga agatgcctta caataaaggc gaaatgcatt ggaaaaatag      2100
     tgttatcagt tgcatagacg gctacataaa caaatatttg cattatagta tataatttgt      2160
     accttttggt ggtggtgatt tcgttatctt ggcatttcga gtttactatt cgttgcgaaa      2220
     ttcacgggac aagtgaaaat gtaacagtaa gtctccctaa gcggcggccc gcccgcatta      2280
     attcacaagc atttcaagga taccgcgcta gcagaagcct gctaccagcg gcagctggca      2340
     acatagcacc cctgccccag cgaactgtca agtacgaagt agttttaatc gcac            2394
//
ID   Mariner-48_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-48_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 887-887 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1207
FT                 /product="Mariner-48_HSal_1p"
FT                 /translation="MSNFVPTKQHLREVLLHYFILKKSAAESYRSLVEHYG
FT                 DNALSERSCREWFQRFKDGDYDVKDKERSGAPKKFEDEELETLLNEDPHQT
FT                 LKELSESLNVDESTISKRLKAIGFIHKQDYWVPHVLKDRDVEKRLTMCELL
FT                 LQRQKRKSFLHRIVTGDEKWIHYDNPKRRKSWVKPGQPSKSTAKRDIHGRK
FT                 VMLSIWWDQKGVIYYELLKPNETITADRYREQIVNLSRSLKEKRREYAKRH
FT                 DKVIFQHDNARPHVARPVKETLELLGWDVLPHPPYSPDLAPSDYHLFRSMQ
FT                 HGLSEQHFTSCEDIKNWLDEWISSKEEHFFYRGIHLLPEKWQNVIANDGKY
FT                 FE"
XX
SQ   Sequence 1287 BP; 440 A; 219 C; 272 G; 356 T; 0 other;
     ttaggtactt gaataagttt ccgccgttta ctgatagatg atgttagcag tactgtgtgc        60
     atgtagttta agatggtaat acatccatat agaagtacta caatcatggt ttaatattca       120
     gtattgccat ttgattgcag tgtaaacaac gaatttttct actgcattga aaatgtcgaa       180
     ttttgtaccg acaaaacagc atttgcggga ggtcttactc cattatttca ttttaaagaa       240
     aagtgcagct gaaagttatc gttcgctcgt ggaacattat ggtgacaatg ctctatccga       300
     aagaagttgt agagaatggt ttcaacggtt taaagatggc gactacgacg tgaaagacaa       360
     agaacgctct ggtgcaccaa aaaagtttga agacgaagag ttggaaacat tactgaacga       420
     agatccacat caaacgctta aggaattgtc agaatcatta aatgttgatg aatcgactat       480
     aagcaaacgc ttaaaagcaa taggatttat tcataaacaa gactactggg tgccacatgt       540
     tttgaaagac agagacgttg aaaaacgttt aaccatgtgc gaattattgc ttcaaagaca       600
     gaaaagaaag tcatttttgc atcgaatcgt tactggcgat gaaaaatgga ttcattacga       660
     taatccaaaa agaagaaaat catgggtaaa gcctggtcag ccatcaaaat caacggcaaa       720
     acgggatatt catggaagaa aggtcatgct gagtatttgg tgggatcaaa aaggtgtgat       780
     atactacgag ctgctgaaac cgaatgaaac catcactgct gatcgctatc gagaacaaat       840
     agtcaatttg agtcgatcat tgaaagaaaa acgtcgagaa tatgccaaaa ggcatgacaa       900
     agtcattttt caacatgaca atgctcgacc gcatgtagcg agaccggtta aggaaacatt       960
     agaactgctc ggatgggatg tgttacctca cccgccatat tcaccggacc ttgcgccatc      1020
     ggactaccat ctgtttcgat cgatgcaaca tggtctttcg gagcagcatt tcacttcttg      1080
     tgaggatatc aaaaattggc tcgatgagtg gatcagctca aaagaggaac atttttttta      1140
     tcgcggaatt catttgttgc ctgaaaagtg gcaaaatgtt atagctaacg acggaaaata      1200
     ctttgaatga tgtattgttt attcttctat tttactaagt tatataaatt tgaacaaaaa      1260
     acggcggaaa cttattcaag tacctaa                                          1287
//
ID   Mariner-48_LMi repbase;    DNA;    INV; 2402 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-48_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2402
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 43-43 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(432..947,1086..2048)
FT                 /product="Mariner-48_LMi_1p"
FT                 /translation="MAEKKRKQVSVSMEAKFGALKRLERGESVNKIALDLN
FT                 IGRSTVLGWKKKKSEIESWCLKRQCTESIAERKTMRSAEFEKVGETLYQWF
FT                 RVHREKGTPISGPILQEKALQFYEQFKDEGEPGFTASNGWLSRWKQRYGIK
FT                 LLSICGEKLSADPNNVSDFKTKLHEFIEKGTVRCNRRAQTQISANWKSKKK
FT                 PRAFKTVRCTSDGNFELPVWYRNQSNAWMSEAIFKEWFFQQFVPEVEKFLK
FT                 KKNLPRKALLILDNATTHPDVQYLQDKDIKAMFLPPNVTSLCQPMDQGALA
FT                 ALKRRYRRKLLSSLVLSLESGEELTAKLKKIDLLDVIGWVSQSWIELETIT
FT                 LIRSWRKLLDHAGNDLSRDDGINSENSDLIELMKKIPGCEESSSNDVNEWM
FT                 DLDGASEPLGEDEIIAAVKGRDVEGDDSEEEEEEDHRQERKVSHSEAVKFI
FT                 EGTLQYLEQQNATGMEILFLRRLRDQAARRRVETEKQSSITGFFKRLQ"
XX
SQ   Sequence 2402 BP; 750 A; 450 C; 559 G; 643 T; 0 other;
     cagtagaacc tctcaaactc gattcccgaa aactcgacat tccgtaaaac tcgacagggc        60
     tggtgaatta atattttttt tacaccgccc ataacgtaaa gctttccatc agtacatagg       120
     ccgcccgaga gcgctagaga ctcagactag gttactgggt tttccaaggt cgttcaacgc       180
     accctttacc tgcccagctg gggcgggcta ttgtttgcac acgttcgggg atttctgtgg       240
     ccactttcct tatcgtgagg ccgcgcgttg acctgggatt cccgggcagg tcataaacta       300
     ccctcgctac attgtcgtca ctgggcgttc agtttagtgt ttgttgagac acagttgtgg       360
     tcagttgctt ttgttcgaga gtggttgaca attgtttaaa cgagttttgt gctggaatat       420
     agagcgacag tatggcggag aagaagagga aacaagtgtc agtgtcaatg gaagcaaagt       480
     ttggtgccct aaaaagactt gagcgtggtg aaagcgtaaa taaaatagcg ttggacttga       540
     acatcggtag gtctacagtg ctcggttgga agaaaaagaa atctgaaatt gaatcgtggt       600
     gtttgaaaag acagtgtaca gaatccatcg cggaacgaaa aacaatgaga agtgcagagt       660
     tcgaaaaagt cggcgaaacc ctttaccaat ggttccgtgt gcacagggag aagggaacgc       720
     ctatatctgg acccatcctg caagagaaag ctcttcagtt ttatgaacaa tttaaggacg       780
     aaggagagcc tgggtttaca gcgagcaatg gttggttgtc aaggtggaaa caacgatatg       840
     gaatcaagct gctcagtatc tgcggggaaa aactgtcagc tgaccctaac aacgtgagtg       900
     acttcaagac caaactacac gagtttattg aaaaagggac tgtcaggtga tcaaatctac       960
     aatgcagatg agacaggact aaactttcga atgcttccta ctaaaagttt agctctgaga      1020
     gatgaaaaag ctgcaccagg ttttaagaga agtaaggagc gtgtgactat tcttgcctgc      1080
     agtaatgcaa caggagagca caaactcaaa ttagcgctaa ttggaaaagc aaaaaaaaac      1140
     caagagcatt taaaactgtc agatgcacaa gtgatggcaa ctttgaactc ccagtttggt      1200
     atagaaatca atctaatgca tggatgagcg aagcaatttt taaagagtgg ttttttcaac      1260
     agttcgtccc agaggttgag aagtttctga agaaaaaaaa tcttcccagg aaagctctac      1320
     tgattctcga taatgctacg actcaccctg atgtgcaata tttacaggac aaagacatta      1380
     aagcaatgtt tctaccgccg aacgtcacgt ctctctgtca accgatggac caaggagctt      1440
     tggcagcgtt aaagagaagg tacagacgta agcttttgtc atctttggtg ttgtccttgg      1500
     aatcgggtga ggagctaacg gctaaactaa agaagatcga tttattagat gtcattggat      1560
     gggtctctca atcttggatc gagcttgaga ccataaccct cattcgttct tggaggaaac      1620
     ttctagatca cgcaggcaat gatttgtcgc gtgacgatgg aatcaattct gaaaatagcg      1680
     acttgattga actcatgaaa aaaatcccag ggtgtgaaga gtcttcaagc aatgatgtca      1740
     atgaatggat ggatctcgac ggagcatcag aaccattagg agaagatgaa atcatcgcag      1800
     ctgtcaaagg gcgtgacgta gaaggggacg attcggaaga agaagaggaa gaggaccatc      1860
     gacaagaaag aaaagttagc cacagtgagg ctgtgaaatt tattgaaggg acattgcagt      1920
     acttagagca gcaaaatgcg actggaatgg agattctgtt cctcaggcga ctccgtgatc      1980
     aagctgcaag acgccgtgtg gagacagaaa agcagtcttc aatcacaggg tttttcaaac      2040
     gacttcagta agttttcttt tacacttttc ttctagtgtt cagaaaactt cccataacta      2100
     actgtgatgg actttttata agcagcataa acaacttcag taataattgt aatgaacact      2160
     gtattttcag attctactag gccttttgtc tcaatttttt ttattttttg attataagtt      2220
     ataaatgttg atataaatat ataattgtat ataataaatc aataaatgta caattttaat      2280
     actctaaata agcgttttta ttcaactcct agttattttt atttaagttc cctaaaactc      2340
     gacaacctca aaactcgaca acctttaagt ccacattgtg tcgagtttga gaggttctac      2400
     tg                                                                     2402
//
ID   Mariner-49N1_HSal repbase;    DNA;    INV; 887 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-49N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-887
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 888-888 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 887 BP; 271 A; 160 C; 222 G; 234 T; 0 other;
     cgagggtagt cccagaagta cctgacctga cgtatagata gcggttgttg tttgaaaaga        60
     atgactatgg tagaaagtac caaccttata aagcttaagt ttgaagtttg acgacgctac       120
     gttgtttagt atttgtttgg cagccatcaa tagtgaacgc tctcagtgaa tttgtaaaca       180
     tggaaaaaat tggtcatcgt tatgtgatac aatactttca tttgaaaggc ctcagtccaa       240
     ccaatatcaa agcggagcta gattctactc tgggggagtc tgctccttcg tttacaacag       300
     taaaatattg ggtggcagag tttaaacgag gccgtacgag ctgccaagac gaacatcgca       360
     gtggtcgacc aaatgaggtg accacgccag aaatggtgaa gaaaatccac aaaatggtat       420
     tggatgaccg tcgactgaaa gtgcgcgagt tagcagacat ggtaggcatt tcaaaaagtg       480
     ctgtacatcg catattgact gaaaatttgg acatgagaaa gctgtgcgca agatgggtgc       540
     cgcgattgga acaaaaacag cgtcgtgagg atgtttcaat cgagtgtttg gcgaagtttc       600
     gcagcaataa agccgagttt ttgcgtcgat tcataaccat ggatgaaaca tgggtccatc       660
     acttcacacc tgagacgaag gaacagtcaa aacaatggac caaggtggct tgatggctat       720
     tttgaggagc tcgacgattc ccactataaa cagggtatcg aagctattga acatcgctgg       780
     gaaaagtgta ttgagctaaa aggagactat gtagagaaat aaagatattt tttcccaaat       840
     tttttgtgtt ttctttgtta ggtcaggtac ttctgggact accctcg                     887
//
ID   Mariner-49_HSal repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-49_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 889-889 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-49_HSal_1p"
FT                 /translation="MEKIGHRYVIQYFHLKGLSPTNIKAELDSTLGESAPS
FT                 FTTVKYWVAEFKRGRTSCQDEHRSGRPNEVTTPEMVKKIHKMVLDDRRLKV
FT                 RELADMVGISKSAVHRILTENLDMRKLCARWVPRLLTMEQKQRREDVSIEC
FT                 LAKFHSNKAEFLRRFITMDETWVHHFTPETKEQSKQWTERGESAPKKAKTV
FT                 PSAGKVMASVFWDARGIIFIDYLQKGKTINGEYYANLLQRLSDEIKKKRPH
FT                 LAKKKVLFHQDNAPVHTSVIAMAKINELKFELLPHAPYSPDLAPSDYFLFP
FT                 NLKKWLGGKRFANNEEVESAVDGYFEELDDSHYKQGIEAIEHRWEKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1294 BP; 398 A; 240 C; 316 G; 340 T; 0 other;
     cgagggtagt cccagaagta cctgacctga cgtatagatg gcggttgttg tttgaaaaga        60
     atgactatgg tagaaagtac caaccttata aagcttaagt ttgaagtttg acgacgctac       120
     gttgtttagt atttgtttgg cagccatcaa tagtgaacgc tctcagtgaa tttgtaaaca       180
     tggaaaaaat tggtcatcgt tatgtgatac aatactttca tttgaaaggc ctcagtccaa       240
     ccaatatcaa agcggagcta gattctactc tgggggagtc tgctccttcg tttacaacag       300
     taaaatattg ggtggcagag tttaaacgag gccgtacgag ctgccaagac gaacatcgca       360
     gtggtcgacc aaatgaggtg accacgccag aaatggtgaa gaaaatccac aaaatggtat       420
     tggatgaccg tcgactgaaa gtgcgcgagt tagcagacat ggtaggcatt tcaaaaagtg       480
     ctgtacatcg catattgact gaaaatttgg acatgagaaa gctgtgcgca agatgggtgc       540
     cgcgattact cacaatggaa caaaaacagc gtcgtgagga tgtttcaatc gagtgtttgg       600
     cgaagtttca cagcaataaa gccgagtttt tgcgtcgatt cataaccatg gatgaaacat       660
     gggtccatca cttcacacct gagacgaagg aacagtcaaa acaatggact gaaaggggag       720
     aatcggctcc aaagaaggcg aagacagttc catctgcagg caaggtcatg gcgtcagttt       780
     tttgggatgc gcgtgggata attttcattg attatcttca gaaaggaaaa acaatcaacg       840
     gcgagtatta tgcgaactta ttgcagcgtt tgagtgatga aatcaagaaa aaacggccgc       900
     atttggcgaa aaagaaagtt ttgtttcatc aagacaatgc accagttcac acatccgtta       960
     tcgcgatggc caaaatcaat gagttaaagt tcgaattgct tcctcacgca ccctattcgc      1020
     cagatttagc cccctcggat tattttctgt ttccaaactt gaaaaaatgg ctcggtggta      1080
     aaagatttgc caacaatgaa gaggtggagt ctgcggttga tggctatttt gaggagctcg      1140
     acgattccca ctataaacag ggtatcgaag ctattgaaca tcgctgggaa aagtgtattg      1200
     agctaaaagg agactatgta gagaaataaa gatatttttt cccaaatttt ttgtgttttc      1260
     tttgttaggt caggtacttc tgggactacc ctcg                                  1294
//
ID   Mariner-49_LMi repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 20.01, Created)
DT   03-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-49_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1292
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 44-44 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1225
FT                 /product="Mariner-49_LMi_1p"
FT                 /translation="MDEKEFRVVIKHYFMKGKTPQETKEKLDKHYGDSAPS
FT                 IRTVYKWFQNFRSGHMGTSDAERSGRPVEVTTPEIIDKIHDMVMDDRRVKV
FT                 REIASAVGISNERVHNILHKHLDMRKLSARWVPRLLTLDQKRNRVKCCKEG
FT                 LQLFRKNPQDFKRRFVTVDETWIHYYTPETKEQSKQWVTKGESAPKKAKTG
FT                 PSAGKVMATVFWDSQGIILIDYLEQGKTITGAYYSSLLDRLKTELQEKRRR
FT                 LAHKKVLFHHDNAPAHTSAVVVAKLLEIGFQLVSHPPYSPDLAPSDYYLFP
FT                 NLKKWLAGRRFHSNEEVIAETNSYFAGLDNSYYSEGINKLEQRWTKCISLK
FT                 GDYVEK"
XX
SQ   Sequence 1292 BP; 390 A; 254 C; 314 G; 334 T; 0 other;
     cgaggggcgt ttgaaaagtc cgtgcaaagt ccgagagatg gcaccaccgg cgcgtatcga        60
     ggtcatgttt agttagtagc atctttggaa agaacgcaca ccaagtttca gccatattgg       120
     tctatttctt tgtgtttggc attcgtgtga atcaaggaag tcgagtgatt gtcaaagaat       180
     ggacgaaaaa gaatttcgtg tggtgattaa acattacttt atgaaaggca aaacgcctca       240
     ggagactaaa gagaagcttg ataaacatta tggtgactct gcaccttcga ttagaacagt       300
     ttataagtgg tttcaaaatt ttcggagtgg ccatatgggc acaagtgacg ctgaacgttc       360
     tggacgccct gtggaggtta cgactccaga aatcattgat aaaatccatg atatggtgat       420
     ggatgacaga agagttaagg tgcgtgagat tgctagtgct gtgggcatct cgaatgaacg       480
     ggtacataat attttgcata aacatttgga catgagaaag ctatccgcaa gatgggtgcc       540
     gcgattgctc acgcttgacc aaaaacggaa tcgtgtgaag tgttgcaagg aaggtttgca       600
     gctgttcagg aagaatccgc aggactttaa gcgtcgtttc gtcactgtgg atgaaacatg       660
     gatacattac tatactcctg agaccaaaga acaatctaaa caatgggtta ccaagggaga       720
     atctgcacca aaaaaggcga agaccggtcc ttcggccgga aaggttatgg cgacggtctt       780
     ttgggattcg caagggataa tcctcatcga ctatctggaa cagggtaaaa ctattacagg       840
     tgcatattat tcatcgttat tggaccgttt gaaaaccgag ctgcaagaaa aacgccggcg       900
     attggcccac aaaaaagtcc ttttccatca cgacaatgca ccagcacaca cctcagcagt       960
     tgtggtcgca aaattattgg aaataggatt ccaactcgtt tcacatcccc cctattctcc      1020
     agacttggct ccctcggact actatttgtt ccccaatttg aagaaatggc tggcgggacg      1080
     aagatttcat tcaaacgagg aggtgattgc agaaactaat agctattttg caggcttgga      1140
     caattcctat tattcggaag ggatcaacaa attagaacag cgttggacga agtgtataag      1200
     tctaaaagga gactatgtcg aaaaataaaa atggttttcc ccaaacacgt tagtagtttt      1260
     tatttttgca cggacttttc aaacgcccct cg                                    1292
//
ID   Mariner-4_ACe repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1303
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 512-512 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           113..1195
FT                 /product="Mariner-4_ACe_1p"
FT                 /translation="MEGHSVEQRVQIIKFYYQNQCSVRETFRALRDFYPRH
FT                 NRPAESTIRRLVAKFESTGSINNQPTPVRRRNARSAENIAAVRESVRENPR
FT                 RSISRRSQELGLSATSTWRILRRDLGLHPYKIQLTQELKVNDHRQRRVFAD
FT                 WVLEQLEVNPNFAKQIIFSDEAHFWMNGYVNKQNCRIWDDTNPREIHQLQM
FT                 HPEKVTVWCGFWSGGIIGPYFFQNEAGVAITVNGERYRSMISNFLWPKMDD
FT                 MDTDNMWFQQDGATCHTPHATMDILHERFEGMVISRGGDVNWPPRSCDLTP
FT                 LDFFLWGYLKSQVYTNKPQTIDALKVNITNAIQQIQPDLCEKVIENWTARI
FT                 RVTKRSRGGHLSDVIFHT"
XX
SQ   Sequence 1303 BP; 373 A; 297 C; 295 G; 338 T; 0 other;
     tagggtcttt caatagggac gctcgaaatt tgttagatca tagtagccat gttgttaaag        60
     tgacatctgt caaatttgtt gtgaattgtt tagtagtgta tggcaaatca ccatggaagg       120
     tcatagtgtt gagcaacgtg tgcaaatcat aaaattttat tatcaaaatc agtgctccgt       180
     tcgagaaacg ttccgcgcat tacgtgattt ttatcctcgc cacaaccgtc ctgccgagtc       240
     gactattcga cgtttggtgg ccaaattcga gtcaaccggt tcgataaata atcagccaac       300
     accagtacgt cgccgaaacg caaggtctgc tgaaaacatc gctgctgtgc gtgagagtgt       360
     acgggaaaac ccgaggcggt caatttctcg tcgttcacaa gaacttggcc tttctgcgac       420
     ttcaacttgg cgaattttgc gtcgggactt gggtctgcac ccctataaaa ttcaactgac       480
     ccaggaactt aaggtaaacg accatagaca acgccgtgtg ttcgctgatt gggttctgga       540
     gcagttggaa gttaacccaa atttcgccaa acaaatcatc tttagcgatg aggcccattt       600
     ttggatgaat ggatatgtga acaagcaaaa ttgtcgaatt tgggacgata ccaatccacg       660
     cgagatacac cagctccaaa tgcatcccga gaaagtcact gtttggtgcg gattttggtc       720
     tggcggaatc atcggtccgt acttcttcca aaacgaagcg ggcgttgcca taaccgtcaa       780
     cggcgagcgc tacagatcga tgataagcaa cttcttgtgg cctaaaatgg atgatatgga       840
     taccgataac atgtggttcc aacaggatgg cgctacgtgc cacacaccgc atgccacgat       900
     ggacattctg cacgagcgat ttgagggcat ggttatctcg cgcggcggcg acgtgaactg       960
     gccaccgaga tcgtgcgatt taacgccttt agacttcttc ctttggggct atcttaaatc      1020
     gcaggtctat acgaataaac cgcaaacaat tgatgctctc aaagtcaaca taacaaacgc      1080
     catccagcaa attcagccag atttatgcga gaaagtcatc gaaaattgga ccgcccgaat      1140
     acgtgtcacc aagcgaagcc gcggcggaca tttgagcgac gttatattcc atacttaatg      1200
     ccataaaata ttctttcaaa taaaaaaaaa attgagtgga tatctcacac acaacttgtt      1260
     ttatttacat ttaaaaatcg agcgtcctta ttgaaagacc ctt                        1303
//
ID   Mariner-4_AEc repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 546-546 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-4_AEc_1p"
FT                 /translation="MPSFEPNKRHLRELLIYFFNLKKSAAEAHRLLVEAYG
FT                 EAALSERSCREWFQKFKNGEFDVEDKERSGRPKVYEDAELEALLNEDSCQT
FT                 QKELALTLGATQQAISHRLKSLGMIQKQGNWVPYELKPRNVERRFSICEML
FT                 LVRHKRKGFLHRIVTGDEKWIHYDNPKKRKSWGSPGHASTSTAKPNIHGKK
FT                 LMLCIWWDQLGVVYYELLKPNETVTGALYRTQLMRLSRALKEKRAHYYSRH
FT                 DKIILLHDNARPHVAAPVKTYMETLNWEVLPHPPYSPDIAPSDYHLFRSMA
FT                 HGLSEQHFTSYEDIKNWIDNWIASKDEAFFQRGIRMLPERWEKVVASDGQY
FT                 FQ"
XX
SQ   Sequence 1291 BP; 413 A; 253 C; 282 G; 343 T; 0 other;
     tattaggtgt acaaataagt ttccgccgtt tgacaaaaga cggcgccact agcaagctat        60
     ggttaaaatt gtctgatgta aaacattata tcgtaaggtt ggacatctgt caacaacata       120
     accttgaaat actagcgatt ttgtatcagc atcatatatt tttttttgtg cgaaaatgcc       180
     gagttttgag ccgaataagc gtcatttgcg ggaacttttg atttacttct ttaatttgaa       240
     gaaatctgca gctgaggctc atcgattgct tgtagaagca tatggtgagg ctgccttaag       300
     tgagagaagt tgtcgtgaat ggtttcaaaa atttaagaac ggtgaatttg acgtcgaaga       360
     caaagaacgt agcggaaggc cgaaagtgta cgaagacgcg gaattggaag cattattgaa       420
     tgaagattcg tgccaaacgc aaaaagaact tgcacttaca ttaggagcga ctcaacaagc       480
     aatttcacat cgtttgaaat cattgggaat gattcaaaag caagggaatt gggttccata       540
     tgaactgaag ccgagaaacg ttgaacgccg attttccata tgtgaaatgc tgcttgtcag       600
     gcataaacga aagggttttt tacatcgtat agtcactggt gatgaaaaat ggatccacta       660
     cgataaccca aagaagagga aatcatgggg atcacctggc catgcttcaa catcgacagc       720
     caagccgaat attcatggaa aaaaactcat gttgtgtatt tggtgggatc agcttggtgt       780
     cgtgtattat gagttgctca aaccgaacga aaccgttact ggggctctct accgaacaca       840
     attgatgaga ttgagccgag cactcaagga aaaacgcgcc cactactact ccaggcatga       900
     caaaattatt ctcctgcatg ataatgctcg accacatgtt gcggcgccgg tcaaaaccta       960
     catggaaaca ctcaattggg aagttctacc ccacccgccg tattcaccag acattgcccc      1020
     ttccgattac catctatttc gatcgatggc gcatggcctg tctgagcagc acttcacatc      1080
     atatgaagat atcaaaaatt ggatcgataa ttggatagcc tcaaaagatg aagcgttctt      1140
     ccaacgcggt atccgtatgc taccagaaag atgggaaaaa gtagtggcta gcgatggaca      1200
     atactttcaa taaaacatta tgtatcgttc tttcacaata aatgcttaat ttttgataaa      1260
     aaacggcgga aacttatttg tacacctaat a                                     1291
//
ID   Mariner-4_BM repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   26-APR-2010 (Rel. 15.07, Created)
DT   26-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 939-939 (2010).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1223
FT                 /product="Mariner-4_BM_1p"
FT                 /translation="MELTRENSRAMIYYDFRSGLTQKQCVDRMISAFGDEA
FT                 PSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVTQENVDAVRKLIEEDRHV
FT                 TYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCV
FT                 RTLERFHAGSSNAVYNIVSGDESWIYAYEPETKNQSRVWVFENELKPTKIV
FT                 RSRSVAKKMVATFVSKTGHVTTIPLEGQRTVNAEWYASICLPQVVSELRKE
FT                 NCNRRIILHHDNASSHTAHRTKEFLEQENIELLDHPPYSPDLSPNDFYTFP
FT                 KIKNKLRGQRFSSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCVKFR
FT                 GEYFEKQ"
XX
SQ   Sequence 1291 BP; 405 A; 266 C; 269 G; 351 T; 0 other;
     cgagggctgc actaaaagta tcgggaatgg aatatttcca ctgttcctgt catattaaaa        60
     tctttttaat tgaaaactcc ttggttttaa aaatcgaata ccatttattt atttaaaaaa       120
     agattctcgg tcttgtcacg aggttttgtc aaacttgttt agtcgttgag aaaatggaat       180
     tgactcgaga aaattcaaga gcgatgattt attatgactt tcgaagtggt ttaacacaaa       240
     aacagtgtgt tgaccggatg atttctgcat ttggtgatga agccccatcc aaaaccacaa       300
     tttatcgctg gtttgctgag tttcaacgtg gacgtgtcaa gctcagtgat gatccccgtc       360
     aaggtcgtcc aaaaactgca gtcacccaag aaaacgttga tgctgtgcgt aagctgattg       420
     aggaagatcg acatgtgaca taccgcgaaa ttcaggcaac tttagacatt ggcatgagtc       480
     aaatacaaat aatcttgcat gaacaattag gtgtaaaaaa gttgttttcc cgatggatac       540
     cgcattcgct ctgtgaagag caaaaagcgg ctcgcgttac ttggtgcgtc agaactctcg       600
     aaagattcca cgcaggatcc tcaaatgctg tatacaacat tgtatcaggt gacgaatcct       660
     ggatatacgc gtacgaaccc gaaacaaaaa accagtcacg agtttgggtg ttcgaaaatg       720
     agttaaagcc aacaaaaatt gttcgttcac ggagtgttgc aaaaaaaatg gtggccacgt       780
     ttgtctccaa aaccggccat gttacgacta ttcctcttga gggacaaaga acggttaatg       840
     cagaatggta tgctagcatt tgtttgccac aggtcgtttc tgaactccgt aaagagaact       900
     gcaaccgccg catcatcctc catcacgaca atgcgagttc tcacaccgcg cacagaacaa       960
     aagagttttt agagcaagaa aacatagaat tattagacca tccgccgtac agccccgacc      1020
     taagccctaa tgatttctat actttcccta aaataaagaa taaattgcgt ggacagagat      1080
     tttcatcacc tgaagaagct gtggacgcct acaaaacggc cattttggag accccaactt      1140
     ccgaatggaa tggttgcttc aatgattggt tccatcgtat ggaaaaatgt gtcaaatttc      1200
     gcggagaata cttcgaaaag caataaatac atttttaaat agtaatgttg tgtcacttcg      1260
     ttaattcccg aaattttcag tgccgccctc g                                     1291
//
ID   Mariner-4_CFl repbase;    DNA;    INV; 1344 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 19.04, Created)
DT   09-JAN-2012 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1344
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 828-828 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. Probably still active.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1286
FT                 /product="Mariner-4_CFl_1p"
FT                 /translation="MDQRICIKFCVKNKIKCSDVLEMLTAAFGESTLSKKN
FT                 VYKWYKLFTEGREDVNDDARPGRPSTSTTDDNVEAVKKIVMENRRITIREV
FT                 AEDVGISVGSCHAIFSGVLGMQRVAAKFVPKLLNFDQKQRRVDIAQELLNA
FT                 VNDDPDLLKRVITGDESWVYGYDVETKAQSSQWKRPEEPRPKKARQVRSNV
FT                 KVLLTVFFDYNGVVHREFLPCGRTVNKEYYLEVMRRLREAIRKKRPALRKK
FT                 RPELWKNQSWILHHDNAPAHTSLLVRDFLAKVNTVTMPQPPYSPDLAPCDF
FT                 FLFPKLKRPMKGRRFATIEEIKTASLEELETIPKSAYQKCFEDWKKRWHKC
FT                 IISEGDYFEGDKIDIDE"
XX
SQ   Sequence 1344 BP; 400 A; 261 C; 319 G; 364 T; 0 other;
     tacgaggtgt gttcaaaaaa aaggtgactt ttcaaatttc gcgggctacg tacattcgat        60
     tttggaattt ttttttgtta tgttggtaca catgtcccca acatatgttg acattatcag       120
     ctgttttgca tgtttggttt gtttttcaca gatataaggg ttagacgtgt tttggtgtgc       180
     ttggcgattt tttgctatcg aaaaaaatgg atcaaagaat ctgtattaaa ttttgtgtga       240
     aaaataaaat taagtgctct gacgtacttg aaatgttgac tgcggcattt ggcgagtcta       300
     ctctgagcaa aaaaaatgtt tacaagtggt acaagctctt cacagaaggt cgagaagatg       360
     ttaatgacga tgcccgccct ggacgcccca gcacgtcaac aaccgatgac aacgtcgaag       420
     cagtgaagaa aattgttatg gagaatcgtc gaatcactat tagagaagtt gctgaggatg       480
     tcggcatatc ggttggctca tgccatgcaa ttttttcggg tgttttgggc atgcaacgtg       540
     tggcggcgaa gtttgttccg aaattgctga atttcgacca aaaacaacgt cgcgtagaca       600
     ttgctcagga gctgttgaat gccgtcaacg acgatccaga tttgctcaaa agggtcataa       660
     ctggtgacga atcatgggta tatggctatg acgtcgaaac caaagcccaa tcatcccaat       720
     ggaagcggcc agaagagcca agaccgaaaa aagctcgtca agttaggtca aatgtgaagg       780
     ttttgctcac tgttttcttc gattacaatg gcgtggtgca tcgtgagttc ttgccatgcg       840
     gtcgtacggt caataaggaa tattaccttg aagttatgcg ccgtttacgt gaagcaatac       900
     gaaaaaaacg cccggcatta cgaaaaaaac gcccggaatt gtggaagaac cagtcgtgga       960
     tattgcacca cgataatgcg ccagctcaca cgtcgttgct tgttcgtgat tttttggcca      1020
     aagtcaacac cgtaaccatg cctcagccac cgtattcacc ggacttggcc ccctgcgact      1080
     ttttcttgtt cccaaaactg aaaagaccca tgaaaggacg gagatttgcc acgattgagg      1140
     agataaagac cgcatcgctg gaagagctcg agaccatacc aaaaagcgca tatcaaaagt      1200
     gcttcgagga ttggaaaaag cgctggcaca agtgtataat atctgagggg gattactttg      1260
     aaggggacaa aatagatatt gatgaataaa taaatatttt tcgagaaaaa taaaaagtca      1320
     cctttttttt gaacacacct cgta                                             1344
//
ID   Mariner-4_DAn repbase;    DNA;    INV; 1640 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1640
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 260-260 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 27-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1338
FT                 /product="Mariner-4_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MAIHYKFEKILILVGRGPHCSKEEREKIVWLRKEGKT
FT                 YKEIQNILKCSAKMVSNAINHDSKPEKRGAKRKTTIIEDRRIVRFSKANPF
FT                 ASSRDIKADLSLEISDVTIRRRLLDQNLSARSPRKVPLLGKRHIKARLEFA
FT                 KSHLNWPVSKWRNILWTDESKLVLFGGKGSREYVRRAPNTEYHPNHTLKTV
FT                 KHGGLKILVWACFSYSGVGPIHMIEGIMDQRVYVDILKKVMLPFAEEEIPL
FT                 KWTFQQDNDPKHTSKLAKEWFNKEKIDVMPWPAQSPDLNPIENLWGDIKRY
FT                 VSKKSPTSKPQLWKVVQEAWGQIPLKRCQDLVDSMPRRCEAVIANKGFTTK
FT                 Y"
XX
SQ   Sequence 1640 BP; 539 A; 272 C; 335 G; 494 T; 0 other;
     cagctgtgtt catagaaata gcagtgcgac aggagcagca ctataaagct cttttttgcc        60
     atattccctt ttgatagttg atgacttgaa ctttctttta gtagaatgga atatagacat       120
     aagaaaagaa aaaaaatccc gccagattat ctccattttt gtgttttatc gataattttg       180
     gccatgtgca caactttttg gctgttcact gaaatagcag tttttgattt tgtttccaga       240
     aaagttacaa aatattttgt aattttgtaa aaagtgagtt taattaagtt cattattgta       300
     atttttatgg caatacatta caaatttgaa aaaattttaa ttttagtggg taggggacct       360
     cactgctcta aggaagaaag ggaaaagatt gtttggctac gaaaggaggg taaaacttac       420
     aaggaaattc aaaacatttt aaaatgttca gccaagatgg tttcgaatgc cataaatcat       480
     gattccaagc cagaaaaacg cggtgcgaaa cgcaaaacaa caatcataga ggaccgccgt       540
     atagtgcgct tcagcaaagc gaatcctttc gcatcctcta gggacataaa agcggacctg       600
     agcttggaga tcagtgatgt gactattcgc cgacgactct tagaccaaaa tttgagtgca       660
     cgaagtccta gaaaggttcc attgcttggt aaaagacata taaaagcaag gttggagttt       720
     gccaaaagcc acttgaactg gccagtatcg aaatggcgta atatcctgtg gacagacgag       780
     tcaaaacttg tgctttttgg aggaaaaggc tctagagagt atgttcgtcg agccccaaac       840
     actgaatacc acccaaacca tacgcttaaa accgtgaagc acgggggcct aaaaatcttg       900
     gtttgggcat gtttttctta tagtggcgta ggtcccatac acatgataga gggaatcatg       960
     gatcaacgag tatacgtaga tatactaaaa aaagttatgc tgccgtttgc tgaggaagag      1020
     attccattaa aatggacatt ccaacaggat aatgatccaa agcacaccag caaattggcc      1080
     aaggagtggt tcaataaaga aaagattgac gtaatgcctt ggccagcaca atctccagac      1140
     ttaaatccca tagaaaattt atggggggac atcaagcggt atgtgtccaa gaaatctccg      1200
     acttctaaac cgcagctttg gaaagttgtg caggaggcat ggggccagat tccccttaaa      1260
     cggtgccagg atctggtgga ctcaatgcca cgtcggtgtg aggctgtaat agctaataag      1320
     gggtttacaa ccaaatatta ggaactaata aatattttct ttaatataat taagttattt      1380
     ataagctatt gagaattttg ttttattttt aatttaacac tgctatttca atgatcatca      1440
     taatgtatac ttattttttt gttattagcc atattttttt aaatatttaa gtatgtagct      1500
     tggaaaaaat tttgatttac ttaaaaataa atacattaag ctgttataga taaattttgt      1560
     gtcaaatttg tgtttataat agtattttcc attcttgaac gtgcaggttg taggcactgc      1620
     tatttcaatg aacacagctg                                                  1640
//
ID   Mariner-4_DBi repbase;    DNA;    INV; 944 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-4_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-944
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 739-739 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. ~40-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 944 BP; 268 A; 178 C; 227 G; 270 T; 1 other;
     ctgtaagcaa aaagtaaggt gaattttcaa tttaaaattc gcgggcttaa gatggcggac        60
     tagttctttt tttcttgagt tggcaggact gctgatgaca tctggcggta atttcatgtc       120
     aatgtcagta tcagtactat atttacgctt gtgtttacca aacgatcaaa gtgcatttgt       180
     cgatttttca atgtctgatt taattgagca gagaagtgcc atcaattttt gtttgcggaa       240
     tgaaatttcg gctgcggaaa cgttgaggat gttgcggaag gcctttggtg attctaccat       300
     gtcccagaaa aatgtttata agtgktaaaa agacttcaaa gagggtcggg aacgcgttgt       360
     tgacttggag cgctccggac gaccatcgac gtcgacagat gaccaacacg tcaatgaagt       420
     gaaggaatta gtgttcaaaa atcgtcggtt gactgttaga gaccttactg atatgatcgg       480
     aatatcagaa ggatctgcga aaagcgtttg cgtgaagcaa ttcgtcgaaa aagaccagaa       540
     ttatgggcca acaactcttg gtttttgcat cacgataatg caccgtcgca cactgcactc       600
     gttcttcgtg accatttcgc caagaattcg acgcatatcg ttccgcaacc accgtattct       660
     cctgatttgg ctccgtgtga cttctggcta ttcccaaaac tcaagagacc actccgggga       720
     acgcgtttcg agtcgattga agagataaaa gcggaatcga cgagggcgct catggctata       780
     ccggaaaggg actatttggc ctgtttcgag gatttgaaaa aacgttggca taagtgtatt       840
     ttatcgggag gggattactt tgaaggggat gaaattgatt caggagaata aataaagaat       900
     tttcacttta caaacaaatt ctccttactt tttgcccaca gtag                        944
//
ID   Mariner-4_DBp repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1648
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 587-587 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs, ~250-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..1323
FT                 /product="Mariner-4_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MGRGTVLSEKEKSQIEAYYECGLSLHKIAEKTGRHRK
FT                 TISSFLRNKENYGKNFKGGNNRVISDVNRRSILRQASNSHDSSAKIRENSG
FT                 VKASLSTVQRVIRKATHLKRLKLKKKPPLNCQRKETRLNFSRLHMSWTTEW
FT                 QYVVFSDEKKFNLEGPDGYNYYFHDLRKEEHTLDRLHSRKGGVMVWGAISY
FT                 FGTCELQFLTSRMNAENYKNVLITAFPQMQNLFQNLKWSFQHDSAPIHTAR
FT                 SVKSWIVAQNVDVLEWPPYSPDLNIIENVWGWLARKVYESGKQYKTKTELI
FT                 DGIKHAWSTISLNYLDQLYKSIPNRIFEVISNKGGSTHY"
XX
SQ   Sequence 1648 BP; 572 A; 285 C; 308 G; 483 T; 0 other;
     cactgcgcgt catcaggtta gcgcccccca tctaactcaa cattagtgat tatttttcgg        60
     taaacacatt gagctacatt gatccaataa tttttttaat aaactgcaat gaatttactt       120
     taaaatgaaa ctaatttgaa tcatataacg cttaagataa gattttaatg aattttttag       180
     aaaaatgttc aagaaaaacg taacataaaa ttggtcatca ggatagcgcc tgcaaatgtg       240
     atttcaatta tctcgtttgt tttgccgcgt acagtcacca aattttttgt gtaacttaaa       300
     acaataatta gctgtgtaaa aatcgaaaaa atgggaagag gaacagtttt atctgagaag       360
     gaaaaatcac agattgaggc atactatgag tgtggactat ctcttcacaa aatcgccgag       420
     aaaactggaa ggcacaggaa aacaatatca agttttctta gaaataaaga aaactatgga       480
     aaaaacttta aaggcggtaa taatcgtgtg atttctgatg ttaacaggcg atcgatacta       540
     aggcaagcat caaattcgca tgactcatct gcaaaaataa gagaaaactc aggtgttaaa       600
     gcgagtttgt ctacagttca aagagtcatc agaaaagcta cacatcttaa gagattaaaa       660
     ttgaagaaaa aaccccctct taattgccaa agaaaagaaa cacgcttaaa tttctctcgc       720
     ttgcacatgt catggactac tgagtggcaa tacgttgttt tctctgatga gaaaaaattt       780
     aatttagaag ggcccgatgg gtataactat tactttcatg acctacgcaa agaggagcat       840
     actctggacc gcctgcacag ccggaaaggg ggtgtcatgg tgtggggggc catatcgtac       900
     tttggcacct gcgagttgca gtttttaaca tcgcgtatga atgccgaaaa ctacaaaaat       960
     gttttgataa cggcatttcc gcaaatgcaa aaccttttcc aaaacttgaa gtggagtttc      1020
     cagcacgaca gtgctccaat tcacacagcc cggtccgtga agtcgtggat tgtagctcaa      1080
     aacgttgatg tccttgaatg gccaccatac tctcccgacc tcaatatcat cgagaacgtc      1140
     tggggttggc tggctaggaa ggtgtatgag tccggaaaac agtacaaaac aaaaacagaa      1200
     ttgatagatg gaataaaaca cgcttggagc accatttcat taaattactt agatcagctg      1260
     tacaaatcta ttcctaatcg aattttcgaa gtaatttcca acaaaggcgg atccacacat      1320
     tattaattaa tcattaagtt tgtttaaaaa agagtattta agtattaaat cgcataattg      1380
     ttgctttaaa aacaatttat aatgaattta tgtcagatgg cgctatcctg atgaccaatt      1440
     ttatgttacg tttttcttga acatttttct aaaaaattca ttaaaatctt atcttaagcg      1500
     ttatatgatt caaattagtt tcattttaaa gtaaattcat tgcagtttat taaaaaaatt      1560
     attggatcaa tgtagctcaa tgtgtttacc gaaaaataat cactaatgtt gagttagatg      1620
     gggggcgcta acctgatgac gcgcagtg                                         1648
//
ID   Mariner-4_DEu repbase;    DNA;    INV; 1252 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1252
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 756-756 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~32-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           211..1134
FT                 /product="Mariner-4_DEu_1p"
FT                 /note="transposase."
FT                 /translation="MRHCSFAWHTKTXVGDFEALRRGGQCTLAPEHRCELK
FT                 KRITRNCRVSVRKIAREIGVNRESVRLIAKNELNLKPYKLQKVHLLTDDNK
FT                 RVRLQRCRQLKRRAAGQKWERILFTDEKIFTIQQAHNHQNDRSWSAEAPGT
FT                 SAIIERRQCEQSLMVWGGICATGKTPLVFIDQGVKINQEVYRRDILETVVL
FT                 PWAQQHFGDTEWTFQQDSAPAHRAKLTQDWCKANFPDFITSSEWPPYSPDL
FT                 NPMDYSVWSILESRACAKRHISLEALKQSLLREXDRLSEEDLRPIALNFQK
FT                 RLGLCIAAQGSHFETG"
XX
SQ   Sequence 1252 BP; 366 A; 275 C; 284 G; 325 T; 2 other;
     cagggtgaca ataaataacc cggacaaact ttgaagcaat ctattataaa tgttatgatg        60
     cgcccttaaa taaatgcatt tatcgatagc ttgtactttt ctgaaacaaa tatatttaca       120
     tttttgtgat tcccaccaat ttgatatttg tttcgggatg tctaacaatc gttgtgcaat       180
     tttaaaactg tttcaacaag gaaatcgtca atgcgacatt gttcgtttgc ttggcatacc       240
     aaaacaawcg ttggcgattt tgaagcgctt cggcgaggag gtcaatgcac gctcgcacca       300
     gaacatcgtt gcgaattgaa aaagcggatc actcggaatt gcagagtctc ggtcagaaaa       360
     atagcccgag aaatcggagt gaatcgagaa agtgttcggt tgattgcaaa aaatgaactt       420
     aatctcaagc cctacaagct ccaaaaagtg catcttctta cggatgacaa taagcgcgtg       480
     agactccaaa gatgccgtca gctaaagcgt cgggccgcag gtcaaaaatg ggagcgtatt       540
     ctcttcacgg acgagaagat attcaccatc caacaggcgc acaatcacca aaatgacaga       600
     agctggtcgg ctgaagctcc aggtacctct gcaataatcg agcgccgtca atgtgagcag       660
     tctttaatgg tttggggagg aatatgcgcc accggcaaaa caccccttgt tttcatcgat       720
     caaggggtca aaatcaatca ggaagtgtac cgccgggaca ttttggaaac tgttgtgctt       780
     ccttgggccc agcagcactt cggtgatacg gagtggacgt ttcaacagga ttcagcgcca       840
     gcccatagag ccaaattgac tcaggactgg tgcaaagcca attttccgga ctttatcaca       900
     tccagtgaat ggccacctta ctcgccagat cttaatccga tggactacag tgtgtggtct       960
     attttggagt ccagggcatg tgctaaacgc cacataagtt tggaggcgct gaagcaatca      1020
     ttgctccgag aawgggatcg attatcggaa gaagacctgc ggcccattgc gcttaatttc      1080
     cagaaacgtt tagggctctg catcgcagcc caaggaagcc acttcgaaac cggctgaata      1140
     tatgttaaca caatacctat ttaatagttg tgtatctgca ttttttctca aatacagttc      1200
     cttaaaaagt tatgatcaaa aatgtgtgtc cgggttattt attgtcaccc tg              1252
//
ID   Mariner-4_DF repbase;    DNA;    INV; 1709 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.06, Created)
DT   05-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1709
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 771-771 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           386..1405
FT                 /product="Mariner-4_DF_1p"
FT                 /translation="MPGKRVSFDVTQLVYYNHTIGKSTADIANMFKLNIRT
FT                 VQNIISRAKNENRLENKPVNGRPGKLSNRAIRIIMKKVDQNPMISTRKLAV
FT                 EVREECGVDVSHETIRRTIRSHNFTSRVARKKPLLSKQNVEKRLSFAQTLL
FT                 DEPPSYWNDVIFCDESKIMLHYNEGPNRVWRKPLCALQNKNIIPTVKFGKL
FT                 SVMVWGCISSKGVGDLVFIENTMDAKQYLEILKTNLVNSANTFGFGRSFKF
FT                 YQDNDPKHKAHSVRMWTLYNCGKVIETPAQSPDINPIENVWAYLKKKVAKR
FT                 HPTSRPMLKEFILEEWNQIPIDYIEKLINSMKLRLEAVVKAKGHHTKY"
XX
SQ   Sequence 1709 BP; 615 A; 269 C; 304 G; 518 T; 3 other;
     tacatacaat ttgtcacaaa agtgttttcg cgtgaagatt tttttakaaa tttcccattc        60
     ttattaagaa aaaaccacta tgcaataagt tttgagwaag atttttttta ttttatatta       120
     ttcatgtatt tcttaagaat acacaaaaaa caaaacataa attttccaac taacaaaaaa       180
     gatataacaa aaacaaaaaa agtctacata wtctccactg tcaaataagt gttttcgttt       240
     ttacatttct ggtgttttct cgaatttttc ttctagaata tgccttttag ggtcgactag       300
     atgatataaa tatgcatttt gagcttttca atgtcagttc tccgtactta cagacgttaa       360
     tagtcgtata aataagtgtt ttacaatgcc gggcaaaaga gtttcttttg atgtgaccca       420
     attggtatat tacaaccata ccattgggaa aagtactgca gacattgcaa atatgtttaa       480
     attaaatata agaactgtcc aaaatataat aagtcgggca aaaaatgaga ataggctcga       540
     aaataagcca gtaaatggtc ggccgggtaa gctctcaaac agagctattc ggattataat       600
     gaaaaaagta gaccagaacc ccatgatctc aacaagaaaa ctggctgtgg aggtaaggga       660
     agaatgtgga gtggatgttt ctcatgaaac tattcgcaga actattagga gccataattt       720
     cacatcccga gtagctagaa agaaacccct gttatcaaaa caaaatgttg aaaagcgtct       780
     ttcattcgct caaactcttt tggatgagcc cccaagctat tggaacgacg tgattttctg       840
     tgacgagtcg aaaataatgt tacattataa cgaaggaccc aaccgagtgt ggagaaaacc       900
     gttgtgtgcc ctacaaaata aaaacattat accgacagta aaattcggca agctgtccgt       960
     catggtgtgg gggtgcatct caagcaaagg agtgggtgat ttagtattta tcgaaaatac      1020
     gatggatgct aaacaatatc ttgagatttt aaaaaccaat ttggtaaaca gcgcgaacac      1080
     atttggtttt gggcgcagct ttaagtttta ccaagacaac gacccaaaac ataaggctca      1140
     cagtgtacga atgtggacgc tctataattg cggtaaggtg attgagactc cagcccagag      1200
     cccggatatc aaccctatag agaatgtgtg ggcgtatttg aaaaagaagg tcgcaaaaag      1260
     gcatcccaca tcgcgaccaa tgctaaagga atttatttta gaagaatgga atcagatccc      1320
     aatagattat atagaaaaac taattaattc aatgaaatta cggcttgaag ctgttgttaa      1380
     ggccaaaggg catcatacca aatattaaat aatattaaaa aatattatta ttataagatt      1440
     agcgttaagt aatcacccag ttccttaaaa cgaaaacact tatttgacag tggagaatat      1500
     gttgactttt tttgtttttg ttatatcttt tttgttagat ggaaaattta tgttttgttt      1560
     tttgtgtatt cttaagaaat acataaataa tataaaataa aaaaaatctt tctcaaaact      1620
     taatgcaaag tgcttttttt ttcaataaga atgggaaatt tctaaaaaaa atcttcacgc      1680
     gaaaacactt ttgtgacaaa ttgtatgta                                        1709
//
ID   Mariner-4_DK repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1639
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1197-1197 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 27-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1639 BP; 522 A; 294 C; 316 G; 505 T; 2 other;
     cagctgtgtt cactgaaata gcagtgcgac agaggaacaa cttcaaaacg tttttttgta        60
     catattcctt tttgcaagct gatctattgc acattgtttt tgtaaaatgg aacataaaga       120
     taagaatcga gaaaaaattc cgttagattt gctctatttt tatgttttat tgatattttt       180
     tcacatatgc agctcgtttt ggccgatcac tgaaatagca gtttttaatt ttctttcgca       240
     aaaagtgccg aaatttcttt taattttgta aaaaatgagt ttaattacgg tcgttattat       300
     agtttatact ataatacacc tttacaacgc aaaaaaaatt attttagtgg gcgcaggacc       360
     tcactgctcc atgagagaaa ggtatcagat aacttagcct agaaagaagg gcaaaacatg       420
     taaagagtct ccaaatcttt caaattgttc ttttaaaata gtttataagt cataaaatat       480
     gaaccgaacc caaaaaaacc gaggtacgat tcgcaaaacc acaattgtac aggctcgacg       540
     cgtacttcgc ttcagcaaag ctcgtccttt tgcatcctct agggatatat gagcgggaat       600
     tggcatggga atcagtcatg ggaccattcg ccggggactt attgaataaa ttttagattc       660
     gcgaagtcca tggaaaatgt cactgcttgg ttaaaggcat atcaaggcca gatcsgagtt       720
     cgccaatagc cacttgaact gccactattc aaatggcgta atatcctttg gacaaatgac       780
     tccaaactgg ttttatttgg tggaatagga caagacaata tgtccgtcga cctccaaata       840
     catagtaccc cccaaaccat acgctgaaga cagtaaaaca cggtggccta aaaatcatgg       900
     tatgggtata cttttcatac aacgttgtag gtcccgtata tatgatckgt gggatcaaag       960
     accattatgt ttatgtccaa atattaaaaa ctgtcttgca gccgtatcct gaggaaaata      1020
     tgccattaat ttggacattt cagcagtaca gtgaccctaa tcataccatc aaggtggcca      1080
     aggagtgggt tcttaatgaa aaagtggatg caatgccatg gcctgcacag tccccggata      1140
     taaatccgat cgaaaactta tgggggacat caagggctac gtattaaaga agtttccgac      1200
     ttctaagccg cagctttggc aatttgtgca ggaggaatga ggccatattc ccctcaagcg      1260
     ttgctaagac ttggtggact ccttgccacc caggtatgag gctatgatag cttctaaagg      1320
     ctatttaaca aaatattaga tcatagtcaa ttagaattta agaagaaata ggtttcttat      1380
     acgatatttt taaatttatg aagaatttta gtttttcact gctatttcaa tgatcggcat      1440
     aatatagacc ttttttgttg ttattagcta tatcttctaa agggtttatg ttacctaaat      1500
     taaatgattg tggtattgtt aataattaaa tacactaagc ctttatgaaa aaaaatttat      1560
     gaaaatagtg tttgtaacag gattttccga tcttaaacgt gcaggtcgtt gggcactgct      1620
     atttccgtga acacagctg                                                   1639
//
ID   Mariner-4_DMel repbase;    DNA;    INV; 1570 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 25.03, Created)
DT   21-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   DNA transposons from fruit fly, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-4_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1570
RA   Bao W.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 20(3), 583-583 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 1570 BP; 517 A; 283 C; 294 G; 476 T; 0 other;
     cactgcgcgt catcagatta gcgccccctg catggctccg tttcttctta tgttctgtat        60
     tttgccattg cacgaaaatc tatcaatgtt attgtttttt gttcactgat attccctctc       120
     tctttgagga taaaaaagag gtcctgagaa gaaccgttat ctttttaatt ctgctttgtt       180
     ttacttttga atatcttcca taatttgaaa ggtaggacaa caaaattttt tatgctgtta       240
     aattgaaaag tttgctttaa ttttgcgaaa aaatgggaag aggaacgctg ttatccttgc       300
     aggaaaaatc cgaaatcata gctttctatg aatgcgggct gtcttttcat aaaattgcag       360
     aaaaaacggc agacatcgca aaactatagc caattttatt aaaaacaagt aaacttatgg       420
     aaaaaactat aaaggtggca ataacagtgt ctttaacgcg gcagatcgca ggtccatacg       480
     tcgaatacct tgcaattccc acgactcctc cgccaaaatt cgagaaaaaa gtggtgaaaa       540
     cccgagcaaa tcgttgattc aaagggtgat taagaaagct aaacatttaa aacacgaaaa       600
     actgaaaaaa aaaaacacct cttaataagt tgcgaaaaaa gcacgcctga gttttgctcg       660
     agctcatatg acctggtcta aggagtggca ttatgtcgta ttttcggacg agaagaaatt       720
     taatctggag gaaccagacg gctatagtca ttactatcat gatttgcgta aagaggagca       780
     cattttggat cgctttcaca gtcgggttgg aggtgtcatg gtatggggcg cagtatccta       840
     ttatggcccc tgtgaattgc agtttttaac accaaaaatg aacgcgaaag attataattg       900
     tgtattaaaa actgcatttc cctactttaa aaacgttttt ggaaatctag aatggcattt       960
     tcagcacgac aatgcccaat ccacactgca cgttcggtaa aaacatggat tcaaagcgaa      1020
     aatgtaaaag ttctggaatg gccaccatac tcccaggacc ttaatacaat agaaaacgtg      1080
     tggggatggt tggctgggaa ggtatacgag ggtggtaaac aatatgccac tcaagaggaa      1140
     tcgatcaccg gaataaaact cggttggtct acgattactt tggattacct acaaaaaata      1200
     tatgattcac ttcccagacg aatgtgtgaa gtccttgaaa acaaaggagg atcaactcat      1260
     tattaatttc ctttaaaaat attctaattt aaatatttaa gtgttaatca tctaattttt      1320
     ttcgaaatga atcgaaaaaa cttaaattat cgtaggggcg ctatcctgat gttttcttta      1380
     ctgttttgtt tttctttttt atttaataaa aatctataaa caacaaactg catcccatat      1440
     aaacttttca tttatagaat tgttcaactt ttgagggaaa aaatttccaa agctctcgct      1500
     taaacagttt tctaaatatc tcacatcaaa gatttttgct caaggggcgc taacctggtg      1560
     acgcgcagtg                                                             1570
//
ID   Mariner-4_DRh repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1664
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1398-1398 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TA TSDs. ~250-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1664 BP; 595 A; 275 C; 336 G; 457 T; 1 other;
     cactcactcg catatctctg cgtacacccc aaaaaaattt caaaatctaa ctttgaacat        60
     taactgttcg gccatttatg catgtatttt attcattctt tttttaaaca aaactatggt       120
     ttattgtctt cattgacgta gaaatattag aaatattcaa cagggggtta tattttattt       180
     ttaattttaa acctaacact acgaaaaagt gtacgcgcaa aagtctgcgt acagcagttt       240
     tcaacttcga ggaatgcagg attgtgcgat ttccgttaat tttgttgtcg ccgatctact       300
     ttagaatgtc taaaaataga cattacgcag ttaaaatgaa actctttcat tataataacg       360
     agcatattgc aacatggaac aaaaaggcaa ggaaatttct gttgaggagt ggaaaattat       420
     attaaaaggt tttttggatg gaaaatctta tagagaaatt ggtgctttag ttgstagaac       480
     ccactcatcc atccaaagag tgataaataa ctacaactcg gctggaagta tcttgccaaa       540
     ggctcgttct ggccgtccgc ctttgcttat aaaccgcgag cagaggaata ttatcaaatc       600
     tattcagctc aacccaagga cgacagctca ccaggcaaag ctgaaggtcg aggatagatt       660
     ttccaaaaga gtttccgaag atactgtacg ccggaccata aaaaaggctg actaccatag       720
     cagagtcgcc cgcaaaaaac ctctcatatc ggaagtcaat agacaaaagc gcctaacctt       780
     tactaatgag tatatttcca aacaccaaga cttctggaat aagattatat ttcccgacga       840
     aactaaattc tgcatatttg gaatcaaggg aaaggttttg gtatggagga aaagcggaga       900
     agcctcaaat taagaaaatt tggttggcac agtaaagcaa ggaggaagcg gaataatggt       960
     gtgggggtgt atggcagcaa gtggcgttgg aaaattggca tttatcgagt taataatgga      1020
     tcagaaaatc tatattgaca tattaaaaaa caatttaaaa gaaagtgctg aaaaattagg      1080
     gctcgaaagt gaatgttggt tccaacaaga caacgacccg aagcatacgg cgcagaatac      1140
     caagctttgg ctgctgtata acgtcataaa tcagctgcga acacctcccc aaagtcctga      1200
     tctaagccca aatgagcatt tttgggatct tcttgagagg aaaatccgaa gacacacgat      1260
     aacatctaaa aaaatgctca agaatgtgat tctcgaggag taggggaaaa ttactgcaaa      1320
     tgagaacaaa aaaaaagtgg attccatccc gagacgcctt acggaagttt tgcagagaaa      1380
     aggataccct accagttact aaaaataata ttatttgtgt tttaaacagg tgtacgcaga      1440
     cttttgcggg tacatttttt ggtagtgtta agtttaaaat taaaaataaa atataagaca      1500
     ctgttgaata atttaaaaaa aaatacgtca atgaagacaa taaattataa ttatgtttaa      1560
     aaaaaagaat gggttgaata tatgcataaa tggccgaaca gctagggttt aaagttagat      1620
     tttgaaattt ttttggggtg tacgcagaga tatgcgagtg agtg                       1664
//
ID   Mariner-4_DSuz repbase;    DNA;    INV; 1311 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1311
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 133-133 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..1166
FT                 /product="Mariner-4_DSuz_1p"
FT                 /translation="MDNWDTETRIWIVRRYHALESVVSVQREYRRTFGGNP
FT                 PSRWTIMRLVNNFAEHGTVNRRPYHRNPSVRTEETIAAVAAAIQNNPRVST
FT                 RSLSAQMGVSRQSLQSIMHKDLDLFPYKIQMANKLNAADLPIRLEFCQKML
FT                 QMVEEDGNMLNCLFMSDEAHFDLSGNINKQNCRIWSASNPQILHETELHPL
FT                 RVTVWCAVSSRCIVGPYFFEENGHTVTVTGDRYLSMLREFFYPELRRMRIS
FT                 FNSVWFQQDGAAPHIAQPVMTELRRKFPNKLISRNSTFRWPPRSPDLTAPD
FT                 FFLWGYCKQEVYKAKPTNLNELRQSIRETIAAIPVSTLQAVMNNFLVRCRT
FT                 CINEQGGI"
XX
SQ   Sequence 1311 BP; 413 A; 277 C; 260 G; 360 T; 1 other;
     cagggtggct gatgaaagcc gctaccaaaa aaaaattaaa tacctttttt tctatttaat        60
     gaatctggtt aatttttttt tattttgcag attgactttt acatttmaca aaaatggata       120
     actgggacac tgaaacaaga atttggattg tccgccgcta tcacgcactg gagtccgtag       180
     tttcggttca aagagagtat aggcgcacgt ttggcggcaa tcctccgagc agatggacca       240
     taatgagact tgtaaacaat tttgccgagc atgggacagt caacagaaga ccttaccatc       300
     gaaacccttc agttcgaacg gaggaaacaa tcgctgctgt agctgctgcc atacaaaaca       360
     atccacgtgt ttcgacaaga agcttatctg ctcaaatggg tgtaagcaga cagtcattac       420
     agtcaattat gcacaaagat ttggacttat tcccatataa aattcaaatg gccaacaaac       480
     tgaacgctgc agacttgccg attcgcttgg aattttgcca gaagatgctt caaatggtgg       540
     aagaggatgg aaacatgttg aactgtcttt tcatgtctga cgaggcccat ttcgatttaa       600
     gcggcaacat aaacaaacaa aattgtcgaa tatggagtgc ttccaaccca cagatactcc       660
     atgagacgga attgcatcca cttcgtgtca cagtgtggtg tgcagtttca tcacgctgca       720
     ttgtcgggcc ctacttcttc gaagaaaacg gtcacaccgt tacggttact ggagaccgtt       780
     acttgagcat gttgagagag tttttctatc cagaattacg ccgaatgaga atttctttca       840
     actctgtgtg gtttcagcaa gatggtgcag ctcctcacat agcccaacct gttatgacag       900
     aattgcgacg aaaatttccc aataagctga tatccagaaa ctccacattc cgttggccac       960
     ccaggtcgcc tgaccttact gcacctgact ttttcttgtg gggttattgc aaacaggaag      1020
     tctacaaagc aaaaccaaca aatttgaatg aactaaggca atccattcga gaaacaattg      1080
     cggctattcc tgtctcaact ctccaagcag taatgaacaa ctttttggta agatgccgca      1140
     catgcatcaa cgagcagggg ggcatttaaa ttccattatt tttaaaacta attaagctat      1200
     atttaataaa attgaatgag ctttaacatg aataaaagaa aaatgaattc catacactga      1260
     aaaaaaaatt atttgagttt cttaatgtag caaaattcat cagccaccct g               1311
//
ID   Mariner-4_DTa repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   16-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1293
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6219-6219 (2021).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-4_DTa_1p"
FT                 /translation="MEKKEFRVLIKHCFLIGKNTVEAKAWLDKHYPDSSPG
FT                 KSTIKDWYNEFKRGRVDIKDAERSGRPKTAVTPENVAKIRKMVLTDRKLKL
FT                 KEIADASKISEGSVFTILHEHLDMRKLCSKWVPRLLTSDQKQQRIDASETC
FT                 LSMLKRNRTDFFRRYVTMDETWIHHYTPESSRQSSEWVVAGESRPKRPKTQ
FT                 ISAGKVMASVFWDAHGILFIDYLEKGKTINSEYYIKLLDRLDRVIKEKRPH
FT                 MAKKKPLFHQDNAPCHKSMATMVKLSELRFELLPHPPYSPDMAPSDYWLFS
FT                 DLKKHLQGKRYRSNEEVIVDTETYFEGKSSSFYKNGIERLEKRWTECIAVD
FT                 GNYIDE"
XX
SQ   Sequence 1293 BP; 424 A; 242 C; 287 G; 339 T; 1 other;
     tcacatcgct caattagttc gcggcccgac atataaggag cagtagtaag caaatatmga        60
     tattttttat cgaaagtgtc gattatcata agctctgtgt aaaaattata caactctgtg       120
     accacgtgct tttaagttac aaatttttaa gtaatacaac ctttgggttt ttctacaata       180
     tggaaaaaaa ggagtttcgt gtcctgatta agcactgttt tttgatagga aaaaatacag       240
     tagaagcaaa agcttggctt gataaacatt acccagattc ttctccggga aaatcaacca       300
     tcaaagattg gtacaatgaa tttaaacgtg gtcgtgtgga catcaaagac gctgaacgca       360
     gcggtcgccc aaaaacagct gttacgccag aaaatgtggc aaaaatccga aaaatggtat       420
     tgaccgatcg caaattgaaa ttaaaggaga tagctgatgc ctcaaagata tcggaaggca       480
     gtgtgtttac gatattacat gaacatttgg acatgagaaa gctctgctcg aagtgggtgc       540
     cgcgattgct aacatcggac caaaagcaac aacgcatcga tgcttccgag acgtgtttaa       600
     gcatgttgaa gcgcaatagg accgactttt ttcgccgtta cgtaaccatg gatgaaacct       660
     ggatacacca ctatactcca gaatccagtc gtcagtcttc tgagtgggtg gtagccggtg       720
     aaagccgtcc gaagcgtccc aaaacacaaa tatctgcggg taaggttatg gcttctgtat       780
     tttgggatgc acatgggatt ttatttatag actacctgga aaaaggtaaa acaataaaca       840
     gcgaatatta tataaaactg ctggatcgat tggatcgcgt tatcaaggaa aaacgtccac       900
     atatggccaa gaagaaacca ctgtttcacc aggataatgc accatgccac aagtctatgg       960
     caacaatggt gaaattgagt gaattgaggt tcgaacttct gccgcaccca ccttattctc      1020
     cagatatggc ccccagtgac tactggcttt tttcagatct caaaaagcac ctccaaggca      1080
     agagatatcg atcaaatgag gaggtgattg tcgatactga gacctatttt gagggtaaaa      1140
     gttcatcttt ctacaaaaat ggcatagaaa ggttggagaa gcgctggact gagtgtatag      1200
     ccgtagatgg aaactatatt gatgaataaa acaaaatttt caaaaaaaaa agtgtttttc      1260
     cttgttaggc cgggaactta ttgaggggtg tga                                   1293
//
ID   Mariner-4_DY repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   08-JAN-2012 (Rel. 17.09, Created)
DT   08-JAN-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposon families from fruit fly.";
RL   Repbase Reports 12(9), 1732-1732 (2012).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..1190
FT                 /product="Mariner-4_DY_1p"
FT                 /translation="MNRLTPEQRLQIVQFYFENNGSVRNTYRALRPFYRRQ
FT                 NRPSEQLIRLTMDRFRTAFTLIDNSHPQRRRTVRTEEAIAAVERSIEEDPN
FT                 ESIRHRAQELDLCPSTLWKILRKDLGLRAYKIQLVQELKPNDHQARRRFVE
FT                 WAQNEIAVVPDFHKRILFSDEAHFWLNGYVNKQNCRIWSEANPQVYVETPL
FT                 HPEKLTVWCAVWAGGIIGPYFFKNDDGQNVTVNGDRYRAMITNFFIPELND
FT                 HNVQELWFQQDGATCHTARATIDLLKDTFGDRLISRFGPVNWPPRSCDLTP
FT                 LDYFLWGYVKSLVYADKPQTLNHLEDNIRRVIADIRPNMLEKVIANWTSRL
FT                 DYIRASRGGHMPEIIFKM"
XX
SQ   Sequence 1292 BP; 371 A; 271 C; 279 G; 371 T; 0 other;
     tgtttttttt agaggtatag aactttaagt tggcattact gttcaagatg gcgaccgatt        60
     taacagctgt caagtgattt attctcagtt tggtttggca attcgtcatg aatagactca       120
     cgcctgaaca acgcttgcaa atagtgcaat tttatttcga aaataatggt tctgtgcgga       180
     atacgtatcg cgcactacgt ccattttatc gtcgacaaaa tcgtccatca gagcagttaa       240
     ttcgattaac catggaccgt tttcgcaccg cgtttactct tattgataac tcgcatcccc       300
     agagacgccg tacggtgcgt acagaagaag ctattgctgc tgtagagcgt agcattgagg       360
     aagacccgaa tgagtccatc cgccatcgag cacaggaatt ggatctgtgt ccatccactt       420
     tatggaagat tttgcggaag gatcttggtt tgcgtgctta caaaatccaa ctcgtgcaag       480
     aattgaaacc aaacgatcat caagcaaggc gtagattcgt cgaatgggcc caaaacgaga       540
     ttgctgttgt tcccgatttt cataagcgaa ttttgtttag cgatgaagcg cacttctggt       600
     tgaatggcta cgtcaacaaa caaaactgcc gcatttggag tgaagctaat cctcaagtgt       660
     atgtcgaaac accgttacat ccagaaaaac tgactgtttg gtgcgctgta tgggctggtg       720
     gaatcattgg tccgtacttc ttcaaaaacg atgatggcca gaacgttaca gtcaatggtg       780
     atcggtatag agccatgatt actaactttt tcattcctga attgaacgac cataatgtcc       840
     aggagctgtg gttccaacaa gacggcgcaa cgtgtcacac agctcgtgcc acaatcgatt       900
     tattgaaaga cacgtttggt gaccgcctaa tttcacgttt tggacctgtg aattggcctc       960
     caagatcttg tgatttaaca ccgctagact actttttgtg gggctatgta aagtcattgg      1020
     tctatgcgga taagccacaa acgctaaacc atttggaaga caacattcgc cgtgttattg      1080
     ccgatatacg gccaaatatg ttggaaaaag tcattgcaaa ttggacgtcc agattggact      1140
     acatccgagc cagccgtggc ggtcatatgc cagaaatcat atttaaaatg taatgccaca      1200
     agattatctt tcatgtcaat aaaattcatg tcaatcgaat aatccatcgt tgttttattg      1260
     caatttaaag ttctatacct ctaaaaaaaa ca                                    1292
//
ID   Mariner-4_FoCa repbase;    DNA;    INV; 1301 BP.
XX
AC   .
XX
DT   30-OCT-2019 (Rel. 24.12, Created)
DT   30-OCT-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1301
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2472-2472 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. TA TSDs. 28-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1242
FT                 /product="Mariner-4_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MDFQKTEVRSTIRFFALQGESATEIFEKLHKVYGDST
FT                 PSYSTVSRWVTEFKCGRKNVEDEPRPGRPISATDEFTCSKVQEFVMQDRRV
FT                 TINQIAEEMGISRGSVGFILHEKLRLSKLSSRWVPRLLTLAQKEERVRCCR
FT                 NLLNLCQLDPVNFHTKIVTGDETWIHHYDPETKQQSMQWLTTGQSGPIKAK
FT                 ATKSAGKVMATIFWDANGVLHTDYISKGSTMNANHYVKVLEELRYNIRNKR
FT                 RGSLQGGLFLLHDNASSHTAKIVKAALDRSAFWKIDHPPYSPDLAPCDYYL
FT                 FPHMKKIIRGRRFESDNELISCVHSMLNSFTKEFFSEGMKKLIQRAKRCIE
FT                 LGGDYVEKPQNELE"
XX
SQ   Sequence 1301 BP; 407 A; 265 C; 279 G; 350 T; 0 other;
     cgaggggagg ccaataagta atgcgaatct acccttcaaa gataagatac aaagctcaga        60
     tttcgtccat tcaatctaca tatatcctgt acattgtgtt ccaaaaatca taagattccg       120
     atatctcatt ctttcacaat ctctgagcaa agtcagacat cacaagcaaa aatggatttt       180
     cagaaaactg aggttcgttc caccatacgg ttttttgcat tacaaggtga atcggcaacc       240
     gaaatttttg aaaaattaca caaagtttac ggtgatagta ctccgtcgta tagtactgtt       300
     tctcgttggg tgactgagtt taagtgtgga agaaaaaatg ttgaagatga accccgacct       360
     ggccgaccaa tttcagccac tgatgagttc acgtgttcaa aagtccaaga gtttgtgatg       420
     caggataggc gtgttactat caaccaaata gctgaggaaa tggggatttc acgtggtagc       480
     gtaggtttca ttctacatga aaaacttcgg ctttctaagc tatcctctcg ttgggttcca       540
     cgcctgctta cactagcaca aaaagaggaa agagtgcgat gctgtcggaa cctgttaaat       600
     ttatgccaat tggatccggt caactttcac accaaaatcg ttactgggga tgagacatgg       660
     atccaccact atgatcccga aacaaaacaa caatcaatgc agtggctgac tactggtcaa       720
     agtggcccaa tcaaggcaaa agcaacgaaa tctgcaggga aggttatggc gactattttt       780
     tgggatgcca atggagttct gcatacggat tacatatcga aaggaagtac aatgaatgcc       840
     aatcattatg tgaaagtctt ggaggaatta cgctacaaca tcagaaataa gaggagggga       900
     tccctgcaag gtggactttt cctgcttcac gacaacgcat cgtctcatac tgctaagatt       960
     gtcaaagctg cgctggatcg atctgcgttc tggaaaattg atcacccccc atattctccc      1020
     gacctggcac cctgtgacta ctaccttttc ccacatatga aaaaaattat caggggaagg      1080
     agattcgaga gtgataacga gcttatctcg tgtgtgcatt ctatgctaaa cagcttcact      1140
     aaagaatttt tttctgaagg catgaagaaa ctgatacaaa gagctaagcg ttgtattgaa      1200
     ttgggaggag attatgttga aaagccgcaa aatgaattgg aataaatacc tttctttgac      1260
     gagataaatc attattcgca ttatttaatg gcctcccctc g                          1301
//
ID   Mariner-4_HMM repbase;    DNA;    INV; 1320 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1320
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2642-2642 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. TA TSD. ~50bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..1205
FT                 /product="Mariner-4_HMM_1p"
FT                 /note="HTH and DDE transposase."
FT                 /translation="MAWSGQHRAFVVEEFIKNGGSVITTQRAFRLHFAIGR
FT                 RDPIPTGPTIRNWVSNFRATSSALKTRPQGRIRTSTSAENVDRVRASIQQS
FT                 PRRSVRKHAASLGLSFSSVRRILHRDLKFHPYKIQVVQELTVRDLDTRTNL
FT                 CRDIQQIPRTAVLIFSDEAHFHLAGTVNKQNFRYWAENNPRNLHERPLHSP
FT                 RVTVWCAIAEFGVWGPYFFEEDGQVVTVTSARYCDMLETFLKPKLEELTQN
FT                 HDNDNIWFQQDGATAHTSRRSMEILRQMFPGHLISLRGDVGWPPRSPDLTP
FT                 CDFFLWGYLKEKVYTHRPRTIDELKAAITEEINAIPLNMTRRVMDNFRERL
FT                 QQCVVNGGRHLQDIIFKTN"
XX
SQ   Sequence 1320 BP; 379 A; 290 C; 304 G; 347 T; 0 other;
     cagggtgagt catattgaac tttccggttt tggaaggacg ttgcacgaag aagggaagga        60
     gtagaagggt ggggatggtg tcattagacg cgccatgaca tgcagtttta gtgtgagcaa       120
     tggcttggtc gggacaacat cgtgcgttcg tagttgaaga gtttattaaa aatggcggct       180
     ccgtgatcac aacacagcgt gcgttccgtt tacattttgc tattggtcga cgtgatccca       240
     ttcccactgg accaacaatc agaaattggg tatcaaattt tagagcaaca tcatcagcat       300
     taaaaacaag accacaaggc cgaattagga cgtcaacgtc agcggaaaac gtggatagag       360
     tgcgggcttc aattcaacaa tcccctcggc gttctgttcg gaaacatgcc gcttcactag       420
     gattatcttt cagtagtgtc cgcagaatac tgcatagaga ccttaaattt cacccataca       480
     agattcaggt agtgcaagaa ttaacagtta gagacttaga cacacgaaca aatttatgcc       540
     gcgacattca gcagatcccc cgcactgctg ttttgatctt cagtgatgag gcacattttc       600
     acctcgccgg aactgtcaac aaacagaatt ttcgatactg ggctgagaat aacccacgaa       660
     acctacacga acgaccactt cacagccctc gagtgacagt gtggtgcgct attgcagagt       720
     ttggtgtgtg gggtccctat ttttttgaag aagatggtca agtcgtcaca gttacctctg       780
     ctcggtattg cgacatgctt gaaacttttc tgaaaccgaa attggaggaa ttaacgcaga       840
     atcatgacaa cgataacatc tggttccaac aagatggtgc tacagcccat acatccaggc       900
     gttcaatgga aatcctgcga caaatgtttc ccggtcatct catttctttg cgaggtgacg       960
     ttgggtggcc gccgagatca cctgatttaa ccccctgcga tttctttctc tggggttacc      1020
     tgaaggaaaa ggtgtacacg catcgtcccc gaaccatcga tgaactgaag gctgcaatca      1080
     cggaagaaat caatgctatt ccgctgaata tgactcgacg agtaatggac aacttccggg      1140
     aaaggcttca gcagtgtgtg gtcaatggag gtagacattt acaggatatc atttttaaaa      1200
     ccaactaaat taaaactgca tgttatgtgc tttcaaacaa taaaataatt tttactgcat      1260
     gtcgctttgt ttttaataca caccttattg aaatcggaaa gttcaatatg actcaccctg      1320
//
ID   Mariner-4_HSal repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-4_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 844-844 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Probably active.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-4_HSal_1p"
FT                 /translation="MSIDKVHLRHVMLYEFRKGINVAAAVKNIQDVYQDEA
FT                 PAKRTVEKWFAKFRRGEFNLEDEPRSGRPSDIDDDVLRTLVLNNPRISTEE
FT                 VATALNVDRSTAFRRLKKMGFDLKLDIWVPHLLTEKNKIKRISAAVSLLGR
FT                 LNNESFLDRLVTGDEKWVLYNNVQRKRTWKQSGEHGDAMPKASLHPMKVML
FT                 SVWWDCKGIIYFELLPAGETIDSDKYCRQLTNLNREIKEKRPILSNRKGVV
FT                 FHHDNARPHVSKKTLRKLKSLKWDVLTHPPYSPDIAPSDYHLFRSLQNYLN
FT                 GKNFDSLEALKNGVSSFFESKPRSFYDRGIRMLPERWEKIIENDGEYIID"
XX
SQ   Sequence 1290 BP; 388 A; 261 C; 286 G; 355 T; 0 other;
     tattgggtga gtgcaaaagt tcgtgcggag tttcaataga tggagttata agcgtcgtaa        60
     agtgttgtca ttaatacttc catctacata ttatataacg ttggaaaggt gacgtcttca       120
     gctgttatta aaaaaaaaat catttgtttt catacaaact gcttcgagaa atatcacttt       180
     aaaaatgagt atcgataagg tgcatttacg gcatgttatg ctttacgagt ttcggaaggg       240
     aataaacgtt gccgcagccg taaaaaacat tcaggatgtt tatcaggatg aagcaccagc       300
     taaacgaact gtggaaaaat ggtttgctaa atttcggcgc ggagaattta accttgaaga       360
     cgagccacgc tctggtcgac cttctgacat tgatgacgat gttttgcgta ctttagtgct       420
     caataatccg cgaatttcaa cagaagaagt tgctacagca ctaaacgttg accgatcaac       480
     cgcttttcgg cgtttaaaaa agatgggatt cgatttgaag ctcgatatat gggtgcccca       540
     tttgctgacc gagaagaaca aaatcaagcg aatttctgca gccgtttctt tactcgggcg       600
     gctcaataac gagtcgtttt tggatcgact agtgacgggc gatgagaaat gggtcctcta       660
     caacaatgtt cagcgcaaac ggacatggaa acaatcaggt gagcatggtg acgcaatgcc       720
     aaaggccagt ttgcacccga tgaaggtgat gctctctgtt tggtgggatt gcaagggcat       780
     aatctatttc gagcttctcc ccgctggcga aacgattgat tcggacaagt actgtcgcca       840
     attaaccaat ctgaatcgag aaataaaaga gaaacgtccg attttgtcaa atcgcaaggg       900
     agtcgtcttt catcacgaca acgccagacc acacgtttcg aaaaagacgc tgcgcaaact       960
     gaagagcctg aaatgggatg tcttaacgca tccaccgtat tctcctgata tcgcaccatc      1020
     tgactatcac ttgttccggt cattgcaaaa ttatttaaat ggaaaaaact ttgactcttt      1080
     ggaggcctta aaaaacggcg tctcttcgtt cttcgaatct aaaccgcgca gtttttatga      1140
     tcgaggcatc cgtatgctgc cagaacgttg ggaaaagatt atagaaaacg atggagaata      1200
     tatcattgat tgaataaaga tttttgtttg cctaatcact gtgtgacttt tactcacaaa      1260
     ctccgcacga acttttgcac tcacccaata                                       1290
//
ID   Mariner-4_LHu repbase;    DNA;    INV; 2863 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 19.02, Created)
DT   11-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-2863
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 362-362 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. ~230bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1007..2080
FT                 /product="Mariner-4_LHu_1p"
FT                 /translation="MASLTEQERISLLMMRGWGDRQRSYNEVVDLFNATFR
FT                 VGEAGISKGTVSKTIRRFEETGSNKSRPKPGRPKSETNEEHQFEVALSFVE
FT                 NRRLSTRNGARQLGMSQRSVLRNLKHVKFHPYKIHLHQELNEDDFDRRVQF
FT                 CEIMMDRIHQDPNFLHLIAFTDESTFQLNGEINRHNFRYWSDENPHWLLEA
FT                 HTQTPQKLNVWTGLIRDRIIGPFFIQGNLDGEKYLDLLINDIVPAIQEITG
FT                 DDFNEVWFQQDGAPPHYRNIVRDYLNVTFPNRWIGRRGTIEWPARSPDLAP
FT                 PDFFLWGYIKSKVYITQPRDLAELRQRIVDVCTQIPPEMVFSAIENFYIRL
FT                 GRCQIVDGRHFEHLP"
XX
SQ   Sequence 2863 BP; 886 A; 545 C; 584 G; 848 T; 0 other;
     cagggtgagg caaaagtatg gaaacccccg aataagtttt gaggaaggca ttttacgaaa        60
     aaatgttaaa tacaaaagtt ttaggaaatt tctctggctt ttcaatggtg accttggatt       120
     tgaccttgac cgtgaccttg aaggtcatat gaaggtcaag tccatttttt aaataggaac       180
     ccccattttt catcgtagat tcagaaagag cggaaaattt tacatcggaa tatgaccttg       240
     accgtgacct tgaaggtcat atgaaggtca agtctatttt tttaaatagg aacccccatt       300
     tttcatcgta gattcagaaa gagcggaaaa ttttacatcg gaatatgacc ttgaccgtga       360
     ccttgaaggt catatgaagg tcaagtccat ttttttaaat aggaaccccc atttttcatc       420
     gtagattcag aaagagcgga aaattttaca tcggaatatg accttgacca tgaccttgaa       480
     ggtcatatcg aggtcacggc cattttttca aaaaacgaga acgtctattt ttatcgtaca       540
     tttggaaaat tttaaggtaa atgtcacgtt aagctccccc cccctccaca aacaagaggg       600
     agatatgttt tcctatgtat tttgacatgc tgatttcaaa tccggagcaa ttttttggca       660
     ctgttcagta ggttccgaga aaaacgtaaa aaataccaaa aaaattccta gaaggccctt       720
     gtattacatg tcaatttagt atgccaaggg gccttctagg aattgggaca agtggttatc       780
     tattggtact ttggtcattg gcgaagtgcg aagaagttct aaaatttatt ttcacgataa       840
     ttgcatagtc ctccgaaaag cagagtaaca gttcttgtca gggtaccata gttagtgaag       900
     aatacgacac agtaattttt gtaaggtccc ttttgggtta ataaaagatc acttcagtgt       960
     gacattttct gtttccttac tactgtctct ggtagtttac ttccaaatgg cttctctaac      1020
     agagcaagaa agaatttctc ttttaatgat gagaggttgg ggggacaggc agagatcgta      1080
     caatgaagtt gtggatttat ttaatgcgac gttccgcgtt ggcgaagcag gtatttctaa      1140
     gggaactgtt tctaaaacta ttcggcgatt tgaagaaact ggaagtaata aaagtcgtcc      1200
     aaaacctgga cggccgaaat ccgaaacaaa cgaagaacat caatttgaag tagccctatc      1260
     attcgttgaa aatcgtagat tatctactag aaatggagct cgacagcttg gaatgagcca      1320
     acgttcagtt cttaggaatt taaaacacgt aaaatttcat ccttacaaaa ttcatcttca      1380
     ccaagagtta aatgaagatg attttgaccg tcgagtgcaa ttttgtgaaa ttatgatgga      1440
     tagaattcat caggatccta attttctgca ccttatcgct tttacagatg aatccacatt      1500
     tcaacttaat ggggaaatta atcgtcataa tttcaggtat tggagcgatg aaaatcctca      1560
     ttggctactt gaagctcata cacaaacacc acaaaagttg aatgtatgga caggcttaat      1620
     tagagatcga ataattgggc cttttttcat acaaggcaat ttggatggag aaaaatatct      1680
     ggatttgctc ataaacgaca tcgttccagc tatacaagaa ataactggcg atgattttaa      1740
     tgaggtttgg ttccaacaag acggtgcacc accgcattat cgaaatattg taagagatta      1800
     cttgaatgtt acattcccga atcggtggat aggtcggaga ggaacaatcg aatggccagc      1860
     aaggtcccct gacctggctc cacctgactt ttttctttgg ggttacataa aaagtaaagt      1920
     ttacataacc caacctcgtg atttagcaga attgagacag cgaatcgtag atgtttgcac      1980
     acaaataccg cctgaaatgg tgttcagtgc tattgagaat ttttatattc gactagggcg      2040
     ctgccaaata gtcgatggaa gacactttga acacttgcct taagagtgtc cttaaaggca      2100
     tcgatcacgc cacggtggtg ggtttgaaag cttcagaccg gaaacgatcg cattttcaca      2160
     cacacacaca cacacacacg cgcgcgcgcg cgcgcgctgg acaagagttc accttcacgc      2220
     ggtgtccggt gataacaggc attcctggtt aacgaactca cttacataca atttttttgg      2280
     tattttttac gtttttctcg gaacctactg aacagtgcca aaaaattgct ccggatttga      2340
     aatcagcatg tcaaaataca taggaaaaca tatcttcctc tcgtttgtgg aggggggggg      2400
     agcttaatgt gacatttatc ttaaaacttt ccaaatgtac gataaaaata gacgttctcg      2460
     ttttttgaaa aaatggccgt gacctcgata tgaccttcaa ggtcatggtc aaggtcatat      2520
     tccaatgtaa aattttccgc tctttctgaa tctacgatga aaaatggggg ttcctattta      2580
     aaaaaatgga cttgaccttc atatgacctt caaggtcacg gtcaaggtca tattccgatg      2640
     taaaattttc cgctctttct gaatctacga tgaaaaatgg gggttcctat ttaaaaaaat      2700
     ggacttgacc ttcatatgac cttcaaggtc acggtcaagg tcaaatccaa ggtcaccatt      2760
     gaaaagccag agaaatttcc taaaactttt gtatttaaca ttttttcgta aaatgccttc      2820
     ctcaaaactt attcgggggt ttccatactt ttgcctcacc ctg                        2863
//
ID   Mariner-4_LMi repbase;    DNA;    INV; 1626 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1626
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3006-3006 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           329..1351
FT                 /product="Mariner-4_LMi_1p"
FT                 /translation="MPRKANTSFEIRQLVIFHNAKGKSYRQIAAMLNMSKS
FT                 TVADIVRRFKNEDRIDSIPQMGQPQKLDARDKRKLIRKIKKDPTLSAPRLA
FT                 RELLNETGKKVHPQTIRRALKESGYNGRVARKKPYVNQQNRQKRLDFAREF
FT                 ITKDAIWWNDVIFSDESKFNVCGSDGRSMVWRKKNEEFTVTNIKPTVKHGG
FT                 GSVLVWGCISTFGPGELVFIDNTMDKYVYLNILKNNLRKSAETMGISNTFK
FT                 FYQDNDPKHKARIVQEYLLYNCPKVLQPPPQSPDLNPIENVWGELKRRIRS
FT                 TPISSKESLKRRLKEEWDGLRADYLKNIISSMPQRLKEVIKQNGYPTRY"
XX
SQ   Sequence 1626 BP; 559 A; 277 C; 351 G; 439 T; 0 other;
     cagtgaataa ctttaatatt cggacactaa gatattttta gtttgctgcg ttataactgt        60
     attctgaaca aacaaaaata taatataacc aaatattata tgaaggtaca tgtcttgtaa       120
     ataacagtat gaacgttgtt tacataacgt aaaacagttg ttaaagaatg cgattaaaat       180
     aaaccactct tcgatggtca cgttacttta atatccggac agatggcagt gtcgcacttg       240
     tcaccgttca cgccggggtg agtaggcctg cttctagtca gaaggcaggt gtgtgtttac       300
     aagcgcggtc gactgtccag acggtacgat gccacgcaaa gctaatacca gctttgagat       360
     acgacaactt gtgatttttc acaatgcgaa aggaaaatca tatcgacaaa ttgctgccat       420
     gctcaacatg agtaagagta ctgtggcaga tattgtcagg cgtttcaaaa acgaggaccg       480
     tatagactcc ataccacaaa tgggccagcc acagaagttg gatgctcgtg acaagaggaa       540
     gctaatacga aaaataaaga aggatcctac actcagtgca ccgagattag cacgtgagct       600
     tctaaacgag actggcaaga aggtacatcc tcaaacgatt cgcagagcat tgaaagaaag       660
     tggatacaat ggaagagtgg ctaggaagaa accgtatgtg aatcaacaga atcgacagaa       720
     aagattggac tttgctaggg agtttattac gaaggatgca atttggtgga atgacgtcat       780
     tttttccgac gaaagtaaat ttaacgtttg tgggtcggat ggacgaagca tggtgtggcg       840
     gaagaagaat gaggaattta cagtcacaaa tattaaacca actgtaaagc atggaggtgg       900
     cagcgtcctt gtctggggct gtatatcgac atttggaccg ggcgaattgg tgttcatcga       960
     caatactatg gacaaatatg tctatttgaa catattaaag aacaatttac gaaaaagtgc      1020
     tgaaaccatg gggatatcaa acaccttcaa attttaccag gacaatgacc cgaaacataa      1080
     ggctcgcatt gtgcaggaat atttgttgta caactgcccc aaagtcctac aaccaccacc      1140
     tcagtcacca gatctcaacc cgattgagaa tgtgtgggga gaactgaagc gacgtattag      1200
     aagtacacca atatcttcca aagaaagtct gaagcgtcga ctaaaagaag aatgggacgg      1260
     tctacgtgcg gactatttaa aaaatatcat tagcagtatg ccgcagcgtt tgaaagaagt      1320
     gataaaacag aatggctacc caacaagata ttgaaacatt tattttccat aaaattttgt      1380
     cttgaaatac ttagttctgc aaagtgtccg aatattaaag taacgtgaat ataggaccga      1440
     gttgtattta aattgtatta ttaaggaagt tatgtaagtt atcttaataa aatttatatt      1500
     attacttaca agacacatca cgtaatgtaa taattggtta tatgttttgt ttgttttgtt      1560
     ataaataaag ttatgatgtt ccaagattga aatatcacag tgtccgaata ttaaagttat      1620
     tcactg                                                                 1626
//
ID   Mariner-4_MMo repbase;    DNA;    INV; 1569 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1569
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6266-6266 (2021).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1325
FT                 /product="Mariner-4_MMo_1p"
FT                 /translation="MHNFTIICVSSFVASVTINNHLVQLLCLVPVLISFNM
FT                 XGSRRHMDLETATRAVVLLQEGESQRSVAMRLGVSRRAIRNVWNRYEETGS
FT                 VARRHGSGRNRVTTTQEDRYIRLIARRERTVTARILQNRLRQATGTRVSDQ
FT                 TIRNRLHEDAQWSRRRVIRLKLTRAHRAARLRFAREHLDWTMDNWKTVLFT
FT                 DECKVKFLSDDRRVRVWRRQGERFIEPCIRGTDRFGGPSVMIWGGISLMGK
FT                 TELVILNEGSVTAASYVEQVIRPHVIPFSQRVGNNFILMQDNARAHTARTT
FT                 QRVLSDAHVSVLLWPAMSPDLNPIEHLWDQLKRRLKENYSEVNSXLELVNA
FT                 LKQIWERIPNENVTHLIESVPDRLRACIQSRGGATRY"
XX
SQ   Sequence 1569 BP; 478 A; 289 C; 353 G; 446 T; 3 other;
     tagggcccac tacgagttat ttacaatatt gataattatc ttacttaaac gttaatgctt        60
     aatggattcn agtgtttaaa cataacgttg acatgtttat gcattcgtat cgatgttaag       120
     aatagcaatt tgaatgttat tcttaagtgg gtagacaaaa aacttaagtg cttagaattc       180
     accctatgca caatttcaca atcatttgtg tttcgagttt cgtcgcaagc gttacaatta       240
     acaatcatct tgttcaactg ttgtgtttag ttccggtatt aatctcgttc aatatgnctg       300
     gttctcgtcg tcatatggac ttggaaaccg ctacaagggc ggttgttttg ttacaagagg       360
     gagaatcaca gcgatctgtt gcaatgcgtc ttggtgtttc acgacgggct atccgaaatg       420
     tgtggaatcg atatgaagag actggcagtg tcgctaggag acacggatca ggaagaaatc       480
     gagttacaac cacccaggaa gatcggtata ttcgattaat tgcacgtcga gagcgcaccg       540
     ttaccgcgcg catcttacaa aatcggttac ggcaagctac tggtacacgc gtaagtgatc       600
     aaaccattcg caacagacta catgaagatg cgcaatggtc aagaagacgt gttattcgac       660
     ttaaacttac gagggctcat cgtgcagcgc gcttaaggtt cgcacgtgag catttagatt       720
     ggacaatgga caactggaag acggtactct ttacagatga gtgtaaagtt aagtttttga       780
     gtgatgatag acgtgtacgc gtgtggagaa gacagggaga acgatttata gaaccatgca       840
     tccgtggaac tgaccgtttt ggaggaccaa gtgtgatgat atggggtggg ataagtttga       900
     tgggtaaaac ggagctggta attttaaatg agggctctgt tactgctgct agctacgtcg       960
     agcaggtaat cagacctcat gtcattccat tttcacagcg tgtgggcaat aatttcatct      1020
     tgatgcaaga taatgctcgc gcgcatacag cccgtaccac acaacgagta ctctctgatg      1080
     cgcatgtctc tgttttgcta tggcctgcga tgagtcccga cctcaatccg attgagcatt      1140
     tatgggatca attgaaaaga cgtctcaaag agaactacag cgaggttaac agcnaactgg      1200
     aactcgtaaa tgctttgaaa cagatttggg aaagaatacc taatgaaaat gtaacccatc      1260
     tgatagagag tgttccagac agacttagag cgtgcataca gagcagagga ggtgctacgc      1320
     gttattaaac gccatcgatt ggcccaattt tagggatcaa gcaatgttca agaaaattat      1380
     acgtcgctct ttattagtat taatttttca aaaaaattaa tattgtgcat aacttcgtca      1440
     aaataaagaa ttatcaccag gtgttgagtt taaatcactt aataaacctt gttttaaata      1500
     aacctatcca taaaaaatac atatttctca aaattttcat ttaatagcag ataaacaagg      1560
     tgggcccta                                                              1569
//
ID   Mariner-4_PBa repbase;    DNA;    INV; 4132 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   06-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4132
RA   Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 616-616 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. ~1900 bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           2260..3339
FT                 /product="Mariner-4_PBa_1p"
FT                 /translation="MNDMAVYTNEEYYDMMMVLGECQGQYHVAARRYVELY
FT                 PNRARHPRPSVILEAAQRLYETGSVLPKRKDTGRHRVARNLRNVETILRAV
FT                 EQEPETSIRDIAREHELSYSTVQRILKEEKLHAYHYTRVQHLRQEDYPRRK
FT                 RFCENFLRRVDEDREFPSRVIFSDESLFTREGILNSHNMHMWDDENPRAIR
FT                 LRNYQVRWKLNVWAGIMGTKILGPVILPERLNSASYLEFLSENLPDFLEEI
FT                 PLLNRNKIIFQQDGAGPHNARIVTDFLNQQFPGRWMGRYGPIRWPARSPDL
FT                 NPLDFFLWGYCKEIIYRQLPENVEELNNKLHHAIWSIDNEVMEKTQENLLK
FT                 RMRACIRMDGGHFEHLL"
XX
SQ   Sequence 4132 BP; 1285 A; 801 C; 777 G; 1269 T; 0 other;
     taataagcca ggaactattt tctttaataa attgtatcgc gatcaatact ttcacagtct        60
     ttcactgact tgatctcact tgatactcac acacttgatc gatagaatga cttatttacg       120
     aacgaattta ttagtttgtt attatcaatc gctatcgatt aattattcgg tgattaaaaa       180
     tgacttgaaa gaaagaaata cacattacat gtaatcacag taatctatca gaagttctct       240
     tttataaatt gtcaacatgt tcacggattt actcacgcac ttgatcgata aaatcattta       300
     tgaacaaatc tatcgggtca ctactattaa tcgccactgg ttaattatcc cgccaattga       360
     aaattattac aaaaaacgcg ttacatacac agcgcacgta acccgtcgcg gactctgctc       420
     gatgacaaca atcagacaga ttatgttctt agtgcagtaa agtgcattaa ttcgccaagt       480
     gataataacg atctaactta tcgacctaat gtaatgtaaa tcagatcgat aagtcagcct       540
     attatcatga tgcagcgcgt taatgaccga tagtgaaacg cttcgaacgc ttcgtaatac       600
     caagtaataa tagataagtt cgatagataa tatcggcagg taatgtccac ctgtcgaaca       660
     taattgattt gattttttgt tgattttttt tttaataatt tgtgaactcg aagagaatgt       720
     ccctcgaaat aaaatatttg gttgccctga aaagggcaga taaattatta tagaagactt       780
     cttttctttt cataataaat gttcgaaatg tccgccgtcc attctgatgc aagctctcat       840
     gcgtttcagt aaattttctt gggttttctc cataacttcg ttgtcgattg accaaatggc       900
     atggtgaagt ttgttattta gttcttcgac attctcggga agctgtctgt aaatgatttc       960
     cttgcagtat ccccacaaga aaaaatctaa tggattgagg tctggggatc ttgcaggcca      1020
     acgtatcggt ccataccggc ccatccaacg accaggaaat tgctgattta aaaagtctgt      1080
     gactattctg gcgttatgtg gaccagcacc gtcctgttga aatataattt tatttctgtt      1140
     taataatgat atatctcttc caaaaagtcc ggcagatttt ctgataaaaa ttccaaatac      1200
     gatgcgctat ttaatctttc tggaagaata actggaccca atatttttgt acccataatc      1260
     ccagcccaga cgtttagttt ccaacgaact tgataatttc tgagtcgtat cgctcgagga      1320
     ttctcgtcgt cccacatatg catattatgc gaatttaaaa ttccttctcg tgtgaacagc      1380
     gattcatcgc tgaatattac acgagaagga aattctcgat cttcgtctac tcttcttagg      1440
     aaattctcgc agaatctctt tctccgagga tagtcttctt gtcgcaaatg ttgcacgcga      1500
     gtataatgat aggcatgtaa tttttcttct ttgagtattc tttggacggt ggaataagat      1560
     aattcgtgct ctcgagcaac gtctcgaata ctagtttcag gtttcttgct caacagcacg      1620
     aaggattgtt tccacgtttc gtaaatttct tgcaacacga tgtctgccag tgtcctttct      1680
     ttttggtaac acgcttccgg tttcatataa tctttgagcc gcttcaagta taacactagg      1740
     tgtcttgctc ggtttggata taattcgacg tatcttctcg cagcaacgtg atattgccct      1800
     tgacactcgc caagtaccat catcatgtcg taatattctt cattcgtgta aactgccata      1860
     tcgttcatat cggcgacgga ccccgacgtc ccattcgacg gagggggcgg agaggggaca      1920
     tcgatccccc acgaacaccg tataaataag gtgaaccgat cgatacttca atcaataaac      1980
     cgtcgactgt aggacattct cagagcgaca tcgagacttc aatcaacaat tctccgatta      2040
     ttaaaacgtt cttatcagaa cgacatcgag atttcgatca acaatcctcc gattattaaa      2100
     acgttcttat cagagcgaca tcgatacttc ctcaataatt ctttgactat tagaacgtcc      2160
     ttgtcaggac gatatcaaca atctttcgat ttttagaacg ttcttgtcag gacgatatcg      2220
     atacctcact cttttgatta ttaaaacatc gttgacaaca tgaacgatat ggcagtctac      2280
     acgaatgaag agtattacga catgatgatg gtacttggcg agtgtcaagg gcaatatcac      2340
     gttgctgcga ggagatacgt cgaattatat ccaaaccgag caagacatcc aagacctagt      2400
     gttatacttg aagcggctca aagattatat gaaaccggaa gcgtgttacc aaaaagaaag      2460
     gacactggca gacatcgtgt tgcaagaaat ttacgaaacg tggaaacaat ccttcgtgct      2520
     gttgagcaag aacctgaaac tagtattcgg gacattgctc gagagcacga attatcttat      2580
     tccaccgtcc aaagaatact caaagaagaa aaattacatg cctatcatta tactcgcgtg      2640
     caacatttgc gacaagaaga ctatcctcgg agaaagagat tctgcgagaa tttcctaaga      2700
     agagtagacg aagatcgaga atttccttct cgtgtaatat tcagtgatga atcgctgttc      2760
     acacgagaag gaattttaaa ttcgcataat atgcatatgt gggacgacga gaatcctcga      2820
     gcgatacgac tcagaaatta tcaagttcgt tggaaactaa acgtctgggc tgggattatg      2880
     ggtacaaaaa tattgggtcc agttattctt ccagaaagat taaatagcgc atcgtatttg      2940
     gaatttttat cagaaaatct gccggacttt ttggaagaga taccattatt aaacagaaat      3000
     aaaattatat ttcaacagga cggtgctggt ccacataacg ccagaatagt cacagacttt      3060
     ttaaatcagc aatttcctgg tcgttggatg ggccggtatg gaccgatacg ttggcctgca      3120
     agatccccag acctcaatcc attagatttt ttcttgtggg gatactgcaa ggaaatcatt      3180
     tacagacagc ttcccgagaa tgtcgaagaa ctaaataaca aacttcacca tgccatttgg      3240
     tcaatcgaca acgaagttat ggagaaaacc caagaaaatt tactgaaacg catgagagct      3300
     tgcatcagaa tggacggcgg acatttcgaa catttattat gaaaagaaaa gaagtcttct      3360
     ataataattt atctgccctt ttcagggcaa ccaaatattt tatttcgagg gacattctct      3420
     tcgagttcac aaattattaa aaaaaaaatc aacaaaaaat caaatcaatt atgttcgaca      3480
     ggtggacatt acctgccgat attatctatc gaacttatct attattactt ggtattacga      3540
     agcgttcgaa gcgtttcact atcggtcatt aacgcgctgc atcatgataa taggctgact      3600
     tatcgatctg atttacatta cattaggtcg ataagttaga tcgttattat cacttggcga      3660
     attaatgcac tttactgcac taagaacata atctgtctga ttgttgtcat cgagcagagt      3720
     ccgcgacggg ttacgtgcgc tgtgtatgta acgcgttttt tgtaataatt ttcaattggc      3780
     gggataatta accagtggtg attaatagta gtgacccgat agatttgttc ataaatgatt      3840
     ttatcgatca agtgcgtgag taaatccgtg aacatgttga caatttataa aagagaactt      3900
     ctgatagatt actgtgatta catgtaatgt gtatttcttt ctttcaagtc atttttaatc      3960
     accgaataat taatcgatag cgattgataa taacaaacta ataaattcgt tcgtaaataa      4020
     gtcattctat cgatcaagtg tgtgagtatc aagtgagatc aagtcagtga aagactgtga      4080
     aagtattgat acgcgataca atttattaaa gaaaatagtt cctggcttat ta              4132
//
ID   Mariner-4_RPr repbase;    DNA;    INV; 1326 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 20.10, Created)
DT   02-JAN-2012 (Rel. 20.10, Last updated, Version -1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1326
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3250-3250 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..1261
FT                 /product="Mariner-4_RPr_1p"
FT                 /translation="MMASLSEQRAALKFCFLLGKNAAESVLMLKTAYKDDA
FT                 MGKTQVYEWFTRFKNGDMSIDDXPRSGRPSTARIDGNVEKIRERVFTDXRQ
FT                 TIDQLSESSGLSWSSVQRILTEDLGMKRVAAKFVPRVLTDNQKEHRVETCR
FT                 ALKQQLETDPDFLSKVITGDESWCYGYDPETKQQSSQWKTSSSPRPKKCRQ
FT                 VKSNIKTMLICFFDAKGVVHSEFVPPGQTVNQTLYLEVLKRLRNSVRQKRP
FT                 DLWQTGDWFFHHDNAPAHTAISVTQFLAKNGMVPLPHAPYSPDLAPCDFFL
FT                 FPRMKKGMKGHRFDNIEEVKKKTKKELSAISKDDYKKCFEQWKHRWDKCIS
FT                 CNGEYFEGDKVVL"
XX
SQ   Sequence 1326 BP; 381 A; 268 C; 305 G; 370 T; 2 other;
     tacgaggggg tacccaaaaa taaccggaat tgcgttgccg cgcatggagc ttatgtagta        60
     cgcatttctg ccgctagacg tgtatagcgc aattccttgc cagttcagtc ctgcctgtgt       120
     tgtctgcctg gcttgttctg ttcatctgca gtgattgttt taccagcgct gttttgttct       180
     tttttcgttt tttatgatgg caagtttaag tgaacaacgt gcagctctga aattttgttt       240
     tctactcggc aaaaatgctg ctgaaagtgt tttaatgttg aaaacagctt acaaagatga       300
     cgctatggga aaaactcaag tatacgagtg gtttactcgg ttcaaaaatg gcgacatgtc       360
     gattgatgac xaacctcgtt ctggacgtcc atcaactgcc cgaatcgacg gaaatgttga       420
     aaaaattcga gagcgggtgt tcacggacxg tcgacagaca attgatcaac tgtcagagag       480
     tagtgggtta tcttggagct cggttcagcg aattttaacg gaagatttgg ggatgaaaag       540
     ggttgctgcc aagtttgttc ctcgagttct gactgacaat caaaaagaac atcgagttga       600
     aacatgtcgt gctttgaaac aacagcttga aactgatcca gactttctgt caaaggtcat       660
     tactggtgat gagtcatggt gctatggtta tgacccagaa acaaagcaac agtcgagcca       720
     atggaagacg tcatcttcac cccgaccaaa aaaatgtcgt caagtcaagt caaacatcaa       780
     aacaatgctg atttgctttt ttgatgccaa aggcgtagtc cattcagagt ttgtcccccc       840
     aggtcagacc gtcaatcaaa ccttgtattt ggaagttttg aaaagattgc gcaatagtgt       900
     tcgccaaaaa agacccgatt tgtggcaaac aggagactgg ttcttccacc acgacaatgc       960
     acctgcacac acggccatct ctgttacaca gtttttggct aaaaatggca tggttccgct      1020
     gccccacgca ccttactcgc ctgacctggc tccgtgcgac tttttcttat ttccacgcat      1080
     gaaaaagggc atgaaaggtc accgatttga caacattgaa gaggtcaaga aaaaaacgaa      1140
     gaaggagctg tcagccattt ctaaagatga ctacaaaaaa tgtttcgaac agtggaagca      1200
     ccggtgggac aaatgtatta gttgtaatgg agagtatttt gaaggggata aggttgttct      1260
     gtaaaaaatt tgtaaataaa tagcttttaa aaaataattc cggttttttt tgggtacccc      1320
     ctcgta                                                                 1326
//
ID   Mariner-4_SIn repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   20-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-4_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1296
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 321-321 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-4_SIn_1p"
FT                 /translation="MEKEQYRSVIRFLFLEGKSRSEIKERLDAVYGDSSPS
FT                 MATVKNWFNEFQRGRTSVFDEPRPGAPKMATTEDNVTKIHDLVLADRRLKV
FT                 REIAETVGISKDRVGHILHEILGMRKLSARWVPRLLTPDNKRNRETTSEQC
FT                 LTLFKRNPKEFLRRFVTVDETWIHWYTPETKEQSKQWTSPGERAPKKAKTV
FT                 LSAGKVMATVFWDSQGVIYIDYLEKGKTVTGLYYAELLGRFDAELQKKRPH
FT                 LAKKKVLFHHDNAPAHTSAVATAKLVELHYELLPHPPYSPDLAPCDFFLFP
FT                 NLKKSLAGQKFESNEEVIAATEAYFADLEKTYFSDGLKKLEHRWVKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1296 BP; 335 A; 312 C; 342 G; 307 T; 0 other;
     tacgagggcg gtccgataag tacttagcct caccgcccga tggtgccagt atcgcaagag        60
     agatttacta tcgtgtagta cattctcgta gacggctact gtcaaaattt cagccgaatc       120
     ggactcgtag ttttgttttg accgcgtgtg gaagcgggcg tgtccgcgga ttttagaaaa       180
     atggaaaaag agcaatatcg gtcggtgatt cgattcttgt ttttggaagg gaaatcgcgc       240
     agcgaaatca aagagcgctt ggatgctgtg tacggtgact cttctccttc gatggcgacc       300
     gtcaaaaatt ggtttaacga gtttcaacgt ggtcgcacgt cggtttttga tgagccacgc       360
     ccaggtgccc cgaaaatggc taccacggag gataacgtga caaaaatcca cgatctcgta       420
     ttggcagacc gccgattgaa ggtgcgcgag atagctgaaa cagtaggcat ctcaaaagac       480
     cgcgtgggtc atatcctgca tgaaattttg ggcatgagaa agctgtcggc gcgatgggtg       540
     ccgcgtttgc tcactccgga caacaagcgc aaccgtgaga ccacttcaga gcagtgtttg       600
     acgctgttta agcgcaatcc gaaggagttt ctgcgtcgtt tcgtgaccgt cgacgaaaca       660
     tggatccact ggtacacacc agagaccaag gaacagtcga aacagtggac ttcacccggc       720
     gaacgtgctc cgaagaaggc gaagactgtc ctatcggccg gaaaggtgat ggccaccgtt       780
     ttctgggatt cacaaggtgt gatctacatc gactacctgg agaagggcaa aacggtcaca       840
     gggctctact atgccgaatt attgggccga ttcgacgccg aattgcagaa aaaacggccc       900
     catttggcga agaaaaaagt gctcttccac catgacaacg caccggctca cacctccgcc       960
     gtcgccacgg ccaaattggt cgaattgcac tacgaactgc tgccccatcc accgtattct      1020
     ccagatttgg ccccgtgcga cttttttttg tttccaaact tgaaaaagtc actcgccggg      1080
     cagaaatttg agtcgaatga ggaggtcatc gccgccacgg aggcctactt tgcagacctc      1140
     gagaaaacgt atttttcaga tgggttaaag aagttggagc atcgctgggt caagtgtatc      1200
     gagctaaaag gagactatgt tgagaaataa atcgccactt ttccaaaatt ttcgtttttc      1260
     ttttgtaggc taagtactta tcggactgcc ctcgta                                1296
//
ID   Mariner-50N1_HSal repbase;    DNA;    INV; 903 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-50N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-903
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 890-890 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 903 BP; 272 A; 169 C; 198 G; 263 T; 1 other;
     ctactgtgat caaaaaataa ggtgaatttt tcatttaaac ttcgcgggta ctataaaatc        60
     atgaaattat tttttggtgg gttggtagca ctgtctttga catctatgca gagtttcatg       120
     tcaatatatt caattgctgc agagctatac gtgtttttgt aaacatacaa aagtgagttt       180
     ttcgattttt actatgtctg attttgttga gcaaagaatt tgcattaaat tttgtttgcg       240
     gaatgaatat tctgccgcgg aaacgttgag gatgttgcag aaggcctttg gtgataaggc       300
     tatgtcgcaa aaaaatgttt acaagtggta caaagacttc aaagaaggcc gagaacgagt       360
     tcaagacgaa cagcgccccg gacgaccatc aacatctacc gatgaaagcc acgtcaagga       420
     aatcaaagat ttgctgttcg aggawcgtca tttgagtgtt atgcgtcgtt tgcgtgaagc       480
     tattcacctc aagaggccag aattatgggc agacaattct tggtttttgc accacgataa       540
     tgcaccgtcc cacactgcat tggttcttcg agaacatttc gccaaaaatt cgacccatat       600
     cgttccacaa ccaccgtatt cgcctgattt agcaccgtgc gacttctggc tgttcaacaa       660
     actcaaaaga ccgctccggg gacaccgttt cgactcgatt gaggagataa aagccgaatc       720
     gaagaaagta ttgaaggcca tcccggaaaa agacttctct gactgtttcg aggattggaa       780
     aaaacgttgg cataagtgca ttgtgtcgga cggggagtac tttgaaggcg atgaaattga       840
     tttggaagaa taaataaaga tttttcattt tataaacaaa ttcaccttat tttttgatca       900
     cag                                                                     903
//
ID   Mariner-50_HSal repbase;    DNA;    INV; 1311 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-50_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1311
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 891-891 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..1255
FT                 /product="Mariner-50_HSal_1p"
FT                 /translation="MSDFVEQRICIKFCLRNEYSAAETLRMLQKAFGDKAM
FT                 SQKNVYKWYKDFKEGRERVQDEQRPGRPSTSTDESHVKEIKDLLFENRRLT
FT                 IRDLADATGISFGSTQTILKDVLCLKRVKSRLVPKTLNFLEKKRRVDICET
FT                 MISDYQDVMKRIITGDETWIYAYDPETTDQSSEYRAKGEPRPKKPRQSRSK
FT                 IKVMLTVFFDYRGVVHYEFLPPGQTVNKEYYLSVMRRLREAIRLKRPELWA
FT                 DNSWFLHHDNAPSHTALVLREHFAKNSTHIVPQPPYSPDLAPCDFWLFNKL
FT                 KRPLRGHRFDSIEEIKAESKKVLKAIPEKDFSDCFEDWKKRWHKCIVSDGE
FT                 YFEGDEIDLEE"
XX
SQ   Sequence 1311 BP; 404 A; 257 C; 281 G; 369 T; 0 other;
     ctactgtgat caaaaaataa ggtgaatttt tcatttaaac ttcgcgggta ctataaaatc        60
     atgaaattat tttttggtgg gttggtagca ctgtctttga catctatgca gagtttcatg       120
     tcaatatatt caattgctgc agagctatac gtgtttttgt aaacatacaa aagtgagttt       180
     ttcgattttt actatgtctg attttgttga gcaaagaatt tgcattaaat tttgtttgcg       240
     gaatgaatat tctgccgcgg aaacgttgag gatgttgcag aaggcctttg gtgataaggc       300
     tatgtcgcaa aaaaatgttt acaagtggta caaagacttc aaagaaggcc gagaacgagt       360
     tcaagacgaa cagcgccccg gacgaccatc aacatctacc gatgaaagcc acgtcaagga       420
     aatcaaagat ttgctgttcg aaaatcgtcg attgacaatt agagaccttg ctgatgctac       480
     gggcatttca tttggatcaa cccaaaccat tttaaaagat gttttgtgcc tcaaacgcgt       540
     caaatctcga ttggttccaa aaacactcaa ttttttggaa aaaaagcgtc gcgttgacat       600
     ctgtgaaaca atgatttctg actaccagga cgtcatgaaa cgcatcatta cgggagatga       660
     gacttggatc tatgcatacg acccggaaac aaccgaccaa tcgagcgaat atcgtgcaaa       720
     aggtgaacca agaccgaaaa aaccgcgcca aagtcgctca aaaatcaagg tcatgttgac       780
     agttttcttc gattatcgcg gtgttgtgca ttatgaattt cttccgccag gccaaactgt       840
     taacaaggaa tattatttga gtgttatgcg tcgtttgcgt gaagctattc gcctcaagag       900
     gccagaatta tgggcagaca attcttggtt tttgcaccac gataatgcac cgtcccacac       960
     tgcattggtt cttcgagaac atttcgccaa aaattcgacc catatcgttc cacaaccacc      1020
     gtattcgcct gatttagcac cgtgcgactt ctggctgttc aacaaactca aaagaccgct      1080
     ccggggacac cgtttcgact cgattgagga gataaaagcc gaatcgaaga aagtattgaa      1140
     ggccatcccg gaaaaagact tctctgactg tttcgaggat tggaaaaaac gttggcataa      1200
     gtgcattgtg tcggacgggg agtactttga aggcgatgaa attgatttgg aagaataaat      1260
     aaagattttt cattttataa acaaattcac cttatttttt gatcacagta g               1311
//
ID   Mariner-50_LMi repbase;    DNA;    INV; 1207 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-50_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1207
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 45-45 (2015).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 1207 BP; 345 A; 255 C; 269 G; 338 T; 0 other;
     cagggtgagt caaaagtcgc agtacaccct tttatttcaa aaactctgca ggaactggga        60
     aacctgaata ttccagtaag gtatgggtga ggtggtctat cttttacggt atgtaccgaa       120
     catgggcgcc atcttgaaat cggccatctt gaatctaagt caatttttta atggaaaggg       180
     ggtcgtgtga tatatcaaat aacatcagca ttttctgaca agttcattcc tgtaaacaga       240
     ttcgacgtag cagttatggt tcaaaagtta caacaagatc cctcttttgc acaaggtatc       300
     ttgttcagtg atgaggcaaa ctttttgtca gtggtgaagt caaccgtcac aaccacagat       360
     actggagtga ccagaatcca cactggatgg aaccttcaaa ggtagttggt gacgtaaagg       420
     ttatggtgtg gtgtggaata tggggtaccc gtgtaattgg acccattttc attgaccaga       480
     acctaaatgc tcaaagctac ctggaaatgc tgcaagaagt ggtgtttccc ttagttctga       540
     atgaagatgc agctttccct cttactttca acaggatggg gctccaccac actacggagc       600
     agttgttcgt cagtggttag atggtcaatt tcctggtcat tgggctgacg tggttctgtg       660
     gaatggccac ccagatcacc tgatctcaca ccacttttat ctgtggggcc atttaaagca       720
     aatcgtatat gcagagaaaa taagaaacag acaccatctc gagcaacgca ttgaagaagc       780
     gtgtgccagc atttctgcgg aaatccttct gcgagtgcac gacgattgga ttcagcgcct       840
     tcaaatgtgc gttgaccaag agggacagca tgttgaacac attaaatgac tgttctttat       900
     ggagaacagt ccagtctgta cctccaaaca aaatgtgttg taacttttga accataactg       960
     ctacgtcgaa tctgtttaca ggaatgaact tgtcagaaaa tgctgatgtt atttgatata      1020
     tcacacgacc ccctttccat ttaaaaaact tagattcaag atggccgatt tcaagatggc      1080
     gcccatgttc ggtacatacc gtaaaagata gaccacctca cccatacctt actggaatat      1140
     tcaggtttcc caattcctgc agagtttttg aaataaaagg gtgtactgcg acttttgact      1200
     caccctg                                                                1207
//
ID   Mariner-51_HSal repbase;    DNA;    INV; 1578 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-51_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1578
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 892-892 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(275..868,872..1303)
FT                 /product="Mariner-51_HSal_1p"
FT                 /translation="MAKTCGARNVDERQRKAIVEGRKQGRTHKELAQQFGI
FT                 SKSAVTKLLKRLKVQEGSVNKKTRGRPRCTTSLVDRNILRTSRSNPHLTAS
FT                 DIAKEILTPGQSNPSVRTIRRRLQDAGLHGRRPVKKPFISVKNRKARVEWS
FT                 KAHLNWTSRQWSDVLWSDESKFMLFGSDGIKWIRRPEGKRFDPKYQLPTMK
FT                 HGGGSVIVGTFSAKGMGPLHKIEGIMDQTVYINILQNVMLPYAKRFLGRGF
FT                 IFQQDNDPKHRAAKVQEWFRRHRVTLMDWPSQSPDLNIIESLWEELERRLA
FT                 GKRATNAAQKFSQLEEEWKKIPQATIDALIDSMPRRCQAVIDAKGFATKY"
XX
SQ   Sequence 1578 BP; 470 A; 322 C; 337 G; 448 T; 1 other;
     cagtaccggc caaaaatata tcaccttcag ggtttttgas cataacttcc ttcacagtaa        60
     agaaactaga ttcaaatttt tacagcagat agctggtatc atgtacactt tgtgtgtaat       120
     gtatgagaaa atttggcaac atatactatg atattcaaag atatttattg attgtcccaa       180
     aatcgtccgt tgacaacctt tgtgtactcg ttatgtttat gtattctgtc gctatttcaa       240
     cacggctgta aacattagtt tagtatctta gaagatggcg aagacttgtg gtgctcgaaa       300
     tgtggacgaa cgacaacgga aagctatcgt agagggtcgc aaacaagggc ggacgcataa       360
     agaactcgcc cagcagtttg gcatttccaa atcagcggtg accaagttgc ttaagcgttt       420
     aaaggttcag gaaggttctg ttaataagaa aacacgtggc cgaccgcgtt gtactacttc       480
     tctcgtcgat cgcaacattt tgcgtacatc tcgtagcaac ccacatctca cggcgtcgga       540
     cattgctaaa gaaatattga ctccaggaca gtctaatcca tctgtacgta ccatacgccg       600
     tcgcctgcaa gacgcaggac tacatggtcg acgacctgtg aagaagccat tcatttctgt       660
     gaagaatcgg aaggcgcgag tagagtggtc caaagcacat cttaactgga catcacggca       720
     atggtctgac gttctctgga gcgacgaaag taagtttatg ctgtttggta gtgacggaat       780
     aaagtggatt cgtcgtcctg aaggcaaacg ctttgacccc aaataccaac ttcctacaat       840
     gaagcatgga ggcggttcgg ttatagtgta gggtactttt tccgcaaaag gaatgggtcc       900
     ccttcataaa atcgagggca tcatggatca gacagtgtac ataaacatcc tccagaatgt       960
     aatgcttcca tatgcaaaac gtttccttgg tcgcggtttc atcttccaac aagacaatga      1020
     tccgaaacat cgagcagcta aagtgcagga gtggttccga cgccatcgcg taactctcat      1080
     ggattggcca agtcaatccc ccgatttaaa tattatagaa tcgttgtggg aagagctgga      1140
     gagacgtttg gcaggaaagc gagctacgaa tgcggcccag aaattctccc aacttgaaga      1200
     agaatggaaa aagatccctc aagctacaat cgatgcactc attgattcca tgcccagacg      1260
     ttgtcaagct gtaatcgatg caaaaggttt tgctacgaaa tattagagtt atttcattta      1320
     aattatgaat ctggtgctcc tctgttgaca ttgaacatag ttatggctat tcaaagttta      1380
     ctattcattt taacgtactt tggacatttg aaataaagtt atttttttca cgagttgttt      1440
     atattatttg attaaaagta ctttgttcga taagctgcac ctgttatcaa aacatgttat      1500
     gacctaatac atatccatac actttaaacc aagttatgct caaacatctt aaaggtgata      1560
     tatttttggc cggtactg                                                    1578
//
ID   Mariner-51_LMi repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 20.01, Created)
DT   06-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-51_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1295
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 46-46 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-51_LMi_1p"
FT                 /translation="MEKNEFRAVIKHFHLKGWTAAQIKSELDEVHVGSAPT
FT                 LKTIYFWINEFKRGRRSTEDGARSGRPVEVTTQETIDKVHDMVMEDRRLKV
FT                 REIANIVGISTERVHYILHEKLAMKKLCARWVPRLLTLDQKRKRKNISAQN
FT                 LTLFRRNPQDFLRRFITVDETWIHHYTPETKQQSKQWTKSGESAPKKAKTV
FT                 LSAGKVMATVFWDSQGIILIDYLEKGRSITGPYYAALLDRLKQELIEKRPR
FT                 LARKKVLFHQDNAPAHTAAIAMAKVHDLGFELVPHPPYSPDLAPSDFFLFP
FT                 NLKIWLGGKKFSSNEEVSAAVTDYFAEFDKAYFADGLKKLETRWTKCIALQ
FT                 GDYVEK"
XX
SQ   Sequence 1295 BP; 376 A; 265 C; 318 G; 336 T; 0 other;
     cgagggtggt ttgataagtc tggtaaattt gtatgaaaga gcgggaaatt ttcggaacct        60
     gcactgttgt tggtaagcct gatatttcca cggatattac agcaagtttc gaacggcagc       120
     tgttattagt tgattgttgg ctgccagctg aagtggtaac tgcgtagtta gttccttagg       180
     atggagaaaa acgaatttcg tgcggtcatt aaacattttc atttgaaggg ttggacagct       240
     gcacagatca aatccgagtt ggatgaggtc catgtgggtt ctgcaccaac attgaagacc       300
     atttactttt ggatcaatga gtttaaacgt ggtcggagaa gcacggaaga tggagcacgc       360
     tccggtcggc ccgttgaagt caccacacag gaaaccatcg ataaggtgca tgatatggta       420
     atggaagatc gaagattaaa agttcgcgag atagctaaca ttgtaggcat ctcaactgaa       480
     cgagtgcatt acatcctcca tgaaaaactg gccatgaaga agctctgtgc gcgatgggtg       540
     ccgcgcctgc tcactttgga ccaaaaacgg aaacgaaaga acatttctgc tcagaatctc       600
     acactgttca ggcgcaatcc acaggacttt ttgcgcagat tcataactgt ggatgaaact       660
     tggatccacc attacactcc agagaccaaa caacagtcca aacaatggac gaagagtggg       720
     gagagtgcac caaagaaggc gaagactgtt ttgtcagctg gaaaggtgat ggccactgtc       780
     ttttgggatt cccagggtat aatcctgata gattatttgg aaaaaggcag atccataact       840
     gggccctatt atgctgctct gctggatcgt ttgaaacagg aactaattga aaaacgtcca       900
     agattggcac ggaagaaagt gctgtttcat caggacaatg ctccagccca cacagcagct       960
     atcgcaatgg caaaagtgca cgacttggga ttcgaattgg ttcctcaccc accctattca      1020
     ccagacttgg ctccgagtga cttcttctta ttcccaaact tgaaaatttg gcttggtggg      1080
     aagaaatttt catcgaatga ggaagtgtcc gccgctgtga cagactattt tgcagagttt      1140
     gacaaagcct actttgccga tgggttgaaa aaattggaaa ctcgctggac caagtgtata      1200
     gccttgcaag gagactatgt cgagaaataa agtgagtttt cgcctttaaa acaatttttt      1260
     attctatttt taccagactt atcaaaccgc cctcg                                 1295
//
ID   Mariner-52N1_HSal repbase;    DNA;    INV; 1265 BP.
XX
AC   .
XX
DT   26-APR-2012 (Rel. 19.04, Created)
DT   26-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-52N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1265
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 893-893 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1265 BP; 379 A; 280 C; 269 G; 336 T; 1 other;
     cagggtgtta gaaaagtctg gaaacggtca aatatctcga aaacgaaacg tttctgagaa        60
     aaatgtttcc aaccaaagtt gtagggtttt aaaagttcta ttgaatgatc atatccgttt       120
     gaccttgagt ggaggggtca aggcgaggtc aaggccaaca tgattttttt aaatggaaca       180
     ccccattttt tatcacacag tgttaaagat gacagcgaga cgtttccaaa acactacttg       240
     atgacctatt tttgttgaga attgtctgag ttatgagctt tagaatttac ggtgccgcca       300
     gcattagtat tatccaggat gtaccgcgtg gaggttgcat ggtcggactt tacacccctg       360
     tgtgtgtgtg tgtgtgcgtg tcagcaggga tgaggacctg tggtgcgtca ctcccgcagt       420
     ataatgactc agtagtggtg cgtsaatttt taactgatac tttcccaaac cgatggatag       480
     gaagacgtgg agaaatagag tggccctcta gatcaccaga tctttctcca ttggactact       540
     ttttatgggg gtatgttaaa aacaatgtgt acgcaacgaa acctgctaac ttggcagacc       600
     ttagggaacg catactgcac caagtaaatc ttatctcacc agaaatgaga cgaaacgttt       660
     taaatgaatt tcatctacga ttaggtcatt gtcaagcagc agacggaaga caatttgaac       720
     acttaattca gtaaaaaccc gtctacatac acacgcacgc gcgcgcgcgc gcgcacacac       780
     acacacacac acacacagca gagagggttt ggagtcatta aatactgcgg gagtgacgaa       840
     ccgcggggtc cttatctctg ctgacacaca cacacacaca cacacacaca cacacacagg       900
     ggtgtaaagt ccgaccatgc aacctccacg cggtacatcc tggataatac taatgctggc       960
     ggcaccgtaa attctaaagc tcataactca gacaattctc aacaaaaata ggtcatcaag      1020
     tagtgttttg gaaacgtctc gctgtcatct ttaacactgt gtaaacactg tgtgataaaa      1080
     aatgggtgtt ccatttaaaa aaatcatgtt ggccttgacc tcgccttgac ccctccactc      1140
     aaggtcaaac ggatatgatc attcaataga acttttaaaa ccctacaact ttggttgaaa      1200
     catttttctc agaaacgttt cgttttcgag atatttgacc gtttccagac ttttctaaca      1260
     ccctg                                                                  1265
//
ID   Mariner-52_HSal repbase;    DNA;    INV; 2567 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-52_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2567
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 894-894 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           977..2047
FT                 /product="Mariner-52_HSal_1p"
FT                 /translation="MVLTERERITILMMRGYGDRVRSFEQVATLFNDTYAD
FT                 REPISKSTVQKTVRRFEETGSVKDRPRSGRPKSATHFDKSLDVMQSFVENP
FT                 NSSIRKVAQATEVSTFSIHKIIMKEKWHPFKIKFTQELAECDFDRRNEFCD
FT                 EMMRRCDNDNTFLDNIIFSDEASFELNGTVNRQNCRYWSDENPHWMRDLHT
FT                 QYPQKLNVWAGFCERGIIGPFFIEGNLNANTYLDLLRNQIVPAIDNLFDGN
FT                 IQNIWFQQDGAPPHYAVVVRQFLTDTFPNRWIGRRGEIEWPSRSPDLSPLD
FT                 YFLWGYVKNNVYATKPANLADLRERILHQVNLISPEMRRNVLNEFHLRLGH
FT                 CQAADGRQFEHLIQ"
XX
SQ   Sequence 2567 BP; 770 A; 510 C; 549 G; 738 T; 0 other;
     cagggtgtta gaaaagtctg gaaacggtca aatatctcga aaacgaaacg tttctgagaa        60
     aaatgtttcc aaccaaagtt gtagggtttt aaaagttcta ttgaatgatc atatccgttt       120
     gaccttgagt ggaggggtca aggcgaggtc aaggccaaca tgattttttt aaatagaaca       180
     ccccattttt tatcacacag tgttaaagat gacagcgaga cgtttccaaa acactacttg       240
     atgacctatt tttgttgaga attgtctgag ttatgagctt tagaatttac ggtgccgcca       300
     gcattagtat tatccaggat gtaccgcgtg gaggttgcat ggtcggactt tacacccctg       360
     tgtgtgtgtg tgtgtgtgtg tgtgtgtcag cagagataag gaccccgcgg ttcgtcactc       420
     ccgcagtatt taatgactcc aaaccctctc tgctgtgtgt gtgtgtgtgt gtgtgtgcgc       480
     gcgcgcgcgc gtgcgtgtgt atgtagacgg gtttttactg aattaagtgt tcaaattgtc       540
     ttccgtctgc tgcttgacaa tgacctaatc gtagatgaaa ttcatttaaa acgtttcgtc       600
     tcatttctgg tgagataaga tttacttggt gcagtatgcg ttccctaagg tctgccaagt       660
     tagcaggttt cgttgcgtac acattgtaat aaattatttg taaattgtca ttagacttac       720
     aaatcatttg taggagctca tccttattct tcgataagga aggtagcaca gacgtgatct       780
     ccacatgtag tatccccaaa aaaacatgtc gacgggtttt tggttatcgg acccttcttt       840
     atcgaagaaa atttattaga tgctagatac tagatgcaga tcgtattcgt catacaagta       900
     acaaattact tgttcgtata tcaagtcaaa gtaatttctt ttgcaaagta agaaattacc       960
     ttcggtagtc gccaaaatgg tattgactga aagggaaaga attacaatat tgatgatgcg      1020
     aggatatggt gaccgcgtta ggtccttcga acaagtagcg actttgttta acgatactta      1080
     tgcagatcgt gaaccaattt caaagtctac agttcaaaaa actgtcagac gattcgaaga      1140
     aacgggatct gtcaaggacc gcccgcggag tggtagacca aaatcagcga cacatttcga      1200
     taaaagtttg gatgtgatgc aatcatttgt agaaaatcct aattcttcga taaggaaggt      1260
     agcacaggcg actgaagtta gtacattttc cattcataaa attataatga aagaaaaatg      1320
     gcatcctttc aaaataaaat ttactcagga gctagcggaa tgtgatttcg atagaagaaa      1380
     tgagttttgc gatgaaatga tgcgtcgatg cgataatgat aacacttttc ttgataatat      1440
     cattttttcc gatgaagctt ctttcgaatt aaatggaacg gtaaatcgtc agaattgccg      1500
     ctattggagt gacgagaacc ctcactggat gcgtgatctc cacacacagt atccccaaaa      1560
     actgaacgtg tgggcgggtt tttgcgaacg tggtattatc gggcccttct ttatcgaagg      1620
     aaatttaaat gcgaacactt atctagattt attgcgaaat caaatagttc ctgctattga      1680
     caatttgttt gacggaaata tacaaaatat ttggtttcaa caagatggtg caccgccaca      1740
     ctatgcagta gtagtgcgtc aatttttaac tgatactttc ccaaaccgat ggataggaag      1800
     acgtggagaa atagagtggc cctctagatc accagatctt tctccattgg actacttttt      1860
     atgggggtat gttaaaaaca atgtgtacgc aacgaaacct gctaacttgg cagaccttag      1920
     ggaacgcata ctgcaccaag taaatcttat ctcaccagaa atgagacgaa acgttttaaa      1980
     tgaatttcat ctacgattag gtcattgtca agcagcagac ggaagacaat ttgaacactt      2040
     aattcagtaa aaacccgtct acatacacac gcacgcggcg cgcgcgcgca cacacacaca      2100
     cacacacaca cacagcagag agggtttgga gtcattaaat actgcgggag tgacgaaccg      2160
     cggggtcctt atctctgctg cacacacgca cacacacaca cacacacaca ggggtgtaaa      2220
     gtccgaccat gcaacctcca cgcggtacat cctggataat actaatgctg gcggcaccgt      2280
     aaattctaaa gctcataact cagacaattc tcaacaaaaa taggtcatca agtagtgttt      2340
     tggaaacgtc tcgctgtcat ctttaacact gtgtgataaa aatggggtgt tctatttaaa      2400
     aaaatcatgt tggccttgac ctcgccttga cccctccact caaggtcaaa cggatatgat      2460
     cattcaatag aacttttaaa accctacaac tttggttgga aacatttttc tcagaaacgt      2520
     ttcgttttcg agatatttga ccgtttccag acttttctaa caccctg                    2567
//
ID   Mariner-52_LMi repbase;    DNA;    INV; 3214 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-52_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3214
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 47-47 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1029..1340,1333..1818,1685..2509)
FT                 /product="Mariner-52_LMi_1p"
FT                 /translation="MSRRPLLVRPNKGPIQKQTRENIRRQWGSNSGQCISN
FT                 PCATMYAMPTSDGNCIGRVVTLFLLVIGSSLGIVRMQSIFAGRVRVAAKVQ
FT                 GRRCGRAVTDVVVTHKHTSSGKMARHRYSFEEYADMHLAYGAAGQYAPAAR
FT                 DIYHARFPSRVIPCVNTFLAVDRRLRESGSFAVPNVDAGRERYIRNVQFEE
FT                 NVLEMVAATPSTSSRAIGTALGVSHVITTFLKNACKLHMAKCILLFVVTGF
FT                 ARCSIGRLTRRKPISVSPTEGARFGRMPANYTWQNVSFCLSLQVSHGVVLD
FT                 VLHDENLFPYHLQKVHDLVEEDYPSRYQYSVWYLNKCNENPHFAKMVLWTD
FT                 EACFTREGPFNSRNSHIWMDANPHGTYVKSYQHRFSVNIWAGIVGDFLLGP
FT                 VLLPPHLNGTTYLAFHENVLPLYLEDVPLAVRQGMWFQHDGAPPHFAFAVR
FT                 KHLDVLYPQRWIGRGGPFLWPARSPDLTPLDFYLWGHVKQIVYATPVDTTE
FT                 ELLARIILAFDEIRETFDFGKLAESMTQRCNACRQAGGGHFEQLL"
XX
SQ   Sequence 3214 BP; 885 A; 687 C; 729 G; 913 T; 0 other;
     cagggtggtc cgaaaatgtc tgaaatgctt gtcaggacgt tgtagggcag gttgtactga        60
     gacataaatg ttaagaaaaa aatttgatac gtcgcgccgt ttccgagtta tttagcttag       120
     aagttagcca atcacgtcgt ttggcgcgca gattcgaaca gcccgcaaga ggcagcgttg       180
     ccaaacgtat tctccatgtg gttgtctcac aaggagaaga cgcctactcg tcatcgccta       240
     attcgaatta tggtatatgc agttcatggc cagaaatgaa cgtgatagca ctgggagctc       300
     cagatggcca agcgtttagg aaaaaatagc atttcttgcg cgggtctgga acgctgtatg       360
     acacttaagt gaacgctgtc agcaagctgc ggttggtgtt gtgggaagaa gtcagatcgg       420
     taatcaatga tgcgatgaat gtgggttcga atcctagtat gggaaattat ttttaatttt       480
     tatatgtcaa tttatgcatt acttgcactg caaataaatg aaaattatgc acaatatatc       540
     gtatttatta atatttcata aaaaagacgt gaaaaggaaa ggcaatggaa tatttgttat       600
     tgcaaatcca tgtccaagac aggactgtat cacagcgtcg acgaggactc tggaaataac       660
     tttccgaaaa aggattgtaa ttgaagcgta caggacttcg tatttcgtta atttaatttc       720
     cagtagacct cgacagctgc acgcgagcat taggttcgtg gttccagtaa aatcggccaa       780
     ctggtcgttg tggataatag ttacggttgc caggaaacct acttgcagtc gcacattttt       840
     gcttgccttt ccttgttatc ccttttatga aatattaata aatacgatat attgatcata       900
     attttgactt atttgcggtg tacgtaatac ataaactgac atgaacaaaa taaaagtaaa       960
     cactcccaca cgcggattcg atcgtacgcc cctcgtgtgt tcaattgccg aactgtgttc      1020
     ttgccactat gagtaggcgt cctctccttg tcagaccgaa caagggacca atacaaaaac      1080
     aaacacgtga aaatattcga cggcagtggg gatcgaattc gggccaatgc atcagcaatc      1140
     cctgcgctac gatgtacgct atgccaacat ccgacggtaa ttgtatcggc cgtgtagtga      1200
     ccctttttct acttgtcatt ggatcatcat tgggaatcgt acgtatgcaa tcgatctttg      1260
     ccggaagagt tcgtgtagct gcgaaggtac aaggaaggag gtgcggtaga gcagtgacgg      1320
     acgtcgtcgt gacacacaag tagtggtaaa atggcccgtc atcggtactc cttcgaggaa      1380
     tacgcagata tgcatttagc ttacggcgct gcgggtcaat atgcaccagc tgcccgcgac      1440
     atctaccacg caagatttcc cagccgcgtt attccgtgtg taaatacctt tttagctgtt      1500
     gatagacggt taagggagtc tggaagtttt gctgtaccca atgttgacgc tggacgagaa      1560
     cgttacatac ggaacgttca gttcgaagaa aacgttctcg aaatggttgc tgcaacacct      1620
     agtaccagct cgagggccat tggtactgct ttgggagtaa gtcacgttat tactacattc      1680
     ttaaagaatg cctgcaaact acacatggca aaatgtatcc ttttgtttgt cgttacaggt      1740
     ttcgcacggt gtagtattgg acgtcttaca cgacgaaaac ctatttccgt atcacctaca      1800
     gaaggtgcac gatttggttg aagaggacta cccctctcgt taccaatatt ccgtgtggta      1860
     tttaaataaa tgtaacgaaa atccacattt cgcaaagatg gtgttgtgga cagacgaggc      1920
     atgtttcacc agagaaggac cattcaattc ccgaaacagc cacatttgga tggacgcaaa      1980
     tccgcatggc acttacgtta aatcctatca gcataggttt agcgtcaaca tttgggcagg      2040
     tatcgtaggc gactttttgt tgggtcccgt cctactccct ccccatttaa atggaacgac      2100
     gtatttagca ttccatgaaa acgtccttcc gctatactta gaagacgttc ctctggcggt      2160
     ccgtcaggga atgtggttcc aacacgatgg cgcaccgccg cactttgctt ttgcggtacg      2220
     taagcattta gatgtgttgt acccgcaaag gtggattggc cgaggcggtc cattcctctg      2280
     gccagctcgt tcaccagatt tgacaccgtt agacttttat ttgtggggcc atgtgaagca      2340
     aatcgtctac gcgaccccag tagacacaac tgaagagctt cttgcgagga taattttagc      2400
     cttcgatgaa atcagggaaa cctttgattt cggaaagctt gcggagtcaa tgacgcagcg      2460
     ttgcaatgcg tgccgtcagg ctggaggagg acactttgag cagctactgt gaatttagtg      2520
     ttacgtttcg ctcctgaaaa taacgttctt acgttaaaca gctgccaaaa tatcagttta      2580
     ttgttttatg ttatacatta ctttccctgc atttgttaca tgtatgacca ttgactgtgt      2640
     atgaggttta ttgtttttcc atatttatgt ccaaacaggt acatattgtt agacctttgt      2700
     cggatgcatt tatgagcaat tattgaatgt tatggatact gtagctttcg gaataaatgt      2760
     gcatacttgg ggccaacgcc aatgtgttta tgcaaaaaaa gatgtacagt tccgttactt      2820
     acatgaaatc catacataaa tgattagaca aaaaatacag atgtgtttcc ccatttggat      2880
     aaaaacaaaa cgataaccct ggtggggatc gaactcagga ccttctgttt cacatgtcca      2940
     gctctctacc cccagaccac agtgtctcac gttacaacgg cctttcatat acaagtttat      3000
     acccatatga ctacaacatg gaggatacgt ttggcaacgc tgcctcttgt gggctgttcg      3060
     aatctgcgcg ccaaacgacg tgattggcta acttctaagc taaataactc ggaaacggcg      3120
     cgacgtatca aatttttttc ttaacattta tgtctcagta caacctgccc tacaacgtcc      3180
     tgacaagcat ttcagacatt ttctgaccac cctg                                  3214
//
ID   Mariner-53_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-53_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 895-895 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-53_HSal_1p"
FT                 /translation="MSEFVPKKQHLREVLLHYYLLKKSAAETCRLLVDVYG
FT                 DHAPSEPTCRYWFQRFKSGDFDVNDKERDGAPKKFQNEELEKLLDIDPCQT
FT                 LEELSAALDVDRSTVGKRLHALGMVQKAGNWVPHELKERDIERRLVTCEML
FT                 LQRQERKSFLHRIITGDEKWIHYDNPKRKLAWVKPGEPGPSTPKRNIHGSK
FT                 VMLCIWWDMRGVVYYELLKPSETINSQRYRLQLMRLKQAIQEKRPEWRDRH
FT                 EKLILQHDNARPHVGQPVRTYLEGVKWEVLPHPPYSPDIAPSDYHLFRSMQ
FT                 SALTGERFTSYDSIQKWVDDWIASKEIEFFTRGIRLLPERWAKVVASDGKY
FT                 FE"
XX
SQ   Sequence 1288 BP; 388 A; 268 C; 296 G; 336 T; 0 other;
     ttgggtatgg gaataagttt taatcgtttc cccatagatg gcattaatag tatcgcttgc        60
     atcttttcta acctttcgat acatggattt aaaaggtgta tatgtaagct gttaaacgca       120
     gtataagact tttgtttgga gtgcaaacag caagtattca tatcgcatcg aaaatgtcgg       180
     aatttgttcc aaaaaagcag catttgcggg aagttcttct ccactactat cttttgaaga       240
     aaagtgctgc ggaaacgtgc cgtttgcttg tggatgttta cggcgaccat gctccatcgg       300
     agccaacttg cagatattgg ttccaacgct tcaaaagtgg tgatttcgat gtcaacgaca       360
     aagaacgcga tggtgcccca aaaaagttcc aaaatgagga acttgagaaa ttgcttgata       420
     ttgatccatg tcagacactt gaagaattgt ctgcagcatt ggatgttgat cgatccaccg       480
     ttggaaaacg cctacatgcg ctgggaatgg ttcagaaggc aggaaattgg gtaccacacg       540
     agttgaagga aagggacatt gaaaggcgct tggtcacgtg cgaaatgttg cttcaacgac       600
     aagaaagaaa gagttttttg catcggatca tcactggcga tgaaaaatgg attcactacg       660
     acaatcctaa acgcaaacta gcatgggtga agccaggtga accaggtcca tcaacgccaa       720
     agcgcaatat tcacgggtca aaggtcatgc tctgtatctg gtgggatatg cggggtgtag       780
     tctactatga gctgctgaaa ccgtccgaaa ctatcaattc ccaacgttac cgacttcaac       840
     taatgcgttt gaaacaagct attcaagaaa aacggccgga atggcgcgat agacacgaga       900
     agctgatttt gcagcacgac aacgctaggc cacatgttgg tcaacccgtc cggacatacc       960
     tagaaggggt gaaatgggag gtcctacccc acccgccgta ttcaccagac attgcccctt      1020
     cagactatca tttgttccgg tcgatgcagt cggcacttac tggagagcgc ttcacctcat      1080
     atgacagcat acaaaaatgg gtcgatgact ggatcgcctc gaaagaaata gaattcttca      1140
     ctcgaggaat ccgtttattg cccgaaagat gggcgaaggt tgtcgcttca gatggaaaat      1200
     attttgaata aaatcattta atattttcat attcaaacta tgttttttgt ctacataaaa      1260
     aacgattaaa acttattccc atacccaa                                         1288
//
ID   Mariner-53_LMi repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-53_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1316
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 48-48 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus. Both termini are not covered.
XX
SQ   Sequence 1316 BP; 339 A; 314 C; 312 G; 350 T; 1 other;
     gtttgtgtgc cttattgtac agtactgtca acctcgtatg tataatggtg ttttaccttc        60
     ttacagaaaa cggattcact tttgtgttta ctgttattgt gctgtttgta tatacaaatg       120
     gtgtagtaca tttacatttt ctctcttcca ccacttgtta caatggaagc ctactactcg       180
     acaagtgaaa tggcggatat gatattctgc tatggtttag caaatagacg tagcctgcga       240
     gcccgtgccc tctatgctga aaaatatcca cagcgcaggt gccctctgat aagctgttca       300
     gcagactttt ccagcatctt aaggacacag gtaccatggc acctcaaaag actgacagcg       360
     gaaggcccgt cccacgcctg aaatggagga gcatgtgcta cgttcagtgg aagaaaaccc       420
     tggaaccagt gtgcgacgat agcagcagca gaaggcgtgt ctcactctct tatctggggg       480
     tacttatgaa caattgctgt acccatatca tctacagtgt gttcaggccc taaggccaca       540
     agatcatcat ggcagacggc ggttctgtca atggctgttg cagaagtgtg ccgcagatcc       600
     actgtttaca tccaagattt tatttactga tgaggcaagt tcacaagaga tggtgttgtg       660
     aatttccata accakcatgt atgggcagat gtaaatcccc aagcaattca ggaaagaggg       720
     catcagcacc gattctcaat caacgtatgg gcaggcgtac ttggcgatag attaataggg       780
     ccatacgtgc taccacaaag gtaaaggggc gcattatctg gactttctca ttaatgtatt       840
     gcctaccttg ctggaggatg tgccatgtca gcaacgatta cagatgtggt tcatgcatga       900
     tggcgcacca gcacactttc gtcacaatgt gcgcgaacat ctgacgcaga catttcagga       960
     ccgctggatt ggtcggggag gccccacacc ttggcctgct cgttccccag acctcaatcc      1020
     cctagacttt tggttatggg gacacttgaa ggaagtggtc tacgcaactc caatcaacga      1080
     tgtgcagaca ctacagggtc gcgtcttcaa tgcgtgccag caagtactac aacaacaacc      1140
     gggtatactt caaagggtgc gtcattcctt acgccgaagg gcagagggat gcattgccat      1200
     gaatggacgc cacgtggaac acctcctata aacacgtgtt tatctcagaa ggtatgcgtt      1260
     tccggaccca tgtttattgg actacttttc ttgtttcgat gagtactcca cctctc          1316
//
ID   Mariner-54_HSal repbase;    DNA;    INV; 1281 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-54_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1281
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 896-896 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(377..622,654..1202)
FT                 /product="Mariner-54_HSal_1p"
FT                 /translation="MSSDDLEALLQEDSTQSSVELAKRLHVNQSTVIRRLH
FT                 EMGKILKEGKWVPSMNYPRTLLPAESPFAFRCSIDTNTSLFCIELHNPNRK
FT                 RSWVNPGEPSTSQPKRNIHGHKVLLCIWWDMQGVLYYELLKPSQTITVELY
FT                 SRQLRQLNEQLIEKRPYFATKQNKVILLHDNARPHVALTTRETLMELQWEV
FT                 LPHPAYSPDIAPSDFHLFRSMQHSLSGTRFRNVEEVQQFIDNFIHSKSKDF
FT                 FYRGIHLLPERWQKVVDNAGKYFD"
XX
SQ   Sequence 1281 BP; 400 A; 242 C; 275 G; 364 T; 0 other;
     ttaggggtat gcaaaagttt ccatcgttca cgtatagatg gcattgtgaa ttatttacat        60
     gaaagttgcg acgcattttt gttagattat gtcagtattg gtcaacctgc atagaaactg       120
     atgcataata agtcatattt attgacataa acatttttaa ttcgtatgaa gatggaagtc       180
     gataagacgc atattcgtca ttgtatgctt ttttttattt catcagcgca aaacagctgc       240
     cgaagcaacc agaatcattt gcgaaactta tggtgaggga acgatagctg aaagttcatg       300
     tcgtgagtgg tttcggcgct ttaaaagtgg cgattttgac ttgaaagaca aggagcgtgc       360
     cgggcgaccg caagagatga gttcggatga cttggaagcg ttattgcaag aagattcgac       420
     tcaatcgagt gtagaacttg cgaaaaggtt acatgttaat cagagcactg taattcgacg       480
     cttgcatgag atggggaaaa ttctgaagga aggaaaatgg gttccctcca tgaattatcc       540
     gagaacgcta ttgccagccg agtcaccatt tgcctttcgc tgctcaatag acacaaacac       600
     aagtcttttt tgtatcgaat tgtgaccgga gacgaaaaat ggatttatta tgacataatc       660
     ccaatcgcaa aagatcgtgg gtaaatcccg gagaaccctc tacgtcacag ccaaaacgaa       720
     atatccatgg tcataaggtc ctcctgtgta tctggtggga catgcaagga gtgctgtatt       780
     atgagctgtt aaaaccatct cagactatca ccgtggaatt atacagtcga caattgaggc       840
     agttgaatga gcaattgatc gagaaacggc catattttgc gacaaagcaa aacaaagtga       900
     ttcttctgca cgacaatgcc aggccccatg ttgcattgac gacccgggaa actttaatgg       960
     aattgcaatg ggaagtccta ccacacccgg catattctcc agatattgcc ccatcggatt      1020
     ttcacttatt tcgttctatg cagcacagtc tttctggtac acgatttcgc aatgttgagg      1080
     aagtgcaaca attcatcgat aacttcattc attctaagag caaagacttc ttttatcgtg      1140
     gtatccatct tttgcctgaa agatggcaaa aagtagtaga taatgccgga aaatattttg      1200
     attaaagata ctatgtcatt tataataata ttaataaaaa acattgcctt aaaaacgatg      1260
     gaaacttttg cataccccta a                                                1281
//
ID   Mariner-54_LMi repbase;    DNA;    INV; 3055 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   23-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-54_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3055
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 49-49 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1238..1912,1916..2077)
FT                 /product="Mariner-54_LMi_1p"
FT                 /translation="MSEMADYMPFEIVRMIKIVGECRDNYAAAQRLYAERY
FT                 PTKETIRSLVRRAERGTLKRQRRKTGPREAIALGVRAIVAEDPHLSTRQIQ
FT                 RMHGVPRSTVSRVLRYFKFHPYRLHITQAIEPGDPERRLAFCRWADTQIRR
FT                 DPFFFARTLFTDEANFDNMGGVNLHNAHYWAEANPRWQRDHRTQRRWSINV
FT                 WAGIVGDYVIGPVFYGETLNGVPIFIFLRIWCLLYKISLWTYEHVCGINMT
FT                 APLHIGPYLSEGTLMQLTRIDGLVSAVQFVNSRQDRQT"
XX
SQ   Sequence 3055 BP; 882 A; 663 C; 679 G; 831 T; 0 other;
     cagggtgtcc cattttaatc tactccggcc aatatctctg gagtggcaca gttctgcaaa        60
     aaatgtctct agtgaaagtt gtaaggtttg aagggggtca tggaatggtt acctcgaaat       120
     gaccttgaac cctgttttca aggtcaaacc aaggtcaagt tcattttttc aaatggtaac       180
     ccctattttt attccatatt cgtattctac atgaaaaaat acgcattttt gtagggaaca       240
     tttttttcga aaaaccaatc gtttgtcgcc aaatggcact tcattgtaac tttcccaggt       300
     caccagtatc tcgagaacga agcaagatcg ggaaacattt tcaatgaaaa acttgtgtgg       360
     tttctgaact ctgtccactg gtgaaatttt cgtgaacttg aaatgacctt gaaattcttc       420
     agtacggatt aacctgaaag taaataccat cggcattagc gtaacccaat gtgcaccact       480
     tggagggtgc cgaatcagag accagcattg tgcttatgcc atcacaatca gagaagagaa       540
     gggtggagct tcgaggctaa ctaataaacg tcattgtcgg agaatttgaa atcatgactg       600
     ggggttcaga gaaattttac ctttggagac tttgaaaatt tctcggctgt gctcatttgg       660
     aatgattctt gactggcgtg actgtgataa atttttctct tttggactta gaaacagtgt       720
     gtgttaaggg atttagaaaa attccgcctc gtcgaactct gatcagtttc gcctcgtggg       780
     actccaaatc cgtacaagca acagttttct caacaagaat gtttagagca cataagataa       840
     aatgcagctg agtcactttg tctcgcaatc gactttctcg agcacgtctg tcgtttctgc       900
     cttctctcca tatttgaaaa ggatggatta ccatggggta tttcattgtt ttattattta       960
     cgtcaatatc gagatatgta aaggtgccct cctgaaagac acacatccgt tagacaccta      1020
     agtaattttc taaaagagcg cacttgaata ctgtatggtt tggcttcacg ttgtggcgga      1080
     aactacggca agcatgtgta aacaaacggg tcgcatacac tgtaataagt cagttgtcct      1140
     gcaacacgct tgccggatgg ttcgttgaag ggaaaaccta agaaaaccaa gaatagtaaa      1200
     agtgatcagt acaatttatt tttcgactct aatacgtatg tccgaaatgg ctgattacat      1260
     gccattcgaa atagtgagaa tgataaaaat tgttggcgag tgtcgcgata attatgcagc      1320
     cgcgcaaaga ttgtatgccg aaaggtatcc cacgaaggaa acaattaggt ctctggtaag      1380
     acgagctgaa agaggtacct tgaaaagaca gagacgaaag acgggcccga gagaggcgat      1440
     tgcgctggga gttcgtgcta tcgtcgctga agatccacac ctttcaactc gtcagattca      1500
     gcggatgcat ggcgtgcctc gatcaacggt atctcgtgtt ttaagatact ttaaattcca      1560
     cccatatcgc ttacatatca cccaagcaat tgagcctggg gatcctgaga gacgcctggc      1620
     attttgtcga tgggccgata cgcaaatacg tcgtgatccc tttttcttcg cacgcactct      1680
     ctttacagac gaggcaaact tcgacaacat gggaggagtc aatctccata acgcacacta      1740
     ctgggcggaa gcaaatcctc gctggcaacg agatcaccga acacagagac ggtggtcaat      1800
     caatgtctgg gcgggcatag ttggagatta cgtgataggt cctgtatttt atggcgaaac      1860
     gttgaacggc gtgcctatct tcatattctt gagaatctgg tgcctccttt actagaaaat      1920
     atccctctgg acatacgagc acgtatgtgg tatcaacatg acggcgcccc tgcacatcgg      1980
     accttacctg tcagaaggta ccttaatgca acttacccga atcgatggat tggtatcggc      2040
     agtgcaattc gtgaattccc gccaagatcg ccagacttaa caccattgga ctcttcttat      2100
     ggggagctgt gaagcagaag gtgtactcca ctcccccgac gacgccagaa gatatgagag      2160
     aaaggattgt ggcggcgttc caggcaatca cccatcagac cttgaatgat gtcgagacca      2220
     gtttccgcca gagagtgcaa atgtgcatta ggcaaaatgg gcagttgatc gagcacctga      2280
     gatcctaaat ttccagtgag aaccatgtta atcagccctt tccagggcta acgatatgcg      2340
     aagtccgctg ggcaacctcc acgtggtttc taagtccaaa agagaaagat ttatcagtca      2400
     cgccagtcaa gaatcattcc aagtgagcac agccgagaaa ttttcaaagt ctccaaaggt      2460
     aaaatttctc tgaacccagt catgatttca aattccccga caatgacgct tattagctag      2520
     cctcgaagct ccacccttct ctgaatgtgt tggcataagc acgatgctgg tctctgattc      2580
     ggcaccctcc aagtggtgca cattgggtta cgctaatgcc gacggtattt actttcaggt      2640
     taatccgtac tgaagaattt caaggtcatt tcaggttcac gaaaatttca ccagtggaca      2700
     gagttcagaa accacacaag tttttcattg aaaatgtttc ccgatcttgc ttcgttctcg      2760
     agatactggt gacctgggaa agttacaatg aagtgccatt tggcgacaaa caattggttt      2820
     ttcaaaaatg ttccctaaaa aatgtatttt ttcatgtaga atacaatatg gaataaaaaa      2880
     taggggttac catttgaaaa aatgaacttg accttgaaaa cagggttcaa ggtcatttcg      2940
     aggtaaccat tccatgaccc ccttcaaacc ttacaacttt cactagagac atttttttgc      3000
     agaactgtgc cactccagag atatcggccg gagtagatta aaatgggaca ccctg           3055
//
ID   Mariner-55_HSal repbase;    DNA;    INV; 912 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-55_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-912
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 897-897 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(195..530,521..856)
FT                 /product="Mariner-55_HSal_1p"
FT                 /translation="MSKSVDQRICIKFCVANQINFTQTLEMLRKAYPEDCL
FT                 SRTRVFEWHKAFKEGREAVDDESRSGRPSTSTDDEHVAQVKALVLKNRRMS
FT                 VRELAAEVGISKTQCHVILTEIWANLGMKRVTICASSTSLIVREFLAKNST
FT                 NIVPQAPYSPDMAPCDFFLFPKLKLPLRGHRFESIEAIKENSLRELKAIPQ
FT                 SAFAGAFEDWKKRWHMCIASNGEYFEGDKINIDE"
XX
SQ   Sequence 912 BP; 256 A; 183 C; 210 G; 263 T; 0 other;
     ccttctgtcc ggaaactaac ggaactttct catttaaact gcgcgcgctt gtggaatctc        60
     atgttgtaat tttcttttaa gttggtacaa ctgtcagtga tatttgtgtc aaatttcatg       120
     acgctacact cattagtaaa caatttacag tggtttttgt tagacggtga ttgttgttca       180
     cggcgatttt tacgatgtcg aaatcagttg atcaaagaat ttgcattaaa ttttgtgttg       240
     cgaaccaaat aaacttcacg caaacgttgg aaatgttaag aaaggcatac cctgaggatt       300
     gtctatcgcg aacaagagtt tttgagtggc ataaggcgtt caaagagggc cgtgaagccg       360
     tcgatgatga atcacgatct ggacgcccat cgacatcaac tgacgacgaa cacgtcgccc       420
     aagtcaaggc attggtgctc aaaaatcgtc gtatgtccgt cagagagtta gcagctgagg       480
     tgggaatctc aaaaacacaa tgccatgtca ttttgactga aatttgggca tgaaacgcgt       540
     cacgatatgc gccagctcca catcgttgat tgttcgtgag tttttggcca aaaactcaac       600
     caatatcgtt ccgcaagctc cgtattcgcc tgatatggct ccgtgcgact ttttcctatt       660
     cccaaaactc aagttgccgc tccgaggaca tcgttttgag tcgattgaag ccataaaaga       720
     aaattcgctg cgtgaactga aggctatacc acaaagcgcg ttcgcgggag cgttcgagga       780
     ctggaagaag cgttggcata tgtgtattgc ttccaatggg gagtactttg aaggcgacaa       840
     aataaatatt gatgaataaa taatttctta tgtgttttat ttcaaaagtt ccgttagttt       900
     ccggacagaa gg                                                           912
//
ID   Mariner-55_LMi repbase;    DNA;    INV; 2948 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 20.01, Created)
DT   24-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-55_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2948
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 50-50 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..1586
FT                 /product="Mariner-55_LMi_1p"
FT                 /translation="MSDVKQSRQVLHKQARGIVYRVYQYFKSLSSAEAAPA
FT                 QGAGRAVARCQEQTAEACGIGLRTVQRISSEANASLLACGSAVFKSPGKRH
FT                 NRKKEVGELDDFAKNVLRRIVFSMYARGEYPTAEKLVSHMKEAENFNGSKW
FT                 TMLRILKDMGFRYQKTNDGRKLLLERSDIVAARTVFLRTMQQIREAGTSRI
FT                 YYLDETFVNQNHARAMCWKMSDGYGGLKVPVGKGGRIIVLHVGSAETGFIP
FT                 QSKLIFKASKAKNSEDYHSEMTYSIFKKWFKEQLLPYIPPCSVIVMDNASI
FT                 HSVQVNKVPSTNSRKGDIIAWLTSNGIPHSSSHTRAELLVLVNANKPAYKV
FT                 YEIDEIAKQHGHRVVRLPPYHCHYNPIELVWAQVKAYIAEKNKTFKIADVE
FT                 RLTHEAIESISESAWAACVRHAEKLQEEDHEREIGRDTIMEPFVINLAECD
FT                 SSTSDSEEDDGIDFLP"
XX
SQ   Sequence 2948 BP; 885 A; 551 C; 653 G; 858 T; 1 other;
     tagagtggag agcagctacg aaggcgggtc aaggtcagat gcgcagtagc aagcggaagt        60
     gcaccacgtg accttcagcc aaccacgcgc cagtggcatt cctgccttcg tactgtgcgg       120
     gtcgtgctgt gttcgtgaag ttcggtgttt attagtgtct gtgttctgtg ctaagtgatt       180
     attttgccat aatagtstac attatgagtg atgttaagca atcacgccaa gttctgcaca       240
     aacaggcaag aggaatagtg taccgtgtgt atcagtactt caaaagtctg tcttctgctg       300
     aggccgcgcc ggcacaaggt gcgggtcgcg ccgttgccag atgccaggag cagacggccg       360
     aggcttgcgg cattggcttg aggactgttc agaggatctc cagcgaagct aacgcgtctc       420
     tgctggcatg tggctcagct gtttttaaat cgccaggcaa acgtcacaat cgcaaaaaag       480
     aagtgggtga gctagacgat ttcgcgaaaa acgttttgcg ccgcatagta ttcagcatgt       540
     acgctagagg cgaatatccg actgctgaaa aattggtttc acatatgaaa gaagcagaaa       600
     attttaacgg aagtaaatgg accatgttga ggatactgaa ggacatgggg ttcaggtatc       660
     agaaaacaaa tgacgggagg aaattactgt tggaacgtag cgacattgta gctgcaagga       720
     ctgtgttttt aagaacaatg cagcagatta gagaagccgg cacctctcga atttattatt       780
     tagatgagac tttcgtcaac cagaatcatg caagggctat gtgctggaaa atgagtgatg       840
     gatacggtgg actgaaagtt ccagtgggta agggcggcag aattatagtg cttcatgtcg       900
     gatcagcaga aactggcttc attccccaga gtaagctgat ttttaaggct tcaaaggcta       960
     agaattctga agattaccat tctgagatga catacagtat cttcaaaaag tggtttaaag      1020
     aacaactgtt gccatacata cctccctgtt ctgttattgt catggacaat gcgagcatcc      1080
     attccgtgca agtcaacaaa gttccctcca cgaattccag aaagggggac attattgcat      1140
     ggttaacatc aaacggaata cctcacagct cctcacatac cagagcagaa ttgctggttc      1200
     ttgtcaatgc aaacaagcct gcatacaaag tttatgagat agatgaaatt gcaaaacagc      1260
     atggacatcg tgttgttagg ttaccgccat atcattgtca ctataaccca attgaactgg      1320
     tatgggctca ggtcaaagca tatattgcag aaaaaaacaa aacatttaaa attgcagatg      1380
     ttgagagact tacgcacgag gcaatagaga gcatctcaga atctgcatgg gcagcttgcg      1440
     taagacatgc agagaaattg caggaagaag atcacgagag agaaattggc agggacacta      1500
     ttatggaacc attcgtaata aatcttgcag agtgcgattc ctcgacgtcc gacagcgaag      1560
     aagacgatgg cattgatttt ttaccgtgaa gtatgtaagt agcctatcac ttactagtac      1620
     ttatgacttt gttcctatga ctgactgcag ctactttaaa attattaata attattcata      1680
     aaacaatttg ttcgtataag ttgcacatgt tgtagggcgc gatcattatt tggattatta      1740
     ataatatttt cttatatttc aaagaacaga acaactgtga ctgttaaaat cccttattaa      1800
     ataatacgat cggtttcgca atttacaatt gctttctcag gtgttttatc agtttataaa      1860
     tgaataaaga actattacag ttaaaacgct ctcagtattt ttaatatgaa ggcggaaagg      1920
     tctgtgtctg tttacgtcaa accattaaaa tattctgtta tataatgatt taacgtaagt      1980
     aaacaagacc ttcccgccta tatattaaaa atattgaaat tctgacagtt ctttattcat      2040
     ttgtaaacag ataaagcacc tcaggatgca attgtaaatt tcggaaccgg tcgtgttctt      2100
     taataaagaa ttttaatagt cgcagcggtt ctgctgtcct gttctttgaa atatgggaaa      2160
     ctggactgtg tgtgtggtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt taagcttaat      2220
     atgttcttgt taggatcgcg ctgtgtttta atttccacat aactagtttc aacagacaag      2280
     ctaccatctt cagatcttgt ggaataccta ctttataaaa tatgctgctg tattaatatt      2340
     cagatctgct ctcattatgg gagcgagatc taaatttata aaagatctaa atttataaat      2400
     taggtattcc acaagatctg aagatgttaa cttgtctgtt gaaactagtt acgtggaaat      2460
     taaaatacag cgcgatccta gcaagagaat attgttattt ctttctagta ggcctacata      2520
     catagatcgt taaatggttt accaaatact gattttcttt cactgtgcaa cctattaaac      2580
     cattacgatt tgtcattgat acccttaagg tcatacatac cgatgactga aatacttcaa      2640
     gtatcggtac tttcgatcgc tgtggatgcc taatgtagtt atacaaagaa atcttttaat      2700
     tagaagaacg ttattcttgt tcaaaatact aaaccattaa aattttaaag tgtttaaaga      2760
     aaggaactaa atcgtggaca ttgacagcgt gcgcgctcac tgtggcacaa tgtttacgct      2820
     tgcgtgcgct gtcagctgtc agagtgcgcg aactgacgga aggaaactgg catcgtcgca      2880
     aagtatctcc cctctctctc tgcgcagaac gctcgcctcg cccgccttcg tagctgctct      2940
     gaactcta                                                               2948
//
ID   Mariner-56_HSal repbase;    DNA;    INV; 1275 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-56_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1275
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 898-898 (2014).
XX
DR   [2] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 1275 BP; 404 A; 270 C; 272 G; 329 T; 0 other;
     ttaggtgtgc aaattaattc ggtgccttta catttaacgt cttgtaactc tggttcaaat        60
     taaaattttt tcccgtccta tggtgatttg aaagtgccaa ccttaagctt taagaagcac       120
     tataatagtt gacggccctg ccgacataac ctcacgaaac agcagtgaac acgatggcgg       180
     tcgaaaagca gcatttgagg cactgcattc ttttcgcatt tgaattgaaa aaaatgctgc       240
     tgaagctacg gaaatgattt gttccgctct gggtaaagac gctgtgacgt ataaaacgtg       300
     caaaaatggt accagaagtt tcggaatgga gattttgatc tttcggatcg agaacgtcca       360
     ggccaaccaa aaaagtttga agacgaagaa ctcgagcaac tgttaaatga aaactccgct       420
     caaactcaac aggagcttgc actacaactg ggagttaccc accaatgcat atcccatcgt       480
     ctacttcaac tcggaaaaat tcaaaaggag ggtagatgga ttccgcataa cctcagtccg       540
     gaaaacaaac agcgaagatt cgacacggct atgtctttgc tgacccggtt taaaagaaag       600
     gattttttat acaaaatcat tacgggtgat gaaaaatgga tattgtatga caaccctaaa       660
     cgcaaaaatc gtgggtagat cccggccaac cgtcgacatc aacgccgaag cccaatattc       720
     acgcaagaaa aattttgctg tgcatctggt gggatatgaa gggtgtggtc tactatgagt       780
     tgctgaatct tggccagact attaatgcag actattacca acagcaactt atccgtttaa       840
     gcgatgcttt ggagcaaaag aggctttata ctggcgacgg aactaggcaa gtgattttgc       900
     agcacgacaa cgctcgacca catgccgcaa aagggacgaa ggacctcatc tatacattgg       960
     gctgggaaat tctccctcat gcggcttatt cgccagatct agcctcgtcg gattaccacc      1020
     tatttcggtc gcttcaacat catctggcgg atacgcattt taaaacagtt gacgaggtcc      1080
     gaaaaagcat tgatgacttt attgaatcaa aaccgccaag tttcttccgc gagggcattc      1140
     atcagctgcc cgatagatgg agtaaagtca tagaaaataa tggaaattat ttcgaacatt      1200
     aaacttgtac ttgacttttt gtaaataaac tttgaatttc atgaaaaaag gcaccgaatt      1260
     aatttgcaca cctaa                                                       1275
//
ID   Mariner-56_LMi repbase;    DNA;    INV; 1918 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-56_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1918
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 51-51 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           494..1552
FT                 /product="Mariner-56_LMi_1p"
FT                 /translation="MTMAYTNNEYVDMLLMLGECRHDATEAATAYAVRYPR
FT                 RRAPAAITFLRAEQRLRETGSLVMRRSNRRRPARSEETEVFVLAALHHDPH
FT                 VSLRAVAAVAGVSLTSVWRIVHGHRFHPYRLSLTQELHGNDFRARVTFCEW
FT                 AMRNFTLESLQSVMFSDESTFTNYGAVNRHNMHYWAADNPRWVRPVDRQRR
FT                 WSINVWCGILGDEIIGPHYFPGTLTGELYRAFIADSLGGLLEHVCLHTRVH
FT                 MWMQHDGHPAHSARAVVEELNNRFAGRWLGRHGPHSWPARSPDLTPVDFFL
FT                 WGYLKDRVYVTEPTSPDDLKRRIEDACRSVTPAMLHLVRRSFRRRIALCIE
FT                 EHGHTFEHLM"
XX
SQ   Sequence 1918 BP; 509 A; 456 C; 452 G; 501 T; 0 other;
     cagggtgttt cactaagtgt gtttgcctct gtaacttata aaataatagg tgacgggaaa        60
     ttttaatgcg gtaggtcaac acaagaaatg ttacactttc tgcggagcta tgaacatagt       120
     ttattgtatc attttccaaa gagttacagc acaaagatat aattttttaa atggaacaat       180
     agttttttct atcgtgcatt ggattcgttg aaaccagctg cgtccaaatc aatttaaact       240
     acattcctat cactgttagt ttgggagcta caacccttca aagtttcagg ggcagatacc       300
     acaaacgctg cgcataatgc aatgcgcctt ctaaatgtgg tgcggccgag ttgtaacgtc       360
     gccggtgtca cggagcgaga agcttcctcg atgcgctgtt agactgccga ctgtcgccgc       420
     acacggccgt atacccgaca gttggagcca cacaaacaac cggggctcaa tataccacag       480
     ttactgacat cggatgacga tggcatacac gaacaacgag tacgttgaca tgttgctgat       540
     gctcggcgag tgccgacacg atgccactga agcagccacg gcgtatgccg tgagatatcc       600
     taggcgaaga gccccggcag ccattacgtt cttacgtgcc gaacaacgac ttcgggaaac       660
     aggcagcttg gtaatgcgcc gcagtaacag acgaagacct gcaagaagtg aggagacgga       720
     ggtgtttgtt ttagctgcac tacaccacga tcctcatgtc agcttacgag ccgttgctgc       780
     agtcgctggt gtcagtctca catctgtgtg gcgtatagta cacggccaca ggtttcaccc       840
     gtaccgcctg tcactgaccc aggagctgca tgggaacgat ttccgtgcaa gagtgacatt       900
     ctgtgagtgg gccatgcgta atttcacgct ggagtcttta caaagtgtta tgttctctga       960
     tgagtccacg ttcacaaatt atggtgcagt gaatcgccat aacatgcact actgggccgc      1020
     agacaatcct cggtgggtac gacctgtcga ccgtcaacgt aggtggtcta ttaacgtgtg      1080
     gtgtggaatc cttggggatg aaatcatcgg tccacactac ttcccaggta cactgacagg      1140
     tgagttatat cgcgctttta tagccgacag tttgggtggt ctccttgaac atgtgtgtct      1200
     acacacgaga gtccatatgt ggatgcagca cgatggtcac ccagcccatt ctgcgcgtgc      1260
     tgttgtggaa gaactaaaca acaggtttgc aggaagatgg ttggggcgcc atggtcctca      1320
     ttcatggccc gcaaggtcgc ccgatttaac accagtagat ttctttttgt ggggatatct      1380
     aaaggatcgt gtttatgtca ctgagcccac atccccagat gatctaaaac ggcgcatcga      1440
     ggacgcatgt cgctccgtca caccggcgat gttacatctc gtccgcagat cctttcgacg      1500
     gcgcattgca ttatgcattg aggaacatgg acacacattt gaacatctca tgtaaatcaa      1560
     cttcccaccg ccataacatc catcacccac cacacagcca tgtattatgt acagcgtgtg      1620
     gtatctgccc ctgaaacttt gaagggttgt agctcccaaa ctaacagtga taggaatgta      1680
     gtttaaattg atttggacgc agctggttca acgattccaa tgcacgatag aaaaaactat      1740
     tgttccattt aaaaaattat atctttgtgc tgtaactctt tggaaaatga tacaataaac      1800
     tatgttcata gctccgcaga aagtgtaaca tttcttgtgt tgacctaccg cattaaaatt      1860
     tcccgtcacc tattatttta taagttacag aggcaaacac acttagtgaa acaccctg        1918
//
ID   Mariner-57B_HSal repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   09-DEC-2012 (Rel. 19.04, Created)
DT   11-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-57B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1316
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 899-899 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           200..1234
FT                 /product="Mariner-57B_HSal_1p"
FT                 /translation="MEQRANIKFCFKLGKSGAETYETLKNVYGDECMSRAQ
FT                 VFRWFGRFRDGREDLADDDRAPPPKTTRNEENIEKVKEILRSDRCVSARLI
FT                 EEETGIPKSTVYRILTEDLGKRKVCARFVPHTLTDDQKDWRVQHCKDMLKM
FT                 SRRNPASMSAIVTGDETWCFQYEPKTKRQSAAWKSPEEPKEKKLRFQKSKI
FT                 KTMLTVFFDSKGIVHSEFVPEGQTVNAEYYLGVLQRLWARIRRVRPEYREP
FT                 GSWFLLHDNAPSHKAIMVREFLTKKGIIVIDHPPYSPDLAPCDFWLFPKLK
FT                 LAMKGNRFDTIPVIQKTSTAILKAIPADEYKKCFEKFVERFQRCIDSEGDY
FT                 FE"
XX
SQ   Sequence 1316 BP; 416 A; 268 C; 303 G; 329 T; 0 other;
     tacacagtct gtcccagata cgatgagact ggttccatca aagttcttag cgcagcgata        60
     tctatgagtg aatgatggta ggtgaatgtt ctacccttca tctacttaac ctcaaaattt       120
     gagcgaattc ggttgatatt tcactgtggt ttgacatttt atgtaaagtc actttgtgta       180
     cgtcggtcga aaaaccaaca tggaacaaag agcgaatatt aaattctgtt ttaaattggg       240
     taaaagtggt gcagaaacgt acgaaacgct aaaaaatgtg tacggggatg aatgcatgtc       300
     ccgtgcacag gttttccgtt ggtttggccg attccgtgac ggtcgtgagg accttgcaga       360
     cgatgaccga gcaccgccgc caaaaaccac tcgcaatgaa gaaaacatcg agaaagtcaa       420
     agaaattctt cgaagcgacc gctgtgtgtc tgcgagactc atcgaagagg aaactgggat       480
     accgaaaagc acagtctatc gaattttgac cgaagatttg ggcaaacgga aggtctgtgc       540
     gcgcttcgtg ccacacactc tgacagacga ccaaaaagat tggagagttc agcattgcaa       600
     agacatgtta aaaatgtccc gaaggaatcc ggcaagcatg tcagccattg taactggtga       660
     tgaaacgtgg tgttttcaat acgagccaaa aacaaaacgt cagagtgcgg catggaagtc       720
     accagaagag ccaaaagaga aaaaattacg ctttcagaag agcaaaatca agacaatgct       780
     gaccgttttc ttcgattcaa agggaattgt tcacagtgaa ttcgtcccag aaggtcagac       840
     ggtgaacgca gaatattatc tgggagttct acaacgattg tgggccagaa ttcgacgagt       900
     tcgaccggaa tatcgagagc caggcagttg gtttttgttg cacgataatg caccatcgca       960
     caaagccatc atggtacgtg aattcttgac caaaaaaggc atcattgtta tcgatcatcc      1020
     accgtattca cctgatttgg ctccgtgcga cttctggcta tttcccaaac tgaaattggc      1080
     gatgaaagga aatcgtttcg ataccatccc ggtcatccaa aagacttcga ccgccatact      1140
     aaaggccatt ccagccgatg agtataaaaa atgtttcgaa aaatttgttg aacgtttcca      1200
     gcgctgtatt gactcagaag gagactattt tgaataaaca agaataaaaa atcaaaataa      1260
     taaacgcttt gtattttttt tagaccagtc tcattggatc tgggacagac tgtgta          1316
//
ID   Mariner-57_HSal repbase;    DNA;    INV; 889 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-57_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-889
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 900-900 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 889 BP; 274 A; 184 C; 198 G; 233 T; 0 other;
     cacagtctgt cccagatacg atgagactgg ttccatcaaa gttcttagcg cagcgatatc        60
     tatgagtgaa tgatggtagg tgaatgttct acccttcatc tacttaacct caaaatttga       120
     gcgaattcgg ttgatatttc actgtggttt gacattttat gtaaagtcac tttgtgtacg       180
     tcggtcgaaa aaccaacatg gaacatgttt taaattgggt aaaagtggtg cagaaacgta       240
     cgaaacgcta aaaaatgtgt acggggatga atgcatgtcc cgtgcacagg ttttccgttg       300
     gtttggccga ttccgtgacg gtcgtgagga ccttgcagac gatgaccgag caccgccgcc       360
     aaaaaccact cgcaatgaag aaaacatcga gaaagtcaaa gaaattcttc gaagcgaccg       420
     ctgtgtgtct gcgagactca tcgaagagga aactgggata ccgaaaagca cagtctatcg       480
     aattttgacc gaagatttgg gcaaacggaa ggttgcacga taatgcacca tcgcacaaag       540
     ccatcatggt acgtgaattc ttgaccaaaa aaggcatcat tgttatcgat catccaccgt       600
     attcacctga tttggctccg tgcgacttct ggctatttcc caaactgaaa ttggcgatga       660
     aaggaaatcg tttcgatacc atcccggtca tccaaaagac ttcgaccgcc atactaaagg       720
     ccattccagc cgatgagtat aaaaaatgtt tcgaaaaatt tgttgaacgt ttccagcgct       780
     gtattgactc agaaggagac tattttgaat aaacaagaat aaaaaatcaa aataataaac       840
     gctttgtatt ttttttagac cagtctcatt ggatctggga cagactgtg                   889
//
ID   Mariner-57_LMi repbase;    DNA;    INV; 1322 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-57_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1322
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 52-52 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           193..1260
FT                 /product="Mariner-57_LMi_1p"
FT                 /translation="MEHRNLEQRCAIKFCVKLGESASVTFEKLKQAYGEQC
FT                 LSRAQVFRWHKSFLEGREHVEDEPRSGRPSTSKTDENIDRVRALVRSDRRL
FT                 TIRMISEQLNLNTFTVHQIVTDDLNMRKVCAKLVPKNLTTEQKDIRKNVCV
FT                 DLLERIANDQEFFNCVITGDESWIFEYDPETKRQSKEWHTPSSPRPKKCRM
FT                 SKSKIKTMLICFFFFDRKGIVHKEFVPPGQTVNQVFYKSVLEKLRKRVIRV
FT                 RPEIADKWMLHHDNAPCHTAICIREFLTSKRITVVPQPPYSPDLSPCDFFL
FT                 FPKLKHVLKGRHFGTLENIQKTVTDQLKAIPIEDFQRCYQEWERRLRRCVA
FT                 AQGNYFEGDNIVV"
XX
SQ   Sequence 1322 BP; 399 A; 270 C; 294 G; 359 T; 0 other;
     cgaggtgtgt tagaaaagta atgagattgg caacactgcg ggagatctgg caacgttgtg        60
     tctaccggcc gatgctaaat ctgattgttg atcccttcca cttcctcagt ccgagttaca       120
     actccgtaca gttaacacat tagttttcac aacgccatta gtaaagttgt gttttcattg       180
     tgcgtcacag aaatggagca tcggaattta gagcaacgtt gtgcaataaa gttttgtgtt       240
     aaacttggtg aatccgcgag tgtgactttt gaaaagttga aacaggccta tggggaacag       300
     tgcttatcga gagcacaagt tttccgctgg cacaaatcat ttttggaagg ccgagaacac       360
     gttgaagatg aacctcgctc agggagacct tcgacttcaa aaactgacga aaacattgat       420
     cgtgtgaggg ctcttgtgag atcagaccgt cgtttaacaa taaggatgat cagtgaacag       480
     ctaaatttaa acactttcac cgtgcatcaa attgtgacag atgatttgaa catgcgaaag       540
     gtttgtgcca aattggtgcc gaaaaatctc acaactgaac agaaggacat tcgaaaaaac       600
     gtgtgcgttg atcttcttga gaggattgct aatgaccaag aattcttcaa ttgtgtgatc       660
     actggtgatg aatcctggat atttgagtac gatcctgaaa caaagcggca aagtaaagaa       720
     tggcacactc cgtcatctcc tcggccgaag aaatgtcgaa tgagcaagtc aaagatcaag       780
     accatgctga tttgtttttt tttttttgac aggaagggta tcgtgcacaa agaattcgtt       840
     ccaccaggac aaactgtcaa ccaagtgttt tataaaagtg tccttgaaaa gttgaggaaa       900
     agagtgatcc gtgtgagacc agaaattgca gacaagtgga tgcttcacca tgacaatgct       960
     ccgtgtcaca cggccatttg catccgtgaa tttttgacct caaaacgcat tactgttgtt      1020
     cctcaacccc cctattcacc tgatttgagt ccttgtgact ttttcctctt cccgaaattg      1080
     aaacatgtcc taaaaggacg tcattttgga actctggaga acattcaaaa gacagtgacc      1140
     gaccagttaa aagccatacc aattgaagac ttccagcgct gctaccaaga gtgggaacga      1200
     cgactccgcc gatgtgtagc tgcccaaggg aactactttg aaggggataa cattgttgtt      1260
     tgaaaataat aaaaactttg gttagtatga aatcagtctc attacttttc tcacacacct      1320
     cg                                                                     1322
//
ID   Mariner-58B_HSal repbase;    DNA;    INV; 914 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.04, Created)
DT   06-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-58B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-914
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 901-901 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus. It is an internally deleted
CC   derivative of Mariner-58_HSal.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..859
FT                 /product="Mariner-58B_HSal_1p"
FT                 /note="HTH and DDE-transposase."
FT                 /translation="MSNIVEQRVCLKFCVFNEISCADALKMLQKAYGDNCI
FT                 SKTQAYEWYKLFKEGRTAVEDLPRSGRPSTSNTDENVKRVKKLVLENRRVS
FT                 EREIAAELNISNGSVHTILTEDNSWILHHDNAPSHTSLLVRDYLAKHSTNI
FT                 IPQAPYSPDMAPCDFFLFPKLKLPLRGKRFETTEAVKENSLKELKAIPKSA
FT                 YEKCFEDWIKRWHMCVAQNGNYFEGDKINLPE"
XX
SQ   Sequence 914 BP; 265 A; 183 C; 197 G; 269 T; 0 other;
     ccttctgctc aaaaagtacc cggaattgct catttaaatg acgcgcgttt atgatatttc        60
     aaaatccttt tgtggttaag ttggtaccac tgtacttaac ttccatacag aattagagcg       120
     cgatctgtca attagtttgt tcgtggcagc tgtttatgtc agtcgacttc aggtaccatc       180
     tgcgattttt acgatgtcga atattgtgga gcaaagagtt tgccttaaat tttgtgtttt       240
     caacgaaatt tcttgtgccg acgcgttgaa aatgctacaa aaagcatatg gggataactg       300
     tatttcaaaa acacaggcgt atgagtggta taaattgttc aaagagggtc gtacagccgt       360
     cgaagacttg cctcgttctg gtcgcccatc cacgtcaaat accgacgaaa acgttaaaag       420
     agtgaagaaa ttagtgcttg aaaatcgccg tgtgagtgaa agagagattg ctgccgagct       480
     taacatatca aatggctctg tccataccat tttgaccgaa gacaactcat ggattttgca       540
     tcacgataat gcaccatcgc acacatcgct tctcgtacgt gactatttgg ccaaacactc       600
     gactaacatc attccgcaag caccgtactc gccagatatg gcaccctgtg acttttttct       660
     cttcccaaaa ctcaaattac cgcttcgtgg taagcgtttt gagacgactg aggcagtaaa       720
     agagaattcg ctgaaggaac tcaaggccat accaaaatcg gcttatgaaa agtgttttga       780
     agattggatt aagcgttggc atatgtgtgt tgcacagaat gggaactatt ttgaaggcga       840
     caaaataaat ttacctgaat aattgaatat tttgtgtttt attgcccgat tccgggtact       900
     ttttgagcag aagg                                                         914
//
ID   Mariner-58_HSal repbase;    DNA;    INV; 1320 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   10-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-58_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1320
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 902-902 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..733
FT                 /product="Mariner-58_HSal_1p"
FT                 /note="HTH."
FT                 /translation="MSNIVEQRVCLKFCVFNEISCADALKMLQKAYGDNCI
FT                 SKTQAYGWYKLFKEGRTAVEDLPRPGRPSTSNTDENVKRVKKLVLENCRVS
FT                 EREIAAELNISSGSVHTILTKVLGMRRVAARLVPKQLNFLQKEYRKNVAEE
FT                 MIFQASADETFMQRIITGDETWVYEYDERNQSTIFGVALRK"
FT   CDS           681..1265
FT                 /product="Mariner-58_HSal_2p"
FT                 /note="DDE-transposase."
FT                 /translation="MNMMNETSQQSSEWRCENEAKPKKPRQSRSKIKAMLT
FT                 VFFDCRGVVHSEFLPEGETVNKHYYLGVMKRLREQIRRKRPDLWKDNSWIL
FT                 HHDNAPSHTSLLVRDYLAKHSTNIIPQAPYSPDMAPCDFFLFPKLKLPLRG
FT                 KRFETTEAVKENSLKELKAISKSAHEKCFEDWIKRWHMYVAQNGNYFEGDK
FT                 INLPE"
XX
SQ   Sequence 1320 BP; 392 A; 266 C; 301 G; 361 T; 0 other;
     ccttctgctc aaaaagtacc cggaattgct catttaaatg acgcgcgttt atgatatttc        60
     aaaatccttt tgtggttaag ttggtaccac tgtacttaac ttccatacag aatcagagcg       120
     cgatctgtca attagtttgt tcgtggcagc tgtttatgtc agtcgacttc aggtaccatc       180
     tgcgattttt acgatgtcga atattgtgga gcaaagagtt tgccttaaat tttgtgtttt       240
     caacgaaatt tcttgcgccg acgcgttgaa aatgctacaa aaagcatatg gggataactg       300
     tatttcaaaa acacaggcgt atgggtggta taaattgttc aaagagggtc gtacagccgt       360
     cgaagacttg cctcgtcctg gtcgcccatc cacgtcaaat accgacgaaa acgttaaaag       420
     agtgaagaaa ttagtgcttg aaaattgccg tgtgagcgaa agagagattg ctgccgagct       480
     taacatatca agtggctctg tccataccat tttgaccaaa gttttgggca tgagacgcgt       540
     tgcagcacgg ctggtgccga aacagctgaa ttttttgcaa aaagaatacc gcaaaaatgt       600
     ggccgaagaa atgatttttc aagcatctgc cgacgaaaca ttcatgcaac gcatcattac       660
     tggtgacgag acgtgggttt atgaatatga tgaacgaaac cagtcaacaa tcttcggagt       720
     ggcgctgcga aaatgaggca aaacccaaaa aaccacgtca aagtcggtca aaaattaagg       780
     caatgctgac cgttttcttt gattgtcgcg gcgtcgtgca ttcagaattc cttccggagg       840
     gcgaaacagt taataaacat tactacttgg gcgttatgaa gcgtttgaga gagcaaatcc       900
     gtaggaaaag gcccgatttg tggaaagaca actcatggat tttgcatcac gataatgcac       960
     catcgcacac atcgcttctc gtacgtgact atttggccaa acactcgact aacatcattc      1020
     cgcaagcacc gtactcgcca gatatggcac cctgtgactt ttttctcttc ccaaaactca      1080
     aattaccgct tcgtggtaag cgttttgaga cgactgaggc ggtaaaagag aattcgctga      1140
     aggaactcaa ggccatatca aaatcggctc atgaaaagtg ttttgaagat tggattaagc      1200
     gttggcatat gtatgttgca cagaatggga actattttga aggcgacaaa ataaatttac      1260
     ctgaataatt gaatattttg tgttttattg cccgattccg ggtacttttt gagcagaagg      1320
//
ID   Mariner-58_LMi repbase;    DNA;    INV; 956 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-58_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-956
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 53-53 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           215..739
FT                 /product="Mariner-58_LMi_1p"
FT                 /translation="MNFVSLKNCNETNASGSFQDLNKVITGDESWCYGYDP
FT                 ETKQASSQWRTPNSPRPKKARQVRSNVKTMIIVFFYVRGIVHREFVPPGQT
FT                 VNQHFYLDVLRRLREDVRRKRPELWRSGDWFLHHDNAPAHTALRVTHYLAS
FT                 QRWSVVPHAPYSPDLAPCDFFLFPRMKKKTAKRGAL"
XX
SQ   Sequence 956 BP; 269 A; 205 C; 247 G; 235 T; 0 other;
     cgagggggga cccaaaagaa accggactcc gagggcgctg ccattcgtag acgtagtaca        60
     gggttctcac gctagatggc gttagtagag accttcatga aacagctgtg cagacggcgt       120
     cagtgtagag ctgaacgtgc aagtgtggta ttgtgtttct ctgactgttg gcgggttacc       180
     cctgcgaagt cgttatggca actttaaaag aacaatgaat tttgtttctc taaaaaactg       240
     caacgagaca aatgcttcag gaagtttcca ggacttgaac aaagtcatta caggggatga       300
     gagttggtgt tacgggtatg acccagaaac caagcaagcg tcaagccagt ggaggactcc       360
     caactctccc agaccaaaaa aagcaaggca agtgaggtca aatgtgaaga cgatgatcat       420
     tgtctttttt tatgttcgtg gaattgtgca tcgggaattc gtaccccctg gccagactgt       480
     taaccagcac ttttacttgg atgttttaag gcgtctgcga gaggatgtga ggaggaaacg       540
     cccggaactt tggcgatcag gtgactggtt tctgcatcac gacaacgctc cagcacacac       600
     ggccttacga gtgacccact atttggcatc tcagaggtgg tctgtcgttc cccacgctcc       660
     gtattcgccg gacctagccc cgtgcgactt tttcctattt ccacgaatga aaaaaaaaac       720
     cgctaaaagg ggagcgttat gatgatgtgg aggcggtaaa aacagcttcg caaagggcac       780
     tggacaatat caaacttgaa gagttccaaa catgcttcca acagtgggaa aagagacttg       840
     acaagtgcat cgcatgtaat ggagagtatt ttgaaggtga ctgaagtaat tttgtaaaaa       900
     ggttcatcaa taaatttttt atgacaaaaa tccggtttct tttgggtccc ccctcg           956
//
ID   Mariner-59N1_HSal repbase;    DNA;    INV; 1037 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-59N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1037
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 903-903 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 1037 BP; 301 A; 194 C; 215 G; 326 T; 1 other;
     cagggtgagg aaaaaatacc gggaccccga aatatatcga aaaatataat ttttatgaaa        60
     aaatgtttca gacaaaagtt gtagggtttc aagtaacgca ttacatagca atatcagtat       120
     gaccttgaat agcgttgtca aggtcacgtg aaggtcatct taaatttctt aaatggaacc       180
     ccctattttt cattacatat tcttgtagct tatctcgagg gctttccaaa acactataac       240
     tgaatgtttt ttcgttaggt attttkcgag ttacaagact taaaagttgc agtaccgccg       300
     gcattagcat tacccaaggt gtaccgcgtg gaggttgcat ggtcggattt acacctcttt       360
     tgtgcgtgcg tgtgtgtgtg tgtgtgcgcg cgtgtgtgtg tgcgtgtgta tgcgcgtgtg       420
     tgtgtgtgtg tgtgaggtgc accgtcgatt ttgctatttt catttttgtg tgcgataacc       480
     ctatttccaa ttttaacatt agactggctc attgtcagac tgttaatagc cagcaatttg       540
     agcatttatt atgaatgtaa acgctcagaa acatgtagcg gtatttacgc acatttaaat       600
     aaaaatatgt atgtatgtat gtacacacga gggcacaagt cgcgcgccgc gcgcgcacac       660
     acacacacac acacacaaaa gaggtgtaaa tccgaccatg caacctccac gcggtacacc       720
     ttgggtaatg ctaatgccgg cggtactgca acttttaagt cttgtaactt aaaaaatacc       780
     taacgaaaaa acatttagtt atagtgtttt ggaaagccct cgagataagc tacaagaata       840
     tgtaatgaaa aatagggggt tccatttaag aaatttaaga tgaccttcac gtgaccttga       900
     caacgctatt caaggtcata ctaatattgc tatgtaatgc gttacttgaa accctacaac       960
     ttttgtctga aacatttttt tataaaaatt atatttttcg atatatttcg gggttccggt      1020
     attttttcct caccctg                                                     1037
//
ID   Mariner-59_HSal repbase;    DNA;    INV; 2158 BP.
XX
AC   .
XX
DT   11-APR-2012 (Rel. 19.04, Created)
DT   11-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-59_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2158
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 904-904 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           552..1625
FT                 /product="Mariner-59_HSal_1p"
FT                 /translation="MLRLSERERISLLMMRGWGDRLRSYNDVKQLFNETFR
FT                 DQDTAISKSTVERTIKRFEETGSVKNRAISGRPASATNPEKSLDVLQSFIE
FT                 NPHDSTRKVGQQNDLDKKSVLKILKLNKFHPYKVHLVQELSDDDFDRRIEF
FT                 CELMMERIDEDPNYLSNIVFSDEATFQLNGYVNRHNCRFWSDTNPNWIQEA
FT                 HTQYPQKLNVWAGILNNVLIGPFFIEGNLTAIKYENMLRNEIVPAIQAITG
FT                 DDFENTWFQQDGAAPHYGRDVRNYLNTVFPQRWIGRRGPVEWPPRSPDLSP
FT                 LDYFLWGYLKDRVYKTNPQNLDDLRNRILDEAAIIPIDYIQNAVSSFYDRV
FT                 AFCQTVDGGHFEQLL"
XX
SQ   Sequence 2158 BP; 682 A; 380 C; 426 G; 670 T; 0 other;
     cagggtgagg aaaaaatacc gggaccccga aatatatcga aaaatataat ttttatgaaa        60
     aaatgtttca gacaaaagtt gtagggtttc aagtaacgca ttacatagca atatcagtat       120
     gaccttgaat agcgttgtca aggtcacgtg aaggtcatct taaatttctt aaatggaacc       180
     ccctattttt cattacatat tcttgtagct tatctcgagg gctttccaaa acactataac       240
     tgaatgtttt ttcgttaagt attttgcgag ttacaagatt taaaagttac agtaccgccg       300
     gcattagcat tacccaaggt gtaccgcgtg gaggttgcac gcctgcgcga tttcgacttt       360
     ctcttaaaat acaaagtgaa aggaatatta aatatttcga ttttcgaatt cgagcaacag       420
     ttaagaaaca gcattagctg tcgtcacttg catttcattc agtcattatt cttcagcatt       480
     gtctttagaa aaactttgaa ttgatccaag tattaattta ttcggtttga ctaattcttc       540
     cgcttgtcaa tatgctacgt ctttcagagc gagaacgcat atctcttctg atgatgagag       600
     gatggggtga tcgattaagg tcgtataatg atgtaaagca gctttttaat gaaacatttc       660
     gtgatcaaga tactgccatt tcaaaatcta ctgttgagag aacaataaag cgttttgagg       720
     aaactggtag tgtgaaaaat cgtgcaatat caggtagacc tgcatcagca acaaatccag       780
     aaaaatcatt agatgtttta caatccttca tcgaaaatcc gcatgattct acccgcaaag       840
     taggacagca aaatgatcta gataaaaaat ctgtgcttaa aatattaaaa cttaataaat       900
     ttcatcctta taaagtccac ctcgtgcaag agctaagtga tgatgatttt gataggcgca       960
     ttgaattttg tgagttgatg atggaaagaa tagatgaaga tcctaactat ctgtcaaata      1020
     tagtcttttc agatgaagca acatttcagt taaatggcta tgttaatcga cacaattgta      1080
     gattctggtc agatacaaat cctaactgga ttcaagaagc acatacgcag tatccacaaa      1140
     aattgaatgt ttgggcaggc attttgaata atgttctcat aggtccattc tttattgaag      1200
     gcaatctaac agcgataaaa tatgagaata tgctaagaaa tgaaatagtt ccagcgatac      1260
     aagcaatcac gggtgacgac ttcgagaata catggtttca gcaagatggt gctgcgccac      1320
     attacgggag ggacgtccgt aattatctga atacagtatt tcctcagcga tggataggca      1380
     gaagaggacc tgtagaatgg cctcctcgat cgccagattt gtcacctctt gattactttc      1440
     tgtggggcta tttaaaagac agagtttata aaacgaatcc acaaaatctg gatgatttac      1500
     gaaatcggat tcttgatgaa gctgctatta ttcctattga ttacattcaa aatgccgttt      1560
     catcttttta cgatagggta gctttttgtc aaactgttga tggtggacat tttgaacaat      1620
     tgctataaac ctttccagtc ttgccttagt tgggtggaca gtcttgcctt agttggctgg      1680
     acagtctcgc cttagttggc tggacagtct tgccttagtt ggctggacag tctcgcctta      1740
     gttggctgga caattggcga tctcgccttc gtgagctaga catcttacca taaaaagctc      1800
     gataacttcg aaatgactta cttaaagtgg gtaaagtggg taagctttga aaagatctga      1860
     agaagtgcta caagaactta tcttgtaact cgcaaaatat ttaacgaaaa accattaagt      1920
     tatagtgttt tggaaagccc tcgagataag ctacaagaat atgtaatgaa aaataggggg      1980
     ttccatttaa gaaatttaag atgaccttca cgtgaccttg acaacgctat tcaaggtcat      2040
     actgatattg ctaagtaatg cgttacttga aaccctacaa cttttgtctg aaacattttt      2100
     tcataaaaat tatatttttc gatatatttc ggggtcccgg tattttttcc tcaccctg        2158
//
ID   Mariner-59_LMi repbase;    DNA;    INV; 1586 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-59_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1586
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 54-54 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(479..931,900..1079,1054..1335)
FT                 /product="Mariner-59_LMi_1p"
FT                 /translation="QSAAYRTSKTFSVREESYIIRKIKKEPKLSAPKLTTE
FT                 IAKDLGKEVHPETIRRVLRRGNFHGRIARRKPFISKVNQKKRMLFAKEHVR
FT                 EDNLWWNDVTFADESKFNIFQSDGRITVWRRPNTELQEQNLKATVKYGGGH
FT                 VMVWGCMSANELWCGGACRQMSCELVFIEGKMDQFQYLRILKDNIKKSAEK
FT                 WGLVNILSFIKITTRNIRRGMRPETYGVECEDMVIVCPKVLHPPPQSPDLN
FT                 VIENLWEKIDKEVRKTTITSKEQLKNRLQEEWQKISPEYTRKLVESMPSCL
FT                 TEVIKMKGMPTRY"
XX
SQ   Sequence 1586 BP; 540 A; 265 C; 363 G; 417 T; 1 other;
     cagtgactca cataattatt cggacactta ctaataacta gcctttgcga caccctggta        60
     ccatgattca taggaaatgt tgtacacgca aactagtttt taatatccca gtctgacaga       120
     ttcaacacca cggtaaaatg tttactttta gaaagctgga gagaaccagt gaccctggaa       180
     ccacagaacg ccgtaagcgt gcgtcaacac aattattcgg acacatagtc gtgcagaggc       240
     cgtgtgtagg ggagctacgg acgttgtgaa cgtaaacatt cagctagtca gtgtgctgtg       300
     tacacctgaa gtaacgatgg gccgcagagg agaagagaaa gcacattcga acagcggcag       360
     ctagtgattt ttcatcatgc caaaggcaaa agttgtcgaa aaattgctga tatgttaaaa       420
     atgaagagaa gtactgtttc ggatatatca gaagattcca agaggaagat aggattgaca       480
     gtctgccgca taccggacgt ccaagacgtt ttctgtgaga gaagagagtt acataatcag       540
     aaaaataaaa aaggaaccca agttaagtgc tccaaaactc actactgaga tcgccaaaga       600
     cctcggaaag gaagtgcatc ccgaaacaat acggagagtt ctcagaagag gtaacttcca       660
     cggccgtatt gcaagacgga agcccttcat aagtaaagta aatcaaaaga agagaatgct       720
     gtttgccaaa gagcatgtta gagaagacaa tttatggtgg aatgacgtta catttgctga       780
     tgagagtaaa tttaacatat ttcagtcaga tggaaggata acggtttggc ggcgtcctaa       840
     tactgagctt caagagcaaa atctaaaagc aactgtgaag tatggcggtg gacatgtaat       900
     ggtgtggggg tgcatgtcgg caaatgagtt gtgaattggt ttttattgag ggtaaaatgg       960
     accaatttca gtaccttaga atactgaagg acaatatcaa aaagagtgcc gaaaaatggg      1020
     gattggtgaa cattttaagt tttatcaaga taacgacccg aaacatacgg cgtggaatgt      1080
     gaggatatgg ttattgtttg tccaaaggtg cttcatcctc cccctcaatc accagacttg      1140
     aatgtgattg agaatctttg ggaaaaaatt gataaagaag taaggaaaac aacaatcaca      1200
     tcgaaagaac aactgaaaaa cagacttcaa gaagagtggc agaaaatatc acccgagtat      1260
     acccggaaat tagtggagag catgccaagt tgtctcacag aagtaattaa gatgaaagga      1320
     atgcctacca gatactgaac tttttggacc atcagtagaa agatgagtgt ccgaataatt      1380
     ttgtggaatg ttggttttgt ttttgatttt gtttattaat tattttgttt gtatgttcac      1440
     tgttctttag aagtaaaatg gacgtttgtt tttacattcc wtacagaact tgtatttaat      1500
     ttatatcagt gctttactat tactgaaatc actaatacaa agggaaatat aatacacatg      1560
     ttgtcgaata attatgcgag tcactg                                           1586
//
ID   Mariner-5N1_ACe repbase;    DNA;    INV; 122 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-5_ACe; Mariner-5N1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-122
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 513-513 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~94% identical to the consensus.
XX
SQ   Sequence 122 BP; 37 A; 26 C; 18 G; 41 T; 0 other;
     ttgggttgtc cggaaagttc gtgccgacta acctatataa tttaataaat gtatactaaa        60
     atttaaattt tctgcgtttc aattttcctt caacatcggc acgaactttc cggacaaccc       120
     aa                                                                      122
//
ID   Mariner-5N1_LMi repbase;    DNA;    INV; 748 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.11, Created)
DT   10-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   -5_LMi; Mariner-5N1_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-748
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2914-2914 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 748 BP; 223 A; 123 C; 181 G; 221 T; 0 other;
     cgaggcgtgt ttttttaagt aagtaccgtt ttgaaattta aaaaagacgt gctaagatat        60
     ctcaataatt ttatgcgcac tgggtaccta catctgttgt ctacgcactg acgccattac       120
     agtctgattc ttccttgttt acgttgtgta ctgagtgttt aagatgcctc cgataatcgt       180
     gagtcccgcc gactgtgaag tacgggctgt tataagattt cttagtgcta aaggcctaaa       240
     agcgatcgat attcatcgtg agatctgtgc agtttacgga gaaaacatta tgagtgatgg       300
     aatggtaaga aagtgggtga gagcatttaa agatggccgc acaaatgtgc atgatgaaca       360
     acggagtggg cgtccttcgg tcgttaatga aagtttggtg caggaagtgg acaataaggt       420
     gagagaaaac agacgcttta cgatttcctc cttgcgggat gactttccta atgtttctcg       480
     tagtgttttg tatggcattg tgaccgagca agacgatgac gaagtcaaaa cagttgtgat       540
     gcagtggtta acaagtcagg cggcagactt ctatgaggag ggtattcaaa aactggtaca       600
     acgttatgac aagtgcctca atattgacgg aaattatgta gaaaagtaga ttaaggtaca       660
     ggctttcatg taaaaataaa attattgaga tatcttagca cgtctttttt taatttcaaa       720
     acggtactta cttaaaaaac acgcctcg                                          748
//
ID   Mariner-5N2_LMi repbase;    DNA;    INV; 709 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 19.11, Created)
DT   16-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   -5_LMi; Mariner-5N2_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-709
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2915-2915 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 709 BP; 192 A; 140 C; 175 G; 202 T; 0 other;
     cgaggcgcgt tttttaagta agttccgttt tgttgtagac actagtagtt cgcgcacata        60
     ccgcaacgag cgcgtgcgtc gtgtaccggc atgcctcggg aacaactgtg ctcagtttca       120
     gctctgtagc taacctgtac ggttctgttc tgtgctttca aaatgtttaa gactatcaac       180
     tcgcccgccg cgtgtgaggt tcgctcagtg atatggtttt tgtcaccaag gaacctgtct       240
     gctgcagaaa ttcatcgaca gatttgcgaa gtgtacggtg atactgttat gagtaaaggc       300
     aaagtgcgta agtgggtacg agaattcaaa gatgactgtg acaacgtcca tgatgaggac       360
     cgctccggtc gcccatcttc gattacagac gatttggagg tttcagctga agcgaggatt       420
     cgtgagaaca ggagcttcac aataacaggt ctctcaaacg aatttcctga cgtgtcgaga       480
     tcagtgcttt acaaaacggc agtgaactct tggttatcgg aacaggcggc aagattgtat       540
     gaagagggta ttttaaaatt ggttgagagg catgataagt gtttgaacaa acttggcaac       600
     tatgtcgaaa aataaagtat gtactttctg aaaataaatt tacttttttg aaataacctt       660
     tcgttgtgta cttctgttca aacggaactt acttaaaaaa cgcgcctcg                   709
//
ID   Mariner-5_ACe repbase;    DNA;    INV; 1286 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.03, Created)
DT   09-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1286
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 514-514 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 93% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..1206
FT                 /product="Mariner-5_ACe_1p"
FT                 /translation="MRTYRKRRYFRHTWKKIWLRYVNFCQFYTPLNMEENK
FT                 VHFRHLMLFFYRKGKNATQAANKICAVYGEGAVAERTVRKWFARFKAGDFN
FT                 LEDQERPGRPSTTDEDQIKTLIENNPRYTTRKLAEMLNMSKSTIHEHFVKL
FT                 GYINRFDVWVPHDLTEKNLMDRISICDSLYKRNEETPFLKQVVTGDEKWII
FT                 YNNVERKRSWGKRNEPPLATPKAGLHPKKVMLCVWWDWKGILYYELLPNNE
FT                 TINSEKYCSQLDELKTAIEQKRPEIANRKGVVFHQDNARPHVSLITRQKLL
FT                 ELGWDVLPHPPYSPDLAPSDFHLFRSLQNSLNGKSFNSLVEVKNHLEKFFA
FT                 EKPERFWKDGIFKLPERWRKVVEQNGTYII"
XX
SQ   Sequence 1286 BP; 413 A; 247 C; 285 G; 341 T; 0 other;
     ttgggttgtc cggaaagttc gtgccgattt ttggtaggtg gcgtaaggac aggtctgaat        60
     atatcagaac gattgaaaac aaatgacatg cgtacatatc gtaaaagacg gtacttcagg       120
     catacttgga aaaaaatttg gttgcgatac gttaattttt gtcagtttta tacgcctttg       180
     aatatggaag aaaacaaagt gcattttagg catttaatgc ttttctttta ccggaaaggc       240
     aaaaatgcca cacaagcggc aaacaagata tgcgctgttt atggcgaagg tgctgtagct       300
     gaaagaactg tgcggaagtg gtttgctagg tttaaagctg gtgatttcaa ccttgaagat       360
     caagaacgcc cgggtaggcc ctccaccaca gatgaagatc agattaaaac actgatcgag       420
     aataacccac gctatacgac acgtaaatta gcagaaatgt tgaatatgtc aaaatccacc       480
     atccacgagc attttgtgaa gcttggctac ataaaccgtt ttgatgtatg ggttccccac       540
     gatttaacgg agaaaaatct gatggatcgc atttccattt gcgactcgct ctataaacgc       600
     aacgaggaga caccattttt gaagcaagta gtgacggggg atgaaaaatg gatcatttac       660
     aataatgttg agcgaaaaag atcttgggga aagcggaatg aaccaccttt agccacccca       720
     aaagccggtc ttcatccaaa gaaggtcatg ctctgtgtct ggtgggattg gaaagggatc       780
     ctgtattatg agcttttacc aaacaacgag acgataaatt cagagaagta ttgttcccaa       840
     ttagacgaat tgaagacagc aattgaacaa aaacgtccag aaatagcgaa tcggaagggc       900
     gtcgtgtttc atcaggacaa tgcgcggcct catgtgtctt tgataactcg acaaaagttg       960
     ttggagctcg gttgggatgt tctaccccat ccaccatatt caccagacct cgcgccctct      1020
     gatttccacc tatttcgatc attacaaaat tcccttaatg gaaaaagctt caactctttg      1080
     gtcgaggtaa aaaatcactt agaaaagttt ttcgctgaaa aacctgagag attctggaag      1140
     gacggaattt tcaagttgcc tgaaagatgg agaaaggttg tagaacagaa tggcacctat      1200
     ataatttaat aaatgtatac taaaatttaa atcttctgcg tttcaatttt ccttcaaaat      1260
     cggcacgaac tttccggaca acccaa                                           1286
//
ID   Mariner-5_AEc repbase;    DNA;    INV; 1304 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1304
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 547-547 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1231
FT                 /product="Mariner-5_AEc_1p"
FT                 /translation="MEKNEFRAVIKHLHMKGLTPKEIKAELDNVHSTSAPA
FT                 FATVYNWVNEFKRGRTSTCDAPRSGRPIEAATPEIIDKVHDIVLTDRRVKV
FT                 RELVEATGISHGTVISILHEQLGMKKLSARWVPRLLTVDHKRDRVTISKQC
FT                 LEMFQRNPDEFLRRFITVDETWIHYFTPETKEQSKQWTSPSEPAPKKAKTV
FT                 KSAGKVMATVFWDARGIIHIDYLPSKQTINGDYYAALLDRFNNILKKKRPH
FT                 LAKKKVLFHQDNARVHTCPAPMAKFNEFRYELLPHPAYSPDLAPCDYFLFP
FT                 NLKKWFGGKRFTTREQLIAETEAYFEGLDKSYYSDGLKKLENRWIKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1304 BP; 398 A; 271 C; 295 G; 340 T; 0 other;
     ttatacgagg gcaagtcaat aagttcttag aaaatctgtc agagggcact cgcagtgtca        60
     tgtcacatta ctttttgaca agtagcatct ttcagctgat tactgtcaaa ttttgagcgg       120
     aattcatcgc gtggtttcat ttctgtagac gattaaagcg aacaaccttt gtattttttg       180
     caaaatggaa aaaaacgagt ttcgtgcagt gatcaaacat ctacatatga aaggtttaac       240
     gccgaaagaa atcaaagccg agttggataa tgttcatagc acatctgcac cagcgtttgc       300
     gactgtatac aattgggtga atgaatttaa acgtggtcgt acatccacat gtgatgcacc       360
     tcgttcggga cgtccaattg aggctgctac gccagaaatc atcgataaag tccacgatat       420
     tgttttgact gatcgacgag tgaaagtgcg cgagcttgtt gaggccacag gcatatcaca       480
     tggcacagtg atttcaattt tgcacgaaca attgggtatg aaaaagctat cggcaagatg       540
     ggtgccgcgt ttgctcactg tggaccataa gcgcgaccgt gtgacgattt caaaacaatg       600
     tttggagatg tttcaacgta atccagatga atttctgcgt cgattcatta ctgtggacga       660
     aacatggatc cattacttca cacccgagac gaaggaacag tcaaaacaat ggacttcacc       720
     gagtgaacca gctccgaaga aggcgaagac cgtgaagtcg gccggaaagg tgatggccac       780
     agttttttgg gatgcacgcg gtataattca tatcgattac cttccgtcga agcaaacgat       840
     caatggcgat tactacgcag ccttattgga ccgtttcaac aacattttaa agaaaaaacg       900
     tccccatttg gcgaagaaga aagtgctctt ccatcaagac aatgcacggg ttcacacgtg       960
     cccggcaccg atggccaaat tcaacgaatt ccgctacgaa ttgcttcccc atccagcata      1020
     ttcgccagat ttagccccct gcgactattt cctgtttcca aacctgaaga aatggttcgg      1080
     aggaaagaga ttcaccacca gagagcagct catcgccgaa acagaggctt attttgaagg      1140
     gttggacaaa tcatattatt cggacggctt gaaaaagttg gagaatcgtt ggatcaagtg      1200
     tatcgagctg aaaggagact atgttgagaa ataaaaatga atcgatcaaa aaaaatgtgt      1260
     tttactatgt ttttctaaaa acttattgac ttgccctcgt ataa                       1304
//
ID   Mariner-5_BM repbase;    DNA;    INV; 1316 BP.
XX
AC   .
XX
DT   26-APR-2010 (Rel. 15.07, Created)
DT   26-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1316
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 940-940 (2010).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           154..1191
FT                 /product="Mariner-5_BM_1p"
FT                 /translation="MEWGVKENRIAVIALHKVGMEPSVIFQTLQKLGISRM
FT                 FVYRTINRYNNTSSVEDQKRSGRPRAVRTTKAVNAVKARIRRNPIRKQKIL
FT                 SREMKIPARTLSRIIKQDLKLGAYRRYTGHALNQSLQLKRVDRSKRLLSRY
FT                 AGERHRNILFTDEKIFTIEEHYNKQNDKVYAHSSKEAAQVVGKVQRGHHPA
FT                 SVMVWWGVSYQGVTKLHFCEKGVKTSAKVYQDTVLDHVVKPLSNTLFKNIP
FT                 WTFQQDSAPGHKARTTQAWLETNVPDFIRAEDWPSSSPDLNPLDFKLWSVL
FT                 EDMACSKRHGDIESLKKSLEQAVAKFPLETVRKSIDSWPNRLKACIKAKGG
FT                 HFE"
XX
SQ   Sequence 1316 BP; 423 A; 256 C; 260 G; 377 T; 0 other;
     taactagtct ggccataaat actgttacat aaaaactttt tttttttcaa ctttttaatt        60
     attttgaatt tggaacacgt atattatttt aaaaacttct ttcgattttg cgccatttca       120
     catatttttt cgtgttcatt atcaaattac aatatggaat ggggtgttaa agaaaatagg       180
     attgcagtga tcgccttgca caaagtgggt atggagccgt cggtcatatt ccagacactt       240
     caaaagcttg gtatcagccg tatgttcgta tatcgtacta tcaacagata caacaacact       300
     tcgtctgtcg aagaccagaa aagatcgggg cggccgcgtg ctgttagaac tacaaaggct       360
     gttaatgctg ttaaagccag aattcgtcga aaccccatta ggaagcaaaa aatcttatcg       420
     cgagaaatga agattcccgc taggactctg tcgcgtatta taaaacaaga cctgaagctc       480
     ggtgcttatc gtcgatatac aggacatgcc ctaaatcaat ctttacaatt aaagagagtg       540
     gatcgatcaa aacgccttct gtcgcgatac gcaggtgaaa ggcacagaaa tatcctcttt       600
     accgatgaaa aaattttcac gattgaagaa cactacaata agcaaaatga taaagtgtac       660
     gctcacagtt ctaaagaagc tgctcaagtg gtcggaaagg tacaacgtgg tcatcatcct       720
     gcgtcagtga tggtttggtg gggcgtgtct tatcaaggag tcacaaaact acatttttgt       780
     gaaaaaggag tgaaaacttc agccaaagtg tatcaagata cagtcttgga tcatgttgtg       840
     aaacctctca gcaatacact ttttaaaaat ataccgtgga ctttccagca ggactctgca       900
     cctggtcaca aggcacgaac tacccaagcc tggcttgaaa ccaacgttcc ggactttata       960
     agagctgaag actggccctc atctagccca gacctcaacc ctttagactt caaattatgg      1020
     tcagttttag aggacatggc ctgctctaaa cgacacggcg acattgagtc tcttaaaaaa      1080
     tctttggagc aagcagtggc gaaatttccc ttggaaacag tgcgtaaatc catagattcg      1140
     tggccaaaca gattaaaggc ctgtataaaa gccaaaggtg gccatttcga atagaatatt      1200
     tttttttttt gctgagactt taataaatat gtaggtataa attttaataa tattacatta      1260
     cttcattaaa aaaaatgcat tttcatttgt aacagaactt atggctggac taggta          1316
//
ID   Mariner-5_CFl repbase;    DNA;    INV; 1541 BP.
XX
AC   .
XX
DT   19-FEB-2012 (Rel. 19.04, Created)
DT   19-FEB-2012 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1541
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 829-829 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           414..1337
FT                 /product="Mariner-5_CFl_1p"
FT                 /translation="MYGTLNDRRHDLPGPSRTVTTDETIDDVRNYFDENPN
FT                 TSIRKAAQVLDLKRETLRKIMRDVIKLHPYKITTHQLLTEKAMEKRVEFCK
FT                 VITNMFESEELDEKQIIFTDEAHFWLNGYVNKQNYRFWGQENPNVSIAVPL
FT                 HPQKVSAWAAISVKGVYLQFFEGTVTSQSYKELLETKFFPHAKKRGLVKNF
FT                 HFMQDGATPHRTREVFESIHEVYGNRVIGLGYPKFAHGGLEWPPYSPDLNP
FT                 CDFFLWGYLKDKCYAVQPQNTAELINSIKKCTRSIPTSMLDNVFQSFCKRL
FT                 QFCANSNGQHFENIYH"
XX
SQ   Sequence 1541 BP; 478 A; 282 C; 293 G; 488 T; 0 other;
     tagggtgacc aatgggaatg tgttgaaagt aaacggttat atatcccctc ctcgatttcg        60
     gtaactgttt taccgactag ggtccgctac ctaagacccg tcaatttcat ttgaaccgtc       120
     gtataaaccg atttgcgagt tataggatgg acgcgctaag catcgaagaa aaagtgtttc       180
     tcatcgagtg cttctatagt agaggcaaaa actatagtca ggcgtatcgt ggattccgta       240
     gtaaatatgg atctaaaaaa gtttcaagcg aaacaatatt cagaaggtat gtttttgata       300
     ctttttaccc acgctccctc tccctggaat cgcgtcatca ttccaatgtt ggttaggtaa       360
     gattttattt ttatttgtcg atattttttg gcaggattat tgataatttt ggtatgtatg       420
     gcactttgaa cgatcgtaga catgatttac ctggcccatc tcgtaccgtt acaacggacg       480
     aaacaattga tgacgttaga aattattttg acgaaaatcc aaacacctcg attaggaaag       540
     ctgctcaggt tttggattta aagcgagaaa ctctccgaaa aataatgaga gacgtcatta       600
     aactgcatcc ctacaaaatc actacacatc aattgctgac ggagaaagcg atggaaaaac       660
     gagttgagtt ttgtaaggtg ataaccaata tgtttgaaag tgaggaactc gatgaaaaac       720
     aaataatatt tacggatgaa gctcactttt ggttaaacgg atatgtcaac aaacaaaatt       780
     atcggttttg gggacaggaa aatccaaacg tgtctattgc cgttcctctt catcctcaaa       840
     aggtctccgc gtgggctgca atttctgtaa aaggggtcta cctgcaattt tttgaaggaa       900
     ctgtgactag tcaaagttat aaagaattat tggagactaa attctttccc catgcaaaga       960
     aacgcggatt agtaaagaac ttccatttta tgcaggatgg cgcgacccca catcgtacac      1020
     gcgaagtctt tgaatcgata catgaagtgt atggcaacag agtaattgga ttaggatacc      1080
     cgaaatttgc tcatggaggt ctggaatggc ctccttattc acctgatttg aacccgtgtg      1140
     atttttttct ttggggttac ctcaaagaca aatgttacgc cgtacaacct caaaacaccg      1200
     cagagctgat aaatagtatt aaaaaatgca ctcgcagcat tcctacatct atgttagata      1260
     atgtatttca aagtttttgc aaacgattgc agttctgtgc taattctaat ggacaacact      1320
     ttgaaaacat ataccattaa ttcatatgcg caagcaaaat ttttcttttt tttttttata      1380
     ttgtgtattt caattgttaa attattatat ttctctttca tatatatggt aataaaattg      1440
     acaagttttc tctacaaaat ggcgtttaat tcattttatt cggcctattt gttacgaagt      1500
     aataactatt tactttcaac acattcccat tggtcaccct a                          1541
//
ID   Mariner-5_DAn repbase;    DNA;    INV; 1635 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1635
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 261-261 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~40-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(334..768,772..1335,1274..1591)
FT                 /product="Mariner-5_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MGRGRHCSAEKRKLIRGLRDEGKTYKSIAVLMKRSQN
FT                 FVTNALKPKKVGETRRTPKKTSSRADDRMVQLVIRDPFKSSRTISNEIGNI
FT                 VSSRTVRRRLAMSNLPGRIARKVPLLRPKNKEMRKQFALDRKAWSGPEGEK
FT                 KWHNILSDETKINLFGNDAKRNVHRPKGKEFDPKYTCKTVKHGGGSLIVWG
FT                 CFSCNGVGQIHRIDGKMDRFVYRDLLETVMLPYSKDNMPILWKFQQDNDPK
FT                 HASLLVREWFREQNVDVLEWPSQSPDLNPIENLWGELKREVGKSSCQNKNQ
FT                 LWDIVQRAWYSIPIGTCRNLISSMPRQMEKVLKNNGEYTGYYHPCQDKWRK
FT                 FSKIMASIPATNCYILNLMYKKIKNSEISILFKRLVPYTYYCVQPKMSNLG
FT                 KNLLLLLMKRFIVLFLFFLLKTINISFKKTLFRADWRKHDLEITS"
XX
SQ   Sequence 1635 BP; 563 A; 273 C; 335 G; 464 T; 0 other;
     cactcatgga caaaataata ggtgtgaatt tttttttttg aggatatcga ttttaattga        60
     tataaacata acatattatg ggaaaactat acttttttat tatgatcaca ctgttacgat       120
     caatttttgg tgaattcccg gaagtcagaa gctctctaaa gaaaattgtg gatattttat       180
     tgctcagact gcaaattcgc ctggacaata aaataggtgt gtcgagcaaa actttattct       240
     aaagctaatt atgatagttg tttggttgca gaaggtaagg tattacgata atttaactaa       300
     atggggactt aacaatcact aaaattgcat taaatgggcc gtgggagaca ttgcagtgcg       360
     gaaaagagga agctcattcg aggactccga gacgaaggaa aaacatataa atcgattgct       420
     gttttaatga aacgatctca gaattttgta accaatgcgt taaaaccgaa aaaagtaggt       480
     gaaactcgga gaacacccaa aaaaacatca tctagggccg atgatcgcat ggttcagttg       540
     gttatacgag acccgttcaa gtcttccagg acgatttcca acgaaattgg aaatattgtg       600
     tcatcacgga ccgttcggcg acgtttggca atgtcaaacc taccaggtag gattgcccgc       660
     aaagttcctt tgcttcggcc gaaaaataaa gagatgagga aacaatttgc tctagatcgt       720
     aaagcctggt caggaccgga gggtgagaaa aaatggcata acattctctg aagtgacgaa       780
     accaaaataa atttatttgg aaatgatgct aaaaggaatg ttcaccgtcc gaaaggcaaa       840
     gaatttgatc caaagtacac ctgtaagact gtaaaacatg gaggtggtag cctaatagta       900
     tggggctgct tttcatgcaa tggtgttggt cagattcatc gcattgatgg aaaaatggac       960
     agattcgtat acagagactt attggagaca gtgatgctgc catattctaa ggataatatg      1020
     ccaattttat ggaagttcca gcaggataac gacccaaaac acgcctctct actagtcagg      1080
     gagtggtttc gtgagcaaaa tgtggatgtt cttgaatggc cgagtcaatc ccctgacctt      1140
     aatcccatcg aaaatctctg gggtgaactc aaaagagagg taggaaagtc ttcttgtcaa      1200
     aataaaaacc aactttggga tattgtccaa agagcatggt actccatccc aattggaact      1260
     tgtcgcaatc tgatatcatc catgccaaga caaatggaga aagttctcaa aaataatggc      1320
     gagtataccg gctactaact gctacatact caacttaatg tacaaaaaga tcaaaaatag      1380
     tgaaatatcc attttgttta aacgtttagt tccttacacc tattattgtg tccagccaaa      1440
     aatgtccaat ttgggaaaaa atctacttct gttgttaatg aaaaggttta tagtattgtt      1500
     tctttttttt cttttaaaga caattaatat aagttttaaa aaaactttgt ttcgagctga      1560
     ttggagaaag catgacttag aaataacaag ttaaaaatga aaaaaaaaac acacctatta      1620
     ttttgtccat gagtg                                                       1635
//
ID   Mariner-5_DBi repbase;    DNA;    INV; 1115 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-5_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1115
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 740-740 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 29-bp TIRs. TA TSDs. ~95% identical
CC   to Mariner-4_SIn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1115 BP; 295 A; 264 C; 290 G; 265 T; 1 other;
     cgagggcagt ccgataagta ctwagcctca ccgcccgatg gcgtcactat cgcaagagaa        60
     atttactatc gtgtagtaca ttctcgtaga cggctactgt cgaaatttca gccgaatcgg       120
     actcgtagtt ttgttttgac tgcgtgtgga atcggacgtg tccgcggatt ttagaaaaat       180
     ggagaaagag caatatcggt ctgtgattcg attcttgttt ttggaaggga aatcgcgcag       240
     cgaaatcaaa gagcgcttgg atgctgtgta cggtgactct tctccttcga tggcgaccgt       300
     caaaaattgg tttaacgagc ttcaacgtgg tcgcacgtcg gtttttgatg agccacgccc       360
     aggtgccccg aaaacggcta ccacagagga taacgtgaca aaaatccacg atctcgtatt       420
     ggcagaccgc cgattgaaga tacgcgagaa gctgagacag taggcatgtc aaaagaccgc       480
     gtgggtcata tcctgcatga aattttgggc atgagaaagc tgtcgggcga tgggtgccgc       540
     gtttgcctcc gaaccaaacg caaccaagaa cagtcgaaac agtggacttc acccggcaac       600
     ctgctccgaa gagggcgaag actacggccg gaaaggtgat ggccatcgct tttacatcga       660
     ctacctggag aagggcaaaa cggtcacagg gctgtactat gccgaattat tgggccgatt       720
     cgccgccgaa ttgcagaaaa tacggcccca tttggcgaga aaaaaggctc acacttccgc       780
     cctcgccaag gccaaattgg tcgaattggg ctacgaactg ctaccccatc caccatattc       840
     tccagatttg gccccgtgtg acttcttttt gtttccaaac ttgaaaaagt cactcgctgg       900
     acagaaattt gcgtcgaatg aggaggtcgt cgccgccaca gaggcctatt ttgcagacct       960
     cgagaaaacg tatttttcag acgggttaaa gaagttggag catcgctggg tcaagtgtat      1020
     cgagctaaaa ggagattatg ttgagaaata aatcgccact tttccaaaat tttcgttttt      1080
     cttttggagg ctaagtactt atcggaccac cctcg                                 1115
//
ID   Mariner-5_DBp repbase;    DNA;    INV; 1638 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1638
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 588-588 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1638 BP; 524 A; 283 C; 334 G; 483 T; 14 other;
     cagctgtgtt cactaaaata gcagtgcaat agcaacgaag taaaaggacg gtaatttttg        60
     cattttcctt ttcgttagtt satcgcttga tcattatttt tgtaaaatgg gatatggaga       120
     taggaaaagt acaaaaattt cgtaagattt gctttttatt tgcgttttct gggcattttt       180
     gttcaaaatc acaagttttt ggctgttcat waaaatagca gtttttcatt ttgatcccca       240
     aaaagcgccg aaaacattaa aaatttggtg aaaagtaagt tttcttaagt tcatttattt       300
     aatttaaatg aaaatacaca ataaccatgc aaaaatgttg attttagtgg gtaaaggaca       360
     ccactgttca aaggaagaga ggaatttgat agttcagctt agaaagcagg aaaaacccta       420
     taaaaaatcc aaaatacggt aaattkttct gccaaaatgg tatccaatgc catwaaatat       480
     gaggggaaat ccgaaacacg tgggtccaaa cgaaaaacca ccgatattgg gggccgaaga       540
     aaggtgcgct tcagcaaagc gaatcctttt gcgtcttcta gggmtgtaaa aacggwsctg       600
     aagttaagga tcagcgwcgt caccattcgc cgtcgattag taaatgaaaa tataaatacg       660
     cgaagcccac gaaaggtgcc attacttggt acaaggcata tccawgctcg attggagttt       720
     gccaaaagcc atttgaagtg gccagtgacg aaatggcgca atattcttkg gataaatgag       780
     tccaaactgg acttgtttgg tgggacaggc tcaagacagt atgtccgacg acccccaaac       840
     actgagaacc acccaaaccm cacttttaag accgttatgc acggtggccc taaaatattg       900
     gtatgggctc gtttttcgta cagcggcgtg gtcccataca tatgatggat gggatcatgg       960
     accaagacgt ctatgtcgac atactcaaaa aagtagtgct ttcttatgca cagtgagata      1020
     tgtccttaaa atggacgttt cagcaggata acgatccaaa acataccagc aaattggcta      1080
     agagttgggt tagtcaacca aacattgatg caatgtcgtg gccagcacag tccccggatt      1140
     taaatccgat tgaaaattta tggggggaca tcaagggata tgtggcaaag aaatacccga      1200
     cttcaaaacc gcagctttgg caatttktac aggacgmgtg ggcccagatt cccctcaagc      1260
     gttgccagga cttggtggac tccttgccac gtaggtgtga agctgttatt gccaataaag      1320
     gctttacgac aaaatattag tttatattta taatttctgt tgtttgtatt aagtaatttt      1380
     taagattwaa tgaatttttt agattttttt ggtaacactg ctattttaat gaacagcaca      1440
     ttttgtcgat gttattttgt tattgtctat attttcaaaa aaaacgcagt aattagactg      1500
     aaacaaatgt taacataatt aaaaataaat atattatgtg gatgtaaacc aaatttgtcc      1560
     cattttggtg tttatgctac gatttttcga tcttaaacat ttatgtcatg agcactgcta      1620
     ttttcatgaa cacagctg                                                    1638
//
ID   Mariner-5_DEl repbase;    DNA;    INV; 1054 BP.
XX
AC   .
XX
DT   20-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1054
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 417-417 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1054 BP; 277 A; 238 C; 270 G; 268 T; 1 other;
     gtggatagtt ttgtgaagcg tgtgcgtgag actggatcgt tgatggataa aacaacacgt        60
     ttacgtgctc gtccagttcg gtcggtcgaa atatcgctgc ggtggccgaa agtgtcaatg       120
     acaatccgtc gacgtcaact cggcaccgtg ctcaagagtt ggacatttcg cgcacttccc       180
     tgcaacggat tttaaccaaa gacctccgtc taaggccata taagattcag ttggttcagc       240
     agcttaagcc gcatgaccat ccaatgcgtc ttcggttcgc ggaatgggct caggagcgct       300
     tggtcgaaga tgaccatttt taccgaaaaa tcgtgttttc tgatgaggcc catttccacc       360
     tcggtggtta tgttaataag caaaactgtc gcatttgggg ttcagaaaat ccacacgtcg       420
     tcttggagaa gccaatgcat ccacaacgag tgactgtttg gtgcggtatg tggtcgggtg       480
     gcatcattgg gccgtttttc tttgaaaacg aggaaggagc cgccgtaacc gttaatggtg       540
     tccgctatcg cggcatgttg gaagactttt tctttccccg aatggaagag gaagacatag       600
     acgacatatg gttccagcag gacggcgcta cgtgccacac agccaacgtc acaatcgatt       660
     ttttgcgcgg tacgttcgaa aatcgcataa tcagccgaaa cggcgatgtc aactggccgc       720
     ctcgcagctg cgatttgacc ccgttggact attttttgtg gggtgccgtc aaggataagt       780
     gttacgccaa ccacccagag acgattgacg acctaaagca cgagattgaa gtcgccatca       840
     gggccattga gggccatacc atcgaaaatg tgtttaaaaa ttgggtcgac cgaatgggct       900
     actgtaaagc cagccgaggc agtcatatga acgaagtggt gtttcataca taaacgcaat       960
     ggctatccaa taaaaaaaaa awttgaaaaa tatatactgt tgttttttta tagcgatttt      1020
     aaaacgcaaa tctttcgtgg gccaccctgt acat                                  1054
//
ID   Mariner-5_DEu repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1639
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 757-757 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. ~740-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1639 BP; 539 A; 291 C; 286 G; 513 T; 10 other;
     cagtgatgga aaaaataata gaaacgattt ttcaattttg gtttgaatac gtatttttaa        60
     taaggaacgt ggtgatgagt ggatattttt attttttttt gwtttatata cwtctagctt       120
     acatactaaa aaacaaaaat gcatttaact ttattcattt agctaaaaaa atatatttaa       180
     gtcaaatttt atggttttga cttggaaaaa aaaatagaaa cgaagtgact tatcgccatc       240
     caaattgact agcttagcaa aattaaccat gaaatgtttt caggtttaat atattgttgc       300
     attaccatga tttttcaaaa attccgggac acctacgagg catagactcc acaggattgg       360
     agcatattgc tggcttaatg gagtaccact cctcctggac tttctccgac aaatkctcct       420
     tagtttttgg cctaaaacca ctcaaacgtt ttttaagaat gcccctcaaa tgctcaatak       480
     ggtttaagtc gggtgactaa gctgaccaat ccataacgcc gactttattg tccaggatcc       540
     ccttttttag caagctacga tgtgtctttg ggatcgttat ccttaattat aatcccactt       600
     caaaggcatt tcatcttcag catatgttaa cataacgtcc atcattatgt ttaaaaagtc       660
     tgtatcacag atattgccct gtatccaaaa taatggacca acacctgaag cagagaaaca       720
     tccccatagc attatattgc caccaaaaac caagagaccc tccagaactg gaaaaatgtc       780
     ctttggtccg atgagacaaa gattgatttg tttgtatctg atggcggact ccacgttaga       840
     tgcccaaaaa acacagcatt cgatcccaaa tacaccaaaa ggacgatcaa acatggaggt       900
     ggcaatataa tgctatgggg atgtttctct gcttcaggtg ttggtccact atwttggata       960
     cagggcaata tctgtgctac agactwttta aacataatga tggacgttat gttaacatat      1020
     gccgaagatg aaatgccttt gaagtgggat attattaagg ataacgatcc caaagacaca      1080
     tcgtagcttg ctaaaaaggg gatcctggac aataaagtcg gcgttatgga ttggtcagct      1140
     tagtcacccg acttaaaccc tattgagcat ttgaggggca ttcttaaaaa acgtttgagt      1200
     ggttttaggc caaaaamtaa ggagcatttg tsggagaaag tccaggagga gtggtactcc      1260
     attaagccag caatatgctc caatcctgtg gagtctatgc ctcgtaggtg tgccggaatt      1320
     tttgaaaaat catggtaatg caacaatata ttaaacctga aaacatttca tggttaattt      1380
     tgctaagcta gtcaatttgg atggcgataa gtcacttcgt ttctattttt ttttccaagt      1440
     caaaaacata aaatttgact taaatatatt tttttagcta aatgaataaa gttaaatgca      1500
     tttttgtttt ttagtatgta agctagatgt atataaatca aaaaaaaata aaaatatcca      1560
     ctcatcacca cgttccttat taaaaatacg tattcaaacc maaaktgaaa aatcgtttct      1620
     attatttttt ccatcactg                                                   1639
//
ID   Mariner-5_DF repbase;    DNA;    INV; 1623 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1623
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 772-772 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           366..1358
FT                 /product="Mariner-5_DF_1p"
FT                 /translation="MPRGDHLSAEERGIITAMNENGCKISEIAARVSRHRH
FT                 TIXNFIKNPKKYGEIKRSGRPSSIDXRCKREIERLAVNKQMSCNEIKRHLH
FT                 LNDTRRRVHQLLVENKNLKYSSRVPVPKLLPRHLSARLSFAEKYKFWTEEF
FT                 RKVIFSDEKKFNLDGPDGCQKYWRDIRQPRQTRHKRNHGGGSLMVWAAFGY
FT                 AGRSPICFIPTRTNAEIYTQLLDNVLIEFAGNLYGDNWTFQQDNAPIHTTR
FT                 TTKEFFSSRKIPLLEWPAISPDLNPIEDLWGILSARVYKNGRQFDTIKQLR
FT                 DALVVEWDQINDNILKGLVDSMPDRLNKVIIAKGKHINY"
XX
SQ   Sequence 1623 BP; 579 A; 267 C; 296 G; 475 T; 6 other;
     tacctcaggg aaataagtat atgtacattg atatttttaa caaaaaaacg atttaaacaa        60
     aacaaatcaa tccaactttt attggggtat gtagtactcc tatgtacaaa taaaaataat       120
     aataacaaac cttttatttt cttaaactta ttaaagaact gaattaatta ataatagttc       180
     ataggaaata agtatatata caaaaataaa ctagcgtggt ttgaatgaag agtggaagtc       240
     ttttggtcag caaattagtc cggaattgtt tttttttaag agaagagctt atttncaaac       300
     caacaaatgt aagttgatta gtgtttgtgt gaaaaatgta aatataanta gggttttacc       360
     ntggcatgcc acgcggagac catttgtcag ccgaagaacg cggaataata acagcaatga       420
     atgaaaacgg atgtaaaatt tccgaaatag ctgctagagt ttctcgacac cgacatacca       480
     ttanaaactt tatcaaaaac ccgaaaaaat atggtgaaat aaaacgctct ggcagaccta       540
     gtagcatcga cnntaggtgc aaacgcgaaa ttgagcgcct agctgtaaac aaacaaatgt       600
     cgtgcaacga gatcaaacgt catttacatc ttaatgacac taggagacgg gtccatcaac       660
     ttttagttga aaataagaac cttaaatata gttcccgagt gcctgtacct aagctgctac       720
     cacgccatct aagcgcacga ttatccttcg cggaaaaata taaattttgg acagaggaat       780
     ttcgcaaagt aattttttcg gacgaaaaaa agtttaattt agatggtcca gatgggtgtc       840
     aaaagtattg gcgcgacata aggcaaccaa ggcaaacccg gcataagcga aaccatggcg       900
     gaggctcctt gatggtttgg gctgctttcg ggtatgcggg aaggtctcca atttgtttta       960
     ttcctacaag aacgaatgca gagatatata ctcaattgtt ggacaatgtc cttatcgagt      1020
     tcgctggaaa cctttacggg gataattgga ctttccagca agacaacgca ccaatccaca      1080
     ctacacggac cacaaaggag tttttttcgt caagaaaaat tccactttta gagtggccag      1140
     ccataagccc cgacttaaat cctattgagg atctctgggg catcctttcg gccagagttt      1200
     ataaaaatgg ccgacaattt gacaccatca aacaactgag agacgctctg gtcgttgaat      1260
     gggatcaaat taatgataat attcttaaag gattggtgga ttctatgccg gatcgcctta      1320
     acaaagttat aatagcaaaa ggaaagcata taaactatta aaataactaa aaagataaaa      1380
     aatacttaca tagatattga tattatagga attactgaaa atgtatatat acttatttcc      1440
     tatgaactat tattaattaa ttcagttctt taataagttt aagaaaataa aaggtttgtt      1500
     attattattt ttatttgtac ataggagtac tacatacccc aataaaagtt ggattgattt      1560
     gttttgttta aatcgttttt ttgttaaaaa tatcaatgta catatactta tttccctgag      1620
     gta                                                                    1623
//
ID   Mariner-5_DK repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1292
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1198-1198 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 28-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1153
FT                 /product="Mariner-5_DK_1p"
FT                 /note="transposase."
FT                 /translation="MSNNRCAILKLFQQGNRQCDIVRLLGIPKQTVSDAIR
FT                 RFNELGHEGDRPGRGRPCTAKTSRIRQIVKKRITRNCRVSVRKIAREIGVN
FT                 RESVRLIAKNELNLKPYKLQKVHLLTDDNKRVRLQRCRQLKRRAAGQKWER
FT                 ILFTDEKIFTIQQAHNHQNDGSWSAEAPGTSAIIERRQCEQSLMVWGGICA
FT                 TGKTPLVFIDQGVKINQEVYRRDILETVVLPWAQQHFXDTEWTFQQDSAPA
FT                 HRAKLTQDWCKANFPDFIISSEWPPYSPDLNPMDYSVWSILESRACAKRHI
FT                 SLEALKQSLLQEWDRLSEEDLRPIALNFQKRLGLCIAAQ"
XX
SQ   Sequence 1292 BP; 379 A; 286 C; 290 G; 336 T; 1 other;
     cagggtgaca ataaataacc cggacaaatt ttgaagcaat cgattataaa tgtgttatga        60
     tgcagccctt aaataaatgc atttatagat agcttgtact tttctgaaac aaatatattt       120
     acatttttgt gatttccatc aatttgatat ttgtttcggg atgtctaaca atcgttgtgc       180
     aattttaaaa ctgtttcaac aaggaaatcg ccaatgcgac attgttcgtt tgcttggcat       240
     accaaaacaa acggtctctg acgctatccg gcgatttaat gagcttggcc atgaaggtga       300
     ccgtcccgga cgaggcagac catgcaccgc taaaacttcc agaattcgcc agatcgtgaa       360
     aaagcggatc actcggaatt gcagagtctc ggtcagaaaa atagcccgtg aaatcggagt       420
     gaatcgagaa agtgttcggt tgattgcaaa aaatgaactt aatctcaagc cctacaagct       480
     ccaaaaagtg caccttctta cggatgacaa taagcgcgtg agactccaaa gatgccgtca       540
     gctaaagcgt cgggccgcag gtcaaaaatg ggagcgtatt ctcttcacgg acgagaagat       600
     attcaccatc caacaggcgc acaatcacca aaatgacgga agctggtcgg ctgaagctcc       660
     aggtacctct gcaataatcg agcgccgtca atgtgagcag tctttaatgg tttggggagg       720
     aatatgcgcc accggcaaaa caccccttgt tttcatcgat caaggggtca aaatcaatca       780
     ggaagtgtac cgccgggaca ttttggaaac tgttgtgctt ccttgggccc agcagcactt       840
     cgstgatacg gagtggacgt ttcaacagga ttcagcgcca gcccatagag ccaaattgac       900
     tcaggactgg tgcaaagcca attttccgga ctttatcata tccagtgaat ggccacctta       960
     ctcgccagat cttaatccga tggactacag tgtgtggtct attttggagt ccagggcatg      1020
     tgctaaacgc cacataagtt tggaggcgct gaagcaatca ttgctccaag aatgggatcg      1080
     attatcggaa gaagacctgc ggcccattgc gctaaatttc cagaaacgtt tagggctctg      1140
     catcgcagcc caatgaagcc acttcgaaac cggctgaata tatgttaaca caatacctat      1200
     ttaatagttg tgtatctgca ttttttctca aatacagttc cttaaaaagt tatgatcaaa      1260
     aatgtttgtc cgggttattt attgtcaccc tg                                    1292
//
ID   Mariner-5_DRh repbase;    DNA;    INV; 1636 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1636
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1399-1399 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. TA TSDs. 29-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1636 BP; 558 A; 286 C; 297 G; 488 T; 7 other;
     cactagtcgg cataattatt ttgacgaaac ctctttttga ctattgaact tagcgttact        60
     taaaatcgtc aaataacggt tcaaaaagta agtgcaaagc aaagaatata tttttagcta       120
     tgtgcattcc caattttgtt tcgtttaccc tttgcattct ctttttgctg ataagaatgc       180
     atgcagacaa cggctttttg aatggcataa gtattttgac agcatcttta tggatatatt       240
     ttcacatttt tgagcacgcg agaatcaaac agcttttgtg cttagccttt atcaaaatta       300
     tatgttgtta ttaaaataca aaagtattaa ataatattaa ataacatggg taaaacggct       360
     gagttaagtt tggttaccag atcttcaatg gtagcgaagt ttaaggctgg aattgcagtc       420
     aaagacattg ccaaggagtt tgatgtgtcg cgtcagacag tgcactacca aattaagaag       480
     tttgaaaagc ataacgactt gcgtaattta agaagatcag gtgccaagcg caaaacaaaa       540
     cccagtgaag accgagtcct tatacgggaa tttaaaaaaa atgtttttct gaagcctcag       600
     tctgctgccg atcaatttaa tttaacagcg aagaccccaa ttagtgagcg cacagtccgt       660
     cggcgactaa aagaaagtga ttttaagacc tacaaagcca aggacgtgcc atacatatca       720
     aaagcaaaca agcttaaaag actgtccttt gcaaaagaat atatcaataa gccaaaggaa       780
     ttctggagaa gcgttttatg gacagatgaa agctcctttg aatataattc atcaaaaaat       840
     acattttatg taagattacc aaaggtacaa aggcaaaaaa ggcggcccgt ttgccaaaaa       900
     gtaagccacg gtggaggctc tgtaatgttc tggggatgtg tggcctataa cggactgggt       960
     gacttcgttc ctgtcactgg ctcaatgaac caacacaaat atttgtcggt tctaaacgaa      1020
     aacgccttta cttctggaga ccggcttatt gggcaactat atcctgcaac aggataacgc      1080
     cccatgtcac aaagccaaga tgataacaac atttttgaag gatgttggcg ttacaacctt      1140
     ggattggcca cctcaaagtc cagacttaaa tattattgaa aacgtctggt ctcttattaa      1200
     acgcaaaaga acagtatcgt taaacaaaac cagagaggag gcaatttctg agatcacttc      1260
     cctttgggaa gagatatctc cagagattct ccaaagtttg atcgattctg ttccacgacg      1320
     cctgcaaaaa gttatagaaa ctaaaggaaa ttatatattt tactaaattc atttgtttcc      1380
     tttacttttt ttgagcttag gctatcttat taatattaaa atgtacttgt caaaatactt      1440
     atgccacaac atgaaattca ctttagctta tawatttcta agttcatatg aaaaaatgtt      1500
     gatttcatta tttttaagtt tgtattagca ctaagtaaaa caggaaaaaa aattattgag      1560
     ttgtatcaaa ccgttawaaa gttamatama aawwtgcacc atwtgttttt cgtcaaaata      1620
     attatgccga ctagtg                                                      1636
//
ID   Mariner-5_DSuz repbase;    DNA;    INV; 1613 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1613
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 92-92 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus.
XX
SQ   Sequence 1613 BP; 556 A; 281 C; 320 G; 452 T; 4 other;
     cactggtgga aaaaataata gaaacgattt tcacttctgc acttcttatt aaatagctaa        60
     gtaagtacga aagttctggg cttcaaacca ataacatgtg gagcactgat aactgttctt       120
     tattttgtgt tacaccttga gccccattcg ccgttattat gtgctgtgtg cataattttt       180
     gagggcgagc acatgtttgg cctggaaaaa aaaatagaaa cactacttat ttcaaccgaa       240
     atttcggctt agactctttg tatttcgaac tttttggttt agtttaagta ctttaaggta       300
     agtttaacaa aaagtttcga acatggtgaa aatccgttta taattacgac ttctaggctc       360
     agaatgggtc gaggagtgca ctgcacggct ccggaaaggc atataataaa aaaactgagt       420
     gatgaaggca aatcaatgac tgaaatagct gaactaatga attgctcaaa gaaaaaagtg       480
     ttctccgctg ttcattacat cgataaaaag gagaaccgag gtagaaagcg agccacaacc       540
     aaaaggtttg acgacatttt ggctcgaaca gtaaaaaagg acccattcct tacagccaag       600
     gaactcaaaa ataccttagg ggcagcagtt acagctcgga caattagaaa caggctgatt       660
     gaacgagatc tgagagcata ttcagccagg aaggttccat ctctgagcca aaaaaatatg       720
     aaaaatagac tgatttttgc aaaacgacac cagaaccgcc aaaactggaa caatgttctc       780
     tggtccgatg aaactaaaat waatatgtgt ggatcagatg ggaaaatata tgtgagacgc       840
     ccaaagaaca ctgctttcga tcctaagcat acgattaaga ctgttaagca tggtggaggg       900
     aacataatgc tatggggatg cttttcatct tctggagttg gtcctatatt ttggattaag       960
     gaaaggatgt ttgctgagga ctaccgtagg atacttgaga gcacaatgct tccatatgcc      1020
     gatgaggaaa tgccgcttaa atgggagttc atgcaagaca atgacccaaa gcataaagca      1080
     aaaattttac aaaaatggtt ccaggaccaa aaaatatctg taatggactg gccagctcaa      1140
     tcgccggatc taaatccgat tgagcattta tggggacacc ttaaaagacg aattggaaac      1200
     ttcaaagcgc caaataagga agcattgtgg cagaaagttc aaagcgagtg gtacgccatt      1260
     tctccttcaa cttgtgccaa tcttgtacac tctatgcctc gccgatgcct tgcagtattg      1320
     caatgtaaag ggaatactac taaatattag atgaggagcc attatggctt aaaaaaatga      1380
     tgtttttgaa gtttcaacgt tttgtttcta ttattttttc caaggtaaaa acccaaaaat      1440
     taattcttta agtccacacg tgatttataa aaatcttttt gttccttatt ataaaacata      1500
     cataagtatt tgttaaaaaa aaatatatat gagatatatc tactttgttt tttatgaaat      1560
     aaaaaaaaaa tackaaagcg akwaagccgt ttctattatt ttttccacca gtg             1613
//
ID   Mariner-5_DTa repbase;    DNA;    INV; 1619 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1619
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6220-6220 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(365..1357,1361..1534)
FT                 /product="Mariner-5_DTa_1p"
FT                 /translation="MPRGTELSNEEQIKIKTMADCGVKVGVIATTINRHRN
FT                 TISNFLKSPQKYAQNNRKGAVPKVDERTKRHVRALATEKMMSCAQIKAELK
FT                 LPITRQRVQQICRKDLHLRYEAKVPKPKLLRRHKMARLAFYEKYKFWVNEF
FT                 HNVVFSDEKKFNLDGPDGNQKYWRDPRHPRLTCHRRNHGGGSLMVWAAFSF
FT                 FGKSPICFVPGRMNAEIYTDLLESELIPFSEEFHSEDFVFQQDNAPIHVAR
FT                 YTKTFLESKKIPLMQWPAISPDLNPIEDLWGILSAKVFGGGRQFETLKDLK
FT                 XTIVKEWANIDTPVLQNLVNSMPRRLQLVEQQKGDTISYKKYFRYNMNVFN
FT                 TFFLFNSILHKYQFSMNNSFKLFSKNGTICYXIXFKLIHFVHLLPX"
XX
SQ   Sequence 1619 BP; 553 A; 277 C; 308 G; 473 T; 8 other;
     cctcagtaaa attgatatat gtgcaatttt ttttttttat attaccgtct atttaatagc        60
     gacagttatg ttttgagtat acacaatttt tctcttatat atactaatgt ttcgtgaggc       120
     attgatttct tatcagctcc caatctttag caccgttaaa ataaagaaga acgcaaagtg       180
     atgcgtttca tagaaaattg ataaatgtgc aaagttcttc atttacgttt agagtgtgat       240
     ctggtaataa tgtattggaa caatttgact aaatttgtgt gatcacttat aagcgccgaa       300
     ctaaaaatta aatcgcgtta ttttataaag cgttaagtta agtaaacgga tcaatttaat       360
     aaaaatgcca cgtggaaccg aattaagtaa cgaagagcag attaaaatca aaacgatggc       420
     ggattgcggc gttaaagtgg gtgttattgc tacaacaata aacagacatc gcaatactat       480
     atcaaatttc ctaaagtctc cgcaaaaata tgctcagaac aaccgaaaag gtgcagttcc       540
     taaggttgat gagcggacta agcgccacgt tcgagccttg gcaaccgaaa aaatgatgag       600
     ttgcgcccaa ataaaagcag aattgaagtt gccaataact aggcaaagag tgcaacaaat       660
     ttgccgaaag gatttacatc tacgatacga agctaaggtg ccaaaaccta agctattacg       720
     gcgccataaa atggcccgac ttgcttttta cgaaaaatat aaattttggg tcaatgaatt       780
     ccataatgtc gtctttagtg atgagaaaaa attcaattta gacggcccag atggaaacca       840
     aaagtattgg cgagacccca gacatccccg gctgacttgc cacagacgca accatggggg       900
     tgggtctctt atggtttggg cggcatttag tttctttggg aaatcgccaa tatgctttgt       960
     accagggcgc atgaatgcgg aaatatatac ggatctcttg gaaagtgagc ttataccatt      1020
     ttcagaagag ttccacagcg aggattttgt gtttcaacag gataacgctc ctatacatgt      1080
     tgcacggtat acgaagacgt ttctggaatc caaaaaaatc cccttgatgc agtggcctgc      1140
     tataagtcca gatctaaatc cgattgagga tctttggggt atcctatcag ctaaagtttt      1200
     cggaggtgga aggcagttcg agaccttaaa ggacctaaag gakacaattg ttaaagaatg      1260
     ggcaaacatt gatacccctg tcctgcagaa cttggttaat tcaatgccta gacggttgca      1320
     gttagtggag caacaaaagg gagacactat atcatactaa aaaaaatact tcagatataa      1380
     tatgaatgta tttaatacat tttttctttt caactcaatt ttgcacaaat atcaattttc      1440
     tatgaacaat agttttaagt tattttctaa aaatggaaca atttgttatw aaatatwttt      1500
     taagctcatt cactttgtac atttactacc tamataamag aaataamtat amaaatktaa      1560
     catgcaggag ttaaaaaaaa caacaaaatc tcgatgcaca tatatcaatt ttactgagg       1619
//
ID   Mariner-5_DY repbase;    DNA;    INV; 1649 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.09, Created)
DT   09-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Drosophila yakuba.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1649
RA   Jurka J.;
RT   "DNA transposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1745-1745 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1381
FT                 /product="Mariner-5_DY_1p"
FT                 /translation="MPRGTHLSVEERGLIMGLSESGAKISEIASRVSRHPN
FT                 TVANFLKNVESYGKAERSGRPSTIDERCKREIKRLAVNKQMSCNDIKRHLK
FT                 LKVSRRRVHQLLAENKTVKYSSRVPVPMLLPRHISTRLSFAEKYKFWSEEF
FT                 RSVIFSDEKKWNLDGPDGCHKYWRDLRHPRETRHKRNFGGGSLMVWAAFGY
FT                 AGKSRVCFIPTKTNSEIYTQLLEEELIDFATELYADNWTFQQDNAPIHTSR
FT                 ATKTFFSSKSIPLLEWPAISPDLNPIEDLWGILSARIYKNGRQFDNIRQLK
FT                 DVLVAEWELISNETLQNLADSMPNRIHKLLMAKGKHINY"
XX
SQ   Sequence 1649 BP; 550 A; 291 C; 313 G; 494 T; 1 other;
     tacctcaggg aaataagtat atgtgtatga ttatttttac tgtttatgag cctatatctt        60
     ctataatcgt agcttttant ctattattgg tatgcaatac tctactcttg ccttctgttc       120
     ttacaatgca aatgcaaaat tcttctttgc tcacaattcg tagcaccgtt atagaaaaat       180
     tgtgtgccgc gatttttttt tcttaggaaa taagtatatg tgaacacaaa agcttgtgcg       240
     catttgtcaa tcagcgtgtt atttggatcg agtaaattgg tgttaattga ctgtattcta       300
     aagaaaataa attaattaca caaaaataat atgtaagtaa tcaattaatc gcatgtaaca       360
     ctataaaaaa tgcagttttt ttctaagaat gcctcgtgga acacacttgt ctgtcgaaga       420
     gcgcggtctg attatgggtt tgagcgaaag tggcgccaaa atttctgaaa tagcttccag       480
     agtttcgaga catccaaata cggttgcaaa tttcttaaaa aacgtggaat cttatggaaa       540
     agccgaacgc agtggcagac ccagtaccat cgacgagagg tgcaagcgcg agattaagcg       600
     tctagctgtt aacaagcaaa tgtcttgtaa cgacattaag cgccatttga agctcaaagt       660
     gtctaggaga cgggttcatc agcttttggc agaaaataag acagttaaat atagctctcg       720
     ggtgcctgta ccaatgctac taccacgtca cataagcaca cgtttgtcat ttgccgaaaa       780
     atacaaattt tggtccgaag aattccgcag tgttatattt tcggatgaga aaaagtggaa       840
     tttggatggc ccagatgggt gtcataagta ttggcgtgat ttacgacatc cccgagagac       900
     acgacacaaa aggaactttg gcggcggatc actgatggtt tgggctgctt ttggatatgc       960
     aggaaagtct cgcgtttgtt ttattccaac caaaacaaac tccgagatat atacccagtt      1020
     gctggaagaa gaattaatag actttgcaac ggagctttac gccgataact ggacttttca      1080
     gcaggacaac gctccaatcc atacatcacg tgctacaaaa acattttttt cttcaaaatc      1140
     tataccactt ctggagtggc cagcgattag tccggactta aaccctattg aggacctctg      1200
     gggaattctt tcagcaagaa tttataagaa tggacggcag tttgacaata tcagacaatt      1260
     aaaagacgtt ttggttgcag agtgggagct aataagcaat gaaactctcc aaaatttagc      1320
     agactctatg ccaaatcgca ttcataagct tcttatggct aagggaaagc atataaatta      1380
     ctaaaataaa aaacaataat tgaatacaga aacaattaat aagattaaga gaaccaaatg      1440
     aaaaatacac atatacttat ttcctaaaga cttgttaaat tcaataaaat atatttataa      1500
     gtttccatta aactatgtct tattattata tattctgtta gcggttcaaa aggcctataa      1560
     attaaaaaaa agcttgaccg gattcacttt gttgaaagta tacttttttg gaaaaaaatg      1620
     catccacata tacttatttc cctgaggta                                        1649
//
ID   Mariner-5_FoCa repbase;    DNA;    INV; 1657 BP.
XX
AC   .
XX
DT   30-OCT-2019 (Rel. 24.12, Created)
DT   30-OCT-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1657
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2473-2473 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. TA TSDs. 223-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           338..1375
FT                 /product="Mariner-5_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MPRSRKETSFDIRNLVIKYHEGDDNGQKTQQEIAALL
FT                 KIPRTTVQYIIKKYKSSGLIINKQGRGRKPIFSVKEKRAIVRKVAANPKLT
FT                 ISKIKVQVENETGKTANRKTIANVLKSRGFKSCRARKKPLISKANLKKRLA
FT                 FAKEHVNKNQNFWDSILWSDESKYNIFGSDGRARVWRKSGEALQMRNLNPT
FT                 VKHGGGSVMIWGCFSSAGTGNHEFVDGIMNQHMYQGILDRNVKQSATKLCL
FT                 GRRYIFQQDRDPKHTAKTTWEFFKKNKIKVLEWPPQSPDLNPIEHLWDHIE
FT                 RTIRKSEISSKQSLKTAISDAFQTVTPEVTRKLVESMGRRCQAVISARGGP
FT                 TRY"
XX
SQ   Sequence 1657 BP; 557 A; 303 C; 338 G; 459 T; 0 other;
     cactgatgcg atctattgtt cgtcaaaggg aacgccattt ggtaaatcga ggttctacga        60
     aaaacaacaa gttatattct tatgattatt ttggcaatta gtagacaaat taactcggaa       120
     tatcgtgacc taaattcatt ttccacaaaa aattgtgtat ggggtaaata aagatttttc       180
     cgaggtaact taaaatcaac ctggaaacaa ttgttcgtca ttttggtgct ttccttgaaa       240
     acaacctcgt ttttgctggt gcgtattttt tatatttttt taatatttaa aattattact       300
     ttccttcatt tagcatgaat tctgatgtaa atagatcatg ccgaggagta ggaaagagac       360
     gtcttttgat attcggaacc tggtcattaa atatcacgag ggagacgata atggccagaa       420
     aactcagcag gaaatagcag cattgctaaa aattcctcgc acgacggttc agtatataat       480
     taaaaaatat aaatcatctg gattaattat aaacaagcaa ggtagaggtc gaaagccaat       540
     attttccgtg aaggagaagc gcgccattgt caggaaagtg gccgccaacc ccaaactgac       600
     gatttcgaaa atcaaagttc aggttgaaaa tgaaacagga aagacagcca atcggaagac       660
     catagcgaac gtgctgaaat ctagaggatt caagagttgc agagctagga agaagcctct       720
     catatccaaa gcaaacctta agaaacgact tgcgtttgct aaagagcatg tcaacaaaaa       780
     tcaaaatttt tgggattcaa ttctatggtc cgacgagagt aagtacaaca tttttgggtc       840
     agacgggcgt gccagggtgt ggaggaagtc tggggaagct cttcaaatga gaaatttgaa       900
     ccccacagtc aaacacggag gtggaagcgt aatgatttgg gggtgcttca gctctgccgg       960
     aaccggaaat cacgaatttg ttgatggaat tatgaatcag cacatgtacc aaggtatcct      1020
     agaccgaaat gttaaacaat ctgcgacgaa actttgtcta ggtcgccggt atatcttcca      1080
     acaagaccgt gatcccaaac ataccgccaa aacaacttgg gaattcttta aaaaaaacaa      1140
     aataaaagtc ctagaatggc ctcctcaaag cccggatctt aatcccatcg aacatttgtg      1200
     ggaccacatt gagagaacga ttcgaaaaag tgaaatttct agcaagcaga gcctgaaaac      1260
     cgcaatttct gacgcatttc aaaccgtgac cccggaagtg acccgcaaac ttgtggaatc      1320
     gatggggcga cgctgtcagg cggttatatc tgctcgggga ggaccaactc gttattaaat      1380
     atcacttgtt gtattaaatt gttatgattt atataaaaat ttgaaattta atacaaatga      1440
     cgaacaattg tttccaggtt gattttaagt tacctcggaa aaatctttat ttaccccata      1500
     cataattttt tgtggaaaat gaatttaggt cacgatattc cgagttaatt tatctactaa      1560
     ttgccaaaat aataataaga atataacttg ttgtttttcg tagaacctcg atttaccaaa      1620
     tggcgttccc tttgacgaac aatagatcgc atcagtg                               1657
//
ID   Mariner-5_HMM repbase;    DNA;    INV; 1265 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1265
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2643-2643 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TA TSD. 21bp TIR. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(304..741,828..1199)
FT                 /product="Mariner-5_HMM_1p"
FT                 /note="HTH and DDE transposase."
FT                 /translation="MWFHKFKNGDFDIEDKDRSGRPKIYEDAELKELLEED
FT                 SSQTQKELALTLKVTQQAVSHRLKSLGMIHKQGNWVPYELKPRDIERRLCL
FT                 SEILLARHKKKGFLHRIVTGDEKWIHYDNPKRRKSWGLPGHASTSTAKPNV
FT                 HGKNSCYLMRLNRALKDKRPQYYSRHEKIILLHDNARPHVAAPVKKYLETL
FT                 DWEVLFHPPYSPDIAPSDYHLFRSMAHALAEQRFTSYEDTKNWVDSWIASK
FT                 DKEFFKRGIRMLPERWEKVVASDGQYFE*"
XX
SQ   Sequence 1265 BP; 419 A; 216 C; 276 G; 354 T; 0 other;
     caaataagtt tccgccgttt tgttgtagat ggcgcggcac aaagtgtccg ttagtttccg        60
     cagatataac ctaatattag ttactttggt cattcaagaa caaaataact tactaatata       120
     attgacttca tattggtaaa atataatttt ttggtagttg aaaatgccaa atttggccag       180
     gtaagcgtca tttgcgggaa atattagttt acttctttaa tttaaagaaa tctgctgctg       240
     aagcgcatcg attgctcgta gaagcatatg gtgagcatgc tttgagtgag agaacgtgtc       300
     gtgatgtggt ttcataagtt taaaaacggc gatttcgaca tagaagacaa agatcgcagt       360
     ggaaggccaa aaatttacga ggatgcagaa ttgaaggaat tgttggagga agattcatct       420
     caaacacaaa aagaacttgc tcttacatta aaagtcactc agcaagcagt atcacatcgt       480
     ttaaaatcat taggaatgat tcataaacaa ggaaattggg ttccgtacga attaaagccg       540
     agagatattg aacgcagatt atgcttaagt gaaatattgc tagctagaca taagaaaaag       600
     ggatttttac atcgtatcgt aactggtgat gagaaatgga tacattatga taatccaaaa       660
     agaagaaaat cgtggggatt acctggccac gcgtcaacat cgacagcaaa accgaatgtt       720
     cacggaaaaa actcatgcta tgtatttggt gggatcagct gggtgtagtg tattatgagt       780
     tgcttaatcc gagcgaaaca ataaacggaa ccctctatcg aacacagttg atgagattga       840
     accgagctct gaaggataaa cgccctcaat actattctag acacgaaaaa attattctcc       900
     tgcatgataa tgctcgtcca catgttgcgg ctcccgtgaa aaagtatttg gaaacacttg       960
     attgggaagt gttattccac ccgccgtatt caccagacat tgcaccgtcg gattatcacc      1020
     tgttccggtc catggcgcat gctctggcgg agcagcggtt cacatcttat gaagatacca      1080
     aaaattgggt tgattcgtgg atagcctcaa aagacaagga gttcttcaaa cgtgggatcc      1140
     gaatgttgcc tgagagatgg gaaaaagtag ttgcaagtga tggacaatat tttgaataaa      1200
     cttacattac cgttcttcta taataaatat ttaatttttg ataaaaaacg gcggaaactt      1260
     atttg                                                                  1265
//
ID   Mariner-5_HSal repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-5_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1296
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 845-845 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-5_HSal_1p"
FT                 /translation="MENLKQRAVIEFFVKKGLKAMEIHSEMVNVLGESAPS
FT                 KTMVCKWALEFQRGRTSIEDDPRSGRPKSASTPEIIEQIHVIVSEDPSVTT
FT                 REIAHTIGISDERVRHILHKELQMKKVFGKVVPHTLTIQQKLARKQISQRH
FT                 LDRFKKNKTDFVRRFITMDETWIYHHDPKLKQERLQWTEAGCSAPKQTKHE
FT                 RSAKKVLASVFWDAKGILLIDYLEKGKTINSEYYCNLLDQLDAKIREKRPG
FT                 LQHKQIIFHQDNAPAHXSVLSMSKFNELKYKLLDHPPYSPDLAPSDFYLFR
FT                 NLKQFLRGKHFLSNEEAIAAVEAYFADLPETHFRDGIKLLESHWAKCIEVN
FT                 GDYIEE"
XX
SQ   Sequence 1296 BP; 419 A; 226 C; 269 G; 380 T; 2 other;
     tacaggttgc gtgaaaagtt cgcggagcgg catctataag taaacggtag aattataaat        60
     tgtagtcggt tatatagaat cactcttcac atgaacctag gttaggtttc atttccatct       120
     gtcaattctt tctgtgttta caagccaatt gaagttgacg tgtcagtata tttgtttgca       180
     atggaaaatt tgaaacagcg tgcagtgatt gagttctttg ttaaaaaagg tttaaaggca       240
     atggaaattc attccgagat ggtaaatgtg ttaggggaat ctgctccttc aaaaacaatg       300
     gtttgtaaat gggcacttga gtttcaacgt ggtcgtacaa gcattgaaga tgatccacgc       360
     agtggacgtc caaaaagcgc atcaacacca gaaatcattg agcaaataca tgttattgtt       420
     tctgaagatc caagtgtgac tacgcgtgaa attgctcata ccataggcat ttcagatgaa       480
     cgggtacggc atattttgca taaagaatta caaatgaaaa aggtgtttgg aaaagtggtg       540
     ccgcatacgt taacaattca acaaaaactc gctcgaaagc aaatttctca gcgtcatttg       600
     gatcgtttta agaagaataa aaccgatttt gtgcgtcgtt ttataactat ggatgagact       660
     tggatctatc accatgatcc taaattgaaa caggaacgtt tacagtggac tgaagctgga       720
     tgttcagctc caaagcaaac aaagcatgaa agatcggcaa aaaaggtttt ggcatcagtt       780
     ttttgggatg ctaaagggat tttgttaatt gactatctgg aaaaaggtaa aacaattaac       840
     tctgaatatt attgtaacct tttggatcaa ttggacgcaa aaattcgtga gaaaagacct       900
     ggtttgcagc acaaacaaat catttttcac caagacaacg cacctgctca canaagtgtt       960
     ttgtcaatgt ctaaattcaa tgaattgaag tacaaattgc ttgatcatcc accgtattcg      1020
     ccagatttgg cacccagcga cttctatctg ttccgaaacc tgaaacaatt cctccgtgga      1080
     aagcattttt tgtcgaatga agaagctata gcagccgtag aggcatattt cgcagacctt      1140
     ccagaaacac acttccgcga tggaataaaa ttattggaga gccattgggc caagtgtatt      1200
     gaagttaatg gagactatat tgaagaataa aatcattttt agaattnggt attctttatt      1260
     tcagtttcgc tccgcgaact tttcacgcaa cctgta                                1296
//
ID   Mariner-5_LHu repbase;    DNA;    INV; 3590 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   10-MAR-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3590
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 363-363 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. ~650bp TIR. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(852..2009,1963..2448)
FT                 /product="Mariner-5_LHu_1p"
FT                 /translation="MVQLNPFNVIMLVYVTFSALNLSTSPITSEEREMAHK
FT                 IESMLKEMRDERYEMEVEESLDYENDNDIPTAEQFELGDEEEEGELLDANP
FT                 KVICTTDERIPYEYKKNAVEFWKSSTTRPRTLEGVKRRFRKVYSLRQLRRW
FT                 EIQVNQGGSRFEKLKQISEYTLNNFHTALENRIIVHDADLARWAIRAQENL
FT                 NVPGFTASSRWIRKFKIIHNIVSRKITKFIRKTSIMSNVDFEEKCNTFIEN
FT                 VKYQIIEYGVENIYNSDQSGFQLELHAGRTLAYKGTKKIESAVQSVSATTH
FT                 SYTIQPTVSADGRLLSPLFIVLKEVSGTFGPRVQETMFKAPNIFVTASKSG
FT                 KLTAHHFKIWLQDVLFPNVGPKSVLLLDSWTKLWSLSKYYSRIIRGLNFGH
FT                 CPNIIQESKPESTEDIILLTIPAGTTGKIQPLDVYGFRLWKNFIRHFSDTV
FT                 MLLGLEVNLHARNTILKLQSLTHNQFSSPRFRNLLKYAWYKSGYVINKPEE
FT                 FETPVEFCFHKQSKPTCDICGAPAIITCAWCKKSLCINHFFHEHHLCDTFV
FT                 P"
XX
SQ   Sequence 3590 BP; 1269 A; 555 C; 611 G; 1155 T; 0 other;
     caaggaaagg gacccaagtg tccccctccg attttgacga gctttaaata tgttgtaaag        60
     tagctcaaaa taagagacac gtattttttt tatgtgcttt ctcgcacgtt tagggttgaa       120
     acaaccccta caagctaaaa cggttttttt ggttttgact gaatatcgtc aaaactgtaa       180
     gagatatcaa aaaatgtttc gaataaaagt tgcatggtct tttatgagct ttataaccgc       240
     gtagctcgat ttttaaaaaa ttttatattt tttaatttac cctcacccct tcttattatt       300
     tttacgaatt tcaaaatttt tgttatgaca aaagttgtag cattttttac gctgaataca       360
     accatatatg attttattat gtttcgaaat cgcatctttc agaaatgagc tgtcaatgtc       420
     gcactatatg cgtcgcgctg cgatatatgc atatatatgc ataacgcatc gtttgtgccg       480
     cttgtgtaat cgatgtttgt cgcgcatgtg taatcgataa gacgaataaa attagaaata       540
     aagattagca tgttatgaaa tattcggaaa aatgttctga tcaaagaaca aagttcacta       600
     aagttgttgc caaggcatcc cctctatttt acacttttat agtcgcattt cgagcgcatt       660
     tatagcgcag cgcgttgtca tatcccgtca gtgcatatta cgctttaaag ttgtgcgctt       720
     gttagtgatt acggaaaaac aatatataaa acagcatcaa aaaaagaaca gcaaattcac       780
     tataaagtaa gtattatttt tttgtacaca aataaggaga aatatttaat tgttaccata       840
     tatttttcag aatggttcaa ttaaatccat ttaacgtaat aatgttagta tacgtaactt       900
     tttcggccct taatctatca acaagtccga taacatctga agaacgagaa atggcacata       960
     aaatagaatc tatgctgaaa gaaatgcgcg atgagagata cgaaatggaa gtagaagaat      1020
     ctttagatta tgaaaacgat aacgatattc caacagcaga gcaattcgaa ctaggagatg      1080
     aagaggaaga aggtgagcta ttggacgcaa atcctaaagt tatatgtact acagatgaac      1140
     gtattccgta tgaatataaa aaaaatgcag tcgaattttg gaaaagcagt acaacaaggc      1200
     caagaacatt agaaggagta aaacgaagat ttcggaaagt atattcatta cgtcaattac      1260
     gacgatggga aattcaagtg aatcaaggtg gcagtagatt cgaaaaatta aaacaaattt      1320
     cggaatatac attaaataat tttcatacag ctcttgaaaa tagaattatt gttcacgacg      1380
     ctgatttagc tcgatgggct attcgggcac aggaaaattt aaatgtacca ggatttacag      1440
     cttcatcgcg atggatacga aaatttaaaa taatacataa tattgtatct cgtaaaataa      1500
     caaaatttat aagaaaaaca tctataatgt ctaacgtcga ttttgaagaa aaatgtaaca      1560
     catttattga aaacgttaaa tatcaaataa tagaatatgg agttgaaaat atttacaaca      1620
     gtgatcaaag cggattccaa ttagaacttc atgccggtcg tacattggca tataaaggaa      1680
     caaaaaagat tgaatctgca gtacaatccg tatcggcaac tacgcatagc tatactatac      1740
     aacctactgt ttcagccgat ggtagattat tatcgcctct ttttattgta ctgaaagaag      1800
     ttagtggaac atttggtccc agagtgcaag aaacaatgtt taaggcacct aatatttttg      1860
     ttacggcttc gaaatccgga aaattaacag cgcatcattt taaaatttgg ttgcaagacg      1920
     tactttttcc aaatgtaggt ccaaaatctg ttttactact agattcgtgg actaaacttt      1980
     ggtcattgtc caaatattat tcaagaatct aaaccagaat ctacagaaga tattattttg      2040
     ttgactatac cagctggaac aacaggaaaa atacaaccat tggatgtata tggttttcgt      2100
     ttgtggaaga atttcattag acacttttct gatactgtaa tgcttttagg tctggaagtc      2160
     aatctgcatg caagaaacac cattttaaaa ttacagtcat tgactcataa tcaattttca      2220
     tcgccaagat tcagaaattt attgaaatac gcatggtata aaagcgggta cgtaataaat      2280
     aagcccgaag aattcgaaac accagtggaa ttttgtttcc ataaacagtc aaaaccaaca      2340
     tgcgatattt gtggcgcacc tgcaataatt acttgcgcat ggtgcaaaaa gtcgctttgt      2400
     ataaatcact tttttcacga acatcacctt tgtgatacgt ttgttccata aattcatctg      2460
     tttttaatat atgttaatat atgtattata ttcaatatat gtagtatgtt attgttgaag      2520
     gtaaagttgt aattgtttcg acatatatta ttataaaaga aataaaataa taaacaaaca      2580
     aatgtttcta gtattgatta atagaaaaac ctgaaattaa ttggaatttt ttgcattacc      2640
     attgaaaaac aataaattgc attttaattg taagattttt atttatttat ttctctttcg      2700
     atataatcca ctcttaaaaa aggcatgaaa gatcgatact cgaatgtatc gaaagtattg      2760
     ttgacgctta tccgcgacgc tgattggtta tctcgattat tctgacagtt tgatagtttg      2820
     agagcgaaga ttattttgac ggttatttaa aattttaaaa attttattaa aatatttaga      2880
     ttttataatt attaaattat tataataagt gcacgggcgc agcgcgcgct tgtattgttc      2940
     tagtataact ataaaagtgt aatatagagg agatgccttg gcaacaactt tagtgaactt      3000
     tgttctttga tcagaacatt tttccgaata cttcataaca tgctaatctt tatttctaat      3060
     tttattcgtc ttatcgatta cacatgcgcg acaaacatcg attacgcaag cggcacaaac      3120
     gatgcgttat gcatatatat gcgtatatcg cagcgcgacg catatagtgc gacattgaca      3180
     gctcatttct gaaagatgcg atttcgaaac ataataaaat catatatggt tgtattcagc      3240
     gtaaaaaatg ctacaacttt tgtcataaca aaaattttga aattcgtaaa aataataaga      3300
     aggggtgagg gtaaattaaa aaatataaaa ttttttaaaa atcgagctac gcggttataa      3360
     agctcataaa agaccatgca acttttattc gaaacatttt ttgatatctc ttacagtttt      3420
     gacgatattc agtcaaaacc aaaaaaaccg ttttagcttg taggggttgt ttcaacccta      3480
     aacgtgcgag aaagcacata aaaaaaatac gtgtctctta ttttgagcta ctttacaaca      3540
     tatttaaagc tcgtcaaaat cggaggggga cacttgggtc cctttccttg                 3590
//
ID   Mariner-5_LMi repbase;    DNA;    INV; 1335 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1335
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3007-3007 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           166..1233
FT                 /product="Mariner-5_LMi_1p"
FT                 /translation="MPPIIVSPADCEVRAVIRFLSAKGLKAIDIHREICAV
FT                 YGENIMSDGMVRKWVRAFKDGRTNVHDEQRSGRPSVVNESLVQEVDNKVRE
FT                 NRRFTISSLRDDFPNVSRSVLYGIVTEHLNYRKLCARWVPKMLTDVHKTKR
FT                 LGSALTFLERYHNDGDDFLSQIVTGDETWVAYVTPESKQQSMEWRHSDSPR
FT                 KVKFKQTISARKIMCTVFWDRKGVLLVEFLPRNETINAAAYCKTLHNLRRS
FT                 IQNKRRGKLSKGIVLLQDNARPHVANQTTDLITSFRWETLDHPPYSPDLAP
FT                 SDYHLFLHLKKHLGGQRLQDDDEVKTVVMQWLTSQAADFYEEGIQKLVQRY
FT                 DKCLNIDGNYVEK"
XX
SQ   Sequence 1335 BP; 378 A; 274 C; 327 G; 356 T; 0 other;
     cgagagcgtg ttttttttaa gtaagtaccg ttttgccaca ccgcggccgc agcgctgcgg        60
     tcggcgttct gcgcatgcgc actgggtacc tacatctgtt gtctacgcac tgacgccatt       120
     acagtctgat tcttccttgt ttacgttgtg tactgagtgt ttaagatgcc tccgataatc       180
     gtgagtcccg ccgactgtga agtacgggct gttataagat ttcttagtgc taaaggccta       240
     aaagcgatcg atattcatcg tgagatctgt gcagtttacg gagaaaacat tatgagtgat       300
     ggaatggtaa gaaagtgggt gagagcattt aaagatggcc gcacaaatgt gcatgatgaa       360
     caacggagtg ggcgtccttc ggtcgttaat gaaagtttgg tgcaggaagt ggacaataag       420
     gtgagagaaa acagacgctt tacgatttcc tccttgcggg atgactttcc taatgtttct       480
     cgtagtgttt tgtatggcat tgtgaccgag cacttgaatt accgaaaatt gtgcgcacgt       540
     tgggtaccga aaatgttgac ggatgtgcac aaaaccaaac gtttaggcag tgcattgact       600
     ttccttgagc ggtaccacaa cgacggtgat gatttcttaa gccaaattgt tacgggcgat       660
     gaaacatggg tggcctacgt cacaccagaa tcaaagcaac agtccatgga atggcggcat       720
     tcagattcac ccagaaaagt gaagtttaag caaacaattt ctgcccggaa aatcatgtgc       780
     acagtttttt gggacagaaa aggagtattg cttgtggaat ttctgcctcg taatgagaca       840
     atcaatgcag cagcttactg taagacattg cacaatctgc gccgttcaat tcagaacaaa       900
     agacgtggca agttgagcaa gggcatcgtt ttgctgcaag acaatgcccg tccgcatgtg       960
     gctaatcaga ccacagatct catcacatct tttcgatggg aaactctaga tcatcctccg      1020
     tacagccctg atctggcgcc cagtgactac catctgttcc tgcacttgaa gaaacacctg      1080
     ggcggtcagc gtcttcaaga cgatgacgaa gtcaaaacag ttgtgatgca gtggttaaca      1140
     agtcaggcgg cagacttcta tgaggagggt attcaaaaac tggtacaacg ttatgacaag      1200
     tgcctcaata ttgacggaaa ttatgtagaa aagtagatta aggtacaggc tttcatgtaa      1260
     aaataaaatt attgagatat cttagcacgt ctttttttaa tttcaaaacg gtacttactt      1320
     aaaaaacacg cctcg                                                       1335
//
ID   Mariner-5_MMo repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6267-6267 (2021).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(144..872,876..1202)
FT                 /product="Mariner-5_MMo_1p"
FT                 /translation="MDFKTKIIESISTEEQRTIVKFFVLQDHSARLIHSNL
FT                 SKLFGKKAVSLSTVTRWAAQFRAGEVFTERGHGGDRSDHDSRMDRRAKIVE
FT                 CFDESRHWSVSSLAVKTGIPKSTVHRIIKEKLGIKKVLGKWVPYFLTENQK
FT                 NHRVLASQSNLATYNKDKTTLKRTISIDETWVALYMEPDRNQMKQYLFPGE
FT                 TAEEVPRQNIHARKRMLIMALDFNGIAFYKLCPEKTTVNGDLYKSFLCEYL
FT                 QKLSNRDPKHLRLHHDNARPHTAACVKEXLXQKQIKLWNHPPYSPDISPLD
FT                 YGRFGELKRALKGTNFSTWDEFETRLQQVVDEFNSTGRITAIPRLPERWQR
FT                 VIEVEGSYL"
XX
SQ   Sequence 1291 BP; 389 A; 293 C; 283 G; 324 T; 2 other;
     tattaggtca tcccagtcaa gatgactcac ttttgagagc tcatgctcgg agtgtagaaa        60
     tagctgacaa agaactaaac ctactgattt tttcactaac tatcagagat tgttttcatc       120
     ggttttcgcc aattttatca acaatggact tcaagacaaa aattattgaa tcaatttcca       180
     ccgaggaaca gcgaactata gtgaaatttt tcgttctaca agatcacagt gcccgcctca       240
     tccactccaa cctcagtaaa ctattcggta agaaggccgt ttcactctcc acagtcactc       300
     gttgggctgc tcagttcaga gccggagagg ttttcaccga aagaggccat ggtggtgatc       360
     gaagtgacca tgattctcga atggacagac gggccaaaat cgtcgagtgt ttcgatgaat       420
     cgagacattg gagtgtctcc tctttagctg tgaagacagg cataccgaaa tcgacggtcc       480
     atcgaatcat caaggaaaaa ttgggaataa agaaggtcct tggcaaatgg gtgccatact       540
     ttctgaccga aaatcagaaa aatcatcgag ttctcgcttc acagagtaac ttggcgacgt       600
     acaataaaga caaaacgact ctcaaaagga cgatatcgat cgatgagacc tgggtcgctc       660
     tgtacatgga gccagatcgc aaccagatga agcaatatct cttccctggt gagacagctg       720
     aggaggtacc ccgacaaaac atccacgcac gcaagcgtat gctgatcatg gccttggatt       780
     tcaacggaat cgcgttttac aaactgtgcc ctgaaaaaac taccgtgaat ggtgacctct       840
     acaagagctt cctatgcgaa tatcttcaga aatagttgag taatcgtgat ccgaagcacc       900
     tcaggctcca tcatgataat gcaagaccgc acacagctgc ctgcgttaaa gagtnattgc       960
     ancaaaagca gataaaactg tggaatcatc cgccttattc accggatatc tcaccgcttg      1020
     actatggtcg ttttggcgag ctgaaaagag cactgaaagg taccaatttc agtacttggg      1080
     acgagtttga gactcgtcta caacaagttg tagacgagtt caattcaacg ggccgaatca      1140
     cggctattcc tcgcctccca gagaggtggc agcgggtgat tgaagttgag ggctcttacc      1200
     tctaaaacgc cagttttcac tatttttcaa ttaaaacttt tcgagttatt aaaaatcaaa      1260
     agtgagtcat cttgactggg atgacctaat a                                     1291
//
ID   Mariner-5_PBa repbase;    DNA;    INV; 1317 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.03, Created)
DT   06-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1317
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 617-617 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1317 BP; 403 A; 257 C; 291 G; 366 T; 0 other;
     cattctgtca aataaatacc gggaattgtt catttcaaaa atccgcgtaa aagatatgaa        60
     aacaaatttt ttgctgtaag ttggtaccaa tgtatctaat tgtcacgtag agttttggcg       120
     ccatctgtca accagttagt ttacagctgt tggttttgtt agtcgatctc aagtgctctg       180
     cgatttttaa aatggataaa aatatcgaac aaagagtttg cctcaaattt tgtgttgcca       240
     acgaaatttc ttgtgctgag tcgttgaaaa tgttggagaa ggcctacggt gagtcagctt       300
     tatcgaaaac acgagcatac gagtggtaca aagcattcaa agaaggccga gaagtggttg       360
     aagacttgcc tcgttccgat cgatcttcaa cgtcttcgac tgacgaaaac atcgacaaag       420
     tgaaagaaat ggtgatggaa aatcgtcatt caagcttaag agagatggct caggatctgg       480
     acatgtctca cgaatccgtt cgcaccattt tagttgatgt tttgggcatg agacgcatcg       540
     cggcacggct tgttccgaag gagctgaatt ttcttcaaaa agagcaccgc aaacaggttg       600
     ctgaagacat gcttgaacga gccaattcgg aactctacat tcatgaaacg catcataacg       660
     gatgacgaga catgggttta tgagtttgac atgcaaacca gccaacaagc ttcggaatgg       720
     cgcttcgata acgagccgaa accgaaaaat cacatcaaag tcgctcgaaa atcaaagtca       780
     tgttgactgt tttctttgac tatcgtggta ttgtccactc ggaattcctt tcggagggac       840
     aaacagtcaa caaacaatat tatctgggcg ttatgaggcg tttgagagag aatgttcgcc       900
     ggaaaaggcc agatttgtgg aagaacaatt cttggatttt gcaccacgat aatgcgccgt       960
     cccacacatc gacccttgta cgcgaatttt tgaccaaaaa ctcaacgaat gtcatcgacc      1020
     aagcaccgta ttcgccagat atggtcccat gtgatttttt cctgttcccc aaactcaaat      1080
     tatcacttcg tggaaaacgt tttgagtcca ttgaagccat aaaacaaaat ttgcagaagg      1140
     agctgcaggc catatcggaa agtgcttata agaagtgttt cgacgactgg attattcgtt      1200
     ggcataagtg tatcgcatca aatggggcct attttgaagg cgacaaaata aatttgaatg      1260
     attaaaccaa tattttgtgt tttattgaac aattcccggt atttatttga cagaatg         1317
//
ID   Mariner-5_RPr repbase;    DNA;    INV; 1514 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 20.10, Created)
DT   02-JAN-2012 (Rel. 20.10, Last updated, Version -1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1514
RA   Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3251-3251 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..1287
FT                 /product="Mariner-5_RPr_1p"
FT                 /translation="MNLRSRKQATGPLLTVDHRRARLEFAREHRNWSENDW
FT                 RNVLFSDESRFALYAPDGRRRVYRRPGERYAPCNISGRLPFGGGSVMVWAG
FT                 ISMGAXTELHVFNRAILNADLYVREILQQYVIPYAPFIGENFIFMQDNARP
FT                 HTAACVVQYLQDTSIRVLRWPARSPDLNPIEHLWDELGRRLRWRNNPPRSL
FT                 EELRGALVEIWEELTQDFVRNLIRSMPRRLDAVMRAIHVTKILFLFF"
XX
SQ   Sequence 1514 BP; 428 A; 299 C; 341 G; 445 T; 1 other;
     ctgctccaca aaaaaagtgg cgcactttga aaaaagcgtt tattttttgt tttatcacat        60
     tttggggaaa gattattagt tttaattatt ttcataaact gtcagggaac aattaatcga       120
     atcaaggccc aaagttctcg tttaatcccc ttcggtcttt ttgtgtaaac aacaacgtga       180
     actttacctc aacagtaaat aaatttattg acctctacag ttgcgtttcg acttttttca       240
     agctgaaagc attgcaaact ctcaattaca gcagagcaag tggcccgtat tattgcatta       300
     gttgaggatg gacggagtca gcggtacgca gcacgaacgt tagggttgcc tgagaccacc       360
     gtccgtagag ccatccatcg ttaccgggag acaggcctct gcactcgcag acaaggttcg       420
     ggtcgaccaa gagccacaga agcacttgat gaccgattta ttagaattca cactctgaga       480
     aatcgtacat caactgcttc tgaaacagct caaacactgc ttactgttcg tggagtttca       540
     gtcagtgccg aaaccgtacg aagaaggctc gctgaaatga atttacgctc taggaagcaa       600
     gccacaggac cattgctcac cgtagaccat cggagagccc gtctagagtt cgctagggaa       660
     caccgcaact ggtctgagaa cgattggaga aacgttctct tttcagacga gtcccgtttt       720
     gctctctacg cacctgatgg gaggcgacga gtttaccgaa ggcctgggga gcgctacgct       780
     ccgtgcaata tttctggtag actaccattc ggaggtggtt cagtgatggt gtgggctggg       840
     atttctatgg gggctnagac tgagctccac gtgttcaaca gggcaatctt gaatgcagat       900
     ttgtatgtga gggaaatttt gcagcaatat gtgataccct atgcaccatt tattggggag       960
     aattttattt ttatgcaaga taatgcccga ccacacactg ccgcctgtgt tgttcaatat      1020
     ctacaggata ctagcattcg tgttttgagg tggccagcac gcagcccgga tttaaatcca      1080
     attgaacatc tttgggatga gctgggtagg cgattaagat ggagaaataa tcctcccagg      1140
     agcttagaag agttgcgagg tgctctggtg gagatatggg aggaattaac acaagatttc      1200
     gtgagaaatt taataaggag tatgccgagg agattggatg cagtaatgcg agcaatacac      1260
     gttactaaaa ttctttttct ctttttttaa tcggaagaaa tacatttttt tttcaaactc      1320
     attttttgcc gagaagtact tttttgttaa attaaaggtt ttcatttctt ttagatcatt      1380
     ttttatttta ttttagccct cccgtaactt tatacttctt atatttgcta actaaaataa      1440
     aatgtagaac aaaaaagtta cagagaaaaa aaaataacgc atttttaaag tgcgccactt      1500
     tttttgtgga gcag                                                        1514
//
ID   Mariner-5_SIn repbase;    DNA;    INV; 1313 BP.
XX
AC   .
XX
DT   21-NOV-2011 (Rel. 19.02, Created)
DT   21-NOV-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-5_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1313
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 322-322 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1257
FT                 /product="Mariner-5_SIn_1p"
FT                 /translation="MSDFAEQRSAIKFCLRNEISAAETCRMLQRAFGESTM
FT                 SQKNVYKWYKDFKEGRERADDLERSGRPSTSTDEQHVKKIKELVLENRRLT
FT                 IRDLVDMVGISIGSVQTILKDHLGLRKVKSRLVPKTLNFLEKERRVKVCEE
FT                 MISDYQDVYERIITGDETWIYAYDPETTDQSSEYRAKGEARPKKSRQSRSK
FT                 IKVMLTVFFDYRGVVHYEFLPPGQTVNKEYYLSVMRRLREAIRKKRPDLWK
FT                 DNSWFLHHDNAPSHTALILREFFAKNSTHIVPQPPYSPDLAPCDFWLFPKL
FT                 KRPLRGHRFESIEEIQRESLRALKAIPGNDFLACFEEWKKRWHKCIVSEGE
FT                 YFEGDEIDLDE"
XX
SQ   Sequence 1313 BP; 388 A; 245 C; 295 G; 385 T; 0 other;
     ctactgtgtt caaaaagtaa agtgaatttt taatttaaac ttcccgcgct aatcgattcg        60
     agcaaactgt tttattttta tgttggtact actgttagtg acatctgtgc caaatttcat       120
     gtgaatgtca tcattagtca tatagttacg cttgtgtttt ctaaacgact aaaagtgatt       180
     ttggcgattt ttacaatgtc tgattttgct gagcaaagaa gtgccattaa attttgtttg       240
     cggaatgaaa tttcggctgc ggaaacgtgc agaatgttgc agagggcctt cggtgaatcg       300
     actatgtcgc agaaaaatgt ttataagtgg tacaaagact tcaaagaagg cagagaacgt       360
     gctgatgact tggaacgctc cggacgacca tcaacgtcaa ctgatgagca acacgtaaag       420
     aaaatcaagg aattggtgct cgaaaatcgt cgattgacaa ttagagacct tgtcgatatg       480
     gttggcattt caattggatc agttcaaaca attttgaagg atcatttggg ccttagaaaa       540
     gtcaaatctc gtttggtgcc aaaaacactc aatttcctcg aaaaagagcg tcgcgttaaa       600
     gtttgtgaag agatgatttc tgactatcag gacgtctacg aacgcattat tacgggagat       660
     gagacttgga tctatgctta tgatccggaa acaaccgacc aatcgagtga atatcgtgct       720
     aaaggcgagg caagaccaaa aaaatcgcgc caaagtcgct caaaaatcaa ggttatgttg       780
     acagttttct tcgactatcg tggtgttgtg cattatgagt tccttccgcc gggccaaact       840
     gtcaacaagg aatattattt gagtgttatg cgtcgtttgc gtgaagctat tcgcaagaag       900
     aggccggatt tatggaaaga caactcctgg tttttgcatc acgataatgc gccgtctcac       960
     acggcattga ttcttcgtga gtttttcgcc aaaaattcca ctcatatcgt tccgcaaccg      1020
     ccttattcac ctgacttagc tccgtgtgac ttttggctat ttcccaaact caaaagaccg      1080
     ctccggggac accgctttga atctattgaa gagattcaac gtgaatcgct gcgcgctttg      1140
     aaggctatac cgggaaacga ctttttggca tgcttcgagg aatggaaaaa acgttggcat      1200
     aagtgcattg tatcggaggg ggaatacttc gaaggggatg aaattgattt ggatgaataa      1260
     ataaagattt ttcattttat aacaaaattc accttacttt ttgaacacag tag             1313
//
ID   Mariner-60N1_LMi repbase;    DNA;    INV; 682 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   non-autonomous; Mariner-60N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-682
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 55-55 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 682 BP; 205 A; 143 C; 154 G; 180 T; 0 other;
     cgagggggag ttggaaaata agtttcccct gtcgactgtg ggcagagttg tgtatgaaag        60
     gaaaaaaaaa tagaatgaga cattaaagat aagacatatc tttatttttc tacataattt       120
     ccaagtacat tgagacattt gtcaaaccgc tttataagct tcaaaaagcc gtccaggaaa       180
     aaatcagggc gttgcatacg gaagaagcgt tgaacggcta tgggcgaaag acgacacagc       240
     aggtgaacgc gcacgtgcaa gacaccgata caccattggg tagaggtcga ccatgaatat       300
     ggcaatgact ttctgtttcg gattgtgacg ggggatgaaa cgtgggtcca ccattacacg       360
     cccgaatcga aggccgcatc catggagtgg aaacatccgt catcacctgt ccgaaagaag       420
     ttcaaaagca ctccgtctgc aggtaaagtg ctactcaccg ttttctggga cgcaatgctt       480
     cttccgtatg caacgccctg attttttcct ggaaggcttt ttgaagctta taaagcggta       540
     tgacaaatgt ctcaatgtac ttggaaatta tgtagaaaaa taaagatatg tcttatcttt       600
     aatgtctcat tctatttttt tcctttcata cgcaactctg accacagtcg acaggggaaa       660
     cttattttcc aactccccct cg                                                682
//
ID   Mariner-60_HSal repbase;    DNA;    INV; 2963 BP.
XX
AC   .
XX
DT   11-APR-2012 (Rel. 19.04, Created)
DT   11-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-60_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2963
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 905-905 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1149..2108
FT                 /product="Mariner-60_HSal_1p"
FT                 /translation="MASLTEHERVSLLMMRGWGDRQRSYSEVRLLFNENFR
FT                 NEGEGISISTVSRTIRRFVETGSNKNRQKSGRPRSQTTEERQFEVAQSFVE
FT                 NPRLSIRKASQQLQMSVLSISKNLKTIKFHPYKIHLHHELNEDDFDRRVQF
FT                 SEVMMQRIDQQPNFLHNIVFSDEASFEITGKVNRHNFRYWDNENPHWMLEA
FT                 HTQRPQKLNVWAGLYDNQVVGPFFINGNLNSETYLQLLTDQIVPSIQEIVG
FT                 DNFDDVWFQQDGAPPHYGRIVRNYLNDTFPNRWIGRRGTIEWPPRSPDIAP
FT                 LDSFLWGYIKKKFISLNLVTWMSFNNGS"
XX
SQ   Sequence 2963 BP; 893 A; 568 C; 594 G; 908 T; 0 other;
     cagggtgtta taaaagtccc ggaagagcag aataactcga aaaatatgag tcctagaaaa        60
     aatgcgaagt actgggtttt tatgattttt tcctggctat ctgacggtga ccttggattt       120
     gaccttgaca atgaccttga aggtcatttc aaggtcaggt caattttttt aaatgggacc       180
     ccatactttt gaccccagaa atgaaaagag cggaaaattt tacgttcgga tatgaccttg       240
     aacactgcca aatttgacct ctgaaggtca cataaaggtc taagcttgtt ttaggctgaa       300
     aacgcgaata tcttcgaaaa tgcacctgct agggagcaat gttacgcata agaataagaa       360
     tgtagaggtc aacgagggac attcagccgt gaccttgccc ttattctcaa ggtcatgagt       420
     taagattatt attaaggtca aaccggactt ttttaggact gaaaatccat acttttgacc       480
     taaaagtgtc aagattgaaa aattttacgt tcggatatga cgttttcaac cttgaccttg       540
     ttcttaaggt tatgtgtcag tcatatcaag gtcaattaat ttttttaggc tggaaacaca       600
     tacttttacc cccccataat gtgaagagtg agattttacg ttacgtacga ggtcacactc       660
     cgattgttgg taattcctca atatcgggcg ccattttgga tcggtcatct tgaatttgta       720
     aaatccaacg tcggattcga tttcagaaac gacttcaaaa actccttaaa cgagatccaa       780
     tttttgttat tcttaaatat cggccgctat cttgaatcgg ccatcttgaa tttgcaaaat       840
     ccgacgtcgg attcggtttt agcgagctca aaaatcccag gatcggtatc cgaaaaattt       900
     attcgccatc gataaagtgt atgcttcaag gtttttattt gtctcgattc tatcagtgtc       960
     aaacagataa tagattgttt ttgagttttc atcgatttaa caagttttga tgtcattcta      1020
     gtccgttttg aattattatc atattattat taacgatcaa tggtacatta cttattattt      1080
     ttatttaaag gtaaagaaac cgaatttttt ataccaaatt tttgcaaatt ttttgttttc      1140
     aattccaaat ggcttctctt acagagcatg agagagtttc gctattgatg atgagaggat      1200
     ggggggatag acaaaggtca tacagtgaag tgagattgct gttcaatgaa aactttcgta      1260
     atgaaggcga aggtatttca atatcgactg tatctcgcac catcagacga tttgtagaaa      1320
     ctgggagtaa taaaaaccgc caaaaatctg ggaggccaag gtcccaaacg acagaagagc      1380
     gacaatttga agtagcccaa tcatttgttg aaaatcccag attgtcaatt agaaaagcat      1440
     ctcaacagct tcaaatgagt gtattgtcaa tttccaaaaa tctaaagacc attaagttcc      1500
     acccctacaa aattcatctc caccatgagt tgaatgagga tgattttgac cgcagggtgc      1560
     aattttcaga agttatgatg caaagaattg atcagcaacc gaactttttg cataatatcg      1620
     ttttttcaga cgaagcgtct tttgaaatta ctggtaaggt aaaccgtcat aattttagat      1680
     attgggacaa cgaaaatcct cattggatgc ttgaagcaca tacgcagcga cctcaaaaat      1740
     tgaatgtttg ggcaggtctt tatgataatc aagtggttgg gccttttttt ataaatggga      1800
     atttgaactc agaaacctat ctgcagcttc taacagacca aattgttcca tcaatacagg      1860
     agattgttgg tgataatttt gatgatgttt ggttccagca agatggggca ccgccacatt      1920
     atggacgcat tgttcggaac tatttaaacg atactttccc taatcgatgg ataggtagaa      1980
     gaggaacaat cgaatggcca ccgagatcgc ccgacattgc accacttgat tcctttcttt      2040
     ggggctacat aaaaaaaaag tttatttcac taaacctcgt aacctggatg agcttcaaca      2100
     acggatcata gacgaatgtg ctgcaatacc tccagaaatg ataaggagtg cgactgacaa      2160
     tttgtacgtc cgcttagcac actgtcaaac ggtcaatggg gaacattttg aacatctctt      2220
     gtaatctcag gccgagttac aagatgcttt gccttcggtg gccgggacta actgacacct      2280
     tgccttcagt ggtcgggttt gagacacctt gccttcagtg gtcgggtttg agacaccttg      2340
     ccttcagtgg tcgggttccg agacgcttta ctttcagtag acttcacgat cagtgaagta      2400
     acgtaaaacg cataattttg agaacaaggt caaggttgaa aacgtcatat ccgaacgtaa      2460
     aatttttcaa tcttgacact tttaggtcaa aagtatggat tttcagtcct aaaaaagtcc      2520
     ggtttgacct taataataat cttaactcat gaccttgaga ataagggcaa ggtcacggct      2580
     gaatgtccct cgttgacctc tacattctta ttcttatgcg taacattgct ccctagcagg      2640
     tgcattttcg aagatattcg cgttttcagc ctaaaacaag cttagacctt tatgtgacct      2700
     tcagaggtca aatttggcag tgttcaaggt catatccgaa cgtaaaattt tccgctcttt      2760
     tcatttctgg ggtcaaaagt atggggtccc atttaaaaaa ttgacctgac cttgaaatga      2820
     ccttcaaggt cattgtcaag gtcaaatcca aggtcaccgt cagatagcca ggaaaaaatc      2880
     ataaaaaccc agtacttcgc attttttcta ggactcatat ttttcgagtt attctgctct      2940
     tccgggactt ttataacacc ctg                                              2963
//
ID   Mariner-60_LMi repbase;    DNA;    INV; 1007 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-60_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1007
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 56-56 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(91..291,245..865)
FT                 /product="Mariner-60_LMi_1p"
FT                 /translation="DISLFFYIISKYIETFVKPLYKLQKAVQEKIRALHTE
FT                 EALNGYGRKTTQQVNAHVQDTDTPLGRGRPTRTCKTPIHHWVEVDHEYGND
FT                 FLFRIVTGDETWVHHYTPESKAASMEWKHPSSPVRKKFKSTPSAGKVLLTV
FT                 FWDAQGVLLLDFLEDATINAARYCATLSKLKEVIRKKRPGLLRSGVLLLDD
FT                 NARPHSATATQNHIATLGWERLHHPPYSPDLAPSDFHLFPALKKTLGGRRF
FT                 GSNADVKQAVQRFFRMQRPDFFPGRLFEAYKAV"
XX
SQ   Sequence 1007 BP; 280 A; 230 C; 239 G; 258 T; 0 other;
     cgagggggag ttggaaaata agtttcccct gtcgactgtg ggcagagttg tgtatgaaag        60
     gaaaaaaata gaatgagaca ttaaagataa gacatatctt tatttttcta cataatttcc       120
     aagtacattg agacatttgt caaaccgctt tataagcttc aaaaagccgt ccaggaaaaa       180
     atcagggcgt tgcatacgga agaagcgttg aacggctatg ggcgaaagac gacacagcag       240
     gtgaacgcgc acgtgcaaga caccgataca ccattgggta gaggtcgacc atgaatatgg       300
     caatgacttt ctgtttcgga ttgtgacggg ggatgaaacg tgggtccacc attacacgcc       360
     cgaatcgaag gccgcatcca tggagtggaa acatccgtca tcacctgtcc gaaagaagtt       420
     caaaagcact ccgtctgcag gtaaagtgct actcaccgtt ttctgggacg cccaaggagt       480
     tttgttgctg gactttttgg aggatgcaac catcaatgct gcgcggtact gtgccactct       540
     gtcgaaattg aaagaggtga ttcggaaaaa gcggcctggc cttctcagat ctggcgttct       600
     gctgttggat gacaatgcga gaccacactc ggcgacggca acgcaaaacc atattgcaac       660
     tcttggttgg gagcgcctac accatccgcc atacagtcct gatctcgcac caagtgactt       720
     ccatctgttt ccagctttga agaagactct cggcggaagg cgctttggaa gcaatgctga       780
     cgtcaaacaa gccgttcaac gcttcttccg tatgcaacgc cctgattttt ttcctggacg       840
     gctttttgaa gcttataaag cggtatgaca aatgtctcaa tgtacttgga aattatgtag       900
     aaaaataaag atatgtctta tctttaatgt ctcattctat ttttttcctt tcatacgcaa       960
     ctctgaccac agtcgacagg ggaaacttat tttccaactc cccctcg                    1007
//
ID   Mariner-61_HSal repbase;    DNA;    INV; 2697 BP.
XX
AC   .
XX
DT   11-APR-2012 (Rel. 19.04, Created)
DT   11-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-61_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2697
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 906-906 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1223..2290
FT                 /product="Mariner-61_HSal_1p"
FT                 /translation="MPDYTSNEIVDIILVLGECHNNYRQAAILYRNRFPHR
FT                 RHPNHCMISRLVLRQRQRQRQKRQRRHINVPERDDPTVLAVLGMIAINPRV
FT                 STRQIERELGIPKSTSHRILTTHNFHPYHITLTQQLTLNDFQQRLEFCRWA
FT                 QIMLNRDRIFFRFVLFSDEATFHNTGQLNRHNSHYWSVENPHWYREVNHQH
FT                 RWSLIVWCGILNGNLIGPYFFDENVNGNNYLHFLQQRLPALLEDIDLDTRQ
FT                 RMFFQQDGAPAHWSRRVRYHLDLTFPGRWIGRGGPVSWCPRSPDLSSPDFF
FT                 LWGYLKNVVYSKTPTTRENLMERITLACRSIPRNVLLSTVDSFERRVQLCV
FT                 DNNGQIFEHLLRS"
XX
SQ   Sequence 2697 BP; 829 A; 526 C; 485 G; 857 T; 0 other;
     cagggtgtcc cattttaaat gatccagccc aatatctcga aaactaaacc cagtagacaa        60
     aaatgtttca gacaaaagtt gtttggctcg aagggggaca taagatggtg ccattgattt       120
     gaccttggat agtcctctga aggtcacctt caatttttta aatggaactc cctatttttc       180
     attacatatt cttatagctc atctcgagag ctttccaaaa cactataact aagttacttt       240
     tcgttaagta cttgttaagt tataaggctt gaaagttgca atacagtgga ttgtcatttg       300
     aataaccatt tctacataca taactctaaa aattataacc taaaaatttg tagatataaa       360
     atttaaaaat taggatagtg gaattgaatt gtagttgtta actcgaatgt gccttgtgga       420
     aaagtttgag ttacaactct gatttcaatt tgactattca aaatcagtga tctgtaacaa       480
     tgatttcaga ttaaacatac ttgtttcgaa attatcaatt tctgattttt attactggtt       540
     acttgatgcg cttatcatcg ttgtctaact gagatgttca attactgcaa tatcaatgtt       600
     cgatgataaa actgtgtttg gaagactcga gatgtctttt cataactgac attcatactt       660
     gcttaagtca gtctttaggc tttttaactg atgctattcc tctgacgtca tcattttgat       720
     gatgtatttc taatccaaat acgagattac gtaaaattag ggttacgagc aatttgaata       780
     atttgattac taatcgtggg ccccaaagtg agttgcttaa ccgtcttttt ttcccagagc       840
     actcatccat ctataactca attggttaac tcaacacact cacgccgaca gtgcgctcct       900
     ttgcatattc tcatccttgt agtaatcata gtttttttat aaatttatct ttttatgcaa       960
     tttttctccc acgagttacc gagaatttga gactgatatc ccatcgtatc agcagagtaa      1020
     ccacctccaa aaggattact caattccttt gtactcacgc aacattttct gccttaatcg      1080
     gtccatccaa ccgggactga tccatgatgg ctgatggcaa agaatgatcc gtaaacgctt      1140
     aaatttgtct tagtcgtcca atatcaacca gaataataaa tctatcggct cttactttat      1200
     cttgtaactt aatgtacgca aaatgccgga ttatacttcg aacgaaattg ttgatattat      1260
     tctggtactt ggagaatgcc ataataatta tcgacaagca gcgatattgt accgtaatcg      1320
     atttcctcat agacgacatc caaatcattg tatgatttcc aggcttgtat tgcgtcaacg      1380
     gcaacgtcaa cgtcaaaaac gacaaagacg tcatattaac gtaccagaaa gggatgatcc      1440
     aacagtactt gccgtattgg gaatgatagc tattaatcca cgcgtgtcaa cgaggcaaat      1500
     tgaaagagaa ttaggtattc cgaaatcaac aagtcacagg atcttgacca ctcataactt      1560
     ccatccttat catatcactc tgacacaaca attaacactc aatgattttc aacaaagact      1620
     agaattttgt aggtgggcac aaataatgtt aaatcgtgat cgaatatttt tcagatttgt      1680
     tttatttagt gacgaagcaa cttttcacaa cactggacaa ttaaatcggc acaattctca      1740
     ctattggtct gttgaaaacc cacattggta tcgagaagtt aatcatcaac atcgctggag      1800
     cctcattgta tggtgtggca tattaaacgg aaaccttatc ggcccttatt tctttgacga      1860
     aaatgttaat ggtaataatt atttacactt tctacaacaa agattgccgg cattgcttga      1920
     agatatcgat ctggacacaa gacaacgtat gttctttcaa caggacggtg cgcctgcgca      1980
     ctggagtaga agagttagat accatttaga tctcacattc ccaggtagat ggataggacg      2040
     cggtggacca gtgtcatggt gtcctagatc tccagacttg tcaagtccag atttcttttt      2100
     atggggatac ttgaagaacg ttgtatattc aaaaacaccc acaacaagag agaatttgat      2160
     ggagcgtata actcttgcct gccgtagcat tccaagaaat gtacttttat cgacagttga      2220
     cagttttgaa cgtcgagttc aattatgtgt ggataataat ggacagatat ttgaacactt      2280
     attaagatca taatcctttc acacgaaaac tagattctga catggatcgg atcgtctgga      2340
     tcagtcccgc gcgatcttgc cttaaccggc cggatcagtc ccgatcttgc cttaatcggc      2400
     cggatcagtc ccgatcttgc cttataactt aacaagtact taacgaaaag taacttagtt      2460
     atagtgtttt ggaaagctct cgagatgagc tataagaata tgtaatgaaa aatagggggt      2520
     tccatttaaa aaattgaagg tgaccttcac gtgaccttca gaggactatc caaggtcaaa      2580
     tcaatggcac catcttatgt cccccttcga gccaaacaac ttttgtctga aacatttttg      2640
     tctactgggt ttagttttcg agatattggg ctggatcatt taaaatggga catcctg         2697
//
ID   Mariner-61_LMi repbase;    DNA;    INV; 1311 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-61_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1311
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 57-57 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           82..1233
FT                 /product="Mariner-61_LMi_1p"
FT                 /translation="MLCLFVVISLQFSSCYVSFVVAAVLLIMAAPLSICTK
FT                 EEQRSVIRFLWAEGVSGAEIHRRLSVQYGSSVLPQRSVYEWIEKFRNGRTS
FT                 VKHDEGAGRPFTATNEETIERSREMILLDRRLTIDEVAHRLQISHGSAYEI
FT                 IHNRLGFRKVCARWVPKQLTQLHKQTRLDICKKHLDRYGNEGDNFLDRIIT
FT                 GDETWIHHYEPESKRQSMEWKHPNSPCKKKFKTQPSAGKLMLTVFWDARGP
FT                 VLEHYGERGTTINSVRYSEMLTDRLKPAIRSKRRGLLSEGVVLLHDNARPH
FT                 TAVHTAETLQKLKFEVLDHPPYSPDLAPSDYHLFGPLKQALRGRRFDSDEA
FT                 VKEAVHSWLAAQPKTFFYEGIRKLVERWTKCIEKQGDYVEK"
XX
SQ   Sequence 1311 BP; 375 A; 265 C; 312 G; 359 T; 0 other;
     cgagggtaag tcaattatta tccgcaattt agttatattt ttgtttatgt tggtagtact        60
     gtcgttttac gttggtgacg catgctttgt ttatttgttg ttatatcttt gcaattttca       120
     agctgctacg ttagtttcgt tgtcgctgcc gtgctgttaa tcatggctgc tccgctgtct       180
     atttgcacca aagaagagca acgttcagtg atacgttttt tgtgggcgga aggtgtatca       240
     ggggccgaaa ttcatagaag actttcagta cagtacggga gcagtgtttt gccacaacga       300
     agtgtgtacg agtggattga aaaattccga aatggtcgca cgagtgttaa gcacgatgaa       360
     ggagccggac gaccgtttac cgccacaaat gaagaaacca ttgagcgatc acgtgaaatg       420
     attctcttag acagacgatt aactattgat gaagtggctc atcgtcttca aattagtcat       480
     ggttctgcct acgaaattat tcacaacaga cttgggtttc gtaaagtttg tgcaagatgg       540
     gtcccaaaac aactcacaca gttgcataag caaacgcgcc tcgacatctg caaaaaacat       600
     ttggatcgct atggtaacga aggggacaac ttcttagaca gaatcattac tggtgacgaa       660
     acatggatcc atcattacga gccggagagt aaacggcaga gtatggaatg gaaacatcca       720
     aattcgccgt gcaagaaaaa gttcaagacc caaccgtccg caggaaaact gatgcttacg       780
     gttttttggg atgcacgagg tcctgtactg gaacattatg gtgaaagggg cacaacaata       840
     aacagtgtac gttacagtga gatgcttact gacaggctaa agcctgcaat tcgaagcaaa       900
     cgccgaggat tgctgtcaga aggtgttgtg ttgttgcacg acaatgcccg tccgcatact       960
     gctgtccaca ctgctgaaac gctccagaaa ctcaaattcg aagtactgga tcatcctcca      1020
     tatagtcccg atcttgcccc ttctgactat cacttgtttg gtccactcaa acaggcatta      1080
     aggggccgtc gatttgactc ggacgaagca gtgaaggaag cggtgcattc ctggctcgca      1140
     gctcaaccga aaaccttctt ttatgagggc ataaggaagc ttgtagagcg atggacgaag      1200
     tgcattgaaa agcaaggaga ctatgtcgaa aaatgatgtt cttgtaagtt tcgtatttta      1260
     ttacaataaa attttataac tactttgcgg ataataattg acttaccctc g               1311
//
ID   Mariner-62_HSal repbase;    DNA;    INV; 2666 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-62_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2666
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 907-907 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1035..2096
FT                 /product="Mariner-62_HSal_1p"
FT                 /translation="MLIEKERILLLMYRGFGDRVRSYQEVADLFNATHPDR
FT                 NPISKSTVQYTVTRFLETGTVQDRPRSGRPKSATNDDMSLDVLLSFQENPH
FT                 TSVPRTAQAHDISQGSILNILKKHKYHPYKIVITQELMEDDFDRRIQFCEE
FT                 MMNRIDDNFLNFIVFSDEAMFQINGSVNRHNCRYWSDENPHWMSDLRTQYP
FT                 QKLNVWAGICSRGIIGPFLIDGNLNAEKYENLLRDHIIPDIRNKFGADMQH
FT                 VWFQQDGAPPHYAIRSREFLNRSFPGRWIGRRGAIEWPARSPDLSPLDFFL
FT                 WGYLKNKVYATKPRNLEDLSNRIMREASLITLEQINDVLSHFYERLAHCQM
FT                 VEGRQFEHLIN"
XX
SQ   Sequence 2666 BP; 804 A; 500 C; 538 G; 824 T; 0 other;
     cagggttctc aaaaagtctt cgaacgataa aatatctcga aaacaatcag tttttggaaa        60
     aaatgtttca ggcaaaagtt gtaaggttta aaatgatcta tttactgatc ttatcagttt       120
     gaccttggct agcgtcaaca aggtcagggc aaagtcacct tgaacttttc aaatggaacg       180
     ccctactttt tttggcatat tcttataacg tatttcaaga gctttccaaa acactacaac       240
     aaagtatttt tttgttaagt acatcccgag ttatgaagct tcaaagttac agtaccgtcg       300
     gcattagcat tacccaaggt gtaccgcgtg gaggttgcac gatcggattt acacctcttg       360
     tgtgtgtgtg tgtgtgtgtg tgtgcgcgcg cgtgcgtgtg tgcgtgtgtg cgtgtgtgcg       420
     tgtgtgtgtg tgtgcgtgtg tgcgcgtgtg cgtgcgtgtg tgtgtgtgtg cgtctgcgtg       480
     ttatgtaaca gaaacaagga ccccacggtt cgtcactccc gtagtatttc atgactccaa       540
     accctttctg ttgtgtaaag tgactttatc tcatctttta agatgtgcaa catttttcaa       600
     ttaattaaat gttcaaattg tcttccttct accatttgac aatgagctaa acgttcatag       660
     ggatagcagt atttcagtaa taatttggcc agtgattaat cactgtaaat ttttcagtaa       720
     ttcttagtac tttattttcg taagggaact cttaagaaaa tctactttaa cgaactagga       780
     gtaaactaca aagcttatta agagtttagt ttgcaaggag tttactttgg caaattgatc       840
     tactaacatc aaaggcgatc attagtgaac atcggacacc acgaggactt acagctaaaa       900
     ctcgtgcata ctggtggttt tcgaaaacgc ttcttgctcc gtgtattcta caaactaatc       960
     gtattcgctt gcgtctcgat ctttatctgt tttgttcttt tttcgttcta caatttcaaa      1020
     tttctatctg aaaaatgttg atcgaaaaag aaaggatttt gctgcttatg tatcgagggt      1080
     ttggagaccg tgttagatca tatcaggaag tagctgatct cttcaatgct acacatcctg      1140
     atcgcaaccc tatttctaag tctactgttc agtacacagt gacacgtttt ttggaaactg      1200
     gaacagttca agaccgacct cgtagcggaa gaccaaaatc cgcaacaaat gatgatatga      1260
     gtttggatgt tttgctgtca tttcaagaaa atcctcatac atctgtgcca agaacagcgc      1320
     aagcccatga tatcagtcaa ggtagcattc ttaacatttt aaaaaagcat aaatatcatc      1380
     cttacaaaat tgttatcact caagaactta tggaagatga ttttgataga agaattcaat      1440
     tttgtgaaga aatgatgaat cgaattgatg ataacttttt gaattttatt gttttttcag      1500
     atgaagctat gtttcaaata aacggttctg ttaatcgtca caattgcaga tactggagtg      1560
     atgaaaatcc acattggatg agtgatcttc gcacacagta tccacaaaaa ttgaatgtct      1620
     gggcaggaat ttgcagtcgc ggtattattg gtccattttt gatagacggt aatttgaatg      1680
     cggaaaagta tgaaaattta ttgcgagatc atattatacc cgacatacga aataaatttg      1740
     gcgcagacat gcaacatgtt tggttccagc aagatggagc accgcctcat tacgcaataa      1800
     gaagtcgaga atttctgaat cgttcttttc ctggtcgatg gataggtagg aggggtgcta      1860
     ttgagtggcc tgctagatca cctgatttgt ctcctctaga tttttttctt tggggatatc      1920
     tcaaaaacaa ggtttatgcg acaaaaccac gtaatttgga agaccttagc aatcgaataa      1980
     tgcgggaagc atctctcatc actttagaac aaataaacga tgtgctcagt catttctatg      2040
     aacgtttagc tcattgtcaa atggtagaag gaagacaatt tgaacattta attaattgaa      2100
     aaatgttgca catcttaaaa gatgagataa agtcacttta cacaacagaa agggtttgga      2160
     gtcatgaaat actacgggag tgacgaaccg tggggtcctt gtttctgtta cataacacgc      2220
     agacgcacac acacacacac acacacacac acacacacgc gcgcgcgcac acacacgcac      2280
     acacacacac acacacacac acacacaaga ggtgtaaatc cgatcgtgca acctccacgc      2340
     ggtacacctt gggtaatgct aatgccgacg gtactgtaac tttgaagctt cataactcgg      2400
     gatgtactta acaaaaaaat actttgttgt agtgttttgg aaagctcttg aaatacgtta      2460
     taagaatatg ccaaaaaaaa gtagggcgtt ctatttgaaa agttcaaggt gactttgccc      2520
     tgaccttgtt gacgctagcc aaggtcaaac tgataagatc agtaaataga tcattttaaa      2580
     ccttacaact tttgcctgaa acattttttc caaaaactga ttgttttcga gatattttat      2640
     cgttcgaaga ctttttgaga accctg                                           2666
//
ID   Mariner-62_LMi repbase;    DNA;    INV; 1319 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-62_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1319
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 58-58 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1241
FT                 /product="Mariner-62_LMi_1p"
FT                 /translation="MATFSLLEQRAIIRFLNLRGVTPIEIHRQLKETCGDG
FT                 VMDVSKVRSWVRQFNEGRTSCDNKPKQPRARTSRSDDMIEKVERIVLGDRR
FT                 MTVEQIASRVGISVGSVHTILHDDLKMRKVSSRWVPRMLTDDHKAARVACC
FT                 QAMLTRNDSMNGTFFSSVVTMDETWMPFFNPETKRQSAQWKHTDSPPPKKF
FT                 RVTASAEKMMVSMFWDSEGVILTHCVPKGTTVTGASYENVLKNKFLPALQQ
FT                 KRPGRAARVLFHQDNAPAHRANVTQQFLRDNNFEVIPHAPYSPDLAPSDFW
FT                 LFPSMKDTLRGRTFTSRAAIASAIFQWSKQTPKEAFAAAMESWRQRCEKCV
FT                 RLQGDYVEK"
XX
SQ   Sequence 1319 BP; 356 A; 305 C; 334 G; 324 T; 0 other;
     cgaggtgcat tcaagttcta aggcctccga ttttttttct ccggactgga aagagataga        60
     aacatgcgca ttgttttaaa atgaggccgc gttcattgtc aatacgtccc agagatggca       120
     gcaccgtacg gcagatggaa ttttaccgcc agcggcgaga atgagaactg ttttagatac       180
     ttaaaatggc gacgttttcc ttacttgaac agcgtgcaat cattcgtttt ctgaatttgc       240
     gtggtgtgac accaattgaa attcatcgac agttgaagga gacatgtggt gatggagtta       300
     tggatgtgtc gaaagtgcgt tcgtgggtgc gacagtttaa tgaaggcaga acatcgtgtg       360
     acaacaaacc gaaacaacct cgggctcgca caagccggtc tgacgacatg atcgagaaag       420
     tggagagaat tgttttgggg gatcgccgaa tgactgttga acagatcgcc tccagagttg       480
     gcatttctgt gggttctgtg cacacaatcc tgcatgacga cctgaaaatg cgaaaagtgt       540
     catccaggtg ggtgccacga atgctgacgg acgaccacaa ggctgcccgt gtggcatgtt       600
     gccaagcaat gttgacgcgc aacgacagca tgaatgggac tttcttttcg tcggttgtga       660
     caatggatga gacgtggatg ccatttttca atccagaaac aaagcgccag tcagctcaat       720
     ggaagcacac agattcaccg ccaccaaaaa aatttcgggt aaccgccagt gctgaaaaaa       780
     tgatggtgtc catgttctgg gacagcgagg gcgtaatcct tacccattgc gttccaaagg       840
     gcactacggt aacaggtgca tcctacgaaa atgttttgaa gaacaaattc cttcctgcac       900
     tgcaacaaaa acgtccggga agggctgcgc gtgtgctgtt tcaccaagac aacgcacccg       960
     cacatcgagc taacgttacg caacagtttc ttcgtgataa caactttgaa gtgattcctc      1020
     atgctcccta ctcacctgac ctggctccta gtgacttttg gctttttcca tcaatgaaag      1080
     acactctccg tggccgcaca ttcaccagcc gtgctgctat tgcctcagcg attttccagt      1140
     ggtcaaaaca gactcctaaa gaagccttcg ccgctgccat ggaatcatgg cgtcagcgtt      1200
     gtgaaaaatg tgtacgtctg cagggcgatt acgtcgagaa gtaacgccag tttcatcgat      1260
     ttcgggtgag tagttaatta gaaaaaaaat cggaggcctt agaacttgaa tgcacctcg       1319
//
ID   Mariner-63_HSal repbase;    DNA;    INV; 1283 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-63_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1283
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 908-908 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..1203
FT                 /product="Mariner-63_HSal_1p"
FT                 /translation="MATFTPTKQHLREVLLHYYILKKSAAETHRMLVDIYG
FT                 DHAPSSTTCKEWFRRFRSGDYDVSDREREGAPKKFEDAQLQDLLEEDPSRT
FT                 LEDFSNELNVDRSTVGKRLHALGMVQKSGNWVPHQLKERDIERRLVTCEML
FT                 LQRQKRKGFLHRIVTGDEKWIYYDNPKRLKSWVMPGEPGPSTPKRNIHGSK
FT                 VMLCIWWDQKGVIYYELLKPSETITGDRYRLQLIRLNRALKEKRPEWDNRH
FT                 NKLILLHDNARPHVAKPVQKYLEGLNWEILPHPPYSPDIAPSDFHLFRSMQ
FT                 SALSGERFTSHKGIEKWLNEWIESKEPDFFLRGIRLLPERWEKVVASNGAY
FT                 FE"
XX
SQ   Sequence 1283 BP; 382 A; 249 C; 302 G; 350 T; 0 other;
     ttgggtatgg gaataagttt ccgccctttt cagaaagata tcgctagtgg tactaatttc        60
     gtgtttgatg gaacggctat acttgtgttt tgaaggtgta tttgtgagct ttgaatcgca       120
     gtagtagaca ttcgtttgaa gcgtaaacat ttttttttcg cgtcgaaaat ggcaacattt       180
     accccaacga agcagcattt gcgggaagtg ttactccatt actatattct gaagaaaagt       240
     gctgctgaaa cgcatcgaat gcttgttgat atttacggcg atcatgctcc gtcgagtacc       300
     acgtgtaaag agtggtttcg gcgttttcga agtggtgatt atgacgtgag cgaccgagaa       360
     cgcgaagggg cacctaaaaa attcgaagat gcacaactgc aagatttact cgaagaagat       420
     ccgagtcgaa cgctcgaaga tttttcaaac gagttaaatg ttgatagatc taccgtcgga       480
     aaacgtttac atgcgttggg aatggtccaa aaatcaggaa attgggtgcc acatcaattg       540
     aaggagagag acattgaaag acgtctggtg acgtgcgaga tgctgcttca aagacaaaaa       600
     aggaagggtt ttctgcatcg aattgtcact ggcgatgaaa aatggatcta ctacgacaac       660
     cccaaacgac tgaaatcatg ggtgatgcca ggtgaaccag gtccatcaac tccaaaacgg       720
     aatatccacg gttcgaaagt tatgttatgc atctggtggg atcagaaggg cgttatttat       780
     tatgagcttc taaaaccgtc cgaaaccatc actggggatc gttaccgact gcagttaata       840
     cgtttgaacc gagctttaaa agagaaacga ccggaatggg ataataggca caacaagctg       900
     attctgctac acgacaacgc taggccccac gttgcaaaac cggtccaaaa atacttggaa       960
     ggattgaatt gggaaatctt gccccacccg ccgtattcac cagatattgc tccttcggat      1020
     ttccacttat ttcggtccat gcagtcggcc ctttctggag agcggttcac ttctcataaa      1080
     ggtatcgaaa aatggcttaa tgaatggatc gagtcaaaag aacctgattt ttttcttcga      1140
     ggaatccgtt tactacctga aagatgggag aaagttgtcg cttccaatgg ggcgtacttt      1200
     gaataaaatc attttgtatt tttttgttta aataaacgac taatttgtat ttaaaacggg      1260
     cggaaactta ttcccatacc caa                                              1283
//
ID   Mariner-63_LMi repbase;    DNA;    INV; 1911 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-63_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1911
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 59-59 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(276..473,477..632,559..1617)
FT                 /product="Mariner-63_LMi_1p"
FT                 /translation="MNVHLQKVFEVMTIGINAVLQSSYHGLSGIPYHFGTY
FT                 RSTCSDNSLSYIVQIVNIRRIRRIHLTCRHVNTIRRLRNTTLIGTVRLVSS
FT                 KQANVNDVFLRRTSRYASHLRRMPTKFSESMMYSFEEQVDMLLIYGECQRN
FT                 SVRARDLYAERYPQRTHPTRRTFKYVYDKLRTTGSLTYRKHIRQRKVTNEE
FT                 AEIGTLATVVRDPCVSSRQIARESGMSQSSVVRVLHRHKYHPYHISLHQEL
FT                 TGTDCMRRMEFCRWAQRQIQRDDTFINLILFTDEATFTNHGNVNLHNMHYW
FT                 ATENPCWLRQVAHQRPWSVNVWCGILEDRIIGPYFIEGNLNGRMYTTFLQE
FT                 TLGLLLEEIPLGTRNRMWYQHDGCPAHFSLMARNELQRRFPNRWIGRGGDV
FT                 SWPARSPDLTPLDFFLWGFVKDIVYKEVPTTPEDMRERIVRACASISAEVI
FT                 RNTTQSMIRRLQRCIDTNGHHFEHLL"
XX
SQ   Sequence 1911 BP; 562 A; 387 C; 431 G; 531 T; 0 other;
     cagggtgagt cactaactat tgccaccaag aataactcat aagtatgata ggagctgaaa        60
     agtttgtggg acaaaattgc acgggacaac gggggccaga atatgacgtt ggttttttgt       120
     tgctaggtgg ggtcgcttca gagatatgaa ggtcaacttt tttcttaatg ggatgctata       180
     gtttggtact tattttctga tagcggctat cgagacgaat ccaatgatgt gtaacagtaa       240
     ggtctttgaa ggtcaaagaa ggtaaaaaaa gtggcatgaa cgtccattta cagaaggtgt       300
     tcgaagtgat gaccattggt atcaatgcag tgctgcaatc ttcttatcat ggattgagtg       360
     gtattccgta tcacttcggc acttatcgaa gcacatgctc tgacaattct ctctcgtata       420
     tcgtgcaaat agtaaatatt cgccgaatac ggcgtatcca tctaacgtgc cgttgacatg       480
     taaacaccat tcgacggttg cgcaatacaa cactaatagg aacggtaaga ctagtatcgt       540
     cgaagcaagc gaatgtgaat gatgtattcc ttcgaagaac aagtcgatat gcttctcatt       600
     tacggagaat gccaacgaaa ttcagtgaga gctagagact tatacgctga aagatatcct       660
     caacgtactc accctacacg tcgtacattt aaatatgtgt atgataaatt gagaacaact       720
     ggatctttaa cgtatcggaa acatatccgg caaaggaaag ttactaacga ggaagcggaa       780
     attggtactc ttgccactgt ggttcgagat ccttgtgtta gttcgcgtca aatcgcaagg       840
     gaatctggca tgagccagag tagtgttgtt cgtgttctgc atcgccataa atatcatcct       900
     taccatatca gtctccacca agaattaact ggtacggatt gtatgcgtcg catggaattc       960
     tgccgatggg ctcaacgtca gattcagagg gatgacacat ttattaattt gattttattt      1020
     actgacgagg ctacattcac gaaccatgga aatgttaatt tgcataacat gcattattgg      1080
     gcaactgaaa atccatgttg gctgcggcaa gttgcacacc aaagaccgtg gtcggtgaat      1140
     gtatggtgtg ggattctgga ggacagaatt ataggcccct atttcatcga aggaaatctt      1200
     aatggtagga tgtacaccac attcctgcaa gaaacattag gtctgttatt ggaagaaata      1260
     cctttaggaa caaggaacag aatgtggtat caacacgatg ggtgtccggc acatttttcg      1320
     ctgatggcta gaaatgagtt gcagagacga ttcccaaatc gttggattgg acgcggagga      1380
     gatgtgtcgt ggccggctcg ttcgccagac ttgacgcctc tggatttttt cttgtgggga      1440
     ttcgtaaaag acattgttta taaagaagtt ccaactacac ctgaagatat gcgagagaga      1500
     attgtcagag catgtgcttc gataagtgcc gaagtgatac ggaataccac tcaatccatg      1560
     ataagaagat tgcagcgctg cattgatacc aatggtcatc acttcgaaca ccttctgtaa      1620
     atggacgttc atgccacctt tttgaccttc gttgaccttc aaagacctta ctgttacaca      1680
     tcattggatt cgtctcgata gccgctatca gaaaataagt accaaactat agcatcccat      1740
     ttaaaaaaac aaagttgacc ttcatatctc tgaagcgacc ccacctagca acaaaaaacc      1800
     aacgtcatat tctggccccc gttgtcccat gcaacttttg tcccacaaac tttcagctcc      1860
     tatcatactt tcggagttat tcttggtggc aatagttagt gactcaccct g               1911
//
ID   Mariner-64_HSal repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-64_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 909-909 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1198
FT                 /product="Mariner-64_HSal_1p"
FT                 /translation="MERSKLHFRHSLLLLFDLKKSAAEAHQTLFRIYGDAA
FT                 PSYPNCRFWFQRFKSGDFNVNDKERPGGPKKFEDNELQDLLDENSAQTLKE
FT                 LSDSLAVDESTVSRRLHAMEKIQKEGKWIPYELTENAISNRFNIAVSLLAR
FT                 QKKKSFLWLIVTGDEKWIYYNNPKRKKSWVSPEEPSTSTPKRNIHGHKVLL
FT                 CVWWDQHGVVYYELLKPNETVTADVYRRQLNKLNDVLLQKRPAIASNRRKV
FT                 ILLHDNARPHVTTVVKDTLLQLEWKVLPHPAYSPDIAPSDYHLFRSMQHGL
FT                 AGTRFRNAEEVRKWIDDWIASEPTSFFQHGIAMLPERWEKVVENDGKYFD"
XX
SQ   Sequence 1277 BP; 415 A; 247 C; 263 G; 352 T; 0 other;
     ttaggtgctt gcatgtattt tgatcagcgc catatattgg tgaaaatgcg aagtatcaat        60
     gtaaaacaac ctaacctaac tgttaaattc gatggttttc acatttctct acataaaata       120
     acagtttacc atttagtatt attgagttat tcagtgtata cagacgctaa tcatggaacg       180
     ctcaaaattg cattttcgac attcattact tttgttgttt gatttgaaga aatctgctgc       240
     cgaagcccat caaacacttt ttagaattta tggtgatgct gctccgtcat atcccaattg       300
     tcggttttgg tttcaacggt ttaaaagtgg tgattttaat gtcaatgaca aagaacggcc       360
     tggaggacca aaaaagttcg aagacaacga attgcaagac ttattggacg aaaactcagc       420
     tcaaactctc aaagaacttt cagacagctt agcagttgat gaatcaactg tttccagacg       480
     tttacatgcg atggaaaaga tccaaaagga gggaaaatgg ataccatacg aattgactga       540
     aaatgccatt tcgaaccgtt tcaacatcgc agtttcattg cttgccaggc aaaaaaagaa       600
     gagttttctg tggcttattg ttactggcga tgaaaagtgg atctactaca acaatcccaa       660
     acgcaaaaag tcatgggtta gtccagaaga gccatccaca tcgacaccaa agagaaatat       720
     tcatggccat aaagtcttgc tgtgcgtatg gtgggatcag cacggtgtag tgtattacga       780
     gctgctaaaa ccgaatgaaa ctgttactgc agatgtctac cgacgtcaat tgaacaaatt       840
     gaacgacgta ttgttgcaaa agagaccagc aatagcgagt aacagacgca aagtcatcct       900
     cttgcatgac aacgctagac ctcacgttac aacagttgtg aaggatacac tgttgcagct       960
     cgaatggaaa gttctgccgc acccagcgta ctcaccagac atagcgcctt ctgattatca      1020
     cttgttcaga tcgatgcagc atggcttggc tggcacacgg tttcgaaatg ctgaagaagt      1080
     gcgaaaatgg atcgatgatt ggatcgcttc cgaaccaaca tcgttctttc aacacggtat      1140
     cgccatgttg ccagaaagat gggaaaaagt tgtagaaaat gatggaaaat attttgattg      1200
     aaatatattg taccgatttt tttcaataaa tgccttttta aagtgaaaaa atgatcagaa      1260
     tacatgcaag cccctaa                                                     1277
//
ID   Mariner-64_LMi repbase;    DNA;    INV; 2537 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-64_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2537
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 60-60 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(447..1133,1087..1416)
FT                 /product="Mariner-64_LMi_1p"
FT                 /translation="MYTNEEKLDILLLYGECKRNAVQTIQRYRTIYPDRQC
FT                 PTRQAIARIMKTLVRTGCLNVKTRTRKKTATDREHEEAVLATTLMNPHSGT
FT                 RHIAKECGISQTSVVRILHRHKFHPYHLSLHQALGDRDFERRTEFCRFALQ
FT                 QLRDDTTFFQRVLFTDEATFTNHGNVNLHNMHYWAAENPHWLRQVQHQRPW
FT                 SVNVWCGIIGNCIVGPYFIPGVLNGHSYAHSLRTFCQFFMDIRTHIPYEHS
FT                 ASSSRGGTTGYSKVYVAATRRMSSSLVPCCNANTGGKISWTLDRTKFCCKM
FT                 ACEVPRSDPPISFFGGHSKMQSMTKPQLRQTICVVESPVHALTYHPL"
XX
SQ   Sequence 2537 BP; 714 A; 551 C; 561 G; 711 T; 0 other;
     cagggtgagt cacgtaagac gtaacatccc ttttatttcg tgaacggtta cacatatcga        60
     aatgcggttt cggcacatgc tagagcgtcg aggggcacat atatttttgt ttggtgaacg       120
     gttttagcac cggtatcaac tgagatattg aagcaagtac tttttttaat ggaactgctt       180
     actttttata actgcattcg atagctcttg agaagacaat tacagtgata tagcgtttgt       240
     taatgttgac gttgaaacct gtcgtaaaaa attcgagaaa tgtcctagaa tttgagggca       300
     cagtggccgg aatcggcgtt agcagggcaa acaccgccaa gtggagctct cgtgctacgt       360
     agcgtcagaa tgtcagcaca tttgactgtc gacttgtctg cactgcaggc cgctcatttc       420
     cgcttcaaca tccattgcgt gcagacatgt acacgaatga ggagaagttg gatatactac       480
     ttttatatgg tgaatgtaaa agaaatgccg tgcaaacaat acagcggtat aggactatct       540
     atccggatcg ccaatgtccg acgcgccagg caattgcacg aatcatgaag acgctagtgc       600
     ggacaggctg cttgaacgtc aaaacgagaa caagaaagaa gactgcaacc gacagagaac       660
     acgaagaagc tgtcctggct acgacgctaa tgaatccgca cagtggtacg agacatattg       720
     ccaaggaatg tggaatcagc cagacgagtg tcgttcgcat cttgcatcga cacaaattcc       780
     acccctatca tctgtcacta catcaggcac tcggcgaccg tgatttcgaa cgtcgtacag       840
     aattttgtcg gtttgccctt cagcagctga gagacgacac tacgtttttc caacgtgtgc       900
     tctttaccga tgaagcaacg tttactaacc acggtaatgt aaatttgcat aacatgcact       960
     actgggcagc cgaaaatcca cattggcttc gtcaggtgca acatcaacgg ccgtggagcg      1020
     taaacgtatg gtgcggcatc ataggcaatt gtattgtggg accttacttc atcccaggcg      1080
     tgctgaatgg acattcgtac gcacattcct tacgaacatt ctgccagttc ttctagagga      1140
     ggtaccactg gatattcgaa agtgtatgtg gctgcaacac gacggatgtc cagctcactc      1200
     gtcccgtgtt gcaacgcaaa tactggagga aaaatttcct ggacgttgga taggacgaaa      1260
     ttctgttgta aaatggcctg cgaggtcccc cgatctgacc cccccatttc tttctttggg      1320
     gggcactcaa agatgcagtc tatgacgaag ccccaactac gccagacgat atgcgtcgtc      1380
     gaatcgccgg tgcatgctct aacatatcat ccactgtaat tacatctgtt catcgttctt      1440
     tcgaacggcg attgcaaatg tgcctttcag tccatggtca acattttgaa cacatgttga      1500
     aataaaggat aaagttgtgt ttctgtaaga taaacctaat gttatgtgct ttgggtggtt      1560
     accaaagcat tgttagtaaa ttgtttatta cagttacgtg gtacaaaatt gcattgcaat      1620
     gtcaaataag tcgacagcgt gtattgcacg tagctggtaa cactgtcatt acgcacttac      1680
     gttcagcatg aaacgacgtt tcgttaagaa gaatatttat tttgcggtgt acaggtggtc      1740
     accaaattat ttttaataaa atgtttagtt caatgaatgt gtcccatatg atataattta      1800
     gagcagtgta ggttgagaca gttgtctgac agcatgtatt gtacctctta gaagcacaca      1860
     gccacataca ggaaacgata ggtcaattat tccttctata atttagatat ttcatacagt      1920
     agttgctttt tgcagcgtat aagacctctt tattttcgaa gaatgaacag gtgatttctc      1980
     tgtttcagct cacgtacatc cgggaagata aacaaatgcg aagtagtttt cctaagccct      2040
     ttgatacggt agattctagc ctatgtcata tgttccatat acaacattcg taggtgaacc      2100
     tgcatccact gtaggtctta agttggttca ggggaaacaa agcgttacta tagtcgcgca      2160
     ggcctacttt acagtataca attacgcagc ctggtccggg acgcctcttg gtagtgtttg      2220
     cactgctaac gccgattccg gccaccgtgc cctcaaattc taggacattt ctaatttttt      2280
     acaacaggtt tcaatgtcaa cattaacaaa cgctatatca ctgtaattgt cttctcaaga      2340
     gctatcgaat gcagttataa aaagtaagtg gttccattaa aaagtacttg cttcaatatc      2400
     tcattgatac cggtgctaaa accgttcacc aaacaaaata tattgcccct gacgctctag      2460
     catgtgccga aaaccgcgtt tgatatgtgt aaccttcacg aaatgaaagg ggtgttacgt      2520
     cttacgtgac caccctg                                                     2537
//
ID   Mariner-65_HSal repbase;    DNA;    INV; 1279 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-65_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1279
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 910-910 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           175..1203
FT                 /product="Mariner-65_HSal_1p"
FT                 /translation="MSCDKVHIRHCLLFAFQLKKNASEAKEMICSALGENA
FT                 ISYSTCKKWFQKFRDGNFNLEDDERPGQPKKFEDDDLEQLLAENPCQTESE
FT                 LASALEVTQQAISIRLRKLGKIQKESRWVPHVLSVDNKARRYDTALSLLSR
FT                 FKRKDFLHKIVTGDEKWVYYENPKRRKSWVNPGEPSTSIAKPNIHAKKVLL
FT                 CIWWDFKGVIHFELLKPDETVTAERYKHQLQRVSDEIERKRPFTGKGPRPV
FT                 ILLHDNARPHTAKATKDTLNLLGWEVLPHPAYSPDLAPTDFHLFRSLQHHL
FT                 ADSHFKTYEEVENCIKDFIDSKPPSFYQMGIRQLPERWKKCVDISGDYFPD
FT                 "
XX
SQ   Sequence 1279 BP; 403 A; 277 C; 282 G; 317 T; 0 other;
     ttaggtgtac aaattaattc tcggccccaa catttaatgt actgtagcac ttatttaagc        60
     ggaaactttt tcccgccaag tttggtactg aataatacca acctaatgga actataaaac       120
     ccgaaattca atcgacataa cctcaaaaaa ttgaccgtga gagtagagaa cacgatgtcg       180
     tgcgacaaag tacatattag gcactgctta cttttcgcgt ttcaattgaa aaaaaatgcc       240
     tccgaggcaa aggaaatgat ttgttcggca ttaggagaga atgctatatc ctatagtacg       300
     tgcaaaaagt ggttccagaa gttccgggat ggaaatttca atctcgaaga cgatgaacgc       360
     cctggacaac caaagaagtt cgaagatgac gatttggagc agttattggc agaaaaccca       420
     tgccagaccg aatctgaact tgcttcagca ttagaagtaa cccagcaagc catttctatc       480
     cggctgcgaa agctgggaaa aattcaaaaa gagagccgtt gggttccgca cgtgctttcc       540
     gtggacaaca aagcgagacg ctacgatacg gctctgtctt tgctttctcg gtttaaaagg       600
     aaggacttcc tgcacaaaat agtgacggga gatgaaaagt gggtgtatta cgagaaccca       660
     aaaagacgaa aatcatgggt gaatccgggt gagccttcga catcgatcgc gaaacccaat       720
     attcatgcca aaaaagttct tttgtgcatt tggtgggact tcaagggtgt gatacatttt       780
     gaactgctta aaccggatga aactgtcact gctgaacgct acaaacatca acttcagcgt       840
     gtgagtgatg aaatcgaacg taaaagacct tttactggca aggggcctag accggtaata       900
     ttgctgcacg acaacgcaag gcctcacacg gcgaaagcga ctaaggacac ccttaatttg       960
     ttgggctggg aggttttgcc acacccggcg tattcaccgg acttagctcc gacagatttt      1020
     catttattcc ggtcccttca acaccacctt gcggactcac acttcaagac atacgaagag      1080
     gtcgaaaatt gcattaaaga cttcatcgac tcgaaaccgc cgtcttttta tcaaatgggg      1140
     atccgccagc tccctgaaag gtggaagaaa tgtgtcgata ttagtggaga ttactttcct      1200
     gactgaagca taatctgatt ctatgtaaat aaaccttaat tctcactaaa aaaggccgag      1260
     aattaatttg tacacctaa                                                   1279
//
ID   Mariner-65_LMi repbase;    DNA;    INV; 2211 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-65_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2211
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 61-61 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(645..971,862..1422)
FT                 /product="Mariner-65_LMi_1p"
FT                 /translation="QNKTYEYVFNFLRLRDTGSLLPRAEGRGPQRADRTLE
FT                 AEERILDRIQEDPTQSTRSIARQVGVSHTVVHRTLKEERLRPYHIQRVQAL
FT                 EEQDFPPRREFSEWFLLHSAAKRSVCGLTTFNAYKHWKNKISLHDVNSQSG
FT                 FCYTVQHDFVNKILVTDEACFTRDGITNFHNMHTWSVHNPRHVVATHFQRR
FT                 FSVNVWAGMLDDYIIGPYVLPARLTGNYYRTFLEETLLPTLLEDIPLGIRH
FT                 NMWFLHDGAPPHIGHRVRRFLDRRFPGRWIGRSGPRRWPARSPDLNPQDFY
FT                 FWRQ"
XX
SQ   Sequence 2211 BP; 604 A; 455 C; 502 G; 650 T; 0 other;
     cagggtgtaa acggtataag ccgccaaaat tatacagatg gtacatctct gtgtgcggac        60
     ttgacaaaaa agtctagtaa catgtttgcg tatttcctac ggttgtccca gaaagaaaca       120
     gttcgtctca ggatgttttt ggaaaagtag acacttggca gtgtacgtac gtaagcaatc       180
     ggttcctgtt attgcccgct gcgcgtattg acatcgcgag cgtgaatcgt aaacacatag       240
     gcaactacgg cctgagtggc tgcgtcattg taatacgccg agcgacgaca gtcgtcgagt       300
     aacctgtgca gacgttattg caactctgtt aactgttagg atggaaggga gatttactat       360
     tgctgaacta tgcgatattc atttaattta tggcgaggca aaaggtgttg cgagggcagc       420
     tgtacgaatt tatcgagaac gcttcccaca acgacttcct gcacgagaga catttgctgc       480
     tgttcaccaa aggtttgtgt cattgtaatt ctctacttgt acgcgattat tatgcattta       540
     cttcttaata aagtacagta gttatctgta cctttttaaa ttttcgtctg tatgcgaaac       600
     gtatcttctg ttctgatatg ctttcctttt ttgttacatc atgacagaat aaaacttacg       660
     agtacgtatt taatttcctt agattgagag atactggctc tttactgccc cgcgcagaag       720
     gcagaggccc acaacgcgcc gatcgtacat tggaagctga ggaaagaatt ctggaccgca       780
     tccaggagga tcctactcag agtactagaa gcatcgcccg ccaagtgggt gtatcgcaca       840
     ctgtcgttca tcgcactttg aaagaggagc gtctgcggcc ttaccacatt caacgcgtac       900
     aagcattgga agaacaagat ttccctccac gacgtgaatt ctcagagtgg tttttgttac       960
     acagtgcagc atgattttgt caacaaaata ctcgtcacag atgaagcgtg tttcactcgc      1020
     gacggaataa ctaatttcca taacatgcac acgtggagtg tacacaatcc tcgccacgta      1080
     gtggcaacac attttcagcg acgattttcc gtaaatgtgt gggcgggtat gctcgatgat      1140
     tacattattg ggccttatgt tttacctgca cgtttgactg gtaactatta ccgaacgttt      1200
     ctagaggaaa cattgctacc aacgttgtta gaagacattc cgttaggcat acgtcataac      1260
     atgtggttcc tccacgatgg tgctccaccc cacattggtc acagagtacg cagatttttg      1320
     gatagacgat ttccaggacg atggatcggg cgttcgggtc cacgtcgatg gccagcacgc      1380
     agccctgatt taaatccaca ggatttttac ttctggcgcc aatgaaggaa attgtttatg      1440
     cttagcaagt taagaatgtg cgcgaactta cgcagaggat tttcgatgct gccaatacca      1500
     taaggcaaat atgcatgtgt gtgaacgagt gcgaggaaac tgtgttcgct gtcatgaagc      1560
     atgtgtagga tcgaatggta ttgtgtaaga ggaaacaaag taatttgggt ttcattttcg      1620
     ttagtgttgt ataaaaggaa aataaactga atttaatttt tgatacggtt gtgttgtaaa      1680
     aagaggaaat ggttgattgt aagtaatgca caattactag gtaactggtt gattttgtac      1740
     taagggaaac acattttctt tgatattagc ttttctttac taccacgacc ttcataatgg      1800
     tactgtaaaa gagaaaagtc tggttgtact taatttattg tttatgaaaa atgaattaca      1860
     cattcttgac aacccaatgg ctgttcaaat tgcttgtttc agcagcacct agccgccgtg      1920
     ccgcgtcgtt gtacacgtcc gatgtttaca tttctcgtcg cgtagtgcat tcgcgctccc      1980
     cgcaggcgcg tgctggcagc gcggataggc cacgcggtta cagggctctc tcgtgtatcg      2040
     tcagtcgaca atgtaaacag aaatacgcct atcatcagtc ctacaaatat tggtttttac      2100
     gaatacaaaa ataaagtaca tgatacaaca atatttcatt agactttttt gtcaagcaca      2160
     cagagatgta ccatctgtat aattttggcg gcttataccg tttacaccct g               2211
//
ID   Mariner-66_HSal repbase;    DNA;    INV; 1306 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-66_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1306
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 911-911 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..1178
FT                 /product="Mariner-66_HSal_1p"
FT                 /translation="MLKPSAEYNRRAAIIESVRAGRSATEIIRFFGYPRST
FT                 VYDVVAKYNESEKSNEGFATPARKTHSKERVVRTPEIIQRAQELIFEDPGQ
FT                 SIRKLSSVVGVSEKTMRRIVEEDLRYKSYTIKVRQMLSEAARTKRVERCNL
FT                 LLCSLRNNAAGRLRFFSDEKIFTVDAKINRRNDRWLAHDPEDVPIVSRTKF
FT                 PANVHVLSVVSSEGDVMPPHFFNKGENVTKEVYLHVLINVVKPWMETVSSG
FT                 KPYVFQQDGAPAHTSHLVQNWLSDNVDMFWSKEFWPPNSPDLNPLDFYVWS
FT                 VVERVTNKSRHPNVASLRAAIEAAFADMDRDSLKRACKRFRPRMEAVIQAE
FT                 GGYIE"
XX
SQ   Sequence 1306 BP; 370 A; 278 C; 321 G; 337 T; 0 other;
     cagggtgcgg cgccaaaatc cggacaaaat tcaatttgaa tttcccgccg ttctatacca        60
     cttcgagagg tcgcgattgg cgtccaaata gcttgacgca tgtactaaac attcataacc       120
     tcgaaacagt cgcaatgttg aaaccaagtg cggagtataa tcgaagagcc gcgattatcg       180
     aaagtgttcg cgctgggcgc tcagcgacag aaatcattcg attcttcggg tacccaagat       240
     cgactgtgta tgatgtcgtc gcgaagtata acgagtcgga gaagtccaac gaaggttttg       300
     caacaccggc aaggaaaact cactcgaagg agcgcgttgt caggacgccc gaaatcattc       360
     aacgggctca ggagctgatt tttgaggatc cagggcagtc gattcgaaaa ttgtcgtcgg       420
     ttgtcggtgt gagtgaaaaa actatgcgtc gaatcgtcga ggaggacctc cgctacaagt       480
     cttatacaat taaagtgaga cagatgcttt ccgaagctgc caggacaaag cgagttgagc       540
     gctgtaacct gcttttgtgt tctttacgaa acaatgctgc cggacgcctc aggttttttt       600
     ctgacgaaaa aatttttact gtcgatgcga aaatcaatcg aaggaatgat cgctggctcg       660
     cccatgatcc tgaagatgtc cccattgttt ccagaacgaa atttccggcg aatgttcacg       720
     tgctaagtgt tgtgtccagt gagggtgatg tcatgccacc gcatttcttt aacaaagggg       780
     aaaatgtcac aaaagaagtt tatttgcatg ttctgataaa tgtggtgaag ccgtggatgg       840
     aaactgtatc gtctggaaag ccgtatgttt tccagcagga cggtgcgccc gcgcacacaa       900
     gtcatttggt gcaaaattgg ttgtcggaca acgtcgacat gttttggtcc aaagaatttt       960
     ggcctcccaa cagcccagat ttaaatcctt tggacttcta tgtatggagc gtggttgaaa      1020
     gggtcactaa caagtccaga catccaaacg tcgcatcatt gagagccgct attgaagcgg      1080
     cattcgccga tatggaccgt gactcattaa aacgggcctg caaacgcttc agaccgagaa      1140
     tggaggcggt cattcaagca gaagggggtt atattgagta aatgtgttct ttatgaccta      1200
     acaaacaatt tagtaaaaaa aataattata aacttctcca tttttgcaat aaaaattatg      1260
     tttcaaaaaa atgtttaatt tgtccggatt ttggcgccgc accctg                     1306
//
ID   Mariner-66_LMi repbase;    DNA;    INV; 1383 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-66_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1383
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 62-62 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           207..1268
FT                 /product="Mariner-66_LMi_1p"
FT                 /translation="MAGARLTFDERKSVLKWYFKYENINEVQRQWRNEYQT
FT                 EPPTRLTIRRIRDKFEAEGCVKDVHKQRSGRPVTVTSPANSRRVLQQFTRS
FT                 PQKSVRQCARETGVSRSSVRRILKTAKWKCYIPRLLHAMNEDDPDRRMEYC
FT                 EWFTNMVRNDEEFAEMIVWSDEAQFKLNGTVNRHNCIYWAAENPNVHVDKA
FT                 VNLPGVNVWCGLSYRGLIGPFFFDGTVTGEVYLQKLQTSILPAIRDLYGDG
FT                 RFYFQQDGAPAHYQNRVRAYLDENLPGRWIGRRGAVEYPPRSPDLTPLDFY
FT                 LWGTLKDVVYRQKPRTLDELRESIVHSCADIQLNTLQSVVRAAVRRHRLCV
FT                 DVNGDHFEHLQ"
XX
SQ   Sequence 1383 BP; 383 A; 295 C; 336 G; 369 T; 0 other;
     cagaggggtc caaaaatgta tccactgttt aaaggtccat aacttgcaaa ctaattgacg        60
     gagttgtctc atctttggta gtgtaatagt ttgtagttcc ggcaatcgcc acacaagcgt       120
     tgaattgcgt tgttttgttt tgtcagatga cagtcgccgg atagtcagtg ttttgttctt       180
     agttgcacct agttactcga gtaaacatgg ctggcgcaag gcttacattc gatgaaagga       240
     agtcagtttt gaagtggtat tttaagtacg aaaacattaa tgaggttcaa cggcaatggc       300
     gaaatgagta tcaaacagag ccaccgacac gtttaacgat tcgtcgcatt cgagacaaat       360
     ttgaagccga aggctgtgtt aaagatgtac acaaacaacg atctggacga cctgtaacag       420
     taacaagtcc agctaactcc cgtcgtgtgt tacaacaatt cacccgctca ccacagaagt       480
     ctgtgagaca gtgtgcccgt gaaactggag tgagtcgctc aagtgttcgg cgaattttga       540
     agacagcaaa gtggaagtgc tacatcccac gattgctaca cgcaatgaac gaggacgacc       600
     cagatcgtag aatggagtac tgcgagtggt ttactaacat ggtgcgcaac gatgaagagt       660
     ttgcagagat gattgtgtgg tctgatgagg cacagttcaa actcaatggt acagtaaatc       720
     gccacaattg catctactgg gccgccgaaa atccgaacgt ccatgtagac aaagccgtga       780
     atttgccagg tgtaaatgtg tggtgtgggt tgtcttaccg gggcttgatt gggccattct       840
     tctttgacgg cacagttacc ggtgaggtgt accttcagaa gcttcagaca tccattttac       900
     ctgccatccg agacttgtat ggagacggaa gattttactt tcaacaagat ggtgccccag       960
     cccactacca aaatcgtgtt agggcttatc tcgacgaaaa tctaccagga agatggatag      1020
     gccgtagagg tgctgtggag tatccaccac gttccccaga cttaactcct ctggactttt      1080
     acctgtgggg aacactaaag gacgtcgttt atcgacaaaa gccacgcaca ttggatgaac      1140
     ttcgagaatc catcgtacat tcatgtgcag atatccaact gaacacgttg cagtcagtag      1200
     ttcgtgctgc agttcggcgg catcgtttgt gtgtggatgt taatggtgac catttcgaac      1260
     acctacagtg atatctttaa gttggacttt aagctacact ttcaccaaaa atgagacaac      1320
     tccgtcaatt agtttgcaag ttatggacct ttaaacagtg gatacatttt ttggacccct      1380
     ctg                                                                    1383
//
ID   Mariner-67_HSal repbase;    DNA;    INV; 916 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-67_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-916
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 912-912 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..837
FT                 /product="Mariner-67_HSal_1p"
FT                 /translation="MEQRANIKFCFKLGKTFTETFELMKKVYGDDCLSRTR
FT                 VFEWYKRFQDGRDALEDDPKPGRPKNKNRDELVEKVREMIAYDANSTVRWI
FT                 AEELNTTKDMIHEILPEYRAPGSWFLLHDNAPSHRTVAVREFLAKKQVCVL
FT                 QHPPYSPDLSPCDYFLFPKLKLAMKGTFYDSVTQVQEAVTRVIEAIPKNDI
FT                 KKSMLALVERAQRCIDAEGMYFE"
XX
SQ   Sequence 916 BP; 296 A; 169 C; 197 G; 253 T; 1 other;
     cacagtatgt cggaaaaata acggaacttt ttaaatttaa agaaaactac taacgccatc        60
     tattgaaaca atatataatc tgaaagctgt atatctcctc tacaaaacga gaccgccatc       120
     attagaatcg atcaacggat tgtgaagttg tagcgcttaa agtgacagta ccttttgtca       180
     cctcgtcaca aaaacacgat ggaacaaaga gctaatatta aattttgttt caagctcggt       240
     aaaactttta cagaaacatt tgaattgatg aaaaaagttt atggtgatga ttgcttatcc       300
     cgtacacgtg tgttcgagtg gtataagcga ttccaggacg gtcgtgatgc tttggaagac       360
     gacccaaagc caggccggcc aaaaaacaaa aatcgcgatg agttggtgga aaaagtgcgt       420
     gaaatgatcg cctacgatgc gaattcgact gtgagatgga tagcggagga attaaatacg       480
     accaaagaca tgattcacga aattttgccc gaatatcgag cgccgggaag ttggtttttg       540
     ttgcacgata atgcaccatc tcacaggacc gtcgctgttc gtgaattttt ggcgaaaaaa       600
     caagtctgtg tgcttcaaca tcctccgtat tcgcctgatt tatctccgtg tgactatttc       660
     ctgttcccga aactcaaact ggccatgaaa ggaacgtttt atgacagtgt tacacaagtc       720
     caagaagccg tgacgagggt cattgaggcg attccgaaaa acgacataaa aaaatctatg       780
     ctagcattgg ttgaacgtgc ccagcggtgt attgatgcgg aagggatgta ttttgaataa       840
     aaagaaataa ttttggcaaa ataactaatt gttttttttw atttaaaaag ttccgttatt       900
     tttccgacat actgtg                                                       916
//
ID   Mariner-67_LMi repbase;    DNA;    INV; 1436 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-67_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1436
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 63-63 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(147..386,690..1229)
FT                 /product="Mariner-67_LMi_1p"
FT                 /translation="MLALVPCIPSFCSNASCNSFMETIVEVPNVVMWNGLP
FT                 CNFHLVPQLGQISCRSCRPPNMTFHAVPNMLNGGEIWGSCWPGRDEWRRVV
FT                 FSDESRRCLGANDGRTRVWCRAGECENLECTRQRQTGPTPGIMVWGAISYT
FT                 GRSPLVFVVGKLNSTRYIETIIQPVLPPFMHQQGDVLFQQDNARPHVSRTT
FT                 QRALLGVRQLPCPSLSPDLSPIEHVWGRMKRHLGAVYTTGTRSGPTEASDG
FT                 NCMAGHTVRLHSAPLRSSS"
XX
SQ   Sequence 1436 BP; 339 A; 351 C; 382 G; 364 T; 0 other;
     cactcctgga aaatgaaaaa agaacaccat gaattcgtcg acccagcaga gggaaatttt        60
     attgacacat tcttgaggtt gtatacaaca cacgatcaca caggcagagc cgtacgcacg       120
     tgagtacagt caccagagcg tccgcaatgt tggcgttagt accgtgtata ccctcctttt       180
     gcagcaatgc aagctgtaat tctttcatgg aaacgatcgt agaggttccg aatgtggtta       240
     tgtggaatgg cctgccatgc aatttccacc tggtgcctca gttgggccag atttcgtgcc       300
     gctcatgcag accgcccaac atgacgtttc atgcggtccc aaacatgctc aatgggggag       360
     agatctgggg atcgtgctgg ccagggtagt tgacgtacac cttgaagagc acgttgggtg       420
     gtacgggata catgtggatc tgcattgtcc tgttggaaaa gcatatcacc ttgttggtgc       480
     atgagtggta gcaagacggg ttaaatgatg gtttcagtgt accgtgcact gttcaatgtt       540
     ctctagacga tcactagagg agaatggcga gtgtagaata tcgctcccct cacaatgatg       600
     cacgatcatg tgtgccgtta gagtgtcctc cgctcacgcc ccaacatcgt tcagcccgcc       660
     tccaatggtg tcatggtagg cgcttatgaa gggacgaatg gagacgtgtc gtcttcagtg       720
     atgagagtcg tcgctgcctc ggtgccaatg atggtcgtac gcgtgtgtgg tgtcgtgcag       780
     gggagtgcga aaatctggag tgtacgcgac agaggcaaac ggggccgaca cctggcatca       840
     tggtgtgggg agccatatcc tacactggcc gttctcctct ggtgttcgtt gtgggaaaat       900
     tgaacagtac acggtacatt gaaaccatca ttcaacccgt cttgccaccg ttcatgcacc       960
     aacaaggcga tgtgcttttc caacaggaca atgcacgtcc acacgtatcc cgtacaaccc      1020
     aacgtgctct tctaggtgta cgtcaactac cctgcccatc attatcccca gatctgtccc      1080
     ccattgagca tgtctggggc cggatgaaac gtcatcttgg cgcggtctac acgaccggca      1140
     cgagatctgg tccaactgag gcatcagatg gaaattgcat ggcaggccat accgtaagac      1200
     ttcattcggc acctctacga tcgtcttcat gagaaagttg caccctgcat tgctgcaaaa      1260
     ggagggtata cacgatacta gcgtcgacat tgtgcacgct ctggtgactg tactgacgtg      1320
     cgtatggttc tgactgcgtg atcgtgtgtt gtatacatcc tcaagaatgt gtcaataaaa      1380
     tttcgctctg ctgggttgac gaattcatgg tgttcttttt tcattttcca ggagtg          1436
//
ID   Mariner-68_HSal repbase;    DNA;    INV; 2281 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-68_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2281
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 913-913 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           706..1776
FT                 /product="Mariner-68_HSal_1p"
FT                 /translation="MRLTDKERITILMMRGFGDRIRSYQEVTNLFNNTYIN
FT                 RPPISKSSVYRTVDRFERTGSIEDEPRSGRPKDATNDDKALEILLNTIENP
FT                 HTTLTKLSQQSETSITSVRRILQEHKYHPYKMHLVQELSEDDFDRRIEFCD
FT                 TMMTRFDDNNQFFTWICFSDEATFELNGSVNRHNLRYWTDENPHWMRDCHT
FT                 QYPQKINVWAGIFSNRIIGPFFLDGNLTAEIYLNLLQNRVVPAIRNIVGDA
FT                 FEHVWFQQDGAPPHFGLNVRHFLHETFVGRWIGRRGTIEWPPRSPDLNPLD
FT                 FFYWGHLKSMVYETKPRNIDDLKERILNVSDSITPEVLRNVLNTFYVRLGH
FT                 CQAAQGHQFEHLTG"
XX
SQ   Sequence 2281 BP; 713 A; 434 C; 457 G; 677 T; 0 other;
     cagggtctgc caaaagttcc ggaacggcta attatttaaa aaaataatga ttgtttaaaa        60
     caatgtttga aacaaaagtt gtagggctta aaaaagctat cagatattga taattgtttg       120
     accttggaat gaccttgaga aacgttatca aggtcgacat aaaaatctta aatggaaccc       180
     cctatttttt gttacatatt cttatagctg acgttgagac gtttccgaaa cactggttac       240
     aaatcttctt tccataagaa cttttccagt tatgggactt gaaagttaaa ataccaccgg       300
     cattagcatt acccaaggtg taccacgtgg aggttgcacg gtcggattta cacctcttgt       360
     gtggttgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtca cagcagagat aaggacccca       420
     cggttcgtca ctgccgtagt atttgcgtat tagtatgcag cgtagcgact gagcgtccgc       480
     gctaggtagt gttttatccc caccactcac gcgcagagca ctcgggccca cgcacgctac       540
     gcacacagag ctggcgcagc ttcagtaaat ttgctaaaga agattggtgc gaagttaact       600
     ttgtctcaaa aaacaaaatc agaaatatca acctgtggat ataatctatc ctacactaac       660
     attttattca ttcttcgttt agtgtaattg ttttcacttt ggacaatgcg tttaactgat       720
     aaggaaagaa ttactattct tatgatgcga ggttttggtg atagaattag atcttatcaa       780
     gaagtaacca atttatttaa caatacatac attaatcgtc ctccaatttc aaaatcatct       840
     gtttatcgga ctgttgatcg ttttgaaaga actggatcaa ttgaagacga accaagatct       900
     ggaagaccta aagacgccac caacgatgat aaagctctag agattttgct aaatacaata       960
     gaaaatcctc atacaacgct tacaaaatta tctcaacaaa gtgaaactag cataacatcg      1020
     gttcgtagaa ttctacaaga acataagtac cacccgtata aaatgcattt ggtacaggag      1080
     ctgtccgaag acgattttga caggagaatt gaattctgcg atacgatgat gacacgattt      1140
     gatgataata atcaattctt tacttggatt tgtttctccg atgaagctac ctttgaatta      1200
     aatggatcag ttaatcggca taatttgagg tactggactg atgaaaatcc tcactggatg      1260
     agagactgtc acacgcagta tccccagaag attaatgttt gggccgggat attctctaat      1320
     cgtatcatag ggccattttt tctagacggg aatttgacag cagaaattta cttgaatttg      1380
     ttgcaaaacc gagtggtacc agctatccga aacattgttg gagatgcttt tgaacatgtt      1440
     tggtttcaac aagatggggc tccacctcat ttcggtttaa atgttcgtca ttttctacat      1500
     gaaacttttg ttggtcgatg gattggtaga agaggtacga tagaatggcc gccaagatct      1560
     cctgatctaa atccgttaga ctttttctat tggggacatt taaaaagtat ggtctatgaa      1620
     acgaaaccta gaaacataga cgatctaaaa gaaagaatat taaatgtttc agattccatt      1680
     acaccagaag ttttgagaaa tgttttaaat acattttatg ttcgcttggg acactgtcaa      1740
     gcagcacaag gccatcagtt tgaacattta acaggataat atgcacacat actaccctcg      1800
     acagacatag gccgcgtaca cgcacgcaca cacacacaca cacagcagag agggtttgga      1860
     gtcaataaat actacggcag tgacgaaccg tggggtcctt atctctgctg tgacacacac      1920
     acaagaggtg taaatccgac cgtgcaacct ccacgtggta caccttgggt aatgctaatg      1980
     ccggtggtat tttaactttc aagtcccata actggaaaag ttcttatgga aagaagattt      2040
     gtaaccagtg tttcggaaac gtctcaacgt cagctataag aatatgtaac aaaaaatagg      2100
     gggttccatt taagattttt atgtcgacct tgataacgtt tctcaaggtc attccaaggt      2160
     caaacaatta tcaatatctg atagcttctt ttaagcccta caacttttgt ttcaaacatt      2220
     gttttaaaca atcattattt tttgaaataa ttagccgttc cggaactttt ggcagaccct      2280
     g                                                                      2281
//
ID   Mariner-68_LMi repbase;    DNA;    INV; 1407 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-68_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1407
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 64-64 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           232..1269
FT                 /product="Mariner-68_LMi_1p"
FT                 /translation="MPRVRRRNAYHHVSDFDKGRIVAYRDCGLSYRDIAAR
FT                 VGRDPMTVSRIWNRWVQEGNTERRAGSQRPRITSSRDDRHLIRMAVTDRAA
FT                 TSRSLSQQMGTFARQQPSARTVRRRLQQHGLSARRPWLRLPLTLHHRQERL
FT                 RWCTQRRTWVHEWQNVIFSDESRFCLQHHDGRIRVWRHRGERTLEACIRHR
FT                 HTGVSPGVMVWGAIGYTSRSPLVRIDGTLNSGRYISDVLRPVALPFIRSLR
FT                 NPTFQQDNARPHVAGPVRAFLDTENVRLLPWPAHSPDLSPIENVWSMVAEQ
FT                 LARHNTPVTTLDELWYRVEAAWASVPVHAIQALFDSMPRRIKAVITARGGC
FT                 SGY"
XX
SQ   Sequence 1407 BP; 337 A; 349 C; 358 G; 363 T; 0 other;
     cactcctggc cattaaaatt gctacaccac gaagatgacg tgctacagac gcgaaattta        60
     accgacagga agaagatgct gtgatatgca aatgattagc ttttcagagc attcacacaa       120
     ggttggcgcc ggtggcgaca cctacaacgt gctgacatga ggaaagtttc caaccgattt       180
     ctcatacaca aacagcagtt gaccggcgtt gcctggtgaa acgttgttgt gatgcctcgt       240
     gtaaggagga gaaatgcgta ccatcacgtt tccgactttg ataaaggtcg gattgtagcc       300
     tatcgcgatt gcggtttatc gtatcgcgac attgctgctc gcgttggtcg cgatccaatg       360
     actgttagca gaatatggaa tcggtgggtt caggagggca atacggaacg ccgtgctgga       420
     tcccaacggc ctcgtatcac tagcagtcga gatgacaggc atcttatccg catggctgta       480
     acggatcgtg cagccacgtc tcgatccctg agtcaacaga tggggacgtt tgcaagacaa       540
     caaccatctg cacgaacagt tcgacgacgt ttgcagcagc atggactatc agctcggaga       600
     ccatggctgc ggttaccctt gacgctgcat cacagacagg agcgcctgcg atggtgtacg       660
     caacgacgaa cctgggtgca cgaatggcaa aacgtcattt tttcggatga atccaggttc       720
     tgtttacagc atcatgatgg tcgcatccgt gtttggcgac atcgcggtga acgcacattg       780
     gaagcgtgta ttcgtcatcg ccatactggc gtatcacccg gcgtgatggt atggggtgcc       840
     attggttaca cgtctcggtc acctcttgtt cgcatcgacg gcactttgaa cagtggccgt       900
     tacatttcag atgtgttacg acccgtggct ctacccttca ttcgatccct gcgaaaccct       960
     acatttcagc aggataatgc acgaccgcat gttgcaggtc ctgtacgggc ctttctggat      1020
     acggaaaatg ttcgactgct gccctggcca gcacattctc cagatctctc accaattgaa      1080
     aacgtctggt caatggtggc cgagcaactg gctcgtcaca atacgccagt cactactctt      1140
     gatgaactgt ggtatcgtgt tgaagctgca tgggcatctg tacctgtaca cgccatccaa      1200
     gctctgtttg actcaatgcc caggcgtatc aaggccgtta ttacggccag aggtggttgt      1260
     tctgggtact gatttctcag gatctatgca cccaaattgc gtgaaaatgt aatcacatgt      1320
     cagttctagt ataatatatt tgtccaatga atacccgttt atcatctgca tttcttcttg      1380
     gtgtagcaat tttaatggcc agtagtg                                          1407
//
ID   Mariner-69_HSal repbase;    DNA;    INV; 2307 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-69_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2307
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 914-914 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           784..1860
FT                 /product="Mariner-69_HSal_1p"
FT                 /translation="MQHLTERDRISVLMMRGWGDRLRSYQDVKDLFNVTFR
FT                 DENTPISKSTVERTVRRFEETGSVKNRLKTGRPAAATNEEKALDVLQSFVE
FT                 NPQTSVRRTAQEHEINPMSVHKILKRNKFRPYKIRLVHELNEDDFDRRVQF
FT                 CETMIAKIDAEPDFLSNIVFSDEATFQLNGIVNRHNCRLWSDTNPHWMWEH
FT                 NTQYPQKLNVWAGILNNRLIGPFFIEGNLTAHSYEDMLRNQIVPAINAIVG
FT                 ENFQQVWFQQDGAPPHYGRNVRIYLDTIFPERWIGRRGTIEWPARSPDLTP
FT                 LDYFLWGYLKDQVYKTKPRNLNDLRDRILDEAALIPNEYIEDAVSGFYHRL
FT                 AHCQTMNGEQFEHLIH"
XX
SQ   Sequence 2307 BP; 717 A; 408 C; 425 G; 757 T; 0 other;
     cagggtgtat aaaaagtacc gggacggtga aatatcacaa aaactaagca ttttagaaaa        60
     aaatgtttca aataaaaatt gtagggtttc aaaagatcta tttactgaca ttatgagttt       120
     gaccttgggt ggcgtcgcca aggtcaggac aaggtcacct tgaatttttt aaatgggacc       180
     ccctattttt tattgcatat tcttgtagtc ccttcttcag accttttcaa agcactataa       240
     ttttttccac tttgagtaag ccgtttcgaa gttatcgagc tttttatgat aagatgtcca       300
     gccagcggct ggagcaattt cgtgacttgt atttcagaca catgtaatat taaaaaaagt       360
     aatactaatg tactaaattt ataacagcac taaaattcac cttcgaatca tttcaaatca       420
     attgcaatga atttgacttg aagtagaaca cattacttgt acatgatacg cgttgtttca       480
     tacggaaaag ataaatgatt tttcttactg atttttcttt ctttaattga attatcgatt       540
     ttgttatcta attaatacaa atttctgttt attggataaa tctttttgtt tcctagctta       600
     ttcgttagac tttacttttt cttttagaga ttaacattat tctcaaacgc ttttgtaagg       660
     atttcctcaa tttttatttt gcttatttct gtacattttt ttccatttag ttcattttaa       720
     agtattgctg atagttattc attcgtttca aaatttccat ctcgataatt ttcatcaatt       780
     aaaatgcaac accttaccga acgcgataga atatctgtct tgatgatgag gggctggggt       840
     gatagattaa gatcgtatca agatgtaaag gatcttttca atgtaacttt tcgagatgag       900
     aatactccta tttcgaaatc aactgttgaa agaactgtaa ggcggtttga agaaacagga       960
     agcgttaaaa atcgtcttaa aacaggaagg cctgccgcag caacaaatga agaaaaggca      1020
     ctggatgttt tacaatcatt cgtagagaat ccacaaactt ctgtccgcag aactgctcaa      1080
     gaacatgaga taaatcctat gtctgtgcat aagatattaa aaaggaataa atttcgccct      1140
     tacaaaatac gacttgttca tgagctaaac gaagacgatt ttgatcgacg tgttcagttc      1200
     tgtgagacta tgatagcgaa aatagatgca gaacctgact ttttatctaa catagtcttc      1260
     tcagatgaag caacgtttca attaaacggt attgttaata gacataattg cagattatgg      1320
     tcagatacga accctcactg gatgtgggaa cacaatacgc aatatccaca gaaattgaac      1380
     gtttgggcag gaatattaaa taacagattg ataggaccat tctttattga aggcaacttg      1440
     acagcccatt catatgaaga catgctgaga aatcaaatcg tccctgcaat caacgcgatc      1500
     gttggtgaaa actttcaaca ggtgtggttt caacaggatg gtgcaccacc gcattatgga      1560
     cgaaacgttc gtatttattt agacacaatt tttcctgaac ggtggatagg gaggagaggc      1620
     acgatcgagt ggccagctcg gtcaccggat ttgacacctc tcgactactt tctctggggt      1680
     tatctaaaag atcaagtata caaaactaaa cctcggaatc taaatgatct acgagatcgg      1740
     attcttgatg aagcggcact tatacctaat gaatacatag aagatgctgt ttcaggtttt      1800
     tatcatcgat tagcgcattg tcaaacaatg aatggtgaac aatttgagca tttgatacat      1860
     taatcgcgct ttcaattgct agttttcctt tatgatcatc ttgccttagc tggctggata      1920
     cttctttgat cttgccttgg ctggctggat acttctttga tcttgccttg gctggctgga      1980
     tacttctttg atcttgcctt ggttggctgg acatcttatc ataaaaagct cgataacttc      2040
     gaaacggctt actcaaagta gaaaaaatta tagtgctttg aaaaggtctg aagaagggct      2100
     acaagaatat gcaataaaaa atagggggtc ccatttaaaa aattcaaggt gaccttgtcc      2160
     tgaccttggc gacgccaccc aaggtcaaac tcataatgtc agtaaataga tcttttgaaa      2220
     ccctacaatt tttatttgaa acattttttt tctaaaatgc ttagtttttg tgatatttca      2280
     ccgtcccggt actttttata caccctg                                          2307
//
ID   Mariner-69_LMi repbase;    DNA;    INV; 1336 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-69_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1336
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 65-65 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           87..1217
FT                 /product="Mariner-69_LMi_1p"
FT                 /translation="MKSASRTVCKHAHTTLRRSVLAWQPLRMELPLDVTAK
FT                 CELRAVIRFLNAKGTAPIEIHRQLTEVYGESCMDVKNVRKWCREFAAGRTE
FT                 IHDEQRSGRPSISEETVLKVEQSMREDRRITLDDLCTLVPEVSRSTAHRIL
FT                 TETLNYRKVCARWVPRMLTEDHMRQRVDASRAFLHRLAAEQDNFLDSIVTG
FT                 DETWAYHFTPETKQQSRQWRHPSSPKPRKFKQTQSAGKVMTTVFWDRKGVL
FT                 LVDFMPTGTTINADRYCETLKKLKRAIQNRRRGMLSKGVHILHDNARPHVA
FT                 RQTVALLQQFQWNIITHPPYSPDLAPSDYHLFPKLKEHLAGKRFSSDDEVK
FT                 EEVHNFLNSMAASWYDMGIQKTATASTKMHRQKW"
XX
SQ   Sequence 1336 BP; 376 A; 313 C; 338 G; 309 T; 0 other;
     cgagggtaat cccaaaagta aggtctccta ttttttatat tatataagta cagaactctg        60
     tttgtgtggc agttggtcac actgttatga agagtgcttc ccgcactgtg tgtaaacatg       120
     cgcacaccac gctgaggcgc tcagtcttgg cttggcagcc gttgagaatg gagctcccgt       180
     tggatgttac cgccaagtgc gaattgcgcg cagttattcg gtttttgaac gcaaagggca       240
     ctgcgccgat tgaaatccat cgccaattga cggaagtgta tggtgagtcg tgcatggatg       300
     tcaaaaatgt tcgtaagtgg tgtagagagt ttgcagctgg tcggactgaa attcacgacg       360
     aacaaaggag cgggagaccg tcaatttctg aggagacagt gttgaaggtt gagcaaagca       420
     tgcgtgaaga tcggcggatc accctggatg atctctgcac gttggttcct gaggtttccc       480
     gaagcaccgc tcacagaatt ttaacggaaa cattgaacta ccggaaggtg tgcgcaagat       540
     gggtgccacg catgctgact gaagaccaca tgcggcaacg agttgatgct tcccgcgcat       600
     ttcttcaccg ccttgcagcc gaacaggaca actttctgga ctcaattgtc acgggtgacg       660
     aaacctgggc ataccacttt acacctgaga ccaagcaaca atcacgccag tggcggcatc       720
     cttcttcgcc aaagccgcgg aaattcaaac aaacacagtc tgccggtaaa gtcatgacaa       780
     ccgtgttttg ggatcggaaa ggggtattgt tggtcgactt tatgcccact gggaccacaa       840
     ttaacgctga caggtactgt gagactctga aaaaactcaa acgggcaatt cagaaccgga       900
     gaagaggaat gttgagcaag ggcgtacaca ttctccatga caacgctcgc ccacacgtcg       960
     ctcggcaaac cgttgctctc ctgcaacagt ttcagtggaa catcatcacc cacccaccct      1020
     atagtcccga cttggcgccc agtgactatc acctgttccc taagttgaaa gaacatttgg      1080
     ccggaaagcg attcagctcc gacgacgagg tgaaagaaga ggttcataac tttctgaaca      1140
     gcatggcggc gagctggtat gacatgggca tacaaaaaac tgccacagcg tctacaaaaa      1200
     tgcatcgaca gaaatggtga ttatgtcgaa aaatagctaa atgttcaagc tgtaaactga      1260
     tgtaaaccat tgtagaaata aacaggtcta tgtacttata aaaaaatagg agaccttact      1320
     tttgggatta ccctcg                                                      1336
//
ID   Mariner-6N1_AEc repbase;    DNA;    INV; 133 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-6N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-133
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 548-548 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 133 BP; 46 A; 18 C; 20 G; 49 T; 0 other;
     ttaggtgttg gaattaattc gtagcgtttt acaagtgatg ggaagtactt tcattaatgt        60
     attttttaat gctcatgtga aataaataac attctttcat taaaaaacgc tacgaattaa       120
     ttccaacacc taa                                                          133
//
ID   Mariner-6N1_LMi repbase;    DNA;    INV; 696 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.11, Created)
DT   10-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   -6_LMi; Mariner-6N1_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-696
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2916-2916 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 696 BP; 203 A; 142 C; 135 G; 216 T; 0 other;
     cgaggcgcgt ccagaaagta agttccgttt ggttatataa aacgaacggg tacagataca        60
     gaaaaaatat tgattgtaca aaaatctaca actgttaaac tacttttcta catagcttcc       120
     gaaattttgt aggcaattgt catagcatgg cacaaggttt tgtgtgcctt tttcatagaa       180
     tgttgccgcc tgtgtattca accatgtggt aacatgttct ttcagctcgt catcatcgtt       240
     gaagtgttgt ccaccaagga cagattttag gtgtaagaag aggattactg tcaaaagatt       300
     tttttttcac gataatgcct gacctcacac accgaatgtg accaaacaat tcttacggaa       360
     atttcaatgg gacctgtttg atcatcctcc atacagctcg gacctctctc ctagcgactt       420
     tcatctcttc ttacacctaa aatctgtcct tggtggtcaa cacttcaacg atgataaaga       480
     gctgttacca catggttgaa tacacaggcg gcaaccttct gtgaaggatg catgcaaaaa       540
     cttgtggcac gctatgacaa gtgcctacaa aatttcggca gttatgtgga aaagtagttt       600
     aagagttgta gaattttgtg caataaaaat ttcttctgta tctgtgtaca atttcatttt       660
     attaccaaac ggaacttact ttctggacgc gcctcg                                 696
//
ID   Mariner-6N2_LMi repbase;    DNA;    INV; 695 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   27-OCT-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-6N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-695
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3008-3008 (2014).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus. Hairpin structure.
XX
SQ   Sequence 695 BP; 207 A; 147 C; 147 G; 194 T; 0 other;
     cgaggcgcat ccagaaagta agtttcccct attttttaag acatagttac atgaaaatct        60
     ttattggcaa caggtacagc aatgtttgag ctattttcca acatagtcac caaaagaatt       120
     gagacacttg tcatatcgtg ggatcagctt ttgcattcct gtgtcgtaga agtctgccgc       180
     ctgtgaatgg aaccagtgtg cgacagtcat cttcagctct ttgtcattgt caaacgctgg       240
     ctggaggaca ggaatttctt gaggtgcaag aaaagatgga aatcgctggg agtaagatca       300
     ggactgtatg ctggatgatc aaacagctcc cagccgaact tctgcaaaac agtaactgtg       360
     caccaagctg tatggggatg agcactgtca tggaacagca caacacctgc agtaagcatt       420
     ccacttttct tgcaccttaa gaaattcctg tcctctggac gacaacaaag actgaagatg       480
     actgtcacac gctggttcca ttcacaagtg gcagacttct acaacacagg aatacaaaag       540
     ttgatccaac gatatgacaa gtgtctcaat tcttttagtg actatgtcga aaagtagctc       600
     aaacattgct gtacctgtta ccaataaagt ttttcatgta actatgttgt ctttgtttta       660
     aaaataatag gaacttactt tctgggtgca cctcg                                  695
//
ID   Mariner-6_ACe repbase;    DNA;    INV; 1266 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1266
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 515-515 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           448..1140
FT                 /product="Mariner-6_ACe_1p"
FT                 /translation="MRKGQFMSARTREQRFIRAQRLLSKLKHSEISDMLWF
FT                 YSDEKNFDQDQKVNRRNDRWLCADPSEVPHVMHTKFPATVMVLGVVSNEGH
FT                 VMPPHFFPQGLRVNAAAYIAVLEAVVKPWIDSVRGERPYVFQQDSAPSHKA
FT                 TTTQDWMSENLHDHITPNMWPPSSPDLNPLDYYVWGVVERETNKHPHNTLD
FT                 SLRATITRVMTHMDKDPLIRACKRFRQRIEAVIAAEGDFIE"
XX
SQ   Sequence 1266 BP; 380 A; 276 C; 263 G; 347 T; 0 other;
     cagggtgcgt caggtatttg aggacactca catatgtgct tgtcacttcg cagcaatata        60
     tttttctttc ttttttcctt tcagatcata aatggaggac aataagctaa ctcatgaaat       120
     gaaaagacac gctgttatca tcgctataca cgcgaatcac agcgatcttg aaatctccat       180
     atttttgaat ctcttgcccg atcgtttgtt cacaaagttc gtcgagagtt agaagtatct       240
     gatgacaatg tggaaagtgt tgccaagcgc aaaaaacata aagcacgttc agacacagtt       300
     agaacatcac agtttgtgca gcaagtccag ggcattattg atgaagaccc ttcaaagtcc       360
     ataagggcca tatcgagaga tcttcagatt tctgagtgca caatccgtcg cattgtccac       420
     gaagacatcc ggtacaagtc atacgtgatg cgcaaaggtc agtttatgtc tgcacgcact       480
     cgagaacagc gattcatccg ggcacaacga cttctaagca agttaaaaca ttctgaaatc       540
     tcggatatgc tctggtttta ttctgacgaa aaaaattttg accaggatca aaaagtaaac       600
     cgacgaaatg ataggtggct atgtgctgat ccttcagaag ttcctcatgt tatgcacaca       660
     aagtttccgg caactgtcat ggttttggga gtggtgagca atgaaggaca cgtcatgcca       720
     ccccacttct ttcctcaagg acttcgggtg aatgctgctg cctacattgc ggttttggaa       780
     gcagttgtga aaccctggat agatagcgtg cgtggtgaaa ggccatacgt attccaacag       840
     gactctgctc cttcacataa agccacgacg acgcaagatt ggatgtccga gaatctgcat       900
     gatcacataa ccccaaacat gtggccacct agctcccctg atcttaatcc tttagattac       960
     tatgtatggg gcgttgtaga acgggagacc aataaacatc cccataacac gcttgattcc      1020
     ctcagagcaa ctattaccag agtaatgacg catatggaca aggatccttt gattcgagca      1080
     tgcaaacgtt ttcggcagag aattgaagct gttattgctg ctgaaggcga ttttatcgaa      1140
     taactgtata gcctacgagt tacttacttt gctgtaaaaa attcaataaa atacaataag      1200
     ttttctaaga aatatacaaa ttttagtttt atagtcaata tgtcctcaaa tacctgacgc      1260
     accctg                                                                 1266
//
ID   Mariner-6_AEc repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1290
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 549-549 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1208
FT                 /product="Mariner-6_AEc_1p"
FT                 /translation="MSKFVPDKVFLRGVLLHYFNMNKSAAEAHRILVDVYS
FT                 EHALAEQTCRKWFARFKAGDFDLDDKERPGQPKKFEDNDLQALLNENSCQT
FT                 LKELSTSLEVDFSTIGKRLKSLGMIQKEGHWVPYELKPRDIERRFLTCELL
FT                 LQRQKRKGFLHRIVTGDEKWIHYDNPKRRKSWVKPGEPSTSVAKPNIHGSK
FT                 LLLCIWWDQKGVIYYELLKPHETVTGDLYRRQLMRLSRALKQKRSEYFERH
FT                 DKVILLHDNARPHVAKPVKTYLETLKWEVLPHPPYSPDIAPSDYHLFRSLA
FT                 HSLCEQKFTSYEDCTKWFDSWISSKDEQFFRRGIHSLPERWSKVVESDGKY
FT                 FH"
XX
SQ   Sequence 1290 BP; 407 A; 251 C; 273 G; 358 T; 1 other;
     tattaggtgt tggaattaat tcgtagcgtt ttacaagaga tggcacaagc agtacactat        60
     ttcgttgtta cctatagttc tgtatacatt gtaaacatct atcataggac gtcatttgcc       120
     gtacataacc tttcttgaaa tcataaataa caatactgta taattcattg aatatgtcaa       180
     aatttgtgcc agataaagtg tttttgcggg gagttttgct tcattacttt aatatgaaca       240
     aaagtgcagc tgaagctcat cgtattttag tggatgtgta tagtgaacat gctctggctg       300
     agcaaacgtg taggaagtgg tttgcacgkt ttaaagctgg tgatttcgac ttggatgaca       360
     aggagcgacc tggtcagccg aaaaaatttg aagataacga tttgcaggca ctgctcaatg       420
     aaaactcatg tcaaacactt aaagaattat ctacgtcatt ggaagttgac ttctcaacaa       480
     taggaaaacg tcttaaaagt ttgggcatga tccagaagga aggacattgg gtcccatatg       540
     aattgaaacc aagggatatt gagagacgtt ttctcacgtg cgaactgctg cttcaacggc       600
     agaaaagaaa aggttttttg catcggattg ttaccggtga cgaaaagtgg atccattatg       660
     acaatccaaa gcgcagaaag tcatgggtta agcccggcga accatcaaca tcagtggcaa       720
     agcccaatat ccatggctca aagctcctgc tctgtatttg gtgggatcag aagggtgtca       780
     tatactacga actgctaaaa ccgcatgaaa ccgttactgg agatctctac cgacggcaac       840
     tgatgcgctt gagccgtgca ttgaagcaaa aacggtcgga atacttcgaa agacacgata       900
     aagtcatctt gctgcacgac aatgctcgcc cacacgttgc aaaaccggta aaaacatacc       960
     tggaaacact taaatgggaa gtgctaccgc acccgccgta ttctcctgat attgcaccta      1020
     gcgactacca cttgtttcga tcattagctc atagcttgtg cgagcagaag ttcacatctt      1080
     acgaagattg tacaaaatgg ttcgattcct ggatttcatc taaagatgaa cagttcttcc      1140
     gacgcggtat tcattcactg cccgaaagat ggtcaaaagt agtagaaagt gatgggaagt      1200
     actttcatta atgtattttt taatgctcat gtgaaataaa taacattctt tcatttaaaa      1260
     aacgctacga attaattcca acacctaata                                       1290
//
ID   Mariner-6_BM repbase;    DNA;    INV; 1264 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   28-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1264
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 941-941 (2010).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..827
FT                 /product="Mariner-6_BM_1p"
FT                 /translation="MLKFEPNKRHLRELLIYFFNLKKSAAEAHRLLVKAYN
FT                 EAALSERTCREWFKKFKNGDFDVEDKDRSGRPKIYEDAELTELLEEDSSQT
FT                 QKELALTLEVTQQAVSHRLKSLGMIHKQGNWVPYELKPRDVERRLCMSEML
FT                 LARHQKKVFYIESSLAMKSGYITIIQKEENHGDYPATRQHPQQNRIFMEKS
FT                 SCCVFGGISWVWCITSCLIRAKQSLELSTERN"
XX
SQ   Sequence 1264 BP; 416 A; 238 C; 269 G; 339 T; 2 other;
     caaataagtt tccgccgttt tgagaaagat ggtgtggcac gaggtttacg ttcgaattca        60
     cagatgataa tcggcttgaa aattaagttg atcatttaag aacaacttaa ccctatcata       120
     ttattaactc cgtattagca tcatattttt tttatccaaa aatgttaaaa tttgaaccaa       180
     ataagcgtca tttgcgggaa cttttaattt acttttttaa tttaaaaaaa tctgcagccg       240
     aggcgcatcg attgctcgta aaagcatata atgaggctgc cttgagtgag agaacatgtc       300
     gtgagtggtt taaaaagttt aaaaacggtg attttgacgt agaagacaaa gatcgcagtg       360
     gaaggccaaa aatttatgag gatgcagaat tgacggaatt attggaggaa gattcgtctc       420
     aaacacaaaa agaacttgca cttactttag aagtcactca gcaagcagtc tcacatcgtt       480
     taaaatcgtt aggaatgatt cataaacaag gtaattgggt tccatacgaa ttaaagccga       540
     gagatgttga acgccgatta tgcatgagtg aaatgctgct agctaggcac caaaaaaaag       600
     ttttttacat cgaatcgtca ctggcgatga aaagtggata cattacgata atccaaaaag       660
     aagaaaatca tggggactac ccggccacgc gtcaacatcc acagcaaaac cgaatattca       720
     tggaaaaaag ctcatgctgt gtatttggtg ggatcagctg ggtgtggtgt attacgagct       780
     gcttaatccg ggcgaaacaa tcactggagc tctctaccga acgcaattga tgagattgag       840
     tcgagctctg aaggaaaaac gccctcaata ctactccaga cacgacaaaa ttattctgct       900
     ncatgacaac gctcgtccgc atgtagcggt accggtgaaa anttacttaa aaacgcttaa       960
     ttgggaagta ctacctcacc cgccgtattc accagacatt gccccgtctg actatcatct      1020
     gttccggtcg atggcacatg ctctgtcgga gcagcggttt acatcatatg aagataccaa      1080
     aaattgggtt gattcgtgga tagcctcaaa agacgaggag ttcttcagac gcggaatccg      1140
     aactctgcct gagagatggg aaaaagtagc tgctagtgat ggacaatact tcgattaaat      1200
     ttaaattacc gttctttcat aataaatatt attttttcga caaaaaacgg cggaaactta      1260
     tttg                                                                   1264
//
ID   Mariner-6_CFl repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   29-MAR-2012 (Rel. 19.04, Created)
DT   29-MAR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 806-806 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1211
FT                 /product="Mariner-6_CFl_1p"
FT                 /translation="MEGNNVFFRCIMLFYFRKGKNATQTRKKICAVYGEDA
FT                 VSDRMCQKWFAKFRSGEMNIEDAPRSGRPVTTDVDQITALIDSERQITVRE
FT                 IAARLNIGKSTVSEHLNKLQMVKKLDVWVPHDLTEKNRIDRISISDLLYKR
FT                 NEYDSFLKRIITGDEKWIIYNNVERKRSWSKRGEPPLTTSKAGLHPKKVML
FT                 CIWWNWKGIVYYELLPDNETIDSDKYCSQLDKLKIEIAKKCPELINRKGVV
FT                 FHHDNARPHASLQTRQKLLAFGWDVLPHPPYSPDIAPSDFHLFRSLQNSIN
FT                 GLNFASLQLLKNYLDSFFAEKTQDFYERGIMKLPERWKSIVQNNGAYITE"
XX
SQ   Sequence 1288 BP; 412 A; 244 C; 268 G; 364 T; 0 other;
     ttgggttgtc cggaaagttc gtgcggattt ctcaatagat gtcgttcaaa ggcgaatttt        60
     acaagtttat gtcgatgtga tatgtcaaat gctttcgtgt tttgattagt gacatttcaa       120
     cgcatactta gtgatattaa ttatcccaat aaattaaaaa ctttttactt gacattagtt       180
     tagagatgga aggaaataac gtgttttttc gatgcataat gcttttttat ttccgtaaag       240
     gaaagaacgc gacacaaact cgaaaaaaaa tatgtgccgt atacggggaa gatgccgtaa       300
     gtgatcgcat gtgtcagaag tggtttgcta aatttcgttc aggagaaatg aatattgaag       360
     atgctcctcg ctctggtcgg ccagtcacca ctgatgtcga ccaaataaca gctttaatcg       420
     attccgagcg gcagatcaca gttcgggaaa tcgcagcgag gttaaacatt ggcaaatcaa       480
     ctgtttccga acatttaaac aagctccaga tggtaaaaaa gcttgatgtt tgggtgccgc       540
     acgacttaac tgagaaaaat cgtattgacc gcatttccat cagcgatttg ctatacaaac       600
     gcaatgaata cgattcattt ttaaaacgca tcataacagg cgacgaaaag tggataattt       660
     ataataatgt cgagcgtaaa aggtcgtgga gcaagcgagg tgaaccgcca ttaaccactt       720
     cgaaggcagg cttacatccg aaaaaggtaa tgctctgcat ttggtggaat tggaagggga       780
     tagtatatta tgagctacta ccggacaacg aaaccatcga ttcggacaag tactgttcac       840
     agttggataa attgaagata gaaatcgcca aaaagtgtcc ggaattgatc aataggaaag       900
     gcgtcgtttt tcatcatgat aacgccagac ctcatgcaag tttgcagact cgccaaaaat       960
     tattggcgtt tggctgggat gttttgcctc atccaccgta ttcccccgac attgcaccct      1020
     cggattttca tttatttcgg tcgctacaaa actcaattaa tggtttgaac tttgcttctt      1080
     tgcaactcct caaaaactac ttggacagct tcttcgccga aaaaacccaa gacttctatg      1140
     agagaggaat tatgaaatta cccgaaagat ggaaaagtat tgtgcaaaat aatggtgcat      1200
     atatcacaga atgaaataac ttttaacaac aaaatttttt cattcgaatt ttgcttaaaa      1260
     atccgcacgg actttccgga caacccaa                                         1288
//
ID   Mariner-6_DAn repbase;    DNA;    INV; 1733 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1733
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 262-262 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 256-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           379..1398
FT                 /product="Mariner-6_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MPKSRELTLELRAEIVTKLKAGISAAEITKLYKISRR
FT                 NVYYLVKKIXXAGTLKNKKRSGRKPVLDQRQCRHLLGVVASNPSASPVKIA
FT                 QESKNTIGKQISDSTIRRRLKEADFNTYVARKVIDITPTNRTIRLQFALEY
FT                 IKKPLDYWFNVLWTDEAAFQYQGSYSHHFMHLKKNQKHLAAQPINRFGGGT
FT                 VMFWGCLSYYGFGDLVPIEGXLNQIGYVRILNDHAFMSGNRLFPTYEWILQ
FT                 QDNAPCHKGRIPTKFLNDLNRSVLPWPPQSPDLNIIENVWAFIKNQRTIDK
FT                 NRKRDGVIAEIDEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKYY"
XX
SQ   Sequence 1733 BP; 587 A; 315 C; 314 G; 512 T; 5 other;
     caaccatagt caaaattatt ttcacaacac acaattattt gcacatccca acttctttta        60
     gttgttattc ttgttgttgt tgaacgattt cactgaaaca aatgttatcg cgtagcttga       120
     tcctcgctga agggacacaa aaagaaatgg gaaagataga ggttcatagg acaaatctaa       180
     aagcaaaaga aaaaaagctt atcagttgtc agaagtattt gcacacgttt tcggtgcgtc       240
     aaaattattt tcacaatgca atttcgtcat tagtatttgg ttttcagcga caagtggcgg       300
     ttcgtttgct ctaataaatt caattcggtg aaaattcaat aaaaataata atttatcttt       360
     tacatttgtc taaacaaaat gcctaaatca agggagttaa cccttgagct ccgggctgaa       420
     attgttacta agcttaaagc cggtatttca gcagctgaaa tcactaaatt gtataaaatt       480
     tcgcgcagaa atgtctacta cttagtaaaa aagatagawg magctggcac tttaaaaaat       540
     aagaaaagat caggccgaaa acctgtgttg gaccaaagac aatgcaggca cttactagga       600
     gttgtagcga gcaatccaag tgcaagtcca gtaaaaattg cccaagaatc aaaaaataca       660
     attggtaaac aaataagtga ttctacaatt cgtcgcaggc taaaagaagc tgatttcaat       720
     acatatgttg cccgcaaagt gattgacatc acaccaacca accgaacaat acgcctgcaa       780
     tttgcattgg agtatattaa gaagcctctt gactattggt ttaatgtttt atggacggat       840
     gaggctgcat ttcagtacca ggggtcctac agccatcatt ttatgcattt gaagaaaaac       900
     caaaagcatt tggcagccca gccaatcaat aggtttggtg gtggcacagt catgttctgg       960
     ggatgccttt cctattatgg attcggagac ctcgtaccga tagaaggawc tttaaaccag      1020
     atcggatacg ttcgaatcct taatgaccat gcttttatgt caggaaatag actttttcct      1080
     acttatgaat ggattcttca gcaggacaat gctccatgcc acaagggtag gataccsacc      1140
     aaatttttga acgaccttaa tcggtcggtt cttccttggc ccccacaaag cccagaccta      1200
     aatatcatcg aaaacgtttg ggcttttata aaaaatcaaa gaaccattga taaaaatcga      1260
     aaacgcgacg gagtcatcgc tgaaattgac gaaatttggt ccaaattgac ccttgaattt      1320
     gcccaaactt tggtaaggtc aatacctaaa agactacaag ctgtcattga tgccaaaggt      1380
     ggtgtaacta aatattatta atgtattttg ataaaattaa gaaaatcttt tgttaaaatt      1440
     agatattata ttaagctgaa mtaaatcaaa ctaacttttg tgaatataat tttgacgcac      1500
     cgaaaacgcg tgcaaatact tctgacaact gataatcttt ttttcttttg cttttagatt      1560
     tttcctatga acctctatct ttcccatttc tttttgtgtc ccttcagcaa ggatcaagct      1620
     acgcaataac atttgtttca gtgaaatcgt tcaacaacaa caagaataac aaataaaaga      1680
     agttgggatg tgcaaataat tgtgtgttgt gaaaataatt atgactaggg ttg             1733
//
ID   Mariner-6_DBi repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-6_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1637
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 741-741 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 28-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(87..341,331..588,549..1364)
FT                 /product="Mariner-6_DBi_1p"
FT                 /translation="MRRKAKNLFLAMCMPNFISFTFCILFLLIRMHADNGF
FT                 LRGISILTASLWKYFLTFKHATIKELLCLTLSNIKRCYLNKKLLRIIKELL
FT                 NNMGKTAELSLVTRSLMVAKFNAGIAVKDIADEFKVSRQTVHYQIKKFKKH
FT                 NDLRNLRRSGPKRKTDLSEDRVLVRELKKIFFRPSSCTGIKKNIFLKPQSA
FT                 ADQFNLTAKTPISERTVRRRLKESDFKTYKVKEVPYITNANKLKRLAFAKE
FT                 YVQKPKEFWRSVLWTDESSFEYNSSKNKFVVRLPMEQRQKRRPVCQKVSHG
FT                 GGCVMFWGCVAYNGLGDFVPVTGSMNQGQYLRILNDNAFTSGDRLIGQSFI
FT                 LQQDNAPCHKAKMITSFLKDVGVTTLDWPPQSPDLNIIEXVWSLIKRKRTV
FT                 SLNKTREETISEVSSLWEQISPEIIQNLIDSVPGRLEKVIKTEGNYIFY"
XX
SQ   Sequence 1637 BP; 563 A; 282 C; 299 G; 492 T; 1 other;
     cactagtcgg cataaatatt ttgacgaacc ctacttttga ctatcagact ttgctatcct        60
     taataccgtt aaatagaggt gccaaaatga ggcgcaaagc aaagaatcta tttttagcta       120
     tgtgcatgcc aaattttatt tcgtttacct tttgcattct ctttctactg ataagaatgc       180
     atgcagacaa tggctttttg cgtggcataa gtattttgac agcatcgtta tggaaatatt       240
     ttctcacatt taagcacgcg acaattaaag aacttctgtg tttaactttg agcaatatta       300
     aacgttgtta tttaaataaa aagttattaa gaattattaa ataacatggg taaaactgct       360
     gaactaagtt tggttaccag atccttaatg gtagcaaagt ttaacgctgg aatagcagtc       420
     aaagacattg ccgatgagtt taaggtgtcg cgccaaactg tgcactacca aattaaaaaa       480
     tttaaaaagc ataatgacct gcgtaattta agaagatcag gtccaaagcg caaaacagat       540
     cttagtgaag accgagttct tgtacgggaa ttaaaaaaaa tatttttcta aagccccaat       600
     ccgcagcaga tcaatttaat ttgacagcta aaacaccaat tagtgagcgc acagtccgtc       660
     gacgtttaaa agaaagtgat ttcaagactt ataaagtcaa ggaagtacca tacataacaa       720
     atgcaaacaa gctcaaaaga ctggctttcg caaaggaata tgtccaaaag ccaaaggagt       780
     tctggaggag cgttctatgg acagatgaaa gctcctttga gtataactca tcaaaaaata       840
     agtttgttgt aagattacca atggaacaaa ggcagaaaag gcggcccgtt tgccaaaaag       900
     taagccatgg tggaggctgt gtgatgttct ggggatgtgt tgcgtataat ggactgggtg       960
     acttcgttcc tgtcactggc tcgatgaacc aaggccaata tttacggatt ctaaatgata      1020
     acgcatttac ttctggagac aggcttattg gtcaatcctt cattctgcaa caggataacg      1080
     ccccatgcca caaagccaag atgattacat catttttgaa ggatgttggt gttaccactt      1140
     tggactggcc acctcaaagt ccagatttaa atataattga aawcgtctgg tctcttatta      1200
     aacgtaaaag aacagtatcg ttgaataaaa ccagagagga gacaatttct gaggtcagtt      1260
     ccctttggga acagatatct ccagagatca tccaaaattt aatcgattca gtaccgggac      1320
     gcctggaaaa agttattaaa actgaaggaa attatatatt ttactaaatt cctatttttt      1380
     ccttagtttt tttgagttta aactttgtta ctcacattaa aaggtacttg tcaaaatact      1440
     tatgccacga cataaaaatt actttagctt atatttttgc aagttcatat gacaaaatgt      1500
     tgaattcatt atttttaagt ttatattagc actaagtaat acagaaaaaa aaatcattga      1560
     gttatattaa accattgcaa agttacatac aaactagaac catttgtttt tcgtcaaaat      1620
     aattatgccg actagtg                                                     1637
//
ID   Mariner-6_DBp repbase;    DNA;    INV; 1679 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1679
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 589-589 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. ~80-bp TIRs. The consensus
CC   is ~94% identical to that of Mariner-14_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1679 BP; 589 A; 270 C; 330 G; 488 T; 2 other;
     cagtcagcgc cacaaaaaaa gccgcactta aaaaaatttg aaaattgtgc aatcactatg        60
     ctggggtttc cctaaatttt attctttgga cattattttt ttaggggggt tacccttgac       120
     tattttcgac ataatttcgt cctttgaaga gcgctgttgc ttaagttgct tttggtagaa       180
     ttttttttgt aaagacacct gtaaaatcat gccaaagcaa aagcagttca ctgatcgcaa       240
     taaagaaaaa attattttat tggcggaaca aaatgtgtca aatcggcaaa tatcggctga       300
     aacacatttc aatgaaagcc cagtgcgtcg ctttttaaaa aaatatcgtg agacaggtaa       360
     agtaaaaagg aagaaggaac aggtaacaaa aaatgcacca cgtcacgaga agatcgcttt       420
     attatgagga cgagcctgca ggatcgtttc aaaactgcag tgcagataag atcwgaggtt       480
     caggaacagt tttcaaaaga tatttcggag cgaactgttc aacgtcggct taactccatg       540
     ggaatgctcg caagatcacc tgcaaaaaag ccacttttga atccgcgaat gaaaaaaaat       600
     cgtctaaact gggccaagga caaggaaaat tggactgctt ctgattggtc aagagtgcta       660
     ttttcagatg agtccaaatt taatctcatt ggatctgatg gaatcctcaa ggtgcgccgt       720
     agacgtgggg aacgctattc tgaaaattgc tgcatagcca cagtaaagca ttcaccgtat       780
     gttatggtat ggggatgcat atccaaatat aaaacggaat caattttaat ggttcagggt       840
     atggtcaatg cagaaaaata caaagaaata attttaagtg gagttgtgcc tagcattgag       900
     tccataagtg aagaagaaca ggaactcatt tgtcgggatg attctgcacc ttgccatcga       960
     gcgcgatctg tgagttactc agtgtccgat tgttatcaaa acaacttatt cagataaatt      1020
     tatcattttt ctatctaaag ataacaaatt tgaaggaaga attgggcatt aagtccttag      1080
     attggccagg aaacagccca gaccttaatc caatcgagaa tgtttgggcc tatatgggtg      1140
     ccaaaataag aaagcgaaag cccaaaacta tggaggattt aaaacaagtt atagaaaaag      1200
     tatggataca cgatataacg aaggaatatt tktgttccat ttacgattct atgcccaata      1260
     gggtaaaatc tgtaattaag gccaaaggcg gaattactaa gtattaagct aaattaaaaa      1320
     aatatgtcta ttgttaaatt gcctagattt aaattttttt tatagttagt acggtattca      1380
     attggaaata aatagttttt gttgaatttt ttcattatta taacttttat gaattttttc      1440
     cttaagagtg ccataatagt gaaaagtcgt taaaactagg gtgaaaccaa aaaacaacat      1500
     ttttttaata ttaaaaacaa acttaaacta aaaattggta tgcactttta ttaacatacc      1560
     atcagttaac ttattaaaaa aaagttgggc gaattcgcaa tcatataaag aaaccacagg      1620
     ccctgaaagt tagaaattcg taaaccttca aagtgcggct ttttttgtgg cgctgactg       1679
//
ID   Mariner-6_DEl repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   21-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-332
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 418-418 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Fragment. ~95% identical to
CC   Mariner-3_DF.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 332 BP; 102 A; 70 C; 67 G; 93 T; 0 other;
     aaggtaaaaa actccataaa taccatcgaa caacctccgt attcgccaga tttagccccg        60
     tgcgacttct ttttgtttcc tcgactcaag ttgccgctcc gtggaacccg ttttagcacc       120
     attgaagaca tcaaacaaaa ttcggcacgg gagttgaagg ctatcccgga aaacgcctat       180
     aaaaaatgtt ttgaagactg gcagaatcgc tggcatatgt gtattgcctc taatggggac       240
     tactttgaag gcgacaaaat aaatttgaat tattaaatgg aaaatgtgtg ttttattaac       300
     ccagtcccgg tacttttttg acagaaggta ta                                     332
//
ID   Mariner-6_DF repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1296
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 773-773 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1225
FT                 /product="Mariner-6_DF_1p"
FT                 /translation="MEKKEFRVLIKYCFLKGKNTVEAKVWLDKEFPGSAPG
FT                 KSTIIDWYAKFKRGEMSTEDGERSGRPKEAVTDENIKKIHRMILNDRKMKL
FT                 SEIADIVKISKERVHHIIREYLGMRKLCAKWVPRELTIDQKQQRVDDSEQC
FT                 LEMFKRNKAEFFRRYVTMDETWLHHYTPESNRQSSEWTASDEPNPKRGKTQ
FT                 QSAGKVMASVFWDAHGIIFIDYLQKGQTINSDYYIALLERLKAEIAKKRPH
FT                 LKRKKVLFHQDNAPCHKSGKTMAKIYELGYELLPHPPYSPDLAPSDYFLFA
FT                 DLKRMLAGKKFKTDDEVIAETEAYFEDKPKEYYKSGIEKLENRYNRCIALE
FT                 GNYVE"
XX
SQ   Sequence 1296 BP; 431 A; 243 C; 292 G; 330 T; 0 other;
     taacaggccg gatgaaaagt ccccggtctg acccatacta gattttacta gatttttttc        60
     catatgattt tcattcagta ccaaccttca aacgatacgt gtcaaaattt gacagcaatc       120
     ggacaattag ttcgggagtt atatcgattt gagtgaagct acttttgtta ttgttgaaaa       180
     gatggaaaaa aaagaatttc gtgtgttaat aaagtattgc tttttgaaag gaaaaaatac       240
     agttgaagcc aaagtgtggc ttgataaaga gtttccgggg tctgcaccag gaaaatcaac       300
     catcattgat tggtatgcta agtttaaacg tggtgaaatg agcactgaag acggtgaacg       360
     cagtggacgc ccaaaagagg ctgttaccga cgaaaacatc aaaaaaatcc atagaatgat       420
     tttgaatgac cgtaaaatga agttgagcga gatagcagac attgtaaaga tatcaaagga       480
     acgtgtacat catatcattc gcgaatattt gggcatgcga aagctctgtg cgaagtgggt       540
     gccgcgcgag ctcacaatcg atcaaaaaca acaacgagtt gatgattcgg agcagtgttt       600
     ggagatgttt aagcgcaata aagccgaatt tttccgtcga tatgtgacaa tggatgaaac       660
     atggctccat cactacactc cagagtccaa tcgtcaatca tctgaatgga cagcaagcga       720
     cgaacccaat ccaaagcgtg gaaaaacgca acagtcggct ggaaaggtta tggcgtctgt       780
     tttttgggat gcgcatggaa taatattcat cgactatctc cagaagggac agacaatcaa       840
     cagcgactat tacattgctt tattggagcg gttgaaagcc gaaatcgcaa agaaacggcc       900
     gcatttgaag aggaaaaaag tgctgttcca ccaagacaat gcaccatgtc acaagtctgg       960
     aaaaacgatg gctaaaattt atgaattggg ctacgaattg cttcctcatc caccgtattc      1020
     tccagatctg gcccccagcg actatttcct gtttgcggac cttaaaagaa tgctcgctgg      1080
     caagaaattt aagaccgatg atgaagtgat tgctgaaact gaggcctatt ttgaggataa      1140
     accgaaagag tactacaaaa gtggcatcga aaagttggaa aatcgctata atcgctgtat      1200
     cgccctcgaa ggcaactatg ttgaataata aaattgaatt ttgcaaaaaa aaatttttta      1260
     ctatggtaaa ccggggactt ttcatccggc ccgtta                                1296
//
ID   Mariner-6_DK repbase;    DNA;    INV; 1569 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1569
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1199-1199 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 28-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1569 BP; 533 A; 261 C; 257 G; 518 T; 0 other;
     caatcgtgga cataagtatt ttgacacagc tgttagctat attccagcgc gtgtatctta        60
     gtactcgtaa aagttacggg atccatttaa ctttgcagta agagattcta tttaaaactt       120
     taagagagca aaatatgaca ctgataagta aattaacttc tttgctatgt cacgtgatgt       180
     gagagatcat gcatttttgg gtggacaaaa atattttgac attgcattca tttagttctc       240
     atttgtttcg tgtgcattaa aaacagttta ttgttattta taactcaggc ttattaatct       300
     gttagcagct ttaatacatt tttgtcaatt ttcctaattt ctgtaccgtt atttaatgaa       360
     aatatgggta aaacacggga gctaagccaa atccagcgaa acgaaatagt aattaagtac       420
     cactcaggta tttcggtcca gaacctcagc atattttata aagtaccccg acaaaccatt       480
     tactatcaaa ttaacaaata taaacagaca aaagggcgac cacgcaagac ttcgcctaaa       540
     caagatcgtc taattctttc aaaatttaaa gataatgacc ttattatacc aaatccagct       600
     tccatggaag ttcaaaacga ttatgatttt taaattagta gaaaaacagt tgaaagaaga       660
     cttaaaaagg ctaactttgc tacttatgtg gcccgtcaga tacctttcat ttcacttaaa       720
     aatgagttga aacgattagc ctttgccaaa tccttttgag aacaaatgtt gtggaccgat       780
     gagagttctt ttgagtacca tggttcaaaa aataaaattt actgcagatt accaaaaaat       840
     attcgcaaga aagtggtacc tctcattcaa cgtataccac atggtggcgg cagtgtcatg       900
     ttttggggat gtttctgctt taacggtatc ggttatttgg tccccatcaa tgggacgatg       960
     aatttgcata tcctgattga ccacgaattt cttaccggcg acagacttaa caggcaagac      1020
     tttatcctgc agcaggataa tgttccatgc cacaaagcaa aaatgataac aacatttttc      1080
     agggactttg aagtaaaatc tttagattgg ccacccaaaa gtcccgatct caaaacgtat      1140
     gagggtccaa acttaacaag aacttgagag gagacaattt attaagtcga aggactatgg      1200
     aaggaaattt accttgaaac gcttcaaaat ttagtcaaat ctgctccaac acgattacaa      1260
     aaggtagtag atgccagaga agggattatt ttttactaat ttctactcat tattaacatt      1320
     ttttgcaatt cagattaaat ttctaacaaa ttaggttatg tcaaaataca tttggcctcc      1380
     cactttaatg aatttgtatt tttagtttat aagatgtaat ataaaatgta atatttttgt      1440
     tgttttttat tgtcttatta cactattgtt ataaataaat ttcattgatc ttttttggat      1500
     aaataaatta aagtttacaa cacaaaatgt gaatttttat ttatgtcaaa atacttatgt      1560
     ccacgattg                                                              1569
//
ID   Mariner-6_DRh repbase;    DNA;    INV; 1722 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1722
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1400-1400 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. ~230-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           130..1425
FT                 /product="Mariner-6_DRh_1p"
FT                 /note="transposase."
FT                 /translation="MSMYKNKNITTQGKICKQQNMSLHIFDTVKKLFTHLS
FT                 FRFCFVLIQEKTVLYRCLCFCTMRYVFISFHLIAKSFCTSVKKLILKLFNM
FT                 PGARLTFEVTQLIYYNHQLGKSVAELVEMFRVSRKTIYNVLNRAEKEDRLE
FT                 AKCGSGRKKKIDERADRLIMRKVRQNPQISTRTLAKELEEECGTVVSHETV
FT                 RQLILRNKYSSRVARKKPLLSKINVEKRLTFAVNMSIQPDNYWDDVIFCDE
FT                 TKIMLYYNDGPTRVWRKPLTALDQRNIIPTVKFGKLSVMVWGCISSKGVGE
FT                 LAFIENTMNAEQYLSILKTNLRQSADKLGLIVDNKPKFKFYQDNDPKHKEL
FT                 TVRTWLLYNCQKVIDTPPQSPDMNPIENLWVYLKKKVAKRQPKNRAALKAA
FT                 VLEEWHKIPLEYDLQKLVSSMKNRTRLVVKAKGGHTKY"
XX
SQ   Sequence 1722 BP; 578 A; 294 C; 332 G; 516 T; 2 other;
     cagtatgtca agaaactctt tacacactga aaaaataaca tattttttga ctttgcatgc        60
     aaaaataagg cctttcgttt agttttttca atattttttt aatgcagaac tatttatagg       120
     aaatttttaa tgagtatgta caaaaataaa aacataacaa cgcaagggaa aatttgtaag       180
     caacaaaata tgagtttaca catttttgac actgtcaaga aactctttac acatcttagt       240
     tttcgattct gttttgttct tattcaagaa aaaacggtac tttaccgttg tttatgcttc       300
     tgcactatgc gctatgtttt catttctttt catttaattg cgaaatcttt ctgcacaagt       360
     gtcaaaaagc taattttaaa attatttaac atgcctggag ccagattgac ctttgaagtt       420
     acccaattga tatattataa tcaccaattg ggaaaatctg tagctgagct agtggagatg       480
     tttcgtgtgt cgcgaaaaac aatttataat gttttaaatc gtgccgaaaa ggaagacaga       540
     ctggaagcaa agtgtggaag tggtcgaaaa aagaagattg acgagcgggc agaccgcctt       600
     atcatgcgta aggtccgtca aaacccccaa atttcgacca gaacccttgc taaggagttg       660
     gaagaagagt gtggcacggt cgtttcacat gaaacagtcc gccaactaat tctgcggaac       720
     aaatactctt cgagagttgc gcgtaagaag ccgctgcttt caaaaataaa tgttgaaaag       780
     cgcctaactt ttgctgtcaa catgagcatt cagccggaca actattggga tgacgtcata       840
     ttctgtgacg aaaccaaaat aatgctgtat tacaatgatg gaccaactag ggtatggcgc       900
     aagccgctta cagcwttaga tcagcgcaac atcattccaa cagtaaaatt tggcaaattg       960
     tcggtgatgg tttggggatg cataagcagc aagggagtgg gagagcttgc gtttattgaa      1020
     aatacaatga atgctgagca atatctctcc attctcaaaa caaatttgag gcaaagtgcg      1080
     gacaaacttg ggcttattgt cgataataag ccaaaattca aattttacca agacaatgac      1140
     cccaaacata aggagctcac tgtacgaacg tggctccttt ataattgcca aaaggtgata      1200
     gatacacctc ctcagagccc cgacatgaac cccattgaaa atttgtgggt ttatctgaag      1260
     aaaaaagtgg caaaaaggca gcccaaaaac cgcgccgcct taaaagcggc agtactggaa      1320
     gagtggcata aaattccgtt ggaatatgac ctacaaaagt tggtcagttc gatgaaaaat      1380
     cgtactaggc tagtagtcaa agctaagggg ggtcatacta aatattaaaa ttagtttaag      1440
     atagtataag ttgttaaata tattcattaa actgtagttt tagtattttg tgtaaagagt      1500
     ttcttgacag tgtcaaaaat gtgtaaactc atattttgtt gcttacaaat tttcccttgc      1560
     gttgttatgt ttttattttt gtgcatactc attaamaatt tcctatataa tagttctgca      1620
     ttaaaaaaat attgaaaaaa ctaaacgaaa ggccttattt ttgcatgcaa agtcaaaaaa      1680
     tatgttcttt tttcagtgtg taaagagttt cttgacatac tg                         1722
//
ID   Mariner-6_DSuz repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   05-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-6_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1292
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 127-127 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus. The consensus is ~97% identical to
CC   that of Mariner-4_SIn from the red imported fire ant.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1225
FT                 /product="Mariner-6_DSuz_1p"
FT                 /translation="MEKEQYRSVIRFLFLEGKSRSEIKERLDAVYGDSSPS
FT                 MATVKNWFNEFQRGRTSVFDEPRPGAPKTATTEDNVTKIHDLVLADRRLKI
FT                 REIAETVGMSKDRVGHILHEILGMRKLSARWVPRLLTPDNKRNRETTSEQC
FT                 LTLFKRNPKEFLRRFVTVDETWIHWYTPETKEQSKQWTSPGEPAPKKAKTV
FT                 PSAGKVMATVFWDSQGVIYIDYLEKGKTVTGLYYAELLGRFAAELQKIRPH
FT                 LAKKKVLFHHDNAPAHTSALAKAKLVELGYELLPHPPYSPDLAPCDFFLFP
FT                 NLKKSLAGQKFASNEEVVAATEAYFADLEKTYFSDGLKKLEHRWVKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1292 BP; 337 A; 310 C; 335 G; 310 T; 0 other;
     cgagggcagt ccgataagta cttagcctca ccgcccgatg gcgtcactat cgcaagagaa        60
     atttactatc gtgtagtaca ttctcgtaga cggctactgt cgaaatttca gccgaatcgg       120
     actcgtagtt ttgttttgac tgcgtgtgga atcggacgtg tccgcggatt ttagaaaaat       180
     ggagaaagag caatatcggt ctgtgattcg attcttgttt ttggaaggga aatcgcgcag       240
     cgaaatcaaa gagcgcttgg atgctgtgta cggtgactct tctccttcga tggcgaccgt       300
     caaaaattgg tttaacgagt ttcaacgtgg tcgcacgtcg gtttttgatg agccacgccc       360
     aggtgccccg aaaacggcta ccacggagga taacgtgaca aaaatccacg atctcgtatt       420
     ggcagaccgc cgattgaaga tacgcgagat agctgagaca gtaggcatgt caaaagaccg       480
     cgtgggtcat atcctgcatg aaattttggg catgagaaag ctgtcggcgc gatgggtgcc       540
     gcgtttgctc actccggaca acaaacgcaa ccgtgagacc acttcagagc agtgtttgac       600
     gctgtttaag cgcaatccga aggagtttct gcgtcgtttc gtgaccgtcg acgaaacatg       660
     gatccactgg tacacaccag agaccaagga acagtcgaaa cagtggactt cacccggcga       720
     acctgctccg aagaaggcga agactgtccc atcggccgga aaggtgatgg ccaccgtttt       780
     ttgggattca caaggtgtga tctacatcga ctacctggag aagggcaaaa cggtcacagg       840
     gctgtactat gccgaattat tgggccgatt cgccgccgaa ttgcagaaaa tacggcccca       900
     tttggcgaag aaaaaagtgc tcttccatca tgacaacgca ccggctcaca cttccgccct       960
     cgccaaggcc aaattggtcg aattgggcta cgaactgcta ccccatccac catattctcc      1020
     agatttggcc ccgtgtgact tctttttgtt tccaaacttg aaaaagtcac tcgctggaca      1080
     gaaatttgcg tcgaatgagg aggtcgtcgc cgccacagag gcctattttg cagacctcga      1140
     gaaaacgtat ttttcagacg ggttaaagaa gttggagcat cgctgggtca agtgtatcga      1200
     gctaaaagga gattatgttg agaaataaat cgccactttt ccaaaatttt cgtttttctt      1260
     ttggaggcta agtacttatc ggaccaccct cg                                    1292
//
ID   Mariner-6_DTa repbase;    DNA;    INV; 1500 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1500
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6155-6155 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1500 BP; 447 A; 278 C; 304 G; 460 T; 11 other;
     cagttgcggc aaacataata gcaccgatgt gtagacgctt cttatttttg ctataaaatg        60
     cgtttttttt ttgttttttt ttctttctgt tgctttactt gttcgaaact ctgtgctgtt       120
     ttttcttttt acttgcattg aagatcagtg tctttaattg attggccaaa gaaagttata       180
     aatttcgcta attatgggtc gtgcgatgcm ctgcactgag ggaaatcgga aaagaatcaa       240
     aaagctaatt ttcgaaggca atacctatgc ccaggtsggg caaatcgtcg gttgstctaa       300
     caaaatgatt cgtaatgccc taatgtataa ttccaagccc gaaacacgcg gtagaaatgc       360
     cgtaataaca ccaaaaatga aatcgcgcct ggtgcgccaa agtaagatgg acccatttaa       420
     gccggctagc gagcttaaaa aggatctgaa cacatccgca gccattacaa ctgttagatc       480
     ttgtttwcgt gaamgtaaat tattcgcccg cagtccgagw aaagtgcctt tattgactaa       540
     gaagaaccta gcaaaacgaa tgaagtttgc aaaacagtac cttagttggc cccaagaaaa       600
     atggcggaac atattgtggt ctgatgagag caaamtagtt ttatacggtg gaaaagggtc       660
     tcgatcattc gtaaggagac cccccaattc ggaatacaac ccmtgttata ctggcaaaac       720
     gattaaacak ggggggcagc atcatggtgt ggggctgctt ttcgtactat ggagtcggcc       780
     ctattcactg gattagaccc atcagggatc aacatgtcta cgtcgatatt ttagaaactg       840
     ttatgctacc atatscggag ttcgaaatgc ctttgttttg ggtgtttcag caagacaacg       900
     acccaaagca tacgagcagg aaagctcgac cgtggtttga gaccaacaat gtaaatgtct       960
     tggagtggcc cgcacagtcg ccagacttaa atccgattga aaaagtttgg agtgacatta      1020
     aaaaatatgt ttctaagtcg aaaccaagga ataacaagga gctctgggcc actgtgcatg      1080
     tgtcgtggaa taatataacc aaggaaagat gtcaggatct ggtaaactct atgccgagac      1140
     gatgtgccgc tgtccttgcc gctaaaggct tcacaaccaa atattaatct taattattta      1200
     tcattaatca ttatcccaca tttatttgga taattttttt tgaagaaatc gtagtatttt      1260
     catgttttta ctaatttttt aaatttggtg ctatttttgt tgccggacaa atttccttat      1320
     aatttcatat ttttgtgaaa tactttcatg taaagtatta aatgcataca aatgctttta      1380
     atttcattaa aaaatatgtt cttgctttaa aaaatgtgct caagatcaag ccattakttt      1440
     gaataaaatc ttcctgtata gccactctta tgtcatggtg ctatgttgct gccgcagctg      1500
//
ID   Mariner-6_DY repbase;    DNA;    INV; 1661 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.09, Created)
DT   09-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Drosophila yakuba.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1661
RA   Jurka J.;
RT   "DNA transposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1746-1746 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           343..1269
FT                 /product="Mariner-6_DY_1p"
FT                 /translation="MGRGKHCSVEERRMIFNLTESGNTPAEIAEIMKCSRK
FT                 MVYNALKVAKENTAYLTNQKKRKPKPRKTDPRTDMLIVRKSKADPFKSSRE
FT                 IMEEINKECGTNVSRKLVARRLNEASLFGRISRKKPLPSKRNISQRLSFAR
FT                 AHRDKDLSFWKNILWSDETKINKVGPDGKTFVRRPKGQALNPRYTMKTVKH
FT                 GAGSIMCWGAFSWRGVGPLYRINGVMDRFTYADILKNQMEPFTFENMPLKW
FT                 TFQHDNDPKHTSRVVKKWLKDESIQVLERPAQSPDLNPIENLWNDVKVMIS
FT                 KKKFSNLDDLWKGVQEA"
XX
SQ   Sequence 1661 BP; 555 A; 304 C; 320 G; 481 T; 1 other;
     catacgtaca gccgtggacg tataaatagc acacatcaga acagtaactt tagatcgatt        60
     atttcagaag tatttggctt tcgattccaa aaattttgat gtgaatcgat tattgctctc       120
     ttctacatga cgtacaaccc aaaaatttac cgttatcatt tttttcttct gctttatgct       180
     taattttcgt tcgcgagcga ttttttagcg tggtcacaga aatagcacac tttaaagaac       240
     ttacagcaaa tcccgtgtaa aaagtggttt ttctaagttt tttttcgtga tttaaaaaat       300
     ttcgtcaaca aattaatgta atttaataca aaagttaaaa aaatgggtcg aggaaagcat       360
     tgttcagttg aagaaaggag gatgatattc aacctaactg aatctggcaa tacacctgct       420
     gaaattgccg aaataatgaa atgttcgagg aaaatggtat ataatgcact gaaggtagcg       480
     aaggaaaaca cagcatattt gaccaatcaa aaaaaacgca aaccaaagcc acgaaaaact       540
     gatccgcgta cagatatgct catagtacgg aagagcaagg cggatccttt caagtcctcc       600
     cgcgaaatta tggaggaaat aaataaagaa tgtggcacaa atgtatcgag gaaattagtg       660
     gcaagaagac taaatgaagc ttccctcttt ggacgcatca gcagaaaaaa accgctcccg       720
     tcaaaacgca acatatcgca acgattaagt ttcgcacggg cccacaggga taaggacctg       780
     agtttttgga aaaacatcct ttggagcgat gaaacaaaaa tcaataaagt aggacccgat       840
     gggaaaacat ttgttcgtcg tccaaaaggc caagctctta accccaggta caccatgaag       900
     actgttaagc acggtgccgg ttccattatg tgctggggtg cattttcctg gcgnggtgtg       960
     ggtccgcttt accggatcaa tggcgtaatg gatcgcttta cgtatgcgga cattctcaaa      1020
     aatcaaatgg aaccatttac gtttgagaac atgcctctga aatggacatt ccagcacgac      1080
     aacgacccaa agcacacatc tcgtgtcgtt aaaaagtggt tgaaggacga atccatccaa      1140
     gttctggaac ggccggctca aagccctgac ctaaatccaa tagaaaatct atggaatgat      1200
     gtcaaggtta tgatatccaa aaaaaaattt tcgaatcttg acgatttgtg gaaaggtgtc      1260
     caagaagcct agaactccat tccaaaggag agatgtcaga agcttgtgga gagtatgggt      1320
     cgaagatgta acgcagtcat cgaaaatcat ggatactcaa ccaaatatta aatttgcttt      1380
     acattaatta cttttaaact tattttttat gattaattaa gatattttga aattgtgcta      1440
     tttctgtgac cacgcatttt tcgttgtttt ttagttttta aatttccaca tctttttttt      1500
     taaacattta ctcattttga ttaactaatt tattagttta taagctaagc tatgaagaac      1560
     gaaagccgtt ttatttccaa gaaatatttg ttatttaaaa aaactattcc gaaagatgaa      1620
     cttcattttg tgctatttat acgtccacgg ctgtacgtat g                          1661
//
ID   Mariner-6_FoCa repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-6_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1646
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2474-2474 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. TA TSDs. 217-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           328..1365
FT                 /product="Mariner-6_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MSKVRTETTVAERARIIDAWEGDENGSKTLKEISEIL
FT                 KIKYTTVWKIIDRYKKSNSIANKAGRGRKQTFTDREKRSIVKFVKINPRSS
FT                 AVDISNATETATGKKTSPKTIRRILNSNGYKNFRAKRKPFISKTNMKKRLK
FT                 FAKEHLNKDQAFWDKVLWSDESKFNIFGSDGRIKVWRKKKEALKMKNLNPT
FT                 VKHGGGSAMVWGCFSSSGPGKMEFVETTMNQHVYQGIIDRNVKSSAAKLKL
FT                 GRRFIFQQDKDPKHTAKSTWAFFKTQKITVLDWPPQSPDLNPIEHLWDHIE
FT                 REIRKTPISNKNEVKRRLSEAWETTPPEVTTTLVNSMRSRCIAVIEAKGGP
FT                 TRY"
XX
SQ   Sequence 1646 BP; 578 A; 292 C; 344 G; 432 T; 0 other;
     cactagggga caatattgag taaattggaa gaatgatttc attcaaacat ggaaatctca        60
     aaaactaatg gatggaaatg aataattgtt tttgcataat gtgtagaatt taatcagcta       120
     cgaagtcaaa cataaataca tgtaatgggt atatatcctg tcttgaaaaa atgcgcgatt       180
     tgtaaagaaa aaaatacggg atagacaaaa ttgagtagat tttttaattt tgtcgttata       240
     acttgataag gtaagcaaat ctttctatca agtatggtca ttatggtgta gatacaactt       300
     gtgaacattt ttattcttcc aattaggatg tcaaaggtca ggactgagac cacggtggca       360
     gaaagggcgc gcatcattga cgcatgggaa ggagacgaaa atgggtcaaa aactttaaaa       420
     gaaatatcag aaattttaaa aatcaagtac acaactgttt ggaagatcat tgaccgctat       480
     aaaaagtcaa acagcattgc caacaaggca ggtaggggaa gaaagcagac tttcacggac       540
     cgagagaaac gttcaatcgt gaagtttgtg aaaataaatc cgagatccag cgccgtggat       600
     atttcgaatg ctactgaaac tgccacagga aagaagacca gtcctaagac tatcagaaga       660
     atcctaaatt cgaatggata caaaaatttt cgagcgaaga gaaagccctt catttccaag       720
     acgaacatga agaaacgact gaagtttgcc aaggagcatc tcaacaagga ccaagctttc       780
     tgggacaaag ttttatggtc cgacgaaagc aaattcaaca tttttgggtc ggatggtcgg       840
     atcaaagtgt ggaggaagaa aaaggaagct ctgaaaatga agaatttgaa ccccactgtc       900
     aagcatggtg gaggaagcgc catggtgtgg ggttgtttca gctcttcagg tcctggaaaa       960
     atggaatttg tcgaaacgac catgaatcaa catgtttacc agggcataat cgacaggaat      1020
     gtcaaaagtt cggcagcaaa actgaaactt ggcaggcgtt ttatcttcca acaagataag      1080
     gatcccaagc acaccgctaa gtcgacttgg gcgtttttca agacccagaa gataacggtg      1140
     ctggactggc caccacaaag tcccgatttg aatccaattg agcacctctg ggatcacatt      1200
     gagcgggaaa ttcgaaaaac gcctatttcg aacaaaaacg aggtaaaaag gcggctttcc      1260
     gaagcatggg aaactactcc accggaagta acaacaacgc tcgtcaactc gatgagaagc      1320
     cgctgcattg ccgtgattga agctaaagga ggtccaacta gatattaatc gcaaaaaaat      1380
     tcaaattgat atctttcttt agaaaataat agtaaaagtc tgaaaaattt actcaatttt      1440
     gacccttcca tatttttttc ttcacgattc gggcatattt tcaaaaaagc ggttatactc      1500
     agtaccttaa ttgatctttg gttttatagt tacttaaatc ctacacatta tgcaaaagaa      1560
     attattcatt tccatactat agtttttgag atttccatgt ttgaatgaaa tcattcttcc      1620
     aatttactca atattgtccc ctagtg                                           1646
//
ID   Mariner-6_HMM repbase;    DNA;    INV; 1734 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1734
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2644-2644 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..1192
FT                 /product="Mariner-6_HMM_1p"
FT                 /note="HTH and DDE transposase."
FT                 /translation="MAYSHFTATEYMDMILIYGECGQNGALAVQTYRERYG
FT                 DSRRCPSDYRTIVKAVQRGRENQPLVPHQERVSSQELPIVREMEILNYIHR
FT                 NPTTSLRRTANQFQVSHFTVHKILKRNKRRPFKYTKVQALLPRDRPIRVAY
FT                 CQWLLDNVIIDSDFVFNILWTDESTFTRNGIWNPQNFRYWSEQNLHLSRED
FT                 NHQYRFAVNVWAGIHRNAIIGPVFIDGNLNTQKFLELIRGPVTEYVDQIPL
FT                 DVYRKMWFQLDGAPAHSGMLARNTLASIFGEQWIGRYGPRRWPARSPDLTP
FT                 LDFFCGGK"
XX
SQ   Sequence 1734 BP; 514 A; 306 C; 349 G; 562 T; 3 other;
     cgattatgtt tccctgctga catcgatgtt atgttttatt taatgtaaca tccttatttg        60
     aactgttaac accgatgatc atcgggggct tccctaagct aaagtaccta tacgtgactg       120
     tcggcttgtc tttgttaaat tatttcgttt tttctgtcgt tatctgtatt cttgtgtata       180
     tcgtgttttt attactattt gtattatcat tatttgtgtt tttgtgatat ttactttacg       240
     aatttggaca attctttttt tttaactttt agttagtgtt ttttatttta aaatggcgta       300
     ttctcatttt actgctacgg agtatatgga tatgatttta atttatggag aatgtggaca       360
     aaatggagct ctcgcagtac aaacataccg agaaaggtat ggtgatagtc gtagatgtcc       420
     atcagattat cgtacaattg taaaagctgt acaaaggggc cgagaaaacc aaccattagt       480
     gccacaccaa gagcgtgttt cgtcacagga attaccaata gtgcgagaaa tggaaatttt       540
     aaattatatc catagaaatc ctacgaccag tttacgcaga acagccaatc aattccaagt       600
     tagccacttt acggtacaca aaattttaaa acgaaacaaa cgtcgtccgt tcaaatacac       660
     aaaagttcag gctttattac caagagacag gcctatcaga gtagcatatt gccaatggct       720
     gctagacaat gtcatcatcg actcagattt tgtatttaac attttatgga ctgacgagag       780
     cactttcact cgcaatggca tttggaaccc gcaaaatttt agatattgga gtgaacaaaa       840
     tttacatcta agtcgagaag ataatcatca atacagattt gctgtcaatg tatgggctgg       900
     aattcacaga aatgcaataa tagggccagt ttttattgac ggcaacttaa atactcagaa       960
     atttttagaa ctcatacgcg gccccgtaac agaatatgtc gaccagatcc ccctagacgt      1020
     atatcgtaag atgtggtttc agttagatgg agcacccgca cactctggaa tgcttgctag      1080
     aaacacgctc gcgagcatat ttggagaaca atggatcgga aggtatggac ctcggcggtg      1140
     gcctgcccgt tccccggacc tcacgccgct tgattttttt tgtgggggca agtaaaaaat      1200
     gaagtttatg cgtcagaagt ccatacagaa gacgagctcc ggcaaagaat tatgagtgct      1260
     tttgataaaa ttaaagactt agccgcgcag ggggatctac tgagtaaagt aagacataat      1320
     ttgctacgca gatgcaattt atgtattaat aagcaagggg gacacttcga aaatttgaaa      1380
     acctgataga aaaaattcaa taaaagtgtg tgtaaagtgt attcctaagt gttgcgttga      1440
     tttaacatcg gctcgccgcc gtcgcctaca tagtacatac ctacgctagt tgctgcgact      1500
     cgatttcttg aatgaagcgt gtgcgacgtt gccgcgccga caggtaagtg tgtgtgataa      1560
     tattacactt tacaaatggc gttttwtttt aaaacgatta ttttattatt tattttgttt      1620
     gaaaaaataa ctttttcatt tttgggaatt attttttttc tgaattatat taggctttta      1680
     tagagtmgtt aaaactgtgg tttcatttaa agtggtgckt tcaattccac cctg            1734
//
ID   Mariner-6_HSal repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-6_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1299
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 846-846 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..1193
FT                 /product="Mariner-6_HSal_1p"
FT                 /translation="MTSYTIEQHVQMIKLYYQNECSLVQTLRALRPFYGRR
FT                 GGPSKSTLQRLVAKFETTGSVNDQPTPVRQRNARSAENIAAVSESVQENPR
FT                 QSIPRRAQELGLSQTSTWRILRRDLGLHPYKIQLAQELKVNDHRQRRLFAD
FT                 WASEHLEEDPNFGRKIIFSDEAHFWMNGYVNKHNCRIWHDANPHEVQQVAM
FT                 HPQKVTVWCGFWAGGVIGPYFFENDVGEAITVNGERYRTMITNFFWPKLND
FT                 MDVDDMWFQQDGATCHTADATMDILHERFEGMVISRRGDVNWPPRSCDLTP
FT                 LDFFLWGFLKSQVYANKPQSTDALKVNITQAIAQIQPDLCGRIIENWTTRI
FT                 RATVRSRGGHLNDVIFHT"
XX
SQ   Sequence 1299 BP; 335 A; 323 C; 324 G; 317 T; 0 other;
     gggtttttca attggtgcgg gtcgatgttg gcagcctgtg gcggccatgt tgttttggcg        60
     gcgtctgtct aacctgttgt ttattattca gtcactgatg ccaaatcacc atgacaagtt       120
     acacgattga gcagcacgtc caaatgataa aactttatta tcaaaatgag tgttcgttag       180
     tgcaaacgtt gcgcgcgttg cgcccatttt acggcagacg cggtggccct tcaaagtcga       240
     ctctccaacg tttggtggcc aaattcgaga cgaccggttc ggtaaacgat cagccaacac       300
     ccgtacgtca aaggaacgcc agatcggccg agaacatcgc cgctgtaagt gaaagtgtgc       360
     aggagaaccc gaggcagtca attcctcgcc gtgcacaaga actcggcctt tcgcagactt       420
     caacttggcg aattttgcgt cgggacttgg gcctgcaccc gtacaagatc caactggccc       480
     aggagctcaa agttaatgac catagacaac gccgtttgtt cgctgactgg gcttcggagc       540
     atttggaaga ggaccccaat tttggccgaa aaatcatctt tagcgacgag gcgcattttt       600
     ggatgaatgg ctatgttaac aagcataatt gccgtatatg gcacgacgcc aacccacacg       660
     aggttcaaca ggtagcaatg catccacaaa aagttactgt ttggtgcgga ttttgggccg       720
     gcggcgtcat tggtccgtac tttttcgaaa acgacgttgg tgaggccatc accgtcaatg       780
     gcgagcgcta cagaacgatg ataaccaatt tcttttggcc caaattgaac gatatggacg       840
     tggacgacat gtggttccag caggacggcg ctacgtgcca cacagcggac gccacgatgg       900
     acattctgca tgaacgattt gagggtatgg ttatctctcg cagaggtgac gtgaattggc       960
     caccaagatc gtgcgatttg accccgctag actttttctt gtggggtttt ctgaagtcgc      1020
     aggtctatgc caataagccg caatcgaccg atgcccttaa agtcaacata acccaggcca      1080
     tcgctcaaat tcagccggat ctatgcggca gaatcattga aaattggacc actcggatcc      1140
     gtgccaccgt gagaagccgc ggcggacatt tgaacgatgt tatattccac acataatggc      1200
     atacatgggc ctttcaaata aaaaaagaat ttcgttaata cctcacacac agcttgtttt      1260
     attccattgc aacatcgacc cgcccttatt gaaaaaccc                             1299
//
ID   Mariner-6_LHu repbase;    DNA;    INV; 1297 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1297
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 364-364 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1228
FT                 /product="Mariner-6_LHu_1p"
FT                 /translation="MEKEQYRSVIRFLFLDGKTCEEIKVKLHVVYKDHAPS
FT                 MTTIRYWFNEFKRGRTSVFDEERPGRPIEVTTEDMVNKIHDIVLADRRVKI
FT                 REIADIVNISIERVQNILHEKLGMRKLSARWVPRLLTVEQKRNRMTTSKHC
FT                 LDMFKRNPKEFLRRFVTVDETWIHHYTPETKEQSKQWISPGEPAPKKAKTV
FT                 PSAGKIMATVFWDSRGIIFTDYLEKGRTITGQYYADLLGRFDAELKRKRPH
FT                 LAKKKVLFHHDNAPAHSSAIATAKLVELRYELLSHPPYSPDLAPCDFYLFP
FT                 NMKKWLGGKRFTSNEEIIAETEAYFAEFDKSYFLDGIKMLEYRWIKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1297 BP; 394 A; 265 C; 298 G; 340 T; 0 other;
     tacgagggct gtatgataag tacccgtgtt taacgacaga aagcatcatt gactcaaagt        60
     ctgtatacca tcgtttaacg tcatcttcta aacgacgcca gtcaaaattt caaacagatt       120
     tatcgagtag ttttgttttg acaactgttg aaagtggaca aggttgtgtt tgtttgcaac       180
     catggaaaaa gagcaatatc ggtcagtgat tcgattcctt tttttggatg ggaagacgtg       240
     tgaggaaatc aaagtgaagt tgcatgtcgt ttataaggac catgcacctt cgatgactac       300
     catcagatat tggttcaatg aatttaagcg tggccgaaca tccgtttttg atgaagagcg       360
     cccaggtcgt ccgattgagg tgactacgga ggatatggtc aacaaaatcc atgatatcgt       420
     gttagcagac cgccgggtga agatcagaga gattgctgac attgtaaaca tctcaattga       480
     acgcgtacaa aatatcctac acgaaaaatt gggcatgaga aagctatcgg cgagatgggt       540
     gccgcgtttg ctcacagtgg aacaaaaacg gaatcgcatg acaacttcga agcactgttt       600
     ggacatgttt aagcgcaatc cgaaagagtt tctgcggcgt ttcgtcactg ttgacgaaac       660
     atggatccat cactacacgc cagaaacgaa agaacagtca aaacagtgga tttcacctgg       720
     cgaacctgct ccaaagaagg caaaaacggt tccatcggcc ggaaagatca tggccaccgt       780
     tttttgggat tcgcgaggca tcattttcac cgactatttg gagaagggaa ggacaatcac       840
     ggggcaatac tatgccgatt tattgggccg attcgacgct gaattgaaaa gaaaacggcc       900
     tcatttggcg aagaaaaaag tgctctttca tcatgacaac gcaccagctc attcgtccgc       960
     aatcgccact gcaaaactgg tcgaattacg ctacgaattg ctgtctcatc caccctattc      1020
     tccagatttg gctccctgcg atttctattt atttccaaac atgaaaaaat ggcttggcgg      1080
     aaagcggttc acgtcaaacg aggaaatcat cgccgaaaca gaggcctatt ttgcggagtt      1140
     cgacaaatca tattttttgg atggtataaa aatgttggaa tatcgctgga ttaagtgtat      1200
     cgagctgaaa ggagactatg tcgaaaaata agtaaaaaaa ttttttttta aatgcgtttt      1260
     cttccctaac acgggtactt atcatacagc cctcgta                               1297
//
ID   Mariner-6_LMi repbase;    DNA;    INV; 1332 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1332
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3009-3009 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           163..1230
FT                 /product="Mariner-6_LMi_1p"
FT                 /translation="MSAVIENAAACEIRSVIRFLNAKKVKPKEIHRQICEV
FT                 YGQNAMSDSMVRRWVRLFNEGRDQVHDEERSGRPSVVTDELVHTIEEKIKH
FT                 NRKFTLSALAMEVPQISRSLIHEIVTEKLKFRKLCSRWVPKILTEQHKKQR
FT                 MGSALQFLTRYNEEGDGFLSRIVTGDETWVSYDTPETKRQSMEWRHTSSPT
FT                 KVKPKQILTPRKVMCTVFWDRKGILLIDFLPRGQTINAHGYCETIKKLRRA
FT                 IQNKRRGLLSKGVVFSHDNARPHTANVTKQLLREFHWDVFDHPPYSPDLAP
FT                 SDFHLFLHLKSVLGGQHFNDDDELKEHVTTWLNTQAATFYEEGIQKLVPRY
FT                 DKCLQNFGSYVEK"
XX
SQ   Sequence 1332 BP; 400 A; 291 C; 290 G; 351 T; 0 other;
     cgagggtcgt ccacaaagta agttccgttt ctatttctat ccgcggcagc gctacgatcg        60
     cagttccgag catgcgcggc agttactctg actcaaggag aagacatgta cgccattttc       120
     agatcgctgc tgccgacgtg tgctttgtag tgcttcttta taatgtcagc cgtaattgaa       180
     aatgccgccg cgtgtgaaat cagatctgtg attcgttttc taaatgcaaa gaaagttaaa       240
     ccaaaggaaa ttcatcggca aatctgcgag gtttacggac aaaatgctat gagtgattca       300
     atggttagaa gatgggtcag actgttcaat gaaggacgtg atcaagtgca cgatgaagaa       360
     cgaagtggac gcccgtctgt ggttactgat gaactggttc acacaattga agagaagatt       420
     aagcacaacc gtaagtttac acttagtgcc cttgctatgg aagttccgca aatctcacga       480
     tcactaattc atgaaattgt tactgaaaaa ctgaaatttc gaaaactttg ctcacgttgg       540
     gtacccaaaa ttcttactga acaacacaaa aaacaacgga tgggcagtgc acttcagttt       600
     ttgacacgct acaatgaaga aggcgatggt tttctttctc ggatagtcac gggggatgaa       660
     acttgggtat cgtacgacac ccctgaaaca aaacggcaat caatggaatg gaggcacact       720
     tcatccccaa cgaaggttaa gcctaagcaa atcttgacac ctcgaaaagt catgtgcacc       780
     gttttttggg acagaaaagg cattttgctg attgatttct taccacgagg ccaaacaatc       840
     aatgcacatg gttactgcga gaccattaag aaattgcgcc gcgcaataca gaacaagcgc       900
     cgaggattac tgtcaaaagg tgttgttttt tcccacgata atgcccgacc tcacacggcg       960
     aatgtgacca aacaactctt acgggaattt cactgggacg tgtttgatca tcctccgtac      1020
     agcccggacc tcgctcctag cgactttcat ctcttcttac acctaaaatc tgtccttggt      1080
     ggtcaacact tcaacgatga tgacgagctg aaagaacatg ttaccacatg gttgaataca      1140
     caggcggcaa ccttctatga agaaggcata caaaaacttg tgccacgcta tgacaagtgc      1200
     ctacaaaatt tcggaagcta tgtagaaaag tagtttaaca gttgtagatt tttgtacaat      1260
     aaatattttt tctgtatctg tacacgtttg ttttatataa ccaaacggaa cttactttgt      1320
     ggacatacct cg                                                          1332
//
ID   Mariner-6_MMo repbase;    DNA;    INV; 1339 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1339
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6268-6268 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           99..1262
FT                 /product="Mariner-6_MMo_1p"
FT                 /translation="MRTLEFFPPRSRVPVVSWWSLSEVLLVVFVGFSVSRK
FT                 MTERIEQRYCIKFCXRLGDSQSQTIRKIQQVFGEDAMGVTQIKQWFNRFKD
FT                 GRTSVESEQRSGRPQTARNAAVVERVRNLVMXNRRLTVREIAEDVGVSKDS
FT                 AHAILRDDLNMKRVAAKFVPKLLSQEQKDTRFDVAQDLLDTANTDPGFLNT
FT                 VITGDESWVYGYDPETKQQPSQWKHPDSPRPKKARQVRSEIKVLLTVFFDA
FT                 RGIVHHEYAPEGQTVTKEYYQDVLRRLRDAVRRKRPDMWTAKNWHVHHDNA
FT                 PAHSSQLIHTFLVKHGITTVRQPPYSPDLAPCDFWLFPKLKTPLKGSRFES
FT                 REDIMRNTTTELNNIPKEDFQRCFQQWKDRWAKCVEAQGAYFEGD"
XX
SQ   Sequence 1339 BP; 366 A; 299 C; 358 G; 314 T; 2 other;
     tacgagggct gtctaaaaag tatccgacct taattttttc cacgcaaagt agtgattctc        60
     aggcggcgcc actgtgcacg gtggaaggag gaaccttaat gcgcacgctt gaattttttc       120
     caccgcgttc gcgtgtgcca gtcgtgagct ggtggtcgct aagtgaggtg ctgttggtag       180
     tgttcgtcgg atttagtgtt tctcgcaaga tgactgaacg aattgagcaa agatactgca       240
     tcaaattctg txaaaggctg ggtgattctc aaagccaaac aattcgtaag attcagcagg       300
     tgtttggaga agatgcgatg ggtgtaacac aaattaaaca atggttcaac cgattcaaag       360
     atggccgcac atcagtcgag agtgagcagc gtagcggcag gccccaaact gctcggaacg       420
     cagctgttgt tgagcgggtg cgaaatttgg tgatggxaaa tcgccgtttg acagtgcggg       480
     agattgcaga agatgttgga gtgagtaaag attctgcaca tgcaattttg cgtgacgatt       540
     tgaacatgaa acgagtggct gctaaattcg tacccaagtt gttgtctcag gaacaaaaag       600
     acacccgttt tgacgttgca caggaccttc tggacaccgc caacactgat cctgggtttc       660
     tgaataccgt gataactgga gatgagtcat gggtgtacgg gtacgaccca gaaacaaaac       720
     aacagccgtc tcaatggaag catcccgatt ctccaaggcc gaagaaagcg cggcaggtgc       780
     gaagcgaaat caaggtgttg ctgactgttt tcttcgacgc ccgtggaatt gtgcatcacg       840
     agtacgcacc ggaaggacaa acagtgacaa aggagtacta tcaagatgtt ctcaggcgac       900
     tccgtgacgc agttcggcgc aaaagaccag atatgtggac agcgaagaac tggcacgtcc       960
     atcatgacaa cgccccagca cattcatccc aattgatcca cacgttctta gtcaaacatg      1020
     gaattacaac cgttcgccaa cctccctact ctccagacct ggctccttgt gacttctggt      1080
     tgtttccaaa attgaagacg cctctgaagg gatcccgttt tgagagtaga gaagacataa      1140
     tgcggaacac gacgacggag ctgaacaaca ttccaaaaga agacttccag cggtgtttcc      1200
     agcagtggaa ggatcggtgg gctaagtgtg tggaagcaca aggggcctac tttgaagggg      1260
     attagggtcc caaatctgtc aggtattcgc aactattttt tctggccaaa ggtcggatac      1320
     tttttagaca gccctcgta                                                   1339
//
ID   Mariner-6_PBa repbase;    DNA;    INV; 1240 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.03, Created)
DT   06-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1240
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 618-618 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           162..1169
FT                 /product="Mariner-6_PBa_1p"
FT                 /translation="MSENQEHFRHILLFYYKKGKNAAQATEKICHVYGEDA
FT                 LTRQTAANWFRRFRDGNFDVKDAHRSGRPIVENVDEIFQKIEENRHVSSYD
FT                 IAKELNIDHKTVLGHLRKAGYTKKLDVWVPHDLTVKNLMDRISICESLLKR
FT                 NEIEPFLKRLITGDEKWITYDNNVRKRSWSKRDEAPQTIAKPRLMLCVWWD
FT                 WKGVVHYELLPPGKTIDSDLYCQQLMRLEQSIQEKRPELINGKGVVFHHDN
FT                 ARPHTSLMTRQKLRELGWEVLMHPPYSPDLAPSDYHLFRSLQNSLNGVNLT
FT                 SKEACENHLSRFFIEKSQKFYTDGIMALPEKWQKVIDQNGTYLV"
XX
SQ   Sequence 1240 BP; 413 A; 221 C; 263 G; 341 T; 2 other;
     ggaaaaaktc tttttacata tagccgacag atggagatct ggtcgatttt tcacgtgtgt        60
     gttaggttaw atatcattgg aaaggtgcca cttcatataa cattttgaaa tagattgatc       120
     atagatttaa acgatactga cgcattcaat caaatttgaa aatgagtgaa aatcaggaac       180
     atttccgaca cattttactt ttttattata aaaaaggaaa gaacgctgcg caagccacag       240
     aaaaaatttg tcatgtttat ggagaggatg ctctaactag acaaacagca gcgaattggt       300
     ttcgccgatt tcgagatgga aatttcgatg tcaaagatgc acatcgttct ggtcggccta       360
     ttgtggaaaa tgtcgatgaa atcttccaaa aaattgaaga aaatcgtcat gtgagcagct       420
     atgacatagc taaggagcta aacattgatc ataaaaccgt tttggggcac ttgcgtaagg       480
     ctggatacac aaagaagctc gatgtttggg tgccacatga tttgacggta aaaaatttaa       540
     tggatcgaat ttccatttgc gaatcgctgc tgaaacgaaa cgaaattgag ccttttctga       600
     aaagattgat aacgggcgat gaaaagtgga taacatatga taataatgtt cgaaaaagat       660
     cgtggtcgaa acgagatgag gcaccacaaa caatcgcaaa gcccagattg atgctgtgtg       720
     tctggtggga ctggaaagga gtcgtccatt atgaactgct gccgccaggc aaaacgattg       780
     attctgatct ctactgtcaa caactaatgc gattggagca atccattcag gaaaagcggc       840
     cagaattgat caatggaaaa ggcgttgtct tccatcatga caacgctagg ccacacacat       900
     ctttgatgac tcgacaaaaa ttgagagagc ttggctggga agttttgatg catccaccgt       960
     atagtcctga ccttgcaccg tccgattacc atttgtttcg gtctttgcag aactctctta      1020
     atggagtaaa cttgacttca aaagaggcct gcgaaaatca tttatctcga ttttttatcg      1080
     agaaatcaca gaagttctac accgatggaa taatggctct acccgaaaaa tggcaaaagg      1140
     tcatcgatca aaacggcaca tatttggttt aataaaaagt ttgtaaacaa tttaaaaaat      1200
     atgtttcaat tatgctccaa cttgtaaaaa gactttttcc                            1240
//
ID   Mariner-6_RPr repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3252-3252 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..1225
FT                 /product="Mariner-6_RPr_1p"
FT                 /translation="MEKTEIRAVIKYFVKKGMKAKEIHADFQNTLGDSAPS
FT                 YSTVAKWTSEFKFGRESLDDDPRSGRPKSATTPEFIAKVHKKVMEDRRLKV
FT                 REIAEAVGMSSERVYHILTEELGMKKLSARWVPRLLTLDHKRTRLEMSEQS
FT                 LARFQRNQQDFLRRFVTTDETWVHYYTPETKQQSKQWKHAESPPPKKAKAV
FT                 RSAGKVMASVFWDAKGILLIDYLPTGQTITGQYYANLLDQLQEKIREKRPG
FT                 LARKKVIFHQDNARPHTSVIAMAKLHELRYELLPHPPYSPDLAPSDFHLFP
FT                 KLKIFLGGRRFPTTEELTAELERYFAGLEESHFRDGIKALEHRWTKCISLQ
FT                 GDYVEK"
XX
SQ   Sequence 1294 BP; 388 A; 283 C; 314 G; 309 T; 0 other;
     cgagggtggt ttgaaaagtt ctcggaatca ccgctagatg tctgtgctag agcaacgagg        60
     ttcccgcgca ataatcacac atcctttgtg agtgaacacg tggcgcgtca gtgctcttgc       120
     tgcaggagag tggtagtgac gactctttgt tgttgttccc gcgtagtgat ttgtgacaat       180
     ggaaaaaact gagattcgag cagtgattaa gtactttgta aagaaaggta tgaaagcaaa       240
     ggaaattcat gccgactttc agaacacact gggggactct gctccttcat attcaactgt       300
     tgccaagtgg accagcgagt ttaaatttgg tcgggagagc ttagatgatg atccgcgtag       360
     tggacggcca aaaagtgcta cgaccccaga atttatcgca aaagtgcata aaaaggtcat       420
     ggaggatcgt cgactgaaag tgcgagagat tgctgaagct gtagggatgt catctgaacg       480
     ggtatatcac attttaaccg aagaattggg aatgaaaaaa ttatccgcaa gatgggtgcc       540
     gcggctcttg acattggacc ataaacgtac cagattggaa atgtccgaac aaagtctggc       600
     ccgttttcag cgcaaccaac aagatttttt gcgccggttt gtgactacag atgaaacttg       660
     ggtccactac tataccccag agacaaaaca gcagtcaaag cagtggaaac atgctgagtc       720
     accaccacca aagaaagcaa aggcagtacg ttcggccgga aaggtcatgg cctcagtttt       780
     ctgggatgca aaaggcattc tgctgataga ttatcttcct actggccaaa caattacggg       840
     gcaatactat gcaaacctcc tagaccaact acaggaaaag atacgcgaaa aaaggcctgg       900
     tttggcaagg aaaaaagtca tctttcatca ggacaacgcc cgcccgcaca caagtgttat       960
     tgccatggca aaacttcatg aactgaggta cgaattgttg ccacatccac cttattcacc      1020
     tgatttggca ccatcagact ttcatctctt ccccaagctg aaaattttcc tcggtggacg      1080
     gagatttcct acaacggaag aactgacagc cgaattggag aggtattttg caggcctgga      1140
     ggaatctcat tttcgagatg ggatcaaggc attggaacat cgctggacca aatgcattag      1200
     tctacaggga gactatgttg aaaaataaaa gcagttccac cgaggtaaga cacttctttc      1260
     tagtacattc cgagaacttt tcaaaccacc ctcg                                  1294
//
ID   Mariner-6_SIn repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   20-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-6_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1291
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 323-323 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. 31bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1210
FT                 /product="Mariner-6_SIn_1p"
FT                 /translation="MSSFVPTNYDLRTALVFCYHLKKTAAESHRMLVEAYG
FT                 EHALGKTQCFEWFKKFKSGDFDVRNEERGKPPKKFADNELQALLDGDDTQT
FT                 QQELADQLNVTQKAVSIRLKAMGKIQKVGKWVPHELNERQQENRKTTCEML
FT                 LDRYKRKSFLHRIVTGDEKWIYFENPKRRKSWVNPGEPSTSTARPNRFGKK
FT                 TMLCVWWDQKGVIYYELLKPGETVNIDRYQQQMIDLNRALREKRPEYGKRQ
FT                 HKVILLHDNAPSHTAKRVRETIEAFSWEILAHAAYSPDLAPSDYHLFASLG
FT                 HALAEQRFNSYENVRKWLDNWFASKEELFFWRGIHKLPERWEKCINSNGDY
FT                 FE"
XX
SQ   Sequence 1291 BP; 427 A; 257 C; 277 G; 330 T; 0 other;
     taccaggtgt agaagtatga aaccggaatt tccctataga tggtgctagc catcagttta        60
     gggatcgtaa gaccgcttct gcagcgccat catctccctc taacagctga cgaagatttt       120
     caacacacaa caacccaagt tccatacacc ggtatatttt tctataacct taaacatgtc       180
     gagttttgtg cctacaaact acgatttgcg gacagcattg gttttctgtt atcatttgaa       240
     gaaaactgct gcagaatcgc atcgaatgct tgtcgaagct tacggtgaac atgctcttgg       300
     taaaacacag tgtttcgagt ggttcaaaaa attcaaaagt ggtgattttg acgtgagaaa       360
     cgaagagcgt gggaaaccac cgaaaaagtt cgcagacaac gaattgcaag ccttattgga       420
     tggagatgat actcaaactc aacaagaact cgcggatcaa ttgaatgtga cgcagaaagc       480
     cgtctccatt cgtttgaaag ctatgggaaa gattcagaaa gtgggaaaat gggttccgca       540
     tgaactgaat gaaagacagc aagaaaatcg aaaaaccact tgtgaaatgc tgctcgacag       600
     atacaaaaga aagtcatttc tccatcgaat cgtgacaggt gatgaaaaat ggatatattt       660
     tgagaatcct aagcgtcgta aatcatgggt aaatccaggc gaaccatcga catccactgc       720
     aagaccaaat cgctttggaa agaaaacaat gctctgtgtt tggtgggatc agaagggtgt       780
     aatctattat gagctgctaa aacctggtga aaccgttaac attgatcgct accaacagca       840
     aatgatcgat ttaaatcgag cattacgtga aaaacgaccg gaatatggaa aaaggcaaca       900
     caaagtcatt ttgctccatg ataatgcccc atcacacaca gcaaaacggg tcagggaaac       960
     gatcgaggcg ttcagttggg aaatactagc gcatgcggct tattctccag acttggctcc      1020
     gtccgattat catctattcg catcactggg acacgctctc gctgaacaac gcttcaattc      1080
     gtatgaaaat gtacgaaaat ggctcgataa ctggttcgct tcaaaagaag aactgttttt      1140
     ttggcgtggc attcataaac tgccggagag gtgggaaaaa tgtataaata gcaatggaga      1200
     ttattttgaa taaaatattt tttatcattt tcaaacaaca gacgtgtaat ttttacaaaa      1260
     aaattccggt ttcatacttc tacacctggt a                                     1291
//
ID   Mariner-70_HSal repbase;    DNA;    INV; 1283 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-70_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1283
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 915-915 (2014).
XX
DR   [2] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..974
FT                 /product="Mariner-70_HSal_1p"
FT                 /translation="MEKIEYRSVIKYLNLKGKTPTEIKTELDSVYGDSAPS
FT                 FSTVKVWVAEFKRGRTSVFDDERPGRPKTATTEEMVDKVHQIVLDDRRLKV
FT                 REIADAAGISSERVFKILHEDLDMRKLTARWVPRLLTLDQKRIRHNISKEC
FT                 LDRFKRDTKDFLRRFVTVDETWIHHYTPESKEQSKQWTSPGEPAPRKAKMF
FT                 HSAGKVMATVFWDSHGILLIDYLQEGKTITGAYYASLLERLKEEIAKKRPH
FT                 LKKKKVLFHQDTSSHICNRHGQTA"
XX
SQ   Sequence 1283 BP; 388 A; 258 C; 310 G; 327 T; 0 other;
     cgtgggttgt ttgataagtt tcgagcctga acatgaagat gacgttactg gtcggaaact        60
     gttgtaaggt gtgaaagcta catcttttta ataagtgctc ccaaatgttc agccatatgc       120
     gacgcttagt tttgttttga cagtcagttg tagtacgcgt gtcagtatat ttttcaacga       180
     tggaaaaaat cgaatatcgt tccgtgatta aatacttgaa tctaaaaggg aaaaccccaa       240
     cggaaatcaa aaccgagttg gattctgttt acggtgactc tgctccttcg ttttcaacgg       300
     tgaaagtttg ggttgccgag tttaagcgtg gccgtacaag tgtgtttgat gacgagcgcc       360
     cgggtcgccc aaaaactgca acgactgagg aaatggtcga caaagtgcat caaatcgtac       420
     tggatgatcg gagactgaag gtcagagaga tagcagatgc cgcaggcata tcttctgaac       480
     gtgtgttcaa aatattacat gaagatttgg atatgagaaa gctgactgcg cgatgggtgc       540
     cgcgtttgct gacgttggac caaaaacgca ttcgacacaa catttcaaag gagtgtttgg       600
     accggttcaa gcgggataca aaggattttt tgcgtcgatt cgtgactgtt gacgaaacat       660
     ggattcacca ctacacacct gaaagcaagg aacagtcaaa gcagtggact tcaccaggcg       720
     aacctgctcc gaggaaggcg aagatgtttc attcggccgg aaaagttatg gcgactgttt       780
     tttgggatag ccatggcata ttgctcatcg attatcttca ggaaggaaaa actatcactg       840
     gcgcatatta tgcatcatta ttagaacgtt tgaaggaaga aatcgcgaaa aaaagaccgc       900
     atttgaagaa gaaaaaggtg ctttttcacc aggacaccag ctcacacatc tgcaatcgtc       960
     atggccaaac tgcatgaatt acgctacgaa ttggtccccc ccccctattc gcctgatcta      1020
     accccctgcg acttttttat tcccgaacat gaagaaatgg ttgggaggaa aaaattcgcg      1080
     accaatgagg aagtgattgc cgccgtaaac gagtattttg cagggcttga cccaacctac      1140
     tttgctgacg gaatgagagg actagaaaag agatggacaa agtgtatcga gctaaaagga      1200
     gactatattg aaaaataaaa cccattttgc ccaaaaatat aagtgcttca ttgttaggct      1260
     cgaaacttat caaacagccc tcg                                              1283
//
ID   Mariner-70_LMi repbase;    DNA;    INV; 1436 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-70_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1436
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 66-66 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1259
FT                 /product="Mariner-70_LMi_1p"
FT                 /translation="MHRFTNAELADMHFMYGAAQGNGLAAQRMYMERFPDR
FT                 HQPDRRTFERLHRELRSSGSFYASRRGAGIRRYRRTPAVEERILDTVEDNP
FT                 STSSRAVGRALGVSHQSVLRTLHEDGMHPYHLQRVQALTPDDYLPRLNFAR
FT                 WYLQQTAANHTFPADVLFTDEATFTRSGVFNIHNSHLWAHGNPHGTIAHAY
FT                 QERFSINVWAGIVNNNLVGPYILPSRLTGRTYKIFLQEVLPELLDDVPLAV
FT                 RRRMWFQHDGAPVHFSRNVRNHLDAVYGQQWIGRGGPVPWPPRSPDLTCVD
FT                 FFLWGHIKSLVYESPVTSEEDLVARVSVAAGHVVDMPDVFSNVRRSMHRRC
FT                 ESCIAVGGRSFEHLL"
XX
SQ   Sequence 1436 BP; 343 A; 349 C; 346 G; 398 T; 0 other;
     caggtggtcc taaaatatat gtcaaaaatg aaacggccgg tagaggggac cgaaataagc        60
     agatttcgta taggaatgtg tggtcggtaa tgacgccttg agccggtaga gagcgctgaa       120
     gagtgcgctg tttacaagcg cttcgctagc tggattcatc atttcccgca cggatctcga       180
     gcagcatgca tcgtttcacc aatgcagagc tggccgacat gcatttcatg tatggggctg       240
     cacaaggaaa tggattggct gctcaaagga tgtacatgga gcgattcccg gataggcatc       300
     agccggatcg tcgaacattc gagcgtcttc atcgggagtt acgctcgagt ggatcgtttt       360
     atgcttccag gcgtggagct ggcattagaa gatatcgcag aactcctgca gtggaagaaa       420
     gaatattaga cacagtagag gataatcctt cgacaagttc gagagctgta ggacgtgcgt       480
     tgggtgtgag tcatcaaagt gttttgagga ctttgcatga agacggaatg catccgtacc       540
     atttacagag agtgcaagca ctaacacctg acgattatct tccacgtctc aactttgctc       600
     gttggtacct acagcagact gcagccaatc acaccttccc tgccgatgtt ttatttactg       660
     atgaggctac ctttacgcga tcgggtgtgt ttaacatcca taattctcac ctgtgggctc       720
     atggtaaccc acacggcaca atagcacatg cctaccaaga acggttttcc attaatgttt       780
     gggcaggcat tgtgaacaat aacttagtag ggccgtacat tctacctagt cgtttaactg       840
     gccgcacata caaaatattc ctacaggagg tcttacctga acttctggac gatgttccac       900
     tagctgttcg cagacgaatg tggttccagc acgatggagc cccagtgcac ttcagtcgaa       960
     acgtcaggaa tcacctggac gctgtctacg gccagcagtg gataggacgg ggcggaccag      1020
     ttccctggcc accccgttca cctgatttaa cctgcgtgga tttcttcctt tggggtcata      1080
     ttaaaagcct ggtgtatgag agtcccgtca catctgaaga agatctagtt gcccgcgtgt      1140
     ctgttgctgc tggacatgtg gtcgacatgc ctgacgtctt ttctaatgta cgccgatcca      1200
     tgcaccgtcg ctgtgaatct tgtatcgctg ttggtggccg ctctttcgag cacctcttgt      1260
     aaactatcaa taaatgtttt gtctttactt cccttttcag tttcctttct ttcatacttc      1320
     tgtacacgct agcgctgtaa tgtgtcatta ccgaccacac attcctatac gaaatcgctt      1380
     atttcgctcc ctctacctgc cgtttcattt tttacatata ttttaggacc accctg          1436
//
ID   Mariner-71_HSal repbase;    DNA;    INV; 909 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-71_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-909
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 916-916 (2014).
XX
DR   [2] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..776
FT                 /product="Mariner-71_HSal_1p"
FT                 /translation="MSDEKLYIRHCIRYEFQQGKNAAKACESICSVLGENI
FT                 VSHNTCKYWFRRFKDGDFDVSDRPRSGTPRKLEADNLEALLNENPSQTQVE
FT                 LAEQLGVDQATVSRRLHEMGKIQKLGKWVPHELSQNSIIRRLSTCVSLLSR
FT                 QRKKDFLSKIVTGDEKWIMYDNPKRRHSWVDPGQPSTSVAKPNIHSEKVLL
FT                 CIWWDAKGYVHQ"
XX
SQ   Sequence 909 BP; 292 A; 166 C; 194 G; 257 T; 0 other;
     ttaggtgtat gcaaaagttt tagtcttttt tcagccctct aatgtaatta ttttaaattg        60
     aaatattttc ccgccgtttt gtgtttttgt aaggttggta ttgaactttc taaaacgcca       120
     ttcattatga ttcattggtg cacataacct taaaaataac agttgataca atgagcgacg       180
     aaaaacttta tattcgacac tgcattcgat atgaattcca gcaaggaaaa aatgctgcta       240
     aagcatgtga atccatttgc tctgttcttg gggaaaatat tgtgtcccac aatacgtgca       300
     aatattggtt tcgtcgcttt aaagacggtg attttgacgt gagtgatcgt ccgcgctctg       360
     gaacgccacg aaagcttgag gccgacaatt tggaagcgtt gttgaatgaa aacccgtccc       420
     aaacgcaagt agaacttgca gaacagctcg gagttgacca agcaacagtt tcaaggcgac       480
     tgcatgaaat gggaaaaatt cagaagctcg gaaaatgggt gccgcatgaa ttgtcgcaaa       540
     acagcattat ccgccggttg agtacgtgcg tttcattgct ttccagacag cgcaaaaaag       600
     attttttgtc gaaaattgtt actggcgatg aaaagtggat tatgtatgat aatcctaaac       660
     gcagacattc gtgggtggac cccggacagc cttctacatc agtggcaaaa ccaaatattc       720
     acagcgaaaa ggtccttttg tgtatttggt gggatgcgaa aggttatgtg caccaatgaa       780
     tcataatgaa tggcgtttta gaaagttcaa taccaacctt acgaaaacac aaaacggcgg       840
     gaaaatattt caatttaaaa taattacatt agagggctga aaaaagacaa aacttttgca       900
     tacacctaa                                                               909
//
ID   Mariner-71_LMi repbase;    DNA;    INV; 1336 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-71_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1336
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 67-67 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1206
FT                 /product="Mariner-71_LMi_1p"
FT                 /translation="MADMKERAQVVWWYAETKSATQVQRNFRRVYNKAPPS
FT                 FKTIKKWCDQFLATGSVAKGHGGGKPGISEHHVEQVRRSFERSPQKSVRQA
FT                 ARELRMKRSTVHKVLHQRLRLYAYKVQVVQEIKPDDRPKREEFACVMLDRI
FT                 AADETFLSHVMFTDEATFHVSGAVNRHNVRIWGSETPQALREHMRDSPKVN
FT                 VWCGLMINRIVGPFFFQEPTVDGAIYLDMLEQFAVPQITDLQPNVMFQQDG
FT                 APPHWSLDVRKFLNDTFPQRWIGRGGPIPWPPRSPDITPLDFFLWGYVKDR
FT                 VYATPVKDLQDLKQRIRIVINSVTEQMLRNTWREIDYRLDILRATRGAHVQ
FT                 VY"
XX
SQ   Sequence 1336 BP; 361 A; 291 C; 340 G; 344 T; 0 other;
     cagggtgtcc acaatgagac tccaagattt taatatccta tatctttctc atttcagatg        60
     gtggacctgt gaatcctgaa ggggcagaca gagcaactca acaagtttgt ggtgtgcaaa       120
     tttgatacac caagtggccg tagtggagct gcaatcaatt gttttagcaa aatggcggat       180
     atgaaggagc gtgcacaagt ggtctggtgg tatgcagaga caaaatcggc gacccaagtg       240
     caaagaaact ttcgtcgagt ttacaacaaa gcgcccccgt cgttcaagac tataaagaag       300
     tggtgtgatc agtttttggc tactgggagt gttgcgaaag ggcatggtgg tggtaagcct       360
     gggatcagcg aacatcatgt ggaacaagtg cggcggtcat tcgaacgaag tccacagaag       420
     tcagtgcgac aggcagcaag agaacttcgt atgaaacgtt caacagtgca caaagtgctt       480
     catcagcgat tacgtttgta cgcatataaa gtgcaggttg tgcaagaaat caagcctgat       540
     gatcgaccaa agcgagaaga atttgcatgt gtcatgttag atcgcattgc cgcggacgag       600
     acatttttat cacacgtgat gtttactgac gaggcaacct ttcatgtgtc aggggctgtc       660
     aatcgtcaca atgtgcgcat ctgggggtcc gaaactccac aggcacttag ggaacacatg       720
     cgcgacagtc cgaaagttaa tgtgtggtgt ggtttgatga taaatcgcat tgttgggccg       780
     tttttctttc aggagccgac tgtggatgga gccatctacc tggacatgtt ggaacaattt       840
     gccgtgccac agataacaga cctgcagcca aatgtgatgt ttcaacagga cggtgcacca       900
     ccccattgga gccttgatgt ccgaaaattt ttaaatgaca cattcccgca acgatggatt       960
     ggccgtggag gtccaattcc ttggccgcca cgttcgcccg acataacccc cctcgatttt      1020
     ttcttgtggg gttatgtgaa agaccgagta tacgctacac cagtaaagga cctgcaagac      1080
     ttgaaacagc gcataagaat tgtcatcaac tctgtcacag aacagatgct ccgcaacaca      1140
     tggcgcgaaa tcgattatag acttgatatt cttcgcgcta cccgtggcgc ccatgttcaa      1200
     gtgtactgaa ccgtccacct gtgtatgaaa acttgatgag ctgctgtatg atttccctgt      1260
     atatgttcgt caataaattg tgtttcctct cagattttat gagttcaaat gttggagtct      1320
     cattgtggac accctg                                                      1336
//
ID   Mariner-72_HSal repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-72_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 917-917 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1198
FT                 /product="Mariner-72_HSal_1p"
FT                 /translation="MEIEKVHIRHCMLHYFHRGKSAAETSRIICETYGEHT
FT                 ISESTCQSWFQRFRSGNFDVNDKPRSGRPQEMKDEDLEVLLAEDAAQSSVE
FT                 LAKQLAVNHTTVLRRLHALGKIQKEGKWVPHQLSERAIGNRLNTCISLLAR
FT                 QKRKIFLWKIVTGDEKWIYYDNPKRKKEWLDPGQPSTSTPKRNIHAHKILL
FT                 CIWWDQKGVLYYELLKPGETITAERYSRQLFRLNEEIQKKRPWTGKGNRKV
FT                 ILLHDNARPHVASATKDTLLELEWEVLPHPAYSPDLAPSDFYLFRSMQNHL
FT                 SGVRFRNEIEIRKWVDEFISSKDASFFNRGIHLLPEKWSKVVASEGKYFD"
XX
SQ   Sequence 1277 BP; 395 A; 261 C; 280 G; 341 T; 0 other;
     ttaggtctgt gcataagttc ctggggttat gtttggatgg cgctgtaatc tgaatgcgca        60
     aacttttcaa ctaggttatg ttttacatta gtgctgttgg ttaacctgaa ttcgagctta       120
     catataacag ttcgtatttg tttacttaaa cacattttta atttaattga aaatggagat       180
     cgaaaaggtg catattcgac actgcatgct gcattatttt catcgcggaa aaagtgccgc       240
     tgaaacaagc agaattattt gcgagaccta tggtgagcat actatatctg aaagtacgtg       300
     ccaatcctgg ttccaaaggt ttcgaagtgg aaatttcgat gttaatgaca aacctcgctc       360
     tggacgacct caagagatga aagacgagga tttggaagtt ctactcgccg aagatgcagc       420
     tcaatcgtct gtggagcttg cgaaacagct tgccgttaat cacacaacag tacttcgacg       480
     cttacatgca ttgggaaaga tccagaagga agggaagtgg gtcccacatc aactatcgga       540
     acgagctatt ggcaaccggc tcaacacctg catctcactg cttgctcgac aaaaaagaaa       600
     gattttttta tggaaaatag taactggaga tgagaaatgg atttattatg ataaccctaa       660
     acgtaaaaag gagtggttag atccagggca accttctact tcgacaccaa agcgcaatat       720
     tcacgcacat aagattctcc tctgcatttg gtgggaccag aagggcgtgc tctattatga       780
     actgctcaaa cctggtgaaa cgattactgc agagcgctac agtcgccaat tgttccggtt       840
     gaacgaagaa attcagaaaa aaaggccgtg gacagggaaa ggaaatcgaa aagtcatctt       900
     gctccacgac aacgctcggc cacatgttgc ttccgcgact aaggacacct tattggaact       960
     tgagtgggaa gttctaccac acccggcata tagtccagat cttgcccctt cagattttta      1020
     cctatttcgg tcaatgcaga accatctctc cggtgtgcga tttagaaatg agattgaaat      1080
     acgaaaatgg gtcgacgaat tcatctcatc gaaagatgcg tcattcttca atcgaggaat      1140
     ccatttgttg cctgaaaaat ggtccaaagt tgtagcaagc gagggaaaat attttgacta      1200
     aacaagtatg tattgtttct ttaatataca taaactaagt ccgccaaaaa accccaggaa      1260
     cttatgcaca gacctaa                                                     1277
//
ID   Mariner-72_LMi repbase;    DNA;    INV; 1206 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-72_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1206
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 68-68 (2015).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(147..476,407..877)
FT                 /product="Mariner-72_LMi_1p"
FT                 /translation="MAARRELTDFERGMVVGARRMGHSISEIVREFSIPRS
FT                 TVSRVRREYQISGITSHHGQRSGRRPALNDREQRRLRRVVSANRQATLREI
FT                 TAEINVDVRRMYLLGQCGAIWRNNCRNQCGRTTNVSVRTVRRNLALMGYGS
FT                 RRPARVPLLTARHRLQRLSWACDHIGWTLDDWKTVAWSDESRFHLVRADGR
FT                 VECAQTPRSHGPKLSTRHCASWWWLHNGVGCFYMEWTGSSGPTEPIIDWKW
FT                 LCSATWRPFAAIHGLHVPKQRWNFYG"
XX
SQ   Sequence 1206 BP; 312 A; 274 C; 332 G; 288 T; 0 other;
     cactgggtga caaaagtcat gggatagcga tatgcacaga tacagatggc ggtagtatcg        60
     cgtgcacaag gtataaaagg gcggtgcatt ggcagagctg tcatttgtac tccggtgatt       120
     catgtgaaaa ggtttccgac gtgattatgg ccgcacgacg ggaattaaca gactttgaac       180
     gcggaatggt agttggagct agacgcatgg gacattccat ttcggaaatc gttagggaat       240
     tcagtattcc gagatccaca gtgtcaagag tgcgccgaga atatcaaatt tcaggcatta       300
     cctctcacca cggacaacgc agtggccgac ggcctgcact taatgaccga gagcagcggc       360
     gtttgcgtag agttgtcagt gctaacagac aagcaacact gcgtgaaata actgcagaaa       420
     tcaatgtgga cgtacgacga atgtatctgt taggacagtg cggcgcaatt tggcgttaat       480
     gggctatggc agcagacgac cggctcgagt gcctttgcta acagcacgac atcgcctgca       540
     gcgcctctcc tgggcttgtg accatatcgg ttggacccta gacgactgga aaaccgtggc       600
     ttggtcagat gagtcccgat ttcatttggt aagagctgat ggtagggttg agtgtgcgca       660
     gaccccacga agccatggac ccaagttgtc aacaaggcac tgtgcaagct ggtggtggct       720
     ccataatggt gtgggctgtt tttacatgga atggactggg tcctctggtc caactgaacc       780
     gatcattgac tggaaatggt tatgttcggc tacttggaga ccatttgcag ccattcatgg       840
     acttcatgtt cccaaacaac gatggaattt ttatggatga caatgtgcca tgtcaccggg       900
     ccacaattgt tcgcgattgg tttgaagaac attctggaca gttccagcga atgatttggc       960
     acccagatcg cccgacatga atcccatcga acatttatgg gacataatcg agaggtcagt      1020
     tcgtgcacaa aatcctgcac cggcaacact ttcgcaatta tggacggcta tagaggcaga      1080
     tgaatattcc tgcaggggac ttccaacgac ttgagtccat gccacgtcaa gttgctgcac      1140
     ttcgccgggc aaaaggaggt ccgacacgat attaggaggt atcccatgac ttttgtcacc      1200
     tcagtg                                                                 1206
//
ID   Mariner-73_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-73_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 918-918 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-73_HSal_1p"
FT                 /translation="MESQKVHIRHVMLWEFKQGNSAKATAEKICSVYGEGL
FT                 ITDRAVRNWFVKFRSGDTTLKDEPRAGRPSDFDDNLLKAILEQNPRQSTRG
FT                 IAERLNTSQSTVNRHLEKLGKVSKLGVWVPHNLSERNKEDRMSIATSLLSR
FT                 VKIEPFLNRIITGDEKWVTYDNIVRKRQWLDKDQPPLPDPKANIHGKKILL
FT                 CVWWDCRGIIHHELLKSNLTITADRYVQQLQRVQEKLHEKRPAFINRKNVI
FT                 LLHDNARPHTARVTQEKILELGWSVLPHPPYSPDLAPTDYHLFCSLQNFLN
FT                 GKTFNSEEQVSQAVENFFQSKPTTFYKEGIDKLPGRWEKVIHNSGEYIIN"
XX
SQ   Sequence 1287 BP; 431 A; 249 C; 268 G; 338 T; 1 other;
     ttaggtcgag tcataagtaa cttccgatgc agctaggtag aatctattgt tcgtatctac        60
     ccactatgag tcaccgggac aaacgagttt ttgttttcac tatatagatg agggttcagt       120
     tagtcttctg tcaactgttt tgtgtggtgc acgttacatt aaactgtttt tcttaasctc       180
     tgaaatggag agtcaaaaag tgcatattcg tcatgtaatg ctttgggaat ttaaacaagg       240
     caatagtgct aaggcgacag ctgaaaaaat atgcagtgta tacggtgaag gactaataac       300
     tgatcgggca gttagaaatt ggtttgtaaa attccgttct ggagatacga ccttaaaaga       360
     cgaaccgagg gcgggacgtc cttctgactt tgacgacaat cttttaaagg caatattgga       420
     gcaaaatcca cgtcaatcaa caagaggtat agcagaaagg ttgaatacat cacaatcaac       480
     tgttaaccgc cacctggaga aattagggaa agtcagcaag ttaggagtat gggtacctca       540
     caatctcagt gaacggaata aagaagatcg catgtcaatc gccacaagtc tgctctcacg       600
     ggtaaaaatc gagccttttt taaacaggat tataacaggc gatgaaaaat gggttaccta       660
     tgacaatatc gtccgcaaaa gacagtggct tgataaggat caaccacccc taccagatcc       720
     gaaagcaaac atccatggca aaaagatttt attgtgtgta tggtgggatt gtcgaggcat       780
     aattcatcac gagttgttga agtcaaattt aacgattact gcggatagat acgttcagca       840
     gctgcaaaga gtgcaagaga aactccatga aaagcgtcct gcattcatca atcgcaaaaa       900
     cgtcattctt ttacacgaca atgcgcgacc acatacagca agggtgactc aagaaaaaat       960
     tcttgagctt ggatggtctg ttttaccaca cccaccttac tccccggacc ttgccccgac      1020
     agactaccac cttttctgtt ccttacaaaa ctttttgaat ggaaaaacct tcaattctga      1080
     agagcaagtc agtcaggctg tcgaaaattt cttccagtcc aaaccaacca cattttacaa      1140
     ggaaggaatt gataaactgc caggaagatg ggagaaggtc atacataata gtggcgaata      1200
     cataataaat taatataatt ttgttattta atgaaagcaa aataaatgtc tgataaaaaa      1260
     acggaagtta cttatgactc gacctaa                                          1287
//
ID   Mariner-73_LMi repbase;    DNA;    INV; 1461 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-73_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1461
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 69-69 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..1265
FT                 /product="Mariner-73_LMi_1p"
FT                 /translation="MPRRSIPKFDRIRIVTLCQEGLSSREVSRRLGVNQSD
FT                 VVRTWRRYRDTGTVDDLPRSGRPKATTAADDRYLRISARRNPERNATMLNN
FT                 DFRAATGRRVSTQTVRNRLHDMQLHSRRPWRGPALTPRHHAARYRWAQQHA
FT                 EWTRQNWHQVLFTDETRICLQPDNRRRRFWRQPGQPERLRHTVQRVQQGGG
FT                 SLMFWGGIMWGHRTPLVVVEGNQTAIRYRDDILRRIVQPYRQHFGEGFVLM
FT                 DDNSRAHRAHLVNAFLHDNDIARLEWPACSPDMNPIEHAWDTLKRAVFGRD
FT                 DPPTNLRDLRRIAVEEWDNLDQQSLDDLVDSMPRRIQACISARGRVTGY"
XX
SQ   Sequence 1461 BP; 386 A; 341 C; 373 G; 361 T; 0 other;
     cacacataaa aaagtgttgc atcaccttgg ttccaaggtc tcctgaacac tgacgttgaa        60
     tgtgtatatt gcatcaagaa cacagttcct tagattgtcc atagatgtca ctcaacccgc       120
     acaaagatgt aaacaaccac gcatgagcag tgccaatgcg acggagtggg taagacggcc       180
     gatcagttcc agtcataaca ccaggaagga agtacactgc ttgtgttgac tgtagttctg       240
     ccatgcctag aaggtcaatt ccgaagtttg atcgtatccg cattgttact ttgtgtcagg       300
     agggactctc atcaagggaa gtttccagac gtctcggagt gaaccaaagc gatgttgttc       360
     ggacgtggag gaggtacaga gatacaggaa ctgtcgatga cttgcctcgc tctggccgcc       420
     caaaggctac cacagcagct gatgaccgct acttacggat ttcagctcgg aggaaccctg       480
     agaggaacgc caccatgctg aataatgatt ttcgtgcagc cacaggacgt cgtgtttcga       540
     ctcaaactgt acgtaatagg ctgcatgaca tgcaacttca ctcccgacgt ccatggcgag       600
     gtccagcttt gacacctaga caccatgcag cgcggtacag atgggcccaa cagcatgctg       660
     aatggactcg tcagaattgg catcaagtgc tattcacaga tgagactcgc atctgccttc       720
     aaccagacaa tcgtcggaga cgtttttgga ggcagcctgg tcagcctgaa cgtcttagac       780
     acaccgtcca gcgagtgcag caaggtggtg gttccctgat gttttggggt ggcattatgt       840
     ggggccaccg tacgccactg gtggtcgtag aaggcaatca aacggctata cggtacaggg       900
     atgacatcct ccgacgtata gtgcaaccat atcggcagca tttcggtgag ggattcgtct       960
     taatggacga caattctcgc gctcatcgtg cacatcttgt gaatgcgttc cttcatgata      1020
     acgacatcgc aagattagaa tggccagcat gttctccaga catgaaccct atcgaacatg      1080
     cctgggatac attgaaaagg gctgtttttg gacgagacga cccaccaacc aatctgagag      1140
     atctacgccg aatcgccgtt gaggagtggg acaatctgga ccaacagtcc cttgatgatc      1200
     tagtggacag tatgccacga cgaatacagg catgcatcag tgcaagagga cgtgttaccg      1260
     ggtattaggg gtactggtgt atgctgcaat ctggaacaca aattcagaat gtctaggtta      1320
     ttgtcgtaca acttgtcagt ttctgttttc atgagcaata aagagaactg aaatgttgtt      1380
     ttgtatatct ctattccatt tttatgtaaa gggtcatgaa cccctagaat cgtggtgatg      1440
     caacactttt tgtgatgtgt g                                                1461
//
ID   Mariner-74_HSal repbase;    DNA;    INV; 1295 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-74_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1295
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 919-919 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1295 BP; 404 A; 232 C; 275 G; 383 T; 1 other;
     cgtgggttgc tgcaaaagtt tcgggaatgt aaaacttcta gtgttgccag cttaccggca        60
     acactatttt cataaaattt gacaattttc atgctagagg gcgttgactg aacaaagaaa       120
     tgtcaattgg tttcgttttt atagcgtgtc aaagttgata aaaagtgaaa aaaatggatt       180
     taaatcgaga acattttcgt gcgatgattt tctacgattt tcggagtaat ttaactcaac       240
     aacagtgtat ggaacggctt gttgcggctt ttggtgatga agcaccatca aaaacaacaa       300
     tttatcgctg gtttcaagag ttcaaaagtg gacgtagcag tcttagtgat gattttcgtg       360
     aaggtcgtcc gccaactgct gttgttccag aaaacatcga tgctgttcgc gagatgatag       420
     agatggatcg gcatgtgaca taccgtgaga ttgagtcatc cctaaacatc gacatgaaac       480
     aaatacatac gatattgcac aaacatttga atgtaaagaa gctttgtgct cgttggattt       540
     tcctcacaat ttgaccgatg ctcaaaaaca gaaccgtgta aagtggtgca aggaaatgct       600
     aaaaaaattc agtggaggat cgtcaaatct ggtgtacaac atcgtcacag gtgacgaaac       660
     ttggatttat tcgtatgagc ctgaaactaa acgccaatcg gctgtttggg tctttcaaag       720
     tgaactgaaa ccaacaaaag ttgttcgttc tcgaagtgtt tamgaaaaaa atgatcgctt       780
     cattcttcgg ttttactggt catgttgcta ctgtggcttt agaagatcga agaacagtta       840
     atgctgtttg gtacacgaca gtttgtttgc cagaagtcat cggtgaaatt aggaaaaaca       900
     acgcgagaag acgaatcatc ctgcatcatg acaacgcaag ctctcacaca gcagctgaaa       960
     cggtcgatta tttgaagcgc caaaatatcg aattaatgtc tcattgtcct tatagccctg      1020
     atttatcacc taatgacttc ttcctgttcc ctatggtgaa gaataaaatg cgtggtcagc      1080
     gttttacaac gcctgaagag gctgtcgaag catataaatc gcatgttttg gctatacctc      1140
     gctttgaatg gaaaaagtgt ttcaaaaact ggtttgagcg tatgcaaaaa tgcataaatg      1200
     ttaaagagga atattttgaa aaacaataaa gccatttgtt caaatttttc tgtatttttt      1260
     ctcatacttt cccgaaactt ttgcagcaac ctacg                                 1295
//
ID   Mariner-74_LMi repbase;    DNA;    INV; 1313 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-74_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1313
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 70-70 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(509..724,562..933,937..1023,1027..1158)
FT                 /product="Mariner-74_LMi_1p"
FT                 /translation="MDDETILVMSDEAHFHLDGMSTNKIFAIGQTQTHKSY
FT                 MNAPGIVPXSXCGAXLLRSVLSGRTFLRKEGEXLRWYVNKQNFRYWSDTNP
FT                 QELHERPRHSSKXXVWCGVAKKCVIRPYFFEEGGRXVTVNQECYLRMLDTF
FT                 FIPELKRKRLGLKKILFQQDGATAHTENAVMGYLRRKFRGHVISCNGDIAW
FT                 PARSPDVFVTFSFGVTSNESVRKQTPYTRKLKRSYTSGWSISTDMLSKVFD
FT                 SFAARLEECMLKNGHHLHELSLNRPNVF"
XX
SQ   Sequence 1313 BP; 364 A; 250 C; 313 G; 381 T; 5 other;
     cagggagcgg cagaaatacc tgatagtttt tgttcgtgca cagtacggca gtcgtggaag        60
     gtgagtggtg gggagcgttc tcaaggccac tcgagggagt ttcagttgcc atggagcagt       120
     ggtcgggaga gcattgtgcg ttcgtcgttg agacgtattt taaaagtggt gattctttgt       180
     tgtcacacgt cagtttcgcc attttcatgt gggtaatacc atcaagttgt gggtcaagaa       240
     cttcaggtca actggttcaa cgttaaaaca aaagcckgga ggacgcccaa ggtcagtgag       300
     gaaacgttga tcgagtgagg caagctgtgt ccactagccc gcatcgaccc gtggtaaaca       360
     agctgctgct cttgcactgt ccgacggtca gtgagaagaa tattgcacgg ggatcacact       420
     ttcaccctta taaaattgca attgttcaac agtgaagcct catgactacg ctaatcgcca       480
     gagattttgt gaacaattaa ttgatttgat ggatgatgaa acaattcttg taatgagtga       540
     tgaggctcat tttcatcttg atggtatgtc aacaaacaaa attttcgcta ttggtcagac       600
     acaaacccac aagagttaca tgaacgcccc cggcatagtt ccaaastcas agtgtggtgc       660
     ggsgttgcta agaagtgtgt tatcaggccg tacttttttg aggaaggagg gcgaasagtt       720
     acggtaaacc aagaatgtta cttgagaatg ttggacactt tcttcattcc tgaacttaaa       780
     agaaaacgtc ttggtttgaa aaagatcttg ttccaacaag acggagcaac tgcccacaca       840
     gaaaatgctg taatgggtta tttgaggagg aagtttcgag gccacgtcat ctcttgcaac       900
     ggcgacatcg cttggcccgc tcgttccccc gactgagtgt ttgtgacttt ttcctttggg       960
     gttacctcaa atgaaagtgt acgcaaacaa accccataca ctagaaaact taaaagaagc      1020
     tattagacaa gtggttggtc tatatcaacg gacatgctga gtaaagtgtt tgacagcttt      1080
     gctgcgagac ttgaggaatg tatgctgaag aatggccacc acttacatga gttatcttta      1140
     aataggccta atgttttttg agactataca ttgttacata ttgttgttcg cagtgttttt      1200
     ttttattaat tgccgtcttt tactgttctt aatatataat aaatatgcaa aaatgtttat      1260
     aaacattgga gtattcttat ttaaaaaccg tcaggtattt ctgccgctcc ctg             1313
//
ID   Mariner-75_HSal repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-75_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 920-920 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1210
FT                 /product="Mariner-75_HSal_1p"
FT                 /translation="MENQKVHFRHVMLYCFKRGFTASQTLNEMFSVYGDAC
FT                 VTHQTVRKWYRRFEAGDFNMEDQARSGRPQEVDETLLMDLVHENPRVTVRE
FT                 LADTLHKSVSTVHDHLKKLGFSSRLDVWVPHEMNERQLLERVNVCDMLLQR
FT                 HQKEPFLKRIITGDESWILYNYVSRKRSWGTSDASTQTVAKPGLHAKKVLL
FT                 SIWWDFKGVVYYELLQPNETINAAKYSLQLDELKTAIARKRPELANRRGIV
FT                 FHHDNARPHVAMSIRRKLLDFEWDVLPHPPYSPDLAPSDYYLFLSLKNFLR
FT                 DKKFESLKVLKSHLDKFFANKKPLFWSKGIMQLPERWAKVVEQNGTYLLQ"
XX
SQ   Sequence 1287 BP; 366 A; 292 C; 286 G; 343 T; 0 other;
     ttaggttgtt cggaaagttc gtttcaaatt tcgcgcgctc cacatttcta tgtaatcagt        60
     aagaacgagg gcgctctaaa cgattttatg tttgtcaaca aacattcccg gatctatgag       120
     cccgctaagg aaacttcgca gatcttccta agtgcaacta tttcgtcaga aatcagtttg       180
     aaaaatggag aaccaaaaag tccattttcg tcatgtgatg ctatattgct ttaaacgtgg       240
     cttcacggct tcgcagaccc tgaatgagat gttctcagta tatggagatg cctgcgtcac       300
     tcaccagaca gttcgaaaat ggtatcgaag attcgaagct ggcgatttca acatggaaga       360
     tcaagctcgc tcaggccggc ctcaggaggt tgatgaaacg cttcttatgg atctcgtgca       420
     cgaaaatcct cgagtgacag ttagagaact cgccgacact ctgcacaagt ctgtttccac       480
     cgtgcatgac catctgaaga agctaggatt ctcaagtcga ctggatgtgt gggtgccaca       540
     cgaaatgaat gaacggcagt tgctggaacg tgtgaacgtc tgcgatatgc tgcttcaacg       600
     gcaccaaaaa gaaccgttct tgaagaggat cataacaggc gatgaaagtt ggatcctata       660
     caattatgtt agccgcaaga ggtcgtgggg aaccagcgac gcgtctacgc aaacagtggc       720
     caagccgggg cttcacgcga aaaaggttct tctgagtatc tggtgggatt ttaagggcgt       780
     ggtatattat gagcttcttc aaccaaacga aaccatcaac gcggcgaagt acagccttca       840
     actggacgaa ctgaagactg ccatcgcacg gaagcgccct gaattggcca acaggcgtgg       900
     aattgttttc catcatgata acgccagacc tcacgtcgca atgtctatcc gtaggaagct       960
     gttagacttc gaatgggacg ttcttcctca tcctccatat tctcccgacc ttgccccatc      1020
     tgactactat ctatttcttt ctttaaaaaa ttttcttcgg gacaagaaat tcgagtcttt      1080
     gaaagtcctc aaaagtcatc ttgataaatt cttcgccaat aagaaacctt tattttggag      1140
     caaaggcatc atgcagcttc ctgaaagatg ggccaaggtc gttgaacaaa acggtacata      1200
     tttgcttcaa taaagttcct ctttgtgtaa aatattgcgc tcttaattta tttcaaaaat      1260
     ttgaaacgaa ctttccgaac aacctaa                                          1287
//
ID   Mariner-75_LMi repbase;    DNA;    INV; 1319 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 20.01, Created)
DT   14-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-75_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1319
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 71-71 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(49..453,351..758,703..1065)
FT                 /product="Mariner-75_LMi_1p"
FT                 /translation="MGRWQHCGFVTASKQSAISVIMDQWNGQQCALAIKMF
FT                 YKNNDSLVAAQREFRHFYNLGRHDAVPSKHAIKCWINNFEETGSALKKKPT
FT                 GRPRSVRSPANIDVVSLSYGAHGVQFVSKQQWLECPGRVFAEFFILICCES
FT                 VLRSPRRSIRKQAAVVGMSRESVRRILHLDLKFHPYKLQMVQQLKDNDYRL
FT                 RLGFCQQMITKINNDDEFLNKLWMSDEAHFHLTGYVNKQNYRYWANTNPND
FT                 VHERPLHASKVTVWCGVSSHGIIGPYFFRKQYGVVFHHMGLSDRIFFANEQ
FT                 GNTTTVNADRYVEMLRTFVTPALNNFPNIQEAWFQQDGATSHTARQSMACV
FT                 RELFGNRVISRFGNIPWPPRSPDLSVCDFSFLVGLPQEQSLHDSTKNPG"
XX
SQ   Sequence 1319 BP; 394 A; 262 C; 305 G; 358 T; 0 other;
     cagggtgaca cagaataacg ggaatgtttg aaatgagtag tggcagccat gggcaggtgg        60
     cagcactgcg ggttcgtgac agcgagtaaa cagtccgcca tttcagtaat catggatcag       120
     tggaacggac aacagtgtgc gttagccata aaaatgtttt ataaaaacaa tgatagtttg       180
     gtagcggcgc agagggagtt tcgacatttt tataatttag gacgtcatga tgccgttccg       240
     tcgaaacacg cgataaaatg ttggattaat aactttgaag agactggatc tgccctcaag       300
     aagaaaccaa caggacgacc aagaagtgtg cgttctccag cgaacattga tgttgtgagt       360
     ctgtcttacg gagcccacgg cgttcaattc gtaagcaagc agcagtggtt ggaatgtccc       420
     gggagagtgt tcgcagaatt cttcatcttg atttaaaatt tcatccgtac aaactacaga       480
     tggtgcaaca attgaaggac aacgattacc ggttacgatt gggattctgt caacaaatga       540
     taacaaaaat aaacaatgac gatgaatttc taaacaagtt gtggatgtca gatgaggcac       600
     attttcatct cacaggttat gtgaataaac agaactaccg ttactgggca aacacaaatc       660
     ctaatgacgt tcatgagcgc cctttacacg ctagtaaagt gacagtatgg tgtggtgttt       720
     catcacatgg gattatcgga ccgtattttt ttcgcaaatg aacagggaaa cacaacaact       780
     gtcaatgccg atcgttacgt ggagatgtta cgaactttcg ttacacctgc attgaacaac       840
     tttccaaaca ttcaagaagc ctggtttcaa caggacggag cgacatcaca cactgcacgg       900
     caatcaatgg catgtgtgcg agaattgttc ggtaaccgtg tgatctcacg attcggtaac       960
     attccctggc ccccgagatc gccagattta tccgtttgtg atttttcttt tcttgtgggg      1020
     ctacctcaag agcaaagtct acacgactcg accaagaacc ctggatgagt taaaacagag      1080
     aattcgggat gaaattcaca gtatcccagc tgagatgttg cagcggtcaa tgaggaatct      1140
     ccacagcaga tttcacgaat gtattcgtac aggaggacgc catctaaagg acgtaatttt      1200
     ttttaaatga taaatggcaa agttgtaaga tttcaattac tatgaattaa atttctttcc      1260
     ttcatcactt ctagttttat tggattgtgg aaatgttccc gtttttctgt gtcaccctg       1319
//
ID   Mariner-76_HSal repbase;    DNA;    INV; 2232 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-76_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2232
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 921-921 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           690..1742
FT                 /product="Mariner-76_HSal_1p"
FT                 /translation="MAAYPPNEIVDMIRILGEARNNYSAAERLYAERFPDR
FT                 RHPDRKVIKRLCDRAEQGFLRRNRRKSGPDEVTSLTVIGAVALNPQISTRQ
FT                 IERQYGISKSTANRVLKLNKFHPYHIHLTQQLEERDYQRRVRFCNWARDQI
FT                 QQNPRFIADTLFSDEATFCNRGGVNRHNCHYYSDANPHWQRSQEFQRQWSI
FT                 NVWAGILGDVIVGPYFFEENLNAAIYLRFLQDDLPNLLRHVDNDLLRRMWF
FT                 QQDGAPAHRSRAVTQYLNNRFPNRWIGMGSRVQEWPPRSPDLTPLDFYFWG
FT                 YIRDIVYSQKPTTVENMKNRIRQACRNINVGVLEKVRDDFHHRLELCIQVN
FT                 GQVFEHFK"
XX
SQ   Sequence 2232 BP; 687 A; 434 C; 449 G; 662 T; 0 other;
     cagggtgtcc cattttaagt gtccacccca aatatctctc ttatttttta ttttagagaa        60
     aaatggttca gacacgtttt gtatggtttc gagggggcca taagatggta ccattgattt       120
     gaccttgaag agtcatttga aggtcacgtg aaggttacct caattttttt agatggcacc       180
     ccctattttt tattacatat tcttgtagct gacctcgaga gcttcccaaa acactataat       240
     caaatgtttt ttggtgaagt acttttcgag ttataaagct ccaaatttac aaaattttga       300
     taaaaataca aaatatttcg taaaacattc actttccgat agtcttatct tacatgatcc       360
     aaccagtcaa ggcaagatcc gagcatgatc caaccagtca aggcaagatc cgagcatgat       420
     ccaaccagtc aaggcaagat ccgagcatga tccagccagt caagacgaga tcctgtattg       480
     cctgataatc aatgaactgt aacaattgtg aaagtgcaat tgtcaattct tttaatgaaa       540
     caaatatcaa gaggcttgtt tcaaatttct tacttgggca actgtcggta ttttggcgaa       600
     gtctcagaca gacgcatatt attatccatt gacttttttt ttataagaca ggaatttttg       660
     gttttttggc gctttttttc tttataatta tggctgctta tccaccaaat gaaattgtgg       720
     acatgattcg cattttgggt gaggccagga ataattactc ggcagcagaa aggctttatg       780
     ctgaaagatt tccagacaga cgccatcctg ataggaaagt aataaaaaga ctctgcgaca       840
     gagctgaaca gggttttctt agaagaaacc ggcgaaaatc gggccctgat gaagtcacat       900
     cattgactgt tataggtgcc gttgctttga atcctcaaat ctctacgaga caaattgaga       960
     ggcaatacgg tatatctaaa tcaacagcca atcgtgtgct caagctcaac aagtttcacc      1020
     catatcacat tcatctaact cagcaattgg aagagaggga ctaccaacgc cgtgtacgtt      1080
     tttgtaactg ggctcgagat caaatccaac aaaatccccg gttcattgct gatacgcttt      1140
     tttctgatga agccacgttt tgtaatagag gaggcgttaa tagacataac tgccattatt      1200
     attcagatgc taatccacat tggcagagaa gccaagagtt ccaacggcag tggtccatta      1260
     acgtttgggc aggcatcctg ggagatgtta ttgttggtcc atattttttt gaagaaaatc      1320
     tcaatgcggc aatctatcta agatttcttc aagatgacct gcccaacctc ttgagacatg      1380
     tcgacaatga tttactcaga cgaatgtggt tccaacaaga tggagcaccg gctcatagat      1440
     ctcgagctgt tacacaatat ttaaacaata gattcccgaa taggtggatt ggtatgggca      1500
     gccgagttca agaatggccc ccaagatcac ccgacttgac acccctagat ttttatttct      1560
     ggggctacat tagagatata gtttattcgc aaaagcctac aaccgttgaa aatatgaaaa      1620
     accggatcag acaggcttgc agaaatatta atgtaggtgt tcttgaaaaa gttagggacg      1680
     actttcacca tagactagag ctatgcatac aagtaaatgg ccaagttttt gaacacttta      1740
     agtaattgta cacaaaagaa gatcttgcct tgactggctg gatcatgctc ggatcttgcc      1800
     ttgactggtt ggatcatgct cggatcttgc cttgactggc tggatcatgc tcggatcttg      1860
     ccttgactgg ttggatcatg taagataaga ctatcggaaa gtgaatgttt tacgaaatat      1920
     tttgtatttt tatcaaaatt ttgtaaattt ggagctttat aactcgaaaa gtacttcacc      1980
     aaaaaacatt tgattatagt gttttgggaa gctctcgagg tcagctacaa gaatatgtaa      2040
     taaaaaatag ggggtgccat ctaaaaaaat tgaggtaacc ttcacgtgac cttcaaatga      2100
     ctcttcaagg tcaaatcaat ggtaccatct tatggccccc tcgaaaccat acaaaacgtg      2160
     tctgaaccat ttttctctaa aatcaaaaat aagagagata tttggggtgg acacttaaaa      2220
     tgggacaccc tg                                                          2232
//
ID   Mariner-76_LMi repbase;    DNA;    INV; 1436 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 20.01, Created)
DT   14-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-76_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1436
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 72-72 (2015).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(91..261,201..407,397..1248)
FT                 /product="Mariner-76_LMi_1p"
FT                 /translation="MRVLGHLATAPSPALLSSGRNTVLLCSVLRDRVFCFE
FT                 FAVEFPFSMVYTKDQECFLCVCCRVSFQYGIHEGSRVFLVLNYAKTESYVE
FT                 CRLEFIRKFPGVHVPNESTIRRLVKKFQKTGSVLDEKATKRPRGGSVLTEN
FT                 KLDEIGEALEKSPRKSLRRLALQTGVSRASAHRAVHKLNLKPYKITVVHQL
FT                 TNSDTVARRRYCNWLLQSVHDGEVDPEMLYFSDEAWLHLSGYVNSQNNRRW
FT                 SSENPHELHQQPLHDVKTGVWCAISARRIIGPIFFHETINSDRYVNNILHP
FT                 FFQELSPNEKLYGYFMQDNARPHIANASMAAIRSVFDDRIVDWPPRSPDLN
FT                 PCDFYLWGMLKDKVYASNPHTLEELEDRIRLVISQISAAEIRRVFANVFKR
FT                 CQAALSIEGHHFEHLL"
XX
SQ   Sequence 1436 BP; 374 A; 315 C; 372 G; 375 T; 0 other;
     cagggtgtct cacgaaagac gcctgggaga ggtccgcgag ttgcgcggcg cgtttgccgg        60
     ctgctgccgc tccgcctgcc ggtcgccgct atgcgtgttc tgggacactt ggcaacagcg       120
     ccgagtccgg ccctattgtc gtcaggtaga aacaccgtgc tcttgtgttc tgtactgcgt       180
     gacagagtgt tttgttttga gtttgctgtc gagtttcctt tcagtatggt atacacgaag       240
     gatcaagagt gtttcttgtg ctgaactatg caaaaacaga atcgtatgtg gaatgtcggc       300
     tagaattcat acggaaattt cccggtgtgc atgttcccaa tgaatccacg atacgcagat       360
     tagtgaagaa atttcaaaag actggatctg tgttagacga aaaggcctag aggaggtagt       420
     gttctaaccg aaaataaatt agacgagata ggggaggcct tggaaaaaag cccgagaaaa       480
     tctcttcgcc gtttggcact tcagacgggt gtgtcaagag catctgctca cagagcagta       540
     cacaaactga atttgaagcc gtacaaaata acggtagtgc atcaactcac gaactcagat       600
     actgttgctc gacgtcgtta ctgtaactgg ctgttacagt ctgtgcacga tggggaagtt       660
     gatcctgaga tgctttattt ttctgatgaa gcatggctgc atttgtcagg ctacgtaaat       720
     tcgcagaaca atcgacgttg gagctcagaa aatccacatg agttacatca acaacctctt       780
     catgacgtga aaactggagt gtggtgtgca attagtgcga ggcgaataat tgggccaatc       840
     ttttttcacg aaacaataaa ttctgacagg tatgtgaaca atatcctgca tccatttttt       900
     caagaacttt cacccaacga aaagctgtac ggttatttca tgcaggacaa tgcaagacca       960
     cacattgcca atgcttctat ggcagcaata cgaagtgttt ttgatgatag gatagttgac      1020
     tggcctcctc gttctccaga tctaaatccc tgtgactttt atctttgggg aatgttaaaa      1080
     gacaaggtgt atgcaagcaa tccccataca ctcgaagagt tggaagacag gattcgacta      1140
     gtcatttccc agatttcggc agccgaaatt cgtcgagtgt tcgcaaatgt gttcaagaga      1200
     tgtcaggccg ctctttccat agagggacat cattttgaac atctactgta aataaaggta      1260
     agcttaggtt actcagatgg caatgttttt tagactttaa ctcagtgtat gcgcccgcgg      1320
     cacaatagag tccgagaatc gggcgctgcc gtggccggcg gatgcggtgg cggcggccgg      1380
     gagccgtacc gcgcgatccg cggacgcctg gcaggcgtct ttcgtgagac accctg          1436
//
ID   Mariner-77_HSal repbase;    DNA;    INV; 2527 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-77_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2527
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 922-922 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1036..1935
FT                 /product="Mariner-77_HSal_1p"
FT                 /translation="MAELSERDRITLLMMRGWGDQQRGYKTVTRLFNENFR
FT                 NENNRISKSTVIRTIQRFEDIGSVKSRPRSGRRKTATNNDKALDVLQSFVE
FT                 SPHISINRVAQEHEIGHASVSKILKLNKWHPYKLHLVQELSEDDFDRRIEF
FT                 CDLMMEMIVDDPLLLNNIVFSDEATFELTGNVNRHNCRYWSDVNPHWKRDN
FT                 HTQYPQKVNVWAGILNGRPVGPFFIEGNLTAQVYTVMLREQIVPAIRDIAG
FT                 GNMDEIYFQQDGAPPHYGVIVRQYLNEVFQDRWIGRRGHIEWPPRSPDLTP
FT                 LDFFCGVT"
XX
SQ   Sequence 2527 BP; 795 A; 465 C; 499 G; 767 T; 1 other;
     cagggtcatc gaaaagtatc ggacccccct aatatcttca gttagaatgc attttggaga        60
     aaatgtccaa tagcaaagtt gtatggtttc aagcggggag taagatgatg accttgactt       120
     tgaccttgac catgtccttc aaggtcattt caaggtcaac cttatttttt taaatggaac       180
     ccccaacatt ttattgcata ttcttatagc ttatctcgag agctttccaa aacactataa       240
     taaaacattt tttcattaag tactttttga gttataaagg tttgaagtta acaatttttt       300
     gacacaaaat gtaaaatatc ttgtaaaata ttatttagtt ttcagtaatc ataaccttaa       360
     tacttttgtg cgcgaaataa tgagaccaat taattggttt aaagaaaata cattaatcga       420
     aaagtatcgg mtccccctaa tattttcagt aagaatgcat tttggaaaaa tgtccaatag       480
     caaagttgta cggcttcaag cggttatgct agtaggctat ggcggaaaac tgcccgaagg       540
     tgatcgcgag aagctgctcg aatgcgtgat gtccgaaggc gttagcggga atctgcccga       600
     aagcgttggc ggggccgatc tttattgtct cactctcgca ggcaccaata gtaatacaag       660
     ctcttgagca aacaatgcgg atcactgatt tgaatctttg atgcagtgct gtcttcttct       720
     tagcgagcag cagtcacctc gtggacgaaa acgaacagcc ccaaaaattg tttctgtaac       780
     aaaagaagcc attgcgcttc aattgattgt cccaaacatc ttcattttgt ttccaatagc       840
     ccagaatttt ttcgtaaata ttattaattg atctattaga ttttcagttg ctcaacgagc       900
     tttttgctag tgctggttga aataaacaaa tcgatagttg gaccaacact taataattag       960
     tatttttctc tacttaatta tttagatcaa tttcctatca cttacctgat taattcttct      1020
     ttgctctaat taagaatggc ggagctttct gaaagagatc gaataacact gttaatgatg      1080
     cgaggatggg gagatcaaca aagagggtat aaaacagtaa cgcgattatt taatgaaaat      1140
     tttcggaatg aaaataatag gatctccaaa agtactgtaa tccgtactat tcaacgtttc      1200
     gaggacattg gtagcgttaa aagccgccca agatctggta gacgtaaaac agcaacaaat      1260
     aatgataagg cattagatgt tttacagtct ttcgttgaaa gtccccacat ttccatcaat      1320
     cgcgttgcac aagaacacga aatcggtcat gcatctgtca gtaaaattct gaaattgaat      1380
     aaatggcatc catacaaact ccatttggtc caagagttgt ccgaagacga ttttgataga      1440
     cgcatcgaat tttgtgatct tatgatggag atgattgtcg acgatcctct attacttaat      1500
     aatattgttt tctctgatga ggcaacattt gaactgactg gaaatgtaaa tagacacaat      1560
     tgtagatact ggagtgacgt taatcctcac tggaaaagag acaatcatac ccaatatcca      1620
     caaaaagtta acgtatgggc tggtattctt aatggtagac cagttggccc tttcttcatt      1680
     gaaggcaatt tgacagcaca agtatacaca gtcatgcttc gcgaacaaat tgttccagct      1740
     attcgagaca tagctggtgg aaatatggat gaaatttatt tccaacagga tggagctcca      1800
     cctcattatg gtgtcattgt ccgtcaatat ttgaatgagg tctttcagga caggtggata      1860
     gggcgaaggg gtcatattga gtggccacct cggtctccgg acttgacccc acttgacttt      1920
     ttttgtgggg ttacttgaaa agtaaagttt atgccaccaa gcctcaagat ttagatgatt      1980
     taagagggag aataactcga gagatagaac taataccgcc ggaaacgttc cggaatgcgg      2040
     tttcagctgt ttataacaga ttggcacatt gccaggctgt tgaagggcaa caatttgaac      2100
     atttgttgtg aattgtttgg tacaattgaa tattttgccc aagctgacca attggaatga      2160
     aatttgcctt aactggtcgg aatcacacac cactcttgcc ttaactggcc ggaatcacac      2220
     accacttaac aaattgttaa cttcaaacct ttataactca aaaagtactt aatgaaaaaa      2280
     tgttttatta tagtgttttg gaaagctctc gagataagct ataagaatat gcaataaaat      2340
     gttgggggtt ccatttaaaa aaataaggtt gaccttgaaa tgaccttgaa ggacatggtc      2400
     aaggtcaaag tcaaggtcat catcttactc cccgcttgaa accatacaac tttgctattg      2460
     gacattttct ccaaaatgca ttctaactga agatattagg ggggtccgat acttttcgat      2520
     gaccctg                                                                2527
//
ID   Mariner-77_LMi repbase;    DNA;    INV; 1102 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 20.01, Created)
DT   14-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-77_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1102
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 73-73 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           135..869
FT                 /product="Mariner-77_LMi_1p"
FT                 /translation="FGNLPIALVANMASSGAERAFCVLEFDKNKCATAVQR
FT                 MFRTKYGKKPPTRKAIYHWHNKFVTTGCLCPAKRSGRPSVSEVNVERVRET
FT                 FIRSPKKSVRRASRELEMAPMTVWKVLRQKLSMKPFKLELVQKLNDDDKDK
FT                 RFEFCSQLQQLNEDGDGIVDRLIFSDEATFHTNGKVNRHNCRIWGTKHPHE
FT                 CIEFERDSPKVNVFCALSRRKLYGPFFFAESTVTGYSYLDMLQPLECVSRY
FT                 TTVP"
XX
SQ   Sequence 1102 BP; 311 A; 230 C; 270 G; 291 T; 0 other;
     cagggtgtac ataaagtccg ggaacacttt caattattta ttgcacaaga accaaacatt        60
     gtacagatat catacatatg tcattttgaa gagaaaccct gaaagttttt ttcatgtata       120
     ccgccacagc gtagtttggt aatttgccga tagcgctagt cgcaaacatg gcgagttcag       180
     gtgcggagcg agctttctgt gtgttggagt tcgacaaaaa caagtgtgct acagctgttc       240
     aacggatgtt tagaaccaag tacggtaaga agccaccaac aaggaaggcc atttaccact       300
     ggcacaacaa attcgttacg acgggttgct tgtgcccggc aaagagaagc ggacgtccca       360
     gtgtgagtga agtgaatgtg gagcgcgtac gagagacatt cataaggagt ccaaagaaat       420
     cggtgcgtcg tgcatcccgt gaactcgaaa tggctccaat gacagtgtgg aaagtcctgc       480
     gacagaagct gtctatgaaa ccattcaaat tggagctagt gcagaagctc aatgacgacg       540
     acaaagacaa gcgttttgag ttttgttcgc agttgcaaca attgaatgag gatggggatg       600
     gcattgttga tcgcttaatt tttagcgacg aagccacttt tcacactaat gggaaagtga       660
     acaggcataa ttgtcgaatc tggggtacaa agcatccaca cgaatgcatt gaatttgagc       720
     gtgattcccc aaaggtaaat gttttttgtg ccttgtcacg tcgaaaactg tacgggccat       780
     tcttcttcgc cgagagcact gtcactggat attcctactt ggacatgttg cagcctcttg       840
     agtgtgtttc ccggtacacc actgtgccat gagtgttgcc tgtcgacagg ggccgctcca       900
     tggccggtat agcacctgaa ctcgccatgt ttgcgactag cgctgactat cggcaaatta       960
     ccaaactacg ctgtggcggt atacatgaaa aaaaaaactt tcagggtttc tcttcaaaat      1020
     gacatatgta tgatatctgt acaatgtttg gttcttgtgc aataaataat tgaaagtgtt      1080
     cccggacttt atgtacaccc tg                                               1102
//
ID   Mariner-78N1_HSal repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-78N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-578
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 923-923 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 578 BP; 167 A; 117 C; 126 G; 168 T; 0 other;
     cgaggtttga tcaaaaagta acgagaattt tgaaattgcg cgcgctgtat cttgtctatt        60
     cagttgattc tttttttgtg tgttggtagc actaccagtg acgtacgtgt caattttcag       120
     gcagctgcga cgcttagttt gtgtttggcg agcgaatgag caagacgtac ttcagtgtgt       180
     ttggcgattt tttgtgtggc gaaatcagtc ggatcagaga gcataccgct ttgcttatcc       240
     aacagttctt ggcgaaacac aacaccgttg tgatgccgca accaccttat tctccagaca       300
     tggccccctg tgactttttc ctatttccca aactcaaaag gacactcaaa ggacaacgtt       360
     tttcaacaat agatgagata aaggcgaaat cgcagatcca gctcaagacg atacctaaag       420
     aggcgttcca ccagtgtttc tcaaactgga aactacgttg gcataagtgt ataatatcac       480
     agggggacta ctttgaagga gatgggataa acattgaaga ttaaataaat actttccgag       540
     aaaattaaaa attctcgtta ctttttgatc aaacctcg                               578
//
ID   Mariner-78_HSal repbase;    DNA;    INV; 908 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-78_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-908
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 924-924 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..851
FT                 /product="Mariner-78_HSal_1p"
FT                 /translation="RFDQKVTRILKLRALYLVYSVDSFFCVLVALPVTYVS
FT                 IFRQLRRLVCVWRANEQDVLQCVWRFFVWRNQSDQRVCLKFCVKNGIKCSE
FT                 AFKMLKKAFGDDTMSQPRVYEWYKRFQEGREDIEDDARSGRPSTSTSDENV
FT                 EKVKEIVLANRRITIREVAEEIGISYGSCEAIFTNVLNMKRVAAKFVPKLL
FT                 NFQQKQHRVTIAKPPYSPDMAPCDFFLFPKLKRTLKGQRFSTIDEIKAKSQ
FT                 IQLKTIPKEAFHQCFSNWKLRWHKCIISQGDYFEGDGINIED"
XX
SQ   Sequence 908 BP; 285 A; 167 C; 207 G; 249 T; 0 other;
     cgaggtttga tcaaaaagta acgagaattt tgaaattgcg cgcgctgtat cttgtctatt        60
     cagttgattc ttttttttgt gtgttggtag cactaccagt gacgtacgtg tcaattttca       120
     ggcagctgcg acgcttagtt tgtgtttggc gagcgaatga gcaagacgta cttcagtgtg       180
     tttggcgatt ttttgtgtgg cgaaatcagt cggatcagag agtttgtctg aaattttgtg       240
     ttaaaaacgg aattaagtgc agcgaagcgt tcaaaatgtt aaagaaggcc tttggcgacg       300
     atactatgtc acaaccacga gtttatgaat ggtacaaacg ctttcaggaa ggccgagaag       360
     acatcgaaga tgacgcgagg tctgggcgtc ctagcacgtc caccagtgat gaaaacgtgg       420
     aaaaagttaa agagattgtg cttgctaata gaagaatcac cattagagag gttgctgaag       480
     aaataggaat ttcatacggc tcatgcgaag cgatttttac taatgttttg aacatgaaac       540
     gagtggcagc aaaatttgtt ccgaaactgc tgaattttca acaaaaacag catcgcgtaa       600
     ccatcgcaaa accaccttat tctccagaca tggccccctg tgactttttc ctatttccca       660
     aactcaaaag gacactcaaa ggacaacgtt tttcaacaat agatgagata aaggcgaaat       720
     cgcagatcca gctcaagacg atacctaaag aggcgttcca ccagtgtttc tcaaactgga       780
     aactacgttg gcataagtgt ataatatcac agggggacta ctttgaagga gatgggataa       840
     acattgaaga ttaaataaat actttccgag aaaattaaaa attctcgtta ctttttgatc       900
     aaacctcg                                                                908
//
ID   Mariner-78_LMi repbase;    DNA;    INV; 2472 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 20.01, Created)
DT   16-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-78_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2472
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 74-74 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(487..906,910..1062,1010..1534,1483..1746,
FT                 1734..2180)
FT                 /product="Mariner-78_LMi_1p"
FT                 /translation="MPKFKERSTNRGKWDENKMKEAVKCVMEGNLSVRQAA
FT                 DRYDVPRSSLHDRLKCLKSGKETDFQPKLGRFVATFSGNFSKQLYEHVKEL
FT                 DNRLMPLSRNEFLKLAFDLAEALKIPHRFNKEKRMAGKDFFIVLEKNIQTL
FT                 FELQNRPALHELLDSINHKLTVSLTSLITSKRNINFLLSYLQRRRNRGIKC
FT                 AISSSRIYNADETGVSNVHKNGKVISVKGKKQVGKLTSAERGRNITLTFAM
FT                 NVTGHFIPPLFIFPRKKMDRDGRLMIGSPPESIAVAHESGWMNGDVFLQWL
FT                 QHFEQHVQPTETNPVLLILDGHASHKELTVIEYARRHHIHMLSTPPHTTHK
FT                 LQPLDRTFLNLLRLHLQLQVQHGNIFKPFKAAFAAASSTWMRRNPAARITD
FT                 YDIAALVNEAFSKAARLDIAQNGFRCTGIYPFDPQTFADIDFLPSLMTDVA
FT                 PEVYEENIPGKYSLTEDSFASPVPSTSHAFRATEPVPTTTTAEVLKQLSPL
FT                 PDASKRRLVTRGRKTQKSEILTSSPYKKGVEERQKSKCNKKEEPKKQKGKK
FT                 MVKALKKHPRQRQIFKVPPKRIKEKRRNASSVEKPSKKTGFSAMSARTGPM
FT                 KTVFT"
XX
SQ   Sequence 2472 BP; 826 A; 458 C; 517 G; 671 T; 0 other;
     ggggaaggtc gggtagcccc ggacggcggg taaccgcgga catttcaatt tctaagaaac        60
     caagcacgtt gcgttggcaa gactgcattt gaaatacgcg ccctgtggag taaaaacata       120
     tgcaagtcgg ttgcggcata ggcgccaagc gagctactcg cagctgtgaa gtttgttcgt       180
     ggcaacaaat tttcgtcgct cctgttaaac ttcgttggcg attttcacca gttaaaagta       240
     agtgtttgta catgtttatc atttcaagtg gtaggaaatt tcatatattt aaagtctgtt       300
     ataatatttg taacatttct cgtacaattt aagagctgag tgtaaaaata ttacacgaca       360
     acaatcgggt agccccggac acaataatgt cgggtacctc cggacattgt ttgatgtttt       420
     taatttcgct tactatttat gcaaagtaat ttacaattgg gtttctattg caggaagact       480
     tgaaatatgc cgaaatttaa ggaaagaagt actaatagag gaaaatggga cgaaaataaa       540
     atgaaagaag cagttaaatg tgtgatggaa ggaaatttat cagtaagaca agcggcagac       600
     aggtatgacg taccaagaag ctcacttcac gatcgcctga aatgtttgaa aagtggcaaa       660
     gagactgatt tccagccgaa gttaggacga tttgtagcca cattttctgg gaacttttcc       720
     aaacaacttt atgagcatgt taaggaactt gacaaccgac tgatgccact gagcagaaat       780
     gagtttttga aattagcatt tgatcttgcg gaagctctca aaatccctca tagatttaat       840
     aaagagaaga gaatggcagg aaaagatttt tttatagttt tagaaaagaa tatccagaca       900
     ttgttttaag aactccagaa tcgaccagca ttgcacgagc tgttggattc aataaaccac       960
     aagttgactg tttctttgac cagcttaatc acctccaaga gaaatataaa tttcctcctc      1020
     tcgtatttac aacgcagacg aaacaggggt atcaaatgtg cataaaaatg gtaaagtcat      1080
     ttcagtaaaa ggtaaaaaac aagttggcaa attaacatct gctgaaagag gacgaaacat      1140
     cacactaact tttgctatga atgtcactgg tcatttcata cctccacttt tcatttttcc      1200
     tcggaagaaa atggacagag acggtcgctt aatgatagga tctccgccag aaagtattgc      1260
     tgttgcacat gagagcgggt ggatgaacgg agatgtgttt ttacagtggt tgcagcattt      1320
     tgaacagcat gttcagccaa cagaaacaaa tcctgtgctc ttaattttgg atggccatgc      1380
     tagtcataaa gagttgacag taatagaata tgcacgtaga catcacattc atatgctgag      1440
     cacacccccg catacaactc ataagttaca gccactggat agaacatttt taaacctttt      1500
     aaggctgcat ttgcagctgc aagttcaaca tggatgagac gaaatcctgc ggctagaatc      1560
     actgactatg atattgctgc acttgtgaac gaagctttta gcaaagcagc taggcttgac      1620
     atagcgcaaa acggattcag atgcacagga atttatcctt tcgaccctca gacctttgct      1680
     gatatagatt ttttaccgtc attgatgaca gacgttgctc cagaagttta tgaggaaaat      1740
     attccttgac agaagacagt tttgcatcgc cagtgccctc cactagtcat gcatttcgtg      1800
     caactgaacc ggtgcctaca accaccacag cagaggtttt aaaacagttg tcaccacttc      1860
     ccgatgcttc aaaaagacgt ttagtcacac ggggtcgaaa aacacaaaag agcgagattt      1920
     taacgtcatc tccatataaa aaaggtgtag aagagagaca gaaaagtaaa tgcaataaaa      1980
     aggaagagcc gaaaaaacaa aaaggtaaaa aaatggtaaa ggcactaaag aaacatccaa      2040
     gacaaagaca aatattcaaa gtccctccga agaggatcaa ggaaaagaga cgaaatgcat      2100
     catctgtgga gaaaccttcg aagaagactg gattcagtgc tatgagtgca aggactgggc      2160
     ccatgaagac tgtgtttaca tagatccttc cgatatttat tattactgtg atgtttgcaa      2220
     ggacaagaaa caactgcagc accactgaat gctgtgtccg gggctaccct ccatcttttg      2280
     taatgccaac aaactaattc aaaagtaatt ttaatatagt tcataaaaga attgttatgt      2340
     atactttgtt ttaagaaata tgattaaaga agttactggt ttcattttac agtgaaaata      2400
     aagacagaaa aatgttttat tgttgtttta tttgaaattc atttatgtgt ccgtggctac      2460
     ccgaccttcc cc                                                          2472
//
ID   Mariner-79B_HSal repbase;    DNA;    INV; 2388 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-79B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2388
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 925-925 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. The 5'-end is not determined.
XX
SQ   Sequence 2388 BP; 661 A; 584 C; 474 G; 666 T; 3 other;
     tcwcttgtac cttaacggcg ttcgttgcca tcggtttttt gcccgaacac gaacagtaaa        60
     taacaattaa cattttccta ctcaaattgg tcgattatgg ctacgattac tcttgaagtc       120
     gctgctcaag ttatggcgtt aattgaagat gggagaagtc gcagatacgt tgctcagtca       180
     cttgacttat cggtgtcagc cgtacaacgt gcttacacta ggtacttaga gaccaattcc       240
     ttccagcgaa gatccggttc gggacgtccc cgtattaccg atgagaggga tgaccgattt       300
     attgttttaa attcactaag aaatcgtcat caaactgctg ttcaaattcg aaacagttta       360
     aaggacgtcc gccataataa cgtgtgcgtt aacactgttc ggaatcgatt gagggaaaac       420
     ggcctttttg cacgaaggcc agcaggtgta ccttcgctta cgcgtcacca tcgcgtagct       480
     cggctcgatt ttgcagtcaa ccatagacat tggacgtatg cagattggag taacgttctt       540
     tttagcgatg agtctcgttt tgctctgttc tctccagatg ggcgagaacg ggtttaccgt       600
     cgagttggag aacgctttgc agattgcaca gtgagtgaac gccacagcta caacagaggt       660
     tctatcatgg tttgggcagg aatatctgcc aatgctcata cggatttaca ttttttccag       720
     cgaaatatga acgcagatgt atacgtagag gaagtattga taccccacgt tattccgtat       780
     gcgcctttca ttggagagac tttcatattc atgcaagata atgcgcgacc acacgttgca       840
     agaagagtac tggatttctg cagcgcccgg ggaagtaggc atcaatttac tcgaatggcc       900
     agctatgagt ccagacttaa atcccattga acatctttgg gacaatctcg gcagaaaagt       960
     acgcaatcat gtacctgctc cacaatcatt gccagaactt cgaagagttc ttgaaattga      1020
     atggggtaac attacccagg ccgaaattca aacggtcata aggagtatgt cctcgtcgca      1080
     tggaggaagw aatccgtgca agaggtgggc agcacacacg ctactaatac agtatcctct      1140
     ccccctctct ctctctctct ctctccccac tcctctctcc ccctctctct ctccctctct      1200
     ctctctctct ttctctctct ccctctctat ctctctctct ctcttacata cacacacacg      1260
     cacgcgcaca cgccgcaagg agggtttgga gtcgtgaaat accgtggagt tgacgagcca      1320
     cggggtcctt atccttggaa tgaacacaca cacgcgcacg cagcgcgcac acacacacac      1380
     gcatacatga cgcatgcctc accgcgcgcg tacacacgca cacacacacg cacacgcgca      1440
     cgcacacgca tacgcgttaa tgcgtgcata cacacacgaa attcacgcga cacaagtctt      1500
     atctaataca tacatacaca cacatgcggc acacgcacac acacacgcgc acacacacgt      1560
     acacgcacac acgcaccgtg cgcacgcacc acacatagca cacaaccasa aggacggttt      1620
     ggagtcttaa aatattacgg tgctagcgaa caacggaatt cttattcttg taattcgacg      1680
     ttgttacaaa ttcaaaattg aatatcttag tacctaatac agctagcaat atcttacaag      1740
     agcattttaa aggttcggat ttctactttt cgaaatttta tatcgcaatt atgtccgata      1800
     actttcttca aaatggcggt tgatgaagcg aaagcaagca caattggaaa ataatggtcc      1860
     gagtttgcga cggcacaagg cgagagtcaa gtctcgcaac tcaatcggat aaaaagcatg      1920
     tgatagtaca gagtctcctc tttaaaatgc ttttttaatc gtgtcgatac gatgattttt      1980
     cgccgaatta ttcacatttg aagaaaaaag cagtgtttta ctttaaatgc gaattattcg      2040
     gcgacaaatc atcgtatcga aacgattaaa aaagcatttt aaagaggaga ctttgtacta      2100
     tcacatgctt ttgatccgat tgcgttacga cacttgactc tcgccatgtg ccgtggcaaa      2160
     ctcggacaaa tatttttcaa tttcgcatgc tctcgctttg tcatccgcca ttttcaataa      2220
     atttttctcg ctacattgaa ataaatcgat tctttaatta gagattccaa gctttatttt      2280
     cattttttaa agacctttct atctttatta tttaccaagt tatgatcatt tgaagtttgg      2340
     taaatttttc ccacatttta agtgtaccgc ttttttttgg agtgagtg                   2388
//
ID   Mariner-79_HSal repbase;    DNA;    INV; 3813 BP.
XX
AC   .
XX
DT   23-APR-2012 (Rel. 19.04, Created)
DT   23-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-79_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3813
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 926-926 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1544..2560
FT                 /product="Mariner-79_HSal_1p"
FT                 /translation="MATINPEKAAQVIALIEDGRSRRYVAQALDLSVSTVQ
FT                 RAYARYLQTNSFHRRPGSGRPRCTNHNDDRFIVSNSLRDRHRTSVQIRNNL
FT                 RDVRNINVSVNTVRRRLKEQNLLSRRPAAVPLLKCHHRVARLNFAVEHRDW
FT                 TYADWSKVLFSDESRFCVYSPDGRERVYRRGGERFADCTVSERHSYNGGSV
FT                 MIWAGISANAHTDLHFFDKNMNADVYVEDILIPYVVPYAPFIGENFLFMQD
FT                 NARPHTARRVLDFFDEVGINRLDWPANSPDLNPIEHLWDNLGRKVRNHVPA
FT                 PQSLRELRIILENEWNTITQDEIKRLIRSMPDRMNEVIRARGSHTHY"
XX
SQ   Sequence 3813 BP; 1114 A; 806 C; 784 G; 1109 T; 0 other;
     cactcaaacg caaaaaaccc ggtacactaa aaatttggga aaaaattaca aaatttcaaa        60
     tgatcataac ttggtaaata atgaagatac aaatatgcgc agaaatgcaa aatgaagctt       120
     gaaacgtcct ctttaagaat atctgaatgg caattatgct cggccatttt tttcaaaatg       180
     gcggatgata aagtgagagg atgcaaaatt gataatcaaa ggtccgtgtt tgcgatggtg       240
     catggtgtgc atcaggtatc gcagcgtaat gggaccaaat gcacatgaaa gtatagagtg       300
     ttatctttaa aatgctactt taccgagctc gatgtgatca tttttcactg agttgttcca       360
     aattttgcta aaaatgcggt tttcttgtta aatttgcata attcagtgaa taagtatcgc       420
     atcaagctct ataacgaagt attttaaaga aaacattcta tacttttagg tacttttcgt       480
     cccattgagc tgcgacactt actttgctcc atgcgccgtc gcacgctcga accttttttt       540
     agcaactttt catgttctcc tttttatcac ccgccatttt gaaaaaatat cgttgcgcac       600
     aatttcgata gatctttcga aaagtacggt ttcaaagctt tcaaaccgtt tttgaaattt       660
     gctgctagga tatttaggtg tcgagatatt caatttcgaa tttgcaacaa atgtcgattc       720
     agcgaggctt aaggggctaa gaggctctgc ggttcgtttg gctctttcat aatttcaata       780
     gccgcgttca ttattctcta tacaataatt tacacaattt tgcgaattgg aaatttaatt       840
     tttatcaaaa gttatcattc tttacccttc agttacgcat gatcactgtg gtatacactt       900
     tagttcgcga agctgtccct agctctctac cttctccgta cgattggcca ttatggtaca       960
     cagcttgaat atgctgttca ggatcgcgcc tgagttcgcg gtgacccggc gcgcgggatg      1020
     ccgagtcgct ggacgccacc tgaacgtcga aattccctgg cgctcctagt ccacggagcc      1080
     gccgcgacgc ggcgatctgg gttgtcgcgc gcgcgagccc ctcggctcgc ccgcgagttc      1140
     gagctgccca gggcatataa gagtgcccgc ggagacgatc agagattgcc ttcgtacagc      1200
     ttttggcctt cgtacggtcc accgccgata gtggcactat ctcttgtacg ctggacttcg      1260
     cgagtttgtc agtacgccgg gcttacgttc tggcttgact gagattctgt cggtgcgccg      1320
     ggctttaacg cctggcttga ctggattttt cttaaatgta tgtgccaaga caataaacaa      1380
     agacaaacaa ttttcctttt ccgaacgtgt tcactccgat aagcgctgcc tcgtgcgact      1440
     tttctttttc cgtgatcttt tcctttcgag gcgcgttgct tcgtgcaact tcatcaattt      1500
     aaaccataat tgattgtttc gcatcgaaat tattgcgtcg attatggcga cgataaatcc      1560
     tgaaaaggct gctcaagtta ttgctttaat tgaagatggc agaagtcgaa ggtacgttgc      1620
     tcaggcactt gatttgtcag tgtcaactgt gcaacgtgct tatgccaggt acttacaaac      1680
     caattctttc catagaaggc ctggttcggg acgtcctcga tgtaccaatc acaatgatga      1740
     ccgatttatt gtttcaaatt cgttaagaga cagacatcga acatctgttc aaattagaaa      1800
     caatttaagg gatgtccgca acattaatgt atccgttaac accgttcgga gaagattaaa      1860
     ggaacaaaat ctgctttcgc gcaggccagc agctgtacct ttgcttaaat gtcaccatcg      1920
     cgtagctcga ctcaattttg cagttgagca tagagactgg acttacgcag actggagcaa      1980
     agtactcttt agcgatgaat ctcgtttttg tgtctattct ccagatggac gagaacgagt      2040
     ttatcgtcgc ggtggagaac gatttgcaga ctgtacggta agtgagaggc atagctacaa      2100
     tggaggctct gtaatgattt gggcaggaat ttcagctaat gctcatacag atctgcactt      2160
     ttttgacaag aatatgaacg cagatgtata cgtggaagac atactcattc cgtatgttgt      2220
     tccgtacgca cccttcatcg gagagaactt cttgtttatg caagacaatg ctcgaccaca      2280
     cactgcgaga agagtgcttg atttcttcga tgaagttggc ataaatcgac tcgattggcc      2340
     agcaaatagt ccagatttaa atccaatcga acacttatgg gacaacctcg gcaggaaagt      2400
     acgaaatcac gtacctgctc ctcagtcact gcgagaactg cgaataattc tcgaaaacga      2460
     atggaataca attacgcagg atgaaattaa aagactaata aggagtatgc ctgatcgtat      2520
     gaatgaggta atacgcgcac gaggcagtca tacccactat tagtacacac acaccacaca      2580
     cacagcagag agggtttgga gtcattaatt actgcaggag tgacgaactg cggggtcctt      2640
     atctctgctg taacaccaca catacacaca caccacaagg agggtgtgaa atcttgaaat      2700
     actgtggagc tgacgaacca cggggtcctt atccttgtgg tatacaaaca cacacacaca      2760
     cacacacaca cacacactac atacaatggg acttttccta ccagtaaaac tccatgcggt      2820
     ttatattggg aagacttaca accataattt gagctaatga cagcggtatc ttaaaacgca      2880
     attcatcttt attacgtaat atcgattacg caaaatgaag aacctaaatt gaattttact      2940
     ttcatttccc tggctttcaa aataataaat gcaaatcatt gaatatattg tgcaggttat      3000
     gtaaattatt atatagagaa acatgaacac agctattgaa attatgaaag agccaaacga      3060
     accgcagagc ctcttagccc cttaagcctc gctgaatcga catttgttgc aaattcgaaa      3120
     ttgaatatct cgacacctaa atatcctagc agcaaatttc aaaaacggtt tgaaagcttt      3180
     gaaaccgtac ttttcgaaag atctatcgaa attgtgcgca acgatatttt ttcaaaatgg      3240
     cgggtgataa aaaggagaac atgaaaagtt gctaaaaaaa ggttcgagcg tgcgacggcg      3300
     catggagcag agtaagtgtc gcagctcagt gggacgaaaa gtacctaaga gtatagaatg      3360
     ttttctttaa aatacttcgt tatagagctt gatgcgatac ttattcactg aattatgcaa      3420
     atttaacaag aaaaccgcat ttttagcaaa atttggaaca actcagtgaa aaatgatcac      3480
     atcgagctcg gtaaagtagc attttaaaga taacactcta tactttcatg tgcatttggt      3540
     cccattacgc tgcgatacct gatgcacacc atgcaccatc gcaaacacgg acctttgatt      3600
     atcaattttg catcctctca ctttatcatc cgccattttg aaaaaaatgg ccgagcataa      3660
     ttgccattca gatattctta aagaggacgt ttcaagcttc attttgcatt tctgcgcata      3720
     tttgtatctt cattatttac caagttatga tcatttgaaa ttttgtaatt ttttcccaaa      3780
     tttttagtgt accgggtttt ttgcgtttga gtg                                   3813
//
ID   Mariner-79_LMi repbase;    DNA;    INV; 1583 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 20.01, Created)
DT   16-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-79_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1583
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 75-75 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           273..1352
FT                 /product="Mariner-79_LMi_1p"
FT                 /translation="MYSIEQRVFLVLEYHRLEESPTATRRSFQARFNVPKG
FT                 PDAKTIRTLFAKFQRTGSVTDDLVGHVGRKQTAVTPENIATVSGIIQRNPM
FT                 SSVRRIASETGLKRSSTQKILRKSLHMFPFKIQTHQAIPVRAVQQRVAFAN
FT                 QMLTMIDSEGFDVGCIWFTDEAHFHLNGYVNKQNWRFWGSEKPYWCEAKPL
FT                 YSPKVTVWAAVCSRGIIGPFFIRETVTGARYVAILEQFVATQQALEDRPGT
FT                 EWFMQDGARPHRTEQVFRFLEEYFGNRVIALEYPKFTGAGMDWPPYSPDLT
FT                 PCDFFLWGTVKDMVYPKHPATLDELESAISVACESISVETLRNVMANFILR
FT                 LRHLCSANGEHFENIVM"
XX
SQ   Sequence 1583 BP; 451 A; 331 C; 362 G; 439 T; 0 other;
     cagggtgtcc agaaaaggac tccctgattt caaaattaaa tatctcgaaa acaaagatcg        60
     atagaggaat gcagtaaacg gtatgtttat tgtgaaagct gtaagaagtt tatacagcag       120
     tttgaaataa tagttacaaa agctgctaac agatggcgct gtaatcgcca tacgtaatgc       180
     ctagtataaa tagtgatccg aagcccagag cgatcagttc cactattgaa acgtgaaagg       240
     aggttagcgt accgaaggaa gagattaaaa ccatgtactc cattgaacaa cgcgtttttc       300
     tggtgctaga gtaccacagg ttagaagaga gtcctacggc aacaaggcga agttttcaag       360
     cacgatttaa tgttccaaaa ggacccgatg cgaaaaccat tcgtacgctc ttcgcaaaat       420
     ttcaacgaac aggcagcgta actgatgatc tagtggggca tgttggccgc aagcaaaccg       480
     cagttacgcc tgaaaatatc gccacagttt ctggaattat tcagcgaaat ccaatgtcat       540
     ccgtccgtag aattgcatct gagactggtt tgaagcgttc cagcacgcag aaaatactga       600
     gaaagagcct acacatgttt ccattcaaaa ttcaaacgca ccaggccata cccgtacgag       660
     ctgtgcaaca aagggttgcc tttgctaatc agatgctcac aatgattgat agtgaaggat       720
     ttgatgttgg ctgcatctgg tttacagatg aagcacactt ccacctgaat ggatacgtga       780
     ataagcagaa ctggcgattt tggggttccg aaaagccata ttggtgtgaa gcgaaacccc       840
     tgtattctcc taaagttact gtgtgggctg cagtatgcag cagaggcatt attggccctt       900
     ttttcattcg agaaacggtc actggtgcac gttacgttgc aattttggaa caatttgtcg       960
     ccacacagca agcgttagag gatcgaccag gtactgaatg gtttatgcaa gatggagccc      1020
     gaccacatcg gaccgaacaa gtgtttcgct ttcttgagga atacttcggg aatcgagtca      1080
     ttgctttgga atatcccaaa tttactggtg caggcatgga ttggcctcca tattcgccgg      1140
     atttgactcc ctgtgacttt tttttgtggg gcacagtgaa agacatggtc tacccgaagc      1200
     atcccgccac gctggacgag cttgaatcgg cgatctctgt ggcatgtgaa tccatttcgg      1260
     ttgagacact acgaaatgtg atggcgaatt tcattcttcg tttgcgccac ctctgtagtg      1320
     ccaatggtga acattttgaa aacattgtga tgtgattgtt tgcaaagagt gttttcatac      1380
     gattatttca cttatgtatg ctgatatgag ctgtacagcg tacagcgcca tctgttagca      1440
     gcttttgtaa ctattatttc aaactgctgt ataaacttct tacagctttc acaataaaca      1500
     taccgtttac tgcattcctc tatcgatctt tgttttcgag atatttaatt ttgaaatcag      1560
     ggagcccttt tctggacacc ctg                                              1583
//
ID   Mariner-7N1_DEl repbase;    DNA;    INV; 554 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-7N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-554
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 419-419 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 32-bp TIRs. Internally deleted
CC   derivative of Mariner-7_DEl.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 554 BP; 160 A; 106 C; 131 G; 157 T; 0 other;
     tattgggtgt acaagtagaa aaccgccgtt ttccactggg tggcgccacc tttggaaatc        60
     ggtgagggaa ttccgatcag aagcatcaca tggcaagctt aggtatcggt caacaactcc       120
     acatcatctc gctcgtctat tctcattgtc catttttttg ttggtgcgcg aagatgtcga       180
     aatttgaacc gaataagcgt catttgcggg agattttgct tttcgcgttt cattcgaaaa       240
     aatctgctgc tgaagcgcgt cgaatgattg tagcaacata tagtgagtcg tgtatcagtg       300
     aaagaacgtg ccgagaatgg ttcgtgaaat tcaaaaatgg tgattatgac gtggaagaca       360
     aggatcggcc gggtcccgtg aaaaagtttg aagatgcagc tttggagact ctgttggatg       420
     aagattcttg tcagacacaa caagaatcca tcacaggagc tctctatttt gaataatcag       480
     tatgtagcta tttttacgca ataaagcctc aaactatgaa aaaaaacggc ggttttctac       540
     ttgtacacct aata                                                         554
//
ID   Mariner-7N1_PBa repbase;    DNA;    INV; 1225 BP.
XX
AC   .
XX
DT   26-SEP-2013 (Rel. 19.03, Created)
DT   10-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-7N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1225
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 619-619 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 3-bp (TNA) TSD.  ~550bp TIR. It
CC   includes two tRNA-like seuqneces.
XX
SQ   Sequence 1225 BP; 406 A; 195 C; 186 G; 436 T; 2 other;
     caaggggagc accagacatt gtcccctccg atttcgttga actttatata tgttataaac        60
     ctatcctccc actaattcat cttaaagtaa taggacccgc ctctcaagca ttcgcgagaa       120
     aaacgcgttt aaagatttac gtgtgcgtaa tgtaccgtgt agtaagaaca gattgacacc       180
     taagcagcgt agcctagtcg gtaaggcgcc tgactacaat gctgcatatt actggttcga       240
     atcttacttt ttccattttt tttttttaat ttcctcgcaa cgtactattg tgtgtggtgt       300
     atgtttttaa atatttagcc tataaaataa ctgttttaat tatacaatta attatatttc       360
     agaaattata aaattcatct atttattaat gtttttaagg ttttgtgaat aaaaaataat       420
     ataattttat tatataattt tagaatgtgt taataaaata ttattaatta tatgttgaaa       480
     tttattttct attcaattaa acaaatttca aattattttt gccacgattt ttcttcttgt       540
     cgcaacgaat ttcggctaca cagacagtcc cttttggcaa ggatatctgt gtagttatac       600
     gcgcgctacc tgagaacttg ttttctttgt aacactataa ggttgtttaa acggttttga       660
     ctttcttctc ttagcctmct ttckttgcaa cacgaagaaa tatcgtggca aaataatttg       720
     aaattttctt cattgaatag aaaattcatt tcatcatgta atataaaata ttttattaac       780
     acattctgaa attacataat aaaatttatt attttattca caaaacctta aaaacattaa       840
     taaatagatg aattttataa tttctgaaat ataattaatt gtataattaa aacagttatt       900
     ttataggcta aatatttaaa aacatacacc acacacaata gtacgttgcg aggaaattaa       960
     aaaaaaaaaa tggaaaaagt aagattcgaa ccagtaatat gcagcattgt agtcaggcgc      1020
     cttaccgact aggctacgct gcttaggtgt caatctgttc ttactacacg gtacattacg      1080
     cacacgtaaa tctttaaacg cgtttttctc gcgaatgctt gagaggcggg tcctattact      1140
     ttaagatgaa ttagtgggag gataggttta taacatatat aaagttcaac gaaatcggag      1200
     gggacaatgt ctggtgctcc ccttg                                            1225
//
ID   Mariner-7_ACe repbase;    DNA;    INV; 1272 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1272
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 516-516 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 87% identical to the consensus.
XX
SQ   Sequence 1272 BP; 379 A; 245 C; 284 G; 363 T; 1 other;
     ttaaatcagt gcaaaagttc gtgtccgatt cgtatagatg gaactggtga agtagcatgg        60
     cgactctgtt gttgtttatg tatgcatatt atatatcgtg gaaagataac agtcataagt       120
     gtcatttgag catcagaagt gtttggtttg gttgaattta agtcgtgaaa aaaatcattg       180
     aagatggaca aggagaagtt gcattttcga catgtgatgc tttacgagtt tcggaaagga       240
     ataaccattg gcgctgcgac aaaaaacatt caggaggttt atttggacta tgcaccagcc       300
     cttcgaacgg tgaagaagtg gtttgctaaa tttcgtcgtg gtgattttaa cctcgaagac       360
     gaacctcgtc ctgcgtcmtt tcgtcgacga cgttctgcgc gcattaatag caaacaatgc       420
     acgtatttcg acggaagagg ttgctgaggc cctgaacatt gatcgatcaa ccgcgtttcg       480
     gcgtttaaag aagatgggac tcactctgaa gctcgatacc gcattcgttg tccgaaaaaa       540
     aacaaattgg atcgcatctc cgcagccgtt tctttgctca gacgcctgga aaaagatttt       600
     ttttggaccg tttggtgact ggtcaatgaa aaatgggtcc tgtataccaa cgtcaaacac       660
     aggcgtactt ggaaggaagc aaaccggcag attcaattgc caaagccgag ttgcatccgg       720
     agaagatctt actgtccgtt tggtgagatt gccaaggtgt tatatatttt gagctgcttc       780
     ctgttggcca aacgattgat tcaaagaagt actgccaata actaatcaaa ttggatgcag       840
     caatcaaaaa aaaacgcccg agcttggtta attgtagagg cgtcatcttc caccatgaca       900
     acgccagacc acacacttcg aaaatgactc tggacaaatt gaaacagttg aaatgggaaa       960
     tcttattgca tccactatat tctccggaca tcgcaccctc cgattattat ttgttttggt      1020
     cattacaaaa cgatttaaat ggcaagaatt tcgattctgt ggaggctgtc aaaaatcaca      1080
     tcaccgcata atctttgacg caaaaccacg cgattttttt caaacgtggt atctataaat      1140
     tggttgaacg ttggaaaatg attgttgaga atggtggcga atacattgat taataaaggc      1200
     ggttttttca caataacaac tgcttgtcaa cttttattta caaatcgggc acgaactttt      1260
     gcactgatcc aa                                                          1272
//
ID   Mariner-7_AEc repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1296
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 550-550 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1227
FT                 /product="Mariner-7_AEc_1p"
FT                 /translation="MEKQEYRILIKHCFLMGKTSEQSLKWLQKCYPTSAPS
FT                 RTTVYRWFSEFKMGRTSTEDAPRSGRPKEATNAEIAKQVHRIVLSDRKVKL
FT                 RELTEAVGISKERAGYILHDVLEMKKLSARWVPRLLTIDQKQQRVDDSTAG
FT                 LALLQRNRADFFRRFVTMDETWVHYHTPESNRQSAEWLKSHESRPKRPKDQ
FT                 RSAGKVMASVFWDAHGIIFIDYLQKGRTITGEYYAALLDKLNDEIKKKRPH
FT                 MAKKKVLYHHDNAPSHTSLKAMVKLDQLRFELVAHPPYSPDLAPSDYYLFP
FT                 NLKRWLQGKRFTSNEEVIAETEAYFEGLDVSYYRKGIEMLENRYTKCIALE
FT                 GNYVEE"
XX
SQ   Sequence 1296 BP; 386 A; 272 C; 315 G; 322 T; 1 other;
     tactacatgg gctgaaaagt cccgggattt ttcaataggt ggtgccacta gaaaatgaac        60
     atgattcatt tcgagagatt catctgtcac tagtttatgt atgaagtttc atgacatttc       120
     gttcattcgt ttacaagcta cagtcgttta agtggcgtta ctttcgcctt cgtaaaaaaa       180
     atggaaaaac aggaatatcg catcttgatc aaacattgtt ttttgatggg aaaaacttct       240
     gaacaatcat tgaaatggtt gcagaaatgt tatcccacat ctgctccttc gagaacaaca       300
     gtttatcggt ggtttagtga atttaaaatg ggtcgtacaa gcaccgaaga cgcacctcgc       360
     tctggaaggc caaaagaggc tacgaatgcg gaaatcgcaa agcaagtgca tcgaatcgtt       420
     ttgagtgatc gtaaagtgaa gttgcgcgag ttaactgagg ccgtgggcat ctcaaaagaa       480
     cgggcgggat acattttgca cgatgttttg gagatgaaaa agctatcggc acgatgggtg       540
     ccgcgtttgc tgaccatcga ccaaaaacag cagcgcgttg atgattcaac ggccggtttg       600
     gcgttgttgc agcgtaatcg agcggacttt tttcgacgtt ttgtgacgat ggatgaaacg       660
     tgggtccatt accatacgcc tgagtccaat aggcagtctg cagagtggct gaaaagccac       720
     gaaagccgac caaagcggcc aaaagaccaa cgctcggccg ggaaggttat ggcctccgtt       780
     ttttgggatg cgcatggcat aatcttcatc gattacctgc agaagggaag aacaattacg       840
     ggagagtatt atgcagcgtt attggacaaa ctgaacgacg aaataaagaa aaaacggccc       900
     catatggcga agaaaaaagt tctgtaccat cacgataacg caccgtcaca cacgtccttg       960
     aaagcgatgg tcaaattgga ccaattacga ttcgaattgg ttgctcaccc accgtattct      1020
     ccagacttgg cccccagcga ctattatctg ttcccaaacc tcaagcggtg gctccaggga      1080
     aagagattca catcgaatga ggaagtcatc gcggaaaccg aggcgtattt cgaaggcttg      1140
     gacgtttcgt actacagaaa gggcatcgaa atgttggaaa atcgctatac caagtgtatc      1200
     gccctcgaag gcaactatgt tgaggaataa atataacttt gcmcaaaaaa cgcttgtttt      1260
     cattaaaaat cccgggactt ttcagcccat gtagta                                1296
//
ID   Mariner-7_BM repbase;    DNA;    INV; 1734 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   28-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1734
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 942-942 (2010).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           377..1399
FT                 /product="Mariner-7_BM_1p"
FT                 /translation="MGKNKSCDPTLRKIIMKFVERGWSYRRIAQHLNCSKT
FT                 MVCNAVQHFKRYNTALNVSRTKRSRKTTPQEDRMITRLAKKDPFLGSILIK
FT                 HEVFGANERAGVSARTVRRRLVEAGLFGRVARKVPLLKKEHRNARLAFARK
FT                 YGHWTYAQWQHVLFSDETKVNLISSDGRQYVRRPVKAEMNPRFTKKQVKHG
FT                 GGNIKIWGSFSGRGVGPVRKVQGNLDQHQYKAILEETMLPYAEEHLPIIWT
FT                 FQQDNDPKHTAHSVKSFLTSQFVSVLDWPANSPDLNPIEHLWHEIKKKVAT
FT                 YRNTNLDELHEAFCEAWANIPVETCQKLIMSMPHRCQAVITNKGFATGY"
XX
SQ   Sequence 1734 BP; 560 A; 297 C; 339 G; 538 T; 0 other;
     cagtcgtggt caactaatta gggacaatct ctagttaagc caaattgtga atatttttta        60
     ttattttcca acgagtctta gcaatattcc atatctttta catgtaagtg taattagtca       120
     tttatgtgcg cgattataca aacaataaca acttcttaaa cattaaacct ctttacagta       180
     tagctgatac aatatcatag tgctattggt tcaaagaatg ctggctggcc atttaattag       240
     ggacactgag gtattgcgtt ctaatttcaa aattggaatt ttaatacttt tttgtttctt       300
     ttcttattgt ttagtggtcg ttttggcggc aatccagatt ttttatttta agttttgaga       360
     attattttga agaaaaatgg gcaaaaataa aagttgcgat ccaacactac gaaaaattat       420
     catgaagttt gtcgagcgtg gttggtcata ccgaaggata gcacaacatt taaattgttc       480
     aaaaactatg gtatgcaatg cagtgcaaca tttcaagcgc tataacacag ctttaaatgt       540
     gtccagaaca aaaagatcga gaaaaacgac tccgcaagaa gatagaatga taaccaggtt       600
     agctaagaaa gatccgtttc taggctctat tttaattaaa cacgaagtgt ttggggcaaa       660
     cgaaagagcc ggtgtatctg cgaggaccgt tcgacgacgt ttggtagaag cagggttgtt       720
     cggaagagtg gctcgcaaag taccgttgtt gaagaaagaa catagaaatg ctcgtttggc       780
     atttgcacgt aaatatggac attggaccta cgcccaatgg caacatgtac ttttctctga       840
     cgagaccaag gttaatttga tttcttcaga tggaaggcaa tatgtacggc gtcctgtaaa       900
     agcggaaatg aatccaagat tcacaaaaaa acaggtgaaa catggcggtg gaaacattaa       960
     aatatggggt tcattttctg gacgtggagt gggacctgtg aggaaagttc agggtaactt      1020
     agaccaacat caatacaagg caatattgga agaaactatg cttccctatg ctgaggagca      1080
     tctccctatt atatggacgt ttcagcagga taacgacccg aaacataccg cccattcagt      1140
     caagtcgttt cttaccagtc agtttgtatc ggtgctagat tggccagcaa atagcccgga      1200
     cctcaaccca attgagcacc tttggcacga aatcaagaaa aaagttgcca cttatcgtaa      1260
     tacaaatttg gatgaacttc atgaagcttt ttgtgaggca tgggcaaaca ttcctgtcga      1320
     aacatgtcag aaactgataa tgtctatgcc acatcggtgt caagcggtaa ttactaacaa      1380
     aggttttgct actgggtact gattttacac gtaataaaat ggagctgtta aagatattat      1440
     aacactgaag attataagtt ttgtgtaact gtatttttca ttatacttta ctgtccttaa      1500
     ttaaatgtcc actacagaat tgtaccttaa tatttaatac atgtttaatc tttgatatta      1560
     aatacttttt ctatttatta aatcttttat ttacagccat ttatagcata ataatcggac      1620
     cacattatgc aaataatagg tgctgagaaa tcaatagggt tttatattta aatgtacata      1680
     accggttata gcccttcact atcttgaatg tccctaatta gttgaccacg actg            1734
//
ID   Mariner-7_CFl repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1298
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 807-807 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..1190
FT                 /product="Mariner-7_CFl_1p"
FT                 /translation="MDRLTTADRIKIVKTYYKNGDSPAATFRALRGDFGRF
FT                 NRPTQQTVGKIVKKFEKTGSVTDIVRPVHHRNARSAENIAAVSESVADDSN
FT                 LSIPRRAQHLGLSYGSLWRILHLDLHFHPYKVQLTQELKPVDHGMRRKYAD
FT                 WVLEQQAVDGDFSTKIFFSDEAHFSLGGYVNKQNCRIWGNENPQVSQERPM
FT                 HPGKVWCAFWSGGVIGPYFFENDEGITVTVNSQRYGRMITNFFWPEIEDMD
FT                 LENMWFQQDGATSHTTRPILALLQEKFPGRVISRFGNVNWPSRSCDLTPLD
FT                 FFLWGYAKDRVYADNPFTLEHLKNNIHEVMAEIPAEMCQKVIENYLKRIEF
FT                 CKRSRGGHFNDIVFHI"
XX
SQ   Sequence 1298 BP; 390 A; 254 C; 285 G; 369 T; 0 other;
     cagggttatc catttcgtag tttcaaaagt acaaccacgc catctgacaa ctgtgaaaca        60
     taaatgtaaa caaaagtgac atttgttcag ttaaagctct accattttac gatatggatc       120
     gtttaacaac tgcagatcgc attaaaattg taaaaactta ctacaaaaac ggtgattctc       180
     ccgcggccac gtttcgcgct ttaagaggag attttggtcg ctttaatcga ccaacccagc       240
     aaactgtggg caaaatagtg aagaaattcg aaaaaactgg atcggtcact gatattgtaa       300
     ggcccgtgca tcatcgcaac gcacgttctg ccgaaaacat tgctgcagtt agtgaaagtg       360
     tggcggacga ctcaaattta tcgattccac ggcgtgctca gcatttggga ttgtcgtacg       420
     gctcattatg gcgaattttg catttggact tacacttcca tccttataaa gttcaactga       480
     cgcaagaatt gaaacctgtt gaccatggaa tgcgtagaaa atacgccgat tgggtgctgg       540
     aacaacaggc cgtggacggt gatttttcga ccaaaatttt cttcagcgat gaggctcatt       600
     tctcgctcgg tggatacgta aataagcaga attgtcgtat ttggggaaat gaaaacccac       660
     aagtgtctca ggagaggcca atgcatcctg gaaaagtctg gtgtgcattt tggtctggtg       720
     gtgtcatagg cccgtatttt tttgagaatg acgaaggaat cacggttact gtcaattctc       780
     agcgctatgg ccgtatgata accaactttt tttggcctga aattgaagat atggatctgg       840
     agaatatgtg gtttcaacaa gacggcgcca caagccacac aacacgaccc attttagcgc       900
     tattgcaaga gaaattcccg ggacgtgtga tttcaagatt tggcaatgtc aactggcctt       960
     caagatcatg cgatttgaca ccgttggact tttttttgtg gggctacgcg aaagatcgtg      1020
     tttatgcgga caatcctttc actcttgaac atttaaagaa caacattcat gaagttatgg      1080
     ccgaaatacc agccgaaatg tgccaaaaag tcattgaaaa ttacctcaaa aggattgagt      1140
     tctgcaagcg atctcgtggc ggtcatttta atgatattgt attccatata taatggtaag      1200
     atccaagcaa catattgata ataaaatttg atcgaaattt gaattgcaag tgtgttttat      1260
     ttaactttac ttttgaaacg acaaaatgga taaccctg                              1298
//
ID   Mariner-7_DAn repbase;    DNA;    INV; 1596 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1596
RA   Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 263-263 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           355..1353
FT                 /product="Mariner-7_DAn_1p"
FT                 /translation="MKKTSSDQENSIVSLTNQGFSTRAIGKKLNISQSVVV
FT                 RVQKRKNVKSKNLSGRPRLLKDSDARLMMQRMRKNRNLTPKEASTEIQKNV
FT                 SRWTARRALKKIGYKAAVKKNKPSISKKNARARLKFARDHKNWTTEQWKRV
FT                 IWSDESKFNRMQSDGKQYCWRRPGEKLNRTHIRESVKHGGGNVMVWGCFTW
FT                 WNTGKLIKIDGIMHKEDYLEILKNNLPDFIEKCAYPEQELIFQHDNDPKHT
FT                 AKIVKGWLKNQVFTLMDWPAQSPDLNPIENLWAIVKRRLGRYEAAPSNLDE
FT                 LWRRIENEWKKIPKEIIQNLIESMPRRLNNVIKNQGLWTKY"
XX
SQ   Sequence 1596 BP; 580 A; 269 C; 308 G; 439 T; 0 other;
     cagtagggag caaaattgag tacatgttga aaatttgatg tttaggtgct cataacacat        60
     aaacgcgaaa gtaaatggta acaccttttt tttctaagat tatatatctt attcataaca       120
     aaatggcata tttattttaa ccattaaaga agccgtttac tagatataaa ttaaaatcag       180
     tagcaacatg catatactca gtttagaacc tgacgtgatt cgaactgtat tgttgctttt       240
     attaaagaaa cccctgtaat aataagtcac ctttcaccat cataactcag agagcgacac       300
     gtcaaagaaa gtttcttcat tgatctaaaa ttttcttttt gttttggtga taaaatgaaa       360
     aaaacatcgt cagatcaaga gaacagcatt gtttctttaa caaatcaagg tttctcaacg       420
     cgtgccattg gaaaaaaact taacataagc caatcagtgg tggttagagt ccaaaaaagg       480
     aaaaatgtga agtcaaaaaa tttaagtggt cgccctcgcc ttttaaagga ctctgatgct       540
     aggctcatga tgcaaagaat gaggaaaaat agaaatttaa ccccgaaaga ggcttcgacg       600
     gaaatccaaa aaaatgtcag tcgatggaca gccagaaggg ctttaaaaaa aatagggtat       660
     aaggcagccg tgaaaaaaaa taaaccatct atttccaaaa agaatgctag ggctcgcctc       720
     aaatttgcac gagatcataa aaattggacc acagaacagt ggaaacgtgt gatatggtcc       780
     gacgaatcaa aatttaatcg aatgcaatcg gatggaaagc agtattgctg gcgcagacct       840
     ggggaaaagc taaatagaac ccatatcagg gaaagtgtga agcatggtgg gggaaatgtt       900
     atggtttggg ggtgttttac atggtggaac acagggaaac ttatcaagat cgatggcata       960
     atgcataaag aagactacct agaaatcctg aaaaacaatc tacccgattt catagaaaaa      1020
     tgcgcctatc ccgaacagga attaattttt caacatgaca atgacccgaa acatactgcc      1080
     aaaatcgtta aaggttggct gaaaaatcaa gtttttacac ttatggattg gcctgctcaa      1140
     agtcccgacc tcaatccaat agaaaacttg tgggcaattg tgaagcgacg gctaggacga      1200
     tatgaggcag cccctagcaa tctggacgag ctttggaggc gtatagaaaa cgaatggaaa      1260
     aaaattccaa aagaaattat ccaaaatctg atagagagca tgccaaggag actaaacaat      1320
     gtcattaaaa accagggtct ttggaccaag tattaaaaat atcttgtttc ctttttgtgt      1380
     catatcatct tagtctgagt atattgcatg ttgctactga ttttaattta tatctagtaa      1440
     acggcttctt taatggttaa aataaatatg ccattttgtt atgaataaga tatataatct      1500
     tagaaaaaaa aggtgttacc atttactttc gcgtttatgt gttatgagca cctaaacatc      1560
     aaattttcaa catgtactca attttgctcc ctactg                                1596
//
ID   Mariner-7_DBi repbase;    DNA;    INV; 1727 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Drosophila biarmipes genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-7_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1727
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 742-742 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~250-bp TIRs. TA TSDs. ~95%
CC   identical to Mariner-6_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           378..1394
FT                 /product="Mariner-7_DBi_1p"
FT                 /translation="MPKTRELTLELRAEIVTKFKAGIQQLKSLNCIKFRAE
FT                 MLYYLVKKRDTTGTLKNKKRSGRKPVLDQRQCRHLLVVVASNPSASPLKIA
FT                 QESKNIIGKQISDSTIRRRLKEADFNTYVVRKVIDITPTNRTKRLQFALEY
FT                 IKKPLDFWXNVLWTDEAAFQFQGSYSHHFMHLKKNQKHLAAQPINRFGGGT
FT                 VMSWGCLCYYGFGDLVPIEGTLNQHGYVQILNDHAFVSGNRLFPTYEWILQ
FT                 QDNAPCHKGRIPTKFLSDLNQAVLPWPPQSPDLNIIENVWAFIKNQRTIDK
FT                 NRKRDGVIAEIDEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY"
XX
SQ   Sequence 1727 BP; 590 A; 307 C; 314 G; 515 T; 1 other;
     caaccctagt caaaattatt ttcacaacac acaattattt gcacatccca acttccttta        60
     gttgttattc ttgttgttgt tgaacaattt ccctgaaata aatgttatag cgtagcttga       120
     tctatgctta agcgacacaa aaagaaaggc gaaaaatagc ggttcatagg acaaagctaa       180
     aagaaaaaga aaaaagctta tcagttgtca gaagtatttg cacacgtttt cggtgcgtca       240
     aaattatttt cacaatgcaa tttcgtcatt agtatttggt ttgcagcgac aagtggcggt       300
     tcgttttctc taataaattc aattcagtga aaattcaatt aaaataatta tttatctttt       360
     agatttatct aaacaaaatg cctaaaacaa gggagttaac ccttgaactc cgggctgaaa       420
     ttgttactaa gtttaaagcc ggtattcagc agctgaaatc gctaaactgt ataaaatttc       480
     gcgcagaaat gttatactac ttagtaaaaa agcgagacac aactggcact ttaaaaaata       540
     agaaaagatc aggccgaaaa cctgtgttgg accaaagaca atgcaggcac ttactagtag       600
     ttgtagcgag caatccaagt gcaagtccat tgaaaattgc ccaagaatca aaaaatataa       660
     ttggtaaaca aataagtgat tctacaattc gtcgcaggtt aaaagaagct gattttaata       720
     catatgttgt ccgcaaagtg attgacatca caccaaccaa ccgaacaaaa cgcctccaat       780
     ttgcattgga atatattaag aagcctcttg acttttggtt kaatgtttta tggacggatg       840
     aggctgcatt tcagttccag gggtcctaca gccatcattt tatgcatttg aagaaaaacc       900
     aaaagcattt ggcagcccag ccaatcaata ggtttggtgg tggcacagtc atgtcttggg       960
     gatgcctttg ctattatgga ttcggagacc tcgtaccgat agaaggaact ttaaaccagc      1020
     acggatacgt tcaaatcctt aatgaccatg cttttgtgtc aggaaataga ctttttccta      1080
     cttatgaatg gattcttcag caggacaatg ctccatgcca caagggtagg ataccgacca      1140
     aatttttgag cgaccttaat caggcggttc ttccttggcc accacaaagc ccagacctaa      1200
     atattatcga aaacgtttgg gcttttataa aaaatcaaag aaccattgat aaaaatagaa      1260
     aacgcgacgg agtcatcgct gaaattgacg aaatttggtc caaattgacc cttgaatttg      1320
     cccaaacttt ggtaaggtca atacctaaaa gactacaagc tgtcattgat gccaaaggtg      1380
     gtgtaactaa atattaataa tgtattttca taaaattaag aaaatcgttt gttaaaatta      1440
     gatattaagc tgaaataaat taaactaagt tttgtgaaaa taattttgac gcaccgaaaa      1500
     cgtgtgcaaa tacttctgac aactgataag ctttttttct ttttctttta gctttgtcct      1560
     atgaaccgct atttttcgcc tttctttttg tgtcgcttaa gcatagatca agctacgcta      1620
     taacatttat ttcagggaaa ttgttcaaca acaacaagaa taacaactaa aggaagttgg      1680
     gatgtgcaaa taattgtgtg ttgtgaaaat aattttgact agggttg                    1727
//
ID   Mariner-7_DBp repbase;    DNA;    INV; 1567 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1567
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 590-590 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1567 BP; 540 A; 257 C; 295 G; 474 T; 1 other;
     aggtgccaaa atgaggcgca aaacaaagaa tctattttta gctatgtgca tgccaaattt        60
     tatgtcgttt accttttgca ttctcttttt gctgatagga atggatgcag acaacggatt       120
     tttgcttggc ataagtattt tgacgaaacc ttgtggtaat tatctcgcga gtttcaacaa       180
     ggactgatca aagttttttg ctggttaggc attattaaca aatttttaaa acataataat       240
     taaaccaaaa attaatgttt gaggattatg gtgaaaacgg ccgagttaag tcttgttgtt       300
     agggcttcaa tcgtagcgaa gtttgaagct ggagttgccg taaaagacat tgcaaatgaa       360
     tagctatagc tattttaaac tatagcgtca aacagttcat tatcaaataa acaaattaaa       420
     aaacataaaa ctattaacaa cttgccaaga ttgggtgcca aacgcgaaac aacgacaaat       480
     gacgataaaa tccttctgcg ggcattcaag aaaaatattt ttttaaagcc tcaacctgct       540
     gcaaatgaat ggaataagac agctaataaa ccaatcagtg aacgtactgt ttgaaagaag       600
     cagaaatcaa gacgtaccga tcaaaggaaa taccgtacat atccaaagta aacaaggcga       660
     aaagattggc gttcgcaaag gagcatcagc ataagcctaa agaattttgg aggagcgttc       720
     tttggacgga cgaaagttct tttcaattta attcatctaa aaaggttttt tgtaagactg       780
     ccacgggtac aacgacaaaa aataggcccg tttgcaaaac agtgagtcat ggcggtggct       840
     cggttatgtt ctgggggtgc atctcatata atgggttggg tgacttggtg cccgttgaag       900
     gctcgatgaa ccaggggcaa tatttgagag tggtaaatga taactgtttc ccttccggag       960
     acaagcttat cggtgaatca tttatcctgc aacaggataa tgcccsatgc cacaaaagca      1020
     gaatgatcac caaattttta caggatgttg gtgtcaatac tctcgactgg ccaccacaaa      1080
     gtccagactt gaatgttatt gaaaacgtgt ggtccctcat aaagcggaag cgaattgctt      1140
     ctttgcataa aagcaaagaa gaaacaattc gcgaggttac ttccctttgg aacgatgtgt      1200
     ccacggatac cctcaaagct ttagtggact cagttccaaa acgacttcaa aaagttattc      1260
     aaactaaagg ggattatata ttttattaat ccaaattata tttttaattt atataaggac      1320
     ttttcaaaat tttttttatg ttacattatt taaaaccatt cgtcaaaata cttatgccaa      1380
     aggctgaaaa tcaatttaat tcgtatattt ttatatttaa atgaattatt ttttgtttta      1440
     ttatttttaa gtttgtatta ccgagatatg aaatgaaaaa aaaatgttta agttctatca      1500
     aacctataaa aaattataaa caaaaatacc tcattttcat tcgtcaaaat atttatgccg      1560
     actggtg                                                                1567
//
ID   Mariner-7_DEl repbase;    DNA;    INV; 1255 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1255
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 420-420 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 32-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..1175
FT                 /product="Mariner-7_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MASLGIGQQLHIISLVYSHCPFFCWCAKMSKFEPNKR
FT                 HLREILLFAFHSKKSAAEARRMIVATYSESCISERTCREWFVKFKNGDYDV
FT                 EDKDRPGPAKKFEDAALETLLDEDSCQTQQELADSLGVTQQSISLRLKSLG
FT                 MIQKQGTWVPYELRPRDIERSLFTCEQLLQRQKRKGFLHRLVTNNKKWILY
FT                 DNPKRKKSRPCINSTAKPNIHGSKLLLCIWWDQLGVVYYELLKPGESITGA
FT                 LYRTQLMRMSRALKERHDKVIILHDNARPHVSKVVKTYLETQKWDILPHPP
FT                 YSPDIAPSDFHLFRSMTHGLAEQHFQSYEEVKNWLDTWIASKDEQFFRRGI
FT                 HMLPERWEKVVASDGKYFE"
XX
SQ   Sequence 1255 BP; 364 A; 282 C; 296 G; 313 T; 0 other;
     tatcgggtgt acaagtagaa aaccgccgtt ttccactggg tggcgccacc tttggaaatc        60
     ggtgagggaa ttccgatcag aagcatcaca tggcaagctt aggtatcggt caacaactcc       120
     acatcatctc gctcgtctat tctcattgtc catttttttg ttggtgcgcg aagatgtcga       180
     aatttgaacc gaataagcgt catttgcggg agattttgct tttcgcgttt cattcgaaaa       240
     aatctgctgc tgaagcgcgt cgaatgattg tagcaacata tagtgagtcg tgtatcagtg       300
     aaagaacgtg ccgagaatgg ttcgtgaaat tcaaaaatgg tgattatgac gtggaagaca       360
     aggatcggcc gggtcccgcg aaaaagtttg aagatgcagc tttggagact ctgttggatg       420
     aagattcttg tcagacacaa caagaactcg cggattcttt gggtgtgact caacaatcca       480
     tttcccttcg cctaaaaagc ttgggaatga ttcaaaagca gggaacttgg gtaccgtacg       540
     agttgcggcc gagggacatt gagaggagtc tcttcacgtg cgagcaacta ctgcaacgtc       600
     aaaaaagaaa aggtttcttg catcgtctcg ttaccaacaa taaaaagtgg attctttacg       660
     acaatcctaa gcggaaaaaa tcccggccat gcatcaattc gactgcaaag ccaaacattc       720
     atggctcgaa gctgctgctg tgtatttggt gggaccaact cggcgtagtg tattacgaac       780
     ttttgaaacc aggcgaatcc atcacaggag ctctctaccg gacccagctg atgcgcatga       840
     gccgagcgct gaaggaaagg cacgataaag tgataatcct acacgacaac gcccggcctc       900
     atgtttccaa ggtcgtaaaa acttacctgg aaacacagaa atgggacatc ctaccccacc       960
     cgccctactc tccagacatc gctccttccg attttcactt gtttcgatcg atgactcatg      1020
     gtctagctga acagcacttc cagtcttacg aggaggtcaa aaattggctg gatacatgga      1080
     tcgcgtccaa agacgaacaa ttttttcgac gcggaattca catgctgcca gaaagatggg      1140
     agaaagttgt agccagcgat ggaaaatatt ttgaataatc agtatgtagc tatttttacg      1200
     caataaagcc tcaaactatg aaaaaaacgg cggttttcta cttgtacacc caata           1255
//
ID   Mariner-7_DF repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1637
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 774-774 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. 26-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           332..1348
FT                 /product="Mariner-7_DF_1p"
FT                 /note="transposase."
FT                 /translation="MAKNKNTNPAERKLIWEYYEKNTSILQICKTLHFSRG
FT                 KVRNAIAFYKKHGTWENIPREKPRKTTLNDDRRIAKISKADPFLTSTQIRG
FT                 QMVADYGVNVSAQTIRRRLNEFGLYGRIAQKKPLLSKKNVKARLQFAREHF
FT                 QKGPNFWNMIVWSDESKFNVFGSDGKPYVRRPPNKQLDPKYTKKTVKHGGA
FT                 SIMVWGCFTASGVGPLVKIEGIMNGEMYRDILINNLSGEYADNLPLAWIFQ
FT                 QDNDPKHTSKIVKSWFSQVKIKVLQWPPQSPDLNPIENLWGILKQVVGQKK
FT                 PANKNDLWRVLQEEWKKITPQQCARLVGSMPKRCSAVLKQKGHPTQY"
XX
SQ   Sequence 1637 BP; 546 A; 301 C; 323 G; 466 T; 1 other;
     cagtggtgct catagactta agccactgca actaccatag actgttttct taataacttt        60
     tttgaagata tttattttgg cgtgaaattt tttacatttt gcaacattgt tatttaagca       120
     gctgatcaca gtaaaaaatg acaagtagga attcgggggt tcccaaaaaa ttgactaaat       180
     tkccaaaagg agcattccga tctgctcata tacttaagcc accttaaact ttaatcgtca       240
     aacttgtgat ttttccggga aagttgtgct atttattttc taaactgaaa tattgaatac       300
     taaatacgtt tcccaaaaca atttgatcgc tatggctaaa aataaaaata caaatccggc       360
     cgaaagaaag ctaatatggg aatattacga aaaaaacaca agtattctac aaatatgtaa       420
     gactttacat ttttcgcgtg gcaaagtcag aaatgccatt gcattttata agaaacatgg       480
     aacctgggaa aatattccac gtgaaaagcc cagaaaaacc actttaaacg acgatagacg       540
     gattgccaaa atcagtaaag ccgatccgtt cttgacatcg acgcaaatca gaggtcaaat       600
     ggtggcagat tatggcgtga atgtgtcagc tcagaccata agaagacggt taaatgaatt       660
     cgggttatat ggacgcattg cccaaaaaaa accattgctg tccaaaaaaa atgttaaagc       720
     gcgccttcaa ttcgccagag agcattttca aaaaggtccc aatttttgga acatgattgt       780
     ttggagcgac gaatccaagt ttaatgtctt tgggagtgat ggtaaaccat atgtacgacg       840
     tcctcccaac aaacaattgg accccaaata cacgaagaag accgttaaac acgggggcgc       900
     ttcgattatg gtctggggct gtttcaccgc atcgggcgta ggtcccctag tgaagataga       960
     aggcattatg aacggcgaaa tgtacaggga catccttatt aacaatttat ctggagaata      1020
     tgccgataat ttgccacttg cctggatatt tcaacaggac aacgacccga agcacaccag      1080
     caagatagtc aagtcgtggt ttagccaagt gaaaatcaaa gttttgcaat ggccaccgca      1140
     gagtcccgac ttgaatccta tagagaactt gtggggaatt cttaaacaag tcgttggcca      1200
     aaaaaaacca gcaaataaaa acgatttgtg gcgagttttg caggaagagt ggaagaaaat      1260
     cacccctcaa cagtgcgcac gtcttgtggg ttcaatgcca aagcgttgct ccgctgttct      1320
     taagcagaaa ggtcacccca ctcaatatta aagtaaattt attaaaatta taaggaatat      1380
     tgggcaaatt ttaacttttt caaccatttt cttccaggtg gcttaagtat gtgagcagga      1440
     cattttggag atggtctcat attttttaag tttttcgtta aatatatatt tttataactt      1500
     ggttattctt cgattagaac actgatatat agaactaatg tgacacaaat aattggagct      1560
     gtgaaataaa aacttttctt aattttcgtt taaattcttg gttgaagtct tgtggcttaa      1620
     gtctatgagc accactg                                                     1637
//
ID   Mariner-7_DK repbase;    DNA;    INV; 1624 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1624
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1200-1200 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ~550-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1624 BP; 545 A; 277 C; 293 G; 509 T; 0 other;
     cactactggc cgaaataata agtacatgcg tatgtggttt gtttcaagtc ctataaaatt        60
     tgtttgataa acttaaggaa aaaacccact ttatttttag tttccgtact tattccagat       120
     aataaaaata actgcctaaa ggattttaca tttcaaattt agagacaggg gtcaatttta       180
     tccaaaaagc atgaaaatgg gctggccgaa ataataagta cacccattct tctaagtcta       240
     gaactcggaa cgtattagat atttttcact tctttcttct tacaagtaaa cttagattag       300
     tatccaatag aaccacactc gttttaggta actttcgcta ttatttttgg cattctagca       360
     ggaagtctgt ggcaagtcag tactagaagc tgagaccagg tttcttcagc aaatcttcac       420
     aaatcttcaa cattttaaaa tgttttggtt acaattcgac gttttaagtt tccccacaat       480
     gtttagttta ggtttatgac aggagactga cttgaccatc tcataacagt tacctctctc       540
     ttgccaaaaa ggacctgttt ggtcatccaa ggccatttcc ggcgaaattg acatttaaat       600
     ttgagctcga acagtttgtc gtagactgca tgagacagga ttacaaggac gtatacccca       660
     aaaggttcta ttacttcaag gaaaattttt tcagatgaag caaaagcttt gcaacatttt       720
     tttggtatgg tctgaaccgg aggtggaaac aaaatacttt ggggcaatga aacaaaaata       780
     tttctttttg aaaacgattc tagacggttt gtacgtcaaa ccaaagtcaa aaaattgagc       840
     tttgaaacgc gaaaaaaaaa gttaagcccg gagacagatg cataaaggtc aggggctgtt       900
     tttcctggca tggcgttgtg caaatacatc tcataaatgg tattacgacc gaattcgaaa       960
     ataaaacttt tttaactggc atcttctaac catatgctta gggaaacatg cccttccgat      1020
     agatttttca acgagataac gatccaaagt aaaccttaaa agtcatcatg gcctggttta      1080
     gggacaaaaa agtaaccgtc atgggttgga aaagtcagtt tccgaactca tacctaatca      1140
     aaaatttatg gggaaactta aaacgtcgta ttgtaaccaa tacatttaaa aattttgaag      1200
     atttgtgaag atttgctgaa gaaacatggt ctgagtttct agtagtgact tgcaacagac      1260
     ttcttgctag aatgccaaaa ataatagcga aagttaccta aaacgagtgt ggttttattg      1320
     gatactaatc taagtttact aataagaaaa aagaagtgca aaatatctaa tacgttccga      1380
     gttctaggct tagaagaatg ggtgtactta ttatttcggc cagcccattt tcatgctttt      1440
     tggataaaat tgacccctgt ctctaaattt gaaatgtaaa atcctttagg cagttatttt      1500
     tattatctgg aataagtacg gaaactaaaa ataaagtggg ttttttcctt aagtttatca      1560
     aacaaatttt ataggacttg aaacaaacca catacgcatg tacttattat ttcggccagt      1620
     agtg                                                                   1624
//
ID   Mariner-7_DRh repbase;    DNA;    INV; 1659 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1659
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1401-1401 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. 45-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1659 BP; 555 A; 276 C; 316 G; 507 T; 5 other;
     cagttgcgaa aataataata gcaccactac atcgcgctgc tttcattgta aaaaaagtta        60
     gtttgctgtt gttgtttttt ttcaaaataa ttttttttta aggtttagta ttgctctagt       120
     ctaaaacaaa gtttccgttt ttattaatcc cgcctacata ttttattttt agttttttac       180
     taaaaaagtc agaaaaacag cgaaaaaaaa aatagcacca cttacaagtt acttagagaa       240
     tatcttatat ttcgcccaac agccttaata gaaagtacct gctgataaga ttggactatt       300
     ttttaactat tttgtttaaa aaaaaattaa aaacaacatt aaaatgggac gtggaaaaca       360
     ctgcactgcg gaaaagcgta aacttcttaa aaaattgatt ttggaaggaa attcttacat       420
     aaaagttggt cgattggtag gatgctccaa taaaatgatt aggaacgcca taaatcataa       480
     aaaaaaatcc aaaacacgtg gaagaaaacg atctgtaaca ctttgacatg ccaaaaggtt       540
     gattcatgag agtaagaagg atcctttcaa gtctgctact gagcttaaaa tggagcctaa       600
     aattaatgcg acagatgaaa cagttcgcaa gtgtctcaga caacataact taaaagcctg       660
     cagtcccaga aaggttacca cttttaaatg ccaggcatat tgctaagcgc atgaagtttg       720
     caaagaacat gttaattggc cacttcaaaa atggaggaat atcttatggt cagatgagag       780
     taaggtcgtt ctgatggtgg aaaaggatct cgatcgtacg tcaggcgtcc caaaaactct       840
     gattttatgc cgcagtacac cacaaagacc ataaaacatg gagggagtag tctgatggta       900
     tgggcctgtt tgtcctatta tggagtaggt ccaatacatt ggattaaaac catactggat       960
     caggacgtgt acgtaaatat tttggatacg attatgctac cctttgcaga gtacgaaatg      1020
     ccactcgtat gggtcttcca acaagataat gaccccaaac ataccagcag aaaggcaaag      1080
     gattggttcg gaagaaactc tgtcaatgtg ttggagtggc ctgcgcagtc gcctgacctt      1140
     aatccaatag agaatctgtg gtccgatgtc aagaaggcag ttgctgcatc caagccaacc      1200
     accgtaagat cactttggaa agkagtggag gwgtcttgga cccatattcc cactaaacgg      1260
     tgccaggact tggttgaatc catgccaaga cgttgtgagg ctgttattgc caataatgga      1320
     tgcacaacca aatattaaat gaagaatcta cactttattt ggatgtataa atatagaaaa      1380
     ctcawgaatt ttttactwac tagtcgttgt tatagtttta aatctatttt tgwaaagtgg      1440
     tgctattatt tttttcgtca aatttcttta gtttcaataa aatatctaac atatcttaag      1500
     aaattaaata aatttggtaa tttttttttc atttccagtt ggtttattgt ctttcgattt      1560
     caaaatggta ttcaacgttt tcatagtgta aaaagtatag gtacagtgac cgtttaaaca      1620
     tagcttgagt aggtggtgct attatttttt tcacagctg                             1659
//
ID   Mariner-7_DSuz repbase;    DNA;    INV; 1635 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-7_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1635
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 93-93 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
SQ   Sequence 1635 BP; 571 A; 255 C; 289 G; 520 T; 0 other;
     cagttgcggc aacaaaaata gcaccaaagt gtgggcaatt tttatttgtg tacaaaatgg        60
     tcattttttg caatattttt cttctgtgtg taagggtaag taggtttaca tatcgtttaa       120
     ctaaagtaaa aatggttgtg ggcgtaatgc gaatggtttt taaaacttcg atagatttat       180
     gaaaaaagta gcataattat gcggcaacaa aaatagcact attaacggtt tttgggtata       240
     aaacttcatt tgctcagatt tgttggctgt ttttcgtttt gttgtattaa gaataagtac       300
     tactaagtga attggtaaaa taatgcataa aatagtgttc ccaatgggtc atttagcgcg       360
     ctgtaatgat acagatagaa ggacatttaa aaagctaatt tataaaggca atgcaaaaga       420
     taagttaagt tgaatcgttg aattctttaa aataatgatt agtagttacc taaaacaaga       480
     acacaaaaga atagcacgca gtacgaaagc cgcaatgacc ccataactgt taaaaagtca       540
     tttgcatgaa tgcaagtagg tcccgtttta ggcgcctatc aagtcgcttt ttttttttta       600
     atatttgtaa gtacataaaa agttggatat aatgtacata aaaatcaatt atgcgcttga       660
     cgtccaaaaa aaaaatctcc ctagactgca gagcatgggt gaatttgaag ggcgagtttt       720
     aaataaggcc cacaataaaa ggaacactct tatatggtct ggcggctgaa aattgctcat       780
     gtttagatga aaaagacttt aaattcacat caggtaacct acatatccaa aattgagtcc       840
     ccatttcaca tttgcaaaga ataataatgg tgaagcaagt ataatggtat gggcatattc       900
     tcgtactata atgttggtac catatcataa tgtaaaccca tacaggatca acatgttcac       960
     cttgatagct cagaaattgt gatgcaattt tattcgtaat acaaaactaa tttatttccg      1020
     aagctttacc acggttataa cccaaaaaaa atcagtcaga aagtcgtaca aagttttaaa      1080
     acccttaagc taaatggtat aatggggacc ttacaagccc cagaactaaa acacatcgaa      1140
     aatctttgca gaaatgttaa aaactatgtt tttaatgcaa aaccgaagaa aaaaaactgc      1200
     cctcgagcta ttttgaaaga gccagacaac aattttgcca agggaagatt ctggtgtcta      1260
     gtgacgtcaa ggtcggtcgt tgttgttgtt gttgttgcag cccaagcttt agaacaatat      1320
     ttttttacct taaggtgtat gaaatcatac atttcaatca aaaaaaattt tcaaatcgcg      1380
     ttatttttaa gttttttaag ttttttattt aagtggtgct atttttgttg ccgcataact      1440
     ttgctacttt tttgataaat gtatcgaaat tttaaaaacc atccgcattg tgggcgtaac      1500
     cacttttatt ttagttaata gatatgtaac cctacttacc cttacaaaca gaataaaaat      1560
     attgcaaaaa attaccattc tgtagcacaa agaagaattg cctacacact ggtgctattt      1620
     ttgttgccgc agctg                                                       1635
//
ID   Mariner-7_DTa repbase;    DNA;    INV; 1664 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   18-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1664
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(254..643,647..1399)
FT                 /product="Mariner-7_DTa_1p"
FT                 /translation="MQECPITDRIFGADLLQIVYASWFCAVETNFVHRVQR
FT                 NFNMEQKGREISVEERKMIIKFFLDGKSYREIGALVGRAHSSIQRVINNYN
FT                 STGSIQSKPRSGRPPLLTIREQKTIVKSVQLNPRTTAHQAKLIEESFSKSV
FT                 SEETVRRVIKKADYHSRVARKKPMISEVNRQKRLTFANEYISKPQDFWNKV
FT                 IFSDESKFCIFGIKGKVLVWRKSGEAFKKENLVGTVKHGGSGIMVWGCMAA
FT                 SGVGKLVFIETIMDQGLYINILKENLQQSAEKLGVKSEYYFQQDNDPKHTA
FT                 QNTKLWLLYNVKNQLRTPPQSPDLNPIEHLWDLLERKIRKHTITSKKMLKE
FT                 VIMEEWGKITTEETKKLVDSMPKRLTEVLHRKGYPTSY"
XX
SQ   Sequence 1664 BP; 564 A; 309 C; 348 G; 443 T; 0 other;
     cactcactcg catatctctg cgtacacccc caaaaaatgt caaaatcaaa ctttgaacat        60
     taattgttcg gccatttatg catgtatttt attcattatt tttttaaaca aaaatatagt       120
     ttattgtctt cattgacgta ggaacattag aaattttcaa ccgggggtta tattttattt       180
     ttaattctaa acttaacact acgaaaaggt gtacgcgcaa aagtctgcgt acagctgttt       240
     aaagccaagt ggaatgcaag aatgtccgat taccgatagg atttttggcg ccgatcttct       300
     gcagattgtc tatgcaagtt ggttttgcgc agttgaaact aattttgtgc atcgagttca       360
     gaggaatttc aacatggaac aaaaaggcag agaaatctca gttgaggagc gaaaaatgat       420
     cataaaattc tttttggacg gaaaatccta tagagaaatt ggtgctcttg ttggtagagc       480
     ccattcctcc atccaaaggg ttataaacaa ttataactcg actgggagta tccaatcaaa       540
     acctcgttct ggccgcccgc ccctgctaac cattcgcgaa cagaagacta ttgttaagtc       600
     tgttcagctt aacccgagga ctacagctca tcaggccaag ctttaaatcg aggaaagctt       660
     ttccaaatct gtttccgagg aaactgtgcg ccgtgtgatt aaaaaggctg actaccatag       720
     cagagtcgca cgcaagaaac caatgatttc tgaggtcaac cgacaaaaac gtttaacgtt       780
     cgccaacgag tacatttcaa agcctcaaga cttctggaac aaagtaatat tttccgacga       840
     aagtaaattc tgcatattcg gaattaaggg aaaagtcttg gtgtggcgga aaagcggaga       900
     agccttcaag aaagaaaatt tagtaggcac cgtgaaacat ggaggaagcg gtattatggt       960
     gtgggggtgt atggcggcaa gcggcgtggg aaaattggtg ttcatcgaga caattatgga      1020
     tcaaggacta tatatcaaca ttttaaaaga aaatttgcag caaagtgctg agaaattggg      1080
     ggtgaaaagt gaatattact tccagcaaga taacgaccca aagcacactg cccaaaatac      1140
     aaagctttgg ctgctatata acgtcaaaaa tcagctgcga acgccacccc agagtccgga      1200
     tctaaaccca atcgaacatt tgtgggatct ccttgagaga aaaatccgaa agcacacaat      1260
     aacatcaaag aaaatgctca aggaagtaat tatggaggaa tggggcaaaa ttactacgga      1320
     ggagaccaaa aaactggtgg attccatgcc gaaacgtctt acggaggtac tccacagaaa      1380
     aggataccca acaagttact gaaaaggatc ttcttttacg ttatactaaa ctgtacgcag      1440
     acttttgcgc gtacaccttt tcgtagtgtt aagtttagaa ttaaaaataa aatataaccc      1500
     ccggttgaaa atttctaatg ttcctacgtc aatgaagaca ataaactata tttttgttta      1560
     aaaaaataat gaataaaata catgcataaa tggccgaaca attaatgttc aaagtttgat      1620
     tttgacattt tttgggggtg tacgcagaga tatgcgagtg agtg                       1664
//
ID   Mariner-7_DYa repbase;    DNA;    INV; 1673 BP.
XX
AC   .
XX
DT   02-NOV-2011 (Rel. 17.09, Created)
DT   02-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Tc1/Mariner DNA transposon from Drosophila yakuba.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1673
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1747-1747 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
CC   TA TSDs. ~30-bp TIRs.
XX
SQ   Sequence 1673 BP; 502 A; 310 C; 287 G; 574 T; 0 other;
     cagctgcgaa aaaaaaaata gcaccacttg cccagtaaaa ctttgaataa gtctcctacc        60
     tacaattttg ggtttaaaag gatctgaaat acctttttag aaaggttaaa caattcactt       120
     tttaggaaat aaaaaaaaat cacaattgtt ctatgaattc ttaacttatt taaggaactt       180
     tatgaaaaat gacaaaaaag ggcgaaaaaa ataatagcac cacttcataa aaaatgcttt       240
     aaacataaaa tataaactta acagtaacaa attcattaat aacaagtgat tgtatattaa       300
     aactacgccg atcccattaa tttagtgttt ggtagtgtat cctttattag caataacagc       360
     tgcgcaacgc tttggcatgg agtcaaccag gtcctggcac cgttttgggg ttatattgct       420
     ccaggactcc ttaatcacgg tccataggct ttcgttatta gttggcttaa aagctgcaac       480
     tgccttttta atattcgacc aaaggttttc gatgggattg aggtctggcg actgcgcagg       540
     ccactccaga acatgaactg atctattttg gaaccattcc ttggctttcc tgctggtatg       600
     cttggggtca ttgtcttgtt ggaagaccta ttttagcggc atatcatatt cagcaaaggg       660
     tagcataacc gtttccaaaa tatccacata cacatgctga tccattatgg ttttatccaa       720
     tgtattggtc caactccata gtaagaaaaa catgcccata ccattacact ggatccgccg       780
     tgtttaattg cttctactgt gtcgtttggc ttatattcgg tgttcctagg gcgccttaca       840
     ttcgatcaag atccattgcc accaaaaaaa accaccttgc tctcatctga caataaaaag       900
     ttcgtccatc tttcgcatgg ccaatttaaa tgttccttga cgaacttaat gcgcttgggt       960
     atgtgtctcc catttaaaaa aaggaccttt ccttggacta cagcctttta aactatgttc      1020
     ccttagacat gtgtgaactg tttgcactgt tgcggatatg ttgagatcct ttttcagttc      1080
     ggtaggagct ttaaatggat ccttcttgct ctcgggcact agccttttga agagatgggt      1140
     gcccaatgat tgttttttcc cacgtttttc gggattctcg ttgtaggtga ttacatttcc      1200
     tataattttg tttgagcatt gaaggatttg gccaatattt ctaaaagatt ttccttcaga      1260
     aatgagtttt ttgatcaagt cacgtttttc tttagtgcag tgctttccac gtcccatttt      1320
     aatgattttt taaaggaaat tttttaaaaa tcattttcga aataatagat taagtgtcaa      1380
     gtttaataac cacatgcttt ttaccaaagc aatccttcga taattattga ttatttgaaa      1440
     aaatcgatag tggtgctatt ttttttttcg cctcatttta gaccttgccg cccaaaaaaa      1500
     attataaaaa attaaggtat aaacaattca aatttttttt ttcatttttg gatgggaaaa      1560
     atatctagca ttatgcgaaa aatcagtatt tggttctatc ggtacctcaa ccttaattta      1620
     tttgatcaat aacaaaaaaa ggtatggtgg tgctattatt tttttcgcaa ctg             1673
//
ID   Mariner-7_FoCa repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-7_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1646
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2475-2475 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TA TSDs. 222/221-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..1374
FT                 /product="Mariner-7_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MGQPRKEIPIQLRDLIIQDWKGESSVKLSMGKISEKF
FT                 KIPKSTVQRTIQRYRETGGLQTKKRTGRKKILTPREEIKLVRKVQRNPFLS
FT                 APKLAAQIVQESGKTLHPSTVRKIINKNGLHGRIPRKKPYLSKVNRKKRLA
FT                 FARKYVLKPPSFWSSILWSDETKVNIFGSDGHQKVWRRPKEALKNSNLRPT
FT                 VKHGGGSVMVWGCFGAKGVGNLEFIEGNMTGVSYTGILNRNLFESGRKVGL
FT                 GRRFTFQQDNDPKHTSKVAKEFFKINKVKVLDWCPQSPDLNPIEHLWDVTK
FT                 REVGKTNVKNKSELKTRIREVWDNLDPEVIRNLVSSMPKRLEQVISANGGH
FT                 TKY"
XX
SQ   Sequence 1646 BP; 546 A; 302 C; 342 G; 456 T; 0 other;
     cagttagagg aaaaagtttg cgtacgagat gtttcaagaa tttcaatccg ttgtcattta        60
     ttcatttttt ggagtatgat gtccaatttt ttttcgtagc atgctaaatt tatctaagtt       120
     tctcactacg tacaaaattt ccccacaaag ttgccacttt tagcgccatt aatgtatttc       180
     cgcatgaagg ctgaaaaaca cgaggaaaaa gtttgcgtac gaattgggta atttttaata       240
     ttcgcgacga ccattttttt cggtaagcaa tttttttata aattgtagat tagattattg       300
     tctgtagttt acaacaaaaa ctttttgatt taagtcatgg gtcaaccccg gaaagaaatt       360
     cccatccaac tacgggattt aattattcag gactggaaag gggagagctc tgtgaagtta       420
     tcaatgggaa aaatctccga aaagttcaaa atcccaaaga gtacagttca gaggacaatt       480
     cagcgttatc gggagaccgg tggattgcaa accaagaaaa ggacagggag aaagaaaatc       540
     ttgacaccac gagaggagat caagctcgta agaaaagtgc agcggaatcc atttctgagt       600
     gctccaaagc tggctgcaca gattgtacaa gagtcaggga aaaccctcca tcccagcaca       660
     gtccgaaaaa ttataaacaa aaatggttta catggccgaa taccccggaa gaagccatac       720
     ctaagcaaag taaacaggaa gaaaagacta gcttttgccc ggaagtatgt attgaagcca       780
     ccttcttttt ggtcatcaat actttggtct gatgagacaa aggtgaacat ttttggctcc       840
     gatggacacc aaaaagtgtg gagaagacca aaggaagccc taaaaaacag caatctccgt       900
     ccgactgtta agcatggcgg cggatcagtc atggtgtggg gctgctttgg tgctaaaggc       960
     gtaggaaact tggaatttat tgagggaaat atgactgggg tatcctacac agggatattg      1020
     aacaggaatc tttttgaatc tggacgaaaa gttggacttg gtcgccgttt tacctttcaa      1080
     caggacaacg atcccaagca cacatccaag gttgcgaagg aattttttaa aattaacaag      1140
     gtaaaagtgt tagactggtg tccacaatca cctgatctta atcccattga acacctctgg      1200
     gacgtgacaa aaagagaagt cggcaaaacc aatgtaaaaa ataaatccga gctaaaaaca      1260
     cgaatccggg aggtatggga taatttagac ccggaagtca tccggaactt ggtttcttcg      1320
     atgcccaaac gtcttgaaca agttatcagt gctaatggag gacatacaaa atactaagtt      1380
     aatttttttg tggatcacat tttcgaagat aaaattaatt ttaaatcgta cgcaaacttt      1440
     ttccgcgtgc ttttatattt tgatggagaa attggttttt agccccacca ctgataattt      1500
     ctttgcaact ttttttacga tgttagtatt cgagataaat ttagcatgct accaaaaaat      1560
     ttggacatca tactccaaaa aatgaataaa tgacaacgga ttgaaattct tgaaacatct      1620
     cgtacgcaaa ctttttcctc taactg                                           1646
//
ID   Mariner-7_HMM repbase;    DNA;    INV; 841 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-841
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2645-2645 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TA TSD. ~30bp TIR.
XX
SQ   Sequence 841 BP; 234 A; 173 C; 191 G; 239 T; 4 other;
     caggtsggwc agaaaggcgt gcgaatttca waatcggatt gatcstgaga gggacgcggg        60
     agggcagttc tgttctgtgt gaagggttat tacaaaaagg cggttcgtgc actattgcgc       120
     ggcgtctatt tcgctctgag tttagtttac atgatttaaa tcaatgtcct agtgaaagtg       180
     ttatcagatc gtgggtcaaa aagtttgagt ctacgggttc gacactgaat caaaaacctg       240
     cggggcgtcc aaggtcaata agaacggaag aaactgtaag cgaagtcgcc gccaaaccgt       300
     aacagtaaat tctgatcgct atacagacat gttacgtaac tttttcttcc cacaactgca       360
     taattttgaa gcctacaaca gcaggacctg gtttcaacaa gacggcgcga catctcatac       420
     atccaatgag tctccttagc agttgtaaac gaaatgttta ctggaaaact gatatcgcgt       480
     cgaggggaca ttccgtggcc tcctcggagc ccagatctca cgccactgga tttttttctc       540
     tgggggtacc tcaagagccg cgtttatgcc aataaaccga cgacaattgc ccagctcaag       600
     aacaacattt gcgaggaaat gtccgctatc ccacgagcga tgtgccagcg agtttttacg       660
     aatttgaggt tcagattcga ggagtgtgta cgtttggatg gtacacatct cagtgatgtt       720
     attttaaaaa aataaaattc ccatgtgttt actttattat aaataaagat tatctttcct       780
     aagccttgta gttttttttc tatgattttt ttaaaattcg cataacttaa tggcccacct       840
     g                                                                       841
//
ID   Mariner-7_HSal repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-7_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1280
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 847-847 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1199
FT                 /product="Mariner-7_HSal_1p"
FT                 /translation="MACAFVNITTLFVRLKMERGKEHFRHLLLYCFDSKKT
FT                 AAEAHRFISETYSDFSPSVKTCEYWYRRFRRGDFDLKDKERSGQPKKFEDA
FT                 ELQALLDENSAQTLQELAEALNVGKSTVSDRLHAMGKIQKEGKWVPHALSE
FT                 LAIQNRLTICTSLLSRHKKKQFLYQIITGDEKWIYYDNPKRKKSWISPGQP
FT                 STSTPKRNIHGSKVLLCIWWDMKGVVFYELLQPNQTVTAVRYQQQLIDLNH
FT                 ALNQKRPVIARRKRKVILLHDNARPHVAKTVKDTLSALQWEVLPHAAYSPD
FT                 CAPSDYHLFRSMQHSLADQHFKSYEEIQKWLDEWIASKDEHFFYRGIHLLP
FT                 EKWEKVIASDGKYFE"
XX
SQ   Sequence 1280 BP; 415 A; 250 C; 254 G; 361 T; 0 other;
     tattaggtgt tccggttagt tttgagggct taatatagat ggctatagct acaaatctac        60
     tagagatatt ttgaaagttg gtacgccatt ttaaagcttg gacatttcta caaataattt       120
     gacacatggc atgtgcattc gtgaacataa ccacactttt tgtgcgattg aaaatggagc       180
     gtggtaaaga gcattttcga catttactgc tttattgttt cgattcgaag aaaacggctg       240
     ctgaagccca ccgattcatc tcagaaactt attctgactt ttctccatcg gttaaaacat       300
     gcgagtactg gtatcggcga tttcggcgtg gtgatttcga tttgaaagac aaagaacgtt       360
     caggtcaacc aaaaaagttt gaagatgccg aattgcaggc attattggat gaaaactcag       420
     ctcaaacgct tcaagaacta gctgaagcat taaatgttgg taaatcaacc gtttcagatc       480
     gtttacacgc aatggggaag attcaaaaag aaggcaaatg ggttccacat gcattgtctg       540
     aattggctat tcaaaatcgt ttaaccattt gcacttcatt gctttctcgt cacaaaaaga       600
     agcagttctt gtatcaaatt ataactggag atgaaaaatg gatctactat gataatccta       660
     agcgtaaaaa gtcgtggata agtccaggcc aaccatcgac atcgactcca aaacgcaaca       720
     tccacggaag taaggtttta ttgtgcattt ggtgggacat gaaaggcgtc gtgttttatg       780
     agttgctaca accgaatcaa acagtcactg ctgtgcgtta tcaacaacaa ttaatcgatt       840
     tgaatcatgc tttaaaccaa aaacgtccag taatagctcg aagaaaacgc aaagtgattt       900
     tgttgcacga caatgctcga ccgcacgttg caaaaacagt taaggataca ttatcggcac       960
     ttcaatggga ggtcctacca cacgccgcgt attcaccaga ctgtgctcct tccgattacc      1020
     acttatttcg atctatgcag cacagccttg ctgaccagca cttcaaatca tatgaagaaa      1080
     tacaaaaatg gctcgatgag tggattgctt cgaaggacga acatttcttt tatcgcggaa      1140
     ttcacttgtt gcccgaaaag tgggaaaaag ttatagctag cgatggaaaa tattttgaat      1200
     aaaatataat ttaacgtctc tcaaaaataa acgtgtttct tttgcaaaaa atccctcaaa      1260
     actaaccgga acacctaata                                                  1280
//
ID   Mariner-7_LHu repbase;    DNA;    INV; 3022 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   10-MAR-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; TSD 3-bp;
KW   Mariner-7_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3022
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 365-365 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~500bp TIR. TSDs are 3-bp long,
CC   mostly TNA.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(732..1601,1651..2526)
FT                 /product="Mariner-7_LHu_1p"
FT                 /translation="MEGVPGSSSEHECDSNSLHSEESKLRLKDAIKHLEQL
FT                 LLENDLVAPESSGTISHEAMQIGEDLYESTVEILGSKMFVETEELIMAESD
FT                 DEEGLFEEIQDDDDSEQYMLPEKDNKSMEYIPLDYKIKVVNMAKEHPKWTL
FT                 KTLHKKGCSRLKSMKHLYRWEEDIKRGGTIIDKYAIINSWTYDRFVEARVN
FT                 YQQVTTRNLQEWALSAASQFENFPFKASKPWVIKFKKQHRIKQRKITKYVT
FT                 EKETATLEEILAAADIFRKQTQVLIPNFHKDFIINTXQTGKYLFLYKMMIV
FT                 SNQFFVAGCQYQSTFNRTLSTQGAKAVFVQHKSSNKISHSYTAQYAMTMSG
FT                 KLLPLVFICLQEATGAFGPKVKKAVDEFVKIXQNVIVTSSKSGKLTTYLYT
FT                 QFLKEVLSPYVKHEKFLLLIDSWGGXTNPALYDDIFQDDNNVGTCTIKVIP
FT                 PKCTPLCQPCDVYFYRQVKNLIKRLQNCSFLIEQKREIASREDCIEIHAIV
FT                 HHQLSAPIFENMLRYAWFASKLTDEREVFMNVNEVCFPLDILKKSCDCKNV
FT                 AFIRCAHCRANYCFACFYDKYHPSTCTVPSTSTDE"
XX
SQ   Sequence 3022 BP; 1063 A; 500 C; 537 G; 919 T; 3 other;
     caaggggaga ctacgacgtg ataccaatcg attttgtcga aactccgtgt atcgatagag        60
     tatcatgtca agtgtttcag ggtaaacgga taagacgcac ttctcaagcg ttcgcgagaa       120
     aatcgagatt aaagaatccc aagcgctata ttaacacatg gcgtagagca taaaatcgaa       180
     gagcgcgtag ctcagcggtt aagtactaga ctcgtaacgg caacgttgct ggttcgagtc       240
     tcgataattt tttttttttt taattttttt ctacaaggaa atgtaattat taatatatta       300
     tgaatatatt attattaata catacacaga aaataaatgt aaatacattt tattcattca       360
     ttgcatatta aaaaagcaca tttttctaca tattacgaag gaaaaaatta aataaatgta       420
     attattgatc gtttttaaac aacggataaa tcagtgctat atacaagtaa atgtgaaacg       480
     tgttttgtga agcagttgaa agccgttaca cagaaagaag aagaagacgg aacgttacgt       540
     taccaagggc cctttgcaag ggccacgtag tctactccga ttggtccata ttcggcgaag       600
     gcccaatcag attgtcccat attgggcgct cggccgttac gtacggcatc ggagcgcatt       660
     ttgctcctag caacgatagt agacagtaga gaaaattttt gtgtgatatt tgtgtgaata       720
     ttaacaataa aatggaaggt gttcctggtt cttcgtcgga acatgaatgt gacagtaatt       780
     cacttcatag cgaggaatca aaattacggc taaaagatgc aattaaacat ctggagcaat       840
     tactcctaga aaatgacctc gtggccccag aatcttctgg aacaattagc catgaggcaa       900
     tgcaaattgg cgaagattta tatgaatcca ccgttgagat attgggcagt aaaatgtttg       960
     tggaaacaga agaattgata atggcagaat ctgatgacga ggaaggtcta tttgaagaaa      1020
     tacaagacga cgatgactcc gaacaatata tgttaccaga aaaagataac aaatcaatgg      1080
     aatatattcc tctggattat aaaattaaag tcgtcaacat ggctaaagag catccaaagt      1140
     ggactcttaa aactctacac aaaaaaggat gctctcgttt aaaaagcatg aaacatttat      1200
     atcgatggga ggaagatata aaacgtggag gaacaattat agacaagtat gctatcatta      1260
     actcatggac atatgatcgc ttcgtggaag ccagagttaa ttatcaacaa gtaacaacaa      1320
     gaaatttaca agaatgggcg ttaagtgctg caagtcagtt tgaaaacttt ccttttaagg      1380
     catcaaaacc gtgggttata aaatttaaaa agcagcacag aattaaacaa cgaaaaatca      1440
     caaaatatgt aacagaaaaa gaaactgcca cgctagaaga gatattggct gcagcagata      1500
     tattccggaa acagacacaa gtattaattc ctaattttca taaggatttc atcatcaaca      1560
     cagntcaaac aggtaaatac ttatttcttt ataaaatgat gtaaaatata ttgtaacttt      1620
     actttataat cggtaatata atacatttaa attgtatcta atcaattttt tgttgcagga      1680
     tgtcagtatc aatcgacatt taatagaact ctctcaacgc aaggggcgaa agcagttttt      1740
     gtacaacata aaagtagcaa taaaatcagc cactcgtaca cagcacaata tgcaatgact      1800
     atgtccggaa aattattacc acttgtattt atatgtttac aagaagcgac aggtgcattc      1860
     ggtccgaaag taaaaaaagc tgtcgatgag ttcgttaaaa tatntcaaaa tgttatagta      1920
     acatcctcga agtccggaaa actcacaaca tatctgtata cacagttttt aaaagaagtg      1980
     ttatcaccgt atgtgaaaca tgagaaattt cttttattaa tagattcgtg gggcggtcan      2040
     acaaatcctg cattatatga tgacattttt caagatgata acaatgtagg aacatgtaca      2100
     attaaagtta ttcctccaaa atgcacaccg ctatgtcaac cgtgtgatgt gtacttttat      2160
     agacaagtta aaaatcttat caagcgccta caaaattgtt catttttaat agaacaaaaa      2220
     cgtgaaatag cgtctcgtga agattgcatc gaaattcatg caattgtaca tcaccaactg      2280
     tctgctccca tttttgaaaa catgttacga tatgcatggt ttgcatcaaa attaacagat      2340
     gagagagaag ttttcatgaa tgtcaacgaa gtatgttttc cgttagatat tttaaagaag      2400
     tcatgcgatt gtaaaaatgt agctttcata cgatgcgcac attgtcgtgc gaattattgt      2460
     ttcgcttgtt tttatgataa atatcatcct tcaacatgta ctgttccatc tacttccacc      2520
     gatgaataaa atatgtttca cattaatttt ttatgtttat ttatttgtat agcactgacc      2580
     atttaccatt attttacatt tacatttatt taattttttc cttcgtaata tgtagaaaaa      2640
     tgtgcttttt taatatgcaa tgaatgaata aaatgtattt acatttattt tctgtgtatg      2700
     tattaataat aatatattaa taatatatta ataattacat ttccttgtag aaaaaattaa      2760
     aaaaaaaaaa aaaaattatc gagactcgaa ccagcaacgt tgccgttacg agtctagtac      2820
     ttaaccgctg agctacgcgc tcttcgattt tatgctctac gccatgtgtt aatatagcgc      2880
     ttgggattct ttaatctcga ttttctcgcg aacgcttgag aagtgcgtct tatccgttta      2940
     ccctgaaaca cttgacatga tactctatcg atacacggag tttcgacaaa atcgattggt      3000
     atcacgtcgt agtctcccct tg                                               3022
//
ID   Mariner-7_LMi repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1646
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3010-3010 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           357..1382
FT                 /product="Mariner-7_LMi_1p"
FT                 /translation="MGRRGKCSTFEQRQLVVYHHAKGKTCREIAAIVNMKK
FT                 STVHDIIKRFEKEDRLEFRCSTGRPRTFSQRDERVIVRKVQQNPKISATRI
FT                 ASEVEGDLGIKVHPETVRRVLRRSQYHGRVARRKPFINAVNQKKRMQFARE
FT                 YAEYDQAWWNRVIFCDECKFTLWQSDGKANVWRKTNEELNPRNLKPTVKFG
FT                 GGSIMVWGCMSGNGVGDLVFIDDTMNKEAYLNILRGHLKQSARHLGIANNF
FT                 HFYQDNDPKHTAHIVQMWLLFNCPKVLHPPPQSPDLNPIEHLWDKLKRTLR
FT                 ADNIYTKETLKEKLRQEWANIGPDFTKKLVESMPSRLEEVLKMKGGPTRY"
XX
SQ   Sequence 1646 BP; 508 A; 307 C; 419 G; 412 T; 0 other;
     cactcagtcg caaaagtatt cggacagcac gtaaatgcgc ataattttgc agtttgccgc        60
     atgaacaaat acagaaattg cactttgtaa tgtatttggg actccgggta cgatgtcgca       120
     acgtgaaaca cgcgtcaaat acgaagaatt gttgttggac atgtgtctgt tacgtaatat       180
     ttcctgaaaa cggcatggga aggtgcaaca aaagtattcg gacaaaggcg gacaacgtga       240
     gagaatagtt cattccgaga cgcacagagg gtgaagcgac tgcagtgtgt ccgacatttc       300
     cgcgagacga tagcgatgat tagtaaacac gtatcgcgag cctgtgcagg tcgacgatgg       360
     gacgcagagg gaagtgttct acgttcgagc aaaggcaact tgtcgtttat catcacgcga       420
     aggggaaaac ctgcagggaa attgccgcaa tagtgaacat gaagaaaagt acagttcacg       480
     acattattaa acggttcgag aaagaagacc gattggaatt ccgttgcagt acaggacggc       540
     cacggacatt ttcacagaga gatgaacgtg tgattgtgcg aaaggtacaa cagaatccga       600
     aaatatctgc cacacgaatt gcaagtgagg tggagggaga ccttggtata aaagttcatc       660
     ccgaaaccgt gcggagagta ctacgacgat cgcagtacca tggtcgagtg gcacggcgaa       720
     agccattcat aaatgcagtg aaccagaaga aacgtatgca gtttgcgagg gaatacgccg       780
     aatacgatca ggcttggtgg aatcgggtga tattttgcga cgaatgtaaa tttacattat       840
     ggcaaagcga cggaaaggca aacgtgtggc gaaagaccaa tgaagagctg aatcccagga       900
     acctcaaacc aacagtaaag tttggaggtg ggagcatcat ggtgtgggga tgcatgtccg       960
     gcaatggtgt gggtgattta gtgttcattg atgatacgat gaacaaggaa gcgtatttga      1020
     atatactgcg aggacatttg aagcagagtg cacgacatct aggtattgcg aacaactttc      1080
     atttttatca ggataatgat cccaagcata ccgcgcatat tgtacaaatg tggttgctct      1140
     tcaattgccc gaaagtattg cacccccctc cccaatcacc agaccttaac ccaatcgaac      1200
     atttgtggga taaattgaaa cggaccctcc gcgcggacaa catctatacg aaggagacct      1260
     tgaaagagaa actgcgccaa gaatgggcaa atataggccc agatttcacg aaaaaactcg      1320
     tggaaagtat gcctagtaga ttggaggagg tattgaaaat gaaaggtgga cccacaaggt      1380
     attgacattt tcgtcgtaca acttatgaac atttattgga cagtgtccga atacttttgt      1440
     agcagcaggg tgtgcaggtt gtttcatttt tgttgttaat ttttctgtta tttatgtttt      1500
     ggaaacgaaa taatacaata attcttttgt aattaatgtt gttacgcata tatattgcta      1560
     ataaatatgt ttgggtttca tagtcagtgt ttctcgagta ctcattgtga aacttcccac      1620
     tgtccgaata cttttgcgac tgagtg                                           1646
//
ID   Mariner-7_MMo repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6269-6269 (2021).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..1210
FT                 /product="Mariner-7_MMo_1p"
FT                 /translation="MIFLKRTHFQEILFVFLNASVFLFATVXTTFCSECLK
FT                 MSSFVPRKEYLRGILLHYFIQKKSAAEAHRILVETYGEHALSETTCRDWFR
FT                 RFKNDDFDLQDKERSGAPKKFKDEELEALLDVDACQTLAGLGKSLGVDDST
FT                 VSKRLKALGMIQKEGHWVPYELKPRDIERRRLTCELLLERQKRKGFLHRIV
FT                 TGDEKWIQYDNPKRKRSWGKPGHTSTPCAKPNIHGSKLLLCIWWDQLGVVY
FT                 YELLKPKETVTGDRYRLQLMRLSRALKEKRPQYEQRHDKVILLHDNARPHV
FT                 AKPVKTYLETLKWEVLPHPPYSPDIAPSDFHLFRSMAHGLAEQRFRSYEDT
FT                 KMWIDAWIAAKDVSFFRRGIHLLPERWEKVVSCDGLYFE"
XX
SQ   Sequence 1292 BP; 369 A; 260 C; 320 G; 342 T; 1 other;
     tataaggtgc ttgaataagt tctcgctgtt ttctaacaga tggtgtttcc agtaatataa        60
     gtggatgata tttctgaaac gaacgcattt ccaggaaata ctgttcgtat tcttgaacgc       120
     cagtgtgttt ctgtttgcca cagtgtnaac cacattttgt tctgagtgtt taaagatgtc       180
     gagttttgtg ccacgaaaag agtatttgcg gggaattcta ttgcattatt ttatacagaa       240
     gaaatcagca gctgaagcac accgaattct tgttgagacg tatggggaac atgctctgtc       300
     ggaaacgact tgcagagact ggtttcgacg gttcaaaaat gacgattttg atcttcaaga       360
     taaagaacgt tctggcgcac cgaaaaagtt taaagacgaa gaattggagg cattacttga       420
     tgtagacgcg tgtcagacgc tagccggcct tggaaaatca ttaggagtgg atgactcaac       480
     agtttccaaa cgtttgaaag cattaggaat gatccagaag gaaggacatt gggtgccgta       540
     cgagctgaag ccgagagaca tcgaacggag gcgtctcacg tgtgaactgc tgcttgaacg       600
     tcagaagagg aaaggttttc ttcaccgtat cgtgacgggc gatgaaaagt ggatccagta       660
     tgataacccc aagcgtaaga gatcgtgggg taagcccggc catacatcaa caccctgcgc       720
     aaagccaaat atccatggtt cgaagcttct cctttgcatt tggtgggatc agctgggcgt       780
     tgtttattat gagcttctca aaccaaagga aaccgtcacg ggagatcgct atcgtctgca       840
     attgatgcgt ttgagccgag ccctaaagga aaaacggccg caatacgagc agcgacatga       900
     caaggtgatt ttgttgcacg ataacgctcg gccacatgtc gcaaagccgg tgaaaacata       960
     cttggaaacc cttaaatggg aagttcttcc ccacccgcca tattcaccgg acatagcccc      1020
     ttctgatttt catttattcc gttcaatggc acatggcctg gctgaacagc gcttccgttc      1080
     ttatgaagat acgaagatgt ggatagatgc ttggatagcc gcaaaagacg tttcgttttt      1140
     tcgacgaggc attcatttgc tgccagaaag atgggaaaaa gtagtgtctt gtgatgggct      1200
     gtactttgag tgacgtgttg tgcaccacat tgcgtaaata aagcattgat tttcacaaaa      1260
     aaaacagcga gaacttattc aagcacctta ta                                    1292
//
ID   Mariner-7_PBa repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 19.03, Created)
DT   06-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 620-620 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..1225
FT                 /product="Mariner-7_PBa_1p"
FT                 /translation="MWQTLEVSMAAVVVKMEKDEFRAVIKHFYLKKWTAAQ
FT                 IKAELDEVHGDSAPALKTVYFWINEFKRGRTSTKDEARPGRPVEVTTPEMI
FT                 EKIHRIVMEDRRMKVRDIAEIVGISVDRVHNILHKELEMKKLCARWVPRLL
FT                 TIDQKRMRKDISQQCLSMLKRNPQDFWRRFVTVDETWIHHYTPESKQQSKQ
FT                 WTAPGECAPKKAKTVLSAGKIMATVFWDSQGIIFIDYLQKGQTVTGAYYST
FT                 LLNRLYEELQTKRPRLARKKVIFHHDNAPAHTSTVAMAKLHELRFELLPHP
FT                 PYSPDLAPCDFFLFPNLKIWLGGKKFSSDEEVIAAVDAYFEGLETSYFSEG
FT                 IKKLEHRWTKCVELQGDYVEK"
XX
SQ   Sequence 1293 BP; 382 A; 278 C; 315 G; 318 T; 0 other;
     cgagggtcgt tcgataagtc aggtaaattt ttgcgagata gcgccacaat gaactgtgta        60
     gtatatggcc aggaagtaac actattcaaa ctgcctcata ccaagtttca gccaaaagcg       120
     acgcttagtt tacatgtggc agacgttgga agtgagcatg gcagcagttg tcgtaaaaat       180
     ggagaaagac gaattccgtg cagtgattaa acatttttat ttaaagaagt ggacggctgc       240
     gcagattaaa gccgaattgg acgaagttca cggggactct gcaccagcgt tgaagaccgt       300
     ttatttttgg attaatgaat tcaaaagagg ccggacatca accaaagatg aagcgcgccc       360
     cggacgtcca gttgaagtca ctacgccaga aatgattgaa aaaatccatc gtatcgtcat       420
     ggaagatcgc cgaatgaagg tgcgtgacat agctgagatt gtaggcatct cagtagatag       480
     ggtgcataat atcctgcaca aagaattaga aatgaaaaag ctttgtgcac gatgggtgcc       540
     gcgattgctg accatcgatc aaaaacgcat gcgaaaagac atttcgcagc agtgtttgtc       600
     gatgcttaag cgcaatccac aagacttttg gcgtcgattc gtgaccgtag acgagacttg       660
     gatccatcac tatacacccg agtcaaaaca gcagtcgaag cagtggacag cgcctggtga       720
     atgtgcgccg aagaaggcga agactgtttt gtcggccggg aagataatgg ccactgtttt       780
     ttgggattcc caaggaatca tcttcattga ctacttacag aagggtcaaa cagtcacagg       840
     agcatattat tctacacttc tgaatcgttt gtacgaagag ctgcaaacga aacggccgag       900
     attggcgcgc aaaaaagtca tctttcacca tgacaatgct ccggctcaca cctccacagt       960
     cgcaatggca aaattgcatg aattaagatt cgaattgctg ccccatccac cctattctcc      1020
     tgatttggcc ccttgtgact tctttctatt cccaaacctc aagatctggc tcgggggaaa      1080
     gaaattttcg tccgatgagg aggtcatcgc tgctgtggat gcgtattttg aaggcctcga      1140
     gacttcctac ttttccgaag ggatcaaaaa attggaacac cgctggacta agtgtgtaga      1200
     gctccaagga gactacgtcg aaaagtgaaa aagaattttc cggaaaatag gtgattttat      1260
     tgctttttta cctgacttat cgaacgaccc tcg                                   1293
//
ID   Mariner-7_RPr repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3253-3253 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. 97% identical to Mariner-25_AEc,
CC   suggesting a horizontal gene transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1225
FT                 /product="Mariner-7_RPr_1p"
FT                 /translation="MELTRENFRAMIYYDFRRGLSRQECIDQLTSTFGDKA
FT                 PSFATVKRWYNEFNRGRRSLTDESREGRPKSVVVSENIDAVQKLIMQDRHV
FT                 TYCEIEATLGISSTSIYKILHDHLAVKKVCSRWIPHNLTKSQKDARVDWCK
FT                 QMLKKYNGGASKDVYKIVTGDESWIYAYEPETKQQSTVWVFQDEPNPTKVV
FT                 RARSTSKQMVACFFGKTGHVATVPLEERRTVNSEWYTTICLPEVFDEIRKT
FT                 NKRRRIILHQDNASCHTSRLTTDYLSTQKIELMGHPPYSPDLAPNDFFLFP
FT                 NVKNKLRGQRFSSAEEAVDAFKNHVLEVSQAEWKKCFDKWFERMQKCIDHK
FT                 GEYFEKQ"
XX
SQ   Sequence 1294 BP; 403 A; 248 C; 274 G; 369 T; 0 other;
     cgaggggcac tacttatatt ttgagccttg gcaacactga gtgttgtcag gtgctatctg        60
     acgtttccac ttgaaagttt gacatttttg accataacct tcttcagaac gttttgttat       120
     ttgagcgcga tttgtgttgt ttacagtcac ttgaaaattg tgtctcagcg aaaaaatgga       180
     attaactcgt gaaaattttc gtgcaatgat ttattacgac tttcgacgtg gattatcaag       240
     acaggagtgc atcgatcaac ttacttccac ttttggcgat aaagccccat cctttgccac       300
     tgtgaaacgc tggtataacg aattcaatcg tggtcgtcgt tcgctcaccg acgaaagtcg       360
     tgaaggtcgt ccaaaatcag ttgttgtgtc agaaaacatt gatgctgtgc aaaaactaat       420
     aatgcaagat cgtcatgtga catactgtga gattgaggca accttaggca ttagttccac       480
     cagcatatat aaaatattgc atgatcattt agccgtgaaa aaggtttgtt ctcgttggat       540
     cccacataat ctgacaaaat ctcaaaaaga tgctcgtgtc gattggtgca aacaaatgct       600
     taagaaatac aatggcggtg cttcaaaaga cgtgtataag attgtaacag gtgacgaatc       660
     atggatatat gcgtatgagc cggaaactaa acagcagtcg actgtatggg tgtttcaaga       720
     tgaaccaaat ccaacaaaag ttgttcgcgc tcgaagcact tcgaaacaaa tggtcgcctg       780
     ttttttcgga aaaactggtc atgtggcaac agtgccttta gaggaacgta gaacggtcaa       840
     ttctgaatgg tacacaacca tttgtttgcc ggaagtcttc gatgaaataa ggaaaacaaa       900
     caagcgccgt cggatcattc ttcatcaaga caatgccagc tgtcacacat ctcgtctaac       960
     aaccgactat ttgagcactc aaaaaatcga attaatgggt catccgccgt acagtcctga      1020
     tttggcacca aatgacttct ttttgtttcc gaacgtcaag aataaattac gtggacaacg      1080
     attttcgtcg gcagaagaag ccgttgatgc attcaaaaac catgttttgg aggtgtctca      1140
     agcggaatgg aaaaaatgct ttgacaagtg gttcgaacgc atgcagaagt gtatagatca      1200
     taaaggagaa tattttgaaa aacaataaag tcattttcaa tgacaaatta ctgttttttt      1260
     attattaggc tcaaaatata aatagtgccc ctcg                                  1294
//
ID   Mariner-80_HSal repbase;    DNA;    INV; 913 BP.
XX
AC   .
XX
DT   23-APR-2012 (Rel. 19.04, Created)
DT   23-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-80_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-913
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 927-927 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..833
FT                 /product="Mariner-80_HSal_1p"
FT                 /translation="MSVFVPNKHHLREVLLHYFIAKKSAAETYRLLVEIYG
FT                 DHAPSNTTCKEWFRRFQNNDFGTEDREHGKPPKKFEDAELEALLTEDCCQT
FT                 IKGEVYRRQLMRLKRAIEEKRPEWVNRHSKLILQHDNAKPHTAEVVKRYLD
FT                 GQDWEVLLHPPYSPDIAPSDYYLFRTMQSDLTGERFTSYESIKIWLDNWIS
FT                 SKDQDFFRQGIHKLPERWAKVVAADGAYFQ"
XX
SQ   Sequence 913 BP; 302 A; 167 C; 189 G; 255 T; 0 other;
     ttgggtgtgt gaatatgact ccgccctttc ccaacagatg ttgcttttag tattgttaac        60
     gtgtactaat aactggcaac acttgtattc gatagtactt catgtcaact ttcaaacgca       120
     ctacgtgaaa tttggtttaa gtgtaagcaa caagtgtttt accctacttg aaaatgtcgg       180
     ttttcgttcc aaacaaacat catttgcggg aagtattatt acactatttt attgcaaaga       240
     aaagtgcagc ggaaacttat cgtttgcttg tggagattta cggtgatcat gctccatcta       300
     atacaacttg taaggaatgg tttcgacgat ttcaaaataa tgattttgga actgaggaca       360
     gagaacatgg gaaaccacca aaaaaatttg aagatgctga attggaagca ttattgacag       420
     aggattgttg ccaaactatt aaaggagaag tttaccgacg acaactaatg cgtttgaagc       480
     gagccataga agaaaaacgg ccagaatggg tgaataggca cagcaaatta attcttcagc       540
     atgataatgc caaaccgcat accgcagaag tcgtgaaaag atatttagat ggacaggact       600
     gggaagtgct actccacccg ccatattcgc cagacatagc tccttcagat tactacttat       660
     tccggacgat gcagtcagat cttacgggag aacggttcac ttcatacgaa agtatcaaaa       720
     tttggcttga taattggatc agctcaaaag accaggactt cttcaggcaa ggaatacata       780
     aattacctga aagatgggcg aaggttgtag ctgcagatgg agcatacttt caataaactt       840
     ttctttaatt ttctaaacaa gcaaatgtgt tttattttaa caaaaaaggg cggagtcata       900
     ttcacacacc caa                                                          913
//
ID   Mariner-82_HSal repbase;    DNA;    INV; 896 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-82_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-896
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 928-928 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..817
FT                 /product="Mariner-82_HSal_1p"
FT                 /translation="MCGGERPPATFLSCCSLVSSTMTEQEVPTTVAQRIII
FT                 RFLANEGVKPTEILTRLQAQFGDGTLSRTQVFDWAKKFRSGRNAVENESHE
FT                 RRPRSSVTDENIRAVRELVEDDRRLTVVEISSEVGIRTAYRNKRRRQPIRD
FT                 VLLLHDNARPHTAALTRDKLGEMYWTPLEHPPYSPDLSPCDFHMFGPLKEA
FT                 LGGERFNDDAAVEQYVRNWLLERPSSFFDEGIKKLPIRWRKCISVEGNYVE
FT                 K"
XX
SQ   Sequence 896 BP; 243 A; 216 C; 220 G; 217 T; 0 other;
     cgagggtcat tcaaatataa accggatttt ttacctgcgg actcagaaag agccgcaagc        60
     gggccgaggc gctccaggca gttaggtaga gatgtgtgga ggggagcgac cccccgcaac       120
     attcctcagt tgctgttccc tcgtcagtag caccatgact gaacaagagg tacctacgac       180
     tgttgcgcaa cgcattatca tccgatttct cgctaacgaa ggcgtcaaac caactgaaat       240
     tttgaccaga ctccaagcac agtttggaga tggtaccctg tcaagaaccc aagtgtttga       300
     ttgggccaaa aaatttcgca gtggtcgtaa tgctgtggaa aacgaaagtc acgaacgtcg       360
     tccgcgatcg agtgtcactg atgagaacat tcgggccgtt cgcgaacttg tggaagatga       420
     ccggcgctta actgttgtcg aaatctcatc ggaggtgggc ataagaactg cttatcgcaa       480
     caaacgacgc cggcaaccca ttcgcgacgt tctgcttctc catgacaacg cgcggcctca       540
     tacagcagcc ttaacccgcg ataaactcgg agaaatgtac tggacacctc ttgaacaccc       600
     tccttacagt cccgatttat ccccatgtga ctttcacatg tttggacccc tgaaggaggc       660
     tttaggaggg gaaagattta acgacgacgc agcggttgag cagtacgtgc gcaattggct       720
     gttggagcgc ccttcttctt tttttgatga agggatcaag aagctaccta tccggtggag       780
     aaaatgcatt tccgttgaag ggaactatgt agaaaaataa tatatcgctt ttgtaatttc       840
     atctgttacc aataaatctg taaaaaaaaa tccggtttat atttgaatgg ccctcg           896
//
ID   Mariner-83_HSal repbase;    DNA;    INV; 2507 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.04, Created)
DT   04-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-83_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2507
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 929-929 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..1832
FT                 /product="Mariner-83_HSal_1p"
FT                 /translation="MASLSERERISLLMMRGWDDRLRSYNDVRRLFNETFR
FT                 NQGNAISKSTVERTIRRFQETGSVKNRAIPGRPVSATSVEKSLDVLQSFIE
FT                 NPHDSTRKVGQQHEIDQMSVLKILKMNKFHPYKIHLVQELNEDDFDRRIEF
FT                 CDLMMEKIAEDPNYLSNVVFSDEATFQLNGHVNRHNCRFWSDTNPHWIEET
FT                 HTQYPQKVNVWVGILNNVLIGPLFIDGNLTAIKYENMLRNEIVPAIQAIMD
FT                 DNFEHTWFQQDGAPPHYGRDVRNYLDTVFPHRWIGRRGPIEWPPRSPDLSP
FT                 NDYFLWGHLKDRVYKTKPQNLDDLRNRILDEAALIPADYIQKAVSSFYDRL
FT                 AYCQTVDGGHFEQLL"
XX
SQ   Sequence 2507 BP; 735 A; 502 C; 483 G; 782 T; 5 other;
     cagggtgaag aaaaaacccc gggacccctg aaaatttcga aaaatataca ctttataaaa        60
     aaatgtttca gacaaaagtt gtagcgttga aaaagatcta tttaccgatc ttaacaattt       120
     gaccttgggt ggcgtcatca aggtcaggac aaagtcacct cggatttttt aaatggaact       180
     cccaattttt tattgcatat tcttatagcc cttcttcaga ccttttcaaa gcactatggt       240
     tttatcaaat ttgaataagc tgttccgaag ttatcgagtt ttttaaagta agatatctag       300
     ccaactaagg caagatcgga ggatgatccg gccaactaag gcaaggtcgg agtgatcgag       360
     ccaactaaga caagatcgga ggatgatcca gccaactcgt aaaaataatt gcgcgactaa       420
     cttccaggcg ttggctccta ttggcttgtc ttaatttcgt tgattgattt atttcagtta       480
     tttatttatt tgtttaacta ttctgctgtt cgatgtttat ttcttccatt tactcattta       540
     atactcatta cagtttagtg aatcgcaaac tcgactgaaa ttcctctatt tttttgaaaa       600
     ttattaagaa acagtttgaa gctagttgta agctgactta attgcacttc attccgtgct       660
     cattattatt cttcagcact gtctttagaa taactttgaa ttgatccaaa tattaattta       720
     gtcgattaga ctaaatctta ccacttctgc ttgtcaatat ggcaagtctt tcagaacgag       780
     aacgcatatc tcttttgatg atgagaggat gggatgatcg actaaggtcg tacaatgatg       840
     tgaggcggct ttttaatgaa acttttcgta atcagggtaa tgccatttca aaatctaccg       900
     ttgaaagaac gataaggcgt tttcaggaaa ctggaagtgt gaaaaatcgt gcaataccag       960
     gtaggccagt atcagcaaca agtgtagaaa aatcattaga tgttctacaa tcctttatcg      1020
     aaaatccgca tgattcgacc cgcaaagtag gacagcaaca tgaaatagat caaatgtctg      1080
     tgcttaaaat attgaaaatg aataaatttc atccttataa gatccatctt gtacaagagc      1140
     taaatgaaga tgattttgat aggcgcattg aattttgtga tttgatgatg gaaaaaatag      1200
     ccgaagatcc taactatcta tcaaatgtag tattttcaga tgaggcaaca tttcagttaa      1260
     atggccacgt taatcgacac aattgtagat tttggtcaga tacaaatcct cactggattg      1320
     aagaaacaca cacgcagtat ccacaaaaag tgaatgtttg ggtaggcatt ttgaataatg      1380
     ttctcatagg tccactcttt attgacggaa atctaacagc gataaaatat gagaatatgc      1440
     taagaaacga aatagttcca gcgatacaag caatcatgga tgacaacttc gagcatacat      1500
     ggttccaaca agatggtgcc cccccacatt acggaaggga cgtccgtaat tatctggaca      1560
     cagtgtttcc tcatcgatgg ataggtagaa gaggacctat agaatggcct cctcgatcac      1620
     ccgatttatc acctaacgat tacttcctgt ggggccattt aaaagataga gtttacaaaa      1680
     cgaaaccaca aaatttggat gacttacgaa atcgaattct tgatgaagct gctctcatcc      1740
     ctgctgatta cattcaaaaa gccgtttcat ctttttacga tagattagct tattgtcaaa      1800
     ctgttgatgg cggacatttt gaacaattac tttaaagctt tccagtattg ccttagttgg      1860
     ccggatcatc ctacgatctt gccttagttg gccggatcat cctccgatct tgccttagtt      1920
     ggccggatca tcctccgatc ttgccttagt tggccggatc atcctccgat cttgccttag      1980
     ttggccggat catcctacga tcttgcctta gttggctgga tcatcctccg atcttgcctt      2040
     agttggccgg atcatcctcc gatcttgcct tagttggcta gatcatcctc cgatctcgcc      2100
     ttagttggcc ggacatccta cgatcttgcc ttagttggct ggatcatcct ccgatcttgc      2160
     cttagttggc cggatcatcc tacgatcttg ccttagwwgg ctsgatcawc ctccgatctt      2220
     gccttagttg gctagacakc ttacttcatc aaactcgatt acttaaaacc atagtgcttt      2280
     gaaaaggtct gaagaagggc tataagaata tgcaataaaa agttgggggt tccatttaaa      2340
     aaatccgagg tgactttgtc ctgaccttga tgacgccacc caaggtcaaa ttgttaagat      2400
     cggtaaatag atctttttca acgctacaac ttttgtctga aacatttttt tataaagtgt      2460
     atatttttcg aaattttcag gggtcccggg gttttctctt caccctg                    2507
//
ID   Mariner-84N1_HSal repbase;    DNA;    INV; 919 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   20-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-41_HSal; Mariner-84N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-919
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 930-930 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 919 BP; 270 A; 182 C; 201 G; 265 T; 1 other;
     aagggtgtcc caaaattcac gcaagatttg aattttgcgc catttgtgcg gtaaagtgtt        60
     gccaacgaaa aaaaaaagac agcgtgacag ctgacagttt agggttttta aactgaccac       120
     gcacagcgaa gagagttcgt tgaatggatt atggaacaac aacaagtgga tgctgatttt       180
     tcgaacaaaa tcatcttcag cgatgaggct cattttcatc ttgatggctt ggttaatcga       240
     caaaattgtc gcatttgggg ttcagaaaat ccacgagtga ttgttgagaa acaaatgcat       300
     ccacaacgtg tcactgtttg gtgcggattt tgggctggag gcatcatcgg accattcttc       360
     gkaagaaaat gcggctggtc aggcaataac agttaatggt gctcgctatc gcgacatgat       420
     aatccagttt tttgtgccta aattgcaaga tatggatgtg gacgacatgt ggtttcaaca       480
     agacggtgcc acatgccata cagcccgaga aacaattcaa ttactgcatg agtcatttcc       540
     tggtcgtgta atttcccgtt ttggtgatca gatttggccg cccagatcat gcgatttaac       600
     gccgttggac ttttttcttt ggggtttttt gaagtctaag gtttatgcca acaagcccac       660
     gaccacccac gccttgaagg aggaaattga gcgctgtatc aacgaaattc agccacattt       720
     atgcaaaacg gtcatggaaa atttcaacaa aagagtgcat atgtgccagc aaagccgtgg       780
     aggccattta cccgatatgc tattccatac ataaccctat actgtatact ttatgaatca       840
     ataaaaaatt tacaattttt aattataaac ctgtgttttc tatcaaaatt acttcttgcg       900
     tgaattttgg gacaccctt                                                    919
//
ID   Mariner-84N2_HSal repbase;    DNA;    INV; 934 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.04, Created)
DT   20-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-84N2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-934
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 931-931 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 934 BP; 282 A; 174 C; 198 G; 280 T; 0 other;
     aagggtgtcc caaaattcac gcaagaagta attttgatag aaaacacagg tttataatta        60
     aaaattgtaa attttttatt gattcataaa gtatacagta tagggttatg tatggaatag       120
     catatcgggt aaacggccac agcgaagaga gttcgttgaa tggattatgg aacaacaaca       180
     agtggatgct gatttttcga acaaaatcat cttcagcgat gaggctcatt ttcatcttga       240
     tggcttggtt aatcgacaaa attgtcgcat ttggggttca gaaaatccac gagtgattgt       300
     tgagaaacaa atgcatccac aacgtgtcac tgtttggtgc ggattttggg ctggaggcat       360
     catcggacca ttcttcttcg aaaatgcggc tggtcaggca ataacagtta atggtgctcg       420
     ctatcgcgac atgataatcc agttttttgt gcctaaattg caagatatgg atgtggacga       480
     catgtggttt caacaagacg gtgccacatg ccatacagcc cgagaaacaa ttcaattact       540
     gcatgagtca tttcctggtc gtgtaatttc ccgttttggt gatcagattt ggccgcccag       600
     atcatgcgat ttaacgccgt tggacttttt tctttggggt tttttgaagt ctaaggttta       660
     tgccaacaag cccacgacca cccacgcctt gaaggaggaa attgagcgct gtatcaacga       720
     aattcagcca catttatgca aaacggtcat ggaaaatttc aacaaaagag tgcatatgtg       780
     ccagcaaagc cgtggaggcc atttacccga tatgctattc catacataac cctatactgt       840
     atactttatg aatcaataaa aaatttacaa tttttaatta taaaactgtg ttttctatca       900
     aaattacttc ttgcgtgaat tttgggacac cctt                                   934
//
ID   Mariner-84_HSal repbase;    DNA;    INV; 1302 BP.
XX
AC   .
XX
DT   20-JUL-2012 (Rel. 19.04, Created)
DT   20-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-84_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1302
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 932-932 (2014).
XX
DR   [2] (Consensus)
XX
CC   A few copies, ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1194
FT                 /product="Mariner-84_HSal_1p"
FT                 /translation="MECYTKEQRVFIVEQYFKNNESLAATVRNFRTKYGRN
FT                 SDLTSSTVKRLIKKFRETGSISDLKHSGRPSTSRSTQNIEAVRESVVESPG
FT                 TSIRHRGQELDISRSSLQRILTKDLHLHAYKVQLTQELKPTDHAQRREFVE
FT                 WIMEQQQVDADFSNKIIFSDEAHFHLDGLVNRQNCRIWGSENPRVIVEKQM
FT                 HPQRVTVWCGFWAGGIIGPFFFENAAGQAITVNGARYRDMIIQFFVPKLQD
FT                 MDVDDMWFQQDGATCHTARETIQLLHESFPGRVISRFGDQIWPPRSCDLTP
FT                 LDFFLWGFLKSKVYANKPTTTHALKEEIERCINEIQPHLCKTVMENFNKRV
FT                 HMCQQSRGGHLPDMLFHT"
XX
SQ   Sequence 1302 BP; 396 A; 254 C; 278 G; 374 T; 0 other;
     aagggtgtcc caaaattcac gcaagatttg aattttgcgc catttgtgcg gtaaagtgtt        60
     gccaacgaaa aaaaaagaca gcgtgacagc tgacagttca gggtttttaa aatggagtgc       120
     tacacgaaag aacaacgcgt tttcattgtt gagcaatatt ttaaaaataa tgaaagtttg       180
     gcagctacag ttcgcaattt tcgtacaaaa tatggtcgga atagtgattt aacttcatca       240
     actgtgaaga gattaattaa aaaatttagg gagactggat caattagtga tcttaaacac       300
     tctggccgtc cttcaacaag tcgttcaaca caaaacatcg aagcagttcg tgagagtgtt       360
     gttgagagtc caggaacatc aattcggcac cgtggtcaag aattggacat ttcgagaagc       420
     tctctacagc gtattctcac gaaagatttg catcttcatg cttacaaagt tcaattgact       480
     caagaactga agcctactga ccacgcacag cgaagagagt tcgttgaatg gattatggaa       540
     caacaacaag tggatgctga tttttcgaac aaaatcatct tcagcgatga ggctcatttt       600
     catcttgatg gcttggttaa tcgacaaaat tgtcgcattt ggggttcaga aaatccacga       660
     gtgattgttg agaaacaaat gcatccacaa cgtgtcactg tttggtgcgg attttgggct       720
     ggaggcatca tcggaccatt cttcttcgaa aatgcggctg gtcaggcaat aacagttaat       780
     ggtgctcgct atcgcgacat gataatccag ttttttgtgc ctaaattgca agatatggat       840
     gtggacgaca tgtggtttca acaagacggt gccacatgcc atacagcccg agaaacaatt       900
     caattactgc atgagtcatt tcctggtcgt gtaatttccc gttttggtga tcagatttgg       960
     ccgcccagat catgcgattt aacgccgttg gacttttttc tttggggttt tttgaagtct      1020
     aaggtttatg ccaacaagcc cacgaccacc cacgccttga aggaggaaat tgagcgctgt      1080
     atcaacgaaa ttcagccaca tttatgcaaa acggtcatgg aaaatttcaa caaaagagtg      1140
     catatgtgcc agcaaagccg tggaggccat ttacccgata tgctattcca tacataaccc      1200
     tatactgtat actttatgaa tcaataaaaa atttacaatt tttaattata aacctgtgtt      1260
     ttctatcaaa attacttctt gcgtgaattt tgggacaccc tt                         1302
//
ID   Mariner-85_HSal repbase;    DNA;    INV; 1265 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-85_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1265
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 933-933 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1188
FT                 /product="Mariner-85_HSal_1p"
FT                 /translation="MERILCPLLSVEKWFKRFRNGDYDVNDKPRSGRPNEM
FT                 ENNELEALLNENSAQTLKELAGQLEVDESTVSRHLKAMGKIQKEGRWLPHE
FT                 LSANAIANRLTICLSLLARHKKDFGREKWIYFDNPKRKKSWIDPGQLSIST
FT                 TKRNIHGHKVLLCIWWDQEGVLYYELLLPGQTVTGDRYSQQLWRLNQAMKE
FT                 KRPQIAANRRKVILLHDNVRSHVAVATKETLFELDWEVLPHPAYSPDIAPS
FT                 DFHLFRSMQHGLSDTQFRNAEEVRKWVDEWIASKDESFYRRGIKLLPERWQ
FT                 KVIDSNGQYFD"
XX
SQ   Sequence 1265 BP; 395 A; 262 C; 281 G; 327 T; 0 other;
     ttaggtgttt gcaaaagttc gtaagatcac aaatagatgg ctgtagcagc gacttagtaa        60
     ttattaataa ttgttttcct ttaagttgct ttttagtttt caaatgttgg ccatactcga       120
     tcagaattga tggttgacaa ttcatagttc cgaacaaaac gtcacattta acgcgattga       180
     agatggaacc agataaagtt catcttcgcc actgcatgct ttaccacttt aatcgaggtg       240
     aaactgctgc aacaactaaa agactgattt gtgagaccta tggagagaat attgtgtccg       300
     ctgctgtctg tggagaagtg gtttaaaagg tttagaaatg gtgattacga tgtcaacgac       360
     aagccacgtt ctggtcgtcc aaacgagatg gagaacaacg aattggaagc attgctcaac       420
     gaaaactcgg cccaaacatt aaaagagctt gcagggcagc ttgaagttga tgaatcaaca       480
     gtatcccgcc atttgaaagc aatgggaaag atccagaagg aaggaagatg gcttccccat       540
     gaactctctg caaacgcgat tgcgaaccgg cttaccatct gtctctcatt gcttgccagg       600
     cacaaaaaag attttgggag ggaaaagtgg atctattttg acaatcctaa acgcaaaaag       660
     tcatggattg atcccggcca actatcgata tccacaacaa aacgcaacat ccacggtcat       720
     aaggttctcc tgtgtatctg gtgggaccaa gaaggagtgc tttactatga gctattacta       780
     ccggggcaga cagtcacagg agatcgctac agtcaacaat tatggcgttt gaaccaagcc       840
     atgaaggaaa aacgccctca aatagccgcg aatcgacgca aagtcatcct gcttcacgac       900
     aacgtcaggt cgcatgttgc tgttgcgact aaagagacgt tgttcgagtt agattgggaa       960
     gtcctgccgc acccagcgta ctctccagac atcgccccat ctgattttca tctattcaga      1020
     tcgatgcagc acggtctatc tgatacacag ttccgaaatg ctgaggaagt gcgaaaatgg      1080
     gtcgatgaat ggattgcctc aaaagatgag tcattttatc ggcgcgggat caaactattg      1140
     cccgaaagat ggcaaaaggt tattgacagc aacggccaat actttgatta aaatattatg      1200
     tcatctcatt gttattaata aataaaaatg gctttaatat cgtacaaact tttgcaagca      1260
     cctaa                                                                  1265
//
ID   Mariner-87N1_HSal repbase;    DNA;    INV; 874 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-87N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-874
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 934-934 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 874 BP; 292 A; 158 C; 194 G; 230 T; 0 other;
     cagtctgttt gataagagcg tgtccggcaa aacttttaca tggaaaccgt taaacgggaa        60
     attccaacgg gagctggtag agggactttc cctaagatgc tttgtagaga aagcttcagt       120
     tgtcgttcga ctttcatgat agaaagacat atttcgccat gagtgccgca tacgcatcgc       180
     gattcaaagt cgtgtttctc tgtacacatc cgaaaggacc gaaaatgtca cgccaagcgg       240
     ctgctaaata catgagaagg tctaaggcat atgtaaataa gtgggtgaat cgctacttag       300
     aggtgaaaag acgtcggaaa agagatgcac gtttggagct gcttctcaaa gcaaggattt       360
     ggcactttgc atatcttcac aggcaacttg aacgctgcca aaatggtcaa aatttatgag       420
     aggactttat taccatctgc ccaaaagtgg tttaaaagga aaaacgaaaa atggctacta       480
     caagaggaca atgacccaaa acatcggaat cgtttttcta ccgcatggaa acaagaaaat       540
     gacgttgaca tactggattg gccgtcacag acaccggatg taaattccat cgaaaacgtt       600
     tgggcattga tgaagcttaa gcttcgtgga aagaaaattt agaaggtcaa gaagttcgac       660
     aaattcgatt gattttggag atctttacct caagaatatg ccataaaatt agtaagaaag       720
     atgccatgca attattgata atggaggcga ctggacaaat tattaataat aaagcatcac       780
     agttctaatc aagtagtatg tgtgtatttt tttccaagtc attacaataa attgttttcg       840
     agttatgccg gacacgctct tatcaaacag actg                                   874
//
ID   Mariner-87N2_HSal repbase;    DNA;    INV; 899 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-87N2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-899
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 935-935 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 899 BP; 302 A; 176 C; 176 G; 245 T; 0 other;
     cagtctgttc aacaagaaag tgtgggtgat atttttgtag aaaatcatag tagcaccatc        60
     taccttatac cgtttgaatc ttgaaactaa cttcttttgc gcagtgtaca tcaaaaagtt       120
     gcgttgagta gtcgttaaaa gtaaacatta tttttaaaaa tgagtgtaaa atatttgaag       180
     cgttaggagg cggtgtttct tattaaccat tctaaaggac caaaattaac aatcgcggca       240
     actgctagag caattaaaaa gtcagaggct ttcgtaagga agtgagtaaa tagattcaaa       300
     accgctggaa atgttgacga cctgccagaa agggggctgt ctcatgcaac gactccgaag       360
     gaggacaaag cgatcttgtg tctctttcag acgaatccca gtcttaccct gcgttaggcc       420
     caagtaaaac tccgccgaaa aggtcaacat atctcgctta ataccatcag aagccgcctg       480
     catgaaaatg atgtggcatc accacatttc ggtccaccat gaaaaaaccg ctgctgtcag       540
     aaaagctcga aaatggcata actatgatgg attggccggc attctctcca gacgcaaatc       600
     ccatcgaaaa tgtgtggtca taccttaaga tgaaacttaa aggaaagcgt gtcttcactt       660
     ttaagcagct gtgcataaaa ataaaaacaa tatggcgttc tttaccagaa tacgccgaaa       720
     atctggtcga aaatatgcaa aaacggtgcc aagcaataat tgataatgga agcgactgga       780
     tcaaatatta ggtaattgcg cattactaaa aatcttctat tttcgtttaa aaaaaacaac       840
     ttgactttat cttttattct tttcagatta tcaccaacgc tttcttgttg aacagactg        899
//
ID   Mariner-87_HSal repbase;    DNA;    INV; 1269 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-87_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1269
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 936-936 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1152
FT                 /product="Mariner-87_HSal_1p"
FT                 /translation="MSAAYASRFEAVFLCTHPKEPKMSRQAAAKYMRKSKA
FT                 FVNKWVNRYLEVKNVDDLPERGSTQKTTDKEDKLILRMFANNTRLSLRGGQ
FT                 AALKKGLNISCDTIRRRLRAHNVKYRSTVKKPLLSEKHVEKRIAWAQENMD
FT                 RDWGNVIFSDEASFWADTSITRTWCTPTNRLVQRTVKHPVKVHVWGCFSKQ
FT                 GFGTLHIFTDNLHAAKMVKIYEKALLPSAQKWFIRKNEKWILQEDNDPKHQ
FT                 SRLCTAWKQENDVELLDWPSQSPDANPIENVWSWMKLKLQGKKIWKVKELV
FT                 RQIKLIWRSLPQEYAIKLVESMPRRCQAIIDNEGDWTSY"
XX
SQ   Sequence 1269 BP; 417 A; 245 C; 283 G; 324 T; 0 other;
     cagtctgttt gataagagcg tgtccggcaa aacttttaca tggaaaccgt tagacggaaa        60
     ttccaacagg agctggtaga gggacatttc gcctaagatg ctttgtagag aaagcttcaa       120
     ttgttgttcg accttcgtga caaaaagaca tatttcgtca tgagtgccgc atacgcatcg       180
     cgattcgaag ccgtgtttct ctgtacacat ccgaaagaac caaaaatgtc gcgccaagcg       240
     gctgctaagt atatgagaaa gtctaaggca tttgtaaata agtgggtgaa tcgctactta       300
     gaggtgaaaa acgtcgatga cttaccggaa cgtggttcta cgcagaaaac gacggacaaa       360
     gaggacaaac tgattctacg gatgtttgcg aacaatactc gtctatcgtt gcgaggcgga       420
     caagcagcat tgaagaaagg tctaaatata tcatgtgaca caataagaag acgtctacgt       480
     gctcataatg tgaaatatcg aagcacagtg aagaaacctc tactgtccga aaaacacgtc       540
     gagaaaagaa ttgcttgggc gcaagaaaat atggaccgcg attggggcaa tgtaattttt       600
     tccgacgaag cttccttttg ggcagatact tctatcactc gaacctggtg tacccccact       660
     aatagactcg tccagcggac cgttaaacat ccggtaaagg tgcacgtttg gggctgcttc       720
     tcaaagcaag gatttggcac tttgcatatc ttcacagaca atttacacgc tgccaaaatg       780
     gtcaaaattt atgagaaggc tttattacca tctgcccaaa agtggtttat aaggaaaaac       840
     gaaaaatgga tactacaaga ggacaatgac cctaaacatc aaagtcgtct ttgtaccgca       900
     tggaaacaag aaaatgacgt tgaattactg gattggccgt cacagtcacc ggatgcaaat       960
     cccatcgaaa acgtttggtc ctggatgaag cttaagcttc agggaaagaa aatttggaag      1020
     gtcaaggagt tagttcgaca aattaaattg atctggagat ctttacctca agaatatgcc      1080
     ataaaattag ttgaaagtat gcctcggaga tgccaagcaa ttattgataa tgaaggcgac      1140
     tggacaagtt attaataata aagcatcaca gttctaatca agtaatatgt gtgtattttg      1200
     ttccaataaa tttcattaca ataaattgtt tatcgagttc tgccggacac gcttttatca      1260
     aacagactg                                                              1269
//
ID   Mariner-88_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   28-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-88_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 937-937 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~84% identical to consensus.
XX
SQ   Sequence 1288 BP; 424 A; 244 C; 267 G; 353 T; 0 other;
     tgaaggctgt ttaataagtc agtgactttg acagagagat ggcgctcaaa tcgcaagtct        60
     aattttattt ttgacatttg ctatcttatt taagtataca cacaaaattt caagtagatc       120
     tgtcaaatag aaattttttg atagcgtttg aaagcggata agtttgtgtt tctttgctac       180
     aattggaaaa aagtgaattc cgtgtgctga taaagcatta ttttttgcat ggaaaaatca       240
     ttaaggaaac tgaagaaaag ctaaaaaagt attataggga ctctgctccg tcgcatggaa       300
     tagttcacaa gtggttcact gaatttcgtt atgaccgtac aagcacgaat gatgctaagc       360
     gcccaggacg tccgaatgaa gtcacaactg aagaaatggt caataaaatc catgatattg       420
     tgttggacga ctgtcgagta aagatacgcg agatagctaa gatggtaaac atctcagacg       480
     aacatgtttt tcatatcctg catgaacatt tgagcatgag aaagctatcg gcaagatggg       540
     tgccgtgttt gctcacagtt gaccaaaaac ggaatcgcgc gaccatttcg aagcagtgtt       600
     tggacatgtt caagcgcaat ccaagtgagt ttttgcggcg atatgtaacc gttatgatga       660
     aacatagatc catcactaca ctccagaaat gaaagagcaa tcaaaacaat ggatttctcc       720
     tggcgaacgt gctccgaaga agacaaaaac ggttccatcg gtcggaaagg tcatggctac       780
     aattttctgg gattcgcatg gcataatctt tatcgactac ctggaaaaag gagaaacgat       840
     cacaggatta tgcctcctta ttggatcgat ttcatgttga attgatggaa aagcggcccc       900
     atttggcgaa gaaaaaaatt ctctttcacc acgacaatac accagctcac atgtctgcaa       960
     ttgccatggc caaaattatc gaattgcgct acgaactgct ccctcatcta ccctattctc      1020
     cagatttggc cccttgcgac ttctttctct ttgcaaacat gaaaaaatgg tggaaaaaga      1080
     ttcgcatcga acgaggaggt catcgctgaa acaaacgcct attttgcaga atttgagaaa      1140
     tcatattttt tggaaggctt aaagaagttg gaaaatcgtt gggcaaaatg tatcgaacta      1200
     aaaggagact atgccgaaaa ataaatcgaa tttcggtaaa aaaaattctt tcatttcaaa      1260
     gtcactgact tatcaaacac ccctcgta                                         1288
//
ID   Mariner-89_HSal repbase;    DNA;    INV; 1605 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-89_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1605
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 938-938 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(352..861,827..1363)
FT                 /product="Mariner-89_HSal_1p"
FT                 /translation="MSKQRKEFSVHLRNLIISDCKNKLSYRKIAEKYKVSK
FT                 SAVHKIYTKYLQHNTVENVHGRGRRRNTSAYDDRRIVREAQRNPSTTSRNI
FT                 VEQLQLNISSRTVRRRLKEVGLKSCVSRRKPYINKVHKKKRLAFAKKYVNK
FT                 PLSFWKRIIWSDESKFELLNKKKSTRVEETEIKKRAHVWRKPNEALKKQYV
FT                 VPTVKYGGGAIMIWACFSWYGIGNLVAIDGIMNADKYIDILNENLEESILK
FT                 MDLDREWMFQQDNDPKHTAKKTKQFFQNCKIEVLEWPPQSPDLNPIENLWS
FT                 LLDAEIPLEKRNNKEEFLNELQLKFQRIDKHYLEKLVESMPRRLQAVIKAK
FT                 GYNTKY"
XX
SQ   Sequence 1605 BP; 621 A; 216 C; 276 G; 492 T; 0 other;
     cagtcgtgga caaaattaag tggacactgc ataaattttg gcaaatcctc tgtttcattc        60
     caatgttgta aataaatttt aaattttgaa cgtaaaatat tcttgttgac atgaaagaac       120
     attaatttag tatatataat tgtaaaaaca gtgtttctgt aactgtttac atatatttat       180
     tcatatggtt agcatttaga ccttggacaa aattaagtgg acaaacagaa aattttatat       240
     tcaaagtgga acaatataaa caaacgttga gctttaccta atatgtgatg ttattgcgtc       300
     ctcagtgtac gttgatcctt gtaccagtac aatcaaagtt aataaacaga catgtctaag       360
     caaagaaaag agttttccgt tcatctgcga aatctaatta tttcagactg caaaaataag       420
     ctaagttatc gtaaaatagc cgaaaaatat aaagtttcga aaagcgcagt tcataaaatt       480
     tatacaaaat atttacaaca taatactgtc gaaaatgtac atggtcgggg acggagacgt       540
     aacacaagtg catacgatga cagaagaatt gtgagagaag ctcaacgtaa cccatcgaca       600
     acgtcacgaa acattgttga acaactacaa ttaaacatat cttcaagaac tgtgaggcga       660
     agattaaaag aggtgggttt aaagagttgt gtaagtagac gtaaaccata cattaataaa       720
     gtgcataaaa agaaacgttt agcttttgca aaaaaatatg taaataagcc attatcattt       780
     tggaaacgaa taatatggag cgatgaaagt aaatttgaat tattgaataa aaaaaagagc       840
     acacgtgtgg aggaaaccga atgaagctct aaagaagcaa tatgttgtac caacagtcaa       900
     gtatggagga ggtgcaataa tgatatgggc ttgtttttcg tggtatggga ttggaaattt       960
     agtagctata gatggaatca tgaatgctga taaatatatt gacattttaa atgaaaactt      1020
     agaagaatca attctaaaaa tggatctcga tagggaatgg atgtttcagc aagacaatga      1080
     tccgaagcac acagcaaaga aaacgaaaca atttttccag aattgtaaaa tagaagttct      1140
     tgaatggcct ccacaaagtc cggaccttaa cccaatcgaa aatttatgga gtttactgga      1200
     tgcagagatt ccattagaaa aacgcaataa taaagaagag tttttaaatg aattgcaact      1260
     aaaatttcaa agaattgata aacattatct ggaaaaactt gttgaaagta tgccacgacg      1320
     tttacaagca gtaataaaag caaaaggcta caatacaaag tattaatact tactttgtat      1380
     aaagtgtcca cttaattttg accatgtgca gttttatgtt attatcatta atcaataaaa      1440
     attctaatat attatttgtt acaattggtt tttctttata ttttgtcaaa ttatacttcg      1500
     ttaatttaaa taagcaataa aggtttgatt tttgacatta ttagttaaat taaattaacc      1560
     ttttgttatt tatgatacct gtccacttaa ttttgtccac gactg                      1605
//
ID   Mariner-8N1C_CFl repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-8N1C_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 808-808 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus.
XX
SQ   Sequence 868 BP; 294 A; 149 C; 157 G; 268 T; 0 other;
     cagggtctac caaaagtgtg gaaaccccta aatatctcgg aaaatatacg ttttacagaa        60
     aagtgtttcc aacaaaagtt gtagggttta agaagatcta tatactgatt ctatcagttt       120
     gaccttggat ggcgtcgtca aggtcaggtc aaggtcacat tgactttttt aaatgacacc       180
     ccctacattt gattgcatat tcttatagct taattcaaga aaaacataca gttgttttta       240
     agaaaaaata tggaattgtt aattgcaaat tacatatttt ttcttagaaa caactatgtg       300
     ttttctttac accaattgat tcctctcatt aatttgtaca taaaagtatg aaggtaagat       360
     aatcgaaaaa tgaatggttt actagatatt ttatggttta tgtaaaatta agaaattatt       420
     tcaaccctca taactcgcaa agtacttaat aaaaatgaac attattatag tgttttggaa       480
     agctcttgaa ttaagctata agaatatgca atcaaatgta gggggtgtca tttaaaaaag       540
     tcaatgtgac cttgacctga ccttgacgac gccatccaag gtcaaactga tagaatcagt       600
     atatagatct tcttaaaccc tacaactttt gttggaaaca cttttctgta aaacgtatat       660
     tttccgagat atttaggggt ttccacactt ttggtagacc ctgtatacag ggtgacctat       720
     tttaacttag gcagccaaat aactcgaaaa ataagcacac tacgaaaaaa tggttagaat       780
     caaaatttcg tcatttcgag ggggacgtac aatgacgtta aaatcagccc ccccacccct       840
     ccccccgggc ggggaggggg ggggaggt                                          868
//
ID   Mariner-8N1D_CFl repbase;    DNA;    INV; 791 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-8N1D_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-791
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 809-809 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 791 BP; 263 A; 132 C; 128 G; 267 T; 1 other;
     cagggtgtcc caaaagtccc ggaccggtcg aatatttcat aaactatgca ctttagaaag        60
     aaatgtttca gacaaaagtt gtatggcttg aagggggcca tcagatagtg gcaatgattt       120
     gacatgggag agtcatttga aagtcacgtg aagatcaccg tcaatttctt aaatggaacc       180
     ccctattttt tattacatat tcgtgtagct tatctcgaga gctttccaaa acactataat       240
     aaagtatttc ttcattgagt acttttcgag ttatgaggct tgaaatcatt tcttaatttt       300
     gcataaacca taaaatatct tgtatttaaa aaaaaaatgt aattgttaat tgcaaattac       360
     atattttttt cttaaaaaca actatgtktt ttctttacac caattgattc ctctcattat       420
     tttgtacata aaattattaa ggtaagataa tcgaaaaatg aatattttac tagatatttt       480
     atggtttatg caaaattaag aaatgatttc aagcctcata actcgaaaag tactcaatga       540
     agaaatactt tattatagtg ttttggaaag ctctcgagat aagctacacg aatatgtaat       600
     aaaaaatagg gggttccatt taagaaattg acggtgatct tcacgtgact ttcaaatgac       660
     tctcccatgt caaatcattg ccactatctg atggccccct tcaagccata caacttttgt       720
     ctgaaacatt tctttctaaa gtgcatagtt tatgaaatat tcgaccggtc cgggactttt       780
     gggacaccct g                                                            791
//
ID   Mariner-8N1E_CFl repbase;    DNA;    INV; 884 BP.
XX
AC   .
XX
DT   12-JUN-2012 (Rel. 19.04, Created)
DT   12-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-8N1E_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-884
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 810-810 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 884 BP; 306 A; 135 C; 137 G; 306 T; 0 other;
     cagggtgggc cattttaagt gatccacccc aataactttt ttatatttga atgtacaaca        60
     aaatgtttca aataaaagtt gcttgacttc gagggggaca gaagatgggt ggcaaaaatt       120
     tgaccttgga tagtcatttg aaggtcacat aaaggttacc ttcaatttct taaatggaac       180
     cccctatttt tcattgcata ttcttgtagc ttatctcgag agctttccaa aacactataa       240
     ttaagtacct tttcattaag tacttttcga gttatgaggc ttgaaataat ttcttaattt       300
     tacataaacc ataaaatatc tagtaaacca ttcatttttc gattatctta ccttgatact       360
     tttatgtaca aaataatgag aggaatcaat tggtgtaaag aaaacataca gttgttttta       420
     agaaaaaata tggaattgtt aattgcaaat tacatatttt ttcttagaaa caactatgtg       480
     ttttctttac accaattgat tcctctcatt attttgtaca taaaagtatc aaggtaagat       540
     aatcgaaaaa tgaatggttt actagatatt ttatggttta tgtaaaatta agaaattatt       600
     tcaagcctta taactcaaaa agtacttaat gaaaaggtac ttaattatag tgttttggaa       660
     agctctcgag ataagctaca agaatatgca atgaaaaata gggggttcca tttaagaaat       720
     tgaaggtaac ctttatgtga ccctcaaatg actatccaag gtcaaatttt tgccacccat       780
     cttctgtccc cctcgaagtc aagcaacttt tatttgaaac attttgttgt acattcaaat       840
     ataaaaaagt tattggggtg gatcacttaa aatggcccac cctg                        884
//
ID   Mariner-8N1_CFl repbase;    DNA;    INV; 882 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-8N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-882
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 811-811 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus.
XX
SQ   Sequence 882 BP; 306 A; 133 C; 136 G; 307 T; 0 other;
     cagggtctac caaaagtgtg gaaaccccta aatatctcgg aaaatatacg ttttacagaa        60
     aagtgtttcc aacaaaagtt gtagggttta agaagatcta tatactgatt ctatcagttt       120
     gaccttggat ggcgtcgtca aggtcaggtc aaggtcacat tgactttttt aaatgacacc       180
     ccctacattt gattgcatat tcttatagct taattcaaga gctttccaaa acactataat       240
     aatgttcatt tttattaagt actttgcgag ttatgagggt tgaaataatt tcttaatttt       300
     acataaacca taaaatatct agtaaaccat tcatttttcg attatcttac cttcatactt       360
     ttatgtacaa aataatgaaa ggaatcaatt ggtgtaaaga aaacatacag ttgtttttaa       420
     gaaaaaatat ggaattgtta attgcaaatt acatattttt tcttagaaac aactatgtgt       480
     tttctttaca ccaattgatt cctttcatta ttttgtacat aaaagtatga aggtaagata       540
     atcgaaaaat gaatggttta ctagatattt tatggtttat gtaaaattaa gaaattattt       600
     caaccctcat aactcgcaaa gtacttaata aaaatgaaca ttattatagt gttttggaaa       660
     gctcttgaat taagctataa gaatatgcaa tcaaatgtag ggggtgtcat ttaaaaaagt       720
     caatgtgacc ttgacctgac cttgacgacg ccatccaagg tcaaactgat agaatcagta       780
     tatagatctt cttaaaccct acaacttttg ttggaaacac ttttctgtaa aacgtatatt       840
     ttccgagata tttaggggtt tccacacttt tggtagaccc tg                          882
//
ID   Mariner-8_ACe repbase;    DNA;    INV; 1267 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1267
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 517-517 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 89% identical to the consensus.
XX
SQ   Sequence 1267 BP; 412 A; 265 C; 254 G; 336 T; 0 other;
     ttaggtgtac aaattaattc tcggccccta ccttcgcagc gacctctcag aatcatttaa        60
     gttgaacttt ctccgccccc tctatagtca ttttgaagtg ccatctttta gctttaaaat       120
     gaggtacaat acttgatctt cctgtgaaca tacctgaaat atcagcagta aacacgatgt       180
     cgttcgaaaa gcaacatttg aggcactgtc ttcttttcgc gtttcaactt aaaaaaaacg       240
     ttactgaggc gaaagaaatg atttcttcgg ctttgggcga gaatgctgta tcgtacagca       300
     cgtgtaaaaa atggttccaa cagtttcgag agggaaattt cgaccttgag gatcgtgaat       360
     cgccctggtc aaccaaaaaa aagtggaaga cgaggagttg gagaacattt tggacgagaa       420
     ttcttgccaa acccaatcgg aacttgcaaa tgcgcttgga ataacacagc aagacgtttc       480
     ctatcgccta aaacagctgg gaaggattca caaggaatgt cgatgggtcc ctcataagct       540
     cactcccgaa aacaaaagca gacgtcacga tactgctctc ttcttgcttt ctcaggttca       600
     agaaaaagga ctttttgcac aaaattgtta cttgcgatga aaagtggata ttatacgata       660
     atcctaagag gcgaaaagca tggatccatc cagatgagcc gtcaacgaac atcacaaaac       720
     cgaacatcca tacaaaaaaa gttgctatgc atttggtggg atcagaaggg cgtgatccac       780
     tatgaattgc tccgacaaga tcacagcttt atcaacagca attaattcgt atatgacgct       840
     cttgaagaaa aaaggccatt tactggcagt ggaagaagaa aggtgatact gctgcaggat       900
     aataccccgt ataaaaaaca ctctggaaac catctccgat ttaggctggg aaattctccc       960
     tcatgcggca gcgtattctc cagacttagc tccccttcgg attatcatct atttcgagcc      1020
     ctacaacatc acctaactga ttctcgattc aagtcagttg aagagatcga aaaaagcctg      1080
     attcagaatt cattaattca aagccaccat catttttccg atctggaatc tggcaattgc      1140
     ctgagagatg aaaaaaaatg tataaacagc gagggagatt attttgaaga ttgagtttgt      1200
     attcatgttt ttataaataa atgtcaaagt tggtcaaaaa aggccgagaa ttaatttgta      1260
     cacctaa                                                                1267
//
ID   Mariner-8_AEc repbase;    DNA;    INV; 1283 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1283
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 551-551 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           176..1201
FT                 /product="Mariner-8_AEc_1p"
FT                 /translation="MERDKLFFRRVLLHYFDLKKSAAETHRLLAEIYGESA
FT                 PSETVCRDWFRRFKSGDCDVHDKQRTGQPKKFEDEQLQALLEENPAQTLKE
FT                 LSQQLKVDKSTILRRLQAMGKIQKEGKWQPHELTENAIANRLNISISLLAK
FT                 HNKKSFLWRIVTGDEKWIFFDNPKRKESWVDPGQPSISTPKRNIHGHKAML
FT                 CIWWDMEGVVYYELLKPNETITAERYQQQLERLNDNLMQKRPSIASNRRKV
FT                 ILLHDNARPHVAIAVKQTLIDLEWEVLPHPAYSPDLAPSDYHLFRSMQHAL
FT                 EDTHFHNYSEVENWVAEWIDSKDRPFFRRGIQLLPEKWQKVIASEGKYFD"
XX
SQ   Sequence 1283 BP; 425 A; 253 C; 255 G; 350 T; 0 other;
     tattaggggt ttgcattaaa agccactgtt cacgtttaga tggcagtaac tgcgtatgct        60
     atggtcagag acatctgcta cttatatcat ttttaaatgt gaacatttcc tactaaaatt       120
     cagtcaacag acgtcatcct tgtttacata tgtgcttttc tataactgaa ttaaaatgga       180
     acgtgataag ttgtttttcc gacgtgtact tctacactat tttgatttga aaaaaagtgc       240
     agctgaaact catcgattgc ttgcggaaat ttatggtgaa tctgctccat cggaaacagt       300
     atgtagagac tggtttcgac gattcaaaag tggtgattgt gacgttcacg acaaacaacg       360
     aacaggtcaa ccgaaaaaat tcgaagatga acaactgcaa gctctattgg aagaaaatcc       420
     agctcaaaca ctcaaagaat tgtctcaaca actgaaagtc gataaatcaa ctattttacg       480
     acgtttacaa gctatgggaa agattcagaa agaaggaaaa tggcagccac atgaattgac       540
     cgaaaatgcc attgccaacc gtttaaacat ctcaatttct ttgcttgcaa agcataacaa       600
     gaagagtttc ttgtggcgta tcgtgaccgg cgatgaaaaa tggatctttt tcgacaaccc       660
     aaaacgcaaa gaatcatggg ttgatcctgg ccaaccatca atatcgactc caaagcgaaa       720
     tatccacggt cacaaagcaa tgctctgtat ttggtgggat atggaaggtg tcgtgtatta       780
     tgagctgctt aaaccgaacg aaacaatcac cgccgagcgt tatcaacaac aattggaacg       840
     tttgaatgat aatttgatgc aaaaacgacc atcaattgca tcaaatcgtc gaaaggtgat       900
     tttactccat gataacgctc ggccgcatgt tgctatagcc gtgaaacaaa cactgataga       960
     tctcgaatgg gaggttctcc cgcacccagc gtattctccg gacttagcac caagcgatta      1020
     tcatctgttc cgatcgatgc aacatgctct ggaagataca cacttccata attatagcga      1080
     agtcgaaaat tgggttgctg aatggattga ctcaaaagac agaccattct ttcgtcgtgg      1140
     aattcaactt ctgcctgaaa agtggcaaaa agtcatagct tccgagggaa aatactttga      1200
     ttgaggtatt catatatttt gttattgaaa taagtgctca aatataaaga aaaaacagcg      1260
     gcttttaatg caaaccccta ata                                              1283
//
ID   Mariner-8_BM repbase;    DNA;    INV; 1654 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   28-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1654
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 943-943 (2010).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..1374
FT                 /product="Mariner-8_BM_1p"
FT                 /translation="METTPTEAAQIVALLQEGLSQRVVARRLHISQSCVSK
FT                 ACKRFRETGSFIPRPRSGRRRCTSERDDRFIVSTSLRNRHLPGVDVQQELR
FT                 DVRGVAASEWTVRRRLKQANLTPKRPVTGPKLTVAHRQARLQFARTHLDWE
FT                 VEQWRQVLFSDESRMCLHGSDRRGRVYRRPGERFAQCCFAETVAYGGGSCM
FT                 MWAGISFDGKTELVFVPGGGRGGGLTSDRYISDILLEHVVPYAGYTGDDFL
FT                 LMHDNARCHTARVTTEYLEEVGIATLDWPALSPDLNPIEHVWDEPKRKVRS
FT                 RTPAPSCLNELKSALIEEWEGIPQESIQKLIRSMKNRLRAVIRARGGNTKY
FT                 "
XX
SQ   Sequence 1654 BP; 426 A; 373 C; 395 G; 459 T; 1 other;
     cactcgcgag caaaagtttg gaatcactta cttgaaattg gttccgcgcg atctcgtgta        60
     ctaaatattt ttttgataat cataaaaatg acatcgtttt aaaggttcaa ctcttaactt       120
     taaactgata ccaaattcat taaaatcaag ccagtattta agaagctatc ccggattaag       180
     tgaaggaata acgaaaaaga cgtgtttcaa ttgcttgata cgtcgcgagt tgcgacctat       240
     tgacccctat aaaagcacct gttatcggat tttctttatc agtcgacttt cacacgttga       300
     ccggtacaca tctccgctac ttttgaccct ttaccttgta cgacaatgga gacaacacct       360
     acagaagcag cacaaatcgt agccctattg caagaagggc tcagccagcg ggttgtcgct       420
     cgtcggctcc acataagcca gtcctgtgtt tcgaaagctt gcaagcgctt tcgggagact       480
     ggtagcttta tcccgagacc aagatctgga cggcgccggt gcacatcgga gagggatgac       540
     cgttttatcg tgtcaacctc tctccgaaat cggcatttac ctggtgtcga cgtccaacag       600
     gagctccgag atgttcgtgg ggtagcagcc agcgagtgga cagttcgtcg acgactcaag       660
     caagcgaatc tgactccaaa aaggcctgtc acaggcccga aactcacggt agctcaccga       720
     caagcacgcc ttcaatttgc tcgcacccat cttgattggg aggttgagca atggaggcaa       780
     gtcctgttct ccgacgagag caggatgtgt ttgcacggta gcgaccgaag aggtcgggtc       840
     tacaggcggc ctggggagcg atttgcgcag tgctgtttcg ctgaaacagt ggcttatggg       900
     ggcggctctt gtatgatgtg ggccggcatt tccttcgacg gtaaaaccga gcttgttttc       960
     gtgcctggcg ggggacgagg aggcggtcta acttcggacc ggtacatttc cgatattctg      1020
     ctggaacatg tcgttcccta tgcgggatat accggtgatg acttcctcct tatgcacgat      1080
     aacgctcgtt gtcacactgc ccgtgtaaca actgaatacc tcgaagaagt cggtatcgcc      1140
     acattggact ggcctgcgct cagccctgac ttgaatccta ttgagcacgt gtgggatgaa      1200
     ccgaagagga aggttcgttc cagaactcct gctccttcat gtctgaatga gctgaaatcg      1260
     gcgttgattg aggagtggga aggtatccca caagaatcaa ttcagaagct gatcaggtct      1320
     atgaagaatc gtcttcgagc agttattagg gcgaggggag ggaacacaaa gtactgacac      1380
     ttaattttaa ggctaaataa aanttttatt tattaatttt tgttgtttta ttcattcatt      1440
     atttttccat atttccttgt tttcctacct ccttcactta atccgggata gctccttaac      1500
     tactggctcg atttgaatga atttggtatc aatttaaagt tgacagttga acctttaaaa      1560
     tgatgtcatt tttatgataa ttaaaaattt atttagtaag caagatcgcg cggaaccaat      1620
     ttcaagtaag tgattccaaa cttttgctcg cgtg                                  1654
//
ID   Mariner-8_CFl repbase;    DNA;    INV; 2359 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-7_CFl;
KW   Mariner-8_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2359
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 812-812 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus. Often compounded
CC   with Mariner-7_CFl as a single TE.
XX
FH   Key           Location/Qualifiers
FT   CDS           894..1748
FT                 /product="Mariner-8_CFl_1p"
FT                 /translation="MFCRHLLKIPILVFRESLKLTILLPCLEHMVWRILKK
FT                 NKFHPYKLQYVQELQNGDEERRIHFCERMMALIDVRPIFPYQIVFTDEATF
FT                 TLTGEVNNQNFRFWSDENPNWVRETHTQHPQKINVWCGIIDGYLIGPFFFE
FT                 EYLNAQRYERLLVDQIIPAIQNTFPNNFQEIWFQHDGAPAHFGAGPRRILN
FT                 ETFPLRWIGRRNGNEGGEDWPPRSPDLTPLDYYLWGYLKSKVYRTKPKTIH
FT                 ELIQRIRDEMALIPFETNRKVISTFYQRLAYCQEVNGSHFQHLL"
XX
SQ   Sequence 2359 BP; 755 A; 452 C; 453 G; 699 T; 0 other;
     cagggtctac caaaagtgtg gaaaccccta aatatctcgg aaaatatacg ttttacagaa        60
     aagtgtttcc aacaaaagtt gtagggttta agaagatcta tatactgatt ctatcagttt       120
     gaccttggat ggcgtcgtca aggtcaggtc aaggtcacat tgactttttt aaatgacacc       180
     ccctacattt gattgcatat tcttatagct taattcaaga gctttccaaa acactataat       240
     aatgttcatt tttattaagt actttgcgag ttatgagggt tgaatgatag agtagcgccg       300
     gtattaacat tatccaaggt gtactacatg gaggttactc gctcggattt gcatctgttg       360
     tgtgtgtgat ccagctaact aaggcaagat cgattcctca acatatcctc atatttcgct       420
     gaagtcaaat tgccaaaaaa ttgctccata aaacgtgtat gaaacgtctc gttagttcct       480
     tcatttaccg ctatgtgacg cactacatgc agtctaactc gcatttaaaa ttcaactaag       540
     aatgtataaa gctatcaaag aacgagcacc ttctaacttc agctttgagc aagcagaaat       600
     taattgttat cgtccaaata caacgtacga ttaattaaaa ttaaacgttt taaaaatggc       660
     tggcgacttg tcggaacgtg aaagaatcac tatcctcatg atgcgtggat ggggtgataa       720
     cgaaagatcg ttctctgatg tcgttcgatt atttaatgac acgtatccga accgtcgaat       780
     taataagtcc actgtgttaa aaacaataga acgttttaga caaactggta gcgtaagaaa       840
     tcgctctaag tcaggaagac cattgtctgc aaccaacgaa gaaaaacaac ttgatgttct       900
     gcagacattt attgaagatc ccaattctag tgttcagaga gtcgctcaaa ctcacgatat       960
     tgctcccatg tctggagcac atggtttgga gaattttaaa gaagaacaag ttccatccat      1020
     ataaattgca atacgttcaa gaattgcaaa acggagatga ggagcgtcgt atacatttct      1080
     gtgaaagaat gatggcacta atagatgtcc ggcccatctt cccttatcaa attgttttca      1140
     cagacgaggc aacttttacc ttaacgggag aagttaataa tcaaaatttt cgtttctggt      1200
     cagatgagaa tccgaattgg gtgcgggaaa ctcacacaca acatccacaa aaaataaatg      1260
     tatggtgcgg aataatagat ggctatttaa tagggccgtt tttttttgaa gaatatttga      1320
     acgctcaaag gtatgagaga ttacttgttg atcaaataat tccagccata cagaatactt      1380
     ttccaaataa tttccaagaa atatggtttc agcatgatgg agctcctgct cattttggtg      1440
     caggaccacg tcgtatttta aatgagactt ttccgctacg gtggatagga agaaggaacg      1500
     gaaatgaggg aggagaggat tggccacctc ggtcaccaga tctaactcct cttgattatt      1560
     atctatgggg atatctgaag agtaaggttt acagaacaaa acctaaaacc attcacgaat      1620
     tgatacagcg aataagggat gaaatggctt tgataccttt tgaaacgaat cgtaaagtca      1680
     tttctacatt ctaccaaaga ttagcatatt gtcaggaagt aaatggcagc cactttcagc      1740
     atttacttta acacattgaa acacatttgc aatcgtttgg tgcaacctaa cctgatctct      1800
     gtatacacgc accgcacgca cgcacacgca cacatttcga acaattatta tgataaatga      1860
     gcatccacaa atttatttac tgtttactat gtcgattgct ttccaggtct ttaaatgctc      1920
     gattgtaatt tggttgggtc tttgcttttg ctgactggat ccacgaccga tcttgcctta      1980
     gttagctgga tcacacacac aacagatgca aatccgagcg agtaacctcc atgtagtaca      2040
     ccttggataa tgttaatacc ggcgctactc tatcattcaa ccctcataac tcgcaaagta      2100
     cttaataaaa atgaacatta ttatagtgtt ttggaaagct gttgaattaa gctataagaa      2160
     tatgcaatca aatgtagggg gtgtcattta aaaaagtcaa tgtgaccttg acctgacctt      2220
     gacgacgcca tccaaggtca aactgataga atcagtatat agatcttctt aaaccctaca      2280
     acttttgttg gaaacacttt tctgtaaaac gtatattttc cgagatattt aggggtttcc      2340
     acacttttgg tagaccctg                                                   2359
//
ID   Mariner-8_DAn repbase;    DNA;    INV; 1662 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1662
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 264-264 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~40-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..1336
FT                 /product="Mariner-8_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MGRGKHCTPERRELIKNLISSGKTYKEVQKIIGCGAS
FT                 MIRNAIKFSPKTETRGRPQVLADKLATRVARYSKKHPFASCKEIKDELNLD
FT                 ASIPTISRLLKKQNLKAHSPRKIPFHTKKHIAARMKFAKSHVNWSVEKWRN
FT                 ILWSDESKIVLYGGKGSRQYVRRPPNTEFNAKYCIKTIKHGGHNIMIWACF
FT                 SYYGVGPIYWIKNIMDGPGYVQIMQETMLPYASEEMPLLWVFQQDNDPKHT
FT                 SKVAKKWFAENKIAVLEWPAQSPDLNPIENLWTDVKKAVAQRHPTNVSELW
FT                 EIVKASWTSISPERCQKLVDSMPRRCAAVIANKGGATKY"
XX
SQ   Sequence 1662 BP; 540 A; 296 C; 317 G; 509 T; 0 other;
     cagctgtttt caaaataata ggagtgcttt tgcatatgca cttgtccctt ctgtagcaat        60
     gttaggcgtt catttttttc aattttattt ctttttccaa atttgtttat gggtacacat       120
     tctaaggtac cgttattttt tcgttttact atcttcgttt tctgagaatt acgcaaattc       180
     gtaaacaaac ttcattttgc gttcatcaaa ataataggag tgtggcattt taatctgctc       240
     agagcgaaaa aataggtaat tattcttaaa aaaacggttt aaaagtatag aaagattaat       300
     ttccaactac aaatttaacg tttaagatcg aaaacttaaa gcaatgggtc gtggcaaaca       360
     ctgcacacct gagcggcgtg agttgatcaa aaacttgatt tcaagtggga aaacgtacaa       420
     ggaagtgcaa aaaataattg gatgcggtgc ttccatgatc cgaaatgcaa taaaattttc       480
     acccaagacg gaaacccgcg gccgacccca agttctagcc gataaactgg ctacacgtgt       540
     cgcaaggtac tccaaaaagc atccttttgc aagctgcaaa gaaattaagg atgagcttaa       600
     cttggacgca agtatcccaa caataagtcg tcttttaaag aagcaaaatt tgaaagccca       660
     cagtccacgg aaaattccat tccacaccaa gaagcacata gccgcaagaa tgaaatttgc       720
     aaagagccat gtcaactggt cagttgaaaa atggcgtaac atcttgtggt cggatgagtc       780
     gaaaatagtc ctttatggtg ggaaaggatc tcgacaatac gttagaagac cacctaacac       840
     cgaatttaat gccaaatatt gcattaaaac gattaaacat ggcggacata atataatgat       900
     atgggcatgt ttctcgtatt atggcgtagg tcccatatat tggattaaaa atattatgga       960
     tggtcctgga tatgtccaaa taatgcagga aacaatgctg ccttatgcta gcgaagaaat      1020
     gccactgctt tgggtcttcc agcaagacaa tgacccaaag cacacaagta aagtggctaa      1080
     gaagtggttt gcagaaaata agattgcagt actagaatgg cccgcccagt ctcccgatct      1140
     gaatccgatc gaaaatttgt ggacagacgt taaaaaggcg gtcgcacaaa ggcacccaac      1200
     taatgtttcc gagctttggg aaattgtaaa ggcctcttgg acctcgatta gtcccgaaag      1260
     atgccagaaa ttggtggatt ccatgccaag gcgctgtgcg gcagtgatag ccaataaagg      1320
     tggtgccacg aagtactaat tatagttttt ttttattgca tttaacatta aattacttca      1380
     tataaccata gtttgtcgtt atatattatt ttcataagtt ttgagcgagt ttgcttgaac      1440
     actcctatta ttttgagaaa cccatattgg gtgttattcc ctttttattt tttttactaa      1500
     gtatgtattc aatgaagtaa gtttttttta gttttaagtt ttttaataca agtcatattt      1560
     gttaaaaaaa ataaatttaa aaaatttaaa tcgtattgac atagtttttt tcaccgtttt      1620
     tcacatttgt aatgggcact cctattattt tgaaaacaac tg                         1662
//
ID   Mariner-8_DBp repbase;    DNA;    INV; 1229 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1229
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 591-591 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1229 BP; 420 A; 221 C; 238 G; 350 T; 0 other;
     ataaagtgta cgaaataagt aagtaggaca cttatgttga taactgtttc gtccacaaaa        60
     acccactact ggaatttttt tcttctacga attgttgatt gaacgatttg tgagagatac       120
     gcagagagaa ctttaaaaag taccgtacga ttttcctgtt aggtctatat tgaccaggcg       180
     agctttgatt ttgcgaacga aataagtaag tgggacagat cagtttatgt tcggatgtat       240
     tctattgcca attagaaaca accaaattta gtgagtttcg tcaaataaat aataataata       300
     ttcagccgag gcagcaagaa gtattggcgc tccgagatat ggggatgtca atacgcaaaa       360
     ttgctgcaga atgtgggagg agtaagcgga cggtggaaaa ccttttaaaa gaccccgaaa       420
     accatgggaa aaaaccccgt tctgggcgcc caccccttgt tgacgagcgg gacaagcgac       480
     gtattaaatt tctagcagtc aatgaaaacg tcagtgcatc ccaaatacga tctaatttgt       540
     cactgccaat atccactcga cgagtccaaa aaattttgag agaatcggac aatgtttcat       600
     acgaaaaaaa actctcaaac ctgaactact actcaggcac aaagtagccc gattgcagtt       660
     tccaatataa agatatagag tggaaaaatg taatatttag cgatgggaga agtttaattt       720
     agatggccct gatggctacc gctattatta tcgcgacatt agaagtccta aaaaagtcca       780
     cgtctccagg aactttcacg ccggaactat ttcggtgaag aatggacttt tcaacaggat       840
     aatgcaccta tccactgtgc aaagcttaca aagagcttcc tttcgtcatc gcaaatccca       900
     attttggaat ggccagctcg cagcccggat ttaaatccaa ttgaaaatct ttggggcata       960
     ttatctcaaa gggtttatgc taatggaaaa caatttacta gtctcaaaga attaaaagaa      1020
     gcaattaaac gagaatggga gaaaattgac attgaaatcc tgaaaaactt aattaattca      1080
     atgccaggac gagttcttaa agtattggac aataaaggat gcactattta aaataattat      1140
     atactttttc atactaattt tttctaaaat taccgttaag cttaatttat tgaatttgtc      1200
     ctacttactt atttcgtttg aaagttttt                                        1229
//
ID   Mariner-8_DEl repbase;    DNA;    INV; 932 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-932
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 421-421 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 34-bp TIRs. This family is
CC   frequently associated with (TTTTAGTATA)n microsatellites.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           200..850
FT                 /product="Mariner-8_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MEQRAVIKFCFKLGKTFTETHKLMKQVYGDDCLSRTS
FT                 TYEWFNRFKNGRESLEDDERSGRPKSAVIDENIQIVRDFVKKEPKSSLRYM
FT                 EMELEISYKSIHRILIEHLGMRKVCARFVPHTLKEHAHRATLVTDFLTKNH
FT                 ILTVNHSPYSPDLAPCDFFLFGKLKLAMKGRYFDDIKSIEKATTDILKAIP
FT                 VDELKHSFESLLNRANRCIESEGDYFE"
XX
SQ   Sequence 932 BP; 277 A; 167 C; 191 G; 295 T; 2 other;
     tacaaggtgt gtgtcaaaag tttccgaact tttctggcag ggcattttct ggtgccgcca        60
     tctttgtgtg agtatatgcg tttgaaagat acattattca ccgattttcc ctccaaattt       120
     caagacattt ggaacagtgg aattggaatt attgcgtttt aagtgacagt accttgtgtt       180
     agttggtcga cgaaaaatca tggagcaaag agcggttatt aagttttgtt ttaaactcgg       240
     taaaactttc accgagactc ataaattgat gaaacaagtt tatggtgatg attgtctatc       300
     ccgtacctca acttacgagt ggtttaatcg ttttaaaaat ggtcgtgaaa gcctggaaga       360
     cgacgaacgt tcgggccgtc cgaaaagtgc tgttattgat gaaaacattc aaattgttcg       420
     tgattttgtc aaaaaagaac caaaatcttc gttgagatac atggaaatgg agttggagat       480
     atcctataag tctattcatc gcattttgat tgagcatttg ggtatgcgga aggtwtgtgc       540
     acggtttgtt ccacacacac tcaaagagca cgctcatcga gcaacgcttg tgaccgattt       600
     tttaacaaaa aatcacattc ttaccgtcaa ccactcacca tattcacctg atttagctcc       660
     gtgtgacttt ttcctattcg gaaaattaaa attggcaatg aaaggaagat attttgatga       720
     cataaagtcc attgaaaagg cgacgaccga catactcaag gccatcccgg ttgacgagct       780
     aaaacactca ttcgaatcac ttttaaatcg tgcaaatcgt tgtattgagt cggagggaga       840
     ctattttgaa taaatgcaag gtttcattcc aaactatttt gtagtttttt ttctttttga       900
     aaagttcgga aacttttgac acacascttg ta                                     932
//
ID   Mariner-8_DF repbase;    DNA;    INV; 1647 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1647
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 775-775 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. ~225-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           354..1376
FT                 /product="Mariner-8_DF_1p"
FT                 /note="transposase."
FT                 /translation="MTRKELTVEERKIILNLHIKERKSYSEISEIMCRSRS
FT                 TIQHVIGRFKNEGRVENNQRTGRPPKLNDRDKRTIKHLIDKEPFQSAVKIS
FT                 DVINTTLHKDVHPETIRRTIKEFGFGSYTPRKKPHVSKQNRLKRLEFAKTY
FT                 KNHSVEFWRKVIFADESKYNIFGSDGRFKVWRRPGDAYKPKYTIKTVKHGG
FT                 GGVMVWGCVGFAGVGGLEFIDGIMDHKKYIDILKRNLNQSADRLGIGSSYY
FT                 FYQDNDPKHTALNTRLWLLYNVPHVLNPPPQSPDLNPIEHVWNQLEKNIRG
FT                 REIRNKSDLKAALKEEWDKMDLSYLESLVSSMPRRLNEVIKMKGYPTKY"
XX
SQ   Sequence 1647 BP; 571 A; 299 C; 315 G; 462 T; 0 other;
     cagtgtgcca ctaaagtcat gatacagcag acgatttcta cgaaacttgc aaaatatacc        60
     tttattaaac gaaaaatgaa aaaactaagg atgacatgtt gtgtgattca cttgccttaa       120
     caatattaca aaataaaata acaacttttc cttatagttt acttaaaaat aagaaaaaac       180
     ttaaaaaaat cttaaattta gttccacaaa agtcatgata cacttaagaa attacacact       240
     tctatctttt ctgttttgac aattgtaacg ggacttttac catatgcttt tgtgtgcctt       300
     cctttgcatt tgtgcagttc tgggaaaagc aaagttaaga aggagccaga aaaatgacgc       360
     gtaaagagct cacggtagag gaacggaaaa ttatattaaa tttacacata aaagaacgga       420
     aatcgtattc cgaaatatct gaaattatgt gtagaagccg gtccactatt caacacgtga       480
     tcggacgttt taagaacgag ggccgggttg aaaataacca aagaactggc cgcccgccaa       540
     aacttaacga tagagacaaa cgcacaatta aacatttaat tgataaagag ccctttcaaa       600
     gtgccgttaa aataagtgat gtgataaaca caactctaca taaggatgtc cacccagaaa       660
     ctatccgcag gacaataaaa gagttcgggt ttggctcata tacaccacgt aagaagccac       720
     acgtgtcaaa acaaaatcgg cttaaaaggc ttgagtttgc aaaaacatat aaaaatcatt       780
     cggttgagtt ctggcgcaaa gttatctttg cagacgagtc caaatacaac atatttgggt       840
     cagatgggcg tttcaaggtt tggcggcgac ctggagatgc ctataaaccc aaatacacca       900
     taaagaccgt aaagcacggt ggaggaggag tgatggtttg gggttgtgtg ggctttgcag       960
     gcgttggagg tctagaattt attgatggta tcatggacca caaaaaatac atcgatatcc      1020
     ttaagcgaaa tctcaaccaa agtgcagatc gtcttggaat tgggtcatct tattactttt      1080
     accaagataa tgacccgaaa cacacggcct taaacactcg cctctggttg ctctacaatg      1140
     ttcctcacgt ccttaatcct ccaccgcaga gtcccgacct caaccccatt gagcacgtat      1200
     ggaatcagct ggaaaaaaac ataaggggcc gcgaaattcg caacaaatcc gatctgaaag      1260
     cagcgctaaa ggaggagtgg gacaaaatgg atctatcata tctagagtca ttagtctcat      1320
     ccatgccaag aaggcttaat gaagtcatca aaatgaaggg atatcctaca aaatattaga      1380
     tttaatttta agccgttaaa tatagtttaa gtgaccttaa tgaaaagtgt atcatgactt      1440
     ttgtggaact aaatttaaga ttttttaagt ttttcttatt tttaagtaaa ctataaggaa      1500
     aagttgttat tttattttgt aatattgtta aggcaagtga atcacacaac atgtcatcct      1560
     tagttttttc atttttcgtt taataaaggt atattttgca agtttcgtag aaatcgtctg      1620
     ctgtatcatg actttagtgg cacactg                                          1647
//
ID   Mariner-8_DK repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1646
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1201-1201 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 644-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           706..1347
FT                 /product="Mariner-8_DK_1p"
FT                 /note="transposase."
FT                 /translation="MRQKFALDHKTWCGPQGEKKWRNILWSDETKINLFGN
FT                 DAKRNVRRPKGKKFDARYTCKTVKHGGGSLMVWGCFSWDGVGPIHRIDGIM
FT                 DRFVYKNLLETVMLPYAEDNMPLLWKFQQDNDPKHSSRVVKDWFREQKVDV
FT                 LEWPSQSPDLNPIENLWGELKREVGRTFCQNIGQLKDIVQKTWYNILVETC
FT                 RKLILSMPRRMEKVLQNNGGYTNY"
XX
SQ   Sequence 1646 BP; 539 A; 272 C; 306 G; 526 T; 3 other;
     cacatatgga caaaataata ggtgtgagtt ttttttcttt gttaacgttt aatttctaat        60
     ttatttcttt ataaatctta acaaatcaag tttttttcat aactcataat atttgtctac       120
     atttacaaac taaaaacagc tatacaaact ctctaataaa aaagaaaaac cattttatag       180
     ttaaattcac aaattttgcc tggacaaaat aataggtgta ggatgattaa ttttcaaatt       240
     atatcgattt ttcaatcaat ttggtcctgt ttcagtttta aatcactaat tggcagtcaa       300
     taattggtat atccgccatt attttktaga attttctcca ttcgtcttgg catggacaat       360
     attaacttgc gacaagtttc aactaggatg ttgtaccaag ttttttggac aatatcctta       420
     agttgascga tattttggca aaaagtcctt ccaacttctc ttttaagttc accccagaga       480
     ttctcaatgg gattgagatc cggggattga cttggccact caagaacatc caccttttgc       540
     tcccggaacc aatcctttac aactcgcgat gagtgtttcg ggtcattatc ctgttggaac       600
     ttccataaaa gtggcatatt atcctcggca tatggtagca ttacatcaaa cctaccaggt       660
     aggattgccc gaagggttcc tttgctccgg acggcaaatt tacagatgag gcaaaagttt       720
     gcattagatc ataagacctg gtgcggcccg cagggtgaga aaaaatggcg taatatcctt       780
     tggagtgacg aaaccaaaat taatttgttt ggtaatgacg ctaaaaggaa tgttcgtcgt       840
     cctaaaggca aaaaatttga cgccaggtac acatgtaaaa ccgtgaaaca tggaggtggt       900
     agcttaatgg tatggggctg cttttcttgg gatggtgttg gtccgattca tcgaatcgac       960
     ggaatcatgg atagattcgt ttataaaaac ttattggaga cagtaatgct accatatgcc      1020
     gaggataata tgccactttt atggaagttc caacaggata atgacccgaa acactcatcg      1080
     cgagttgtaa aggattggtt ccgggagcaa aaggtggatg ttcttgagtg gccaagtcaa      1140
     tccccggatc tcaatcccat tgagaatctc tggggtgaac ttaaaagaga agttggaagg      1200
     actttttgcc aaaatatcgg tcaacttaag gatattgtcc aaaaaacttg gtacaacatc      1260
     ctagttgaaa cttgtcgcaa gttaatattg tccatgccaa gacgaatgga gaaagttcta      1320
     caaaataatg gcggatatac caattattga ctgccaatta gtgatttaaa actgaaacag      1380
     gaccaaattg attgaaaaat cgatataatt tgaaaattaa tcgtcctaca cctattattt      1440
     tgtccaggca aaatttgtga atttaactat aaaatggttt ttctttttta ttagagagtt      1500
     tgtaaagctg tttttagttt ttaaatgtag acaaatatta tgagttatga aaaaaacttg      1560
     atttgttaag atttataaag maataaatta gaaattaaac gttaacaaag aaaaaaaact      1620
     cacacctatt attttgtcca tatgtg                                           1646
//
ID   Mariner-8_DRh repbase;    DNA;    INV; 1612 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1612
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1402-1402 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSDs. ~500-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1612 BP; 545 A; 284 C; 290 G; 488 T; 5 other;
     cagtcatgga aaaaataata gaaacgacaa ttttttttcg tatttttcaa acttttcttc        60
     agtcaatttt ttttttttta agtttaataa ttttgattka tagtcgattc aattatgtgt       120
     caaaatatac caaaacaata attttcaaaa aacgttatga actaaaaaat aattttttaa       180
     atttttaggc ctggaaaaaa taatagaaac gactgagtta attctatgaa aaacagtttt       240
     gtagcttcaa agcctattag tttagatggt aactttaata tatagttgtg ccaccgctat       300
     ttttaatgac tttggttcag cggtgtccca ttgaatccac caaattggca caaattgatg       360
     gttcaatgga gtaccactca gaattcactt tcttccacaa atcttcccta gttttggact       420
     taaacccacc aagcctcttc tttattatcc cccaaaggtg ctctatagga tttaagtctg       480
     gggactgcga ttacggcgat tcatcacaat aataagcgcg caacatcggt gaatttcgac       540
     aggcggcttg ttagaaaatc aaataaaaat acctttctct cgtcgaaaca tmtcaaaaat       600
     gatttgaatg caccggttac aagtcgaacc ataagaaata ggctgattga agccgatcta       660
     aaagcccatt cacaccgaaa ggtaccatac ctcagcaaga aaaatatcga caaacgtgta       720
     catttcgcga aggtgcattt attgcgctcc aattggaaaa atatgttgtg gtcggacgaa       780
     accaagatga atttgtttgg atctgatggg gaaccacatg tawggcgccc taagaatacc       840
     gcccacgacc caaagtactc tattaaagcc gttaaacatg gaggtgcgaa actcatgttg       900
     tggggatgct tttcccagtc gggttttggt ccaatacatt ggataaagga aaaaatgtgt       960
     gccacccact acgtagacat actcgacagc ataatgctac cttatgctga agaggaaatg      1020
     ccaattgaat ggaagtttca gcaggataat gacccgaacc attcttcaaa gctggccaag      1080
     aaatggtttg tggacaacga agttcccttg atggaatagc cttcgcagtc cccagactta      1140
     aatcctatag agcacctttg ggggataata aagaagaggm ttggtgggtt taagtccaaa      1200
     actagggaag atttgtggaa gaaagtgaat tccgagtggt actccattga accatcaatt      1260
     tgtgccaatt tggtggattc aatgggacac cggtgaacca aagtcattaa aaatagcggt      1320
     ggcacaacta tatattaaag ttaccatcta aactaatagg ctttgaagct acaaaactgt      1380
     tttccataga attaactcag tcgtttctat tattttttcc aggcctaaaa attttaaaaa      1440
     wtatttttta gttcataacg ttttttgaaa attattgttt tggtatattt tgacacataa      1500
     ttgaatcgac tatcaatcaa aattattaaa cttaaaaaaa aaaaaattga ctgaagaaaa      1560
     gtttgaaaaa tacgaaaaaa aattgtcgtt tctattattt tttccatgac tg              1612
//
ID   Mariner-8_DSuz repbase;    DNA;    INV; 1648 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-8_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1648
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 134-134 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(345..1337,1341..1532)
FT                 /product="Mariner-8_DSuz_1p"
FT                 /translation="MGRAKHCSVETRKTIKKLIFEGNTYAQVGRIIGCSNK
FT                 MICNALKYDTKPETRGRKLAMTPKMVTRLVRESKKDPFKPASELKKDLNIS
FT                 AAITTVRSCLRDNKLYARSPRKVPLLTKKNIAKRIKFANQYVNWSQEKWRN
FT                 ILWSDESKIVLFGGKGSRSYVRRPPNTEYNPRFTCKTIKHGGSSIMVWGCF
FT                 SYYGVGPIHWIRPIMDQNVYVDILETVMLPYAEYKMPLLWVFQQDNDPKHT
FT                 SRKARSWFETNRVNVLEWPAQSPDLNPIENLWSDVKKDVSKAKPKNNMDLW
FT                 ATVQVSWKNIPKERCQGLVDSMPRRCAAVLAAKGFTTKYFLRTLSRIFLDN
FT                 FFFDIVVFLSFSLIFQFWCYFCCRPNFLKISYFCEILSSKVSNAYNCLQFH
FT                 K"
XX
SQ   Sequence 1648 BP; 524 A; 302 C; 333 G; 489 T; 0 other;
     cagttgcggc aacaaaaata gcaccattgc gtgggtagtt cttaattgtg atataaaatg        60
     gccatttctt gcaatatttc cattctgttt ttggtaataa ttagtgaaat acatgtactt       120
     actaaaataa cactgataac tgttacaatg cgaacggttt ttattacatt cgaatttgta       180
     tggagagaga gtcaaaatag agcggcaaca aaaatagcac tattaacagt tcttctacga       240
     aagctttact tgttcgaaac tttatggagt tttttcttct tagatgcatt tgatatcagt       300
     gcatttaatt gatttgctaa agtgagtcgc aaatttcggt agttatgggt cgtgcgaagc       360
     attgttctgt ggaaacacga aaaacaatca aaaagctcat tttcgaaggc aatacctatg       420
     cccaggttgg gcgaatcatc ggttgctcta acaaaatgat ttgtaatgcc ctaaaatatg       480
     ataccaaacc agaaacacgc gggagaaaac ttgcaatgac accaaaaatg gtaacgcgcc       540
     tggtgcgcga aagtaagaag gaccctttta agccggctag cgagcttaaa aaggatctaa       600
     acatatcagc agctattaca actgttagat cctgtttacg tgacaacaaa ttatacgcac       660
     gcagtccaag aaaagtaccg ttattgacta aaaagaacat cgcaaaaaga attaagtttg       720
     caaatcagta cgtaaattgg tcccaagaaa agtggcggaa catattgtgg tctgatgaga       780
     gcaagattgt tttatttggt ggaaaagggt ctcggtctta cgttagacga cctcccaata       840
     cagaatataa cccccgcttc acttgcaaaa caattaaaca tggagggtcc agcatcatgg       900
     tgtggggttg cttttcgtat tacggagtcg gcccaataca ttggataaga cctatcatgg       960
     atcaaaatgt ctacgtcgat atattggaaa cagttatgct accatacgcg gagtacaaaa      1020
     tgcctttgct ttgggtcttc caacaggata atgacccaaa gcatacgagc aggaaagctc      1080
     gatcctggtt tgagaccaac cgtgtcaacg tcttggagtg gccggcacag tcgccagact      1140
     tgaacccgat agaaaatctt tggagtgacg ttaaaaaaga tgtttctaag gcaaagccca      1200
     aaaataatat ggacctctgg gccactgtgc aggtgtcgtg gaaaaatata cccaaggaaa      1260
     gatgtcaggg tctggtggac tccatgccaa gacgatgtgc tgctgtcctt gcagccaaag      1320
     gcttcacaac aaaatattaa tttttaagga cactatcacg catatttctg gataattttt      1380
     tttttgatat tgttgtattt ttaagttttt cactcatttt tcaattttgg tgctattttt      1440
     gttgccgacc aaatttcctt aaaatttcgt atttttgtga aatactttcg agtaaagtat      1500
     caaatgcata caattgcctt caatttcata agtaatatgt tatagtaata aaataagtgg      1560
     ttacccactc gcttaagcca ttattcttaa taaaatttcg atttaaagcc aagcttatgt      1620
     catggtgcta ttatttttgc cgcagctg                                         1648
//
ID   Mariner-8_DTa repbase;    DNA;    INV; 1589 BP.
XX
AC   .
XX
DT   18-SEP-2021 (Rel. 26.11, Created)
DT   18-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1589
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (18-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(355..921,925..1341)
FT                 /product="Mariner-8_DTa_1p"
FT                 /translation="MPGVTHLSDIERGKILALRETGMSIRKIAENVGRNKC
FT                 TVEKLLKDPENHGKKPRTGRPPLVNDRDKRRITFLIVNENISASQIRSQLT
FT                 LPISTRRVQQILKASENVSYEKKLLKPELLPSHKSARLNFANKYKFLDSEW
FT                 KNIIFSDEKKFNLDGPDGYRYYYRDKRSPKKVHLARNFHGGSLMIWAAFGY
FT                 GKSPICFVTHKMNAATYVELLETVLVTFGEDYFGDMWTFQQDNAPIHCAKL
FT                 TKSFFAASGIPLLEWPAKSPDLNPIENLWGILFQRVYANGRQFGTLKELKE
FT                 AIVKEWDKLDDQMLQNLTNSMPGRILKVLNNKGCSI"
XX
SQ   Sequence 1589 BP; 547 A; 264 C; 296 G; 482 T; 0 other;
     aggtgtgcga aataagtaat taggacaaat atatgtctga taacattact tacattattt        60
     aatgaatcac ttttttcttt tcgttaatat ttcgctagca aaaagcgcga actacgagca       120
     aagaactttg aaaaagtacc gcaaggattt cccgttagat ttatttatag tcacaaggtt       180
     cgcttctacg aacgaaataa gtaagtagga cagatcactt ttctttgctt tgcttgaagg       240
     tgacgacgtt aaatgtgatt gaataaattt aaatttactt aatatacacc aaagagtgag       300
     ttaaatcaga aatcagtaca ttggataagg tttaatacat ttttaaaata ggatatgccg       360
     ggagttaccc atttaagcga tatagaacgt ggaaaaatat tggcactgcg agaaaccgga       420
     atgtcaatac gtaaaattgc tgaaaacgtt ggaagaaata agtgtacggt ggaaaaacta       480
     cttaaggatc ctgaaaacca tggaaaaaaa ccacggactg gtcgcccccc tttagttaat       540
     gaccgagaca aaagaagaat tacatttcta attgtcaacg aaaatatcag tgcatcccaa       600
     atcagaagtc agttgactct cccgatatca acgcgacgag ttcaacaaat tttaaaagct       660
     tctgaaaacg tttcatatga aaaaaaactg cttaaacctg agctactgcc aagtcacaaa       720
     tctgcacggt tgaactttgc caataaatac aaatttttgg actcggagtg gaaaaatatt       780
     atttttagtg atgaaaaaaa gttcaattta gatggccctg atggttaccg atattattat       840
     cgcgataagc ggagtccaaa aaaggtccac ttagcaagaa acttccatgg aggctctctt       900
     atgatttggg cagcgtttgg ataatatggg aagtctccaa tatgttttgt aacacacaaa       960
     atgaatgcag caacctatgt agagttattg gaaacagttt tggtaacatt tggagaggac      1020
     tattttggag atatgtggac ttttcaacaa gacaatgccc ctatacactg tgcgaagctc      1080
     acaaagtcct ttttcgccgc gtcgggtata ccacttttgg aatggccagc aaagagtccg      1140
     gacctaaatc ctatagaaaa cctttggggc atacttttcc aacgagttta tgccaatgga      1200
     agacaatttg gaactctgaa agagcttaaa gaagccattg taaaagagtg ggacaaatta      1260
     gacgaccaaa tgctacagaa ccttactaac tccatgccag gacgaatcct aaaggtgttg      1320
     aacaataaag gatgttccat ttaaaataaa tttaacgttc taaatgtaga aattcagttt      1380
     aataagcgtt agcttggact ttttggattt gtcctattta gttatttcgt ttgaaaaaat      1440
     tttctttatt ttttaaaaaa tatttttata agttttattt gagttgtgat atttttattc      1500
     tcttaccaaa atagccattg gtgctgcaat aaaatgttat tatgttttct tacaaacaaa      1560
     gctgtcctac ttacttattt cgtgcacct                                        1589
//
ID   Mariner-8_FoCa repbase;    DNA;    INV; 1658 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-8_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1658
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2476-2476 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. TA TSDs. 164-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..1376
FT                 /product="Mariner-8_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MGKKVKETPFAIRELVIKHHQGDANGKKTQQEIANLL
FT                 KIPRSTVQYIIRKHKLCGLIVNKQGRGRKPIFSKREKSAIIKKVKVNPKLT
FT                 ISKIRDQVANETGKLTCRNTIIKVIKSEGFKSCRARKKPLISKVNQKKRIA
FT                 FAKEHVNKPQSFWNSILWSDESKYNLFGSDGRARVWRKSDEALKLKNLNPT
FT                 VKHGGGSVMVWGCFSYAGTGGHEFLNGTMDQHVYQGILSRNIKQSVAKLGL
FT                 GRRYTFQQDRDPKHTAKTTWEFFKKNKIKVLEWPPQSPDLNPIEHLWDHIE
FT                 RRIRNYYISNKQDLKNAISDAFETVTPEVTKTLVESMGRRCQAVISAQGGP
FT                 TRY"
XX
SQ   Sequence 1658 BP; 579 A; 300 C; 333 G; 446 T; 0 other;
     cactgatgtc aggaattatc catcattgga caagcttatc gtccaaatgt atatttctta        60
     aaaagtacag tagatattca aatacttttt tttgtcacta gtagaccaac caattggtag       120
     tacaatgtca cgtaatcagg tctcaaaaaa atttcaatat ggggtaaaaa taaattatct       180
     cgcgggcatt caaaatcaac gtgttataaa atatccatct tttttgctcc tcagctgaaa       240
     aaaagaataa tttgttttgg taagttcttt ctttaattta tttttgttct tagatcattt       300
     tcttacgatt aacgaagaaa acttgtacaa aataggctat ggggaagaag gtcaaggaga       360
     cgccatttgc aattcgcgaa ctggtaatca agcaccatca gggcgatgcc aatgggaaga       420
     aaacccaaca agaaattgca aatttgctta aaatacctcg ttcaacagtt cagtatataa       480
     ttcggaagca caaattatgt ggactaattg taaacaagca aggaagaggt cgaaagccaa       540
     tattctctaa gagagaaaaa agtgccatta tcaagaaagt gaaggtcaac ccaaaattga       600
     caatttctaa gatcagagat caagttgcaa atgaaactgg aaaactaacc tgtcgtaaca       660
     caatcattaa agtaatcaag tctgaaggat ttaagagttg cagagccagg aagaagccac       720
     tcatttcaaa ggtcaaccag aagaaacgga ttgcgtttgc aaaggagcat gtgaataagc       780
     cccaaagttt ttggaattcg atcttgtggt ctgatgaaag caaatacaac ttatttgggt       840
     cggatggacg tgccagagtt tggagaaaat cagacgaggc tctaaaattg aagaacctca       900
     accccaccgt aaaacacggc ggtggaagcg ttatggtttg gggctgcttt agctacgcag       960
     ggactggagg tcacgaattc ttaaacggga ctatggacca acacgtgtac cagggtatat      1020
     tgtcccgtaa tataaagcaa tctgtagcaa aacttggtct tgggcgccgc tacacgttcc      1080
     aacaagatcg tgatcccaaa cacactgcga agactacatg ggaattcttc aagaaaaaca      1140
     agataaaagt gttggaatgg cccccccaaa gtccggatct gaatccaatt gagcatttgt      1200
     gggaccatat cgaaagacgg atcagaaact attatatttc aaacaaacag gacctaaaaa      1260
     atgcaatttc ggatgcattc gaaactgtga ccccggaagt gacaaagact ctcgtcgaat      1320
     cgatgggtcg ccgctgtcaa gcagtaatat ctgctcaggg tgggccaaca cgttactaaa      1380
     aattactttt accgatcatt tattacaaga ttgttaaaaa tacgaagtta aataaaaatg      1440
     atggataatt tctgacatcc gaattttgaa agctcgcggt agaagacatt atttccccat      1500
     attgaaattt ttttgagacc tgattacgtg acattgtact accaattggt tggtctacta      1560
     gtgacaaaaa aaagtatttg aatatctact gtacttttta agaaatatac atttgaacga      1620
     taagcttgtc caatgatgga taattcctga catcagtg                              1658
//
ID   Mariner-8_HSal repbase;    DNA;    INV; 1514 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-8_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1514
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 848-848 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..1326
FT                 /product="Mariner-8_HSal_1p"
FT                 /translation="MPHVFSNVEYADMVYVYGYCDGSAPAAVEEYHRRFPM
FT                 RRIPDRRVFSNVFNSLRENGTLPSAHITSERRVERNVEEEENVLQMVQRSP
FT                 TTSTRRVSARTGVPRTRVWRILHDQHLYPFHPQRVQNLHEGDGATRLQFCQ
FT                 WLQNHRELIPVILFTDEATFTRNGINNTRNTHRWSQDNPNAIVVQNFQVRF
FT                 SVNVWCGMIDGMLIGPVILQNRMTGQSYLDFLQNTLPQQLEDISLATRRTM
FT                 YFQHDGAPPHNTHLVREHLNAVFPHRWIGRGGTVQWPPRSPDLTPLDFCLW
FT                 GWLKCEVYKTKVNTRDELIARVIAAVDQIRGREDALRRATRHVLTRCDKCI
FT                 EVRGEIFENLL"
XX
SQ   Sequence 1514 BP; 430 A; 332 C; 341 G; 411 T; 0 other;
     cagggtgtcc cgggaggaaa ggtcaatatt tcgtgggggt atagaatgag gtaatataag        60
     gcaaaaatgt tatataaaca tggtgtcgtt tattactggt ttccgagata cagctatgtt       120
     aaattacacg tcggaattta aagttggcgc gtcattggga tttcattctt caccgtaacg       180
     gagcgctgca ggctgtgtat cagttggaaa ggttagcgaa acacacctgg tgatctgtcc       240
     tgctgtttgt gacacactgc aaacatgccg cacgtgtttt ctaatgtaga gtacgcagat       300
     atggtttatg tttatgggta ttgtgatggc agtgctcccg cagccgttga agaatatcat       360
     cgccgttttc cgatgcgccg cattccagac cgaagagtat tctcaaacgt gtttaacagc       420
     ttacgtgaaa atggtacact tcccagtgct cacatcacat ctgaacgtag agttgagaga       480
     aatgttgagg aagaagaaaa tgtacttcaa atggtacaaa ggagccctac gactagtaca       540
     agaagggtct ctgcacgtac tggtgttcct cggacacgtg tctggcggat actgcatgac       600
     caacatctgt acccatttca tccgcaacga gtacaaaatc tccatgaagg agatggagcc       660
     acacgtctac agttttgcca gtggctacag aatcatcgtg aattgattcc cgtcatactt       720
     ttcactgacg aggcaacatt tacgcgtaat ggcataaata atacgcgtaa cacccatcgt       780
     tggtcgcaag ataaccctaa cgccattgtt gtacagaatt tccaagttcg tttctccgtc       840
     aacgtatggt gtggcatgat tgatggaatg ctgattggtc ccgttatttt acaaaatcgt       900
     atgacagggc agagttacct cgacttttta caaaatacgc ttccgcaaca actagaagat       960
     atttccctgg ctacacgaag aacaatgtat tttcagcacg acggagcacc tcctcataac      1020
     acacatcttg tgagagaaca cttaaatgca gtgtttccac atcgctggat cggtcgcggt      1080
     ggaacagtgc agtggccacc aagatcaccc gacctaactc ccctggattt ctgcttgtgg      1140
     ggttggttaa agtgcgaggt gtataaaact aaagtgaata cacgggatga acttattgca      1200
     cgtgtaatag ccgctgttga ccaaattagg ggccgtgaag atgccctccg gcgcgcaacc      1260
     cgccacgttc tcacaagatg tgacaaatgt atcgaagtac ggggcgaaat attcgaaaat      1320
     ttgttatgat agatgtatta caatgtaatt gcagtaaact tcaactcata ttagacaatt      1380
     ccgacgtgta atttaacata gctgtatctc ggaaaccagt aataaacgac accatgttta      1440
     tataacattt ttgccttata ttacctcatt ctataccccc acgaaatatt gacctttcct      1500
     cccgggacac cctg                                                        1514
//
ID   Mariner-8_LHu repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 366-366 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 97% identical to the consensus. 33bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1201
FT                 /product="Mariner-8_LHu_1p"
FT                 /translation="MANEKQFIRHCIRYEFHQGKSAAKACASICLTLGDNV
FT                 VSKSTCKFWFRRFKEGDFDVSDRERSGAPLKTEDDELQALLDENSSQTQKE
FT                 LALQLGVKQQTVSNRLQKMGKIQKEGKWVPHELSQKNKDNRVEMCLNLYNK
FT                 QHRKSFLWKIVTGDEKWIYYDNPKRKKSWVDPGQPSTSTPKRNIHDQKVML
FT                 CIWWDMQGVLYYELLQPRETVDGDRYSRQLLRLNEEIRRKRPYTGKGLRPV
FT                 KLLHDNARPHVAKTVKETLLTLGWDVLPHPAYSPDIAPSDYHLFRSMQNAL
FT                 SEVRFRNIEEVRKWVDDFIKSKDETFFTAGIRKLPERWRKVIDNNGEYFDT
FT                 "
XX
SQ   Sequence 1277 BP; 431 A; 242 C; 275 G; 329 T; 0 other;
     ttaggggtac aaataagttt taaaccgttt tttgtagaac ataaaaaagt aattcaaaat        60
     ttaaatattc tcccgctctt ttccgatttt gtagtgttta tatggtaaca taaaaaataa       120
     caaccaactt cacgatattg tttgtgtaac ctaaaattgc agcagcttga aaatggcaaa       180
     cgagaaacaa tttattcggc actgcattcg ctatgaattc catcaaggaa agagcgccgc       240
     aaaagcgtgt gcatcaattt gtttgactct tggagacaat gttgtatcca aaagtacgtg       300
     taaattttgg ttcagacggt ttaaagaagg tgatttcgac gttagcgatc gtgaacgtag       360
     cggagcccct ctcaagactg aggacgatga attgcaagca ttactcgatg aaaattcgtc       420
     ccaaacgcaa aaagagcttg cattacaact gggagtaaag caacaaaccg tttccaaccg       480
     tttacagaag atgggaaaga ttcagaaaga gggaaagtgg gtaccacacg aattgagcca       540
     gaagaacaaa gataaccgtg tcgaaatgtg tctgaatctg tacaacaaac agcacagaaa       600
     gtctttcctg tggaaaatcg taacgggtga tgaaaagtgg atatattacg ataatcccaa       660
     gcgaaaaaaa tcatgggtag accccggcca accatccaca tcaacgccaa agcggaatat       720
     ccacgaccaa aaggtaatgc tctgtatatg gtgggatatg cagggtgtgc tatattatga       780
     gcttctgcaa ccacgtgaaa cggttgatgg tgatcgctat agtcgacaac tattgagatt       840
     gaacgaagaa atccgtcgaa aacgtccata tactggcaaa ggattgcgtc cggtgaaatt       900
     gcttcatgac aacgctaggc ctcatgtcgc taaaacggtc aaagaaacat tattgacgct       960
     tggttgggat gttctaccgc acccggccta ttcgccagat atagcgccaa gtgattatca      1020
     cttgttccgg tcgatgcaaa acgcattgtc tgaggtacgc ttccggaata ttgaagaagt      1080
     gcgaaaatgg gtcgacgact ttattaaatc aaaagacgaa actttcttca ctgccggaat      1140
     tcgtaagctg cccgaaagat ggcgcaaggt catagataat aacggagaat attttgatac      1200
     ttaaatgtat tattgaattt ctgcaaaaaa atcttgaatt ttcaaaaaaa cggtttaaaa      1260
     cttatttgta cccctaa                                                     1277
//
ID   Mariner-8_LMi repbase;    DNA;    INV; 1307 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1307
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3011-3011 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..1227
FT                 /product="Mariner-8_LMi_1p"
FT                 /translation="MHTYRRSISIKMAAPLATCTREEQRSVIRFLRSEGVK
FT                 PIEIHRRMKVQYGDACLSQQQVYEWSRKFANGVTSVEDAPRPGQAQRVVTP
FT                 QNIAAVEAIVKENRRVTLNDIAACLQISHGSAHHIVHDVLQFHKVSARWVP
FT                 RQLTPEMRERRVDACEELLRRFEREGDGFLARIVTGDETWVHFHQPETKRA
FT                 SKEWRHSSSPKPKKFRTEPSAGKVMLTLFWDEKGVILEHYMPRGTTVTSAS
FT                 YTDLLKNHLRPAIKSKRRGLLSAGVLLQHDNARPHTARTTVATITDLHFEC
FT                 LPHPPYSPDLAPSDFHMFGPLKEAMGGKKFRSDEEVRHAVHEWLRGLPKEF
FT                 FSKGIYALCKRWRTCIERGGDYVEK"
XX
SQ   Sequence 1307 BP; 383 A; 284 C; 321 G; 319 T; 0 other;
     cgagggtgag tcaaatgaaa acttaaattt gtaataacaa atcgaaattt cgcgtttcct        60
     gtaagttggt aagcgtgcta caaacagcgt gcagaatggc ctgtaggtgg cagcatagtg       120
     cagatgcaca cataccgtcg cagtatcagt ataaagatgg ccgccccact tgcgacttgc       180
     accagggaag aacagcgttc tgttattcgg tttttgcgta gtgaaggtgt gaaacctatt       240
     gaaattcatc gacgaatgaa ggttcagtac ggtgatgcat gtttgtcaca gcagcaagtc       300
     tacgaatgga gtaggaagtt cgcaaatggt gtgacttcag tggaagatgc tcctcgtcca       360
     ggtcaggcac aacgagttgt gactccacag aacattgcag cagttgaagc catagtgaag       420
     gaaaaccgcc gagtgacact gaatgacatt gcagcatgtt tacagattag tcatgggtca       480
     gcacaccaca ttgtgcatga tgtgctccag tttcacaaag tgtctgcaag atgggtgcca       540
     cggcagctga ctcctgaaat gagagaacga cgtgttgatg cttgtgaaga acttcttcgg       600
     cgctttgaac gagaaggtga tggcttcctt gcaagaatcg ttactgggga cgaaacctgg       660
     gttcacttcc accaaccgga aacgaagaga gcgagcaagg aatggcgcca ttcctcatca       720
     ccaaaaccaa agaagtttcg aacagaacca tcagcaggga aggttatgct gactctcttt       780
     tgggacgaaa aaggcgtcat tttggagcat tacatgccta gagggaccac tgtcaccagt       840
     gcatcataca cagatctcct aaaaaatcat ctgcggcctg caatcaaatc aaagcgacgt       900
     ggattgctgt cagcaggtgt ccttttgcaa catgacaatg caaggcccca cactgcccgt       960
     acaacagttg caacaatcac agacctgcat tttgagtgtc ttcctcatcc accatactca      1020
     ccagaccttg ccccaagtga tttccatatg tttggaccac tcaaagaagc aatgggagga      1080
     aagaagttcc gttctgatga agaggtacgc cacgcggtgc atgagtggtt gcgcggacta      1140
     ccaaaagaat ttttttctaa aggaatttat gcactttgta agcgctggag gacttgcatt      1200
     gagcgtgggg gagattatgt tgaaaagtga tacagctttg taccacttct gcacaataaa      1260
     taatatttaa aaaaaaatat ttaaggtttt catttgactc accctcg                    1307
//
ID   Mariner-8_MMo repbase;    DNA;    INV; 1279 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1279
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6270-6270 (2021).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..1206
FT                 /product="Mariner-8_MMo_1p"
FT                 /translation="MECRNEHFRHILLYYFRKGKNAVQAAKKLRDVYGNEA
FT                 LKERQCRNWFEKFRSGDFSLKDDQRSGRPVELNEDEIKTIIEADRHVTTRE
FT                 IAEKLNVSHTAIEKHLKHLGLVKKLDIWVPHDLKEIHLTKRINACDLLLKR
FT                 NEFDPFLKRIITGDEKWIVYNNFNRKRSWCTLNESSQTTSKAHIQQKKILL
FT                 SIWWDWKGPVYFELLPRNQTINSEVYCRQLDKLNAAVKEKRPELVNRKGVI
FT                 FHQDNARPHTSLATRQKLMDIGWELMLHPPYSPDLAPSDYHLFRSPDNYLR
FT                 GKTFNDDDAVKSHLTQFLAEKDQNFYERGIFKLPERWQKVIEQNGNYIID"
XX
SQ   Sequence 1279 BP; 398 A; 252 C; 258 G; 370 T; 1 other;
     gggttggcaa ctaagtaatt gccgatttca gttatagatg tctcccacct ccatttctat        60
     gatattcgta aatgttatca tcntcttctt cttatatatg ttagttgtca tccttaccta       120
     gcttttgaag ttcattgcgt agatattttc ttaaagtttt ttttttacct caatattaat       180
     atggagtgca gaaacgaaca ttttcgccac attttgcttt attatttccg taaaggaaag       240
     aacgcagtgc aagccgccaa aaagttacgt gatgtgtatg gtaatgaagc ccttaaagaa       300
     aggcaatgtc gaaattggtt tgagaaattc cgttctggag atttttctct taaagatgac       360
     caacgttcag gtcgaccagt tgagcttaat gaggatgaaa tcaaaaccat cattgaagcg       420
     gatcgtcacg taactacacg ggagattgca gagaagttaa atgtttcaca tacagccatt       480
     gagaagcatt tgaaacatct cggtcttgtt aagaagctgg atatttgggt tccgcacgat       540
     ttgaaagaaa ttcatctgac aaagcgcatc aacgcttgcg acttattgct taaacgcaat       600
     gaattcgatc cgtttttaaa acgaatcatc actggagacg aaaagtggat tgtgtacaac       660
     aatttcaatc gaaaacgatc gtggtgcacg cttaatgagt catcgcaaac cacttcaaag       720
     gcacatatcc aacaaaagaa gattttgctg tcaatttggt gggattggaa aggtccggtg       780
     tatttcgagc tgcttccaag gaatcaaacc attaactcgg aggtctactg tcggcaactg       840
     gacaaattga atgcagcggt caaggaaaag cgaccagaat tggtcaatcg taaaggtgtc       900
     attttccacc aggacaatgc taggccgcac acgtctttgg ccactcggca aaaattgatg       960
     gatattggtt gggaattgat gctacaccca ccatatagcc ctgatctcgc gccatcggat      1020
     taccacttat ttcgatcccc ggacaactac ctccgtggta aaactttcaa tgatgatgac      1080
     gctgtaaaat ctcacttaac tcagtttttg gccgaaaaag atcagaattt ctacgagcgt      1140
     ggaattttca agttgccaga aagatggcaa aaggtcatcg aacaaaatgg aaattacatt      1200
     atagattaaa cttcgttccg agtaaaaaaa aaatctttta tttcactgaa caaatcggca      1260
     attacttagt tgccaaccc                                                   1279
//
ID   Mariner-8_PBa repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 621-621 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           413..1210
FT                 /product="Mariner-8_PBa_1p"
FT                 /translation="MVSNDRHLTTREIAERLNIHHSTVADHLKRLGMVNKA
FT                 DVWVPHKLTERNLIERISTCDLLLKRYQFDNFLKRMVTGDEKWILYENVLR
FT                 KRSWQKRGEPAQTVAKAGLHPKKVLLSIWWDYLGVIYYELLPQDQTVNSDK
FT                 YCAQLEKLKRAIAEKRPALLNRKGVVFHHDNAKPHTSLQTRQKLLRLGWDV
FT                 LPHPPYSPDIAPSDTHLFRTLQNNLQGKSFTSVEDVKKHLDNFFAQKSQKF
FT                 YEKGIMELPARWQQIIDQNGEYIVD"
XX
SQ   Sequence 1287 BP; 377 A; 264 C; 298 G; 348 T; 0 other;
     ttaggttgtc ggaaaagttc gtgccgtttc tccgatagat gacgttggca atataaataa        60
     taatgatatg aggtaaattg atatgacttc tatatatcat ttgaaaggga acactgtgct       120
     taacacttta caaatatttt gattgcacag aattgcgttg tgtgtgtgtt gcaatcgtgt       180
     aaagatggac tacaagaaag aacattttcg gcacatttta ttatattatt atcagaaagg       240
     caaaaacgct gcggatgctc gtcgaaagat atgtactgtg tatggggaaa atgccattag       300
     tgaacgcaca agtcgaaagt gatacgcgcg tttccgttct ggaaatttga atgtgaccga       360
     tgctgctcgc tctggacggc catccgcgga tgtcgatgat caactcttgg ccatggtgtc       420
     gaatgaccga catctcacga cgcgggagat cgcagaacgt ttaaatatac accattcaac       480
     cgtcgccgac cacttgaaac gcttggggat ggtgaacaag gccgatgttt gggtgccaca       540
     taagttgact gagcggaatc tcatcgaacg aatttccacg tgtgatttgt tgctgaagcg       600
     ttaccaattc gacaatttcc tgaagcgcat ggttactggg gatgagaaat ggattttata       660
     cgaaaatgtc ctgcgaaaac ggtcatggca aaagcgcggc gagccggccc aaaccgtggc       720
     caaagctggt ttgcacccga aaaaggtgct attatcgatt tggtgggatt accttggagt       780
     aatttattac gagctgctcc cgcaagatca gaccgtcaat tctgataaat actgtgccca       840
     attagagaaa ttgaagcgcg ccattgcaga aaagcggccg gcattgctga acagaaaagg       900
     tgttgtgttt catcacgata acgcgaaacc acatacatct ttgcagactc gtcaaaaact       960
     tttacgctta ggttgggatg ttttgccaca tccaccatat tctcccgata ttgctccatc      1020
     ggatacacat ttgtttcgca ctctacagaa taatcttcag ggaaaatcat tcacttctgt      1080
     ggaggacgtc aaaaagcacc tggacaactt ttttgctcag aagtcccaga agttttacga      1140
     gaagggaatt atggaattgc cggcacgatg gcagcaaatc atcgatcaaa atggagaata      1200
     tatcgtggat tgaataaacg tttcaatgtc tcaatttgat gtctcatttt cacctccaaa      1260
     acggcacgaa cttttccgac aacctaa                                          1287
//
ID   Mariner-8_RPr repbase;    DNA;    INV; 1276 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1276
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3254-3254 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(184..834,838..1008)
FT                 /product="Mariner-8_RPr_1p"
FT                 /translation="MEENKVHFRHILLYYFKKGKRAAEAHKKICCVYGDDA
FT                 LTERVCQKWFANFRSGDFDINDAPRSGRPTEINSDDDKGVIDKDPCESVRE
FT                 IATALNISYTSSKNHLRRLGYVSRLNVWVLHELTEANLATRISICDSLRKR
FT                 QENDPFLKRMVTGDEKWIVYDNVVRKRSWKHCSEPPQTSSKAELHPKKIML
FT                 SVWWDYKGIIYYELLPSGKTIDSTAYCQLTKLDHAIRTKRPELANRKGVVS
FT                 HHDNARPHASLTTRNKLLGCFASSSVFTGPGTF"
XX
SQ   Sequence 1276 BP; 385 A; 258 C; 273 G; 360 T; 0 other;
     tcgggttggc aaataagttc gttcggtttt tattttggta cagattcatt ccgattttct        60
     ttttttattt tcggcgcaag cgcacaactc gattgttcat ttgaaagatt atgttaagct       120
     taacctttct atggatttcg gtttaacaaa cattactatt gtgcttgctg cgtagctgta       180
     aagatggaag aaaataaagt gcattttcgt catattttgc tctattattt taaaaagggc       240
     aaacgagctg cagaggctca taaaaagata tgttgtgttt atggtgatga tgccctaaca       300
     gaacgcgtgt gccaaaagtg gtttgccaat ttccgttctg gagattttga cattaatgat       360
     gcgccccgct ccggtcgccc gaccgagatt aattcagatg atgacaaggg cgtaatcgat       420
     aaagatccat gcgaatcggt gagagagata gcaacagcac ttaacatatc ctatacgagc       480
     tccaaaaatc atttgcgccg gctgggatac gtttctcggc tcaatgtttg ggtactgcat       540
     gaattaaccg aggccaactt agccactcgc atatccattt gcgattcgtt gcggaaacgt       600
     caagaaaatg acccattttt aaagcggatg gtaacgggag atgaaaaatg gatcgtctac       660
     gataatgtag tgcgtaaaag atcatggaag cactgcagtg agccgccgca aacaagctcg       720
     aaggcggaat tgcatccgaa gaagattatg ctctccgtat ggtgggatta taaaggtatc       780
     atctattacg agctgttacc gtcaggcaaa acaattgatt caaccgcata ctgctagcag       840
     ttaaccaaac tggaccatgc aatccgcaca aaacgtccag aattggcaaa tcgcaaaggt       900
     gtcgtctccc accacgacaa cgccagaccg catgcgtcat tgaccactcg gaataaactg       960
     ctgggatgtt ttgcctcatc ctccgtattc accggacctg gcaccttctg attatcattt      1020
     attctgatag ttgcagaact ccatgaacgg aaaaactttc gataatgaga agactgtcaa      1080
     aaaacatttt gattggtttt tcgacgataa gccacagacg ttctacgaac gtggtataat      1140
     gaagttggtg gaaagatggc aagaagttat caataagaat ggtcaatata taattgatta      1200
     aaatttattc tgtgtatcaa aaaaattgtt atttattcca ccctcaaaaa ccgaacgaac      1260
     ttatttgcca acccta                                                      1276
//
ID   Mariner-8_SIn repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   20-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1292
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 324-324 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 36bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1213
FT                 /product="Mariner-8_SIn_1p"
FT                 /translation="MSEISEEIRYVMLFYYKKGKNAAQTCRKICEVYGADA
FT                 VSERRTQEWFVRFRSGNFDVKDRPRSGRPVTEKVDEILQLVEQDRHASCQD
FT                 IANALRINHVTVWNHLKKAGYAKKLDVWVPHELTQRNLIDRISISETLLKR
FT                 NEIDPFLKQIITGDEKWVKYKNIVRKRSWGKRGEPPQTTSKPDLTTNKVML
FT                 CVWWDWKGVVHYEVLPHGLTINSELYCSQLDRLQEAIKEKRPELINRKGVV
FT                 FHHDNARPHTSLMTRQKLRELGWEVLMHPPYSPDLAPSDYHLFRSLQNSLD
FT                 GKTLADKRAAENHLKKFFADKPQKFYTDGIMKLPEKWQKVIDNNGQYILD"
XX
SQ   Sequence 1292 BP; 440 A; 235 C; 279 G; 338 T; 0 other;
     tattgggtca tttaaaaagt atccgcggtt ttttgtcact agatggtgtt gatggtcata        60
     tatcgggcaa cactaatccg attgtatcaa acaaacgcgc gtctgaaaga tgacatttta       120
     ggttatattt tttgtaaaca aagtttggta attcatcaat cgtgtcaaaa gttatattgg       180
     tttgaaaatg agtgaaattt ctgaagaaat acgttatgtg atgctttttt actacaaaaa       240
     aggcaaaaac gcagcacaaa catgcagaaa aatttgtgaa gtttacggcg ctgatgctgt       300
     aagtgaacgc aggacgcagg agtggtttgt tcgatttcgt tctggaaatt ttgatgtcaa       360
     agatcgacct cgctctggtc ggccagtcac tgaaaaagtc gatgaaattt tgcaactggt       420
     cgagcaagac cggcatgcaa gctgtcagga catagccaat gcactaagaa tcaaccatgt       480
     gacagtttgg aatcatttga aaaaggctgg ctacgcaaag aaactcgatg tttgggtgcc       540
     acatgaatta acgcaaagaa atttgattga ccgaatttcc atcagcgaaa cactactaaa       600
     acgcaacgaa atcgacccat ttctgaagca aatcatcacg ggcgatgaaa aatgggtaaa       660
     atacaagaat atcgttcgta aaagatcatg gggtaagcgc ggcgaaccac cacaaacgac       720
     ttcaaagcct gatttgacga caaataaggt gatgctgtgt gtatggtggg attggaaggg       780
     agtcgtccat tatgaggtgt taccacatgg cctaacgatt aattcagagc tctactgttc       840
     acaactggat agattacagg aagcgattaa ggaaaaacga ccagaattga tcaacagaaa       900
     aggtgttgtc ttccatcatg acaacgccag accacacaca tctttgatga cgcgccaaaa       960
     attgagggag cttggttggg aagttttgat gcatccaccg tatagcccgg accttgcacc      1020
     gtctgactac catttgtttc gatctttgca gaactctctt gatggaaaaa cattggccga      1080
     caaaagagct gccgaaaatc acttgaaaaa gtttttcgcc gataaaccac agaagttcta      1140
     cacggatgga attatgaaat tacccgaaaa atggcaaaag gttatagata ataatggcca      1200
     atatatactt gattaaaatt gattttcaat aaagaaaaat ttcattcaaa aattgaacaa      1260
     aaaaccgcgg atacttttta aatgacccaa ta                                    1292
//
ID   Mariner-90_HSal repbase;    DNA;    INV; 1935 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-90_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1935
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 939-939 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           550..1602
FT                 /product="Mariner-90_HSal_1p"
FT                 /translation="MADYPPNEIVDMIRILGEAGNNYSAAERLYAERYPNR
FT                 RHPCRKTIRKLTERAQQGSLKRIRQKSGSSEANSLVVLSAAVLNPQISTRQ
FT                 IERQHGISKSTANRILKINRFHPYHIHLTQKLEQRDFERRLQFCNWALNQI
FT                 RRNPHFIAEMLFSDEATFGNRGGVNRHNYHYYSDQNPHWQRSQEFQRQWSI
FT                 NVWAGILGNDIIGPYFFEQNLNAQYYLAFLQNDLPNLLRHVNNDLLNRMWF
FT                 QQDGAPAHRSRNVTNYLNNRFNNRWIGMGSRTHEWPPRSPDLTPLDFYFWG
FT                 YVKEKVYAEEPTTAENMKERIRETCTNINADVLQKVRDDFRRRLDICIQVN
FT                 GGLFEHLQ"
XX
SQ   Sequence 1935 BP; 629 A; 378 C; 374 G; 554 T; 0 other;
     cagggtgtcc cattttaatg tcccacccca aataactttt ttatttttga ttgtagaaaa        60
     caatgtttca gacaaaagtt gtatggtttt gaggagggca taagatgatg ccattagttt       120
     gacactgaat agtttcttga aggtcacgtg aaggtcatct tcaatttctt aaatggaact       180
     acctactttt cattacatat tcttctagct tacatcgaga gctttccaaa accctataat       240
     taagtacctt ttcgttaagt actttttaag ttataaggca agatcgaaag cacgatccgg       300
     ccggtcaagg caagatcgaa agcacgtgtc attttcagcc taaaattcaa aaaatcaatt       360
     tcttggattt ttgaactttc ggtccaattt tgactatgac aaccacgttt cgacccgaag       420
     tataccccat tacccaagta tacccattac tcaagtatac cccatacgca cgttaaagag       480
     catcgatatt ttcttggcga atgtaatatt ttgagcattg ttacgaaatt ttttagtagt       540
     cctgtaatta tggctgatta tccgccaaac gaaatagtcg acatgattcg tattttgggt       600
     gaggctggaa ataattacag tgcagcggaa aggctgtatg ctgaaaggta tcctaacaga       660
     cgtcatccgt gtagaaagac aataagaaaa ctcaccgaga gggcacagca gggcagttta       720
     aaaaggatac gacaaaaatc tgggtcaagt gaggcaaatt cattggttgt cttgagtgcc       780
     gctgtattga atccccaaat ttccaccaga caaatcgaga gacaacacgg catatcgaaa       840
     tcgacagcaa atcgtatact taaaataaat agattccacc cctaccatat ccatctaacc       900
     cagaaattag aacagaggga tttcgagcga cgcttgcaat tttgtaactg ggccttaaat       960
     caaattcgaa gaaacccaca ttttatcgca gagatgctct tttctgatga agccacgttc      1020
     ggtaacagag ggggcgttaa tagacataat tatcattatt actctgatca aaatcctcat      1080
     tggcaaagga gccaagaatt tcaaagacaa tggtctatta acgtttgggc aggtattctt      1140
     ggaaatgaca tcataggccc atactttttt gaacagaatc taaacgcgca atactattta      1200
     gcatttcttc agaatgatct gcccaacctt ttgcgacatg tcaataatga cttgctcaac      1260
     cgaatgtggt ttcagcagga tggagcacca gctcacaggt cccgaaatgt tacaaattat      1320
     ttaaataata gatttaataa tagatggatt ggaatgggta gtcggactca tgaatggcca      1380
     ccaagatcac ctgacttaac ccctctcgat ttttactttt ggggatacgt aaaagaaaaa      1440
     gtttatgcgg aagagcctac aacagcggaa aacatgaagg aacgtattcg agagacatgt      1500
     acgaacataa acgcagatgt ccttcaaaaa gtgcgggatg attttcgccg taggttggac      1560
     atttgtatcc aagtaaatgg cggtcttttc gaacacctac aataattgta catgccccga      1620
     tcttgccttg accggccgga tcgtgctttc gatcttgcct tataacttaa aaagtactta      1680
     acgaaaaggt acttaattat agggttttgg aaagctctcg atgtaagcta gaagaatatg      1740
     taatgaaaag taggtagttc catttaagaa attaaagatg accttcatgt gaccttcaag      1800
     aaactattca atgtcaaact aatggcatca tcttatgccc tcctcaaaac catacaactt      1860
     ttgtctgaaa cattgttttc tacaatcaaa aataaaaaag ttatttgggg tgggacatta      1920
     aaatgggaca ccctg                                                       1935
//
ID   Mariner-91_HSal repbase;    DNA;    INV; 1451 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-91_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1451
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 940-940 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(469..1023,1027..1194)
FT                 /product="Mariner-91_HSal_1p"
FT                 /translation="HCTRRYALRRPIVTKLYQSISTKTYVWAGIVGTHIIW
FT                 PFFIDGTLTAEKYAAMLRNDIIPAIRNIFGLNFDTVWFQQDGAPPHFGLQV
FT                 RQFLNDTFPERWIGKRGPIEWPPRSPDMNPLDFFFWGYLKDRVYKTKPQNL
FT                 DDLRHRITTEVALITSETLENVSRSFHDRLLQCQVEEGQQFEHLYLTHTHS
FT                 IVHSLTFLHTHAHTHAHTRCKSDRATSTRYILGNANVGGTATFVPHNSEST
FT                 "
XX
SQ   Sequence 1451 BP; 431 A; 296 C; 296 G; 428 T; 0 other;
     cagggtgtgg caaaagtctg gaaacactca aatatctctt aaaaaatgaa ttttagaaaa        60
     aaacgtttca gacaaaagtt gtaaggttta aaaagacgca ttcaacggta atatccgctt       120
     gaccttgggt ggcgttgcca aggtcaggtc aaggtcaacc tgatatttgt aaatggaatc       180
     ccccactttt tattacatat tcttgtagct tacctcgaga gcttttcaaa acactataac       240
     aaagtttttt ttcgttaagt actttccgag ttatgaggca cgaaggttgc agtaccgccg       300
     acattagcat tacccaagat gtaccgcgtg gaggttgcac ggtcggattt acatctcgtg       360
     tgtgcgtgtg tgtgtgcgtg cgtgtgtaaa aaagtgagtg agtgaacgat tgaatgagta       420
     tacgtctaca aatataaatg tttgaattgt tgaccttctt caatttgaca ctgtacccgg       480
     cggtacgcac tcagacgacc gatcgtaacc aaactgtatc aatcaatatc cacaaaaact       540
     tatgtatggg cgggaatagt tggaacgcac ataatatggc cattcttcat tgatggaact       600
     ctaacggctg aaaagtatgc tgccatgctt cgaaacgata ttattcctgc tattcgcaat       660
     attttcggtt taaattttga tacagtttgg tttcagcagg atggtgcccc tccacatttt       720
     ggattgcagg tacgacagtt tttaaacgac acttttcctg aaagatggat aggaaagagg       780
     ggaccaatcg agtggccacc ccgatcacct gacatgaatc ccttggattt tttcttttgg       840
     ggttatttaa aagatcgcgt ttacaaaaca aaacctcaaa atttggatga tttgcgacac       900
     cgaattacca ctgaagtggc attaattacc tccgaaacat tggaaaatgt tagtaggagc       960
     tttcatgatc gactgcttca gtgtcaagtt gaagaaggcc aacaattcga acatttatat      1020
     ttgtagacgc atactcattc aatcgttcac tcactcactt ttttacacac gcacgcacac      1080
     acacacgcac acacgagatg taaatccgac cgtgcaacct ccacgcggta catcttgggt      1140
     aatgctaatg tcggcggtac tgcaaccttc gtgcctcata actcggaaag tacttaacga      1200
     aaaaaaactt tgttatagtg ttttgaaaag ctctcgaggt aagctacaag aatatgtaat      1260
     aaaaagtggg ggattccatt tacaaatatc aggttgacct tgacctgacc ttggcaacgc      1320
     cacccaaggt caagcggata ttaccgttga atgcgtcttt ttaaacctta caacttttgt      1380
     ctgaaacgtt tttttctaaa attcattttt taagagatat ttgagtgttt ccagactttt      1440
     gccacaccct g                                                           1451
//
ID   Mariner-92_HSal repbase;    DNA;    INV; 2130 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-92_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2130
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 941-941 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           592..1644
FT                 /product="Mariner-92_HSal_1p"
FT                 /translation="MADYPPNEIVDMIRTLGEARNNYSAAERLYAEKFPDR
FT                 RHPDRRVIKKLCDKAEQGILKRIRRKSGPNEVTSLAVVGAVVLNPQISTRQ
FT                 IEKQHGIPKSTANRVLRANKFHPYHIHLTQQLEERDFQRRIRFCNWAQDQI
FT                 RANPRFIADILFSDEATICNRGGVNLHNCHYYSDVNPHWQRSREFQRQWSI
FT                 NVWVGILGDVIVGPYFFEGNVNTANYLRFLQNDLPNLLRHVDNDVLNRMWF
FT                 QQDGAPAHRSRAVTEYLNERFPNRWIGMGSRIQEWPPRSPDLTPLDFYFWG
FT                 YIKDKVFSEQPTTVENMKDRIREACRNINAGVLQKVRDDFRHRLELCIQVN
FT                 GQVFEHLK"
XX
SQ   Sequence 2130 BP; 627 A; 436 C; 454 G; 613 T; 0 other;
     cagggtgtcc cattttaata gtgcacctcg attatcattg cagaaagtgc tcggatggaa        60
     aaatgtttta gacaaaagtt gtatggtttc gagggggaca taagatggtg ccattagtgt       120
     gaccttgaat agttgcttga aggtcaggtg aaggtcacct tcaatttctt aaatggaacc       180
     acctactttt catgacatat tcttctagct tacatcgaga gctttccaaa aacctataat       240
     aaagtacctt tttgttaaat actttttaac ttataaggca agatcggggc acggtccggc       300
     cggtcaaggc aagatcggta aacgacccaa aaatccagaa aacgatagag aaaattttac       360
     gttaaaaacg tatcgttctt cggacttcta ttccgctcac gctacagaca gttgtcagtg       420
     tcgtcgcgca gtttctgatc taaacaaaca gtggaagttt attcattgta agaaacagtc       480
     aaaagcatat tattatctac taactttttc ttgttaggat agaaactttt tgtacttttg       540
     cgaagttttt tgtttcctta ttataattgt tttgtttttt ttattataat tatggccgat       600
     tatccaccaa atgaaattgt ggatatgatt cgtacgttgg gtgaggccag aaataattac       660
     tcggcagcag aaaggcttta tgctgaaaaa ttcccagaca gacgccatcc tgataggagg       720
     gtaataaaga aactttgcga caaagctgaa cagggcattc ttaaacgaat acgtcgaaaa       780
     tcgggcccta acgaggtcac atcgttggct gttgtaggtg ccgttgtttt gaatcctcaa       840
     atctctacga gacaaattga gaagcaacac ggtataccca aatcaacagc caatcgtgtg       900
     ctcagggcca acaagttcca tccataccac atccacctaa cccaacaatt agaagagagg       960
     gacttccaac gccgtatacg tttttgtaac tgggctcaag atcaaatccg agcaaacccc      1020
     cggttcatag ctgatatcct cttttctgat gaagccacga tctgcaacag agggggcgtt      1080
     aatttacata actgtcatta ttattcagat gtgaatccac attggcaaag aagccgagag      1140
     ttccaaaggc agtggtctat taacgtctgg gtaggcattc tgggagatgt gattgtgggt      1200
     ccatacttct ttgaaggaaa cgtcaatacg gcaaactatt taagatttct tcaaaatgac      1260
     ctgcccaacc tgttgagaca tgtcgataat gacgtactca accgaatgtg gtttcaacaa      1320
     gacggagcac cggctcatag atctcgagcc gttacagaat acttaaatga aagattcccg      1380
     aataggtgga ttggtatggg cagccgaatt caagaatggc ctccaagatc acccgacttg      1440
     acgcctttag atttttattt ctggggatac attaaagaca aagttttttc ggaacaacct      1500
     acgactgtag aaaatatgaa agaccgtatc agagaagcat gcagaaatat taatgcaggt      1560
     gttcttcaaa aagttaggga cgattttcga catagactgg agctatgcat acaagtaaat      1620
     ggccaggttt tcgaacacct gaagtaatta aacgcaagcc cagatcttgc cttgactggc      1680
     tgggtcgttt accgatcttg ccttgattgg ctgggtcgtt taccgatttg cttgactggc      1740
     tgggtcgttt accgatcttg ccttgactgg ctgggtcgtt taccgatctt gccttgactg      1800
     gctgggtcgt ttaccgatct tgccttgacc ggccggaccg tgccccgatc ttgccttata      1860
     agttaaaaag tatttaacaa aaaggtactt tattataggt tttggaaagc tctcgatgta      1920
     agctagaaga atatgtcatg aaaagtaggt ggttccattt aagaaattga aggtgacctt      1980
     cacctgacct tcaagcaact attcaaggtc acactaatgg caccatctta tgtccccctc      2040
     gaaaccatac aacttttgtc taaaacattt ttccatccga gcactttctg caatgataat      2100
     cgaggtgcac tattaaaatg ggacaccctg                                       2130
//
ID   Mariner-93_HSal repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-93_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1290
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 942-942 (2014).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(181..813,656..1222)
FT                 /product="Mariner-93_HSal_1p"
FT                 /translation="MEKSEFRVLIKHYFLRKKTITETKAKLDKYYGDSAPS
FT                 ISMVKKWFTEFRCGRTSTSDAERSGRPKEVVTPEIVDKIHGMILDDRRMKV
FT                 REVAEAVVGISTERVHHILHEYLDMKKLSARWVPRLLTLDHKRNRVTISKE
FT                 CLAMFSRNPNEFLRRFVTVDETWIHHTTPETKEQSRQWVSSGERAPKKAKV
FT                 GQQGYGHSFLGCTRYHSHRLPTKHGSITPHQRPRNNQDSGFLRVNVHQRRP
FT                 RWANKVMATVFWDARGIIHIDYLEKGKTITGEYYSELLDRFDIDLKQKRPH
FT                 LAKKKVLFHQDNARVHTCVVTMAKIHKLGYELLPHAAYSPDLAPCDYFLFP
FT                 NLKKWLGGKRFGSNEEVITETNAYFEGLEKTYYLEGIKKLEKRWTKCIELK
FT                 GDYVEK"
XX
SQ   Sequence 1290 BP; 405 A; 266 C; 300 G; 319 T; 0 other;
     cgagggcagt ttgataagtc agtgactttt tgaattttcc gcgcagtaac tttaaatgca        60
     gcactgctcc cgtcaactgc catctattaa tagactactg tacaagtttg ggcaagctgc       120
     gccatttagt tagtgtttga cagccattga aagcagacaa cctcgtgaat tttaacgaaa       180
     atggaaaaaa gtgaatttcg tgtgctgatt aagcattatt ttttgcgtaa aaaaaccatc       240
     accgaaacca aggcaaagct tgataaatac tatggggact ctgcaccatc aatttcaatg       300
     gttaagaagt ggtttactga gttccgttgt ggtcgtacca gcacaagtga cgccgaacgt       360
     tcaggtcgcc caaaagaggt cgtcacgcca gaaatcgtcg ataaaatcca tggaatgata       420
     ttggacgatc ggagaatgaa agtgcgtgaa gtggctgagg ctgtagtagg catctcaact       480
     gagcgggtac atcacatttt acatgaatat ttggacatga aaaagctatc cgcgcgatgg       540
     gtgccgcgat tgctcacact cgaccataag cgcaaccgtg tgaccatttc aaaggagtgt       600
     ttggcgatgt tcagccgcaa tccgaacgag tttttgcgcc gtttcgttac cgtagacgaa       660
     acatggatcc atcacaccac accagagacc aaggaacaat caagacagtg ggtttcttcg       720
     ggtgaacgtg caccaaagaa ggccaaggtg ggccaacaag gttatggcca cagttttttg       780
     ggatgcacgc ggtatcattc acatcgatta ccttgaaaag ggtaaaacga tcaccggcga       840
     atattattca gagcttttgg acagattcga tattgatttg aagcaaaaac gaccgcattt       900
     ggcgaagaaa aaagtgctgt tccatcagga caatgcacgg gtgcacacgt gtgtagtcac       960
     catggcaaaa atccataaat tgggctacga actgctaccc catgcagcat attcaccaga      1020
     tttagccccc tgcgactatt tcctgtttcc aaacctgaag aaatggctgg gcggtaagag      1080
     atttgggtcg aatgaagagg tcatcactga aacaaacgcc tattttgagg gccttgagaa      1140
     aacctattat ttggaaggaa taaaaaaatt ggaaaaacgg tggactaaat gtatcgagct      1200
     aaaaggagac tacgttgaga aataaaacgc ttatttgccg aaaaaaatat cttttattaa      1260
     aaaagtcact gacttatcaa actaccctcg                                       1290
//
ID   Mariner-94_HSal repbase;    DNA;    INV; 1264 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-94_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1264
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 943-943 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(170..613,541..1161)
FT                 /product="Mariner-94_HSal_1p"
FT                 /translation="MSFEKQHLRHCLLFAFQLKKNAXEAKEMICSALGENA
FT                 VSYSTCKKWFQKFRDGNFDLQDEERPGQPKKIEDEELEQLLEENPCQTQSE
FT                 LANALAVTQQAISKRLHKLGRIQKAGRWVPHVLSPENKERRRDTAISLLSR
FT                 FKRRTFCTRKQRETPRHGYIPAIKIQKKDFLHKIVTGDEKWVLYDNPKRRK
FT                 SWVYPGEPSTSTAKPNIHAKKVCIWWDRKGVIYYELLKPGQTVTSERYQQQ
FT                 LIRLSDALEEKRPFTGSGRRKVILLHDNARPHTAKTTLEIISDLGWEILPH
FT                 AAYSPDFAPSDYHLFRSLQHHLADSTSNLPRRSKKASMNLSTQNHHRFSEA
FT                 EFDSCLKDGRNV"
XX
SQ   Sequence 1264 BP; 399 A; 267 C; 278 G; 319 T; 1 other;
     ttaggtgtac aacttaattc tcggccccta catttaatca actacagcac ctattcaaat        60
     taaatttttt tccgccatat agtcgtttta aagtgttact tcagctttaa aacggatata       120
     atagttgacg gtgctgccga tataatctca aaaaacagta gtgaaagcga tgtcgttcga       180
     aaagcagcat ctgaggcact gcctcctttt cgcatttcaa ttgaagaaaa atgccgscga       240
     ggctaaggaa atgatttgtt cggccttagg tgaaaatgct gtgtcttata gtacatgtaa       300
     gaagtggttt caaaagtttc gggatggcaa tttcgatctc caagatgaag aacgccctgg       360
     acaaccaaaa aaaattgaag acgaagaatt ggaacaactt ttggaagaaa atccttgtca       420
     gactcaatca gagcttgcaa atgcacttgc agtgacccaa caagccattt cgaaacgtct       480
     acataagctt ggtaggattc aaaaggcggg ccgttgggtt ccgcatgtgc tcagtcctga       540
     aaacaaagag agacgccgcg acacggctat atccctgcta tcaagattca aaagaaggac       600
     tttttgcaca agatagtgac tggtgatgaa aaatgggtac tctatgacaa tccgaagagg       660
     cgaaaatcgt gggtttatcc gggtgagcca tcgaccagta ctgcaaaacc aaacattcac       720
     gcaaaaaaag tgtgtatttg gtgggaccgg aagggcgtta tttactatga gttgctcaaa       780
     cccggtcaaa ctgtcacttc tgagcgttac cagcagcaac tgattagatt gagtgacgca       840
     cttgaggaaa aaagaccttt tactggcagt ggaaggagga aggtgatttt gctgcacgac       900
     aacgcgcggc cacacacggc aaaaacaacc ctggaaatca tctccgactt gggctgggaa       960
     attctccctc acgcggcgta ttctccagac ttcgcccctt cggattacca tctcttccga      1020
     tccctgcaac atcacctagc tgattccact tcaaatctcc cgaggaggtc aaaaaaagca      1080
     tcgatgaatt tatcgactca aaaccaccat cgtttttccg aagcggaatt cgacagttgc      1140
     ctgaaagatg gcagaaatgt gtagaaagtg agggagacta ctttgaagat taggtaatat      1200
     tcgttttttt ataaataaac atcaaagttt gtaaaaaagg ccgagaatta agttgtacac      1260
     ctaa                                                                   1264
//
ID   Mariner-95N1_HSal repbase;    DNA;    INV; 895 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-95N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-895
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 944-944 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. It is an internally deleted
CC   derivative of Mariner-95_HSal.
XX
SQ   Sequence 895 BP; 281 A; 186 C; 200 G; 228 T; 0 other;
     cagtctgtaa agtaagagcg tgcacggcat aaatggcagt tggcttcaaa tatcgtccta        60
     gtttttttgt gagccgatag atgaaatctt tgtcgtgaat gctttgtcac aaaagattca       120
     gttggcgtcg aactctaacc tgagaaacac gttaaccgcc atgagtgccg catacgcatc       180
     gcgctacgag gctgtgttcc tttgttccca ccccaaagga ccaaaaatgt catatgcagt       240
     ggctgctaaa tacatgggaa agtcaaaatc gttcgtcgct aagtgggttc agcaatataa       300
     gaagatcaaa aatgtcgatg acttgccaga acgtggctcg ataggcaaag tgacgccgaa       360
     tatggaaaaa aaaattgtga atttgtttaa gcggaacccg accttaatgc ttaaaattta       420
     tgagaagtgt ttgttgccga ctgctgaacg atgcttcata aaaaaaaaac gaggactgga       480
     tcttacagga agacaacgac ccaaaacacc ggagcaagct ttgcaccgag tggaaagagc       540
     agtctggcat cgtcacactt gattggccat cgcagtcgcc agatgcaaat cccattgaaa       600
     atgtgtgggc atatctcaag cacaagcttc gaggaaaaag agtgtgcact ttgaagcagc       660
     tgacacgaca aattcgtctc atttggaggt ctttaccgaa cgaatacgca gtcaacttag       720
     tggaaagtat gcctcggaga tgccaggcaa ttatcaatgc cggtggtgac tggactcatt       780
     attaatggta tagcattttt cttctcatgg agtacaacaa atccatgtac ttaaaaatca       840
     ttaaaaataa atttttctac acattaaccc gtgcacgctc ttactttaca gactg            895
//
ID   Mariner-95_HSal repbase;    DNA;    INV; 1269 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-95_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1269
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 945-945 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..1156
FT                 /product="Mariner-95_HSal_1p"
FT                 /translation="MSAAYASRYEAVFLCSHPKGPKMSYAVAAKYMGKSKS
FT                 FVAKWVQQYKKIKNVDDLPERGSIGKVTPNMEKKIVNLFKRNPTLTLRQGA
FT                 AKLKQKGIEVSHTTIRTHLLAHNLKYRSTMKKPLLGEKHVTKRLAWAKENL
FT                 DRDWSNVIFTDEASVWGYTAIRRSWSTLTNRLIQRTVKHPVKVHLWGCFSK
FT                 QGFGALHLFTYNLNAPKMLKIYEKCLLPTAERCFIKKNEDWILQEDNDPKH
FT                 RSKLCTEWKEQSGIVTLDWPSQSPDANPIENVWAYLKHKLRGKRVCTLKQL
FT                 TRQIRLIWRSLPNEYAVNLVESMPRRCQAIINAGGDWTHY"
XX
SQ   Sequence 1269 BP; 407 A; 263 C; 278 G; 321 T; 0 other;
     cagtctgtaa agtaagagcg tgtacggcat aaatggcagt tggcttcaaa tatcgtccta        60
     gtttttttgt gagccgatag atgaaatctt tgtcgtgaat gctttgtcac aaaagattca       120
     gttggcgtcg aactctaacc tgagaaacac gttaaccgcc atgagtgccg catacgcatc       180
     gcgctacgag gctgtgttcc tttgttccca ccccaaagga ccaaaaatgt catatgcagt       240
     ggctgctaaa tacatgggaa agtcaaaatc gttcgtcgct aagtgggttc agcaatataa       300
     gaagatcaaa aatgtcgatg acttgccaga acgtggctcg ataggcaaag tgacgccgaa       360
     tatggaaaaa aaaattgtga atttgtttaa gcggaacccg accttaacat tgcgacaagg       420
     agcagcaaaa ttaaaacaga agggtataga agtatcacat acaactattc gaacccatct       480
     ccttgcgcat aacctcaaat atcgaagcac aatgaagaaa ccactgttag gcgaaaaaca       540
     tgtgacgaaa agactcgctt gggcaaagga gaatttggac cgagattgga gcaacgtgat       600
     ctttacggac gaagcttctg tttggggata tactgccatc cgacgttcct ggtcaacctt       660
     gaccaataga ttaatacaac ggactgttaa acaccctgta aaagttcatc tttggggctg       720
     cttttcgaaa cagggttttg gagcattaca tctgtttaca tacaatttaa atgctccgaa       780
     aatgcttaaa atttatgaga agtgtttgtt gccgactgct gaacgatgct tcataaaaaa       840
     aaacgaggac tggatcttac aggaagacaa cgacccaaaa caccggagca agctttgcac       900
     cgagtggaaa gagcagtctg gcatcgtcac acttgattgg ccatcgcagt cgccagatgc       960
     aaatcccatt gaaaatgtgt gggcatatct caagcacaag cttcgaggaa aaagagtgtg      1020
     cactttgaag cagctgacac gacaaattcg tctcatttgg aggtctttac cgaacgaata      1080
     cgcagtcaac ttagtggaaa gtatgcctcg gagatgccag gcaattatca atgccggtgg      1140
     tgactggact cattattaat ggtatagcat ttttcttctc atggagtaca acaaatccat      1200
     gtacttaaaa atcattaaaa ataaattttt ctacacatta acccgtacac gctcttactt      1260
     tacagactg                                                              1269
//
ID   Mariner-96_HSal repbase;    DNA;    INV; 1277 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-96_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1277
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 946-946 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(172..879,854..1096)
FT                 /product="Mariner-96_HSal_1p"
FT                 /translation="MERDKVFFRHVLLHYFDLKKSAAEAYQLLLDTYGEAA
FT                 PSERTCRKWMQRFKEGDIEVQDKKRSGQPKKFDDEELQELLDENPAQTLKE
FT                 LSVALGVDKSTVSRRLHVLGKIHKEGKWVPHQLSESSKLNRLNICISLLAK
FT                 HRKKSFLWRIVTGDEKWMYYENPKRRKSWVDPGQPSTSTPKRNIHGKKIML
FT                 CIWWDMEGVVYHELLNPSEAVNATLYQRQLERLNDELMQKKAVSSQCKKRP
FT                 SVASNRRKVILQHDNARPHVARTVKETLMGLEWEVLPHPAYSPDLAPSDFH
FT                 LFRFHATRLGRHALRQPRGTPKMGR"
XX
SQ   Sequence 1277 BP; 398 A; 263 C; 310 G; 306 T; 0 other;
     ttaggaggtt gcatttcgtg ccgctggaga acagatggtt ctggatgtta ctttagttca        60
     tgccgtagtc gttaggtttt agaggttata catctcgtca tttgtaaaca acatccagtc       120
     aacaaaggtc gtttctgtgt acagaaaaag gtgataaaga gtgaagcgaa tatggaacgc       180
     gataaagtgt ttttccgaca tgtgcttctt cattactttg acttgaaaaa aagtgcagct       240
     gaagcttatc aattgcttct ggacacttat ggcgaagctg ctccttcgga aagaacgtgt       300
     agaaaatgga tgcaacgttt caaagaaggt gatattgaag ttcaagacaa gaaacgctca       360
     gggcagccga aaaaatttga cgacgaggaa ctgcaggagt tattggatga aaatccggca       420
     cagacgctca aagaattgtc agtagccctc ggagtcgaca aatcaaccgt ttcgaggcgg       480
     ctacatgtcc tagggaaaat ccacaaggaa ggaaaatggg tgcctcatca attgtcagaa       540
     agctcaaagt tgaatcgctt gaacatttgc atttccttgc ttgctaaaca taggaagaag       600
     agctttttgt ggcgtatcgt gactggggac gaaaagtgga tgtactacga aaatccgaaa       660
     cggaggaagt cgtgggtgga ccccggtcaa ccttcaacat cgacaccaaa gcggaatatt       720
     cacggaaaga agataatgct atgcatttgg tgggatatgg aaggcgtagt gtatcatgag       780
     cttctgaatc ccagtgaagc ggttaatgcc acactttatc aacgccaact ggagcgattg       840
     aacgacgaat tgatgcaaaa aaaggccgtc agtagccagt aataggcgga aagtgatcct       900
     ccaacatgac aacgctagac cgcacgtggc aagaacggtt aaagaaacac tgatgggcct       960
     ggaatgggaa gttctcccgc acccagcgta ttcccccgat cttgctcctt ccgattttca      1020
     cctgttccgc ttccatgcaa cacgccttgg aagacacgca cttcgccaac ctcgaggaac      1080
     tccgaaaatg ggtcgatgat tggatcgcct caaaagacag gtccttcttt cgacgaggga      1140
     tccagctttt accagaaaga tggcaaaaag tagtcgaaag caatggcaat tactttgatt      1200
     gatgtccgat tgtaacatat tatgaaaata ataaatattc caagtaaaaa acggcacgaa      1260
     ttaatgcaac cccctaa                                                     1277
//
ID   Mariner-97_HSal repbase;    DNA;    INV; 1260 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-97_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1260
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 947-947 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..1078
FT                 /product="Mariner-97_HSal_1p"
FT                 /translation="MNRDKWFFRHVLLHYFDLKKTAAEAHRLISETYGEQA
FT                 PSERTCREWFKRFRRGDFSVEDKERSGQPKKFEDAELQALLDENPTQTLEE
FT                 LSKVLNVTPMAVSKRLRAMGKIQKEGKWLPHELSENAILNRLSIATSLLAR
FT                 LKKNFLWRIVTGDEKWIYFNNPKRRKSWVDPGQPSTSTPKRNIHGHKALLC
FT                 IWWDQEGVLYYELLQPNETVTADRYQQQLYRLNDKLMRKRPSVASNRRKVI
FT                 LLHDNARPHVARTIKETLLELEWEVFSRTQPILQTWPHRITTFSDRCNTLL
FT                 QLRRSPKMGG"
XX
SQ   Sequence 1260 BP; 405 A; 250 C; 273 G; 332 T; 0 other;
     ttaggtgata aacttagttt ccgccgctca cgatagatgg ttccagctgc aaaagtggta        60
     agctttgaca gctgaagctg attgtctttt gaaggttaga catctatcaa taaaattcag       120
     tgcgcaaagg ttaatttttg tgaaagcaga aatatttttt aatcgattta aaatgaatcg       180
     tgataagtgg ttttttcgac atgtacttct tcactacttt gatctgaaga aaactgcagc       240
     tgaagcgcat cgattgattt ctgaaactta tggtgaacaa gctccatcag aaagaacatg       300
     tagagagtgg tttaaacgat tcagacgtgg tgatttcagt gtggaagaca aagaacgttc       360
     cggacagccg aaaaagtttg aggacgccga attgcaagca ttattggatg aaaatccaac       420
     tcaaacactc gaagaattgt caaaagtgtt aaatgttact ccaatggctg tttctaagcg       480
     tttacgcgcc atgggaaaaa tccaaaagga aggaaaatgg ctgccacatg agttgtccga       540
     aaatgccatc ttgaatcgtt tgtccatcgc gacttccttg cttgccaggc tgaaaaaaaa       600
     ttttttgtgg cgcattgtga ctggcgatga aaagtggatt tatttcaata atcccaagcg       660
     gagaaaatca tgggtggacc ccggccaacc atccacatca acgccaaaac ggaatattca       720
     cggtcataag gcattgctct gtatttggtg ggaccaggaa ggcgtgcttt attatgagct       780
     actgcaaccg aacgaaacag tcacggctga ccgctaccaa caacaattgt accgattgaa       840
     cgataaattg atgcgaaaaa ggccatcagt agccagtaat cgacgcaaag tgattctttt       900
     gcatgacaac gcgcgaccac atgttgcaag aaccataaaa gaaacactgt tggagctcga       960
     atgggaagtc ttctcccgca cccagcctat tctccagact tggccccatc ggattaccac      1020
     cttttccgat cgatgcaaca cacttctcca attacgaaga agtccgaaaa tgggtggatg      1080
     aatggcttgc ttcaaaagac agctcgttct atcgtcgcgg aatccaactt ttgccagaaa      1140
     gatgggaaaa agtaatagaa aacgatggaa aatattttga ttaatgtatt aattcatttt      1200
     cttattaaaa taaatgcgtt tttcaagcag aaaacggcga aaaccaagtt tagtacctaa      1260
//
ID   Mariner-98N1_HSal repbase;    DNA;    INV; 516 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-98N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-516
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 948-948 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. It is an internally deleted
CC   derivative of Mariner-98_HSal.
XX
SQ   Sequence 516 BP; 159 A; 105 C; 110 G; 142 T; 0 other;
     taacacatcg atcaataagt cccgggacta accaacaaat ggcgcctcta ataacaaatc        60
     cataccattc tcagttagta ccaaccttta gaagttacgt gtcaaatttt catgacattc       120
     cgacattgtg tcattgagtt acagtggttt tagtgacgct acaccgtgtc acaagtcgat       180
     ggtaacgatg gccaaattgc atgagttgaa cttcgaattg cttccgcacc caccgtattc       240
     tccagatttg gcccccagcg attattggct gttcgcagac ctcaaaaaaa agatgctcca       300
     gggaaagaga tttggctcca atgaagaagt gattgccgaa actaacgcct attttgaaac       360
     caaagatcgt tctacacggc tggcatagaa aagttaggaa agcgttggaa tgaatgtatc       420
     gctcttgaag gagactatgt tgatgaataa agaagaattt tggcaaacaa atgttgtttt       480
     agtagttagt cccgggactt attgatcgat gtgtta                                 516
//
ID   Mariner-98_HSal repbase;    DNA;    INV; 1292 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-98_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1292
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 949-949 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(180..416,377..1225)
FT                 /product="Mariner-98_HSal_1p"
FT                 /translation="MEKTEFRVLIKHCFLMGKNTVQTQRWLEKCYPGSAPS
FT                 KTTICRWYADFKRGRTDTNDAERSGRPNEAVTPENIKKPSKSGCYTRKHKK
FT                 TLKIVMENRKVKLREIADILKISFGSVYTILHEHLVMKKLFSKWVPRLLRM
FT                 EQKQQRIDDSERCLALFTRNKQEFLRRYVTMDETWIHHYTPESNRQSAEWR
FT                 AAGESRPKRPKTQQSAGKVMASVFWDAHGIIFIDYLEKGKTINSEYYIALL
FT                 ERLKAEIAKKRPHMKKKKVLFHHDNAPCHKSMVTMAKLHELNFELLPHPPY
FT                 SPDLAPSDYWLFADLKKMLQGKRFGSNEEVIAETNAYFETKDKSFYTAGIE
FT                 KLGKRWNECIALEGDYVDE"
XX
SQ   Sequence 1292 BP; 410 A; 253 C; 288 G; 341 T; 0 other;
     acacatcgat caataagtcc cgggactaac caacagatgg cgcctctaat aacaaatcca        60
     taccattctc agttagtacc aacctttaga agttacgtgt caaactttca tgacattccg       120
     acattgtgtc attgagttac agtggtttta gtgacgctac ttttgctatt ttcaaaacaa       180
     tggaaaaaac cgaatttcgt gtgttaataa aacattgctt tttaatggga aaaaataccg       240
     ttcaaactca gcgatggctt gaaaagtgtt atccgggctc tgctccgtcg aaaacaacca       300
     tttgtcggtg gtatgctgat ttcaaacgcg gtcgtacaga cacaaatgat gctgaacgct       360
     ctggtcgtcc aaatgaggct gttacaccag aaaacataaa aaaaccctca aaatcgtgat       420
     ggaaaatcgc aaagtaaagt tgcgtgagat agctgacatc ctgaagatat catttggtag       480
     tgtttacact attttgcatg aacatttggt catgaaaaag cttttttcga aatgggtgcc       540
     gcgtttgctc agaatggaac agaaacaaca acgcatcgat gattcagagc gctgtttggc       600
     actgtttacg cgaaataaac aggagttttt gcgtcggtat gtgacaatgg atgaaacttg       660
     gatccaccac tatactccgg aatcaaatcg gcagtcagct gagtggagag cagccggtga       720
     aagtcgtccg aagcgaccaa aaactcaaca gtcggccggg aaggttatgg cctccgtatt       780
     ttgggatgcg catggtataa tattcatcga ttaccttgaa aagggaaaaa ccatcaatag       840
     cgaatattac atagcgttat tggagcgttt gaaggcagaa attgcaaaaa aacggcctca       900
     tatgaagaag aaaaaagttc tctttcatca tgacaatgca ccgtgtcaca agtcgatggt       960
     aacgatggcc aaattgcatg agttgaactt cgaattgctt ccgcacccac cgtattctcc      1020
     agatttggcc cccagcgatt attggctgtt cgcagacctc aaaaagatgc tccagggaaa      1080
     gagatttggc tccaatgaag aagtgattgc cgaaactaac gcctattttg aaaccaaaga      1140
     taaatcgttc tacacggctg gcatagaaaa gttaggaaag cgttggaatg aatgtatcgc      1200
     tcttgaagga gactatgttg atgaataaag aagaattttg gcaaacaaat gttgttttag      1260
     tagttagtcc cgggacttat tgatcgatgt gt                                    1292
//
ID   Mariner-99_HSal repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-99_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 950-950 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1223
FT                 /product="Mariner-99_HSal_1p"
FT                 /translation="MYVNKEKIRYILQFCFDKGENASQAAEIVNGVYGPDT
FT                 VTANHAQFWFRRFRSGNFDVKDASRTGRPVVENVNKIMEMIEVDRHVSSRS
FT                 IAQELKIDHKTVLNHLHKAGFKKKLDVWVPHELTQKNMMDRISICEALTKR
FT                 NEIEPFLKRMVTGDEKWITYDNIVRKRSWSKRSETAQTVAKPGLTARKVLL
FT                 SVWWDYKGIIHHELLSYGQTLNSDLYCQQLDRLKLAIDQKRPELVNRRGIV
FT                 FHQDNARPHTSIVTRQKLRELGWEVLMHPPYSPDLAPSDYHLFLSLQNFLD
FT                 GKKLTSREDCENRLVEFFANKDQGFYERGIMKLPLKWRQIVEQNGAYLTKI
FT                 EQS"
XX
SQ   Sequence 1288 BP; 414 A; 237 C; 291 G; 346 T; 0 other;
     ttaggttggg gaaaaagaaa tccattattt ttccgctaga tggctttagt ggtatatatc        60
     acgtgatgta ttaatcgcat aggttaatat ttatactcgt tggaaaagtg acattccgta       120
     ctaaaaaaaa ttctttaacg gttttgtgat ttgtcgatta agttgtgagt tatagcacgt       180
     aaaagatgta cgtcaacaaa gagaaaattc ggtatatttt acaattttgc ttcgataaag       240
     gcgaaaatgc aagccaggcg gctgaaattg tgaatggtgt ttatggtccc gatactgtca       300
     cagccaatca cgcgcaattt tggtttcgtc gattccgttc cggtaatttt gatgttaaag       360
     atgcatctcg cacaggtagg cccgtcgtcg aaaatgtcaa taaaattatg gaaatgatcg       420
     aagtagaccg gcatgttagc agtcgtagta tcgcccagga gctgaagatc gaccacaaaa       480
     cagttttaaa ccatttgcat aaagctggat tcaaaaaaaa gctcgatgtt tgggtgccac       540
     acgaattgac gcaaaaaaac atgatggacc gaatttcaat ctgcgaagcc ttgaccaaac       600
     ggaacgaaat cgagccattt ctgaaacgga tggtgactgg ggatgagaaa tggattacat       660
     acgacaatat tgtgcgaaaa cgatcgtggt caaagcgcag cgaaacggct caaacggtgg       720
     ccaaaccagg attaacggcc aggaaggttt tgctgagtgt ttggtgggac tataaaggaa       780
     tcatccacca tgagctgctt tcatatggcc aaacactaaa ttcggacctc tattgtcaac       840
     aattggaccg tttgaagcta gcgatcgacc agaagcggcc agaattggtc aataggagag       900
     gaattgtttt tcatcaggac aatgccaggc cacatacgtc tatagtgact cgtcagaaac       960
     tccgggagct tggttgggaa gttttgatgc atccacctta tagtccggac ctggcaccaa      1020
     gcgattacca tctgtttttg tcattgcaaa acttccttga tggtaagaaa ttgacctcaa      1080
     gagaagactg tgaaaatcgc ttagtcgagt tttttgcaaa taaggaccag ggcttctatg      1140
     aaagagggat catgaaatta cctttaaaat ggcgacaaat tgtagaacaa aacggtgctt      1200
     atttgaccaa aatcgaacaa tcctaactat gttaaataaa gccttgaaat aaacgaaaaa      1260
     ataatggatt tctttttccc caacctaa                                         1288
//
ID   Mariner-9N1_ACe repbase;    DNA;    INV; 560 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-9N1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-560
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 518-518 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 560 BP; 151 A; 134 C; 124 G; 151 T; 0 other;
     cgtgggtcgt ttgataagtt tggtaaattt ccatgaaatg gcgctacaat ccatttgatg        60
     acgcgacatc tcgaaagatc cactcttcga accccttcag gccaaatttc agccagaaag       120
     gacgcatagt tcacgtttgg tagtcatttg aagcgagatt ggcgcgcaaa aaagtgctct       180
     tccatcaaga caacgcgccg tcccacaagt cgaccgttgc aatgacaaaa ctacgaattg       240
     ggctatgaat tgattcctca tccaccctat tctccggatt tggccccgtg tgacttcttt       300
     ctgttcccaa acttaaaaac ttggctcggt gggaagaaat tctcgtcaaa tgaggaagtc       360
     attgtcgccg tcaatgagta ttttgcagac tttgcgagac agcctcgctt caaatgacta       420
     ccaaacgtga actatgcgtc ctttctggct gaaatttggc ctgaaggggt tcgaagagtg       480
     gatctttcga gatgtcgcgt catcaaatgg attgtagcgc catttcatgg aaatttacca       540
     aacttatcaa acgacccacg                                                   560
//
ID   Mariner-9_ACe repbase;    DNA;    INV; 1294 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.03, Created)
DT   16-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1294
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 519-519 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..1226
FT                 /product="Mariner-9_ACe_1p"
FT                 /translation="MEKNEFRAVIKHFYLKKWTAAQIKAELNEVHGNSAPA
FT                 LKTIYFWINEFKRGRTCTEDEARSGRPVEITTLDIVEKIHGMIMENRRMKV
FT                 REIAEAVGISTERVHNILHEKLHVKKLCARWVPRLLTLDQKRMRKDVSMQC
FT                 LAMFKRNPQDFWRRFVTVDETWIHHYTPETKQQSKQWIMSGESAPKKAKTV
FT                 LSAGKVMATVFWDSQGIILIDYLQKGKTITGEYYATLLDRLKEELKKKRPR
FT                 LARKKVLFHQDNAPSHKSTVAMAKLHELGYELIPHPPYSPDLAPCDFFLFP
FT                 NLKTWLGGKKFSSNEEVIVAVNEYFADFETAYFSDGIKKLETRWTKCIALD
FT                 GDYVEK"
XX
SQ   Sequence 1294 BP; 391 A; 262 C; 306 G; 335 T; 0 other;
     cgagggtcgt ttgataagtt tggtaaattt ccatgagatg gcgctacaat ccatttgatg        60
     acgcgacatc tcgaaagatc cactcttcga accccttcag gccaaatttc agccagaaag       120
     gacgcatagt tcacgtttgg tagtcatttg aagcgagtgg tttagcagtt tccgcaaaaa       180
     tggaaaaaaa cgaattccgt gcagtaataa aacactttta tttaaagaag tggacagcag       240
     cgcagatcaa agccgagtta aacgaagttc atgggaactc tgctcctgca ttgaagacca       300
     tttatttttg gataaacgaa tttaaacgtg gccgaacctg cactgaagac gaagcgcgct       360
     ccggacgacc tgttgagatt accacattgg atatcgtgga aaaaatccat ggtatgatta       420
     tggaaaatcg tcgaatgaag gtgcgtgaga ttgctgaggc cgtaggcatc tccacggaga       480
     gagtgcataa catcctgcac gaaaaattgc atgtaaaaaa gctgtgtgca cgatgggtgc       540
     cgcgattgct tactctcgat caaaaacgca tgcgaaagga cgtttcaatg cagtgtttgg       600
     cgatgtttaa gcgcaatccg caggactttt ggcgtcgatt cgtgactgtg gacgaaactt       660
     ggatccatca ttacactcct gagacgaagc agcagtcaaa gcagtggata atgtctggtg       720
     aaagtgcgcc gaaaaaggcg aagactgttt tgtcggctgg aaaggtgatg gccactgttt       780
     tttgggattc tcaaggaatt atcctaattg actacttgca gaagggtaag acaataacag       840
     gagaatatta tgcaacgtta ttggaccgtt taaaagaaga gctgaaaaaa aaacggccaa       900
     gattggcgcg caaaaaagtg ctcttccatc aagacaacgc gccgtcccac aagtcgaccg       960
     ttgcaatggc aaaactacac gaattgggct atgaattgat tcctcatcca ccctattctc      1020
     cggatttggc cccgtgtgac ttctttctgt tcccaaactt aaaaacttgg ctcggtggga      1080
     agaaattctc gtcaaatgag gaagtcattg tcgccgtcaa tgagtatttt gcagactttg      1140
     agacagccta cttttccgac ggtattaaaa aattggaaac tcgttggact aagtgtatag      1200
     cccttgatgg agactatgtt gagaaataaa gcagattttt tccaaaaaaa tgtgttttac      1260
     ttgctttttt accaaactta tcaaacgacc ctcg                                  1294
//
ID   Mariner-9_AEc repbase;    DNA;    INV; 1336 BP.
XX
AC   .
XX
DT   24-APR-2011 (Rel. 19.03, Created)
DT   24-APR-2011 (Rel. 19.03, Last updated, Version -1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-1336
RA   Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 552-552 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1278
FT                 /product="Mariner-9_AEc_1p"
FT                 /translation="MELNLQQRVCIKFCVKNGFNGAKTLEMLGNCFGSDVL
FT                 KKTTVYEWHERFRSGRESVEDNERSGRPSTSKTDENINKVREMLANNRKLT
FT                 IRELAEDLNIAYGSVQDIVVNDLGLRRVAAKLVPKELNFMQKRDRVDIAKD
FT                 MISKTESDPTFIKRIITGDETWVYEYDTQSRHQASEWRAPNEPRPKKPRRF
FT                 QSKKKAMLTVFMDYNGIVHHEFLSEGQTVNKEYYLGVMRRLREAIRQKRKD
FT                 LWVNNSWILHHDNAPSHSAIIIREFLVKNKTNTIQQPSNSPDMAPCDFFLF
FT                 DRVKKPLRGTRFNSRKEVMEKSKTALMAIPIIEFQKCFESWIKRWHKCVAV
FT                 AGEYFEGDNITFDE"
XX
SQ   Sequence 1336 BP; 413 A; 256 C; 308 G; 359 T; 0 other;
     taccagcttg atcaaaaagt ttccggaaga gaccaccagg tgatgctctg agtcagctga        60
     tttgagttct tttttttggc taggttgcca catctatcat tgacatttcc atcaaatttt       120
     atcgccatag cttgacattt gtaaaaatta cgccgtcttg agtacatcta cctctgcgcg       180
     tgttttcgat tttttacagt tttaaaaatg gagttgaatt tgcaacaacg agtttgtatt       240
     aaattttgcg ttaaaaatgg attcaatggt gcgaaaacct tggaaatgtt gggaaactgt       300
     ttcggcagtg atgttctaaa gaaaacaacc gtttacgagt ggcatgaacg cttcagaagt       360
     ggtcgtgaat ccgtcgagga taacgaacgc agtggcaggc cgtcgacatc gaaaaccgac       420
     gaaaacatca ataaagtgag agaaatgttg gccaataacc gcaaattaac tatcagagag       480
     ctggcagagg acttaaacat tgcttatgga tccgttcagg acattgtagt taatgatttg       540
     ggtttgcgcc gtgttgctgc aaagttggtc ccgaaggaac tgaatttcat gcaaaaaagg       600
     gaccgcgttg acatcgccaa agacatgatt tccaagactg aatccgaccc aacattcatc       660
     aaacgcatca ttactggaga cgagacgtgg gtttatgagt acgacacgca atccagacat       720
     caggcgagtg aatggagagc tccaaatgag ccaagaccaa aaaaaccacg tcgttttcag       780
     tcgaaaaaga aagcgatgct cacggttttc atggattaca acggtattgt acatcacgaa       840
     tttttgtcag aaggtcagac agttaataag gagtattatt tgggcgttat gagacgtttg       900
     cgtgaagcaa ttcgccaaaa aagaaaggat ttgtgggtaa acaactcgtg gattttgcac       960
     catgataacg caccgtcgca cagtgccatc attatccgtg aatttttggt caagaacaaa      1020
     acgaatacca tccaacagcc atcgaattca cccgatatgg ctccctgcga tttttttctg      1080
     ttcgatcgag tcaaaaaacc actgcgggga acgcgtttta acagccgaaa ggaggtaatg      1140
     gaaaaatcga agacggctct gatggctata ccaataatag agttccagaa atgtttcgag      1200
     agctggatca agcgctggca taagtgcgtt gcagtcgctg gagagtactt tgaaggggac      1260
     aatatcactt ttgatgaata aacttgtatt ttgaattttc tgaatgaatt ccggaaactt      1320
     tttgatcaag ctagta                                                      1336
//
ID   Mariner-9_BM repbase;    DNA;    INV; 1645 BP.
XX
AC   .
XX
DT   28-APR-2010 (Rel. 15.07, Created)
DT   28-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Mariner-like DNA transposon - consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1645
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 944-944 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           296..1387
FT                 /product="Mariner-9_BM_1p"
FT                 /translation="MPGSRRHMDVETATRAVFMLQEGESQRSVARRLGVSR
FT                 RAIRNAWERFLEXGSVTRRSGSGRARATTVQEDRYIRLTARRERTIFARVL
FT                 QNRLRQSTGTRIGDQTIRNQLHEDGQRSRSHVIRLKLTRAHRAARLRFARE
FT                 HAEWTTDNWRNVLFTDESKVKFFSDDRRVRVWRREGERFSEPCIRERDRFG
FT                 GPNVMVWAGISLLGKTELVILEEGPITASRYVDRIIRPHVIPFSQRVGENF
FT                 VFMQDNARPHTARTTQRAYFVFMQDNARPHTARTTQRAFSEANITVLPWPA
FT                 MSPDLNPIEHLWDQLKRSLKSNFSNVTNRQELINALKLCWGRIPEENITHL
FT                 IESVPDRVRECIRNRGGPTRY"
XX
SQ   Sequence 1645 BP; 511 A; 341 C; 357 G; 435 T; 1 other;
     ctcaaaacaa aatagggccc actctaagtt aatctcgaat ttcgtctaaa aaaaattgtt        60
     tggtagtaaa tagtgaagtt aaacatttcg aagtattgtt gacatgttta tctaacgtta       120
     tcaatgtttc aagtcaggaa ttcaatggtg tgtagacaaa aaaagtgaag tactccaaaa       180
     aacgtttatt actcaaattc tcagtcattt gtaccctcag tcacgttctg aatgttacag       240
     tcgcacgtct actttttttc attttgactt gatttcggtg ttactcgcga tcattatgcc       300
     tggctctcgg cgtcatatgg atgtggaaac agcaacaaga gcagtgttta tgcttcagga       360
     gggagaatct cagagatcag tggcaagacg tcttggtgtg tcgcgacgag ctattcgaaa       420
     cgcgtgggaa cgctttctag agncaggtag tgtcacgagg agatctggat caggaagagc       480
     gcgagctaca accgtccagg aagaccggta tatcagattg actgcacgtc gagagcgtac       540
     gattttcgcc cgcgtcttac aaaatcgact gcggcaatcg actggcacac gaattggtga       600
     tcaaaccatt cgaaatcagc tccatgaaga cggacaacgt tccagatctc atgttattcg       660
     tctaaaattg acaagagcgc atcgtgcagc gcgtttgagg tttgctcgcg agcacgcgga       720
     gtggacaacg gacaactgga gaaatgtact ctttacggac gaaagtaaag tgaagttttt       780
     cagcgatgat cgtcgagtgc gcgtgtggag aagagaagga gaacgttttt cagaaccttg       840
     catacgtgaa agggatcgtt ttggaggtcc aaatgttatg gtgtgggctg gaataagctt       900
     gctcggtaaa actgagctgg taattctgga agaaggcccc ataactgcct cccggtatgt       960
     cgatcgaata attcggcccc atgtcatccc attttcacaa agagtgggtg aaaacttcgt      1020
     ctttatgcaa gacaatgctc gcccacatac agcgcgaaca acccagagag cttacttcgt      1080
     ctttatgcaa gacaatgctc gcccacatac agcgcgaaca acccagagag ctttctctga      1140
     ggccaatatt acggttttac cgtggccggc catgagtccc gatcttaacc ccattgaaca      1200
     tttatgggac caactgaaaa gaagcctcaa atcgaacttc agtaatgtga ctaatcgaca      1260
     agagctcata aacgccctaa aattgtgttg ggggcgaata cccgaggaaa acatcaccca      1320
     cttgattgaa agtgtcccag atagggtcag agagtgcata cggaacagag gaggacctac      1380
     tcgctattaa gcaccatcaa actcattgat ttagtcaata ataaaaatca aaatcaaact      1440
     ttacttaaat caataatttc tgtcaacttt cctaaaaact gtaaattttg actaaattcc      1500
     ataaaattgg caaaacttac tcttgttaat gtttacacac tttcaaaaac cttaatttat      1560
     tcattcctaa tcataaaaac tgaaaaaaga aaaagaatct gtaaaattca tttaaaaaac      1620
     atggtgggcc ctattttgtt ttgag                                            1645
//
ID   Mariner-9_CFl repbase;    DNA;    INV; 1287 BP.
XX
AC   .
XX
DT   13-APR-2012 (Rel. 19.04, Created)
DT   13-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; nonautonomous;
KW   Mariner-9_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1287
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 813-813 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..1211
FT                 /product="Mariner-9_CFl_1p"
FT                 /translation="MSNYEPTKHHLREVLLFLFNSKKSAAESHRVLLETYG
FT                 EHTPSIKTCEYWFRRFRSGDFDTVDKERPGQPKKFEDEELEALLDQDSCQT
FT                 QDELAESLNVDRTTVSKRLNALGMIQKQGNWVPYELKPRDVERRFFTCEQL
FT                 LQRQKRKGFLHRIITGDEKWIRYDNPKRRKSWGLPGHASTSTARPNIHGSK
FT                 LMLCIWWDQLGVVYYELLQPNETITGERYRTQLMRLSRALKEKRPQFEQRH
FT                 DKVIFQHDNARPHVARVVKKYLETLKWDVLPHPPYSPDIAPSDYYLFRSME
FT                 HGLAKQRFQSYEDTKNWIDWWIASKDELFFRRGIRMLPERWEKVVASDGQY
FT                 FEK"
XX
SQ   Sequence 1287 BP; 404 A; 249 C; 280 G; 354 T; 0 other;
     ctaggactgt gaattaattt tgagggattt acaatagatg gcgtaactta tgctatatcg        60
     catcggacac ttctgtaact atattcatgt caaagctctg tcattaggct ttacttttta       120
     ttatgtgtca ttttgctgaa gtgtaaacaa catatttttt ctcagctccg aagatgtcga       180
     attacgagcc aacaaaacac catttgcggg aagttttact tttcctgttt aattcaaaga       240
     aaagtgctgc tgaaagtcat cgagtgctgt tggaaactta cggtgaacat actccatcga       300
     taaaaacgtg tgagtattgg tttcgacgtt ttagaagtgg tgatttcgat acagttgaca       360
     aagaacgccc tggtcaaccg aaaaagttcg aagatgagga attggaagca ttactcgacc       420
     aagattcatg tcaaacgcaa gatgaacttg ctgaatcgtt gaatgttgat cgcacaacag       480
     tttccaaacg tttaaatgca ctcggtatga ttcaaaagca aggaaattgg gtgccatacg       540
     aattgaagcc gagagatgtt gaacggcgat ttttcacgtg cgaacaattg cttcaacggc       600
     aaaaaagaaa gggttttttg catcgtatca tcactggcga tgaaaaatgg atacgctacg       660
     ataatcctaa gcgtagaaaa tcgtggggtt tgcctggtca tgcatcaaca tcgacggcaa       720
     ggccgaatat tcatggttcg aagctcatgc tctgtatttg gtgggaccag cttggtgttg       780
     tgtactatga gctgcttcaa ccgaatgaaa ccatcactgg tgaacgctac cgaacacaat       840
     tgatgcgttt gagccgtgca ttgaaggaaa aacggccgca attcgagcaa aggcacgata       900
     aagtaatttt tcaacatgac aacgctcgac cacatgttgc tcgtgtagtc aaaaaatact       960
     tagaaacgct gaaatgggat gttttacccc acccgccata ttcaccagat attgctccat      1020
     cggattacta cttgttccga tccatggaac acggcctggc taagcagcgc ttccaatctt      1080
     acgaagatac gaaaaattgg atcgattggt ggatagcatc aaaagatgag ttgttctttc      1140
     gacgcggaat ccgtatgctg ccagaaagat gggaaaaagt agtggctagc gatggacaat      1200
     actttgaaaa ataataatgt acacaatttt tcacaataaa gccttgaatt tacaaaaaaa      1260
     tccctcaaaa ttaattcaca gtcctag                                          1287
//
ID   Mariner-9_DAn repbase;    DNA;    INV; 1645 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Mariner/Tc1 DNA transposon from fruit flies.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1645
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 265-265 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 27-bp TIRs. TA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..1323
FT                 /product="Mariner-9_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MGRGKSLTDFEKGQIKGYIESGLKHNEIAKKIGRSQN
FT                 VVSNFLRNEADYGKKMIGGKKYATTASERRLILRTASNSHLSASKIRDECG
FT                 VNASLATVKRVIRSAKHLKRLKIKKKPPLNDARKEARLRFARDHMTWNKEW
FT                 KAVVFSDEKKFNLDGPDGYNYYFHDMRKEECFLSRHHSCTGGVMVWGAISF
FT                 YGTCELQFVSSKMNANVYKTVLQKAFPQFSEIFGPIQWTYQQDNAPIHTAR
FT                 VTKQWIKDQNVNLLEWPPYSPDINIIENIWGLLSRRVYEGGRQFQDSATLV
FT                 EAIKKAWATISLSEIEKYYDSLSNRMFGIIKNRGGHTKY"
XX
SQ   Sequence 1645 BP; 548 A; 269 C; 321 G; 507 T; 0 other;
     cagtgccgct caactgaata ggtttgaaaa ttatttcttc tatttttatt tctctctttg        60
     ttcctatggc atttgtgcat tctttctttt ttgttttgaa cattcatttg ttttctcata       120
     atatgaaaac aaaaatttaa cgggttgtat gcaacggtaa atcagaattt tgctttcatc       180
     gtgaaattcg ctaaatgtgt gttctatttt tggctcatct gattaggttg gacaactttg       240
     acttcacttt gtgactgact gcgtgattga aaacatataa tttcttttgt ttacttaaat       300
     ctaaagtaat tgctacaatt tttttttaat atgggtcgcg gaaaatcttt aaccgatttt       360
     gaaaaaggtc aaattaaagg ctatattgaa tctggcctaa aacataatga aatagcaaag       420
     aagattggtc gaagtcaaaa cgtggtaagc aattttcttc gtaatgaagc cgattacggg       480
     aaaaaaatga taggaggaaa aaaatatgct acgacggcat cagagaggcg attaatcctt       540
     cgaactgctt cgaattccca cctgtctgcc agtaaaatca gggatgaatg cggtgtaaat       600
     gctagtttgg caacggtaaa acgagttatt cggagtgcta aacacttaaa gagattaaaa       660
     ataaaaaaaa aacctcctct caatgatgca cggaaggaag cgcgacttcg atttgcgcgg       720
     gatcacatga catggaacaa ggagtggaag gctgtggtct tctccgatga aaaaaagttc       780
     aatctcgacg gaccggatgg ctacaactat tattttcacg atatgcgaaa agaggaatgc       840
     tttttgagtc gtcatcactc ctgtacagga ggcgtaatgg tttggggagc catatcgttt       900
     tatggaactt gcgagctgca gtttgtttca tcaaagatga atgcaaatgt ctacaagact       960
     gtgctccaaa aggcttttcc ccagttttcc gaaatttttg gacctattca atggacgtac      1020
     caacaagaca acgcccccat ccatacagcc cgggttacaa aacagtggat taaggaccag      1080
     aatgtgaact tgctcgagtg gccgccatac tccccagaca taaatattat cgagaacatt      1140
     tggggacttt tatccaggag agtgtatgaa gggggaagac aatttcaaga ctcggcaacc      1200
     ctggttgaag cgattaaaaa agcctgggca actatttcac tgagtgaaat tgaaaaatat      1260
     tacgattcct tatcaaatcg aatgtttgga ataattaaga ataggggggg tcataccaaa      1320
     tattaaataa ttcagaaata atgtctttta ttctttaagt taccaagtac catgaaatat      1380
     tgctgtgaat aatttttttt aatagttttg ttggtcaaac ctattcactt gagccaaaaa      1440
     taatgtaggt tttcagctat gtttttgaaa aaaaaataaa aaaaatataa aaaccaaacc      1500
     aaaaaaaaaa aaacttttgt attttataaa gaattgatcg ttttacttaa aaaaaattat      1560
     ttggtttaaa tccgagtgct cgttatgaag atattatgtt ctaagtctaa aaaagaagtc      1620
     aaacctattc agttgagcgg cactg                                            1645
//
ID   Mariner-9_DBp repbase;    DNA;    INV; 1658 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1658
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 592-592 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs, 244-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1658 BP; 534 A; 301 C; 322 G; 498 T; 3 other;
     cactcctgcc caaaattata cgacaccttt aaattttttg tttcggcgct cgtagcagaa        60
     tgcgaaatcg aaaacgatca aaacaaagta tgagggatga tagcacaatg tttaatgcac       120
     aaaatgagat attttttact ttttttgcat ctcccgtttt cgagtaacgg taaaaaaagg       180
     acacacgctt caattttagc tacgctgcac gtgtatcaaa attatacgac acatttagat       240
     ttttgctgtt ggcgcgaaag atttggtgcg aatttgtttt atttaaagtt ctgctaagca       300
     tttaattagt ttttaataaa atgccgcatg gttgcttatt aagagaagaa gaaaagggaa       360
     gaataagagc ttacaacgat gccggattca atattagcaa aatatcgcgg atwatgggtc       420
     gaacacgctg tgttatcact aaatttttaa acgatccgga tggatatggt cttaaacgta       480
     gctccgacag aaaacccaag ctgtccgatc gtgataaacg aagcatattg aaaaaagcaa       540
     gcaattcttt tctatcatgc gcctcamttg cagcgtcttg cagtcttcct gtgcctcgga       600
     tgactatctg gcgaactttg caagcctcgg aatttattgt aaggggagtt ttaaaaaagg       660
     ctccattcct aaagccccaa cacaaagaag cacgccttca gtttgctgaa aaaaatttgg       720
     aaaccaactg ggcctcggta tggaatttca actccatttt gtttatacga atttaatcaa       780
     tatttctcac ttagataatt ttttctgatg agaaaaaatt taatctkgat ggcccagatg       840
     ggtttcgtca ttattggcga gatttgcgta aggatcccct catgttttca aggcgcaatt       900
     tcggaggtgg atccgcaatg gtttggggag cctttcatgc gtctggaacg cttaatctgt       960
     gctttacgag ctctcgcatg aatagcacag actacaaaaa agtattagag gatcgtcttc      1020
     tgccattttt gaaccaaaat gaggaaagaa aatatgtttt tatgcaggat aatgcatcaa      1080
     tccataaaag caaagaaacc caacgatttt taaacgagca ttccgtgaag gttttggatt      1140
     ggccagcttg ctctccggac cttaatccta tagagaacct atggggtatc ctagccagac      1200
     gagtttacgc caacaacact aaatttgaca ccgtcaatag tcttaaacag gaaattttgg      1260
     cacaatgggc cctcctagac caaaatatgc taaaaacatt aataaaaaca atgactaaaa      1320
     gaatgtttga ggttggaaaa gctcaaggag gtgttattaa ctattaatct ttcataaata      1380
     atcacaaata aaataaaata ttcattgtat ctataaatat tgaaatgtgt cgtataattt      1440
     tgatacacgt gcagcgtagc taaaattgaa gcgtgtgtcc tttttttatc gttactcgaa      1500
     aacgggagat gcaaaaaaag tcaaaaatat ctcattttgt gcattaaaca ttgtgctatc      1560
     atccctcata ctttgttttg atcgttttcg atttcgcatt ctgctacgag cgccgaaaca      1620
     aaaaatttaa aggtgtcgta taattttggg caggagtg                              1658
//
ID   Mariner-9_DEl repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1637
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 422-422 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 29-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(87..311,331..588,576..1364)
FT                 /product="Mariner-9_DEl_1p"
FT                 /note="transposase."
FT                 /translation="MRRKTKNIFLPMCMPNFISFTFCIHFLLIRMHADNGF
FT                 LRGTSILTASLWKYFHTFKHARTNELLCFTWSNIKRCYKSVNNMGKTAELS
FT                 LVTRSSIVAKFNAGIAVKDIANEFCVSRQTVHYQIKKFKKHNDMRNLRRSG
FT                 AKRKTDLSEDRVLVREFKKNIFKEYFLKPQSAADQFNLTAKTPISERTVRR
FT                 RLKECDFKTYKAKDVPYITEKNKLKRLSFAKEHLHKPKEFWRSVLWTDESS
FT                 FEYNSSKNKFFVRLPMVQRQKRRPVCQKVSHGGGSVMFWGCVAYNGLGDLV
FT                 PVTGSMNQGQYLRVLNDNAFSSGDRLIGHTFILQQDNAPCHKAKMITTFLK
FT                 DVGVTTLDWPPQSPDLNIIENVWSLIKRKRTVSLNKTREETISEVTSLWEE
FT                 ISLEIIQNLVDSVPRRLQKVVETKGNYIFY"
XX
SQ   Sequence 1637 BP; 553 A; 277 C; 309 G; 497 T; 1 other;
     cactagtcgg cataattatt ttgacgaaac tcttttttga ctattgaact tagcgttgct        60
     ggaaatcgtc aaataacggt gcgaaaatga ggcgcaaaac aaagaatata tttttaccta       120
     tgtgcatgcc aaattttatt tcctttacct tttgcattca ctttctactg ataagaatgc       180
     atgcggacaa cggttttctg cgtggcacaa gtattttgac agcatcttta tggaaatatt       240
     ttcacacttt taagcacgcg agaaccaatg aacttctgtg tttcacttgg agtaatatta       300
     aacgttgtta ttaaaacaga aagttattaa aaatcagtca ataacatggg taaaacggct       360
     gagctaagtt tggttaccag atcttcaata gtagcaaagt ttaacgctgg aatagcagtc       420
     aaagacattg ccaatgagtt ttgtgtgtcg cgtcaaactg tgcactacca aattaaaaag       480
     tttaaaaagc ataatgacat gcgtaattta agaagatcgg gtgctaagcg caaaacagat       540
     ctcagtgaag accgagtcct tgtacgggaa tttaaaaaga atatttttta aagccccaat       600
     ccgcagcaga tcaatttaat ttgacagcta agacaccgat tagtgagcgc acagtccgtc       660
     ggcgattaaa agaatgcgat tttaagactt ataaagccaa ggacgtacca tatataacag       720
     aaaaaaacaa gctgaaaaga ctgtctttcg caaaggaaca tcttcataag ccaaaggagt       780
     tctggagaag cgttctatgg acagatgaaa gctcctttga gtataattca tcaaaaaata       840
     aattttttgt aagattacca atggtmcaaa ggcagaaacg gcggcccgtt tgccaaaaag       900
     taagccatgg tggaggctct gtgatgttct ggggatgtgt ggcttataat ggactgggtg       960
     acctcgttcc tgtcactggc tcgatgaacc aaggccagta tttgcgggtt ctaaatgata      1020
     atgcgtttag ttccggagac aggcttattg gacacacctt cattttgcaa caggataacg      1080
     ccccatgtca caaagccaaa atgattacaa catttttgaa ggatgttggt gttaccactt      1140
     tggactggcc acctcaaagt ccagatttaa atataattga aaacgtctgg tctcttataa      1200
     aacgtaaaag aacagtatcg ttgaataaaa ccagagagga gacaatttct gaggtcactt      1260
     ccctttggga agagatatct ctagagatta tccaaaattt ggtcgattca gtaccgcgac      1320
     gcttgcaaaa agttgttgaa accaaaggaa attatatatt ttactaaatt attttttttc      1380
     ctttggtttt tttaagttta agctttatta ttcatattaa aaggtacttg tcaaaatact      1440
     tatgccacca catgaaaatt actttagctt atattttttt aagttcatat gacaaaatgt      1500
     tgaattcatt atttttaagt ttgtattagc actaagtaaa acagaaaaaa aaatcattga      1560
     gttatattaa accattaaaa agttacatac aaatttgaac cattagtttt tcgtcaaaat      1620
     aattatgccg actagtg                                                     1637
//
ID   Mariner-9_DF repbase;    DNA;    INV; 1660 BP.
XX
AC   .
XX
DT   02-JUN-2012 (Rel. 17.06, Created)
DT   02-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1660
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 776-776 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TA TSDs. 26-bp TIRs. The consensus
CC   is ~96% identical to that of Mariner-8_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           344..1336
FT                 /product="Mariner-9_DF_1p"
FT                 /note="transposase."
FT                 /translation="MGRGKHCTPERRDLIKNLISSGKTYKEVQKIIGCGAS
FT                 MIRNALKFSPKPETRGRPQVLADKLATRVARYSKKHPFASCKEIKDELNLD
FT                 ASIPTISRLLKKQNLTAHSPRKIPFHTKKHIAARMKFAKSHVNWSVEKWRN
FT                 ILWSDESKIVLYGGKGSRQYVRRPPNTEFNAKYCIKTIKHGGHNIMIWACF
FT                 SYYGVGPIYWIKNIMDGPGYVQIMQETMLPYASEEMPLVWVFQQDNDPKHT
FT                 SKVAKKWFADNKIAVLEWPAQSPDLNPIENLWTDVKKAVAERHPTNVSELW
FT                 EIVKASWTSIRPERCQKLVDSMPRRCAAVIANKGGATKY"
XX
SQ   Sequence 1660 BP; 534 A; 302 C; 313 G; 511 T; 0 other;
     cagctgtttt caaaataata ggagtgcttt tgcatatgca cttgtccctt ctgtagcaat        60
     gttatgcgtt catttttttc aattttattt ctttttccaa atttgtttat ggatacacat       120
     tctgaggtac cgttattttt tcattttact atcttcgttt tctgagaatt acccaaattc       180
     gtaaacaaac ttcattttgc gctcatcaaa ataataggag tgtgccattt taatctgttc       240
     agagcgcaaa aaaaggtaat tattcttaaa aaaacggctt aaaagtatag aatgattaat       300
     atccaactac aattttaacg tttaagatcg aaaatttaaa gcaatgggtc gtggcaaaca       360
     ttgcacacct gagcggcgtg atttgatcaa aaacttgatt tcaagtggga aaacgtacaa       420
     ggaagtacaa aaaataattg gatgcggtgc ttccatgatc cgaaatgcac taaaattttc       480
     acccaagccg gaaacccgcg gccgacccca agttctagcc gataaactgg ctacacgtgt       540
     tgcaaggtac tcgaagaagc atccttttgc aagctgcaaa gaaatcaagg atgagcttaa       600
     cttggacgca agtatcccaa caataagtcg tcttttaaag aagcaaaatt tgactgccca       660
     cagtccacgg aaaattccat tccacaccaa gaagcacata gccgcaagaa tgaaatttgc       720
     aaagagccat gtcaactggt cagttgaaaa gtggcgtaac atcttgtggt cggatgagtc       780
     gaaaatagtc ctttatggtg gcaaaggatc tcgacagtac gttagaagac cacctaacac       840
     cgaatttaat gccaaatatt gcattaaaac gatcaaacat ggcggacata atataatgat       900
     ttgggcatgt ttctcgtact atggcgtagg tccaatatat tggattaaaa atattatgga       960
     tggtcctgga tatgtccaaa taatgcagga aacaatgctg ccttatgcta gcgaagaaat      1020
     gccactggtt tgggtcttcc agcaagacaa tgacccaaag cacacaagta aagtggctaa      1080
     gaagtggttt gcagacaata agattgcagt acttgaatgg cccgcccagt cccccgatct      1140
     gaatccgatc gaaaatttat ggacagacgt taaaaaggcg gtcgcagaaa ggcatccaac      1200
     taatgtttcc gagctttggg aaattgtaaa ggcctcttgg acctcgattc gtcccgaaag      1260
     atgccagaaa ttggtggatt ccatgccaag gcgctgtgcg gcagtgatag ccaataaagg      1320
     tggtgccacg aagtactaat tatagttttt tttaattaca tttaacatta aattacttaa      1380
     tataaccata ttttatcgtt atatattatt ttcaaaagtt ctgagagaat ttgcttgaac      1440
     gctcctatta ttttgagaaa cccatattgg gtgttgttcc cttttttatt tttttttaag      1500
     tatgtattta atgaagtaac tttttttagt tttaattact ttaatacaag tcatatttgt      1560
     taaaaaaaat gaatttaaga aatttaattc gtattgacat agtttttttc accgattttc      1620
     acattcgtga tggtcactcc tattattttg aaaacaactg                            1660
//
ID   Mariner-9_DK repbase;    DNA;    INV; 1763 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1763
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1202-1202 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 248-bp TIRs. TA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           397..789
FT                 /product="Mariner-9_DK_1p"
FT                 /note="HTH."
FT                 /translation="MARGKPICKEIRILVLNNYKNGKSFGEIAKQFNLAKS
FT                 SVQGIIKKFKENGNIENNIAKRGRKSAITARDKRALAAIVKADRRQNCRNI
FT                 ASEWSDKIGKGVKRECTRLKLREIGYKFYKVCTVIDYVTYLID"
FT   CDS           870..1466
FT                 /product="Mariner-9_DK_2p"
FT                 /note="transposase."
FT                 /translation="MSWTQRQWNTIIFSDEAKFDVSVGDARRRVIRTKAYH
FT                 KDCLKRTVKYPASIMVWGCMSAKGVGQLHFIDGMVNAEKYVNILEESFLPS
FT                 IPKLADCGEYTFQQDGASSHTAKRTKSWLQNMNIEVLDWPSNSPDLSPIEN
FT                 IWGIMKRKLKNEPQRTLSELKLKIQEVWDSISREQCQNLLKSMPNRCKCVV
FT                 KVKGDVTQY"
XX
SQ   Sequence 1763 BP; 649 A; 277 C; 338 G; 499 T; 0 other;
     cgagccccga ccactattaa ttcgtacggc agctttttta ctcgtataaa atgttcagca        60
     aacgatattg tccataataa cgtacaccac atataaaaat gattttttat agtactataa       120
     ctttattctc ttaagtttaa aacaaaaaaa tttattgtat ttcgacaaca acaacaataa       180
     tatttattta ttttaatgtg ttattaaaat gataatataa attcgaccac tattaattcg       240
     tacggtgcca aaagcttagc ttagaattaa aagaagatcc aaacaaaagg aaacagtgaa       300
     acataatcac tatctagtct tttgctgtaa actgtttaac aaagcagaat gcaaaataaa       360
     gtgcgattgc tgaaaattac tcatagttaa gctacaatgg cacgaggaaa gccaatttgc       420
     aaggaaataa gaattttagt tctgaataat tataaaaatg ggaaaagttt cggtgaaatt       480
     gccaagcaat ttaatctggc taagtcgtcc gttcagggaa taattaaaaa atttaaggaa       540
     aatggcaata ttgaaaataa tatcgcaaaa agaggccgaa aatcggcaat aacagcacgt       600
     gacaaaagag ccctggcggc tattgtaaag gctgatcgtc gtcaaaattg tcgaaatata       660
     gcatctgagt ggtctgataa aatcggaaaa ggtgttaagc gagagtgtac gcgcttgaag       720
     ttgcgtgaga tcggatataa gttctataag gtatgcactg tgatagacta tgttacatac       780
     ttaatagatt aacttactct taggccaagg aaaaaccatt gcttacgctt cgtcaaaaga       840
     agaagcgttt acaatggtca cgggaaagga tgtcctggac tcaaaggcaa tggaacacta       900
     tcatatttag cgatgaagct aaatttgatg taagtgtcgg cgatgcgcga aggagagtca       960
     tccgtactaa agcctaccat aaagactgcc ttaaaagaac agttaagtac ccagccagca      1020
     ttatggtgtg gggttgtatg tctgccaaag gagtggggca gctgcacttt attgatggga      1080
     tggtcaacgc agaaaaatat gttaacatct tagaagaaag ctttctgcca tcaataccaa      1140
     agctggctga ctgtggcgaa tacacctttc agcaggatgg agcatcatct catactgcca      1200
     aacgaaccaa atcatggctg cagaatatga acattgaggt cttagattgg ccatcaaata      1260
     gtccggacct aagtcctatc gagaatatat ggggaataat gaaaagaaaa ctaaaaaatg      1320
     aacctcaaag aaccctgtct gaattaaaac ttaaaatcca agaggtttgg gactctattt      1380
     caagagagca atgccaaaat ttattaaaat caatgccaaa tcgttgtaaa tgtgtcgtta      1440
     aggtcaaggg tgatgttacc caatattaat attaaaaaac aacctagtat ttcgtataaa      1500
     aagttaatat taaacgcacc gtacgaatta atagtggtcg tatttatatc atcagtttaa      1560
     tgacacatta aaataaataa acactattgt tgttgttgtc gaagtacaat aaattttttt      1620
     gttttaaact taagagaata aagttatagt actataaaaa atcattttta tatgtggtat      1680
     acgttattat ggacaatatc gtttgctgaa tattttatac gagtaaaaaa gctgccgtac      1740
     gaattaatag tggtcggggc tcg                                              1763
//
ID   Mariner-9_DRh repbase;    DNA;    INV; 1663 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1663
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1403-1403 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. 28-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1663 BP; 522 A; 288 C; 313 G; 537 T; 3 other;
     cagttgcggt caaaataata gtagtgccgg ttaagcaaca agttttttct caatattttc        60
     tccatttctt caaaaatcca attcattttt ttcacattag taactgtaat taactgctct       120
     ataataatgt gtagttattt tcgattctcg cctttatttt tattcttttc gccttcattt       180
     gcaaagattc acgtgttaga ctcagtcaat aataatagta gtgccagaga aattagcaag       240
     aataatttag tttacttaat ttgaaaagag ttttgtggtg gttaataata gttttgggtg       300
     ttatttaaca gtcccaagca ttttgagatt tttctttaac attcagtcct gactacatgg       360
     ggcgtggcaa acactgtact gccgagaggc gagatctgat taaaaaattg atttctgctg       420
     agaagactta tgtcgaagtg caaaatatta ttggctggtc ttctacaatg gttagaaatg       480
     ctaaaaaata tgagccagca aatgaaacgc ctggtcgacc caagatattg gacaaaaggt       540
     cagtggatcg cttagaaaga cagtcaagaa tcgaaccctt cgcgtctgct gcatccctaa       600
     aaaaacttgt aacttaaatg caagtttgga aacaataaga agacgactca gagataataa       660
     cctcatttca agaagtccaa gaaaagtgcc gtcactcaca aaaaaacatg ccgcgaaacg       720
     tttaaagttt gcaagacggc wcttgaattg gccattggag aagtggagga atattttgtg       780
     gtcgtatgag tctaaaatag ttttgtttgg aggccgtggc actcggcagt ttattagacg       840
     accaccctta tgtgtttttt ctccgaaata taccttaaaa atcggtaagg cacggtggtt       900
     catcaattat gatttgggca agcttttcat actatggagt tgggccagta tattggatca       960
     aaaccatcat ggaccgttat tctatacgtc aaaattttaa acgaagtgat gcttccacat      1020
     gmtkccgagg acatgccact tgtttggacg ttccaacagg acaacgatcc caaacatacg      1080
     agtaaactcg ccaaagagtg gttcgcggcc aatcaagtca gtgtcatgga gtggcctgca      1140
     cattcacccg atcttaatcc aattgaaaat ttatggtgtg acgtgaagag agcagtctcg      1200
     gaaataggac caaagaataa cattcaactt tgggaagctg tacaaaggtc ttggagctct      1260
     attccagtga agagatgcca aaatttagtt gattccatgc ataagcgctg tgcgtccgtt      1320
     attgcaaaca aaggatatgc aactaaatac taaaataatc cttaaatata ggtctattat      1380
     atacatttaa tcatttaatc tttaaacgtt ttttttggcc gtggtgaatt tttaaaagtt      1440
     tcactactat tattttgaac gaacaaattt ttgtaatatt ccacattttt attttttttt      1500
     aaaaatctta tgaattatcc taagttgttt tgtattatta ttacctacta ttagctgagt      1560
     ttcaatgaaa attaaaaaca ttttgcaaaa acgtttcaaa agttattttt ttgcggtttc      1620
     tagataacct ctgcgggcac tactattatt ttgaccgcag ctg                        1663
//
ID   Mariner-9_DSuz repbase;    DNA;    INV; 1629 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-9_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1629
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 135-135 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           90..1343
FT                 /product="Mariner-9_DSuz_1p"
FT                 /translation="MIKEKSKSITVNMQNISSIVFCFFVLLIRMPASNDFS
FT                 SGIYILSLRDLVVSRQAESVVQEYYYKFSLILDKVDFLIFKMVKKSELSAK
FT                 IRSEIVIKYNLGVSVINIAEEYNLSRQTIYYQINKYKKFNDVINVHRKGRN
FT                 RKTTAHEDRLIVRAFKKDPLKTPKAVSLEWDETASTSISERTIRRRLIEAD
FT                 MKTYIAKPIPFITPKNKLKRLEFAKRYITKPASFWRNVLWTDESSFEFHAS
FT                 QKKVFVRINKNYRKKNAPVCQRVSHGGGSVMFWGSVSYNGVGDLVPIDGSM
FT                 NQNRYLETLNNYAFPSGDRLIGKEFILQQDNAPCHKARMITRFLRDVGVET
FT                 LDWPPQSPDLNIIENVWSLIKRERSTDLTRTKAETVTEVTMNWKEVPLKYL
FT                 QTLVDSVPNRLQKVIDTKGGYIFY"
XX
SQ   Sequence 1629 BP; 578 A; 256 C; 299 G; 496 T; 0 other;
     cactggtcgg catatatatt ttgtcatagt attcatttga ctatcagact cttgatctaa        60
     gtaccggtgc attgttcgaa ctgaaaatta tgataaaaga gaagagcaaa tcaataactg       120
     ttaatatgca aaatatttcg tcaattgtgt tttgtttttt cgttctgctg ataagaatgc       180
     cagcaagcaa cgattttagc agtggcatat atattttgtc attgcgtgat ttagttgttt       240
     ctaggcaagc tgaaagtgtt gttcaagaat attattacaa gttttcatta atattggata       300
     aagtcgattt tttaatattt aaaatggtta aaaaatctga gctgagcgcc aaaataagat       360
     cggaaattgt gatcaaatat aacttgggtg tttctgtaat aaacatcgct gaggaatata       420
     atttgtctcg tcagaccatt tattatcaaa tcaataaata taaaaaattt aatgatgtga       480
     tcaatgttca ccgtaaaggc agaaatcgaa agactacagc tcatgaagac cgtcttatcg       540
     tccgtgcttt taagaaggac cctttaaaaa caccaaaggc tgtgtcctta gagtgggatg       600
     agactgcatc cacttccata agtgagagaa caatacgcag gcgtttgatt gaagcagata       660
     tgaaaacata tattgcaaaa ccaattcctt ttatcacccc taaaaataaa ctaaagcgtt       720
     tggagttcgc gaaaagatac atcaccaagc ccgcttcatt ttggcgtaat gtcctgtgga       780
     cagatgagag tagttttgaa ttccacgcat ctcaaaagaa agtttttgta agaattaaca       840
     agaattaccg taaaaaaaat gctcctgtgt gtcaaagagt aagtcatggg ggtggaagcg       900
     taatgttctg gggttcagtt tcatataatg gtgtgggaga cttggttccc atagacggat       960
     ccatgaatca gaaccgatat ttagaaactt taaacaatta tgcatttccc tccggcgaca      1020
     gattaatagg aaaagaattt attctccaac aggacaacgc tccttgccat aaggctagaa      1080
     tgattactag gtttttaaga gatgtcgggg tggaaactct cgattggccg ccacaaagtc      1140
     ctgatttaaa cattattgaa aatgtgtggt cgctaataaa gcgagaaaga agcactgatc      1200
     tgaccaggac aaaagcagaa accgtcactg aggttacaat gaattggaaa gaggttccct      1260
     taaaatacct tcaaaccttg gtcgattccg ttccgaatcg cctgcaaaag gtcatagaca      1320
     ccaaaggagg gtatattttt tattaatttc cagtttcaaa taaatttata aaacaaatta      1380
     gttaattaag atgaaaaaag aaattttgtc aaaatactta tgccacccat gaaatgactt      1440
     agtttttagt tttaattcaa ttaaaaatct aaatgaatgt taaaaatgaa aatttgttat      1500
     atttataatt taatacaatg taactaaatg aattatgtac aatccataca tttttttata      1560
     tttaaaataa aaaaaaattt aaacagaaac tgaggcatcg ccatgacaaa atatatatgc      1620
     cgaccagtg                                                              1629
//
ID   Mariner-9_FoCa repbase;    DNA;    INV; 1650 BP.
XX
AC   .
XX
DT   12-NOV-2019 (Rel. 24.12, Created)
DT   12-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-9_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1650
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2477-2477 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. TA TSDs. 219-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1386
FT                 /product="Mariner-9_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MRGKELSLEQRGKIISLHQKGLGYIKISQKTKFKVPA
FT                 IQRIIQKWKSTGSVANKRRTGRKRKTTPRIDRQILKKINSNRFLSAPKIVE
FT                 EIQSQHGVSISNQTVRNRIKEQGYKGAVARKKPFISKRNQLKRLQWAKDHA
FT                 AWTTDDWKRVLWTDESKFNMFGTDGVTTVWRKVGESLKPNCLRKTVKHGGG
FT                 SIMVWGSMSTNGVGKLHFIDGIMNKDVYQSILQKNLLPSVRKLRIRGDYFF
FT                 QQDNDPKHTAKTTKEWFAKNQIKVLPWAAQSPDLNPIEHLWAELERKIANR
FT                 NPSNKEDLKRILAEAWEDIDPDFTKKLVDSMPRRIQAVIEAKGGPTRY"
XX
SQ   Sequence 1650 BP; 579 A; 311 C; 336 G; 424 T; 0 other;
     cagtagctgc aataagttag gctatggtat gaacaggcta agttcaggtc catttatttt        60
     gtgcaagtta agctaccaaa tacatataat acatatattt tgaaggaaat ttatcaagga       120
     atcggaatat gagaacgatt ttcaaaaatc tcaaaaactg gctgcacaat tttaggaggg       180
     agcgggaaat ctgtaaatcg gaggcaaaaa aagttagcat atggttaagg atttttcaat       240
     gtggagttgg attcttagat tttcgtctat catttttttt ggtaagtgaa ttcccaacta       300
     tatatactgt aatacaacta ccagctaaat caataattca ttttgtgaaa ctaaaattag       360
     gtgaaaatgc gaggaaaaga gttatcgctg gagcaacggg ggaaaattat ttccttgcat       420
     cagaagggtc tcggatacat aaaaatctct cagaaaacaa aattcaaggt gccagctatt       480
     caaagaataa tccagaaatg gaaatcaaca ggatctgtgg caaataaacg gcgaaccgga       540
     cgtaagagga aaacgactcc gcggattgat cgacaaattt taaagaaaat aaattccaac       600
     cgatttttat ctgcaccaaa aattgttgaa gaaattcaaa gccaacacgg ggtctccatt       660
     tctaaccaaa cagtccgaaa tcgcatcaaa gaacaaggtt ataagggtgc tgtcgcgcgg       720
     aagaaacctt tcatctccaa gcgcaatcaa cttaagcggc tccagtgggc aaaagatcac       780
     gcagcgtgga ccactgatga ttggaaacgc gttctatgga ctgatgaaag caagttcaac       840
     atgttcggga ccgacggtgt gaccacagtc tggcgtaagg tcggcgaaag tcttaagccc       900
     aactgcctaa gaaaaaccgt caaacacgga ggtggttcta ttatggtatg ggggtcaatg       960
     agtacaaatg gtgtaggaaa attgcatttc attgacggaa ttatgaacaa ggatgtctac      1020
     caatccatcc tacagaaaaa tttacttcca tcagtccgga aattaagaat cagaggggac      1080
     tatttctttc aacaggacaa cgatcccaaa catacggcca aaacaaccaa ggaatggttc      1140
     gccaaaaatc aaataaaagt tcttccatgg gctgcccaat caccggatct taatcccata      1200
     gaacatttat gggcagaatt ggagagaaaa attgcaaatc ggaatcctag caacaaggaa      1260
     gacttaaaac ggatcctggc agaagcatgg gaagatattg acccagattt caccaagaaa      1320
     ttagtggact ctatgccacg acgtatacaa gcagtaattg aagccaaggg aggaccaaca      1380
     cgttactagg ttatgatttt acaaaatagc agatcaaaaa tcataaccat gtgctaactt      1440
     tttttgcatc caattcacag gtttccctct tcctcgcagg attggagtcc aagctttaga      1500
     gatttttgaa aatcgttctc ataatccgat tccttgataa atttccttca aaatatatgt      1560
     attatatgta tttggtagct taacttgcac aaaataaagg aacatgaact tagcttgtcc      1620
     ataccatagc ctaacttact gtagctactg                                       1650
//
ID   Mariner-9_HSal repbase;    DNA;    INV; 1264 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner-9_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1264
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 849-849 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..1138
FT                 /product="Mariner-9_HSal_1p"
FT                 /translation="MEDYKITQEMKRHAVIVAICAKHTDLEISNFLNCARS
FT                 FVHKVRRELEASAGDVETVAKRKKHEERSDTTRNTQFVQQVQEIVDESPSK
FT                 SMRAIARDLNVSESLIRRVVHEDLRYTSYVMRRGQFMSAQTREQRLIRGKR
FT                 LLNKLKHPEVPNMLWFFSDEKNFDQDQKINRRNDRWLCSHPTEVPRVMHTK
FT                 FPATVMVLGVVSNEGHVMPPHFFRQGLRVNAAAYIEVLETVVKPWIDSVRG
FT                 DRPYIFQQDSAPSHKAMTTQDWMTENFYDHITPNLWPPSSPDLNPLDYYVW
FT                 GVVERETNKHPHNNISSLKDAITTTMIKMNKEHLIRACNRFRPRIESVIAA
FT                 NGDFIE"
XX
SQ   Sequence 1264 BP; 390 A; 268 C; 269 G; 337 T; 0 other;
     cagggtgcgt acggtatttg aggacactca tatatgtgaa tgtaatttct ggagaacaat        60
     tttgtttgtt ttttttcttg tcagatcatc aatggaggac tataaaataa cgcaagaaat       120
     gaagagacat gcagttatcg tcgctatatg cgcgaaacac accgatttag aaatctccaa       180
     ttttctcaat tgcgcccgat cattcgtaca taaggttcgt cgtgaattgg aagcatcagc       240
     tggcgatgta gaaactgttg caaaacgcaa aaaacatgag gaacgttcgg acactactag       300
     aaatacacaa tttgtccaac aagtgcaaga gatcgttgac gaaagccctt caaagtccat       360
     gagggccatt gcgagggacc tgaatgtctc tgagagccta atccgtcgag ttgtccacga       420
     agacctccgc tatacgtcct acgttatgcg cagaggacag tttatgtcgg cacaaactcg       480
     ggaacagaga cttatccgag gaaaacgtct tttgaacaag cttaagcacc ctgaagttcc       540
     taacatgttg tggttttttt ctgacgaaaa aaatttcgac caagaccaaa aaatcaatcg       600
     gagaaatgac aggtggttat gctcacatcc tacagaggtt ccccgtgtta tgcacacgaa       660
     gtttccagca actgtcatgg ttttaggagt tgtgagcaac gaaggacatg ttatgccacc       720
     ccacttcttt cgtcaggggc ttcgggtgaa tgctgccgcc tacatcgagg ttttagaaac       780
     agttgtgaaa ccctggattg atagtgtacg tggggacaga ccatacatat tccagcaaga       840
     ctctgctcct tcacacaaag ccatgacgac acaagattgg atgaccgaaa atttctatga       900
     ccacattacc ccaaacttat ggccacctag ctccccagac cttaatcccc tggattatta       960
     cgtatggggc gtagttgagc gggagaccaa taaacatcct cataataata tttcatcact      1020
     gaaggatgct ataacaacaa caatgatcaa aatgaacaaa gagcatttga ttcgggcatg      1080
     caatcgtttc cgaccccgga ttgagtccgt tattgccgct aatggggatt ttattgagta      1140
     attgtatagt ctaggagtca attaacgtcg tgtaaaaatt tcatggaatt ataataaatt      1200
     ttgcaaaaaa tatgaacaaa ttagttttaa tgtcaatttg tcctcaaata ccgtacgcac      1260
     cctg                                                                   1264
//
ID   Mariner-9_LHu repbase;    DNA;    INV; 1288 BP.
XX
AC   .
XX
DT   09-APR-2012 (Rel. 19.02, Created)
DT   09-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1288
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 367-367 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 99% identical to the consensus. 32bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           168..1208
FT                 /product="Mariner-9_LHu_1p"
FT                 /translation="MNMSSFVPNKEHLRHSLLFLFHQKKKAAEAHRLLVET
FT                 YGEHAPVIRTCETWFRQFKSGDFDLKDNEHPGAVKRFEDEDLQVLLDEDPT
FT                 QSQQILAEKLNVSRVAICQRLKAMGKIQKYGKWVPHALNDRQMEHRKTICE
FT                 MLLQRFERKSFLHRIVTGDEKWIFFENPKRKRSWLSPGEAAPSTAKPNRFG
FT                 RKTMLCVWWDQDGVVYHELLKPGETVNTDRYRQQMINLNHALIVKRPEWAR
FT                 RHGKVILQHDNAPSHTARSVKDTLKALNWEILSHPPYSPDLAPSDFHLFAS
FT                 MGHSLAEQHFVNFEEVEKWLVEWFSSKEKKFFWNGIHNLPERWTKCVESNG
FT                 QYFE"
XX
SQ   Sequence 1288 BP; 402 A; 248 C; 283 G; 355 T; 0 other;
     ccaggagtgt aagttgaagt ttgccggttt ttacagtagg tgttgctagc aggatgtagg        60
     catttctatg atttgttata tacacgattg ttttctattg acattaacct ccaaaaacac       120
     ctaagtctca ttctgtcaaa ataatagcgt catagtcgtt taaatcaatg aatatgtcga       180
     gtttcgttcc aaataaagag catttgcggc attcgttgct tttcttattt catcaaaaga       240
     aaaaagcagc tgaagcacat cgtttgctag tagaaactta tggtgaacat gctccagtga       300
     ttagaacatg tgagacatgg tttcgtcaat ttaaaagtgg agatttcgat ttgaaagaca       360
     atgaacatcc tggtgcagtg aaaaggtttg aagacgagga tttgcaggtg ttgttggatg       420
     aagacccaac ccaatcacaa caaatattgg cagaaaaact taatgtgtcc cgagtagcaa       480
     tttgccaacg tttaaaagcc atgggaaaaa tccagaagta tggaaaatgg gtgccacacg       540
     cattgaacga caggcaaatg gaacatcgaa aaaccatttg tgaaatgctg cttcaacggt       600
     tcgaaaggaa gtcttttttg catcggattg tcacgggtga cgagaagtgg attttttttg       660
     agaacccgaa gcgaaaaaga tcatggcttt cacctggtga agccgctcca tccactgcaa       720
     agcccaatcg ctttggccgt aagacaatgc tctgtgtttg gtgggaccag gatggtgtgg       780
     tgtaccacga actattaaaa cctggtgaaa cggtaaatac ggatcgctac cgacaacaaa       840
     tgatcaattt gaatcatgcg ttgatcgtta aacgaccgga atgggcccga agacatggca       900
     aagttatttt gcaacatgac aacgcaccgt ctcataccgc tagatccgtg aaggacacat       960
     taaaagcact taattgggaa atattatcgc acccgccgta ctctccagac ctcgccccgt      1020
     ccgacttcca ccttttcgca tcgatggggc actcacttgc agagcagcac ttcgtcaatt      1080
     ttgaagaagt tgaaaaatgg ctcgtcgaat ggttttcctc gaaagagaaa aagttttttt      1140
     ggaatggtat ccataatttg cctgaaagat ggacgaaatg tgtagaatca aatggtcaat      1200
     actttgaata aaaatatttt gagattccct tgaaaattat gtgttttttt taacgaaaaa      1260
     accggcaaac ttcaacttac actcctgg                                         1288
//
ID   Mariner-9_LMi repbase;    DNA;    INV; 1895 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.11, Created)
DT   28-APR-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1895
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3012-3012 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(362..859,802..1428)
FT                 /product="Mariner-9_LMi_1p"
FT                 /translation="MDRLPIAEKVDMVFMYGYCDQNAQRACAMYVDRYPGR
FT                 HHPSVRTFRRIVTLFKETGSVQPQVKRQPRPATNDDAQVSVLAAVAANPHI
FT                 SSRQIERESGISKTSVLRILHQHKFHPYHISMHQDLHGEDFERRVQFCHWA
FT                 QNKLRDDNRFFHAFCLVTKRHSQTEVTQIFSRVLFSDEASFTNRGNVNRHN
FT                 MHYWATENPRWLRQVEHQRPWRVNVWCGIMGGRIIGPYFIDGNLNGAMYAD
FT                 FLRNVLPILLQDVSLHDRMAMYFQHDGCPAHGSRAVEAVLNGIFNDRWIGR
FT                 RSTIPWPARSPDLTSPDFFLWGKLKDICYRDSPTTPENMRQRIVNACENIT
FT                 EGELLAVERNFVTRIAKCIEVEGHHFEHLLKS"
XX
SQ   Sequence 1895 BP; 564 A; 372 C; 413 G; 546 T; 0 other;
     cagggtggtc cattgatagt gaccgggcca aatatctcac gaaataagca tcaaacgaaa        60
     aaactacaaa gaacaaaact tttctagctt gaagggggaa aacagatggc gctatggttg       120
     gcccgctaga tggcgctgcc ataggtcaaa cggatatcaa ctgcattttt taaataggta       180
     cccccatttt tattacatat tcgtctagta cgtaaataaa tatgaatgtt ttatttggaa       240
     cacttttttc gctttgtgat agatggcgct gtaatagtca caaacgtata agtacgtggt       300
     atcgcgtaac atttcgccag tgcggacggt atttgcttcg tgatacatta ctcgtgttaa       360
     aatggaccgt ttaccaattg cagaaaaggt cgatatggta tttatgtatg gctattgtga       420
     tcaaaatgcc caacgggcct gtgctatgta tgttgatcgt tatcctggaa gacatcatcc       480
     aagtgtccgg acctttcgtc ggatagttac gttatttaaa gagacaggaa gtgttcagcc       540
     acaagtgaaa cgtcaaccac gacctgcaac aaatgatgat gcccaagtaa gtgttttagc       600
     tgcagttgcg gctaatccgc acatcagtag cagacaaatt gagcgagaat cgggaatctc       660
     aaaaacgtcg gtgttgagaa ttctacatca acataaattt cacccgtacc atatttctat       720
     gcaccaggat ttgcatggcg aagactttga acgtcgtgta cagttttgcc actgggcaca       780
     aaataaatta cgggacgata acagattttt tcacgcgttc tgtttagtga cgaagcgtca       840
     ttcacaaaca gaggtaacgt aaaccggcat aatatgcact attgggcaac ggaaaatcca       900
     cgatggctgc gacaagtgga acatcagcga ccttggcggg ttaatgtatg gtgcggcatt       960
     atgggaggaa ggataattgg cccctatttt atcgatggca atctaaatgg tgcaatgtat      1020
     gctgatttct tacgtaatgt tctaccgatt ttactacaag atgtttcact gcatgacaga      1080
     atggcgatgt actttcaaca tgatggatgt ccggcacatg gctcgcgtgc agttgaagcg      1140
     gtcttaaatg gaatatttaa tgacaggtgg attggtcgta gaagcaccat accatggccc      1200
     gcacgttcac cggatcttac atccccggat ttctttctgt ggggaaaatt gaaggatatt      1260
     tgttatcgtg attcaccgac aacgcctgaa aacatgcgtc agcgcattgt caatgcatgt      1320
     gagaacatta ctgaaggcga actactcgct gttgagagga atttcgttac gcgtattgcc      1380
     aaatgcattg aagttgaagg acatcatttt gagcatttat tgaagtcatg aggtaattac      1440
     aggtaatcac gcagtaacag catgcgttct cataatgtat gataatttca caaaagtaca      1500
     tgtatcacat tggaacaacc gaaataaagt tcaaacgtac ctacgttctg tgttttaatt      1560
     taaaaaaacc tacctgttac ccactgttcg tctaaaattg tgagcaatat gtttgtgaat      1620
     attacagcgc catctatcac aaagcgacaa aagtgttcca aataaaacat tcatatttat      1680
     ttacgtacta gacgaatatg taataaaaat ggggtaccta tttaaaaaaa tgcagttgat      1740
     atccgtttga cctatggcag cgccatctag cgggccaacc atagcgccat ctgttttccc      1800
     ccttcaagct agaaaagttt tgttctttgt agttttttcg tttgatgctt atttcgtgag      1860
     atatttggcc cggtcactat caatggacca ccctg                                 1895
//
ID   Mariner-9_MMo repbase;    DNA;    INV; 1268 BP.
XX
AC   .
XX
DT   27-AUG-2012 (Rel. 26.11, Created)
DT   27-AUG-2012 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Mengenilla moldrzyki genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_MMo.
XX
OS   Mengenilla moldrzyki
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Strepsiptera; Mengenillidia;
OC   Mengenillidae; Mengenilla.
XX
RN   [1]
RP   1-1268
RA   Jurka J.;
RT   "DNA transposons from the Mengenilla moldrzyki genome.";
RL   Repbase Reports 21(11), 6271-6271 (2021).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1077
FT                 /product="Mariner-9_MMo_1p"
FT                 /translation="MRNMELTREHMRAMIYYDFKVGLNEQQSFERLQSAFG
FT                 DESPSRATVFRWFNEFKRGRGSLGDEKRIGRPCSSVTAENIDRVRRIIEDP
FT                 RCTYQMIESTLGVGSATVNSILHDHLHMKKVVSRWVPHKLNDFQKAERVRI
FT                 AQETLEMLNNGGHRILSKIVTGDETYISFFDVPTRQESRVWVHEDDPTPTI
FT                 VKRQRSVKKVMYAVFFRSTGLIKAIKLDNQRTVTANWYTTKCLPIVLESVK
FT                 IRGLMLHHDNVSSXTAQQTIDFLRDNKVKIIPHPPYSPDLAMCDFWLFFNL
FT                 KKDTWSVFHNRKGD"
XX
SQ   Sequence 1268 BP; 417 A; 205 C; 262 G; 383 T; 1 other;
     taatacgagg gtcacgctat atattttgag atatcacaaa actataagaa tgaataacgg        60
     caacactgta ttttgataaa ctacaaacct tgattagtaa aaatcaaaat ttagtttggt       120
     cgctttttct acggtgtacg aatagtagag attaattgca tgcgaaacat ggaattgact       180
     agagagcata tgcgtgcaat gatttattat gattttaaag tgggtttaaa tgagcaacaa       240
     agttttgaac ggttacaatc tgcattcggt gatgaaagcc catcacgggc aactgtgttt       300
     cgctggttta atgagtttaa aaggggacga ggatcgcttg gtgatgagaa acgtattggt       360
     agaccatgtt cgtcagtaac tgctgaaaat attgatcgtg tgcgacgtat aatagaagac       420
     ccaagatgta cataccaaat gattgagtca actcttggtg ttggatccgc aacagtgaat       480
     tcaatattac atgatcatct tcatatgaaa aaagttgtta gtcgttgggt accccataag       540
     ttaaatgatt ttcaaaaagc agagcgagta agaatagcgc aagaaacgct ggaaatgttg       600
     aataatggtg gtcatcgtat attatctaaa attgtaacag gtgatgaaac atacatttct       660
     ttttttgatg ttcctactcg acaagaaagc cgtgtgtggg tccatgaaga tgatccgact       720
     cccacaatag tgaaaaggca aaggtcggtc aagaaagtta tgtatgcggt tttctttcgt       780
     agtacaggat taataaaagc aattaagctt gacaatcaac gtacagttac agctaactgg       840
     tacaccacaa aatgtttgcc tatcgtgctt gagtcagtca aaattcgcgg gttaatgtta       900
     catcatgata acgtatcctc asacacagca cagcaaacaa ttgacttttt gcgtgataat       960
     aaggtgaaaa tcattccaca tccaccttat tcaccagatt tggctatgtg tgacttctgg      1020
     ttgtttttta atctaaaaaa agacacgtgg tcggtatttc acaacagaaa aggagattga      1080
     tgaagcaatt catgactttt tcaacagtat tccaaaaaag gactggcttc aggctttcca      1140
     ttagtggagg caacgattac aaaagtgcat tgatgctagt ggagattact ttgaacatta      1200
     ataaatattt ttacaccata ctgcgttttt ttttgtatct cgaaatatat agcgtggccc      1260
     tcgtatta                                                               1268
//
ID   Mariner-9_PBa repbase;    DNA;    INV; 1318 BP.
XX
AC   .
XX
DT   18-APR-2012 (Rel. 19.03, Created)
DT   18-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1318
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 622-622 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           210..1091
FT                 /product="Mariner-9_PBa_1p"
FT                 /translation="MEQRICIKFCFKNGIKCSIALEMLNVAFGESSMNKTS
FT                 VYKWYKRFQEGREDVEDDERPGRPSTSTTDDNVEKVKKMIIDNRRITIREV
FT                 ADDVDISFGSCQAIFSDVLGMKRVAAKFVPKLLNFDQKQCRMNVAQELLNE
FT                 VHDDPELLKRVITGDETWVYGYDVETKAQSSQWKLPEEPRPKKARQVRSNV
FT                 KVLLTVFFDFNGVVYHEFLPPGRTVNKEYYLEVLRRLREAIRRKRPDLWRN
FT                 NSWQLHHDNAPAHTSLLVREFLAKNNTVMMPQPPYSPDMVPCDFFLFPKLK
FT                 RI"
XX
SQ   Sequence 1318 BP; 397 A; 249 C; 306 G; 366 T; 0 other;
     cgaggtttga taaaaaaata cgcggaattg tttaatttcg cgggctgtat acgtccaatt        60
     gtcacaattt tttttgttgt gttggtatac ttgtccctga cgtattttga cattggtagc       120
     catattggat gcttacttta ttgttcgctg tcggtcgaaa aggttacacg tgttttggta       180
     tgctcggcga tttttaactt gtggaaaaaa tggaacaaag aatttgcatt aaattttgct       240
     ttaagaatgg aataaagtgc agcatcgcat tggaaatgtt gaatgttgct tttggcgaat       300
     cttctatgaa taaaacaagc gtttacaagt ggtacaaacg tttccaagag ggccgtgaag       360
     acgttgaaga tgacgagcgc cctggacgcc ccagtacatc aacaaccgat gacaacgtcg       420
     aaaaagtgaa gaaaatgatt attgacaatc gccgaatcac tatcagagag gttgctgatg       480
     atgttgacat atcatttggc tcatgccaag caattttttc ggatgttttg ggcatgaaac       540
     gtgtggcagc aaaatttgtt ccgaaattat tgaatttcga ccaaaagcag tgccgaatga       600
     acgttgctca ggagttgctg aatgaagttc acgacgatcc agaactgctc aaacgggtca       660
     taactggtga tgaaacatgg gtgtatgggt atgacgtcga aactaaggcc caatcgtccc       720
     aatggaagct tcctgaagag ccaagaccga aaaaagctcg tcaagttcga tcgaatgtga       780
     aggttctgct cactgtgttc ttcgatttca acggcgtagt gtatcatgag ttcttgccac       840
     caggtcgtac ggtcaataag gagtactatc tggaagttct acgccgtttg cgtgaagcaa       900
     tccgaagaaa acgcccggat ttgtggcgaa acaattcatg gcaattgcac cacgataatg       960
     cacctgctca cacttcactg cttgttcgtg aatttttggc caaaaacaac accgttatga      1020
     tgcctcagcc tccgtattcg ccggacatgg tcccctgtga cttcttccta ttcccgaagc      1080
     tgaaaagaat ctgaaacatg aaaggacgac gttttgccaa cattgaagag ataaagacag      1140
     aatcgctgaa ggaagctaaa cgccatcgaa aattgcgttc cagaagtgct tcgaagattg      1200
     gaaaaagcgc tggcacaaat atattatatc tcatggggag tactttgaag gggacaaaat      1260
     taatatcgat gaataaataa agattttttg agaaaaacga aaattccgcg tatttttt        1318
//
ID   Mariner-9_RPr repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3255-3255 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           263..1255
FT                 /product="Mariner-9_RPr_1p"
FT                 /translation="MLIKAYGESAMSKTRIYEWYKRFQDGRENVEDDERPG
FT                 RPSTSTTDENVKKVKEMVMNDRRITIREVADDVAISIGSCHEIFSDVLGMK
FT                 RVAAKFVPKLLNFEQKQRRMEVAQESLNEVDNDADLLKRVITGDETWVYGY
FT                 DVETKAQSSQWRHSGSPRPKKARQVRSNVKVMLTVFFDFNGIVHHEFLPQG
FT                 QTINKEYYLQVQRRLREAIRKKRPDLWQNNSWILHHDNAPAHTSLLVREFL
FT                 AKNKTLTMPQPPYSPDMAPCDFFLFPNIKRTLKGRRFTSIDDIKSESLKEL
FT                 KAITKIEFQKCFEDWKKRWHKCIVCEGDYFEGDNINVDE"
XX
SQ   Sequence 1312 BP; 431 A; 224 C; 289 G; 368 T; 0 other;
     cgaggtgtgt tcaaaaagta acgggaattt ttaaatttcg cgggtttgga gagtctgatt        60
     gtaaaatttt tttttttatt atgttggtac acatgcccct gaagtacgat aaaattttca       120
     gtaatattca ttgtttactt cttaagtggc agccgttaag gttagacgtg tttttcgagc       180
     ttggcgattt ttgtttgtta aaaaaaatgg atcaaagaat ttgtattaaa ttttgcgtaa       240
     aaaatgaaat aaagtgtgtg aaatgttaat aaaggcatat ggtgagtctg ctatgagtaa       300
     aacaaggatt tacgagtggt ataagcgttt ccaagatggc cgcgaaaacg ttgaagatga       360
     cgaacgacct ggacgtccaa gcacatcaac aaccgatgaa aacgtgaaaa aagtgaaaga       420
     aatggttatg aacgatcgcc gaatcacaat cagagaagtc gctgatgatg ttgccatatc       480
     aattggctca tgccatgaaa ttttttcgga tgttttgggt atgaaacgtg tggcagcaaa       540
     atttgttcca aaattgttga atttcgaaca aaaacagcgg agaatggaag ttgctcaaga       600
     gtcactcaat gaagtcgaca acgatgcgga tctactgaaa cgtgttataa caggtgacga       660
     aacatgggtt tacggatatg atgtcgaaac taaggctcaa tcgtcccagt ggaggcattc       720
     tggatcgcca agaccgaaaa aggctcgaca agtgcggtcg aatgtgaagg ttatgctcac       780
     tgtgttcttc gattttaatg gcatagtgca tcatgaattc ttgccacaag gtcaaacaat       840
     caataaggag tactacctac aagttcaacg ccgtttgcgt gaagcaatcc gaaaaaaacg       900
     cccggatttg tggcaaaaca attcatggat tttgcaccac gataatgcac ctgctcacac       960
     ttcattgctt gttcgtgaat ttttggccaa aaacaaaact ttaacgatgc cccagcctcc      1020
     atattcgcca gacatggctc catgtgactt ttttctattt ccaaacataa agagaacatt      1080
     aaaaggccgt cgttttacaa gcatagatga cattaaaagc gaatcgctga aagagctgaa      1140
     agctatcaca aagatcgagt ttcagaagtg tttcgaggat tggaaaaagc gctggcacaa      1200
     gtgtattgta tgcgaagggg actactttga aggcgacaat attaatgtag atgaataaat      1260
     aaatattttt ttcaaaaaac gaaaattccc gttacttttt gaacacacct cg              1312
//
ID   Mariner-9_SIn repbase;    DNA;    INV; 1297 BP.
XX
AC   .
XX
DT   20-NOV-2011 (Rel. 19.02, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner-9_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1297
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 325-325 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. ~30bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           182..1117
FT                 /product="Mariner-9_SIn_1p"
FT                 /translation="MEKIEYRAVIKFLHLKGKKTQEIKNELDSVYGEASPS
FT                 FTTVKHWVAEYKRGRTSILDEERSGRPKIATTDEMVDLVHQTVMEDRRLTV
FT                 KDIAEACGISSERVHKILHQELDMRKLSARWVPRLLTIDQKRIRMDMSREC
FT                 LSLYQKNPAEFLRRMITVDETWVHYHTPETKQQSKQWIAVGEPTPKKAKVV
FT                 LSAGKVMATVFWDSRGIILIDYLAKGETINGEYYAALLDKLKAIIKKKRPH
FT                 LAKKKILFHQDNARVHTSMVAMSKLNELKFELLPHPPYSPDLAPSDFFLFP
FT                 NLKKFLGGKNISQMLRWKTL"
XX
SQ   Sequence 1297 BP; 402 A; 251 C; 299 G; 345 T; 0 other;
     tacgtgggcc atttgaaaag tttccggcct catcgacata aagtaactgt agagaaaaat        60
     ttctttcgcc gtccgataga tggtcttgac atatgtaaac cgtaaaaatt tgaagtcatt       120
     ctgatcatta ctttctctat ggcaatcttt caaagttgtc agctgacatt gtctgtcaac       180
     aatggagaaa attgagtatc gcgcagtgat aaaattcctt catttgaaag ggaaaaagac       240
     tcaggaaata aaaaatgagt tagactctgt atacggagaa gcctcccctt catttacaac       300
     ggtcaaacat tgggtggccg agtacaaacg tggtcgtacg agcattttag acgaggaacg       360
     ttccgggcgc ccgaaaatcg ctacaactga cgaaatggtc gatttagtgc atcaaactgt       420
     gatggaagat cgtcgattga ctgttaagga tattgctgag gcttgtggga tatcatctga       480
     acgggtgcac aagattttac atcaagaatt ggatatgaga aaattatccg cgcgctgggt       540
     gccgcgcttg ttgacgatcg accaaaagcg catacggatg gacatgtcgc gcgagtgtct       600
     tagcctgtat caaaaaaatc cagcggaatt tttgcggcga atgataaccg tcgatgaaac       660
     ctgggtacac taccatacgc ctgagaccaa acaacagtca aagcagtgga ttgcggtggg       720
     ggaaccaact ccgaagaagg caaaggtcgt tctctctgca ggaaaagtga tggcgacagt       780
     tttttgggat agccgtggaa taattcttat cgattacctt gcaaagggtg aaacaatcaa       840
     cggagagtac tacgctgcat tgctggataa attgaaggcc ataattaaga aaaaacgtcc       900
     gcatttggcc aagaaaaaaa tcctgtttca ccaggataac gctcgggttc acacgtccat       960
     ggtcgcaatg tcaaaattga acgaattgaa gtttgaattg cttccgcacc caccctattc      1020
     gccagatcta gctcccagcg actttttcct gtttccaaat ttgaaaaaat ttctcggggg      1080
     aaaaaatata agtcaaatgc tgaggtggaa aacgctgtaa accaatattt ttcaggttta      1140
     gacaatcaat ttttttctga cggtttaaaa gtatgggaga aacgttggac caaatgtatc      1200
     gagttgcatg gagactacgt cgagaaataa attttgtttt gcttcgaaat atgtgttttt      1260
     cttaaaaagg ccggaaactt ttcaaatagc cctcgta                               1297
//
ID   Mariner-N10_ACe repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-511
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 533-533 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 511 BP; 158 A; 110 C; 97 G; 145 T; 1 other;
     cgagggtcgt ttgaaaagtt ttgagcctca acatgaagat ggcattactc gtcaaaacca        60
     ttctggtact acaatcgtac atgttttgca agatacctgt gaaaattgta gccattktgg       120
     acgctcagtt gttgtttgac agtcatttgt gccagtcgat gtcagtgttt ttgtaaaaat       180
     ggaaaaaatc gaatatcgac gatcgccata acaaaaattt acgaattgcg gttcgaatta       240
     attaactacc caccgtattc accagatctg atccccaacg actttttcct gtttcctagg       300
     ctcaaagtta ggctcggagg acacagattt tcatcaaacg aaaacactga catcgactgg       360
     cacaaatgac tctcaaacaa caactgagcg tccaaaatgg ctacaatttt cacaggtatc       420
     ttgcaaaaca tgtacgattg tagtaccaga atggttttga cgagtaatgc catcttcatg       480
     ttgaggctca aaacttttca aacgaccctc g                                      511
//
ID   Mariner-N10_DTa repbase;    DNA;    INV; 974 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_DTa; PARIS.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-974
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6228-6228 (2021).
XX
DR   [1] (Consensus)
XX
CC   95% identical to the consensus.
XX
SQ   Sequence 974 BP; 337 A; 167 C; 151 G; 311 T; 8 other;
     cagtttgtca agtaattgtt tgcaaaaggs aaaatggcat agaaattcgt ktttggatgg        60
     gaaatgtaca agsaaatact wgattttttt cttttkgaat gttgtttatt aaactattat       120
     ctctccgatt gswtcmattt tcatttttca ccctaaaaca ccctaaaaaa caagaaaaac       180
     taaaaaattg caaatattcg gctgtcaatt atttgtttgc aaaatgcaag aaatgtgcgg       240
     gattcgaact tttttgtatt ggcaattccc caaaggaatg tccaataaaa gtcctgcatc       300
     attgttttat cagaaatgtg caggataata actcctgacg atggtcttag tttttgaacc       360
     atgtatacat gcactttgta agcaatctga acctcactgt tcctgctata tacaaaaagg       420
     ttagaatcct gcacatttct tgcaaaacaa tgatgcagga cttttcgttg gacattcctt       480
     taggggaatt gccaaaaata tcatcacatt ttgccgattt taccgctcaa aacgggagaa       540
     aactgcgtca aaaatgccaa caccatacaa atcacctgca aaagtttttt tggaagaaaa       600
     tccttaaaaa gtataattaa aaatgtcctt agacggtcaa ttccgggtcg tttaaatgca       660
     gggcaggcac cacgaggacc ccaccaaaaa ttagtacaat aactttagcc gttttcaagc       720
     tatagctaaa gtcaaataat tgtttgcatt ttgcaaacaa ttaattgaca gccgaatatt       780
     tgcaattttt tagtttttct tgttttttag ggtgaaaaat gaaaatgttt taatgcaatc       840
     ggaaagataa tagtttaata aacaacattc caaaagaaaa aaattaaaaa atctagtatt       900
     tgcttgtaca tttcccatct aaaaacgaat ttctatgcca ttttcccttt tgcaaacaat       960
     tacttgacaa actg                                                         974
//
ID   Mariner-N10_HSal repbase;    DNA;    INV; 867 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-867
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 964-964 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 867 BP; 285 A; 153 C; 150 G; 279 T; 0 other;
     cagggtggcc cacgtaaagt gttacaagtc cataacttta aaaatattta tcaaatcaaa        60
     aaattgttca taaggaagtt tcatgtattc gagaggcctc tctaactaca taaacgtaaa       120
     gtcgcccccg cttccccttt aaggggggac gggggtaact tcataatttt aaatggaacc       180
     ccctataaaa tgttgcatat ttggattcta cgggaaaaaa caagtaaatt ttatctgaaa       240
     catttgtttg gaaaatgctt ctatcaaaag ttataagcat ttaaaccttt agcgatttca       300
     ttcatgattg aactccattg acacaaagtt gcgttcgcga tacaacaaaa acaaaaaaga       360
     ccttagagta catacttgat gttaaccaaa agaaacataa ataaacacat ttatcgggga       420
     aacgtaaata cagatcacag acccgtttcc cgataaatgt gtttatttat gtttcttttg       480
     gttaacatca agtatgtact ctaaggtctt tttttgtttt tgttgtatcg cgaacgcaac       540
     tttgtgtcaa tggagttcaa tcatgaatga aatcgctaaa ggtttaaatg cttataactt       600
     ttgatagaag cattttccaa acaaatgttt cagataaaat ttacttgttt tttcccgtag       660
     aatccaaata tgcaacattt tatagggggt tccatttaaa attatgaagt tacccccgtc       720
     cccccttaaa ggggaagcgg gggcgacttt acgtttatgt agttagagag gcctctcgaa       780
     tacatgaaac ttccttacga acaatttttt gatttgataa atatttttaa agttatggac       840
     ttgtaacact ttacgtgggc caccctg                                           867
//
ID   Mariner-N10_LMi repbase;    DNA;    INV; 1150 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 20.01, Created)
DT   27-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1150
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 87-87 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1150 BP; 343 A; 234 C; 239 G; 334 T; 0 other;
     cagggtggtc catctgaagt ttcggatgag attatctcga aaactataca tcgggtaaaa        60
     atagtgggta agacaagttc gtaagctcaa agggggacat caaatgatac tacacgtgac       120
     ctccagcccc gcccccttgg gtggggcggg ggcaactttt aaatcttaaa tggaaacccc       180
     cattttttat tgcagattcg gattctccat aaaaaagtaa tcaagttttg tcgaaaaata       240
     ttttaaacca ttgacagatg gcgctgaaat cgagaaaaaa gtaaaattgg ggaagaactc       300
     cgatttattt agaatgatcc gagaaggacg catcaaatcg atacaaaatg tgcaccaatt       360
     ctttcattac gccaaattaa gctatttttt ttacaaaatg tatcctaccc gccacagttt       420
     ttgatggagg gaggcggaat ggtattaaaa tctcgttagg gaactcttca caattgcatt       480
     actcacccga ctgtggcgct accgtggcca aactgcgaac tatggctcag tataaaggcg       540
     gtgcaatgcg atcagacttc actttcagat tgtgaaccgt aaaatcaact gacgaaagta       600
     aattattctt tagcaaaaca tggctcacta tcctcataca gaggttgtgt tgtggctaag       660
     tcggcgggtg agtaatgcaa ttgtgaagag ttccctaacg agattttaat accattccgc       720
     ctccctccat caaaaactgt ggcgggtagg atacattttg taaaaaaaaa gcttaatttg       780
     gcgtaatgaa agaattggtg cacattttgt atcgatttga tgcgtccttc tcggatcatt       840
     ctaaataaat cggagttctt ccccaatttt acttttttct cgatttcagc gccatctgtc       900
     aatggtttaa aaatgtttca gacaaaactt gattactttt ttatggagaa tccgaatctg       960
     caataaaatg gggtttcatt taagatttaa aagttgaccc ccaccccacc caagggggcg      1020
     ggggctggag gtcacgtgta gtatcatttg atgtccccct ttgagcttac gaacttgtct      1080
     tacccactat ttttacccga tgtatagttt tcgagataat ctcatccgaa acttcagatg      1140
     gaccaccctg                                                             1150
//
ID   Mariner-N10_RPr repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1637
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3291-3291 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1637 BP; 536 A; 278 C; 296 G; 526 T; 1 other;
     cagggtggaa ccggataagt gacgaaaatt tttttctgtt aaactacatt caaaatgtag        60
     tacaacgccg cctgaacgag tgtcctatct ctatctgtta gagagttatg attttttcag       120
     gtttttttcg actaaacccg accttacgtc ataaaaacac tatttctcat cttgtgcctc       180
     acttatttac atttttcacc tcattttcgg attcagcatt aaatttccta taataataga       240
     tcattttcgt agttatttaa ctttaatcag attcatttat tacaataaga acgttaattt       300
     ttttaggaat ttagaatttt catgaatttt caaaaattag cctcttcgac aaaattggtc       360
     ttagaggctg tcaaatttct caaaaactgc tccttttaat actctttcca atggtataat       420
     aatcagtttc aataatagct gttttctttg gtctattact gagaaagtgc tgaaaaacac       480
     ggtgttagcg aaggaagcaa aggggactgg atgaagcgta ctcgcatatc aatactatta       540
     tttattaaca aaatcatttc tttaagcatg taaaatacat aattacttag taattattga       600
     tgtatcatgt tctcaaaatg ccgacctcga ttcctgacgc ataaccgagc gcgttttcgc       660
     attgctccca gtgttgttga atcttcctca caacgttagc agaaatttaa tttatcaaca       720
     agacggagct ccaccttatt attcggtgaa cgtcagaaga tggttgtcgc aacgttttcc       780
     tgagtggata gggcgaggtg gaactaccgc gtggccacag agatctcctg acctcaaccc       840
     tatggaccac ttcgtatggg gttttcttaa gagtgaggtc tacaaggttg aggtcaacag       900
     tgaagaagag gtgagaagac gggtaattgc tgcttcagaa aaactgaaag aacattttca       960
     acaacagtgg gagcaatgcg aaaacgcgct cggttatgcg tcaagaatcg aggtcggcat      1020
     tttgagaaca tgatacatca ataattacta agtaattatg tattttacat gcttaaagaa      1080
     atgattttgt taataaataa taatattgat atgcgagtac gcttcatcca gtcccctttg      1140
     cttccttcgc taacaccgtg tttttcagca ctttctcagt aatagaccaa agaaaacagc      1200
     tattattgaa actgattatt ataccattgg aaagagtatt aaaaggagca gtttttgaga      1260
     aatttgacag cctctaagac caattttgtc gaagaggcta atttttgaaa attcatgaaa      1320
     attctaaatt cctaaaaaaa ttaacgttct tattgtaata aatgaatctg attaaagtta      1380
     aataactacg aaaatgatct attattatag gaaatttaat gctgaatacg aaaatgaggt      1440
     gaaaaatgta aataagtgag gcacaagttg agaaatagtg tttttatgac gtaaggtcgg      1500
     gtttagtcga aaaaaacctg aaaaaatcat aactttctaa cagatagaga taggacactc      1560
     gttcaggcgg cgttgtacta cattttgaat gtagtttaac agaaaaaawt tttcgtcact      1620
     tatccggttc caccctg                                                     1637
//
ID   Mariner-N10_SIn repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   04-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N10_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-334
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 413-413 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. The 3'-end is not determined.
XX
SQ   Sequence 334 BP; 98 A; 98 C; 73 G; 65 T; 0 other;
     cagggtgatt cagaacgacc catgtgtccc tgcaaagacg tgttcttgag taaattctga        60
     gacgattttt cctctacgaa aattttgtcc gacgcttact ttttgaattg caagaggata       120
     aagttagcga atcatgggcc gcgtacacat ggtagacaga ggcggcgcaa ctcaccgtcc       180
     gacgcgggcg cttacgcggg gcacccttgc gatcactgtt tgacaattat tctaccgcac       240
     gaaagcataa aacacataag catacgcgcg catacacaca cacgcacaca cgcacgcacg       300
     cacgcacgca cacacgcaca cacacacaca caca                                   334
//
ID   Mariner-N11_ACe repbase;    DNA;    INV; 529 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-529
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 534-534 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~86% identical to the consensus.
XX
SQ   Sequence 529 BP; 178 A; 83 C; 95 G; 173 T; 0 other;
     tttgagtatt gatttagttt tgagggtttt gcaagagatg gcactaatgt cagtgttgtc        60
     gaagacattc caatcacagc tattatttct taatgcttta atattactcc atgatattta       120
     gtcgtttact aacaatagac gcagtaaaca tcgtgtttat accatttaaa aaatggagct       180
     tcctaaagag cattttcgac atgcgttgct tttgtttttt aatcagaaga aaacggcggc       240
     tgaaggtcat agaattctga tagaaactta tggtgatgtt gctccatcaa ttaagacatg       300
     tgaatattgg ttctgtcgat tcaaaagtgg tgatttcaat gttaacgaca aaagctggaa       360
     aatgcagatt tgcaagcatt attggacgaa aatccagcac aatccacttc agaacttgcc       420
     agagaattaa atgttgatcg tacaacagtt attaaacgtt tacgtgatat gttgtttaaa       480
     taaatcagtt tttgaaaaaa aaaccctcaa aactaaatca cactcctaa                   529
//
ID   Mariner-N11_DTa repbase;    DNA;    INV; 1641 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1641
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6202-6202 (2021).
XX
DR   [1] (Consensus)
XX
CC   96% identical to the consensus.
XX
SQ   Sequence 1641 BP; 539 A; 280 C; 274 G; 538 T; 10 other;
     cagtgatgaa cttaattctt ggcacacttg gcatcttgga ctttaggttc aattttctcc        60
     gactaatata tgaataaaaa aattaaacaa aatttgttta tataaaggcc acattttact       120
     gtttaaataa tttggtttca tatttatatc tcttaagact aattttttaa aactcaaaaa       180
     cgaaaaaatk agcctattct gcccgaacaa aattcttggc acacttgtgt tgtatttaac       240
     tatttcgcta aaacttaacc gatttgactc attttttttg ctaagtccgc tttgcctcag       300
     ttgtctagat ggcataatgc taaatttgta tccttaaatc gttaaaataa cttaatttta       360
     actaaaaacg gttatataaa agtatgttaa atgccaatac ccatatctgt gcgaaaaata       420
     atattttaag ggcaggatca gggtcaatca tatgctaata ttaggaaata tgtgcccaga       480
     agttgttttt accattcgga tccttttacg gcgttttaaa ggactctcac tgtgccaaaa       540
     tgcaaggcac acagcccgac ccatgggttt aagaggccag ggaagcgaaa ggatcaagaa       600
     aaaggataat gtcaaccctt agattttata agcacagatc gaagttcagg ataggaagga       660
     cttttacaag gatattcaac caacggactt tttaaaggcc ctgcaatgtg ctaactaaat       720
     ttttttgcag ctagaaaawa ttaagtgatt tcaaaggcca ccaatacgag ccatttagga       780
     tacaaaaagg gatactttag tatcccaatc gactttttwa acctttttac tttatcaggt       840
     gctawascaw cccttttcgt agacttaagg gctcgkawwg ktggccttca aaataaatga       900
     attttttcta gctgcaaaaa aatttagtta gcacattgca gggcctttaa aaagtccgtt       960
     ggttgaatat ccttgtaaaa gtccttccta tcctgaactt cgatctgtgc ttataaaatc      1020
     taagggttga cattatcctt tttcttgatc ctttcgcttc cctggcctct taaacccatg      1080
     ggtcgggctg tgtgccttgc attttggcac agtgagagtc ctttaaaacg ccgtaaaagg      1140
     atccgaatgg taaaaacaac ttctgggcac atatttccta atattagcat atgattgacc      1200
     ctgatcctgc ccttaaaata ttatttttcg cacagatatg ggtattggca tttaacatac      1260
     ttttatataa ccgtttttag ttaaaattaa gttattttaa cgatttaagg atacaaattt      1320
     agcattatgc catctagaca actgaggcaa agcggactta gcaaaaaaaa tgagtcaaat      1380
     cggttaagtt ttagcgaaat agttaaatac aacacaagtg tgccaagaat tttgttcggg      1440
     cagaataggc tcattttttc gtttttgagt tttaaaaaat tagtcttaag agatataaat      1500
     atgaaaccaa attatttaaa cagtaaaatg tggcctttat ataaacaaat tttgtttaat      1560
     ttttttattc atatattagt cggagaaaat tgaacctaaa gtccaagatg ccaagtgtgc      1620
     caagaattaa gttcatcact g                                                1641
//
ID   Mariner-N11_HSal repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-567
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 965-965 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 567 BP; 177 A; 97 C; 101 G; 192 T; 0 other;
     ttgggttggc aactaagtga ttgcggattt tgtcgacaga tggattttac actttctttt        60
     gtttcgttaa cgtgttcaaa gtacctaacc tatatttttt tcttattgtt tggacttcta       120
     cctttcattt agtacaaaaa ttatatcgat tagttcttta gttttgtttt tatcccaatt       180
     taaaaatgga agagcaagac gtgcacttca gacatatttt attgtattat ttccgaaaag       240
     gcaagaacgc atcgcaagca cacaagaagt tatgtgccgt atatgggaat gaagccttga       300
     aagaaaggca gtgtcaaaat tggtttgcca gatttcgttc tggtgatttt tcattgaaaa       360
     atgctcaacg atctggccgt ccagttgaag tcgatgagac ccatatcaag gccattatcg       420
     attcagatcg tcatagcaca acacgtgata ttgcagagaa gctcaatgta tcgcatacat       480
     gcattgaaaa aaatttaaaa aagcaaattt aaaattttga attttcattc ttatttaaaa       540
     tccgcaatca cttagttgcc aacccaa                                           567
//
ID   Mariner-N11_LMi repbase;    DNA;    INV; 1599 BP.
XX
AC   .
XX
DT   29-MAY-2014 (Rel. 20.01, Created)
DT   29-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1599
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 88-88 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1599 BP; 479 A; 280 C; 377 G; 463 T; 0 other;
     cagtagaacc cctcatatcc gacctcggga tatccgactc ctcgggatat ccgaccatgt        60
     gcccgactgt cttctgccgg cgacgagtca aactgactca acagtgctgt gcattgtttc       120
     tctgttaaac tgccagttgt gttctgattg tcgacgtgaa cgttgctcta ctttattgtt       180
     ttttgttttc gtgattactg tatctttggt gataaactgt gttgtgcgat tagtgaaagt       240
     tcgctatggc ttctcaaaaa cgtaagcgtg tgtgcgtttc ccttcaacaa aaacttgaag       300
     tgcttcaacg tttggaccgt ggtgagtcac tagtcaaatt agccgcagag ctaggggtcg       360
     gcgtgacaac tgtaaaagac tggagaaaaa accgtgaaga ccttgaaagt tattctatga       420
     cagttgaaac ggaagatgct ttaaaaatcg gaaaatgtta aaaaaaccta agctagaact       480
     tgtagacgaa gctctttggg tttggttttg tcaagaacgg cgcaaaggga ctcctttgtc       540
     ggggcctctt gtgaaagaaa aagccgtaaa gctgtttgaa aaattgggag gagatgttga       600
     gactttccag gcaagcgaag gttggtttca ccgctggaag cttcgccacg gtattagaca       660
     tgttattgcg ggcgaaaagt ttctgctgat gagatgctgc aaaaattttg tagaaaagtt       720
     tcaaaagttg gtgtcggata gtaatcttgt agctgaacaa gtatatagga cgagaccgga       780
     ttaaacatca aagacgcaat ctataccgtc gcttctgcat gggatgaaat gaaacagaca       840
     actcttcaaa aagcatggaa gaaaatttgc atcattaaaa caaatgcagt gctgataagg       900
     acgatgagcc cacttcaaga actgcagctg acagatgtgg agaaatggct gaccgaagct       960
     gacatggcag gtctacaaat gaagaactca atgatgacga aatagttgct gtagttcaaa      1020
     gcgcaacaaa tgaagacagc gacgctgaag aagaagagtt gatcgtgata ttggtgtgac      1080
     gcattcagag gctaaagatg catttgacat tgtgttaaaa tatttggagc agaacccgag      1140
     agccacccct atggacgtgt tgtgggcaaa gaaatggcgt gatttttcag cgaaatcaag      1200
     attgggtaaa ttgaagcaaa agagtattaa ggacttcttc aaatgaggta ctgtacacac      1260
     tgtatgtaat tgtttgcctt tttgattaaa cagtacagta ctgtattttt aatgttttcg      1320
     ttaattaata taaaaattaa acttttccat tttataaaaa aactgttact ttttattaga      1380
     atatgtactg taaaataatt ttttattgaa tacagtaatt acgattaagc agcactgtgt      1440
     gtattgagtg tgtattttgt acaatactta taatttagtg cagtatacgg ctgttttgac      1500
     ccgaaaaaac gtgttttatt gctcctcggt atatccgacc ttttggccgt tccgaccacg      1560
     gcccggtccc gtgaaggtcg gatatcgggg gttccactg                             1599
//
ID   Mariner-N11_RPr repbase;    DNA;    INV; 927 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-927
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3292-3292 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 927 BP; 274 A; 199 C; 186 G; 268 T; 0 other;
     cgaggtctgt aaattaagta atgagactga tttttttaaa attttttatt caaaaagaat        60
     tacaattcta tattgtcacc ttcaaaataa cttccttctg aagccacaca gcgctggaga       120
     cgtttcttcc actcctcata gcagtgctcg aactccgata ctggaatagc cttcagctgg       180
     tcggttacag ccgtttgaat gttttcgact gtcccaaaat gactttttgg attcaattga       240
     aaatgacccc cattttctgg aacgtgtcat tactggtgac gagtcttggg tgtttgagta       300
     cgacccagaa accaagcgcc agagcatgga gtggcacact tcaacctctc caaggcccaa       360
     aaaagcaagg atggcgaagt cgaagatcaa atgcatgctg atttgttttt tcgatatcca       420
     cggaatcgtc cacaaagagt ttctacctca aggtcaaacg gtcaatcaac acttttaccg       480
     agaggttctt gaaaaacttc gaaaaagggt cattcgtgtg agaccaaaca tcaagaacaa       540
     gtgggtgttg catcacgata atgctccttg tcacacagca atttcaataa acgagttttt       600
     ggccagtaaa aacattcctg tggctcctca gcctccttat tcgcctgact tgagtccttg       660
     tgactttttt ctcttcccga agttgaaaaa tcacctcaag ggaactcatt ttgggacagt       720
     cgaaaacatt caaacggctg taaccgacca gctgaaggct attccagtat cggagttcga       780
     gcactgctat gaggagtgga agaaacgtct ccagcgctgt gtggcttcag aaggaagtta       840
     ttttgaaggt gacaatatag aattgtaatt ctttttgaat aaaaattttt taaaaaatca       900
     gtctcattac ttaatttaca gacctcg                                           927
//
ID   Mariner-N11_SIn repbase;    DNA;    INV; 620 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.02, Created)
DT   07-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N11_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-620
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 414-414 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 620 BP; 198 A; 118 C; 126 G; 178 T; 0 other;
     cgaggtatgt tcggaaagta aggttacgac aaatattaca aatcgaaaaa tgtgaattta        60
     tttatgaaac ttacatggaa tgttacgtag gtatataact atttttcaac atagtcacca       120
     ttcagttcct tacatttagt gagccgcggg atcaattttt ttatgccctc gttgcactcg       180
     tttcccgcca acttcctcga ccattcgtag accgcgtctt ttacctccaa atcggacgaa       240
     aatcgttttc cactgagatg ctcctttaga cgagtgaaaa ggaagaaatc agaagatgca       300
     aggtccggac tatgggatgg atggtttaaa acatcccaac caaaaaggtt tctaaaggag       360
     catctcagtg gaaaacgatt ttcgtccgat ttggaggtaa aaaacgcggt ctacgaatgg       420
     tcgagaaagt tggcgggaaa cgagtgcaac gagggcataa aaaaattgat cccgcggctc       480
     actaaatgta aggaactgaa tggtgactat gttgaaaaat agttatatac ctacgtaaca       540
     ttccatgtaa gtttcataaa taaattcaca tttttcgatt tgtaatattt gtcgtaacct       600
     tactttccga acatacctcg                                                   620
//
ID   Mariner-N12B_LMi repbase;    DNA;    INV; 674 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-674
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 9-9 (2015).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus.
XX
SQ   Sequence 674 BP; 169 A; 148 C; 181 G; 176 T; 0 other;
     catggtgtgt ctaaaaagtt cggtgaatgg tgtcatatct gaacggcaac ttggcgcatg        60
     tgtgcgtgca tgcgcatggg tcttcagaga cttgaggaga atcgatacac agcatgcact       120
     gcatgtgact ggcagtgtaa acagactgcg accagtgaac gtagtcagtg tgagaggaag       180
     tgtcacagcg caatggagca acgtgtaaac atcaagttct gctacaaatt ggggaaactg       240
     caacggagac acacagaatg ttgtggcaga gttgcacagg actggaaaat ggatgctgct       300
     ccatgacaat gcccctgcac actgcgcatc cgtgtgcgcc aattcctggc gcagaagatg       360
     gtaactgttc ttgaacaccc tccgtactcc cctgatctgg ctcctgcgga cttcttcctg       420
     tttccccgct tgaaggcggc catgaaaggt gaacgttttg cggacgtgaa tgccatcaaa       480
     gatcgtgtga cagccgttct gcgatcgatt ccacaggagg cctttgctga tagtttccag       540
     aagctgtacg aacattgtca aaagtgtgtt gtagtgggtg gcgactattt tgaagggcaa       600
     taaagaacat ttgtttgtat cttttgtttt tttgttgtct gatagcattc accgaacttt       660
     ttagacacac cacg                                                         674
//
ID   Mariner-N12B_RPr repbase;    DNA;    INV; 1026 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1026
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3293-3293 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1026 BP; 283 A; 211 C; 236 G; 296 T; 0 other;
     cagggtgggg caaaaggtat gaaccggttt taaagggatg taaaacaaaa acaattcaac        60
     ttacagaaat tatgtttata ttgtttaatt cagtacagaa tctagttttt tacattaagt       120
     ttgaaagatg atatcacgta ggtggcggcc gtcagccgcg atgcactctt gaaggcgaat       180
     tctgaagttt tcaaccgctc ttctgcacat ttcgatgggt attgccgtaa cttcctctct       240
     gattctgtcc ttaagttctt cctgggtatg tggacgatgt ttcagcagtg acgaggccca       300
     cttccacctg tgtggagctg ttaataaaca gaattttcgc tattgggcta atgaaaaccc       360
     aagggaaatt caccagaggc cacttcactc ccctaaagtg actgtatggt gtgcagtatc       420
     ccaatttggg attattggtc cttacttttt cgaggataat gggcgaaccg tcactgtcac       480
     cgctgagcgc tatgtgacaa tgttggaaga gttttttgaa cctgagctgg aagaattgag       540
     tgaagcaact aatctgggag acatctggtt ccaacaggac ggggctacat cccacactgc       600
     taggatttca atggcgagat tgaggcaagt gttcccccag cgcctcgtct ctttgagggg       660
     gtgacgtgga gtggcctgcg cgctcaccag atttgagcat ttgtgatttt ttttctttgg       720
     gggtacataa aggaaaaagt ttttaaacat cgtccacata cccaggaaga acttaaggac       780
     agaatcagag aggaagttac ggcaataccc atcgaaatgt gcagaagagc ggttgaaaac       840
     ttcagaattc gccttcaaga gtgcatcgcg gctgacggcc gccacctacg tgatatcatc       900
     tttcaaactt aatgtaaaaa actagattct gtactgaatt aaacaatata aacataattt       960
     ctgtaagttg aattgttttt gttttacatc cctttaaaac cggttcatac cttttgcccc      1020
     accctg                                                                 1026
//
ID   Mariner-N12_ACe repbase;    DNA;    INV; 904 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.03, Created)
DT   15-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-904
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 535-535 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to the consensus.
XX
SQ   Sequence 904 BP; 283 A; 182 C; 165 G; 274 T; 0 other;
     cacagtgcga caaataattt ttaagactgg cgccatatct cagcaattag tggcaccatt        60
     ctgttgaaca ttagcatcat tagaaagata catttttctt ctttcaaacg cacccaagtt       120
     catgcaaatc ggataacaaa tgacaaagtt atgacagttc ttcctaaaca aattttaaat       180
     cgatgttgaa attttatcat ggaacaaaga gcggtcatta aattcaacgc aaaacttggt       240
     aaaagtgcat cagaaacatt ccggttgatg cagcaagtgt atggtgacgc ttgtttaagt       300
     cgatcaaatg ttttcctgtg gcataaacga tttttggatg gtagagagtc gctcattaca       360
     ttcgctcaat gctcattaca ttcttcgata gcaaaggaat tatccataaa gaattcgctc       420
     catctggtca aacagttact ggcaactatt atctcgaagt tttgaagcgt ttgatggcca       480
     gaatccgtcg tatccgtccc gaatatcgag atccagaaag ttggtcgctg ttgcacgata       540
     acgcgccatc tcacaattca ctcattgttc gtcaattttt ggcccgaagt ctgtgtactc       600
     aatcatccgc catattcacc tgatttggct ccgtgcgact tctctttatt cccaaaattg       660
     aaattaaaat tgaaaggatg ctttttcgaa gacattccga ccatccaaac agcttcaaca       720
     cgggcactag aggcaatacc acaaaatgag ctggatcatg catttgaatc acttttgaat       780
     cgctgtaaca agtgtattga agcaagagga gattattttg aataaataaa acaataagca       840
     taagaatatt ttgtttctat agcgttttat aggcccagtc ttaaaaatta tttgtcgcac       900
     tgtg                                                                    904
//
ID   Mariner-N12_DTa repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   08-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1642
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6203-6203 (2021).
XX
DR   [1] (Consensus)
XX
CC   97% identical to the consensus.
XX
SQ   Sequence 1642 BP; 568 A; 250 C; 249 G; 570 T; 5 other;
     cagtggctca cagcttattt cgtgcagagg taaacttaaa attcaaactc gtatagctaa        60
     caaactatac gataatttac caaaatttaa atgcagttat gttaggtagt attctggccc       120
     ttattaaccc acttctctat ttttagattc catagaataa cacttaaaat taagaaaaac       180
     taaaatcatt gactttttta atgtcacagc ttatttcgtg caaaacttta aaattattat       240
     tatttgtaaa ttatggctca aaatgtgttt ttttaatttc ttcattgaag cgcctattat       300
     taacaatttt tttttggaat tttaattatg tcaaatacac taaaaaaaaa agttacatgc       360
     aaaaaaaata aaataatcaa ttaaaatgtt taaatgtata ttttcgtatt aaaaatgtcg       420
     aaaaatgtat cccaaatttg cagaatttat tgagcaagga cccagttctc aactatccat       480
     gatcaaacgc ttcttacgaa ggaattaagt ggtaccaata ggcccaaaat gcatcctgta       540
     caatagtatc tgaaccggaa cagacttaaa attattaaaa atgtatagta aatttaacag       600
     tacgggcttc aaagttggct aatgttcgca aaggtamatg kttctaakma tkcttagaaa       660
     aaaacttaat ttgaagtccc taaaaacatc tgacatgccc aaaccctatc acaacccgcc       720
     actttgctta agcgtagatt ctcagcgttt gtgaggtcct cggaactccg tcaggatcat       780
     acatggtgca tacaagtaaa caatatttag tctgtgaggg cttaaaagca aatataaaat       840
     cattccagat gaaaatttga cgaatatcga gcttcctggc tatttttcat ctgctgagca       900
     tatacttgaa ggtaataaat acgttatttc ggcttggttg gccgataatg ttgtgatctc       960
     gctgtaagag gcggaaattt tgttctaagc attagcttag accatttccg ttgcgaacaa      1020
     ttacagccaa ctttgaagcc cgtactgtta aatttactat acatttttaa taattttaag      1080
     tctgttccgg ttcagatact attgtacagg atgcattttg ggcctattgg taccacttaa      1140
     ttccttcgta agaagcgttt gatcatggat agttgagaac tgggtccttg ctcaataaat      1200
     tctgcaaatt tgggatacat ttttcgacat ttttaatacg aaaatataca tttaaacatt      1260
     ttaattgatt attttatttt ttttgcatgt aacttttttt ttagtgtatt tgacataatt      1320
     aaaattcaaa aaaaaattgt taataatagg cgcttcaatg tagaaattaa aaaaacacat      1380
     ttttagccat aatttacaaa taataataat tttaaagttt tgcacgaaat aagctgtgac      1440
     attaaaaaag tcaatgattt tagttttttt taattttaag tgttattcta tggaatctta      1500
     aaatagagaa gtgggttaat aagggccaga atactaccta acataactgc atttaaattt      1560
     tggtaaatta tcgtatagtt tgttagctat acgagtttga attttaagtt tacctctgca      1620
     cgaaataagc tgtgagccac tg                                               1642
//
ID   Mariner-N12_HSal repbase;    DNA;    INV; 2364 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2364
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 966-966 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 5'-terminus is not determined.
XX
SQ   Sequence 2364 BP; 811 A; 383 C; 381 G; 786 T; 3 other;
     ttacacatgt ctgggcataa tgagattata ccattatgtt sttaaaacat taagttatat        60
     tatttctgat cgtatgcttg ttttatttta tataataaat tatatatatt ttatataata       120
     aatacgaaat ataaaagctg gacgccagcc agctgaaagc tggacgctac ccagctgaaa       180
     gctgaaagtt ggacgccagc cagctgaaag ctagaagctt ggcgtttcaa attttasggg       240
     ataatttttt tgttagcaat ttatttctgt caaattaatg accgaatacg ttttcatacg       300
     tattgattca ataattttta ttaatattat ataaaacatt ttttagttta gttatacgcg       360
     ctttacgatt gtcgttwaaa ttttacaggc ctctaattgt atatataatt gtcaatctta       420
     aattttataa tatattatta aattatatta tgcgctaaat aggtgaaatc atatttgata       480
     acatttaagc gataatataa aattcattca cacacataca taataatgtc ttacaataaa       540
     catattagta tatctagtta atactttttt aattttgtgt tatattatca agatattcaa       600
     tgcacttcat gcacaacgcg cttgcccttt tttattcact ttgacttttc tgtaaaattg       660
     cagtataaac ataaatttca caaatatgtg attcaggaaa caaacgagaa taaaaagaca       720
     attgagctag tacgctgtta atcgtgcgtc aattatttac ttttaataat catagttaaa       780
     atctacaaat atccatacgt atgttccagt cgtaattttt cgactttttt caatagtaaa       840
     atataaaaat tataattcgt gacatttgtg tgatagttca ttcgggaatc gcggagataa       900
     catattttat aattgtatcg tgcatatatg taagtttgtg ttattcggaa cttgtctgtg       960
     tagagtcctt atttgtaaca atgaaggatt tataaaatat tccgtcagcg aatccggtca      1020
     acgaaagttg agtgttttca tgactagata aacgttactc accaacagta aacgccgaag      1080
     ccccgctatt tgcaagtatt atgtgtgaaa agtcaaaacc ctacagcgcc caatggcctc      1140
     gataacaaac gtgattcacc tgtaggttaa acaaaaataa ggagcaacgc agattcgcca      1200
     agaaaaacaa cttcaacaaa gtaatcgttc accaactgaa tcaaacacag acaatcacaa      1260
     tgaaatcgag cacgtggttc aataataaac aataaccatt attggcgtgc gataagagat      1320
     ataataaaca ttgactatta ttggcgtgcg tccacgttca aaaatcaagg acgagtgacg      1380
     agtaccagac ggcagaaaga cttaaaatat atctcgaaaa ctctgtttgt aaacaggatg      1440
     gtacattata atctatcgag tattttgatg atggatagat aattcagaaa atatacattt      1500
     gaaatttctg tacaaatagc gcgccccaca cgcatttgct acgttgttat atatgcgatt      1560
     tatctctgct cacatgttta ttttgtgtaa aggactggtc tcacgatgct cgattgtgtt      1620
     aataattttc tatacgctaa cttttatgaa gttgcatatg gaacattata tgacaacgtt      1680
     catgattttg aattgttagt gttattgttt ttgtcgaaat catgaaggtt gccatgcaga      1740
     gctccgtgca caacttcata agttaacata tagaaaatca ttaacacaat cgagcatcgt      1800
     gagactaata tcatatcatt acgattaatt atagcataag aaaatatgca caagcagtcg      1860
     tgaagcatag tgcaattgca gagaaatatc acagcgtacc tacctacagt atctatctac      1920
     tcgggcagcg cggcacatat accatgaagt tttctcattg cgttttgtcc aaaatattaa      1980
     ataccatttt ctaatattat atatggatgg atttggtatt taatgctcta caatttttgt      2040
     ccttacaaaa acttaaaaat tttgccagag taacgagagg ggggggagta gttcaacatt      2100
     tgaaatttta aaaaactgaa cacatggttg caaagagcat aaaatattgc aaaacttttg      2160
     tctgaaactt tttttcatat gactcataat ttagaaaata tttgataaaa acgataacgg      2220
     ctattttttt caaggggtgg tttcaccccc taaacatgct ccgaagccga tataaaaaaa      2280
     tatgtatccc ttagtttttg atgctctaca acatatccga agcccattca aatcggtgag      2340
     ggacagttgt gacactctcc ttgt                                             2364
//
ID   Mariner-N12_LMi repbase;    DNA;    INV; 681 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 20.01, Created)
DT   03-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-681
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 89-89 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 681 BP; 177 A; 156 C; 176 G; 172 T; 0 other;
     caaggtgcgt ctgaaaagtt cggtgaatgg tcccatattt tacaaaccgc gctggcgagg        60
     atgaggtgcc cgcgcataca cattgaggga catgtcaaca agcgccccct atcgtgcaaa       120
     gcactgcagt gaagcggtgg tacacgctgc gacccagcta acagggtcag tgtgagaact       180
     cgtgtcattg caacatggag cgcaaaatgg agcaacgcgt taacatcaag ttttgtttca       240
     aattaggcaa aacggcgacg gagacccatg ggatgttagt gcaagtgtat ggtgttgaag       300
     cagtgagtaa aaagtgtgtg tttgagtggt ttaaaaaagg aaggtgagga tgagccactt       360
     cgggtcgacc gtaaggtcac tcttccacac cttatctcca gatttggcgc cgcagacttc       420
     tttctgtttc cccgccttaa attagccctg aaaggcttac gcttcgcaac ggttgcggag       480
     atccaacaac gcgtgacctc agtgcttcga gcgattccac aagaagcgtt tgctgacagt       540
     ttccaacagc tgtacaaccg atgtcagaag tgtattgtag ccaatggcga ttactttgaa       600
     ggccagtaaa ggtattttgt ttgtaactct tgtttcctat atttcctgag accattcacc       660
     gaacttttca gacgcacctt g                                                 681
//
ID   Mariner-N12_RPr repbase;    DNA;    INV; 909 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-909
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3294-3294 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 909 BP; 262 A; 201 C; 186 G; 260 T; 0 other;
     agggtggggc aaaaggtatg aaccggtttt aaagggatgt aaaacaaaaa caattcaact        60
     tacagaaatt atgtttatat tgtttaattc agtacagaat ctagtttttt acattaagtt       120
     tgaaagatga tatcacgtag gtggcggccg tcagccgcga tgcactcttg aaggcgaatt       180
     ctgaagtttt caaccgctct tctgcacatt tcgatgggta ttgccgtaac ttcctctctg       240
     attctgtcct taagttcttc ctgggtatgt ggacgatgtt taaaaacttt ttcctttatg       300
     tacccccaaa gaaaaaaatc acaaatgctc aaatctggtg agcgcgcagg ccactccacg       360
     tcacccctca aagagacgag gcgctggggg aacacttgcc tcaatctcgc cattgaaatc       420
     ctagcagtgt gggatgtagc cccgtcctgt tggaaccaga tgtctcccag attagttgct       480
     tcactcaatt cttccagctc aggttcaaaa aaactcttcc aacattgtca catagcgctc       540
     agcggtgaca gtgacggcct gcgcgctcac cagatttgag catttgtgat tttttttctt       600
     tgggggtaca taaaggaaaa agtttttaaa catcgtccac atacccagga agaacttaag       660
     gacagaatca gagaggaagt tacggcaata cccatcgaaa tgtgcagaag agcggttgaa       720
     aacttcagaa ttcgccttca agagtgcatc gcggctgacg gccgccacct acgtgatatc       780
     atctttcaaa cttaatgtaa aaaactagat tctgtactga attaaacaat ataaacataa       840
     tttctgtaag ttgaattgtt tttgttttac atccctttaa aaccggttca taccttttgc       900
     cccaccctg                                                               909
//
ID   Mariner-N12_SIn repbase;    DNA;    INV; 1118 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.02, Created)
DT   07-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N12_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1118
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 415-415 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 1118 BP; 348 A; 194 C; 210 G; 366 T; 0 other;
     gaaaagagga tattaaaaaa gtgttaattt tggtctccaa ggcactccta aatagatctt        60
     aaaaaatcat tgtttgggtt ctcaaataac aagaaaaaac aattatttgt ccgaaaagtg       120
     gtggaaacat tgcaagaata gcttaaatat agtaaaaaat gacattaatc acatgtaata       180
     attggaaaac tatgatttta gctaaaattg tgggtacata catgtaaaga tcgcagacta       240
     ctttagcact atccaggatg caccacgtga agatatagtc cgcctagcat cccttggcag       300
     agatcgggac cccacagttt gtcactcctg tgatattttg tgacttcaaa ccctctctgc       360
     cgtgtgtatg cgtgtgtgtg cgaatgtata atataaaaat aagcgaattc acatcttgtt       420
     tgcactttca gaatctgatg ataattcttc attaaagtaa tcattgtaat cattttgtat       480
     atttactcgt tgataaaaca aaagatggaa gtgatgttat tattgggcat acttgtggat       540
     gcaaggtggg tcaacgtgtt gttgaatgtt gttctcaaca cttgtgtggt tttttggtaa       600
     agctcgattt caaaagaaca tttcaatgcc tgctcaattc ctcgattact ttaatgaaga       660
     atcattatca tcagattctg aaagtgcaaa cgaggtgtga atttgcttat ttttatatta       720
     tacatttgcg cacatacgca tacacacggc agagagaaag tttgaagtca caaaatacca       780
     cagaagtgac gaactgtggg gtctcgatct ctgccaaggg atgctagatg gactatacct       840
     tcacgtggtg catcctagat agtgctaaag tagtctgcga tctttacatg cagtatgtac       900
     ccacaatttt agctaaaatc atagttttcc aattattaac cgtacatgtg gttaatgtca       960
     ttttttacta tatttaagct attcttgcaa tgttcccacc acttctcgga caaatgactg      1020
     ttttttcttg ttatttgagg acccaaacaa tgatttttca aggtctattt aggagtgcct      1080
     tgggggccaa aattgacact tttttaacac cctccttt                              1118
//
ID   Mariner-N13_ACe repbase;    DNA;    INV; 531 BP.
XX
AC   .
XX
DT   29-MAY-2012 (Rel. 19.03, Created)
DT   10-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2),  e100200- e100200 (2011).
XX
RN   [2]
RP   1-531
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 536-536 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~81% identical to the consensus.
XX
SQ   Sequence 531 BP; 189 A; 74 C; 75 G; 193 T; 0 other;
     caaggaaacc catggaagtg tccctccgat tttgatgagc tttgaatatg ttgttttcta        60
     gacaaaaata agggacacgt atttttttat agccaatcgc acttttaagg gatgaaacat       120
     ctctttgaag aaaatcggtt attttctttc gaagcgaata tcgtcgaaac tgtaagagat       180
     agaaaaaaat gtttgaaata aaagttgaat ggttttaaga gtacttaata attataatta       240
     aaaaattttt attttatttt tataaataaa aattttttta tttaaacaaa tttttaatta       300
     ttattataaa gtactcttga aaccattcaa cttttattca gaaaattttt tttctatctc       360
     ttacagtttc gacgatattc gcttcgaaag aaaaaaaccg atttttttca aaggagtgtt       420
     tcacccccta aaagtgcatt gggcccttaa aaaatatcct tatttttgtc taaaaaaaca       480
     atattcaaag tagctcatca aaatcgaagg agacttccat gggtttcctt g                531
//
ID   Mariner-N13_DTa repbase;    DNA;    INV; 1089 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1089
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6204-6204 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1089 BP; 337 A; 215 C; 207 G; 329 T; 1 other;
     cagtggcgga caaaagtcta cggacgaccc cctttttggg agttcaccca ctcctattgc        60
     ttttacggga aaagtaatga tgcagttttg ttcttaatgt tattaatata caaaaaccaa       120
     aattttattc ttattcataa aaaactttaa aagttacaga cgaaaatctt aaaaatggca       180
     ttgacaaaag tctacggacg attttttaca tagaactttc aaaattttcg ctccaaaatt       240
     acccaaacct gctctataat ttgtatgccc aggccttatg gtggtgaaaa caattgccga       300
     aaagcataaa acagcagcta tttcttaagg atatgcgccg tatgcttagg atcattatcc       360
     tgttggtaga tcgagatggt tccgaggcat tatttgtcca cagatgcctt caaattatgt       420
     tcaaatatgg tcttatactg agaacgaacc ataataccct cgacgatgac caaatttcct       480
     actcccgagg cttcaactga tccccacacc aagacttccc waccatactc ccaccacagt       540
     actaatttgg accgtaaagc acttcggtgg gagtgacatg gtgtggggaa cagttgaagc       600
     ctcgggagta ggaaatttgg tcatcgtcga gggtattatg gttcgttctc agtataagac       660
     catatttgaa cataatttga aggcatctgt ggacaaataa tgcctcggaa ccatctcgat       720
     ccaccaacag gataatgatc ctaagcatac ggcgcatatc cttaagaaat agctgctgtt       780
     ttatgctttt cggcaattgt tttcaccacc ataaggcctg ggcatacaaa ttatagagca       840
     ggtttgggta attttggagc gaaaattttg aaagttctat gtaaaaaatc gtccgtagac       900
     ttttgtcaat gccattttta agattttcgt ctgtaacttt taaagttttt tatgaataag       960
     aataaaattt tggtttttgt atattaataa cattaagaac aaaactgcat cattactttt      1020
     cccgtaaaag caataggagt gggtgaactc ccaaaaaggg ggtcgtccgt agacttttgt      1080
     ccgccactg                                                              1089
//
ID   Mariner-N13_HSal repbase;    DNA;    INV; 847 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-847
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 967-967 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 847 BP; 264 A; 209 C; 157 G; 217 T; 0 other;
     cagggtgttc cgtaagtcga ggtcaatcgc tcgagagatg aatggggaac cacaaacaag        60
     aaagaaagtt gatacaaaca taggtccaaa aatgcgttgt tttcgagtta tcgccatttt       120
     tatgttaaaa tttgaaattg ctttgctttc gaattttttt ggttttggaa tttcgatggt       180
     ttttatgagt ttcaaaacac aactaaagtc aaataaaagt tgcgggctgc tttagcacta       240
     cccaggatgc accgcgtgga ggtacagccc gcttagcatc ccttggcaga gatcaggacc       300
     ccacagttcg tcactcctgt ggtaaatacc acagtgttat tgtacaagct ttgttttcga       360
     acacctcata taatttttac gttcactcac acacacacac accgcacgca cgcacacaca       420
     cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cacatacaca       480
     cacacacaca cacacacgac agagagggtt tggagtcact aaataccaca ggagtgacga       540
     actgtggggt cctgatctct gccaagggat gctaagcggg ctgtacctcc acgcggtgca       600
     tcctgggtag tgctaaagca gcccgcaact tttatttgac tttagttgtg ttttgaaact       660
     cataaaaacc atcgaaattc caaaaccaaa aaaattcgaa agcaaagcaa tttcaaattt       720
     taacataaaa atggcgataa ctcgaaaaca acgcattttt ggacctatgt ttgtatcaac       780
     tttctttctt gtttgtggtt ccccattcat ctctcgagcg attgacctcg acttacggaa       840
     caccctg                                                                 847
//
ID   Mariner-N13_LMi repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 20.01, Created)
DT   09-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1291
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 10-10 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1291 BP; 366 A; 281 C; 268 G; 376 T; 0 other;
     cagtggcgta tgctgggttt gtaacttggg ctatcactac tatctcactt tctaaggttg        60
     taccgagaaa gaaatgctaa gaaaaaaaat cgatatcttg cgctgtttcc gagatattga       120
     tagtgaccgt gccaaatatc tcaagaaatt agcagcaaac gaagaaacgg ttaccggcaa       180
     atgttaaagc gttgaggggg acatccaatg acactacact cccccccccc accccctacc       240
     gaaacccgtg atgggtggtg ggaggcaact ttgaaatctt ttataggaac gcctactttt       300
     tattgcagat ttggattctt cgtgaaaaaa tatgtaactt tcgtatgaaa catttttttg       360
     tttcatgata aatggcgctg taatcggcaa aaatgaaagt gtagcatacc tgtgacgagc       420
     ttcttcagca tttctgtggg cctcatagta ccaggaaatg atatctactc tctctctgca       480
     atcgttaaca tcggggaaca attgcgtaga ggtgggtaca gtccgaatca ttgaaataca       540
     acaaactgtc tggccgcgga ctgatagcat gatcatagtt tgtgtttcat tcgattgtgg       600
     gagatgtcac gagatagcat taacagaaac atgaaaaact gtactctgat tttcctgatc       660
     tgatgtgtat ttgtttgaga tattaccgtt tttcaacaat ttccacattt ttagttttgc       720
     ctattacagc gccatctatc atgaaacgaa aaaaatgttt tatacaaaag ttacatattt       780
     atgcacggag aatccaaata actgtttaat tacacattgc ccatccattt tgaagaatta       840
     gcactaagaa ctgtcaaagt acactgcaca ctatgaaata aataacacca atacagctgt       900
     tgtgaaacgt aacaaacaca caaacacgct ctttgttgct ttaaactgat gcggagttcg       960
     ccaagagcga gtcgtgtccg ttcggcacat ttcggaagca ctcgtgcttg tgttgcgacg      1020
     agggattccg aagccttggc gcgctgttgg ccgcactacc ccacccctcc cttcccctca      1080
     ccttagcgaa ggctgcggca gtgagcgtcc gaagctctgt tctcccactg ttggaatgaa      1140
     gcgaacgaga catattccac actacgcgct aattcttcat gacggaaact ggcttctatt      1200
     gccatttttg ttaatattgg ttcttaattt ctggtttgct ttagatatgg gcttcggtga      1260
     tagctttgat agcccacaat atacgccact g                                     1291
//
ID   Mariner-N13_RPr repbase;    DNA;    INV; 909 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-909
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3295-3295 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 909 BP; 273 A; 173 C; 209 G; 254 T; 0 other;
     cgaggtctgt tcaaaaagta tcgcgaattt tgaatttccg cggattacgt atattcgatt        60
     ttcgattttt ttgtggcgtt atgttggtac tcatgtctct cacttatgcc gacaagttcg       120
     gccattttga atgttcagtt aatttttgac agctgctttg cttgcgcgtg ttttggctcg       180
     tcttcgattt ttgcctattc caaaaaatgg atctaagaat ctattttgtg tgaaaaacaa       240
     aattaagtgc gcggacgcat tccgaatgtt gactgtgaca tatggtgaag ctaccttgga       300
     ccgaagcaac gtttatcggt ggtacaaaat gttctcagag ggccgagaag atgtgaacga       360
     cgaagagcgt gccggacgct cgagcacgtc aacaacagac gaaaacattg atgaagtgaa       420
     gaaaatagta ttggccaatc gtcgaatcat cgttaaagaa gttgctgagg acctaaacat       480
     atcgattggc tcgtgccatt cgatttttac caatgatttg ggcatgagac gggtcgccgc       540
     gaaattcgta ccaaaattgc tcaatttcga cgcgaatttt tggccaaaaa caacacacta       600
     atgatgccgc agccaccgta ttccccagat ctggccccct gtgacttttt cttgttcccg       660
     aaactgaaga ggcccatgaa aggacgacgc tacgctacga ttgaggagat aaagacggca       720
     tcgaaggagg agctgaacaa gatcacaaaa aatgattttt tgaagtgctt cgaggattgg       780
     aaaaaacgtt ggcacaagtg tataatatct gatggggatt actttgaagg ggacaaaata       840
     gatattcatg aataaataaa taatttttga aaaaacacaa aattcgcgat actttttgaa       900
     cagacctcg                                                               909
//
ID   Mariner-N13_SIn repbase;    DNA;    INV; 558 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N13_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-558
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 416-416 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~83% identical to consensus. ~50bp TIR.
XX
SQ   Sequence 558 BP; 165 A; 98 C; 110 G; 185 T; 0 other;
     ttaggttggt gcaaataaaa tggccgtttt tcgtatttta aactttccgc ctttgtagtt        60
     catctttttt tttatgcact atatagcgct gactgtatac catgtgaaaa gtacatgtcc       120
     cgcacgtgaa tttgtatata taactttaac ttatttacta tgatattaat tgttgaaatt       180
     cgcgtttaag tcaacatgga aaataaagaa attcgtttaa tttatttgta cgagtttaaa       240
     ctcagtcata gtgcggccaa ggcaacgcga aacattaata ctgctttcgg cgaaggttct       300
     gccagtgaaa ggacgacgag gcgttggttc gaaaagtttc ggtctggaga cacaaacctc       360
     gacaatttac ctcgcgggca tgcatcctcc gtcattgacg acgccgtttt aattttttaa       420
     agaacggcat tgatgcactt gtatcacgtt ggcagaagtg cattgaagta gatggagact       480
     attttgatta gtaaagcaag ttttaagttt gtctaaaatt taaattcaaa aacggccatt       540
     tcatttgcac caacctaa                                                     558
//
ID   Mariner-N14_AG repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   31-MAY-2005 (Rel. 10.05, Created)
DT   31-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Mariner-N14_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner; Interspersed repeat; Mariner-N14_AG;
KW   nonautonomous DNA transposon; mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-244
RA   Kapitonov V.V. and Jurka J.;
RT   "Mariner-N14_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 5(5), 122-122 (2005).
XX
DR   [1] (Consensus)
XX
CC   Mariner-N14_AG copies are ~98% identical to the consensus
CC   sequence. They are flanked by the TA target site duplications.
CC   This element forms a palindrome. Classification: a nonautonomous
CC   Mariner/Tc1-like DNA transposon.
XX
SQ   Sequence 244 BP; 75 A; 53 C; 51 G; 65 T; 0 other;
     cagggttttc caggagttct catagctgtg ggacacttta ttgactcttt cttacgtgaa        60
     atgaacttaa tgtaatggga attggactct atagcaccct tgttggacaa atccaatagg       120
     aatttccaag gagcctgtcc aaaaagggtg ccatagagtc caatttccat catatgaagt       180
     tcacttccca taagaaagag tcaaggaagt gtcccacaac tatgagaacc cctggaaaac       240
     cctg                                                                    244
//
ID   Mariner-N14_DTa repbase;    DNA;    INV; 1046 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   14-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1046
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6205-6205 (2021).
XX
DR   [1] (Consensus)
XX
CC   90% identical to the consensus.
XX
SQ   Sequence 1046 BP; 336 A; 194 C; 204 G; 312 T; 0 other;
     ggggagaagg gggctcaaat agtacaaggg caacaatagt atgtggccct agcggccaaa        60
     cggctcgttt aaattgcgcg ccgtgtttac tgaaggttcc ttagaacatc agagggctgc       120
     attaaaaatt tgagcttaaa gcgccatcag ttgaagaaat tacgaaccaa tttccgtcaa       180
     tgtcaaattc ctgaaaatcg tcccattctg ttcgggacac tttattggac attagtcgct       240
     cgcgagattt tttgaaaaaa ttattttctg aaggccaatt ttatgcccaa cgcgtttctc       300
     ttactaaata ttttgttggt cttcaatctt cgtggtattt agcaaaactt caaacattcc       360
     ttttggggtg aaaatagtag agggtactat atgataacac atggtcttta ttttatttct       420
     tatgacttct gcaggttggt agaactattg gtcatagtcg cagtattggt tgcgctcatg       480
     gtcgaatttg taggcgagag tttgatgagc cagattgcag tcaaactgag caaaatgacc       540
     taagtagcgg ttaagggcgg caaaacaaaa atttgacaac gcgaaatttt taaggaataa       600
     tggaattcta gaaatcaagg aagaaaaata ataaacttac aaaaatatgg acctccgcgt       660
     caaagagcta taaccgcatt tttaatagca aaagaaaggt tagaaaaaaa acacaacaaa       720
     tgtactccat tttagatcaa aggattagtg tccaaagagt ccaataaaat tttatgaaaa       780
     ttatctcttt taccctatac cgttaacagc gaaagtaagt ttcgtactgt tattacccca       840
     gtattggggc tagaccagtt taaaaagtat attgacattt tgcaacgttc ctcgaaggct       900
     ttgcaattga cttcaaaatg atgtaggaaa aagttatagc caaaagaaca gcctttccga       960
     tgataccagt ctcattccaa tggctcttta tttatagctg ctatgtctaa ccaaactttt      1020
     cctcctatta gtgccccctt ctcccc                                           1046
//
ID   Mariner-N14_HSal repbase;    DNA;    INV; 996 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N14_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-996
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 968-968 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 996 BP; 273 A; 217 C; 222 G; 284 T; 0 other;
     cagggtgatt caaaacaacc ttccattatt aaaagtataa aatcctgata aaattctaaa        60
     acaacttttc ctcttgcaaa attttggcaa aagcttagat tttaaattat taacaaaaat       120
     agtagaccta ttgcgggtcg ggtacgggag gtagacaggt gcggcgcaac tcaccgtcag       180
     acgtgggcgc taacgcggag tacccgcagc aatcagctga tcacactaca catgttatac       240
     actagctacg ttccaatatt cattgccagc ataaaaatct gtattttgta tctgtaacgt       300
     ggtgcgacgg atgtcttgct cggttggggt acagctcggc gtatcttcga gcagcagcgg       360
     cgacctggcc gtgacaggct ccgagtgtca atagcatgtc ataatattct tcgttcgtgt       420
     atgctgccat atcgtcttga cgttaacgct tccaataacc gcaggattat tgattaacgc       480
     atcgattgtt tcaacgcatt tatacgatcg tcgcgggatg tccattggtc catcccccac       540
     cacgcacgac cgccgcttcg cattggtcgt gcaatgaata cgagtgaatg agtgagaaag       600
     agacagaaag actcggagag accgagaacg tgcttgcatg tgtgtgcgcg tacaatcctg       660
     gctgttttcc aaaatttttg ccagttataa caatcaccta acgtcacaga aaatacagat       720
     ttttatgctg gcaatgaata ttggaacgta gctagtgtat aacatgtgta gtgtgatcag       780
     ctgattgctg cgggtactcc gcgttagcgc ccacgtctga cggtgagttg cgccgcacct       840
     gtctacctcc cgtacccgac ccgcaatagg tctactattt ttgttaataa tttaaaatct       900
     aagcttttgc caaaattttg caagaggaaa agttgtttta gaattttatc aggattttat       960
     acttttaata atggaaggtt gttttgaatc accctg                                 996
//
ID   Mariner-N14_RPr repbase;    DNA;    INV; 833 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N14_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-833
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3296-3296 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~74% identical to the consensus. Termini are not determined.
XX
SQ   Sequence 833 BP; 265 A; 131 C; 200 G; 237 T; 0 other;
     aaaagttctc ggtctgcaca gagatggcgt tgctatcaat gaaattttgt ttttgttatg        60
     ttggtacact atcgcaactt gatctgtcga atagttttct ttatacggct ttttaaagta       120
     gacgtttgtg tgtatttcgt tgaaatggat aaactggaat atcgtgcgac taaaattctt       180
     cgttttggac ggtttataac ggaaattcat ccaaagttgg tgaaggtttt aaggatcttc       240
     attttcaaca gtgaagaaat gggcggctga atttaaacgt ggtcgtactt ctcttgaaga       300
     tgatccacgt gaaggacggc ccaaaactgc aaccacagat gaaaacatcg agaaggtgta       360
     gagcaaatgc aaggtagctg acaccgtagg catatcagaa gaaagagtag tacattttac       420
     atcaagaatt aaaatggaga aagagctttg tgcaagctgc atttgttaaa tgctgaccaa       480
     aaacaaatgc gaaaacgaat ttggatgttt ccgttttaaa aagaatccaa ctgattttgt       540
     gcgccgattt gttgctgtgg atgagacggg tcagaaacag caatcaagac atgggtgccg       600
     tgtggaagaa aaagagaagt cgatttcatc tgccggaaag gtcatgccag tgttttctgg       660
     gatgcaaaag ggattctttt tattgattac cttgcaaagg gtaaaacaac tggcgaatac       720
     tgcaagtctt ctggaccaac tggatgaaaa aattcggaga agaggcctgg attgcaaaag       780
     agaaaaaaat catcttttca gagcaatgca cctgtcacaa ggtgttttat ggt              833
//
ID   Mariner-N14_SIn repbase;    DNA;    INV; 508 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N14_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-508
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 417-417 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 508 BP; 170 A; 67 C; 62 G; 209 T; 0 other;
     cagtaccggc caaaattata tcacctttcg atttttggag cataactttt atcgaagtgt        60
     atcgaatgca ctcaaaattt tatagtaaat tcttgatgaa aggtacacct cgtatataaa       120
     gtataatgag atttgacaac atacactatg atcttcgaat tttttattaa ttttttcata       180
     gttgcacttt tgtacttttt ttgtttttcg tgtcgcaatc attgttttta ccaccataac       240
     ctagttttag cagttaaatt taatattcca cattatttat acttgttatg actcaaaatt       300
     aattatgatt caaattttac atattttgga aattttaaat aaaaataatt ttccacatgt       360
     tgctgttttt attatttaat aaaaagttat tatttacgta agttatactt atcattaaaa       420
     tatattatga tttaagagag attcgtgcct tttaaaacaa attatgctca aaaataatcg       480
     aaaggtgata taattttggc cggtactg                                          508
//
ID   Mariner-N15_AG repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Putative nonautonomous Mariner DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N15_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-249
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 640-640 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 249 BP; 77 A; 50 C; 48 G; 74 T; 0 other;
     tacagggttt cccacgattt attggtcagt tcccatgatt ttttggtgcg ttcccacgat        60
     tttttggtcg tatcccatag atttttggtt cgttcccata atttattggt attttccgat       120
     tggatatcaa tacaattgga ccaaaaaatt ctgggaaacg accaaaaaat cgtgggaacg       180
     caccaaaaaa atatgggaac ccaccaaaaa ttgatgggaa ccaaccaata aatcgtggga       240
     aaccctgta                                                               249
//
ID   Mariner-N15_HSal repbase;    DNA;    INV; 2024 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N15_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2024
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 969-969 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2024 BP; 643 A; 363 C; 336 G; 682 T; 0 other;
     acaagggagc atagggaact cggaaattca aaaaattctg aaactttgtg tggaagtaaa        60
     gtagttcatc cgtaatgcaa aactattttt tgttcgtgcg gaattccagt ctgagggggt       120
     gaaaccaccc ttcgaaaaaa aaaccatttt catttttagc gtatatcttt taaaatacga       180
     ggcatatgca aaaatggttt atatgaaagt tgtagtgtat ttcatactct ttgcaactgt       240
     gtattcagat tttgcaaaat tgaaaaattt ttgaaaccct ctctccctcc tcattacttt       300
     caaaaatttt taagttgttc ttagggcaaa aataaagagc atcgtatatc aaattcatcc       360
     atatataaca atagaaactg gaagcgatta cattttttag agatagagat aattacatag       420
     agctataggc gccgcgctgt aggtaggcgc ttttgaattg cgctgtactc gataactgcg       480
     tcttgttatc gagttgatat tttcccatac tgcaagatga taagaactta atcctaatga       540
     cattgcaacg tattacataa gatatgaacg agagcagaga ttaatttgct tatgtaaaaa       600
     taataacatg tgtgtgctta attttcttca cttctttatg ttacgttcga atagctttcg       660
     aaacaaaatt caagggtgtg cgaaactctg tcgattttct cggtacactt atccattttt       720
     aaaccacgta tatttaaata aattttgaaa gctgagcgac gagaaataat tatgcggcaa       780
     taattgcaat ttcaacatat tatttttagt ttggagatca attgcaagat ctaacaccat       840
     gacagtgtca aaaatatgtt taataaaatt tgtatgtaat ctgaagctat atacatccaa       900
     tgattttatc tatatctctt ccaaggcgat acgaaaatct aatcgtcagc gtaaccttta       960
     gttgttgacg cacaacattt aatattgatt aacctttgca acttggatga tgtatgatga      1020
     caggcctgct cacggtttgc gctatcttcc cgatttcgga gacggcaatt cctcttactt      1080
     tattttgcat ctagtctcct cacaattaaa aaggatttta cgttcttcag cattcatacg      1140
     ctgtttcata cctatcctta aacgttaatt taccgttcca tcgctgtttc aaaagttgta      1200
     gcaggacgta tgaattatct agtgctgtgt gattattggt gttcatatag catactacat      1260
     gtagaacaga taagtaaaca atattgatag taatattttt tttaagagta ccattcgaat      1320
     cctaccaaga ttattatctc acgtgcaagg taagcttttg tcagcataca gagaatgata      1380
     tgtccttatc cgcagcatcc ctatcccttg gcacacacat gttactattt ttacataagc      1440
     aaattaatct ctgctcttgt tcatatctta tgtaatacgt tgcaatgtca ttagaattaa      1500
     gttcttatca tcttgcagta tgggaaaata tcaactcgat aacaagacgc agttatcgag      1560
     tacagcgcaa ttcaaaagcg cctacctaca gcgcggcgcc tatagctcta attatctcta      1620
     tctctaaaaa atgtaatcgc ctccagtttc tattgttata tatggatgaa tttgatatac      1680
     gatgctcttt atttttgccc taagaacaac ttaaaaattt ttgaaagtaa tgggaagggg      1740
     gagggggttt caaaaatttt tcaattttgc aaaatctgaa tacacagttg caaagagtat      1800
     gaaatacact acaactttca tataaaccat ttttgcatat gcctcgtact ttaaaagata      1860
     tacgctaaaa atgaaaatgg tttttttctt cgaagggtgg tttcaccccc tcagactgga      1920
     attccgcacg aacaaaaaat agttttgcat tacggatgaa ctactttact tccacacaaa      1980
     gtttcagaat tttttgaatt tccgcgttcc ctaaccttcc ttgt                       2024
//
ID   Mariner-N15_LMi repbase;    DNA;    INV; 988 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-988
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 11-11 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 988 BP; 301 A; 194 C; 188 G; 305 T; 0 other;
     cagggtgagg cacttaaaac tgtttttcgg aatatttgga aaaatacaaa tcggattaaa        60
     aaaagttgca ataaaagttg ttcacctcga agagggacat ccattaacat aaagctcgac       120
     cccctgcacc acccccgggg ggagggggag gaacccctat tttttattgc agatttggat       180
     tctccgtgaa aaaatatgta acttttgtat gaaacatttt tttcgtttca tgatagatgg       240
     cgctgtaatc ggcaaaaatg aaaattagtt gaaaaacggt aatatctcaa acaaatacac       300
     atcagattag gaaaatcaaa gtacagtttt tgatattttt gataatgcta tcatgtgaca       360
     cctcccacaa tcgaatgaag cacagactgt gatcatgctc tcagtctgtg gtcagactgt       420
     tcattgtact tcaatgattc ggactgtaca catctctacg caattgttcc acgatgttaa       480
     cgattgcaga gagagtagat atcatttcct cgtactttga ggctcataga aatgttgaag       540
     aagctcgtca aaggtatgct aatctgttcc ctgataggaa tgttccttct gcaacgactt       600
     ttcgcagtat tgtccaactg tttgctgaaa ctggaagtgt taaacctaga gaaagagtcc       660
     gatgtctatt tgttcgagat attaccgttt ttcaacaatt ttcaactcat ttttattttt       720
     gccgattaca gcgccatcta tcatgaaacg aaaaaaatgt ttcatacaaa agttacatat       780
     tttttcacgg agaatccaaa tctgcaataa aaataggggt tcctatttaa gatttcaaag       840
     tcaccccccc cccccccggg gtggtgcagg ggggtcgagc tttatgttaa tggatgccct       900
     cttcgaggtg aacaactttt attcaacttt taatccgatt tgtatttttc caaatattcc       960
     gaaaaacagt tttaagtgcc tcaccctg                                          988
//
ID   Mariner-N15_RPr repbase;    DNA;    INV; 915 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N15_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-915
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3297-3297 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 915 BP; 295 A; 152 C; 203 G; 265 T; 0 other;
     cgaggtatgt tcaaaaaata aggtgaattt tcaaatttcg cgggctacgt acattcgaat        60
     ttcgattgtc tttttttttt atgttggtac acttgtctcg aacatatttt caaagttgta       120
     gctatatagc atgtttagtt tgtatgttag aggcataaat aagacaagtg ttttgcgagt       180
     tcggcgattt tcttctgtcg aaaaaaatgg atcaacgaat ttgaatcaaa ttttgtgtaa       240
     aaaatggaat taagtgctca aaaacacttg aaatgttgag agtggcgtac ggtgagagta       300
     ctctgtgtca aaaaaatgtt tacaagtggt acaagctttt cacagaaggt cgagaagatg       360
     tgaatgacga cgctcgccct ggacgcccca gcacatcaac aaccgatgaa aatgttgaga       420
     agaatcgtcg aatcacaatt agagaagttg ctgaggttgt cggcatatcg gttggcacat       480
     gtcctgcaat ttttttcgga aattttgggc atgaagcgtg tagtagcgaa gttcgttcca       540
     aaattgctga attttgatca aaaaaaccgt cgcatgagca tcgctcagga attgttgaat       600
     gacattatca tgtctcagcc accgtattca ccagatttgg cgccctgcga ctttttcctg       660
     ttcccatgat tgaagagacc catgaaagga cggagatttg cgacgattga ggagataaaa       720
     accgaatcgc tgagagagct caaggacata ccaaaaagtg catatcagaa ctgttccgag       780
     gattggaaaa aacgctggca catatgtatt atatctgagg gggactactt tgaaggagac       840
     aaaataaaaa tcgatgaata aataaatatt ttttaagaaa aatgaaaatt caccttattt       900
     tttgaacaca cctcg                                                        915
//
ID   Mariner-N15_SIn repbase;    DNA;    INV; 700 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N15_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-700
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 418-418 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to consensus. ~200bp TIR.
XX
SQ   Sequence 700 BP; 199 A; 174 C; 152 G; 174 T; 1 other;
     catggtttgt ccggaaagta atgagaatga ttctggagaa aatactttta ttgaaatcag        60
     gttcaaatac acttagtagt tttcaaagta gtccccttga gagtctatac accgcgtcca       120
     acgttgctgc cactctccat aacagcgctg gaattcttca acggagacac tgttcaaggt       180
     cctcgtcaca gccgcagagg agtcgtccac aaggagtttg taccgatcgg acaaacagta       240
     aacgcagcat tttacgtcca ggtactcgat cgtttgagaa aaaaagtcgc gcgcgtccgc       300
     tcagaaatcc agcacacctg gatccttcat cacgacaacg cgtcgagcca cactgcgtta       360
     acggtgaggg agtttttggc tacaaagaac attccaacgc ttccacaacc accctacagc       420
     ccagacatgg ccccgtgcga cttctttctg ttccctcgca tcaaatctga cctgaaagga       480
     aaccattttg ggaccatgga aaacgtccgg ctgtgacgag gaccttgaac agtgtcttcg       540
     ttgaagaatt ccagcgctgt tatgaagagt ggtagcaacg ttggacgcgg tgtatagact       600
     ctcaagggaa ctactttgaa aactactaag tgtatttgaa cctgatttca ataaaagtat       660
     tkctccagaa tcattctcat tactttccgg acaaaccatg                             700
//
ID   Mariner-N16_AG repbase;    DNA;    INV; 1701 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Putative nonautonomous Mariner DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N16_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1701
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 641-641 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 1701 BP; 569 A; 273 C; 290 G; 567 T; 2 other;
     tacagtggcc ggcaatataa agtggccact acttacaatt ttacattttt tacatttttt        60
     ccgtgaaaaa tgaagttatt gtactgcttt attttttgaa acattgttcg tgatatgctt       120
     aagaatgcgc agtaccatag catgacaaaa atgagaagtt tgcttcaaga aaaaatattt       180
     tttccaaaat tgatcaaaat cactgtgcca aaataaagtg cccactttat tcattctaca       240
     gaaaatattt ttctgaacaa atataacacc aaacttataa tttatatgcg ttcctctcgc       300
     attctttaca tgttcgagga tctttggcgt attttttttc taatttttaa aggtttatct       360
     agttctgcat ctagtttttg catctggttc ttctcaagcg ttatcaagag ctttaaattt       420
     aaatttattt gtttgtgaca ccagttttat ccaccttcgc acatagaatc tgccacaaat       480
     tctcgatgga accaagattt agacttcatg gaggacatgc aaggtgtttt atacgatact       540
     agttgagaaa tgttttttgt attgattgtg tgtgttgaga tgttagcctg taggaacatg       600
     tttttagttt tcaaacccca tttttttaaa agaaatatcc caaagtattg atgaagaatg       660
     ttaaaaaagg tatcagccat agttgtactt tcgattcaca ccagttttcc cgctactcct       720
     aaagataaac accccctagc tatcacattg caattttcgt aatttactgc ccgttagatg       780
     tggcgtcctt caagttcctc gcccgagcta cagcaagact aacaaagcca attggcttca       840
     atatgatcaa gaacatgcag atatatcgtt agattgttga aaaactgrta tttggacaga       900
     tgagtccaaa ttagaactga tgttcaaaaa tatctagacg cgatccaaca aaccaatatg       960
     tatgaagagt gcaatgtgat gaccagggag gggatttcta tacgagaagt ggggagcatg      1020
     gtwtgaatcg acggcataat gaaagctaat acctatataa gcatcctgtg tgaatttatc      1080
     tgttttctgt gaaaaatacg gagttagtaa ataaattgat gttacaacag gaagacgact      1140
     caagttatac acgaagaatt ttttaatttt tttttttcaa tcaaatcgaa taaaacttct      1200
     ttaatggctc ccacttagtc ttaactttaa tcctatcgag atttcgtgtg caaattttga      1260
     tgcaaatgtg gtgagaatga cgtgattagg aaaaacaaaa tatgttaaag ctctgaaata      1320
     ctcctaggaa gaacaaatgc caaatatgtg caaataaaaa caaaataaat tatgtcaaag      1380
     atcctcgaac atgtaaagaa tgcgagagga acgcatataa attataagtt tgatgttata      1440
     tttgttcaga aaaatatttt ctgtagaatg aataaagtgg gcactttatt ttggcacagt      1500
     gattttgatc aattttggaa aaaatatttt ttcttgaagc aaacttctca tttttgtcat      1560
     gctatggtac tgcgcattct taagcatatc acgaacaatg tttcaaaaaa taaagcagta      1620
     caataacttc atttttcacg gaaaaaatgt aaaaaatgta aaattgtaag tagtggccac      1680
     tttatattgc cggccactgt a                                                1701
//
ID   Mariner-N16_LMi repbase;    DNA;    INV; 863 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   11-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-863
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 12-12 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 863 BP; 286 A; 146 C; 135 G; 296 T; 0 other;
     cagggtgatt cacgaagata tgcaaatatt ttaatatgtt attctacaag taaaactaaa        60
     gaaaaaagtt catataaaca taggtccgca aatgtttagt tacggagtta cggctaataa       120
     aagattttgc ctgaaattta gcaacctcgc taatatgaag ccatcgcaaa actgtacgag       180
     gttaaagtaa agcacgattt ccatttattt tgttgttatt gatctggtga atctaataaa       240
     acatgtccca gacgtgtatc tgcagtagtt ttccagaaat tccagagatt atacaagtaa       300
     atgagtttac tttccattaa gagttggcaa ccgtacaact ccttaaccga ctgagctttg       360
     tttattttcc ggtttaacat gaattcacgt gtgctatggt attaataaaa gcagattatc       420
     tgacacattc atacagtttt agttaacttt attaccatca ttttccaaaa ttaaattctc       480
     tacaacttct gttgaaaact ttgtgcaatt gtctggaatt aaaaaaaaag gccaagtagt       540
     taataaatta caaattttcc caaattattt ctttgcttct ctggaatttc tggaaaacta       600
     ctgcagatac acgtctggga catgttttat tagattcacc agatcaataa caacaaaata       660
     aatggaaatc gtgctttact gtaacctcgt acagttttgc gatggcttca tattagcgag       720
     gttgctaaat ttcaggcaaa atcttttatt agccgtaact ccgtaactaa acatttgcgg       780
     acctgtttat atgaactttt ttctttagtt ttacttgtag aataacatat taaaatattt       840
     gcatatcttc gtgaatcacc ctg                                               863
//
ID   Mariner-N16_RPr repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N16_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1303
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3298-3298 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 1303 BP; 424 A; 221 C; 203 G; 452 T; 3 other;
     cagttgagga cagtcatatt catacaccag ggttttgttt ctttatctgt ctttatttta        60
     tttttggtga gtcaaggwga acaaataaca ctcacatatt aagtaaaatt ttatttttca       120
     caatataaca cttttttcaa ttcataaact gtaaaaattt agccaaaata ggtaattgtt       180
     tcgaaataac tccgtcacca acgagacttt catattcata catttgcaac aataaacatt       240
     tcttgatcat aaaaaaaaaa ctcaatattt tgttgggtag tcttttctct taattacttc       300
     agataacctc ctaggcatcg actcaacaag tttcttggtg gtttccggag taatgctgta       360
     ccattcttca attgctttct ccttcagctg acttgcattt tggatctgat gatttttcaa       420
     ttttttttaw actctgccca caaatgctcg attggattta gatctggtga ctgtgggggt       480
     attgccatca ctttgggaca attatataat agccattctc tggttttaac ggccttgtgg       540
     ttgggatcat tatcctgata gaaaataaaa ttcctttcaa ttcccaaatt tttgaccgat       600
     tcttttaaat tttttcttaa aatatctacc tacttctcag cattcataat gccgttgata       660
     aattgaattt tccctaccat agaagccgag aagcacctcc aaatcatcac agatccacct       720
     gcaaactgta ctgtctgttg aagattcttt acagaaaggc tttcatgtct tttcctccaa       780
     acttaactgt ttccatcgca ttgaaaaatg ttttatttac agatgaaact aaaattaaca       840
     tttttaagcc aatcgagcat ttgtgggcag agtttaaaaa aaattgaaaa atcatcagat       900
     ccaaaatgct agtcagctga aggagaaagc aattgaggaa tggtacagca ttactccgga       960
     aaccaccaag aaacttgttg agtcgatgcc taggaggtta tctgaagtaa ttaagagaaa      1020
     agactaccca acgaaatatt gagttttttt tttatgatca agaaatgttt attgttgcaa      1080
     atgtatgaat atgaaagtct cgttggtgac ggagttattt cgaaacaatt acctattttg      1140
     gctaaatttt tacagtttat gaattgaaaa aagtgttata ttgtgaaaaa taaaatttta      1200
     cttaatatgt gagtgttatt tgttctccct gactcaccaa aaataaaata aaaacagata      1260
     aagaaacaaa amcctggtgt atgaatatga ctgtcattaa ctg                        1303
//
ID   Mariner-N17_AG repbase;    DNA;    INV; 669 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Putative nonautonomous Mariner DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N17_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-669
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 642-642 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 669 BP; 194 A; 118 C; 133 G; 220 T; 4 other;
     tacagggttt tccattccaa ttaacaactg tccacagtct actagcaatc ctcgatttga        60
     aaaacacgat tgtctaccac ttacaaacaa gtcaagccgt ttttggtaca ctgtccattt       120
     caatttcaca attgtcgtct tcgaaaacac acgtcagatg cggcacggtt tgtttgggtt       180
     gttttggttt tggctggaac gtgtatcact tgtctgtaag aattgaacca tgttgtaaac       240
     aggtcttgat tgaatatcag aatatgggaa agctgagcaa twtggacatg ttaaacagtt       300
     ttatcatttg rttttagtta ttttgaatcg ttacagtttt taagttattt tgggacgttg       360
     taattttttt tcagctacaa gtaaaagcac cgataaatgt caacatttct gcattgtttg       420
     aaagattaaa gtatacataa aatgcctaca tgtccatttg ctcagcgtcc taacaacaag       480
     tgatacacgt tccagccaaa cccgtgccgc atctgacgtg tgttttcgaa gacgacaatt       540
     gtgaaattga aatggacagt gtaccaaaaa cggcttgact tgtttgtaag tggtagacaa       600
     tcgtgttttt caaatcgarg attgctagtw gactgtggac agttgttaat tggaatggaa       660
     aaccctgta                                                               669
//
ID   Mariner-N17_HSal repbase;    DNA;    INV; 1075 BP.
XX
AC   .
XX
DT   23-APR-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N17_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1075
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 970-970 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1075 BP; 284 A; 255 C; 245 G; 291 T; 0 other;
     cagggtggtc cattttaatc gacaatcgga aatatttcgt caggtaagcc agatcgcgaa        60
     aaatgtttca aacaaaagtt gtagggttca gagggggaca tctgacggtg accttggctt       120
     gaccttggat tgtcgtttga aggtcacgta aaggtcaact ttaaaatcct aaatggaact       180
     ccccattttt tattgcatat tcttgtagcc cttgtcgaga cgttttcaaa acactaccta       240
     cttttgtctt ttgcgtaagc cattcccaag atatgaagct tcaaagttga cataccgccg       300
     gcattcgcat tacccgatgt acaccgcggg gaggttgctc ggtcggattt gtacatcata       360
     gtttactttc cttcgggaat cacctcgatg ccactttccc tcatcgatgg ataggtcggg       420
     atggtccaat ttggtggcca ccaagatcac ccgaccttac tcctccggat ttttatctgt       480
     ggggattttt gaaagacgca gtgtttcgtc aaccgccaac gacgcggcag gatatgatgg       540
     atcgcatcag aaatgcgtgc cgagcgattc cagcaaacgt tcttctgaaa ctcgtcgaaa       600
     gtttcgaaaa gcgagttcga gtgtgccgag ctgtcgatgg cggcgttttc gaacatctat       660
     gatgaatgag ccccccccca cacacacaca caaaatcggc cctttttagg gccactatga       720
     tgtacaaatc cgaccgagca acctccccgc ggtgtacatc gggtaatgcg aatgccggcg       780
     gtatgtcaac tttgaagctt catatcttgg gaatggctta cgcaaaagac aaaagtaggt       840
     agtgttttga aaacgtctcg acaagggcta caagaatatg caataaaaaa tggggggttc       900
     catttaggat tttaaagttg acctttacgt gaccttcaaa cgacaatcca aggtcaagcc       960
     aaggtcaccg tcagatgtcc ccctctgaac cctacaactt ttgtttgaaa catttttcgc      1020
     gatctggctt acctgacgaa atatttccga ttgtcgatta aaatggacca ccctg           1075
//
ID   Mariner-N17_LMi repbase;    DNA;    INV; 891 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   11-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-891
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 13-13 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 891 BP; 271 A; 176 C; 173 G; 271 T; 0 other;
     cagggtgtaa attttaagtt gacaaaccag aataactcga aaaataagct tcacacgaaa        60
     aaatgtgtag aatccaaagt tgattatttt cgagggggac atctgctggt gctaaaatta       120
     gcccgccacc ccagccccct gggggtgggg cgggaggcaa ctttaaaatt tcaaatggga       180
     acccccattt tttattgcag aatcagattc tacataaaaa actacgtaca ttttgtctta       240
     aacatttgtt ttgattcttg gtagttggcg ctgtaattca agaaaatcca tgttctcatt       300
     tttgcgtgga aaatggttac ggataaataa aaaatactta tttacttcgt aaattttgat       360
     tcgctaaaac taaaactctc cctctctccc catagggtgg ggttttgctc gctaccagtc       420
     gcgtttgacg cggagttagt attgctaggc gggattgggt catagaattc taattctgcc       480
     tagcaatact aactccgcgc aaacgcgacg tacgagcaaa ccccacccta tggggagaga       540
     gggagagttt tagttttagc gaatcaaaat ttacgaagta aataagtatt ttttatttat       600
     ccgtaaccat tttccacgca aaaatgagaa catggatttt cttgaattac agcgccaact       660
     accaagaatc aaaacaaatg tttaagacaa aatgtacgta gttttttatg tagaatctga       720
     ttctgcaata aaaaaatggg ggttcccatt tgaaatttta aagttgcctc ccgccccacc       780
     cccaggggga tgtccccctc gaaaataatc aactttggat tctacacatt ttttcgtgtg       840
     aagcttattt ttcgagttat tctggtttgt caacttaaaa tttacaccct g                891
//
ID   Mariner-N17_RPr repbase;    DNA;    INV; 1487 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N17_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1487
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3299-3299 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1487 BP; 484 A; 258 C; 260 G; 482 T; 3 other;
     cagggtgtcc caagctatat ggataacgac tttttctcgg aaactaagat agctagaaaa        60
     aaactaaaaa atacgtgttc ccttagtttt ttgttaggaa tccaaattta ctttgtaaat       120
     ttttttcggt gcttccagaa gcgagataca ggcaccaact tcattttttc aaatgggaag       180
     gtgcggtttt tatttcagaa atagattcct ctattttttt taaagaaaaa tttacttgaa       240
     cggttttttt ctgtgagcga tattttagaa gttatgaatg aaaacatgat tcttataaga       300
     aatktcaaaa tgataatatt ataacggttt tttgattgaa taagaagaaa agtactattt       360
     tattataaat tttactcctc attaatatta cagatcatgc tcgaatggcc tccaccatta       420
     gagatgcata gacatgctct ttcctgccaa ttgcccctta ctgccaaaga agtasattcg       480
     gctttaaccg asttacaggc atctattatt ctctgcttta gttcatctac agatgcaatc       540
     ccggcttgat tctgatacac ctagatttag aaatgctttt agataagcag aaataaggaa       600
     agaaagaaaa aagttatgaa taatcacctt gtttttcagg tatccccaaa ggaaatagtc       660
     cataggtgtc aaatccggtg aacgaggtgg ccactgaatc gcccccgtgt cgatataaca       720
     ccatcaggca tgtaaagaga tatctcgata ggcaatttga tgggcgtgtt atatcgacac       780
     ggggggcgat tcagtggcca cctcgttcac cggatttgac acctatggac tatttccttt       840
     ggggatacct gaaaaacaag gtgattattc ataacttttt tctttctttc cttatttctg       900
     cttacctaaa agcatttcta aatctaggtg catcagaatc aagccgggat tgcatctgta       960
     gatgaactaa agcagagaat aatagatgcc tgtaactcgg ttaaagccga atctatttct      1020
     ttggcagtaa ggggcaattg gcaggaaaga gcatgtctat gcatctctaa tggtggaggc      1080
     catttcgagc atgatctgta atattaatga ggagtaaaat ttataataaa atagtacttt      1140
     tcttcttatt caatcaaaaa accgttataa tattatcatt ttgacatttc ttataagaat      1200
     catgttttca ttcataactt ctaaaatatc gctcacagaa aaaaaccgtt caagtaaatt      1260
     tttctttaaa aaaatagagg aatctatttc tgaaataaaa accgcacctt cccatttgaa      1320
     aaaatgaagt tggtgcctgt atctcgcttc tggaagcacc gaaaaaaatt tacaaagtaa      1380
     atttggattc ctaacaaaaa actaagggaa cacgtatttt ttagtttttt tctagctatc      1440
     ttagtttccg agaaaaagtc gttatccata tagcttggga caccctg                    1487
//
ID   Mariner-N18_AG repbase;    DNA;    INV; 710 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Putative nonautonomous Mariner DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N18_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-710
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 643-643 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 710 BP; 223 A; 125 C; 127 G; 226 T; 9 other;
     tacagggttt acctagccaa tcgggcgtcg tcaaagcgtt atcggtcgcc gtaaatactt        60
     tttcgggcga cgtaaaccct caattgggca ctgtcatttc tattcgggcc ttgtgaagta       120
     tgaatcgggc aaagtacaga atgaatgcgg cctactttat attttgttgc tttctagctg       180
     taaaacaata cttttttgcg agtagtttaa ctgatatgta agaaaattca ctatttttaa       240
     gtttaattac ataaaaaatt attcaaattc cttttttaaa atttttaatt caaacccgta       300
     caatgcaatt tggttttttt ttaaatatat attataaaat agtgcatttc taaactatgt       360
     ccgattcata cttyacaagg yytgaataga aatgacagtg cyyaattggt gatttaaktg       420
     aaaaagtatt tatggtgaty aacattttaa cgaattgact acataacntg taagttaaac       480
     aacatgcaaa atacgtattt ttaaacaact tgatggatca aacacaccgr agcgaccgat       540
     ttgacacctt caagagtagg acgctttcat tctgtacttt gcccgattca tacttcacaa       600
     ggcccgaata gaaatgacag tgcccaattg agggtttacg tcgcccgaaa aagtatttac       660
     ggcgaccgat aacgctttga cgatgccgga ttggctaggt aaaccctgta                  710
//
ID   Mariner-N18_HSal repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N18_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-951
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 971-971 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 951 BP; 278 A; 186 C; 182 G; 305 T; 0 other;
     cagggtgcac gatttatctg aagacattga aatatctcga gaactatgca ttggataaaa        60
     aaaagtggtt aatgaaagtt gttagtctcg aagggggaca tccaatgata ccaaactcga       120
     cctcccaccc caccccctgg gggtgggggt tgggggcaac tttgaaatct taaatggaaa       180
     cccccatttt ttattgcaga tacggattct acgccacaaa atacgtaaat tttgtccgaa       240
     actttttttt tgattcgtga tagatggcgc tgtaatcgca aaaaattata ttttccgcaa       300
     ttctccagaa atgatcattg gattgagaaa taaaaaatac ctgttcaata tttttaaaga       360
     acataataaa agttatttca ttttttatag ttttatagtt tttttatagt tatttatttt       420
     atagtgagct ctgaccgcat tgcactgcct tttataataa gccgtagttc gccatacacc       480
     cacagtggcg cgtcgagcag ttccctcttc gattcgggtt cccatttgag atttgaacgt       540
     taccacccac cctaccccga gaggatgggg ggggaataac ttttattatg ttctttaaaa       600
     atattgaaca ggtatttttt atttctcaat ccaatgatca tttctggaga attgcggaaa       660
     atataatttt ttgcgattac agcgccatct atcacgaatc aaaaaaaaag tttcggacaa       720
     aatttacgta ttttgtggcg tagaatccgt atctgcaata aaaaatgggg gtttccattt       780
     aagatttcaa agttgccccc aacccccacc cccagggggt ggggtgggag gtcgagtttg       840
     gtatcattgg atgtccccct tcgagactaa caactttcat taaccacttt tttttatcca       900
     atgcatagtt ctcgagatat ttcaatgtct tcagataaat cgtgcaccct g                951
//
ID   Mariner-N18_LMi repbase;    DNA;    INV; 728 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 20.01, Created)
DT   24-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-728
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 14-14 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 728 BP; 180 A; 160 C; 196 G; 192 T; 0 other;
     cgagggccat ccggaaagtg gtacccgtta gcgccgcatt aagcgctgac gactcgggta        60
     gccgctgggc agggtcagac cgcgtcagtg gcatgtgtgc ctgctctgtg cgaggttgcg       120
     tgacgctgtg tgttgcctgt gttgtgtctg tgatcgttta taatgtttaa acaaattgag       180
     aaccccgcca gttgcgaagt gagggccgtg attaaatttc ttaatgcacg aaacgttcga       240
     ccttgtgaaa ttcatcgcca attaaaggag gtgtatggag acaatgtgat ggacgagtca       300
     tctgttcggc gctggtgtcg caacttcaac ctggggaggg ggaatacaca cgacgaggag       360
     cgttcaggga gaccatctgt cattacagac caactgcctt cgaccatcca ccatatagcc       420
     cggacttggc cccttcggat tttcatctct ttccgaagct taaagacttt ctggcgggaa       480
     aaagatttga cagcgatgaa gaacttaaac gaggcgtgac tacgtatctc aatacgctgg       540
     cggcggagga ctatgacgct gggatacaaa aactcgtcac acgttatgac aaatgcctaa       600
     atttgcttgg agattatgtg gagaagtagt gtaatgtatg ctctttccaa taaaaatgtt       660
     tatatgtgtt aatatttact cctgtgtctt tattgcacaa acgggtacca ctttccggat       720
     ggccctcg                                                                728
//
ID   Mariner-N18_RPr repbase;    DNA;    INV; 876 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N18_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-876
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3300-3300 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus.
XX
SQ   Sequence 876 BP; 226 A; 209 C; 190 G; 251 T; 0 other;
     ctacggtaaa tcaaatataa acggtaattt tgctattctt cttagagtgc aggtcctacc        60
     tagataatgt tgtgtggagt agatgtttgg tttatgagga gtgggggaac cggtctggtt       120
     agcgttcaag gtcgccattg ccgtcagtac agccatgacc gagcaagagg tcccttcgtc       180
     tgttgcgcag cggattatca taaagttttt aatcaatgaa ggcgttaaac cgtcggaaat       240
     tttaactcgt ttgcgggcac agtttgggga cagtacactg tctcagaatc gtgtgtttgc       300
     gtgggcgacc tgacctgttt ttggttttca gtcaacaacc tcggaaccca tcgagcacta       360
     atttttctga aaccgagttg atcagtgatt atggattgaa cacttccata gctgatactc       420
     acttctgatg aaatttcttc cacggttaac cggcgatcac gttcaataag ctctcgaacg       480
     gcacgaatat tgtcatctgt aaggcttgtc cttgggcgtc gatcatgact ttcgttttca       540
     acccgttctc gtccgccctt aaattctctc gcccacgcaa acacacgatt ctgagacagt       600
     gtactgtccc caaactgtgc ccgcaaacga gttaaaattt ccgacggttt aacgccttca       660
     ttgattaaaa actttatgat aatccgctgc gcaacagacg aagggacctc ttgctcggtt       720
     atggctgtac tgacggcaat ggcgaccttg aacgctaacc agaccggttc ccccactcct       780
     cataaaccaa acatctactc cacacaacat tatctaggta ggacctgcac tctaagaaga       840
     atagcaaaat taccgtttat atttgattta ccgtag                                 876
//
ID   Mariner-N19C_HSal repbase;    DNA;    INV; 746 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19C_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-746
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 972-972 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 746 BP; 228 A; 117 C; 121 G; 280 T; 0 other;
     gggtgaccat atgtactctt ttaagagtat atgtactctt tttaaggtgg taaaaagagt        60
     actctctact ttttacgtat cgtactcttg tatatactct tttttcgtaa tgttaattat       120
     actttgtcga tataaatgac cagagagcag acttcggtga cgtttttgtc actcacagca       180
     tttgagcgcc gcgagcgcca ataccgatta tgcgtagagg ttctgcgcaa ctaccgagcc       240
     acaatgcaaa cgtagaaaga gttttcagta tgatgaacgc tcaatggact gatgaaagaa       300
     ataggtttac tgttgactcg gtaaaaagtt tattaatggt taaatataat tataaagaat       360
     ttaattgttc tgaattttac gattattgtc taaacaataa gaaattgtta agcgatgtac       420
     ggagtagtgc aaaatataat tataaaatat cttaataata taataaaata tatgtgtccg       480
     actaatattt ctcggtttat ttagtaccca ctatgtttta ttttaaatat tgtacctagt       540
     aatccattga tcattgtccc agataaaaca caaaatcatt ttgacgtcaa aatgacataa       600
     tttttatatt atttgacgtc accttgactt ttatatgatt ttgtgttcta cttactgtac       660
     tcttttggga ccgtaattag tactctttta tacacttttt tttacccgtc ttttactctt       720
     tttttatgac tgggatatgg tcaccc                                            746
//
ID   Mariner-N19_AG repbase;    DNA;    INV; 725 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Nonautonomous Mariner DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-725
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 644-644 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
SQ   Sequence 725 BP; 190 A; 166 C; 188 G; 181 T; 0 other;
     tacagggtgt gcgggctaaa tttgacacct ggcctttggg tttatatctc agggttgagt        60
     tgacgtatcg aaatgattga tatgtcattc gattgctaaa agttgtgcga acaagtgtaa       120
     aaaatgtcta gctccgtaaa tatgtggaac ccgtccgaat tgtacaagcg cgtaacgtgt       180
     gttatgatgg ttcgtgccgg ccatacgaat gccgaaattc ggaaggcggc gatgtgttcg       240
     ctgaacaccg taaaaacaat acggtggcca atgggcggcc gtacgtttgg cagcaggatt       300
     ctgcaccatg ccatacggcc gtaaaaacac gccaatggct cactgccaat ttcgaccgat       360
     acaccagcac cgacgtttgg ccacccagct cccctgacct taatcctatg gattactttg       420
     tgtggggcac agttgagcgg gacaccaaca gggcgtcctg caataccaaa gcggagctgg       480
     tggccagaat aaaggccgtg tttgcggcca tccccagaga catggttgtc cgggcttgcg       540
     cgcggttccg gaagcgggtg caggcggcca tcgacgcgga gggggggtac ttcgaataaa       600
     ataaatgcgg caaacatggt aagctaaact ttgtagaatt ttttttttaa tatttaacat       660
     aaatttgata aaaattcctt tcctattccc tcagaaactg tcaaatttat ctcgaacacc       720
     ctgta                                                                   725
//
ID   Mariner-N19_HSal repbase;    DNA;    INV; 1189 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1189
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 973-973 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1189 BP; 359 A; 217 C; 217 G; 394 T; 2 other;
     gggtgaccat atgtactctt ttaagagtat atgtactctt tttaaggtgg taaaaagagt        60
     actctctact ttttacgtat cgtactcttg tatgtactct tttttcgtaa tgttaattat       120
     actttgtcga taatgaccag agagcagact tcggtgacgt tttcatcact cacagcattt       180
     gagcgccgcg agcgccaata ccgattatgc gtagaggagg ttctgcgcaa cggtgcmccg       240
     ctagttcact acgtaggcag tctgaaaagt tctcsacctg acacatacat ggcattagaa       300
     actgtcaaac tataattgta ttggaaagtg gcatctctga tataaactga tataaaccca       360
     tgtaaaattt tattcgatct gtcaagtcat tcgagtagta gcaccagtag agaaagcttt       420
     gtgcaagatg ggtgccgcat ttgctaacaa ttgaccaaaa acgcattcga atgcgtattt       480
     ctcaaacgtg tttggatcgt tttaagcaaa ataaaatgga tttcaagcgt cgtttcataa       540
     ctgttgatga aacttggatc caccactata caccagagcg aaaagaacct tccggaatca       600
     cactttaatg atattgaatt attggaaaaa cgttggaata tatgtattga agtttcagga       660
     gattatattg aaaaataaaa catatttcac ggcaaaaaaa ttttctttca ttgttaggcc       720
     gagaactttt cagactgccc tcgtataaat cgtgcagcac aatcgacact ggcgcgtagc       780
     gctctggcgt tgtgagtgcg gaaaacggcg ctgatgtccg ctctttggta acgacacagt       840
     gaaaaccgaa attgtcaggc gatgtacgga gtgcaaaata taattataaa atatcttaat       900
     aatataataa aatatatgtg ttcgactaat atttctcggt ttatttagta cccactatgt       960
     tttattttaa atattatacc tagtaatcca ttaatcactg tcccagataa aacataaaat      1020
     cattttgacg tcaaaatgac ataattttta tattatttga cgtcaccttg acttttatat      1080
     gattttgtgt tctacttact gtactctttt gggaccgtaa ttagtactct tttatacact      1140
     ttttttaccc gtcttttact ctttttttat gactgggata tggtcaccc                  1189
//
ID   Mariner-N19_LMi repbase;    DNA;    INV; 892 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 20.01, Created)
DT   24-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-892
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 15-15 (2015).
XX
DR   [1] (Consensus)
XX
CC   >76% identical to consensus.
XX
SQ   Sequence 892 BP; 222 A; 190 C; 235 G; 245 T; 0 other;
     cagggtgatt ccgtgatatg ttacaaactt tcagggatga tggagaaggg taaatgtatt        60
     aattgaggta agggcctggt acgaagcgag tcgaaagtta taagcgaaaa tcgttctgat       120
     acctctgaca gtggatctgc accggtactg ttgttgctaa gttagggtag cagttcctag       180
     aacatatccc ttctcaacaa tgtggttcca acatgatgga gccccaacct cactttggac       240
     tgagggttcg tgaacacctg gatcagacat tccctgaaaa gtggatagga agaggaggtc       300
     ctgtttcgtg gccagcacgt tcacctgatc tcaccccact tgatttcttc ttgtggggcc       360
     atgtgaaaag tcttgtgtac gagacgcctg tcgagactga agaggatctc ctggcaagaa       420
     ttctcgctgc ctgcgacact gttcaaacga caccggggat attagaacgg gtacgacaga       480
     actttgtgcg acgatgccat gcactgcgct gggggacgcc attttgaaca actgttgtaa       540
     atgtagcagc ttgtggaact tgtgcaggta aatggaattc attattactg taccgtagac       600
     ttaggatttt cggtctctct gacatcaagt tacgtgcgcc gttactagtc catcaacagg       660
     ggaaattatt gagggtattg gggagtattc agcgggaatt ctgtacgtca gatcagggtt       720
     cggaagttgg ggcccttagt ttgagcactg tgcgaggtaa ggcggaactt gagtagattt       780
     tcgcttatac ctttcgactc ggtcgtttcc ggactagggt cccttacctc aaattgatac       840
     atttaccctt ctccatcatc cctgaaagtg taacgtcatc aggaatcacc tg               892
//
ID   Mariner-N19_RPr repbase;    DNA;    INV; 1596 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   25-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N19_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1596
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3301-3301 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1596 BP; 563 A; 271 C; 292 G; 470 T; 0 other;
     cagtggcggc aaaaagtatt tgcacaccaa ttttttcttt aaatttttga atttaagtga        60
     taaaaaattt cggttaactt tacaaattaa aagtatccta attccttatc aaatccctgt       120
     gtaaatataa tctaaaactt ctaccataat gaaacaaaaa ttaaaaataa cataaacata       180
     cggaaaaaag tatttgcaca cattgattat agaattccaa aggtcgttca ctagttattg       240
     ttgttattat tttctttccc tcagtattct aaactgtgat tgaatgtttg aaactcttta       300
     taacttgtga taaattgata atgccaaaag aaggggaatt aagtgtcggc acccgcgaaa       360
     aagttatttt actacggagt caacaaaaat catatcggga aattgctgat ttcttagggc       420
     tgaatttctc tactgtaaga tacgttataa agggatatga ggaacgaggc acaacagaaa       480
     acagtaaacg caaaggtcgt ccgaagaagt taaatggtag aatgaagaga aaaataaaac       540
     atgaagctca tgaagaatcc aacgataagc gcacaggctc tagctgatat ggtgcaatca       600
     acttctggtg tccgcgtaag cgaaaggaca ataaggaatg ctttgcattc tgacggtctc       660
     cacggtagag cgccaagaaa gaaacctttc atcagcgaaa cgaaccgcaa aaagcgactt       720
     gcttttgcca gagaattacc taaagaagcc cctctgtttt tgggaaaatg tagtgttctc       780
     tgacgaaagc aagttcaatt tgtttggatc tgatggtcgt aggacaatct ggcgtagacg       840
     taatgaggaa ctgaagaagc aaaatgtttc cgttacagtg aaacacggag gcggacatgt       900
     aatggtgtgg ggatgtgttg cctataatgg ggtaggaaat cttgtaccta tcgagggtaa       960
     tttaaatgca gaaggttacg tgaacatttt gcgccgtaac cttaaagcaa gtgcagcaaa      1020
     tttgggaatc cagcaccagt tcatttttca attgacaacg atccaagcac actgctagta      1080
     aaactaagga gtggttaata tttaacgttc cgagacagct gcccacccct ccacagtcgc      1140
     cagacttgaa tattattgaa catttatggc acatactgga tcaaaacgtt agaaaacacc      1200
     aaatcatcgg aagacaccac ctaaaaaatc ttttagtcga agaatggaaa agaatcaatc      1260
     cagatttaat taaaaattta gtccactcaa tgcccagacg tttacaagca gttatcgatg      1320
     ctcaagcact ttttacaaaa tattaacagt gaataaaata aataaataaa gcctacacaa      1380
     atggaaaact ataatgtgca aatacttttt tccaacagtt tatgtaagtt tctctttcta      1440
     ttttactatg acagaagatt ttttatttta tttattcaaa tatttggtca gttttaaata      1500
     tactttttat tttgtgcagt taactgaaat tttttattac ctaaattcat tattttaaga      1560
     aaaaacttgg tgtgcaaata ctttttgccg ccactg                                1596
//
ID   Mariner-N1B_AAe repbase;    DNA;    INV; 1584 BP.
XX
AC   .
XX
DT   31-DEC-2018 (Rel. 26.01, Created)
DT   31-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1584
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1584
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 162-162 (2021).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 1584 BP; 468 A; 322 C; 321 G; 473 T; 0 other;
     cagtgagagg caaaataaag tgcccacctt accagttttc gaatttctct cattgatttg        60
     gttcaaatta aagttaacac acctaaatct tttgtgatat tttatttttg atgttctttt       120
     aaagttgcac ttacgaaatt ttgataaaaa aaagaatttt acttaaagaa aaagaaaatc       180
     aatttgtatt gaaaaaaaag tagtgacaaa aataagtgcc cacttccttc ttggccccag       240
     aaaagatgat ttaagaaaaa taaaaagcaa tttaatagtt aatgtgtcct cctttggcct       300
     taaggacttg ctggaggctc ttcggcatgc ttttcaccag gttttgtagg tgttgtggat       360
     ctagttcttc ccaggcgcgc tccaaggctt caaaataatt atttttgttg gtaacaccag       420
     ttttttcaac cctggcatcg agaatcgccc acaaattctc gatggggttg aggtctgggc       480
     tttgtggagg ccattccagc ggtttaatcc gacaagaccg gaaaaaagac ttggtcttct       540
     ttccagtatg cttcgggtcg ttgttctaga gaaatatgaa tttctcttca aggcccgtct       600
     ggatcagcga aacctccaga ttttccagca agatgttaat gtaggaatct gccatcatta       660
     ttccgtcgat tttcacgagg ttttctactc cactccatga aaaacacccc cagaccatca       720
     catttcctcc tccatgcttc accgttcctt ggatgtggtg ctctgcatca cacacgagcc       780
     cgccgctctc ggttagacag ctcgagcttc aggagcgcca catccaagga acggtgacgc       840
     atggaagtgt gatgtgatga aatgtgatgg tctgggggtg tttttcatgg agtggagtag       900
     gaagcgtcgt gaaaatcgac ggaataatga cggcagattc ctacattaac atcttgctgg       960
     aaaatctgga ggtttcgctg atccagacgg gccttgaaga gaaattcata tttctctaga      1020
     acaacgaccc gaagcatact ggaaagaaga ccaagtcttt cttccggtct tgtcggatta      1080
     aaccgctgga atggcctcca caaagcccag acctcaaccc catcgagaat ttgtgggcga      1140
     ttctcgatgc tagggttgaa aaaactggtg ttaccaacaa aaataattat tttgaagcct      1200
     tggagcgcgc ctgggaagaa ctagatccac aacacctaca aaacctggtg aaaagcatgc      1260
     cgaagagcct ccagcaagtc cttaaggcca aaggaggaca cattaactat taaattgctt      1320
     tttatttttc ttaaatcatc ttttctgggg ccaagaagga agtgggcact tatttttgtc      1380
     actacttttt tttcaataca aattgatttt ctttttcttt aagtaaaatt ctttttttta      1440
     tcaaaatttc gtaagtgcaa ctttaaaaga acatcaaaaa taaaatatca caaaagattt      1500
     aggtgtgtta actttaattt gaaccaaatc aatgagagaa attcgaaaac tggtaaggtg      1560
     ggcactttat tttgcctctc actg                                             1584
//
ID   Mariner-N1B_LMi repbase;    DNA;    INV; 926 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 20.01, Created)
DT   06-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-926
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 76-76 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 926 BP; 283 A; 170 C; 173 G; 300 T; 0 other;
     caaggagacc acatgggtat cggattttag aattttttga tatttatggt acgtgaagtt        60
     cagaactcaa ataacaatca gccaaagcca ttcgacgcaa ctctcaaaaa ttctcgagaa       120
     aatcgacttt gaagttttgc aagtaagcgt aagtaccaat cattaaatga attgcagcat       180
     ctgtcggtgt agctcaggtg gtagcgttct ggccttacaa ccctagggtc ggtggttcga       240
     atcctgtcgt gacagatttt tttcgttgtg ttcgaatact tacacaattt taatatctaa       300
     tggtaatttt tacgaaaagt gcacgtattt ttgtttattc gtaattttct atattttata       360
     gaaggttgtt aataatgatg gtttcaataa aaaaaacata agttacattt tttacagtat       420
     tggcttcact attagttgac gacggtagtc tttgattgtt cagtttgtga agagctacga       480
     cactgttttt ggaaagtcat ctccatagct actaatggct ttccaagcag ctaacctact       540
     caaccatcgt tttacgtgac gacaaggttt tcagctcgtc tacatacaca taaacaaaaa       600
     ctgacacaac acgtggaatt agagatccca aaatgtttta tataactgaa ttcgaaaaca       660
     aaaaaaatat ctgtcacagt gggattcgaa ccaccgactc tatggttgtg aggccagaac       720
     gctaccacct gagctacacc gacagatgct gcaactgttt taattattgg tacttacgtg       780
     tactttgcaa aacttcaaag tcgattttct cgagaatttt tgagagttgc gtcgaatggc       840
     tttggctgat tgttatttaa gttctgaact tcacgtacca taaatataaa gaaattctaa       900
     aatccgatac ccatgtggtc tccttg                                            926
//
ID   Mariner-N1_AAe repbase;    DNA;    INV; 1158 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1158
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1287-1287 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TA TSDs. 405-bp TIRs.
XX
SQ   Sequence 1158 BP; 352 A; 225 C; 208 G; 373 T; 0 other;
     tacactgata ggcaaaataa agtgcccacc ttaccagttt tcgaatttct ctcattgatt        60
     tggttcaaat taaagttaac acacttaaat cttttttgat attttatttt tgatattctt       120
     ttaaagttgc acttacgaaa atttgataaa aaaaagaatt ttactcaaag aaaaagaaaa       180
     tcaatttgta ttgaaaaaaa aatagtgaca aaataaagtg cccacttcct tcttggcccc       240
     agaaaagatg atttaagaaa aataaaaagc aatttaatag ttaatgtgtc ctcctttggc       300
     cttaaggact tgctggaggc gcttcggcat gcttttcacc aggttttgta ggtgttgtgg       360
     ttctagttct tcccaggcgc gctccaaggc ttcaaaataa ttatttttgt tggtaacacc       420
     agttttgtca accctggcat cgagaatcgc ccacaaattc tcgatggggt tgaggtctgg       480
     gctttgtgga ggccattcca gcggtttaat ccgacaagac cggaagaaag acttggtctt       540
     cttggcagta tgcttcgggt cgttgttcta gagaaatatg aatttctctt caaggcccgt       600
     ctggatcagc gaaacctcca gattttcccg caagatgttg atgtaggaat ctgccgtcat       660
     tattccgtcg attttcacga ggcttcctac tccactccat gaaaaacacc cccagaccat       720
     cacatttcct cctccatgct tcaccgttcc ttgaataatt attttgaagc cttggagcgc       780
     gcctgggaag aactagaacc acaacaccta caaaacctgg tgaaaagcat gccgaagcgc       840
     ctccagcaag tccttaaggc caaaggagga cacattaact attaaattgc tttttatttt       900
     tcttaaatca tcttttctgg ggccaagaag gaagtgggca ctttattttg tcactatttt       960
     tttttcaata caaattgatt ttctttttct ttgagtaaaa ttcttttttt tatcaaaatt      1020
     tcgtaagtgc aactttaaaa gaatatcaaa aataaaatat caaaaaagat ttaagtgtgt      1080
     taactttaat ttgaaccaaa tcaatgagag aaattcgaaa actggtaagg tgggcacttt      1140
     attttgccta tcagtgta                                                    1158
//
ID   Mariner-N1_ACe repbase;    DNA;    INV; 902 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-902
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 525-525 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 98% identical to the consensus. It is an internally
CC   deleted derivative of Mariner-18_AEc.
XX
SQ   Sequence 902 BP; 266 A; 185 C; 209 G; 242 T; 0 other;
     ttaggtgtac aactttgctt ccgccgtttt cctatagatg gctttagcgg taagtggtgg        60
     tcgaaataaa tagatcatag acgtcataca ataaacttgg gcatctgtca acataacccc       120
     atagaaacat tagtcgattt gtgtctgcat cataaagtta ttctcgattg aaaatgtcag       180
     tttacgagcc aaattctcgt catttgcggg aggttttaat tttttgcttc aatatgaaga       240
     aatctgcggc tgaggctcat cgaatgctct caaatactta tggtgaggcc gctattagtg       300
     aaagaacgtg tcgtgagtgg tttcaacgct tcaagaacgg tgattttgac gtccaaggtc       360
     atgctctgta tttggtggga ccagctcggc gtagtgtatt atgaactgtt aaaaccgact       420
     gaaacaatca caggcgatcg gtatcgaacg caattgatgc gtttgagccg agcattgaaa       480
     gacaaacggc cgcaatacaa cgagagacac gataaagtga ttttgcagca tgacaatgct       540
     cgaccccatg ttgcgaaagt ggtcaagaca tacttggaaa cgttgaaatg ggaagtccta       600
     ccccacccgc cgtattctcc agacgttgct ccctctgact atcacttgtt tcgatcaatg       660
     gcacacggcc tggctgacca gcacttccgg tcttatgaag aagtaaaaaa ttggatcgat       720
     tcgtggatag cctcaaaaga tgaccagttt tttcgacgcg ggattcgtac gctacccgaa       780
     agatgggaga aagtagtggc cagcgatgga caatactttg aatcataaat gtataaccag       840
     ttttttacaa taaagcctcg aatttcggaa aaaaaacggc ggaagcaaag ttgtacacct       900
     aa                                                                      902
//
ID   Mariner-N1_BTa repbase;    DNA;    INV; 998 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-998
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 646-646 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 998 BP; 294 A; 213 C; 205 G; 286 T; 0 other;
     cagggtgatc caaaagtccc ttccaccccc tctaactttt tacctaattg aggtaaagat        60
     ttgaaacttg ggggatattc ctaggtcaaa gggagctact ttttggcccc cctaaaattt       120
     tcaggggggc cccccttggg ggggcaacgg cccccaactt ttaattttca aatgggaaga       180
     ccccctttgt gatagctcgt tcgaaagagc ataaaaaaag aaaacttttc gcgcaaaccc       240
     gaagtcaata tctcaaaccg tttcaaaatg gcggccggtt aaagttcaaa atggccgaaa       300
     attcacaccg gttatttgtc gatggatttg cgcgaaaatc ggtatgtagg ggtattttga       360
     cacgagaaaa acgaatttga cgttagattt tcaaaaaaac cgaaatttcc aaaatggccg       420
     ccggttaaag ttcaaaatga ccaaaaattg atttttttag aaatctaagt tcaaatttgt       480
     ttatcttatg ccaaaatact ctcaaattcc aagtttaagg caaatccatc agcaaaaaac       540
     cgaggtgaca attttcggcc attttaaact ttaaccggcg gccattttgg aaatttcggt       600
     ttttttgaaa atctaacgtc aaattcgttt ttctcgtgtc aaaatacccc tacataccga       660
     ttttcgcgca aatccatcga caaataaccg gtgtgaattt tcggccattt tgaactttaa       720
     ccggccgcca ttttgaaacg gtttgagata ttgacttcgg gtttgcgcga aaagttttct       780
     ttttttatgc tctttcgaac gagctatcac aaagggggtc ttcccatttg aaaattaaaa       840
     gttgggggcc gttgcccccc caaggggggc ccccctgaaa attttagggg ggccaaaaag       900
     tagctccctt tgacctagga atatccccca agtttcaaat ctttacctca attaggtaaa       960
     aagttagagg gggtggaagg gacttttgga tcaccctg                               998
//
ID   Mariner-N1_CFl repbase;    DNA;    INV; 738 BP.
XX
AC   .
XX
DT   08-JUN-2012 (Rel. 19.04, Created)
DT   08-JUN-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-738
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 820-820 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 738 BP; 273 A; 95 C; 88 G; 282 T; 0 other;
     ctctctaaaa gtgaatcagt gtattatcac tgaaaaacag taaatagtca ctgattacag        60
     cagttataag tacagcactg taaatcagtg atattttatt gaaagaatca gttaataatt       120
     ttgactgttt caatcagtaa tatttctcaa tatcagtaat atttctttcg ttattgtcag       180
     taatattaaa ctataattca tctctctatc tatttcatat aaaattaaaa attttattta       240
     tatttactaa atatttatta tattaaaaat tttattttat ttatattaca tgcatattga       300
     acttgttatt ttaaatagat aacgaacaaa taattttcat taagtcgcca gacatttatt       360
     tgtccgactt ataaagatcg atttaatatc tgaagcctct ctattgagct tgtatcagaa       420
     attaaatcga agtaatactt ctaattttaa atgtcgctct ttgcaaactt tatataattc       480
     ttataactaa aattaaatac gagagagata gcgattgtag cggtaaatga acgaactagc       540
     gattactggt tttacagtaa aatttactga ttttacagtg aattttattt taactgacca       600
     taatcagtga gatataagat aaaataacaa aaaaataagc gtttccactg aagatcagta       660
     aaatactcac tgattctcag tgaaatctta ttttactgtt taaattagtg atattttcac       720
     tgattcactt ttagagag                                                     738
//
ID   Mariner-N1_CoFl repbase;    DNA;    INV; 1051 BP.
XX
AC   .
XX
DT   03-OCT-2019 (Rel. 24.11, Created)
DT   03-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-1051
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2105-2105 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. TA TSDs. ~150-bp TIRs.  It includes
CC   a tRNA-like sequence.
XX
SQ   Sequence 1051 BP; 371 A; 151 C; 140 G; 389 T; 0 other;
     cactgagaaa agtagtgtta aaaaaattat tataactgta ctaaaaatta ctatattttt        60
     aggaaagctg agctatactc acctgatgac gcaaaattat tacgtttaaa ataattttta       120
     ttatatttta agtaattttt attatgcagt agccctacaa aaattatttc acggcataat       180
     aaaaattact atgtctaaca tagtaaaaat tgtgatagta caatttttgc tacacaacat       240
     agtaaatttt attgtaatcg ttttaaaacg taccacattc taaagtagaa tttgctatgt       300
     gacatagtaa aatttctcat tccactgcat tgctattcag tatagtaaaa attactatgt       360
     tcgaaagtaa tttcgtacga tgtctatagg tatatacgcc tattgagttt caaatttgag       420
     gttatacgaa tgtaaatatt aagagaaaca tattatttga tttatcaggg ttaaaaattg       480
     atacgtgccg acaattaatt ttgaatcgac taattatccg ttgttaacac cttggtctac       540
     agaaaaccct ttgatttttt aactttattg tgtgtatgat aaacagtaca cgttcccaca       600
     tgtactttat tcacactcgc gcggacatca tgtcccgtgg tctagtggtt gcggagcctg       660
     actcggaagc tcaaggatga aggttcaaat cccagtcgct gcagatcttt tttaaaataa       720
     aaatattttt aaaatacatc aatatctatg tacaataaga aaaacatatc tatatacatt       780
     taaatctata tatattaatc ttctgataaa catatatatt cactgggcaa tatatatgta       840
     atatatattt ttcttctctt acttgaatat aaaaattctt tctgagtaaa gtaaaaatta       900
     ctatgtcgaa atagcaaatt ttaatataat ctggttttac tatgtagcat agtaattttt       960
     ataatatggc gagtatgtct cagctttcct ataaaatata gtaattttta ttatagttgt      1020
     aacacttttt ctaacaccac ttttctcagt g                                     1051
//
ID   Mariner-N1_DEl repbase;    DNA;    INV; 514 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-514
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4036-4036 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to consensus.
XX
SQ   Sequence 514 BP; 190 A; 65 C; 83 G; 173 T; 3 other;
     cagtagcggg caaagaaatc cggamaccta gggtatggcc tctatatgca aactttgaac        60
     gggcgtaaaa tatgtaaaaa agatttcggg ttctattaag tatttagtat taaattaccg       120
     tctagtttgg taaatcgtaa gcttttggtg caaaaaaaaa agtgaaacat atcgaaaatg       180
     actgaagctg ataaaggtgc catattggct ttgcgatcgg aaaatttaag cctccgcgat       240
     attagcgcta aagttggctt tttaaatawt ttgaaactta ctttaaaaat aaaaaaaatt       300
     aatttttttc gagtttctca gttttttaaa aagtatcaat aattttaatt taagattttt       360
     tctaaaaaaa aaaatagaat cgaaaaaaga gttgttttgg ctagcaaata cattcattta       420
     atttgttata aaaatgttct tgaaacaata aacacaattt aaaaaattwa caaactaaca       480
     ttttttgtct gtccggattt tttgtccgct actg                                   514
//
ID   Mariner-N1_DSuz repbase;    DNA;    INV; 667 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-667
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 141-141 (2022).
XX
DR   [1] (Consensus)
XX
CC   95% identical to consensus.
XX
SQ   Sequence 667 BP; 243 A; 91 C; 81 G; 252 T; 0 other;
     caagggtggt caaaagtatt ttcacaaaaa aaaagttaaa tatactcata atttgaactt        60
     acttcttgtt aactttggca tcaatggaaa ggtaatttaa atgccgtttg aatgatacaa       120
     tacatttctt aacccattca ttcacattta aactttttaa acttttttcc tcgacttgaa       180
     aacttaaatt ttttgatgca aaaagtttct tcaaacaaaa ataatagtaa ctgcaaaaag       240
     aatttttcaa aaatcatttt gcttatattt tttatgattt tttgaaaatg cttagaaaca       300
     tgcatttgag ccatattttt ctctttttca tacaaatttt ttccgacatt gtcaccttca       360
     aaaaatcata aaaaatataa gcaaaatgat ttttgaaaaa ttctttttgc agttactatt       420
     atttttgttt gaagaaactt tttgcatcaa aaaatttaag ttttcaagtc gaggaaaaaa       480
     gtttaaaaag gagatgttta cacaaattcg tccttttcaa taagtactga atgggttaag       540
     aaatgtattg tatcattcaa acggcattta aattaccttt ccattgatgc caaagtttac       600
     aagaagtaag ttcaaattat gagtatattt aacttttgtt ttgtcaaaat acttatgccg       660
     accagtg                                                                 667
//
ID   Mariner-N1_DTa repbase;    DNA;    INV; 1647 BP.
XX
AC   .
XX
DT   22-JUL-2021 (Rel. 26.11, Created)
DT   22-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1647
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (22-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1647 BP; 570 A; 254 C; 243 G; 580 T; 0 other;
     cagtggctca cagcttattt caaccagtct acaccaaaaa ctttaacagc ccataaaaac        60
     taaacaaaac atgttatcaa aataatttaa acgcagaata catctatgag gatacacatt       120
     agtgtataat aattttatga ttttttaaat attttacaaa tattttttat gaattaatta       180
     caaaaaaagc ccaaaaaaaa ggccacagct tatttcaacc agttaacaaa aaaatcgaat       240
     aaattaacat agtggccaaa acctattttt ttttttaatt tggcatgact acccttttgt       300
     ttaacaacaa tttaaagtta actttatatg gaaacaatgc cttttgttgt tgttgccaag       360
     taaaaactac tcccgaccct tgggaaggac ttttggcata gtttcgtcta aaaatattgt       420
     gttttctaac attttttcgt taagtggact tccaatattg ttttgtggta atgttaagac       480
     acatttaatt cataatcatt agctttcgac agctctggat gagctgaatc tgcgaaaaaa       540
     tatgcacttc ccatgggtaa tttctttagt taaatcaaaa attaatttat atttcaaaat       600
     cctttcagtt tttaattcat ttatcctttt gaatgtgaag atgaactcaa atcttaatcg       660
     cggagtaaaa aaaaaaatta tggaaggacc tgtttgacac ttataggccc aaaacaatta       720
     gcgttcgccg ttagacttta aaatagcaat ttgacttccc aatttaggct cgtcattggg       780
     attttctccg cttagatata tttttccgac tcaaatgtat caaaattcaa gtatttcttt       840
     caaatacatt ttttcaaaca tactaaggac actaataagt gagtttctcg tgtgtatcca       900
     aatgagccct aagcctagcg gcgaacgcta attgttttgg gcctataagt gtcaaacagg       960
     tccttccata attttttttt tttactccgc gattaagatt tgagttcatc ttcacattca      1020
     aaaggataaa tgaattaaaa actgaaagga ttttgaaata taaattaatt tttgatttaa      1080
     ctaaagaaat tacccatggg aagtgcatat tttttcgcag attcagctca tccagagctg      1140
     tcgaaagcta atgattatga attaaatgtg tcttaacatt accacaaaac aatattggaa      1200
     gtccacttaa cgaaaaaatg ttagaaaaca caatattttt agacgaaact atgccaaaag      1260
     tccttcccaa gggtcgggag tagtttttac ttggcaacaa caacaaaagg cattgtttcc      1320
     atataaagtt aactttaaat tgttgttaaa caaaagggta gtcatgccaa attaaaaaaa      1380
     aaataggttt tggccactat gttaatttat tcgatttttt tgttaactgg ttgaaataag      1440
     ctgtggcctt tttttgggct ttttttgtaa ttaattcata aaaaatattt gtaaaatatt      1500
     taaaaaatca taaaattatt atacactaat gtgtatcctc atagatgtat tctgcgttca      1560
     aattattttg ataacatgtt ttgtttagtt tttatgggct gttaaagttt ttggtgtaga      1620
     ctggttgaaa taagctgtga gccactg                                          1647
//
ID   Mariner-N1_HSal repbase;    DNA;    INV; 828 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-828
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 954-954 (2014).
XX
DR   [2] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 828 BP; 278 A; 140 C; 131 G; 279 T; 0 other;
     cagggtgtcc caaaagtaac ggaccaccca aataactctt caatactgac gtttcaagaa        60
     aaatgtttcg gacaaaagtt gtagggattt aagtgagcta ccttatgatg actttgactt       120
     tgaccttgac ctctactttc aaggtcattc ctgaagatca acttgcgttt cttaaatgga       180
     aacccctatt ttttattaca ccgtcttttt ctaccagtta atttgaacaa cttttgtctg       240
     aaacattttt ttatttgcct aatatttttt gagatatttg aggaaaactt gataactttt       300
     tcaatattta acttacgata tctcgctaac tatttgtcgg aagaaaaagt ggtactagac       360
     tttcttgctt tatttagtct caagaatata ttgttacaat aacgccctga cttttgttaa       420
     cttgctgata tttggaaatt tcaaaatcat caaattaaca aaagtcaggc gctattgtaa       480
     caatatattt ccgacaaata attagcgaga tatcgtaagt taaatattga aaaagttatc       540
     aagttttcct caaatatctc aaaaaatatt aggcaaataa aaaaatgttt cagacaaaag       600
     ttgttcaaat taactggtag aaaaagacag tgtaataaaa aattagggtt tccatttaag       660
     aaacgcaagt tgaccttcaa atgaccttga aaatagaggt caaggtcaaa gtcaaagtcg       720
     ttataaggta gcccccttga agccctacaa cttttgtccg aatcattttt ctttaaaatt       780
     caatgctgac gagatatttg ggtggtccgt tacttttggg acaccctg                    828
//
ID   Mariner-N1_LHu repbase;    DNA;    INV; 877 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.02, Created)
DT   17-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-877
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 375-375 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 90% identical to the consensus.
XX
SQ   Sequence 877 BP; 296 A; 136 C; 144 G; 301 T; 0 other;
     cagggtgtcc cattttaaaa accccacgtg aataactttt cagagagaca ttttcaagaa        60
     aaatgattta gaccaaagtt gttgggtttg gagggggaca tccgatgatg acattggttt       120
     aacctagggt gtacatgcca aggtcatatg gaggtcaact ttgttttttt aaatagaaca       180
     ccctattttt gattccaaaa tctaatagct ggtgtcaaga gcttttcaaa acactataat       240
     gaagttattt ttcattaagt acttttcgag ttatgaggct tgtaaattac agtattttga       300
     cataaaatat aaaatatctt gtaaaacatt cagtttttga gaatgttacc ttaatacttt       360
     tatgcacaaa ataatgagac aaatgaattg gtataaagaa aacacattgg ttttaaaaaa       420
     aagtatgcag ttgcatgttg caaattacat attttttctt gaaagcaact atgtgttttc       480
     tttataccaa ttgattcgtc tcattatttt gtgcataaaa gtattaaggt aagattcccg       540
     aaaattgaat gttttacaag atattttgta ttttatgtca aaatgctgta actttcaagc       600
     ctcataactc gaaaagtact taatgaaaaa taacttcatt atagtgtttt gaaaagctct       660
     tgacaccagc tattagattt tggaatcaaa aatagggtgt tctatttaaa aaaacaaagt       720
     tgacctccat atgaccttgg catgtacacc ctaggttaaa ccaatgtcat catcggatgt       780
     ccccctccaa acccaacaac tttggtctaa atcatttttc ttgaaaatgt ctctctgaaa       840
     agttattcac gtggggtttt taaaatggga caccctg                                877
//
ID   Mariner-N1_LMi repbase;    DNA;    INV; 1579 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 20.01, Created)
DT   30-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1579
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 77-77 (2015).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 1579 BP; 486 A; 274 C; 287 G; 532 T; 0 other;
     caaggagacc acatgggtat cggattttag aattttttga tatttatggt acgtgaagtt        60
     cagaactaaa ataacaatca gccaaagcca ttcgacgcaa ctctcaaaaa ttctcgagaa       120
     aatcaagttt tgcaagtacc tgtaagtacc aataattaaa aactgtgcat catctgtctc       180
     aggtggtagc gttctggtct tacaaccata gggtcggtgg ttcgagtctc gctgtgacat       240
     tttttttttt ttattttttt tttgttcgaa tagttacaca attttaatat ctaatggtaa       300
     tttttacgaa aaatgcacgt atttttgttt attcgtaatt ttctgtattt tataaaaggt       360
     tgttaataat gatggtttca ttaaaaaaca taacaagtta cattttttgc agtattggct       420
     tcactattat ttgacgacgg ttgtctttga ttgttcagtt tgtgaagagc tacgatgctg       480
     tttttggaaa gtcatcttca tagctactaa tggcttttca agcagctaac acaattgtca       540
     ttgtcacatc atcgaaatct ggcaagttga cttcaaagct atataaaggc tttttaatca       600
     atgttgtaaa gccatacgtt agaaagcaaa aggtttcttt tactgattga ttcttggagt       660
     ggacaaaccg atcccgtgtt gtataatgaa gtttttcgaa acgacaggcg tctgcctacc       720
     tgcaccgtgc aagtaattcc gccaaaatgc accccattgg tgcagccttg tgacgtgtat       780
     ttctaccgtc aagtacaaaa tttcattaag cgcctgcaaa agtatgccta cctgatcgaa       840
     cgaggacgtg aaattagtga tagagcagat tgcatcaaac ttccttcaat tattcatcac       900
     cagctgtcct ctccaatctt cggtgaaatg atcaggtatg cgtggttcgc ttctaaactg       960
     tgcgatacaa gagaaatctt catgaacgta aatgaagttt gctttccagt tgacatatca      1020
     aagaaaaaat tgcgactgta aaaatgcagc atttgtacga tgtgctcgat gccgtgaaaa      1080
     ttattgtttt ccatgttttt acgatgctta tcaccctggc atgtgtgaga ccacatcgaa      1140
     atgaaggatt tctttatttt tcagcattgc cacaaatatg gaatttgcat tttttgtgtt      1200
     ttatttttta atttaaatca tcagtattga caacctttta taaaatatag aaaattacga      1260
     ataaacgaaa atacgtgcat tgttcataaa aattaccatt aggtattaaa atggtgtaag      1320
     tattcgaaaa caagaaaaaa aacaaaaagt aagtcatagc gggattcgaa ccaccgattc      1380
     tatggttggg aggccacacg ctaccacctc tgtttaataa ttggtactta catgtgcttg      1440
     caaaacttca aagtcgattt tctcgagaat ttttgagagt tgcgtcgaat gactttggct      1500
     gattgttatt taagttctga acttcacgta ccataaatat aaaaaaattc taaaatccga      1560
     tacccatgtg gtctccttg                                                   1579
//
ID   Mariner-N1_PBa repbase;    DNA;    INV; 566 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   07-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-566
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 627-627 (2014).
XX
DR   [2] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 566 BP; 181 A; 106 C; 103 G; 176 T; 0 other;
     cagggtgttt caaaagtgga ggtcaatcgc tcgggagatg attgggaatc caaaaacaag        60
     aaaaaaagtt gatatgaaca tagatccgga aatgcattgt tttcgagtta tcgccatttt       120
     tatgttgaaa tttcaaattg ctttgctttc gaattttttt gtcaaaattg aaagaagaga       180
     tggtctttat gagttttata acataattaa agttaaataa aagttgcggg ctgctttagc       240
     actacacagg atgcaccacg tggagataca gcccgcttag catctcttgg cagagatcag       300
     gactccacag ttgtgcatcc tgagtaatgc taaagcagcc cgcaactttt atttgacttt       360
     aattatgtta taaaactcat aaagaccatc tcttctttca attttgacaa aaaaattcga       420
     aagcaaagca atttcaaatt tcaacgtaaa aatggcgata actcgaaaac aacgcatttt       480
     cggacctatg ttcatatcaa ctttctttct tgtttttgga tccccattca tctcccgagt       540
     gattgacctc gacttgaaac accctg                                            566
//
ID   Mariner-N1_PPo repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-182
RA   Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2748-2748 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSD.
XX
SQ   Sequence 182 BP; 63 A; 46 C; 18 G; 55 T; 0 other;
     cagtagaacc tcgataactc aaacctcggt aacttaaaaa cctctataac ttcaaaaaat        60
     aatatgttcc cttcccatca gagcccaaaa cctctacaac atagaccctt gataacttaa       120
     aacctctata acttaaaata ttttgtgttt cccttggact ttaacttatc gaggttctac       180
     tg                                                                      182
//
ID   Mariner-N1_RPr repbase;    DNA;    INV; 901 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-901
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3281-3281 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined.
XX
SQ   Sequence 901 BP; 251 A; 184 C; 194 G; 272 T; 0 other;
     cagggtgcgg cagcataact tccttttttc aaaacttaat aaaacccatt gtatgaatca        60
     gaacattttt atttgttttt ttataatcta ggtgcatgcc taaagttttg ttttacatag       120
     ttttgaagat aaaatcagat aggtgacgtc ccccattctc catagactga gtaaaccgat       180
     ttctggcgtt tgtcatgact cttgccagca tagcaggcgt tatgttggca atttcttcct       240
     ggatgttgaa ttgcatcaaa ggcctttgca ttcacctaaa gtcacagtgt ggtgttgcaa       300
     tttcctcagc tggaattatt ggtccctggt tctttgagga aaatgaagtc gcagtgacag       360
     tgaattcgga ccggtatgta aacatgttac aggaattttt tttcccccca cggctagatg       420
     aggtggactt aggggacatt tggttccaac aagacggtgc aacggcacac acttcaagag       480
     catcgatggc tgttttgagg gaacacttcc cagagcgcct catctcaatt aggggcgatt       540
     tggagtggcc ggcccgctct cccgatttgg ccccttgtga ttttttttct atggggtttt       600
     ttgaaatccc gtgtttatgt gaaccgtcca aggaccctac aagatttaaa gaccaacatc       660
     caggaagaaa ttgccaacat aacgcctgct atgctggcaa gagtcatgac aaacgccaga       720
     aatcggttta ctcagtgtat ggagaatggg ggacgtcacc tatctgattt tatcttcaaa       780
     actacgtaaa acaaaacttt aggcatgcac ctacattata aaaaaacaaa taaaaatgtt       840
     ctgattcata caatgggttt tattaagttt tgaaaaaagg aagttatgct gccgcaccct       900
     g                                                                       901
//
ID   Mariner-N1_SIn repbase;    DNA;    INV; 907 BP.
XX
AC   .
XX
DT   10-APR-2012 (Rel. 19.02, Created)
DT   10-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-907
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 343-343 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 23bp TIR.
XX
SQ   Sequence 907 BP; 271 A; 195 C; 217 G; 224 T; 0 other;
     ttaggtgtag taaaaagaaa tccattatgg aaatcgtcga gtccgaccgt catgtaagca        60
     ctgttttgat tgcccaggag ctaaacattg cacaaaaaac cgtttggaac cacttaaata       120
     aggctggata caaaaagaag ctcgatgtat gggtgccaca cgagttaacg caaaaaaacc       180
     tcatggaccg aatttccatc tgcgaatcgc tgctgaatcg caacaaaatc gacccatttc       240
     tgaagcggat ggttactggt gatgaaaagt gggtcactta cgacaacgtc aagcgaaaac       300
     ggtcgtggtc gaatcgcggt gagccggcgc aaacggtggc caagccagga ttgacggtca       360
     ggaaggtttt gctgtgtgtt tggtgggatt ggcagggaat catctactat gagctgctcc       420
     cctacggcca aactcttaat tcggacctgt actgtcaaca attggaccgt ctgaaggaag       480
     caatcgccca gaagcggcca gctttggcca atagaagagg aattgtgttc catcaggaca       540
     acgccaggcc acacacatcg atagtgactc gccagaagct ccgggagctt ggttgggagg       600
     ttcttatgca ttcaccttat agtccggacc tggcaccaag tgattaccac ctgttcctgt       660
     ctatggcgaa tgattttgct ggtgaaaaat ttgcctcaag agaagcttgt gaaaatcgac       720
     tgtcccagtt ttttgccaat agggacgagg gtttctatga gagaggcata atgaaattac       780
     cttcaaaatg gcaacaagtt atcgaacaaa acggtgcata tttgacctaa atcggatcat       840
     tctaactatg ctaaataaag ccttcaattt aatgcaaaaa taatggattt ctttttacta       900
     cacctaa                                                                 907
//
ID   Mariner-N20_AG repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 2)
XX
DE   Nonautonomous Mariner DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N20_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-479
RA   Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 10(9), 1188-1188 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. ~96% identical to consensus.
XX
SQ   Sequence 479 BP; 156 A; 94 C; 81 G; 147 T; 1 other;
     tacagggttt accagcataa taaacaactg tccacttgtt tataacaata gtcgttttga        60
     atagacaccg ctgtctacca cttgctcaca cgtcagatgg tgtaagctac tctgtccatt       120
     tcaataacac aattttcgcc ttcgatagca actgtcagat tcggcacagt ttgttttgtt       180
     ttgacaaatt ttgcaaaaac aaaacatttt caaacacgtt tcttttattc aagmaatatg       240
     cagtataaac catacatttc aataaatcaa aacattaatt ttgttaatta tacaacaacc       300
     acaagaaacc gtgccgaatc cgaccgttgt gcaatcgaag gcgaaaattg tgttattgaa       360
     ttggacagag tagcttacac catctgacgt gtgagcaagt ggtagacagc ggtgtctatt       420
     caaaacgact attgttataa acaagtggac agttgtttat tatgctggta aaccctgta        479
//
ID   Mariner-N20_HSal repbase;    DNA;    INV; 208 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N20_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-208
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 974-974 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to consensus.
XX
SQ   Sequence 208 BP; 74 A; 30 C; 39 G; 65 T; 0 other;
     ttaggtgttt cggttaattt tgagggttga cgatgaatgg attgcttcta aagataagtc        60
     ttttttctac cgtggaatcc acttattgcc agaaagatgg gaaaaggttg tagcaagcgg       120
     tggaaaatat tttgattgaa ataatttaaa taataaataa taaacaatcc attcatcgtc       180
     aaccctcaaa attaaccgaa acacctaa                                          208
//
ID   Mariner-N20_LMi repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   25-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-693
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 16-16 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 693 BP; 196 A; 145 C; 145 G; 207 T; 0 other;
     cagggtgaat cacctaacac ttgcaccgca aatattgcgg aaacggaaag tgcgattgat        60
     gtgcggtttt cacagaatgg attggtagtc aggggctcgt atttttagcc aacaaacaga       120
     ttgtaatatt acttagaaag tgtatttttt atgcaaacat acagtttttt aaatggaaca       180
     atggttgttt ctatcatgca ctggaatttt tgacaccagc tgtgtacaaa gaattttgaa       240
     tgacattttt atcacgttta gtttggcagc tacaaccgtt caaagtttcg ggggcggagg       300
     ctgcgatagc gtagctgact ggccgagtgg ctagcccctg gggcacggcc cactgtctca       360
     tgaccaccag ccagtcagct acgctgtcgt agcctccgcc cccaaaactt tgaatggttg       420
     tagctgccaa actaaacgtg ataaaaatgt cattcaaaat tctttgtaca cagctggtgt       480
     caaaaattcc agtgcatgat agaaacaacc attgttccat ttgaaaaatt gtatgtttgc       540
     attaaaaaat acactttcta ggtattttta caatctgttt attggctaac aatacgagtc       600
     cttgactacc aatccattct gtgaaaaccg cacatcaatc gcactttccg tttccgcaat       660
     atttgcggtg caagtgttag gtgattcacc ctg                                    693
//
ID   Mariner-N20_RPr repbase;    DNA;    INV; 979 BP.
XX
AC   .
XX
DT   25-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N20_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-979
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3302-3302 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 979 BP; 351 A; 150 C; 177 G; 301 T; 0 other;
     cagtggctca cagtcaaaat gatacaccag gttatttgtt agaaattgtt gaataagtag        60
     atcaaaatta tatttaattg aaaaaaaatt atttatttca attaataaac atcctagtaa       120
     tatgttcttt gtgtgaaaac aaataaaaat gaaccaatga tttattaata agaataaaca       180
     cattttttta caattgacta aactcacagt gaaaatgata caccgttctt tgcccctata       240
     tgtgtgtatt tgtttacttt aaattgtttt ctcctctggt ttaattgttt aaattgtttt       300
     ctaaactctt ctggcgaaat catttggttc tcttcagaga caatatctgc cgtttatttg       360
     aacttttcca gtaatgggag tacatacaac tcttaaagaa cgtgaattgg tcattaaaca       420
     ttttaatgat gggaaatcgc tgaacgaaat agccgaaata attaaaaaaa gccgttcaac       480
     tatccagcat atagtggaga ggtacaaaaa ggaaaaccgc attgccagga aaaaaactaa       540
     atctacaaaa aaaaaatatt aaatgatagg gatgagtcgt ggatccttag agaagtgaaa       600
     aaaaatccat tcctgagtgc accaaaaata gccgtagaac tatcaaaacg tttaggtcag       660
     tcagtaagtc cagaaacagt ccgacgtgtg ctaagaagaa acaaatttca tggaagagta       720
     gcgcgaaaga aacctttcag ttagggtata atttgcaaat gaatatttat taaaggaccc       780
     cgagttttgt actactgtaa tatagtaaat ttaatatttt cgggtccgat ggacgttcct       840
     atctgtggag gaaaccagga gaagaacttg ccaaatcaaa atttccgccc aactgtgaaa       900
     catgggggtg gcagtgttat ggtgttttag ggctttttat ttatctactc aagtgtatca       960
     atttcactgg gagccactg                                                    979
//
ID   Mariner-N21_AG repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   04-SEP-2010 (Rel. 15.09, Created)
DT   04-SEP-2010 (Rel. 15.09, Last updated, Version 2)
XX
DE   Nonautonomous Mariner DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N21_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-357
RA   Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 10(9), 1189-1189 (2010).
XX
DR   [1] (Consensus)
XX
CC   TA TSD. >95% identical to consensus.
XX
SQ   Sequence 357 BP; 132 A; 64 C; 53 G; 107 T; 1 other;
     tacagtcttt ccccgagtta cgcgacactc gagttacgcg aattcgagtt acgcgaattt        60
     tttatttttg acagttcaga tgtcaaatca gtacaatttt ctccatcaat tgtcaaatga       120
     aaaataatta gcaatatttc aaaattttaa ttcactaaaa agtcagaaat aactgaattc       180
     tccacaccaa ttgaatcaaa taagtgataa attacataaa tgaactaaat tcaatcaaaa       240
     atcatgataa akaaagtata tttttgctgt aaaacgtgat attcgactta cgcgaaaatc       300
     cgagttacgc gaatgtctcc ggaacgcatt attcgcgtaa ctcggggaaa gactgta          357
//
ID   Mariner-N21_LMi repbase;    DNA;    INV; 1354 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 20.01, Created)
DT   08-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1354
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 17-17 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1354 BP; 393 A; 281 C; 249 G; 431 T; 0 other;
     taccgtatat ttccgcagat aagacgacct tcagataaga cgaggtacaa attttcatca        60
     aaattttata gtttaagcat atatctggcc tataagacga cccccaagtt accgtattta       120
     cccgaatgca tgccgcactt tttttccagt tttcgggatc taaaaatacg cctgcgactt       180
     agattcggag gcaaagcttc aggaagttcc gaaaaatgcc gttagaagcc gccataagta       240
     gttttcgtga ttggtacacc tggatttcac cctttgttgc agtgtttgcg gtctgctttt       300
     gaactttcgt gcgtgtagtg ctacgttgta tccgatcgtg aagaagcatg ttttttttac       360
     accgcgaagt taaaaaaaaa agtaatttct ttcgccgaga cgacatttaa tcgcgccgat       420
     gcacatatta tgcgggtgaa aacacacgaa attgcccgag aacagaagat aaaggatttc       480
     gaaggaagcc gcaattgttg cgtatagctc cgaaatattt taaccctttc actgctccgt       540
     acgtaaatat actctaatcg tttcagtgcg actctggata tattgagaaa ttatttttga       600
     caagcgacat tgtaaaatca agctgcattg taaataatta attctattcc tgctttatgg       660
     catataggtt atcgtatgta cccttgtcca ctcagtaaat taataaagct cgaaaagcga       720
     atattttttt ttaattgcgc aaaactttgt tttcgtaaat ctttcctcca cgatgtaaat       780
     ttcatcaggg taatatcgca gatgtgctgc atagcgcggc tatagcgagg cttcgacctc       840
     caaacgatat atatcgaatc gatacgtttc gaaacgatat gtatggaata agcgaatgtt       900
     tctgaaccgg agattctgct acgcgccctc ataaaaaaaa tcttgtttgt cctataccta       960
     acctaacttt ctaggttcag aaacactaaa tcgatttaca gttgtacgtt cgatatatat      1020
     catttcaggc cgagctactt cgagtgtaag ctttcttgta aattacccag aaagctgtac      1080
     tcttaggttc ctgcctaacc acatccttta aaatcacgac atattcataa aaatcataac      1140
     attcgcctgt tcgatacgta tcgtttcgat acttaaccgc ttcgatatat atcgtttgga      1200
     ggtcgaagcc gcgctatgca gcacatctgc gaaattacca atttcagact aaatttcaat      1260
     ctattttttt ttgtaccgtc gtataagaca acctcggatt ttggggcctt tttttatgat      1320
     tcagccatcg tcttatctgc ggaaatatac ggta                                  1354
//
ID   Mariner-N21_RPr repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N21_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-930
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3303-3303 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 930 BP; 239 A; 237 C; 219 G; 235 T; 0 other;
     cgaggtctgt ctaaaaagta tccgaccttt atttttccct cgcaaaataa agacgatagc        60
     gcggcgccac tgtactcagt aaaggaagac accttcatgc gcatgtgtga attttgtcac       120
     cgccttccag cgcgtcagtc gctgcctgtg ggtcgctgag tgaggtgcta ctcaacgtgt       180
     tcgtcgcatt accgattctc cgacttccgg atccgattct ctcaagatga ctgaacgtgt       240
     tgagcaaagg cactgcatca aattttgtca aaagcttggt gattctcaaa gcgaaacaat       300
     tcgtaagatt cagcaggtgt ttggagacga agcgatgggt gaaacacaaa ttaaggagtg       360
     gttcaaccgc ttcaaaatag ccgcacatca gcggagagtg accaagttgt tgtcgccgga       420
     acaaaaggac ctccgttttg aagttgcact aactccaacc tcttgggcaa tctcccgcac       480
     ggtcaagcga cgatctgcca tcaccaaatt tcgcacagtc tcaacaacgg ctgcactccg       540
     agcagtctgg ggcctgccag aacgctggtc actctccgct gatgtgcggc catttttgaa       600
     acggttgaac cactccttaa tttgtgttac acccatcgct tcgtctccaa acacctgctg       660
     aatcttacga attgtttcgc tttgagaatc accaagcttt tgacaaaatt tgatgtttca       720
     gtcatcttga gagaatcggt aatgcgacga acacgttgtg tagcacctca ctcagcgacc       780
     cacaggcagc gactgacgcg ctggaaggcg gtgacaaaat tcacacatgc gcatgaaggt       840
     gtcttccttt actgagtaca gtggcgccgc gctatcgtct ttattttgcg agggaaaaat       900
     aaaggtcgga tactttttag acagacctcg                                        930
//
ID   Mariner-N22_AG repbase;    DNA;    INV; 1410 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   23-JUL-2016 (Rel. 21.07, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Anopheles
DE   gambilae.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N22_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1410
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 16(7), 1393-1393 (2016).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >99%
CC   identity. TA TSDs. 49-bp imperfect TIRs. It is close to
CC   TSESSEBE
CC   II and the comparison shows that this is an internally deleted
CC   version of autonomous TSESSEBE II-like element.
XX
SQ   Sequence 1410 BP; 398 A; 323 C; 321 G; 368 T; 0 other;
     cagtatcgga cattaagata ggaccctttt ttttcaatgc accgtgcact tgttttgcca        60
     cgttacttgt gtttgtgtgt gtgtatgtgt gtatgtgtgt gtgtatgtgt gtgtgtgtgt       120
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gcgtgtgtgt gtgtgtgcgt gtgtgtgtgt       180
     gtgtagtagt agaaagagag tgtgcttttt aatgtgtatt tgcaagtgcg cgggtttgtg       240
     tctgaaaaac atagcttgcc atgatgtcat attgcgttga aattattctt attatgtgtg       300
     ttatcatgtg aaacattgtg cgtttacact tggataaaaa ctaaagtttg catcgacagc       360
     agcgcttgtt cctcggacga aaacgcaggt gtgctgtttc atgaatgtga atgcgacacc       420
     ggtgcgaaat ggacacgcgc acaatagcaa tgaactcggc attccctcac aggtgtttct       480
     ccagtgcacg ccattgaaag gccttcgtgc atctctgcgt tgcacgttgt gtgcgaatgg       540
     taaactttgt gcgtgcattg agctggcgcg cagttattct tttcaatggg cgttttgttt       600
     catgagcgcg gcagtattct tttctcgatt ttgaagggaa gacgcttact cgcgtactcg       660
     ttgatagttt ttatccatgc gatgttttcg ctgctccaaa acgatgtaat tcatcgcgta       720
     tagaagtaga acgcaggcag agcacgggat cagccgtgtc caagttttta accagcgcgt       780
     tcttgacggt ccaagcaagc aatgttagta acaatgggtc gaggtaaacg ttgtaccgat       840
     catcagcgcc atatgtaaaa gcgaatggct gctgctggca ttaagcgcaa aaggatcgag       900
     ttcgtaatgg aacgatcgcg cacttttgtg gcaaacgcgc ttcggacaac cgaaacgtgc       960
     ttagacaact gaaacgcgct tggacaaccg aaacgcgcaa gtcaaccgga cgtcctcaga      1020
     agaccacggc gaaagaagac cgtaacattg ttaatatatc gaaaacacac tgatcgcgag      1080
     ggcggtggtc ctgcttatca caccaaaaac ctaacccaaa acacaaaaaa actacttaca      1140
     aatctatccg aaacgaccta cttgtgaaac aaacacacac atcaatacac attcaaacat      1200
     acatccacac acacacacac acacatgcac acacacacgc acacacacac acacacacac      1260
     acacacacac acacacaaac acacatacac acacatacac acacatacac acacacacaa      1320
     acacaaacac atacaaacca cacataaact tggcccaacg ggtgcacggt gcgttaaaaa      1380
     accaatgccc tatctttctg tccgatactg                                       1410
//
ID   Mariner-N22_HSal repbase;    DNA;    INV; 2086 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N22_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2086
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 975-975 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 2086 BP; 683 A; 414 C; 404 G; 585 T; 0 other;
     cagggtttgt caaaagtgtg gaaaccctta aataattttt gtaaaaatga aaatatcaaa        60
     aaacggtaaa acacgtattt tgatttttca aaaaagctac cctatgacat ggataccgat       120
     cattccccac cccctggtac gcgggggtaa aaggggggtt gaaaatttta aattggacta       180
     agggtcgagt gggggctcat ttgaaaggtc ttttcataac aaacacaccc ttaaaatttt       240
     aagtcgctac gaccccccca ttaaaaatgg cggccgttca aatttcgaaa tttcatgcac       300
     ttagtgttat ccaggatcaa ccggctactt aaaatcagtt gttctcactg ctacttaaaa       360
     tcagttgttc tcacggctac ttaaaatcag ttgttctcac ggctacttaa aatcagttct       420
     cacagatctt aggcagatta aaaattaaac gttttaaaaa tggctggcga attgtcggaa       480
     cgtgaaagaa tcactatcct catgatgcgt ggatggggtg ataacgagcg gtcgtacgct       540
     gctgtcgctc aattatttaa tgagacgtat ccgaatcgtc gaattaataa gtccactgtc       600
     ttaaaaacaa tggaacgttt cagagaaact ggtagcgtaa acaatcgccc taaatcaggg       660
     agacctgcca ttaacgaaga aaaacaactt gatgttctgc agacatttat tgaaggtccc       720
     aattctacta ttaacagagc cgctcaaact cacgatattg ctcccaagtc cgtttggaga       780
     attttaaaga aaaacaagtt ccatccatac aaattacaat atgttcaaga attgcaagac       840
     ggagatgtgg agcgtcgtat aggtttctgt gaaagaatga tggcactaat agatgtccgg       900
     cccatgttcc cttatcaaat tgtttttaca gacgaggcaa ctttcacgtt aacgggagaa       960
     gttaataatc aaaattttcg tttctggtca gatgagaatc cgaattgggt gcgggaaact      1020
     cacacacaat acccacaaaa aataaatgta tggtgtggaa taatagatgg ctacttaata      1080
     ggaccgtttt ttttttaaga aaatctgaac gctcaaaggt atgacagatt acttgtagat      1140
     caaataattc cagccatacg aaatattttt ccaaataatt tcgaagaaat atggtttcag      1200
     catgatggag ctcctgctca ttttggttta gggccacgtc aaattttaaa tgagactttt      1260
     ccattacgat ggataggaag aaggaacaga aatgagggag gagaggattg gccacctcgg      1320
     tcaccagatc taactcctct tgattattat ctatggggac acctgaagag taaggtttac      1380
     aaaacaaaac ctgaaagcat ccaagaattg atacagcgaa taagggatga aatagatttg      1440
     ataccttttg agacgaatcg tagagccatt tctgcattct atcaaagatt ggcatattgt      1500
     caggaagtaa atggcagcca ctttcagcat ttactttaac acactgagta aaatttattt      1560
     taaaacacgg agtaaaaggt tttgaatcat taaagagaga tgacagtttt caatcgtctg      1620
     ttttgcaacc tatcacgact atacatacaa cacattcaca cttgtttagc cacacgcacg      1680
     cacacacata cgcacgcacg cacgcacaca cacacacaca cacacacaca cacacaaggg      1740
     atcagattca tgccacttcc acgcagttga tcctggataa cactaagtgc atgaaatttc      1800
     gaaatttgaa cggccgccat ttttaatggg gaggtcgtag cgacttaaaa ttttaagggt      1860
     gtgtttgtta tgaaaagacc tttcaaatga gcccccactc gacccttagt ccaatttaaa      1920
     attttcaacc ccccttttac ccccgcgtac cagggggtgg ggaatgatcg gtatccatgt      1980
     catagggtag cttttttgaa aaatcaaaat acgtgtttta ccgttttttg atattttcat      2040
     ttttacaaaa attatttaag ggtttccaca cttttgacaa accctg                     2086
//
ID   Mariner-N22_LMi repbase;    DNA;    INV; 2204 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 20.01, Created)
DT   09-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2204
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 18-18 (2015).
XX
DR   [1] (Consensus)
XX
CC   >84% identical to consensus.
XX
SQ   Sequence 2204 BP; 567 A; 522 C; 511 G; 604 T; 0 other;
     cagggtgttc attttaactg aagacattca aatatcacgg aaactacacg tcggatcaaa        60
     aaaaagtaca atactaattt gtttgtatcg gaggggacat ccaatgatac tacactcgcc       120
     cccccaccca accccgtgcg tgggtggcgg ggggcaactt tgaaatcttc aatgggaacc       180
     ccggttttta tcgcagatta cgattgtacg gcaaaaacta catacgtttc gtcttaaaca       240
     tttttccgtt tcgccacaga tggcgctgta atcagcggaa tcgaaatgag tccacaactg       300
     taatttacaa catgcagctc aatgtccatt taatattcaa tggcacgggg gaccccacct       360
     ccatgcttcg acggtaggac aggccagtac ttcatggctt tcaattgtac actccactca       420
     caacgttgta tacctccgac atatcgatca ggggactacc tgatgcgcct ctgtgtccgg       480
     ggctcgaagc gaacgttccc ctgcttttcc aattaaagta aatgttcaaa tgtagcacct       540
     tcaactgcag tacacgcagt gacccgttct gcaaatgatt gtacacagga tataagcata       600
     tctgtggaaa tgtcagcaca agcgttacgt atgcggtcga tcatgtcttc acggcctgtt       660
     ggcatttgct ggtacacctt accttttaaa tatccccaca gaaagaaatc tagtggcgtc       720
     aaatcgggtg acctagcagg ccagttaata gggccacctc tgccgatcca ccgaccagtg       780
     taaacatggt ctaatacttc gcgtgcttta cttgcgtaat gcgctgggca cccgtcgtgc       840
     tgaaaccaca tacgttgccg aacgtccagg gcaacatcgt ggagtagtat cggtagttcc       900
     tgttccaaaa acgttccata tttgcgtcca tccaacgtgc catcaataaa atatgggcca       960
     atgagtttgt tccccatgat gccacaccat acgttaaccg accaagggcg ttgacggtcg      1020
     acttgccgta accagtgggg attgtctaca ctccagtaat gcatgttatg ccggttaacg      1080
     ctaccatgat ttgtgaaggt agactcatcg gaaaacagta cctcggcaaa gaacgtgggg      1140
     gtcgttcgca tttgttgaag tgcccattca caaaacacta tccggttatg gaaatcgtct      1200
     ccatgcagtt cttgatgcag tgacacgtgg tatggatggt acctatgacg atgcaatatg      1260
     ttgcaaatac taccgatgga cataccagaa tcgcggtgta attgccgaac acttatctgt      1320
     ggattgtggt gtactgctgc tagtactgct gtttcattag cttcccctgt aactggtttg      1380
     cttcgtttcc gcttggcagt ctgtacactg ccaccagaca taaaggcgtt cacaaccttg      1440
     taatagaacg aacgagagcg aacattctct ggaaaacgct cggcatacat ggcaacagca      1500
     gcgtcaacat ttctcttaca ttcgccgtaa atcaggatca tttcagtttt ttttctgtgg      1560
     ttgcagcgtg catcgtctat tcgcacgtct tgtctacgaa tgataggtag gtgtgcagga      1620
     agtaaacact gtacacgtaa tgcttagagt tgctttctgt tctacgtctg ctagatacat      1680
     gagctccggt cacagtgtac tgcgtgttat gatacgtcgt agttcgctac acggccacag      1740
     tggcgcatcg aatagtccca tgttcgatat gtcagaggga tacaacgttg cggatggggt      1800
     ttccaagtaa acgttatgaa ttactggcgt gtcctactct cgcagtatga atgtggggtc      1860
     ccccgtgcca ttgaatatta aatggacatt gagctgcatg ttgtaaatta cagttgtgga      1920
     ctcatttcga ttccgctgat tactgtggcg aaacggaaaa atgtttaaga cgaaacgtat      1980
     gtagtttttg ccgtacaatc gtaatctgcg ataaaaaccg ggggttccca ttgaagattt      2040
     caaagttgcc ccccgccacc cacgcacggg gttgggtggg ggggggcgag tgtagtatca      2100
     ttggatgtcc ccctccgata caaacaaatt agtattgtac cttttttgat ccgacgtgta      2160
     gtttccgtga tatttgaatg tcttcagtta aaatgaacac cctg                       2204
//
ID   Mariner-N22_RPr repbase;    DNA;    INV; 921 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N22_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-921
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3304-3304 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 921 BP; 272 A; 185 C; 193 G; 271 T; 0 other;
     atgggttggc aactaagttc ccgccgtttt ttttaaattt taacattccg catgtcatta        60
     aatgtttttg gcataatgtt ttaaatcatt cgaaaaggga tgttttgttc taccagaatc       120
     tatttttttt tttttttgtt cgagttaatt tatgttaatt ttcagatcat taaaatggaa       180
     tgtcaagttg agaaaaatga gcattttcga cacctccttc tttttgcttg ctcgtcaccg       240
     ctcaactcat ggacgcaagc aacgatttct ttaccgaatc gttactggcg acgaagaatg       300
     gtgcctgtac ttaatatgaa gcagcgcaag gaatggctta gccccggtaa acaagcgaca       360
     ccgcgcgtga aacaagatct tcatccgcgt aaaacgatgt tgtgcgtatg gtgggactgg       420
     gaagggatta tccattacga attgcttgaa cggaaccaaa cggtcaacgc ggaactctat       480
     gttcaacaga tggaacgact caacacggct attcaagaga aaagacctaa tcggcagcat       540
     ggagttcttt tgctgcacga caacgcccgc cctcatatcg ccaatatgac caaggaagcc       600
     attcaaacgc atggctggga agtgctgcca cacccgccgt actctcccga tttggcacca       660
     acggatttcc acctctttca aatgctatgc gcggagtttc gttcaatact gatgcagaat       720
     tgagagcttg gttggatgaa tttttcgagt cgaaaccggc tgatttctac caacgaggta       780
     ttgaaaatct tgttgaacgt taagaagaag ttgtaaacaa caagggagaa tacattattg       840
     attaattagt tgttaatttt tattgaaaaa taaactttta aaaaatttaa aaaaacggcg       900
     ggaacttagt tgccaaccca t                                                 921
//
ID   Mariner-N23_HSal repbase;    DNA;    INV; 970 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N23_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-970
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 976-976 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. The 3'-terminus is not determined.
XX
SQ   Sequence 970 BP; 272 A; 200 C; 214 G; 284 T; 0 other;
     cagggtgggc cattttaatc cgtccacggg aatatctcct caggtagggg cgatagcgaa        60
     aaatgcctca gacaaaagtt ataggataag cagggggaca cctagcggtg accttgactt       120
     tgaccttgag gtgaaaggtc aaggtcattt tgaggccaaa ctgatttttt taaatagaaa       180
     ctcctatttc agactacgga aatggaaagt acggaaaatt tcacgtccaa ataggtaact       240
     catgactgtg gtcaaaatga cctttagggg ttgtttcaag gacaaacgcg taatattaat       300
     caattcactc aagtaactgg taagctaagc gagatagtga aaaatgtttc agacaaatgt       360
     agtatttgga agtggacgtc aggtcatgac cttgaactta actttgaggt aatttcaagg       420
     tcaaactgaa tttttaattg aaattagtta acaagattat caatgacttg actcctactt       480
     ttagcgttac ccaggaacaa cgacgtggac gtagtagggg gtatgttccc tttggggtgc       540
     ttgattcgcg tgagtcccct tgcctctcac ggttcggggt gcttgattca cgtgagtccc       600
     cttgcctctc acggttcggg gtgcttgatt cacgtgagtc cccttgcctc tcacttttca       660
     cggaacattt tagagcagat tctcaaaaac gttcccgttt tgctgaatac ataattcgat       720
     cctcctttaa aaattttcaa tagtacttaa aagtacatca cgcacaacat tttggcaagc       780
     acctctgatt ctctccatca tgttatccct agtggttggt tctttagtaa aaacaatgtc       840
     ttttaaataa ccccataaat aaaagtctgg aggtgtcaag tctggggatc ttgcaggcca       900
     tgctacaggt ccacgtggtc caatccatct ttcacggtaa cgctcattca aatgtgcgcg       960
     aactggattg                                                              970
//
ID   Mariner-N23_LMi repbase;    DNA;    INV; 1529 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 20.01, Created)
DT   09-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1529
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 19-19 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1529 BP; 461 A; 282 C; 305 G; 481 T; 0 other;
     cagtagaacc cctatttaac gtttttctag ggaccggaat tttttaacct taaatggggg        60
     tttaccttaa attgaggttt tgatagaaag caaacctttt tcagaactgt ttgcctgtat       120
     tgatgtgaat atagggtgca cctaaacttt cgacactttt tatagtaaaa aaaaatctcg       180
     aatataggcc gcactaatac attttcgtga aagtttaatt atagaatggc ttctattaat       240
     cggcggcgaa taaactgtct gctaaaatcg tagtttgtcg ttctgccgct aggtggcagg       300
     ccgtctacac ttaaacacaa agttaaacac atgtgcgcgg aactaccggg atttgttcag       360
     tgtatcggga gatctggtga tgggagaaaa aatctttatc agcgacaagg agagcatcgc       420
     ggtgcttctg tagcatgctt aggttggcaa catacctact atgtttcatg tagccaaggg       480
     cgtgccactt tgatggggcc aatgagaagc gagaaatgct taaatgtgtt tatagcgcca       540
     gatataaagc tacagtctgg tttgttgtgt tcgtgaggta ttgttgcgag tgattatggc       600
     aggatatgcc attaaataga tgaagttgac tgaatatata ctccaccgtg atgtcattga       660
     atggtgtttg tgcgtgggca tttgttttgt tacgaatgtg tcattacttt ttacagtacc       720
     atgtgatcca tttacgatca ccaatccacc tactgaacca catgatttaa tttaaagaca       780
     ctaatcattt caaacaatga tgatttgcaa tttttgtaaa gtatgcgtct ttacttttca       840
     caatacaaac tgaaccattt acattcacac atccacctac tgagccccat gatttaattg       900
     gaagagacta atcatttaaa acattgataa tttgcaacgg aaattatagt gtggtagaaa       960
     tttaatgtca taatattttt cgtcggaaca cgggtgtatc acttcacgca cattaacaaa      1020
     caagtgactg ccgacatgca caacgaccac tgccaacata tcacgtaagt acagtacgac      1080
     catgccgctg atctagactt gacacatgct agacacacag catttcagcg attttgtact      1140
     ctgtgtgtta cgtacatcgg ctttttgttt atgagcacac agacccgttt tccacccaca      1200
     ggatacgtgt acggtatatg tcattatgaa atttgcgatt tataatgtga ggaggaaaac      1260
     ctcaattata ggccttaaat cgtccttcac aagcttatga cgtctttttc ataggttttt      1320
     attgtcgcat aaccataaca aatagaaata aatacttgag aatttcaaca tttcctaacg      1380
     ctaaatgcgg gttttgccat aatacgaatt acgttaaatc gaatataaaa ttgcattgca      1440
     cttatggaat aatttttggg acttgaaaat tcttccgtta aatgggggtt tacgctaaat      1500
     cgaggtcacg caaaatcggg gttatactg                                        1529
//
ID   Mariner-N23_RPr repbase;    DNA;    INV; 899 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N23_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-899
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3305-3305 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 899 BP; 305 A; 154 C; 167 G; 273 T; 0 other;
     cactgagagg caaaaaaagt ggccaccctt aaaaaaatgt atttaaccat tcgttattgc        60
     aaaaataaaa tatttttagc atgcattgtt gataaacgta tggtagctta aagaaatgat       120
     aaggaaattc aaaataggga aataaagaaa tatggaaaaa acaaaaaaaa caaacaaatc       180
     actagtacac cgtttgtttt tgtaaacttt gatctctaat ccttaaaatt cacagtgatg       240
     tggtttgggc caggattaat ttgaagctcg gactgaatta atttttatag agtggtcctc       300
     tataacagct gctggctaca tagacgacat tctttcggag gctgttgtcc cattcgtacc       360
     atactttggc gaggaatttt cgtttaagca cgataatgca cggccccata cagcaaagat       420
     tgtttcccgc tacctggaaa acgcttcaat ccgatgttta gagtgggcca gcatgtagtc       480
     cagatctaaa gcctattgaa aatctatggg atgagttgtc aagacgaatt aagagacgtc       540
     caacattagc agattcgctt caggagttaa gggttgcact agcggaagaa tatgaaaata       600
     tccctcagga aattattcaa aatcctatta ggtcaatgcc ccgtcgaatg caagccctaa       660
     taaacgcaag aggcggaaac acaccctatt aattggaaaa ttaacatttt gttaatttca       720
     aattacttaa taatttttct tttttttaaa taccacttgt tattatttac ctttaatatt       780
     cctaagtatg ttacaagtgg cctgttattt attctaaaag tatgtggaga cgttaataag       840
     aaattgattg gaaatcagta cacatactga agggtggcca ctttttttgc ctctcagtg        899
//
ID   Mariner-N24_HSal repbase;    DNA;    INV; 719 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N24_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-719
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 977-977 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. Both termini are almost identical to
CC   those of Mariner-10_PBa.
XX
SQ   Sequence 719 BP; 221 A; 136 C; 138 G; 224 T; 0 other;
     cagggtgttt cattttaagt gatatggtcg attatctcgc gaatcgatga ttttattgaa        60
     aaatttttcg aacgaaagtt gcatggcttg aagggggaca catgatggaa atgtggactt       120
     gaccttgagt gaccttgtca aaatcaggtc aaggtcatta atgttttttt aaatggaaac       180
     ccctattttt tattacatat tcttgtagct tatctcgaga gctttccaaa acactataat       240
     aaagttacgt ttcattgagt actttccgag ttatgaggct tgaaagttaa ggcaagaccg       300
     atcactgatc cggccaacta aggcaagact tatcaacggc taaagacata ttcgaattga       360
     tcttgcctta gttggccgga tcagtgatcg gtcttgcctt agttggccgg atcagtgatc       420
     ggtcttgcct taactttcaa gcctcataac tcggaaagta ctcaatgaaa cgtaacttta       480
     ttatagtgtt ttggaaagct ctcgagataa gctacaagaa tatgtaataa aaaatagggg       540
     tttccattta aaaaaacatt aatgaccttg acctgatttt gacaaggtca ctcaaggtca       600
     agtccacatt tccatcatgt gtcccccttc aagccatgca actttcgttc gaaaaatttt       660
     tcaataaaat catcgattcg cgagataatc gaccatatca cttaaaatga aacaccctg        719
//
ID   Mariner-N24_LMi repbase;    DNA;    INV; 925 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-925
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 20-20 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 925 BP; 279 A; 192 C; 203 G; 251 T; 0 other;
     cgaggtgcga caataaagta atgagactga ttttctttgc aagatgtggc aaccctgcag        60
     gcttgcgtag gcacaatatc tttgaccttg gtctataagc tgcttctagt ccaagcggca       120
     catcgatgca actgctcagt cgtgagttgt gctgtaataa gttaacacgt gtttgtgtct       180
     ctcgtcacgg aaatggaacc gcataatatt gcgcaacggt atgccatttc tttttgcgtt       240
     aaattgggtg aaaacgcgac gacaacttac ggtaagcttc agaaggcttt tggagaggag       300
     gttatgtcaa gagctcaagt ttttcgttgg cataaaatgt ttagtgaagg cagaacgaat       360
     gttgaagatg aagaccgcag tggacgacca tcaacctcac ggtgcacttt gattccaagg       420
     gaattgttca taaagagtgg gtgcctcctg gacaaacagt taaccaatat tactacaaag       480
     aaattttaga aagacttcgt aaaagagttc ttcgtgtccg tgccaacatt gctgataatt       540
     ggattctgca tcacgataat gcgccatccc atactgctct gtcagtacag caatttttaa       600
     cctcaaaaca aatttcagta ctaccacagc caccttattc accagatatc gctccgtgcg       660
     acttttttct atttccaaga gtcaaaacgg cggtcaaggg acaccatttt caaacaacac       720
     aagatgtcca aaaagctgtg acgagggtct tggaggatat tacagaagat gagttccaga       780
     aatgttacca tcaatggcag aagcgctgga aaaagtgtgt gcaatcagaa gggaactact       840
     ttgaaggaga caacactaaa cttgactaaa acggtaagca acattttttt tcacatcagt       900
     ctcattactt tattgtcgca cctcg                                             925
//
ID   Mariner-N24_RPr repbase;    DNA;    INV; 560 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N24_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-560
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3306-3306 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 560 BP; 187 A; 99 C; 122 G; 152 T; 0 other;
     ctgatggaca aaattagcgc accactcagt ttttgtttag ttaaaattaa ataaattatt        60
     ttccgctttt gttttggacg tacatcactt gtctaaagcg atttagggag acaagaggtc       120
     attcaagaag agatgtacag cagagagaga gagacgatag gtacatccgg cacctggctt       180
     tgcgaaacag gagtataacg ggaaatgaga taaaaagtct cataaggcaa gtccgaaatg       240
     tttccatctc cagcaggact gttagaagaa gacttaatga aagtaacctt agagccagac       300
     atcctgctcg tggccctctc cttaccacag ttcacaaaat gaccaggctt cagtttgcac       360
     gtgaacatgt gaattggact taagacaact ggaagagagt tctctttaca gatgaggtga       420
     gaataggcct aaattcttca gatggccgta gttacaaatg gcttattttt tcagccaaca       480
     atattttgaa agtccaaaat ttgcacaaat tggaaataat aaaaaaaata agggtggtgc       540
     gttaattttg tccatcagtg                                                   560
//
ID   Mariner-N25_HSal repbase;    DNA;    INV; 941 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 19.04, Created)
DT   03-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N25_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-941
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 978-978 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 941 BP; 277 A; 197 C; 187 G; 280 T; 0 other;
     cactgctcaa aagaattatg gcatagataa tttattgccg aaaattggcc aactttgact        60
     ggcgattact tcgcgaaaaa ttattgtaga ctaatgattt tttttcaaaa tgaagcttga       120
     agtctctact ttaagaatgt atctccattt tttgcatgcg atgcacccct acccctgtaa       180
     cccctgacat ctgagggcat gtttggtata ctgaaaattg caaagtttga cggaatgcac       240
     ggacgtggac aatttttttt cggggacgcc gtttgcatcg tcataaagtt caaatcttcc       300
     ccttcaattt gaaaaaaaat ggagtcgcta caattttttt tcgcaaagtt acagcccttc       360
     aaaaatatcg ttgtttttga ccttcgggcc aagtaccggc cggcggatta aatgactgga       420
     aatcatagtg gagcaacggc aaaagtgttt gttgacatac gcacgcaagc acgcgcgcat       480
     gtttttcagc tcctggctcg tgttttgacc acagccaaca ttcctagcat cggcaaacaa       540
     actctctccg tattctccac ggctccgtac gatatttctg aagggctgta actttgcgaa       600
     aaaaaattgt agcgactcca tttttttttc aaattgaagg ggaagatttg aactttatga       660
     cgatgcaaac ggcgtccccg aaaaaaaatt gtccacgtcc gtgcattccg tcaaactttg       720
     caattttcag tataccaaac atgccctcag atgtcagggg ttacaggggt aggggtgcat       780
     cgcatgcaaa aaatggagat acattcttaa agtagagact tcaagcttca ttttgaaaaa       840
     aaaatcatta gtctacaata atttttcgcg aagtaatcgc cagtcaaagt tggccaattt       900
     tcggcaataa attatctatg ccataattct tttgagcagt g                           941
//
ID   Mariner-N25_LMi repbase;    DNA;    INV; 682 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-682
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 21-21 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 682 BP; 182 A; 178 C; 167 G; 155 T; 0 other;
     cgaggggtgt tcaaatgaaa aggtacgaaa cgtcttaaca accaaaccgg ttgaaatttg        60
     aatatgccgc tttgggataa cgtagtgcga catctaggga cgcgaagcat gcgtcgtcac       120
     ctccccctaa aaaattcaag gctgtgccct cagcaggcaa ggtgatgctc accgtctttt       180
     tcgacgtccg aggtccgata ctcatcgaat tcctcgagca cggaaaaacc attaacagtg       240
     acgtgtactg tgagacactc cgtagcctac gcaagtccat caagagcaaa cggcctgggc       300
     tgctcacgga gggagtgatt ctgctccatg ataacgcgcg tccacacgtc tccagggtca       360
     cacaaagtgt actggccaag ttcaagtggg agcagcttga gcatccgccc tacagcccgg       420
     acatgtcgcc ctgtgacttc catctgtttg gtccgctaaa aaaaaacatc tcaaagggaa       480
     gcgcttcaac tcggacgacg aactgaagga cacagtagag gactggctct tgtcacagcc       540
     acaggaattc tgggaacagg gaatccttcg gctcgttaaa cagtgggata gttgtgctca       600
     ggcctctggt gattactttt gaataaagac ttcaattata cccacagtgt cgtttcgtac       660
     cttttcattt gaacacccct cg                                                682
//
ID   Mariner-N25_RPr repbase;    DNA;    INV; 496 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N25_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-496
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3307-3307 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~75% identical to consensus.
XX
SQ   Sequence 496 BP; 157 A; 86 C; 93 G; 160 T; 0 other;
     tacacccagt gtgtcaaaga atttttaaga ctggcgcttt cttcgatagt aaagggtatt        60
     atccacaaag aatttgttcc aactggacaa acaattactg gtgagtatta tttaaatgtt       120
     ttgaagcgtt tgatggccag aattcgtcgc attcgtccag aatatcggga tgaaaacagt       180
     tgcaatatga tgcaccggtg tttgttgaat catcccgtat tcgcctgatt tagcaccctg       240
     cgacttctct ttttcccaaa acttaaaatg aagttaaaag gatgatattt cgaccataaa       300
     aatttacatg tgctttggag gcaattccgc aaagtgaact ggaacaggca ttcgaatcgt       360
     tattaaatcg ctgtaacaag tgtattgaag ctggaggggc ttattttgaa taaaaaaaaa       420
     tcaaactaaa taataatttc tagtttctat ttctttttac aggcccattc ttaaaaattc       480
     tttgacacac tgggta                                                       496
//
ID   Mariner-N26_HSal repbase;    DNA;    INV; 1091 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 19.04, Created)
DT   04-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N26_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1091
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 979-979 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1091 BP; 320 A; 225 C; 265 G; 281 T; 0 other;
     cagggtatct gtaaagtccg accccacccc tggatctcgg aaacggcttt aaatatggaa        60
     aaatgtttca gacaaaagtt gtaggatatt gagggggaca catgataaaa atatggactt       120
     gaccttgagt gactttatca aggccaggtc aatgtgatcg atgttttctt aaatggaacc       180
     tcctattttt tattgcatat tcttgtagcc cttgtcgaga cgttttcaaa acactaccta       240
     tttttgtttt ttgcgcaagc cattcccaag atatgaagct tcaaagttga cataccgccg       300
     gcattcgcat tacccaaggt gtaccgcgtg gaggttgcac ggtcggattt acgcctcttg       360
     tgtgtgcgtg tgtgtgtgtg ttgtctgtgt gcgtgtgtgt gtgacagtag agataaggac       420
     cccacggttt catgcccgtg gtgctcattt tgagcatctt ctgcagtaac ggcaagaaaa       480
     taactaatgt aaggggaagg agaagaagaa tggtggagag agacagtgag agagagagag       540
     agagaggggg gggagaattt tgactgaaga aacacataca cacaaaattg gtccttttta       600
     gggccacaac acacgcacac acacagtgga gagggtttgg agtcaaaaaa tactacggga       660
     gtgacgaacc gtggggtcct tatctctact gtgacacaca cgcacacaga caacacacac       720
     acacgcacac acaagaggcg taaatccgac cgtgcaacct ccacgcggta caccttgggt       780
     aatgcgaatg ccggcggtat gtcaactttg aagcttcata tcttgggaat ggcttgcgca       840
     aaaaacaaaa ataggtagtg ttttgaaaac gtctcgacaa gggctacaag aatatgcaat       900
     aaaaaatagg aggttccatt taagaaaaca tcgatcacat tgacctggcc ttgataaagt       960
     cactcaaggt caagtccata tttttatcat gtgtccccct caatatccta caacttttgt      1020
     ctgaaacatt tttccatatt taaagccgtt tccgagatcc aggggtgggg tcggacttta      1080
     cagataccct g                                                           1091
//
ID   Mariner-N26_LMi repbase;    DNA;    INV; 651 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   11-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-651
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 22-22 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 651 BP; 173 A; 134 C; 129 G; 215 T; 0 other;
     ccgggtgatc aaaaagtcag tataaatttg aaaacttaat aaatcacgga ataatgtaga        60
     tagagaggta aaaattgaca cacatgcttg gaatgacatg gggttttatt agaaaaaaaa       120
     gtattgctag acgcgtgaaa gatctcttgc gcgcgtcgtt tggtgatgat cgtgtgctca       180
     gccgccactt tcgtcatgct tggcctccca ggtccccaga cctcagtccg tgcgattatt       240
     ggctttgggg ttacctgaag tcgcaagtgt atcgtgatcg accgacatct ctagggatgc       300
     tgaaagacaa catccgacgc caatgcctca ccataactcc ggacatgctt tacagtgctg       360
     ttcacaacat tattcctcga ctacagctat tgttgaggaa tgatggtgaa catattgagc       420
     atttcctgta aagaacatca tctttgcttt gtcttaattt gttatgctaa ttattgcttt       480
     tctgatcaga tgaagcgcca tctgtcggac attttttgaa cttttttttt cttttggttc       540
     taataaaacc ccatgtcatt ccaagcatgt gtgtcaattt ttacctctct atctacatta       600
     ttccgtgatt tattaagttt tcaaatttat actgactttt tgatcacccg g                651
//
ID   Mariner-N26_RPr repbase;    DNA;    INV; 987 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N26_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-987
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3308-3308 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 987 BP; 322 A; 190 C; 196 G; 279 T; 0 other;
     cactgccgct caaaagttta agaccacctg ttatttatat taattaataa gttttaatca        60
     ctcaaaaccc taattacact tacggtaggc atacgtacaa tggcggtgct tcaaaagacg       120
     tgtataagat tgtaacaggt gacgaatcat ggatatatgc gtatgagccg gaaactagac       180
     agctgtcgac tgtatgggtg tttcaaaatg aaccaaaacc aacaaaagtt gttcgcgctc       240
     gaagcacttc gaaacaaatg gtcgcctgtt tttttcggaa aaactggtca tgtggcaaca       300
     gtgcctttag agcagcagtt ctcaacctgt cagtcgcgac cccgaccact gagaagagcg       360
     agaaccactg ctttagagga acgtagaacg gtcaattctg aatggtacac aaccatttgt       420
     ttgccggaag tctttgatga aataaggaaa acaaacaagc gccgtcggat cattcttcat       480
     caagacaatg ccagctgtca cacatctcgt ctaacaaccg actatttgag cactcaaaaa       540
     atcgaattaa tgggtcatcc gccgtacagt cctgatttgg caccaaatga cttcttttta       600
     tttccgaacg tcaagaataa attacgtgga caacgatttt cgtcggcaga agaagccgtt       660
     gatgcattca aaaaccatgt tttggaggtg tctcaagcgg aatgggaaaa atgctttgac       720
     aagtggttcg aacgcatgca gaagtgtata gatcataaag gagaatattt tgaaaaacaa       780
     taaagtcatt ttcaatgaca aattactgtt tttttattat taggctcaaa atataaatag       840
     tgcccctcgt atattgaact gtgtacttct gttaacatat attaaagctt cattgttgaa       900
     aaacaatgtt agtttgtgtt atttattcca aaatatatcg aatattctca aaaaattgag       960
     gtggtcctaa acttttgacc ggcagtg                                           987
//
ID   Mariner-N27_HSal repbase;    DNA;    INV; 1191 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.04, Created)
DT   04-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N27_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1191
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 980-980 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1191 BP; 396 A; 201 C; 225 G; 368 T; 1 other;
     ctgacaagga gacttacgga agtgtcactc actgatttta atgaaacttt gcacacttgt        60
     agaacatcga aaaataatcg acacgtattt ttttatttct gcaatggtgc gggtttaagg       120
     gtagaaacca ccccttgaac gttaggggtg gtctccaagc atagacagaa aacaatcata       180
     taatttagaa gaaaaaatgc tttcaggggg tttttgatgc agctgattcc gaatctgacg       240
     tcaaaattac aaaattcaaa atggcggatc caatatggcg attacatctc atgacaaagg       300
     ggtggttttc aaagtacaaa tcagaaaata ttacgtaaat aaattaatag aaaaaatgct       360
     ttgaaagttc tcatagctgt aaaattcctt cttaaataac aacgtatgaa aattactagt       420
     gggtaattaa atgtttaata attttcaaat cttattagtt atgcgtggta caaaagcggt       480
     tatttgcaag aaaaaccacc tgagtttgaa gatcccgtag aattttgttt cagagattgt       540
     acagcatttt gcgattcgtg tacakttatt gtcggtaatg aggtgtgcgt ggtgcaagaa       600
     atctttatgc atgacacact tttttacgga atatcatttc tgtaaaaatt attctcaata       660
     aattaataat tttaaaaatt gaggaataca taaatttcca ggatagtgag aggcaagggg       720
     actcactaca aataagcacc ccgaaatagt gagaggcgag gggactcact ttaatcaagc       780
     accccgttaa aataagtaca gaaaggggtt taaaatcgct ctgcaacctc ctcgtggtaa       840
     accctgaaaa ctataatttt tataggctaa ctgcaggcgt atttcgaacc aggagaattt       900
     ttgtaatttt aatcgtcata ttggatccgc cattttgaat tttgtaattt tgacgtcaga       960
     ttcggaatca gctgcatcaa aaaccccctg aaagcatttt ttcttctaaa ttatatgatt      1020
     gttttctgtc tatgcttgga gaccacccct aacgttcaag gggtggtttc tacccttaaa      1080
     cccgcaccat tgcagaaata aaaaaaatac gtgtcgatta tttttcgatg ttctacaagt      1140
     gtgcaaagtt tcattaaaat cagtgagtga cacttccgta agtctccttg t               1191
//
ID   Mariner-N27_LMi repbase;    DNA;    INV; 1129 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 20.01, Created)
DT   14-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1129
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 90-90 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 1129 BP; 350 A; 224 C; 222 G; 333 T; 0 other;
     ctccgttcac cgaaacgaga gacggactgt aaacacagcg aggcgcgtga ccaggggtgg        60
     acaaaacagg ggcgctcgct caatgtcgcc gcatccgttt caggtgtaaa gcgtttgtgt       120
     gtgttatgag gggtgatatt agaggctggc tagaaatttc atcttaaagg accagttgct       180
     gaatagcagc ataagtatta agctttcata ttctatctct ttttctcttt ctcgtctgta       240
     tcgcgcaagt gtaaactcat tatgtcatcc tacattttga atccacgcaa gaagcgatca       300
     aagaagaaat cattaagttc ttaatgtgta taaaacggag ctgttgtgtc cagaacaata       360
     aatgacagat attgttataa aaacagctgc atctacgggt gttggtcgtt cctcagttta       420
     tcatatggta attgattaca aggccacaca ctctttgaag tctccaaaaa acatcacgac       480
     agaagcttac agaaagtgtt gatgactttc acagaaatgt gatacgaacg aaagtacatg       540
     atttgttgtt ttgttgacat agttcttact gtcgtaaacg aaaatgcaga tttgggcaat       600
     tttcagagat tctatgaatt attaaaagaa atgaattttg aatatctgtg gcgtctaata       660
     tcactgctat atagcaaaac acacaaccgc tttacacctg atacagaggt tttaattcca       720
     aattattaac ttatccacca acagccgtaa agtttatgtt cttttattta acgaccggtt       780
     tcggtattgc attaatacca tcttcaggcc ctatacaaat taagttgcaa atcagtgttg       840
     tatccataac atcatgctgt acgtatgtca tacaaaatat aaagaagaat taatgtaata       900
     ccgaaaccag tcgttaaata aaacaacata aactttacgg ctgttggtgg ataagttaat       960
     aatttggaat taaaactcga ccaacagccg cagtccctat tccattacaa catggaacca      1020
     catcgattga tacataggta gcgacattga gcgagcgccc cgtttttgtc cacccctggt      1080
     cacgcgcccc ggtctgttta cagtctgtct ctcgtttcgg tgaacggag                  1129
//
ID   Mariner-N27_RPr repbase;    DNA;    INV; 911 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N27_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-911
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3309-3309 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 911 BP; 263 A; 184 C; 233 G; 231 T; 0 other;
     cgtgggtgaa tcaaatatta accggacttt tctcattgac gctcccaagg tgaagtgagt        60
     aacgtgacgt cataatatat gttgggtggg gatgtaaaga ggagcggagt aactcggtcc       120
     ggctcgccag agcagtttgg ctgttagtag cgccatgtct gaataagagg tacacatgtc       180
     tgttgagcaa cgcattatta ttaaattttt gtcccgggag ggcgtaaaac ctgccgaaat       240
     tttgcgtcga ctaactgcac agttcgctga aaaaacgttt tcaagggacc caagtctacg       300
     actggcacaa aaaattttcc gatggccgag agtcagtgca aaatgacacc catgcacgcc       360
     gacctcggac aagcaccagt gagacgcgaa tattcttgcg atccgtgaga tgattgaagg       420
     agaccgccgg ccttacaata tgggaaattg ctgcacacgt tggaacatcg tatgggagtg       480
     cccaatcaat catttcagat gatttgggtt accgaaaagt gtcggcaagg tgggttcctc       540
     gcctcttgac gaagagcaga aagcaaaccg tcttgccgtc tgtgaaagac ttttgacacg       600
     atatcgaaca gagggggatg ctttcttgag gtcacattgt cacctgtgat gagacgtggg       660
     tgcatcatta cacccctggg aggtcatcac tttgacgacg acgatggtgt agaaacgttc       720
     gtgcgcaatt ggctactgac acgaccagat tcattctttg atgacggaat taaaaaacgt       780
     ccgattcggt ggggaaaatg tgtaaataaa agaggagatt atttagaaaa ataaggtgta       840
     ttcaaaattt tatttactgt accaataaat gttctaaagc aaaagtccgg ttcatatttg       900
     attcacccac g                                                            911
//
ID   Mariner-N28_HSal repbase;    DNA;    INV; 1085 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.04, Created)
DT   04-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N28_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1085
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 981-981 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1085 BP; 369 A; 189 C; 188 G; 339 T; 0 other;
     ctgacaagta acactaccca actgtcactc accaatcgga atgaaacttt gctctcttat        60
     aaagcattga aaaatattga aaatccgttt ttttattttt cctcaaaacg ctttttaacc       120
     ccttgactgt cggaggcaaa ttgtaccttg tgggacaaaa atgcgttgac acaaagtaac       180
     tctgatggtc ataaaactcg gtattctaag gttttttggg tcgctaaatc caaatatgat       240
     atcaaaattt taaaattcaa aatggcggat ccaatatggc ggacaccaat ttcaaaaaat       300
     caacatattt tcataaaact cggtatccta aggttttttt ggatcgctga atccgaatat       360
     gatatcaaaa ttccaaaatt aggataccga gagttcatcc agccaataaa ggcaaattga       420
     aagtccaccc agccaatgaa ggcaagatgg agagttcatc cagcctatag attttcggag       480
     caggtgatta caaatctggg attaattttc caaaattcaa aatggcggat ccaatatggc       540
     ggatatcaat tttaaaaaat caacatattt ttataaaact cggtatccta aggttttttg       600
     gattgctgaa tccgaatata tcaaaatttc aaaattgaaa atggcggatc caacgtggct       660
     gacaccaatt tcgaaaaatc aacatatttt tataaaactc ggtatcctaa ttttggaatt       720
     ttgatatcat attcggattc agcaatccaa aaaaccttag gataccgagt tttatgaaaa       780
     tatgttgatt ttttgaaatt ggtatccgcc atattggatc cgccattttg aattttaaaa       840
     ttttgatatc aattcggatt tagcgaccca aaaaacctta gaataccgag ttttatgacc       900
     atcagagtta ctttgtgtca atgcattttt gtcccacaag gtacaatttg cctccgacag       960
     tcaaggggtt aaaaagcgtt ttgaggaaaa ataaaaaacg gattttcaat atttttcaat      1020
     gctttataag agagcaaagt ttcattccga ttggtgagtg acagttgggt agtgttactt      1080
     gcgag                                                                  1085
//
ID   Mariner-N28_LMi repbase;    DNA;    INV; 992 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-992
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3013-3013 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. TSDs are 2-bp long (TA). Terminal
CC   sequences are similar to those of Mariner-N9_SIn.
XX
SQ   Sequence 992 BP; 316 A; 168 C; 187 G; 321 T; 0 other;
     ggggagaccg gggcacattt tccatagggg caagttttcc aaatccgttt attttcgaaa        60
     caaaccgcta gatgttacca ccggcgatac tgtaggaagt agcaacaaag cacgcttcat       120
     ttacgaaagt ttcagtgttg taccagcagt cacaacgtcg gcagggctgt tttcgtcatt       180
     tttgcaaatg tgagtaaact ttcacgtttt tattgaaact taaaataaac attctagcgt       240
     taaacttatt attttgacat tgcacacact aaaagtgggt ttctttcttc acgtaactgt       300
     gcatttgttt tgtaaatagc ttacactgtt actcatggac gtagtgttat agttccgaat       360
     atggcgacgg ggcacgtttt ccgagtgcat atggggcaca tattccttat tgctttgagt       420
     cttacgccaa gtctaaagca aatgaaaagt gtgtacagtg cacgaaatgg gcgcatggag       480
     actgtacgaa agggaatgtt ccattttttg tttgcttaca ttgtgattca gacaatcagt       540
     ataagtattg ttaaaaatgt ctgtatttgt aaaatattta agtcacatat tttgtaaaac       600
     cattaaatag catttgtttt tatttaatgt ggctattttt actatcctct tttgtaatgt       660
     attgtaaatt catgataaaa atacgtattc agtgaaatca agataattat ctctgtttta       720
     acattgaaag tataattgga atatttgccc ctgtacattt taagtaagct ggaaaacttg       780
     ccccgcatac ggggcaaatt ttccaacgca acatggtcag acaaaaccat ttgctaccaa       840
     gaatgatatt tactattttc aaaaatatct gtacaagact gtaaataaag gtgtaggaaa       900
     tataatgatc cgctgtttac cgcaaaatcg ataaaaataa gaagtacaaa aataaaaatg       960
     taaaatggtg gaaaacgtgc cccggtctcc cc                                     992
//
ID   Mariner-N28_RPr repbase;    DNA;    INV; 1578 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N28_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1578
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3310-3310 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1578 BP; 482 A; 276 C; 321 G; 499 T; 0 other;
     aactgctgga caaaagtatt gcataaaatt tcaaaatgtt ttatttttaa aataatacat        60
     ttgtattttt ttttatggat tcattgtaaa taaactctag cccaatggag aacaagataa       120
     aaccaattcg tttatgtttt cataacgaat aatctgttca aagcttgtga acacaaatca       180
     tctcagtgcg tcatttcatt acctctgtgt aatttctctc tcttacaaag ttttctttag       240
     tgtttttgct atcagttttt ttgtaaagac tgttttaatt tttttacaac attaaatgcc       300
     tcgtcaagga aattattctg aagaaataac ggtttgtgtg gtaacaatgc gcaaagatgg       360
     gattcagcag tcaattattg ctcagagact aggaatgaac caatccactg tttcaaaaat       420
     tttaatgtgc tacagggaga ctgggagata ctcccgaaga cctgccacgg gccgtcccag       480
     gagtacaact cggacagatg agagatttat tcatctaaat gtgttaagga acaggtccgt       540
     ccactagcaa tcaattacgt cacttgatcg ctgatgtccg taatgtccat atttcaagta       600
     ggacagttag acgaaggcta aatgaagcaa acttggcttc caggataccc gctactggcc       660
     ctcttctcac cagagcactt agagttgcca ggctgcatta ttcaagagaa catgtcaatt       720
     ggacaataga ggattggaga cgtgttttat tcacaaatga gtcgagattc accctacatt       780
     ctccagatgg aaggatgaga gtttggaggc gacaaggcct ccaaatgcag aggctaacat       840
     ttctccaaga gtggcttttg gtggaggcgg tgttatggtt tggggaggca taagttttga       900
     cggtcgtaca gacttacaca tcgtggaaaa tgggacgcta aatgcccgga gataccgtga       960
     agaggttctt cagcgatatg tgtgccaatc tatgaaagag tcggtgatga ttttttatta      1020
     atgcagttca atgccagatg tcacactgct cgagttgtcc ttgagtacct acaggatgtt      1080
     gggattcgtc gtttggtttc tccaccgaga agtccagacc taaatccaat cgagcatctt      1140
     tgggacacaa ttggaagacg tctcggactt cgtctgattg cccctagcgc tctcagtgag      1200
     ctagtacagc aattattgaa gaatggaatg agatttctca agagattatc caaaatctaa      1260
     tcgcttcaat gccaaggagg cttgctgcag ttatcagagc aagaggaggt atcactaaat      1320
     attgttgaaa taaataaaaa taagaaagtg ataataaata agaaccattt taattttgaa      1380
     ttttacagat tttttgggtt ggctttattt tttatttagt gcaataaaac caggtttttc      1440
     ttgaattttt ggtagttgtt ctttttttcc tttggattag agttcaacaa catgaatcca      1500
     tacaaaaaaa aatacaaaaa tacattttaa cttcaaatta tattttgaaa ttttatgcaa      1560
     tacttttgtc cagcagtt                                                    1578
//
ID   Mariner-N29_HSal repbase;    DNA;    INV; 1636 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N29_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1636
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 982-982 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~82% identical to consensus.
XX
SQ   Sequence 1636 BP; 554 A; 285 C; 337 G; 460 T; 0 other;
     cagtactgga caaaataaaa tacgcacctc gaacattttt acgtttgcgt gaataattcg        60
     gcaatcttga cagatagaaa agaaatatat tcggacaaaa aaaggtttca tagtttactt       120
     ttaagtttta agtgaaaaaa ttccaaaaac attaaaaatc cttcaatagt caagtctgtt       180
     acatttatta tcatatttac cttggacaaa ataaagtacg cactggagcg tttatttaat       240
     ttcattagta agaacatgta gactacctct cggtgctgct ggaaataaga ggaactatat       300
     aaataaatgt gttaacaatt attctgttag ttattggtgc tgttagaaag agtaatgtat       360
     cgatttttca ccagtaacta tggaaactaa acaaattcct gtgcaaattc gaaacttgat       420
     agttaaagac agaagggact ctccaatagg aaaatcagtc gaaagtacag cataagtgaa       480
     gctgcggtca ggaagatctg gaaaaaattt ctggagctcg gcacagtagc gaataagacc       540
     ggtcgcggac ggaagaggaa gacaaattca gtcgaggatc gcaggatcat ccaggaacaa       600
     agaaaaatcc gactgttacc agtcgtgtaa ttcgggaaaa cgttcaattt aacatttccg       660
     aacgaaccgt acgcaggaga ctccgggaag ctgggctgaa gaacagtttt gcactgcgtc       720
     gccctttgat ccgaaaggcc aataagatca aacgtctgga attcgtcaaa aaaaatacgt       780
     tgataagcca ctggacttct gaaagaaggt gatttggagt gacgaaagta agtttgacct       840
     cttcggtcat aaacaacgac tgcgggtttg gttaaagcct ggcgaaaaac ttttggataa       900
     aaatgtccac aagacggtca agcacggagg aggcagtatt atgtggagtg ttttgcatag       960
     tcaggtctgg gaaatctggt caagatcaat ggtattatga caacagatgt atacattgac      1020
     atcctcaacg aaaatttgga ggagtctctg ttaaagattg gtctgaaaga tgactttatc      1080
     ttccaacaaa ctaatgatcc aaaacatacc gctcgtaaaa ctactgcctt tttccgtgat      1140
     ttgaggatca aactgctgga ttggccagcg caatcgccat atttaaaccc aattgaaaac      1200
     ctgtggtcca ttttagacca gaagattgac aagagcgacg taacgaacaa gatcaagttg      1260
     ttcgaagcct tggaagaagc gtgggaaaac atcgaccagc agcacattcg aaatctggtc      1320
     aagagtaagt ctcgacgttt gcaagcgatc atacaagcaa aaggcggcca tacgaaatac      1380
     tagttttaaa ttttatcttt aatttgctcc ttgttattac ctgcgtactt tattttgtcc      1440
     aaagtaaata tgataaatgt aacgaatttg actattgaag gatttttaat gtttttgaat      1500
     ttttttcact taaaacttaa aagtagacta agaaactttc tttttgtccg aatatatttc      1560
     ttttctatct gtcaagactg ccaagttatt cacgcaaacg tgaaaatgtt cgaggtgcgt      1620
     actttatttt gtccag                                                      1636
//
ID   Mariner-N29_LMi repbase;    DNA;    INV; 1271 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1271
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3014-3014 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. TSDs are 2-bp long (TA). Terminal
CC   sequences are similar to those of Mariner-19_HM.
XX
SQ   Sequence 1271 BP; 433 A; 247 C; 172 G; 419 T; 0 other;
     ggggagagta gtacacagtg aaacaaaaat tacccttttg attgtttcgt ataaaatact        60
     actcacaaaa caaattttct ttatttactt gaaagaacaa tactttgtca atattttgga       120
     acaaaaaata ataattttgc tactaattag taagtgaaat aacaatttta aacaacctcc       180
     gcaaatgttt cactgtgtac cgtgtatagt acacagtgaa acagctgcca tttttttaat       240
     atttattact tgctgagtga cttataaaac ataaatatct ttgttaaata caggtacaaa       300
     cattaacata tactaaattt tgttcagtga atattaagtc caccaaaatt gattggaaaa       360
     cgaatatact ggtggttgga gagtctctta gtaaccatag gcaacgcagg tggcaaaatc       420
     attgcaatgt ccttatgtga aacacatact atgtcttctg caactgggaa tacaaaacca       480
     gtaacttttt tttttgcttt tccgaaggta tgagacttca tactcagtac cacaaactac       540
     tgacttcaag actttagcta caaaatatac attgttttgg aatttcacca aaatgtagtc       600
     accaatcata acgtcccgct tcaagttaaa aagatgtaat gatacactta tctctgtttc       660
     actggatggc cttcatcttt gtcactttct tcatcacttt cacttgaagc tgttttactt       720
     acacaccact tttttattgt tgactctctt catacttctt ttctcctttt cttccagctc       780
     tgtccttttt ctcaaagtct tttcttcaat agctgctcgc tctggtgtta ggaggagtca       840
     tacatccatc tgaggccaat ggtcctgttt cactgtgtac cacatacaag tgtttcactg       900
     tgtaccaaag tcaccataaa ctaaaaagtt agtcacaact cttaatctac gtatctacca       960
     aatttaaaac tggtcaatat atagctaaag atatgtatct tatcacaaaa cataatattt      1020
     cttttagctg tatgttatat cgaaaatatt aaacttacaa agagacgtta actgtaactt      1080
     ctgaccaccg aaaaccaata ataacgtata gaaacaagaa taatcaacca aactgtccac      1140
     cattacagtc aaagatgtat cttatcataa taaacataca aggaaaccaa caagtaagaa      1200
     aaaaattact aaaaacaatt gagatggaat gtttcactgt gtaccgtgtt tcactgtgta      1260
     ctactctccc c                                                           1271
//
ID   Mariner-N29_RPr repbase;    DNA;    INV; 1005 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N29_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1005
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3311-3311 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~73% identical to consensus.
XX
SQ   Sequence 1005 BP; 292 A; 203 C; 226 G; 284 T; 0 other;
     aattttctgc tttttaagaa tgcgtattgt ttttttctta tctttattgt tttaccattg        60
     cgacatgtcg aggaagcaat ttcggacgat tttcttttat gagttcaaac taggacaaag       120
     cgctgctgag acggctcgaa aaataatgct gtttgggcac caatagtgtt agtgaagtag       180
     cagaaacttt ggtctagaaa tttcgatctg gagatagcta acctatcgtt cggcctaaat       240
     actgaagatg atgctttaag gaccatcgtg gaagctgacc catctcaaac ggttggggaa       300
     tcgcggagca actggacgtt agccacactg ctgtttaatg gtgaaaaaac tcgaaaagtg       360
     ggtgcctcat gatttgaacg atcggcaaaa ttgtcacgtt tggaggtttg ttcttcactg       420
     catttgcgca acaaaaacga cccattttgg atcgaatcgt gacttgtgat gaaaagtgga       480
     tcctgtacga caataggaaa cgttctggac agtggttgga caaggctaaa cccctattcc       540
     caaaggcaaa aaccatggta gtggtcggcg gctggtgtca tccactatac atttttgaaa       600
     accggtgaaa ccatcaatgc agagagtatt gtcaagaaat cgacgaaatg taccggaaat       660
     tacgccaaca acagccggca ttggtcaaca aaagggtccg atcctattgc ctcacacgtt       720
     tcacaaatca ccgtccaaaa attgaatgag ttggagatcg aagttctgca tcctccatag       780
     acctctcgcc aacggattat caccttttca agcactggat aactttctta ctggtagaac       840
     cttcaccact gaggaccagg caaaaaggca ttctccgatc cttgaatccc gaggacccaa       900
     tttttacagt gatgggataa atcgacttgt ttcttgttgg caaagatgtg ctgatgctaa       960
     tggtgcttat ttcgattaaa ttgaacgagt attagttgag ttata                      1005
//
ID   Mariner-N2B_LMi repbase;    DNA;    INV; 921 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 20.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2B_LMi.
XX
NM   Mariner-N2B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-921
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 7-7 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 921 BP; 242 A; 192 C; 206 G; 281 T; 0 other;
     cagggtgtta caaaaaggta cggccaaact ttcaggaaac attcctcaca cacaaagaaa        60
     gaaaatatgt tatgtggaca tgtgtccgga aacgcttaat ttccatgtta gagctcattt       120
     tagtatttct ctttaaatgt aaattgaaat aattcgtgca gacaattgtc aaaataccca       180
     attgtttcgt tagtatgtac tgtacttcct cgattcaccg ccagttggcc caattgaagg       240
     aaggtaatgt tgacttcagt gcttgtgttg acatgcgact cattgctcta cagtactagc       300
     atcaagcaca tcagtacgta gcatcaactg gttagtgttc atcacgaacg tggttttgca       360
     gtcagtgcaa tgtttacaaa tgcggagttg gcagatgcca tttgatgtat ggacgtgttc       420
     gtacgcttct caacaacaga ttcggtgacc gatggattgg tagaggcgga ccaattccat       480
     ggcctccacg ctctcctgac ctcaaccctc ttgatttcat ttatgggggc atttgaaagc       540
     tcttgtctac gcaatcccgg taccaaatgt agagactctt cgtgctcgta ttgtggacgg       600
     ctgtgataca atacgccatt ctccagggct gcatcagcgc atcagggatt ccatgcgacg       660
     gagggtggat gcatgtatcc tcgctaacgg aacaatgggc attttgaaca tttcctgtaa       720
     cgaagtgttt gaagtcacgc tggtacgttc tgttgctgtg tgtttccatt ccatgattaa       780
     ttgatttgaa gagaagtaat aaaatgagct ctaacatgga aattaagcgt ttccggacac       840
     atgtccacat aacatatttt ctttctttgt gtgtgaggaa tgtttcctga aagtttggcc       900
     gtaccttttt gtaacaccct g                                                 921
//
ID   Mariner-N2_AAe repbase;    DNA;    INV; 568 BP.
XX
AC   .
XX
DT   09-SEP-2011 (Rel. 17.12, Created)
DT   09-SEP-2011 (Rel. 17.12, Last updated, Version 2)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-568
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2470-2470 (2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 568 BP; 204 A; 98 C; 79 G; 181 T; 6 other;
     cagggtgatt actatatcct gtcagtaaaa taagtaatca tagaaaaaag atggttgnat        60
     gaattttaat taccagtgca tatccagttt nggacatcta taacatttgt cttcgctata       120
     catagataac anattaattt ttttacctca atttccagcc acaagcgttg tttcagaagc       180
     attacagtta acacgcacgt tattcaaaag catatatttt aaccaaaaaa nacatatttt       240
     tttcgctaaa attttccata atcagtctca tnctattccc tagtaagtct aaaagattgt       300
     ggtaacatgc tgtttcaatc aggcaatttt ttcagcggag tttagtcaaa aatacatatc       360
     tgtggaaaac gtgcgtgcca ggtgcaatgc ctttaaaaca acacatatga ctaaaaacta       420
     aggtaaatga aaaaagattt aatctttact ttgtcaaaac aaactttata gatgtgcaaa       480
     acaggatgta caccggaaat taaaattcat acatacatct tttatctacg ancatttact       540
     ttactgacag gaattagtaa tcaccctg                                          568
//
ID   Mariner-N2_ACe repbase;    DNA;    INV; 656 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-656
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 526-526 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~85% identical to the consensus.
XX
SQ   Sequence 656 BP; 249 A; 100 C; 81 G; 226 T; 0 other;
     caggatgttc agcgtaacgg tccgcacgat ttttcagata cttccgacag ttaaaaaaaa        60
     agttaaaagg tgaatattca tctgttttat acaggctaca acatgcgata aaagaattaa       120
     aaaaattttt ttttcataaa aaaatcaaag tcatcttaaa ttttttaaat agcaccatac       180
     aattttttcc ataatattgt aggaatcttc aagacaaatt caaatcacta tcgaaatgtc       240
     acttttattg atgttttatt gattttattg atacttaata tcaaatttgt aacattattt       300
     gtaacagcag tacttacaac ctctgactaa aacacagaac atacatacat acatacacat       360
     acatgtactt atttaataaa atatgcaata aaatcaataa aacatcaata aaagtgacat       420
     ttcgacagtg atttgaattc gtcttgaaga ctcctataat attatggaaa aaaattgtat       480
     ggtgctattt aaaaaattta agatgacttt gatttcttta tgaaaaaaaa atttttttaa       540
     attttttatc gcatgttgta gcctatataa aacagatgaa tactcaccct tcaatctttt       600
     ttttaactgt cggaagtgtc tgaaaaatcg tgcggaccgt tacgctgaac accctg           656
//
ID   Mariner-N2_BTa repbase;    DNA;    INV; 1202 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1202
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 647-647 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1202 BP; 362 A; 239 C; 239 G; 362 T; 0 other;
     cagggtgagc gaaaagtccc cgaccccccc tctaactttt gaacgaattg agctaaggaa        60
     atgaaacttt gggaatgttc ctatctcaaa ggggaccatc ttttgagggg gtcaaaattt       120
     tggtcccccc ctcagggggg gacaggggcc ccccaacttt tttttttcaa atagcaaccc       180
     ctatcttgtg atacctcatt cgaaagagca taaaaaacta agaattttgg cgcaaaccgc       240
     agatcaatat ctcaattttt gaccgagtta tgataggtca aaggtcaaat ttgacctatt       300
     ttcaaaaaat cataactccg gttcaaatta tcgtaaagaa aaaaataaaa cgggaaaatt       360
     taccaaattg tgttcgcttt tacgtaaaaa ttgcagaaat cacttcgatt taattttaag       420
     ggggggctcg gacccccaaa tacgtcaatt caaaggtcat tcaattttcc tgcgaaataa       480
     gccaatttcc tctggatttg cctccacatt atctcagtaa ggtcaaaatc agttcaacat       540
     tacgttggca agtccccaaa tttcgggaaa agttaaaaaa acgaaattta aggcggtcaa       600
     atttgaccgc cttaaatttc gtttttttaa cttttcccga aatttgggga cttgccaacg       660
     taatgttgaa ctgattttga ccttactgag ataatgtgga ggcaaatcca gaggaaattg       720
     gcttatttcg caggaaaatt gaatgacctt tgaattgacg tatttggggg tccgagcccc       780
     cccttaaaat taaatcgaag tgatttctgc aatttttacg taaaagcgaa cacaatttgg       840
     taaattttcc cgttttattt ttttctttac gataatttga accggagtta tgattttttg       900
     aaaataggtc aaatttgacc tttgacctat cataactcgg tcaaaaattg agatattgat       960
     ctgcggtttg cgccaaaatt cttagttttt tatgctcttt cgaatgaggt atcacaagat      1020
     aggggttgct atttgaaaaa aaaaagttgg ggggcccctg tccccccctg agggggggac      1080
     caaaattttg accccctcaa aagatggtcc cctttgagat aggaacattc ccaaagtttc      1140
     atttccttag ctcaattcgt tcaaaagtta gagggggggt cggggacttt tcgctcaccc      1200
     tg                                                                     1202
//
ID   Mariner-N2_CFl repbase;    DNA;    INV; 526 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-526
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 821-821 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 526 BP; 154 A; 101 C; 128 G; 143 T; 0 other;
     cgagggtggt ttgaaaagtc cgtgcaaagt cagagagaat ggcaccactg gtgtgtatcg        60
     aggttatttt cagttagtag catctcttgg aagaacacac accaagtttc agccagatcg       120
     gtctatttct ctgtgtttgg cgttcgtttg aatcgaggaa gtcgagtgat ttccaaaaaa       180
     tggatgaaag agaatttggc cgcaaaattg atggagttaa ggttccaact cgttccgcat       240
     cccccctatt ctccagattt ggctccctcg gactactact tgttccccaa tatgaagaaa       300
     tggctggcgg gaaggagatt ttattcaaac gaggaggtga ttgcggaaac gaatgcctat       360
     tttgcagagt tggaccaatc ctattattcg gaagggatca acaaactgga gcagcgttgg       420
     acgaagtgta taagcctaaa aggagactac gttgaaaaat aaaaaaggtt tatcccgaaa       480
     aattaagtag ttttcatttt tgcacggact tttcaaacca ccctcg                      526
//
ID   Mariner-N2_DSuz repbase;    DNA;    INV; 1086 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   11-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1086
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 144-144 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 1086 BP; 380 A; 170 C; 186 G; 348 T; 2 other;
     cagtgccgaa cttacgtacg taggtgttgg cacacttagc atcttgaact tcaagtgcgc        60
     ttttctacct ttataaatgt gttataaaat tcaacaaaat tattttgaat aatgggaata       120
     tttaacaatc aaattaattt tgtttcattg aattatctct taaaactaaa tttttaaaat       180
     taaaaaccaa aaaataagca gatttagctg cacaaaagtc ttggcacact tgtgtttttg       240
     ataactattt cgttaaaact tagccgattt ggtggtcttt ttttttttct tgccaaagcg       300
     gtataccaag tgatgctaaa ttagtatcat aaaatcgatt tagtatctta agttacacca       360
     aaaatggtta cataaaaaaa taacaaaaat aaataccttt atctctgcga aaaataatat       420
     tttatwttca ggatcagggt cagctgtata ctaacatttg tgaatgggtg ccctgaagcc       480
     gattttatcg ttgggagcct tttatggcgt tctaaaggac tctaaccatg caaaaatgca       540
     tggctcatag gacgatacaa agctttgagt ggccagggag gcgaaaggat cacataaaag       600
     gataatgaca gccctcagat ctactcagca ctgatgactg actgacttta ggataagaag       660
     gtctttggca aggatattta cccagtagcc ttccgaaagg ccatgtcaag tgctaagtac       720
     aagttttttg cagctagaaa aaacmaactg attataaagg tcaagaatat aaccacttat       780
     ggatcgaaaa acggtatccc aaatggattt tgggagctgc aaaaaattgt atctgtctta       840
     aggaaatagt tatcaaaaac acaagtgtgc caagactttt gttcaacaaa atccgcttat       900
     tttttgcttt tttaatttta aaaatgtagt tttaagagat aattcaatga aacaaaatta       960
     attggattgt taaatattcc atttatccaa aataattttg ttgaatttta taacacattt      1020
     ataaaggtag aaaagcgcac ttgaagttca agatgctaag tgtgccaaca cttaagttcg      1080
     tcactg                                                                 1086
//
ID   Mariner-N2_DTa repbase;    DNA;    INV; 693 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-693
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6251-6251 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 693 BP; 243 A; 106 C; 89 G; 255 T; 0 other;
     caaccctagt caaaagtatt ttctcaaatt tgaatgttaa ctgtactcat attttgaact        60
     tataatataa acattttggc acctatggaa agagcacttc aattccgttt aaatgacaca       120
     aaaattttct taacccatta agcacccttt gaaaagtgag caaattagac aatttttttt       180
     gaaagtaaaa ttttcaactt tttccctggg gcttaaaaca aaaatgtttt gatgcaaagt       240
     tgttccccaa tcaaaattaa taataactgc aaaaaaaaaa atttcaaaat atttttcctt       300
     gtatttttta tgattttttg aaaatagcta tttttgccgc tttttcttcc ttttcataca       360
     aaattttact gagaggtctc cattcaaaaa atcataaaaa atacaaggaa aaatattttg       420
     aaacattttt ttttgcaggt cttattaatt ttgattgggg aacaactttg catcaaaaca       480
     tttttgtttt aagccccagg aaaaaagtcg aaaatttgac tttcgcaaaa tttgctcact       540
     tttcaaaggg gtcttaatgg gttaagaaca tttttgtgtc atttaaacgg aattgaagtg       600
     ctctttctat aggtgccaaa agtttatatt attagttcaa aatataagta cagttaacat       660
     ttacatttgt gaaaatactt ttgaccaccc ctg                                    693
//
ID   Mariner-N2_HSal repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 955-955 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 868 BP; 307 A; 127 C; 126 G; 308 T; 0 other;
     cagggtgtcc cattttaaag gacccactca aatatctcag aaacactgcg ttaaatcgaa        60
     aaatgcttaa gacaaaagtt gtttagcttg aagggggaca taggacagcg atagcatttt       120
     gtttatagat ggcgccactt tcgagatatt cactgattat caattttctt aaatggaaat       180
     cccagttttt tattatatca tctttttcta ccaattaatt tgaacaactt ttgtctgaaa       240
     cattttttta tttgcttaat atattttgag atatttaagg aaaacttggt aacttttcca       300
     acatttacct tacgatatct cactaactat tcgtcgaaag aaaaaatagt attagacttt       360
     tttactttat ttactatcaa gaatatatta ctataatagt gccctaactt ttattaactt       420
     atcgaccttt ggaaatttca aaattattaa attaataaaa gttagggcac tattatagta       480
     gtatattctt gatagtaaat aaagtaaaaa agtctaatac tattttttct ttcgacgaat       540
     agttagcgag atatcgtaag gtaaatgttg gaaaagttac caagttttcc ttaaatatct       600
     caaaatatat taagcaaata aaaaaatgtt tcagacaaaa gttgttcaaa ttaattggta       660
     gaaaaagatg atataataaa aaatttggat ttccatttaa gaaaattgat aatcagtgaa       720
     tatctcgaaa gtggagccat ctataaacaa aatgctatcg ctgtcctatg tcccccttca       780
     agctaaacaa cttttgtctt aagcattttt cgatttaacg cagtgtttct gagatatttg       840
     agtgggtcct ttaaaatggg acaccctg                                          868
//
ID   Mariner-N2_LHu repbase;    DNA;    INV; 924 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.02, Created)
DT   15-AUG-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Linepithema humile, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-924
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 376-376 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are 95% identical to the consensus. ~35bp TIR.
XX
SQ   Sequence 924 BP; 273 A; 186 C; 220 G; 245 T; 0 other;
     cagggtgcgt cagctaaatc cggacaaaat taaattagaa ttccttgcta cgtgtgaatt        60
     taggaacaaa tgattgttaa tgttcgcgtt agtcaaatgt ttgtgtaaaa cgtgtataac       120
     ctttaaaatg tccgagtcaa taaaatcaag tgcggaatac aatcgaagag cggcgataat       180
     tgaagcgctt cgcgccggac gttcgccgat cgaaattatt cggttcttca agtactcgag       240
     atcgacaaaa gtgagtcgaa ggaacgaccg ttggctcgcc cgtgatcccg aggatgtccc       300
     cataataggc aggacgaagt ttccagccaa tgttcacgtc ttaagcgtcg tctctaatga       360
     gggtgatgtc atgccgccgt atttctttaa aaagggagaa accatcacga aggaggttta       420
     cctccggatt ttgaggactg taataaagcc atggatggaa actacggcct ccgggaggcc       480
     gtacattttt caacaagacg gtgcaccggc tcacacaagc caattagtgc aaaattggct       540
     taacgataac gtggatgcgt tttggtccaa ggaattctgg cctcctaata gtccggattt       600
     aaacccccta gattattatg tttggggcgt tattgaaaga ttgtctaaca agtccaggca       660
     ccccaatgtg gcaactcttc aagccgctat tgaagcagca ttcgttgatt tagacaagga       720
     gcagttgaaa agagcgtgct cgcgcttcag gcaaaggatt gaagcagtga tcgcagcaaa       780
     cgggggttat atagaataat tgtactcaga gaggatccct taagcaacgt acaaaaaaat       840
     atttcataat ttcaagtttt ttctgagtct aaagagtgtt ttaataaaca atttgttttg       900
     tccggattta gctgacgcac cctg                                              924
//
ID   Mariner-N2_LMi repbase;    DNA;    INV; 1085 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1085
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 78-78 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1085 BP; 280 A; 237 C; 241 G; 327 T; 0 other;
     cagggtgtta caaaaaggta cggccaaact ttcaggaaac attcctcaca cacaaagaaa        60
     gaaaatatgt tatgtggaca tgtgtccgga aacgcttaat ttccatgtta gagctcattt       120
     tagtatttct ctttaaatgt aaattgaaat aattcgtgca gacaattgtc aaaataccca       180
     attgtttcgt tagtatgtac tgtacttcct cgattcaccg ccagttggcc caattgaagg       240
     aaggtaatgt tgacttccgt gcttgtgttg acatgcgacg gatgaggctt cattccaacg       300
     tgatcaaatt gtaaattttc acaatcaaca tgtgtgggct gacgagaatc cgcacgcaat       360
     tgtgcaatca cgtcatcaac acagattttc tgtgaacgtt tgggcaggaa ttgttggtga       420
     tgtcttgatt gggcctcatg ttcttccacc tacgctcact ggagcacgtt atcatgattt       480
     catacgggat actctacctg tgctgctaga acatgtgcct ttacaagtac gacacaacat       540
     gtggttcatg cacgatggag ctcctgcaca tttcagtcga cgtgttcgta cgcttctcaa       600
     caacagattc ggtgaccgat ggattggtag aggcggacca attccatggc ctccacgctc       660
     tcctgacctc aaccctcttg actttcattt atgggggcat ttgaaagctc ttgtctacgc       720
     aaccccggta ccaaatgtag agactcttcg tgctcgtatt gtggacggct gtgatacaat       780
     acgccattct ccagggctgc atcagcgcat cagggattcc atgcgacgga gggtggatgc       840
     atgtatcctc gctaacggag gacattttga acatttcctg taacaaagtg tttgaagtca       900
     cgctggtacg ttctgttgct gtgtgtttcc attccatgat taatgtgatt tgaagagaag       960
     taataaaatg agctctaaca tggaaattaa gcgtttccgg acacatgtcc acataacata      1020
     ttttctttct ttgtgtgtga ggaatgtttc ctgaaagttt ggccgtacct ttttgtaaca      1080
     ccctg                                                                  1085
//
ID   Mariner-N2_PBa repbase;    DNA;    INV; 3127 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   07-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3127
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 628-628 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 3127 BP; 1107 A; 446 C; 475 G; 1099 T; 0 other;
     caagggaagt atcggaagtg tccctcccct cccgatttta atgagcttcg agtatgttaa        60
     aatatggaca aaaataagag acacatattt tttttatctg cgttctcgaa cgttaagggg       120
     gtgaaaccac cccttgaaaa aaatcggttt tttttcctga gtaaatatcg tccaaaccgt       180
     taaagatatc aaaaaaagtt ttaaacaaaa gttttacggc tgcaagtgta ctttacaacg       240
     acgtattcga atttttcaaa aatgttatat ttttgagccc ccccatccct cccccaattt       300
     taaaaaattt ttaaattttt ataaggacat gaattcaaga gcattttatg ctgaatacaa       360
     cggatatata ataaagttat tttccgaaat cgcatttttg ggaaatgagc gagaaatacc       420
     tctatatacg cgctccatac gtattcatct cataccgcgt tggatgcgcg ggacaacgtt       480
     aaaggtgaat atgatgcagt tcgtcagtac tgtatcagtg caacaataat tattgaaata       540
     agagcttttt ttataataat aataatgaga atagtaataa tagtaataat gatagcaggt       600
     tttgttaaac ggaagtcaaa tatttttgat gaggtattag aaaacgtacg aagcactttg       660
     gacatttaga aacaagttac aaataaagaa atgattataa aatatgactt atttaatttt       720
     ataaaatatg gtttatttaa ttttggtcgt acggcagcta tcgcaatgct tacggtagct       780
     attgcaatgt tatgaatata ttttattgat caacatttat gtttcgtgtc gtaatgtctt       840
     attatcgcaa cgctacgcaa gaaatatatt tgctaaggca tagctttatt tgcatatatt       900
     atttacatga gcattgtttg catgaacatt agtataaaag aatgcaaatc gcagcgaatt       960
     cgcagtttta taattaattt cattctctaa agtattatcg attgatacaa gtgagagata      1020
     cgagcttaat aaatgaatat gtacttaaaa aaaagttatg aaagttttta ttgctgttta      1080
     tattttcata cattttttat tttataaatt ctttaagttg aaattatagt tatttatttt      1140
     aattaactta agaatttttt aatcaacaat ttattaattt tgataatatt ttttaaagat      1200
     ttttagacat agtaatacat gatctatata ttatacaaga ttattcattc ttcttgttca      1260
     acaaattttt tgtaaaataa tcagttatta caaagataca ttaaattctt attataaatt      1320
     agctatttaa ataagtaatt atttaaataa ttaacataaa atggaagagg aagaatcatt      1380
     ggattttcaa accgcatttg atatatcaga tgcagaaaaa atagaactca ctgacgacga      1440
     agaaaattac gcatacaatg taaaaaaatg ttatgtaacg tcgataatat ctcggtaaaa      1500
     tatataaaga aaagcagttg aattttgaag aagtagtaag acaaattcaa gaagaattga      1560
     aggagtgaaa caaaggtttc gaaattttta tcaaaatttc acccgatgct tatgtaaaca      1620
     atatatgcaa ataaaactac atcttcacaa atctatttct tgcgtagagt tgcgataata      1680
     agatattatg aaatataaat gttgatcaat aaaatatatt cataacattg caatagctac      1740
     cgtaagcact gcaatagctg ccgtacgacc aaaattaaat gaacgatatt ttataaaaat      1800
     aatcatttct ttatttgtaa cttgttttta attgtccacg gtactgcata cattctttga      1860
     tatatcatca aaaatatttg aatattgttt aataaaccca ctatcattat taagattatg      1920
     attatgctta tgattattat taataagagg aaagagaggc caatgaacga gcgaaaatga      1980
     aatgacgtga caaaaacaaa ttcgagtaaa caatatttat tgtaaaaaca ataattagca      2040
     gtgtcacctt caatataaat ttgatattgt acgtttcggc ttcacggggc cttcttcagc      2100
     aatttttctt aacaaaaacg ataaaaaacg aagggaaatt ttaaatgcat aaaaacttat      2160
     gcgtctgact gttaactctt aatttcactc ttataattat tatatttttc acatttttat      2220
     aatcttttat ctatttgcgc ttgaatctaa atgtgtgttc tataatttca ccgaaccagt      2280
     ttttatgcat ttacaattcc ccttcgtttt ttatcgcttt tgttaagaaa aattgctgaa      2340
     gaaggctccg caaagccgaa atggacaata tcaaatttat attgaaagta actctgctaa      2400
     ttgttatttt tacaataaat attgtttatt cgaatttgtt tttatcacgt cacttcgttt      2460
     tcgcttgttc actggcctct ctttcctctt gttaatttat acgagctgtc tgatacaatt      2520
     ttgctctgat gattattatt attataacaa aaagtatttg aaaagtataa aacaagtatt      2580
     aaaaaaaagc tcttatttca ataattattg ttgcactgat actgtactga cgaactgcat      2640
     catattcacc tttaacgttg tcccgcgcag ccaacgcggt atgagacgaa tacgtatgga      2700
     gcgggtatat agaggtattt ctcgctcatt tcccaaaaat gcgatttcgg aaaatgactt      2760
     tattatatac cgttgtattc agcataaaat gctcttgaat tcatgtcctt ataaaaattt      2820
     aaaaattttt gaaaattagg gggagggggt gggggggctc gaaaatataa catttttgaa      2880
     aaattcaaat acgtcgttgt aaagtgcact tgcagccgta aaacttttgt ttaaaacttt      2940
     ttttgatatc tttaacggtt tggacgatat ttactcagga agaaaaaacc gatttttttc      3000
     aaggggtggt ttcaccccct taacgttcga gaacgcagat aaaaaaaatg tctcttattt      3060
     ttgtccatat tttaacatac tcgaagctca ttaaaatcgg ggggggacac ttccgatact      3120
     tcccttg                                                                3127
//
ID   Mariner-N2_PPo repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-178
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2749-2749 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. TA TSD. ~30bp TIR.
XX
SQ   Sequence 178 BP; 53 A; 29 C; 34 G; 62 T; 0 other;
     ttagggggac cggaaagtaa tgtcgtttct gcgcatgtcg atatttgttg tctttatcag        60
     ctcatagtgt attcgaaggc gtgcaaagtc tttttaaggt tattgtgact tgtttacttc       120
     caaaaattaa tataaattga aaaaacttaa atgaaaaaac atctttccgg tcccccta         178
//
ID   Mariner-N2_RPr repbase;    DNA;    INV; 1673 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1673
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3282-3282 (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are determined. ~97% identical to the consensus.
XX
SQ   Sequence 1673 BP; 624 A; 254 C; 279 G; 515 T; 1 other;
     cagtgactcc cattaatatt gggacagtac atacagaagt taaaaattga cgaaaattaa        60
     aagtggcacc catttattca aatttttata aattcatttc attttataat tactattaat       120
     taaataaaaa ctatttaaat aagtacataa aaatgttttg gtagattaaa aaaaatatat       180
     ataataataa gagcaaattc tacctctcat aaatattggg acactattat aatttatagt       240
     ttgtccaagg ttttgcccga atatttatac aatttgtaaa tatatacctt aagcatatat       300
     tcaatatgaa attaataatt aaattagttt atataaatca agccaggtgt aacatgtcgc       360
     gcaaaaatac aaatacaacg attgaacaaa gaaaaattgt aatttctttg cacaaagaca       420
     ataaaaagtg ttagagagac agaaaaactg atcggaccta aaacatctac tgcgtggaac       480
     atcattcagc gttaccaaaa agaaaaaaga attgtttcaa ccccacaaaa aggccgtcct       540
     caactgctct ctgagagaga gcagcgttat atattaaaag aattaaaaaa gatcaccgac       600
     ttagtgctcc aaaacttcwa tgtgaaattt ttgacatgtt cagagagcaa aaaaggagca       660
     gaaacagttc ggagagtgct aagaaaactc gactatcatg gtagagtagc ctggaagaat       720
     ccttttgtca gtaagataaa tcgtgttaag agagtgaaat ttgccgaaaa atatttcaat       780
     gtaaatagtg acttttggaa tgatatactc tagcgatgaa tcaaaattta atgttttcca       840
     gtcagatgga agggttatgg tctggaggaa agcgaatgct gaactcgaaa agaagaattt       900
     acagccaact ttaaagggtt ttaaagctgc acctccgggt ggaggtgggt cagttctggt       960
     ttggggctgg atgtccgcat caggatttgg agaattagtg tttattgatg gaatgatgca      1020
     caaaatggtt tatagtaata tattaaaata taatttgaaa aaagtgccca aacatttggt      1080
     attttagggt cttctaaatt ctaccaagac aacgacccca aacctacggc ttgggtgata      1140
     cgtcagtgac tgttatacaa ttgcccaaaa gtattccaaa cctctccgca gtcaccagat      1200
     cttaatccca ttgaacattt atggcaatat ttagccagtg ctttaagtaa acgagtaata      1260
     tctaacaaaa atgaattaaa acgatgtttc ctggaagaat gggaaaaaaa caccacctga      1320
     attaaccaaa aacttgtttc acctatgcct gatcgtttga gggctattgt aagtcaaaaa      1380
     gcaattatta aattattacc aaccaattat taaatagtag gagattttaa atattgaaca      1440
     tttaaactct agcacttctg gtgtcccaat atttttgaga gccttatttt acactttttc      1500
     aaaaagtgct acctaacagt ttggaatttc atcgatttat acttatatat aatttctaca      1560
     gatgttgcta atgtaattta aaaaaaaaaa aaattccaaa cttttgtatg ttgttttcat      1620
     tttcctttta aatcattttg taataggtgt cccaatatta atgggagtca ctg             1673
//
ID   Mariner-N2_SIn repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.02, Created)
DT   16-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 344-344 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 868 BP; 261 A; 165 C; 187 G; 255 T; 0 other;
     ctactgtgtc caaaaagtaa gaccagtttt caatttaaat cgcgcgggta aaccgcacat        60
     cataaatatt tttttctaag ttggcagcat tgtgacagac atctgtgaca aatttcatgt       120
     caaaacattc attagttttt gctttacgct tggttttgta cgacgctaaa agtgcattcg       180
     gcgattttta caatgtctaa ttatattgag caaagaagtt gcattaaatt ttgtttgcgg       240
     aatgaaattt cgggtgcaga aacgttcagg atgttgcaga aagccttcgg ggaccatgct       300
     ttgtcggaaa ggaatgttta caagtggtat aaacagttca aagaaggtcg tgaaagtgtt       360
     gaagacgaag agcgttccgg acgaccatca acctctaccg atgaacaaca cgtcaagaaa       420
     atcgaagaac ttgtgcttgc taatcgtcga atgactgtta gaaaccttgc tgatgctgtg       480
     ggcagacaat tcttggtttt tgcaccacga taatgcacct tctcacactg cactcgttct       540
     tcgtgacttt ttcgccaaaa attcgatcca tatcgttcca caaccaccgt attcgcctga       600
     tttagcaccg tgtgacttct ggctattccc gaaactcaaa agaccactgc ggggaaatcg       660
     ttttgagacg atagaagaga tacaacgtga atcgctacgc gctctgaagg ccatcccgga       720
     aggcgacttt aattcttgtt tcgaggactg gaaaatacgt tggcataagt gtattgtgtc       780
     gggaggggat tactttgaag gcgacaaaat agatttgaaa aaataaataa atattttttg       840
     aaataaataa aaactggtct tacttttt                                          868
//
ID   Mariner-N30_HSal repbase;    DNA;    INV; 898 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N30_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-898
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 983-983 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 898 BP; 242 A; 210 C; 211 G; 235 T; 0 other;
     cgaggtatat ccagaaagta agaatacaag ggctgtgtaa gacgtaggga tttttttgtt        60
     gcaaagttgg cacccgtgac gtgtagaggg gttcgtaacg gtcaaaataa gccatcgagc       120
     gcctcagtca gttacgaaat gtcgtcgcag cagcctaata cgtcaaccag tgcgtcctcc       180
     gttcgctcca cctacagcag gtgtgagatt cgttcagtca ttcggttcct cacttcagtc       240
     tcattctctt cagtctcagt atgacagtct ctgcagtggc gccataccca ttctccatcc       300
     tccaaaaaat tcaaagttca atcttcagag aggaaaatca tggcgtccgt gttttgggac       360
     cggaaagggc tcttgttggt cgatttcatg cccaaaggga ccaccatcaa tgctgctgca       420
     tattgtgaga ccctaaagaa gttgagaaaa aaaatcaaag acaaaaggag gggaatgctg       480
     actcgtggtg tgtccctcct tcaggacaac gccagacccc ataccgcccg gctcactcaa       540
     gacctgctcg tgtcgtttgg atgggacatt gtgactcacc caccctactc ccctgacctg       600
     gcaccctcgg attaccatct tttcaataaa ttgaaggagt tcttgggtgg acagcgcttt       660
     tcgaacgatg aggaggtcat gcagactgtg acaaagtggc ttcaggaggt ggagcgaacg       720
     gtatacgacg agggtataca aaagctggtg cccaggcttc aaaagtgcat tgacctcaac       780
     ggcgattatg tggagaaata ataacatatt ttggcacata ccatgtaaat ttcaataaaa       840
     tatattcatt tttcgatttt aaacaattgt tgtattctta ctttctggat gtacctcg         898
//
ID   Mariner-N30_LMi repbase;    DNA;    INV; 1343 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 19.11, Created)
DT   22-JUL-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1343
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3015-3015 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. TSDs are 2-bp (TA) long. Terminal
CC   sequences are similar to those of SMAR21.
XX
SQ   Sequence 1343 BP; 390 A; 270 C; 308 G; 375 T; 0 other;
     cagtaaaact tcccttaacg gacacttccc aatagcggac tcctctcaat agcggacatt        60
     ttaaaattcc cctgcaaaac aacattagcc cttatgctaa aattattccg aatagcggac       120
     attctcaata acggacacgg acaccgtaat atgtccccca acaacaatca aaacttccaa       180
     ataacggaca gcgtgaaaga atcagtgcac tcttgcgtgt caaaagtctg agtgtcgtca       240
     attctaacgt gtgttgattg aagatttagc gtgtttcttg ttcgtattgc gtggtttcat       300
     ggcattgcca tctattggaa cttcttggaa gtacagtacg tacagtattg gttcatgccg       360
     cgcagaaaca gacgatgaga gtgcggcgcc aaacactttc cgcctgttgt cggtacatca       420
     gacgaagcca agcgttcaat agttgacgca ctgttgtgtt gcagcgtggg cttgggtagg       480
     acaggggaga ggcgataggt gtatcgaatg ttttcattcg atggctgcca cagcctggtt       540
     tcaaaagtca aaagctttgt ctaatgcgtc ttgagtgttt tcgatttgaa gtttcgtgct       600
     cgcgctacat gctttaaaat gcccagagat aaaagtggcc aaataccaaa aaagaatcat       660
     tcgagtgccg gtaaaaaaaa aaagaaaaaa cgctgactac gggcgcgaaa cgaaaaaaga       720
     atgtgatctc gttgtaacaa aagcttcgca ctttgcagaa aattgatgct ggtgagccac       780
     ccgcgaaagt tgctgcggat ttgaacgtcg gtatgagtgc gattactgat tgaaaaacaa       840
     attgatcaga tatttaaaca ttttgttcca ttcaagcgtc aagcagcgca atgaaatctc       900
     gaagaagaat gagaaaaggt tcatatcctc agttagaaga ggttttactt ttgtggcatg       960
     aacaaataag agccaaaggc gtgctagtta aggtcctcta cttcgtctaa aagcgatgac      1020
     tttttatgag ctcattgaag gaaaggagta agaattcctc ggaaattatg gctggctgga      1080
     tcggttcaag aagcggcgtg gcattcgcac gtttacgatc gtacttagcg gtattgacgc      1140
     aattcggtgt gtttcacgcg tgaaaacagg agactttggt tttatccgag attttcgtta      1200
     tccgaaccgg ccgccatacc gatcatttcg gataaacggt agtttactat tttgtatttt      1260
     atccttttct taacagcgga cacttcttaa aagcggacag ttttattttc cccattggtg      1320
     tccgttattc agaagtttta ctg                                              1343
//
ID   Mariner-N30_RPr repbase;    DNA;    INV; 940 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N30_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-940
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3312-3312 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 940 BP; 265 A; 220 C; 204 G; 251 T; 0 other;
     cgagggttgg ctgaaaagta atgcacacat gcttgccgag cgcgaacgaa gagcttcaaa        60
     aagcgcgcga ggtggcattt ggaagtcaca tttcccctta ttacgtatgc gcagtttgaa       120
     ctcgctgcgt tcagccagtg tatttttaga cgccgaagta tggacacgtg tactggtgct       180
     atgtcactgc gagataaaca gcgtgctgtt atcgactttc ttttgaatat tgtgacaggg       240
     gacgaatcat gggtccatca ttacgacacc cagaagagaa aaggcagagc actgaatatc       300
     gacatgcgtc ttcacctcgg ccgaaaaagt tcaaaacaca accgtccgca aaaaaaaaaa       360
     aaaattcttc tgactgtgtt ttgggatgct caccaagttt atgtgaccga ttttcctgga       420
     tccaggggca acggtaaatt cttctcggta cgtacagact ctaagaaacc tccgacgtcg       480
     agtttgtcgt gttagaggca gcttggcacc aataatcttg caacatgaca acgctcgtcc       540
     tcacacctcg cgcggcgaaa ctgcagaggc tctggaaaaa ctgaagtttg aaccaattcc       600
     acaccctcct tattccccgg atcttgcccc ctgcgatttt tatttgtttc ctctactcaa       660
     gagagacctc aagggtaatc actactcctc agacgatgag gtgaaggcag ctgtcaattc       720
     ctggattcaa gaaaagtcaa aagaattctt cagtgacgga atgaaaaaac ttgtttcacg       780
     ttgggagaaa tgtactagcg ttaatggtga ctacattgaa aagtaataca taattgtgaa       840
     gcttaagaat tgcactttaa tatactttct gtccgaactt gataactctt ttctttcccc       900
     ctctcctagc atgtgtgcat tacttttcag ccaaccctcg                             940
//
ID   Mariner-N31_HSal repbase;    DNA;    INV; 565 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N31_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-565
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 984-984 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~81% identical to consensus.
XX
SQ   Sequence 565 BP; 196 A; 87 C; 87 G; 195 T; 0 other;
     cagggtgtgt caaaaggtaa ggtcaaccaa ctaggaagtg aaagaggagc ttgagtagaa        60
     tacataatgt atataaactt tttttgtatt ctctatggtt tagtaaatac aacgctttat       120
     acggatatag aaaatgttga aacctcttaa tatttcggaa aatatgtatt ttcgaaaaaa       180
     atgttccata caaaagttgt aggattttaa gtgacgtatt acacaataaa agtagtatga       240
     ccttgaatag cgttttcaag atcacgtaaa gatttaaaat tttaaaattt caaggtaatc       300
     tttacgtgac cttgacaacg ctattcaagg tcatactaat tttactacgt aatgcgtcac       360
     ttaaaaccct acaacttttg tatggaacat ttttttcgaa aatgcgtatt tttcgaaata       420
     ttaagaggtt tcaacatttt ctgtacatcc gtataaagcg ctgtatttac taaaccatag       480
     caaatacaaa taaaagttta tatattatta ttcaagctcc tcttttacct cctagttggt       540
     tgaccttatc ttttgacaca ccctg                                             565
//
ID   Mariner-N31_RPr repbase;    DNA;    INV; 968 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N31_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-968
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3313-3313 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 968 BP; 317 A; 186 C; 184 G; 281 T; 0 other;
     ttagggggac cgaaaagtaa tcaaaattta ttttttctgg cgaaaaacat ttatttatta        60
     aagaaatctt aagtgctaat caacaaaata atttccatca ttttctaaca ctttttgcca       120
     gcgaaaaggc aatcgttcga ttcccttttt aaaaaagtcc ttcgattttt cattgaagaa       180
     cttttccaag tgcgttttca cttttccaac attggtaaat ttttaacggc gctcgatcaa       240
     cggcgtacca tcagcgcgtc tcttttgtct cggtatgaag ctgatccatt tttgcgacga       300
     attgtaactg gagatgagaa gtgggtgcta cacaacaacc ctgcacgaaa aagacaatgg       360
     ctttctcccg gaaaagcacc tgttccgaca cctcgaccgt cactaacgat aaagaaggtc       420
     cttgtgtgtg tgtgtgtgtg gtgggatttt tctggaatca tacactatga attgcttgaa       480
     cctggtcaga ccgttacagc gacagtgtat tgtgaacaac tcgagcgaat gaaacaagag       540
     ctcataaaaa aacgatctgt tttggtcaat aacaaaaaaa aggatccttc aacacgataa       600
     cgcgaggcct cacgcagcaa aaagaacaca ggaaaaaata agggagcttg ggttagaact       660
     tttaccccat ccaccctatt caccagatct cgcgccgtcg gattatcacc ttttcagatc       720
     gttagagcat acattaagag gtaaaaaatt taccaatgtt ggaaaagtga aaacgcactt       780
     ggaaaagttc ttcaatgaaa aatcgaagga cttttttaaa aagggaatcg aacgattgcc       840
     ttttcgctgg caaaaagtgt tagaaaatga taggaaatta ttttgttgat tagcacttaa       900
     gatttcttta ataaataaat gtttttcgcc agaaaaaata aattttgatt acttttcggt       960
     ccccctaa                                                                968
//
ID   Mariner-N32B_HSal repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   02-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N32B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-238
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 985-985 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. It is a shorter variant of
CC   Mariner-N32_HSal.
XX
SQ   Sequence 238 BP; 68 A; 37 C; 40 G; 93 T; 0 other;
     ttaggttggt gcaaaaataa ttgcggtttt tatcatttta agtttggcgc cgatttttct        60
     agttaccgtt atcttttcca gaattctatc ttgtaggaat aaacaaactt gtttcccgtt       120
     gggagaaatg tgtgcaggcc aatggtcttt attttgatta ataaatataa tttttaactg       180
     atatatgcgt ctttatactc gatacgtaaa aaccgcaatt atttttgcac caacctaa         238
//
ID   Mariner-N32_HSal repbase;    DNA;    INV; 583 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N32_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-583
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 986-986 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 583 BP; 180 A; 92 C; 114 G; 197 T; 0 other;
     ttaggttggt gcaaaaataa ttgcggtttt tatcatttta agtttggcgc cgatttttct        60
     agttaccgtt atcttttgtt atagtcatgt gatacatcat tgtaaacaat gaaattggca       120
     ctactgattt cagcttatgt ctattgtttt cattctttag tattgttgga tataacctct       180
     taaattagtc atggaaaaaa agcaaattcg cgcgattttg ttgtatgagt ttaaattggg       240
     acgtaaagca acagaaactg ctcgaaatat caaatttgtt tttggcgaag agtcaattag       300
     tgaacgtaca gctcaacact ggttccaaaa atttcgtgat ggaaacgaaa gccttgaaga       360
     tgaggagggt cgtggacgtc cttcagctat agacaataat gatttaagaa ccattattga       420
     agcggaccca cgtaaaacaa ctcgagaggt tgtttcccgt cgggagaact caatgtgtgc       480
     aggccaatgg tctttatttt gattaataaa tataattttt aactgatata tgcgtcttta       540
     tactcgatac gtaaaaaccg caattatttt tgcaccaacc taa                         583
//
ID   Mariner-N32_RPr repbase;    DNA;    INV; 865 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N32_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-865
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3314-3314 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to consensus.
XX
SQ   Sequence 865 BP; 244 A; 156 C; 215 G; 250 T; 0 other;
     cgaggcgtgt ttttttaagt aagtaccgtt ttgaaattcg gccgctgcag tgctgcggtc        60
     gcttgcttga ccagacgcta ttacggaaac attcgaccgt gtttacgttt gtttgtgagt       120
     atttaaaatg cctccgccga ttgagaatcc cgccgactgt gaaatacgcg ctgtgattcg       180
     ttttcttagt gctaaaggtg tgaaagcggc tgaaattcat cgtgagatca gtgaagttta       240
     tggagaaaac attatgagca gtggaatggt acggaaatgg gttagagctt ttaaagatgg       300
     ccgcacgaat gttcatgatg tggaacgaat tgggcgacct tcagtcatta ctgaagattt       360
     ggtgcagaaa gttgacgaaa aagtgaaaga gaacagacgc tttacgattt catcgttatc       420
     aaatgagttt cctcaagtgt caagaagtgt tctctatgaa attgtgaccg gacgcttaaa       480
     ttatcgaaag ttgtgttcac gctgggtacc gacaagatct catggatatt tgctgggaac       540
     aacttgatcg ccctccgtac agtcccgatc tagcgcccag tgctaccacc tgtttctgca       600
     tttgaagatg catctgggtg gtcagcgcca cgacgacgat gatgaggtca aaacgaccgg       660
     ttgcagtggt tgtcaaatca ggcggcagac ttctatgagg attggattca aaagctggtg       720
     atacgataag tgccttaata ttagtggcaa ttatgtagaa aagtagatta aggtacaggc       780
     tttcatgtaa aaataaaatt gttaagaaaa gtatacttgt ttttctttta tttcaaaacg       840
     gtacttactt aaaaaacacg cctcg                                             865
//
ID   Mariner-N33_HSal repbase;    DNA;    INV; 726 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N33_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-726
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 987-987 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 726 BP; 201 A; 155 C; 167 G; 203 T; 0 other;
     cgaggtgtgt gagaaaagta atgagactga caacactgcg agcgatctgg caacgctgtg        60
     ttgttctact tgtgtagacc ggtgtgttca tcccttccag atgctcagtc cgagtttcag       120
     ctccgtacag ccatcacgtg atttttgaga gcgccatcag tgaagttgtg tttttgttgt       180
     gtgttacgaa aatggaacag cggaatttag agcaacgtta tgccatcaag ttttgtgtta       240
     aacttgggga atccgcgagt gtgacttttg aaaagttgaa acaggcctat ggggaacatt       300
     ccttatcaag agcacaagtt tttcgctggc acaaatcatt tttggaaggc cgagaacacg       360
     ttgaagatga acctcgctca gggagacctt caacttcaaa aaccgacgag gcattcctct       420
     tgttccacag cccccctatt cacctgatct gagtccttgt gacttttttc ttttcccgaa       480
     attgaaaaat gtcttaaaag gacgtcattt tgggactctg gagaacattc aaaagaatgt       540
     gaccgacatg ttaaaggccc taccagttga agcctttcag cgctgctacc aagactggga       600
     actacgactc cgccggtgta tagctgccga agggaactac tttgaagggg acaatattgt       660
     tgtttgaaaa aaataaaaac tttggtagat aaaaaatcag tctcattact tttctcacac       720
     acctcg                                                                  726
//
ID   Mariner-N33_RPr repbase;    DNA;    INV; 454 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N33_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-454
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3315-3315 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~76% identical to the consensus. Both termini are not determined.
XX
SQ   Sequence 454 BP; 143 A; 96 C; 84 G; 131 T; 0 other;
     gggctagcta tcacatctga actctattca gcacaattgg atagggtcca tgctgttctg        60
     gccgaaaagt acccctcttt agtcaacaga aaaaaagttc tgcagcatgg taagaccaac       120
     acttgcgtca gactgcctca aaaattaatg agctggagtt tgaacttctt cctcaccctg       180
     cttatagccc agacctcgct ccttcggact accacttatt ccgatccatg gctcattttt       240
     tgaggtaaaa attttactac gggaaagaag gttgtattga attctttgcc tccaaagaac       300
     cttcgtggta ccaaagagga attgaattac tggcacaaaa agatgggttg aagtgattaa       360
     taacaatgga ttatactttg aagaataaac tggtatctta ttttttaata ctcattaaag       420
     taaaacagcc aaaaagcaga cttttgttac accc                                   454
//
ID   Mariner-N34_HSal repbase;    DNA;    INV; 776 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   28-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N34_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-776
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 988-988 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 776 BP; 253 A; 134 C; 137 G; 252 T; 0 other;
     cagggtgtcc cacgggaagg tgctgaaact aaacgattgg ttctcccctc catgacttca        60
     gaaagagtct tacagttaac ggtcgtccat ctgagggtcc gcagttttat tctggctgtg       120
     gtagaagcaa gtccgtgcgc gtcaaaatga ataatctgac gacggaagaa aagatctatc       180
     ttatcgagtg cttcttttcc agaggaaaag tatatagcag tgcttatagg gggtttcgta       240
     ctaaatacgg aacacataaa gttaagagcg aaaacacact gaaaaggtta gaattcatta       300
     tttatttaaa cttatgcgtt aggtcactcc attttttggc aataaatctg cattaaaata       360
     attttttgtg ttatttttaa cagaattatc gataatttta tgcagtatgg aactctccaa       420
     gaccgtagac atgatatgcc aggtcctgcc agatttagta gtagctatta aaaaggtcgt       480
     cagcaacatt aaagacatgt tagaaaaagt ttttacaagt tttcgtaaaa gaattgagtt       540
     ttgtacaaat tcagatggtg cacactttga aaatatttat cattagctta cttgattatt       600
     aacattattt tcatcaataa aataaactaa tgtacaaaca ttttgctaaa ttttatttat       660
     acccattaaa aactgcagac tttcctcttt ccaacgcaat ttttgttttt tcaataactg       720
     catacattta aaaatgacag ctgattagtt tcagcaactt cccatgggac accctg           776
//
ID   Mariner-N34_RPr repbase;    DNA;    INV; 1896 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N34_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1896
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3316-3316 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 1896 BP; 589 A; 357 C; 341 G; 608 T; 1 other;
     cagggtgttt cagggttaag tgtcctaact gaaaatatga atttaggacc tcaaaacaag        60
     aaaaaatttc ctctggaggt atgcccgtaa acgctttgtt tatgagatat tcacgtctaa       120
     agatttccat tttatgaatt attattaggt aggttataat aaaaaaaaat taatagtgtc       180
     ttccaactac tttattaata gaaaataatg acaattaaaa gtaaataaat aaataataaa       240
     gaaaatgagg aatcggtatc tttcttccac agcagcaata gccgaacggc actggattgc       300
     tgttattgat tcaattactc ttcttcttaa agaatgaaga tcattgaccg gcatttcata       360
     gacttttcct ttaatggcac cccaagcaaa aacaatccat tggtgtcaga tctggagagt       420
     aagcaggcta agccgccggt cctgaacggc caataaagat tttagaacga atgataaatt       480
     gattgtataa ctgctaaaat caccttgtgt ctctaactgc acataccaat attgacattt       540
     tacggaataa taccatctgg aatttgcact gtggactttc taaataataa ctctttctca       600
     agaacattta tcagtttgac gcttttacag agtttgcgtc attatgcatc gcatttattc       660
     taacagtgaa tatgccgata tggtgtttgt gtatggtttt tgcaatgctg cccgtcgtga       720
     atattccgtg cgatttccga ataaaagatt accttacaac actatcttta ggtccacatt       780
     tcaacgtctt agagtaactg gcacatttgc tttaatkcca cttgatgtgc tgatggagct       840
     cttggccctt aatgaaataa aaggagtgcg acaatataca atatatgatg ataatccgtc       900
     cgccagtgta cgaagagctg cagctgaatt acatattacg ccaactacag taaggagaac       960
     tctctctgca gatggacgtc acccatagca ttatcgacgg gtacgacatt tattacctca      1020
     agaattttgc caaagaaatt tttccgattg gtttaaatca agttgatctt aagccacaat      1080
     tttcgcgtca tattctctgg accgatgaag ctaatacact cacaagaaat gttcaaccaa      1140
     aaaattatca tctctggatg ctcgaaaatc ctcatgcaat tcgcgagcag cattttcagc      1200
     gtgagtttct gtgcaagttt agttagggat attagacaat attttaattg gtccgcattt      1260
     cttaccacct aggctcaatg cggacacatt tctgcagttt cttagtaatg attattacat      1320
     tttgattgaa gttgttccgc ctcaactcag aaggaactca tggtttcaat tagatggttg      1380
     tccagcacat tgcggcagag gtccacgaca gtggctaaat caacattatc ccaatcgatg      1440
     gattggccgt gcaggaccgg cggcttagcc tgcttgctct ccagatctga caccaatgga      1500
     ttgtttttgc ttggggtgcc attaaaggaa aagtctatga aatgccggtc aatgatcttc      1560
     attctttaag aagaagagta attgaatcaa taacagcaat ccagtgccgt tcggctattg      1620
     ctgctgtgga agaaagatac cgattcctca ttttctttat tatttattta tttactttta      1680
     attgtcatta ttttctatta ataaagtagt tggaagacac tattaatttt tttttattat      1740
     aacctaccta ataataattc ataaaatgga aatctttaga cgtgaatatc tcataaacaa      1800
     agcgttaacg ggcatacctc cagaggaaat ttttttcttg ttttgaggtc ctaaattcat      1860
     attttcagtt aggacactta accctgaaac accctg                                1896
//
ID   Mariner-N35_HSal repbase;    DNA;    INV; 556 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N35_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-556
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 989-989 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 556 BP; 210 A; 79 C; 90 G; 176 T; 1 other;
     cagggtgtac aaaaagtacc gggmcggcga aatatctcga aaactaagca ttttagaaaa        60
     aaatgtttca gacaaaagtt gtatggtttc aaggggataa ttttaactta tcgacctttg       120
     gaaatttcaa aatcatcaaa ttaacaaaag tcagggcgct attgtaacaa tatattcttg       180
     agatcaaata gagtaaaaaa agtctagtac cactttttct tccgacaaat agttagcgag       240
     atatcgtaag ttaaatattg aaaaagttat caagttttcc ttaaatatct caaaaaatat       300
     taggcaaata aaaaaatgtt tcagacaaaa gttgttcaaa ttaattggta gaaaaagatg       360
     atataataaa aaattggggt ttccatttaa gaaaagtaat gatcagtgaa tatctcgaaa       420
     gtggcatctg taaacaaaat gatatagttg ttttatgtcc cccttgaaac catacaactt       480
     ttgtctgaaa catttttttc taaaatgctt agttttcgag atattttcgc cgtcccggta       540
     ctttttatac accctg                                                       556
//
ID   Mariner-N35_RPr repbase;    DNA;    INV; 900 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N35_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-900
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3317-3317 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 900 BP; 232 A; 211 C; 197 G; 260 T; 0 other;
     cagtatgttc caaaagtccc attaccccct gcaaacatcc gtgcaaagtg ttcttttaac        60
     agcatgtata tgttgagaga agcttttaag tagcataaac aaattacaac aagtaaacca       120
     tcatttactc caggcgttga gtgtgcacac cgtcattttc atggcacaat attattcgcc       180
     tccaggagcg atgtgaaatg cgccgcagca ttgctggagt gatggaagca aatgcattcc       240
     gaacagcgtc tttgaggtct tcagttgtct gataacgatt ctgggcgact ttttgtttga       300
     tgtatcccca taatgcgtta tcacaggatg tcagatcagg acttcgtggt ggccatttca       360
     gaggtgccgg taacgctggc gatcctcttc ctatccatct gtctctgaac acttcgttta       420
     ggtattccct cacacgtatt gcgaaatgag ctagcgcccc atcttgttga aaccagattc       480
     gatcactaag ccccaaacgt tccaattgcg gtacaaacca gtcgcgtagc acggcgagat       540
     aagtgtgctg attcactgac acggtcacat gagtctcggg gtcttcggaa tggttgatgg       600
     tcttccagaa cgcggtctgt ccttaaagga accagtttca aatagcttct tctcccaacg       660
     taaaattgtt ggtttcggag gtgctgccct attaaatcta acgttaaaat cattttggat       720
     ctctctcaat gttttcccag tgtgaggtcg ttcatgagcc caggtactca tgacgattcg       780
     ttcctccagg gtataatttg attcgtcaga cattcttttc acgacccaat atcaccggaa       840
     cacaaaacat catatagcac acagttagat ggggggtaat gggacttttg gtacatactg       900
//
ID   Mariner-N36_HSal repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N36_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 990-990 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 868 BP; 300 A; 131 C; 135 G; 302 T; 0 other;
     cagggtgtcc cattttaaaa aacgcacctc gataattctt caacgaagca ttttcagcaa        60
     aaatgtttcg gacaaaagtt gtatgatttc aagggggaca taaaacaact atactatttt       120
     gtttacaaat ggcaccactt tcgagatatt cactgatcat tacttttctt aaatggaaac       180
     cccaattttt tattacaccg tctttttcta ccaattaatt taaacaactt ttgtctgaaa       240
     cattttttta tttgcctaat attttttgag atatttaagg aaaacttgat aactttttca       300
     atatttaact cacgatatct cgctaactat ttgtcggaag aaaaagtggt actagacttt       360
     tttgctctac ttggtctcaa gaatatattg ttacaatagc gccctgactt ttgttaattt       420
     gatgattttg aaatttccaa aagtcagtaa gttaacaaaa gtcagggcgc tattataaca       480
     atatattctt gagattaaat agagcagaaa agtctagtac cactttttct tccgacaaat       540
     agttagcgag atatcgtgag ttaaatattg aaaaagttat caagttttcc ttaaatatct       600
     caaaaaatat taggcaaata aaaaaatgtt tcagacaaaa gttgtttaaa ttaattggta       660
     gaaaaagacg gtgtaataaa aaattggggt ttccatttaa gaaaagtaat gatcagtgaa       720
     tatctcgaaa gtggtgccat ttgtaaacaa aatagtatag ttgttttatg tcccccttga       780
     aatcatacaa cttttgtccg aaacattttt gctgaaaatg cttcgttgaa gaattatcga       840
     ggtgcgtttt ttaaaatggg acaccctg                                          868
//
ID   Mariner-N36_RPr repbase;    DNA;    INV; 883 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N36_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-883
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3318-3318 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 883 BP; 240 A; 189 C; 224 G; 230 T; 0 other;
     cgaggtgcat tcaagttata acacctccga atttttttct cagaactgtt tccagataaa        60
     aacatgcggt ttgttttaaa ataagcgggc actctttgtt aatgcgtgac agagatggca       120
     gcactgtacg gcacacagaa ccctagcggc agcgtcgaga gtaaggactg ttttttatac       180
     taaaaatggc gacgttttca ttacacgatc agcgtgtaat cattcgattt ctccatttgc       240
     gtggtgtgac accaattgaa attcatcgcc agttgagtga gacatgtggt gatggtgcca       300
     tggatgtgtc aaatgtgcgt tcctgggtgc gacagtttaa agaaggaaga acgtcgtgtg       360
     aaaacaaacc aagacaatct cggcctcgca ccagtcggtc tgttgacacg atcgaccgag       420
     tggaaaaagt tgttttggag gatcgccgaa agagtgtgca acagatcgct tccgaagttg       480
     gcatttccgt gggatctgcg cacacaatcc ttcatgatga cctgaaaatg cgaaaagtgt       540
     cctccaggtg ggtgccacga atgaagactt tgaagtgatt gctcatgctc cctactcgcc       600
     tgatcttgct cctagcgact tttggctctt tccaacaatg aaagacactc tccgtggccg       660
     cacattcacc agccgggccg ctattgcatc agcgattttc cagtggtcaa aacagactcc       720
     taaagaagcg ttcgcagcgg ccatggaaac atggcggcga cgttgtgaaa aatgtgtgag       780
     gctacatgga gattacgtcg agaagtgaca aaagtttcaa atttttggtg tgattggtta       840
     gtgagaaaaa aattcggagg cgttataact tgaatgcacc tcg                         883
//
ID   Mariner-N37_HSal repbase;    DNA;    INV; 1155 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N37_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1155
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 991-991 (2014).
XX
DR   [2] (Consensus)
XX
CC   84% identical to consensus.
XX
SQ   Sequence 1155 BP; 370 A; 205 C; 231 G; 349 T; 0 other;
     cagggtgatt cagaacaact tgctgtcctt gaaatgacat gttcttgaac gaattctaag        60
     atgatttttc ctcttgcaaa atgttatccg aagcttagtt tttgagttat aaagataaat       120
     agtttgctta ttacgggtcg ggtacaggag gtaggcaggg acggcacaac tcaccgtcag       180
     acgcaggcgc ttacgttgag cgcctaatgc gatgagctta tcgatgcacg taataacatt       240
     gcacacatca tttttataac ttccgttaat gatcgtatcg agtgccgcga gggggtctgc       300
     gaagccgaca tgcgtttctc tccttcacaa acgcgtatga ttgcacagca aaatgcaata       360
     gttgacggca atgttgtccg gcatgaacgg attaatgtga tcgccaagca gcaaggatta       420
     atgcgatcgt aatagcgaat gaagtatttt aaattaatta ttatattaaa ttaattatat       480
     aaaattatat aaaattttat aaaattaaat taattataat taaattaaaa tgaagtgttt       540
     taacgtttga ggataaaata tttgattacg cgagcattcc caaactggaa aataagcttt       600
     gaaaatacaa acgagaaaaa cggaaaataa aaacgagaaa gagtgttaat cacggtttga       660
     aaagcataag atattcttac ttttaagaaa accgacgaat ttgtattcct ttgtaaagat       720
     tatttatctt gagaatgaca gcttttacca cttgttcgtt cccgtaatat taaagagttt       780
     tattttcaat tttacattcg gttcgatcgt gagttgtgga ctttccttcc tcctcgtggc       840
     gggcaaaatt aaagagaaca gaggttaaca ctccgtcggt cgcagtctaa cggaagttat       900
     aaaaatgatg tgtgcaatgt tattacgtgc atcgataagc tcatcgcatt aggcgctcaa       960
     cgtaagcgcc tgcgtctgat ggtgagttgt gccgtccctg cctatctcct gtacccgacc      1020
     cgtaataagc aaactactta tctttataac tcaaaaacta agcttcggat aacattttgc      1080
     aagaggaaaa atcgtcttag aattcgttca agaacatgtc atttcaagga cagcaagttg      1140
     ttctgaatca ccctg                                                       1155
//
ID   Mariner-N37_RPr repbase;    DNA;    INV; 537 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N37_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-537
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3319-3319 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to the consensus.
XX
SQ   Sequence 537 BP; 160 A; 108 C; 120 G; 149 T; 0 other;
     cacagtgcgt cccatggaaa aggtgactgc ttttgtattg acgatactac gcgcgccata        60
     tgtaagtggt caaactgtaa ctgcagatta ttacttgggg gtttgcaccg tttatgggcc       120
     aggattcggc gagttcgtcc ccgaatatcg ggagcaaggg tcatggacgc tactgcacga       180
     caatgcaccg gctcacaaga gtaagattgt acgtgatttc cttgccgaaa aaaacgatca       240
     cccccatatt cgcctgattt agcaccgtgc gacttctggc tatttccaaa gttgaaactg       300
     gcgatgaaag gaaggagttt cgactcaatt ttggatatcc agaaggcttc gacgaccatt       360
     ttggacagca taccaagaaa tgagtataca gagagcttta aaacattcta ccaaaggttg       420
     cagcgatgta ttgactcaga aggagtatat tttgaataaa aatgattata aattaaaaat       480
     aaatataatc ctgtttttta ttttatatca gtcacctttt ccatgggaca cactgtg          537
//
ID   Mariner-N38_HSal repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N38_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-415
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 992-992 (2014).
XX
DR   [2] (Consensus)
XX
CC   >79% identical to consensus.
XX
SQ   Sequence 415 BP; 129 A; 81 C; 86 G; 119 T; 0 other;
     ctctctaaag tacaatcagt gtattcttca ctgaaactct gtaactggtg gttcagttac        60
     aagtacagca ctgcaatcgg taaaatctcg ctgaaaggat cagttaatag tagcgactat       120
     tcccattatt gatgcagttt gcaaacacag tgtcatcgcg cgcaaggcgc atggaagccg       180
     ttaattccat cgccgcaaac gcagaaagtt ggatttgtac agcgtgtaac gaatttgtgt       240
     actacagatt ttgcagtgaa atcttacttc cactggtcaa aatcagtgag atataaggac       300
     ggagcagtaa agtgggagtt tccactgaaa atcagtgaat actcactgat tatcggtgaa       360
     atactccttt tactgattca atcagaaaca tttttactga ttcactttaa gagag            415
//
ID   Mariner-N38_RPr repbase;    DNA;    INV; 1567 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N38_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1567
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3320-3320 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1567 BP; 543 A; 240 C; 247 G; 536 T; 1 other;
     tacagggtgt atacggagga gtggtcgaaa cttcgggagg tgattcagca gctcaaatgc        60
     aacaaaaaat attctcttca ctttggcccg attctcaata gtgtccaaga tatttgcatt       120
     tttaactttt ccgtcgatat tcgcgttttt cgccataaaa acggccgtaa cttttctatc       180
     ctttatccta caacaaatct gcttattcca aacgaaagag cattaaattt cctataaatt       240
     tgcttggtac agagcctcaa aacgattctt ataacaatga aatttttact tgaatgtcta       300
     aaaatttcgt tctcgatgat ttttgttaaa attttcaact gcattttctc aatggttaat       360
     gaatcaagga atcacataat ttcagaaaaa gttgcgcatt tattgagctt caagatcata       420
     tggatttttt tggtttttaa taaaacccta ccccgaacag aggggtgtaa atgcagaaaa       480
     ctgggatttt gcgtaactga cttttcatta ctaatttact caaatgtcaa tttttaccat       540
     tttagtaacc attttagttt agaacaatta ttattttata aaacggaagt aaaaaataaa       600
     gtagcaataa aacacagaag tgaaaaagta caataggcag gtgcctagtt aaaattgcta       660
     caaaaatcgt tcgaactatt caaacaagga agtgggaaag aattgtggca aatttttagt       720
     ttcttgacta caattgtttg tgcaacatat tttaacgaca waatggaggt ttttttttca       780
     tcaaagttaa ttaataataa ttcaaaacta atcaattttt ggagaaggaa caaaaagaat       840
     ataaccattt tatttttgaa ttattattaa ttaactttga taaaaaaaac ctccattatg       900
     tcattaaaat aagttgcaca aacaattgta gtcaactact gcgttttatt gctactttat       960
     tttttacttc cgttttatta aataataatt gttaaaaact aaaatggtta cttttctttt      1020
     tgttccttct ccaaaaattg acatttgagt aaattagtag tgaaaagtcg gttacgcaaa      1080
     atcccagttt tctgcattta cacccctctg ttcggggtag ggttttatta aaaaccaaaa      1140
     aaatccatat gatcttgaag ctcaataaat gcgcaacttt ttctgaaatt atgtgactcc      1200
     ttgattcatt aatcattgaa aaaatgcagt tgaaaatttt aacaaaaatc atcgagaacg      1260
     aattttttag acattaaagt aaaaatttca ttgttataag aaacgttttg aggctctgta      1320
     ttgagcaaat ttataggaaa tttaatgctc tttcgtttgg aataagcaga tttgttgtag      1380
     gataaaggat agaaaagtta cggccgtttt tatggtgaaa aacgcgaata tcgacggaaa      1440
     agttaaaaat gcaaatatct tggacactat tgagaatcgg gccaaagtga agagaatatt      1500
     ttttgttgca tttgagctgc tgaatcacct cccgaagttt cgaccactcc tccgtataca      1560
     ccctgta                                                                1567
//
ID   Mariner-N39_HSal repbase;    DNA;    INV; 1275 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N39_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-415
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 993-993 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 1275 BP; 442 A; 246 C; 214 G; 372 T; 1 other;
     ctcacccgca aaaaaaaacg ggccactaaa ttttagcaca gttttctgca catctttcaa        60
     tagcgataac tcagccaaaa atcatcatat tgatatgaaa caaggctcaa attaaagctt       120
     ggacatttct tgtcaacaac caaaaaccta aaagtgaatt ataataaatg ttttacaaaa       180
     tggcggatgt tgaagataga cttcgattaa tggggaaaaa aatttgtttt ttaactgttg       240
     cactgctcag gggaatcggt tctctggtac aaaaatgtat gaggtttaaa gctcatttat       300
     ttcctaacaa atccatattt taatcatttt tctacgacct tttttgataa agttatgccg       360
     ttttgaagaa aatgttatga gtccggatat gaatcctatc gagcatttat gggcagcatg       420
     ctgaaacgaa gagtaagaaa acataatact caaacgttag cagcacttcg caacgctttg       480
     caagaagaat ggaacaatgt aaaacaagaa gaaatcagaa atttgattta cagtatgccc       540
     caacgaacag aagaattgtt aaatacgaga ggaggcaata cgcactatta aacttaaaca       600
     cacacacaca cacacataca catacacaca cggcacgcac acacacacac acacacacac       660
     cacacatggg atcagattcc tgccacktcc acgccgttga tcttggtaac gttaagagca       720
     ggacacacac atgcatgcat atgtacacgc acgcactcac acgagattta aatccgatca       780
     tctaccacca cgtggaacat cttgatcgag ttacatgtta atttcctttt tgaaaaagtt       840
     ttccacgata atttttattc tgaaccgcag gctttatgag aaaaggttgt ccattttgta       900
     acattttctt caaaacggca taactttatc aaaaaaggtc gtagaaaaat gattaaaata       960
     tggatttgtt aggaaataaa tgagctttaa acctcataca tttttgtacc agagaaccga      1020
     ttcccctgag cagtgcaaca gttaaaaaac aaattttttt tcccattaat cgaagtctat      1080
     cttcaacatc cgccattttg taaaacattt attataattc acttttaggt ttttggttgt      1140
     tgacaagaaa tgtccaagct ttaatttgag ccttgtttca tatcaatacg atgatttttg      1200
     gctgagttat cgctattgaa agatgtgcag aaaactgtgc taaaatttag tggcccgttt      1260
     ttttgcgggt gagtg                                                       1275
//
ID   Mariner-N39_RPr repbase;    DNA;    INV; 1728 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N39_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1728
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3321-3321 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1728 BP; 590 A; 269 C; 246 G; 622 T; 1 other;
     tacagggtgt tcagcataag actacggtaa cttcgggagg cgattctggg catcatttgc        60
     aacaaaaaat tccatataaa ctatggctcg attcggctcc gttttgtaga tatttttaat       120
     tttatgtttt ttcaaggtgt tactactttt tagcaaaaag ttgtctatat ttctcaaact       180
     attaaagcta cagctatttt aataagctca ttagaaagaa ggttaaattt ccttttaaat       240
     aagctaattt gtattccaaa ataataatat taagtatttt actttgtggc ccaaacataa       300
     gaaatagcaa gtttctaatt ttttccaaaa actttgactt catttttctc aaaaacattt       360
     tatatgaaaa aaccgtgcac tattcaggaa aaacatctac atacgatcac ctttcgaacg       420
     gtatacaata attggggtta tgttaaaaat tgatgcagaa atctgtgatt aattgcaaaa       480
     aagtaggcct caaaacagcg tcggcattat gaaaggaatt cacctaccat aagaatataa       540
     ctgatcagaa tcatcaaatc cagtacgatt ttttgcaaac gtgtaattta ataagcgttc       600
     ggaacaccct atcaggaaaa catctagaat attcccgcct agcttctcca ctattcccat       660
     ctacgaaacc gtagatgtat aacatatcgc gatattcaat attcgaatac gttggcataa       720
     tgatagcaaa atgacaacta aatatctaat gaaaatgtag actttaaact atcttttctt       780
     cttcttgtat ttatttgttt ttataagccg tattaggata aaacatgtca gtttttaact       840
     tggagattag agcgataagt aagttctcgg cttattcatt agctcttcac aacctgttaa       900
     ttccaaaagt ttattgagta gttcaaaatg atgatttatt cacattattt ggcatatttc       960
     tttaattaac taaagaataa cacacagatc taaactcgtt aaacgaaaat cctttctttc      1020
     gaaattggta cctaacactc atttaacatc atattcattt ttcttctttt tattttattt      1080
     tattatttat aatgtaaatt ttatattttt gaatatagtt cttaaattaa ttaattatta      1140
     aattacacgt ttgcaaaaaa tcgtactgga tttgatgatt ctgatcagtt atattcttat      1200
     ggtaggtgaa ttcctttcat aatgccgacg ctgttttgag gcctactttt ttgcaattaa      1260
     tmacagattt ctgcgtcaat ttttaacata accccaatta ttgtataccg ttcgaaaggt      1320
     gatcgtatgt agatgttttt cctgaatagt gcacggtttt ttcatataaa atgtttttga      1380
     gaaaaatgaa gtcaaagttt ttggaaaaaa ttagaaactt gctatttctt atgtttgggc      1440
     cacaaagtaa aatacttaat attattattt tggaatacaa attagcttat ttaaaaggaa      1500
     atttaacctt ctttctaatg agcttattaa aatagctgta gctttaatag tttgagaaat      1560
     atagacaact ttttgctaaa aagtagtaac accttgaaaa aacataaaat taaaaatatc      1620
     tataaaacgg agccgaatcg agccatagtt tatatggaat tttttgttgc aaatgatgcc      1680
     cagaatcgcc tcccgaagtt accgtagtct tatgctgaac accctgta                   1728
//
ID   Mariner-N3B_HSal repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3B_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 956-956 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 868 BP; 288 A; 146 C; 143 G; 289 T; 2 other;
     cagggtgttt cagaccaccc gggtcacccg attttttcgt taacgcgaca ttttagagaa        60
     aaatgtttca gacaaaagtt gtagggcttc aaaggatcta tttactgacg ctatgaattt       120
     gaccttggga taaccttgaa aagtccagtc aagatcaaca taaaaatctt aaatggaaac       180
     cccaattttt tattacaccg tctttttcca ccaattaatt tgaacaactt ttgtctgaaa       240
     cattttttta tttgcctaat attttttgag atatttaagg aaaacttgat aactttttca       300
     atatttaact tacgatatct cgctaactat ttgtcgggag aaaaagtggt actagacttt       360
     tctgctctat ttagtctcaa gaatatattg ttacaatagc gccctgactt ttgttaactt       420
     gctgattttt ggaaatttca aaatcatcaa attaacmaaa ttcagggcgc tattgtaaca       480
     atatattctt gagaccaaat agagcagaaa agtctagtac cactttttct tccgacaaat       540
     agttagcgag atatcgtaag ttaaatattg aaaaagttat caagttttcc ttaaatatct       600
     caaaaaatat taggcaaata aaaaaatgtt tcagacaaaa gttgttcaaa ttaattgctg       660
     gaaaaagacg gtgtaataaa aaattggggt wtccatttaa gatttttatg ttgatcttga       720
     ctgggctttt caaggtcatc ccaaggtcaa attcatagcg tcagtaaata gatcctttga       780
     agccctacaa cttttgtctg aaacattttt ctctaaaatg tcgcgttaac gaaaaaatcg       840
     ggtgacccgg gtggtctgaa acacccgg                                          868
//
ID   Mariner-N3B_LMi repbase;    DNA;    INV; 1128 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1128
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 79-79 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1128 BP; 333 A; 226 C; 266 G; 303 T; 0 other;
     ctccattcac cgaaacgaga gacgtactgt aaacacagca aggcgcgtga ccacagcgct        60
     gccgtcgagg ggtgtacaag gcaggggcgc acagtcagcg tggccgtctc aattgcaggt       120
     gtgagctcgt tagtgcgtgt tgtacagcgg cgatttcagg atctcttaag ttcatcttta       180
     aagacgcttg aaagactagt tgaaccttcg agaagtggtt ttaagatgtt cttcctcggc       240
     ttgcagttat tgttgttgat aaagcgccgt accattatcg tagaaaagaa aaagttccca       300
     gtgcgaattc caataagcac gaaatatcag agtggctaaa atctaaaaac ctcgattttg       360
     aagacggtat gttgaagaaa taacttttag atatatttca aaattacaga acagcgcaca       420
     acgaatacgc gatagatgaa atggcgaaga atgcagggaa aactgttctt agaattcctc       480
     cgtaccgctg tgaattaaac gccatcgagt aagtgtgggc cagaatcaaa ggctatgttg       540
     cagcgaaaga caaaacatac aaaatgccgg aagttaaaga actgcaagaa gaagcagtaa       600
     aaacagtgac tgcagaagtt tggaacaagt gcgtcctccg tgtcgtattt ttagttgaaa       660
     gtcaaatgtg gaaattgtag aggagagaga gaggagcggt ttggtataaa cctcaatgaa       720
     aacagttcaa gtttgacaga atgaaccttg tttcgccgtc ctttaccatt attattactg       780
     gtaatgttat taaaaattgt gtatgaatgg agcgttttgt tagcaacctg tatgaaaaca       840
     aatctgtttt gacagaatga actcagtttc atcgtacttt taacattatt gtaactggct       900
     ttgaatcttc catgtcgtgc tttatttcgt tacattgttg tccaggtttc tcagggtccg       960
     ctatgacgtc agctcggcag ccagccgacg ccaccagctg caaagcgtgc gccaaggatt      1020
     ttgtacaccc cttcgtatca cgtgaacacc gaatgctttc tctggaaacg atcgtagtcg      1080
     ctcacgtgac actgtttacg tttcgtccca gctctcggtg aacggact                   1128
//
ID   Mariner-N3_AAe repbase;    DNA;    INV; 956 BP.
XX
AC   .
XX
DT   24-DEC-2018 (Rel. 26.01, Created)
DT   24-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-956
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-956
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 157-157 (2021).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 956 BP; 324 A; 159 C; 154 G; 319 T; 0 other;
     ggggaaggcg gggcagtatg gtcatacggg gtaaaatggg ccacctttta tttgagctta        60
     aaacacagat tttgatctca ataaccttag gaccttataa agtatgcttc aattagtcac       120
     caccgtgaaa actaggcaaa aaactgattt ggaacttcat atatcgataa aaatctgaaa       180
     tgttgatgct actacgaaaa tcttataaga ttttggatgt aaaaataagc tttgcataaa       240
     gttttgttta ttgacttcaa tttttttcac agcagttcgt tcttccatta ttcataggca       300
     ttatgtgcac aaaattgtat agattctaaa ataaattttc aataaaatat aatttatatg       360
     aaacatctag gaacggggca atatggtcat agccggtcaa agctatctta tcacaaaaat       420
     agataaccaa aaatggcatg tcattttagc agtttaattg caatattgtt atcgcacgtg       480
     atttcaatta aaactagaat ttttaactgg ttaaacttat ttgaacgact atgtttgaaa       540
     actgaagctc ttagaaccat gatttattga actgtcagca aaacatacca tttcatgatt       600
     caaatcagac ttcaacccag tttttgtact aaactctatc atacattatt gtcttcttct       660
     aaattaagcc ttgcaaatgg ttttccaatt aaaataataa gatttagtat ggtggctcat       720
     attgccccgt aggggggacc atttcgcccc gtatagtgta gagtcacaca caaaatagtg       780
     tttttcaaaa atgttcccaa aaaaattcta agtaatcttt ttaccaaaat acaactgtgg       840
     tatgaaagga gatgcttcaa actacaaatt aagcttatgg atcgattaaa ttgtattgtt       900
     tttctatgct tttcaagaac ttttgcttag gtggaccata ctgcccctat tgaccc           956
//
ID   Mariner-N3_ACe repbase;    DNA;    INV; 1091 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1091
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 527-527 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~88% identical to the consensus.
XX
SQ   Sequence 1091 BP; 337 A; 199 C; 195 G; 360 T; 0 other;
     cactgctcaa aaaaattatg gcatagaaaa aattgtgggc aaaaattggc caactttgac        60
     taacgataac tttgcgaaaa attatcgtag gataacgttt tttttaaatt aaagcttgaa       120
     atctctattt aaactatggt cagattttaa gtttgatgca cccctgtaac tctcaaaaat       180
     atgaggatgt gtttgtcata ttgaaaattg caaagtttga cggaatgcac ggactttgta       240
     aaattttttt ggggaatgcc gtttgcagcg gcataaagtt cgaactttcc cctttaattt       300
     aaaaaaaaac gagtcgctgc gatttttttt cgcaaagtta cagcacttta aagttaccct       360
     tgcatttttg acatatatta ccgacattac ctgcattacc ggatatgcac cacgacgaga       420
     ttgctggatg gattttgcac atcgtgtttc tgcgtgtaaa tttcagtaac gcgtgttgcc       480
     tccgcgttgc tcgattactg cttgcagtcg attcctcata ttaatgcagg ccctaatttc       540
     ttcctgcgga atgtcattcc agatttgtac tagagcttgt gataagtctc tgagattgac       600
     agattgtctt gccaaatctc ttaatctatg atccataatc taatacaaaa tctagtccag       660
     caatctcgtc gtgatgcata tccggtaatg caggtaatgt cggtagtata tgtcaaaaat       720
     gcaagggtaa ctttaaagtg ctgtaacttt gcgaaaaaac gcagcgactc gttttttttt       780
     aattaaaggg gaaagttcga actttatgcc gctgcaaacg acattcccca aaaaaatttt       840
     acaaagtcca tgcattccgt caaactttgc aattttcaat atgacaaaca caccctcata       900
     ttttgagagt tacagtggca ggaatgcatc aaacttaaaa tctggccata ggtcttaaag       960
     tagagatttc aagttttaat ttaaaagaaa aatattatta tactacgata atttttcgca      1020
     aagttatcgt tagtcaaagt tggccaattt ttgcccacaa tttttctatg ccataatttt      1080
     tttgagcagt g                                                           1091
//
ID   Mariner-N3_AEc repbase;    DNA;    INV; 872 BP.
XX
AC   .
XX
DT   17-APR-2012 (Rel. 19.03, Created)
DT   17-APR-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-872
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 583-583 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~87% identical to consensus.
XX
SQ   Sequence 872 BP; 263 A; 177 C; 169 G; 263 T; 0 other;
     cagggtgtcc cattttaatc gatcacctca aatatctctt gaacagtgca ttttaaggaa        60
     aaatgtttca gacaaaagtt ttgggacttc gagggggaca taagatggtg ccattggttt       120
     gaccttgggt ggcgtcgtca aggtcagggc aaggtcactt tgaatttttt aaacggaacc       180
     ccccattttt cattacgtat tcttgtagct tacctcgaga gctttccaaa acactataat       240
     taagttcatt ttcattaagt acttttcgag ttataaggct tgcaagttac agcaccgccg       300
     gcattagcat tacccaaggt gtccgatcga cggctaaaat ctcttgaatg ttgttcagga       360
     tcatgacctg gataacattt gtcaagatca aggtcattgc agattgttcc tcttattttc       420
     atttttgcac taaaaattca tttctacgta aaaatgaaaa taagaggtac aacctccaat       480
     gactttgaac ttgacaaatg ttattcagaa catgatcctg aacaacattc aagaggtttt       540
     aaccgtcggt cgggcacctt gcgtaatgct aatgcctgcg gtgctgtaac ttgcaagcct       600
     tataactcga aaagtactta atgaaaatga acttaattat agtgttttgg aaagctctcg       660
     aggtaagcta caagaatacg taatgaaaaa tggggggttc cgtttaaaaa attcaaagtg       720
     accttgccct gaccttgacg ccacccaaga tcaaaccaat ggcaccatct tatgtccccc       780
     tcaaagtccc aaaacttttg tctgaaacat ttttccttaa aatgcactgt tcaagagata       840
     tttgaggtga tcgattaaaa tgggacaccc tg                                     872
//
ID   Mariner-N3_BTa repbase;    DNA;    INV; 1201 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1201
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 648-648 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1201 BP; 369 A; 233 C; 230 G; 369 T; 0 other;
     cagggtgtcc caaaagtccc ttccaccccc tctaaaattt tacctaatta atattttgaa        60
     acgaaacttt ggggatgttc atcgatcaat gtaagctact tttggggccc cccaaaattt       120
     tcggggcccc ccgtggggag gggctgcgga ccccaacttt tttttttcaa atggcaaccc       180
     ctatcttgtg atacctcatt cgaaagagca taaaaaacta agaattttgg cgcaaaccgc       240
     agatcaatat cttaattttt gaccgagtta tgataggtca aaggtcaaat ttgacctatt       300
     ttcaaaaaat cataactccg gttcaaatta tcgtaatgaa aaaaataaaa cgggaaaatt       360
     taccacattg taagcacttt taaggaaaaa tcacagaaat tacttcaaac taattttaag       420
     gggggtttcg gacccccaaa tacgccaatt caagggtcat tcaattttcc cgcgaaataa       480
     gccaatttcc cccagatttg cctccacatt agttcagtaa ggtcaaaatc agttcaacat       540
     tacgttggca agtccccaaa tttcgggaaa agttaaaaaa aaaaatttaa acggtcaaat       600
     ttaatcacct ttaatttcgt tttttttaac ttttcccgaa atttggggac ttgccaacgt       660
     aatgttgaac tgattttgac cttactgaac taatgtggag gcaaatctgg gggaaattgg       720
     cttatttcgc gggaaaattg aatgaccctt gaattggcgt atttgggggt ccgaaacccc       780
     ccttaaaatt agtttgaagt aatttctgtg atttttcctt aaaagtgctt acaatgtggt       840
     aaattttccc gttttatttt tttcattacg ataatttgaa ccggagttat gattttttga       900
     aaataggtca aatttgacct ttgacctatc ataactcggt caaaaattaa gatattgatc       960
     tgcggtttgc gccaaaattc ttagtttttt atgctctttc gaatgaggta tcacaagata      1020
     ggggttgcca tttgaaaaaa aaaagttggg gtccgcagcc cctccccacg gggggccccg      1080
     aaaattttgg ggggccccaa aagtagctta cattgatcga tgaacatccc caaagtttcg      1140
     tttcaaaata ttaattaggt aaaattttag agggggtgga agggactttt gggacaccct      1200
     g                                                                      1201
//
ID   Mariner-N3_CFl repbase;    DNA;    INV; 547 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Camponotus floridanus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-547
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Camponotus floridanus genome.";
RL   Repbase Reports 14(4), 822-822 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 547 BP; 190 A; 101 C; 86 G; 170 T; 0 other;
     cagggggtag acaaaataat gtgaacacct gaaaaataaa tactatattt gtttattaat        60
     aagatattgg gccaccattt gcctttaata tagcttcaat tctccttgga atagaatcat       120
     acaatttttg aatagtctcc agtggaatat tgtcccattc ttctatcaaa taatgccatt       180
     tttcaagatg gtaacgcacc catacacaca gctagaaaag ttcaatcttg atttgaacag       240
     catcaaaatg aacttcaaca tcttctctga ccagcacaat tacccgattt aaatatcatc       300
     gaaccactat gggcagtttt ggaaaagaga gtgagaagca gatttcctcc tccaacatct       360
     ctaaagcaat tgacagatat tttgataaaa gaatgggaca atattccact ggagactatt       420
     caaaaattgt atgttctatt ccaaggagaa ttgaagctgt attaaaggca aatggtggcc       480
     caacatctta ttaataaaca aatatagtgt atttttcagg tgttcacatt attttgtcta       540
     tcccctg                                                                 547
//
ID   Mariner-N3_DSuz repbase;    DNA;    INV; 1084 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1084
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 145-145 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1084 BP; 378 A; 210 C; 194 G; 302 T; 0 other;
     cacctatccc tcgctttgcg tcggggatgc gttccaaaaa aatacgacgc aaattgaaac        60
     gacgcaaatg tgaattagga ttttctatag caaaccatgt aaagttcgaa gatgggttcc       120
     agggttacaa aaatactact ttttaaaaag aaaattgagc aaagtgatca ttaaaaaaaa       180
     aacaaaaaaa acatttcatt ttgttacata ttatacatat aaaaacaaaa agaaactaaa       240
     ttatttaaaa caaaataaat tcttcaatta catactcaat tatgaaaaat aaattagaat       300
     taatcactct ctgacgagtc ttttacctct gatgtcgtag gccggctttc tttaaaaaaa       360
     aaattggtcc aatgtttgct gaacattttt tttgtaaagc ctagtactca catcgacgaa       420
     aaccgcgaac taaccatggg agtgagcgag aagcaaatac gcggctaacc cttttcgtcg       480
     ggtctgtttt ccagcgcggt actcagatta ttggccagcc tattgggact cggagctgga       540
     ctacagatgg cgcgggaaag atggcgaagc atccgtggga cgagaaggaa gccttaaact       600
     tataatttac ataaataaaa acattcgttg aacatttcat ttatttttat tttaatttct       660
     ttgtgcacca gcagactctt cttttttaaa ttgctccaat tgatttgttt tccgtttggc       720
     aataagccca gctgcttgac agtaagacca tgccacatgc attgcggatg aactttgaaa       780
     acttcggtca cactacaaag aataagattt ttcgactagt gaaactcttt gccgatctga       840
     gtactaggct taagtgtgaa atacatttcc ttgtagctaa tgatattcgt agctaccgca       900
     tgggacactt taagactcct ttcgctgtcg ggatcgacac ccttaaaaaa catattaacg       960
     acttcatccc aaaacaacgc aacatcaaaa atctaacgcg cacattgaaa attagttcta      1020
     attaagaagc gacgcaactt cgaaaaaaac gcaaaacgaa aagacgcaaa gcgagggata      1080
     ggtg                                                                   1084
//
ID   Mariner-N3_DTa repbase;    DNA;    INV; 1413 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   26-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1413
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6252-6252 (2021).
XX
DR   [1] (Consensus)
XX
CC   97% identical to the consensus.
XX
SQ   Sequence 1413 BP; 483 A; 226 C; 222 G; 482 T; 0 other;
     aggtgtgttt caaaattata cgacaccaac acacttattt tttgaaaatt tgtagcgttg        60
     ttgttgttta tagaaagcga aacatttaaa tgcagatcga aagaacaatg tatgatgtgt       120
     acgaaaaaaa ataccacgcg tccttgatcc tctttttaag gatttaccgc taatttttcg       180
     aaatatagtc tatttttcgg ctatgtgcga tcgtttcata attatacgac accatcgatt       240
     ttttccggtt ccaatgatca aacttgaccg aaattttttt tctggttaaa tataaactaa       300
     aaggttccat tttgagagta atccagccca aaggtccttt caatcttcaa ccaatacata       360
     aatattgaat atgtctctct acaccttaaa aaagtagttt ttcgaagtca tatcccacaa       420
     ttcgtcttaa cttttgtctg gtcaatattc ttagcacttt tgaatcaaat aaaaatccct       480
     ttcagttcat tacatgcacg aaacagacct aaaaaatcat tttttaaaga actgcccttt       540
     tggaacaaaa cctgttttat tccaaaaata tttgattttg gccgtcactt tctgtcaaaa       600
     tgcaaaaatt tgttcttcaa aaccttaata aactttccac atttcacgat tggaacattt       660
     gaaatgcgat ccccagtctg cgccactttg aagttttttc gaaatttttt catacgaatt       720
     tgagtgtttt ctccatggga tttcattaag ggggcgcaga ctggggatcg catttcaaat       780
     gttccaatcg tgaaatgtgg aaagtttatt aaggttttga agaacaaatt tttgcatttt       840
     gacaggaagt atcgcccaaa atcaaatatt tttggaataa aacagtttgg ttccaaaagg       900
     gcaattcttt aaaaaatgat ttttgaggtc tgtttcgtgc acgtaataca ctgaacagga       960
     ttcttatttg attcaaaagt gttaagaata ttgaccagac aaaagttaag acgaattggg      1020
     ggatatgact tcgaaaaaaa acttttttta aggtatagag agaaatattc aatatttatg      1080
     tatgggccga agattagaag gatcaaagat ccagcccaaa gctggattac tctcaaaatc      1140
     gaatctttta gtttatattt aaccagaaaa aaaatttcgg gtaagtttga tcattggaac      1200
     cggaaaaaat caatggtgtc gtataattat gaaacacctt aaaattaaga ttttgttata      1260
     agttatgcca cggaggcaaa tattatattg ttttcacatg aaattctttg ttttgttata      1320
     acgattaaat acaaacacaa tcaccttaat acgactttta ataaaaaaaa tatttaagaa      1380
     atttatggtg tcgtataatt ttgaaacaca cct                                   1413
//
ID   Mariner-N3_HSal repbase;    DNA;    INV; 870 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-870
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 957-957 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 870 BP; 298 A; 141 C; 136 G; 295 T; 0 other;
     cagggtgtct taaaaatacc ggaacccccg gataactttg caggatcaag ttttcatgaa        60
     aaactttaaa tacaaaagtt gtagaaaatc gagtaacgga cttgatggtg accttgaatt       120
     tgaccttggc catgaccttc aaggtcattt ggaggtcaac ttgcgttttt taaatgggaa       180
     cccttatttt ttattacact gtttttttct accaattaat ttgaacaact tttgtctaaa       240
     acattttttt atttgcctaa tattttttga gatatttgag gaaaacttga taactttttc       300
     aatatttaac ttacgatatc tcgctaacta tttgtcggaa gaaaaagtgg tactagactt       360
     tcttgcttta tttagtctca agaatatatt gttacaatag cgccctgact tttgttaact       420
     tactgacttt tggaaatttc aaaatcatca aattaacaaa aatcagggca ctattgtaac       480
     aatatattct tgagactaaa taaagcaaga aagtctagta ccactttttc ttccgacaaa       540
     tagttagcga gatatcgtaa gttaaatatt gaaaaagtta tcaagttttc ctcaaatatc       600
     tcaaaaaata ttaggcaaat aaaaaaatgt tttagacaaa agttgttcaa attaattggt       660
     agaaaaaaac agtgtaataa aaaataaggg ttcccattta aaaaacgcaa gttgacctcc       720
     aaatgacctt gaaggtcatg gccaaggtca aattcaaggt caccatcaag tccgttactc       780
     gattttctac aacttttgta tttaaagttt ttcatgaaaa cttgatcctg caaagttatc       840
     cgggggttcc ggtattttta agacaccctg                                        870
//
ID   Mariner-N3_LMi repbase;    DNA;    INV; 1347 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 20.01, Created)
DT   01-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1347
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 80-80 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1347 BP; 417 A; 272 C; 309 G; 349 T; 0 other;
     ctatactcca ttcaccgaaa cgagagacgt actgtaaaca cggcaaggcg cgtgaccaca        60
     gcgctgccgt cgaggggtgt acaaggcagg ggcgcgcagt cagcgtggcc gtctccgttg       120
     caggtgtgag ctcgttagtg cgcgttgtac agcgggatct cttaagttca tacccgaagt       180
     aacgtctggg aagatgacac cataaagtcc tcaaaacaag cgtttctgtc cggattatcc       240
     accggaagca agggcccatc aggtaaaggg aaacgtctga ttatcgcaca cattggcagc       300
     aaaacagcgt ttgttgaagg atgtttgtgg actttcgaat ccaagaaaag tggaggttat       360
     catgaggaga tgtgcgccga aaccttcgag aagtggtttc aagatgttct tcctcggctt       420
     caggaaaacg cagttattgt tcttgataac gcgccgtacc attatcgtag aaaagaaaat       480
     gttctcaatg ctaattccaa taagcacgaa atatgagaat ggctaaaatc taaaaatatc       540
     tattttgaac acagtatgtt gaagaaagaa cttttagata tagttaaaaa tcacagaaca       600
     gcacacaaag aatacacgat agatgaaatg gcgaagaatg cagggaaaac tgttcttaga       660
     attcccccat accactgtga attaaacgcc atcgagttag tgtgggccag aatcaaaggc       720
     tatgttgcag cgaaaaacaa aacatacaaa atgccggaag ttaaagaact gctagaagaa       780
     gcagtaagaa cagatactgc agaagattgg aacaagtgcg tcctccatgt ggtagaaaaa       840
     gttgaaattc aaatgtcgaa attagactgc attatagagg agagagagga gcggtttgtt       900
     ataaacctca atgaaaacag ttcaagttcg acagagtgaa ccttgtttcg ttgtccatta       960
     acattattat tactgatatt gttattaaaa attgattttg tttgaatgga gcgttttgtt      1020
     agcaacctga atgaaaataa atctacttca acagaaagaa ctcagtttca tcgtactttt      1080
     aacattattg taactggctt tgaatcttca atgccgtctg tgtttttttt tacgctttat      1140
     ttcgttacat tgttgcccag gtttctcacg gtccgctgtg acgtcagctc agcagccagc      1200
     caacgccgcc agctgcaaag cgtgcgccaa ggattttgca cacccctacg tatcacgtga      1260
     acaccgaatg ctttcgctgg aaacgagcgt agtcgctcac gtgacactgt ttatgtttcg      1320
     tcccagctct cggtgaatag actatag                                          1347
//
ID   Mariner-N3_PBa repbase;    DNA;    INV; 987 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Pogonomyrmex barbatus
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_PBa.
XX
NM   Mariner-N3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-987
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 629-629 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. Termini are not determined.
XX
SQ   Sequence 987 BP; 378 A; 109 C; 127 G; 373 T; 0 other;
     aaatatttaa aatttaaata tttttattat tatttattcc ttgtttaaaa atgtacacgt        60
     aaaaccgtaa agtacaacat gataaaataa aagtgaaagt aatcgtaaaa tacaactaag       120
     tatgatctag ttattttatt ttcaatttca aataaaaaat attgcgttaa attttattat       180
     gtttttttcc attgcgtata caactataca tatatccata cataaattat atctccgtta       240
     tatatcgctt ttcagatcta attatataaa tttataattt attatatatg ttacattaga       300
     aattatatat tatatagata tatacttaca attacgtaga ataaatgagt atgaggaaga       360
     aagataaagg aatagatcat ttattaatgt tgaagtatta atttttcaaa attcttcttt       420
     ttgtagataa taaaattatg tgtaattatg ctgagtgtgt tccttcatca aataatttgg       480
     tggttctgaa aaaaccattt gatagttctg aaaagaactg tttaaataat actgggactc       540
     agtacttagt ccagtgaagt gagtacttag tctgaaaagc gatatataac ggagatataa       600
     tttatgtatg gatatatgta taattgtata cgcaatggaa agaacataat aaaattcaac       660
     gcaatatttt ttatttgaaa ttgaaaataa aataagatca tatttagttg tattttacga       720
     ttacttttac ttttatttta ccatgttgta ctttacgggt tttacgtgta catttttaaa       780
     caaggaataa ataacaataa aaatatttaa attttaaata tttaaatttt actgaaaaga       840
     aaaagaatag aacccttaaa aaagattacc tattattttt ataattgctg atattctaat       900
     aaaattcgcg cgcacgcggt tatcgactca atgtcggtaa tgttacgcgc tactgtgatc       960
     ccgcgaatca ttgcaccgca ttgtaca                                           987
//
ID   Mariner-N3_PPo repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-567
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2750-2750 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TA TSD. ~30bp TIR.
XX
SQ   Sequence 567 BP; 171 A; 99 C; 121 G; 176 T; 0 other;
     ttgggttgtt cggaaagtaa tttcgttttt tcccgtcaga ggacttaatt acgttttttc        60
     gaaaccaact tcacacttaa gccgcataac cattatatgt cttgagagct gatattgcaa       120
     ggcttgtgtg tgaaaaagtt ctattaattc tacacagtag tttttggttg gtgccctttt       180
     aaatatggag agcaataagc agcattttcg tcatatttta cttttttact tcagaaaagg       240
     taaaaatgct gtccaagcga gaaaaaaatt gacggatgtg tatggagaag gcgtgttaac       300
     agtacaccag tgccagaact ggtttgcaaa atttcgatcc ggcaattttg atgtcgaaga       360
     tgcaccacgg tctggaaggc cggtcgaagc tgacaaagat gcgttaaagc attagttgat       420
     gcaaatcggc gaataaccac acgagagatc ggtgagagat taaatttgtc gaattcgact       480
     gtttatggcc atgtctttat gttatgttca taaactgtct ttcatgttcc ccaaaaaaaa       540
     cgaaatgact ttccgaacaa cctatta                                           567
//
ID   Mariner-N3_RPr repbase;    DNA;    INV; 1293 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1293
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3283-3283 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 1293 BP; 401 A; 260 C; 261 G; 371 T; 0 other;
     ttgggttgtc cggaaaataa tgcaggattt tatgttttct ttaaaatacc cctccaaata        60
     gtaaactgtt tatgtttgtt ggacttttga cttttataaa tgtaaacact tattaatcct       120
     ctttcaaaca aaaatgtttg tttacctctg taacattttg ctacttggaa ataattcagt       180
     ctttactaag atgtcaaagc gtgattttcg cataattttg ttttacgagt tcaaactcgg       240
     ccggaacggg gcccaaacgg ccagaaatat caacgatgtc tggggcgaag gcagtataag       300
     tgagtgcact gttcaacggt ggttccagag atttcgagag ggagacttga gccttgaaga       360
     caaagaaggc cgtggaagaa gttctgccct tgatgacgat gttctccgag ctttggtgga       420
     agaaaatccc agaacaactg ttcgagaact ggcagggaaa ctcgaagtca gcaaatcaac       480
     cgtcgatgac catctcaagg cgattgggaa ggtgaaaaag cttgaaagtt gggttcctca       540
     cacattaaac gaccgccaaa aaagatcagc ggtatgaaat ttgtgctgca cttctttgcc       600
     gaaacaacag cgatcctttt ctgtccagaa ttgtgacttg cgatgaaaag tggatcctct       660
     acgacaacag cagacgctct ggacagtggc ttgacaaagg agaagcagca cgacattttc       720
     caaagccccc aaatcatcaa aaaaaaaagg tgatggttac tgtttggtgg gcttcatttg       780
     gtctgattca ttacagcttc ttgaatcctg gcgaaaccat caatgccgaa tcgtattgta       840
     accaaattga cgtaatgcat cagaaattgg caataatgaa gccatcttta gtcaatcgaa       900
     aggggcccat tctgttgcat gacaacgctc ggccacatat ctcacgtttg acttcccgaa       960
     aattgttgga gcttggctat gagactctgc cacacccgcc ctactcaccg gacctctcgc      1020
     ctactgatta ccattttttt tagacacctg gaccgctatt tacaaaataa aaaatttatt      1080
     gaccaaagaa cattagaaaa tgcgttttct gaatttataa attctaagga ttccaaattc      1140
     tatacagagg gtatggaaaa gttacccaca cgttggcaga aatgtataga aagtaatgga      1200
     gactattttg attaataaaa acagttataa atcattaatt tttttttttt tcttttaaaa      1260
     ccataatcct gcattatttt ccggacaacc caa                                   1293
//
ID   Mariner-N40_HSal repbase;    DNA;    INV; 397 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N40_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-397
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 994-994 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to consensus. The 3'-end is not determined.
XX
SQ   Sequence 397 BP; 138 A; 66 C; 66 G; 127 T; 0 other;
     cagggtgttc agcgtaacgg tccgcacgat ttttgagacg cttccgacgg ttgcaaggtg        60
     aacattcatc tgtttcatgc aagctaccac ttgcaataaa aaaattgaaa aaaaattttt       120
     tcataaaaaa tcaatgtcac cttgaatttt ttaaatggca ccatgcaatt ttttataata       180
     ttggagactt taagacgaat tcaacgcact atcagaaatg tcacttttat tgatatttaa       240
     tatcaaattt gcagcattat tttaaatagc agtacttata agctctgact agaaatgtaa       300
     acataaacac tgaaagttgt ctgggaacta ttttcgcatt gtaaacacat aatattcatc       360
     atgagtgagg ggatttaaga cgaattcaac gcgctat                                397
//
ID   Mariner-N41_HSal repbase;    DNA;    INV; 2388 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N41_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2388
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 995-995 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. The 3'-end is not determined.
XX
SQ   Sequence 2388 BP; 640 A; 508 C; 522 G; 705 T; 13 other;
     cactgcgcaa caaaattagc gcaacaaaaa tttataccaa aatttcactc aacttgaaat        60
     aatcgtaact ttgcgaaaac ttatcgtatt tggaaaawtt ttttttaatt ttaaagggta       120
     aagcctctat tttaaggaac tttcattaga ttttgattct gtcctcctcc cctcccgcca       180
     tctcttcaaa agtaaggacg tgttttgttt ccaaaaattt gcatagtttg acgcgcttga       240
     cggggtgcaa tgattttttc tcgcaaactt tatcagattt atcataaaat atgaactgtt       300
     ccctacaaat taaaaaaaaa ttaaagtctc tacgattttt tttttggcaa agttacgacg       360
     tatcaaagtt acctatgcat ttattcctgt taccgccagc attagcatca cccaatgcac       420
     accacgagga ggttgctggt mggattttgt gcatcgtgtg tgtgtgtgcg tgtgtgtgcg       480
     tgatgtgcgc gcgcgcgcat gtgtgtgtgt gtgtaggtgg gtgacgtgtt tgacggaaaa       540
     aatgaaacaa tattgcacga agaaatggag gtttgcactt aatagtgwgt attacgtcct       600
     cgacttctaa ttacttcctg aagacgctcg tgcgtattga tgcaggatct gattgcatca       660
     tgaggaattt cgtgccatat gcgttgtaat gctatctcca gttgttgaag agtagttggc       720
     ggtctctcta aattttgcag ccttcttccc atcatatccc acacatgttc gatgggattt       780
     aaatccggac tcattgctgg atgtgatagc acctcgaggt tgttttcttc cagaaagtca       840
     tgtataattc tggcagtgtg tgggcgatgt gtgggcatgc attaagatga aattgcgccc       900
     catttcatga cgcatcggaa tgacatgagg acgcaaaatt tccttcacct agcgttccgc       960
     tgtcattcca ggaggtggta tggtgacaag atttgtgcgt ccatgcatcg atattccacc      1020
     cgataccatg atggagctac caccaaacgc tcgaacaggc tgaatgcaat tctgttcaaa      1080
     acggtgtcca ttacgacgcc aaacacgaat ccttctatcg caattgaata cacaaaatcg      1140
     tgattcatca gtgaataaca cgttattcca ttgtctcgca gtccaattca aatgattgcg      1200
     tgcatattgt aaacgagcac gtctatgagc cacagttaac attggcactc gagcacgagc      1260
     ccgtgatctc aggtttgcat cgtgcaaacg cctcctgact gtttgcacac taattcgcct      1320
     atgcgggaga acttcaattg caatttgtcg cgctgatctt gacggatttc ggatcgtttc      1380
     attgacgagg aggcgatctt ctctagctga tgttactcgt cttcgacctt gtcctctcct      1440
     ccgacgaaaa ttgccagact cgtgttcagt tgkaatgttt tttgacacat tkatcttgtc      1500
     ttgttgtaga tgatawcagc tcaaaaccac atatcacaac gtttctttga gctaatactg      1560
     tttacatttt caagacaagc actacaactc tgtgtaaact tattccagtt tcattcwgaa      1620
     aacagtagaa kaaagtcatg acagtgcctt ttctgaatga aaatcaagtt gcgcaagtca      1680
     ttgcwctttt ggaagaagga ttgagccaaa gtcatattgc aagagaaaat aggtgttaat      1740
     cggtcctcct tttctcgagt ttgggctcgt catcaagaga cgaattagtg tgcaaacagt      1800
     caggaggcgt ttgcacgatg caaacctgag atcacgggct cgtgctcgag tgccaatgtt      1860
     aactgtggct catagacgtg ctcgtttaca akatgcacgc aatcatttga attggactgc      1920
     gagacaatgg aataacgtgt tattcactga tgaatcacga ttttgwgtat tcaattgcga      1980
     tagaaggatt cgtgtttggc gtcgtaatgg acaccgtttt gaacagaatt gcattcagcc      2040
     tgttcgagcg tttggtggta gctccatcat ggtatcgggt ggaatatcga tgcatggacg      2100
     cacaaatctt gtcaccatac cacctcctgg aatgacagcg gaacgctagg tgaaggaaat      2160
     tttgcgtcct catgtcattc cgatgcgtcg tgaaatgggg cgcaatttca tcttaatgca      2220
     tgcccacaca ctgcccacac actgccagaa ttgtacwtga ctttctggag gaaaacaacc      2280
     tcgaggtgct atcacaccca gcaataagtc cggatttaag tmccatcgaa catgtgtggg      2340
     atatgatggg aagaaggctg caaaacttag agagaccgcc aactactc                   2388
//
ID   Mariner-N41_RPr repbase;    DNA;    INV; 1263 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N41_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1263
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3322-3322 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
SQ   Sequence 1263 BP; 416 A; 195 C; 226 G; 421 T; 5 other;
     taggggagac tgttgtacct tgagcatagt gtaccttgga acaattcatg tttctggaca        60
     ctggtgtcat ctgtggactt tctgttgaag tatgtgatag atcataatat aacagcccta       120
     taaactgagt ttcagttttc ttgtttgctt ttggcggttt ccagagcaat ttttagtttt       180
     tcttagtgaa aagtaaaatt ttataacatc aaaccgaagt gtttattctc aaaaatagtg       240
     aatataacta tcaaccacgt caggaataat aatctccgct aaatagtgag tagaatactt       300
     acattatttt gatttctatt cstaacctat aatttagatt gcaacttttg ttcaaacacg       360
     taccgtcttg taccttgaaa caaacmtgca tcctgtacgt tggaacacta ctcttttgcw       420
     aaaggctatt tattttattc tatttgttta taggtaaaga tgccacgcag taaaawaggc       480
     aggaaaaggc cccctgttaa ttctaatgcc attgaagaag ccgtggccgc tgttacaact       540
     aattctgaaa acaagatttc attgagagaa gcatgcaaaa tttataaagt gtctctcgcc       600
     actttatcaa gacatttaaa agtttttaaa gaatctgggg ctgaaaattt taagtattct       660
     gcwaattata ctgtaaaacg tgttttcgat gacacggaag agttaagtct ggttgactat       720
     ataaagacaa tagccaaaat gcagtatggg ctctcaaaga aaggtgtgag ggagttggct       780
     tacaaatatg ctgtagcgaa aaaaaaaaaa atccaacaac atggggcgat gaaaaaattg       840
     ctggtgaaga atggatgcgt ggattcatga agcgacatga caaagaatcc acactcaatt       900
     atttgaaaat gtccatcaga ttctttgttt ttatagtgca gaaatagtat tttgtatatt       960
     gtgttgaata catgttttct ttctctaatt gtgtgtattt taattttaat attttatgtt      1020
     ccaaggtaca tgaccttgtg ttccatggta catgaccatg ttgtaccatg gaacagaaaa      1080
     catcacttga cagatccatc atttttacag ttaatattta tattttttaa acatttaata      1140
     ttggaaattg tagcttaaaa aacactcttc gtagaggcat agttaaatgt tcgaaatgtt      1200
     aatttgtatt ttatacagac gaaaaaacaa aaaaagtgtt ccaaggtaca acagtctccc      1260
     cta                                                                    1263
//
ID   Mariner-N42_HSal repbase;    DNA;    INV; 947 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N42_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-947
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 996-996 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 947 BP; 284 A; 194 C; 194 G; 275 T; 0 other;
     cagggtgtct caaaacgcac gattatcctt tgggggtgtg aaagagagtg aaattctgag        60
     tcgaaagttc ctcttccatt ttttcctccg accattaata acaaagttat taacgaggaa       120
     agtcgaccaa tggcgtggcg cgcacgactg tcgcgcagtg ccgtacactg gcgcgggact       180
     ccgccctacg ctggcgccga aatttgtttt tatctgatga tatcaaatag ctcatttatc       240
     atccatttga tgagcttaaa aagtcggaaa atacctcact tcttcctttg tcttcacagt       300
     tcgttgttta tgttttgaat ctcgttgcgt ttaggattga ggaaccgcta ctaaagagta       360
     tctcgtgcaa gaaataacaa ctctgtcagc cgtttctcaa tccgcgagac atcgaagatg       420
     aaaacgtaaa catgggaaaa gcaaaacaaa aggtaaaacg agaatttatt gtgatgaatt       480
     aacacgttat aaaagagtac acggaacaca cattacgtag tttctgcgaa caacgttttg       540
     aacaggcgct ctaagaaatc ggtctttttc aagaccactg aaaaaccatt ggtcttttca       600
     tttaaaataa catttaataa aatttctatt tttaaacttg ttttcaatcg attttttgtt       660
     tttgttgatt aaaaatgatg ataaatcaac tagctcatca aatggatgat aaatgagcta       720
     tttgatatca tcagataaag acaaatttcg gcgccagcgt agggcggagt cccgcgccag       780
     tgtacggcac tgcgcgacag tcgtgcgcgc cacgccattg gtcgactttc ctcgttaata       840
     actttgttat taatggtcgg aggaaaaaat ggaagaggaa ctttcgactc agaatttcac       900
     tctctttcac acccccaaag gataatcgtg cgttttgaga caccctg                     947
//
ID   Mariner-N43_HSal repbase;    DNA;    INV; 1934 BP.
XX
AC   .
XX
DT   14-AUG-2012 (Rel. 19.04, Created)
DT   14-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N43_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1934
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 997-997 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1934 BP; 579 A; 365 C; 374 G; 614 T; 2 other;
     tacactcaga ggcaggtatg gtgtccctcg gcgatgtcgt atacgcctgt aaaacaatcg        60
     aaagcgatga caggcatata cgcatacgca tatgggcgta ctgtacagcg cgagagaagc       120
     gaagaaggag aagtggtggg agacgttccg atgttgcatc cttatcgcac gtcgcacgat       180
     cgagagagaa agcattacca gacgtggtac ggttaatggt gtccccaata gctgtctcac       240
     tcactctacg cttgaatgca gggaatatga gtgagacagc tatagagaca ccgcgctgtc       300
     tctataggtg tctcgctcgc tctaatagcc atgtatcgcg ctttcctctt ttctccttag       360
     cagaaatgcc gattaaggag ggaatcctgt ctgtagacca gaaaaataag ctattttcac       420
     gaattttttt ttcggaaact aagcagacga ttgatttcaa acttgataga aataataata       480
     tatatttwac tgatgagaat gaatttttat agcgttatat gaataataat gtagcagata       540
     caaagagaaw agcgtgatat gtttaggcgc gcgccgtttc atggctccca taaaatttcg       600
     agatacgact gggacaaaaa cgcaagtgag acaattaatc tacgaacttg ccgctatcgt       660
     ctgaactagg gaaataaaaa acgaactact tttcaatatt ttagggcatt taaaattata       720
     tttaaaaatc gccataaaaa tcgacagttt tacgttaaaa gtgaatataa aaaattaata       780
     ttttttaatt tcgctagttc acacgataga tagacatgtt tcgaatatgt aactacatgc       840
     tgaagtcgat cgatcgactt tttttataaa aaaaaggttt tttctctggt ttcaggagat       900
     gctatatagc gtctcgttat tattattgta atttttatta ttattaagag tctcctaatt       960
     tttttttgtt attttcaaga gcggagccta cattttaagt agcattttaa ggaggatgtt      1020
     gcatttattc tccctccttc ccgtagtctt ttcaaaagta aagatgtgtt gcgtctaaaa      1080
     aaaattgcac aatttgacat atcttacggc ataaaataag ttttttcgta aatttcatga      1140
     aatatcgttt tcttgcaaat aaaatattct taacgtaaaa ccatcgattt ttatggcgat      1200
     ttttcaaata taatttttaa atgccttaaa atattaaaaa agtagttcgt tttttatttc      1260
     cttagttcaa acgagttagc ggcaagttcg tagattaatt atcttacttg cgtttttgtc      1320
     ccagtccacc gtatttcgag attttatagg aaccgtgaaa cggcgcgcgc ctaaacacgt      1380
     cacgttattt tttgtgtatt tgctacatta ttattcatat aacgctataa aaattcattc      1440
     ttatcaataa aatatatatt attatttcta tcaagtttga aatcaatcgt ctgcttagtt      1500
     tccgaaaaaa aaattcgtga aaatagctta tttttctggc ctacagacag gattgcctcc      1560
     ttaatcggca tttctgctaa ggagaaaaga ggaaagcgcg atacatggct attagagcga      1620
     gcgagacacc tatagagaca gcgcggtgtc tctatagctg tctcactcat attgcctgca      1680
     ttcaagcgta gagtgagtga gacagctatt ggggacacca ttaaccgtac cacgtctggt      1740
     aatgctttct ctctcgatcg tgcgacgtgc gataaggatg caacatcgga acgtctccca      1800
     ccacttctcc ttcttcgctt ctctcgcgct gtacagtacg cccatatgcg tatgcgtata      1860
     tgcctgtcat cgctttcgat tgttttacag gcgtatacga catcgccgag ggacaccata      1920
     cctgcctctg agtg                                                        1934
//
ID   Mariner-N44_HSal repbase;    DNA;    INV; 913 BP.
XX
AC   .
XX
DT   15-AUG-2012 (Rel. 19.04, Created)
DT   15-AUG-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N44_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-913
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 998-998 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 913 BP; 278 A; 189 C; 185 G; 261 T; 0 other;
     ttgggtatta aacttaattt taaaggattt acaagagatg gcgcaatgag cacctaatgg        60
     catcggccca tactgaagcc aacttcatat gaaagccctg tcattaggct ttaagaatca       120
     gtatatttca tttggtcgaa gtgtaaataa catatttttt tagcgcattc aatatgtcga       180
     gttttgtgcc aacgaaacgc aatttgcggg aagcgttact tttttgtttc catttgaaaa       240
     aatcggcagc tgaaagtctt cgtttgctgt ccgaagctta tggggattat gctccatcga       300
     tctcaacttg tgagtactgg tttagacgat tcaaaagtgg agattttcca cttatccatc       360
     gttcgaaggt aatgctctgt atttggtggg atcagaaggg tgtggtctat tatgagctgc       420
     taaaacctgg cgaaaccatt actggggacc gttatcgaca acaactagta cagctgaacc       480
     gagaattgaa agaaaaacga ccagaatacg ccaaaagaca cgacaaagtg attttccagc       540
     atgacaacgc tcggccacat gtcgctaaac cggtgaagga aacgctagag ctgctcggat       600
     gggatgttct accccacccg ccgtattcac cagacattgc tccttctgat ttccacttgt       660
     ttcgatccat gcagaatcac ctttctgccc agcacttcag ttctttagaa gatatcaaaa       720
     aatggctcga ttcatggata accacaaaag acgagtcgtt cttccgccga ggaatccgcc       780
     ttttactaga aagatgggaa aaagttgtag ctaacgatgg acaatacttt gaataacatg       840
     tacttatcac tttgtttcga aataaacgtt cattttcaca aaaaaatcct ttaaaattaa       900
     gtttaatacc caa                                                          913
//
ID   Mariner-N4b_AAe repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 26.01, Created)
DT   15-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4b_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 163-163 (2021).
XX
DR   [2] (Consensus)
XX
CC   100% identical to consensus.
XX
SQ   Sequence 185 BP; 45 A; 43 C; 39 G; 58 T; 0 other;
     cagttaactc tcccttactc gatattccgt atctcgatat cgagttagag aaccatagta        60
     aaagttggtt ttcatggcta actcgatggt cccttggaac gcagttgcac tgcttttgtg       120
     ttctgtaact cgatacctcc ctaactcgat ggtcccttca atatcgagta agggagagat       180
     gactg                                                                   185
//
ID   Mariner-N4_AAe repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   15-JAN-2019 (Rel. 26.01, Created)
DT   15-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 158-158 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 185 BP; 42 A; 42 C; 40 G; 61 T; 0 other;
     cagttaactc tcccttactc gatattccgt atctcgatat cgagttagag aaccatagta        60
     aaagttggtt ttcatggcta actcgatggt cccttggatc gcagttgcac tggttttgtg       120
     ttctgtaact cgatacctcc ctaactcgat ggtcccttca atatcgagtt agggagagtt       180
     gactg                                                                   185
//
ID   Mariner-N4_ACe repbase;    DNA;    INV; 1644 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-1644
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 528-528 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~92% identical to the consensus.
XX
SQ   Sequence 1644 BP; 486 A; 315 C; 322 G; 521 T; 0 other;
     cagggtgtct cttaagatgg gtcggagcca cattgggggc ggagaatgga tcaaagggaa        60
     caaaaaattc ttatactatt ttgagatact cgctgtagtt ttcgaattag aaaaggaaac       120
     gtctaagcca atatgcggtt aagccgcgcc gcgcgaattc gtaggacggc ccacactcga       180
     gcggcggcgc gcagggagag ggaagtagcg cttcgttgcc tagcacagcc tggcatggcg       240
     atcctatgtg tttcgccgca tcgcgcctac attatccaaa aatgttattt tagctgaagt       300
     ttttcttatc attataaatc acgttattta gcacgattaa atacgtttta atacaattat       360
     agatatgtta agcgatgtaa ttaattagag catgcattac gcaaagcgta tgctgatcgt       420
     cgcgatacct ttccgcttgc tttattatac gatgtttcta tttaattacg cttcgagaca       480
     cacttcgtcg gagctatcgc gtcgttttat gctatattta gtcggagttt tattttttga       540
     catgttaatg catgtacact tgaaattata atataagctc gcgtagatag ccgctacatt       600
     gtaaatccag atgtattatt tttccatgta taatgacgca tttgactgag gttttttttc       660
     acatgtttct tgccgtttaa caagtttaat tgtacaccat taaaaacgtt cttaaatttt       720
     attaagcttt aatgttcact gatgaataaa atttaaattt tctgtcactg aaaagattat       780
     ttatgtatac gttaatgaga tgtttaagtt tgtagtaact gaaaacttaa atgtattgaa       840
     aaacactaat tgaaaattga gtgttttagt ttattttcat taaactatcc atcaaattta       900
     atgcccatgt tcattacatt aaaaaaatct gtaacttaca aggaaaggga ctcaactgtc       960
     cctctccgat tttaatgagc agtatgttat tctccagaca aaaataagcg acacgtattt      1020
     ttttatacgt gcccatacgc acttttaaag ggtgaaacac tccttggaaa aaaatgattt      1080
     ttctcttttg tagcgaatat cattggaaaa atcggtgttt ctctttcgaa gcgaatgtcg      1140
     ctggaactgt aagagataga aaaaaatttt cagaaaatag aatggcgtcg tataataaag      1200
     caagcggaaa ggtatcgcga cgatcagcat acgctttgcg taatgctcta attaattaca      1260
     tcgcttaaca tatctataat tgtgttaaaa cgtatttaat cgtgctaaat aacgtgattt      1320
     ataatgataa gaaaaacttc agctaaaata acatttttgg atagtgtagg cgcgatgcgg      1380
     cgaaacacat aggaccgcca tgccaggctg tgctaggcaa cgaagcgcta cttccctctc      1440
     cctgcgcgcc gccgctgccg ccgctcgagt gtgggccgtc ctacgaattc gcgcggcgcg      1500
     gcttaaccgc atattggctt agacgtttcc ttttctaatt cgaaaactac agcgagtatc      1560
     tcaaaatagt ataagaattt tttgttccct ttgatccatt ctccgccccc aatgtggctc      1620
     cgacccatct taagagacac cctg                                             1644
//
ID   Mariner-N4_AEc repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-536
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 584-584 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 536 BP; 184 A; 110 C; 109 G; 133 T; 0 other;
     cagtaagtca agtaagatcg tggtcggcct tactcaaagc taataaaaga tatcgcccta        60
     aatctatcat gaatccatag agggcacctt tgtccttgat gcactatcaa ggaagattca       120
     gttgtcattg aactttctta agagaatcac attaagcgcc atgagtacca aatacgcatc       180
     acgctatgaa gctgtgttcc tctgcactca cccaaaaatg tcacaattag cggctgctaa       240
     atatatgaaa aagtcgaaat cattcgtaca gaagtgggtg cagcgatata atgtggcaaa       300
     aaatgtcgat gatttaccgg aacgtggctc gatatgcaaa gtggacaaaa aagacgataa       360
     aaaaatagtg aatctgtttt cgcggaatcc tggcttaaca ctgcgtcaag gacaagcaaa       420
     attgaagcag aaaggtttag atatatcgta cgaaactatt cgaacctatc tcaaggctaa       480
     taacatgaaa tggtgcaaca ccacgctggt cgaccacgct cttacttgac ttactg           536
//
ID   Mariner-N4_BTa repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   03-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-209
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 890-890 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~83% identical to the consensus.
XX
SQ   Sequence 209 BP; 62 A; 48 C; 54 G; 45 T; 0 other;
     cagggtgatc caaaagtccc gcaccaccag caccaggcat cacccctgta acttttgaac        60
     aaattgagat agagacttga aattttgtga gtgctcctag gtcaaaggaa acgacttttg       120
     ggaaccccca aaattttaaa gggaccaccc tgaaaagggg caagaaccta ggggttatag       180
     gggtggtgcg ggacttttgg atcaccctg                                         209
//
ID   Mariner-N4_DSuz repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-586
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 146-146 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 586 BP; 201 A; 106 C; 79 G; 199 T; 1 other;
     cacttggacc tcgcttagca cggactcttt tagcacgaac tcggtcttac acggttacaa        60
     atttgctccc atcccccttt taacacgcta aaaacctcgt tcttacacga ttgcaatcga       120
     aaatgactga ttttttttga taaggagcca ccaaaaaaga aaacatgtta aaacaaactg       180
     gcttaaacta taaatgccac caaatgcatt tcaaatttga tatgaataga aacatatgat       240
     ctccttactt tttaacattt ttaagtttct ataaagttta acttgttaat taattatttg       300
     aagaaacttt tttaatttaa taccaacttt taattttgaa agtttgaatg ttatgcattt       360
     attaaaggca tatacataat aacttttggc taattttaaa caaatgtatg aaactttaat       420
     aaaaacagac caagtttgaa caatamaaaa ttttttttgc tgccaatttt gaattttaag       480
     aacgaaaccc cttattttgt actgaatcca tgtttcgctt aacacgattt cgcttaacac       540
     gaggatttct aggaacgtaa cccccgtgtt aagcgagggc caagtg                      586
//
ID   Mariner-N4_DTa repbase;    DNA;    INV; 1640 BP.
XX
AC   .
XX
DT   30-JUL-2021 (Rel. 26.11, Created)
DT   30-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1640
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6253-6253 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1640 BP; 603 A; 253 C; 252 G; 532 T; 0 other;
     cagttgcgaa aaaaataata gcaccacttc gtcacaggtt cttaatatta aagaaatatg        60
     tggaaaacgg ggatttttat ataagaagtg ttttttatta tcttgattag tattccacct       120
     atttgaaaaa attgatacgg atatcgaaaa tattgtctac atataatttt ttcagatttt       180
     aagaaaaaaa gtcaaaaaaa ggccgaaaaa aataatagca ccacttccgt tttctttaaa       240
     taaaacgtta cgatgcgcta atattcttgt gtataaagga tatattttat gagatttgac       300
     taaaactaac ttctcctgat atccagacat caaattgatt accatttggc aatacaagga       360
     catgtggaaa attttccaag tcggaaaaga aaaatattca aaaaagaaac atattggatg       420
     gaaaacggtc atgaaaaccg gttggattgg ttaggttttg gatcatcttc attaagaatg       480
     gcataaactt tgaaggataa cacagaaaaa ccgagtcctg gcccattttt ccttcaaaaa       540
     tgttatatca caaagcacaa agaatcttat cagggccaaa actaaactaa aacacgtgct       600
     taaaataata gcgaatattt taatagttgg ataatgtttc aataaacaaa tttataaaac       660
     atgcacttaa aaaaaaaatc ctatccgaaa tgcgaaacac atttacaagg gcatagggct       720
     cgtcaaaaaa acttacaaat gaatgcccgc aaacttatga gaatgtgtga aggcaaagtt       780
     aaattgggta agaagaaatc ctttttataa gtcatgtgtc ttctaaacac ctaaattgac       840
     caaaaacatg gtaccaaaac atccatttat tgagcatgga cctagtatta acataggctt       900
     gtttttcctt cttgaagtaa gatcaatacg gatgaataca tcgttcatga atcatcctat       960
     gatgtaaata gtaatacggt agtaattcgt agcttaaact gaatacaaaa tacttcttaa      1020
     atgaatcttt gaccaataaa atccggccag gatcacggtc aggatagcaa agaaagagtt      1080
     cgaaagtact cagtcagcaa tatacagtga cttgtgtact cgcttgacca taacacaacc      1140
     aaaaatcttc gagttttttt tttaaagaca gtttatacag ttaatctaaa acgtcttaaa      1200
     tcatttccga acaaaatttg aaaatatatc atgacttttg ggccccaatt cctttatagg      1260
     tagggtcctg acttgtttaa tcgatagtaa gtcattatat ccaaaaatcg caaaagatat      1320
     ttacacttta aacttagatt tacttgttag ctaccgccaa ctaaagatta agttacccat      1380
     ttgtcatttt tctacctttt attctatttt tagagaagtg gtgctattat ttttttcgta      1440
     cgtttttcca gttttgcata gattttctta aataagtcca gaaacctttt ataaagctaa      1500
     catttttttt catattcaaa ttatgtttag tcttactatt taaaacccgt tttgaaaagt      1560
     taaaaaagtt aaaaaatgtg agtagggtga ctagttaaaa tttttttggg ttagtggtgc      1620
     tattattttt ttcacagctg                                                  1640
//
ID   Mariner-N4_HSal repbase;    DNA;    INV; 868 BP.
XX
AC   .
XX
DT   16-APR-2012 (Rel. 19.04, Created)
DT   16-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-868
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 958-958 (2014).
XX
DR   [2] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 868 BP; 294 A; 141 C; 140 G; 293 T; 0 other;
     cagggtgagg cacctaaaac aggccacctg aataactttg aaaatatgca agatagaaaa        60
     aaatgttaaa tacagaagtt gtagggtttt aagtgacgca tcacatagca atactagtat       120
     gaccttgaac agcgtcatca aggttacggg aaggtcacct tgaatttttt aaatggaaac       180
     ccccattttt tattatatca tctttttcta ccaattaatt tgaacaactt ttgtctgaaa       240
     cattttttta tttgcctaat attttttgag atatttaagg aaaacttggt aactttttca       300
     atatttggct tacgatatct cggtaactat ttgtcggaag aaaaagtggt actagacttt       360
     tttactctat ttggtctcaa gaatatgctg ttacaatagt gccctaactt ttgttaactt       420
     gatgaccttt ggaaatttca aaatcatcaa gttaacaaaa gttagggcac tattgtaaca       480
     gcatattctt gagaccaaat agagtaaaaa agtctagtac cactttttct tccgacaaat       540
     agttaccgag atatcgtaag ccaaatattg aaaaagttac caagttttcc ttaaatatct       600
     caaaaaatat taggcaaata aaaaaatgtt tcagacaaaa gttgttcaaa ttaattggta       660
     gaaaaagatg atataataaa aaatgggggt ttccatttaa aaaattcaag gtgaccttcc       720
     cgtaaccttg atgacgctgt tcaaggtcat actagtattg ctatgtgatg cgtcacttaa       780
     aaccctacaa cttctgtatt taacattttt ttctatcttg catattttca aagttattca       840
     ggtggcctgt tttaggtgcc tcaccctg                                          868
//
ID   Mariner-N4_LMi repbase;    DNA;    INV; 1085 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1085
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 81-81 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1085 BP; 307 A; 249 C; 252 G; 277 T; 0 other;
     cagggtgatc aatcctcagc gcaaccgcct ttgcggcgtg cgacttgccg gcgacggcag        60
     ctgcggtgcc cgcttagcgg gccgcccgac tctgcactaa atttaatacg ggttggcgcg       120
     caagttattt ctgacataca taacacaaac acttagaaag aaaagtttat tactcacctg       180
     tattacgcaa ggaggtgctg gaactgcctc ccttcgttgt tcaagcattt ctgacacctg       240
     ctgaggaagt tgctcattac actcattgat tctgaaaaag gtgcatgacg gagaaattga       300
     cccgaactta actttctttt cggacgaatc atggttccac ctaagtgggt atgttaattc       360
     gcaaaataat cgttactgga gttaggaaaa gcctaactta attcacgaac agcccctgca       420
     cgatcaaaaa ataggagtgt ggtgcgctgt tagcggcgag agaataatag gccctatatt       480
     tttttcagga aacaattaat agtgacaggt atgttgaaaa catattgcgg cctttatttg       540
     cccaattaac tgaaagagaa catgccttcg cgacatttca gcaagactct gcgacggcac       600
     atacagccaa cttatcatta cgggaaattg gtaatgtgtt cggtgaaaga tttatcacta       660
     agaacatttg gccccctcgt tctcccgatt taaccacgtg cgatttttat ctgtggggag       720
     cattaaaaga gaaagtgtac aaatcaaatc cccacacttt agatgaacta aaaacaaaca       780
     ttcgtcatga aatcactgca atttctgaga gggaacttca gagtgtaatg agcaacttcc       840
     tcagcaggtg tcagaaatgc tcgaacaacg aagggaggca gttccagcac ctccttgcgt       900
     aatacaggtg agtaataaac ttttctttct aagtgtttgt gttatgtatg tcagaaataa       960
     cttgcgcgcc aacccgtatt aaatttagtg cggacgtcgg gcggcccgct aagcgggcac      1020
     cgcagctgcc gtcgccggca agtcgcacgc cgcaaaggcg gttgcgctga ggattgatca      1080
     ccctg                                                                  1085
//
ID   Mariner-N4_PBa repbase;    DNA;    INV; 204 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-204
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 630-630 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 204 BP; 77 A; 26 C; 28 G; 73 T; 0 other;
     cactgagaaa aaaatgctgt tgaatcaaca gcattagtct aattggaaat aattttgtta        60
     attcaatgac attattaatg aaacgaagat cttgattatt aaaacaagag catgatatac       120
     tgtttcatta ataatgtcat tgaattaaca aaattatttc caattagact atgctgttga       180
     ttcaacagca tttttttctc agtg                                              204
//
ID   Mariner-N4_RPr repbase;    DNA;    INV; 1617 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1617
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3284-3284 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1617 BP; 588 A; 248 C; 307 G; 473 T; 1 other;
     caataggcaa aaaaagtatt tgcacaccct gttatttcaa ggtttcatat aaaaaaaaaa        60
     tcgctttttt acccaaatta cgtttattta acttcttaaa tcaagcacta taagatgata       120
     aataaaaata tgcaaaagag tcaaataaat taagtataaa gaacataatg ttattttata       180
     ctgcaaaaaa agtatttgca cagctgtaat ttgggatctc ttgacatgta aataaaacaa       240
     atgccctaac aaaagaggat taacgtcacc tttggtactg tctatactcc ctttactaga       300
     ttcattagtt ttaattgtgt tttcaactag tgcattgaga tggctccaaa atctagaaaa       360
     attcctgtga gtgtgaaaca ggaagtgctt atattacatc gtgctggaaa cagtaataga       420
     gaaatcggaa ataaagtaaa tttatcgttt ttaacagtga ggtatatcat tgaaagagga       480
     acaacagaaa ataaacagcg aacaggtcga ccaagagcct taaatgaacg ggagaggagg       540
     aaggtcgtca aagacgcgct gaggaaacca actcacagcg ctcaaaaact tgcgcatgac       600
     ctggcgtctt gttcaggaaa gacggttaca cctcaaacaa taagaaacgt ccttcacaat       660
     aaaggcatac gaggcaggcg acccttaaaa aagccattta ttagtgaggt taataggaaa       720
     aaacgtcttg agttcgccaa agaatttgtt aaaaaacctg ttgaatttcg ggaaaaaatt       780
     atttttttct gatggaagca agattgaggt ttttaaacca caaaatataa taacaatctg       840
     gagaagaaat aaaactggtt tgaatacaaa aaatatatta aaaactgtta agcatggagg       900
     aggaaatatc ttggtttggg gctgtatggc ttactctggg gtgggtaatt tagaagttat       960
     tgagggcata atgacagctc ggtcttattt ggaggtgttg cgaggcaact tgaaggcaag      1020
     tgctgtaaaa ttakgtttgg agaacgattt tcatttccag caggataacc atccagaaca      1080
     tacggccaac attacaaaag aatggctcct ttataatgcc ccaagaagat tactgaaccc      1140
     acctcaatca ccagacctga acccaattga aaatctgtgg catattctgg acaggaaagt      1200
     ccgccagacc tctattacaa gtaaggagca cttaagacaa gtgtcagtta attcctggaa      1260
     caatttatca gatgaggtga caagaaattt agttgaatca atgccaaggc gttacaagcc      1320
     gtaattgaag ctaaagggat gcacactaaa tattaaggac aatgttatga ttggttatgg      1380
     gtcaaccaaa ttattttttg aaatgtttaa ctaggtgtgc aaatactttt tttgcagtat      1440
     aaaataacat tatgttcttt atacttaatt tatttgactc ttttgcatat ttatatttat      1500
     catcttatag tgcttgattt aagaagttaa ataaacgtaa tttgggtaaa aaagcgaatt      1560
     tttttttata tgaaacctta aaataacagg gtgtgcaaat actttttttg cctattg         1617
//
ID   Mariner-N4_SIn repbase;    DNA;    INV; 713 BP.
XX
AC   .
XX
DT   20-APR-2012 (Rel. 19.02, Created)
DT   20-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N4_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-713
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 406-406 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus. 27bp TIR.
XX
SQ   Sequence 713 BP; 207 A; 147 C; 163 G; 195 T; 1 other;
     cagggtgtac cagtagaatc cggacaattt tcaaattaaa attttcgcca tataataact        60
     tgtgagccgg caactagata gcattcaagt aagcctcatc cattgggaac aaaaacataa       120
     ctttgtcatg gccgagctgg ttaagcagtg tccagaatat aaccggagag ccgtgcttgt       180
     tgaaaatctt cgcgcgggac gtaccgtgtc cgaaataata aagttctccg attacccgaa       240
     atcgacggtt tacgacatta ttcatcgcta tacggcttcc aaagggtccg aagaaggttc       300
     ttagacggcc acttagtgca gaatcggctc ttcgaaaaca tgagmatgtg tcggagtaag       360
     gaattttggc ctgctaacag cccggacttt atccgctgga ttatttcgtg tgctgcgtgt       420
     ttgagggaca ctccaacaag actcgacatc ctaacgttgc atcgctgaaa gccgctattg       480
     aggcatcgtt cgcgagtatg gtgaaggaat ttttgacaaa ggcatgcgcg cgcttccggc       540
     ccaaaattga agcggtcatc gaagtagagg ggggctatat agaataaaat tgttttttag       600
     ggatgcccta acccaaatat aaaaatattt ttcatacgat tgttattttt tattaaaata       660
     aatgattctg aaaactcaca atggatttgt ccggattcta ctggtacacc ctg              713
//
ID   Mariner-N5_AAe repbase;    DNA;    INV; 328 BP.
XX
AC   .
XX
DT   24-JAN-2019 (Rel. 26.01, Created)
DT   24-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-328
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-328
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 159-159 (2021).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 328 BP; 101 A; 67 C; 39 G; 121 T; 0 other;
     cagtagtttc tcgattttat cactgctcgt tttaatatcg cttcaatata tcactctcga        60
     ttttagcacg gttttctgtt caattttatc acgccacaat aattgtatga agttcataca       120
     ttttacattg aaaaataacc tcaaacaacc aacatatatc tatttgaccc atctcttacc       180
     tgcttttcgt ttcattcgat ctatttccgc aacataaagc tcaaattttg atgaaaatta       240
     tatggcagaa aatgcatttt cattatatca cgcttcggta tatcacgcca aaaatttttg       300
     gatccgtgat ataatcgaga aattactg                                          328
//
ID   Mariner-N5_ACe repbase;    DNA;    INV; 80 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-80
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 529-529 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus.
XX
SQ   Sequence 80 BP; 23 A; 17 C; 18 G; 22 T; 0 other;
     ttaggtatgg gaaaaagttc gtggcgtttt tcccgttaga tgtaacggga aaaacgccac        60
     gaactttttc ccacacctaa                                                    80
//
ID   Mariner-N5_AEc repbase;    DNA;    INV; 848 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-848
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 585-585 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. The 3'-end is not determined.
XX
SQ   Sequence 848 BP; 305 A; 121 C; 121 G; 300 T; 1 other;
     cagggtggtc catttaaatc gaacatctkg aatatctcgc ttatttttga tgatacaaaa        60
     aaatgtttca aatgaaagtg gaacggtttc gagggggacg tattttggtc atgttgtttt       120
     tttctaggtg gaggcgtcaa aaagatatga aggtcacctc cactttttta aatggaattg       180
     tatgattttt tttacacaat atgatattcc tctaattatt ctgcatataa aagtattaag       240
     gtagtgatat caaaaaacca atagtttacg agatatttta cactttattc tggcacatat       300
     tgacataaaa tgttaaataa ctcgtaaact attaattttt tgataatcgt accttaatac       360
     ttttatgaac agaataatga gatgaatcag ttggtgtaaa gaaaacacat agttgcttta       420
     aaaaaatatg tatgcaaaat ggataatttt ttaaataagc aactatgtgt tttctttcca       480
     ccaactgatt catctcatta ttctgttcat aaaagtatta aggtacgatt atcaaaaagt       540
     taatagttta cgagttattt aacattttat gtcaatatgt gccagaataa aatgtaaaat       600
     atctcgtcaa ctattggttt tttgatatta ctaccttaat acttttatat gcagaataat       660
     tagaggaatc atattgtgta aaaaaaaatc atacaattcc atttaaaaaa gtggaggtaa       720
     ccttcatatc tttttgacgc ctccacctaa aaaaaacaac atgaccaaaa tacgtccccc       780
     tcgaaacctt ccactttcat ttgaaacatt tttttatatc atcaaaaata agcgagatat       840
     ttcagatg                                                                848
//
ID   Mariner-N5_BTa repbase;    DNA;    INV; 940 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   06-JUL-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-940
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 891-891 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 940 BP; 241 A; 228 C; 229 G; 241 T; 1 other;
     cagggtggcc cagacctacc gtaccaggcc tttttttcgg ttaatttggg tcgcacgaag        60
     tccaggatcg cggggatgaa tagggaatcg accccaagga atccgaattt catggtccca       120
     gagcccccct ggcgcccctt ggggggtaaa aggggggtcc gtacttcaaa agtcagggtt       180
     tatgtcaaaa ttttgaaatt atttcatcgg aatcagaacg tacggaaawt tttaacttaa       240
     atcgacacca agaaatccaa aatcggccca cccgtgtcca aaataccgac ccctaaaggc       300
     gggggacaga gccccctttc aaaaaaattc aagttcgtta aattgacgtg gagactcgga       360
     aaaaatgtgt attcatgggt aatcgacccc aaggaatccg aatttgaggg tcccgttgtc       420
     ctcagagact tttctgatgg ggcacagggg taacctccga actgtttaaa tttaaccggt       480
     gtggaggtta cccctgtgcc ccatcagaaa agtctctgag gacaacggga ccctcaaatt       540
     cggattcctt ggggtcgatt acccatgaat acacattttt tccgagtctc cacgtcaatt       600
     taacgaactt gaattttttt gaaagggggc tctgtccccc acctttaggg gtcggtattt       660
     tggacacggg tgggccgatt ttggatttct tggtgtcgat ttaagttaaa aatttccgta       720
     cgttctgatt ccgatgaaat aatttcaaaa ttttgacata aaccctgact tttgaagtac       780
     ggacccccct tttacccccc aaggggcgcc aggggggctc tgggaccatg aaattcggat       840
     tccttggggt cgattcccta ttcatccccg cgatcctgga cttcgtgcga cccaaattaa       900
     ccgaaaaaaa ggcctggtac ggtaggtctg ggccaccctg                             940
//
ID   Mariner-N5_DTa repbase;    DNA;    INV; 1444 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1444
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6254-6254 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1444 BP; 459 A; 252 C; 262 G; 469 T; 2 other;
     cagtggtggt cacgagttta gcacactttg ctcgcccatc gtattttcgc catatctcct        60
     ttctcgttag agatttcgac tttctgtttt cacccacctt cgtgctggaa atagagcaac       120
     ttccactgtt aatattgtcc cattcgcttt taccgttctt ctttggcgat attttaagtt       180
     gtgcaacctc caaaatgagc tggacacgag tttagcacac tttagcacat ttataccttt       240
     tcacccttct gatcattttt tttcgacttt ttactcctta ttgttattag tgaaccttag       300
     taaggtacaa aaataaagaa acgaaaaatc tagataaatc gcagggactc tggtacataa       360
     ataactaaaa ttatctaaat atcccatttt taggcaggat aagtgtccta gttgatcctt       420
     gttggtccta atcaattata tttacttgtt ttacttaaaa ttaaacaatt ataagataat       480
     gcggttgaaa acatagagct gggacctgat acagtgactc cacattgcat ggcatttcag       540
     cagatcctga ttttcgagtc ctttcaaatt ttctaaaaat ctccggacca catatttttg       600
     tagccaatta aaagacaaam aaaatgaggt atatwtcatt aggatcggtt aacaacttcg       660
     taggcaaagg catagcaaca ctttgatatt aagattcaag tttcgattct atgaaatttt       720
     gtatgcaaat cgtgctttaa gttaaagctg taatgttttt atttagaact ttatgcgtgt       780
     cgcaggaagt tgttaaccga tcctaatgat atatacctca ttttgtttgt cttttaattg       840
     gctacaaaaa tatgtggtcc ggagattttt agaaaatttg aaaggactcg aaaatcagga       900
     tctgctgaaa tgccatgcaa tgtggagtca ctgtatcagg tcccagctct atgttttcaa       960
     ccgcattatc ttataattgt ttaattttaa gtaaaacaag taaatataat tgattaggac      1020
     caacaaggat caactaggac acttatcctg cctaaaaatg ggatatttag ataattttag      1080
     ttatttatgt accagagtcc ctgcgattta tctagatttt tcgtttcttt atttttgtac      1140
     cttactaagg ttcactaata acaataagga gtaaaaagtc gaaaaaaaat gatcagaagg      1200
     gtgaaaaggt ataaatgtgc taaagtgtgc taaactcgtg tccagctcat tttggaggtt      1260
     gcacaactta aaatatcgcc aaagaagaac ggtaaaagcg aatgggacaa tattaacagt      1320
     ggaagttgct ctatttccag cacgaaggtg ggtgaaaaca gaaagtcgaa atctctaacg      1380
     agaaaggaga tatggcgaaa atacgatggg cgagcaaagt gtgctaaact cgtgaccacc      1440
     actg                                                                   1444
//
ID   Mariner-N5_HSal repbase;    DNA;    INV; 1540 BP.
XX
AC   .
XX
DT   19-APR-2012 (Rel. 19.04, Created)
DT   19-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1540
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 959-959 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1540 BP; 393 A; 363 C; 381 G; 399 T; 4 other;
     cagtgcctac caaaagttcc gggccaccta aataattttt gaacggtttg aaatatagga        60
     ttgaaattta taaggattca atgggatcac aaagtctatt atttaaccac aaaaacaccc       120
     acctccacac ccccgggggc cggggggagg gggagccaaa aaatctcaaa tggcatgtgg       180
     ggttgagtga gggctcgttc gaaagggctt tccgagacga aaacaacgcg aggtcgccga       240
     ggtctctacg attttttttc gcagagttat gatcatttga acatttctat tgagattttg       300
     cgatagcgag ggcccacggc gacaacagaa gaaaggtaag gcttcacgcg ggcacgcgcg       360
     ttcctgwgtg tgcgtgcgtg tgtgcgtgtg tgtgtgcgtg cgtgcgtgcg tgcgtgcgtn       420
     tgtgcgtgcg acgngtgcgn gcgcgtgtgt gtgtgcgtgc gtgtgtgcgt gcgtgcgtgc       480
     gcgcgtgcgt gcgtgcgtgc gtgcgtgcgt gcgtgcgtgt gcgtgtccgg ccaaccaagg       540
     caagcccgct agcgtgtccg gccaactaag gcaagaccgg gatgggaaca ctggcgtatg       600
     tgaaggaata aaaacactaa ttatttatca aatgttcaaa ttgacgtcct tcgacaactt       660
     ggcagtgtcc taacagatct ggtgatctcg gcggccattc tattgtgcct cttctaccaa       720
     tccatcgatc agtgaaaaca tcgtttagaa tatttcgagc ttgcagagaa aaatgagctg       780
     gagccccatc ctgctgaaac caaacattgt ggaaagcttc tccagcaata tcttgaatag       840
     ccggtatcac ttggtttctt agcaaattgc aataattttg aaaacaaagg tctatgagac       900
     taggtccgaa aatttagaag agctgcggga aaaaatagtg aacgtttcaa attcaatcac       960
     acccgatttt ttaactaacg taattgaaac gttttacgtt cgtttaagac actgccaagt      1020
     tgtcgaagga catcaatttg aacatttgat taaataatta gtgtttttat tccttcacat      1080
     acgccagtgt tcctatctcg gtcttgcctt agttggccga acacgcacat acacacacac      1140
     acacacacac gcacgcacgc acgcacgcac gcacgcacac acaggaacgc gcgtgcccgc      1200
     gtgaagcctg acctttcttc tgttgtcgct gtgggccctc gcaaaatctc aataaaatgt      1260
     tcaaatgatc ataactctgc gaaaaaaaat cgtagagacc tcggcgacct cgcgttgttt      1320
     tcgtctcgga aagccctttc gaacgagccc tcactcaacc caacatgcca tttgagattt      1380
     tttggctccc cccccccccg gcccccgggg gtgtggaggt gggtgttttt gtggttaaat      1440
     aatagacttt gtgatcccat tgaatcctta taaatttcaa tcctatattt caaaccgttc      1500
     aaaaattatt taggtggccc cgaacttttg gtaggcactg                            1540
//
ID   Mariner-N5_LMi repbase;    DNA;    INV; 802 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-802
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 82-82 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 802 BP; 198 A; 191 C; 229 G; 184 T; 0 other;
     cgtggtacag tcaataagtt ctgagactga ccgcatgacg gccctgtggt gcactatagc        60
     gcataggtgg cgccgtggta tggtaccatg tcagttagtc tctcgtccct gcaagagaca       120
     gttgagtgca tgcactggaa gcagacgtac ggtcgttgtt gtgacggtga gttgaatgcg       180
     ccagtcggac cttgacatgt cacagtttga gcaacgggca aacatcaagt tctgccagaa       240
     attaggcaaa accgctgccg aaacgtttga aatgatgcag caggtgtacg gtgaggacgc       300
     attgagtcgc agtgttgtgt ttaggtggca ccgacgtttt gtgcaaggac gggacagttt       360
     ggaagatgat gtgcgtactg gtcggccacg aacagttcga acggaacgca agatccagga       420
     agttgcaacg ttggtgcgtg ctaaccgctc ccaatcggta gacgctctcg cagcagtagg       480
     ggtcagccat ggtacttgcc acaaaattct gacggacgac ctcaacatgt ctcgtgttac       540
     ccagcacagt gtgccacgaa tcctgtcgca agaccaacgt gatgatcgca tgacgatttg       600
     tggtgacctc atcagttgtg cggacgatga tccgacgttt ctcaaccgga taataactgg       660
     agacgaaaca tggtgtttcc tttacgatcc gcaactgaaa cgacaatcag ccactggaat       720
     gcggcagcgt gtgcaacata cagagtcgtg tgggtgccta tcctccaggc gtcaagtctc       780
     agaacttatt gactgtacca cg                                                802
//
ID   Mariner-N5_PBa repbase;    DNA;    INV; 873 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Mariner DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-873
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 631-631 (2014).
XX
DR   [2] (Consensus)
XX
CC   >85% identical to consensus.
XX
SQ   Sequence 873 BP; 302 A; 129 C; 136 G; 305 T; 1 other;
     caggttcctt caaaagtatg gaaacggtca aataactcgt cagggatgca ttttagaaaa        60
     aaatgttaca ggggaagttg tagggtttca aaaggtctat ttactgatct tatcagtttg       120
     atcttgggtg ttgccaaggt catataaagg tcaactttgt ttttttaaat gggaaccccc       180
     attttttatt acatattctt gtagcttacc tcgagagctt ttcaaaacag tataataaag       240
     tattttttta gtaagtactt tctgagttat gaggtttgaa tttgatatgc aatttgacat       300
     aaaatataaa atatctcgta aactattcat tttttggcaa ctatatctta atacttttat       360
     gcacagaata atgagatgaa tcaattggtg taaagaaaat acatagttgc tgtttaaaaa       420
     aatgagattt gcaatatgca atgacgtatc ttttttgaaa aacaactatg tattttcttt       480
     acaccaattg attcatctca ttattctgtg cataaaagta ttaagatata gttgccaaaa       540
     aatgaatagt ttacgagata ttttatactt tatgtcaaat tgcatatcaa attcaagcct       600
     cataactcag aaagtacttg ctaaaaaaat actttattat actgttttgg aaagctctcg       660
     aggtaagcta caagaatatg taataaaaaa tgggggtttc catttaaaaa aacaaaattg       720
     atctcttata tgaccttggc aacgccaccc aaggtcaaac tgataagatc agtaaataga       780
     tcttttgaaa ccctacaact tctcctgaaa catttttttc taaaaattcc ttgatgagwt       840
     atttgaccgt tcccatactt ttgaaggacc ctg                                    873
//
ID   Mariner-N5_RPr repbase;    DNA;    INV; 606 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-606
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3285-3285 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 606 BP; 225 A; 87 C; 93 G; 201 T; 0 other;
     cagtggtcaa aaaaagtatt catacactaa gttttcttac tttatctact gaacttttgt        60
     ttctaggatg actatttctt cagcactgaa atcgaagata gtaacaatga atttaatgct       120
     ctcattttct tttataaaca taaagaattg attaaaaagc agaaaaataa aaccctattg       180
     aaaattcatg gtcttgtttg gagcgaaaaa ttcgaaaatt gaaatgttct tccagaaaag       240
     agctcataac caatttaaag aaatcatggg cagaaatcac atctcaagag acactaaacc       300
     tggtggaatc tatgccaagg aggcttcagg caataacaaa tgcaaaggga ttgcttacaa       360
     aatattaggt ctttagtttt gcgttaatta taacattcag actgagtgta tgaatactta       420
     ttttgcatac aataaattat ttttctgctt tttaatcaat tctttatgtt tataaaagaa       480
     aatgagagca ttaaattcat tgttactatc ttcgatttca gtgctgaaga aatagtcatc       540
     ctagaaacaa aagttcagta gataaagtaa gaaaacttag tgtatgaata ctttttttga       600
     ccactg                                                                  606
//
ID   Mariner-N5_SIn repbase;    DNA;    INV; 906 BP.
XX
AC   .
XX
DT   27-APR-2012 (Rel. 19.02, Created)
DT   27-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N5_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-906
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 407-407 (2014).
XX
DR   [2] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 906 BP; 294 A; 157 C; 197 G; 258 T; 0 other;
     cgaggtgtgt tcaaaaagta acgggaattt ttaaatttcg cgggtttgga gagtccgaca        60
     gtcaaatttt tttttgttta tgttggtata catgcccctg aagtatgctg aaatgttgag       120
     ctgtattcat tgtttacttt gtctgtggca gccgctaagg ttacacgtgt ttttatgagc       180
     tcggcgattt tcgtttctga aaaaaaatgg atcaaagaat ttgtatcaaa ttttgcgtaa       240
     aaaataacat aaagtgtaac aaagtgtgtg aaatgttaac aaaggcctat ggtgagtctg       300
     ctatgagtaa aacaagagtt tacgagtggt ataatcgttt ccaagatggc cgtgaagacg       360
     ttgaagatga cgaacgccaa ggacgcccca gcacatcaag aaccgatgaa aacgtcgaaa       420
     aagtgaaaga aatggttatg aacaatcgcc gaatcacaat cagagaagtc gctgatgatg       480
     ttggcatatc aattggcata tcaatggaaa aacaattcat ggcttttgca ccacgataat       540
     gcacctgctc acacttcatt gcttgttcgt gaatttttgg ccaaaaacaa tactgtaatg       600
     atgccccagc ctccatattc gccagacatg gctccgtgtg actttttcct atttccaaaa       660
     ataaagagaa ccttaaaggg ccgtcgtttt acaagcatag atgacattaa aagcgcatcg       720
     ctgaaagagc taaaggctat cccaaagatc gagtttgaga agtgtttcgg ggattggaag       780
     aagcgctggc ataagtgcat aatatctaat ggtgactatt ttgaaggcga caacattaat       840
     gtagacgaat aaataaatat ttttttcaaa aaacgaaaat tcccggtatt ttttgaacac       900
     acctcg                                                                  906
//
ID   Mariner-N6_AAe repbase;    DNA;    INV; 185 BP.
XX
AC   .
XX
DT   01-MAY-2019 (Rel. 26.01, Created)
DT   01-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-185
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 160-160 (2021).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 185 BP; 55 A; 32 C; 45 G; 53 T; 0 other;
     cagtcaaacc tccatgagtc gatattgaag ggaccatcga ctcatggaaa tatcgagtca        60
     tggaacagct attctttgga aagctgtttg aagggaccat catagtaacc atgattttat       120
     gtttttagta tggttccatg agtcgatatc gagtaatgga acatcgactc atggagggat       180
     gactg                                                                   185
//
ID   Mariner-N6_AEc repbase;    DNA;    INV; 934 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-934
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 586-586 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 934 BP; 294 A; 160 C; 194 G; 286 T; 0 other;
     cattctgtca aaaaagtacc gggaattgat catttaaaaa gcccgcttaa aggaattgtc        60
     aaaattcttt ttgtcgctaa gttggcataa ctgtcctcta tactgacgcg gagttggagt       120
     gccatctgtc atttaatgtg attatagtgc tcgattttat cagttcatct caagtgtgtt       180
     ttgcgatttt tacaatgaat gaaaagatcg aacaaagaat ttgtctcaaa ttttgtattg       240
     caaatggaat ttcgtgtgcc gaatcgctga agatgttaca gaaggcttac ggtgaatcga       300
     ctttatcaaa aacacgtgca tatgaatggt acagtgcatt gaaaagcggt cgagatgtgg       360
     tgaaaaacca cgtcaaagtc gatcaaaagt caaagtgatg ttaactgttt tctttgattg       420
     tcgtggtgtt gtgcactcgg aatttttgcc agaaggtcag acggtaaata aagaatatta       480
     tctgggcgtt atgcggcgtt tgagagagca aattcgtcga aaaaggccag atttgtggaa       540
     aacaaactca tggattttgc accatgataa cgcaccatct cacaaggcta tcattgtgaa       600
     cgaatttctg accaaaaact caacaaatat catcgaacaa ccaccgtatt caccagatat       660
     ggctccggct gacttttttc tctttccaaa actcaaatta ccacttcgag gcactcgttt       720
     tcagtcgata gaagacataa aagagaattc gcggcgagaa ctgaagtcga ttccggaaaa       780
     tgcgtttaaa aaatgttttg atgattggat tattcgttgg cataaatgta ttatttcgaa       840
     aggagcctac tttgaaggcg atacaataaa tttgaatgaa taataactat tttgtgtttt       900
     attgaccaat tcccggtact tttttgacag aatg                                   934
//
ID   Mariner-N6_DTa repbase;    DNA;    INV; 1149 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   02-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1149
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6255-6255 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1149 BP; 411 A; 163 C; 161 G; 414 T; 0 other;
     cagtgagtca cattaatatt cggttttttt tttttgtcaa cttcaaacgt gaataaaaag        60
     tttgaaacta ataaaacaaa aaatcaaata atgcagaaat aaagcttatt ttattacctt       120
     ttcatagata tatatatgtt attacttttt ttaaaattta actgagaaac atgcataaac       180
     gaaagaaaag ccgaatattg gggccacatt aatattcggt tttccctttt tgtactaaaa       240
     atcaaaaaaa ttatttagga aataaactaa atttgacatt tgaaatgcta gccattattg       300
     tctatggtat cgtttaaata ttttggcata ctttaaaatt ttttttttgc ctattctggg       360
     ccagtttttc caacctaaaa aaaggatgta cgggataatg tcaaaaaagt ttgcaaaggt       420
     acaacaaatt ctcgattttt tttttttaat ttatggttaa acccctagcc tttaactaga       480
     aatcagtttc agcgcaatcc attaatcaca ccaaaaaaaa tggatgggta caaaagcaga       540
     gtcgctcgaa aattcatttt tccttaagtt ttgtatggaa tcaagcagca aaacgcttct       600
     tctgagcgac tctgttttgt acccatccac tttttttggt gtgattaatg gattgcgctg       660
     aaactgattt ctagttaaag gctaggggtt taaccataaa ttaaaaaaaa aaaatcgaga       720
     atttgttgta cctttgcaaa cttttttgac attatcccgt acatcctttt tttaggttgg       780
     aaaaactggc ccagaatagg caaaaaaaaa attttaaagt atgccaaaat atttaaacga       840
     taccatagac aataatggct agcatttcaa atgtcaaatt tagtttattt cctaaataat       900
     ttttttgatt tttagtacaa aaagggaaaa ccgaatatta atgtggcccc aatattcggc       960
     ttttctttcg tttatgcatg tttctcagtt aaattttaaa aaaagtaata acatatatat      1020
     atctatgaaa aggtaataaa ataagcttta tttctgcatt atttgatttt ttgttttatt      1080
     agtttcaaac tttttattca cgtttgaagt tgacaaaaaa aaaaaaccga atattaatgt      1140
     gactcactg                                                              1149
//
ID   Mariner-N6_HSal repbase;    DNA;    INV; 1070 BP.
XX
AC   .
XX
DT   26-APR-2012 (Rel. 19.04, Created)
DT   26-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1070
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 960-960 (2014).
XX
DR   [2] (Consensus)
XX
CC   >80% identical to consensus.
XX
SQ   Sequence 1070 BP; 367 A; 164 C; 165 G; 374 T; 0 other;
     ggatgttcag cgtaatagtc cgtacgattt tttagacact tccgacggtt taaagaaaag        60
     gttgtaaggt gaacgttcat ctgcttcata caggctacaa cttgcaataa aatttgaaag       120
     aaaaattttc tccataaaaa tcaaagtcac cttgaatttt ttaaatggca ccatgcaatc       180
     ttttttacat aatattatag aggactttaa gacgaattca acgcactatc agaaatgtca       240
     cttttattaa taaaatataa aaacaataaa aaaaactcta acttatggaa gcaaatgttc       300
     aaattgcttg cctccttctg caatacaaag ttctgctctt tctaacaaat tactgtgtat       360
     agcagttatt atactatttg gatccaaagt tgcacaagct gtaattatct tttctcgaag       420
     atcttttgaa cattattaat taatgtttga tacataagag cttgcagata tccccataaa       480
     aagaaatcca tcggagataa atccggagaa tgagccggcc atcggactgg tctatatgta       540
     tttataatac gatttccaaa agtatcctga agataatttt gaactattcg tgcattatgg       600
     ctgggcatcg tcctgttgga aatatatact ccttatatca aaggggatat tttgcattag       660
     ctctggcaat tgtatattaa gaaaatgcag atatcgatgt gatgttaagt ttcctttgta       720
     aaaatataaa tatgttcaat taaataacga tttagtatgt cacaccagac attaatttct       780
     gtatcatttc ataagttaaa gtttttctat tgtttttata ttgttagtat taataaaaat       840
     gaatttttat agtgcattga attcgtctta aagtcctcta taatataaaa aagattgcat       900
     ggtgccattt aaaaaaattc aagatgacct tgatttttta tgaagaaatt tttttcaaat       960
     ttttttatcg caagttgtag cctgtatgaa gcagatgaac gttcacctta caaccttttc      1020
     tttaaactgt cggaagtgtc taaaaaatcg tgcggattac gttgaacacc                 1070
//
ID   Mariner-N6_LMi repbase;    DNA;    INV; 708 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-708
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 83-83 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 708 BP; 180 A; 144 C; 173 G; 211 T; 0 other;
     cgagggctat tcagaaagta gggaacgttt ccgtctgacg ccgctaggcg cgcgccgatc        60
     gcgtatattt tggtatgtgc gtgctcggca ggtcagtcgg catccagccg taacaacagg       120
     aacgtctctg cgcttctggt tttttcgata ttcgaatttg aaatgtgcgc tgcaatcgaa       180
     aatcccgcca gttgtgaggt gcggtctgtg atacggtttt tgttggcaaa aaacctaaaa       240
     cctatagcaa tttatcgtga actgtgcgaa gtgtacggaa acaacgtaat gagtgaatgt       300
     tccgtccgga aatggtgcat tcggtttaaa agtggccgaa ccaacgttca tgatgaagag       360
     aagagtggac gcccgagcat tgtgactgac gatcttgtcg ctaaagttga tgaaacgatt       420
     cgtgaaaacc gtcgcttcac aataacggag ctttcgcttt cttttccaca agtttcacgg       480
     acattgttgt ttgacattga ctcactggct gaagtctcag gcggcagaat tttacgacga       540
     aggaatttca aagcttgtcc accgctatga taagtgcctc aatttgtttg gtgactatgt       600
     ggaaaagtag tattgtagtc gctctttcag atgtatataa taaaatgttt ttcttgtact       660
     tagttttttt taatgccaaa acgttcccta ctttctgaat agccctcg                    708
//
ID   Mariner-N6_PBa repbase;    DNA;    INV; 1261 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1261
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 632-632 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1261 BP; 479 A; 167 C; 173 G; 442 T; 0 other;
     cagggtgtcc cataactctt aattaatatt tcaaggggtg aaagaggatg gaattttgaa        60
     ctaaaagttc ctttcccaat tttgactcag accattattt accgagttat taacgattaa       120
     agttgatcaa tcagattgcg cccagccgga gtacgtagaa gcgtagcgtg ctgtgagccc       180
     ctcgtgcttt ctgtacattc tcccgattaa aatttttttc taatttttta tattaattaa       240
     taaataaatg aaatgaaatt aattaatcaa taaatgagta aataaataaa taagtagata       300
     aataaataaa taaataagtg agaaaagtta cagttagaaa tttatccaat ttctgattgt       360
     ttttttaata ttatttatta tttatttatt tgtttattta tttaattcaa ttatttaatc       420
     catttgttca atttagttat ttaattttca tagctaacct agcagcgatg gggaaaaaat       480
     aattacggaa tatttgttat gggtgcaaaa aaagactatt ggcaaaaaac attatcaaaa       540
     taaattgttt ctaaataaat tgtttaaacg acctcttcaa aaattgtttt gacacgtgtc       600
     atgtatggtt cttacgtata aatattataa ataaatatta taaataaatt aatattgtta       660
     taaataaatt aataataaat taattacgta gattaaatta tttacgtatt cgttaatttc       720
     ggattttaaa acgataacgc catcgaattg taagaatcga attgtaagaa aaaatacgta       780
     agaatcatac atgccaacgt tatgaaataa tcaaaataaa tttttcacaa gcaatttgtt       840
     taaacaattt cttaaaaaaa ctaattttaa ttggaaactg atagctccat cgatttctac       900
     aaaaaaaaaa atacgtaaga accatacatg atacatgtca aaacaatttt tgaagaaatc       960
     gtttaaataa tttatttaca aacaatttat tttgataatg ttttttgcca gtagtctttt      1020
     tttgtaccca taacaaatta gaataaaatt ttaatcgaaa gaatgtacag aaagcgcgag      1080
     gggcctcaaa gcacgctacg cttctgcgta ctccggctgg gcgcaatctg attgatcaac      1140
     tttaatcgtt aataactcgg taaataatgg tctgagccaa aattggaaaa ggaattttta      1200
     attcaaaatt ccatcctctt tcactccttg aaatattaat taagagttat gggacaccct      1260
     g                                                                      1261
//
ID   Mariner-N6_RPr repbase;    DNA;    INV; 1639 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1639
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3286-3286 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
SQ   Sequence 1639 BP; 622 A; 246 C; 298 G; 473 T; 0 other;
     cactgggcca aaaaagtctg tgaacactaa cctaaatttt attactttta ttattatctt        60
     attagaaact tcttttattt tcaaatgaaa tatactattc gatagacaga aaccagagtt       120
     tttcatttta tattcaatct tttatttttg ttcagcagga atatcacaat taaatgttta       180
     acaaaacaac accccaaacg aatgcaaaaa aagtctgtga acagctgtat aaatatgtaa       240
     aaacattaag ataacaaaca gaaaaacgat tgaataaagt ttcaaagttc tctattgtat       300
     tgtagaaacc actacagtca gttttgtgaa taaataatct aattagtaca tatttaacca       360
     ctaatatgga agttcccaga ccaattcgag aacttattgt gacgttgcga aatgaaagaa       420
     aaagtattcg agaaataggg aagatagttc aaaaaaaccc ttcaacggtg cataatataa       480
     ttaaaaagta cggaaatgtg attagtaggc cacgcagtgg acggccacca aaacttaatt       540
     cctttcataa actgcaaatt ctgaagtctg ttcgagaaga acccaggaca agcgctcaaa       600
     aaatcagtca agaattatca agtggttatg tgtaagcgta acaccacaga caattagaaa       660
     taaattacat gaatacgatt attgcggtcg agtcccgagg aaaaaacctt taatcaataa       720
     aataaatagt aaccgccgat tggatttcgc gaaagaatat gtttctaagc tttctagttt       780
     ctgggaaacc gtaatctttt cagatgagtc gaaattcaat gtatgtgggt ctgattgacg       840
     acaaaaagtg tggcgaaaaa gaaatgaagc tatgaaaatg aaaaatatga agcctacttt       900
     taagcatggg ggaggcaaca ttctggtgtg gggtgcatga gtgctaaagg agtgggcaag       960
     ttagatctaa ttaatggtat gatggaccaa tatgtgtatg tggatatatt aagacgcaat      1020
     ttaaaagaaa attcaaaaaa attagggttg gagggaacgt ttgtcttcca acaagacaat      1080
     gacccgaaac ataccgcact aaaaactcgg gaatggcttt taaataatac actctggcgc      1140
     ctaaacaccc ctccacaatt gccagacctt aacccaatag aacatttgtg ggatgaaatc      1200
     agccgcgaaa taaataaacg aggaataaga aaccgtgaac aactaaaaaa cgctatttta      1260
     gaagagtggg ataaaattcc aacattgacg accacaaaat tattaggatc gatgaaagct      1320
     cgcttgttgg aagtgattag gaacatagga ggtcctacaa gtttttaaaa tttataattc      1380
     acgtacaatg tgtaagaatg atttatttct gcaaagtgtt cacagacttt ttttgcattc      1440
     gtttggggtg ttgttttgtt aaacatttaa ttgtgatatt cctgttgaac aaaaataaaa      1500
     gattgaatat aaaatgaaaa attctggttt ctctctatcg aatagtatat ttcatttgaa      1560
     aataaaagaa gtttctaata agataataat aaaagtaata aaatttaggt tagtgttcac      1620
     agactttttt ggcccagtg                                                   1639
//
ID   Mariner-N6_SIn repbase;    DNA;    INV; 2373 BP.
XX
AC   .
XX
DT   27-APR-2012 (Rel. 19.02, Created)
DT   27-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N6_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2373
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 408-408 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2373 BP; 750 A; 440 C; 443 G; 740 T; 0 other;
     cagggtgatt caaaataacc tattggtccc gaagctggca tattcgtaat cgaattctga        60
     gacgattttt ccttttgcaa aaatttgtcc ggagcttagt tttcaagtta caataagaat       120
     tagttagcgt atgacgggtc gggtacaagt ggtagacagg ggcggcgcga ctcactgtta       180
     cacgcgggtg tttccgtggg gcacctcctg cgctcaaatg actgacaaaa gtacatggac       240
     agcacattcc tatttaaact tttctctctc tctctctctc tctctctctc tgtcacttta       300
     attatgctac atttaacttg tcaaatttcg atctctgtca tccggccgtc aaatatcggg       360
     atgaccgtga aatcttcaag taagtttaca ttattataat aaatgtacgc ccgcgaataa       420
     taaaatttaa tgcaaattag attacttaaa tgtgcacttg caagttaaaa gtagcacttt       480
     taaaacgcac aagaaaggga agaaagagag agaaagagag agagagagag agacggggga       540
     ggagggggct ttaaacaagt ttaagcacgt ttactcacgc acacggcgat cagcttattg       600
     tttccacgat gcgacagttc aatttaaatt tgtcctttat ccagatctat ccctcgaagt       660
     tgtttcacat ttcaccacat ttacactatt tactctgcac ttgatcgata aacgcggaac       720
     tacgcgacga accgatcgat cgactttatt aattactatt aatcactact ctgatcacta       780
     caatcattcg atgcgttaaa attactcgaa gaaacacgtg tttacgttac gatcacacaa       840
     cacgtgttca ctcgacgata tcaagcagtc gactggatgt tattggttat gtcgttataa       900
     gagtgtcgaa cgattggtta aagccataag tcaaaacgcg gcaattcaaa atgaaaatat       960
     tgattaatac gatttacatc aatacaattt attagaaaaa tgtggcaaat gcatgtttat      1020
     cattatttgt taaaaattgt atgatccata agtgacttta tcaagataat tattttgaac      1080
     atttattatg aagaaaactt caaggatata attcttgaaa tctccttgca gcaacggata      1140
     atctgccctt ttcagggcaa ccaaatattt tatttcgagg aatattttca cagttttcgc      1200
     aaataataaa aaataagaaa taaaaaaaat atttagaaga aattgatttt gataaaatca      1260
     tttcttgaat attttgaata aataataatt atcttgataa agtcacttat ggatcataca      1320
     atttttaaca aataatgata aacatgcatt tgcaacattt ttctaataaa ttgtattgat      1380
     gtaaatcgta ttaatcaata ttttcatttt gaattgccgc gttttgactt atggctttaa      1440
     ccaatcgttc gacactctta taacgacata accaataaca tccagtcgac tgcttgatat      1500
     cgtcgagtga acacgtgttg tgtgatcgta acgtaaacac gtgtttcttc gagtaatttt      1560
     aacgcatcga atgattgtag tgattagagt agtgattaat agtaattaat aaagtcgatc      1620
     gatcggttcg tcgcgtagtt ccgcgtttat cgatcaagtg cagagtaaat agtgtaaatg      1680
     tggtgaaatg tgaaacaact tcgagggata gatctggata aaggacaaat ttaaattgaa      1740
     ctgtcgcatc gtggaaacaa taagctgatc gccgtgtgcg tgagtaaacg tgcttaaact      1800
     tgtttgaagc cctcttctcc ctccgtctct ctctctctct ctctctctct ctctctctct      1860
     ctctcctttc ttcccttgtg cgttttaaaa gtgctacttt taacttgcaa gtgcacattt      1920
     aagtaatcta atttgcatta aattttatta ttcgcgggcg tacatttatt ataataatgt      1980
     aaacttactt gaagatttca cggtcatccc gatatttgac ggccggatga cagagatcga      2040
     aatttgacaa gttaaatgta gcataattaa agtgacagag agagagagag agagagagag      2100
     agagagagag aaaagtttaa ataggaatgt gctgtccgtg tacttttgtc agtcatttga      2160
     gcgcaggagg cgccccacgg aaacacccgc gtgtaacagt gagtcgcgcc gcccctgtct      2220
     accacttgta tccgacccgt catacgctaa ctaattctta ttgtaacttg aaaactaagc      2280
     tccggacaaa tttttgcaaa aggaaaaatc gtctcagaat tcgattacga atatgccagc      2340
     ttcgggacca ataggttatt ttgaatcacc ctg                                   2373
//
ID   Mariner-N7_AAe repbase;    DNA;    INV; 573 BP.
XX
AC   .
XX
DT   03-MAY-2019 (Rel. 26.01, Created)
DT   03-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-573
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-573
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 161-161 (2021).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 573 BP; 202 A; 75 C; 93 G; 203 T; 0 other;
     cagtattgga caaaacattt gcaacttttt cgattttcca tacaaaatga ccaactttgg        60
     taagctatat ctcagttatt tatggaccga tttgaatgaa attttggcag aacatcagac       120
     ataacttgaa ttttaacata tatttttgag tgatttttcc aatcacaagt tcaaaagcag       180
     taacggtttg actaaagtga attttttgac gattttttat aaatgacata actaaacata       240
     ttgaaggaat agcttcatgg tatcttcagc aaagttgtag attttaacga gatgaacaag       300
     tttgctgaag acagtttttg tgtagggcta tcagattttg agataaatag ttttgaattt       360
     ttcgtcgaaa attacacttt agataaaccg ttataactta taaactcgtg attggaaaaa       420
     atattcaaaa atatatgtta aaattcaagt tatatctgat gttctgtgaa aatttcattc       480
     aaatcggtcc ataaataact gagatctagc ttaccaaagt tggtcatttt gtatggaaaa       540
     tcgaaaaagt tgcaaatgtt ttgtccaata ctg                                    573
//
ID   Mariner-N7_ACe repbase;    DNA;    INV; 545 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-545
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 530-530 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~95% identical to the consensus. It is an internally
CC   deleted derivative of Mariner-7_AEc.
XX
SQ   Sequence 545 BP; 151 A; 129 C; 117 G; 148 T; 0 other;
     ctacatgggc tgaaaagtcc cgggattttt caatacgtgg cgccactaga aaatgaacat        60
     gattcatttc gagaggttca tctgtcacta gtttatgtat gaagtttcat gacatttcgt       120
     tcattcgttt acaagctaca gtcgtttaag tggcgctact ttcgccttcg ttctgtacca       180
     tcacgataac gcaccgtcac acacgtcctt gaaagcgatg gccaaattgg accaattacg       240
     attcgaattg gttgctcacc caccgtattc tccagacttg gcccccagcg actattatct       300
     gttcccaaac ctcaagcggt ggctccaggg aaagagattc acatcgaatg aggaagtcat       360
     cgcggaaacc gaggcgtatt tcgaaggctt ggacgtttcg tactacagaa agggcatcga       420
     aatgttggaa aatcgctata ccaagtgtat cgccctcgaa ggcaactatg ttgaggaata       480
     aatataactt tgcccaaaaa acgcttgttt tcattaaaaa tcccgggact tttcagccca       540
     tgtag                                                                   545
//
ID   Mariner-N7_AEc repbase;    DNA;    INV; 543 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-543
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 587-587 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 543 BP; 159 A; 108 C; 131 G; 145 T; 0 other;
     ctagatgggg tgaaaagtaa cctccttgac cgccagaatg cgccactact gcaaaaaagt        60
     ttatggtgcc ttgtagtccg ttcatattta ggcagacatg ccaagtggca gtgcgatact       120
     gcccttagtt ttgttttgag agctgattgt tgttgacgtg tttgcgaaaa cgattttcgt       180
     tctctcataa aacattattt tttgagaggc aaaacggcga aggaaacaaa agaaaagttg       240
     gataaatatt atgtggctaa tactccgtca gattacaccg tcaaatattg gtttcgagag       300
     tttcgtggtg gccgcaactc cactaccgat gaagtccgca gcggcaggcc ctccgatgcg       360
     gttaccgagg aaaatgtcaa aaaaatacat gaaatggtgt tggctgaccg gaaagtgaag       420
     gtgcgcgagc tagcagatgc tacaaagatt agtactgagc gaacacgcca tattttgggc       480
     gagattctgc ataagaaaaa aatttttttc attcccaagg aggttacttt tcaccccacc       540
     tag                                                                     543
//
ID   Mariner-N7_DTa repbase;    DNA;    INV; 1498 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1498
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6201-6201 (2021).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
SQ   Sequence 1498 BP; 497 A; 236 C; 249 G; 514 T; 2 other;
     cagtggctcc atcgcataat cggacaccta ctttcataaa ataaacatgc aaaaaaaatg        60
     aataaaatgg tttaaattcg tcgttttttt tgcttttact tatacataat gctaatatct       120
     tccaaaaaca taaacaaaaa ttacatattt tccacgaaaa cacttagttt tccaacaaaa       180
     acaacaaaaa atccgatttt taaggttcaa cgaataatcg gacactcgct aaatatggtt       240
     attttttatg gaacttgctg caaacttggg gtttttggca ttgagattac tttgtagtag       300
     aaattaagag aagaaaccat cactacactg caaaaaaaag ttgaaatggc tccaaggaaa       360
     gccattttct gtgaaacttc gtcagttgat tggaaaactc aatttcgaac tgaaaactgt       420
     acggaaattc actgsattgg tcggagaagt caagtccatt gtccaggaca ttattatata       480
     gttccgggat acattttaat ttgacaatag aggcggggaa ggccaaatca agatgttaat       540
     gacggcgtaa ttccaaagta ccttaagatt ttaagggata aaaaatattt aaaaaattat       600
     tgtttaatgt ttctttcgtt ggtctgaaag tgtattaaac aacmaacaaa atgaggtatc       660
     gtttataaaa atcggttcac aacttaccta aaagatgggt tcgagaacat tcttgttaag       720
     ctgaaagctt cgtttttatt gaaatttgta tggaaatcgt gctttttgac caagcagtta       780
     ttggtttggt tatagtttgg tccatttttt aggtaagttg tgaaccgatt tttataaacg       840
     atacatcatt ttgtcggttg tttaatgcac tttcagacca acgaaagaaa cattaaaaaa       900
     taatttttta aatatttgtt atcctttaaa atcttaaggt actttggaat tatgccgtca       960
     ttaacatctt gaattggcct ttcccgcctc tattgtcatc ttaaaatgta tcccggaacc      1020
     tcattataat gtccaggaca atagacttga cttctccgac caatccagtg aatttccgaa      1080
     cagttttcag ttcgaaattg agttttccaa tcaactgacg aagtttcaca gaaaatggct      1140
     ttccttggag ccatttaaac ttttttttca gtgtagtgat ggtttcttct cttaatttct      1200
     actacaaagt aatctcaatg ccaaaaaccc caagtttgca gcaagttcca taaaaaataa      1260
     ccatatttag cgagtgtccg attattcgtt gaaccttaaa aatcggattt tttgttgttt      1320
     ttgttggaaa actaagtgtt ttcgtggaaa atatgtaatt tttgtttatg tttttggaag      1380
     atattagcat tatatataag taaaagcaaa aaaaacgacg aatttaaccc attttattca      1440
     ttttttttgc atgcttattt tatgaaagta ggtgtccgat tatgcgatgg agccactg        1498
//
ID   Mariner-N7_HSal repbase;    DNA;    INV; 879 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-879
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 961-961 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 879 BP; 272 A; 168 C; 165 G; 274 T; 0 other;
     cagggtgtcc cattttaatc cggccggctg aataaaattc gaggatgata ttttccagaa        60
     aaaaatgtca gacaaatgtt gctcagttct aagggggaca ttcgatgcca tcaacaattt       120
     tgacctcggg tgaagggttc aaggtcattc aaggtcaact tttttttctt aaatgggaac       180
     ccctattttt cacatcggca atcgattcta cgtaaaaaaa aatgaaactt ttgtctgaag       240
     catttttttt tataacgcaa actaatttca cttattcagc ctccaaaatt gaaattttca       300
     aactttctga attttttact cgagaatggt ggggtttggg gggaaattgc agaagacaaa       360
     aagttcttgg aatgctgcaa ggaattcact cgaattttcg catagttgat cgtgcacttt       420
     tttccgccaa tgttctacct gtcaggaggt acctcgaaaa aagtgcacga tcaactatgc       480
     gaaaattcga gtgaattcct tgcagcattc caagaacttt ttgtcttctg caatttcccc       540
     ccaaacccca ccattctcga gtaaaaaatt cagaaagttt gaaaatttca attttggagg       600
     ctgaataagt gaaattagtt tgcgttataa aaaaaaatgc ttcagacaaa agtttcattt       660
     ttttttacgt agaatcgatt gccgatgtga aaaatagggg ttcccattta agaaaaaaaa       720
     gttgaccttg aatgaccttg aacccttcac ccgaggtcaa aattgttgat ggcatcgaat       780
     gtccccctta gaactgagca acatttgtct gacatttttt tctggaaaat atcatcctcg       840
     aattttattc agccggccgg attaaaatgg gacaccctg                              879
//
ID   Mariner-N7_LMi repbase;    DNA;    INV; 863 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-863
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 84-84 (2015).
XX
DR   [1] (Consensus)
XX
CC   >83% identical to consensus.
XX
SQ   Sequence 863 BP; 221 A; 187 C; 226 G; 229 T; 0 other;
     cagggtgaca attattgaac tatatgaaat aaaatcgtca taacttctga acggtttgcg        60
     ttaggacgtt caaactgcac ggtggccgcg gggcatggtg ggaattagta tgcgaaagga       120
     ctttgatgtg aatatggttt ggtttagcga cgaagcccac tttcatttgg atgggttcgt       180
     caataagcaa aattggcgca tttgggggac ggagaatccg catttcgcga tcgggaagtc       240
     tcttcaccct caacgggtga ctgtgtggtg tgcaatgtcc agtcacggaa taatcggtgc       300
     gatattcctt gatggcacgg tgactaccga acggtacgtg aaggtgttgg aagatgattt       360
     catccccatt atccaaagtg accctgattt cgacaagatg tggttcatgc aagacggagc       420
     tcgaccccat cgaagcagga gagtgtttga tgtcctggag gagcactttg gggaccgcat       480
     tctggctctg gggtacccag aggccactgg catgggcctc gattggccgc catattctcc       540
     ggatctgaac acatgcgact cctttttgtg gggctatatt aaagacaagg tgtacagcaa       600
     taaccccaaa accattgctg agctgaaaac agccattcag gaggtcatcg acagcatcga       660
     tgttccgaca cttcagcggg tcatgcagaa tttcgctatt cgtctgcgcc acatcatcgc       720
     cacggaaggc aggcatatcg aacatgtcat aacctaaatc cgaatatctg tagtgacgtt       780
     tacatgttga ataaagtgtg tgcacgccgt agtttgtaac taatttacgt tttgtttcat       840
     atagttcaat aattgtcacc ctg                                               863
//
ID   Mariner-N7_PBa repbase;    DNA;    INV; 774 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   04-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-774
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 633-633 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. 3'-end is undetermined. 5'-end is
CC   similar to that of Mariner-7_LHu.
XX
SQ   Sequence 774 BP; 240 A; 121 C; 127 G; 285 T; 1 other;
     ctaacaaggg gagggcgcgg acttgggaac accgattttg aaaagactta tatatgttaa        60
     agtactctac tagaagagta cttgagtaaa aggataggac gccatattca gttgttttcg       120
     agaaaaaccg gtttaaagtt tatagcgttc cttatatacc ggccgcgtta agctcattgt       180
     cgccgagatc gggtagctcg ggcgctcggc cctgtactac caatctgtcg acccgggttc       240
     gattcctgcc tattatactt ttttttaatc tagaaaatat ttatttatta tattattatg       300
     ttaaatatgt attatattat tatataaaat aaaattaatt taattaacaa ttgtttatat       360
     ttaaaatttt cacttttaac ttcaattaat aatttaaaat agttttatta ttataattat       420
     tatttaatac aagaaatatt ttattcattg taattttatt tggtccgtaa ttttttactc       480
     aacgttaagt tactcactgc tccgactcta atatttgtat atttgtatac ctgatgtcct       540
     caggtaacag tttttgacct ccctwccaca ctacttttct accttaacgt atatctctac       600
     acaaagaaat tcgaaatctc ttctgatcct gttcttgaac aaaggcagtg agcgatagac       660
     ttcaacgtga gctagtgacg ggatcagttg atagttgata cttgagttga gcgaagattt       720
     caaaaagtga ttttttgaag tgtatttgcg aaatttattg taataaaaaa atgg             774
//
ID   Mariner-N7_RPr repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1303
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3287-3287 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1303 BP; 414 A; 229 C; 233 G; 427 T; 0 other;
     cagggtgacc agagttatat gctccaccca cttttttttt taacggcggg aaatttcgaa        60
     aaaataaaaa acacgtattt aatcattttt agtctagttt attttcagtg attgacccat       120
     ttttttaaac ccctgtatct cgagatacag catccaactt ttgtttttca aatggaacgt       180
     tatatttttt gttgcatatt tttatagtat ttgagctcct aaaaaaaaca aaaaaaaatt       240
     ttttgaaatc ggttaggttt ttcaaaagtt atggtaattt aaaatatgaa aaacaaattt       300
     cagtttactg tcaaaattac gttatttttt ttaaagaatc tgttcaaact gggcacaatc       360
     aacggatagg caagccaaaa ctctggactc ccacgctttg cttgtagcag cacttatggt       420
     ggcgaagtca agatctaggc aggctagagt tattcgacgt tcaggttgtt ttttctacaa       480
     acgtttggtg tggagtttta ggaaatcaac taatcggccc atacttctac agagagaact       540
     taactggtgc aaggtatcta actttttttt aagagacatt ttgccagttc tgcttgaaga       600
     tgttcctcta caacgtcggc tagatatgta ttttcaacaa gatggttgcc cggcacataa       660
     tgcgagagtg gttcgaggtt acctggacag aaatttccat gaaaagtgct tagggactca       720
     ttgtcccatc caatggccac ctcgatctcc ggacttaacc ccaatggact attttttgtg       780
     gggataccta aaaaataaag tgtacagtat ccttaatccc gtggcttcag tcgatgatct       840
     gaaacgtcga ataactctag cctgcctaga tcttgacttc gccaccataa gtgctgctac       900
     aagcaaagcg tgggagtcca gagttttggc ttgcctatcc gttgattgtg cccagtttga       960
     acagattctt taaaaaaaat aacgtaattt tgacagtaaa ctgaaatttg tttttcatat      1020
     tttaaattac cataactttt gaaaaaccta accgatttca aaaaaatttt ttttgttttt      1080
     tttaggagct caaatactat aaaaatatgc aacaaaaaat ataacgttcc atttgaaaaa      1140
     caaaagttgg atgctgtatc tcgagataca ggggtttaaa aaaatgggtc aatcactgaa      1200
     aataaactag actaaaaatg attaaatacg tgttttttat tttttcgaaa tttcccgccg      1260
     ttaaaaaaaa aagtgggtgg agcatataac tctggtcacc ctg                        1303
//
ID   Mariner-N7_SIn repbase;    DNA;    INV; 2359 BP.
XX
AC   .
XX
DT   27-APR-2012 (Rel. 19.02, Created)
DT   27-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N7_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2359
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 409-409 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. ~540bp TIR.
XX
SQ   Sequence 2359 BP; 817 A; 363 C; 366 G; 811 T; 2 other;
     cactcgacag caaaattaag ggatcaccta ttctgactcc gaaaaatagg cgtaattcaa        60
     gagagtgtaa ctttgtcaaa aatgatcgta aaaaaattta aaaaagcatt ttaaagcttg       120
     aaatctctag ttttgagatt gataagtcat taaacgattt acagattgtt tacgaagtta       180
     cgcggattta aatggggatg cgtcaaatct caamattttt tacaaacttt gcaaagctcc       240
     acgacgcgaa ataaaaattg cacgcaaatg cggtttacag cattcgaaag cgtggatctt       300
     tagctttaat ttgcgttttt gttgagcttt gtacgatttt ttttcactga gttaggcaac       360
     actgaagcaa aaatggcctc ttttgcttca atgttgaata attcagtgaa taaaaatcgt       420
     acaacgctca acaaaaacgc aaattaaagg taaagattca cgcttttgaa tgctgtaaac       480
     cgcatttttg tggaattttt atttcacgcc gtggagcttt gcaaagttcg taaaaaaatc       540
     cgacaaatgt caaaatctta taaaaatttt gccaagttgt acagcgtgaa ataaaaatcg       600
     cacacaaatg cagtttacag tatttgaaag cgtgaatctt tacctttaat ttgcgttttt       660
     gttgagcttt gtacgatttt ttttcactga gttattcagc actgaagcaa aaatggttcc       720
     tttcttcaat gttgaataaa tcggtgaata aaaatcgtac aacgctcaac aagtacgcaa       780
     attaaagata aagattcacg ctttcgaacg ctgcaaactg catttgtgtg caatttttaa       840
     ttcacgtcaa ataaactcgc aaaattcgta ataaattttg ccgcattttt atttttatcc       900
     gtatagctcc gtaaaaaatc agtatatgtt ttcaaagtcg atattaaaag tgtatgtaga       960
     aacattaagc tgtaaaatgc gttttgaaac atttgattta tcatttttgt tgatttatca      1020
     tgttacactt ttttggagag taactgtwgg tgatccttta attttgctgt tgaacgctca      1080
     cttaatcttt gctgaagtcg atatttgaac ttcgtgaaaa aaaaattata aaacgatctt      1140
     ccagggctca ttttaaaggg cgaaaccttt cgattattta agttgatttt tctcgaagat      1200
     tcttttacac taggaaataa agtaagaaat tcaagaaaga ttttaaaaaa tcaaaaattt      1260
     tccaaattta aacaaattta ggaagttgca aattttttgc catttaaatt agcatgaagt      1320
     cgaaagttga aaaacccttt aaaaagattt agtaattaaa aaataatcca cgatattttt      1380
     aatgttttat tgcattatga aaaatttttc attttgcaaa tttttgattt ttaaaaatct      1440
     ttcttgaatt tcttccttta tttcctagtg taaaagaatc ttcgagaaaa atcaacttaa      1500
     ataaaagaaa cctttaaatc attttaaagg ttttgccctt taaaatgagc cctggaagat      1560
     cgttttataa tttttttttt tacgaagttc aaatatcgac ttcagcaaag attaagtgag      1620
     cgttcaacag caaaattaaa ggatcaccac agttactctc caaaaaagag tgtaacatga      1680
     taaatcaaca aaaatgataa atcaaatgtt tcaaaacgca ttttacagct taatgtttct      1740
     acatacactt ttaatatcga ctttgaaaac atatactgat tttttacgga gctatacgga      1800
     taaaaataaa gatgcggcaa aatttattac gaattttgcg agtttatttg acgtgaatta      1860
     aaaatcgcac acaaatgcag tttacagcgt tcgaaagcgt gaatctttat ctttaatttg      1920
     cgtacttgtt gagcgttgta cgatttttat tcaccgattt attcaacatt gaagaaaaag      1980
     gaaccatttt tgcttcagtg ttgcataact cagtgaaaaa aaatcgtaca aagctcaaca      2040
     aaaacgcaaa ttaaagctaa agatccacgc tttcaaatgc tgtaaaccgc atttgcgtgc      2100
     aatttttatt ttgcgtcgtg gagctttgca aagtttgtaa aaaattttga gatttgacgc      2160
     atccccattt aaatccgcgt aacttcgtaa acaatctgta aatcgtttaa tgacttatca      2220
     atctcaaaac tagagatttc aagctttaaa atgctttttt aaattttttt acgattattt      2280
     ttgacaaagt tacactctct tgaattacgc ctatttttcg gagtcagaat aggtgatccc      2340
     ttaattttgc tgtcgagtg                                                   2359
//
ID   Mariner-N8B_LMi repbase;    DNA;    INV; 1603 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 20.01, Created)
DT   16-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1603
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 8-8 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1603 BP; 427 A; 331 C; 329 G; 516 T; 0 other;
     gagcgcgcgc cacataactt ggcgggtgag gtctggatgc gcagaagcac aggtaggcct        60
     acgtcacgtc acgtgacctg ctggccaata gccgtcagtc agccgttgcg cgcggtcgag       120
     ttcgtgtcgt actgtgcgga gcgacaactg gttttggcat tctgcgttgt gtttttttgc       180
     gagttatttc ggagcattca gttgactatg agtagcaaca gcaaatctcg acctgtatta       240
     cacaaacagg caagagaaat agtgtttcgc gtatatcaat tctttagacg ggagtcggaa       300
     gcggctgatc acaaagcctc tacttattac cacgttaaaa attattttgt ggcagttaag       360
     cttgtattgt gtaactttat actatgtgtg cttccctggc aaaggaactg taacacgatt       420
     tttgttctta cttatgctgt ttcgttgtgg attttgttta aagcttgtct tccggcttca       480
     acagctttga cgattttgtt atgaactcta ttaacgttga gtattatccg tttcctgact       540
     gtgcctcgac gatcgtcttt gcggtgtgta gcaagcaatc ctcattattt tattgttatt       600
     acaacctgaa ctttccactg taaaatatct ctttgtttta tttatgctag tgggacatct       660
     attttcactt ttgaaaaaat tgtacgaaaa tcgctagaca aaaatgtttt acaaaagctt       720
     ttattcatgg ccgatttcga cagttcttgg ttgccatcat ctgatcttta ttgcatggat       780
     ttcagtattt ttcatttacc tgtacagaat caattttaca aaaaataaat caggaaatgt       840
     gaaacacctt gctttgatca gtaagcactt gcttgatggg catcagtacg aagactgaac       900
     atgtgtcgct tgtaacgttt ttagatagtc tccttgtctt gtacaatgtc aaacatatac       960
     aattattcta tcatttcata tgatatgtca cttaagtcat tgatagacta ttttaataac      1020
     tgcttcgaaa aatccagatt tcgagataca attaagggaa aaatctaaaa tttgtcaatt      1080
     tctaatttat aactttttta tcttcacaaa tttactttga attcgtaatc tgtcgtgaac      1140
     gtctaatgtg gttcttcagt gataatggat agagtgatct ccctagaaga actgtgtata      1200
     taatttacag gtatttcgtg ttaatcgact gagctacgaa atgaatttct gtgccgctca      1260
     gaaaattatg ccctgccgtg taaacatgat aggtacaaga gaaagagact cataaatact      1320
     cgtaaatgcg ccacagtttt cccaacaatc aaacgagcgt tgtttttctg cattacactt      1380
     tttatgcagc cgtgtgtgtt caagactcgc agctcgacat ttccttgcgc ttgtatgcgg      1440
     ccgtaacttt aaacctaagc ggcagtcagc agctgactgc ggaatggaac ggagcgcagc      1500
     taacgcacag tccggctacg ctgcgacagc tggtcccccc accactacac agctacctgc      1560
     gcagaagagc cagtccaccc gccaagttac gtggcgcgcg ctc                        1603
//
ID   Mariner-N8_ACe repbase;    DNA;    INV; 80 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-80
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 531-531 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 80 BP; 31 A; 8 C; 12 G; 29 T; 0 other;
     ttaggtgtag taaaaagaaa tccattattt ttgcatgaaa ttgaatggaa aaataatgga        60
     tttcttttta ctacacctaa                                                    80
//
ID   Mariner-N8_DTa repbase;    DNA;    INV; 1473 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1473
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6158-6158 (2021).
XX
DR   [1] (Consensus)
XX
CC   99% identical to the consensus.
XX
SQ   Sequence 1473 BP; 472 A; 252 C; 263 G; 486 T; 0 other;
     cacttgccag aaaaagtatg cgtacaaata ttttccgcaa ctttagagct taaaaaaacg        60
     tcttaaaaaa attcgtaaaa atgtcatttt aattttaaca tttagtacac atattaagct       120
     ttaatttgac gtaacttatt aatttctagc acctttactt ttcctaatat aaataaaaat       180
     gtacaaattg gccggatttc gcatcagaaa aagtatgcgt acaaatgcat atggtattag       240
     aaaaagccat attttgggca aagtacgtcg agtttagtac ggagtttgat accctttatg       300
     ttttataact tcagtctaca tattcgtcat cgattggacc aatgtccttg catccatcgc       360
     cgttatttga ttccattcct cgacattgag ttttttcagg atatccttgg atgcaagggt       420
     gtgaaggcga gtcctgccct ccaggacatc acaaaaatgc tttacgggat tgatatatac       480
     tattttgatg gcgaatgtag ctgttttaca cataaaagct ttgttttgtg ggcgcaatgt       540
     ttaggttcgt tgtcctcttg gtaccaaaag tccttttcga gtcccacttt caggacgctt       600
     taatttcttg tcttaaagtg cataaaacaa ccaacaaaat gaggtatcgt ttattaaaat       660
     cggtcaacaa cttaacgaga aatgggtata aaaactttct tatttagata gaaggttagt       720
     tttttttgaa attcgtatga aattcgtgca ttacgccaaa gcagttgttt gtttggttat       780
     atggctagcc atttctcgtt aagttgttga ccgattttaa taaacgatac ctcattttgt       840
     tggttgtttt atgcacttta agacaagaaa ttaaagcgtc ctgaaagtgg gactcgaaaa       900
     ggacttttgg taccaagagg acaacgaacc taaacattgc gcccacaaaa caaagctttt       960
     atgtgtaaaa cagctacatt cgccatcaaa atagtatata tcaatcccgt aaagcatttt      1020
     tgtgatgtcc tggagggcag gactcgcctt cacacccttg catccaagga tatcctgaaa      1080
     aaactcaatg tcgaggaatg gaatcaaata acggcgatgg atgcaaggac attggtccaa      1140
     tcgatgacga atatgtagac tgaagttata aaacataaag ggtatcaaac tccgtactaa      1200
     actcgacgta ctttgcccaa aatatggctt tttctaatac catatgcatt tgtacgcata      1260
     ctttttctga tgcgaaatcc ggccaatttg tacattttta tttatattag gaaaagtaaa      1320
     ggtgctagaa attaataagt tacgtcaaat taaagcttaa tatgtgtact aaatgttaaa      1380
     attaaaatga catttttacg aattttttta agacgttttt ttaagctcta aagttgcgga      1440
     aaatatttgt acgcatactt tttctggcaa gtg                                   1473
//
ID   Mariner-N8_HSal repbase;    DNA;    INV; 870 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-870
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 962-962 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 870 BP; 319 A; 117 C; 115 G; 319 T; 0 other;
     cagggtgcta aatttcaaac gtaacaggta aaaaatctcg aaaactatga aagatattaa        60
     aaaaagctaa aacacgtgtt ccatgatttc gaaggggaaa gagaatggca ttatcagttt       120
     tttatttgga gggcattttc aaggtcagtt gaaggtcaac ttaatttttt aaaatagaaa       180
     gcccaatttt ttattatatc ttctttttct accaattaat tttaacaact tttgtctgaa       240
     acattttttt atttgcctaa tattttttga aatatttaag gaaaacttgg taactttttc       300
     aacatttaac ttacgatatc tcgctaacta ttcgtcgaaa gaaaaaatag tattagactt       360
     ttttacttta tttactatca agaatatatt actataatag tgccctaact tttgttaact       420
     tatcgacctt tggaaatttc aaaattatta aattaacaaa agttagggca ctattatagt       480
     aatatattct tgatagtaaa taaagtaaaa aagtctaata ctattttttc tttcgacgaa       540
     tagttagcga gatatcgtaa gttaaatgtt gaaaaagtta ccaagttttc cttaaatatt       600
     tcaaaaaata ttaggcaaat aaaaaaatgt ttcagacaaa agttgttaaa attaattggt       660
     agaaaaagaa gatataataa aaaattgggc tttctatttt aaaaaattaa gttgaccttc       720
     aactgacctt gaaaatgccc tccaaataaa aaactgataa tgccattctc tttccccttc       780
     gaaatcatgg aacacgtgtt ttagcttttt ttaatatctt tcatagtttt cgagattttt       840
     tacctgttac gtttgaaatt tagcaccctg                                        870
//
ID   Mariner-N8_LMi repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 20.01, Created)
DT   02-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 85-85 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1312 BP; 381 A; 294 C; 279 G; 358 T; 0 other;
     gagcgcgcgc cacgtaactt ggcgggtgag gtctggatgc gcagaagcac gggtaggcct        60
     acgtcacgcc acgtgacctg ctggccaata gccgtcagtc agccgttgcg cgcgctcgag       120
     ttcgtgtcgt actgtgcgga gcgacaactg gttttggcag aaacaggatt catacctgaa       180
     agtaaattaa tatttaagtc atcaaagacg aagcattcag aagactacca ttctgaaatg       240
     acttacgcag tcttcagtca gtggtttaca agtcaactgc ttccatacct ggccgagaat       300
     tctgttatcg ttatggacaa tgcaagtgtg cactctgtgc aagtgaacag agctcctact       360
     tcaaatacca gaaaggacga aattatttcg tggctaacat ctaatggaat tcctcacagt       420
     gcgtcacaaa ccagggcaga attgctcatg cttgtaaatg catacaagcc caaataccgc       480
     acttacgcga tagatgaact tgcaagacag cacggtcacc gggtagtaat aaatcacgaa       540
     atgtgaaaca cgttgctttg atcagtaagc acttgcttga tgggcatcag tctacgaaga       600
     ctgaacatgt gtcgcttgta acgtttttag atagtctcct tgtcttgtac aatgccaaac       660
     atatacaatt attctatcat tccatgtgat atgtcactta agtcattgat aaagtatttt       720
     aataactgct tcgaaaaatc cagatttcaa gatataatta agggaaaaat ctaaaatttg       780
     tcaatttcta atttatcact tttttatctt cacaattaat ttactttgaa ttcgtaatct       840
     gtcgtgaacg tctaatgtgg tttttcagta ataatggata gattgatgtc cctagaagaa       900
     ctgtgtatat aatttacaga tatttcgtgt taatcgactg agctacgaaa tgaatttctg       960
     tgccgctcag aaaattatgc cctgccgtgt aaacatgata ggtacaagag aaagagactc      1020
     ataaatactc gtaaatgcgc cacagttttc ccaacaatca aacgagcgtt gtttttctgc      1080
     attacacttt ttatacagcc gtgtgtgttc aagactcgca gcttgacatt tccttgcgct      1140
     tgtatgcggc cgtaacttta aagctaagcg gcagtcagca gctgactgcg gaatggaacg      1200
     gagcgcagct aacgcacagt ccggctacgc tgcaacagca gctcccccca ccactacaca      1260
     gctacctgcg cagaagagcc agtccacccg ccaagttatg tggcgcgcgc tc              1312
//
ID   Mariner-N8_PBa repbase;    DNA;    INV; 1392 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1392
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 634-634 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus. The 3'-end is not determined.
XX
SQ   Sequence 1392 BP; 489 A; 191 C; 187 G; 524 T; 1 other;
     cttacaaggg aacacaacca agtgttctcc ccccctccga ttttaatgaa cttcgaatat        60
     gttaaaatat agacaaaaat aagagacacg tattttttta taagtgctga gctgcatgtt       120
     aagggggtga aactcccctt taaaaaaaat cggttttttt ctttcaaagc gaatatcgtc       180
     aaaactataa cagatagaaa aaaaagtttt atacaaaagt taaatcgttt caaaagtact       240
     ttataaagga aataaaaaag atttttttta acttttttta agtttccccc accactccat       300
     atctatatct ttaattttga aattttttaa tgaccaaatt aaaggttatt tttatacgaa       360
     ttcaaccata tatgataaac ttattttccg agatatcatt tttgaaaaat aattataaat       420
     ccctacgtat acacgctatc cgtccgtgcg ctcgattctt cacgctgaac ggattcgtct       480
     catattgcgc tgactacgcg agagagcaag tcagtacagt atattgaata ctttgaaata       540
     cgagttttat aataacaata ataataatag taataataac agtgagttta ttaaaccgtt       600
     aaaatcagtc aaatattttt gacgatatgt caaagtatgt actgaatact ttggacaatt       660
     aaaaacaaat tatgattaaa aaattgcatt tacaaaatat cgttcattca actttgatta       720
     tagagcagct aattgcaatg atcaatgtat tttattgagt accaagatat attcgtgtcg       780
     cataatttta ttgtcataat cttgtcgcaa cactgtgagg gaatttgctg acgcatagtt       840
     tcgtctatta cattggttgc gtttcaatat tcactgataa tgctgaaaat ttatatatat       900
     atgacacgaa ttatattttc agtactggca gtaaacaccg gaacgcagct attattaaca       960
     caatgatata aaaaggcgca gattgttaca gcgaattcgc agttcgatac tgacattcgt      1020
     tctattacat tctattgtta ataagtactt atcagttgtg aataatataa ggttgaataa      1080
     atatctattc ttgaaatttt tattgttatt tatattttta tattttttta tttttatatt      1140
     tagtttttta cattggaatt gttgatttta tttgttttat ttaattatta ggtttgataa      1200
     aacaaacaat ctattaattc tgatcgcatt tgtaaaatat ttgcagatag taaaatgttg      1260
     tttgtatatt gtatatacaa tattacatcc tttttctttg ttcaacggat ttccttcaag      1320
     gataactgtt tcaaaagtat taaatttatt aaatttatta taaatttacw ataaattaga      1380
     taatagaaaa tt                                                          1392
//
ID   Mariner-N8_RPr repbase;    DNA;    INV; 1291 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1291
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3288-3288 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 1291 BP; 430 A; 243 C; 236 G; 382 T; 0 other;
     atgggttggc aactaagtca ttgcggattt tgtcaataga tggttttagc acattctttt        60
     gctttgttta cgtgatcaaa gcatctaagc tggattgttt tcttgttgtt aggactttcg       120
     cctttaattt agtaaaaaaa aatttatcga taagtcattt agtttccttt ttatccaatt       180
     taaaaatgga agaacaagac gcgcatttca gacaaatttt attatattat ttccgaaaag       240
     gccagaacgc atcgcaagca cataagacgt tatgtgccgt atatgggcat gaagccttga       300
     aagaaaggca gtgtcaaaat tggtttgcct aatttctttc tggtgatttt tcactgaaaa       360
     atgcgcaacg atctggctgt ccagttgaag ttgatgagac ccatatcaag actatttttg       420
     attcagatcg tcatagcaca actcgtgaga ttgcagagaa gctcaatgta tcgcgtacat       480
     gcattaaaaa aaaaaaaatt aaaaccactt ggctacgtca agaaacacga tttatggatc       540
     cctcatcagc ttaaggaaat tcatttgacg caacgcatta gcgtctgcga ttcgcttctg       600
     aaacacaacg aaattgatcc atttccgaaa cgactgatta ctagcgacga aaagagatta       660
     gtttacaaca aggttaatcc gaaaaggtcg tgcatgatgc aaaatgaacc agcccagacg       720
     tcaccaaaag ctgagattca acaaaaaaag attatgctgt cagtttgttg agattataaa       780
     ggaattctgc actttgaact tttaccaaga aaccaaacga ttaattcaag cgtctacgtt       840
     gaacaactcg ccaaactgag cgatgaagtt caagaaaagc ggccagaatt ggcaaaccgt       900
     aagggtgttg ttttccagca tgataacgca aagccccaca catctttggt cacccaccaa       960
     agattattgg aactaggttg ggatgtgttg tcacatccac catatagccc agaccttgcg      1020
     ccttcagatt accatttatt tcgttccatg cagatctcct taaatcgtaa aatttttaat      1080
     gatgctgatg atgtaaaatc acaattaatt cgttttttgc tggcaaaaat cagaagtttt      1140
     ctgaacatgg aattatgaca ctgcctgaaa tatggcaaaa ggtcatcgac aaaaacgaaa      1200
     aatgcttaat tgaataaagt tatattttta agcaaaaatt ttgaattttc cttcttattt      1260
     aaaatccgca atcacttagt tgccaaccca a                                     1291
//
ID   Mariner-N8_SIn repbase;    DNA;    INV; 1634 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N8_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1634
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 410-410 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1634 BP; 553 A; 275 C; 264 G; 542 T; 0 other;
     cactactcaa aaaaaaatag ggaacacttt ccagacacca aaaattaggc tatttttaaa        60
     tggctgtaac tcggcgaaaa atcatcgtag ataaaaaata aaaaagcatt ttgaagcttg       120
     aagtttcaac tttaacgctg tatcaacaga ttttcaaagt tcttttaact tccttgtctt       180
     atgcagtaaa aaagcacacc ttgttttgtt ccttaaaatt tcgtattttt gacactttgc       240
     agctcgacaa acgaattttt ttcgaacaat tcaagtaaag cttcataaac tacaacattt       300
     tgcctacaaa atgctttttt ttaatttctc tacgattttt tttgaccgag ttacgcaact       360
     ttgaagctaa acctgcattt tttacaaatg atgtccgtac tccgtgaaaa atcatcgtag       420
     acaaaaaatg aaaaaagcat tttaaagctc gaagtttcag ctttaacatg ctatcaatgg       480
     ttttcaaaaa ttttttcaat ttctcagtgc tatgccccaa aaagatacac tgttttttcc       540
     ttaaaattac gtatttttga cagcctgtag ctcaataaaa aaattttttc tcgacaaatg       600
     caatgcaagt accataaagt atgacatttt ctctacaaaa tgcttttttt taaattttcc       660
     taattttttt tgaccgagtt acaagacttc gaagaaacac attttttaca gtacattttt       720
     ccgaaaaatg acgtttaccg ccgacattag cattacacaa tattcaccac gcacacgctg       780
     cgttggacac gcacacacgc acgcacacgc gcacgcacgc gcgcgcgcac gatgtgcaaa       840
     aatccgaccg gcaacctcta cgtggtgcac attgtgtaat gctaatgtcg gcggtaaacg       900
     tcatttttcg gaaaaatgta ctgtaaaaaa tgtgtttctt cgaagtcttg taactcggta       960
     aaaaaaaatt gtaggaaaat taaaaaaaag cattttgtag agaaaatgtc atactttatg      1020
     gcacttgcat tgcatttgtc gagaaaaaat ttttttattg agctacaggc tgtcaaaaat      1080
     acgtaatttt aaggaaaaaa cagtgtatct tttttggggc atagcactaa gaaattgaga      1140
     aaatttttga aaaccattga tagcatgtta aagctgaaac ttcgagcttt aaaatgcttt      1200
     tttatttttt gtctacgatg atttttcacg gagtacggat atcatttgta aaaaatgcag      1260
     gtttagcttc aaagttgcgt aactcggtca aaaaaaatcg tagaaaaatt ttaaaaaaag      1320
     cattttgtag gcaaaatgtt gtagtttatg aagctttact tgaattgttc gaaaaaaatt      1380
     cgtttgtcga gctgcaaagt gtcaaagata cgaaatttta aggaacaaaa caaggtgtgc      1440
     ttttttactg cataagacaa ggaagttaaa agaactttaa aaatctgttg atagagcgtt      1500
     aaagttgaaa cttcaagctt caaaatgctt ttttttattt tttatctacg atgatttttc      1560
     gccgagttac agccatttga aaatagccta atttttggtg tctggaaagt gttccctatt      1620
     ttttttgagt agtg                                                        1634
//
ID   Mariner-N9B_RPr repbase;    DNA;    INV; 902 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-902
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3289-3289 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 902 BP; 270 A; 189 C; 206 G; 237 T; 0 other;
     cgaggtgtgg ctattaaata acgagactga tgctgctaca gaagaactat gcatgcgcca        60
     aatcctaacg accgacagct gtgcagcgta aagccttctc tttcgattgc agcgtctcac       120
     gtgtttgtag agaaatctgt ctgaccggaa ccgtcgtttg tgtaagaggt gttagtttcg       180
     ttttgccgaa aacatgatac tacacatgta gtagagcaac gaattgtcgt gaaatttcac       240
     atgaaacttg gtaaaaccgc tactgaaact tatcttttat taaaagaagt ttatggcgat       300
     gaatgtttat cacgtgcgcg agtttttgag tggttcaagc gtttccaaga tggccgagaa       360
     gacgtcggag atgatgaccg cccgggtcgc ccttccacgt ccaaaacgga tgaaaatatc       420
     gattataatt aatcaacatt actaccgtga ggtgcttgct caactccgtg aaagagtaag       480
     gaaaaaaacg acccgatttg tggaagaaca agtcacgggg ttctccatca agacaacgcg       540
     ccggctcaca ctgcattgtc tgtcaagacg tttctagcca agtacaacat cccagtttta       600
     ggccatccgc cttattcgcc tgacctggcc ccatgtgact tttatctgtt ccccaaagtc       660
     aaatctgcat taaaaggaac acgatttcag tccgttgaag ctgtgaaaga aaaagcggca       720
     cgcgtcatgc aggagctcac agaaaaagac ttccagcact gtttcgaaca atggtaaatt       780
     cgcatggagc gttgtaggga taggggaggg gtgtatattg aaggtgataa taactaaata       840
     tgtataaatt taaaataaaa tgttttacag caatagtctc gttatttaat agccacacct       900
     cg                                                                      902
//
ID   Mariner-N9B_SIn repbase;    DNA;    INV; 1018 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9B_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-1018
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 411-411 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1018 BP; 339 A; 208 C; 169 G; 302 T; 0 other;
     ggggagaccg gggctattcg ttagaccttt ttttcttttg tgtctcctga gtcctatatt        60
     cattaaaaaa aaaagaaaca tgggacggtt tgaaaggttg aaccttcccc ttcacaatgc       120
     cggtatagat agaacatgga agtgtacttg ctttgaagta catataaaaa tgtcgaccaa       180
     tgccaagaat tacgaatagc cccaagcccg gggtaattcg taactagtcc gggaatatcc       240
     cgaaatttgt gtttcaagtt gaaagactgt aaaaaagctg ttgttaagac tttcttttat       300
     ttaaaaaagg atataggtat acaaaaaaca aatgcaaaca tacacgttcg catgtccttt       360
     tatgccatcg gtgtgacaga tttcctaacc tcacaagtgt caatctttaa cgctttataa       420
     ctttttacct gcttaagagc gacgatttta tattcatatt catgttctat gtactaaaat       480
     acacaatatt atcaagtttg aactaaatca atgaagaact ttacctcaat gcttaactct       540
     gcgtagcgca gacgttcgta acacagccaa agggttaggg ttacccaact taggttaggc       600
     gctgcaatca gtattaacga atcgccccgg tgctcggtat tacgaatagc cccaacatca       660
     actgtgcgca ttattgcgta tgatcgacaa aaatagacat cacacagcaa aaagtaaaca       720
     cgaaatgttt caaatacatt caactggaca cgatacattc aaagttttca aaaaaaacct       780
     tattatctta tttaaatttc gaagaaatgc tgactatcag aaattacttc gactgtcgca       840
     aaacacattt ttcactacta cgacttcaat atgacgccgt taccaacaaa actttgttag       900
     caacatcgtt acattaggac gtgtttacag tgtttaaagt aaatttttaa tatgtaccca       960
     taaaaagata tttccaatta tcgaattacc ccgtctaacg atttgccccg gtctcccc        1018
//
ID   Mariner-N9_ACe repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   29-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Mariner DNA transposons from Atta cephalotes, consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-567
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 532-532 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to the consensus.
XX
SQ   Sequence 567 BP; 187 A; 93 C; 82 G; 205 T; 0 other;
     cagggaatag acaaaataat atgaatacct gggaaatact tctatttatt ttactacttg        60
     ttttattaat aagaggttgg cccatcattt gcttttaata cacattctat ccttgttgga       120
     ataatcacac aatgcttgaa tagtttgaat accaatggaa tgttgtacta ttcttttagt       180
     agaaacatct ttcaattgct tatataaatg atattggagg aggaaatttt cttctcactc       240
     tattttccaa aattgtcctc tgttctccaa aacttcaaca tctttcctgg ccaatgcaat       300
     cgcctgattt aaatatcatt tgtagttttg aagagcagaa tgagaaacag atttccttct       360
     ccaatatctt ttaagcaatt agaagatgtt ctgctagaag aatggtataa tattgcactg       420
     tagcagttgc tacactattc aagcatgtat gacctattcc aacaaggata gaatctgtat       480
     taaaaagaaa atagtaacca atttcttatt aataaaacaa atagtagtat atttctcagg       540
     tgttcacatt attttgtcta ttccctg                                           567
//
ID   Mariner-N9_DTa repbase;    DNA;    INV; 1502 BP.
XX
AC   .
XX
DT   02-AUG-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1502
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6159-6159 (2021).
XX
DR   [1] (Consensus)
XX
CC   98% identical to the consensus.
XX
SQ   Sequence 1502 BP; 523 A; 235 C; 223 G; 521 T; 0 other;
     cactactggt caaaagaata agtacacacg ttacaccctc acttgctaag agatatctct        60
     atagttattg aggccagacc tcccaaacct ttttatttgg aaaggttatt ctgttctgca       120
     atatttaaat aaacaatgga tacagtaaaa cctgcctaat ccatgttagc cctacatttg       180
     tgcgataggt cggttttggt gtggtcaaaa taataagtac acttgtgtta cttataaatt       240
     ttaaaatatt aaatctagaa tggggctacg gttagtattt tatcttaagt taggatcatg       300
     tttataagaa gtctgggcca attggacgat ccaaaaagtt tccaagcctg gatttggtta       360
     tttcaaagtc atcatccatg ctaaaatctg atttgcagct taaaaggaac acttaacact       420
     taagtatggc ttgtgattcc ctaaaatttc cttaaaaata ctactctgaa taaataaaat       480
     cgatttagaa aaaaatgagt acttacaccg taaaaaataa ggaaaaaggg gaaataaata       540
     agaaaaaacc aaagttacat gcggttttaa ttaaaaaaaa aatagttaaa ttttaaattc       600
     ttaatttttt tatttttatt ttgatagtag ataaaacgac taaaaaaatg agatatgttt       660
     cattaagatc ggtaaacaac ttaaaccgta ctacatgaat cgcacaacgc tagatatcta       720
     tacataaata caaattcccc gtccatacaa gtttgtatga aattcgtttt taacgatata       780
     gcagttttgt tatcgtgcac atcgtcaaca gccatttaat aatttgttga ccgatcttta       840
     tgaaacatat ctcatttttt tagtcgtttt atctactatc aaaataaaaa taaaaaaatt       900
     aagaatttaa aatttaacta tttttttttt aattaaaacc gcatgtaact ttggtttttt       960
     cttatttatt tccccttttt ccttattttt tacggtgtaa gtactcattt ttttctaaat      1020
     cgattttatt tattcagagt agtattttta aggaaatttt agggaatcac aagccatact      1080
     taagtgttaa gtgttccttt taagctgcaa atcagatttt agcatggatg atgactttga      1140
     aataaccaaa tccaggcttg gaaacttttt ggatcgtcca attggcccag acttcttata      1200
     aacatgatcc taacttaaga taaaatacta accgtagccc cattctagat ttaatatttt      1260
     aaaatttata agtaacacaa gtgtacttat tattttgacc acaccaaaac cgacctatcg      1320
     cacaaatgta gggctaacat ggattaggca ggttttactg tatccattgt ttatttaaat      1380
     attgcagaac agaataacct ttccaaataa aaaggtttgg gaggtctggc ctcaataact      1440
     atagagatat ctcttagcaa gtgagggtgt aacgtgtgta cttattcttt tgaccagtag      1500
     tg                                                                     1502
//
ID   Mariner-N9_HSal repbase;    DNA;    INV; 1226 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1226
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 963-963 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1226 BP; 401 A; 219 C; 222 G; 384 T; 0 other;
     cagggtggcc cacataactc ttaacagctg aatatttcgg aaactatttg tcaaatcaaa        60
     aagttgttca tgagaaagtt ttatgtattc gaggggcctt tctaactaca taaatattaa       120
     gttactccct gcccccctta aaggggggca gggggtaact tcgcaatttc aaacgggacc       180
     ccctataaaa tgttagatgg ttgggttcta cggtaaaaaa acaagtacat tttgttcaaa       240
     acattttttt gtcagatgtt tctgttaaaa gatatgacgg tgtaaagttt cgaagctaca       300
     ggaaacgtaa aagcgtcgcg tatccttgtc tttcgtcggt gattcaaacg taaacaaaca       360
     ttcatacatt cattgaggtc aatttaacta ttcatgaaaa tcttgtcagt tgtatgttac       420
     tattcaaaaa gttagcaccg tgaaaatcat agctatcact atgtttgata cagaagtgaa       480
     tatgttatta gtattaggtg aatgccaaaa gaattatcgg cgtgcagcag taatgttttt       540
     tgaacgttat gggattaaaa aatcgcacgt gtcatttttt aatgtagaaa agcggcttcg       600
     tgaacatggt aaattgcgta caacacacaa taaaaaaaag tgacattaaa aaatgacacg       660
     tgcgattttt taatcccata acgttcaaaa aacattactg ctgcacgccg ataattcttt       720
     tggcattcac ctaatactaa taacatattc acttctgtat caaacatagt gatagctatg       780
     attttcacgg tgctaacttt ttgaatagta acatacaact gacaagattt tcatgaatag       840
     ttaaattgac ctcaatgaat gtatgaatgt ttgtttacgt ttgaatcacc gacgaaagac       900
     aaggatacgc gacgctttta cgtttcctgt agcttcgaaa ctttacaccg tcatatcttt       960
     taacagaaac atctgacaaa aaaatgtttt gaacaaaatg tacttgtttt ttaccgtaga      1020
     acccaaccat ctaacatttt atagggggtc ccgtttgaaa ttgcgaagtt accccctgcc      1080
     cccctttaag gggggcaggg agtaacttaa tatttatgta gttagaaagg cccctcgaat      1140
     acataaaact ttctcatgaa caactttttg atttgacaaa tagtttccga aatattcagc      1200
     tgttaagagt tatgtgggcc accctg                                           1226
//
ID   Mariner-N9_LMi repbase;    DNA;    INV; 1254 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1254
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 86-86 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1254 BP; 358 A; 232 C; 288 G; 376 T; 0 other;
     tatacccggg ccgctgaaac tttgcacttg acgtttacaa ataacaagtg aagagcaaga        60
     agcgcgaggc gctagtcgct aggaacgatc caatcacagc gcgataaaca cttccagtga       120
     tcacgtgccg tgacgtcaac gttcccgcgt tgccggcttt gttcagttct accgtaaaca       180
     aagttgtgta tcgtgtttat cgcgtgttta tgttgtgtgt gcttttttcg ctgcgatttg       240
     ttttactgtg agtggtttaa cttgactttc cgagttcaag taattggata atgtcaccga       300
     aaagacgttt gtctagtgac gttttctgag taagttctca atttcgtatg aataaaaact       360
     tcgaagctta tgctctgagc aggaagttca ttctcgcttc aaacgatcgg aaagaagtta       420
     tggtgcagtg gttacaagaa agaaatattg ctgcagatat gtcaatgtca aaacttcttt       480
     tatattcgct cgtgaaacaa aataagccta ttacacccac atatgcagta gacgaaatcg       540
     caaaggagca gcgtcacaat gtaataaatc tgcccccatt tcactgccgt tttaacccta       600
     taaaattggt atggagtgac gtgaagaatt acttaaggaa caataagtct ttcacaataa       660
     cagaggtgga aaagctgttg catgaagctg ttgccaatgt ggatgctgca tcttggaaaa       720
     aaaagggtcg agcacgttga aaaactgatt cgggcagcgc aaacaatgga agggatcatc       780
     agtaatcatg aacggttaat gatttgtctt ggtgatgacg acgattttgg cagtgacgac       840
     aacagtgaag atggggagct ggatgtaatt gtaccattgt cgccgtaaat tggtgagtga       900
     aaagcattct gattataaaa cgtagagaga gaagttacta tcttgattat tgtttatttc       960
     gtatctgtcg tgatccaatg cttattttct atattgcttt gctccgttat tgaaagcgtg      1020
     tgcattgttg tgctctggtc ttcattaata tgccgttaat taattgctgc tcaagaacga      1080
     attattatat gcacttttat tgctcaatag cttacattta cgagatgcaa ctgaaaaccg      1140
     tttcgtctgc tgtgcgtata gaggctagtg ttgcaacgtc gctaaagcag tgtagccaac      1200
     ttaactcgcc gtaacgcgaa acgtcaagtg caatgtttca gcggcccggg tata            1254
//
ID   Mariner-N9_RPr repbase;    DNA;    INV; 703 BP.
XX
AC   .
XX
DT   23-JUL-2012 (Rel. 20.10, Created)
DT   23-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Mariner DNA transposons: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-703
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3290-3290 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus.
XX
SQ   Sequence 703 BP; 210 A; 148 C; 155 G; 190 T; 0 other;
     cgaggtgtgg ctattaaata acgagactga tgctgctaca gaagaactat gcatgcgcca        60
     aatcctaacg accgacagct gtgcagcgta aagccttctc tttcgattgc agcgtctcac       120
     gtgtttgtag agaaatctgt ctgaccggaa ccgtcgtttg tgtaagaggt gttagtttcg       180
     ttttgccgaa aacatgatac tacacatgta gtagagcaac gaattgtcgt gaaatttcac       240
     atgaaactcg gtaaaaccgc tactgaaact tatcttttat taaaagaagt ttatggcgat       300
     gaatgtaatc acgtgcacgg gttctccatc aagacaacgc gccggctcac actgcattgt       360
     ctgtcaagac gtttctagcc aagtacaaca tcccagtttt aggccatccg ccttattcgc       420
     ctgacctggc cccatgtgac ttttatctgt tccccaaagt caaatctgca ttaaaaggaa       480
     cacgatttca gtccgttgaa gctgtgaaag aaaaagcggc acgcgtcatg caggagctca       540
     cagaaaaaga cttccagcac tgtttcgaac aatggtaaat tcgcatggag cgttgtaggg       600
     ataggggagg ggtgtatatt gaaggtgata ataactaaat atgtataaat ttaaaataaa       660
     atgttttaca gcaatagtct cgttatttaa tagccacacc tcg                         703
//
ID   Mariner-N9_SIn repbase;    DNA;    INV; 893 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   30-APR-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Solenopsis invicta genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner-N9_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-893
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 412-412 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 893 BP; 312 A; 161 C; 151 G; 269 T; 0 other;
     ggggagaccg gggcaattcg gaagactttt tttcttttgc gtctcctgag tcctatattc        60
     attaaaaaaa aagttggacg gtttgaaagg ttgaaccttc cccttcacaa tgccattata       120
     gatagaacac ggaaatgtac ttgctttgaa gtacatataa aaatgtcgac caatgccaaa       180
     tatttcgaat agccccgagc ccggggtaat tcgaagctag tccgaaaata ttctgaaatt       240
     tatgttttaa gatgaaaaaa atgtaaaaaa gctattgtta agactttgtt ttattcagaa       300
     aaggatatat agtattatga agaaatgtta catacaataa aagaatacaa acgcacaata       360
     aagaatttta ttgctttagc gttttcggaa caagtcaggg actattcgta tttcgtgtaa       420
     ttacatctgt tgagtattaa attgtgtatt tggtacatag aacgcaaata tgaaagaaaa       480
     aaatcgtccg aacgacgatt cgacgtttgg tgtttcgaat agcccagaca tcaactgtgc       540
     gcattattgc gtatgatcga caaaaaatag acatcacaca gcaaaaagta aacacgaaat       600
     gtttcaaata cattcaactg gacacgatac attcaaagtt ttcaaaaaga atcttattta       660
     tcttacttaa atttcgaaga aatgctgact atcagaaatt acttcgactg tcgcaaaaca       720
     catttttcac tactacgact tcaatatgac gccgttacca acaaaacttt gttagcagca       780
     tcgttacatt aggacgcgtt tacagtattt aaagtaaatt tttaatatgt acccataaaa       840
     agatatttcc atttttcgaa ttgccccgtc tcccgaattg ccccggtctc ccc              893
//
ID   Mariner1_AG repbase;    DNA;    INV; 943 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Mariner DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-943
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 645-645 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           141..821
FT                 /product="Mariner1_AG_1p"
FT                 /translation="MPKKSTLWKRITCIMMIRAGRDNRDIMQCVQCSLNTV
FT                 KAIRSELGENSDDDEAVAARKPHSQRRDCVRTDAFLADLQARVMENPGIGI
FT                 RPLAREMGVADEYISMLDTVVKPWITRVANGRPYVFQQDSAPYHTASKTIK
FT                 WLAANFNDFTAPNVWPPSSPDLNPMDYFVWGAVERDTNRTSSNTKAELMAK
FT                 IRSVFAALPRETVARACSRFRRRVEAVIEAEGGYFE*"
XX
SQ   Sequence 943 BP; 257 A; 229 C; 259 G; 198 T; 0 other;
     tacagggcgt tcgggataat tttgacagtt acatttttgt ttataactcg tgatcgagtt        60
     ggcataggaa aacaagcaat acgtcattcg acagctaaaa gtgtacggaa caagcagcga       120
     aaacatcccg tgataaaaaa atgccaaaaa agagtacatt gtggaagcgg atcacatgca       180
     tcatgatgat ccgcgccgga cgcgacaacc gcgacatcat gcagtgcgtg cagtgttcgc       240
     tgaacacggt gaaggcgatc cggagtgagc tgggagaaaa cagcgacgac gacgaagcgg       300
     tggcagcacg aaaaccacat tctcagcggc gggattgcgt gcggaccgac gctttcctgg       360
     ctgacctcca ggcgcgcgtg atggaaaatc cggggatcgg aattcggccg ttggcacgtg       420
     agatgggggt ggcggacgag tacatttcca tgctggacac cgtcgtgaag ccttggatca       480
     cgagagtggc caacggcaga ccgtacgtgt tccagcagga ttccgctccg taccatacag       540
     cctccaaaac gataaagtgg ttggcggcca atttcaacga cttcaccgcg ccgaatgtgt       600
     ggcctcccag ctccccggat cttaatccaa tggattattt cgtgtggggc gcggtggaac       660
     gggacaccaa cagaacctcc agcaacacca aggcggagct gatggcgaaa atcaggtccg       720
     ttttcgcggc cctaccccgc gaaactgtcg ccagggcttg ttcccggttc cggagacggg       780
     tggaggccgt aatagaagcc gagggcggat attttgaata aaatgaataa aatacatggt       840
     aagctactat ttctaaaaca aaaaaaaatt ccccgatgat taattttgcc ataatttttt       900
     tttctccgta ggtgactgtc aaaattatcc cgaacgccct gta                         943
//
ID   Mariner1_DYa repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   02-JAN-2009 (Rel. 14.02, Created)
DT   02-JAN-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Mariner/Tc1-type sequence: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1299
RA   Jurka J.;
RT   "Mariner-type families from fruit fly.";
RL   Repbase Reports 9(2), 477-477 (2009).
XX
DR   [1] (Consensus)
XX
CC   Individual copies are 99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..1232
FT                 /product="Mariner1_DYa_1p"
FT                 /translation="MEKSEFRVLIKHYFLRKKSITETKERLDKYYGDSAPS
FT                 ISMVKKWFTEFRCGRTSTSDAERSGRPKEVVMPEIVDKIHGMILDDRRMKV
FT                 REVAEAVGISTERVHHILHEYLDMKKLSARWVPRLLTHDHKRNRVTISKEC
FT                 LAMFNRNPNEFLRRFVTVDETWIHHTTPETKEQSRQWVSPGERAPKKAKVG
FT                 LSANKVMATVFWDAQGIIHIDYLEKGKTITGEYYSELLDRFDIDLKQKRPH
FT                 LAKKKVLFHQDNARVHTCVVSMAKFHKLGYELLPHPAYSPDLAPCDYFLFP
FT                 NMKKWLGGKRFGSNEEVITETNDYFEGLEKTYYLEGIKKLEKRWTKCIELK
FT                 GDYVEK*"
XX
SQ   Sequence 1299 BP; 413 A; 255 C; 295 G; 336 T; 0 other;
     tacgagggtc gtttgataag tccgtgactt tttgtatttg ccgcgcacct gctctaaata        60
     caacactgct cctgtcagca gttatcgatt aacagctgac tgtaaaattt tgagaaagct       120
     gcgttttttg gtttgcgttt tataggcatt gaaagcagac gatctcgtga attttaacga       180
     aaatggaaaa aagtgaattt cgtgtgctaa ttaagcatta ttttttgcgt aaaaaatcca       240
     tcaccgaaac caaggaaaga cttgataaat attatgggga ctctgcacca tcaatttcaa       300
     tggttaagaa atggtttact gagttccgtt gtggtcgtac cagtacaagt gatgccgaac       360
     gttcaggtcg cccaaaagag gtcgtcatgc cagaaatcgt cgacaaaatc catggaatga       420
     tattggatga tcggagaatg aaagtgcgtg aggtagctga ggctgtaggc atctcaactg       480
     aacgggtaca tcacatttta catgaatatt tggacatgaa aaagctttcc gcgcgatggg       540
     tgccgcgatt gctcacacac gaccataagc gcaaccgtgt gaccatttca aaggagtgtt       600
     tggcgatgtt caaccgcaat ccaaacgaat ttttgcgccg tttcgttacc gtagacgaaa       660
     catggatcca ccacaccaca ccagagacca aagaacaatc aagacagtgg gtttctccgg       720
     gtgaacgtgc accaaagaag gccaaggtgg gtctgtcggc caacaaggtc atggccacag       780
     ttttttggga tgcacaaggt atcattcaca tcgattacct tgaaaagggt aaaacgatca       840
     ccggcgaata ttattcagag cttttggaca gattcgatat tgatttgaag cagaaacgac       900
     cgcatttggc gaaaaaaaaa gtgctgttcc atcaggacaa tgcacgggtg cacacgtgtg       960
     tagtcagcat ggcaaaattt cataaattgg gctacgaact gctaccccat ccagcatatt      1020
     ctccagattt agccccctgt gactattttt tgtttccaaa catgaagaaa tggctcggcg      1080
     gtaagagatt cgggtcaaat gaagaggtca tcacagaaac aaacgactat tttgagggcc      1140
     ttgagaaaac ctattatttg gaaggaataa aaaaattgga aaaacgctgg actaaatgta      1200
     tagagctaaa aggagattat gttgagaaat aaaacgcttc tttgacgaaa aaaatatatt      1260
     ttattcaaaa agtcacggac ttatcaaacg accctcgta                             1299
//
ID   Mariner2_AG repbase;    DNA;    INV; 2000 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   03-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Mariner DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Mariner2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2000
RA   Jurka J.;
RT   "Putative mariner/Tc1-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 646-646 (2009).
XX
DR   [1] (Consensus)
XX
CC   TA TSD (included).
XX
FH   Key           Location/Qualifiers
FT   CDS           624..1625
FT                 /product="Mariner2_AG_1p"
FT                 /translation="MGRSAHSTQQQRLDIKRLSAAGYSQRKIAEILGRSKT
FT                 FVYNALHSTGTKIPTGRPRKTSARDDARMTRLCKADPFKSARAIRDELQLS
FT                 VSDRTVQRRLFENNLVGRNPRKVPLLRRCHVQARLQFAREHYDWAGENLNK
FT                 WRNVLWSDESKVNLVGSDGKRFVRRPKNTAYRPQYTLKTVKHGGGNIMVWA
FT                 CFSWYGVGPIFWIKDIMDQHRYLNIIQTVMLPHAEWEMPLKWQFMHDNDPK
FT                 HTAKAVKKWFVDQKIDVMNWPAQSPDLNPIENLWKIVKAKLPPAGSRTKEK
FT                 LWKHIENAWYSIPPSTCKSLVESMPKRMRAVIRNNGHATKY*"
XX
SQ   Sequence 2000 BP; 606 A; 388 C; 426 G; 569 T; 11 other;
     tacagtgtcg gacaaatcra taggaccact tatcaattta ttattcactt atcatatttc        60
     atgwyttaaa gtgaatcaat ctttaccaaa ctttcatgaa agcwytatta gaatgtttac       120
     tttaagaatg tttttaaagt ttggtgaaaa gttaagaaac aaaaaagtta tgataagaaa       180
     tgtaaaaata acccaaaaat catgcgccaa aataatagga ccagttcaga aaattttaaa       240
     ataattatca tttattattg ttaaaacaca gtttttgatg ttattgagtt gtcggataac       300
     ttaacttaaa ttagtgaact aatgcgtatt catttttttt gtagaaacgc ttagcgcagt       360
     ggcaattcgc tgtgtcttta attaacatgc tctaatttac taatgcaaga atattacggc       420
     actcgcttaa gggttttgag ctccctttgc actgagagac gaaatagtgg tgagtacctt       480
     cgtctayggg tataaaagcg cgtcacagcg ctggatcgct tacactgtgt tctaagccgt       540
     tgcctagaac acttcacacg atccattagc tcgtgtattt ttgggtgcac tacttcaagc       600
     gcttgattga aggaattcca acgatgggcc gtagtgcaca ctccacacaa caacagcgtt       660
     trgatatcaa acgtttgtcc gctgctgggt actcccagcg taaaatcgcg gaaatacttg       720
     gccgatccaa aacattcgtg tataacgcgc tgcatagcac gggcacgaaa ataccaacgg       780
     gtcggccacg caagacatcc gctagggatg atgctcggat gacgcgattg tgcaaggctg       840
     atcctttcaa gtcggccagg gcaattaggg acgagctgca actttccgta agtgatcgga       900
     cagtgcagcg tcgcctattt gaaaacaacc tggtcggccg gaatccccgc aaagttccgt       960
     tgcttcgacg gtgccacgtt caagcccggt tgcagtttgc tcgagagcac tacgactggg      1020
     caggtgaaaa cctgaacaag tggcgaaatg tactgtggtc ggacgagtcc aaagtgaact      1080
     tggtaggttc ggatgggaaa cgctttgtgc gtcgtccaaa gaataccgcc taccggccac      1140
     agtacacttt aaaaaccgtg aagcacggcg gaggcaacat aatggtttgg gcatgtttct      1200
     cttggtacgg tgtcggtcct atcttttgga taaaagatat catggaccaa caccgatact      1260
     taaacatcat ccaaactgtc atgytgcctc atgcagagtg ggagatgcca ttgaaatggc      1320
     aattcatgca tgacaacgat ccaaaacata cygcaaaagc ggttaaaaaa tggtttgttg      1380
     atcaaaaaat tgacgtcatg aattggcctg cacaatcgcc tgacctgaat ccgatcgaga      1440
     acctgtggaa gattgttaaa gctaagcttc caccggcagg ttctcgaact aaagagaaac      1500
     tgtggaagca tatagagaat gcttggtaca gcattccgcc atcgacttgc aaaagtttgg      1560
     tggaatccat gcctaaaagg atgcgagctg tcatccggaa caatgggcat gctaccaaat      1620
     attaaatgct accaagttag cccaggataa ggctgttttg ttattttctt tagtttttca      1680
     aatgtacggg ctggccacat tgcgaattaa aagccggagc tgtaattatt tataggcaat      1740
     aatgataaat ggttaaaata ataaaatttt ctatactggt cctattattt tgtcgcatga      1800
     tttttgggkt tttttyaaca tttcttataa taactttttt gtttgttaac ttatcaacaa      1860
     actttcaaag cagactttaa gccaacatcc gaaaagtgct ttcatgaaaa tttggtaaat      1920
     attgattcac tttaggtaat gaaatgtgat aagtgaataa aacattatta agtggtccta      1980
     ttgatttgtc cgacactgta                                                  2000
//
ID   MARINER2_DM repbase;    DNA;    INV; 912 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 5.06, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   MARINER2_DM is a DNA transposon, a partial consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposase;
KW   Mariner/Tc1-superfamily; MARINER2_DM.
XX
NM   MARINER2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-912
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINER2_DM.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
DR   [1] (Consensus)
XX
CC   MARINER2_DM belongs to the Mariner/Tc1 superfamily of DNA
CC   transposons. It has generated duplications of the TA target
CC   sites upon its integration into the genome. MARINER2_DM has 29-bp
CC   terminal inverted repeats and it encodes transposase which is
CC   not completely reconstructed yet.
CC   There are ~100 copies of MARINER2_DM which are ~92% identical to
CC   the
CC   consensus sequence. Putatively, MARINER2_DM lost its activity
CC   more
CC   than ten million years ago.
XX
FH   Key           Location/Qualifiers
FT   CDS           56..799
FT                 /product="MARINER2_DM_1p"
FT                 /translation="CHSGALVVPFKRGYCKVLSRHGSVAIMRWNSEERAFA
FT                 VEAYFSSGCSVIKTQRAFRNRFNLAPLAPVPDRKSIVTWVTTFRQTASATK
FT                 RRTGVPRPVRSPENIEAVRASILRSPRRSARKHASALGLEDLGDTWFQQDG
FT                 ATAHTSRASMAVLREHFPERLISIRGDLEWPARSPDLSPCDFFLWGFLKSR
FT                 VYVNRPRTLQDLKTNIQEEIANITPAMLTRVTTNARNRFTQCMENGGRHLS
FT                 DFIFKKI"
XX
SQ   Sequence 912 BP; 257 A; 213 C; 204 G; 238 T; 0 other;
     cagggtgcgg cagcataact tcctttttta aaatgcgcgc cattcagtta gttgatgtca        60
     tagcggagcg ctagtggtcc cgttcaagag gggctactgc aaagttttgt cccgacacgg       120
     ttcagtcgcc atcatgcgtt ggaatagtga ggagcgtgcc tttgccgttg aggcctactt       180
     ttcaagcgga tgttcggtta ttaaaacaca gcgtgcattt cggaatcgct ttaatttagc       240
     cccgttggct cccgtcccag accgcaaatc aattgttaca tgggtcacta cattcaggca       300
     aactgcaagt gcgacaaaac gaagaactgg agtccctcga cccgttagat cacctgagaa       360
     cattgaagca gtgagagcgt caatattgcg atctccacgg cgttctgcgc gcaaacacgc       420
     atctgccctt ggacttgagg atttggggga cacttggttc caacaagacg gtgcaacagc       480
     acacacttca agagcatcga tggctgtttt gagggaacac tttccagagc gccttatctc       540
     aattagaggc gatttggaat ggccggcacg ctctcccgat ctgtcccctt gtgatttttt       600
     tctatggggt tttttgaaat cccgtgttta tgtgaaccgt ccaagaaccc tacaagattt       660
     gaaaaccaac atccaagaag aaattgccaa cataacacct gctatgctaa caagagtcac       720
     gacaaacgcc agaaatcggt ttacgcaatg tatggagaat gggggacgtc acctatcaga       780
     tttcatcttc aaaaaaatat aaataaaaac tttagacatg tacctacatt ataaaaataa       840
     ataaatattt tccgatgcct acaatagttt tcattgagtt ctgaaaaaag gaaattatgc       900
     tgccgcaccc tg                                                           912
//
ID   Mariner3-1_CFl repbase;    DNA;    INV; 3639 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 19.04, Created)
DT   10-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3639
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 830-830 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Probably still active. TSDs are 3-bp
CC   long.
XX
FH   Key           Location/Qualifiers
FT   CDS           1599..3173
FT                 /product="Mariner3-1_CFl_1p"
FT                 /translation="MFNPRNVAVLLYTALYMTGEFPESPVTTDENETKDMM
FT                 ENMLRSMYEEAFEVYEESSLDFQNEFDIPEVEPVIDEEREEDTYFVKEIEC
FT                 VADSVPIEYKRNAVELWRSGTKKSRTLASIRNRFRKVTSLRQLRRWEQQVN
FT                 QGGNRFDKLKEISTYTLNKFHEGIEKGIIIHDIDIARWALRAQKEVNLLGF
FT                 TASLSWVKRFKLAHNIVSRKITKFITKKNLASDKDLEARSKSFIENVKSSI
FT                 IQYGIENVYNSDQSGFQLEFHSGRSLSPIGIKKVERIVQSISATTHSYTIQ
FT                 PIVSADGRLLSPLFIVLKEPTGTFGPIVKETMFKDNNIFVMASKSGKLTSH
FT                 HFEIWIKEVFFPNVGPKSVLLLDSWTGHCPDIIQRNKPDFIDNINLLTIPA
FT                 GATGKIQPLDVFGFRLWKNFVRHFSDTIMLLDLDVKLHSRNNILKLQSLTH
FT                 NQFSSPRFKNLFKYAWYKSGYLEKKPEEFDTPVDFCFKTNLKPTCDICGEI
FT                 AVISCAWCKKSLCINHFFHDHHLCNRYQP"
XX
SQ   Sequence 3639 BP; 1329 A; 550 C; 576 G; 1184 T; 0 other;
     caaggaaagg gtcggaagtg tccccctccg attttaatga gctttgaata tgttgtagtc        60
     tagatcaaaa taggagacac gtattttttt ataagtgctg agtcggccgt taagggggtg       120
     aaacaccttc ttgaaaaaaa tcgatttttt catttctcag cggataccgt cgaagcgata       180
     agagatataa acaaaagttt caaataaaag ttttatggtc tttaatgtac ttcaaaatca       240
     tgtaatcaga tttgtcgaaa atgtcatatt tttcgaaatc cccccccctc ccttttaatg       300
     tttgaaaatt tttaaatttg tctcataaca aaacttatag ctcatttaac gacaaattca       360
     atcatatata ataaagttgt attccgaagt cacatttttc agaaataaat taaaaatatc       420
     cctatacact actatacgcc cgctttatcc gccttatgac gctcgttatt cacagcgaca       480
     gtcatttttc ttcgcaaact cacagaggca accataaatt agcaataaat aatttatgag       540
     aatatatttt tataaattat agaaattata tttataaata taattataaa ttatataata       600
     attataatta taatatatgt ctatattatg tgacaataaa tatacatata atttatatgg       660
     aaaagtaatg tttttaatgc atgaaaaata aaactagtcg gacaaggaaa attattgatc       720
     agatgccgat gttaatagat tcaattctat gaataaacag atgtcgcatt cgcgaaatga       780
     gttggtgcaa tatattattt tattaacaac tgcgtgcagt ggaacacata ttactattaa       840
     agcgtctatc gaatatacgc gagcgcgata gtaaatatat ttatatatat aagaaaataa       900
     ttaaaaggat tataacttat aaagcgagcg aaaaaatgcg tcgcgataag aaagtcagct       960
     gcccgaagtg ctgatacagc cagtatcaca cggccaagtc atcaaacaga ggaagaaatc      1020
     actctcgaaa tagcgctgaa ttgcaataaa atgcgaggaa gtcttcggac ttccttcgct      1080
     tgcattttga tcacgccact ttagaaataa ccaatgattt tatttggtca tgccaccgcg      1140
     cgatcctcct ccgataatcg ttcagaaccg gaggcgttaa aagccaccgc ctagaagcgg      1200
     cggacagtca caaatcagtt atcaaataat taacaagtgc tcgagttaat taacaagact      1260
     agccgttatc ctgaaaaaac aattgtgccc cacgcacaca acaatacagt atgtatgtac      1320
     tttttcgatt tttaaaactt ttatagtttt ttgcttttac ttacacttca ttcaaaattg      1380
     cggtttatct gttttgtttt aatgtattta aattataatt aatattttat tactttattt      1440
     aagttatgtg ataaaactgt tctatttttc atgaaactcg gaaaacgtaa caaattatta      1500
     atacgcatta aataataaaa tatttttgtt gctaataagt atttttttgc taatatttat      1560
     aaaacaaata tacataatgt taataatttt tttagataat gtttaatcca agaaatgtag      1620
     cagtactgct atacactgca ctgtatatga ctggggaatt cccagaaagt cctgttacaa      1680
     cagatgaaaa tgaaacaaaa gacatgatgg aaaatatgct tcgatcaatg tatgaagaag      1740
     cgtttgaagt ttatgaagaa tcatcattag attttcaaaa cgaatttgat atacctgaag      1800
     tagaacctgt aattgatgaa gaaagagaag aagacacata ttttgtaaaa gaaattgaat      1860
     gtgttgcgga ttctgtacca atagaatata aaagaaatgc agtagagtta tggagaagtg      1920
     gaacaaaaaa gtcaagaact cttgcatcta taagaaatag atttcggaaa gtcacgtcat      1980
     tacgtcaatt aagaagatgg gagcagcaag taaatcaagg tggcaacaga tttgataaac      2040
     tgaaagaaat ttcaacatat acgttaaata aattccatga aggtattgaa aagggaataa      2100
     ttattcatga cattgatatt gctcgatggg ctcttcgcgc acagaaggaa gtaaatctac      2160
     ttgggtttac agcatcatta tcatgggtaa aaaggtttaa gcttgcacat aatatcgtat      2220
     ctagaaaaat tacaaaattt ataacaaaaa aaaatttagc gtcagacaaa gatttagaag      2280
     cacgaagcaa gtcatttatc gaaaatgtta aatcttctat tatacaatat ggaattgaaa      2340
     atgtatataa ttcggaccaa agtggatttc aattagaatt tcattccggt cgttcactat      2400
     cacctattgg tattaaaaaa gtagagcgca tagtacaatc catatcagca actacacata      2460
     gttatactat acaacctatt gtttcagctg atggtagatt attatcgcct ctgtttattg      2520
     ttttaaaaga acctactgga acatttggtc caatagtaaa agaaacaatg tttaaagata      2580
     ataatatctt tgtcatggca tcaaaatctg gaaaattaac atcgcatcat tttgagatct      2640
     ggataaaaga agtgtttttt ccaaatgttg gaccaaaatc agtgttatta ttagattctt      2700
     ggactggtca ttgtcctgat ataattcaaa gaaacaaacc agattttata gacaatatta      2760
     atttgttaac tataccagct ggagcaacgg gaaaaataca acctttagat gtattcggtt      2820
     ttcgtttatg gaaaaatttt gttagacatt tttcagatac catcatgctt ttagatcttg      2880
     acgtcaagct tcattcaaga aacaatattt taaaattaca atcattaaca cataatcaat      2940
     tttcatcacc aaggtttaaa aatttattca aatatgcatg gtataaaagt ggttatttag      3000
     aaaagaaacc agaagaattt gatacaccag tagatttttg tttcaaaact aatttaaaac      3060
     caacatgtga tatttgcggt gaaattgctg taatttcttg cgcatggtgt aaaaaatccc      3120
     tttgtataaa tcatttcttt catgatcatc atctttgtaa ccgatatcaa ccatgaatat      3180
     ttgttattct tgtatgcaat aattatgtac ggtattttat gtaatatttc catatacata      3240
     tatataatga cttcggaata caactttatt atatatgatt gaatttgtcg ttaaatgagc      3300
     tataagtttt gttatgagac aaatttaaaa attttcaaac attaaaaggg aggggggggg      3360
     atttcgaaaa atatgacatt ttcgacaaat ctgattacat gattttgaag tacattaaag      3420
     accataaaac ttttatttga aacttttgtt tatatctctt atcgcttcga cggtatccgc      3480
     tgagaaatga aaaaatcgat ttttttcaag aaggtgtttc acccccttaa cggccgactc      3540
     agcacttata aaaaaatacg tgtctcctat tttgatctag actacaacat attcaaagct      3600
     cattaaaatc ggagggggac acttccgacc ctttccttg                             3639
//
ID   Mariner3-1_HSal repbase;    DNA;    INV; 3792 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   10-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3792
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 999-999 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. The 5'-end sequence before the polyN
CC   is predicated from the 3'-end. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           1024..2613
FT                 /product="Mariner3-1_HSal_1p"
FT                 /translation="MIPFNPWNVILLLYATFTARNLLQTPVTSEEMEVKEK
FT                 IVNMLTDMENKMDILIEEEKTLDFYDTNEIPQAERVDLLEHDEDEDYLPEE
FT                 VICTDVEAEISSDYKRKAVEFWKSGKIRPRTIEGVRRRYKKVTSIRQLRRW
FT                 EDYINAGGSRNEKLKAISEYTLNRFAEALEKGVIIHDINIARWANGAQEEE
FT                 NVPGFIASRRWVQRFKKKHNIVSRKITKFVTKKSLLSKSELENKCDTFITN
FT                 VKYYIDRYGVENIYNSDQSGFQLELHTGRTLAQKGTKKIESVVQSVSATTH
FT                 SYTIQPTISADGRLLSPLLIVLKEPTGTFGPRVQENLFNAPNIFVMASKSG
FT                 KLTSDYMKTWLREIFFPNVGPQSVLLLDSWSGHCPNVIQETRSDFASDIVF
FT                 LTIPAGTTGKIQPLDVYGFRLWKNFIKHFSDIVMLLDLAIDLHVRNNILKL
FT                 QSLTHHQFSSPRFHNLFKYAWFKSGYLQSRPCEFETPVEFCFQNDSKIKCD
FT                 ICGETAIIICSWCKKSLCITHFFHDHHLCNEYVP"
XX
SQ   Sequence 3792 BP; 1286 A; 596 C; 640 G; 1244 T; 26 other;
     caaggagagt gtcacaactg tccctcaccg atttgaatgg gcttcggata tgttgtagag        60
     catcaaaaac taagggatac atattttttt atatcggctt cggagcatgt ttagggggtg       120
     aaaccacccc ttgaaaaaaa tagccgttat cgtttttatc aaatattttc taaattatga       180
     gtcatatgaa aaaaagtttc agacaaaagt tttgcaatat tttatgctct ttgcaaccat       240
     gtgttcagtt ttttaaaatt tcaaatgttg aactactccc cccctctcgt tactctggca       300
     aaatttttaa gtttttgtaa ggacaaaaat tgtagagcat taaataccaa atccatccat       360
     atataatatt agaaaatggt atttaatatt ttggacaaaa cgcaatgaga aaacttcatg       420
     gtatatgtgc cgcgctgccc gagtagatag atactgtagg taggtacgct gtgatatttc       480
     tctacannnn nnnnnnnnnn nnnnnnnnnn nnataataat atgcgaacat attttatata       540
     taattatata taattataaa ttatatataa ttataagttg tacatttatt tctgagcatt       600
     tataatgccg tgtatacaaa gcaaagtcaa ctgtgtcgca gtgcatcaaa aacaatttat       660
     ttatacttta cttctataaa taaattttgt tttcgtttcg catgaaacag actcatgtga       720
     tcgtcatgcg cactataatt ggctcatctg atcgtattgc gcactatgca gactataaaa       780
     atgtctgtaa tatttgaaaa cgggcagttc atttcatgag ttcatagtgt aaagaagtgt       840
     gttatacact ataattttgt gaaattatgt aagtatttat tgtattgtat tattgtctta       900
     cgcttgtcac tcttcatatt tatattattt aaattattat acactttgtg gagttattaa       960
     tattataata tacggaagac cggagcagca ttaaacaata gttaaatttt aatattttgt      1020
     agaatgattc catttaaccc atggaatgtt atactgttgc tatacgcaac attcactgct      1080
     cgtaaccttc tacaaactcc ggtaacttcg gaagaaatgg aagtgaagga gaagattgta      1140
     aatatgctca cagacatgga aaataaaatg gacattctaa tagaagagga gaaaacactt      1200
     gatttctatg atacaaatga gatcccacag gcggaaagag ttgatttgtt ggagcatgat      1260
     gaagatgagg attatcttcc agaagaagtt atttgtactg atgttgaagc agaaatatca      1320
     agtgactata aaaggaaagc tgtggaattc tggaagagcg gtaaaataag accaagaacg      1380
     attgaaggag ttagacgaag gtacaaaaaa gttacatcaa ttcgacaatt acgacgatgg      1440
     gaggactata tcaatgcagg tggtagcaga aatgaaaaat taaaagcaat ttctgaatat      1500
     acactaaacc gtttcgctga agcacttgaa aaaggagtca ttattcatga tattaacatt      1560
     gctcgatggg ctaatggagc acaagaagag gaaaatgtgc ctggattcat agcatcacgt      1620
     aggtgggtac aaagattcaa aaagaaacat aatattgtgt ctaggaaaat aaccaaattt      1680
     gtcacgaaaa aatccttgtt atccaaatca gagttagaaa ataaatgcga tacatttatt      1740
     acaaatgtca aatattatat tgatcgatac ggggtggaaa atatctacaa ttcagatcag      1800
     agtgggttcc aattagaact tcacaccggt cgtaccttag cacaaaaagg tacaaagaaa      1860
     atagaatccg tagtgcaatc tgtatcagca accacgcata gttataccat acagccgact      1920
     atttccgctg atggtagatt attgtcgcct ctgttaattg tattaaaaga accaacagga      1980
     acgttcggtc cacgagtaca ggaaaattta ttcaatgctc ctaatatttt tgtaatggct      2040
     tccaaatcag gtaaattgac atcagattat atgaaaacct ggttgagaga aatatttttt      2100
     ccgaatgtcg ggccacaatc cgtattatta ttagattcat ggagtggaca ttgtcccaat      2160
     gtaattcagg aaactagatc ggattttgca tcagatattg ttttcctaac cattccggcc      2220
     ggtacaacgg gaaaaataca accattagat gtatatggct ttcgattatg gaaaaatttt      2280
     attaaacatt tttctgatat tgtaatgcta ttagaccttg caattgatct tcatgttaga      2340
     aacaatattt taaaactgca gtcattaacg caccatcaat tctcgtcacc caggtttcac      2400
     aatttattta aatatgcgtg gtttaaaagt ggatatttac agagtaggcc atgcgaattc      2460
     gaaacaccgg ttgagttttg tttccaaaat gattctaaaa taaaatgcga tatttgtggc      2520
     gaaactgcca taattatttg ctcttggtgc aaaaaatcac tttgtatcac acattttttc      2580
     catgatcacc acctttgcaa cgaatatgtg ccataaatgt aacatttatt tttcgtttat      2640
     atgcaaacac tgtattgatt tttttattaa tattgtgaaa tatatataat aacgtgttat      2700
     tcttctataa tttattgtat tgttcctctc tatcctataa attattactc cataattttt      2760
     gttaagccct tcgttatgtt tcattcagca attaataaaa tatattgtat tgtcacacta      2820
     cacgcttgca gaggtaacat aacgtcggcc taattagaaa acctcttaat tccaattttt      2880
     gacaaaattg agactcattt tattcgatca aagtcgacga gataaatcga acaaaatgag      2940
     tatctcaatt ttgtcaaaaa ttgaagttag gaggttttct aattaggccg atgataatgt      3000
     gtttcattat ttcacgtgca ttgcatgaaa tactttttta atcattttaa ttatccttaa      3060
     tcgacatacc tttcagattg tagtgaacat aaattttaca cattaaatga agaaaatata      3120
     catttggagc ttttgtacaa atagcgatgc tgcacacaca tttgctactg ttatatatgc      3180
     aaattgttct attgttcacg ttttcatcaa gcatttttat ttcgtgtaat acattgtata      3240
     tcatatcatt acgattaatt gtagcataag aaaatatgca caagcagtcg tgaagcatag      3300
     tgcaattgta gagaaatatc acagcgtacc tacctacagt atctatctac tcgggcagcg      3360
     cggcacatat accatgaagt tttctcattg cgttttgtcc aaaatattaa ataccatttt      3420
     ctaatattat atatggatgg atttggtatt taatgctcta caatttttgt ccttacaaaa      3480
     acttaaaaat tttgccagag taacgagagg gggggagtag ttcaacattt gaaattttaa      3540
     aaaactgaac acatggttgc aaagagcata aaatattgca aaacttttgt ctgaaacttt      3600
     ttttcatatg actcataatt tagaaaatat ttgataaaaa cgataacggc tatttttttc      3660
     aaggggtggt ttcaccccct aaacatgctc cgaagccgat ataaaaaaat atgtatccct      3720
     tagtttttga tgctctacaa catatccgaa gcccattcaa atcggtgagg gacagttgtg      3780
     acactctcct tg                                                          3792
//
ID   Mariner3-1_LMi repbase;    DNA;    INV; 3591 BP.
XX
AC   .
XX
DT   02-MAR-2014 (Rel. 19.12, Created)
DT   10-MAR-2014 (Rel. 19.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3591
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3275-3275 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           577..2175
FT                 /product="Mariner3-1_LMi_1p"
FT                 /translation="MWNPINVLNLAKMKYEERGFQPKSPTSPEDVHMCHLL
FT                 IDFFDIHSNDIDISFEIVETLEEIGNNCDDSTNCDSDDVSCASNSSEEEYL
FT                 PSLKKTRTTSAFSDKEKAVKYWLNEGGKKRLKLSSVQRRFRFVKSERELYK
FT                 WKKELHEVRNMRQTETRKHLKEKLFERFRTARERQCTVTDGDLRDWALRIA
FT                 SDTNIANFQASSTWLQRFKKLYRIGSRKITKFTSRKRVEQLPVIDNAIEKF
FT                 ISDIKTKLAVIPATAVYNADQSGFVKELRAHRTLSFRGEKKTESIAQSMNA
FT                 MTHSYTIMPVISMSGLLFPQLYICLQEPQGKLGPKIKNGLFNCKNLVIDVS
FT                 KSGKMGKNNFQHFVRNVFLPVAETNSLLLLDSWSGHNDASVFVEDGEKSVD
FT                 VMWIPPGTTSAIQPLDKEFFRQWKAFFRKLSDNIISDTSLSFQVYQRNSIL
FT                 KLQSFVHYQFSSPRFTNLIKYAWYAAQYAEQRPGPFLTPSQFCLNKTSGYC
FT                 EVPECINFSFVRCAWCKKNICFCHSIDTSHFCDDYME"
XX
SQ   Sequence 3591 BP; 1094 A; 744 C; 745 G; 1008 T; 0 other;
     cagggtgagt cacctaacat taccgctgga tatatttcgt aaaccacatc aaatactgac        60
     gaaccgattc cacagaccga acgtgaggag aggggctagt gtaattggtc aagggaacgg       120
     tccaataaga catgtcgaaa cctaccctga aattttttac acaggcagaa gacaacgaaa       180
     gaaatgcact gtcaaaattt tagctgctaa gaggcactgc aagtattttt aaaaaatagc       240
     tgaaaattgc caagttcgta gcgcgccagg tggcggtaga aatgtacacc cctactggcg       300
     ctgtagcaac agcgcatgcg caactaggcg cgcgcgcgca cacacacaca cacagtcgag       360
     gtcggcggta tattgtaaac aggaaacacg acacaacccg atcgtaattt gtaaaggacg       420
     tttcaggtta tcgttcgtct attaactatt atcagttgaa ttttgcagta ttggtaagta       480
     ttgacaataa agataaagct gaattaatat ttattgtgct ttcgtcaggc atgcctgctt       540
     atagtatctt ttttttcttc ttccagtttc acagtaatgt ggaatccaat taacgttctc       600
     aatttagcaa agatgaaata cgaagaacgt ggtttccagc cgaaatcacc tacttctcct       660
     gaggacgtac atatgtgtca tttgttgatt gatttctttg acattcattc gaatgatatc       720
     gacatttcgt ttgaaattgt ggaaacgtta gaagaaatag gaaataactg tgacgattcc       780
     acgaactgtg actcggacga cgtcagttgt gccagtaaca gttctgaaga agaatacctt       840
     ccaagcctaa aaaaaacacg tactacatca gctttcagcg acaaagaaaa ggcagtgaaa       900
     tattggttaa acgaaggagg gaaaaaacgc ttgaagttaa gcagtgtgca aaggcgtttt       960
     cgtttcgtaa aatctgagcg tgaactttat aaatggaaga aagaattaca tgaagtaaga      1020
     aatatgcgcc aaacggaaac tcgaaaacat ctgaaagaaa aactgttcga aagatttaga      1080
     actgctcgtg agaggcaatg caccgttacc gatggagatc tacgagactg ggccctccga      1140
     attgcatctg acacgaacat tgctaatttc caggcttcgt cgacctggct acaaaggttc      1200
     aagaaattgt acagaatagg aagtcgcaaa attaccaagt ttacgtcacg taaacgtgta      1260
     gagcagctac cagtgataga caatgccata gagaagttca taagtgacat aaagacgaaa      1320
     cttgctgtta tccctgcaac agctgtttat aacgctgatc agtcaggttt cgtgaaagaa      1380
     ctgcgtgcac accgcacttt atcatttcgg ggtgaaaaaa agacggagtc gattgcccaa      1440
     tcaatgaatg caatgacaca ttcatatacg ataatgccag tgataagtat gagtggttta      1500
     ctgtttccgc agctgtatat ctgtcttcaa gaacctcaag gcaaattagg accaaaaata      1560
     aaaaatggac tgtttaattg caaaaatctt gtaatcgacg tatcaaaatc tggaaaaatg      1620
     ggaaagaata attttcaaca tttcgttcga aacgtattcc taccagttgc agaaactaat      1680
     tcattacttt tgttggattc atggtctgga cataatgacg cctctgtttt tgtggaggac      1740
     ggcgaaaaat ctgtggatgt aatgtggatt ccgcctggaa ctactagtgc gattcaacct      1800
     ctcgataaag aattttttcg acagtggaaa gcatttttta ggaaattatc agacaacata      1860
     atttccgata cctctctctc atttcaggtt tatcagcgga acagtattct taagctccag      1920
     tcatttgtgc attaccagtt ttcttcgcca cgctttacga atttgatcaa gtatgcctgg      1980
     tatgcagcac aatatgcaga acaacggccg ggaccatttc tgactccgtc ccagttctgt      2040
     ctaaataaaa ctagtggtta ctgcgaagtg cctgaatgca tcaatttttc ctttgtccgg      2100
     tgtgcctggt gcaagaaaaa tatttgtttt tgtcattcaa tagacacttc gcatttttgt      2160
     gacgactaca tggaataaac aaagaactat ttcactgata gtcaaatgca caaaattcaa      2220
     aaattgtttt aaggaatggc cgacaggaac tgttataaaa tgtggtactg ctagacacat      2280
     ttcatttcaa caaattacaa gtccacattg acggaagtcg tctatgacat caaacactgt      2340
     catgaattta ttttctctgc taaccacttt tatcagaatt tcatgtgcaa gagttgaact      2400
     gtcggtatca agttattcaa aaaatgtttg tatcgttaaa gccaggtgtt caccagagca      2460
     aacaaactaa caaggatgag caaaagaaaa ttctatctgg tgtacccggt aggcctcttg      2520
     caggtctttc aactggacgc cactgcagct gcttaggtgt ccctaacctt tcccagttac      2580
     ctgatcggaa aatagagacc tgcagtttaa cgtgtaatcc gaactacatt tctttcgtag      2640
     ccactccacc atctttgagc agtgaatgct cggttaaaaa tcgtagtgaa aaaatttgtg      2700
     gtctgaacgg gatttgatcc cgcgctctct ggttcacgaa gcgcgcactt tgccactaga      2760
     ccagtagacc tgatacgcgt agtgttagcg ccagccgtgt cacctcctta gatgatgctc      2820
     gacgtcggta attagtgttc tctttataaa aatctgctca atgctaatga gaagccagag      2880
     aaaaattgca gccgacatac aaggaaaatt ttggaccagt gctaagggga gatggagatg      2940
     aattccgtgt aaagtgcacg atctcaatgc gtgtctcgct tccatacaaa ttgagacaca      3000
     caaattcttc cttcccttcg ccattttgca tactccgtca aaaatagtgc gctcgccatg      3060
     cacaataatc ctcactgaat agcaaagttt cgcgctgtgg ctctaacagg gtatagttgt      3120
     atgctgtatg ccgaatatta cctccaaaaa ctaaaaacca ataacacacc gttcgcaggc      3180
     aatgtttgct acctcgtgtt ctcttccgtt ccctctagta taaacgattc aacccatata      3240
     caagcgaatg gtagtgaatt ttctgcaaat gctcattcgt tcgtgttcgc ttccattcac      3300
     tacattgtaa accagacttt aggtgcttaa tattggtgac tgtgaactct gcataattcc      3360
     gctacgtggc gctgcgtgag tgattcgccg agttgcgcgc taagcgggca gggctgtaca      3420
     aaccgctgtt ataagctgtt cttcgcgcgg caaaaatgcg taacttcaaa taaaatactt      3480
     gcagtgcctc ttagcagcta aaattttggg agtgcatttc tttcgttgtc ttctttctgt      3540
     gcaaaaaatt tcagggtatg tttcgacatg tcttattgga ccgttccctt g               3591
//
ID   Mariner3-2N1_LMi repbase;    DNA;    INV; 1222 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-2N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1222
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3276-3276 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1222 BP; 337 A; 259 C; 270 G; 356 T; 0 other;
     caagggaaca tcatcaactc gacctcatat tttcttgaga aaaaaataca tgagctagat        60
     atcaacccca gaaatcgata tcacgtgaaa atttgggcca ttattcagat actacgcagt       120
     tacggcctcc tcaaagtaca gcttttaaac attcgcgcgc tcgggttgtt cctcactcgg       180
     cccgcttcac tgcggccgct taatgcccga acgtctagta ctgtgagcag agtctagtaa       240
     gaggtttgtg ttcgcgatgt caattaaccc acaggctgtc gtgcgacacc tccaggagcg       300
     gtatggaatg atgactaatc tgcaacgatt aaatgtcaaa gaattagagc tctttaaagt       360
     cgtcaccggt aagcataatc atttgcagtt attagacgta ctatacacgg taaaagaaaa       420
     tacatggcgc tttctttatg cttttcctta tatctttcaa ctgcgttgca gatatcatag       480
     acaattgcac tgatgaagac gtgctggata tagaagaaaa tagcgggttg acgttcggtg       540
     cagatttaca agaggatgac gtcgacgata acgacgctgc catttcacca ccgtcagatt       600
     cgtcgagcac tttcattgct tcaacggagc ttgggcgtgg aattgaggtc gtcagtgatg       660
     gtgaaagctg ctttgatgat tttaaatcgt cgaataccac tttgcccgtc tccgtaacag       720
     aagaatatat gcaacgagcc gtttgcgttt tatacagcgc gtcacaactg cagtggaaac       780
     gaatgagacg gtttttcaac aagcagtgta acgtaattta attttcaata ccttttatgc       840
     acatcatttt gttatatgta aagctgacac tattgaagtg gagtaaactt gaaagagtta       900
     cagtacatat gtttcatttt gtaatattat ttcctcctcc acttccctag ctcttcaaat       960
     ttcacatttc gggggactcg ctgttgtccc ttcattgcac agcacttcgc gttcgggcat      1020
     taagcggccg cagtgaagcg ggccgagtga ggaacaaccc gagcgcgcga atgtttaaaa      1080
     gctgtacttt gaggaggccg taactgcgta gtatctgaat aatggcccaa attttcacgt      1140
     gatatcgatt tctggagttg atatctagct catgtatttt tttctcaaga aaatatgagg      1200
     tcgagttgat gatgttccct tg                                               1222
//
ID   Mariner3-2_HSal repbase;    DNA;    INV; 2185 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   10-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   Mariner DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2185
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1000-1000 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(906..1667,1642..1860)
FT                 /product="Mariner3-2_HSal_1p"
FT                 /translation="MSMNPKNILNLLRLYFEDPVYNIQSNITEEEKSFASH
FT                 LADLMKNAINSQVFIESYDCLSFHDPSVTPDAVLVEEESEYDSQGDVQDDT
FT                 KFDEMVDLNYKRKVVEYWRSGKKKRLSFETVKNRFKKVLNQRQLYRWEAHV
FT                 AEGGSRSDKLLFISQYVMEQFNSASDKGVPIHDLDLKRWAITAREDVNLSR
FT                 QSFSASTKWVYNFKIQHGIVSRKISYLIKICQNIITYSARILTDNNLLEDQ
FT                 LPNLKKTDATGQFKKLTRQVNFEYRFIVKFSKCNCLRQYPPSLVQFRSVIL
FT                 RHIPPSVIFHHLEFCNFISRFVIRGPKNLQIPKLV"
XX
SQ   Sequence 2185 BP; 719 A; 351 C; 399 G; 716 T; 0 other;
     caagtaacac tacccaactg tcactcaccg attccaatga aatttggcat gcacgtagaa        60
     cattgaaaaa tattgaacac gtgttttttt atatcggctg acaacgcatt ttaagggtgg       120
     aaatcacccc ttgatccctg aacatgaaag cactatttca accctttgta catattacat       180
     gtgatttccg tcaaacttgt cttccattga actagtcagt aaggggtttt tagggtcgct       240
     gattacgaat ctggagataa aattacaaaa ttcaagatgg cggacccaat atggcggacc       300
     gaaattgtaa aaagatggct gattcaaacc aattttggta tctggaggtt tttggggcct       360
     ctaattacga atctgaagtt ggaagtcaaa atataattcg tttgtcgcac tttattatta       420
     ttattattat tattgtaatg tgttttactt gtaagatttt taagaaggtt tattgtaaac       480
     tttcaaggat attaattata taaattttct ggacgttaag attaacgttt tgaacattaa       540
     tagatttttt gctgttcaag tccagaattt aaataaataa tatgaatgaa tatgaataaa       600
     tatataaata aatagaatat aaataaatga ataaatataa ggcataagag aaagtataaa       660
     tctgagttga caaaatcaaa atcgcatata aatgtttcta cgaaacaaat gagagtcgac       720
     gtccgatttt cttttttctt acgatagaga catttatttg agatattatc aactcgttct       780
     cattttttgt atttattgtc cgttggcgat cggctataat aaactattcc ttgtgaattt       840
     cgttccgcta ttatattaac aattcattat atgattattc ttgattcgga aggagtgatt       900
     tcgcaatgtc gatgaatcca aaaaatatat taaatttatt acgcctctat ttcgaagatc       960
     ctgtgtacaa tatacaatca aatataactg aagaggaaaa atcgttcgcg tctcatctcg      1020
     cggatttaat gaaaaatgct atcaatagtc aagtgtttat tgagagttat gattgtttaa      1080
     gcttccatga tcccagtgta actcctgatg ccgttttagt tgaagaagag tcagaatatg      1140
     attcgcaagg ggatgtgcaa gacgatacga agttcgacga aatggtagac ttgaattaca      1200
     agaggaaggt agttgaatat tggcgatcgg ggaaaaagaa aagattgagc tttgaaacag      1260
     taaaaaaccg attcaagaaa gtcttaaatc aacgacaatt atacagatgg gaagcacatg      1320
     ttgccgaagg tggatcgaga agtgataaat tattatttat ttcacaatat gttatggaac      1380
     aatttaactc tgcttctgac aaaggtgttc ccatccacga tttagatttg aaaagatggg      1440
     ccatcacggc gagagaagat gttaatttat ctcgtcaatc attttcggct tcaacgaaat      1500
     gggtgtataa tttcaaaatt cagcatggga ttgtttcaag gaaaatatct tatcttatca      1560
     agatatgtca gaatatcatt acatattccg ctcggatact gacggataat aatcttttgg      1620
     aagaccaact tcctaatctg aaaaaaactg acgcgacagg tcaattttga ataccgattc      1680
     attgttaaat tcagtaaatg taattgcctg aggcaatatc ctccttcact ggtacaattt      1740
     cgatctgtca tattgcgtca tattccgcca tctgtcatat tccaccatct tgaattttgt      1800
     aattttatct ccagattcgt aattagaggc cccaaaaatc tccagatacc aaagttggtt      1860
     tgaatcagcc atctttttat aatttcggtc gccatattgg gtccgccatc ttgaattttg      1920
     taattttatc tccagattcg taatcagcga ccctaaaaac cccttactga ctagttcaat      1980
     ggaagacaag tttgacggaa atcacatgta atatgtacaa agggttgaaa tagtgctttc      2040
     atgttcaggg atcaaagggt gatttccacc cttaaaatgc gttgtcagcc gatataaaaa      2100
     aacacgtgtt caatattttt caatgttcta cgtgcatgcc aaatttcatt ggaatcggtg      2160
     agtgacagtt gggtagtgtt acttg                                            2185
//
ID   Mariner3-2_LMi repbase;    DNA;    INV; 2443 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2443
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3277-3277 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(438..1067,956..1867)
FT                 /product="Mariner3-2_LMi_1p"
FT                 /translation="MLFLISFNCVADIIDNCTDEDVLDIEENSGLTFGADL
FT                 QEDDVDDNDAAISPPSDSSSTFIASTGLGRGIEVVSDGESCFDDFKSSNTT
FT                 LPVSVTEEYMQRAVAFWKSGKKGNLSFKTVKRNFKLLKQKRDLYVWNKYVE
FT                 NCGTHRQKLAKVNLICFDKFNNAYSDKLPIHGVNIQQWGVQAAVEVGLKIS
FT                 RHLLGGFTVSRRNMVLCHERHTAVGRSSRSGGGPKNFKASAGWVYGFKKKY
FT                 GIVSRKITHFTTKKLRNETAIINACEKFVADTRAVIEVVGTRNVYNMDQSG
FT                 FNLEMTSGRSLAKKGTKDVTVVQSVSNTTHSYTIMPTISADGHLHSPLFIV
FT                 LKELTGSFGPRVRQNLFHADNIVVVASSSGKVNKEHLQQWRAEVFNKIIRD
FT                 DNRSVLIVDSFSGHKGLSVDEGHGVEDTAVSILTIPPGGTRYCQPLDVFGF
FT                 RVFKGFVRRFTNSVRLLGVSMNFGQRNTILQMQSLIHRQLCAPVFRSVFRY
FT                 AWYRSGYTSDRPDTVNIL"
XX
SQ   Sequence 2443 BP; 695 A; 492 C; 565 G; 691 T; 0 other;
     caagggaaca tcatcaactc gacctcatat tttcttgaga aaaaaataca tgagctagat        60
     atcaacccca gaaatcgata tcacgtgaaa atttgggcca ttattcagat actacgcagt       120
     tacggcctcc tcaaagtaca gcttttaaac attcgcgcgc tcgggttgtt cctcactcgg       180
     cccgcttcac tgcggccgct taatgcccga acgtctagta ctgtgagcag agtctagtaa       240
     gaggtttgtg ttcgcgatgt caattaaccc acaggctgtc gtgcgacacc tccaggagcg       300
     gtatggaatg atgactaatc tgcaacgatt aaatgtcaaa gaattagagc tctttaaagt       360
     cgtcaccggt aagcataatc atttgcagtt attagacgta ctatacacgg taaaagaaaa       420
     tacatggcgc tttctttatg cttttcctta tatctttcaa ctgcgttgca gatatcatag       480
     acaattgcac tgatgaagac gtgctggata tagaagaaaa tagcgggttg acgttcggtg       540
     cagatttaca agaggatgac gtcgacgata acgacgctgc catttcacca ccgtcagatt       600
     cgtcgagcac tttcattgct tcaacggggc ttgggcgtgg aattgaggtc gtcagtgatg       660
     gtgaaagctg ctttgatgat tttaaatcgt cgaataccac tttgcccgtc tccgtaacag       720
     aagaatatat gcaacgagcc gttgcgtttt ggaaaagtgg aaaaaagggg aatctatctt       780
     tcaagaccgt caagaggaac tttaaattat taaaacagaa aagggatctg tacgtttgga       840
     acaaatacgt tgaaaactgt ggtacgcatc gtcaaaagct tgcaaaagta aatttaatct       900
     gtttcgataa atttaataat gcatacagcg ataagttgcc gatccacggc gttaacatac       960
     agcagtgggg cgttcaagcc gcagtggagg tgggcctaaa aatttcaagg catctgctgg      1020
     gtgggtttac ggtttcaaga agaaatatgg tattgtgtca cgaaagataa ctcattttac      1080
     aacaaaaaag ttacgtaacg aaacagccat aattaatgcc tgtgaaaaat tcgtcgccga      1140
     caccagagct gttattgaag tggtcggtac acgtaatgtt tacaatatgg atcaaagtgg      1200
     atttaattta gaaatgacgt caggtcgatc tcttgcaaaa aaggggacaa aagatgtcac      1260
     agtcgtgcag tccgtcagta atacgactca tagctacaca ataatgccaa cgatatctgc      1320
     agacgggcat ttgcattcac ctctgttcat tgttttaaaa gagctgaccg gatcgtttgg      1380
     gccgcgagtc agacaaaatt tgtttcacgc ggacaatatt gtcgtagtcg cctcatcttc      1440
     tggaaaagtg aacaaggaac acttacagca gtggcgagca gaggtgttta ataaaatcat      1500
     ccgagatgat aacagatcag ttttaatagt ggactcgttt tctggtcata aaggtttgtc      1560
     agtggatgaa ggacacggag ttgaagacac cgcagtttcc atattgacaa taccacccgg      1620
     tggcacaaga tactgtcagc cactagatgt atttggcttc cgtgtgttca agggttttgt      1680
     ccggaggttt accaactccg tacgacttct gggtgtcagt atgaacttcg gtcagcgtaa      1740
     caccatcctg caaatgcagt cgcttattca caggcagtta tgtgcaccag tgtttaggtc      1800
     agtgttccgg tacgcttggt atcgaagcgg ctacaccagt gaccggccag acactgtgaa      1860
     catcctgtga aatactgttt tgacgctggt ggagtgctat gttcattatg tcaaagtgcg      1920
     cgatttctaa cgtgtagctg gtgtcgaagg tctctttgct ttgaacattt ttataccgcg      1980
     cttcacaact gcagtggaaa cgaatgagac ggtttttcaa caagcagtgt aacgtaattt      2040
     aatttttaat accttttatg cacatcattt tgttatatgt aaagctgaca ctattgaagt      2100
     ggagtaaact tgaaagagtt acagtacata tgtttcattt tgtaatatta tttcctcctc      2160
     cacttcccta gctcttcaaa tttcacattt cgggggactc gctgttgtcc cttcattgca      2220
     cagcacttcg cgttcgggca ttaagcggcc gcagtgaagc gggccgagtg aggaacaacc      2280
     cgagcgcgcg aatgtttaaa agctgtactt tgaggaggcc gtaactgcgt agtatctgaa      2340
     taatggccca aattttcacg tgatatcgat ttctggggtt gatatctagc tcatgtattt      2400
     ttttctcaag aaaatatgag gtcgagttga tgatgttccc ttg                        2443
//
ID   Mariner3-3N1_LMi repbase;    DNA;    INV; 967 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-3N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-967
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3278-3278 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 967 BP; 255 A; 218 C; 215 G; 279 T; 0 other;
     caaggggaac accaagtatg gtaccaacga attttgatga gtcgcaggta tattgtgcgg        60
     gaactcctcc agaccaccaa gctaaaagga tttgttccaa tgcgccttgg tttccacgaa       120
     aatcgcgatc aaagtccagc gcgtaacagc tatacctgta ctgagtcacc aggagcacgt       180
     gagccagcgt ggtgtaatta gcaaggcgct agcctgtcgc gcatacgacc cgagttcaaa       240
     tcctgcttgg aaccaatttt ttttcacttg tccgacgatt gattgtgcat aattatatgc       300
     tttaatagcc actcttatgt taatgcttga gtaattggtc atgataatag cttatgttaa       360
     ttgctcaata tgttatgtat tgcgcacgat tattttattt tattcgttat ttcgaagcat       420
     acttttacgg cgactgaaag atcagtaaac cgtctgtagt tatcagctgt aacatttgtg       480
     cagcatttgc tagctgcgtt tacagtcccc ggccccactg ttgttacacc gtcgaatgca       540
     gtgtgtgccc acttgacgcg tcccagcgga ttattatgct gcggccaggc gggtagtcat       600
     tcgtagcgta tcgttcacat gtaactgtaa ttacctgata taactttatc tttgcaataa       660
     gaaataagga atataattat acacagtcaa tcgccggaca agtgtaaaaa aaaaaaaccg       720
     agcaggattt gaactcgggt cgtatgcgtg acagtcgaac accttgctaa ttacaccacg       780
     ctggctcacg tgctcctgat gactcagtac aggtatagct gttacgcgct ggactttgat       840
     cgcgattttc gtggaaacca aggcgcattg gaacaaatcc ttttagcttg gtggtctgga       900
     ggagttcccg cacaacatac ctgcgaccca tcaaaattcg ttggtaccat acttggtgtt       960
     ccccttg                                                                 967
//
ID   Mariner3-3N2_LMi repbase;    DNA;    INV; 1114 BP.
XX
AC   .
XX
DT   14-JUL-2014 (Rel. 19.12, Created)
DT   14-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-3N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1114
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3279-3279 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1114 BP; 321 A; 229 C; 228 G; 336 T; 0 other;
     caaggggacc atcagaagtg taaataacgg attttgatgg gtctcggata tgttgtagag        60
     ggacataccc tgagtatgag gctatccgac attttttagc gacgggcctt ggttttcgag       120
     aaaattgatg ttgaagttca ctgcgcgatg taagacgcgt aacgttagcc acgttccaac       180
     caagtgagcg tggcgcagcg gttaaggtct ccagctacca cgctggaggt accgtgttcg       240
     ggtcctctcc ggtttttgct ttttttttta atcagaatag tccgacattt ttccatttta       300
     ttttacagaa tatcaacaaa cagtgtacat tgtgtgaaat tagtaagaaa tattcaattt       360
     tgccgtagta atttaatttt cacgtcatta ttacaaaatc ttactcgcta tcgcctgcat       420
     cgcttgctat gccacaacag aaatccggat gatattcgtc gtaaaaccac actcattaat       480
     tttgcatcaa ttcagggaac ctgctttttc gaagatgatc aaatacgcat ggttcgcatc       540
     aaagttaacg gatgaaagag aactctttgt taatgtaaat gaactttttc tggtatcgct       600
     cttaaaaact ccgtgcgcct gcaagacagt agcttttatg aaatgtgctt ggtgctgtaa       660
     accattttgt ttcggttgat tttacgacaa atatcatccg gatttctgtt gtggcatagc       720
     aagcgatgca ggcgatagcg agtaagattt tgtaataatg acgtgaagat taaattacta       780
     cggcaaaatt gaatatttct tactaatttc acacaatgta cacttttttg atattctgta       840
     aaataaaatg gaaaaatgtc gactattctg atttacaaaa agcacacaac agaaccgaac       900
     acggtcctcc agcgtggtag ctggagacca ccacttggtt ggaacgtggc taacgttacg       960
     cgtcttacat cgcgcagtga acttcaacat caattttctc gaaaaccgag gcccgtcgct      1020
     aaaaaggcgg atagcctcat actcagggta tgtccctcta caacatatcc gagacccatc      1080
     aaaaccgtta tttacacttc tgatggtccc cttg                                  1114
//
ID   Mariner3-3_HSal repbase;    DNA;    INV; 4187 BP.
XX
AC   .
XX
DT   13-JAN-2012 (Rel. 19.04, Created)
DT   10-MAR-2014 (Rel. 19.04, Last updated, Version 2)
XX
DE   Mariner-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-3_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4187
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1001-1001 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           2127..3290
FT                 /product="Mariner3-3_HSal_1p"
FT                 /translation="MRGGSNTDKLVVIAEYVLIKFQEAVNRGLIIHDINLR
FT                 KWALEAKEQVDFSSFKAGNWWIWNFKKAHRITSRKITAFKTRSSHLTDLTI
FT                 RQNAEEFVNTVKPHINVIGAESTYNADESGFNLEIHAGRTLANVGVKTVGA
FT                 TIQSLSAMTHSYTIMPIISADGHLLSPLYIVLKESTGVFGPQVEQTLFRPV
FT                 NIYIAASKSGKLTTEHFKNWFQEVYLPNTGEKSILLLDSWTGHCPNQLEEL
FT                 VPKDKHVNILTIPKKTTAFIQPLDVFGFRIWKNFVRSFSDSVIINNYDINL
FT                 HLRNNIIKLQSLTHNQLSSPRFRNLFRYSWYKSGYLSTRPEKFHNPIDYCY
FT                 FKEEKRIPKCSICGKMAFIRCAWCKQYFCFEHFFEQYHYCNNYIE"
XX
SQ   Sequence 4187 BP; 1511 A; 591 C; 633 G; 1451 T; 1 other;
     caagggacat tcggcaacgc ggaaattcaa aaaaatctga aactctgcat aattgtagag        60
     cagatatacc taataacaaa acaatttttc gttggtgccc aaaaacggtt ttaagggtgg       120
     aaacaacccc ttgaacaaag ttgatttttg tctttctaag cgaatattat cgaaactatt       180
     aaagatatga aaaaatgttt tagacaaaag ttttatggtt ttaaaagtac tttattatgc       240
     tatatttaga ttttttaaaa atgtaagatt gtntataaaa tgtaaaattg tgtataaaat       300
     accccccctc cttctctttt ttcaaattgt taaaatcaat tgtccaacca aaataaagct       360
     tattttatga caaattcaac catatataat aacattatgt ttggaaaagg caatattgaa       420
     aaaaaaatta aacatgctct tatatgtatg ctacgcgtac caaacttaag gattcgctac       480
     ttgacgatgg catttctttc ttcctcaaat cttcctcata attgcaaact gtaaaagata       540
     aggaaggaag aaaatagaaa atctaaaaaa gcaataaagt tgatgttaag aagtaagtag       600
     gagaaaaata gcatgataag gatacagtca ctaatattta aaaatgttat aaattataaa       660
     atttcacgta atagacgttt attttgccaa cattgcggct acctttttca ttaatttaaa       720
     cgacacgcgt aaatataaat aaatatgtgt gtgtgtgtat gtgtgttttt gtacgtgcgc       780
     acgtgtgtgt acatcatggc aacatgcaaa acacttgtca caagttttat gactgtgcga       840
     ccaaaatagc actctttatc aagtacagtg caatcaaggt tcattatatt gacatatgtt       900
     atcttcattc atttgcatat aaaagctgtc cattttggaa tacatttcag tgttattgaa       960
     gcagttattg aagcagtacg tatattatta ttgctgtgag aaatgtttaa ttaaaatatc      1020
     cttaagattt gtatcataat gtcagtaata aatccagcta atgttattaa tttgttaatt      1080
     gcgacatttc atttcacaaa tattgcaata actcctgtta atcatcaaga ggtggaactc      1140
     catgatacaa ttactgattt aataaagagt gctatacatc acgatattac gatcgaacat      1200
     gagtggggac ttgattttga cgatccatca gaaccgcatg acgtacaatt tgtagatgtg      1260
     tacgatattg atgctgaaga agataattat ggaaatgaag tttgcactgt ggatgatgaa      1320
     ggtggaaatg taaacttaaa ttataagaaa aaggcaatcg aattttggaa gagtggaaag      1380
     aaaggacatt tatctcttac ttctgtacaa catcgtttta gaaaagtaaa gtttaattaa      1440
     aaaataagaa gaataatata tagtaaaata cttgaggctt ttacggtgta cagtgaccgg      1500
     cagtgattcg ttccgcgaca gagagaactc tatttcccct ctcgcggaac gcatcattgt      1560
     cggtcattgt acatacagct ttgactataa gtataaagca tcccaaaaaa tttatttaaa      1620
     ttgtgtaaca aaaacatact atatgaatat atggagaaca taatatagta tacgagtata      1680
     tggaaaaata atataataaa aaaatataat ataagaatat gtggaaaata atatttattt      1740
     tacaatattt attgtaatat aatataatat taatataata taaattataa tataaatata      1800
     atatacataa atataatata cacattatat tataaaatat taatataata tttattgtaa      1860
     agagattata tatttactat gagtatatgc attgatttct aggaaaatac aatgagttag      1920
     agatgcttta tacttatgac caaagctgta aattatatag ttagagtcgc gttgtttttt      1980
     attttaagtt ttacaatttg atgtttcgtg aacatttaat tcgtatataa cttcttttat      2040
     ttttgaattc gaattgttta atattgagat ttgttttctt ctaggtaaaa tctattcaac      2100
     aattgcacag atggcaagaa catgtaatgc gtgggggttc aaatacagac aaacttgtag      2160
     ttattgctga atatgttctt ataaaattcc aagaagctgt taatagagga cttattattc      2220
     atgatataaa tctgcgaaaa tgggcactag aagcaaagga acaagtggat ttttcttcat      2280
     ttaaagcagg aaattggtgg atatggaatt ttaaaaaggc acatcgtatt acatcacgta      2340
     aaataactgc atttaaaacg cggtcttctc atttaactga tctaactata cgtcaaaacg      2400
     ctgaggaatt tgtaaataca gtaaagccac atattaatgt aatcggtgct gaatcaactt      2460
     ataatgcgga cgaaagtggc tttaatttag aaatacatgc aggaagaaca ttagctaatg      2520
     taggagtgaa gacagttgga gctactatcc aatctttatc tgctatgact catagctaca      2580
     ccattatgcc tattatatct gcagatggac atctcctttc gcctttgtat atagtattaa      2640
     aagaatctac tggtgttttt ggaccacaag tagaacaaac tctttttaga ccagtgaata      2700
     tttacattgc ggcttcaaaa tcagggaaat tgacaactga acatttcaaa aattggttcc      2760
     aagaagtgta tctaccaaac actggagaga aaagtatact actgcttgat tcatggacag      2820
     gacattgccc gaaccaattg gaagaacttg taccaaaaga caaacatgta aatattctaa      2880
     caataccaaa aaaaacaact gcttttatac agccattaga tgtttttggt ttcagaatct      2940
     ggaaaaattt tgttcgaagc ttttctgata gtgttattat aaataattat gacataaatt      3000
     tacatttacg taataacata ataaaattgc aatctttaac acacaatcaa ctgtcttctc      3060
     caagatttcg aaatttattt agatatagct ggtataaaag tggttattta tcaacacggc      3120
     ctgaaaaatt tcataatcca atcgattatt gttattttaa agaagaaaaa cgtataccaa      3180
     aatgtagcat ttgtggtaaa atggctttta tacgttgtgc atggtgcaag caatattttt      3240
     gttttgaaca tttctttgag caatatcatt attgtaataa ttatatagaa taaataatat      3300
     tttactgtcc tcaattcctg taaaatttgt atatattata atccatacca aaatataaga      3360
     tatctttcac tcgaatatct atatcgacta cttaattaat aaaacctata tactgaatga      3420
     agcaaaacac atacacacaa atgtacactg aataaattta taaattatat ttttcattat      3480
     taaatccgtg tgtgttctcc ttttttcttc atatcattca tttccttatt tgttctttac      3540
     aattgaattt aaaagattat ctatattagg gttatataca ctctctctgc gtcctcctta      3600
     tcatgctgtt cttcttcaac ttacttctta acatcaactt tattcttttc ttagattacc      3660
     tgtttttatt ccttccttac cttttacagt cagtaattat gagggagaaa gaaatgccat      3720
     cgtcaagcag cgaacccata agtttggtac gcgtagcata tatataagag catttttaat      3780
     ttttttttca atattgcctt ttccaaacat aatgttatta tatatggttg aatttgtcat      3840
     aaaataagct ttattttggt tggacaattg attttaacaa tttgaaaaaa gagaaggagg      3900
     gggggtattt tatacacaat tttacatttt taaaaaatct aaatatagca taataaagta      3960
     cttttaaaac cataaaactt ttgtctaaaa cattttttca tatctttaat agtttcgata      4020
     atattcgctt agaaagacaa aaatcaactt tgttcaaggg gttgtttcca cccttaaaac      4080
     cgtttttggg caccaacgaa aaattgtttt gttattaggt atatctgctc tacaattatg      4140
     cagagtttca gatttttttg aatttccgcg ttgccgaatg tcccttg                    4187
//
ID   Mariner3-3_LMi repbase;    DNA;    INV; 3161 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3161
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3280-3280 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(678..1520,1462..2586)
FT                 /product="Mariner3-3_LMi_1p"
FT                 /translation="MIEAGPSHETSSEMDVCDEQSKGELTNALKYAECLLR
FT                 NWNLLTDTPPSMISGTSLAMGEEIANEILHMLADRQVVHVEELIGVDEIDE
FT                 HHEYTSVSIVFISVTLTHLFWFFKLQVAIPQSFTLQCKGVQEDDDECVAEE
FT                 FTPVPKDYIPLWYKERAVALAAAHPKWSLKSLQANGCSRLKHKKHLYRWKD
FT                 DVKRGGTNVDKWTTIDQETYERFLEARQNLEQVIYCIAEVFRRQIIVTIPT
FT                 ITTQGLYESHMQLITIYSFLGDDEDSATVGDDCCDPVCFGVTTRTLQQWAM
FT                 TAAIPYVSDNFQFVASSMWVERFKKKHGIKQRKITKFISSREYATMDDVLA
FT                 AAEQFRIQTRLIIPNFDPDYVINTDQTGCQYQFTYNRTLTEKGVKSVLVKK
FT                 RDLNKISHSYSAQYALTASGKIVPYVFLCMQEVTGKFGPIVKTSVDALSER
FT                 FKNVIVTCTKSGKFTKQLYETFLKGVISPYVGQKKFLLIIDSWSGQTDQTL
FT                 YDSIFVDETKACTCTIKVIPPKCTPLCQPCDVYFYRQVKLFIKRLQHAPEL
FT                 LTANREIASREDSIRIHSLLLHQFSAPVFVPMIKYAWFASQLIDDRTLFLN
FT                 VNDQCFPVSLMKTPCACKAVAFIRCAWCYNVLCFRCFYDNYHPEFCTGVKD
FT                 SDDGDSE"
XX
SQ   Sequence 3161 BP; 940 A; 615 C; 680 G; 926 T; 0 other;
     caaggggaac accaagtatg gtaccaacgg aatttgatgg gtcgtaggta tgttgtgagg        60
     gaattcctcc agaccatcaa gctaaaagga tttgttccaa tgggccttga tttctaagaa       120
     aatcgaaatc aaattcgcag caaattacca cgcgtaacgt gtctacttat acatggcggt       180
     taccgctcag cgagacagcg tggtgtaatc ggcaagatgc gaggctgcca tgcaggcgac       240
     ctgggttcaa gtccgacatg ggtcaattac ttttcacacc tgtccgatga ttgtgcataa       300
     ttatgtattt ttataaccat tcttatgtaa acgtttgcag taaatggtca ggataaaaac       360
     atgtaacatt cgctcaatat gttatgtatt gcgcgacgat tattttattc attttgtttt       420
     ttcgaagcac acttttaagg cgattgaagc atatttcgaa atcagtaaac agtcttttgt       480
     taatacctat aatatttggg caacatttaa tacctatgtt tacagttcct gaccgtgctg       540
     tttttatctc ctcctatgac gtgtgtaccc acgtgacgcg tcccagtgga ctattatgct       600
     acggccagtc ggttagtcat tcgtagcgtg tcgttcatgc gtgcggcaag tagtgcaacg       660
     tggagaacaa atgcgctatg atagaagcag gcccatcaca cgaaacctct tcggaaatgg       720
     atgtgtgtga tgagcagtca aaaggtgaac tcactaacgc cttaaaatac gccgaatgtt       780
     tgcttcgcaa ttggaatctg ctcacagaca caccgccaag catgatatcc ggaacgtccc       840
     ttgcaatggg cgaagagatt gccaatgaaa tacttcacat gttggcagac agacaagtag       900
     ttcacgttga ggaactcata ggtgtcgacg agatagatga acaccacgag tatacatcgg       960
     taagtattgt ttttattagc gttacgttga cgcatttgtt ttggtttttc aaattgcaag      1020
     tggcaattcc acaatccttt acattgcagt gcaagggtgt acaggaagat gacgatgagt      1080
     gtgttgccga ggaattcacg ccagtgccga aagattacat tcctttgtgg tacaaagaaa      1140
     gagcagtcgc tcttgcagca gctcatccaa aatggagctt aaaatcattg caagcgaacg      1200
     gatgttctcg cttgaaacat aaaaaacatc tttatcgttg gaaagacgac gtcaaaagag      1260
     gaggaacgaa tgtggataaa tggaccacta tagatcagga aacctacgaa cgattcctgg      1320
     aagctcggca gaacttggag caggtaatat attgtatagc agaggtattt cgcagacaaa      1380
     ttattgttac gataccaacg ataacaactc aaggattata tgagtcccat atgcaactaa      1440
     taacgattta ttcattttta ggtgacgacg aggactctgc aacagtgggc gatgactgct      1500
     gcgatcccgt atgtttcgga taattttcag ttcgtagcca gctcgatgtg ggtggaacgt      1560
     tttaaaaaga aacacgggat caaacagcgt aagattacga aatttatcag ctcaagagag      1620
     tacgccacaa tggacgatgt attggcagct gcagagcagt tccggatcca aacgcgactc      1680
     atcatcccta atttcgaccc tgattatgtt ataaatacag atcaaactgg atgccagtat      1740
     caattcacgt acaatagaac gcttacagag aaaggggtta aatctgttct tgtcaaaaaa      1800
     cgagatttaa acaaaattag ccactcatac tcggcgcagt atgctttaac tgcatcagga      1860
     aaaatcgtgc catacgtgtt tttatgtatg caggaagtaa caggtaaatt tggtccgatt      1920
     gttaaaacaa gtgttgacgc gttgagtgaa agattcaaaa acgtgattgt gacctgcaca      1980
     aaatctggaa agtttacgaa gcaactctac gaaacattct tgaaaggtgt tatttcgccg      2040
     tacgtgggtc agaagaaatt tcttttaatt atcgattcat ggagtgggca aactgaccag      2100
     acactgtacg atagtatctt cgttgacgaa acaaaagcgt gcacttgcac tattaaagtt      2160
     attccaccca agtgtacccc gctgtgccaa ccatgcgatg tgtattttta ccgtcaggta      2220
     aaacttttca ttaaaagact acaacatgct cctgaattat taacagctaa tcgcgaaatc      2280
     gcttcacgag aagactcgat tcgaatacat tcattactgt tgcatcagtt cagcgcacca      2340
     gtcttcgttc ccatgattaa atatgcctgg tttgcgtcgc aattaattga cgaccgaaca      2400
     ttgtttttga atgtgaacga ccagtgtttt ccagtatcgc tgatgaaaac accttgcgcc      2460
     tgtaaagcgg tagcatttat tagatgtgcg tggtgctaca atgttctgtg ttttcggtgc      2520
     ttctatgaca attatcaccc agaattttgt acaggtgtta aagatagtga cgatggcgac      2580
     agtgagtaaa taacactgcg caataagtaa aataatcagt tgctactgtg ttatttgcta      2640
     ttatcctgac tgtttactca agctgtaaca taggagtggg tataaaggca tataattatg      2700
     cacaataaaa gaagagaaat gaagaaaagt gaaaaataaa tgacccgaag gggaagattt      2760
     ttttattttc ttggttattt ttttaatcgt ttgacttttc attatttttg tttttctttc      2820
     tttatatctt tttctttgct taattatttt taattttttt taaataaaaa gtagcaatta      2880
     caatttttaa aaattgttct gccgctaggt atcgaacccg ggtctcctgc atgggagcct      2940
     agcaccttgc cgattacacc acgctgtctc gctgagcggt aaccgccatg tataagtaga      3000
     cacgttacgc gtggtaattt gctgcgaatt tgatctcgat tttcttagaa atcaaggccc      3060
     attggaataa atccttttag gttgatggtc tggaggaatt ccctcacaac atacctgcga      3120
     cccatcaaaa tccgttggta ccatacttgg tgttcccctt g                          3161
//
ID   Mariner3-4N1_LMi repbase;    DNA;    INV; 1005 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-4N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1005
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3281-3281 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1005 BP; 305 A; 212 C; 193 G; 295 T; 0 other;
     caaggggagg ccgccaattg tgaaattcag attcgattca tactgcgcat aatgaaagct        60
     catggccaga ggtgtaattt ggcaaagcac caagatgcac ttctcagccg ttgtcgagaa       120
     aatcgacaat taaaaaaaag ccgttgcggt gaaatactct ctacgattag taatattgta       180
     cagaggcgtg gcgtagcggt aagcgctcgg gttcgtaatc cgaaggtcgc cggatcgaat       240
     ctcgcggcat gcaacttttt tttattattt gttttttgta attcaaatgt acacacacac       300
     acacacacac acacataaag acaataacat ttgatgttcg aagtcgccag tttttccacg       360
     acaaacgact ttcaaacaac ttattatatg caactggcga cttcgaacat cattatgttt       420
     tccgcaaaca aagttgtatt tcacaaatgt tattaattgt cttcataatg tttaccacgt       480
     atagttaacg gaagaagtat aaacgatatt ccgaaacgaa tacgtatagt gtaagtcaaa       540
     cctgacgaac gatagaacaa tttttcagaa tgtcaatcag gtgtgtttcc caacagataa       600
     tttaaaaaac aattgttctt gtaaaaacgc atcgtttatc agatgtgctc gatgtcgtgc       660
     tgttttctgc tttccatatt tctatgataa ctatcactct ggttcgtgcg atatatataa       720
     ttacaaaaca aataataaaa aagttgcatg ccgcgagatt cgatccggcg accttcggat       780
     tacgaacccg agcgcttacc gctacgccac gcctctgtac aatattacta atcgtagaga       840
     tcgtagagag tatttcaccg caacggcttt ttttaattgt cgattttctc gacaacggct       900
     gagaagtgca tcttggtgct ttgccaaatt acacctctgg ccatgagctt tcattatgcg       960
     cagtatgaat cgaatctgaa tttcacaatt ggcggcctcc ccttg                      1005
//
ID   Mariner3-4_HSal repbase;    DNA;    INV; 2528 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-4_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2528
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1002-1002 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. The 5' terminal sequences before the
CC   polyN is predicated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(371..847,816..1499)
FT                 /product="Mariner3-4_HSal_1p"
FT                 /note="DDE-transposase (partial)."
FT                 /translation="HSWIARFKKSHRIVSRKVTKFITRRTLEDSVDLQKSA
FT                 DDFLETVKPLIEQFGSENIYNSDQSGFQLEIHSGRSLSNQEEKKVERVVQS
FT                 ISSTTHSYTIQPIISCNGNLLSPLFIVLKEASVGKFGPRVEENLFKPENVI
FT                 VKASKSGKMTSGIFFSNYFLHQVFSFLTIFFNKLISFYNLIRVIKTIISFI
FT                 FFTDHFKMWLEEAYFANIGPNSVLLIDSWTGHCPNTISDLTPPGTHITTMI
FT                 IPKGTTGKIQPLDVYGFRIWKNFAKRFSDMVLLLESNINLHERNNIIKLQS
FT                 LIHNQLSSPRYQNLFKYSWFKSGYTNERPEEFENPVKFSFDETSTKCDIEG
FT                 CNNIAVVRCSWCKKSLCLKHFFVEYHYCNVYNDKCKCNINVYNE"
XX
SQ   Sequence 2528 BP; 977 A; 297 C; 350 G; 885 T; 19 other;
     acaagggaca tgtcacaact gtccggaacc gatttgattc tccttcaaat atgttgttaa        60
     atacacaaat ctaaaagaca cgtatttttt tatatgtgcg aatattgagt tttaaagggt       120
     gaaacacccc tttaaagaaa aacggtattt ttctttagaa tcgaatatct gctaaactat       180
     aagcgataga aaaaaaacat gtaatgaaaa tttaatcgct tgaagaatac tttaaagtta       240
     tatgaacaaa aattttttat ttttattttt tttaagaacc cccaccactt aatttttttt       300
     gcaaaataaa aaaaattttt tttacctaat ttaaagctta tttttttcca nnnnnnnnnn       360
     nnnnnnnnnt cacagttgga tagcaagatt caagaagtct caccgaattg tttcaagaaa       420
     agttacgaag tttatcacta gaagaacatt agaagattct gttgatttgc aaaaatcagc       480
     tgatgatttt ctggaaacag taaaacctct tattgaacaa tttggatctg aaaatattta       540
     caattcagat caaagtggtt tccaattgga aattcattct ggaagatcat tgtctaacca       600
     ggaagaaaag aaagtagaac gtgtcgtgca atctatatca tcaacaaccc attcatatac       660
     gatacaacca ataatatcct gtaatggcaa tttgttgtca cctttattta ttgtattaaa       720
     agaagctagt gtaggtaaat ttggaccaag agtagaagaa aatttattta aaccagaaaa       780
     tgtcattgta aaagcatcga aatctggtaa aatgacatca ggtattttct tttctaacta       840
     ttttctttaa caaacttatt tcattttata atttaataag agttataaaa actattatat       900
     catttatatt ttttacagat cattttaaaa tgtggttaga agaagcttat tttgcaaaca       960
     ttggtcctaa tagcgttctt cttatcgatt catggactgg acattgcccc aatactattt      1020
     cggatttaac ccctccagga acacatatta ctactatgat aataccgaaa ggaactacag      1080
     ggaaaataca accattagat gtttatggat tcagaatttg gaaaaatttt gctaaaagat      1140
     tttcagatat ggttttattg ttggaaagta atataaattt acatgaacga aataatataa      1200
     taaaattgca atctttgata cataatcaat tatcatcccc acgatatcaa aacttattta      1260
     aatattcgtg gtttaaaagt ggttatacga atgaaagacc agaagaattt gaaaatccag      1320
     taaaatttag ttttgacgaa acatcaacaa aatgtgatat tgaaggttgc aataatatag      1380
     ctgtagtaag atgttcttgg tgcaagaaat cattatgctt aaaacatttt tttgtcgaat      1440
     atcattattg taatgtgtat aatgataaat gtaaatgtaa tattaatgtg tataatgagt      1500
     aaataatata aaatgtaaat aaattcattg tgtaaataac aaataaacaa aatgtaagat      1560
     gtaagaacaa aaataattgt aagagaaaaa attataaaac gttattcaaa aatataatgt      1620
     gtaaagatga ataacagatt tgattatata acgaaaagac agtgtgtgtt gactgtgagt      1680
     attagattgc tacatgaaaa aatttatact gttaacatat ctggaacacg tacacataat      1740
     cttatcttaa ttttttaacg taagatataa attgtttatg ccaactattg cgacatgtat      1800
     attttcaaga ttcaattgta aaataatttt attataagta ggtaatttta gaataaaatt      1860
     gtttttaatt tttatagaag aaattaaatg ttaaagaaat aataagagag ctggggatat      1920
     atttaaaaaa ttcttattaa tttaaatttt ttaaaattat taaaaaattt ttttacaatt      1980
     ctaaatatac acaatatgca gttataaata catagaaaac atagataaaa attttacata      2040
     aacatttttc atatatctta ttgtttcggc gataatgact tacacacata gtacggataa      2100
     gcgtatatat ggaagcgttt ataattaatt ttcgagaatg atatctcgta acataacttt      2160
     atcatatatg gttgaatttg gaaaaaaata agctttaaat taggtaaaaa aaattttttt      2220
     tattttgcaa aaaaaattaa gtggtggggg ttcttaaaaa aaataaaaat aaaaaatttt      2280
     tgttcatata actttaaagt attcttcaag cgattaaatt ttcattacat gttttttttc      2340
     tatcgcttat agtttagcag atattcgatt ctaaagaaaa ataccgtttt tctttaaagg      2400
     ggtgtttcac cctttaaaac tcaatattcg cacatataaa aaaatacgtg tcttttagat      2460
     ttgtgtattt aacaacatat ttgaaggaga atcaaatcgg ttccggacag ttgtgacatg      2520
     tcccttgt                                                               2528
//
ID   Mariner3-4_LMi repbase;    DNA;    INV; 3031 BP.
XX
AC   .
XX
DT   30-APR-2014 (Rel. 19.12, Created)
DT   30-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3031
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3282-3282 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(748..1149,1016..1621,1676..2575)
FT                 /product="Mariner3-4_LMi_1p"
FT                 /translation="MEVVQLESDPGPSHESDVIEEDSIHSEVAKQQLKDAL
FT                 VYFESLLRNSNLIAAEPSSSINEEAMVIGEEMFQNTLQMLAEKTLVHDEEL
FT                 IDINEIDDNNAYEDVETSLIANESSDEYEPDEKKKRVRLYFSGLQNTLMKS
FT                 TIIMPTKTLKRVSLPTNHQTNTSRTRRKKGYDYISLDYKIRAVNLAKEHPG
FT                 WSLKTLQKRGCSRLTNMSYLSRWEEQIKSGGSKFDKYCTIDSWVHDRFVEA
FT                 RQNFQQVTTRNLQQWALGAASQFPDFKFKASKTWVTEFKKKHGIRQRKITK
FT                 CVSRKETATQDEILAAADTFRIQTRTLITNFDKDFIINTDQTGTYMIDNTD
FT                 FLYKRYFYILFVRCQYQSTFNRTLAEKGSKAVLVTRHDMNKVTHSYTAQYS
FT                 ITMSGRVLPLVFVCLQESTGTFGPRVQKTVDEYAKKYTDVVITSSKSGKLT
FT                 TGLFMDFLRNALKPYVQKKEFLLLIDSWGGQTNPELYDEMFQDDKKLPTCT
FT                 IKVIPPKCTPLVQPCDVYFYRQVKNLIKRLQNCAFLIRNRDINSREDCIKI
FT                 QSIVHHQLSSPIFADMIRYAWYASNLTNDRTIFQNVNQVCFPTDNLKNNCS
FT                 CKNASFIRCARCRAVFCFPCFYDNYHSGSCDTPATSVH"
XX
SQ   Sequence 3031 BP; 958 A; 615 C; 625 G; 831 T; 2 other;
     caaggggagg ccgccaattg tgaaattcag attcgattca tactgcgcat aataaaagct        60
     catggccaga ggtgtaattt ggcaaagcac saagatgcac ttctcagccg ttgtcgagaa       120
     aatcgacaat taaaaaaaam cgttgcggtg aaatactctc tacgattaat aattttctac       180
     agcggcgtgg cgcagcggta agcgctcggg ttcgtaatcc gaaggtcgcc ggatcgaatc       240
     tcgcggcatg caactttttt ttattatttt tttgtttata atatataata ttcccggcaa       300
     tcagtttcaa caattatgca tataataagt tgtttgaaag tcgtttgtcg tggaaaaact       360
     agcgacttcg aacatcatta tgttttccgc aaacaaagtt gtatttcaca aatgttatta       420
     attgtcttca taatgtttac actatagtta acggaagaag tataaacgat attccgaaac       480
     aatacgtata gtgtaagtca aacgttcgaa ttagaataga gactccacga acacaaattt       540
     gctgtggcag gtatgaaata taaactccgt tactcgctgt tacacttgaa ggacagatgt       600
     tgaatgggcc gaaacgagcc gccgcataac agcgtagttg cctgctaact tcgaaagaag       660
     gtagatgcgg tccctagcgc aacttataac atcgtcgaaa atcatgcgta cgtgagagtt       720
     ttgttacacc ctgttaaaaa acgaaaaatg gaggtggtac aattggagag cgatccgggc       780
     ccttcgcatg aaagtgatgt gatcgaagaa gattctatac acagtgaagt ggcgaaacaa       840
     caattgaaag atgcgttggt gtattttgaa agcctccttc gtaacagtaa tctcatcgca       900
     gcagaaccgt catcatcaat caacgaagaa gccatggtaa ttggggaaga aatgttccag       960
     aatacgctgc aaatgctcgc cgaaaaaacc ctcgttcatg atgaggaact gatagacatt      1020
     aatgaaatcg acgataataa tgcctacgaa gacgttgaaa cgagtctcat tgccaacgaa      1080
     tcatcagacg aatacgagcc ggacgagaag aaaaaaaggg tacgactata tttctctgga      1140
     ttacaaaatt agagctgtca atctggccaa agaacatcca ggctggagtc tcaaaactct      1200
     acaaaaaagg gggtgctctc gtttgacaaa tatgagctat ttatccaggt gggaagagca      1260
     aatcaaaagt ggcggtagca aatttgataa atattgtacc atcgattcat gggtgcatga      1320
     tcgcttcgta gaagctcgac aaaacttcca gcaagttact accagaaacc tgcagcagtg      1380
     ggccttgggc gctgcaagtc agttcccaga tttcaaattc aaagcttcaa aaacatgggt      1440
     caccgaattt aaaaagaagc atgggattcg gcaacggaaa atcacaaaat gtgtttcccg      1500
     gaaagagacg gctacccaag acgaaatttt ggccgcagcg gacacatttc ggatccagac      1560
     gcgaacgttg ataactaact tcgacaaaga tttcataatt aatactgatc aaacaggtac      1620
     gtaaagagct gttcacaaat gtcatatgac atgatgatag aatatgataa tatgatatat      1680
     gatagacaac acagatttct tatataaacg atatttttat attttgtttg tcaggtgcca      1740
     gtaccagtcc acgttcaaca gaactctcgc cgaaaaaggg tcaaaggctg tcctggtaac      1800
     ccgacacgac atgaacaagg tgacgcattc gtatacggca caatattcaa tcacgatgtc      1860
     tggacgagtc ttgcctcttg ttttcgtatg cctccaagag tccacaggta cgtttggacc      1920
     cagagtacag aagacagtcg acgagtacgc caagaagtat accgacgttg ttattacatc      1980
     ctccaaatcc ggtaaactaa caacgggttt gttcatggac ttcttgcgta atgctttgaa      2040
     accatacgta caaaagaaag aatttctcct tctgatcgac tcttggggtg ggcaaacgaa      2100
     cccggagtta tacgatgaga tgttccagga cgataagaag ttaccaacgt gcactataaa      2160
     agtcattcct ccaaagtgca ctcctctcgt ccaaccgtgt gacgtgtatt tttaccggca      2220
     ggtaaaaaat ttgatcaagc gccttcaaaa ttgtgctttt ttaatcagga accgtgacat      2280
     caactccaga gaggattgta taaaaatcca atccatcgtc caccaccaat tgtcttctcc      2340
     gatttttgcc gatatgatac gatacgcgtg gtatgcatca aacctgacga acgatagaac      2400
     aatttttcag aatgtcaatc aggtgtgttt cccaacagat aatttaaaaa acaattgttc      2460
     ttgtaaaaac gcatcgttta tcagatgtgc tcgatgtcgt gctgttttct gctttccatg      2520
     tttctatgat aactatcact ctggttcgtg cgatactcca gctacttctg ttcactaatt      2580
     gttaattatg tgcgagtgta taccgaactt ttcaataaat tgtatccact tgaatattat      2640
     ttgtgatatt gtgttttatt tcaagtatta tttgtccacg acaaacgact ttcaaacaac      2700
     ttattatatg cataattgtt gaaactgatt gccgggaatt atatatatat aataaacaaa      2760
     aacaaataat aaaaaagttg catgccgcga gattcgatcc ggcgaccttc ggattacgaa      2820
     cccgagcgct taccgctgcg ccacgccgct gtagaaaatt ttattaatcg tagagagtat      2880
     ttcaccgcaa cggttttttt aattgtcgat tttctcgaca acggctgaga agtgcatctt      2940
     ggtgctttgc caaattacac ctctggccat gagcttttat tatgcgcagt atgaatcgaa      3000
     tctgaatttc acaattggcg gcctcccctt g                                     3031
//
ID   Mariner3-5_LMi repbase;    DNA;    INV; 3274 BP.
XX
AC   .
XX
DT   01-MAY-2014 (Rel. 19.12, Created)
DT   01-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3274
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3283-3283 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1088..1366,1288..2103,2025..2603,2564..2827)
FT                 /product="Mariner3-5_LMi_1p"
FT                 /translation="MHYQCTTGSRQFRFSRSRLIGAAIVERFLELTNEMTF
FT                 VDTEVLYHEDEAEGDSVEDITTSESQNGHNTLEISTSQGICASSVPMSITN
FT                 RLLNDHFGNLHVTGNMCFICPDEYYEPVTKRLNYGAIPLEVKVKAVALARN
FT                 HPNWNLQTLQKNGATTALKRKKDLKLWESDIVKGGTRYDKYQAINKWTYDR
FT                 FVESRRRNENVTTRILQEWAAGAALQYTANKDFTFAASLSWARNFKSEYKI
FT                 RQRHVTKYVSHKEVQNIEDIQKVAALFSTQTASLMTGFNRDYVINTDQTGC
FT                 EYRVNIRRTLSHKGEKRTLVAVGSKNKLTHSYTAQYAITASGKVLPKVFLC
FT                 LQETNVTFGPRVIEEVNRLTDSGFPVFTRNECYIWSSGYRRGQSLNRLLKN
FT                 VYITCSKSGKLTNAIYRTFLENVLKPYVSDNKFCLILDSWSGQINTPMYDT
FT                 MFIDGEGQPTCTVKVIPPNCTPVCQPCDVYFYRQVKNFISRLQNCSVLLET
FT                 QRELHNRTDAITIHSIIHNQLSAPIFQAMISYAWYASKLIPEKDIFKCKPS
FT                 LFSADSSEGTMTKFVFRRLFGRNNVAVERLHSLDVLGAVSIFVSNVYMTST
FT                 IHLVVRRKVRTRNSDWKSHCKVTWSNILVVYYPKRFEKFICYLFIIPY"
XX
SQ   Sequence 3274 BP; 968 A; 665 C; 741 G; 900 T; 0 other;
     caaggggaag gcctcagaca cggccaaccg attcggctca aatttggcag gtcgcttttg        60
     tacaacctaa aacgaaggaa tctaaatatt ttgggtcaac acccccgcgt ttttgagaaa       120
     atcaccccta aaggttatga cgagcaatcg actcaaaatt ggagggatcg atagataatt       180
     gtaaatagag catttttcat catcaggtat gggtccgcaa acgcatactt ttccgaaatc       240
     gaggaaagaa acttttacaa ctgccgcttc tgtacccaca tggtaaacgc ttttcgccga       300
     cagcgcgtag cgcaacggcc aaggtaactg gctgggaatc ggagaacccg ggttcgaatc       360
     tcgaagaaac ctagcggatg ttattcttct cgtttgtatt tttccatatc tcacttgata       420
     gggataggag ggttaataag gtaagtaaat caataaggaa tgataataat aaggtaggca       480
     aactaatttc ccaaacgccg tgagttagta aagtattaaa cttttaagcc ttgtcacatg       540
     aaaacaactc cgagtaagag tgctgcgaat tcctcatgag ggatcacaga tagccaaccg       600
     cgcgacgctt gtttacagcg aggcacggga cagaatgcac gcggggagag ttatgttgtc       660
     ccggttgcct cttcgtcata tcatagttgt gaacctggaa gagtgaaggt gtccagcacg       720
     agccttatag aagtcaatcg gaaagagttg ttttccgtca ttaggctgcc gcgaacctcg       780
     cggatacatg tagtgatttt tccatcttta ggcctgttaa tgcgccgaat gaaatacgtt       840
     ttgtgaatga atacagtgtt cttccgtaag taacatgacg tgtactgtat gtagtttgta       900
     gtaattagct cttctgttta tgctagttat tgtttgttgt gtcatatctt tcaggtgcat       960
     aatctgaata atgaggatgt acacccttcg actagtgctg taatatatag ttgggagcct      1020
     gtcacagaca cggcaagcgg gaagttaccg acgctgtgtt ttggtttgta aaagtgttgc      1080
     aagacagatg cattatcaat gcactaccgg aagcaggcag ttccgtttct cgcgttccag      1140
     attgatagga gcggctatcg tcgagcgatt tttggagctg acgaacgaaa tgacttttgt      1200
     tgatactgaa gtactatacc atgaagacga agcagaaggt gattcagtgg aagatatcac      1260
     gactagtgaa tcgcaaaatg gtcataacac tttggaaatc tccacgtcac agggaatatg      1320
     tgcttcatct gtcccgatga gtattacgaa ccggttacta aacgattgaa ctacggcgct      1380
     ataccccttg aagtaaaagt aaaggcggta gcgctagcca ggaatcatcc aaattggaac      1440
     ttacaaacac tgcaaaagaa tggagcaaca acagccctga aaaggaagaa ggacttgaaa      1500
     ttgtgggaaa gtgatatcgt taaaggaggg acaagatacg acaaatacca ggcgataaat      1560
     aagtggacat acgaccgatt tgtcgaatct cgtcgtcgta acgagaatgt aacaacgagg      1620
     atacttcagg agtgggctgc aggtgcagcg cttcaatata cggccaacaa ggattttacg      1680
     tttgctgcat cattatcttg ggcacggaat ttcaaatcgg agtataaaat tcgtcaacgg      1740
     cacgtcacta aatacgtctc tcataaggag gtacaaaata tagaagatat acagaaagtg      1800
     gcggctcttt tcagcacgca aacggcgtca cttatgaccg gttttaatcg tgattacgtg      1860
     atcaacaccg atcaaacagg atgcgagtat cgggtgaaca ttcgacgcac gttatcgcat      1920
     aagggagaaa aacgaaccct tgtcgcagtt ggtagtaaaa acaaactaac acattcgtac      1980
     acggcgcaat atgccatcac agcctctgga aaagtgttgc ctaaggtttt cctgtgttta      2040
     caagaaacga atgttacatt tggtcctcgg gttatagaag aggtcaatcg cttaaccgac      2100
     tcttgaaaaa tgtttacatt acctgctcca aatccgggaa actgacaaat gcgatttaca      2160
     gaacatttct tgagaatgtt ttaaaaccat acgtttctga taacaagttt tgtctaatat      2220
     tggattcctg gagtggacaa attaatactc caatgtatga cacaatgttt atagatggcg      2280
     agggtcagcc gacgtgcaca gtaaaagtaa taccgccaaa ctgcacacct gtgtgccagc      2340
     cgtgtgatgt ttatttctat cgccaggtta aaaactttat ttccaggctt cagaattgca      2400
     gtgtgcttct ggaaacccag cgggaattgc acaaccgcac ggatgcaata actattcaca      2460
     gcataattca taaccaactt tcagcaccga tttttcaggc aatgatatcg tatgcgtggt      2520
     acgcatcaaa attaattccc gaaaaagaca tttttaaatg taaaccaagt ttgttttccg      2580
     ccgactcttc ggaaggaaca atgtagctgt cgaaagattg cattcattag atgttcttgg      2640
     tgccgtgagt atatttgttt cgaatgttta tatgaccagt accatccatc tagttgttcg      2700
     aagaaaagtg aggacacgta acagtgactg gaagagccat tgtaaagtga cctggagtaa      2760
     cattttagtt gtttactatc ccaagaggtt tgagaaattt atttgctacc tttttatcat      2820
     tccttattga tttacttacc ttattaaccc tcctatccct atcaagtgag atatggaaaa      2880
     atacaaacga gaagaataac atccgctagg tttcttcgag attcgaaccc gggttctccg      2940
     attcccagcc agttaccttg gccgttgcgc tatcggcgaa aagcgtttac ctgtgggtac      3000
     agaagcggca gttgtaaaag tttctttcct cgatttctgg aaaagtatgc gtttgcggac      3060
     cccatacctg atgatgaaaa atgctctatt tacaattatc tatcgatccc tccaattttg      3120
     agtcgattgc tcgtcataac ctttaggggt gattttctca aaaacgcggg ggtgttgacc      3180
     caaaatatct tagattcctt cgttttaggt tgtacacaag cgacctgcca aatttgagcc      3240
     gaatcggttg gccgtgtctg aggccttccc cttg                                  3274
//
ID   Mariner3-6_LMi repbase;    DNA;    INV; 2971 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 19.12, Created)
DT   02-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2971
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3284-3284 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(641..1030,972..1487,1566..2393)
FT                 /product="Mariner3-6_LMi_1p"
FT                 /translation="MEAEPSTSTGNVCEQSEGGTSDVPDSNEESKGELTNA
FT                 VRYAEILLLDLHLVTSTPPSTISERSKVIGEAICNAILDLLAEKRIVCEDE
FT                 LITVDEKDELQEYTACDSDATVSFTFVRFCHVLVEFEIYKHNVLRSCGFVT
FT                 FWSNLKYINIINVQXEEIDDEDYVCKESSRQASDYVPLSYKQGAVAMATLH
FT                 PKWKLKTLQTKGFARLKSERALVQWKTDVKCGGTHFDKWKSIDEETYDRFV
FT                 EARRNNEQVNLVKYTLYVMSEENWFIRTVSFCTCTGNNEDSAAMGNECSYA
FT                 AHFGELRFLQRIPSIEECMESARRFQAQTKTLIANFDLDNVINTDQTGCQY
FT                 QLFYNRSLAHRGSKDVVVKRRGLNKMTHSYTAQYSLTASGKILPRVFLCMQ
FT                 EPLGKFGPVLQKRITEISDRYKNVVVTCSASGKFTKALYKDFLTCTILPYV
FT                 GQNKFLYIIDSWGGQTDQTVYDSLFVDDSQGSTCTLKIIPPKCTPICQPCD
FT                 VYFYRQLKIFLKKMQNAPELLQSQREIASREDCIRLHSLALHQLSAPVFIP
FT                 MIKHAWIASKLLETGVQGPFSNVNEYASPSL"
XX
SQ   Sequence 2971 BP; 891 A; 610 C; 681 G; 788 T; 1 other;
     caaggggatg accaaacatc tccgacttcg attttgacgg gtctgagata tgttataggg        60
     ggacctcccc tgagtatctg gttaacgtcc taaatgccgc gggccctggt tctcgaaata       120
     gtcgtgtttg attttccctg cacgctacat ataccagtaa cagagcacag accccaaagc       180
     atagcagcgt agcgcagcgg atcaagtaca cggctatcat gctgggggtt ccgtgttcaa       240
     ttcctccacg tgcactttct tttttgtcaa ttttatttta caccatgttt acaaatatat       300
     tccgtgtcat gcaatattgt tcgcaaataa gtgtttggtc actatatatt tatgtgtttg       360
     taagaagaga atgtacatta tggtcagtat tttaattgtg catttgaaat accgtattgg       420
     tattcgcagg tatatgcagg ttatatacag gtacctgtat acctgaattt catataaggg       480
     aacctttgtt ccccctcccc acagtaccgt cagcatccgt tataacattc cgggtcgtcg       540
     gtcgtactgg ggactggggc cctcccattc gcgtccgtag ccggcacgag tagtttgcag       600
     tatcgcgagc gtatattaga agtaaacacg ttgaacatca atggaagcag agccaagtac       660
     gtctaccgga aatgtgtgtg aacaatcaga aggaggcaca tcagacgtgc cggattctaa       720
     tgaagaatca aaaggtgaac taacaaacgc cgtgagatat gcggagattt tacttctcga       780
     tttacatctc gtgacgagta cgcctccgag cacgatttct gaacgttcaa aggtaattgg       840
     agaagctatc tgcaatgcaa ttctagacct attggcagaa aagcggatcg tctgtgaaga       900
     cgagttaatt accgtcgacg aaaaggacga gttgcaggaa tataccgctt gtgacagtga       960
     cgccacggta agttttacgt tcgtgcggtt ttgtcacgtt ttggtcgaat ttgaaatata      1020
     taaacataat taatgtacag gkagaagaaa tcgacgacga ggactacgtt tgcaaagaat      1080
     cttcacggca ggcatcagat tatgtacctc tatcgtataa acaaggagca gtggctatgg      1140
     caacgcttca cccgaaatgg aaactgaaaa ctctccagac gaagggattc gctcggttaa      1200
     agagcgaaag agctctagtg caatggaaaa cggatgtgaa atgtggagga acgcacttcg      1260
     ataagtggaa gagtatcgac gaagagacgt acgaccgatt cgtcgaagca agacgaaata      1320
     acgagcaggt gaatctcgta aaatatacgc tttatgtaat gtcagaagaa aactggttta      1380
     taagaactgt atcattttgt acatgtacag gtaacaacga ggactctgca gcaatgggca      1440
     atgaatgcag ctatgccgct catttcggag aacttcgctt tttgcagtag tacatcgtgg      1500
     gtcactcgat tcaagagatt gcataagatt cgacaaagga aaatcacgaa atttgtttcc      1560
     tgtaaagaat tccatctata gaagaatgta tggagagtgc gaggaggttt caagcgcaga      1620
     cgaaaacgtt gattgccaac tttgatctgg acaacgtgat caatactgat caaaccgggt      1680
     gccagtacca actattttat aatagatcac ttgcacaccg ggggtccaaa gacgtagttg      1740
     taaaaagaag gggtttgaac aagatgacgc attcttatac ggcacagtat tctctgactg      1800
     catcaggaaa gatattgccc cgggtgttcc tgtgcatgca ggaacccttg gggaaattcg      1860
     gcccggtact gcagaagaga atcaccgaga tatctgatag atataagaat gtcgtagtaa      1920
     catgttcagc atcaggaaaa ttcacaaaag ccctttacaa agacttttta acttgtacga      1980
     tccttccata cgtgggccaa aacaaatttt tgtacattat agactcgtgg ggtgggcaga      2040
     cggatcagac ggtgtacgat tcgctcttcg tggatgattc tcaaggcagc acctgcacct      2100
     tgaaaatcat accaccgaaa tgtactccga tctgccaacc ctgcgatgtc tatttttatc      2160
     ggcagttaaa aatcttccta aagaaaatgc agaacgctcc cgaattgctt caatcacaga      2220
     gggaaatagc gtcacgggag gattgtataa ggctacattc cctggcgcta caccaattga      2280
     gcgctcctgt ctttattccg atgataaaac acgcgtggat cgcgtccaag ttgttggaga      2340
     caggagtaca gggacctttt tcgaacgtga acgagtatgc ttccccgtct ctttaattcg      2400
     aaaaccatgt gcatgccaat cagtatcgtt tatcgtgtgt gcctggtgct cgtcgacatt      2460
     atgttttcat tgtttcttcg acgagtacca tccagaggca tgctctggta cagcgaccaa      2520
     tgaacatgaa taaactaata aaaagaatat attataataa ataatgttta atatttattt      2580
     gattacacat cagtacatca atattaatga acatttaacc ttacaaaata aaaatatcgt      2640
     gacgaaaaca ttattttcga acaatgtgca tgaaaaatat atttgtaaac atcgtgtaaa      2700
     ataaaattga aaaaaggtgc acgtggagga attgaacacg gaacccccag ctggtagccg      2760
     tgtacttgat ccgctgcgct acgctgctat gctttggagt ctgtgctctg ttactggtat      2820
     atgtagcgtg cagggaaaat caaacacgac tatttcgaga accagggccc agcggcattt      2880
     aggacgttaa ccagatactc aggggaggtc cccctataac atatctcaga cccgtcaaaa      2940
     tcgaagtcgg agatgtttgg tcatcccctt g                                     2971
//
ID   Mariner3-7_LMi repbase;    DNA;    INV; 2522 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 19.12, Created)
DT   26-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2522
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3285-3285 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           471..2087
FT                 /product="Mariner3-7_LMi_1p"
FT                 /translation="MANPVNVLLLAMEIYHRRQMKQSTENTREDYVMCDMV
FT                 VKLLDEHVNSADMWLETTETLDIADCESTDGEETEESCTHEDSSSDSATYH
FT                 HQLSPKATPATTITLSDKEKAVKYWLNESGKKRLRVSTVQNRYRFVRSERE
FT                 LYRWKKEVAGRRKSRLEIATEINARLFEQFTDARRQSLSVSDTTLRDWALE
FT                 IANAIGAKEFTASQSWISRFKRSHKIVARKITKFVSRNRSENEVTQMEMIE
FT                 AFLTTAKNKIASFSESYVYNADQSGFQKEMRAKRTLSFKGEKHIEAIAQST
FT                 TALTHSYTIMPIISLDGSLLPKLYVCLQEPTGRFGPRVKQTMFYADNLVVD
FT                 ASKSGKMGNDNVTLFMRHAFLPFCGNKSLLLLDSWSGHKSSDSLKAVFRAH
FT                 PDKEVEILQIPPGTTNVIQPLDREFFRQWKAFYRKLTEKIIVCKSLQFPVY
FT                 HRDNILKLQSVVHYQFSSPRFQNVIKYAWHASKYTDIRPDSFLTPAEFCLR
FT                 TSNNVCDSQGCHMSSLLVCSWCTKNLCFEHCINISHFCGNYKK"
XX
SQ   Sequence 2522 BP; 759 A; 510 C; 557 G; 696 T; 0 other;
     caagggaatg gtcagacttg tcatgccgaa acatgtattg atttttttag cactgttagt        60
     taacattgaa ggaagtctgt atgcagaatg ttagctgctg acatgacctg gaagtcacct       120
     aaaaaaatca cgaaaatggc tgtttttcct gcttggcgct tgcggtgacg gctggccacc       180
     cctggaaatg gcgagtcgcg agctgttgtt atggtgagcg ttgtgcgcat ggtcgggagg       240
     tgcggccgtc ttatcgcggc gttcactaaa gaggaatatc gttgcacggt tttggtggaa       300
     aggggaaacg aatattcgtt tctgtggcat gcacttcctt ttcatttctg gtacgtattt       360
     cgaaacatac cgtcctgaaa ctggttagag atgtgaaaga tattctgtac atctacatct       420
     atactccgca agccacttta cggtgaacat tcaatctccc ctcacaggtg atggcaaacc       480
     ctgtaaatgt tttgctgctt gccatggaga tataccacag acgccaaatg aagcaatcaa       540
     cagaaaacac gcgtgaagac tatgtgatgt gcgacatggt agttaaactt ctagacgagc       600
     atgtaaatag cgcagacatg tggctagaaa cgactgaaac actcgatatt gcagactgtg       660
     aatctacaga cggcgaagaa acggaagaaa gttgcacaca tgaagactct tcgagtgata       720
     gtgccacgta ccatcatcaa ttatctccga aagcaacacc agcaactaca attacattat       780
     cagacaaaga aaaagcggtg aagtattggt tgaacgaaag tggtaagaaa cgcctacgtg       840
     tcagtactgt tcaaaatagg tatcgctttg tccgttctga acgtgaattg tatagatgga       900
     aaaaggaagt cgctggacga cgtaagagtc gactggaaat tgcgacggag ataaatgcgc       960
     gactttttga gcaatttacc gatgccagac gacagtcatt gagtgtcagc gacacaactt      1020
     tgcgtgattg ggcgttagag attgccaacg cgataggcgc taaagaattt acagcttctc      1080
     aaagttggat tagtcgcttc aaaagatcac ataaaattgt ggcacgaaaa ataacaaaat      1140
     ttgtatcgag aaacaggtcg gaaaatgaag tgactcaaat ggaaatgata gaagcttttc      1200
     ttacgactgc aaaaaataag atcgccagtt ttagtgaatc ttacgtttac aatgcagatc      1260
     agtcaggttt tcaaaaagaa atgcgtgcga aaagaacact gtcattcaaa ggggaaaaac      1320
     atattgaggc aattgcgcag tccacgactg cactcaccca ttcatacact ataatgccca      1380
     taattagtct ggatggttca ttgctgccta aactatatgt gtgtcttcaa gaaccaactg      1440
     gacgttttgg accacgtgtc aaacaaacaa tgttctacgc agacaatctt gtggtagacg      1500
     catcgaagtc tggaaaaatg ggaaatgata acgttacact tttcatgcgt catgcttttc      1560
     ttccgttctg cgggaacaaa tctcttctcc ttctagattc gtggtcaggt cataaaagtt      1620
     ctgattcatt aaaagctgta tttcgagctc accctgacaa agaagtagag atacttcaga      1680
     ttccacccgg cacgacgaac gtaattcaac cgttagacag agaatttttc cgccagtgga      1740
     aggcatttta cagaaaacta acagagaaaa ttattgtgtg caaatcactg cagtttcctg      1800
     tctatcaccg tgacaatatt ctcaagttgc aatcagtcgt acattatcag ttttcctccc      1860
     cacggtttca aaatgtgatt aaatatgcgt ggcacgcctc gaaatatact gatattaggc      1920
     ctgattcctt cctaacaccg gccgagtttt gtctacggac gtctaacaac gtctgtgatt      1980
     cgcagggctg tcatatgtcg tctttgcttg tatgttcttg gtgcacaaaa aacctatgtt      2040
     ttgaacattg tatcaatatt tcgcattttt gcggtaatta caagaaataa aagtttgacg      2100
     tgttctaaac cgtatatgta tttgtgtcta tttcatagct atttggaaag aatgttgtag      2160
     ataacatatc agctacattt gtcaacgaat ttattattat cgtatttatt aattatcgta      2220
     cgatcgcttt cactgggcga atcagctctc tcactgctgt ggcaggagag cggcgcgtag      2280
     ctaacgccac cttgtcccta gatggcgttg gtataacgta gcgagagagg tcagggttgt      2340
     acaacaggca gttataagcg cggaaaccat gcgacaataa tgtcatactt cataaaagtt      2400
     tttacagact tccaggtcat gtcagcagct aacagtctgc atacagactt ccttcaatgt      2460
     taactcacag tggtaaaaat agcaacacag gtttcgacat gacaagtctg accattccct      2520
     tg                                                                     2522
//
ID   Mariner3-8_LMi repbase;    DNA;    INV; 2760 BP.
XX
AC   .
XX
DT   11-JUL-2014 (Rel. 19.12, Created)
DT   11-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner3-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2760
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3286-3286 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. TSDs are 3-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1518..1643,1526..2239)
FT                 /product="Mariner3-8_LMi_1p"
FT                 /translation="MNKVSHTILLNMLLLYLETFYLKCSFVYKRQPVTLAP
FT                 EFKKQSVTYYTAQYALTLSGNVLPQVFVCLQETTGNFGPRVQKTVNEYEKK
FT                 YKNVVITSSKSGKLTTELYTDFLKRCLKYYVGQERFLLIIDSWGGQAKPEI
FT                 YDEIFQDDEKSPTCTIKVIPPKCTPLVQPCDVYFYRQVKNLIKRLQNSAYL
FT                 IERNRNKIQSIVHHQLSSPIFKEMIRYAWYASRLSDEREVFRNVNEVCFST
FT                 HLLKKRCSCKQSSFINCARCQNIFCFQCFYDSYHSGACT"
XX
SQ   Sequence 2760 BP; 937 A; 479 C; 504 G; 839 T; 1 other;
     caaggggacc ttcaggtctc ggaaattcag ttcgggatga gactttgcag gctagtagta        60
     tacctcaagg gtgtcctctc atagaagtat taaagcgcac tatccagaaa gttccgaaga       120
     aaaacggccc taaagtttta attgcagctc atataaatct tatgtagtag ttgaaaggtc       180
     aagcttgtgt gtggtggagt agctcaggca gtagcgtgtt cgctcgccat gcagtggact       240
     cgggttcgat tctgcctcca ggaaacattg tatttttaat ttttattatt tgtttaaaaa       300
     ttataacttg taaataaatt taatgacttt aagtgctatc aattaaataa taagtaactt       360
     tagtttgttt atmaaatggc tgtcagagtt acttaaaatt tgaatttcaa tgttttcttt       420
     tttaaaagtc gaataatgcc aaatgcattt taatggatgt aaattaaaga gttaattact       480
     attgtcatta caatgttatt tcaaaattga gcgatattat aatctgtgga aagattataa       540
     atatccgttg taaattagag gaaccggttt cttcatggaa aagcagagtg ccctattgat       600
     ataaacaggc agacaggggc ctacctgcta cagaccatca ttcctacttc cagagattgg       660
     cgtttcaata tgtgaattaa aaatgtctgt caatgaagga tgaagtatca gaagctgctg       720
     attcattata cagtgacatg tcgaaggtgt taaaagatgg gtctattacg aagtttgctt       780
     gctgcaaata atttcattgc atcgaatctt cacaacaatt tctctgaagc agttgtgggt       840
     gaagaaattt acaacgatat ggacatgctg ctgaaaattc tccgaaaatg aaagtgaaag       900
     gaactttcga aaaatcgaag accaagaacg aaaaaaaggc aagagagtag acttcattac       960
     aaaatttgtt atgtcgcaaa ggcccactgg actaaaaaaa aaatatttat ccagtgggaa      1020
     gaaaaataaa aaaggaggca atcacttgat aacaatcgtt ccggacgtat gatcttttgt      1080
     tgaagccgag agaatttcag caagtgacta caaggaattt acgcagtgct ttagcagcag      1140
     cacaacagtt cgattttaat taaagcttct atagctggca attcaaaaat aacacgattc      1200
     gtcagcgaaa agtgacaaaa tttgtttcaa gaaaagaaac agcgacgatc gcagaaacct      1260
     tggctgctgc agacactttt cgcatccaga cgaataaatt gataccgaat tttaacaaag      1320
     agtttgttat caacactgac cagacaggta tttattgcag attatttaaa aattcatttt      1380
     ctttctattt ttacgattct ctgacaaaat acttcaattt cggttgtttt ttctttccag      1440
     gatgtcagta tcagtcggtg tacaacagaa ctctggctgt caaaggaagc aaaaatattt      1500
     ttgtccaaag acacgacatg aataaagtgt cacatactat actgctcaat atgctcttac      1560
     tctatctgga aacgttctac ctcaagtgtt cgtttgttta caagagacaa ccggtaactt      1620
     tggcccccga gttcaaaaaa cagtaaatga atacgagaag aagtataaaa acgttgtaat      1680
     aacgtcttcc aaatctggga agctaacgac agaactatat actgactttc taaagcgttg      1740
     tttgaagtat tatgtgggac aagaacggtt tctgttaatt attgactctt ggggtggaca      1800
     agcaaagcct gaaatatacg acgaaatctt ccaggatgac gagaaatcac caacatgtac      1860
     aattaaagtg attcctccga aatgtactcc acttgttcaa ccatgcgacg tctattttta      1920
     tagacaagta aaaaatctga taaagcgtct acaaaattcc gcttatctta ttgaaagaaa      1980
     cagaaataag atacaatcaa tagtccatca tcagctgtca tcgccaattt ttaaggaaat      2040
     gatccgatat gcctggtacg cttccaggct ttctgatgaa agagaagttt tcaggaatgt      2100
     caacgaagta tgtttttcaa cacatctttt aaaaaaacgt tgttcctgta aacaatcgtc      2160
     gtttataaat tgtgcaagat gccaaaatat tttttgtttt caatgttttt acgacagtta      2220
     ccactctggt gcttgcacat aaaatacaaa attgacaaat gaagataaca gtgatttttt      2280
     aatttaaatt agtaattaac tttttaattt acctccagta aaatgcatct ggcattattg      2340
     actttaaaaa agaaaacatt gaaattcaat tttaagtagc tgtgacagcc attttataaa      2400
     caaactaaaa ttagttatga tttaattgat agcaccttaa gtcattaaat ttatttacaa      2460
     ttataatgtt taaacaaata atcaaaatta aaaatacaat atgtccttga ggcaggatcg      2520
     aacccggtca gctacatgac agtcccacac gctactgctg agctaaccgc ctggctgcac      2580
     ccatgttcct tcaactagta tataacatgt tagagctgcg cttaaaactt tagggccttt      2640
     ttctcggaac tttctggata gtgcgcttta agacttccgt gagaggacac ccttgaggta      2700
     tactactaac ctgtaaagtc tcatcccgaa ctgaatttcc gagacctgaa ggtccccttg      2760
//
ID   Mariner3-N1_LMi repbase;    DNA;    INV; 1743 BP.
XX
AC   .
XX
DT   02-MAY-2014 (Rel. 19.12, Created)
DT   02-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1743
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3287-3287 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. TSDs are 3-bp long.
XX
SQ   Sequence 1743 BP; 520 A; 324 C; 338 G; 561 T; 0 other;
     caaggagagg gtctgacatg tgggtcaccg atttcatcaa attttgcatg gacgttctat        60
     attgaatata aagagacacg tgtttcggct ttttgctaga cagtagtttt tgaaaaataa       120
     ggtcaaagtt gatgatggaa aatcgcgttt tcaatgctat acatcgaaag atcgtctgaa       180
     gatgagcatt ttttactaat atatatgtgg tcaaaagtta atcacgtaat taacgttttt       240
     gtgttttcat gctgtagctt gggtactcgt aaacatgagc gactttccga gcgccgtcgc       300
     cggtcgagcg gtccagggct tggactgtca aaccgtggat ccaggttcga acctccatca       360
     tggcaatttt ttgttagatt ttttcgatgt atttgataat attctcatat ttgtaatacc       420
     ttttcttgcc ttattttgaa gtagagcatc gggaagtgtg attaatattc aattaagtgt       480
     attatctgtt tacagctgtt ttgttttgat acacagagag aatttggaaa tgttttcgtc       540
     acgtgctcaa aatctggaaa gctgacctcc gaactgtatc aattatattt ggatcatgtt       600
     ctgaaacctt atgtgcagaa aaataaattt tgcttgatac tggattcatg gggtggccaa       660
     accgacatga cgcgctacga caggactttt gtcgatgatg atgctcaacc gacctgcact       720
     gttaaagtga taccaccgaa atgcaccttt ctttgtcaac cttgtgacgt ttacttgttt       780
     cgacaggtca agaattttat cgcaagactt caaaatcatg ccacattaca cgagagcaga       840
     gaaattcatg atagagcaga tgctattaaa attcatgcct tggtccataa tcagttgtcc       900
     gcgcctgtct ttcaagatat gcttttatac tcttggtacg catcgaaatt aatatctgat       960
     agacctgtct tcagcaatat aaatcaggta tgttttccac gaacgatatc tcggacaaca      1020
     tgtgaatgtg gcaatatgtc gttcgtgtgt tgtgcatggt gtgagaaata tttgtgtttt      1080
     ggttgttttt atgataagtt tcaccctact ggctgtgaga acgctgacga atagacggcc      1140
     agtaattgga attacgtaat aatatacttt agaagttttt ttttatttta tttatatttt      1200
     attgtttttg cactgtgtat cacaaataaa acagctgtaa acagataata cacttaattg      1260
     aatattaatc acacttcccg atgctctact tcaaaataag gcaagaaaag gtattacaaa      1320
     tatgagaata ttatcaaata catcgaaaaa aatctaacaa aaaattgcca tgatggaggt      1380
     tcgaacctgg atccacggtt tgacagtcca agccctggac cgctcgaccg gcgacggcgc      1440
     tcggaaagtc gctcatgttt acgagtaccc aagctacagc atgaaaacac aaaaacgtta      1500
     attactcgaa cgtcattaac ttttgacccc atatatatta gtaaaaaatg ctcatcttta      1560
     gacgatcttt cgatgtatag cattgaaaac gcgattttcc atcatcaact ttgaccttga      1620
     ttttttcaaa aactactgag tgtctagcaa aaagccgaaa cacgtgtctc tttatattca      1680
     atatagaacg tccatgcaaa attcgatcga aatcggtgac ccacatgtca gaccctctcc      1740
     ttg                                                                    1743
//
ID   Mariner3-N2_LMi repbase;    DNA;    INV; 797 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.12, Created)
DT   28-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-797
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3288-3288 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 3-bp long (TNA),
CC   recognizing 5-bp target sequence [C(TNA)G].
XX
SQ   Sequence 797 BP; 230 A; 153 C; 194 G; 220 T; 0 other;
     caaggaaagt acttgggctc gaacaaacac atatacacca aaatcgtatg agagataatg        60
     taaagatccc ttattgcact agtgatactc ccgcatctgc aaaactctgc agtcgtccgt       120
     tagaggcctc tgcgtgtgcc atgccgcatt gcactttgac ctgtcggttc gccagtaggg       180
     acggtgcagt gtgcctccga agttgcgttt tgtgacgtta tttgtgtggt gaagcgtcag       240
     atggggcggc gattgctaat caatcctgct aatgtattgc gattggttga gatgaagtta       300
     cgaagaaccc ttcttcgtga agatggtatt agtgtagaag atgaatcatt cgcatgcttt       360
     ctcgtatctg ttatggtaca gaaatatgag cataagttag atactgttgt aacactaaca       420
     cataatgatg ataataggga tgataatgac gaacaactca ttgcaagcgg tagtgctacg       480
     gtaagtgcgg gaagaggcga tggaagcagt ggcagtgaat accaacagtc ttccgggaag       540
     aaggttaaag ttgcaactat catcacggct tttgatgaca attcgctaga gaacatgtac       600
     gatgattatt acataagtta tagttaagat atctgcatta cgtatggcgt ctacaattac       660
     atctacagtg ctatctagag catggttgca gagctttgca gaaaaacgac acccaccagc       720
     acattgaggt gtacgtagag atcctgtaac caaacgttca tacagatatg tttgttcgag       780
     cccatgtact ttccttg                                                      797
//
ID   Mariner3-N3_LMi repbase;    DNA;    INV; 1353 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.12, Created)
DT   12-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner3-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1353
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3289-3289 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 3-bp long (TNA).
XX
SQ   Sequence 1353 BP; 390 A; 276 C; 287 G; 400 T; 0 other;
     caaggggagg ccacgacgtt tggaacgcgg atttactgca aacttcgtac actcgtagta        60
     ctccatgagg acaacaaaat gtgtaagcag tagcgcgtac ttctcaagcg ttattgagaa       120
     aatcgcaaga taatttcggt cggtcgtcaa atatgtacct gtgcgtggcc gtttttgtca       180
     cgaagcggcg gcagccgagt ggttagcgtc cgagccccgt actcgttggc gttggtcgct       240
     ggatcgagtc ccgttcgtca ccttttttaa cacagtcata ttcgttacta tttatattac       300
     aattgatata acgggaaaaa tacgtgtaat cagatgtact tttattaaat gttaaagtgt       360
     acctccgaaa tgcccagttt gccaaccgtg cgatgtttat ttctacaggc aagttaaaca       420
     tttcattaag cgtcttcaaa attgttctta tttaatcgaa agagaaagag aaattgcttc       480
     tcgtgaagac gctattaaaa tacactcgat actgcatgac caattatcag cgccgatatt       540
     taaggaaatg ctgcgttatg catggtttgc ttccaaatta tcggatgaaa gagaggtttt       600
     taaaaatgtt agcgaggttt gtttttccat ggaaaacctc aaaagacctt gcgtatgcgg       660
     aaacatagca tttattcaat gcagctggtg ccgtttaact ttatgttttc catgttttta       720
     cgaaaaatac catcctgcaa cttgtactcg taatgtcgaa agcgacgatt agttgtacat       780
     ctttcgaaag ccgtctgtgg cggtcaaaac ttgcaggtaa caagtagttt cgggctcctt       840
     ccaggaataa gggatttctc aaatcacgga caagcaaaca ttttcacgtc agtatcactt       900
     tatgcgtttg gtcgtttact agtcggtagt tatgaatatt atattatttg tgataataaa       960
     actttgtaga ctgccaaata acattgtaaa tttaataaaa gtccatctga ttacacgtat      1020
     ttttcccgtt atatcaattg taatataaat agtaacgaat atgactgtgt tgaaaaaaaa      1080
     aggtgacgaa cgggactcga tccagcgacc aacgaccaac gagtacgggg ctcggacgct      1140
     aaccactcgg ctgccgccgc ttcgtgacaa aaacggccac gcacaggtac atatggtaca      1200
     tatttgacga ccgaccgaaa ttatcttgcg attttctcaa taacgcttga gaagtacgcg      1260
     ctactgctta cacattttgt tgtcctcatg gagtactacg agtgtacgaa gtttgcagta      1320
     aatccgcgtt ccaaacgtcg tggcctcccc ttg                                   1353
//
ID   MarinerN-1B_AP repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   31-AUG-2009 (Rel. 14.09, Created)
DT   31-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MarinerN-1B_AP.
XX
NM   MarinerN-1B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-244
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2066-2066 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 244 BP; 58 A; 71 C; 65 G; 50 T; 0 other;
     ctatactctg ttccatctaa gagtgaacca cttggctgac caaaacacgt tttttccgcg        60
     cattcccacc acaatccgga catcggtgag agttttaaca cgggcgcccg acggccgacg       120
     acggccggcg atgactgtcc gccaatcaca gaacgcataa ccatcgcatg gggggtcagg       180
     cactgttcgg cggctcagtc tgcgtgcgcg aaagcggttc actcttagat ggaacagagt       240
     atag                                                                    244
//
ID   MarinerN-1_AP repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MarinerN-1_AP.
XX
NM   MarinerN-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-244
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2067-2067 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 244 BP; 55 A; 68 C; 71 G; 49 T; 1 other;
     ctatactccg ttcagattaa gattgaaccg gcggctcgac caaaacacgt ttttttcgcg        60
     catttcggac attggtggga gcgtatgcac ggcggccagc accggcgccg acgatcgacg       120
     acggccggcg atgactgtcg gccaatcaca gaacgcatag ccatcgcata gggggtcagg       180
     cactgttcgg cggctcagtc tgcatgcgcg aagccggttc aatcttaacc tgaacngagt       240
     atag                                                                    244
//
ID   MarinerN-2_AP repbase;    DNA;    INV; 452 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MarinerN-2_AP.
XX
NM   MarinerN-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-452
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2068-2068 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 452 BP; 125 A; 100 C; 116 G; 111 T; 0 other;
     tactctattc agaataagaa ttcccactcg cttgacgaaa actcgtcttg ttcgcgcatg        60
     tctgttgcca ccagtcggcg ctgatgtttg ctgtgccgcc gccgccgacg tgccgcaggt       120
     gtatacgtag tgaacaataa tatcgcaccg ttttcacgaa gaattgtata cgacgtaggc       180
     attgagtttg gtgcagaaca ataaggtaaa agtacaagaa acatggtaaa gaaaaaaaat       240
     atacattata acataatagg taataattat tacgatcttg ttattatgat catcatgtat       300
     gcacggcggc ggctgtcgat agcgacgggt gacggcagct ttcgacaact ggcgaccaat       360
     cgcagcgcag ccgacactcg ccagggggtc tgacggctgc cggcggctca gttgcgtgcg       420
     cgaaagtggg aattcttatt ccgaatagag ta                                     452
//
ID   MARINERN10_AG repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   MARINERN10_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN10_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-270
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN10_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 61-61 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of MARINERN10_AG in the genome,
CC   they are ~97% identical to the consensus sequence.
CC   MARINERN10_AG copies are flanked by 2-bp target site
CC   duplications.
CC   This family is characterized by a target site specificity:
CC   The consensus sequence has 13-bp terminal inverted repeats
CC   (4 mismatches) and a 3' terminal palindrome (pos. 194-241).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA
CC   transposon. The genome harbors several subfamilies of
CC   MARINERN10_AG.
CC   One subfamily is composed of MARINERN10_AG elements harboring
CC   MARINERN9_AG.
XX
SQ   Sequence 270 BP; 77 A; 59 C; 50 G; 84 T; 0 other;
     cccgctgcgc aaagcgatcg aaaacttctc aaactcaaac tgcaaacata tttcacagcc        60
     catggctgtg aaatatttcg cattcaaaat tgttgcaaat ttataaatga aatatttcga       120
     aattttcagc gctgaaattt ttggattgaa atatttcttc gatcggaatc caagcgtttt       180
     ccctgacatt tctgctcgct ttttcgatcg cttttggcgg aaagcgatcg aaaatccgag       240
     ctacaaaact gctcgatttt gtcgtgcggg                                        270
//
ID   MARINERN11_AG repbase;    DNA;    INV; 363 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   MARINERN11_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN11_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-363
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN11_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 62-62 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of MARINERN11_AG in the genome,
CC   they are ~97% identical to the consensus sequence.
CC   MARINERN11_AG copies are flanked by 2-bp target site
CC   duplications.
CC   The consensus sequence has 13-bp terminal inverted repeats
CC   (4 mismatches) and a 3' terminal palindrome (pos. 194-241).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA
CC   transposon. The genome harbors several subfamilies of
CC   MARINERN11_AG.
CC   The 30-bp and 81-bp 5'- and 3' termini of MARINERN11_AG are
CC   100% and 87% identical to the corresponding termini of
CC   MARINERN10_AG.
XX
SQ   Sequence 363 BP; 99 A; 80 C; 100 G; 84 T; 0 other;
     cccgctgcgc aaagcgatcg aaaacttctc agcctctcgc tcaatgtagc tagagagcaa        60
     gaaccaataa tgataaagcg aggtgaaagg atggggaaga ggggaaggag gggagaaaga       120
     gaacgtgggt gtgaactatt tttcggccat tatcattttt gcgccaacac ggtcgcgtac       180
     cggagctttt ttgtcagaaa gagataaaca catacagcgc gctctctcga acgatcgtaa       240
     acgcttcaat cgatcaagag cttcgatcgg ttcttcggac gtttctgctc gctttctcga       300
     tcggtttcgg cggaaagcga gctagaaacc gagctcaaaa actgctcgat tttgttgtgc       360
     ggg                                                                     363
//
ID   MARINERN12_AG repbase;    DNA;    INV; 801 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   MARINERN12_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN12_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-801
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN12_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 63-63 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~20 copies of MARINERN12_AG in the genome,
CC   they are ~11% identical to the consensus sequence.
CC   MARINERN12_AG copies are flanked by the TA target site
CC   duplications.
CC   The consensus sequence forms an imperfect palindrome.
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA
CC   transposon.
XX
SQ   Sequence 801 BP; 143 A; 235 C; 239 G; 174 T; 10 other;
     gtgatgggcg tttcggagcg caccaacggc tccggagccg gctccggact aacggctccg        60
     gagccggctc cgactttttc ccggagccgg ttccgctccm acggvtcgac ggctccggag       120
     ccggctccgc tccgacggct ccggagccgg ctccgcacca acggcccgga gccggctccg       180
     caccaacggc tccgtagccg gctccggact aacggctctg cactcacggc tccgttccaa       240
     cggctgcgga gccggcttcg ggcccaccgt tccggagccg gcgacgaatc aacggctccg       300
     gaccaacggc tccgaactaa cggttcaata gagacatcat tgtatgatag cgtaataaaa       360
     aaacgaatat atcttctcgc acgtgtggaa gctaacacac gatgtgattg cagtattgac       420
     atgcatgacg ttgtgtagca ttcgttggtc tcgcctttct taacaatatt caaaagtmat       480
     cgatgttttt tttttgataa attcttttaa acatgaccta ctccgctatt tacggatttc       540
     ctcgattgaa acttcattga aaaagttmtt ttggtccttt gtgttaaaac cggctccgga       600
     gccgttggag cggagccgtt ggtgcggagc cggctccgga gccgttgggt gcggagccgg       660
     ctccgragtc gtgggwgcgg agccggctct ggagccgtgg gtgcggagcc ggctccggag       720
     ccgtbggtgc ggagccggct ccggarcytg tstggagccg gtcggagccg gctccggctt       780
     cggagccgtt ttgcccatca c                                                 801
//
ID   MARINERN13_AG repbase;    DNA;    INV; 467 BP.
XX
AC   .
XX
DT   05-MAR-2004 (Rel. 9.02, Created)
DT   05-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   MARINERN13_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN13_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-467
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN13_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 4(2), 43-43 (2004).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of MARINERN11_AG in the genome.
CC   They are ~95% identical to the consensus sequence.
CC   MARINERN13_AG copies are flanked by 2-bp target site
CC   duplications.
CC   This element has imperfect 16-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
SQ   Sequence 467 BP; 154 A; 97 C; 75 G; 140 T; 1 other;
     cccaattgac attttcgagc acgaataatc gggaattcga gcaaattccc ttaaactgga        60
     gccttaaact tcccttaaac tgcaccagtt taagggaatt tagaaaaagt cctttaaaat       120
     caactgtgat gcggcttttt cgttactttc ttctagattc gctcggaaat gatgtttcct       180
     atcgttatag ttggtcatgt acccatttta tacttaaata atatccattt tttataaaat       240
     aacgtcacac aaaattagct tttgtttttc atcaaaaaaa raccatagct atgaatgaaa       300
     aatgagctcg acggcatcgt ccatcgatag aggaacgtct aatttacgaa cacaccaaat       360
     cttggcgctt tcaacacact tgatcacaca caaatccaca atttcaggcg tatcgagtac       420
     taatcgagca gatatgggaa aacaatttcg agcaaatgtc acttggg                     467
//
ID   MARINERN1_AG repbase;    DNA;    INV; 1056 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   MARINERN1_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN1_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1056
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN1_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2(11), 19-18 (2002).
XX
DR   [1] (Consensus)
XX
CC   There are several hundred copies of MARINERN1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   MARINERN1_AG copies are flanked by 2-bp target site duplications.
CC   This element has 23-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
SQ   Sequence 1056 BP; 352 A; 172 C; 168 G; 363 T; 1 other;
     gggtaaatgt acctatagtg gtggtagtac caatagtggt gctattgctc taaaatgcgg        60
     ttcatagggc aaattaaaag tatttaagtt atttaagtta gtgtgaaatg ttctttagcc       120
     ttttacaaag ggtttaaaag ttaaatgggg ccattccgtt acttagtgac cgaaaaatcc       180
     attattttgt gaaatgtgtc aacatttttc caaaatcctt aggatttcat aacgaaactc       240
     atatttctgt taacgttcta aatgatcaca tacccacgca attactagtt tttcaacatg       300
     actgttatgg aatgttattg ttttactaaa attatttgca ttttgaccat atttatgcat       360
     ttttaagtgt tttttaccat agtgccatta taggtacaca aaacaggcat gttcctatag       420
     tggttatagt tataaaatca ataaatacag gtcattttag attttttcga ggaaattttt       480
     gacatgtcgt actgttttca ctaaaataag caacagaaat gagttttatk taggtaattt       540
     accaaaaaca ggccaaaatt cgcttatctg gctgaatgaa aaattgactt caaatcaagc       600
     acactcttcc gggtgttggt tgatgacagg tgtgatgcag tactttagtg aatagtttca       660
     tcaatcaaat ttatacattt ttttacgatc aaattacgca agaaaccaat attatggcag       720
     taatcgttgc tattcacacg aaaacatctt caaaactaag ttatattgat attatacact       780
     gttttgaggc atccttgttt accaccacta taggaacaca atacgacgac tataggaacc       840
     ataccaccat tataggtaca acgaagcaat cacaaaaata tgtatttttt cgtaaatttg       900
     atgtgtttca tggtaaaaat ggttgcgatt gcgaagataa aacatattcc aattgctatg       960
     tgttaaaata ttcagaaatt gtccttcctg acactttaaa tccattaaaa cacatcggta      1020
     cctctacaaa ttgcaccact attggtacat ttaccc                                1056
//
ID   MARINERN2_AG repbase;    DNA;    INV; 811 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   MARINERN2_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN2_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-811
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN2_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2(11), 20-19 (2002).
XX
DR   [1] (Consensus)
XX
CC   There are several hundred copies of MARINERN2_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   Some copies are 99% identical to each other.
CC   MARINERN2_AG copies are flanked by the TA target site
CC   duplications.
CC   This element has imperfect 46-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
SQ   Sequence 811 BP; 276 A; 136 C; 142 G; 257 T; 0 other;
     cacagcaaat tttctcatcc tgcttcagta aagtttttta ctgaaacggt tcagtaatag        60
     aatattttac tgattttcag catgaatgtc atgtttttac tgactttcag caaaataatt       120
     tactgaattc atttcagtaa tacgcatttt actgaaaatc agtaaaataa gtgtcaaatt       180
     agtcgtttca ctggatatca gtaaaacaaa ttactgaaaa tgcagcaatt cattctgtca       240
     aatcgacctg tcagtcagaa catcaaaaca aaacaatgcg gtacctactt gctcgtgatg       300
     tgcaaaaagt tgattttgta ggcgcttaca ggcaccctgg tgaaatttca ggtgatattt       360
     cggcttacgg gattaattta aaacaattgg cagccgtgtt ggtgtgtaaa atgtttgcta       420
     caatccactg tgcttgctga aattgcgtgg tgtctgtgag cgcttactga accatctaca       480
     cttgcggcgg caaaatacag tataaaaact gtataaaaca acacaaaaca tgtatgaata       540
     tgaactgagg gactggcaat atctgcgcat caataaaaac tcaatttaaa ataaatattt       600
     cgtcattttt taatcgctac caactactga aaaatcagta atatgagaat ggctttactg       660
     ggatttcagt aaacgagctg tcattttggt gagcaccgga cattactgaa tgattcagta       720
     aacattcttt ttactgaaag gattactgaa acttcagtta aaaaaatttc agtaaaattt       780
     tactgaagtt cagtaaaaaa agttttctgt g                                      811
//
ID   MARINERN3a_AG repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   11-FEB-2003 (Rel. 8.01, Created)
DT   11-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   MARINERN3a_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN3_AG; MARINERN3a_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-357
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN3_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(1), 7-7 (2003).
XX
DR   [1] (Consensus)
XX
CC   MARINERN3a_AG is a subfamily of MARINERN3_AG.
CC   The MARINERN3a_AG and MARINERN3_AG consensus sequences are 85%
CC   identical to each other.
CC   MARINERN3a_AG copies are ~95% identical to the MARINERN3a_AG
CC   consensus sequence. They are flanked by the TA target site
CC   duplications.
CC   This element has 23-bp terminal inverted repeats (1 mismatch).
CC   Classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
SQ   Sequence 357 BP; 106 A; 70 C; 69 G; 112 T; 0 other;
     cagtggagcg ccgattatcc gggctcttcg ggactcgacc tcgcacggat agtcgaataa        60
     cacggataat gagtcaaagt atttatttta tcacaaaatc ctggtttgtt tttgaaatta       120
     atattatgtt ttggtaaaac ctagccagtt ttataaactt catgtttttc cgatgagaat       180
     atttgaaatg tgccatgaat tatagcgtat tttgttatga caaaatgctc tggtaaccgt       240
     tatttcaaat atcctcctca gcacgcaatg tcatctatgt attgaactgt catttttcaa       300
     cagcacggat aaacggacaa ccggataaaa ggtacccgga taaacggcgc tccactg          357
//
ID   MARINERN3_AG repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   29-JAN-2003 (Rel. 8.00, Created)
DT   11-FEB-2003 (Rel. 8.01, Last updated, Version 2)
XX
DE   MARINERN3_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN3_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-358
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN3_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(1), 6-6 (2003).
XX
DR   [1] (Consensus)
XX
CC   MARINERN3_AG copies are ~98% identical to the consensus sequence.
CC   They are flanked by the TA target site duplications.
CC   This element has perfect 23-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
SQ   Sequence 358 BP; 106 A; 70 C; 61 G; 121 T; 0 other;
     cagtggagcg ccgtttatcc gggcttctcg ggacttgacc tcgaccggat aagcgaataa        60
     cacggataat gagtcaaatg atatatttta tcatcaattt ctgattagtt ctttaaaaaa       120
     ttcctatttt ttgataaaaa taacccagtt tttattaact tcatgttttt cccatgagaa       180
     tatttgaaat ttgccatgaa ttatagtgtt ttttgttatg ataatgtgct cttataaccg       240
     cttttttaaa taccctcctc ataacgcaat gtcacctttg tattgaactg tcatttctca       300
     acagcacgga taaacggaaa gccggataaa aggtacccgg ataaacggcg ctccactg         358
//
ID   MARINERN4_AG repbase;    DNA;    INV; 1279 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   MARINERN4_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN4_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1279
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN4_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 21-21 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~50 copies of MARINERN4_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   MARINERN4_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 16-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon. This family is composed of several subfamilies.
XX
SQ   Sequence 1279 BP; 321 A; 277 C; 323 G; 358 T; 0 other;
     cccaacagtc aaaagccgaa gattttatat tgacctttca ctttttctat ctgtctctcg        60
     ctctaatttg agcgattttc ccctgatgag tgtccccgag cctcctcgtg tggttgttgt       120
     tgttggaagt tgaaaccgaa accccttcgt gcgctgccaa aatcagcgaa gaacgaaatc       180
     gagtggctca agcgaaaaaa cgaaaaaaaa tgacgaacga gtgtgctgtg acaataacac       240
     acacacgcac aaggcgacac ccgaaatctg gtgcgatacc ggctttcagt ggagcaagta       300
     cacacatgca cacatttggc cacaccagcg ctctgttcta gtgcaggtag ttttctgcag       360
     tccacggtga tactacacac agccacgcac ttggcgatac acgctgtgtg gtgcggtgcg       420
     gcggacgttc agaattcagt ggtgcaaata cacacatgca tacacttggc gacacacgct       480
     ctgctgtgcg gtgagatttg tgttctgtgt ccagtggtgc aaatatacac acacacgcac       540
     ttggctacac acgcagtacg gcgcggttgg cttggcagaa gcgcatacac acattcacgc       600
     agtaggcttt actttcagtc cagtgaggtt ggtgcttgtg tggtgtttca gctcttggtg       660
     gtcagcggat aaaccccgta aaaaatggag atcattctaa tttaaggtaa gtaaaagtga       720
     ttaaaattat caaccaacat tccccccttc taattaatat catttttctt ccatttcatg       780
     tgtgtttcac ggcgaacgga gacaacaaaa cctgtggcag tgtcgtggtg ttggagatgg       840
     tggcccgtac agtgcagcga gaagaactag gcgcgacagc gatgtggagc agaaagtgct       900
     gtgctgattt taatttttct ctgtgcgagt gtaaaaagtg ttttttaaat tatgtgcgtt       960
     aatttagaat taagtgcagt gattattgtg catgtgttgt gtgtgttttt ttttgtattc      1020
     tatgttgtgt tcgatattca ataaatcgaa tcatgttgat ataatggtcc gcactgtatc      1080
     atttcggaaa gaaatcctgg caaaaaaggg ggagggggct attttaacga agggtcgtgc      1140
     cgaaccccgt tcgggttttg cttcggcttc gggtttgctt cggcttcggg acccgacgga      1200
     tcggttgaat aatttcgcca actcagcttc aaagccagct tcaatctcag cggatctctg      1260
     agtgctggtg accggtggg                                                   1279
//
ID   MARINERN6_AG repbase;    DNA;    INV; 1170 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   MARINERN6_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN6_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1170
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN6_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 23-23 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of MARINERN6_AG in the genome.
CC   They are ~99% identical to the consensus sequence.
CC   MARINERN6_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 12-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon. One copy of MARINERN6_AG has been inserted into
CC   a HARBINGERN2_AG element and multiplied in a few copies as a
CC   composite subfamily of HARBINGERN2_AG.
XX
SQ   Sequence 1170 BP; 340 A; 244 C; 278 G; 307 T; 1 other;
     cccaaccagc aaaaccgaag ctattggaaa actttcctgt gtgccaaagc gagagagcat        60
     gtcttctttc tctagatttt ggacggcaca acgccgatcg tgtggcctat gaacgaaaaa       120
     cgggagaagg ggaaaccgat atccttcgag tgacacacac gcatgcatct gcatgcgtat       180
     tccgctgaac cgagactaca catctctctc gatctcccat gatttttctg ctatcgcgct       240
     catccgggtg ttaggcatcc tcagtctgtc cagaactttc actgtggaag gatgtgttgg       300
     agtgatgtgt gatttcttgt gccccgtact ttgctcgttt acgttttgtg ccgtgttcct       360
     tcttcttcaa ttatggaatg atttatcctt gtaaatttct aaggtaagtt tcttatcctc       420
     gtgtgtgctt caatggrtac attcaactaa cgcttgtcgt ctaaaaagtt acagtgcacg       480
     cgcatgttaa tcgacggttg ccaacatccc gcaaaacgat cgacggaagg aaaacggtgt       540
     ccggttttaa aatataaagg taagcgtttc tataatccta tgtgcaaaat attgtttagt       600
     ttgttataaa aaacatggat taattattgg ttaattttca tcaacagatt tcattacagc       660
     tctttcgtag aagagcgcac ttcaaggacg cctaggatac ggctaaacat gcgcagcacc       720
     agtccgtgac gtcatttcca gacaggcgcc ggctgaacac gcgcagcacc agtcgaggat       780
     atcctagcgc agagggtaga aggaagaacg agaggaaggg taacagaaag caaccgcagc       840
     atttggaagg ggtgaagcat cctgccgtat acagagtgtg agtgtgccaa aacgcatgtg       900
     gaaagagtaa caccaataaa tagcatgcga aagtgtgcat aaagcaaaaa gaaaaagcgt       960
     cactactaca accagcaatc cgaaaatata aggggaggga taaatacaaa tgtatgcgta      1020
     agcaggacca gcaatccaag catttgaatg tgtgcgtcgg tttgtgccgt gctgaaagtt      1080
     tttactttag ctgctgctag tgtaaaaact taaggaaagc ttaaagtaaa aattttttac      1140
     acggggcgcc ttcggaaatt gttggctggg                                       1170
//
ID   MARINERN7_AG repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   MARINERN7_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN7_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-379
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN7_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 24-24 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~500 copies of MARINERN7_AG in the genome (multiple
CC   subfamilies), they are ~95% identical to the consensus sequence.
CC   MARINERN7_AG copies are flanked by the TA target site
CC   duplications.
CC   This element has 23-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like DNA transposon.
XX
SQ   Sequence 379 BP; 120 A; 82 C; 71 G; 106 T; 0 other;
     cagtagaacg tcgattatcc gggcagctcg ggaccggacg gttgccggtt aatcgatttg        60
     cacggataat ggtccaagaa atgtcaaatt catataaaaa ttataaaatt cactagtttt       120
     atgattaatt caccttgaat caatcgatta atcgttagta gaatattatt ttaatcaata       180
     actataggtt taacaactgt tcatgaacaa aaatgaattt cgaaaatacc actagacact       240
     acagagctgc acaaaaaact ggttgcccac ttgactatcg ctgcaaatgt tcgccgtacg       300
     tttgaacagc tgtcacattt atgcgcacgg ttaagccgcc cgccggttaa tccgcccccg       360
     gataatcgac gttctactg                                                    379
//
ID   MARINERN8_AG repbase;    DNA;    INV; 1068 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   MARINERN8_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN8_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1068
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN8_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 25-25 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~50 copies of MARINERN8_AG in the genome (multiple
CC   subfamilies), they are ~99% identical to the consensus sequence.
CC   MARINERN8_AG copies are flanked by 2-bp target site duplications.
CC   This element has 35-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like DNA transposon.
XX
SQ   Sequence 1068 BP; 299 A; 241 C; 203 G; 324 T; 1 other;
     cccaaccaac caaaccgtgc tctttcgaag taaatttgct tcgatatagc ttcgatagaa        60
     gttctctacc gaaggtgtat caactttgat aggcagttcc taccgaagtt aggctcgggt       120
     gtttagccga aatgctacaa aagagaaaga aaaaaatctc tcgtatgctg ccgcgttctc       180
     gctcacacgc gcgccctgcc cccttttatt tacgtacgtg tttatagccc ctcctcctcc       240
     tcctcctcct cstcctcctc tcatctatct tcctacctta tgtgcagtgg ttatgtgttt       300
     ttaattgaaa ttggaaggag agatattcga tttatttatt acgtgcgatt taatcagaga       360
     attgaaacat ggtagcaggt ggatctactg ttcatcacaa gcgggcctaa cactttaact       420
     atttgtgaat tcgcgcgtga ggacgtaaaa ggcgcaataa taatggagcg gttctaacgt       480
     aaacagacaa aatcgctcag ctgaaaattt gatagagcgg aatagcattt cattgtaata       540
     gcattgctag tatatcatcc gcgcacccta tgaaccgtac ttttccaaat atcttaaaaa       600
     gtacgcattg tatgaaaaaa ccgtctttac aagatcgatt cagaatttca aaacacattt       660
     ggaaaaagtt ttttgctaaa agtgactttt gaaattttac tcagattaat gtttattcct       720
     ttaaattaat tcataaatgg ggtaagggaa ataatttata ctaatactaa tagaccacga       780
     ctccattgcc tgaaatattt agtgcctcaa agtagtatat cctctttgcc aagcgtttga       840
     gttaaactga ttcttcgcaa aatgtgaaga gagcgttcgg ccccccttca gatgcttcga       900
     cagagtgaag ctcctcccct tcctccattc gtcatccatc aatttttctc cgcgcactca       960
     cacatctaca cgcgcagctg ttcgcatggc aacacgtgag atgcgtgaca tgctttctcg      1020
     ctcatcacga aggatttgct tcgaaagagc tcggtttggt tggttggg                   1068
//
ID   MARINERN9_AG repbase;    DNA;    INV; 358 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   MARINERN9_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MARINERN9_AG; nonautonomous DNA transposon;
KW   mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-358
RA   Kapitonov V.V. and Jurka J.;
RT   "MARINERN9_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 64-64 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of MARINERN9_AG in the genome,
CC   they are ~96% identical to the consensus sequence.
CC   MARINERN9_AG copies are flanked by the TA target site
CC   duplications.
CC   This family is characterized by a target site specificity:
CC   MARINERN9_AG elements are inserted preferentially it the 10-bp
CC   acatTAatgt palindrome.
CC   The consensus sequence has 19-bp terminal inverted repeats
CC   (3 mismatches) and 21-bp subterminal inverted repeats (pos. 29-49
CC   and 329-309).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA
CC   transposon. The genome harbors several subfamilies of
CC   MARINERN9_AG.
XX
SQ   Sequence 358 BP; 112 A; 69 C; 65 G; 112 T; 0 other;
     gccggcatcg cgaataaatg aacacatttt aacagtcgtt taaagttcat tttggtttaa        60
     ccgagttcat ttgttgttca ttcctgttaa aataaacgat cgtcaaaaca gttaacgact       120
     gctcgatatc gcatataggc aaacacgggg aaaaaattcg agcagtataa ttaaacgact       180
     gttaatttgt atcgcatacg ctcttgacag tcgtttgttt aacggcggca taggaccagt       240
     cgttaaaatt aacaaatgaa ctcaatgcgt tcgcgatgcc aaattctagc aatttttaac       300
     gactctggtt aatttttaac gactgttaat tttaaaccaa ttctttcgcg atgccagc         358
//
ID   MARINER_AM  repbase;    DNA;    INV; 937 BP.
XX
AC   U19902;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Apis mellifera mariner transposon, transposase pseudogene,
DE   partial sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; AMMARINER;
KW   MARINER_AM; mariner; transposase.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   1-937
RA   Ebert R.P., Hileman P.J. and Nguyen T.H.;
RT   "Primary sequence, copy number, and distribution of mariner
RT   transposons in the honey bee.";
RL   Insect Mol. Biol 4(2), 69-78 (1995).
XX
RN   [2]
RP   1-937
RA   Ebert R.P.;
RT   "MARINER_AM.";
RL   Direct Submission to Genbank (17-JAN-1995)Paul R. Ebert,
RL   Entomology, University of California, Davis, Davis, CA 95616,
RL   USA.
XX
DR   GenBank; U19902; Positions       1     937.
XX
SQ   Sequence 937 BP; 335 A; 163 C; 168 G; 271 T; 0 other;
     ttgggttggc aactaagtaa ttgcggattt cagttgaagt tgatgacgat ctaatcaaag        60
     caataatcga ttcggatcgt cacagtacaa ctcgtgagat tgcagagaag cttcatgtat       120
     cacatacacg cattgaaaac cacttaaaac aacttggcta tgttcaaaaa ctcgatacat       180
     gcattcctca cgaactgaaa gaaaagcatt taatgcaacg tattaacagt tgcgatttgc       240
     taaagaaacg tagtagaaat gatccatttt taaaacgact gataactggc gatgaaaaat       300
     ggattgttta caacaatatc aagcggaaaa gatggtggag caagccacgt gaaccagctc       360
     aaacaacatt aaaaactggt attcatcaaa agaaggtttt gttatcagtt tggtgggatt       420
     acaaagaaat tgtctatttt gaactcttac cacccaaccg aacgatcaat tctgttgtct       480
     acattgaaca actaacgaaa ttaaacaatg cagttgaaga aaagcggtcc gaattgacaa       540
     atcgaaaagt tgttgtattc catcatgacg atgcaagacc acaaacatct ttggtcattc       600
     ggtaaaaatt attggagttt ggttgggatg ttttgccaca ttcactatat agtcctgacc       660
     ttgcaccatc tgattacttt ttgcttcgat ctttacaaaa ctccttgaat gataaaaatt       720
     tcaataatga tgatgatatc aaatcgtacc tgattcagtt ttttgctaat aaaaaccaga       780
     agttttatga acgtgggatt atgatgctgc ctgaaagatg gcaaaagatc attgatcaaa       840
     atgggcaaca cattacagaa aaaagttatt tagttccatg aaaaaattgt ctttgatttt       900
     ctaaaaaaaa tccgcaatta cttagttgcc aacccaa                                937
//
ID   MARINER_CA  repbase;    DNA;    INV; 1290 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Chymomyza amoena transposon mariner Camar1 transposase gene,
DE   consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARINER_CA;
KW   mariner transposon Camar1; transposase.
XX
OS   Chymomyza amoena
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Chymomyza;
OC   fuscimana group.
XX
RN   [1]
RA   Robertson M.H., Lampe J.D., Witherspoon J.D.
RA   and Soto-Adames N.F.;
RT   "Recent horizontal transfer of mellifera subfamily mariner
RT   transposons into insect lineages representing four different
RT   orders.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Chymomyza amoena transposon mariner Camar1 transposase gene,
RT   consensus sequence.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
CC   99% average similarity to consensus between 6 copies of the
CC   sequence from Chymomyza amoena.
XX
SQ   Sequence 1290 BP; 423 A; 217 C; 257 G; 393 T; 0 other;
     ttgggttgcc caaaaagtaa ttgcggattt ttcatatagt cggcgtttat aattttttta        60
     acagcttgtg actatttaat tgtatttttt cttttgacat ttattagctg tgactattag       120
     cttgctttag aaaaaaagtg cgcgtaattt tgtttacatt tgtttgtttg gcgccctttt       180
     taatatggag tccacaaaag agcatttccg tcatatttta tattattatt tccgtaaagg       240
     aaaaaacgca gagcaggttg ctaaaaagtt acgtgatgtg tatggtgata aagccttaaa       300
     agaaagacag tgtcaaaatt ggtttcgcaa attccgttct ggagattttt cacttaaaga       360
     tgagccacgt tcaggtcggc caaatgaagt tgatgatgac caaatcaaag cattaatcga       420
     attggatcgt catgtaactg agcgtgagat aggagagaag ttaaatatac caaaatcaac       480
     cgttcattat cacataaaaa gtcttggact ggtgaaaaag cttgatattt gggtaccaca       540
     tgaattgaaa gaaattcatt taacaaaccg aatcaacgct tgtgatatgc atcttaaacg       600
     caatgaattc gatccgtttt taaagcgaat cataactgga gatgaaaaat ggattgttta       660
     caataacgtt aatcgaaaac gatcatggtc caagcatggt gaaccagctc aaaccacttc       720
     aaaggctgat atccaccaaa agaaggttat gctgtctgtt tggtgggatt ggaagggtgt       780
     ggtatatttt gagctgcttc caaggaacca aacgattaat tcggatgttt actgtcaaca       840
     actggacaaa ttgaatgcag ccatcaacga gaaacggcca gaattgatca atcgtaaagg       900
     tgtcatattc catcaggaca acgccagacc acacacatct ttgatgaccc ggcaaaaact       960
     gagagagctt ggctgggaag ttttgatgca tccaccatat agccctgacc ttgcaccatc      1020
     agactaccat ttatttcgat ctttgcagaa ctccttaaat ggtaaaactt tcggcaatga      1080
     tgaggctata aaatcgcact tggttcagtt ttttgcagat aaaggccaga agttctatga      1140
     gcgtggaata caaaatttgc cgggaagatg gcaaaaggtt atcgaacaaa atggaaatta      1200
     tatatttgat taaagttcat tctaagtttt attaaaaatg catttacttt cttttaaaaa      1260
     atccgcaatt actttttggg caacccaata                                       1290
//
ID   MARINER_DMA repbase;    DNA;    INV; 1286 BP.
XX
AC   M14653;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.mauritiana transposable element mariner, complete cds.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; DMAMARINER;
KW   MARINER_DMA; mariner; transposase.
XX
OS   Drosophila mauritiana
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1286
RA   Jacobson W.J., Medhora M.M. and Hartl L.D.;
RT   "Molecular structure of a somatically unstable transposable
RT   element in Drosophila.";
RL   Proc. Natl. Acad. Sci. U.S.A 83(22), 8684-8688 (1986).
XX
DR   GenBank; M14653; Positions       1    1286.
XX
SQ   Sequence 1286 BP; 399 A; 270 C; 304 G; 313 T; 0 other;
     ccaggtgtac aagtagggaa tgtcggttcg aacatataga tgtctcgcaa acgtaaatat        60
     ttaccgattg tcataaaact ttgaccttgt gaagtgtcaa ccttgactgt cgaaccacca       120
     tagtttggcg caaattgagc gtcataattg ttttctctca gtgcagtcaa catgtcgagt       180
     ttcgtgccga ataaagagca aacgcggaca gtattaattt tctgttttca tttgaagaaa       240
     acagctgcgg aatcgcaccg aatgcttgtt gaagcctttg gcgaacaagt accaactgtg       300
     aaaaagtgtg aacggtggtt tcaacgcttc aaaagtggtg attttgacgt cgacgacaaa       360
     gagcacggaa aaccgccaaa aaggtacgaa gacgccgaac tgcaagcatt attggatgaa       420
     gacgatgctc aaacgcaaaa acaactcgca gagcagttgg aagtaagtca acaagcagtt       480
     tccaatcgct tgcgagagat gggaaagatt cagaaggtcg gtagatgggt gccacatgag       540
     ttgaacgaga ggcagatgga gaggcgcaaa aacacatgcg aaattttgct ttcacgatac       600
     aaaaggaagt cgtttttgca tcgtatcgtt actggcgatg aaaaatggat cttttttgtt       660
     agtcctaaac gtaaaaagtc atacgttgat cctggacaac cggccacatc gactgctcga       720
     ccgaatcgct ttggcaagaa gacgatgctc tgtgtttggt gggatcagag cggtgtcatt       780
     tactatgagc tcttgaaacg cggcgaaacg gtgaatacgg cacgctacca acaacaattg       840
     atcaatttga accgtgcgct tcagagaaaa cgaccggaat atcaaaaaag acaacacagg       900
     gtcatttttc tccatgacaa cgctccatca catacggcaa gagcggttcg cgacacgttg       960
     gaaacactca attgggaagt gcttccgcat gcggcttact caccagacct ggccccatcc      1020
     gattaccacc tattcgcttc gatgggacac gcactcgctg agcagcgctt cgattcttac      1080
     gaaagtgtga aaaaatggct cgatgaatgg ttcgccgcaa aagacgatga gttctactgg      1140
     cgtggaatcc acaaattgcc cgagagatgg gaaaaatgtg tagctagcga cggcaaatac      1200
     ttagaataaa tgattttttc tttttccaca aaatttaacg tgtttttgat taaaaaaaaa      1260
     acgacatttc atacttgtac acctga                                           1286
//
ID   MARINER_HC  repbase;    DNA;    INV; 1255 BP.
XX
AC   M63844;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   H.cecropia mariner-like repetitive element.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; HCMARINER;
KW   highly-repetitive sequence; MARINER_HC; mariner-like element.
XX
OS   Hyalophora cecropia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Saturniidae; Saturniinae; Attacini;
OC   Hyalophora.
XX
RN   [1]
RP   1-1255
RA   Lidholm A.D., Gudmundsson H.G. and Boman G.H.;
RT   "A highly repetitive, mariner-like element in the genome of
RT   Hyalophora cecropia.";
RL   J. Biol. Chem 266(18), 11518-11521 (1991).
XX
DR   GenBank; M63844; Positions       1    1255.
XX
SQ   Sequence 1255 BP; 405 A; 262 C; 234 G; 354 T; 0 other;
     ttaatattag gtccttacat atgaaattag cgttttgtcg tactgaccac tttgatctga        60
     aatatctcct ctttggttaa gaattccaat tccaattcat ttagctggta catttgagat       120
     ttgaaaacag tcattcattt gttttttcct cattattttt tccttaggca tcgtttatta       180
     ccgcacaatg gcaaacatga aatatcggta tatttacgag tacgagttct accgtggcac       240
     cagtgctgca gaaacagctc gaaggattaa taatgtatac ggtgctggtg ccgcaaaaga       300
     aagcaaggta cgtttttggt ttcaacgttt tcgttctgga attttcgacc ttcagaacca       360
     accccgtgga cggccggaga tcaaagtgga aaatgaagaa taaaggctat tgtgtaagcg       420
     gatccatcac aaagcacttc agagatagct gcaggcttcg gggtaagtga taaaactgta       480
     ttaatctact tgaagcaaat cggaaaagta aaaaaacttg aatgatgggt acctcatgaa       540
     ttgagtgaat cgaacttgca aacacgcgtc gactgctatg ttactttgct caaccgacac       600
     aataatgaac gaaaaatgta cgataatcgg aagggctcgt tgcaatggct gaaccctgga       660
     gacccagcca aatcctgccc taaacgataa ttgactcaga aaaagttact tgtgagtgtt       720
     ttggtggact agcgccggtg tcattcacta cagctttcta aaatgtggcc aaacgattac       780
     agtagatatc tattatcagc aactgcaagc catgaaggaa gaactagctg ctaaacatcc       840
     gagattggtc aatcgctcta ggtcactgct gcttcacgac aacgcaagac cacacactgc       900
     taaacaaaca accactaagt taaataagct acaattggaa tgtctgcgac atccaccgta       960
     ctccccggac cttgctccaa tagattacca ttttttccga aatttggaca acttcttaca      1020
     tggaaaaaaa ttcaactcct attcggtagt ccaaaccgcc ttcaaagagt ttattgatcg      1080
     tcgcccccat gcttttttta ataaagggat caatgaacta cctgtaagat ggcaaaagtg      1140
     cataaataac aacggtgcat actttgataa attaaatata ttttacaaaa aaataattga      1200
     cttcttattc ctcccttaca aaacgccaat ttcatatgta aggacccaat attaa           1255
//
ID   MARINER_SI  repbase;    DNA;    INV; 1278 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   06-FEB-2014 (Rel. 19.02, Last updated, Version 2)
XX
DE   Red fire ant mariner transposon sequence - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Inverted repeat; mariner transposon; mariner transposase;
KW   MARINER_SI.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Krieger J.M. and Ross G.K.;
RT   "Molecular evolutionary analyses of mariners and other
RT   transposable elements in fire ants (Hymenoptera: Formicidae).";
RL   Insect Mol. Biol 12(2), 155-165 (2003).
XX
RN   [2]
RP   1-1278
RA   Gentles A. and Jurka J.;
RT   "Fire ant mariner sequence.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
RN   [3]
RP   1-1278
RA   Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (06-FEB-2014).
XX
DR   [3] (Consensus)
XX
CC   Average similarity to consensus 98%.
CC   [3] Consensus update. TA TSD.
XX
SQ   Sequence 1278 BP; 379 A; 273 C; 298 G; 328 T; 0 other;
     ttaggtgtta aacttaattc ctgccgctcg ctactagagg gtgctggctc caacgctggc        60
     gagtttcgac gatgaagtca tatgtctttt gtagtttaga catcgctgaa agtgattcaa       120
     tcctcataga ttagatttct cgacgccaaa gacattttcc aatcgactga aaatgaatcg       180
     cgataagctg tttttccgac atgtgcttct tcactacttc gacctcaaga aaaccgcagc       240
     tgaagcgcat cgcttattat ccgaagtgta tggtgatgaa actccatcgg aaagaacatg       300
     tagagtttgg tttgaacgct tccgaaacgg tgattttgat gtgagagaca aagaacgtcc       360
     aggacagccg aaaaaatttg aagatgtcga gctgcaagaa ttgctcgatg agaatccagc       420
     ccaaacgctt ttagagttgt cggaacagtt aaatgttact ccaatggccg tctcaaaacg       480
     cttgcatgcc atgggaaaga ttcataagga agggaaatgg ctaccacatg agttgtcaga       540
     aaatgccatt ttgaatcgtt tgactattgc gacttctttg cttgccaggc aaagaaaaaa       600
     gagttttttg tggcgcatcg tgactggcga tgaaaaatgg atttattttg ataatcccaa       660
     gcggaaaaaa tcatgggtgg accccggcca accatccgct tcaacgccga agaggaatat       720
     tcacgggcat aagaccttgc tgtgcgtttg gtgggaccag aaaggtgtgc tgtattacga       780
     actcttgggt ccaaatgaaa ccgttacagc tgatcgctac caacagcaat tataccgatt       840
     gagtgacgta ttgatgcaaa aaagatcatc cgtagtcaac aatcgatgca aagtcatttt       900
     gttgcatgat aacgctcgac cgcatgtcgc gaaaagcgtg aagcaggtac ttcgcgagct       960
     tgaatgggaa gttctgccgc acccagcgta ctctccagac ttggcaccgt cggattacca      1020
     tctcttccga tcgatgcaac acgcacttac ggacacacac ttctccagtt acaacgaagt      1080
     ccaaaaatgg gtggatgaat ggttcgcctc gaaagacacc gcgttctacc gtcgtgggat      1140
     tgccctgttg ccggagagat gggaaaaagt agtagaaaat gaaggaaatt actttgatta      1200
     aggtattcat tcatcttccc ttcgaaacaa atcgatttta tagacgaaaa aacggcagga      1260
     attaagttta acacctaa                                                    1278
//
ID   MARINER_TF  repbase;    DNA;    INV; 1293 BP.
XX
AC   U40493; U76904; U76905; U88160; U88161; U88164;
XX
DT   20-FEB-2000 (Rel. 5.01, Created)
DT   20-FEB-2000 (Rel. 5.01, Last updated, Version 1)
XX
DE   Mariner sequence from tephritid flies - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; mariner;
KW   MARINER_TF.
XX
OS   Trirhithrum coffeae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Trirhithrum.
XX
RN   [1]
RA   Torti C., Gomulski M.L., Malacrida R.A., Capy P. and Gasperi G.;
RT   "Characterization and evolution of mariner elements from closely
RT   related species of fruit flies (Diptera: Tephritidae).";
RL   J. Mol. Evol 46(3), 288-298 (1998).
XX
DR   [1] (Consensus)
XX
CC   Based on the following accession numbers: U40493, U76904, U76905,
CC   U88160, U88161, U88164.
XX
SQ   Sequence 1293 BP; 403 A; 254 C; 297 G; 337 T; 2 other;
     ttggatgagt gcataagttc gtgcccgatt ccgctggatg ccgtwcgaat cgtttgagag        60
     tggcgctcgt gaaagaaata tatacatatt atatatcgtt ggaaaggtga cagtccgaac       120
     tgtaaatcaa gcataaaata acttcatttt gatttgagtt gcttagtgaa aagacgcatg       180
     gaagatgrac aacgaaaaag atcatatgcg tcatattatg ttatacgaat tccgcaaagg       240
     aaaaacagtg ggcgctgcaa ctaaagatat tcgcgaagtt tatttggacc gtgctccagc       300
     actccgcaca gtaaagaaat ggttcgcgaa atttcgttct ggagatttta acctcgaaga       360
     tcaacctcgc agtggacggc cttctgagct tgatgacgat gttctaagga ctttagttgc       420
     gaataactca cgtatttcga cggaagaggt tgccagtgaa ttgaacgtca acaaatcaac       480
     tgcgtttcgt cgtttaaaaa aggttgggta cactttgaag ctcgatacat gggtgccaca       540
     tcagttgagt gaaaaaaaca aagtggaccg tatgtcaaca gcaatttctt tgcttcccgg       600
     acggatcaaa aacgaacctt ttttggatcg gctcgtgact ggtgatgaaa aatggatcct       660
     gtacaacaat gttcaacgca aaagaacatg gaaacaggca cacgaagggg cggaaccgat       720
     gtcgaaaggt ggattgcatc cgatgaaggt actgctgtgc atttggtggg atatccgagg       780
     cgtgatctat tttgagctct tgccagctgg agaaacgatc actgccaaca agtattgtca       840
     gcaattggtc gaattgaaga aagcaattga tgaaaaacgt ccgattttgg ccaatcgcaa       900
     aggagttctt ttccatcatg acaacgccag gccacatgtt gcaaaaccga ccctggccaa       960
     actgaaggag attgaattgg gaaatcatgc cgcatccccc atattcaccc gacattgcac      1020
     cttctgatta ttcatttgtt tcgatcgctg cagaacaatt tgaatggaaa aaaatttaaa      1080
     aatgtggaag acgtcaaaaa ccaccttgac acctttttca acgagaaacc gcgcgatttc      1140
     tatgaatcag gcatccgtaa attggttgaa cgttgggagt ggattgccga acatgatggc      1200
     gaatacataa ttgattaata aaagcgcttt cttcaaaaaa tttcaatttt agtttgcact      1260
     tgaaatcggg cacgaactta tgcactcatc caa                                   1293
//
ID   MarN-1_DEu  repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.06, Created)
DT   21-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MarN-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-471
RA   Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 751-751 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to  consensus. Possibly active.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 471 BP; 143 A; 86 C; 79 G; 163 T; 0 other;
     tacgaggtgt gttcaaaaag taaggtgact cttcaaattt cgcgaatttc aaatttttcg        60
     attatcgatt tttttgtttt gttatattgg tacactcttc cctaacatct gtaccaagtt       120
     tcaatggaac atcctctttt gtttggttgt gagaggcgta aagttacaag ttgttttgcg       180
     agctcggcga ttttttgcta tcgaaaaata tggatcaaag gatttggatt ttttggccaa       240
     aaacaacacc acaataatgc ctcagccacc atattcaccg gatttggccc catgtgactt       300
     tttcttgttc ccaaaactga agataatcga aaaatttgaa aaatttgaaa tttgaaaagt       360
     caccttactt tttgaacaca cctcgtataa cttctaaaag gtttcgataa tcgaaaaatt       420
     tgaaattcgc gaaatttgaa gagtcacctt actttttgaa cacacctcgt a                471
//
ID   MarN-2_DEu  repbase;    DNA;    INV; 1655 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.06, Created)
DT   21-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila eugracilis genome: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MarN-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1655
RA   Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 752-752 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to  consensus. Possibly active.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1655 BP; 516 A; 280 C; 277 G; 582 T; 0 other;
     tacagtcggc acataattta ttcgtacacc catgagttgg aagtttattc cttaatatct        60
     cgagaaatac gtaacggaaa ttaaaatgta atatctcaaa tgaaagatat acatttcgag       120
     aatatatttt aaacataaaa ttaacaagtt ttaacttaaa tactagataa tttccttaat       180
     aacacaaaaa agtcattttt ttacgcacaa aaattattcg tacacttcat aaaatgttga       240
     aaaaaaacaa caattccaaa gatttaagga ctttaatctt tagtgggtcc ttcgttggcc       300
     ttaatggaag cttgtaaacg tcgacacatg ctttttataa agttgctcgt ctcgtcagca       360
     tcagttgaat cccattcagg tattaatgcg gtttttaggg attccttcga ggatatgttg       420
     tccttttctg gaggatatcc cataaatgtt ctatggggtt caaatctggt gattgtagag       480
     tcggtttttg ctccttgcag tgatataaaa gccactattg cactaaatac gacaaatatt       540
     tcgggtcgtt atcttattga aatacgaaag acgctggatt ctgtccaagt ttaagggcac       600
     ttggaattaa attttggcct aaaatgtctt tatacataaa tttattaatt ttatcttcca       660
     aaaagaccat tcgacccact ccacctgcag ctgtacaccc ataaaccatc acattctggc       720
     caacgtgctt aaaagttgga atcaagtttt ttccttcatg gcttcatttg ccttttgaca       780
     tactttaaaa ggaccgccgt gtccaaaatt tttaattttt gatttgtcaa taaatataac       840
     gttttcccaa aacaattccg gcttgcttac atgcactttt gcgatctcca aacgcatttt       900
     ttgttataat cagaaatcaa tgggttttta cgaacaactc taccatgtat accagcattg       960
     tgcagggtgt tccggatggt ttgggaacaa catttttttc tgaaggcttc tctagggttt      1020
     taagaattgt tgtagatgtt attctgggat tttgtaatgg cgtatttaca actttatgct      1080
     cctcccgtgg tgtcaatatg tggttccttc cagattttct atgttctact gcaaattctc      1140
     cagtgtttac gtattttttt tataaaactt cgcattgtgg aaggtgactt gacaatattt      1200
     ctaccaattt cgggttaatt gcggttcgct aaatataatt ttattatagt ttttcgaaaa      1260
     tttagggata aatcttgacc ccgacccatt tcgtccaatt acagcaaaaa aaagcagcga      1320
     aactaactaa acaactttga gaatagtaca ccgaagtttg ctccgaagta cagttcaaaa      1380
     aagaatcgcg gattaccgtt ggattcagaa atagaagtca agaatgagaa gtgtacgaat      1440
     aatttttgtg cgtaaaaaaa tgactttttt gtgttattaa ggaaattatc tagtattaaa      1500
     gttaaaactt gttaatttta tgtttaaaat atattctcga aatgtgtatc tttcatttga      1560
     gatattacat tttaatttcc gttacgtatt tctcgagata ttagggaata aacttccaac      1620
     tcatgggtgt acgaataaat tatgtgccga ctgta                                 1655
//
ID   MARWOLEN1   repbase;    DNA;    INV; 1643 BP.
XX
AC   AAGB01000014;
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   16-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Mariner-type transposon from Wolbachia endosymbiont of Drosophila
DE   ananassae.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARWOLEN1.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RA   Salzberg S.L., Hotopp J.C., Delcher A.L., Pop M., Smith D.R.,
RA   Eisen M.B. and Nelson W.C.;
RT   "Serendipitous discovery of Wolbachia genomes in multiple
RT   Drosophila species.";
RL   Direct Submission to EMBL/GenBank/DDBJ (03-FEB-2005).
XX
RN   [2]
RA   Salzberg S.L., Dunning Hotopp J.C., Delcher A.L., Pop M.,
RA   Smith D.R., Eisen M.B. and Nelson W.C.;
RT   "Correction: Serendipitous discovery of Wolbachia genomes in
RT   multiple Drosophila species.";
RL   Genome Biol 6(7),  (2005).
XX
RN   [3]
RP   1-1643
RA   Jurka J.;
RT   "MARWOLEN1: Mariner-type DNA transposon from Wolbachia
RT   endosymbiont of Drosophila ananassae (procaryote).";
RL   Repbase Reports 5(9), 265-265 (2005).
XX
DR   EMBL/GenBank/DDBJ; AAGB01000014; Positions       1    1643.
XX
CC   The transposase homology was identified in ref. 1. The transposon
CC   has ~220 bp long TIRs. This transposon is classified by its host
CC   rather than the endosymbiont due to its similarity to other host
CC   transposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           395..1396
FT                 /product="MARWOLEN1_1p"
FT                 /translation="MRKLSGEIQNNIVSLTESGNSTRQIAERLGISQSAVV
FT                 SIQKRRKLTPKPQVSGRKKLLKDSDARLMMSEMRKNKNLTPKGACLAINKN
FT                 VSEWTARRALQDIGYMSIVKKNKPALSDKNVKARLKFAKDHKNWTIDDWKR
FT                 VVWSDESKFNRFQSDGKQYCWIRPGDRVQRHHVKQTVKHGGGNIMVWGCFT
FT                 WWHIGPLQLVEGIMKKEDYLRILQTNLPNYFDKCAYPEKDIIFQQDGDPKH
FT                 TAKIVKEWIGKQHFQLMEWPAQSPDLNPIENLWSIVKRRLGQYDSAPKNMG
FT                 DLWERVAVEWSRIPQDILRNLVESMPKRVTEVIVNKGLWTKY"
XX
SQ   Sequence 1643 BP; 567 A; 265 C; 323 G; 488 T; 0 other;
     tacagtggcg agcaaaactg agtgcatgtt cacaactctc actttggcca tcaataaaaa        60
     cacaaccgct tatgcaaatt caataatttt ttttatatta ttaatcttaa ttaatttata       120
     acttatttta tgagaaaaaa caaatttagc atatatattc aaagacttag aataaaaaaa       180
     ctaaataaac tcacataaac tcaattttgc acgttttaag tcttgtaact gtttttgatt       240
     ttaacatctc ttatcagtat aaatcggcca gatttaccgt tatatttctt ttaatgctat       300
     tttcggtggt cattgattag ttaaaagcgt gtttttgcag agcaaagttc tttagggtga       360
     ataaatataa ataattagtg ataaaatcct taaaatgcga aaattatcgg gagaaattca       420
     aaataatatt gtcagcttga ccgaaagtgg caattccact cgtcaaattg ccgaaaggct       480
     tggaattagc caatctgcgg tggtctccat tcagaagagg cgaaagttga cccccaaacc       540
     tcaagtctca ggccggaaaa aattattgaa ggactcagat gctcgactaa tgatgtccga       600
     aatgcggaaa aataagaatt taaccccaaa gggtgcttgt ctggcaataa ataaaaatgt       660
     cagcgaatgg actgctagga gagcattgca agacatcgga tatatgtcga tcgttaaaaa       720
     aaataagcct gcgttatccg acaaaaatgt caaggctcgg ttaaaatttg caaaagatca       780
     taaaaattgg accattgatg attggaaacg agttgtctgg tctgatgagt caaaatttaa       840
     ccgttttcag agtgatggaa aacaatattg ttggattcga ccaggcgata gagtccaaag       900
     acaccatgta aagcaaaccg tcaaacatgg cggtggaaac attatggttt ggggatgctt       960
     tacttggtgg catattggac ctctacaatt agtcgaaggt atcatgaaaa aagaggacta      1020
     ccttcgaatc cttcaaacaa atcttccgaa ctattttgat aaatgtgcct accccgagaa      1080
     ggatatcatt ttccaacaag atggggatcc aaagcacaca gccaaaatag tcaaggaatg      1140
     gattggaaaa cagcactttc aattgatgga gtggcctgca caaagtccag acctcaatcc      1200
     aattgaaaat ctatggtcaa ttgtgaaaag acggcttggg caatacgatt ctgctccaaa      1260
     aaacatgggc gacctctggg agcgtgttgc ggtggaatgg agtcggattc cgcaggacat      1320
     ccttcgaaat ttggtcgaga gtatgccaaa gcgcgtaaca gaagtcattg taaataaagg      1380
     gctctggact aaatattagc aataatgtag ttattaagtt ttgattgaaa cgtgcaaaat      1440
     tgagtttatg tgagtttatt tagttttttt attctaagtc tttgaatata tatgctaaat      1500
     ttgttttttc tcataaaata agttataaat taattaagat taataatata aaaaaaatta      1560
     ttgaatttgc ataagcggtt gtgtttttat tgatggccaa agtgagagtt gtgaacatgc      1620
     actcagtttt gctcgccact gta                                              1643
//
ID   MAR_DW      repbase;    DNA;    INV; 610 BP.
XX
AC   AF518731;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   Drosophila willistoni Mar miniature inverted-repeat transposable
DE   element, complete sequence.
XX
KW   hAT; DNA transposon; Transposable Element; MAR_DW;
KW   hAT MITE family; Inverted repeat.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Holyoake J.A. and Kidwell G.M.;
RT   "Vege and Mar: Two Novel hAT MITE Families from Drosophila
RT   willistoni.";
RL   Mol. Biol. Evol 20(2), 163-167 (2003).
XX
DR   Genbank; AF518731; Positions       1     610.
XX
SQ   Sequence 610 BP; 189 A; 122 C; 111 G; 188 T; 0 other;
     cagaggtagg cacaaagaga gccagatcaa actgtcaatg tatgcgtgcg cttgcttgtg        60
     tacgtaagct gctttacact gcgcgaatcg tatgtgaaga aacgaataaa aaaattaaac       120
     tgcaagtgaa actgcggaat tttcccacaa ccctttttta ccgagtcgcc ttaaaaaaca       180
     aagtacagtc atgagtcttg gattcctttt accttaatgt cataaaaatg aatgcatatt       240
     ttgtatcggc tattatatgt atatattttt catactatac atatatgtgc atacatgtat       300
     atcttacatt tatattacat tatgcatgtt cgcttatatt ataatatact ttttacccta       360
     tagggacaaa atataaataa tagcaaaata tttttaaagt tgccatgtac gaaagtgaag       420
     cattaatttt tctgcgtgta gctgcgtaac aaagcgacat agtactgctt tcgtcaaaag       480
     tctgtgcgac actagctgtt tttttacgct ctcaacttgt acttcgtgct cacatcggca       540
     tgcacacaga cggccacacg agcaattgcc gagcaaaagt gcccgcacgg gctatgggcg       600
     cctacctctg                                                              610
//
ID   MAX_I       repbase;    DNA;    INV; 7914 BP.
XX
AC   AJ487856;
XX
DT   14-NOV-2002 (Rel. 7.10, Created)
DT   14-NOV-2002 (Rel. 7.10, Last updated, Version 1)
XX
DE   MAX_I is an internal portion of the MAX endogenous retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BCDRP superfamily;
KW   BEL-PAO superfamily; MAX; MAX_I; MAX_LTR; endogenous retrovirus;
KW   polyprotein; internal portion.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7914
RA   Marsano M.R. and Caizzi R.;
RT   "Max: a new retrotransposon of Drosophila melanogaster which
RT   interrupts the Bari-1 repeats in the heterochromatic h39
RT   region.";
RL   Unpublished.
XX
RN   [2]
RP   1-7914
RA   Marsano M.R. and Caizzi R.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (20-MAY-2002)Marsano R.,
RL   DAPEG-Section of Genetics University of Bari, Via Amendola,
RL   165/A, 70126, ITALY.
XX
DR   Genbank; AJ487856; Positions     394    8307.
XX
CC   MAX is a family of endogenous retroviruses that belong to the
CC   BSCDRP (or BEL-PAO) superfamily.
CC   It is flanked by 5-bp target site duplications.
CC   MAX_I is 66% identical to BATUMI_I.
CC   MAX_I encodes the 1830-aa MAXp polyprotein (positions 1389-6891)
CC   and it is flanked by 99% identical MAX_LTR long terminal repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           1392..6878
FT                 /product="MAXp"
FT                 /translation="PLEGDKKKTPAPGKEQKFNPQSPISTRGRPAPKSVSP
FT                 RVKTATPTPKPKVLPSTSSKTTPRLVISRPVTRASSESSLSRKSESPSAVG
FT                 TDFLRVTRSTTKRMASSEQPTPANAALHKFIAVSDRVSLFEAKINTPDQAS
FT                 PSLHTLQVRLQQVRALWDKVEREYETCSDLMAQEGSLDTVPILQAKYDYCY
FT                 SVYESCAAQIGETIDRATPQVAQAPSQPLISSGCRLPPCDTEVFDGDYLRW
FT                 PTFRDLFTAIYVNNPRLTPVEKLFHLLTKTSGEAKAIVAKSPLTNDGFASA
FT                 WEALRDRFQNKRLLVNSQLKLLFNLSSISQESGHALKELQSTIQGCLTALE
FT                 HSQVSTENWDCILVFLCASKLPKQTLSLWEQSLTAKSEIPAWEEMNAFLSE
FT                 RYRTLEAIEDMKPTQAVPKRLQSFETKVSTKQKGCDICSKENHPVRLCPRF
FT                 LQMSVDSRSGYIKKKQLCLNCFARGHQLRDCTSMHSCFTCKGRHHTLLHRS
FT                 PPNSENASSSTSPPTQQLPRPSSRNASASTSAVQNFFASGTSAVLLSTAMI
FT                 DVCHLGTNYRARALIDSGSEATFISERLFNLIKLPFRNTRTQVSGLNHSVS
FT                 AKSSKLCHFGIRSPTKPGLQLDTEAYVLPELSGKLPSYPIPRNSLKDLPAL
FT                 RWADPTFFESSQIDVLIGADILPSIMMDGTRQNICGSLLGQETIFGWVLTG
FT                 PISKGKPKRVASFTTQVHQTGDPDSLDTLLSKFWEVEDLPVKMVKESDSYC
FT                 ERNFLQTTTKDASGRYVVTLPFRDPENTGSDLGYSRSIALAQFLRNENRLK
FT                 RDFPLKEQYDSVIQEYLDLGHMKEVPPTHNSPSYHLPHHAVVKPESTTTKL
FT                 RVVFNASSPSANGISLNDILHAGPVLQSDLTIQVLKWRYFQYVFSADITKM
FT                 YRQIWVDPKHTPFQRILFRNKEGDIRDFELKTVTFGVNCAPFLAIRVLQQL
FT                 AEDIQVPFPNASRIIQQHMYVDDVLAGANSVNEAQSSIRELQAALSASGFP
FT                 LRKWTSNNKSVLKDVPAEHLLHSEFLDIDAESTAKTLGIRWRAKSDEFYFV
FT                 PPDIVVEASYTKREVLSQIARLFDPAGWLAPFIIRSKIFMQEIWLQNLGWD
FT                 DKLPTEMSQRWQSFLEEYSDLNQIRVPRWIWYQPEVVIEHHGFCDASQRAY
FT                 GAAIYIRVEMGQKILTRLLTAKTRVAPVKTVSLPRLELCGAVLLTEMVTAI
FT                 LPHMPSASSDIRCWTDSTIVLAWLRKPACNWTTFVANRVAKITQATPVDCW
FT                 AHVRSEQNSADLASRGVSLQELAENHLWWHGPEWLQGPRELWPAQSDTLPV
FT                 TELEQRAVKVHFVKGPSIDFLERFSKLDKALRVLVYVQRFFKRCRKGSFLP
FT                 SSRPTSEEIREAERTLTSIAQRRAYGQELQHLTEKRPLPVSSPLVTLFPFI
FT                 DQHGLLRACGRLTASKTLQYDERHPILLPYDCRLSRLIVQFTHQITLHGGS
FT                 QLIVRLIRTKYWIPKIKNLVKAVVNPCKICTIYKKRLQTQLMGDFPTDRVS
FT                 FSRAFTYTGIDYAGPFEIKNYTGRACLITKGYVCVFVCFSTKAIHLEPTSD
FT                 LTTEKFLAAFARFVARRGCPQRVHSDNGKTFVGAAALISRDFLQAIKESVT
FT                 DAYSHQGLVWRFIPPGAPHMGGLWEAGVKSFKTLFLKSTSVRKYTFEELAT
FT                 LLAKIEACLNSRPLSPMSEDPSDLLALTPGHFLIGGPLLSTAEPEIKGEAK
FT                 SIINRWQHLKAQHQQFSARWKEEYLKELHKRSKWQFPTRNLQADDMVVVKE
FT                 DNLPPNEWRLGRIVSAFPGADERIRVVEIRTSRGTIKRPVHKVILLPMEDK
FT                 ESSVPRD"
XX
SQ   Sequence 7914 BP; 2077 A; 2123 C; 1753 G; 1961 T; 0 other;
     tggtccttcg agccggatga gctctgatcc tgccagcgct ccttgcggaa aattcaagat        60
     aagtacggct ttaaatccta ttccgtccgt ggtcgccatt ttcgtttttt ccaacggcgt       120
     ttattctttc cgtccatccg tatcaagtga aaagtgaaaa tatataagta catgcgccca       180
     gccaccgcga ttactttttt ttttaagtgc ataaacaagc actttgccaa taccggcccc       240
     ctaattcgtc taacggtgct ccgctgatat ccaagcgcat gtacatatat acatatacac       300
     actgtccaaa attcactgct atcgtccgct gctaaactgc tgtttttttt tttgtgcctc       360
     aataaaatat acaatacaat acaatataca aatttaatta aattcaataa aatatacaat       420
     acaatacaat gtacaaattt aattaaattc aattaaatat acacatacat ataatcacca       480
     aaaatttcac atacacacaa atatacatag ccatatacat acattacgac atatccattg       540
     tcatccaacg atattcacat acacacagtc gcgacgtaca cagacttgcc aagtgcaagt       600
     tctttcgtct cctctttgtt cgttattgcc ctgacaaaaa aaccagcgca tagcgacgag       660
     agaataccct attgtcgaga cataaaacaa aataaataag tccgacgata aaatttaaaa       720
     ataaatttta aaatatttta tttatttatt tttattattt aataaataat ttaataaaaa       780
     aaagggagag aaacgattgt tttaattatt attattcttg attattagtt aataattatt       840
     taacccaaat aataattttt ttttttttta caagctattt ctggctccca tttctggttc       900
     ctaaattaca ataataaaat tgtggtccta aatccggtag ctatttttat aaatttaaac       960
     ttgaattttc tagctatttt ccatatatta gctattgttt ttcgggattt ccagtcgata      1020
     gcgatttttt ttataaatcc ttggctattt tccagactcc agccggtagc tatttttttt      1080
     gcttttcggg atttttcagt cggtagcgat tttttataaa tccttggcta ttatccagac      1140
     tccagctggt agctattttt tttttttttt tttagctatt ttttcagaaa ttgcaataaa      1200
     ctgaatttta gctatattgt gcttcaatct ccagatccca attgcaacct tctcaattta      1260
     agtttttttt ccagttgatt taagatctat tggggcctta tttcacaaaa attgagattt      1320
     tttttttttt tttttccttc gtgctccaat ctccttcttg acttccttct cctagggcat      1380
     agctgagcat gcccctagag ggagacaaga aaaagacacc cgcacctgga aaagaacaaa      1440
     agttcaaccc gcaatctccg atatccactc gcggtaggcc agcacccaag tccgttagtc      1500
     ccagggtcaa aaccgcgact cccactccga aaccaaaggt tttgccatcg accagttcga      1560
     agacaactcc taggttggtc atttcccgac cagtgacgcg agcgtctagt gagtcttctc      1620
     tatcgagaaa atccgagagt ccctccgctg tcgggaccga tttccttcgc gtcacacgct      1680
     ctaccacaaa gagaatggca tcctctgaac agccgacgcc cgcaaacgca gcgttgcata      1740
     aattcatcgc cgtcagcgat cgcgtaagcc ttttcgaagc gaagatcaac actccagatc      1800
     aagcctctcc gtccctacac acgttacaag tccgtctgca acaggtgcga gccttatggg      1860
     acaaagtgga aagagagtac gaaacatgct ctgacctaat ggcccaagaa ggatccctag      1920
     acacagtgcc tattctccag gccaaatatg actactgcta ctcagtatac gagtcatgtg      1980
     cagcacaaat tggcgaaaca atcgacagag caacgcctca agtcgcgcaa gcaccctctc      2040
     agccgctaat ttcgtccggc tgccgcttac ctccatgcga cacggaagtc ttcgatggcg      2100
     actacctccg atggcccact ttccgggacc tattcacggc aatttacgta aacaacccca      2160
     ggctgactcc ggtcgagaag ctattccacc tccttaccaa aacaagtggc gaagcaaaag      2220
     ccatcgtggc gaaatctcct ctcacgaatg atggttttgc ttcggcttgg gaggcgcttc      2280
     gagatcggtt ccaaaataag cgacttttag tcaacagcca gctcaagctt ctttttaact      2340
     tgagctcaat ttcgcaagaa tctggtcatg ctctaaaaga gctacaatcc acgattcagg      2400
     ggtgtttaac ggcactagag cattcccagg tatccacaga aaactgggat tgtatcttgg      2460
     ttttcctttg cgcgagcaaa ctgccaaagc agaccctgtc cttatgggaa cagtcgctaa      2520
     ctgccaaatc cgagatccca gcttgggaag aaatgaatgc cttcctgagc gaaaggtatc      2580
     ggacattgga agccatcgaa gatatgaaac cgactcaggc ggttcccaaa aggcttcaat      2640
     ccttcgagac aaaggtcagc accaaacaga aagggtgtga catatgttct aaggagaacc      2700
     atccggtacg attgtgcccg cgttttcttc aaatgtctgt tgactcgcgc tccggatata      2760
     taaaaaagaa gcagctatgt ctgaattgtt ttgccagagg tcatcagcta cgtgactgca      2820
     caagcatgca cagctgcttt acatgtaaag gcaggcacca tacgctgctg catcgcagcc      2880
     ccccaaattc cgaaaatgcg agttcctcaa cctcgccccc tacacagcaa cttccgagac      2940
     cctctagcag aaatgcatcg gcaagcacct cagcggtgca aaatttcttc gcgtccggca      3000
     cttcagccgt cctactgagc acagcgatga tagacgtgtg ccatttgggg acgaactacc      3060
     gagcccgagc cttaatcgac tcgggatccg aggcgacgtt catttcagaa cgcctgttca      3120
     accttatcaa gttgccattc cgcaacaccc ggacccaagt ctccgggtta aatcattcgg      3180
     tctccgcgaa atcctcgaag ctgtgtcact tcgggattcg ctctccgact aagccaggtc      3240
     tacagttaga cactgaagcg tacgtccttc cggagctctc aggcaaactg ccctcctatc      3300
     cgatccctcg gaattctttg aaggacctgc ccgcactccg ctgggcagat cctacctttt      3360
     ttgagagctc tcaaattgat gtactgatcg gggctgacat tctaccatcc ataatgatgg      3420
     atggcacccg acaaaatatt tgcggctcgc tcctgggcca agaaactatt ttcgggtggg      3480
     tgctaacggg gccgatttcc aagggtaagc cgaaacgggt cgcatccttc acgacccagg      3540
     tgcaccaaac aggcgaccct gattcgctcg acacgcttct cagcaagttc tgggaggtgg      3600
     aggatctacc agtaaagatg gtaaaagagt cggactccta ttgtgaaagg aacttcctcc      3660
     aaacgaccac aaaagacgca agcgggaggt acgtggtgac gctcccgttc cgggatcccg      3720
     agaataccgg atccgattta ggatattcaa ggtccattgc gctagctcag tttcttagaa      3780
     acgaaaatcg tttaaaaaga gactttccat taaaagagca atatgacagc gtgatccagg      3840
     agtacctgga tctggggcat atgaaagaag ttccgccgac tcacaattct ccctcgtatc      3900
     atcttcctca tcacgcggta gttaagcccg aaagcaccac tacaaagctt cgcgttgtat      3960
     tcaacgcttc aagtccgtcg gcaaatggga tcagcttaaa tgatattctt catgctggtc      4020
     cagtcctaca atccgatcta acgatccagg tcctgaaatg gcgttatttt caatacgtct      4080
     tcagtgcaga cattacgaaa atgtatcgtc agatctgggt cgatccaaaa cacaccccgt      4140
     ttcaaagaat tctgttccga aacaaggaag gagatatccg agacttcgaa ttaaaaacag      4200
     ttaccttcgg ggtcaactgc gcccccttcc tcgccattcg agtcttgcaa cagctggcag      4260
     aggatatcca agtgccattt ccaaatgcca gccgcatcat ccagcagcac atgtacgtcg      4320
     acgacgttct ggcaggggcg aattccgtaa acgaagccca aagttcaatt cgagagttgc      4380
     aagcagccct aagtgcctcc gggtttccgc taagaaagtg gacctcaaac aacaaaagcg      4440
     tccttaaaga cgtcccggcc gaacacctcc ttcatagcga gttcctcgac atcgatgccg      4500
     aaagcacggc caagacgctc ggtatacggt ggagggcaaa gtccgacgaa ttctatttcg      4560
     ttcctccaga catagttgtg gaggcctcct atacaaagcg agaagttttg tcccaaatcg      4620
     ctaggttgtt cgatcctgcc gggtggctcg cgccgttcat aatccggtca aaaatattca      4680
     tgcaggagat ttggttgcaa aacttaggct gggacgataa gcttcccact gaaatgagtc      4740
     agcggtggca atcgttttta gaggagtatt ccgacctcaa ccagatccgg gttccgagat      4800
     ggatctggta ccagcctgag gtagtcatag agcaccacgg tttctgtgac gcgtctcaga      4860
     gagcctatgg agcggctata tacatccgcg tcgagatggg gcaaaagatc ctgactcgcc      4920
     tgcttacagc caaaacacga gtagccccag tcaaaaccgt ctcccttcct cggctagagc      4980
     tctgtggtgc cgtgctgtta accgaaatgg tgacagcaat ccttccgcac atgccctccg      5040
     ccagttcaga tatccgctgc tggacagatt ccacaatcgt cttagcctgg ctacgaaagc      5100
     ctgcgtgcaa ctggaccaca tttgtggcca acagagttgc caagatcacg caggcgacgc      5160
     cagtcgactg ttgggcgcac gttcgctcag aacaaaactc cgccgatcta gccagtcgag      5220
     gcgtatccct tcaggaattg gcagaaaacc atctctggtg gcatggacca gagtggctgc      5280
     aagggccacg agagctatgg ccagcacaaa gcgacactct tccagtgaca gagctagagc      5340
     agcgcgcggt caaagtgcat tttgtcaagg gcccgtccat cgactttctc gaacgtttct      5400
     ccaaattgga caaggccctg cgagttctgg tctatgttca acgcttcttt aaacgctgcc      5460
     gcaaaggttc gttcttgccc agttcacgac ctacgagtga agagatccga gaggcagaac      5520
     gaactctgac ctccattgcg cagcgcagag catatggcca agagcttcag catttgaccg      5580
     agaaaaggcc tcttccagtg tcaagtcctt tggtgacttt gttcccgttc attgaccaac      5640
     acggcctttt aagagcgtgc ggccgtctca ctgcatccaa aaccctgcaa tatgatgaac      5700
     gtcatccgat tcttctcccc tatgactgta gactgtcgcg cctcatcgtc caatttactc      5760
     accagattac tcttcatggc ggtagtcaat tgatcgtacg cctgatccga accaagtatt      5820
     ggattcctaa aatcaagaat ctggtgaagg ctgtggtcaa tccgtgtaag atttgcacga      5880
     tttacaagaa gagactccaa acacagttga tgggcgactt cccgacagat agagtctcct      5940
     tctcgagggc gttcacctac acgggtatcg actatgccgg ccctttcgaa ataaaaaatt      6000
     atacagggag agcgtgtctc ataacgaagg gatatgtctg tgtgtttgtg tgcttttcca      6060
     cgaaggctat ccatttggaa cccacttccg atctaacaac cgagaaattt ctagcggcct      6120
     ttgctcgttt cgtagcgagg cgcggttgtc ctcagcgggt ccattcggat aatggtaaaa      6180
     cctttgtggg ggcggcagct ttgatttcca gggactttct ccaagccatc aaagagtccg      6240
     tgactgatgc atatagccac cagggactcg tatggcggtt catcccacca ggggctccac      6300
     atatgggggg tttgtgggaa gcaggggtga aaagcttcaa aaccctgttc cttaaatcga      6360
     cgtcagtccg caaatataca tttgaggagc tggcgacgct tctcgctaag attgaggctt      6420
     gcctcaactc tagacccctc tcccctatgt ccgaagatcc ctcagatttg ctggccctca      6480
     caccaggcca tttccttatt ggagggccgt tgctttccac ggcggaaccc gagataaagg      6540
     gcgaagccaa gtcgataata aatcgatggc aacacctcaa ggcacaacat cagcagttta      6600
     gtgcacggtg gaaagaggag tatcttaagg aactccataa acgaagcaaa tggcaatttc      6660
     cgaccaggaa tctccaagcc gacgatatgg tagttgtcaa agaggacaat ctaccaccga      6720
     acgaatggcg gctcggcaga atcgtttctg ccttcccagg agccgacgag cgcattcgag      6780
     tcgtcgagat ccgtacgtct cgcggcacca taaaacgccc tgtccacaaa gttattctgc      6840
     taccgatgga ggacaaagag tcctccgttc ctagggatta gggcacttcc cccattccgg      6900
     ggccaaaata gtagtcggct catactaagc ttcttcattt cttttattgg cagacttact      6960
     cactcctcca ataatggctc ctcgtcctcg tgccacccag tcgttggaga gcagacgtac      7020
     tcgaggtatt aaatcctacc gctgccgagt ctgctctgga atccatcctc ttcgaaagtg      7080
     cacgaggttc cacaaactga gcgttgaaaa gcgccttcgg gcagtactta ttaataagta      7140
     ctgctcgaac tgcctcgccc atcagcactc aggaggagac tgtcgcagcc aagagggatg      7200
     caagaagtgt ggaggagacc accacaccct actccacatg cacgaggtcc tccccgctcc      7260
     gaacccggca gcgctaccag ctccgacgcg cagagagcgc catcccgctg cacctcgtcc      7320
     ggtccggatt tcccgcactc cgccaccagc cccagtcgcc aacaatcgcc cgcgtcagca      7380
     gcagcagaag gctgtcccca tactgcctac agccatcgtc gtgctggaca cgggctcgaa      7440
     gaccttcgag accggggcca tgatcgaccc atgcatgccg gtgagcagca tcgaccggtc      7500
     gttagcggct gcgttccggc tgcccatcac tcggctggga ggcaacgaga tctgctcggt      7560
     gacactccgg tcccgaacca gcaccttccg actcaacgtc gtcctgaaga tcgatcccat      7620
     cctaaggatc cggacaccca tccgagctct gagcgacgcc gccagggcca agtttgacgg      7680
     tgttcgtctc gcggacgagc gcttccaccg gccggcctcc atctccctcg tgttgggatc      7740
     agatgtatat gccaatttga tccaaccggg gttcctaaaa attgaggatg ggttgcccgt      7800
     cgcgcagaac acggtgttcg gatggaccgt ttctggaacg tgcgcgaaat gaagaggacg      7860
     atcctgatat ctagccggcc agggatacct ttgcctacgc aagggggggg agaa            7914
//
ID   MAX_LTR     repbase;    DNA;    INV; 321 BP.
XX
AC   AJ487856;
XX
DT   14-NOV-2002 (Rel. 7.10, Created)
DT   14-NOV-2002 (Rel. 7.10, Last updated, Version 1)
XX
DE   MAX_LTR is a long terminal repeat from the MAX endogenous
DE   retrovirus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; BCDRP superfamily;
KW   BEL-PAO superfamily; MAX; MAX_I; MAX_LTR; endogenous retrovirus;
KW   polyprotein.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-321
RA   Marsano M.R. and Caizzi R.;
RT   "Max: a new retrotransposon of Drosophila melanogaster which
RT   interrupts the Bari-1 repeats in the heterochromatic h39
RT   region.";
RL   Unpublished.
XX
RN   [2]
RP   1-321
RA   Marsano M.R. and Caizzi R.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (20-MAY-2002)Marsano R.,
RL   DAPEG-Section of Genetics University of Bari, Via Amendola,
RL   165/A, 70126, ITALY.
XX
DR   Genbank; AJ487856; Positions      73     393.
XX
SQ   Sequence 321 BP; 69 A; 100 C; 73 G; 79 T; 0 other;
     tgttcacgcc agaagggcgc aaacagttga gcggcagtgt aagcggccaa tgcttgtact        60
     cgaagctcct ccacggctcg caagcaccgc tgctcgcgct ctccttctct tctctcgctc       120
     tcctcccttc ccgcagggta ttcaccactc cgcggtcccg cggtatttct actgttagtg       180
     ttaaggtggt tgtaatttac cagtgcgtga ataaagaacg aaaggttgaa gtccaccccg       240
     cgcgttttta atttcgggga aaatttcagc agccgccgca gcaaccacaa ccaaaggaat       300
     ctttccgccc actccatttc a                                                 321
//
ID   MBSAT1_MB   repbase;    DNA;    INV; 234 BP.
XX
AC   AY136944;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Mamestra brassicae satellite MBSAT1 sequence.
XX
KW   SAT; Satellite; Simple Repeat; MBSAT1_MB; satellite repeat.
XX
OS   Mamestra brassicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mamestra.
XX
RN   [1]
RA   Mandrioli M. and Manicardi C.G.;
RT   "Cytogenetic and molecular characterization of the MBSAT1
RT   satellite DNA in the holocentric chromosomes of the cabbage moth
RT   Mamestra brassicae.";
RL   Unpublished.
XX
DR   Genbank; AY136944; Positions       1     234.
XX
SQ   Sequence 234 BP; 83 A; 38 C; 51 G; 62 T; 0 other;
     aaataaaatt tcaagcgcta gctagctcga taggtagatt ttgaatagct cgatcgtaag        60
     ctaggggaaa attcgatagg ctagttagac agatccttag agatcgccgc atataaccca       120
     atgcagaatt gggacaaaaa ttggaaattt ttaagggaaa ttttcctttt agacagacac       180
     agacatgctc gatcgtatcg cgagatcgta gatagatagc tcgaaaaaat attt             234
//
ID   mdg1_DSe_A-I repbase;    DNA;    INV; 6194 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; mdg1_DSe_A-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6194
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1161..1511,1515..2399)
FT                 /product="mdg1_DSe_A-I_1p"
FT                 /translation="MTPNREVQQYTLNKHAQILVRCFNEARQLIYRERKRL
FT                 TKNHLSQAVKFLNSFRENLLNVKYRHNLNITIPTILSTPIVAEIGEDIESV
FT                 GESEIEIKEEDLHDLAIPAVITLPELLEELSDSNTSRIQETAKMTDSAATS
FT                 REYVRQISSTIPEFDGKKLNLNIFLTALRLIDLTKGDQEMLAIEVIKTKIL
FT                 GPLSYKVENEKTIIGIINVLKASVKGESPDVIKAKMLSTQQRGKTAAQYTT
FT                 EIENLRGLLEAAYIDDGLDSNNADKFATKEAISAMTKNCGHEKLKTILEAG
FT                 YFNTMNSVIEKYIHCSTEMTGNSNSVLFYNNRGHYRGNNYRGNYQNRGNGR
FT                 GNYNSYNNNYRGRGGYHSGNRGRGGNQNYNRGGGYSRGNQNHNYKTSHTHN
FT                 VRNIQSENEHAPLSDNLQ"
FT   CDS           join(2453..3610,3614..5617)
FT                 /product="mdg1_DSe_A-I_2p"
FT                 /translation="MSTNSWVTLLIDTGAEISLLKSRNNNLNDLNPKNTTN
FT                 ISGIGQGTIQSLGTLHLEMCIANAAIPYEFHIVPDNFPIPGDGIIGLDFIK
FT                 KYNCILEFHDQEDWFTLRPKNFRNIKIPIIHSLDNEIILPARSEVIRKIQL
FT                 TSTDTHVLIPNQELQPGIIIASALVNTQNVLIRIINTTEKDAIVSSANIKS
FT                 ESLDDYDVYNANIENSAQRTSEVLKLLKFPSLFKSGLTKLCTEYSDIFGLE
FT                 TETISANNFYKQKLRLNDKTPVYIKNYRMPESQKPEIQRQVDKLIKDGIVE
FT                 PSISEYNSPLLLVPKKSLPNSAEKRWRLVVDYRQINKKLLADKFPLPRIED
FT                 ILDQLGRAKYFSCLDLMSGFHQIELDERSRNITSFSTSTGAYRTRLPFGLK
FT                 IAPNSFQRMMTLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNLTDVFKLCR
FT                 QHNLKLHPEKCTFFMKEVTYLGHKCTDKGILPDDSKYEVIKNYPKPVNADE
FT                 ARRFVAFCNYYRRFIKNFSEKSRHLTRLCKKNVPFEWTSECHEAFEYLKRE
FT                 LMKPTLLQYPDFSKQFCITTDASKQACGAVLSQDHNGQQLPVAYASRSFTK
FT                 GESNKSTTEQELAAIHWAINHFRPYVYGRHFLVQSDHRPLSYLFSMRNPSS
FT                 KLTRMRLDLEEFEFTVEYLKGKDNHVADALSRITIGELKAMNRQILKVTTR
FT                 STTRQKNTCAGEKLHEPNKKENIKMPNIYQVINNIDAKKYVILKIDKHKCL
FT                 LKRGKQIITRFDLTNFYSNEIIDLDQFFQRLNEEARINSIIQTQLSPREQI
FT                 FEVVTIKNFKEKGNKILKNLKIALLSKVTKIDKNDKVQIKAILSKYHDDPS
FT                 EGGHSGISRTLRKIKNYYYWPQMTKAISKYVKTCLKCQQAKTTKHTKTPLT
FT                 ITETPATAFDIVLIDTIGPLPRSENGNEYAVTIICDLTKYLVTVPIPNKSA
FT                 RSVAKAIFENFILKYGPMKTIITDMGTEYKNQIIDDLCKYMKIKNITSTAH
FT                 HHQTLGTIERSHRTFNEYVRSYIPYLLTKPIGIYGYNILLIVSTQHHR"
XX
SQ   Sequence 6194 BP; 2487 A; 1067 C; 1057 G; 1583 T; 0 other;
     tggcgaccgt gacagtcgtc caacgctgga cgaatagact gaagtaaaag taacaaaaaa        60
     ataaaaaaca agctggaact ggaacttgga ttggattatc gggcagtcgt gcggacatcg       120
     ctttagtcga gaactaagat caaaaggaaa actggaatgg aattgccaag gaaaaatctg       180
     agcatgtcca gcaccggcac caccactaac taaaccaaag aagtcctgcc cccctggctg       240
     cgaaggaatc tggagtccct actgcctggg gacttgtgag cggccatcga cgtcttcagc       300
     ggcgaagcaa cagacagcag cgagggagtg tcagcgtgcc acccccggcg acgcccagct       360
     gacaccagat gaacatcagc agcagtataa cattaaataa atgaaagagg tataaaatat       420
     atataagaac tcgtaagaaa tattgtaaaa cggagcatat actactatgc cctgttaacc       480
     caatatggcc cgtgaagcca tagctagaat caggcaggca ataatgtaaa atacaatttc       540
     tttctttttt tttaacgaac attgaaaatt tttttgaaaa actcaatcat gaatgaattt       600
     gaaatttgaa tgaatttttg aaaaaaaaat aataagtaaa agtacaaacg tagtattgac       660
     tttatctaga ttagaattca aaaaaaaaat atacaaaaat gggttggttt ggatctgacg       720
     atagtcagac aaaagataat acggccaatg tggtcaataa cttaaaaata gtcgaccata       780
     cagaagacat tcagtcactg tggttactcc ttttgatctt gacgatcgta acagtcgctc       840
     agtttatatt aacgctatat gttaagcata acaagataat aaagaagcgt tatataagca       900
     gagcagataa aatttaaaaa aaaaaaaaaa cacacccaaa atgtattttg aattaagatg       960
     atctaaaatt tttattttta ataccagaaa actagaatga aaaaaaaaaa agattattga      1020
     agaaaccatt ttaggagagg ccacaattta taaagtttga ttgcacagat aaatccatat      1080
     tattctttaa atggactgtc aaggaataaa aaaacgagct taaagaaatt aaaacgactt      1140
     tcgacaagtc ttataaatgc atgacaccaa atagagaagt gcaacaatac actctcaaca      1200
     agcatgcgca gatattggta agatgcttta atgaagcacg ccaattaatt tacagagaaa      1260
     ggaaaagatt aacaaaaaat catttatctc aagcagtaaa atttctaaac agcttccgtg      1320
     agaacttgtt aaacgtcaag tacagacata acttaaatat tacaatccca acgattttaa      1380
     gcacacctat agtggctgag atcggtgagg atatcgaaag tgtaggagaa tcggaaatag      1440
     aaataaaaga agaggatctc cacgatcttg caattccagc ggtaataaca ttacccgaat      1500
     tacttgaaga ataactttca gactcaaata cttcaagaat acaggaaaca gccaaaatga      1560
     cagactctgc cgcaacatca agggaatatg tgcgacaaat ttcgtccaca atacctgagt      1620
     ttgacggcaa aaagttaaac ttaaatatat tcctgacggc cctccggcta atagatctga      1680
     caaaaggaga tcaggagatg ctagcgatag aggtaatcaa gacaaagata cttggtccat      1740
     tatcatacaa agttgaaaat gaaaagacca ttatcggtat aataaatgta ttaaaagcat      1800
     cagttaaagg cgaatcgccc gatgtcatca aagcaaaaat gcttagtaca caacagcgcg      1860
     gcaaaactgc agcgcaatat accacagaga tagaaaacct acgtgggttg ctcgaagcag      1920
     cctatataga tgatggttta gattcaaaca atgcagacaa attcgctaca aaggaagcca      1980
     tatctgcaat gaccaagaat tgtgggcacg agaagctcaa aaccatattg gaagctggat      2040
     atttcaacac aatgaatagc gtgattgaaa aatacataca ctgcagtaca gaaatgaccg      2100
     gcaattcaaa tagtgtatta ttctataata atagaggaca ctatcgaggt aataattacc      2160
     gaggaaatta ccaaaacaga ggtaatggcc gaggaaatta taactcatac aacaacaatt      2220
     atagaggtcg aggtggttac catagtggaa acagaggacg aggtggtaac caaaattata      2280
     atagaggtgg aggttactca agaggtaacc aaaaccataa ctataaaaca agtcataccc      2340
     acaatgtccg aaacatacaa tcggaaaacg aacatgcccc cttgagcgac aatctacagt      2400
     aaaattatac aaaattaatc tcaatttaag catttttata ctattaaaga atatgagtac      2460
     caattcatgg gtaactcttt taatagatac aggtgcagaa atttccctgc ttaaatccag      2520
     aaacaataat cttaacgatt taaatccaaa aaacacaaca aatatatcag gaatagggca      2580
     agggacaatt cagtctctag gtacactaca tttagaaatg tgtattgcta atgcagcaat      2640
     accatatgaa ttccatatcg tacctgacaa ttttcctata ccaggggatg gtataattgg      2700
     cttggatttc attaagaaat acaattgtat tttggaattc cacgaccaag aagattggtt      2760
     cactttgagg cccaaaaatt tcaggaacat aaaaattcct attatacatt cactagataa      2820
     cgaaataatt ttgccagcta gatcagaagt gattcgaaag attcagctaa catctactga      2880
     cacacatgtc ctcatcccca accaggaatt gcaacctggc ataataatag caagtgcact      2940
     cgtaaacact cagaacgtct tgattcgaat tattaataca actgaaaaag acgctatagt      3000
     tagtagcgca aatataaaaa gcgaatcatt ggatgattat gatgtataca atgcaaatat      3060
     agaaaatagt gcacaaagaa cttcagaagt attaaaactt cttaaatttc catcgttatt      3120
     caaaagcggt ttaacaaaat tatgcaccga atatagcgat atttttggtc ttgaaacaga      3180
     aaccatatca gctaataatt tttataagca aaaattgaga ttaaatgaca aaactccagt      3240
     ctatatcaaa aactatagaa tgccagaaag tcaaaagcca gaaattcaaa ggcaagttga      3300
     caaattaata aaagatggca ttgtcgaacc atctatttca gaatataata gcccacttct      3360
     cttggtaccc aagaaatcac tgcctaactc ggcggaaaag agatggcgat tagtagtcga      3420
     ttatcgccaa atcaacaaga aactgctagc agataaattc ccacttccaa gaatagaaga      3480
     tattcttgat caattaggtc gagcaaaata tttctcgtgc ctagacctga tgtcaggatt      3540
     tcatcaaata gaattagacg aaaggtcaag aaatataaca tcattctcaa cttcaacagg      3600
     agcataccgc tagacgcgat taccatttgg tttaaaaata gccccaaatt ctttccaaag      3660
     aatgatgacc cttgcatttt caggcttaac gccttcgcaa gcatttctgt atatggatga      3720
     tttagtagtc ataggctgtt ctgaaaagca catgcttaaa aatctaaccg acgttttcaa      3780
     attatgtagg caacataatt taaaactaca tccagaaaaa tgcactttct ttatgaaaga      3840
     ggttacttat ttaggtcaca agtgtactga caaaggtata ttgccagatg actctaaata      3900
     tgaggtaata aaaaattacc ccaaaccagt aaacgcagac gaagctagac gattcgtggc      3960
     attttgcaat tattacagaa gatttattaa gaacttttct gagaaatcac gccacttaac      4020
     gaggctttgt aaaaagaatg ttccatttga atggacaagc gaatgccatg aggcattcga      4080
     atatcttaaa agggaattaa tgaaaccaac actccttcag tacccagatt tcagcaaaca      4140
     attttgcata accacagatg ctagtaaaca agcatgtgga gcggtactat ctcaagacca      4200
     taacggtcaa cagctaccag tggcatacgc ttcaagaagt tttacaaaag gcgaaagtaa      4260
     taagtccact acagagcagg agctagcagc tattcactgg gcaataaatc acttcagacc      4320
     atacgtatat ggtagacatt tcttagtaca aagtgaccat aggccactat catatctttt      4380
     ttcgatgaga aaccccagtt caaaattaac cagaatgaga ctagacttgg aggagtttga      4440
     attcacagta gaatatctca aggggaaaga taatcatgtt gcagacgcat tgtcccgaat      4500
     aaccatcgga gaacttaaag cgatgaatag acagatacta aaggtcacaa caagatctac      4560
     aacaagacag aaaaatacct gcgcaggtga aaaattgcat gaaccaaata agaaagaaaa      4620
     tataaaaatg cccaatatct atcaggtaat caataacatt gatgccaaaa aatatgttat      4680
     actcaaaata gacaagcata agtgcttgtt gaaaagagga aaacaaatta taacacgttt      4740
     tgatttgact aatttttatt ctaatgaaat aatcgattta gatcaatttt ttcaaaggct      4800
     taatgaagaa gcaagaataa atagcatcat tcaaacacaa ttgtcaccaa gagaacaaat      4860
     cttcgaagtt gtcactataa agaattttaa agaaaagggc aataaaatac taaaaaactt      4920
     aaaaatagcg ctattaagca aggtgactaa gatagataaa aatgataagg ttcaaataaa      4980
     agcaatactg tctaaatatc atgatgatcc atcagaagga ggccattcag gaatttctag      5040
     aaccctgagg aaaataaaaa actattatta ttggccccaa atgacaaagg caataagtaa      5100
     atatgttaaa acatgtttaa aatgtcaaca agccaagaca acaaaacata ctaaaacacc      5160
     tttgacgata acagaaacgc cagcaacagc atttgatata gttttgatag ataccattgg      5220
     tccactgcca agatcagaaa acggaaatga gtatgctgtt actatcattt gcgatttaac      5280
     aaaatatttg gtaacggtac ctattccaaa taaaagtgca agatcagttg ctaaggctat      5340
     attcgaaaat tttattctaa agtacggtcc aatgaaaaca atcataacgg acatgggaac      5400
     ggaatataaa aaccaaatta tagacgacct gtgcaaatat atgaagataa aaaacattac      5460
     ttcaacagca caccatcacc agacattagg aacaatagaa cgaagtcaca gaactttcaa      5520
     cgagtatgtt cgctcatata taccatatct gttgacaaaa ccgattggga tatatggata      5580
     caatatttta cttattgttt caacacaaca ccatcggtag ttcatgaata ttgtccatat      5640
     gaattagtat ttggaagatt accaagacgg ttcatagatt ttaacaggat agacagaata      5700
     gatcctattt acaacatgga tgactattca aaagaagtta agctaagatt agaaatagca      5760
     tatagaagag ctaaaaatat gttagacaag gctatgatag aaatattagt aactttgaat      5820
     taaaaatagg agataagata ttacttaaaa acgaaacggg tcataaactt gacaataatt      5880
     atttatgacc atatttagtt tcagaaatag gagataatga caacattaca attataggaa      5940
     ataaaaataa aaaacagata gtccataaag actatcataa tacattttgt ttggttggcc      6000
     aaccacaaat aaaaaaccaa taaaaacatt ataatacaaa acttttactt tgcaaaatac      6060
     aatgaaaata tatatatata tttttaatat ctctttaatc attcatttca aatattaata      6120
     tacatattaa aaaaaaaaat tatatacttg aaaataactt catattatta cgttattttt      6180
     caaaaggagg gaga                                                        6194
//
ID   mdg1_DSe_A-LTR repbase;    DNA;    INV; 506 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; mdg1_DSe_A-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-506
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 506 BP; 170 A; 110 C; 97 G; 129 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacatatgg        60
     cagcactttg gtgctatgtt tatgtttatg tctatgcacg cagttcgacc caaggcggat       120
     gtaacatgat cgcccactcg aaggccacga agtataagtg cagtgcccac ttgaagggca       180
     aaaagtataa gtgcatggtc agcattcaca cggcgaccaa atgcatatta catacgtaca       240
     tacatagctc gctctcccga taagcctaga tatataagat atacataaag aacgccgctc       300
     cgcccggcag cgcagctacg cggattagcc taagtccaaa tatattcaaa actgtaaaat       360
     cagacactct gtagacgttg agctggcaga accatttctg cctactctaa aaccaaaaga       420
     ataaattgaa taaatataaa gtcagcccga cggctgtatt caactttaaa acggacttgt       480
     gttcttaatt ggagttcatc attaca                                            506
//
ID   mdg1_DSe_B-I repbase;    DNA;    INV; 5466 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; mdg1_DSe_B-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5466
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   3'-end is truncated.
XX
SQ   Sequence 5466 BP; 2182 A; 1002 C; 953 G; 1329 T; 0 other;
     tggcgaccgt gacaaaggat cgttataagt ggtagcagaa gctaaaggaa accgcttgtg        60
     ataattttca acttccatca acaagcactg aacgtgagag gatcagcatg cccggaattc       120
     gatgcttatc caccaagacg gcggcaattg tgaagaaaaa aaaaagcgat ctgagtgagt       180
     agagcgttag tgtgatggga aaaacacagg ggcggagttc gaaataatgt aaaaaagaga       240
     atagcgcaca taaagtggct attatatacg aacactccac caccccaatg gtcgaaagct       300
     caaaaactac aagctgagct agaccactgt gtcgaatatc ttaagaaaaa aatccccacc       360
     acacccgctc actcagaaaa acaaataaaa tcgttaataa ttaacaaaac tccaactccc       420
     aatccgaaaa gcctgtctgt ttttaagaaa agctgcccga acgactgcga gggaccactg       480
     ttcacaccac attgtgaaca tacgtgcaga cattgcagcc ccagcacata acccctaaat       540
     gaggaaatca tcatcaacgt ggtgagcagc ccgctcacta cgtcatcgaa ggagtgtcag       600
     cgtgccaacc ccggcgacgt ccagctgatg caaggagggt cagagcgaag caagtaggag       660
     ctgaaaaata aaatattttt ttttgttgcc ctgcgtggca caccaccctc gatgcactgc       720
     gctgcatatt aatattacac aaaatattgt aacattgagc ggaacttttt ctgcccgatg       780
     agaagaatgg cccgtaaagc catacaccaa ttaggtagaa aaatgtaact atattgaaaa       840
     aaaaaaaaat caaaacaaca tatttttaaa gtaaaataaa ccaaaaccca aaaataaaaa       900
     aaaaaaaaaa aaaaaaatat acaaaaatgg gttggtttgg atctgacgat agtcagacaa       960
     aagataatac ggccaatgtg gtcaataact taaaaatagt cgaccataca gaagacattc      1020
     agtcactgtg gttactcctt ttgatcatga cgatcgtaac agtcgctcag tttatattaa      1080
     cgctatatgt taagcataac aaaataataa agaagcgtta tataggcaaa acagagaata      1140
     gtttggacaa aatttaaaaa aaaaaaaaaa aaaaacacac ccaaaatgta ttttgaatta      1200
     agatgatcta aaatttttat ttttaatatc agaaaactag aatgaaaaaa aaaaaaaaaa      1260
     gattattgaa gaaacctttt taggagaagc cacaatttat aaagttcgat tgcacaaata      1320
     aatctatatt attccttaaa tggactggca agaaataaaa aacgagctca aagaaattaa      1380
     aacaactttt gacaagtctt ataaatgcat gacaccaaat cgagaagtgc aacaagacac      1440
     tctcaacaag catgcgcaga tattggtaag atgctttaat gaagcacgcc aattaattta      1500
     cagagaaagg aaaagattaa caaaaaatca tttatcccaa gcagtaaaat ttctaaacag      1560
     gttccgtgag aacttgttaa acgtcaagta cagacataac ttaaatatta caatcccaac      1620
     tattttaagc acacctatag tggctgagat cggtgaggat atcgaaagtg taggagaatc      1680
     agaaatagaa ataaaagaag aggatctcca cgatcttgca attccagcgg taataacatt      1740
     tcccgaatta attgaagaag atctttcaga ttcaaatact tcaagaatac aggaaacaga      1800
     caaaatgaca gactctgccg caacatcaag ggaatatgtg cgacaaattt cgtccacaat      1860
     acctgagttc gacggcaaaa agctaaactt aaatagattc ctcacggccc tccggctaac      1920
     agatctgaca aaaggaaatc aggagatgct agcggtagag gtaatcaaga caaagatact      1980
     tggtccatta tcacacaaag ttgaaaatga aaagaccatt atcggtataa taaatctatt      2040
     aaaagcatca gttaaaggcg aatcgcccga tgtcatcaaa gcaaaaatgc ttagtacaca      2100
     acagcgcggc aaaactgcag cgcaatatac cacagagatg gaaaacctac gtgggttgct      2160
     cgaagcagcc tatatagatg atggtttaga ttcaaacaat gcagacaaat tcgctacaaa      2220
     ggaagccatt tctgcaatga ccaagaattg tgggcacgat aagctcaaaa ccatattgga      2280
     agctggaaat ttcaacacga tgaatagcgt gattgaaaaa tacatacact gcagtacaga      2340
     aatgaccggc aattcaaata gtgtattatt ctataataat agaggacact atcgaggtaa      2400
     taattaccga ggaaattacc aaaacagagg taataaccga ggaaattata actcctacaa      2460
     taacaattat agaggccgag gtggttacca tagtggaaac agaggacgag gtggtaacca      2520
     aatttataat agaggtggag gttactcaag aggtaaccaa aaccataact ataaaacaag      2580
     tcatacccac aatgtccgaa acatacaatc ggaaaacgaa catgccccct tgagcgacaa      2640
     tctacagtaa aattatacaa aattaatctc aatttaagca tttttatacg attgaagaat      2700
     atgagtacca gttcatgggt aactctttta atagatacag gtgcagaaat ttccctgctt      2760
     aaatgcagaa acaataatct taacgattta aatccaaaaa acacaacaaa tatatcagga      2820
     atagggcaag ggacaattca gtctctaggt acactacatt tagaaatgtg tattgctaat      2880
     gcagcaatac catatgaatt ccatatcgta cctgacaatt ttcctatacc aggggatggt      2940
     ataattggct tggatttcat taagaaatac aattgtattt tggaattcca cgaccaagaa      3000
     gattggttta ctttgaggcc caaaaatttc aggaacataa acattcctat tatacattca      3060
     ctagataacg aaataatttt gccagctaga tcagaagtga ttcgaaagat tcagctaaca      3120
     tctactgaca cacatgtcct catccccaac caggaattac aacctggcat aataatcgca      3180
     agtgcactcg taaacactca gaacgtcttg attcgaatta ttaatacaac tgaaaaagac      3240
     gctatagtta gtagcgcaaa tataaaaagc gaatcattgg atgattatga tgtatacaac      3300
     gcaaatatag aaaatagtgt gcaaagaact tcagaagtat taaaacttct taaatttcca      3360
     tcgttattta aaagcgattt aacaaaatta tgcaccgaat atagcgatat ttttggtctt      3420
     gaaacagaaa ccatatcagc taataatttt tacaagcaaa aattgagatt aaatgacaaa      3480
     actccagtct atatcaaaaa ctatagaatg ccagaaagtc aaaaaccaga aattcaaagg      3540
     caagttgaca aattaataaa agatggcatt gtcgaaccat ctatttcaga atataatagc      3600
     cctcttctct tggtacccaa gaaatcactg cctaactcgg cggaaaagag atggcgatta      3660
     gtagtcgatt atcgccaaat caacaagaaa ctgatagcag ataaattccc acttccaaga      3720
     atagaagata ttcttgatca attaggtcga gcaaaatatt tctcgtgcct agacctgatg      3780
     tcaggatttc atcaaataga attagacgaa aggtcacgaa atataacatc attctcaact      3840
     tcaacgggag cataccgcta cacgcgatta ccatttggtt taaaaatagc cccaaattct      3900
     ttccaaagaa tgatgaccct tgcattttca ggcttaacgc cttcgcaagc atttctgtat      3960
     atggatgatt tagtagtcat aggctgttct gaaaagcaca tgcttaaaaa tctaaccgac      4020
     gttttcaaat tatgtaggca acataattta aaattacatc cagaaaaatg cactttcttt      4080
     atgaaagagg ttacttattt aggtcacaag tgtactgaca aaggtatatt gccagatgac      4140
     tctaaatatg aggtaataaa gaattacccc aaaccagtaa acgcagacga agctagacgc      4200
     ttcgtggcat tttgcaatta ttacagaaga tttattaaga acttttctga gaaatcacgc      4260
     cacttaacga ggctttgtaa aaagaatgtt ccatttgaat ggacaagcga atgcaatgag      4320
     gcattcgaat atctcaaaag ggaattaatg aagccaacac tccttcagta tccagatttc      4380
     agcaaacaat tttgcataac cacagatgct agtaaacaag catgtggagc ggtactatct      4440
     caagaccata acggtcaaca gctaccagtg gcatacgctt caagaagctt tacaaaaggc      4500
     gaaagtaata agtccactac agaacaggag ctagcagcta ttcactgggc aataaatcac      4560
     ttcagaccat acgtatatgg tagacatttc ttagtacaaa gtgaccatag gccactatca      4620
     tatctttttt caatgagaaa ccccagttca aaactaacca gaatgagact agacttggag      4680
     gagtttgaat tcacagtaga atatctcaag gggaaagata atcatgttgc agacgcattg      4740
     tcccgaataa ctatcggaga acttaaagca ataaatagac agatactaaa ggtaacaaca      4800
     agatcaacaa caagacagaa aaatacctgc gcaggtgaaa aattgcatga accaaatgag      4860
     aaagaaaata taaaaatgcc caatatctat caggtaatca ataacattga tgccaaaaaa      4920
     tatgttatac tcaaaataga caagcataag tgtttgttga aaagaggaaa acacattata      4980
     acacgttttg atatgactaa tttttattct aatgaaataa tcgatttaga tcaattcttt      5040
     caaaggctta atgaagaagc aagaataaat agcatcattc aaacacaatt gtcaccaagt      5100
     gaacaaatct tcgaatttgt cactataaag aattttaaag aaaagggcaa taaaatacta      5160
     aaaaacttaa aaatagcgct attaaacaag gtgactaaga tagataaaaa tgataaggtt      5220
     caaataaaag caatactgtc taaatatcat gatgatccat cagaaggagg ccattcagga      5280
     atttctagaa ccctgaggaa aataaaaaat tattattatt ggccacaaat gacaaaggca      5340
     ataagtaaat atgttaaaac atgtttaaaa tgtcaacaag ccaagactac aaaacatact      5400
     aaaacacctt tgacgataca gaaacgccag caacagcatt tgatatagtt ttgatagata      5460
     ccagaa                                                                 5466
//
ID   mdg1_DSe_B-LTR repbase;    DNA;    INV; 442 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; mdg1_DSe_B-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-442
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 442 BP; 173 A; 77 C; 64 G; 128 T; 0 other;
     tgtagtatat aagaacataa taataataat aataataata atgataataa tattaataat        60
     aattataata tgaatcataa taataagtca actaataagt aaacttagga ccaccctaat       120
     tccttaggac caccctagta gatccttaag tacaccctaa tcctaaatat gcgaattcag       180
     catgtacgcc tttaggggtc gcactcgact cccattggtt atcgagtatg aacttcatac       240
     atacatattg cagaatttgc tagtgtcagc acttggctgt cacaagagat ctgcctgtag       300
     accacactaa gatcagttat aaatcaggaa tagatcagga atgtacactt gctgaataaa       360
     aaccaaataa agataaaatg accgattgcg ttttgaaact taattaacta catcagaagt       420
     attggaattc taattaacta ca                                                442
//
ID   MDG1_I      repbase;    DNA;    INV; 6596 BP.
XX
AC   .
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Internal portion of MDG1 LTR-retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   LTR-retrotransposon; internal portion; MDG1_LTR; MDG1_I.
XX
NM   MDG1_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6596
RA   Ilyin V.Y.;
RT   "MDG1_I.";
RL   Direct Submission to Genbank (17-MAY-1991)Y.V. Ilyin, Inst of Mol
RL   Biol USSR Acad of Sciences, Department of Genome Mobility,
RL   Vavilov str. 32, Moscow 117984, USSR.
XX
RN   [2]
RP   1-6596
RA   Avedisov N.S., Cherkasova A.V. and Il'in V.I.;
RT   "[Features of the structural organization of the MDG1
RT   retrotransposon of Drosophila, revealed during its sequencing].";
RL   Genetika 26(11), 1905-1914 (1990).
XX
RN   [3]
RP   1-6596
RA   Cherkassova A.V., Surkov N.S. and Ilyin V.Y.;
RT   "Leader region of mdg1 Drosophila retrotransposon RNA contains
RT   3'-end processing sites.";
RL   Nucleic Acids Res 19(12), 3213-3219 (1991).
XX
DR   [3] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1307..2617
FT                 /product="MDG1_I_1p"
FT                 /translation="MDWQEIQNELKEIKTTFDKSYKCMTPNREVQQDTLNK
FT                 HAQILVRCFNGARQLIYRERKRLTKNHLSQAVKFLNRFRENLLNVKYRHNL
FT                 NITIPTILSTPIVAEIGEDIESVGESEIEIKEEDLHDLAIPAVITLPELLE
FT                 EELSDSNTGIRIQETDKMTDSAATAREYVRQISSTIPEFDGKKLNLNRFLT
FT                 ALRLIDLTKGDQEMLAVEVIKTKILGPLSHKVENEKTIIGIINLLKASVKG
FT                 ESPDVIKAKMLSTQQRGKTAAQYTTEIENLRGLLEAAYIDDGLDSNNADKF
FT                 ATKEAISAMTKNCGHDKLKTILEAGNFNTMNSVIEKYIHCSTEMTGNSNSV
FT                 LFYNNRGHYRGNNYRGNYQNRGNGRGNYNSYNNNYRGRGGYHGGNRGRGGN
FT                 QNYNRGGGYSRGNQNHNYKTSHAHNVRNIQSENEHTPLSDNLQ"
FT   CDS           2545..6228
FT                 /product="MDG1_I_2p"
FT                 /translation="NKSCPQCPKHTIGKRTYPLERQSTIKLYKINLNLSIF
FT                 IRLKNMSTNSWVTLLIDTGAEISLLKCRNNNLNDLNPKNTTNISGIGQGTI
FT                 QSLGTLHLEMCIANAAIPYEFHIVPNNFPIPGDGIIGLDFIKKYNCILEFH
FT                 DQEDWFTLRPKNFRNINIPIIHTLDNEIILPARSEVIRKIQLTSTDTHVLI
FT                 PNQELQPSIIIASALVNTQNVLIRIINTTEKDAIVSSANIKSESLDDYDVY
FT                 NANIENSAQRTSEVLKLLKFPSLFKSDLTKLCTEYSDIFGLETETISANNF
FT                 YKQKLRLNDKTPVYIKNYRMPESQKPEIQRQVDKLIKDGIVEQSISEYNSP
FT                 LLLVPKKSLPNSEEKRWRLVVDYRQINKKLLADKFPLPRIEDILDQLGRAK
FT                 YFSCLDLMSGFHQIELDERSRNITSFSTSTGAYRYTRLPFGLKIAPNSFQR
FT                 MMTLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNLTDVFKLCRQHNLKLHP
FT                 EKCTFFMKEVTYLGHKCTDKGILPDDSKYEVIKNYPKPVNADEARRFVAFC
FT                 NYYRRFIKNFSEKSRHLTRLCKKNVPFEWTSECNDVFEYLKRKLMKPTLLQ
FT                 YPDFSKQFCITTDASKQACGAVLSQDHNGQQLPVAYASRSFTKGESNKSTT
FT                 EQELAAIHWAINHFRPYVYGRHFLVQSDHRPLSYLFSMRNPSSKLTRMRLD
FT                 LEEFEFTVEYLKGKDNHVADALFRITIGELKAINRQILKVTTRSTTRQKNT
FT                 CAGEKLHEPNEKENIKMPNIYQVINNIDAKKYVILKIDKHKCLLKRGKQII
FT                 TRFDMTNFYSNEIIDLDQFFQRLNEEARINSIIQTQLSPSEQIFEFVTIKN
FT                 FKEKGNKILKNLKIALLNKVTKIDKNDKVQIKAILSKYHDDPSEGGHSGIS
FT                 RTLRKMKNCCCWPRMTKAISEYVETCLKCQQAKTTKHTKTPLTITETPATA
FT                 FDKVLIDTIGPLPRSENGNEYAVTIICDLTKYLVTVPIPNKSAKSVAKAIF
FT                 ENFILKYGPMKTITTDMGTEYKNQIIDDLCKYMKIKNITSTAHHHQTLGTV
FT                 ERSHRTFNEYVRSYISVDKTDWDIWIQYFTYCFNTTPSVVHEYCPYELVFG
FT                 RLPRQFIDFNRIDRIDPIYNMDDYSKEVKLRLEIAYRRAKNMLDKAKADRK
FT                 IKYDRNISNFELKIGDKILLKNETGHKLDNNYLGPYLVSEIGDNDNITIIG
FT                 NKNKKQIVHKDRLKIFNS"
XX
SQ   Sequence 6596 BP; 2721 A; 1144 C; 1109 G; 1622 T; 0 other;
     tggcgaccgt gacaaaggat cgttataagt tgtagcagaa gctaaaggaa accgcttgtg        60
     ataattttca acttcgatgc tcatccacca agacggcggc aattatgaag aaaaaagcga       120
     tctgagtgag tagagtgtca gtgtgatggg aaaaaacagg ggcggagttc gacataatat       180
     aaaaaagaga atagcgcaca taaagtggct attatatacg aacactccac caccccaatg       240
     gtcgaaagct caaaaactac aagctgagct agaccactgt gtcgaatatc tcaagaaaaa       300
     aatccccacc acacgcgctc actcagaaaa tcaaataaaa tcgttaacaa ttaacaaaac       360
     tccaactccc aatccgaaaa gcctgcctgt tttcaagaaa agatgcccga acgactgcga       420
     gggaccactg ttcacaccgc attgtgaaca tacgtgcaga cattgcagct ccaccacata       480
     acccctaaat gaggaaatca tcatcaacgt ggtgagcagc ccgctcatta cgtcatcgag       540
     ggagtgtcag cgtgccaacc cggcgacgac cagatgacgc aggagggtca gagtgaagca       600
     aataggagct gaaaaataaa atattttttt tgttgccctg cgtggcacac cctcgatgca       660
     ctgcgctgca tattaatatt acacaaaata ttgtaacatt gagcggaact ttttctgccc       720
     gatgagaaga atggcccgta aagccataca ccaactaggt aggaaaatgt aactatattg       780
     aacaaaaaaa aaaaaaatca aaacaacata tttttaaagt aaaataaacc aaaacccaaa       840
     aataaaaaaa aaaaaaaaaa aaaaaaaaat aaaaatatac aaaaatgggt tggtttggat       900
     ctgacgatag tcagacaaaa gataatacgg ccaatgtggt caataactta aaaatagtcg       960
     accatacaga tgacattcag tcactgtggt tactcctttt gatcatgacg atcgtaacag      1020
     tcgctcagtt tatattaacg ctatatgtta agcataacaa gataataaag aggcgttata      1080
     taggcaaagc agagaatagt ttggataaaa tttgaaaaaa aaaaaaaaaa aaaaaaaaaa      1140
     aaaaacatcc gagatgtatt ttgaattaag atgatctaaa atttttattt ttaatatcag      1200
     aaaactagaa tgaaaaaaaa aaaaaaagat tattgaagaa acctatttga gagaggccaa      1260
     aatttataaa gttcgattgc atagataaat ccatagtatt ctttaaatgg actggcaaga      1320
     aatacaaaac gagcttaaag aaattaaaac aacttttgac aagtcttata aatgcatgac      1380
     accaaataga gaagtgcaac aagacactct caacaagcat gcgcagatat tggtaagatg      1440
     ctttaatgga gcacgccaat taatttacag agaaaggaaa agattaacaa aaaatcattt      1500
     atcacaagca gtaaaatttc taaacaggtt ccgtgagaac ttgttaaacg tcaagtacag      1560
     acacaactta aatattacaa tcccaacgat tttaagcaca cctatagtgg ctgagatcgg      1620
     tgaggatatc gaaagtgtag gagaatcaga aatagaaata aaagaagagg atctccacga      1680
     tcttgcaatt ccagcggtaa taacattacc cgaattactt gaagaagaac tttcagattc      1740
     aaatacagga ataagaatac aggaaacgga caaaatgaca gactctgccg caacagcaag      1800
     ggaatatgtg cgacaaattt cgtccacaat acctgagttt gacggcaaaa agttaaactt      1860
     gaatagattc ctcacggctc tccggctgat agatctgaca aaaggagatc aggagatgct      1920
     agcggttgag gtaatcaaga caaagatact tggtccatta tcacacaaag ttgaaaatga      1980
     aaagaccatt atcggtataa taaatctatt aaaagcatca gttaaaggcg aatcgcccga      2040
     tgtcatcaaa gcaaaaatgc ttagtacaca acagcgcggc aaaactgcag cgcaatatac      2100
     cacggagata gaaaacctac gtgggttgct cgaagcagcc tatatagatg atggtttaga      2160
     ttccaacaat gcagacaaat tcgctacaaa ggaagccata tctgcaatga ccaagaactg      2220
     tgggcacgat aagctcaaaa ccatattgga agctggaaat ttcaacacga tgaatagcgt      2280
     gattgaaaaa tacatacact gcagtacaga aatgaccggc aattcaaata gtgtattatt      2340
     ctataataat agaggacact atcgaggtaa taattaccga ggaaattacc aaaacagagg      2400
     taatggccga ggaaattata actcctacaa taacaactat agaggcagag gtggttacca      2460
     tggtggaaac agaggacgag gtggtaacca aaattataat agaggtggag gttactcaag      2520
     aggtaaccaa aaccataact ataaaacaag tcatgcccac aatgtccgaa acatacaatc      2580
     ggaaaacgaa cataccccct tgagcgacaa tctacaataa aattatacaa aattaatctc      2640
     aatttaagca tttttatacg attgaagaat atgagtacca attcatgggt aactctttta      2700
     atagatacag gtgcagaaat ttccctgctt aaatgcagaa acaataatct taacgattta      2760
     aatccaaaaa atacaacaaa tatatcagga atagggcaag ggacaattca gtctctaggt      2820
     acactacatt tagaaatgtg tattgctaat gcagcaatac catatgaatt ccatatcgta      2880
     cctaacaatt ttcctatacc aggggatggt ataattggct tggatttcat taagaaatac      2940
     aattgtattt tggaattcca cgaccaagaa gattggttca ctttgaggcc caaaaatttc      3000
     aggaacataa acattcctat tatacataca ctagataatg aaataatttt gccagctaga      3060
     tcagaagtga ttcgaaagat tcaactaaca tctactgaca cacatgttct cattcccaac      3120
     caagaattac aacctagcat aataatcgca agtgcactcg taaacactca gaacgttttg      3180
     attcgaatta ttaatacaac tgaaaaagac gctatagtta gtagcgcaaa tataaaaagc      3240
     gaatcattgg atgattatga tgtatacaac gcaaatatag aaaatagtgc acaaagaact      3300
     tcagaagtat taaaacttct taaatttcca tcgttattca aaagcgattt aacaaaatta      3360
     tgcaccgaat atagcgatat ttttggtctt gaaacagaaa ccatatcagc taataatttt      3420
     tacaagcaaa aattgagatt aaatgacaaa actccagtct atatcaaaaa ctatagaatg      3480
     ccagaaagtc aaaaaccaga aattcaaagg caagttgaca aattaataaa agatggcatt      3540
     gtcgaacaat ctatttcaga atataatagc cctcttctct tggtacccaa gaaatcactg      3600
     cctaactcgg aggaaaagag atggcgatta gtagtcgatt atcgccaaat aaacaagaaa      3660
     ctgctagcag ataaattccc acttccaaga atagaagaca ttcttgatca attaggccga      3720
     gcaaaatatt tctcgtgcct agacctgatg tcaggatttc atcaaataga attagacgaa      3780
     aggtcaagaa atataacatc tttctcaact tcaacgggag cataccgcta cacgcgatta      3840
     ccatttggtt taaaaatagc cccaaattct tttcaaagaa tgatgaccct tgcattttca      3900
     ggtttaacgc cttcgcaagc atttctgtat atggatgatt tagtagtcat aggctgttct      3960
     gaaaagcaca tgcttaaaaa tctaaccgac gttttcaaat tatgtaggca acataattta      4020
     aaattacatc cagaaaaatg cactttcttt atgaaagagg ttacttattt aggtcacaag      4080
     tgtactgaca aaggtatatt gccagatgac tctaaatatg aggtaataaa gaactacccc      4140
     aaaccagtaa acgcagacga agctagacgc ttcgtggcat tttgcaatta ttacagaaga      4200
     tttattaaga acttttctga gaaatcacgc cacttaacga ggctttgtaa aaagaatgtt      4260
     ccatttgaat ggacaagcga atgcaatgat gtattcgaat atctcaaaag gaaattaatg      4320
     aaaccaacac tccttcagta cccagatttc agcaaacaat tttgcataac cacagatgct      4380
     agtaaacaag catgtggagc ggtactatct caagaccata acggtcaaca gctaccagtg      4440
     gcatacgctt caagaagctt tacaaaaggc gaaagtaata agtccactac agagcaggag      4500
     ctagcagcta ttcactgggc aataaatcac ttcagaccat acgtatatgg tagacatttc      4560
     ttagtacaaa gtgaccatag gccactatca tatctttttt caatgagaaa ccccagttca      4620
     aaattaacca gaatgagact agacttggag gagttcgaat tcacagtaga atatctcaag      4680
     gggaaagata atcatgtcgc agacgcattg ttccgaataa caatcggaga acttaaagca      4740
     ataaatagac agatactaaa ggtaacaaca agatcaacaa caagacagaa aaatacctgc      4800
     gcaggtgaaa aattgcatga accaaatgag aaagaaaata taaaaatgcc caatatctat      4860
     caggtaatca ataacattga tgccaaaaaa tatgttatac tcaaaataga caagcataag      4920
     tgtttgttga aaagaggaaa acaaattata acacgttttg atatgactaa tttttattct      4980
     aatgaaataa tcgatttaga tcaattcttt caaaggctta atgaagaagc aagaataaat      5040
     agcatcattc aaacacaatt gtcaccaagt gaacaaatct tcgaatttgt cactataaag      5100
     aactttaaag aaaagggcaa taaaatacta aaaaatttaa aaatagcgct attaaacaag      5160
     gtgactaaga tagataaaaa tgataaggtt caaataaaag caatactgtc taaatatcat      5220
     gatgatccat cagaaggagg ccattcagga atttctagaa ccctgaggaa aatgaaaaac      5280
     tgttgttgtt ggccacgaat gacgaaggcg ataagtgaat atgttgaaac atgtttgaaa      5340
     tgtcaacaag ccaagactac gaaacatact aaaacaccgt tgacaataac agaaacgcca      5400
     gcaacagcat ttgataaagt tttgatagat accattggtc cactgccaag atcagaaaac      5460
     ggaaatgagt atgctgttac tatcatttgc gatttaacaa aatatttggt aacggtacca      5520
     attccaaata aaagtgcaaa atcagttgct aaggctatat tcgaaaattt tattctaaag      5580
     tacggtccaa tgaaaacaat cacaacggac atgggaacgg aatataaaaa ccaaattata      5640
     gacgacctat gcaaatatat gaagataaaa aacattactt caacagcaca ccatcaccag      5700
     acattaggaa cagtagaacg aagtcacaga actttcaacg agtatgttcg ctcatatata      5760
     tctgttgaca aaaccgattg ggatatatgg atacaatatt ttacttattg tttcaacaca      5820
     acaccatcgg tagttcatga atattgtcca tatgaattag tatttggaag attaccaaga      5880
     cagttcatag attttaacag gatagacaga atagatccta tttacaacat ggatgattat      5940
     tcaaaagaag ttaagctacg attagaaata gcatatagaa gagctaaaaa tatgttagac      6000
     aaggcaaaag ccgatagaaa gataaaatat gatagaaata ttagtaactt tgaattaaag      6060
     ataggagata agatattact taaaaacgaa acgggtcata aacttgacaa taattattta      6120
     ggaccatatt tagtttcaga aataggagat aatgacaaca ttacaattat aggaaataaa      6180
     aataaaaaac agatagtcca taaagatagg ttaaaaattt ttaattcata atacattttg      6240
     tttggttggc caaccacaaa taaaaaacca caaataaaaa accacaaata aaaaaccaca      6300
     aataaaaaac cacaaataaa aaaccacaaa taaaaaacca caaataaaaa accacaaata      6360
     aaaaaccaca aataaaaaac cacaaataaa aaaaccacaa ataaaataaa aaccaataaa      6420
     aacattataa tacaaaactt ttactttgca aaatataatg aaaatatata tatttttttt      6480
     aatatctctt taatcattca tttcaaatat taatgtacat ttaaaaaaaa aaaaaaaaat      6540
     attatatact tgaaaataac ttcatgttat tacgttattt ttcaaaagga gggaga          6596
//
ID   MDG1_LTR    repbase;    DNA;    INV; 442 BP.
XX
AC   X59545;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   22-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   Long terminal repeat from MDG1 LTR-retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; DMLTR4; LTR;
KW   MDG1_I; MDG1_LTR; retrotransposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   442-1
RA   Kulguskin V.V., Ilyin V.Y. and Georgiev P.G.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila
RT   melanogaster: nucleotide sequence of long terminal elements.";
RL   Nucleic Acids Res 9, 3451-3464 (1981).
XX
DR   GenBank; X59545; Positions       1     442.
XX
SQ   Sequence 442 BP; 173 A; 77 C; 63 G; 129 T; 0 other;
     tgtagtatat acgaatataa taacaataat aataacaata ataataataa tattaataat        60
     aattataata tgaatcataa taataagtca actaataagt aaacttagga ccaccctaat       120
     tccttagggt caccctagta gatctttaga tacaccctaa tactaaatat gcgaattcag       180
     gatgtacgcc tttaggggtc ggactcgact cccattggtt atcgagtatg aacttcatac       240
     atacatattg cagaatttgc tagtgtcagc acttggctgt cacaagagat ctccctgtag       300
     accacactaa gatcagttat aaatcaggaa tagatctgga atgtacactc gcttaataaa       360
     aaccaaataa agataaaatg accaactgcg ttttgagact ttattaacta catcagaagt       420
     attagaattc aaattaacta ca                                                442
//
ID   MDG3_DM     repbase;    DNA;    INV; 4986 BP.
XX
AC   .
XX
DT   06-FEB-1997 (Rel. 2.01, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 5)
XX
DE   Internal part of D.melanogaster MDG3 retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; LTR;
KW   mobile dispersed genetic element; Gypsy-like retrotransposon MDG3;
KW   MDG3_DM.
XX
NM   MDG3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4986
RA   Avedisov N.S. and Il'in V.I.;
RT   "[Drosophila retrotransposon mdg3: general structure and
RT   functional domains of a full-scale copy].";
RL   Dokl. Akad. Nauk 344(6), 823-826 (1995).
XX
RN   [2]
RP   1-4986
RA   Dzhumgaliev B.E., Mazo M.A., Baev A.A., Gorelova V.T.
RA   and Arkhipova R.I.;
RT   "Structure of long terminal repeats of transcriptionally active
RT   and inactive copies of the mobile dispersed gene MDG3 in
RT   Drosophila melanogaster.";
RL   Genetika 22(3), 368-377 (1986).
XX
RN   [3]
RP   1-4986
RA   Ilyin V.Y., Arkhipova R.I., Gorelova V.T. and Schuppe G.N.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells.";
RL   Mol. Biol 19, 162-172 (1985).
XX
RN   [4]
RP   1-4986
RA   Avedisov S.;
RT   "MDG3_DM.";
RL   Direct Submission to Genbank (16-FEB-1996)S. Avedisov, Engelhardt
RL   Institute of Molecular Biol., RAS , Department of Genome
RL   Mobility, Vavilov Str., 32, Moscow, 117984, RUSSIA.
XX
DR   [4] (Consensus)
XX
CC   LTRs of MDG3_DM are named LTRMDG3_DM
CC   CDS 29..4513.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(30..4511,4436..4933)
FT                 /product="MDG3_DM_1p"
FT                 /translation="MDDKIILNDFSLTTLKDWLRILGQNTEGTKTELIARL
FT                 QDIPTAVRGDCPPEHPQKNAPPGNDIFSSLDFQNCEINTDHVSVNAMNRKE
FT                 STETGSERETNMFELQQLRAELAEAKAMLNGTRSSLQFQEQQQPEQSKATV
FT                 SSVIQTAQFTQAGATKENTTFHSPQRSNERAESQRFPVDALALAKETITDY
FT                 DGKTCARAWITVVKNIARTFNIDDNHLRILLITKLKGNAQVWLHAHPARLI
FT                 EPIDNLLDQLSLTFGEQSSKAEIRRKFESRKWKTEENFCSYYDEKMALSNG
FT                 INIDDDELLDQMIEGIPLQNFRTQARIQCFSTPSEMLRAFSNIRLPARREP
FT                 PVQPTDYKDAIRCANCNSRGHKADICKKPKREPGSCYACGQLGHLVAQCPT
FT                 RKSVSSNNYVRWFKINFFENAYKPIISECLIDSGSPISIIKKSLINETMKL
FT                 ALVNTCYFGLNNCILKTHGQTTCYVLKGSIKIYFRLIIVCDQSMRYNVILG
FT                 RDFLTACNLNLDPYTLGMIALRKPMEINKISMFTENDSPEKSLENEIVSPK
FT                 SLENEIVSSQSLENEIVSPKSLENEIVSPKSFKNATISPKSLENKIVNQQH
FT                 KETGPISLRDEIVNQQKNVSKSKLSEDEIVNTSKEIVSFKLPKDKNVYEQL
FT                 NHNFDKEVLRICHVTESELEYKIGENVSNRLQLEFDRLFRNFYINAKRPNE
FT                 PTVRSEIQLCLKNPKPFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSE
FT                 YASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVF
FT                 TKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFV
FT                 NKIFADMIRENKVVVYMDDILLATENINEHLETLKEIFKRLVENKLELRID
FT                 KCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCS
FT                 YFRRFIKDFSRLAKPLHDILKKDKPFKFGSEEMICFNMLKDKLIQSPVLAI
FT                 YNHKHETELHCDASSSGFGAVLMQKKEDQKWHPVSFFSKRTTDIESKYHSF
FT                 ELETLAIVYSLRRFRVYLHWRTFKIVTDCNSLILTLSKKELNPRIARWALE
FT                 FQGYDFEIVHRAGSRMQHVDALSRCTNIMVIQTNSFEDNLVICQGKDTKLK
FT                 EIRQLLENTENKLYEMRNGIVYKKTNENRLLFYVPIEMEEQVLYKYHNELG
FT                 HVGRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNI
FT                 PKGNKPFEIIHIDHYGPVDLARPKKHILVIVDAFTKFVRLYATKTTNTKEV
FT                 IQSLNDYFRAYSRPKCIISDRGACFTSGDFDSFLKECNVKHIKIATGSPQA
FT                 NGQVERINRSLGPMISKLIEPDQGLHWDLVLEKVEYTLNNTLHRSIKQYPS
FT                 IMLFGLQQKGQIMDELKEKIEEIGETIEERDLESIRNKGEASQKIAQAYNK
FT                 EYVDKKRKRSGVFTKGTTSWLKILTQQQAQKTKTIRSVHKRHYVMVKNFDS
FT                 TTGIAKKLIPKHKGPYVISKVLKNDRFLLEDVDGFQISRNPYRGVWSIQNI
FT                 KHWQRKIKSLQNRKYNLRNSVQNRKYNLRNSVQNRKYNLRNSVRNRKYNLR
FT                 SNCKTKKTNKKKRKPKKCLRPFKSISTKKNKIRNRTLSFKKR"
XX
SQ   Sequence 4986 BP; 1898 A; 877 C; 947 G; 1264 T; 0 other;
     aatctcagaa gtgggattaa taatccaaaa tggacgataa aatcatcctg aacgactttt        60
     cgctgacaac cctaaaagat tggctacgta ttctgggcca aaatacggag ggcacaaaaa       120
     ccgaattaat cgcgaggctg caagacatcc caacggcagt tcggggcgat tgtccaccgg       180
     agcaccccca gaaaaacgct ccaccaggaa acgacatttt ttcttcactg gattttcaga       240
     attgtgaaat taacaccgat cacgtaagtg tgaatgcgat gaacagaaaa gaatcaaccg       300
     aaactggcag tgagagggag acaaacatgt tcgagctaca gcaactacgc gcagagctag       360
     cagaagcgaa ggcaatgctt aacggaacac gatcgagctt gcagttccaa gaacaacaac       420
     aaccagagca aagcaaggct acagttagtt ccgttatcca gacggcgcag tttacgcagg       480
     ctggcgccac aaaagagaac acaacatttc actcgccgca gcgatccaac gagagagcgg       540
     agagccagcg ttttccagtt gatgctctcg ctctcgccaa agagacgata accgattacg       600
     atgggaaaac ttgcgcgcgt gcctggataa cagtggtcaa aaatatcgca cgcactttca       660
     acatcgatga caaccattta cgcatcttac tcatcactaa acttaaagga aacgcgcaag       720
     tctggttaca tgcgcaccct gctcgattga tcgaaccaat tgacaatttg cttgatcaat       780
     tgtcattgac ttttggcgag caatcatcca aggctgagat ccggcgaaaa ttcgagagtc       840
     gcaagtggaa aaccgaggag aatttctgca gttattacga cgagaagatg gctctctcaa       900
     acgggataaa catcgacgac gacgaactac tggaccagat gatagagggc ataccgctac       960
     aaaatttccg tacccaagca cggattcaat gcttctctac tccatcggag atgctacgcg      1020
     cattttcgaa catccgtttg ccagctcgga gggagccacc tgtacagcca accgactaca      1080
     aagatgccat acgatgcgca aactgtaatt caagaggaca caaagctgac atctgcaaga      1140
     agcccaaacg tgaaccaggt tcgtgctacg cctgtggaca acttggacac ctggtggcac      1200
     aatgtcccac aaggaagagc gtttcatcta ataattatgt aagatggttt aaaattaatt      1260
     tttttgaaaa tgcttataag cccataattt cagaatgcct catagactct ggcagtccta      1320
     tatctatcat taaaaagtca cttattaacg agacaatgaa gttagcccta gttaatactt      1380
     gctattttgg tttaaacaac tgtattctca aaacacatgg acaaaccaca tgttatgttt      1440
     tgaaaggatc aataaaaata tattttcgtt taatcattgt ttgcgaccag tctatgaggt      1500
     ataatgttat tctcggcaga gattttttaa ctgcatgcaa tttaaattta gacccgtaca      1560
     ccttgggaat gattgcgttg agaaaaccca tggaaataaa caaaatatca atgtttactg      1620
     aaaatgatag tcctgagaaa tctttagaaa atgaaattgt tagtccaaaa tcgttagaga      1680
     atgaaattgt tagttcacaa tcgttagaaa atgaaattgt tagccccaaa tcgttagaga      1740
     atgaaattgt tagtccaaaa tcgtttaaaa atgcaactat tagtccgaaa tcgttagaaa      1800
     ataaaatcgt taatcaacag cataaagaaa ctggtccaat atcgttaaga gatgaaatag      1860
     ttaatcaaca aaagaatgtc agtaaatcaa aattatcaga agatgaaatt gttaacactt      1920
     caaaagaaat cgttagtttt aaattgccaa aagataaaaa cgtttacgaa caattaaatc      1980
     acaactttga taaggaagta ctaagaatat gtcatgtaac tgaaagtgag ttagaataca      2040
     aaataggaga aaatgttagc aataggttac aactagaatt cgataggttg tttagaaatt      2100
     tttatataaa tgcaaaaagg ccaaatgaac cgacagttag aagtgaaata caattgtgtt      2160
     tgaaaaaccc gaaaccgttt agctgttctc ctaggaggct ttcatacaca gaaaaagaca      2220
     ggttacaaaa actattagac gaatatttgg aaaacggatt tatacgacca agcgactcgg      2280
     aatatgcatc gcctattgtt ttagtgaaaa agaaaactgg agacttacgt atgtgcgtcg      2340
     actttagaaa acttaataaa atgacaatga aagacaacta tcctctacct cttatagatg      2400
     acttgttaga tagaatgaat gagaaaactg ttttcaccaa actcgatctt aaaaacggtt      2460
     ttttccacgt gcatgttaaa aaagaatcaa taaaatacac ctctttcgtt acaccattag      2520
     gccaatacga gtggctgcga atgccatttg gcctcaaaaa cgccccgtct gtgttccaaa      2580
     gatttgttaa caaaattttt gcggatatga ttagagaaaa caaagtagta gtatatatgg      2640
     acgacattct attggcaacc gaaaatataa acgaacactt agaaacgttg aaagaaattt      2700
     ttaaaagatt agttgaaaat aaacttgaat taagaataga caaatgtgag tttatgcaat      2760
     caagtataaa atatcttggg ttcataataa ataaagacgg cataatgccc aatgacaaag      2820
     gaatcgaggc aataaaaaat ttcccaatac ctaataatgt tcatacagta caaagttttt      2880
     tgggattatg ctcatatttt cgacggttta taaaagattt ttctagacta gctaaaccat      2940
     tgcatgacat tctaaaaaaa gataaaccgt tcaaatttgg tagtgaagaa atgatttgtt      3000
     ttaatatgtt aaaagataaa ttaatacagt caccggtctt agctatatac aaccataaac      3060
     acgaaacaga attgcattgt gatgcaagtt cttctggatt cggtgctgta cttatgcaaa      3120
     agaaggagga ccagaaatgg cacccagttt cattcttttc aaaacggaca acagatattg      3180
     aatcaaaata ccacagtttc gagttagaaa ctttagccat tgtttattcg ttacgtagat      3240
     ttagagttta tcttcattgg aggacattta aaatagtcac cgactgcaac tcattaattt      3300
     tgaccctaag caaaaaagag ctaaacccta ggatagccag gtgggcttta gaattccaag      3360
     gttatgattt tgaaattgtg catagggcag gtagccgcat gcaacatgtt gacgcactga      3420
     gtaggtgtac aaatattatg gtaatacaaa caaacagttt cgaagataat ctagttatat      3480
     gtcaagggaa agatacaaaa ttaaaagaaa tcaggcaatt gttagaaaac acagaaaata      3540
     aattgtatga gatgagaaat ggtatagttt acaaaaagac aaatgaaaat agattgctgt      3600
     tctacgttcc gatagaaatg gaagaacaag tgttatacaa atatcacaac gaacttggac      3660
     acgtaggaag agacaaaatg atagaagcta taatgaaaaa ctattggttt ccaaatttaa      3720
     aacagaagtg tagcacacat atcagcaact gtttaaaatg tatttcattc agtcccaaaa      3780
     caggaaaaac agaaggattt ctacacaaca tacctaaggg aaacaaacct tttgaaataa      3840
     tccatattga ccattatggt ccagtagact tggctagacc gaagaaacat attctagtga      3900
     tagtagatgc attcacaaag tttgtcagac tatacgcaac aaaaactacg aacacaaaag      3960
     aagtcataca atcgttaaat gactacttca gagcatacag taggcctaag tgtatcatat      4020
     cagatagagg agcatgtttc acgtctggcg attttgactc atttttgaaa gaatgcaatg      4080
     ttaaacacat aaaaattgca acaggatcgc cacaagccaa cggtcaagtt gaacgtataa      4140
     accgaagtct tggtccaatg attagcaagt taattgaacc tgatcaaggt ctacactggg      4200
     acttagtctt agaaaaggtc gaatataccc tgaacaatac actacaccgc agcattaaac      4260
     agtatcctag cataatgtta tttgggttac aacaaaaagg acaaattatg gatgagttaa      4320
     aagaaaaaat tgaggaaatt ggagaaacga ttgaagaaag agatttagaa agtattagaa      4380
     ataaaggcga ggcaagtcag aaaatagcac aagcatacaa taaagaatat gttgacaaaa      4440
     aacgaaaacg atcaggagtg ttcacaaaag gcactacgtc atggttaaaa attttgactc      4500
     aacaacaggc atagctaaga agttaattcc aaagcataaa ggaccctatg tcataagcaa      4560
     agttctcaaa aatgatcgct tccttctgga agatgttgat ggatttcaaa tttctcgcaa      4620
     tccttaccgg ggtgtatgga gcatacagaa tataaaacac tggcaaagaa aaattaagag      4680
     tctacaaaat agaaagtata atttgagaaa ctctgtacaa aatagaaagt ataatttgag      4740
     aaactctgta caaaatagaa agtataattt aagaaactct gtacgaaatc gaaagtataa      4800
     tttaagaagc aattgtaaaa caaagaaaac aaacaagaag aaaagaaaac caaaaaaatg      4860
     tttaagaccg ttcaaaagta tctccactaa gaagaataaa ataagaaaca ggacccttag      4920
     ctttaagaaa cgttaattgt tataaaatcc tacgatcggg agatctagtt gtcaggacgg      4980
     ccgagt                                                                 4986
//
ID   Medea       repbase;    DNA;    INV; 21482 BP.
XX
AC   .
XX
DT   05-JUL-2017 (Rel. 22.11, Created)
DT   05-JUL-2017 (Rel. 22.11, Last updated, Version 1)
XX
DE   A composite Mariner/Tc1 transposon Medea from Tribolium
DE   castaneum.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Medea.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-21482
RA   Lorenzen M.D., Gnirke A., Margolis J., Garnes J., Campbell M.,
RA   Stuart J.J., Aggarwal R., Richards S., Park Y. et al.;
RT   "The maternal-effect, selfish genetic element Medea is associated
RT   with a composite Tc1 transposon.";
RL   Proc. Natl. Acad. Sci. U.S.A 105(29), 10085-10089 (2008).
XX
DR   [1] (Consensus)
XX
CC   Causable agent of Maternal-Effect Dominant Embryonic Arrest. Its
CC   5' terminus is a nearly complete Mariner/Tc1 transposon. It
CC   encodes incomplete or defective copies of ATP synthase subunit C,
CC   elongation initiation factor 3, and a gene encoding a helicase
CC   RNase D C-terminal domain.
XX
FH   Key           Location/Qualifiers
FT   CDS           203..745
FT                 /product="Medea_1p"
FT                 /note="DDE transposase."
FT                 /translation="MPPVRRQPRYQQLTPFERGRIVGLREGGMSVREIAAR
FT                 VNRGVATVLRCIRAWEEEGREHRARGSGRPRGTTARQDRYLHFLAFRDRHV
FT                 STRRIGDQWYAAKGRPVTMATVYRRIRSFGLHSYRPHLVLPLTPQQRQHRL
FT                 DWCRARENWDLEWNSVVFSDESRFCLGMHDGRQRVRRVRGER"
FT   CDS           11886..13796
FT                 /product="Medea_2p"
FT                 /note="ATP synthase subunit C."
FT                 /translation="MLAVFETDKKPMVLCTAPRRFGKTVNLSMMQRFLELE
FT                 VDENGKEKTTVLEEKDNYKLFSSEKFKLKVMENKKFVETHFGQYPIININF
FT                 LCDDDVKSKSDAVNVCRSAISEAFRQHSYLYKSKLSPLEDYEKKDCEQWCD
FT                 EFTYTGIPDAKVIKGLGRLAAYLNKFHKRMVFLLVDEYDSIISNALYKVKN
FT                 ADPETELEELEEAASFPIKVIGYALKKFSEIFKGAFITGILDVGGVSISTL
FT                 LGNVLRLQFGSKDLYQDFCGFTEDEVCTLFNRFAVKEELGKKAKDNYNGYL
FT                 NGSKQCLYNPQSIVQFLRNLSLGEGALKNYWQQSGYIHNMYKLFGEGSVRR
FT                 LLYELLQGVKEDFQFRLRPLDIRDLKSLHNILANQNLTCDQEIVVRFLVSL
FT                 GYLTYSFDDRKLQIPNAELIDEITHLLRAYFFERFGINSELAEDCSASFSK
FT                 LTILCNEGESLAQFKEELAKFQNSITCLLQRSTLINPLNEATLQSIITLTC
FT                 SRAGFLFGNEIIIPKHRTKVDVVLFNDKSGIIMELKCDANTDVQDAFEQIF
FT                 QKRYYNVFTNKKYFDERKKFPSLSFVMAMHVNSDNKASVMCLRREDVIHVL
FT                 DDLQLDARKSSLEDRIEIAVNSMGERFINSCREKAIFVS"
XX
SQ   Sequence 21482 BP; 6988 A; 3711 C; 3803 G; 6980 T; 0 other;
     attgtgtagg taaagaactg aaactttgtg aaaatgttgt tacccaccca aaaataaatt        60
     gataacagtt tcttagccat tcctcaaaaa acaacccctt taagaaggtt tttctagtct       120
     ttctggggtt cactgatatg ctttttctgt tggcgataac tatggaaaac tttgttttct       180
     gtgtttattg ggcactaaca gtatgcctcc cgtacgaaga caaccacgtt accagcagtt       240
     aacccctttt gagcgggggc gaattgtcgg gctacgtgaa ggtggcatgt cggttcggga       300
     aattgcagct cgtgtgaatc gtggagtggc tactgtcctg cgatgtattc gggcatggga       360
     ggaagaaggg agagaacatc gagcgagagg ttctggacgg ccacgaggta ctaccgcacg       420
     ccaggatcgg tacctccact ttttagcctt tcgagaccgg catgtctcca cacggcggat       480
     tggtgaccag tggtatgctg caaagggtcg accagttaca atggcaactg tatatagacg       540
     aatcagatct ttcgggcttc actcttatcg tccgcatttg gtgctcccct taactcctca       600
     acaacgacaa catcgacttg actggtgtcg tgcgcgagag aattgggatc tagaatggaa       660
     ttcggtggtc ttttcggatg aatcgcggtt ttgtttgggc atgcatgatg gtcgacaaag       720
     agttagaagg gtacgtgggg aacggtgaaa cgtggccttt tctgtggaac tccctgtagc       780
     tcgaacagtg ggtgtcatga tttggggcgc gatagcctat gatagtaggt caccccttgt       840
     tttcattgag ggatccatga ctgcgcagcg ctatgtacag gaggttctgg aacctgtcgc       900
     agtaccatat gtgcaaacta ttgaaaacgc gtcgtttcaa caggataacg ccacgccaca       960
     ctcagcacgc tttacgttga ggtacttaga agaagttcag gtgcaagttc ttccttggcc      1020
     gcctcgatcg cctgacctct cgccgatcga gcacatatgg gattcaatag gtcggcgagt      1080
     gacgaattta ccccagcctc cacaaacgct agcggacctg cgacgcgaaa ttttgactgc      1140
     ttgggaggcc ctgccccaag acgaaattaa tcatttaatt agaagtatgc cacggagggt      1200
     tgcagagtgt atacatgcac gtggagggcc aacccattat taagtttttt ttgttaaaat      1260
     ttctattttt caattacact tttttcatca tttattgttt actctaccac cattttatat      1320
     ttttaatttc attaaattca acgcattatt tctgggtgtt ccgctttttt tgataagtag      1380
     tatatgatgg cgaggtgtcg tcttttgcgt caagttgaaa aataataacg gtgcaagata      1440
     aataaatcat taatggctta agaaattgcc atgaaattcg atatttcgca gcgaaagttc      1500
     gaacgcgggt ggaaagtgca cgtggcgtct tattttacac cctcatcaag ctcgaactaa      1560
     agcaattaaa agcaacggta tatttaaact tgtggatcag caatttccaa aaatattaac      1620
     gaaatatttg tgatatcaaa actggattcc aaatttttcc gtgcttattt aattaacacc      1680
     gtattgaact ttatcacaac gtgaaataac gtgccaggtt taatttaaaa atgggttttt      1740
     gtgttgattt aaaacgtcaa acaaattttc agtcgtgtta attggatttt ttttacaaaa      1800
     tctactattg ccaaagcagt tgtaacctat tttcaattat ttaaataatt aaaacacact      1860
     ttaagcaatt tttcaaatac atattatttt cccaaaaaat ccaaatttat aaacgaaatt      1920
     ttaaatcgtt aaatgataaa cttgatgtga atgaaattat cattgaccta aaaaacccta      1980
     aaacatccat tagctaattt ttctctaata tgagcgctaa cgaaccataa agtggcgaac      2040
     actaatgact catcctagga aataactcaa tttttgtgct cttttttcaa cactattttt      2100
     aattaaactc atttttttag aaaattaata gcattacaat tttctattat tattattcaa      2160
     ttttaataaa ctaattctca aatgccttca caataacatt ttatcatgcc ttaaaaaaat      2220
     aataagaaac aatgcaatta aaaaaaatgt ataaaatgtg gaaaaataaa ctgtgtgtta      2280
     atgtgagtgt atttgttgtg ttataactgg acttaaatac aggaatacgt gtcttaattt      2340
     taacaggtaa cagaacacaa caaataaaac atcttttcca tttgtaattt ttcaataaaa      2400
     aaatcgcaaa tttacgtaaa atttggaaaa agataacgtc ttgaaacggg catccgccta      2460
     tggatacaaa aataaaagag gcaaactatt tttcttgtga tagaaaagga caatttaaac      2520
     aatttaaaac aacaataaaa attattacta taattattaa acactgactg actcgtttgc      2580
     acaaaaaaag aagaaaaaca gtaaaaatta taaataaaaa ttttgcaaaa cgttatatac      2640
     tgggtgctca aaaaccggcg caccaactca atggagtgtg gtagagaatt gcttacatat      2700
     aaaggtaaaa atagtaaaaa aattattttc ctaaaagtta ttgataatat gtggcaacgt      2760
     tgtctaagag tcgtgatcgc aaaaaaatta atcaacaata aaaataaatt atttttgaaa      2820
     cactttccta ggaaataatt accggtgttg gcacgtctac aaattgtaat tttttttgat      2880
     gaattttaat ttttttttaa ttcaaaaact gctaaagtct gatagtaagt taaaaaataa      2940
     acataaaaat aaaacataaa aacattgaaa aataataaaa actgaagaag ttaacaaaat      3000
     aaatttgtag attttttaaa atataactta aggaattttt ttgagatttt tctcgtaatc      3060
     tagacatgct tctcaacaac gtaccactga gttgagcacc ctgtagaaaa gttgttgtat      3120
     ttggtgagtt gtattacgtg gtaaaattaa tacacgtatt tctgatacac cctgtatatt      3180
     atttttcata tttttaaatt gttttcctgt ttggtatttc tttagttcat aaaaggcaaa      3240
     aactatttta cacattgttt aaattacagg gtgattcaca taaaactata agcttgacaa      3300
     acttacaaaa tcaacaacat tcttaagtca ctcaaaaata aacgatactt aaaaatgttg      3360
     ttcaacttaa ttaattaaat aaaagccaaa agtgctatta cagagagtga tttaattcag      3420
     aattaaacta atttccattt aaatgcatag acaaatgtca agttaatcag atagcaacaa      3480
     ttttttcgta cttcttgttc aaatttggat taagaaacat tttaatattt ttcattatat      3540
     tattttgaca caaaaatcga gaattttaaa acaaagaatc catttatttt aattaaaaaa      3600
     cgttttaggt gaaaacacga aatcccagtg agcgtttcat tcaaataaaa aactgtgcac      3660
     ttaaaccgtt tactttccct ttaactacaa gcagattttt tgcacaatga tgaaatttct      3720
     tctgttgaac aaacttttta atcacacata aaaatatact taccgtttac tgttgctcta      3780
     taaataaata agtttaaaat tatagtgatt aaaatatggt ggatgcgccg ggtaacatga      3840
     catgatatat ttaaaaaaaa aattttgctt acctctggca gttcatcggg cactttaccc      3900
     atccatgtga gcgaaagaat ggagcaatca cttttggcat tgatggtcct ctcaaagtgc      3960
     aggtgcatgt taacaactaa ccccgatttt tttcacacac tctcagatgt tttttttctt      4020
     ccatttggcg ccgtatttag gaatgtgtaa ctcgcagtca atcgatttaa atgtcaataa      4080
     acatatggga gctgaacgga caaacacgtc tacacctcaa catctcaaga cttatattga      4140
     ttttgatttt cggggtaaaa tcgtcaggaa taagctgcga gctttcagcg gtggcgcatt      4200
     ttacagcaaa attcgagcgc atgctccaca aactacggat acgtttcacc ctaggaggcg      4260
     acgcttcatt atattcgtat taagggacaa ggtggatatt aacccttttt taataattct      4320
     tgtgagaaaa aaataccaac ttgtaatttt cccgatttga attttttcga gagcaggcaa      4380
     agttttattt tttatttctc tgaattggct taaaacgcga atataatgct aagtggtgga      4440
     attctcccga gtacattaaa gctgagatct tacagtgata tggctttatt atttattcag      4500
     tggcctgctc ttttcacgtc cctaactatt tttgaagcta tctgaaactt attttaggga      4560
     gagattgcga gaaatgtcga tctcttcccc caaatgtgtc gaattgtgtt tattttctat      4620
     caaaacacag ggggagttca tggtagttgc aataatttag aattttaatt acatcataaa      4680
     ttgtgtgtca atatttacat aatgcacatt caaatacttg taaatacaaa ggcctaaact      4740
     tcgatatgtt cttaacaaaa tctcacaaat aaaactgaaa attgtgttaa aagttacgta      4800
     taatgactta aataacgtaa aaataaccaa tatttcgcgg aaattttgta tgacatattt      4860
     ctctcaaaaa taaataaata tcaaatgttc cttatctgtt tttgtaaatt ttatgcgtgt      4920
     tataataata gcaaaatttt tctgcaaaaa acttaatatt tatcccagac atgtgattaa      4980
     ctaagcgata aatacaaatt taatgccact tttggcaaaa tttaataaat tctccgttta      5040
     tttaactatc agaaatgacc taatttaatt atttaggtaa aaaaaagcaa aaaacacgtc      5100
     cgatttaatt cgaattagtt ttgtggtcgt ttggcttata cgacacaaag tttcgcccaa      5160
     atcttgtgaa gcaaaaaaaa atcaacattt ttgctttatt tttgtaaaca tgttttaaac      5220
     agtttatgaa aagtaaataa gtttctggtt caagaacgaa ccaaatctag taaaacttcc      5280
     atattatttg tcactcaatt ttagcaattt tttttactca agttagcaaa tttttggttt      5340
     attttcagcg aaatattaat aaattatagc tcttctggct gttagaagta ctaaaacgtt      5400
     caaataaaaa aaaattacgt attttttaac ataatgtggt catttttcag ttagttttag      5460
     ccaaaatgcc acaaaaaacc taaaatttac ttaaaaaata cgcttaaaat tttggaaaac      5520
     gtaaaatttt tcgaaaaaaa ttgtagattt tacttctgag atgtccttac acacaagaca      5580
     gatttaagtt taacgtttta aacacatttt tgaacaaaat tttgaaaaaa ataattgcgt      5640
     ttctttttaa aaaaacgtgc taaaatgttt taaaaaacgc aaaaataatg tagctattat      5700
     caacaaaagt gatttttctt atatttttct aagtattctt ttgttttttg gtatgttata      5760
     gcaaaatatc gcaaaaatac taaaataata gtttaaaaac atgctaaaaa cgctcaaaaa      5820
     attaaaacaa aaacataact ttgtaatttt cggcttatcc ttgacgcaga tttgttcaaa      5880
     acaagccaaa ttgaataaaa tagtcataat ttagcccaaa ttttcgggtt tttgtaattt      5940
     ttcagctaat cttaaaaaaa atttcgaaaa aatttcaaac acatgtttcg aaaaaacgaa      6000
     attttgtgtc tattatagca aattttcaaa aaaaaatact aaaaaaatgt aaactctata      6060
     ttatttttga gcaaattttg agtttttttc gacccttcct aggcaaaagt ttgttaaaaa      6120
     acaagctaaa tcaagcccaa atttagccta atttttacag ttgtagattt gttttggttc      6180
     aagaacacac tatgtaaata aattaagata caatttggta tttttcagcc tgtttcaaga      6240
     caagttttca aaaaaaaaag taaaaacgct aacatttttt agaaaatttg gtgcatttcc      6300
     aagtcgtttc taccgaaatt ttgcggaata actgcatttc tgtctgtaaa acgtgccaaa      6360
     acaataaaaa aaacgcaaaa acaatgtacc tactattatc gacaaaagta ttttttatat      6420
     tattattatt atgttatagc aaaatctcgc aaaaacactg taataatagt tcaaaaacgt      6480
     gctaaaaacg ctcaaaaaaa ataaaaaaaa cataactttg tattttcggc ttattcttga      6540
     cgcaaattgg ctcaaaacaa gccaaattga acgaaatagt cataatttag cccaaatttt      6600
     gcggtttaag taatttttca gctaatttta aaaaaatttc aaaaaaaaca aaattttgtg      6660
     tctattacag caatttccaa aaaaatactc aaaaaaattt aaactataca attttcgagc      6720
     aaattttgtg ttttttgtct gttttttgtc aaaagtttat tcaaaaacaa gctaaatcaa      6780
     gctccaattt agtctaattt ggtatttttt cagcctagct gtttaaagaa aagtttaaaa      6840
     aaaaacaccc aaatttttta cacaatttag tgcatttcca agttgttttt accaaaattt      6900
     tgcatttctg tttgtaaaac gtgccaaaac aatcgaaaaa acacaaaaat aatgccattt      6960
     tcaatctaat ctagtatttc cagccagtga aaaacaagtt actaacactc cgccattaaa      7020
     gtagtaccgg accaaaattt agtttttcgg gtaaaacggt ttagttaatt aattaattat      7080
     aattaattaa aaatttgttt gaatttccca attaggagta tgattagggc ttaagggttg      7140
     atcaatttgt ttaatttgag aaccaatccg tgattatcga tccctgtaaa ttcaaaatcg      7200
     aaaaatagcc gcgcaaactc tcgcctgcga ttggcccacc ccgatgtctc acctgtcgcc      7260
     acctgtgagc cgcgccctaa actccccagc tcatcggcgg gcggtccgga gtcaacccag      7320
     cacgcacctg cagccattac gattgcgccg ttgcattcct gcccggtctg tcactccgaa      7380
     gtacacattc caagtgctgg gtggctgggt cacctctctc ttattctatg ggtcacctcc      7440
     taccgacact gtgccgtggt gagtcgccgt taagtgagta cttttcccgc aattttcctc      7500
     ccacaaaacc caactcaagc cccttcactg caccgcttgc tgtgactatt ttgctctttt      7560
     gtttcgtact tgccgggcaa cggcgacttg atcgccccta gagttccttt cagttccttt      7620
     attgggagag ttgggaccac gttgggacac tgaacgtcaa accgagccaa ttttatatta      7680
     tgtggataag gtatatattt ctatcctttt ttattaaaat ttttgttagt aacttatgtc      7740
     agaggtttat gtcgaaaata atttcaaggt tatagttttt gtcaaaggca taaaatgaca      7800
     ttattttacg tcaaatttaa ccaggggcgt agaaaacgta gaaattttgg gattactatt      7860
     taaaaaaaga aaataattga atacctacta atattaatgt tcacatttct gaaatttttc      7920
     gatatttatt ttattattaa atacataact taaaacatac ttcaatgcta aaaatgcttt      7980
     tctttccgtc acaattttta gttaaacatc tcgtcctaaa aattgatcat caagaaccct      8040
     tcacatttct cgtcgtcttt ttaaatttcc caaaaattaa tattaaaggt cgtctcgtgt      8100
     ggaaaacgta acaaaatcgt gaattcccaa taactttata atttgaaaca gaatctaaag      8160
     ctcacgtaaa tgctaaaggc ggccaagcag cgaaggttca actttcctaa aaattagaac      8220
     caattttggg ttcaagtacc tacgtatttt ataaatgcat agacaaattc ccaaaatctc      8280
     atagattttt tacataacat tatttagaca atccactttt ccaaatgctt gttaataata      8340
     aacgtaaaac ttggcaggaa aggttcaatt tctctctctt tcatcgctga ttaccatttc      8400
     ttgaagttaa ggaaaaaatg tttgtgatga agagtttaga cgtaaaattc ttgtacttac      8460
     aaaaaaatct cttttaaaat ttggagttca tataaaaaaa aaacatttct aaacggagtt      8520
     agtcgacaaa aaatggaaag attttttgac aaatttattt gactttttgc caaattactg      8580
     atttctgtcc caatttgttt ttttacacac tccaaccgac gtatatgaaa caaaatttcg      8640
     aaaattgaga ttcagtgtcc caactctccc aatataggaa ctctaatcgc ccctaatacc      8700
     gacatcttgc gccattattg cctccaagtg tcacttcagc ccggattttc attattgttc      8760
     cgggattttc ggtgcacgag cgggattctg gggcggacga gcaaatcgag gccgctggtc      8820
     atacgtttct catatgattt gcgcgaattc ggcccgagtt gctgttacgt aacccgtgct      8880
     ggtaggctgg ggctacctgt gatttgctca caactaacgg acttgccctt gtttcaggtt      8940
     gttaagtgta ttccaaccga ctaaatttaa ttaaataaaa tgttcgcctg cgctatattg      9000
     atcgcccccg ccgccaggag cgccgtaagt accacccttt ttatttctac taacaatttg      9060
     caaatttttc ccaaaactag ctgggatttg ttgggttatg taattttagc ccaaacgcgg      9120
     ttatgtaatg ttttcctcgc aatgcttcta atctgcacca acgtcacgca tttttattcc      9180
     aattttttaa actttgtgta tcaagtccag taaactttga acaacatatt tttaaccgag      9240
     tttcatcatt tgatcgatgc tttattggtt catggaaatt tttatcgcat ttcgttcata      9300
     cagtgtgtcc caaaatcatt ctataacctt taacccaaaa tgcacacaag tgtgttacat      9360
     aacacctgac atttcaaatg cccagccaac taattttgac cactcgtgtt tttaattatt      9420
     ttttacagtg ttatcagttg aggatttcaa cagcagttta attgctcaat tgttttacac      9480
     attgctatgg caaccacttt tggggtgttt aaatttcagc tttagttaca ttttttaatt      9540
     tgtgacataa tagattagat aaattaaaat caaagggcac actgggtgtg tcaccatcac      9600
     tatgaaatag tgataatatt gtgtgcgatt tttcctaaat aatgttagct gttaggtgac      9660
     cttgtcactt gtcatttttg tccatggcaa tgttgatttt tcaattggcg ataaaaaata      9720
     actatcagaa ataacctaat tttagttatt taggtaaaaa aaagcttgtg aagcagataa      9780
     aatatcaaca ttttagcttt atttttgtga acttgtttta aagagttctt gaaaaataaa      9840
     taagtttctg gttcaagaac gaaccaaatc tagtaaacta gtaaacttcc atattatttg      9900
     tcactcaatt ttagcaattt tttttactta agttagaaaa ttttcggttt atttttagcg      9960
     aaatattatt aaattatagc tcttctggct gttagatgta ctaaaacgtt caagaaacgt     10020
     tcaaaaaaaa atacgtattt ttttaacatt atgtggtcat ttttcagttt gttttagcca     10080
     aaatgtcaca aaataccgaa aatttagttg aaaaataagc ttaaaatttt gtaaaacgtg     10140
     aaataacata acttttgatt aaattatttt caaaaactag ttaaatcgag tgaaacaatc     10200
     aattttagca attttttttg aaaaaaaaat ttacatttta cttttgagtc tgacataacc     10260
     gtatacttac aagacagatt taaatttaac gttttaaaca catttttaaa taaaattttg     10320
     aaaaataatt gcttttctga aatgtttttt tatttttttt aacggatttc ttcacgttct     10380
     taagccaaaa actcagctcg aacttgaaat tttgttgaaa ctgcactgaa aaatcgtaga     10440
     ttaagtcgaa tttattattt tttttgagca ttttaagtca agttttaagt tgtaagttta     10500
     gttttctcgt caaatttcac taaactggat cagttttgaa ttggaaatga ctttattttg     10560
     cctcaaaatt aaaaaaaaaa ttttgggctt cgggtaataa attttcagat actttttttt     10620
     tgtactgttg gaaacagttg gaataaaaat gttaaagtat acaaagtgat ttcggctttt     10680
     tctctgctaa atctataaga attttttaat ttttttctca ttttactact atttctttca     10740
     ttttaaaaaa gagcgtgtca tcaataaagg aaacagaagt ttgtaaaaaa taatttattt     10800
     tcataattat tacaccatat ttgtgataat ttagtttaaa aaagtagtgt tatttaatat     10860
     gatgacaata tacattcact gaccaccgtg acgaacgtaa cttccttgga tgtctgaagt     10920
     ggccaaggct tgcgattaac gtttgattgg tgattgtggt ttgattggtg cgttaatttt     10980
     cagcttattt caaactctaa agtatactta aggccattga gcaccgccct cagccaaaac     11040
     ccatcattag tccagagtcc tgtcgttcag caacacaaac aagccacact tctcccagca     11100
     gtgaggagtt tccagaccac cccagtgtcc agggacatcg attcagctgc taaatttatt     11160
     ggtgcaggcg ctgccacagt aggagtagct ggatcaggtt tgttgcgatt gtttttcttt     11220
     taagattgtt tggtgttttg tggcactaat agattccgag cggtttgttt tgtgttatgt     11280
     ttgatgaaaa tcattttttt tccactctgt agaatatcat taatatattc aaggaatcaa     11340
     atttattata tcctcttgga gaaacatccg tttttataag cagactcgta taatttcttt     11400
     gattttaaga atcttcagaa tcactcatat caaaatggtt gcttttcgtg actgattcgt     11460
     aaaaaatact agtatgcaat acgttgcaaa atgcctttgt tttttgcagc ttattgcata     11520
     aagagcttag agctattaca aattctattt tgaattttgt cattaatcca ttgacttaca     11580
     atgtccgtaa aaggcgcata ttgtacatac tcaaacttac gtaattattg cataaattat     11640
     aagttaaagg gttaattcaa aattcaacgt ttgttaaact cactcaaggt ttgtctatca     11700
     tgcttcccat ttctttgtag tatttttcga tttattgtgc aaacattaat tcgtagtttt     11760
     tattcattgt tacaggcagt ttgtttattg tggaggataa tccggccaat cgtttaacat     11820
     ttagcctttc accggatttt gaagatgtct tggaatccga tacttttgtt gataaaagtg     11880
     ggttgatgtt agcagttttt gaaacggaca aaaaacctat ggtattgtgt accgcaccgc     11940
     gccgatttgg caaaactgta aacttatcca tgatgcaacg attcttggag ttggaagttg     12000
     atgaaaatgg aaaggagaaa acaacggttt tggaagaaaa agacaattac aaactgttca     12060
     gttcagaaaa gttcaagtta aaagtcatgg agaataagaa gtttgtagaa actcatttcg     12120
     gacaatatcc gataatcaat ataaattttc tctgtgatga tgacgtgaaa agcaaatctg     12180
     atgcagtgaa tgtgtgtaga agcgctatat cggaagcttt taggcaacac agttaccttt     12240
     acaaatccaa attgtcaccg ttggaagact atgaaaaaaa ggattgcgaa caatggtgtg     12300
     acgaatttac ctacacagga attccagatg ccaaagtaat caaggggttg ggacgcttgg     12360
     cagcttatct gaataagttt cataaaagaa tggtttttct actcgttgac gagtacgact     12420
     cgattatttc aaatgcgttg tataaagtga agaacgctga tccagagact gagcttgaag     12480
     agctagagga agctgcctca ttcccaatta aagtaattgg atatgctcta aaaaaatttt     12540
     ctgagatctt taaaggagcg tttattaccg gaattttgga tgtgggtggt gtatcgattt     12600
     ccaccctatt gggtaatgta ttgcgactgc aattcggaag caaagatctg taccaagatt     12660
     tctgtggatt cactgaagat gaagtttgta ctctatttaa tcggtttgca gtaaaggagg     12720
     aattgggaaa aaaagcgaag gataactata atgggtattt aaatggctcg aaacaatgcc     12780
     tatataatcc tcaatcgatt gtgcagtttt tgagaaattt atctctggga gaaggtgctt     12840
     taaaaaatta ttggcaacaa tctggttaca ttcacaatat gtataaacta tttggagagg     12900
     gtagcgtgag aaggttgttg tatgaacttc tacaaggtgt taaagaagat tttcaattca     12960
     ggttaagacc gttagacata agagatctga aatctttgca taacatatta gctaatcaaa     13020
     atttgacttg tgaccaagaa atagttgttc gatttcttgt atctctagga tacttaacat     13080
     attcatttga tgatcgcaaa ctccaaatac ctaacgctga gctaattgat gaaattacgc     13140
     acctgctacg agcttatttt tttgaaagat ttggtattaa cagtgaattg gctgaagatt     13200
     gttcagcatc attttctaag ctaaccattc tctgtaatga aggtgaatca ttagcacagt     13260
     tcaaagaaga attagcaaaa tttcaaaata gtataacctg tctacttcaa cgttcaacac     13320
     ttatcaatcc attgaatgag gcaactttac agagtataat tacattgaca tgtagtcgag     13380
     caggatttct cttcggaaac gaaataataa ttccaaagca tagaaccaaa gttgatgtag     13440
     tactgtttaa tgataaatct gggataataa tggaattaaa atgtgatgca aatactgatg     13500
     tacaagacgc atttgaacaa atctttcaaa agcggtacta caatgttttc acaaataaga     13560
     agtattttga tgaacgtaag aaatttcctt ctctttcttt tgttatggca atgcatgtga     13620
     attctgacaa caaagcatct gtgatgtgcc tgcgacgcga ggatgttatt cacgttctgg     13680
     atgatctgca acttgacgct agaaagtcat cgctagaaga tcgcattgag atagctgtta     13740
     attctatggg tgaacgtttc attaacagtt gtcgcgaaaa agcaattttt gtctcttaac     13800
     ataccagaga aaccggttca gtttttgttt gaatttaaag tagctatttt taagttcaac     13860
     gcggcatgtt aatttcagtt tcgatcaact aaatctgttc catttcatat ttatatatag     13920
     ttataataaa acatgaatta caaagtttat attgttttag taggaatgca aagactcctt     13980
     tttgatattg gactttaata attggaagcc ggtctgatgg gttttaacgg ttcagttacc     14040
     caaaccagct tgatcaggaa atgaaatcca caatatttcg gggtattcag gattgatggt     14100
     cgtgccgatg attctcctcg atagacacat acctataaac ggtataagct gtcgtgaaag     14160
     aggagatgct gtaagaatag atcggattgt agtcggggaa tgtttttcgt acgactgtcc     14220
     gattgtttct agagtgacag tgtcggggta gtctttagcc agttgggcca aataagcatt     14280
     aatctttaaa acaataacta aaaacgggag ttattttttc caagtgttac ctcagcgtgg     14340
     cgtaaatatt ggtcaaaagt aatttttccc aaacctaaag cttgtctcga tttgtggtag     14400
     tgtttttcag cctgaatggc ggttccaaca ttttcgattt caatgctaaa ctcaagattg     14460
     ttgagccctc gtatttggca ctagacaagc ccacgagggc tagtactatc agtactggca     14520
     ctttcattgc gatatctact gaggtatcga gagcagaatc tcttttataa acgtggtgga     14580
     taaacaacag tctaatctgc tgattcttcg ataaaattga attgaatttg tcctaattct     14640
     cttttaatcc agtgttttaa cggattacgt cttcaaatat ttgtttagtg gttaaaaatc     14700
     cagcttcaat agtttaatcc cgtgatattt catccttgag tgatacaaga cttttgtcta     14760
     ttattattag ttgtgacaaa agaactaaca aaagtgaaaa cgaataaaaa attaatcctc     14820
     gataaaaatt agtttcatca ataatttttt tagaaatgtg taaaaagtgc cataaattgc     14880
     gacttcataa ttaattaccc gattttaaca aattactgaa taaaaaattt ctcaattatt     14940
     ttatatcgta catatttttg aattaatggt ccgactaatg ccattcaaat actttcgtgt     15000
     taattattat ttattacttc ttgttagtgt gattatttaa tataacgttt ggggcccgtt     15060
     tataaaatgg tttgttaaaa tttaattcgt tgttaaaagt taacaacgca aatcaaatca     15120
     aatttgctaa tttgttagtt gcaaattaac ttaatggccc ttagatatat atatatatac     15180
     aaaaataaaa gtgtctcaga tcaatgcaaa gcgcaaacaa cattcttttt atcaaaacta     15240
     aattacttac ataatgaaat ttgtaaatgg tttctaataa tcttaagcaa aaaaattttt     15300
     cttaatttct gggtttctgg gtccattagt tataactata acttactata actataaagt     15360
     ctacttttgt gccctatttc aataaaagaa atgcaaatcc gctttcatta aaaaggtaga     15420
     tctttaaatt taaacagtca gtatacagcg tgctcaaaaa ctggcgcacc aactcattgg     15480
     tgtgtggtag agaactggtt acatataaag gtaaaaatag taaaaaaatt ctttgaatta     15540
     aagttattga taaataacta attttagata aatgatatgt ggcaacgttg tctaacagtc     15600
     atgatcgcaa tagaatttga gcaacaataa aaataaatta tttttgaaac ggtttcctag     15660
     gaaataattc ccagtgttgg cacatctaca cattgtgatt ttttggatga attttaattt     15720
     tttttaatta aaaaaactgc taaaatctga tagtaaattt aaaaataatt attcatcgtt     15780
     ttgttacgga acgattacct ggtatgaaac atagaaatat aaaaaaataa tgataactaa     15840
     agaagttaac acaataagtt tgtagctcaa gattttttaa aatatgactt taggaatttt     15900
     tttaacattt ttcccgtgat ctacacgtgc ttctcaacaa cgtaccactg cgttggtgcg     15960
     ccagtttttt agcagcctgt agataaatct agataattct tttgttctac acacattcac     16020
     tgaaacttgg ttagataata acttgataat atctataatt atcctgcggt tcttggacgg     16080
     cgtccacgcc aaactggagg ccggcgacaa aaagaaagcc aaagcatggc cccgtcgttt     16140
     cactttcttt tcaggaattc aacaaacgcc aagtcaaaaa agagcaagtt caagagaagc     16200
     tggagaaacg gatgaacaaa ggtcaccaca ggccgtcgat gatagaaaac cagaattaaa     16260
     agtgggtcca tctggggccg gcccctccga ggttcagcac catcgtggga tgcggaattt     16320
     ggggtcggtg cagaggcggg tgctcgccag ccgaacaacg cggcctggct tcgacgacga     16380
     cttcaaggtg ctcccgagag taaataagca tttattgaag acggcaaacg ctcagtcaga     16440
     tcactgaggt actttacacg gggaccatcg acggcaggaa tcggtcttca acgaagctga     16500
     gtacatagag tcgtctccgc cgccaccact gtccagcaac ggcctcacaa ggtccatctc     16560
     ccagcctgac ttcatgcacg aattggaaac aaacggcgac actaaactcc aacaagagcc     16620
     agcgagtatt ttcgtgcgcc caggaattgg aagcatagcg ttttttattt agaaagagca     16680
     taaccaacac attccaaggc cccaacgagg aaagttcaat cgggtcaggg gaaagctacg     16740
     gccccagaac caacactcta tcaatcgaag acgagctatc agaccccgag tccagcgacg     16800
     acgataaccc gaacgccccc ctggaacgct tcttgaccgc ctgggggcta ggagagtacc     16860
     ttctccgctt cgaggagcag aaaatcgacc tggaaacgct gatgatactg acagaaaacg     16920
     atctccaaag cctgaacttg cccctaggcc cgtataggaa acttgtgacc gctgtcagtg     16980
     aacgcaaagc cgcgctggag aatcccggcg aagtcacaga cagcatgttg taaatataga     17040
     gtcaaaatgt gttatttatt cattgtcgtg gacatgataa cggtattact tgtattttat     17100
     gggcactttt tgtacagaca gatgtgtgcc aggcataata tttacaaatt cgtatttaaa     17160
     tttattataa ataaatgtgt gttatgcaaa tgcgagctta ttaaacccac tccttatcaa     17220
     tgttctcttt gcttcaaaga gaaatctgat gtcattgtcc atacgcaata ataggggacg     17280
     taaaatatac tacgaaaaag tggagttacg tgtagaagaa tttgaattta atacaaattt     17340
     ttgcgctgtt gcgttctttg tgatggcaat gagtttttat gcaaaataaa gttagtgaga     17400
     caccaaaata gaaaaaaata atgccttatt gccattagag cttattttct tgctgttttt     17460
     ccaagttaaa tattagttat taacaatgca ataaatcaat taggttgtaa tggaaaaatt     17520
     ttaattaaaa attaattgga gacccaagag tgaaggattt ttaacaggat tccattatta     17580
     tttagcatcg ccaacttaca tcaaatgtcg ctgcggatca gggtgacaat ttttttctga     17640
     aaaaaagtgt agaaaaggta agtgaaacaa cacgtaaaca aaaattagag aattaaattg     17700
     aaaaaaaagt ggatgaaaat gttttctcaa gcgcagcgac atttgatgta agttggccat     17760
     gttattttga tttcaaaagc gccgaatttc aaaaactgtc gattgtcaga atctgcgcgc     17820
     gcacatttct ttttgccaag tgttgtgcac aactcgcggt ttctgcttca acatattgaa     17880
     ttgaacactt cttaacttct gaaagcaagt caaatgacta tgaccgatgg gcaatcagcg     17940
     ggtgaggtcc ccaaattcgt ggcccccgta atccaggaca acccgactgg atgggggccc     18000
     tgcgagctgc ccgaccagtt caaagacatg ccgtaccagc ccttcagctc ggcaaaatca     18060
     gcgactggac gggggccgcc ttccaagaca agaaatatgc cagttagtct gacattgaca     18120
     catgtcaaat ttgaggttaa gtgacttatt tttcgcaatt ttagacaagt atgcgtccca     18180
     gttcggttct ggcagtcaat acgcgtatta tcatgacgaa gacgagagca cttttcattt     18240
     ggtggacaca acacgcgtcc agaagccccc ctatcaacgg gggcgcttgc gcgggcgtgg     18300
     cggccgtgct ggggtgcaag gcagcggcat gcagtccctc ggcaaggggg ttaaagccag     18360
     ggacacgtat aagaggagcc aggttaagaa atggggacaa ggacgggtaa gatctcgctt     18420
     gagttttacc gcaatatagt tggcggtttt agccccagat taagatcagg gacgcttcgg     18480
     ttacggtcaa accggattgg gtcaccattg aggaaatgga tttccctcgg ttgggaaaat     18540
     tgtcgctccc taacgtcaaa gacggttggt ttaattaagc aatgcgaatt tttctatttt     18600
     ggtttttagg cgaggatatt acttgttgtg gcgagttgga gtactatgac aagtcgtacg     18660
     atcatgtcaa cgtgaagaat gagaagccgc tgcaaagcgt caatcgtatc ttccatacag     18720
     tgggttattt ttaatatcat tgatggcaaa aaattaaaat taattatcct caggttacaa     18780
     caactgatga tccgattatc cgtaagttga gtaaaacgga gggcaatgtg tacgccactg     18840
     atgcgatcct tgcgaccatc atgtgctgca ctcgctcgaa ttgaaaaaat tggtactgtg     18900
     cccttacaag tgtaacaaaa ctcaaacaaa atttttcagg cgataaactc tgacaatacg     18960
     gagtttgatc ttttaaccgt caacgaaacg tccgtggagc ccccacaaga cgacggcaac     19020
     tccttaaact cccctcgaaa cctggccttg gaagccactt tcattaacca caatttcagt     19080
     caacaggtat taagaacagg tcccggggag ccccgcttca agttcgacaa cccaaaccct     19140
     tttatctccg aggaggagga aggggaggtc gccagtgtgg cctacagata ccgcaaatat     19200
     gacctaggga gcggaatagt aattttttcg ttttgtttct gtccacgttt aatttgtgta     19260
     gtttttggtt gtccgttgcg aacacgatgc cgtggtccag tccccgaacg gcgagctcca     19320
     attcctgtca atcaaggcct tgaacgaatg ggattccaaa ttggccaatg gggtggagag     19380
     gcgccgtttt ggccaatgag ctgcgtaata acgcctgcaa gctggccaaa tggaccgttc     19440
     aggcgttgct ggctggcagc gaccaaatta aattcggtta cgtttcccgg gcacatgtca     19500
     gggataacag caaacatgtt attctgggta cgcagcagta taagccgcac gagtttgcca     19560
     ctcagattaa tctgaatatg gataatgcgt gggggattct gcggtgtatt attgacattg     19620
     ttatgaaaca gaaggatggg aagtatttga ttatgaaaga tccgaataag ccgatgatcc     19680
     ggttgtacga tattccggat aatacattcg aatcggacgg ggagtcggag tcggaggatg     19740
     aggtgccccc tgattccgtg actttccaga ccctttatcc atacaccaac agtgcgaaac     19800
     gctagatttt gtatttttat catctattag cgaaaggccg aaataaaatg atcaataaat     19860
     aataatttgc agttaattct cgtgcatagt attaaccaac aagtgaaaaa aaaaataaaa     19920
     cggactcttg tggtgtagca gcagcaaggt gcatttgctc acgcattttt taattttttt     19980
     caacaaagaa agtaaagctg tcgtattcac aacaaaagaa aaataaaggt aagtgcatta     20040
     ttctattttg ttgcggattt actttattag gtttaggatt tacttattca agattatcag     20100
     cacattttta tgacgtaaga tgtcatatta tcgtattttg ttaatacgtt ccaacattca     20160
     ataactaaat caaattaaca gttttatttt tactcgaact cacataattt gagatgttga     20220
     aaagtgataa tcgtttgagt gcaacatttt acaacagatt acctacttta taagattttc     20280
     aaacaaattt gatgacatat tgagtttatg atgccgtaaa gtgtattttt ttcaattgct     20340
     catctccaag tgggattgaa tatgtgatac aattaacata ttgtaagtga aatgtggaat     20400
     ggtaggtata ataatgacat aatattaact tggtttttat ttatttgtaa taccttattg     20460
     ctacatattg tagcggaagt agatgccatg aagataagtg cactttaata atttttttca     20520
     ttttcgaaac taatttgtta ttcttccacg aatgaaataa tggagggggg aaaggtttgt     20580
     tactttattt ttttttttga atgaactata taatttatta agtttattgc cgcacttata     20640
     caatacgttt gttattgtct tttccaatat cttaaatgtt ttagttttgt ttttatcaac     20700
     atcaggagcc ctatacccac agtagttttc gaaatatttc acttatgaat tcacattgtg     20760
     gagttaagcg aaatatcttt ctaatttttt caaacacatt aagctgtatt ttgtgaagta     20820
     gcgtttccat aaagacgcat ttgtacccaa atgaaaaaaa taaaagtggt ccaaaccact     20880
     cataaaaaac ataattaact gaataaaatt gaaacttacc aaaaagaatt aatccaaaaa     20940
     aaaacaattt tgtggtctag ttatacttgt gaaaacgttt ggccgcttgc ttgttccaga     21000
     agggcttcct gtccctttgg ggcaaagtgt tcctcaagtc aaacatgttt tgcacatttt     21060
     tgccaatttg attattccat tttttcttat tacttcccga cggttcattt ctaccaaacc     21120
     cagtttggtt aaatttacgt ttatttctag aaaattatta aaccggacgg gatttccctc     21180
     cgacaatatt tgcataattt cgtccaaatg ttccttcacg tgtgatgact gcgaaatttg     21240
     catatcagcc gaatcactcg gcatttgcaa aaccaaggtc tccatattac tcttaggtaa     21300
     gacacagccc acgtttttgt ccaaatattg ggcaatttgg tgcctccagc tgttcagttt     21360
     ttccaaaact aactggcgtt tgtgtatttc ttcgacattt ctacgaaccg acaaatacgc     21420
     ttcatcttca actttattca acgcattatt tctgggtgtt ccgctttttt tgataagtag     21480
     ta                                                                    21482
//
ID   Merlin-1N1_PBa repbase;    DNA;    INV; 1218 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   10-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Merlin-type transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-1N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1218
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 635-635 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1218 BP; 370 A; 223 C; 218 G; 407 T; 0 other;
     taaatcttta ctaaaactta cacagctcgg atgactttga tcttgacata tgttgtcaag        60
     gtcatgaccc tgagtaactt tgccttaaca actaggtggc ggtctctcat agtttctgag       120
     atatttaaag ttaaaaatgt ataattagaa ttataaaatt aagaactgta gaatgttttt       180
     gaatgttagt ttcttatagt acacactgta ttatattgaa ggacaatgaa aataagtatt       240
     tacgtttctt tgttatgttt gttactcagt acgcactcaa aacgcttaca cattcagtac       300
     agtttacatc agtacagttg tactaaccca tgtggaacct cgcttcgtgt taaaaagtgt       360
     aaacagtatg ttccgcccct cccctctaga gggggctcca ctaccaaaag atctaaccca       420
     acccatatca caatgataga taaatatcat tgtataccac atcatcattg tgatatttaa       480
     ctaccgcccg tagggggaag ggagagggcg gaacacactg tcttcacgca tacacttttt       540
     aacacgaagc gaggttccac atgggtttac aatttttcac aatgattttt aactatcatt       600
     gtaatacggg ttgggttaga ttagtctttt gatagtggag cccccccgta gggggagggc       660
     ggaacacact gtctccacgc atacactttt taacacgaaa caaggttcca catgggttta       720
     caactttcta cgcaaagttg aactcaaatg tatacgttta gtacaagatg aaacggctta       780
     tggcttgttt tgtttgtaac aaaccttgtt tattggtact ctgtgacatc ggtttacttt       840
     gtatatttgt catagtttgt cagttatcga tcaactatcg ttgttgaaag agtatctgca       900
     tttatataaa ttatcatatt tttcaaactt cttttgttta taacttttta ataaacatcg       960
     agcgacggct aaaatctttt gattgttact caggatgatg accttgacaa tatatgtcaa      1020
     ggtcattgaa atccgtgagg tcgcccaact tatgcagttt tacctctagc tatatatatt      1080
     atatttaact ttaaatatct cagaaactat gagagatcat cacctagttg ttaaagcaaa      1140
     gttactcagg gtcatgacct tgacaacata tgtcaaggtc aaagtcatcc gagctgtgta      1200
     agttttagta aagattta                                                    1218
//
ID   Merlin-1_DF repbase;    DNA;    INV; 1695 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   04-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Merlin-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Merlin-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1695
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1185-1185 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(18..347,351..767,701..1216)
FT                 /product="Merlin-1_DF_1p"
FT                 /note="transposase."
FT                 /translation="MNSKLVRWGSLPREQPFLKHCHAFHEKHFTRKKLLWT
FT                 KSSASASKGKETKQQNNLTMSDTENLSPQRCNGCEMTLSDFIILVKIRKAS
FT                 EIFGKPFVAAEIPNLQKLQKRSFFDGQNGIPLSKICDKNKKKVKCNFKESV
FT                 NKNTFFSGSHLTHKQISRFVAYFVMTPPPHTELLMDEIGIAEHAVVDWSNF
FT                 LREVFFDLALNSHEGKLGGEGKVVEIDEAKFGKRKYNRGRIIEGQWILVVS
FT                 KGEAKISFSGKNHRRTVDFGGFERGSKNIFLIPVPDRKAETLINIIKEKIA
FT                 PKTHIVSDCWAAYNALSACENFEYTHSTVNHSKNFVDPNTGQSTQNIERTW
FT                 RDVRSAVPKYGRVEKHFEGYLAEYIFKRAYHPRKTRIHGIFCAIADLYNPY
FT                 NPRINTPNSEQLAEFELLDLEENADED"
XX
SQ   Sequence 1695 BP; 554 A; 279 C; 326 G; 534 T; 2 other;
     tcaaacattt tttggccatg aattcaaaac tcgtccgttg gggatcactg ccgcgagaac        60
     aaccgttttt aaaacattgt catgcttttc acgagaaaca ctttaccagg aaaaaacttt       120
     tgtggacgaa aagttctgca agtgcgtcaa aaggtaaaga aacaaagcaa caaaataatt       180
     tgaccatgtc ggacacggaa aatttaagtc ctcaacgctg taacggttgt gaaatgactc       240
     tgagtgattt cataatctta gtgaagatcc gaaaagcttc ggaaattttt ggaaaaccat       300
     ttgttgctgc ggaaatccca aacttgcaaa agctgcaaaa aagaagctaa tttttcgacg       360
     gacaaaatgg aattccgctg tcaaaaattt gtgacaaaaa caaaaaaaaa gttaaatgta       420
     atttcaagga atccgtgaac aaaaatacat tttttagcgg atcacatttg actcataagc       480
     aaatcagtcg atttgttgct tatttcgtta tgactcctcc cccacatacg gagttgctga       540
     tggacgaaat tggcattgca gaacatgctg tcgtagactg gtcaaatttc ttgagagaag       600
     tgttttttga tttggcactg aacagccatg aaggcaaact tggtggtgag ggaaaagtgg       660
     tcgagattga cgaagccaaa ttcggaaaaa gaaagtataa tcggggaaga atcatcgaag       720
     gacagtggat tttggtggtt tcgaaagggg aagcaaaaat atctttttga ttccggtgcc       780
     tgataggaag gcggaaacgt taataaatat aatcaaagag aaaattgccc caaaaaccca       840
     tatcgttagt gactgttggg cagcttataa tgctctcagt gcttgcgaaa attttgaata       900
     cacgcacagt acggtcaacc actcaaaaaa ttttgttgat ccgaatactg gccaaagcac       960
     mcaaaatata gaacgcacat ggcgagacgt acgaagcgct gtccccaagt atggaagagt      1020
     ggaaaagcat ttcgaaggct acttggcgga atatattttc aaaagagcat atcaccctcg      1080
     aaaaacsaga attcacggaa ttttttgcgc cattgctgac ctgtacaatc catataatcc      1140
     caggatcaat actccgaatt ccgaacaact cgcggaattc gagcttctgg acctggaaga      1200
     aaacgcggac gaggattgaa ttcatggcca aaaaatgttt gaattgttat gtttattttg      1260
     ttttttaatt tgaattgtta tgttcatttt gtttttattt tattttgaat tcttatgtta      1320
     attttatttt ttttatttga aatcttaagt tttttttttg aatttgaatt gttaagttta      1380
     tttttttttt gaatttgaat tgttaagttt ttattttgtt tttattttaa taaataaata      1440
     caaattacgc tttacaatac tcttttatga atgtttttgg accaaggtag ccctttttca      1500
     gggacggaga ataaattaag tgccacaaaa gtgtttgaat tttcatgttc tttttttggt      1560
     atttttataa ataaataatt aaaatttacg gtttccgcca ctttttatta atgtttaggc      1620
     cccaaggaac ccatttttac caaaaaaaaa ttcctaggcc atttttagca gaagccgcta      1680
     aagcgcaact ttacc                                                       1695
//
ID   Merlin-1_DSuz repbase;    DNA;    INV; 1972 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Merlin-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1972
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 140-140 (2022).
XX
DR   [1] (Consensus)
XX
CC   90% identical to consensus, indicating it is an old family. Part
CC   of this repeat had been integrated into other recent active TEs
CC   of other types.
XX
SQ   Sequence 1972 BP; 607 A; 365 C; 422 G; 574 T; 4 other;
     ggtaatactc tagattaggg gactcacccc cgaaattcgc gaaaaaatta tcctcgatgg        60
     accgcgattt cttaagaatt tacgtgcaaa aagaacttgg cggtcggaca tggttctctt       120
     gtaattgaat ttcaaagttc ccggttttgc tataaaaaac aagtgtgctt ttctcatact       180
     tgctataaaa tcgagttgtc tttaaatttt atgtaatatt gaaatttgta tcaaaaattg       240
     ttgtttattg attcattctg ttcaacatga cgtgccaatc ctgctttcta acgtttggag       300
     attttctcgg catggatggg aaagctcatt tccgcttcct tcaagaccac ggggttgttt       360
     tggacaagcg ggactgtcca acctgctgta ccccatgcaa aataatggag gatgatggaa       420
     agataawgtg ggtctgccgg cgaaggttcg ctgttgaaag ttcgaacaaa aagaagaaaa       480
     taaagaggca gtgtccattt aaggcaagat tttcattcat atatattcaa atattatatt       540
     attaaaaaag taatttctta ggaaagtgcc ttcaaaaaca aattttttga aaattctcgt       600
     gtgccctaca gtgaggcatg caagttcatt gcgtggaact tgaagggctc cacatactca       660
     tttttggagg atgaattgga tggcgtccag accgtggctg attgggcgaa ctttctcagg       720
     gaaatctata tagattggtc ggagaaaagg gttaagaacg caatcggagg cgttggtgcg       780
     acttggaagt tgatgagaca aagattggtc gcaggaagaa taattgcggc cgaataatcg       840
     agggtcagtg ggtgttcggt ggcatcgacc gcgagacgga cgactttttc atggttccgg       900
     tagaggacag gtcaaaggac accctgccat tccaagacaa gatcgctgcc gggaccacca       960
     tcgtctccga ttgctggaga gcgtatgact gtttggacga ctcaggctat caacatctga      1020
     aagtcaacca ctccatcaat ttttttgacc cagtcacgaa ggcaaacacc caaaaaattg      1080
     agcgtctgtg gcgggacctt aaagaaaaca ttccgcacta tggccgaaag aatggatatt      1140
     tggcgcgctt cgccttttta aagaagcaca agccgcacac cstgtgcctc catttcttct      1200
     ttacagccat ggcggatatg ttcaggccga agagcaagtc atatgatgta tgttaaatat      1260
     gaaatcaaaa catcgtatat tgatttcata tttaacatat gtacatcata caatttctca      1320
     tatagaatac ctccgatgtc gactaagttg ttaattagga cactctttgt catatattcg      1380
     gatctgcaac gtggactagg cctatggggg acaccactat aaaaaaaacg agcctggaac      1440
     attacctcaa tgatggttcg gaaaagtgtt cattgaaatt atttgaataa atataaagat      1500
     acaaattgtt ggagtgttat ttaatgcatt aaaatggtgg gggaccgtgg atggccatga      1560
     tcgttcatgg ccgtcactga aacacgatac agcattgtga catcaatcat gtgtccttca      1620
     tagaccgcac tccacgtata acatgattat ttggawatgc tttttcagta gacaaaaaat      1680
     aacatttttt attaaatgaa aaaaaatgtt acatgatttt tataggaact catttgcccg      1740
     aaaatttaat taattttata actacttatt aaaacataat tacwttgatt gaaaatatga      1800
     gaaaagcacc cttgtttttt atagcaaaac cgggaacttt gaaattcaat tacaagagaa      1860
     ccatgtccga ccgccaagtt ctttttgcac gtaaattctt aagaaatcgc ggtccatcga      1920
     ggataatttt ttcgcgaatt tcgggggtga gtccctaatc tagagtatta cc              1972
//
ID   Merlin-1_DT repbase;    DNA;    INV; 1996 BP.
XX
AC   .
XX
DT   05-JUN-2012 (Rel. 17.08, Created)
DT   05-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Merlin-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1996
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1439-1439 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs. ~220-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           676..1305
FT                 /product="Merlin-1_DT_1p"
FT                 /note="transposase."
FT                 /translation="MKGSTISFLREELGWSQQTVVDWSNFLREIYLSWTKK
FT                 NAKQIIGGDGLTVEIDETKIGRRKYNCGRVVDGQWVFGGICRETGDFFLVP
FT                 VEDRSQETLLPIIEANIANGTRIISDCWKSYNGLKDANYSHMTVNHSVNFV
FT                 DPETGANTQRIERLWRDLKENIPHYGRKTEHYQGYLARFTFLKRHPNHTSR
FT                 FHAIFSAMGELFNPERDVSI"
XX
SQ   Sequence 1996 BP; 629 A; 378 C; 410 G; 577 T; 2 other;
     ggtaatagtc tagaagagcg gcctgagcac caaaaaccgc gaaaaaatta ccctcgatgg        60
     accgcgattt cttaggaatt tacgtgcaga agattatttg cggaaatgca tggttctctt       120
     gtaattgcat ttcaaagttg cgtgttttgc tataaaaaca aagtaggatt ttgaggtgtt       180
     ttgtgtcatt ttgctataaa aacaatgtag cattttctag gaatttatgg gtttgctata       240
     aaaaacaagt aggcttttgt tgcttaatca gaaatggcac ttttgatttt tgtttactat       300
     ggattcctgc aacgggtgca ctatttctta taaagacttt cttgccatgg acgaagaaga       360
     agtgtttgca tttctgcaga gacatggagt tgttctaaag agcaaggact gtcccaactg       420
     cagtaagccc gcaacattgt ctttcaatgc gaagagaccg attagtacgc cattttggag       480
     gtgccgcagg atgataagta atcatcaaca gaaacgaaaa ttaagaaaag ttcaatgctc       540
     ctttaaggta acaattgttt aatttaaaaa aatattgctt taaattatat ttgtaaggaa       600
     tccgccatca aacggacatt cttcagcaag tcccacgttg gcattgaaca ggcctgtaat       660
     tttgtggctt gggagatgaa gggttcaaca atctcattcc ttcgggaaga actaggctgg       720
     tcccaacaga cggtggttga ttggagtaat tttcttcggg aaatttatct tagctggacg       780
     aagaagaacg caaaacaaat aataggtgga gacggtttaa ccgtcgaaat tgacgaaacc       840
     aaaattggcc ggcgcaagta taattgcggt cgcgtggtgg atggccagtg ggttttcgga       900
     ggaatttgca gagaaaccgg tgactttttt ttggtgcctg tggaggaccg tagccaggaa       960
     acgctccttc caattataga ggccaacatc gccaatggaa ccagaattat atccgactgc      1020
     tggaagtcat acaatggttt aaaggatgcg aactactctc acatgaccgt taatcactca      1080
     gtaaacttcg tcgaccctga aacgggagcc aatacacagc gaatagagag actatggcgt      1140
     gatctaaagg agaacattcc ccactatggc cggaaaacgg agcactacca agggtaccta      1200
     gcgcgattca cttttttgaa aaggcaccca aaccacacct caagattcca tgcaattttc      1260
     tcagcaatgg gcgaattgtt taatcctgaa cgcgatgtta gtatttaaaa agagatggga      1320
     aatgctaaaa aagcgccgsm ggcaaatttt tagcatttcc catctctttt taaatactaa      1380
     caattaacta tcttaaattt caggaatcca ccgatacgga caatgaaaaa gaataggctt      1440
     aatctgtacc actaaccagc attttttata aataaatatt tactgtccaa tcattaacca      1500
     tagttttata tagcatttta tttactatta caaataagtt acaagtataa ggaggtactg      1560
     ataaagacta aggttgatcc tcctcggatt gcgatttctt aagacacatc ttaaaaatgt      1620
     atatgttggt catccatggt cgcccaagct cttaaggaat cacggtccat cgaggatatt      1680
     aattcgcggt tgtggggtct ggcctgctat aaaaacaatt tcacattttt gtcgaatttt      1740
     ttcgaacgct tattattttg acaacaaacg gaaagcccat atgtttttta tagcaaaatg      1800
     acacaaaaca cctcaaaatc ctagaaaatc ctactttgtt tttatagcaa aacacgcaac      1860
     tttgaaatgc aattacaaga gaacaatgca tttccgcaaa taatcttctg cacgtaaatt      1920
     cctaagaaat cgcggtccat cgagggtaat tttttcgcgg tttttggtgc tcaggccgct      1980
     cttctagact attacc                                                      1996
//
ID   Merlin-1_PBa repbase;    DNA;    INV; 2116 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 19.03, Created)
DT   07-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Merlin-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2116
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 636-636 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(913..1365,1369..1893)
FT                 /product="Merlin-1_PBa_1p"
FT                 /translation="MHLHEFINMTYNFDCLWNFLCEKKVVRSEVTCPRCRN
FT                 VLILTNVAENHIFHCTNKYYKVIKNRKRQRVVCNFKISAFHGTWFERAHLN
FT                 LPTICRFIGYFLMMQPPRHRFLKNELELNDHTVVDWTNFCREVSKILLIIY
FT                 LCLLLGNILNYCLLQQWLEKEQKQIGGPGKIVELDEAKIGKRKYNTGRIIR
FT                 GQWVFGGIERNTQNVFILPVPNRSVETLLPIIKKYVAAGSIIHTDKWRAYD
FT                 VLHNENYTHMTVNHTTNFVDPESGTHTQNIERLWREMRSHIPRYGTRDYHF
FT                 SHYLAEFLFKKVHNYNERIDAFFNIMNSMYPLNN"
XX
SQ   Sequence 2116 BP; 726 A; 357 C; 369 G; 664 T; 0 other;
     gataaaaatg aagattaggg gatcaccctc caatggcctt gaccttgaca tatgttgtca        60
     aggtcatgac tctgagtgac cttcaaaaag ttttatccgt cggacgtcct tccttaaaaa       120
     gttataatca taaaaagtta attaatatta gaagggcaat aagatatagt caagcgtatg       180
     aaataaaaat aaaactgcat aagttgggcg gcctcacgga tttcaatgac gttgacatat       240
     attgtcaagg tcatcattct gagtaacaat caaaagattc tagccgtcgc ttgacgtata       300
     catttaagtt caactttgcg tagaaagttg taaacccatg tggaaccctg ttttgtatta       360
     aaaagtgtat gcgtggagtc agtatgttcc gtccccccta cgggggggct ccactaccga       420
     aaggaataac ctaacccaac ccttattaca gtgataagga ttggttattc ctttcgtagt       480
     ggagcccccc cagggggggc ggaacatact gattccacgc atacactttt taacacaaaa       540
     cagggttcca catgggttta caactttctg cacgaagttc aattcaaatc tatatgttga       600
     tacactgata aaaattaaat ttcaaaccat ataaaaaaaa tatataagtt tgaataccaa       660
     attaccggta ctaccgatct gtgaaaaatg tcggtagaaa taaacaacag ttacgattca       720
     atgttgaagg acatgtttgt tattgtacgc ttacagatac cctgtttaca gatatcaaac       780
     gattttcaca gatcagtagt gttacgatca ccatcagtat cgtaccgata tcaccatcat       840
     accgacaata tatattagcc agtcaggcac ttaaagaact ttaatacgtg taagacaatt       900
     acatattgta acatgcattt gcatgaattt attaatatga cgtacaattt tgattgtttg       960
     tggaattttc tatgtgagaa gaaagttgta cggagtgaag tgacatgtcc gagatgccga      1020
     aatgtactaa tattaacgaa tgttgctgaa aatcatattt ttcattgtac aaataaatat      1080
     tataaggtta ttaaaaatcg aaaacgacag agagtagtat gtaatttcaa aatcagcgca      1140
     ttccatggaa catggtttga gcgggcacat ttaaatcttc ctacaatttg tcgatttatc      1200
     ggttattttt taatgatgca gccaccacga catagatttc taaaaaacga attggaactt      1260
     aacgatcata ctgttgtcga ttggacaaat ttttgtcgag aagtaagtaa aatactgctt      1320
     attatttatt tatgtttgct attaggtaat atattaaatt attgttagtt acttcaacaa      1380
     tggcttgaga aagaacaaaa acaaattggt ggaccaggta aaatagtaga actggatgaa      1440
     gctaagatag gcaaaagaaa atacaatacc ggtcgtataa ttagaggaca gtgggttttt      1500
     ggcggaattg aacgcaatac acagaatgta tttattttgc ctgtaccaaa tcgatccgtc      1560
     gaaactcttt taccaattat caaaaaatat gtcgcagctg gttctattat ccataccgat      1620
     aaatggcgag catacgatgt tttacataat gaaaattaca cgcatatgac agtcaatcat      1680
     acaactaatt ttgttgatcc tgaaagtggt actcatacac aaaatataga gagattgtgg      1740
     cgagagatgc gatcacacat tcctcgctat ggcacacgag attaccattt ttcacattat      1800
     ctcgcagaat ttttatttaa aaaagtacat aattataatg aacgcatcga tgcttttttt      1860
     aacattatga attctatgta ccctttaaat aattaatata ttaattacaa tttatttcat      1920
     atgcttgact atattttatt gcccttctaa tattaattaa taataattat attaattaac      1980
     tttttatgat tataactttt taacgaagga cgtccgacgg ataaaacttt ttgaaggtca      2040
     ctcagagtca tgaccttgac aacatatgtc aaggtcaagg ccattggaga gtggtcccct      2100
     aatcttcatt tttacc                                                      2116
//
ID   Merlin-2_DF repbase;    DNA;    INV; 532 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   04-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Merlin-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Merlin-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-532
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1186-1186 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. ~140-bp TIRs. 8-bp TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 532 BP; 177 A; 84 C; 95 G; 176 T; 0 other;
     ggtaaaattg cgctttagcg gcttttgcta aaaatggtct aggaattttt ttttttttaa        60
     tggatacctt ggggcctaaa cattaataaa aaagtggcgg aaagcttaaa ttttaattat       120
     ttatgtgtta aaattgcaat tattactgcc gcgaggcaac ccgttttaga acattgccat       180
     gtttttctag cgaaaaactt taccgttgag aatgtgttgt ggatgaagag tgctgcaatt       240
     gtgtgaaaat ttaaaaacaa aagaaattta acaattttac catgtcaggc actgccaatt       300
     ttactactga acgctgtaaa ggttgcgaaa tgactcagag tgattttata gtactgagtg       360
     aatacccaga aaagctatgg ccagttgctt ttttgctatt tttacaaata aatacttaga       420
     aatcaagctt tccgccactt ttttattaat gtttaggccc caaggtatcc attaaaaaaa       480
     aaaaaaattc ctagaccatt tttagcaaaa gccgctaaag cgcaatttta cc               532
//
ID   Merlin-N1B_DTa repbase;    DNA;    INV; 1005 BP.
XX
AC   .
XX
DT   12-AUG-2021 (Rel. 26.11, Created)
DT   12-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1B_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1005
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6212-6212 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 1005 BP; 320 A; 188 C; 181 G; 316 T; 0 other;
     ggtaatacta tacattagcg gactcacccc cgaaattcgc gaaaaaatta tcctcgatgg        60
     accgcgattt cttaagaatt tacgtgcaaa aagaacttgg cggtcggcca tggttctctt       120
     gtaattgaat ttcaaagttc ccgggtttgc tataaaaaac aagtatgctt ttcaaacgtt       180
     tgctataaaa atcatatatg tatatatgta cccttttcct tttttgtcaa aataggacta       240
     atttaaaatt ccaaacatct gagtaattgg tattagaggg aagtagtcct cacaaccgcg       300
     taaaaatgat cctcgatgga cagcgatttc ttaagaactc tcataaccat ggatgaccac       360
     atgtgtattt ttattatggt aatcagaaga aatcgcggtc caaggaggat tatatatttt       420
     aacctttctt ttagtctttt ccacccaaaa ccaaacttaa agattgaatt tgtttttctg       480
     agtgacacaa caacccttat ctagctaaga ctacttgttt aacacagaac aagaaattca       540
     atctttaagt gcggtcgcgg gcggaaaaga cttaaggaaa ggtcacgcta ttataatcct       600
     ccttggaccg cgatttcttc tgattatcat aataaaaata cacatgtggt catccatggt       660
     tatgagagtt cttaagaaat cgctgtccat cgaggatcat ttttacgcgg ttgtgaggac       720
     tacttccctc taataccaat tactcagatg tttggaattt taaagtagtc ctattttgac       780
     aaaaaaggaa aagggtacat atatacatat atgattttta tagcaaacgt ttgaaaagca       840
     cacttgtttt ttatagcaaa cccgggaact ttgaaattca attacaagag aaccatggcc       900
     gaccgccaag ttctttttgc acgtaaattc ttaagaaatc gcggtccatc gaggataatt       960
     ttttcgcgaa tttcgggggt gagtccgcta atgtatagta ttacc                      1005
//
ID   Merlin-N1_AEc repbase;    DNA;    INV; 646 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.03, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-646
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Panamanian leafcutter ant genome.";
RL   Repbase Reports 14(3), 588-588 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~80% identical to consensus. End sequences are similar to those
CC   of Merlin-1_PBa.
XX
SQ   Sequence 646 BP; 171 A; 143 C; 159 G; 173 T; 0 other;
     tgataaatat gccgattagg ggaggcactc cgatgacctt gaccttgaca tatgttgtca        60
     agtcgtgacc tccaacaggt tttagccgtc attcgttaaa aagttattaa caaaaaagtt       120
     tgaaaaatga tgtctctttt ctactatata aaacagaaat tttctgcttt aaaatatatt       180
     ttacaacttt ccacgcgaag cgactctcac cccacctccc cccctgctta ggggcgcacg       240
     actttccacg cgaagcgagt tccatcccat ctcgccaagt tgcttcgcgt ggaaagtcgt       300
     gcgcccctaa gcagggggga gaggtggggt gggagtcgct tcgcgtgaaa gtcgtgcgcc       360
     cctaagcagg gggggaggtg gggtgagagt cgcttcgcgt ggaagtcgtg cgcccctaag       420
     caaggggtgg gagtcgcttc gcgtggaaag ttgtaaaata tactttaaag cagaaaattt       480
     ctgttttata tagtagaaaa gagacatcat ttttcaaact ttttcttttg ttaataactt       540
     tttaacgaat aacgagcgac ggctaaaacc tgttggaggt cactcagggt catgaccttg       600
     acaacatatg tcaaggtcaa ggtcatcgga gctcccctat tcggca                      646
//
ID   Merlin-N1_DTa repbase;    DNA;    INV; 1076 BP.
XX
AC   .
XX
DT   08-AUG-2021 (Rel. 26.11, Created)
DT   08-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1076
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6221-6221 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 1076 BP; 361 A; 193 C; 170 G; 351 T; 1 other;
     ggtaatacta tacattagcg ggctcacccc cgaaattcgc gaaaaaatta tcctcgatgg        60
     accgcgattt cttaagaatt tacgtgcaaa aagaacttgg cggtcggcca tggttctctt       120
     gtaattgaat ttcaaagttc ccgggtttgc tataaaaaac aagtatgctt ttcaaacgtt       180
     tgctataaaa atcatatatg tatatatgta cccttttcct tttttgtcaa aataggacta       240
     atttaaaatt ccaaacatct gagtaattgg tattataggg aactagtcct cacaaccgcg       300
     taaaaatgat cctcgatgga cagcgatttc ttaagaactc tcataaccat ggatgaccac       360
     atgtgtattt ttattatgat aatcagaaga aatcgcggtc caaggaggat tatatatttt       420
     aacctttctt ttagtctttt ccacccaaaa ccaaacttaa agattgaatt tgttttttct       480
     gagcgacaca acaaccctwa tttagctaaa actacttgct taatacagaa caagaaaaag       540
     tgcgccgcag gcgaaaaaaa tttaagaaaa aatcgcgcga ttttttctta aatttttttt       600
     gcttccggcg cagtctttct ttaaatttct tttttaaacg cacttctttc aaatacttcc       660
     tattcgggaa tacttcagca gagagatatc taggccataa aaggttatta aagaaaaaac       720
     ctggaacttt acctcaatgg tggtgcggaa aagtgttcat taaaactttt aatttaaaaa       780
     aattctacat ttttttatag gaactcattt aaacaattaa ataattttat aggaactcat       840
     ttaaacaata tattaatttt ataggaactc attaaaactt aattactttg attgaaaata       900
     tgagaaaagc acccttgttt tttatagcaa acccgggaac tttgaaattc aattacaaga       960
     gaaccatggc cgaccgccaa gttctttttg cacgtaaatt cttaagaaat cgcggtccat      1020
     cgaggataat tttttcgcga atttcggggg tgagcccgct aatgtatagt attacc          1076
//
ID   Merlin-N1_HSal repbase;    DNA;    INV; 1032 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   Merlin-type DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-1032
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1003-1003 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus.
XX
SQ   Sequence 1032 BP; 352 A; 170 C; 161 G; 349 T; 0 other;
     ggtaattatg cagtataggg gatgcacctt caatgacttt gaccttgaca tatgttgtca        60
     aggtcatcac cctgagtaat gtgcaaaagg ttttaggcgg cgctcgttgt ttgttaaaaa       120
     gttatcaaca aaagaagttc aacaaaatga acgtaatttg tattcaccgt ttgtaataaa       180
     caatgaccgc caatttaaac tttttgaatg gtactcagaa ccatcaaaac gaattatcaa       240
     tacgttcgtt tttatataca taagttttgg cacttaaatc tttcgccttt ctaaattgat       300
     aagtctaccg tatactaaaa ttgtagattc cgaaatgatt agcaaaggcc cctacgcaag       360
     gtttggcaat aaattttctt tctaaagtct actaactaaa attaataaag tttggcaatt       420
     aaatctttcg ccttactaaa ttaatgagtc tacgatatac taaaataaca gattctgaaa       480
     agaatagcaa agaccctacg caaggtttgc atttaagtaa tttatttgtg ccaaaccttg       540
     cgtaagggtc tttgctaatc ttctcagaat ctgttatttt agtatatcgt agactcatta       600
     atttagtaag gcgaaagatc gtatttatga aacttgtttt gtattttcaa taattataat       660
     catataataa atttatacga caaaatatat gcaaaaatgt atatttttat aactcttgtc       720
     aacatgatcg tatgctatgc tgcttaaatg aaagatttaa gaatatatga aaggaatttt       780
     ggatatggta atttttggta attatgcagt taagcctctt ctctgctcac atatgtgtaa       840
     agtttaccgt acctaaatgt acacagtgtc gaaaaattac gctcgattaa tgaaacttct       900
     tttgttaata actttttaac aaacaacgag cgccacctaa aaccttttgc acattactca       960
     gagtgatgac cttgacaaca tatgtcaagg tcaaagtcat tgaaggtgca tcccctatac      1020
     tgcataatta cc                                                          1032
//
ID   Merlin-N1_PBa repbase;    DNA;    INV; 1272 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 19.03, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1272
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 637-637 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 8-bp long. This is a Merlin
CC   transposon, partial autonomous elements with either end are
CC   present in the genome.
XX
SQ   Sequence 1272 BP; 416 A; 190 C; 239 G; 426 T; 1 other;
     ggataaagtt ccgaaaacga catacctccg atttcaatga aactttgtga aaactttcct        60
     tttggatcaa aatgaaagcc cctaaaagga tttttggcga ctagcacggg aagaccattt       120
     tttacggtga aatggtaaaa atgttaaata aaactttaca ataatgaaga caagtgctat       180
     gatcttgacc ttgacatatg ttatcaaggt catgatcctg aataatcctt aaagagattt       240
     tagtcgtcgc tcattattta ttaaaaagtt attaacaaaa aatttcgaaa catataacgg       300
     tttatactaa tattaacgaa ccagtactaa tttgttaatg catgtgtaga tagtagacat       360
     gtgggcgagg gagggtttaa ataatactcg tagatctcta ataaatgtaa tataatattt       420
     atttaattaa ttgttgaact aacttagtaa tattttgttt atttcgaact taatattaat       480
     taattgcctg gataaaatgt gtwcaatatc ttttgatttg aaaaaaaaat tacaattatg       540
     attgggacaa gttttaacga ggtgggggtg cagaaggaga ggcggagccc ctcccccgcc       600
     catatgtcta ctatctacac gtgtattaac aaattacaat ttttcataat gatatttaat       660
     tatcactgtg ataagggttg ggttaggtta gatctttcgg tagtggagcc cccgtagaaa       720
     gggggggggg cggaacatac taattccacg tatacacttt tcaacgcgaa gcgaggttct       780
     acatggatgt acaatatttt atgcaaagtt caactcaaat ttatatgttt agtacaagct       840
     aaaataagct ggttggattt tttgaggcag gtttttttgg ggtgagggta tatagggagg       900
     ggcgaaacct caccgttcac atatctacac atgcattaac aaattagtac tggttcgtta       960
     atattagtat aaaccgttat atgtttcgaa attttttgtt aataactttt taataaataa      1020
     tgagcgacga ctaaaatctc tttaggatta ttcaggatca tgaccttgat aacatatgtc      1080
     aaggtcaaga tcatagcact tgtcttcatt attgtaaagt tttatttaac atttttacca      1140
     tttcaccgta aaaaatggtc ttcccgtgct agtcgccaaa aatcctttta ggggctttca      1200
     ttttgatcca aaaggaaagt tttcacaaag tttcatcgaa atcggaggta tgtcgttttc      1260
     ggaactttat cc                                                          1272
//
ID   Merlin-N1_RPr repbase;    DNA;    INV; 765 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Merlin DNA transposons: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-765
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3323-3323 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 765 BP; 219 A; 118 C; 173 G; 255 T; 0 other;
     ggctaatcta aagaatagct ccccggaggt gtggcctgtt tatttttagg gggtgggaag        60
     tacagcgcac ctaccggtga gattttaaac tacttcccgc caatgaactg tttcggattg       120
     tgcgaatttc gtaactctta tgtttcgcgc gcatgcgcag tacacttact gcatagtaac       180
     tgcttccttt ttaatgtatt attagttccc gcgagtgccc tgtttgtgac ttgaggtgcc       240
     ttttttttgt aactttatga gcatgagcgt tttaaatttg cagttttttt ttttaaaatt       300
     aaagcatgat tgtagtgtga gtgaggatgg agtaatgaat gttataaaat tttgttcgat       360
     tttctggagg gagttcgaca agtataccct cctcaggaaa aggactccac agaataaggt       420
     aagtttcttt tgtgttgttc tgtgtaatta ttgtaatgaa tcttgtgaca caaattaaaa       480
     aattgagggt gattaggtag gttaggaggg ggtgtggggg gcgaagcccc ccattaagaa       540
     ataaataaat cagggggtgt ttaaatagaa atatcaatcc taaataaata attcgaagtg       600
     attctgattc gctgttacca tataacccgc cagatttaag tgtaaatata aaataaagaa       660
     atagttttat atttatattt gaatatggcg ggttctatag taacagcgaa tcagaatcac       720
     ttcgaattag gccacacctc cggggagcta ttcttaagat ttacc                       765
//
ID   Merlin-N1_SIn repbase;    DNA;    INV; 937 BP.
XX
AC   .
XX
DT   30-APR-2012 (Rel. 19.02, Created)
DT   04-MAR-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   DNA transposon sequence - a consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-937
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 353-353 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.  8-bp TSDs. End sequences are
CC   similar to those of Merlin-N1_HSal.
XX
SQ   Sequence 937 BP; 306 A; 171 C; 171 G; 289 T; 0 other;
     ggtaaacctt tacaaaaggg gagcagcctc tgacgacctt gaccttgaca tatgttatca        60
     atgggaaggt actgagtgac atacacaagg ttttaagtaa tgctcacttt ttattaaaaa       120
     aatatcatta cagaaagaaa aaacagtttt tcttacttat ttcggaaaat attcatttta       180
     caaaaaaatg tgtcaaacaa aaaatgaagc tagtaataag ctctataaaa aaggtcatat       240
     acatatttta cctaatttca atactttcgt cgttattgta gaaaaactgt tttgcgtcga       300
     aagggttttc gacgcaaaac agtttttcta caatatacag agaacgcgtg ggcgggggag       360
     gggctcgccc ctccccctgc accccctccc cgtatttttt ctaacccaac ccacttcgtc       420
     tcaggtccac taatgacggg gtgggtgcgg gagggggtgg gccataattt caaatctaat       480
     atcgcaacgt caattagata tccttggtca aattacaatt aaaatagggt taggttgggt       540
     tagaaaaaat acggggaggg ggtgcggggg aggggcggag cccctccccc gcccaagcat       600
     ctacttttca cacaaaacta ctaaaaataa aaaaaaatta ttttaaaaca gtttttctac       660
     tataacgact aaagtattga agttagataa aaaatgtata taaccttttt tatagagctt       720
     attactagct tcattttttg tttgacacat tttttcgtaa aatgaatatt tagtgaaata       780
     attaagaaaa actatttttt ctttctctga taatattttt ttaataagaa gtgagcatta       840
     ctcaaaacct tttgtatgtc actcagtacc ttcccattga taacatatgt caaggtcaag       900
     gtcgtcagag gctgctcccc ttttgtaaag gtttacc                                937
//
ID   Merlin-N2_HSal repbase;    DNA;    INV; 872 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 19.04, Created)
DT   04-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-872
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1004-1004 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. TSDs are 8-bp long.
XX
SQ   Sequence 872 BP; 284 A; 172 C; 136 G; 279 T; 1 other;
     ggataaagtt ccgaaaagcc caaaccttcg attgggctga aattttgtgg aaagcttctc        60
     tttagctccg aaatgaaaac ccttgaagga tttttggcga caaagtccca ttcaccacct       120
     acgcccggtc aaagtttaaa cagtttttcc actgtatctt cgaaaatatt gattttggag       180
     aaaaatgtat gtgacaaaaa atgaagctta tgaaacgctc tacaaaaaag gtcatatata       240
     ttattaacgt aaatgcaata cttttaccat tatgttcaaa aatagatatt tacaaaatgt       300
     tattatttac aataccgacg acctctcttc cactaatttc aacaatgttg acatatgttg       360
     ttaaagatat gcattgttta ttaaaaagtt attaacaaag aaagtttggt atatgcgtaa       420
     gttacaagta cgtttagcac ggcgcgctac gcgcgcccca ccccccaccc cccctccata       480
     taaaatattt ttactttaaa atctccttct gtaatacaca ttcatacttc tataatgatt       540
     gactttgaaa atgtaaggtt gagaacaacc gtttcactat ttttcaacta ttattcaaca       600
     taactgcaaa agtattgcat ttacgttaat aatatatatg acctttcttc tagagcgttt       660
     cacaagcttc attttttgtc acatacattt tkctccaaaa tcaatatttt cgaagataca       720
     gtggaaaaac tgtttaaact ttgaccgggc gtaggtggtg aatgggactt tgtcgccaaa       780
     aatccttcaa gggttttcat ttcggagcta aagagaagct ttccacaaaa tttcagccca       840
     atcgaaggtt tgggcttttc ggaactgcac cc                                     872
//
ID   Merlin-N2_RPr repbase;    DNA;    INV; 1590 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Merlin DNA transposons: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1590
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3324-3324 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 1590 BP; 460 A; 229 C; 381 G; 519 T; 1 other;
     ggctaatgta aagaatagcc acccggaggt gtggcctgtt tatttttagg gcatgcgcag        60
     tacagcacac ttaccgttga ctttttaaac tacttcccgc caatgttcag tatattcttt       120
     ttaaatttct caacttcccg ctaatgtgct gtatatactt ttttgaattt tttacctatt       180
     atgtttagcg cgcatgcgca gtacacttac tgcacagtaa ctgcttcctt ttcaatgtat       240
     tatcagttcc cgccagtgcc ctgtttgtga ctttaggtgc cttttttttg aaacttcatt       300
     aaacatgagc gttttgaatt tacagttttt ttttttattt aaagcatgaa tgtagtctga       360
     gtgaggatgg agagatgaaa gttttgaaat tttgtatgga tgttggtttg attagtagta       420
     gatatgtatg tccgaagtgt ggaagtgata tgaaattgat aaaacaaaac agtgcgattg       480
     ataagtatga atggaggtgc cgagtctatt cgaccccttc tcatgatgtg agaagaagtg       540
     tgcgtaaggg ttcatggttt gaaaggagca aaattggtat gattgatgtg ttactgatga       600
     ctgagttttt tgtgcaaaag aggacgcaga gtgatgtgtg ttttgaattg ggttgagtag       660
     agttctgtgt gtgactggcg gagtttttat agagaggtgt gcatggatat tgttattagt       720
     gagagtagta tgcttggtgg tgtcggaaag attgtagaaa ttgatgagag caagtttggt       780
     aagaggaagt ataatagagg aaaacatgtg aatggtaaat gggtgtttgg tggtgtggag       840
     agggggtmga ctaaatgctt tttcagggtc gttgaaagta gggataaagg taccttacta       900
     gatgcatcat taagactttc atactgccgg gttccacaat ttactcggac tgttggaagt       960
     catatgactg tctggaagat gaaggatttc aacatatgaa agtcaaccac tccctaaatt      1020
     ttaaagaccc tgaaactggt gtgcacacga atgcaattga gggacatgga gttccataaa      1080
     aaggcacctg ccacgaagga ccgtcactgg ccagtttgac tcctacttag cggaatatat      1140
     gtggcatagg agtcattctt ccagtggcga ccttatgaga gcatttctgg agggagttgc      1200
     aaaagtgtac aagccatgtg atagggattg ccatgattaa ggtaagttat ttttgtttct      1260
     cttctttata ataattgtta tgaatcatgt atctcaactg gttgcggaat gcaataaaat      1320
     taagggttgt taactagata tggggagggg atgtgggggg cgaagccccc acaaaaaaac      1380
     ttaaataaaa ttatcaatct tgagtataat tgaagtgatt ttgattagct gttaaaatgt      1440
     aacccgcctt tttaaatata taatataaaa taataccaat aataaatatt ttatatttat      1500
     atttaaatat ggcgggttac atggtaacag cgaatcaaaa tcacttcgat attaggccac      1560
     acctccgggc acctattctt gacatttacc                                       1590
//
ID   Merlin-N3_HSal repbase;    DNA;    INV; 759 BP.
XX
AC   .
XX
DT   01-MAY-2012 (Rel. 19.04, Created)
DT   01-MAY-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N3_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-759
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1005-1005 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. TSDs are 8 or 9-bp long.
XX
SQ   Sequence 759 BP; 239 A; 126 C; 135 G; 259 T; 0 other;
     ggtaaatata tagaaaaggg tacacctcac cgattttttt cattttgaaa tatgttataa        60
     aggatgaaat tctgagtgac ttttcctaat acaattatat gggggtcgct tatagtttct       120
     gagatatttg actttaaagt tttataattg tacgttgaag tatatttgaa gtagacaagc       180
     agttttcatt cactttaaat ataggaaaca gtacatataa gcgggagagg ggctccgccc       240
     ctccccaaac aaatcctaac ctaacctaac ttattgcatc tttatatatt tttggacatt       300
     gttgaaaaaa gttctcttaa gatctatcac ctggctcaac ttaacttatt ataatatctg       360
     catataatta ggtgttgtgg cttttaagga gatcttttca acatcgccca acaatatata       420
     aagatgcaat aagttaggtt aggttaggat ttttttgggg agggggtgcg ggggaggggc       480
     ggagcccctc tcccgcttat atgtactgtt tcctatattt ctatgtatac actatgtttg       540
     gattaactgt ttggattgta ctgtaaataa cgtcagctta tgatatctgg aatttaattc       600
     caggataatc aaaattccaa aactttaaaa tcaaatatct cggaaactat aagcgacccc       660
     catatagttg tatcaggaag tcactcagaa tttcatcctt tataacatat ttcaaaatga       720
     aaaaaaccgg tgaggtgtac ccctttctat atatttacc                              759
//
ID   Merlin-N3_RPr repbase;    DNA;    INV; 911 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Merlin DNA transposons: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-911
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3325-3325 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 911 BP; 270 A; 136 C; 196 G; 308 T; 1 other;
     ggctaatgta aagaatagcs cccggaggtg tggcctgttt atttttggtg catgcgcagt        60
     acagcacagt taccgttgac tttttaaact acttcccgcc aatgttcaat atattctttt       120
     taaatttctc aacttcccgc taatgtgctg tatataattt ttttgaattt cttacctatt       180
     tatgtttagc gcgcatgcgc agtacactta ctgcatagta actgcttcct tttcaacgta       240
     ttatcagttc ccgctagtgt ccagtgtgta actttaggtt cctttttttt gaaacttcat       300
     aaaagatgag cgttttgaat ttacagtttt tctttaattt aaagcatgaa tgtagtctga       360
     gggaggataa agagatgaaa gttttatcat tttgaatgag tgttggttta attagtaata       420
     gatatgtagg tccgaagtgt ggaagtgaga taagtatgaa aaggagtcat tcttccatgg       480
     gcgatcaaat gagagcatta tttaagggag tgaataaagt gtagaaacag aaggataggg       540
     attgcattga ataaggtagg cttcttttct tttgtttttc atgtgtctga attacaaatt       600
     agagttgtgt gtggattagt tgggcagtga gggggtgtgg gggcgaagcc ccccataaaa       660
     ataaaaaaga tcagggggcg tgggggcaaa gcccccacaa aaaggtttaa ataaaattat       720
     caatcttgaa ttaataattc gaagtgattc tgattcgctg ttaccatata acccgccaga       780
     tttaaatgta aatataaaat aaagaaatat ttttatattt acatttgaat ttggcgggtt       840
     atatggtaac agcgaatcag aatcacttcg aattaggcca cacctccggg tagctattct       900
     ttacatttac c                                                            911
//
ID   Merlin-N5_HSal repbase;    DNA;    INV; 981 BP.
XX
AC   .
XX
DT   02-MAY-2012 (Rel. 19.04, Created)
DT   04-MAR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   DNA transposon from the Harpegnathos saltator genome: consensus.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   Merlin-N5_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-981
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1006-1006 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. 5'-terminus is not determined.
XX
SQ   Sequence 981 BP; 322 A; 156 C; 146 G; 357 T; 0 other;
     atactaaaat aacagattct gaaaagatta gcaaaggccc ctacgcaagg tttggcaatt        60
     aaatctttcg ccttactaaa ttaatgagtc tacgatatac taaaataaca gattctgaaa       120
     agattagcaa aggctccgca tatacgacgg catacaataa atgtatatag tccaaggccc       180
     tatgcaaggt ttggcaatta aatcttttaa tgcttattta ttgtataaag tttgaaattt       240
     atatatcaat ctgtgcatta ctattatgct tatgcatatt atttatttgt gccagaattt       300
     gtgtcagaat ctgctatttt aatatgatat attaaatatt acattagtaa attaattata       360
     actttttcag atctgttgtt ttagtatatc gtagactcat taatttagta aggcgaaaga       420
     tttaattgcc aaaccttgcg taggggcctt tgctaatctt ttcagaatct ataattttag       480
     tatatggtag atttatcaat ttcagaaatc agtaatacga tttcgatcaa cgcattgatg       540
     ctttttttga gctaatgagc tctatgtatc cattggatcg tttaaatata gtttaaacta       600
     ttcgctttca cattatttca tgttatttct aatatctaag aatatatgta ttataggaaa       660
     acattaaaac tgcatcgtac ttatgaaact tcttttgttt ataacttgcc aataaacaac       720
     atttgctttg tttataaaca gtacgtgttt ctaagaatgc gaagcctctt ctctgctcac       780
     atatgtgtaa agtttaccgt acctaaatgt acacagtgtc gaaaaattat gctcgattaa       840
     tgaaacttct tttgttaata actttttaac aaacaacgag cgacggctaa aaccttttgc       900
     atgttgctca gaatgatgtc cttgacaaca tatgtcaagg tcagtgtcat tgcagtatcc       960
     tcccctaaac aggagtttta c                                                 981
//
ID   Metulj-0_Hmel repbase;    DNA;    INV; 260 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; non-autonomous; Metulj-0_Hmel.
XX
NM   Metulj-0_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-260
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 260 BP; 61 A; 64 C; 77 G; 58 T; 0 other;
     tgaggccagt cgtggcgcag gggcacaagc gtgcgactgt aaacgcgaca ggttgtgggt        60
     tcgattccca ctcgaggaaa tgaaatattt aatattttca tttcctcgct ctggtaacga       120
     ggcaaagcgc ggcgttgagt tccgccactc aacacgcaat gcctccagaa ttcggcggaa       180
     agtggggaac gggaacggag tgtcttaaca ctaggttccc tctgcctacc ctgctatgtg       240
     cgggatacag cgtgaagctg                                                   260
//
ID   Metulj-1_Hmel repbase;    DNA;    INV; 264 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; non-LTR; non-autonomous; Heliconius melpomene;
KW   Metulj-1_Hmel.
XX
NM   Metulj-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-264
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 264 BP; 60 A; 61 C; 74 G; 68 T; 1 other;
     tgaggccagt cgtggcgcag gggcacaaag tgtgactgta aacncgactg gttgtgggtt        60
     cgatccccac tcgaggaaat gaaatattta tttaaattta tattttcatt tcttcgctct       120
     ggtgtcgagg caaagcgcgg cgttgagttc cgccactcaa cacgcaatgc ctccagaatt       180
     cggcggaaag tggggaacgg agtgtcttaa cactaggttc cctctgccta ccctgctgtg       240
     tgcgggatac agcgtgaagc tgat                                              264
//
ID   Metulj-2_Hmel repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; non-LTR; non-autonomous; Heliconius melpomene;
KW   Metulj-2_Hmel.
XX
NM   Metulj-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-267
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 267 BP; 56 A; 63 C; 77 G; 71 T; 0 other;
     tgaggccgtc gtggcgcagc ggcacaaggg tgtgactgta acgcgacggt tgtgggttcg        60
     atccccactc gaggaagtga aatatttatt tacgtttata tttccatttc ttcgctctgg       120
     tgtcgaggca aagcgcggcg ttgagttctg ccactcaaca cgcaatgcct ccagaattcg       180
     gcagaaagtg gggaacggag tgtcttaaca ctaggttccc tctgcctacc ctgctgtgtg       240
     cgggatacag cgtgaagctg atttatt                                           267
//
ID   Metulj-3_Hmel repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Heliconius melpomene; Metulj-3_Hmel.
XX
NM   Metulj-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-270
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 270 BP; 71 A; 56 C; 66 G; 77 T; 0 other;
     tgaggccagt cgtggcgcag tggcacaaag tgtgacagta aaacagactg gttgtgggtt        60
     caatctccat tccaggagat gaaatattta ttgaaattta tatttccatt tcttcgctct       120
     ggtgtcgagg caaaacagtg acgttaagtg ctgctactca acactcaatg ccttcaaaat       180
     ttggcagaaa gtggggaaca gagtgtctta accttaggtt ccctctgcct accctgctgt       240
     gtgcgggata caacgtaaag ctgacttgtt                                        270
//
ID   Metulj-4_Hmel repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Heliconius melpomene; Metulj-4_Hmel.
XX
NM   Metulj-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-267
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 267 BP; 65 A; 57 C; 69 G; 76 T; 0 other;
     taaggtcagt cgtggcacag gggcacaaag tgtgactgta aaaccgactg gttgtgagtt        60
     cgattcccac tcgaggaaat gaaatattta tttaaactta tatttccatt tcttcgctct       120
     ggtgtcgagg caaggcgcgg cgtagagttc cgccactcaa cacgcaatgc ctccagaatt       180
     cgatggaaag tggagttact gagtgtctta acactaggtt ctctctgtct actctgctgt       240
     gtgcgggata cagcgtgaag ctgattt                                           267
//
ID   Metulj-5_Hmel repbase;    DNA;    INV; 253 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Heliconius melpomene; Metulj-5_Hmel.
XX
NM   Metulj-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-253
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 253 BP; 57 A; 63 C; 75 G; 58 T; 0 other;
     aggccagtcg tggcgcaggg gcacaagcgt gtgactgtaa acgcgacagg ttgtgggttc        60
     gattcccact cgaggaaatg aaatatttaa tattttcatt tcttcgctct ggtgtcgagg       120
     caaagcgcgg cgttgagttc cgccactcaa cacgcaatgc ctccagaatt cggcggaaag       180
     tggggagcgg agtgtcttaa cactaggctc cctctgccta ccctgctacg tgcgggatac       240
     agcgtgaagc tga                                                          253
//
ID   Metulj-6_Hmel repbase;    DNA;    INV; 263 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Heliconius melpomene; Metulj-6_Hmel.
XX
NM   Metulj-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-263
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 263 BP; 61 A; 63 C; 74 G; 65 T; 0 other;
     gaggccgtcg tggcgcaggg cacaagggtg tgactgtaac gcgacggttg tgggttcgat        60
     ccccactcga gggaatgaat tattatttat taatattttc atttcttcgc tctggcacca       120
     aggcaaaaaa gcccggcgtt gagttccgcc actcaacacg caatgcctcg aaaaattcgg       180
     cggaaagtgg ggaacggagt gtcttaacac taggttccct ctgcctaccc tgctgtgtgc       240
     gggatacagc gtgaagctga ttt                                               263
//
ID   Metulj-7_Hmel repbase;    DNA;    INV; 241 BP.
XX
AC   .
XX
DT   18-MAR-2014 (Rel. 19.04, Created)
DT   13-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   SINE subfamily from Heliconius melpomene.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Heliconius melpomene; Metulj-7_Hmel.
XX
NM   Metulj-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-241
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 241 BP; 58 A; 58 C; 67 G; 58 T; 0 other;
     tgaggccagt cgtggcgcag cggcagaaac gcgacggttt gtgggttcga ttcccactcg        60
     gggaaatgaa ttatttaata ttttcatttc ctcgctctgg taacgagaca aagcgcggcg       120
     ttgagttccg ccactcaaca cgcaatgtct cgaaaattcg gcggaaagtg gggaacggag       180
     tgtcttaaca ctaggttccc tctgcctacc ctgctatatg cgggatacag cgtgaagcta       240
     a                                                                       241
//
ID   Mf3_MFu     repbase;    DNA;    INV; 700 BP.
XX
AC   AF291758;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   19-FEB-2014 (Rel. 19.02, Last updated, Version 3)
XX
DE   Metopeurum fuscoviride Mf-3 repeat region.
XX
KW   tandem repeat; Mf-3; Mf3_MF; Mf3_MFu.
XX
NM   Mf3_MF.
XX
OS   Metopeurum fuscoviride
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Metopeurum.
XX
RN   [1]
RA   Massonnet B., Leterme N., Simon C.J. and Weisser W.W.;
RT   "Characterization of a (TG) repeat 'Mf-3' in the aphid species
RT   Metopeurum fuscoviride (Hemiptera, Aphididae).";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (31-MAY-2004).
XX
DR   Genbank; AF291758; Positions       1     700.
XX
SQ   Sequence 700 BP; 238 A; 116 C; 133 G; 212 T; 1 other;
     gttataatat tatataatgt gtataagaac ccaaggtgta cggcgcgtaa aaatatatcg        60
     aacgtgtgtg tgtgtgtgtg tgtgagagtg aatattaata ataaaaataa aatatatatt       120
     taatattctc gcggctttct attcagccgt gtgcgntttc ctattgttct aaaaaaataa       180
     taataatata atgtgcggcg cgcgagcagc ctctatgcct acggataacg acccgaaaat       240
     aatgtattct aatttcgatg cctcacgcga acggcggcag cttactccca ccgaggtata       300
     agacgacgta ctatattata tggtatatag gtttattatc ggcagcagca tatataataa       360
     tataatatac gtctaataca acaacaacaa caacaacaac aataatagta acaataataa       420
     tgatatatac gcggggcgat tgcgtataat atattataac gaaataatat aataacagcc       480
     gccgcgaggt cgggacggtg gcgacaaaaa gtaggttaat aattctctga gtctgtgttg       540
     ttcgagacga cgatgattgt cgtaacggga aatccgatca ttttttttag agttacacca       600
     aaaaccaaaa tcgattttgt caaaaaccaa tttagcgtaa gaattcccag gtttccataa       660
     tttttttttg tttttctcga ctttttgaac actattggga                             700
//
ID   MICRO-1_AAe repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Microsatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MICRO-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-240
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1446-1446 (2011).
XX
DR   [1] (Consensus)
XX
CC   10-bp unit.
XX
SQ   Sequence 240 BP; 48 A; 48 C; 48 G; 96 T; 0 other;
     gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc        60
     gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc       120
     gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc       180
     gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc gttttaagcc       240
//
ID   MICROPIA_I  repbase;    DNA;    INV; 4498 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   07-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   MICROPIA_I is an internal portion of the MICROPIA
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; gag; pol;
KW   internal portion; MICROPIA_I; DM2; MICROPIA_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4498
RA   Lankenau H.D., Huijser P., Jansen E., Miedema K. and Hennig W.;
RT   "Micropia: a retrotransposon of Drosophila combining structural
RT   features of DNA viruses, retroviruses and non-viral transposable
RT   elements.";
RL   J. Mol. Biol 204(2), 233-246 (1988).
XX
RN   [2]
RP   1-4498
RA   Bao W.;
RT   "Updated with consensus.";
RL   Direct Submission to RR (07-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   [2]: Updated with consensus sequence. Elements are ~99% identical
CC   to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           252..3971
FT                 /product="MICROPIA_I_1p"
FT                 /translation="MALSNCMEGTASQWLTQISYQGMTWQEFQELFLQRFE
FT                 TEETPAATFLNLLNSRPTAAECYAVYASRLVTTLTTKWRNMEIEEIAVTTV
FT                 LAHMANIDSRLQRVLFTSNVRTRSKLQAELKAFTFDKKRHARDDNLGPDQK
FT                 NRKASPVVCHFCSKPGHRIAECRSKMRQDRQAKPQREKSNVTCYRCGQPGH
FT                 FSNQCPKNGSAAKQDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGAEC
FT                 SLIKDDISSKLSGKRINNTVMIKGIGGGSVCSTLQILSEVTINENIMEILF
FT                 HVVPNEQMRNDILIGREILKQGFYVILTSDNFKVVKSKTVNNCSVTERSFT
FT                 LSDIDTELVDNEKAQLIELLEKHSTSFTNGIPHTRVNTGEMKIRLIDPTKT
FT                 VQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDR
FT                 LCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHP
FT                 ESVEYTAFVTPDGQFEFLTMPFGLKNAPSVFQRAVINALGDLANSFVIVYM
FT                 DDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKTTVQYLGYEVR
FT                 AGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVPGFSQLMKPLY
FT                 SLSSGSGKITWSAELEEIRLKVVTILTNEPVLVIFDPQYPIELHTDASACG
FT                 YGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVKHFRHYL
FT                 VGREFVVYTDCNSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAH
FT                 VDFLSRNPLSPEHILSINKIPEKRVNLSEISSTWLLAEQRLDPEIIEIVNK
FT                 LESDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHE
FT                 SIMHLGWQKTLDKVYQYYWFAKMNKYVRKFVSNCITCRSVKSSSGKVQAEL
FT                 HSIPKTSIPWHTIHIDITGKLSGKSDLKEYVIVQIDAYTKFVYLYHTLKID
FT                 AESCVNAMKSSISLFGVPDRIIADQGRCFTSSKFSEFCVSQKVELHLIATG
FT                 MSRANGQVERVMETLKNLLSVVESSQRSWQDALGEVQLALNCTISRATEAS
FT                 PLEMLIGKQARPLGLVPPCETECEIDLATVRAHATENMNSLASYDKSRFDS
FT                 SRAAVDKHHVGDYVLLRNEERHQTKLDPKFRGPFLVTEVLEGDRYTLKSLT
FT                 SNRSFKYCHEDIRKMPDTEIPNELNENVEQ"
XX
SQ   Sequence 4498 BP; 1393 A; 879 C; 1025 G; 1201 T; 0 other;
     tcagaagtgg gatctgtgcc acaccctgca ttttctgagg atcagtggcg tgcagtagtg        60
     gaaatgcaaa atcggaattt ggctgaactt gtaaaaatca tgcaagtgac gccggcacgt       120
     gagcagcaac cggttatgat gttaagctac ccaaatttaa ccctgatgct gcatgcgtag       180
     aggcagcaaa gtggtgttca acaaccgata taattctaac tgagcacccc cttaaaggaa       240
     gtaaattgat catggcacta agtaactgca tggagggaac tgcatctcag tggctaacac       300
     aaatctcgta ccagggtatg acttggcaag agttccagga attatttctg cagcgctttg       360
     aaaccgaaga gacgccggcc gctacgtttt taaatttact caacagccgc ccgactgccg       420
     ccgaatgtta cgcggtgtat gcgagtcggc tggtgacgac gctgactaca aagtggcgga       480
     atatggaaat agaagaaatt gccgttacaa ctgttcttgc gcatatggca aacattgaca       540
     gtcgtttgca gcgcgtcctc ttcacatcca atgtgcgtac cagaagtaag ctacaggcgg       600
     agttaaaagc gtttacgttc gacaagaagc gacatgctcg agatgacaac cttggacctg       660
     accagaagaa ccgtaaggca tcgccagttg tatgccactt ctgttcaaag ccgggacatc       720
     gaattgctga atgccgaagt aaaatgcgac aagatagaca ggcgaaaccg cagcgtgaaa       780
     aatcaaatgt tacgtgctat cggtgcggcc aaccgggaca tttctccaac cagtgcccga       840
     aaaacggaag tgcagccaaa caagatgtga ctcaacagaa gactgttaac caatgttgtg       900
     tgactgagcc aaagggaagc ttgcatcaac gaggtgagat ctatccaatt tgtttcgatt       960
     ccggtgcaga gtgctccctt attaaagacg acattagcag taagttatct ggtaaacgta      1020
     taaacaatac tgtaatgata aaaggcattg gtggtggcag tgtgtgcagt acattgcaaa      1080
     tcttgagtga agtcactata aacgaaaata ttatggaaat attatttcat gtagtcccga      1140
     acgagcaaat gaggaatgat attctgatag ggcgagaaat acttaaacaa ggcttttatg      1200
     taattttgac atccgataat tttaaagttg taaaatcaaa aactgttaat aattgttccg      1260
     ttactgagcg atcgtttact ttgtccgata ttgacaccga attagtcgac aatgagaaag      1320
     ctcaattaat tgagttactt gaaaagcact cgacttcatt taccaacggg atacctcata      1380
     ctcgagtaaa tacaggcgaa atgaaaatcc gtttgattga tccaactaaa actgttcagc      1440
     gccgacctta cagacttagc cccgaagaga gagaagtagt gcgaatgcag gtgagcgaat      1500
     tgataagatg taatattgtt cgcccaagtt gctctccctt tgctagcccc atgttgctcg      1560
     tcaaaaagaa gaacggaacc gaccgtctat gtgttgattt tagagagcta aactcgaaca      1620
     cgatttcgga taaatacccc ttgccgctta tcagcgatca aattgctaga cttcgcggag      1680
     caaattattt cacatgcctg gatatggcaa gtggtttcca ccaaatcccg attcaccctg      1740
     aatccgtgga atatactgca tttgtgaccc cagacggcca atttgaattt cttacaatgc      1800
     cttttggcct caaaaatgcg ccatctgttt tccagcgcgc agtcataaat gcacttggtg      1860
     accttgctaa ctcttttgta atcgtttaca tggacgacat aatggtagta tcgccaacca      1920
     aggaattggc tttggaaagg ttaaaaactg ttttgaatgt tcttacaaag gctggtttta      1980
     cctttaacct tgctaaatgc agttttctca aaacaacggt tcagtatttg ggctatgaag      2040
     tgcgagcggg agaaattcgt ccgaatgtgc gaaagatagc ttcattaagc tccttgcctc      2100
     ctcctcaaac tgtctccggc gttagacaat tcattggctt ggcctcttac tttcgcaaat      2160
     tcgtgcctgg attctcccaa cttatgaaac cattgtattc actttcgtct ggtagcggca      2220
     agattacatg gagcgctgag ctggaagaga tcagacttaa agttgtgacg atcctcacaa      2280
     atgagcctgt tctggtaatc ttcgacccgc aatatcctat tgagttgcac actgatgcaa      2340
     gtgcctgtgg atatggagcg atacttttgc accgtataga aagtaagccc catgtaatcg      2400
     aatacttcag caaaacaact acctctgttg aatctagata tcactcctac gagctggaaa      2460
     ccttggcagt ggtaaaagcc gttaaacatt ttcgccatta cctagttggc cgtgagttcg      2520
     ttgtctatac agactgcaat tcattaaaag cttctcgcac aaaaatagat ttaaccccca      2580
     gagttcaccg ctggtgggcc tacttacaat cgtttaattt cgaaattcag tatagagagg      2640
     gtaagcgtat ggctcatgtg gatttcctat caagaaatcc tttatcaccc gaacacattt      2700
     tgtcaataaa caagattccc gaaaaacgag taaatctgtc tgaaatttca agtacttggc      2760
     ttcttgctga gcaacggtta gaccctgaga taatagaaat tgttaacaaa ttggagtcag      2820
     atgaattggc cgaaaacttg gccaaaacgt atgatttgcg aaaaggtgta ttatatcgca      2880
     aggtccaaag acgaggtaga acaagttatt taccagttgt acccagagct ttcaaatggt      2940
     cagtaattaa ccaggtacac gagtcgataa tgcatttagg gtggcaaaag acacttgata      3000
     aagtgtacca gtattattgg ttcgctaaaa tgaacaagta tgttcgaaaa tttgtttcaa      3060
     actgcataac ttgtagatca gtgaaatcat cttccgggaa ggttcaggcg gaacttcatt      3120
     ccattccgaa gacaagtata ccgtggcaca ccatccacat agatataacg gggaaattaa      3180
     gtggcaagag cgatttgaag gagtatgtca ttgttcagat cgatgcctat acaaagtttg      3240
     tttatctgta tcacacctta aagatagatg ccgaaagctg tgttaatgct atgaaatctt      3300
     ccatatcctt atttggagta ccagatcgca tcatcgccga ccagggcaga tgttttacta      3360
     gctctaagtt ttcagagttt tgcgtatcgc agaaagttga acttcacttg attgctacgg      3420
     gaatgagccg tgcaaatggg caagtggaac gggtgatgga aacactgaaa aatttgttgt      3480
     cagtggtaga atcaagtcaa cgatcgtggc aggacgcact tggcgaagtc caacttgcac      3540
     tgaattgtac aatttctcgt gccactgagg caagtccgtt agaaatgtta attggtaaac      3600
     aggctcgacc ccttggatta gttcccccat gtgagaccga atgtgaaata gatttggcaa      3660
     ctgttagagc tcatgcgaca gaaaatatga attccttagc gtcttacgac aaatcccgat      3720
     ttgatagcag tagggcagcc gttgacaaac accacgtagg tgactatgtg ctattgagga      3780
     atgaagaaag acaccaaact aagttagatc cgaaattcag aggaccgttt ttggtaactg      3840
     aagtattaga gggtgacagg tatacactaa agtcgttgac gagtaaccga tcgttcaagt      3900
     attgccatga agatatacgt aaaatgccgg atacagaaat cccgaatgag ttaaacgaga      3960
     atgtagagca atagctgaaa tatagaaaca gttgaatgaa aagaaaagcc cgccaatgag      4020
     ttcttttgtg aacgagagac cgcggggcgg gggtatccgt ctaggtgaga cgatgaattg      4080
     tgagttatcc gtctaggtga gacgatgaat tgtgagttat ccgtcaggtg agacgatgaa      4140
     ttgtgagtta tccgtccagg agagacgatg agtttggatt gaattaataa tcaagtgtgt      4200
     gtgaactggc ggaagatcga tatatagaaa tcgataaatg ataatgttaa gataagttgt      4260
     gagctgatgt attactgatc aatggaactg aatatgaaaa tagaataagt tatcccagca      4320
     acagtgaaat aagagctgtt ttgtttcttc acagaattaa gatttaagaa atacacctaa      4380
     taaagtcaaa ctaatgaaat taaatgttat tgaatagtga tgaaagtatg tgatcttgat      4440
     atcttggtat ctcggtatca aaagcttaca cgaggacgtg taaatgtcag aatggccg        4498
//
ID   MICROPIA_LTR repbase;    DNA;    INV; 476 BP.
XX
AC   X14037;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   MICROPIA_LTR is a long terminal repeat from the MICROPIA
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; DM2; MICROPIA_I;
KW   MICROPIA_LTR; Long terminal repeat.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-476
RA   Lankenau H.D., Huijser P., Jansen E., Miedema K. and Hennig W.;
RT   "Micropia: a retrotransposon of Drosophila combining structural
RT   features of DNA viruses, retroviruses and non-viral transposable
RT   elements.";
RL   J. Mol. Biol 204(2), 233-246 (1988).
XX
DR   GenBank; X14037; Positions       5     480.
XX
SQ   Sequence 476 BP; 139 A; 86 C; 119 G; 132 T; 0 other;
     tgtcgtggcg aaaataatga gtatgcgtgt agtcgctgtt tacttcttct ccatgttccc        60
     tttgctatta tgcgtgttcc tatttatgaa cacgtggcga aaataataaa tgcgtgtagt       120
     cgccgtttac ttcttctcca tgttcccttt gctattatgc gtgttcctat ttattgtcaa       180
     tgtgtgagga tgaatagatg aattatctat gaacgggatt ttgcaaaaac gacttgcgct       240
     gcttggttag aaagggaaaa ctatataatg aaaagggaat gccaaaaatt gagaagagac       300
     aaagcaggct gcacgaagct ggagtgaggg cattaatcgt ggagaagcca aagcagacgc       360
     aagtggactc gttgactgcg cacagctgca taaaattata tagtaaaaag agatttgagc       420
     gacgctgata tggacggacg gacggacgcg aggcccctga tattcttaac ccgaca           476
//
ID   MIMO        repbase;    DNA;    INV; 381 BP.
XX
AC   .
XX
DT   03-AUG-2000 (Rel. 5.07, Created)
DT   03-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   Mosquito DNA transposon "MIMO" - a consensus.
XX
KW   DNA transposon; Transposable Element; MIMO; MITE; TE.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-381
RA   Feschotte C. and Mouches C.;
RT   "Recent amplification of miniature inverted-repeat transposable
RT   elements in the vector mosquito Culex pipiens: characterization
RT   of the Mimo family.";
RL   Gene 250(1-2), 109-116 (2000).
XX
RN   [2]
RP   1-381
RA   Feschotte C.;
RT   "MIMO.";
RL   Direct Submission to Repbase Update (02-AUG-2000).
XX
DR   [2] (Consensus)
XX
CC   TA target site duplication. Similar to so called "MITES"
CC   which are likely to represent non-autonomous DNA transposons.
CC   Mimo is a family of miniature inverted-repeat transposable
CC   elements
CC   (MITEs) from the house mosquito Culex pipiens. The 381-bp
CC   consensus
CC   sequence is derived from a multiple alignment of MIMO copies,
CC   which
CC   share both length and sequence conservation (pairwise identity
CC   ranging
CC   from 75 to 96%). Copies possess 23-bp terminal inverted-repeats
CC   and
CC   are flanked by a TA target site duplication.
CC   The estimated copy number of Mimo elements in the C. pipiens
CC   genome
CC   is ~1,000. Despite evidence for recent mobility of some of these
CC   MITEs, it is not known how these elements have spread in the
CC   genome
CC   since none has been found to encode a protein. However, TA target
CC   site
CC   duplication and sequence similarity in terminal inverted-repeats
CC   suggest
CC   a possible affiliation of this mosquito MITE family with
CC   pogo-like DNA
CC   transposons.
XX
SQ   Sequence 381 BP; 126 A; 68 C; 72 G; 114 T; 1 other;
     cagtagttgt tcggtaactg ggcgttgttt aactgggctg ctttttaact gggcgctcga        60
     taactgggcc gtagcccagt taaaaagcag acaaacgtca aaaaaccaaa acaaaccgaa       120
     atgaccgagg ggttaatgga tgcaaaaatc atattcaata aataaaaaaa cttttttcaa       180
     acttttgttt aatttcaagt tacaattaaa gaaaaatgaa aagtaagcat tgtaaataaa       240
     tttgagtaac ttttattttt atatttcatc tggaaaatat tatgcatcgg tggtcccctc       300
     gttattttty gttcagccca gttaacgagc agcattcggt gactgggcta cgttctcagc       360
     ccagttaccg aacaactact g                                                 381
//
ID   MINIME_DN   repbase;    DNA;    INV; 1218 BP.
XX
AC   AF317295;
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Drosophila nigrodunni mini-me retrotransposon, complete sequence.
XX
KW   MINIME_DN.
XX
OS   Drosophila nigrodunni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; dunni subgroup.
XX
RN   [1]
RA   Wilder J. and Hollocher H.;
RT   "Mobile elements and the genesis of microsatellites in
RT   dipterans.";
RL   Mol. Biol. Evol 18(3), 384-392 (2001).
XX
DR   Genbank; AF317295; Positions       1    1218.
XX
SQ   Sequence 1218 BP; 319 A; 272 C; 244 G; 381 T; 2 other;
     caactgtatc tgtatctgtg gcagtgctgc gtgcatctgt gtgtgtgtgt gtgtggctgg        60
     acacacgcta cacttgctcg cagcaactaa ctgactgacc gtccntccct ccctccttca       120
     gtctgtcctt ccttccgtcc atgccactat caacattaac atttttatgc gcctaccacc       180
     aacaacgatt tgattgtgat ttttttaatt tcctttttat actctctgca agagtatatt       240
     gggtttgtgc aaaagtatgt aacaggcaga aggaggcgtg gcagacccca taaagtatat       300
     atattattga tcagcatcac aagccgagtc gatatagcca tgtccgtctg tccgtctgtc       360
     cgtctgtctg tctgtctgtc tgtctgtctg tctgtctgtc tgtctgtctg tctgtccgtc       420
     tgtccgtatg aacaaacaga tttcagagat ggtaagagct acaagttcna gcttggtgtc       480
     aaacgatcag atatttagtc aggcaataca agaatctttt tttttttcga tgccacgccc       540
     cattcgccca caaaaagcaa aaaactggac acacctcgtg aaaaattggt gttttcggca       600
     aatatctcag taactatggc acctaggatc accaattctt gtacgggagt tcctagcgac       660
     agcatagttg cattgccatc tataaatttg gactgccacg cccacttttc ccacaattta       720
     taaaatagtt ttcaagcttc aatgccgttt tttccgtatc gtacagtatt gtagtttata       780
     actggtgtgg agactaacta tattaaacta tcctgaaagg cgcattaaaa tcggactata       840
     aacaagaaaa ctagaagcgt tacaatattg ttaattgaac gcaatatcaa cccattggtg       900
     caagcgagac agaaacacac aagcacatgc tcgaacgttt ttgctgcctg tgtggcggca       960
     gcgctgcccg cggtcgctgg ctgcgccgaa tacacacata catacatgca tgcatcatat      1020
     attgtcaaac gtatgtgtat tcgcaacaaa caaacagatg tgtgtttgat tatgcttaga      1080
     ttgtttttgt ttcaacgtgt tttaatgcaa gtactattca ttgtaatatc tggataccga      1140
     ttttaataat ttaatcggga aaatgcagag agtattatac ggtcgggcgc gctcgactgg      1200
     actttttcct ttcttgtt                                                    1218
//
ID   MinoAg1     repbase;    DNA;    INV; 5660 BP.
XX
AC   AB090816;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon MinoAg1 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; MinoAg1.
XX
NM   MinoAg1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5660
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
DR   EMBL/GenBank/DDBJ; AB090816; Positions       1    5660.
XX
FH   Key           Location/Qualifiers
FT   CDS           590..1954
FT                 /product="MinoAg1_1p"
FT                 /translation="MPSALRSGGLPAHRLSSSLELKQKKSATGTNLPSSPE
FT                 MLILRQNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRREEEARRRE
FT                 EAAKADNEKLRVEQQETHTTLIAISAQLRDLQQKNQMKRQQQHQPPQQPGP
FT                 STSAVSLRNVEVQAQPEEDIDHSSFVEVVRRKPRGINSGKSSSQQREQQQR
FT                 SLQQQQQQQQQQQQQQQEQQQQQQQQRKIRRPKADLIEVVPQEGLTWDSVY
FT                 RKVRDTVRDDPAHKNLEEHIGMGKRTRADLLRIELSRSADSTLVLQEVQEI
FT                 IGGSGVARVVTEMTELLVTHIDPLAEEQELKAALKEELQVNAGVTAVSMWQ
FT                 LFDGMKRARLCLPTKAAKQLAGRKLRLCGCISSIMEAMPVSVDRQRCYRCL
FT                 ERGHLARDCQSPVDRQQACIRCGADGHYAKSCTSEIKCAACNGPHRIGHIS
FT                 CARPAARCLH"
FT   CDS           1756..5358
FT                 /product="MinoAg1_2p"
FT                 /translation="MLPLSGKRPSGARLSISRGSPTGVYSVRRRWSLCQKL
FT                 HFRDQVCCVQRSPPHWPYLLCSSCSAMPALKILQLNVDHCREGQALALQAA
FT                 REHRADILLLSDMHRPPENNGRWAYDVSKKVAVVATGSYPIQRVWGSELRG
FT                 LVAAQVAGITFISVYAPPSLSAHEFERLLGAIELEAASHSRVVVAGDFNAW
FT                 HEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSF
FT                 ASREIVRPDTWSVIPFSRSDHELIAFEVKQPDENPAGAQQHLSHRPQRSTR
FT                 KNPAGRQHDRCDSRRWKTTQFNRQSFRVALRANNFQERAVSHIGMIEALVD
FT                 ACSETMQRISGLHKSPHHDMYWWTPAIKRLRDDCLAARERVQLSHDLEERS
FT                 MAAAAHRTAKSLLEKAIRTSKRQQFQELIDIAETNDYGTGYRVVMSRLRGS
FT                 PGPPETDRAELERIVSDLFPTHPPVSWPVSSDAPTTVPSDSRVEPQELLSI
FT                 AAGMVTRKAPGLDGIPNAAVKVAIEEYTEEFCRLYQDCLSRGTFPPQWKRQ
FT                 RLVLLPKPGKPPGESSSYRPLCMLDALGKVLERLILNRLNRHIEQQDSPQL
FT                 SDAQYGFRRGRSTISAIQRVVDAGTAAKLFRRTNTRDKRCLMVVALDIRNA
FT                 FNTANWQAIADALQSKNVPSYLMKIIGAYFEGRKLLFDTSEGPVERHISAG
FT                 VPQGSILGPTLWNMMYDGVFGVGLPLGAEIIGYADDLVLLVPGTTPTTAAA
FT                 AAEEAVAAVKQWLLEHRLELAHSKTEMTVISSLKQPPEEVFITFGGVNVPF
FT                 SRSIKYLGVRVHAHLSWVPHVKEITLKATRIVHAVNRLMPNLHGPRTSMSR
FT                 LLANVADSTMRYAAPVWHEAIGNQECCRLLRRVQRKSAIGLARTFRTVRYE
FT                 TAVLLAGLLPICLAIKEDTRVHSRRGTGLNCAIRREERQRSMEEWQATWGA
FT                 DAANERASRYVRWAHRVIPDVGSWQSRKHGDVTFHLSQVLSGHGFFREHLC
FT                 GMQLTSSPDCTRCPGVAESAEHAMFECPRFDSTRTELLHGVVPETLLEHML
FT                 QSPENWSNVCEATKRITSALQQDWDETRRELAEQGAPRVADNQHNQDNDRT
FT                 SLYSARNTSEEQRGRRHPTPSPPPRAVGRRAEVRSLGERYRRQLLVVEERR
FT                 QISGHSVGGVTSQEDGTLVEASRQGMNGAEKTAATEADVASR"
XX
SQ   Sequence 5660 BP; 1507 A; 1467 C; 1639 G; 1047 T; 0 other;
     ggaagctgtt ggatgctgtc aggagttgtt tacaaggacg aacgtcaaaa tacgagctcc        60
     tatataatag cggaaaatcg tgtgaaagcg tcaataagtt gtgcggaata gtgcggaacg       120
     tgcttagtaa gcctagggcg cttgcccgtg aagtggagat tgccagctag gtatagagaa       180
     gtgcaagaga acagcatcgt acggattcgg cgccggcgac cccggctggg gcggtctcaa       240
     gccggtgaca gttcaggacg gcgacagccc aatcaccaat catcaacaat tcccaagcag       300
     aaaatttgaa ttggccgttg gtggtgtaag atcggagaat catcttaata cgttcctcgt       360
     atcacggcct agaagttaaa tctggtggat gaggaaaatt ggcacgttca ccaaaaatac       420
     tcccactatc ccccatcaca ccccccccat aatccccttt actcggtgtg ccttaacacg       480
     gtcttaacag gggcggtaaa gaccttcctc gatctcggtg aggcaaacac agatagtact       540
     tgagaaaaaa aaaagaaaaa cccaaaacaa agctggaagg gtaagaataa tgccgtcggc       600
     actccgctcc gggggtttac cggctcaccg gctgtccagt tcgttggaat taaaacaaaa       660
     aaagagtgcc acgggaacca acctcccttc atcacccgag atgttgatat tgcggcagaa       720
     tctggaagag accaggaaga aaaatgagtc tcttcaggaa cagctaactc agttgagatg       780
     gctcatggag gagaagctcc gcgagcagcg agaagatgca cagcgtagag aggaagaagc       840
     gcgtcgcagg gaagaggccg caaaagccga caatgagaag ctgcgggtgg aacagcagga       900
     gactcacact acattaattg caatatcggc acagttgaga gacctgcaac agaagaacca       960
     gatgaaaagg cagcagcaac atcagcctcc ccagcaacca gggccatcga cgtcagccgt      1020
     ctcattgcgg aacgtagagg tgcaggctca accagaggaa gacattgacc acagctcgtt      1080
     tgttgaggta gtgcgccgca agccccgcgg gataaacagc ggcaagtcct ctagtcagca      1140
     acgtgagcag cagcagagat cgcttcagca gcagcaacag cagcagcaac agcagcagca      1200
     acagcagcaa gaacagcagc agcaacagca acagcagcgg aagatacgtc ggccaaaggc      1260
     agacctcata gaagttgttc cccaggaggg ccttacatgg gatagtgtgt accgcaaggt      1320
     acgcgacaca gtgcgagatg acccagcaca caagaatctc gaagaacata ttgggatggg      1380
     taagcgcacg cgagcggacc tccttcgtat agagctcagc cggtcggcag actccactct      1440
     agtgctacag gaagtgcagg aaataatcgg agggtctgga gttgctcgtg tcgtaacgga      1500
     gatgacggaa ctactagtta cccacattga cccacttgcc gaggagcagg aattaaaagc      1560
     agctctcaaa gaagagctgc aggttaacgc tggcgtgaca gctgtaagca tgtggcaact      1620
     ctttgatgga atgaagcggg caagactttg tttgccgacc aaagcagcca aacagcttgc      1680
     cggacgaaag ttgagactgt gcggttgcat cagcagtata atggaagcca tgcccgtctc      1740
     ggtagatcga cagcgatgct accgctgtct ggaaagaggc catctggcgc gcgattgtca      1800
     atctcccgtg gatcgccaac aggcgtgtat tcggtgcggc gcagatggtc actatgccaa      1860
     aagctgcact tccgagatca agtgtgctgc gtgcaacggt ccccaccgca ttggccatat      1920
     ctcttgtgct cgtcctgcag cgcgatgcct gcactaaaaa ttctacaact caacgtagac      1980
     cactgtcggg agggccaggc cttagcacta caagcagcgc gagagcaccg tgctgacata      2040
     ttgcttctgt ctgatatgca caggccgcct gagaacaacg ggagatgggc gtatgatgta      2100
     tccaagaaag tagcggtagt agccaccggc tcgtacccta tacagcgagt gtggggcagc      2160
     gagctacgcg gactagtcgc tgctcaggta gccggtatca cattcatcag tgtatacgcc      2220
     cctccaagcc tatcagcaca tgagtttgag cgactattgg gggccattga gttggaagcc      2280
     gcgtctcatt cccgcgtcgt agttgcgggg gacttcaatg cctggcacga agagtggggc      2340
     agcgggagaa acgggcagcg tgggatcgag ctactgcaaa ctgtggaaac actgggactg      2400
     tcgatcctca atcaaggtcg caaaccaacc ttcatcggac gaggtttcgc ggctagtagt      2460
     gtcattgatg tctcgtttgc gagtcgggag attgttcgcc ccgacacctg gtcagtgatc      2520
     cccttctcga ggtcggatca tgaattaata gcgttcgagg tcaaacaacc agatgagaac      2580
     ccggccgggg cgcaacagca cctgtcgcac cgaccacaaa ggtcgacacg caagaatcca      2640
     gcaggccgac agcatgaccg ttgcgatagt aggcgatgga aaacgaccca attcaaccga      2700
     cagtcatttc gagtagcact acgcgccaac aacttccagg agagagcggt gagccatatt      2760
     ggcatgatcg aggcacttgt cgacgcctgc agtgaaacta tgcaacggat ctctgggctg      2820
     cacaagagcc cacatcacga catgtattgg tggaccccag cgatcaagcg cctacgtgat      2880
     gattgccttg ccgcgcgaga gagagtacaa ctgtctcacg atttggagga gaggagcatg      2940
     gcggcagcag ctcaccgtac agcgaaaagt ctgctcgaga aggccatccg taccagcaag      3000
     cgccaacagt tccaagagct gatagacatt gccgagacca acgattacgg aaccggttat      3060
     agggtggtga tgtcccgact gcggggtagc cctgggccgc ctgaaacgga tcgcgccgaa      3120
     ctggagagga ttgtctctga cctgttcccc acgcacccac ccgtatcatg gcctgtctct      3180
     tcagatgctc caacgaccgt cccatcagac agcagagtag aaccgcaaga actactatct      3240
     attgctgccg ggatggtaac gaggaaggcc ccaggtttgg acgggattcc gaacgctgcg      3300
     gtgaaagtgg cgatagagga atacacggag gagttttgtc gcctgtacca ggactgtctc      3360
     tctcgcggca ccttcccgcc gcagtggaaa agacagcgac tggtactact cccgaagcct      3420
     ggcaaacccc caggagagag cagctcgtat cgaccgctgt gcatgcttga cgcacttgga      3480
     aaggtactgg agcggctcat tctcaatcgc ctgaatcgtc acatcgagca acaagactca      3540
     ccgcagctgt ctgatgccca gtatggattc cgccgaggac gttctaccat cagcgcgatc      3600
     cagcgtgttg ttgacgcggg cacagcggcc aagttgttcc gccgcacgaa cacccgcgat      3660
     aaacgctgcc tgatggtggt ggcactggac atccgcaatg cattcaacac tgccaactgg      3720
     caggcaatcg ccgacgcgct gcaaagtaag aatgtcccgt catacctgat gaagatcata      3780
     ggagcctact ttgaaggacg caagctgctg tttgacacta gcgaaggccc tgtcgaacgt      3840
     cacatcagcg caggagttcc acaggggtcc atactgggcc ctacactgtg gaatatgatg      3900
     tatgacgggg ttttcggagt tgggctgccg ctgggggcag agatcattgg ctatgctgat      3960
     gacctggtgc tattagtccc aggcacaact ccgacaacag cagcagcagc agcggaggaa      4020
     gcagtggcag cagtgaaaca gtggcttctc gagcaccgct tggaactggc tcattctaag      4080
     acggagatga cggtgatctc tagcctcaag cagcctccag aggaagtttt tatcactttc      4140
     ggcggagtga acgtgccgtt ctcgcgctcc ataaagtact tgggggtgcg tgtacatgcc      4200
     cacctatcat gggtacccca cgttaaggag ataactctga aggccacgcg gattgtgcac      4260
     gccgtcaatc gactcatgcc aaacctccat gggccaagga cctcgatgtc tcgcttgctg      4320
     gcaaatgtgg ccgactcgac catgcgctac gcagcacctg tatggcacga agcgattggc      4380
     aatcaagagt gctgcagatt acttcgtcgg gtgcaacgta agtcggcaat tggcttggcc      4440
     agaacgttcc gaacggttcg ttacgagact gcagtgttgc ttgcgggact cttgccgatc      4500
     tgcctggcaa tcaaggagga cacccgagtg cacagtcgcc gtggaacagg tttaaactgt      4560
     gcaatacgga gggaggagcg ccagcggtcc atggaagagt ggcaagcaac gtggggcgca      4620
     gacgccgcca acgaaagagc cagcagatac gtcagatggg cacaccgcgt aattccggac      4680
     gtgggatcct ggcagtcacg gaaacacgga gacgtcacgt tccacctatc ccaggttctt      4740
     tccggccacg gttttttccg ggagcacctg tgcggtatgc agctcacgtc gtccccggac      4800
     tgtacgcgat gccccggcgt tgcggagagc gcagaacatg ctatgtttga gtgtccgcga      4860
     ttcgactcga cccgaacaga gctgctgcac ggagtcgtcc cggaaacgct gcttgaacac      4920
     atgctccaga gcccagagaa ctggagtaat gtatgtgagg ccaccaagcg gataacatca      4980
     gcgctacagc aggattggga cgaaacccgg cgagagctgg ccgaacaagg cgccccacgt      5040
     gtggccgata atcaacataa tcaagataat gaccgcacct cgttgtacag tgcgaggaac      5100
     accagcgaag agcaacgggg tagacgtcac ccaacaccat cacctccacc cagagcggta      5160
     gggaggcggg cagaagtccg atctcttggg gagcgctatc gcaggcagct actggtagtt      5220
     gaagagcgtc ggcaaatatc cggccacagt gtcggtggag ttacctcgca ggaggatgga      5280
     acattggtcg aggcgtctcg acaaggcatg aacggtgcag aaaagactgc agcgactgag      5340
     gcagacgtgg catcacgcta gatgatgttg gtgatctgtg gaggatcttg ggaggaccaa      5400
     agtatggtca aaagggcgat ctccgcatcc tgagcggcag ggaggacaaa acgaatatga      5460
     aagggaaaga aggggggaaa taaacatgtg ttaggtgcct ggcgcacggg aaagagaggc      5520
     tccgaggagc agtaaaagcc ctccctcata gacccctcgc ggggcaagag ggaagggagt      5580
     gggcgaggac aggggatata atgtgtaaat caataagaac aataaaacct gtccgtgatc      5640
     taaaaaaaaa aaaaaaaaaa                                                  5660
//
ID   MINOS       repbase;    DNA;    INV; 1777 BP.
XX
AC   .
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   27-OCT-2020 (Rel. 25.11, Last updated, Version 2)
XX
DE   D.hydei minos transposon-like element encoding transposase.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposase;
KW   transposon; Tc1-like transposable element; MINOS.
XX
NM   MINOS.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-1777
RA   Franz G. and Savakis C.;
RT   "Minos, a new transposable element from Drosophila hydei, is a
RT   member of the Tc1-like family of transposons.";
RL   Nucleic Acids Res 19(23), 6646-6646 (1991).
XX
RN   [2]
RP   1-1777
RA   Savakis C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (27-AUG-1991). Charalambos
RL   Savakis, Institute of Molecular Biology and Biotechnology,
RL   FO.R.T.H., P.O. Box 1527, Heraklion, Crete, 711 10, Greece.
XX
RN   [3]
RP   1-1777
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (27-OCT-2020).
XX
DR   [3] (Consensus)
XX
CC   [3] replacec by consensus, 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(397..750,811..1479)
FT                 /product="MINOS_1p"
FT                 /translation="MVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKS
FT                 SVHGVIQIFKKNGNIENNIANRGRTSAITPRDKRQLAKIVKADRRQSLRNL
FT                 ASKWSQTIGKTVKREWTRQQLKSIGYGFYKAKEKPLLTLRQKKKRLQWARE
FT                 RMSWTQRQWDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFP
FT                 ASTMVWGCMSAKGLGKLHFIEGTVNAEKYINILQDSLLPSIPKLSDCGEFT
FT                 FQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRN
FT                 EPQRNISDLKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF"
XX
SQ   Sequence 1777 BP; 628 A; 301 C; 343 G; 505 T; 0 other;
     cgagccccaa ccactattaa ttcgaacagc atgttttttt tgcagtgcgc aatgtttaac        60
     acactatatt atcaatacta ctaaagataa cacataccaa tgcatttcgt ctcaaagaga       120
     attttattct cttcacgacg aaaaaaaaag ttttgctcta tttccaacaa caacaaaaat       180
     atgagtaatt tattcaaacg gtttgcttaa gagataagaa aaaagtgacc actattaatt       240
     cgaacgcggc gtaagcttac cttaatctca agaagagcaa aacaaaagca actaatgtaa       300
     cggaatcatt atctagttat gatctgcaaa taatgtcaca atacagcatg caaaaaaatt       360
     ttagaattgc tgcagatcag tagaagttta gcaacgatgg ttcgtggtaa acctatttct       420
     aaagaaatca gagtattgat tagggattat tttaaatctg gaaagacact tacggagata       480
     agcaagcaat taaatttgcc taagtcgtct gtgcatgggg tgatacaaat tttcaaaaaa       540
     aatgggaata ttgaaaataa cattgcgaat agaggccgaa catcagcaat aacaccccgc       600
     gacaaaagac aactggccaa aattgttaag gctgatcgtc gccaatcttt gagaaatttg       660
     gcttctaagt ggtcgcagac aattggcaaa actgtcaagc gagagtggac gcgacagcaa       720
     ttaaaaagta ttggatatgg tttttataaa gtatgttttg ttattacctg tgcatcgtac       780
     ccaataactt actcgtaatc ttactcgtag gccaaggaaa aacccttgct tacgcttcgt       840
     caaaaaaaga agcgtttgca atgggctcgg gaaaggatgt cttggactca aaggcaatgg       900
     gataccatca tattcagcga tgaagctaaa tttgatgtta gtgtcggcga tacgagaaaa       960
     cgcgtcatcc gtaagaggtc agaaacatac cataaagact gccttaaaag aacaacaaag      1020
     tttcctgcga gcactatggt atggggatgt atgtctgcca aaggattagg aaaacttcat      1080
     ttcattgaag ggacagttaa tgctgaaaaa tatattaata ttttacaaga tagtttgttg      1140
     ccatcaatac caaaactatc agattgcggt gaattcactt ttcagcagga cggagcatca      1200
     tcgcacacag ccaagcgaac caaaaattgg ctgcaatata atcaaatgga ggttttagat      1260
     tggccatcaa atagtccaga tctaagccca attgaaaata tttggtggct aatgaaaaac      1320
     cagcttcgaa atgagccaca aaggaatatt tctgacttga aaatcaagtt gcaagagatg      1380
     tgggactcaa tttctcaaga gcattgcaaa aatttgttaa gctcaatgcc aaaacgagtt      1440
     aaatgcgtaa tgcaggccaa gggcgacgtt acacaattct aatattaatt aaattattgt      1500
     tttaagtatg atagtaaatc acattacgcc gcgttcgaat taatagtggt cacttttttc      1560
     ttatctctta agcaaaccgt ttgaataaat tactcatatt tttgttgttg ttggaaatag      1620
     agcaaaactt tttttttcgt cgtgaagaga ataaaattct ctttgagacg aaatgcattg      1680
     gtatgtgtta tctttagtag tattgataat atagtgtgtt aaacattgcg cactgcaaaa      1740
     aaaacatgct gttcgaatta atagtggttg gggctcg                               1777
//
ID   MITE_AA     repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Aedes aegypti MITE repeat - consensus sequence.
XX
KW   MITE; MITE_AA; miniature inverted-repeat transposable element.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Tu Z.;
RT   "Molecular and evolutionary analysis of two divergent subfamilies
RT   of a novel miniature inverted repeat transposable element in the
RT   yellow fever mosquito, Aedes aegypti.";
RL   Mol. Biol. Evol 17(9), 1313-1325 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Aedes aegypti MITE repeat - consensus sequence.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 521 BP; 172 A; 91 C; 85 G; 173 T; 0 other;
     taccgttttg actcatattc cgaacactta aggccaacag tgacttcaaa tgcatctgat        60
     aggcataaat tagctgatat ttgtgtaaat tttaatttct tcgcaaagtc taactgttag       120
     ctgttgggtg taccaataaa aatgttgatt taattagttt tagtattgtt tttacgtaaa       180
     agtatggaac aacattttga ttcaaatgcc gaacactgtg ttcattctgt ctcatattcc       240
     gaacaccttg attcaaattc cgaacagcac gaataaatcg tattcaaatg aataatttcg       300
     caaataaatt tatctgagct tgttctactg gtctcaaact agagaatcat cactactccc       360
     gaggtataaa atatattgga agacgttaaa attgaattgc aattgactgc catttccttg       420
     ttatttgatg acatatttca gcgaaacatt tcaaccaaat cgccatacaa aaaccgagtg       480
     ttcggaatat gagtctgttc ggaatttgag acaaaacggt a                           521
//
ID   MosquI_Aa2  repbase;    DNA;    INV; 7202 BP.
XX
AC   AF134900;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   06-OCT-2010 (Rel. 15.11, Last updated, Version 4)
XX
DE   Aedes aegypti non-LTR retrotransposon MosquI-Aa2, complete
DE   sequence.
XX
KW   I; Non-LTR Retrotransposon; Transposable Element; endonuclease;
KW   reverse transciptase; gag domain; pol domain; Mosqul_Aa2;
KW   MosquI_Aa2.
XX
NM   Mosqul_Aa2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Tu Z. and Hill J.J.;
RT   "MosquI, a novel family of mosquito retrotransposons distantly
RT   related to the Drosophila I factors, may consist of elements of
RT   more than one origin.";
RL   Mol. Biol. Evol 16(12), 1675-1686 (1999).
XX
DR   Genbank; AF134900; Positions       1    7202.
XX
CC   Related to Drosophila I factors. Contains putative
CC   transcription initiator, and putative downstream promoter.
XX
SQ   Sequence 7202 BP; 2099 A; 1856 C; 1503 G; 1744 T; 0 other;
     tattgaggta agttttttct aaatgaaaat ttgcgtatgg tattattcca actctaccaa        60
     cggctagtca tcgaacccag actgttataa accaaccatt tttttccaat acatgtggtc       120
     gactttttcc cttcaaattt tgacctattt ttggaagcac ttctcgacaa caagagttga       180
     atttttcaat taggttcaat tgaattaggt accctaacta tagttcaaag tcgaacagtt       240
     cgacagctca tgtcatagcg agcagacgcg tgtatgctat cgctcccgcg tttctaactt       300
     cgcttcgacc gtttcagcaa acagtgcatt atctcaattt gactacctcg tcggacctgg       360
     ccaggcccag gagtataata gaaaacatcg aagtaggccg gccagtaagt ggccgaaagt       420
     gcgaaatctg gtgccaaact accagtgccg ggaccgtgat ataaagcgtt cttgactgaa       480
     tagaacaaaa aaagcttttc tctttgttct tgctcagacg aacaaccgct tagtgagtgg       540
     catctcgtgc tgtgcggttc gttttgccta ttgtttgtga agaatatctc cgcaatagtt       600
     caaattaatt agtgcttgct gctgcccccc tcgacatgcc gccggggcta gaccccttcc       660
     ccctagggga ccctggcccg tctaattgtc gtgatggtga attcgctggc cctcgttttc       720
     ctgaatgggg agaccctcaa ggcaattacg gtcaactggt aatgatgcga atggaagccg       780
     tctcggggaa tcttccacag gctcctttcc ttctccgaaa atcggtggag agctatctgg       840
     gagcgaaggt tgatggagca tatcccgaaa aaggaggtac aacgtatgtt ctgaagctga       900
     ggaacaaaaa tcacgctgaa aagctgaaaa ggatgtcaaa attgactgat ggcttcccga       960
     tcaagatcgt ggagcatcca gtactaaacg tgtcaaaatg tgttatcagc tgcagcgata      1020
     cgtgtgtcta ttctgatacg gagctggtag aggaattgaa agatcaaggc gttaaggaag      1080
     tacgaagaat caccaggcgt gacggaaacc agcgaatcaa cactccaacc atcatattga      1140
     cactccaagg taccgtcatc ccagaggaca tctatattgg atggatcaga tgccgcaccc      1200
     gtccattcta tcccacgcct atgctgtgtt attgctgttg ggatttcgga cacacgcgag      1260
     ctcgttgtca gcatcagaac aaccctacat gcggtaactg ctctggtaag caccaaacag      1320
     acgtggaaaa cccatgcctt ctcgcggcgt tctgcaaacg gtgcaatacc aatgaccatc      1380
     cactctcgag ccgaaaatgt cccacctatg tcaaagaaaa cgaaatccaa cacctacggg      1440
     tcgatttagg catttcctat ccagcagcaa aacggcagta tgagcagaga cacggttcaa      1500
     aatccatggc atccatcgta gcagatagta acgatcggcg ttatgccgaa ctttcggcga      1560
     aactcgataa cgtcctaaag gtagtaaaaa gcaaggacgc tgagatcgag actctactta      1620
     ccgaactaaa aaacaaagac gcacacatcg agaaactgga atccactatg aagctcacac      1680
     cccaagaacg gctgaataca gtgaaagaac acggcactat caaggacctt gttaacaaga      1740
     tccactctct ggagtcagag ctagctagga aagacagaga agtcgctatg atccgtgaaa      1800
     tctacatccc caagaaatcc tcaaccagca ctggtaacaa aattaccaag cccgacgtat      1860
     caaacgggtg taatacggga cacgatgatc gcaattcttc acacactaat cagtctgagg      1920
     catcgcaaat caagaaaaca ggcaagaaaa agaaagctaa caaaaccgac agctacgaga      1980
     ggcttaacaa acgtaccaaa aatcgccttt cgccaagcac aactcccgaa tgtacattta      2040
     caccggaaac ctcacctgct gacatcgaaa tttcttcggg tgatgaacca atgttgaatg      2100
     tatccgggta catatccgac tcctaaacgt cacatcacgc atctagtccc ctcctgaact      2160
     tatgtttctt gcctgaactg atcaacaaaa ttaacactgc acttcacctc tcaacaaacc      2220
     gctaccgaaa ctgattcaaa aaaggagcgg actagccaag caacagcgac ttacagaaaa      2280
     cacatcccat catcgaagcg caaaccaact ccaattgcat ctatcaacga tctggcaacc      2340
     tttactggcc aatgcgacta cccggcggag ccaccgagca gtcgaggcac cgccagtgcg      2400
     gacgtatatg ccacaccgga actgacggac aaccctcgac actccgtggc agtcggaaga      2460
     gggacggaca agggagacaa ctcccatccc cctgaggaca acgagggatt taattcacaa      2520
     ccaatacaaa ctaagcaaca aaaatccacg ccggagatgt acttggaacg acagtcttgc      2580
     atcggtgaag ctctatcgac gttaagattt cgaacacaac ctcgaattag tcctgaagat      2640
     tcccgttggc caacgctgcc tcaaagtata aggtccaacg cagcgctgta tgattcatac      2700
     caattcaaac atagagggac ctctattcca aaagcaggct cttctggttg gtgtcttccc      2760
     attgtagagt acactggtga tgactgcagt gccccaagtc gacgcgagat cacagaaaca      2820
     gtatttctta gtagaccacc caccccaagc acaagatcac tgtcagaaca accaactctc      2880
     cgccatccac gaaatatatc cagtatgccc tcggttagca ccttgttcgc catacaatgg      2940
     aacatgaatg gcaatatcaa caatctgccg gaccttgagc ttcttgtcag agaccagcaa      3000
     ccaatcatat tggccattca agagacgcat cggattaata ccaaccggtt gaaccattcc      3060
     ttacagaaac ggtacagctg gaccctcaaa tgtaatgaaa acatctacca ctcggctgct      3120
     attggagttt taccaactgt tcctttttct ccgcttcctc tcaacacgga cttaccaatt      3180
     gtggcagtta aacttgagta tccgtttcct atgaccgtga tatcgggata cctgccaaat      3240
     gggaacattc cggatctcaa acttcgcctc tttaatgctc ttcagagtct aagtagccca      3300
     atactagtta tgtgggacgt gaacggtcat catccggaat ggggcagtgt ttcacctaac      3360
     gataggggtt cactcattat ggacgtagca gaaaagcttg acctagttat tctcaatgat      3420
     ggagccacta ccttcaccag aggccaacgg aattccgcaa tagatgtcag tttatgcagt      3480
     ccaagcatag tcaaccgact cctctggact gccaaagagg atcccatggg tagtgaccac      3540
     catcccatct tcatacacat cgacgaacaa cctcaagcta cttctcgtcg tccgcgctgg      3600
     aaatatgacc aagcagattg gtctcacttt caaacgctga ttgacaccga agtttctgac      3660
     aaacccccgg ataacatcga aggtttcctt agtgttttgc atcaagctgc ctctacatct      3720
     attcctcgca ctacaccaaa cccaggtcgg agatcattgc catggtggtc tccagacata      3780
     aaaaaagtca tcaaagagag acgaaaggcc ctccgtgccg caaagcgtct ggctgatgac      3840
     catccagaaa aatcaaaatt aacggaaatc taccgctcca aacgcaacga atgtcgccag      3900
     cgtattcgag atgctaagaa aaaaacatgg gaagacttct tggaaggaat caatgctaac      3960
     caaacggcat ccgaattgtg gaatcgagtc aacgcattga atggcaaacg acgagcaact      4020
     ggcatgacac tacggttacc aggaggccta actcgagacc cactcttaat agcaaacgct      4080
     ctagctgatc acttcgcttc tctatcctct ttagaccgat atggtagaaa ttttatctta      4140
     aagaatcaag cttctatcga tagcataacc aatctagtta tcccagaaga taacacacct      4200
     ctccgcataa actctccttt ccgtatggaa gaactaaact ttgccctacg ccattgcaaa      4260
     agtaagtctg caggtccaga tgacctcgga tacccattgt ttcagcacct ttcaatagtt      4320
     tcgaaggcaa cccttcttga tctgctgaac aaaacatgga tcgagaatac tctaccgaag      4380
     tcctggacac acagcctagt tgttccaata cctaaacacg gaaaagccgc cacttcccct      4440
     ggtgacttta gaccgatctc actaacatgt tgcgccagta aaatacttga acgtatggta      4500
     aatcgacggt tgatccgttt cctggaagat aatcagtttc tcgaccatcg gcaacacgct      4560
     ttccgtcctg gtcacggagc agagacatat ttcaccggtc tgggtgacgt ccttcaagac      4620
     gcgatgggca aaggtttaca tgctgacatg gcctcattgg atctcgctaa ggcctacaac      4680
     cgcgcgtgga cacctcacgc tattcgtcgg cttgctgatt ggggcctgtg tggacacatt      4740
     ctccattttc ttaaaaactt cctgaaaggc agaacattcc aagttattat cggcaacaac      4800
     cactcctcaa tccgtgcgga agaaactggg gttccgcagg gatctgttat agcggttact      4860
     atcttccttg ttttgatgaa caacattttc gaagcattgc cgaaagaaat ctacattttc      4920
     gtctacgcgg acgatatact cttagttgtc atcggccgta ccctaaaatt catcagacga      4980
     aaactacagg cagcagtatc tgcggtagcc agatgggctg ctaactccgg ttttgacctc      5040
     tcggcggaga aaagtgttat ctctcatgta tgccgctccc gtcatcgtgt tcttcaaact      5100
     cccgttatgg taaacggctg cccgattcca tgtaggaaaa caatggttat acttggagtg      5160
     cagcttgacc gtgaactacg tttcgatgct cacctaaatg cgatcaagag gaactaccaa      5220
     acaagaatca atcttctccg caccttatcc aaaccgcata agagcagtaa cagagacatc      5280
     cttgtaagaa tagcaaaatc tataatcaac agccggctct tttatggtat tgaactcttc      5340
     ggtctggcag gtgacacttt aatcacacgc cttgccccta catataatca atccattaga      5400
     ataatagctg gcttactccc atccactcca gcagatgcgg cctgtgtgga acttggagtt      5460
     ctcccattcc gataccaagc tacagaaact ttgtgctgtc gaacgatcgc ctatttagaa      5520
     aagaccactg gagatcatga ggtctttctc ctcagggagg ggaacagagc tctagacagt      5580
     ttggcccatc aggagctccc cccggttgaa caggtccact gggtcggagc cagaaggtgg      5640
     gacgctccag atttcctcgt agacacctcg gtttcgaaac gatttcgagc aggggataac      5700
     tctcctgcta tgcgttctca tgtcacggag ttgttagcta gcaagtaccg aaactaccat      5760
     caccgtttca ccgatggctc caagtatttg gacagaactg gcttcggcgt taccgacatt      5820
     gataaaagct atttttatag actacccgat cagtgctcgg ttttctcggc cgaggctgct      5880
     gcaattcttc tggcctctac aactcctgca cccaaaccaa tatgtgttat ctccgactct      5940
     gctagcgtac tcgctaccat caactcatcg tcaactcgtc acccatggat ccaagctgtg      6000
     cagaagaact cgccctctca aaccgttttt ctatgggtac ccggtcattg cggcattcga      6060
     ggcaatgtgg aggctgacca tcttgcatcg aaaggtcgat ccggtcgtct gttcaccaga      6120
     ttaacgccag ggatggattt gaaaaactgg accaaatctc aaatccgttc atcttgggcc      6180
     ctagaatggg tgaatttaag agataagttc atacgaaaaa tcaaaggaga aacaaaacgc      6240
     tggattgata ctaacaatcg tcgtgaccaa caagtgttat ctcgtctgcg taccggtcac      6300
     acccacgcta ctcacaatat gggtaacgaa cggccgtttc gcaaaaagtg cattgtctgc      6360
     aacactacga tgtctgtcga acacatgata atcaattgtc cttgctttca agcccctcga      6420
     gaacgccaca atatcccaga tagcatcaga gatgcgcttt cgaatgaagc ttccagcgaa      6480
     gcagcaataa tatctttttt caaggatgcg ggactttaca acaaaatttg acaaatgtta      6540
     tcacaacaag attcaaaact attgaacgat atacgatgac catgctgaca cactctgaca      6600
     atggatttgg accaatgaag gactttctaa acgatactcg atgacgacta tgctgacccg      6660
     gaatggctac caaattggac taccgaatgg acttcgacgc ttgaaatatt taaatctata      6720
     atctgccaaa tgtgtacatt aactttgttt gacagggggg cctctcaata cgaagccctc      6780
     tttttcccaa cgatggagac gaaccagcct ccggctgaaa gtctcgataa taaagataat      6840
     aataataata ataatagttc aaagttgcta aatattattt ttgtgatgaa taaacatgga      6900
     tggatgttgg accgttctaa taatcatgta ccatttcagg aaataagcac ccagctgggc      6960
     cagaattggg tcccactgga tgccaaaacc ctcccgcctg ccctcggatt ctacccggta      7020
     tcggatgacg ttcgtgacca atatatcctc cggtacattc gcaacggcgt tgctgcttaa      7080
     gcttcccggt aagtactaca tgctccaaac catttcaatg tcctatattg aatgtttccg      7140
     ttcaatgtgc gtaaggttca cggtgaccgc ttcaaacagg cacggaatca agatccgaat      7200
     tc                                                                     7202
//
ID   MSAT-1_AAe  repbase;    DNA;    INV; 560 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Minisatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-560
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1447-1447 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 560 BP; 192 A; 108 C; 131 G; 129 T; 0 other;
     gaaggaactt ctagaacaat tcctaaagga actcctggaa aaattcctga aagaacccct        60
     gcagaaattc ctgagaaata cctgaagaaa ctccagtaga aattcctgaa gctactacgg       120
     gaggaattcc tgaaaataac cctgaaggaa ttcccgaagg aactcctgca ggaatatttg       180
     gagtaaaatt tgaaggaact cctggaggaa tttccgaaca acctccagac ggaattcctg       240
     aaagaactcc tggaaaaaat cctgaagaat tcctggagga atccctagga aacttccgga       300
     ggaattcccg aagggtttcc tacaggaagt cttggaggaa ttcctgaagg aactccctga       360
     tggaatacgt gtaggatgtc ctgaagtaaa tcatcgaaga tttcctgaaa gatttcctgg       420
     agtaaatcct gaaggaactc ctggaaaaat tcttgaagga aatcatggat gaattcctgg       480
     aggaattgtt gaaggaaacc ctggaggatt tcctgaaaga tctcctggag gaattcctga       540
     aggaacttct ggaagtatat                                                   560
//
ID   MSAT-1_CQ   repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   Minisatellite-type sequence from the southern house mosquito:
DE   consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-174
RA   Jurka J.;
RT   "Tandemly repeated DNA from the southern house mosquito.";
RL   Repbase Reports 11(1), 629-629 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 174 BP; 40 A; 65 C; 27 G; 42 T; 0 other;
     ccgaacttct tttcaatgat tccagaatct tccaccactt tctcgcggat tctcgcgcgc        60
     gacgtcacac accgatcccc ccgacgaaca ccacacgact aatggcccaa cttccaaggc       120
     ctcgacgcga acttcttttc aatgattcca gaatcttcca ccactttctc gcgg             174
//
ID   MSAT-1_DBp  repbase;    DNA;    INV; 143 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 17.05, Created)
DT   14-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Minisatellite from the Drosophila bipectinata genome: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-143
RA   Kojima K.K. and Jurka J.;
RT   "Satellites from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 734-734 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 143 BP; 26 A; 43 C; 52 G; 22 T; 0 other;
     ggggaatcgg ctgggcactc cacgcctcgg catggggatc gaccgggcac tccaggcctt        60
     ggcagggaga tcggccaggc acttcacgta ttggcgggtt atcagctggc aggggaatcg       120
     gccaagcact ccacgcgtcg gca                                               143
//
ID   MSAT-1_DW   repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 17.09, Created)
DT   24-SEP-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   Minisatellite: consensus,.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-262
RA   Jurka J.;
RT   "Simple repeats from fruit fly.";
RL   Repbase Reports 12(9), 1993-1993 (2012).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 262 BP; 77 A; 42 C; 47 G; 96 T; 0 other;
     actttttcag aaatgtcatc gatgactttc tgagaaatgt catcgatgac tttatgagaa        60
     atgtcatgga tgactttttc agaaatgtca tcgatgactt tttcagaaat gtcatggatg       120
     actttttcag aaatgtcatc gatgactttc tcagaatgtc atcgatgact ttttcagaaa       180
     tgtcatcgat gactttttca gaaatgtcat cgatgacttt ttcagaaatg tcatcgatga       240
     ctttttcaga aatgtcatcg at                                                262
//
ID   MSAT-1_RPr  repbase;    DNA;    INV; 169 BP.
XX
AC   .
XX
DT   21-JUL-2012 (Rel. 20.10, Created)
DT   21-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-169
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3508-3508 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 169 BP; 49 A; 23 C; 29 G; 68 T; 0 other;
     tttgggtcat gaaattctgt aaaattatgg ccgttctata tctcccactg tgaaccacgt        60
     attggtatgg aattttgttc tcttgtacac tttgtttttc tcaattataa actatagtta       120
     ttttgtgcac agatctataa atgtagaaga tataaagggt tgaaaattt                   169
//
ID   MSAT-2_AAe  repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Minisatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-276
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1448-1448 (2011).
XX
DR   [1] (Consensus)
XX
CC   23-bp unit.
XX
SQ   Sequence 276 BP; 72 A; 60 C; 60 G; 84 T; 0 other;
     tctcaggatt ctgagagaat ccttctcagg attctgagag aatccttctc aggattctga        60
     gagaatcctt ctcaggattc tgagagaatc cttctcagga ttctgagaga atccttctca       120
     ggattctgag agaatccttc tcaggattct gagagaatcc ttctcaggat tctgagagaa       180
     tccttctcag gattctgaga gaatccttct caggattctg agagaatcct tctcaggatt       240
     ctgagagaat ccttctcagg attctgagag aatcct                                 276
//
ID   MSAT-2_CQ   repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-142
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 614-614 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity.
XX
SQ   Sequence 142 BP; 37 A; 39 C; 32 G; 34 T; 0 other;
     cgacgtatca aacttcatga aattgaaagt tatgaccatc tgaggtcatg ccgatgtcct        60
     ctgacccatc ctggtcactc cggaaccggt taccggtggc cactggggga cactatcgga       120
     atatgcaatg aaccctatca tc                                                142
//
ID   MSAT-2_RPr  repbase;    DNA;    INV; 821 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-821
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3509-3509 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 821 BP; 243 A; 190 C; 94 G; 294 T; 0 other;
     tacatacata catattttca tacatagcac acatattgat tagtcgtaca ctgctttcct        60
     tggcggctct ttttactttc ccgccatttc ttttccagag ttttggttcc tgccaaactt       120
     ctgtagcctg gtattctata actttcgctt tgattccatt tctgttcttt ccaggctaca       180
     gtgcatctcg ttctttggcc agaaaaaaga gcaacaactg ccttcctgta tccattacat       240
     taaacatact tctattcagc aacagttttt ctccaacttc atctgcaggg ttgtctggat       300
     gtatattctt gccctcttta tggccctggc ccttcaggcc ttgaccccac ttggtgtcca       360
     accttgtcga ggtggtgggg cttacgcact aagggcacta gagattaacc ctctctaaaa       420
     ctctcgcgtt ttcctcttct gggtgtgggt gccttcgctc gcttacacat ataaacatat       480
     ttactgagaa acataactta catatttatg taactacata tatttaatac atatttacac       540
     atgtagatac attacataca tacatatata tgtaaatact tacatacata tacacataca       600
     tacatatttt ctttcataca ttaattacat ccatacatac atataaattt acatacatag       660
     ttctatacgt acattacata catatttaga tacatatata tttacataca tacacattta       720
     catacatcat acattacata catatttaca tacatacatt ctttcatcaa tgccatacat       780
     atatacatat tttcgtacat acataacata acaaacatat t                           821
//
ID   MSAT-3_AAe  repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   11-APR-2011 (Rel. 16.04, Created)
DT   11-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Minisatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-276
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1449-1449 (2011).
XX
DR   [1] (Consensus)
XX
CC   23-bp unit.
XX
SQ   Sequence 276 BP; 84 A; 60 C; 60 G; 72 T; 0 other;
     acagaatctc gtctagagat tcgacagaat ctcgtctaga gattcgacag aatctcgtct        60
     agagattcga cagaatctcg tctagagatt cgacagaatc tcgtctagag attcgacaga       120
     atctcgtcta gagattcgac agaatctcgt ctagagattc gacagaatct cgtctagaga       180
     ttcgacagaa tctcgtctag agattcgaca gaatctcgtc tagagattcg acagaatctc       240
     gtctagagat tcgacagaat ctcgtctaga gattcg                                 276
//
ID   MSAT-3_AG   repbase;    DNA;    INV; 252 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   22-MAR-2011 (Rel. 21.07, Last updated, Version -1)
XX
DE   Minisatellite - a consensus sequence.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-252
RA   Jurka J.;
RT   "Minisatellites from African malaria mosquito.";
RL   Repbase Reports 16(7), 1453-1453 (2016).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 252 BP; 44 A; 83 C; 80 G; 45 T; 0 other;
     ttccgattcc ggagccgatt ccgattccgg agccgattcc ggagccgatt ccggagccga        60
     ttccggagcc gattccggaa tcgattccgg agccgattcc ggagccgatt ccggagccga       120
     ttccggaacc gattccggag ccgattccgg agccgattcc ggagccgatt ccggagccga       180
     ttccggagcc gattccggag ccgattccgg agccgattcc ggagccgatt ccggagccga       240
     ttccggagcc ga                                                           252
//
ID   MSAT-3_CQ   repbase;    DNA;    INV; 49 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-49
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 615-615 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >89%
CC   identity.
XX
SQ   Sequence 49 BP; 12 A; 7 C; 15 G; 15 T; 0 other;
     tgtccctgta gttgaacagg tggtgaacat gtagttgttc acgggtaaa                    49
//
ID   MSAT-3_RPr  repbase;    DNA;    INV; 346 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-346
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3510-3510 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 173-bp long.
XX
SQ   Sequence 346 BP; 114 A; 58 C; 48 G; 126 T; 0 other;
     gtgctatagt ataggagata tatcaagttg aagttttctc atgttagttc tttcaaaaac        60
     tccaaaactt tcaatcctaa tattgggttt tctacagttc cgaattacaa gggattttgc       120
     acaattgtag atcccatata tctccacatt tgagtaaaat atcaataatt tcagtgctat       180
     agtataggag atatatcaag ttgaagtttt ctcatgttag ttctttcaaa aactccaaaa       240
     ctttcaatcc taatattggg ttttctacag ttccgaatta caagggattt tgcacaattg       300
     tagatcccat atatctccac atttgagtaa aatatcaata atttca                      346
//
ID   MSAT-4_AAe  repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Minisatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-176
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1450-1450 (2011).
XX
DR   [1] (Consensus)
XX
CC   22-bp unit.
XX
SQ   Sequence 176 BP; 64 A; 24 C; 40 G; 48 T; 0 other;
     tggaatcttc caataggaag attggaatct tccaatagga agattggaat cttccaatag        60
     gaagattgga atcttccaat aggaagattg gaatcttcca ataggaagat tggaatcttc       120
     caataggaag attggaatct tccaatagga agattggaat cttccaatag gaagat           176
//
ID   MSAT-4_CQ   repbase;    DNA;    INV; 163 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-163
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 616-616 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 20 sequences with >95%
CC   identity.
XX
SQ   Sequence 163 BP; 57 A; 23 C; 18 G; 65 T; 0 other;
     caaaactacg taaaatacag aaaatttgat actttccttt agaactttat ttgcttcatg        60
     gtaaaatcat tgatttattt tatgaaaatg tttcaaatga tctaaattat aagtttccga       120
     atcattctga gtgtgtttct tcctgaatac tacaaaattt tac                         163
//
ID   MSAT-4_RPr  repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-399
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3511-3511 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 133-bp long.
XX
SQ   Sequence 399 BP; 123 A; 72 C; 75 G; 129 T; 0 other;
     gaaaaatacc gaattggctt ccagttcgtc tagatttcta ctttttctgt ctctgtcacc        60
     tacttttatg gccagggcta aaataaacat aaagggttgc cttcttttgg aaaatgaaag       120
     gtaaaataca agggaaaaat accgaattgg cttccagttc gtctagattt ctactttttc       180
     tgtctctgtc acctactttt atggccaggg ctaaaataaa cataaagggt tgccttcttt       240
     tggaaaatga aaggtaaaat acaagggaaa aataccgaat tggcttccag ttcgtctaga       300
     tttctacttt ttctgtctct gtcacctact tttatggcca gggctaaaat aaacataaag       360
     ggttgccttc ttttggaaaa tgaaaggtaa aatacaagg                              399
//
ID   MSAT-5_AAe  repbase;    DNA;    INV; 276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Minisatellite-type sequence: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-276
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1451-1451 (2011).
XX
DR   [1] (Consensus)
XX
CC   22-bp unit.
XX
SQ   Sequence 276 BP; 72 A; 60 C; 84 G; 60 T; 0 other;
     caggatttcg gaggaaatcc tcgcaggatt tcggaggaaa tcctcgcagg atttcggagg        60
     aaatcctcgc aggatttcgg aggaaatcct cgcaggattt cggaggaaat cctcgcagga       120
     tttcggagga aatcctcgca ggatttcgga ggaaatcctc gcaggatttc ggaggaaatc       180
     ctcgcaggat ttcggaggaa atcctcgcag gatttcggag gaaatcctcg caggatttcg       240
     gaggaaatcc tcgcaggatt tcggaggaaa tcctcg                                 276
//
ID   MSAT-5_CQ   repbase;    DNA;    INV; 154 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-154
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 617-617 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 28 sequences with >93%
CC   identity.
XX
SQ   Sequence 154 BP; 46 A; 41 C; 26 G; 41 T; 0 other;
     caatatgggt atcaaaattc ttcattttgt caacacatct caaaaatggt cttccaaaat        60
     atttttctgg ccactggcca ctccggaacc ggttccggat atccccccgg ggaaatcttc       120
     gaagtggcca atatcatatc agaacaaagc ccat                                   154
//
ID   MSAT-5_RPr  repbase;    DNA;    INV; 393 BP.
XX
AC   .
XX
DT   30-JUL-2012 (Rel. 20.10, Created)
DT   30-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-393
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3512-3512 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 131-bp long.
XX
SQ   Sequence 393 BP; 123 A; 57 C; 72 G; 141 T; 0 other;
     gaaaaataca aaatcttcat tagttttgct ggaatttcca taatttctgt ttctaacatt        60
     gtactttaat gccaagcgta tattatacac attaggtcgg ctggttttgg atgcagtagt       120
     tcagaaaaag ggaaaaatac aaaatcttca ttagttttgc tggaatttcc ataatttctg       180
     tttctaacat tgtactttaa tgccaagcgt atattataca cattaggtcg gctggttttg       240
     gatgcagtag ttcagaaaaa gggaaaaata caaaatcttc attagttttg ctggaatttc       300
     cataatttct gtttctaaca ttgtacttta atgccaagcg tatattatac acattaggtc       360
     ggctggtttt ggatgcagta gttcagaaaa agg                                    393
//
ID   MSAT-6_CQ   repbase;    DNA;    INV; 140 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-140
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 618-618 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity.
XX
SQ   Sequence 140 BP; 39 A; 38 C; 29 G; 34 T; 0 other;
     ttttcattac cagtatcgaa aaccaagaag tttgataccc atattgccca aaatcgtatg        60
     gttcgtaaat gtcctcccgg gagaacctcc ctgagggcac cggccactcc aggttgtggc       120
     caatactgtc aaaatggcca                                                   140
//
ID   MSAT-6_RPr  repbase;    DNA;    INV; 1952 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1952
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3513-3513 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 976-bp long.
XX
SQ   Sequence 1952 BP; 688 A; 306 C; 264 G; 694 T; 0 other;
     gtttttgcat aatttcattc tttattaaat acctatggag gaaaaaatag tgaaaaaatt        60
     ctagagtaca tttttgatac gaataaaagg cctaaaaagt cttaatggtg gaacgtagaa       120
     gtggtatgtg ggcgtgtagt ttacccccac ctacctacgg ttctattggc cagtatacac       180
     gcccacaaga cgcttgttcg atccgccatt aggattttta atgcttattt tctctattaa       240
     aacaatagtt tagaattttt tcactatttt ttcctccgta ggtatttcat aaagaatcaa       300
     tttatgcaat aaaaattttc actacaaaaa ttaatgtaat ttttaactta actgttttat       360
     tccgacaaaa ttcttcaatc aaatcaaaat taggcacatc ataattgaaa taaaacatat       420
     tctgcaatca ttcataaacc gtagttgatg gtgaaacgta aaataaatct tcaaaataat       480
     ttatttttgt ttttgcataa tttcattctt tattaaatac ctatggagga aaaaatagtg       540
     aaaaaattct agagtacatt tttgatacga ataaaaggcc taaaaagtct taatggtgga       600
     acgtagaagt ggtatgtggg cgtgtagttt acccccacct acctacggtt ctattggcca       660
     gtatacacgc ccactagacg cttgttcgat ccgccattag gatttttaat gcttattatc       720
     tctattaaaa caatagttta gaattttttc actatttttt cctccgtagg tatttcataa       780
     agaatcaatt tatgcaataa aaatttttac tacaaaaatt aatgtaattt ttaacttaac       840
     tgttttattc cgacaaaatt cttcaatcaa atcaaaatta ggcacatcat aattgaaata       900
     aaacatattc tgcaatcatt cataaaccgt agttgatggt gaaacgtaaa ataaatcttc       960
     aaaataattt atttttgttt ttgcataatt tcattcttta ttaaatacct atggaggaaa      1020
     aaatagtgaa aaaattctag agtacatttt tgatacgaat aaaaggccta aaaagtctta      1080
     atggtggaac gtagaagtgg tatgtgggcg tgtagtttac ccccacctac ctacggttct      1140
     attggccagt atacacgccc acaagacgct tgttcgatcc gccattagga tttttaatgc      1200
     ttattttctc tattaaaaca atagtttaga attttttcac tattttttcc tccgtaggta      1260
     tttcataaag aatcaattta tgcaataaaa attttcacta caaaaattaa tgtaattttt      1320
     aacttaactg ttttattccg acaaaattct tcaatcaaat caaaattagg cacatcataa      1380
     ttgaaataaa acatattctg caatcattca taaaccgtag ttgatggtga aacgtaaaat      1440
     aaatcttcaa aataatttat ttttgttttt gcataatttc attctttatt aaatacctat      1500
     ggaggaaaaa atagtgaaaa aattctagag tacatttttg atacgaataa aaggcctaaa      1560
     aagtcttaat ggtggaacgt agaagtggta tgtgggcgtg tagtttaccc ccacctacct      1620
     acggttctat tggccagtat acacgcccac tagacgcttg ttcgatccgc cattaggatt      1680
     tttaatgctt attatctcta ttaaaacaat agtttagaat tttttcacta ttttttcctc      1740
     cgtaggtatt tcataaagaa tcaatttatg caataaaaat ttttactaca aaaattaatg      1800
     taatttttaa cttaactgtt ttattccgac aaaattcttc aatcaaatca aaattaggca      1860
     catcataatt gaaataaaac atattctgca atcattcata aaccgtagtt gatggtgaaa      1920
     cgtaaaataa atcttcaaaa taatttattt tt                                    1952
//
ID   MSAT-7_CQ   repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A satellite repetitive sequence family from Culex
DE   quinquefasciatus - consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "Satellite sequences from the southern house mosquito.";
RL   Repbase Reports 11(1), 619-619 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity.
XX
SQ   Sequence 184 BP; 67 A; 29 C; 23 G; 65 T; 0 other;
     acatttatta agaaattcca acaaattcct taagaaaatt gcaattttaa taaaatttca        60
     aataaaagca gccctgctga caatctgtgg ctcattcaat gattggagaa tgttgttctg       120
     atgtctaaga atgatattca gtcattctac caaattctac ctcattgtaa aattgttttt       180
     aaat                                                                    184
//
ID   MSAT-7_RPr  repbase;    DNA;    INV; 405 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-405
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3514-3514 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 135-bp long.
XX
SQ   Sequence 405 BP; 144 A; 48 C; 78 G; 135 T; 0 other;
     taggtagtgg taagagaaag tcgtgtgagt gtgctcatta gatttattct aaaatagttc        60
     cattagaatg tattgtgtaa tttaaggtaa ctactattcg gtaaaaattc tagtttacaa       120
     gaaaacccaa ctacataggt agtggtaaga gaaagtcgtg tgagtgtgct cattagattt       180
     attctaaaat agttccatta gaatgtattg tgtaatttaa ggtaactact attcggtaaa       240
     aattctagtt tacaagaaaa cccaactaca taggtagtgg taagagaaag tcgtgtgagt       300
     gtgctcatta gatttattct aaaatagttc cattagaatg tattgtgtaa tttaaggtaa       360
     ctactattcg gtaaaaattc tagtttacaa gaaaacccaa ctaca                       405
//
ID   MSAT-8_RPr  repbase;    DNA;    INV; 495 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   satellite seqeunces: consensus.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT-8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-495
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from insects.";
RL   Repbase Reports 15(10), 3515-3515 (2015).
XX
DR   [1] (Consensus)
XX
CC   unit length is 165-bp long.
XX
SQ   Sequence 495 BP; 165 A; 63 C; 75 G; 192 T; 0 other;
     atctttaact tcaaatatct caaaaactac tcgatggatt tcgtttatat ttcacctgta        60
     tatggagaca acttttgtct ataattgtat aaaatttcgt aaaaatctgt cgagtagtta       120
     acgagatatt tagagttaaa ttttggtttc gtttgaaaca gtgaaatctt taacttcaaa       180
     tatctcaaaa actactcgat ggatttcgtt tatatttcac ctgtatatgg agacaacttt       240
     tgtctataat tgtataaaat ttcgtaaaaa tctgtcgagt agttaacgag atatttagag       300
     ttaaattttg gtttcgtttg aaacagtgaa atctttaact tcaaatatct caaaaactac       360
     tcgatggatt tcgtttatat ttcacctgta tatggagaca acttttgtct ataattgtat       420
     aaaatttcgt aaaaatctgt cgagtagtta acgagatatt tagagttaaa ttttggtttc       480
     gtttgaaaca gtgaa                                                        495
//
ID   MSAT1_AG    repbase;    DNA;    INV; 258 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Mini-satellite type DNA - a consensus sequence.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-258
RA   Jurka J.;
RT   "Minisatellites from African malaria mosquito.";
RL   Repbase Reports 9(2), 637-637 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 258 BP; 58 A; 52 C; 52 G; 96 T; 0 other;
     caaaaacttt tgcgactttt gcgacttttg cgattgtcgc aaaaactttt gcgacttttg        60
     cgattgtcgc aaaaactttt gcgacttttg cgattgtcgc aaaaactttt gcgacttttg       120
     cgattgtcgc aaaaactttt gcgacttttg cgattgtcgc aaaaactttt gcgacttttg       180
     cgacttttgc gattgtcgca aaaacttttg cgacttttgc gattgtcgca aaaacttttg       240
     cgacttttgc gattgtcg                                                     258
//
ID   MSAT2_AG    repbase;    DNA;    INV; 106 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   01-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Mini-satellite type DNA - a consensus sequence.
XX
KW   MSAT; Satellite; Simple Repeat; Nonautonomous; MSAT2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-106
RA   Jurka J.;
RT   "Minisatellites from African malaria mosquito.";
RL   Repbase Reports 9(2), 638-638 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 106 BP; 42 A; 16 C; 12 G; 36 T; 0 other;
     tttaaagatt catgaatctc taaagattca cgaatcttca aagattcatg aatctttaaa        60
     gattcacgaa tcttcaaaga ttcattaatc tgtaaagatt catgaa                      106
//
ID   MTANGA_I    repbase;    DNA;    INV; 4046 BP.
XX
AC   AF387862;
XX
DT   09-MAR-2006 (Rel. 11.02, Created)
DT   09-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   Anopheles gambiae mtanga retrotransposon (internal portion).
XX
KW   Copia; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; MTANGA_LTR; internal portion; MTANGA_I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4046
RA   Rohr C.J., Ranson H., Wang X. and Besansky N.J.;
RT   "Structure and evolution of mtanga, a retrotransposon actively
RT   expressed on the Y chromosome of the African malaria vector
RT   Anopheles gambiae.";
RL   Mol Biol Evol 19(2), 149-162 (2002).
XX
DR   EMBL/GenBank/DDBJ; AF387862; Positions     120    4165.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..1473
FT                 /product="MTANGA_I_1p"
FT                 /translation="MDGGKFCIEKLRSGGYETWRFKVEMLLVRENLWKFES
FT                 TAAPESLTETWKEGDAKARATIALLVDDCQHPLIRDCKTAKGTWDALQKHH
FT                 QKTTMSTKVSLLKKLCKAEYDESGDMEAHLFRMDELFSSLMNAGQELDSSL
FT                 KVAMVLKSMPESYDHLTTTLETRSDDDLTMELVKSKLLDEAQKRMEKSHQS
FT                 ESILRVGPEKKITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKNENCS
FT                 SSGGQRESLKPKPKGKVAKSSEFSFTVGVVSKKREQPKSWIIDSGATSHMC
FT                 CDRAFFDELKQSTGVSITLADGNETVVKGVGSGHLYYYEENGDRRKITLND
FT                 VYYVPELESNLISVGKLVNKGAKVTFDETRGCVVECEGILATVGQWKHEGC
FT                 SSHERLHPFMASQAASGTGTLTQFSELRVKAWRREFLSKNATFSRPVSVVL
FT                 KGRLLENPSRRLRNDKQREFWTWYTRTSVVP"
FT   CDS           1473..4043
FT                 /product="MTANGA_I_2p"
FT                 /translation="MNTVTSGGSRYFLTMIDDFSRYTTVYFLKRKSEAAEV
FT                 IEEYVTMVHNRFGRNPIVIRSDQGGEYKSKRLGQFYRAKGIVPQFTAGYSP
FT                 QQNGVAERKNRTLVEMARCMLIDAKLGYRFWAEAINAAVYLQNISSSRSIE
FT                 KTPFELWYGKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLIFVGYADN
FT                 HKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDDD
FT                 FPFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGD
FT                 DGHTLERAAEELTVRRSSRSTKGVPPQRFRETTGMVRIFLNERILITQEYC
FT                 EPRTFEEAMSCPDRDLWKRAMEEEIKSLHENATWEIASLPKDRKAVGSKWV
FT                 FKRKMDGDGKIVQYKARLVAKGFSQVYGADYDEVFAPVAKQTTFRTLLSIA
FT                 ARRKLIVKHVDVKSAYLYGDLAETIYMKQPTGFEIGSKNDVCLLKKSLYGL
FT                 KQAGRVWNQTITEVLRSLGFHSSEADPCLFVKNKRDRWSFILLYVDDMLVA
FT                 CSEDREYEDIENTLKRHFKITTLGDVRNYLGIRIERGQNGEYLLDQASYIR
FT                 RIAKRFGQEDARPSRIPMDPGYPKIQQKEEKPMPRNDDFQSLVGALLYVAV
FT                 NTRPDIAISASILGRKVSNPCQADWTEAKRTLRYLNSTADLKLKLGEDGQL
FT                 EAYVDADWAGDHQDRKSNSGFIFHLGGPISWSARKQQCVTLSSTEAEYVAL
FT                 AEACRELLWLQKLMKDVGEKTTGPIVIREDNQSCLAMLPAEGGCRRTKHID
FT                 TRYNFIRDLVNNNVIQVQYCPSERMIADALTKPLSKVKLVTCRKKLGLQSL
FT                 QLEE"
XX
SQ   Sequence 4046 BP; 1196 A; 808 C; 1064 G; 978 T; 0 other;
     ggttatgggc ccagacaagt attttagaag caagtaatat ttgaaatgga tggcggaaag        60
     ttttgtatcg agaagctgcg tagcggtgga tatgaaacat ggcgattcaa agtcgaaatg       120
     ttgctagtcc gggaaaacct gtggaagttc gagtcaacgg ccgcccctga atcattgacc       180
     gaaacctgga aggaaggtga cgctaaagcc cgggcaacga tcgctcttct tgtggatgac       240
     tgccagcacc ctttgatccg tgactgcaag acggccaaag gtacgtggga tgcactccag       300
     aaacatcatc aaaaaacgac gatgtctact aaggtatcgc tcctgaagaa actctgcaag       360
     gcggagtacg acgagagcgg tgacatggag gcgcatttgt ttcgaatgga tgaacttttc       420
     tcaagtctga tgaacgcggg ccaggaactg gattcgagct tgaaagtggc catggttctg       480
     aaaagtatgc cagaatccta cgatcatctc acaacgacgt tggaaactcg ttcggacgac       540
     gacctgacca tggaattggt gaaaagtaag ctgttagatg aagcgcagaa aaggatggag       600
     aaatcccatc aaagcgaatc catcttacgc gttggtcctg agaagaagat tacgtgtcat       660
     cgatgtcgaa aacccgggca tatgaaacgt gattgtccga tggaatcgaa taatacgcct       720
     acatctacta cgatgcgtga ttattcgagg aaaaatgaaa attgttcttc ttccggtgga       780
     caaagagagt ctttgaagcc caagcctaag ggtaaagtag caaaatcttc tgaattttcg       840
     tttacagtag gcgtggtatc caagaaacga gagcaaccga agtcttggat aattgactct       900
     ggagccacct cacatatgtg ttgcgatcga gcattctttg atgagctcaa acaaagcaca       960
     ggtgtgagca tcactctagc cgatggcaat gagacggttg tcaagggtgt tggttccggt      1020
     catttgtact actatgagga aaatggagat cgacggaaga ttactctgaa cgacgtgtat      1080
     tatgttccgg aattagagtc caatttgatt tctgttggaa aactcgtcaa caaaggagcg      1140
     aaggtaacgt ttgatgaaac ccgaggctgt gtagtggaat gcgaaggtat cctagcaacg      1200
     gttggacaat ggaagcatga aggttgttca tcacacgaaa gactgcatcc attcatggca      1260
     tcgcaagctg caagcggcac cgggacccta acgcaattca gcgagttgcg cgtgaaggct      1320
     tggcgaaggg aatttctatc aaaaaatgcg acattttcca gacctgtgag tgttgtgttg      1380
     aagggaagat tgctcgaaaa cccttcccgc cgattacgga acgacaaaca acgagagttt      1440
     tggacctggt acacacggac atctgtggtc ccatgaatac agtgacgtca ggtggatcac      1500
     gctacttctt aacaatgatc gatgatttta gtcgctatac aacggtgtat tttttgaaac      1560
     gaaaatctga agcagctgaa gtgatcgaag agtatgtcac tatggtccat aatcgttttg      1620
     gaaggaatcc aattgtcatc cgctcagacc aaggcggtga gtacaaaagc aaacgtttgg      1680
     gtcaattcta tcgggccaaa ggaatcgttc cgcagtttac agcaggttac tccccgcaac      1740
     aaaatggagt tgctgaacga aaaaatcgga cgttggtaga aatggctcgc tgcatgttga      1800
     ttgatgcgaa actagggtat cgtttttggg ccgaagcaat caatgcagca gtatatctcc      1860
     aaaacatttc gtcatcgagg tctatcgaga agacgccgtt tgaattatgg tatgggaagc      1920
     aaccggacta cagtaatctg cacatctttg gttgctcagc tattgttcat gtgccagctg      1980
     agaagcgcag taaactcgat ccaaagggga agaagcttat atttgtggga tatgctgaca      2040
     atcataaagc gtttcgtttt gtagatccta cctccaataa gataaccctt agccgtgatg      2100
     cgaagtttat cgaaatggaa gatttcgaac atgccgcgat taatcgttcg aaaaagacga      2160
     atcctcaaat tgttgaatac gaattcgacg atgattttcc tttcgatgac gattccgatt      2220
     tcgatgacga tgtcggtgat cgtctagaat ctgaagaaga agacagcacc gatgaaactc      2280
     taattgagga ggagctaacg gatacggatt ccagtatgtg cgattctacg aacgaagatg      2340
     acggtgatga tggacacact ctcgaaaggg cagctgagga gctgacggtt cgacgatcat      2400
     cccgtagcac aaagggtgta ccacctcaac gtttccgaga aacaactgga atggtaagaa      2460
     ttttcttaaa tgaaagaatt ttaatcaccc aggagtactg cgagccccgt acatttgaag      2520
     aagccatgag ttgcccagat cgagacttgt ggaagcgtgc aatggaggag gagatcaagt      2580
     ccttgcacga aaatgccaca tgggaaatcg cttctttgcc caaagaccgc aaagctgtgg      2640
     gcagtaagtg ggtttttaaa agaaagatgg acggcgacgg caaaatagtc caatacaagg      2700
     caaggcttgt tgcaaaaggt ttcagccaag tgtatggtgc ggactatgac gaagtttttg      2760
     cccccgtggc gaagcagacc acttttcgca ctttgttatc aatcgctgct agaagaaagt      2820
     tgattgtgaa acatgtggac gttaagtcgg catacttgta tggagacctg gcagagacga      2880
     tctatatgaa acaaccgact ggatttgaaa ttggttcaaa aaatgacgtg tgtctgctga      2940
     aaaagagtct atatggtttg aagcaagcag gaagagtatg gaaccaaact ataaccgaag      3000
     tgcttcggag tttggggttc cattcttcag aagcagatcc ttgtctgttt gtgaagaaca      3060
     agcgtgatcg atggtcattc atactgttgt atgtggatga catgcttgtt gcttgctctg      3120
     aggacagaga gtatgaagac atcgaaaaca ctttgaaacg acattttaag ataaccaccc      3180
     tgggcgatgt aaggaattat ctgggtatac gaatcgaacg aggacagaat ggggaatatt      3240
     tgttagatca agcctcgtac attcgtagga ttgctaaaag attcggacaa gaagatgcaa      3300
     gaccatcccg tatcccaatg gaccccggtt acccgaaaat acagcaaaag gaggagaaac      3360
     caatgcctcg aaacgacgat ttccaaagct tggtgggtgc tttgctgtac gttgcggtca      3420
     acacgcggcc cgacattgct atcagtgcat ccatcctggg gcgcaaggtg agcaatcctt      3480
     gccaagctga ttggacggaa gccaagagaa cattgcgata tctgaattca acagcagatc      3540
     tgaaattgaa acttggtgaa gatgggcagc ttgaagcata cgttgatgcc gattgggcgg      3600
     gcgaccatca agatcgaaaa tcgaactcgg gattcatttt tcatttaggt ggaccgattt      3660
     cgtggtcagc tcggaagcag cagtgcgtga ccctttcgtc gaccgaagcg gaatatgtcg      3720
     ctttagcgga ggcctgtcga gagctgctct ggttgcaaaa acttatgaaa gatgtaggtg      3780
     agaagaccac tggacctatc gttatccgtg aagataacca gagctgcctg gcgatgttgc      3840
     cagccgaagg gggatgtaga aggactaagc acatcgacac ccggtacaat tttatccggg      3900
     acctggtgaa taacaacgtt atacaggttc aatactgccc ttccgaacgt atgattgctg      3960
     acgcgttgac aaagccattg tcaaaagtga agttggtaac ttgtcgtaag aagttgggac      4020
     ttcaatcgtt gcagcttgag gaggag                                           4046
//
ID   MTANGA_LTR  repbase;    DNA;    INV; 119 BP.
XX
AC   AF387862;
XX
DT   09-MAR-2006 (Rel. 11.02, Created)
DT   09-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   Anopheles gambiae mtanga retrotransposon (LTR portion).
XX
KW   Copia; LTR Retrotransposon; Transposable Element; MTANGA_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-119
RA   Rohr C.J., Ranson H., Wang X. and Besansky N.J.;
RT   "Structure and evolution of mtanga, a retrotransposon actively
RT   expressed on the Y chromosome of the African malaria vector
RT   Anopheles gambiae.";
RL   Mol Biol Evol 19(2), 149-162 (2002).
XX
DR   EMBL/GenBank/DDBJ; AF387862; Positions       1     119.
XX
SQ   Sequence 119 BP; 39 A; 20 C; 21 G; 39 T; 0 other;
     tgaaggaatc caagcatgca tgattgattc ttcatcatag tagtcattta aatgttcaat        60
     aaaggttagt tcgctttcat cactaggaga gaatagttca catttactgc gttacaaca        119
//
ID   mTA_Ele42   repbase;    DNA;    INV; 2251 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   11-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; mTA_Ele42.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2251
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2251
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~97% identical to consensus. This consensus
CC   is ~95% identical to the original sequence in [1]. TIRs are ~530
CC   bp long.
XX
SQ   Sequence 2251 BP; 776 A; 413 C; 361 G; 700 T; 1 other;
     cacggtgtgc cagaaaccgt tattaacaga aaaaaatgtc catgaattcg gcacctacca        60
     ttcgaaagat atagtattca agcatcttct ccgtgaattt gaaaatattc taacgaggga       120
     atcgaaagtt atagtgattt gaaggttttg agctattttg catgggatat tcacatgctt       180
     ataaatattc ctcaacggtg catcattatt aacttgtaaa caagccaagt aaccatcagc       240
     tttgcattaa gcattcaaaa catgtgatat ccaagcatct tccctgtaaa tttgaaatca       300
     ttacgtcgag aaaatcagaa gttacagtga tttgtatatt taccattatt tctatgaagt       360
     ctaaattaga gcttttctat ggctttgtta tattagtgca cagaatttac aaataaaaat       420
     gtccatacga ctgacactcg gcattcaaaa gatgtattat tcaagcatct tcgcagctag       480
     tttgagaata ctttatctag agacaacaca actaaagtac tttgaagttt tggacctata       540
     atagagtaaa ttttgagtat taaattacca cgttcaatgt ttttaccact actaattgca       600
     acaaattctt atcaatatgt tgatcaatgt gatttaatag cgtgattgac cgcctactgt       660
     tgcttctccg ttattacaag agcaactata catgcacaag gaaccaacgg atgctactta       720
     ggattagtcg cagcactctc agtgtgtaag taatggagtt ctcattcctt gtactaagca       780
     gtaccgcgtc ctgctgcgtc cgaatacatg tcaattgggg ttatggaata aatatttacg       840
     tgatactatc tttgaggaag ccgttggaat cctctgcact tccacgakaa gtcaatggga       900
     gtttggaaaa ttggaagtgg ttatattaca gattcgtctt ggtaaacaaa acgcttaatt       960
     acaatagtcc tagggatcat cacatcattt tcactggtta taccctgtta tacctccctc      1020
     aaaacataat gaagtcatca acataatgaa tataataaaa taaaaagtaa cccttttata      1080
     tgcacaaaac atgactgaag aatcaatatg acgatacctt tgatgacgaa ccattcaaag      1140
     atttcgcatg atgcaaatca tgcagcatca atccaaaaag taatctatca gtatctaaag      1200
     gaaaagtcga cgcttacagt atccaataat tctaggaacc aaacaaaata taaggcttgt      1260
     tgcatttaca tattttgcaa aacatgaaac aaggttaatt tctacaataa actcctactg      1320
     actattaatt gagcaaacac atatataaac gtatcccctt cgctgtcatg aataaaatgt      1380
     gaaccatcat atttagctta tttaaaacac tagcataaaa cgatctcact agttgataat      1440
     ccaacctcga ctgagcaaca tggtgccact ttcaaattgt tcaggttcac caatatgctt      1500
     atttgggcca taacgaaaca ctgccccgca aaacgcgcgg aaatgaaaca aaattcacaa      1560
     aaacgaaccc atttgcttgt gatttaatga aacactgcat ttcttcaatg taagatacaa      1620
     gttgaatgca aatctgttaa gttaatttgt gtcgaaatta ttaaatgcgt gttgcgaaca      1680
     ctatttcaga cgattgaaaa aaaaatctta atgactccaa aacttcaaag tactctagtt      1740
     atgttgtctt ttgataaaat aatctcaaac taactgcgaa gataattgac tactatatct      1800
     tttgaatgcc gagggtcagt cctatagaca tttttatttg taaattacgt acactttcat      1860
     aacaaaggca tataaatcag ccctaattta aacttcatag aaataatcat aaaaatacaa      1920
     atcactgtaa cttcagattt tctcgacgta atgatttcaa atttgcagag aaggtgcttg      1980
     gatatcacat gttttgaatg cttaatgcaa agctggtgat aacttggctg gtttacaagt      2040
     taataatgat gcaccgttgg gaaatattca taagcatgtg aatttccctt ccaaaatagc      2100
     tcaaaacttt caaatcacga taactttcga ttccctcgtt agaatatttt caaattcacg      2160
     gagaagatgc ttgaatgcta tatctttcga atggtgggtg ccaaattcat ggacattttt      2220
     ttctgttaat aacggtttct ggcacaccgt g                                     2251
//
ID   mTA_Ele45   repbase;    DNA;    INV; 1531 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; mTA_Ele45.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1531
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1531
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~99% identical to consensus. This consensus
CC   is ~98% identical to the original sequence in [1]. TA TSDs. TIRs
CC   are 24 bp long.
XX
SQ   Sequence 1531 BP; 461 A; 299 C; 269 G; 502 T; 0 other;
     ggggaacctg gtccaattcg gaccctgttc taattcggac catcaagcat ttctcaatac        60
     tggcgctact gtaaagatcg tgggtaccgt ttttctgctc accgtttggc ttagatctaa       120
     cacaataaat ttgacgcctt tcagttatta cgtttgcttt ttatattagt ttattgtttt       180
     gaagtgctca ggtgtactgt cggttggcgt tatttccaag cttctataag cgacaataat       240
     tctccaatct ctctgtgtta ttttataatc gaatcaccct agcctaagct ttcatctgac       300
     catatggttt tgatatgtct atgcaccgtt tgtgctcaac gagtttgaaa atctcaaaat       360
     gtgtgttggt ccaatccgga ccttttgata tggttcaata cggacctctt gattttcaac       420
     gtgtactcag tctattctaa gagctccacc ccgtgaaaat cttcccgact cgatcgaaaa       480
     tcacagaagt tgtaatattg attaatagtg cctttgtttc tgttgcggtc aagaaaatgg       540
     cttcgcaaaa aatctaagaa atgaggtaga ttaccaaaaa ctaaaggaat caataaatca       600
     gctacttgaa aagcatctcc atcaatacca cagccaagct ttatccaaaa tagtttggca       660
     atacgctata aaaaacgttt acgagtacta tataagaaca atacagtcaa ctatccctcg       720
     tccgatttac tgtgtttttg ttcacaagct cgaaggaaag cgcagtccct tcaatatagt       780
     gtactttaat ccataaatat aagtaggtac ttctcaaact tgaatttccg agacttcgag       840
     tctgtttgtt gtctgtttca gtttcccata caagttcacc ttttcaaccc gatatttcat       900
     agcaaagttt caatgtgtgg aaaattttac aatattcaac ttcaaaatta ctttttcgaa       960
     tgtattttgt caaaataaat aaaaaaaagc tctaaaattt gaaaatatgt gtacttcatc      1020
     tcgatagctc ccatacacga tagtctgttc aaaatcgagt caggaagagt tgactgtacc      1080
     caattttgaa caagtttccg atatattttt taatgaaatt catatttcac ttgagcttgt      1140
     tctgactcga attagtttga aatttctcac acattgagtt tattttttat gcttgcgctt      1200
     gcagaaaaag ttcaataagc tttaatacca aacaaatctg agttatattt tgttactaac      1260
     attgcaaata acgatgaaat atagggtggt ccgaattaga acatgggggg tccgaattgg      1320
     aacagggttg gtccaattcg gaccttttgg agaagttggt tcaaacatgt ctagccatgt      1380
     cctggtagga gctatcacaa aactctctga gagaaaaatg tgcgcgctga attgcgcttt      1440
     cacgaaaaca taaaactttt catgccgttc atcgtgctga aaagatatgg ccaaaaaact      1500
     gttactaggt ccgaattgga ccatgttccc c                                     1531
//
ID   MuDr-1x_AP  repbase;    DNA;    INV; 3643 BP.
XX
AC   Contig21440;
XX
DT   10-MAR-2008 (Rel. 13.03, Created)
DT   10-MAR-2008 (Rel. 15.12, Last updated, Version 2)
XX
DE   A distinct, diverged MuDr-type family.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDr-1x_AP.
XX
NM   MuDr-1x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3643
RA   Jurka J. and Bao W.;
RT   "Highly diverged MuDR-type families.";
RL   Repbase Reports 8(3), 237-237 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Related families are present in other invertebrates.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           628..2874
FT                 /product="MuDr-1x_AP_1p"
FT                 /translation="MSENQEFICTECGKKFKFSKTLRTHLKKAHPLIDVYQ
FT                 IAPTKKLKNNELYIYTCDLCDKSYCHKRNLDEHKKVAHCEKKETVVALVNC
FT                 SMCSFTTLCTSLMADHYSSVHNIVMQSNKFNFNSLDDFKTWKHDIEQKTNA
FT                 YYVKNCGLAKNFNENYIYIYYKCHSNGYFSSKSTGIRHIKSQGSNKINGYC
FT                 PASMNVILSECTKQCTVTFIDTHVGHLNDLGNLPLDKVTKDIIASKISEHI
FT                 PFEHILDEVRDNISNNVLERTHLLTKKDLYNIEASYNLNNESVLHKNDALS
FT                 VESWVQTVRSDDRFSLVYYKPQDNIDPLFPNLKKEDFVLIIMNNYQKSMLE
FT                 KFGNDVICIDGMNSYNFNLTTVLILDDMREGFPCAFMISNRVDEGVLKILF
FT                 SQIRALTGLIKPKVFMSDMAECFFNAWLVEMKQPKFRIYCTWHVDRAWSKN
FT                 LTKVKLKEKQAEVYKIIRTLLHEQDAKAFENIFESAINQMSADEQTCEFAN
FT                 YFVSQYGNYVQSWAYCHRIHAGVNTNMHIERMHCTLKHIYLQGKKVKRLDK
FT                 SLYALMKFIRDRSIDRLIVIHKGKITSKIKELRKRHKHSLEMSHEMVMKAT
FT                 EDSWDIISKKYSEMYTVNRLKISCDCQIQCQDCLFCIHCYTSSCIDSAIKW
FT                 NMCKHIHLVCQFQYSISNQKNNGMLTNCLVVNNNLNNMPNTDGEHNNETSN
FT                 ILSQLNNSAITSQLSLELEKRKLQESFNKVLNEISTIEELNVLKKLFYL"
XX
SQ   Sequence 3643 BP; 1392 A; 479 C; 516 G; 1256 T; 0 other;
     acaagcgtct aggtacagag aaccgaatgg aatcaaaatg gcgggttttt atcattaatt        60
     tacttttaga taagaaaaat acacaatctg ataacagacc ttatcataat aattattaca       120
     ggctacataa ttaatatagg tacctaatta aataattaat attataactt attttttaat       180
     ttacattatt tggattgtta aggtaattta agatattgct ataccatata attgttacct       240
     gttggtgatt tatgtatttt ttaattaaat gtttatacat taatatttat aaactaataa       300
     atttgttgtt attgttttgt tttatacttg tatgttaaat aatttaatat aatttatcca       360
     aaattatttt cctttgaata tgattcttct actatgtctg aaaatgttga gtaaatgctg       420
     caatgttgtg attcagttgt tgttttgttc ggtttcatgt taaataaatt aacataaatt       480
     attcaaaatt atttttctac catgtctgaa aatgttgagt aactgcaatg ttgtgattca       540
     gttgttgttg ttttgttctg tttcatgtta aataaattaa cataatttat ccaaaatact       600
     tttttttttt aataggatct aggtactatg tctgaaaatc aagaatttat atgtactgaa       660
     tgcggaaaaa agtttaaatt ttcaaaaacc cttagaaccc atttaaaaaa agcgcatcct       720
     ctaatagatg tgtatcaaat cgccccaaca aaaaagttga aaaataatga attatatata       780
     tatacatgtg acttgtgtga taaatcatat tgccataaga gaaatctcga tgagcataaa       840
     aaagtggcac attgtgaaaa aaaagaaacg gttgtagcct tggtgaattg ttcaatgtgt       900
     tcttttacta cattatgcac atcattaatg gctgatcact attcatcagt acacaatata       960
     gtaatgcaga gtaataaatt taattttaac agtttggatg attttaaaac atggaaacat      1020
     gatattgagc agaagacaaa tgcatattat gtaaaaaatt gtggtttagc taaaaatttt      1080
     aatgaaaatt acatttatat ttactataag tgccatagca acggttattt tagttcaaaa      1140
     agtactggta tacgacacat aaaatcccaa ggctcgaata agataaatgg atactgccca      1200
     gctagtatga atgttatttt gtcagaatgc acaaaacaat gtacagttac atttatagat      1260
     acacatgttg gtcatctaaa tgatttagga aacttaccac tagataaagt aactaaggat      1320
     attatagcta gtaaaatttc tgaacacatt ccgtttgaac acatacttga tgaagttcgt      1380
     gacaatattt ccaacaacgt gttagaaaga acacatctat taacaaaaaa agatctttat      1440
     aacattgaag catcatacaa tttgaataat gaatcagtct tacacaaaaa cgatgcattg      1500
     agtgttgaat cttgggttca aactgtgaga agtgatgata gattttcctt agtatactat      1560
     aagccacaag acaatataga tccactattt ccaaacctaa aaaaagaaga ttttgtctta      1620
     ataataatga ataattatca aaaatcaatg ttggaaaaat ttggtaatga tgtaatttgc      1680
     attgatggca tgaattcata taatttcaat cttaccacag ttttgattct tgatgacatg      1740
     agagaaggtt ttccttgtgc tttcatgata agtaataggg ttgatgaagg tgtattaaaa      1800
     attttatttt ctcagattag agctcttaca ggactaatta aaccaaaagt atttatgtct      1860
     gatatggcgg aatgtttttt taatgcatgg ttggttgaaa tgaaacaacc aaaatttaga      1920
     atatattgta catggcacgt agatagagca tggagtaaaa atttgactaa agttaaattg      1980
     aaggaaaaac aagccgaagt ttacaaaatt ataagaacat tattgcatga acaagacgct      2040
     aaagcatttg aaaacatttt tgaaagtgct attaatcaaa tgtcagctga tgaacaaaca      2100
     tgtgaatttg ctaactattt cgtaagccaa tatggaaatt acgttcaatc atgggcatac      2160
     tgccatcgaa ttcatgctgg agttaatacg aatatgcata tagaacgaat gcattgtaca      2220
     ctaaagcata tttacttaca gggaaaaaag gtaaagcgcc ttgacaaatc tttatatgct      2280
     ttgatgaagt ttattcgaga tcgttctata gatagattaa ttgtaatcca taaaggaaaa      2340
     atcacatcga aaataaaaga actgcgtaaa aggcacaaac acagtctaga aatgtcacat      2400
     gaaatggtta tgaaagcaac agaagatagt tgggacatca tatctaaaaa atatagtgaa      2460
     atgtatacag tgaacagact taaaatttcc tgtgattgtc aaatacaatg ccaagactgt      2520
     cttttttgca ttcattgtta tacaagctct tgtatagata gtgcaattaa gtggaatatg      2580
     tgcaaacata ttcatctagt ttgccaattt caatatagta taagcaatca aaaaaataat      2640
     ggaatgttaa caaactgttt agtcgtgaac aacaacttaa acaacatgcc taacacagac      2700
     ggtgagcata acaacgaaac ttccaatatt ttaagtcaat taaataactc agccattaca      2760
     agccagctat cattagaatt ggaaaaaagg aaactgcaag agtcattcaa taaagtgttg      2820
     aatgaaatat ctaccattga agaactaaat gtcttgaaaa aactttttta cctataatac      2880
     caacattaac agcaataaga aataattcaa atacaccaac cttaaaaaga aaaacttctc      2940
     agacatcacc aacaaataaa aaaatcatac cacaacgccg tttatactcg accaagaaaa      3000
     caaggaaagt attagaaaag gtattagaaa caccaagcag aacagaacaa aatcatatca      3060
     gtgcatcatt aatattcaaa aataatactg cttaatagtt aatgattatt acctatttag      3120
     tatttatata ttactttata cacagcgtca aactgacaaa atcacaaatt aattaattta      3180
     tacatgacta tattattatg atctgacgaa taatcgattt ttatataata tttttgttta      3240
     ttactttaat tgatttttat ataataattt ttgtttatta ttttaattga gttttacata      3300
     atattatttg tttattttat acactgagtc aaactgacaa aatcacatat taattaattt      3360
     atacatgact atatcattat gatctgacga ataatcgatt tttatataat atttttgttt      3420
     attactttaa ttgattttta tataatatta tttgtttata ctttatacac cgagtcaaac      3480
     tattattata ttaattatta tgtatttttc ataattttgt ataatgatat tctatcagct      3540
     gtagcttgta ataaatattg tatatatttc ttatctaaat gtaaattaat gataaaaacc      3600
     cgccattttg attccattcg gttctctgtc cctagacgct tgt                        3643
//
ID   MuDr-1x_TCa repbase;    DNA;    INV; 3123 BP.
XX
AC   .
XX
DT   10-MAR-2008 (Rel. 13.03, Created)
DT   10-MAR-2008 (Rel. 13.03, Last updated, Version 1)
XX
DE   A distinct, diverged MuDr-type family.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDr-1x_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3123
RA   Jurka J.;
RT   "Highly diverged MuDR-type families.";
RL   Repbase Reports 8(3), 239-239 (2008).
XX
DR   [1] (Consensus)
XX
CC
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(659..1237,1245..1754,1735..2370)
FT                 /product="MuDr-1x_TCa_1p"
FT                 /translation="MKHDTKSKYVAERGSQGGKDGTTIIKYCCHRSGKYVA
FT                 RGKGLRHLKTQGSNKIDGFCPARLKVIIDKNNQCKVSFIKQHVGHDEEDLG
FT                 HLFLTLQERKCLANKMALKIPFPQILDEIRDSVVGSQLDRIHLLTRKDLSN
FT                 IERSYHLQSSVVRHESDAVSVDAWVKQRESSVVFSSTNPKVHFAQFIFILV
FT                 YAFGTQSESNSDLREEDFVLIIMNLGQEEILKKYGSDCICIDGIHGLNQYD
FT                 FEMHTLLVIDDVREGFPCAFLISNRSDETVLKIFFHHIKERIGFQLTSKVF
FT                 MSDMAEAYYKAWNFIMGPAKYRLVKRALSNYFYYNICNRLFCTWHVDRSWR
FT                 KNLSKIKTKEKQVSNAIQLQVTQYSCNEVCIFTSSRMHQVMVYKYLRTLLQ
FT                 ERDENAFLRMLNDFIRTITNDPETNEFSEYFKNNYINNRHCWAYCYRLHSG
FT                 LNTNMHIERMHRTIKYIYFGGRKVKRLDKALHEIEKFIRDRLFNRLTVLFK
FT                 GKLSHKLNELRTRHVTSQKLSTALLVSNGAGWKIPSNNSFEVYELEEKEGG
FT                 IACNNCKLMCMDCGVCIHKYTCSCVDPV"
XX
SQ   Sequence 3123 BP; 1034 A; 578 C; 611 G; 898 T; 2 other;
     actagcggct aggccccgcc ggtctacaaa tgttcgctca gtcgaaatgt tgcgagcgag        60
     gtcggaacag tacgaacgga acggagtaac ggaccataac ggacttctca tttcagctgg       120
     gctggttaag tctgtgttaa aagttctaaa gtggtcttga aacttgaaat gttaaattgc       180
     attgacttgc atcggcagtt ttgaatttca aaagatgtca gggaaagata tcaaatgttg       240
     tgtgtgccaa aaacagttta gtgcagtttt taatttggca aaacacgcgc ggaagtctta       300
     ttcacgtgtg tgcatttttt aacttcttaa actaaccata actaacttct aatttgtatt       360
     taatttgcag aacaagcagc tgatatcatc ccaaagaaga gttacaaata ccagtgttta       420
     caatgtaaca aaaatttttc cctgttaaaa aattttaatt accataagaa gacgcataac       480
     caatcgcata acccaccttc aaagaacaca tatgatgctg tgtgtccgat ttgccagttg       540
     aaggcaccaa aagataattt gatattgcat tcattttaaa gtagagcatg atataaaatg       600
     tgaaacacta gcaatagaat ttactacctt tgaggaattc tcaaaatgga aatcagatat       660
     gaaacatgat accaaaagta aatatgttgc agagcgggga tctcaaggtg gtaaagatgg       720
     gaccacaata atcaagtact gttgtcatcg ttctgggaaa tatgttgctc gcgggaaagg       780
     gttaagacat ttaaaaacac aaggttcaaa taaaattgac ggtttctgcc ctgctcgttt       840
     aaaagtaatc atcgacaaga acaaccaatg taaagtgtct tttatcaaac aacacgtggg       900
     tcacgatgaa gaagatttgg ggcatttatt cctcaccctt caggagagaa aatgtttggc       960
     aaacaaaatg gcattaaaaa ttcctttccc ccaaattcta gacgagatac gagactcagt      1020
     ggtgggatca caattagatc ggattcactt actgaccaga aaagatctga gcaacattga      1080
     aaggagctac cacttacaat catccgtcgt tcggcatgag agtgatgccg tcagcgttga      1140
     tgcctgggta aaacaaaggg aaagttctgt agtattctct tctacaaacc ccaaggtaca      1200
     ctttgctcag tttattttta ttcttgttta tgcattttaa ttaaggaacc caatctgaaa      1260
     gcaattccga tttacgagaa gaggattttg tactaattat tatgaacctg ggtcaagaag      1320
     aaattcttaa gaagtacggt tcagactgca tttgcattga tggcatccat ggcttgaacc      1380
     aatacgattt cgaaatgcac actttgttag tgattgatga tgtacgggaa ggatttccat      1440
     gcgcattttt aatttccaat cggtcagatg aaactgtact aaaaattttt ttccatcata      1500
     tcaaagaaag aattggcttc caacttacta gtaaagtttt tatgtctgat atggcagaag      1560
     cctattacaa agcttggaac ttcataatgg gccctgcaaa gtataggtta gtaaagagag      1620
     cattatccaa ctatttttat tacaatattt gtaacaggct tttttgtaca tggcatgtgg      1680
     atcggagttg gaggaaaaac ctttccaaaa ttaaaaccaa ggagaaacaa gtgagtaacg      1740
     caatacagtt gcaatgaagt ttgtatcttt acttcttctc gtatgcatca ggttatggtt      1800
     tacaagtacc tacggacttt attacaagag agagatgaaa acgcattctt gcgtatgctg      1860
     aatgacttca ttaggactat caccaatgac ccagagacta acgagttttc tgagtacttc      1920
     aaaaataatt acattaacaa tcggcattgc tgggcatatt gttatcgttt acactccggg      1980
     ctaaacacca acatgcacat agaacgcatg cacagaacca tcaaatatat ctattttggt      2040
     ggacgaaaag tcaagcgttt ggacaaggca ttacatgaga tagaaaaatt tataagggat      2100
     cgtttattca accgccttac agtcctgttt aaaggtaaat tgtcacacaa attgaatgag      2160
     cttcgcacac gccatgtcac tagccaaaag ctttctacgg ccttgcttgt atcaaacggt      2220
     gctggatgga aaattccttc aaataactct tttgaagtgt acgagcttga agaaaaggag      2280
     ggtggtattg catgtaataa ctgcaagttg atgtgcatgg attgtggtgt ttgcatacat      2340
     aagtacactt gtagctgtgt ggatcctgta taaaattcac atgtgcaaca catacaccta      2400
     ttgtgtagat atstmaaaca cagacacttc ctacccaaag agttgaaaag cagtttattg      2460
     ccaaagaaag gcagagactg ggtgaaactt ttattcaact gctagaaggt gcgacttgca      2520
     tggaacaact tgaagctgcg aaaaacatgt gtatagctct agaacccaca ctgcaagcaa      2580
     tagcaacgaa aagggagcta acaacaccgt ctacacgtgc aagtcctagc aacaaaaaaa      2640
     ttacatctca acgaggtgta ttgcattcca ccaagaaaaa aaacaagaga ccatcaatga      2700
     ctctagttgc gcctacaaat gaagagatgc aagcaatcgc gatacgaacg ttgtccaaat      2760
     aattttacta ctgaacaata attaacttta ataaatactt acgcattagc tttaaattat      2820
     tttattgtac ccttttccac tgagtagact taaacgcagt cttgtcggtt gtagcacata      2880
     atgcttctcc aataataaat caaaaattaa tgtatacaca actgtaaatt ttgtcttcat      2940
     gcctaaattt tatggtacag ccactgatct gtgaatttat gtatttacta ttctcggatt      3000
     cttttgaaga tgaaatttat aatagtaatt acccgctttg gccaatattc gggctgttcc      3060
     gactccgctc gcaacatttc gacagagcgg acatttgtag accggcgggg cctagccgct      3120
     agt                                                                    3123
//
ID   MuDR-1_DEl  repbase;    DNA;    INV; 7042 BP.
XX
AC   .
XX
DT   16-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-7042
RA   Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 429-429 (2012).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3118..5913
FT                 /product="MuDR-1_DEl_1p"
FT                 /translation="MELRSKTYLHPNWTDTIAKYLYKKVPLPCAFSFKKAK
FT                 ISDKEDSIWLRIEGHCSECNSTFKGHCLVEPEQNCGILISVSVPDTRGIPH
FT                 DKKRRCTGSRRLEIGKELILKKAAVWRKEATKDMSDDDAEPNYIPKLPTLR
FT                 KLREEAINRHLGITKDWDPISSLYLKKYEGELAGCIMDIGLDEFFCIYCTG
FT                 AQIKTYISRIKNIKKICVDATGSVVLPIAKPNGDTSYVFLYQIVMHGDDSI
FT                 FPVFQMLSAKHDTASIQFWLSRFISKSGRFPPEVVCDFSLALLNGISLSFN
FT                 DCRLNEYLATCFRCLSNEENMQLPRSYIRLDIAHLIKMMCRKNVFKGKLPN
FT                 VKDFYIRCIGVATTCETKESFARMMKSMLIVALSEASGENIEGEYLPSEKN
FT                 EKYLLTRIATFTAPEYDYQENEWLPEEQEEMDGDIAHFINKIQKSAEKKAS
FT                 KCKSVSCRPNPYFLPELVQQLLKLGRYFILWTNVMKDKFSSKYDVGSSALV
FT                 EAYFKDLKNSDMSIFNRPVRADKFVVQHIRCIESVCKLERAAMKRKCYTVP
FT                 VFIKKIKENALQNEKESLGDISNEDDVEYLLKEENWKVKNNTTKLPEYNIK
FT                 EDDFGNVNNKSKNNGLHDGANQKSRGKYLKECPNVDLLYNRPHRRKRDEIL
FT                 HNGGAMGPVWIGTRSIQFKNTCPFDSLVEILSTAYMDNFVYKRQMDSIYTD
FT                 NLTVDFIKKYASEGISSGLYCDRGLILISFFEEKNRVVKCDANIGSFISQV
FT                 LSGIPSASIRRSHELSEVSKCDNLENVINRLELVDAEQVSRLGLHGALVAF
FT                 IKEFFYRYNENCTRCGEKLILEIDPGPHIIIDLEFAMESTFHKIFKTDATG
FT                 SATLLELPLEISVKNQRYILSGAIEYIPSTGTSIGHYIAHCRRITGFWELH
FT                 NDMSRQWRKSTASDTKMAIHIVIYTRTE"
XX
SQ   Sequence 7042 BP; 2363 A; 1156 C; 1278 G; 2238 T; 7 other;
     agctcaaaga agttgggtcg actaaaatcg aattttcgaa atttgaaaag cggaatcgtt        60
     tgcccatttt ttgcccactt ttgcccacca attagttttt tttgcccacc tccagttttg       120
     aaaatatggg aagttcgaaa attttcgaag attttcgaaa acataaaagt tgactttttt       180
     aaattttttt tttttaaatc gcaagagaat cgtttgcccc acgttttgcc caccttttag       240
     aattttgaaa aagtaaaaac tttaaaaaat attgaacttt taagttttca taacttttta       300
     cccaataaaa aatcatttgc cgaaggcgaa aaacaatttt ttcgaaaaat aaaaactgcc       360
     catgtttgcc cacctcttaa aatttcagaa tctaaaaaaa attcgtttgt ccacctctta       420
     aaatatgatt tttcaacaaa aaacgtttgc cgacggcttt taaacaactt gtccgaaaaa       480
     aacatttgcc cacccattaa aaatagtttt ttcgaaaaaa taaaagatgc ccatgnttgc       540
     ccacctctta aaatttaaga atttaaaaaa aaattcgttt gcccacctct taaaaatatg       600
     ttttttcaac aaaaaacgtt tgcccgcctc ttaaaaatta atttttccga caaaagtcgt       660
     ttgcccaccc cttaaaaata gttttttcga aaaaataaaa gctgcccatg tttgcccacc       720
     tcttaaaatt taagaattta aaaaaaaatc gtttgcccac ctcttaaaaa ttagtttttt       780
     aacaaaaatc gtttgccgac ggcttaaaaa tagctttttt cgacaaaagt cgtttgccca       840
     cccattaaaa atagtttttt cgaaaaaata aaagatgccc atgtttgccc acctcttaaa       900
     atttaagaat ttaaaaaaaa tcgtttgccc acctcttaaa aatatgtttt ttcaacaaaa       960
     aacgtttgcc cacctcttaa aaattagttt ttccgacaaa agtcgtttgc ccacccctta      1020
     aaaatagttt ttcgaaaaaa taaaaactgc ccatgtttgc ccacctctta aaatttaaga      1080
     atttaaaaaa aaatcgtttg cccacctctt aaaaataagt tttttaacaa aatcgtttgg      1140
     tttttttgtc aatgacagta accggaaagc agtgttccgt tttcgagaaa accaaaacct      1200
     aaaataggga tttttagttg caatttttag caggtagtta tttaaatatt tgaatcattt      1260
     ttaaacctga atgactcgtt acattaacgg tctgcacgtt ttttacctgt caaggggtta      1320
     aatttgttga ccaaaatttg ggttttttaa caggtaccta ttttgcaaac ctgcacaaat      1380
     ttgggattgc ataattttta acctgaaaca cttgttgcct ttttaaaaat cgttattctc      1440
     ctcgattctc atactaggtc tataaatcga caccaagatt gcacaataag tctatttttg      1500
     tgtgaaaagt gaagtgaaaa gttgtgcgcg atatttgaaa acgcttaccg tacggaactc      1560
     tttaaatcgc cttttgaaaa caaagtgaat taaagtgaag tggcaaagca cgaaattcta      1620
     ataatcagtg ttcttgtttt catttcgagt ttccttgtga attttgttta gagtcttttt      1680
     aaagacttgc aaaattttta agttttaatt tccattttaa ttgacctgat attgaatttc      1740
     gtggcttgtc atttttgttg gtgcataagt gtcatcagtg ttgtgactat tccttcgttt      1800
     gaacacacaa ggaatttaag tgaagtggca tagcacgaaa ttctaataat aatttccttg      1860
     taaattttgt ttacagtctt tttaaagact tgcaaaaatt ttcaatattt aaaatttcac      1920
     tttaaatttt tttaatatta taatttcgtg acttgtcatt tgtgttggtg tagtgactat      1980
     tcctttgtaa agacttacaa ggaatttaag tgaagtggca tagcacgaaa ttttaatata      2040
     atcagtatca ttgagctcat gttgtttcct tgtaaatttt gtttaaagtc tatttaaagt      2100
     cttgtaaaat tttcaagttt taatttctgt tttaaatttc aatttcaatc agttttaaat      2160
     ttatatttta aagattaatt acatttttct tttgatagac tgacttggta ttagaaattc      2220
     gtgccactgt tacttgcatt aaatttaaat ttgtctacga tatttatagt gaaatgtttt      2280
     aaaaccaaat cacaagatat tactcctgga caaactgcaa gtatatatat attatatttt      2340
     tataataata ttactatacg tttatctacc aaaaaatata tataattttt aattttcttt      2400
     ttttaagcta aataaaattc aaaaattaaa aaaaaaatat atagatataa cttaaagtaa      2460
     tacataagat agttttaatt caagacaaaa cttcttaaaa tttaattcct tattgtgtgt      2520
     tttttttgta ctcaataagt ttaccttctt ccagtgataa gtgctttaaa ttatttttta      2580
     ttttgtcgcg ctagcataaa ttatatagca tacatagaaa acttattttt aagcctttta      2640
     cattttttgg tgcacagtgt ttataaagtg ttggtgtgtg tttttactta aattgttgtg      2700
     aagtttttaa ggatttcctg acacaatgcc ggccaagtca actgttcttc tccccgcctt      2760
     agtggatgta ctttgcagcc taaacatttt tacggaaact ggtgctctta agccaagaaa      2820
     ccatgatgtg tggatggaag ccagtaagcg gttgcaagga atgatcagtg caaagactct      2880
     gaatttctat gcccgagtta accggaacga tgtggttact atggtaaaac aacgatgtgg      2940
     cataacgcag ccggacaata ctgcaaatag tacaacattg aattggacgg cggctgagga      3000
     cgacccggag ttccagatta tagaacctaa aaaaacggac ctttgcccat tctttacttt      3060
     aacctgcatt tggacgaaga agtgtggaga ccaattgccc ctaaggtgga tcaaaaaatg      3120
     gaattgcgat caaagaccta tctgcatcct aactggacgg atactattgc caagtacttg      3180
     tataaaaaag ttcccctgcc ttgtgccttc agttttaaaa aggctaaaat atcggacaaa      3240
     gaggatagta tatggctacg gatcgagggt cactgcagtg agtgcaattc cacttttaaa      3300
     ggacattgcc tggtggaacc tgaacaaaat tgtggcatct taatatctgt ttcggtacca      3360
     gatacacgag gaattccaca tgataaaaaa cgacgatgca caggatccag acgactagag      3420
     ataggaaagg aactgatttt gaaaaaagct gcggtttgga gaaaggaagc aaccaaggat      3480
     atgagtgatg acgacgctga accaaactat attccgaaat tgcccacact tcgaaaactt      3540
     cgtgaagagg ccattaatag gcacctagga ataaccaagg attgggatcc aatttcgtct      3600
     ttatacctca aaaaatatga gggtgaattg gcaggatgca taatggatat cggattggat      3660
     gaatttttct gcatttactg cacaggagct caaattaaaa catacatttc aaggatcaaa      3720
     aatataaaaa aaatttgtgt cgacgccact ggaagtgttg ttttaccaat cgcgaaaccg      3780
     aacggggata cgagttatgt gtttttatat caaattgtga tgcacggtga tgacagtata      3840
     tttccagtgt ttcaaatgct ttcggccaag catgatactg ctagtattca attctggctc      3900
     agtcgattta tctcaaaatc tggacgattc ccaccggagg ttgtgtgcga cttctccttg      3960
     gcgctactta atggaataag cttgagtttt aatgactgcc gtttaaatga atatctagcg      4020
     acttgcttcc gatgtctctc taacgaagaa aatatgcaac tgcctcgaag ctacatacga      4080
     cttgacatcg cccaccttat aaaaatgatg tgccgaaaaa acgtttttaa aggaaaatta      4140
     ccaaacgtaa aggattttta cataagatgc attggtgtgg ctacgacatg tgaaaccaag      4200
     gaaagttttg ctcggatgat gaaatcaatg ctgattgttg cgcttagcga agcctccggg      4260
     gaaaacattg aaggggaata tctgccaagc gaaaaaaacg aaaagtatct cctcacacgc      4320
     atcgccactt ttactgctcc ggaatatgac taccaggaaa atgaatggtt accagaagaa      4380
     caggaggaaa tggatggaga tatagcccac ttcataaata aaatccaaaa atccgcagag      4440
     aagaaagcgt ccaagtgcaa atctgtaagc tgtcgaccaa acccctattt tttgcctgag      4500
     ttggtgcagc agcttttgaa attgggacga tactttatac tgtggacaaa tgtcatgaag      4560
     gacaaatttt cctcaaagta cgatgtgggt tcttcggcgc tggtggaagc atacttcaag      4620
     gatttaaaaa actcggacat gagtatattc aaccgaccag tgcgggctga taaatttgtg      4680
     gtgcaacata ttcgttgcat tgaatcggtc tgcaaactgg aacgtgcggc gatgaaacga      4740
     aaatgttaca cagtaccagt ttttattaaa aaaataaaag aaaacgcgct tcaaaatgaa      4800
     aaggaatcct tgggcgatat ttcaaatgaa gacgacgtgg aatatctatt aaaagaagag      4860
     aactggaagg ttaaaaataa caccacaaaa ctaccagaat ataatatcaa ggaagacgac      4920
     tttggaaatg taaataacaa aagtaaaaat aatggattac acgacggagc taatcaaaag      4980
     tccagaggga aatacctaaa ggagtgtcct aatgtggatt tgctgtacaa tcgaccacat      5040
     cgaagaaaaa gggacgagat cttgcataac ggcggagcaa tgggtccagt gtggattgga      5100
     acacgatcga tccaattcaa aaacacttgc ccattcgact ctcttgtgga aatattgtcg      5160
     acagcctata tggacaattt tgtttacaag cgccagatgg actcgattta tacggacaac      5220
     ctaacagtgg actttattaa aaaatatgct tccgagggaa tttcttctgg cctctactgc      5280
     gatagaggct tgatattaat aagttttttt gaagaaaaaa atcgggttgt taaatgtgac      5340
     gctaatatag gctcatttat aagccaagtg cttagtggaa tacccagtgc ttcaatacgc      5400
     cggtcgcatg aattgagcga agtaagtaag tgcgacaacc tcgaaaatgt gataaataga      5460
     ttggagcttg tagacgctga gcaagtgagc agactcggcc tacacggtgc actggttgca      5520
     ttcataaagg aatttttcta cagatataat gaaaattgca cgagatgcgg tgaaaagctg      5580
     atccttgaaa tagatccagg tcctcatatc atcattgact tggaattcgc aatggaaagt      5640
     acatttcaca aaatatttaa aacggatgca acaggatcgg caacattact ggaactacca      5700
     cttgaaattt ctgtgaaaaa ccaaagatat atactgagcg gagctattga atacattccc      5760
     tcgacaggta cgagcatagg acattatatc gcacattgcc gaagaataac tggattttgg      5820
     gaacttcata atgatatgtc cagacagtgg cggaaatcta cagcatcgga tactaagatg      5880
     gcgatccaca tagttatata tactcggacc gagtagcttc tcagccatac ggatttatta      5940
     taacaatata acatgttaat ataaggtatc tatttaagaa ataaaatata cagtttttgt      6000
     taaaaactaa actttttttt actgggtggg caaacgactt ttgtcgaaaa aagctatttt      6060
     taagccgtcg gcaaacgatt tttgttaaaa aactaatttt taagaggtgg gcaaacgatt      6120
     ttttttttaa attcttaaat tttaagaggt gggcaaacat gggcagcttt tattttttcg      6180
     aaaaactatt tttaaggggt gggcaaacga cttttgtcgg aaaaatcnat ttttaagagg      6240
     tgggcaaacg attttttgtt gaaaaaacan atttttaaga ggtgggcaaa cgattttttt      6300
     ttaaattctt aaattttaag aggtgggcaa ncatgggcag cttttatttt ttcgaaaaaa      6360
     ctatttttaa tgggtgggca aacgactttt gtcggaaaaa ncnattttta agaggtcggc      6420
     aaacgatttt ttgttgaaaa aacatatttt taagaggtgg gcaaacgatt tttttttaaa      6480
     ttcttaaatt ttaagaggtg ggcaancatg ggcatctttt attttttcga aaaaactatt      6540
     tttaaggggt gggcaaacga cttttgtcgg aaaaattaat ttttaagagg tcggcaaacg      6600
     ttttttgctg aaaaatcata ttttaggagg tggacaaacg aatttttttt agattctgaa      6660
     attttaagag gtgggcaaac atgggcagtt tttatttttt cgaaaaaatt gtttttttgc      6720
     cttcggcaaa tgatttttta ttgggtaaaa agttatgaaa acttaaaagt tcaatatttt      6780
     ttaaagtttt tactttttca aaattctaaa aggtgggcaa acgtgggcaa acgattctct      6840
     tgcgattaaa aaaaaaaaat ttaaaaaagt caacttttat gttttcgaaa atcttcgaaa      6900
     attttcgaac ttcccatatt ttcaaaactg gaggtgggca aaaaaaacta attggtgggc      6960
     aaaagtgggc aaaaaatggg caaacgattc cgcttttcaa atttcgaaaa ttcgatttta      7020
     gtcgacccaa cttctttgag ct                                               7042
//
ID   MuDR-1_DF   repbase;    DNA;    INV; 8699 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   MuDR-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-8699
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 798-798 (2012).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. Heterogeneous sample of sequences of
CC   different divergence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2900..6106
FT                 /product="MuDR-1_DF_1p"
FT                 /translation="MPYGKHIDFVAXVDALCSVDIFTETGAIKPRRDNVWT
FT                 EAXNQLHGKINARTLNFYARVNRNDVLNMVKKRCGFAQSDKTANSTXNCTA
FT                 PDDDPEFQVTEPXKSEPLTTIYLNLHMDEEVWKSIAPKADQDKDLRSRNNL
FT                 QNNWTDIVAKLVYEKVPLPCAFSFKRAKLSGKADSIWLQIEGRCSECNSIL
FT                 KGHCLTEPHLDSGITISVSVPDTRGIPHSKKRKCTGSRRMEIGEELILKKA
FT                 ALWRKEATKDMNEDDPEPSHLPSLPTLRKLREEATNKHLGIIKDRDPITSL
FT                 YLKKYDGELAGCILDIGLDEFFCIYCTGAQIKTYATRIKAVQKISVDATGS
FT                 VVMPIKKPNGDTSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRF
FT                 ITKSGHFPQEVVRDFSLALLNGISLSFNECRLSTYMTKCYQHLSNEMPTQL
FT                 PRCYIRLDIARLIKMMCRKNVFKGKLPNVKDFYIRCXGVATTCETKETFAQ
FT                 MLKSTLIVALSESSGEDEKGEILASFKNEKYLLTRIATFTAPVYEEELNEN
FT                 EFLPEQTEXVSNDISDFISXIKNSAEDEASMCNSAKCRPNPYYLPELVQHL
FT                 LKLGQYFVLWTNVLKTKFSSKYDVGSSALVEAYFKDLKNTDMSIFNRPVRA
FT                 DKFVVQHIRCIEAVCKLERAAMQRKNYDVPAFIKDTLIKEKDRAERKGLPE
FT                 ETQNNDDMEYLMNEENWKVKNNTIKPIEFTEDCEPETSHMAVEATKSNKEI
FT                 EIQDGTSGKPRGKYLKKCPNVELIYNRPHRRKRDEILRNGGAMGPVWIGSQ
FT                 LLQFKNTCPFDSLVEILSTAYIDNFFYKNELDTYYTDNLTVALVKKYAVEG
FT                 ISQGLYCDRGLILMSFFDQKNQIIYCHANIGTFVDQVLNGIPSATTRRSHE
FT                 NNSECESHGSLHHRLELADAKKIRDLGLHKGLLAYLEESFKTTREVCKRCG
FT                 GQQILERDPGPHXIVDLEFAMESAFHDIFKSGVKGTATLLQLPPEILIRKQ
FT                 KYXLSGAIEYVSATGPGIGHYISYCRRITGFWEVHNDMCRQWRKRTALKTE
FT                 MILHIIIYTRSG"
XX
SQ   Sequence 8699 BP; 2935 A; 1462 C; 1474 G; 2798 T; 30 other;
     agcttaaaga agttgggtcc aaaaaaattt cgaatttcaa ttttgaaaag tggaatcgnn        60
     tgaccctcgt ttgaccatta tgcccacctt ttagttnttt tttgaccacc cccccgtttc       120
     gaagatatgg aatttcgaaa attttcgaaa attttcgaaa aaaaaagttt ttcaatttcc       180
     aaattttttt tcctaatctg ttaaataatc gtttgaccag gtttgcccac cctttagaat       240
     tttgaaaaaa tttatacttt ggaagatata gggctccaaa gttttttaac nattacgcct       300
     taaaaaaaat cttaaaaatt tttttttcgg aaagcgttag acaatcgaat gctttcgant       360
     gcccaccctt tacatttttg aaaattttca atcttaagga tntacagaac tncaaacttc       420
     aaaacgatta aaaaaaaaac gtctgccgac cccttaaaaa atnaattttt cgaaaaacga       480
     atttatgccc acgtttgacc gccagctcaa atttaagatt ctaaaaaaaa tcgttcgacc       540
     ccccttaaaa ataaagattt ttaacaaaat tcgttttttt acccgccaaa agtgggtatc       600
     tcataaaaac aacgtttttt gacaccttaa aaattaattt ttcgaaaaac aaatttatgc       660
     ccacgtttga cccccagctc aaatttaaga ttctaaaaaa aaatcgtttg acgcccctta       720
     aaaataaaga tttttaacac aaaagcgttt ttttacatgc caaacgtggc tatctcataa       780
     aaacaacgtt tttttacacc ttaaaactta atttttcgaa aaaataattt atgcccacgt       840
     ttgaccccca gctcaaattt aagattctaa aaaaaatcgt ttgaccaccc cttaaaaatg       900
     aagattttta acaaaattcg ttttttacac gtcgaaagtg ggtatctcat aaaaacaacg       960
     tttttttaca ccttaaaaat gaatttttcg aaaaaataat ttatgcccac gtttgacccc      1020
     cagctcaaat ttaagattct aaaaaaaatc gtttgaccac cccttaaaaa tgaagatttt      1080
     taacaaaatt cgttttttta cacgccgaan gtggctatct cataaaaaca acgttttttn      1140
     acaccttaaa aattaatttt tcgaaaaaaa atttatgccc acgtttgacc cccagctcaa      1200
     atttaagatt ctaaaaaaaa atcgtttgac cgccccttaa aaatnaagat ttttaacacg      1260
     aatgggttaa cagttaacct gtttgaaagg gttttcccgt ttcatgttac tcttttaaag      1320
     ggttttttat atgactagtt ttttccgtaa ggtgcaataa attttataga ttgaatattt      1380
     ccaaactgga gcacttgtca cttaaaaaac ggttttttcc tcgactttcg tatcaggtat      1440
     aaatacaaag tgagtcaatt cttgtaggta ggaaataaaa tagttgaccc tttctatgtt      1500
     caatgaatgg tttacctact tccgtttaag gtttgaaaac ggttgtacct gttataaagg      1560
     gttttccgtt tcatgcaatt ttttatgggt ttttttatat gacaggtttt tacgcaatgt      1620
     gcaataagtt ttatggattg catattttta aacacttgtt acctaaaaac gctttcctcc      1680
     gcgattttca tatcagatat aaaatagaca cttacaagcc gaagttagtc tattttttgt      1740
     gtgaaaagtc aagtgaaaag ttgtgcgcga atttaattac gcttacagtc cggaactact      1800
     taaaatcgtt tgttcaaagt gaataaaagt gaagtgacat tgcacgaaat tctagtatat      1860
     tctttttatt tgtgttttaa attgttgatc cttgtgaatt ttgttgatag tctttttaaa      1920
     gacttgctaa attttcaagt ttgatttcga cgttaaattt cacttacaat tttacttatt      1980
     actagaattt tgtgccttgt cataagtgtt ccaacgtgag tgtctttaga gctgtgacaa      2040
     atccttcgtt tgcaatcaca aggaataaag ctggtgtgga gttgcacgaa attcttaata      2100
     gcaatctttg tgtttaattt aacgaatctt tgtgaatttg tagagtcttt ttaaagactg      2160
     acaacatttt tcaagtttga ttattttttc aaccataact tttctttttt aattttttaa      2220
     agaacttaaa attcaacaat tcaattcatt ttctgtctca aaaaatccgt ttctttttct      2280
     ttgtgttttg tgatttttgt tgatagtctt ttttaagtct tgcaaaattt taaaattttt      2340
     attcattcaa tcccatttaa ttaatttaat ttttctaaga acacaaccgt ttaaattttt      2400
     ggcttttaaa aaattttgtc tttccgtttt aactcacttg ttattagaat ttcgtgccgt      2460
     gtcataattt tcggttttac agcttagcgg cataaatttg gatagtaacc tactgctgct      2520
     acaactgtga aaactgcaag tacatccttt tttatatatt ttttttattt atatttaatt      2580
     tttaaattaa cattacaaaa gtactatatt tataagctct taaagttttt ttttattttt      2640
     aatatacata tcttatactt atatatttta ttataataat ttttataatt ttatacattt      2700
     tttaatttct tacaaaaaaa ttgaaaaaat atcataaccc taatataatt tgtataagac      2760
     aacactttat gtgaatttta ttcgtaattt tgtatctttt cttaaaattt ttatattccg      2820
     ctgcttaaaa actcgcagtg ataagtgcgt aaagtggtag tttgcttgta gtgataaaaa      2880
     gtgattccaa aaaaacacaa tgccatacgg gaaacatatc gatttcgttg ccatngtgga      2940
     cgcactgtgc agcgtcgaca tattcaccga aactggtgct attaagccaa gacgagacaa      3000
     tgtttggacg gaagcaagna accaattgca cggaaagatc aacgcaagga cattgaattt      3060
     ctacgcccga gtcaacagaa atgatgtact aaatatggta aaaaaacgat gtggcttcgc      3120
     gcagtcggat aaaactgcca acagtaccat naattgcaca gcacctgatg acgaccctga      3180
     gttccaggtc accgagcctn caaagagtga acccctcacc acaatttatt tgaacctgca      3240
     catggacgaa gaagtttgga aatcgattgc ccctaaagcc gatcaggaca aggatttgcg      3300
     ttcgaggaac aatctgcaaa ataactggac ggatatagtt gccaaactcg tgtacgaaaa      3360
     agttccgctt ccttgtgctt ttagtttcaa acgggccaaa ttatctggaa aagcggacag      3420
     tatctggctt caaattgaag gtcgctgcag tgagtgcaac tctatattaa aaggacattg      3480
     ccttactgaa ccgcatttgg acagtggcat caccatatcg gtctcagtac cagatactcg      3540
     nggtattcct cacagtaaaa aacggaagtg tactggatcc aggagaatgg aaatcggaga      3600
     ggaattgata ttgaaaaaag cggcattgtg gagaaaggaa gccaccaagg acatgaatga      3660
     agacgaccca gagccgagcc atttgccgtc attaccaact cttcgaaaac tgcgtgaaga      3720
     ggccactaac aagcacctcg gaatcattaa ggatcgtgat ccaataacgt ccctatattt      3780
     aaaaaaatat gatggtgaat tggctggatg catcctggat attggattgg atgagttttt      3840
     ctgcatttat tgcacaggcg cccaaattaa gacatacgca acaagaataa aagcagtgca      3900
     aaaaatttcg gtggacgcta ctgggagcgt ggtgatgcca atcaaaaaac caaacggcga      3960
     tacaagttat gtgttcttat accaaattgt gatggagggc gatgacagca tatttcctgt      4020
     atttcaaatg ctttccgcca aacacgacac tgcaagcatc caattttggc tgagcagatt      4080
     tatcactaaa tctggacatt ttccccagga ggttgtgcgc gacttctcct tggctcttct      4140
     caacggaata agcttgagtt ttaatgaatg cagactcagt acatatatga caaaatgcta      4200
     ccaacatctg tcaaatgaaa tgccgactca actgcctcga tgctatattc ggctggacat      4260
     cgcgcgtctg ataaaaatga tgtgcaggaa aaatgtcttc aaaggaaaat tgccaaatgt      4320
     gaaggacttt tacataagat gcatnggagt tgcaacgact tgtgaaacca aggagacgtt      4380
     tgcccaaatg cttaagtcca cgctaattgt tgcgctcagc gagtcctccg gagaggatga      4440
     aaaaggagaa atcttggcga gtttcaaaaa tgaaaaatac ctccttaccc ggatcgccac      4500
     gtttaccgct ccggtttatg aagaagaact gaatgaaaat gaatttctac cggaacaaac      4560
     ggaggangtt agcaacgata tatctgactt catctccagn attaaaaact ctgccgaaga      4620
     tgaggcgtcc atgtgcaatt ctgccaagtg ccgaccaaac ccatattacc ttcctgaatt      4680
     ggtgcaacat ctcctaaaat tgggacaata tttcgtacta tggacaaacg ttttaaaaac      4740
     aaaattctcc tcaaagtatg acgtcggatc ttcggccctc gtggaagcct actttaagga      4800
     tttgaagaac accgatatga gcatatttaa tcggccagtg cgagcggata agtttgtggt      4860
     gcaacacatc cgctgcatag aagccgtctg caaactagaa cgtgcagcga tgcaaagaaa      4920
     aaactacgac gtccccgctt tcataaaaga tacgttgata aaggaaaaag accgagcgga      4980
     acgaaaagga cttcccgagg aaacccagaa caacgacgat atggaatatc taatgaacga      5040
     agaaaactgg aaggtgaaaa ataacaccat caagccaatt gaatttacgg aggactgtga      5100
     acccgagact agtcatatgg cagtggaagc aacaaaatca aataaggaaa ttgaaataca      5160
     ggacggaaca agcggaaaac cgagaggaaa atatttaaaa aaatgtccga acgttgaatt      5220
     aatctacaac cgacctcatc gaaggaaaag ggacgaaata ttgcgcaatg gcggtgcaat      5280
     gggacctgtc tggattggct cacaactgct ccaatttaaa aatacttgcc cgttcgactc      5340
     acttgtggaa attttatcaa ctgcatacat cgacaacttt ttttataaaa atgaattgga      5400
     tacatattat accgacaacc taacagtggc tttagttaaa aagtatgccg tcgagggaat      5460
     ttctcaagga ctgtactgcg atagagggct gattttgatg agtttctttg atcagaagaa      5520
     ccagatcata tattgccacg ccaacattgg aacatttgtt gatcaagtgc ttaatgggat      5580
     acctagtgca acaactcgcc gatcgcatga aaacaatagc gagtgcgaaa gccacggatc      5640
     cttgcaccat cggttggagc ttgcagatgc caaaaaaatc agggacctcg gcttacataa      5700
     gggacttttg gcctatcttg aggaatcctt taaaacaacc agagaagtat gcaaaagatg      5760
     cggtggccaa cagatccttg aaagagaccc aggtccccat ntcattgttg acttggagtt      5820
     cgccatggaa agtgcgttcc atgatatctt taaatccgga gttaaaggaa cggcaacatt      5880
     gcttcaatta ccgccagaaa ttttaattcg aaaacaaaaa tatatnctca gtggtgcgat      5940
     tgaatacgtg tctgcgacag gacctggaat tggccattac atatcctatt gccgcaggat      6000
     tactggattt tgggaggtcc acaacgatat gtgcagacag tggcgaaaac gcacggccct      6060
     gaaaacggaa atgatcctac acatcatcat atatacgcga tccggataat tttaggtaca      6120
     tataaattaa taagtttaag tttatttatg tatataaata taagtatttt ttaatatatt      6180
     aaaatgtaac aaaaaacata aatatgtata tatttttaag atgtattaac ttgttttttt      6240
     taaataaaat tgttgttgtt ttttacaaaa aaagaaaggg ggtgcatata aaataataag      6300
     tttaaggtta tttatgtata taaatataag tatttttaat atattaaaat gtaacaaaaa      6360
     acataaatat gtatgtatgt aaatataaat aatataaaat gtataagtat aaataagtat      6420
     tatgtatata tttttaagat gtattaactt gcttttttta aataaaattg ttgttgttgt      6480
     tgttttttac aaaaaaaaag ggggtgggca aaagattttt gttgaaaaaa tttatttaaa      6540
     aaaaattttt tttaatctta aatttttttt aattacataa ttgaaaaatt aatttttcca      6600
     aaaaataatt tatgcccacg tttgaccact ttcccaaata aaaggtttga ccacctctta      6660
     aaaataacga ttttaaaaaa aatcgttttt tttttataaa acgggctntt acaaaaaaaa      6720
     attcattaaa aaagtgcata acactttcgc acaggtagaa ataataaaaa aaatcaatca      6780
     acacccccgt gtatctttac atacataaat aaataaatat tttctttttc aatcgcaaat      6840
     tcttttcctg tttctttcgc gcttacgaaa acctttcact cgcactcatg gaagtaatcc      6900
     ataaaggaat gctcaatacg gtactctcgc tctcggcaaa aaaaaactcg cgcactgaga      6960
     gaaagaaaaa aagttttgtt gaaaacaaaa attaaaaaaa aaacgttttt acattacagg      7020
     ctactataaa aaaagtcata aaaaaccatt aaaaaattgc ataagacttt tttttaaata      7080
     aataaaataa ataaataact ttttaatggc acatgctttt cctgtttctt tcgcataaaa      7140
     ggaacgatcg atacggtact ctccgctcta tacacaaaaa tttttttcgt tttctctttc      7200
     ctcttattcc gttgctaatc caaatgtaaa ttgtttttct tttttcttcg aactcttgca      7260
     ctggaattca tttttggcgc aaagagtgtt tgattgaaat ttntatggcg ggtatataat      7320
     atgagttatc ggtttgtgag cacattcatt gccaaaaatt ttaagtggga aatgcaaagc      7380
     ataatatgtt catgacttaa atacaacact taaatatttt cttcttatat tnaaaaaaac      7440
     ttttttcttt ctctcgctgt agacaaaaag caaaagtccc tacacgcgtg caccatttgc      7500
     tttatttgcg cgagtttttt ttgtcgagag cggagagtaa cgtattgagc attcttttat      7560
     ggatcacttt catgagtgcg agtgaaaggt taggttttcg taagtgcgaa agaaacagga      7620
     agagtaatgg cgctttataa agtaaatatt tacattttct ttaaacgcga atagttagtc      7680
     gatcctttat ttttacctgt gcgaaagtcc tatgcgatat tttaatgctt ttgcgtagta      7740
     aaaacacatt tttgttaaaa atcttagttt ttaattttta agaggtggtc gaataatttt      7800
     ttttagaatc ttaaatttga gctggtggtc aaaagtgggc ataaatttgt ttttcgaaaa      7860
     attcattttn aaggtgtaaa aaaacgttgt ttttacgaga tacccacttt cgacgtgtag      7920
     aaaaacgaat tttgttaaaa atcttcattt ttaaggggtg gtcaaacgat ttttttttag      7980
     aatcttaaat ttgagctggt ggtcgaacgt gggcataaat tattttttcg aaaaactcat      8040
     ttttaaggtg taaaaaaacg ttgtttttac gagataccca ctttcgacgt gtaaaaaaac      8100
     gaattttgtt aaaaatcttc gtttttaagg ggtggtcaaa cgatttgttt ttagaatctt      8160
     aaatttgagc tggnggtcaa acgtgggcat aaattngttt ttcgaaaaat tcatttttaa      8220
     ggtgtcgaaa aacgttgttt ttatgagata cccacttttg acgggtaaca agtttttgaa      8280
     gtttgaagtt ttatacatcc ttaagattga aatttttcaa aaatgtaaag ggtgggcaat      8340
     cgaaagcatt caattgtcta acgctttccg aaaaaaaaat tttttaagat tttttttaag      8400
     gcgtnatngt taaaaaactt tggagcccta tatcttccaa agtataaatt ttttcaaaat      8460
     tctaaagggt gggcaaacct tttcaaacga ttatttaaca gattaaaaaa aaaaaatttt      8520
     gaaaatgaaa aacttttttt cttcgaaaat tttcgaaaat tttcgaaatt cnatatcttc      8580
     gaaacggggg gtcggtcaaa aaaactaaaa ggtgggcaaa cgtggtcaaa cgagggtcaa      8640
     acgattccaa ttttcaaaat tgaaattcga aatttttttg gacccaactt ctttaagct       8699
//
ID   MuDR-1_DK   repbase;    DNA;    INV; 8080 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 17.07, Created)
DT   31-DEC-2011 (Rel. 17.07, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-8080
RA   Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1216-1216 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3890..4987,5166..7106)
FT                 /product="MuDR-1_DK_1p"
FT                 /translation="MPAKSQVDVPALVDALCSVNIFTETGTLKPRGDNVWI
FT                 EASNYLQGTISGQTLNFYARINRNNIITVVKERRGMQLDSTANNTINTTLN
FT                 NTAPEEDPEYLIDQASENGPLPTLYFNLEXDEETWRSIAPKANXKKXLRSR
FT                 NYLQPNWTDTXAMLVYKKIPLPCAFNFKKAKISEKVDNIWLQIRGYCNECS
FT                 SVLKGHCLVEPDENCGISINISVPDTRGIPHNKKRRCTGSRRVEIGQELIL
FT                 KKAALWRKEATTSMNNDDPEPSFIPKLPTLRKLREEATNRHLGINKDRDPI
FT                 SSLYLKKYEGELAGCILDIGLDEFFCIYCTGAQIKAYTSRIKXVRXISVDA
FT                 TGSVVLPILKPSGETSYVFYTKLMPPKQIYXYTCFKNISSKXXNELPPCYI
FT                 RLDIAHLIKMICRKNIFKGKLPNVKDFYIRCIGVATTCDTKESFSEIIKSM
FT                 LIVALSQSSGEDETGEYLPSYWNEKYLLTRIANFSALDHEENIDDNYVPEE
FT                 NEEIDEDIIVFIANIQRCAEEEAVKCSSVHCRPNPYYLPELMPPLIKLCRY
FT                 FVLWTNVMKDKFCSMYDVGSSALVEAYFKDLKNTDMSIFHRPVRADKFVVQ
FT                 HIRCIEAVCKLERAATKRKTLKIPGFIQETSTSKKSRNEREGFLEEMLNES
FT                 EVDHLLQEENWKVKNKSFKSSNSYVDEDDQNKNISQTVDLSKPKKEMELIE
FT                 NSKPRGKYLRKCPNVELIYNRPHRRKRDEILRNGGVLGPVRIGNQLYQFKN
FT                 TCPFDSMVEILTTAYIDNFFYKDQLDSYPPDNLTIELVKKYAVEGVSSSLY
FT                 SDRGLVLKSFFNEKHQVVQRDANIGTFIDQSLNGIPSSSTHKSHKTRESND
FT                 CENHVSLHHRLELQTYAEEVDELGLNDVLLSFVRKFFEKTEETCNKCGGQQ
FT                 ILEREPGPHVIXDIEFAMEFHRTKYLGTPGTASLQQLPSEILIQDKRYILS
FT                 GAIEFISASDGGIGHYIPYCRRITGSWEVQNDMCRQWRKFTSLNTKMTLHI
FT                 IIFTQTK"
XX
SQ   Sequence 8080 BP; 2663 A; 1245 C; 1458 G; 2662 T; 52 other;
     agctcagaga agccaggttc ggaaaaattt tttttcgaaa tttgaaagct ggaatcgttt        60
     gcccatcgtt tgcccatgtt tgcccaccaa ttagtttttt ttgcccacgt ccagttttga       120
     agatatgaaa attcgaaaag gttcggaaaa attttttttc gaaattcgaa agctggaatc       180
     gtttgcccat cgtttgccca tgtttgccca ccaattagtt ttttttgccc acgtccagtt       240
     tcgaagatat gaaaattcga aaaagttcga aaattttcga acttcaaaaa tttgactttt       300
     ttcaaaattt tttttggaaa tcgcaataac ttcgtttgcc cacgtttgcc caccctttag       360
     aattttgaaa ttttttcaac tttaggagat atgacacttt aaaaaattgc tctgttttac       420
     caaagaaata acgtattgcc cacctccgaa aactgaatat ttttagaaaa aaacgtttgc       480
     ccacccctta aaagttaatt ttaacgactg cccatccttt aaaaattaat tttgaggatt       540
     gcccatcctt taaaacttaa ttttttcgat tgcccatctt ttaaaattaa ttttgaggat       600
     tgcccatcct ttaaaactta attttaacga ttgcccatcc cttaaaaatt aattttgagg       660
     attgcccatc ctttaaaact taattttgag gattgcccat ctcttaaaaa ttaatttaaa       720
     ggattgccca tcctttaaaa attaattttg aggattgccc atcctttaaa acttaatttt       780
     tcggattgcc catcttttaa aattaatttt gaggattgcc catcctttaa aattaatttt       840
     gaggattgcc caccccttaa aacttaattt tttcgatatc aaatatcaac gcttaatgaa       900
     aatattaacc ccttcgcatg atttattaaa aaaaaaaaca ggtaaaaata aaattttgac       960
     gtgattaaaa tttctacctg ctgtaaaatt actattcaac aactggacga ttgttttttt      1020
     ttcgtttatt caatcttgca caagagagag cgagagataa aatactttcg cgtgaaatcg      1080
     tcaggcaggt gtcggaacga gacagatata ccagaaagaa gcaggcaaaa aaatcaagcg      1140
     actctgttag aaaagtgagc cagacagagt ggcgcgcgat cccaaatttt tgttgcaaat      1200
     tcccgatatt ggaattttgt ggattattgc gcctcactga cgccaaattt cagtggcatc      1260
     gtttttgtaa agttccgcga attgaaaagg acgaggacgt ctgggctgac atgctggcgc      1320
     caccgattaa tgcacgcata ggcgccagca aatcgtcgca caagtttgtg cctcgcgttt      1380
     agcgatccgt gaagaattac aacaacaatt ccactgaatt tttggtggca gagagtaatt      1440
     cggatcgcgc gccactatgt ctgacttgtt tgcaacatcg gcacttgttt ttcctggttt      1500
     ttcccggaat atctcgtacc aacacctgcc ttaaaaagtt ctccccaaat agtcgacctg      1560
     ttttgtgcaa gattgaataa acggaaaatt gcagtcgtaa aattgttgaa tggggatttt      1620
     tgagcaggta gcatgtttga accctttccg atcttgattt tgtacctttt tttaatgtag      1680
     acatttgttt ctatacaaaa ggggtattgt tttattgagc gatatttggg gtttttacat      1740
     aatangtact ttccgcaacc gtaattaggg aatgcacact ttttgacctg aaacacttgt      1800
     cctcatctag aaatcgattt cctcctcgat actcataaga ggtataaaaa gagacatccg      1860
     gaataaataa ttttttagtc nattttttgt gtgaacaggt gaagttaaaa agttgtgcgc      1920
     gattttaact acgcttgagc tgcaaaagtg gttgtgtaca ttgtgaagtg gcgttgcatg      1980
     aaattctaaa aaaatctntg ttactatttt tngtttttgg tttttgtatc cttgtaaatt      2040
     ttgtttacag tctttttaaa gacttgcaag atttacagtc tttttaaaga cttgcaaaaa      2100
     tttctttaaa gagaattttt taaactgtgt gaatttacca gatattagaa tttcatgcat      2160
     tgtcattagt tgtgtgttta tttctgtatt tgttaaaatt ttgtttnnag tggcatggca      2220
     cgaacattta aanaaaagtg tcattgtaan ttttatttag agtcttttta aagacttgca      2280
     agatttacag tctttttaaa gactgaattt ttttaaaccg tttaatttgt gtgaatttnc      2340
     gagatnntag aatttcgtga attgtcatna gttgggtgtt tatttcatgc gtttgtcatt      2400
     agttnngtat ttgttaaaat atttgttaaa aagtgaagtg gcgtggcact gaacgtctat      2460
     ctaaaaaaag tgtcattgta atattttttt gtatccttgt aaaccttttt tccagtcttt      2520
     ttaaagactt attaaatttt tacaagcatt tttgagccga ttagtttttt taattgacag      2580
     attttagatt ttcgtgccat gtcataagtg ttgtgatctt gtttgtttta aataaataaa      2640
     acaggaattt cancaccgtg gaaactgcaa gtattnttat attataagca tattttaagc      2700
     atttattttg atattttgtt taagttaatt taaggaaaga aagagattag gcatnatttt      2760
     catttttcta tttcccttgt ntttccnttn tgttacttaa tattacttaa tataaaaaaa      2820
     aacaaaaata taaaaaataa attacgtata cttttacatt gatattttat gtttgttaat      2880
     ttaaggaaan taatttttat tagagattag gtatttagca tacatttttt ttatttttct      2940
     tattttttcc ttgtgttatt ttattcttta atatataaaa aaaaaaaata tatataaaaa      3000
     ataaattacg tatactttta ttttgatatt ttatgtttgt taatttaagg aaagaaagat      3060
     attaggtata atttttatta gaaagcgcta tatttaatta aataataatt tatttattat      3120
     aagaaaaaac ttatgtttag cattaataat aaaacttctg tttgatttgt ttttattatt      3180
     attatttaag ttattataag gaaataaaga gattaggcat atgtttaagt tttttattcc      3240
     ttttattatt ttattactta atattaaaaa aaaaacaaaa atataaaaaa taaattacgt      3300
     atacttttac attgatattt tatgtttgtt aatttaagga aattaatttt tattaaagat      3360
     ttatttagca tacatttttt ttatttttct tattttttcc ttgtgttatt ttattcttta      3420
     atatataaaa aaaaaaaata tatataaaaa ataaattacg tatactttta ttttgatatt      3480
     ttatgtttgt taatttaagg aaagaaagat attaggtata atttttatta gaaagcgcta      3540
     tatttaattn attataagaa aaaacttntg tttagcatta ataataaaac ttctgtttgg      3600
     catttattaa taaaacttct gtttaattta tttattatta taattattta aatttatgtt      3660
     ataagttttt tattcctgtt caanttttta agtacttttg ttttttgagt acgttanggg      3720
     cgttaattaa tacatttctc acgtttatgt ttaatatatg tttaagtttt gttttctttt      3780
     atttttacgt atacggtttt taaatattta ttgagttgat tcaatctgaa gtgtttgtgt      3840
     tgtgtgttgt ttttgtttta attattgtgt actaagtgaa aatttaaaga tgccggccaa      3900
     gtcacaagtg gatgtgcccg ccttagtgga tgcactttgc agcgttaaca ttttcactga      3960
     aactggaact ttgaagccta gaggcgacaa tgtgtggatc gaagccagta attatttgca      4020
     aggcacaata agcggacaaa cactcaattt ctatgccagg attaatagga acaatataat      4080
     aactgtggtt aaagaacgac gtggaatgca gttggatagc actgctaata acacaattaa      4140
     caccacatta aataacacag cccctgaaga ggacccagag tacctgatcg accaggcntc      4200
     agaaaatgga ccgctgccca cnctatattt taacctggaa ntggacgaag aaacgtggag      4260
     atcgattgcc cctaaagcaa atncaaagaa gganttaaga tcccgnaatt atctgcaacc      4320
     caactggacg gataccatng ccatgttggt atataaaaaa attcccctnc catgtgcttt      4380
     caacttcaaa aaggcaaaaa tatcngaaaa ggtggataat atatggctgc aaataagggg      4440
     atattgcaat gagtgcagct cagttttaaa aggacattgc ctngtggagc cagatgagaa      4500
     ttgcggcatc tccataaaca taagtgtacc agacacacgc ggtattccac ataataaaaa      4560
     acggcgatgc acaggatcca gacgtgttga aatcggacag gagctaattt tgaaaaaagc      4620
     ggcgttatgg agaaaagaag cgaccaccag catgaataat gacgacccag agccaagctt      4680
     cattccgaag ttaccaactc tgcgcaaact tcgtgaagag gcaacgaaca gacacttggg      4740
     aatcaacaag gatcgggatc caatatcatc cttatacctt aaaaagtatg agggggaatt      4800
     ggctggatgc atactagata ttgggttaga tgaattcttc tgcatctact gcacaggagc      4860
     ccagataaag gcatacacat caagaataaa gancgtaaga anaatttcgg tcgacgctac      4920
     tggaagtgtt gtgttgccaa tattaaaacc gagtggagaa acaagttatg ttttttatac      4980
     caaattgtga tggagggcga cgacngcata tttcctgttt tccaaatgct gtcggccaaa      5040
     cacgacacag ccagcattca attttggctc agcaggttta tacaaaaaac cggacatttt      5100
     ccactggagg ttgtgtccga tttttctttg gccctattaa atggaataag cttgggcttc      5160
     aatgaatgcc gcctaaacag atatatatnt atacatgctt taaaaacata tcttcgaaag      5220
     annggaacga actgccacca tgctacattc ggcttgacat cgcccaccta attaaaatga      5280
     tatgcaggaa aaacatcttt aaaggaaaac tgccgaatgt aaaagatttt tacataagat      5340
     gtattggtgt ggcaacaact tgcgatacaa aggagtcatt ttcagaaata ataaaatcta      5400
     tgttaattgt tgcgctgagc caatcctcgg gagaagatga aactggagag tacctcccga      5460
     gctattggaa tgaaaagtat ctgctcacca gaatcgcaaa ttttagtgct ctggatcatg      5520
     aggaaaatat cgatgataac tatgtaccgg aagaaaacga ggaaatagac gaggacatta      5580
     tcgttttcat cgctaatatc caaagatgtg ccgaagaaga agcggtaaag tgcagttcag      5640
     tccactgccg gccgaatccg tattatttgc ctgagctgat gccacctctg atcaaattgt      5700
     gcagatattt tgttttgtgg accaacgtaa tgaaggacaa attctgctcg atgtatgacg      5760
     ttggctcttc ggcactggtg gaagcatatt ttaaggatct gaaaaacacg gacatgtcga      5820
     ttttccaccg accagtgcga gccgataaat ttgtggtcca gcatattcgc tgcattgaag      5880
     ctgtctgcaa actagagcga gctgccacaa aacggaaaac cttaaaaatt cccggtttta      5940
     ttcaggaaac ctccactagc aagaagtctc gaaatgaaag agaggggttc ctggaggaaa      6000
     tgcttaatga aagcgaagtg gaccaccttt tgcaggaaga gaactggaag gtgaagaaca      6060
     aatcttttaa atcatcgaat tcttatgtcg atgaagacga tcaaaataaa aatatttcgc      6120
     agacagtgga tttgtctaaa cccaagaagg aaatggaatt gattgaaaac tcaaagccaa      6180
     ggggtaaata tctcaggaaa tgtcctaatg tcgaattaat ttataatcgg cctcatcgac      6240
     ggaaaaggga cgaaatatta cgtaatggtg gcgtactggg acctgtcagg attggaaatc      6300
     agctatatca gttcaaaaat acttgtccct ttgattctat ggtggaaata ttaacgacgg      6360
     cttacataga taactttttt tataaggatc aattggatag ctacccccct gacaatttaa      6420
     cnatagaatt ggttaaaaaa tatgccgtcg agggggtttc gtctagccta tactctgaca      6480
     ggggactggt tctgaaaagt tttttcaatg aaaaacacca ggtcgtgcaa cgcgacgcga      6540
     atataggcac ttttattgac caatccctaa atggaatacc gagttcgtcg actcataagt      6600
     cacataaaac cagggagagc aatgattgcg aaaaccatgt atctctccac catcggctgg      6660
     aactccagac atatgccgaa gaagtngacg aacttggcct taacgatgta ctgctctcct      6720
     ttgttagaaa attctttgag aaaactgaag aaacatgcaa taaatgtggt ggccaacaga      6780
     tcctggaaag agagccagga ccacatgtta ttantgatat cgaatttgca atggagttcc      6840
     atcgaacaaa atatttgggc acaccaggaa cggcatcatt acaacaatta ccatctgaaa      6900
     ttttaataca ggataaaaga tacattttaa gtggtgccat agaatttatt tctgcttcag      6960
     atggtggaat cggacattac attccatatt gccgcagaat aactggatcc tgggaagttc      7020
     agaacgatat gtgcaggcaa tggcggaaat ttacatcctt aaataccaaa atgacactcc      7080
     atattataat attcacgcaa acaaaataat taagttattt ttaagaaatt aactattaag      7140
     aaatttgttg ttaaaattta ctagtaataa aacgaaaata aatgttagtg aatgtgtctt      7200
     ttaatacaaa taatttgttt gttgtgtttt atttattttc aaggggcggc ggtgggcaaa      7260
     cgcttattta attttaaggg gcgtgaaaac ggatgggcaa tcctcaaaat taatttttaa      7320
     aagatgggca atcgttaaaa ttaggtttta aaggatgggc aatcctnaaa attaattttt      7380
     aaaagatggg caatcgaaaa aattaatttt aaaggatggg caatcctcaa aattaatttt      7440
     taaaggacgg gcgatcgnna aaattaattt ttaaaggatg ggcaatcgta aaaattaatt      7500
     ttaaaggatg ggcaatccta aaaattaatt tttaaaggat gggcaatcct naaaattaat      7560
     ttttaaagga tgggcaatcg ttaaaattaa tttttaaggg atgggcaatc aaaattaant      7620
     tttaaaggat gggcaatcct tnaaattaat ttttaaaaga tgggcaatcg tnaaaattaa      7680
     tttttaaagg atgggcaatc ctttaaaata nttttaaggg gtgggcaaac gtttttttct      7740
     aaaaatattc agttttcgga tgtgggcaat acattattct ttggtaaaac agagcaattt      7800
     tttaaagtgt catatctcct aaagttgaaa aaatttcaaa attctaaagg gtgggcaaac      7860
     gtgggcaaac gaagttattg cgatttccaa aaaaaaattt tgaaaaaagt caaatttttg      7920
     aagttcgaaa attttcgaac tttttcgaat tttcatatct tcaaaactgg acgtgggcaa      7980
     aaaaaactaa ttggtgggca aacatgggca aacgatgggc aaacgattcc agctttcaaa      8040
     tttcgaaaaa aaatttttcc gaacctggct tctctgagct                            8080
//
ID   MuDR-1_DT   repbase;    DNA;    INV; 6576 BP.
XX
AC   .
XX
DT   26-DEC-2011 (Rel. 17.08, Created)
DT   26-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila takahashii genome: long
DE   terminal repeat.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-6576
RA   Jurka J.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1440-1440 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2364..4280,4302..4904)
FT                 /product="MuDR-1_DT_1p"
FT                 /translation="MEASNNLQGTISARALNLYARVNRYNILTTVKQRCGI
FT                 SEANNTANNSTLNSTAPEDDPEYEISEPSKNGPLPILYLNLQLDEEAWRSI
FT                 APKAQQKKDLRSRNYLQPNWTDIIAKCVYEKVPLPCAFNFKKAKISDKVDN
FT                 IWLKIEGYCSECSSILKGHCLVEPEEQCGISISVSVPDTRGIPHNKKRRCT
FT                 GSRRIEIGEELILKKAALWRKEATKDMKDDDPEPSYIPKLPTLRKLREEAT
FT                 NRHLGITKDRDPISSLYLKKYEGELAGCILDIGLDEFFCIYCTGAQIKTYT
FT                 SRIRSIKKISVDATGSVVLPIVKPNGXSSYVFLYQIVMEGDDSIFPVFQML
FT                 SAKHDTASIQFWLSRFISKSGQFPLEVVSDFSLALLNGISLSFNECRLKTY
FT                 ISKCFQNIXSEDPTELPRCFIRLDIAHLIKMMCRKNVFKGKLPNVKDFFIR
FT                 CIGVATTCETKETFAEIIKAVLIVALSESSGEDESGDYLSSHRNEKYLLTR
FT                 IATFTALDHEENEDNVYLPEELEETDGDVSDFISSIKNKAEDEASKCNSAK
FT                 CRPNPYYLPELMPPLLKLCQYFVLWTNVMKDKXSSKNNVGSSALVEAYFKD
FT                 LKNTDMSIFHRPVRADKFVVQHIRCIEAVCKLERAAMKRKTRNNQLKKIRK
FT                 EKGVLEDMSDESDVEYLLKEENWKVKNNTKNPSDYNVKEDEENENIYQTMD
FT                 LENEYEESKHRPRGKYLKKCPNVELIYNRPHRRQRDEILHNGGAMGPIWIG
FT                 NKLIQFKNTCAMDSLVEILSTAYMDNYYYKNKLDSNTDNLTVALIKKYAVE
FT                 GISASLYCERGLILMSFFEEKTTPYCAXQISEHLLTKL"
XX
SQ   Sequence 6576 BP; 2183 A; 1080 C; 1273 G; 1990 T; 50 other;
     agctcagaga agctgggtcg ggtaaaatga caaattcgaa ttttgaaaac gggawtcgtt        60
     tgwccmccat ttgwccactt ttgcccaccc tttagttttt ttgaccacgt ccagtttcga       120
     aaatatcgaa tttcgaaaat tttcgaaaat caaaaatttg aatttttcaa atttttttgg       180
     tggaatcgtt tgtcccccat ttgtccactc gttgtccacc tttcagaatt ttgaaaaagt       240
     caaaactttg gaaaatataa cacttttcag tttttactaa atttcgaaaa attaaagtcg       300
     aatttttcaa aatttttttg gtggactsgt ttgacccccg attggccact tgtgtccacc       360
     tttcagaatt ttgaaaaagt caaaacttta gaaaatataa cacttttagt tttcactaag       420
     tttcaaaatt aaagttgaat ttttcaaatt tttttgatgg acatcgtttg tccaccgatt       480
     tgtccacgat tgacaccttt tagaattttg aaaaagtcaa aactttggaa gatataccac       540
     ttttaagttt ttattaagaa aaaaattggt tacatttttg aacatctctt aaaatagtca       600
     attagattgc acacttctta aagtaattaa tccaccagca gtcaattatt ggacaccttt       660
     tctcacctaa gattaaagta gtttgattcg acatgggtta tgcaaaacag gtaaattcaa       720
     catccaaatt tctgaatgga gaattttagc aggtagttag ttaactattg gaaatatttt       780
     taaacctgaa tggctagtct gtttttgggg tttgcaatgt cgttacctgt gagaaagggt       840
     taagattttt taggatactt tttaggggtt ttacgtaaca ggtatatacc gcaacctgct       900
     tcaattttaa acctgaaaca cttgtctcga tttggaaatc gctttcctcc tcgaatctca       960
     taataggtat aaaaaagggc acccagaaag caccattagt ctatttttgt gtgaaaagtg      1020
     aagtgaaaag ttgtgcgcga tatttgaaaa cgcttgcagt gtaccagaac tattgtgaat      1080
     cgtgaaataa agcgaagtgg cattgtacga aattctgcgt tttgtgtttg tgcatccttg      1140
     ttaattttgt taagagtctt ttttaagact tgcaaaattt tcaagtttga ttagtgattt      1200
     tataaattta aaattgtttt gataccagaa tttcgtgctg tgtcataagt gttggtgcat      1260
     aagtgtgatc agtgttgtga atattccttc gttttgttcc acaagaaata cgagtgaagt      1320
     ggcgttgcgc aaaattctga gatattccct gtcattgtgt tttttgtttt ccgaattctt      1380
     tgaatttagt ttacagtctt tttaaagact tgcgattttc aaatttgttc tttaaatttt      1440
     gcacatttat ttgattttat tctttacatt gcgcttgctt gtgatatttg tttacattcg      1500
     ttttaaaact tgagaatttt ttaaatttaa aatcattttt tcttcagaat atttacaact      1560
     tgtgtgagtt tagattaaaa aaattgcgaa ttttattttg tctctttgag atttctttta      1620
     aatacgtaat taaatataaa tttctgattt tttttttaac ttttaataac tgacccgata      1680
     tcagaattwc gcgcctcgtc aaatttgctg tttttacagt gtagtgcgat aaaaagaaac      1740
     ttactggact acaactggaa aactgcaagt ataccacata catttcttta tcttttaata      1800
     tattttacct ttaacacata agaacacaat ctttttaaag acttattctt gtatttataa      1860
     aataagttta atttttatta ttttaataat aagttgtctt ttaatttatt tttttctctt      1920
     taaattcata aacaaaaacg actaaaaaat atacaagtaa aaatagatct tgattaaact      1980
     aaatatattt ttgatttaaa acaaagtatt gtaagaatat aaktcatact ttgttctcat      2040
     ttttktattt aagcttaagg tatttcaatt ttgataagtg cgttaactta tttawatatc      2100
     catttcgtcg cgaaggatat wacaatttag ttaaggtata ctaatattac ttaaccttta      2160
     amatttattt ggtgtacagt gmaaamgwgc aaacagtwcc twaaaacwgt ttaaacatwk      2220
     cwaagaktgw wgtgaataat taaattatct aacacgatgc cagccaagcc ccagttgatg      2280
     tcaccaccat agtgaatgca ctttgtaatg ttaatatttt taccgaaaac ggaactctga      2340
     agccgagaag tgacgatgtt tggatggaag ccagcaataa tttgcaggga acaatcagtg      2400
     ccagggccct aaatttatat gcccgagtta atcgatataa tatactgact actgtgaaac      2460
     aaagatgtgg catatcggag gcgaataaca ctgcgaataa cagcacctta aattccacgg      2520
     cacctgaaga tgatccagag tacgagataa gcgaaccatc aaaaaatgga cctctgccca      2580
     ttctttactt gaacctgcag ttggatgaag aggcatggag atcaattgcc cctaaggcgc      2640
     aacagaaaaa ggatttgcga tcaaggaact atctacaacc taactggacg gatattatag      2700
     ccaagtgcgt gtatgaaaaa gtgccacttc cttgtgcgtt taattttaag aaggccaaaa      2760
     tttcggacaa agtggacaat atatggctaa agatagaagg atattgcagt gagtgcagtt      2820
     caatattaaa aggacattgc cttgtggaac ccgaagagca gtgcggtatc tcgatttccg      2880
     tttcggtacc agacacacga ggaattccac ataacaaaaa acggcggtgc acaggatcca      2940
     gacgaattga aatcggggaa gagttaattt taaaaaaagc ggcattatgg agaaaggaag      3000
     caaccaagga catgaaagat gacgacccag agccgagcta catcccgaag ctaccaactc      3060
     tgcgaaaact tcgtgaagag gcaactaacc ggcacctagg aatcaccaag gatcgtgatc      3120
     caatttcaag tttatacctc aagaagtatg agggtgaatt ggctggatgc atccttgaca      3180
     tcggactgga cgaatttttc tgcatttact gcacaggagc ccaaataaaa acatatacct      3240
     caaggatacg gagcatcaaa aaaatttcgg tcgacgcaac tggaagcgtt gttttaccga      3300
     ttgtaaaacc gaacggagaw tccagctacg tgtttttata ccaaattgtw atggagggag      3360
     acgacagcat atttccggtc ttccaaatgc tgtcggcgaa gcatgatact gccagcatcc      3420
     aattttggct gagcagattt attagtaaat cgggacaatt tccactggag gtcgtgtcgg      3480
     atttttcctt ggcgctactc aatggaataa gcttgagctt caatgaatgc cgcctgaaga      3540
     cgtatatttc gaaatgtttc caaaatattw catcggagga cccgacggaa ctgccgcgtt      3600
     gcttcattcg gcttgatatc gcccacctta ttaaaatgat gtgccggaaa aacgttttta      3660
     aaggaaaatt gccgaacgta aaggattttt ttattagatg cattggagtg gcgacgacat      3720
     gcgaaacgaa ggagaccttt gcagaaatta taaaggcagt actcatagtt gcattgagcg      3780
     aatcctctgg agaagatgaa tcaggagatt atctttcgag ccacaggaat gaaaagtatc      3840
     tgctcacccg aatagccaca tttacggctc tggaccatga ggaaaatgag gataacgtat      3900
     atttaccgga agaattggag gaaactgacg gagatgtttc ggatttcatc tccagcatta      3960
     aaaacaaggc cgaagatgaa gcgtcaaagt gcaattctgc aaagtgccgg ccaaacccgt      4020
     actatttgcc ggaattgatg ccacctctcc taaaattgtg ccagtacttt gtattatgga      4080
     ccaatgtgat gaaggacaaa ttmtcatcaa aaaataatgt cggctcatct gcactggtgg      4140
     aagcatactt caaggatctt aaaaacacgg acatgagtat attccaccga ccagtgcgtg      4200
     cagataaatt cgtggtgcaa catatacgct gcatcgaagc tgtgtgcaaa ttggaacgag      4260
     ccgccatgaa gcgaaaaact taaaagttcc tgaattcata aaggaacaac caattaaaaa      4320
     aaatccggaa agaaaaagga gtcctggagg atatgtctga tgaaagcgac gtggaatacc      4380
     ttttaaaaga ggaaaactgg aaggtaaaga acaatactaa aaatccatcg gattataatg      4440
     tcaaagaaga cgaagaaaat gaaaacattt atcagacaat ggatttggaa aacgaatacg      4500
     aagaaagcaa acatagacca agaggaaaat atctgaagaa atgccctaac gtcgaattaa      4560
     tttacaatcg acctcatcga agacaaaggg atgagatctt acataatggc ggagcaatgg      4620
     gacccatatg gattggaaat aaattaatac aatttaaaaa cacttgtgca atggattctt      4680
     tagtggaaat attatcgacc gcatacatgg ataattatta ttataaaaac aaattggatt      4740
     cgaatacgga taacctgaca gtggctttga taaaaaaata tgccgtcgag ggaatttctg      4800
     ccagcctcta ctgcgaaaga ggtctgattt taatgtcatt ttttgaggaa aaaacaacac      4860
     cgtactgtgc samacaaata tcggagcatt tgttgaccaa gctctgaacg gaataccgag      4920
     cgcaacaagc cgccgttcac ataaggaagg tgccamgaac gagtgcgaga gccacacatc      4980
     aacacwccaa cggctggagc taatggactc agaaawggtc aaggatctcg gtgttgccaa      5040
     ggcgttgctc acctttgttg gcgaatwttt tgaagaatcc gaagaaatat gcagaagatg      5100
     ctacggagaa gagatcsttg aaagagatcc aggwcctcat gtcataatag acatagaatt      5160
     tgcgacgsat agtgcsttcc atsaaaaawc cwcagccggc tcaacaggat ctgcaacmtt      5220
     gctccagata ccgcaggaaa tagwaataca gaatagaaaa tacattctga gcggtgccat      5280
     tgagtacgtc ccggcacaag gatctggaat cggacattat atttcatatt gccgaagagt      5340
     aacgggatct tgggaagttc acgatgatat gtgcagacga tggcgaaaat tcactgcgta      5400
     cacaacgaaa atgacattcc atattgttat atatacgcag gccgagtgat acatattaag      5460
     tttaaatatt ttgtaatttt taaaatgtat aaatgttcca ttgcttaaat aaaatttttt      5520
     tgtgattttc acaagacctt gttttatttg aaacactaat tttaagcaat ttttaattgt      5580
     aaaccaaatg tatttttaag gggtgggcag tgaatatttt ttagttttaa gaggtgggca      5640
     aacgtttgtt tttataaaaa tgtattttta aagggtgggc agtgaatatt ttttagtttt      5700
     aaggggtggg caaacgtttt tttccaaaaa tattcagttt taaggggtgg gcaaacgatt      5760
     ttttcttaag gacaaactta taattaaaat gacttttaaa gtataatttt ttcaaacggt      5820
     gggcaaacga ttcctgcaaa aaaatttgaa aatttcagct ctaaagtwtt tgamattcgt      5880
     gaaaacgtaa aattgttgta ttttctaaag ttttgacttt ttcaaaattc taaagggtgg      5940
     gcaatggtgg caaatggsgg kcaaacgaat ssacaaaaaa attttgaaaa attcgacttt      6000
     aaaattttcg aattttgagg aaaacgwaaa agtgttgtat cttccaaagt tttgactttt      6060
     tcaaaattct aaagggtggg caatggtggt caatcggggg tcaaacgatt ccacgaaaaa      6120
     aagttttgaa aaattcgact ttaawatttt cgaaattcgg tgaaaacgaa aaagtggtat      6180
     atcttccaaa gttttgactt tttcaaaatt ctaaagggtg gtcaatcgtg gacaaacggt      6240
     ggacaaacga ttccacgaaa aaagttttga aaaattcgac tttaaatttt tcgaaattca      6300
     gggaaaacga aaaatcgtat atcttccaaa gttttgactt tttcaaaatt ctaaagggtg      6360
     ggcaatcgtg gacaaacggt ggtcaaacga ttccacgaaa aaaattcgaa aaattcaaat      6420
     ttttgatttt cgaaaatttt cgaaattcca tattttcgaa actggacgtg ggcaaaaaaa      6480
     actaaagggt gggcaaacgt gggcaaacgg tgggcaaacg attcccgtat tcaaaattcg      6540
     aaattttcat tttactcgac ccagcttctc tgagct                                6576
//
ID   MuDR-1_FoCa repbase;    DNA;    INV; 6284 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-6284
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2469-2469 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 9-bp TSDs. 607/642-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           930..3842
FT                 /product="MuDR-1_FoCa_1p"
FT                 /note="ribonuclease E and PHD finger."
FT                 /translation="MKFSKADMNKAHNNTVSFCEKEFWTAFLREERVPHEL
FT                 CRGFFLKMAEFREETNPPKRRRAAQEIVSEHVPLYATTYDPHAHTEDTQAE
FT                 DVPHAQTEEAQAEDVPRAQTQDTQAENAPHAQTEETQAEDVPHAQTEDTQA
FT                 DQVEFVHVVVLEDEPIAHDGQIFVNQADLVSELGIEQRQADDAPHAHTENI
FT                 QVDLVQLITTALLEHVGVAQDEQILVTQTEPVQTEHAHKDLPEESFGAQAE
FT                 GLQDVQAEHARLVLNKSPVIHRPFHPEHGTARRLTRRSPKPSKRYPTAEYY
FT                 VPRKTRSVKESWCNCGVRGDDHLPAVECDGCGKWYHYQKDGVGKNHCDYKE
FT                 SNEWYCLECRDAAETDKNDSIEKDGNDDLDSENGDQNDGNDDVQKFDDDTY
FT                 TEKHDGPENDANGGSEADMQNNEEDAQETSYQFDHQTWSADENETVRVHAP
FT                 LADVQLDVDTVCTVLGISQEELNYIPPKKMTVIFSPNEVSKFFDYKTSKFV
FT                 ENKIRGDVISQKLREAGILCRFKNRREPYYYSERKKDQPFARQEGYCSCGI
FT                 KFQVTFPCKPIQGEALETTLESFGVFTLVQGKRTSRPITGIEREKLSNQLS
FT                 TTSAAKIFLTDLSHVKGLELLHKSVPPSADALRTVKSESKGKVRLASNIFD
FT                 DLRLLKNHYQTSHNANATICGYIQDFNLDAKLFRLDLFDQQSIKLFTDTIS
FT                 REYVIVGIDATGGILKPLPRDALYPSNDPAEKTHRNKRNSLLLYTIVAQTK
FT                 QGSFIVADSVLMRGQSNDIAGPLTSIKRGVKKLRPYQTKSAPDVICTDFNF
FT                 AMLHAVSEGYNTMKLEEYLKKSYAVLKNEDTFAGDTACIQLCASHLTKSFL
FT                 DNVRKKTVGHKFRNEIVDASVRGLAKLQEASTLNDVEIAMKDICTLFGKEK
FT                 MSPEDVQHNLARIKSISLEEWVDGDVIVDDYAGPDEEEVNASRLLREKSPF
FT                 YHTFQKIRRIEEKHVN"
XX
SQ   Sequence 6284 BP; 1997 A; 1381 C; 1377 G; 1522 T; 7 other;
     acgtctgtga agctgtacct gggtttgagt gcactgctgc cgcccaccgt ccagcttcct        60
     accgccaacc gccgcctctc ttcctacccg cagatgccac ttccaaaaaa ccttgtacat       120
     cgacttctct aacccttcgc cgtactataa taccccaaat tgttaatttt actctaaaat       180
     actcaagaaa tccagaaaac taactaacaa actaataaaa tagtccgcat aggttcctag       240
     agcgggattt caaactaccg cctccatgct cacatatgtt accgaccgca cccccggtca       300
     tcacttaatg cggacccgca cccgccagat mcctctggtc aaaattacca agccggtaaa       360
     agtcatactt ggactttttg ctaattttgt ttgtcgccgt ttcctacagc gggatttcaa       420
     actaccgcct ccatgctcac atatgttatc gaccgcaccc ccggtcatca tttaatgcgg       480
     acccgcaccc gccagatccc tctggtcaaa attaccaagc cggtaaaagt cattacttgg       540
     astttttgct agtttcggst ttgtckcmgt ttcctmmagc gggatttcaa actaccgcct       600
     ccatgctcac atatgttatc gaccgcaccc ccggtcatca tttactgcgg acccgcaccc       660
     gccaaatccc tctggtcaaa attaccaagc cggtaaaagt catgacttgg actttttgct       720
     aattttgact ttgtcgccgt ttcctacagc gggatttcaa actaccgcct ccatgctcac       780
     atatgttatt gaccgcaccc ccggtcatca tttaatgcgg acccgcaccc gccagatccc       840
     tctggtcaaa attaccaagc cggtaaaagt cataacttgg actttttgct agtttcgact       900
     ttgttgccgt ttcctacaag tcgtccaaga tgaaattttc caaagcagac atgaacaaag       960
     ctcataataa tacggtatcc ttctgcgaaa aagagttttg gacggcgttt ctgcgagaag      1020
     aaagggtgcc acacgaactc tgtcgaggat ttttcctcaa aatggcagag tttcgtgaag      1080
     agacgaaccc tccgaaaaga cgtcgagcgg cacaagaaat tgtgtccgag catgtcccat      1140
     tatatgcaac cacctatgac ccccacgccc atactgagga cacacaagct gaagacgtcc      1200
     cccacgccca aactgaggag gcacaagctg aagacgtccc tcgcgcccaa acccaggaca      1260
     cacaagctga aaacgccccc cacgcccaaa ctgaggagac acaagctgaa gacgtccccc      1320
     acgcccaaac cgaggacaca caagctgacc aagtagaatt tgtccacgtc gtcgttcttg      1380
     aagacgaacc catcgctcac gatggacaaa tcttcgtaaa ccaagccgac ctcgttagcg      1440
     aacttggaat tgagcaacgc caagctgatg acgcccccca cgctcacaca gagaacatac      1500
     aagttgatct agtacaactt atcacaaccg cgctactgga gcatgtcggc gtcgcccaag      1560
     atgagcaaat cctcgtaacc caaaccgaac ctgttcaaac agaacacgcc cacaaagacc      1620
     tacctgaaga aagctttggc gcacaagctg agggtctcca ggacgtccaa gcagagcacg      1680
     cccgtttagt attaaataag agccccgtga ttcatagacc ctttcatcca gaacatggca      1740
     cggcaaggag attaaccaga agaagcccaa agccttcgaa gcgctatcca acagcagaat      1800
     actacgtgcc acgaaagaca agaagcgtaa aagaaagctg gtgcaactgc ggagttcgtg      1860
     gggacgacca cttgccagcg gtagaatgtg atggatgtgg taagtggtat cattaccaaa      1920
     aggacggagt cggaaaaaat cattgcgact acaaagagtc caatgagtgg tattgtctgg      1980
     aatgtcggga tgcagcagaa actgataaaa atgacagtat tgaaaaagat gggaacgacg      2040
     acctggattc tgaaaacgga gatcaaaatg acggcaacga cgacgtacag aagtttgatg      2100
     atgacacata taccgaaaaa cacgacggac ctgagaatga tgcaaatgga ggttccgagg      2160
     cggatatgca aaataacgag gaagacgcac aagaaacctc ataccagttc gatcaccaga      2220
     catggtcagc cgacgaaaat gaaaccgtac gagttcacgc acctttagct gatgtacaac      2280
     tcgatgtgga cacagtttgt actgtccttg gcatttctca ggaagaactg aattatattc      2340
     cgcctaaaaa aatgacagtt atattttccc caaacgaagt ttccaaattt tttgactaca      2400
     aaacctcaaa atttgtagaa aacaagattc gtggggacgt tatttcgcag aaacttcggg      2460
     aagctggcat cctttgccgt tttaagaata ggcgggagcc ctattattat tcggaaagga      2520
     aaaaagatca gccattcgct cgacaggaag gatactgctc atgtggaatc aaatttcaag      2580
     taactttccc atgcaaacca atccagggag aggccttgga aactaccttg gaatctttcg      2640
     gagttttcac cctcgtccaa ggaaaaagga cgtcaaggcc aatcacgggg atcgaacgag      2700
     aaaaactatc aaaccaatta tcaactacat cggcagcaaa gatatttctc acagacttga      2760
     gccatgtgaa agggctcgag cttttacata aaagcgttcc tcccagtgca gacgctctac      2820
     gaactgtgaa atcagagtcc aaaggaaaag tcagactggc ttctaatata ttcgacgact      2880
     tgaggttgtt gaaaaatcac taccagacaa gccacaacgc caacgccaca atttgtggtt      2940
     acatccaaga ttttaacttg gatgcaaaac tttttaggct ggatcttttc gaccagcaat      3000
     caataaaatt atttacggac acaatttcac gagaatatgt tattgtggga attgatgcga      3060
     caggaggtat tttaaagccc ctcccacgag atgccctata tcctagcaat gatcctgctg      3120
     aaaaaactca caggaacaaa aggaactcat tgttattgta cactattgtg gcgcaaacga      3180
     agcagggaag cttcattgtg gctgacagtg ttttaatgcg aggtcaatcc aatgatattg      3240
     cgggtcctct tactagcatc aagcgaggtg tgaaaaaatt acgcccatat cagacgaaga      3300
     gtgcccctga tgtaatatgt accgacttta atttcgccat gcttcatgct gtgtctgagg      3360
     gatataacac aatgaaacta gaagaatatt tgaagaaaag ttacgccgtc ctcaaaaacg      3420
     aggacacgtt tgctggagat acggcgtgca tacaattgtg tgcatctcat ttgacaaagt      3480
     catttcttga caatgttcgc aagaaaaccg ttggacataa atttcgaaat gagatcgtgg      3540
     acgcgagcgt gcgagggtta gccaaattac aagaggcgtc aacgctaaac gacgtggaaa      3600
     tcgccatgaa ggatatatgt accctatttg ggaaggagaa gatgtccccc gaagatgtcc      3660
     aacacaatct cgcgcgaatc aagtcaattt ctcttgaaga atgggtggat ggggacgtta      3720
     tagtggatga ctatgcagga ccagacgagg aagaagtaaa cgcaagtagg ttattacgtg      3780
     agaagtcgcc attctaccac acttttcaga aaataagaag aattgaagaa aaacacgtga      3840
     attaggatgc agagttgaac ccattttaca atcctgctgt gctgaacgtg tttgaaaaca      3900
     catacgcccc atacgttgga attttcgcac gtggagttgt gcagcaaacc aagaacgcca      3960
     actttgtccg ggcaacgaat ggatcatgtg aatcagagtt tcggctatta aagcaaaatc      4020
     ttatcgtgga accggaaaat gtcgccgact ttgttcggca tcgctttgaa attacaaatg      4080
     gtaaaaacaa aaaatttgta ttcgacaatc taccaaagaa accagcaagc aaagaagcta      4140
     agctagttac aaaaacgctg caaaatgacg acgaaatcga acgtggagat attccaaagg      4200
     gactaattca agaagaagtt caagaatgca aggagacatg gagcaaaaga aaaaaaggcg      4260
     aacgaaaaaa tagatattta cataatagga ctgagcttac caagcttgac gaggagaagg      4320
     caagagagaa tgcaagggtt caaaagattg ggagagacag gtcttctcaa ccccttcaac      4380
     aagttcttac tctgaacaat caaaataatg tagcacgaac tatggatgga tgtttggaga      4440
     ctcggtaatg tagtatttaa tatttaaacg aactttaata accgtttgat agcgtattct      4500
     acaaaaatgc ccgactgaaa gatgttttat tctagtctaa atactaattt attcctatac      4560
     aaattcggga aaaataggca aaggcgtaat aaaacatccg cggaagaaga ggagactacc      4620
     acagctaacc tggagtcaaa gttcaggaaa atagtctcgg acattctgac ggatcagcaa      4680
     gggaattctg gtctgattag cctaactgaa tttttgcaaa catttattac caaatttctt      4740
     ataacagtta taacaataaa aatctcttat attcttagcc aagcaatcgc tgcggaagca      4800
     agttttgggt gaagaatttg tcacccagga gaaacaacaa tatcagcgat ataagtaact      4860
     tgcaaataca taataatatg gacgatgaat ttaattgtaa ttattgtaca gaatcgttga      4920
     gaatcttact gaggattcac tcatgatggc ttactccaac attaaagaag acataatgga      4980
     actttacgtg gccaatcggg atgaatttgt cggcggctac aaatgtgctc gacaaaaggt      5040
     cgctaaattt tcccagctat ttaactagaa cctgatatag taatattcta atacattatt      5100
     tacgcagatg tgggtggaac gaaagccaaa cttttctgga aatttgcagc aaatggtggt      5160
     atcatatcca tttaccacaa aatcttgctc taagatatgt tccacagttt cctccgatat      5220
     ccaaaagctt aaaaacatct ctgctctagg atttgaagta tcttgacaat gattatttca      5280
     caatttacat ttaaagaaat tatgtattat gtattcttac tatatattct tatttcagga      5340
     cattttacaa gtaacaaccg ttctgcttcc cgaaacactg gagctaattt actctgatgt      5400
     cttgaaaaca ccacttcacc aagcaagaaa agagctttcc aacatctcgc catttgacta      5460
     acttgataag cttataaatt taagttatac gaatctatac tacatgttca ttattgagaa      5520
     tcaaagtaaa actaaggaag aaggcaaaag taactctgag tttatttata tggatccgat      5580
     gcatctggag ggtgcgggac cataccaaaa gatgaccagg ggtgtggtcg gtaatacatg      5640
     caagcatgga ggcggtagtc tgaaatcccg ctgtaggaaa cggcgacaaa cccaaaatta      5700
     gcaaaaactc caagttatga cttttaccgg cttggatatt ttgaccagag ggatctggcg      5760
     ggtgcgggtc cgcattaaat gatgaccggg ggtgcggtca ataacatatg taagcatgga      5820
     ggcggtagtt tgaaatcccg ctgtaggaaa cggcgacaaa gtcaaaatta gcaaaaagtc      5880
     caagttatga cttttaccgg cttggtaatt ttgaccagag ggatctggcg ggtgcgggtc      5940
     cgcattaaat gatgaccggg ggtgtggtca gtaatatata caagcatgga ggcggtggat      6000
     tgaaatcccg ctgtaggaat ctatgcggat tattttgtta gtttgttagt tagttttcgg      6060
     gatttcttga gtattttaga gtaaaattaa cattttgggg tattatggta cggcgaaggg      6120
     ttagagaagt cgatgtacaa ggttttttgg aagtggcatc tgcgggtagg cggtaggaag      6180
     ggaggcggcg gttggcggta ggaagagagg cggcggttgg cggtaggaag ctggacggtg      6240
     ggcggcagca gtgcactcaa acccaggtac agcttcacag acgt                       6284
//
ID   MuDR-1_LHu  repbase;    DNA;    INV; 4558 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   MuDR-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4558
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 377-377 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..3752
FT                 /product="MuDR-1_LHu_1p"
FT                 /translation="MPRAAKFPVEVIFDSVKDLMFFNDTGELKPLSQNVWN
FT                 DAIVKMRNEMSVKHMYLYISRNDHKIQDMLRKWHGIERNTEISISEKDCSA
FT                 NSNWSMNTSHESLPPLRVTLTISGDDWNNIVDVSYKSRNYKVLRQGWTDVL
FT                 QEQLWREYKLPCCYAFKNPKVNENPGEPYLWIKGSCTECRVGINLYALDKP
FT                 TEDGLTLQISTSDTKNIEHKKKRQLRGKNRKRIAKEITAQSTYAWRRQKAY
FT                 ELMEFGDKIPAHLYSEDVLRKAKQTESDRELGLCKGIDLQESVRELKYRPE
FT                 FVGTIREIGNDKFFTMYWSPEQIFLYKKHCKDTSKTGSLSIDATGSIVRKI
FT                 TKPDGSSSIIYLYQGVIPFHTKILPVVQMVSEKHDANILTYWLREWLRSGV
FT                 PCPTEIVTDYALALLNAASLAFETIDLNTYVNRCFAVAEGSSSVMKPRCHI
FT                 RIDIAHLIKLVTRWKCFLNTHTRVKEFFLRCIGLLAKCTTFERFESLLRDI
FT                 LIVAFSETEDVSSNNGCFAAQKRLIQNIKSVNETEFIEEIDAIIEKKINSE
FT                 NDSKDDSAVNLDLETFEFDATGKLNTFLQKLENCKWQTAQTNYQPNPYWCP
FT                 NFANNLLRITKHFTLWTCILALNGSTATSSRSEEYFRELKHLVLSGDRNLR
FT                 VDKFLIKHIRSISGTEKLLNTACESITDKSEVTITANKNSKFDMSTYENLK
FT                 SNATSKFSKTSMKLDSVSKSYEIEKLDDSTLNQTIEEADITKSFEETYSFL
FT                 HEEENWGGKNLPKKRNAVQSPTDNVLDELKPDTSLLKNTIKRGKYLTPCPD
FT                 IQSILVKPNKNANLPLLKNGQLLGRVRIAKKNVTFYNTCSFDSIAQSVLAG
FT                 YRDWANYHNYITVSKNEFYDFVRTFSTYGATIETYKKRSMLLSNMFAVQNN
FT                 QIDCHFNLSNLVSQKLLTDEPSYQISQQCRNCNRNIIDIRPVIDINTKPFY
FT                 EKSMQALESYINEKLSDVFYKNCIRCGCNNIISKVSSGNHLFIDIECLQWL
FT                 KLAANMGYENWSGLFTISQISSRLVVRKLNYTLISAIEYIGTTDPKYIGHY
FT                 VAYIRRITGRWEVHNDLCAAKKPILMTTRALLEKKKLAMLMYVKQT"
XX
SQ   Sequence 4558 BP; 1650 A; 822 C; 849 G; 1237 T; 0 other;
     agaatcgttt gtatctattt atacttcttt ttattttgtt tgtaccgatc tggaagtata        60
     gcatttttca atttttgaaa ttacgttaat acgataatgt tgcggcgaaa acaaataacg       120
     ggcacactac aaagagcttc gctgaccaaa gtcggcgacg atcaaagacc gcgcgcgaca       180
     ctggttcgat gatcaatcgc atacgataat aacaacgcgg attggctgcc taaaatgcat       240
     catattccaa ttggttttcc tataacaaaa gattcttgta taaaaacagc taaagacgct       300
     tatttcaaac attatcgttc tgtattctgt ctcgagacgt tatagagccg agtctttaag       360
     caagtcagaa gtaaattgga tctttaccga tttaaggaat actgttataa tagtaaacta       420
     atccgcaaag agagctgtca aaaatgccac gcgcagcaaa atttccggtg gaagttattt       480
     tcgattcagt aaaagattta atgtttttca atgataccgg agaactaaaa ccgttatcac       540
     aaaacgtttg gaatgacgca atcgtaaaaa tgcgaaacga aatgtctgta aagcacatgt       600
     acttatacat ctctcggaat gaccacaaaa tccaggatat gctcagaaag tggcatggta       660
     ttgagcgaaa tactgaaata tcaatttcgg aaaaagattg cagtgcaaac tcaaactggt       720
     caatgaatac gtcccatgaa tcattaccac cacttagagt gacacttact atttcaggcg       780
     atgactggaa taatatcgtg gatgtatcgt acaaaagtag aaattacaaa gtattacgac       840
     agggttggac cgatgtactt caagagcaat tgtggcgaga atacaagttg ccgtgctgtt       900
     atgcctttaa aaatccaaaa gttaacgaga atcccgggga accttacttg tggattaaag       960
     gttcatgtac tgagtgtcgt gttggaatta atttgtacgc cttagataaa ccaactgaag      1020
     atggtcttac attgcagata tcaacaagtg acacaaagaa tattgagcac aaaaagaagc      1080
     gtcaactgcg gggtaaaaac aggaaacgaa tcgctaaaga aatcactgct cagtcgacgt      1140
     atgcttggcg tagacaaaaa gcttatgagc ttatggagtt cggtgacaaa attcccgcgc      1200
     atttgtacag cgaagatgtt ttacgcaagg caaaacaaac ggaaagcgat cgagagttag      1260
     ggctttgtaa aggcatcgac ctccaggaat cggtgcgtga attaaaatac cgccccgaat      1320
     ttgtagggac cattcgagag attgggaacg ataagttttt cacgatgtat tggagtccgg      1380
     aacaaatctt tctttacaag aaacattgca aagacacgtc gaaaactggt agcctaagta      1440
     tagatgcgac gggttcgatt gttcgaaaaa ttacgaaacc agatggatca agttcgatta      1500
     tatatcttta ccagggtgta attccgtttc atacgaaaat cttgccggtt gtccaaatgg      1560
     tttcggaaaa gcacgatgca aacatcttaa cttactggtt acgcgaatgg ttacgttctg      1620
     gtgtaccgtg tcctacggaa attgtcaccg attatgccct ggcgctttta aatgctgcta      1680
     gcttggcgtt tgaaacaatt gaccttaaca catatgtcaa tagatgtttt gcggttgccg      1740
     aaggaagtag ttccgttatg aaaccccgtt gccatataag aattgatatc gctcatctta      1800
     tcaagcttgt tacccgctgg aaatgctttc tcaatacgca tacacgggta aaagaatttt      1860
     ttcttcgatg cattggactt ctcgcaaaat gcacaacatt cgaacgattc gaaagtttat      1920
     tacgcgatat tttgatagta gctttttcgg agaccgagga tgtaagttca aataatggct      1980
     gcttcgctgc ccaaaaacga ctgatccaga atattaaatc agtgaacgag acagaattta      2040
     tagaagaaat tgatgctatt atagaaaaga aaataaattc tgaaaatgat tctaaagatg      2100
     attctgcagt gaatctagat ctcgaaactt tcgagttcga tgcaaccggg aaattaaata      2160
     cttttttaca aaaactcgaa aattgtaaat ggcaaacagc acaaacaaat taccaaccaa      2220
     atccatactg gtgtccgaat ttcgcgaata atcttctaag aataaccaag cactttacac      2280
     tctggacatg tatattggca ttaaatggga gcactgcaac ttcatcacga agcgaagaat      2340
     actttcgtga attaaaacac ctggttttaa gtggtgatcg gaatcttcgt gtcgacaaat      2400
     tcttgatcaa acacatacga tcaatttctg gcaccgagaa actcttaaac actgcttgcg      2460
     agtccattac tgataaatct gaagtgacca ttacagcgaa taaaaattca aaatttgata      2520
     tgtcaacgta tgaaaacttg aaatcgaatg caacatcaaa attctcgaaa accagcatga      2580
     aacttgattc tgtttcaaaa tcatatgaaa ttgagaaatt ggatgactcg acacttaatc      2640
     agacgattga ggaagctgac attacaaaaa gtttcgagga aacttactcg tttttacacg      2700
     aagaagaaaa ctggggcgga aaaaatttgc caaaaaaaag gaatgcagtt caaagtccaa      2760
     ctgataatgt ccttgatgag ttgaagcctg acactagtct cctaaaaaat acaataaaac      2820
     gtggaaaata tttaactccg tgtccggaca ttcaaagcat tctcgtgaaa ccaaacaaga      2880
     acgcaaattt accattgttg aaaaacggac aattgttggg gcgagtccgc atagcaaaaa      2940
     agaatgtaac tttttataac acgtgctcgt ttgattcaat tgcgcagtcc gtgttggcag      3000
     gttaccgaga ttgggctaat tatcataatt acattacagt atccaaaaat gagttttacg      3060
     attttgtaag aacattttca acttatggag caacgatcga aacatataaa aaacgatcaa      3120
     tgctactgag caatatgttt gccgtgcaaa ataatcaaat tgattgccat ttcaatttaa      3180
     gtaacttggt ttcccaaaaa ttattgaccg atgaaccatc atatcaaatt tcgcagcaat      3240
     gtcgtaattg taaccgtaat atcatcgata ttcgcccggt tattgatatc aatacgaagc      3300
     ctttttatga gaagagtatg caggctcttg aaagttatat taacgaaaaa ctatctgatg      3360
     tattttataa aaattgcatt cgatgtggat gtaataatat aatttcaaaa gtatctagcg      3420
     gaaatcatct cttcatcgat atcgaatgct tgcaatggtt aaagcttgcc gcaaatatgg      3480
     gttatgaaaa ctggtcaggg ttattcacca tttcgcaaat ctcctcaaga ctagtagttc      3540
     gtaaattaaa ctatacatta atttctgcta tagaatacat tggtactaca gatccaaaat      3600
     acataggaca ttatgtggcg tacatccgtc gaataactgg gcgatgggag gtccataatg      3660
     acttgtgtgc tgctaaaaaa ccaatcctaa tgacaacgag agcattgcta gaaaaaaaga      3720
     aattagcaat gttgatgtat gtaaaacaaa cgtaagtggt gagaaaacac aaggagaaca      3780
     taaaaaaaac atcccaagac atcaaaatat aaaagcaaag acgcttacac catatattat      3840
     aaaatattaa catatttacg cacacacaca cacacgcgcg cgcgcgcgcg cgcgcgcgcg      3900
     ctcattaata aaactattct tctaaatact gaaaataata tattgaaaaa agtgaatata      3960
     tcaaaaaaaa cttaaaaaac aaaaaaattt ttaaattaca agaaatttaa aaaaaacaaa      4020
     aaaaataaca aaaaaaattt aaaacaaaaa aaactttaaa aaaacaaacg gaactagaat      4080
     tctgccacgt cctcgtcgtt agttctggat tactctaagc gcaggaatac aacacaatgt      4140
     tcaataaact catattaata agacttcgaa gagtagcact actatgatga tataatgtta      4200
     taatgtagaa ataaaccgta aatacatata aatttcgata atgaaaagcg gtacaaacga      4260
     gtacaaacga ttttgaagca gcacccgttt gcagaattaa aatatttttg aaaatggcaa      4320
     agttaggtct tacccctatt ttgaaaattc ggtactttca cccccataag ggtacaaaca      4380
     aaataaaaag cggtacaaac gggtacaaac gattctgaag cagcacccgt ttgcagaatt      4440
     aaaatatctt tgaaaatggc aaagttaggt cttaccccta ttttgaaaat tcggtacttt      4500
     cacccccgta agggtacaaa cgaaataaaa agcggtacaa acgggtacaa acgattct        4558
//
ID   MuDR-1_LMi  repbase;    DNA;    INV; 5303 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   14-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5303
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3016-3016 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(626..1117,1021..1791,1795..1980,1989..2336,
FT                 2340..2984)
FT                 /product="MuDR-1_LMi_1p"
FT                 /translation="MNSVLCEQCGMNFTNHIALESHSKLIHKGKQQFICEV
FT                 CNKCFRDSFGLNRHNKSIHQSRDGKIPLVDVICPLCDYKGLRGTINKHFLE
FT                 NHSIKLEKCFLFTSENQFSEWKNNMERDTKSLYVKRRASKKNSDGELFLTY
FT                 IATVMDTLFRKVKTLGQSKYWVPIKWRTVSYLYCHRDGHFISKGENIRAIK
FT                 VLGSNKIGAHCPSFMKVTQGDNVSVEFIATHVGHSCDVGRLALSKDDKQKL
FT                 AAKIEMKVPMDEILGNIRVSVVGDNVSRLHLTNTKDLHNIIQQYNLNSDAV
FT                 FHNNDYVSVDVWAKKMQHTSNMIRLYKPQGLTIDEYPQLRAEDFCLVIAND
FT                 TQLQLLTRFGNDCLCSDGTHGLNGYNFELFTLLVLDDMRQGFPCAFMFCNR
FT                 SDTVVMELYYKTIISCLDSDLIQNVYVHGRVFLQCLEVCKTRQHYQATVLQ
FT                 WHVIHAWGHNLPKIKGKEKQDEIFNKMKIIMYEENFFIWQKLLDELYASKS
FT                 KFAKYFEKFVHDAPKWAYCYRMNAGINTNMALENLHKNLKHIYLKSRKVKR
FT                 LDKGIHALMKFLRDKLYDNLLFCIEEKLQRSCPHYDRDIIGPRTFQKNLSA
FT                 KRMVCGMSCQKNLLNSILFLCKKSQCDCSLRCVDCCACIHTFSCTCSDAAI
FT                 AWNMCKHIHLVCRLNQFGDITDTKNFAVNEKRHVESSQEERVILKDVSSST
FT                 SKDRADLEKEKLLAIEKFSRIVNSIETNEGLRALNKFISPLEFVVKNAEAK
FT                 NVAKYSSAPSTSREPANKKIEPQRRLFSTKQKHIRAKGRKRPSDTEMQKMA
FT                 LELFCQRRTPTL"
XX
SQ   Sequence 5303 BP; 1780 A; 988 C; 1000 G; 1533 T; 2 other;
     ctagcgtctg gcgacagctc tacgtgtcaa agaacttaag gcgaaaatgc aatatctggc        60
     aatacttcgt agcacccaac tgctttggcg ggagttaaca aacgatcttc caggagttct       120
     tataatccaa gcaaaaattt ctttcccaat gaatcactaa atcatcttta tttgaatttc       180
     ttacaactaa atataaataa atacgcaaga acaataaaga aaaaccctgt gcatagatta       240
     staaacacta acgaagaact aaattgtaga aatkccttgt ggtataggtg ttagagtgtt       300
     ggactcccat tcctgaggtc taacgtaatg ctgcagtcgt tccacttgtt gtttttactt       360
     cattctttta tctcatcgtt cgtaacacac tgtatgaatt aattacttat ccataacaca       420
     ttgcgagatt ttttttaatt catgtaactg tagaatgtta tccagtactt gatgttacta       480
     acgtaaatga gcactctaag aatcagtagc atcattttgg tgatttctgt atgagtgaaa       540
     gagagagaac gacgctaaaa gtgacgtcac tttgaagttt gtttactttt gtatcggcag       600
     tgaatttgag atccgcgaaa cgaagatgaa ttctgtgctg tgtgaacagt gtggaatgaa       660
     tttcaccaat cacattgcat tggagtccca ttcaaaactt atacacaaag ggaaacaaca       720
     gtttatttgt gaagtgtgca acaagtgctt tagggattcg tttggcctga atagacacaa       780
     caagagtata catcaaagca gagatggaaa gattccatta gtggatgtaa tttgcccatt       840
     gtgtgattac aaaggactgc ggggaacaat aaacaaacat tttcttgaaa atcacagtat       900
     aaaactggag aagtgtttcc tctttactag tgaaaatcaa ttcagtgagt ggaagaacaa       960
     catggaacgt gataccaaat cactgtatgt taaacgtcga gcatcgaaga agaatagtga      1020
     tggagaactg tttcttacct atattgccac cgtgatggac actttatttc gaaaggtgaa      1080
     aacattaggg caatcaaagt attgggttcc aataaaatag gtgcccactg cccctccttc      1140
     atgaaggtga cacagggtga caatgtatca gttgaattta tagccaccca tgtcggccac      1200
     agctgtgatg ttggaagact ggcactttct aaggacgaca aacaaaaact tgcggcaaaa      1260
     attgaaatga aggtaccaat ggatgagatt ttgggcaata ttagagtgtc tgtggttggt      1320
     gacaatgtaa gtcgtttgca tctgacaaac acaaaggatc tgcataacat catccaacag      1380
     tacaatttaa atagtgatgc tgtgtttcat aataatgatt atgtcagtgt ggatgtgtgg      1440
     gcaaagaaaa tgcaacatac ttcgaacatg attcgtctat acaaacctca aggcctaact      1500
     atagatgagt acccacaact gagagcagaa gacttttgcc ttgtgattgc aaatgacacc      1560
     cagcttcagc ttctgacaag atttggaaat gactgtcttt gttctgatgg cacccatgga      1620
     ttgaatggct acaacttcga gctattcacc ttattagttc tggacgacat gcgtcaggga      1680
     tttccctgtg cctttatgtt ctgcaataga agtgatacgg tagtaatgga actgtattac      1740
     aagaccatca tttcctgctt ggactctgat ttaatccaaa atgtttatgt ctgacatggc      1800
     agagtgtttc ttcaatgctt ggaagtctgt aaaaccagac agcactacca agcaactgta      1860
     ctgcagtggc atgtaattca tgcttggggg cataatttac ctaaaataaa aggaaaagag      1920
     aagcaggatg agattttcaa taagatgaaa attatcatgt atgaggagaa ctttttcatt      1980
     taaagtgatg gcaaaaattg ctagatgaac tgtatgctag taaatcaaaa tttgctaaat      2040
     attttgaaaa gttcgtacat gatgctccaa aatgggctta ttgctataga atgaatgcag      2100
     gcataaacac aaatatggcc ctggaaaact tgcataaaaa cttgaaacat atctacctca      2160
     aatcaagaaa ggttaaaaga ctggataagg gaattcatgc cctgatgaag tttttgaggg      2220
     acaaattata tgacaactta ttattctgca tagaggaaaa gttacaaaga agttgtcctc      2280
     attacgacag agacataatt ggtccaagga cctttcagaa aaatctgtct gcaaagtaga      2340
     gaatggtgtg tggaatgtca tgtcagaaaa atctgctgaa ctctatattg tttctgtgca      2400
     aaaaaagtca gtgtgactgt agcctacgat gtgttgactg ttgtgcatgc atacacactt      2460
     tcagctgcac ttgtagtgat gcagctattg cgtggaatat gtgtaaacat atccatcttg      2520
     tgtgtaggtt gaatcaattc ggtgatataa ctgacacaaa aaacttcgca gtcaacgaaa      2580
     aaagacatgt ggaaagctct caagaagaga gagtaatcct gaaagatgta tccagtagta      2640
     catcaaaaga cagggctgat ttggagaaag aaaaattact tgccatcgag aaattttcaa      2700
     gaattgtaaa ttctattgag acaaatgagg gactacgagc attaaataaa tttatttctc      2760
     ccctggagtt tgtggtgaaa aacgcagaag ccaagaatgt ggcaaagtat tcctctgctc      2820
     cctccacttc cagggaacca gccaataaaa aaattgaacc ccaaagacgt cttttttcaa      2880
     ccaaacagaa gcacattcgg gcaaagggca gaaagagacc atcagacacc gagatgcaga      2940
     agatggcatt ggagctgttt tgccaaagaa gaaccccgac tctctgaaaa agtaataggt      3000
     acaatgtaaa gaaaatagtg tgcaactgac tacaaatatg aacatgagtg acaacagcta      3060
     cttaagaaag acactagcac acaaacctag cttttactag gactcttagg ttatgctttg      3120
     acttcttcag ctgctttgcc taatgattgt ggtcatgagt aagctttgtt atcattgatt      3180
     taatatgata ttgtttcttt cttttctgat atgtacgttt acttttcctt tcatttaatt      3240
     ttaatttttc tttgcatttt tgatttctca agcattttca agcacacaaa ctaacatgtt      3300
     tttttagtaa taataaaaaa tttatttgat gttgataact tttacagtcc atggagtacg      3360
     aaattgtttc ggacaaggtc tagtgtccga tgccacctgt cggcttcgaa caatgacatc      3420
     atatgttatg cagacacttt acgttcatga tacttttgat acaaggaaca cattgcaata      3480
     aacattgaat gtattaataa gctgtttttt cgtcgaagct gacagacggt accatacact      3540
     agatttgatc cccataagaa aaatttatgc tcaaataacc aaaaatagtg tatttcatag      3600
     ttcttcgctt actaataaca gtcatatttc acatttacat ctgtaagaaa tcctatactt      3660
     ccaaatcaag ttttggtata actgtagact gggataccac ccgtctgctt tgacccatga      3720
     catcaagatg taggaaaacc agtatatggg atatcttaat acttctgtat tgtagataca      3780
     aataatctgt agttattata gataacagaa tgtaccatca caagtcttag cccaaaaatt      3840
     cgcaccttcg gcgctgacat acgaagaaag aactctcggt taacctacac ctaaccatca      3900
     gagagaagct acagatcact ttttaaacac aaaatattaa tctgttttgt ttgtaaacaa      3960
     actatcgtct ttatctcggc caccacataa tcactcacgc cttctacaaa cacgcacgca      4020
     cctcaaaact acagcgctgc gatgacgtca cgggtaaaag ctgacgggcg gtatccccgt      4080
     ctacaggtga gcccagttat agtatttcgg ggacatgtaa taaggtttaa tataaacgtt      4140
     gatggataga atgacgtaat atatgacgtc cttggtcaaa ggtgacgggt ggtatcgtac      4200
     actagacttg accccaagcg cacaaactaa catgttttct agtaataata aacaatttga      4260
     tgaggataac ttttagcggc cattggaaac gaaattgttt caggcctttg aatgatcaaa      4320
     acaaactgta aaacttcgca ataacatatc aacaaatgaa taaacgatat aatactgttg      4380
     ccaccgaaac gtaaaataac gtgtccacgt acagttaaaa aatgcataca tgatacagta      4440
     ttggcacaca cacacacaca cacacacaca cacacacaca cagtatataa aacagcttga      4500
     attctgtgtt cacaacgaag ctgcaatatt tgtgtcggca gtattcgtaa acaaaacatt      4560
     caagtccctc tacttatttt gattttatcc attaggaaat ggtttttctg aaagcccgcg      4620
     actgtgagat aaacggattt gtttataaat aacagtcctg ctacaatcac gattttttat      4680
     ttagcacgac gcgtttcgga aaatcattgc tatcttcaag tgcgtttctc tgtgctattt      4740
     catattattg agtgtgtgag ttactgcttc attctgctgt cattactgta aatatatttg      4800
     tgataactgt atcctactca tgtgcaacaa tattataagt gatgtttgat atgtgtgaga      4860
     gctgtcatag atgcaccaga cgaaaactat aagtatagct tatcgaaaat ttcgccacta      4920
     actccatata aagataacca taaactacaa tcgcacgtat ttatatatca cagtaatgac      4980
     agtagaatga agcagcaact cacacattca aaacatcata aataatatga aatagcacag      5040
     aaaaacgcac ttgaagataa taatataaag tcgtgctaaa taaataaaaa atcatgactg      5100
     gtaattacca gtatcgttat ttacaaccac atcctactca gtactcacta ccactacagc      5160
     ggcacagtct aatcatctaa tgttagactc tgacgccggc agcgaacaca gtgacgtcac      5220
     gccaaagagt gctacgaagt attgccagat actgcatctt cgccttaagc tctgacacgt      5280
     agcgctgtcg ccagacgctt gtg                                              5303
//
ID   MuDR-1_MyPe repbase;    DNA;    INV; 3423 BP.
XX
AC   .
XX
DT   30-AUG-2019 (Rel. 24.09, Created)
DT   10-SEP-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon, a complete sample sequence.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-3423
RA   Bao W.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Direct Submission to Repbase Update (10-SEP-2019).
XX
DR   [1] (Consensus)
XX
CC   Extracted from a single locus. TSDs are 8-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(322..420,553..784,868..1007,1092..1269,
FT                 1432..3173)
FT                 /product="MuDR-1_MyPe_1p"
FT                 /translation="MSSRDCVLCNTTFSTVSNLNKHLKRKHTELLPQVNRI
FT                 QKNGYTCDNCNQKFNSKKSITKHLKQEHSELKIKCSVENCNRSYKTLKCFS
FT                 KHLKNDHNIDINIESLSFNTIEEFKKWKTNIEDTKICQYVQRTSTKTHHNV
FT                 EYSYYICHRSYHPRLASKGQRNPKSSGSVKIGKVCPSYIRVHKNGAQFQIE
FT                 FCSTHLFHDNEIGKQRLHTEVRCQLAGKLGMGVTVQRVLNDVRNSATITDF
FT                 KRIHLLEKRDIHNIRRDFKIDNYSTKMHENDFVSVYLWVEQIKEKSETNPV
FT                 LYFKHQGEDSTTHLTRDDFCLILMTEYQAEMLKKFGCDKICVDGTHGLNSY
FT                 NFQLYTLLVVDNYGNGFPVAFCFTNKSDTSTYKLFFECIQRAVGLIKANVF
FT                 MSDDEPAFYNAWQSIMGPVSKQLLCTWHVLRNWSKNLSKIHSQEKKSMVYK
FT                 TLKSLMHETDKNKFYIEITKVIEDLKNDTDTADFGQYFASNYSSRVEKWAF
FT                 FNRRHVGINTNMYLEALHKNIKYCYLEGKQCRRLDLAINAVMLLVRDKCFE
FT                 RIIKISKQKRSSKILQIITSHNKSAYIKSDMILKVNSCTWMVNSQTDPKTK
FT                 YIIEKINLPCNGCVLCCEYCKICVHIFKCSCMDNIIYLNICKHIHAIAKVD
FT                 VIVVQPSSNVNTYNTDENGKLKREISNNTETNITDLYKEINKKMEAMLGMH
FT                 SRATLSIESQQNILKHCDKILTIISKETNKSSDNVPTKTTNIKHIEKQTRF
FT                 YSNNRKKPNINLPLSSLESNLIRDSLNNSNGEVLNVHSSNDHSYF*"
XX
SQ   Sequence 3423 BP; 1353 A; 438 C; 485 G; 1147 T; 0 other;
     acgaatggat cttcgcagga aaaatcccaa aagaatccaa catggcgtca aatcgcttat        60
     cacatttatc actacatatt tatcacacgg ttatcagttt atcactgatt acgaagtata       120
     ccgccttttt ccatttcgtg atttatttaa atttatttaa gcgttcaaaa aaaaagttta       180
     aaaatgtaat acaaactaac cagttattta gagattattt cacagactag tttttcaata       240
     ccagtgttat aataatacaa ctaagttccc agttataatt attattattt atgattaata       300
     ttacaataca atattagaga aatgagttcc agagattgtg ttctatgtaa tactacattt       360
     tcaactgtat ctaatttgaa taaacattta aaaagaaaac atacagagct tttaccacag       420
     gtacatatta taatatcaag ttttataaat gttaggccat aattaaacac aaaattttta       480
     ttttaaaaat tcttattttg atttatttta taaataatat gtctgaatgt atcatcttgt       540
     attttgtgga aggttaatcg catacagaaa aatggttata cttgcgacaa ctgcaatcaa       600
     aaatttaatt caaaaaaaag tattactaaa catcttaaac aggaacatag tgaactaaaa       660
     attaaatgct cagttgagaa ttgtaacaga tcttataaaa cattaaaatg tttttccaag       720
     catttaaaaa atgatcacaa cattgatatc aatatagaat cactaagttt caatactata       780
     gaaggtatct tgatttatta aaaattttac aaatagataa taaccaataa ttaaaattaa       840
     aattgtcaaa acaattattt ggtttagaat ttaagaaatg gaaaaccaat attgaagaca       900
     ctaaaatctg tcaatatgtt caaagaacat ctactaaaac tcaccataat gtggaatact       960
     cgtattatat ttgtcatcgg tcataccatc caagattagc tagcaaggta ataacacttt      1020
     atctatttga aataaatgac ctataaagta aaattatatt attaaaatat gagatacgtt      1080
     ttatacttaa gggtcaaagg aatcctaaaa gtagtggttc ggttaaaatt ggaaaggttt      1140
     gtccatcata tattagagta cacaaaaatg gagcccaatt tcagatagaa ttttgtagta      1200
     ctcatttatt tcatgataat gaaataggga aacaaagatt acatactgaa gtcagatgcc      1260
     aattagcagg tactcatata ataaaatgca aaaaatatgc ttaatttact tttgtagtca      1320
     cattaaaaat taaaaattaa aaagtaatag gataaatacc tttttattta aagcttatcc      1380
     taaaagtaaa taatcatagt ttaaaaatat ttatgtttac atttttttta ggcaaactag      1440
     gtatgggtgt aacagtacaa cgagtcttaa atgacgttcg aaattctgct actataactg      1500
     attttaaaag aatccattta ttagaaaaac gagatataca taatattaga cgtgatttta      1560
     aaattgataa ttattctaca aagatgcatg aaaatgattt tgttagtgtt tacctgtggg      1620
     tagagcaaat caaagaaaaa agtgagacaa atccagtgtt atattttaag catcaaggag      1680
     aagattccac aacacatttg actcgggatg atttttgttt aattttaatg actgaatacc      1740
     aagctgaaat gttaaaaaaa tttggatgtg ataaaatatg tgtagatgga acacacggtt      1800
     taaatagtta taactttcag ttgtatactt tacttgtagt agacaattat ggaaatggct      1860
     tccctgttgc attctgtttt acaaataaat cagatacatc tacatataaa ttattttttg      1920
     aatgtatcca gcgtgcagta ggacttatca aagccaatgt atttatgtcc gacgatgaac      1980
     ctgcatttta taatgcatgg caatctatta tgggtccggt ttctaagcaa ctattatgta      2040
     cttggcacgt attaagaaat tggagtaaaa acctttccaa aattcactca caagaaaaga      2100
     aatctatggt ttataaaaca ttaaaatctt taatgcatga aactgataaa aacaaatttt      2160
     atatagaaat aacaaaggtc attgaagatt taaaaaatga tacagatact gcagattttg      2220
     gtcaatattt tgcgagcaat tattcttcaa gagttgaaaa atgggcattt ttcaatcgca      2280
     gacatgttgg tatcaacacg aatatgtatt tggaagctct tcataaaaat attaaatatt      2340
     gctatctaga aggaaagcaa tgcagaagac tcgatttagc cattaatgca gtaatgttgt      2400
     tagtgcgaga taaatgtttt gaaaggatca ttaagatttc aaaacaaaaa aggtcatcca      2460
     agatattaca aattatcacc agtcataata aaagtgctta tattaagtcg gatatgattt      2520
     taaaagttaa tagctgcaca tggatggtta attcacaaac tgatcctaaa acaaaatata      2580
     ttattgaaaa aattaattta ccttgcaatg gctgtgtttt atgttgtgaa tattgtaaaa      2640
     tttgtgttca catatttaaa tgttcgtgta tggacaatat tatatacttg aatatctgta      2700
     agcatatcca tgcgatcgcc aaagtagatg ttatagtagt tcaaccatca tctaatgtaa      2760
     atacatataa tacagatgaa aatggtaaac tgaaaagaga aatttcaaat aatacagaga      2820
     caaatattac agatttatac aaggaaataa ataaaaaaat ggaagcaatg ttaggcatgc      2880
     acagcagagc aacattaagt attgaaagcc aacaaaacat tttaaagcat tgtgataaaa      2940
     tacttactat aatttcaaaa gaaacgaaca aatcaagtga taatgtacct actaaaacta      3000
     caaatataaa acacatagaa aagcaaacca gattttattc aaataataga aaaaaaccaa      3060
     acattaatct acctctttct tcacttgaaa gcaatttaat tagggattca ttgaataatt      3120
     caaatggtga agtattaaat gttcattcat ctaatgatca ttcgtatttt taaggtgaat      3180
     tttttgacat ggacaaagag tctgaaaaac gtgtattttg tattataaat tattattgaa      3240
     ttattgtgta atttttattt gtaattaacc taagatttat tttattattt taattatttt      3300
     atgataacct tagtttgtga tgacacagtg atgataacca ataaattatc tattaccata      3360
     gtgataagag taacgtcgcc atgttggatt cttttggaat ttttcctgcg atgatccatt      3420
     cgt                                                                    3423
//
ID   MuDR-1_RPr  repbase;    DNA;    INV; 3608 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   MuDr-type DNA transposon: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3608
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3326-3326 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to the consensus. Both termini are not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(541..987,1007..1624,1609..2064,2204..3130,
FT                 3073..3369)
FT                 /product="MuDR-1_RPr_1p"
FT                 /translation="MPKXPNVSSEVLRSAIAKHVAGILHCGRIPVPTNTIY
FT                 KEIVKDLDYKVSAKAVXNFLRRNAIEIIPQLLNKIEEKQGNISQEGISSEE
FT                 EEADKSDSSTSVSCQFDLHINAEQWQLIRPHSIFTARNETCRPNIKFRRRT
FT                 VLPKGSWTIHNKKVSLTWIFRPGTGNNFVESKCKQCGATLTIAKVLDEEQS
FT                 NIKLHCSVYDCDPEMKHDSAVKRKLSGIRRLQVVDSLSKMTASSYRREVAN
FT                 ELMTFGDKEPLCPFRQVYRQAKYECNLEKRLHRNPVLAIWSMKCTLPYIGS
FT                 VHSCGLDPFFVHYWTSSQVELYKKYSSENYTVLSVDATGSLINRLVPHPKP
FT                 EGFHKSKHCFXTALFLXVGVLXKTYGPAVPDLQMLSQAHDTLSLTYWLQKW
FT                 LTHIYKKPNEVRTDDXAALIKXVTTAFTKHYSVNAYVESCYASLSDRELTP
FT                 SCFIRLDRNHLIKAVTRWKCFANKDFRIXKLYCHCIGLLTDLTVFSDIKQK
FT                 IQIAFCCFISLELSESENDWFSQIYRTVKTELQILKENEDEDNLFSLPAIV
FT                 TPLQRLCHKLPLWSAVMVPNFFGPEIKSTTSYIESYFKDLKSSTFQQSKLV
FT                 SADMFLMKHINSLEGQMKLSFSKLLEVPCSAPVPITTGESDVSHLEGSTEK
FT                 TSFSEESVFQKRPREEENWMGKNKPSKLRKVSSTYFSLQEEWNFAEPVPKN
FT                 MGMPGILKNGSVLSSLSINNEKYLLKNTCPFDSVIQGLASLCNYSSNFNAV
FT                 IXEGKDSNSLFDLIYKVSKNCMVESYKLRLQLLTSLFKQVRNITIKTKSVI
FT                 FVKQQTLGLVLLSLNKECNFCKTTDTWTRPFVPLNYEILTFFGLDSLDESV
FT                 DLSYFTKQTKCHNSDCCGSINKTVVIGNLIFIEPYSLKSNEEFLTEIRSIP
FT                 QTLTIQARNII"
XX
SQ   Sequence 3608 BP; 1214 A; 605 C; 644 G; 1131 T; 14 other;
     ataaatttct taatgttact tcacttcact tctctggttg agatcctcta ctttgccgac        60
     tccaaaacaa tagtacatct ctagaagtga gttacaacac gtttttacgc agtaagttac       120
     accacttttt aatatttcca taaaatttgt aactgtagta tttagtgctg tttctctgta       180
     agtttctgat ttctatatcg cacactgttc cagtaactgt aatacacttt tatatttaat       240
     ctagcacctt actttactaa tcctcactgc accaggtcct tgcttctaat atttctcttt       300
     tactcattac awtttttatt tcattattaa attagtttca ttttactatt gtaattgtta       360
     ttgtatttta attcattgat taaatttagt tcttccacaa atttatctat aattgtgtta       420
     tacatatatt tgttattaac tatgactttt ttttattcat tctagaataa gtgkatttgt       480
     tgttgtaatg tagtagactt ttatttacat gtttcatttc ttaactttct twcattagaa       540
     atgcctaaaa awccaaatgt ttcttctgaa gttttacgca gtgctatagc gaaacatgta       600
     gctgggatat tgcattgtgg tagaatccct gtgccaacta ataccatcta taaggaaatt       660
     gtcaaagact tagattataa agtcagcgca aaagctgtgt amaatttctt aagaagaaac       720
     gccattgaaa taattccaca gcttttgaat aaaatagaag aaaagcaggg aaatatttca       780
     caagaaggca tttctagtga agaggaggaa gctgataaaa gcgattcaag tactagcgtt       840
     tcttgtcagt ttgatttaca cataaatgca gagcagtggc agttgataag accacactct       900
     atttttactg cgagaaatga aacatgtagg ccaaacatta agttcagaag gaggactgtt       960
     cttccaaagg gcagttggac catacactga atgacttaat atatgaaaca agaaagtttc      1020
     cttgacttgg atatttcgtc caggcacagg aaacaatttt gttgagtcca aatgcaaaca      1080
     gtgtggagcc actttaacaa tagctaaggt acttgatgaa gaacagagta acattaagtt      1140
     gcactgttca gtttatgatt gcgatccaga aatgaaacac gatagtgcag taaagagaaa      1200
     attatcggga ataaggaggt tgcaggttgt tgatagttta agtaaaatga ctgcttcctc      1260
     atatcgtaga gaagtggcta atgagctgat gacttttgga gataaagaac ctctatgtcc      1320
     attcagacag gtatatcgtc aagccaagta tgagtgtaat ttagagaaac gattgcatag      1380
     aaaccctgta cttgcaatct ggtccatgaa gtgtaccctc ccatatattg gcagtgtcca      1440
     cagctgtggt ttagatcctt tctttgttca ctattggaca tcctctcaag ttgagttata      1500
     taagaagtat agctctgaaa attacactgt attgtcagta gatgctacgg gtagtcttat      1560
     aaatcggtta gtaccacatc cgaaacctga gggatttcat aaaagtaagc attgttttta      1620
     kacgtaggag tattawgtaa aacatacggg ccagcagtcc ccgacctcca aatgttgtct      1680
     caagcacacg ataccctttc tctcacttat tggttgcaga aatggctaac tcatatctat      1740
     aaaaaaccca acgaagttcg tactgatgac wcggcggcat taatmaaggm agttacaaca      1800
     gcatttacta agcattacag cgtaaatgca tatgttgaat cttgctacgc cagtctatca      1860
     gatagagagt taacaccatc ttgtttcatt agactggatc gtaatcatct cataaaagca      1920
     gtaactcgat ggaaatgttt tgcaaataaa gattttcgaa tawagaaatt gtactgtcac      1980
     tgtataggtc tgttgacaga tcttacagta ttctcagaca tcaagcaaaa aattcagatt      2040
     gctttttgtt gctttatctc cttatgaaaa ttgtgaatca aagaatgcta aaaaatcaat      2100
     aattaacttt atttctaaag ggctagtaaa gaatttagaa acagaaaaac tagagcctga      2160
     agaatgtgaa ataggaaggg aaaatgaaag tgtgttagag taggaactgt ctgaaagtga      2220
     gaacgattgg ttctctcaga tatatcgtac tgtgaagaca gaactacaga tacttaaaga      2280
     gaatgaggat gaagacaatt tgttctcatt gcctgccatc gtgacgccac tgcaacgttt      2340
     atgtcacaaa ctgcctcttt ggtcggcagt aatggtgcca aatttttttg gtcctgagat      2400
     aaagtcaact acttcataca tagaaagcta cttcaaagac cttaagtcat caacgttcca      2460
     acaaagtaaa cttgtatctg ctgatatgtt tttaatgaag catatcaatt ccctggaagg      2520
     gcagatgaaa ttaagtttca gtaagctgtt agaagtcccc tgtagtgcac ctgttccaat      2580
     cactacagga gaaagtgatg tgtcccacct tgaaggttct acagagaaaa cttcattctc      2640
     tgaagaatca gttttccaaa aaaggcctag ggaagaagaa aattggatgg gaaagaataa      2700
     accatccaag ttaagaaaag tgagttctac atacttctct ttgcaagagg aatggaactt      2760
     tgcagaacca gtccctaaaa atatgggaat gccaggtatt ttaaagaatg gcagtgtatt      2820
     gtcaagttta agtattaata atgaaaagta ccttttaaaa aatacatgtc cctttgattc      2880
     agtcattcag gggttagctt ccctttgcaa ttattcatca aactttaatg ctgtcattaw      2940
     cgaaggcaag gattcaaata gtttatttga tttaatttat aaagttagta aaaactgtat      3000
     ggtagaaagc tataagctta gactgcagtt actgacttca cttttcaaac aggtaagaaa      3060
     tataactatt aaaacaaaga gtgtaatttt tgtaaaacaa cagacacttg gactcgtcct      3120
     tttgtccctt taaattatga aattctaaca ttttttggtc tagatagctt agatgaaagt      3180
     gttgatctta gctatttcac caaacaaacc aaatgccaca attccgattg ttgcggcagt      3240
     ataaataaaa ctgtagtaat aggaaactta atattcatcg aaccatattc tttgaaaagt      3300
     aatgaggaat tccttactga gatacgaagt atacctcaga ccctgacaat ccaagcaaga      3360
     aatataattt aagaatagta attgaattta agccaccatc atattgccct tttggaaata      3420
     ttaattttgt cgaggataag ttaccgaatg agactgatta ccaggaatta acctctastg      3480
     cggcgaataa tcagcaaatt gctgcagaaa atatttctta cagaaatgct gaatccaawg      3540
     caaaatccac aacagaatga acagaacaat gaaaagaagt cacgttcttc atttgtttgg      3600
     aagaagaa                                                               3608
//
ID   MuDR-1_SIn  repbase;    DNA;    INV; 5633 BP.
XX
AC   .
XX
DT   20-DEC-2011 (Rel. 19.02, Created)
DT   20-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   MuDR-type transposon sequence - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5633
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 345-345 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. 3' terminus is uncertain. It encodes
CC   a Rehavkus-type transposase and a Ulp1 protease. The region
CC   34-979 is an insertion similar to DNA9-1_SIn, and thus masked by
CC   x (TSDs are GGATTCCCC and GGTTTCCCT). The sequence 34-979:
CC   GTGTGTGTGAAGTTGGTGTATCATTTTAAGGAAATTCACGACAAATTGAGAGTTCTGGCTTTATTTATATTAGTTCTTTATTT
CC   ATATTAGTTTCTGATAGATAAAACAAATAGTTCTGGCCTTTAAAGTAAAAAAACGCATAGGATAAAGTGAGACGTCAGGTTC
CC   AAGCAGTGTTTCAGTTTGTCCTGCGTTATTTTCCGACACAGTTCTTGTAGAATTTTAAAAGATCAATAGTTTTAGAAAAGTT
CC   CTAGAAAAAGTTCTGACGTTTAATATAGTTTATTTTATTTTTATTTAAAATTCTTGTAAAATAATTACATTATAATGTTATGT
CC   AATAGAGTTCCGTGTACAAAAGGATATGTTTCCTCTAGTTTTGAACGTATCTAAGCGCCTTCCAAAGAGTTCTGGTCGAAT
CC   CCGTTATTAATTAGTTAATAAAAAATTAATACCTTCCACGAAAAATATATATTTGTGTATATGGGTGAGACATTGGTCTATT
CC   TTCAAGAGTTTCGTGTACAAAAAAATATTTTTCCTCCAGTTCTGAATATATTTAAGCGCTTTTCGGGAGGCGTTTACATGTT
CC   CAAAACTGGAGGAAACATATATTTTTTGTACACGGAACTATATTATATAATATTATAAAATAATTATTTTACAATAATTTTA
CC   AATAAAAATTAAATAAACTATGTCAAACGCCAGAAATCTTTCTAAAACTCATGTAGAACTATAAATATTTTAAAATCTACA
CC   AGAATGGTGTCCGATAATGACACAGGACAAACTGAGACACTTCGTGAACCTAGCGTCTCACTTTGTCTTATGCGTTTTTTT
CC   TTTCGCTTTAAAGACCAGAACTATTTGTATTATCTATCAGGAACTATATAACTATTGTAAATGAAGCCAGAACTCTCTTTA
CC   ATTTTTTGTGAGCTTCCACGAAATAATACGCCAAATTAACAGACAC.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1288..1764,1752..2564,2474..3022,2959..3489,
FT                 3420..4511,4515..4781)
FT                 /product="MuDR-1_SIn_1p"
FT                 /note="transposase and Ulp1 protenase."
FT                 /translation="MKTYAKLITIDAICDAIIQIYNKYDNNVYDFVSRLHH
FT                 PSNVWLDICSNIIGNGDQRTVEKHHRKCKDIFRNYTNSIISVIGTKTHNVM
FT                 TPVQYVKQTESVKKVTSSNVSKNDNDADFLHNDVNTEETPMEMFSQSLIID
FT                 EHTSLTVTDDQSLRSDVRMIRTNDMIEDDHDSSLSQFSLRIKDIAINESSL
FT                 SNVSAEYSDLSPNLSELSPNNFPGKKIIGREKKVSIRGSSFVLPKHFWEEF
FT                 WVGNGEPLRKGWVDAFNIEFEKKYPLCVLAISWHKCKNKLNRSNFFFQAAG
FT                 QCKHSTCIKFKFFVKEKIDVPYTDTIVHVDVSGHVSHRKERHRRNICGKTR
FT                 AALADELEKRSAIVVKLKMLAKADKEILQAGNLNNTPSLDILQKISSENRA
FT                 KHDLDKDLVTFMVNYMINSKNRSEVKYYTVTYKNFLRFGYIYGKLYDQQQE
FT                 QIRGEILHGYVQEFSLIPLSVILFSEKQIKYLAANKLRHLHLDATGSIIAQ
FT                 PKLLHTATTIYYYVLLLPGNIDVGPLPIAEFISSKHDITAIKHFLDVFNDN
FT                 LKKITTKKIKKIETDFSLALIQSACRTFNGINLQSYIQRMYEEYEKNIXMK
FT                 ENVTIILYIYVFPTLKKYIXERKCDNYIIHICFSYFIKTPIQKIKKCYPDR
FT                 KTQKQMRSIAASLLANTLHCNCVSATAEVYSVFVKLFGNDHEINDFDHVIQ
FT                 YVKIITEDVNNISDDRYSPPEEQAXMFSFDRKSSLYYQAFKKIEESAQENN
FT                 KINSKLNPFFSKEFFDYVTDFLMPYFPLWSATGIAQFHSLRHGFSNAIFPX
FT                 VVCYGHCTIPLLSRDSNAPVENYFKILKHQILDEETRIPAPRFIQANFKII
FT                 EARLQERQFSLKTTRCKEKKKISDDENDPVETWKKSKPNKFLIYSKFLKDS
FT                 KTIQQNQETTNQEITISRKDNDFPEKCKSGYHETAADKLLFHTNIRYPDGF
FT                 PDLRKDINGYIIESKNFRTLLPDQYLDDTIINAFFSLLPRTAKXKNIPLLC
FT                 FDTHFCQNILTRGFVSVGYNKWATQNTVWDYPMWFIPIHFAAHWTLLVIVH
FT                 SQQTIVYLDSLHGSPEERILNGICNFIQEHVGITSWNEWTLHTPRDVPSQI
FT                 KNNNVGGNCGVHVCTWAYIIASGSFTQFTEDDMSVARKGIASYLANVSDKR
FT                 TENKATKFRHLILSNNEQHLTTENSVLKYLKKSESAPFHFISIFEFXASLH
FT                 LIIQSDKPQPQTRQQKRETSYSSKGVCNKKLCL"
XX
SQ   Sequence 5633 BP; 1652 A; 834 C; 806 G; 1384 T; 957 other;
     ctgtagctaa ttttattatg actcggattc cccxxxxxxx xxxxxxxxxx xxxxxxxxxx        60
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       120
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       180
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       240
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       300
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       360
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       420
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       480
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       540
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       600
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       660
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       720
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       780
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       840
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       900
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx       960
     xxxxxxxxxx xxxxxxxxxa ggtttcccta cgtgtcaaaa acttatcagt atttttctca      1020
     gaagatagtc gcgactgtct tctgtctttt gagcactact tctcagcgtt tccaccttcg      1080
     ctgatcatcg aagcacgcat ctccgcgatc tccgtggcac acactggaag cgggacttgc      1140
     gatatctcct tttcactttg gtctgaacca ggcttttctg caaacgctgt agtaggtgtc      1200
     aaggtaggcg caagcttaac gataaaaaaa aatcagtttt attcaatcgt tttctttatt      1260
     gtcaatattt tttaaaattt gagcagcatg aaaacatacg caaaattaat tacgattgat      1320
     gctatttgtg acgctattat acagatatat aataaatatg ataataacgt ttacgatttc      1380
     gtttcgcgtt tacatcatcc ctctaatgta tggttagaca tatgcagtaa tatcataggt      1440
     aatggggacc agcgtacagt tgaaaaacat catagaaaat gtaaagacat ctttaggaac      1500
     tatacaaata gcattataag cgtcattggt accaaaactc ataatgtaat gacacctgta      1560
     caatacgtaa agcaaactga aagtgtgaaa aaagtaacat cctcaaatgt gtctaaaaat      1620
     gataacgatg ctgattttct gcacaatgat gtgaatacag aagaaacacc aatggaaatg      1680
     ttttcacaaa gtctgatcat cgacgaacat acatcattaa ctgttacaga cgatcaatct      1740
     cttcgttctg acgtacgaat gatatgattg aagatgacca tgattcatca ttaagtcaat      1800
     tctctttgcg tataaaagat attgcgatta atgaaagttc attatcaaac gtatccgcgg      1860
     aatattctga tttatctccg aatttatctg agttatctcc gaataacttt cctgggaaaa      1920
     aaattattgg tagagagaag aaagtttcaa tacgcggaag ctctttcgtt ctccctaaac      1980
     acttttggga agaattctgg gttggcaacg gtgaaccttt acgaaagggt tgggtagacg      2040
     ctttcaatat tgaatttgaa aaaaaatatc ctctgtgcgt tttagccatc tcatggcata      2100
     aatgtaagaa taagttaaac agaagtaatt ttttctttca agctgcaggg caatgcaaac      2160
     actcaacatg tataaaattt aaattttttg tcaaagaaaa aattgacgtg ccctatactg      2220
     acacaattgt gcatgttgat gtcagtggac atgtttccca tagaaaagaa cgacatcgtc      2280
     gaaacatttg tggcaaaacc agggcagcgt tagccgatga attagaaaaa cggtcggcaa      2340
     tagtggttaa attaaaaatg cttgctaagg ccgataaaga aatattacaa gcaggaaatt      2400
     tgaacaatac tccgagttta gatattttac aaaaaatatc aagtgaaaat agagcgaaac      2460
     atgatcttga taaagatttg gttacattta tggtaaatta tatgatcaac agcaagaaca      2520
     gatccgaggt gaaatactac acggttacgt acaagaattt tctttaatac cgttgtcagt      2580
     gattctgttt agtgaaaaac aaatcaaata cttagctgct aataaattgc gacatttaca      2640
     cctggatgca actggctcaa ttattgcaca gcctaaactt cttcatactg caactacgat      2700
     ttattactat gtactgctat taccaggaaa tatagacgtt gggcccttgc ctatagcaga      2760
     atttatatcg tcgaagcatg atattactgc aattaaacat tttttggatg tattcaatga      2820
     caatttaaaa aaaataacaa ccaaaaaaat aaaaaaaatc gaaacagatt ttagtctcgc      2880
     attaatacag tcggcctgca gaacttttaa tggcattaat ttacaaagtt atattcaacg      2940
     catgtatgaa gaatatgaaa aaaatatata watgaaagaa aatgtgacaa ttatattata      3000
     catatatgtt tttcctactt tataaagacg cctatacaaa aaataaagaa atgttatccg      3060
     gatagaaaaa cgcaaaaaca aatgcgttct atagcagcat cgctgttagc aaatacgtta      3120
     cattgtaatt gtgtatcagc tactgctgaa gtttatagcg tatttgtaaa actttttgga      3180
     aatgatcacg aaataaatga ctttgaccac gtaatacaat acgtgaaaat aattacagaa      3240
     gatgttaaca atatctcaga tgatagatat tcaccaccag aagaacaagc tgwaatgttt      3300
     tctttcgaca ggaaatcttc tttgtattac caggcattta aaaaaataga ggaaagtgca      3360
     caagaaaata acaaaatcaa ttcaaaactg aacccatttt tctcgaaaga gttttttgat      3420
     tacgtcacgg attttctaat gccatatttc ccwttgtggt ctgctacggg cattgcacaa      3480
     ttccactcct aagtcgggac agcaatgctc ctgtcgaaaa ttattttaaa attttaaaac      3540
     atcagatact ggacgaagaa acacgcatac ctgcacctag atttatacaa gcaaatttta      3600
     aaatwattga agcgcgatta caggaacgac agttttcttt aaaaactacg cgttgtaaag      3660
     aaaaaaaaaa gatcagtgat gacgaaaatg atcctgtcga gacatggaaa aaatctaaac      3720
     ctaacaaatt tttaatatat tctaaatttc taaaagacag caaaacgatt caacaaaatc      3780
     aagagactac aaatcaagag attacaatwt cacgtaaaga taacgatttt ccagaaaaat      3840
     gtaaatcagg atatcatgaa acagcagcag acaaattatt atttcataca aatatcagat      3900
     atcctgatgg gttccccgac ctaagaaaag atattaacgg gtacataatt gaaagtaaaa      3960
     atttcagaac gctgttacca gatcaatacc tggacgacac tattattaat gcatttttca      4020
     gccttttacc cagaacagca aaaamtaaaa acattccact gctatgtttt gatactcatt      4080
     tttgtcaaaa tatattaacg cgagggttcg ttagcgtcgg gtataataag tgggcaacgc      4140
     aaaacacagt gtgggactac cccatgtggt tcataccaat tcactttgca gctcattgga      4200
     cacttctggt gatagtccat tcacagcaaa ccatagtgta tttagattca ttacacggaa      4260
     gtccagaaga aagaatatta aatggaattt gcaattttat tcaagaacac gttggaatta      4320
     cctcgtggaa tgaatggaca ctacacactc cacgagacgt tccttcgcaa ataaaaaata      4380
     acaatgtagg cggaaattgt ggagtgcacg tatgcacatg ggcatacata attgcttccg      4440
     gttccttcac acaatttact gaagacgata tgagtgtggc acgtaaaggc atagcaagtt      4500
     atctagcaaa ttaagtttcg gacaaacgaa cggaaaataa agcaacaaaa tttcgacatt      4560
     taattttatc gaataatgag caacacttaa caactgagaa ctctgtttta aaatatttga      4620
     aaaaatcaga aagtgctcca ttccatttta taagtatatt cgaatttsca gcatctttgc      4680
     acttaataat tcaaagtgat aagccacaac cacagactag gcaacaaaag agagaaacgt      4740
     catactcgtc aaaaggagta tgtaataaaa aactttgtct ataagagaca tcatgtctgt      4800
     aagagacacc atgtctgtag gagacacctg tctgtaggaa acatgtctgt acaagacacc      4860
     atgtctgtaa aagacatcat gtctgaaaaa ctcaatawgt aaaaaagaga catcatgttt      4920
     ataagagaca tcatgtctgc aaaagacaaa catgatgtgc aaaatccgac cgtgcaacct      4980
     ccccgtggtg cacatcgggt aacgcaaatg mcggcggtat aaatgtattc atgtttaaaa      5040
     aaaaatttca aacataaata catttttttc aactcgcaat tcgtatacga catagctgct      5100
     aaataattgt taaattaatt aattttattt aacaattaaa attcgtaggc tcgttttgaa      5160
     taaattcact aattattaag aagagcttag gaaacgcgta agttaaagtt atctgactca      5220
     attcccgaca acatctaaac tcttcctaat aataagttaa atatatattt tttttaatga      5280
     aaaatgagtg ccgtccccgg gaagagcacc ttgccatcgt tttgtactct ccttggagag      5340
     tatctgtgat ttttttcawg tccctgtgcg tatgcgtacg wcgtggctgc taaattgttt      5400
     ataattaatt tttatttttt taatgaaaaa tgagtgccgt ccccgggaag agcaccttgc      5460
     catcgttttg tactccctta gagagtatct gtgatttttt tcatgtctct acgcgtatgc      5520
     gtacgatgta ggtgcatttt aatgtttttt aattccgggg gcactcagca ccctattcgc      5580
     ccctggcgac cgtcttctgg ctgctaggtc tggctgccag cttcagcttc att             5633
//
ID   MuDr-2x_AP  repbase;    DNA;    INV; 2999 BP.
XX
AC   .
XX
DT   21-APR-2008 (Rel. 13.04, Created)
DT   21-APR-2008 (Rel. 15.12, Last updated, Version 2)
XX
DE   A distinct, diverged MuDr-type family.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDr-2x_AP.
XX
NM   MuDr-2x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2999
RA   Jurka J.;
RT   "Highly diverged MuDR-type families.";
RL   Repbase Reports 8(4), 415-415 (2008).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1247..1843,1773..2525)
FT                 /product="MuDr-2x_AP_1p"
FT                 /translation="MCLFTATYKYMNIHYENDHNIIESVDNFEFESIDGFK
FT                 NWKHEIELSTQTLYVKNFGSSEKGNQIYSYYKCHRSGFYNSISKGQRHLKT
FT                 QGQGSNKINGYCPASINVIESKVTKRCNVKFNGNHIGYENEIGHLPLNTCN
FT                 RDDIAAKISQNIPFDRISDEIRDNITNNHLERTHLLTKKDLYNIEASYNLN
FT                 NEAVPTSFKLKKIYIILKLHIISIMRQYLHHSNDATSVGAWVEKLKSDDKL
FT                 SLVYYKSQGQIDTNYLELKEDDFLLLIMNDYQKSMLNKFGNDVICIDETRG
FT                 MNSYHFNLTTIMVLVDLREGFPCSFMISNRVDEAVLRIFFAEIMDKTGIIQ
FT                 PNVFMSDMAESFYNAWVVEMKPAKHRLYCTWHIDRAMALRIHIILNNKPHF
FT                 YTHIYESQEHSIFRYTIVVKSNAPSATQICILKRLFYNLYCYFYIFIFLML
FT                 KKTST"
XX
SQ   Sequence 2999 BP; 1096 A; 416 C; 424 G; 1063 T; 0 other;
     acaagcgtct agcgagtagc gacagggaat ccgaatggct gcaagatggc cgacttcgtt        60
     atcatgatcc gttatcacca attttattat caatttaaaa aaaaaaaata tatttctttc       120
     ccttacctta tttagttatt tcgaacgaag ctgtataata atttattata aataagttct       180
     actaagtcta atacagtaat tcaacaggta aaatgaactc agtacatcca gtacttctta       240
     aaatatttgt gtttgagttt ttactaattg ttaaaaaatt tgcctgtttg attaaatgta       300
     caatattgtg aaagctttca ctacatgagt ttaaatgttt tattcatccc ttttcttgat       360
     gtactggaat attctttaat tgtgtttgat ttctcctatt atgcatttag ataatatttt       420
     gattattttt tttatggttt ttgttattta tgttatggag gcctaagaat gtcactctca       480
     ggttgatgtg caatcagatt acctacttcc atgttccttg tgaagtttct cagggcggtc       540
     acttgtcttt gtcaccattc ctatgtacat gatgatggag ctggccagca aggatccatc       600
     attcctattc tcaattatta atatttaatt gtatttgtat tacaaatgca ttgtaattct       660
     attattattt tgttttcaat tttaatttca attaaagaaa tttagtgttt tcataatttt       720
     aattggggca accctaatat attataaata aataaataaa tatctaatta ttattctaat       780
     ttgtcaaatt ataaatgtgt ttaatgtgct atttgaatat gtattgtaaa attgtttcat       840
     ggttgttata agtatttaat aaaataaaaa ttcacaaaat aaatgtctat ttattaacaa       900
     attataaaat tataaatttt atttctgtaa atacaataaa tatgcatcaa tattttattt       960
     tgttaaatta ggtttttaag aacatgtcag acataaatga attcaaatgc atagaatgtg      1020
     agaaaaagtt taaattttta aaaaacttaa gagctcgcat aaaaacaaat catcctcttt      1080
     taaagttgga tgaaatagca ccaacaaaaa aacgaaaaat agtaatttgt atatatttac      1140
     atgtgaccag tgtacaaagt catattgtca tcaaaaaaat ctaattgaac acaaaaaagt      1200
     tgctcattca attgctccaa caattgaaat tatagtcgaa tgtgccatgt gtttatttac      1260
     tgccacatac aaatatatga atatacatta cgaaaatgat cataatatta tagaaagtgt      1320
     agataatttt gaatttgaaa gcattgatgg ttttaaaaat tggaaacatg aaattgaact      1380
     atccacacag acattgtatg tcaaaaattt tggttcctct gaaaaaggaa atcaaattta      1440
     cagttattac aaatgccaca gaagtggttt ctataattca ataagtaaag gtcaacgtca      1500
     tttaaaaaca cagggacagg gttctaacaa aataaatggg tactgtccag ctagcattaa      1560
     tgttatagag tcaaaggtta ctaaaagatg taatgttaaa tttaatggca accatatagg      1620
     ttatgaaaat gaaataggac acttgccttt aaatacatgt aacagagatg atatagcagc      1680
     taaaatatca caaaacattc cctttgatag aatttcggac gaaattcgtg ataatattac      1740
     caacaatcat ttagaaagaa ctcatttgct aactaaaaaa gatttatata atattgaagc      1800
     ttcatataat ctcaataatg aggcagtacc tacatcattc aaatgatgct acaagtgttg      1860
     gagcatgggt tgaaaaatta aaatctgatg acaaattaag ccttgtttat tacaagtcac      1920
     aaggtcaaat tgacacaaat tatttagaac taaaagaaga tgatttttta ttgctcataa      1980
     tgaacgacta tcaaaaatcc atgttaaaca aatttggaaa tgatgttatt tgtatcgatg      2040
     aaacgcgtgg gatgaattcg tatcatttta atttgacaac aatcatggtt cttgttgatt      2100
     taagagaagg atttccatgc tcttttatga ttagtaatcg agttgatgaa gcggtcttga      2160
     gaatattttt tgctgagata atggacaaaa ccggtattat tcagcccaat gtcttcatgt      2220
     cagatatggc tgaaagtttt tataacgctt gggttgttga aatgaaacca gcgaaacata      2280
     ggctctattg tacatggcat atagatcgtg ccatggctct acggattcat attatattaa      2340
     acaataagcc acacttttat acgcacatat acgagagcca ggaacacagc atattcagat      2400
     ataccatagt cgttaagtcc aatgcacctt cagctactca aatatgcata cttaaacgac      2460
     tattttacaa tttatattgt tatttttata tatttatatt tttaatgttg aaaaagactt      2520
     caacataata tcatagatct ctgatggtca gtatacaaca attataacgt atttgacaac      2580
     taattattac ttactaacta ttatgaatta tatgaactta catattacca tttgtatatc      2640
     tatttcaata tctcattata tatgaattat gaattataaa ttataaaaca tagaattata      2700
     ataactataa aaaactgtac aatgtacttt gtaaatcgta attcttaaat cctaacctaa      2760
     gattataatc ggtgctaact actaacctgt taactaataa taattattgt taattaactg      2820
     aaatatcaat gggttaccaa ctttaatacc caatacccaa ttattattaa tattattaat      2880
     catcatgatt ttcaatagaa aatgatatta ggtatgataa taaaatcggt gataacggat      2940
     catgataacg aagtcggcca tcttgcagcc attcggattc cctgtcgcta gacgcttgt       2999
//
ID   MuDR-2_MyPe repbase;    DNA;    INV; 4927 BP.
XX
AC   .
XX
DT   12-SEP-2019 (Rel. 24.09, Created)
DT   12-SEP-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon, a partial sample sequence.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-2_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-4927
RA   Bao W.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Direct Submission to Repbase Update (12-SEP-2019).
XX
DR   [1] (Consensus)
XX
CC   Extracted from a single locus. Termini are indeterminated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(926..1271,1351..1683,2507..3711,3850..4188)
FT                 /product="MuDR-2_MyPe_1p"
FT                 /translation="MEKTVIKCTDCEATFTLKKNMYAHCRNIHKIEHLSKK
FT                 PKMSQCHICDVKFVNKKCLFQHMKTFHNNSTNEKHTRIICPYDLCEEYLFT
FT                 SLKLREHLCVKHNITVELEEITFDNLKEFETWKQKIEKETVSMYVLDTGAK
FT                 KLFNGILKQYYFCYRSLNYRKSGNNLRLMKSMGSNKIGKTCPSKLETTIVE
FT                 TNGVASVKVKYWKTHCGHAQEIGRLKIDKENRAMIAAKLKEGVTWEHILDF
FT                 IREGEITDDTNQRILLLERQDLTNISRDFNINYATRRHKNDAVSVDLWVNE
FT                 LKNQLKEDCPILYYKAQDKDDNFLEKKDFALIIMTKFQAKQILKFGPNKIC
FT                 IDGTHGTNAYDIQLYTIMTVDEYGTGCPVAFCFSNRVHETIFTLFFNQIKT
FT                 KVGIIKSKVFMSDDAPAFYNAWVNVMGPAEHRLLCTWHVDRNWRDNLSKIS
FT                 GGSEKKSLVYKTLRVLLQMISIDDFKISLDQFINDLLADKDTEAFGSYFVQ
FT                 HYSKRSEVWAYCYRLRLGINTNMYLESYHKVLKHIYLEGKKCKRIDKTINA
FT                 VMKLARDSMFKRLIKVAKNASNSKSRKIHESHKSSESISSDKIQILEGGQS
FT                 WIVNSLTNPSEKYCVARADKTCNEPCLKCSEDTIIGEQEELIEMISQPSMK
FT                 CTTLSTPGISGKIINKVELIRSLCATSKVSEEEDMLLNKKLDDIINMLNKT
FT                 KKLHLNTVENVNIQKKXLYTSKNNTLQYYEYEESLRFYPL*"
XX
SQ   Sequence 4927 BP; 1809 A; 610 C; 705 G; 1802 T; 1 other;
     tttttttgga tatttacatt ttcaacagta ttaagatgga gttattttgt tttgtttaac        60
     atatttataa tatcatccaa ttttttatta agcaacatgt cttcctcctc actaactttg       120
     cttgtagcac atagactacg gataagctct actttattaa taatttttcc acttatgcca       180
     ggtgtactag gtgtagtaca tttcatagaa ggctgagaaa ttctctatca attcttcttg       240
     ttctccgata attgtatctt ccatatgttt taaaactatt aaaggattgg gttgttataa       300
     atttctaaca ataaaatgtt aaattatttt tattcttttt atttataaag ttactattaa       360
     tttcaaattg taaaatgtaa atacatataa aaaaaaatag tatattataa attattttaa       420
     tattactgta gagctagaag atatcttttg atttaaaagg tatattaata cattattaat       480
     atatttggta tattataata atattatata gttttataaa ttctttacat gatttaggtc       540
     ataatttagg ccagtaattt ttttcataaa tattaaatta cagttcattc ttttttttat       600
     atacatattt tatgtcttta gagcagacaa atattatagc attttatagc agacatatta       660
     tattatatta taacattaat gtagagcttg aagtgattac atttcattta aaaggtacct       720
     atgtattaat atattattat atatatatta tatattatta tcaaatattc aaatgtatta       780
     tttatgttga attttattat taattaatag gtagcatttg tttcatttac attatcattt       840
     ttatgcaatc tttattttct tgttgaatat aaagtcattt gaccactaat tttttttttt       900
     ttttgatatt aataacaggg tcaatatgga gaaaactgta attaaatgta cagattgtga       960
     agcaacattt acattaaaaa aaaatatgta tgctcattgc cgtaacattc acaaaattga      1020
     acatttaagc aaaaaaccaa aaatgtctca atgtcatatt tgtgatgtaa aatttgtgaa      1080
     taaaaagtgt ttattccaac acatgaaaac atttcacaat aattctacaa atgaaaaaca      1140
     tactagaata atatgccctt atgacttatg tgaggaatac ttatttacat ctctcaaatt      1200
     aagagaacac ttgtgtgtta aacacaatat tacagtagag ctggaagaga taacttttga      1260
     taatttaaaa ggtacattaa actattatag tgactcatta tacgtctcat gttatgatag      1320
     atttcctatt cattttttca taatttatag aatttgaaac atggaagcaa aaaatagaaa      1380
     aagaaacagt ttcgatgtac gtattagata ctggagcaaa aaaattgttt aatggaattc      1440
     ttaaacaata ttatttttgt tatcgctcat taaattatcg aaaatcagga aataatttaa      1500
     gattaatgaa gtcgatggga agcaataaaa ttggtaaaac ttgtccgtca aaacttgaaa      1560
     caacaatagt agaaactaat ggagttgctt cagtcaaagt aaaatactgg aaaacgcact      1620
     gtgggcatgc tcaagaaatt ggtcgattga aaattgataa agagaataga gcaatgattg      1680
     caggttcttt atttatatac atataaatct tatacagaat tattaaataa taatatcgac      1740
     gtttgtcgtt tttatggttt atggctatca aaaaccttta tgtgctgtat ggtgaagtac      1800
     ctattcaata gttagtaatt ttacactttg tgggcaaatt aaatgtttta ataattatta      1860
     ttgttatcct tcattaaata tcagttttat ttgttaatta tttcatgttt tagttaattg      1920
     tgaatttatt ctatgtttta gttagttgtg attttattat atgttttagt taattgtgat      1980
     ttaattctat gttttagtca attgtgattt tattctatgt tttagttaat tgtgatttta      2040
     ttctatgtta tagttaattg tgaatttatt ctatgtttta gttaattgtg attttattgt      2100
     agtttgtcat tattcatttg ctaaattaaa ttagtaacat ttctatagtg agtatattta      2160
     aaaactccaa aaatcagaat taataccatt actaagaaca aaacaggggt taccatgctt      2220
     ggtgaatcat actgtataat acaatttgta actaatatca aagaacaaac ctaatattta      2280
     tgttgtattt ttaatactag cttatttacc taattaatat tatttatttg tataaaatat      2340
     aaatatatgc agaagcacag acaggatttt tttttgtaac gggttgtgct tatagtttcc      2400
     accactccat ctatgtgcgc aactgaatat ataagttatt attattcatt aaattcatgt      2460
     ataaaatgca tttgtattaa gtataaagta ttaaaaatta tttcagctaa attgaaggaa      2520
     ggtgtaactt gggagcatat tttggatttt attcgtgaag gtgaaattac tgatgatact      2580
     aatcaacgaa tacttcttct tgaacgtcaa gatttaacta acatatctcg tgactttaac      2640
     attaattatg ctacaagaag acataaaaat gatgcagtca gtgttgacct atgggtcaat      2700
     gaactgaaaa atcagcttaa agaagattgt cctatccttt actataaagc ccaagataaa      2760
     gatgataatt ttttagagaa aaaagatttt gctttgatta taatgacaaa atttcaagca      2820
     aaacaaatac tgaagtttgg tcccaataaa atttgtattg atggaactca tggtactaat      2880
     gcttatgaca ttcagctata taccattatg acagtggacg aatatggcac aggatgtcct      2940
     gtcgcatttt gtttttcaaa tagagtacat gaaactatat ttacattatt ttttaatcaa      3000
     attaaaacta aggttggcat cataaaatcc aaagtattta tgtcggatga tgcgccagca      3060
     ttttacaacg cttgggtcaa tgtcatggga cctgctgaac ataggctctt atgtacttgg      3120
     catgttgata gaaattggag agataatttg agtaagatta gtggaggatc tgaaaaaaaa      3180
     tcgctcgttt acaaaacgtt aagagtgttg ttacaaatga tatctattga tgattttaaa      3240
     atttctctag atcaatttat aaatgattta ttagcagaca aagatactga agcatttgga      3300
     tcatattttg tacaacatta ctctaaacga tcagaagtct gggcatattg ttatcgtttg      3360
     agactcggca ttaacaccaa catgtactta gaatcgtacc ataaggtttt gaaacatatt      3420
     tacttggaag gtaaaaaatg taagcgcatt gataaaacaa ttaatgcagt gatgaagtta      3480
     gctcgtgaca gtatgtttaa aagactcatc aaggtagcaa aaaatgcatc aaattctaaa      3540
     agtagaaaaa ttcatgaaag ccataaaagc agtgaatcga tttcatcaga taaaatacag      3600
     atccttgaag gtggacagtc atggatagta aattcgttaa caaatccctc tgaaaaatat      3660
     tgtgttgcca gagctgataa aacatgcaat gaaccctgtc tgaaatgttc agtgtgtaat      3720
     atttgcatac atacatttac atgtgaatgt attgacaata taattaaact aaacatttgt      3780
     aaacacatac atgcttgtgc acaagcattc aacaaactac ctgattacag cagtaataca      3840
     ttttattagg aagatacaat tatcggagaa caagaagaat tgatagagat gatttctcag      3900
     ccttctatga aatgtactac acttagtaca cctggcataa gtggaaaaat tattaataaa      3960
     gtagagctta tccgtagtct atgcgctaca agcaaagtta gtgaggagga agacatgttg      4020
     cttaataaaa aattggatga tattataaat atgttaaaca aaacaaaaaa actccatctt      4080
     aatactgttg aaaatgtaaa tatccaaaaa aaaanacttt acacttcaaa aaataataca      4140
     cttcaatatt acgaatatga ggaatcacta cgtttttatc cactgtgaat atcacagtgt      4200
     gaataaaaag caccttctac agaaatataa atatcactgg caatcccaat actaataata      4260
     catgttggta ctatatatta ctactaaaac atttgggacc tatgattatt tacaataaat      4320
     aatagttata atactattta aatttatgcg ggaaattttg gtatattatc atattatgca      4380
     tagaacctta tattataaac cgtgatttat taattataaa cataagaatt atggttctat      4440
     gataatatag acactgagat agataaaaat atacttatca cggttaaaga tatacaggtt      4500
     agctatcgct ggcccgccac tcggtcagat tgtgttacca ttcagtagtt catattttca      4560
     ccacacgcgt aaggcgctag tagtaagtag ggtcatattt tactattggt aatattagta      4620
     catcgtagta tcggtacatt tctagttgct acataataga atattagaat ttatatgatc      4680
     atacatttaa tataacttat aattaaaaaa tatatttatt ccaatattaa tattactcgg      4740
     ggatggtact ggagaaaata aaaaatattc aatcatcttc aaaacatttt aaataatcct      4800
     taggcccagc taataattac ataagttatt attaatattt tgtttatgat attaaaaagc      4860
     tataattgag tatgtggtct acctacctta tataactaaa attatgttat cgtgcatcca      4920
     ttttaac                                                                4927
//
ID   MuDR-2_SIn  repbase;    DNA;    INV; 5712 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 19.02, Created)
DT   22-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   MuDR-type transposon sequence - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5712
RA   Jurka J. and Kojima K.K.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 346-346 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. Only 2 copies. Both termini are
CC   uncertain. Rehavkus-type.
XX
FH   Key           Location/Qualifiers
FT   CDS           2624..4189
FT                 /product="MuDR-2_SIn_1p"
FT                 /translation="MSTKRGRPRLYDEKLITSTILQYKDSLVDTNNKIISK
FT                 NSKIWTDISRQLNNIISENGLYTMTVKNRFELKSQILNADIKQISDLNVSS
FT                 DLSCSNISATSSINKSDDDNDNSIKISFDRTDLENLIVIKQYARSEKSRPQ
FT                 IRFRKYEILQPGVWQQLVTEKLWNSYKIKCGYNFKRNKIYNNTITIEGKCN
FT                 CGSIINGIINNVNLETDNIMNCIRTKGTGICGKRFLRNPEQMQIGQMLWDR
FT                 HLTAEVYRAERAEELMEINDPEPSHLYKAKSLRNVKQEYCQYLCFNKDPLK
FT                 SLLIGQESTYKNMIHNLGLNPFFVYYWTSHQIAIYRKYAARGYTSVAIDAT
FT                 GSVVRKINRPNNNKSKHIFLYSCVLNNTDNNFAITQMISECQTTNAISFWL
FT                 MEWLRTKIPVPKEVTCDSSKALLTAIIRVFTNYKGIDEYVAKCWESDMPSC
FT                 YIRIDVAHFVKSYANFLKSINPRVKTFFFKCIGQLILAQTLQEAEEILSAI
FT                 IVISKSETEDFFLTEHLHSPKYTKKK"
FT   CDS           4189..5430
FT                 /product="MuDR-2_SIn_2p"
FT                 /translation="MKLILTDNESIPFEKDFDSLQDTELDLDISDDDNTYG
FT                 EWANNIYKKLLNALIDNGNRANAHFYPSLVDHIMRDIKWYPLWSCICLRKF
FT                 GYGRIPASSAVVESEFNNIKCRLFASALPTRADLFVFRHIDYINGRIKLVE
FT                 AKSINVPFEKKKNLEIIKTESNKVQNLSINDALVLTDTCSARKSGDKLKNE
FT                 YLCIVCNTPVHMSNECSKIFDNEEHSTQRICTSCQNIPKTDIVNAIDSNEL
FT                 ENWRGLSLKSEKKXRYLEKNNITFDLKETKLKNIPILRXGSSINLKPINIK
FT                 GKKIXIIQTCAFDSIFEIFLILLFQSEHFKTAVTDISDTNTFLQIILDTFA
FT                 NGLTKHTYYLRCVILYDVFEAKETCDNCFLLNCETSIGHLCKKLFHNISSV
FT                 RLLHVMYVAICERKHFQQSI"
XX
SQ   Sequence 5712 BP; 2066 A; 840 C; 894 G; 1892 T; 20 other;
     tttgcgctgc aacccttaag ggacttctcc cctgacgtca gagacaaaac cttcatgaaa        60
     tgcctttaaa atgaaaggga tagttgaaac aattatgtac gattaatcta cgatttatgc       120
     gcttccacat ccacgcggtt tcaattttta cactgccact cctgaggtac ttctcccttg       180
     agacgtcaga gacaaaatcg ccataaaatg tctctgagat gaaaaagatc gttaggacaa       240
     ttatgttaga stacagttaa aaattcaata tttaacacac tgattgctgt aaaatgttct       300
     gcaacattct tctcaatatt cctggtattt ctcggttgtt tgaaaaccat aatgtttctt       360
     agtttatatt tttctttcgt aaatgtgcat tgtaatttaa tataaacaat gcttttcaaa       420
     attgactttt aatttaactt amggkgmtct aatcttaasg tgatttttaa ctaattttaa       480
     ctaattaatt tttagttcat gtaactttaa acgtagctaa attagtttca tagaccatta       540
     attttactat tattttaact tcatttggtt gaaaawttat attaacttaa atctggtmat       600
     cactggtaaa cctagtaata ctacttgcta ccgttgtaaa atgttcgctt tggaataacg       660
     aaattaaaaa tatctgaaca atactatawa agacaggttt aaattatcga cattttttwm       720
     atgttatgtt aattagtttt aaactaatat tgcttccatg tcgtataatg ggaatatatt       780
     gtcgcttaat aaataataga gcgttactga cattagaaaa gaattgcgaa aataaatttt       840
     tcaccatcaa ctaactatgt kttcaatctg tgtttattta atattaattc aagcccggtt       900
     ttaccaatgt tattttggct ttaagcgaga cttaaatatg tgtctaaata aatacagaca       960
     catatttaag tttcscttaa aatcaaaatt acgttgatcg ggcctcagcg tttcaagcat      1020
     catccttgtt atacatatgt atatagcgtt tttccttgtt atttattaag tattaaataa      1080
     ggagaaatga tgcttacaac cgctgtgagc gctgaaacaa acgctgcmtc agactgctga      1140
     aaatcaaacg attatctaaa agcgaaacga amatcgcgat gttcttttat ctgtcgacga      1200
     cgtccaattt gtcgaatgac tttagtatag aaagacagac agtgtgaagc tcacagtatg      1260
     tcagtaagtg tgtcacatgt tgtgtaatat cgcagtatta gaaaaatctc cattttattg      1320
     tgttgaattt aatataagta tctttctcgt ttgtcgaaac atctctattc tttcaccttt      1380
     gatattaatc tcatctgcag caagtaactg aagtacctgc actgcaaaaa gaatttggta      1440
     agaatagtca agtttaaatg atagttatta agcgttggtg aaattatttc aattaaatat      1500
     tgaattaata caatcaaaac attaatctct cgatttacgc gatattttat ttattaagcg      1560
     ggattttttt acgtgattaa ttagccctca tttacatctt tcatcttttt tacatgatca      1620
     caaatatatt tctatatttc tttgatattt attggaacta ttctatattt ataagccaga      1680
     agtttttatt tgattgtact tattatatcg gttgactgcc ttagaataaa atacaataaa      1740
     taaattttag aagaaggctt tcttactatc attgtgttgt tacactatcg gtccaataac      1800
     atatttgtaa tttgaatcac gcgcttcaaa tgcgttgtca ctcatatacg aatattgcga      1860
     gaagtgtcac tgtgccccag tggtcgaggt ggtaagacac cgggaccgga gattccggag      1920
     gtgccaggtt cgaaccctgg gtggggtgtt atttttcgca ataaatttct tacagttttt      1980
     tcagggggga atgagtatat agatgcaaat cagcatcaat tattatatta attaattaat      2040
     taatataaat agtgatatta ctaattctta ttcgacatgc tgtgttccga ccgaaaatta      2100
     attcggcgca cattctggtt gaattcggag aagtatataa aatcacacaa ataaatataa      2160
     gcactaagac ctagctgcga ccgaagaagg ctttcttact atcattgtgt tgttacacta      2220
     tctgtccaat aacatatttg taatttaaat aaattttaat ttgttttttt taactttcat      2280
     tattgtttct gtgtaaatat gtgaaagaac tatgattaca atttacatgg agttttttta      2340
     cttattttat tttgcattag aagcctccat ttacataatt ctcagcctcg tgaaaaacat      2400
     agaacgaaag gaccagtgca cttagtaata tttagtaaat gttttgttac tattatgtgt      2460
     ttggttaatg taattactaa atattaatta ctattaaata tatggttata ttaactaaac      2520
     atttaattga aattatttca ccaaacttga ttgtaattac attattaata tcaaattctt      2580
     ttttcagtgt acaacaaaac aaatcgatct tgtattctgc attatgtcta caaaacgtgg      2640
     tagacctcgt ctatatgacg aaaagttaat aacatctacc attttgcaat acaaggatag      2700
     tttggtggat acaaataaca aaattatttc caaaaacagc aagatttgga cagatatatc      2760
     acgtcagttg aataacatta tctcagaaaa tggtttatat acaatgacag taaaaaatcg      2820
     tttcgaattg aagagtcaaa tactaaacgc tgatattaaa caaatatctg atttaaatgt      2880
     atcaagcgac ttaagttgtt caaatattag tgccacttct tcaataaata aaagcgatga      2940
     tgataatgat aattctatta aaatatcttt tgataggaca gatttagaaa atttaatcgt      3000
     aataaagcaa tatgcacggt cagaaaaatc tcgtccacaa atacgattcc gtaagtacga      3060
     aatattacaa ccaggtgtat ggcagcaact tgtaactgaa aaactatgga attcctacaa      3120
     aataaagtgt ggctataact tcaaacgaaa taaaatttat aataacacaa ttacgattga      3180
     aggcaaatgt aattgtggat caattattaa tggtattatc aataacgtaa atcttgaaac      3240
     tgataatatt atgaattgca tccgtacaaa aggaactggt atttgtggaa aaagattttt      3300
     aagaaatcct gaacaaatgc aaatcggtca aatgttatgg gataggcatt taacagcaga      3360
     agtatataga gctgaacgtg cagaagagtt aatggaaata aatgatccgg aaccgtcgca      3420
     tttatataaa gcaaaaagtt taagaaatgt aaaacaagag tattgccaat atttatgttt      3480
     taataaggat ccgcttaaat cattattaat aggacaagaa agtacatata aaaacatgat      3540
     tcataatttg ggattgaatc ctttttttgt ttattattgg acaagccatc aaatagctat      3600
     atacagaaaa tatgctgccc gaggttacac ttcagtcgct attgatgcaa ctggtagtgt      3660
     tgtaagaaaa atcaatagac ctaacaataa taaatcaaag cacatttttt tatattcgtg      3720
     tgtgcttaac aatacagata ataattttgc aataacacaa atgatatctg aatgccagac      3780
     gactaatgca atatcttttt ggctcatgga atggttgcga acaaaaatac ctgtgccaaa      3840
     agaagttaca tgtgattcgt ctaaagcttt attaacggct ataattcgag ttttcactaa      3900
     ttataaagga atagatgagt atgttgcgaa atgttgggag agcgatatgc cttcatgtta      3960
     tattcgtata gacgtagcac attttgtaaa aagttacgca aattttttaa aaagcataaa      4020
     tcctcgcgtt aaaacatttt tttttaaatg cataggacaa ttaattcttg cgcaaacatt      4080
     acaagaagca gaagaaatac ttagtgcaat aattgttatt tctaaaagtg aaactgagga      4140
     tttcttcctg acggaacacc tacactcacc gaaatataca aagaaaaaat gaaacttata      4200
     ctgactgaca acgaatccat accttttgaa aaagatttcg attccctcca agataccgaa      4260
     ctagatttag acatatccga cgatgacaac acatatggtg aatgggctaa taacatttat      4320
     aagaaactat taaatgcatt aattgataat ggaaatcggg cgaatgcgca tttttatcct      4380
     tccttagttg atcacataat gcgtgatatc aaatggtacc ctttatggtc atgtatatgt      4440
     cttagaaaat tcggatatgg taggattcct gcctcgagcg cagtcgtaga atccgaattt      4500
     aacaacataa agtgcagatt atttgcaagt gcattgccaa cgagggcaga tttgttcgta      4560
     tttcgtcata tcgattatat taatggacgt ataaagcttg tcgaggcaaa aagtattaat      4620
     gttccttttg aaaaaaaaaa aaatttagaa ataattaaaa cagaatcaaa caaagtacaa      4680
     aatttgtcta ttaatgatgc attagttctc acagatacat gctcggcacg taaatctgga      4740
     gataaattaa aaaatgaata tttatgtatc gtgtgcaaca cgcccgtgca tatgtccaat      4800
     gaatgctcta agatatttga taatgaagaa catagcacac aaagaatctg tacttcatgt      4860
     caaaatattc ccaaaacaga tattgtaaat gctatcgaca gtaatgagtt ggagaattgg      4920
     cgcggattgt cattaaaatc ggaaaaaaaa tmgagatatt tagaaaaaaa taatataact      4980
     tttgatttaa aagaaactaa attaaaaaat attcccattt tacgawatgg aagcagtatt      5040
     aatttgaaac caattaatat aaaaggaaaa aaaatatsga taattcaaac ctgtgctttc      5100
     gatagcatct ttgaaatctt tttaatttta ttattccaaa gcgaacactt caaaacagca      5160
     gtaaccgata ttagcgatac caatactttt ttacaaatta ttttggatac atttgcgaac      5220
     ggattaacwa aacatacata ttacttaaga tgtgttattt tatacgatgt ttttgaagct      5280
     aaagaaacgt gcgacaattg ttttcttcta aattgtgaaa catcaatagg gcatctttgt      5340
     aaaaaattat ttcataacat aagtagtgta agattacttc atgtaatgta tgtagcaata      5400
     tgcgagagaa aacatttcca acaatccata taaaattaga agagttattg gagccgacat      5460
     ttccaagtac cgttgaaaag aactttatgt taaaaccaaa acgttgccaa aacatggaac      5520
     tagaaaatac aaaatgcacc ggcacacaaa gtacaaaaat ttcagaagtt ggtaaatata      5580
     attgaaatgt gacacaagaa acataatcaa atacgagaaa aagtgaggtg acggttgcaa      5640
     ttatggttca aawtttaaat ataggtcaaa tttgaaaaat taaatgtttt acagacatat      5700
     acatatwtat at                                                          5712
//
ID   MuDR-N1_HSal repbase;    DNA;    INV; 2373 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   MuDr-type DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   MuDR-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-2373
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1007-1007 (2014).
XX
DR   [2] (Consensus)
XX
CC   A few copies, ~90% identical to consensus.
XX
SQ   Sequence 2373 BP; 731 A; 437 C; 446 G; 756 T; 3 other;
     agctctgtga agctggcacc cccaaattcg aattttcata aaccacaagt agcattcgtt        60
     gtccacgatt tgtccacatt tgtccaacat aaattttcat ttgtccacct ctcaaaaaaa       120
     agttatgagc aaataaaaat tttgacacca gcacccccat gaaaatattt cttcaatttc       180
     aagcaccatt agattgtcca cgatttgtcc acatttgtcc aacaaaaatt ttcattcgtc       240
     cacctttcaa aaaaaagtta tgagcaaaag aaatttcgac accagcaccc ccatgaaaag       300
     atttcttcaa tttcaaaaca ccgctggatt gtccacgatt tgcccacgtt tgtccaacca       360
     aaatttttgt ttgttcccct ttaaaagaaa gttataagca aattaaaaaa ttgaaagtat       420
     gcggaagagg aggcgcccca gatacgaata tatataaaaa ttagcaggga ttcgttcgtc       480
     cacgatttgc ccatattaat ccaactaaaa tctccatttg cccaccttgt aaaatatagt       540
     taaataaaga aaataagaaa aagcaatttg cttacaagaa cacttttctg aaaattaagc       600
     actgcaatcg tttgtccacc cgttgttttc gtttgtccat gcattatttt cgtttgtcca       660
     cccaagggaa tcgagtaatt aacaaaaaaa ttaaaaaact tgactataac cgttctatgt       720
     acatgtgtca agttttctgt agattgaggg ttggaatcgt ttgtccaccc gctgctttcg       780
     tttgtccatg cattattgtc gtttgtccac ccaagggaat cgagtaatta acaaataaaa       840
     ttgaaatacw tgacgacaac cgctctacgt aatgtgccaa gttttctgta gattgagggt       900
     tggaatcgtt tgtccacccg ctgctttcgt ttgtccatgc attattktcg tttgtccacc       960
     caagggaatc gagtaattaa caaaaaaaaa ttaaaatact tgactataac cgctctatgt      1020
     acatgtgtca aagttttctg cagattgggg gttggaatcg tttgtccacc cgctgctttc      1080
     gtttgtccat gcattattgt cgtttgtcca cctaagggaa tcgagtaatt aacaaaaaaa      1140
     agttgaaata cttgacgaca atcgctctat gtacatgtgt caaagttttc tgtagattga      1200
     gggttggaat cgtttgtcca cccgttgctt tcgtttgtcc aggctgttgt cgtttgtcca      1260
     cccaagagaa tcgagtaatt aacaaaaaaa attaaaatac ttgactacaa ccgctctacg      1320
     tacatgtgtt aaagtttttt gcasatgtac gtagagcggt tatagtgaag tattttaatt      1380
     ttttttgtta attactcgat tcccttgggt ggacaaacga caataatgta tggacaaacg      1440
     aaagcagcgg gtggacaaac gattccaacc cccaatctac agaaaacttt agcacatgta      1500
     catagagcgg ttgtagtcat gtatttcaac ttttttttgt taattactcg attcccttgg      1560
     gtggacaaac gacaataatg catggacaaa cgaaagcaac gggtggacaa acgattccaa      1620
     tcctcaatct acagaaaact gtgacacatg tacgtaagcg gttgtagtca agtattttaa      1680
     tttttttgtt aattactcga ttcccttggg tggacaaacg acaataatgc atggacaaac      1740
     gaaaacaacg ggtggacaaa cgattgcagt gcttaatttt cagaaaagtg ttcttgtaag      1800
     caaattgctt tttcttattt tctttattta actatatttt acaaggtggg caaatggaga      1860
     ttttagttgg attaatatgg gcaaatcgtg gacgaacgaa tccctgctaa tttttatata      1920
     tattcgtatc tggggcgcct cctcttccgc atactttcaa ttttttaatt tgcttataac      1980
     tttcttttta aaggggaaca aacaaaaatt ttggttggac aaacgtgggc aaatcgtgga      2040
     caatccagcg gtgttttgaa attgaagaaa tcttttcatg ggggtgctgg tatcgaaatt      2100
     tcttttgctc ataacttttt tttgaaaggt ggacgaatga aaatttttgt tggacaaacg      2160
     tggacaaatc gtggacaatc cagtggtgct ttgaaattga agaaatattt tcatgggggt      2220
     gctggtgtca aaatttttat ttgctcataa cttttttttg agaggtggac aaatgaaaat      2280
     ttgtgttgga caaatgtgga caaatcgtgg acaaacgaat gctacttgtg gtttatgaaa      2340
     attcgaattt gggggtgcca gcttcacaga gct                                   2373
//
ID   MuDR-N1_LMi repbase;    DNA;    INV; 1878 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.11, Created)
DT   12-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   MuDR-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1878
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3017-3017 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus. TSDs are 8-bp or 9-bp long.
XX
SQ   Sequence 1878 BP; 604 A; 324 C; 384 G; 566 T; 0 other;
     acaggcgtct agggacagta gtgcgtcgga ccccagttac ccgtacgaac cgatagatgt        60
     ctctacggtt atgctaccat gatgctatgc gactccaggg cttctattta tcattcctgc       120
     tgtttaattt acgtaaatat ttctaccttc gtattttgac attcgaaata tgaatcattc       180
     taagacttca gtattactgt aatagaagtg tgtctgtaat attccatgat atttctgtaa       240
     cactgcgcta ttaaaatgac aagtaagact ttccagcagt ctaaaacttg aagttcgaaa       300
     cttaaactgt aaaaagacgc aacataaagc agaggatact ttcctgataa ataaagcgga       360
     aagcagagct gaggttctac atgaatttct gttttgttat tgagaatatt cacgtgttag       420
     ttttcgagtg tcatttgcat gagaatgaat ggcactggtg tattaaatat tgttattatt       480
     tcacagatgg tgacagaaaa gatcggcttt tagaggaaac tgaatgtatt cttttttcgt       540
     tgacggtggc gcctgaagaa ttggcgatat tatgtcaatt tagcttacgg cgaaagtggc       600
     ggtggcacta gatattttgt tttgtaggtt tatttagtaa atttttggtg gtaatatagg       660
     tgacaggagc caacgcctga aatggcaaag cttagggaaa aacaacaaaa gagaaaaagc       720
     aaaataaaag agaaaaacag atgtgtgtgt gtgtggtgtg tgtgtgtggg cggtggttcg       780
     tttctcgctt ccgacaatat ttttattttt caccttgact cccaaaagtt ttctgacaca       840
     tttattaaat agaatttacg agttgcgata ttccgacata tttgcaagta caaccgcttt       900
     ttcttaaaag tgcgtttgtt ctatttagtg aacatgccgt gaaatatggt ccaacaaatt       960
     gtaaacactg tcttctgaac tacagtacct gcacataaag tgcggacaca ttgttatagt      1020
     gaatgttgca aatgacatgc tgatacaaat agtttcatac atttactaga aaatacaaag      1080
     ctcttgagat cagttaaatg gctacagtat tagcgcaatt actcacaaac aatgcatata      1140
     ggacgcaaga acgtgtataa cagctgttgc aaaaaaggaa caaggcactt cagtctcatt      1200
     aagaaacgac agttgccaca taactctagt acgtaatcta tatataaaat tatttgaatc      1260
     agcatgacat ttagaacatt aattattata gtgtgtcttc agtttatgtg caggtagttc      1320
     acgagacaat gtttacaatt cgttggccca tatttcacgg tattttcact aaagagaaca      1380
     atcgcacttt ttagagaaag cgcttgtata cgtaaatatg tcgaaatatc gcaaaatgta      1440
     aattcctttt aattaacaac agtgtaagaa aacttttagg agtcaaggta aaaaagaaaa      1500
     aaaaattgtc tggaccggga agcgaaccac cgccgacgct tagcagctcc tcaaggagat      1560
     gcgtttatcc gctacgctac aagaagcacg tatacgaaag ctctctgttt tacattgcca      1620
     tcaatatcaa gggttactcg ccaatatggc atttattgac tgtaatttac aactaattgt      1680
     actaagaacg acatgatttt ggtacctctt aagtgtgccg taactttgaa atagcaacac      1740
     acgagttata aggagaaaag catgaaaata cgaaatggaa aatggcgtct ctgcaggaca      1800
     tagcttgcga ccgtagagac atctatcggt tggtacgggt aactggggtc cgacgcacta      1860
     ctgtccctag acgcttgt                                                    1878
//
ID   MuDR-N1_MyPe repbase;    DNA;    INV; 1858 BP.
XX
AC   .
XX
DT   10-SEP-2019 (Rel. 24.09, Created)
DT   10-SEP-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   MuDR-N1_MyPe.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-1858
RA   Bao W.;
RT   "DNA transposons from the green peach aphid genome.";
RL   Repbase Reports 19(9), 1637-1637 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus. TSDs are 8-bp long.
XX
SQ   Sequence 1858 BP; 742 A; 174 C; 184 G; 758 T; 0 other;
     acgaatggat cttcgcagga aaaaattttt tgtgtccgta tataatattg cctacattta        60
     gccccttttt tgcagtcatc aaaatgtgat aacattgata aaccgataac ataattttca       120
     ttataaatta taatattata ttttattata ttaattataa ttaaaatagt taaatgtagt       180
     taataagtta ttaaaaaaca caatatcgta attcaaaatt taaaaataca caattcattg       240
     agaatacagt ataaatgtac aacctattta cgtagaacat tattttaaat tttcaatctt       300
     tagctataaa agttaaatta tataataaaa ttttaaattt gataaatatt ttcaaaattc       360
     gaactatacc cagatagcaa ttgtgtaatg atattattat tattacagta cacaaatatt       420
     gttataaaaa taatgttatt aaaataacat aactattcaa ctaacataat attattttat       480
     agatattata ataaaattat tttttatgta tggtaataat aatattattt aacaaatata       540
     ataatcaagc tattataata aagaaagtat attattataa ttattatgaa tcttgaacat       600
     aatttaatac cctttgaata gaaatcagta tagatggtag tatagtatct atacttacaa       660
     acgaatcaaa acctatgcaa actgaagata taaatacaat taacataaaa aaaaatattg       720
     aaaaacaacc tcgtttcttt actaaaaata aaaaaaaata aacttgaatt tcatcaattg       780
     tcgtcgagtg aaggtaatat aataagaaaa tccttactaa ataatacaag tgttttaaat       840
     gttcattcat atgacgatca ttcttatagc gctaaaagaa aatgaattca ttaatatatt       900
     gttgaattgt atcttttaaa tgacgatcgt aagtgaataa agaatattgt gttttttttc       960
     gaattgtgta ttatgaaatt tattaactat taatgtattt aactatttta attataattt      1020
     ataatgtaaa aatattatgt tagttggata gttacgttat tataataaca ttatttttat      1080
     aacaatattt gtgtactgta ataataataa tatcgtatta agaaattaat tttcttttag      1140
     cgctataaga atgatcgtca tatgaatgaa catttaaaac acttgtatta tttagtaagg      1200
     attttcttat tatattacct tcactcgacg acaattgatg aaattcaagt ttattttttt      1260
     ttatttttag taaagaaacg aggttgtttt tcaatatttt tttttatgtt aattgtattt      1320
     atatcttcag tttgcatagg ttttgattcg tttgtaagta tagatactat actaccatct      1380
     atactgattt ctattcaaag ggtattaaat tatgttcaag attcataata attataataa      1440
     tatactttct ttattataat agcttgatta ttatatttgt taaataatat tattattacc      1500
     atacataaaa aataatttta ttataatatc tataaaataa tattatgtta gttgaatagt      1560
     tatgttattt taataacatt attttttaca tttatactgt attctcaatg aattgtgtat      1620
     ttttaaattt taaattacga tattgtgttt tttaataact tattaactac taatgtattt      1680
     aactatttta attataatta atataataaa atataatatt ataatttata atttataatg      1740
     aaaatgatgt tatcggttta tcaatgttat cacattttga aaaccgcaaa aaaggggcta      1800
     aatgtatgca atattatata cggacacaaa aaattttttc ctgcgaagat ccattcgt        1858
//
ID   MuDR-N1_PBa repbase;    DNA;    INV; 957 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   MuDR-type DNA transposon from the Pogonomyrmex barbatus genome,
DE   consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   MuDR-N1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-957
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 638-638 (2014).
XX
DR   [2] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 957 BP; 360 A; 141 C; 142 G; 313 T; 1 other;
     acctctgtga acctggcacc cgactttcgg aaaattaact tttttatatg gaaacagtta        60
     gtattttgtt tgtagttgtt tgtagtaaca ataatttcgt ttgtagttaa atcgattaaa       120
     agatatcaaa atttaaaaaa atgacttgca cccgacatta agatatttta aatccgcttg       180
     cgcagtcttt tttagaatcg tttgtagttg tttgtagtgc ttttcgtttc gtttgtagtc       240
     gaaccgttca aaagttataa caatttaaac aaatggccaa gagtgaactt tgtcattttt       300
     taagatagcg caaatctgct tatattgtct aggtaattat aatgtagtaa tttgtattag       360
     ccaagaaaaa ttgaaaagaa cgcagatttg tcatggaaaa gttgcctcaa taaaacttaa       420
     aaaattttgt agatgaacat aaaaaaattt gtttttattc taacgaaaat aaacttttgt       480
     tacatttctt agtaaaaatg taaatattat tattaacaac aaataaaatg aaccagattt       540
     gtcacaaaaa aattgttata acttttgaac agttcgacta caaacgaaac gaaaagcact       600
     acaaacaact acaaacgatt ctaaaaaaga ctgcgcaagc agatttgcgc tatcttaaaa       660
     aatgacaaag ttcactcttg gccatttgtt taaattgtta taacttttga acggttcgac       720
     tacaaacgaa acgaaaagca ctacaaacaa ctacaaacga ttctaaaaaa gactgcgcaa       780
     gcggatttaa aatatcttaa tgtcgggtgc aagtcatttt tttaaatttt gatatctttt       840
     aatsgattga actacaaacg aaattattgt tactacaaac aactacaaac aaaatactaa       900
     ctgtttccat ataaaaaagt taattttccg aaagtcgggt gccaggttca cagaggt          957
//
ID   MuDR-N2_PBa repbase;    DNA;    INV; 1415 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   10-MAR-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   DNA transposon from the Pogonomyrmex barbatus genome: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   MuDR-N2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1415
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 639-639 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. TSDs are 9-bp long.
XX
SQ   Sequence 1415 BP; 455 A; 252 C; 246 G; 462 T; 0 other;
     acctgtgaag atagcccccc aacattgaaa aacataaagt ttctatagct cattcgattg        60
     ctcatcgttt gcacatgtat gcacatttcg aattttcgtt tgcacacttc tagtaaaaaa       120
     gttattaaca aaacaaattt cggggggcca tcttcacact agccccccaa ctatgagtaa       180
     attaaataaa aaatagctca attgatagat attcgtttgc acattgccaa acaggtcgat       240
     ttttcgtttg cacacctcta gttaaaaagt tattaacaat taaagtttca gaagcgagcg       300
     acttcggcag atgagataga aacaagaatg ttgtgcttaa aatggtatca ttcgatagat       360
     ttttgtttgc actttcccga acagctcgaa ttttcgtttg cacacctcta gttaaaaagt       420
     tattaacaaa caaagtcttg gggagcggca gttctacata aaaaaattcg ttttcaggat       480
     gaattccgaa gatacgcgat tcaaaataga accaatcgat agatattcgt ttgcacattg       540
     ccaaacaggt cgatttttcg tttgcacacc tctagttaaa aagttattaa caattaaagt       600
     ttcagaaacg agcgagttcg atagatgagg tgaaaacaaa aatattgtgc ttaaaatgat       660
     atcaatcgaa aagttgtggc gttttcattc atattcggtt cttgtttatt tctcataaat       720
     ctattgcatg ttctcgctca tctttaatat ctgtacctaa acgttatatc ttgtaataac       780
     tgaaaagatt cacctcgaac tcgctcgttt ctgaaacttt aattgttaat aactttttaa       840
     ctagaggtgt gcaaacgaaa aatcgacctg tttggcaatg tgcaaacgaa tatctatcga       900
     ttggctattt tgaatcgcgt atcttcggaa ttcatcctga aaacgaattt ttttatgtag       960
     aactgccgct ccccaagact ttgtttgtta ataacttttt aactagaggt gtgcaaacga      1020
     aaattcgacc tgttcggaaa agtgcaaaca aaaatctatc gaataatacc attttaagca      1080
     caacattctt gtttctattt catctgccga agtcgctcgc ttctgaaact ttaattgtta      1140
     ataacttttt aactagaggt gtgcaaacga aaaatcgacc tgtttggcaa tgtgcaaacg      1200
     aatatctatc aattgagcta ttttttattt aatttactca tagttggggg gctagtgtga      1260
     agatggcccc ccgaaatttg ttttgttaat aactttttta ctagaagtgt gcaaacgaaa      1320
     attcgaaatg tgcatacatg tgcaaacgat gagcaatcga atgagctata gaaactttat      1380
     gtttttcaat gttggggggc tatcttcaca caggt                                 1415
//
ID   MuDR10x_AP  repbase;    DNA;    INV; 2129 BP.
XX
AC   Contig4024;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR10x_AP.
XX
NM   MuDR10x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2129
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1359-1359 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           821..1429
FT                 /product="MuDR10x_AP_1p"
FT                 /translation="MLGTMDIKTHTGEPFILSNDSDKNIIIFSCKTNIDFL
FT                 CKSETIYLDGTFDYCPKLFTQLFTLHGYFNNNYVPLVFALLPNKTKQTYKH
FT                 FLNILVLVCQNVGLILKPTTVICDFEESIHIALREVWNNVNIFGCRFHLTQ
FT                 SWYRKIQNLGLCKAYKNNKTPEGEWLNNIFGLIFLNPNEVGSCFVDDFMST
FT                 IPHDIKFQMFAD*"
XX
SQ   Sequence 2129 BP; 784 A; 316 C; 298 G; 731 T; 0 other;
     gtgtttgtaa tttgcaccaa aatagagggt atgtaatttg caccaccctc aggtagtaag        60
     aaataggaat tgtaatttgc accaaaatta aaatttaaga tagtatcatt agtatcgata       120
     gtattactcg atattctcgt tgacgcgacg tcaagactag atgaacacga atgacaataa       180
     taatttttcg ggatttttca ccttatctgg taatattttg acgttttacg tccaattgtc       240
     ggtcgtaatc gcgttatata tatatttata taatgtatat cagtttatta ttttgatcaa       300
     atatcaatta agctacacgt ttagtctttc cgtttcgtcg taatacgtaa tttaacgtaa       360
     catttttgta ttgcagtatt taattttttt cttgaaatat ggaagttaag ttaattaaaa       420
     gtaatcgcgg ggaagatatt ttagaatacg ataaccaaac tttttatttt gcatacaaaa       480
     caaaaactac aaatataatt cgttggcgtt gtacacagag aaaatgttca gcaaaattgt       540
     ttactacagg tgaaaatttg atgattgtcc gtgatgagag tgtacatgta aatcacgatg       600
     agaaaaactt aaacgttata aataaaatca attgtgcaaa ataaaagcac gagaatcacc       660
     atatgaaaaa ccagccaaaa ttttaagaaa tgtagtgcaa aattcaacag attccaatgt       720
     tatcactact aaggatattt cggatttaag acgtaatata tataatacga agaggaagat       780
     attgccaaca tttccagtat cacagaatga agtacattca atgcttggaa caatggatat       840
     caaaacacac acaggtgaac cgtttatatt atcaaacgat tctgataaaa atataattat       900
     attttcttgc aaaacaaaca ttgatttttt atgcaaaagt gaaacaatct atcttgatgg       960
     gacattcgat tattgtccga aattattcac tcaacttttt actttacatg gatattttaa      1020
     taataattac gttcctcttg tatttgcgct gttaccaaat aaaacaaaac aaacgtataa      1080
     acatttttta aatattttgg tacttgtatg tcaaaatgtt ggtctaatat taaaacctac      1140
     aacagttata tgcgattttg aagaatcaat tcatatcgca ttaagagaag tttggaataa      1200
     tgttaatatc tttggatgtc gttttcactt aactcagtct tggtacagga aaatacaaaa      1260
     cttaggacta tgtaaagcgt ataaaaataa taaaaccccc gaaggtgaat ggttgaataa      1320
     tatttttgga ttaatatttt taaatcctaa tgaagtgggc tcatgttttg ttgatgactt      1380
     tatgtcaaca ataccacacg atataaaatt tcaaatgttt gctgactgac ttgttgactg      1440
     acaattatgt agacaacaat tcattatttc caccgtatat ttgggcagtc gacacataca      1500
     agtatacaac gaatgcatgt gaatcctttc acagtaaatt taatgcagag ttttatcatc      1560
     cacacccaca agttttcaat ttcattaaag ttctaacaga ttttcaaaca gatacttata      1620
     taaaactatc aagttaacat ataactccgc gaataacttc tcaaacatgt caacggacga      1680
     aacaaattca agctgctttg gaccagtata ataataaatt gatttcaaga acttcattca      1740
     ttgcattagt tgcatacaaa tacaaaaaac gtataagtat taaaacagcg aagtataaca      1800
     gcaattaata ttatgtacct acataagttt atttttttcc aactataaat tattatttac      1860
     agattattcc accttcaatt aactacgaaa cataaaatga tatcaaaatg caacataggt      1920
     aaatttgatt ttttttttga atttaacaca taattatttt aactgacgaa ctttttttgt      1980
     atacatttgt ttctttttta aataaacata aacgtatact atcgaaaaaa taatcgattt      2040
     taattttggt gcaaattaca attcctattt cttactacct gagggtgatg caaattactt      2100
     acccttattt tggtgcaaat tacaaacgc                                        2129
//
ID   MuDR11x_AP  repbase;    DNA;    INV; 2220 BP.
XX
AC   Contig25811;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR11x_AP.
XX
NM   MuDR11x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2220
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1360-1360 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(944..1549,1553..1708)
FT                 /product="MuDR11x_AP_1p"
FT                 /translation="MSYNSAIDNTDTSTTNAEEFLLINDQETNIIIFSCET
FT                 NLIFLCESHTIFVDGTFEYFPKYFTQLFTIHGMKNNFYVPLVFCLLKNKNS
FT                 ETYTQAFKYIQNKCYEKNLTFDPKNVTDDFEISIHNAILSIWPSTNLIGCR
FT                 FHLRQAWYRKIQELGLSTEYKENGWLRTAFGLTFLDPQEVSESFVEDFMSI
FT                 IPEEFIINMLIILTIISLKKMCFLQQYGPILVQVYPEQQIIVNLSTHILMN
FT                 NFINHIQILIHF*"
XX
SQ   Sequence 2220 BP; 810 A; 340 C; 337 G; 733 T; 0 other;
     gggcgtcagt cgtttccgcc aaagaacccg atttttgttt ccgccaaaac gaaaaaggtt        60
     cgattttcat ttccgccaaa tctatttcta cctatattat tgagctggag tttgagaact       120
     tctggtctgt ctgtagtgct atcgaccatc gatgtaccta tgacgataaa ccatttaata       180
     tttaagatat cataaagaga taattgattt taaacgtaga aatacctaca taatattata       240
     aataaatata aatcgattta acctatatca cgtgtagata tatcaacagt gtctgtgtta       300
     tcgggatcgg agttctgtga tcggatctgt cagttctgtg gtaacaacga cgaaattagg       360
     agtattaacc aaatattaca acatttagcc gcgtccgagt gaagcgtgaa taatatacgt       420
     agattcattt ttgaatatat tggaatttta tattatggaa ttcataacaa gtaaacgtgg       480
     aaaaaaaatg actgtgattg atgagttcaa atttagtttt tcttacaaat cggtccaaac       540
     aaatatttca aggtatcgct gcttcgtaaa aacttgtacc gcaactattt atgttgatca       600
     gttaaatcag ttgatcagta taacaggtat gttaaaaaat gtgtttattt taaatttact       660
     ttttcttcga tattttaaaa ctaattagtt acgtattgat tacttgtact gtagaccaca       720
     tatgcaatgg gccatgttct aatatcgata ggcaaaaagt gacgactgct tgtaagcgaa       780
     aagcagtaaa tgatatcagt gaaagacctc aaaaaataat tttgaatgaa attcaatcga       840
     ataacagtgt ttcgaccttt acggtcaatt atgtatcagc tattcgtcaa tgtatatatc       900
     gagcacgaaa gcattcattt ccaatttaat ccttcgtcat taaatgagtt acaattctgc       960
     aatagataac actgacacat ctaccacaaa tgccgaagaa tttttgttaa ttaacgacca      1020
     agaaacaaat atcattatat tttcttgtga aacaaattta atttttctat gcgaatcaca      1080
     tacaattttt gtcgacggaa cgtttgaata ttttccaaaa tattttactc agttatttac      1140
     cattcacggc atgaagaaca atttttacgt acctcttgtt ttttgtttat tgaagaataa      1200
     aaactctgaa acttatacac aagcttttaa atatattcaa aataaatgtt atgaaaaaaa      1260
     tttgactttt gacccaaaaa atgtaacaga cgatttcgaa attagtattc ataatgctat      1320
     attatctatt tggccttcaa ctaatcttat tggctgccgt tttcatttaa gacaagcgtg      1380
     gtatcgtaaa attcaagagt taggacttag tacagaatat aaagaaaacg ggtggctaag      1440
     gactgcattt ggattaacat ttttagatcc tcaagaagtt tcagaatcat ttgtcgaaga      1500
     ttttatgtct ataataccag aagaatttat tataaatatg ctgattattt aactgacaat      1560
     tatatctctg aaaaaaatgt gtttcctcca acaatatggt ccaattttag tgcaagtata      1620
     tccagaacaa caaataattg tgaatctttc cacgcacatt ttaatgaaca attttataaa      1680
     tcacatccaa atattaatac atttttaaaa attttaatct cgaatgttca aaacaacgta      1740
     tacattcaaa ttaacagttg caacgtaggt atgcaaaaac ctgtaagatg taatataaaa      1800
     aagcgattga taagtacaac aaacgcaata gacgaataca aaaataaaac aatttcaaga      1860
     atgacatttt taaaaaaggt atgcaataat tattctaaat aataattaac aattaattat      1920
     agaagtataa aactgtcaga aataattgat ttactatata tatacatata atataacaca      1980
     aattgactta acctaattca aattcaaata ttttaacttc aattaaaaaa tgaagtcaaa      2040
     caattttttg ggggtcaatg agaaccgcct cctcgtggtg gcccctgggt aactctaaat      2100
     ggtcctcaaa ctatagttta gaccggtagg tagaaataga tttggcggaa atgaaaatcg      2160
     aacctttttc gttttggcgg aaacgaaaat cgagtttttt ggcggaaacg atgatcgccc      2220
//
ID   MuDR12x_AP  repbase;    DNA;    INV; 1397 BP.
XX
AC   .
XX
DT   30-JUL-2009 (Rel. 14.07, Created)
DT   30-JUL-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR12x_AP.
XX
NM   MuDR12x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1397
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1361-1361 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(164..208,302..931)
FT                 /product="MuDR12x_AP_1p"
FT                 /translation="MYVYHLINYVMLRLAXGKRLTVLDNFKFKFKYESKIS
FT                 GNKTWECANKTCKAKLVFNKEKTLIQEKSVLDHSHYIFGLPFLEPDEVEDS
FT                 FVFDLIADMPSNNQIVQFCDYLTETYMQDIFPPSLWASKSEVITNNVCESF
FT                 HSKFNAYFYHHHPSLYKFIDALQDIQVDTYIKIRSAEEGVIQKRNKATTQK
FT                 YKFINERRQMKEDGRISRYEFLKKVCFKNKRQNVN"
XX
SQ   Sequence 1397 BP; 519 A; 185 C; 197 G; 493 T; 3 other;
     cctttttcta aaagttgata tgtaaactgc ggcaaaaaaa aatttacatt atacaatctg        60
     cgacaaaacc gataagatac attatacaaa ctgcggcaat ttattttata taccttctat       120
     atacctatac tatattatag tagtacctaa atcacgtacc aatatgtacg tatatcattt       180
     aattaattat gtgatgttgc gtcttgcgta gaaattggta aggtaaatcc aaatgtattt       240
     ttaagtttta acgaagcata tcggtaatat cggttccttt acttttgata atactagtta       300
     gnatggcaaa cgattaacag tgttagacaa ttttaaattc aaatttaaat atgaatcaaa       360
     aataagtggt aataaaacgt gggaatgcgc taataagaca tgcaaggcca aattggtctt       420
     caacaaggaa aaaactctaa tacaagaaaa atcagttttg gatcatagtc attatatttt       480
     tggtcttccg ttccttgaac ctgatgaagt cgaagattcg tttgtttttg atttaattgc       540
     agatatgcca tctaataatc aaatagtaca attttgcgat tatttaacag aaacttatat       600
     gcaagacata ttccctcctt cnttgtgggc atcgaaatca gaagttataa caaataatgt       660
     atgtgaatct ttccattcaa aatttaacgc atatttttat catcatcatc catcactata       720
     taaatttata gatgctctac aggatattca agttgacaca tatataaaaa ttagaagcgc       780
     agaagaaggg gtaatacaaa aaagaaataa agcgacaaca caaaaataca aatttattaa       840
     cgaacggcgg caaatgaaag aagatgggcg aatttcaaga tatgaatttt tgaaaaaagt       900
     atgttttaag aataaacgac aaaatgttaa ttaggtacct acttattata ttattttatt       960
     ttaaaaattt ttttttgatt ttacgatcac tatacgatct tttaaaataa tttttaataa      1020
     taataatatt tttcaatttt aaaattggtt ttttctttat ttttacgcct aatactctaa      1080
     gagtctctta gagacttcta ttgagtataa tattataggt aatattcatg ttaaaaatac      1140
     atttgtattt acctaaccaa tttctacgca agacgcaaca tcacataatt aattaaatga      1200
     tatacgtaca tattggtaca cataggtagg tatacgtgat ttaggtacta taatatagtt      1260
     anatgttata tcgtatatat agaaggtata taaaataaat tgccgcagtt tgtataatgt      1320
     atcttatcgg ttttgtcgca gattgtataa tgtaaatttt ttttgccgca gtttacatat      1380
     caacttttag aaaaagg                                                     1397
//
ID   MuDR1x_AP   repbase;    DNA;    INV; 2394 BP.
XX
AC   .
XX
DT   24-JUN-2009 (Rel. 14.07, Created)
DT   24-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR1x_AP.
XX
NM   MuDR1x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2394
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1350-1350 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(434..520,749..1345,1349..1843)
FT                 /product="MuDR1x_AP_1p"
FT                 /translation="MAISIFWRIHLLKMLNGGVVQIKYVQQKYSRTTIARQ
FT                 NVSTQCKRVAVEDISIRPRKIILTEMNNHITNTDFTISDVSAIRKSIYHAR
FT                 KKSLPSNPKSVSDVHKALNDLHLTTSKNEDFLFINDELSNIIIFTCHENLK
FT                 FLCKSVYYIDGTFSYCPKYFVQFFVIHGFINEYYVPLVFCILNNKSTETYQ
FT                 LVLSYIKNKAMQNFSLMFKPKYVTVDFELAIHLAVKSVPLTEIIGCRFHLT
FT                 QAWYRKIQSLGLTSAYKDNKWLKFTFGLTFLDPNEVSDCLVDDFMSEIPDD
FT                 PKYRKYADYLVDNYIGENANFPPNIWAAFAADLTRTTNNCESFHSHFNGQF
FT                 YKSHPNIFTFLEILIKTVQTDVYIKINSCVKNIPNPRKNAQVITRLKKL*"
XX
SQ   Sequence 2394 BP; 887 A; 312 C; 322 G; 872 T; 1 other;
     gggtgcagcc catttgcgcc aaaataaaaa aggtatgttt ttccgacagc ccatttgcgc        60
     caaatttacc tgcgtaaaca ttttaaatta acgacttggt taattcttat atttcaaaga       120
     cgtcgtgtct gtaacgtatg ttaaagttat ttttataagt ctatagattt taaagctttg       180
     tatattattg cgtcgaaaga taagcaaaca agttttatat cagttttatt atgttgtatg       240
     atgtaggtac tccgttaccg gatatatagg tatcgttatt cgtcaaaaga acgatcgcag       300
     tgtgatttca tcagacattc gttacgttac actaaataat attttcgaat ttattaatga       360
     taattatttg aattataaat tataagaatg gagttcacga caagcacaag agggaagaaa       420
     atggttgttg aaaatggcca taagtatatt ttggcgtata catcttctaa aaatgttgaa       480
     cggtggcgtt gttcaaataa aatatgtcca gcaaaaatat taattcaaga tggaaaaatt       540
     atcaaaaagc atggtacgtt gcaaacaata atttttattt taataaaatg tgttaaatgt       600
     atataatata taaaacaaat taactgtttt cgcaataaat ataattaatt ttttttttcg       660
     ttactctgat aataataaca aaattcactt aaattatacg ttatcaaatc ataaatgatt       720
     ttaattttaa ttttatagat tcgcataatc acgtacaaca attgcaagac aaaatgtaag       780
     tacacaatgt aagcgtgtgg ctgtcgaaga cataagtatt cgtcctagga aaattatttt       840
     aactgaaatg aataaccaca taactaatac agatttcact atatctgatg tatccgctat       900
     acgaaaaagt atttaccatg ctcgtaaaaa atctcttcct tcaaatccta aatctgtgtc       960
     tgatgtgcat aaagcattaa acgatctaca tttaactact tctaaaaacg aagatttttt      1020
     atttattaat gacgaattat ctaatataat tatatttaca tgtcacgaaa atttaaaatt      1080
     tttatgtaag tcagtatatt atattgacgg gactttttcg tactgtccaa aatattttgt      1140
     tcaatttttt gtcattcatg gatttatcaa cgaatattat gtaccattag tattttgtat      1200
     tttaaataat aaatcgacag agacgtatca acttgtttta tcatatatca aaaataaagc      1260
     catgcaaaat tttagtttaa tgtttaaacc aaaatatgtt actgttgatt ttgaattagc      1320
     tatacatctc gctgtgaaat cagtatagcc attaaccgaa attataggct gtcgttttca      1380
     cttgactcaa gcttggtaca ggaaaattca atcactaggg ttaacttcag cttataagga      1440
     taacaagtgg ttaaaattta catttggttt aacttttctc gatccaaatg aagtttccga      1500
     ttgtttggtt gacgatttta tgtctgaaat ccctgatgat ccaaaatacc gaaaatatgc      1560
     agattattta gtagataact acatcggaga aaatgccaat ttccctccaa acatttgggc      1620
     agcgtttgca gctgatttaa ctagaaccac caataactgt gaatcttttc actctcactt      1680
     caatggacag ttttataaat cgcatcctaa tatttttaca tttttagaaa ttttaattaa      1740
     aacagttcaa acagatgttt atattaaaat caacagttgt gttaaaaata tacctaaccc      1800
     tcgaaaaaat gcacaagtta taaccagatt aaaaaaactt taaaagcaat tgagaattat      1860
     aaaaacaaaa aattaacgcg ttatgaatat gtacaaatag ttgcatttaa ttacaataat      1920
     gatcaatttg attgatattt taaaaaaaat tgtgctattg actatcatac ctatagccta      1980
     taattttcaa taaaatgtca aatgtgtacc tatactaatt atttactatt gtttaaaaag      2040
     tgtattattg ataattatta ttaaaaaaat cgtattattg atttgttata aattataata      2100
     gttagtaata agtatatttt gtaatttgta tagtttttaa aaacaatttg tattaattat      2160
     gattattgtt tcaaaaaaaa aaaaatgtgt atatacagct attattgatt attattttaa      2220
     aaacattcgt ataattaact atgatttaaa taaaattgta ttaattatta tttaattgat      2280
     tattatttga gaaaaaaata tattacttta ttataattat accaggtaaa tttggcgcaa      2340
     atgggctgtc ggmaaaacat acctttttta ttttggcgca aatgggtaac accc            2394
//
ID   MuDR2x_AP   repbase;    DNA;    INV; 1903 BP.
XX
AC   Contig14546;
XX
DT   25-JUN-2009 (Rel. 14.07, Created)
DT   25-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR2x_AP.
XX
NM   MuDR2x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1903
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1351-1351 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1220
FT                 /product="MuDR2x_AP_1p"
FT                 /translation="MWFMDRTFKCSSIFAQLYIIRAEFEGNVRTCVYAFLP
FT                 DKLENTYHEMLLNLVIASVRNATPLKPERIIIDFELGVINVINRVFNDVQI
FT                 QGCFFHLCQSVWRQIQQLGLAKLYKENERISKECRVMTSLAFLPIDDILVE
FT                 ISHMYTTFSQELLPLISYFDRTYISGNNNNARYPPSIWNVRRQTMSNSHRT
FT                 NNFSEGWNSSFNKLVGTTNPSFWTVLRAIQLDECGNRLHKRQKSYTAGNNK
FT                 LLHLCNKHQKKEITNMEFLNSIYYTCSF*"
XX
SQ   Sequence 1903 BP; 651 A; 249 C; 272 G; 731 T; 0 other;
     ggtcactttg tacggtccat tgtttaaaat gcataacgcg gacactttgt actgtcgggt        60
     aaaaaggtag attacagaac gcggacactt tgtacggtcg ggtaaaaagg tacattgcag       120
     aacgcggaca ctttgtacta ttatatacat aaagtatata tattataaat ataagttata       180
     tacctaagtt agcaagtaaa taatactata tattatatat gacaaatttt actaaaaatg       240
     ttataaatac attttatata atctggataa tctcatgggt acatatacat cgataatagt       300
     ttatcattat atatatttca actgattttt taatttatga caatggaaat gagcatagaa       360
     ttttaatttt cgctacaaat ggaggtcttt cttttttatc ttcatcaaat atgtggttta       420
     tggataggac atttaaatgt tccagtatat ttgctcaatt atacattata cgagcagaat       480
     ttgaaggaaa tgttaggacg tgtgtttatg cttttcttcc agataaatta gaaaatacgt       540
     atcatgaaat gttgttaaat ctcgttatag catctgtacg aaacgcaact ccccttaagc       600
     ctgagcgaat tattatagat tttgagttag gtgtaataaa cgtaataaat cgagttttta       660
     atgacgtcca gattcaaggt tgcttttttc atttatgcca gtctgtatgg cgacaaattc       720
     agcaacttgg attagcaaaa ttgtataaag aaaatgaacg gatttccaaa gaatgtagag       780
     tgatgacttc attggcgttt ttacctattg acgacatttt ggtcgaaatt agtcatatgt       840
     atacaacatt ttctcaagaa ttactacctc ttatttcata ctttgataga acgtatatta       900
     gtggtaataa caataatgca cggtaccctc cttctatttg gaatgtaagg cgtcaaacta       960
     tgtctaattc tcatcgaact aataatttta gtgaagggtg gaatagttcg ttcaataaat      1020
     tagtaggaac aacaaatcca agtttttgga cggttttgcg agcaatacaa ttggatgaat      1080
     gtggcaatag acttcataag agacaaaaat cctatactgc tggcaataat aaactattac      1140
     atttatgtaa caaacatcaa aaaaaggaaa taacaaatat ggaattttta aattccatat      1200
     attatacatg tagtttttaa agaatttttt aaatattaaa gaatggaaat tttaaatttt      1260
     atagatcgtt cattttgacg aattattcta aaattgattt attaaaccct taatattaaa      1320
     taattatgta tgtgcacttt ttatctaagc ttgataccat tttgacatat tttcatatta      1380
     ttatactata caatattatg tagtttttta aaatttttgt caatattata ctttacttgt      1440
     cattttgaga tatttccata ttataggtac tatgcatgta gtttttaatg atttttttca      1500
     ttattatatt ttatttgtta ttatgacata tttatattgt acacattttt aatttgcttt      1560
     aaaactgata tctaatatta taatacaatt aagatttata ataatattat tgattgtttg      1620
     attattttga tcattattaa tatacgatga aacaatttac ttttaatttt taatttttac      1680
     attataattt ataatattat ataatatact tactacttag gtatataact tatatttata      1740
     atatatatac tttatgtata taatagtaca aagtgtccgc gttctgtaat gtaccttttt      1800
     acccgaccgt acaaagtgtc cgcgttctgc aatgtacctt tttactcgac cgtacaaagt      1860
     gtccgcgttt cgcactttta atgctcgacc gtacaaagtg acc                        1903
//
ID   MuDR3x_AP   repbase;    DNA;    INV; 2411 BP.
XX
AC   Contig17480;
XX
DT   25-JUN-2009 (Rel. 14.07, Created)
DT   25-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR3x_AP.
XX
NM   MuDR3x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2411
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1352-1352 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(494..1126,1130..1462,1523..1951)
FT                 /product="MuDR3x_AP_1p"
FT                 /translation="MDKIQILKTDRGGLKIVFKDYMYTKQKNLANNKIRWE
FT                 CVEKKKKNCKGSVTTDQMIFNVLKNIEHKNHPPSPAQIEVAKVMLNMKTKA
FT                 QDNFDTPSRFFATETSNLSNEAMVLLTEEKSVKTSLRRIRNKKYPSLCPLS
FT                 ELKINGIWATTGGPEPKPLLLFDNENNTNRIIVFASPEGMSALSKSVKWCM
FT                 DGTFFTCPKEFYQVYIIHACINTYIPCVYALLQRKTKEIYIELLSTLRSML
FT                 SELKLKTISIDFEQSMIQAIELVFVDINIQCFYYHLSQCIWRKVQNIGLAT
FT                 KYKENQNVRQIVGMLKGLALLPLKYVKKGMMFCYIYWLGMSVLYDLSNDLN
FT                 DPDIDVLLFYFDRTYVNGTYKRTTTKSNGLSLWWSSPIFPPYLWNVHNAKK
FT                 KNTGRTNNISEGFDNKFKSLIRTQHPTIWMFIEALQRSDSLANIKLLNIQT
FT                 GTVFTKKKNKYQKRIKICV*"
XX
SQ   Sequence 2411 BP; 911 A; 293 C; 331 G; 876 T; 0 other;
     ggacatttcc ccccgataaa ttgttggatg cggacaattt ccccccgttt tttttttgtt        60
     ttttttattt ttaattattt accttcgaat atataattat tatttttaac acatattttt       120
     tagcttttgt tcatatttat ttattttttt tttttgtaaa aactatgcgt taactaaaaa       180
     gtctttaatc ttaatttcaa taaaaaataa caaataatat ttaaaacaag ttaagtaaaa       240
     atatagttaa agtaaaatag tagtatacta atattgaata gatgggtaac atcgaaatct       300
     aaaataaatt gtgtccaaaa cccagtcaat tactaagact attaagataa cattcttata       360
     caatcttaca tcgtcatgaa cattgagtca atattttata tcaaaactgt tcaaagcagt       420
     ttagtagtgg tttagtggtt aaagtggttg tatacgttta aaataaaagt tttaaatttt       480
     gttttttgtg gacatggata aaatacaaat tcttaaaaca gacagaggag gtttaaaaat       540
     tgtttttaaa gactatatgt atacaaaaca aaaaaatctt gccaataaca aaattagatg       600
     ggagtgtgtg gaaaaaaaaa agaaaaattg taaaggtagt gtaacaaccg atcaaatgat       660
     ttttaatgta ttgaaaaata ttgaacacaa gaaccatcca ccgtctccag cgcaaataga       720
     agtagcaaaa gtcatgttga atatgaaaac taaagcccaa gacaattttg atactccttc       780
     cagatttttc gcgacagaaa cgtctaattt atcaaacgaa gcaatggttt tattaacaga       840
     agaaaaatcg gtcaaaacat cactaagaag aattcgtaat aaaaagtatc cttctctatg       900
     ccctttatcg gaattaaaaa taaatggtat ttgggctact acgggagggc ctgaaccaaa       960
     accgctttta ttatttgata atgaaaataa taccaatcga ataattgttt ttgcgtctcc      1020
     cgaaggaatg tctgcgttgt caaaatctgt caaatggtgt atggatggta cattttttac      1080
     ttgtcctaaa gaattttatc aagtatacat aattcatgca tgtatttaaa acacatacat      1140
     tccatgtgtt tatgccttat tacaaagaaa aactaaagaa atctacattg aacttttatc      1200
     aacacttaga agtatgttgt ctgagttgaa attaaaaact ataagtattg actttgaaca      1260
     atccatgatt caagctattg aattagtatt tgttgacatt aatattcaat gtttttatta      1320
     tcatctttct caatgtattt ggcgtaaagt tcaaaacata ggattagcta caaaatataa      1380
     ggaaaatcaa aatgttcgtc aaatagttgg catgttgaaa ggtttagctc tattgcctct      1440
     gaaatatgtt aagaaaggta tgtgatatta tatattatgt taataatatt attaccatta      1500
     cttctattat aatttataat aaatgttttg ttatatttat tggttaggta tgtctgtgct      1560
     gtatgattta tcaaatgacc tcaatgatcc agatatcgat gtactattgt tttactttga      1620
     tagaacatac gtcaatggaa cgtacaaaag aactactaca aaatcaaatg gtttgtcatt      1680
     atggtggtct tcaccgatat ttccacctta tttatggaat gtacataatg ctaaaaagaa      1740
     aaatacaggt agaacaaata atattagtga aggtttcgat aataaattta aaagtttgat      1800
     aagaactcag catccaacta tttggatgtt cattgaagct ctccagagat cagattcatt      1860
     agcaaatatt aaattattaa atattcaaac aggtacagtt tttacaaaaa aaaaaaataa      1920
     atatcaaaaa agaataaaaa tatgtgttta ggaataaaaa ataaatcaca aataaagatt      1980
     tttttacaaa ctgtttcatt tttatgccga cattttttct attagttatt cttttttatt      2040
     tttatgtcaa aatttttagt attaataatt cattatattt tgtttataca atcttttttt      2100
     atttttacgt cggatttttt ggccagctgt attgtactat attatattat ttaggcaata      2160
     tcttacttaa cttgttttaa atattattta ttattttttt attgaaatta agattaaaga      2220
     ctttttagtt aacgtacagt ttttacaaaa ataaaaaaat aaatatgaac aaaagctata      2280
     tgtgtgtccc tatattaaaa taattttaat tttaaattat aattttatag tcgaaggtaa      2340
     ataattaaaa ataaaaaaaa aaacgggggg aaattgtctg catccaaaaa tttatcaggg      2400
     gggaaatgtc c                                                           2411
//
ID   MuDR4x_AP   repbase;    DNA;    INV; 2343 BP.
XX
AC   Contig42151;
XX
DT   25-JUN-2009 (Rel. 14.07, Created)
DT   25-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR4x_AP.
XX
NM   MuDR4x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2343
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1353-1353 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(543..1448,1472..2002)
FT                 /product="MuDR4x_AP_1p"
FT                 /translation="MNFTIVSSERKNDLILYNDYKYYKKDYVKYLDAFKWQ
FT                 CVKKKCTAKMYVNKATNKKLKDESIHNINHKEETTSILKKSFSNGLKRKSE
FT                 DELERPSKIINRGILKNPEVTQTFTSTDINNIYQCLYRSRRSSYPKLPTNL
FT                 NEVIDVMSERQIKTVQDENFVLVVNSDNKIICFSTKSNLKLLCSVDKIFVD
FT                 GTFTYCAKYFLQLFTIHIFKNGHYVPLVYFLLPDKCKDTYARSFGYVIEKF
FT                 SEINLSFSPSKIVSDFEEAIHIGAKTIWPEIQIVGCRFHLTQNWWKHIQNL
FT                 GKYKFEYSYKFIYFLGLSKEYKDESSEIGNWLKLVFGLPLLNSEEVSDCFA
FT                 TDLMSIAPDDERVGKFCDYLVEYYIDEGAKFNPHIWASREITSERTTNSCE
FT                 SYHSKFNSQFTKAHPNIFIFTHVLNTKIQTDTYMLINGININTISKNSAFN
FT                 KKKQNIKNLSNDLNDNKISKFTYLKHVSKYYQK*"
XX
SQ   Sequence 2343 BP; 912 A; 301 C; 294 G; 836 T; 0 other;
     gtctaaattg tataaaatgt taataataat tgtataattc aaaacttaaa tgtatatatt        60
     ctgattaata tgtgtatgtg aatatattat aaaatattaa aatgtatagt ctaaattgta       120
     taaaatgtat aaaatgataa taattgtagg tattataata aaatgtatag tctacaatta       180
     tacgcggtgt atgtgaatat tttataaaac gtatacctac ctagtctaaa ttgtattagt       240
     gtacgtattg ctataatata ttaggtacgc tacatataaa atgtcaatta tatgattctg       300
     cctgaaatct tatctttaag atacgatata tcttgatatc tatatgacct atatttatat       360
     gatattttat atagttaaaa tgtggacttc ccaatcttcc catgttactt ctcgcctagt       420
     tactaatcag tatcgatcca gttcgtggat tctcatcgat tctccatcgc gtgcatagag       480
     tcgcacattc gtattattat atttcttaca gctttattac ttattagtta taattaatta       540
     aaatgaactt tactatagtt tctagtgaaa gaaaaaatga tttgatttta tataatgatt       600
     ataaatatta taaaaaagac tatgtcaagt atttagatgc ctttaaatgg cagtgtgtaa       660
     aaaaaaagtg tactgcaaaa atgtatgtga ataaagcaac aaataaaaaa ttgaaagatg       720
     aaagtattca taatatcaac cataaagaag aaactacaag tattttaaaa aaatcatttt       780
     caaatggact taagcggaaa tcggaagacg aattggaaag gccatcaaaa attattaata       840
     gaggcatttt aaagaatcca gaagtgacac aaacttttac aagtacagat attaataata       900
     tttatcaatg tttataccgt tcgcgtagat cgtcatatcc taaactccca acaaatctta       960
     atgaagtaat cgatgtaatg agcgagcgtc aaattaaaac cgtccaagat gaaaactttg      1020
     ttcttgttgt taattcagat aacaaaatta tttgtttttc aacaaaatct aacttaaaac      1080
     tattatgttc agtagacaaa atatttgtgg atggaacttt tacatactgt gcaaaatatt      1140
     ttctccagct ttttaccatc cacattttta agaacggaca ttatgttcca cttgtgtatt      1200
     ttttactacc cgataaatgt aaagacacat atgcacgatc atttggttat gttattgaaa      1260
     aattttcaga aataaattta tcgttcagtc catcgaaaat agtatccgat ttcgaagaag      1320
     caatacatat tggagcaaaa acaatttggc cagaaataca aattgttgga tgccgatttc      1380
     atttgacgca aaattggtgg aaacacattc aaaatcttgg taaatataaa tttgaatact      1440
     catacaaata aaaattaatg aattgtatta atttatttat tttttaggtt tatcaaaaga      1500
     atataaagat gaatcaagtg aaataggtaa ttggctaaaa ttggtattcg gcttaccatt      1560
     gttaaattcg gaagaagtaa gcgattgttt tgcgacagat ttgatgtcaa ttgctccaga      1620
     tgatgaaagg gtaggaaagt tctgcgatta tttggtggaa tattatattg atgaaggagc      1680
     aaaattcaat ccacacattt gggcatcaag ggaaattaca tcagaacgta ctactaatag      1740
     ctgtgagtct taccactcaa aatttaattc acaattcaca aaagctcatc ccaacatttt      1800
     catatttacc catgttttaa atacaaaaat acaaactgac acttacatgc ttataaatgg      1860
     aataaatatc aatacaatca gtaaaaatag tgcttttaac aaaaaaaaac aaaatattaa      1920
     aaatttatca aatgatttga acgataataa aatttccaag ttcacttatt taaaacatgt      1980
     gtccaaatat taccaaaagt agttacctat atttatatta atacatttaa gttttgaatt      2040
     atgcaattat taacatttat cattttatac aattattatt aacattttat acaatttaga      2100
     ctatacattt tactatttta taatatattc acatacacat attaatcaga atatatacat      2160
     ttaagttttg aattatgcaa ttattaacat ttatcatttt atgcaattat tattaacatt      2220
     ttatacaatt tagactatac attttaatat tttataatat attcacatac acatattaat      2280
     cagaatatat acatttaagt tttgaattat acaattatta ttaacatttt atacaattta      2340
     gac                                                                    2343
//
ID   MuDR5x_AP   repbase;    DNA;    INV; 2680 BP.
XX
AC   Contig271;
XX
DT   25-JUN-2009 (Rel. 14.07, Created)
DT   25-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR5x_AP.
XX
NM   MuDR5x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2680
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1354-1354 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(368..532,818..1579)
FT                 /product="MuDR5x_AP_1p"
FT                 /translation="MINDFIDVTTVSIRQCVSIDTQLNLVPVSLKYNGFRF
FT                 KNASTIYCKSKRQQVIIAISSFLIFTLILGDIIKESVHYSHAPDIAKVKIK
FT                 EIITNIKEEAKTSVLTPRNLLSRAVETLPTSIIGQLPNIEKISKTIRRERI
FT                 KQQKPPANPVNVGDLIIPGEYSVTNKGDMFLFYDNKIQKRILIFSTLENLN
FT                 MLKECSSWFGDGTFRSVPTFFSQLYTIHGTKNKQSFPLVYILMVDRSKDSY
FT                 IEVLKALKSAVSSLTPQRIMDDFEMAFISACKDEFPTTEIKGCFFHFEQCL
FT                 WRKIQSCGLQQMYLWL*"
XX
SQ   Sequence 2680 BP; 1000 A; 382 C; 355 G; 943 T; 0 other;
     caaaatatct ccgatacaaa atatctctag tcaaatatat ctccgattta aaatatctcc        60
     agttcaaaat atcttctatt taaaatatct ccagtacaaa atatctcctc ttaaaaatat       120
     ctttaatgga aatatctctc atgaaaatat tttataataa tttttttttt tacaacgaca       180
     attattaaaa gtagataaaa aactgatgtc taaagtgatt accgaagtaa gtacattttc       240
     tagtaatacc taatgtttaa aaaataatcc gaaaggcaaa aataactcat cacaatatta       300
     cactgtcacg ctgagcaatt tgtattatct gatatatttt tcacgattac gagtgcgatt       360
     acaaaccatg ataaacgatt ttatcgacgt aacgactgta tcgatacgac agtgtgtcag       420
     tatagacaca cagcttaacc tagttccagt ttcactaaaa tacaacggat ttagatttaa       480
     aaatgcctct acaatttatt gtaagtcaaa aaggcaacaa gttattattg cataatggat       540
     accttcatac gttctataaa gaaggtgtga acaaattcat ttggcgttgt tctgagtaca       600
     aaacatataa atgtacttca tgctatacaa ccactcgaga agaaataggt aattattata       660
     ttactaatta ttaaggactg gatttaattg tatcatttac caaaaattaa ccatagaatc       720
     tacacattac aaaacgttga catttataat aaattttaaa ttttataacg tcttaacata       780
     atgtacaact caatataaat taatacaact taactaaatt agctcttttt taatttttac       840
     tttaatttta ggggatataa taaaagaatc tgttcattac tcacacgcac cagatattgc       900
     taaagtaaaa attaaagaaa ttattacaaa tataaaagaa gaagcaaaaa catctgtatt       960
     aactcccaga aatttattaa gtcgtgcagt tgaaactctc ccgacatcaa taattggtca      1020
     attaccgaac atagaaaaaa tatctaaaac aattcgacga gaaaggatta aacaacaaaa      1080
     acctccagct aatccagtaa atgttggtga cttaataatt cctggtgaat attctgtaac      1140
     aaacaaaggt gacatgtttt tattttatga taataaaatt caaaagcgta tattaatatt      1200
     ttccacttta gaaaatttaa atatgttaaa agaatgctcg agttggtttg gtgatggcac      1260
     atttcgttca gtgccaacat ttttttcaca actttacact atacatggta caaaaaataa      1320
     acaaagtttt cctctggtat acatattaat ggtagatcgt tctaaagatt catatattga      1380
     agttctgaaa gcgttaaaat ctgcagtttc cagtttaacg ccccaacgaa taatggatga      1440
     ttttgaaatg gccttcatat cagcttgtaa agatgaattt cctacaacag aaattaaagg      1500
     ttgttttttc catttcgaac aatgtttatg gcggaaaatt caaagttgtg gtttacaaca      1560
     aatgtattta tggttatgac gtagaatttt ctatgcaaat acgatcgttg agtgctttgg      1620
     cgtttattcc aacaattaat gttattcgaa ctttcgaaga acttatagat tcaacttatt      1680
     ttttggaaaa tgaagaacta ttatctccaa taatcaatta ttttgaagat acatggatag      1740
     ggcgaccaaa tcgtaacaac cggagacgct cgccccagtt tgatttttga atgtggaact      1800
     gttacgattc agtacttaaa catcaaccac ggaccaataa cgctgttgaa ggttggcatc      1860
     atgcgtttaa cagtgcactt gcagcaaatc atgttacgat ttggaaattc ataaattttc      1920
     ttaaacaaga acagtcatta caagaagtat tttatataat atttatgtat ttaataatat      1980
     attattaaat caccttatgt ttaggtcaac atggaacaat ctttgtcggg tgaaccaagt      2040
     ccgaaaaaaa gaaaaaagta caatgattat gatgaacgac tgtttaaaat cgtaagtcaa      2100
     tacaacgaga ttacaccaat gaattattta aggggaattg cccacaatct taaattttaa      2160
     cttatatctt gatcggattt tatatttatt tatttaactt tttaaatttt tattaataca      2220
     ttaattacct ggtactcaat ttatttaaat ttttttaatt gtattacatc actcaatcgt      2280
     ctacaacctt aaattataat ttgatatata ttttttgtga taattttgtt ttaaaaatac      2340
     agtcgattat attacaatga aaaatttttt tgtacttgta ataaataata attacataat      2400
     attatgatta caataacata tttttaaata ctaatgtact tactttggta atcattccag      2460
     ccatcagttt tttatctact tttaataatt gtcgtgttaa aaaaattaat attaatataa      2520
     aatataaata ttaaaatatt ttcatgagag ttatttccat taaagatatt tttaacagga      2580
     gatattttgt actggagata ttttaaatag aagatatttt gtatcggaga tattttgtcg      2640
     gagatatttt gaccggagat atttttgcgg agatattttg                            2680
//
ID   MuDR6x_AP   repbase;    DNA;    INV; 2386 BP.
XX
AC   Contig9458;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR6x_AP.
XX
NM   MuDR6x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2386
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1355-1355 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1166..1462,1440..1877,1881..2039)
FT                 /product="MuDR6x_AP_1p"
FT                 /translation="MLKETDDLFGDRTFKSVPSIFSQLYTIYCYARSLVIP
FT                 LVYILMTSRTKETYVEVLRQLLILQPDLNPKSIKIDFEQPFISVFKQIFPN
FT                 AHVSGCFFHFGVDVFFILASVYGVNYNLFGLQKKYAEDSTFALQVKQLCAL
FT                 AFVPVLDVVESFNTILESQYFIDNEQLFEPLVDYFEETWIGRTVRNRKRKP
FT                 LFQIEMWNCYNNVINDHPRTNNIVEGWHHAFNASLGCHHATIWKFISFLKQ
FT                 EQGLEAKIEKIILGENNPIKKRKYKNIDQCLKNTVENYETTNINTYLKGIA
FT                 HNFNF*"
XX
SQ   Sequence 2386 BP; 896 A; 340 C; 341 G; 809 T; 0 other;
     gtcatttggt ccggtaaata atatccggcg acaattgatc cgcgacattt gatacggttc        60
     aaaaagaacc ggtaccaaaa atatccggct aaaaaacgtc cggtaaaaga ataatataaa       120
     atacaaatat atataaatta gaactattat tttagaaaaa taatctatga tattgtagta       180
     tattatagaa tgtaataagc gaatagtata ttaccttatg gcttatatac agaaaaggat       240
     cggaaaaacc ttgaataaag aatgtaatca ggtctcaacg atagaaatta ttattataac       300
     ggaaatagcg taatatcaga ctacacgata ctgtacgata ctatttatat atatgtattg       360
     tataccgtac actatacgat acatataagt tttttcgatt ttagtacagg tgtacaccta       420
     gccgtatgtg gacatgttta agtaacgtta atactaaaga atgccactta cattcatcaa       480
     aagctaaaag gcataaatat gcttttaaat aaaagttttt tatatagtat tcattatgtg       540
     tacgaaacaa aagttgtttg acgttgtatc gaatataaaa agttgtcatg taaaagccga       600
     tgtcacataa caacgaaaga ggaaacgggt atgtacatca aaatctgtat accaaattaa       660
     tagaatttaa ttaattagat taatttttaa aaaaatattt aataattatt tttaagtacc       720
     tagactgtat ttaaaattgt gcaaccacag atcattccac aaaaacaata caattttttt       780
     gttttttttt ccataggaga tcttaaaaga aactgatcat tcgcatgctc caaacttagc       840
     caaaattgag gacaaacaac tggtgaatac tttaaaggat actgctataa cagaacaaac       900
     ttctgtaaga aatattattt caaacgtgtt aggccaaact tctgttccag taattggaca       960
     attaccagtc ataaaatcat tatcaaggac tattcaacgg actcgagtaa caaaagaaaa      1020
     tgctccagtt aatccaagta ataccaaaga tctaattata ccagaaacat ataaattaac      1080
     caacaaaaat gaattttttt tggcatacaa tagtggtagt agtgaaagta gaattttaat      1140
     ttttactact caaaacaatt taaatatgct taaagaaacg gatgacttgt ttggtgacag      1200
     aacttttaaa tctgttccct cgatattttc ccagttatat acaatctatt gctatgcacg      1260
     tagtttagtt attccattag tgtatatatt aatgactagt cgtacaaaag aaacctacgt      1320
     tgaagtttta aggcaattgc taatattaca accagatctg aacccaaaat caattaaaat      1380
     agattttgag caaccattta tttcggtgtt caaacaaatt tttcctaatg ctcatgtaag      1440
     tggatgtttt tttcattttg gctagtgtgt atggcgtaaa ttacaatctt tttgggctac      1500
     aaaagaaata tgcagaagac tcaacgtttg ccctacaagt caaacaatta tgtgctttag      1560
     cattcgtacc tgtccttgat gtagtagaat cttttaatac cattctagag tcccaatact      1620
     ttattgataa cgaacaacta tttgaaccat tagtagatta ctttgaggaa acatggatag      1680
     gtcgaacagt tcgtaatagg aaaagaaaac cattatttca aatagaaatg tggaactgtt      1740
     ataataatgt aattaatgac caccctcgca caaacaatat tgttgaaggt tggcaccatg      1800
     ctttcaatgc atcattggga tgtcatcatg cgactatttg gaaatttata tcttttttga      1860
     agcaagaaca agggctttaa gaagcaaaaa tagaaaaaat tattcttggt gaaaataacc      1920
     ctataaaaaa aagaaaatat aaaaacatag accaatgtct taaaaataca gtagaaaact      1980
     atgaaactac aaatatcaat acatatttga agggtatcgc tcataatttt aatttctaaa      2040
     catttgtatt ctataagact tttataatta cattatatca ttttatatta ttatgcctta      2100
     acaataatta atagtttata tattaactga ttattatttt ttttataatt tctatataat      2160
     atttttttta ccgacgtttt ttagccagtg attattatta ttttttacct gacattttta      2220
     aaagttatga aataaaataa taattctaat ttatatatat ttgtatttta tattattctt      2280
     ttaccagacg ttttttagcc ggatattttt ggtacaggtt ttttttggac cggatcaaat      2340
     gtcgcggatc aattgttgcc ggatattatt taccagacca aatgac                     2386
//
ID   MuDR7x_AP   repbase;    DNA;    INV; 2285 BP.
XX
AC   Contig26943;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR7x_AP.
XX
NM   MuDR7x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2285
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1356-1356 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           548..1807
FT                 /product="MuDR7x_AP_1p"
FT                 /translation="MQKYIQKKNFDNEVLYTENEHHHEAVNENTINRQIVN
FT                 TSCKRKAIEDVSTRPKKIILQELVHNECAKEITVNDINRIRKNMYEKRRKT
FT                 LPANPKSISEVHQALNVLNIETKQKENFLLLNNEKENIIIFSCSTNLKFLT
FT                 SVDTVYMDGTFDYCTRFFMQMFTIHGFQNGHYVPLIFCLLPNKLTSSYIFA
FT                 LRSICEKCKDMNLIFLPANVTIDYEKAIINAATEVWPESNIIGCRFHLTNS
FT                 WWKKIQSLGLSMEYKEKNSEIGKWLRHTFGLLFLDAQEVSDCFSYDFMSDR
FT                 PVNELLTKYSDYLVDNYIGDDCSYPPSLWASLSASLTRTTNACESFHAVFK
FT                 DHFYKRTPHIIPWITVLIENIQTNVYVTLKSINECKTPRKNMNDKRKRNEE
FT                 LISKYQRDEISRYEFVKLISNHYAK*"
XX
SQ   Sequence 2285 BP; 838 A; 323 C; 353 G; 771 T; 0 other;
     gggtgtcacc ggtttccgcc aaaaattacc tttccgtttt ccgccaatac ctttttccgc        60
     caaatcagaa aaaacgtcat tcctttttcc gccaattata aattatagaa tttcaaagtt       120
     tgggaaccct tacgtatcat aatactcata acgataaaca tatggtttat tttgagatat       180
     aatagtctat gttatggtat ataatatctt atatggtggg ttttaaaatt ttatacctgt       240
     atgcgtctct atctacgcag aaaatattat ttcatagatt tagataatat tatctaatct       300
     gtcatctgat atcatgctgc aatagttggt tcgatttgtt agaaatatta cggtattgag       360
     tagtgagtag tgactagtga tcaccgatca gtggataggg tttgatgtgt tttaactaca       420
     ataatgtctg cactattaat tacgagtaaa cgcgaaaaac cacaaattgt gattgataat       480
     tttaaattta gtaaggcata tgaaggagta aataaaattc gttggagatg cattaacaaa       540
     gtatgtgatg caaaagtata tacaaaaaaa aaatttcgac aatgaagtat tgtacacgga       600
     aaatgaacac catcacgaag ctgttaatga aaataccata aatcgacaaa ttgttaatac       660
     ctcgtgcaaa aggaaagcga tagaagacgt aagtacaaga ccaaaaaaaa tcattttaca       720
     agaattagta cataatgagt gtgccaaaga aataacagta aacgacatta atagaataag       780
     aaaaaatatg tatgaaaaga gacgcaaaac cctcccagca aatccaaaat ccatttctga       840
     ggtacaccaa gctttaaatg ttttaaatat tgaaacaaaa caaaaagaaa atttcctact       900
     attaaataat gaaaaagaaa atattattat tttttcgtgt tccacaaatt taaaattttt       960
     gacttcggta gatactgttt atatggatgg gacatttgat tattgtactc ggttttttat      1020
     gcaaatgttt actatccatg gatttcaaaa cggccactat gttccactca tattttgctt      1080
     attaccaaat aaactaacat cttcctatat ttttgcgctt cgttctattt gtgaaaaatg      1140
     caaagatatg aatttgattt ttttacctgc aaatgtgact attgattacg aaaaagctat      1200
     tataaatgca gctactgaag tttggccaga aagtaatata attggttgta gatttcattt      1260
     gactaattct tggtggaaga aaatacaatc tcttggttta tcaatggaat ataaagaaaa      1320
     aaattccgaa atcggcaaat ggttacgaca cacatttggt cttttgtttc ttgatgcgca      1380
     ggaagtatca gattgttttt catatgattt tatgagtgat cgtcctgtta atgaactatt      1440
     aacaaaatac tctgactact tagttgataa ttacatagga gacgattgtt cttatcctcc      1500
     atcactgtgg gcttcgttat cggcaagttt aactaggacg acgaacgcgt gtgagtcatt      1560
     tcacgctgta tttaaagatc atttttataa acgaacacca catataatac catggattac      1620
     tgtacttata gaaaatattc aaactaatgt ttatgttact ttaaagagta ttaatgaatg      1680
     caaaacacca agaaaaaata tgaatgataa acgtaaacga aatgaagaat taatttcaaa      1740
     ataccaacga gatgaaatca gtagatatga attcgtaaaa ctgatatcaa atcattatgc      1800
     gaaataaggt tcgaataaaa tatttaaaat attatatact tatattatat atatttaatt      1860
     ttatttcaac tatgtttcag ttttttacaa cgtgatctca atttcaagtt tcgaccaatt      1920
     aatcaagcgc tgacatactg acatattgtc atcaagacaa tgcaaatata aatatcattt      1980
     ttttaatact tatatctatt atacctacct aataagtgtt atgataaaat tatatttttt      2040
     gacttatttt gtcggtacac taataggtat cattacttat atataataag taataactgg      2100
     aaaaaatatt attatttttt aactctatag tgtgcaatta ttaaatcttt acgtaagggt      2160
     tcctaaactt taaaattcta ttatttataa ttggcggaaa aaggaatgac gttttttcta      2220
     atttggcgga aaaaggtatt ggcggaaaac ggaaaggtaa tttttggcgg aaaccggtga      2280
     caccc                                                                  2285
//
ID   MuDR8x_AP   repbase;    DNA;    INV; 1928 BP.
XX
AC   Contig51986;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR8x_AP.
XX
NM   MuDR8x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1928
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1357-1357 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(521..601,712..1512)
FT                 /product="MuDR8x_AP_1p"
FT                 /translation="MKNERIISTMFSEKGETLKVVNDFKFGFNSHSRKTRI
FT                 KNFESPKVNNSLKRKAITDVSERPSKLFHRLLKEENVSTLTLTDVTYYIKY
FT                 NMHYARRTSCPKLPKTISDVHSILNSIEMIRGCRFHLGQSWWRKIQELGLA
FT                 SDYIQNNEIGKYLALTFGLSFLEPQEVGDFFSFEMSAIQPDEHKITEFANY
FT                 LVDTYIGENSIFPPDLWAEKSSSSQKTTNACESFHSKFNKFFDSPHPNIYT
FT                 FLEVLKNMQTDTTILIRSSLEKRRVPRKPIRERIQYIENKIMKLQSKIMLT
FT                 Y*"
XX
SQ   Sequence 1928 BP; 730 A; 263 C; 276 G; 659 T; 0 other;
     ggcgcacacg aattgcgtac caaagcaggt aaacgaacct ttttgaacga attgcgtccc        60
     ggacgcaatt catgttactt tttgccttaa tatatttttg gttgttttca attttttttt       120
     taattttgat aatattttta aattttttaa caatttaaat atttatcaca aatattatta       180
     ttatatgaaa actagatttt agtgggtttg tacttttata gatactttta taaaaatatt       240
     tcggactata cggactttcc aatcaatatg taactatgga ttataagcga gacactatat       300
     aagataacat cacatatagt atgatgtagg tgatcatgtt aacaccacag tgattagata       360
     caggtgcccg attaatatag ataatccact tttcagtcat aactgataaa attagtgaca       420
     ccagaattgt ctgacaagta acattcagta gctacattat attggtgtcg tctgcagtct       480
     gctcaaattt actatttatt cattcaacgt ttttattaaa atgaaaaatg aacgtattat       540
     atcaacaatg ttcagtgaaa aaggcgaaac attaaaagtt gttaatgatt ttaaatttgg       600
     ataacacaaa aattattcga atggagatat tagatggaaa tgtacaaata aaaactacag       660
     agctttttta cgaatggata cacaagataa actaaaagtt agtgttagta atttaattca       720
     cattcacgaa aaactagaat taaaaatttt gaatcgccaa aagttaacaa tagtttaaaa       780
     cggaaagcaa ttacagacgt atcagaacga cctagtaaat tatttcatag actattaaaa       840
     gaagaaaacg tgtccacgct aacattaact gatgttacgt actatataaa atataatatg       900
     cattatgcac gtagaaccag ttgccctaaa ttaccaaaaa ctataagtga tgttcattct       960
     attttaaact cgatagaaat gataagaggt tgtcgatttc atctcggcca gtcttggtgg      1020
     agaaaaatac aagaactagg cttggcttca gactatatcc aaaataatga aataggcaag      1080
     tacttagcat tgacatttgg attatctttc ctagaaccac aagaagttgg agattttttt      1140
     tcgtttgaaa tgtctgctat tcaaccagat gagcacaaaa ttacagagtt tgctaattat      1200
     ttagtagata catacatagg tgaaaattca atatttcctc cagacttatg ggcagaaaaa      1260
     agttcgagct cacaaaaaac tactaatgct tgcgaatctt ttcattcaaa atttaacaaa      1320
     ttttttgatt ctcctcatcc aaatatatac acatttttag aagttttaaa aaatatgcaa      1380
     accgatacaa caatattgat aagaagtagt ctagaaaaac gacgagtacc aagaaaacca      1440
     ataagggaaa gaatacagta tatagaaaat aaaataatga aattacaatc aaagattatg      1500
     ttaacatatt agccaataaa tataaataca gacaaaatta aattactaac ctatgatatt      1560
     atgattttat aatttaattt ttttttttta aatatgtgaa tataaccatt tattcctatg      1620
     atattacaat ttaaattttc taaaaatatg taaatatttg acgatttatt atatatgatt      1680
     tgtgaaatta cgtttgctca gttttaattt tttttttttt gaatgatttg tgaatatgac      1740
     catttatact tatgaaatta tgatttttta aaaatatgtg aatatatgac gaattattat      1800
     atacgatatt atgttttcac tttaagaacc attcaactgt agaaaaaaag gtaacacgaa      1860
     ttgcgtccgg gacgtaattc gttcaaaaag gttcgtttac ctgacttggt acgcaattcg      1920
     tgtgcacc                                                               1928
//
ID   MuDR9x_AP   repbase;    DNA;    INV; 2125 BP.
XX
AC   Contig13211;
XX
DT   26-JUN-2009 (Rel. 14.07, Created)
DT   26-JUN-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   MuDR-type DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDR9x_AP.
XX
NM   MuDR9x_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2125
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1358-1358 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(256..876,923..1474)
FT                 /product="MuDR9x_AP_1p"
FT                 /translation="MSTIFDSDNVCLTAKYRSCILRILYSFTVMSFKNIEY
FT                 LILQKNKPLVKYDGFLYRKNCENGEVSYWRCVEVEKCRGRINIKNYLVIKD
FT                 SSFKHVHVPNPAKIKVKTLTEEMKKSALTTQHNPSKIISDIVITASSNVNQ
FT                 GNLTSVFNLKRIIQRTRQRNQRSPPNPLTLKDLGEIPDMETCINKQTMEVS
FT                 FCCSIITKLTVLQKIEFTYWFANGTFKSAPSIFTQIYAIHVLKYNTVILVV
FT                 FALLRDKSTATYSYLIKTLKSHIPLNPKTIMTDFEQSAILAFKENFPNVTS
FT                 RGCHFHSIQCVWQKIQSITTIHEKYITDAECCIQIRLLPALAYLPAYDVIA
FT                 GFEHLCESDYYIEHEELFRSLLDYFEDTWLGKTVHKRRRGPTFSLEM*"
XX
SQ   Sequence 2125 BP; 807 A; 303 C; 320 G; 695 T; 0 other;
     accgcgaatc caaaaaagcg aatttcaaaa tagtgacgga aaaatagcta agttgaaagt        60
     agctaaaaac cataatagcg aatgttcaaa acagctaaag tatattaatt gtattattta       120
     tctgtagtat taagtattaa gtattaagtt ttaagtatat aaagatacag ataatgacaa       180
     tcagttttat agctgggtta tccaatatta ttgtccggtc ggaccaagta taataataaa       240
     aaaggtggaa tagatatgag cacaatattc gacagtgaca atgtatgttt aaccgcaaag       300
     tatcgcagtt gcatacttcg gatattatat agtttcacag ttatgtcgtt taaaaatatc       360
     gaatatttaa ttttacaaaa aaataaacca ctcgtaaaat acgatgggtt tctgtatcgg       420
     aagaattgtg aaaacggcga agtttcatac tggagatgtg tggaagttga aaaatgtcgg       480
     ggtagaatta acattaaaaa ttatttggtt attaaagatt cttcattcaa acatgtacat       540
     gtccccaatc cagctaaaat caaagtcaaa acattaactg aagaaatgaa aaaaagtgct       600
     ttaactactc aacacaatcc aagtaaaatt attagtgata ttgtaattac ggcgtcatcg       660
     aatgtaaatc aaggcaatct cacaagtgta tttaatctta aaagaattat ccagcgaact       720
     aggcaacgta atcaacgctc tccgcctaat ccactaactt tgaaagattt aggagaaata       780
     ccagacatgg agacatgtat aaacaaacaa acaatggaag taagtttttg ttgttcgata       840
     attacgaaat taacggtcct acaaaaaata gaattttaat attttgtacg agtgaaggat       900
     taaagttaat gtctgaatct gaacatattg gttcgccaac ggtacattta agagcgctcc       960
     ttctatattc acacaaatat acgcaattca cgtattgaaa tataatactg taatactagt      1020
     agtttttgca ttattacgtg ataaaagtac tgcaacatat tcttatttaa tcaaaacact      1080
     aaaatcgcac attccattaa atcctaagac tattatgact gacttcgaac aaagtgcaat      1140
     attagcattt aaggaaaatt tccccaatgt aacttctcgt ggttgccatt ttcactcgat      1200
     tcaatgtgta tggcaaaaaa tacaatcgat aaccacaatc cacgaaaaat atataactga      1260
     tgcagaatgt tgtattcaaa tacgattgct accagcactt gcctatttac cagcatatga      1320
     cgtaatagca gggttcgagc acttatgtga aagtgattat tacatagaac acgaagaact      1380
     ttttcgatca ttattggact actttgaaga tacttggctt ggaaagactg tgcacaaacg      1440
     acgtagaggt ccaacatttt ctttggaaat gtgaaattgt tatgacttga tagatttgcc      1500
     aaagactaat aattctgtcg aaggtaatta atttctataa ataaatatat ctaaaatata      1560
     ttaagtatgt ttaatagatt tttacatatt atataggttg gaatcgtggt tttaattatc      1620
     tacttggatc gtgtcaccca acactttgga aactcgtaga agggttcaaa caagaacaga      1680
     ctaacacaga aatgaaagta gagcaataca taagcggaca aaaaccaata aaaaaaaaat      1740
     atatcaagat actgcattaa ggattttaga aattcaaaaa caatatacaa aaagaaatat      1800
     tttaaattat ttgaaaggca tagcctataa tttatcacta caagtataaa ctacaaatat      1860
     aatattataa tatattttta tgtttttttt tttaaattct ttatatttaa tttaatatat      1920
     gactatgttt gacgtataat attaataatt ctgaaataat atacttttta aatacctagg      1980
     taatatattt ttatttttta tattaaatta ttttaaaata atatacctta gctgttttga      2040
     acattcgcta ttatagcttt tagctatttt atacttagct attttgccgt cgctattttg      2100
     acattcactt ttttggattc gcggt                                            2125
//
ID   MuDRx-1_AAe repbase;    DNA;    INV; 4514 BP.
XX
AC   .
XX
DT   27-APR-2011 (Rel. 17.12, Created)
DT   27-APR-2011 (Rel. 17.12, Last updated, Version 1)
XX
DE   DNA transposon family from Aedes aegypti.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDRx-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4514
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2471-2471 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99% identity.
CC   The 5' end is uncertain. It show similarity to MuDRx elements,
CC   like MuDR1x_SM and MuDR5x_AP.
CC   The exon-intron structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2313..2459,2689..4056)
FT                 /product="MuDRx-1_AAe_1p"
FT                 /note="FLYWCH zinc finger and MULE transposase
FT                 domains."
FT                 /translation="MSDTESETSVSLECDDSRDDEICPEILKTSKGKDLLT
FT                 YEGFIYYANRKPIDNSHYWECRERAHKTKRDGSKCPSRVVTQFQNGQHHII
FT                 SQTNHNHGNDPKKILEFKMRNTLKRRALEDSSGPAKVIRNTSADFPAHMQS
FT                 SITTEAQRKMIKRTRAVANTSEKEPETLEEFCVPDQFTQTLDGDRFLLADI
FT                 VEDTERALIYTTSDNIRKLSEAKYWVCDGTFDTVPGHFRQLFTIHASIAPS
FT                 QKHTYPMVYVLMSSKTESLYRQVFSTMIEKADELEIELNPHSILTDLEKAL
FT                 INACKAEFPDSLHHTCFFHLSQNLWKHVQSGGLQGAFSSDVELFIFFKKIQ
FT                 ALAFLPWEKIPEAFEKLKKTAPTILQDFVSYFETTYVSGRIRKTTKTGRVI
FT                 RVDPMFHPALWSVYDSINNEIPRTTNQIEAWHRRWNGLVGSHVGILKMLKE
FT                 FQLEEKHTRGQILALMSANSSRKRKTDVEENDRKIMKIVSDFDNYEMYDYL
FT                 TAVATNLL*"
XX
SQ   Sequence 4514 BP; 1512 A; 859 C; 820 G; 1321 T; 2 other;
     agggtcgttt ggcataacgg acattkggca taatatmaaa ccatctgaaa agtaagggtt        60
     atttggtata ataattcaga tactcctttt tcacatagca ctgttgtaat attacgcaaa       120
     agaatgggtc atgctaaaaa gaaggggaaa ttcctatata aaaaaaatag tgcgtcacat       180
     cgctatagca atagccctca aaagaataca ttatgtttaa aagaagggta aatctctaga       240
     taaatatcat gactaaacag gataacagaa gatgaactag ggtgtcaatc acttacgcaa       300
     tatttcttaa aggcgctgca cagattgaaa acaaggtctt gactttggaa aatagaagaa       360
     aaaaatgcag caacattgct gctacaatta ccttttaaat tacatctcgt gttcaaacga       420
     aagagttaat ctatagagct tagtgacatt tgaacgcacg aacactagca tacgctcgtc       480
     atacacagtt tttttttgtt ttcctcaaag aaacttgcac acgctttcca gactcatcaa       540
     aatgcatatg gaaatattac ccaatttgaa aaatttacac ccggattctg gatgtttttc       600
     gagacagagt gcatattgtt ttcctctaag gttcacaacc acatctacac tagggcaccc       660
     ataccattgg gcgtgataac cactataaga ataacgccaa cattgtcact tgacaaaact       720
     acggcagttt aacactcaca aaaaacatgt gctaatcaaa aagataagct aatgcataga       780
     tttgcattga attattcata catcataaaa cttgaactta aaaatctcac tcatacgaac       840
     aagtcatgca aactttatcc cgtttttcaa cgcctatgat gacaatagat ttgttagtct       900
     gaaacatttc aagctgtgtg gtttattttt ttttgtggag gcatcattgc tgcttttaat       960
     ctagttcttt ctagttcaaa ttactgatct aattgttttt ttttttaaag atttttgctg      1020
     ctttaaagtt atgctcaata ttctagaaat tatgtctaga acatatagag aaaatttttg      1080
     gagtgaagat atattgttcg tcgtgcaaga agtgattggg ccggtgtaca cttggccttt      1140
     gtacattaaa aatattataa gatcgagatc attccgttat tctgaaaggg tgaaattaac      1200
     aacatttttt ttcgtaaatg ggtttcaaga cagtgaaagt tggctcaaat ttgtaattcg      1260
     tgttaaaggt gtctattgtc aaaagtatcg gaacgacctc aaccatctac taatatatta      1320
     tatgcgtgac gacatacagt gtacatattt ctcatattgt acgactcaca aaaggtatga      1380
     gttcctaaat ggctctccca gacagccaag aaaacaataa ataaaaatta gtaacaacta      1440
     caaactacat tatgtaacaa aaatttcaaa gaaataatcc atccatcttt tcatgatttg      1500
     aatatcacca atattaccaa gacgacaaaa aaataatgtg agagacattc aagcctgaac      1560
     gcaaaataaa acgagcaagt attgatcaaa aggccactca aacaacaacg taggtattta      1620
     aatgtgtgaa cattttaatt gtccaaaaat ggaatttcct tattattatt gttaatatta      1680
     ttatgtacat gctacactct gcctctacgc gtacactttc aatgttctat atgatattct      1740
     ttctacgtgc gcaaaaggga ggcatacgtt taagcatttt tcaaactgtc cgatacaact      1800
     cactgctggg tagcaagact aatacggttg atgtcgatag aacaagtaca gaatatcgtt      1860
     gatagtcatc atgttacatg tgtattttta ttaattacaa ttcatgtttt tcaatgcatt      1920
     cctgaaatga gatacttgat catatttttt tgtaattgag tatgaatctt gcatgtgggt      1980
     tgtggaaccg ctgatctcga tgtcccaatt agataaatac tagtcacgaa catgcacaat      2040
     gtgtcggtgg taaactacac atgcgtacac gaaacaatac ttacggagcg tccataaacg      2100
     acaacacaat attagcaatt attattccca ctcttccgtc gtaaagtgtt tgcataaacc      2160
     ttatacataa ccggtcgtag atttcccttt tttttctaaa aatgccacgt tgtttatgac      2220
     tggtacctta ggctagatac cattgtctta cccgccaagc cctgttcatt tcatctctgt      2280
     tcgtgttgag aagtcggaga gtaaagttca cgatgtcgga tacagaaagt gagactagcg      2340
     tatcattgga atgtgatgac tcgagagatg atgaaatctg cccagaaatt ctaaaaactt      2400
     caaaaggcaa ggatttactt acgtatgaag gattcatcta ctacgccaac agaaaaccgg      2460
     taagtttgat tatgttttac ggagaggaag cacgtgcact ttgaggttat tttttgacaa      2520
     tgcgtatatt gatcacgttg tttcctaacc acaaaaaggc acgcgcttgc ttacatcaca      2580
     tttatcaaac atgaattatt tcacgacgat ataaaaacag tgtataaata aaccataccg      2640
     taatttgtac aattgtgaat aattgttttt tttatccttt cataatagat cgataattct      2700
     cactactggg aatgtcgaga gcgtgcgcac aaaaccaaac gggatggtag caaatgcccc      2760
     tcgcgtgtgg tgactcaatt ccaaaacggc cagcaccaca taatttcaca aaccaatcac      2820
     aaccatggaa acgaccctaa aaagatcctc gaattcaaaa tgaggaatac actcaagcgg      2880
     cgtgctttag aagattccag tgggcctgcc aaagtgattc ggaatacctc agcagatttc      2940
     ccggcgcata tgcaaagcag cattactacc gaagcccagc gaaaaatgat aaaaaggacg      3000
     cgggctgtgg cgaacacctc ggaaaaagaa ccggagactc tggaagaatt ctgtgttccg      3060
     gatcaattta cccagaccct cgacggtgac agatttcttt tggctgatat cgtggaggac      3120
     acagaacgcg cattgatcta cacgacgagc gataacatca gaaagttgtc tgaggccaag      3180
     tactgggttt gtgacggaac attcgacacc gtcccagggc atttcagaca acttttcacc      3240
     attcatgcaa gtattgcccc gtcacagaaa catacttacc cgatggttta tgtgctcatg      3300
     tcgtcgaaaa ctgaatcgct ttatcgacaa gtattcagta caatgatcga aaaagcagat      3360
     gagctggaaa tcgagctaaa tccacattcg atcttgaccg acctggaaaa agcattaatc      3420
     aatgcttgca aagcagagtt tcctgattct ctacatcaca cctgcttttt tcatctgagc      3480
     cagaatctct ggaaacacgt ccagtcgggt gggttgcaag gagctttcag cagcgatgtt      3540
     gagctcttta tttttttcaa gaagatccaa gctctggcat ttttgccttg ggaaaaaatt      3600
     ccagaagctt tcgaaaaact aaaaaaaaca gcacccacaa ttctacaaga cttcgtgtcc      3660
     tacttcgaaa caacttatgt ttcaggtagg atacgcaaga ctacgaagac tggacgtgtc      3720
     atcagagtag accccatgtt tcatccagct ctatggtctg tctatgacag tatcaacaac      3780
     gagattccta ggacaaccaa ccagatcgag gcctggcata ggcgctggaa cggtctagtt      3840
     gggagtcatg taggaatttt gaaaatgttg aaagaattcc agctggaaga aaagcatacc      3900
     cgcggacaaa ttctggctct aatgtctgct aattccagtc ggaaacgcaa aaccgatgtg      3960
     gaagaaaacg atagaaaaat catgaaaatt gtgagtgatt ttgacaacta cgaaatgtac      4020
     gattatttga cagctgttgc tactaatctt ctgtaatttg ggaaaatatg tcagtttttt      4080
     cgggatttgt tttttaaagg cagttacgcc ctatccacaa attgtttaga aatctttaat      4140
     tatgtatgta aacattatta accatttaga ataacataga agataagtag tttataattg      4200
     ttattagaaa tacaaaattt tactgaaaga gtaaattgta aatgtttaaa atagaaaaaa      4260
     aaaacagatt cagttgttgc taaaataaaa cggtaactaa atgctaaaat cttcaattta      4320
     agtatgtaca gaaaatatat tgaaattatg ccaaatgtcc gttatgccaa atgaccctca      4380
     tctttcactt agttaaaaat tatgccaaat gtccgttatg ccaaatgacc gttatgccaa      4440
     atgtccttta tgccaaatgg cgttatgcca aatgacctta tgccaaatgg ctttatgcca      4500
     aatggcccgc tccc                                                        4514
//
ID   MuDRx-1_BTa repbase;    DNA;    INV; 2090 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; MuDRx-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2090
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 645-645 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus. TSDs are 8-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           423..1919
FT                 /product="MuDRx-1_BTa_1p"
FT                 /translation="MANPRLLKSQKNKPVLIHDDFLYQRHSANKVNTVIYW
FT                 RCHNRGSCDARCSTTGNLENIQIKTSGSHKHTHAPDVASVAVRTFLSQLKE
FT                 YATNAPNEGASNIVRDHVATIDNEEVLAMMPERNDLRRTVNRVQNKTRPPL
FT                 PKRINDIEIPRRYRRTKTGQRFLMHDSGADDPNRILIFTTVANMQKLAASI
FT                 IMFSDGTFKIVPHQFLQLMTIHGIYKGFCFPFVYVLTVNRTEETYSNVYTE
FT                 LKAFAVRHNLNLNPPHLMSDFEIANINACREAFPQAQIHSCLFHFEQSMFK
FT                 NIQKLELVQYYRDLENPEIRNSLLQFMALPFVPLDEILTVFNELKDDAPDE
FT                 VEDFVQYLERTYVKGRPARGRRPAVPPRFPPKTWCVYDLVLNQLHRTNNVV
FT                 ESYHSKYQKMVKSHHLNIWKFIEYMQKDQRDTEQLCQQLDLGHTRIKQQIS
FT                 KKSKRNQERILQRVQRYQEFKDEDDIPRYLRGIAYYIRVSNEPEDENNEES
FT                 DQE"
XX
SQ   Sequence 2090 BP; 703 A; 411 C; 419 G; 557 T; 0 other;
     ggtgataggt caaaatgtcc aaaaaaaaat gtccaacaag caagaatgtc cagagttgag        60
     aatgtccata ttgtaaaaat gtccaagtat cttaaatgtc caatactggt tttttggcca       120
     aagacaaaaa tgcccaaaag tccattccct ttgcaaaaaa attagaaggt ggcgacattg       180
     tcggcttgaa tactaaataa attcgaatcc atggagacga cggggaagat ttgagaatct       240
     ttttttcttg aactaacctc agttgtgaaa ctttttggct tttgtaaaat tttcgtttgt       300
     taaaaaatgc ggtaaaacca attacagggg caaaatttta caatttgtga tttttttatg       360
     attctaaact aaactaattg gtgaaaacta aaaaaattgg tgattttatt gtgatttttg       420
     tgatggcgaa cccaaggcta ttgaaaagcc aaaaaaataa acctgttctt attcatgatg       480
     actttctgta tcaacgccac tcagcaaaca aagtgaacac tgtaatttac tggaggtgcc       540
     ataacagggg tagctgtgac gctcgatgct cgacaacagg aaatttggaa aatattcaaa       600
     taaaaaccag cgggagccat aagcatacac atgcgcctga cgttgccagt gttgctgtga       660
     gaacgttctt gtctcaacta aaagaatatg caacaaatgc accaaacgaa ggagcaagta       720
     acatagtgag ggatcacgtt gctacaatag acaatgaaga ggttttagca atgatgcccg       780
     agagaaatga tctccgtcga acagtcaatc gagttcaaaa taaaacccgg cctccattgc       840
     caaagagaat caatgacatc gaaatcccgc ggaggtatcg acggacaaaa actggtcaga       900
     gatttttaat gcatgattct ggtgcagatg accctaacag aattctaatc ttcacaacgg       960
     tcgcaaacat gcaaaagcta gcagccagta tcataatgtt tagcgacgga actttcaaaa      1020
     tagtgccgca ccagttttta caacttatga cgatccacgg tatctataag ggtttctgct      1080
     tccccttcgt gtatgtactg acggtcaaca ggactgaaga aacgtattcc aatgtttaca      1140
     cagagttgaa ggcgtttgca gtgcgtcaca atcttaacct aaatccacca catttgatgt      1200
     ctgattttga aatagctaac attaatgctt gccgagaagc ttttccgcaa gcacaaatac      1260
     attcttgcct gtttcatttt gaacagtcta tgttcaaaaa cattcaaaag ctggaattag      1320
     tgcaatatta cagggacctg gaaaatcctg aaattagaaa cagtctcctt caattcatgg      1380
     cactaccatt tgtccctcta gatgaaattc tcaccgtttt caatgagcta aaggatgatg      1440
     cccctgacga agtggaagat ttcgtacagt accttgaaag aacctatgtg aagggtagac      1500
     ctgcaagggg gcggcgtccc gcagttcccc caagattccc tcccaaaacg tggtgtgttt      1560
     acgacttggt attaaaccaa ctacaccgga ctaacaacgt cgtcgagtcg taccactcca      1620
     agtatcagaa aatggtgaaa tcccatcatc ttaatatttg gaaatttata gaatatatgc      1680
     agaaagatca aagggataca gaacagctct gccaacagct cgacttgggt catacgcgga      1740
     tcaaacaaca aatttcaaag aagtcgaaaa gaaatcagga gagaatccta cagcgcgtcc      1800
     aacgctatca agaattcaaa gatgaagatg acattccacg gtacctaagg ggcattgcct      1860
     attacattcg agtttccaac gagcccgaag acgagaataa tgaggaaagt gatcaagaat      1920
     gaagaatatc tagaaacaaa aataaatgga cttttgggca tttttgtgtt tggccaaaga      1980
     accagtattg gacatttcag atacttggac atttgtaaaa tagggacatt ctcaactctg      2040
     gacattcttg cttgttggac attttttttt ggacattttg acctatcacc                 2090
//
ID   NAUT1_NVi   repbase;    DNA;    INV; 546 BP.
XX
AC   .
XX
DT   06-NOV-2007 (Rel. 12.11, Created)
DT   06-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; NAUT1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-546
RA   Jurka J.;
RT   "NAUT1_NVi: Putative non-autonomous transposon from Nasonia
RT   parasitic wasp.";
RL   Repbase Reports 7(11), 1171-1171 (2007).
XX
DR   [1] (Consensus)
XX
CC   42 bp TIRs;  >3800 copies/genome.
XX
SQ   Sequence 546 BP; 173 A; 113 C; 75 G; 185 T; 0 other;
     catatcgtcg ctccctacga agagtagcac tgttcaaatt tcccgtcata agtagcacaa        60
     ctcatttgac gcacgctaga ctagcacaac tcaaaatttc ccgcgaagac tagcacaact       120
     caaactttaa acaacgaatt tctataaaaa tttcccgatt tttgcgaaac tgtccctaat       180
     gaacattttt aaatattcac aatttacaac tttttaccga atttaaaatt gttttcacaa       240
     atacaataat tttttacaaa catttttttt taattattca ctttttttag aaaccttcta       300
     aaatttccga aaccttttaa aactttgagg tttgtctgtc tttgtccaag gttttcatga       360
     acttaaccaa ccaaataacc caataaaaac gtaaaatact cacattttaa gtaatataaa       420
     gtcgcgagtt gtgctactct tggcggcatt tctgaactgt gctactcttc gcggcaaatc       480
     gtgagttgtg ctagttttcg tttgaaaatt tgaactgtgc tagtcttcgt acggagcgac       540
     gatatg                                                                  546
//
ID   NAVIHAT1    repbase;    DNA;    INV; 5547 BP.
XX
AC   DS265642;
XX
DT   14-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   hAT-type transposable element.
XX
KW   hAT; DNA transposon; Transposable Element; NAVIHAT1.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5547
RA   Jurka J.;
RT   "Navihat1: hAT-type DNA transposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1172-1172 (2007).
XX
DR   EMBL/GenBank/DDBJ; DS265642; Positions  481866  487412.
XX
FH   Key           Location/Qualifiers
FT   CDS           3616..4878
FT                 /product="NAVIHAT1_1p"
FT                 /translation="MEQLLGVPNISSSSGINQAQAVFDTLNDWSLLENIEA
FT                 LCCDSTASNTGRINGACVLLEILIDKDLLYFICRHHIYELVLRSTFEIKFA
FT                 KTTGPEVQLFKNFGDFWKSVDQTKFEPGISDTFVIESLQDVKEEILDFCSK
FT                 YSKKDLNRSDFKEFLELVIIFLGGKLPSGITFYAPGAIHHARWMAKAIYCL
FT                 KIFIFRKQYLLDKKDVEVKCRAVCTFIVRVYVHAWFCTPFAAQAPNQDLKF
FT                 LKCLYEYRRIDESISDCAVRKFMNHLWYLTPQLTALAFFDFTISNKEKLKM
FT                 CEALQSNTSAFVYGKRILANEQNLDKIVNSSVSDFICKDTYETFRRLKIDT
FT                 TFLEKNPSKWAKDRNYTHGLEVVKNLRVVNDTAEVKLITEFNNLLTKDEKQ
FT                 LQYLLPVIKDYRSLFSDSKKETLMRPI"
XX
SQ   Sequence 5547 BP; 1961 A; 808 C; 909 G; 1869 T; 0 other;
     cgggcaaata tagcttcttt atacctcaaa aaccatgcgc atataggttt tgaacccata        60
     gcatcaattt ttcaagtgcc tcaaagcacc cgaagtttct tatgggattt catgttaaaa       120
     aagggtcaaa acgtttatcg ttctgaaaac ctgtgaaaat tttggaattt taactttgga       180
     agtatatttt cccatgtatt ttgagccgct gaatcgaatg gtgctattag ttttcgccgt       240
     aatagtgaaa taaaaaagtt ataagctaaa atcgttgaaa aactcgaaaa atcgcaaaaa       300
     aacgtgtaaa aatggacttt taaagtttgt aatcagtgat aagttggaaa gtttttttca       360
     aaaacataca tttttatgta ttttgaactc attaaacgaa tggtgcaatt ggcttttgcc       420
     gattcaattg agaaaacaag atataagcca aaatcgtcaa aaaggtcgaa aatcacggta       480
     gtgaccaaaa aatgggtttg ttacaatgtt actaatacga gatcaatttt tttatacata       540
     aaaagtatag ttatacatat ctgaaaaatt cttttgtata ggatacgggc tatattcaaa       600
     aaccggaagg gaaaccggaa tggctgttgt cgttccagaa ttcttattcc ggattttcgt       660
     tccatcgatg ggaccgcgat ctaaagcatt ttcggatcag cgtagggatc agctgacacg       720
     aagtaacgtg aatacaaaat ggtagagttg aatgtataca tattatatta tacaacgata       780
     aacaataaac actgtacgtt ctctctatca tcggactcag agcaataagc actgcacggc       840
     gagcatatag cacatgtaaa cataagaata tttatattaa acttattttc ctatttaacc       900
     acggctcaat ttatttcaac aggtactttt taatttcgag atatattgct ccgcatgaac       960
     aattttattt agtttttcaa caatggctta taatttacgc gaaagagtca atcacattgg      1020
     atattgtact aatcaaatag ttgcaactaa taatctacca acgataaaac aagtattagc      1080
     tgctttattc tataacctac gaagagtttc aaagtctgta cgtgaaagtg cgaagttaac      1140
     cattgaagag tgtatcatta tttggaagaa agctcgaatt cctacgcaag aagataaaaa      1200
     atgtgtcatt aaactggagg ctgaatatga aagatggaga aaaatacaaa gaaatgcttc      1260
     acgtagatca gacactcaaa taaaaaatga acaaacatat aaagaaagca taaacaaatt      1320
     atttgacatt gcttgcgcag atgctttgaa gaagatggaa gacgaatctg ataaacagtt      1380
     tttacttgat cagagaggta attatatttt gtttttgaat acttaattat gacacgactg      1440
     aacatggaaa atagaaatgg tggttatagt cgatgctgta gaaagaactg atgatctaca      1500
     tatagttaag ctttgttcaa aagtgagttc tacggagagc tgaaattttg cattttaagt      1560
     gatatctttt attctttcta agatatagac ttaaaacttt acaggtaagt gtaatttaac      1620
     ttaattaaca ataaaaaaga agttatagta cttcaagtcc ttgaaatata tcagcaagtc      1680
     ctaaaagcat gaagtttgac aaaaagttgg ggttgcgctg atattgtata ttacattttt      1740
     tctcatatct ctggatctat gataggtaga gatttgagac tttgcataca ggcctatttt      1800
     actttaatat aatgagaaaa acagttggat taaatttaac aatttttgac atttatttat      1860
     taaaaaactt gacattttga tattggtcga aattgccgct aaggtaggtt ttttcgtcaa      1920
     gtgaattttt atttatacgt ttaattaatg caaatagttc ttaaaataac taaatggtta      1980
     gtaaagatat tttattacaa aaaaatcgca aaaacgaccg gccacgactt aattatacat      2040
     tgaagaatct ggtatctgct ttgcactttc tcataagtga agcattttaa tagcatatgc      2100
     agcaaaactg cattgcaatt gcaataatta agtcgtagta ggtcgttttt gcactaattt      2160
     ataataagtt attcaataac aatcagttct tttaagagct atttgcatta attaaatgta      2220
     tgaataaaaa ttcactggct gaaaaaacat acctcagcgg caatttcaac caataacaga      2280
     atgtcaattt tttagataaa taaatgtcaa aaattgttaa atttaatcca actgtgtttt      2340
     tctcattata ttaaagtaaa ataagcctgt atgcaaagtc tcaaatctct acctatcata      2400
     gatccagaga tatgagaaaa aatgtaatat tcaataatat cagcgcaacc ccaacttttt      2460
     gtctaacttc atgcttttgg ggctcgctga tatatttgaa agacttggag tactataact      2520
     tctttcttat tattaattaa gtaaaattac acttacctgt aatgttttaa gtctatatct      2580
     tcgaaaaaat aaaagatatc acttaaaatg caaaatttca gctctccgta aaactcactt      2640
     ttgaacataa ctcagcttta tagcgatcac gccatgcagt tgcaataaac aatttttttt      2700
     attaaaggtt ttctgaattg atttaaaaaa acaattttgt aaatttttta aagtggcctg      2760
     ctctctcaaa aaatacagtt tgaaattatt gtatgtacaa aataattgat taattatgaa      2820
     atactttttt ttaaacttgt ttatttcatt ttttattaat gaccttgatt gtagaaggtt      2880
     agattagaat tacaaaattt tgtttttcag ctctgcaaag aaatgaaact cttagttcca      2940
     gtacctcaac aacttataca gacacaagta agccatcacc aatggaagtg gactatgaaa      3000
     gcctcaatat tataaagaat gaaatttcgg ttaccatcga ccaggacaag gtagtcgatg      3060
     cttcattaaa aatgcaaaag gatgattctc gtagtatggc gacaaaaggt ttgcattttt      3120
     gaatagtcag ttgatatcag tttttactaa tagagaaaaa atgtatttat agcataattt      3180
     tattttatta acctttaatt taatctcttc tttaatttta tttacagaag atttacatga      3240
     attgcttgaa acagagtttg aatctccatt atttgaaagt acacctcctc tgaaaaagct      3300
     actgaaccaa ttatgactgc gaaattggct acagtattag ataaatgtaa aattagtaaa      3360
     agagacgtaa tgcatttgtt gatggccgct gcggaagcat tcatcattga tacgcgcaat      3420
     ttagtattaa acacatcatc tattcacagg gttgatcaaa attttcgcaa agaacgatat      3480
     gaggcaatta aaaaacttgc tccacaactt ttttctggtt taccgagcac catccactgg      3540
     gattgaaagt tgctttcagg atatttacga agagaaacta ctgatagact agcgattatt      3600
     attacaagta atggaatgga gcaactcttg ggtgttccaa atatctcttc tagtagtgga      3660
     ataaatcaag ctcaagcagt attcgatact ttaaatgact ggtctttatt agaaaatatt      3720
     gaagcgcttt gttgtgattc aacagctagc aatactggtc gaataaatgg agcttgtgtg      3780
     ttattagaaa tattaatcga taaagatctt ctctatttta tctgccggca tcatatttac      3840
     gagcttgttc taagaagtac ttttgaaata aaatttgcta agacaactgg tccggaggta      3900
     caattgttta aaaattttgg agatttttgg aaatctgtag atcaaacaaa atttgaaccg      3960
     ggtattagtg atacttttgt aattgaatct ctgcaagatg taaaagaaga aattttagac      4020
     ttttgttcga agtattcaaa aaaggattta aacagaagtg atttcaaaga atttttggaa      4080
     ctagtcatca tttttctagg cggaaaatta cctagtggta taacttttta tgcacctgga      4140
     gctattcatc atgctaggtg gatggcaaaa gctatatatt gtttgaaaat attcatcttt      4200
     cggaaacaat atttgctaga taaaaaagat gttgaagtaa aatgtagagc cgtttgcact      4260
     tttatagtaa gagtctacgt tcatgcctgg ttttgtactc catttgctgc tcaagcacca      4320
     aatcaagatt taaagttttt aaaatgtttg tacgaatata gaagaattga tgaaagtata      4380
     tctgactgtg ctgttagaaa atttatgaat cacttgtggt atttgactcc gcaactaaca      4440
     gcactagcat tttttgactt tactatttca aataaagaaa agttaaaaat gtgcgaagct      4500
     ctacagtcaa atactagtgc gtttgtttat ggaaaaagaa ttttagccaa tgaacaaaat      4560
     ttggataaaa tagtgaattc aagtgttagt gattttattt gcaaagacac ttatgaaact      4620
     tttagacgtt taaaaattga cacaactttt ttagaaaaaa atccatcaaa atgggccaaa      4680
     gatagaaact acactcatgg tttggaagtt gttaaaaacc tcagagtcgt gaatgataca      4740
     gccgaagtaa aattgataac tgaattcaac aatcttttga ctaaagatga aaagcaatta      4800
     caatacctat tacctgtaat aaaagattat cgaagcttgt tttcagatag caagaaggaa      4860
     acgttgatgc ggcccatatg aatgaatatt ttgtttgaat atacaattag aacatttttg      4920
     tactgttttt taaattttct tcagaatctc gcttcgacag atcgtttttc tttatctcag      4980
     cttataaatt ttcctttatt tttttaaact aataagttta tgtgattcag tagttcaaag      5040
     tataaattag tagaaaatat tacaaatcag ctttttggcc tttttaccgt gatttttgag      5100
     ttttttgatg attttaactc cttttctcga ttgaatcggc aaaagccaat tgcaccattc      5160
     gtttaatgag ctcaaaatac ataaaaatgt atgtttttaa aaaaaacttt ccaacttatc      5220
     actgattata aacgttaaaa gtccattttt acacgttttt tcgagttttt caacgatttt      5280
     ggcttataac ttttttattt cactattacg gcgaaaacta atagcacgat tcgattcagc      5340
     ggctcaaaat acatgggaaa atatacttcc aaagttaaaa ttccaaaatt ttcacaggtt      5400
     ttcagaacga taaacgtttt gacccttttt taacatgaaa tcccataaga aacttcgggt      5460
     gctttgaggc acgtgaaaaa tcgatgctat gggttcaaaa cctatatgcg catggttttt      5520
     gaggtatata gaagctatat ttgcccg                                          5547
//
ID   NAVIMAR1    repbase;    DNA;    INV; 1223 BP.
XX
AC   .
XX
DT   06-NOV-2007 (Rel. 12.11, Created)
DT   06-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; NAVIMAR1.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1223
RA   Jurka J.;
RT   "Mariner DNA transposon from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1170-1170 (2007).
XX
DR   [1] (Consensus)
XX
CC   Highest  identity with consensus:  92-93%.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(187..888,870..1214)
FT                 /product="NAVIMAR1_1p"
FT                 /translation="MEIPEGHFRHILLFYFRKGKTAAQAHRKLCSVYGDEC
FT                 LSERQCQNWFARFRSGNFDLKDEPRPGRPTVEKVDEILEKIEIDRHISSRD
FT                 IAMELNIDHKTVLNHLHKTGYKKKLDTWVPHELTSKNLMDRVSICESLLKR
FT                 NEIEPFLKQIITGDEKWITYDNNVRKRSWLKPGEASQTVAKPVLTRRKVLL
FT                 SVWWDWKGIVHHELLEPGQTINSTVYCQQLMRLQQAIEKKTGQNKKNRPEL
FT                 INRKGVVFHHDNARPHISLMTRQKLREFGWEVLMHPPYSPDLAPSDYHLFR
FT                 SLQNSLNGVKLDSKEACENHLVKFFAQKPQKFYSDGIMVLPEKWQKVIDQN
FT                 GTYIID"
XX
SQ   Sequence 1223 BP; 383 A; 233 C; 271 G; 336 T; 0 other;
     tattgggttg gggaaaaaat aatttcggtt cttcctaata gatggcgtta aagttgtata        60
     tctatagtaa tgcttattca atgaagccac actatagcat gtttagaagt ttaaagtcta       120
     tagaatattc tagagtacaa agtagcgtca ttcgtttact gattcaaaaa ttattgcgct       180
     ttgacaatgg agattccaga aggccacttt cgtcacattt tgcttttcta cttccgaaaa       240
     gggaaaactg cagcgcaggc tcatcgaaaa ttgtgcagtg tttatggtga tgagtgctta       300
     agtgaacgcc agtgtcagaa ttggtttgct cgatttcgtt ccggaaactt cgatcttaaa       360
     gatgaacctc gccctggtcg gccaaccgtt gaaaaagtcg atgaaattct tgaaaaaatc       420
     gagatagacc gacatatttc atctcgcgac atcgctatgg aactaaacat cgaccataaa       480
     acagttttga accatttaca taagactgga tacaaaaaga agctcgatac ttgggttcca       540
     cacgaattaa cgtcaaaaaa tttaatggac cgagtttcca tttgtgaatc cctgctgaaa       600
     cgaaacgaaa tcgagccatt tttgaaacaa ataattacgg gcgatgaaaa atggatcacg       660
     tacgacaata atgtgcgaaa gagatcgtgg ttgaagcccg gagaagcttc acaaacagtt       720
     gcgaagcccg tattgacgcg aaggaaggtg ttgctgagtg tttggtggga ttggaagggt       780
     attgttcatc atgagctgct cgaacctgga caaaccatta attcgactgt ctactgtcaa       840
     caactaatgc gattgcagca ggcgattgaa aaaaaaaccg gccagaattg atcaatagga       900
     aaggcgttgt cttccatcac gacaacgcta gaccgcacat atctttaatg actcgtcaaa       960
     aattgagaga gtttggctgg gaagttttga tgcatccacc gtatagcccg gaccttgccc      1020
     cgtcggacta tcatttgttc cggtctctgc aaaactctct taatggtgta aagctggatt      1080
     caaaagaagc ttgtgaaaat cacttggtta agtttttcgc ccagaaacct cagaagttct      1140
     acagtgacgg aattatggtt ttgccagaaa agtggcaaaa ggtcatcgat cagaacggca      1200
     catatatcat tgattagtgt tca                                              1223
//
ID   NAVIMARN1   repbase;    DNA;    INV; 733 BP.
XX
AC   .
XX
DT   06-NOV-2007 (Rel. 12.11, Created)
DT   06-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   Putative non-autonomous Mariner element - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   NAVIMARN1.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-733
RA   Jurka J.;
RT   "NAVIMARN1: Non-autonomous DNA transposon from Nasonia parasitic
RT   wasp.";
RL   Repbase Reports 7(11), 1173-1173 (2007).
XX
DR   [1] (Consensus)
XX
CC   TSD: TA; ~2000 copies in the genome.
XX
SQ   Sequence 733 BP; 263 A; 98 C; 99 G; 273 T; 0 other;
     cactgagaga actatatatt aaaatttact acatatgtag gaaaaattac tatattagat        60
     agtaacggca ggtcatactc gctccatgac gatttttact atattcatag taaaaattgt       120
     tagacttata ttaaaatttg ttacgtgttt actagaaatt actacattat atagtaaaaa       180
     ttattttaag aatttctccg tgtgccagaa tttgaggtta taaagttgat ttatgcagta       240
     atcagagacc aaaatctata attttttgtt tatctggtat tattaagtga taaaatatca       300
     ttcgctgcta ttatttatta attttggtca atttattatt aatattaact catgagtaaa       360
     tgtgattaat atatcagatt tgaaatttag tacataacag tactgtttgg gtaagtggtc       420
     agcgcgctcg actcccattc cagaggtcca ggttcgattc ccgtcgccgc agaaaaattt       480
     ctttctttcg tttatttctt tcacttaaca acattaaata tcaataataa taataataat       540
     aatcatattc gaataagcgc gtaaaattgg ccagcaaaaa aaaaattaaa tttttaaaaa       600
     tttcatttca gtatagaaat tactatctga gatagtaaaa tttaatacaa agcaagtata       660
     accgtccgtt actatataat atagtaattt ttcctgcata tgtagtaaat tttaatatct       720
     agttttctca gtg                                                          733
//
ID   NAVIRTE1    repbase;    DNA;    INV; 5663 BP.
XX
AC   .
XX
DT   07-NOV-2007 (Rel. 12.11, Created)
DT   08-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   RTE-type element: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; NAVIRTE1.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5663
RA   Jurka J.;
RT   "NAVIRTE1: RTE-type non-LTR retrotransposon.";
RL   Repbase Reports 7(11), 1174-1174 (2007).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2727..4166
FT                 /product="NAVIRTE1_1p"
FT                 /translation="MRAAFDKVNRREMWEMMEKLGLGVRIRNRVKELYRGT
FT                 RSEIRIGEDKIGGFELHKGVRQGCPLSPTLFNVAMADTEKELSKVQEGGIV
FT                 LGKKKFWSISYADDVVMVANNATGLKQMLKKFKKIIERKGLELNTEKSKIM
FT                 VFKNGGRRKKEDSFFWEKKEIEVVKNFEYLGYMLKENGKEEAQIKKLKEKA
FT                 STVMSSMWGLGEELFRDNWELRMRLFDTMVKSVMEYGAEVWGWKGKEELEK
FT                 IQRKYMKWVMKLDRTTPEHVLHLETKRYKLETRTRRRAIKYEVKLSKAKEG
FT                 TLWRECWRTLEKEEEKERRRGXRRXNREEELNKRGWALSEYHRRLRAGEQV
FT                 WSELERIEKDIQWQKWESEMRDSRQARDVKELIKPQGETPEYLRRTGNTGK
FT                 KGLAMTARFRMGNEARGYKYWMKEEERICRLCREEEETFEYIFSRCNRTGS
FT                 RENNWKNILNGERKNLAKLYRVIWVRKEKEKEEEX"
XX
SQ   Sequence 5663 BP; 2530 A; 559 C; 1739 G; 800 T; 35 other;
     agaaaagtaa gaaggaaaga actggagaag aggcagaaga aagaaacgca tttgcaaaag        60
     gagggaatgt gaaaagatca ccaattgaga aagagaagat ggaagaggag gcaatcgggt       120
     cgttaaagtg cactatgaat ataatcctac aaaaagtgga gaagatgagt atgaaaatgg       180
     ataaggaata ggtagaaagg gataagatga tcgagaactg ggaacagaaa tatattggac       240
     tggaggaaaa aatgaacaga aaaatagagg aagggctaaa aggtatggaa ggaagactgt       300
     gagaagaagg agaataaagg aaaagaatta gaagagaatg caaggaggcg agagaaaagg       360
     aggaaagaga gatggaaaga aagaatggga atgagaatgc gaaagaaaag aagaaaaaaa       420
     gaaattgagg agatattagg gaagatagaa agtctggaaa aaggggaaga gatagacaag       480
     ggtagagaga gtcaaccagg ggagagagag gataagggaa aggtaacgga aaaggagagg       540
     gacagaaagc agatagaaga aatggaatgg aggatcgagg aaggagagag gataggaaaa       600
     agaataatat tataatagca gggtggaaag aagaaaaatg ggatagaaag acggtagaag       660
     actggatgaa aaaactcgaa gtataggtta cgttgaggaa aacggtcatt gaacgggaag       720
     atctaaagaa taggggcgga atgtagaaac tgggaagaaa aaggagatat catgagagag       780
     aaggctaggt tacaagggtc tgatatattt atagacaacg atctaacatg gaaagagaga       840
     agaaataaag aaaaactgag agaatacgcg acaaaggaaa gaaaagaagg aaaagaggtc       900
     aagataggat acaacaaact atggataaaa ggcgtagagt atttatggaa ggaaagagaa       960
     caggaatttt ttcggagaaa gaaaaggaca ggagaggaag aaaagagggg agcaaaggaa      1020
     cttaaggata attaattgga atgtagcggg aataaagtga gtagatgaga ggacctgggg      1080
     ctatctaaaa gggtttgatg taatttgtct gcaggaaaca tggctggaag ataaagaagg      1140
     aaatttctgg gaaaagaaat taggaggtta tgaagtcaga attagaaatg caaagaaagg      1200
     gggagaaaga gggagagtga aagggggaat agtgatggcg gtaagacagg gaacgaaaac      1260
     agagagaata gagtggatag aagaaaagac aaacgaattc ataggagcaa gaatattagg      1320
     aaggagagat atatggtgga taggtacggc atacatgaga gaggaaaaac aagaaaactt      1380
     taaggagata gaagggatga cggaaaacgc cagaggtgag aaattgatat ggtgcggaga      1440
     catgaatgca agaacgggat aggaaggagg aggagtcgac gaggaagaaa acgaagagaa      1500
     cagggaatcg aaagatgaaa agataaacag agaaggggaa gaacttctgg aaaaaacaag      1560
     agaaatggga cacagtatat tgaatggaaa taccgaagga gacaaaacag gagaatacac      1620
     gtacatagga ggagcaggat gctcagtgat agattatgtg ataacaaatg agcaaggaaa      1680
     aagagaggta caacgcaata gagatagagc tgggaaaaac actcgggaaa acagatgaag      1740
     agaaagacaa aatcacagaa agagctatat ggactgaaaa agcaataggt caattccgag      1800
     aagaactaaa taaaggggaa gaggaaacag aatggacaga actaaaaaga aaactagaaa      1860
     aagcaatcag aaggaaaaag ggaagcggca gaaaaagaaa gaaaaacacg tggtgggatg      1920
     aaaaatgcag actcagaaag cagaggtaag gaagttaggc aaggcgatta agaagggagc      1980
     gggaaggaaa gaatacgtca aagcaaagag agactgggga atattagtag aaagaaaaaa      2040
     gcaggaagaa atggaaaaaa gaataaaaga ggctggagat agtaaaaccg ggagaaaatt      2100
     ctgggaggtg gtaaaaagta ggagaagaaa aaagaggaca agatgcagca gtaaaataaa      2160
     gaaagaggaa tggttaacty acttcaaagg gcaactagga gaagagacag aggaagattt      2220
     gggaacaagc ayacaaggag aggatgaaga aggagakaga gaggataaag aagraagaat      2280
     aaccgaaaac gaggtgagga aggcaattag aaaaatgaag aagggaaaag cgccaggagc      2340
     agacggacta caaaatgagg tatggataca cggggaggaa caggtaatag gagaaataac      2400
     taaaatactg aataacatat ggaaaggggg aaaagtacca gaggaatgga aaacgggact      2460
     aataaccccg cttttcaaga aagggaagaa ggaggaagca aagaactaca gagggataac      2520
     tctcatggac acagggtata aattatacgc agaaataata agggaaaaga tggaaaggga      2580
     gttagaggga agagagatgc ttgacgatac acaaatgggt ttcagaaaag ggagaaggta      2640
     cggcagacgc aatttatatt ttgagtaaag caatagaaac tgaactggat aagaagggag      2700
     gtaaagtcta cgcgtttttc gcggatatga gagcggcktt tgacaaggtg aatagaagag      2760
     agatgtggga aatgatggag aaactaggrc taggagtcag aataaggaat agagtcaaag      2820
     agttatatag agggacaagg agtgaaatca ggataggrga ggataagata ggagggtttg      2880
     agctacacaa aggggttagg caagggtgcc cgctaagccc gacacttttc aatgtagcaa      2940
     tggcagacac agaaaaagaa ttgagtaagg tacaggaagg agggatagtt ctaggaaaaa      3000
     agaaattctg gtcaatttca tacgcggacg acgtagtgat ggtggcgaac aacgcgacag      3060
     ggctaaagca gatgctaaag aaatttaaga agataataga aaggaaaggg ctagaattga      3120
     acacggaaaa atcaaagata atggtattta aaaatggggg aaggagaaaa aaggaggaya      3180
     gttttttctg ggaaaagaag gagatagagg tagtaaaaaa tttcgaatac ttaggataca      3240
     tgctaaagga aaatgggaaa gaagaggcac aaattaagaa gttaaaggaa aaggcaagca      3300
     cggtaatgag ctcgatgtgg ggattaggag aagaactctt cagagataac tgggaactaa      3360
     ggatgaggtt atttgacacg atggtgaaaa gtgtaatgga atatggtgca gaggtgtggg      3420
     gatggaaagg taaggaagaa ctggagaaga tacagagaaa atatatgaaa tgggtaatga      3480
     aactagacag aaccacgccg gagcacgtac tacatttgga gacaaagagg tacaagctcg      3540
     aaacaaggac gaggagaaga gcaataaaat atgaggtaaa actaagcaag gcaaaggaag      3600
     gcaccctgtg gagggaatgc tggagaacac tagaaaaaga agaggaaaaa gaaaggagaa      3660
     gaggaargag gcgamgtaat agagaagagg agctaaacaa aagaggctgg gcactatcag      3720
     aatatcacag aagactgaga gcaggggagc aggtgtggtc ggagctggaa agaatagaga      3780
     aggacataca atggcagaaa tgggaaagcg aaatgagaga ttcaagacag gcgagagacg      3840
     taaaagaact aataaaacca cagggygaga caccagaata tctgagaaga acaggaaaca      3900
     cagggaaaaa agggctggct atgacagcaa gatttagaat gggcaacgaa gcaagaggct      3960
     acaaatattg gatgaaagag gaagaaagaa tatgcaggtt atgcagagaa gaagaagaga      4020
     ctttcgagta catattttcg agatgcaaca gaacaggtag cagagagaac aactggaaaa      4080
     acattttaaa cggggaaagg aagaatctgg cgaagctata cagagtaata tgggtaagga      4140
     aggaaaagga gaaggaagaa gaaakttaaa agaaaatata atacaaatag agaaaagagc      4200
     aaacgaaaga acgwaaagag caatcgaaag gaaacnagag caatagagaa gaggaaagga      4260
     aaaaacaaay aaggaaagaw agaaagaacc agacgaagga ackaaataga gcgcagggac      4320
     atttagagag caggggagac gacggaacag gaggaacagt ggatgaaaca aaagtcacta      4380
     ggwawggaca agaaaacgat acaggtggar agaggaacgt ggacgagaca gaaaagaaaa      4440
     cacgtggtga gccacagata gaaaagaggt tagtaaagat aaaacaagta gtgaaaggag      4500
     aagataaaaa agtgaaaagg agaagatgta cggagacaag aagaaagaaa gagagatgag      4560
     ggaactgaga gaggaggtrg aaggatggaa gataaaggcg aggtttgaga gagaaaaaag      4620
     agaagccctg gaaaagaaaa tgcaggatgt gagagaggac gtggagtttt taaaggggaa      4680
     gatgaaaaac atgcagaaag agatagatga gatgagagaa gggcttgcag gtaagaaaaa      4740
     tagagtggag acggtaaaga aaaggcagga gatgagaaga gggagaagag taataggaga      4800
     agagagaatt ttgagagaga gaaaggctga tgcggccagt acagatatag gaaaggggac      4860
     agcaggtgca aggtgtggga aagaggcctg atagtacacc taaacaattg gacggaggag      4920
     gattctataa aagactggct ggaggatata atggaaggag tggaatggga gatggaagat      4980
     acaaggacgg aggacacgaa aaaggtaatt tttaagagaa argaagacat ggaattgata      5040
     tgggagaaga gggcggaaat aagagaagga ggcaaaatca ggctggagca gtggctatcm      5100
     ttcgatgaga gaagggccaa agcgctgatt atgagagaga aaaggagaag agaagaggat      5160
     gagatcgagg agggcgaggt ctcgcacaaa aaagaatggg tagctgaaat agaaggcgaa      5220
     ctgtacaagt gggacgaaaa gaaggagaga attgtaaaaa aaggaaaagg gatagaackg      5280
     ggagaagagg rcagatataa gaaatggagg tcgggggagt cagaggagga agaggaagaw      5340
     tatcagacaa agatggagag aaaggaagag tagagtttac tcacaaacac acataaacac      5400
     acacaaacaa tcaaacacac acacacacgt acgacttata cacacgcaca cacacacaca      5460
     tgcacaaacr gacacgaaaa cargaaaagm aggagarcrc acayacacay acacacatrt      5520
     acacasgaac attacctaca gagacacaca taacacacca gattaggtta aagtaggatt      5580
     aaagcaagag gtatgtaaat atacgaatga ataaatattg taaacacgaa tagtgaaata      5640
     caataaagtt attattatta tta                                              5663
//
ID   Neptune-1_FoCa repbase;    DNA;    INV; 3606 BP.
XX
AC   .
XX
DT   05-NOV-2019 (Rel. 24.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 4)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-1_FoCa; Neptune-1_FoCa.
XX
NM   Penelope-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3606
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2743-2743 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.
CC   Renamed from Penelope-1_FoCa.
XX
FH   Key           Location/Qualifiers
FT   CDS           505..3264
FT                 /product="Neptune-1_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MAQSFFYNKFLSSINCYSPPIVELAKNYFSFILKKCR
FT                 LSSHCHFLNACLRKKIIPPGFILKFHPGFIPNSRDKVVINKHLHNASLNLI
FT                 RTSFQHFSSEKDIISSKILSSRNVLRNNSDPNTFGHILDLARHYNSQFYSS
FT                 LRNIKNHKFRKSQSSQSGHNSASTPHSSATIPCHPPINQVVLIPPDIVLSP
FT                 DETSLLCRGLTFSPTPDKSNLFELHQDHEHFYRRLRLLGHFGPHSGSSSPP
FT                 SITQFSESIIDKVIPKKSSWTPPPNQFPDLEYFINSSRKALPSSGYSFQSH
FT                 KSNLSSQELSTIKSLSNRTDIVIRKADKGGSVVVWSRDLYISEANSQLNNT
FT                 NFYCKLDSDPTSSYQKQVSKTIGNFISSGDLPVFAQRLIEKNPRCSVFYLN
FT                 PKIHKYGNPGRPIVSTVCCPTSLISAFVDSVLQPLVANTPTYLKDTTHMLQ
FT                 LLENFIFPVDPASCPTFLVTCDVAQLYTVIPHAGGLTAAKVLFESRSVLDP
FT                 PTHVLIRLLELVLTLNAFEFNSEFFSQISGVAMGTKVGPSYACCFLAHQEF
FT                 LFFARYSGPMPVLYKRFIDDIFMIFQSPDTDVTIFLDAMSTMHPSLKFETT
FT                 ISSSSICFLDLKISIRDHKILTSIYYKPTDSHSYLPYDSCHPKHVLDSIPY
FT                 SQFLRLRRICSDDDDFLTQSFTMSQFFSHRGYPSHLIRRTLEAVKAVSRSS
FT                 LLVPHDKSTKDIVPLVVGYSPNVTTVVQKTKSLFNSILSHNPNFSSKPIVA
FT                 YRRAPNLQQLLVRSKLKPIGDSILQDSTTFGTFPCNRPRCKTCKSVLQQPH
FT                 LKINNFTFKIKSSFSCISSSLIYAISCKRCPDVVYIGQTSRKLADRFREHL
FT                 KSISNNLGTTVCNHFIRNHDIDDIIITALCNAPSDERKRLTLENKIIFLFQ
FT                 SNKPPGLNVNFSFLLK"
XX
SQ   Sequence 3606 BP; 961 A; 959 C; 557 G; 1129 T; 0 other;
     taggaaaaaa tgggaggagg aactcacttt cgtagagttg gtgtccaaat tgtaggccgg        60
     gtgtggttgg gggaggttaa attgccaacg tttcgaactc ttgttctttt tcaaggcggc       120
     ggaggggaag aattttgaga agttgtgact tcacgtgccg aattgtgagt gaggaaggaa       180
     gggtaaaaaa gggtaaagga agaccgttaa cgcgtgcgtt aacggtcttc ctttaccctt       240
     ttttaccctt ccttcctcac tcacaattcg gcacgtgaag tcacaacttc tcaaaattct       300
     tcccctccgc cgccttgaaa aagaacaaga gttcgaaacg ttggcaattt aacctccccc       360
     aaccacaccc ggcctacaat ttggacacca actctacgaa agtgagttcc tcctcccatt       420
     ttttcctatt atttactcac tatgcacatt ctaccaaata tttaacccaa ttttttgtgc       480
     actccttttg aaaaattaat aattatggcc caatcctttt tctacaacaa attcctttcc       540
     tcaattaatt gttattctcc tcctatcgta gaacttgcta agaactattt tagtttcatt       600
     ttaaagaagt gtcgcttatc atctcattgt cattttttaa atgcctgtct acgtaaaaag       660
     ataatcccac ctggtttcat tttgaaattc catcccggct tcattcccaa ctccagggat       720
     aaggttgtca ttaacaaaca ccttcataat gcttctttga atttaatccg tacttcattc       780
     caacattttt ctagtgaaaa ggacattatt tcatccaaaa tactctccag tagaaacgtt       840
     ttaagaaata attcggatcc taatactttc ggccatatcc tagatttagc ccggcattac       900
     aacagtcaat tttactcttc cttgcgtaac attaagaatc ataaattccg taaaagtcaa       960
     tcgtcacaat ccggccataa ttctgcctcc acaccacact cttccgccac aattccctgt      1020
     caccccccca ttaaccaagt tgttttaatc cctcccgaca ttgttctgtc tccagacgaa      1080
     acgtcacttt tatgccgtgg tctaaccttt tctccgaccc ctgataaatc taaccttttc      1140
     gaattgcacc aagaccatga acatttttac cgacgactac gtttattggg ccattttggt      1200
     cctcattctg gttcctcatc ccctccctcc attacacagt tttccgaatc cataatagac      1260
     aaggttattc ctaaaaaaag ctcgtggaca ccccctccaa accaattccc tgatctggaa      1320
     tacttcataa attcctcccg caaagccctc ccatccagcg gatatagttt ccaatcgcat      1380
     aaatctaatc tgtcttctca agaactgtct accattaaat ctttgtccaa ccgtactgac      1440
     attgtcatcc gcaaggctga caaaggtggg tcagtagtag tttggtcccg tgacctatat      1500
     atatctgagg ctaattccca acttaataat acgaattttt attgcaaatt agattctgat      1560
     ccgacttcat cttatcagaa acaagtttct aaaacgattg ggaattttat ctccagtggg      1620
     gatttacctg tttttgccca gcgtttgatt gaaaagaacc cacgttgctc agttttctat      1680
     cttaacccta aaattcacaa gtatggcaac cctggtcgac ctatagtgtc aactgtttgt      1740
     tgccccacct ccctcatttc cgcctttgtc gattcggtct tacaacccct ggtcgcaaat      1800
     actcccacgt atttgaaaga cacgacccat atgttacaac ttttagagaa ttttatattc      1860
     cccgtcgacc ctgcttcttg tcctactttc ttagttacct gtgatgttgc ccagctatat      1920
     acggtcattc ctcacgcagg tggtctgacc gcagcgaaag tcctttttga atctagatcc      1980
     gttcttgatc ccccgactca tgttctaatc cggcttttag aattggtttt gacattaaac      2040
     gcgttcgaat ttaattctga atttttttcc caaatctctg gtgtcgcaat gggcacgaaa      2100
     gtaggcccca gctacgcttg ttgtttttta gcacaccagg aatttttatt ctttgcacgt      2160
     tactctggtc ccatgcccgt tctctataag cgttttatcg acgacatttt tatgattttt      2220
     caatccccgg ataccgatgt caccatcttt ttagacgcga tgtccacaat gcacccatcg      2280
     ttgaaattcg aaaccacaat ttctagctct tcaatttgct tcctcgattt gaagatctct      2340
     attcgtgatc ataaaatcct cacctcaatc tattacaaac ctacggactc acattcctat      2400
     cttccatacg attcgtgtca cccaaaacac gttttggata gcatccctta ctctcaattc      2460
     ctacgactca gacgcatctg tagtgatgac gatgatttcc taacccaaag ctttaccatg      2520
     tcacaatttt tctcccaccg tggttaccca agtcacctta tcaggagaac gcttgaggca      2580
     gtcaaggctg tttctcgtag ctcgctcctt gtccctcatg ataagtccac gaaggacatt      2640
     gtcccattag tcgtcggcta ctcccctaac gtgacaacag tggtacaaaa aaccaaatcc      2700
     ctcttcaatt caattctctc acataatccc aacttttcat ctaaaccaat cgtcgcatac      2760
     agacgagccc caaatttgca acagctttta gtccgttcca aattgaaacc gattggtgac      2820
     tctattctac aagattcaac aactttcggt acctttcctt gtaatagacc acgctgcaaa      2880
     acttgtaaat cagttttgca acaacctcat ctcaaaatca acaatttcac cttcaaaatc      2940
     aaatcttctt tttcctgtat tagttcgtcc ctaatttatg caatctcatg taaaagatgc      3000
     ccggacgtgg tatacatagg gcaaacctct cgtaaattag ctgatcgttt ccgtgaacat      3060
     ttaaaatcta ttagcaataa tcttggtact acggtctgca accacttcat ccgcaatcac      3120
     gatattgatg atatcatcat cactgccctc tgcaacgctc cttctgatga aagaaagcgt      3180
     ttaacacttg aaaataaaat catctttctt ttccagtcca acaagccccc tggcttgaac      3240
     gttaacttca gtttccttct aaaatagttt tttggcaagt tctacatacc ctcagggcgg      3300
     tttgcattgc cgacgggtgt ttgggcgacc ccgaggtacc tgagcctgga ccgttacgca      3360
     cgcgttaacg gtcttccttt accctttttt acccttcctt cctcactcac aattcggcac      3420
     gtgaagtcac aacttctcaa aattcttccc ctccgccgcc ttgaaaaaga acaagagttc      3480
     gaaacgttgg caatttaacc tcccccaacc acacccggcc tacaatttgg acaccaactc      3540
     tacgaaagtg agttcctcct cccatttttt cctattattt actcactatg cacattctac      3600
     caaata                                                                 3606
//
ID   Neptune-43_LMi repbase;    DNA;    INV; 4293 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-43_LMi; Neptune-43_LMi.
XX
NM   Penelope-43_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4293
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3450-3450 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
CC   Renamed from Penelope-43_LMi.
XX
FH   Key           Location/Qualifiers
FT   CDS           1064..3616
FT                 /product="Neptune-43_LMi_1p"
FT                 /translation="MAQASMNHLCSLRKILLMCNPQYINPISQIESLALQQ
FT                 LEEHSRHHLHKLSSLLTSYCRLGAPLANPYPTQSVPPCEPLIAPTPCLADL
FT                 FHLPHPPKLPTNNPQFPKPKQSQNTVVNLSAKTLNPTEVSVLSKGLTFSPT
FT                 PKFNHIGLVKDLSFCRSLQWKNYFATNPSNQSQSNSNIEPCLSQFIPPSNR
FT                 DPPSLPPNHPLVTFQEFLTSNLASPSFPKSLPKNTNLSAEERTALHNLKTD
FT                 PNLIILPADKGSTTVVMNHSDYVTEGLRQLSDSSTYKLCQDDPIPKVQNDL
FT                 QSLLKSYGPSQNLSPESISLLTPTTPRTPTFYMLPKIHKPNNPGRPIVAGY
FT                 CAPTERISALVDQHLQPIVRNLASHIQDTNHFLHRLSTIPTPLPPGSLLVT
FT                 VDATSLYTNIPHAHGLAALEHYLSQRPSDSKPNTSFLITLTNYILTNNYFS
FT                 FEGKVYNQIRSTAMGTRMAPSYANLFMGRLEETFLASQNPKPLVWFRFIDD
FT                 IFMIWTQGQDTLSSFLHNLNSFSPISFTWSFSTRQVTFLDVNLHLTDGSIH
FT                 TSVHIKPTNYQQYLHFDSCHPFHIKKSLPYSLATRGRRICSDEKSLTHYAE
FT                 GLTKAFTDRHYPPDLVRKQISHAISPHTTNPPPNPSNQSQRSVLLVTQYHP
FT                 GLEQLNHILHQGFDYLSSCPEMRDILPKILPTPPKVVFHRPPNLHNILVHP
FT                 YATPNPNPLPQGSYPCGRPRCKTCPIHPPSTSYSSPVTGLSYPIRGRATCE
FT                 SSHVIYQLCCNHCTAFYIGMTTNQLSVRMNGHRQTVAKNKIDHPVAQHAAE
FT                 HSTLDFNGCFTTRAIWILPSTTSSSELRRWELSLQHILRSRNHPGLNLR"
XX
SQ   Sequence 4293 BP; 1034 A; 1410 C; 577 G; 1272 T; 0 other;
     aatttaggtt gtgtgaatgt gatttatttc attctgcagc agctcagagc tctttaagtg        60
     agttgttact atcctccatt attgacattc ctatcggatt ttccattgtt aaaattttgc       120
     caaacggcct tcttctttcc cagaccctgt gttttccttt gttactctct aactttcttt       180
     actcattcct tctttttctt tttcctgttg cttgttcggt atcacaatta acggtcctgt       240
     ccctcacaac agtgctaatt aggcgtattg ttgatgtagc aattattcca tccctgtcat       300
     tcctacatta ctttcgcctt ccttgcatat ttcacctgtt atttattttt atttgtttat       360
     cgaatttccc ttacctcatc taccggtgct acacaatcca ttacgttttt aatcccttcc       420
     atgaatcatt ttccatcatt tccctcgact taataccatt ttacgtagct gtactagttt       480
     gtgctactgt agcgtatcct tgctttttac gtgttttaca tgtatgtgat gtttgaatac       540
     attttccgta ttggtgagca atttgtcgca ttgttacgca ttatggtatt ggtgcgtaat       600
     tttcgttagt tcgtcgtttt acgaaaagat acgtgatttt gactgttagt tcgtagtttt       660
     tcgtactggt gtgtaatttt tcgtactagt gcataatttt gtgtattggt gcgtgattct       720
     gcaaattttt tgcgtatttt cacgtgtcct ttctagctat ccagcacccc tccctacctc       780
     ctaacgcctt catccgccta tttctccatc atatcccgtt ttccaacaac atccctgctc       840
     catctttctg caccagttca gaagagtttc cctgtccttg gccaaaaccc agtcccacat       900
     tctatttctc caatcctgcc taaaccatgg aatccctccc aatggcctaa ccattaaaat       960
     tcctttctct ggatcccatc cctcctttca caatgacctt caccttttca gattccacca      1020
     atccttgtcc ctcacacacc tagtactcca aaaacacatc tccatggcac aggcatccat      1080
     gaaccacctc tgctccctcc gaaagatatt gctaatgtgc aatccccagt acataaatcc      1140
     catatcccaa attgaatccc ttgcactcca gcagttggag gagcattcca gacaccacct      1200
     tcataaatta tccagcctgc tgacatccta ctgccgcctt ggagcaccac ttgccaaccc      1260
     ctatcccacc caaagtgttc ctccctgtga acccctcata gcacctacac cttgcctcgc      1320
     agaccttttc cacttgccac atcccccaaa actccccacc aacaatccac aattcccaaa      1380
     gcctaaacaa tcccagaata ctgttgttaa cctttctgct aaaaccctca accccacaga      1440
     agtttctgtc ctatccaaag gtctcacctt cagccccaca cccaaattta accacattgg      1500
     acttgtcaaa gacctctcct tctgccgatc cctacagtgg aaaaactact ttgccaccaa      1560
     tccttcgaat caaagccaat ctaattccaa cattgaaccc tgcctctccc aattcatacc      1620
     accatccaac cgtgaccctc cctcactccc ccctaaccac cctctggtca cattccagga      1680
     attcctcaca tccaacttgg catcaccatc cttccccaag tcccttccta agaacaccaa      1740
     cctttcggca gaagaaagga cagccttaca caacctcaaa acagatccca acctaatcat      1800
     cctccctgca gacaagggtt ccaccactgt tgtaatgaat cacagtgatt atgtgacaga      1860
     aggcctacgt caattgtctg attcctccac ctacaagttg tgccaggacg accccatccc      1920
     aaaagtccaa aatgacctac aatccctgct aaaatcttat ggcccttccc agaacctctc      1980
     ccccgaatcc atctccctcc tcaccccgac aacaccccgc acacctacat tttacatgct      2040
     cccaaaaatc cataaaccta acaatcctgg acgcccaatt gtggctggtt actgtgctcc      2100
     cacagaaaga atttcagccc ttgttgacca gcacctccaa ccaattgttc gaaacctagc      2160
     ctcccacatc caagatacca accacttcct tcacagactc tccaccatcc ccaccccttt      2220
     acctcctgga tccttactcg tcactgttga tgccacttcg ctgtacacca atatcccaca      2280
     tgcccatggt cttgctgctc tcgaacacta cctttctcaa cgtccttcag actccaagcc      2340
     caatacctca ttccttataa cccttaccaa ttacatccta acaaacaatt acttttcctt      2400
     tgaaggaaaa gtatacaatc aaatccgcag cacagccatg ggcacccgta tggcaccctc      2460
     ctatgccaac ctatttatgg gccgtctaga ggaaaccttc ctagcttccc aaaaccccaa      2520
     acccctggtc tggttcaggt tcattgatga tattttcatg atttggactc agggccagga      2580
     caccctatcc tcgttccttc acaacctcaa ttccttctcc cccatcagtt tcacttggtc      2640
     cttctcaacc cggcaagtca ccttcctgga tgttaacctc cacctcactg acggctccat      2700
     ccacacctcc gtccacatta aacctactaa ttaccaacag tacctgcact ttgatagctg      2760
     ccatccattc cacatcaaaa aatccctccc atacagcctt gccacccgtg gacggcgaat      2820
     ttgcagtgat gagaagtccc ttacccatta tgccgaaggc ctcacaaagg ccttcacaga      2880
     cagacattac cctcctgacc tagtccgcaa acagatttcc catgccatat ccccacacac      2940
     caccaatcct ccccccaacc ccagtaacca gtcacaacgg agtgtcctcc ttgtcaccca      3000
     ataccacccc ggactggaac aacttaatca catccttcat cagggctttg attatctgtc      3060
     atcatgccct gaaatgagag acatcctacc caagatcctt ccgacccctc ctaaagtggt      3120
     gttccatcgc ccacccaacc tccacaacat cctagtccat ccctatgcca ctcccaaccc      3180
     caacccctta ccacagggat catatccctg tggaagaccc cgatgcaaaa cctgcccaat      3240
     ccacccaccc agcacttcct attccagtcc cgtcacaggc ttatcctacc ccatcagagg      3300
     tcgggccacc tgtgaaagca gccatgtgat ataccaactc tgctgcaatc attgcacagc      3360
     gttttatatc ggtatgacga caaaccagct gtccgtcaga atgaatggcc accgccaaac      3420
     tgtggcaaaa aacaagatag accaccctgt ggcacagcat gcagctgagc acagcactct      3480
     ggatttcaat ggctgcttca ctacccgagc catctggatc ctcccctcca ccaccagctc      3540
     ttctgaactg cgcagatggg agttgtccct tcaacacatt ctacggtccc gcaaccatcc      3600
     tggcctcaac ctaagataac ttcccatccc tgcaccctat gcctaacatc tccccccccc      3660
     tccttccttc cccacccatt atcctgtatc tcatgtcttc cttacaactg tgtgtcacca      3720
     cttacaatat ccccttaatt tattactttt atttttactt attttttttt attttttcct      3780
     atttttccta actttatttt ttcctttttc ccaactttat ttttcctatt tttatttttc      3840
     cttattattc attattctta tcatttcaaa tccccccact ccctccccac actcctctac      3900
     acctcccttt tatcctttcc cgccccttcc cttcactgta ttcattgccg caattcaaat      3960
     tcccgcctat cagagccttt aaaatccatc atgcaatgcg gaactttcca tccccacctt      4020
     tacccagcat ccttccccct ccactcccca cctcactcac agtctagctt gtgttgctgg      4080
     agtggccgga catgatagtt gtgtgtgtat agttgtctga gtgattgcgt gaatgtatgt      4140
     gtttcttttt ctgatgaagg ccatggccga aaatttaagt tgtgtgaatg tgattatcta      4200
     ttttcgtgtc tgtcagcagc tcagcgagcc tctttacggt gagttgttac ctatcctcca      4260
     ttattgatat tcctatcgga ttttccattg tta                                   4293
//
ID   Neptune-44B_LMi repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Penelope-44B_LMi; Neptune-44B_LMi.
XX
NM   Penelope-44B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-493
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3451-3451 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-end is not recovered.
CC   Renamed from Penelope-44B_LMi.
XX
SQ   Sequence 493 BP; 139 A; 81 C; 89 G; 182 T; 2 other;
     aacaggacca tgcctagtaa agcactgtgg tgttcaaacc aatcttcgga ttgttgactg        60
     ctttaccttt ttttacatta aaaaaaaaac tttctgggga aataaatgtt cttaacattc       120
     accaccagga ttaggtagca tcgcatctcg aaaatgttgc aaatatttat tttaaatttg       180
     tcaaaataat ataaacgttt atttcagtaa tgtttccatt ttttgtttat aactcagtac       240
     cttaacttca ataataattt ataatatcta ataaataaaa atgaatgagg tgatggttgt       300
     atgactgtgt tgtgtgcctg tgtgattgcg tgagtgctct atttctgaag aaggccatgg       360
     ccgatagctg aatgtgttgt atgtgtgtgt cttttgtatg tgcctgtcgc akctcgtcgc       420
     cacgtctttg cggtgagtwg taaactgtcc tcactatatt atttattcca acctggactt       480
     tccattatta tat                                                          493
//
ID   Neptune-44_LMi repbase;    DNA;    INV; 4569 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-44_LMi; Neptune-44_LMi.
XX
NM   Penelope-44_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4569
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3452-3452 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
CC   Renamed from Penelope-44_LMi.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1234..3483,3378..4022)
FT                 /product="Neptune-44_LMi_1p"
FT                 /translation="MDPCSIYLYQFRKVSLSLAKTQSHILFLKCCLSHGIP
FT                 PNGLTLKIPLSGSHPSFHNDLHLFRFHQSLSLTNLVLQNHLSMAHKSLSYL
FT                 LSLRKILLLCNQNYLHPISQIESFALQQLEEHSKHHLHKLSSLLTSYCRLG
FT                 APISNPYPTHSVPPREPLIAPRPCLADLLNLPHPSKLPTTTPQHPIPKQPQ
FT                 NTVVNLSTKNLNPTEVSVLSKGLTFSPTPQFNHVGLVKDLLSFSRSLRWKH
FT                 YFATNPSDRNLPNPNIEPCLSQFIPPSNKDPPALPPNHPLVTLQEFLTSNL
FT                 SSPSFPKSLPKNSNLSAEERRAIQNLKTNPDIIILPADKGSTTVVMDHSDY
FT                 LAEGLRQLSDSSTYKLCRIDPIPKVQQDLQSLLKSYGPSQKLSPESISLLT
FT                 PAAPRTPTFYMLPKIHKPNNPGRPIVAGYCAPTERISALVDQHLQPIVQNL
FT                 SSHIKDTNHFLHRLSTIPTPLPPGSLLVTVDATSLYTNIPHAHGLAALEHY
FT                 LSQRPSELKPDTSFLITLTNFILLNNYFSFEGKVYHQIQGTAMGTRMAPSY
FT                 ANLFMGRLEESFLASQNLKPLAWFRFIDDIFMIWTQGQDTLSSFLQNLNSF
FT                 SPIHFTWSSSTYHATFLDVNLHLTDGSIHTSVHIKPTNHQQYLHFDSCHPF
FT                 HIKKSLPYSLATRGRHICSDKNSLSEYAEGLTKAFTDRNYPTDLVRKQISR
FT                 AISSHIPNPPPNTSNHPQKSAPLVTQYYPGLEQLNSSFAKVLIFYPRAQKP
FT                 STKERSPCHPVLPWTRTTKFILRQGFDFLSSCPEMRDILPKILPTPPKVVF
FT                 RRPPNLHNILVHPYATPKPSSLPQGSYPCGRPRCKTCPIHPPSTSYSSPVT
FT                 GLSYPIRGRATCESSHVIYQLCCKHCAAFYIGMTTNQLSIRMNGHRQTVAK
FT                 NKVDHPVAQHAAEHMLDFNGCFTTRAIWILPSTTSFSELHRWELSLQYILR
FT                 SRNQPGLNLR"
XX
SQ   Sequence 4569 BP; 1044 A; 1502 C; 714 G; 1309 T; 0 other;
     tttctcccct cgcgcctccc cactccattc ctaagctgca tctcgttatt cccatctaac        60
     ccaccccacc accgtgacgt aaccttccta tcccctctcc ctcccctccg tccccgattc       120
     gccgcagagc gtgattcgaa gtgcggcagc cggaggtgat ggttgtatga ctgtgttgtg       180
     tgcctgtgtg attgcgtgag tgttctattt tctgaagaag gccatggccg atagctgaaa       240
     gtgttgtatg tgtgtgtctt ttgtatgtgc ctgtcgcagc tcgtcgccac gtctttgcgg       300
     tgagttgtaa actgtcctta ctatattatt aattccaacc tggactttcc attattatat       360
     tttgcctaac ggtctccctt ccatcccata acctcatgat tcctttgtta ctgctttcta       420
     aaacattcct ctatcaatat ttccttctct cttgtatttt ccttcttctc aatcctttgt       480
     aactgtcaca ttccgacttc cgagccaaca atcccgccgg ctttcaacag agggctttat       540
     aaccacgccg attgttgatg cagcttactc ctcccccttc cagttattct aatacacctt       600
     tccttactct ccctcttgta ttttcacgta gttttggtca tctgtatata cattttattt       660
     tatatttttt tatcacttta aatcatttat taacgagcca acaattccaa aaccagtttc       720
     gtttgaacta acgggcccgc ccacggatat gcacatgtaa tcattatccc cagtccctta       780
     tattcttctc ctctggcact ataatattgg aattacgtaa atttacgtta ctgtgtcttg       840
     agttttctgt tctagaagct ccattatagt ctttgttctg catttctcgc acgaatttcc       900
     gtacttacgc gttgtttacg tttttgtacg catttttgcg gtgggctgct tgctcatgtg       960
     tgagatctcc cgttctagtg cgtgatattg cgttctggtg catgatttta tgcgtgattt      1020
     tgcggttttt tccgtcattt tgcgcgcctg ggcgtgaatc tgcgtgcttg ggtgtgtatc      1080
     tgtgtacttg tgtgggcgaa tttccgaact tttgcgtgcc tggtgcgtat tttgcgtgtt      1140
     gaggaacctc ttcccaggcc ttaggctcat cataatccac tgtctctccc atcattcctc      1200
     attttccact ttccctgcac catccctgcc ccaatggacc cctgctccat ctatctgtac      1260
     cagttcagga aagtatccct ttccctggcc aaaacccaat cccacatcct attcctaaaa      1320
     tgctgcctaa gtcatggtat ccctcccaac ggtctaacct taaaaattcc attgtctgga      1380
     tcccacccct ccttccacaa tgacctgcac cttttcagat tccaccaatc cttatccctc      1440
     acgaacctag tcctacaaaa tcacctctcc atggctcata aatcccttag ctaccttctc      1500
     tccctccgta agatattact attgtgtaac caaaactacc tacatcccat ctcccagatc      1560
     gaatcctttg ctctccagca actggaggag cattccaaac accacctcca caaactgtcc      1620
     agcctgctga catcatattg ccgccttgga gcacccatat ccaatcctta tccgacccac      1680
     agtgttcctc ctcgtgaacc cctcatagct cccagaccat gcttagctga cctcttgaac      1740
     ctacctcatc cctccaaact ccctaccacc actccacaac atccaatacc aaaacaaccc      1800
     cagaacactg tggtcaacct atccacaaaa aacctaaacc ccactgaagt ttccgtttta      1860
     tccaaaggtc ttacctttag tcctacaccc cagttcaatc atgttggtct tgtcaaagac      1920
     ctactctcct tttcccgatc cctacgatgg aaacactact ttgccaccaa tccctctgac      1980
     cgtaacctac ctaatcccaa tattgaaccc tgcctgtccc aattcatacc accatccaac      2040
     aaagatcccc ctgcactccc acctaaccac cctctggtta ccctccaaga gtttctcacc      2100
     tccaacttgt cctcaccatc ctttcccaag tcccttccca agaactcaaa cctttcagca      2160
     gaagaaagaa gagccatcca aaaccttaaa actaatcctg acataatcat cctccctgca      2220
     gataaaggtt ccaccactgt agttatggat cacagtgact acctggcaga agggctccgc      2280
     caactctctg actcctccac ctacaagttg tgccggattg accccatccc caaagtccaa      2340
     caagatctcc aatccctact aaaatcctat ggcccctccc agaaactctc ccctgaatcc      2400
     atctccctcc tcaccccagc agcaccccgc acacccacct tctacatgct ccccaaaatc      2460
     cacaaaccta ataatcctgg acgccctatt gtggctggtt actgtgctcc taccgaacga      2520
     atttcagccc tagttgacca acacctccaa ccaattgtcc aaaatctatc ttcccacatc      2580
     aaggatacca accacttcct tcaccgactc tccaccattc ccaccccttt gcctcctgga      2640
     tccttacttg tcacagtgga tgccacctcc ctatacacca acatcccaca tgcccatggc      2700
     cttgccgctc tggaacacta cctctcccaa cgtccctctg aactcaagcc tgatacctca      2760
     ttcctcataa ccctcaccaa tttcatccta cttaacaact acttttcctt tgaggggaaa      2820
     gtttaccatc aaatccaagg cacagccatg ggcacccgca tggcaccctc ctatgccaac      2880
     ctgtttatgg gccgtctgga ggaatccttc ctagcatccc aaaacctcaa acctctggcc      2940
     tggttcaggt tcattgatga tattttcatg atctggactc agggccagga caccctatcc      3000
     tcctttcttc agaacctcaa ttccttctcc cccatccact tcacctggtc ttcctcaacc      3060
     taccatgcca cattcctgga tgtcaacctc cacctcactg atggctccat ccacacttcc      3120
     gtccatatta aacctaccaa ccaccaacag tacctacact ttgacagttg ccatcccttc      3180
     cacatcaaaa aatccctccc ttacagcctg gccacccgtg gacggcatat ctgcagtgac      3240
     aagaactccc tttctgaata tgctgaaggt ctcacaaagg ccttcacaga cagaaactac      3300
     cccacagacc tagtccgcaa acagatctcc cgtgccatat cctcacacat cccaaatcct      3360
     cctcctaaca ccagtaacca tccacaaaag agcgctcccc ttgtcaccca gtactaccct      3420
     ggactcgaac aactaaattc atccttcgcc aaggttttga ttttctatcc tcgtgcccag      3480
     aaatgagaga catcctgccc aagatccttc ccacccctcc taaagtggtg ttccgtcgcc      3540
     ctcccaacct ccacaacatc ctagttcatc cttatgccac cccgaaaccc agctcactgc      3600
     cacagggatc atatccttgt ggaagacccc gctgcaagac ctgtccaatc cacccaccca      3660
     gcacttccta ttccagtcct gtcacaggct tatcctaccc tatcagaggc cgggccacct      3720
     gtgaaagcag ccacgtaatt taccaactgt gctgcaaaca ctgtgcagct ttctatattg      3780
     gcatgaccac caaccagcta tccattagga tgaatggcca ccgccaaact gtggccaaaa      3840
     acaaggtgga ccaccctgtg gcacagcatg cagcggagca catgcttgat ttcaatggct      3900
     gcttcacaac ccgggccatc tggatcctcc catccaccac cagcttttct gaactgcaca      3960
     gatgggagtt atccctacaa tacattctcc gatcccgaaa tcaaccaggc ctcaacctac      4020
     gataacttcc ctattttttt ctccatacct tacagttcct acctctctat cccaaacctc      4080
     acctattttg agtggtgtgt gaatgtgcga tcgtgtgtgt gtgtgtgtgt gtgtgtgtgt      4140
     gtgtgtgtgc ggtcttgtgt acttgcagtg tgcacgcatt ttgtatatat atttatttta      4200
     ttttattttc tcccctcacc cgcctcccca ctccattcct aagctgcatc tcgttattcc      4260
     catctaaccc atccccacca ccgtgacgta accttcctat cccctctccc ctcccctccc      4320
     gtccccgatt cgccgcagag cgtgattcga agtgcggcag ccggaggtga tggttgtatg      4380
     actgtgttgt gtgcctgtgt gattgcgtga gtgttctatt ttctgaagaa ggccatggcc      4440
     gatagctgaa agtgttgtat gtgtgtgtct tttgtatgtg cctgtcgcag ctcgtcgcca      4500
     cgtctttgcg gtgagttgta aactgtcctt actatattat taattccaac ctggactttc      4560
     cattattat                                                              4569
//
ID   Neptune-47_LMi repbase;    DNA;    INV; 3100 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 4)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-47_LMi; Neptune-47_LMi.
XX
NM   Penelope-47_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3100
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3455-3455 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
CC   Renamed from Penelope-47_LMi.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(49..2187,2120..2659)
FT                 /product="Neptune-47_LMi_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="PPPVQISSIHSTHQPNPTKPSKPGPNSLAAPHLHRKI
FT                 LLLCNPKYLHPIPQTDVLALQVLEQHSHTTSKKLSNLFTSYSRLGLPLSTP
FT                 STTSRHTPQPLIADKPCLADLLHLPHPQKLPHTTTQNPQPKQTVMNLSSKS
FT                 LSPIEVSVLSKGLTFCPTPKFNHAGLVKDLLSFSQSLQWKHHFATNPTIQT
FT                 HTNTNIEPCLTQFTPPSSQDPPTLPPNHPLLTFQNFLTSNLASPSFPKSLK
FT                 MDTNLTPSERNAIYHLKTDPDLMILPADKGSTTVVLDRKDYVAEGLRQLSD
FT                 SSTYTPCHNDPIPKTQQDLQSLLKSLGPSQDLSPESISLLTPPTPRTPTFY
FT                 MLPKVHKPNHPGRPIVAGYGAPTERISALVDQHLQPITHNLPSYIKDTNHF
FT                 LHRLSTVPVPLPPGTMLVTVDATSLYTNIPNAHGLAAVEHYLSQCPTDCKP
FT                 TTSFLVTLTNYILTRNYFSFEGITYKQICGTAMGTRMAPSYANLFMGHLEE
FT                 SFLTTQNPKPLIWFRFIDDIFIIWTEGEDTLSTFLQNLNTFSSIHFTWSYS
FT                 TQRATFLDVDLFLKDGLISTSVHIKPTNHQQYLHFDSCHPFHTKKSLPYSL
FT                 ATRGRRICSDKQSLSKYAKRLTEAFTDRNYPPNLVQKQISRALSVQSPSSS
FT                 PTPTVRPQRSTPLVTQYHPGLEQLNQVLRQGFDYLSSCPEMRNTLPNILPT
FT                 PSYSGIPPPTKPTEIPYQISSPPPPTVVFRRPPNLRNILVHPYSIPAPNPL
FT                 PHGSYPCNRPRCKTCPIHHPTTTYSSPVTGISYPIKGRATCESSHVIYKLS
FT                 CNHCAAFYVGMTSTQLSIRMNGHRQTVARRQLDHPVAEHAALHSVTHFNDC
FT                 YTACAIWILPTNTSFSELRRWELSLQYILHSRNPPGLNLR"
XX
SQ   Sequence 3100 BP; 774 A; 1155 C; 432 G; 739 T; 0 other;
     aaccattaaa ttacccattt caggctgtaa tccctccctc cacaatgacc tccacctgtt        60
     cagatttcat caatccatag cactcaccaa cctaatccta caaaaccatc aaaaccaggc       120
     ccaaacagcc ttgcagcacc tcacctccat cgaaaaattc tccttctctg caaccccaaa       180
     tacctgcatc ccatccccca gaccgatgtc cttgccctcc aagtgctaga gcagcattca       240
     cacaccacct caaaaaaact ctctaacctt ttcacctcct actcccgcct tgggttacca       300
     ttatccaccc cttcaacaac ctccagacat accccacagc ccctcatagc cgacaaacct       360
     tgcctagcag accttttaca tttaccacac cctcagaaac tcccccacac aaccacacaa       420
     aatccacaac ctaaacagac agtcatgaac ctctcctcaa aaagcctcag tcccattgaa       480
     gtgtcagtcc tttccaaagg cctaaccttt tgccccactc ccaaattcaa tcatgccggc       540
     cttgttaagg atcttctctc cttctcccaa tccttacaat ggaaacacca ttttgccacc       600
     aaccccacca ttcagacaca taccaatacc aatattgaac cctgcctgac ccagttcact       660
     cctccatcca gtcaagatcc acccacactg cccccaaatc atccccttct cacttttcag       720
     aatttcctaa catctaacct ggcctcacca tctttcccca aatccctcaa aatggatacc       780
     aatctcacac cctcagaaag aaatgctatt taccacctca aaactgatcc tgaccttatg       840
     atcctacctg ctgacaaagg ctccaccact gtggttttag accgcaagga ctatgtcgca       900
     gaaggtctcc gccaactgtc tgattcttcc acctacacac cctgccacaa tgatcccatc       960
     ccaaaaaccc aacaggatct ccagtccctc ctcaaatcct taggaccatc ccaagacctc      1020
     tccccagagt caatctctct cctcacccct cctacacccc gcacccccac cttctacatg      1080
     ctccctaaag ttcacaaacc caaccaccct ggacgtccca ttgtggccgg ttatggtgct      1140
     cccactgaga gaatctctgc tctcgtggac caacaccttc agcctattac ccacaaccta      1200
     ccctcctata taaaagatac caaccatttc ctccaccgac tctccacagt tcctgttcct      1260
     ttaccacctg gtaccatgct tgtcacagtt gatgccacct ccctctacac caacatcccc      1320
     aatgctcatg gccttgccgc tgttgaacac tacctttcac aatgtcctac cgactgcaag      1380
     cccacaacct ccttcttagt taccttgacc aactacatcc tcacccgcaa ttacttctcc      1440
     tttgaaggca taacctacaa acaaatttgc ggtacagcca tgggcacccg tatggcaccc      1500
     tcctatgcca acctgttcat gggccatcta gaggaatcct tcctgactac ccagaatccc      1560
     aaacccctca tctggttcag attcattgat gatatcttca taatctggac tgaaggtgag      1620
     gacacactat ccacattcct tcaaaacctc aacaccttct cctccattca cttcacctgg      1680
     tcctactcaa cccaacgagc caccttcctc gacgttgacc tgttcctcaa agatggcctt      1740
     atcagtacct ccgtccacat caaacctacc aaccatcaac aatacctcca ttttgacagc      1800
     tgccacccat tccacaccaa aaagtccctt ccatacagcc tagccacccg tggtcgtcgc      1860
     atctgcagtg acaagcagtc cctctccaaa tatgccaaac gcctcactga ggccttcact      1920
     gaccgcaatt accctccaaa ccttgtccag aaacagatct cacgggccct gtctgtccag      1980
     tcaccctcca gctcccccac acccaccgtc cggccacaaa ggagcacccc tcttgtgacc      2040
     cagtatcacc caggactgga gcagttaaac caagttctcc gccagggttt cgactacctt      2100
     tcatcctgcc ctgaaatgag aaatacccta ccaaatatcc tccccacccc ctcctacagt      2160
     ggtattccgc cgcccaccaa acctacgtaa tatccttgtc catccctact ccatccctgc      2220
     tcccaacccc ttaccccatg gctcataccc ctgcaataga cctagatgca aaacctgtcc      2280
     tatccaccat cccaccacca cctactccag tcctgtcact ggcatttcct atcccataaa      2340
     aggcagggca acctgtgaaa gcagtcatgt tatctacaaa ctgagctgca accactgtgc      2400
     agctttctat gtgggcatga ccagcaccca gctatctatc cgaatgaatg gccatcgtca      2460
     aactgtggcc aggagacagc tagaccatcc tgttgcagag catgcagcgc tgcatagtgt      2520
     gactcacttc aatgactgct acacagcctg tgccatatgg atcctcccca caaacaccag      2580
     cttttctgaa ttgcgcagat gggaactctc cctacaatat atcctacact cccgcaatcc      2640
     cccaggccta aaccttcgct agttcctgcc tctaccaccc ttcccttcct ctccctgcca      2700
     ctctctatcc ttacattcgt ctcccatccc gccacacatt tcattccctt cccttccttt      2760
     tccgcactgt ccgtcagaca gcactggcgt attcccccac ccatgccaca catccccccc      2820
     ccctcctctc ctgcttccct ctccttgcca cctcctcacc cccaccactg gttgctctcg      2880
     cctaggatgc catgctgggt agcgcagatc ggccacagcg gccggagacg gcggtcgtgt      2940
     cgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtctcta acgacgaagg cctaaaggcc      3000
     gaaagctata atgttgttgt ctgttatttg tgcctttctg cggctcatcg gacatctctg      3060
     tggtgagtaa gcaacctatc cttctcaaaa atattgttga                            3100
//
ID   Neptune-4_FoCa repbase;    DNA;    INV; 3125 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 4)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-4_FoCa; Neptune-4_FoCa.
XX
NM   Penelope-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3125
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2737-2737 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   Renamed from Penelope-4_FoCa.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..2809
FT                 /product="Neptune-4_FoCa_1p"
FT                 /note="GIY-YIG endonuclease."
FT                 /translation="MATQSQIFNKFLCSINSYPFSIIELAKSYFNLLLKKC
FT                 RLSSHIQFLRRCFSKKVIPIGFQLKFSPGFVPTANEKHLXGKCLRNASFSL
FT                 IDLTLQHSIEQNIVLSSQIYDSRGNLRRHASPSTYGRIVDLARYFNNRYFN
FT                 XLLSRKXSKFNKXCPPSPXSPXLTPAPNFSSDKAVVTIPSDLXISPDEKSL
FT                 LXRGLSFSPTPEKSNLFDLHRDHEXFFRRLRLXXYFGXSSSNSSPDSSLSN
FT                 SELIINSVAPKKSXWTPPPNQIPELEYFINTCRAALPDNGSLFKSKHSNLS
FT                 SNELSAIXSLTSRNDIVIRKADKGGSVVVWSRDLYIAEALSQLSNSSFYCK
FT                 LDHDPTPIYQKQVSKTVGDYVGSGELPLIAQRLIEKSPRCSQFYLLPKIHK
FT                 VGNPGRPIVSTVSCPTSLISAFVDSVLHPIIAQTPSYLKDTTDLLCFLKDF
FT                 SFPLDPHNNSTFLVTSDVTQLYTVIPHADGLTAAKFFFDSRPENDPPSHVL
FT                 IRLLELVLTLNAFEFNSEFYSQTSGVAMGTKVGPSYACSFLAYQEKLFFEI
FT                 YVGPLPLVYKRFIDDILMFFQATESEIHTFLNAFSVWHPSLKYDNNMSPTS
FT                 VSFLDLTLSIDSFRIKTSIFYKPTDSHSYLPYNSCHPKHILDSIPFSQFLR
FT                 LKRICSDDNDFFTQSSKMLQFFLNRSYPAELLHNALNKVTNLSRDHLLTPN
FT                 NKSAGEVLPLVVGYSPQITSVVTKTKSLFNSILSRNXNFPSKPIXAYRRAP
FT                 NLQNLLVRSKLQPIRDPISNVTNFGTFPCNRPRCKTCTHVLKRPSLKIKTI
FT                 NFEIKSLFTCTSSCLIYAITCNKCLDVIYIGQTLRKLADRFREHLLSIRND
FT                 SHTTVSDHFVHNHSENDIMITALVNAPSDEKARLTLENKIIFHFKANKPPG
FT                 LNVNFSFLLK"
XX
SQ   Sequence 3125 BP; 793 A; 795 C; 459 G; 1046 T; 32 other;
     cactcgcaca ttttaccaac tattatcctc aatttttgtg catccctttt tccmaaattt        60
     ctcgacaatg gccacccaat cccaaatatt caataaattc ctctgttcaa ttaactccta       120
     ccctttctcc attattgaac tcgcaaagtc ctactttaat ttgcttttaa agaaatgtcg       180
     tctctcctct catattcaat ttttacgtcg ttgtttttct aaaaaagtca ttccaattgg       240
     gtttcaacta aaatttagtc ccggtttcgt tcctactgcg aatgaaaaac acctgttmgg       300
     taaatgttta cgtaatgcgt ctttttcttt aattgatttg actctacaac attcaattga       360
     gcaaaatatc gtactctctt cacaaattta tgactctcgt ggtaatttga ggagacatgc       420
     ctcaccaagc acttatggta gaattgtaga tcttgcccgg tattttaata atcgktattt       480
     taatkttctw ttgagcagga aggastccaa gtttaacaaa mtttgccctc cwagcccamc       540
     ttcmccmmtt ttgacacccg cccccaattt ttcatccgat aaagcsgtcg tsactattcc       600
     ctccgattta wttatttcsc cagatgagaa atctttgctt astcgtggwc tcagtttctc       660
     tccgacccct gagaagtcca atttatttga tttgcacagg gaccatgaac wttttttccg       720
     ccgcctgcgc cttcakkgtt attttggtwc ttcctcctcc aactcgtccc ctgattctag       780
     tctgtcmaac tctgaattaa twattaattc ggtcgccccm aaaaagagtk cctggacccc       840
     tcctccaaat cagatccctg aattagaata ttttattaat acttgtcggg ctgcccttcc       900
     cgacaacggt tcccttttca aatctaaaca ttctaacctc tcatccaacg aactctcagc       960
     cattaawagt cttacttccc gtaacgacat tgtcatccga aaagcggaca agggtggctc      1020
     agtagtcgtt tggtcacgtg acctatacat agctgaggct ctctcccaac ttagtaattc      1080
     ttcattttat tgtaaacttg accacgatcc aactcccatt tatcaaaaac aagtgtctaa      1140
     aacagtcggt gattatgttg gtagtggtga gcttccccta atagctcaac gtttgattga      1200
     aaagtcccct cgctgttccc aattttattt actacctaaa atccacaaag ttggtaaccc      1260
     cggtcggcca atcgtgtcga cagtttcatg tcccacttct ttaatttcag ctttcgttga      1320
     ctccgtttta catcccatta tcgcgcaaac cccgtcgtat cttaaggaca cgacggattt      1380
     gctgtgtttt ctgaaagatt tttccttccc ccttgaccca cataataact caactttcct      1440
     tgttacttcg gatgtgaccc agctttacac ggtcattccc catgctgatg gcctgacagc      1500
     cgccaaattc ttttttgact cccgacctga aaacgatccc ccttcccacg ttttgatacg      1560
     tttattagaa ttagtcctca ctttaaatgc tttcgagttc aattcagaat tttactccca      1620
     aacttccggc gtggctatgg gcacgaaagt tggtccaagc tatgcatgtt cttttcttgc      1680
     gtatcaggag aaattattct ttgaaattta tgttggtccc cttccccttg tatacaaacg      1740
     ctttattgac gatattttaa tgttctttca agccactgaa agcgaaattc atactttttt      1800
     aaatgctttc tcagtttggc acccctcctt aaaatatgac aacaatatgt ccccgacctc      1860
     tgtttccttc cttgatctta cacttagcat tgattcattt agaatcaaaa cctcaatttt      1920
     ttataagccc actgattccc attcatatct tccgtacaac tcgtgtcatc ccaaacacat      1980
     tctagatagt attccctttt cacagtttct acgattaaaa cgcatctgta gcgatgataa      2040
     cgattttttt acccaaagtt ctaaaatgct ccaatttttt ctaaatcgta gttatccagc      2100
     cgagctttta cataatgccc taaataaggt cacaaacttg tcccgagatc atttattgac      2160
     ccctaataat aaatctgctg gcgaggtctt accgttggtt gttggctatt ctcctcaaat      2220
     tacttctgtg gttacaaaaa ctaaatcgtt attcaattca attctttccc gtaataamaa      2280
     tttcccatct aaacctattk ttgcttatcg ccgtgcccct aatttgcaaa accttctcgt      2340
     acgatccaag ttacaaccwa ttcgtgaccc aatcagcaac gttactaatt ttggcacttt      2400
     cccgtgcaat cgcccacggt gtaaaacctg cactcatgtc cttaaacgtc cctctttaaa      2460
     aattaaaacg attaattttg aaattaagtc tctttttact tgtactagct cctgcctaat      2520
     ttacgctatc acttgtaaca aatgccttga tgtaatatat attggtcaga ctcttcgtaa      2580
     actggccgat cgctttcgtg aacatttgct wtctattcgt aatgattctc acactactgt      2640
     ttccgatcac tttgtccata atcacagtga gaatgatatc atgatcactg ctttggtaaa      2700
     cgcaccctca gatgagaagg ctcgcctgac acttgagaat aaaatcattt ttcatttcaa      2760
     ggccaacaaa cctcctggtt tgaatgtcaa ttttagtttt cttttaaagt aatctttgtg      2820
     agttcaatat accctcaggg cggtttttaa ttgccgacgg gtgtctgggc gaccccgagg      2880
     tacctgagcc tagactgcta cgcccacgtg gtctggcagt cttcctttcm atccttccta      2940
     tccccattcc ttcacactca cattggttct tcccgtgagc agtcaccaaa aattctccct      3000
     ccggtcctga agaagaacga aggttcgaaa cgttgaccat tggcctttaa atccggattc      3060
     tacagtttac agtgagtctc atcctcgtcc ttactcctta ttatactcac tcgcacattt      3120
     tacca                                                                  3125
//
ID   Neptune-52B_LMi repbase;    DNA;    INV; 591 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-52B_LMi; Neptune-52B_LMi.
XX
NM   Penelope-52B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-591
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3460-3460 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
CC   Renamed from Penelope-52B_LMi.
XX
SQ   Sequence 591 BP; 112 A; 149 C; 119 G; 211 T; 0 other;
     gtgggaagta tccagataac ccggacggtg tagcactgtg ccaagatgtg ctggccatgc        60
     accaaggcat gtttagccac agggtgatcc tcgttaccaa caaacactgt ctgcctgtga       120
     ccgttcatgc gaatggacag tttgaattcc cacccaccat cttaacatct ttgccttggt       180
     tctctggaca gagcctctgc ctcaagtggc atctctgtct aacttctaac ttctttgctt       240
     tctacagttc tacagtatgt ctgcctaagt gtacttgtgt ctgtgtaaat gtgtgggtgt       300
     atgtgcattt atttaccttc cattttttcc cccaaggtaa gtctttcctg tcccgggatt       360
     ggaatggctc cttaccccct tccttaaaac cctcatcatt tccttttccc tctccttccc       420
     ttctgcctga tgaagcagct aggctgcgaa agctagcatt tgtgtgtgtg tgtgtgtctg       480
     tgtgtttatt tgttgctatt actgcctgtg ccccttcgcc tggtaagtgt acttcatcta       540
     ttttttacgt atatttttcc tgttaggaat ttttcctcta taatattcgt a                591
//
ID   Neptune-52_LMi repbase;    DNA;    INV; 3699 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 19.12, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-52_LMi; Neptune-52_LMi.
XX
NM   Penelope-52_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3699
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3461-3461 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
CC   Renamed from Penelope-52_LMi.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(303..1910,1667..3283)
FT                 /product="Neptune-52_LMi_1p"
FT                 /translation="QLKVTTVSTTNFKTFYFLSFFNLNYCHVHSLPICSLQ
FT                 PVIAHISHFSFIHILCPHPYNNPIQFYVHSLRKHAFSLARLRSHILFTQAC
FT                 LTFGITPKGLTLKVPISGCNPSFHPALYQFQTEQSIALTRLILNLHINSAN
FT                 EHTCQLLSLIKILNLSSPTSTPAVQNILLQANRKLEQHATHHLKKLSNLLV
FT                 THLRKGNTLSLNNLSNKPQPPLIAHKPSLSHLLNLPLPTPLPPKPQNSNPH
FT                 NPEPQHPNSVVNLSSKPLSQSETSVLSKGLTFSPTPKFNQTALVKDLLSYT
FT                 RSLCWRYHFATKKNNPTPNDPAPQDIIQIEPCLEQFRPPSQRDPPALPQNH
FT                 PLQTFQEFLTSNLASQSFLRNLNPTPNITAAESRAIRDLKADHSIVILPAD
FT                 KGSTTVVLDRREYVAEGLRQLSDSTTYKVCQGNPIPDVQAELQGILRTLGP
FT                 LQNLSPDSINLMTPPTPRTPTFYLLPKIHKPNHPGRPIVAGYQAPTERISA
FT                 YIDQHLQPIMCSLPSFIKDTNHFLDRLKSLPSLLPPKPSLPHDPTDTPHPH
FT                 LLPTSQDSQTQSSRPPHCGRLPSPYRTNLCLHRPTPSTHHVQSPILHQRHQ
FT                 PLPRSPEILTQPVTSETILVTIDATSLYTNIPHAQGLAAMEYFLSRRPPTS
FT                 LPKTSFLNTLASFILTHNFFTFEGQTYQQLKGTAMGTRMAPSYANLFMGRL
FT                 EEAFLDTQACQPKVWYRFIDDIFMIWTHSEEELQNFLFNLNSFGPIKFTWS
FT                 YSKSHATFLDVDLHLSNGQLHTSVHIKPTNKQQYLHYDSCHPFHIKRSLPY
FT                 SLGLRGKRVCSSPESLNQYTNNLITAFTSRSYPPDLVQKQIARATSSSPQI
FT                 QNLQQKNPRSAPLVTGYFPGLERTLNVALQQGYDFLKSCPEMRSILHDILP
FT                 TPPRVSFRRPPNLRNLLVHPYEIPKPPSLPSGSYPCNRPRCKTCPMHPSTT
FT                 TYSSPVTRKVYTIKGRATCDSTHVIYQLTCLHCEAFYVGMTSNKLSIRMNG
FT                 HRQTVFVGNEDHPVAKHALVHGQHILAQCYTVRVIWILPTDTNLSELRRWE
FT                 LALQHILSSRCPPGLNLR"
XX
SQ   Sequence 3699 BP; 911 A; 1248 C; 521 G; 1018 T; 1 other;
     tggccgctca tccattttct ttaaactcac aagtttctat attgtttata acattttcgg        60
     catttcttag tactcgcgat tgtttccatc ccgtttttcc acatttccgt tcgtgttcta       120
     cttttctatt tcttcgttgg ttttgattcc ttcctactgt cagcctcaaa atctaatctg       180
     ctaccacata accaatcatg acttttcctc atttcagcgt tttctcgtat ttttccgatt       240
     tcaccatctt aaaccctttt gcacgccata ccacacctaa cccttggata ctacgttgtt       300
     gacaactaaa ggtgaccaca gtatcaacaa caaactttaa aactttctat ttcctttctt       360
     ttttcaacct gaattactgt cacgttcatt ccctccctat ttgttcattg cagcctgtta       420
     tagcccatat ttctcacttt tccttcatcc atatattatg cccccatccc tacaacaacc       480
     ccatccagtt ttatgtacat tccctccgta aacatgcttt ctccctagcc agattacgct       540
     cccacattct ttttactcag gcttgtctga catttggcat cactcccaag ggcctcacac       600
     taaaagttcc catctctggc tgtaacccat cctttcatcc cgccctatac caattccaaa       660
     ctgaacaatc catagccctc acccgcctaa tccttaacct acacatcaac tccgccaatg       720
     aacacacctg tcaactccta tccctaatca aaatcctcaa cctttcctct cccacatcca       780
     cacctgcagt tcagaacatc ctccttcagg ccaaccgcaa attagaacag catgccaccc       840
     accacctcaa aaaactatcc aatctcctgg tcacccacct ccggaaaggc aatactctct       900
     ccctcaacaa cctctccaat aaacctcaac ctcctcttat tgcacacaaa cccagtctct       960
     cccatctact caatctccca ctcccaactc ctctcccccc caaacctcaa aattccaatc      1020
     cacacaatcc ggaaccacaa catcccaatt cagtagtcaa cctctcctct aaacctctct      1080
     cccaatctga aacctctgtc ctatccaaag gcctcacctt tagccccact cccaaattca      1140
     accaaacagc ccttgtcaaa gatttactat cctatactcg tagtctttgc tggagatatc      1200
     actttgccac gaagaaaaat aatcctactc ctaatgatcc agctccccaa gacatcattc      1260
     aaattgaacc ctgcctggaa cagttccgtc ctccatcaca gcgagaccca cctgctcttc      1320
     ctcaaaatca ccctcttcaa accttccagg aattccttac ttccaacctt gcctctcagt      1380
     ctttcctgag aaaccttaat cctactccca acattaccgc agctgaatcc cgagctatcc      1440
     gtgatctgaa ggctgaccat tccatcgtca ttctcccagc cgacaaggga tccacgaccg      1500
     tggtacttga tcggcgggag tatgtggctg agggactgcg tcagctttca gatagtacca      1560
     catacaaagt ctgtcaaggc aatcccattc ctgatgtcca ggcagagctt caaggaatcc      1620
     tcagaacctt aggcccccta caaaaccttt cacctgactc cattaacctc atgaccccac      1680
     cgacaccccg cacccccacc ttctacctac ttcccaagat tcacaaaccc aatcatcccg      1740
     gccgccccat tgtggccggt taccaagccc ctacagaacg aatctctgcc tacatagacc      1800
     aacaccttca acccatcatg tgcagtctcc catccttcat caaagacacc aaccacttcc      1860
     tcgatcgcct gaaatcctta cccagcctgt tacctccgaa accatccttg taaccattga      1920
     tgccacttcc ttatacacaa atatcccaca tgcccagggc ctcgctgcga tggagtattt      1980
     cctttcacgc cgaccaccca cttccctacc taaaacctct ttccttaata ccctagccag      2040
     cttcatccta acccacaact tcttcacttt tgagggccag acataccaac aactaaaggg      2100
     aacagccatg ggaaccagga tggccccctc gtacgcaaac ttatttatgg gacgcttaga      2160
     ggaagccttc ctggataccc aagcctgtca acccaaagtt tggtatagat tcattgatga      2220
     catcttcatg atctggactc acagtgaaga agaactccag aatttcctct tcaacctcaa      2280
     ctcctttggt cccatcaaat tcacctggtc ctattccaaa tcccatgcca ctttcctcga      2340
     tgtcgacctc catctgtcca acggccaact tcacacatcc gtccacatca aacctaccaa      2400
     taaacaacag tacctgcatt atgacagctg ccatccattc cacatcaaac gttcccttcc      2460
     ctacagctta ggtcttcgtg gcaaacgagt ctgctccagt cccgaatccc tgaaccagta      2520
     caccaataac ctaataacag ctttcacatc ccgcagctat cctcctgatc tggtacagaa      2580
     gcaaattgcc agagccactt cctcatcccc ccaaatccag aaccttcaac agaagaaccc      2640
     cagaagtgcc cctcttgtca ccggatactt tccgggactg gagcggactc tgaatgtggc      2700
     tctccagcaa ggatacgact tccttaaatc ctgccccgaa atgagatcca tccttcatga      2760
     catccttccc actccaccga gagtgtcttt ccgccgccca cctaacctcc gtaacctcct      2820
     agtccatccc tatgaaatcc ccaaaccacc ttccctacct tctggctcct acccttgtaa      2880
     ccgcccccgt tgtaaaacct gccctatgca cccttccacc accacttact ccagtcccgt      2940
     aacccggaag gtgtacacga tcaagggcag agccacttgc gatagcaccc acgtgattta      3000
     ccaactgaca tgcctgcact gtgaagcgtt ctatgtggga atgaccagca acaaactgtc      3060
     cattcgcatg aatggtcaca ggcagacagt gtttgttggt aatgaggatc accctgtggc      3120
     taaacatgcc ttggtgcacg gccagcacat cttggcacag tgttacaccg tccgggttat      3180
     ctggatactt cccaccgaca ccaatctttc agaactccgg agatgggaac ttgcccttca      3240
     gcatattctc tcttcccgtt gcccacctgg tctcaacctc cgctaaattc aaattcccgc      3300
     ccaccatctt taacatcttt gcctcggttc tctggacaga gcctctgcct caagtggtat      3360
     ctctgtccaa cttctttgct ttctacagta tgtctgccta ggtgtgtttg cgtctgtgta      3420
     tgtgtgggtg tgtgtgtatt tgtttacctt cctttttttc ccccaaggta agtctttcct      3480
     ctcccgggat tggaatgact ccttacccac tcccttaaaa ccctcatcmt tcccttttcc      3540
     ctctcctttc cctcttctgc ctgaagaagc aactagcggt tgcgaaagct tgtatgtgtg      3600
     tgtgtgtgtg attttatttg tttctgtcga cgagcctgtc cttttggtaa gtcatctctt      3660
     ttctattttt tatatatgtt tatcccacca ggaatttcc                             3699
//
ID   Neptune-58_LMi repbase;    DNA;    INV; 4247 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   16-DEC-2021 (Rel. 26.12, Last updated, Version 5)
XX
DE   Penelope-like retrotransposon, consensus.
XX
KW   Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element;
KW   Penelope-58_LMi; Neptune-58_LMi.
XX
NM   Penelope-58_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4201
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 227-227 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
CC   Rename from Penelope-58_LMi.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(925..1260,1264..3744,3737..4021)
FT                 /product="Neptune-58_LMi_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MYPNPIPQYLQSFRKHAFAIAKLQSHILFLQSCLSFG
FT                 TIPKGLTLKVPISGCNPCFHHSLLQFQIQQSLALTRLVLQQYVASCNHHSQ
FT                 QLLSLSLPKYFSSQHLAQITHLDPYNKPTVNLNCMPHNTLENYPTYWSIIS
FT                 EVVSLFPSSTTTHHNTTLKTPPLIGNKPSLASLLNLPIPAHTPPRTYHNRH
FT                 HMQTPPNTNSNSVLNLSSKSLSIPEISVLSKGLTFCPTPKFNHTALVKDLL
FT                 SFTRNLNWKYHFSTQSQPPGSRAAVEPCLEQFRPPSQKDPPALPQNHPLQA
FT                 FQEFLTSSIASQSFLNNIPTTPNISPAESKAIRELKADRSIVILPADKGST
FT                 TVVLDRGEYVAEGLRQLSDTSTYKPVPHDPIPSVQAELQKILKTLGPSQGL
FT                 TTASIELLSPPEPRTPTFYLLPKIHKENHPGRPIVAGFKAPTERVSALVDQ
FT                 HLQPITCRLPSYIKDTNHFLECLKSIPMPLPPESFLVTIDATSLYTNIPHT
FT                 HGLSALEHYLSQRPPESLPKTSFLVTLANFILTHNYFTFEGQTYKQIRGTA
FT                 MGTRMAPSYANLFMGRMEEAFLKTQKLHPLVWYRFIDDIFVVWTHGEETLL
FT                 NFLHDLNSFSNLKFTWSFSKTQATFLDVDLHLAESHIHTSVHIKPTNKQQY
FT                 LHFDSCHPFHIKRSLPYSLGIRGKCICSSNESLTTYNNNLSNAFLSRNYPT
FT                 DLVHKQISRAVHSSPSNNNVPNPRPPRSTPLVTQYHPGLECLNKFLRQGYD
FT                 FLKSCPEMRSSLQTVLPTPPRVAFRRPPNLRNILVQPYNIPKPPSLPNGSY
FT                 PCNRSRCKTCPMHPPTTTYSSPTTGKTYPIQGRATCETTHVIYQLTCVHCA
FT                 AFYVGMTTNKLAERMNGHRRTVRLGDTQYPVAEHALQHDSRDLGTCYTTRA
FT                 IWILPTNTNPSELRRWELALQHILSSRHPPGLNLRIYANPSPSSILSSPIH
FT                 YPFLPPPLSLSLCVCVPSFPVNKNVLDNPPPLLHPSASFSSLIFSSLYCLI
FT                 FPLWLYISSLAGSVLHAVSLTPHPTPSS"
XX
SQ   Sequence 4247 BP; 1066 A; 1417 C; 576 G; 1186 T; 2 other;
     atcttcatga cctaggtcgt gaactacctt tcccttccgt tcccatcctt tcctcttccc        60
     ttctctccca cctgaacaag atgtgttccg aaagcttgtc ctctttgtca cccctccttc       120
     ttcattgtta ctggagcaca aaggtaagcg gccccttctc gttcatcttg aggagaattt       180
     cgaatattac cttgtggcta catccttctt attgttttaa ctatctttat ctgtttgctt       240
     tcatttatat ctgtcgtctg aactctccta tctcgccatt gttgtctata ttccttctgt       300
     taacgtctta aattaactac cctcccatat atagcctaca attgtgccat tttacgccca       360
     catcctttta tttactcatt tactaaatag cttttaaaga gacgtctccc ttactggaga       420
     ttgttgcaac aatccaacat tgtggcattg tttacaaatg tttttaaaat tatttcaacc       480
     ataatcccag cgactttttc gttaagacta atcaataacg gcgtttttgg ttgtttatca       540
     gcggtttgac cataaatttt gcgccgctgg taagttttaa ggtgccgccg gtgatcttta       600
     atggaccatt aataaacttt tatgtgccgc tagcgatcat ttatctgccg ccaaaaaccc       660
     ttttttcggc cctctatgat cwtttttcac cggcacttgg taattacatt ttcgtagaaa       720
     tctttcgttg aacttttaat attcattttt attttccaaa aaattttcga aaatttttca       780
     ccctattatt catctaaact aaattaaatt ttcttccatt ccgcccctcc tcacacacga       840
     ggacccaacc accacccctt tgtgtgtgtg tgtgtgtatg tgtataattt atttattatt       900
     wttttttcaa accaattatc caccatgtat cccaacccta taccacagta ccttcagtct       960
     ttccgcaaac atgcatttgc tatagccaaa ctgcagtccc acattctttt cctccagtcc      1020
     tgtttgtcat ttggaacaat ccccaaagga ctcactttaa aagttcccat ctctgggtgt      1080
     aatccttgtt tccatcactc cctcctacag tttcaaattc agcagtcctt agctctcacc      1140
     cgtcttgtcc tccaacagta tgttgcctcg tgtaaccacc actcccaaca gctcctctct      1200
     ctctctctcc caaaatactt ctcctctcag cacctggctc aaataacaca cttggatcca      1260
     taatacaaca agccaactgt aaacttgaac tgtatgccac acaacacctt agaaaactat      1320
     ccaacctact ggtccatcat ctcagaagtg gtatccctct tcccatcatc cacaaccacc      1380
     caccacaaca ccaccctcaa aaccccccca ctcattggca acaaaccaag cctggcttcc      1440
     ctactgaatc ttccaatccc agcacacacc ccacccagaa cctatcacaa ccgtcaccac      1500
     atgcagacac cacccaatac caattccaat tcagtcctta acctctcatc caaatccctc      1560
     tccattccag aaatatctgt cctgtctaaa ggcttaacct tctgtcctac acctaaattt      1620
     aatcacactg ccctggtcaa ggatctcctc tcgttcaccc gtaacctcaa ctggaaatac      1680
     cacttcagca cccagtcaca acccccaggc agcagagccg ctgttgaacc ctgtcttgaa      1740
     caattccgac ctccctccca aaaagatcct cctgctcttc ctcaaaacca tcccttgcag      1800
     gcattccagg aattcctcac atccagcatt gcttcccaat ccttcctgaa caacatacca      1860
     accactccta acatcagccc agctgaatcc aaagccatcc gagagctgaa agcagaccgc      1920
     tccattgtaa ttctcccagc ggacaagggt tccacaactg tggtacttga tcgaggggag      1980
     tatgtggcag aagggctgcg tcaactctcg gacacctcta cctacaaacc tgttcctcat      2040
     gaccccattc cctcagtcca ggctgaacta cagaaaatcc ttaaaaccct aggtccctca      2100
     caaggtctca ccactgcctc catagaactt ctctctccac ctgaacctcg caccccgacc      2160
     ttctacctac tccctaaaat ccataaagag aatcatcctg gccgtcccat cgtagcaggc      2220
     ttcaaagctc caacagaacg tgtctcagct ctggtagacc aacacctcca acctataacc      2280
     tgcaggctcc catcctatat caaagacaca aaccactttc tggaatgcct caaatccatc      2340
     cctatgcccc tcccacctga aagcttcctt gtcaccatag atgctacatc cctctacacc      2400
     aacatccccc acacccatgg tctatcagcc ctggaacact atctttccca acgcccacct      2460
     gaaagcctcc caaaaacctc attccttgtc acacttgcta atttcatcct cacccataat      2520
     tacttcacct ttgagggcca gacctacaaa caaatcaggg ggacagctat gggtaccagg      2580
     atggcccctt cctatgccaa cctcttcatg ggccgcatgg aagaggcatt ccttaagaca      2640
     cagaagttgc accccctggt ttggtataga ttcatagatg atatctttgt ggtctggact      2700
     catggtgaag aaacccttct gaacttcctt cacgacctta actccttctc caacctaaaa      2760
     ttcacctggt ccttctctaa aactcaagcc accttccttg atgttgacct tcaccttgcc      2820
     gagtcccaca tccacacctc agtccatatt aaacccacaa acaagcaaca gtacctccac      2880
     tttgacagct gccatccctt ccatattaaa cgatcccttc cctacagcct gggcatccgt      2940
     gggaaatgta tctgctccag taacgaatcc ctcaccacct acaacaacaa tctatccaat      3000
     gctttcctct cccgcaacta ccctacagac ctcgtccaca agcagatctc ccgagctgtc      3060
     cattcctctc cttccaacaa caatgttcct aaccccagac cacccagaag caccccctta      3120
     gtcacccagt accatcctgg cctggaatgc ctcaacaaat tcctccgaca gggctatgac      3180
     tttctcaagt catgccctga gatgagatca tcactccaaa ctgttcttcc cacaccaccc      3240
     agagtagcct tccgccgtcc tcccaacctc cgcaacatcc tcgtccaacc ttacaacatc      3300
     ccaaaaccac cctccctacc taatggttcc tacccctgca accgatcccg ctgcaaaacc      3360
     tgtccaatgc atcctcccac taccacatac tccagcccca ccacaggaaa aacctaccct      3420
     attcaaggca gggccacatg cgagacaaca cacgtcatat atcaactgac atgtgtccac      3480
     tgtgcagcct tttatgttgg tatgactacc aacaaattgg ctgagcggat gaatggtcac      3540
     agacggactg ttcgcctggg ggacacccaa tatcctgtgg cagagcatgc cctccagcat      3600
     gactccaggg accttggcac gtgttacacc acacgtgcca tttggatact accaactaac      3660
     accaatccct cagagctacg gaggtgggaa cttgccctcc aacatatcct ctcctcccgc      3720
     cacccccctg gcctaaatct acgctaaccc ctccccctcc tccatcctca gctcacctat      3780
     ccattatccc ttcttacccc cccctctctc cctctctctg tgtgtgtgtg ttccatcttt      3840
     ccctgttaat aaaaacgttt tagacaaccc cccgcccctc ctacacccct cagcatcatt      3900
     cagttcactc atcttctctt ctctttactg cttgatcttt cctctttggt tatatatatc      3960
     ctctctggct ggctcagtac tacatgcagt atctctgact ccacatccaa caccatcctc      4020
     atgacctagg tcgtgaatta cctttccctt ccttcccatc ctttcttctt cccttctctc      4080
     ccacctgaag aaggaactgt gttccgaaag cttgtccttt tgtccccttt ttttcttttc      4140
     ttcatttgtg tactatcggc ggtacagcac aaaggtaagt actggccagc catctatctc      4200
     gtttcaacaa tatttatcat ctctgaggag aattttcatc attaatc                    4247
//
ID   nhat-10_Hmel repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-503
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 503 BP; 170 A; 73 C; 83 G; 177 T; 0 other;
     gaccagggtt tcttaaacta tgggtcgcga ccccaaaagg ggtcgcgtag caaaattctg        60
     gggtcgcgag agattgaaga gagatgttga agaggtctta cgtccagcag tttcaaacat       120
     tccaccaaga tttgatttgt tatgcaataa aaaacaggcg catccatctc attaaatttc       180
     ttacttatat tttaatttaa tacttaccac gcaactactt gaatatattc gagcgaatta       240
     agacggtcag aatccacttt tatttttgaa actataataa ataaaatttt ataatttttt       300
     gtgcaatttt taattttaga tttttgtatg tttcaaaacg aattctaaaa ctatatattt       360
     tcatatgtat atgtatattg ttacctaata aataaatcat caaaaaatat taatttattt       420
     ttcttttata tttgtatggg gggtcgttaa gaaactcgca atcataaatg gggtcgtgaa       480
     tgacaaaagt ttaagaagcc ctg                                               503
//
ID   nhat-1_Hmel repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-177
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 177 BP; 42 A; 41 C; 55 G; 39 T; 0 other;
     cagtggcgta gtgagggagg gtcagggggg tcatcatgcc ccgggcgccg ctcataaagg        60
     ggcgccaaat agtccgcaaa actatttaaa catacatatg aaattatatt gtgttcgcct       120
     ggggggcgct gtaaaagtat tttgccccgg gcgcgagtta agctcgctac gccactg          177
//
ID   nhat-2a_Hmel repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-2a_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1637
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1637 BP; 670 A; 220 C; 210 G; 535 T; 2 other;
     gggtcataat cagaaaagtg gacattttcg aattcgtaac gtaactgata agtaacaaca        60
     ctgataaagt ttgttacgaa actgatgaca taaggcatta tacacaacaa aataacgata       120
     ttatatgaat aaaactattg ttttttttat ttaatgagac acagatcaaa attttaaagg       180
     ttcaatcgtt gaattaacag attataaatg taagaagaaa acataacaaa gtgagaatat       240
     taacaatata ataatgctag ttcgtaacgt aataaactta tatttctagt tagagatcac       300
     aaagttaatg ataaaattaa attcacttta aaatatatca aaatttgagt cgttatcatt       360
     ggaattaagt ttaattcttt gtaagtgttt attccgcata tcttcatatt taataggatt       420
     ggtcttttta agacgttctc tatatctaaa aaaaaargca tttgtttcag catttgacat       480
     aggagcttac gcttactgaa aatacaaaaa tatatatcaa aaaataataa tcacaaaatc       540
     acaactaatt tcagaaagaa taaaaataaa ttttaactaa atcggttcag ctgtttctga       600
     gattagcgtg cacaaacaca tagacaaaca agcaaacaag caaaaaactt aaaaatcatt       660
     atttttggtt actttacgtt atgaaaagtc actaatagtt tttttcatat gccagcaatt       720
     tttttttctt atatacatat cttccatata caagcaccgg ttcgataaaa ttttattata       780
     aacatatata agaaaacatt ggtaccgtaa ttgtgaacta ggcttcatat tttctcagtt       840
     tcgttacgta acgaaatata acgaaattga gaatgaagtc tgagaaattc taaccttttt       900
     aaatatttgc tcataagcca cgtgttgcat gtgcaagcac tgahgttctt ttttgagatt       960
     ttgtaaaaag aagcaaataa cataaacaag aaaacgaaat tatagaatac ttaccaaaat      1020
     aaaagccgtt tataaccctg agatgtaatt ttacgcattc cctttaaaac atttgaaccc      1080
     ctcaactgca gcgagaacac tactggttgt agctacgaca gcattgactt ttagaataat      1140
     ggtgccacaa taaaaactaa tattaaatac catccaaaat aattgcgttc atattttaat      1200
     tgtacgttac tagccctgag taacaaaaag acaatatttt gggacaaatt tagttaatta      1260
     atatatatta tttattaaat aatgtatcaa taaaagtagt tctatttaat attatgcata      1320
     aagtaaagta atataaacat atctgaaatc aaataaaacc ataaatattc gtaacaaatc      1380
     aatttttaaa aagtaaagtg gtgaatggga cacgaaaaat tgtatggaag cattttgaaa      1440
     agttttttgc aactaacaaa aaatactatt aaaagcctta atacatttaa aatattacaa      1500
     aaatctttaa gttaataagt aaatttatct taaatggcaa aatatttaaa ttatctttaa      1560
     aattgtattt ttaaaacgca ttcaaagtag cgggacaaga aaagacacaa aatgtgcact      1620
     ttttctgatt atgaccc                                                     1637
//
ID   nhat-2b_Hmel repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-2b_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1630
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1630 BP; 658 A; 235 C; 206 G; 530 T; 1 other;
     gggtcataat cagaaaagtg gacattttcg aattcgtaac gtaactgata agtaacaaca        60
     ctgataaagt ttgttacgaa actgatgaca taaggcatta tacacaacaa aataacgata       120
     ttatatgaat aaaactattg ttttttttat ttaatgagac acagattaaa attttaaaga       180
     ttcaatcgtt gaattaacag attataaatg taagaagaaa acataacaaa ctgacaatat       240
     gaacaatata ataatgctag ttagtaacgt aataaactta tatttctagt tagagatcac       300
     aaagttaatg ataaaattaa attcacttta aaatatatca aaatttgagt cgttatcact       360
     ggaattaagt ttaattcttt gtaagtgttt attccgcata tcttcatatt taataggatt       420
     ggtcttttta agacgttctc tatatctttt atgtatttca gcacttgaca taggagccat       480
     gacgcttact gaaaatacaa aaatatttat caaaaaataa taatcacaaa atcacaacta       540
     atttcaggca gaataaaaaa tatttttaac taaatcggtt cagctgtttc tgagattagc       600
     gtgcacaaac acatagacaa acaagcaaac aagcaaaaaa cttaaaaatc attatttttg       660
     gttactttac tttatgaaaa gtcactaata gtttttttca tatgccagca attttttttt       720
     cttatataca tatcttccat atacaagcac cggttcgata caattttatt ataaacatat       780
     ataagaaaac attggtaccg taattgtgaa ctaggcttca tattttctca atttcgttac       840
     gtaacgaaat ataacgaaat tgagaatgaa atctgagaaa ttctaaccct tttaaatatt       900
     tgctcataag ccacgtgttg catctgcaag cactgahgtt cttttttgag attttgtaaa       960
     aagaagcaaa taacataaac aagaaaacga aattatagaa tacttaccaa aataaaagcc      1020
     gtttataacc ctgagatgta atttcacgca ttccctctaa aacatttgaa cccctctact      1080
     gctgcgagaa cactactggt tgtagctacg acagcattga cttttagaat tatggtgcca      1140
     caacaaaaac taatattaaa caccatccaa aataattgcg ttcataattt aattgtacgt      1200
     tactagccct gagtaacaaa aagacaatat tttgggacaa atttacttaa ctaatatata      1260
     ttgtttatta aataatgtat caataaaagt agttctattt aatattatgc ataaagtaaa      1320
     gtaatataaa catatctgaa atcaaataaa accataaaca ttcgtaacaa atcaattctt      1380
     aaaaagtaaa gtggtgaatg ggacacgaaa aattgtatgg aagcattttg aaaggttttt      1440
     tgcaactaac aacaaatact attatttgcc ataatacatt taaaatatta caaaaatctt      1500
     taagttaata aataaattta tcgtaaatgg caaaatattt aaattatctt taaaattgta      1560
     tttttaaaac gcattcaaag tagcgggaca agaaaagaca caaaaaggac actttttctg      1620
     attatgaccc                                                             1630
//
ID   nhat-2c_Hmel repbase;    DNA;    INV; 1705 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-2c_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1705
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1705 BP; 676 A; 231 C; 211 G; 562 T; 25 other;
     gggtcataat cagaaaagtg gacattttcg aattcgtaac gtaactgata agtaacaaca        60
     ctgataatgt ttgttacgaa actgatgaya taaggcatta tacacaacaa aataagrata       120
     ttataygaat aaaactaytg ttgtttttat ttaatgagac acaaattaaa attttaaaga       180
     ttcaatcgtt gaattaacag attataaatg taagaaaaca taacaaagtg acaatattaa       240
     caatataata atgctagttc gtaacgtaat aaacttatat ttctagttag agatcacaaa       300
     gttaatgata aaattaaatc cactttaaaa tatatcaaaa tttgagtcgt tatcackgga       360
     attaagttta attctttgta agtgtttatt ccgcatatct tcatatttaa taggattggt       420
     ctktttaaga cgttctctat atcttttatg tgtttcagca tttgacatag gagccatgac       480
     gcttactgaa aataaaaaaa tatttatcaa tagrtattta ataatatttt atgtttattg       540
     tttagatctt taacaacgct agtacagaac gtatttgttt ttaaataaaa gcytcacccr       600
     cttgamctac atatttatta attcactatc tccagagaaa aaaatagtaa ttacaaaatc       660
     acaactaatt tcaggaagaa taaaaaaatg tttttaacta aatcggttaa gccgtttctg       720
     agataagcgt gcacaaacac attagacaaa caagcaaaca ggcaaaaaac ttaaaaatca       780
     ttatttttgg ttactttacg ttatcaaaag tcaccaatta tttttttcat atgccagcaa       840
     ttttttttta tatacatatc ttccgatggt aacgtaatta tgaactaggc ttcatatttt       900
     ctcagtttcg ttacgtaacg aaatataacr maattgagaa traagtctga gaaattctaa       960
     cctttttaaa tatttgctca taagccacgt gttgcatgtg caagcactga agttcttttt      1020
     tgagattttg taaaaagaag caaataacat aaacaagaaa acgaaattat agaatactta      1080
     ccaaaataaa agccgtttat aaccctgaga tgtaatttya cgcattccct ctaaaacatt      1140
     tgaacccctc aactgctgcg agaacactac tkgttgtagc tacgacagca ttgactttta      1200
     gaatwatggt gccacaataa aaactaatat taaayaccat ycaaaataat tgcgttcata      1260
     wtttaattgt acgttactag ccctgagtaa caaaaaagac aatattttgg gacaaattta      1320
     cttaattmat atatattatt tattaaataa trtatcaata aaagtasttc tatttaatat      1380
     tatgcataaa gtaaagtaat ataaacatat ctgaaatcaa ataaaaccat aaayattcgt      1440
     aacaaatcaa tttttaaaaa gtaaagtggt gaatgggaca cgaaaaattg tatggaagca      1500
     ttttgaaarg ttttttgcaa ctaacaaaaa atactattat tagccataat acatttaaaa      1560
     tattacaaaa atctttaagt taataagtaa atttatckta aatggcaaaa tatttaaatt      1620
     atctttaaaa ttgtattttt aaaacgcatt caaagtagcg ggacaagaaa agacacaaaa      1680
     tgtacacttt ttctgattat gaccc                                            1705
//
ID   nhat-3_Hmel repbase;    DNA;    INV; 357 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-357
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 357 BP; 102 A; 76 C; 74 G; 105 T; 0 other;
     caggggttcc caacctgtgc gccgcggcgc cctagtgcgc catagaaagt aaaaaggggc        60
     gccgtgagtt ggttcctaaa tctaaaatcg gaaatctcaa aatctcttga gaaactgtgc       120
     ggagaccacc aagctcaacc gtcacattga attgactaag aactgtcgta ctttattatt       180
     cttgtcttaa ttgttatttt ctcatttaaa taaataaaac tcaatttcat attagtgtag       240
     gtatctattt ctttcgactg tttttttttc taatagcgaa ctagcttggg tagggcgccg       300
     tcaaaaaata ccaaacttgt aactgcgccg cgagctgaaa aaggttggga acccctg          357
//
ID   nhat-4_Hmel repbase;    DNA;    INV; 175 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-175
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 175 BP; 43 A; 44 C; 49 G; 39 T; 0 other;
     cagtggcgta gctagggggg tgcgagcggt gcggtcgcac cgggcatcaa aaggaaaagg        60
     ggcatcaaag tcgacgatca ctttgttttt cttttgtttt agaccttaga ccattttaaa       120
     gggcatcaag tcccctaagc cgcaccgggc agcaaatacc ctagctacgc cactg            175
//
ID   nhat-5_Hmel repbase;    DNA;    INV; 238 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-238
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 238 BP; 62 A; 52 C; 62 G; 62 T; 0 other;
     cagtggcgta gctagggggg tgcgagcggt gcggtcgcac cgggcatcaa aaggaaaggg        60
     gcatcaaagt cgacgattat tttttttaaa ggtagccaat gtcacatttt agtgtctgac       120
     acttgatcta cgtgagagta gaagacactt tgtttttttt tttagacctt agaccatttt       180
     aaagggcatc aagtccccta agccgcaccg ggcagcaaat accctagcta cgccactg         238
//
ID   nhat-6_Hmel repbase;    DNA;    INV; 475 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-475
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 475 BP; 137 A; 87 C; 121 G; 130 T; 0 other;
     cactagcggc gttagggtag ggcgaggctg ggcgaccgcc caggggcgcc ggataaaaag        60
     ggcgccgtag acgcccgttt agggcgcttt gcgcaaagat gtctcctcgc tgcagtggcg       120
     tagctagggt atttgctgcc cggtgcggct taggggactt gatgcccttt aaaatggtct       180
     aagatctaaa aaaaaaaaca aagtcatcgt cgtctttgat atctaaaaaa aaacaagtga       240
     tcttaacaac tttgaaaata aaattgcaga aaacatagac tttgaatgcc taataaaaga       300
     gttcgcagat agaaaggcta gaagaagtga aattttatta gtttttgtca ttattttttt       360
     taaatagatg gttatttcgt tgtacccatt cccttttttg tatgttattg aattgtagtt       420
     agggggcgcc gaaaaaattt cgcccagggc gccggtagtg ctaaaaccgg cactg            475
//
ID   nhat-7_Hmel repbase;    DNA;    INV; 2563 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2563
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2563 BP; 902 A; 328 C; 356 G; 927 T; 50 other;
     caggcccggt cgacttcctt aggagcttgg gcgacatacc tacttgggag ccgagtcctg        60
     ttgctatatt aaagtaaaac tactaattag tagtttttct aagagtattt ttttaagaat       120
     ttaattttaa ttcacgattt agttacttaa tgtttaataa ataactttct ttataatatt       180
     tcatgtatgc aaggcaccgt gataaaatdt ttttcgatat gagaaacart ttttatgtaa       240
     ccggtattta aagtacagta gtaggattat gttttgatat ggcaatggta kyattagcat       300
     ttgcaaatgg cgaacatact actgcgactt aaacaagcaa cctgttwtta gcatttctgt       360
     tgtattttat atttagattt ytattgtkgt tcagttgttc tctctgtttg aatatttgga       420
     tctaaaatat gggagacaat ttgaaaagta gatgcctcaa atgtcccctc gtgaagatcc       480
     tgaaattaaa ctatataggt tccctagtcc aggtcctacc aattcacacc ggtaagtaat       540
     cattaagtat taactactct agataaagtc atatcttaaa tgttgtactt tttyagttgt       600
     gaaacttggg ccaaktwthg mwtccyygaa ggcccrtrgt attctatcga ttttcagaaa       660
     aaaatgtatg gtgaacatag aatrttatgt tgccaccatt ttgaaagggc ttcrtttgtc       720
     aattttattg aaaaaaaaww mywgtttaga aaaackgtty yatttatkta cawattagta       780
     atcatacatt ggcaatgtat tttcatccaa ttatatttta ttttcagaat caggtaatcm       840
     aagatytwaa tttttccact raacaaycag ggacatcaca ttttcctgca aatkttatac       900
     cwggaccatt gcaaagaakg gyattsacra gtattcaaaw ggtaattcaa gtatattatt       960
     aattgatact ggttcacttg taatgacaat atatttaacw taaaaamyta tcdtaataaa      1020
     tagccyatyt tatggtaaca gtgaaaaaac ctaaaacaga tagatatata tgtaaaaata      1080
     aaatattaaa tattaattaa caattttaaa acataaacac agataaattt aaaaaaatac      1140
     taatagttac aactaaaatt acattaatct taaacaattt ctttaatttt cttttaattg      1200
     cttaatcaag aagattcatc taacaatgat atgttgattt tagtttctgt aacctgacct      1260
     ttattaactc ttgttatttt caggattgct acctggagag gcaacagtca ctgcaaattt      1320
     aggatktata tggdtaaatt gtttagctgc tgaaatagtg attctgcaga tcgaaagaaa      1380
     ggcagccacr ctgtaccaac atgactgaca attcttcatt tgaagaaaat gtatgttttt      1440
     tttctctaac tcaatcattt gaagaaaatg tatgactttt ttgaaaattg tacatttgtc      1500
     atagctctcc ccaatgcaag ctttgtgatt cagttttaaa attgaaacat accgataata      1560
     tattattgta cacttttatg gacttcaaag aatatgataa tgctaaaaag aagttaaact      1620
     atgtatctga aaattttata agattttatg tgttgagaac tgtgccacaa tctgcaataa      1680
     tttatacgaa acattatcat attctttaaa cctcaaaaaa cttgcaatct gcaaattgga      1740
     aaaagatgta aattttagtt ttcttgccca atgtgaggaa catcttaaag aaaatgttga      1800
     ttttatatgt aatagtgtct tccacataac agtaaaaaga ttttgtttag ttaaaaatag      1860
     acaatttgca gattatcaga aattattaaa aagaaaaata gatatataaa aaataagtaa      1920
     ttgtatatta atgttagatt taaattgacc aacactgtat taacttcatt atacctactt      1980
     tattaatttt atctttgtct gtaattgttt aaaaaaaaag aaattcaata acacaacaat      2040
     caagtacaac tgcctacaat cttataggtt aataaatata taaattatat tttttttgca      2100
     gattatgatc tatttaactt ataaaaatta aaattgttat tgtttttaac atataagggc      2160
     aagtttgtct tgtagcaatg ttgtaatctt tagcagtata ttttaattgt tttgcagaaa      2220
     tactatttgt gtaaatataa ttaaaccaaa tgtttataag caataaagaa aatgtaaggt      2280
     atttattagt tttatttctg cattaatttt ttattattgt gccataaatt attcagactc      2340
     tttcaaaatc atttggaggt attataaaat ataaaaaata ataattctta ataattttga      2400
     aagagtaata attctggctt ttgaataaag atcgatttaa agccaaattt taaatttccc      2460
     gcaaattgtg ttttgttggg cacgcacaga gatggcagca gcatcgtttt gtcacccatt      2520
     ttttagtatg aagtgaacat tctttgagta aatgtgttct gtg                        2563
//
ID   nhat-8_Hmel repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-342
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 342 BP; 87 A; 74 C; 83 G; 89 T; 9 other;
     cagtggcgta gctagggggg tgcgagcggg gcggtcgcac cgggcatcaa vaggaaaagg        60
     gcatcaaagt cgacgattag tgtgtttttt ctttgttttt tagacbttat accattttaa       120
     agggcatcaa gtcctctaag ccgcaccggg catcaaaagg aaaggggcat caaagtcgac       180
     gatcactttg ttttttttag aactcaacgt cgacgathac gttttttttt tagaagtcah       240
     cgtygacgat hacttydttt tttttttaga actcatcaac aggaaagggg catcaagtcc       300
     cccdagccgc accgggcagc aaatacccta gctacgccac tg                          342
//
ID   nhat-9_Hmel repbase;    DNA;    INV; 2146 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous hat element from Heliconius melpomene.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   nhat-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2146
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2146 BP; 612 A; 404 C; 462 G; 636 T; 32 other;
     cagtggcgga ctaagggggg ggcggcgggg gcggtccgcc ccgggcctcg ggtccagggg        60
     ggcctccaaa tggtgcaaat tcccttgatc aaatcctaaa taagcccttg aaaaaacgca       120
     tagtatctac ttaagaggaa gtttgaggtt ggagggggcc tccaataaac aaataagtac       180
     agggattagt gcagcctgta ccggtagttt acattatatt aattaaaatt acttttatct       240
     ttctaatgtc catttaggtt gcatgtggtt ccagtttcgt agttttttac ttcaagttcc       300
     tagggcctcc agaccgacgt cattttataa aagtttgcgt actcactaac ctgaaagtgg       360
     ggcccttcca gaagtagcgc aaaataaagg tacatctcta tctgggagga tgattgagcc       420
     atcagatcgg tttgggtgct tataaggggt cttaaaatag tccataaata atatatgtaa       480
     aattatagcg taatttttca aagtggtttt ggaagtcaaa tggcagttgc tccatttaaa       540
     aaccgccatc cgccgctaat atggaacgca acaacgtgtc aagtacgaac actgcttaaa       600
     acgctagtac ccagacagaa actccgcttt gcaacgtaga atattggctc tctaaccgga       660
     cgacgcagag aactcgcaga tgtacttata agacttcggg tccagtgtgc tttcctccag       720
     gaagcttgct ggaagggcaa taagcctcgc aataacggac agggttaccg ccttatatac       780
     accgggtcac cctcaggtaa aaactgtgtg gcagtagttc tttctgaaga gcttcagaac       840
     tggcttcttg aagctgatgg tcgctgcaat agcttgatgc gtataagggt gctgattgaa       900
     ggcgtaacta caaactaaat tagtgcctat gcgccgcagg ccggctgtag cgtgtccaaa       960
     aaagadtcat tctgaaagca gaatgaagag gttctacttg ctataccgtc taccgaaatg      1020
     gttgtttgtt gttggggaag atttgaacag tcaygtcagt aaggctgctg agccgtatga      1080
     acatgttcac gggggtttta gatactgact tcgtaataca gagggagaaa atattctgag      1140
     aacctatatt gcgtctgatc tggccgtcgc gaatacgttc ttccaaaaga accctcagca      1200
     cgggattaat gccaagaaga agtagaagaa gtatacgtat tttgtcccaa tattaaacaa      1260
     tctttaggac gtctggcaag agtaaagcct acgtaaaggg ttayaccagg gttataatat      1320
     ttttttttac atttttctca aaaatatatt taaatacgag cgtttttact ttaacgtagg      1380
     tgagcgtgta ccttaaattg gcgctatctt tgaaagggcc tcactttcaa gttagtaagt      1440
     acgcatacac tcttachtac ttattagact agtaatcttc aaaatttcag ctttactaaa      1500
     atgacgtagg tctactaggs tcctgggatc tcagtctatt ttattttata cgcggaacta      1560
     atattactat agcgtgtgaa ctagctcatg atgataaatt attatctata ttggaactaa      1620
     gcttatgatg gaagcttcag atgacgctct ggctvtagtc ctagataats tggtagaaat      1680
     ttacaatgaa tttgagaatg atcaggtttt acatctagag cagatgatct gcctccacct      1740
     gtacctatct atcgaatggt agtaatagag aatatcagtg ctcgtaacat tcttatttcg      1800
     gttttgatac aaatttctct tttcttccat acgttattta cacggatgat agcttctttt      1860
     gttatcccaa ttcgtctttt tatctcgagg acacgaggwt tttttttgct aaattytast      1920
     acatgtactt ttgatattta gtattttaat tttctatgtg tatncaagtc taactcaaac      1980
     attaattaca agatgtaaac taagtaagca tacacactaa tttgtacatg aaaaaaaatg      2040
     tgatatatwa aaawttttth wyayvrrrrv vkrkkdgggg ggggbdgtcr aggggcctca      2100
     ttcaacgaca ccgccccggg cctccgacgg ggttagtccg ccactg                     2146
//
ID   Nimb-10_LMi repbase;    DNA;    INV; 5795 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5795
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3169-3169 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..1848
FT                 /product="Nimb-10_LMi_1p"
FT                 /translation="MESSHVFNPGGMGVPSGGTRTHTSKRLREASPPETQS
FT                 ANSNRAQGVVNNNVFVVIKRKEGTFEKVSPFYINKGLEGLAGSLKSIKRLR
FT                 NGALLVETTRAKQVDLLLNSAKLGEYDIVVELHNTLNSSKGVVTCRDIMDI
FT                 ETAELKQEWASQGIIDVEQRTRRNNGVIEKTPTFIVTFNSPSLPEHLMAGF
FT                 LRLKVRPFIPNPMRCFTCQRFGHTTQNCGGQPTCGRCGQAAHDSGVDCPSP
FT                 ATCLNCSGSHPVWSRDCPVFVEERKIQEIKVRKRIPYVEAKKEYKATQPPV
FT                 FPTSYASLLQXPTPTVDASTQTIPISTSDTCTCICTCQTQVSRDIGIQADP
FT                 IDVKDEIAAAIIEKTPQKESAIPQERAVPTERAPQHQGATQKQVAPQKQSA
FT                 PRKQSAQQHALPSSSSXKKKPKKASRHSIESLPQAPSNVVLAALTDDEDII
FT                 MDLDTSSPESVSPSAAARSHSASPSRHKDRGKLQPHR"
FT   CDS           1853..5542
FT                 /product="Nimb-10_LMi_2p"
FT                 /translation="MATILQWNMNGFRARLDELHLLMKYRPFCVSLQETHF
FT                 KQCDTPVLRGYHLYRKDDLTGDRAQGGVAVFIKDTFHSTPVPLTTTLQAVA
FT                 VRVLAHIELTVCSLYLPPGEPLDVVLLTQLLDDLPRPFLLLGDFNAHNALW
FT                 GSNTTCPRGRMVERVIQSTAVILLNTGKATHFSVATGTSSAIDLSFCSPAL
FT                 ADIAQWDADDDLHGSDHYPIWLTLPDGMDHARQPPRWLIKKADWQLFKQLA
FT                 VLERHEGVQNWVDHTTAVIRAAADASIPKSKGNFKRQPVPWWNEECRSAIR
FT                 NRRAALRRFHRCPTDDNLATFRVARARARRIIRESKERSWQEFLNSINRFT
FT                 SASRVWEAIRRISRRNSRPPIAAVQGQGRLLTSPRDIAQVMAESFYTITSD
FT                 SSQNAAFRQHRAIQERVGFDFRSTNAEEYNQPFSLWELETALAVPRDTAPG
FT                 VDDITYSMLQQMEPQSKQVLLQLFNQIWLTGNFPRSWKESILIPILKPGKD
FT                 RTDAGSYRSISLTSCVGKTLERMVNRRLVWVLESRSLLSRSQCGFRRYRST
FT                 LDNLILLDREIQQAFLRKQHLIGVFFDLEKAYDTTWRRNVLQQLHEWGFRG
FT                 RLPIFIRSFLSDRYFRYKVGSVLSDRFHQENGIPQGSVLSVTAFAIAINSI
FT                 TSTVRSPVQCSLFVDDFSIFCASSSVATAARQLHLTIRRLEEWSNRTGFKF
FT                 SLEKTVCVDFNRSRSLFNSPVLKLGGTALTFKEKVKYLGLTFDEKLTWLPH
FT                 LKELKLRCIKALNLLKCVSHRAWGADRARLLQFYRSFVRPRLDYGCQVYGS
FT                 ARPSYLKMLDSIHHEGIRLSTGAYRTSPVVSLCAEAGEPPLSIRRLLLTVR
FT                 QAYRSMSAPNSLATFNANQQSLVRLFRNRPQATRPFWFRARESLNLLQAQG
FT                 IQVQRQGWSRGCPWLLQRPRVLLELTLYRKAFTSDTFYKRKFLEILSHHSD
FT                 FVTVYTDGSKQGDHIGCSVVFPDVVLRIGLPEQFTVYYAELFAILRALEQI
FT                 RRHHGVKFMICSDSQSALLAIDQMYPSDRMVQDIQDALLALQQRHKEIIFC
FT                 WVPGHTGIRGNELADVAAKEACSLPPAVRCSVPLQAVTSYVTRKAMILWED
FT                 QWLDVADNKLRALKSSVRPWRTSFRPRRAEEVALTRLRIGHCPLTHGFLLR
FT                 REEPPECNRCRTQLSIRHILTECHLYAGMRTTLGLSQDLKSILGDDEASVD
FT                 CVLRFCTTSGLLPKILGVRF"
XX
SQ   Sequence 5795 BP; 1414 A; 1476 C; 1436 G; 1466 T; 3 other;
     tccccccctc aggggctctg cattaatttg cggagtacgg gcttggcgaa cccggggtcc        60
     tgagctgagg actggtaagc gccgccagtc ctctagaccg taagccctgg gcatgcttca       120
     gcgaccaccg tgtggcgcag cggtggaacg ttgtgtgttg cagggagcgg ggatctcggc       180
     tttattgccc ggatcgtgag gatggaaaaa acctctataa aaaaaaaacc tcaatcccaa       240
     ggtgtgctgc gtgctgatgg gatgcatggc tgttgaggtt gaacagtcgc tagcgagcga       300
     cctctgggga tactgccgca cctcagttgt ataaggctta cccaggcaag cggggctctg       360
     cctgggtgga ccgtcccttc cctagctgct cgtgggaccg agatggagtc ctcacatgtt       420
     tttaaccccg gcgggatggg tgtaccgtca gggggtactc gcacccacac atctaagcgt       480
     ttgagggagg ccagtcctcc tgagacacaa tctgctaata gtaacagggc tcaaggagtc       540
     gttaataata atgtctttgt tgttattaag aggaaagagg gtacctttga aaaggtctct       600
     cctttctaca ttaataaggg actggaagga cttgcaggtt ctttgaaatc gattaagagg       660
     ctgcggaatg gcgctttgtt agttgagacg accagagcaa agcaggtgga ccttcttctg       720
     aattcagcaa agttagggga atatgacatt gttgtggaat tacacaacac gctcaattcc       780
     agcaaaggag tggtcacatg ccgtgacatt atggacatcg aaacggcaga actaaaacag       840
     gagtgggcat cacagggtat cattgacgtt gagcaaagga cccgaaggaa caatggagtg       900
     atagagaaaa cccctacctt cattgttact ttcaattccc cgtcattgcc agaacatctt       960
     atggcagggt ttctccgtct gaaagttagg ccttttatac cgaaccctat gaggtgtttc      1020
     acatgccagc gtttcggtca tacgacacag aattgtggag gtcaaccaac ctgtgggagg      1080
     tgtggacagg cagcccacga ctctggggtt gactgtccct ccccagcaac ttgtctaaac      1140
     tgctcgggaa gccaccctgt atggagtcgt gattgccctg tctttgttga agaaagaaaa      1200
     atacaggaga taaaagtgcg caaacgtatt ccgtatgtgg aggccaaaaa agaatataag      1260
     gcgacacagc ctcctgtgtt tccgacctcc tatgcctcac tactccagma acccacgccc      1320
     actgttgatg catcaacgca gaccatcccc atttccacca gcgacacttg cacctgcatc      1380
     tgtacatgcc aaactcaggt tagtcgagat attggaatac aggccgaccc aatagacgtg      1440
     aaagacgaga tagctgcagc aatcattgag aagacacccc aaaaggagag tgccatccca      1500
     caggaacgtg ccgttccaac agagcgcgct cctcaacacc agggagctac ccagaagcag      1560
     gtggcccccc agaagcagag tgctccccga aagcagagtg ctcagcaaca cgcccttcct      1620
     tcatcttctt ccgasaagaa gaaaccaaag aaggcgtctc ggcattcgat cgaaagcctc      1680
     ccccaggcac catcgaatgt cgttctggca gccttaaccg atgacgagga tatcataatg      1740
     gacctggata cctcatcacc ggaatcagtc agcccttctg ccgctgcccg ctcacacagt      1800
     gcctcaccgt ctcggcacaa ggataggggg aaactacaac cgcaccgctg aaatggcaac      1860
     catacttcaa tggaacatga acggattcag ggctcgtttg gacgaattac accttcttat      1920
     gaagtacagg ccattctgtg tctcccttca agagacacat ttcaagcagt gtgacacacc      1980
     tgtacttaga ggctaccacc tctacagaaa agacgacctg actggcgata gggcgcaagg      2040
     cggtgtggca gtgttcatca aggacacatt ccattccacg cctgtgcccc taactacaac      2100
     gctacaggca gttgcagtcc gtgtgttggc acatattgag cttacagtgt gttctctgta      2160
     tttgccacct ggagagcctc tcgatgttgt actcttgaca cagcttctcg atgaccttcc      2220
     tcgccccttt ctccttttag gagacttcaa tgctcataat gctttatggg gatctaacac      2280
     cacttgcccc aggggtcgaa tggttgagcg tgtgatacag tcgacagcgg taattttact      2340
     gaacacgggt aaggccacac acttcagcgt tgctacaggt acgtcttccg ccattgacct      2400
     ctccttctgt tcgccagctc ttgcagacat tgcccagtgg gatgctgacg acgaccttca      2460
     tggcagtgat cactacccta tctggctaac tctgccagat ggaatggatc atgctcgaca      2520
     gccgccgagg tggcttatca agaaagctga ttggcagctt tttaaacagt tggctgtttt      2580
     agagcggcat gaaggcgttc agaactgggt ggatcacact acagccgtga ttcgcgccgc      2640
     cgccgatgcg tcgatcccca aatcgaaggg caactttaag aggcagcctg ttccttggtg      2700
     gaacgaggag tgtcgttctg caatccgaaa caggagggca gctctccgac gattccacag      2760
     gtgccctact gatgacaatc ttgcaacttt tcgcgtggcg agggcacggg caagacgcat      2820
     tattcgagag agcaaggaga ggtcttggca agagttcctg aattctatca ataggttcac      2880
     atcagcaagc agagtatggg aagccattag gaggatctcg aggcggaact cccgaccacc      2940
     aatagcagct gtacaagggc aaggacgtct cctgacttcg ccacgggaca ttgctcaggt      3000
     aatggcagaa tcgttttaca ccattacgtc ggattctagc cagaatgcag cctttcggca      3060
     gcatcgggct atacaggaga gggttggttt tgatttccgg tccaccaatg ctgaggaata      3120
     taaccaaccg ttctcactat gggagctgga gactgcatta gcagtacctc gtgatactgc      3180
     ccctggcgtc gatgacataa cgtacagcat gctccaacag atggaaccgc aatcgaagca      3240
     ggtcctcctt cagcttttta accaaatctg gctcacggga aactttcccc gctcgtggaa      3300
     agagtctatt ttaataccta ttttaaaacc agggaaagat cggactgacg ctggtagtta      3360
     tcgtagcata agcctcacca gctgtgtagg aaagacattg gagcgtatgg ttaaccgacg      3420
     cctagtctgg gtcctggaaa gcaggtccct actcagccgc tcccaatgcg gcttcagaag      3480
     gtaccgttca acgcttgata acctgatctt gcttgaccgg gaaatccaac aagctttcct      3540
     acgtaagcaa cacctgatcg gtgtgttctt tgatctggaa aaagcctacg atactacctg      3600
     gaggcgtaat gttttacagc agctccatga gtggggtttt cgtggtcgtc tacccatttt      3660
     tattcggtct ttcctttcgg atcggtattt tagatacaag gtcgggagtg tattgtctga      3720
     ccgttttcat caagagaatg gtatccccca agggagtgtt ttaagtgtga cggccttcgc      3780
     cattgctatc aacagtatta cgtccactgt acgaagtcca gtacagtgtt ccctctttgt      3840
     ggacgatttc tccattttct gtgcgtcctc ctccgtcgca actgctgctc gtcaattgca      3900
     tctgacgatc aggcggttgg aggaatggtc caacagaaca ggttttaaat tttcgttgga      3960
     gaagaccgtt tgtgttgatt ttaatcgctc ccgttctctt tttaattccc cagttctcaa      4020
     acttgggggg actgctctca cttttaagga gaaggtgaaa tacctcggtc ttacttttga      4080
     tgaaaagcta acttggttgc cacaccttaa ggaattaaaa ttacgatgca tcaaggcttt      4140
     aaatctcctt aagtgtgtta gccatcgggc ctggggagcc gacagggcac gtctcctcca      4200
     attttacagg tcatttgtgc gaccccgcct cgactatgga tgccaggttt atggatccgc      4260
     gaggccctct tatttgaaaa tgctggactc catacaccat gaaggtatca ggttgtccac      4320
     aggtgcatac cgcacgagcc cggttgttag cctctgtgca gaggctggtg agcctccgct      4380
     ttctattcgc cgccttctac taactgtacg tcaagcgtac cgatctatgt ctgctccaaa      4440
     ttccctagcg actttcaatg ctaatcagca atcattggta cgcttgttcc gtaaccgtcc      4500
     gcaggcgaca aggccctttt ggttccgcgc aagggaaagc ctcaatttgc tacaggcgca      4560
     aggcattcag gtccaacgcc aggggtggag taggggatgt ccctggctac ttcagaggcc      4620
     cagggtgctt ttagagttga ctctctacag gaaggctttt acttcagaca ccttttataa      4680
     acgtaaattt ctcgaaattt taagtcacca ttctgatttt gtcacggtat acacggatgg      4740
     gtccaagcag ggtgatcata ttggttgctc tgtcgtgttc cccgatgttg tccttcggat      4800
     agggctccca gaacagttca ccgtttatta cgcggaactg tttgctatcc tgagggcact      4860
     agaacagata agaagacatc atggagtgaa gttcatgatc tgttcagact cccaaagtgc      4920
     cctcctggct atcgaccaaa tgtacccatc agatcggatg gtgcaggata tacaggacgc      4980
     tctccttgca ctgcaacaac gccacaagga gatcatcttc tgttgggttc ctgggcacac      5040
     tgggatccgg ggaaacgagc ttgccgatgt ggcggctaag gaggcttgct ccctcccccc      5100
     tgccgtacgc tgttctgtcc cactgcaggc tgttacctcg tatgtgacaa ggaaagccat      5160
     gattttgtgg gaggatcagt ggctggatgt ggcggataac aagttacgcg cactaaaatc      5220
     ttcagtacgt ccatggcgta cttccttccg ccctcgacga gctgaggaag tcgccctcac      5280
     tcgccttaga attggacact gcccgctaac gcatggcttt cttttgcgtc gtgaggaacc      5340
     gccagagtgt aacagatgtc ggacacaatt gtcgatacga catattttaa cagaatgcca      5400
     tttatacgct ggtatgagga caactttagg tctctcacag gacctgaaat ctattttagg      5460
     tgacgatgag gcgtccgtgg attgtgtcct aagattttgt acaacatctg gacttcttcc      5520
     caaaatattg ggtgtacgat tttaatgtgt gacagagtgg ctcggtcact cttttaagta      5580
     gtcaccgggc cccatacatc tatcaaamtt ttatccccgt atgcagtcct ttcctttgaa      5640
     ccgtctttta agacattcta acttcaattg tacatttaaa tttttaatgt ccatacgact      5700
     ggaaccattt ttcttctcat ctgtttacgt tagcatacgg gcgctgatga cctcgctgtt      5760
     gagcgcccta aaacgccaat catcatcatc atcat                                 5795
//
ID   Nimb-11_LMi repbase;    DNA;    INV; 5330 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5330
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3170-3170 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           9..1232
FT                 /product="Nimb-11_LMi_1p"
FT                 /translation="MKSGAVLIQTASPAQSRALLACDKLGEIPVSVTPHKS
FT                 LNMVQGIIYHRDLLSQTDEELRANLQRRGVHFVRRVYRGPKENRVATGAFI
FT                 LAFEGDTLPEKVKIMIYRCDVKPYVPPPMRCFRCWKFGHMSSRCTSSPNCR
FT                 ECGRPSHPDTPCTPPPVCVNCGQHHPPCSPTCTVLHRERKIMEIKTLDRLT
FT                 FSEARKKYERLHPVKMTXSFAAVTAAPVSLQSTVPVTSPSVGPMGQQPSTA
FT                 PSMGGGPSTSIAPPKPVGAIPTPPSGTPVPTPQPGKQQSSPAPLARKGSLV
FT                 APPPEASTSGLEDPSHRLQDPPAPSRRVSRSTSGPETTCEKSSQPLRPKGQ
FT                 REAKKKKLKKKVSSVTSKSIPTSSASEDEVQIFASLEDLALTKTLEPMVLD
FT                 DVDAQRLADRKSLD"
FT   CDS           1255..4950
FT                 /product="Nimb-11_LMi_2p"
FT                 /translation="MAFRQGVNQILQWNCGGFFNRLAELQQLLCRFPVLCM
FT                 ALQETWFPARRTPALRGYRGYFNNRADCDRASGGVCIYTLATVPSIAVPLH
FT                 TPIEAVAVRLRATQEFTVCSIYLPPDRDVSPTDLAALVAQLPPPFLLLGDF
FT                 NAHHPLWGGTETTRRGRDVETLLAQQDICLLNTGSPTHFSVAHGTFSAIDL
FT                 SVCSPILLPHLTWRAHDDLCGSDHFPIFLSLPQSQQAEXLPRWSLHRADWQ
FT                 RYTSAVVIPAQLPADVDVAVQQVTVAIVSAAEATVPTTSGSPRRKSVPWWS
FT                 QEIAEAIRDRRRALQRYRRHPTIDHLIAFKRLRARARRLIRQSKQDCWERY
FT                 VASIGSRASPSRVWTQVRRLFGYRPPAGIPCLRLQGTVCSDPLAVAEHMAQ
FT                 FYAGISSTEAYSEAFRAIKXRVERKPLSFHTRRQEPYNAPFSEWEFQCALA
FT                 ACPDTCPGPDRVHSQFLRHLPVDAQNQLLALFNRLWAEGVFPSQWRESTII
FT                 PVIKPGADPQVADSYRPISLTNVLCKLVERMVSRRLMWILEDRGLLVAQQG
FT                 GFRQGRSTIDNLVSLESAIRTAFTRREHLVAVFFDLRKAYDTTWRHHILAT
FT                 LYDWGLRGPLPVFIGNFLSHRSFRVRVGTTLSSSHIQENGVPQGSVLSVPL
FT                 FLIAINGLATAVGSSVCSSLFADDFCLYFSSASISVAERRLQGAIRKAESW
FT                 ASTHGFQFSAQKTRVIHFCRRRAVHMDPELYLGGELLXVEETHRFLGMVFD
FT                 NRLTWVPHLRQLRQKCSRHLNILRCLSHTAWGAARSTLLQLYKSLIQSRLD
FT                 YGCLVYDSAAPSALRILDPIHHSGIRLATGAFRTSPVPSLLAEAGIPPLHF
FT                 RRQQLLASYVARVHATPHHPNRRLLFPTVTPPFPPRRPRSGLPIAIRVRTL
FT                 LSSLHSLPLPDAFSCPSRLPPWSIPRLKLHLQLSCDTKALVSPLTLRCKFL
FT                 ALLAAHRDAEVLYTDGSLVNGRASYAFVHGDHTEQRSLPPGCSIFTAELIA
FT                 ISRALDHLKTCPRKSYVVCSDSLSGLQALSNYFSSHPLVQSIQNAIASLGK
FT                 SGCSVDFIWTPGHIGIPGNERVDRLAKLATTAPPLDIGIPERDIRLDLRHK
FT                 VFEAWNTQWATLSTPNKLRAIKSSTAVWKSSFRPSRRDSVVLCRLRIGHTW
FT                 LTHGYLLRKEDPPNCRCGSLLTVVHILSDCPLLAALRQSFNLPTAPALILS
FT                 DNASMADRVLGFIRAAGFYRSI"
XX
SQ   Sequence 5330 BP; 1056 A; 1573 C; 1289 G; 1403 T; 9 other;
     tttccaagat gaaaagtggg gctgtactga tacagacggc gtccccagcc caatcgcgtg        60
     cattacttgc ctgcgataag ctgggtgaga tcccggtgag tgtcacgccc cacaagtctt       120
     taaacatggt ccagggtata atctaccata gagatctgtt gtcccagacc gatgaagagt       180
     tgcgagcaaa cctgcagcgt cgaggtgttc atttcgtccg tcgagtgtac aggggaccta       240
     aggaaaacag ggttgccacc ggtgctttta tcttggcctt cgaaggcgat acactgcctg       300
     agaaggtcaa gataatgata taccggtgtg atgtaaagcc gtatgtccct ccccctatgc       360
     ggtgtttccg gtgctggaag ttcgggcaca tgtcgtcccg gtgtacttcc agcccgaact       420
     gcagggaatg tgggcggcca tcacacccgg acaccccatg taccccacct cccgtttgtg       480
     taaactgcgg gcaacatcat ccgccatgct cgccgacctg tactgttctt catcgggaaa       540
     gaaaaatcat ggaaataaag accctggacc ggctcacttt ctctgaggca cgcaaaaaat       600
     acgagcggct ccatcctgta aagatgacgn catctttcgc cgcagtcaca gcggcgccgg       660
     tttcnttgca atcgacggta ccagtgacct ctccatctgt gggccctatg ggccaacaac       720
     cttctactgc cccctcgatg ggtgggggac cgtctacgtc cattgctccc ccaaaacctg       780
     tgggagccat acccacccca ccatcgggga ctccagtccc cactccccag ccggggaagc       840
     aacagtcttc cccggcccct ctcgcccgga aggggtccct tgtggcaccc cctcccgagg       900
     cttccacgag tggattggag gatcccagcc acaggctgca ggatccacct gcccccagtc       960
     gacgggtttc ccgatcgaca tcgggcccag aaaccacttg cgagaagtcc tcccagccct      1020
     taagaccgaa agggcagcga gaggctaaga agaaaaagct taagaagaaa gtctcctcgg      1080
     tgacttcaaa gtcaattcct acgtcatctg cctcggaaga tgaggtgcag atcttcgcgt      1140
     ctctcgagga tctggccctc actaaaacac tcgagccaat ggtcctagat gatgtagatg      1200
     cgcaacgcct agcagaccgc aaatctttgg actgacgatc tttagtttta catcatggct      1260
     ttccggcaag gagtgaatca aattctccaa tggaattgcg gaggattttt caaccgttta      1320
     gctgagctgc agcagttgtt gtgccgtttc ccagtgctgt gtatggctct gcaggaaacc      1380
     tggtttcctg ctcggcggac cccagccctt cgtggctatc ggggctactt caacaaccgt      1440
     gccgactgtg acagagcctc tggcggtgtc tgtatataca cccttgccac tgtccccagt      1500
     attgctgtgc ctctccacac acctattgag gctgttgctg ttcgccttcg ggctacgcaa      1560
     gaattcactg tctgttctat ataccttcct ccagacaggg atgtttcgcc cactgatctt      1620
     gctgctctgg tagcacagct gcccccaccg tttcttcttt tgggggactt taacgcccat      1680
     caccctttat ggggcggaac agagacgact cgacgtggta gggatgttga aactcttctt      1740
     gcacaacaag acatctgcct tctaaatact ggttccccga cgcacttcag tgttgcgcat      1800
     ggcacttttt cagccatcga tctctcggtc tgtagcccga tccttcttcc acacctcact      1860
     tggagggccc acgatgacct ctgcgggagc gaccattttc ctatcttttt gtcgctccca      1920
     cagtctcaac aggcggaaca nctgcctcga tggtccctcc atagggctga ttggcagcgt      1980
     tacacctctg ctgttgtcat tcctgcccaa ctgccagccg atgtggatgt ggcggtccaa      2040
     caggtgactg tcgccatagt ttccgctgct gaggccactg ttccaaccac ctcagggtcc      2100
     cctcggcgca aatctgtgcc ttggtggtca caagaaatcg ctgaagccat tcgggatcgg      2160
     cgtagggcac ttcagcgcta ccggcgacat cccaccatcg atcacctgat tgcttttaaa      2220
     cggctccggg cccgagctcg acggcttata cggcaaagta agcaagattg ttgggagagg      2280
     tacgtcgcct ctattggatc tcgtgcctca ccttctcggg tgtggaccca ggttcgacgt      2340
     cttttcgggt accgcccacc agcgggaatc ccctgtcttc gcttacaggg tactgtctgc      2400
     tcngacccgc ttgctgtcgc cgagcacatg gcacagtttt atgcaggcat cagttcgact      2460
     gaagcttaca gtgaagcctt ccgcgccata aaagancgag ttgagcggaa gccactgtcg      2520
     tttcacacgc gtcgccagga gccgtacaat gcacccttta gcgagtggga gtttcaatgt      2580
     gcccttgctg catgccccga tacttgtcca ggaccagatc gtgtccatag ccagtttctt      2640
     cggcatcttc ctgtggacgc tcagaaccaa ctgctcgcct tgtttaaccg tctctgggca      2700
     gaaggtgttt ttccctcaca atggcgggaa agcaccatca tcccagtgat aaaacctggc      2760
     gctgacccac aggtggctga cagttaccgt ccgatcagcc tcacgaacgt tctatgcaag      2820
     ctcgttgaac gtatggtgag tcggcggctt atgtggatcc tcgaagaccg gggactcttg      2880
     gttgcacaac aagggggttt ccgtcagggc cgctccacaa ttgacaatct tgtgtcgttg      2940
     gagtcggcta tacgtacagc ctttacccga cgtgaacacc ttgttgctgt gtttttcgat      3000
     ctccggaaag cgtacgacac aacctggcgc caccacatac tggctacatt gtacgactgg      3060
     ggcttacggg gcccacttcc ggtctttatc gggaattttc tctcccaccg ctcttttagg      3120
     gttagggtgg gtaccactct tagttcctca cacatccaag agaacggtgt cccacagggc      3180
     tccgtcctca gtgtgcctct gtttttaatc gccataaacg ggcttgccac ggctgtggga      3240
     tcctctgtct gttctagctt gtttgctgat gacttttgtc tgtattttag ttcggctagt      3300
     attagcgtcg ctgagcggcg gctacaggga gccatccgaa aagccgaatc atgggcctct      3360
     acccatggtt ttcagttttc agcgcagaaa acccgcgtga tacacttctg tcgccgncgg      3420
     gcagttcaca tggatcccga gttatatctg ggtggtgaat tgctcntcgt cgaagagacg      3480
     catcggtttc ttgggatggt attcgacaac aggcttactt gggtgccaca tctgcgtcag      3540
     ctgcgacaaa aatgctcgcg acatctnaat attctccgct gcttgagcca tactgcttgg      3600
     ggcgctgctc gttccaccct cctgcagctg tacaagtcct tgatacaatc aaggcttgat      3660
     tacgggtgcc tggtatacga ctcggcagca ccatccgcct tgaggatcct tgaccccatc      3720
     caccatagtg gtatccggct ggcgactggg gccttccgca ccagccctgt gccaagtctt      3780
     cttgccgaag cagggattcc tccattacac tttcgccggc agcagcttct cgctagctat      3840
     gttgctcgag tccatgccac gccacaccat ccgaatcgca ggcttttgtt tccgactgtt      3900
     acccctcctt ttccaccacg tcgacctaga tcaggtcttc caatcgcgat ccgggttcgt      3960
     acactccttt cctcacttca ttccctacct ctccctgacg ctttttcctg cccatcccgt      4020
     cttcctcctt ggtccatccc ccgtttgaag ctccacctgc aattgtcctg cgatacaaag      4080
     gcattagttt caccactgac actccgttgc aagtttctgg cactccttgc tgctcaccgt      4140
     gatgcagaag tcctgtacac tgatggctcc ctggtaaatg gcagagccag ttacgctttt      4200
     gttcatggcg accacacaga acaacggtcc ctgccacctg gctgtagtat ttttacagct      4260
     gaactgatcg ccatttctcg tgctcttgat cacctcaaaa cgtgcccccg gaagtcgtat      4320
     gtcgtgtgca gcgactccct tagtggcctg caagcccttt ccaactattt ctcttcccat      4380
     ccgttggtgc aatccattca aaacgccatc gcttcactcg gcaagtctgg ctgttcggtg      4440
     gactttattt ggacccccgg ccacattggc atcccgggga acgagcgtgt cgatcggctg      4500
     gctaagctcg ccaccaccgc tcctcccctg gatattggta tcccagaacg ggatatccga      4560
     ttggatttgc gccacaaggt ttttgaggct tggaacacac aatgggcaac actgagcact      4620
     cccaacaagc tccgagcgat caagtcctct acggccgtct ggaagtcgtc tttcaggcct      4680
     tcccgtaggg actctgttgt cctgtgtcgc ttacgtattg gccatacgtg gttgacgcat      4740
     ggctaccttt tacgtaaaga ggacccaccg aattgccgtt gtggaagttt gttgacagtg      4800
     gtccacatcc tgtcggactg tccgctttta gccgccttgc ggcagtcttt taatctacct      4860
     actgcgcctg ccttgatttt atctgacaat gcctcaatgg ctgaccgagt tttaggtttt      4920
     atacgcgcag ctggatttta tcgttctatt tagtggtggg ctcgtgcctg gtgtctcagg      4980
     ctcccacctc tcatctttta ctctgatgtt tttcttactt ctaccctgtt tttacctcag      5040
     agtttttagt ctgtgcagag tgactggctc atcttgtatt tgtttgtgat cagccagcca      5100
     ctgttccctg ctctatttta gcttagttca acacttggtc tctcttattc ctgtcttctt      5160
     cagtgttgtt gagagtatca agttcattgg cactgtgtgc cccttacgcc tctcttctgg      5220
     gtgttgagct ntattttact ttttcctact tggatgtctt gtcttcgcta ggaacagggg      5280
     actgataacc atgtagttta gtcccctcta aaccccaaac aacaacaaca                 5330
//
ID   Nimb-12_LMi repbase;    DNA;    INV; 5484 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5484
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3171-3171 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2576..5194
FT                 /product="Nimb-12_LMi_2p"
FT                 /translation="MGNGTLQTRPADIAQTMATYFATVTATATYFATVTAT
FT                 ASQDPEFRRHRVAAERGPLDFRSGITEEYNRPFSLWELDSALCVARDTSPG
FT                 HDGIHYAMLRHLTDRNKVILLNLFNAIWMSGHFPDLWREAILIPLLKPGKD
FT                 STCPSSYRSVALTSCIGKTLERMVNRRLVWMLESRQLLSRFQCGFRRYRST
FT                 FDNLASLEAAIQQAFLRRHHLLGVFFDIEKAYDTTWRHLILRQLHEWGFRG
FT                 CLPIFIRSFLSPRFFRYRVGGVLSDRFEQENGVPQGSVLSVTLFAIAINSI
FT                 TCVVKSPVQCSLFVDDFSVFCSSSSLATTTRQLQLTLRRLDEWAQKTGFKF
FT                 STEKSVCVCFNRSRSIFNLPELRMRDTVLNFKDTVRFLGLTFDSKLTWLPH
FT                 LKDLKRRCLKALSILKCLSHTSWGADRTCLLRFYRAFVRTRLDYGCTVYGS
FT                 ARPSYLKMLDVVHHEGIRLATGAFRTSPIPSLCAEAGEPPLHMRRQFLVAR
FT                 QAYTTLSSPNTPAYPVVAHPPAERLFRTRLRATRPFGIRSQDCLLDMDVSG
FT                 FNVLQRGWSKCPPWLLQRPRLLLELTHFKKHSTSDFIFQSMFSNILDQHRD
FT                 FTVVYTDGSKQGDSIGCSIVFPNTTIRIRLPPAYSVFSAELHAILRALEQM
FT                 QRVRGTKFLLCSDSLSALQSIRNLYPAEKIVQLIHDRMYTLQQRGKQVTFC
FT                 WVPGHVGIRGNEMADRAAKEACEGSGITHCAVPLPDILSVVRRKSLRLWEE
FT                 AWQAVTNNKLRLVKPTVRPWRTSCQSLRQHEVALTRLRIGHCPLTHGYLLR
FT                 REDPPICDACGVQITVRHILLECISYRAARAAVALCGPLPSVLADDEASVT
FT                 KVFNFCELSGLWPKLLGWRF"
FT   CDS           join(28..1422,1426..2448)
FT                 /product="Nimb-12_LMi_1p"
FT                 /translation="MSNSNLSLEPSSGMGVPLGGTNTQSKKRARISSPPDS
FT                 GSKKKSFVNSNRTQAVVQNVFIVVKRKDGSFEGVSPFYIQKGLEGIAGSLK
FT                 SVKRLRNGTLLIETSSSQQATNLQQAKFLGEYAIEAELHNTLNYSKGVVTC
FT                 RDLVNIPLEELKSEWAQEGILDVQNIMKRVDGELVKSDSFILTFNNPQLPD
FT                 HVKAGFLRLKVRPYVPNPMRCFKCQRFGHTTLGCKGEATCGKCGKVAHDGA
FT                 ECTPPATCVNCSGDHPVWSRDCKVFLEEKKVQEIKTTKRISYAEAKKIFLA
FT                 MQPPAFAASFASVVQKPIAKXDAVTQTESVCVGTNTCTCQCTCQAAAAAVE
FT                 ASSPVGPQTSEKGTDPPXVEMMAPPVAEVGQKSTTATTSATGAHPKPPKAK
FT                 KAVEKSLSQDKPEVTLFEPVHLRVTDAPSDSASEPMDLDVRLGQPNRPKSD
FT                 PLPHSVSPPRRREKVRVKPPAMAPILQWNMQGFRTHVEELRLLSQGRPLCM
FT                 CLQETNFKPSDSPEIRGYTLHRKDDVSGXRARGGVAIFVCTAYHSEPLSLT
FT                 TSLQAVAVSVYVRHRLTVCSLYLPPHDTLNEEDLKDLLTQLPQPFLLCGDF
FT                 NAHNVLWGSVTTCPRGRAIERLLLSSNAHLLNTGQPTHFCTATGSLSAIDL
FT                 TLCSPSLAHTIQWDVVDDLHGSDHFPISISQPYGIEPERHPPRWILSRADW
FT                 ALYSQLAHLEHRDSVTEWVHHITAVMHFAADASIPQSSGRPKRQPVPWWND
FT                 ECRSAIRTRRAALRRFKCRPTSENLPRHFTWSRWDPLCCVMAPYRSKLSYP
FT                 PQPF"
XX
SQ   Sequence 5484 BP; 1251 A; 1423 C; 1342 G; 1463 T; 5 other;
     acttccctag ctgctcgtgg gaccgagatg agcaattcca atttgtccct cgaaccttcc        60
     agtgggatgg gtgtaccact ggggggtacc aacacccaat ccaaaaagag ggctaggata       120
     tccagtcctc ctgattcggg gagtaagaaa aagagttttg tgaatagtaa cagaacacag       180
     gctgttgtgc agaatgtgtt tattgttgtg aaacgaaagg acggctcgtt tgagggagta       240
     tctcctttct atattcaaaa aggccttgag ggaattgctg gcagtttaaa atcagtgaaa       300
     cgtttgcgaa atgggacatt actgatcgaa acatcgagtt cccagcaggc aaccaacctg       360
     cagcaggcga aattcctggg tgaatatgcc atagaggcgg agttacataa caccttgaac       420
     tatagtaaag gcgtagtgac ctgtagagat ctagtaaaca tccctttgga agaactgaaa       480
     tctgagtggg cacaggaggg tattttggat gtgcaaaata ttatgaaaag ggtggatggt       540
     gagttggtga aatcggactc attcatcctc accttcaata atccccaact tccagatcat       600
     gtcaaagcag gtttccttcg tctgaaagtt cgaccttacg tccccaaccc aatgcgctgc       660
     ttcaaatgcc agcgctttgg gcataccacc ctggggtgca aaggtgaggc cacctgtggc       720
     aaatgtggca aggtcgcgca tgacggagcc gagtgtacac cacccgccac gtgtgtaaac       780
     tgctctgggg atcaccccgt ctggagtcgt gattgcaaag tcttccttga ggaaaaaaag       840
     gtgcaggaaa taaagaccac gaagcgcatc tcgtatgctg aggccaagaa aatcttcctg       900
     gccatgcaac caccagcctt tgccgcgtct ttcgcttctg ttgtccagaa gccgattgcc       960
     aaangtgatg ctgtcacgca aactgagtct gtttgtgttg gtactaacac ttgcacttgc      1020
     cagtgcacct gccaggcggc tgctgcagcc gtagaagctt ccagtccggt cggtccccaa      1080
     acatcggaaa aaggcactga tccgcctnct gtagagatga tggccccccc ggtagcagag      1140
     gttggccaaa aatccaccac agccactacc tctgcaacag gcgcccatcc gaagccacct      1200
     aaggccaaaa aagcagtcga gaagtctctg tcacaggata aaccagaagt tacactgttt      1260
     gagcctgtcc atttacgtgt aacagatgct ccatccgact ctgcgtcaga gccaatggac      1320
     cttgatgtgc gtttggggca acctaaccgc cccaagtcgg accctctacc ccatagcgtc      1380
     tcgccgcctc ggcggagaga gaaggtgagg gtgaaacctc cgtaagcgat ggctcccata      1440
     ctacaatgga atatgcaggg ctttaggacc catgtggagg aacttcgtct cttatctcag      1500
     ggtcgacctc tgtgtatgtg tctccaggag acaaatttta agccttccga ctcccctgag      1560
     atacgtggtt acactctaca taggaaggat gacgtaagtg gggngagagc taggggtgga      1620
     gtggctattt ttgtttgtac agcctaccac tccgagcccc tctccctcac cacaagcctc      1680
     caagcagtcg cagtatctgt atatgtgcgt catcgactga ctgtttgctc cctctatctg      1740
     ccccctcatg atacgcttaa tgaagaggac ctcaaggacc ttcttactca gcttccccag      1800
     ccatttctcc tctgtggaga ctttaatgca cataatgtgc tttggggctc tgtcactact      1860
     tgccccaggg gtagagccat tgagcggctc ctcttgtcgt cgaacgcaca tttacttaac      1920
     accggtcagc ccacacactt ttgtactgcg acagggtcat tatctgccat agacctcact      1980
     ctttgctctc catcccttgc ccacactata caatgggacg tggtcgatga tctccatgga      2040
     agcgatcact ttccaatctc catttcccaa ccgtatggaa tcgaacctga aagacacccg      2100
     ccgcgatgga tactcagtag agcggattgg gcactttaca gccaacttgc tcaccttgaa      2160
     catcgtgaca gtgtcacaga atgggtgcac catattactg ccgtgatgca cttcgccgct      2220
     gatgcatcca ttccacagtc ttcgggacgt ccaaaacggc agccagtccc gtggtggaat      2280
     gacgaatgcc gatctgccat caggaccagg cgggcggctc tgcgtcggtt caagtgtcgt      2340
     ccgacttcag agaacctccc gagacacttc acctggtcac gatgggatcc actatgctgt      2400
     gttatggcac cttacagatc gaaactaagt tatcctcctc aaccttttta atgccatttg      2460
     gaggtcatgg cagcagttcc cgagttccat taaccgttct acaaccagca cgaaagtatg      2520
     ggagaccatc aggaggattt ctggaagagg aggaaggtgc cccatagctg ctgtaatggg      2580
     taacggnact ttacaaacac gaccagcaga cattgcccag accatggcta cttacttcgc      2640
     taccgttact gccacggcta cttacttcgc taccgttact gccactgcta gtcaggatcc      2700
     agaattccgg cgccacagag tggctgctga gaggggcccc ctggacttca ggtccgggat      2760
     tactgaggag tacaaccgcc ctttctccct gtgggaattg gattctgcat tgtgtgtagc      2820
     ccgagacact tcacctggtc acgatgggat ccactatgct atgttacggc accttacaga      2880
     tcgaaacaaa gttatcctcc ttaacctttt taatgccatt tggatgtcag gacactttcc      2940
     cgacttgtgg agagaggcta ttttaattcc ccttttaaaa cccggtaaag attccacatg      3000
     ccccagcagt taccgtagtg ttgccctcac tagttgcatt ggaaagaccc tggagcggat      3060
     ggtcaaccgc cgccttgtct ggatgttgga atccaggcag ctccttagtc gcttccagtg      3120
     tgggttcagg agatatcgtt ccaccttcga taacctggcc tctctggagg cggcaataca      3180
     acaggctttc ctgcgccgtc atcaccttct gggtgtattt tttgatatcg agaaggccta      3240
     cgatactact tggaggcatc ttatacttag gcagcttcac gaatggggat ttcgcggttg      3300
     ccttccaatt tttattcggt cattcctttc tccacgtttt tttagatacc gagtcggtgg      3360
     cgtgctctct gaccgcttcg agcaggaaaa cggtgtccct cagggtagtg ttttaagtgt      3420
     gacgttgttt gctatagcca ttaacagtat cacttgtgtt gtgaaaagtc ctgtccagtg      3480
     ttcactattt gttgatgact tctctgtctt ctgttcttct tccagccttg caacgacaac      3540
     tcgtcagttg cagctcactc tccggcggct cgacgaatgg gcacagaaga ccggttttaa      3600
     attttcaaca gagaagtctg tgtgtgtttg ttttaaccgt tcacgttcta tttttaactt      3660
     acctgaactg cggatgaggg acactgttct gaattttaaa gacactgtgc gttttctggg      3720
     tctgacattt gactctaaac ttacctggtt gccacatctt aaagatttga agagacggtg      3780
     cctcaaggca ctaagtattt taaagtgtct tagccacact tcgtggggag ccgacaggac      3840
     ttgtctgcta cggttttata gagcatttgt gcgtactcga cttgactatg ggtgcaccgt      3900
     gtatgggtca gcaagaccct cttatttaaa gatgctggac gtggtgcatc atgaggggat      3960
     tcggctcgcg actggggcat tccgcacgag tcccatacca agtctctgcg ccgaggctgg      4020
     tgagccacca cttcacatgc ggcgacagtt cctcgtggca cgccaggcat atacgacttt      4080
     gtcctcgcca aatacaccag cctatcctgt cgttgcccac cctcctgcgg aacggctttt      4140
     tcgtaccagg ctacgggcaa cgaggccttt tgggatacgt tctcaggatt gtcttttgga      4200
     tatggatgtg tctggtttta atgttttgca gcgaggttgg agtaaatgtc caccctggct      4260
     cctccagcgg ccgagattac ttttagagtt gacacatttt aagaagcatt ctacttccga      4320
     ttttatattt caatctatgt tctctaacat tttagatcag catcgtgatt ttaccgtggt      4380
     gtacacggat gggtccaaac agggggactc gataggctgc tccatagtgt tccccaacac      4440
     caccatcagg attcgcctcc cccctgcata ctccgttttc tcagcagaac tccatgcgat      4500
     cctgcgggcg ctggagcaaa tgcagcgggt tcgtggcacg aagtttctcc tgtgctccga      4560
     ttctctcagt gcgctgcaat ccatacgcaa tttgtatcca gctgagaaga tagtacagct      4620
     cattcatgac agaatgtaca ctctccagca gcgggggaag caagtgacat tctgttgggt      4680
     accaggacat gtcggcattc gtggcaacga aatggctgat cgggctgcca aggaggcttg      4740
     cgaaggctct ggtattacac attgtgccgt tcccctgccg gacatcctct ctgtggtgcg      4800
     gcggaagtcc cttcgtttgt gggaggaggc gtggcaggca gtgacgaaca ataaactgcg      4860
     gttggttaag ccaactgtcc gaccgtggcg aacatcctgt cagtcattga ggcagcatga      4920
     agtggccttg acacgtctcc gaatcgggca ttgtcctctg acacatggct atttactccg      4980
     tcgagaggac cctccgattt gcgatgcttg tggtgtgcaa atcactgtac gccacatttt      5040
     actggaatgt atttcctacc gtgctgctag ggcagcggtg gctctttgtg gtcccctgcc      5100
     ctctgtttta gctgatgacg aggcgagtgt gacgaaagtt ttcaatttct gtgaactttc      5160
     cggactctgg cctaagcttt taggctggag gttttaggac gttaacgaat ggctagccca      5220
     ccactcctct ggcacggcat tttgagtacg tctaagactg taaaccttng acgatcacca      5280
     tctgttacta ccttgccatg tttggttggg tctttgcttc gttctcctta tcgtttggct      5340
     agtttggtta ctttcctttc tgttccctat ttgtgttcat ttcattttat tcaggtcaca      5400
     cgtatcgcct aattatcttg tacgggcgct aaagacctag ttgtcgtgcg cccataacat      5460
     catatccatc catccatcca ttca                                             5484
//
ID   Nimb-13_LMi repbase;    DNA;    INV; 5985 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5985
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3172-3172 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1925
FT                 /product="Nimb-13_LMi_1p"
FT                 /translation="MKRASNSVATRKPGVSKRGKRDFNAAQYDPQSFPSLA
FT                 TPWEERRARDRNEAYSPKFLVCTRTDGESFKDTKPLFFVENLEDRYGEVAG
FT                 MSKMRSGSILIETASSAQSKALLACDKLGDVPVSITPHNSLNMTQGIIFHR
FT                 DLLLQSDDELRANLARRGVHFIRRIYRGPKDKKVATGAFILAFEGDSLPEK
FT                 VKVMIYRCDVKPYIPPPMRCFKCWKFGHMSSRCTFSPTCRDCGRPSHPDAP
FT                 CTPPPVCVNCGQHHPPCSPDCTVLHKERKIMEYKTMDKVSYTEAKKKYERL
FT                 HPVALKSSFATITSSPLSSGTMAPTPWIPPVGPQGRPTPPAPIMVGGSSSS
FT                 PAPARPSVGAHPPKPSGTTVPVTQPEKQHLPPAPLARKGSLGTLSSEASQS
FT                 AAEDPSQRLTDPHVRGQRASQSASGPDTVSEKPSRPLKPKGQREDKKQKQK
FT                 KKDSSVALKPHLRTSSASDDEIELLTSAEDLAVINSSETMVLDSVGSPQRQ
FT                 QMNLWNEVF"
FT   CDS           1915..5649
FT                 /product="Nimb-13_LMi_2p"
FT                 /translation="MRCFSCPFMAFNRKDCILQWNCGGFFPRLAELRQLLS
FT                 ASPVFCIALQETWFPMMRTPALRGYRGYYRNRADCDRASGGVCTYVLSSVY
FT                 SEAVPLQTPLEAVAVRVRAAADITICNVYLPPDREVPQHVLAALIAQLPPP
FT                 YLVLGDFNAHNPLWGGTVITGRGRDVESLLSQLDLCLLNDGTPTHFSVAHG
FT                 TYSAIDITVCSPSLFPSVHWRVHDDLCGSDHFPIFLSLPQRQSPERLPRWA
FT                 LDKADWDIFNSAAIVGSPTHPNIDVVVDGVTSAIISAAECAIPISSGSPRR
FT                 KTVPWWSPEIADAIRDRRRALQRHKRHPSLXNLIVFKRLRARARQLIKRRK
FT                 QECWERYVSTIGSRTSPSQVWTKIRRVYGYQRPFSVPGISINGAVCTDPQA
FT                 VAEHFAVHYMQNSASVHYPPAFRTLKEREERKRLSFSARPVELYNAPFSEW
FT                 ELLSALTLCPDTAPGPDRVHNRMLKHLSEESKHHLLALFNRIWSDGVFPSQ
FT                 WRESTIVPVLKPGKHPHELDSYRPISLTNALCKLLERMVSRRLCWLLESRG
FT                 LLSPCQGGFRKGRSALDNLVHLESAIRTAFARRQHLIAVFFDLSKAYDTXK
FT                 AYDTTWRHHILRTLHGWGLRGSLPIFIKNFLXLRTFRVQIGASRSSLHIQE
FT                 NGVPQGSVLSVPLFLVAINGLAAAVGSSVSPSLYADDFCIYFSSSSMRVAE
FT                 RQLQGAIRKAQAWALSHGFQFSAAKTCVMHFCRRRTVHPHPELYLDDQLLN
FT                 VVETHRFLGLVFDDRLTWLPHIRQLKQKCWQHLNALRCLSNTTWGADRSTL
FT                 LQCYKALVLSRLDYGSVAYGSASPSALQMLDPIHHCGVRLATGAFRTSPVN
FT                 SLLVEAGVPPLHIRRQQLLANYAATVRGLPNHPNHRLLFPLTXLHIPQRRP
FT                 RSGLTVGVRVRSLLSQLESVPVPSLFRYQSRTPPWCIRRPXLRLDLSRYSK
FT                 TSVHPETLRRXFLSIXDGFRGSTVVYTDGSMVDGHVGFAYTLAGHNELRSL
FT                 PDGCSVFTAELVAIHRALQRIRSCPGESFVICSDSLSGLQAIDQCFPRNLL
FT                 VVAIHESLYTIEQRGQSVAFLWTPGHVGIDGNELADRLAKEATHKPVLNIG
FT                 IPSADLRSTLRRKVLGLWSSEWRTLQVPNKLRRIKETTNVWRTSLRAPRRD
FT                 SVVLCRLRIGHTWLTHGHLLRREDPPECRCGARLTVVHIVLECPDLAAQRR
FT                 NFNLPDDLXLVLADNASMADAVLNFIRVSGLYRSI"
XX
SQ   Sequence 5985 BP; 1280 A; 1686 C; 1472 G; 1524 T; 23 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaanaaaaaa aaaacacctc       240
     aatctcaagg tgtgctacgt gccgaggaga tgcatggctg ttgaggttga acagtcgcta       300
     gcgagcaacc tctgaggaac ctgccgcacc tcagttgtat aaggcttacc caggcaagcg       360
     gggctctgcc tgggtggacc tttagatccc tagctgctcg tgggancana atgaaacgag       420
     ctagtaatag cgtcgccaca cgcaaacctg gcgtctctaa gagaggnaaa agggacttca       480
     atgcagcaca gtatgatccc caatcgttcc cttcccttgc cacgccatgg gaagaacgac       540
     gggccagaga tcgtaatgaa gcgtactcac cgaaatttct cgtgtgcaca cgtactgatg       600
     gggaatcgtt caaggacacg aagccgctat tctttgttga gaatcttgaa gatcggtatg       660
     gagaagtcgc aggcatgtca aaaatgagga gtgggtccat tctcatagag acagcatcct       720
     cagcccaatc gaaggcacta ctcgcctgcg ataagctggg agatgttcct gtctctatca       780
     cccctcacaa tagtttgaac atgacccagg ggattatctt ccaccgtgat cttctcctgc       840
     agtccgatga tgaactacgc gccaacctcg cacggcgggg tgttcacttt atcaggcgca       900
     tctacagggg gccaaaggat aaaaaggtag ccaccggtgc tttcatcctg gcctttgagg       960
     gcgattcttt gcccgaaaag gtcaaggtta tgatataccg gtgcgacgta aagccttata      1020
     tccctccgcc tatgaggtgc ttcaaatgtt ggaagtttgg ccacatgtca tctcgttgca      1080
     cctttagccc cacatgcagg gattgcggac gtccatccca tccggacgct ccgtgtactc      1140
     ccccacccgt atgtgttaac tgtgggcaac accacccgcc ctgttctccg gactgcacag      1200
     tactccacaa agaaaggaag ataatggagt acaagacgat ggacaaagtg tcttatactg      1260
     aagcaaagaa aaagtatgag cgccttcacc ctgtagcatt gaaatcgtcg ttcgctacta      1320
     ttacttcgtc cccactgtct tcagggacga tggccccaac accttggata cctcctgtgg      1380
     gcccccaggg ccgtccgact cctcctgccc ccataatggt tgggggatct tcttcatctc      1440
     ctgctcccgc acgaccttct gtgggagcgc atccccccaa accgtcgggg acaacagtcc      1500
     ccgtcaccca gccggagaag caacatcttc ctccggctcc tctcgctcgg aaggggtccc      1560
     tcgggacgct ctcttccgag gcctctcaga gcgccgcgga ggatcccagc caacggctga      1620
     cggatccgca cgttcgtggt caaagggctt cgcaatctgc gtcgggccct gataccgtgt      1680
     ctgagaagcc ctcccggccc ttaaaaccaa aagggcagcg agaggacaag aagcagaaac      1740
     agaagaaaaa ggactcttct gtggcattaa agccacacct tcgtacatct tctgcttctg      1800
     atgacgagat tgagctcctt acntccgctg aggatctcgc cgtcatcaac tcctcngaaa      1860
     caatggttct ggattctgta ggttcaccgc agcgccagca gatgaaccta tggaatgagg      1920
     tgttttagct gtcccttcat ggcctttaat cgaaaagatt gtatactcca gtggaattgc      1980
     ggtggttttt tcccccgctt agctgagcta cgacaacttc tcagcgcttc acctgtgttc      2040
     tgcattgccc tgcaggaaac ttggtttccc atgatgcgca cccccgcctt acgtggctat      2100
     cggggttact ataggaaccg tgcagactgt gatagggcgt caggtggagt ctgcacctac      2160
     gtcctntcct ccgtttacag tgaagctgtt ccactacaga cgcctctgga agccgtagct      2220
     gtcagggtaa gggctgcagc tgacattacc atctgcaacg tgtacctccc tcctgataga      2280
     gaagtacccc aacatgtgct ggctgctctg attgcccaac tgcccccacc ttacttggta      2340
     ttgggcgatt tcaacgccca taacccattg tggggtggta ccgtgattac tggccgtggt      2400
     agagatgtcg agtccttact atctcaactc gacctctgcc ttttaaatga tggtaccccc      2460
     acgcatttta gtgtggcgca cggtacctac tcggccatcg acataacagt ntgcagccct      2520
     agcctcttcc catctgtcca ctggagagta catgatgact tgtgtggtag tgaccacttt      2580
     ccgatcttct tgtcactacc ccaacgtcag tcccctgaac gattgccccg atgggcgctt      2640
     gataaggctg attgggacat ttttaactct gctgccattg ttggttctcc aacgcatcct      2700
     aacatcgatg tggtagttga cggcgttacc tcggccatta tttctgcggc tgagtgtgct      2760
     atccccattt cttcgggatc accccggcgg aagaccgtgc cctggtggtc gccagaaatt      2820
     gctgatgcca ttagagaccg caggcgcgct ctgcagcgtc acaaacggca cccgtctctg      2880
     ganaatctca ttgtttttaa acggcttcgt gcccgagccc gccaattgat taaaagacgc      2940
     aagcaggagt gctgggagag gtatgtgtct accatcggct cacgtacctc tccatcccag      3000
     gtgtggacga agatcaggcg tgtttacggt taccagcgnc ctttcagtgt acctgggatt      3060
     tccataaacg gagcagtctg tactgatcca caggcagttg cggaacactt cgctgtgcac      3120
     tacatgcaaa attcagcttc tgtgcattat ccaccagcct ttcgcaccct gaaagagcgg      3180
     gaggagcgna agcggctctc cttctcggct cgccctgtgg agctgtataa tgcccccttc      3240
     agtgaatggg aactgcttag tgcccttaca ctctgccctg acacagcccc tgggccagac      3300
     cgcgtacaca accggatgtt gaagcacttg tccgaagagt cgaagcacca tctgctagcc      3360
     ctgtttaacc gcatttggag cgatggtgtn tttccctctc aatggagaga gagcaccatc      3420
     gtcccggtgc tcaaacctgg caaacacccg cacgaattgg acagctacag acccatcagt      3480
     ctcaccaacg ctctttgcaa attgctagag cgtatggtga gccgccggct atgctggctc      3540
     cttgagtctc gcggtctact gtctccatgt cagggtggtt tccgcaaagg acgctcagcc      3600
     ttggacaacc ttgtncacct tgagtccgct atccggacgg ctttcgcnag acgccagcat      3660
     ttgatagcag tcttttttga tttgtccaag gcttatgaca cgnccaaggc ttatgacacg      3720
     acctggcgac accacattct tagaacatta catggttggg gccttcgggg ctcgctcccc      3780
     atttttataa aaaacttttt ancactgcgt acattccgtg tacagatcgg cgcatctcgt      3840
     agttcgttgc acatccagga gaatggggtt ccacagggct ccgtgttgag tgttcccttg      3900
     tttttagtcg ctattaatgg cctagcggca gcagtaggtt cgtcagtatc tccctcctta      3960
     tatgctgacg acttctgcat ctatttcagc tcctcaagta tgcgtgttgc tgaacgccag      4020
     ctgcagggag ccatacggaa ggcacaggca tgggcactct cccacggttt ccagttctct      4080
     gccgccaaga cgtgcgttat gcacttttgt cggcgtcgaa ctgttcaccc acatccagag      4140
     ctctaccttg atgaccagct acttaacgta gtggaaacgc atcgtttctt ggggttagtg      4200
     ttcgacgacc ggctgacatg gcttccccat attcgtcagc tcaagcagaa gtgctggcag      4260
     caccttaatg ccctccgctg tcttagcaac accacttggg gagcagaccg cagtacgctg      4320
     ctgcagtgct ataaggcgct tgttctgtcc agactggact acggcagcgt tgcctatggc      4380
     tcggcatcac cttcagctct gcagatgttg gacccaatcc atcactgtgg ggttaggctt      4440
     gcaacaggag cctttcgaac gagccctgtg aatagtctcc ttgtggaggc cggtgtgcct      4500
     cctctgcata tcaggcgnca acaactgctt gcaaattatg ctgctaccgt ccgtggttta      4560
     cctaaccacc caaaccaccg tctactcttt cctctaactg anctccacat tccgcagagg      4620
     cggccgagat cagggttgac agttggtgtc cgtgttaggt ctctactgag tcaattggag      4680
     tctgttcctg tcccctcttt attcagatac cagtcgcgta caccaccatg gtgtatacgg      4740
     cggcctnacc ttcggctgga cctgtcacgg tactctaaaa cctcagtcca ccctgagacc      4800
     cttcgtcgcc anttcctatc aattnttgac ggcttccgag gctctacggt agtgtacacc      4860
     gacggctcga tggtagatgg tcatgtcggt tttgcttaca cgcttgcagg acacaatgag      4920
     ttgcgctccc tgccagatgg ctgcagtgta ttcactgcag agctggtagc catccaccgc      4980
     gcacttcaac gtatccgttc ctgccccggg gagtccttcg tcatttgtag tgactccctg      5040
     agcggtttac aggccatcga ccagtgtttt ccgcgcaatc ttttggttgt tgccatacac      5100
     gagtccttgt acaccattga acaacgtggg cagtcagtgg cattcctttg gactccggga      5160
     cacgtcggga tagacggcaa cgagctggct gacaggctgg ccaaagaggc cacccacaag      5220
     cctgtcctca atataggcat cccatctgct gatctccgtt ctacactacg ccgtaaagtt      5280
     ctcggtttgt ggagtagtga atggcgcacc ctacaggtgc ccaacaaatt gaggcgtata      5340
     aaggagacaa ccaacgtgtg gaggacctct ctgcgggccc ctcgcagaga ctctgttgtt      5400
     ctctgccggc tgcgtatcgg ccatacttgg cttacgcacg gccaccttct ccgtcgcgag      5460
     gatcctcccg agtgtcgatg cggtgcgcgt ctgacagtcg tccacatcgt cttggaatgc      5520
     ccggatttag ccgctcagag gaggaatttt aatctccctg acgatttaaa ncttgtttta      5580
     gctgacaatg cctctatggc tgacgctgtt ttaaatttta ttcgtgtgag tgggttgtac      5640
     cgatctattt gattttttgt acagtgttca ttatatattt gttctccgct cgcctaccgc      5700
     ttttaggcag gtggttttaa tgtgcaaaag cggccagatg ccctactacc ttgtctgtgg      5760
     tcacctggcc aggacactct ggtatcgtct ttccaccttt ctcttctttt atcagttttt      5820
     actttgattc ttttatttct tgacgtgtta cacactttgc ttggtgagtt ttaacacatc      5880
     gttttatact acattgtagt gctttttatt ctantctcta cggttggaac aagggactga      5940
     taaccgtagt cgtttagtcc ctttaaaaat caaaccatcc atcca                      5985
//
ID   Nimb-14_LMi repbase;    DNA;    INV; 6617 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6617
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3173-3173 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2218..5913
FT                 /product="Nimb-14_LMi_2p"
FT                 /translation="MAHQLGENSILQWNCGGLFRHIAELRQLLCRYPAFCV
FT                 VLQETWIPAQRTPALRGYRGYFKNRVDYDRVSGGVCVYVLATVPSAPVPLH
FT                 TTLEAVAVRIRALQXITVCSLYLPPDEVVSPADLTALVAQLPPPFLLLGDF
FT                 NAHHPLWGGSQTSARGRXVEALLAQQDVCLLNTGAPTHFSVAHGTYSSIDL
FT                 SVCSPSLLPHLSWSVHDDLCGSDHFPVILSHLDFHPAARPPRWCLRRADWR
FT                 GYTSTAVVPAPLPADTDMAVQQITTAIVSAAEANVPTTTGSPRRKSVPWWT
FT                 SEIAEAIRDRRRALQRHRRRPTLENLIAFKRLRARARRLIRQSKQDCWERY
FT                 VASIGSRASPSRVWSQVRRLFGYRPPAGIPSLNIEGTLCTDPXVIAECMAE
FT                 HYARCSATANYSASFRSLKQRVERTRLSFSTRRREPYNAPFTEWEFQTALD
FT                 ACPDTTPGPDRIHSQFVRHLSAEFQTKLLALFNSVWAGGVFPSQWRDSIIV
FT                 PVMKPGGDPLAVDSYRPISLTNVLCKLLERMVSRRLMWVLEDRCLLAPQQG
FT                 GFRQGRSSIDNLVSLESAIRTAFSRREHLVAVFFDLRKAYDATWRHHILAT
FT                 LYDWGLRGPLPIFIQNFLSLRTFRVRVGTSLSSPRVQENGVPQGSVLSVPL
FT                 FLIAINGLAAAVGSSVSCSLFADDFCLYYSSPSIGVAERRLQGAIRKAQSW
FT                 ASAHGFTFSASKTRVVHFCRRRAVHPDPELYLADEQLRVEETHRFLGMLFD
FT                 NRLTWGPHLRQLKQKCWRYLNILRCLSHTTWGAGRQTLXHLYKALIQSRLD
FT                 YGSQVYDSAAPSALRILDPILHGGVRLATGAFRTSPVPSLLAEAGIPPLRY
FT                 RRQQLLASYVAHVHATPHHPNRRLLFPNTALPSPQRRPRSGHPIAVRVRGL
FT                 LSSLEXLPLPIAFSCHSHIPPWSIPRLQLHLQLSCDPKASVPPHILRHQFX
FT                 DILGAFGDAEVIYTDGSQVDGRVGYAYVHGDHSEQRSLPPGCTVFTAELIA
FT                 ILRALDHLRACPRKSYVICSDSLSGLRALDQCFPKHHLVRSIQDSVFTLGK
FT                 SGRSVAFIWTPGHIGIQGNERADQLAKQAIACRRLEIGTPERDIRLGLHHK
FT                 ISVAWDREWSTLSTPNKLRAVKPSTAAWKTSLLPSRRDSVVLCRLRIGHTW
FT                 LTHGHLLRREDPPDCRCGALLTVVHILSDCPLLAALRQSFTLPSALPSILA
FT                 DDAFMVDRVLGFIRAAGFYHMI"
FT   CDS           join(962..1651,1683..2195)
FT                 /product="Nimb-14_LMi_1p"
FT                 /translation="MSKMRSGAVLIEAASPAQSRALLACDKLGDVPVTITP
FT                 HKSLNMVQGIIFHRDLLPQSDDELRADLERRGVHFVRRVYRGPKDNKVATG
FT                 AFILAFEGDSLPEKVKVMIYRCDVKPYIPPPMRCFKCWKFGHMSSRCNSSS
FT                 TCRECGRPSHPDAPCAPPPVCVNCGQHHPPCSPNCTMLHKERKIMEYKTMD
FT                 KLSYNEAKKKFERLHPVALKTSFATVASSPFLRCRRSPCLSSISPLDGWGL
FT                 STMCCPQYTSWGAHPPSGTTVPVTQPEKQHLPPAPLARKGSLGTLPSEASQ
FT                 STTEGPSQRLSDSHTPGRRAPRSTSGPDTISEKPSQSLKPKGQREDKKKKP
FT                 KKKDSSVALKPRHPTSSASDDELEILASPEDLAILNSPEPMVLDPADSEQL
FT                 AADTPAE"
XX
SQ   Sequence 6617 BP; 1397 A; 1933 C; 1584 G; 1668 T; 35 other;
     aggtgtggca ctgcgtatca ccagaccatc tggttccaac atgatttcta accagtccgc        60
     tattcatgtt acacccngca gcacttcagg tgnagacagt tatttgctgc aatgtatttt       120
     gatatccttc acaaaatctg ttgtctttat cctaagtata tgaaagtgca ttgttgtacg       180
     taccctcgca tgatatgtat tgttttacgt atttttgcat tgatatatta cacttttgna       240
     acataaaaat gtattttact tttcagtatc agcttcgaat aaatctctag tgcttccact       300
     ctgacccctc aggggctcag cattaatttg ctgagtacgg gcttggcgaa cccggggtcc       360
     tgagccgtgg gctgtgtcgc gccaacagtc cgctacaccg taagctctgt gcgtgcttca       420
     acgaccatcg ttcggcgcga cggtggaacg ttgtacgttt cagagcccgg ggatcttggc       480
     ttaatcgccc gggtcgcgag gacggtacaa acctctataa aaaaaaacct caatctcaag       540
     gtgtgctacg tgccgaggag atgcatggct gttgaggttg aacagtcgct agcgagcaac       600
     ctctgaggaa cctgccgcac ctcagttgta taaggcttac ccaggcaagc ggggctctgc       660
     ctgggtggac ctttagttcc ctagctgctc gtgggaccan natgaaacga gcnaaaagcg       720
     ttgccggncg caaaancggc gtctctaagc gtggtagaag tgaattcaat gccgcacaat       780
     atgaccccca atcgttccct tccctagcca ccccatggga ggaacgacgg gcgaaagaca       840
     gggttgagcc atactcccct aaatttcttg tctgcgccag aactgatggg gaanctttca       900
     gtaatactaa gccactcttc ttcgtggaaa cttagaagat aagtatggcg aagtcttagg       960
     natgtctaag atgagaagcg gtgcagtcct cattgaagcg gcatccccag cacagtcacg      1020
     ggcactnctg gcctgcgata agctgggaga tgttcctgtg actatcaccc ctcacaagag      1080
     tttaaacatg gttcagggga ttatcttcca ccgtgatctc ctcccgcagt cagacgacga      1140
     gctncgcgcc gaccttgaac gacgaggtgt ccacttcgtc aggcgcgtct atagggggcc      1200
     taaggacaac aaggtagcca ccggtgcctt catcctggcc ttcgagggcg attctttgcc      1260
     cgaaaaggtc aaggttatga tataccggtg cgacgtaaag ccttatattc ctcctccgat      1320
     gcggtgcttc aagtgctgga aatttgggca catgtcctcc aggtgcaatt ccagctccac      1380
     ctgtagagaa tgcgggcgtc catcccatcc ggacgctcct tgtgctcctc ctcctgtntg      1440
     cgtgaactgc ggacagcacc accccccttg ctcgccgaac tgcacgatgc tccataaaga      1500
     aagaaaaatt atggagtaca agaccatgga taaactgtcg tacaatgagg ccaaaaagaa      1560
     gttcgagcga ctgcaccccg tagcactgaa gacgtcgttt gcgaccgtcg cgtcgtcacc      1620
     tttccttcgg tgtcggcggt ccccatgtct ttgacaactt ctgtgggccc tcagggccgt      1680
     aaagctccat cagccccctc gacggttggg ggctctccac catgtgctgc ccccaataca      1740
     cctcctgggg agcacatccc ccatcgggga caacggtccc cgttactcag ccggagaagc      1800
     aacaccttcc tccggctcct ctcgctcgga aggggtccct tgggacgctc ccttccgagg      1860
     cctctcagag taccacggag ggtcccagcc aacggctgtc ggactcgcac acccctggtc      1920
     gaagggctcc gcgctctacg tcgggccctg acacnatctc tgagaagccc tcccagtcct      1980
     taaaaccaaa aggacagcga gaggacaaga aaaagaaacc aaagaaaaag gattcttctg      2040
     tggctctaaa gccacgccat cccacatcat ctgcttctga cgacgagttg gagatcctcg      2100
     catcccccga ggatctcgcc attctcaatt cgccagaacc tatggttctt gacccagcag      2160
     attccgagca gttggcagca gatactcctg cggaataagc tgccttgctt tcaatccatg      2220
     gctcatcagc tcggtgaaaa ttccatcctc caatggaatt gcggcggtct tttccgccat      2280
     attgctgagc tgcgacaatt actgtgccgc tacccagcat tttgcgtagt cctgcaggaa      2340
     acatggattc ctgcccagcg gacccctgcc cttcgcggct atcggggtta ttttaaaaac      2400
     cgtgtggact acgacagggt ctctggaggt gtntgcgtct acgtcctcgc tactgtcccc      2460
     agtgcccccg tgcctctcca cactacccta gaggcagtgg ctgtcaggat cagagcgcta      2520
     caaganatca ctgtctgctc tctttaccta cccccagatg aggtagtttc tcccgctgac      2580
     ctcactgcct tggtcgcgca gcttccccct ccatttctcc tgttggggga cttcaatgcc      2640
     caccaccctt tgtggggtgg ttctcagacc tcggcgcgtg gtagggangt tgaagctttg      2700
     ctggcgcagc aggatgtgtg ccttttgaat actggtgctc ctacgcactt cagcgtcgcg      2760
     catggcacat attcttccat agatctatcc gtatgtagcc caagccttct gccacatctt      2820
     agttggagtg tccacgacga cctttgcggt agcgatcact tccctgtcat tttgtcgcac      2880
     ttggattttc accctgcagc ccgcccgccc cgntggtgtc tccgtcgagc tgattggcgg      2940
     ggttacacct cgactgctgt ggtccctgct ccactaccag ccgacacgga tatggcggtt      3000
     caacagatca ctactgccat agtttctgct gccgaggcca atgttccgac cactactggc      3060
     tcccctcggc gcaagtctgt gccctggtgg acgtcggaga ttgctgaggc catccgagac      3120
     cgtcggagag cgctgcaacg ccaccggcgc cgtcccacat tagaaaattt aattgccttt      3180
     aaaaggctac gggcccgagc ccgacgactc attcgacaaa gcaagcagga ctgttgggag      3240
     aggtacgtcg cctccatcgg ttctcgcgcc tccccttctc gcgtctggtc tcaagtacgg      3300
     cgccttttcg ggtaccggcc accggcggga atcccgtctc tgaacatcga gggcaccctc      3360
     tgtactgacc cgnccgtaat agccgagtgc atggcagagc attatgcacg ttgctccgcg      3420
     acggcgaact atagtgcgtc cttccgctcc ctcaaacagc gggtagagcg gactcggtta      3480
     tctttctcta cgcgccgccg ggaaccgtac aatgctccgt ttacagagtg ggagttccaa      3540
     actgctctcg atgcatgccc cgataccacc ccggggccag accgcataca cagccagttc      3600
     gttcgtcacc tgtcagcgga attccaaacc aaattgctcg ccttgtttaa tagtgtctgg      3660
     gcagggggtg ttttcccatc ccagtggagg gatagtatca ttgtccccgt gatgaaacca      3720
     ggtggagatc cgctggcagt tgacagttac cgccccatca gcttaactaa tgtactgtgt      3780
     aagctgcttg agcgcatggt gagtcgccgg cttatgtggg tactcgaaga tcgatgtctc      3840
     ctggccccgc aacagggggg tttccgtcag ggtcgctcca gtattgacaa tctagtgtca      3900
     ctggagtctg ccatccgaac ggccttctct aggcgtgagc acctagttgc ggtctttttt      3960
     gacctccgga aggcgtatga cgctacctgg cgccaccaca ttcttgcgac attatatgac      4020
     tggggcttac ggggtccact ccccattttt atccagaatt tcctttcgct ccgcactttc      4080
     agggttagag ttggtacctc cctcagctcc ccccgagtcc aggagaacgg cgtcccacaa      4140
     ggctccgttc ttagtgtacc gctcttttta attgcgatca acggtctagc agcggcagtt      4200
     gggtcatcgg ttagctgttc tttatttgcc gatgactttt gcttatatta cagctctcct      4260
     agcattggtg tcgctgaaag gcgtctgcag ggagccattc gaaaggcaca gtcatgggcc      4320
     tcagcncatg gcttcacctt ctccgcttcc aaaacccggg tcgtacactt ctgtcgtcgt      4380
     cgggccgttc accctgaccc agaactctat ctagctgacg aacagcttcg cgtcgaagaa      4440
     acacaccggt ttctcggcat gctgtttgac aaccggctga cttgggggcc gcaccttcgt      4500
     cagttgaagc agaagtgctg gaggtattta aatatactgc gatgtctcag ccacactacc      4560
     tggggagctg gccgtcaaac tctcntgcac ctctacaagg ccctaatcca atcacgcctg      4620
     gattatggga gccaggtgta tgactctgcg gcaccttcng cattgcggat cttggatccg      4680
     attcttcatg gtggtgtacg tttagcgacg ggggctttcc gcaccagccc tgtgccaagc      4740
     ctcctcgccg aagctggcat ccctcccttg aggtaccgcc ggcaacagct gttggcttcc      4800
     tacgttgccc acgtccacgc tacgccgcac catcccaatc gcaggctntt gtttccgaat      4860
     accgcccttc cctctccaca gcgtcgaccc agatcgggtc atccgatcgc ggtccgcgtt      4920
     cgtggtctcc tttcctcact cgagncccta cctctcccta tcgcattctc ctgccactcc      4980
     catatccctc cttggtccat ccctcgccta cagctccacc tacaattgtc ctgcgaccca      5040
     aaggcgtcgg ttccaccgca catacttcgt caccagtttc nggacatact tggcgcgttc      5100
     ggtgatgcag aagtaatata tactgatggc tcccaggtag atggcagagt gggttacgcc      5160
     tacgttcatg gcgaccacag cgaacaacgc tccctgcccc ctggctgcac agtctttacg      5220
     gcagagctga tcgcaatact tcgagccctc gaccatctcc gtgcatgccc caggaagtcg      5280
     tatgtcatat gcagtgactc cctgagtggc ttgcgagctc ttgaccagtg tttccccaaa      5340
     caccacttgg tgcggtccat ccaagactcc gtgttcactc ttggcaagtc cggccgatct      5400
     gtggccttca tctggacccc gggccacatt ggcattcagg ggaacgaacg tgctgatcag      5460
     ctggccaagc aggcaatcgc ctgccggcgc ctggaaatcg gtaccccaga aagggatatc      5520
     cgattgggtc tacaccacaa gatctccgtg gcctgggacc gtgaatggtc aacgttgagc      5580
     acgccaaata agctccgtgc ggttaaaccg tcaacngcag cttggaagac ctccctcttg      5640
     ccttctcgaa gggactcggt cgtcctctgt cgcctgcgta taggccatac atggctaacg      5700
     cacggccacc tcttacgacg tgaggaccca ccggactgcc gttgtggcgc gctgctgacc      5760
     gtggtccaca tcttgtcgga ctgtccgctt ttagctgcat tgcggcagtc ttttaccctn      5820
     ccttctgcgc ttccttcgat tttagccgac gatgccttca tggttgaccg tgttttaggt      5880
     tttattcgcg cagctggntt ttatcacatg atttaatggt ggcaccccaa gctcgatctt      5940
     tcaggcgccc gccattcaaa cagttttaat ctgttgtcac tttcgtctcg ctagtcattt      6000
     tttaattggc agttttagta cgcgcagaat ggctggctca tccattatta ccctagtgat      6060
     cagccagccn caatcttctg ctgtgntgtt ttaacaacgt tgcttatttg atcnacaact      6120
     tttatggttt tcctttttat gttgccattt tagcgcccct tgtcccttca tcatcctgtt      6180
     aaatgggcta tgaagtgctc gttttccaac ggataaccat attnagtgaa ctcttcgcta      6240
     ggaacggggg actgataacc cagtcgttta gccccccttt aaaaaccccc aacaacaaca      6300
     acaacccttg tttcaactga acagaataat ntccagattt naataacagg aagtnaaaaa      6360
     agtttttcat tgatcctact ccattttaag atgtgttcaa atttcaatgt tatgaaacac      6420
     attttcctgt tgtaattaat tcttaattac atttaaaaaa tctataaatt tatcaaaatt      6480
     ggcaatgcag agagtaaaaa aagagcaatt tgggagggtt cctttttgtg aagcttaagc      6540
     taaacatttg aacattttga atgtttattc acctacttat ctgagcacct tcttcatctc      6600
     ctcaaagaac agcacaa                                                     6617
//
ID   Nimb-15_LMi repbase;    DNA;    INV; 5787 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5787
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3174-3174 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           382..1488
FT                 /product="Nimb-15_LMi_1p"
FT                 /translation="MKRXNKSVAGRXXGVSKRGRGDFNAAGYDPRSFPSLA
FT                 TPWEERRARSQGESYAPRYLVCSRTDGESFASTKPLFFVEHLEDKYGEVEG
FT                 MSKMRSGSVLITTSSPAQSRALLACEKLGDVPVTVTPHKSLNMVQGIIFHR
FT                 DLLLQSDDELRSNLERRGVHFIRRIYRGPKDNRVATGAFILAFEGDTLPEK
FT                 VKVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCEANPTCRECGRASHPDVP
FT                 CVPPPVCVNCGQHHSPCSPDCTVLHKEXKIMEYKTLDRLTYSEARRKYTKL
FT                 HPVTMGKTFATAVQPMSTLPXLTPSAQVISVGPQAQSSTLPPPLDSWGRIF
FT                 LYCSQTLYLGSNTTPTNGDTGPRPRA"
FT   CDS           1921..5592
FT                 /product="Nimb-15_LMi_2p"
FT                 /translation="MSSQLSESVILQWNCGGFFTHLAELRHLLSITPAFCI
FT                 ALQETWFPAMRTPALRGYRGYYCNRSVYNRVSGGVCVYVLTSVYSESVPLQ
FT                 TPLEAVAVRVRTTQEFTVCSLYLPPDGDVSQNVLAALISQLPPPFLLLGDF
FT                 NAHNTLWGGSTISGRGRVVEDLLSHLDLCLLNTGAPTHFSVAHGTFSAIDL
FT                 SICSHSLPPSVHWRAHDDLCGSDHFPIFLSLPQRQSPGRLPRWALHKVNWD
FT                 DFTSAATVGPPPLDNVDVAVECATRSIVSAAEATVPRSSGSPRRKTVPWWS
FT                 PEVAXAIKDRSGLXDRRRALQRHPSLEHLVAFKRLRARARHLIKRRKQECW
FT                 ERYVSTIGTGTSTTQVWSKIRRLRGYPTPAGIPGISVNGVVCTDPATLAEM
FT                 FAEHYAHAFSSANYPPAFRTLKEQVERQPLSFTTRRTEAYNTPFTEWEFLS
FT                 ALKQCPDTAPGPDSIHSQMLKHLSAESQRNLLALFNHIWCDGVFPSQWREG
FT                 IIIPVIKPGKNPVNLDSYRPITLTNVLCKLLERMVSRRLCWILETRGLLAP
FT                 CQGGFRQGRSTTDNLVYLESAIRTAFSRRQHLIAVFFDMQKAYDTTWRHHI
FT                 LSTLHGWGLRGSLPIFIKNFLAVRTFRVQVGASRSTSHVQENGVPQGSVLS
FT                 VPLFLVAINGLATAVGSSVSPSLYADDFCIYFSSSSTHVAERRLQGAIRKA
FT                 QSWALTHGFQFSAAKTSVMHFCRLRTVHPQPELYLGDHLLEVVDTHRFLGL
FT                 VFDSRLTWLPHIRQLKRECWRHLNVLRHLGHTSWGADRSTLLRLYQALAQS
FT                 RLDFGCVAYGSASPSALRLLDPIHHCGVRIATGAFRTSPVASLLAEAGVPP
FT                 LQIRRRQLLAAYAALVHSSSGHPNHRVLFSRVVVHDQRRRPRSGHTIAFRV
FT                 QSLLQELESYPLPPPYRAHARTPPWRLPRPCICLDLARGPKDSVPPEALCR
FT                 QFLAVVARFPGHDLVYTDGSKVESRVGFAXVHDNHVEQHSLPDGCSVYTAE
FT                 LVAISRALEHIRSCSGESFLICSDSLSSLRALDQCYPRSPLVLGIQETLSA
FT                 LDRSGRSVAFLWSPGHVGIPGNERADMLAKQAVDAPVLEIGLPDADLRTVL
FT                 RHRVRELWSTEWRSLATANKLRAIKETTAVWRSSMRACRRDSVVLCRLRIG
FT                 HTWLTHGHLLRGEDPPVCVRPVMTSDWRFPFVSVWLTFPVFSLTVGQPQTS
FT                 AFTFYFLSLLGDXV"
XX
SQ   Sequence 5787 BP; 1156 A; 1718 C; 1502 G; 1394 T; 17 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggagcccggg gatcttggct taatcgcccg ggtcgcgagg       180
     acggtacaaa cctctataaa aaaaaaccct caatctcaag gtgtgctacg tgccgaggag       240
     atgcatggct gttgaggttg aacagtcgct agcgagcaac ctctgaggaa cctgccgcac       300
     ctcagttgta taaggcttac ccaggcaagc ggggctctgc ctgggtggac ctttagttcc       360
     ctagctgctc gtgggaccac catgaagcga ncaaataaaa gcgtggccgg ccgcgnaanc       420
     ggcgtctcta agcgngggag aggagacttc aatgctgctg gatatgaccc ccgttcgttc       480
     ccttccctgg ccacgccatg ggaggaacgt agggccagaa gtcaaggtga gtcgtacgcc       540
     ccccgatact tagtttgctc acgcactgac ggggaatcct ttgcgtcaac taagccactg       600
     ttttttgttg agcatctgga ggacaagtac ggagaggtgg agggtatgtc caagatgcga       660
     tccgggtcag tcttgataac gacgtcatcc ccagcacagt cgcgggcgtt gctcgcctgt       720
     gagaagctgg gtgatgttcc cgttacagta acacctcata agagccttaa catggtccag       780
     ggtatcatct tccatcgaga tctgttgttg caatctgatg atgagctacg gtcgaaccta       840
     gagcggcgng gtgtgcattt catccggcgc atctataggg gtccgaagga caacagggtc       900
     gccaccggtg ctttcatctt ggcttttgag ggtgacacgt tacctgaaaa agtcaaggtg       960
     atgatttacc ggtgtgacgt aaagccctac gtccctcccc ctatgcgctg ctttaagtgc      1020
     tggaggttcg ggcacatgtc ctcccggtgt gaggccaacc ccacatgtcg ggagtgtgga      1080
     cgtgcatcac acccagacgt cccttgtgtc cctcctccgg tctgtgttaa ctgtggccag      1140
     caccattcgc cctgctcacc agattgcaca gtcctccata aagaangaaa aatcatggag      1200
     tataaaaccc tggacagact gacctattca gaggcacggc gcaaatatac caagctgcac      1260
     cccgtgacca tgggtaaaac ttttgccact gcagttcagc caatgtcaac actaccanct      1320
     ctgaccccat ctgctcaggt aatctcggtg ggcccacagg cccaatcatc cactctcccc      1380
     cccccccttg acagctgggg gcggatcttc ctgtattgct cccaaaccct ctacctcggg      1440
     agcaatacca ccccaaccaa cggggacact ggtccccgcc cccgagcctg agaagcaaca      1500
     gccttctctg gctcctctcg cgaggaaggg ttcggttgaa tcccaccctt cctcggcttc      1560
     ctcctctgga accaaagata ccggccagtg gcaaacagtg ccnacgaagg ctggtcgtag      1620
     ggccgcgagg tcctcctcag tcccagagac tgagtcaccg aagccctcca gacgtgagaa      1680
     gccaaaagaa cagcgagagg ctattaaaaa gaaacaaaaa cctgtgaaga ataaagagac      1740
     cccagtggtt cccccactac cgccccngac ctcttcctcc gaggacgagg tgaagatact      1800
     agcgtcccct gaggacctag atctcgaagg accatcggaa acgatggacg tagattccac      1860
     agcttcgcga gcagtgtcag cgagtgatca cgaggtataa caagtacttc atattgcctc      1920
     atgtcatccc agttatcgga aagcgttatt ctccagtgga actgcggcgg ttttttcacc      1980
     cacctggctg aactgcgnca ccttctgagc attacacctg ctttctgcat tgccctccag      2040
     gaaacatggt ttccggcaat gcggacccct gccctccggg gctacagggg atattattgt      2100
     aatcgcagcg tgtataacag ggtatcgggt ggagtgtgtg tgtatgtcct tacttccgtc      2160
     tatagcgaat ccgtgcctct tcaaacgcct ttagaagcgg tggctgtcag ggtaaggaca      2220
     acacaagagt ttaccgtttg cagtctctac ctccctcctg atggtgacgt ctctcagaac      2280
     gttttggctg cgcttatttc tcaactcccc ccacctttct tactactggg cgactttaat      2340
     gcccataaca ccttgtgggg tggttccacg atttctggcc ggggcagagt agtcgaggac      2400
     ttactatctc atcttgacct ctgcctcttg aacacgggtg cccccacaca ttttagtgtg      2460
     gcgcatggca cgttctcggc cattgatctg tctatctgca gccatagcct tccaccatct      2520
     gtccactgga gagcccacga tgacttgtgc ggcagtgacc attttcccat tttcctgtca      2580
     ctcccacaac gtcagtcccc agggcgcctg cccaggtggg ccctacacaa ggttaactgg      2640
     gacgacttta cctctgctgc cacngttggc cctcccccac tcgacaacgt cgatgtggcg      2700
     gtcgagtgcg ccacgcgctc cattgtttca gctgcagaag ctaccgttcc ccgttcgtcg      2760
     gggtccccac ggcgtaagac ggtaccatgg tggtcgccag aggtcgcagn ggctattaaa      2820
     gatcgcagcg gccttanaga tcgccgacgg gccttacagc ggcacccgtc tctggagcac      2880
     ctcgtcgctt tcaagcggct ccgtgcacgt gctcgtcatc tcattaagag acggaagcaa      2940
     gagtgttggg agaggtacgt ctccactatt ggaacaggta cctccaccac ccaggtctgg      3000
     agcaagatca ggcgtttaag gggataccca acaccagcag gaatccctgg gatctccgtg      3060
     aatggagtng tatgtacgga cccagccacg cttgcagaga tgtttgccga gcattatgct      3120
     catgcctttt cctctgcgaa ttacccaccg gccttccgta cattaaagga gcaggtggaa      3180
     cgccagcccc tctcctttac tacccgccgt acggaggcat ataacacgcc atttacagag      3240
     tgggaattcc tcagtgctct taaacagtgt cccgacacgg ctccgggacc cgatagcatc      3300
     cacagccaga tgctgaaaca cctgtcagcg gagagccagc gtaatctcct tgcgctcttc      3360
     aaccacatct ggtgcgacgg ggtattccct tcgcagtggc gggagggtat aatcataccg      3420
     gtgattaaac caggcaaaaa ccctgtcaat ttggatagct atcggcccat caccctgacc      3480
     aatgtcctct gtaaactgtt ggagcgcatg gtcagtaggc ggttgtgctg gatcctcgag      3540
     actcggggct tactggctcc atgccagggc gggttccgcc agggtcgctc caccaccgac      3600
     aacctggtgt acctcgagtc tgcgatccgc acagcctttt ccaggcgcca acatctgata      3660
     gccgtctttt tcgatatgca aaaagcatat gatacgacct ggcgacacca catacttagc      3720
     acgttacatg gttggggtct tcggggctca ctcccgattt ttattaaaaa ctttttagct      3780
     gtccgtactt ttcgtgttca agtaggtgcc tctcgtagta cctctcatgt gcaggaaaat      3840
     ggggttcctc agggctctgt tttgagtgtc cccttatttt tagtagccat taacggctta      3900
     gctacagcag ttgggtcgtc agtatcccct tcactatatg ctgacgactt ttgtatctat      3960
     tttagctcct ccagcactca cgtcgccgaa cgtaggctgc agggagccat taggaaggcg      4020
     cagtcctggg ctcttaccca cggcttccag ttctctgctg cgaagacgag tgttatgcac      4080
     ttttgtcggc ttcgaacggt tcaccctcag cccgaactgt atctcggcga ccacctatta      4140
     gaggtcgtgg acactcatcg ttttttaggg cttgtttttg actcccggct gacgtggctc      4200
     ccccacatcc gtcaactaaa acgggagtgc tggcgccacc tcaatgttct ccgccacctg      4260
     ggccatactt cctggggtgc tgaccgctcc accctgttgc ggctctatca ggctctggcg      4320
     cagtcccgtc tagattttgg atgtgtcgcc tacggttctg cgtcaccctc ggcattgcgc      4380
     ttgctggacc ccattcacca ctgtggggtt cgcatcgcga cgggtgcctt tcgtaccagc      4440
     cctgtggcca gcttacttgc tgaggccggg gtaccacctt tgcagatccg ccgccgacaa      4500
     ctgcttgcag cctatgcagc gctcgtgcac agctcgtcag gccacccgaa ccaccgtgtt      4560
     cttttctccc gcgtggtcgt ccatgaccaa cgacgacgac ccaggtcggg tcatacgatc      4620
     gccttcaggg tccagtcgct gctgcaggaa cttgagtctt acccactacc acctccatat      4680
     cgggcccacg cacgcacgcc tccgtggcgc ctgccaaggc cgtgtatttg cctggacttg      4740
     gcccgtggac ccaaagactc agttccacct gaagctctct gtcgccagtt cttagcggtc      4800
     gtagctcgat tccctggaca cgacctggtt tacacggatg gttcgaaagt tgagagccgg      4860
     gttggttttg cgtncgttca tgacaaccat gttgaacaac actctctgcc ggatggctgc      4920
     agtgtctata ccgcagagct ggtggcaatt tcccgcgctc tcgagcacat ccggtcctgc      4980
     tcaggtgagt cctttcttat ctgcagtgac tccctgagca gccttagagc cctcgaccag      5040
     tgctatccgc ggtctcctct ggtgttggga attcaggaga ccctatctgc ccttgacagg      5100
     tccggtcgat cagtggcgtt cctctggtcc ccgggtcatg tcggtattcc gggcaacgaa      5160
     cgtgctgata tgctggccaa gcaggctgtt gatgcgcctg ttttagagat cggcctcccg      5220
     gatgctgatc tccggacagt gctgcgacat cgagtgcgtg agctttggtc taccgagtgg      5280
     cgtagcctgg caacagccaa caaactcagg gctataaagg agacgacggc tgtgtggcgt      5340
     tcttccatgc gggcctgccg ccgggactcc gtagtcctgt gccggctccg cattggccat      5400
     acatggctga ctcacggcca tctccttcgt ggcgaggacc cgcctgtgtg tgtccgtccc      5460
     gtcatgacct ccgattggag gtttcccttt gtttccgtgt ggctgacttt tcctgttttt      5520
     agtctcacgg tcggtcagcc acagacgtcg gcttttacat tttatttctt gtcgttgctc      5580
     ggtgatnctg tgtgattgtc acggttttng ttgtctcttg ccgactttgt tgtcctttaa      5640
     ctgactcggg ggatattcct ccccctagct gttctcaact ctaggctctt ttacgcgttc      5700
     acgccttttg ttgcgacgcc caacgatgga atgggggact gatgacctcc gtagttttgt      5760
     ccccctaaaa catccaaaca acaacaa                                          5787
//
ID   Nimb-16_LMi repbase;    DNA;    INV; 5951 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5951
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3408-3408 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(659..1900,1884..2204)
FT                 /product="Nimb-16_LMi_1p"
FT                 /translation="MSKMRSGSVLITTSSPAQSRALLACDKLGDVSVSITP
FT                 HKTLNMVQGIIFHRDLLLQSDDELRANLERRGVHFIRRVHRGPKDNRVATG
FT                 AFILAFEGDSLPEKVKVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCDANP
FT                 TCRECGRAVHPNVPCTPPPVCVNCGLNHSPCSPVCTVLHQERKIMEYKTRD
FT                 RLTYSEAKRKYQKLHPVRLVNTYATAASSSSSTVPGLPSVPPMPVGSQAHP
FT                 TVPAPLPAGGTSSSVAPTLFTVGASTPQTSGTPVPTSQPEKVKPPPAPLAR
FT                 KGSLGTPPSEASQGVSEDPGRRPKDPKPAGRRASRSSSTPGATSEKPSQPL
FT                 KPKGQREGRVKKTKKKDSLVARKPQLPSSSASEDELEILTSPEDLALIDSP
FT                 EPMILDSVGSKSAVTSEPMEQVNLWSNLFLLSFQSWPLKPITPSSSGIAVD
FT                 FFPRLAELRQLLSTSPAFCIALQETWFPVMRTPALRGYGVIIGTAQTVIGR
FT                 QVEYAPTSLPLSTAKLFHYGRLWKP"
FT   CDS           join(2435..3304,3336..4112,3884..4813,4639..5487)
FT                 /product="Nimb-16_LMi_2p"
FT                 /translation="TMVPPRILAWHMVPTRPSTFQCVALASSPLSTGVYTM
FT                 ICVVVTTSRFSCHYPASGPERPPRWALNKANWDVFTSAATVGSPTHSNIDV
FT                 VIDSVTSAIISAAERAIPRSSGSARRRTVPWWSPEIAEAIRERRRALQRHK
FT                 RHPSMENLIAFKRLRARARQLIRRRKQECWERYVSTIGSRTSPSQVWAKIR
FT                 RVYGYQCTLSVPGISVNGAVCTDPDAVAELFAEHYAQSSASAAYPRAFRAL
FT                 KEREERQRCPSRLAAQNCTMLHSVNGNSSVPWHTALTQPLGQIASIIRCVL
FT                 AIFNHIWSSGTFPSQWRESLIVPVIKPGKHPHELNSYRPISLTNVLCKLLE
FT                 RMVSRRLCWLLESRGLLTPCQGGFRKGRSAVDNLVHLESAIRTAFSRRQHL
FT                 VAVFFDLSKAYDKTWRHHILTTLHGWGLRGSLPIFIRNFLSLRTFRVQVGA
FT                 SRSSLHVQENGVPQGSVLSVPLFLVAINGLAAAVGHQSPPLCMLMTSVYIL
FT                 ALAVYVLLNDSCREPYARRRHGPSPMGFNSLLPRPALCTSAGVGQSIRIPS
FT                 FTWSSSSGRSSVSTSLYADDFCLYFSSCSIRVAERQLQGAIRKAQTWALAH
FT                 GFQFSAAKTCVMHFCRRRTVHPHPELYIDGHLLNVVETHRFLGLVFDDRLT
FT                 WLPHIRQLKQKCWQHLNPLRCLSNTTWGADRRTLLHCYKALVLSRLDYGSI
FT                 AYGSASPSALQMLDPIHHCGVRLATGAFRTSPVNSLLAEAGVPPLRTRRQQ
FT                 LLCNYIAHVRGLPHHPNHRLLFPVRPLPTPQRRPRSGMTVGVRVRLLLSEL
FT                 ESFPLPPIFQFQSHTPPWCIRRPRLCLELSQHPKTSVHPEAIRRQFRLSLT
FT                 CHGARKTGIFSTTSHLPVPIAYSTMVYPSATPLLGTVTAPQNLSSPRGHSP
FT                 PIPSILDVSRGSEVIYTDGSMVGGRVGYTYTHAGHNELHSLPAGCSVFTAE
FT                 LVAIFRALDHIRTCTAGESYVICSDSLSGLRALDQCFPRHPLIIAIQESLY
FT                 AVEQRGRSVVFIWTPGHVGIAGNELADRLAKEATTKPLLEVGIPSADLRSC
FT                 CAVEPAVCGIQNGIPSRSPTSYGHKGDDERLEVLSTGPSQGRCRPLPAPHW
FT                 PYLADTRSPSPSRGPTSVSLWRRFISRPHFIGLH"
XX
SQ   Sequence 5951 BP; 1268 A; 1703 C; 1469 G; 1511 T; 0 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaccccatct caaggtgtgc       240
     tacgtgccga ggagatgcat ggctgttgag gttgaacagt cgctagcgag caacctctga       300
     ggaacctgcc gcacctcagt tgtataaggc ttacccaggc aagcggggct ctgcctgggt       360
     ggacctttag ttccctagct gctcgtggga ccagaatgaa acgagcaaat aatagcgtcg       420
     ccacacgcaa acctggcgtc tctaagagag gtagaaggga ctacaatgcg cagagtatga       480
     tccccaaacg ttcccttccc tggctacacc atgggaggaa cgtcgggcaa gaaaccaggg       540
     tgaggcttat gcccctaaat atctagtctg tagccgcact gatggggact cctttaagac       600
     gactaagccc ttgttcttcg tggaaaactt ggaggacaag tatggtgagg tggaaggcat       660
     gtcaaaaatg cgctctgggt cggtattaat aacgacgtca tccccagccc agtcacgggc       720
     attgcttgcc tgtgacaagc tgggtgatgt ttccgttagc ataacaccac acaagacctt       780
     aaatatggtg cagggaataa tattccacag agaccttttg ttgcagtcag acgacgaact       840
     gcgtgcgaac ctagaacggc ggggagttca ttttattcga cgagtccata ggggtccgaa       900
     ggacaacagg gttgccaccg gtgccttcat cttggctttc gagggtgatt cattgcccga       960
     gaaggtcaag gtgatgatct accggtgcga cgtaaagccc tacgttcctc cccctatgcg      1020
     ttgttttaag tgctggaggt ttgggcatat gtcctcccga tgtgatgcca accctacatg      1080
     tcgggagtgc ggacgtgctg tccatccaaa cgtcccctgc acccctcctc cagtatgtgt      1140
     caactgtggc ctaaatcact ccccttgttc gcctgtctgc acggttctgc accaggaaag      1200
     gaaaataatg gaatacaaga cccgcgaccg actaacctac tcagaggcaa agcgaaaata      1260
     tcaaaagctc caccctgtgc gcctggttaa cacctatgcc acggcagcct cgtcatcgtc      1320
     gtctacagtg cctggtctac catctgtacc acctatgcca gtgggctccc aggcccaccc      1380
     aactgtccct gcccccttgc cagctggggg cacttcctct tcggtggctc ccactctttt      1440
     caccgtggga gcatcaaccc ctcaaacatc ggggacaccg gtccccacct ctcagccgga      1500
     gaaggtgaag cctcctccgg ctcctctcgc tcggaagggg tccctcggga cacccccttc      1560
     cgaggcttct cagggtgtct cagaggatcc tggccgaagg cccaaggatc ccaaacctgc      1620
     tggtcgaagg gcttctcgct cttcttccac acctggcgcc acttccgaga agccctccca      1680
     gcccctcaaa ccgaaggggc agcgagaggg aagagtgaag aagacaaaga aaaaggactc      1740
     tttagtggct cgaaagccac agctaccctc atcttctgct tcagaagatg agttagagat      1800
     cctcacctca cctgaggatc tcgccctcat cgactcccca gagccgatga tcttggactc      1860
     ggtaggttca aaatcggcgg taacaagtga acctatggag taaccttttt cttttatctt      1920
     tccaatcatg gcctttaaag ccaataacac catcctccag tggaattgcg gtggattttt      1980
     tcccccgctt agctgagtta cgccaactcc tcagcacttc acctgccttt tgcattgccc      2040
     tgcaagaaac ttggtttccc gtgatgcgca cccctgcctt acgtggctat ggggttatta      2100
     taggaaccgc gcagactgtg atagggcgtc aggtggagta tgcacctacg tccttacctc      2160
     tgtctacagc gaagctgttc cactacggac gcctttggaa gccgtagctg tcagggtaag      2220
     ggctgcagtg gacattacca tctgcaatgt ctacctccct cctgatggtg aagtcccaca      2280
     acacgtcctg gctgcactga tagctcaact accccccctt acctggtatt gggtgatttc      2340
     aacgcccata acccattgtg gggtggtacc atgattactg gccgtggtag agatgtcgag      2400
     tcattgctat ctcaactcga cctctgcctt ttaaacaatg gtgcccccac gcattttagc      2460
     gtggcacatg gtacctactc ggccatcgac ctttcagtgt gtagccctag cctcttcccc      2520
     tctatccact ggagtgtaca cgatgatttg tgtggtagtg accacttccc gattttcttg      2580
     tcactacccc gcgtcgggcc ccgaacgccc gcccagatgg gcactgaata aggctaattg      2640
     ggacgttttt acttctgctg ccacggttgg ttctcctacg cactccaaca tagatgtggt      2700
     aatcgacagc gttacctcgg ccattatttc tgcggctgag cgtgcaatcc ctcgctcttc      2760
     gggatccgcc cggcggagga cggtgccctg gtggtcgccg gagattgctg aggcgattag      2820
     agagcgcagg cgagctctgc agcgccacaa gcggcaccca tctatggaga acctcatcgc      2880
     ttttaaacgg cttcgtgccc gagcccgaca gttgattaga agacgcaaac aggagtgttg      2940
     ggaaaggtac gtgtctacca ttggatcacg tacttctcca tcccaggtgt gggcgaagat      3000
     cagacgtgtg tatggctacc agtgtactct tagtgtgccc gggatttccg tgaatggagc      3060
     agtttgcaca gatccagatg cagttgctga actgtttgct gagcactacg ctcagagttc      3120
     tgcatctgcg gcctacccaa gggcctttcg cgccctgaaa gagcgggagg aaagacagcg      3180
     ttgtccttct cgactcgccg cacagaactg tacaatgctc cattcagtga atgggaattc      3240
     ctcagtgccc tggcacactg ccctgacaca gcccctgggc cagatcgcgt ccataatcag      3300
     atgctgaaac acctgtcacc cgagtctcag cgtaagttct ggctatcttc aatcacatct      3360
     ggagttctgg tacattcccg tcacagtggc gagagagtct gatagttcca gtgatcaaac      3420
     ctggtaaaca cccgcatgag ttgaacagct accgaccaat cagcctcacc aacgttcttt      3480
     gcaaattgct agagcgtatg gtgagtcgac gattgtgctg gctccttgag tccaggggtc      3540
     tcctaactcc atgccagggt ggtttccgca aggggcgctc agctgtggat aacctggtcc      3600
     accttgagtc cgccatacgg acagccttct ctcgacgcca acacctggta gccgtcttct      3660
     ttgacttatc taaggcctac gacaagacct ggagacatca catccttact acattacatg      3720
     ggtggggtct ccggggctcg cttcctattt ttatccggaa ttttttatct ttgcgtacct      3780
     ttcgtgtaca agtcggtgcc tctcgtagct ctttgcatgt acaggagaat ggggtacccc      3840
     agggctctgt actgagtgtt cctctatttt tagtggcgat taatggtcta gcagcagcgg      3900
     taggtcatca gtctccacct ctttgtatgc tgatgacttc tgtttatatt ttagctcttg      3960
     cagtatacgt gttgctgaac gacagctgca gggagccata cgcaaggcgc agacatgggc      4020
     cctcgcccat gggtttcaat tctctgctgc caagacctgc gttatgcact tctgccggcg      4080
     tcggacagtc catccgcatc ccgagcttta catagatggc cacttgctca atgtggtgga      4140
     aacacatcgt ttcttgggac tagtgtttga cgaccggctg acatggctcc ctcacattcg      4200
     tcagcttaaa cagaagtgct ggcagcacct taatcctctc cgctgcctta gcaatactac      4260
     ttggggagca gaccgtcgta ctctgctaca ttgttataag gctctcgttt tgtcacgatt      4320
     ggactacggg agcattgcct atggttcagc atcgccttca gccctgcaga tgctggaccc      4380
     aatccaccat tgtggggttc ggctggcgac aggagctttc agaactagcc ctgttaatag      4440
     tctccttgca gaagctggag ttccgccact acgaaccagg cgccaacagc tgctttgcaa      4500
     ttacattgct catgttcgtg gcttgcctca tcaccccaac caccgtctcc tttttccagt      4560
     caggccactt cccaccccac aacggcggcc gaggtcgggg atgacagttg gcgtccgtgt      4620
     ccgtttgctc cttagtgaac tggaatcttt tccactacct cccatcttcc agttccaatc      4680
     gcatactcca ccatggtgta tccgtcggcc acgcctttgc ttggaactgt cacagcaccc      4740
     caaaacctca gttcacccag aggccattcg ccgccaattc cgtctatcct tgacgtgtca      4800
     cggggctcgg aagtgattta caccgatggc tcgatggtgg gtggtcgtgt tggctacact      4860
     tacacgcatg cagggcataa cgaattgcac tccttgccgg ctggctgcag tgtcttcact      4920
     gcggagttag tagccatctt tcgtgctctt gaccacattc gtacctgcac tgctggggag      4980
     tcctacgtca tctgcagcga ctccctcagc ggactaagag ctcttgacca atgcttcccc      5040
     cgccatcctt tgataatagc catccaggag tccctctatg ccgtcgaaca acgcgggcgg      5100
     tcggtagtat ttatctggac tccagggcac gtcgggatcg caggaaatga actggcagac      5160
     aggttagcca aagaggccac cactaaacct cttctggagg tcggtatacc atctgctgac      5220
     ctacgttcat gctgcgcagt cgagcctgcg gtttgtggga tacagaatgg cataccctcc      5280
     agatccccaa caagttacgg acataaagga gacgacgaac gtctggaggt cctctctacg      5340
     ggcccctcgc agggacgctg tcgtcctctg ccggctccgc attggccata cttggctgac      5400
     acacggtcac cttctccgtc gcgaggaccc acctcagtgt cgctgtggcg ccgatttatc      5460
     agtcgcccac attttattgg attgcactaa cctcgccgcc cagaggcgga gttttaacct      5520
     ccctgacgcc ctgagctcgg ttttagcaga caatgcctct acggttgata gagttttaaa      5580
     ttttattcgt gcgagtggat tatatcattc catctgaatt ttattgagtg ttcagtatct      5640
     atctatcctc cacttaccta gcacttttag gtaggtggtt ttaatgtgta acagagtggc      5700
     cggatgttct acttttatta ctgtgatcac ccagccaaga tactctggta tcgtctttaa      5760
     atctttctct cctttctcgg tgttctttct ttgcttcttt tatttcttga cgtgttaaac      5820
     cctttgcttg gtgcatttta tcacattgtt ttatacacct ttttagcgat cattcctgta      5880
     ctctttatac ttggaacaag ggactgataa cctttgtcgt ttagtccctt tcaaaatcaa      5940
     accatccacc a                                                           5951
//
ID   Nimb-17_LMi repbase;    DNA;    INV; 6196 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6196
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3409-3409 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(393..533,482..895,859..1416)
FT                 /product="Nimb-17_LMi_1p"
FT                 /translation="MYPLGCSPLTTQGSLYRCQSCKLLLQARSRCLSLWSI
FT                 RTPGNGHPARMLVAVEHQDSRQWSSRQVTLLWLGGAHEESPCSEWVASGRM
FT                 IRNEAKQIQHQNPGATGVSKRGKFNAATYDPSSFPLLTSSWRERGGRQNEP
FT                 YVPKFLVCSRTDGGSFQATKPMFFVEHIEDKFGEVAGIQKCAMDQFGCGYS
FT                 KMRDGSILIQAESPAQSRALLTCTKLGDVPVSITAHKTLNLVQGVIFHRDL
FT                 LLQSDEELRENLQRRGVHFVRRVFRGPKDNRVATGAFILAFDGDTLPEKVK
FT                 VMIYRCDVRPYIPPPMRCFKCWRFGHMSSRCDAAPTCRDCGRPYIQMPLVP
FT                 HHLSVLTAAATIRLAHRTVPLSKGSARS"
FT   CDS           join(1491..2183,2168..4594,4447..5733)
FT                 /product="Nimb-17_LMi_2p"
FT                 /translation="MMSTYAAATVASPPLGAAARPTITPSVGPLGHQSVSA
FT                 PQTPGGTSSSARLLPPPLTGSLNPVSLPEKCLPSGKGPDEPLPPPPAVPTV
FT                 PDTLDVSRSPPARKGSLEVTLSTAPASTQPDVSQWLKAHAPAGSRASPSAS
FT                 TSDAPSGKPTRASKPKPKRERARKKDVPQEKEPAAKAASSMPSAASSDSDN
FT                 EVEILASKEDLALTDNLDAMDMDTTDPQRVAASDTEAHRVSGASCLLITFM
FT                 PPQSIGSTFLQWNCGGYFSHLAELKQLLSTSHVLCVALQETWLPATRTPAL
FT                 RGYRGFYKNRLAYDRASGGVSIHVINSAYSEAVPLQTPLEAVAVRIRTPLA
FT                 ITACSVYLPPDGDVPRHVLAALIAQLPPPFLIMGDFNAHNLLWGGNVTTGR
FT                 GREVENLVSQLDLCILNTGAPTHFSVAHGTYSAIDLSVCSPGLVPSLHWRV
FT                 HDDLCGSDHFPIFLSLPQRHCPSRLPRWALNKADWDAFKTAATVRSLPETN
FT                 IDVVVDNFTDVIVSAAQSAIPSSSGSSRQRTVPWWSPEIADAIRERRRALQ
FT                 RHKRHPSVANLIAFKRLRAKARQLIKRAKQECWERYVSTLGSRVSPSQVWT
FT                 KIRRLYGHQTPVGVPGLSIHGAVCTDPSVIAEHLADHFARCSASANYSAAF
FT                 RSRMERVERQRLSFATRRQESYNAPFTESELLSALANCPDTAPGPDRVHAQ
FT                 MLKHLSRDSQRHVLDIFNRIWGGGEFPSQWREAVVIPVLKPGRDPLEVDSY
FT                 RPICLTNVLCKLLERMVARRLXWVLESRGLLAPSQGGFRQGRSTTDNLVCL
FT                 ESAVRTAFSRRQHLIAVFFDLQKAYDTTWRHHILATLHEWGLRGSLPIFIX
FT                 NFLRLRTFRVRVGVAHSSPHVQENGVPQGSVLSVSLFLVAINGLAAAVGSS
FT                 VSPSLYADDFCISFCSTTTSAAERRLQAAIRQAHMWAQHHGFQFSAGKTRV
FT                 MHFCRRRTVHPHPELYLDGQLLPVVDTHRFLGLIFDARLTWLPHIRYLKWE
FT                 CGRHLNALRCLGHTTWGLTAPPCCGSIQPWCNRGCPTDLAPSYSLSEMGVR
FT                 APSQRPSMSGSYHMGADRSTLLRLYTALVQSRLDFGCLAYGSASPSALRLL
FT                 DPIHHCGVRIATGAFRTSPVASLLAEAGVPPLWVRRQQLLAAYAARVYSSP
FT                 GHPNYRLLFSTVAVRHQQQRPRSGHTIAVRVQSLLGELESYPLPPPFRARS
FT                 RTPPWCLPRPCLRLDLAHGRKDSVPPEALRRQFFAVVAEHPGYDIVYTDGS
FT                 LVNGRVGFAYVHGDHVEQQSLPEGCSVYTAELVAIFRALEHMRSCSGESFL
FT                 LCSDSLSSLRALDQCYPRSPLVMAIRETVFALVRSGRSVVFLWSPGHVGIP
FT                 GNERADGLAKQAVNASILEIGLPAPDLRSLLRRRVHQLWDAEWRSLSTPNK
FT                 LRVVKETTAVHGAPXCVALAGTQWFCVASALGTRGSPMDISFGVRTRPNVG
FT                 VAPV"
XX
SQ   Sequence 6196 BP; 1158 A; 1839 C; 1600 G; 1596 T; 3 other;
     cccccctgcg ggttcggggg taagaatagg cccgcggtat tcctgcctgt cgtaagaggc        60
     gactaaaagg agtcctcata cgtttcggct tatacatctg tggtccccta tgtgggtttg       120
     accttccatt tttcaaaatt ttttcagaag agcgaaccat ttggggaagg acaccttacg       180
     tggtgcaaca tgtattctcg tgccatgcca tcttatgcac ccatcatgga atggacttgc       240
     gactgcggct tctattctgc cgttgggcac gccatttctt tttccgcgca agtcacgtcc       300
     attgtgcact gatatcccag cacctccttt atgatggttc acacagcgcc agaaagccag       360
     cacggtagcc agtccgttgt ggtggggtcg tcatgtaccc tcttggctgt agccccctga       420
     caacgcaggg atcgctctac cgatgccaga gctgtaaact cctcttgcag gccaggagta       480
     gatgcttgtc gctgtggagc atcaggactc ccggcaatgg tcatcccgcc aggtgacgtt       540
     gctgtggctg ggtggcgccc atgaggagag cccctgctcg gagtgggtgg catcggggcg       600
     gatgattcgc aatgaagcga aacaaatcca acatcaaaat cctggcgcaa caggtgtctc       660
     aaagcgtggg aagttcaacg cagccactta tgacccctcg tcgttccctc tcctgacttc       720
     ttcttggcgg gaacgtggag gtagacagaa tgagccatat gtcccgaaat ttctagtctg       780
     ttctaggacg gatgggggat ccttccaggc aactaagccc atgttttttg tcgaacatat       840
     tgaggacaag ttcggtgagg ttgcgggtat tcaaaaatgc gcgatggatc aattctaata       900
     caggcagagt cccctgcaca gtcccgggct ctgctcacat gcactaagct tggtgacgtg       960
     cctgtatcca taacagcgca taagacgttg aatctggtcc agggagtcat ttttcatcgc      1020
     gaccttttgc tgcagtctga tgaggagttg cgtgaaaacc tgcaacgacg tggtgtccat      1080
     tttgtccgcc gtgtctttcg gggtccgaaa gacaataggg tggcaaccgg ggccttcatc      1140
     ttggccttcg acggcgatac cttgcccgag aaggtcaagg tgatgatata cagatgtgat      1200
     gtccgaccgt acatccctcc acccatgcgc tgtttcaagt gctggcggtt tggacacatg      1260
     tcttcccgtt gcgacgcggc ccctacttgt cgcgactgtg gccgtcccta catccagatg      1320
     ccccttgtac cccaccacct ttctgtgtta actgcagcgg ccaccattcg ccttgctcac      1380
     cggactgtcc cgctttccaa agggagcgca agatcgtaga gtacaagacc ctcgatcgcc      1440
     taacatattc tgaggcccgt cgcaagtacg agaaactcca tcctgtctct atgatgtcca      1500
     catatgctgc agccacagtg gcatcgcctc cattgggggc ggctgcccga cccactatca      1560
     caccttctgt gggccctttg ggccatcagt cagtctcggc tccccagacg cctgggggca      1620
     cctcttcttc tgcgaggctt ttgcctcccc ctttaacggg gtctttgaac cccgtctctc      1680
     tgccggagaa atgtcttcct tcagggaaag ggcctgacga gccccttcca ccacctcctg      1740
     ctgtccccac tgtccctgac accctggatg tcagtcgatc tcctcctgca cggaaagggt      1800
     ctcttgaggt gaccctttcc acggctccag cttcgacgca gccagatgtc agccagtggc      1860
     taaaggccca tgcacccgct ggtagccggg cctccccgtc tgcgtcgaca tccgacgctc      1920
     cttctgggaa gcccactcgg gcgtcaaagc ccaaacccaa gcgggagcgg gcgagaaaga      1980
     aggatgtacc acaggagaaa gagccggcgg caaaggcggc ttcctcgatg ccgtccgctg      2040
     ccagttctga ctccgacaat gaggtcgaaa tccttgcgtc taaagaggac cttgctctta      2100
     cagacaacct ggacgcaatg gacatggaca ccacagaccc tcagcgggtg gcggcaagtg      2160
     acactgaggc gcatcgtgtc tcttaatcac tttcatgcct ccccagtcca taggcagcac      2220
     tttcctccaa tggaattgcg gcggttattt ttcccacctg gcagagttaa aacaactttt      2280
     aagcacttca catgtactat gcgttgccct ccaggaaacc tggcttccgg caacgcgaac      2340
     cccagccctt cgtggctatc gggggtttta caagaatcgt cttgcttatg acagagcatc      2400
     cggtggcgtc tccattcatg tcatcaactc tgcctacagt gaagctgtgc cccttcaaac      2460
     acctttggag gccgtggctg ttcggatcag gacaccacta gctataaccg cctgcagtgt      2520
     ctatcttcca ccagatggtg atgtaccccg ccatgtgtta gctgcactga ttgctcagct      2580
     ccccccacct ttcctcatca tgggcgattt caacgcccat aaccttttgt ggggtggaaa      2640
     cgtgactact ggccgaggta gggaggttga aaatcttgtc tcccagctcg acctttgtat      2700
     tttaaataca ggtgctccca cacatttcag tgtggcacac ggcacctact cggccatcga      2760
     tctatctgtt tgcagccctg gcctcgtacc atctcttcac tggagagtgc atgacgactt      2820
     gtgtggcagt gaccacttcc cgatttttct gtcactgccc cagcgtcatt gccctagccg      2880
     tttgccccgt tgggctctta acaaagctga ctgggatgcg tttaagactg ctgccactgt      2940
     tcgatctttg ccagaaacta atattgatgt ggtggtcgac aatttcacag acgtcattgt      3000
     ctctgcagct cagtctgcaa tcccctcttc ttcgggttcg tcccggcaga ggaccgtgcc      3060
     ctggtggtcg ccggaaatcg ccgacgcaat cagggaacgt aggcgggctc ttcagcgtca      3120
     taaacggcac ccatcagtgg ctaacctcat cgctttcaag cgacttcgtg ccaaggctcg      3180
     gcaacttatc aaaagagcta aacaagaatg ttgggagagg tatgtctcta ccttaggttc      3240
     tcgtgtctct ccatctcagg tgtggactaa gatcaggcgc ctctatggcc accagactcc      3300
     tgttggcgtc cctggtcttt ctatccatgg ggctgtgtgt acagacccga gtgtgatcgc      3360
     tgaacatctt gctgatcact tcgctcggtg ctctgcatct gctaactaca gtgcagcatt      3420
     tcgctcccgc atggagcgtg tggagcgaca gcgcctctcc tttgcgacgc gccgtcagga      3480
     gtcctacaac gccccattca ccgaaagtga gctgcttagt gccttggcca attgcccaga      3540
     tacggctccc ggtcccgacc gtgtccatgc gcagatgctg aaacatctct cgcgggattc      3600
     tcagcgccat gtccttgaca tcttcaaccg catttggggt ggtggcgagt ttccgtccca      3660
     gtggcgggaa gccgtcgtca taccggtgct gaagcctggc agggacccac tggaggttga      3720
     cagttatcgc cccatctgcc tgaccaacgt tctgtgcaag ttgctcgaac gtatggtcgc      3780
     acgtcgcttg amttgggtgc tcgagtcacg gggccttctg gcgccgtcgc agggtggatt      3840
     tcgccagggt cgttctacga cagataatct ggtgtgcctg gagtcagcgg ttcgaacagc      3900
     tttttcccgt cgtcagcacc tcattgcggt tttcttcgac cttcagaagg cctacgatac      3960
     cacatggcgg catcacatcc tcgctacgct gcatgagtgg ggccttcggg ggtcactccc      4020
     catttttatt saaaatttcc tccgactccg cacgtttcgg gtccgagtcg gtgttgccca      4080
     tagttcgccc cacgtccaag aaaatggggt cccacagggg tctgtgctga gtgtctcgct      4140
     gtttttggtg gccattaatg gcctggctgc agctgtgggg tcatcggtgt ctccttccct      4200
     gtacgccgat gatttttgca tatctttctg ctccaccaca acaagtgctg ctgaacgccg      4260
     gctccaggcg gccatccgcc aggctcacat gtgggcccag catcatggct tccagttttc      4320
     cgccggcaaa acacgtgtga tgcacttctg tcggcgtcgg acagtccacc cccaccctga      4380
     actctatctt gacggccaac tgcttcctgt cgtggacact caccggttcc taggactgat      4440
     ctttgatgcc cgactgactt ggctccctca tattcgttat ctgaaatggg agtgcgggcg      4500
     ccatctcaac gcccttcgat gtctgggtca taccacatgg gggctgaccg ctccaccctg      4560
     ctgcggctct atacagcctt ggtgcaatcg cggttagatt ttgggtgcct cgcttatggc      4620
     tctgcatcgc cttcagcgtt gcgcttgttg gaccctattc accactgtgg ggttcgcatt      4680
     gcgacgggag ccttccgaac cagccctgtg gccagtctac tagcagaggc cggggtcccc      4740
     ccattatggg tccgccgcca acaactgttg gcagcgtatg cagcccgagt gtatagttca      4800
     ccaggacacc cgaactaccg cctacttttt tccactgtgg ccgtccgtca ccagcagcag      4860
     cgacccaggt caggacacac aatagccgtc cgcgtgcagt ccctcctggg ggagcttgag      4920
     tcctatcctc tcccacctcc atttcgggcc cgttcacgca cacctccatg gtgcctgcca      4980
     cggccgtgtc ttcgtttaga cttggcccac gggcgcaagg actcggttcc ccctgaggct      5040
     ctccgtcgcc agtttttcgc tgtcgttgct gagcaccccg gctatgacat agtttatacg      5100
     gatggctcgt tggtaaatgg ccgcgttggc tttgcctacg tccatggcga ccacgttgag      5160
     cagcagtctc tgccagaggg ctgcagtgtt tatactgcgg aactggtggc cattttccgt      5220
     gctctcgagc atatgcgttc ctgctcaggt gagtctttcc ttctttgtag tgactccctg      5280
     agcagcttac gcgctctgga ccagtgctac ccacgttcgc cattggtgat ggccatccga      5340
     gagactgttt ttgcccttgt tcggtctggc agatcagtgg tgtttctttg gtctccgggt      5400
     cacgtcggca tcccaggcaa cgaacgtgcc gatgggcttg ccaaacaggc tgttaatgcc      5460
     tctatcttag agatcggcct cccagctcct gatctccgtt ccttgttgcg ccgccgggta      5520
     catcagcttt gggatgctga gtggcgtagc ctgagcacgc ccaacaagct ccgggttgtc      5580
     aaggagacta cggctgtgca tggcgctcct cmatgcgtgg ctctcgccgg gactcagtgg      5640
     ttttgtgtcg cctccgcatt gggcacacgt ggctcaccca tggacatctc cttcggggtg      5700
     aggacccgcc ccaatgtcgg tgtggctccc gtctgacaat cgtccacata ttgttggact      5760
     gccccgtttt agccgccttg cggcgaaatt ttaacctccc tgatgtttta tcagaagttt      5820
     taggtgacga tgctacaatg gcagattccg ttttacgttt tattcgagca ggggttttta      5880
     tcattctctc taactagaga tttccttgtg ctgccgagtg gttgactttt cctattttat      5940
     ttttatggtc ggccaaccac agccatcggc ttccttgttg taagctgtct ttgtgtgatg      6000
     tccctttcgt tttgtttctt gtcgtttttg atgatgtttt atggactcag tgggattccc      6060
     ctcccacttt acacttaact ctgggcccat ctctttcacg cccacagtat tctttgacgc      6120
     tttgtgatgg aatgggggac tgatgaccat tgtagttttg tcccccttaa acatccaacc      6180
     aaccaaccaa ccaacc                                                      6196
//
ID   Nimb-18_LMi repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5986
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3410-3410 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(396..851,812..1894,1898..3340,3151..3984,
FT                 3971..4144,4114..5145,5042..5605)
FT                 /product="Nimb-18_LMi_1p"
FT                 /translation="MKRANNSVATRKPGVSKRGRSEYNAAEYDPQTFPSLA
FT                 TPWEERRARHQGEAYAPKYLVCSRTDGESFKTTKPLFFVENLEDKFGEVEG
FT                 MSKMRSGSVLITTSSPAQSRALLACDKLGDVSVTITPHKTLNMVQGIIFHK
FT                 DLCCSQMTNCVPTRPLLQSDDELRANLERRGVHFIRRVHRGPKDNRVATGA
FT                 FILAFEGDSLPEKVKVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCDANPT
FT                 CRECGRAVHPNVPCTPPPVCVTAAESLPLLAYVHGSAPRKKNHGVQDQRPT
FT                 DYSEAKRKYQKLHPVRLVNTYATAASPSSSTVPAVQSVQSTPVGPQAQSTD
FT                 PAPLPAGGTSSSVAPTFSPWEQHPLNIGDPVPTSKPEKEKPSPAPLARKGS
FT                 LGTPPSAATQSAPEDPGRRLKDLQPAGRRASRSSSVPDAASGKPSRPCKPK
FT                 GQREEKKKRNKKKECSVASKPQPPTSSSSEDEVEILASPEDLAITDSPDNK
FT                 ISGSVDSEHMVADDPMESAPLFIMAVQPGENILQWNCGGFFHHLAELRQLL
FT                 SQTPAFCIALQETWFPAMRSPALRGYRGYFKNRSVYDRVSGGVCVYVLATV
FT                 PSAAVPLQTPLEAVAVRLRAVQDVTICSVYLPPDEDVSPVDLAALVAQLPP
FT                 PFLLLGDFNAHHTLWGGTQTSARGRDVETLLTQLNICLLNTGAATHFSVAH
FT                 GTFSAIDLSICSPSLLPHFTWRVHDDLCGSDHFPIFLSLPQCPPADRLPRW
FT                 SLHRADWPAYSIAAALPSPLLADIDAAVQQVTDTIISAAEKTVPTSLGSLH
FT                 RKSVPWWTPEIAEAIRERRRALQRHRRHPSIDNLIAFKRLRARARRLIQQS
FT                 KRASWERYVASIGSRASPSRVWSQVRRLFGHRPPAGIPCLSIQGTICTDPL
FT                 TIAEHLAHHYARTSATAAYGADFRALKERTERKRYLFERDARKYTTSLSVN
FT                 GSSKAPLPHAQPRPLDPTAFTVSSSDTYQRTLSANFSPCRAHRAKTISFRT
FT                 RRQEVYNIPFSEWEFESALAACPATSPGPDRIHSQFLRHLSADSKRQLLSL
FT                 LNRLWVEGVFPSQWRDSIVIPVMKPGADPQVADSYRPISLTNVPCKLLERM
FT                 VSRRLMWILEDRGLLAPQQGGFRRGRSAIDNLVSLESAIRTAFTRREHLVA
FT                 VFFDLRKAYDTTWRHHILSTLYDWGLRVHFLYSYRIFSRYVLFVSVLVPVS
FT                 APLTIKKTVSHRVPFLVSLYFWSLSMVLLLLWGHRFPPRCMPMTSAYILAP
FT                 LASALLNGGCRTAVADSYSKGAVMGVCPRFPIFCIENPGDAFLSASGGTPG
FT                 TRTYLADDLLRVEETHVFSAACRRDARFLGMLFDNRLTWVPHLRQLKQKCW
FT                 RHLNILRCLSHTVWGASRPTLLQLYKALIQSRLDYGCIVYDSAAPSALQAL
FT                 DPILHXGVRLATGAFRTSPVTSLLVEAGVLPLRFRRQHLLASYVAHVQALP
FT                 HHPNHRLLFPGAALPIPPRRPRSGYPMSVRVRSLLSSLESHPLPATFQYSF
FT                 QTPPWSIPRLQLCLDLSHASKDSVSPTQLRRQFLHLFDSFRGAEAIYTDGS
FT                 LADGRAGYACLHGDHVEQHSLPRESSVFTAELVAILKALEHLRACPRGSFV
FT                 ICSDSLSGLQAIDQFFPHHPLVQSIQDTAYSLGKSGRSVVFLWTPGHIGIP
FT                 GNERVCSPFKTLLTLLANLAVLWSSCGPLATLAYRGMNVSDQLAKQATTAP
FT                 PLTIGVTESDLKLALHKKVREAWSAEWSTTSATNKLRAVKLSTTLWKSSLR
FT                 PIRRESVVLCRLRIGHTWLTHGHLLRREAPPVCRCGAALTVVHLLMDCPVL
FT                 ATLRQSFNLPDALPLVLGDDASTANSVLSFIRAAGFYNSI"
XX
SQ   Sequence 5986 BP; 1224 A; 1788 C; 1480 G; 1493 T; 1 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aacctcaatc tcaaggtgtg       240
     ctacgtgccg aggagatgca tggctgttga ggttgaacag tcgctagcga gcaacctctg       300
     aggaacctgc cgcacctcag ttgtataagg cttacccagg caagcggggc tctgcctggg       360
     tggaccttta gtccctagct gctcgtggga ccagaatgaa acgagcaaat aatagcgtcg       420
     ccacacgcaa acctggcgtc tctaagagag gtagaagcga gtacaatgct gcagagtatg       480
     atccccaaac gttcccttcc ctggctacac catgggagga acgtcgggca agacatcagg       540
     gtgaggctta tgcccctaaa tatctggtct gtagccgtac tgatggggaa tcgtttaaga       600
     caacgaagcc attatttttt gttgaaaacc tggaggacaa gtttggagag gtggaaggga       660
     tgtctaagat gcggtcaggg tcagtgttaa taacgacgtc atccccagcc cagtcacggg       720
     cactgcttgc ctgtgacaag ctgggtgatg tttccgttac catcacgccg cacaagacct       780
     taaatatggt acagggtatc atcttccata aagacctttg ctgcagtcag atgacgaatt       840
     gcgtgccaac ctagaacggc ggggagtaca ttttattcgg cgagtccata ggggtccgaa       900
     ggacaacagg gtcgccaccg gtgccttcat cttggctttc gagggcgatt cattgcccga       960
     gaaggtcaag gtgatgatct accggtgcga cgtaaagccc tacgttcctc cccctatgcg      1020
     ctgttttaag tgctggaggt ttgggcatat gtcctcccga tgtgatgcca accctacatg      1080
     tcgggagtgt ggacgtgcgg ttcatccgaa cgtcccttgc acgccccctc cagtatgtgt      1140
     aactgcggca gaatcactcc ccttgctcgc ctatgtgcac ggttctgcac caagaaagaa      1200
     aaatcatgga gtacaagacc agagaccgac tgactactcc gaggcaaaga ggaagtatca      1260
     gaagctccac cctgtgcgcc tggtcaacac ctatgccacg gcagcctcac cgtcgtcctc      1320
     cactgtgcct gcggtccagt ccgtgcaatc aacgccagtg ggcccccagg cccaatcaac      1380
     tgaccctgcc cccttaccag ctgggggcac ttcctcttcg gtggctccca ccttttcacc      1440
     gtgggagcaa cacccgctaa acatcgggga cccagtcccc acctctaagc cggagaagga      1500
     gaagccttct ccggcccctc tcgctcggaa ggggtccctc gggacacccc cttccgcggc      1560
     tactcagagt gctccggagg atcctggccg caggcttaag gatctacaac ctgccggtcg      1620
     aagagcttcc cgctcttcct ccgtcccgga tgccgcttct gggaagccct ctcggccctg      1680
     caaaccaaag ggccagcgag aggaaaagaa gaagcgaaac aagaagaaag aatgttcggt      1740
     ggcttcaaag ccacaaccac ccacatcctc ttcttcagag gatgaagtcg agatcctcgc      1800
     atctcctgag gatctcgcaa ttactgattc cccagacaat aagatctctg gttctgtgga      1860
     ttcagagcac atggtagcag acgatccaat ggagtgatct gctcctttat tcatcatggc      1920
     ggtacagccc ggagaaaaca tcctccagtg gaattgtggc ggctttttcc accacctggc      1980
     tgagctacga caacttctaa gccaaacacc tgctttctgt atcgctcttc aggaaacctg      2040
     gtttccagcg atgcggtccc ctgcccttcg aggctaccgg ggctatttta aaaatcgctc      2100
     cgtctatgac agagtttccg gtggagtctg cgtctatgtc ctagccactg tcccaagcgc      2160
     tgccgtgcct cttcaaacgc ctctagaggc ggttgctgtt cggctccggg cagtgcaaga      2220
     tgttacaata tgttctgtct acctcccacc agatgaggat gtctctcctg tagacctcgc      2280
     tgccttggtc gcccaacttc ccccaccctt ccttcttttg ggggatttca atgcccacca      2340
     cactttgtgg ggtggcacac agacctcggc acggggtaga gatgttgaga ctctactgac      2400
     gcagctgaac atctgcctcc tcaacaccgg tgctgctaca cactttagcg tagcacacgg      2460
     aacattctcc gccatagacc tgtctatctg cagcccaagc ctgcttccac acttcacttg      2520
     gagggtccac gatgacctgt gtggcagcga ccatttccct atcttcctgt cgctcccaca      2580
     gtgtccacct gctgaccgtc tgcctcgctg gtccctccat agggccgact ggccagcata      2640
     ttccatagct gctgcgcttc cctctcctct tctggctgat attgatgccg ctgttcagca      2700
     ggtcacagat accatcattt ctgctgctga gaaaaccgtt cccacctcac tcggatcact      2760
     ccaccgtaag tcggtgccct ggtggacacc ggagatcgct gaggccatcc gggaacgtcg      2820
     gcgagcacta cagcgccacc gacgccaccc ttccatcgat aatcttatcg catttaagcg      2880
     tctccgggca cgggcacggc gattgatcca gcaaagcaag agggcctcct gggagcgtta      2940
     tgtcgcctcc attggatccc gagcatcgcc ttcacgggta tggtcgcaag ttcgacgcct      3000
     cttcgggcac cgcccaccag cgggaattcc gtgcctcagc attcagggta caatctgtac      3060
     tgaccctctc accatagctg agcatttggc acaccactat gctcgcacct cagcgaccgc      3120
     tgcatatggt gcggacttcc gcgcccttaa agagcgcaca gagcgaaaac gatatctttt      3180
     cgaacgcgac gccaggaagt atacaacatc cctttcagtg aatgggagtt cgaaagcgcc      3240
     cttgccgcat gcccagccac gtcccctgga cccgaccgca ttcacagtca gttcctccga      3300
     cacctatcag cggactctaa gcgccaactt ctctccttgc tgaatcgtct ctgggttgag      3360
     ggtgtcttcc cgtcccaatg gcgggatagc atcgtcatcc cggtgatgaa gcccggggct      3420
     gatccgcagg tggctgatag ttaccgacca atcagcctca ccaacgttcc atgcaaactc      3480
     ctcgaacgga tggtgagtcg gaggcttatg tggatccttg aggaccgggg actcctggcc      3540
     ccacaacaag gtgggttccg tcgtggccgc tccgctatcg ataatctcgt gtcgctggag      3600
     tcggccatcc gtacagcctt tacacgccgc gaacatctgg ttgctgtgtt ctttgacctg      3660
     cggaaagcgt acgacaccac ctggcgccac cacatactgt ctacgctgta cgactggggc      3720
     ttacgggtcc acttcctgta ttcatacaga attttctcgc gctacgttct tttcgtgtcc      3780
     gtgttggttc ctgtctcagc tcccctcact atcaagaaaa cggtgtccca cagggttccg      3840
     ttcttagtgt ccctttattt ttggtcgcta tcaatggtct tgctgctgct gtggggtcat      3900
     cggtttccac ctcgttgtat gccgatgact tctgcatata ttttagctcc actagcatcg      3960
     gcgttgctga acggcggttg cagatagcta ttcgaaaggc gcagtcatgg gcgtttgccc      4020
     acggtttcca attttctgca tcgaaaaccc gggtgatgca tttctgtcgg cgtcgggcgg      4080
     tacacccgga acccgaactt atctggctga tgatctgctg cgtgtcgaag agacgcacgt      4140
     tttttaggca tgttgttcga caaccgtctc acctgggtgc cacaccttcg ccagctcaaa      4200
     caaaagtgct ggcgacacct caacatactg cgctgtctca gccatactgt ttggggagcc      4260
     tcacgcccaa cgctcctgca actttataag gcgctcattc agtcgcgcct agactatggc      4320
     tgcatagtat atgattcggc tgcaccttca gcactgcagg cattagaccc aatcttacat      4380
     tstggagttc gtttggcgac aggggctttt cgcacgagcc ctgtgacaag cctcctagtt      4440
     gaagctgggg tccttcccct gcggttccgc cggcaacacc tgctggcttc atacgttgcc      4500
     catgttcagg ccttgccaca ccatccgaac caccggcttc tttttccagg cgctgcactc      4560
     cctatccctc cacgacggcc ccggtcgggt tatccaatgt cagtccgtgt tcgttctctc      4620
     ctttcgtccc ttgaatccca tccactccct gccactttcc aatattcctt tcaaacccct      4680
     ccttggtcca ttccccgttt gcagctttgt ctggatctgt cccatgcatc gaaggactcc      4740
     gtttctccga cacaactccg tcgccagttc ctgcatctct tcgactcttt ccgtggtgct      4800
     gaagccattt atactgatgg gtccctagca gatggtcgtg ctgggtatgc atgtctccat      4860
     ggtgaccatg tcgaacagca ttcattgccc cgtgaaagta gtgtctttac tgcagagctg      4920
     gtcgccatcc taaaggctct agaacatctc cgagcctgcc ccagggggtc atttgtcatc      4980
     tgtagtgact ccctgagtgg cttgcaggca atcgaccagt tcttccctca tcacccatta      5040
     gtgcagtcca ttcaagacac tgcttactct cttggcaaat ctggccgttc tgtggtcttc      5100
     ctgtggaccc ctggccacat tggcataccg gggaatgaac gtgtctgacc agttggccaa      5160
     acaggccacc actgcgccac ctttaaccat tggcgtcaca gaatcggacc tcaagttagc      5220
     attgcacaag aaggtgcgtg aggcttggag tgctgaatgg tctaccacga gtgcaacaaa      5280
     caagcttcga gcagtgaagc tatccacaac tctgtggaag tcttcactgc ggcccatacg      5340
     tcgagagtcg gttgtcctct gccgcctccg tattgggcat acctggctga cccatggcca      5400
     tctccttcgc cgtgaggccc cacctgtgtg tcggtgtgga gcagcgctga cagtagtcca      5460
     tcttctgatg gactgcccag ttttagccac cttgcggcag tcttttaacc taccagacgc      5520
     gctaccctta gttttaggcg acgatgcctc cacggctaat tccgttttaa gttttattcg      5580
     tgcagctggt ttttacaact ccatctagtg gtgggtgcta tagcctgata cctcaggtcc      5640
     ccacctatcc agcgctttta aagacttttt aagaccctta tgtaaatacc taggggtttt      5700
     tagtgtgtgc agtatggctg gctcatcctg ttttatctct gtgatcagcc agccatggta      5760
     ctctgctgtc cagttttagt tgagttcctg actttgtttt acctattgtg tgtcttcgtt      5820
     ttgtgttgtc agcgacttgt ccattgtcag cctgtccctt ttgtgagttt ttattttcgg      5880
     agctttgttt tattttttac gctcttgaca gtggactctt agctaggaac aggggactga      5940
     tgacctagct gtttagtccc ctaaaaacca acaacaacaa caacac                     5986
//
ID   Nimb-19B_LMi repbase;    DNA;    INV; 1075 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 19.12, Created)
DT   26-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element;
KW   Nimb-19B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1075
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3388-3388 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1075 BP; 207 A; 275 C; 272 G; 321 T; 0 other;
     tgtcgcatgc ctcaaagcct ctgtagcgcc actgagtctc cgtcgccagt ttcaggcggt        60
     tttagatcgt tctgtggcgc ggaagtcgtg tacaggatgg ttccgtggtc gacggccgta       120
     ctggatatgc atatgtccat ggtgagcata tcgaacagca ttcactgccc tgtgggagta       180
     gcgtgttcac tgcggaattg gttgccatct atcgggcact tgaacatctc agagcgtgcc       240
     ctggggagtc tctggtcatc tgttctgact ccctgagtgg cttgcaagcc ctcgccaaat       300
     gtttcccgaa acaccctttg gtgcaatcca tacaggagtc tgtttccagg cttgttcggt       360
     ctggtcgctc tgtggtcttt gtttggaccc caggccacat cgggattcct ggaaacgaac       420
     gtgtggatca gctggctaag caggctactt cctccagtcc attggctatt ggtcttccgg       480
     agagcgatct ccgactggag ttccatcgga agatccgtgg cctgtgggat tccgagtggg       540
     ctaactctgc tcaacccaac aagcttcgtg cagtgaagct acctacggtc gcatggaagt       600
     cctcactgcg gtcgtctcgt agggaatcgg ttgttctctg tcgcctacga atcggccaca       660
     catggctgac gcatggccac cttcttcggc gggaggacgc accacagtgt gactgtggcg       720
     cccccttgac agtggtccac attctggtgg actgtccact tttagttgcc ttgcgacaat       780
     cttttaatct gccagatgcg ctttctttta tgctaggaga cgatgctgct atggttgaac       840
     gtgttttaga ttttattcgc gcagctggtt tttatcatgt gatttaatgg tggtgtgttt       900
     tcttcttcgt ttttacttgt atcctttcct catatttacc agtgattttt actctttgac       960
     ttgttaacgc atttccttag gaacgcttaa cacaatgttt tatctctcag accggaacaa      1020
     gggactgata accgttgctg tttagtccct tcaaaaatcc aacaacaaca acaac           1075
//
ID   Nimb-19_LMi repbase;    DNA;    INV; 5988 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5988
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3411-3411 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(412..732,641..1495,1459..1800,1725..1955,
FT                 1865..3163,2938..5625)
FT                 /product="Nimb-19_LMi_1p"
FT                 /translation="MALPGAKPASLSVXGPNLMLRHMTPRRSLPWPRHGRN
FT                 AGREIEVRLMPPXTWYVPGLTANRLPPRSPCFLWKTLRISSGRWMACQDEI
FT                 WXCXHXDVVPSPVTGTACLVRGGGWHVKMRSGXVLITTSSPAQSRALLACD
FT                 KLGDVPVSITPHKSLNMVQGIIFHKDLLLQXDDELRKNLERRGVHFIRRVH
FT                 RGPKDNRVATGAFILAFEGDSLPEKVKVMIYRCDVKPYVPPPMRCFKCWRF
FT                 GHMSSRCXGNPTCRECGRAXHPDAPCAPPPVCVNCGQHHSPCSPXCTVLHK
FT                 ERKIMEYKTLDRLSYSEAKRKYXKLHPVSMKTSMPQLHHTASAISATALHC
FT                 LVFHSGPPGXTAHXCPHGLWGHLNLHRPQGPYFGSSNHHSTCGXISPHPPP
FT                 LHLWGHQSPPLSQRHNSXLWLLSRGRGPSDPFLLRLLLLKDTSRWLKEPPT
FT                 AGRRASRAPQFLGTEPAEPSQHEKPKEQRETKEKDKKPPKRRIPWWPPCHH
FT                 PPPPLLLRTRETTQEKDSLVATVPPPPSTSSSEDEIEILASPKDLAIAESS
FT                 EAMDVEALPQKSATAEDTVNPTAPSKSACPSDQEALGSASKIGDSRRYCEP
FT                 YCAVEISMSQRPGGSLILQWNCGGFFRHLPELQQLLCRFPAFCVALQETWF
FT                 PAQRTPALRGYRGYYKNRTIYDRVSGGVCIYVLATVPSAAVPLHTTLEAVA
FT                 VRIRAMQELTICSLYLPPDEMVSLTDLAALVAQLPPPFLLLGDFNAHHPLW
FT                 GGAQTTGRGRDIETLLSQQDICLLNTGAPTHFCVARGTYSAIDLSVCTPSL
FT                 LPHFQWRVHDDLCNSDHFPVLMSLLDFQPAGCPSRWSLRRADWQRYTSAAT
FT                 VPVPLPADVDMAVHQVTSTIVSAAEATIPTTSGSPRRKSVPWWTPEIAEAI
FT                 RDRRRALQRHRRHPTVENLIAFKRLRARARQLIRQSKRDCWETYVASIGCR
FT                 ASRLGCGPRLGAFLGTVHQQRSPAYTSRVTYAPTRLPSLNTWQSIMLAPLQ
FT                 HQNTVQTSVHTGLLGDVCRQHRLSRLASRVWSQVRRLFGYRPPAAIPSLHI
FT                 QGNLCTDPTSIAEHMAEHYARTSATSEYSADFRALKERVEQRRLSFHTRRA
FT                 ESYNSAFSEWEFETALAACPDTSPGPDRIHSQFIRHLSVEFQHQLLALFNR
FT                 LWAEGAFPSQWRESIIIPVIKPGADPQVADSYRPISLTNVLCKLFERMVSR
FT                 RLMWILEHRGLLSPHQGGFRQGRSTVDNLVALESAIRTAFSRREHLVAVFF
FT                 DLRKAYDTTWRHHILATLHGWGLRGPLPLFIQNFLSFRSFRVRVGTSLSSP
FT                 RVQENGVPQGSVLSVPLFLIAINGLAEAVGSSVSSSLFADDFCLYFSSASI
FT                 GVAERRLQGAIRKAQSWASTHGFQFSPSKTRVMHFCRRRAVHLDPELYLYD
FT                 ELLRVEETHRFLGMLFDSRLTWVPHLRQLKQKCVRYLNILRCLSHTSWGAA
FT                 RTSLLQLYRALIQSRLDYGSFVYGSAAPSALQVLDPVLHSGVRLATGAFRT
FT                 SPVASLLAEAGVLPLRFRRQQLLSSYAAHVHATPHHPNRRLLFPAAALPSP
FT                 RQRPRSGLPIAVRVRSLLSSLESLPIPPTFHCPYRTAPWSLPRPQLRLDLS
FT                 HASKASVAPLSLRRQFQAVLESFCGAEVVYTDGSVVDGRTGYAYVHGEHIE
FT                 QHSLPCGSSVFTAELVAIYRALEHLRACPGESLVICSDSLSGLQALAKCFP
FT                 KHPLVQSIQESVSRLVRSGRSVVFVWTPGHIGIPGNERVDQLAKQATTSSP
FT                 LAIGLPESDLRLEFHRKILGLWNSEWANSAQPNKLRAVKLSTVAWKSSLRS
FT                 SRRESVVLCRLRIGHTWLTHGHLLRREDAPQCDCGAPLTVVHILVDCPLLV
FT                 ALRQSFNLPDALSFMLGDDAAMVERVLDFIRAAGFYHVI"
XX
SQ   Sequence 5988 BP; 1183 A; 1759 C; 1531 G; 1482 T; 33 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa acctcaatct caaggtgtgc       240
     tacgtgccga ggagatgcat ggctgttgag gttgaacagt cgctagcgag caacctctga       300
     ggaacctgcc gcacctcagt tgtataaggc ttacccaggc aagcggggct ctgcctgggt       360
     ggacctttag ttccctagct gctcgtggga cgagaatgaa acgagcaaat aatggcgttg       420
     ccgggcgcaa aaccggcgtc tctaagcgtg gkmgggccga atttaatgct gagacatatg       480
     acccccaggc gttcccttcc ttggccacgc catgggagga acgcagggcg agaaatcgag       540
     gtgaggctta tgccccccgw tacttggtat gttccmggac tgacggcgaa tcgtttacca       600
     ccacgaagcc cctgtttttt gtggaaaacc ttgaggataa gttcggggag gtggatggca       660
     tgtcaagatg agatctgggk ctgtmctcat wacgacgtcg tccccagccc agtcacgggc       720
     actgcttgcc tgtgacaagc tgggtgacgt ccccgtwagc atcactcccc ataagagcct       780
     caacatggta cagggwatta tattccataa ggaccttctg ttgcagwctg acgacgagtt       840
     acggaagaac ctggagmggm gaggagttca cttcatmcgg cgwgttcata ggggtccgaa       900
     ggacaatagg gtcgccaccg gtgcattcat cttggccttc gagggcgatt ccttgcckga       960
     gaaggtcaag gtgatgatat accggtgtga cgtaaagccc tacgttcctc cccctatgcg      1020
     ctgcttcaag tgctggaggt ttgggcacat gtcctccagg tgtgmtggca accccacmtg      1080
     tcgggagtgt ggacgtgcck cacacccgga cgccccttgt gcmcctcctc cagtatgtgt      1140
     gaactgcggg cagcaccact ccccttgctc gcccgmctgc ackgttcttc ataaagaaag      1200
     aaagatcatg gaatataaga ccctggaccg gctgtcwtac tcggaggcma agaggaagta      1260
     tgmcaaactc catcccgtsa gcatgaagac atctatgcca cagctgcatc acactgcctc      1320
     tgccatctct gctaccgccc tccactgcct cgtcttccac agtgggcccc cmggccmaac      1380
     cgcccacmtc tgcccccatg gcctttgggg gcacctcaac ctccatcgcc cccaaggtcc      1440
     ctactttggg agcagtaacc accactccac ctgtggggmc atcagtcccc acccctgagc      1500
     cagagacaca acagccwtct ctggctcctc tcgcgaggaa ggggtccctc ggatcccttc      1560
     cttctaaggc ttctcctgtt gaaggatacc agtaggtggc tgaaggagcc acctactgct      1620
     ggtcgcaggg cctcgcgggc tcctcagttc ctggggactg agccggcaga gccctcccag      1680
     catgagaagc ctaaggagca gcgcgagaca aaagaaaaag ataagaaacc acccaagaga      1740
     aggattccct ggtggccacc gtgccaccac ccccctccac ctcttcttct gaggacgaga      1800
     tagagatcct cgcgtccccc aaagacttgg cmattgccga gtcttcggaa gctatggacg      1860
     ttgaggctct gcctcaaaaa tcggcgacag cagaagatac tgtgaaccct actgcgccgt      1920
     cgaaatcagc atgtcccagc gaccaggagg ctctctgatc ctccaatgga actgtggcgg      1980
     ctttttccgc catctgccag agttgcagca attgttgtgc cgcttcccag cgttttgtgt      2040
     agccctgcag gaaacctggt ttcctgctca aaggacccca gcccttcgtg gctatcgggg      2100
     ctattacaaa aaccgtacca tatatgacag ggtctctgga ggtgtatgca tctatgtcct      2160
     tgccactgtc cccagtgccg ctgtgcctct ccacacgact cttgaggcgg tggctgttcg      2220
     aatccgggct atgcaggaac tgacgatctg ttctctttac cttcctccag atgagatggt      2280
     ttcgcttact gaccttgctg ccctggtggc acaacttccc ccaccatttc tgcttctggg      2340
     ggacttcaat gcccaccatc ccttgtgggg tggagcgcag acaacaggcc gcggtaggga      2400
     catagagacg cttttatcac agcaagacat ctgcctgcta aacactggtg cacccacgca      2460
     tttttgcgtg gcgcgaggca cgtattcagc gatagatctc tctgtttgta ccccgagcct      2520
     gctcccgcat ttccagtgga gggtccatga tgacctttgc aacagcgacc attttcctgt      2580
     tctcatgtcg ctcctggatt ttcaacctgc gggctgcccg tctcgatggt ctcttcgtcg      2640
     agctgattgg caacgctaca cctcagctgc tacggttcct gtcccactgc cagccgacgt      2700
     ggacatggcg gttcaccagg tcaccagtac gatagtttca gccgctgagg caaccattcc      2760
     caccacttct ggctccccac ggcgtaagtc tgtgccctgg tggacgccgg aaatcgctga      2820
     ggccatccgg gatcgtcgtc gggcgctcca gcgccatcgt cgacacccca ctgtagaaaa      2880
     ccttatagct ttcaaacggc tccgggcccg agctcgacag ctcatccggc agagtaaacg      2940
     ggactgttgg gagacgtatg tcgccagcat cggctgtcgc gcctcgcgtc tcgggtgtgg      3000
     tcccaggtta ggcgcctttt tgggtaccgt ccaccagcag cgatccccag cctacacatc      3060
     cagggtaacc tatgcaccga cccgacttcc atcgctgaac acatggcaga gcattatgct      3120
     cgcacctctg caacatcaga atacagtgca gacttccgtg cactgaaaga gcgggttgaa      3180
     cagcgacggc tgtcctttca cacgcgtcga gcagaatcgt acaactccgc tttcagtgaa      3240
     tgggaattcg aaactgccct tgccgcatgc cccgatacct ctccgggacc ggacaggatc      3300
     cacagccagt tcatccggca cctttccgtg gagtttcaac accagcttct cgccctgttt      3360
     aaccgtttat gggcagaggg ggctttcccg tcacaatggc gagaaagcat cattattccg      3420
     gtgatcaaac ctggtgctga tccacaggtg gctgatagtt accgcccaat cagcctcacc      3480
     aacgttctgt gcaagctatt cgaacgtatg gtgagccggc ggcttatgtg gatacttgaa      3540
     catcgaggtc tgttgtcccc acatcagggg ggtttccgcc aaggccgctc cactgttgat      3600
     aacttagtgg ctctggagtc tgccattcgt acggcattta gcaggcgtga gcaccttgtt      3660
     gccgtctttt tcgacctcag aaaggcatac gacaccactt ggcgccacca tattctggct      3720
     acactgcacg gttggggctt gagaggtccg ctcccacttt ttattcaaaa ctttctttcc      3780
     ttccgatctt ttcgggtacg ggttggtact tccctcagct ccccccgcgt ccaggagaac      3840
     ggtgtcccgc agggctccgt ccttagtgta cccctctttt taattgccat caatggactt      3900
     gctgaggcag tggggtcatc ggtttcttcc tccttgttcg ctgatgactt ctgcttatac      3960
     ttcagctcag ctagcattgg ggtagctgaa aggcgtctac agggagccat tcgaaaggcg      4020
     cagtcgtggg cctcaaccca tgggttccag ttttctccat cgaaaacccg ggttatgcac      4080
     ttctgccgcc gtcgagctgt ccatttggac ccagagctwt atttatatga cgaacttctt      4140
     cgtgtcgaag agactcaccg atttcttggc atgctcttcg acagccggct cacttgggtg      4200
     ccccatcttc gtcagctcaa gcagaagtgc gtgcggtacc tcaatattct acgctgcctc      4260
     agccacacta gttggggagc cgcccgtacg agtcttttgc agctctacag ggcgctgatt      4320
     caatcacgct tagactacgg gagctttgtg tatggttcgg cagccccatc tgcattgcag      4380
     gtcttggacc cagtactcca cagtggcgtc cgtttagcga caggggcctt tcggacaagt      4440
     ccagtggcaa gcctacttgc tgaagctgga gtccttcccc tgcgatttcg ccggcagcag      4500
     ctgttatcct cctatgctgc ccatgttcat gcaacacctc accacccaaa tcgcaggctt      4560
     cttttcccag ctgctgcact cccatctcca cgacaacgac cgaggtcagg tcttccgatt      4620
     gcggtccgtg ttcgttccct cctgtcatcc cttgagtccc ttcccatccc tcctactttt      4680
     cactgccctt accgtaccgc tccttggtct cttccacgtc cgcagcttcg gctggacttg      4740
     tcgcatgcct cgaaagcctc tgtagcacca ctgagtctcc gtcgccagtt tcaggcggtt      4800
     ttagagtcgt tctgtggcgc ggaagtcgtg tacacggatg gttccgtggt cgacggccgt      4860
     actggatatg catatgtcca tggtgagcat atcgaacagc attcactgcc ctgtgggagt      4920
     agcgtgttca ctgcggaatt ggttgccatc tatcgggcac ttgaacatct cagagcgtgc      4980
     cctggggagt ctctggttat ctgttctgac tccctgagtg gcttgcaagc cctcgccaag      5040
     tgtttcccaa aacacccttt ggtgcaatcc attcaggagt ctgtttccag gcttgttcgg      5100
     tctggtcgct ctgtggtctt tgtttggacc ccaggccaca tcggcattcc tggaaacgaa      5160
     cgtgtggatc agctggctaa gcaggctact acctccagtc cattggctat tggtcttccg      5220
     gagagcgatc tccgactgga gttccatcgg aagatmcttg gcctttggaa ttccgagtgg      5280
     gctaactctg ctcaacccaa caagcttcgt gcagtgaagc tatctacggt cgcatggaag      5340
     tcctcactgc ggtcatctcg tagggaatcg gttgttctct gccgcctacg aatcggccac      5400
     acatggctga cgcatggcca ccttcttcgg cgggaggacg caccacagtg tgactgtggc      5460
     gcccccttga cagtggtcca cattctggtg gactgtccac ttttagttgc cttgcgacaa      5520
     tcttttaatc tgccagatgc gctttctttt atgctaggag acgatgctgc tatggttgaa      5580
     cgtgttttag attttattcg cgcagctggt ttttatcatg tgatttaatg ggaagcctga      5640
     tatttcaggc acccaccatt caaacggttt taatcttttc gtcctgtcag tccactttga      5700
     ctggcagttt agtgtgtgca gaatggctgg ctcatcctat attatctttg cgatcagcca      5760
     gccacattct tctgctgtga tattttatgt tgttgtctgt ttggtcaact actttgtgtt      5820
     ttcctttaaa tgttgtctct tagcacgcat tatcactctg accgtctctg cattagacgt      5880
     ggagtacttt ttaccgctaa ttaaaagatg tgctctcttg gctaggaaca agggactgat      5940
     aaccgttgct gtttagcccc ctttcaaaaa cccaacaaca acaacaac                   5988
//
ID   Nimb-1_AAe  repbase;    DNA;    INV; 6101 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Nimb non-LTR retrotransposon from Aedes aegypti.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6101
RA   Kojima K.K. and Jurka J.;
RT   "Nimb clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1428-1428 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..2092
FT                 /product="Nimb-1_AAe_1p"
FT                 /translation="MANMATAKNHPPDPPPEGIPGPSYVNHNDRTVPEWMD
FT                 RLGMHGQRIILSLRPAGNTPLPNPWIIGKSIENASGRSKLESAETEDKGTK
FT                 YILKTRNAEQAKKLMQMTELIDGTKVEIILHPFLNSCRCVVSCREVIDMTE
FT                 SELLNELTPQGISGVRRISRMDGNQKINTPTLILTVCGTVAPKRIFFGPLS
FT                 APTRLFYPRPMICFNCCEFGHTRVKCQKMPACTNCSGNAHVEGQQCNQVPY
FT                 CKNCQGDHAPVSRKCPWYAKEEKIIKIKVEAGVSFGEARKEYEKLHGKESY
FT                 AAVSGAQARIEKIQKDNERDNEIRTLKDEIVKLREANNKISNDEKDREIAS
FT                 LRKEIEGLRKVIEGMSQNRVVLGKQRFNLDISETEGLASETEPQNTEPEAM
FT                 EDEDIYELRGSKEQNGRKRGKNVESESDNSKSSDKFEEKQGNQSKSNNTKR
FT                 GRPPKHRKNDQRK"
FT   CDS           1905..5993
FT                 /product="Nimb-1_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKISTSFVVAKSKTEESEEKMLNRKVTIVNPAINSRK
FT                 SKAINRNRTTPNEEDHQNTGKMINENKTCISNHINTDPCRNNDYEHGNLME
FT                 SRSNLETAVGNIEGEIETQPGPKHQHNSCEPSIISWNIQGLKTGRPEIKVI
FT                 NNERQPLAYCLQETMCSTEDQARIRGFVTFHRKRTGGRRASGGVLIAVKVG
FT                 LDCQEIDVESEIEAVAVKVGHPLNTSILNVYIPPGKPIEESEIVNLINQVQ
FT                 APLLVVGDVNANHPLWGSPSSNARGRVLEAAFNECNLAILNNGEATHIHHA
FT                 NGNASCIDIACSTSDLAGSLTFEVIADSHGSDHLPLIITFPATERPIKSRK
FT                 RWKIDEADWQTYQNMVHFKNLPNVDDQIGEIARAILDAAESSIPKTKGIKS
FT                 GKTPVPWWNREVADAIKNRRKALRNLKSKGKKHSNKDELLKKFQEARKTAK
FT                 ETVSRAQHNSWQNFVNGFSVHTPTKEMWSNFQRVQGKRTNSRIFSIKADGN
FT                 TVTEDGEIADALAQAFQTVSSNNSYPKDFQTYKTTVENQPLQYPENNDAEY
FT                 NKPFSVYELEQALEGLRGSTPGEDQIHYKMISMLPYDCKTTLLKAYNQLWG
FT                 ESKYPDSWRQSTVVPIYKGKGDRSNANNYRPIFLNSCLGKVMERLINNRLI
FT                 HILESRELLSKYQYAFRKGKTTVDHLTEMEMIIREAFVKKEYAYAVFLDVT
FT                 KAYDTTWRRLVLNRLSEWKIGGKLLKFLETMLHRRNFKVLANGHLSSERPM
FT                 QTGLCQGSVLSVTLFLIAIDTITSIMPSGIRILLYADDIVILATGINSKAV
FT                 QDQLQHALDLIQEWQGKTGFNISPGKSVLVVFRKHRKRKPKTKITLSLNNQ
FT                 IIPQKKYHKCLGVIFDETLQFDEHVEEVKAACKQRIQILRAVAGRSWGADR
FT                 TTLVKLYRATTVEKILYAAPIVSACNSNTLKKLETVHNAGLRTICGAFRTS
FT                 PILSLHVETGIPSINTLLKQRTAIHAVKNTDVCSTETINSSVGSSCCTTSS
FT                 EESSGEMWGTNTVEFPETAQLRGQRVIDEMQLDLPPVSRYTTPKIPPWERI
FT                 KIPLDNGILNAAREGIPQVAMRNLFTSIKSTKYRIYNVIYTDGSKRENRCG
FT                 YSVVCDEHIIRRRIYGNSSIYAAECAALKEAFQWIVNNEHVGAYLICTDSL
FT                 SAVSTLEKHKIKNKWHDEMIQLYRSIRETGNDIKIMWIPSHIGIIGNEKAD
FT                 CEAKRALGDPYETVTSIDYKEIKTVIKNQIILQWQALWSATRDNKLREVKP
FT                 SVKPYSSAFIGNRKDDVVLARIRIGHTKITHQYLMNKEPPPNCQFCNALLT
FT                 VRHLVTDCPVLDEERQKLNISTSLQNVLEDNLDKAKNVIQYLKNIDMYKQI
FT                 "
XX
SQ   Sequence 6101 BP; 2160 A; 1234 C; 1316 G; 1391 T; 0 other;
     cagtttcgag ttacatctgt gatcgaaaag cagaagccga ttcgtatcta atttttgaag        60
     cctttttacg acgtttttag aatacgagaa atcgatctat agtgttcggt cgttataaaa       120
     acatatttgc gtgttttgaa cagtggagta taattaaaat tgcagctaat tggtgcattt       180
     taaacggatt tagagttgcc gaatataacc aacgccattg aaaacagttt tgcttgacaa       240
     acaaaaccta cagtcgataa agctaccccg gtacaaagcc gactagcaat agcaagcttg       300
     tgtactattt tgcacacaag atttgctacg ggagttgctc actgctaggc gcaatcgaaa       360
     gctctaccat ctcagcacac tacccgcttg tagtggagca ataactgttt cgagcagcgg       420
     tagaggacaa attttgctag ctggaccttt ggacgtttag ctagcaaagg tctaggaaaa       480
     acgtcccttt cacggttgga ccttcaaacg cttgatcgtg ttagtatagg ataaagcgta       540
     gccgccatcc acttcggtgg agtcgcaaaa cttgttgcct ggaccttaac ccttgggcaa       600
     tcaagtaaca gcaggtaaaa gggtagtcgt tacttgccta ggcaagagcg tgaagtattt       660
     cttcgaccgg ctcatcaaca ctcacagaca tctgacgcac gcaacgtgat tcaggctgat       720
     ggccaacatg gccacagcaa aaaatcatcc cccggacccc cctcctgaag gtatacctgg       780
     ccctagctac gttaaccaca atgatcgaac agttcctgaa tggatggatc gattgggaat       840
     gcacgggcaa agaataattc tatcgctacg cccggccgga aacacacccc taccaaaccc       900
     atggataata ggaaaatcta tcgagaatgc tagtggacgc agcaaactag aatctgcaga       960
     gaccgaagat aaagggacca agtacatcct caaaacaaga aatgcagaac aagctaaaaa      1020
     actgatgcaa atgacagaat tgatcgacgg aacaaaagtg gagatcattt tgcacccttt      1080
     tttgaactcg tgtcgatgtg tagtaagctg tcgtgaagtc atagatatga ctgaaagtga      1140
     attgctgaac gaacttactc cacaagggat aagcggtgtc agacgaattt cacgcatgga      1200
     cggaaatcaa aaaatcaata ctccaacttt gattttgact gtttgcggaa ctgttgcacc      1260
     gaagcgcatt ttctttggac cattgagtgc tccaacaagg cttttctatc cgcgtcctat      1320
     gatatgcttc aattgttgtg agtttggtca cactagagtt aagtgccaaa aaatgcctgc      1380
     atgcaccaac tgctctggaa acgcacacgt agaaggacag caatgcaacc aagtacctta      1440
     ctgcaagaac tgtcaaggag atcacgcgcc agttagccga aagtgcccgt ggtacgcgaa      1500
     ggaagagaaa atcattaaaa tcaaggtcga agctggggta tctttcggtg aggctcgtaa      1560
     agagtacgag aaactgcacg gaaaggaatc atatgctgct gttagtggcg ctcaagctag      1620
     aatagaaaag attcaaaagg ataatgaaag agacaacgaa atcagaacac taaaggacga      1680
     aattgtcaag ctacgggaag ccaataataa aatttccaat gacgagaagg acagagagat      1740
     cgcaagtctc cgaaaggaaa ttgaaggact gagaaaagta attgaaggga tgagccaaaa      1800
     cagagtcgta ttggggaaac agcgttttaa tctggatatt tcggaaacag aaggactagc      1860
     ttctgaaacc gaaccccaga acacggaacc ggaagcaatg gaagatgaag atatctacga      1920
     gcttcgtggt agcaaagagc aaaacggaag aaagcgagga aaaaatgttg aatcggaaag      1980
     tgacaatagt aaatccagcg ataaattcga ggaaaagcaa ggcaatcaat cgaaatcgaa      2040
     caacaccaaa cgaggaagac caccaaaaca ccggaaaaat gatcaacgaa aataaaacat      2100
     gcatctccaa tcacatcaat acagaccctt gcagaaacaa tgattatgaa cacggaaacc      2160
     taatggaatc aagatcgaat ttggaaacag cagtaggaaa tattgaagga gaaattgaaa      2220
     cacaaccagg tcccaaacac caacataatt cctgtgaacc ctcaataatc tcttggaata      2280
     ttcaaggact aaaaacagga cgtcctgaaa ttaaagtgat caacaacgaa aggcaacctt      2340
     tagcatattg cctccaagaa acaatgtgct caacagaaga tcaagctcga atcaggggat      2400
     ttgtaacatt tcatcgaaag cgtactggag gtagaagagc atcaggaggc gtattgattg      2460
     cggtcaaggt tggattagat tgtcaggaga ttgatgtgga gagcgaaatt gaagcagtag      2520
     cggttaaagt ggggcacccg ttaaatacgt ccatccttaa cgtgtatatt ccgccgggaa      2580
     aacctattga agaatcggaa atcgttaact tgattaatca agtccaagcc cctttattag      2640
     tggttggaga tgtcaacgca aaccaccctc tgtggggttc accttcaagt aatgcccgag      2700
     gacgagtgtt agaagcagct ttcaacgaat gtaatttagc tatcttgaat aacggagaag      2760
     caactcatat tcaccatgca aatgggaacg cgtcttgcat cgacatagca tgcagtacga      2820
     gcgatcttgc tggatcgcta acattcgaag taattgctga ctcgcacggt agcgaccatt      2880
     tgccacttat tattactttc ccagcgacag aacggcctat caagagtagg aaaagatgga      2940
     aaatagatga agcagactgg caaacttatc aaaatatggt acattttaaa aaccttccta      3000
     atgttgacga tcaaatcgga gaaatcgcca gagctatttt ggatgcagca gaaagttcca      3060
     taccaaaaac gaaaggaatc aaatctggaa aaactccggt tccgtggtgg aaccgtgaag      3120
     tagcagatgc cattaagaac cgcagaaaag ctctgcgaaa cttaaaatca aaagggaaaa      3180
     aacattcaaa caaggacgaa ctgttgaaaa agttccaaga agcgcgtaaa actgcaaaag      3240
     aaacggtatc aagagctcaa cataattcgt ggcaaaattt cgtcaatgga ttttcagtac      3300
     acacacccac aaaagaaatg tggtcaaatt tccaacgtgt tcaaggaaaa cgaacaaact      3360
     ccagaatatt ctccataaaa gctgatggaa atacggtcac tgaagacggg gaaatagcag      3420
     acgccttggc acaggccttc caaactgtat ccagcaataa cagctaccca aaagatttcc      3480
     aaacctacaa aacgacagtg gagaatcaac cgttgcagta tcctgagaac aatgacgctg      3540
     agtataacaa accattttca gtgtacgagt tagagcaagc tctcgaagga ctaagaggat      3600
     caacaccagg agaagatcag atacactaca aaatgatttc catgcttcct tacgactgta      3660
     aaactaccct tctgaaggca tacaatcagc tttgggggga atctaagtac cccgatagct      3720
     ggcgtcaatc aaccgttgtt ccaatataca aggggaaagg tgatagatcg aacgcgaaca      3780
     actatagacc aatattcctt aacagttgct tggggaaagt aatggaaagg ttaataaaca      3840
     accggctcat ccacatccta gaatctaggg aactgctaag taagtatcag tatgcattta      3900
     gaaaaggcaa aacgacagtt gaccacttga ctgaaatgga aatgattatt agagaagctt      3960
     tcgtcaaaaa agagtatgct tatgcggtat tcttagatgt aacgaaggca tatgatacaa      4020
     cttggcgtag actagtgttg aacaggttga gtgaatggaa gatcggggga aaacttctca      4080
     aattcttgga gactatgctt cacagaagaa attttaaagt cttagctaat ggtcacttgt      4140
     catcagaaag acctatgcag acgggcctct gccaaggatc agtgctcagc gtaacattat      4200
     tcttgatagc aattgacact attacaagta ttatgcctag cggaattaga attttgttgt      4260
     atgcagatga catagtaata ctagcaaccg gaatcaattc taaagcagta caggatcagc      4320
     tacagcacgc actcgacctc atccaggaat ggcaggggaa aactggattc aatatatccc      4380
     ccggaaaaag cgttttggtt gttttcagaa aacatcgaaa aaggaagcca aagaccaaaa      4440
     ttaccttaag tctcaacaac caaatcatcc cacagaagaa gtatcacaaa tgccttggtg      4500
     taatattcga tgaaaccttg caattcgatg aacacgtgga agaagtcaaa gcagcatgta      4560
     agcaacggat tcaaattctt cgagcagtcg ctggtagatc gtggggagca gacaggacta      4620
     cactcgtcaa actctatcga gcaacgaccg tagaaaaaat attatacgca gcaccgatcg      4680
     tctcagcatg caatagcaat acacttaaaa aactagaaac ggtacataat gctggtttaa      4740
     ggacaatttg tggagctttc agaactagcc ctatcttaag tctacatgtt gaaacaggaa      4800
     tccccagtat caatactctg ttgaaacaac gcacagctat acatgcagtc aaaaatacgg      4860
     acgtgtgctc gaccgaaacg attaattcat cagtaggatc atcatgttgt acaactagca      4920
     gcgaggaaag ttcaggtgag atgtggggaa caaatacagt agaatttcct gaaacagcgc      4980
     agttgagagg gcagcgagta attgatgaaa tgcagcttga tctacctcca gtgagtaggt      5040
     acactacacc taagattcca ccatgggaaa ggataaaaat accacttgac aacggtatac      5100
     tgaatgctgc tcgagaaggt ataccacaag tagcgatgag aaacctgttc actagtatca      5160
     agtcaacaaa ataccgtatt tataatgtca tctacacaga tggctcaaaa cgtgaaaacc      5220
     gctgcggata tagcgtggta tgtgatgaac acatcataag aaggcgaatt tatgggaaca      5280
     gcagcatata tgcagccgaa tgtgcagctc taaaagaagc gttccaatgg atagtcaaca      5340
     acgaacacgt tggagcatac ttaatatgta ctgattcgct cagcgcagtt tcaactttag      5400
     aaaaacacaa gattaaaaat aagtggcatg atgaaatgat ccaactttat cgtagtatca      5460
     gggaaacagg aaacgacatt aaaattatgt ggattcccag ccacattgga ataataggca      5520
     acgagaaagc agattgcgaa gcaaaacgtg cactgggtga cccttacgaa actgtaacat      5580
     cgattgacta caaagaaatc aaaaccgtca ttaaaaacca gatcattctt cagtggcagg      5640
     ccctctggtc tgcgacgagg gacaataagt tacgcgaagt gaaaccctct gttaaaccct      5700
     actcatcagc attcatcgga aatcgaaagg atgatgtagt tctggctcgc attcgtatcg      5760
     gacacaccaa gattactcat caatacttaa tgaataagga gcctccacct aactgtcagt      5820
     tctgtaatgc gttattaaca gtgagacatt tagtcacaga ttgcccagta ttagacgaag      5880
     aaaggcaaaa attaaacata tccaccagcc tccaaaatgt tttggaagat aatttagaca      5940
     aagcgaaaaa tgttattcaa tatcttaaaa acatcgacat gtataaacaa atttgaaatc      6000
     cctaacgata tgtccaagat gtttgtaatt ttatactaca gtggatccga atgacaatag      6060
     ttaaaagatc cactttaatc aataaataaa taaaaaaaaa a                          6101
//
ID   Nimb-1_BTa  repbase;    DNA;    INV; 5572 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5572
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 726-726 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           214..1740
FT                 /product="Nimb-1_BTa_1p"
FT                 /translation="MKPATGKKAPSSASSSSLKDNAAEVSADPSQSNLTSS
FT                 PVDQTTTISSSPCPDVNKTHNPPPLHKPPGNLSFAQAVSTSSSSSSNTNNL
FT                 TKEHAIIIPVIDQLTLLDYLRAVGEFVPPKEIIYASRISNGRMCMYLSEIK
FT                 WVDTIVAQNNIITKQGPLRVRRMINPTIRLTLSNVNPLIPHSKIINALTEF
FT                 VIPCSQLQHVTAGVRDHDFSHVLSFRRQIFVQFEEGRPKLPDSILLQHGEE
FT                 EVRIFINIDDPRHRSNTLQPSKKPHFNETSNPTLADRLESARSLSKTPELI
FT                 VKDVESASMSQTSAKNVEESCQFQETDLMETEILVPDRNADNDKLALKNDP
FT                 KIECPTPIITSKSDVSILENNPESAKKRKPTSPLQTPLSPHKKNNTQNLSS
FT                 KTKKNVPIVDSLSESSDDDLESKHWDLKSAIKKAVEKHPFSMDYEEILVLL
FT                 EETKGKRKPSPIIRKYTSDYEGILKVLSSAHNCPVTPDLKGRLSRLISVLH
FT                 SIKQDCPSGDSDK"
FT   CDS           1763..5467
FT                 /product="Nimb-1_BTa_2p"
FT                 /translation="MLLQWNLNSAFQRRTELRKLIRDHDPLIIALQETQLN
FT                 PSQSFDIRGYQTFRKDFLGGIRSCNGVATLVKECCQNKLIPLNTELQALAI
FT                 QVSLQFKLTICNIYIPPNTKLILRDLENIIKQLPTPYILCGDFNAHNILWG
FT                 SDSISTKGRLIETLLDNHGLLLHNDGSYTHFSSATGTFSAIDITLSSPTIG
FT                 SSITWRVHNDLCSSDHFPIFTSLGYEREVSSRASKWVIQKADWTKFSNSIT
FT                 LQPPDEHYTCHDMLANLTEQILKAAHSSIPRTSTKMTRPPVPWWNDQCQKT
FT                 IRNRRKCLRFYKKNPTLENLIAYKKARAIARRTIKASRSESWQTFVKSINT
FT                 NTSSAQVWSQIKKIVGRPPPTHILSLESQNGEILTDTQQITDELANHFCSV
FT                 SNNDHYSEDFLNFKNQEEQKKLDFNSDNLEQYNLPFSAQELNDAIAVLNNT
FT                 APGPDEIHNLMIKNLPTECKEYLLQTLNGFWTSNQFPQQWLESTILPISKP
FT                 GKDRTKPTSYRPISLTSTLCKLYERMVNRRLTWTLDQNECWNNIQSGGRKR
FT                 RSTIDHLLKIQSTIQNGFLKKLDTYAIFFDLEKAYDTTWRYNILKTLHKWG
FT                 FRGHLPLMISEFLQRRICRVRLGTCFSEVFELLNGIPQGSVLSCTLFAIAI
FT                 NSILECVPKPVQSSLFMDDFCIYISSKNIKIAKKLLRITVSRLQSWSNQTG
FT                 FRFSVQKTIGMIFSRKRNNPSTPTIFLMGEKIPFKTSVVYLGLIFDRKLTW
FT                 AKHIENLVAKCKKAMNILKYLANTQWGCDRETLLTLYRSLIRSKIDYGSFV
FT                 YQSAAKTYLRALDVIHSSSLRIVLGAFRTSPSICLCAEAGEPPLQWRRQIL
FT                 LSGYLTKVMTSSNHPTYPHMICDAIEVTDTVKPISYVTKQLIDKLKTKYSL
FT                 DQLQLSPNETLSCPPWMYNIDTVNLDLAAYQKGNTSSTFYKERLNQLLCQN
FT                 FPDYKQIFTDGSKQETSVGLAFVDTSNNFILKQKLSPLNSIFTAEMLAILE
FT                 AIRYVQELSSCNNDTINYVICSDSLSSLRTLKYNPTNHPFSMLIHDTVHSL
FT                 LANGHSTSFIWVPAHIGILGNETADRAATEACSLQNITHHPFTQQDAKKAM
FT                 CELITKSWEQEWSTSEQNRLRRAPMPYPRTSNHKSRSCEVQIARLRIGHTF
FT                 FTHYHIISKENQPTCHFCNSSPLTIKHILMDCSSLRHHQSQIYSPSFNRNT
FT                 NPLTCDEPNIATKILKLFTSLNLKI"
XX
SQ   Sequence 5572 BP; 1831 A; 1278 C; 871 G; 1592 T; 0 other;
     tctgaaggct ggtcgcgttt tcatcgggct ccgatgttta gtgcattttt ggcttcccgg        60
     gttcgtaaag ttattatctg ccagtacaat gtgcaacgtt tgacttcagc cgccttcctg       120
     ctcttttgta cagagtgaat tctgtttaat cctctcaaat tagtgcattt ttactgtgca       180
     attttctctt aacctccgaa aaagtgaagt gccatgaagc cagccacggg aaaaaaagct       240
     ccctcctccg cctcatcatc ttcgctcaaa gacaatgcag ccgaggtatc agctgatcct       300
     tctcaatcaa atttaacctc ctctccagtc gaccaaacaa caacaatctc atcaagccct       360
     tgcccagatg taaacaaaac ccacaatcct cctcctctcc ataaaccacc tggtaacctc       420
     tctttcgcac aagctgtatc cacctcctcc tcatcctcct ccaacaccaa caacctaacc       480
     aaggaacacg caattatcat tcctgttatt gatcaattaa cattgcttga ctatctccga       540
     gcagtaggtg agttcgttcc tccaaaagag attatctatg cttctcgaat ctcaaatggg       600
     agaatgtgca tgtatttatc ggaaattaaa tgggtggaca caattgttgc ccaaaataac       660
     attatcacta aacaagggcc tctgagagtg cgccgaatga ttaacccaac aataagattg       720
     acactgtcta atgtcaatcc attaatccct cactctaaaa tcatcaatgc tctcaccgaa       780
     tttgtaatac catgttctca actgcagcat gttacagctg gagttagaga ccatgatttc       840
     tcacatgttt tgtcttttag aagacaaatt tttgtacaat ttgaagaggg tcgtccgaaa       900
     ttgcctgact caattcttct tcaacatgga gaagaagagg tgaggatttt tattaatatt       960
     gatgatccaa gacatcgatc taataccctt caaccctcga aaaaacccca ttttaatgaa      1020
     acatctaatc ctactcttgc cgatagattg gaatcagctc gttctttgtc aaaaactccc      1080
     gaattaatag ttaaggatgt cgaatcggca tctatgtctc aaacgagtgc taaaaatgtt      1140
     gaggagtctt gtcagtttca agaaacggat ttgatggaaa ctgaaatttt agtgcccgat      1200
     agaaatgccg ataatgacaa attagcactt aaaaatgatc cgaaaattga atgtccaact      1260
     cccataatca cctcaaagtc tgatgtgtca atcttagaaa ataaccccga atcggctaaa      1320
     aaacgtaaac ctacttctcc actccagaca ccccttagcc cacataaaaa gaataacact      1380
     cagaatctat cctccaaaac taagaaaaat gtcccaattg ttgattctct ctctgaatcg      1440
     tcagatgatg atcttgaatc aaaacattgg gacctaaaat cagccattaa gaaagctgtt      1500
     gaaaaacatc ctttctcaat ggattacgaa gaaatccttg tactcctcga ggaaacaaaa      1560
     ggaaagagga agccttcccc tatcatcaga aagtatactt cagactatga aggcatactc      1620
     aaagttctgt ccagtgctca caactgtccc gtcaccccag acctcaaagg acgattgtct      1680
     cgcttaattt ctgtactgca ttccataaaa caggattgcc catcaggcga ctctgataaa      1740
     taaattccca aacaaagcag atatgttact tcaatggaac ttaaatagcg cgttccaacg      1800
     gcgcactgaa cttagaaaac ttattagaga ccatgatcca ctcattatcg ctctccagga      1860
     aacccaacta aatccaagtc aatcttttga tataagaggt tatcaaacct tcagaaaaga      1920
     ttttctgggg ggaattcgtt catgtaatgg tgttgctact ttagtcaaag aatgttgcca      1980
     aaataaattg atccccctca ataccgaatt acaggctctt gctatacaag tttctctaca      2040
     atttaagctc acaatatgca atatatatat tcctccaaat accaaattaa tattacgtga      2100
     tttagaaaat attattaagc agttgcccac gccttatatt ttgtgtggag attttaatgc      2160
     acataatatt ttgtggggat ccgatagtat ctccacaaag ggtagattaa tagaaacatt      2220
     gctagacaat catgggctcc tcctacataa tgatggatca tatacacatt tttcatcagc      2280
     aactggcacc ttctcagcaa tagatattac tcttagctct cctaccatag gatcgtcaat      2340
     tacatggcga gtgcacaatg atttgtgctc gtctgatcac tttcctattt tcacttcttt      2400
     aggttatgaa agggaagtat cctcacgtgc aagcaaatgg gtcattcaaa aagcagactg      2460
     gactaaattt tcaaattcta taacattgca gcccccagat gaacactata cttgtcatga      2520
     catgcttgcc aatctaactg agcaaatatt aaaggcagct cattcttcaa tacctaggac      2580
     atcaacgaag atgactcggc cccctgtccc atggtggaat gaccagtgcc aaaaaaccat      2640
     tagaaataga agaaaatgcc tgcgtttcta taaaaaaaac ccaacattag aaaatttaat      2700
     tgcctataaa aaagccaggg caattgcccg acgcacgata aaagccagtc gatctgagag      2760
     ctggcaaacc ttcgtaaaat caataaatac taacacatca agtgcccaag tttggtcaca      2820
     aatcaaaaaa attgtgggac gtcctccccc aacccacatt ttatctcttg aatcacaaaa      2880
     tggtgaaata ttgaccgata ctcagcagat cactgatgag cttgcaaatc atttctgttc      2940
     tgttagcaat aatgatcact actctgaaga tttcctcaac tttaaaaatc aggaagaaca      3000
     gaaaaagctt gattttaatt ctgataattt ggaacagtac aatcttcctt tctctgctca      3060
     agaattgaat gatgctatcg ctgtattaaa taatactgcc ccgggtcctg atgaaataca      3120
     taatctcatg attaaaaatc tacctactga atgtaaagaa tatttgttac aaactctaaa      3180
     cggtttttgg acttctaacc aattcccaca gcaatggctt gaatcaacca ttctcccaat      3240
     ttctaaacca ggtaaggaca gaaccaaacc cacaagttac aggcctatct cccttacctc      3300
     taccttatgt aaattatatg agcgcatggt caatagaaga ttgacatgga ccctcgatca      3360
     aaatgagtgt tggaataaca ttcaatcggg gggaagaaaa agaagatcaa caattgatca      3420
     tctactgaaa attcaatcaa ctattcaaaa tggatttctt aaaaaattgg atacttatgc      3480
     cattttcttt gatttagaaa aggcatatga cactacatgg aggtacaaca ttctcaagac      3540
     gctccataaa tggggctttc gcggtcatct tccacttatg ataagtgaat ttttacagcg      3600
     aagaatatgc cgtgtgagat tgggaacctg cttttcggag gtttttgaac ttttgaatgg      3660
     gattccccag ggtagtgttc taagctgtac actttttgca atcgctatca attcaattct      3720
     agaatgcgtt ccgaaacctg tacaatcctc cctttttatg gacgattttt gcatctatat      3780
     ttcatctaaa aatatcaaga tagcaaaaaa actactcaga ataactgtaa gtagacttca      3840
     aagctggtcc aatcaaactg gtttccggtt ttctgtacaa aagaccattg gaatgatttt      3900
     tagtcgtaaa agaaataacc catccacccc aaccattttt ctaatgggag aaaagatacc      3960
     ctttaaaaca tctgttgtct atttaggact tatttttgat cgaaaactaa catgggctaa      4020
     acatattgaa aatcttgttg cgaaatgcaa aaaagcaatg aacatactta aatatcttgc      4080
     aaatactcaa tggggatgtg acagagaaac tttactcaca ttatacagaa gtttaataag      4140
     atctaaaatt gattacggat ccttcgttta tcaatctgca gcaaaaactt atctacgggc      4200
     attagatgtc attcactcat catctttacg tatcgtactc ggtgctttcc gaactagtcc      4260
     ctctatttgt ctgtgcgccg aagcagggga accgcccctt caatggagaa ggcagatcct      4320
     acttagtggc tatctcacta aagtcatgac atcttcaaat catcctacct atccacatat      4380
     gatatgtgat gctattgaag tgacagacac tgttaaacct atttcttatg tcactaagca      4440
     gctgattgat aaattgaaaa caaaatacag cctcgatcaa ctacaacttt ctccaaatga      4500
     aaccctttcc tgccccccgt ggatgtacaa tatcgatact gtcaatttgg acctagctgc      4560
     ctatcagaaa ggaaacacat caagtacatt ttacaaggaa cgactaaacc aacttttatg      4620
     tcaaaacttc cctgattaca aacaaatttt cacagatggt tctaaacaag aaacatcagt      4680
     aggattagca ttcgtagata catcaaataa ttttatcctg aaacaaaaat tatctccgtt      4740
     aaattctatt ttcacagctg agatgctggc tattctcgaa gcaattagat atgtacaaga      4800
     acttagttcc tgtaacaatg ataccatcaa ttacgtcata tgctctgact ctctttcctc      4860
     actccgcacc ttgaaataca accctactaa tcatcccttt tcaatgttaa tccatgatac      4920
     tgttcattcc ttattggcca atggccactc cacctctttt atctgggtac cggctcatat      4980
     aggaattctg ggaaacgaaa cagcggacag agcagccact gaagcatgct ctttgcagaa      5040
     catcactcac catccattca ctcagcaaga tgctaaaaaa gctatgtgcg aacttatcac      5100
     aaaatcgtgg gaacaagaat ggagcacaag tgaacagaat cgtctccgta gagcccccat      5160
     gccatatcca agaacatcta accacaaatc aagatcatgt gaagtccaaa ttgcgcgtct      5220
     caggataggt cacacttttt tcactcacta tcatatcata tctaaagaaa accaacccac      5280
     ctgccacttc tgcaattcat cacctctaac catcaaacac atacttatgg actgctcttc      5340
     cctccgacat caccaatcac agatctactc cccttcattc aacagaaata caaaccctct      5400
     tacatgcgat gaacctaata ttgccaccaa aattctgaaa ctctttacct ctcttaattt      5460
     aaaaatctaa attttcgttt atactcctat atattttcaa aattacctgt aaagacgtta      5520
     atagcctgag tcgctgaatg tctcaaaatt ataataacta actaactaac ta              5572
//
ID   Nimb-1_CQ   repbase;    DNA;    INV; 5402 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Nimb non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5402
RA   Kojima K.K. and Jurka J.;
RT   "Nimb non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 581-581 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           350..1714
FT                 /product="Nimb-1_CQ_1p"
FT                 /translation="MASSGGGMYAFPPTLDPSWSLKGSSRYVTVQAPNKGS
FT                 LATVNIFLVTKSIRACATVEDIRKNFKAGTYTVRVPNEAQAKQLKDKLTVL
FT                 GDQITKVEVVDDEFRNTSRAVISCRDLIGVTEEQIVEELSEQGIKAARHLK
FT                 KGVNKVETGSVVITFNKPHPPERVQVACHSVAVRPYYPPPALCYGCFEYGH
FT                 ISKNCRGAKACANCSGPFHGDNIDCPNPAKCKHCGEGHAATNRQCPKRKTE
FT                 EEIVRIKIDRNIPYHEARKLLESRTNAGNYAKVAAAGSMNTAEQVNIEEEK
FT                 NKWLSEIKKKEESLKVLELKYEQKFEEMLKKQSEVDQSYLKLQKCFEKSSM
FT                 QIEYLTKELENKQHYITLLEQKVKTLTSNKMTPNEERRPMPTKRDRSSEAK
FT                 KNDELDSDDSNRSRSPAPKTLAIETTTTSKDDLISLSETIYVEVESSSSME
FT                 FDPNSISPNS"
FT   CDS           1666..5325
FT                 /product="Nimb-1_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="IFQLYGVRPELHLAKFLIQWNCNGVRSKHAEIQLLIN
FT                 KHKPTVIALQEVKLQHQNYSIKGFSIFSKLRSNHGGGVMLAVRDGVDAEQV
FT                 TLQTTLEAVAVKIDIPVKATVCSIYIPPNEEITRSDIEDLLEQLPGPVILA
FT                 GDLNAKNELWSNDDDARGRTLASTFEETNLVVLNDGADTYQPHQACQSPST
FT                 PDITACSAPLASRLNWKLAEDVHSSDHFPILVGFSGVSVPEKRRQSWIIPS
FT                 ADWNKFELDVYNSINPEQQYTIEELTAVIISAAEASIPKTKEDIHPRSVPW
FT                 WNERVAEAVKQRRRALRQLQSVRKQRRVNETLIQAAHEEFKQARMKARKVI
FT                 EEEKSRSWQEYVSTINEDTPPSEMWRKIRSISGKRSSTRTWSVKVGDRQTS
FT                 DSKEIAEHLAEFFEQSSSDSSYPDDFRTRKTRVERRPFSFPGDRGANYLQT
FT                 FSKDELLTQLNDLSGSSPGPDGVHNTMLQHLPAIGKDKLLDAYNSIWTSNT
FT                 FPATWKETILVPIPKPGKNPNIPGNLRPIHLSSCVLKLFERMINRRLMDTL
FT                 EERNVFGQHQAAFRKGRQTLDTLASIESYGKNAIATKKHAEFLFLDIEKAY
FT                 DRTWRRLILEGLAKARIGGHMASFCSRFLEDRRFRVHFNGEVSSLKVLQNG
FT                 VPQGSVLAVTFFLLAIDSIRQYIDRDVFLELFADDITLGVSDVNVRRARQK
FT                 LQTVVNAIARWSKETGFKVAISKTAAMHVCFKRFHAKKQPTLKLENQEVEF
FT                 VGSHKVLGVWLDYRLSFKRHLAKTKAECRRGLNLMRCLGKTKFGADRVTMI
FT                 HLIRATLLPKLLYGIPITSGAGESEYMKLAPVYHEAIRLATGAYRSSPIDS
FT                 ILADSGLLPFNFLVDEHLILYSTRQLARNRINRNYPVALRARTTATKLNVN
FT                 MSQVIVADAPAPNDWVLKRGTCRADRFGCEPPAVQRAVFRQTVGELYPNHA
FT                 QIFTDGSLNETGGVGCGVYSSSTSRSITLPSQLTIFSAEAYAILEAIELAK
FT                 RNPHQTVIFSDSKSVISAVKGNKTHHPWVVKIRRELARLRDSVELCWVPAH
FT                 CDIDGNEKADELAKTGASSTQNAELEEIPYPDFKLCVKKLLRQRWNQLWYS
FT                 CDTKLRRIKESSTEWLSSRTLTRRDSRAITRLRIGHTHLTHGHLMANCDPE
FT                 PCETCGETTTVQHILVDCRKFEHQREESGIANSLYVALGDNLDEIGKTLEF
FT                 LRISNLYCSI"
XX
SQ   Sequence 5402 BP; 1714 A; 1380 C; 1242 G; 1066 T; 0 other;
     aaagtgacgt tcggttgaat aaacaagcgt ctgcgttgct ctgccaattt cgagcgattt        60
     tgtcagattt aaaagtgatt tagttatcga actaactgca aacttagcta aggacagtac       120
     agtggtgttt aaatagtttc gcagtcccag tgggccacca aaaagggccc gggccgaaac       180
     catccgtggt gtgctccgca aaggagaata cctaacctag aagagacaac aaaccaaagt       240
     gtaaacaagt gaagaagaac tgtaattttt gccaaaggaa gtacacaatc tcagccttct       300
     gagtgaattg tccgccaaag aggcgccctc cgagggagag gcggtcaaca tggcttcgag       360
     tggaggggga atgtacgcat tcccacctac ccttgaccca agttggagct tgaaaggttc       420
     atctcgttac gtgacagtac aagcaccgaa caaaggatct ctggccactg taaacatctt       480
     cctggttacc aaatctatcc gggcatgtgc caccgtcgag gacatccgca agaacttcaa       540
     agccggaacg tacacagtca gagtaccaaa cgaagcacag gctaaacagc tgaaggacaa       600
     gctaactgta cttggcgatc aaataacaaa agtagaagtt gtggacgacg agttccgaaa       660
     cacatcaaga gcagtgatct catgccggga tctaattggt gtaacggaag agcagatcgt       720
     tgaagaactg tcggaacaag ggatcaaagc tgcacgacat ctgaaaaaag gtgtgaataa       780
     agttgaaact ggatcggttg tgataacctt caacaaaccc cacccgccgg aaagagtaca       840
     agtagcatgt cattcggtcg cggtccgtcc atactacccc ccaccagcac tgtgctacgg       900
     atgctttgaa tatggccata tcagcaaaaa ttgtagaggt gcaaaggcct gtgccaactg       960
     ctctgggcct ttccacggcg ataacatcga ctgcccaaac ccagcaaaat gtaaacactg      1020
     cggagaaggc cacgctgcaa caaatcgaca gtgcccaaaa aggaaaaccg aggaggaaat      1080
     agtgagaatc aaaatcgacc gaaacatccc ttaccacgaa gcgaggaaac tccttgagag      1140
     caggacgaac gccggaaact acgccaaagt cgctgcagcc ggctctatga acacggctga      1200
     gcaagtgaac attgaggaag aaaaaaacaa gtggttaagt gaaataaaga agaaggaaga      1260
     atcgctgaaa gtgttagaac taaaatatga acagaaattc gaagaaatgc taaaaaagca      1320
     aagtgaagtg gaccaaagtt acctaaaact acagaagtgc ttcgaaaaaa gttccatgca      1380
     aatcgagtac ctgaccaaag agctggagaa caagcagcac tacatcaccc tcctggagca      1440
     gaaagtgaaa actctcacca gtaataagat gacacctaac gaagaacgcc gccctatgcc      1500
     caccaagcga gatagatctt cggaagccaa gaaaaacgac gaattagact ctgacgacag      1560
     taaccgatcc cgatctccag cgccgaaaac gctggccatc gagacaacaa cgaccagcaa      1620
     ggacgatctt atttctcttt ccgagaccat ctacgtggag gttgaatctt ccagctctat      1680
     ggagttcgac ccgaactcca tctcgccaaa ttcctaatcc agtggaactg caacggagtg      1740
     cgatccaaac atgcagaaat tcaacttctt attaacaaac acaaaccaac tgtaatcgca      1800
     ctgcaagaag taaaactaca acaccaaaac tacagcataa aaggattcag catcttctct      1860
     aagctgcgat caaatcacgg cggaggagtg atgctggcag tacgagatgg agtagacgca      1920
     gaacaagtta ccctgcaaac gaccctagaa gcagtagcag taaaaattga catccccgtc      1980
     aaagccacag tgtgttcaat ttacattcca ccgaacgagg agatcaccag atccgacatc      2040
     gaggaccttc tagagcagct tccaggtcca gttatcttgg caggggattt gaacgcaaaa      2100
     aacgaactct ggagcaatga cgacgacgca cgcgggcgca ctttggccag caccttcgaa      2160
     gaaacgaacc tggttgtgtt aaatgacgga gctgacactt accaacctca tcaagcctgc      2220
     caaagccctt ctacgccaga tatcacagca tgcagtgcac cattagccag ccgactaaac      2280
     tggaagctcg ccgaagacgt gcacagcagt gaccattttc caatacttgt cggtttctca      2340
     ggagtgtctg tccccgaaaa aagaagacaa agttggataa taccctcggc cgactggaac      2400
     aagttcgaac tggacgtata caacagcatc aatccagagc agcagtatac catagaagaa      2460
     ctgacagcag taatcatcag cgccgccgag gcctcaatcc caaaaaccaa agaggacatc      2520
     cacccccgct ccgtcccgtg gtggaacgaa cgtgtagctg aggccgtcaa gcaaaggaga      2580
     cgtgccctac gtcagctcca gagcgtaagg aagcaaaggc gcgtaaatga aactctcatt      2640
     caagcagcac atgaagagtt taagcaggcg aggatgaagg caagaaaagt gatcgaagaa      2700
     gagaagtctc gttcgtggca agaatatgta tcaacaatca atgaagacac gcccccatcg      2760
     gaaatgtggc gaaaaattcg ttcaatatcg ggcaaaagat cgtccactcg cacctggtca      2820
     gtcaaagtcg gagaccgaca aacatccgac tcaaaagaaa tcgcagaaca tctagcagag      2880
     ttcttcgaac aaagctcgtc cgactcgtcg tatcctgatg acttccgtac ccgaaaaacc      2940
     agagtcgaaa ggcggccgtt ctcatttccg ggagatcgag gtgcaaatta cttacaaaca      3000
     ttctcaaagg acgagctact aactcagctg aacgacctct ctggatcttc tcctggaccc      3060
     gatggagtgc acaacacaat gctacagcat ctgccagcaa tcggaaagga taagcttctc      3120
     gacgcttata actcaatctg gacgagtaat actttccctg ccacgtggaa ggaaactata      3180
     ctggtgccaa tcccaaagcc cggaaaaaat ccgaacatcc ctggaaatct ccgcccgatt      3240
     cacctctcta gctgcgtcct gaaactcttc gagcgaatga taaatcggag gttgatggat      3300
     acgctagaag agcgaaacgt cttcggccag caccaggctg cgttccgaaa gggaaggcag      3360
     acattggaca cgctggcaag tatagaaagt tacggcaaga acgcgatcgc aacgaaaaaa      3420
     cacgcagaat ttctctttct ggacattgaa aaggcgtatg atcgaacatg gcgtcggctc      3480
     atcctcgaag gactcgctaa agctcgaatt ggcggacaca tggcaagttt ctgttcgaga      3540
     ttcctcgaag acagacgttt ccgtgtgcac ttcaacggtg aagtatcttc attgaaggtg      3600
     cttcagaatg gcgtacccca aggttcagta ctagccgtaa catttttcct gcttgccatc      3660
     gacagcatta gacagtacat cgacagagac gtcttcctgg aactgttcgc cgacgacatc      3720
     acgttgggag tctcggacgt gaacgtacgt cgagctcggc aaaaactaca aactgtagtc      3780
     aacgcgatcg cccgttggag taaagaaact ggcttcaagg tagcaatctc caaaacagct      3840
     gcgatgcacg tgtgcttcaa acgattccac gcgaagaaac aaccaaccct taagctagag      3900
     aaccaagaag ttgagtttgt tggatcccac aaagtacttg gcgtatggct agactaccgt      3960
     ttatcgttca aaaggcatct agccaaaacg aaggctgaat gcaggagagg cctaaatcta      4020
     atgagatgtc ttggaaaaac aaagttcgga gctgaccgtg tcaccatgat tcacctgatt      4080
     cgagccaccc ttctaccaaa acttttgtac ggtattccaa tcaccagcgg cgccggagag      4140
     agcgagtaca tgaaactcgc accagtctac cacgaagcca tccgtctcgc aactggagcc      4200
     taccgatcta gcccaataga cagcatccta gctgactctg ggctgctacc tttcaacttc      4260
     ctggttgatg aacatctgat tctctactca actcgtcaac tcgctaggaa caggattaac      4320
     agaaactacc cggtggccct gcgggccagg accaccgcca ccaaactgaa cgtcaacatg      4380
     tcacaagtca tcgtcgctga cgccccggct ccaaacgact gggtcttgaa gcgcggtacc      4440
     tgcagagctg accgttttgg atgtgaacca cccgcggttc aacgagcagt gtttcgccaa      4500
     actgttggag agctgtatcc gaaccacgca caaatcttca ctgacggatc gttgaacgag      4560
     actggcgggg taggctgcgg tgtctacagt tcgtcaacat ccagaagtat aacactgcct      4620
     tcgcaactga ctatattctc cgctgaagcc tacgcaatcc tggaagccat cgaactcgcc      4680
     aaacgcaacc cgcatcaaac cgttatattc agcgacagta agagcgtcat atcagcagtt      4740
     aaggggaaca aaacgcatca cccgtgggtt gtcaaaatcc gtcgagaact cgctaggctt      4800
     cgtgactctg tcgaactttg ctgggtccca gcacactgtg atattgacgg taatgaaaaa      4860
     gcggacgagc tagcaaagac cggtgcctcc tcgacacaaa acgctgaact tgaggaaata      4920
     ccatacccgg acttcaagct ttgcgtaaaa aagttgctgc gacaaagatg gaatcaactt      4980
     tggtacagct gcgacacaaa acttcgcaga atcaaagaaa gcagtacgga atggctgtcc      5040
     tccagaacac taacccgtcg agactccaga gctatcacca gactacgtat tggccatacg      5100
     cacctcaccc atggacatct aatggcaaac tgcgatccag aaccctgtga gacttgtgga      5160
     gaaacaacta cagttcaaca catcctagta gactgccgaa agttcgaaca ccaaagagaa      5220
     gaaagtggca tcgcaaactc actctacgtc gccctaggag acaatctcga cgagatcgga      5280
     aaaaccctgg agtttttaag gatatcaaat ttgtactgct caatttaacg caaacctcac      5340
     ttcggacccg aatgactctt gagttaagtg gtccttaaac gcaaataaat aaaataaata      5400
     aa                                                                     5402
//
ID   Nimb-1_LMi  repbase;    DNA;    INV; 5662 BP.
XX
AC   .
XX
DT   25-FEB-2014 (Rel. 19.11, Created)
DT   25-FEB-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5662
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3161-3161 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           524..1864
FT                 /product="Nimb-1_LMi_1p"
FT                 /translation="MVFHRKRKCKESHEVKDILDNSVPEQMTLPSTPKFLV
FT                 VTRTEEGQSFSSVNPFIIQKGVDAIAGPVKXCTRLRNGTLLLETESGSQAQ
FT                 RLLKANLLHSYPVRVELHPTLNYSRGVVYSACLDGLTEDELKDYLAAQGVI
FT                 AVHRVMKKENNVSVPTRTVFLTFDRVALPPKIKAGYEVVTVRPYIPNPTRC
FT                 YQCHRFNHTSQSCKNPVTCVTCGKDAHEGNCPPPSPHCINCNGNHAASSRE
FT                 CPVFADERAIQEIRVKEKVPIQVARKMYASRKPNTPPRGNYSTVVAAPPPT
FT                 RDMATQTCDLQFTTVVVKQSTSTTASSSTKSVNTSSKSSSSAVKPQIETRK
FT                 SKKEHSREDFLRTPSKTSEPTKELHQGSKKSSRGKTSPPPSTSQCDDGIPW
FT                 KPIVSPGASAKDGAADHPHAAAVVTSENMEQDPPVSDTTSCEHSHCGPPPS
FT                 SG"
FT   CDS           1897..5580
FT                 /product="Nimb-1_LMi_2p"
FT                 /translation="MDILQWNIRGIRSNWTELQLLTRTYHPIIFSLQETKL
FT                 LPGTRITFPRYTAVRFDLPPVAGIPAHGGVMLLIRDDVHSTPVPLCTPLQA
FT                 VAVRINLPGFIFTLCNIYAPSSFPVTRSDLLDLIDQLPRPFLLVGDFNAHH
FT                 PLWGSPRPCPRGSLLADILNHLQLICLNTGEPTYLSDSTNTFSHIDLSICT
FT                 AQLARRLEWSVLSDTHSSDHFPCVIHLMTPGTLEHPHRWQITKADWELYSS
FT                 LADFGTHQYPSIDDQVEHITTVILTAAECSIPCKTTQARRPLVPWWTAECR
FT                 DALRARRRALRTFKQRPTLDNCIRYKRLRAYCRRLFRDCKRASWRSFTSSF
FT                 NRSTPSSIIWGNLRKISGTMAHSPIPGLCVATDTIVDPPQIANALGRHFAE
FT                 VSSSSHYTDAFLTRKRTVEATPLPFTSQNRECYNAEFTVQELHHALSSSRS
FT                 SAPGPDGIHVAMLQHLSPTGLHFLLATYNRIWIEGTFPRRWREAIVIPIPK
FT                 PGKDKFLPSSYRPISLTSSVCKVMERMIHGRLVWWLETRHLLSNVQCGFRK
FT                 HRSAVDHLVALSTSVMNNFLRKRQTVAVFFDLEKAYDTCWRMGILRTLHTW
FT                 GFRGRLPIFIREFLTDRVFKVRVGSVLSSTFIQENGVPQGSVLSVVLFAVA
FT                 INSIADHLPPGVSASLFVDDFAIYSSSEQTGLLERRLQRCLDTLHTWSMDT
FT                 GFRFSADKTVCMNFWRRKEFLPPSLRLGPIVLPFVETTTFLGLVFDRKLSW
FT                 SPHISRLAARCTRSLNVLRVLSGTSWGADRSTLLHLYRTIVRSKLDYGSIV
FT                 YSSARPSILRRLNTIHHQGIRLATGAFYTSPVESLYAEAAELPLSYRRELL
FT                 LSRYASRLSSMRGHPTYAVFFNDSLDGLFAVRPSALLPPGVRLRSLLGQLG
FT                 VTMPATFSTGESTSPPWLSPEVRVNLDLHSLPKDSTPSFVYRREFLALRFK
FT                 FDDNLFIYTDGSKTDQGVGCAFVLGNASFKYRLPEWSSIFTAELYALYQAT
FT                 QYVRRNSLNKSVICSDSLSALLSLRTLYPVHPLVQSIRNCLTSLSASGTTV
FT                 TFLWVPGHVGVLGNESADTAAKEAVLLPRLSTFSTTSDDLRAGVSRRIISR
FT                 WFLHWSSLSGNKLRAIKPVPDLWSTSSRPSRREEIVLARLRIGHCRYSHQY
FT                 LLRGDPAPLCEHCDEPFTVYHLLVQCPFFNRLRHDLCLPFEMSDILADDPH
FT                 SADRVLLFIHRANMAKAI"
XX
SQ   Sequence 5662 BP; 1218 A; 1648 C; 1313 G; 1481 T; 2 other;
     tgagtacgtg cgtggcgagc acggggcccc agcctttgtg gcactctttc ttttccgtgc        60
     tacacgacgc ttctcctact gtccttttcc cctctcttgg ggaccgagtt ttgtgcatcc       120
     ttcggggaac cgaagttaaa actttttggt ttgagctctt ctctcacctc tttatttgcc       180
     tccgcatcag cgtttgaggc ttcacctcct actatttctt ccttcctcct ccctgtacgc       240
     acctgaaggc cacccatatg ggtgactggg taatgcgtaa gtcccagccc cgggctggca       300
     tgtagggtgc gtgcgtaccc cctggttaag gccaggcccg gggaggggcg attgcctgcg       360
     ctgatacctt cccgattcgc cgattggtcc ctccgtctgt agatcgggag gtgcgacctg       420
     gggtgggaac aatcacccaa ggcgggtgtg cttccgttgg gggcccccag caggaaggag       480
     cgtgccatcg gagacactgg caatcgtggg ggatacatcc gcgatggttt tccacagaaa       540
     aaggaaatgt aaagagtctc acgaagttaa agacatactg gacaatagtg tacctgaaca       600
     gatgacttta ccatcgacac ctaagttcct tgtggttacc cgtactgagg aaggacaatc       660
     cttctcgtcg gtaaacccat ttataattca gaaaggggtt gatgccattg ctggcccagt       720
     taaawcctgc acccgcctgc gtaatgggac actactgttg gaaacagaaa gtggctccca       780
     ggcgcagcgg ctgctcaagg ctaatttgct ccatagttac ccggttcgtg ttgagcttca       840
     tccaaccctc aattattccc gaggggtagt ctactcagcc tgtttggacg gtctgactga       900
     ggatgaatta aaggactatc tggcagcgca aggcgtcatc gcagtgcacc gagtgatgaa       960
     aaaggagaac aacgtttcag tccccactcg cacagtgttc ctgaccttcg accgagtggc      1020
     tctgccgccg aagatcaagg caggatatga ggtagtcaca gtacgacctt atatccctaa      1080
     ccctactcgg tgttaccagt gccatcgctt taatcacaca agtcagtcgt gcaagaaccc      1140
     ggtaacatgt gtcacctgtg gtaaagatgc acatgagggg aattgtccac caccgtcccc      1200
     ccattgcatc aattgtaacg ggaatcatgc tgcctcctcc cgggaatgtc ccgtgtttgc      1260
     cgatgaacgg gccatacagg aaatacgagt caaggaaaag gttcctatac aagttgcacg      1320
     taagatgtac gccagtcgta agcctaatac cccaccgcgt ggtaactaca gtactgtagt      1380
     tgcagcgcct ccaccaacgc gggacatggc cacacagacg tgtgacctac agtttactac      1440
     tgtagtcgtc aaacagtcta catcgacaac ggcgtcaagt tcgacgaaaa gtgtgaatac      1500
     ctcttccaaa tcttcatctt cagctgtgaa accacagatc gagacccgta agtctaagaa      1560
     ggagcattcg cgcgaggatt tcctccgcac cccttccaaa acatctgagc ctacaaagga      1620
     acttcaccag ggctccaaga agtcaagtag ggggaaaact tccccccccc cttctacctc      1680
     acaatgcgac gatggcatcc cctggaagcc tatagtctct ccaggtgcat cagccaaaga      1740
     tggggctgcc gaccaccctc acgcggctgc cgtggtcacc tctgagaaca tggagcaaga      1800
     ccctcccgtc tcagacacca ccagttgcga acattcgcat tgtggcccgc cgccttcgtc      1860
     gggctgacgt ccacctccat atcattttat cctactatgg atattcttca atggaacatt      1920
     cgtggtatcc ggtcgaattg gacagaactg cagcttctta cgcgaacata tcacccaatt      1980
     atcttctctc tacaggagac maaattgctc cctggtactc gaattacttt cccacgctac      2040
     actgccgttc gctttgacct tcctccagtg gcaggaattc cagcccacgg gggcgtaatg      2100
     ttgctcattc gggatgacgt acacagtaca cccgtccctt tgtgtactcc actacaagct      2160
     gtcgctgtcc ggataaacct tcctggattt atcttcacac tgtgcaatat ttacgctcct      2220
     tcctcctttc ccgtcactag atctgatctt ctagatctta ttgaccagct tccacgtccg      2280
     tttttgttgg tgggcgattt caatgcccac cacccccttt ggggctcccc acgaccatgt      2340
     ccacggggct ccctcctggc agatatactg aaccaccttc agctcatctg ccttaacact      2400
     ggtgaaccaa cttatctttc ggactccaca aacactttca gccacataga tctatctatc      2460
     tgcactgctc agctggcacg gcgtcttgaa tggtctgttc tctcagacac acattcgagc      2520
     gatcattttc catgtgtaat tcacctaatg acgcctggca cccttgagca tccacaccgc      2580
     tggcagataa ccaaagcgga ctgggagctc tactcgtcac tggcggattt tggtactcat      2640
     caatatccca gtatagacga ccaagtggaa cacattacca cagttattct cacagccgcg      2700
     gaatgttcca tcccctgtaa gactacccaa gcacgtcgtc cccttgtccc gtggtggact      2760
     gcggaatgcc gtgacgctct gcgagcacgg cgacgtgccc tcagaacctt caaacaacgg      2820
     cccacgctcg acaactgcat ccgatacaaa cggctgcggg cctattgtcg tcgcctcttt      2880
     cgcgactgta aacgcgccag ttggcgctca ttcacgagct cttttaatag gtctacccct      2940
     tcctccatca tttggggtaa cctcagaaaa atttcaggca ctatggctca ttccccgatt      3000
     cccggtctct gtgtcgcaac tgacaccatc gtcgaccctc cacaaatagc caacgcactg      3060
     ggtcgacatt ttgcagaggt ctctagttct tcacactaca ctgacgcttt cctcactagg      3120
     aaacggacgg tggaggcgac tccattgccc tttacctctc agaaccgtga atgctacaat      3180
     gccgagttta ctgtgcaaga gctccaccac gcactctcgt cttcgcggtc ctccgctcca      3240
     ggaccagatg gcattcacgt agcgatgttg caacaccttt cacctacggg cttgcacttc      3300
     ctactggcca cctacaaccg catatggata gaaggcacct ttccgcgacg ctggcgtgaa      3360
     gccatagtca ttcccatacc aaagcctggg aaggacaaat ttctcccttc cagctaccgc      3420
     cccatttccc tcaccagtag cgtatgcaag gtgatggaac gcatgattca cgggcgcctg      3480
     gtatggtggc ttgaaacgcg acatctcctt tctaatgtcc aatgtgggtt tcgcaagcac      3540
     cgttctgcgg tggatcatct cgtcgcccta tctacttcag taatgaataa ctttttacgg      3600
     aagcgccaga cagtagcggt gttctttgat ctggaaaagg catacgacac ctgctggagg      3660
     atgggcatcc tccgcactct gcatacatgg ggttttcggg gtcgtctgcc aatttttatc      3720
     cgggaatttt taacagaccg tgtgtttaaa gtgcgtgttg gttcggtttt atcgagcact      3780
     tttattcagg agaacggggt cccccagggc tcagtcctga gcgtcgtttt atttgcagtg      3840
     gcaatcaatt ctatagccga tcatctacca ccgggagtgt cggcgtccct ctttgtcgac      3900
     gacttcgcga tctacagcag ctctgagcaa acgggtctcc tggagcggcg ccttcagcgg      3960
     tgcctagaca ctctccacac gtggagtatg gacactggct ttcgattctc ggctgacaag      4020
     acagtctgca tgaacttctg gcggcggaag gagttccttc ccccgtccct tcgtctgggc      4080
     cccatagtac ttccatttgt ggagaccacg acgttcttgg gacttgtttt cgacaggaag      4140
     ctaagttggt ctccccacat atctcgtttg gcagctcgct gtacccgctc tctcaatgtg      4200
     ctgcgggtgt taagtggcac ctcgtgggga gctgatcggt ctactctcct ccatctgtat      4260
     cgcaccatag ttcggtccaa actggactat ggaagcatcg tctattcttc ggctcgaccg      4320
     tccatactgc gccgccttaa cacaatccac caccaaggga tccgtctggc gacgggagcg      4380
     ttttacacta gccccgttga gagcctctat gccgaggccg ccgaactacc tctttcttac      4440
     cgtcgggaac tcctgcttag ccgttacgct agccgtttgt catccatgcg aggacaccca      4500
     acgtatgctg ttttctttaa tgactcactt gacggtctct ttgccgtgcg cccgtctgct      4560
     ctgctaccac cgggagtacg cttgcgttcg ttacttggcc agctcggcgt tacaatgcct      4620
     gctactttct cgactggaga gagcacctct ccaccgtggc taagccccga agtccgtgtt      4680
     aacttggacc ttcattctct tccaaaggac tccacaccta gtttcgttta ccggagagaa      4740
     tttctcgcac tccggttcaa atttgatgac aatttgttca tctacactga tggctcaaag      4800
     acagaccagg gtgttgggtg tgcctttgtg cttggcaacg cctcgtttaa atatcgtctc      4860
     cctgagtgga gttccatttt tacagctgag ctgtatgcat tatatcaagc cacccaatac      4920
     gtccggcgaa actcgctcaa taagagtgtc atttgctcgg actctctgag tgctcttttg      4980
     agcctccgca cgctatatcc tgtccatccc ctggtacaaa gcatccgcaa ttgccttacc      5040
     tctctttcag cgagcggaac tactgtgacg tttctgtggg tccctggcca cgtgggagtg      5100
     ttggggaatg agtctgcgga tacggctgcc aaggaggcag ttctcctccc tcggctgtct      5160
     accttttcta ctacctctga tgaccttcgt gctggcgtct cccggcgtat catctcccgt      5220
     tggtttttac attggtcatc cctgtcaggg aacaaattgc gagccattaa acctgtgcct      5280
     gatctttggt caacgtcatc tcgaccctct cgccgagagg agattgtcct ggcccggctt      5340
     cgtattggcc actgccgtta tagccaccag tatttacttc gtggtgatcc tgctccctta      5400
     tgtgagcact gtgatgaacc ttttactgtg taccaccttt tagtgcaatg tccgtttttt      5460
     aatcgtctcc gtcatgatct atgtttacca tttgaaatgt ctgatatttt agctgatgat      5520
     ccgcattctg ctgacagagt tttacttttt atacatcgtg caaatatggc gaaagccatt      5580
     taagttctaa ccccggttcg attttactat gggcagtgtt gggcgctaat gacctcagca      5640
     gttgtgcgcc ctaaaacaaa aa                                               5662
//
ID   Nimb-1_RPr  repbase;    DNA;    INV; 2714 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Nimbus-type non-LTR retrotransposon: consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Half;
KW   Nimb-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2714
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3478-3478 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           411..1769
FT                 /product="Nimb-1_RPr_1p"
FT                 /translation="MESNLHPKKKNKLKKLEQTQELAGNKSGQQFFIMTCQ
FT                 EEGKSFEPYWPYKMFDFLKKICPGTKTKKLRNGSLLIEARASEKAKSLLEL
FT                 ETFEDMKIKVELHKTLNYSKGVVTSYDLIHCSEEEILNESRSQGVVEVKRL
FT                 YKRQFGESTPTPALILTFEGSQPPEKITAGFVSLPVRHYIPSPLRCFKCWS
FT                 LGHIAGNCTIGDRCKLCSAPIHQNECVTPALCINCNGCHSSVSVDCIKYKK
FT                 EKRAQEIKVKECISYREALRKVNAETNRPISYAQCVSETPADKKNLEDLVT
FT                 RLTAVVETLVKSVGKIEENYDRIIKILEIEGKEKEEEIKSKEKREEVERKS
FT                 DSDQKKEMEVVMEDSVKPPIASKKRPQTPISPTSKVVYTASPPRKILGGVG
FT                 KKVGQKTETKREIGSNASSNSSLVSGEDKDVDLMDLATLEKYVYNLRKKKG
FT                 REKKLTTK"
XX
SQ   Sequence 2714 BP; 939 A; 463 C; 609 G; 703 T; 0 other;
     gcccctgcag gtccggggac agaataggcc tgctccagtc caggatgtcg taagaggcga        60
     ctaaaggaca acgcagggac ggctggctta cagccgtatg ggcatagcaa acccacggaa       120
     cccaagctca ataccacgcc acataacaca ttcacactca cactcacaca cacacacacc       180
     acacacactc atgcacacac ccctaaatct cggttcccga gccgggaggt ttttgggcgg       240
     gggtatcggc ccatgtatcg gtcccactga gtaccaggcc gatctcagtg agtatgcagg       300
     ccctctctcc ggtaagggcg cactgtcgga gagtgaccta tagaacgtcc caactcgtgg       360
     gaactatatg gaacctactt ttaaaacaaa ttcaacaggc ttagttaaga atggagagca       420
     atcttcatcc aaaaaaaaaa aataaattaa aaaaattaga acaaacgcaa gaattagctg       480
     gcaataaatc aggccagcaa ttttttatta tgacttgtca agaggaagga aaatcttttg       540
     agccatattg gccttataag atgtttgatt ttttaaaaaa gatatgtccg ggaacgaaaa       600
     ccaaaaaatt gagaaatggt tcccttctga ttgaggcgag agctagtgag aaagctaaat       660
     cactgctgga gctagaaacg tttgaagata tgaaaattaa ggttgagtta cataaaacac       720
     tcaactattc taagggagta gtaacaagct atgatctaat ccattgtagt gaagaagaga       780
     tcttaaatga atcaagatca cagggtgttg tcgaagttaa gcgtctttat aaaagacaat       840
     ttggggagag tacgcctact ccagcgctta ttttaacttt cgaaggttca caaccacctg       900
     aaaaaattac tgccggattt gtatcattgc ccgtgaggca ttacattcca agtcctttaa       960
     ggtgcttcaa atgttggtcg ctgggccata tagcgggcaa ctgcaccatc ggtgatcgtt      1020
     gcaagctatg ctctgcgcca attcaccaga atgaatgtgt tactccggca ttatgcataa      1080
     attgcaatgg ctgccactct tcagtgtcag tagattgtat aaagtacaaa aaagaaaaaa      1140
     gagctcaaga aataaaggtt aaggaatgta taagttatag agaagcatta aggaaagtga      1200
     atgccgaaac taatagacct atatcgtacg cgcagtgtgt ctctgaaaca ccagccgata      1260
     agaaaaatct ggaagatcta gttacacgcc ttactgcagt ggtagaaact ctggttaaaa      1320
     gcgtaggcaa aatagaagaa aattatgata gaattattaa gattctagaa atagaaggca      1380
     aagagaaaga agaagagata aaaagtaaag aaaaaagaga agaagttgaa aggaaaagtg      1440
     atagtgatca aaaaaaagag atggaggtag tcatggaaga ttccgtgaaa ccacccatcg      1500
     cttctaaaaa acgaccccaa actccgattt ccccaacctc aaaagttgtc tacactgcct      1560
     caccacccag gaaaatactg ggaggagtgg gcaaaaaagt aggacagaaa acagagacca      1620
     agagagaaat aggaagcaat gcttcctcaa attcttcttt ggtaagtggt gaggataagg      1680
     atgtggatct catggattta gcaaccttag agaaatatgt gtacaacctt cgaaaaaaaa      1740
     aaggaaggga gaaaaagttg actacaaaat aatccatatt ttaatctgaa tgcaccatgt      1800
     acagtgaagc aaaagggaga gtaaacttag gaaataacat taaggaaatt ctaagtgaca      1860
     atgaaaacaa tgtacaaaaa gcgctgcagt ttctacaaga aattaattta atgcatctaa      1920
     tttaatggac actatgctga aaatttatat tagactcgct taaatcgatg atataggtct      1980
     ctcttttgtt taggtctata agtaggatta atttatgtta gatttagact taggctgtaa      2040
     gaatggttgt aggaatgagt gcggggggcc aatgtcggga taggggtggc gaacttcttc      2100
     tctacaggac gcctttcctg tactttaaat gtacaaaatt gggagccact gtcttctgga      2160
     ggggtgggtc tgtgtcgggt ttggcacccc ggcaaggtat gaatggtacg aaagaatgta      2220
     gtgtaaatag tataaatatg ttagtttagg tttagtttct gtttagggtg agaggaatat      2280
     tgagtactcc acccgaattt tagtttagtg cgtatatgtg taatatgatt gtccattttt      2340
     aatgcgtgta tgtatttatt tgcttgggaa tatttattag tatgagcgca tctaagtatg      2400
     taagtattta ttggtatgtt tgtctgtatg aatgcgaaat cgtaagtgta aaccagagta      2460
     aatgtacata ttagttttac ttaggctatg atccgtgagg ggtgcgagga atatcaagta      2520
     ctccacccca agtagatata gaaacaatat aggtgcgatt tatttatatg ttaggtcagt      2580
     tgtcgttagg ttttcttcgt taggtaacta gtagtttaac ataatcagta tagtgtccat      2640
     cagaaataag aaaacaggtg cgaaggacct tagatgttgt gcacctttca aataacaaaa      2700
     aaaaaaaaaa aaaa                                                        2714
//
ID   Nimb-20_LMi repbase;    DNA;    INV; 6001 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6001
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3412-3412 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(412..732,641..1945,1855..2868,2808..3410,
FT                 3155..5611)
FT                 /product="Nimb-20_LMi_1p"
FT                 /translation="MALPGAKPASLSVXGPNLMLRHMTPRRSLPWPRHGRN
FT                 AGREIEVRLMPPXTWYVPGLTANRLPPRSPCFLWKTLRISSGRWMACQDEI
FT                 WXCXHXDVVPSPVTGTACLVRGGGWHVKMRSGXVLITTSSPAQSRALLACD
FT                 KLGDVPVSITPHKSLNMVQGIIFHKDLLLQXDDELRKNLERRGVHFIRRVH
FT                 RGPKDNRVATGAFILAFEGDSLPEKVKVMIYRCDVKPYVPPPMRCFKCWRF
FT                 GHMSSRCXGNPTCRECGRAXHPDAPCAPPPVCVNCGQHHSPCSPXCTVLHK
FT                 ERKIMEYKTLDRLSYSEAKRKYXKLHPVSMKTSMPQLHHTASAISATALHC
FT                 LVFHSGPPGXTAHXCPHGLWGHLNLHRPQGPCFGSTTISTVGXSVPTPEPE
FT                 SQQPXLAPXARKGSLGSLPSKASPADASGWLKXPPTAGRRASRASSVPGDG
FT                 SAEPSQHEKPKEXREKKKKKNKSKTKDSLVATVPPXHSTSSSEDEIEILAS
FT                 PKDLAIAESSEAMDVEALPQKSATAEDTVXPTAPSKSACPSDQEALGSASK
FT                 IGDSRRYCXPYCAVEISMSQRPGGSLILQWNCGGFFRHLPELQQLLCRFPA
FT                 FCVALQETWFPAQRTPALRGYRGYYKNRTIYDRVSGGVCIYVLATVPSAAV
FT                 PLHTTLEAVAVRIRAMQELTICSLYLPPDEMVSLTDLAALVAQLPPPFLLL
FT                 GDFNAHHPLWGGAQTTGRGRDIETLLSQQDICLLNTGAPTHFCVARGTYSA
FT                 IDLSVCTPSLLPHLSWGGSTMTFAGVTISPFFCHSSTWTSGSHPMVSIAAD
FT                 WRGYTSAAVVSVPLPPDIDTAVQQVTAAIVSAAEETVPITTGSPRRKVVPW
FT                 WTPEIAEAIRDRRRRCNATGAAPQSKIGHPGPSAALQRHRRRPTIENLIAF
FT                 KRLRARARRLIRQSKQDCWERYVASIGSRASPSRVWSQVRRLFGYRPPAGI
FT                 PSLTVDGTLCTDPAVIAECMAEHYASCSATANYSASFRSLKQRVERNPLSF
FT                 HTRRRELYNARLRSGSLTLLSLHAPIPLRDQTAYTASSSVTCQRTFITNCS
FT                 PYLIGSGQGVFSHPSGGIVLLSLSTTGGAKSSIFPHSPPGTVQCSFTEWEF
FT                 NTALAACPDTSPGPDRIHGQFVRHLSADFHHKLLALFNRVWTGGVFPSQWR
FT                 DSIIIPVMKPGADPLAVDSYRPISLTNVLCKLLERMVSRRLMWILEDRSLL
FT                 APQQGGFRQGRSTIDNLVSLESAIRTAFSRCEHLVAVFFDLRRAYDTTWRH
FT                 HILATLYDWGLRGPLPIFIKNFLSLRTFRVRVGTSLSSXRVLENGVPQGSV
FT                 LSVPLFLIAINGLAAAVGSSVCCSLFADDFCLYYSSPSIGVAERRLQGAIR
FT                 RAQSWATAHGFTFSASKTRVMHFCRRRAVHPDPELYLAADQLHVAETHRFL
FT                 GVLFDNRLTWGPHLRQLKQKCWRHLNILRCLSHTAWGADRRTLMHLFKALI
FT                 QSRLDYGSQVYDSASPSALRILDPILHGGVRLATGAFRTSPVPSLLAEAGI
FT                 PPLRYRRQQLLASYIAHVHATPHHPNRRLLFPNTDLPSPQRRPRSGLPVAV
FT                 RVHSLLSSLESFPLRPAFSCLSHIPPWTIPRLQLHLQLSCDPKASVSPQLL
FT                 RHQFLDILGTFRDADVIYTDGSQVDGRVGYAYVHGDHTEQRSLPPGCTVFT
FT                 AELIAITRALDHLRACPRKSYLICSDSLSALHALDQCFPKHHLVRSIQVTV
FT                 FSLGKSGRSVAFIWTPGHIGIPGNERADQLAKQAIACQRLDIGTPEGDIRL
FT                 GLHRKIFEAWNSEWATMSTPNKLRAIKPSTAAWKTSLRPSRRDSVVLCRLR
FT                 IGHTWLTHGHLLRREEPPECRCGALLTVVHILLDCPLLAALRQSFNLPTAL
FT                 PSILADDASMADCVLGFIRAAGFYHKI"
XX
SQ   Sequence 6001 BP; 1198 A; 1766 C; 1516 G; 1476 T; 45 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa acctcaatct caaggtgtgc       240
     tacgtgccga ggagatgcat ggctgttgag gttgaacagt cgctagcgag caacctctga       300
     ggaacctgcc gcacctcagt tgtataaggc ttacccaggc aagcggggct ctgcctgggt       360
     ggacctttag ttccctagct gctcgtggga cgagaatgaa acgagcaaat aatggcgttg       420
     ccgggcgcaa aaccggcgtc tctaagcgtg gkmgggccga atttaatgct gagacatatg       480
     acccccaggc gttcccttcc ttggccacgc catgggagga acgcagggcg agaaatcgag       540
     gtgaggctta tgccccccgw tacttggtat gttccmggac tgacggcgaa tcgtttacca       600
     ccacgaagcc cctgtttttt gtggaaaacc ttgaggataa gttcggggag gtggatggca       660
     tgtcaagatg agatctgggk ctgtmctcat wacgacgtcg tccccagccc agtcacgggc       720
     actgcttgcc tgtgacaagc tgggtgacgt ccccgtwagc atcactcccc ataagagcct       780
     caacatggta cagggwatta tattccataa ggaccttctg ttgcagwctg acgacgagtt       840
     acggaagaac ctggagmggm gaggagttca cttcatmcgg cgwgttcata ggggtccgaa       900
     ggacaatagg gtcgccaccg gtgcattcat cttggccttc gagggcgatt ccttgcckga       960
     gaaggtcaag gtgatgatat accggtgtga cgtaaagccc tacgttcctc cccctatgcg      1020
     ctgcttcaag tgctggaggt ttgggcacat gtcctccagg tgtgmtggca accccacmtg      1080
     tcgggagtgt ggacgtgcck cacacccgga cgccccttgt gcmcctcctc cagtatgtgt      1140
     gaactgcggg cagcaccact ccccttgctc gcccgmctgc ackgttcttc ataaagaaag      1200
     aaagatcatg gaatataaga ccctggaccg gctgtcwtac tcggaggcma agaggaagta      1260
     tgmcaaactc catcccgtsa gcatgaagac atctatgcca cagctgcatc acactgcctc      1320
     tgccatctct gctaccgccc tccactgcct cgtcttccac agtgggcccc cmggccmaac      1380
     cgcccacmtc tgcccccatg gcctttgggg gcacctcaac ctccatcgcc cccaaggwcc      1440
     ctgctttggg agcaccacca tctccaccgt ggggmcmtcg gtccccaccc ctgagccaga      1500
     gtcacaacag ccwkctctgg ctcctckcgc gaggaagggs tcccttggat cccttccctc      1560
     taaggcttct cccgcggatg ccagtgggtg gctgaaggwg ccgccwactg ctggtcgcag      1620
     ggcctcacgg gcctcctcag ttcctgggga tgggtccgca gagccctccc agcatgagaa      1680
     gcctaaagag makcgcgaga agaaaaagaa aaagaacaag agtaaaacca aggattccct      1740
     ggtggccacc gtgccaccaa mccactccac ctcttcatct gaggacgaga tagagatcct      1800
     cgcgtccccc aaagacttgg ccattgccga gtcttcggaa gccatggacg ttgaggctct      1860
     gcctcaaaaa tcggcgacag cagaagatac tgtgamccct actgcgccgt cgaaatcagc      1920
     atgtcccagc gaccaggagg ctctctgatc ctccagtgga actgtggcgg ctttttccgc      1980
     catctgccag agttgcagca attgttgtgc cgcttcccag cgttttgtgt agccctgcag      2040
     gaaacctggt ttcctgctca aaggacccca gcccttcgtg gctatcgggg ctattacaaa      2100
     aatcgtacca tatatgacag ggtctctgga ggtgtatgta tctatgtcct tgccactgtc      2160
     cccagtgccg ctgtgcctct ccacacgact cttgaggcgg tggctgttcg aatccgggct      2220
     atgcaggaac tgacgatctg ttctctttac cttcctccag atgagatggt ttcgcttact      2280
     gaccttgctg ccctggtggc acaacttccc ccaccatttc tgcttctggg ggacttcaat      2340
     gcccaccatc ccttgtgggg tggagcgcag acaacaggcc gcggtaggga catagagacg      2400
     cttttatcac agcaagacat ctgcctgtta aacactggtg cacccacgca tttttgcgtg      2460
     gcgcgaggca cgtattcagc gatagatctc tctgtttgta ccccgagcct gctcccacat      2520
     ttaagttggg gagggtccac gatgaccttt gcgggagtga ccatttcccc attcttctgt      2580
     cactccagca cttggacctc aggctcccat ccgatggtgt ctatcgcagc agactggcgg      2640
     ggttacacct cggctgctgt ggtttctgtt ccactaccgc ctgatattga tacggcagtc      2700
     caacaggtca ctgctgctat agtctcagct gcagaggaga ccgttccgat caccactggc      2760
     tcccctcggc gcaaggtcgt gccctggtgg acgcctgaga ttgctgaggc catccgggac      2820
     cgtcggcggc gttgcaacgc caccggcgcc gccccacaat cgaaaatctg atagccttta      2880
     aaaggctcag ggcccgagcc cgacgactca tccggcaaag taaacaggac tgctgggagc      2940
     ggtacgttgc ctccataggc tctcgtgcct ccccttctcg cgtctggtct caggtacggc      3000
     gcctcttcgg ataccgccca ccagcgggaa tcccgtctct gaccgtcgat ggcactctct      3060
     gtactgaccc ggccgttatt gctgagtgca tggcagagca ttatgcgagt tgctccgcaa      3120
     cggcaaatta tagtgcatcc ttccgctccc ttaaacaacg ggtggagcga aatcctctat      3180
     ctttccacac tcgccgccgg gaactgtaca atgctcgttt acggagtggg agtttaacac      3240
     tgctctcgct gcatgccccg atacctctcc gggaccagac cgcatacacg gccagttcgt      3300
     ccgtcacctg tcagcggact ttcatcacaa attgctcgcc ttatttaata gggtctggac      3360
     agggggtgtt ttcccatccc agtggaggga tagtattatt atccctgtca tgaaaccggg      3420
     agcagatccg ctggcagttg acagttaccg ccccatcagc ttaactaatg tcctgtgtaa      3480
     gttgcttgag cgtatggtga gtcgccgtct tatgtggatc cttgaagatc ggagtctgct      3540
     ggccccacaa caggggggtt tccgccaggg tcgctccact atcgacaatt tagtgtcatt      3600
     ggagtcggcc atccgtacag ccttctctag gtgtgagcac ctagttgcgg tcttttttga      3660
     cctccggagg gcgtatgaca cgacatggcg ccaccatatt cttgctacac tgtatgactg      3720
     gggcttacgg ggtccactcc caatttttat caagaatttc ctctcgctac gcacttttag      3780
     ggttagagtt ggtacctccc tcagctcacs ccgagtgctg gagaacggcg tcccacaggg      3840
     ctccgttctt agtgtaccgc tctttttaat tgcgataaac ggtcttgctg cggcagtggg      3900
     gtcatcggtt tgttgttctt tattcgccga tgacttttgc ttatactaca gctctcctag      3960
     cattggtgtt gctgaaaggc gtcttcaggg agccatccga agggcacagt catgggccac      4020
     agcacatggc tttacgttct cagcttctaa aacccgggtg atgcactttt gtcgtcgtcg      4080
     ggccgttcac cctgacccag aactstacct agctgctgac cagcttcatg tcgcagaaac      4140
     acatcggttt ctcggcgtgc tgtttgacaa ccgactgact tgggggccac accttcgtca      4200
     gctgaagcag aagtgctggc ggcacctaaa tatattgcga tgtctcagcc acactgcctg      4260
     gggagctgac cgtcgaaccc tcatgcacct ctttaaggcg ctcatccaat cacgcctgga      4320
     ttatgggagc caggtgtatg actctgcatc accttcagca ctgcggatct tggatcccat      4380
     tcttcatggt ggtgtccgtt tagcaacggg ggcattccgc accagccctg tgcctagcct      4440
     ccttgccgaa gctggcatcc ctcccttgag gtaccgccgg caacagttgc tggcctccta      4500
     cattgcccat gtccacgcta cgcctcacca tccaaatcgc aggttattgt ttccaaatac      4560
     cgaccttccc tctccacaac gtcgacccag atcgggtctt ccagtcgcgg tccgggtaca      4620
     ttctcttctt tcttcactcg agtcctttcc tctccgtcct gcattctctt gcctatctca      4680
     tatccctcct tggaccatcc cccgcctcca gctccacctg caactgtcct gcgacccaaa      4740
     ggcgtcggtt tcaccacaat tacttagaca ccagtttctg gacatacttg gcacattccg      4800
     tgatgcagac gtcatataca ctgatggctc ccaggtagac ggcagagtgg gttacgccta      4860
     tgttcatggc gaccacactg aacagcgctc cctgccccct ggctgtactg tctttacggc      4920
     ggagctgatc gcaataaccc gtgctctmga ccatctcaga gcatgcccca ggaagtcata      4980
     tctcatctgc agtgactccc tgagtgcctt gcacgctctc gaccagtgtt tccccaaaca      5040
     ccatttggtg cgatccatcc aagtcacggt gttcagtctt ggcaagtcag gccgttctgt      5100
     ggctttcatc tggaccccag gccacattgg cattccaggg aatgaacgcg ctgatcagct      5160
     ggccaagcag gccatcgcct gccagcgcct ggatatcggt accccagaag gggatatccg      5220
     cttgggtctg caccgaaaga tctttgaggc ctggaattcg gaatgggcaa caatgagtac      5280
     gcccaataag ctccgtgcaa tcaagccttc gacagcagct tggaagactt ccctaaggcc      5340
     ttctcgaagg gactcagtcg tcctctgtcg cctgcgtata ggccatacgt ggctaacgca      5400
     cggccacctc ttacgtcgag aggaaccgcc agaatgccgt tgtggcgctc tgttgactgt      5460
     agtccacatc ttgttggact gtccactttt agctgcattg cggcagtctt ttaacctgcc      5520
     tactgcgctt ccttcgattt tagctgacga cgcctctatg gctgactgtg ttttaggttt      5580
     tattcgcgca gctggttttt atcataagat ttaatggtgg gttcgtatgc ctgatcttca      5640
     ggcatacacc gcttatagtt ttaatctgtt gtcacttttg tcttgtcagt cctatttccg      5700
     actggcagtt ttagtatgtg cagaatggct ggctcatcca ttattatcct agtgatcagc      5760
     cagccaacaa catctgctgt gattttwagc atagttgatt atttgttcca cctctattgt      5820
     ggtttccttt ttctttttat gttgtaattt tcgcccacac tgtcttcctg tacatcttgt      5880
     gtactggttg cggggtgctt atttttaacc gtaaatgaaa tactgtgatc tcttagctgg      5940
     gaacagggga ctgatgaccc agtagtttag tcccctttaa acacccaaca ccaaccaacc      6000
     a                                                                      6001
//
ID   Nimb-21_LMi repbase;    DNA;    INV; 6110 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6110
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3413-3413 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(390..572,535..2175,2305..4257)
FT                 /product="Nimb-21_LMi_1p"
FT                 /translation="MYPLGCSPLTTQGSLYRCQSCILLMQAKESMLVSVGH
FT                 QDSRQRSSRQVTLLWLGGAHEESPRCCGWVAPMRRAPDRSGWHRGGSPAMK
FT                 RQKSGDVGGRTTAVSKKGKFNASMYDPQTFPSLTAPWEGRRAAKQSEXYAP
FT                 RYLVCSRTDGDSFSATKPQFFVDHLEDRFGEVDSLSKMRNGSVLIHTASPA
FT                 QSRALLACDKLGDVAVTITPHKSLNMVQGVIFHRDLLLQTDDELRANLERR
FT                 GVHFIRRVHRGPKDNRVATGAFILAFEGDTLPEKVKVMVYRCDVRPYIPPP
FT                 MRCFQCWKFGHMSSRCTSSATCRDCGRPAHPGAPCTPPPICVNCGQNHPPC
FT                 SSQCPALQRERKITEYKTLDRISYNEAKKKFDRLHPVTMNNSFAAVTSSPL
FT                 XLAAAVFPTSSVSVGPQGRQPKPAPTVVGGHPSTAPKAKASGSATTSPPEK
FT                 DQPSPASLTRKGSLGTLPSASVDIDTNQQQARSQTAGRRASRSSSVPVAES
FT                 EKHLPPAKPPRERRGKPRPKKGTTQETTVASVPPLPSASTSTSEDEVEILA
FT                 SPEDLALGDALDKTDTQLTNLHRWMQVMLSYSPPTRLIHVFPALNQCHPPV
FT                 ELRRFLPPPGQGLRWSVCVCPHVLTSVYSEPVPLRTPLEAVAVRVRTTQEF
FT                 TVCSIYLPPDGDVSVNVLAALVAQLPPPFLLLGDFNAHSPLWGGSTISGHG
FT                 RVVEDLLTQLDLCLLNTGAPTHFSVAHGTFSAIDLSICSHSLPPSVHWRAH
FT                 DDLCGSDHFPVFLSLPQRESPARPPRWVLHKANWEDYASAAIVGPPPLENI
FT                 DVVVESATHSIISAANATVPRTSGCPRRKTVPWWSPEVAEAIKDRRRALQR
FT                 YKRHPSQEHLINFKRLRARARQLIRRRKQECWERYVSTIGTGTSASQVWSK
FT                 IRRLQGLQTPAGIPGISTNGVICTDPATLAEMFAEHYARAFASANYPPAFR
FT                 TVKERVERQSLSFTTRRSESYNTPFTEWELLSALQQCPDTAPGPDSIHSQM
FT                 LKHLSADSRRNLLAVYNRIWCDGVFPSQWRESIIIPVLKPDKHPLSLDSYR
FT                 PINLTNVPCKLLERMVSRRLCWILETRGLLAPCQGGFRQGRSTTDNLVYLE
FT                 SAIRTAFSRRHHLVAVFFDMHKAYDTTWRRHILNTLHDWGLRGSLPIFIQN
FT                 FLAVRTFRVQIGASLSTSHIQENGVPQGSVLSVPLFLVAINGLATAVGSSV
FT                 SPSLYADDFCISFSSCSTQVAERRLQGAIRKAQPGRLLMAFSFLPPRPE"
FT   CDS           join(2331..2357,2305..4257,4182..4835,4717..5031,
FT                 4956..5807)
FT                 /product="Nimb-21_LMi_2p"
FT                 /translation="MSSCPHLCVQGLRWSVCVCPHVLTSVYSEPVPLRTPL
FT                 EAVAVRVRTTQEFTVCSIYLPPDGDVSVNVLAALVAQLPPPFLLLGDFNAH
FT                 SPLWGGSTISGHGRVVEDLLTQLDLCLLNTGAPTHFSVAHGTFSAIDLSIC
FT                 SHSLPPSVHWRAHDDLCGSDHFPVFLSLPQRESPARPPRWVLHKANWEDYA
FT                 SAAIVGPPPLENIDVVVESATHSIISAANATVPRTSGCPRRKTVPWWSPEV
FT                 AEAIKDRRRALQRYKRHPSQEHLINFKRLRARARQLIRRRKQECWERYVST
FT                 IGTGTSASQVWSKIRRLQGLQTPAGIPGISTNGVICTDPATLAEMFAEHYA
FT                 RAFASANYPPAFRTVKERVERQSLSFTTRRSESYNTPFTEWELLSALQQCP
FT                 DTAPGPDSIHSQMLKHLSADSRRNLLAVYNRIWCDGVFPSQWRESIIIPVL
FT                 KPDKHPLSLDSYRPINLTNVPCKLLERMVSRRLCWILETRGLLAPCQGGFR
FT                 QGRSTTDNLVYLESAIRTAFSRRHHLVAVFFDMHKAYDTTWRRHILNTLHD
FT                 WGLRGSLPIFIQNFLAVRTFRVQIGASLSTSHIQENGVPQGSVLSVPLFLV
FT                 AINGLATAVGSSVSPSLYADDFCISFSSCSTQVAERRLQGAIRKAQPGRLL
FT                 MAFSFLPPRPEVAGCYSEGAAWALTHGFQFSATKTRVMHFCRRRTVHPHPE
FT                 LYLNDELLTVVDTHRFLGLVFDARLTWLPHIRQLKRECWRRLNLLRHLGHT
FT                 TWGADRSTLLRLYTALVQSRLDFGCIAYGSAAPSALHLLDPIHNCGVRIAT
FT                 GAFRTSPVASLLAEAGVPPYGSAANNCWQRMQSEYIAQQDTRTTACFFHCG
FT                 RSSPAAATQVRTHNSRPRAVPPGGALNRTPELPPAFSTVAVRHQQQRPRSG
FT                 HTIAVRVQSLLGELESYPLPPPFRARSRTPPWCLPRPCLRLDLAHGRKDSL
FT                 PPEALRRQFLLSLLSTPATTLFIRMARWGPPSPVFAVVAEHPGYDIVYTDG
FT                 SLVNGRIGFAYVHGDHVEQQSLPEGCSVYTAELVAILRALEHMRSCSGESF
FT                 LLCSDSLSSLRALDQCYPRSPLVMAIRETVFALGRSGRSVVFLWSPGHVGI
FT                 PGNERADGLAKQAVNAPTLEIGLPAPDLRSLLRRRVHQLWDAEWRSLSTPN
FT                 KLRVVKETTAAWRSSMRGSRRDSVVLCRLRIGHTWLTHGHLLRGEDPPQCR
FT                 CGSHLTVVHILLDCPVLAALRRNFNLPAVLSEVLGDDATMADSVLRFIRAG
FT                 GFYHSL"
XX
SQ   Sequence 6110 BP; 1199 A; 1799 C; 1573 G; 1533 T; 6 other;
     ccccctgcgg gttcgggggt aagaataggc ccgcggtatt cctgcctgtc gtaagaggcg        60
     actaaaagga gtcctcatac gtttcggcca tatatctttg gtcccctatg tgggtttgac       120
     cttccatttt tcaaaatttt cctgaagagc gaaccatttg gggaaggaca ccttacgtgg       180
     tgcaacgagt attccttgtg caattccatc ttatgcaccc atcatggaac ggcctcatgg       240
     ctgcggcttt tatgcagcca tcgggcaggt catttcatct cagcgcaagc cgtgtccatt       300
     gtgcactgac accccwgcac cccagtcatg atggttcaca ctgcgccaga aagccagcac       360
     ggtagccagc ccgttgtggt ggggtcgtca tgtaccctct tggctgtagc cccctgacaa       420
     cacagggatc gctctaccga tgccagagct gcatactcct catgcaagcc aaggagtcga       480
     tgcttgtctc tgtggggcat caggactccc ggcaacggtc atcccgccag gtgacgttgc       540
     tgtggctggg tggcgcccat gaggagagcc cctgatcgga gtgggtggca tcggggcgga       600
     tcacccgcaa tgaagagaca aaaatcgggt gacgttggcg gacgtacaac cgccgtctca       660
     aagaagggaa agtttaatgc ctctatgtac gacccccaaa cgttcccctc cctgaccgca       720
     ccttgggagg gacgtcgggc cgcaaaacag agtgaagawt atgctcctag atatctcgtk       780
     tgcagcagga ctgatgggga ctcattttca gcgaccaagc ctcagttctt tgtggaccat       840
     ctggaggaca ggtttgggga agtggactca ctatctaaaa tgcgcaacgg ttctgttctc       900
     atccacacag catcccctgc ccagtcacgg gcgctactcg cttgtgacaa gctgggtgac       960
     gttgcggtga ccatcactcc ccacaagtcc ctgaatatgg ttcagggtgt aattttccat      1020
     agggatttgt tgctccagac ggacgacgag ctacgggcaa accttgaacg acgaggagtt      1080
     cattttatcc ggcgcgtcca taggggccca aaggataata gggtcgcaac tggtgccttc      1140
     atcttggcct ttgagggtga tacattgccc gaaaaggtca aggtgatggt ctaccgttgt      1200
     gacgtgcggc cttatattcc tccccctatg aggtgctttc aatgctggaa gttcggccac      1260
     atgtcttccc gttgcacgtc cagtgctaca tgtagggact gcgggcgtcc agcacatccg      1320
     ggcgccccat gtacaccgcc tcccatctgc gtcaactgtg gtcagaacca tcctccctgc      1380
     tcgtcgcaat gtcccgcact tcaacgggaa cggaaaatta cagagtataa aaccctggac      1440
     cgtatatcgt ataatgaggc gaagaaaaaa tttgaccgtc tgcaccctgt tactatgaac      1500
     aactcgttcg cagcagtaac gtcgtcgcca ctctmcttgg cggcggcagt atttcctact      1560
     tcatctgttt ctgtgggccc ccagggccgc caacctaagc ctgcccccac ggtggttggg      1620
     ggccatcctt ctacagctcc caaggcgaaa gcctcggggt cagctaccac ctctccgccg      1680
     gagaaagatc aaccttctcc ggcttccctc acacggaagg ggtcccttgg gacactccct      1740
     tccgccagtg tcgatatcga cactaaccag cagcaggcgc gctcgcagac tgctggtcgc      1800
     agggcttcgc gctcctcctc agtccctgtg gctgagtctg agaagcacct accaccggcg      1860
     aagcccccga gggaacggag gggtaaacca aggccaaaga agggcacaac acaggagacc      1920
     acggtggctt ccgtgccacc actcccctcc gcctccacct ctacttctga ggatgaggtg      1980
     gagattcttg cgtcacccga ggacctcgct ctcggggacg cccttgacaa aacggacact      2040
     cagctgacaa acctccaccg gtggatgcaa gtgatgctga gttatagccc accgactcgt      2100
     ctsattcatg tcttcccagc actcaaccaa tgtcatcctc cagtggaact gcggcggttt      2160
     cttcccccac ctggctgagc tacggcagct tctgagcacg acacctgctt tctgcattgc      2220
     tctccaggaa acctggtttc cagcaatgcg gacccctgcc cttcgtggct acaggggatt      2280
     ttactgcaat cgtagcatat ataacagggt ctcaggtgga gtgtgtgtgt atgtcctcat      2340
     gtcctcacct ctgtgtatag tgaacccgtg ccccttcgaa caccattaga agcagtggct      2400
     gtcagggtga ggaccacaca ggagtttacc gtctgcagta tctacttgcc gccagatggt      2460
     gacgtatctg tgaacgtttt ggctgcactc gtagctcaac tacccccacc tttcttactg      2520
     ttgggcgact ttaatgccca cagtcccttg tggggtggtt ctacgatctc tggtcatggc      2580
     agggttgtcg aggatttact aactcaactc gacctctgcc tcttaaatac aggtgccccc      2640
     acacatttta gtgtggcaca tggcacattt tcggccattg atctgtccat ctgcagccac      2700
     agccttccac catctgttca ctggagagcc catgacgact tgtgtggcag tgaccatttc      2760
     cccgtttttt tgtcactccc acaacgcgag tccccagcac gcccacccag gtgggttctg      2820
     cacaaggcta actgggaaga ctatgcttct gctgccatcg ttggccctcc cccactcgag      2880
     aacatcgatg tggtggtcga gagcgccaca cattctatta tttctgctgc gaacgctacc      2940
     gttccgcgta catcagggtg cccacggcgt aagacagtgc cgtggtggtc gccggaggtc      3000
     gctgaggcca ttaaagaccg caggcgggcc ttacagcgat acaaacggca cccctctcag      3060
     gagcacctca tcaattttaa acggcttcgc gctcgtgctc gccagctaat aagaagacgg      3120
     aaacaggagt gctgggagag gtacgtttcc actattggga caggtacctc agcctcgcag      3180
     gtctggagta aaatcaggcg gctacaggga ttacagacgc cagcgggaat ccctgggatc      3240
     tccacaaatg gagtcatatg tacggacccg gccacacttg cagagatgtt tgccgagcat      3300
     tatgctcgtg cctttgcctc tgcaaattat ccaccggcct tccgtacagt gaaggagagg      3360
     gtagaacgcc agtctctctc ctttactacc cgccgctctg aatcttacaa cactcctttt      3420
     actgagtggg agctcctcag tgctcttcaa caatgtcctg acacggcgcc tgggcctgat      3480
     agcatccata gccaaatgct gaaacatctc tcagcagata gtcggcgtaa tctacttgcg      3540
     gtctataacc gcatttggtg tgatggtgtt ttcccgtcac agtggcggga gagtatcatc      3600
     atcccagtgc ttaaacccga caaacatcct ctttccttgg atagctatcg gcccattaac      3660
     ctgactaacg ttccatgcaa actgttggag cggatggtca gtcggcggtt gtgttggatt      3720
     cttgagactc ggggattatt ggctccatgc cagggcggtt ttcgccaggg tcgatctacc      3780
     accgacaatc tggtgtacct cgagtctgca atccgcacag ccttttcccg gcgccaccac      3840
     cttgttgccg tcttcttcga tatgcacaaa gcatatgata caacctggcg acgacacatc      3900
     ctcaacactt tacatgactg gggcctccgg ggctccctac cgatttttat ccagaatttt      3960
     ttagctgtcc gtacctttcg tgttcaaatt ggtgcctccc tgagcacctc tcatatccag      4020
     gaaaatgggg ttcctcaggg ctcggtttta agcgttccat tatttttagt tgccatcaac      4080
     ggtctggcga cagcggttgg atcgtcggtc tccccttctc tgtacgctga cgacttttgt      4140
     atctctttta gttcctgcag cacccaagtt gccgagcgta ggttgcaggg tgctattcgg      4200
     aaggcgcagc ctgggcgctt actcatggct ttcagttttc tgccaccaag accagagtga      4260
     tgcacttctg tcggcgtcgg acagttcacc ctcaccctga actttatctt aacgacgaac      4320
     tactgaccgt agtggacacc catcggtttt taggactggt ctttgacgcc cggctgacgt      4380
     ggctccccca cattcgtcag ctgaaacggg agtgctggcg ccgtctcaac cttctccgac      4440
     acctgggtca tacgacctgg ggtgctgacc gctcgacgct gttgcggctt tacacggcac      4500
     tggtgcagtc ccgtctcgat tttgggtgca ttgcctatgg gtctgcggca ccttcggcac      4560
     tgcatctcct ggaccccatt cacaactgtg gggtccgcat cgcgacgggt gccttccgca      4620
     ccagccctgt ggccagtcta ctagcggagg ccggggtccc cccttatggg tccgccgcca      4680
     acaactgttg gcagcgtatg cagtccgagt atatagctca acaggacacc cgaactaccg      4740
     cctgcttttt ccactgtggc cgttcgtcac cagcagcagc gacccaggtc aggacacaca      4800
     atagccgtcc gcgtgcagtc cctcctgggg gagcttgagt cctatcctct cccacctcca      4860
     tttcgggccc gttcgcgcac acctccatgg tgcctgccac ggccatgtct tcgtttagac      4920
     ttggcccatg ggcgcaagga ctcgcttccc cctgaggccc tccgtcgcca gtttttgctg      4980
     tcgttgctga gcaccccggc tacgacattg tttatacgga tggctcgttg gtaaatggcc      5040
     gcattggctt tgcctacgtc cacggcgacc acgttgagca gcagtctctg ccagagggct      5100
     gcagtgttta tactgcagaa ctggtggcca ttctccgtgc tctcgagcat atgcgttcct      5160
     gctcaggtga gtctttcctt ctttgtagtg actccctgag cagcttacgc gccctggacc      5220
     agtgctaccc acgttcgcca ttggtgatgg ccatccgaga gactgttttt gcccttggtc      5280
     ggtctggtag gtctgtggtg ttcctttggt ctccgggaca cgtcggcatc ccaggcaacg      5340
     aacgtgccga cgggcttgcc aaacaggcgg ttaatgcccc taccttagag atcggcctcc      5400
     cggctccaga tctccgttcc ttgttgcgcc gccgggtaca tcagctttgg gatgctgagt      5460
     ggcgtagcct gagcacgccc aacaagctcc gggttgtcaa ggagactacg gctgcgtggc      5520
     gctcctcaat gcgtggctct cgccgggact cggtggtttt gtgtcgcctc cgcattgggc      5580
     acacgtggct cacccatgga catctccttc ggggtgagga cccgccccaa tgtcggtgtg      5640
     gctcccatct gacagtcgtc cacatattgt tggactgccc cgttttagcc gccttgcgga      5700
     gaaattttaa cctccctgct gttttatcag aagttttagg tgacgatgct acaatggcag      5760
     attccgtttt acgttttatt cgagcagggg gtttttatca ttctctctaa ctggagattt      5820
     ctttgtgttg ccgagtggtt gacttttcct tttttattct tatggtcggt caaccacaga      5880
     catcggcttc tttgttgtaa ggtgtctttg tgtgatcgtc tcttttcgtt ttgtatcttg      5940
     tcgtttttga tgatgtttta tggactcagt gggactcctc tcccacttta cacttaactc      6000
     tgggcstatc tctttcacgc ccacggtatt cttttgacgc tttagtggtg gaatggggga      6060
     ctgatgacca ttgcagtttg gtccccctta aacatccaac caaccaacaa                 6110
//
ID   Nimb-22_LMi repbase;    DNA;    INV; 5968 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5968
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3414-3414 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(624..1265,1252..1890,1894..3384,3177..4376,
FT                 4426..5163)
FT                 /product="Nimb-22_LMi_1p"
FT                 /translation="GQVWRSGIFFENASGAVLIQTASPAQSRALLACDKLG
FT                 DVPVSITPHKSLNMVQGLIYHRDLLSQTDEELRANLERRGVHFVRRVYRGP
FT                 KDQRVATGAFILAFEGDTLPEKVKVMIYRCDVKPYVPPPMRCFRCWKFGHM
FT                 SSRCTSSPNCRECGRPSHPDAPCTPPPVCVNCGQHHPPCSPNCGVLHRERK
FT                 IMEIKTLDRLTIQRHVKSMSGSIRAAPSGKDDNIFCRSHSGTSFTAINGQC
FT                 SLLCGPYGPTTSTAPSMGGGTSSSVAPTTPPVGAITPSPSGTSVPAPSRRR
FT                 NSLLRLLSLGRGPWDTPFRGFSQCTGDPSQRLKGPRPAGRRASRSSSNPDA
FT                 TTEKPSQASKPKGQREGRQKKSKKKETLVATKPQAPSSSASEDEVEILASP
FT                 EDLAIPGSPESRIADTGDSEQLAADVMDEPVLLYGFSARRPVLLQWNCGGF
FT                 FNRLAELQQLLCRFPVLCLALQETWFPAQRTPALRGYRGYYKNRAAYDRAS
FT                 GGVCIYVLATVPSAAVPLHTTLEAVAVRIRAMQEFTICSIYLPPDEAVSIA
FT                 DIAALIAQLPPPFLLLGDFNAHHPLWGGTQTTGRGRDVEALLSQRDVCLLN
FT                 TGAPTHFCVARGTYSAIDLSVCSPSLLPHFRWKVHDDLCGSDHFPILVSLL
FT                 HFQPAGHQPRWSLRRADWQRYASAAVVPVPLPADVDMAVHQVTSSIVSAAE
FT                 ATVPTTSGSPRRKSVPWWTPEIAEAIRDRRRALQRHRRHPTMENLIAFKRL
FT                 RARARQLIRQSKRDCWEQYVANIGSRASSSQVWSQVRRLFGHRPPAAIPSI
FT                 NIQGTVCTDPTAIAEHMADHYACNSATAAYSAAFRALKVRVERRHLSFHTR
FT                 RDETYNAPFSQWEFQTALAACPDTSPGPDRIHSQFLRHLSAESQHQLLALF
FT                 NHLWAEGAFPSQWRESIVIPRNVQCAIQSVGIPNCPCCMPRYLPGTRPDPQ
FT                 PVPSPPFSRVPTPASRPVQPSMGRGGFPITMAGKHRYPVMKPGADPQVADS
FT                 YRPISLTNVLCKLLERMVSRRLMWILEHRGLLSPRQGAFRQGRSTVDNLVA
FT                 LESAIRTAFSRREHLVAVFFDLRKAYDTTWRHHILATLHGWGLRGPLPLFI
FT                 QNFLSLRSFRVRVGTSLSSPRIQENGVPQGSVLSVPLFLIAIDGLAAAVGS
FT                 SVSSSLYADDFCLYFSSTGMGVAERRLQGAITKAQSWAMTHGFQFSASKTR
FT                 VMHFCRRRAVHPDPELYLGXDLLRVEQTHRFLGMQFDARLTWVPHLQQLRK
FT                 KCWRHLNVLRCLSHTAWGAARTSLLQLYKALIQSRLDYGSLVYDSAAPSAL
FT                 RVLDPITIVASVSWGSPPSESAGSSYWLLVARIHASPDHPNHRLLFPAAVL
FT                 PSPRRRPRSGLPIAVRVRSLLSSLASLPIPPTFHYLSRTPPWFVPRLQLRL
FT                 DLSSDSKASVSPMVLCRQFQALIDSFHGAEVVYTDGSLVDGRAGYAYVHGD
FT                 HVEQHSLPCGTSVFTAELVAISRALTHFRDCPGESIVICSDSLSGLLALDQ
FT                 FMPKHHLVRSIQDAVFTLGESGRSVVFVWTPGHMAFRETNESITWPSRPPH
FT                 HGP"
XX
SQ   Sequence 5968 BP; 1190 A; 1795 C; 1515 G; 1465 T; 3 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccataag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacattgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaactc tataaaaaaa acctcaatct caaggtgtgc       240
     tacgtgccga ggagatgcat ggctgttgag gttgaacagc cgctagcgag caacctctga       300
     ggaacctgcc gcacctcagt tgtataaggc ttacccaggc aagcggggct ctgcctgggt       360
     ggacctttag ttccctagct gctcgtggga ccaatgaaac gagcaaataa agcgtggccg       420
     gcgcaaaacg gcgtctctaa gcgtggcaaa acgagttcaa tgcgtcacta tgaccctaag       480
     acgtttcctt ccctgccacc ccgtgggagg aacgaagggc ccttaataga tcagagccat       540
     actcgccaca ataccttgta tgtgcgcgtt cagatggtga atccttcatg accactaagc       600
     ccagttcttt gttgaacagc tgaggacaag tttggcgaag tggaatcttt ttcgaaaatg       660
     cgagtggggc tgtgctgata cagacggcgt ccccagcaca gtcgagggca ttacttgcct       720
     gcgacaagct gggtgatgtt ccagtcagta tcacgcccca taagtcactc aacatggtcc       780
     agggtctaat ctaccacaga gatctcctct ctcagaccga tgaagagttg cgagcaaact       840
     tggaacgtcg aggggttcac ttcgtccggc gtgtgtacag gggacctaaa gatcagaggg       900
     ttgccaccgg tgcttttatc ttggccttcg aaggcgatac actgcctgag aaggtcaagg       960
     taatgatata ccggtgtgac gtaaaaccct atgtccctcc ccctatgcgg tgtttcaggt      1020
     gctggaagtt cgggcacatg tcctcccgat gtacttccag ccctaactgc agggaatgtg      1080
     ggcgaccatc gcacccggac gccccatgta ctccacctcc cgtttgcgtg aattgtgggc      1140
     aacaccatcc gccatgctcg ccgaactgtg gtgtattaca tcgcgaaaga aaaatcatgg      1200
     agataaagac cctggaccgt ttgactattc agaggcacgt aaaaagtatg agcggctcca      1260
     tccggtaaag atgacaacat cttttgccgc agtcacagcg gcaccagctt tactgcgatc      1320
     aacggacagt gttctctcct ctgtgggccc tatgggccaa caacttccac tgccccctcg      1380
     atgggtgggg gcacctcttc atctgttgct cccacaacac cacctgtggg agcaattacc      1440
     ccctctccat cggggacatc agtccccgct cccagccgga gaaggaacag cctcctccgg      1500
     ctcctctcgc tcggaagggg tccctgggac actcccttcc gaggcttctc acagtgcact      1560
     ggggatccca gccaacggct gaagggtcca cgacctgctg gtagaagggc ttctcgctct      1620
     tcttccaacc ctgatgccac tactgagaag ccctcccagg cctctaaacc aaagggccag      1680
     cgagagggac ggcagaagaa aagcaagaag aaggagactt tggtggctac aaagccacag      1740
     gcaccctcat cctctgcttc ggaggatgag gttgagatcc tcgcgtctcc tgaggatctc      1800
     gcaataccgg gttctccaga atccaggatc gctgacactg gcgattctga acagttggca      1860
     gcagacgtca tggacgaacc cgtcctactt taatatggct tttcagctcg gcgaccagta      1920
     ctccttcagt ggaattgcgg tggttttttc aaccgcctag ctgaattgca gcagttgttg      1980
     tgccgcttcc ctgtgctctg tttggcgttg caggaaacgt ggtttcctgc ccagcggacc      2040
     ccagcccttc gcggctatcg gggatactac aagaaccggg cggcatacga cagagcttca      2100
     ggaggggtct gtatctacgt tctcgcaact gtccccagtg ctgctgtgcc tctccacacg      2160
     actctggagg cagttgctgt tagaatccgg gcgatgcagg aattcaccat ctgctctatc      2220
     taccttcccc cggatgaagc tgtctctatc gccgacatcg ctgcgttgat agcacaacta      2280
     cccccaccat ttctcctttt gggggatttt aatgcccacc acccattgtg gggtggaaca      2340
     cagacgacgg gccgcggtag agatgtggag gcgcttttgt cacagcgaga cgtctgcctc      2400
     ttaaacactg gcgcccccac acacttttgc gtggcgcgag gcacgtattc ggcgatagat      2460
     ctttctgttt gtagcccgag cctgctcccg catttccgat ggaaggtcca tgatgacctt      2520
     tgcggtagcg accacttccc tatcctcgtg tcgctgctgc attttcaacc tgccggccac      2580
     cagcctcgat ggtctctccg tagagctgat tggcaacgtt acgcctcagc tgctgtggtt      2640
     cctgttccac tgccagctga tgtggacatg gcggttcacc aggtcaccag ttccatagtt      2700
     tcagccgctg aggcaactgt tcccaccact tctggctccc ctcggcgtaa gtccgtgccc      2760
     tggtggacgc cagaaatcgc tgaggccatc cgggatcgtc gacgggcgct ccagcgccac      2820
     cgccgtcatc ccaccatgga aaacctgatc gcctttaaac ggctccgggc ccgagctcga      2880
     cagctcatcc ggcagagtaa gcgggactgt tgggagcagt atgtcgccaa catcggctct      2940
     cgcgcatcct catctcaggt gtggtctcag gttcggcgcc tttttgggca ccgtccacca      3000
     gcagcaattc ccagcataaa cattcagggc actgtctgca cagaccccac tgctatcgct      3060
     gaacacatgg cggaccatta cgcttgcaac tctgcaactg cagcttacag tgcagccttc      3120
     cgtgcactga aagtgcgggt cgaacggcgg catctgtcat tccatacccg ccgtgacgaa      3180
     acgtacaatg cgccattcag tcagtgggaa ttccaaactg cccttgctgc atgccccgat      3240
     acctccccgg gaccagaccg gatccacagc cagttccttc gccacctttc agcagagtcc      3300
     caacaccagc ttctcgccct gttcaaccat ctatgggcag agggggcttt cccatcacaa      3360
     tggcgggaaa gcatcgttat cccgtgatga aacctggtgc tgacccacag gtggctgata      3420
     gttaccgccc gatcagcctc accaacgttc tctgcaagct cttagaacgt atggtgagtc      3480
     ggcggctcat gtggatactt gaacatcggg gtctgttgtc cccacgacag ggggccttcc      3540
     gccaaggccg ctccactgta gataacctgg tggctctgga gtckgccatc cgtacggcat      3600
     tcagcaggcg tgaacacctt gttgccgtct tttttgacct caggaaggcc tacgacacca      3660
     cctggcgcca ccacattctg gctacactgc acggttgggg cttgcggggc ccgctcccgc      3720
     tttttataca gaacttcctt tcgcttcgct ctttccgagt tcgtgtcggt acctccctta      3780
     gctcaccccg tatacaggag aatggagtcc cacagggctc tgtccttagt gttcctctct      3840
     ttttgatcgc tatcgacggc cttgctgcgg cagtggggtc atccgtatct tcctcactct      3900
     atgccgatga cttctgccta tatttcagtt ccactggcat gggtgtcgct gaaaggcgtc      3960
     tgcagggggc catcacaaaa gctcagtcct gggccatgac ccatgggttc cagttctctg      4020
     cctccaaaac ccgggtcatg cacttctgtc gccgtcgggc agtgcaccca gaccctgagc      4080
     tgtatttggg tcakgatttg cttcgtgttg aacagacgca ccgcttctta ggcatgcagt      4140
     tcgatgcccg gctcacgtgg gtcccacacc ttcaacagct gcggaagaag tgttggcgcc      4200
     acctgaacgt tcttcgctgc ctaagccata ccgcctgggg agcagcccgt acatctctcc      4260
     tgcaactgta taaggctctt atccaatccc gtctggatta tggcagcctg gtatacgatt      4320
     ctgcggcccc ttctgcactg cgtgtcttgg acccaatcac catagtggcg tccgtttagc      4380
     gacgggtgcc ttccgcacaa gtcccgtgac aagtctcctt gctgaagctg gggttccccc      4440
     ccctccgaat ccgccggcag cagctactgg cttctagttg cccgtattca tgcctcacct      4500
     gaccacccga atcacaggct tctgttccca gctgccgtcc tcccttcccc acgacgacgt      4560
     ccacggtcgg gtctcccgat tgcggttcgt gttcgttccc ttctttcgtc ccttgcatcc      4620
     cttcctatcc ctcccacatt ccactacctt tcccgtacac ctccatggtt tgtacctcgc      4680
     ctacagcttc ggttagactt gtccagtgac tcgaaagcct cagtttcgcc aatggtcctt      4740
     tgtcgccagt tccaggcact cattgattct ttccatggtg cagaagtagt atacaccgat      4800
     ggttcccttg tggacggccg tgctgggtac gcttatgttc atggtgacca cgttgagcag      4860
     cattccttac cctgtgggac tagtgttttc acagctgagc tggtggccat ctctcgcgct      4920
     cttacacatt tccgcgactg ccccggggag tctatagtta tctgtagtga ctccctgagt      4980
     ggcctgctcg cccttgacca gtttatgcca aagcaccatt tggttcggtc cattcaggac      5040
     gccgttttca cccttggcga gtcaggccgt tcggtggttt tcgtttggac cccaggccac      5100
     atggcattcc gggaaacgaa cgagtcgatc acctggccaa gcaggccacc acatcacggc      5160
     ccttgaagat tggtctccaa gacagggatt tcagactgca actgacccgt aaggttctgg      5220
     gatttggacc tcggaatggg ctgccttgaa cgaaccgaat aagctgcgcg tagtcaagcc      5280
     cccacagccg tgtggagatc ctccctgcga gcctctcgta gggagtctgt agtcctctgc      5340
     agactacgta ttggmcatac gtggttgaca cacggccacc ttctacgcga gaggacccac      5400
     caaattgccg ttgtggtgca ctattgacgt ggtccacatc ctggtggact gcccactttt      5460
     agccgacttg aggcagtctt ttaccctgcc ttctgagctt ccattgattt tatctgacga      5520
     tgcctctatg gttgaccgtg ttttaggttt tattcgcgca gctggctttt attggtctat      5580
     ttagtggtgg ggcctatttg cccgccttct cgggctccca cccctccaga acaataggcc      5640
     gttgtccttt tacggtttat gacttgtttt tcaattaagg attttagtgt gtgcagagtg      5700
     gctggctcat cctgtattat ccttgtgatc agccagccac actcttctgc tgtcctattt      5760
     tagttttctg tctatttggt caactcctgt ctgtcctctg ttatatgtcg tcattttacc      5820
     attgactgtc tctctgtacc cggagtatac tggacgtgga gtactatgcg acaaaaggga      5880
     aacttttaaa agtgaactct tagctgggaa caggggactg ataacccagc agtttagtcc      5940
     cctttaaaca cccaacaaca acaacaac                                         5968
//
ID   Nimb-23_LMi repbase;    DNA;    INV; 5953 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5953
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3415-3415 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(395..808,783..1352,1031..1906,1861..3036,
FT                 2919..5606)
FT                 /product="Nimb-23_LMi_1p"
FT                 /translation="MKRTQSNAGGRLTTVSKKGKVDFNAESYDPQSFPSLA
FT                 TPWEERRSRSQGQQYAPRYLVCSRTDGESFMNTKPLFFVENLEDKFGEVDG
FT                 MSKMRSGSVLITTSSPAQSRALLACDKLGDVPVTITPHKSLNMVQGIDLPT
FT                 WYRVLIFHRDLLLQSDDELRKNLERRGVHFIRRVHRGPKDNRVATGAFILA
FT                 FEGDSLPEKVKVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCTANSTCRDC
FT                 GRASHPDLPCTPPPICVTVDSSTHLARLPALYCTKNGRSCNTKPWTGCLIQ
FT                 RLRGNMRNSTRSASNRLMQQPRHHFSRLVCHLFRQSMLEVWAHVLQVYCQL
FT                 HLSGLWPCIAPRPPLYTTSHLCNCGQQHPPCSPTCSVLHKERKIMQYKTMD
FT                 RLSYSEAKRKYEKLHPVSIKPSYAAATTPFQQTSLPSVPSILVGPQAQPSP
FT                 SAPLVVGGTSHTVAPKAPALEAKTPQPMGTSVPTREPEPQQPALAPLARKG
FT                 SLESLSPSVSPTGTVDASEWHQVPSKAGRRASRATSVPETESAKPSQRERP
FT                 KDQREKQKKTKTKDSQVATMPPQKSSASEDVVEILASPEDLAIAKTLEAMD
FT                 VEALPPESVTAEKPVGPTLPSAVSDCRETCGPYSTICINMPSKSGDSVVLQ
FT                 WNCGGFFRHLAELQQLLCHYPSLCVALQETWFPAERTPALRGYRGYYKNRA
FT                 TYNRVSGGVCLYVLATVPSSPVPLNTVLEAVAVRIQARQDITICSLYLPPD
FT                 EAVSPADLANLIAQLPPPFLLLGDFNAHNPLWGGSQVSGRGRDIEALIAQL
FT                 DCCLLNTGAPTHFSVAHGTYSAIDLSLCSPSLLPQLHWGVHDDLCGSDHFP
FT                 IHISLLQYQPPDRLPRWSLRRADWPAYTSATRVIPPIPDDVDQAAHHITRA
FT                 IISAAEASVPTTTGSVRRKSVPWWSAEIAEAIRERRRALQRHRRHPCIEHL
FT                 IAFKRLRAQARRLIRQSKQDCWERYVATIGSRAPPHLGCGHRFGAFLGTDH
FT                 RRESPAAGLLGEICRYHRLSCAAPSRVWSQVRRLFGYRPQAGIPSLIIQGT
FT                 ICLDPAAISEHMADHYASNSATSAYIAGFRTRKEQVERRQLSFHTRRREPY
FT                 NAPFTEWEFQSALTACPDTTPGPDRIHKQFLRHLSQXFQDQLLALFNRLWV
FT                 EGVFPSQWRDSIVIPVIKPGADPQVADSYRPISLTNVPCKLLERMVSRRLM
FT                 WVLEDRRLLAPQQGGFRQGRSALDNLVPLESAIRTAFARREHLVAVFFDLR
FT                 KAYDTTWRYHILATLHDWGLRGPLPLFIQNFLSLRTFRVRVVPTSDPRTQE
FT                 NGVPQGSVLSVPLFLIAINGLAAAVGSSVSSSLYADDFCLYYSSVSIGVTE
FT                 RRLQGAIQRAHSWALAHGFRFSASKTRVMHFCRRRAVHPDPELYLGDDLLR
FT                 VEDTHRFLGMLFDARLTWVPHLQQLRQKCWRYLNILRCLSHTAWGAARPTL
FT                 LQLYTALIQSRLDYGSQVYDSAAPSALRVLDPILNAGVRLATGAFRTSPVM
FT                 SLLVEAGVPPLRFRRQQLLASYVARVHTSDHHPNRRLLFPTAALPSPQRRP
FT                 RSGLPIAVRVHSLLSSLESLPFPPTFHYSSHTPPWCIPRLQLRLDLSRDSK
FT                 ASISPSILRRQFQELLDSFHGAEVIYTDGSLVDGHAGYAYLHGDLFEQRSL
FT                 PSGSSVFTAELVAISRALEHLRACPGESFVICSDSLSGLRALDQCFSKLPL
FT                 VQSIQDSVAALNRSGRSVVFVWTPGHIGIPGNERVDQLAKQATSSRPLEIG
FT                 LVETDLRWTLHRKVRDAWSSEWSALSAPNKLRTIKPSTATWKTSLRPNRRD
FT                 SVVLCRLRIGHTWLTHGYLLRREPPPMCRCGGALTVVHLLMDCTVLAPLRQ
FT                 SFNLPPTLSLVLGDDASMAESVLRFIRAAGFYNSI"
XX
SQ   Sequence 5953 BP; 1244 A; 1751 C; 1480 G; 1477 T; 1 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa actcaatctc aaggtgtgct       240
     acgtgccgag gagatgcatg gctgttgagg ttgaacagcc gctagcgagc aacctctgag       300
     gaacccgccg aacctcagtt gtataaggct tacccaggca agcggggctc tgcctgggtg       360
     gacctttatt tccctagctg ctcgtgggaa caccatgaaa agaacccaga gtaacgctgg       420
     tgggcgttta accaccgtct ctaagaaagg aaaggtagat ttcaacgctg agagttatga       480
     cccccagtcg ttcccttcct tggccacgcc atgggaggaa cgcaggtctc gaagccaagg       540
     acagcaatat gctccaaggt atttagtgtg ttctaggact gatggcgaat ctttcatgaa       600
     cacaaagcct ctcttttttg tagaaaactt ggaagataag tttggagaag tagacggcat       660
     gtcgaagatg cgatcgggat cggttctaat aacgacgtca tccccagcac agtcacgggc       720
     actgctcgcc tgtgacaagc tgggtgatgt tcccgttact atcaccccac acaaaagcct       780
     gaacatggta cagggtattg atcttccata gggatctcct cttgcagtca gatgacgaac       840
     tccgcaagaa cttggaacgg cgaggagtcc attttatacg gcgagtccat aggggtccga       900
     aggacaacag ggtcgccacc ggtgcattca tcttggcctt cgagggcgac tcattgcctg       960
     agaaggtcaa ggtgatgatt taccggtgtg acgtgaagcc ctacgttcct ccccctatgc      1020
     gctgttttaa atgctggagg tttgggcaca tgtcctccag gtgtactgcc aactccacct      1080
     gtcgggactg tggccgtgca tcgcacccag acctcccttg tacaccacct cccatctgtg      1140
     taactgtgga cagcagcacc caccttgctc gcctacctgc tctgtactgc acaaagaacg      1200
     gaagatcatg caatacaaaa ccatggaccg gctgtcttat tcagaggcta agaggaaata      1260
     tgagaaactc cacccggtca gcatcaaacc gtcttatgca gcagccacga caccatttca      1320
     gcagactagt ttgccatctg ttccgtcaat cctagtgggc cctcaagccc aaccgtcacc      1380
     atctgccccc ttggtggtag ggggcacatc tcacactgtt gcccccaaag cccctgcctt      1440
     ggaagcaaaa accccccaac caatggggac atcggtcccc acacgtgagc cagagccaca      1500
     acagcctgct ctggctcctc tcgcgaggaa gggatcgctt gaatcccttt ctccctcggt      1560
     ttctcccact ggcacagtgg acgccagtga gtggcaccaa gtgccttcca aagctggtcg      1620
     tagggcctca agggcaacct ccgtccctga gactgagtct gccaagccct cccagcgcga      1680
     gaggccgaag gatcagcgag agaaacagaa gaaaactaaa acaaaagatt ctcaggtggc      1740
     taccatgcca ccacaaaaat cgtctgcttc cgaggacgtg gtggagatcc tcgcgtcccc      1800
     tgaagacttg gcaattgcca agactttgga agcaatggac gtcgaggctc tgcctcctga      1860
     gtcagtgact gcagagaaac ctgtgggccc tactctacca tctgcataaa tatgcccagt      1920
     aagtcgggag atagtgtggt gctgcagtgg aactgtggcg gtttcttccg ccacttggcc      1980
     gagttacagc agttgctatg tcactaccct tccctctgtg ttgcactaca ggaaacctgg      2040
     tttcctgccg agcggactcc tgcccttcgt gggtataggg gttactataa aaaccgcgca      2100
     acatacaaca gggtatccgg aggagtctgt ctttacgttc ttgccactgt ccccagttca      2160
     ccagtgccac ttaacacagt gctcgaggca gtggctgtga gaattcaggc acgacaggac      2220
     attaccatct gctcactcta ccttcctccg gatgaggcag tgtctcctgc agaccttgcg      2280
     aacttgatcg cacaacttcc cccgccattc ctcctattgg gggatttcaa tgcccacaac      2340
     cccttgtggg gtggctctca ggtctcaggt cgtggtaggg acattgaagc cctaatagca      2400
     cagctggact gctgccttct caataccggt gcccccacac atttcagtgt ggcgcatggc      2460
     acatactcgg ctatagacct ttctctctgc agcccaagcc ttctaccaca gcttcattgg      2520
     ggggtccacg atgacctatg tggtagcgac cacttcccca tccatatctc tcttctccag      2580
     tatcaacctc cagatcgctt gccccgttgg tctctgcgta gggctgactg gcctgcttac      2640
     acctcggcta ctagggtgat tcctccaatc ccggacgatg ttgatcaggc tgctcatcac      2700
     attactagag ccatcatttc cgctgctgaa gccagtgttc cgaccaccac tggctcagtt      2760
     cggcgcaagt cggttccgtg gtggtctgca gagattgctg aggccatcag ggaacgtcgt      2820
     cgggcactcc agcgccaccg gcgccaccct tgtatagagc acctgatcgc tttcaaacga      2880
     ctccgggcac aagctcggag gctgatacgc cagagtaagc aggactgttg ggagagatat      2940
     gtcgctacca tcggctctcg tgcgccgccc catctcgggt gtggtcacag gttcggcgcc      3000
     tttttgggta ccgaccacag gcgggaatcc ccagcttgat cattcagggt actatatgcc      3060
     tggatccagc tgctatctct gaacacatgg cggaccatta tgccagtaac tctgcgactt      3120
     ctgcttatat tgcgggcttc cgcacccgca aagaacaggt cgagcggagg cagctgtctt      3180
     tccacacacg tcggcgagaa ccatataatg ccccattcac tgagtgggag ttccagagtg      3240
     ccctcactgc ttgccctgat accaccccag ggccagatcg aatccacaaa cagttcctgc      3300
     gccacctgtc acaggasttt caagaccaac ttctcgccct gttcaatcgc ctctgggttg      3360
     aaggtgtttt cccatctcaa tggcgggaca gcatcgtcat cccagtgata aaacctggcg      3420
     ctgatccaca ggtggcagac agttaccgcc cgattagcct caccaacgtt ccttgcaagc      3480
     tcctggaacg tatggtgagt cggcggctca tgtgggttct tgaagaccgt agactcctcg      3540
     ccccacaaca agggggattc cgccaaggcc gttctgcatt agacaatcta gttccgctgg      3600
     agtcggccat ccgcactgct ttcgccaggc gtgagcacct ggttgcagtc tttttcgatc      3660
     tccgaaaggc ttatgacact acctggcgct accatattct agctacgctg catgactggg      3720
     gcttgagagg accgcttccg ctgttcatcc agaacttcct ctcacttcgc acttttcggg      3780
     ttagggtggt acccacctca gatccacgca cccaggagaa tggagtccca cagggctccg      3840
     ttcttagtgt tccgctgttt ctgattgcaa tcaacggact tgctgcagca gtggggtcat      3900
     cggtgtcctc ctcactgtat gccgatgact tttgtctgta ttacagttca gttagtattg      3960
     gtgtcactga aaggcgacta cagggagcca ttcaaagggc gcattcctgg gctttagccc      4020
     atgggttccg gttctctgcc tccaaaactc gggttatgca cttttgccgc cgtcgggcag      4080
     tgcacccaga cccggaactg tacttgggtg acgacctcct tcgtgttgaa gatacgcatc      4140
     gcttcttggg catgctgttc gatgcccggc tcacgtgggt cccccaccta caacagcttc      4200
     gacaaaagtg ctggcggtac ttaaacatac tgcgctgcct cagccacact gcttggggag      4260
     ccgcccgtcc aaccctctta caactttata cggctctcat ccagtcccgc ctggattatg      4320
     ggagccaggt gtacgactcg gcagcccctt ctgcgctccg ggtcttagac cccatcctaa      4380
     atgctggtgt tcgcttggca acgggagcct ttcgtacgag cccggtgatg agcctccttg      4440
     ttgaggctgg ggttccccca ctgcggttcc gtcggcaaca gttgttggcc tcgtatgttg      4500
     ctcgtgtcca cacctcagac catcatccga atcgcaggct tctcttccca actgctgcac      4560
     tcccatcccc tcaaagacgg cctcggtcgg gtctcccgat tgcagtccgt gtccattccc      4620
     ttctctcctc ccttgaatcc cttcccttcc ctcctacttt ccactactct tcccatacac      4680
     ctccttggtg tattcctcgt ctgcagctac ggttggactt gtcccgggac tcgaaagcct      4740
     ccatttcacc atcgattctt cgtcgccagt tccaggaact ccttgactca ttccatggcg      4800
     cggaagtcat ctataccgat ggttccctgg tagatggcca tgctgggtac gcctatctcc      4860
     atggtgacct ttttgaacag cggtctttgc caagtgggag tagtgttttc actgcagagc      4920
     tggtcgctat ctctagagct ctggaacatc tccgagcctg ccccggggag tcgtttgtca      4980
     tctgtagcga ctccctgagt ggcttgcgag cactcgacca gtgtttcagc aaactccctc      5040
     tggtgcagag tatccaagac tctgttgccg ctctcaatag gtctggtcgc tcagtggtct      5100
     ttgtttggac cccagggcac atcggcattc ctggcaatga acgtgtggat cagttggcca      5160
     aacaggccac ctcctcacgc cctcttgaaa ttggtctcgt ggaaacggac cttaggtgga      5220
     cgctacaccg gaaggtgcga gacgcttgga gctcggaatg gtctgcactg agtgcgccaa      5280
     acaagcttcg cacgatcaaa ccatccacag ccacatggaa aacttcactg aggcccaatc      5340
     gtcgagactc cgttgtgcta tgccgcctcc gtatcgggca cacttggttg actcacggct      5400
     atttacttcg ccgtgagcca ccgcccatgt gtcgctgtgg tggtgccttg acagtggttc      5460
     atctcctgat ggactgtact gttttagccc ccttgcggca gtcttttaat cttccaccta      5520
     ccctatcctt agtgctaggg gacgatgcct ccatggctga gtctgtgcta cgttttatcc      5580
     gtgcagccgg tttttacaat tccatttaat gtagggtgat ttctcctgac ttttaaccgt      5640
     attttaatgt tttatgtctt ctgactagca gacattcgtg tctgctgtga cattcgtgac      5700
     tggcccgtcc attattatct cagtgaccag ccagccacgg attctcattg ccaaatttta      5760
     gcgtgattga ctacattgtt ttattttcta tatctgtgct gttggtttct gctgttgtga      5820
     aattcatcgt tgacatgtac tcctcttgag tattcatacg gctattgttt ccaattaaat      5880
     ggacattctt tgttaggaac aggggactga tgaccaagta gtttagtccc ctctaaacaa      5940
     caacaacaac aac                                                         5953
//
ID   Nimb-24_LMi repbase;    DNA;    INV; 6250 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 19.12, Created)
DT   02-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6250
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3416-3416 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(934..2031,2050..4866,4560..5873)
FT                 /product="Nimb-24_LMi_1p"
FT                 /translation="MSKLRDGSVLIQAETPAQSRSLLTCDHLGDIPVSITP
FT                 HKSLNRVQGVIYHRDLLLQTDEELRDNLQRRGVHFVRRVFRGPKDNRVATG
FT                 AFVLAFEGDNLPEKVKVMMYRCDVQPYIPPPMRCFKCWRFGHMSSRCNAAA
FT                 TCRDCGRPSHPDTACAPPPYCVNCGGHHSPCSQDCPALHKERKIVEYKTLD
FT                 RLTYSEARRKYEKLHPVSLLTSYAAATTMAPPPVATSRPALPPSVGPMGRP
FT                 STSASQTSGGTPSSAGPVLPPTSGVVTPAPQPEKGSPSLASSSGKGTCSPL
FT                 PTMSPQKSDTSQRLKDPRPESRLAPQSSHTPQAPPEKPPSSGRPKERREDK
FT                 KEKKERRKAQGDAGGLGAPSPCTGHPSRDARRFGLCRSRGCHGHGGSDFTA
FT                 RDECSCHPSSIFIVFMHRQSGDSLILQWNCGGFFCHLAELRQLLSSFPTLC
FT                 VALQETWFPGDRTPTLRGYRGYFNNRTVYNRVSGGVCLYVHTSVYSSPVPL
FT                 QTALEAVAVRVRASRDITICSLYLPPDADVAPADLAALIAQLPSPFLLLGD
FT                 FNAHHPMWGSNVTTGRGRDFELLFNQLDLCILNTGAPTHFSVAHGTFSAID
FT                 LSVCSPGLRPLLNWWVHDDLCGSDHFPIFLSLPHHQRHARLPRWSFHRADW
FT                 AAYTSAAMLDTPLPADATMAVDQIISVVVSAAESAIPSSSALPRRRPVPWW
FT                 SPEIAAAIRNRRRALQQYRRHPTVDHLVAFKRLRAQTRRLIRQRKQACWEE
FT                 YVSTIGPRVSSTQIWTKIRRISGYHPPAGVAGLSIRGTIHTDPTIIAEYFA
FT                 AHFALNSASTAYSQGFCTLKERAERKQLVFRTNRQEPYNAPFTEWEFQSIL
FT                 ASCPNTSPGPDRIHCQMLKHLSVNSQRHLLDFFNRLWIEGAYPSQWQESIV
FT                 IPLLKPGADPLNVDSYRPISLTNVLCKLFERLVSRRLLWVLEYRGLLAPQQ
FT                 GAFRQGRSAIDNLLSLESAIRTAFARRHHLVAIFFDLRKAYDTAWRHHILA
FT                 TLHGWGLRGSLPLFIQNFLLSRRFRVRVGTSFSSPHIQENGVPQGSVLSVP
FT                 LFLVAINGLVAAVGPSVSCSLYADDFCLYYSTASTSVAERRLQAAIHRAQN
FT                 WASAHGFTFSPAKTRVMHFCRQRTVHPHPELYLDGELLQVVDTHRFLGLLF
FT                 DSRLTWLPHLRQLKQRCSRHLDVLRCLSHTVWGAARPILLRLYNALVQSRL
FT                 DYGSQVYGSASPSALRVLDPVHHTGIRLATGAFRTSPVTSLLAEAGVAPLR
FT                 YRRNTYSPSMLPESTVPLGIQITDSFSRGRSFVCRRGDPGRDSRRSGAVTS
FT                 GLREPGLWLSLPICTESSRPSPPYRHPSGHWSLSYEPCHESSRRGWSRPIA
FT                 IPAQHLLAQYAARVHCTPRHPNNRLLFPGEVIRLPQRRPRSGLPIAARVQS
FT                 LLSTLDSFPLNRPFRSTFHAPPWTIPRPRIRLDLSREPKTSTSPLVLRHQF
FT                 YALLREFRNSEVIYTDGSSDGDHTGYAYMHGAYVEQRSLPPGSSVFTAELV
FT                 AIYRALKHIRTCPGTSFLICSDSLSGLQALDQCYPRHTLVRAIQESILALD
FT                 DSGRSVTFIWTPGHVGIPGNESVDQLAKQATTCRPLAIGLPEADFRPLLRN
FT                 KIRELWNAEWSALDVPNKLRTIKDTTSVWKSSQLGSRRDSVALCRLRIGHT
FT                 RLTHGHLLRREDPPVCQCGAPLTVVHLLLHCPILAPLRHSFNLPNTLSLVL
FT                 GDDASVANMVLRFLRAGGIYQLL"
XX
SQ   Sequence 6250 BP; 1216 A; 1936 C; 1493 G; 1604 T; 1 other;
     ccccccaggg ggcccacagc tcttttgtgg gtacgtgtgt ggcgcgcacg ggtccccgag        60
     ccattgcggc cttccttcct gtttcccagg ccgcttttcc tcaccccggt tccctcccct       120
     ccctaatcct tcttcccacc ctacccttct ccaaccccgt ctctaggtgt tctcgcgatg       180
     acggcccggc tatttccacg gtactgctgg tttcgcaatt gtgtctttgt ttgccgtttt       240
     caccgatttc ggcccagtta ggtccccctc ggggtttgac ctccatcaaa atttcagagt       300
     aagtgtgagc catttgggga agaactccca acctagcccc tacggcgcgg attcctaccc       360
     tttccttcca aatccctctt cctcgccgta gctccctccc ccgctaggtc accagcacgg       420
     tagccagtcc gtgtggtggg gctgttatgt accctcatgg ttgagccccc tgaattgcac       480
     agggatcaca ctgccgatgc ctgagctgtg acctcctcat gaatgccaag gagtcgatgc       540
     ttgtctctgc ggggcatcag gactcccagc aacggtcatc ctgccaggtg gcgttgctgt       600
     ggctgggtgg cgcccttgag gagagcccct gtttcggagt gggtggcatc ggggcggaca       660
     ttccgcaatg aagaggaaac aaacctctga aaatcctggc tctaagtcag gtgtctcaag       720
     tgtggtaagt ttaatttcaa tgctgcaaga tacgacccca aatcgtttcc ttccctaact       780
     ccatcatggg gggaacgtgg gcccacaaag cagactgaac catactcacc acgataccta       840
     gttgttacca gacaggatgg ggaatctttc caggcaacta agccttcctt cttcgtcgaa       900
     cacctcgaag aaaggtttgg agaagttgcc ggtatgtcta aactgcgcga cggttcggtc       960
     ctgatacagg cggagacccc tgctcagtca cgaagcctcc taacgtgtga ccacttaggc      1020
     gatattcctg tctcaataac gccccacaaa tccttaaata gggtacaggg ggtcatatat      1080
     catagagacc ttttgctgca gacagatgag gagttacgcg acaatctaca acgacgcgga      1140
     gtccattttg tccgacgcgt ttttcgggga ccgaaagata atagggtggc cactggcgca      1200
     tttgtcttgg cctttgaggg tgacaatctg cccgaaaagg tcaaagtcat gatgtatcga      1260
     tgtgacgtcc agccgtacat cccccctcca atgcgatgtt ttaagtgttg gcgtttcggg      1320
     cacatgtcct ctcgttgcaa cgctgctgca acctgtcggg actgtggccg tccctcacat      1380
     ccggacactg cctgtgcccc tcctccttat tgtgtcaact gcggcggtca ccactctccc      1440
     tgttcgcagg actgtcccgc tctacataaa gagcggaaga tagtcgagta caagactttg      1500
     gaccgactaa catactcaga ggctcggagg aaatacgaaa agctgcatcc agtctcttta      1560
     ctaacgtcat atgctgcagc tacaacgatg gcgccaccac cggtggccac ttctcgccct      1620
     gctctacctc catctgtggg ccctatgggc cgcccctcta cctcagcctc ccagacatct      1680
     gggggcacac catcttctgc ggggcctgta ctgcccccca cgtcgggagt ggttaccccc      1740
     gctccccagc cagaaaaggg ttccccttct ctggcttctt cttctgggaa gggaacctgt      1800
     tctccccttc caaccatgtc accccagaaa tcagacacta gccagcggct gaaggaccct      1860
     cggccagaaa gccgtctggc tcctcagtct tcccacactc ctcaagcccc tccggagaaa      1920
     cccccctcct ccggtaggcc caaggaacga cgggaagaca agaaagaaaa gaaggaaaga      1980
     cgtaaagcgc aaggagacgc tggcggcctc ggtgccccca gcccttgcac ctgacgcgcc      2040
     tgaggatgag gtcatccttc tcgcgacgcc agaagatttg gcctttgccg atctcgggga      2100
     tgccatggac acggaggatc agacttcaca gccagagacg agtgctcatg ccatccctct      2160
     tccatcttca tcgtcttcat gcaccgtcaa tcaggagaca gtctgatcct ccaatggaat      2220
     tgtggaggtt ttttctgcca cttggctgaa ttgcgtcagc tgttgagctc ctttccaact      2280
     ctttgtgttg ctctccagga aacctggttt cctggtgatc ggacccccac ccttcggggc      2340
     taccgggggt acttcaataa ccgcacggtc tacaataggg tgtcgggtgg ggtatgtcta      2400
     tatgtacata cctctgtcta cagttcccca gtgccacttc aaacagccct ggaggctgtc      2460
     gctgtcaggg ttcgagcatc acgggacatt accatctgtt ccctttatct ccctcctgat      2520
     gcagatgtgg caccagccga cctagcagcc ctgatcgctc aacttccttc gccatttctt      2580
     cttttaggag attttaacgc tcatcacccc atgtggggga gcaacgtgac tacaggacgt      2640
     ggtcgagact ttgaactgct ttttaaccag cttgaccttt gtattcttaa tacaggagct      2700
     cctacccatt ttagtgtggc ccatggcacc ttttccgcca tagacctttc tgtgtgtagt      2760
     ccgggcttac gtccactcct taactggtgg gtccatgatg acctttgtgg aagcgaccac      2820
     tttcccatct tcctttcgct tccccaccac caacgccatg cacgcctacc ccgctggtcc      2880
     ttccacaggg ccgactgggc agcatacact tcagctgcaa tgctggatac ccctctccct      2940
     gctgatgcga caatggcagt agaccagatt atttccgttg tcgtttctgc cgctgagtcc      3000
     gcgataccat cttcttctgc cttaccccgg cgaagaccag tgccctggtg gtcaccggag      3060
     atagcagcag ctattcgcaa tcgccgcaga gctctgcagc agtaccggcg ccaccccacc      3120
     gttgaccacc tggttgcctt taaacgtctt cgggcccaga cgcggcggct catccggcag      3180
     cgcaagcagg catgctggga agaatacgtt tccacaattg gaccccgtgt ctcttctacc      3240
     cagatctgga cgaagattcg ccgcatatca ggctaccacc caccggcagg ggtcgcgggt      3300
     ctctctatcc gtggtactat ccataccgac ccgaccatca ttgccgagta ttttgcagcg      3360
     cactttgctc tcaattcggc gtccactgcc tacagccaag gtttttgtac cttgaaagag      3420
     cgggctgagc gaaagcagtt ggtatttcgc acaaaccgcc aggagccgta caatgcgcca      3480
     tttaccgagt gggaatttca aagtattctt gccagttgcc ccaatacatc tccaggaccg      3540
     gaccgaatcc actgtcaaat gctaaaacat ctttctgtaa actcgcaacg ccatcttttg      3600
     gatttcttca atcgtctctg gatcgaggga gcatacccgt cccaatggca ggagagtatc      3660
     gttatccctc tgttgaaacc aggtgcagat ccattgaacg ttgacagtta ccgtcccata      3720
     agtctcacaa acgttctttg taagcttttt gaacgtttgg tgagccggcg acttctgtgg      3780
     gttctcgagt atcggggtct gctcgcccca caacaaggtg ctttccggca gggtcgctct      3840
     gccattgata acctcctctc tttggagtcg gcgatccgta ctgctttcgc ccgacgtcac      3900
     cacctcgtcg ccatcttttt cgacctccgg aaagcatatg acacggcatg gcgtcatcac      3960
     atccttgcca cgctacatgg gtggggtctc cgtggctccc tcccactttt tattcagaat      4020
     tttttacttt cgcgccgctt cagagttcgc gttggcacct ccttcagttc cccccatatc      4080
     caagagaatg gggtaccaca agggtccgtc ctaagtgtac ccctcttctt agtggccatt      4140
     aatggcctag tggctgcagt ggggccatca gtttcttgct ctctctatgc ggacgacttt      4200
     tgcctgtact attctaccgc tagtacaagt gtagctgaac gacgactgca ggcagccatt      4260
     catcgggcgc agaattgggc ttctgcccat ggttttacat tttcccctgc gaaaactagg      4320
     gtgatgcact tttgtcgcca acggacggta catccgcatc cggagctcta ccttgatggt      4380
     gagctccttc aggttgtgga cacacaccgc ttcctgggtc tcctttttga ctcacgtttg      4440
     acatggctcc ctcatctgcg ccagcttaag caacggtgct cacgacatct ggacgtcctt      4500
     cgttgcctca gccatactgt ctggggggca gcacgcccta tcctcctccg gctgtataac      4560
     gctctggtgc agtcacgtct ggactacggg agccaggtct atggctcagc ctccccatct      4620
     gcactgagag ttctcgaccc agtccaccat accggcatcc gtctggccac tggagccttt      4680
     cgtacgagcc ctgtcacgag tcttctcgca gaggctggag tcgccccatt gcgataccgg      4740
     cgcaacacct actcgcccag tatgctgcca gagtccactg tacccctcgg catccaaata      4800
     acagactcct tttcccgggg gaggtcattc gtttgccgca gaggcgaccc cggtcgggac      4860
     tcccgatagc agcgcgggtc caatcgcttc tttcgaccct tgactccttc cctcttaacc      4920
     gtcccttccg ctcaactttc catgctcctc cctggaccat tcctcgaccg cggattcggt      4980
     tggatctttc ccgtgagccg aagacctcca cctctcctct ggtcctacgg catcagtttt      5040
     atgccctgct tcgtgagttc cgtaactcag aggtcattta tacagacggt tcttcggatg      5100
     gcgaccacac cggatatgcc tacatgcatg gcgcttatgt tgagcaacgc tctttgccac      5160
     ccggcagcag cgtcttcact gcagaactgg tggctatata ccgcgccctt aaacacatcc      5220
     gcacatgccc cgggacctcc ttcctgatct gcagcgactc gctgagcggt ttacaggccc      5280
     ttgatcagtg ttacccccgt catacattgg tcagggccat tcaggagtcg atactggctc      5340
     ttgatgactc tggtcgctct gtgacattca tttggacccc gggccatgta ggcattccgg      5400
     gcaacgagag cgtcgaccag ctagccaaac aggctaccac ttgccgccct ctggcgattg      5460
     gcctcccaga agcagacttc cgcccgttgc ttcgcaataa aatacgcgaa ctgtggaacg      5520
     ccgaatggtc cgctctggac gtgcccaata agctgcggac gatmaaggac acaacatctg      5580
     tctggaagtc ctcgcagctg gggtcccgta gggactccgt ggccctctgc cgtctccgca      5640
     ttggtcacac ccgtctgacg catggtcacc tcctccgtcg agaggacccg cccgtgtgcc      5700
     aatgtggtgc tccattgaca gtggtccatc tcctactcca ctgtcccatt ttagctccac      5760
     tgcggcattc ttttaacctc ccgaacactc tctctttggt gctcggcgac gatgcctctg      5820
     tggctaatat ggttttacga tttcttcgtg ctggggggat ttaccagttg ctatgagtcc      5880
     tctgggtggt cttttagatc attatctatg ttccacttga cgcgtctttc gactacagct      5940
     tttcttgtgt acgctatgtg gttggctttt ccctttttat acccatggtc ggtcaaccac      6000
     attcattggc tctgtcattt ttatctcgta tttgttactg tgtgtctggc gtcttttgta      6060
     tcgtctcttg ttgactctgt caatatttca ttgacggtgc gttcttttat tctgcgctat      6120
     tttaaatcta gctcaggcgc atttatcgac gattatgttt ttctgcgtgt cgcctagcta      6180
     tgaagtgggg gactgatggc catagtagtc tagtccccct aaaacccccc ataccaacca      6240
     accaaccaac                                                             6250
//
ID   Nimb-25_LMi repbase;    DNA;    INV; 5598 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5598
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 203-203 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(306..620,560..1351)
FT                 /product="Nimb-25_LMi_1p"
FT                 /translation="MDHLSNLNPGGMGVPSGSTHTHKTKRMREASPPEKIL
FT                 VNSNRAQGVINHNVFLVVKRTEGTFEKISPFFINKGLEGLAGTLKSIKRLR
FT                 NGSLSLRPTGQRRWICSEAAQWFSLVETNRATQVDLLMKSSKLGDYEIVVE
FT                 LHNSLNSSKGVVTCRDIMDLDTAELKEEWASQGIIDVEQRIRRTNGVVEKT
FT                 ATFIVTFNSPTLPAHIMAGFLRLKVRPYIPNPMRCYKCQRFGHTTQNCGGE
FT                 PTCGKCAQAAHESGADCPSPALCINCSGSHPVWSRECPVFAEERKIQEIKV
FT                 TKRIPYVEAKKEYKATTPPVFPISYASLVQKSIPTVDASTQTPPFVPISTT
FT                 STCTCTCTCQSQTSKDVAIQADPTVQ"
FT   CDS           join(1508..1651,1641..2429,2348..5344)
FT                 /product="Nimb-25_LMi_2p"
FT                 /translation="MAALTDDEDIIMELDASSPEPGSPSDTPRSQSASPSR
FT                 HKQRGKLDPHRTHIDNMATILQWNMNGFRTRLGELQLLVRDRPFCISLQET
FT                 HFKQGDTPVLKGYHLYRKDNLAGDRAQGGVAVFVRDTFHSSPVPLTTTLQA
FT                 VAVRVLAHLSMTVCSLYLPPGEYVDSHLLTDLIRELPRPFLLLGDFNAHNR
FT                 LWGSNNDCPRGRMVENVIHSPDVILLNTGKPTHFSTATGSSSAIDLSLCSP
FT                 TLSHTVQWDVDEDLHGSDHYPIWLNLPAGMDRDVKPPRWLVDKADWGFIHS
FT                 WLSSSGLTVSRIGWITLHQSRLGLYTQLAVFERFDCVQDWVDHITSVIHNA
FT                 ADASIPKSKPTLRRPAVPWWNDDCRSAIRARRAALRRFHRCPTEANLANFR
FT                 VARARARWVIRESKQRSWQEFLNSINRSTSASRVWEAIRRISRRNSRPPIA
FT                 AVQGQGRLLTSSRDIAQVMAESYESITSDSSQDPAFCRYRAIQERVGFDFR
FT                 SSNVEDYNQPFSLWELESALSVTRDTAPGHDEITYSMLRHLNTRSKEVLLH
FT                 LFNEIWITGNFPCSWKESILIPILKPGKDRTDPGSYRSISLTSCIGKTLER
FT                 MVNRRLVWVLERRSLLSRSQCGFRRYHSTLDNLTLLESAIQQAFLRKQHLI
FT                 GVFFDLEKAYDTTWRRLVVQQLYEWGFRGRLPTFIRSFLSDRYFRYKVGSA
FT                 LSDRFKQENGVPQGSVLSVTAFAIAINSITSTVRPPVQCSLFVDDFSIFCA
FT                 SSSIATAARQLHLTIRRLEEWCNTTGFKFSLEKTVCVDFNHSRSLFNTPVL
FT                 KLGDTVLTFQDKVKYLGLTFDERLTWLPHLKEVKLRCLKALSILKCLSHRS
FT                 WGADRARLLQFYKAFVRPRLEYGCQVYGSARPSYLKILDAVHHEGIRLATG
FT                 AYRTSPVLSLCAEAGEPPLSIRRLLLVARLAYRSLSAPHTLLSLSVAQQPN
FT                 QRLFHNRPQATRPFGIRAQESLELLQVQGIKVQRQGWSRGSPWLLHRPTLI
FT                 LDLTAFKKPCTSDSFYKSRFLEILNHHADFIIVYTDGSKQGDRLGCSVVFP
FT                 DSVLRIGLPKQFSVYYAELFAILRALEQIKRHQGMKFLICSDSHSALLAVD
FT                 QMYPADRMVQDIQDALLALQRHHKEIIFCWVPGHIGIQGNELADAAAKEAC
FT                 SLPPAVRCSVPLKAVTSFVTRTTMALWEDQWLDVADNKLRAVKSSVRPWRT
FT                 SFRPRRADEVALTRLRIGHCPLTHGFLLRSEEPPECGRCRTQLSIRHILTE
FT                 CVLFAGIRANLGLSQDLKSILGDDEASVDRVLRFCTMSGLLPKILGVRF"
XX
SQ   Sequence 5598 BP; 1368 A; 1416 C; 1388 G; 1426 T; 0 other;
     cccctcaggg gctcagcatt aacttgttga gtacgggctt ggcgaccccg gggtcctgag        60
     ctggggactt gtaagtgccg ctagtcctct agaccgtaag ccctgggcat gcttcagtaa       120
     ccaccgtgtg gcgcagcggt ggaacgtcgt gtgttgcagg gagcggggat ctcggcttta       180
     ccgcccggat cgcgaggatg gaaaaacctc tataaaaaaa ccccaaggtg tgctgcgggc       240
     ttacccaggc aagcggggct ctgcctgggt ggaccgtccc ttccctagct gctcgtggga       300
     ccgaaatgga ccatttgagt aatttaaacc ccggcgggat gggtgtacca tccgggagta       360
     ctcacaccca caaaactaag cgtatgaggg aggctagtcc tcctgagaaa atattagtca       420
     acagtaacag ggctcaagga gtcattaatc ataatgtatt tttagtagtg aagaggacag       480
     agggtacatt tgagaagata tctccgtttt tcatcaataa agggttagag ggtcttgcag       540
     gtaccttaaa atcaattaag aggctgcgca atggttctct ctcgttgaga ccaaccgggc       600
     aacgcaggtg gatctgctca tgaagtcctc gaaactgggt gactatgaaa tagtggttga       660
     gttgcacaac tccctcaact cgagcaaagg tgtggtcacg tgtcgtgata ttatggactt       720
     ggacactgct gagcttaagg aagaatgggc atcacagggc atcatagatg tggaacagag       780
     aatcagaaga accaatggag tcgtcgagaa aactgccacc ttcattgtga catttaattc       840
     tccgacccta ccagcacaca ttatggctgg gttcctccgt cttaaggtta ggccatacat       900
     tccgaaccct atgaggtgct ataagtgcca gcgtttcggt cacacaactc agaattgcgg       960
     tggtgaacca acctgtggga agtgtgctca ggcagcccat gagtctgggg ctgactgtcc      1020
     atctccagca ctctgcatca actgctctgg tagtcatcct gtctggagcc gagagtgccc      1080
     tgtttttgcg gaggaacgca aaatacaaga aattaaggtg acgaagcgga tcccatacgt      1140
     agaggctaaa aaggaataca aggcgaccac accacctgta tttcctattt cctatgcgtc      1200
     gttggtccag aagtccatac cgacagttga tgcttccacg cagaccccac cttttgttcc      1260
     catatccacg acaagcacgt gtacctgcac ctgtacctgc cagagtcaga ccagcaaaga      1320
     cgtggcgatt caagcagatc ccacagtaca atgagaagag gtacctacag taataattga      1380
     gaaggcaccc caaaaacagg gtgctcccca aacccccctt tcttcaacat cttcaaagaa      1440
     gaagcgatct aagaaagctt cacaacgtcc agtcgagtca cttccgcagg ccccatcgga      1500
     cgtcgttatg gcggccttaa ctgatgacga ggacatcatt atggagctag atgcctcgtc      1560
     gccagaacca ggcagcccat cagatacccc tcgctcacag agtgcctcac catctcggca      1620
     caagcagagg ggtaaactag acccacatcg ataacatggc aaccatactc cagtggaata      1680
     tgaatgggtt caggactcgt ctgggggaat tgcagctcct cgtgagagat aggcccttct      1740
     gtatatccct ccaagagacg cattttaagc agggtgatac gcctgtactt aaaggatatc      1800
     acctttacag gaaagacaac cttgctggtg acagggcgca aggtggggtg gcagtgtttg      1860
     tcagggacac atttcactcc tcacctgtgc ccttaaccac gacactacaa gcagttgccg      1920
     ttcgtgtact ggcccatctt agtatgacag tgtgctccct ttacttgcca cctggtgagt      1980
     atgttgatag tcatctccta acagacctta ttagagaact cccacgtccc tttcttctgt      2040
     taggtgattt caatgcacac aatcgactat ggggctctaa caatgattgc cccaggggac      2100
     gaatggttga gaatgtaatt cactcccctg atgtcatact gctgaacaca ggcaagccta      2160
     cacatttcag cactgctaca ggttcgtctt ctgctataga cctctccctc tgctcgccta      2220
     ctctatcaca tactgtccaa tgggatgtgg acgaagacct ccatggtagc gaccactacc      2280
     caatctggtt aaatctgcca gctggaatgg atagagatgt aaagccacct agatggctcg      2340
     tcgataaagc cgactggggc tttatacaca gttggctgtc ttcgagcggt ttgactgtgt      2400
     ccaggattgg gtggatcaca ttacatcagt gattcacaat gccgccgatg catccattcc      2460
     taaatccaag ccaacactta ggaggccggc tgtcccttgg tggaatgatg attgtcgctc      2520
     tgcgatcagg gccagaaggg cagcattgcg acgattccat cggtgcccta ctgaggcgaa      2580
     tctggcgaac tttcgagtcg cgagggcacg ggcgagatgg gttattagag aaagtaagca      2640
     gaggtcttgg caagagttcc tgaactccat caacaggtcc acgtcagcaa gtagagtatg      2700
     ggaagccatt cggaggatct cgaggcggaa ttcccgaccg ccgatagcag ctgtacaagg      2760
     gcagggacgt ctcctaacat catcaagaga cattgcccaa gtaatggctg aatcttacga      2820
     gagcattaca tccgattcca gccaagaccc agccttctgt cgataccggg cgatacagga      2880
     gagggttggt tttgacttcc gttcttccaa tgtggaagat tacaaccagc ctttctcact      2940
     gtgggagctg gagtctgcac tgtccgtcac tcgtgatact gcacctggtc acgacgagat      3000
     tacgtacagc atgctacgac atttaaacac acgctcaaag gaggtcctct tacatctttt      3060
     taatgaaatt tggattacgg ggaactttcc atgttcttgg aaagaatcca ttttaattcc      3120
     aattttaaaa ccggggaaag atcgcaccga cccaggtagt tatcggagca ttagcctcac      3180
     gagttgcatt ggtaagacgt tggagcgtat ggtcaaccgg cgcttagtat gggtcctcga      3240
     aaggagatcc ttacttagcc gctctcaatg cgggttcagg aggtaccact ctacactgga      3300
     taacctcacc ctgcttgaaa gtgcgatcca acaagctttc ttacggaagc aacacctaat      3360
     cggtgttttc tttgacctgg aaaaggcgta tgatactacc tggcgacgcc ttgttgtaca      3420
     gcagctttac gagtggggtt ttcgtggacg tttgcccact tttatccgat ctttcctctc      3480
     tgacaggtat tttagataca aggttgggag tgccttgtct gaccgtttta aacaagagaa      3540
     tggtgtcccg caagggagtg ttttaagcgt aacggcattc gccatagcca ttaacagcat      3600
     tacatccacc gtgcgaccgc ctgtacagtg ttccttgttc gtggacgact tctccatctt      3660
     ctgtgcgtcc tcctccattg caacggcagc tcgtcaattg catttgacga tcaggcggtt      3720
     ggaggaatgg tgtaacacca ctggtttcaa gttttccttg gagaaaactg tctgtgtgga      3780
     ttttaatcac tcccgttccc tttttaatac acctgtttta aaactaggag acactgttct      3840
     cacctttcag gacaaggtga aatatcttgg cctcactttc gacgagaggc tgacgtggtt      3900
     gccgcacctt aaagaggtca aactgcgatg cctcaaggct ctaagtatcc taaaatgtct      3960
     tagtcatcgg tcttggggtg ccgacagggc acgtctgctc cagttctata aagctttcgt      4020
     gcggcccaga ctggaatatg gctgccaggt ctatggatcg gccaggcctt cgtacctgaa      4080
     aatactggat gcagtacacc acgaaggtat caggctggcg actggtgcgt atcgcacaag      4140
     tccagtactt agcctgtgtg cagaagctgg tgagcccccg ctctctattc gccgtcttct      4200
     gctcgtggca cgcctggcgt acaggtctct gtcagctccg cacacgttac tttctctcag      4260
     tgttgcacag cagcccaacc aacgtttgtt ccacaaccgc ccacaggcta cgagaccgtt      4320
     tgggattcga gcacaggaga gccttgagtt gctgcaggtg cagggcatca aggttcaacg      4380
     ccaggggtgg agtaggggtt ctccctggct ccttcatagg cctacattga ttttagatct      4440
     gactgctttt aagaagcctt gtacctcgga cagtttttat aaaagtagat ttttggagat      4500
     tttaaaccac catgcagatt ttattattgt ctatacagat ggatccaagc agggagatcg      4560
     tctcggctgc tccgttgtgt tccctgactc tgtccttcgg atagggctcc caaaacagtt      4620
     ttccgtttac tatgcggaac tgttcgctat cctgagggca ctagaacaga tcaaaaggca      4680
     tcaaggtatg aagttcctga tctgctcaga ctcccacagc gccctcctcg ctgtcgacca      4740
     aatgtatccg gcagatcgga tggtgcagga catacaggac gctctccttg cattgcaacg      4800
     acaccacaag gagataatct tctgttgggt tcctgggcac atagggatcc agggaaatga      4860
     gctggccgat gcagcagcta aagaggcttg ttctctcccc cctgccgtac gctgttccgt      4920
     cccactgaaa gccgtcacct cctttgtgac acgcacaacc atggcgttgt gggaggatca      4980
     gtggctggat gtggcggaca ataaactacg tgcagtaaaa tcctcagtcc gcccatggcg      5040
     tacgtccttc cgccctcgac gagctgatga agtcgccctc actcgtcttc gaataggaca      5100
     ttgcccgctg acacatggtt ttcttttacg cagtgaagaa ccgccggagt gtggcagatg      5160
     taggacacaa ctgtcaatac gacatatttt aacagaatgc gttttatttg ctggtatcag      5220
     ggcaaatttg ggtctctcac aggacctgaa atctatttta ggtgacgatg aggcgtctgt      5280
     ggatcgtgtc ctaagatttt gtactatgtc tggacttctt cccaaaatac tgggtgtgcg      5340
     attttaatgt gtgtcagagt ggctcggtca ccctttattt ttaagtagtc accgggccac      5400
     atacatctgt caatgtttta tcctcagttt tagtcctttt aaagttgttt taagctatcc      5460
     ctacaactgt aggtgtgctt ttatatttcg caagtccatc cgacatgcgt catttttctt      5520
     ccatccgttt aagtttgagc acgggcgctg atgacctcga tgttgagcgc cctatatcac      5580
     caatcaatca atcaatca                                                    5598
//
ID   Nimb-26_LMi repbase;    DNA;    INV; 5689 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5689
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 204-204 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(433..1581,1425..1814,1818..2591,2363..3274,
FT                 3043..3723,3594..4352,4356..4490,4494..4658,
FT                 4662..4862,4866..5201)
FT                 /product="Nimb-26_LMi_1p"
FT                 /translation="MGVPLGGTNTHSKKRARLGSPPDTGLCNMSMLKSNRA
FT                 HSAVQNVFLVIKRKEGSFEKISPFYIQKGLEGIAGDLKSVKRLRNGTLLVE
FT                 TSSSQQAVNLRNAKCLGEYEIETEMHSTLNYSKGVVSCRDLVDIPNEELKE
FT                 EWASEGIVDVQNITKRVDGGLVKSESFILTFNSPKLPEYVKAGFLRLKVRP
FT                 YVPNPMRCFKCQRFGHTTLACKGEATCGKCGKAAHEGAECTPPAKCVNCSG
FT                 EHPVWSRDCTVYLEEKKVQEIKTTKRISYGEAKKIFKAMQPPSFVTSFAAV
FT                 VQKPVPKVDVSTQTDVASVGTNTCTCECTCKAAVVXEPELPHAHQKKLLXS
FT                 TLQSFCHPPRQRPLARPWHLQSQRLFRRSSLTFPLLLSXTTATRTSEKATG
FT                 VNITELLSPSPAEAIGQALAPSKPEAIPKVITDLSTPAVTNIKVAKPKKAP
FT                 GKSQEQAKAGNKPSDYIEVIIPDLPSDSAPELMELDVPQGQTSRPKTEPPA
FT                 RSVSPTKRKERVKIQPPRWLPYCSGTAGFRTHVEELRLLTRDRPMCVCLQE
FT                 TCFKETDSPELRGYFLYRKDDLTGVRAKGGVAIFVNATYHSSPVSLTTGLQ
FT                 AVAVSVYLRHRLTICSLYLPPHDALDEDALRDLLTQLPQPFILCGDFNAHN
FT                 VLWGSANTCPRGRAIERILLSSSAHLLNTGQSTHFCAATGSFSAIDLSLSS
FT                 PALAHSAQWEVAMTYMAVTTSPSGFICQTQWYPPEPHHDGCFVRQTGPCSA
FT                 NWLNLNNVIASRNGWTILHXSLALFSSPCPLCSMGSGDDLHGSDHFPLWIH
FT                 LPDTVVPARTPPRWVLRQADWTLFSQLAEFEQRDSVQEWVDHITQXIHRAA
FT                 EASIPQSTGQLQRHPVPWWTEECRSAIRARRAALRKFKCRPTAENLAAFRL
FT                 ARAKCRKVIRESKKRSWQHFLNSVNRSTPSTKVWETIRRISGRGGRCPVAA
FT                 VMANGTLHTDPRDIAQTMAEYFATVTSTAQQDPAFQRHRMGAEKGSLDFRS
FT                 TTAEEYNCPFSMWELDSACLQLVIRALDMTGYITVCYSTLQNGTEKSSSHF
FT                 LMSFGRQVIFPTHGVKQFEGQFGLQVHYCRRIQLPFLHVGARFCLSAARDT
FT                 CPGHDRIHYSMLQHLTERNREILLSLFNVVWASGHFPDSWREAVLVPILKP
FT                 GKDRTSPSSYRSIALTSCVGKTLERMVNRRLVWMLESRQLLSRFQCGFRKY
FT                 RSTFDNLAFLEAAIQQAFLRRQHLLGIFFDIERAYDTTWRHLILRQLHEWG
FT                 FRGAFPFLLCPFFLHAILGIESVTCSRIVLSKRTVFLRVAFMGFSWSLPLF
FT                 IVSFLSPRYFRYRVGDVLSDRFEQENGVPQGSVLSVTLFAIAINSLTSVVK
FT                 SPVQCSLFVDDFSIFCSSSSLATTTRQLQLTLRRLDDWAKKSGFKFSTEKS
FT                 VCVLFNRSRSILNLPELRMRDTVLHFKETVRFLGLIFDSKLTWLPHLKDLK
FT                 KRCLKALSILKCLSHNSWGADRTCLLRFYRAFVRSRLDYGCTVYGSARPSY
FT                 LKMLDVVHHEGIRLATGAFRTSPIPSLCAEAAEPPLSIRQLLLGRQGYKML
FT                 STPHAPAYHSVARPPMAGCFILGRGQHDPLGFARIVSHRWVYLILMFTSGL
FT                 EQISSLAPSEAQHYFRLGSFKKGCTPDFTYRLNFSKFIGITILRWSTPMVQ
FT                 AGDSLGCSIVFPTMLPGFASHSLFCLHSRASRDLSIRNAACSEHTVSYLLR
FT                 FTRTAITDSLYPDEKIHSSYRTNCTPSSGGVSRCHSAGSWHVGIRGNEVAD
FT                 GLQRRPAATTTYTICHSPAGCPLCGSAEVLSAVGRHVAAVTGNKLRSVKPT
FT                 VRRGNLLPVTDA"
XX
SQ   Sequence 5689 BP; 1359 A; 1420 C; 1429 G; 1475 T; 6 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ctggggactg gtaagcgcca ccagtcctct agacaccgta acctctgggc acgcttcagc       120
     gaccaccgtg tggcgcggcg gtggaacgtt gtgtgtacca gggaatgggg atcttggctt       180
     gaccacccgg gtcgcgagga tggataaacc tctataaaaa aaaccttcaa tcctaaggtg       240
     tgctacgtgc tgatgggatg catggctgtt gaggtggaac agtcgctagc gagcaacctc       300
     tggggatact gccgcacctc agttgtataa ggcttaccta ggcacgtggg gctctgtcta       360
     ggtggacatt tacttcccta gctgctcgtg ggaccagcat gaatatttct ttgtttttcc       420
     cctcccagtg ggatgggtgt accactgggg ggaacaaaca cccactcaaa aaagagggct       480
     cgcttaggca gtcctccaga cacaggtctc tgtaatatga gcatgttaaa gagtaacaga       540
     gcacattctg ctgtacagaa tgtgttttta gtaattaaaa gaaaagaggg aagttttgaa       600
     aagatttcgc ccttctacat ccaaaagggt ttagagggca ttgcaggaga cttgaagtcc       660
     gtgaaacggt tgmgaaatgg taccctgttg gtcgaaactt ctagttccca acaagcggta       720
     aaccttagaa atgccaagtg ccttggggag tatgagatag agacagagat gcatagtacc       780
     ctaaattaca gcaaaggtgt ggtctcttgt cgtgatcttg ttgatattcc aaatgaagaa       840
     cttaaggagg aatgggcctc tgagggaatt gtggatgtgc agaacatcac gaaaagggtg       900
     gatgggggac ttgtaaaatc agagtccttc atcctcacct ttaatagtcc gaagctgccg       960
     gagtatgtaa aagcaggatt ccttaggtta aaggtgcggc cctatgtacc caaccctatg      1020
     cgatgtttta aatgtcagcg gttcgggcat actacactag cttgtaaagg agaggccact      1080
     tgtggtaaat gtggaaaggc cgcccatgag ggagctgagt gtacgccacc tgcaaagtgt      1140
     gtcaactgct ctggggaaca tccagtctgg agcagggact gcacagtgta tttggaggag      1200
     aaaaaagtgc aggaaatcaa aaccaccaag cgaatttcct acggtgaggc taaaaagatc      1260
     tttaaggcca tgcagcctcc ttcctttgtc acgtcctttg ctgctgttgt mcaaaagcca      1320
     gttcccaaag ttgatgtctc cacccagacg gacgtcgcta gtgtcggtac caacacctgt      1380
     acctgtgagt gcacctgcaa ggctgcagtt gttmcagaac ctgaactgcc acacgcacat      1440
     cagaaaaagc tactggwgtc aacattacag agcttttgtc accctccccg gcagaggcca      1500
     ttggccaggc cctggcacct tcaaagccag aggctattcc gaaggtcatc actgaccttt      1560
     ccactcctgc tgtcackaac ataaaggttg caaagccgaa aaaggcacca gggaaaagtc      1620
     aagaacaggc taaagcaggc aataaaccat ctgattacat agaggtcatt atacctgacc      1680
     tcccttctga ctctgctcca gagcttatgg agctggatgt ccctcagggg caaacatcac      1740
     gccccaagac tgaacctcca gccaggtcag tctcccccac taaacggaaa gagagagtca      1800
     agatacagcc tccgtgaaga tggctcccat actgcagtgg aactgcaggg tttaggaccc      1860
     atgtggagga attgcggttg ttgactcggg atagacctat gtgtgtctgt cttcaagaga      1920
     cttgcttcaa agaaacagac tcccccgagt tacgcggata tttcctctac agaaaggatg      1980
     acctaactgg tgtgagagct aaaggtgggg tggctatttt cgtcaatgcc acctaccact      2040
     cctcacctgt ctcgctcact acaggcctgc aagcagtcgc ggtgtctgtg tatttgcggc      2100
     accgtttgac aatatgctca ctttacctgc ccccgcatga tgcactcgat gaggatgctc      2160
     tccgtgatct tcttactcag ctcccccagc cattcatcct gtgtggtgat tttaacgcac      2220
     acaatgtgct ttggggctct gcaaatacct gccccagggg tagagcaatt gagaggattc      2280
     ttttgtcgtc cagtgcacat ttgctaaata caggccagag cacacacttc tgtgctgcga      2340
     cagggtcatt ctctgctatt gatctctcgc tctcttctcc agcccttgcc cactctgctc      2400
     aatgggaagt ggcgatgacc tacatggcag tgaccacttc cccctctgga ttcatctgcc      2460
     agacacagtg gtacccgcca gaaccccacc acgatgggtg cttcgtcagg cagactggac      2520
     cttgttcagc caactggctg aatttgaaca acgtgatagc gtccaggaat gggtggacca      2580
     tattacacaa stgatccatc gcgctgctga agcatccatt ccccagtcca cgggtcaatt      2640
     acaacggcac cctgtccctt ggtggactga agaatgccgc tctgcaatac gggcgagacg      2700
     agcggctctg cgaaaattca agtgccggcc cactgcagag aatcttgcag cctttcggtt      2760
     agcgagggca aaatgtcgca aagttataag agagagtaag aagagatcat ggcagcactt      2820
     cctgaattcc gtcaatcgtt ccacacccag cactaaagta tgggagacca taaggaggat      2880
     atctggaaga ggaggacggt gcccagtagc agctgtaatg gcgaatggca ctctccacac      2940
     cgatccacga gacatagcgc agactatggc ggagtacttc gccactgtaa cttccactgc      3000
     ccagcaggat cctgctttcc agcgccacag gatgggtgct gagaagggca gtttggactt      3060
     caggtccact actgcagaag aatacaactg ccctttctcc atgtgggagc tagattctgc      3120
     ttgtctgcag ctcgtgatac gtgccctgga catgacagga tacattacag tatgctacag      3180
     caccttacag aacggaacag agaaatcctc ctctcacttt ttaatgtcgt ttgggcgtca      3240
     ggtcattttc ccgactcatg gcgtgaagca gttttagttc ctattttaaa accagggaag      3300
     gaccgtacga gcccgagtag ttatcgtagc atagccctca ctagctgcgt gggaaagacc      3360
     ttagaacgga tggtcaaccg ccgccttgtc tggatgttag aatccaggca actccttagt      3420
     cgttttcagt gtgggttcag gaaatatcga tccacctttg ataacctggc cttcctggaa      3480
     gcggctatac aacaggcttt cctgcgccgg cagcaccttt tgggtatctt ttttgacatc      3540
     gaacgagcct acgatactac ttggaggcat cttatcctca ggcagctcca tgaatggggt      3600
     tttcgtggag ccttcccctt tttattgtgt cctttctttc tccacgctat tttaggtatc      3660
     gagtcggtga cgtgctctcg gatcgttttg agcaagagaa cggtgttcct cagggtagcg      3720
     ttttaagtgt gactttgttt gccatagcaa ttaacagtct tacgtccgtt gttaaaagtc      3780
     ctgtccagtg ttcattattt gttgatgact tctcgatctt ttgctcttct tctagccttg      3840
     caacgacaac tcgtcagttg caactcactc ttcgacgatt ggatgactgg gcgaagaaga      3900
     gtggttttaa attttcaacc gagaagtctg tgtgtgttct ttttaaccgt tcccgttcta      3960
     ttttaaactt acctgaactg aggatgaggg acactgtcct acattttaaa gaaacagtga      4020
     gatttctggg tctaattttt gactcaaaac tcacgtggtt gccacacctc aaggacctga      4080
     agaaacgttg cctcaaggca ctgagtattt taaaatgtct tagccacaat tcgtggggtg      4140
     cagatagaac ctgtctgctt cggttttatc gggccttcgt gcgatctcgc cttgattatg      4200
     gatgcacagt gtatggctct gccagaccct cttatttgaa gatgctggac gtggtgcacc      4260
     acgaagggat tcggctggct actggggcct ttagaactag ccccattccg agcctctgtg      4320
     ctgaggctgc tgagccgcca ctgtccatca ggtgacaact tctcctgggg cgccagggat      4380
     acaaaatgtt gtcaacgcca cacgcacctg cataccatag tgtagctcgg cctcctatgg      4440
     cgggttgttt catactcggc agagggcaac acgacccttt gggattcgca tgaaggattg      4500
     tctctcacag atgggtgtac ctgattttaa tgtttacatc agggttggag cagatttcct      4560
     ccttggctcc ttcggaggcc caacattatt ttagacttgg cagttttaag aaaggttgca      4620
     ctcctgattt tacatatcgt ctgaattttt caaaatttta gataggcatc acgattttac      4680
     ggtggtctac accgatggtt caagctgggg attccctcgg ctgttccata gtgttcccga      4740
     ccatgttacc aggattcgcc tcccacagcc ttttctgtct tcacagcaga gcttcacgcg      4800
     atttgagcat caggaatgcg gcgtgttcgg agcacacggt ttcttatctg ctccgattca      4860
     cttagcgcac tgcaatcact gacagcctgt acccagatga gaagatccac agctcataca      4920
     ggaccaactg tactccctcc agcggcgggg taagcaggtg tcattctgct gggtcctggc      4980
     atgtgggaat tcggggaaat gaagttgctg atgggctgca aaggcggcct gcagcgacca      5040
     caacatatac aatctgccat tcccctgcag gatgtcctct ctgtggttcg gcagaagtgc      5100
     tctcagctgt gggaagacac gtggctgcag tgacaggtaa taagctgcgg tcggtgaaac      5160
     caactgtccg ccgtgggaac ctcctgccag tcacagacgc atgaagtgac ctgacgcggc      5220
     tccgaatcgg gcactgccca ttaacgcaca agtttttatt gtcaagaaga tcctcctttt      5280
     tgtgatgcct gtggcgtgca acttacatag ccacatttta atgagtgcat ttatatcgtg      5340
     ctgcgagggc agaagccaat cttagtggtg atctgccctc cattttagct gatgacgagg      5400
     cgagtgtgaa aaggttttaa gattttgtga agcgtctgca ctctggccta agcttttagg      5460
     ttggagattt tagtttgatg cgagtggctg gctgagttcc tccttgtgtg tcagccagcc      5520
     gtgctaatct acctagtcct ctcttggtaa ctgtgatatg aatgttttta tggcctcatt      5580
     taactagctt gtctcttatc ttgtttgaca ctcgtctcac tctgttttcg tccgggtgct      5640
     aaagacctcg acgtctgcgc cctgatccat aatcaccacc acaccacca                  5689
//
ID   Nimb-27_LMi repbase;    DNA;    INV; 5961 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5961
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 205-205 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           397..1596
FT                 /product="Nimb-27_LMi_1p"
FT                 /translation="MKRANNGVAGRKTGVSKRGRTEFNAATYDPQAFPSMA
FT                 TPWEERRARQQGEAYAPRYLVCTRTDGESFTTTKPLFFVENLEDKFGEVDG
FT                 MSKMRSGAVLITTSSPAQSRALLACDKLGDVPVSITPHKSLNMVQGIIFHK
FT                 DLLLQSDDELRKNLERRGVQFIRRVYRGPKDNRVATGAFILAFEGDSLPEK
FT                 VKVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCDGNPTCRECGRASHPDAP
FT                 CVPPPVCVNCKQHHSPCSPDCTVLHKERKIMEYKTLDRLSYSEAKKKYAKL
FT                 HPASTKTSYATVASPLPLPSLLPPSTASSSIVGPSAKPPTSAPMVFGGTSP
FT                 PLPPRSLLWEXHHLHLWGPQSPPLSQRLNSHLWLLSRGRAPSDPFLPRLLL
FT                 WIPVGG"
FT   CDS           join(1893..2501,2428..3807,3645..5156,5003..5617)
FT                 /product="Nimb-27_LMi_2p"
FT                 /translation="TLLRRRKQHVPATRRLLILQWNCGGFFRHLPELQQLL
FT                 CRFPAFCVALQETWFPAQRTPALRGYRGYYKNRSTYDRVSGGVCVYVLTSV
FT                 PSTPVPLHTTLEAVAVRIRTVQDITICSVYLSPDEVISTADLSALVTQLPT
FT                 PFIILGDFNAHHPLWGGTQISGRGRDVETLLTQLDVCLLNTGAPTHFSVAH
FT                 GTWHILGXRPLTLTLVLPHTSVWHMAHGTFSAIDLSLCSPRLLPHLSWSVH
FT                 DDLCGSDHFPVLLSLLQPQPAANLPRWSLRRADWTAYTSAAVVSAQLPTEV
FT                 DAAVHQLTAAIVSAAEETIPCSPGTLRRKSVPWWTQEIAEAIRDRRRALQR
FT                 HRRHPCVEHLITFKRLRARARRLIQQSKQDCWERYVATIGSRTSASRVWSQ
FT                 IRRLFGYRPTVGIPCLLIQGTVCTDPSATAEHMAVHFARISATEAYSVGFR
FT                 TLKERVERKPLSFRTRRRETYNAPFSEWEFQSALAACPNTSPGPDRVHSQF
FT                 LQHLSADFQHHLLALFNRVWVEGVFPSQWRDSVIIPVLKPGADPQVANSYR
FT                 PISLTNVMCKLLERMVSRRLMWILEDRGLLASQQGAFRQGRSTLDNLVSLE
FT                 SAIRTAFARREHLVASSSTFGRRTTPPGVVIFWQHCTNGAYGVLFPSSFRT
FT                 SSPSVLSVSGSVPVAPRCVFFDLRKAYDTTWRRHILATLHEWGLRGALPIF
FT                 IQNFLSLRTFRVRIGTCLSSPHIQENGVPQGSVLSVPLFLVAINGLAAAVG
FT                 ASVSCSLFADDFCLYYSSTSISVTERRLQGAIRKAQSWAFAHGFQFTASKT
FT                 SVMHFCRRRTAHLHPELYLADELLQVEETHRFLGMLFDARLTWTPHLRQLK
FT                 QQCWRHLNVLRCLSHTDWGAARTTLLQLYKALVQSRLDYGSIIYDSAAPSA
FT                 LHILDPILHCGVRLSTGAFRTSPVTSLLVEAGIPPLRFRRQHLLASYTAHV
FT                 HATPNHPNRRLLFPSFVPPSPRRRPRSGLPIAARVRSLLSSLESLPLPPSF
FT                 HCPPQSPPWSRPHLRLYLDLACHSKASVPPATLRRQFAALLDSFRGAETIY
FT                 TDGSVVDGRSGFAYVHGDHIERHSLPRGTSIFAAELVAIYHALEHLHSSPG
FT                 ESFVICSDSLSGLRALDQCFSKHLWCRVSKTLLPLSIGLVAQWFLFGPQGT
FT                 SAFLAMNVLPEWLASTRPVFQQTPLVQSIQDSVASLNRSGRSVVFVWTPGH
FT                 IGIPGNERVDRLAKQATTSRPLEIGLVETDLRWTLHRKVRDAWSSEWSALS
FT                 AQNKLRTIKPSTATWKTSLRPNRRDSVVLCRLRIGHTWLTHGYLLRREPPP
FT                 MCRCGVALTVVHLLMDCNVLAPLRQSFNLPPTLSLVLGDDASTAESVLRFI
FT                 RAAGFYHSI"
XX
SQ   Sequence 5961 BP; 1227 A; 1802 C; 1463 G; 1467 T; 2 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ctgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aacctcaatc tcaaggtgtg       240
     ctacgtgccg aggagatgca tggctgttga ggttgaacag tcgctagcga gcaacctctg       300
     aggaacctgc cgcacctcag ttgtataagg cttacccagg caagcggggc tctgcctggg       360
     tggaccttta gttccctagc tgctcgtggg acgagaatga aacgagcaaa taatggcgtt       420
     gccggacgca aaaccggcgt ctctaagcgt gggcgaaccg aatttaatgc tgcgacatat       480
     gacccccaag cgtttccttc catggccaca ccatgggaag aacgcagggc ccgtcaacaa       540
     ggtgaggctt atgccccccg ttatctggtg tgtactagga cagacggcga atcgtttaca       600
     accacgaagc ctctgttttt tgtggaaaac ctcgaggata agtttgggga agtggatggc       660
     atgtctaaga tgagatctgg ggctgtactg ataacgacat cgtccccagc ccagtcacgg       720
     gcactgcttg cctgtgacaa gctgggtgac gtccccgtta gcatcactcc ccataagagc       780
     ttgaacatgg tccagggaat tatatttcac aaggaccttt tattgcagtc tgacgacgag       840
     ttacggaaga acctagagag gcgaggagtt cagttcatcc ggcgcgttta taggggtccg       900
     aaggacaata gggtagccac cggtgcgttc atcttggctt tcgaaggcga ttcattgccg       960
     gagaaagtca aggtaatgat ctaccggtgt gacgtaaaac cctacgttcc tccccctatg      1020
     cgctgcttca aatgctggag gtttgggcac atgtcctccc gatgtgatgg taaccctaca      1080
     tgtcgggagt gcggacgtgc ctcacaccca gacgcccctt gtgtccctcc tccagtatgt      1140
     gttaactgca agcagcatca ctctccttgt tcgccagact gcacggttct tcataaggaa      1200
     cgaaaaatca tggaatataa gaccctggac cggttgtcat actcagaggc caagaaaaag      1260
     tatgccaaac tccatcctgc gagcacgaaa acatcatatg ccacagttgc atcaccactg      1320
     cctctgccat ctctgctacc accttccact gcctcgtctt ccatagtggg cccttcggcc      1380
     aaaccgccca catctgcccc catggtgttt gggggtacct cacctccgtt gcccccaagg      1440
     tccctacttt gggagcamca ccacctccac ctgtggggcc ctcagtcccc acccctgagc      1500
     cagagactca acagccatct ctggctcctc tcgcgaggaa gggctccctc ggatcccttc      1560
     cttccaaggc ttctcctgtg gataccagta ggtggctgaa agagccacct actgctggtc      1620
     gcagggcctc acgggcgtcc tcagtccctg aggatgggtc cgcaaagccc tcccagcatg      1680
     agaagcctaa ggacctcgcg agaagaaaaa aaaagaacaa gagtaaaacc aaagattccg      1740
     tggtggctac cgtgccacca aaacattcct cttcatctga ggacgaaata gagatcctcg      1800
     cgtccccaaa gacttggcca ttgccgagtc tttggaagct atggacgttg aggctctgcc      1860
     tcaaaaatcg gcgacagcag aagatactgt gaaccctact gcgccgtcga aagcagcatg      1920
     tcccagcgac caggaggctc ttgatcctcc aatggaactg tggcggcttt ttccgccatc      1980
     tgccagagtt gcagcaattg ttgtgccgct tcccagcgtt ttgtgtagcc ctgcaggaaa      2040
     cctggtttcc tgctcaaagg accccagccc ttcgtggcta tcggggctat tacaaaaacc      2100
     gctcgaccta tgacagggta tccgggggtg tctgtgtgta cgtcctcacc tctgtaccca      2160
     gtactcccgt gcctctccac acaacgctcg aggcagtggc ggtcaggatc cgtacagttc      2220
     aggacatcac catctgctct gtctacctct ccccagatga ggttatttct accgctgacc      2280
     tcagtgcatt ggttactcaa cttcccacac catttatcat tctgggggac ttcaatgccc      2340
     accacccttt gtggggtggc acccagatat cgggccgtgg tagggatgtc gagacactct      2400
     taacacagct ggatgtatgc ctcctgaaca ctggtgctcc cacacacttc agtgtggcac      2460
     atggcacatg gcacattctc ggcmatagac ctctcacttt gtagcccacg ccttcttccc      2520
     cacctcagtt ggagtgtaca tgatgaccta tgtggcagcg accactttcc tgtcctcctc      2580
     tctctgcttc agcctcaacc agcagccaac ctgccccgat ggtctctccg cagagccgac      2640
     tggacagctt atacctcggc tgctgtggtt tctgctcaac ttcccactga agttgatgca      2700
     gcagtccacc agctcactgc ggccattgtt tccgctgccg aggaaactat tccatgctcc      2760
     ccaggtacgt taaggcgcaa gtcggtgcct tggtggacgc aagagatcgc tgaggccatc      2820
     cgggatcgtc gacgagcact gcagcgccac cgacgccacc catgtgttga gcacctgata      2880
     actttcaaac gtcttcgggc tcgtgctcga cgactgatcc agcagagtaa acaggactgt      2940
     tgggagcgat atgttgccac tatcggttct cgcacctccg cctctcgggt gtggtcgcaa      3000
     atccggcgac tctttggata ccgcccaact gtaggaatcc cttgtctcct cattcaggga      3060
     accgtctgta cagaccccag tgctactgcc gaacatatgg cagtgcattt cgctcgtatt      3120
     tctgcgacag aagcatacag tgtgggcttc cgcaccctta aagagcgagt cgagcgaaag      3180
     ccgttatcgt tccgcacgcg ccgccgggag acatacaacg caccgtttag tgagtgggag      3240
     ttccagagtg cccttgctgc atgccccaac acctctccag gaccagaccg cgttcatagc      3300
     caattccttc aacacttgtc tgcggatttt cagcaccacc tgctcgccct gttcaaccgt      3360
     gtctgggttg aaggtgtttt cccgtctcaa tggcgggaca gcgtcatcat cccagtgttg      3420
     aaaccaggag ctgatccgca ggtggctaat agttaccgcc ctattagtct gaccaacgtc      3480
     atgtgcaagc tcctcgaacg tatggtcagc cggcggctca tgtggatcct tgaagaccgg      3540
     ggcctcttgg cctcgcagca gggggccttc cgtcagggtc gatccactct cgacaaccta      3600
     gtgtccctag agtcagccat ccgtacagcc ttcgctcggc gtgagcacct cgttgcgtct      3660
     tcttcgacct tcggaaggcg tacgacacca cctggcgtcg tcatattctg gcaacattgc      3720
     acgaatgggg cttacggggt gctcttccca tcttcattca gaacttcctc tccctccgta      3780
     ctttccgtgt caggatcggt acctgtttga gctcccctca cattcaggag aacggtgtcc      3840
     cgcagggctc cgtcctaagt gtccccctct ttttggtggc aattaacggt ctagcagcag      3900
     cagtaggtgc atctgtctct tgctccctat ttgctgatga cttctgccta tattatagct      3960
     ccacaagcat cagtgtcact gaacgacggc tacagggtgc aatccgaaag gcgcaatctt      4020
     gggcatttgc ccacggtttt caattcaccg catccaagac cagcgtgatg cacttttgtc      4080
     gccgtcggac ggctcatctg catccggagc tctatcttgc tgacgaactg cttcaggtag      4140
     aggagacgca ccgctttctg ggcatgcttt tcgatgcccg ccttacttgg acgccccacc      4200
     ttcgtcagct caaacaacag tgctggcgac acctcaacgt cctccgctgc ctcagccaca      4260
     ctgattgggg ggctgcacga acgactctct tgcagctgta caaggcctta gtccagtccc      4320
     gcctcgacta cggaagcata atatacgact cggcagcgcc ttcagctctg cacatacttg      4380
     acccgatact ccattgtggc gttaggctgt caacgggagc ctttcgcact agcccggtga      4440
     cgagccttct tgtcgaagca ggaattcctc ctctccgatt ccgtcgccaa cacttgctag      4500
     cgtcatacac cgcccacgtt cacgccacgc caaatcatcc gaaccgcagg ctcctctttc      4560
     cgtcttttgt tcccccttcc ccacgacggc gacccaggtc cggtcttccg attgcggccc      4620
     gggttcgctc tctcctctct tccctcgagt cccttcccct ccctccttcc ttccactgtc      4680
     caccccaatc gcctccttgg tctcgccccc acctgcggct ctacttggac ttggcatgtc      4740
     attccaaggc ttcagttcca ccagcgacac ttcgtcgcca gtttgcggca cttctggact      4800
     cgttccgtgg tgcggaaacg atctacactg acggttctgt ggtggacggc cgatctggat      4860
     ttgcttacgt ccacggagac cacattgaac gccattccct gcctcgtggt accagtattt      4920
     tcgctgcaga gctggtcgcc atatatcatg ctctagagca cctccactca agccccgggg      4980
     agtcctttgt catctgcagt gactccctga gtggcttgcg agcactcgac cagtgtttca      5040
     gcaaacacct ttggtgcaga gtatccaaga ctctgttgcc tctctcaata ggtctggtcg      5100
     ctcagtggtt tttgtttgga ccccagggca catcggcatt cctggcaatg aacgtgtaga      5160
     tcggttggcc aaacaggcca ccacctcacg ccctcttgaa attggtctcg tggaaacgga      5220
     ccttaggtgg acgctacacc ggaaggtgcg agacgcctgg agttcggaat ggtctgcact      5280
     gagtgcgcaa aacaagcttc gcacgatcaa accatccaca gccacatgga aaacttcact      5340
     gaggcccaat cgtcgagatt ccgttgtgct atgccgtctc cgtattgggc acacttggtt      5400
     gactcacggc tatttacttc gccgtgagcc accgcccatg tgtcgctgtg gtgttgcttt      5460
     gacagtagtt catctcctga tggactgtaa cgttttagcc cccttgcggc agtcttttaa      5520
     tcttccacct accctatcct tagtgctagg ggacgatgcc tccacggctg agtctgtgct      5580
     acgttttatc cgtgcagccg gtttttacca ttccatttaa tggagggtgc tttatcctga      5640
     ctttaaaccg ttttttagtg ttttatgtct tctgactagc agatattagt gtgtgccacg      5700
     tgactggctc gtccattatt atcccagtga ccagccagcc acggatttcc gttgtcaaac      5760
     tttagtatga ttgaacgctc tgttttattt tctctatttg tgctgttggt gaaagttcat      5820
     cgttgacatg tactcctctt gggtattcat tctgtgtgtc caggtccata ctaccattgt      5880
     ttccactcca ctgcacgttc tttgttagga acaggggact gatgaccaag tagtttagtc      5940
     ccctctaaac aacaacaaca a                                                5961
//
ID   Nimb-28_LMi repbase;    DNA;    INV; 5985 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5985
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 206-206 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           398..1753
FT                 /product="Nimb-28_LMi_1p"
FT                 /translation="MKRXSKSVAGRTTGVSKRGRSEFNAAQYDPQSFPSLA
FT                 TPWEERRAKDRVEPYSPKFLVCARTDGETFSNTKPLFFVDNLEDKYGEVLG
FT                 MSKMRSGAVLIETASPAQSRALLACEKLGDVPVTITPHKSLNMVQGIIYHR
FT                 DLLLQSDDELRANLERRGVHFVRRVYRGPKDNKVATGAFILAFEGDSLPEK
FT                 VKVMIYRCDVKPYIPPPMRCFKCWKFGHMSSRCNSSSTCRECGRPSHPDAP
FT                 CAPPPICVNCGQHHPPCSPNCTMLHKERKIMEYKTMDKLSYNEAKKKFERL
FT                 HPVALKTSFATVTSSPFPSVTAAPMFVPTSVGPQGRKTASAPSMVGGSPPC
FT                 APPNTPPGGAHPPTPSGTTVPVTQPEKQQLPPAPLARKGSLGTLPSEASQS
FT                 TTEGPSPRLSDSHTLGQRAPHSTSGPDTVSEKPSQSLKPKGQREEKKKKRR
FT                 KRNLLWL"
FT   CDS           join(1925..2431,2344..4131,3990..4232,4236..4436,
FT                 4440..5081,5069..5257,5270..5449,5394..5606,
FT                 5572..5838)
FT                 /product="Nimb-28_LMi_2p"
FT                 /translation="MAYPVSNNQILQWNCGGFFSHLAELRQLLNTSPALCI
FT                 ALQETWFPPTRCPALRGYRGYYRNRTXYDRVSGGVCIFVLSSVYSESIALQ
FT                 TPLEAVAVRVKTTIDLTICSVYLPPDGVVPQHVLAALISQLPSPFLLLGDF
FT                 NAHNPLWGVLRLLAVAEMLRVYYLSSTSAFRPQPPVGGTTITGRGRDVESL
FT                 LSQLDLCILNTGVATHFSVAHGTYSAIDLSVCSPGLLPSVHWRVHDDLCGS
FT                 DHFPIFLSLPRPQSPGRLPRWALNKADWNEFTTAAKIGPPTDATIDEVTES
FT                 LTAAIISAAERTIPSSSGSPRRRTVPWWSPEIAEAIRDRRRALQRHKRHPS
FT                 LENLIAFKRLRARARLLIRRRKQECWERYVSTIGTCTSPSQVWEKIRRLYG
FT                 YQSASGVPGISMNGVVCTDPDAIAEHLAEHYARSSASVNYPPSFRTVKERE
FT                 ERKRLSFSTRRMESYNAPFSEWEFLGALAHSPDTSPGPDRIHNQMLKHLSV
FT                 QSTRNILSMFNRIWNDGVFPSQWRESIIVPVLKPGKNPCDLDSYRPISLTN
FT                 VLCKLLERMVSRRLCWVLESRGLLAPCQGGFRQGRSTTDNLVYLESCIRTA
FT                 FAQRQHLVAVFFDLRKAYDTTWRHHILQTLHEWGLRGQLPIFIRNFLAVRT
FT                 FRVQVGASRSTPHVQENGVPQGSVLSVPLFLVAINGLATAVGSSVSPSLYA
FT                 DDFCISFSSSSTQVAERRLQGAIRKAQSWALPMASSSLLRRPVLCTSVGVG
FT                 RFIHSPNFISTTTYVTGSHSEGAVLGSAHGFQFSPAKTSVMHFCRRRTVHP
FT                 QPELYLNNHLLEVVDTHRFLGLVFDSRLTWLPHIRQLKQKCWRHMFSATWA
FT                 IRPGVLIGPHCCGYTKLWCSPVSILDALPMAPHPPRHCACWTPFTTVGFAS
FT                 RRVPSAPAPTVYLRRLGSHLCGSAASNCSRPMLLMSIARQAIRTNVCFSLA
FT                 WSSVLNNGDPVRSHDRLPCPVPYVGTRVFPCPISVSGPYAYTPMVCTEATL
FT                 WLDLADRPKDSVPPEALRRQFFAVVAEYTGYDIVYTDGSLVDGRVGFAYVH
FT                 GDHAEQRSLPDGCSVYTAELVAILRALEHMRSCSGGSFLLCSDSLSSLRAL
FT                 DQCYSRSSLVKAIHETFLLDLFALISQDVCGLLWSPGHIGIPDNERADKLA
FT                 KQAVHASVLETGLPASDLQSVLRHRVVSLGRPDPSQQTQGNKGDYGCVALL
FT                 HAGLSPGLVVLCRLRIGHTWLTHGHLLRGEDPPIVAVALPPMAISSVVRTR
FT                 PLSLWLFLDGGPHFVDCRLLAALRRGFNFPAVLSEVLRNDAIMADSVLGFI
FT                 RDSGFYNSIVLFVTVVFTTLYEALLQPIVFVSLVYVLRLKVSLCCPVADPS
FT                 YFNFMVGQPRTSALSFHFLTCSVFPCDCLLSCCLLSCCLLSNLLIFY"
XX
SQ   Sequence 5985 BP; 1224 A; 1713 C; 1491 G; 1553 T; 4 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaaccctcaa tctcaaggtg       240
     tgctacgtgc cgaggagatg catggctgtt gaggttgaac agtcgctagc gagcaacctc       300
     tgaggaacct gccgcacctc agttgtataa ggcttaccca ggcaagcggg gctctgcctg       360
     ggtggacctt agttccctag ctgctcgtgg gaccamcatg aagcgakcaa gtaaaagcgt       420
     tgccggacgc acaaccggcg tctctaagcg tggtagaagt gaattcaatg ccgcacaata       480
     tgacccccaa tcgttccctt ccctagctac cccatgggag gaacgacggg cgaaagacag       540
     ggttgagcca tactccccta aatttcttgt ctgtgccaga actgatgggg aaacattcag       600
     caatactaag ccactcttct tcgtggataa cttagaagac aagtatggcg aagtcttagg       660
     gatgtctaag atgagaagcg gtgcagtcct catagaaaca gcatccccag cacagtcacg       720
     ggcacttctg gcctgtgaaa agctgggaga tgttcctgtg accatcaccc ctcacaagag       780
     tctcaatatg gttcagggga taatttacca tcgagatctc ctgctgcagt cggacgacga       840
     attacgcgcc aaccttgaac gacggggtgt ccacttcgtc aggcgcgtct atagggggcc       900
     taaggacaac aaggtagcca ccggtgcctt catcctggcc tttgagggcg attctttgcc       960
     cgaaaaggtc aaggttatga tataccggtg cgacgtaaag ccttatattc ctcctccgat      1020
     gcggtgcttc aaatgctgga aatttgggca catgtcctcc aggtgcaatt ccagctccac      1080
     ctgtcgagaa tgcgggcgtc catcccatcc ggacgctcct tgtgctcctc cgcctatttg      1140
     cgtgaactgt ggacagcacc accccccttg ctcgccaaac tgcacgatgc tccataaaga      1200
     aaggaaaatt atggagtaca aaaccatgga caaattgtca tataatgagg ccaaaaagaa      1260
     atttgagcga ctgcacccag tggcattgaa gacgtcattt gcgactgtca cgtcgtcacc      1320
     ttttccttcg gtgacggcgg cccccatgtt tgtgccaact tctgtgggcc ctcagggccg      1380
     taaaactgca tcagccccct cgatggttgg gggctctcca ccatgtgctc cccccaatac      1440
     acctcctggg ggagcacatc cccccacacc gtcggggaca acggtccccg tcactcagcc      1500
     ggagaagcaa caacttcctc cggctcctct cgctcggaag gggtcccttg ggacgctccc      1560
     ttccgaggcc tctcagagta ccacggaggg tcccagccca cggctgtcgg actcgcacac      1620
     ccttggtcaa agggctccgc actctacgtc gggccctgac accgtctctg agaagccctc      1680
     tcagtcctta aaaccgaaag gacagcgaga ggaaaagaag aagaagcgaa gaaaaaggaa      1740
     tcttctgtgg ctctaaagcc acgccttgtc acatcttccg cttctgacga cgagttggag      1800
     atccttgcat cccccaagga tctcgctctc ctggactctc cagaaccaat ggttctggat      1860
     ccagtaggta cacattcgac agcagcaggt agtgaaccta tggactaatc atccttatcc      1920
     tatcatggcc tatccagtca gcaataacca aattctccag tggaattgtg gcggtttttt      1980
     ctcccattta gcagagttac ggcagcttct caacacttca cctgcactgt gcattgccct      2040
     gcaggaaacc tggtttcccc cgacgcgatg ccctgcctta cgaggctatc ggggatatta      2100
     ccggaatcgc acagwttatg acagggtttc aggtggagtm tgtatttttg tcctttcgtc      2160
     tgtctacagt gaatctattg ccctccaaac gcctttagaa gctgtggcag tcagggtgaa      2220
     gactacaatc gacctcacca tttgcagtgt atacctgccc ccagacggcg tagtacccca      2280
     acatgtcttg gcggcgctga tttctcagct cccctcacct ttcttacttt tgggtgattt      2340
     taacgcccac aaccccctgt ggggggtact acgattactg gccgtggcag agatgttgag      2400
     agtttattat ctcagctcga cctctgcatt ttaaataccg gtgttgccac acacttcagt      2460
     gtggctcacg gcacttactc tgccattgat ctgtcggtat gtagtcctgg ccttttaccg      2520
     tctgtccact ggagagtgca tgatgacttg tgtggtagtg accacttccc aatattcctt      2580
     tcactaccac ggcctcagtc ccctggacgt ttgcccagat gggcccttaa taaggctgat      2640
     tggaacgagt ttactaccgc tgcaaagatt ggccctccaa cggatgccac catagatgag      2700
     gtgactgaaa gtctcaccgc agccattatt tctgcggctg aacgtacgat ccctagctct      2760
     tctggatccc ctcggcggag gacggtgccc tggtggtcgc cagagatcgc tgaggctatt      2820
     agggatcgca ggcgtgcact ccagcgccat aagagacacc cgtccttgga gaacctcatt      2880
     gcgttcaagc ggctccgtgc acgagcacgt cttttaatta ggcgtcgtaa gcaggagtgt      2940
     tgggaacggt acgtgtccac tattggcaca tgtacctctc catcccaggt ctgggagaaa      3000
     atcagacgcc tctatggata ccagagtgct tcaggcgtgc cagggatttc tatgaatgga      3060
     gtagtttgta cggacccgga tgcaattgct gaacatctcg ctgagcacta tgctcggagt      3120
     tctgcatctg tgaattaccc gccatctttc cgtaccgtga aagagcggga agaacggaag      3180
     cgactgtcct tctcgacccg ccgaatggaa tcctacaatg ctccattcag tgaatgggaa      3240
     ttcctcggtg cccttgcaca cagtcccgat accagccccg ggccagatcg cattcataac      3300
     cagatgctga aacacctgtc ggtgcagtct acacgaaaca tcttatccat gttcaatcgc      3360
     atctggaacg atggtgtctt cccgtcacag tggcgagaaa gtatcatcgt gccagtgctt      3420
     aagccaggta aaaacccatg cgatttggac agctaccgac ccatcagcct caccaacgtt      3480
     ctttgcaaac tgctggaacg tatggtgagc cggcggctgt gctgggtact agagtctaga      3540
     ggcctgctgg ctccatgcca gggcggtttc cgtcaaggcc gctccactac agacaacctc      3600
     gtttacttgg agtcctgtat tcgtacagcc tttgctcaac gtcaacatct tgttgcggtg      3660
     ttttttgatt tgagaaaggc atacgataca acatggagac atcacatcct tcagacgtta      3720
     catgaatggg gtcttcgagg ccagctccct atttttatcc gaaacttttt agctgtccgt      3780
     acgtttcgtg tccaagttgg tgcttctcgt agcacccctc atgtgcagga aaatggggtt      3840
     cctcagggct ctgttttgag tgtcccctta tttttagtgg ccattaacgg cttagcgaca      3900
     gcagttgggt cgtcagtatc cccctccctc tatgctgacg acttctgcat ctcttttagc      3960
     tcttccagca cccaagttgc tgaacgtagg ttacagggag ccattcggaa ggcgcagtcc      4020
     tgggctctgc ccatggcttc cagttctctc ctgcgaagac cagtgttatg cacttctgtc      4080
     ggcgtcggac ggttcatcca cagcccgaac tttatctcaa caaccaccta ttagaggtcg      4140
     ttgacactca caggttttta gggctcgtct ttgactctcg gctgacgtgg ctcccccaca      4200
     ttcgtcagct gaaacagaag tgctggcgcc actgaatgtt ctccgccacc tgggccatac      4260
     gacctggggt gctgatcggt ccacactgtt gcggatatac caagctctgg tgcagtcccg      4320
     tctcgatttt ggatgccttg cctatggctc cgcatccccc tcggcattgc gcttgctgga      4380
     ccccattcac cactgtgggg ttcgcatcgc gacgggtgcc ttccgcacca gccccgtgaa      4440
     cagtttactt gcggaggctg gggtcccacc tctgcggatc cgccgccagc aactgctcgc      4500
     ggcctatgct gctcatgtcc atagctcgcc aggccatccg aaccaacgtt tgcttttctc      4560
     tcgcatggtc gtccgtcctc aacaacggcg accccgttcg gtcacacgat cgccttccgt      4620
     gtccagtccc ttatgttgga actagagtct ttccctgtcc catctccgta tcgggcccgt      4680
     acgcgtacac ccccatggtg tgtaccgagg ccacgctctg gctggacttg gccgatagac      4740
     ccaaagactc agttcctcca gaggcactcc gccgtcagtt ctttgctgtt gttgcagagt      4800
     acactggata cgacatagtc tatacggacg gttcgttggt tgatggtcgt gttggctttg      4860
     cctatgtcca tggcgatcac gctgagcagc ggtctctgcc ggatggctgc agtgtttaca      4920
     ctgcagagct ggtggccatt ctccgtgctc ttgagcatat gcgttcctgc tcaggtgggt      4980
     cttttcttct ctgcagtgac tccctgagca gtcttcgcgc tctggaccaa tgttactcac      5040
     gttcttcttt ggtgaaggct atccatgaga cctttttgct ctgatcagtc aggacgtctg      5100
     tggtcttctt tggtctcctg gtcacatcgg catcccggac aacgaacgag ctgataagct      5160
     cgccaaacag gctgtccatg cgtctgtatt agagactggc ctcccggctt ctgatctcca      5220
     gtctgtgttg cgccatagag tcgtgagctt gggccgctga gtggcgtagc ctgacccatc      5280
     ccaacaaact cagggcaata aaggagacta cggctgtgtg gcactcctcc atgcgggcct      5340
     ctcgccggga ctcgtagtcc tgtgccggct ccgcattggc cacacttggc tgacccatgg      5400
     ccatctcctc cgtggtgagg acccgcccat tgtcgctgtg gctcttcctt gacggtggcc      5460
     cacattttgt ggactgccgt cttttagccg ccctgcggcg gggttttaat tttcctgcag      5520
     ttttatctga agttttacgt aacgatgcca taatggctga ctctgtttta ggttttattc      5580
     gtgacagtgg tttttacaac tctatatgaa gctttgcttc agcccattgt attcgtttct      5640
     cttgtctatg tcctccgctt gaaggtttcc ttgtgttgcc ccgtggctga cccttcctat      5700
     tttaatttca tggtcggtca accacgaact tcggctttgt cgttccattt cctcacttgt      5760
     tcggtgtttc catgtgattg tctcctttcg tgttgtctcc tgtcatgttg tctcttgtcg      5820
     aatttgttga tattttattg attgagtggg gttttcctcc cattgcagtt ttaactctgg      5880
     gcgatttttc agtatttcca cacttattat ctcgcccttt gatggaatgg gggactgatg      5940
     accttcgcag ttttgtcccc ctaaaacacc aaaccaacca ccaac                      5985
//
ID   Nimb-29_LMi repbase;    DNA;    INV; 5785 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5785
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 207-207 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..1573
FT                 /product="Nimb-29_LMi_1p"
FT                 /translation="MELSSNFQPPSGMGVPLGGTNTHSKKRTRVASPPDFG
FT                 MNKRGNVNSNRALSAPQNVFMVIKRREGTFEKVSPFYIQKGLEGIAGNLKT
FT                 VKRLRNGTLLVETSTSQQVINIQQAQYLGEYAIESELHHTLNCSKGVVTCR
FT                 DLVDIPQGELKEEWASEGIVDVRHIMKRINGELVKSESFIVTFNTPKLPEH
FT                 VKAGFLWLKVRPYYPNPMRCFKCQRFGHTTLGCNGEPTCGKCAQAAHDGDD
FT                 CSPPFKCVNCSGDHPVWSRECTAYLAERKVQEIKTAKRISYAEARKIYKAM
FT                 QPPSFTTSFAAALQKSTPKVEASTQTDFSSVGTNTCSCPCTCKAAEVTAPV
FT                 ALPKMVEQGTATDSEELLPPSLPESLPKTSVASASTAETSKKVKAKKG"
FT   CDS           join(1665..1808,1815..2705,2555..3658,3662..4762,
FT                 4766..5503)
FT                 /product="Nimb-29_LMi_2p"
FT                 /translation="MEIDVTLGQSTRSKTDLQLGQTSRPKGEPPPVTGGQS
FT                 HQKERVKIQPPMASILQWNCQGFRMHVEELRLLSQGRPMCICLQETNFKPA
FT                 DSPEIRGYSLHRKDDVSGERARGGVAVFVSTAYHSEPISLNTTLQAVAVTV
FT                 HAHHRLTVCSLYLPPHDPLNEEALEDLLQQLPHPFILCGDFNAHNVLWGSV
FT                 ATCPRGRAVERFLLSSCAHVLNTGKSTHFCAATGSFSAIDLTLCSPALAHF
FT                 AQWEVDADLHCSDHFPIWIDLPDRANPERHPPRWMLSRADWTLYGQLAELK
FT                 PCDGIQEWVDHATEIIHHAATVSIPRSSGRPKRHPVPWWNAECLLPSEPEE
FT                 RLRHPGMGGSCYRNNPPRCHCVHSKVFWAPEKASSPLVECRMPSAIRTRRA
FT                 ALRRFKSHPTAENLAAFRVARAQSRRIIRESKKRSWQQFLNSLNCSTKTSV
FT                 VWETIRRISGRGGRCPVAAVMGNGILHTTPRDIAQTMAAYFSTVTASAGYD
FT                 PAFQRHRVAAERVILDFRSSIEEDYNCPFTMWELDSALSVARDTSPGHDGI
FT                 YYSMIRHLTRQNQEILLDLFNYIWASGQFPDSWREAILIPILKPGKDRTSP
FT                 SSYRSVALTSCVGKTLERMVNRRLVWMLESRQLLSRFQCGFRRYRSTFDNL
FT                 ALLEAAIQQAFLRRHHLLGVFFDIDKAYDTTWRHLILRQLHDWGFRGCLPR
FT                 FIQSFLSPRYFRYVGDALSDRFEQENGVPQGSVLSVTLFAIAINSITSVVK
FT                 SPVQCSLFVDDFSVFCSSSNLATTTRQLQLTLQRLDDWARRTGFKFSTEKS
FT                 VCVLFNRSRTVFNLPELRMRGSVLTFKDTVRFLGLTFDCKLTWLPHLKDLK
FT                 TRCLKALSILKCLSHTSWGADRTCLLRFYRAFVRSRLDYGCTVYGSARPSY
FT                 LKMLDAVHHAGIRLATGAFRTSPIPSLCAEAAEPPLYIRRRLLMVCQAYKS
FT                 LSTPFTPTYHTIARPPLERLFHNRQRATRPYGIRARDCLLEMGLAGFNVLQ
FT                 RGWSRVPPWLLQRPRLVLDMTSFRKEETSDFTFQSVFYNVLDHHHGFTVVY
FT                 TDGSKQGDSVGCSIVFPNRVVKVLPEYYSVYSAELHAIFKALQLIRRIQGK
FT                 RFLLCSDSLSALQSLQQLFPSVTLLQQIQDELSFIQRRGKVVSFCWVPGHA
FT                 GIPGNEEADRAAKEACREPEVALCPIPLQDIDSLLRQRSLKLWEEEWLSVA
FT                 NNKLRLLKPTVRPWRSSSQPIRRDEVALTRLRIGHCPFTHGFLFRREDPPV
FT                 CDTCGVQITVRHILIECDLYHAERVAANLGADLPSILGNDEESVKKVLHFC
FT                 DLSQLWPKLLGWRI"
XX
SQ   Sequence 5785 BP; 1350 A; 1428 C; 1454 G; 1549 T; 4 other;
     cccctcaggg ggctcaacaa taatttgttg agtatgggct tggcgaaccc ggggtccctg        60
     agctggggac tggtaagcgc cgccagtcct ctagacaccg taacctctgg gctcgcttca       120
     gcgaccaccg tgtggcatgg cggtggaacg ttgtgggtac cagggaatgg ggatcttggc       180
     ttgaccgccc aggtcgcgag gaaggaaata cctctctaaa aaaaaacctc aatcttaagg       240
     tgtgctacgc gctgatggga tgcatggctg ttgaggtgga acagtcgcta gcgagcaacc       300
     tctggggata ctgccgcacc tcagttgtat aaggcttacc taggcatgcg gggctctgtc       360
     taggcggaca cgtacttccc tagctactcg tgggatcgaa atggaactct cgagtaattt       420
     tcaacctcct agtgggatgg gtgtaccact ggggggtact aacacccact ctaagaagag       480
     gactcgggta gccagtcctc cggattttgg gatgaacaag aggggcaatg tgaatagtaa       540
     cagagcactt tctgctccgc agaatgtgtt tatggtaatt aagagaagag agggtacctt       600
     tgagaaggtc tcaccttttt acatacagaa gggactagaa ggcattgctg gwaatttaaa       660
     gaccgtgaaa cgtttgcgta atgggacact gttggtggag acctccacat cacaacaggt       720
     gattaatatt cagcaggctc aataccttgg ggagtatgcc atagaatctg agctgcatca       780
     cacccttaac tgcagcaaag gtgtagttac ctgcagggat ctggtggata ttcctcaggg       840
     cgaattaaaa gaagaatggg cttcggaagg cattgtagat gtccgacata tcatgaaaag       900
     gataaatggc gagctggtta agtcagagtc atttattgta acatttaata cgccaaagct       960
     cccggaacat gttaaggcag gtttcctttg gctgaaagtc mgaccttatt accccaaccc      1020
     aatgcgctgt ttcaaatgcc agcgctttgg gcataccacc ttggggtgta atggtgaacc      1080
     gacctgcgga aagtgtgctc aggccgcaca tgatggagac gattgttcgc ctcccttcaa      1140
     gtgcgttaac tgttctggtg accaccccgt ttggagtaga gaatgcactg catacctcgc      1200
     ggaacgcaag gtgcaggaga taaagacagc caagcgcatc tcctatgctg aagccaggaa      1260
     aatctataag gccatgcaac cgccgtcatt taccacctct tttgcggcgg cccttcaaaa      1320
     gtctactccg aaggttgagg cgtctacaca gacggacttc tccagtgttg gtacgaacac      1380
     ctgctcatgc ccgtgtacgt gtaaggcggc agaagttaca gcccctgtag cccttccaaa      1440
     aatggtggaa caaggtactg ccactgacag tgaagagctc ctgccacctt cactgccaga      1500
     atcacttccc aagaccagtg tagcgtccgc ttcaactgct gaaacatcca aaaaggttaa      1560
     ggcaaaaaaa ggataaggaa aagtcccatg tgaaacttac tagtaaacag tcagaccagg      1620
     ttgatattac tcttgatgtg ccttgtgatt cagctccaga atccatggag attgatgtaa      1680
     ctttggggca gtcaactcgc tccaaaactg accttcaact ggggcaaaca tctcgcccca      1740
     aaggtgaacc ccctcctgtt acaggcggcc agtcccatca gaaagagagg gtgaagatac      1800
     agcctccttg ataaatggcc tccatcttgc agtggaactg tcagggattt agaatgcatg      1860
     tggaggaact ccggttatta tctcagggac gacccatgtg tatatgtctc caggagacaa      1920
     atttcaaacc tgctgatagc cctgagatac gtggttacag tctccacaga aaggacgacg      1980
     ttagtggaga gagagcgagg ggaggagtgg ctgtttttgt cagcacagcc taccactctg      2040
     aacccatctc cctcaacaca acgttacaag cagttgcagt gactgtacat gcgcaccacc      2100
     gactgactgt gtgctctctg tatctgcctc ctcacgatcc tctcaatgaa gaggctcttg      2160
     aagacctcct tcaacagctc ccccacccat tcatcctttg tggtgatttt aatgcacaca      2220
     atgtgctttg gggctctgta gcgacctgcc ccaggggtag agcagttgag aggtttctct      2280
     tatcttcatg cgcccatgta ctaaatacag gtaagagcac acacttttgc gctgcaacag      2340
     ggtcgttctc tgccatcgat cttacactct gctctccggc ccttgcccac tttgctcaat      2400
     gggaagtgga tgcagacttg cattgtagtg atcactttcc gatttggatt gatcttccag      2460
     acagagcaaa ccccgaaagg catccacctc gatggatgct tagtagggcg gactggactc      2520
     tttatggcca acttgccgaa cttaagccct gtgacggcat ccaggaatgg gtggatcatg      2580
     ctaccgaaat aatccaccac gctgccactg tgtccattcc aaggtcttct gggcgcccga      2640
     aaaggcatcc agtcccttgg tggaatgccg aatgccttct gccatcagaa ccagaagagc      2700
     ggctctgagg cggttcaaga gccatccgac tgcggagaac cttgcagctt ttcgggtggc      2760
     aagggcccaa tctcgccgga ttattcgcga gagtaagaag agatcatggc aacagtttct      2820
     aaattctctg aactgttcca ctaagacctc agttgtatgg gagactatca ggaggatctc      2880
     gggaagagga gggaggtgcc cagtagctgc tgtgatgggg aatggtattc tccacaccac      2940
     cccgcgtgac attgcccaga ctatggcggc ctatttttcg acagttactg cctctgccgg      3000
     ttacgatcca gctttccagc gccaccgggt ggctgctgag agggttattt tggacttccg      3060
     gtcaagcatt gaggaagatt ataactgccc cttcactatg tgggaactgg attccgcatt      3120
     gtctgtggct cgtgacacct caccaggtca cgatggaatc tactactcta tgatacggca      3180
     cctgacgagg caaaatcagg aaatcctcct cgaccttttt aactacatct gggcgtcagg      3240
     ccagttccct gactcgtgga gggaggccat tttaattcct attttaaaac ccgggaaaga      3300
     ccgcacaagc cccagtagtt atcgtagtgt tgctctgact agctgtgtgg ggaagacctt      3360
     agagcggatg gtcaaccgcc gccttgtctg gatgctggaa tccaggcagc ttctcagccg      3420
     ctttcagtgt gggttcagga gatatcgctc cacctttgat aacctggccc tcctggaggc      3480
     ggccatacaa caggctttcc tgcgtcggca tcaccttctg ggggtatttt tcgatattga      3540
     caaagcctat gatactactt ggcggcatct tatcctcagg cagctccatg actggggttt      3600
     tcgtggttgt cttccccgtt ttattcaatc attcctttct ccacgttatt ttagatactg      3660
     agtgggagac gccctttctg atcgctttga gcaggagaat ggagtccctc agggtagtgt      3720
     tttaagtgtg accttgtttg caatagctat taacagtatt acttctgtcg tgaaaagtcc      3780
     tgtgcagtgt tctctttttg tggatgactt ctctgtcttt tgctcttcat ccaatctagc      3840
     aacgactaca cgtcagttgc aactgactct tcaacgattg gatgactggg caaggaggac      3900
     tggttttaag ttttccactg agaagtctgt gtgtgtcctt tttaaccgtt cacgtactgt      3960
     ttttaatctm cctgaactgc ggatgagggg ctctgtgctc acttttaaag acacagtgcg      4020
     gtttctgggc ctcacatttg attgtaaact tacgtggttg ccacacctta aggacctgaa      4080
     gacccggtgc ctgaaagcac tgtcaatttt aaaatgtctt agtcatactt cttggggagc      4140
     tgacagaacc tgtttgcttc ggttttatag agccttcgtg cgatcccgtc ttgattatgg      4200
     gtgcacagtt tacgggtctg cacgtccatc ttatttaaag atgttggacg cggtacacca      4260
     tgcagggatt cggctggcaa ctggggcatt taggacgagc cccataccaa gtctctgtgc      4320
     tgaggctgca gagccgccac tgtacatcag gcgacggctg ctcatggtgt gccaggcata      4380
     caagtcgctg tccacacctt tcacaccaac ataccatacc attgctcggc ctccattgga      4440
     aaggctcttt cacaatcggc aacgagcgac gaggccatat gggattcgtg cgagggattg      4500
     ccttcttgaa atggggttgg ctggttttaa tgttctacaa cgtggctgga gcagggttcc      4560
     cccttggctt ctccagaggc ccaggcttgt tttagatatg acgagcttca ggaaagaaga      4620
     gacttccgat tttacttttc agtcagtgtt ttataatgtt ttagatcacc atcacggttt      4680
     tacagtggtg tatacagatg gctccaagca gggggactca gtcggttgtt ccattgtgtt      4740
     ccccaaccgt gttgttaagg tttgactccc cgaatactat tccgtttatt cggcagagct      4800
     acatgctatc ttcaaggcac tacagctgat acgtcgaata cagggaaaac gatttctgct      4860
     ttgctctgat tccctcagtg ctctgcagtc actacaacag ctattcccgt ctgtgacttt      4920
     gctgcaacaa atccaggatg aactgtcctt catccaacgt cgtgggaagg tggtatcgtt      4980
     ttgctgggtg cctgggcatg ctggtattcc ggggaatgaa gaggctgatc gggctgccaa      5040
     agaggcttgc agagagcctg aagtggcact gtgcccgatt cccttgcagg atattgactc      5100
     tttgttacgg cagcggtctc tgaaattatg ggaggaagaa tggctttcag tggcaaataa      5160
     caaactgcgg ttgctgaagc ccactgtccg tccatggcgc tcctcctccc agcctatcag      5220
     gagggatgaa gtcgccctca cccgcctccg aatcgggcac tgcccattta cacacggttt      5280
     tttattccga cgagaggatc ccccagtctg tgatacctgt ggcgtacaga tcactgtccg      5340
     ccacatttta attgagtgtg acttatatca tgcagagagg gtagcggcga atcttggtgc      5400
     agatttgcct tcaattttag ggaacgacga agagagtgtg aagaaagtct tacacttttg      5460
     tgacttgtct caactctggc ctaagctttt aggctggagg atttaatatg ttgcagagtg      5520
     gttggctcac cctttttatc gctgtggtca gccagctatg gtcatstgct tatttgtttt      5580
     tactatctct ccgacctttt tcatggagta ctatcctcat cttcacctct aacctttact      5640
     ttttgtattt tacgtcagtt gctcatgtta ctgctctctt ttcttttatt ttgtttgttc      5700
     acactccttg cttcttaatt ttttaaattt gtccgggcgc tgaagaccta gctgtcgagc      5760
     gcccaaaacc cccctatcct atcct                                            5785
//
ID   Nimb-2B_LMi repbase;    DNA;    INV; 5903 BP.
XX
AC   .
XX
DT   01-MAR-2014 (Rel. 20.01, Created)
DT   01-MAR-2014 (Rel. 20.01, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5903
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 201-201 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           612..1046
FT                 /product="Nimb-2B_LMi_1p"
FT                 /translation="MGDISAMTSFSSTVTLTQKRKIDSPQCKKTLPNLPKF
FT                 LVVSRTDGQDFSSVNPFVIQKGVDAIAGPVKTCSRQRNGTLLLEADSAFQA
FT                 QKLIRTTLLHTFPVQVEAHRTLNSSRGVVFTRSLDGLSDEEIQNYMSDQGV
FT                 TAVHRC"
FT   CDS           1043..1789
FT                 /product="Nimb-2B_LMi_2p"
FT                 /translation="VLKKVDNQLTPTRTVFLTFDRVELPSKVKAGYEVISV
FT                 RPYVPNPTRCFQCHRFNHTRQSCPNTAKCVTCGRDAHEGDCPPPSPHCINC
FT                 NGDHAASSRDCPVYKDEKVIQQIRVTEKVSTSAARKLLASRKPTVLPAGTY
FT                 SKVLTSTRPTKDAGTQTCDFTFADTVVRSASPKIARSTSPLPPAPSKVQSS
FT                 STSNKPRAPKQDARTSKKEPVREDFLRTQASQPSTASSSHRHSSKRANKKE
FT                 FLSFPAEA"
FT   CDS           1982..5749
FT                 /product="Nimb-2B_LMi_3p"
FT                 /translation="QCSLEVRPSAAVEVTPFCLVLLFSPLILIMALLQWNI
FT                 RGIRSNREELKLLLRLHCPLIVSLQETKLRPQDRIAFPQYTSVRYDLPPVD
FT                 GIPAHGGVMLLVRDDIYSHPISLNTHIQAVAIRITLPTLSFSLCNIYTPSS
FT                 SAFTRADVLQLVAQLPPPFVLLGDFNAHHPLWGSPASCQRGSLLADLFNHL
FT                 NLVCLNTGSPTFLSDTTHTYSHLDLAICTPQLAHRFEWYALSDTYSSDHFP
FT                 CVIHLLHHTPSPRSTTWNISKADWGLYSSMAVFHDQHFPSCDSQVQYLTEV
FT                 ILTAAEHSIPRTSSSPRRVPVPWWTAACSDAIRARRRALRTFQRHPTMENC
FT                 IHYKRLRAQCRRVIKESKKACWTAFTSSFNKFTPSSVVWGSLRRLSGTKVH
FT                 SPISGLTVANAVLVDPVDVSNALGRSFAEVSSSAHYHPAFLPRKQAEEARP
FT                 PSFQSLNRESYNDTFTMQELDRALAMSRSSAPGPDAIHIEMLKNLSPAGKC
FT                 FLLRTYNRIWTEGQVPTSWREAIVVPIPKPGKDKHLPSSYRPISLTSCVCK
FT                 VMERMVNARLVWLLESRRLLTNVQCGFRRHRSAIDHLVTLSTFIMNNFLRK
FT                 RQTVAVFFDLEKAYDTCWRAGILRTMHTWGFRGRLPLFIRAFLTDRRFRVR
FT                 VGSVLSDPFCQENGVPQGSVLSVVLFAIAINPIMDCLPPDVSGSLFVDDFT
FT                 IYCSAQRTCLLERCLQRCLDRLYSWSIANGFRFSNEKTVCINFWRYNEFLP
FT                 PSLHLGPVALPFVETTKFLGLTXDRKLCWSPHVSSLAGRCTRSLNVLRVLS
FT                 GTSWGADRTVLLHLYRSIVRSKLDYGSIVYASARPSILRRLNSIHHRGLRL
FT                 AIGAFYTSPVESLYAEAAELPLHYRRDILLCRYACRLLSMPKHPSYPSFFN
FT                 DSLDRQYGVSASALLPPGVRFRRLLQQLDFTLPDTLRMDVSPTPPWLQAQV
FT                 RVHLELSSLPKESTPDSVYRSRFVELRSQLDDNIFIYTDGSKNTDGVGSAF
FT                 VVGFDSFQYKLIDQCSNFTAELFALYQAVQYVRRHHHPSYVICSDSLSAIQ
FT                 SLRDPYPVHPVVLRLQRSLQLVAEDGFRVRFLWVPGHVGVPGNEAADAAAR
FT                 AATLLPRTATVCVPSNDIQGAICRRIVASWHRLWSSLQDNKLRTIKPIPTA
FT                 WKTSSRPSRREEVILARLRIGHCRFSHRHLLTGDPPPVCSCGHPMTVRHVL
FT                 MFCPNFNHVRVAVNLPSTLEDILADDARAAARVLRFIHMTNLSKDI"
XX
SQ   Sequence 5903 BP; 1238 A; 1770 C; 1295 G; 1599 T; 1 other;
     gggggcccac agctcttttg tgggtacgtg tgtggcgcgc acggggcccc gagccgaagc        60
     agccttcctt cccgccccag gctgcttcat ttcccctccc ggttcatgcc ttagcccgga       120
     gacgggcgtc cattgcaagt caaggtggtt tcctgtcgta gtttttctct ttccttggtt       180
     tcttcctttc ctaacccttg cttctgtctt tcactccttg ctgtactctt ctagccttcc       240
     tctcctcctc atttagtctc cgcttcggcg tttgagacac tctcttcttt ctcttcactt       300
     cctctattct tcttctttcc tccctgtgcg tgtctgaagg ccgacccacg cattctcatg       360
     cgtagcaggt gacggggtaa tgcgtaattc cccgccccgg gtagacaagt agggcacgta       420
     cgtaccccct ggtaaaggcc aggcccaggg aggggtgatt acccgagctg gtaccttccg       480
     aacatgccga ttggtccctc cgtccgttct cgggaggtgt gacctgaggt gtgaacaatc       540
     acctaaggcg ggtaagccct cagtgagggc ccccactagg aaggagcgcg ccatcggaga       600
     cgccggtaat catgggggac atttccgcaa tgacttcctt ctcttctact gtgactttga       660
     cccaaaaaag aaagatagat tcacctcagt gtaagaaaac tttgcctaat cttcccaaat       720
     ttctggttgt ttctcgaact gacggtcaag atttctcttc tgttaatcct ttcgtaattc       780
     agaagggtgt tgatgcgatt gctggccctg ttaagacctg ttcccggcag cgcaatggaa       840
     cattgttgct ggaagcggac agtgctttcc aggcgcaaaa actgataagg actacgctac       900
     tacacacgtt tcctgtccaa gtagaagcgc atcgcacgct caactcgtca cggggggtag       960
     ttttcacaag atcccttgac gggttatcag acgaagagat ccaaaactac atgtctgatc      1020
     agggtgtaac agccgtgcat aggtgttgaa aaaggtcgat aaccagctaa caccaactcg      1080
     tactgtgttt ttgacgttcg acagagttga actcccgtcc aaggtcaaag caggatatga      1140
     agttatctcc gttcgccctt atgtaccaaa ccctacgcgc tgtttccaat gccatagatt      1200
     caaccacacc cgtcaatctt gccccaatac agcaaaatgt gtcacttgtg gtagggacgc      1260
     ccatgagggc gactgcccac ctccgtcccc tcactgcatt aattgcaatg gtgaccatgc      1320
     tgcttcctct agggactgcc ctgtttataa agacgagaag gtcattcagc aaattcgggt      1380
     cacggaaaag gtctcaacat ctgctgctcg aaagttatta gcgagtcgga agcccactgt      1440
     ccttccagcg ggcacataca gtaaggtcct cacctccacc cgacctacta aggatgcagg      1500
     tacacagacc tgtgatttca ctttcgctga cacagttgtg cgatcggcca gcccgaagat      1560
     tgcccgttcc acgtccccgc tccctcctgc tccttctaaa gttcagtctt cgtcaacctc      1620
     taataaaccg cgggcaccta aacaagatgc ccggacttcg aaaaaggaac ctgtccgtga      1680
     agattttctc cgtactcagg cttctcaacc gtcaactgcc tcttcttctc accgtcactc      1740
     ttccaaaaga gctaacaaaa aagagttcct ctccttcccc gccgaggcgt gactcatccg      1800
     tcacgccgcc caacagtagc cggccccggt catcctctgt ctcgccggga cgcactactg      1860
     ttagccgggc aaccggcgtt ttaccggcgg aggatgctgc ccctaccgat caactcggga      1920
     aggcggcaga aattccagtc gcactgatgg aacaagattt tccaccaatg gattgcgata      1980
     gcagtgctcc ctcgaagtca ggccctcagc ggccgtcgag gtgaccccct tttgcctcgt      2040
     tcttctcttt tctcccctta ttcttatcat ggcgcttctt cagtggaata ttcgaggcat      2100
     tcgctccaat cgcgaggaat taaaattact ccttcgattg cactgtccgc tcatagttag      2160
     cctccaagaa accaagttac gcccacagga tcgtatagcc ttccctcaat atacctctgt      2220
     gcgttatgac ctacctcctg tggatggtat tccagcccat ggaggggtta tgttgctcgt      2280
     tcgggacgac atctattccc atcccatctc tctgaacact cacatacagg cagttgccat      2340
     ccgcatcact ctccctaccc tttccttctc tctctgcaat atctataccc cgtcatcgtc      2400
     tgcctttact agggcagatg tgctgcaact tgttgcccag cttcctccac cttttgtttt      2460
     gcttggcgac ttcaacgccc accaccccct atggggttct ccagcatctt gccaaagagg      2520
     ctcccttcta gcagaccttt tcaaccatct caatcttgtc tgcctaaaca ccggttcacc      2580
     aacattcctt tcagacacaa cgcacaccta ttcccacttg gacctcgcga tatgcactcc      2640
     tcagctagcg catcggttcg agtggtacgc cctttctgat acgtactcga gcgaccattt      2700
     cccttgtgta atccacctac tgcatcatac cccatctccg cgttccacca cctggaacat      2760
     ctccaaagcc gactgggggc tgtattcttc catggcggtt ttccacgacc agcatttccc      2820
     cagctgcgac agtcaggtcc agtacctcac agaggttatt ctcactgctg ccgaacattc      2880
     catacctcgt acttcctctt ctccacgccg cgtcccagtc ccctggtgga ctgcagcatg      2940
     cagcgacgct attagagccc ggcgacgtgc tctacgcacc tttcaacgcc acccaacgat      3000
     ggagaattgc atccattaca aacgactgcg agcgcaatgc cgtcgtgtta taaaagaaag      3060
     caaaaaagcc tgttggactg ccttcactag ttcttttaac aaattcactc cctcctcggt      3120
     tgtctggggt agcctgcgcc ggttatctgg cactaaggtc cactccccaa tttcaggcct      3180
     gacagtagcg aacgcagtcc ttgtggaccc cgttgacgta tccaatgcct taggccgctc      3240
     ttttgcggag gtttcgagct ctgctcatta ccaccctgcc ttcctccctc gcaaacaggc      3300
     agaggaggca cggccgcctt ctttccaatc tttaaatcgt gaaagttaca atgacacctt      3360
     cactatgcag gaactagacc gtgctctcgc catgtcccgc tcctctgctc cggggcccga      3420
     tgccattcat attgagatgt tgaagaacct ttctcctgcg ggtaaatgtt tccttctccg      3480
     cacctataat cgcatatgga ctgaaggtca ggtccccaca agttggcgtg aagccattgt      3540
     tgtccccatc cccaaaccag ggaaggacaa acatcttcct tccagttatc gccccatttc      3600
     tcttaccagc tgtgtctgta aggtgatgga acgcatggtt aacgctcgtt tggtttggct      3660
     ccttgaatcc cgacgcctcc ttaccaatgt ccaatgtggt tttcgtcggc accgctctgc      3720
     aattgaccac ctcgtcacct tgtcgacttt tattatgaat aactttttga gaaagcgcca      3780
     gacggtggct gtgttctttg atttggagaa ggcctacgac acctgttgga gggcgggaat      3840
     tctccgcacc atgcatacct ggggctttcg cggccgtctc cccctcttta tccgtgcatt      3900
     tttaacggac cgacgttttc gggtacgagt gggctctgtt ttgtcagacc ctttttgcca      3960
     ggagaatggg gtgccacagg gctccgtttt gagtgtagta ctcttcgcca tagcaattaa      4020
     cccaattatg gactgcctcc cacccgacgt ttctggttcc ctctttgtgg acgatttcac      4080
     aatctactgc agcgctcaaa gaacgtgtct attggagcgc tgtctccagc gttgtcttga      4140
     ccgtctttat tcttggagca tcgcaaatgg cttccgtttc tccaatgaga aaacagtgtg      4200
     catcaacttc tggcgataca atgagttcct tccaccatct ctacatctag gccccgtcgc      4260
     tctcccattc gtggagacaa cgaaattctt aggactaacg ttkgatagga aactttgttg      4320
     gtctccacac gtgtcttctc tggctggccg ttgtacacgt tcccttaatg tcctccgtgt      4380
     tcttagcggt acgtcatggg gagctgatag aaccgtcctt cttcaccttt atcggtccat      4440
     agtccgatcg aagctggatt acggaagcat tgtttacgca tccgcacggc cgtccatctt      4500
     gcgccgtctt aactcaattc accatcgggg gttacgccta gcgattggag ccttctatac      4560
     cagccctgtt gaaagcctct atgcagaagc tgccgaatta ccattgcact atcggcgtga      4620
     tatattactc tgtcggtatg catgccggct gctgtcaatg cccaaacacc catcctaccc      4680
     atcatttttc aacgactccc ttgatcgcca atatggggtg tctgcatctg cactgttgcc      4740
     tcccggagtt cgttttcgtc gcctgcttca gcaactcgat ttcaccctcc ctgacaccct      4800
     tcgaatggat gtgagcccaa caccaccgtg gcttcaggca caggttcgcg tccacctcga      4860
     actcagctcg ctcccaaagg agagtacccc ggattcggtg tatcgctcaa ggtttgtcga      4920
     acttcgttct cagcttgatg ataacatctt catctataca gatggctcta agaacactga      4980
     tggtgtcgga tccgcctttg tcgtcgggtt cgacagcttt caatacaagc tcatcgacca      5040
     atgctcaaat ttcacagctg agctttttgc tctctatcag gcagtccaat atgttcgccg      5100
     ccaccaccac ccttcttatg tcatctgctc agattcactc agtgccattc agagtcttag      5160
     agacccgtat ccggtccatc ctgttgtact cagactccaa cgctcccttc aattggtagc      5220
     tgaagacggc tttcgcgttc gcttcctgtg ggtacctggc cacgtaggtg tgccggggaa      5280
     cgaggctgct gacgctgcgg ccagggctgc cactctccta cctcggacag ctaccgtttg      5340
     tgtcccgtca aacgacattc aaggggctat ttgcaggcgt attgttgcat catggcatcg      5400
     gctgtggtcc tcgcttcagg acaataagct tagaaccata aaaccgatcc cgacagcttg      5460
     gaagacctcc tcccgcccct cccggcggga ggaggtaatc ttggcccggc tgagaatcgg      5520
     tcattgccgg ttcagccacc gacacttatt aacaggcgac cccccaccag tatgttcctg      5580
     cggtcacccg atgacggtgc gccatgtttt aatgttctgc cccaatttta atcatgttcg      5640
     tgttgcagta aatctgccgt ccactttgga ggacatttta gctgatgacg cacgggcagc      5700
     tgctagagtt ttgcgtttta tacatatgac taatttgtcc aaggacattt aattccttct      5760
     aatgatattt tttattcctc gttttagtga tattctgaaa ttctccttat cggcaccttt      5820
     ttttaacctt gttttaagtc aatctagggt cagaatcggg cgctaatgac cactgcagtt      5880
     gagcgcccta aaaccacaaa aaa                                              5903
//
ID   Nimb-2C_LMi repbase;    DNA;    INV; 5907 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5907
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 202-202 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..1787
FT                 /product="Nimb-2C_LMi_1p"
FT                 /translation="MTSFSSSVTLTQKRKIDSPQHKKTLPNLPKFLVVSRT
FT                 DGKDFTSVNPFVIQKGVDAIAGPVKTCSRQRNGTLLLEADSAFQAQKLIRT
FT                 TLLHTFPVQVEAHRTLNSSRGVVFTRSLDGLSDEEIQTYMSDQGVTAVHRV
FT                 LKKVDNQLTPTRTVFLTFDRVELPSKVKAGYEVISVRPYVPNPTRCFQCHR
FT                 YNHTRQSCPNAAKCVTCGRDAHEGDCPPPSPHCLNCNGDHAASSRDCPVYK
FT                 DEKVIQQIRVTEKVSTSAARKLLASRKPTVLPAGTYSKVLTSTRPTKDAGT
FT                 QTCDFTFADTVVRSASPKIARSTSPLPPAASKVQSSSTSNKPRAPKQDART
FT                 LKKEPVREDFLRTQASQPSTASSHRHSSRRANKKEFLSFPAEA"
FT   CDS           2073..5753
FT                 /product="Nimb-2C_LMi_2p"
FT                 /translation="MALLQWNIRGIRSNREELKLLLRLHCPLLVCLQETKL
FT                 RPCDRADFPHYTSVRFDLPPVEGTPAHGGVLMLIRDDVYHHPISLHTHLQA
FT                 VAVRITLSTFSFSLCNIYSPSSSALTRADVLHLVDQLPSPFVLVGDFNAHH
FT                 PLWGSPAPCPRGSLLVDLLQHLNLVCLNTGAPTFLSDTTHTYSHIDLAICT
FT                 PQLAGRFEWYALSDTYSSDHFPCVIHFLHHSPSPRPTSWNISKADWGLYSS
FT                 MAVFHDQNFSSCDSQVEYLTEVILTAAEHSIPRTSSSPRRVPVPWWTAACR
FT                 DALRARRRALRTFRRHPTLENSINYKRLRAQCRRVINDSKKACWTAFTSSF
FT                 NRFTPSSAVWGGLRRLSGIKVHSPISGLTVENAVLVDPADVSNALGRSFAE
FT                 VSSSAHYHPAFLPRKQVEEARPPSFHSFNRESYNVSFTMQELDRALALSRS
FT                 SAPGPDSIHIEMLKNLSPAGKCFLLSTYNRIWTEGQVPTSWREAIVVPIPK
FT                 PGKDKHLPSSYRPISLTSCVCKVMERMVNARLVWLLESRRLLTNIQCGFRR
FT                 HRSAADHLVTLSTFIMNNFLRKRQTVAVFFDLEKAYDTCWRAGILRTLHTW
FT                 GLRGRLPLFIQAFLADRKFRVRVGSVLSDTFRQENGVPQGSVLSVALFAIA
FT                 INPIVDCLSADVSGSLFVDDFAIYCSAQRTCLLERCLQRCLDRLYSWSIAN
FT                 GFRFSTEKTVCINFWRYKEFLPPSLRLGPVALPFVETTKFLGLMLDRKLCW
FT                 SPHVSYLAARCARSLNVLRVLSGTSWGADRTVLLHLYQAIVQSKLDYGSLV
FT                 YSSARPSILRRLNSIHHRGLRLATGAFYTSPVESLYAEAAVLPLTTRRDIL
FT                 LCRYACRLRSMPNHPSYPLFFDDSLDRQYQLSAIALLPPGVRFRRLLQRLD
FT                 FTLPSTFRLSESPLPPWHQAQVHTHLELSSLPKESTPDLVYRSRLVELRSR
FT                 FDNAIFIYTDGSKSTDGVGSAFVVGDNRFQYKLPDRCSNFTAELFALHQAV
FT                 LYTCRRRHPFYAICSDSLSALQSLKDPFSTHPLVYRIQRSLQLLADNGCHV
FT                 SFLWVPGHVGVPGNETADIAAKAAALLPRMATFCVPSDDVQRALRRXIVSS
FT                 WHSXWFSLHDNKLRTVKPIPTAWRTSSRPSRREEVILARLRIGHCRFSHRH
FT                 LLTADPAPLCSCGELLTVRHVLLSCPNFNHLRVALNLPSTLEELLADDTRA
FT                 AARVLRFINMANLSKDI"
XX
SQ   Sequence 5907 BP; 1168 A; 1784 C; 1332 G; 1619 T; 4 other;
     cccccagggg gcccacagct cttttgtggg tacgtgtgtg gcgcgcacgg ggccccgagc        60
     cgaagcagcc ttttttccgc cccaggctgc ttcactttcc ctcccggttc atgccttcgc       120
     ccggagacgg gcgtcctttg cgagtcaagg tggtttcctg tcctagtttc tctttttcct       180
     tggtttcttc ctttcctaac ctttgcttct gtctttctct ccttgctgta ctttcctagc       240
     cttcctctcc tcctcattag tctccgcttc ggcgtttgag acacttcttt ctcttcactt       300
     cctctattct tcttctttcc tccctgtgcg tgtctgaagg ccgacccacg cattatcatg       360
     cgtagcaggt gacggggtaa cgcgtaattc cccgccccgg gtagacaagt agggcacgta       420
     cgtaccccct ggtaaaggcc aggcccaggg aggggtgatt acccgagctg gtaccttccg       480
     aacatgccga ttggtccctc cgtcagttct cgggaggtgt gacctgaggt gtgaacaatc       540
     acctaaggcg ggtaagccct cagagagggc ccccactagg aaggagcgcg ccatcggaga       600
     cgccggtaat cacgggggac acttccgcaa tgacttcctt ctcttcttct gtgactttga       660
     cccaaaaaag aaagatcgat tcgcctcagc ataagaaaac tttgcccaat cttccgaaat       720
     tcctagttgt ctctcgaacc gacggtaaag atttcacttc tgtaaatcct ttcgtcattc       780
     agaaaggtgt tgatgcgatt gctggccctg ttaagacctg ttcgcgtcag cgcaatggaa       840
     cattgttgct ggaagcggac agtgccttcc aggcgcaaaa actaatacgg actacgttgc       900
     tacacacgtt tcctgtccag gtagaagcgc atcgcacgct caactcgtca cggggggtag       960
     ttttcacgag atcccttgac gggttgtctg acgaagaaat acaaacctac atgtccgatc      1020
     agggtgtaac agccgtgcat agggtgttga aaaaggtcga taaccagctg acaccaactc      1080
     gtactgtgtt tttgacgttc gacagagttg aactcccgtc caaggtcaaa gcagggtatg      1140
     aagttatctc cgtccgccct tatgtaccaa acccaacgcg ctgtttccaa tgccacagat      1200
     acaaccacac ccgtcaatct tgccctaatg cagcaaaatg tgtcacttgt ggtagggacg      1260
     cccatgaggg ggattgccca cctccgtccc ctcactgcct taattgcaac ggtgaccatg      1320
     cggcttcctc tmgggactgc cctgtatata aggatgaaaa ggtcattcag caaattcggg      1380
     ttacggaaaa ggtctcaaca tctgccgctc gaaagttgtt ggcgagtcga aagcccactg      1440
     tcctcccagc gggcacatac agtaaggtcc tcacctccac tcgacctact aaggatgcag      1500
     gtacgcagac ctgtgatttc actttcgctg acacagttgt gcgatcggcc agcccgaaga      1560
     ttgcccgttc cacgtccccg cttcctcctg ctgcttctaa agttcagtct tcgtcaacct      1620
     ctaataaacc gcgggcacct aaacaagatg cccggacttt gaaaaaggaa cccgtccgtg      1680
     aagattttct gcgtactcag gcttctcaac cgtcaactgc ctcttctcac cgtcactctt      1740
     ccagaagagc caacaaaaaa gagttcctct ccttccccgc cgaggcgtga cccatccgtc      1800
     acgccgccca acagtagtcg gccccgatca tcttctgtct cgccgggacg cactactgtt      1860
     agccgggcaa ccggcatttt accggcggcg gaagctgccc ctcctgatca actcgggaag      1920
     gtggcagatg cgtcagttga acccatggaa cacgattctc tgcctctaga tagcgatagt      1980
     agtgctccct cgaagtccgg tcctcagcgg ccgtcgaggt gaccccacct gcttgttcct      2040
     ttttatcttc ttttcttctc tcatttttta tcatggcgct ccttcaatgg aatattcgcg      2100
     gcattcgttc caatcgggag gaattaaaac tactccttcg attgcactgc ccgcttctag      2160
     tttgtctcca agaaactaag ttacgtccat gtgatcgtgc agacttcccc cactacacct      2220
     ctgtgcgttt cgacctgcca cctgtggaag gtaccccagc ccatggaggg gttctgatgc      2280
     tcattcggga cgacgtctat caccatccca tttcattgca tactcaccta caggcagttg      2340
     ccgtccgcat cactctatcc accttttcct tttccctctg taatatctat tcgccatcgt      2400
     catccgccct tactagggca gatgtgctac acctcgttga ccagctccct tcacctttcg      2460
     tgttggtagg cgactttaat gcccaccacc ccctatgggg ctctccagca ccttgtccga      2520
     gaggctccct tttggtggac cttctccaac acctcaatct tgtctgcctc aacaccggtg      2580
     caccgacctt cctttccgac acaacacata cttattccca tatagacctc gcgatatgca      2640
     ctcctcagct tgccggtcgg tttgagtggt atgcactttc tgacacgtac tcgagtgacc      2700
     atttcccttg tgtcatccac ttcctgcatc attccccatc tcctcgtccc accagttgga      2760
     acatctctaa agccgactgg gggctttatt cttccatggc tgtttttcac gatcagaatt      2820
     tttccagctg tgacagtcag gtcgaatacc tcacagaggt tattctcaca gctgccgaac      2880
     attccatacc tcgtacatcc tcttctccac gtcgcgtccc ggtcccttgg tggactgcag      2940
     cctgccgcga cgctcttaga gcccggcgcc gtgctttacg caccttccgc cgccacccaa      3000
     cgttggagaa tagtatcaat tataaacgac tgcgagcgca atgtcgtcgt gttataaacg      3060
     acagcaaaaa agcttgctgg actgctttta ccagttcttt taaccgcttt actccctcct      3120
     cggctgtctg gggtggccta cgccgtttat ccggcatcaa ggtccactcc ccgatttctg      3180
     gcctgaccgt cgagaacgca gtccttgtgg accccgctga tgtttccaac gcattgggcc      3240
     gttcctttgc ggaggtttcg agctctgccc attaccaccc tgccttcctc cctcgcaaac      3300
     aggtagagga ggcacggccg ccttctttcc actcttttaa tcgtgaaagt tataatgtct      3360
     ccttcaccat gcaggagcta gaccgtgctc tcgccctgtc ccgatcttct gctcccgggc      3420
     ccgattccat ccatattgag atgctgaaga acctttctcc tgcgggcaag tgtttcctac      3480
     ttagcaccta taatcgcata tggactgaag gtcaggttcc cacaagttgg cgtgaagcca      3540
     ttgttgtccc catccccaaa ccagggaagg acaaacatct tccatccagt tatcgcccca      3600
     tttctcttac tagctgcgtc tgtaaggtga tggaacgcat ggttaacgct cggttggtct      3660
     ggctcctcga atctcgacgc ctcctgacta atattcaatg tggttttcgt agacaccgct      3720
     ctgctgctga tcacctcgtc accttgtcga ccttcattat gaataacttt ctaaggaagc      3780
     gtcaaacggt agcagtgttc ttcgacttgg agaaggctta cgatacctgt tggagggcgg      3840
     gcattctccg cacattgcac acatggggcc ttcgtggccg cctccctctc tttattcaag      3900
     cgtttttggc ggatcgcaag ttccgggtac gggtgggctc tgttttgtca gatacctttc      3960
     gccaggagaa tggggtgcca cagggctccg tcttgagcgt ggctcttttt gccattgcaa      4020
     tcaatccgat cgtagactgc ctttcagccg acgtttccgg atcccttttt gtagatgatt      4080
     ttgcaattta ttgcagcgcc cagcggacgt gtctcttgga gcgttgtctt caacgctgtc      4140
     ttgaccgcct atattcctgg agcattgcga acggcttccg cttctccact gagaaaacgg      4200
     tgtgtataaa cttctggaga tacaaggaat ttcttccacc atctctacgt ctcggccccg      4260
     ttgctctccc attcgtggag acaacaaaat tcttggggct aatgttggat cgtaaacttt      4320
     gctggtcccc acacgtgtct tacctggctg cccgttgtgc ccgatccctt aatgttctcc      4380
     gtgtcctcag tggcacatca tggggagcgg atcgtaccgt cctgcttcac ctttaccagg      4440
     ccattgttca gtcgaagctc gactacggaa gccttgtata ctcttctgca cggccgtcga      4500
     ttctccgccg tctcaactct attcaccatc ggggattacg cctggcgacc ggtgcatttt      4560
     ataccagccc tgttgaaagt ctgtatgccg aagctgctgt attacccttg accactcggc      4620
     gtgacatact cttgtgtcgg tacgcatgcc gactgcggtc gatgcccaac catccatctt      4680
     acccattatt ttttgacgac tcactcgatc gccaatatca gttgtctgcg atagccttgc      4740
     ttccacctgg agttcggttt cgccgcctgc ttcagcggct cgattttacc cttccttcca      4800
     cctttaggtt gagcgagagc ccattgccac cgtggcatca ggcccaggtt cacactcacc      4860
     ttgaacttag ttcgctcccc aaggagagca ctccggattt ggtataccgc tcgaggcttg      4920
     tcgaactccg ttcgcggttc gataatgcca tatttatcta cactgatggt tccaagagca      4980
     ctgacggtgt cggatctgcc ttcgtcgtcg gggacaaccg gttccaatac aagctccctg      5040
     accggtgctc gaatttcacg gctgagcttt ttgccctcca ccaggctgtt ttatatacct      5100
     gccgccgccg ccatcctttt tatgccatct gttcggactc ccttagtgcc ctgcagagtc      5160
     ttaaggaccc tttctcgacc catcctctcg tgtatcggat ccaacgctcc ctccagttgc      5220
     tagcagataa cggctgtcac gtttcttttc tgtgggtccc tggccacgtg ggtgtgcccg      5280
     ggaatgagac cgccgacata gcagccaagg cagcagctct tttgcctcgc atggctactt      5340
     tttgcgtccc atcagacgat gttcaacggg ctcttcgccg gwgtattgtg tcgtcctggc      5400
     acagtkcgtg gttctcactc cacgacaata aattgagaac tgtaaaaccg atcccgaccg      5460
     cttggaggac ctcctcacgc ccctctcggc gagaggaggt catcctggcc cggttgcgga      5520
     tcggtcactg ccgwttcagc caccgtcatt tgctaaccgc cgaccctgca ccgctgtgct      5580
     cctgcggtga attgctgacg gtgcgacatg ttttactgtc ttgtcctaat tttaatcatc      5640
     tccgtgtagc ccttaacttg ccgtctactc tggaggaact tttagctgat gacacacgag      5700
     cagctgctcg agttttgcgt tttatcaaca tggccaattt atcaaaggat atttaaccct      5760
     tctaattgtt tttatctctc gtttttagct ttctcttgat actctatctg gcagttatca      5820
     atttttttcg agatctagcg aatctctgtt ccgatctggg cgctaatgac ctgagaagtt      5880
     gtgcgcccta aaacaacaaa aaaaaaa                                          5907
//
ID   Nimb-2_AAe  repbase;    DNA;    INV; 6134 BP.
XX
AC   .
XX
DT   14-OCT-2010 (Rel. 15.10, Created)
DT   14-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Nimb clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; I_Ele6;
KW   Nimb-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6134
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6134
RA   Kojima K.K. and Jurka J.;
RT   "Nimb clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (14-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as I_Ele6.
CC   [2] Consensus update and re-classification. This consensus is
CC   generated from 15 sequences with >98% identity, and ~100%
CC   identical to the original sequence in [1]. It is classified as
CC   Nimb in the RTclass1, thus renamed.
XX
FH   Key           Location/Qualifiers
FT   CDS           630..2009
FT                 /product="Nimb-2_AAe_1p"
FT                 /translation="MATAISSLDPPWGGHSKHGADRNDRTIPVWMDRHGMH
FT                 GQRIILSLRAAEGENLPENPFILSKSINQVCGGNVEAANTEEKDTKYVLTT
FT                 RSVNQAQKLLKMKQLIDGTKVEVVLHPKLNVRNCVITCRAAIKMTEENLLE
FT                 ELAPQGISKVRRITRYENGQKVNTATLVLTVNGTVVPEYINVGLLRVPTRL
FT                 FYPAPMLCFNCYSYGHTKMRCQNTPVCKVCSGTHTLGKDVSCTQQPACKNC
FT                 KDSHSPASKKCPLYMKEEEIIKIKVESGVSFAEARKEYQRMHGDRSYSAVT
FT                 GAQARIQDIRKENEKDVEIRKLKEELANLKEVMSQKSEKEKEDETVKLREE
FT                 VIQLRKIIDDFKNGPAKQQMDTEERNEFSISEEEMSNAESQSVNNDNESEG
FT                 YAPVAKAVRRKSKRTLAKSVKTVREKEGDDTDRSRSSRSGHEPINKEKSNS
FT                 SQKKRGRPPKHRDDQ"
FT   CDS           1897..6060
FT                 /product="Nimb-2_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MTPTEAEVAEADMSQSTRKSQTLAKRSEEGHPNIEMT
FT                 SERNMLNDGNNDMDRSNGNGTENDICDEGRSETVSWLGLDEEKVVSPLFRR
FT                 GENSPRNESEDVTLPPVLCQLPRSSANYAATNEAQLRNGTTQASRIRNQAT
FT                 KLQPAILSWNIQGIQTGRQDLDLIIKDRKPLVICLQETMCSQRTQPRITGY
FT                 TIYNRPRPNCQRASGGVLIAVKNGIDNVEIEMETTLEAIKVNIGPPLNFSI
FT                 INVYFPPGANLNISEVEALFAGPNPVLLVGDINAHHPVWGSSFSNKRGKEL
FT                 EEVFDKNDLVILNSGEPTYYNQTTGKGSCIDVAVCSTHLAGNLEWEVLGDS
FT                 YGSDHMPTLICNPRETQENPTRPKWKIQEADWEQYQRIVDFPLIGDPEEQM
FT                 KGITSGIISAAEQSIPRTKGAPSRRVVPWWNDEVHVAVKKRRTALRRMKSA
FT                 PSDERREELARDFKTARREARQVIKSAKEESWKQFVSSFNVHTSVKDMWNK
FT                 YRSLQGRCRQACIGGIKYEGREETTSVGIAEAIAEAFCSVSSDTSYSEHFR
FT                 DVKQQTESNPFLMFDAPEEEYNKDFSMYELDEALESLKDSAPGEDNVHYGM
FT                 LSNLPLDCKYKLLETYNKLWQQSVYPVEWTKSIVIPIYKGKGDRTNPLNYR
FT                 PIYLNSCVAKILEKMVNSRLIFILETKKLLHKYQYGFRKAKSTTDHLVELE
FT                 GTIREHLNKGHYAQAVFLDISKAYDTTWRRLILEKLKFWKIGGHLLRFIER
FT                 SLACRTFRVLANGTLSSEKKMENGLCQGSVLSVTLFLVAINTIVEKLPGEV
FT                 KCLIYADDVVIIYGGNDFEKNEEILQNALNTISDWQQRTGFNVSAEKCATV
FT                 TFKTARARKVPLTSSLTINGSKIPKEKTFKCLGVWFDQSLRFREHVENIRA
FT                 SCQQRMKILKCVASSSWGGDRETICKLYKATILEKMLYAAPLISSVSKDIL
FT                 KKLEVVHNAGMRAISGAFRSSPSESIRAEAGMPSFNTYVDQRTALYAVKLK
FT                 ALDPQIIEETCETTSSEDESQETTTYESSSGEEWGSVKPVPELTIRERGGH
FT                 LLQELEVQVPLLNIFTLPSCAPWKRKKILVDKTLYTAMRRKQPEIMLRKLF
FT                 NERRVTKYRVHKTLYTDGSKMSNKCGYSVVSDNMSIRKRIYDESSIYGAES
FT                 LAAKEAIMLVANEEGAGAYLICTDSLSVVTCLESSKVKSLWKDQMLEIYTQ
FT                 CLQNRKEVTFFWVPSHIGIEGNEKADREAKLALEQRIDTSIALDYKEMKKI
FT                 LNNKIIIKWQYEWGKIRENKLREVKDSVIPYKTRGKTRRENVVLTRIRIGH
FT                 TVLTHKHLFERMAAPMCQWCNELLTVKHLLVECISLDEERKKVGLPISLRE
FT                 ILADDEERIESVICYLKNINVYNSL"
XX
SQ   Sequence 6134 BP; 2175 A; 1110 C; 1443 G; 1406 T; 0 other;
     gagtttggtt ggtaacccta ttacagacaa gtttgtttgc atatgaagtg aattttctaa        60
     gaactttttc gaagcgttat aagtgacaga aaattaagct tccaagaata ccatttgtac       120
     gagagttcag agagtcagta gagcgcggag aatattacta gcattctgta gtttgcttat       180
     ttcgactgtt tcaatagtgt caataaaagc aaaacaccag tccagtttgc tgtagacaat       240
     tgtacacaag tcgactagca agcgcacgct tgcgtgctac atagcacgaa gaagcgctgc       300
     ccagtgcatt gccacctgct aggcgcaatc ggcagcttca ccagaaacaa atctctccgt       360
     ggtttgtgga gaaaccactg tttgcgtggt ggagatcgta gtgactaaga actaccaagc       420
     gtccccatcg aaattgattt tctgtgaacg cgcgcttaaa ctattcacct ggaccttcaa       480
     cccttgggtg atatagtagt tctaggtaaa agggtagtcg ttacttgcta cggcaagaac       540
     gcagttggga gtgtagaata ttcaatttga gtgaccagca aacataagct gacagaagga       600
     agctagctaa ctcttcgctg ttggccaata tggccacagc tatttcgtct ttggacccac       660
     cctggggtgg ccattcgaag catggagcgg atagaaatga tcgaaccata ccagtatgga       720
     tggaccgaca cggaatgcac gggcaacgca ttattttgtc tctacgagct gctgaaggag       780
     aaaacttgcc agaaaatcct ttcattctca gtaagtctat caatcaagtc tgtggaggaa       840
     acgttgaagc tgccaacacc gaagaaaagg atacaaagta tgtactaacg accaggagtg       900
     tgaatcaagc gcaaaagctg ctgaagatga aacaattgat cgacggaact aaggttgagg       960
     tagtcttaca cccaaagctg aacgttagaa actgcgttat cacctgcaga gcggccatca      1020
     aaatgactga agagaaccta ctggaggagt tggcaccaca aggtattagc aaggtgagaa      1080
     gaattacccg ttacgaaaat ggacaaaaag tgaatactgc gacactagta ctgaccgtca      1140
     atggaacggt agtaccggag tacatcaacg tcggactttt gagagtgcca acacgattgt      1200
     tctatccggc accaatgtta tgcttcaact gctactccta cggacacaca aaaatgagat      1260
     gccagaacac acccgtgtgc aaagtatgct ccggtactca tacacttgga aaagatgtaa      1320
     gttgtaccca acagcctgca tgcaaaaact gcaaggatag tcattcaccg gcgagtaaga      1380
     aatgtccatt gtacatgaag gaggaggaaa ttataaaaat aaaagttgaa agtggtgtgt      1440
     cctttgccga agccaggaaa gaatatcaac gaatgcatgg agatcgttcg tattctgctg      1500
     tgactggcgc gcaggcgagg attcaagaca ttaggaaaga aaacgaaaag gacgtggaaa      1560
     ttcgaaaact caaggaagaa ttagcaaacc tcaaggaagt gatgtcacaa aaatctgaaa      1620
     aggaaaagga ggatgaaaca gttaaactgc gcgaagaagt aattcaactc agaaagataa      1680
     ttgacgactt caagaacggt ccagcaaagc aacaaatgga tactgaggag cgaaatgaat      1740
     tttccatcag tgaagaagaa atgtctaatg cagagtcgca atctgtgaac aacgataacg      1800
     agagtgaagg atatgcacca gttgctaaag ctgttcgtag gaaatcaaaa agaacgttag      1860
     caaaaagtgt gaaaactgta agagaaaagg aaggagatga caccgaccga agcagaagta      1920
     gcagaagcgg acatgagcca atcaacaagg aaaagtcaaa ctctagccaa aagaagcgag      1980
     gaaggccacc caaacataga gatgaccagt gaaaggaata tgctaaatga cggaaataac      2040
     gatatggacc gaagcaacgg aaatggcacc gagaacgaca tctgtgatga aggaaggagc      2100
     gaaacggtaa gttggttggg gttagatgaa gagaaagtag tctccccact cttcagaaga      2160
     ggagagaata gtccgaggaa cgagagcgag gacgttacac tcccacctgt gctctgtcag      2220
     ttgcctcgga gttctgccaa ctacgccgca acgaatgaag cacaattaag aaatggcacc      2280
     acccaagcaa gcaggattcg aaatcaagca actaagctac aacccgcaat attatcatgg      2340
     aacatccaag gaatacagac aggaagacaa gatttggacc ttataataaa ggatagaaaa      2400
     ccactagtga tatgtttgca agaaacaatg tgctctcaac gcactcagcc tcggattaca      2460
     ggatacacca tttataaccg accacggcct aactgtcaac gagcgtctgg aggagtactg      2520
     atcgcagtta agaacggcat tgacaacgta gaaatcgaaa tggagaccac gttagaagcc      2580
     attaaagtaa atattggtcc tcctttgaat ttctccatca taaatgtcta cttcccaccc      2640
     ggagcaaacc ttaatatatc ggaagttgaa gcactttttg cgggcccaaa tcctgtatta      2700
     ctagtgggag acataaatgc tcatcatcca gtatggggtt ccagttttag caacaaaaga      2760
     gggaaagaat tagaagaagt atttgacaaa aacgacttag tgattcttaa cagcggagaa      2820
     ccaacatact acaatcaaac aacaggtaaa ggatcatgca tcgacgtagc agtctgttct      2880
     acacatctgg ccggaaattt ggagtgggaa gtcctaggag atagctacgg tagtgatcat      2940
     atgccaactc taatctgtaa cccaagagaa acgcaagaga atccaaccag acctaaatgg      3000
     aaaattcagg aagcggactg ggagcagtat caacgtatcg ttgatttccc tttaataggg      3060
     gacccagaag aacaaatgaa gggaattact tcgggaataa tatctgcagc tgagcaatcg      3120
     ataccacgaa cgaaaggagc accgtcgcgt agagtagtcc catggtggaa cgacgaagtc      3180
     catgttgcgg taaagaaacg acgaacggca ttaagaagaa tgaaatcagc accaagcgac      3240
     gaacgtagag aagagcttgc cagagacttc aaaacagcta gacgtgaagc acgccaagtg      3300
     atcaaaagtg ctaaagaaga gtcgtggaaa cagtttgtgt cttctttcaa tgtgcatact      3360
     tcagttaaag atatgtggaa caaatacagg tcgctccagg gaagatgtag gcaagcttgc      3420
     attggaggaa tcaaatatga aggtcgcgaa gaaacgacaa gtgtgggaat agctgaagca      3480
     attgcagaag ccttttgcag tgtctctagt gatacctcgt acagtgaaca tttccgtgat      3540
     gttaaacagc aaactgaaag taaccctttt cttatgttcg atgcaccgga agaagagtac      3600
     aataaagact tttcaatgta tgaattggat gaagcactgg agagtctgaa ggactctgcc      3660
     ccaggtgaag ataatgtgca ttatggaatg ttgagtaact taccgctaga ttgcaaatac      3720
     aagttgctgg agacttataa caagttatgg caacaatcgg tgtaccctgt agaatggact      3780
     aagtcaattg tgatcccaat atacaagggt aaaggggata gaacaaatcc actgaactat      3840
     aggccaattt atttaaatag ttgtgttgca aaaattttgg aaaaaatggt gaacagtcgt      3900
     ttaattttca ttttggaaac caaaaagtta ttgcacaaat atcagtatgg attcagaaag      3960
     gcgaaatcca ccacagacca tttagtggaa ttggaaggaa caattagaga acatcttaat      4020
     aaaggacact atgctcaggc tgttttcctg gatatatcga aagcctatga cacaacgtgg      4080
     aggaggctca tactggaaaa gttgaagttc tggaaaatag gtggacatct gctcagattc      4140
     atagaacgat ctctggcatg tcgaaccttt cgtgtgctcg caaacggtac gctttctagt      4200
     gaaaagaaaa tggaaaacgg attgtgccag gggtctgtgc tcagcgttac actctttctg      4260
     gtggccatta acactattgt agaaaaacta cctggtgaag taaagtgttt aatctacgct      4320
     gatgatgtcg ttatcattta cggtggcaat gactttgaga aaaatgaaga aatactacaa      4380
     aatgcgttga acacaataag tgactggcaa caaagaactg gattcaacgt gtccgcggaa      4440
     aaatgtgcta cagtgacttt taaaacagct agagctagaa aagtgcctct gacaagctcc      4500
     ctgacaataa atggatcgaa aataccgaag gaaaaaacat tcaagtgttt gggtgtttgg      4560
     tttgatcaaa gtttaaggtt cagagaacat gttgagaata ttagagcatc gtgtcagcag      4620
     agaatgaaaa tattaaaatg tgtagctagt agctcatggg gtggtgatcg agaaacaata      4680
     tgtaagctgt acaaggcgac gattctcgag aagatgttgt acgctgcacc tctgatctct      4740
     tcagtgtcca aagatatttt gaaaaaactt gaagtggtac acaatgctgg aatgagggct      4800
     ataagcggtg catttcgttc aagtccatcg gaaagcataa gggctgaagc aggaatgcca      4860
     agcttcaata catacgtgga tcaacggaca gccttgtatg cagtgaaact gaaagctctg      4920
     gatccccaga taatcgaaga aacatgtgaa acaacaagca gcgaagatga atcacaagaa      4980
     acaacaacat atgaaagcag ttcaggagaa gagtggggat cagtgaaacc ggtaccagaa      5040
     ctgacaatca gagaaagagg aggccatctg ctacaggagc ttgaagttca ggttccttta      5100
     cttaacattt ttactctacc atcttgtgca ccatggaaac gtaagaaaat tctcgtggac      5160
     aagaccctgt atacagcaat gcgtcgtaaa caacctgaaa tcatgttgcg gaagctcttc      5220
     aatgaaagaa gagtaacaaa atacagggtt cataaaacct tatacacaga tggttcaaaa      5280
     atgtccaata aatgtgggta tagtgtagtc agtgataata tgtcaattcg taaaaggata      5340
     tatgatgaga gtagtattta tggagcagaa agtctagctg caaaagaggc aataatgttg      5400
     gtagcaaatg aagaaggggc gggtgcatat ttaatttgta ctgattcact aagtgttgta      5460
     acatgtttgg agagtagtaa agttaaaagt ctatggaaag atcaaatgct tgagatttac      5520
     actcaatgtt tacaaaatag aaaagaggtc acattctttt gggtaccgag tcatataggt      5580
     attgaaggta acgagaaagc ggatcgagaa gcgaagttag ccttagaaca aagaatagac      5640
     accagcatag cattggacta taaagaaatg aagaaaattt taaacaataa aataataatt      5700
     aaatggcaat acgaatgggg aaagattagg gaaaacaaat tacgagaagt aaaagactcg      5760
     gtcatcccgt acaaaactag aggcaagact cggagagaaa atgtagtcct tactagaata      5820
     cgtatcggtc atacggtcct aactcacaaa catctattcg aacgaatggc agcaccaatg      5880
     tgccagtggt gtaacgaatt gctcactgtt aaacacttat tagttgaatg tataagttta      5940
     gacgaagaaa ggaaaaaagt aggattgccg ataagtttga gggagatttt agcagatgat      6000
     gaagaaagaa ttgaatcagt tatatgttat ctgaaaaata tcaatgtata caatagttta      6060
     tagaaggttc caccatacac aagacctgaa tgacaataaa gttaaagggt ctataataaa      6120
     aaaaaaaaaa aaaa                                                        6134
//
ID   Nimb-2_BTa  repbase;    DNA;    INV; 5576 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5576
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 727-727 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           204..1802
FT                 /product="Nimb-2_BTa_1p"
FT                 /translation="MKKGKVKNFKTAVSCIVSQNSTNESSPTSSQLSPLSN
FT                 DVTPSISTSQNNNITHAPATNLTGDQNNNNNLIKPNLSFAHAVADTAPSIT
FT                 KEHAVIIPAHDSIPLLEYLQQISKFVSPSEILYASRISFNRICIYFKSRKS
FT                 VDETAQKIIHTKEGPLVIRRMINPDVRLIFSNVIPTLPNQKLINAVSEFVT
FT                 PTSQMQSVSTGLKDPMFAHVLSFRRQIYVKREAKNIQLPPSVIINHNGEEI
FT                 KVFLTFGDTKPINTTEKQTSRTGANINTRIANIQSETVKTRELEISSKNPS
FT                 HSSTSQTIPPQQKSPQTHPVDEPQSDAPQTEVSSSNVSHSNNTDLPSTGVL
FT                 HKDLQHNASHIVQNPRDSTEDLSSDRIXNXQEEETNLIMDTTGEISXTADV
FT                 PKKRKSSSSPESVEPRKKXNSKKQNKKQLTTQQEIXSFSESSDEEPFTSHC
FT                 TLQHAISEAVEKHNFEIESEVLLLLLEEIKGKRKPVPMIRKYTDDFQGFIK
FT                 VLSSSITYSLPPEIKGRLSRLXTTLHAASDXRSTKFL"
FT   CDS           1812..5498
FT                 /product="Nimb-2_BTa_2p"
FT                 /translation="MPTLLQWNXNSAIQKRAELRKLIRDHDPFAITLQETQ
FT                 LTQKHMYNIKGYQIHRKDFLEGNRACNGVAILVKDCYQHKLLPLNTNLQAV
FT                 AIQVTLNVLMTICSIYIPPNAKITMQDIENIHNQLPAPYILCGDFNAHNXL
FT                 WGSNHSSFTGKIIESFIDNSNTFLLNDGSPTHLSXATGSFSAIDLSLCSLN
FT                 VAPTITWRVHDDLCSSDHFPIFIKIGPETPRTKKKKWVVNKADWELFKNSI
FT                 NVNPENNQSPQDMLSHLSDQMLHAXAVSIPQTSTEISKFPVPWWNDQCXDS
FT                 IRERQKLLRTYKKHPXIENLIQYKKAKAIARRTVQSSRASSWKTFVQSINS
FT                 HTTCGQVWSQIKKLTGSPDQTHIPSLESKTGEFLTDPQQIAEELAEHFSSV
FT                 SSDIHYSEKFYQHKIEAEQEKLDFSSDNQEPYNQKFSLKELNKAICALKSS
FT                 APGPDEIHNLMIKNLPSYCKEYLLKIFNLFWSSNQFPTEWLESTIIPTAKP
FT                 GKDKTKPSSYRPISLTSTLCKLYESMINKRLIYTLNQKSAWNNIQSGARKN
FT                 RSTYDHLIKIQSTIQEGFLKRLDTYAIFFDIEKAYDTTWRYNILKNLHKWG
FT                 FRGHLPFMITNFLKRRLFRVRIGNIYSEIHELLNGIPQGSVLSCTLFAIAI
FT                 DSILECIPKSVETSLFMDDFCIYFNVKNPRISTKLFRICVQKLQDWADKTG
FT                 FSFSPQKTVGMIFSRKKKLPKPPKIFLSGNQIFFKTTVTYLGLIFDQKMTW
FT                 ADHISNLVAKCKRRMNILKYLSNTTWGSDRITLLTLYRSLIRSTIDYGCFI
FT                 YQSAADFHLRKLDSIHTSSLRIVLGAFRTSPSLSICAEAGEPPLYWRRQRL
FT                 LAGYIAKVMSLPNHPTYSSLFSKQLEDTATVKTISKCVTTMLDDFKSKHNI
FT                 KQLLTTRCEIPPFPPWFQTMINIDTSLSSVKKNDISVQQQQTSFSNFLEKY
FT                 DGYRRLYTDGSKTENGAGCAFVELEENMSFLQILSPLSSVLTTELYAILEA
FT                 VKYTKTITFSQPQKFLLMSDSLSGLTAIENQGDNPLLFDISAQLQNSPHNI
FT                 IMAWIPGHSGIIGNETADIIAKSCCNPNSPPLHTHFVPPQDLKKALQSHIN
FT                 DSWEXYWMNNDKNLLQRRPKPYDNTSFNKHRTCEVQIARLRIGHTFFSHSH
FT                 LISKSPVPLCSLCQHSPLTIDHILLSCPKTYATRIKIRSSLPLNXHPLCSD
FT                 SPMVVTEILKLFKKLNLKI"
XX
SQ   Sequence 5576 BP; 1820 A; 1279 C; 857 G; 1604 T; 16 other;
     gggacatcaa ttcttacacg agtttgattt gctcttcggt tttttagtat tttcagataa        60
     ttatgtatgc tttgtgcccg catttttgta gaaccgtgtt cggtttttga agccgcttct       120
     tttcatccat ttacttcggc aattatgtgg agtgactgaa agatctcttg tatttttgaa       180
     ctaattgctt tccaagctcc attatgaaga agggaaaagt gaaaaacttt aaaacagctg       240
     tttcatgcat tgtttcccaa aattccacga atgagtcgtc tccaacgtcc tctcagctga       300
     gtcctttgtc caatgatgta actccttcaa tctctacctc tcagaataac aacatcaccc       360
     atgcccctgc taccaactta acaggtgatc aaaataacaa taataacctt atcaaaccca       420
     acctctcttt tgctcatgct gttgccgata cagccccctc aattactaaa gaacacgctg       480
     taataattcc agcccatgat tccatccctc ttttggagta ccttcaacaa attagtaaat       540
     tcgtctctcc tagtgagatc ttgtatgcat ctcggatttc ctttaataga atttgtatct       600
     atttcaagtc aaggaaatcc gtagatgaaa ctgctcaaaa gatcatacac acgaaagaag       660
     gcccattggt tatccgaaga atgattaatc ctgatgtcag attaatattt tctaatgtca       720
     ttcctacatt acctaatcaa aaactcatca acgctgtctc tgaatttgtt acaccaacct       780
     ctcagatgca gagcgtttct acaggtctta aagatcctat gtttgctcat gttctgtctt       840
     ttcgtagaca aatttatgtc aaaagggagg caaaaaatat ccagctcccc ccctcagtaa       900
     tcattaacca taatggcgaa gaaataaagg tattcctaac ttttggagat acaaaaccaa       960
     taaacacgac tgaaaaacaa acatcgcgaa ctggcgcaaa catcaatact agaattgcta      1020
     atattcaatc tgaaacagtc aaaacgcggg aattggagat ttcgtctaaa aatccttctc      1080
     atagtagtac ttctcaaacc atcccgcctc agcaaaaatc tcctcaaact catccagttg      1140
     atgaacccca atctgatgct cctcaaacag aggtttcctc ctcaaacgtc tcgcattcca      1200
     ataatactga tctcccctcc acgggtgttc tccacaaaga tttacaacac aatgcttctc      1260
     acattgttca gaaccccaga gattcaaccg aggatttatc ttcggacaga atttmaaata      1320
     ktcaagaaga ggaaacaaat ttaattatgg atactactgg cgagatttcg cmaactgcag      1380
     atgttcccaa gaagagaaaa tctagctcat ccccagaatc cgtcgaaccg cggaaaaaaw      1440
     ttaactctaa aaaacaaaat aagaaacaat tgaccactca acaggaaata gaktcattct      1500
     ctgaatcttc tgatgaggaa ccttttacct cacactgcac cttgcaacat gccatctcgg      1560
     aagctgttga gaagcataac tttgagatcg aatcggaggt gcttttactc ctgctggaag      1620
     aaataaaagg gaagagaaag cctgttccca tgattagaaa atatacagat gatttccagg      1680
     gwttcataaa agttctttca agctcaatca cttattccct tcctccagaa attaaaggaa      1740
     gattatctcg tcttawtacc acattacatg ctgcatcaga twaaaggtca acaaaatttt      1800
     tgtaaagttc catgccaaca ttactccagt ggaattkaaa cagcgctatc cagaagcgcg      1860
     ctgaattacg aaagcttata agagaccatg atccattcgc tatcacttta caagaaaccc      1920
     agcttactca aaaacacatg tacaatatta aaggctacca aatacacagg aaagattttc      1980
     ttgaaggaaa cagggcttgt aatggtgttg cgattttagt aaaagactgt tatcagcaca      2040
     agctgcttcc tctgaacacc aatctccaag cagttgcaat tcaggttact ctcaatgtgc      2100
     tgatgacaat ttgctctatt tacattccgc ctaatgcaaa aataaccatg caagacatag      2160
     aaaacatcca taaccaactc cctgctccat acatactttg cggagacttc aatgcccaca      2220
     attwtctgtg gggctcaaac cattcgagtt ttacaggaaa aattattgaa tcttttatag      2280
     ataacagcaa cacattttta cttaatgatg gctcgcccac ccacctctcc wctgccacag      2340
     gctctttctc tgccattgat ctctctctct gctctcttaa tgttgccccc acaataacat      2400
     ggagggttca tgatgattta tgttcatcag atcattttcc cattttcata aaaataggtc      2460
     ctgagacacc tagaaccaag aagaaaaaat gggtggtaaa taaagctgat tgggaattgt      2520
     tcaagaattc gattaatgta aaccctgaga ataatcaaag ccctcaagat atgctctctc      2580
     atctctctga tcaaatgcta cacgctsctg ccgtctccat tcctcaaact tccacagaaa      2640
     tttcaaaatt tcccgttccc tggtggaacg atcagtgtag wgactcaatt agagagaggc      2700
     aaaaactcct tcgaacctat aaaaaacatc ctamaattga aaatttaatt caatacaaaa      2760
     aagctaaagc aatagctcgc cgaacagttc aatctagcag agcctcaagt tggaaaactt      2820
     ttgtccagtc tataaattca catacaactt gtggtcaagt gtggtctcaa attaaaaaac      2880
     tcactggatc acctgaccag acccatattc catctctaga atctaaaacg ggagaatttc      2940
     tgacggaccc acagcaaata gctgaggaac ttgccgaaca ttttagctca gtaagtagcg      3000
     atattcacta ttctgaaaaa ttctaccaac ataaaattga ggcagagcag gaaaaattag      3060
     atttttcttc agacaatcaa gaaccttaca atcagaaatt ttctttaaag gaactaaata      3120
     aagctatctg tgctttgaag agctcagcgc ctggaccaga tgagatacat aatcttatga      3180
     taaaaaatct cccttcctat tgcaaagaat atcttttaaa aatcttcaat ctcttttgga      3240
     gctcaaacca gttcccaaca gaatggcttg aatcaactat tattccgact gcaaaacctg      3300
     gaaaagataa gaccaaacct tccagttata ggccaatttc gcttacctcc accctttgta      3360
     aactgtatga atctatgatt aataagaggc tcatctacac tcttaatcaa aaatctgctt      3420
     ggaataacat ccagtctgga gctcggaaaa atcggtctac ttacgatcac ctcattaaaa      3480
     ttcaaagtac tattcaggaa ggttttctta aaagattaga tacatacgcc attttctttg      3540
     acatagagaa agcgtatgat accacttggc gatacaacat cctcaaaaat ctacataaat      3600
     ggggtttccg aggccacctt ccttttatga tcacaaactt cttgaaacgt agacttttta      3660
     gagtaagaat aggaaatatc tattctgaaa ttcacgaatt attgaatgga attcctcagg      3720
     gaagtgtttt gagttgcacg ctttttgcca ttgcaattga ctcaatctta gaatgcattc      3780
     caaagtcagt cgaaacatct ctattcatgg acgatttctg tatttacttc aatgttaaaa      3840
     accctagaat atccacaaaa ctcttccgaa tctgtgtaca aaaacttcaa gattgggcag      3900
     acaaaacagg tttcagcttt tcacctcaga agacagttgg aatgatcttt agcaggaaga      3960
     aaaagctacc aaaacccccg aaaatttttc tctctggtaa tcaaatcttt ttcaagacaa      4020
     cagttacgta cttaggacta atttttgatc aaaaaatgac ttgggctgac cacatttcaa      4080
     atcttgtggc taaatgtaaa cgaagaatga acatattaaa gtacctttca aatacaacct      4140
     ggggaagcga tagaatcact cttctcacct tatatagaag ccttatcaga tcaaccatag      4200
     attatggatg tttcatctac cagagtgcag cggattttca tttgagaaaa ttagactcta      4260
     ttcacacttc atcacttcgc atagttctgg gggcatttag aacaagcccc tctctgtcca      4320
     tttgcgcaga agcaggggaa ccacctctct attggagacg ccaaagacta cttgcaggct      4380
     atatcgccaa ggttatgagt ctccctaatc atcccactta ttcttctctt ttttccaaac      4440
     aattagagga tacggccact gttaaaacca tttcaaaatg tgtcactaca atgcttgatg      4500
     atttcaagtc aaaacataac atcaaacagt tgctaacaac tagatgtgaa attcctcctt      4560
     ttccaccctg gtttcagact atgatcaata tagacacctc tttaagctct gtcaagaaaa      4620
     atgatattag tgtccaacag caacaaacta gtttttccaa cttcctagaa aagtatgatg      4680
     gttataggcg gctgtacacg gatggatcaa agacagaaaa tggtgctggc tgtgcttttg      4740
     ttgaacttga agaaaatatg tcctttttac aaattctctc tcctttgtct tctgttctta      4800
     caacagaact ctatgcaatt ctggaagccg tcaagtacac taaaacgata actttctcgc      4860
     aacctcaaaa atttttgcta atgtccgact ccctctctgg tcttacagcc atagaaaatc      4920
     aaggagataa ccctcttctc tttgacattt ctgctcaact tcaaaattca ccacataaca      4980
     tcattatggc ttggatcccg ggtcattcgg gaatcatcgg taatgaaaca gcggatatta      5040
     ttgccaaatc ttgttgtaat ccaaatagtc cccctctaca cacacatttc gttcctccac      5100
     aagatttgaa aaaagcgctc cagtctcaca tcaatgattc ctgggaakac tactggatga      5160
     acaacgacaa aaacttactt caaagaagac ctaagccata tgataacacc tccttcaaca      5220
     aacaccgcac ctgcgaagtc caaattgcga gactgcgaat cggccatact tttttctctc      5280
     attctcattt aatctcaaaa tctccagttc ctttatgctc tctttgtcaa cactcccccc      5340
     ttacaatcga ccatatttta ctttcttgcc ctaaaaccta tgccacacgt atcaaaattc      5400
     gaagttccct ccctcttaac atscaccctt tgtgttcaga tagtccaatg gtagtaacag      5460
     aaattttaaa actcttcaag aaactaaatt taaaaattta aaattgccta gtccccgacg      5520
     taaatagcct agatgctgat cgtcgttaaa taaaattaac taactaacta actaac          5576
//
ID   Nimb-2_CQ   repbase;    DNA;    INV; 5981 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Nimb non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5981
RA   Kojima K.K. and Jurka J.;
RT   "Nimb non-LTR retrotransposons from the southern house
RT   mosquito.";
RL   Repbase Reports 11(1), 582-582 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           771..2078
FT                 /product="Nimb-2_CQ_1p"
FT                 /translation="MAALNPLPPGDPPDGNAGPSGTNVNARTMPEWMDRQG
FT                 MFGQRIVLLLQPTGTSMLPNNPFVIGKSIEKTCGKIESANTEENGTKYALK
FT                 TRSVDQARKLLAMTKLIDGTKVEVVTHPRQNVCRCVVVCREAIELSEDELV
FT                 TELSAQGVVNARRFTKREGNNRVNTATVCLTLNGTVVPKHIWFGPLRITTR
FT                 LFYPSPMLCFNCSDYGHTSKNCKKEAVCFNCSLQHTVEPSEGGRCILDPYC
FT                 KHCKGAHPATSKECPKYKKEVAIIKIQVETGVTFAEARREYEKRNQAHGLP
FT                 THAEVVGAQKRLEAIGKDNEKDNEIRLLKEEIEKLKNTAMDKNKDEVITSL
FT                 RYELEQTKRLSSALMKKLRENKFAKNDSEIESDKDSSEKEGSPKQAKFAKG
FT                 QAGKLQDNTSSQPEKNPRRGRGRPRKTPTLEPGKFDAEMHST"
FT   CDS           2084..5908
FT                 /product="Nimb-2_CQ_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MDLSTTNKTKDKEPAMNKNYSNIISWNTQGLRTSKPN
FT                 LKILCSKINPSVLCLQETMCSSKDQANINGYSIYYRPRAGGDRAAGGVLVG
FT                 VKPELDSEEIDLDTNLEAIAVKVGPPFNLTIINTYLPPGQAIQASEIVHLI
FT                 NQVPQPRLLVGDINAHHPLWGSETFSARGLMFEEVLNECNLVVLNKTDPTH
FT                 ISVATGTLTSIDVACCSTEIIDQLDFSVLQDAYGSDHLPLLLTLPDTAHAI
FT                 RTRPKWKIEEADWETFQTTVQFPLMPTATQQISSITQKILEAAEQTIPKTT
FT                 GMVNKRAVPWWNQEVASAVKSRKKALRALQSAKRNNLENQEALAAEFRAAR
FT                 SHARKVIQEAQRTSWINFVNDFTVQTPVKEVWENFRRIQGKRKTNRISAIT
FT                 AEGGTVSKDEDIAEALASSFASISSNDAYSPEFRAFKDQVEQTPLSIPADT
FT                 SAEYNKPFLFTEFEEATAGLRGSSPGPDTVHYSMIVKLPLDCKRQLLDAYN
FT                 RLWLGSVYPPEWTESLVIPIFKNCGEKANPRNYRPIFLNSCLGKVFERMVN
FT                 NRLVHIIETRRLLHPHQFAFRKGKTTVDHLAELEKVVRAAWNKKEYVQGIF
FT                 LDVTKAYDTTWRRLVLNQLRDWNIEGLMLKFLDRMLENRSFRVFVNGQLSQ
FT                 SKIMETGLCQGSVLSVTLFLVAINTLVARMPPSITTLLYADDVVLLASGRD
FT                 VEEVENDLQAALKAVECWQSSTGFKISAEKSATVIFRSYGTRKPPSRAALE
FT                 LNGTLIPTKKQHRCLGVILDQHLPFKTHCEEVKAACRQRVQLIRCVARRSW
FT                 GGDRKTLIKLYRATVLEKILYAAPITAAVSDNVLKILEPTHNAGLRAICGA
FT                 FRTSPVDSLQAETGIPSLRVFFEQRTAIYAARKAAISAQSRTQPAEDDSQS
FT                 AGSSTESSYDSNSSGEEWNSTRHRGPLRGVETAETRGKAILEELELPLPEL
FT                 KIFTLPLCPPWERRRIRIDKTLLEAERAGATSTQLKELFVSRRNTEYRLCE
FT                 TIFTDGSKKDGRVGYAMVRGDLVVRRRISDLSSIFAAECGAITEALRWIIG
FT                 QNRVGTYLVCTDSLSAITALGKRKTKCRWKDEINILHNQAECNGTEIIYMW
FT                 VKSHVGIAGNEKADEEAKQSLNDRNIWDRSVEFKEFRTVIKKRTVWRWNAE
FT                 WSRKVGNKLREVKNSVLPYRDVFVGSRKEDVILTRLRIGHTLLTHQYLLEK
FT                 DSAPRCTRCNLALTVKHILAECPEFEEQRRRAGVPSNVREALADDRDMAKN
FT                 VLKFLKATDMYGKV"
XX
SQ   Sequence 5981 BP; 1851 A; 1393 C; 1530 G; 1206 T; 1 other;
     acgaggtttg actgtaaagg tctatagtta taccaagtct tgagtctcgg attagtatcg        60
     cttttctagc gtaaatcgga tcggttttcg aatagttttc gtatcggtcg aagcataagt       120
     gaacggacaa tcggtggaat atcgagtaca gcagcaaaac tacggattag tgcgaatatc       180
     gagcagaatc tggattgttg atattcgaac cgaacagacg acggagcaag tgctagatca       240
     gcagagtggt gttaccaaga gagagagcga aagctagcac cgcaagcttg cctctttaaa       300
     cgtgcaggca agctttctac tgctacatct gctagcttct actggatctc catcgtcaac       360
     agctcgtttc attggaaacg cacctgtcgt ccgttggtgg agaaacgcac atcaactgaa       420
     ctgcagtata cggactacac tagcgtgtcc caaaaagtga gaagctgaaa tcgaactaca       480
     cggctggacc ttctaacgct tggtcgttgt agagtgaata gggtaaagcg tagtcgtctt       540
     ccgttccgac ggggccgcaa aacaggccac ctggacctta acccttgggt gggtctgaat       600
     tgaggtaaaa gggtagtcgt cacttgctta ggcggtgtcg caaaaccgat cacctggacc       660
     tttaaccctt gggtgaatct ggtgtgaagg tgaaagggta gtcgttcctt gttcagacaa       720
     gaacgcaacg ctgtactggt tctaaagtga gctgcaacgc tattgcggcc atggccgcgc       780
     tgaacccact ccctcccggg gatcctccgg atgggaatgc tggacctagt ggtacaaacg       840
     taaacgcgag gacaatgccg gaatggatgg atcgacaagg aatgtttggg caacgtattg       900
     ttctgctcct gcaaccgaca ggaacaagca tgctaccaaa caacccattc gtaatcggca       960
     aatcgatcga aaaaacctgc ggaaaaatcg agtcagcaaa cacggaagaa aacggtacaa      1020
     aatacgcact gaaaactcga agcgtcgatc aagcaagaaa gctgctggcg atgacgaagc      1080
     tcatagatgg taccaaagtg gaagtggtta cccaccccag acaaaacgta tgcaggtgcg      1140
     tcgtcgtttg cagagaagct atcgaactca gcgaggacga attggtcacg gaactttcgg      1200
     cacaaggagt ggtgaatgcg cgcagattca caaaacgaga gggtaataac agagtgaaca      1260
     ccgcaacagt ctgcctaact ctgaatggta ctgtggtccc caaacacatt tggtttggac      1320
     cgctcagaat aactacaagg ttgttctatc catcaccgat gctgtgcttt aactgcagtg      1380
     actatggaca cacaagcaag aactgtaaga aagaagccgt ttgcttcaac tgctccttgc      1440
     agcacaccgt tgagccgtcg gaaggtggac gatgcatttt ggacccatat tgcaagcact      1500
     gtaagggggc tcatccagct accagcaagg aatgccctaa gtacaaaaag gaggtggcaa      1560
     taatcaagat ccaggtagaa acgggagtca cgttcgcgga agcgagacga gagtatgaaa      1620
     agcgtaacca agcacatgga ttacccaccc acgctgaagt tgttggcgcc cagaaaagac      1680
     tggaagccat tggtaaagat aacgaaaagg acaacgagat tcgccttctc aaggaagaaa      1740
     ttgagaaatt gaagaacact gctatggaca aaaacaagga cgaagtcatc acttctctaa      1800
     ggtatgaact cgagcaaacc aagagactgt caagcgcctt gatgaagaag ttgcgcgaaa      1860
     acaaatttgc caaaaacgac agcgaaattg aatcggataa agacagctca gaaaaagaag      1920
     gatcgccaaa gcaagctaaa ttcgccaaag gacaagcagg aaaactgcag gacaacacca      1980
     gctcccagcc cgagaaaaac ccccgccgtg gtcgtggaag gccacggaaa actccaacac      2040
     ttgaaccagg aaagtttgat gcagaaatgc actccactta accatggact taagcacaac      2100
     aaacaaaacc aaggacaaag aaccagctat gaacaagaac tactcgaaca ttatttcatg      2160
     gaacacccaa ggacttagaa ccagtaaacc aaatttgaaa atactatgca gcaaaatcaa      2220
     cccatctgta ctatgcctcc aagaaaccat gtgctcatct aaggaccagg cgaacatcaa      2280
     cggctacagc atatactacc gaccgagagc tggtggcgac cgtgcagccg gaggagtttt      2340
     ggttggagtg aaacctgaac tggacagtga agaaatcgac ctggacacca acctggaagc      2400
     catcgctgtt aaggtaggtc ccccatttaa cctgaccatt atcaatacat atctgccacc      2460
     ggggcaagcc atacaagcct cggaaattgt acacctgata aaccaagtcc cccagccacg      2520
     cctactcgtg ggagatataa acgcccacca cccactgtgg ggatcggaaa cgttcagcgc      2580
     ccgaggacta atgttcgagg aagtattgaa cgaatgcaac ctggtggtcc tgaataaaac      2640
     agatccaacc cacattagtg ttgcgaccgg aactctcacg agtattgacg tggcatgctg      2700
     ctcaacagaa ataatagacc aactagattt ttctgtacta caagacgcct acggtagtga      2760
     ccatctacca ctattgctaa ctctccctga cacggcccat gccatccgaa cgcgacccaa      2820
     atggaagatc gaggaagcag actgggagac attccagaca acagtgcagt tccccctcat      2880
     gcctacagct acacaacaaa tctccagcat tacccagaaa atacttgaag cagcggaaca      2940
     aactataccg aaaacgacgg ggatggtgaa caagagggcg gtgccttggt ggaaccaaga      3000
     ggtggcctcc gctgtcaaga gcaggaagaa agccttgcgt gcactgcaat cagccaaacg      3060
     gaacaacttg gagaatcaag aggctcttgc agcagaattc agagcagccc gctctcatgc      3120
     acgcaaagtc atccaggaag cacaacggac ctcgtggatc aacttcgtca acgacttcac      3180
     agtgcaaaca cctgttaaag aagtgtggga gaacttccgc cggatccaag gcaagcgcaa      3240
     aacgaaccgt atcagtgcaa taacagccga aggaggtact gtgtctaaag atgaagatat      3300
     tgctgaggcg ctggctagct ctttcgcttc catctctagt aacgatgctt acagccccga      3360
     gtttcgcgca ttcaaggatc aggttgagca aactcctctg tcaatcccag ctgacacgag      3420
     tgctgagtac aacaagccct ttttattcac tgaatttgaa gaggcaacgg caggtttgcg      3480
     tggctcatca ccaggccctg acactgtcca ctattccatg atcgtaaagt taccgttgga      3540
     ttgcaaacga cagcttcttg acgcgtacaa ccggctgtgg ctcggttcag tatacccacc      3600
     cgaatggacg gaatcgctgg tgatccctat cttcaaaaat tgtggtgaaa aagcaaatcc      3660
     tcgtaactat aggccaatct tcttgaacag ttgcctggga aaggtgtttg agcgaatggt      3720
     caacaatcgt ctagttcaca tcatcgagac aagaagatta ctgcatcctc accagtttgc      3780
     cttccggaaa ggaaaaacta ccgttgacca cttggctgag ctcgagaaag tggtacgagc      3840
     agcctggaac aagaaggagt acgttcaggg gatttttctg gatgtgacca aggcgtacga      3900
     taccacctgg agaagactgg tcctgaacca actgcgtgac tggaacatag aaggtctgat      3960
     gttgaaattc ttggaccgaa tgctggaaaa tcgctcattt agagtttttg tgaacggcca      4020
     gctgtcgcaa agcaagatca tggaaacagg cctctgccaa ggatcagtac tgagcgtcac      4080
     cttgttcttg gtggctatca acacattggt agcacggatg ccgcccagca taacaacact      4140
     cttgtacgca gatgatgttg tactgctggc cagtggacga gatgttgaag aagttgagaa      4200
     cgacttgcaa gctgcactga aggcggtgga atgctggcag agctcaacgg gatttaaaat      4260
     ttctgcggag aaaagcgcta ckgtcatctt tagaagctac ggaacgagga aaccaccgag      4320
     cagagctgca ctggagctga atgggaccct gatcccaacc aaaaagcagc accgatgttt      4380
     gggcgttatc ctggatcaac atttaccgtt caagacacac tgcgaggaag tgaaagcggc      4440
     ttgccgacaa cgagtccagc ttatccgttg tgtagcacgt aggtcatggg gtggcgatag      4500
     gaagactcta atcaagctgt acagagccac agtgttggag aaaatcctgt acgcagcacc      4560
     tataacagct gccgtcagcg acaacgtcct gaagatcctc gagccaacac acaacgcagg      4620
     cttgagagct atctgtggtg cgttccgtac cagccctgta gatagtctcc aagctgaaac      4680
     aggaatcccg agcctgagag tgttctttga acagcggaca gcgatctacg ccgccagaaa      4740
     agcagccata tcagcacaga gcagaaccca gccagcagaa gacgactcac aatcagcagg      4800
     aagcagtacc gagagcagct acgatagcaa cagttcagga gaggagtgga attcgactag      4860
     gcatcgaggt ccgctacgtg gagtggaaac tgctgagaca agaggaaagg cgatacttga      4920
     agagctggaa ctaccgttac ccgagctgaa gatattcaca ctaccattgt gtcccccctg      4980
     ggaacgcaga cggatccgga tagacaaaac attactcgaa gctgaacgag ccggagcaac      5040
     ttcaacacaa ctgaaggagc tcttcgtgtc ccgaaggaac acggaatatc gcttgtgtga      5100
     aacaattttc accgatggat caaagaaaga tggcagggtt ggttacgcga tggttagagg      5160
     ggacttggtt gttcgaagaa gaatcagtga tctgagcagt atctttgctg cggagtgtgg      5220
     tgcgatcact gaagcgctca ggtggataat tggtcagaat cgcgtgggga cctacctcgt      5280
     ctgtacagat tccttgagtg ccatcacggc cttgggtaaa cgaaaaacca aatgcagatg      5340
     gaaggatgag atcaacatcc tacacaatca ggcagaatgt aatggcacgg agataatcta      5400
     catgtgggtg aaaagtcatg taggaatagc aggcaacgag aaggcagatg aagaagcgaa      5460
     gcagtcattg aacgacagaa acatctggga cagaagcgta gaattcaagg agttcaggac      5520
     ggtgatcaag aagaggactg tttggcgctg gaatgcggaa tggagcagaa aggtgggcaa      5580
     caaactacga gaggtgaaga actcggtact accttatcga gatgtatttg ttggatcgag      5640
     gaaggaagac gtcattctga caagactcag gataggacac accttgctaa cccatcagta      5700
     tctgctggag aaggacagtg cgccgcgttg cacaaggtgc aatttggcgc tgacggtgaa      5760
     acacatctta gcggaatgcc ctgagtttga agagcagaga cgccgagctg gagtaccatc      5820
     caacgtcagg gaagccttgg ctgatgatcg agatatggcg aaaaatgtgt tgaaattttt      5880
     aaaggctact gacatgtatg gaaaagtgta aagattcata aacaggaccc gaaagactca      5940
     tagttaaaag gtcctaaata aatacaaaaa aaaaaaaaaa a                          5981
//
ID   Nimb-2_LMi  repbase;    DNA;    INV; 5986 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.11, Created)
DT   27-FEB-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5986
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3162-3162 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           722..2134
FT                 /product="Nimb-2_LMi_1p"
FT                 /translation="MGDTSAMTSLSSLLTSTQKRKLDAPQTKKILPNVPKF
FT                 LIVTRTDGHDFSKVNPFIIQKGVDAIAGPLKKCSRQRNGSLLLETDNAFQA
FT                 QKLIRATLLHTFPVKVEAHRTLNSSRGVVYSRSLDGLSDEEIKDYLTDQGV
FT                 IAVHRVMKKADTGLIPTQTVFLTFDKVDLPSKIKAGYEIISVRPYIPNPTR
FT                 CYQCHRYNHTRESCPHAAKCVTCGRDAHEGDCPPPSPRCINCMGDHAASSR
FT                 DCPVYKEERVIQEXRVREKVSTSAARKILAGRKPAELPAGKYSAVLASPRP
FT                 TKEVGTQTCDLTFSDTVVRSASPKIARSTSPLTSSHRKTQSSAAPPKSRAS
FT                 KSDARTSKKEPVREDFLRSEPAQPTSAHTTHRHSSKKAHRKKSSSPSPPRR
FT                 DSTVTPSSSGTTRSSSVSPGRATASRSSGPLLAEEAAPADKSRQAADTPDE
FT                 AMEHDPLPVDSSSSVPSKSDPQWPAR"
FT   CDS           2174..5854
FT                 /product="Nimb-2_LMi_2p"
FT                 /translation="MDLLQWNIRGIRSNREELKLLLRLHRPFVVGLQETKL
FT                 RPRDDIVFSQYTSVRFDLPPVEGIAAHGGVMLLIRDDXYYHPIPLHTQLQA
FT                 VAVRIILPTFSFSLCNIYTPSSSAFTRADVLHLVAQLPSPFLLIGDFNAHH
FT                 PLWGSPASCQRGSLLADILNHLNLVCLNTGAPTFLSDTTHTYSHLDLSICT
FT                 AQLARRFEWYALSDTYSSDHFPCIIHLLHHTLPPGSTSWNISKADWGLFSS
FT                 MAVFHDGNFPTCDSQVEYLTEVILNAAEYSIPRTSSSPRRVPVPWWTAACR
FT                 DAIRARRRALRTFRRHPTLANCINYKRLRAQCRRVIKESKRACWIAFTSSF
FT                 NRLTPSSVVWGGLRRLSGTKVHSPIPGLTVANEVFVDPADISNALGQSFAE
FT                 VSSSAHYHPAFLPRKQTEEARPPSFQSLNRESYNATFTMQELERALSVSRS
FT                 SAPGPDAIHIQMLKNLSLAGKCFLLRTYNRIWIEGQVPTRWREAIVVPIPK
FT                 PGKDKHLPSSYRPISLTSCVCKVMERMVNARLIWLLESRRLLTNVQCGFRR
FT                 HRSAIDHLVTLSTYIMDNFLRKRQTVAVFFDLEKAYDTCWRAGILRTLHTW
FT                 GFRGRLPIFIQAFLLDRRFRVRVGSVLSDTFRQENGVPQGSVLSVALFAIA
FT                 INPIMDCLPADVSGSLFVDDFAIYCSAQRTCLLERCLQRCLDRLYSWSVAN
FT                 GFRFSSEKTVCINFWRYKEFLPPSLHLGPVTLPFVETTKFLGLILDRKLCW
FT                 SPHVSYLAGRCIRSLNVLRVLSGTSWGADRTVLLHLYRSTVRSKLDYGSFV
FT                 YSSARPSILRRLNSIHHRGLRLAIGAFYTSPVDSLYAEAAELPLPYRRDIL
FT                 LCRYACRLLSMPHHPSYPSFFNDSLDSQYGLSAIALLPPGVRFRRLLRQLD
FT                 FTLPSTFQIGESPVPPWLQAQVRVHLELASLPKESTSDAXYCSRFLELRAR
FT                 LENSVFIYTDGSKTNEGVGCAFVVGDDCFQYRLNAHCSNFTAELFALYQAV
FT                 LFIRRHRSPSYVICSDSLSAIQSLSDPFSAHPVVHRINRSLQLLAADGPRV
FT                 HLLWVPGHAGVPGNEAADAAAKAATLLRRTATYCVPSHDIQGALSRRLISS
FT                 WHNVWSSLTNNKLRTIKPLPVAWMTSSRRSRREEIILARLRIGHCRFSHRH
FT                 LLTGDPAPLCSCGHPLSVRHVLLSCSNFTPVRLALHLPDTLEEILADDARA
FT                 VARVLDFINLTNLSKDI"
XX
SQ   Sequence 5986 BP; 1227 A; 1779 C; 1339 G; 1637 T; 4 other;
     tgtcacagcc tgtgcctgag taattaccac aatctgcatt taacctttct gcaatcacca        60
     ttctttgttt aacactgaaa aaagtcttgt tgccccccag ggggcccaca gctcttttgt       120
     gggtacgtgt gtggcgcgca cggggccccg agccgaagta gcctttcttc ctccccaggc       180
     tgcttcacac tcccccccgg ttcgtgcctt tgcccggaga cgggtgtctg agtaaatgta       240
     ggtcatctcc ttttctacgc tttccttttc ctactggtcc ttccctcctt tcactcgctt       300
     ttccgctcgt tcttcttact ctgttgttcc taccttggag ccatccatac catctccgct       360
     tcggcgtttg agattctccc ttttcacttt tctatctccc tctttccatc ctctattctt       420
     cttccttcct ccctgtgcgt gtctgaaggc cgacccacgc atccccgtgc gtagcaggtg       480
     acggggtaac gcgtaattcc ccgccccggg tagacaagta gggcacgtac gtaccccctg       540
     gtagaggcca ggcccaggga ggggcgatta cccgagctgg taccttccga ccgtgccgat       600
     tggtccctcc gtccgtttct cgggaggtgt gacctgaggt gtgaacaatc acctaaggcg       660
     gggtagccct cagtgagggt ccccattagg aaggagcgcg ccatcggaga cgccggtaat       720
     catgggggac acttccgcaa tgacctctct ctcttccctt ttgacttcga cccaaaaacg       780
     aaagttggat gcccctcaaa caaagaaaat actaccaaac gttcctaagt ttctgattgt       840
     tacccgtact gatggtcatg atttctctaa ggtcaatccc ttcataattc agaagggtgt       900
     agatgccatt gcaggtccgt tgaagaaatg ttctcgacaa cgtaatggga gtttgctgtt       960
     agaaacagat aatgcctttc aggctcaaaa actgatccga gccacgcttt tgcacacctt      1020
     cccggtaaaa gtcgaagccc accgtaccct taactcgtca cgtggggtgg tctactctcg      1080
     atccctcgac gggttatcgg acgaagaaat aaaggactac ttgactgatc agggcgtcat      1140
     agctgtccat agggttatga aaaaggctga tacaggtttg ataccaaccc aaaccgtatt      1200
     tttgacattt gacaaggtgg atctcccttc caaaatcaaa gcaggctacg aaatcatatc      1260
     agttcgcccc tatatcccga atcccacacg ttgttaccag tgccacaggt ataatcatac      1320
     ccgtgagtct tgccctcatg cagccaaatg cgtcacctgc ggcagggacg ctcatgaggg      1380
     ggactgtccg cctccatccc ctcgctgcat caactgcatg ggcgaccatg ctgcttcatc      1440
     cagagactgc cctgtttaca aggaggagcg ggtaatccaa gaaatnagag tacgcgaaaa      1500
     agtttcgacc tctgctgcgc ggaagatact agccggtcga aagcccgctg agctcccagc      1560
     gggtaaatac agcgctgtcc ttgcctctcc tcgccctact aaggaggttg gcacacaaac      1620
     gtgtgacctt acttttagcg acacggttgt cagatcggcc agcccaaaga ttgcccgatc      1680
     aacctctcca ctcacttcct ctcaccgaaa aacacagtca tcagcagctc ctcccaaatc      1740
     acgggcgtct aaatcggatg cccggacttc caagaaagag cctgtccgtg aagatttctt      1800
     aagatctgag cctgcacaac ctacgtctgc gcacacaact catcgtcatt cctctaagaa      1860
     ggcacacaga aaaaagagtt cctctccttc cccgccgcgg cgcgactcaa ctgtcacgcc      1920
     atctagcagt ggcaccaccc ggtcttcctc tgtctcgccg gggcgcgcta ctgctagccg      1980
     atcatccggc cctttactgg cggaggaagc tgcccctgcc gataaatcca ggcaggcggc      2040
     ggacactcca gatgaagcga tggaacatga ccctttacct gtagattcca gtagcagcgt      2100
     tccctcgaag tcagaccctc agtggccagc gaggtgatct cctctagctt tttcttctct      2160
     atcttctcac cttatggatc tccttcaatg gaatattcgc ggcattcgtt ccaacagaga      2220
     agaattgaaa ctcctactca gactgcaccg tccattcgtg gtcggacttc aagaaacgaa      2280
     gttacgccca cgcgacgaca tagttttttc acaatatacc tccgtgcgct ttgacctgcc      2340
     ccctgtggag ggtattgcgg cccatggagg ggttatgttg ctcattagag atgacatnta      2400
     ctaccatcct attccactgc acactcaact acaggcagtt gccgtccgca tcattcttcc      2460
     caccttttcc ttctcccttt gtaacatcta taccccatcg tcttctgcct ttactagggc      2520
     agatgtgctg cacctcgttg cccaacttcc ttcccccttt ttgttgatag gcgatttcaa      2580
     cgcccaccac cccctatggg gttctccggc ctcttgccag agaggctccc ttttagcgga      2640
     cattctcaac catcttaatc ttgtctgcct aaacacaggt gcaccaacct ttctttcaga      2700
     cacgacgcat acctactctc acttggacct ctcgatatgt actgctcaac ttgcgcgtcg      2760
     gtttgagtgg tatgctctct ctgatacgta ctcgagcgac catttcccct gcataattca      2820
     tctccttcat cataccctac ctccgggttc cactagttgg aacatctcga aagctgactg      2880
     gggactgttc tcctccatgg cggttttcca tgatgggaac ttccccacct gtgacagtca      2940
     ggtcgaatac ctcacggaag tcattctcaa tgctgccgaa tattccattc cacgtacttc      3000
     gtcttctcca cgtcgagtcc cagtcccctg gtggactgcg gcatgtcgcg atgctattag      3060
     agcccggaga cgtgctctac gcaccttccg ccgccaccca acgttggcga actgtatcaa      3120
     ttacaaacgt ctacgagcgc aatgccgtcg agtcatcaag gaaagcaaac gggcctgctg      3180
     gattgctttt actagttcat ttaacagact tactccttct tctgttgtct gggggggcct      3240
     gcgccggtta tccggcacta aggtccactc cccaattcct ggcttgaccg tcgcaaatga      3300
     agtcttcgtg gacccagccg atatatccaa cgctttaggt caatcttttg cagaggtctc      3360
     gagctccgca cattaccacc ccgcctttct ccctcgaaaa cagacagaag aggcgcggcc      3420
     accttccttc caatctctca atcgggaaag ttacaatgcc accttcacca tgcaggagct      3480
     tgaacgtgct ctctccgtgt cccgatcttc tgctccaggg cctgatgcaa ttcatataca      3540
     gatgctgaag aacctttctc ttgcgggtaa atgttttctc ctccgcactt ataatcgcat      3600
     atggattgaa ggtcaggtcc ccacacgctg gcgtgaagca attgttgttc ccataccaaa      3660
     accagggaag gacaaacatc ttccttcgag ttatcgcccc atttctctca ccagctgcgt      3720
     ttgcaaggtg atggaacgca tggttaatgc tcggctgatt tggctactcg aatctcgccg      3780
     tctccttacc aacgtccaat gcggatttcg taggcatcgt tctgctatcg accacctcgt      3840
     taccttgtcg acctatatta tggataactt tttgcgtaag cgccagacgg tggctgtgtt      3900
     ttttgatttg gagaaggctt atgacacctg ttggagggcg ggtattctcc gcacgctcca      3960
     tacatggggc tttcgcggcc gcctccccat ttttattcaa gcatttttac tagatcgaag      4020
     gttccgggta cgagtgggct ctgttttgtc ggacaccttt cgccaggaga atggggtgcc      4080
     acaaggatct gtgttgagcg tggcactttt cgccatagca atcaacccaa ttatggattg      4140
     tcttccggcc gacgtctctg gctccctttt tgtggacgac tttgcgattt actgcagtgc      4200
     ccagagaacg tgtctcctgg aacgctgtct tcagcgttgt ctcgaccgtc tttactcttg      4260
     gagtgtcgcc aatggcttcc ggttctccag tgagaagaca gtctgtataa atttctggag      4320
     atacaaagag ttccttccac cgtctctcca tcttggcccc gttactctgc ctttcgtgga      4380
     gacgacgaaa tttttagggc tnatattgga caggaaactc tgctggtccc cgcatgtgtc      4440
     ctatctggct ggccggtgta ttcgttccct taacgtcctc cgtgttctta gcggcacgtc      4500
     atggggagcg gatcgaaccg tcctacttca cctctaccgg tccactgtcc gctcaaaatt      4560
     ggattacgga agcttcgttt actcttccgc acggccgtcc attttacgcc gcctaaactc      4620
     gattcaccat cgggggttac gcctggcgat aggagctttt tacacaagcc ctgttgacag      4680
     cctctatgcc gaagctgccg aattaccttt accctatcga cgcgacatat tactgtgtcg      4740
     gtatgcatgc cgtttgcttt cgatgcccca ccatccttcc tatccatcgt tctttaacga      4800
     ctccctcgat agccaatacg ggctgtctgc gattgccctg ctccctcctg gagtccgttt      4860
     tcgtcgcttg cttcggcagc tcgattttac tctcccttcc acatttcaaa taggtgagag      4920
     cccagtgcca ccttggcttc aggctcaagt tcgcgttcac ctcgaactcg cctcactccc      4980
     gaaggagagt acttcggatg ctttntactg ctcgcggttt cttgaacttc gtgcacggct      5040
     cgaaaattcc gttttcatat atacggatgg ctcaaagacc aatgaaggtg tcggatgtgc      5100
     gtttgtcgtc ggggatgact gttttcagta caggcttaat gcccactgct cgaatttcac      5160
     agctgagctt tttgccctct atcaggctgt actatttatc cgccgacacc gttctccttc      5220
     ctatgtcatc tgctctgact ccctcagcgc catccagagt ctgagcgacc ccttttcggc      5280
     ccatcctgtt gtgcaccgaa tcaaccgctc ccttcagtta ttagctgccg acggccctcg      5340
     cgttcacctc ctgtgggtac ctggccacgc aggcgtgcct ggtaacgagg ctgctgatgc      5400
     cgctgccaag gctgcaactc tcttacgtcg gacagctacg tactgtgtcc catcgcatga      5460
     tattcaaggg gctctttcgc ggcgccttat atcgtcgtgg cataatgtgt ggtcttcgct      5520
     tacaaataat aagcttcgga ccattaaacc gctcccggtg gcttggatga cctcgtcacg      5580
     ccgctcgcga cgagaagaga tcatcttggc ccggttgcgg atcggacatt gccggttcag      5640
     ccaccgccac ttgctcactg gtgaccccgc accgttatgt tcctgtggcc acccgctgtc      5700
     ggtgcgccat gttttattgt cgtgttccaa ttttactcct gttcggcttg cactacatct      5760
     gccggacaca ctggaagaaa ttttagctga tgacgcgcgg gctgttgctc gagtattgga      5820
     ttttatcaac ttgaccaatt tgtcaaagga catttagctc ttccctttgt tgttttttat      5880
     tctatgtttt tagctgtttt tatatagtct tattatcctt gggtatatcc cagttttgat      5940
     tcgggcgcta atgacctcag cagttgtgcg ccctaaaacc acaaaa                     5986
//
ID   Nimb-2_RPr  repbase;    DNA;    INV; 5804 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Nimbus-type non-LTR retrotransposon: consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5804
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3479-3479 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           433..1797
FT                 /product="Nimb-2_RPr_1p"
FT                 /translation="MLPTTNTQISSGSAKNGESPLVKYKKNNAVDPKILFS
FT                 ETGLGRQFFVMSCVDEGKNFEPFWPYKVFTFLKNVCPGTKTKKLRNGSLLI
FT                 ETSAANERAKSLLTLDKYEGLNVKVELHRSLNYSKGVISSYDLLNCTEEEI
FT                 LNESRSQGVVEVKRLYKQQFNERKPTPALILTFVGSQPPEKITAGFLSLPV
FT                 RHYIPNPLRCFKCWKLGHIANNCSVGDRCKLCSGPIHQNECPTPPICINCK
FT                 GPHSPLSAECEIFKKEKRIQELKVKECISYNEALKRVKAETARPISYAECV
FT                 SQAPSLETKKFEDVITRLTAVVEVLAKSVERLENKYEKVIKKLENQEDLAE
FT                 QAQCEMEVVTSDPVKVTKEVVTREPVKEIKKRPKTPSSPTTKMNSISSPPR
FT                 KIGGSGYKKVEQKMETRRELRSNASSNSSLTSVENKELENLELEELKKIVF
FT                 DLRKKGKGKK"
FT   CDS           1831..5514
FT                 /product="Nimb-2_RPr_2p"
FT                 /translation="MILQWNCRGFYRNLEELKLLVNRYNPKIVCLQETNFR
FT                 EKDIPKLKGFRAYRRDFLLGNRACGGVVIFVRNDIYCENDVSILSDIQMIH
FT                 LTVYIPTKITVCNIYLPPAIPVTKGELTRHIRALPAPYVIVGDFNAHHTMW
FT                 GSTHVSPRGRMLEDILVKENIALINKQEFTHFNSSNGSLSAIDLAFSSPSL
FT                 LPLLDWTVHRDLCGSDHFPIMISCANQDANLSVVPRWSLKRAQWEKFASMA
FT                 NFRDQEFNNIDEEAEYITKVLVDAAETSIPKTSVTLKKTPAPWWNGECKNA
FT                 IKNRKKALRQFYNQASEENLAKYKILRSKARRIIKESRKESWRQFVSTISQ
FT                 STPSSEIWKKIKAIIGVRSTTQIPGLNINGSVKTEDLDKAELFAEAFAKVS
FT                 GSDKYPKDFLSIKLEEENQAIDFSEEGCNQNYNIPFKMWELERSLSKSKNT
FT                 SPGPDNVHYKFLQNLTQQNKIYLLRFYNRIWSGRQFPKAWSVAITIPIAKE
FT                 GKDKSMPESYRPITLSSCLCKTLERMISKRLTWYLETNRLLDKHQTGFRRF
FT                 HSTIDPLLELESAIQNAFLKKYHLIAVFFDIEKAFDMVWRYGLLKQMHRWN
FT                 LRGNLPIFIQNFLKLRIFRVRLGRALSSPFIQENGVPQGSILSPILFLIAI
FT                 NSVLTSLEQSVHGLLYADDLVIFRSSPSFIVAEDGLQMAIDELEQWSKKNG
FT                 LRFSPSKSNCVHFHRLRKTQPTVELKLEGRIIPCKSKVRYLGLTLDAKLSW
FT                 RAHLEDLKQRCIRKLNAIKVLKGTKWGADRHSMMNFYKAYVRSKIDYGSII
FT                 YGSARNSLLRIINPIHNEGIRMALGALRTSPVNSLYAESGEPPLXTRRNVL
FT                 MCNYVAKLLPLENHLCYKTVFTPELLDKYRTYTNSKPLGIRFANLCTENNI
FT                 EIPITVNSEACQIEPWVLNRPLTDYTLSKYIKSNTPPYVYRNKFLERTRNK
FT                 YVNYKQIFTDGSKTATGVGSAWVIDGRSYSWSLNNISSIFTAELFAIFKAL
FT                 EHIIDSAERKFLICSDSRNSLDAICKLDTDNLLIQTVHKRLHLCAEIGKTV
FT                 VFLWTPGHSGIKFNEIADKAARNAALISNPKENVLPLDWRAYLRTQALLLW
FT                 KREWETLPLMNKLRNIKSTPLKWMTSSRQSRHEEVILARLRIGHTMLTHGY
FT                 IFRGEQQPICGTCNVILSVHHIFVECTRYTWARRKLNMGNSMKEILDDNED
FT                 NARKALQYLKDIDLYSLI"
XX
SQ   Sequence 5804 BP; 1969 A; 1118 C; 1221 G; 1495 T; 1 other;
     tgtgtaataa taatcaagac gcccctgcag gaccggggat tagaataggc ctgctcccgt        60
     ccaggatgtc gtaaaaggcg actaaaggac tacgcagggg cggctggata acagtcgtat       120
     gggtgtagcg cacccacgga acccgagctc aataccacac atatatacac atgcacacat       180
     ttgaaactca ctcattcaca cgtacacaca cacaaacaca tgtacacaca tacacaccac       240
     ctaattttac acttacagac gcccctaaat tccggtgtga gtaccgagcc gggaggtttg       300
     tgggcggggg tatcggccca cttatcggcc ccactgagca ccaggccgaa ctcagtgagt       360
     aagtaggccc cctgacggta agggcgctct gccgaagggg tagtatagat cgtccccact       420
     cgtgggaact ttatgttgcc aaccactaac actcaaattt catcaggatc agcaaagaat       480
     ggagaatctc cattagtaaa atataaaaaa aataatgctg ttgatccgaa aattctattt       540
     tcggaaacag gattgggaag acaatttttc gtaatgtctt gtgtagacga aggaaaaaac       600
     ttcgagccct tctggccgta caaagtattc actttcctaa aaaatgtttg cccggggacc       660
     aaaaccaaaa aactacgtaa cggttccctg cttatagaaa ccagtgctgc aaatgaacgt       720
     gcaaaatcat tgttaacctt ggataagtat gaaggattaa acgttaaagt tgaattacac       780
     agaagtttaa actattctaa gggtgtgatt tcgagctatg atttgctgaa ctgtacagag       840
     gaagagatac tgaatgaatc cagatcgcag ggtgtagttg aagtaaagag attgtataag       900
     caacaattca atgaaaggaa accaacccct gcacttattc ttacattcgt gggatctcaa       960
     ccaccagaaa aaattacggc cgggttcttg tcattgccag taaggcatta tattccgaac      1020
     cctctacgat gcttcaaatg ttggaagtta ggacatattg caaataattg ctctgttggg      1080
     gaccgctgca agctctgctc gggtcctatc caccagaatg agtgtccaac tccgccaata      1140
     tgtataaact gcaaaggccc tcattccccg ctatctgcag aatgcgaaat ctttaaaaag      1200
     gaaaaaagaa tacaggaact aaaggtaaaa gaatgtatca gttacaacga agcattaaag      1260
     agggtgaaag ctgaaacagc tagaccaatc agctatgcag agtgtgtttc ccaagcacct      1320
     agcttggaaa ccaagaaatt tgaagacgtg ataacgcggc ttacagcagt agtagaagtc      1380
     ctagcaaaaa gtgtagaaag gttagaaaat aagtatgaga aggttattaa aaaactggaa      1440
     aaccaggaag acctagctga gcaagctcaa tgtgagatgg aggttgtcac gagcgatccc      1500
     gtgaaagtaa ccaaggaggt tgtcacgagg gaacccgtga aagaaatcaa aaagcggccc      1560
     aaaaccccaa gctctcctac tacaaagatg aattctattt cttcaccccc taggaaaata      1620
     ggagggagtg ggtacaagaa agtagaacaa aaaatggaaa ccaggaggga attgagaagc      1680
     aacgcttcct caaactcttc tttaacaagc gttgaaaata aagagttgga aaatttagag      1740
     ctcgaggaat tgaaaaaaat tgtattcgac cttcgaaaga aagggaaagg gaaaaaatga      1800
     aaagaattta atttaatttt aacattttaa atgatcctgc aatggaactg tcgcggtttt      1860
     tatagaaact tagaagaact gaaactgttg gtaaatagat ataaccctaa aattgtttgt      1920
     ctgcaagaga ctaattttag agaaaaggat atcccaaaat tgaagggttt tcgagcttac      1980
     cgaagagact ttcttctagg caaccgagcc tgtggaggcg ttgtcatctt cgtgagaaac      2040
     gacatctact gcgaaaacga tgttagcata cttagtgata tccaaatgat acacctgaca      2100
     gtgtacatcc caacaaagat tactgtctgt aacatctact taccacccgc tattcctgtc      2160
     actaaaggag aattaactag gcacatccgt gcgctgccag cgccctatgt aatagtaggt      2220
     gactttaacg ctcatcatac catgtgggga tctacccacg tgagtccgcg tggcagaatg      2280
     ctggaagata tattagttaa agaaaacatt gccttaatta ataagcagga atttacacat      2340
     ttcaatagca gtaatggatc actctccgcc atagatctag cgttctcttc tccatcgcta      2400
     ttaccacttc tcgattggac tgttcacagg gatctatgcg gaagtgatca ctttccaatt      2460
     atgatctcct gtgcaaatca agatgcgaat ctatctgtag tccccagatg gtcactaaaa      2520
     cgtgcccaat gggagaaatt tgcttccatg gctaatttta gagaccaaga atttaacaat      2580
     atcgatgaag aggctgagta tatcactaaa gtattagtcg acgcagcaga aacctcaatt      2640
     cctaaaacga gtgtaacttt aaagaaaact cccgcaccat ggtggaatgg ggaatgtaaa      2700
     aatgcaatta agaatagaaa aaaagctctg agacaatttt acaaccaagc ttccgaagag      2760
     aatcttgcca aatataaaat attaagatct aaggcaagaa ggataataaa ggaaagtagg      2820
     aaagaatcct ggaggcaatt tgtgtcaact atttcgcagt caacaccttc ttcagagatt      2880
     tggaaaaaaa ttaaggcaat tattggcgtt aggtctacta cccagatccc tggattaaac      2940
     ataaatggta gtgtcaaaac tgaagacttg gacaaagcag aactgtttgc agaagcattc      3000
     gcaaaggtat ctggatcaga caaatatcct aaggactttc tctccataaa actagaggag      3060
     gaaaaccagg ccattgattt ttctgaagag ggatgtaacc aaaattataa tattcccttt      3120
     aaaatgtggg agttagagag atccttatct aaatccaaaa atacttcccc agggcctgat      3180
     aatgttcatt acaaatttct acagaaccta actcaacaaa acaaaatata tctacttagg      3240
     ttttataaca gaatatggag tggtagacaa ttcccgaaag catggagcgt agccattacg      3300
     atacctatcg caaaagaagg aaaggataaa tcaatgcccg aatcttatcg tccaattact      3360
     ctcagcagtt gcttatgtaa gacattagaa agaatgataa gtaagcgctt gacgtggtac      3420
     ctagagacaa accgacttct agataaacat cagactgggt tcagacgctt ccatagcaca      3480
     attgatcctc ttttagaact cgaaagtgct atccagaatg cttttttgaa aaaataccat      3540
     ctcatagcag ttttctttga catagaaaag gcatttgaca tggtctggag gtatggcctt      3600
     cttaagcaga tgcatcgatg gaacctaagg gggaacctac caatatttat ccagaatttc      3660
     ttaaaactga gaatattcag agtccgcctt gggagagccc tgtcgtctcc tttcatccaa      3720
     gagaatggag tccctcaggg gagtatttta agccctattc tattcctcat agcaataaat      3780
     agcgttctaa cttcgctgga acaatcggta cacggactgc tttacgcaga tgatttagta      3840
     atatttagaa gctcgcctag cttcattgta gcggaggatg gtctccagat ggctatagac      3900
     gaacttgaac aatggtcgaa aaagaatggt ctccgcttct cgccaagtaa aagtaattgc      3960
     gttcatttcc accgacttcg caaaactcag ccaaccgtag agttgaagtt ggaaggtaga      4020
     ataattccct gcaaaagtaa agtcaggtat ttaggactaa ctctagacgc aaaattaagt      4080
     tggcgtgcac atcttgagga tttaaagcaa agatgtataa ggaaattgaa tgcaatcaaa      4140
     gtcttaaaag ggacaaaatg gggagcggac cgacatagta tgatgaattt ctacaaagca      4200
     tacgtccgtt cgaagataga ctatggcagt ataatatatg gttcggcaag aaattcttta      4260
     ctgcgaataa taaatccaat acataacgaa ggaatccgaa tggcgcttgg agcgttgaga      4320
     actagtccag tgaacagttt atacgcggaa agcggagaac ctccgttagm aactagaaga      4380
     aatgttttaa tgtgtaacta tgtagcgaag ttattaccac tggaaaacca tttgtgctac      4440
     aaaaccgttt ttacgccgga gctattggat aagtacagaa catataccaa cagcaaacct      4500
     ctaggtatac gttttgctaa tctctgtacc gaaaataata tcgagattcc tataacagta      4560
     aactcggagg cttgccagat cgaaccttgg gtactcaata ggcctctaac agattatact      4620
     cttagtaagt atataaagag taatacgcct ccttacgttt atagaaataa gttcctagaa      4680
     aggacgagaa ataagtatgt gaattataag caaattttca ctgacggctc taaaacggct      4740
     actggagtgg gatcggcctg ggtgatagat ggaaggagtt acagctggtc actgaacaat      4800
     atttctagta tcttcacagc ggaacttttt gcgattttca aagctttaga acacataata      4860
     gattccgctg agagaaaatt tctaatttgt tcagattctc gaaactctct ggatgcgata      4920
     tgtaagttgg atacagacaa cctactcatc cagaccgtgc ataaacgtct gcatctttgt      4980
     gctgaaattg gaaaaacagt cgttttccta tggactcccg gacattcagg gattaaattc      5040
     aatgaaatcg ccgacaaggc cgctaggaat gcagccttaa taagtaaccc aaaggaaaat      5100
     gttctgccgt tggattggag ggcttatctg cgcacccaag ccttattgct atggaaacgg      5160
     gaatgggaaa cacttccatt aatgaataag ctgagaaata ttaaatccac accattgaaa      5220
     tggatgactt caagtagaca gtcccgccac gaagaagtca tacttgcaag actaagaata      5280
     ggccatacga tgctaaccca tggctatatc tttagaggtg agcagcaacc catatgtgga      5340
     acctgcaatg taatactatc cgtccatcat attttcgtag aatgtaccag atatacatgg      5400
     gctaggcgga agttaaacat gggtaatagc atgaaagaga tcctggacga taatgaagac      5460
     aatgcaagga aagccttgca ataccttaaa gatatagatt tatatagtct catatgacac      5520
     tatgctagtc tctaattatg aaagtatgta aatatgtttt tatcttagat taggttatta      5580
     atgtgatgcg aggaatatca agtactccat cacaaatcgc gattagattt aatgtgtgtg      5640
     attgtattta tttggatgaa tgtatttata tgcatgagtg ttttttttgt tagaatgata      5700
     gttttagttt agaatgagct agtgtagtgt cattcagcaa cattgtcagg tgcgaaggac      5760
     cttagatgtt gagcaccttt aaaaagaaca caataataat aata                       5804
//
ID   Nimb-30_LMi repbase;    DNA;    INV; 5792 BP.
XX
AC   .
XX
DT   02-APR-2014 (Rel. 20.01, Created)
DT   02-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5792
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 208-208 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           574..1947
FT                 /product="Nimb-30_LMi_1p"
FT                 /translation="MGDFFAMGSQKRKYKDMKESQDSQNSTTLPAAPRYLV
FT                 VTRTEDGQSFSTVNPFVIQKGVDAIAGPVKSCKRLHNGTLLIETDSAFQAQ
FT                 RLLKATLLQGYPVQVEAHRTLNYSRGVVYSNLLDGLTEEEIKDYLSDQGVT
FT                 AVHRVMNRVNNELVPTRTVFLTFDRVTLPPKIKAGYEVLNVRPYIPNPTRC
FT                 YQCQRYNHTRQSCKNPAKCVTCGRDAHEGDCPPPSPRCLNCMGNHAASSRD
FT                 CPIYRDERAIQEIRVKEKVPTQVARKMYASRKQSTLASGTFSSVVATPRQL
FT                 RDMSTQTCDLQFSAAVVTTPSHMMASSSPAKSTHRPTKPPLAPVKSLASQT
FT                 ETRKSKKDYTREDFLHPSSSQPSGSSTDTRHGSKKSGRGKKSSPSPSRHSS
FT                 STTSSSDALPRTASVSPGRTASGRSGGRPQAGSEATVELMDQDPPLLDPTN
FT                 CEHSHCGPPQSQG"
FT   CDS           join(1951..3108,3050..3370,3285..4598,4456..5646)
FT                 /product="Nimb-30_LMi_2p"
FT                 /translation="LFIPPLSSSHLTMVILQWNIRGIRSNRTELQLLLQTY
FT                 SPLIVCLQETKLHPHTRFNVPHFSSVRFDLPPVAGVPAHGGVMLLLRDDIH
FT                 FQIIPLQTQLQAVAVRLSFPGFSFSLCNVYTPSSSAVTRSDLLHLIDQLSP
FT                 PFLLVGDFNAHHPLWGSPRPCQRGSLLADLLNHLNLICLNTGEPTYLSDST
FT                 HTFSHLDLSICTVQLARRLEWSVLSDTHSSDHFPCVIRLLTPFIPAHPSNW
FT                 QLSKADWQLYSSLATFHERLFPSIDHRVDYLTTVILTAAERSIPRTSSLPR
FT                 RPPVPWWTEECREALRARRRALESLNAIPHRKTVFTTNGCVHNAAAFFGKA
FT                 NELVGFPSLVRLTVLPPPLLFGVNFADFRDLVSFPDPGFNHSETSQTFGTL
FT                 SHSPIPGLTIANDTIVDPTDISNTLGQFFAEISSSSHYHPSFLPQKQAAEA
FT                 RLLSFSSQNWECYNTNFTMSELQHALSSSRSSAPGPTRSCTDVKTPFFASF
FT                 NMHSPHHGPPLQDPRVHVQMLKHLSSEGLQFLLRTYNRIWTEGTFPRCWRE
FT                 AIVIPLPKPGKDKHLPCSYRPISLTSSVCKVMERMINGRLVWWLESRNLLT
FT                 NAQCGFRKHRSAVDHLVTLSTHIMNNFLQKRQTVAVFFDLEKAYDTCWRMG
FT                 ILCTLHTWGLRGRLPTFIQEFLKDRVFWVRVGSALSNTFLQENGVPQGSVL
FT                 SVILFAIAINPIMDCLTLGVSASLFVDDFAIYCSSQRTCLLERRLQQCLDR
FT                 LYXWSINNGFRFSTDKTVCMNFWRRTEFLPPSLHLGPAVLPFVDTTKFLGL
FT                 TFDRKLCWSSHVSHLAARCXRSLNVLRVLCGTSWGADRTTLLRLYRSLVRS
FT                 KLDYGCIVYSSARPSILRRLNTIHNQGIRLATGAFYTSPVESLYAELPLSY
FT                 RREVLLSRYASRLSSMRGHPSYEAFYLRQGLSTQALSRVSMLNCRCPTGGR
FT                 SSSVVMRVGCHPCVATHPMKLFIYDSLDRXYAASPSLIPPGVRFRKLLWQL
FT                 DFTLPATLPTGASSSPPWLCPEVLVNLDLHSLPKDSTADLVYRSMFVALRS
FT                 QLADSIFIYTDGSKTDHGVGCAFVLGDFSFQYRLPDYCSIFTAELFAIYQA
FT                 TQYIRRHQHSKCVICSDSLSALQSLCVLYSVHPIVQRIQQCLHSLTANGAT
FT                 VLFLWVPGHVGVSGNEAADAAAKGAALLPRPATYSVPSADLRAILSGRVVS
FT                 LWHAHWSSLQGNKLREVKPLPIAWSTSSRREEVILTRLRIGHCRFSHRHLL
FT                 SGDPAPLCGYCSEPLTVRHLLVQCPFFNRVRQSLCLSSELSDVLADDTRSV
FT                 DRVLLFIHRTNMAKEV"
XX
SQ   Sequence 5792 BP; 1205 A; 1706 C; 1255 G; 1622 T; 4 other;
     ccccaggggg ctcaccattc tttggtgagt acgtgcttgg ctaccacggg gccccagcct        60
     ttgcagcact ccttcctttc cgtgctgcat gactactctc ccactatcct tttcccctct       120
     cttggggacg gagtcttgcg cctcctccgg gaaactggag atatgtagta ttgttgaatt       180
     tacctggatt tttctttcac tttctctttc ctctcttctt ccttatcttg cctatttttt       240
     cctccgcttc ggcatttgag gttcctcttc tcttcttctt tcttcctccc tgtgcgttcc       300
     tgaaggccgc ccacacgttt gacgtgtaaa aggtgactgt ggttaacgca gccccgggtt       360
     ggcatgtagg gttcgtgcgt accccctggt gaaggccagg cccagggagg ggtgattgcc       420
     tgagctgtaa ccttcccgat gtgccgattg gtccctccgt ccggagttcg ggaggtgtga       480
     cctgaggtgt ggacaatcac ctaaggcggg tgtgctccct ttgaaggggg gcccccagta       540
     ggaaggagcg cgccatcgga gacgctggca atcatggggg atttcttcgc aatgggatcc       600
     caaaaaagaa agtataagga tatgaaagag tctcaggatt cccaaaattc gactactctc       660
     ccggctgcac ctcgatacct cgtggtaaca cgtaccgaag acggtcaaag tttttctaca       720
     gttaatccat tcgtcatcca aaaaggcgtt gatgcgatcg caggcccagt gaagtcctgc       780
     aaacgtctgc acaatggtac cttattgatt gaaacagaca gtgcctttca ggctcagagg       840
     ttactaaagg ccacccttct ccagggttac ccggtgcaag tggaggccca ccgtactctg       900
     aactactctc gtggggttgt atacagtaat ctgcttgatg gtttgaccga ggaggaaatc       960
     aaggattacc tctccgatca gggcgtcaca gcggtgcata gggtcatgaa tagggtcaac      1020
     aatgaattgg tcccaacccg cactgttttc ttgacatttg atcgagtgac tctgcctccc      1080
     aagatcaaag cwggttatga ggtcctcaac gtccgacctt atatccccaa tcccacccgc      1140
     tgctaccagt gtcagcgtta caaccatacc aggcagtcat gtaaaaatcc agctaaatgc      1200
     gtcacatgcg gcagggatgc ccatgagggt gattgtccac ctccttcccc tcgctgccta      1260
     aactgcatgg gtaaccacgc cgcctcctcc cgtgactgtc ccatctatcg tgacgagcga      1320
     gcgattcagg aaatacgggt gaaagaaaag gtaccgacac aggtcgcaag gaaaatgtat      1380
     gccagtcgta aacagagtac gttagcatct gggactttca gctcagttgt tgctactcca      1440
     cgacaactgc gagacatgtc tacacagaca tgcgacctac agttcagtgc tgctgtggta      1500
     acaacaccca gtcacatgat ggcatcgtca tctcctgcca agagcacaca ccgtcctacc      1560
     aaacctccgc ttgcacctgt gaaatctctt gcctcacaga cagagacacg gaaatccaag      1620
     aaggattata cccgtgaaga cttcctgcac ccatctagct cacaaccatc cgggtcttca      1680
     actgataccc gccacggttc aaagaagtcg ggcaggggga agaaatcttc cccttctccc      1740
     tcccggcatt cctcttccac aacgtcatct agtgatgccc tcccccggac ggcctctgtg      1800
     tcaccggggc gcactgccag tggtcgatca ggtggccgac ctcaggctgg ctctgaagcc      1860
     actgtcgaat taatggacca agatcctcca ctcttagatc caactaattg tgagcattca      1920
     cattgtggtc ctccgcagtc acaggggtga ctgttcattc cacctctttc cagttctcat      1980
     ctcactatgg ttatccttca atggaacatt cgcggcatcc ggtccaatag aacggaacta      2040
     cagcttctct tgcaaaccta ctccccacta attgtctgcc ttcaggaaac aaaactacat      2100
     cctcacactc gctttaacgt gccacacttc tcctcagttc gcttcgacct tccccccgtg      2160
     gcaggggttc cagctcatgg gggcgtcatg ctgcttttaa gagacgatat ccatttccaa      2220
     atcatccctt tgcaaaccca gcttcaagca gtagcagtta gactgtcctt tcctggtttc      2280
     agcttctccc tgtgtaatgt ctacacaccg tcatcctctg ctgtcaccag gtctgacctt      2340
     ctacacctta ttgaccagct ttctcctcct ttcttgttgg tcggcgattt caatgcccac      2400
     catcctcttt ggggctctcc acgcccttgt cagaggggct ctctcctggc ggatctcctc      2460
     aaccacctta acctcatctg tctcaacact ggcgaaccca cttatctttc ggactccaca      2520
     cacacctttt cccacttgga cctttccatc tgcactgttc aactggcccg tcgcctcgag      2580
     tggtctgttc tttcagacac acactcgagt gaccattttc catgtgtcat tcgtctactg      2640
     acgcccttca ttccagctca tccatccaac tggcagcttt ccaaagctga ttggcagctt      2700
     tattcttcat tagctacttt ccatgaacgt ctttttccca gtattgatca ccgggtcgac      2760
     tatcttacta ctgtaatcct cactgccgca gaacgttcta ttcctcgcac ctcttccttg      2820
     ccgcgacgtc ccccagttcc ctggtggact gaggaatgtc gcgaagcact cagagctcgg      2880
     agacgtgctc tcgagtcttt aaacgctatc ccacacagga aaactgtgtt cactacaaac      2940
     ggttgcgtgc acaatgccgc tgcctttttc gggaaagcaa acgagctagt tggctttcct      3000
     tcactagttc gtttaacagt tttaccccct cctctgttgt ttggggtaaa cttcgcagac      3060
     tttcgggacc ttgtctcatt ccccgatccc gggtttaacc atagcgaatg atactatagt      3120
     ggatcccact gacatctcca acactctggg ccagtttttt gccgagattt cgagctcctc      3180
     acactaccat ccctctttcc tccctcagaa acaggcagcg gaagcgaggt tgctctcttt      3240
     ctcgtctcag aattgggaat gttataacac caatttcact atgagcgagc ttcaacatgc      3300
     actctcctca tcacggtcct ccgctccagg acccacgcgt tcatgtacag atgttaaaac      3360
     acctttcttc tgaaggcctg caatttcttc ttcgaacgta caaccgcatt tggacggaag      3420
     gcacgtttcc tcggtgctgg cgtgaagcca tcgtgattcc tctacctaaa cctggaaagg      3480
     acaaacatct accttgcagc taccgtccga tctccctcac cagcagcgtt tgcaaggtga      3540
     tggagcgtat gattaatggt cgattggtat ggtggctcga atctcgtaat ctcctcacca      3600
     atgcacaatg tggttttcgt aagcaccgtt cagcagtcga tcatctagtc accctatcaa      3660
     ctcatattat gaataatttt ctgcagaagc gccaaacagt ggccgtattt ttcgatttgg      3720
     aaaaggcata tgacacctgc tggaggatgg gtatcctttg cactctgcac acatggggtc      3780
     tccggggtcg cctgccaacc tttattcagg aattcttaaa agaccgtgtt ttttgggtgc      3840
     gtgtgggttc agccctttcg aacactttcc tgcaggagaa cggtgtacct caaggctcag      3900
     tgttgagcgt cattctattt gctatagcaa ttaatcctat tatggactgt ctcacactgg      3960
     gcgtctcagc ttctctcttc gttgatgact ttgcaattta ttgcagctct caacggacct      4020
     gtcttcttga acggcgtctt cagcagtgtc tcgaccgtct ttacwtctgg agcatcaaca      4080
     acggctttcg cttctccaca gacaagacag tctgtatgaa cttctggcgg cgtacagaat      4140
     ttctccctcc ttccctccat ctcggaccag ctgttcttcc gttcgtagac actacaaaat      4200
     tcttgggact aacattcgac aggaaacttt gttggtcctc ccatgtctct cacttggcag      4260
     ctcgctgtaw ccgttcactt aatgttctca gagtgttgtg cggtacctca tggggagcgg      4320
     atcggaccac cctcctccgc ttgtaccgat cccttgtccg ctcgaaacta gattacggat      4380
     gcattgtcta ttcatcagcc cgaccatcta tcttacgccg ccttaacacg atccacaacc      4440
     aagggatccg tttagcgaca ggggctttct acacaagccc tgtcgagagt ctctatgctg      4500
     aattgccgct gtcctaccgg agggaggtcc tcctcagtcg ttatgcgagt cggttgtcat      4560
     ccatgcgtgg ccacccatcc tatgaagctt tttatttatg attcacttga tcgtcamtat      4620
     gcagcgagtc cttctctaat acctcccgga gtccgttttc gcaaacttct ttggcaactt      4680
     gactttacgc tccctgccac gctcccgacg ggagcgagct cttccccgcc ctggctctgt      4740
     cccgaggtcc ttgtcaacct tgacctccat tcgcttccca aagactctac cgctgacctc      4800
     gtctatcgca gcatgtttgt agctcttcgc tcacagcttg cagacagtat cttcatctat      4860
     actgatggtt ccaagactga ccatggtgtc gggtgtgcct ttgtgcttgg tgacttttct      4920
     ttccagtatc gtctcccaga ctactgctcg atctttacgg cggagctctt cgccatttat      4980
     caggccacgc agtacatcag gcgacaccag cattctaaat gtgtcatatg ctcagactcc      5040
     ctgagtgcac tccagagcct atgcgtgcta tattccgtcc accccatagt gcaacgaatc      5100
     caacagtgcc ttcactcact tactgccaat ggcgccactg tactgttcct ttgggtcccg      5160
     ggtcatgttg gtgtgtcagg gaatgaggct gccgatgctg ccgcaaaggg tgcagccctc      5220
     ctccctcgtc ctgctacgta ttctgtccct tcagctgacc ttcgtgccat cctttctgga      5280
     cgtgtggtct cactctggca tgcacattgg tcttcccttc aaggaaataa acttagggag      5340
     gttaagcctc tccctattgc ctggtcgacc tcctctcgcc gtgaggaggt cattctcacc      5400
     cggctgcgca taggccactg tcggttcagc caccgccact tactaagtgg cgaccctgct      5460
     ccactgtgtg gttactgttc cgaaccgttg actgtacgcc accttctggt ccagtgccca      5520
     ttttttaatc gagtacgaca gagtctgtgt ttatcgtcag aactgtctga tgttttagcg      5580
     gatgacacgc gttctgttga tcgcgtttta ctttttatac atcgtaccaa tatggcgaaa      5640
     gaagtttaaa atccttcact tgaggaattc tgtcgtgtcc ttgtttcttt accttttctt      5700
     gtatcgcctt tttatctctg cctcctttta gttcttgttc ttaataagca cggacatggg      5760
     cgcttatgac ctctgtagtt ttgcgcccta aa                                    5792
//
ID   Nimb-31_LMi repbase;    DNA;    INV; 5941 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 20.01, Created)
DT   03-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5941
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 209-209 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..1985
FT                 /product="Nimb-31_LMi_1p"
FT                 /translation="MKRSRNVAGRITGISKRGRGEYNAAECDPQTFPSLAT
FT                 PWEERRARHQGEAYAPKYLVCXRNDGESFKTTKPLFFVENLEDKFGEVEGM
FT                 SKMRSGSVLITTSSPAQSRALLACDKLGDVSVTITPHKTLNMVQGIIFHKD
FT                 LLLQSDEELRANLERRGVHFIRRVHRGPKDNRVATGAFILAFEGDSLPEKV
FT                 KVMIYRCDVKPYVPPPMRCFKCWRFGHMSSRCDANPTCRECGRAVHPNVPC
FT                 TPPPVCVNCGQNHSPCSPTCSVLQQERKIMEYKTRDRLTYSEAKRKYQKLH
FT                 PVHLTNSYATAASSSSTVPRLPCTQPLPVGSHAQSTTPAPLTAGGTSSSVA
FT                 PTLFTVGATTAQTSGTPVPTSKPEKEKPSPAPLARKGSLGTLPSEASPHGK
FT                 EDPSKLLXDPLAADRRASCSSSAPEAVSEKPSRPLKPKGQREAKKQTTKKK
FT                 ETLVAPKPQIPTSSGSEDEVKILASPEDLAXTDPLDPMDHDLXILSTRQTT
FT                 MQWNNLLLSYYYGFSARRQSYSTMELRRFLQPHS"
FT   CDS           join(1918..3930,4086..5612)
FT                 /product="Nimb-31_LMi_2p"
FT                 /translation="MDSQLGDKVILQWNCGGFFNRIAELQQLLCRIPVFCL
FT                 ALQETWFPVQRTPALRGYRGYYRNRATCDRASGGVAVYILATVPSAAVPLQ
FT                 TTLEAVAVRIRAGQEFTVCSIYLPPDAAVSITDVAAVIAQLPPPFLLLGDF
FT                 NAHHPLWGGTQTTVRGRDVETLLSQQDICLLNTGAPTHFCVARGTYSAIDL
FT                 SLCSPSLLPHFRWRTHDDLCGSDHFPILVSHLHFQPAGSPPRWSLRRANWQ
FT                 DYTSTATFPVPVPANVDTAVCQVTAAIVSAAEATVPTTSGTPRRKSVPWWT
FT                 PEIAAAIRDRRRALQRHRRHPTMDNLIAFKRLRARARQLIRQSKQDSWEKY
FT                 VASIGSRASPSKVWSQVRRLFGYRTSAAIPSLQIQGTVCTDATAIAEHMAE
FT                 HYARNSATAAYSADFRALKERVERRRLSFHTRRQETYNSPFSEWEFQTALS
FT                 ACPDTSPGPDRIHSQFIRHLPAEFQHQLLALFNHLWAEGAFPSQWRESITI
FT                 PVLKPGADPQVADSYRPISLTNVLCKLLERMVSRRLMWILEERGLLAPQQG
FT                 GFRQGRSTIDNLVSLESAIRTAFSRREHLVAVFFDLRKAYDTTWRHHILAT
FT                 LHGWGLVAPSYFYSKFPLPPLVSGEGWGLSQLPPHPGERCPTGLRPQCPIV
FT                 FSGNKRSCCGCGVIGHLLPVRRFTLTQSSTWVVNYFRSRKHIAFWAWFFDA
FT                 RLTWVPHLRQLRQKCWRHLNILRCLSHTGWGAARSTLLQLYKALIQSRLDY
FT                 GSLVYDSAAPSALRVLDPIHHTGVRLATGAFRTSPVPSLLAEAGVPPLRYR
FT                 RQRLLVCYIARVHASPHHPNHRLLFPLSALPSPRRRPRSGLPIAVRVRSLL
FT                 SSLDSLPLPPPFHYSPRIPPWTIPRLELRLDLSRDSKASIPPLILRRRFQA
FT                 LLDTFHGANIIYTDGSLVDGHAAYAFVCGEHIEQRSLPCGSSIFTAELVGI
FT                 LRALEHLRALPRGSFVICSDSLSGLQALDQFLPKHTVVRAIQDAVFALGES
FT                 GRSVAFVWTPGHIGIPGNERVDQLAKQATTSRPLDIGLPDSDLRSQLTRKV
FT                 LGVWNSEWADSTEPNKLRVVKPSTAAWKTSLRASRRESVVLCRLRIGHTWL
FT                 THGHLLRREDPPQCRCGAPLTVAHILLECRNLAAKRRNFNIPDALQLALAD
FT                 NASMVDSVLNFIRECGFYKSI"
XX
SQ   Sequence 5941 BP; 1217 A; 1783 C; 1468 G; 1464 T; 9 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aacctcaatc tcaaggtgtg       240
     ctatgtgccg aggagatgca tggctgttga ggttgaacag tcgctagcga gcaacctctg       300
     aggaacctgc cgcacctcag ttgtataagg cttacccagg caagcggggc tctgcctggg       360
     tggacctkta gtccctagct gctcgtggga acaccatgaa aagatcccgt aacgttgccg       420
     gacgtataac cggcatctct aagagaggtc gaggcgaata caatgccgca gaatgtgacc       480
     cccaaacgtt tccttccctt gccacaccat gggaggaacg tcgggccaga catcagggtg       540
     aggcttatgc cccgaaatac cttgtatgta sccgtaatga tggagaatca ttcaagacta       600
     caaagccctt gttcttcgtt gagaacttgg aggacaagtt cggtgaggtt gaagggatgt       660
     cgaaaatgcg ctctgggtca gtcttaataa cgacgtcatc cccagcccag tcacgggcct       720
     tgcttgcctg tgacaagctg ggtgatgttt ccgtaacgat aacgccacac aagaccttga       780
     acatggtcca ggggataata ttccataaag acctgttgct gcaatctgat gaagaactac       840
     gtgccaactt ggaacgccgg ggagtacatt ttattcggcg agtccatagg ggtccgaagg       900
     acaacagggt cgccaccggt gcctttatct tggctttcga gggtgattca ttgcctgaga       960
     aagtcaaggt gatgatctac cggtgtgacg taaagcccta cgttcctccc cctatgcgtt      1020
     gtttcaagtg ctggaggttt gggcatatgt cctcccgatg tgatgccaat cctacatgtc      1080
     gggagtgcgg acgtgcagtc catccgaacg tcccttgcac ccctcctcca gtatgtgtaa      1140
     actgcggcca gaatcactcc ccttgctcac ctacgtgctc agtattgcag caagagcgga      1200
     agattatgga atataagacc cgggacagac tgacctactc agaggcaaaa cgcaagtatc      1260
     aaaagctcca tcctgtacat ctgaccaatt cctatgccac agcagcctca tcgtcatcta      1320
     cagtgcctcg tttaccgtgt actcaaccac tgccagtggg ctcccacgcc caatcaacta      1380
     cccctgcccc cttgacagct gggggcactt cctcttcggt ggctcccact cttttcactg      1440
     tgggagcaac aaccgctcaa acatcgggga caccagtccc cacctctaag ccggagaagg      1500
     agaagccttc tccggcccct ctcgctcgga aggggtccct tgggacgctc ccttctgagg      1560
     cttctccaca tggcaaagag gatcccagca aattgctgma ggatcccctt gctgctgatc      1620
     gaagggcctc ctgctcttcg tcagcccccg aggccgtgtc tgagaagccc tcccggccct      1680
     taaaacctaa gggccagcga gaggctaaga aacagaccac aaagaaaaaa gaaaccttgg      1740
     tggctccaaa gccacagata cccacatcct ctggttcaga ggatgaagtc aagatcctcg      1800
     cwtcccccga ggatcttgca mttactgatc cactagaccc tatggatcat gacctatwga      1860
     ttctgagcac aaggcagacg acgatgcaat ggaataacct gctcctcagc tattattatg      1920
     gattctcagc taggagacaa agttattcta caatggaatt gcggcggttt cttcaaccgc      1980
     atagctgagt tgcagcagtt gttgtgccgc atcccggtgt tttgtctagc actgcaggaa      2040
     acgtggtttc ctgttcagag gaccccagcc cttcgaggct atcggggcta ttaccgtaac      2100
     cgggctacat gcgatagagc ttcaggtggt gttgctgttt acatcctcgc aactgtccct      2160
     agtgctgctg tgcctctcca aacgacccta gaggcagtcg ctgttcgcat ccgggcgggg      2220
     caggaattca ccgtctgttc catttacctt cccccggatg cagctgtctc tatcactgac      2280
     gttgctgcag tgattgcgca actaccccca ccatttctcc tcttggggga ttttaatgcc      2340
     caccacccat tgtggggcgg gacgcagacg acagttcgcg gtagggatgt agagacactt      2400
     ctgtcacagc aggacatctg tctcttaaac actggggctc ccacgcattt ctgcgtggcg      2460
     cgaggcacct actcggcaat cgacctctct ctmtgtagtc cgagtctgct cccacatttc      2520
     cgctggagga cccacgatga cctttgcggc agcgaccatt ttccgatcct tgtgtcgcac      2580
     ctgcacttcc aacctgcagg cagcccacct cgatggtctc tccgtcgagc taattggcag      2640
     gattacacct ccactgctac ttttcctgta ccagtgcctg ccaacgtgga cacggcggtt      2700
     tgtcaagtca ctgctgctat cgtttccgcc gctgaggcca ctgttcccac cacctctggc      2760
     acccctcggc gcaagtccgt gccctggtgg acgccagaga tcgctgcagc cattcgggat      2820
     cgtcggcggg cgctccagcg ccatcggcgc caccccacca tggacaacct gatagccttc      2880
     aaacggcttc gggcccgagc tcgacagctc atccggcaga gcaagcagga cagctgggag      2940
     aagtatgtcg ccagcatcgg ctctcgcgct tcgccatcta aggtgtggtc ccaggttaga      3000
     cgcctctttg ggtaccgcac gtcagcagca atccccagct tacagatcca gggtactgta      3060
     tgcaccgacg ccactgctat tgctgagcat atggcggagc attatgctcg caactccgca      3120
     actgcagcat acagtgcaga cttccgtgca cttaaagagc gggttgaacg gcgccggctg      3180
     tccttccata cgcgccggca agaaacatac aactccccgt tcagtgaatg ggaattccaa      3240
     actgccctct cagcatgccc cgatacctcc ccgggaccag acaggatcca cagccagttc      3300
     atccggcacc ttccagcaga gtttcaacac cagcttcttg ccttgttcaa ccatctgtgg      3360
     gcagaggggg ctttcccgtc acaatggcgg gaaagcatca ctatcccagt gcttaaacct      3420
     ggtgctgatc cacaggtggc tgatagttac cgcccgatca gcctcaccaa cgttctttgc      3480
     aagctcttag aacgtatggt gagtcggcgg cttatgtgga tccttgaaga gcgtggactc      3540
     cttgctccac aacagggggg cttccgccag ggccgttcta ccattgacaa cctcgtgtca      3600
     ctggagtcgg ccattcgcac tgccttcagc aggcgtgagc atctggttgc cgtmtttttt      3660
     gaccttcgca aggcgtacga caccacctgg cgccaccata tactggctac tctgcatggt      3720
     tggggcttag tggccccttc ctatttttat tcgaaatttc ctctcccacc gctcgtttcg      3780
     ggtgagggtt ggggcctctc tcagctcccc ccgcatccag gagaacggtg tcccacaggg      3840
     ctccgtcctc agtgtcccat tgtttttagt ggcaataaac ggtcttgctg cggctgtggg      3900
     gtcatcggtc acttgctccc tgttcgccga tgacttctgc ttgtacttca gctcagttag      3960
     catcggcgta gctgaacggc ggctgcaggg tgccatccga aaggcccact catgggcctc      4020
     tacccacgga ttccagttct ccgcgcagaa aacccgcgtg atgcacttct gtcgccgtcg      4080
     ggtagttcac cctgacccag agctctacct gggtggtgaa ctacttcagg tcgaggaaac      4140
     acatcgcttt ctgggcatgg tttttcgatg cccggctgac ttgggtgcca cacctacgtc      4200
     agctgagaca gaagtgttgg cggcacttaa atattctccg atgcctcagc catactggtt      4260
     ggggagcagc ccgttccacc ctccttcagc tctacaaggc tcttattcag tcgcggcttg      4320
     attacgggag cttggtttac gactcagcag ccccttctgc cttgcgggtc ttagacccca      4380
     ttcaccacac tggtgtgcgt ctcgcgacgg gggcttttcg caccagtcca gtaccgagcc      4440
     tcctagccga agctggggtt ccccctctgc ggtatcgccg gcaacggttg ttggtgtgtt      4500
     acattgcccg ggtwcatgct tcaccccacc atccgaacca caggcttctc ttcccacttt      4560
     ctgcactccc ttccccacga cgtcggccca ggtcgggtct tccgattgcg gtccgtgtcc      4620
     gttcccttct ctcctcactt gattcccttc ctctccctcc tcctttccac tactcccccc      4680
     gtataccccc ctggacaatt cctcgcctgg agcttcggtt ggatttgtcc cgggattcga      4740
     aagcctccat tccaccactg attctccgtc gccggttcca agcactgctt gacacatttc      4800
     acggtgcaaa cattatttac acggacggtt ctttggtcga tggccatgcc gcatatgcct      4860
     ttgtctgtgg tgagcacatc gaacagcgat cattgccttg tggaagcagc atcttcaccg      4920
     cggaactggt cggtattttg agagctcttg aacacctcag agctctcccc agggggtcgt      4980
     ttgtcatctg cagcgactcc ctgagtggct tacaggccct cgaccagttt ctccccaaac      5040
     acactgtggt gcgagcaatt caagatgctg tcttcgccct tggcgagtca ggccgttctg      5100
     tcgcttttgt ctggacgccg ggccacatag gtataccagg caatgaacgc gtcgatcagc      5160
     tggccaagca ggccaccact tcacggcccc tggatattgg cctcccagac tcagacctcc      5220
     gatcccagtt gacccgcaag gtccttgggg tttggaattc tgaatgggca gactcgactg      5280
     aacccaataa gctccgtgtt gtcaagccat ctaccgctgc atggaagacc tccctgaggg      5340
     cttctcgcag ggagtcggtt gtcctttgcc ggctccgtat aggccatact tggctcacgc      5400
     atggtcacct tctgcgtcgc gaggaccctc ctcagtgtcg atgtggtgcc cctttgacag      5460
     ttgcccacat cttacttgaa tgccgcaatt tagccgcaaa gcgacgaaat tttaatatcc      5520
     ctgacgcttt gcagcttgct ttagccgaca atgcctccat ggttgattct gttttaaatt      5580
     ttatccgtga gtgtggattt tacaagtcca tttaaagttt gtgtgtgtct gtcattactc      5640
     tgtcctccac ctgcctaagt cttctaggta ggtgttttta atgtgtccca gagtggctgg      5700
     atgtgttctt atatttctgt gatcacccag caaaacactc ttgtactgtt tcagcccttt      5760
     tatcccttct tcgtttttac ttgtatcctt tcttcatatt tacctgtgct tttaaacttt      5820
     gacttgttaa cgcatttact taggaacgct taacacaatg ttttatctct aagactggaa      5880
     caagggactg ataaccattg cagtttagtc ccttccaaaa accaacaaac aacaacaacc      5940
     a                                                                      5941
//
ID   Nimb-32_LMi repbase;    DNA;    INV; 5805 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 20.01, Created)
DT   03-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5805
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 210-210 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1756
FT                 /product="Nimb-32_LMi_1p"
FT                 /translation="MNNFNLSLEPSSGMGVPLVGTNTQPSKRARVPALRTK
FT                 ECQKKISQSNRTHAGNQNVFLVMKRKEGSFEKVSPFYIEKGLEGIAGSLKS
FT                 VKRLHNGTLLIETSSSQQAANLQKATCLGEYPIETELHXTLNNSKGVVTCR
FT                 DLVDIPREELKAEWAQEGIIDVQHIMKRVDGELQKSDSFILTFNSPKLPEH
FT                 VKAGFLRLKVRPYVPNPMRCFKCQHFGHTTQGCNGVSTCGACGKPAHDGVA
FT                 CSPPPKCVNCSGEHPVWSRECSAFLEEKKIQEIKTTKRISYAEAKKIFKAT
FT                 QPPAFTTSFAAVLQKPVPKVDASTQTEVVSVATNTCVCQCTCKAAVDAVPV
FT                 PPSNTAEKATVTSIVEPLATSVVETGQKSTMAATTSTVAATKQVKLKKDPV
FT                 SPSRKLSQVINLPTISKFSYKTLLLTPLQSLWSWMSIWGTILAPKLNPHLV
FT                 QYLHLGGKKK"
FT   CDS           join(1780..2460,2522..3037,2979..3296,3251..3682,
FT                 3717..5477)
FT                 /product="Nimb-32_LMi_2p"
FT                 /translation="MAPILQWNLNGFRTHIXDLKLLAQTRPLCLCLQETHF
FT                 KASDTPILRGYTIYRKDDLTGERAKGGVAVFVSDTHHSSAIPLVTELQAVA
FT                 VEVHVGLRITVCSLYLHPQEPIDSEALTSLIEQLPHPYILLGDFNAHNVLW
FT                 GSDSTCPRGRVVECLMTSQELCMLNMGNPTHFCAATGSSQPLTFLSALQLL
FT                 QTLLSGKPLMTSTTVTTFHCGSTYRMAHHWGSSRRDGHHCLGGPHNTSDPP
FT                 YAADLSVPRSSGELRRHPVPWWSDECHMAIKARRVALRRFKGAPTTDNLTA
FT                 FRVARAKARRIIKESKKRSWQAFLSSVNRSTCSTKVWEAIRRISGKGSRLL
FT                 IAAVLKQGCLQTTPGDIAQTMAEHFANTTATASQGLAFQHIVRPWRGASWT
FT                 SGPTSHSSISCDRGEEQVGLQVQQAESYNCPFSMWELESALSVSHDTAPGY
FT                 DSIQYSMLRHLSGESKEILLACFNLIWQAGISQLWREAILIPLLKPGKAEH
FT                 FLVVIGVSPTREGRTLPSSYRSVALTSCVGKTLERMVNHCLVWMLETRQLL
FT                 SSSQCGFRRYRSTVDNLTLLESAIQQAFLRKQHCIGIFFDISKAYDTTWRR
FT                 LILEQLHQWGFCGHLPIFLQSFLSKRFLGTELVACCQTVLSRRMVSLRGVF
FT                 YHIHCQESCTVLLIRGRLCVFCSSSSTAAVTRQLQMTVQRLEEWAAKTGFQ
FT                 FSAVSVCVCVCVCVHFNRSCGIFNLPDLQLGGTILPFKESVRFLGLIFDSK
FT                 LLWLPHLRDLKTRAQKALNILKCLSHRSWGADRARLLEFYRAFVRSRLDYG
FT                 CTVYGSARPSYLKTIDAVHHEGIRLATGAYRTSPIPSLCAEAGEPPLTIRR
FT                 QLLMVRQASKILANPNSPAYQTVARPDMMRLFSNRPQATRPFGIRMQQVLE
FT                 SLGVAQVWPQTQGFNCLPPWLLQRPRVILDLVQYGRSCTPASVFTSLFYEI
FT                 LTKHCDYVAVFTDGSKQGDSVGCSVVFPDRVTKIRLPPEFTVFDAELHAIL
FT                 WAVQQMRRVASFKFLVCSDSLSALQSLQTLYPPDKVVQNIQDALSHLQSLG
FT                 KVVSFCWVPGHMGIQGNERADVAAKEACCASTVSQCPIPLHALARLLRNRV
FT                 MCRWEDEWREILNNKLRVVKSTTRPWRTSFQLRRRDEVLLTRLRIGHCPMT
FT                 HGFLLRREDPPWCGACDAPLTVHHILVECVLYSDQRAAALLPSDLPSILSD
FT                 DPTTVIRLLKFCESSGLLPKILGQHF"
XX
SQ   Sequence 5805 BP; 1416 A; 1441 C; 1424 G; 1519 T; 5 other;
     cccctcaggg gctcagcatt catttgctgg gtatgggctt gggaaccggg tcctgagctg        60
     gggactggta gtgccaccaa tcctcaggca ccgtaacctc tgggcacgct tcagcgacca       120
     ccatgtggcg cggcggtgga acattgtgtg taccagggaa tggggatctt ggcttgaccg       180
     cccgggtcct gaggaaggaa atacctctat aaaaaaaact caatcttaag gtgtgctacg       240
     tgctgatggg atgcatggct gttgaggtgg aacagtcgct agcgagcaac ctctggggat       300
     actgccgcac ctcagttgta taaggcttac ctaggcatgt ggagctctgt ctaggcggac       360
     atttagttcc ctagctgctc gtgggactga gatgaataat tttaatttgt ccctcgaacc       420
     ttccagtggg atgggtgtac cactggtggg tactaacacc caaccatcaa aaagggctcg       480
     ggtaccagcc ctccggacca aggagtgtca aaaaaaaatc agtcaaagta acagaacaca       540
     tgctggwaat cagaatgtgt ttttagtcat gaaaagaaaa gaaggtagtt tcgagaaagt       600
     gtcgccattc tacattgaaa agggtttgga aggcattgct ggctcactga aatctgttaa       660
     gcgtttgcac aatgggactc tgctaataga aacatctagc tctcaacaag ctgcaaacct       720
     tcaaaaagcg acttgccttg gggaatatcc cattgagaca gaactacacm acactctgaa       780
     taacagcaaa ggagttgtca cgtgtaggga ccttgtggac attcccaggg aagaattaaa       840
     ggctgagtgg gcacaagagg gcatcattga tgtgcaacat ataatgaaaa gggtggatgg       900
     agagctacag aaatcggact cgtttattct tacatttaat agtccaaagc tccctgagca       960
     tgttaaggca ggatttctgc gactaaaagt aagaccttat gtgccaaatc ccatgcgctg      1020
     ctttaaatgc cagcactttg ggcacacaac acagggatgt aatggagtat ccacctgtgg      1080
     tgcatgtggt aaacctgccc atgatggggt cgcttgttca ccacctccaa agtgtgtgaa      1140
     ctgttctggg gaacaccctg tgtggagtag ggaatgcagt gcttttttgg aagaaaagaa      1200
     gattcaagaa attaaaacta ctaagcgcat ttcctacgca gaagccaaga agatcttcaa      1260
     ggccacacaa cctccagcat ttaccacctc cttcgctgct gtccttcaaa agccggttcc      1320
     gaaagttgat gcttcgacac aaacggaggt tgttagtgtt gccactaaca cctgtgtttg      1380
     tcaatgcact tgcaaagcmg cggttgacgc agtgcctgta cctccttcaa acacagcgga      1440
     gaaagctaca gttaccagca ttgttgagcc cctggcaact tcagtggtag agactggcca      1500
     aaaatccacc atggccgcta ccacatctac tgtagccgct acaaagcaag tgaagttaaa      1560
     aaaggatccg gtaagtccca gtcgcaagct aagtcaagta ataaaccttc cgactatatc      1620
     gaagttctca tacaagacac ttcttctgac tccactccag agcttatgga gctggatgtc      1680
     aatctggggc acaattctcg ctccaaaact gaacccccac ctagttcagt atctccacct      1740
     cggcggaaag aaaaagtgaa ggtgctacct ccataaccca tggctcccat attacagtgg      1800
     aacctgaatg ggttcaggac ccacatagma gacctaaaac tgctagcaca gacacgtccc      1860
     ctatgcttgt gtttacaaga aacccacttc aaagcttcgg acacccctat actcaggggc      1920
     tataccatct accgtaagga tgaccttact ggcgagaggg ccaaaggagg agttgctgtg      1980
     tttgtcagtg atacacatca ctcctcggcc attcccttgg ttactgagct ccaggctgtg      2040
     gcagtggaag ttcatgtggg tctgaggatc acggtttgtt ccttatattt acatccccag      2100
     gaacccatag actctgaggc tctcaccagt ctcatagagc aactccccca cccatatatt      2160
     ctactgggag actttaatgc ccacaatgtg ttatggggct ccgactctac ttgtccaagg      2220
     ggtcgagttg tagagtgcct catgacgtcg caggaactct gcatgctcaa catgggcaat      2280
     cccacacatt tttgtgctgc cacgggaagt tctcagccat tgacctttct ttctgctctc      2340
     cagctcttgc agactctgct cagtgggaag ccactgatga cctccacaac agtgaccact      2400
     ttccactgtg gatccactta ccggatggcc catcattggg gcagcagccg ccgagatgga      2460
     taactagcag ggcaaactgg cctttgttca gtcgtctggc tgtactwgaa caccgagatg      2520
     acatcactgc ttgggtggac cacataacac aagtgatcca ccatatgctg ctgacctttc      2580
     tgttcctagg tcatcgggtg aacttcgcag gcatcctgtt ccttggtggt cagatgagtg      2640
     ccacatggca attaaagcca ggcgtgtggc cctacgacgg tttaagggtg ctccaacaac      2700
     tgacaacctt acggccttta gagttgcaag agccaaggct cgacgcatta ttaaggagag      2760
     caagaaaagg tcatggcaag cattcctgag ctctgtcaac cgctccactt gttccacaaa      2820
     agtatgggaa gccatcagga ggatttctgg taaaggcagt cgtttactta tcgcagctgt      2880
     gctgaaacag gggtgtctac aaacaacacc tggagacatc gcccagacaa tggcagagca      2940
     ttttgcaaat actactgcca cggctagcca gggtctagca ttccagcata tcgtgcgacc      3000
     gtggagagga gcaagttgga cttcaggtcc aacaagctga gtcctacaac tgccctttct      3060
     ccatgtggga gctggaatct gctctgtctg tgtctcatga tactgcccct ggctatgaca      3120
     gtatacagta cagtatgctt cggcacctgt ctggagaatc aaaggaaatc ctccttgcat      3180
     gttttaattt gatatggcag gctggcattt cccaactgtg gagggaagca attttaattc      3240
     cgcttcttaa accagggaag gccgaacact tcctagtagt tatcggagtg tcgccctaac      3300
     gagctgtgta ggaaagaccc tggaacgaat ggtcaatcac tgcctggtct ggatgttaga      3360
     gaccaggcag ttgcttagca gctctcagtg cggtttcagg agataccgct ccactgtcga      3420
     caacctgacc ctgttagagt ctgctattca gcaggctttc ctacgtaaac agcactgtat      3480
     tgggatcttc ttcgacatca gtaaggcgta cgacactacc tggagacgcc ttattctaga      3540
     gcagctccat cagtggggct tctgtggcca cctccccatt ttcctacagt ccttcctgtc      3600
     taagcgtttt ttaggtaccg agttggtggc atgttgtcag accgttttga gcaggagaat      3660
     ggtgtccctc aggggagtgt tttaagtgtt accctctttg ctatagccat taatagtatc      3720
     acatccactg tcaggagtcc tgtacagtgc tccttattcg tggacgactt tgcgttttct      3780
     gttcttcctc cagtactgct gctgtgactc gtcagttgca aatgacagtg cagaggctgg      3840
     aggagtgggc tgcaaagacg ggttttcagt tttctgctgt aagtgtgtgt gtgtgtgtgt      3900
     gtgtgtgtgt ccattttaat cgttcttgtg gtatttttaa tcttcccgat ctgcaactgg      3960
     gtggcaccat tctccctttt aaagaatctg tgaggtttct gggcctcatt tttgactcca      4020
     aacttttgtg gctcccacac ctgagggatc tgaaaaccag ggcccagaag gcgctgaaca      4080
     ttttgaaatg cctgagccac aggtcgtggg gagcagatag ggcacgtctg ctcgagtttt      4140
     atagggcttt cgtacggtcg cggctagatt atgggtgcac agtctatgga tcagcgagac      4200
     cttcatatct gaaaaccatt gacgctgttc accatgaggg gattaggctg gccaccggtg      4260
     cttacaggac cagccccatc cccagtctct gtgctgaggc tggcgaaccg ccgctcacca      4320
     tccggcggca actcctcatg gtgcgtcagg ccagtaagat acttgctaat ccaaattctc      4380
     cagcttatca aactgttgct cgccctgata tgatgcgcct gttctccaat cgcccacaag      4440
     caaccaggcc gtttgggatc cgcatgcagc aagtgctgga gtcacttggt gtagctcaag      4500
     tatggcccca aacccagggt tttaactgcc tgccaccctg gctactgcag aggcccagag      4560
     taattttaga tttagtgcag tacggcagaa gctgcactcc tgccagtgtt tttacctcat      4620
     tattttatga aattttaact aagcactgcg actatgtagc tgtattcacg gatgggtcta      4680
     aacaagggga ctctgttggt tgctctgttg ttttccctga tcgggtcacc aagatccgac      4740
     ttccgccaga gtttactgtc tttgatgcgg aacttcatgc cattctgtgg gcagtgcagc      4800
     agatgagacg tgtagcaagt tttaaattcc ttgtttgctc agactcactg agtgcccttc      4860
     aatccctcca aaccctgtac ccaccagata aagtagtcca gaacatccag gacgcccttt      4920
     cccacctaca aagtctgggg aaggtggtgt ccttctgctg ggtcccaggt catatgggca      4980
     ttcaagggaa cgaaagggca gacgtcgcag caaaagaggc gtgttgcgcg agtacggtat      5040
     ctcagtgtcc tattcccttg catgctctgg ccagactgtt gaggaacaga gtcatgtgtc      5100
     gatgggagga tgagtggcgg gaaatactga acaacaagtt gcgagtcgtg aagtccacca      5160
     cacggccgtg gcgcacatcc ttccaactgc gcaggcggga tgaagtcctc ctcactcgtc      5220
     ttcgtatcgg tcactgtccc atgacacacg gcttcttgct ccggcgggag gatcctcctt      5280
     ggtgtggtgc ttgtgatgca ccgttaactg tgcatcacat tttggttgaa tgtgttttat      5340
     attcagatca aagggcggca gctcttttgc cgagtgatct gccctctatt ttaagcgatg      5400
     atccaacgac tgtgattcgt cttttaaaat tttgtgaatc gtcaggctta ctccctaaaa      5460
     ttttagggca acatttttaa ggaatcatta ggttgactag ctcttccatc tttttgttat      5520
     tggtcagcta gtcgtttcca cctatgactc ccatcaatgt tcttagtttt actggtcagt      5580
     tttacattgg gcacacctgt ccataccaat ccatgactta aacaagtttt taatgtgcgt      5640
     gttcttacgg gtagatcttg aaggaaacgg tggcactttt tagacggctc ctgattttcc      5700
     tcaggtcccg tttctcatgt tctaattcca tttgcccctg agagttctgt atgggcgctg      5760
     ataacctcga tgttgagtgc ccctcaaacc cacaaacaac aacaa                      5805
//
ID   Nimb-33_LMi repbase;    DNA;    INV; 5875 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 20.01, Created)
DT   03-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5875
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 211-211 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2007..5582
FT                 /product="Nimb-33_LMi_2p"
FT                 /translation="SPCFRGYHLYRTDDLSGDRAQGGVAVFVKDTLHSSRV
FT                 PLTTTLQAVAVTVHFVSFQLTLCSLYLPPHGPLDEDALXALVDQLPRPFLL
FT                 LGDFNAHNTLWGSVSTCPRGRVVERVLRSGSSCLLNTGAMTHFCAATGSFS
FT                 AIDLTVCSPVLADSVQWEVADDLHSSDHFPITVHLLQRLQPESYPTKWLLS
FT                 KADWVLYSQLAVLEHRDNIHDWVDHITAVIHSAADASIPKSSGHSRRSPVP
FT                 WWNDECRRAIRDRRSALRRFKRSPSAENLAAFRQARARARRILQESKKRSW
FT                 YEFLKSINRSTSATAVWDSVRKISGKRSSCPLAAIKDDGILKVEPVEIAQT
FT                 MAXHFYKITSSPSPVPGFHAYRAVQERRRLDFASSNDEAYNALFSMWELDT
FT                 ALASARETAPGPDSIHYGMLRHLNSESKTVLLDFFNQLWTEGVYPIPWRES
FT                 IMIPILKPGKDRTLPDSYRSVALASCVGKTLERMINSRLVWTLESRNLLSR
FT                 FQCGFRRYRSTLDNLTFLEAAIQEAFLRKQHLISIFFDIHKAYDTTWRHTI
FT                 ISQLHEWGFRGRLPTFLRSFLADRCFRYRVRNALSDKFPQIHGIPQGSVLS
FT                 VTLFAIAINGITSTVRNPVQCSLYVDDFAVFCSSSSPACASRQLQLTLKRL
FT                 EDWSARTGFNFSPEKTVCVDFNRGRSLFTPPQLLLRDTVLHFQETVWFLGL
FT                 LFDDKLTWLPHLKELKIKALKALDIMKCLNGKNWGADRSCLLQFYKSFVRS
FT                 RLDYGCVVYGSASPTSLKMLDSVHHEGIRLATGAYRTSPIPSLCAEAGEPP
FT                 LYVRRRFLIAKHALKLRSFPSSPAFSVTIDIPAPLKRLYNARQRGSKPFGI
FT                 RAQQHLLDLGVPPINIQRQGWCKAPPWLLVKPNLILDLTECNKPFTPDYVF
FT                 KDKFRAILNSHHSFNVIYTDGSKQGDTVGCSVVFPTRILRYRLPCQFTVFD
FT                 AELYAVLKAVEHMKRHTGSTFLLCSDSLSALQTIQHLYPADKTVQNIQDIL
FT                 LQLQRQGKVVSFCWVPGHVGIRGNELADTAAKEACRLPNVADCPLPLRASL
FT                 SFLRSSVMRLWDQEWFAVVDNKLRSIKDTVRPWRTSVQPVRCAEVCLTRLR
FT                 IGHCPLTHRFLLCGDEPPTCDACGVLITVQHILTTCVSYDAAREQASLSDD
FT                 LRSILGDSXMTVARVLRFCVLADLLPKILGRRF"
FT   CDS           join(342..1355,1178..1885)
FT                 /product="Nimb-33_LMi_1p"
FT                 /translation="MRGSAWVDSVSLATRGTPMESFQFFSDAPGGSDGPPV
FT                 SIPSHPNKRSREGSSPERAPQKLRFSQRNRAQTCQNVFVIVRRVEGSFAKV
FT                 SPFYIQKALDGITSGLKSIKRLRNGTLLIETATSGQVQKLLQAKSLGEYPV
FT                 IAELHKTLNSCRGVVSCEDLMNEDVSVLQQEWASEGVTEVQTVMKRVNGNL
FT                 EKTSTFILTFNSQALPSHIKAGFLRLKVRPFYPNPLRCFKCQRFGHTTVAC
FT                 NGRATCGNCGQSAHETGVDCTSPPVCVNCSNSHPVWSRDCPTYKDEKKIQE
FT                 IKVTRRVPYAEAKKQFQAMQPPSFVTSFASAVKQQRPKLVCQLRRKRLPHL
FT                 QGREKNSGNKSNASCALCRGKEAVSSHATSIIRYVICISCETAAAKVSVST
FT                 QTEVATAATNTCSCCCTCQKPDPATPAPARDSATQTSQSDAALPLPPTATV
FT                 PPALTSAPQEELSGLSTSKAKRASRSKAKSGEVELHQPAMKSAASTAAKDL
FT                 APKQPANKAAATVAAATVADDLVTKHPAVKSAATAAADDLAMEVVLLGDPP
FT                 SPPGPPPGTPGSPTRSKGSVKPILIKR"
XX
SQ   Sequence 5875 BP; 1368 A; 1509 C; 1447 G; 1542 T; 9 other;
     cccctcaggg ggctcaacat tcagttgttg agtacgggct tggcgaaccg gggtccccga        60
     gctggggact gataatgcgc caacagtcct ctgtcaccgt aacctccggg taggcttcaa       120
     cgaccaccac gtggcgcagt ggtggaatgt cgtttgtccg gagaccgggg atcttggctt       180
     taccgcctgg gtcgcgagga tggtaaaacc tctctaaaaa aacctaaatc ctaaggtgag       240
     cttcgcgccg aggggatgca tggctgttga ggcagaacag tcgtaagcgg gcgacctctg       300
     aggaatctgc cgcacctcag acgtataagg cttgcccagg catgcggggc tctgcctggg       360
     tcgacagtgt ttccctagct actcgtggga cgcccatgga gtcctttcag tttttttctg       420
     atgctcccgg aggatcggat gggccaccgg tgagcattcc ttcccatcca aacaagcgaa       480
     gtcgtgaggg cagctctcct gagcgtgctc ctcaaaaact tagatttagt cagaggaaca       540
     gggcacaaac gtgtcaaaat gtttttgtca tagtaagaag agtggagggt tcctttgcga       600
     aggtgtcccc attctacatt cagaaggcac ttgatgggat tacgagtggt ttgaagtcca       660
     taaagaggct tcgtaatggt acgctgctga tagaaactgc gacctctggt caagtacaga       720
     aacttcttca agcgaaatct ctgggtgaat acccagttat tgcagagctg cataaaacct       780
     taaattcttg tcgcggggtg gtatcatgtg aagatctcat gaatgaagat gtcagtgttc       840
     tccaacagga atgggctagt gaaggcgtca cggaagtgca aactgtaatg aagagagtga       900
     atggaaatct tgagaagact tctaccttca tcttaacgtt taattcacag gccctgccca       960
     gtcatattaa ggctggattc ttacgtctaa aggttcgtcc cttttatcca aaccccttgc      1020
     ggtgcttcaa gtgccaacgg tttggtcata ctacggttgc gtgcaacggt cgtgctacgt      1080
     gtgggaactg tggtcagtca gctcatgaga caggtgtgga ctgcacctct ccaccggtat      1140
     gtgttaattg ctccaactca catccggttt ggagtagaga ttgccccacc tacaaggacg      1200
     agaaaaaaat tcaggaaata aaagtaacgc gtcgtgtgcc ttatgccgag gcaaagaagc      1260
     agtttcaagc catgcaacct ccatcattcg ttacgtcatt tgcatcagct gtgaaacagc      1320
     agcggccaaa gttagtgtgt caactcagac ggaagtagca actgctgcta ccaacacctg      1380
     ctcctgttgt tgcacgtgcc aaaagccaga tccagctact cctgcgcctg ccagggactc      1440
     agccacacaa acatctcaga gtgatgcggc cctgccgtta cccccaacgg caactgttcc      1500
     cccagcactg accagtgcac cccaagaaga actttcaggt ttatcgacca gcaaagccaa      1560
     acgtgcctca aggtcaaagg ctaaatctgg tgaagtggaa cttcaccagc cagcaatgaa      1620
     atcagcggcc tccaccgctg ctaaagattt agcaccgaaa cagccagcaa acaaagcagc      1680
     agccactgtt gccgctgcta ctgttgctga cgatttggtg acgaaacatc cagcagttaa      1740
     atcagcggcc acggctgctg ctgatgatct tgcgatggag gtggtccttc tcggggatcc      1800
     accaagtccc cctggcccac cgccagggac tccgggctcc ccaacaagga gtaaagggtc      1860
     agtaaagcca atccttatta aaaggtaatg gacatactgc agtggaattt aaatggcttc      1920
     agaatccatc tamacgaatt aaaagtcctc acacgggccg ggcctgtgtg tctgtgcctc      1980
     caggaaacac attttaagga atctgatcgc cctgttttcg gggctatcac ttatatcgta      2040
     ctgatgacct cagtggcgac agggctcagg ggggagtggc ggtgtttgtc aaagacacac      2100
     ttcactcttc gcgtgtaccc ctcactacca ccctacaagc agttgctgtc acagtgcatt      2160
     ttgtgtcctt tcagttaacg ctttgctccc tctatctccc gccacatggg ccgttggacg      2220
     aagatgccct tttwgcactg gtcgatcaac ttccccggcc gtttttgctc ctgggagatt      2280
     tcaatgccca taacactctt tggggtagtg tgtctacctg tcccaggggc cgagtggtcg      2340
     aacgggtact ccgwtcaggc tcttcctgtc tcctgaatac gggtgcgatg acacattttt      2400
     gtgcagcaac agggtccttt tcagccattg acctgacagt ctgttctcct gttcttgcag      2460
     attctgtcca atgggaggta gcagacgacc tccactccag tgaccacttt cctatcactg      2520
     ttcaccttct acagcgattg caacctgaga gttacccaac maagtggttg ctcagtaagg      2580
     cagattgggt tctttatagc caactagctg ttcttgagca tcgggacaac attcatgact      2640
     gggtggatca cataacagct gtgatacact cagctgcaga cgcatctatt cccaaatcgt      2700
     caggtcacag caggaggtca cccgttccct ggtggaacga tgagtgtcgg cgcgccatac      2760
     gcgaccggcg ctcagcgctg cgtagattca agcgctctcc atcggcagag aatcttgcag      2820
     cctttcggca agcgagggca agagcccgac gaatattgca ggagagtaaa aagcgttcat      2880
     ggtacgagtt tctgaagtcc attaatcgtt ccacttccgc cactgcagta tgggattccg      2940
     taaggaaaat atctgggaaa aggagttcgt gcccgttggc tgccataaag gacgatggaa      3000
     tccttaaagt tgaaccagtc gagattgctc agacgatggc amagcacttt tacaagataa      3060
     catcgtcccc gagtccagtt ccaggtttcc acgcctaccg cgcggttcag gagaggagac      3120
     gccttgattt cgcctcttct aatgatgagg cttataacgc tttgttttct atgtgggagc      3180
     tggacacggc attagcttct gctcgcgaga cggcccctgg gcccgactcg atacactatg      3240
     gcatgctacg gcatcttaat tcagagtcta agactgttct ccttgacttt tttaatcagt      3300
     tatggacaga aggggtatat cccatcccct ggagggaatc cataatgata cccattctta      3360
     aaccggggaa ggaccgcacg ctccctgata gctatcgtag tgtcgcttta gccagctgtg      3420
     tcggtaagac gctggaacga atgatcaact cgagacttgt ttggactctc gaatctcgga      3480
     acctccttag tcgcttccaa tgtgggtttc gcaggtatcg gtccactctt gataacctca      3540
     ccttcctgga agcggctata caggaggcgt tcctgcgaaa gcagcaccta atatcaatct      3600
     tcttcgacat tcacaaggca tatgacacta cgtggcgaca cactatcata agtcagttgc      3660
     atgaatgggg ttttcgggga cgccttccca cttttctgcg ttccttcctt gctgaccgtt      3720
     gctttcggta cagagttagg aatgctcttt ccgataaatt tcctcagatt cacggaattc      3780
     cgcaggggag tgttttaagt gtcactttgt tcgcaattgc gatcaacggt ataacgtcta      3840
     ctgtaaggaa tcctgtgcaa tgctccttgt atgtggatga ctttgctgtg ttctgctctt      3900
     cttctagtcc cgcatgtgct tcacgccagc tacagttgac acttaaaaga ctagaagact      3960
     ggtctgctcg aacaggtttt aacttctccc ctgagaaaac cgtatgcgtt gattttaatc      4020
     gtggccgttc actttttacc cccccgcaac tactgttgcg ggatactgtt ttacattttc      4080
     aggagacggt gtggttcctg ggtctcttat ttgatgacaa acttacttgg ctgccccacc      4140
     tgaaggagct caagataaaa gccctgaaag cactggacat catgaagtgc ttgaacggaa      4200
     aaaattgggg tgcagacaga tcctgcttgc tgcaatttta taagagtttc gtgcgctccc      4260
     gtctcgacta cggttgtgtg gtctatggct cggcatcccc aacgtctctg aagatgttgg      4320
     attctgtgca ccacgagggt atcagattgg ctacgggagc ctataggaca agccctatac      4380
     ctagcctgtg cgccgaggca ggagagccgc cattatacgt ccggcggcgt ttccttattg      4440
     ctaaacacgc cttaaagctc cggtcgtttc cgtcgtctcc ggctttttct gtgactattg      4500
     acatcccggc ccccttgaag cgactctaca acgcacgaca acgagggtcg aaaccatttg      4560
     gcatcagagc gcagcagcat ttactggatc tcggtgtgcc tccgatcaac atacagcgtc      4620
     agggttggtg caaagcgcca ccctggctgt tagtgaagcc caacctcatt ttagacttga      4680
     ctgagtgcaa caaaccgttc actccagatt atgtttttaa ggacaagttt cgtgccattt      4740
     taaatagcca tcattcattt aatgttattt atacagatgg gtcgaaacag ggggatactg      4800
     ttgggtgctc tgtagtgttc cctaccagaa tcctcagata ccgtctgcct tgtcagttca      4860
     cggtatttga cgcagaactt tatgctgttt tgaaagcagt ggagcatatg aaacgtcata      4920
     ctgggtctac ctttctgctt tgctccgatt cactcagtgc tctgcagacc attcagcatc      4980
     tgtacccagc agataagacc gtccagaata tccaagatat ccttttgcag ttgcaacggc      5040
     aaggaaaggt ggtttccttc tgctgggtac ctggccatgt gggtatccgt ggaaacgagt      5100
     tggccgatac cgcggccaag gaggcctgtc ggcttccgaa cgtagctgat tgtcctctcc      5160
     ctctccgtgc ctcgctgtca tttcttagga gctctgtcat gcgcctctgg gaccaagaat      5220
     ggttcgccgt cgtggataat aagttgcggt caataaaaga cacagttmgg ccctggcgta      5280
     catccgtaca gcctgtcagg tgtgctgaag tctgcttaac aagacttcga ataggacact      5340
     gccccctgac gcatagattc cttctttgtg gcgacgagcc ccctacttgt gatgcttgtg      5400
     gtgtgctgat aaccgttcag catattttaa ctacttgtgt ttcctatgat gccgcgaggg      5460
     aacaagccag tttgtcggat gacctccgtt ccattttagg tgacagtgaw atgacagtgg      5520
     cacgcgtttt acgattttgt gttttggccg acctcctacc aaagatctta ggtcgacggt      5580
     tctaaaatat agatagagga agataggatc gttcggtcca tccctctatg tttagcccgc      5640
     cgtcttttta gccttgtccc ccatttgtct gttttgtcta gtktcttatt agtgccactg      5700
     wacctttctt tattatgcat atgatgtagg aggaagagcg tacgtccttt cgtattgtct      5760
     cttcccttgc ctgtctcctg caccatttag cggtattaga ctcatctctt cctagtatgg      5820
     gcgctgatga ccacgatgtt gagcgcccta aagccccaat aacaacaaca acaac           5875
//
ID   Nimb-34_LMi repbase;    DNA;    INV; 5905 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 20.01, Created)
DT   03-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5905
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 212-212 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           461..1144
FT                 /product="Nimb-34_LMi_1p"
FT                 /translation="MRPHITHARSLPWPHHGRNVGLDLKMSHILPNSSCVA
FT                 ARMVSLLRLQSLFSLLNILRTSTAKFQMSKMRSGAVLIEAASPAQSRALLA
FT                 CDKLGDVPVSITPHKSLNMVQGIIFHKDLLLQSDDELRANLERRGVHFVRR
FT                 VHRGPKDHKVATGAFILAFEGDTLPEKVKVMIYRCDVKPYIPPPMRCFKCW
FT                 KFGHMSSRCTSTLHAGTVDVQHTRTLHVHRLPSALTVA"
FT   CDS           join(1245..1886,1876..5595)
FT                 /product="Nimb-34_LMi_2p"
FT                 /translation="KEVRATSPRHHDASFAAVTSSPSSLVTAADTSVSLSA
FT                 GPQGRQLKPAPTVVGGSIPPPAPKAIASGAAPNPPSEKHQPSPAALIQKGS
FT                 LGTLPSAASASAGTGTSQQQATSPAAGHRASRSPSVTETEAESAKPLLPAK
FT                 PPRDKRVRKKKDKKIRLKKPRWPLCHPPPPPLPLRTRWRYLHPPRISLSWM
FT                 HQTRWTSKLMHRYRWMQTMLRCNAGVMHNIFSFMPSQLSDTVILQWNCGGF
FT                 FTHLAELRQLLSVTPALCIALQETWFPAMRTPALRGYRGYFCNRSVYNRVS
FT                 GGVCVYVLTSVYSEPVPLQTPLEAVAVRVRTTQEITVCSLYLPPDGDVSMA
FT                 VLAALISQLPPPFLLLGDFNAHNPLWGGSTISGRGRVVEDLLSQLDLCLLN
FT                 TGAPTHFSVAHGTFSAIDLSICSHSLPPSIHWSVHDDLCGSDHFPIFLSLP
FT                 QRQSPARPPRWVLHRAHWEGYTSAAIVGPPPLDTIDVVVESATRSILSAAE
FT                 ATIPRSSGRPRRKTVPWWSPEVADAIKDRRRALQRYRRHPSLEHLITFKRL
FT                 RARARHLIRRRKRECWETYVSTIGSGISTSQVWSRIRRLQGYTTTAIPGIS
FT                 VNGVICTDPATLAEMFAEHYARASASANYPPAFRTLKERVERQPISFTARR
FT                 TEAYNAPFSEWELLGALAQCPDTAPGPDSIHAQMLRHLSAESLGNILAVFN
FT                 RIWCDGVFPSQWREGIIIPVIKPGKNPAHLDSYRPITLTNVLCKLLERMVS
FT                 RRLCWILETRGLLAPCQGGFRQGRSTTDNLVYLESAIRTAFSRRQHLIAIF
FT                 FDMHKAYDTTWRHHILTTLHGWGLRGSLPIFIKNFLAVRTFRVQVGASRST
FT                 SHVQENGVPQGSVLSVPLFLVAINGLATAVGSSVSPSLYADDFCIYFSSSS
FT                 TQVAERRLQGAIRKAQSWALAHGFQFSAAKTSVMHFCRRRTVHPHPELYLD
FT                 DHLLQVVETHRFLGLVFDARLTWLPHIRQLKQECWRHLNVLRHLGHTTWGA
FT                 DRSTLLRLYTALVQSRLDFGCIAYGSASPSALHLLDPIHHCGVRIATGAFR
FT                 TSPVNSLLVEAGVPPLGIRRQHLLVAYAANVYCSPGHPNRRLLFSDVVVRP
FT                 HQRRPRSGHTIAFRVRSLLLELESFPLPSPYRVHARTPPWCLPRPCTRLDL
FT                 AHGPKDSVPLEALRRHFSAVVAEFPGYDLVYTDGSLVDGCVGFAYTHGDRV
FT                 EQHSLPNGCSVYTAELVAIHRALVHIRSCSGESFLICSDSLSSLRALDQCY
FT                 PRSPLVLAIQETLCAIEQSGRSVVFIWSPGHVGIPGNERVDRLARQAVSAS
FT                 ILDIGLLASDLRSLLRHRVHQRWDAEWHSLGTPNKLRVVKETTTAWRSSML
FT                 ASRRDSVVLCRLRIGHTWLTHGHLLRGEAPPQCQCGSRLTIVHILVDCPVL
FT                 AALRRXFNIPGVLSDVLRDDASAANSVLSFIRAGVFYQSL"
XX
SQ   Sequence 5905 BP; 1161 A; 1736 C; 1512 G; 1492 T; 4 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaatga       120
     ccatgttcgg cggacggtgg aacgttgtac gtttcagagc ccggggatct tggcttaatc       180
     gcccgggtcg cgaggacggt acaaacctct ataaaaaacc tcaatctcaa ggtgtgctac       240
     gtgccgagga gatgcatggc tgttgaggtt gaacagtcgc tagcgagcaa cctctgagga       300
     acctgccgca cctcagttgt ataaggctta cccaggcaag cggggctctg cctgggtgga       360
     cctttagatc cctagctgct cgtgggaaca ccatgaagga ccatgagcaa cgctggtggg       420
     cgtttaacca ccgtctctaa gagaggaaga gcagacttta atgcggccac atataaccca       480
     cgcacgttcc cttccctggc cacaccatgg gaggaacgtc gggctagatc taaagatgag       540
     ccatattctc ccaaattcct cgtgtgtagc cgcacggatg gtgagtcttt tacgtctaca       600
     aagcctcttt tctttgttga acatcttgag gacaagtacg gcgaagtttc agatgtcaaa       660
     gatgcgaagc ggcgcagtgc tcatagaagc agcatccccg gcccaatcgc gggcgttact       720
     tgcctgcgac aagctgggtg atgtccctgt gagcatcaca ccacataagt cgctaaatat       780
     ggtccaaggt ataattttcc acaaagacct gttgttacag tccgacgacg agttacgcgc       840
     caacttagag cgcagaggag tccacttcgt ccggcgtgtc cataggggac caaaggatca       900
     caaggttgcc accggtgctt tcatcctggc cttcgaaggc gataccctgc ctgagaaggt       960
     caaggtaatg atttaccggt gcgacgtgaa accttatatt cctcccccta tgaggtgctt      1020
     taaatgctgg aaattcggcc acatgtcctc tagatgtact tccacactac atgcagggac      1080
     tgtggacgtc cagcacaccc ggacgctcca tgtacaccgc ctcccatctg cgttaactgt      1140
     ggcctgaatc atcctccttg ttcgtcggat tgcaccgttc ttcgtaagga acggaaaatt      1200
     atggaattta agaccttgga ccggctttct tattctgagg ctagaaagaa gtacgagcga      1260
     cttcaccccg tcaccatgac gcctcctttg cagcagtgac atcgtcgcca tcctctcttg      1320
     tgactgcagc agacactagt gtmtctctct ccgcaggccc tcagggccgc caactcaagc      1380
     ctgcccccac ggtggtcggg ggctccattc ctcctcctgc tcccaaggca attgcttcgg      1440
     gagcagcccc caaccctccg tcggagaagc atcaaccttc tccggctgcc ctcattcaga      1500
     aggggtccct agggacgctc ccttctgcgg cttccgccag tgccggtacc ggcactagcc      1560
     agcagcaggc aacgtcgccg gctgctggcc acagggcgtc gcgctctccc tctgtcactg      1620
     agacggaggc tgagtctgca aagcccctcc ttccagcgaa gcccccgagg gataagaggg      1680
     ttcgaaagaa aaaggataag aagataaggc taaagaaacc ccggtggcca ctgtgccacc      1740
     cgccccctcc acctctgcct ctgaggacga ggtggagata cttgcatccc ccgaggatct      1800
     cgctctcttg gatgcatcag acacgatgga cttcgaagct gatgcatcgc taccggtgga      1860
     tgcaaacgat gctgaggtgt aatgcataac atcttctcat tcatgccttc ccagctgtcg      1920
     gacactgtca tcctccaatg gaactgcggc ggttttttca cccacctggc tgagctacga      1980
     caacttttga gcgtcacacc tgctctctgc attgccctcc aggaaacctg gtttccggca      2040
     atgcggaccc ctgcccttcg gggctatagg ggatacttct gcaatcgtag cgtgtataac      2100
     agggtgtcag gtggagtgtg tgtgtatgtc cttacctctg tatatagtga acctgtgccc      2160
     cttcagacac cgttggaagc agtggctgtc agggtaagga caacacaaga gatcactgtc      2220
     tgcagtctct acctccctcc agatggcgat gtctctatgg ctgtcttggc tgcacttatc      2280
     tcgcaactcc cgccaccttt tttgctattg ggggacttta atgcccacaa tcccctgtgg      2340
     ggtggttcta cgatctctgg ccgtggcaga gttgtcgagg acctgctttc tcaactcgac      2400
     ctctgcctct tgaatacagg tgcccccaca catttcagtg tggcacacgg cacattctcg      2460
     gccattgatc tgtcgatatg cagccacagc cttccgccat ccatccattg gagtgtccat      2520
     gatgacttgt gtggcagtga tcattttccg atctttttgt cactcccaca acgtcagtcc      2580
     ccagcacgcc ctcctcggtg ggttcttcac agggctcact gggaaggcta cacctctgct      2640
     gccatcgttg gccctccccc actcgatacc atcgatgtgg tggttgagag cgccacacga      2700
     tccatattgt ctgctgcgga agctaccatt ccacgttcct cggggcgccc acggcgtaag      2760
     acggtgccgt ggtggtcgcc agaggtcgct gacgccatta aagaccgtag gcgggcccta      2820
     cagcgataca ggcggcaccc ttctcttgag cacctcatta catttaaaag gctccgtgct      2880
     cgtgctcgcc atttaattag aagacggaaa cgggagtgtt gggagacgta cgtctccact      2940
     attgggtcag gtatctccac ctcccaggtc tggagccgga ttaggcgttt acagggatac      3000
     acaacaacag caatccctgg gatctccgtg aatggagtca tatgtacgga tccagccacg      3060
     cttgcagaga tgtttgctga gcattacgct cgcgcttctg cctctgcaaa ctacccaccg      3120
     gccttccgta cattaaagga gcgggtggaa cgccagccta tctcttttac cgcccgccgc      3180
     actgaggctt acaacgctcc attcagtgag tgggagctac ttggtgctct cgcacaatgt      3240
     cctgacacgg cccctgggcc tgatagcatc catgcccaaa tgctgagaca cctstccgca      3300
     gaaagcctgg gtaatatcct cgccgtcttc aaccggatct ggtgcgacgg ggtattccct      3360
     tcacagtggc gggagggtat matcataccg gtgattaaac caggcaaaaa ccctgctcat      3420
     ttggatagct atcgacccat caccctgacc aatgtccttt gtaaactgtt ggagcgcatg      3480
     gtcagtaggc ggttgtgctg gatcctcgag actcggggct tactggctcc atgccagggc      3540
     gggttccgcc agggtcgctc caccaccgac aacctggtgt acctcgagtc cgcaatccgc      3600
     acagcctttt ccaggcgcca acatctcata gccatcttct ttgatatgca caaggcatac      3660
     gatacaacct ggcgacacca catactcact actttacatg ggtggggcct ccggggctcc      3720
     ctcccgattt ttattaaaaa ctttttagct gtccgtactt ttcgtgttca agttggtgcc      3780
     tcccgaagca cctctcatgt gcaggaaaac ggggttcctc agggctctgt tttgagtgtt      3840
     cccttatttt tagtagccat taacggccta gcgacagcag ttgggtcgtc agtatcccct      3900
     tcactatatg ctgacgactt ctgcatctat tttagctctt ccagcaccca agttgctgaa      3960
     cgcagactgc agggagccat tcggaaggcg cagtcctggg ctcttgccca cggcttccag      4020
     ttttctgcgg ccaagactag tgttatgcac ttctgtcggc gtcggactgt tcaccctcac      4080
     cccgaacttt acctcgacga ccacttactt caagtagtgg aaacacatag gtttttaggg      4140
     ctggtcttcg acgcccggct gacgtggctt ccccacattc gtcagctgaa gcaggagtgc      4200
     tggcgccatc tgaatgttct tcgccacctg ggccatacca cttggggcgc tgatcgctcc      4260
     acactgttgc gactctacac agcactggta cagtcacggc ttgactttgg atgcattgcc      4320
     tacggttcag catcgccttc ggcattgcac ctgttggacc ccatccacca ctgtggggtt      4380
     cgcatcgcga cgggtgcctt ccgcaccagc ccagtgaaca gcttacttgt ggaggctggg      4440
     gtcccacctt tggggatacg ccgccaacac ctgctagtgg cttatgcagc caatgtatat      4500
     tgctccccag gccacccaaa ccgtcgtctc ctcttttctg atgtggtcgt ccgtccccat      4560
     cagcgacgcc ctagatcagg tcatacgatt gcctttagag ttcggtccct cctgctggag      4620
     cttgagtctt ttccccttcc atctccctat cgggtccatg cacgtacacc cccgtggtgc      4680
     ttgccaaggc cgtgtacccg gctggacttg gcccatgggc ccaaagactc ggttcccctg      4740
     gaggcactcc gccgccattt ctcggctgtc gtagcggagt tccctggtta tgacctggtc      4800
     tacaccgatg gttccctggt tgatggctgt gtgggatttg catatactca tggtgaccgt      4860
     gtggaacagc actctctgcc gaatggctgc agtgtttaca ctgcagagct ggtggccatt      4920
     cacagagctc tcgtgcatat ccggtcctgc tcaggtgagt cttttcttat ttgcagcgac      4980
     tccctgagca gccttagagc tctggaccag tgttacccgc ggtctcccct ggtgttggcc      5040
     atacaggaga cgctttgtgc cattgaacag tccgggcgat cggtggtgtt catctggtct      5100
     ccgggtcatg tgggcatccc gggcaatgaa cgtgttgaca gacttgccag gcaggctgtc      5160
     agtgcgtcca ttttggacat cggcctcctg gcgtctgatc tccgttcatt gttgcgccac      5220
     cgggtacatc agcgttggga tgccgagtgg catagcctgg gcacacccaa caagcttcgg      5280
     gttgtcaagg agaccacgac cgcgtggcgt tcgtccatgc tggcctctcg ccgggactcc      5340
     gtggtgctgt gtagactccg cattgggcat acgtggctca cccacggaca tctccttcgt      5400
     ggtgaggccc cgccccagtg tcagtgtggc tcccgtttga caatagtcca catcctagtg      5460
     gactgccctg ttttagccgc cttgcggcgt mgttttaaca tccctggcgt tttatcagat      5520
     gttttacgtg acgatgcttc agcagcaaat tcagttttaa gttttattcg agcaggggtt      5580
     ttttatcagt ctctctgact ggacttttcc ttgtgctgcc gtgtggttga cttttccttt      5640
     tttactccta tggtcggcca accactgcca tcggcctctt tgttgtaagg tgtctttgtg      5700
     tgatcgtctc ttttcgttta gtttcttgtc cattttgttg atgttttatg gacccagtgg      5760
     gattcccctc ccactttgca aacttaatct ctgggcgcat ttctttgacg tccgcgcttt      5820
     tatttttgac gcttcgtgat ggaatggggg actgatgacc attgtagttt tgtccccctt      5880
     aaacatccaa ataacaacaa caaca                                            5905
//
ID   Nimb-35_LMi repbase;    DNA;    INV; 5716 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5716
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 213-213 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(316..894,861..1538)
FT                 /product="Nimb-35_LMi_1p"
FT                 /translation="MDPLRNFKPPSGMGVPLGGNNTQPNKRARVASPPDLG
FT                 PHSKRGGNSYGTQNVFLIIKRKEGTFEKVSPFYIQKGLEGIAGDLKSVKHL
FT                 RNGTLLVETNNSQQAANLQKAACLGEFPIEAELHGTLNNSKGVVTCRDLVE
FT                 MTTEELKGEWAKDSIVDVQNIMKRVGGELMKSDSFILTFNSPKLPSTSRQV
FT                 SYGTPEYVKAGFLRLKVRPYVPNPMRCFKCQRFGHTTIGCKGEATCGQCGK
FT                 AAHDGVDCSPPPKCVNCSGEHPVWSRDCSVYLEEKKVQEIKTTKRISYGEA
FT                 KKIFKAMQPPSFVTSFAAVVQKSVSKADVATQTEVASVGTNTCTCQCTCKA
FT                 AAVTVSEDSKCSSDKATVVTVEELSGTLFSRGRCAELTTFQASGYSKGQHS
FT                 PFYWCCLHCKGCQAEKDTSKKSGSG"
FT   CDS           join(1729..2826,2583..3896,3722..4333,4237..5202)
FT                 /product="Nimb-35_LMi_2p"
FT                 /translation="MAPILQWNLQGFRTHVEELRILTQGRPLCICLQETNF
FT                 KPSSNPEIRGYDVYRKDDLSGERAKGGVAVFVDTACHSSLLPIQTPLQAVA
FT                 VCVQMRHRLTVCAIYLPPHDAFDEEALHDLITQLPHPFILCGDFNAHNVLW
FT                 GSETTCPRGRAIERLLLTSSVHLLNTGQPTHFCTASGSFSAIDLTLCSPAL
FT                 APTIQWEVDADLHGSDHFPIWINQPDGXEPVRRPPRWVLSRADWTLYGRLA
FT                 ELDCHANVQEWVDHVTQTIHHAAAASIPQSSGQPRRHPVPWWSDDCRLAIR
FT                 RGEQLCVGSKAGQLQRTSQPFGWRGQGVDKRFVRARNVHGSSSSIPLLVPP
FT                 KVHRYGRPSGEYPGEEEGVQLLLRLPPCNTARRAALRRFKSRPTAENLAAF
FT                 RVARARCRQTIRESKKRSWQQFLNTITRSTKSSQVWETIRRISGRGGRRPI
FT                 AAVMGNGTLQTNPRVIAQTMAEHFAAVTSTASQNPAFRRHRLSVERGSLDF
FT                 KSTIDEEYNCPFSMWELNSALLSTRDTCPGYDRIHYSMLQHLTDRNKEILL
FT                 ALFNEIWQSGHFPDSWREALMIPLLKPGKDSTCPSSYRSVALTSCVGKTLE
FT                 RMVNRRLVWMLESRQLLSRFQCGFRRYRSTFDNLALLEAAIQQAFLQRHHL
FT                 LAIFFDIEKAYDTTWRHLILRQLHDWGFRGCLPTFIKSFLSPRYFRYRIGD
FT                 TLSDRFEQENGVPQGSVLSVTLFAIAINSITSVVKCPVKCSLFVDDFSLFC
FT                 SSSNLATTTRQLQLTFAVWMNGQKRLALSFQPRSLSVFFLTVLVPFLICLN
FT                 CDLLSLLLFIQPSNDNTSVAAHLRRLDEWAEKTGFKFSTEKSVCVLFNRTR
FT                 SIFNLPELRLRDAVLHFKDTVRFLGLTFDTKLSWLPHLKDLKRRCLKALSI
FT                 LKCISHTSWGADRTCLLRFYRAFVRSRLDYGCTIYGSARPSYLKMLDAVHH
FT                 TGIRLATGAFRTSPIPSLCAEAAEPPLNIRRRLLMVCQAYKTLSTPFTPAY
FT                 HTGCRAAAKYQATAAHGVPGVQNAVHTFHTCIPHLADPPLERLFHNRHRAT
FT                 RPFGIRTKDCLLEMGMADLSVLRRGWGRFPPWLLRKPRLVLDLTTFKKGET
FT                 SDFTFRSVFFNILDMHHTYTVVYTDGSKQDNTVGCSVVFPDRVIRIRLPEN
FT                 YSVFSAELYAILKALEQIRSDRRKRFLLCSDSLSALQALRQLYPVVTLLQD
FT                 IQDALTLLQRRGKEIIFCWVPGHVGIPGNEEADRAAKEACRDSVVARCPIP
FT                 LQDATSLLRLRSLQLWEEEWLSVTDNKLRLLKPTTRLWRSSCQPLRRDEVA
FT                 ITRLRIGHCPFTHGFLLR"
XX
SQ   Sequence 5716 BP; 1381 A; 1437 C; 1406 G; 1491 T; 1 other;
     ccagtcctct aggcccactc tgggcacgct tcagcgacca ccgtgtggcg cggcggtgga        60
     atgttgtgtg taccagggaa tggggatctt ggcttgaccg cccgggtcgc gaggatggta       120
     caaacctcta taaaaaaaaa ccttcaatcc caaggtgtgc tacgtgctga tgggatgcat       180
     ggctgttgaa gtggaacagt cgctagcgag caacctctgg ggatactgcc gcacctcagt       240
     tgtataaggc ttacctaggc atgcggggct ctgtctaggt ggacatttag ttccctagct       300
     gctcgtggga ccgagatgga tcctttgaga aattttaaac ctcctagtgg gatgggtgta       360
     ccactggggg gtaacaacac ccaacccaat aagagggctc gggtagccag tcctcctgat       420
     ttaggacctc attcaaaacg aggtgggaat agttacggaa cacaaaatgt gtttttgatt       480
     atcaaaagga aagagggtac gtttgaaaaa gtgtcacctt tttacattca gaagggtctg       540
     gaaggtattg ctggcgactt aaaatctgtt aagcacttgc gcaatggtac attgttggtg       600
     gaaaccaata attcacaaca agcagcaaac ctgcagaaag ccgcatgcct cggcgaattt       660
     cctatcgagg cagagttaca tggcacgctg aacaacagca aaggtgtagt tacgtgcagg       720
     gacttggtgg aaatgacaac cgaagaacta aaaggtgagt gggcaaagga cagcattgta       780
     gatgttcaaa acataatgaa aagggtgggt ggggagttaa tgaaatcaga ctccttcatc       840
     ctcaccttca atagccctaa actcccgagt acgtcaaggc aggtttccta cggttgaaag       900
     tccggcccta tgtcccaaac ccgatgcgct gctttaagtg tcagcgcttt gggcatacca       960
     ccattggttg caagggcgaa gccacttgtg gacaatgtgg taaggcagca catgatggag      1020
     tagattgttc accacctcca aagtgtgtga actgctctgg tgaacatcca gtttggagca      1080
     gggactgcag tgtgtacttg gaggaaaaga aagtgcagga gattaagaca acaaagcgca      1140
     tttcctatgg tgaggccaag aagatcttta aggccatgca gcctccttcc tttgtaacat      1200
     cttttgctgc agttgttcag aagtcagttt ccaaggccga tgttgctacg caaaccgagg      1260
     tcgctagtgt cggtacgaac acctgtacct gccagtgcac ttgcaaggct gcagctgtta      1320
     ctgtgtctga agactcaaaa tgttcatctg acaaagctac tgtcgtcact gttgaagagc      1380
     tttcaggcac cctcttcagt agagggcgct gcgccgagct taccaccttc caagccagtg      1440
     gctattcaaa aggccagcac agccccttct actggtgctg tctccactgt aaaggctgcc      1500
     aagccgaaaa agacaccagc aaaaagtcag gctcaggtta aggcaggtaa taaaccctca      1560
     gactacatag aggtcattat acctgacctc ccctctgaat ctgctccaga gcttatggaa      1620
     ctggatatcc ctcaggggca aacttctcgc cccagtactg accctccacc tagttcagta      1680
     tccccgcctc ggcggaaaga gaaggtgaaa atacaacccc cgtaatagat ggctcccata      1740
     cttcaatgga acctacaggg tttcaggacc catgtggagg aacttcgcat attaactcag      1800
     ggcaggccac tgtgtatatg tctacaagag acgaatttta agccctcatc caaccctgag      1860
     atacgtggct atgacgtata tagaaaggac gaccttagtg gtgagagagc taaaggcgga      1920
     gtggctgttt tcgtagacac agcctgccac tcgtccttac tccccattca aaccccctta      1980
     caagcagttg cagtgtgtgt tcagatgcgt catcgattga ctgtctgtgc catttatctg      2040
     cccccacatg acgcatttga tgaggaagcc cttcatgacc ttatcacgca gctcccccac      2100
     cctttcatcc tttgtggtga ttttaatgca cataatgtgc tttgggggtc tgaaactacc      2160
     tgccccaggg gtcgagcaat tgagaggctt cttctgacgt cctctgtcca tttacttaac      2220
     accggacagc ccacacactt ctgtactgca tcagggtcgt tctctgctat agacctcacg      2280
     ctttgctctc cagcccttgc ccctacgatt caatgggaag tggacgctga ccttcacgga      2340
     agtgatcact tcccaatatg gatcaaccag ccagatggam tggagcccgt tagacgaccg      2400
     ccacgatggg tgcttagtag agcggactgg accctttacg gcagactggc tgaactcgat      2460
     tgtcatgcta acgtccagga atgggtggac catgtcaccc aaacgatcca ccacgccgct      2520
     gctgcttcta ttccgcagtc ttcaggtcag ccgagaaggc accccgtccc atggtggagt      2580
     gacgactgcc gccttgcaat acggcgcggc gagcagctct gcgtaggttc aaaagccggc      2640
     caactgcaga gaacctcgca gcctttcggg tggcgagggc aaggtgtcga caaacgattc      2700
     gtgagagcaa gaaacgttca tggcagcagt tcctcaatac cattactcgt tccaccaaaa      2760
     gttcacaggt atgggagacc atcaggagaa tatccgggag aggaggaagg cgtccaattg      2820
     ctgctgtaat gggaaatggc accctacaga cgaacccacg agtgattgcg cagactatgg      2880
     cggaacattt cgccgcagtc acttctactg ccagtcagaa tccagctttc agacgccaca      2940
     gactgtctgt ggagaggggt agtttggatt ttaagtccac cattgatgaa gaatacaatt      3000
     gccccttttc catgtgggaa ctcaattctg cactcctttc aactcgtgac acatgccctg      3060
     gttatgacag gatccattac agcatgctac agcaccttac cgaccgaaat aaagaaattc      3120
     tcctcgccct ttttaatgaa atttggcagt cgggccactt ccccgactcc tggcgtgaag      3180
     cgcttatgat tcctctttta aagcctggaa aggactctac atgcccgagt agctatcgta      3240
     gtgttgccct cactagctgt gtgggaaaga ccttggagcg gatggtcaac cgccgcctcg      3300
     tctggatgtt agaatccagg cagctcctta gtcgcttcca gtgtggtttc aggagatatc      3360
     gttccacctt cgataacctg gccttactgg aggcggcgat acaacaggct ttcctacaaa      3420
     ggcatcacct tttggctata ttttttgaca ttgagaaggc ctacgacact acctggcggc      3480
     atcttattct cagacagctc cacgattggg gtttccgtgg atgtcttccc acttttatca      3540
     agtcctttct ttctccacgc tattttagat acagaatcgg tgacaccctt tctgatcgtt      3600
     ttgaacagga gaacggagtc cctcagggca gcgttttaag tgtgactttg tttgccatag      3660
     ctattaacag tattacgtcc gttgttaaat gtcctgttaa gtgttcctta tttgttgatg      3720
     acttctctct cttttgctct tcatccaacc tagcaacgac aacacgtcag ttgcagctca      3780
     ccttcgccgt ttggatgaat gggcagaaaa gactggcttt aagttttcaa ccgagaagtc      3840
     tgtctgtgtt ctttttaacc gtactcgttc catttttaat ttgcctgaac tgcgactgag      3900
     ggacgccgtt ttacatttta aagatacagt gaggtttctg ggcctcacat ttgacacgaa      3960
     actttcatgg ctgccacacc tgaaagattt gaaaagacgg tgcctcaaag cgctaagcat      4020
     tttaaaatgt attagccata cgtcatgggg agcagacagg acttgcctgc tccgatttta      4080
     tagagccttt gtgcgatcgc ggcttgatta tggatgcacg atttatgggt ctgcacggcc      4140
     atcctatttg aagatgctgg acgcggttca ccatacaggg attcggctgg ccactggggc      4200
     attcagaaca agccccatac caagtctctg tgctgaggct gccgagccgc cgctaaatat      4260
     caggcgacgg ctgctcatgg tgtgccaggc gtacaaaacg ctgtccacac ctttcacacc      4320
     tgcataccac acctagctga tcctccgttg gaaaggcttt ttcataatcg gcaccgggct      4380
     acaaggcctt ttgggatccg cacaaaggat tgccttttag agatgggaat ggcagatctt      4440
     agtgttttac gtcgaggttg gggaaggttt ccaccttggc ttctccggaa gccccgtctt      4500
     gttttagatc tcacgacttt taagaaaggt gaaacttcag attttacctt tcggtcagtg      4560
     ttttttaata ttttagacat gcatcacact tatacagtag tgtacactga cggttcgaaa      4620
     caggataata ccgtcggctg ctccgtcgta ttccccgacc gtgtcatccg gattcggctt      4680
     cctgagaatt attctgtttt ctcagcagag ctttatgcga ttctgaaagc actggagcag      4740
     atcagaagtg atcggcgtaa acggtttctt ctctgttctg actctcttag tgcgctgcaa      4800
     gccttacgtc agctctatcc agttgtgacg ttattgcaag atatacagga cgcactgacc      4860
     cttctccaac gtcgggggaa agagatcata ttttgttggg tgccgggaca tgttggaatt      4920
     ccgggaaacg aggaagccga tcgggccgcc aaagaggcct gtcgagacag cgtagtggca      4980
     cggtgcccta ttcctctgca agatgccact tccttgttgc ggctgcggtc tctgcagttg      5040
     tgggaggagg aatggctgtc agtaacggat aacaagctgc ggttgctgaa gcccactacc      5100
     cgtctgtggc gatcctcctg ccagcccctc aggagggatg aggtcgccat tacccgcctg      5160
     cgaatcgggc actgtccgtt tacccacgga ttcctcctac gatgagagga gcccccgatg      5220
     tgtgatgcct gtggcgtaca gataaccgtc cgccacatct taatagagtg taccttatac      5280
     cgggcacaga gaacagaggc agatcttggt gcagatttgc cacatatttt aggcgatgac      5340
     gaggcgagtg tgttcaaact tttacacttt tgtgaaattt ctggactctg gcctaagctt      5400
     ttaggctgga ggttttagtg tattgtagat tggtaggttg atatcttttc ttcctgcagg      5460
     cagtcagctt tcatcctgtc attttaacta cttcatccac gttctacttt ttagacaaag      5520
     tacgatggtg gctcttgagt tacctacctt gattcatgct gcacccaggt tttatctcca      5580
     gttgttgaat tctgcatttt atattgtgtt tccctcatct tgaaaagaac attcctgaca      5640
     ctcgcctcaa ctacattatg cccgggcgct gaaaacctcg ttgttgagcg ccctccattc      5700
     atcttcatca tcatca                                                      5716
//
ID   Nimb-36_LMi repbase;    DNA;    INV; 5896 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5896
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 214-214 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(611..1108,1077..2033,2037..5759)
FT                 /product="Nimb-36_LMi_1p"
FT                 /translation="MGDNFAMTSSSSSSTLPFTQKRKLDESKSKKVLPNLP
FT                 KFLVVSRTDGHDFSSVNPFVIQRGVDAIAGPVKTCSRQRNGTLLLETEGAF
FT                 QVQKLLRTTLLHTFPVKVEPHRTLNSSRGVVFSRSLDGLSDEELQEYLSDQ
FT                 GVTAVHRVMKRVNNNLTPTQTNCVLDLHRPKQTVFLTFDKVDLPSKIKAGY
FT                 EIISVRPYVPNPTRCYQCQRFNHTRQSCPNAAKCVTCGRDAHEGDCPPPSP
FT                 RCINCMGDHAANSRECPVYKDERAIQEIRVKEKVSTSAARKLLASRKPAVL
FT                 PAGTYSNVLSSPRPTKETGTQTCDFTFSDTVVRSASPKIARSTSPMPSAHS
FT                 KSQSTSVSQKSRATKSEARTSKKDPVREDFLKTSSSQPSAAHSSNRTASKK
FT                 AHKKRSSSPSPPRRDSSVTPSSSRRPRPSSVSPGRSTACRSAGISPAEEAA
FT                 PSDQSRKEAEQMSEPMEHDCPSVDCSSSAASQPGPQRPSRSPLAFSLFFFS
FT                 AFFMALLQWNIRGIRSNRDELRLLLRLHCPLIVGLQETKLRPTDHINFPQY
FT                 TAVRFDLPPVEGIPAHGGAMLLIREDVYYHPIPLQTPLQAVAVRVTISTFT
FT                 FSLCNIYTPSSSAVLRADLLHLVAQLPTPFLLIGDFNAHHPLWGSPASCQR
FT                 GSLLADLFNHLNLVCLNTGEPTFLSDTTHTYSHLDLAICTTPLAHRFEWYV
FT                 LSDRYSSDHFPCIISLLHHTTSPCSTSWNISKADWGLYSSMAVFHDQNFPS
FT                 CDSQVNYLTDVILTAAEHSIPRTSTSPHRVPVPWWNAACSDAIRARRRALR
FT                 LFQRRPTLENCINYKRLRAKCRRVIKESKKACWTAFTSSFNRSTPSSVVWG
FT                 NLRRLSGTKVHSPIPGLNIANQVLVEPVDICNALGRSFAEVSSSANYDPAF
FT                 LPRKQAEEARTPSFTSPNRESYNATFTMQELERALALSRSSAPGPDAIHIQ
FT                 MLKNLSPAGKCFLLRTYNRVWTEGEVPTRWREAIVVPIPKPGKDKHLPSSY
FT                 RPISLTSCVCKVMERMVNARLVWILESRHLLTNVQCGFRRHRSSIDHLVTL
FT                 STFVMNNFLRKRQTVAVFFDLEKAYDTCWRAGILRTMHTWGLRGRLPLFIC
FT                 AFLKDRMFRVRVGSVLSDTFRQENGVPQGSVLSVALFAIAINPIMDCLPAD
FT                 VSGSLFVDDFTIYCSAQRTCLLERRLQHCLDSLYSWSVANGFRFSHEKTVC
FT                 INFWRYREFLPPSLHLGPVALPFVETTTFLGLTLDRKLSWSPHVSSLAARC
FT                 TRSLNVLRVLSGTSWGADRTVLLHLYWSTVRSKLDYGSFVYSSARPSILRR
FT                 LNSIHHRGLRLAIGAFYTSPVDSLYAEAAELPLTYRRDILLCRYACRLLSM
FT                 PHHPSYPSFFNDSLDSHYGLSAIALLPPGVRFRRLLRQLDFTLPSTFQIGE
FT                 SPVPPWLQAQVRVHLELTSLPKESTSDAVYRSRFLELRAWLENSVFIYTDG
FT                 SKTNEGVGCAFVIGDDGFQYRLNDHCSNFTAELFALYQAVLYIRRHRSPSY
FT                 VICSDSLSAIQSLRDPFSAHPVVHRINRSLQLLAADGPRVHLLWVPGHAGV
FT                 PGNEAADAAAKAATLLPRTATYCVPSNDIRGALSRRLISSWHNVWSSLTNN
FT                 KLRTIKPLPVAWRTTSRRSRREEVILARLRIGHCRFSHRHLLTGDPAPLCS
FT                 CGHPLTVRHVLLSCPNFTPVRIALNLPDTLEEILADDARAAARVLNFINLT
FT                 NLSKDI"
XX
SQ   Sequence 5896 BP; 1208 A; 1772 C; 1308 G; 1608 T; 0 other;
     ggggcccaca gctcttttgt gggtacgtgt gtggcgcacg gggccccgag ccgaagcagc        60
     cttccttccc gccccaggct gcttcagtcc ccccccccgg tttatgcctt cgcccggaga       120
     cgggtgtccc gtgtgagttt aggtggtctc atgtaccagc ttttttcttt tctcggtttc       180
     tcttctccta acctttgctt ccgcctttcc ctccttactg tactcttcta gccttcctct       240
     cctcctttag tctccgcctc ggcgtttgag actcaacctt tcccacttcc ttcttctttc       300
     cttctttcct ctttcttcct ccctgtgcgt tcctgaaggc cgcccacgca ctcgctgcgt       360
     aacaggtgac tgggtaatgc gtaagtccca gccccgggtt ggcatgtagg gcccgcacgt       420
     accccctggt aaaggccagg cccagggagg ggtgattacc cgagctgata ccttccgacc       480
     gtgccgattg gtccctccgt ccgtttctcg ggaggtgtga cctgaggtgt ggacaatcac       540
     ctaaggcggg tgagccctca gtgagggttc cccattagga aggagcgcgc catcggagac       600
     gccggtaatc atgggggaca acttcgcaat gacttcttct tcctcttctt ctactttgcc       660
     ctttacccag aaaaggaaac tcgatgaatc aaagtccaag aaggttttgc ctaacttgcc       720
     aaagttcctt gtcgtttcac gaactgatgg ccatgatttc tcgtcagtga atccttttgt       780
     aatacaacgg ggtgtcgatg cgattgcagg tcctgtcaaa acttgttccc gccaacgtaa       840
     tgggacactg ttgctggaaa ccgaaggtgc cttccaagtt cagaagttgc ttcgcactac       900
     actgttgcac acctttcctg ttaaggtcga acctcatcgt accctaaact cgtcgcgggg       960
     ggtagtgttc tcacgatccc ttgatggcct gtccgatgag gaactacagg agtacctttc      1020
     cgaccagggt gtaacagctg tacatcgtgt gatgaaaaga gttaacaaca acctaacacc      1080
     gacccaaaca aactgtgttc ttgacctttg acaaagttga ccttccttcc aagataaaag      1140
     caggctatga aatcatctcc gttcggccgt atgttcctaa tcccacccga tgttaccagt      1200
     gtcagcggtt caatcatacc cgtcagtcgt gccccaatgc agcgaaatgc gtcacctgtg      1260
     gtagggacgc ccatgagggt gactgcccac ctccgtcccc tcgctgcatc aactgcatgg      1320
     gtgaccatgc tgctaattct cgcgaatgcc ctgtatataa agatgagcgg gccatccagg      1380
     aaatcagagt caaggaaaaa gtttccacct ctgctgcccg gaaattacta gcaagtagaa      1440
     agcctgctgt gctcccagcg ggtacctaca gcaatgtcct ttcctctcct cgaccaacaa      1500
     aggagacggg tacgcagacg tgtgacttta ccttcagtga cacagttgtc agatcagcca      1560
     gcccaaagat tgcccgctcg acatccccaa tgccttctgc tcactctaaa tcccagtcca      1620
     catcagtttc acagaaatca cgggccacta agtcggaagc ccgtacttcg aaaaaagatc      1680
     ctgttcgcga agattttcta aaaacgtcat cttcccaacc atcagccgct cattcttcaa      1740
     acagaactgc ctccaaaaag gcacacaaaa agagaagttc ctctccttcc ccgccacggc      1800
     gtgactcttc ggtcacgcca tccagcagta gacggccccg gccatcctct gtctcgccag      1860
     gacgctctac tgcttgccga tctgccggca tttcaccggc ggaggaagct gccccttccg      1920
     atcaatccag gaaggaggca gaacagatgt ctgaacccat ggagcacgat tgtccatctg      1980
     tcgattgcag tagcagtgcc gcctcgcagc caggccctca gcggccgtcg aggtgatccc      2040
     ctcttgcctt ctcccttttt ttcttctctg ctttcttcat ggcactcctt cagtggaaca      2100
     tcagaggcat tcgctccaac cgcgatgaat taagactact ccttcgactg cactgcccgc      2160
     ttatagtcgg tctgcaagaa acgaagctcc gtccaaccga tcatatcaat ttcccacaat      2220
     acactgcagt gcgttttgat ttacctcctg tggaaggtat tcctgcccat ggaggtgcta      2280
     tgctgctcat tcgggaagac gtctattatc atcccatccc actgcaaact cccctacagg      2340
     cggttgccgt ccgtgtcacc atctccacat tcaccttctc tctttgtaat atctacaccc      2400
     cgtcgtcgtc tgccgttctt agggcagact tactgcacct tgttgctcag cttcctacgc      2460
     cgtttttgtt gattggcgac ttcaacgccc accaccctct atggggctct ccagcttctt      2520
     gccagagggg ctctcttttg gctgacctct tcaaccacct taaccttgtc tgcctaaata      2580
     ccggcgaacc aactttccta tccgacacga cgcataccta ttcccatttg gacctcgcaa      2640
     tatgcactac tccacttgcg catcgtttcg aatggtatgt tctgtctgat aggtactcga      2700
     gcgaccattt cccctgtata atttctctac tacatcatac cacttctcca tgttccacta      2760
     gctggaacat ctccaaagcc gactgggggc tctattcttc catggcggtt ttccatgatc      2820
     agaacttccc cagctgtgac agtcaggtca actacctcac ggacgtcatc ctcaccgctg      2880
     ccgaacattc cataccccga acttcaacat ctccacatag ggtcccagtt ccctggtgga      2940
     atgcagcatg tagcgatgct attcgagccc ggcgacgtgc tctacgtctg tttcaacgcc      3000
     ggcctacttt ggaaaattgt attaattaca aaagactacg agcgaaatgc cgtcgtgtca      3060
     ttaaagaaag caaaaaagct tgctggactg ctttcacgag ttctttcaac agatctactc      3120
     cttcgtcggt cgtctggggt aacctacgcc ggttatctgg cactaaggtc cattccccaa      3180
     tccccggcct gaacatagca aaccaagttc ttgtggaacc tgttgatatc tgcaatgctt      3240
     tgggccgctc tttcgctgag gtctcaagct cagctaatta tgaccctgcc ttcctccccc      3300
     gaaaacaggc cgaggaggca cgaacgcctt cttttacatc tcccaatcgt gaaagttaca      3360
     atgccacctt caccatgcag gagctagaac gtgcccttgc cctctcccgg tcctctgccc      3420
     cggggcccga tgccattcat attcagatgc tgaagaacct ctcccctgca ggtaaatgct      3480
     ttcttcttcg cacttataat cgcgtctgga ctgaaggtga agttcccact cgttggcgtg      3540
     aagcaattgt tgtccccata cccaaaccag gaaaggacaa acatcttcct tccagttatc      3600
     gccccatttc cctgaccagc tgtgtctgta aggtaatgga gcgcatggtc aatgctcggc      3660
     tggtttggat actcgaatct cgacatctcc tcactaatgt ccaatgtggg tttcgaaggc      3720
     atcgctcttc tattgatcac ctcgttacct tgtcgacctt cgttatgaat aactttttgc      3780
     ggaagcgtca gacggtggct gttttcttcg atttggagaa ggcttacgac acttgttggc      3840
     gggcgggcat tctccgcacc atgcatacat ggggtcttcg cggccgtctc cccctcttta      3900
     tttgtgcctt tttaaaagat cgaatgttca gggtacgagt gggctctgtt ttgtcggaca      3960
     cctttcgcca ggagaatggg gtgccacagg gctccgtttt gagcgtggca cttttcgcca      4020
     ttgcgatcaa cccaattatg gattgcctcc cagctgatgt ttcaggctcc ctgtttgtgg      4080
     acgacttcac gatctattgc agcgctcaga gaacgtgtct cctggagcgt cgtcttcagc      4140
     attgccttga cagtctctat tcctggagtg tcgcaaacgg cttccgtttc tcccatgaga      4200
     aaacggtctg tatcaacttc tggaggtaca gagagttcct tccaccatct ctccatctcg      4260
     gccccgtcgc tctccccttc gtggagacga cgacattttt agggctaacg ttggatagga      4320
     aactcagctg gtctccacat gtgtcttctc tggctgcccg ctgtactcgt tccctcaacg      4380
     ttctccgtgt tcttagtggt acatcatggg gggcggatcg taccgtcctg cttcacctct      4440
     attggtctac tgtcagatcc aagctggatt acgggagttt tgtgtactct tctgcacggc      4500
     cgtccatttt acgccgccta aactcgattc accatcgggg gttacgcctg gcgataggag      4560
     ccttttacac tagccctgtt gacagcctct atgccgaagc tgccgaatta cctttaacct      4620
     atcgacgcga catattgctg tgtcggtacg catgccgtct gctttcgatg ccccaccacc      4680
     cttcctatcc atcattcttt aatgactccc tcgatagcca ttacgggctg tccgcgattg      4740
     ccctgctccc tcctggagtc cgctttcgtc gcttgcttcg gcagctcgat tttaccctcc      4800
     cttccacatt tcaaataggt gagagcccag tgccaccttg gcttcaggct caagttcgcg      4860
     ttcacctcga actcacctca ctcccgaagg agagtacttc ggatgctgtt taccgctcga      4920
     ggtttcttga acttcgtgca tggctcgaaa attccgtctt catatatacg gatggctcta      4980
     agaccaatga aggtgtcgga tgtgcgtttg tcatcgggga tgacggtttt cagtacaggc      5040
     ttaatgacca ctgctcgaat ttcacagctg agctttttgc cctctatcag gctgtactat      5100
     acatccgccg acaccgttct ccttcctatg tcatctgctc tgactccctc agcgccatcc      5160
     agagtctgag agaccccttt tcggcccatc ctgttgtgca ccgaatcaac cgctcccttc      5220
     aattattagc tgccgacggc cctcgcgttc acctcctgtg ggtacctggc cacgcaggcg      5280
     tgcctggtaa cgaggctgct gatgccgcgg ccaaggctgc aactctccta cctcggacag      5340
     ctacgtactg tgtcccatcg aatgatattc gaggggctct ttcccgtcgc cttatatcgt      5400
     cgtggcataa tgtgtggtcc tcgcttacaa ataataagct tcgaaccatt aaaccgctcc      5460
     cggtggcttg gaggaccacc tcacgccgct cgcgacgaga agaggtcatc ttggcccggt      5520
     tgcggatcgg acattgccgg ttcagccacc gccacttgct aactggtgac cccgcaccgt      5580
     tgtgttcctg tggtcacccg ctgacggtgc gccatgtttt attgtcttgt ccaaatttta      5640
     ctcctgttcg gattgcactg aatctaccgg atacactgga agaaatttta gctgatgacg      5700
     caagagctgc tgctcgagtc ttgaatttta tcaacttgac caatttgtca aaggacattt      5760
     agctcttcct tttgttgtat tttaccctat gtttttagct gttttcatat aggcttatta      5820
     tccttcggta tatctcagtt ttgattcggg cgctaatgac ctcagcagtt gtgcgcccta      5880
     aaaccacaaa aaaaaa                                                      5896
//
ID   Nimb-37_LMi repbase;    DNA;    INV; 5765 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5765
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 215-215 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(889..990,951..1589,1487..1810,1797..2105,
FT                 2045..5311)
FT                 /product="Nimb-37_LMi_1p"
FT                 /translation="MKKRVDGELVKSDSFILTFNSPRLRTMLRQASCVSQT
FT                 PDHVKAGFLRLNVRPYVPNPMRCFKCQRFGHTTLGCKGRLPVANVVRQPMM
FT                 GLTVLHLRXVSTVQGTTQSGVGIVQCTXRRRKYRKLRPQGVSPMQRPKRSS
FT                 RPCNLLYFPPPSLQYCKNQLLKLMPPPRLRLLVWAPTPALASARVRQQKLQ
FT                 LRSPTDNADKATGTAFAEPWFHNCRACHHVTATATTPPTPPPHHSCNHNLC
FT                 LHHQATLQSLPSRHRHRHNPTNATTSPQLQPQPLSPPPSHLNPRRLPANTV
FT                 TGKTVIXLSDFVEVIPPEPSSDPAPELMELDLPQGQXSRPNTEPPPRSVSP
FT                 SRKKERVKIQPPRSNLRDRWPQYCSGTCRVSGRMWRNSVILTQGRPICICL
FT                 QETNFKSTDNPELRGYVLHKKDDLSGERARGGVAIFTNTAYHSEPLSLTTH
FT                 LQAVAVSVMCVTVAPLSHHTFTSRCSICYVRHRLTVCSLYLPPHDTFDVAA
FT                 LEDLLTQLPQPFILCGDFNAHNVLWGSASTCPRGRATERLLLSSSAHLLNT
FT                 GQPTHFCTATGSFSAIDLSLCSPALAHTTQWEVVDDLHGSDHFPIWLHLPD
FT                 RVEPECRPPQWVISKADWTLFSQLAELETRDNVQEWVDCITQTIHSAAEAS
FT                 MPLSLGQPKRQPVPWWTAECRSAIRARRAALRRFKSRPTADNLAAFRMARA
FT                 KCRQIIRESRKRSWQQFLSTVTRSTKSSTVWETIRRISGKGGRCPVAAVMG
FT                 NGVLHTSPRDIAQTMAIYFANVTATAHQDPAFQRHRVVAERGNLDFRSTGH
FT                 QDYNCPFTLWELDSALSVARDTSPGNDRIHYSMLRHLTQRNKEILLNLFNA
FT                 IRPGHFPDSWREAILIPLLKPGKDRTCPSSYRSVALTSCVGKTLERMVNRR
FT                 LVWMLESRQLLSRFQCGFRRYRSTFDNLASLEAAIQQAFLRRHHLLGVFFD
FT                 IEKAYDTTWRHLILRQLHEWGFRGCLPIFIRSFLSPRYFRYRVGGVLSDRF
FT                 EQENGVPQGSVLSVTLFAIAINSITSVVKSPVQCSLFVDDFSVFCSSSSLA
FT                 TTTRQLQLTLRRLDEWAQKTGFKFSTEKSVCVLFNRSRSIFNLPELRMRDT
FT                 VLNFKDTVRFLGLTFDCKLTWLPHLKDLKRRCLKALSILKCLSHTSWGADR
FT                 TRLLQFYRAFVRSRLDYGCTVYGSARPSYLKMLDVVHHEGIRLATGAFRTS
FT                 PIPSLCAEAAEPPLSIRRQLLMVRQAYAALSTPYTPAYNTVARPPMERLFR
FT                 NRLRATRPFGIRAKDCFLDMGVSDFTVLRRGWSRYPPWLLQRPSLLLDLTS
FT                 FKKDCTPDITFQSEFFNILNKHRDCTVVYTDGSKQGDSVGCSAVFPGHIVG
FT                 IRLPAAYSVFSAELHAILQALEHIRRARGTKFLLCSDSLSALQSLLVMYPA
FT                 ETITQLIHDQLYLLQRRGKEVSFLWVPGHVGIWGNEAADVAAKAACSDPNV
FT                 TECAIPLRDVYSVLRQRSLQLWEETWLAVTGNKLRLVKPTVRPWRTSCQPF
FT                 RRFEVTLTRLRIGHSPLTHSFFIPSGGSTDL"
XX
SQ   Sequence 5765 BP; 1353 A; 1497 C; 1425 G; 1478 T; 12 other;
     ccctcagggg ctcagcatta atttgctgag tacgggcttg gcgaacccgg ggtcctgagc        60
     tggggactgg taagcgccgc cagtcctcta gacaccgtaa cctctgggca cgcttcagcg       120
     accaccgtgt ggcgcggcgg tggaacgttg tgtgtaccgg ggaatgggga tcttggcttg       180
     accgcccggg tcgcgaggat ggtacaaacc tctataaaaa acccttcaat cccaaggtgt       240
     gctacgtgct gatgggatgc atggctgttg aaggggaaca gtcgctagcg agcaacctct       300
     ggggatactg ccgcacctca gttgtataag gcttacctag gcatgcgggg ctctgtctag       360
     gtggacactt acttccctag ctactcgtgg gaccgagatg gaaaaattct aatttaccca       420
     tgaacctcct agtgggatgg gtgtaccact ggggggtacc aacacccaac caamcaagag       480
     ggctmgggta gccagtcctc cggattcagg ttctcaaaaa aaagtttagt ttatagtaac       540
     agaacacatg ctgctmmaca gaatgtgttt attgtcgtga agagaaaaga gggctcgttt       600
     gagaaggtgt cgcccttcta tatccagaaa ggtctcgagg gaattgctgg tgmtttgaaa       660
     tcagtaaaac ggttgcgtaa tggsacattg ttggtggaaa catcaacttc ccaacaggcg       720
     gccaacctac agacggctaa gtgccttggg gaatatcaaa tcgagacgga gctgcacaac       780
     acccttaact atagcaaagg cgttgtcacc tgtagggatc tggtggacat tccagcggat       840
     gaactgaagg atgagtgggc ttcagaaggc attgttgatg tgcaaaacat gaagaaaagg       900
     gtggatggag agctcgtcaa atctgactcc ttcatcctca ccttcaatag tcccagactc       960
     cggaccatgt taaggcaggc ttcctgcgtt tgaatgtaag accctatgtc ccaaacccaa      1020
     tgcgctgttt taagtgccag cgctttgggc acaccactct gggttgtaag gggaggctac      1080
     ctgtggcaaa tgtggtaagg cagcccatga tgggattgac tgtactccac ctgcgamatg      1140
     tgtcaactgt tcaggggacc acccagtctg gagtagggat tgtgcagtgt accttsagga      1200
     gaagaaaata caggaaatta agaccacaag gcgtatctcc tatgcagagg ccaaaaagat      1260
     cttcaaggcc atgcaacctc ctgtatttcc cacctccttc gcttcagtac tgcaaaaacc      1320
     agttgctaaa gctgatgcct ccacccagac tgaggttgtt agtgtgggca ccaacacctg      1380
     cacttgccag tgcacgtgtc aggcagcaga agcttcaact ccgcagcccc accgacaacg      1440
     ctgacaaagc tacgggtacc gcctttgcag aaccctggtt ccataactgc agagcctgcc      1500
     atcacgtcac cgccaccgcc acaaccccac caacgccacc acctcaccac agttgcaacc      1560
     acaacctctg tctccaccac caagccacct aaacccaaga aggttaccag caaacacagt      1620
     cacaggcaaa acagtcatta asctttcaga cttcgttgaa gttattccac ctgagccttc      1680
     gtctgatcca gctccagaac tcatggagct ggatctccct caggggcaam catctcgccc      1740
     caatactgaa cctccaccac gttcagtgtc tccatctcgg aagaaagaga gggtaaagat      1800
     ccaacctccg tgatagatgg ccccagtact gcagtggaac ttgcagggtt tcaggacgca      1860
     tgtggaggaa ctccgttata ctgactcagg gtagaccaat ctgtatatgc ctgcaagaga      1920
     caaattttaa atccactgac aaccctgagc tacgtggcta tgttctccac aagaaggacg      1980
     acctcagcgg agagagagcg agaggcggag tggctatttt tactaataca gcctatcact      2040
     ctgagcccct ctctctcacc acacatttac aagccgttgc agtatctgtt atgtgcgtca      2100
     ccgtttgaca gtgtgctccc tgtatctgcc acctcatgac acgtttgatg tagcggccct      2160
     cgaagacctt cttacgcagc tcccccaacc attcatcctc tgtggtgatt ttaatgcaca      2220
     caatgtgctt tggggctctg ccagtacctg ccccaggggt cgagcaaccg agaggcttct      2280
     cttgtcatcg agcgcacatt tattaaacac gggacagccc acacactttt gtactgcaac      2340
     ggggtcgttc tcagccatag atctctcact ttgctctcca gccctcgccc acactacaca      2400
     gtgggaagtg gtcgatgacc tgcatggcag tgaccatttc cccatctggc ttcacctgcc      2460
     agacagagta gagcccgaat gcagaccacc tcaatgggtg atcagtaaag ccgactggac      2520
     actgttcagc caactcgctg agctggaaac tcgtgacaat gtccaggaat gggtggactg      2580
     tatcactcaa acgatacaca gtgctgctga agcatctatg ccgctgtcgt taggacaacc      2640
     aaaacggcag cctgtccctt ggtggactgc tgagtgtcgc tcggcaatta gggccaggcg      2700
     tgcagctctg cgtaggttta agagccggcc aactgcagac aacctcgcgg cctttcggat      2760
     ggcgagggca aaatgtcgcc aaataataag agagagccga aagagatctt ggcaacagtt      2820
     cctgagtacc gttacccgct ccactaaaag ttccacagta tgggagacca tacggaggat      2880
     ttctgggaaa ggggggaggt gtccagtggc tgctgtaatg gggaatggcg ttctccacac      2940
     cagcccgcga gacattgccc agaccatggc tatctatttt gccaatgtta cagccactgc      3000
     ccatcaggat ccagcattcc agcgccacag agtggttgct gagaggggca atttggactt      3060
     caggtccact ggtcatcagg attataactg ccctttcaca ctgtgggagc tggattctgc      3120
     attgtctgtg gcgcgtgaca catcccctgg caatgataga atccactaca gtatgctgcg      3180
     gcacctaaca cagcgaaata aagaaatcct cctcaatctt tttaatgcca ttcgtccagg      3240
     tcactttcct gactcgtgga gagaagcaat tttaatcccc cttttaaaac ccgggaaaga      3300
     tcgcacatgc ccaagcagct atcgtagtgt tgccctcact agttgcgtkg gaaagacctt      3360
     agagcggatg gtcaaccgcc gccttgtctg gatgttggaa tccaggcagc tccttagtcg      3420
     cttccagtgt gggttcagga gatatcgttc caccttcgat aacctggcct ctctggaggc      3480
     ggctatacaa caggctttcc tgcgccgtca ccaccttctg ggtgtatttt ttgatatcga      3540
     gaaggcctac gatactactt ggaggcatct tatacttagg cagcttcacg aatggggatt      3600
     tcgtggttgt cttcccattt ttattcggtc tttcctttct ccacgttatt ttaggtatcg      3660
     agttggtggc gtgctctctg accgctttga gcaggaaaac ggtgtccctc agggtagtgt      3720
     tttaagtgtg acgttgtttg ctatagctat taacagtatt acttctgttg tgaaaagtcc      3780
     tgtccagtgt tcactatttg ttgatgactt ctctgtcttc tgttcttcct ccagccttgc      3840
     aacgacaact cgtcagttgc agctcactct ccgacggctg gacgaatggg cacagaagac      3900
     cggttttaaa ttttcaaccg agaagtctgt gtgtgttctt tttaaccgtt cacgttctat      3960
     ttttaactta cccgaactgc ggatgaggga cactgttctg aattttaaag acactgtacg      4020
     ttttctgggt ctcacatttg actgcaaact tacttggttg ccgcatctta aagacttgaa      4080
     gagacggtgc ctcaaagcac tcagtatttt aaagtgtctt agtcacactt catggggagc      4140
     tgacaggact cgtctgctcc agttttatag agcctttgta cgatcccgac ttgattacgg      4200
     ctgcacggtg tatgggtctg caagaccttc ctacctaaaa atgttggacg tggtgcacca      4260
     tgaagggatt cggttggcta ccggggcatt tcgaaccagc cctataccaa gcctttgcgc      4320
     cgaggctgct gagccaccgc tttccatacg gcgacagctc ctcatggtgc gtcaggcgta      4380
     tgcagcgttg tccaccccgt atacacctgc ttacaatact gttgctcggc cgcctatgga      4440
     acggctgttt cgtaatcggc ttcgagctac gaggcctttt gggattcgtg ctaaggactg      4500
     ttttttagat atgggtgttt cagattttac tgttttgcgt cgaggatgga gtmgatatcc      4560
     cccttggtta ttacagaggc ccagcctcct tttagattta accagtttta aaaaagattg      4620
     caccccagac ataacgtttc agtccgaatt tttcaacatt ttaaataagc atcgtgattg      4680
     tacagtggtg tacactgacg gatcaaaaca aggggactcg gtggggtgtt ctgcagtgtt      4740
     tccaggtcac atcgtaggga ttcgcctgcc cgctgcctac tccgttttct cggcagagct      4800
     gcatgccatc ctccaggcac tggaacacat ccggcgtgct cgaggtacaa aatttctact      4860
     ctgctccgat tcccttagtg ccctacaatc actgctggtc atgtacccgg ctgaaactat      4920
     aacacaattg atccatgacc aactgtacct cctccaacgg cggggtaaag aggtgtcatt      4980
     tctttgggta cctgggcatg ttgggatatg gggaaatgaa gcggctgatg tggctgccaa      5040
     ggcggcctgc agtgacccca atgtcacaga gtgtgccatt cccttgcggg acgtctactc      5100
     tgtgctgcgc cagaggtccc ttcagttgtg ggaggagacg tggctggcag tgacaggtaa      5160
     taaactgcgg ttggttaaac caactgtccg accatggcga acctcctgcc agccattcag      5220
     gcgtttcgaa gtgacactga cgcgccttcg cattggacac agccctttga cccacagctt      5280
     ttttattccg tcgggaggat ccaccgattt gtgatgcttg tggcgtgcaa atcactatac      5340
     gccacatttt aattgagtgt attttatatc gtgctgagag ggcagcggct aatcttggtc      5400
     gtgccctacc cactgtttta gctgacgacg aggcgagtgt gacgaacgtt ttacaatttt      5460
     gtgaacgttc ccgactctgg cctaagctct taggctggag gttttagtgt gttacaggag      5520
     ggctcgctga tgcctctaac atcagcgatc agcgtccctc tatactccga cattttcttt      5580
     taaggacttg taaggttgga tacttcagtc tgccacctta catcgctgat ttgcaatatg      5640
     tgttcgtgtt gttgccaaga cctacattct attgcctgtt cttatttatt tactgttgtc      5700
     taattctttt gtcagggcgc taaaaacctt gctgttgtgc gcccaaaaca tcctatccta      5760
     tccta                                                                  5765
//
ID   Nimb-38_LMi repbase;    DNA;    INV; 5854 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5854
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 216-216 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1746..1766,1812..2057,1984..2256,2148..2726,
FT                 2675..4585,4510..5055)
FT                 /product="Nimb-38_LMi_1p"
FT                 /translation="MRCRSSHPSILQWNCGGFFHHLAELQQLMCHSLLCIA
FT                 YRKRGFLFRGPLPYVATGAISKIAPSVTGSLEVCASMSLPLSPVRCAPHHE
FT                 SQGLWRCVPLCPCHCPQCAVPLTTNLEAVAVRIRVRQELTICSLYLPPDEV
FT                 VCLADLVPWSLNFPRRFSFWGILMPTTLCGVGRRPRLVVGMPRALVAQLPP
FT                 PFLLLGDFNAHHPMWGGTQTSARGRDVEMLLTQRNLCLLNTGAPTHFSVAR
FT                 GTYSAIDLSICSPSLLPHLNWNVHDDLCGSDHFPIFLSLPETQAANRLPHW
FT                 SLHRADWPAYASAAVVTTPLPAGIEVAVQQVTKAIVSAAEKTVPTASASLR
FT                 RKSVPWWTQEIAEAIRERRRALQRTGDTLLGHPGTSARASAHRRHPSVENL
FT                 IAFKRLRARARRLIRQSKKDSWERFVASIGSRASPSRVWTQVRRLFGYRPP
FT                 TGIPSLTIQGALCTDPQAIAEYMAEHYARCSATETYSADFRTFKERVERKQ
FT                 LSFRTRRQELYNAPFSEWEFETALAACPDTSPGPDRIHSQFLRHLSAEFQH
FT                 QLLSLFNRIWADGVFPSQWRESTVIPVLKPGADPLVADSYRPISLTNVLCK
FT                 LLERMVSRRLMWILEDRGLLAPQQGGFRQGRSAIDNLVSLESAIRTAFTRR
FT                 EHLVAVFFDLRKAYDTTWRHHILATLHGWGLRGSLPIFIQNFLSPRSFQVR
FT                 VGTCLSSPHIQENGVPQGSVLSVPLFLIAINGLAAAVGSSVSSSLFADDFC
FT                 IYFSSATIGVAERRLQGAIRKAQSWASAHGFHFSGSKTRVMHFCRRRALHL
FT                 DPELYLGNELLRVEETHRFLGMVFDARLTWQPHLRQLRQKCWKHLNILRCL
FT                 GHTAWGASRPTLLQLYKALIQSRLDYGSIVYDSAAPSALQVLDPVLHSGVR
FT                 LATGAFRTSPVTSLLAEAGVPPLRFRRQRLLASYAAHVHALPHHPNYRLLF
FT                 PDVALPSPRRRPRSGLPIAVRVRSLLSSLESLPIPPTFHYPSRAPPWSVPV
FT                 RSFGIPSYSPHFSLPFPCSSLVRTRPQLRLDLSRDSKASVAPLNLRRQFQA
FT                 VLGSFHGAEIVYTDGSLVDGRCGYAYAHDEHIEQHSLPCGSSIFTAELIAI
FT                 RRALEHLRACPGESYVICSDSLSGLQALDQCFPKHPLVRSIQESVTFLFSL
FT                 AALWSSFGPRDTLEFRGTNAWIGWLSRQLLQAP"
XX
SQ   Sequence 5854 BP; 1179 A; 1731 C; 1462 G; 1482 T; 0 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaaacctcaa tctcaaggtg       240
     tgctactgcc gaggagatgc atggctgttg aggttgaaca gtcgctagcg agcaacctct       300
     gaggaacctg ccgcacctca gttgtataag gcttacccag gcaagcgggg ctctgcctgg       360
     gtggacttag ttccctagct gctcgtggga cgaaatgaaa cgagccaaat agcgtggtgg       420
     acgtaaacca ccgtctccaa gcgtggaaga gttgctttaa tgcagcgacg tatgatcccc       480
     gaacgttccc ttccctggcc acccctggga ggaacggcgg gctaaagaca gggatgagct       540
     tactccccaa gtatcttgtt tgcagtcgaa cagatgggga aactttcatg tcgacgaagc       600
     cacttttctt cgtgaaaacc ttgaagataa gtttggtgaa gtctcggatg tcaagatgag       660
     gagcggttcg gtactgatcg aaacagcgtc atccgcccaa tcgaaagcat tgcttgcttg       720
     cgataagctg ggtgacgttc cggtcagtat aacaccccac aaatcgctaa catgatccag       780
     ggtctgatct atcacaggga ccttctttta cagtcgatga gagctacgcg ccaacctaga       840
     gcgacggggt gtccacttcg tccggcgcgt gcataggggt ccgaaggata atagggtagc       900
     caccggtgct ttcatcttgg cctttgaggc gatacattgc ccgaaaaggt caaggtcatg       960
     atctaccggt gtgacgtaaa gccttatatc cctcccccta tgcggtgttt caaatgctgg      1020
     aaatttggac atatgtcctc cagatgtagc tccagcccca catgtaggga atgcgggcgt      1080
     ccatcacacc cggacgctcc gtgtactcct ccacctatct gtgtaaactg tgggcagcaa      1140
     catccaccct gttctccaga ctgtaccgtg ctccgcaaag agcgaaagat tatggaatca      1200
     agaccctgga tcgactgaca tatacggagg cacgtaaaaa atatgaacgg cttcacccag      1260
     tttccatgac gacgtctttc gctgcagtta catcgtcgcc acccttctga taacacctac      1320
     cgtgcaacaa ccttctgtgg gcccaaaggg ccgtcaaagc tcatctgcct cctcaaggtc      1380
     gggggcactc ctctcactgc cccccactac cacctggggg gcaactccac ccccaccatc      1440
     ggggacacca gtccccacct cccagccgga gaaggagcag cctcctccgg ctcccctcgc      1500
     tcggaagggg tccctcgggg cactcccttc tgaggcttct cctagtgctc cagcgatcca      1560
     gccaatggct gaaggatcca aaacctgctg gtagaagggc ttcccgctct tcttctaccc      1620
     ctggcgccgc tacagagaag ccctcccggc cctgcaaacc taagggccag cgagagggac      1680
     ggaagaagaa gacaaaagac tcttcggtgg ctctaagcca ccgctactca tctctacatc      1740
     ggacgatgag gtgcagatcc tctcactgag gatctccccc gaaggggcat cttggccttt      1800
     aaagtcatta accatcaatt ctccagtgga attgcggcgg ttttttccac cacctggctg      1860
     agctgcaaca gctaatgtgc cattccttgc tctgcatagc gtacaggaaa cgtggtttcc      1920
     tgttcagagg acccctgccc tacgtggcta ccggggctat ttcaaaaatc gccccttctg      1980
     tgacagggtc tctggaggtg tgtgcctcta tgtccttgcc actgtcccca gtgcgctgtg      2040
     cccctcacca cgaatcttga ggcagtggct gttaggatca gagtaaggca ggaactaaca      2100
     atctgttccc tttaccttcc tccagatgag gttgtttgtc ttgctgacct cgtgccttgg      2160
     tcgctcaact tcccccgccg tttctccttt tgggggattt taatgcccac caccctatgt      2220
     ggggtgggac gcagacctcg gctcgtggta gggatgtaga gatgctcttg acacagcgga      2280
     acctttgcct tcttaatacg ggtgctccga cgcacttcag cgtagctcgt ggcacatact      2340
     cggccatcga cctgtctatc tgtagcccga gtcttctccc tcatctgaat tggaacgtcc      2400
     atgatgatct ctgtggcagc gaccattttc ccatctttct gtcgctccca gagactcaag      2460
     ccgcaaaccg gctacctcat tggtcgctcc atagggctga ctggccggca tacgcttcag      2520
     ctgcagtggt tacgactccg cttccggctg gcattgaagt ggctgtccag caagtcacga      2580
     aggccatagt ttccgccgct gagaaaactg tcccgaccgc atctgcgtca cttcgacgta      2640
     agtcggtccc ttggtggacg caggagatcg ctgaggccat ccgggaacgt cggcgcgcgc      2700
     ttcagcgcac cggcgacacc cttctgtaga gaacctaatc gcctttaaac ggctccgtgc      2760
     acgagctcgg cgattgattc ggcagagtaa gaaggattcc tgggagaggt ttgtagcctc      2820
     tatcggctct cgcgcctccc cttctcgggt ctggacccaa gtacggcgcc tcttcggata      2880
     tcgcccaccg acaggaatcc catcgctcac cattcagggt gctctctgca ctgacccaca      2940
     agccatagcc gagtacatgg cagagcacta tgcacgttgc tctgcaactg aaacatacag      3000
     tgcagacttc cgcaccttca aagagagggt cgagcggaag cagttatcat tccgcacacg      3060
     ccgccaggaa ctttacaacg ccccgtttag cgagtgggag tttgaaactg ctctggctgc      3120
     atgccccgat acctctccgg gaccagatcg gatacacagc cagttcctcc gtcacctttc      3180
     ggctgagttt caacaccagc ttctctccct gtttaaccgt atctgggcag atggggtttt      3240
     cccatcacag tggcgggaaa gcaccgtcat cccggtgttg aaacctggag cagatccatt      3300
     ggtggctgac agttaccgcc caatcagcct caccaatgtg ctctgcaagc tacttgaacg      3360
     aatggtgagt cggcggctga tgtggatcct tgaagaccgg ggacttcttg ccccacaaca      3420
     agggggattc cgtcaaggcc gttccgccat tgacaacctc gtctcgctgg aatcggctat      3480
     tcgcactgcc ttcaccaggc gcgaacatct cgttgcggtc ttttttgatc tgcgaaaggc      3540
     gtatgatact acctggcgcc accatattct ggctacactg cacggttggg gcctgagggg      3600
     ctcacttcca attttcatac agaactttct atcgccccgc tcttttcagg ttcgtgtagg      3660
     cacctgtctc agctctcctc atatccagga gaatggtgtc ccgcagggct ctgttctcag      3720
     tgtccccctc ttcctgattg caatcaacgg tctcgcagca gcagttgggt catcagtttc      3780
     ctcctcccta tttgcggatg atttttgcat ctacttcagc tccgccacta ttggtgtcgc      3840
     tgaacggcgg ctgcagggag ccattagaaa ggcacagtca tgggcctcag cccacggttt      3900
     ccacttctcg ggctctaaga cccgagtaat gcacttctgt cgccgtcggg cgcttcacct      3960
     cgatccagag ctgtacctgg gtaacgaact ccttcgtgtt gaagaaacac accgcttcct      4020
     cggtatggtt tttgatgccc ggctgacttg gcagccgcac ctccgtcagc tgcgacagaa      4080
     atgctggaaa catcttaata tccttcgctg tctcggccac acggcttggg gagcatcacg      4140
     cccaacactt ctgcagctct acaaggccct catacaatcg cgcctggact acgggagtat      4200
     agtgtatgac tctgcagcgc catcagcgct acaggtcttg gacccagtcc tccatagtgg      4260
     tgtccgtttg gcgacagggg cctttcgcac aagtccagtg acaagtctgc tagccgaagc      4320
     aggggttcca cccctgcgtt tccgccggca gcgcttactc gcttcctatg ctgcccatgt      4380
     acacgcctta ccccaccatc caaattacag gcttctcttt ccggatgttg cccttccttc      4440
     cccacgacgg cggccaaggt cgggtctacc gatcgcggtc cgtgttcgtt cccttctctc      4500
     ttcacttgaa tcccttccta ttccccccac ttttcactac ccttcccgtg ctcctccttg      4560
     gtccgtaccc gtccgcagct tcggttagac ttgtcccgtg actctaaagc ctctgttgca      4620
     ccgttgaatc tccgccgcca gtttcaggcg gtacttggtt ctttccatgg cgcggaaatt      4680
     gtatacacag acgggtctct agttgatggc cgttgtgggt atgcctacgc ccacgatgag      4740
     cacattgaac aacactcctt accctgtggg agtagtatct ttactgcgga gctgatcgct      4800
     attcgtcggg cacttgagca cctcagagcc tgtcccgggg agtcgtatgt tatctgtagc      4860
     gactccctga gcggcttgca agcccttgac cagtgctttc caaaacaccc cctggtgcgg      4920
     tcaatccagg aatctgttac cttcttgttc agtctggccg cactgtggtc ttcgtttgga      4980
     ccccgggaca cattggaatt tcggggaacg aacgcgtgga tcggctggct aagcaggcaa      5040
     ttacttcaag ccccttagaa attggtcttc aggagaggga cctccgatta agttacacca      5100
     gaaggtactt gggctttgga acactgagtg ggttgactcg cctgccccaa acaagctccg      5160
     tgcagtgaag ctttctacag ctccatggaa gtcctccctg agggcctctc ggaaggagtc      5220
     agttgtcctt tgtcgcctgc gtattggtca cacgtggatg acacatggcc atctacttcg      5280
     acgggaggat cctccacagt gtcgctgtgg cactttattg acagtggtcc acattctgtt      5340
     ggactgtccc cttttagctg ccttacgaca gtcttttgac ctgccagctg cgcttccttt      5400
     tatgcttggt gacgacgctg ctacagctga tcgtgtttta cgttttatcc gtgcagctgg      5460
     gttttatcat ttgatctaaa ggtgggtacc tcagcctgat ctctcaggca cccatctctc      5520
     acagattttt actcttctta ttttgtgttg tctgacctgc ttttactcgt atgttttaga      5580
     atgtgcagag tggctggctc atcctttatt atcctcgtga tcagccagcc acaatattct      5640
     gctgtaactt tttagtccag ttatgtttat ttcctctttg tgttttcttt ttggtgttcc      5700
     gagctagtgt tccttatatt gtgtacccat tgtgtgtttc tcttctgtgt gattcagcgc      5760
     tcgttttttc agcttgcatt acactgtatt gtctttgctc gcaacagggg actgatgacc      5820
     agcagtctag tcccctctaa acaacaacaa caac                                  5854
//
ID   Nimb-39_LMi repbase;    DNA;    INV; 4536 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 20.01, Created)
DT   03-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-39_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4536
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (03-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(364..765,769..966,970..1389,1265..2932,
FT                 2936..4474)
FT                 /product="Nimb-39_LMi_1p"
FT                 /translation="MSYSEVEKYDRPTPIVDVNIASGITPPNPPPYISFHP
FT                 PPIPLAVTTPPPPPPPSSARGEHLLWHLLGMGLPQGTSLPSTQKRSHDKQS
FT                 HNREPHTQGLKAASSLSDLDVASTSSLPDDYSRPQREKEKVAQISGSPNDF
FT                 PGGCPIRDSFRTYGRHTIFGADDHSFGEAIQLGISLFIKMAILQWNICGIR
FT                 ANRAELQLLLTYSPMIICLQETKLNPHDPFHVPHFTSVRSDLPPVAGIPAH
FT                 GGVMMLIRENIHSHVISLDTQLQAVAVRLSLPGFTSHSAISNSIIFTRHPS
FT                 DLLHLIGSSLSISAGRRLQCPPPLWGSPRPCQRLPLGGYLQSSQPHLYAAP
FT                 SPFLLVGDFNAHHPSGVLHAPARGSLLVDIFNHLNLICINTGEPTFLSDST
FT                 HTLSHLDLSICTAQLARRLEWSVLADTHSSDHFPCVIRLLMPIQTGCPHNW
FT                 QLSKANWQLFSSLAAFRGHHFPSIDEQVDHLTNTILFAAECSIPPPRHPTL
FT                 ENSIQYKRLRGQCRRVISESKRASWLSFIKSFNSFTPSSIVWGNLRRLSGT
FT                 SAHSAISGLTVANDVIVDPIAISNTMGRYFAEISSSVNYHPNFLPRKRAAE
FT                 ERTLSFSSENNEYYNTEFTMRELQHALSSSRSSSPGPDGIHIQMLQHLSPE
FT                 GLHFLLRTYNRIWRDGTFPRRWCEAIVIPIPKPGKDKHLPSSYCPISLTSC
FT                 ICKVMERMINARLVWWLESRNLLTNAQCGFRKHRSAVDHLVTLSTHILNNF
FT                 LRKRQTVAVFFDLEKAYDTCWRAGILHTLHAWGIRGRMPIFIQEFLKDRVF
FT                 KVRVGSTLSNSFIQENGVPQGSVLSVVLFAIAINPIMGCLPPGVSASLFVD
FT                 DFAIYCSSQRTCSLERQLQRVLTISTRGAPTMGSAFPRTRQSVTSGGAQSF
FT                 FHRLFILAQMFFHSSRRKTSWDSRLTGNFVGPPMSPLWLPGVPAHLMFSEC
FT                 CVALHGVRNGLLSSDCTAPLSARNWTMGVSCTPLPDRQLYAVSTRYITKGS
FT                 VWQWEPSIPVLWKVYTLKPLNYRYHTGGTSYSVDMQAGCHLCVATQRMLSF
FT                 FDDSHDRLFASRPSSLLPPGVRFRMLLRQLDFMPPATFPTGVGSFPPWLYP
FT                 EIRVNLKLHSLPKDTTPGPVYRNEFLALRTQLSDHIFLYTDGSKTNHGVGC
FT                 AMVLGDESLQYRLPDQCSIFTAELFALYQATQHLRRHSPSHGVICSDSLSA
FT                 LQSLCALYPVHPIVQRIQKCLHSLMVSGTTVMLLWVPGHAGVLGNEIADAA
FT                 AKAAISLPRLAIHSVPSEDLRAVVSRRVVSLWYSIGLPFKTTNSGDQTLPF
FT                 AWSTSSRPSRREVVIIARLHIGHCRFSHRHLLCGDPAPLCATVPLTVRHLL
FT                 VQCPFFNRLRQTLCFPSELSDVLADDPRSVDRVLLFIHHTNMVKEI"
XX
SQ   Sequence 4536 BP; 999 A; 1395 C; 942 G; 1199 T; 1 other;
     cagacgagga acttggggca aacctggatg gcgtggtgtt aaattcatcg cagagaggcc        60
     ccaagggtaa ctgtgttgat acaggagctt ttatcctggc tttcgaaggg gatactctac       120
     tgaaaaagta aaggtcatga tttacagata tgacgtgaag ccttacatac caccacctag       180
     tgctgcttcc gttgcctccg cttcggcatg tgtcttagat gcaacaccaa ctgtttgtgg       240
     tgacggcgcc ccgggacctt gcaccccaca cctagcgcgt aaactgccga ggcccacatc       300
     tcctgctcac ctgattgcca attatgaaag agaaaaaatt caggagtaca agacctagat       360
     cgcatgtcat attctgaggt cgaaaagtat gaccgtccca cccctatcgt tgacgtcaac       420
     attgcctcag gcatcactcc ccccaacccc cctccctaca tttcctttca ccctcccccc       480
     atccccctgg cagtaaccac ccctccccct cccccccctc cctcctcagc cagaggagaa       540
     catcttctct ggcacctgct gggaatggga ctccctcagg gaacctccct ccccagcact       600
     caaaaaagaa gtcatgacaa gcagagtcac aatcgggaac cacacactca gggcctgaag       660
     gctgctagtt ccctctctga cttggacgtc gcctcaacca gctcccttcc tgacgactac       720
     tctcgtcctc aaagggagaa agaaaaagtg gcgcaaatct caggatgaag tcccaatgac       780
     ttcccaggtg gttgcccaat cagagacagc tttagaactt atggacgtca caccatcttc       840
     ggagctgacg accacagttt cggagaagca atccagctag gcatctccct atttatcaaa       900
     atggctattc tccagtggaa tatttgcggt atccgtgcta atagggcaga actgcagctt       960
     cttctgtgaa cttactctcc catgatcatc tgcctgcagg aaacaaaact aaaccctcac      1020
     gatccctttc atgttccaca tttcacctca gtccgttctg acctcccccc agtagcagga      1080
     attccagctc acgggggcgt catgatgctc atcagagaga acatccatag ccacgtcatt      1140
     tccttagata cccagctcca agctgtagct gtcagacttt cccttcctgg cttcacctct      1200
     cactctgcaa tatctaactc catcatcttc actcgtcacc cgagcgatct actgcatctt      1260
     ataggcagct ccctctccat ttctgctggt cggcgacttc aatgcccacc acccctctgg      1320
     ggttctccac gcccctgcca gaggctccct cttggtggat atcttcaatc atctcaacct      1380
     catctgtatt aatactggtg aacctacatt cctatcagac tccacacata ccctctccca      1440
     tctagacctc tcgatctgta ccgctcagct tgctcgtcgg cttgagtggt ctgtccttgc      1500
     agatacacac tccagtgacc atttcccgtg tgtcattcgc ctgctgatgc ccatccaaac      1560
     agggtgtcct cacaactggc agctttctaa agctaactgg cagctctttt cctccttagc      1620
     agccttcagg gggcatcatt tccccagtat tgacgaacag gttgaccatc tcactaacac      1680
     tatcctcttt gccgccgaat gttccatccc tcccccccgg catcccacac tggagaatag      1740
     cattcagtac aaacgattgc gtgggcaatg tcgccgcgtc attagtgaaa gcaaacgagc      1800
     tagctggctc tcattcatca agtcttttaa cagtttcacc ccctcttcca ttgtttgggg      1860
     caacctccgt cgcctttctg ggacctctgc tcattccgcg atctccggcc ttactgttgc      1920
     aaacgatgtc attgtagacc ccattgccat ctcgaacacc atgggccgct acttcgccga      1980
     gatttccagc tccgtgaact accatcccaa tttcctscct agaaaacggg cagcagaaga      2040
     aaggacactc tctttctcct ccgaaaacaa tgaatactac aacaccgaat ttaccatgag      2100
     ggagcttcaa catgcactct cctcgtcacg gtcctcctcc ccaggaccag acggcatcca      2160
     tatacagatg ttacaacacc tgtctccaga gggcttgcat tttctccttc gaacatataa      2220
     ccgcatctgg agggatggga cgtttcctag acggtggtgt gaagccatag tcattcctat      2280
     acctaagcct ggaaaggaca aacatctccc ttccagctac tgtccaatct ccctcaccag      2340
     ttgcatttgc aaggtgatgg aacgtatgat taatgctcgg ctggtatggt ggctcgaatc      2400
     taggaacctc ctcacaaacg cacagtgtgg atttcgtaag caccgctctg ctgtcgatca      2460
     tctcgtcacc ctatccactc acatcttaaa caatttttta cggaagcgtc aaacagtggc      2520
     cgtatttttt gacttggaaa aggcatatga tacctgttgg agggcgggca tcctccatac      2580
     tttgcacgcc tggggaatcc ggggtcgtat gcctattttt attcaggaat ttttaaaaga      2640
     tcgcgtattt aaagtgcgtg taggttcgac cctgtcaaac agttttattc aagagaacgg      2700
     tgtcccccaa ggctcagtgt tgagcgttgt cctctttgcc attgcaatca acccaatcat      2760
     gggttgtctc ccaccaggcg tttcggcttc tctgtttgta gatgactttg ccatctactg      2820
     cagctcccaa cgaacgtgct ctctcgagcg acaacttcag cgagtcttga ccatctctac      2880
     tcgtggagca ccaacaatgg gttccgcttt tccgcggaca agacagtctg tatgaacttc      2940
     tggcggcgca cagagtttct tccaccgact cttcatcttg gcccagatgt tcttccattc      3000
     gtcgagacga aaaacttcct gggactcacg tttgacagga aactttgttg gtcctcccat      3060
     gtctcctctt tggttgcccg gtgtacccgc tcacttaatg ttctcagagt gctgtgtggc      3120
     acttcatggg gtgcggaacg gtctactctc ctccgactgt accgctccct tgtccgctcg      3180
     aaactggact atgggtgtat cgtgtactcc tctgcccgac cgtcaacttt acgccgtctc      3240
     aacacgatac atcaccaagg gatccgtttg gcaatgggag ccttctatac cagtcctgtg      3300
     gaaagtctat acgctgaagc cgctgaatta ccgctatcat accggaggga cgtcctactc      3360
     agtcgatatg caagccggtt gtcatctatg cgtggccacc caacgcatgc tgtctttttt      3420
     tgacgactcc cacgaccgtc tatttgcatc gcgtccatca tctctattac cacctggagt      3480
     ccgctttcgt atgttgcttc ggcaactaga ctttatgccc cctgccacat tcccgacggg      3540
     tgttggctcc ttcccaccat ggctctatcc ggagatacgt gtcaacctca aactacactc      3600
     acttcccaag gacactactc ctggtccggt ctaccgcaac gagtttcttg cactccgcac      3660
     acaactttcc gatcatatct tcctctacac cgatggttca aagaccaacc atggtgttgg      3720
     gtgtgccatg gtactcggcg atgaatccct ccaatatcgt ctgcctgacc agtgctcgat      3780
     cttcactgcg gagctctttg ctctatatca ggccacccag caccttagac gccactcgcc      3840
     ttctcacggt gtcatctgct cggattcact gagtgctctt cagagcctct gcgctctata      3900
     tccagtccac cccatagtac agcggattca gaaatgcctc cactcgctaa tggtcagcgg      3960
     gacgacagtg atgctactgt gggttcctgg ccatgctgga gtgctgggaa acgaaattgc      4020
     ggatgctgct gcaaaggcag ccatttccct ccctcggctt gctatccatt ccgttccgtc      4080
     ggaagacctc cgtgctgtag tctccaggcg agtggtatcg ctctggtatt ccattggtct      4140
     tcccttcaag acaacaaact cgggagatca aacccttcct tttgcgtggt ctacttcctc      4200
     acggccctct cgccgcgagg tggtcataat agctcgcctg cacataggac actgtcgctt      4260
     tagccaccgc cacttactgt gtggcgatcc tgccccactt tgcgccactg taccattgac      4320
     tgtgcgccac cttctggtgc agtgcccgtt ttttaaccgt ctacgtcaaa ctttgtgttt      4380
     tccgtctgag ttgtctgatg ttttagccga tgacccgcgc tctgttgatc gcgtcttact      4440
     ttttatccac cacactaaca tggtaaagga aatttaactc tgtccatgct aaatacagtc      4500
     atatttcgtc atgggcgctt atgaccatag tagttt                                4536
//
ID   Nimb-3_BTa  repbase;    DNA;    INV; 5768 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5768
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 728-728 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1915..5535
FT                 /product="Nimb-3_BTa_2p"
FT                 /translation="MALLQWNADGYYAHTAELNLLINRIHPSVIALQETKF
FT                 KPSHKPSIKNYVLFKKDYTEGLSACGGVALFAKNSHSPRQIPVQSNHQVVA
FT                 IQLTISNMNISICNIYCQKITEDELVSIKTQLPSPFIICGDFNAHNPIWGG
FT                 NKLDTNGKACENFIFNNQLALLNSQIPTFFSYSSKTFSSIDLTICSLDLLP
FT                 KLQWFVHGDLCSSDHFPIITTFLNPKQSAPHDPFTKWKLDQADWSKFRSIC
FT                 SSVTELPENPDEKLLKFKEVIFHAATLSIPHFKAGKNKRILVPWWNNDCQL
FT                 VISQRNKLFRLFKRDPTDENWINLKKSRAIAKRTIREAKRKSWFKFVSQLT
FT                 SNTPVSEVWKNIRKIAGNHQSLDFPNIIHDRKIFSDPKDIADIIALNFQKN
FT                 SSNENYSKRFLDFKSREETSVPDFTSQTNSELYNKLFTFKELKQVTAKLKK
FT                 SAPGPDQVHNLMIKNLPDNMIHFLLDMFNSYWTSQYFPEEWHMATVIPIPK
FT                 DSTNRLDASKLRPISLTSTLCKIYEQLVAKRLTWFIEKHSLLSNIQSGARK
FT                 KRSTLDNLVRLQSQILKGFSKKAYTVALMFDIQKAYDTTWKHKVLKTLHKW
FT                 GLRGNLPFFIQNFLRDRKFQVKVNSVLSKPTSQENGVPQGSVLSVLLFLIA
FT                 INDITXCLPQNVHKSLFVDDFCIYFTTKNVKYAKLLLQKVIQNLEDWSEKS
FT                 GFTFSPXKSKGIIFSKKHKIPRISLRMGGXKLEFVESIRFLGLIFDRKLTW
FT                 KEHILALESKCKQRMNIMKYLAHTSWGADKPTLLKIYRSFIRSKLDYGSIL
FT                 YGSANRSLLKKLDSIHNSCIRLATGAYRTSPVVSIEVEAQEPSLQHRRYQL
FT                 LAGYVTKLVSHPSNPAIEDCFEARAEIPFYDTFFSKFNFSDVIPAANLNFP
FT                 PWTPPNIEIHLNSCSLSKSDTSHAELRSNFFSTLENYQDYKQIYTDGSKLE
FT                 NSQTGCAFITQNESRSFKLSPIASIFTAEAFAIHQALNFLQETEDKKAIIC
FT                 SDSLSVLSALQTVPGSNPLIIQIQNSLHHLLSLNFSIAFCWCPGHVGVAGN
FT                 TEADTLAREAASSAGPFLPLTVIAEDLNKYIKKEIVKNWQQEWTVYCQHRN
FT                 PPMSVFPQLSGLPRADQVKLTRLCIGHTSFTHQYIIKKVQPPTCISCNVPL
FT                 SVKHVLITCPTYQQLRSKIFPPLSDLHTILSKYFHEIPPFFKRINLQI"
FT   CDS           join(337..1101,1094..1906)
FT                 /product="Nimb-3_BTa_1p"
FT                 /translation="MKRGRKQKRSSKMDCSSDESXSSKISKQLTPPSSQSL
FT                 PTDPHPTAVSMMPQDDINQSIAQPITPTMQSVVTDKTMPPSPAAPSTSYST
FT                 ACKSAQNSMTTITGDHVSKKHAIIIPANQSLTLTDYLNEISKVIPPSDILY
FT                 ASKISNNRICIYLSSEKLVDNACNSRFINTAVGPLPIRRLINPAFRLVLSN
FT                 VMPNMTNEKLIEAVSQFVKGVSPMHLISAGLKDPKFQHIKSFRRETFILKD
FT                 ANSHALPPSLLIPSSPHDGEEVRIFLSVEDPRCFHCNYLTSHKTAECAKKL
FT                 SHSTENGSPSNVGSLADRLQKHQMAPEQLVQEETSAGKRMDVETENLDTEL
FT                 RDTLNTNIKPSEMIPETNPTSSVHSPLQNTEVNSSSPPNVKPQDETMSKNS
FT                 ITYPFKPPSSNKQKLLDEENKLLYTAIKNVLQDNSEVKFTSSDLKKIFAET
FT                 KNSRNPLEIVSVYTDDFEKLRDVLITIKSEKLNRNLKGRISRLIEAIEMNL
FT                 DSPEESQLEVADDEMLSDFSSNCASPPPEN"
XX
SQ   Sequence 5768 BP; 1782 A; 1373 C; 895 G; 1705 T; 13 other;
     agatcggtcc gaccgcgcgc gcgcgattgt gctccggcga attttcgttt tttcgagtcg        60
     atctggcgcg aaagtttgaa tgaaasttgt atcggtttgt gcagtttttc gtgccctwtc       120
     caaaggatcc ttttggatcc ttgtgtgacc tmgtactggw ccwttgtccc cctttgtttt       180
     tttgcgaaat cgtcattkct ttccctaaaa tagaatgtga tcacaaaact ataatcgcga       240
     gtgaaattgt gctgtgtttc catggatacc gtcgcggcgg agaawccata ggtgacgctt       300
     ccagtcktgt ctactctcct ctccctcctc ttcacgatga aacggggcag gaaacagaaa       360
     cgctcttcga aaatggactg ctcctcagac gaatcawcct cttcaaaaat tagcaaacag       420
     ctgactcccc cctcctccca atcgctcccc actgatcctc atcctacggc cgtctccatg       480
     atgccccagg acgacatcaa ccaatccatc gcccagccta ttactcctac tatgcagtcc       540
     gtggttactg ataagaccat gcccccctct cctgccgctc catctacttc ctactctact       600
     gcgtgtaaga gcgcacagaa ctcaatgaca acgattacag gtgatcatgt ttcgaagaaa       660
     catgctatca taattcctgc taaccaaagc cttacattaa ctgattatct gaatgaaatt       720
     tcaaaggtta ttcctccgtc agatattctt tatgcctcca aaatttctaa taatcgaata       780
     tgcatctatt tatcatctga aaagctggtt gataatgctt gcaattcaag atttatcaac       840
     actgctgtcg gcccccttcc catcaggcga ctcattaatc ctgcttttcg tctggtctta       900
     tcaaatgtaa tgcctaacat gaccaacgaa aaattaattg aagctgtttc ccaatttgta       960
     aaaggtgtct cacccatgca cctcatatcg gctggactga aagaccctaa atttcaacat      1020
     attaagtcct ttcgtcgtga aaccttcatt cttaaggacg ccaactctca tgccctccct      1080
     ccatccctct taatcccctc atgatggaga agaagtccga atcttcttat cagtagagga      1140
     cccacgatgt tttcattgca attacctaac cagtcacaaa actgctgaat gtgcgaaaaa      1200
     attatcgcat tcaactgaaa atggaagtcc ttcaaacgtc ggatctcttg ctgatcgact      1260
     ccaaaagcac caaatggctc ctgaacagct agtgcaggaa gagacatcag cagggaaacg      1320
     catggatgtt gagactgaga atttagatac tgaacttagg gacaccctca atacaaatat      1380
     aaaaccctca gagatgattc cagagacaaa tcctacttcc tcggtgcaca gccctttaca      1440
     aaatactgag gtaaattctt cctctccccc aaatgttaaa cctcaagatg aaacaatgtc      1500
     aaagaactcg atcacctatc ctttcaaacc accctcctca aataaacaaa aacttctgga      1560
     cgaagaaaat aaactcctct acactgccat taaaaatgta ctgcaagata actcagaggt      1620
     caaatttact tcatcagatt tgaagaaaat ttttgctgaa actaaaaatt ctagaaatcc      1680
     cttagagatt gtttcagtat acaccgatga tttcgaaaaa cttcgtgatg tattgattac      1740
     aataaaatct gagaaattga atcgaaattt aaagggaagg atctcgcgcc tcattgaggc      1800
     tattgagatg aacttagatt ctcccgaaga aagccagcta gaggttgctg atgatgagat      1860
     gctttctgat ttttcctcca actgtgcctc tcctccccct gaaaattaaa cattatggcc      1920
     cttttgcaat ggaatgcgga tgggtattat gcccatactg ctgaattaaa cctccttata      1980
     aatcgaatcc atccatctgt cattgcactt caggaaacca aatttaagcc ctcccataaa      2040
     ccatcaatca aaaattatgt gttattcaag aaggattata cagaaggcct atcagcttgt      2100
     ggcggtgttg ctctttttgc caaaaattcc cactctccac gacaaattcc agtccagtcc      2160
     aatcaccagg tagttgctat tcagttaacc ataagtaaca tgaatatttc tatttgcaac      2220
     atatactgcc aaaaaataac tgaagacgaa ctcgtctcaa ttaaaacaca gcttccatct      2280
     ccattcatta tttgtgggga ttttaatgct cataacccca tatggggagg aaataaatta      2340
     gacactaatg gtaaagcttg tgaaaatttt attttcaata atcaactggc gctcttaaat      2400
     tctcaaattc ctaccttttt ttcttactcc tccaaaacat ttagtagcat tgatctgacg      2460
     atatgctccc ttgatctttt gcccaaatta caatggtttg tccatggaga tttgtgttcc      2520
     agtgatcact ttccaattat cactaccttc ttaaatccta agcaatcagc tccacatgac      2580
     ccatttacaa aatggaaatt agatcaagct gactggtcta aatttcgttc aatatgcagt      2640
     tctgtgactg aactccctga gaatccagat gaaaaacttt tgaaattcaa agaggtaatt      2700
     tttcatgctg caacgctttc tatcccccat ttcaaagcgg ggaaaaataa aagaatctta      2760
     gttccttggt ggaacaatga ttgtcaactt gtaatttctc aaagaaataa gcttttcaga      2820
     ttatttaaac gtgatcctac tgatgaaaat tggattaact taaaaaaaag tcgagcaatt      2880
     gccaaaagaa caatcagaga agctaaacgt aaatcatggt ttaaatttgt atctcaactc      2940
     acatccaaca ctcctgtctc agaggtatgg aaaaacattc gtaaaattgc aggaaatcat      3000
     caatctttag attttccgaa catcatacat gatcggaaaa ttttttcgga tcccaaagac      3060
     attgctgata ttattgcctt gaatttccaa aaaaattcaa gcaatgaaaa ttactccaaa      3120
     cgcttcttag attttaagtc tagagaagaa acttccgttc cagatttcac ctctcaaact      3180
     aattctgaac tatataataa acttttcacc tttaaagaac tgaaacaagt tactgcaaaa      3240
     cttaaaaaat cggctccggg tccagatcaa gtacacaatt tgatgattaa aaatcttcct      3300
     gataatatga tacacttcct tctggatatg ttcaactcat attggacgtc tcaatatttc      3360
     ccagaagaat ggcacatggc tacagtcatt cctataccaa aagatagtac taacagattg      3420
     gatgcttcaa aacttcgacc aatctcactg acttctactc tgtgcaaaat ctatgagcaa      3480
     cttgttgcta aacgtctcac ttggtttatt gaaaaacatt ctctcctctc taatattcaa      3540
     agcggtgctc gaaaaaagcg ctcaacttta gacaacctgg ttcgattaca gtcacaaatt      3600
     ctgaaaggct tttccaaaaa agcatacact gtcgccctca tgtttgacat tcaaaaagca      3660
     tacgacacta catggaagca taaagttttg aaaactttac ataaatgggg cctgcgtggt      3720
     aatttacctt ttttcataca aaatttcctg cgtgatcgga aatttcaagt caaagtcaat      3780
     tctgttctct caaaacctac ctctcaagaa aatggggtcc ctcaaggcag tgtcttgagt      3840
     gtgctgcttt ttctcatagc tatcaatgat ataactcwat gcctaccgca gaatgtacac      3900
     aaatctctat tcgtggacga cttttgcatc tatttcacaa ctaaaaatgt caagtatgcc      3960
     aaacttctcc tccaaaaggt tattcaaaac ctagaagatt ggtcggagaa atcagggttc      4020
     accttctccc cawccaaaag taagggtatc atcttttcta agaaacacaa aatccctcgt      4080
     atttctctgc gtatgggagg gamaaaactt gaattcgtcg aatcgattcg cttccttggt      4140
     ttaatttttg acagaaaatt aacatggaaa gaacatatat tggcactwga atccaaatgc      4200
     aaacaaagaa tgaatattat gaaatattta gctcacactt cgtggggagc tgataaacca      4260
     acgttgctta aaatttacag atcgtttata cgatcaaaac ttgattatgg ttctattctt      4320
     tatggctccg caaatcgctc tttacttaaa aagttagaca gtattcataa ctcttgcatc      4380
     agactagcta ctggtgccta tcggacaagt cctgtcgtta gtattgaagt tgaagcacaa      4440
     gagccctcac ttcaacacag aagatatcaa ttactggcag gctatgtcac taaactagtg      4500
     agccatccaa gtaatcctgc tattgaagat tgctttgagg cgagggctga gatcccattc      4560
     tatgatacct tcttttctaa gttcaatttt tctgacgtta ttccagctgc aaatctcaat      4620
     tttcctccct ggacccctcc taatattgaa attcacctca actcctgctc tttatcaaag      4680
     tccgatacat cccatgccga attacgaagt aactttttct cgacattgga aaattatcaa      4740
     gactataaac aaatttacac cgatggatcc aaactggaaa acagccaaac aggatgtgct      4800
     tttatcacac aaaatgagtc tagatccttc aagctgtctc ccattgcctc aatttttact      4860
     gccgaagcct ttgctataca ccaagcatta aattttcttc aagagacaga agataaaaaa      4920
     gccattatat gctctgactc actgagtgtt ctgtctgccc tccaaactgt ccctggttcc      4980
     aatccactca ttatccaaat ccaaaattcc ctacatcatc ttctctccct gaatttctca      5040
     attgcattct gctggtgccc gggacatgta ggcgttgctg gaaacacgga agccgatact      5100
     ctggcgagag aagccgcttc atctgctggc cccttcctcc ccctaactgt catagccgag      5160
     gacctcaaca agtacatcaa aaaagaaatc gtcaaaaatt ggcaacaaga gtggacagtg      5220
     tattgccaac acagaaatcc tccaatgtcc gtattccctc aactttctgg tctaccacga      5280
     gcagatcaag taaaattaac ccggctgtgc attgggcaca cgtctttcac ccaccaatac      5340
     atcatcaaga aagtccaacc cccgacctgc atctcttgta atgtccctct ctcagttaaa      5400
     catgttttaa taacttgccc cacatatcaa caattaagat ccaaaatttt ccctccactt      5460
     tctgacctcc ataccatcct ttcaaagtat tttcatgaaa tccctccctt ttttaaacga      5520
     attaatctcc aaatttaatg tattctttcc ttgtccatct ccaaatttaa tgcattcttt      5580
     ccttgtccta aattttaatt ttctactacc ctttttgtga ctcctacttc ttaaatattt      5640
     aaattatgtt tttttgacga tctctcctca tctacggtgt taatggcttc aatgttaaag      5700
     caccaaataa atgtatttac caaccaacca tacatacata catacataca tacatacata      5760
     catacata                                                               5768
//
ID   Nimb-3_RPr  repbase;    DNA;    INV; 1502 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Nimbus-type non-LTR retrotransposon: consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Nimb-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1502
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3480-3480 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1502 BP; 478 A; 239 C; 343 G; 440 T; 2 other;
     ttatattcac ggcggaatta tttgccatta aaaaagcaat ggagtactta ttgaatagta        60
     aagaaaagaa aattattatc tgctctgact caagaagctc tctggagkca atatgcaaat       120
     tagatacgga caacaagctg atccagtcca tacatacgct gctatactcc tctgtacgca       180
     gtcacaaatc agtcattttt ctgtggatcc cgggtcacac tgggataagt aacaatgaaa       240
     ccgctgacag ggctgctaaa gatgccacgt tactggacga taagtatgaa attattctgc       300
     cctcagactg gaaaagtttt cttagaccaa agattatgtc ccagtggata agagactggg       360
     aatcagttcc tctaactaac aaattgagga atataaagtc aacaccaatg gagtggttaa       420
     catcatgtcc gaaacactcg ccgtgaggag gtggtgttag ccaggttgag gattggccac       480
     acgctattta cccatggtta catcttcaaa agagaagaac cacctatttg ctctgagtgt       540
     aataacgtcc ctttaactgt acgccatatc ctggttgaat gccccaagta ttccagagct       600
     aggcaaaagt gtaacatttc ctcacaaatg gaagaagtat tgaaggacga tgaaaacagc       660
     gtacaaaaca ctctgcgatt tctgaaggat attaatgttt ttaattcaat gtaacaatag       720
     acactttact acgcgaggtc acttttaama tacaaactta tagaaatcgg tattttacaa       780
     aagtttggta gcagtaaaaa taacagtagt atttgataat agtaacaatt taggaaggag       840
     taggttaggc agtgtgaatg tgtgtgtgaa agaggtgtag gggggccaat gccggggcag       900
     gggtggcaaa cttttgtctt cttgtctcgc aggacgtctt cctgcacttt ctcgggagcc       960
     actgctttct aggacgggtg ggtctgtgtc gggattggca ccctggcacg cgtatgaatg      1020
     ggctgcgtaa atgtaaatag atttaggatt gtaaatgagt gagaggaata tagagtactc      1080
     cactcaatgt atatatagga atataactat taggatgaat gtatttatta ggatgaatgt      1140
     atttattagg atgattgtat ttattaggat gattgtattt attaggatga ttgtatttat      1200
     taggatgaat gtatttatta ggatgagtat atgagtgtac atataaattt tgtgtaaata      1260
     ggttttttta aaatttaggt tagatctcta tggggtgcga ggaatatcga gtactccacc      1320
     ccaacattag ttagttaggt tagaagaaaa taggagttag gccaaccgtt aggtttgtat      1380
     cgatcagatt gactaggtgt aggttaggct gtgtagtaaa gtgtctattc tacagtatag      1440
     tttaggtgca aaggaccctt gttgttgcgc accttacaaa accccaaaac aaaaaaaaaa      1500
     aa                                                                     1502
//
ID   Nimb-40N1_LMi repbase;    DNA;    INV; 211 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Nimb-40N1_LMi; non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-211
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 217-217 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 211 BP; 35 A; 86 C; 37 G; 53 T; 0 other;
     cccccagggg gctcacggtt ctttcgtgag tacgtgcgtg gcgagcacgg ggccccgagc        60
     taatgcagtc ttccttcctt ctttacttcc cggactgcat ttcctttccc cctcccctcc       120
     tttcctatcc tcactccttc ccctccccac cgggggactg ataacctcag tagtttagtc       180
     cccctatccc aaccaaacaa cccaacccaa c                                      211
//
ID   Nimb-40_LMi repbase;    DNA;    INV; 6239 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 20.01, Created)
DT   12-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6239
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 218-218 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(683..2089,2080..2763,2646..3980,3917..5809)
FT                 /product="Nimb-40_LMi_1p"
FT                 /translation="MKRVKLDNGRDTAVSEGRKKNNAPSYDKRTFPSLSTP
FT                 WEEGQARRLGVKPFPRYLVCTRTDGGTFTATKPLFFVEHIEDKFGEVETMS
FT                 KMRTGSLLIKTVSAAQSAALCACDHLGDVPVSITPHQSLNMVQGVIFHRDL
FT                 LLQTDEELRANLERRGVHFVRRVQRGPKDHRVDTGAFILAFEGDTLPEKVK
FT                 VMIYHCCDVKPYVPPPMRCFRCMRFGHMSSRCTAVPVCGECGRPLHEGNPC
FT                 VPPPVCVNCHEHHSSRSPECPVYKKEKKIQEYKSLDRLTYQEARRKFERLH
FT                 PVQLSTSYASVTSFTPPPSSSHSHPILPPPPPAPPLPPSQRPPSSSQPEKC
FT                 SPSLALAGEGAPSQGSSSRRPPDRRSSASSRQPDIQADNTKVARSSSVPDL
FT                 TDSSSLSGTCPSRPAREKEKEKRKKKQKSQDKAPPVVLEAPPLSSQPNNPT
FT                 ELVSDPLFMDVVPPSSVTDVDPALPSFVTCISPFAFHMDPRSVLIQWNCNG
FT                 YYRRLLELKHLIASYSAACVVLQESHFTDGHSPTLRGFRAFCRNRVRPLQA
FT                 SGGVCTLVRTDVVSSWIPLRTTLEVVAVRVHLHTPLTICNLYLPPDRPPTS
FT                 AALTALLQQLPPPFLILGDFNAHHLSWGSAYTTSRGRLVDQFIADHDLCLL
FT                 NDGSPTHFSAAHGTFSSIDLSLTSPPPPFSLSFAGHRMTTFATVTTFRCRS
FT                 RHLFLHRPFTHFSPPPLFPFFRWSPHDDLCDSDHFPLILSLPSHWTRDRIP
FT                 RWVFRHADWPLYTSQVVFTPSPSDSIDEVISDVSNAITRAASIAVPQSTGP
FT                 PRRRPVPWWNATIASAIRERRRALQHLKRHPSRAALVNFKRLRAKARYIIK
FT                 QSKRVCWERFLSSLGSSVPLSRVWAMLRSIQGCQRPSSIPGLALPDGVCTD
FT                 PLVIAEHLAAHFAKASATASYPVAFRLKKQQAEASNLCFTTHREEPYNKPF
FT                 TEWELRLALSSSHDSAPGPDSIHNQLLKHLSPPQRQYLLQVFNHIWLQGVF
FT                 PSQWRDSIVVPVIKPGKDPSSLDSYRPISLTNVPCKLLERMVARRLCWVLE
FT                 SRGLLSPYQCGFREGRSPIDHLLRLETAIRKAFSKRQHLVAVFFDLRKAYD
FT                 TAWRRHILCTLHDWAYEAPYQFLSVSFYPAACSVLGLRGSLPIFISQFLSR
FT                 RMFRVRVGSSFSSPQIQENGVPQGSVLSVTLFLIAINGLVSSVGSLVTPAL
FT                 YVDDFCIWYSSHSVASAERQLQGAIRRASTWALSHGFQFSPSKTRVMHFCR
FT                 RTTVHPDPELFLGTQRLEVVAQHRFLGLLFDKKLTWLPHIRQLKISCMRKL
FT                 NALRFLAHSSWGADRTTLIHIYRALIQSRLDYGCQVYGSAAPSALKLLDPV
FT                 HHCGIRLATGAFRTSPVDSLLAEAGIPPLQTRRHQLLVSYAIAIRKFPGHP
FT                 TYHVLFEGDGLRTPDTRPRVGLPVGLRLASLCRDFNLPSLDCMRRAIPRTP
FT                 PWLVPRPQIRLDLYHAPKASVSPIIFRRLLHTVLEEFQGATIFYTDGSKFA
FT                 GHTGYAFTSPIGVECHSLPESCSVFTAELTAISRALHFIKQVALDRVLICS
FT                 DSMSSLQAIDRCYSSHPLVIDIHDLLADLRRTACSVAFLWVPSHVGILGNE
FT                 QADQLARVAVTPCPFPWVIPGADLRVQMRSLLIQDWNTNWQATALSNKLRS
FT                 IKSTTAAWSSSLRPSRRESTVLCRLRIGHSRLTHGFLLRNEPPPHCGCGAL
FT                 QSVAHILVECPLLLALRAKYGIPHSLPSVLANDSRIADRVLGFIRESGFYS
FT                 RL"
XX
SQ   Sequence 6239 BP; 1193 A; 1888 C; 1432 G; 1726 T; 0 other;
     ccccaggggg cccacagctc ttttgtgggt acgtgtgtgg cgcgcacggg tccccgagcc        60
     attgcagcct ttcttcttac attcctgggc tgcattacct cccccagttc ctctcctcct       120
     ccccatccta attcctcccc gtccctctca tctccccccc tctctcggtg gtttccttta       180
     aaacggcacg gctattccta tggttccgat gatggttgta gcaattttga tcttcgtcgt       240
     tttcctctgt tttcggcata gttcggtccc cctcggggtt tgacctccac aaaaattcac       300
     agttactagt gtgagccatt tggggaagaa ctcccgacct agcccctatg gcgtggatcc       360
     caatcctttc ctttcccact tccttccttg ccatagcccc ctcccccgct aggtccccag       420
     cacgtgtagc cagtccgtgt gggggggggg gggggctgtt atgtaccctt atggctgagc       480
     cccctgacaa cgcagggatc acactgctgg tacctgagct gcaacctccc catgcaggcc       540
     aaggagtcga tacccgtcct cgtggggtat cagggctccc ggcaatggcc atcgtgccag       600
     gtggcctttg ctgtggctgg gtggcgccca tggggagagc cccggatcgg agtgggtggt       660
     accagggcgg acgtttcgca cgatgaaacg tgtgaaatta gataatggtc gtgatacggc       720
     cgtctcagaa ggcaggaaga agaataatgc tcctagctac gataagagga cctttccctc       780
     tctgtctacc ccctgggagg agggccaggc acgtcggctt ggggtgaaac cctttccacg       840
     ttacctggtc tgcaccagga cggatggagg gacgttcacc gccaccaaac cattgttctt       900
     cgttgaacat attgaggata agtttgggga agttgaaacg atgagcaaga tgcgcactgg       960
     atcactgcta attaaaacag tctctgctgc ccagtctgca gctttgtgtg cctgcgacca      1020
     tcttggcgac gtcccagtgt cgataacccc tcatcagtca ctgaacatgg ttcagggagt      1080
     aattttccac cgcgacctcc tcctccaaac tgatgaggaa ctccgggcca acctcgaacg      1140
     gcgaggtgtt cattttgttc gccgtgtgca gcgaggccct aaggatcatc gcgtggatac      1200
     cggcgcattt atcttggcct tcgaggggga tactctccca gagaaggtca aggtaatgat      1260
     ctatcattgt tgtgacgtga agccgtacgt tccacctccc atgcgatgtt tccgatgtat      1320
     gcggttcggg catatgtcct ctcgttgcac agcagtccca gtatgcggtg aatgtggacg      1380
     tccactccat gaggggaacc cctgtgttcc acctcctgta tgcgttaatt gtcacgagca      1440
     ccactcttct cgctctccag agtgccctgt atataaaaag gagaagaaga ttcaagagta      1500
     caagtccctt gaccgcctta cataccagga ggcccgccga aaatttgagc gtctgcaccc      1560
     tgtgcaacta tctactagtt atgcctcggt tacatccttt acacctcccc cttcctcatc      1620
     ccattcccac cctattcttc cccctccccc tcctgcacca cccttgcccc cctcccagcg      1680
     tcccccttcc tcctcccagc cggagaagtg ctccccttct ctggcacttg ccggtgaagg      1740
     tgccccctcc cagggttcct cttcccggcg tccaccagat aggaggtcct ctgcctcaag      1800
     ccggcagccg gacatccagg ctgataatac caaggtcgcc cggtcctcat cggtgccaga      1860
     ccttactgac tccagttctc tctctggaac ctgtccttcc cgtcctgcaa gagagaaaga      1920
     gaaggagaag aggaaaaaga agcaaaagtc gcaggacaag gcccctccgg tagtcctgga      1980
     ggcaccacct ttgtcctcac agccaaataa ccccactgaa cttgtgtctg atccgctgtt      2040
     tatggatgtc gttcctccct cgtcggtgac ggacgttgac ccagctttgt gacatgcatc      2100
     agtccgttcg ccttccatat ggatcctcga tctgttctca tccaatggaa ctgtaacggc      2160
     tactaccgtc gcctcctgga gttgaaacat cttattgcct cttactcagc agcttgtgtt      2220
     gttttgcagg aatcgcattt cactgatggc cattcaccaa cactccgtgg gttccgtgct      2280
     ttctgtcgga accgtgttcg ccccctacaa gcatctggtg gagtctgcac cctagttcgt      2340
     acggacgttg ttagttcatg gatccctctc cgtaccacac tggaagtggt tgctgttagg      2400
     gtccacttac acactccatt aacaatttgt aatctgtatc tccctcctga caggccacct      2460
     acgtctgctg ccctcacagc actccttcag cagctccctc ctcccttcct cattcttggg      2520
     gacttcaatg cccatcatct ttcatggggc agtgcttata caactagtcg gggccgcctc      2580
     gtcgaccaat tcattgccga tcacgacctg tgcctcctca atgatggctc cccaacccat      2640
     tttagtgccg ctcacggcac cttttcctcc atagaccttt cactcacttc tccccccccc      2700
     cccttttccc tttctttcgc tggtcaccgc atgacgacct ttgcgacagt gaccactttc      2760
     cgttgattct ttcactcccc tcacattgga cgagggacag gatacctcgt tgggttttcc      2820
     gtcatgctga ttggcctttg tatacatcac aggtggtttt cacaccatcc ccatctgact      2880
     ctatagatga ggtcatcagt gatgtgtcta atgcgattac tcgagctgct agcattgctg      2940
     tcccccagtc gactggtcct cctcgtcgcc gcccagttcc gtggtggaac gcaaccattg      3000
     cttcggcgat tcgtgagcgc cgtcgagcct tgcaacatct taagcgccac ccgtcccgtg      3060
     ctgcccttgt caactttaaa cgccttcgtg ccaaggctcg ttatataatc aaacagagca      3120
     agcgggtgtg ctgggagcgt tttctctcct ccttgggatc ttctgtaccc ttgtcacggg      3180
     tgtgggctat gctccgctcc atccaaggtt gccagcggcc gtcttcaatc cctggccttg      3240
     ccttaccaga tggggtctgt actgatccat tggttatcgc agagcacctt gcggctcact      3300
     ttgcgaaggc atcggcgacg gcttcctacc cggtggcttt tcgtctcaag aaacaacagg      3360
     ctgaagcctc aaatttatgt ttcaccactc accgggagga accttataac aaacccttca      3420
     cggaatggga actacgtctg gccctttctt cttctcatga ttctgcacct gggcctgatt      3480
     ccatccataa tcaacttctc aaacatctca gccccccaca acggcaatat ctactccagg      3540
     tatttaacca catttggctc caaggggttt tcccctcgca gtggagggac agtatagtgg      3600
     tccctgttat taagcctggt aaggatccgt catccctgga cagttaccgg ccgattagcc      3660
     tgacaaatgt gccatgtaaa ctgctcgaac ggatggttgc ccgcagacta tgttgggtac      3720
     tcgagtcacg tggacttctg tcaccttatc agtgtgggtt ccgggagggc aggtctccta      3780
     tcgaccatct acttcgactg gaaacggcaa tcagaaaggc cttttcaaaa cgtcaacatc      3840
     ttgttgctgt tttctttgat ttacgtaagg catatgacac cgcttggcgt cgtcatattt      3900
     tatgtaccct ccatgactgg gcctacgagg ctccctacca atttttatca gtcagttttt      3960
     atcccgccgc atgttccgtg tgagggttgg ctcttccttc agctccccac agatccagga      4020
     gaacggcgtt ccacagggtt ctgtgttaag tgttacactc ttcttaatcg ccattaatgg      4080
     gttggtgagc tctgttgggt cgcttgtcac ccctgctttg tacgtagacg acttttgcat      4140
     atggtacagc tcccactcgg tagcctcggc tgaacgccag ctccaaggtg ccattcggcg      4200
     ggcttccaca tgggcgctct cacatggttt tcagttttcc ccttctaaaa cgcgagtaat      4260
     gcatttctgc cgtcgtacta cagtccaccc tgacccagaa ctcttcttgg gtactcaacg      4320
     cctagaagtt gtggcacagc accgtttctt gggcctcctt tttgataaaa aactgacttg      4380
     gctgccgcat attcggcagc tgaagataag ctgcatgcgg aaacttaatg ccctccgttt      4440
     cctagctcac tcctcctggg gtgcagatcg gacaacacta attcatatct accgggctct      4500
     gattcagtcc cgattagatt atgggtgcca ggtatatggc tcggcagctc cttctgccct      4560
     gaaactgttg gaccccgttc accattgtgg catccgcttg gctacgggtg ccttccggac      4620
     cagccctgta gacagtctcc ttgctgaagc gggaatcccc cctcttcaga ctaggcgcca      4680
     tcagcttttg gtgtcctatg ccattgccat tcgtaaattc cctggtcatc ccacatatca      4740
     cgttctcttt gagggcgacg gtcttagaac tcctgatact cgccctcggg tgggtttacc      4800
     tgttggattg cggctcgctt ccctttgtag ggacttcaac ctcccttccc ttgactgtat      4860
     gcgtcgtgct ataccgcgca cccctccttg gttggtgcct cggccgcaaa tccgactgga      4920
     tctctaccac gccccgaaag cttcagtctc ccccataatc ttccggcgtt tgttgcacac      4980
     tgtccttgaa gaatttcagg gtgccacgat tttctacact gatggctcta aatttgctgg      5040
     tcatacggga tatgcattta cgtctcccat tggtgtggaa tgccattctc tgccagaatc      5100
     gtgcagtgtg tttacggcag aactaacggc tattagtagg gcacttcatt ttatcaaaca      5160
     ggtagccctg gaccgtgttt taatctgttc tgactcaatg agcagcctgc aggccataga      5220
     ccgatgctac tcctcacatc ctttggtcat tgatattcac gatctcctcg ctgatcttcg      5280
     tcgcaccgct tgctccgttg cctttctctg ggtccccagt catgtgggta tcctaggaaa      5340
     tgaacaggct gaccagttgg ctagagtagc tgtaactccc tgccccttcc cctgggttat      5400
     cccgggcgca gatttgaggg tgcagatgag atcgctactc atacaggact ggaacaccaa      5460
     ctggcaggct actgctctgt ctaataaact acgctccatc aagtcgacca ctgcagcttg      5520
     gagttcttcc ttacgccctt ctcgaaggga atccactgtc ctttgccgtc tccgcatcgg      5580
     tcactccagg ctgacccatg gttttctttt gcgtaatgag cctcccccac attgtggttg      5640
     tggggcccta caatctgtgg ctcatatctt agtggaatgt ccgctcctct tggcgctccg      5700
     tgccaaatac ggaattccgc actcattgcc ctcggttttg gcgaatgatt cacggatagc      5760
     tgacagagtc cttggattta tccgtgaaag cggtttttac tctcggctat aagattttat      5820
     tgctgacgct tggacaggat gggtgggttt gtggccctcc ctgcgagcag cagggtttgg      5880
     agctctcccc tcccctcccc ctgacgactt ccatttctcc ttttaacttg gttttaattc      5940
     acgttgtttc ccccttttta catttttagg cttctcattt aggagcatac actgttctcc      6000
     tgtatctgct tgtcattaat taacggggat tctagatttg tcgcgacgtt ccttgcagaa      6060
     tcccgctttt tctattggtt ttagtcctgt tctacttgat tttaaccccc ttttagttcc      6120
     tctattttac tctcgtcacg gtcttagccg accacaccct ggcttgcact ccatacagag      6180
     gtcatgggac tgatgaccta gctgtttggt cccatccacc catcaaccaa ccaaccaac       6239
//
ID   Nimb-41_LMi repbase;    DNA;    INV; 5971 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   23-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5971
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 219-219 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1315..1887,1884..2651,2423..3235,2989..4824,
FT                 4437..5708)
FT                 /product="Nimb-41_LMi_1p"
FT                 /translation="MAPTVQPSSVGPKGHQTHSASLKVGGPSFIAPPVPWW
FT                 GGNTSPPPSGTQVPIPQPEKQQPSPAPLAREEKSVGMLPSPVSKSRLEDPS
FT                 RSLGDAHTTGRRASRSSSAPETSEKPSQWSKPKEQREDKQKKKRSKKKSLP
FT                 TALPPSVSQTSDSEDGLEMLASPEDLALTDLPESMDIDATSTKAAAKGDTE
FT                 AGINSMFMTLMASQYANSNILQWNCGGYFHRLAELRHLLCQFPVLCVALQE
FT                 TWFPVQRIPALRGYRGYYKNRAAYDRVSGGVCIYVLANVPSAPVPLHTALE
FT                 AVAVRIRAGQEITICSLYLPPDKAVSSAELAALVAQLPPLYLLLGDFNAHN
FT                 PLWGGTEITARGRDVEYLLAQLNICLLNNGAATHFSLAHGTYSAIDLSLAV
FT                 QAYFHTLLGGSMTTFVEATISLSCRSHSHHLQAACPDGHSVGQTGRLTPRL
FT                 LQQRSRHTLQLGPWHLLSHRSVPCSPSLLPHLTWRVHDDLCGSDHFPLLSL
FT                 PQSPPAGCLPRWSLRRANWPAYTSAATVTSPLPDDVDLAVDDVTRAIVSAA
FT                 EATVPKSSGLLHRKSVPWWTPEIAEAIRERRRALQRHRRHPSLEHLIAFKR
FT                 LRAQARRLIQQSKRDSWERYAATIGSRASPTXVWKQVRRLFGHRPLAGIPS
FT                 LHIRGTLSTDPAAIAQYMADIMLVARHLHLTVRTSAPSKSVLNSGSFPFTC
FT                 AARKNTMRHSVSGSLRVPAPFRASSTGRNPQSSHSGYSVHRPSCYRAVHGR
FT                 HYARSSASASYSADFRALKERVEQRQLSFHMRRQEKYNAPFSEWEFESALA
FT                 ACPDTSPGPDSVHSQFVRHLPAXFQQLLLALYNHLWVKGAFPSQWRDSIII
FT                 PVMKPGADPQVAESYRPISLTNVLCKIFEHMVSRRLMWILEDRGLLAPQQG
FT                 GFRHGRSAIDNLVSLESAIRTAFTRREHLVAVFFDLRKAYDTTWRHHILAT
FT                 LYDWGLRGPLPTFIKNFLSLRTFRVRVGTSLSTHHIQENGVPQGSVLSVPL
FT                 FLVAINGLAAAVGSSVCSSLFADDFCLYYSSASIGVTERRLQGAIRKAQSW
FT                 ASAHGFTFSASKTRVMHFCRRVVHPDPELYLADEQLHVAETHRFLGMLFDN
FT                 RLTWGPHLRQLKQKCWRHLNILRCLGHTAWGAGRQTLMHLFKALILSRLDY
FT                 GSQVYDSASPSALRILDPILHGGVRLAMGAFRTSPVPSLLAEAGIPPLRFR
FT                 RQQLLASYVAHVHATRLTIQIAGFCFQTPSFPLHNIDPDQVFQSRSGYVLS
FT                 FPHSSPYLYLPHSPANLISLLGPSLAYSSTCNCPAIQRRRFHHIHFINSFW
FT                 TSLARSVMQKSYTLMAPRSWHPSPEVSPATVVGFICRPRSCYTPHHPNRRL
FT                 LFPNTVLPSPQHRPRSGLPIAVRVRTLLSSLESLPLPPAFSCQSHIPPWSI
FT                 PRLQLHLQLSCDPKASVSPHTLHQQFLDILGTFRDAEVIYTDGSQVEGRVG
FT                 YAYVHGDHIEQCSLLPGCTVFTAELIAIIRALDHLRTCPRKSYVICSDSLS
FT                 GLQALDQCFPKHHLVRSIQDSVFSLGXSGRSVAFIWTPGHIGIPGNERADQ
FT                 LAKQAIASQRLDIGTPERDIRLGLHHKISMAWNSEWSTLSTPNKLCAIKPS
FT                 TAAWKTSLRPSRRDSVVLCCLRIGHTWLTHGHLLHREDPPNCRCGALLTVV
FT                 HILLDCPLLAALRQSFNLPSALPSLLADDASMVDRVLGFIRAAGFYHMFNG
FT                 GYLTFRRPPLNSFNLLFLLSCQSYFQLAALVCTG"
XX
SQ   Sequence 5971 BP; 1294 A; 1728 C; 1441 G; 1501 T; 7 other;
     catgggctca gcattaattg ctgagtatgg gcttggcgaa cccggggtcc tgagctgtgg        60
     gctgtgtcgc gccagcagtc tgctacaccg taagctctgt gcgtgcttca acgaccatcg       120
     ttcggcgcga cggtggaatg ttgtacgttt cagagcccgg ggatcttggc ttaatcgccc       180
     aggtcgcgag gacagtasaa acctctatta aaaaaaacct caatctcaag gtgtgctacg       240
     tgccgaggag atgcatggct gttgaggttg aacagtcgct aggagaactc tgaggaacct       300
     gccgcacctc agttgtataa ggcttaccca ggcaagcggg gctctgcctg ggtggacctt       360
     tatatcccta gctgctcgtg ggaccaagat gaaacgagct ataaactatg ccaatggcgt       420
     ctctaagcga ggaagatcaa atttcaatgc cacgaaatat gacccccgat cgttcccttc       480
     ccttggtaca tcacgggagg aacatcgggc taaagatagg gatgagttat actctccaaa       540
     atatctcata tgcagcagaa cagacgggga magtttcatg acgacaaaac ctcttttctt       600
     cgtagaaaat ctggaggata agtatggtga agtcgcggga atgtcaaaga tgaggagtgg       660
     ttcagtgctg atagaagctg catcatccac tcagtcgaaa gcattgcttg cttgcgacaa       720
     gctgggtgat gtccctgtaa gcataacacc ccacaaatca ctgaacatgg tccagggtct       780
     gatttaccac agagaccttc ttctacagtc tgatgacgag ttacgcacca acttagagcg       840
     acggggcatc cacttcgtcc ggcgcgtgta taggggtctg aaggattgta gggttgccac       900
     cggtgctttc atcttggcct ttgagggcga tacattgccc gaaaaggtca aggtcatgat       960
     ttaccggtgt gacgtaaagc cttacatccc tccccctatg tgatgcttca aatgttggaa      1020
     atttgggcat atgtcatccc gctgcamctc tagccccaca tgtagggaat gcgggtgtcc      1080
     atcccatccg gacgctccgt gtactccccc gccaatatgt gtcaactgtg ggcagcacca      1140
     tccaccctgt tcaccagact gtaccattct ccgcaaagag tgtaaaatca tggaaattaa      1200
     gaccctggac agactgacat acactgaggc aaggaaaaaa tatgaaagac tccacccagt      1260
     ccgcagacaa cttcctatgc gacagttacg tcgtcgccag ccaccctggc gacgatggca      1320
     ccaacagtgc aaccatcttc tgtgggccct aagggccatc aaactcactc tgcctccttg      1380
     aaggttgggg ggccttcatt cattgcccca ccagtaccat ggtggggggg caacacttca      1440
     cccccaccat cggggacaca agtccccatt ccccagccgg agaagcagca gccttccccg      1500
     gcccctctcg ctagggagga gaagtccgtt gggatgctcc cttccccagt ttcgaagagt      1560
     agactggagg acccaagccg ttcactggga gatgcacaca ccactggtcg aagggcttcc      1620
     cgatcctcat cggctcctga aacttcagag aagccctccc agtggtctaa accaaaagaa      1680
     cagcgggagg acaagcaaaa gaaaaagaga tctaagaaaa aatcgcttcc aacggcactc      1740
     ccaccgtcgg tctctcaaac ttctgattct gaggatgggt tggagatgct agcgtcccct      1800
     gaggacctag cactcaccga cctcccagaa tcgatggata ttgatgccac aagtactaag      1860
     gcggcggcaa aaggtgatac tgaggcataa actcaatgtt catgacgctc atggcatccc      1920
     agtacgccaa cagcaatatc cttcagtgga actgcggtgg ttatttccac cgtctagctg      1980
     aattgcgcca tttattgtgc caattccctg ttctctgtgt agccctccag gaaacttggt      2040
     ttcctgttca gcggatccct gcccttcgtg gttaccgggg ctattataaa aatcgtgcag      2100
     cctacgacag ggtttccgga ggtgtttgca tctatgtcct cgccaatgtc cccagtgcac      2160
     cagtgccact tcacactgca cttgaggcag tggctgtgag gattcgggca ggacaggaga      2220
     tcactatctg ctctctgtac cttcctccgg acaaggcagt gtcttctgcg gaactagctg      2280
     ccttggttgc tcaacttccc ccgctgtacc tcctgttggg ggactttaat gcccacaacc      2340
     ccttgtgggg tggaactgag attacggccc gtggtagaga cgtggagtac cttctggcac      2400
     agctaaatat ttgccttctt aacaacggag ccgccacaca cttcagcttg gcccatggca      2460
     cctactcagc catagatctg tcccttgcag tccaagctta cttccacacc ttacttggag      2520
     ggtccatgac gacctttgtg gaagcgacca tttccctctc ctgtcgctcc cacagtcacc      2580
     acctgcaggc tgcctgcccc gatggtcact ccgtcgggca aactggccgg cttacacctc      2640
     ggctgctaca gtaacatctc cgctcccaga cgacgtcgat ttggctgttg atgatgtcac      2700
     tagggccatt gtttccgctg ctgaagctac agtcccgaaa tcctctggtt tgctccatcg      2760
     taagtcggtg ccctggtgga caccggaaat tgctgaggcc atcagggagc gtcgtcgggc      2820
     gctccagcgc catcgccgcc atccttcttt ggagcacctg attgctttta aacggctccg      2880
     tgcccaagct cgtcggctga tacaacaaag caagcgggat agctgggaga ggtatgcagc      2940
     cactattggc tctcgggcct ccccaactsa ggtgtggaag caggttaggc gccttttcgg      3000
     gcatcgtcca ctggcaggaa tccccagtct tcacattcgg ggtactctgt ccacagaccc      3060
     agctgctatc gcgcagtaca tggcagacat tatgctcgta gctcggcatc tgcatcttac      3120
     agtgcggact tccgcgccct caaagagcgt gttgaacagc ggcagctttc ctttcacatg      3180
     cgccgccagg aaaaatacaa tgcgccattc agtgagtggg agtttgagag tgccctagct      3240
     gcatgtcctg acacctcccc aggaccagac agtgttcaca gccagttcgt tcgtcacctc      3300
     cctgcggmtt ttcaacaact acttctcgcc ctgtacaacc atctctgggt gaaaggtgct      3360
     ttcccgtccc aatggcggga tagcatcatt atcccggtga tgaaacctgg tgccgatccg      3420
     caggtggccg agagctaccg cccaataagc ctcaccaacg ttctgtgcaa gatcttcgaa      3480
     catatggtga gtcggcggct catgtggatt cttgaagacc ggggactcct cgctccccaa      3540
     caagggggct tccgccatgg ccgctctgca atagataatc tagtgtcatt ggagtcggct      3600
     atccgcactg ctttcaccag gcgtgagcac ttggttgcgg tcttcttcga tcttcgcaag      3660
     gcgtacgata ccacctggcg ccaccatata ctggctacgc tgtatgactg gggcttacgt      3720
     ggtcccctac cgacgttcat aaagaacttc ctctcactcc gtacttttcg ggttagggtc      3780
     ggtacctctc tcagcactca tcacatccaa gagaacggtg tcccccaggg ctccgttctc      3840
     agtgtacctc tatttttagt tgccataaac ggccttgcag cggctgtagg gtcatcggtc      3900
     tgttcstcct tgtttgccga tgacttttgt ttatattaca gttctgctag cattggtgtc      3960
     actgaaaggc gtctgcaagg agccattcga aaggcacaat catgggcctc agcgcatggc      4020
     ttcacattct cagcatccaa aacccgagtg atgcactttt gtcgtcgggt cgttcaccct      4080
     gacccagaac tctaccttgc tgacgaacag cttcatgtcg cagaaacgca tcggtttctc      4140
     ggcatgctgt ttgacaaccg actgacttgg gggccacacc ttcgtcagtt gaagcaaaag      4200
     tgctggcggc atctaaatat actgcgctgt ctcggccaca ctgcctgggg agctggccgt      4260
     caaactctca tgcacctctt taaggcccta atattatcac gcctggatta tgggagccag      4320
     gtgtatgact ctgcgtcacc ttcagcattg cggatcttgg atcccattct tcatggtggt      4380
     gttcgtctcg caatgggggc tttccgcacc agccctgtgc caagcctcct cgctgaagct      4440
     ggcatccctc ccctgaggtt tcgccggcaa cagttgttgg cttcatatgt cgcccacgtt      4500
     catgctacac gcctcaccat ccaaatcgca ggcttttgtt tccaaacacc gtccttccct      4560
     ctccacaaca tcgacccaga tcaggtcttc caatcgcggt ccgggtacgt actctccttt      4620
     cctcactcga gtccctacct ctacctcccg cattctcctg ccaatctcat atccctcctt      4680
     ggtccatccc tcgcctacag ctccacctgc aattgtcctg cgatccaaag gcgtcggttt      4740
     caccacatac acttcatcaa cagtttctgg acatccttgg cacgttccgt gatgcagaag      4800
     tcatatacac tgatggctcc caggtagaag gcagagtggg ttacgcctat gttcatggcg      4860
     accacattga acaatgctcc ctgcttcctg ggtgtaccgt ctttacggca gagctgatcg      4920
     ccataattcg tgctctagac cacctccgta catgccccag gaagtcatat gtcatctgca      4980
     gtgactccct gagtggcttg caagctctcg accagtgttt ccccaaacac catctggtgc      5040
     gatccatcca agactctgtg ttcagtcttg gcawgtctgg ccgttctgtg gctttcatct      5100
     ggaccccagg ccacatcggc attccaggga atgaacgagc tgatcagctg gccaagcagg      5160
     ccatcgcctc ccagcgtctg gatatcggta ccccagaaag ggacatccgc ttgggtctgc      5220
     accacaagat ctccatggcc tggaactcag aatggtcgac attgagcacg cccaataagc      5280
     tctgtgcgat caaaccttcg acagcagctt ggaagacttc tcttaggcct tctcgaaggg      5340
     actcggtcgt cctctgttgc ctgcgtatag gccatacatg gctcacacac ggccacctct      5400
     tacatcgaga ggacccgcca aactgccgtt gtggcgctct gttgactgtg gtccacatct      5460
     tgttggactg tccactttta gctgctttgc ggcagtcatt taacctgcct tctgcgcttc      5520
     cttcgctttt agctgatgac gcctctatgg ttgaccgtgt tttaggtttt attcgcgcag      5580
     ctggttttta tcatatgttt aatggtgggt acctaacttt caggcgccca ccactaaaca      5640
     gttttaatct gttgttcctt ttgtcttgcc agtcctattt ccaactggca gctttagtgt      5700
     gtacaggatg actggctcat ccattattat cctagtgatc agccagccac atcttctgct      5760
     gtgattttta gcacagttga ctatttggtc cactactttt gtggtttccc ttttcctttt      5820
     atatgtcatt tagcacacac tgccttcctg tacttctcgt gtactggctg tggagtgctt      5880
     cgtcttcaac tgtaaatcac atgtgtgatc tctttgctgg gaacagggga ctgataaccc      5940
     agccgtttag tcccctttaa aaacaacaac a                                     5971
//
ID   Nimb-42_LMi repbase;    DNA;    INV; 5753 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5753
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 220-220 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(401..1612,1631..2149,2214..2636,2533..4059,
FT                 3972..5369)
FT                 /product="Nimb-42_LMi_1p"
FT                 /translation="MKRAINSIGARKNAVSKRGRTDYNAAXYNPQSFPSLA
FT                 TPWEERRAHNRSEPYTPQYLVCARVDGESFMNTKPQFFVENIEDKFGEVTS
FT                 FSKMRSGSVLIQTASPAQSKALLACEKLGDVAVSITPHKTLNMVQGLIYHR
FT                 DLLSQSDDELRANLQRRGVHFVRRVYRGPKDQRVATGAFILAFEGDTLPEK
FT                 VKVMIYRCDVKPYVPPPMRCFKCWKFGHMSSRCTSSPTCRECGRPSHPDAP
FT                 CTPPPVCVNCGQYHPPCSPVCSALHKERKIMEIKTLDKLTYSEARRKYERL
FT                 HPVRMTTSFATVASSPVSLGTTAPQVQPPAVGPMGRKSQTAPLMGGGPSSS
FT                 TAPPTPVGAIPPPPLGTPVPTPQLEKEQPPEGVPGLQSHNLSLLLQKMRWR
FT                 STRLPRICPHTCWLDILAKVIQKLNLYRLYHGLSANKQNEILQWNCGGFFH
FT                 HLAELQQLLCQFPVICLALPADRTPALRGYRGYYRNRTGYNWVSGGVCIYV
FT                 LATVPSAAVTLQTTLEAVAVRIRTTQELTICSIYLPPDEAVSQTDIAALVA
FT                 QLPPPFLLLGILMPTTLCGEGHTPQVMVGTCGAWHIFGHDCLFVAPAFSRM
FT                 LTGGSMMTYVAATISPFFCRSHSLSQQTACPDGPSAELTGHLTPHLLCFRI
FT                 SFLLMLMLRLVRLLLPYFPPLKPPSRARLGHYGVSPCRGGCQRLPRPSRSP
FT                 ESASAPSVPPFCRASDRFVRAVVDARDCRGHRDRRRVLQRHRCHPSAEHLI
FT                 AFKRLRARARRLIQQSKQDSWERYVATIGSRASPSRVWSQVRRIYGYRLSA
FT                 GIHCLRIQGTLCTNPSTIAEHMAEHYKRSSATAAYSADFWAIKQRVEQKPL
FT                 SFCTRRQESYNAPFSDWEFHSALTACPDTSPGPDRIHSQFLSHLSADCKHK
FT                 LLALLNRLWADGVFPSQWRDSVIVPVIKPGADPLAVDSYRPISLTNVLSKL
FT                 FERMVSRRLMWILEHWGLLAPQQGGFRQGRSTIDNLVALESAIRTAFTQRE
FT                 HLVAVFFDLRKAYDTTWRHHILATLYDWGLRGSLPIFIQNFLSRRTFRVRV
FT                 GASLSPPHVQENGVPQGSVLSVPLFLIAINGLASAVGSSVSSSLFADDFCV
FT                 YFRSASIGVAERHLQGAIRKAQSWALAHGFQFSAAKTRVMHFCRCRAAHPE
FT                 PELYLSDDLLRVEKTHRFLGMLFDDRLTWVPHIRQLKRKCQRYLNILRHLS
FT                 HTVWGLAVQPLCSSIRHVPALPKYSPPSQPHCLGASRSTLMQLYKALVQSR
FT                 LDYGSSVYGSAAPSALRILDPILHGGVRLATGAFRTSPTSSLLAEAGIPPL
FT                 EFRRRQLLLSYVAHVHALPHHXNRGLLFPAAAPPIPPRRPRSGFPIAVRVR
FT                 TLLSSLESLPLPPAFSYQPHTPPWSVPRPQLHLELSRDAKALVSPQTLRRQ
FT                 FLAILDAFQGADVLYTDGSSVDGRVGYAFTHGEHIEKRSLPPGCSVFTAEL
FT                 VAISHALDHLKGCPRKSFVICSDSLSGLQALDQCFPTHPVVRSIQSSIFTL
FT                 TTSGSSVAFVWTPGHVGIPGNEQVDRLAKQATTSRPLDIGIPERDIKLGLC
FT                 RKVFAAWESEWSTLSMPNKLRVIKPSTAAWKSSLRASRRESVVLCRLRIGH
FT                 TWLTHGYLLRGENPPECRCGALMTVIHLLLDCPLLAALRQSFKLPAALPLL
FT                 LRDDASMADSVLDFIRAAGFYHSI"
XX
SQ   Sequence 5753 BP; 1160 A; 1702 C; 1404 G; 1482 T; 5 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcccgag        60
     ctgtgggctg tgtcgcgcca acagtccgcc acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttca gcgcgacaat ggtggaacgt tgtacgtttc agagcccagg gatcttggct       180
     taatcgcccg ggtcgcgagg acggtacaaa cctctataaa aaaaaaactc aatctcaagg       240
     tgtgctacgt gccgaggaga tgcatggctg ttgaggttga acagtcgcta gcgagcaacc       300
     tctggggaac ctgccgcacc tcagttgtat aaggcttacc caggcaagcg gggctctgcc       360
     tgggtggacc tttagatccc tagctgctcg tgggacgaaa atgaaacgag caattaatag       420
     catcggcgca cgcaaaaatg ccgtctcaaa gcgtggaaga actgactaca atgctgcacm       480
     gtataacccc cagtcgttcc cttcccttgc caccccttgg gaggaacgta gggcccacaa       540
     tagatctgag ccatacacgc cccaatacct ggtttgtgca cgtgtcgatg gggagtcttt       600
     catgaataca aagccacagt tctttgtgga gaacattgag gataagtttg gtgaggttac       660
     ttcattttcc aaaatgagaa gcgggtccgt cctgatacaa acggcatcac cagctcagtc       720
     aaaggctctc cttgcctgtg aaaagctggg tgatgttgcc gttagtatca cgccccataa       780
     aactctcaac atggtccagg gtctaattta ccacagagac ttactatcac agtccgacga       840
     cgagcttcgc gccaacctcc agcgacgagg tgttcacttc gtccggcgcg tttatagggg       900
     tccaaaagat caaagggttg ccaccggtgc ttttatcttg gccttcgaag gtgatacact       960
     gcctgagaag gtcaaggtaa tgatataccg gtgcgatgtg aaaccgtatg tccctccccc      1020
     tatgaggtgt ttcaagtgct ggaagttcgg gcatatgtcc tcccgatgta cttccagccc      1080
     cacatgtcgg gaatgcgggc ggccatccca cccggacgct ccatgcaccc cacctcctgt      1140
     gtgtgtgaac tgtgggcagt accatccacc ttgctcgcca gtctgttctg ctttacataa      1200
     ggagcgwaaa ataatggaaa taaagaccct ggacaagttg acttactctg aggcaagaag      1260
     gaaatacgag cgactccacc ccgttcgtat gacaacatca tttgcaactg ttgcatcgtc      1320
     acccgtctcc ttggggacga ccgctcccca agtgcaacct cccgctgtgg gccctatggg      1380
     ccgtaaatct caaactgccc ccttgatggg tgggggccct tcttcatcca ctgctccccc      1440
     aacacctgtg ggagcaattc ccccaccacc actggggaca ccggtcccca ccccccagct      1500
     ggagaaggaa cagcccccgg aaggggtccc tggtcttcaa agccacaatc tctctcttct      1560
     acttcagaag atgaggtgga gatccacgcg tctgccgagg atctgccctc actagaaccg      1620
     atggttctag acctgttggc tggacatctt ggcgaaggtg atccagaaat taaatcttta      1680
     tcgcctttat catggccttt cagcaaacaa acaaaacgaa attctccagt ggaattgtgg      1740
     aggctttttc caccatctgg ctgagttaca acaattattg tgccaattcc ctgtgatctg      1800
     tttagccctc cctgctgacc ggaccccagc ccttcgtggc tatcggggct actatagaaa      1860
     ccggactggc tacaactggg tgtctggtgg tgtttgtatt tatgtactcg ccactgtccc      1920
     cagtgctgcc gtgactctcc aaacaactct cgaagcagtg gctgttcgca tacggacaac      1980
     tcaggaactc acaatatgtt ccatctacct tccgccagat gaggctgtgt ctcagacaga      2040
     tattgctgcc ttagtcgccc agcttcctcc accattcctc cttttgggga ttttaatgcc      2100
     caccaccctt tgtggggagg gacatacacc acaggtcatg gtagggacat agaggccctt      2160
     ttggcacaac atgatatctg ccttttgaac aatggtgccc ccacgcattt tagtgtggcg      2220
     cgtggcacat attcggccat gactgtctct ttgtagcccc agccttctcc cgcatgttaa      2280
     ctggagggtc catgatgacc tatgtggcag cgaccatttc cccatttttc tgtcgctccc      2340
     acagtctcag ccagcagacc gcctgccccg atggtccctc cgccgagctg actggccatc      2400
     ttacacctca tctgctgtgc ttccggatca gtttcctgtt gatgttgatg ttgcggttgg      2460
     tgaggttact gctgccatac tttccgccgc tgaagccacc gtcccgtgca cgcctgggcc      2520
     actacggcgt aagtccgtgc cgtggtggat gccagagatt gccgaggcca tcgagatcgc      2580
     cggagagtgc ttcagcgcca tcggtgccac ccttctgcag agcatctgat cgcttttaag      2640
     cgtctccggg cccgagcacg acggctgatt caacagagca agcaggactc atgggagagg      2700
     tatgttgcca ccattggttc tcgtgcctct ccctctcggg tgtggtccca agttcggcgc      2760
     atttatgggt accgtctgtc ggcgggcatt cactgtctcc gcatccaggg tactctctgt      2820
     accaacccat ccaccatcgc tgagcacatg gcggaacact ataaacgcag ctctgcgacg      2880
     gcagcttaca gtgccgactt ttgggccata aaacagcgag tcgagcaaaa gccattgtca      2940
     ttttgcacgc gtcgccagga gtcgtataat gctcccttta gtgactggga gttccacagt      3000
     gccctcactg catgccctga tacatcgcct ggacctgacc gaattcatag ccagttcctc      3060
     agccatctgt cagcggactg caaacataaa ctgctcgccc tgttaaatcg tctatgggcc      3120
     gacggcgtct tcccatccca gtggcgggat agtgtcatcg tcccggtgat aaaaccaggt      3180
     gccgatccgc tggcggtcga tagttaccgc ccaatcagcc ttactaatgt tctgagtaag      3240
     ctgtttgaac ggatggtgag tcggcgactc atgtggatcc ttgaacactg gggcctcctg      3300
     gccccacagc aggggggctt ccgtcaaggc cgctccacta tagacaacct agtggctctg      3360
     gagtctgcca tccgtaccgc ttttactcag cgtgagcacc ttgttgcggt cttttttgac      3420
     ctccgcaagg cctatgacac cacctggcgc catcacatcc tcgcaacact gtacgattgg      3480
     ggcttacggg gttcactccc gatcttcata caaaatttcc tttcgcgccg cacttttcgg      3540
     gtccgggttg gtgcatctct tagcccaccc catgtgcagg agaacggtgt cccacagggc      3600
     tctgtcctta gtgtacccct gtttttaata gctattaacg gtcttgcttc ggcggtgggg      3660
     tcttctgttt catcttcctt gtttgctgac gacttctgtg tgtattttcg atctgccagc      3720
     attggtgtcg ctgaaaggca tctgcaggga gccatccgaa aggcgcagtc ctgggcccta      3780
     gcccatgggt tccagttctc tgcagccaaa accagggtca tgcacttctg tcgttgtcgg      3840
     gccgcacacc cggaacccga attgtactta agtgacgatt tgcttcgtgt tgaaaagacg      3900
     caccgctttc tgggcatgct ctttgatgac cggctcactt gggtgccaca catccgacag      3960
     ctgaagcgta agtgccagcg ctacctaaat attctccgcc atctcagcca cactgtttgg      4020
     gggctagccg ttcaaccctt atgcagctct ataaggcact agtgcagtca cggctcgact      4080
     acgggagctc ggtttatggt tctgcagctc cctcagcatt gcggattctt gatcccatcc      4140
     ttcacggtgg ggtccgtctc gcaacggggg ctttccgcac aagccctaca tcaagcctcc      4200
     ttgctgaagc tgggatccct cccttggagt ttcgccgccg acaactgctt ctctcatacg      4260
     tggcccatgt ccatgccttg ccacaccacs caaatcgcgg gctgctcttt ccagctgctg      4320
     cacctcccat accacctcgc cggcccaggt cgggttttcc gatcgcggtc cgggttcgta      4380
     ccctcctttc ctccctcgag tccctccctc tccctcctgc tttctcctac caaccccata      4440
     cacccccttg gtctgtcccc cgcccgcagc tccacctgga attgtctcgc gatgcaaagg      4500
     cattggtttc accacaaact ctccgtcgcc agttcctagc cattcttgat gcattccaag      4560
     gtgctgacgt cctctacact gatggctcct cagtagatgg ccgagttggg tatgccttta      4620
     cacacggaga acacattgaa aaacgctcct tgcctcctgg ttgtagcgtt tttacggcgg      4680
     aactggtcgc gatatcacat gctcttgacc accttaaagg gtgccccagg aagtcgtttg      4740
     tcatctgcag cgactccctg agtggcctac aagcccttga ccagtgtttc cctacccatc      4800
     ctgtggtgcg atcgatacaa agctccatct tcacgctcac aacttctggc agttcagtag      4860
     ccttcgtgtg gaccccgggc catgttggca tcccgggtaa tgagcaggtc gatcgactgg      4920
     ccaagcaggc taccacgtcc cggcccctcg atattggtat cccagagagg gatatcaaat      4980
     tggggttatg ccgcaaggtc tttgctgcct gggagtcaga gtggtctact ttgagcatgc      5040
     ccaacaagct ccgtgtgata aagccctcta cagcggcatg gaagtcctcc ctgcgggcct      5100
     ctcgcaggga gtccgtcgtc ctttgtcgcc tgcgtatcgg ccatacctgg ctaacgcatg      5160
     gctacctcct tcgtggagag aacccaccag agtgccgctg tggcgctctt atgacagtga      5220
     tccacctttt gttggattgt ccacttttag ccgccctccg gcagtctttt aagctgcctg      5280
     ctgcactacc tttacttctt agagacgatg cctctatggc tgacagtgtt ttagatttta      5340
     ttcgtgcagc tgggttttac cattctattt aggggtggat actttcacat gaagtgacag      5400
     gtctccacct ctccaccact tttaagtcct tttccgactt tcatgtckat tgwctagcaa      5460
     ttttagtgtg tgcaggatgg ctggctcatc ctctattatt tttgtgatca gccagccatg      5520
     ttatcctgct ttcaagtttt cgttcagttt gtgactcggt ttcctctttc tgtgtgtcct      5580
     tcctttgcgt gttggcaaca tgttcaatgt agctctgcac attttatggc tttttccctc      5640
     taggtgttct ttgttttttc acctttgatt gttaatgctt tgcttggaac aggggactga      5700
     tgaccgagct gtttagtccc ctctaactcc tcacaacaac aacaacaaca aca             5753
//
ID   Nimb-4B_RPr repbase;    DNA;    INV; 5147 BP.
XX
AC   .
XX
DT   11-MAR-2013 (Rel. 20.10, Created)
DT   11-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-4B_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5147
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3481-3481 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to the consensus. 3' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           291..2348
FT                 /product="Nimb-4B_RPr_1p"
FT                 /translation="ISLPRVPWRGFGARVEKRILGIEGDVDLRASYPNTCL
FT                 RPRLHPRAPPGGYPYFRKSAREHCLRQVPRGRKGVAGARVGTWYRNVVFRG
FT                 TGLYWGVMIHPDSNRIQLSVRGGGITCSDESSLIIMDNQSTFFGPSPPTTS
FT                 LHPTNPNPFLLPTSSQILTVPTTNNLQLPNPQPPTMDTNGGKLGMDMDTDL
FT                 GISTTREQITLQPYSPSSPPRKKAKGGHRKVSESGFKFINLDEDNWGRFFV
FT                 LKKKEGTFSNECSFKLHKFIKSTLGKTKSIRKLNDGSICIEADNRNQVRAI
FT                 LNLQKYMDTELEAGPHKRLNTSQGVITCRDFLNSSIEDIKEGLADQGVIEV
FT                 RRIKRRQEGSLVDTASLVLTFDRPQPPQMVDAAFYKLKVRPYIPSPMRCFK
FT                 CQKFGHTAMRCKAAEPVCICGKSIHEGDCTPPITCVNCGGEHTARSSGCPT
FT                 LAREKEIQKIKTLQNLPYLEARAIVESKSYATKEISYAEKMRAPLPVPHSI
FT                 VAPAKTRIDQINGPSSALKDSIIKVGEIPPPQRLSPFVGRDSSKVGVIPPP
FT                 IQNAPLGVLVVERPPENIPATSGSDLKVGSRPPEKMNPSDGEWKVVNPPKR
FT                 SPKKKTAKHSLPPPLKTRGKTKTLEQQASSQLVVSLPKQQRELIETDMDAS
FT                 ESEGGESTSSLLPRRKKKGLPRGKTGDDCGTDYESAK"
FT   CDS           2504..5146
FT                 /product="Nimb-4B_RPr_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="MCESILQWNMRGFKNNMEGLRRIVGEHRPFGLCLQET
FT                 KIRPGQIIRIPGYTVYSKEVQPAPGGRAHGGVAVCVRENISSRRLPLQTNL
FT                 QAVAVRLATPLQVTLVSIYLPDIYWRRGDLENLLSQLPAPVLLMGDFNCHS
FT                 TWWGSVRTDARGRALEEIIDNANLMLLNSGEVTHFNAHSGGFSAIDLSVAT
FT                 PTIAIRLEWTTLEELYHSDHFPILVASSISRSEYVMPWRYDIKRANWSAYA
FT                 AKVLIPPLTGDVNLDTNLFTKGLTLAAGSTIPRVGGKVTRPPVPWWTSECR
FT                 AANAAKKRALNRFKRHPTEGNLINFKRLRARERRIIRXEKKETLTSYLSKI
FT                 SSTSTLKEVWSKIRALSGGRKTPSIPVLKINDVVVTEAEEVAEALARHFSQ
FT                 VSGSGSYSAEFLRRKGDVEQQPLDFDAAINETYNEPLTIHELDNALQKCKD
FT                 SAPGVDGIPYAMIRNMDINGKVGLLQLYNSIWDTGQYPDGWRDAIIIPIPK
FT                 EGKDPSNPSSYRPISLTTCLSKVLESIINYRLVYLLETRGLYSQFQAGFRR
FT                 YRSTLDQMSRLEIYVQNAFMRREHVLAVFFDLEKAYDTTWRYAILRKCHEW
FT                 GLRGRLPRFLRSFLELRRFRVRLGSVLSDPHELQNGIPQGSVLSVTLFTIA
FT                 VNSLAEVVGDPLQVSLYVDDLAIYLSGSDIDEVGETLQQAVERVAEEASRN
FT                 GFKFSKTKTVCLHFCRLRRNCNPPTLVLDGTPIRCKESVRFLGLVFDSRLT
FT                 WQDHIDYISTKARRTLDLLKFLGRYKWGTEREILKSIFISLTRSKLEYGAP
FT                 VYSSARKSRLKLLDRIYNEGIRLFTGAFRTSPLQSLYVESGMHPPQLRREQ
FT                 LTLTYIAGIWGKRFHTLFPTIFESPHED"
XX
SQ   Sequence 5147 BP; 1505 A; 1194 C; 1215 G; 1230 T; 3 other;
     ccccgtaggg ggaagtggac tagccacttc ttcagggagc ttggcgtccc tgcgggtatc        60
     ccagtctaac aacatttcaa cacttacact aacacccctt aacactcaca cactacactt       120
     agggcctgca gaggtagttg atgtgtgcag ctacttgggt ttagcgaacc cacaggtaaa       180
     ctcgagctcc ccaccacaca cactcattta cacctaaaca ctcacacttt acagacgact       240
     acacacactg cacgaacaag gacacgcact cgtcgagagt cagagtataa atatctctcc       300
     ctcgcgtgcc gtggcgaggc tttggggcta gggtggaaaa gaggatcctg ggcattgagg       360
     gagacgtcga cctgcgggct tcttatccca acacatgtct tcggcctcgg cttcacccga       420
     gagctccacc tggaggatac ccctacttca ggaaatcggc tagggaacac tgtctcagac       480
     aggttcctag gggtaggaag ggggtcgcgg gggcacgggt cggtacctgg taccggaacg       540
     ttgtcttccg cggcaccggt ctatattggg gtgtgatgat ccatccggat agtaaccgga       600
     tccaattgag cgtccgtgga ggcgggatca cgtgctctga tgaatcttcg ttgattatta       660
     tggataatca atcaaccttt ttcgggccta gcccaccaac tacctccctt caccccacga       720
     atcccaatcc tttcctctta cctacatcat cccaaatcct caccgttcct actaccaata       780
     atctccaact ccctaaccct caacccccta cgatggatac taacggcgga aaactcggca       840
     tggacatgga caccgattta ggaatatcga caactaggga gcagattaca ctgcaaccct       900
     atagcccttc ttccccgcca aggaagaaag ccaagggtgg ccacaggaag gtaagtgaat       960
     caggttttaa atttattaat ttagatgaag acaactgggg aagatttttt gttttgaaaa      1020
     agaaggaagg aacattttca aacgaatgtt cctttaagct tcataagttt attaaaagta      1080
     ctttgggtaa gactaagagt atcagaaaac ttaatgatgg ttcaatctgt attgaagcgg      1140
     ataatcgtaa ccaagttaga gctatcttaa acctacaaaa atatatggat accgaattgg      1200
     aagctggtcc ccataaacgt ttaaatactt cgcaaggagt gataacttgc agggactttc      1260
     tcaatagtag catagaggac ataaaagaag gactagccga ccaaggagtt atagaagtga      1320
     ggagaataaa gaggaggcaa gaagggtccc tagtggatac cgcctctttg gtcctcactt      1380
     tcgatcgtcc gcagccgccg caaatggtag atgcagcctt ctataaatta aaagtgcgcc      1440
     catacatacc ctcgccaatg aggtgcttta aatgtcaaaa gtttggtcac actgctatga      1500
     gatgtaaggc tgcagaaccg gtgtgcattt gtggtaaatc tattcatgaa ggagattgca      1560
     caccaccaat tacatgcgtg aactgtggcg gagaacatac tgccagatca tcggggtgcc      1620
     caactttagc aagagaaaaa gaaatacaaa aaataaagac tttgcaaaac ttgccctacc      1680
     ttgaagctag ggcaatagtg gaaagcaaat cgtatgcgac aaaagaaata tcctatgcag      1740
     aaaagatgag ggcgccccta ccagtgccac actcaatcgt agcccctgca aagacccgaa      1800
     tagatcaaat aaatggccct tcctcggcct taaaggattc tatcatcaag gtgggagaaa      1860
     tcccaccacc ccagaggctc tccccatttg tggggagaga ctcttcaaag gtgggagtaa      1920
     tcccaccacc aatccaaaac gccccgttag gggtgctggt ggttgaaaga ccaccagaaa      1980
     acattcccgc tactagcggg agtgacttaa aggtgggatc acgcccaccg gaaaaaatga      2040
     atccctctga tggggagtgg aaggtggtaa atccaccaaa acgctccccc aaaaagaaaa      2100
     cagcaaaaca ctctttgcca ccccctttaa agacaagggg gaaaactaaa acattagagc      2160
     aacaagcgtc ctctcagctt gttgttagcc ttccaaaaca gcaaagagaa ttgatagaga      2220
     cagacatgga tgcttcggaa tcggaaggtg gtgaaagcac ctcttccctc cttccaagaa      2280
     gaaagaaaaa gggtctgccc aggggtaaaa ctggggacga ttgtggcact gactacgagt      2340
     cagcaaaatg aagtatatag ctcttccaat tcggtattta tctacaaaat attttaacat      2400
     gtattatctt aagactttta tcaaatgtat tgttattctt gtaaatagtc tatccttagt      2460
     atatagaata ttcctgccag gtcaggctac taataatact taaatgtgtg agtccattct      2520
     tcaatggaac atgcggggtt tcaaaaacaa catggaaggt ttgcgcagaa ttgtaggaga      2580
     acaccgacca ttcgggttgt gcctccaaga aaccaagatt cgcccaggac aaatcatacg      2640
     aatccctggg tacactgttt acagtaaaga agtgcaacca gcccccggtg ggagggcgca      2700
     tggcggagtt gccgtctgtg taagggaaaa tatctccagc aggcggctac ctcttcaaac      2760
     taatttacaa gccgttgccg tgcgcctagc tacaccactg caggtcactt tagttagtat      2820
     ttacctacca gatatctatt ggcgaagagg tgacctggag aatctactct cgcaactccc      2880
     tgcaccggtg ctgctaatgg gtgactttaa ttgtcacagc acctggtggg gttccgtcag      2940
     aactgacgct agaggtagag ctcttgagga gattatagac aacgctaacc tgatgctcct      3000
     caacagtggt gaagtaactc attttaatgc acactcagga ggattcagtg caattgacct      3060
     gagtgtggca actcccacaa ttgcaattag acttgaatgg accacactag aagaattata      3120
     ccacagtgat cattttccaa tattagtagc aagctccatc tccaggtcag aatacgttat      3180
     gccctggaga tacgacatca aaagagcaaa ttggtctgct tatgctgcca aagtgttgat      3240
     accacccctt acaggggatg tcaaccttga tacaaatttg tttactaaag ggttgactct      3300
     tgcagctggc tccactattc ctagggtggg cgggaaggtc actagacccc ctgtcccctg      3360
     gtggacttcg gaatgtcggg cagctaatgc agcaaaaaag cgggccttaa acagattcaa      3420
     aaggcatccg acggagggaa atcttataaa cttcaaaaga ttaagagcca gggagaggcg      3480
     tataattaga makgaaaaaa aggaaaccct cacctcmtac ttgtcaaaaa tctcctcaac      3540
     atcgacgttg aaagaggtgt ggagtaagat aagagccctc tctggtggac gtaaaacccc      3600
     gtcgatacca gtcttaaaaa taaatgatgt cgtcgtcacc gaggcagagg aggtcgctga      3660
     ggccttggcc aggcattttt ctcaagtgtc tggctcgggg agctattcgg cggaattcct      3720
     ccggcgaaaa ggtgacgtgg agcaacagcc actcgatttt gatgccgcta tcaatgaaac      3780
     atacaatgaa ccgctaacca ttcacgaatt agacaatgcc ttacagaaat gtaaagactc      3840
     tgccccagga gtggatggga tcccatatgc aatgatcaga aatatggaca taaatgggaa      3900
     ggtaggcctt ctccaattgt ataacagcat atgggatacc ggccaatacc ctgatggttg      3960
     gcgggacgct attattatac cgatcccaaa ggaaggaaaa gaccctagta acccctccag      4020
     ttacagacct atttcgttga ccacctgctt aagtaaggtc cttgagtcta taattaatta      4080
     tagactagtg tatctgttag aaacgagagg actttacagc cagtttcagg cgggatttcg      4140
     cagatatcgt tccacgttgg atcagatgag ccgcctcgag atctatgtgc aaaacgcttt      4200
     tatgcgtaga gaacacgtgc tggccgtgtt cttcgatctc gagaaggcct atgatacgac      4260
     gtggagatac gcgattctgc ggaagtgtca cgagtgggga ctgagaggga gattgccgag      4320
     gttcctccgt agcttcttag aactgcgaag gttccgagtg cgactggggt cggtcctttc      4380
     ggacccacac gaactacaaa atggcatacc tcaggggtcg gtattgagcg ttacgttgtt      4440
     cacgatagcg gtaaacagcc ttgctgaagt tgtaggtgac ccactacaag tatccttata      4500
     tgttgacgac ctcgctattt atttatcagg tagtgatatc gatgaggtcg gggaaaccct      4560
     acagcaggct gtagagagag tggctgaaga ggcatctagg aacggattta aattttctaa      4620
     aactaagacc gtgtgccttc atttttgtcg cctaagacgg aactgcaatc ctccaacact      4680
     ggtactagat ggcacaccga tccgctgtaa agaaagtgtc cgtttcctgg gcctcgtatt      4740
     tgatagtagg ttgacctggc aggatcacat tgattacatt agcactaaag caaggagaac      4800
     cctcgattta ttgaagttcc ttggaagata caaatggggg acggagcggg aaatcttgaa      4860
     gagtattttt atttccttaa cccgttccaa gttagaatat ggagccccag tgtatagttc      4920
     tgcgcgcaag tctcgcctga aactattaga tagaatttac aacgaaggaa ttagattatt      4980
     cacaggcgcc ttccggacta gtcctttgca aagcctctat gtggagtcag ggatgcatcc      5040
     tcctcagctg aggagagaac agctcaccct gacctacatt gccggaatat ggggaaaacg      5100
     ttttcatact ttgtttccta ccatatttga gagcccacat gaagatg                    5147
//
ID   Nimb-4_BTa  repbase;    DNA;    INV; 1753 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-1753
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 729-729 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1610
FT                 /product="Nimb-4_BTa_1p"
FT                 /translation="NSKKYAKRKLNETLRNLEEWSEVTGFKFSAIKTKGII
FT                 FTRRYRIPSFKLFLNDAQIQFYPSVNFLGVIFDRKLNWSEHIVSLKNKCMS
FT                 RLRILQFLSHTSWGADKFTMLNLYRSLIRSKLDYACFIYGTASPSTLKTLD
FT                 AIHNTGIRISTGAFKSSPSSSLCIEAREPPLYYRRQLLLAKHLAKMKSFNT
FT                 FPETFKELLAFKNQLYLSVFRFTNFNDVLKFKKPIFPFWQTLPTENVLNVP
FT                 IIAKANLSQAEMRQNFFSVIDSHAEHKPFYTDGSKTVNSTACAFSCDLNEV
FT                 YSFKLSPVTSIFTAEALAISKALNYVHNTDCKQSIICSDSYSVLSALGNPN
FT                 NPHPILTQIQNLVFTLISKNFSILFCWCPGHVNIPGNVRVDSAARESSLSI
FT                 GPFSKGSVTSKDLFLDIKGKILHHWVTEWQHFTNAKCPPALPTSPSSENFH
FT                 LTRLQQVVQTRLRIGHTNFSHSYLMTQSNRPACTSCPNSPLTVDHVLISCP
FT                 LYKDIRKRFFPYPLPSLKNLLLNTHPVKLFEFMRSTNLKI"
XX
SQ   Sequence 1753 BP; 531 A; 381 C; 247 G; 594 T; 0 other;
     taaatagtaa aaaatatgcc aaaagaaaac taaatgaaac tctacgtaac ctcgaagaat        60
     ggtcagaagt tacgggtttc aaattttcag caattaaaac aaagggcatt atttttacca       120
     gaaggtatag aattcctagt tttaaattat tccttaatga tgcacaaatc cagttttacc       180
     cctctgttaa ttttctcggc gtgatttttg accgaaagtt aaattggtcc gagcacatag       240
     tttcccttaa aaataaatgt atgtctagat taagaatcct acaattttta tcacacacct       300
     cgtggggcgc tgataaattc actatgctca atctttatcg atctctgatt agatcaaaat       360
     tagattatgc ctgttttata tatgggactg ccagcccttc taccctcaaa actttagatg       420
     ccattcataa tacaggtatt cgaatttcaa caggtgcttt taagtcaagt ccatcatcta       480
     gtctatgtat agaagctcgt gagcctcccc tctattatag aagacaatta ctgctcgcaa       540
     aacacctcgc taagatgaaa tcgtttaata catttcctga aaccttcaaa gaattacttg       600
     cattcaaaaa ccaattgtat ctttctgttt tcaggtttac taattttaat gatgtgttaa       660
     aatttaaaaa acctattttc cctttttggc agacattacc tacggaaaat gttttaaatg       720
     ttccgattat tgcaaaagct aatttatctc aagctgaaat gagacagaac tttttctcag       780
     tcattgattc tcatgctgag cataagccat tctatacaga tggatctaag actgttaatt       840
     ctactgcatg tgctttcagt tgcgatctga acgaagtata ctcttttaaa ttatcaccag       900
     tcacatctat ttttacagct gaggctctag ctatctccaa agccttaaat tatgtccata       960
     atacagattg taaacaatca attatttgtt cagattcata tagtgtatta agtgctttag      1020
     gtaaccccaa taatcctcac ccaatcctta cccagatcca gaatctagtc ttcaccctta      1080
     tatctaaaaa tttctctatc ctgttttgtt ggtgcccagg acacgttaat attccgggta      1140
     atgttcgagt agattctgca gctagggagt ctagcctttc aattggcccc ttctcgaagg      1200
     gatcggttac ctctaaagat ctgtttctag atataaaagg aaaaattctc caccattggg      1260
     ttactgagtg gcagcatttc accaatgcta aatgcccccc tgcattgcct acttcacctt      1320
     catccgaaaa ctttcatttg actcgacttc aacaagtagt ccaaactaga ctgagaattg      1380
     gtcacacaaa tttttcccat agctatttga tgacccaatc aaaccgtcct gcttgcactt      1440
     cttgtccaaa ttccccctta acggtagatc acgttcttat aagttgccca ctttataaag      1500
     atatccgaaa acgttttttt ccctacccct taccctctct taaaaattta cttctgaata      1560
     ctcatcctgt gaaacttttt gaatttatgc gctccactaa tctcaaaatt taacctttcc      1620
     cctcaaccct tttgtatttt tactgatatt tccatgtaaa tttattactg ttactgccct      1680
     ctttagaggt gtaaatggcc ttagatgcta aagcaccgct ttaaaataaa attattttac      1740
     tactactact act                                                         1753
//
ID   Nimb-4_LMi  repbase;    DNA;    INV; 5948 BP.
XX
AC   .
XX
DT   27-FEB-2014 (Rel. 19.11, Created)
DT   27-FEB-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5948
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3163-3163 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           400..1899
FT                 /product="Nimb-4_LMi_1p"
FT                 /translation="MKRANKSVAGRKTGVSKRGKADFDATAYDPKSFPSLA
FT                 TPWEERRALNRSEPYSPQYLVCSRTDGESFSSTKPQFFVDQLEDKYGEVAS
FT                 FSKMRSGAVLIQTASPAQSKALLACDKLGDIPVSVTPHKTLNMVQGLIYHR
FT                 DLLSQSDDELRANLERRGVHFVRRVYRGPKDHRVATGAFILAFEGDTLPEK
FT                 VKVMVYQCDVKPYVPPPMRCFRCWKFGHMSSRCTSSPTCRECGRPSHPDAP
FT                 CTPPPVCVNCGQLHPPCSPDCTILHKERKIMEIKTLDRLTYAEARRKYERL
FT                 HPVRLTTSFAAVASSPLPPSMTPKVPPPSTGPRGHQSAAVPSMGGGAPPSA
FT                 PVPPAVGATPPQPSGTPVPTSQPEKEQPPPAPLARKGSLRTAPSETSHSAS
FT                 EDPGRRLKDPQTAGRRASRSSSTPDATEKPSQPIKPKGQREGKKPKPRRKK
FT                 ESVVAAKPQLPSSSTSEDELEILTSPEDLALTDAPDPMILDSAEAERLAAD
FT                 VPME"
FT   CDS           1886..5617
FT                 /product="Nimb-4_LMi_2p"
FT                 /translation="MFPWNNLLYIFIMAHQLKDTVILQWNCGGFFSHLAEL
FT                 RQLLSITPALCIALQETWFPAMRTPALRGYRGYYCNRRVYNRVSGGVCVYI
FT                 LNSVYSEHVPLQTPLEAVAVRVRIPQDITICSLYLPPDGDVPPHTLATLIS
FT                 QLPPPFLLLGDFNAHNTLWGDAVVSGRGREVENLISQLDLCLLNTGAPTHF
FT                 SVAHGSFSAIDLSVCSPGLLPSVHWRTHDDLCGSDHFPIFISLPHRHCPGR
FT                 LPRWALNRANWDQFVPAATLGPLPDDSIDVVVATVTQNILSAAEHAIPLSS
FT                 GCSRRKTVPWWSSEVADAIRDRRRALQRYKRHPSLENFIAFKQLRARARQI
FT                 IRRQKQECWERYVSTIGSRTSPSQVWTKIRRLYGYQSQAAIPGISIQGAVC
FT                 TDQGAIAEAFAEHYARAAASGNYQPAFRTLKQRMERKNLSFTSRHPEVYNA
FT                 PFSEWELLSALAHCPDTAPGPDRLHNQMLKHLSDDSKRQVLALFNRVWSDG
FT                 VFPSQWRASTIVPVLKPGKDPLDVDSYRPISLTNVLCKLLERMVSRRLYWL
FT                 LESRGLLAPCQGGFRKGRSTLDNLVHLESAIRTAFSRRHHLVAVFFDLSKA
FT                 YDTTWRHHILTTLHGWGLRGSLPVFIQNFLAVRTFHVQVGASSSTLHVQEN
FT                 GVPQGSVLSVPLFLVAINGLAAAVGSSVSPSLYADDFCIYFSSSSMCVAER
FT                 QLQGAIRKAQTWALSHGFQFSAAKTCVMHFCRRRPVHPHPELYLDGQLLNV
FT                 VETHRFLGLVFDDRLTWQPHIRQLKQKCWRHLNALRCLSSTTWGADRSTLL
FT                 RCYKALILSRLDYGSVVYGSASPSALQMLDPIHHCGVRLATGAFRTSPVDS
FT                 LLVEAGVPPLRIRRQHLLANYAAHVYGIPTHPNYRLLFPNGVLHIPQRRPR
FT                 SGLTVSARVRSLLSDLESLPLPSLIKFQSRTPPWCIPRPVIRLDLSQSSKH
FT                 SVHPEILRRQFLSILDGYRGSTVIYTDGSMAEGLVGFAYMHAGHNEQRSLP
FT                 EGCSVFTAELVAILRALEHISACPGESFLICSDSLSGLQALNQCFPRHTLL
FT                 QAIQESLYAIDRRGRSVVFLWTPGHVGIDGNELADRLAKEAIHKPTLAIGI
FT                 TVNDLRSQLHSRVLGLWNAEWRSLQTPNKLRAIKETTHVWRSSIRTPRRDS
FT                 VVLCRLRIGHTWLTHSHLLRREDPPRCRCGERLTVAHIXKECPYFATQRQN
FT                 FNLPDSLNLVLGDNASVADAVLNFIRDSGLYRSI"
XX
SQ   Sequence 5948 BP; 1254 A; 1719 C; 1478 G; 1495 T; 2 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaaaacctca atctcaaggt       240
     gtgctacgtg ccgaggagat gcatggctgt tgaggttgaa cagtcgctag cgagcaacct       300
     ctgaggaacc tgccgcacct cagttgtata aggcttaccc aggcaagcgg ggctctgcct       360
     gggtggacct ttagttccct agctgctcgt gggacgacaa tgaaacgagc caataaaagc       420
     gttgccggac gcaaaaccgg cgtctctaag cgtgggaagg cagattttga tgccacagca       480
     tatgacccta agtcgttccc ttccctggct acgccatggg aggaacgcag ggccttaaac       540
     agatcagagc catactcgcc gcaatatctc gtttgctccc gtactgatgg tgaatctttc       600
     tcgtccacca agccacagtt cttcgtcgac cagctcgaag acaagtatgg tgaggtggcg       660
     tctttctcca aaatgaggag tggggctgtc ttgatacaga cggcatcccc agcccagtct       720
     aaggcattac ttgcctgtga caagctgggt gatattcccg tctctgtcac gccccacaag       780
     acgctcaaca tggtccaggg tctcatttat caccgggatc tcctgtcaca gtcagatgac       840
     gagctgcgcg caaacttgga acggagaggt gttcactttg ttaggcgcgt ttatagggga       900
     ccaaaagatc atagggttgc caccggtgca ttcatcctgg ccttcgaagg cgatacactg       960
     cccgagaagg tcaaggtaat ggtctaccag tgcgacgtca agccgtacgt cccgccccct      1020
     atgaggtgct tcaggtgctg gaagttcggg catatgtcct cccgatgtac ttccagccct      1080
     acatgcagag aatgtgggcg tccgtcacat ccagacgctc catgcacccc acctcccgta      1140
     tgtgtgaact gtgggcaatt acatccgcct tgctcgcctg actgtactat cctgcataag      1200
     gaacggaaga tcatggagat caagactctg gaccgactta catatgctga ggcgaggaga      1260
     aagtatgagc ggctccatcc agtgcgccta actacatctt ttgccgccgt tgcatcttcc      1320
     ccacttccac cgagtatgac tcccaaagta ccgcctccct ctacgggccc taggggccat      1380
     caatctgccg ctgttccatc gatgggtggg ggcgctcctc catccgctcc tgtaccacct      1440
     gctgtggggg caaccccccc acaaccatcg gggacaccag tccccacctc ccagccggag      1500
     aaggaacagc ctcctccggc acctctcgct cggaaggggt ccctcaggac agccccttct      1560
     gagacttctc acagtgcttc agaggatcct ggccggaggc tcaaggatcc ccaaactgcc      1620
     ggtcgaaggg cttctcgctc ttcctccact cctgacgcca ccgagaagcc ctcccagccc      1680
     atcaaaccga aagggcagcg agagggtaag aagccaaagc cacgtagaaa gaaggaatct      1740
     gtggtggctg caaagccaca gcttccctca tcttctactt cagaagatga gttagagatc      1800
     ctcacatcac ctgaggatct cgcactgact gatgcaccgg atcctatgat tctggattca      1860
     gcagaggcag aacggttggc agcagatgtt cccatggaat aacctgctct atatctttat      1920
     catggcccat cagctcaaag acactgtcat tctccagtgg aactgcggcg gttttttctc      1980
     ccacctggct gagctgcgtc aacttttgag cataacacct gctctctgca ttgctctcca      2040
     ggagacctgg tttccagcaa tgcggacccc tgcccttcgt gggtacaggg gatattattg      2100
     taatcggcgt gtgtataaca gagtctcagg tggcgtctgt gtgtatatcc ttaactctgt      2160
     gtatagtgaa catgtgcccc ttcagacgcc attagaagct gtggctgtca gggtaaggat      2220
     accacaagac ataaccatct gcagcctgta tcttccacca gatggcgatg taccaccaca      2280
     cacactggct acactgatct cgcagctccc gccgcctttt ctacttctgg gtgattttaa      2340
     cgcccataac accttgtggg gtgatgcagt agtcagtggc cgcggcagag aggtcgagaa      2400
     cttgatatcc cagctcgacc tctgtcttct aaacaccgga gcccccacgc atttcagtgt      2460
     ggcgcatggc tctttctcgg ctattgacct gtcagtctgc agccctggcc tcttgccatc      2520
     tgtccattgg aggacgcatg acgatttgtg tggtagtgat cactttccta tcttcatatc      2580
     actaccccat cgtcactgcc ctggacgcct tcccagatgg gctttaaaca gggcaaattg      2640
     ggatcaattc gttcctgctg ccactcttgg acctctccca gatgactcta ttgacgtggt      2700
     ggttgcgact gtcacccaga acattttatc tgctgcagag cacgcaatcc ccctttcatc      2760
     gggatgctcc cggcgaaaga cagtgccttg gtggtcgtcg gaagtcgcag acgccattcg      2820
     agaccgtcgg cgtgctcttc agcgctataa gcgacacccg tcgctcgaga attttatcgc      2880
     ttttaaacaa ctccgtgctc gtgctcgcca gataatacgg aggcaaaaac aggaatgttg      2940
     ggaacgttac gtgtccacca tagggtcacg tacctctcct tcacaagtct ggacaaagat      3000
     ccgacgcctg tatggctacc agtcccaggc agcaatacct gggatctcta tccaaggggc      3060
     tgtatgtacg gatcaaggcg ctatcgccga ggcttttgcc gagcactacg ctcgcgccgc      3120
     tgcatccgga aattatcaac ctgccttccg cacattaaaa cagcgaatgg aacgcaaaaa      3180
     cctctcattt acctcacgcc accctgaggt atataacgct ccgtttagcg agtgggagct      3240
     cctcagtgcc cttgcccact gccctgacac cgcccctggg ccggacagac ttcacaatca      3300
     gatgttaaaa catctatctg atgactccaa gcgccaagtt cttgcactgt ttaaccgcgt      3360
     ctggagcgac ggtgtctttc catcacagtg gcgtgcaagc accatcgtcc cagtgctcaa      3420
     gccgggtaaa gacccgctag atgtagacag ctatcggccc atcagcctta cgaacgttct      3480
     atgcaaactg ctagaacgca tggtgagccg gcggttgtat tggctccttg aatctcgggg      3540
     cctgctggct ccatgccaag gtggtttccg caaggggcgc tcgaccttgg ataacttagt      3600
     ccatcttgag tctgccatcc ggacagcgtt ctctcgacgt caccatctgg tagccgtgtt      3660
     ttttgacttg tcgaaggcgt atgatacgac ctggcgacac cacattttaa ccacattaca      3720
     tgggtggggt ctccggggct cactcccagt ttttatccaa aactttttag ctgtccgtac      3780
     ctttcatgtt caagttggtg cgtcctctag caccctgcat gtccaggaga atggggtgcc      3840
     tcagggctct gttttaagcg ttccattgtt tttagtggcc attaacggct tagcggcagc      3900
     agttgggtcg tcagtatccc cttcattgta tgctgacgac ttctgcatct attttagctc      3960
     gtctagcatg tgtgttgcag aacgacagct gcagggagcc atacgtaagg cgcagacatg      4020
     ggctctctct catgggttcc aattttctgc tgccaaaacg tgcgttatgc acttctgtcg      4080
     tcgacggcca gtccacccac atccagagtt gtatcttgac ggccaactac tcaatgtagt      4140
     tgaaacgcat cgatttctag gactggtatt tgatgaccgg ctcacatggc aaccacatat      4200
     tcgccagctg aaacagaagt gctggcggca cctcaacgcc ctccgctgcc ttagcagtac      4260
     cacttggggt gcagatcgta gtaccctgct gcgttgttac aaagccctta ttctgtcgcg      4320
     tttggactac gggagtgtag tatatggttc cgcatcgccc tcggcgctgc agatgttgga      4380
     tcctatccac cactgtggag ttaggctcgc gacaggggct ttccgaacca gccctgtgga      4440
     cagtctcctt gtggaggctg gggtgcctcc tctgcgaatc aggcggcaac atctgctggc      4500
     gaattacgca gcccatgtgt atggtatccc cactcatccc aactaccgcc tactttttcc      4560
     gaacggcgta ctccatatcc cacaacggcg gccgaggtcg ggtttgacgg ttagtgcccg      4620
     tgtccggtct ctcctgagtg acctggagtc tcttcctctg ccatctctga tcaaattcca      4680
     gtcgcgtacg ccaccatggt gtattcctcg acctgttatt cgactggact tgtcgcagag      4740
     ctccaaacac tctgtccacc ctgagatcct tcgccgccaa tttctgtcaa ttcttgacgg      4800
     gtaccggggc tccacggtca tctacacgga tggttcgatg gcagaaggtc ttgttggctt      4860
     cgcctatatg cacgcaggac acaacgaaca gcgctcctta ccggagggct gcagtgtgtt      4920
     cacagcagag ctggtggcca tccttcgtgc actcgagcat atttctgcct gccccgggga      4980
     gtccttcctc atttgcagtg actccctgag cggcctacag gctctcaatc agtgcttccc      5040
     tcgccatact ttgcttcagg ccatccaaga atccctctat gccatcgacc gacgtgggcg      5100
     gtcagtggtc tttctctgga ctccaggaca tgttgggatc gacgggaacg agctagctga      5160
     taggttagca aaggaggcta tccataaacc taccttggct ataggtatca cagttaatga      5220
     cctccgttcg cagttgcaca gccgagttct tgggctgtgg aatgcagaat ggcgttccct      5280
     ccaaacaccc aacaagttgc gggcgataaa ggagacaacg cacgtgtgga ggtcctctat      5340
     acggactccc cgcagggact ctgttgtcct ctgccggctc cgtatcggcc atacttggct      5400
     gacgcacagt caccttctgc gtcgcgagga ccctcctcgt tgtcgatgtg gtgagcgtct      5460
     gacagtcgcc cacatcktga aggaatgccc gtatttcgcc actcaaaggc agaattttaa      5520
     tctccctgac tccttaaacc ttgttttagg tgacaatgcc tctgtggctg atgctgtttt      5580
     aaattttatt cgtgacagtg gattgtacag atccatctga tgtttagcac tgtgttcatt      5640
     atctatttgc tctgcgcccg cctaccgctt ttaggcaggt ggttttaatg tgtaaaagtg      5700
     gscggacgcc ctactatctt gtctgtggtc acttggccag gacactctgg tatcctcttt      5760
     ccacctctct cttcttttat cagtttttac tttgattctt ttacttcttg acgtgttcca      5820
     ccctctgttt gccgtgtttt aacacatcgt tttctgtcaa attttagtga tctttcatgt      5880
     catctctttg gttggaacaa gggactgatg accatagtag tttggtccct ttaaaaccca      5940
     aaccaacc                                                               5948
//
ID   Nimb-4_RPr  repbase;    DNA;    INV; 6986 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-6986
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3482-3482 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2511..6194
FT                 /product="Nimb-4_RPr_2p"
FT                 /translation="MMFESIIQWNMRGYTSNKEGLRRMVAEYRPFGLCLQE
FT                 TKIRPGHIIHIPGYKIYSHEVQPAPGGRAHGGVVVCVRDNIPSRRLNLQTN
FT                 IQAVAVRLTTPLQITLASIYLPDIYWRRSDLENLLSQLPAPVLLMGDFNCH
FT                 NTWWGSARTDARGRALEEIIDNSNLMLLNSGEATHFNAHSGGFSAIDLSVA
FT                 TPTIAVRLEWTTLDHLYNSDHFPILVSSSISRSDFVTPRRYDINKANWPAY
FT                 AARVVIPPPTGNTTLDSELFVKALEEASGGSIPRAGGRVPRTPVPWWTPEC
FT                 KSAIAATKQALNRFKRYPTDENLINFKRLRARERRIINESKRASLTSYVSK
FT                 ISTSTTLKEVWSKIKTLSGGRKTPSIPILKVNDVVVTEPREVAESLAGYFA
FT                 QVSSSQNYSAEFLRRKGNVEQQPLDFETAISETYNEPLTIHELENTLKKCR
FT                 DSAPGVDGIPYAMIRNLNATAKEGLLRLYNTIWETGQYPDGWREAIVIPIP
FT                 KEGKDPSDPSSYRPISLTTCLSKVLESIINYRLVYVLETRGLYSQHQAGFR
FT                 RHRSTLDQVSHLEVYVQNAFMRREHVLAVFFDLEKAYDTTWRHAILRKCHE
FT                 WGLRGKLPKFLRGFLESRRFRVRLGSVLSDQYHLENGIPQGSVLSVTLFTI
FT                 AVNCLAEVVGDPLKISLYVDDLAIYLAGKDLHEVNVLLQQAIDRVADEAKR
FT                 NGFKFSRTKTVCLHFCRLRHEHNAPTLYLEGTPIQYKPNVRFLGLIFDTKL
FT                 SWQDHIDYTSKKSRRTLDIIKFLGSYKWGTEREILKRIFTTLTRSKLEYGA
FT                 PVYSSARKSRLKLLDRIYNEGIRLFTGAFRTSPLQSLYVESGMLPPQLRRE
FT                 QLTLAYAAGIWGKRSHTLYPAIFESPHDMEFRHQRTRTRPLGVRVKEILAA
FT                 EGIELGEVMNWGFAPDPPWLLPSAKVRMDLAIHKKEETPPVVYRQKLLEXM
FT                 NFYYDSRPVFTDGSKMGNGVGSAVYTEGVTLSWTLPHYASVYTAELYAICQ
FT                 ALKLIMDKNYNKALVLTDSLSAVMALRDKFSTDPLVSKICHYLSELFSRGQ
FT                 RVTFAWVPGHIGVSGNEQADEAAKRAASTTTDEVIPVRPTDLKVYMKLIMR
FT                 NKWQGQWDRTNEKLKEIKPRVWNATVENYPRHESVILTRLRIGHTRVTHGY
FT                 LLIAERRPRCPRCRERLTVSHVLEGCQALRSQRERAGLPHDKRAILEEGSP
FT                 YIRRLFTYLKHINLYCKI"
FT   CDS           join(642..1559,1477..2340)
FT                 /product="Nimb-4_RPr_1p"
FT                 /translation="MNPILIIMDNQINPLGPSPPILPTQIPNPLPLPNNPL
FT                 PXPLSAPNQPLPNHTFPISHPYNLPTTTGXTRQRQGEDMDISXGKTESGLQ
FT                 FTLQPFGPSSPPRKKAKGGNKSQVSNKFIDFEEDNWGRFFVVKKKEGTFLN
FT                 ECSFKLHKFIKSIVGKTKSVKKLNDGSICIEAENRMQAAAILKLQKYMDAE
FT                 LEAGPHKRLNSSQGVITCRDFLNSTVEDIKEGLADQGVVEVRRIKRRQDGS
FT                 LVDTASLVLTFNRPKPPQTIDAAFYKLKVRPYIPSPMRCYKCQSSGTPQRD
FT                 ARLRSGVHMWKANADVISVKVRAHLNAMQGSEAVCTCGKPMHDGECTPPIT
FT                 CVNCGGEHSARSSGCPTLIKEKEIQKVKTLQQLPYHEARAIVESAAYASSA
FT                 ITFAEKLRTPIPVAHLTSSAQIQGHLIKGPSPALKGTIVKVGEIPPLTTSP
FT                 TLRGAVPKVGSTPPSKLSSPHGEPVASRLQSTAPTTSGSDIKVGLNPPQNA
FT                 TASKGEWKVVSPPKRSLRRKVKPIMSPPYPTRTRGKKSLTEGQTSSKSNVR
FT                 SPRKQWLLMGTDIEASESEGGNASDNPPRRRKKGWPKGKPKDKCATE"
XX
SQ   Sequence 6986 BP; 2046 A; 1570 C; 1661 G; 1701 T; 8 other;
     cccccgtagg gggaagtgga ctagccactt cttcagggag cttggcgtcc ctgcgggtat        60
     cccagtctaa caacacttca acactcacac tgacacccct taacactcac acactacact       120
     taggacctgc agaggtagtt gctgtgtgca gctacttggg tttagcgaac ccacaggtaa       180
     actcgagctc cccaccacac acactcattt acaccttaac attcacacta tacagacgac       240
     tacacacact gcacgaacaa ggacacgcac tcgtcgagag tcagagtata aatatctctc       300
     cctcgcgtgc cgtggcgagg ctttggggct agggtggaaa agaggatcct gggcattgag       360
     ggagacgttg acctgcgggc atcttatccc aacacatgtc tttggcctcg gcttcacccg       420
     agagctccac ctggaggata cccctacttc aggaaatcgg ctagggaacc ctgtctcaga       480
     caggttccta ggggtaggaa gggggtcacg ggggcacggg tcggtacctg gtaccggaac       540
     gttgtcttcc gtggcaccgg tctatgtcgg ggtgtgatgg tccacccgga aagtaaccgg       600
     gtccatctga gcgtccgtgg aggcggggcc cacgtgcccc gatgaatccc attttgatta       660
     tcatggataa tcaaatcaac ccattagggc ctagcccacc cattctccct acccaaatcc       720
     ccaatccctt acctcttcca aataatcctc tccctmtacc tctctcagct ccaaaccagc       780
     cacttcctaa tcatactttc cccatctccc atccttataa tctcccaaca acgaccggta       840
     mwacaaggca acgacaaggc gaggacatgg acatctckam aggaaaaacg gaatcgggtt       900
     tgcagttcac cttgcaacca ttcggccctt cttccccgcc aaggaagaaa gccaagggcg       960
     gcaacaagag tcaggtaagt aataaattta tagattttga agaggacaac tggggaagat      1020
     tctttgtagt taaaaagaag gagggtacat tcttaaacga gtgttccttt aaattgcata      1080
     aatttattaa gagcatagtt ggcaagacca aaagtgttaa aaaactcaac gatggttcta      1140
     tttgtataga agcggagaac cgtatgcaag ctgcagcaat cttaaaattg caaaaataca      1200
     tggatgctga acttgaggct ggtccccaca agcgactaaa tagttcgcag ggggtaatta      1260
     cttgtaggga tttcttaaat agcacggttg aagatataaa agagggtttg gcagatcaag      1320
     gagtagtaga ggtgaggagg atcaagagaa ggcaagatgg gtccttagtg gacaccgctt      1380
     ctcttgtact caccttcaat cgaccgaaac cgccacagac aatagatgca gcgttttata      1440
     aactgaaggt gcgcccgtac ataccatctc caatgagatg ttataagtgt caaagttcgg      1500
     gcacacctca acgcgatgca aggctcagaa gcggtgtgca catgtggaaa gccaatgcat      1560
     gatggtgaat gcacaccacc aataacctgt gtaaactgtg gcggggagca ctctgccaga      1620
     tcctctgggt gtcctacatt aataaaagaa aaggaaattc aaaaagttaa gacattgcag      1680
     cagttgccct accatgaggc tagggcaata gtagaaagcg ctgcgtatgc ttcgagtgca      1740
     ataacttttg cagaaaaatt gaggacaccc ataccagtgg cacacttaac aagctccgcc      1800
     caaattcaag ggcacttaat aaaaggcccc tcccctgcct taaaggggac aattgtaaaa      1860
     gtgggagaaa tcccaccatt aaccacctcc cctactttaa ggggagcagt tccaaaggtg      1920
     ggttcgaccc caccatcaaa actaagctcc cctcacgggg agccagtagc ctcaaggcta      1980
     caatcaactg ctcccactac tagtgggagc gacataaagg tggggttaaa cccgcctcaa      2040
     aatgcaaccg cctccaaagg ggagtggaaa gtggtaagtc cacctaaacg ctccctgagg      2100
     cggaaagtaa agccgattat gtctcccccc taccctacta ggactagggg gaaaaaatct      2160
     ttaacggaag gacaaacgtc ctccaaatcc aatgttcgct cccccaggaa gcagtggctt      2220
     cttatgggga cggacattga agcstcagaa tcggaggggg gaaatgcatc cgacaaccct      2280
     cctagacgaa gaaaaaaggg ttggcctaaa ggcaagccca aggataagtg tgccactgag      2340
     taaatgcatt gtagtgttaa accatatcac agcatccatg tattttagca gctatttcca      2400
     tactctgaat ttattttata acataatgaa tagtaggtta catttattaa atattttaaa      2460
     tgcaatagat attaaaaaga tcctgccagg tttaatgatt gggaaaaatc atgatgtttg      2520
     agtccattat acaatggaac atgcggggct atactagtaa taaagaagga ctacgccgaa      2580
     tggtggcgga atatcgtcct tttgggttgt gcctccagga aacgaagata cgcccaggtc      2640
     atatcattca catacctggg tacaaaatat acagtcatga ggtacaacct gccccaggtg      2700
     ggagggcgca cggtggtgta gtcgtctgtg tacgggataa tatccctagc aggcggctca      2760
     acctacaaac taatatacaa gctgttgccg tgcgtctaac tacaccacta cagatcacgt      2820
     tagctagcat atatctgcca gacatctatt ggcgtagaag tgatctggag aatctgctct      2880
     cgcagctccc tgcgccggtg ttgttgatgg gagatttcaa ctgtcacaac acctggtggg      2940
     ggtcagctag gactgatgct cgaggcagag ctcttgagga gattatagat aatagcaact      3000
     tgatgctcct caatagtggt gaagcaacac acttcaatgc acactcggga ggctttagtg      3060
     cgattgacct gagtgttgca actcccacca tagcagtacg tctagaatgg accacactag      3120
     accatttata taatagcgac catttcccaa tcttagtatc gagctccatc tccagatccg      3180
     actttgtaac tccacggaga tacgacatca acaaggcgaa ttggcctgct tatgccgcca      3240
     gagtggttat accaccccct acaggaaata ccactctgga tagcgagctg tttgtcaagg      3300
     ccctggagga ggcatctggt ggttccattc cgagagctgg cgggagagtc ccacgaaccc      3360
     ccgtcccatg gtggacccca gaatgtaaaa gcgccatagc agctacaaag caggccttaa      3420
     atagattcaa gaggtatccg acggatgaaa atctaataaa ctttaaaaga ctgagagcca      3480
     gagagaggcg tataattaat gaatcaaaaa gggcaagtct cacctcctac gtgtcgaaga      3540
     tttccacgtc aacgactttg aaggaggtgt ggagcaaaat aaagactctc tctggcggac      3600
     gcaaaacccc gtcgatacca atattaaaag tcaatgatgt cgtcgttacc gagccgcgag      3660
     aggtagctga gtccttggct ggttactttg ctcaagtttc cagttcacaa aattactcgg      3720
     cagaattcct ccggcgaaaa ggtaacgtgg agcaacagcc actcgacttt gaaaccgcta      3780
     tcagtgaaac ttacaatgaa ccgctaacca tacatgaatt agaaaatact ttaaagaaat      3840
     gtagagattc tgctccaggt gtggacggaa tcccatatgc tatgattcga aatttgaatg      3900
     caactgcgaa agaaggcctt ctccggttat ataataccat atgggagacc ggccaatatc      3960
     ctgatggttg gcgggaagca attgtcatac cgatccctaa agaaggaaaa gaccccagcg      4020
     atccctccag ttacagaccc atttcgttga ccacttgctt gagtaaggtc ctcgaatcta      4080
     taatcaatta tagattagtc tatgtattag aaactagagg actttacagc cagcatcaag      4140
     cgggatttcg cagacatcgt tccacgttgg atcaagtgag ccacctagag gtctatgtgc      4200
     aaaatgcatt tatgcgtaga gagcacgtgc tggccgtgtt ttttgacctc gagaaggctt      4260
     atgatacaac gtggaggcat gcgattctgc ggaagtgtca cgaatggggt ctgagaggga      4320
     aattaccaaa attccttcgt ggatttttgg agtcacgaag gtttcgagtt cgtctggggt      4380
     cagtactctc agaccagtac catctggaaa atggaatacc acagggatcg gtwctaagtg      4440
     tcacactctt cacgatagcg gtcaactgtt tagccgaagt tgtaggagat cccctaaaaa      4500
     tatcactgta tgttgatgac ctcgccattt atttagcagg caaggactta cacgaggtta      4560
     atgtactcct acaacaggcg atagatagag tggctgatga ggccaaaagg aacgggttta      4620
     agttctctag aactaaaacg gtgtgcctac acttttgtcg attaagacat gagcataatg      4680
     ctccaacgct atacttggaa ggcacaccca ttcagtacaa acccaacgtt cgtttcctgg      4740
     gcctcatttt cgatactaag ttatcctggc aggatcacat cgactacact agcaaaaaat      4800
     caaggagaac cctcgacata ataaaatttt taggaagcta taagtggggg acggagcggg      4860
     aaattttaaa acgtattttc actacgctca cccgttcaaa attagaatat ggagccccgg      4920
     tttatagctc tgcgcgcaag tcacgcctga aactactaga tagaatttat aatgaaggaa      4980
     ttagattatt tacaggcgcc ttccgaacca gtccattaca aagcctctac gtagagtcag      5040
     ggatgttgcc accccagctc aggagagaac aactcaccct ggcctacgca gccggaatat      5100
     gggggaaacg gtctcatacc ttgtaccccg ccatatttga gagcccacat gatatggaat      5160
     tccgacacca acgcacgcgg acgaggcccc tcggggtccg ggtaaaggaa attttagcag      5220
     cggagggcat tgagttagga gaggttatga attggggttt tgctcctgac cctccctggc      5280
     tattgccctc tgcaaaagtc cgcatggacc tggcaatcca caaaaaagaa gaaactcccc      5340
     ccgttgtcta tagacaaaag ttattagaaa tkatgaattt ttactatgac tcccgacctg      5400
     tctttacgga cgggtcgaag atgggcaacg gtgtgggtag cgctgtgtac acagagggag      5460
     ttacccttag ttggacactc cctcattatg catcggtgta cacagccgag ttgtatgcta      5520
     tatgccaggc cctaaagcta atcatggaca aaaattacaa taaagcgttg gtgttaactg      5580
     actcactaag tgcagtcatg gctctccggg ataagttctc gacggaccca ttggtctcca      5640
     aaatttgcca ttatttatct gagttgtttt cacgtggtca aagggtgacg ttcgcttggg      5700
     tcccgggcca cattggtgtg tccggtaatg aacaagcgga cgaggcggcc aaacgcgccg      5760
     cctctacaac tacagatgaa gtcatccctg tgcgtcccac tgacctaaaa gtatatatga      5820
     aacttataat gagaaataaa tggcaagggc agtgggaccg cacaaacgaa aaattaaaag      5880
     aaataaaacc acgtgtttgg aatgctacag tcgagaacta cccgcggcac gaatctgtga      5940
     ttttgacaag gctaaggatt ggacatacac gtgtgacaca tgggtacctc ctaatcgccg      6000
     aaagaaggcc gaggtgcccc cgatgccgag aaaggctgac agtgtcgcac gtgttggaag      6060
     ggtgtcaggc actgcgtagc caaagagaaa gagcaggcct gccacatgac aagcgcgcga      6120
     ttcttgaaga gggttctcct tacataagga ggctatttac atatttaaaa catattaatt      6180
     tatattgtaa aatttaggtt agcatttagg ttagtttata gtttagttct tttaaagggg      6240
     aaaggaatat cgagtacttt ccccttgtgg tgcgattgta tttattagcg tgaatgtatt      6300
     tattggcgtg aatgtattta ttggcgtgaa tgtatttatt ggcgtgaatg tatttattgg      6360
     cgtgaatgta tttattggcg tgaatgtatt tattggcgtg aatgtattta ttggcgtgaa      6420
     tgtatttatt ggcgtgaatg tatttattgg cgtgaatgta tttattggcg tgaatgtatt      6480
     tattagcaag aatgttgtat gaatgtttag gatagatcac agtccggggt tgaaagaaat      6540
     tttataaaag tatttcaacc cctctaggtt aattttagac taagtttatt ttagaatgtg      6600
     caggaaaatt tgttaaaagt actgcacatt atcatagttc taaggaaata gcctccttat      6660
     ggtagattag gtctagtaat tagttatatt cggtaataaa acacttttgg tcttgcttta      6720
     atatctttag ttaatgtaga taggggaagg cacgaatata ttccactctc cccctcgtcg      6780
     actggatcga tggacaagag gggatgagtg ggatatatac tccaacatac ctgggctcca      6840
     ccctaccttg ctaagcaagg tgcagtatgt ggaagcccga aggtgacgcg tgccgaccca      6900
     gctcgagtgg ataaaagaag agagaagatt aaaacgatta ggggcgctaa tgacctcagc      6960
     agtcgatgcg ccaaaaaaaa aaaaaa                                           6986
//
ID   Nimb-5_LMi  repbase;    DNA;    INV; 5322 BP.
XX
AC   .
XX
DT   02-MAR-2014 (Rel. 19.11, Created)
DT   02-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5322
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3164-3164 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1379
FT                 /product="Nimb-5_LMi_1p"
FT                 /translation="MDIPIEELKAEWATEGIVDVQNIKKRVDGELVSSESF
FT                 ILTFNTPKLPEHVKAGFLRLKVRPYVPNPMRCFKCQRFGHTTLGCKGEATC
FT                 GKCGKAAHEGTACTPPDKCVNCSGEHPVWSRDCQVYLEERKIQEIKTTRRI
FT                 SYAEAKKVFKAMQPPVFPTSFAAALQKPVTTVDASTQTEAVSVSTNTCTCP
FT                 CTCQAAEAPLPLAPPNTAEKATGTAFADRVVSVATEVVLDKEPQEIIKKAP
FT                 HQRSASQKKNIPPKQSAPQVPLSSSSSQKKKPRKVSPRPLATLSGASSDVL
FT                 MAALTDEEDVIMDLDASSPEPSSPSATQRSKSASPSRHKGREKIDPHR"
FT   CDS           1384..5073
FT                 /product="Nimb-5_LMi_2p"
FT                 /translation="MAPILQWNLAGFRTRLEELQLLVKDRPFCVSLQETHF
FT                 KRTDTPVLRGYQLHRKDDLTGDRAQGGVAVFVRDTFHSSPVPLTTTLQAVA
FT                 VRILAHHDITVCSLYLPPGEHVDSNLLTQLIGELPRPFLLLGDFNAHNXLW
FT                 GSNNNCPRGRMVETVIHSSDVVLLNTGQPTHFSTATGSSSAIDLSLCSPAL
FT                 AHTAQWSVDDDLHGSDHYPIWIDLPVAIDCSGKPPRWQLHKANWALFQQLA
FT                 IFERCHDVQEWVDHITTVIHNAADASIPKSKSTLQRPAVPWWNDACRSAIR
FT                 DRRAALRRFHRCPTDANLANFRVARARARRIIKESKQRSWQEFLNSINRST
FT                 PAGKVWEAIRRISGRNSRPPIAAVRGQGCLLQSPRDIAQVMAESYAAVTSD
FT                 SRQDPVFRQYRTIQERVGFDLRSSNVEDYNQPFSMWELESALSAARDSAPG
FT                 YDEIPYRLLKQLAPQSKGVLLHLFNEIWVTGNFPCSWKESILIPILKPGKD
FT                 RTDPGSYRSISLTSCIGKTLERMVNRRLVWVLERRSLLSRSQCGFRRYHST
FT                 LDNLTLLESAIQQAFLRKQHLIGVFFDLEKAYDTTWRRLVVQQLYEWGFRG
FT                 RLPTFIRSFLSDRYFRYKVGSALSDRFKQENGVPQGSVLSVTAFAIAINSI
FT                 TSTVRPPVQCSLFVDDFSIFCASSSIATAARQLHLTIRRLEEWCNTTGFKF
FT                 SLEKTVCVDFNRSRSLFNTPVLKLGDTVLTFQDKVKYLGLTFDERLTWLPH
FT                 LKEVKLRCLKALSILKCLSHRSWGADRARLLQFYKAFVRPRLEYGCQVYGS
FT                 ARPSYLKILDXVHHEGIRLATGAYRTSPVLSLCAEAGEPPLSIRRLLLVAR
FT                 LAYRSLSAPHTLLSLXVAQQPNQRLFHNRPQATRPFGIRAQESLELLQVQG
FT                 IKVQRQGWSRGSPWLLHRPTLILDLTAFKKPCTSDSFYKSRFLEILNHHAN
FT                 FIIVYTDGSKQGDRLGCSVVFPDSVLRIGLPKQFSVYYAELFAILRALEQI
FT                 KRHHGMKFLICSDSHSALLAVDQMYPADRMVQDXQDALLALQRQHKEIIFC
FT                 WVPGHIGIQGNELADAAAREACSLPPAVRCSVPLKAVTSFVTRTTMALWED
FT                 QWLDVADNKLRAVKSSVRPWRTSFRPRRADEVALTRLRIGHCPLTHGFLLR
FT                 SEEPPECGRCRTQLSIRHILTECVLFAGTRANLGLSQDLKSILADDEASVD
FT                 RVLRFCTMSGLLPKILGVRF"
XX
SQ   Sequence 5322 BP; 1287 A; 1345 C; 1316 G; 1368 T; 6 other;
     cccagtcgaa aaagaggtct cgggtggcta gtcccccaga ccagttcagt aacaaaaaga        60
     gttttgtcca tagtaacaga acgcagactg ctagccagaa tgtgtttatn atcattaaaa       120
     ggaaagaagg ttcttttgag aagatttcgc ccttttatat caataagggc ttagaaggtc       180
     ttgcgggcac tttgaaatct gttaaaagat tgcggaacgg taccttgttg gttgaaacgt       240
     caacctccca acaggcggaa aatctgcaga aggcaaagta tctgggtgaa tacgaaatcg       300
     acgcagaact acacagtacc ctgaactaca gtaagggcgt agttttctgt agggacctga       360
     tggacattcc aattgaagaa ctcaaggcag aatgggcaac ggaaggcata gtggacgtcc       420
     agaatattaa gaaaagggtg gatggagaac ttgtgtcatc tgagagcttc atccttacct       480
     ttaatacccc taaactccct gagcatgtga aggcagggtt tttgcggttg aaggtccgtc       540
     cctacgtccc taatcccatg cgctgtttta agtgccagcg ctttggacac accacgctcg       600
     gctgtaaggg ggaggccact tgtggcaaat gtggaaaggc ggcacatgag ggcactgctt       660
     gtacgccacc tgacaaatgt gtcaattgtt ctggggaaca ccctgtttgg agtcgggact       720
     gtcaggtgta tcttgaggaa aggaaaatac aggagataaa gacgaccagg cgcatttcct       780
     acgcggaggc caagaaggta tttaaggcca tgcagccacc tgtatttccc acctcgttcg       840
     ctgccgcctt acagaaaccc gtcaccacag tagatgcctc gacacaaact gaggctgtca       900
     gtgtcagcac caatacttgc acatgtccgt gcacatgtca ggcagctgaa gctccccttc       960
     ctcttgcccc accaaatacg gccgaaaaag ctacaggtac cgcttttgca gaccgtgtgg      1020
     tctctgttgc tacagaagtt gtgctcgata aggaaccgca ggaaatcatt aagaaggcac      1080
     ctcaccagcg aagtgcctct caaaagaaga atattccgcc aaagcagagt gctccccaag      1140
     tccccctttc ctcctcatct tctcaaaaga agaagccgag gaaagtatct ccacgtccgc      1200
     ttgcaactct ttcgggagcg tcatcggacg tcttaatggc ggcgttgact gacgaggagg      1260
     acgttattat ggacctcgat gcgtcatcgc ctgaaccaag cagtccatct gctacccagc      1320
     gctccaagag tgcctcacca tcgcggcaca agggtagaga gaagatagac ccacacaggt      1380
     gacatggctc ccatactgca gtggaatttg gctggattca ggactcgttt ggaggaactt      1440
     cagcttcttg tgaaggatag gcctttctgt gtctcccttc aagagacaca cttcaaacgg      1500
     actgatacac ctgtcctgag aggctatcaa ctccatagga aagacgacct aacgggtgat      1560
     agagcacaag gtggtgtggc agtgttcgtc agggacactt ttcactcctc acctgtgcca      1620
     ttgaccacta cactgcaagc agttgctgtt cgtatactgg cccatcatga tatcacagtc      1680
     tgctctcttt acttaccgcc tggagagcat gttgacagta atctcctgac acagcttatt      1740
     ggagaactcc ctcgtccctt tcttctttta ggagatttta atgcgcataa tncactatgg      1800
     ggctctaaca acaactgccc caggggacgg atggttgaga ctgtgataca ctcctccgat      1860
     gtcgtcttac tgaacacagg ccagcctacg cattttagca ctgctacagg ttcgtcttca      1920
     gccatagacc tctccctctg ctcgcctgct cttgcacaca ctgctcagtg gagcgtggac      1980
     gatgaccttc atggcagcga ccactatccc atttggatag acttgccggt cgccatagat      2040
     tgcagtggga agccgccgag atggcagctg cacaaagcta actgggcact ttttcagcag      2100
     ttggctattt tcgagcggtg tcatgatgtc caagaatggg tggatcacat cacaacagtg      2160
     attcacaatg ctgctgacgc ttccatcccg aaatcgaagt caacgcttca gcgaccagct      2220
     gttccttggt ggaacgatgc ttgtcgttca gcgattagag acagaagagc agcattgcgt      2280
     cgattccatc ggtgccctac cgatgcgaat ttggccaatt ttcgagtggc aagggcacgg      2340
     gcaaggagaa ttattaaaga gagtaagcag aggtcttggc aggagttcct gaactccatc      2400
     aataggtcca cgcctgcagg taaagtatgg gaagccatta ggaggatttc gggacggaac      2460
     tcccgaccgc caatagcagc tgtgcgaggg cagggatgtc ttttacaatc gcccagggac      2520
     attgcccaag ttatggcaga atcctatgca gctgttacat ccgattctcg ccaggatcca      2580
     gtcttccgtc aatatcgcac gatacaggag agggttggct ttgacctccg ttcctccaac      2640
     gttgaggact acaaccaacc tttctcgatg tgggagctgg aatccgcatt gtcagcagct      2700
     cgtgattctg cacctggcta tgacgagata ccgtacagac tgctgaaaca gttggcaccc      2760
     cagtcaaagg gggtcctctt acatcttttt aacgaaattt gggttacggg gaattttcca      2820
     tgttcttgga aagaatccat tttaattcca attttaaaac cggggaaaga tcgcaccgac      2880
     ccaggtagtt atcggagcat tagcctcacg agttgcattg gtaagacgtt ggagcgtatg      2940
     gtcaaccggc gcttagtatg ggtcctcgaa aggagatcct tacttagccg ctctcaatgc      3000
     gggtttagga ggtaccactc tacactggat aacctcaccc tgcttgaaag tgcgatccaa      3060
     caagctttcc tacggaagca acacctaatc ggtgttttct ttgacctgga aaaggcgtat      3120
     gatactacct ggcgacgcct tgttgtacag cagctttacg agtggggttt tcgtggacgt      3180
     ttgcccactt ttatccgatc tttcctctct gacaggtatt ttagatacaa ggttgggagt      3240
     gccttgtctg accgttttaa acaagagaat ggtgtcccgc aagggagtgt tttaagcgta      3300
     acggcattcg ccatagccat aaacagcatt acatccaccg tgcgaccgcc tgtacagtgt      3360
     tccttgttcg tggacgactt ctccatcttc tgtgcgtcct cctccattgc aacggcagct      3420
     cgtcaattac atttgacgat caggcggttg gaggaatggt gtaacaccac tggtttcaag      3480
     ttttccttgg agaaaactgt ctgtgtggat tttaatcgct cccgttccct ttttaataca      3540
     cctgttttaa aactaggaga cactgttctc acctttcagg acaaggtcaa atatcttggc      3600
     ctcactttcg acgagaggct gacgtggttg ccgcacctta aagaggtcaa actgcgatgc      3660
     ctcaaggctc taagtatcct aaaatgtctc agtcatcggt cttggggtgc cgacagggca      3720
     cgtctgctcc agttctataa agctttcgtg cggcctagac tggaatatgg ctgccaggtc      3780
     tatggatcgg ccaggccttc gtacctgaaa atactggatn cagtacacca cgaaggtatc      3840
     aggctggcga ctggtgcgta tcgcacaagt ccagtactta gcctgtgtgc agaagctggt      3900
     gagcccccgc tctctattcg ccgtcttctg ctcgtggcac gcctggcgta cagatctctg      3960
     tcagctccgc acacgttact ttctctcngt gttgcgcagc agcccaacca acgtttgttc      4020
     cacaaccgcc cacaggctac gagaccgttt gggattagag cacaggagag ccttgagttg      4080
     ctgcaggtgc agggcatcaa ggttcaacgc caggggtgga gtaggggttc tccctggctc      4140
     cttcataggc ctacattgat tttagatctg actgctttta agaagccttg tacctcggac      4200
     agtttttata aaagtagatt tttggagatt ttaaaccacc atgcaaattt tattattgtc      4260
     tatacagatg gatccaagca gggagatcgt ctcggctgct ccgttgtgtt ccctgactct      4320
     gtccttcgga tagggctccc aaaacagttt tccgtttact atgcggaact gttcgctatc      4380
     ctgagggcac tagaacagat taaaaggcat cacggtatga aattcctgat ctgctcagac      4440
     tcccacagcg ccctcctcgc tgtcgaccaa atgtatccgg cagatcggat ggtgcaggac      4500
     atncaggacg ctctccttgc attgcaacga caacacaagg agataatttt ctgttgggtt      4560
     cctgggcaca tagggatcca gggaaatgag ctggccgatg cagcagctag ggaggcttgt      4620
     tctctccccc ctgccgtacg ctgttccgtc ccgctgaaag ccgtcacctc ctttgtgaca      4680
     cgcacaacca tggcgttgtg ggaggatcag tggttggatg tggcggacaa taaactacgc      4740
     gcggtaaaat cctcagtccg cccatggcgt acgtccttcc gccctcgacg agctgatgaa      4800
     gtcgccctca ctcgtctccg aataggacat tgcccgctga cacacggttt ccttttacgc      4860
     agtgaagaac cgccggagtg tggcagatgt aggacacaac tgtcaatacg acatatttta      4920
     acagaatgcg ttttatttgc tggtaccagg gcaaatttgg gtctctcaca ggacctgaaa      4980
     tctattttag ctgacgatga ggcgtctgtg gatcgtgtcc tacgattttg tactatgtct      5040
     ggactacttc ccaaaatact gggtgtgcga ttttaatgtg tgttagagtg gctcggccac      5100
     cctttatttt taagtagtcg ccgggccaca tatatctgtc aatgttttat cctcagtttt      5160
     agtcctttta cgagttgttt taagctatcc ctacagctgt aggtgtgctt ttatatttcg      5220
     caagtccatc cgacatgcgt catttttctt ccatccgttc angtttgagc acgggcgctg      5280
     atgacctcga tgttgagcgc cctatatcac caatcaatca at                         5322
//
ID   Nimb-6_LMi  repbase;    DNA;    INV; 6012 BP.
XX
AC   .
XX
DT   02-MAR-2014 (Rel. 19.11, Created)
DT   02-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6012
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3165-3165 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           397..1911
FT                 /product="Nimb-6_LMi_1p"
FT                 /translation="MKRAINSVGGRKNAVSKRGKSEFNATAYDPKTFPSLA
FT                 TPWEERRALRRSEPYSPRYLVFXRTDGXSFXSTKPQFFVDXLEDKXGEVAS
FT                 FSKMRSGAVLIQTASPAQSRALLACDRLGDIPVSVTPHKXLNMVQGLIYHR
FT                 DLLSQXDEELRANLERXGVHFVRRVYRGPKDNRVATGAFILAFEGDTLPEK
FT                 VKVMIYRCDVKPYVPPPMXCFXCWKFGHMSSRCTSSPTCRECGRPPHPDAP
FT                 CTPPPVCVNCGQXHPPCSPDCTVLHRERKIMEIKTLDRLXXXEAXKKYERL
FT                 HPVNMXTSFAAVTSSPRTTGTTPTKVSPPPVGPRGRKSXTAPSSGGGXXPS
FT                 AAXAPVVGATSPQPSGTPVPTPQPEKKQLPPAPLARKGSLGTLPSGDSQGA
FT                 PGDPSLWLKDPKTAGRRASGSSTVPDAASGKPSQPLTPKGQREGTKKTKKK
FT                 KDKXKDXSVARKERSLTSSASEDEVEILASPEDLAFLGSPEPMVLDPADSA
FT                 ELAAGAPAE"
FT   CDS           1934..5629
FT                 /product="Nimb-6_LMi_2p"
FT                 /translation="MAIQHAAKEILQWNCGGFFRHLAELRQLLCRFPAICL
FT                 AMQETWFPVERTPALRGYRGYFKNRTVYDRVSGGVCVYVHASVPSAAVPLQ
FT                 TPLEAVAVRLRVLQDFTVCSVYLPPDDAVSPVDLAALVAQLPPPFLLLGDF
FT                 NAHHTLWGGAQTSARGRDVESLLSEQNLCLLNTGAPTHFSTAHGTYSAIDL
FT                 SVCSPGLLPHLTWRVHDDLCGSDHFPIFLSLPQCSPADRLPRWSLRRADWP
FT                 AYSSAAVXSSPLPADVDAAVQQVTEAVVSAAENSVPTTPGSLHRTSVPWWT
FT                 PEIAEAIRERRRALQRHRRHPSVEHLVAFKRLRARARRLIQESKRASWEKY
FT                 VASIGSRASPSKVWSQVRRLFGHRPPAGIPCLSVQGTLCTDPVAVAEHLAD
FT                 HFARTSETAAYGADFRALKERAESHQISFRTRRREPYNVPFTEWEFEGALA
FT                 ACPDTSPGPDRIHSQFLRHLSADSKSQLLALFNRIWLEGVFPSSWRDSIII
FT                 PVIKPGADPQVADSYRPISLTNVPCKLLERLVSRRLMWILEDRGLLAPQQG
FT                 GFRQGRSAIDNLVSLESAIRTAFTRREHLVAVFFDLRKAYDTTWRYHILST
FT                 LYDWGLRGPLPIFIKNFLALRSFRVRVGSCFSSSHCQENGVPQGSVLSVPL
FT                 FLVAXNGLAAAVGSSVSTSLYADDFCMYFSSTSIGVAERRLQXAIRKAQSW
FT                 AFAHGFQFSASKTRVMHFCRRRAVHPEPELYLAGDLLXVEETHRFLGMLFD
FT                 DRLTWVPHLRQLKRKCWRHLNILRCLSHTVWGASRPTLLQLYKALIQSRLD
FT                 YGCIVYDSAAPSALQALDPILHCGVRLATGAFRTSPVTSLLVEAGVLPLRF
FT                 RRQHLLASYVARVQASPFHPNRRLLFPDAALPIPPRRPRSGYPISVRARXL
FT                 LSSLASYPLPTTFHYSFRTPPWSIPRLQLRLDLSRASKASVSPIHLRRQFL
FT                 QLLXSFRAAEAVYTDGSIVDGRAGYAFLHDDHVEQHSLPRESSIFSAELVA
FT                 ILRALQHLKACPRGSFVICTDSLSGLQAIDQCFSRHPXVRSIQDTVHSLCR
FT                 SGRSVVFVWTPGHVGIPGNEHVDRLAKQATMAPPLDIGVTEPDVKLVLHRK
FT                 VREAWSAEWATANAPNKLRAVKLSTALWKSSLRPIRRESVVLCRLRIGHTW
FT                 LTHGYLLRREAPPVCRCGVVLTVAHLLMDCPLLADLRQSFNIPDALPLVLG
FT                 DDASMANAVLSFIRAAGFYDSI"
XX
SQ   Sequence 6012 BP; 1110 A; 1849 C; 1559 G; 1433 T; 61 other;
     cccctcaggg gctcagcatt aatttgctga gtacgggctt ggcgaacccg gggtcctgag        60
     ccgtgggctg tgtcgcgcca acagtccgct acaccgtaag ctctgtgcgt gcttcaacga       120
     ccatcgttcg gcgcgacggt ggaacgttgt acgtttcaga gcccggggat cttggcttaa       180
     tcgcccgggt cgcgaggacg gtacaaacct ctataaaaaa aaacctcaat ctcaaggtgt       240
     gctacgtgcc gaggagatgc atggctgttg aggttgaaca gtcgctagcg agcaacctct       300
     gaggaacctg ccgcacctca gttgtataag gcttacccag gcaagcgggg ctctgcctgg       360
     gtggacctct tttccctagc tgctcgtggg acgaaaatga aacgagcaat taatagcgtg       420
     ggcggtcgca aaaacgccgt ttctaagcgt ggaaagtcng agtttaacgc nacggcatac       480
     gaccctaaga cgttcccttc cctngccacg ccatgggagg aacgcagggc cttacgccgn       540
     tcggagccgt actcgccgcg atacctngtt tttnnccgna ctgatggaga ntccttcncg       600
     tccaccaagc cncagttctt cgtcgacnac ctcgaggaca agtntggtga ggtggcgtca       660
     ttctcgaaga tgaggagtgg ggccgttctg atacagacgg cgtccccggc ccagtccagg       720
     gcattactgg cctgcgacag gctgggtgat atcccggtga gtgtcacgcc ccacaagncc       780
     ctnaatatgg tccaaggtct catctaccac cgagacctnt tgtcccagnc cgatgaagag       840
     ctgcgngcaa acctggagcg cngaggtgtt cacttcgtca ggcgtgtnta taggggacca       900
     aaagataaca gggttgccac cggtgcnttc atcctggcct tcgaaggcga tacactgccc       960
     gagaaggtca aggtaatgat ctaccggtgc gacgtcaagc cgtacgtccc gccccctatg      1020
     nggtgcttcn ggtgctggaa gttcgggcat atgtcctccc ggtgcacttc cagcccnacg      1080
     tgcagggaat gtgggcgncc acctcacccg gacgccccat gcaccccacc tcccgtctgt      1140
     gtgaactgcg ggcagcntca cccgccgtgc tcnccggact gcacngttct acacagggaa      1200
     cggaaaatta tggaaatcaa gaccctggac cggctgncgt ncnatgaggc gagnaagaaa      1260
     tacgagcggc tccacccggt naacatgaan acctcttttg ccgcagtaac gtcgtccccg      1320
     cgcactacgg gtacgacacc taccaaggtg tcgcctcctc ctgtgggccc taggggccgt      1380
     aaatctncca ctgccccctc gtcgggtggg ggcnncnctc catctgctgc tncagcacct      1440
     gtcgtggggg caacttcccc ccaaccatcg gggacaccag tccccacccc ccagccggag      1500
     aagaaacagc ttcccccggc ccctctcgct cggaaggggt ccctcgggac gctcccttcc      1560
     ggggattccc agggtgcgcc aggggatccc agcctttggc tgaaggatcc gaaaactgct      1620
     ggccgaaggg cttccggctc ttcgacggtc cctgatgccg cttccgggaa gccctcccag      1680
     cccttaacac caaagggcca gcgagaggga acaaagaaga cgaagaagaa gaaggacaag      1740
     annaaggacn cttcagtggc tcgaaaggaa cgctcnctca catcttcggc ctctgaagac      1800
     gaggtggaga tcctcgcgtc ccccgaggat ctcgccttcc taggatcgcc agaacccatg      1860
     gttctcgatc ctgcggattc tgcggagttg gcagcaggtg cccctgctga ataaccattt      1920
     caccccttaa attatggcta ttcagcacgc tgcaaaagag atcttgcagt ggaattgcgg      1980
     cggttttttc cgccatctgg ctgagctgcg gcaattactc tgccgcttcc ctgcgatctg      2040
     tctagccatg caggaaacgt ggttccccgt cgagaggacc ccagccctcc gaggctatcg      2100
     gggctatttt aaaaaccgaa ccgtctacga cagagtttcc ggcggcgtct gtgtctatgt      2160
     ccacgcctct gtccccagtg ctgctgtgcc tcttcaaacg cctctagagg cagtcgctgt      2220
     tcggctccgg gtattacaag attttaccgt ctgctctgtc taccttccac cagatgatgc      2280
     cgtctctccc gtagacctcg ctgccttggt cgcccaactt cccccaccct ttcttctttt      2340
     gggggatttc aacgcccacc acactctgtg gggtggcgca cagacctcgg cccggggtag      2400
     ggatgttgag tctctcctgt cagagcagaa tctctgcctt ctcaacaccg gtgctcctac      2460
     ccactttagc acagcgcatg gtacttattc tgcaatagac ctgtctgtct gcagccctgg      2520
     cctccttcca catctcacct ggagggtcca tgacgacctg tgtggcagcg accattttcc      2580
     tatcttcctg tcgctcccac agtgttcgcc tgccgaccgt ctgcctcgct ggtccctccg      2640
     tagggctgac tggccagctt attcctcagc tgctgtgatn tcctctcccc ttccggctga      2700
     tgttgatgcc gccgttcagc aggtcacaga ggccgtcgtt tctgcagccg aaaactctgt      2760
     ccccaccacg cccggttcgc tccatcgtac gtcggtgccc tggtggacac cggagatcgc      2820
     tgaggccatc cgggaacgtc ggcgagcact acagcgccac cgacgccacc cttctgtcga      2880
     acatctcgta gccttcaagc gtctccgggc acgggcccgg cgactgatac aagaaagtaa      2940
     gagagcctcc tgggagaagt acgtcgcctc cattggttcc cgcgcttctc cttccaaggt      3000
     gtggtcgcaa gttcgacgcc tcttcgggca ccgcccaccg gcgggaattc cgtgcctcag      3060
     cgttcagggt acgctctgta ctgaccctgt cgccgtcgct gagcacctgg cagatcattt      3120
     tgcacgcacc tcagagactg ctgcttatgg tgcagacttt cgcgccctta aagagcgagc      3180
     agagagccat cagatttcnt ttcgaacgcg acgtcgggaa ccatacaacg tcccatttac      3240
     tgagtgggag tttgaaggtg cccttgctgc atgcccggat acctcccctg gacccgatcg      3300
     cattcacagt cagttcctcc gacacctatc agcggactcc aagagccaac ttctcgccct      3360
     gtttaatcgc atatggcttg agggtgtttt tccgtcctcc tggcgggata gcattatcat      3420
     tccggtgatt aagcctgggg cagatccgca ggtggctgat agttaccgcc cgatcagcct      3480
     caccaacgtt ccatgcaagc tcctcgaacg gttggtgagt cggaggctca tgtggatcct      3540
     cgaggaccgg ggactcttgg cgccacaaca gggtgggttc cgtcaaggcc gctccgctat      3600
     cgacaatctc gtgtcactgg agtcggccat ccgtacagca tttactcgcc gcgaacacct      3660
     ggttgccgtn ttctttgacc tgcggaaagc gtacgacacc acctggcgct atcatatcct      3720
     gtctacgctg tacgactggg gcttacgggg tccacttcct atattcatta agaacttcct      3780
     ggcgttgcgt tcttttcgtg ttcgtgttgg ttcttgtttc agctcatctc attgtcaaga      3840
     gaacggagtc ccacagggtt ccgttctcag tgtcccttta tttttagtcg ccatnaacgg      3900
     tcttgcggcg gccgtggggt catcggtntc cacntccttg tatgccgatg acttctgcat      3960
     gtattttagc tccaccagca tcggcgttgc tgaacgtcgg ttgcagntag ccattcgaaa      4020
     ggcgcagtcg tgggcgtttg cccacggttt tcagttctct gcgtcgaaaa cccgngtgat      4080
     gcatttctgc cgacgtcggg cagtacaccc ggaacccgaa ctttatttag ctggagacct      4140
     gctacangtc gaagagacac acagatttct aggcatgttg ttcgacgacc gtctcacctg      4200
     ggtgccgcac cttcgccagc tgaaacgaaa gtgctggcga cacctcaaca tcctgcgctg      4260
     tctcagccac actgtttggg gagcctcacg cccaacgctc ctgcaacttt acaaggccct      4320
     cattcagtcg cgcctagact atggctgcat agtctacgat tcggccgcgc cttcagcact      4380
     gcaggcgttg gacccaattt tacactgtgg tgtccgtttg gcgacggggg cttttcgcac      4440
     aagccctgtg acaagcctcc tcgtcgaagc tggggtcctc ccgctgcggt tccgcaggca      4500
     acacctgcta gcttcntacg ttgcccgtgt tcaggcctcg cccttccacc cgaaccgccg      4560
     gctccttttt ccagacgctg cactccctat ccctccacga cggcccaggt cgggttaccc      4620
     gatctcggtc cgtgctcgtn cccttctttc gtccctcgca tcctatccac tccctaccac      4680
     nttccactat tcctttcgaa cccctccttg gtccattcct cgtttgcagc tccgtctgga      4740
     tctgtcccgt gcgtcgaagg cctcagtttc cccnatacat ctccgtcgcc agtttctgca      4800
     actcctcgan tcgttccgtg ccgcagaagc cgtctacaca gatggttcca tagtagatgg      4860
     ccgtgctggg tatgcgtttc tncatgacga ccacgtggaa cagcattctc tgccccgtga      4920
     gagtagcatt ttctccgccg agctggtcgc cattctcagg gctctgcaac acctcaaagc      4980
     ctgccccagg gggtcatttg tcatctgtac tgactccctg agtggcttac aagcgatcga      5040
     ccagtgtttc tctcgccacc cantagtgcg gtcgatccag gatactgttc actctctatg      5100
     ccgatcgggc cgttctgtgg tctttgtgtg gaccccgggc cacgtcggca taccagggaa      5160
     tgaacatgtt gatcgattgg ccaagcaggc cactatggca ccacctctcg atattggcgt      5220
     cacggaaccg gatgttaaac tggtgttgca ccggaaggtg cgcgaggctt ggagcgccga      5280
     gtgggctacg gcgaatgcac cgaacaagct tcgggcagtg aagctgtcca cagccctgtg      5340
     gaaatcttca ctgcggccga tccgccgaga gtcggttgtc ctctgccgcc tccgtattgg      5400
     gcacacgtgg ttaacccacg gctatctcct tcgccgtgag gctccacccg tgtgtcgatg      5460
     tggcgtagtg ttgacagtgg cccatctttt gatggactgt ccgcttttag ccgacttgcg      5520
     gcaatctttt aatatcccag acgcgctacc cttagtttta ggcgacgacg cctctatggc      5580
     taacgcagtt ttaagtttta tccgcgcngc tggtttttac gactctatct agtggtgggt      5640
     gctgtggcct gatatcttag gccaccacca atccagcgct tttaacggct ttttcagacc      5700
     cttatgtgaa atacctaggg gttcttagtg tgtgcagtat ggctggctca tcctgtttta      5760
     tctttgtgat cagccagcca tggtactctg ctgtccagtt ttagttgagt tcctgacttt      5820
     gttttaccaa ttgtgtgtgt cttcgttttg tattgtcagc gacttgtcca ttgtcagcct      5880
     gtcccttttg tgcgttncca ttttcagagc tttgttttac tttttacgtt cttgacagtg      5940
     gactctcagc taggaacagg ggactgatga cctagctgtt tagtcccctc aaaaaccaac      6000
     aacaacaaca ac                                                          6012
//
ID   Nimb-7_LMi  repbase;    DNA;    INV; 5415 BP.
XX
AC   .
XX
DT   02-MAR-2014 (Rel. 19.11, Created)
DT   02-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5415
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3166-3166 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           43..1389
FT                 /product="Nimb-7_LMi_1p"
FT                 /translation="MSTKPLFFVENIEDKFGEVDGMSKMRSGSILITTSSP
FT                 AQSRALLACDKLGDVPVTITPHKSLNMVQGIIFHRDLLLQSDDELRKNLER
FT                 RGVQFIRRIYRGPKDNRVATGAFILAFEGDSLPEKVKVMIYRCDVKPYVPP
FT                 PMRCFKCWRFGHMSSRCDANPTCRECGRASHPDVPCTPPPVCVNCGQHHSP
FT                 CSPHCTVLQKERKIMEYKTLDRLSYSEAKRKYEKIHPVSMKSTYATATLPS
FT                 PPMVKSPXVPSTILGPPAQQLPAAPLMSGGASSSVAPKVPTLGATSTKPQG
FT                 TTVPIPEPENQQPSLAPPARKGSLDALPPKVSHAGTVDTSEWLKKPLPAGR
FT                 RASRASSVPETAAEKPSQQERPKDKRERKKKRSKKTEHQVASEPPQQTSAS
FT                 EDEIEILTSPEDLAFAESPDAMDVEALPPPSATANNLADSTAPSQSACPSD
FT                 QEPL"
FT   CDS           1365..5060
FT                 /product="Nimb-7_LMi_2p"
FT                 /translation="MSQRPGASMIMQWNCGGFFRHLSELQQLLCRFPAFCI
FT                 ALQETWFPAQRTPALRGYRGYYNNRSIYNRVSGGVCVYVLATVPSAAVPLN
FT                 TTLEAVAVRIRAIEEFTICSLYLPPDVVVSPADLTALVAQLPQPFLLLGDF
FT                 NAHHPLWGGTETTGRGRDLENLLTQLDICVLNSGAPTHFSVAHGSFSAIDL
FT                 SICSPSLLPHLSWKVHDDLCGSDHFPLLLSLSQFHPAGRLPRWSLHRADWH
FT                 GYTSTAVATTPLPDNIDMAVQQLTEDIISAAEANVPTTTGSLRRKSVPWWT
FT                 REIADAIRERRRALQRHRRHPSIEHLIAFKRLRARARRLIQQSKQDCWERY
FT                 VATIGSCASTSQVWSQVRRLFGYRPPSGIPSLRVEGGLCTDPTVIAELMAG
FT                 HFARCSATAAYSAEFRALKERVERRQLSFRTRRREVYNAPFSEWEFQTALA
FT                 ASPNTSPGPDRIHSQFVRHLSADFQRQLLALYNRLWTEGIFPSQWRRSTIV
FT                 PVMKPGADPSDAGSYRPISLTNVLCKILERMVSRRLMWLLEDRGLLAPQQG
FT                 GFRQGRSTLDNLVSLESAIRTAFTRREHLVAVFFDLRKAYDTTWRHHILST
FT                 LYEWGLRGPLPMFIQNFLSLRSFQVRVGTSLSSPHVLENGVPQGSVLSVPL
FT                 FLIAINGLAAAVGTSVSSSLFADDFCLYFSSSSIGVTERRLQGAIRKAQSW
FT                 ASEHGFQFSAQKTRVMHFCRRRVAHPDPELYLNDEPLRVEETHRFLGMLFD
FT                 ARLTWIPHLRQLKQKCWRHLNILRCLSHTGWGAARPTLLHLYKALIQSRLD
FT                 YGCLVYDSAAPTALQILDPVHHSGIRLATGAFRTSPVTSLLAEAGVPPLRF
FT                 RRQQLMASYVARIHAVPHHPNRRLLFPAVALPSPRRRPRSGLPIAVRVRSL
FT                 LSSLESLPIPLTFQYRSRTPPWVIPRLQLRLDLSRDSKASVAPTTLRQQFQ
FT                 ALLDSYRGAEFVYTDGSLVDGHAGYAYTHGRHIEKRSLPCGSSVFTAELVA
FT                 IWRALEHLRACPGESVVICTDSLSGLQALNQCFPKHPLVRSIQEAVYRLGT
FT                 SGRTVVFLWTPGHIGITGNERVDQLAKEATTSTMLEIGLQERDLRTVLNQK
FT                 VLGLWNTEWAESNAPNKLRAVKPSTAMWRSSLRASRRESVVLCRLRIGHTW
FT                 LTHGHLLRREGPPVCRCGALLTVVHILLYCPLLAALRQSFSLPDSLPSVLG
FT                 DNASLATTVLHFIRASGFYHSI"
XX
SQ   Sequence 5415 BP; 1121 A; 1610 C; 1302 G; 1381 T; 1 other;
     ccccgatacc tggtgtgcag tcgaacagat ggcgaatcgt ttatgtcgac taagcctctg        60
     ttttttgtcg agaacattga agacaagttt ggcgaggtag acggaatgtc aaagatgaga       120
     tccgggtcga ttctgataac gacgtcgtcc ccagcccagt cacgggcact gcttgcctgt       180
     gacaagctgg gtgacgttcc cgttaccatc acaccacata aaagtttgaa catggtccag       240
     ggtattatct ttcatcgtga tctcttactt cagtccgatg acgaactccg gaagaacttg       300
     gagaggcgag gagtgcagtt tattcggcgc atatacaggg gtccgaagga caacagggtc       360
     gccaccggtg ccttcatctt ggcttttgag ggtgattcat tgcccgaaaa agtcaaggtg       420
     atgatctacc ggtgtgacgt caaaccctac gttcctcccc ctatgcgctg ctttaagtgc       480
     tggaggtttg gccatatgtc atcccgctgc gatgccaacc ccacctgtcg ggagtgcgga       540
     cgtgcgtctc atccagacgt cccatgtacc ccgcctccag tttgtgttaa ctgtggccag       600
     caccactctc cctgctcgcc acactgcaca gttctccaaa aagagagaaa aataatggag       660
     tacaagaccc tggacaggct ttcatattcc gaggccaagc gcaaatatga aaagattcac       720
     cctgtcagca tgaagtctac gtatgctaca gcaacattac cgtctcctcc tatggtaaag       780
     tcacctcmgg ttccatctac catcctgggc cctccagccc aacagttacc agctgccccc       840
     ttaatgtcag ggggcgcctc ctcttctgtt gcccccaagg tccctacttt gggagcaaca       900
     agtacaaaac cacaggggac aacggtcccc atccctgagc cagagaacca acaaccatct       960
     ctggctcctc ctgcaaggaa gggctccctc gatgcccttc ctcctaaggt ctctcacgct      1020
     ggtacagtag ataccagtga gtggctgaaa aagccactac ctgctggtcg cagggcctcg      1080
     agggcatcct ccgtccccga gactgcggca gaaaagccct cccagcagga gagaccgaaa      1140
     gacaagcggg aaaggaagaa aaagaggtcc aaaaagacag aacaccaggt ggcttctgag      1200
     ccaccacaac aaacgtcagc ctcagaggac gaaatagaaa ttctcacgtc ccctgaggac      1260
     ttggcttttg ctgagtcccc agacgcgatg gacgttgagg ctctgcctcc gccatcagcg      1320
     acggcaaaca atcttgcaga ctccactgca ccatcccaat ctgcatgtcc cagcgaccag      1380
     gagcctctat gatcatgcag tggaactgtg gcggtttttt ccgccatttg tccgaattgc      1440
     agcaattgtt gtgccgattt ccagcattct gtatagccct gcaggaaact tggttccctg      1500
     cacagaggac cccagccctt cgtggctatc ggggctatta caacaatcgt tccatctata      1560
     acagggtatc tggcggagtt tgtgtctatg ttcttgcaac cgtccccagc gctgctgtgc      1620
     ctctcaacac gaccctggag gcagtggctg ttcgaatccg ggcaatagag gaatttacca      1680
     tctgttccct ttaccttccc ccggatgttg ttgtctctcc tgctgacctc actgcattgg      1740
     ttgcccaatt accacaaccg ttcctcctct tgggtgattt caatgcccac caccctctgt      1800
     ggggtggaac tgagaccacg ggccgtggta gagaccttga gaaccttctc acacagcttg      1860
     acatttgcgt cctgaacagt ggggcaccca cacacttcag cgtggcacat ggctctttct      1920
     ccgccatcga cctgtccatt tgtagcccga gtctccttcc gcatttatct tggaaggtcc      1980
     atgacgacct ttgtgggagc gaccactttc ctctcctttt gtcgctctca caatttcacc      2040
     ctgcaggacg cctgccccgg tggtccctcc atagggctga ctggcacggc tatacctcta      2100
     cagctgtggc tactactcca ttgccagata acatcgatat ggcagtccaa caactaactg      2160
     aggacattat ttccgccgct gaagcgaatg tcccgactac cacaggctca cttcggcgca      2220
     agtcggtgcc ttggtggacg cgggagatcg ctgacgctat ccgggagcgg cgacgggcgc      2280
     ttcaacgcca ccggcgccac cccagcattg aacatctgat cgcttttaag cgtctccggg      2340
     cccgagcccg gcgactgatc caacagagta agcaggactg ttgggagcga tatgtagcca      2400
     ccataggctc ctgcgcctcc acttctcaag tgtggtcgca ggtacggcgc ctcttcgggt      2460
     accgcccacc aagcggaatc ccgtcactcc gagttgaagg tggtctttgt actgacccga      2520
     cggttattgc cgagctcatg gcagggcatt ttgcacgttg ctctgcgacc gcagcctaca      2580
     gtgcggaatt tcgcgccctc aaagagcggg ttgagcggag gcaattgtcc ttccgcacac      2640
     gtcgacggga agtatacaat gccccattta gtgagtggga gttccagact gctctagctg      2700
     catcccccaa tacctctcct ggcccggacc gtattcacag ccagttcgtc cgtcacctct      2760
     cagcggactt tcaacggcag ctactcgccc tttataatcg tctctggaca gaaggcattt      2820
     tcccgtcaca atggcggaga agtactatcg tcccagtgat gaaaccaggc gcagatccgt      2880
     ccgacgctgg gagctaccgc cccatcagtc tcaccaacgt tctgtgtaag atcctcgaac      2940
     gtatggtgag tcgacggctt atgtggctac tggaggatcg aggtctcctg gctccacaac      3000
     agggaggctt ccgtcagggc cgttccactc tagacaatct cgtgtccctg gaatcagcca      3060
     tacgtaccgc ttttactcgc cgagaacacc ttgtcgcagt cttttttgac ctccgtaagg      3120
     cttatgatac aacctggcgt catcacattc tctctacact ttatgaatgg ggcttacgtg      3180
     gccccctccc aatgttcata cagaacttcc tgtcgctacg ctcttttcag gttcgggttg      3240
     gcacctctct tagctcccct catgttttag agaacggcgt cccacagggc tccgttctaa      3300
     gtgtaccgtt atttttgatt gctattaacg gactagccgc ggcagtagga acgtctgtct      3360
     cttcctcctt gtttgccgac gacttttgcc tttacttcag ctccagcagc attggcgtca      3420
     cggaacggcg gctgcaggga gccatccgaa aggcccagtc ttgggcctct gagcatggtt      3480
     tccaattttc ggcgcagaaa acccgcgtca tgcacttttg tcgccgtcgg gtagctcatc      3540
     cggaccctga gctatatttg aatgatgaac cccttcgcgt tgaggagaca caccgcttcc      3600
     taggcatgct tttcgatgcc cggctgacct ggataccgca tcttcgccaa ctaaaacaaa      3660
     aatgctggcg acacttaaac atcctccgct gcctcagcca cacaggttgg ggagctgctc      3720
     gccccactct actgcacctg tataaggcac ttatccagtc acgcctggat tatggctgcc      3780
     ttgtgtatga ttctgcagct ccaactgcac tgcagatctt ggatccggtc catcacagtg      3840
     gcatccgttt agcaacaggg gccttccgta caagtcctgt gacaagcctt cttgctgagg      3900
     ctggggttcc ccccctgcga ttcagaaggc aacagctaat ggcttcttat gttgcccgta      3960
     ttcatgccgt acctcaccac ccgaatcgca ggctcctctt cccagctgtc gcactccctt      4020
     ccccacgacg acggccgcgg tcgggcctcc cgattgcggt ccgtgttcgt tcccttcttt      4080
     cttctctaga gtcccttcct atccctctca cctttcagta ccgttctcgt actcctcctt      4140
     gggtcattcc tcgcctccag cttcggttgg acttgtcccg agactccaaa gcctctgttg      4200
     caccaacgac tctccgtcaa cagtttcagg cccttctcga ttcgtaccgt ggcgctgaat      4260
     ttgtatacac cgatggttcc ctagtcgatg gccatgctgg gtatgcctat acccacggcc      4320
     ggcatattga aaaacgttca ttgccctgtg ggagtagtgt gtttacggcg gaacttgtcg      4380
     ccatttggcg ggcccttgaa catctcagag cctgccccgg ggagtctgtg gttatctgta      4440
     ctgactccct gagtggtttg caagccctta atcagtgctt tccgaaacat cctttggtac      4500
     ggtccattca ggaagctgta tacagactag gtacatctgg tcgcactgtg gtcttccttt      4560
     ggactccagg ccacattggc ataacaggaa atgaacgtgt cgaccaactg gcgaaggagg      4620
     ctactacctc aaccatgctg gaaatcggtc tccaggagag ggatctccgg acggtgctca      4680
     atcagaaggt attgggcctt tggaatactg agtgggctga atcgaacgca ccgaataagc      4740
     tccgtgctgt taagccctct acggcaatgt ggaggtcctc cctgcgagcc tctcgtaggg      4800
     agtccgttgt actctgccga ctgcgcattg gccatacgtg gttaacgcac ggccacctct      4860
     tgcgtcgaga gggcccacca gtttgccgtt gtggcgccct gctgaccgtg gtccacatac      4920
     tgttgtattg tccgctttta gccgctttgc ggcagtcctt tagcctacca gattcgctgc      4980
     cttcagtttt aggtgacaat gcctccttgg ctactactgt tttacatttt attcgcgcat      5040
     ctggtttcta ccattccatt taatggaagg cgcttctgcc tgattcaaag accctcattt      5100
     ttacactgtt tttaagttat tgatagcctc taccttttcg gttgaggtgg ttttttagtg      5160
     cgtacagcat ggctcgctca tctgttttta tcctagtgat cagccagcca ttgcattctg      5220
     ctgtgaaatt gtacttttat cccttttgtg cactcctctg tgtatcagtg aagtgtttct      5280
     cttcgttcta cactcaagga attctctcat ccttgttctc tctgtgtttt cgttccgtca      5340
     catgttacat cactgcttgg aacaggggac tgatgacctt gtagtttggt cccctataaa      5400
     caacaacaac aacaa                                                       5415
//
ID   Nimb-8_LMi  repbase;    DNA;    INV; 5304 BP.
XX
AC   .
XX
DT   03-MAR-2014 (Rel. 19.11, Created)
DT   03-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5304
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3167-3167 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           475..1311
FT                 /product="Nimb-8_LMi_1p"
FT                 /translation="MRRVDGVLVKSESFILTFNTPKLPDHVKAGFLRLNVR
FT                 PYYPNPMRCFKCQHFGHTTLGCNGQQTCGKCGEAAHEGDDCSPPFKCVNCS
FT                 GDHPVWSRSCAVYLEERKVQEIKTSKRISYGEAKKMYKAMQPPSFTTSFAA
FT                 VLQTPAPKTDASTQTAVASVGTNTCSCQCTCNASDVSASIVPPKTGRSVEA
FT                 PKKQAKVKKDKEKAELKIVSKETDQVDVIMLDVPTESAPEPMEFDVSLGQS
FT                 TRPKTDLPQGQTSRPKGDPPPVTGSQSRQKERVKVKPP"
FT   CDS           1318..5007
FT                 /product="Nimb-8_LMi_2p"
FT                 /translation="MAPILQWNLQGFRTHVEELRLLSQGRPLCICLQETNF
FT                 KPSDTPEIRGYVLHRKDDVSGERARGGVAVFINTAYHSEPISLNTNLQAVA
FT                 VSVHMRHRLTICSLYLPPHDALNEEALEDLLTQLPHPFILCGDFNAHNVLW
FT                 GSVTTCPRGRAVERLLLSSSANFLNTGQSTHFCTATGSFSAIDLSLCSPAL
FT                 THSTQWEVDNDLHGSDHFPIWIHLPERVEPERQPPRWILRRADWTLYSRLA
FT                 EFEPHDNVQEWVDNITAKIHYAATVSIPRSSGQPKRHPVPWWNDECRSAIR
FT                 IRRAALRRFKCRPTAENLANFRVARAKCRRIIRESKKRSWQQFLNSINRST
FT                 KSSIVWEAIRRISGRGSRCPVAAVMGNGSLQTNPRDIAQTMAVYFATVTAT
FT                 ASYNPAFQRHRVAAERGILDFRSSNDEQYNCPFSMWELDSALSVARDTSPG
FT                 HDGIHYSMLRHLTRQNKEILLNLFNFIWASGQFPDSWREAILIPILKPGKD
FT                 RTSPSSYRSVALTSCVGKTLERMINRRLVWMLESRQLLSRFQCGFRRYRST
FT                 FDNLAFLEAAIQQAFLRRQHLLGIFFDLEKAYDTTWRHLILRQLHEWGFRG
FT                 CLPRFIQSFLSPRYFRYRVGDALSDRFEQENGVPQGSVLSVTLFAIAINSI
FT                 TSVVKSPVQCSLFVDDFSVFCSSSNLATTTRQLQLTLRRLDEWAGTTGFKF
FT                 STEKSVCVLFNRSRTVFNLPELQMKGSVLHFKDTVRFLGLTFDSKLTWLPH
FT                 LKDLKTRCLKALAILKCLSHTSWGADRTCLLRFYRAFVRSRLDYGCAVYGS
FT                 ARPSYLKMLDAVHHAGIRLATGAFRTSPIPSLCAEAAEPPLHIRRRLLMVC
FT                 QAYKTLSTPFTPAYLTVARPPMERLFHTRQRATRPYGIRTKDFLLEMGVAD
FT                 FNVLHRGWGRVPPWPLQRPRIILDLASFRKEQTSDFTYQSLFLTVLDRHHD
FT                 FTVLYTDGSKHGDSVGCSIVFPDRVVKIRLPENYSVFSAELHAILKALEQL
FT                 RRAQGKRFLLCSDSLSALQSLNELYPSETLLQHIHDELSFLQRRGKEVSFC
FT                 WVPGHVGIQGNEDADQAAKEACSAPDVTRCPIPLRDITSLLRLRSLQLWEE
FT                 DWLSVTHNKLRYLKPTVRPWRSSCRPLRRDEVAITRLRIGHCPLTHGFLLR
FT                 REEPPMCDACGVQLTVRHILIECDLYHAQRVAANLGADLPSILGNDEASVS
FT                 KVLKFCDLSQLWPKLLGWRF"
XX
SQ   Sequence 5304 BP; 1249 A; 1335 C; 1309 G; 1411 T; 0 other;
     agaagtttta aacctcccag tgggatgggt gtaccactgg ggggtactaa cacccgatcc        60
     aaaaagaggg ctcgcttagg cagtcctcca gatggcacta gaagaaacgt gtcggtatag       120
     taacagagca catggtgcta accaaaatgt atttatgatt attaaaagga aagaggttca       180
     ttcgaaaagg tgtcaccgtt ctacatacaa aagggtcttg agggcatagc aggtgaactg       240
     aaatctgtga aaaggttgcg taacggtact ttgttggttg agacagctac ctcccaacag       300
     gccgtcaatc ttcaaaacgc caagcaactt ggagaatatg ccatcgaaac ggaactccac       360
     aatacattaa attatagtaa gggcgtggtt acatgccgcg accttgttga aattcctatt       420
     gaggaactga aagctgaatg ggcctccgaa ggtattgtgg atgttcagaa cattatgagg       480
     agggtggatg gcgtgttggt caagtcggag tccttcatcc tgaccttcaa cactccgaag       540
     ctgccagacc atgttaaagc aggttttctt agattaaatg tacggcctta ttaccccaac       600
     ccaatgcgct gcttcaaatg ccagcacttt gggcacacca ccttgggttg taatggacag       660
     caaacctgcg gaaagtgtgg tgaggccgct catgaagggg acgactgctc gccgcccttt       720
     aagtgcgtca actgttctgg ggaccacccc gtctggagta gatcctgtgc tgtgtacctt       780
     gaagaacgta aggtacagga gataaagaca tcaaagcgca tttcgtatgg tgaggcgaaa       840
     aagatgtaca aggccatgca accgccgtca tttaccacct cttttgcggc ggttcttcaa       900
     acgccagctc caaaaactga tgcgtctacg caaactgcag tcgctagtgt cggcactaac       960
     acctgctcct gccagtgcac atgcaatgcg tcagatgttt cagcatctat agtccccccc      1020
     aagacaggcc gctcagtgga agcgcccaag aagcaagcaa aggtcaagaa ggacaaggaa      1080
     aaggctgagt tgaagattgt aagcaaagag acagaccagg ttgacgtcat tatgcttgac      1140
     gtgccaaccg aatctgctcc agagcccatg gagtttgatg tttctctggg gcaatcaact      1200
     cgccccaaga ctgaccttcc acaggggcaa acatctcgcc ccaagggtga tcctccaccc      1260
     gttacgggct cccagtcccg tcagaaagag agggtgaaag ttaaaccacc ttgatagatg      1320
     gctcccatat tgcaatggaa cttgcaggga tttaggacac atgtggagga actacggtta      1380
     ttatctcagg gacgaccact gtgtatctgt ctccaggaga cgaatttcaa gccttctgat      1440
     acccctgaga tacgtggata cgttctccac agaaaggacg acgttagtgg agagagagct      1500
     agagggggag tggctgtttt catcaacaca gcctaccact ctgaacccat ctctctcaac      1560
     actaacctac aagcagttgc agtgtcagtg catatgcgcc accgactgac tatatgctcc      1620
     ctgtatttgc caccacatga cgcacttaat gaagaggctc tggaagacct tcttacacag      1680
     ctcccccacc cattcatcct ctgtggtgat tttaatgcac ataatgtgct ttggggctcc      1740
     gtcaccacct gccccagggg tagagcagtt gagaggcttc tcttgtcttc aagtgccaac      1800
     ttcctaaata caggtcagag cacacacttc tgcactgcaa cagggtcgtt ctctgccatt      1860
     gacctgtcgc tctgctctcc agcccttacc cactctactc aatgggaagt ggacaacgac      1920
     ctgcatggta gtgatcactt ccccatttgg attcaccttc cagagagagt agaacccgaa      1980
     agacagccgc ctcgatggat tcttcgcagg gcagactgga cactttacag tcgacttgcc      2040
     gaattcgaac cccatgacaa cgtccaggaa tgggtggata atattaccgc taagatccac      2100
     tacgctgcca ctgtatccat tccgcggtca tcagggcaac caaaacggca tccagtccct      2160
     tggtggaatg atgaatgccg ttctgccatt aggatcagac gggcggctct gcgtcggttc      2220
     aagtgtagac cgactgcaga aaacctcgca aactttcggg tggcaagggc caagtgtcgc      2280
     cggattattc gagagagcaa gaagaggtcg tggcaacagt tcctaaattc cattaaccgt      2340
     tcaactaaga gttccattgt atgggaggcc attaggagga tatcagggag aggtagcagg      2400
     tgtccagtag ctgctgtgat gggtaatggt agtctccaga ccaacccacg agacattgcc      2460
     cagaccatgg cggtctattt tgctacagta actgccaccg ccagttacaa tccagctttc      2520
     cagcgccacc gggtggctgc tgagagggga attttggact tccggtccag caatgatgaa      2580
     cagtataact gccccttttc catgtgggag ctggattctg cattgtctgt ggcccgtgac      2640
     acatccccag gtcacgatgg tatccactac agcatgttac gacacctcac aaggcagaac      2700
     aaagaaatcc tcctcaatct ttttaatttc atctgggcgt caggccagtt ccctgactca      2760
     tggagagagg ccattttaat tcctatttta aaacccggga aagaccgcac cagcccaagt      2820
     agttatcgta gtgttgctct cactagctgc gtgggaaaga ccttagagcg gatgattaac      2880
     cgccgccttg tctggatgct ggaatccagg cagctcctca gccgctttca gtgtgggttc      2940
     aggagatatc gctccacctt tgataacctg gccttcctgg aggcggctat acaacaggct      3000
     ttcctgcgcc ggcaacacct tttgggtata ttttttgatc ttgagaaggc ctatgatact      3060
     acttggcggc atcttatcct taggcagctc cacgaatggg gttttcgtgg ttgtcttccc      3120
     cgttttattc agtccttcct ttcccctcgt tattttagat atcgggtcgg tgacgccctc      3180
     tctgatcgat ttgagcagga gaatggagtc cctcagggta gtgttttaag tgtgaccttg      3240
     tttgctatag ccattaacag tattacttct gtcgtgaaaa gtcctgtcca gtgttctcta      3300
     tttgtggatg acttctctgt cttttgctct tcatccaatc tggcaacgac tacacgtcag      3360
     ttgcagttaa ctcttcggcg gttggatgaa tgggcaggga cgactggttt taagttttca      3420
     accgagaagt ctgtgtgtgt tctttttaac cgttcacgta ctgtttttaa tctacctgaa      3480
     ctgcagatga agggctctgt tctgcatttt aaagacacag tgaggtttct gggcctcacg      3540
     ttcgattcta aactcacatg gttgccccac cttaaggact tgaagacacg gtgcctcaaa      3600
     gcactggcga ttttaaagtg tcttagccac acttcttggg gagcagacag aacctgtttg      3660
     ctccggtttt acagagcctt tgtgcgatct cgtctcgatt atgggtgcgc agtgtatggg      3720
     tctgcacgcc cctcttattt aaagatgttg gacgcggtac accatgcagg gattcggctg      3780
     gccactgggg catttaggac gagccccata ccaagtcttt gtgctgaggc tgcggagccg      3840
     ccactgcaca tcaggcgacg gctactcatg gtgtgccagg catataaaac gctgtccaca      3900
     cctttcacac cggcatacct cactgttgct cggcctccga tggaaaggct gtttcatact      3960
     cgtcaaagag cgacaagacc atacgggatt cgcacaaagg atttcctttt agaaatggga      4020
     gtggctgatt ttaatgtttt acatagaggt tggggcaggg tcccaccttg gcctctccag      4080
     aggcccagaa ttattttaga cctggcgagt tttaggaagg aacaaacttc ggattttact      4140
     tatcagtcgt tgtttttaac tgttttagat aggcatcacg atttcacagt tctgtacact      4200
     gatggatcca agcatgggga ctcagtcgga tgttccattg tgttccccga ccgtgttgtc      4260
     aagattcgcc tccccgagaa ttactctgtt ttctctgcag agctccatgc gatcttgaag      4320
     gcactagagc agttacgtcg tgctcagggc aaacgatttc ttctctgctc tgattctctg      4380
     agtgcactgc agtcgttgaa cgagctatat ccatctgaga ccttactgca gcatatacac      4440
     gacgaactgt ccttccttca acgtcgcggg aaggaggtgt cgttttgctg ggtgccggga      4500
     cacgtgggca ttcagggtaa tgaagatgcc gatcaggctg ccaaagaggc ctgcagcgcc      4560
     cctgatgtga cacggtgccc tattcccttg cgggatatta cttccctgtt gcggctgcgg      4620
     tccctgcagt tgtgggagga ggactggctc tcagtgactc acaataagct gcgttacctg      4680
     aagcccactg tccgtccgtg gcgttcctcc tgccgacctc ttaggcggga tgaagtcgcc      4740
     attacacgcc tccgcattgg gcactgtcca ctgacgcacg gtttcctact ccgacgtgag      4800
     gagcccccga tgtgtgatgc ctgtggcgtg cagcttactg tccgccacat tttaattgag      4860
     tgtgatttat atcatgcaca gagggttgcg gcgaatcttg gtgcagattt gccctctatt      4920
     ttaggtaatg acgaagcgag tgtgagcaaa gttttaaaat tttgtgattt gtcccaactc      4980
     tggcctaagc ttttaggctg gaggttttaa tatgttgcag ggtggctggc tcaccctttt      5040
     ttatcgctgt ggtcagccag ccatggtcct ctgcttagtt gttttaactc tttctccagc      5100
     ttttccaatg gggtactttt cccatcttca tctctaatgt tcaccttttg tatttcactt      5160
     cagctgcacg tgttacttgc tggattgctc tcctttattt tatcagtttc tttactgttc      5220
     acacttcttg gttcttactt ctttaatttg atagggcgct gaagacctag atgtcgagcg      5280
     cccaaaaccc cctattcatc catc                                             5304
//
ID   Nimb-9_LMi  repbase;    DNA;    INV; 5328 BP.
XX
AC   .
XX
DT   04-MAR-2014 (Rel. 19.11, Created)
DT   04-MAR-2014 (Rel. 19.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Nimb; Non-LTR Retrotransposon; Transposable Element; Nimb-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5328
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3168-3168 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           8..1207
FT                 /product="Nimb-9_LMi_1p"
FT                 /translation="MSKLRSGSLLIKTVSAAQSEALLACTTLGDIPVTILP
FT                 HKSLNMVQGVIFHRDXLLQTDEELRANLERRGVHFVRRVQRGPKDNRVDTG
FT                 AFILAFEGDTLPEKVKIMIYRCDVKPYIPPPMRCFRCMRFGHMSSRCTAVP
FT                 VCGDCGRPLHEGSPCVPPPVCVNCHQHHSSRSPDCPMFKKEKKIQEYKSLE
FT                 RLTYPEARSKYERLHPVQMATTFATTLSSNLSPSPSRSHLPLHPVPTPPPL
FT                 TSPSPVAPVALPLCPAPSQPEKCTPSPAPAGDGAPSQGLPSRRSPDRRSST
FT                 SSRPSDSQSASSKVARSSSVPDLTDKSSLSGTGPPRPAREKEKEKKREEEE
FT                 EEKKKKKKPKLQDKAPPVPPEVPTVLSQLAHPIEPEADQLFMDVVPSSLVT
FT                 DADKAA"
FT   CDS           1360..4959
FT                 /product="Nimb-9_LMi_2p"
FT                 /translation="MNAHSPTLRGFRAFCRNRVGPLQASGGVCTLVRTDIV
FT                 STWIPLQTPLEAVAVRVHLDTPLTICNLYLPPDRPPTLAALVALLQQLPPP
FT                 YLILGDFNAHHPLWGSAYTSSRGRLIDQFLADHDLCLLNDGSPTHFSAAHG
FT                 TFSAIDLSLTSPPLLPLFHWSAHDDLCDSDHFPLILSLPSHLPRARVSRWV
FT                 FRRANWPLYTSQVVFPSSPSGCIDDIISXMXNMITQAANSAVPRSTGPPTR
FT                 RPVPWWNATVAAAIRERRRALQHLKRHPSLAGLIHFKRLRARARYLIKQSK
FT                 RACWEHFVSSLGSSVPLTXVWAMLRSVPLTXVWAMLRSIQGSWRPSSVPGL
FT                 ALPDGVCTEPSVLAEHLATHFANVSATTSYPATFLLKKHQAETFKLGFTSH
FT                 QVEPYNEPFTDWELSLALSSSRDSAPGPDDIHNQLLKHLNPSQRQFLLQVY
FT                 NRIWLQGVFPSQWRESIVVPALKPGKDPSSLDSYRPISLTNVPCKLLERMV
FT                 ARRLCWVLESRGLLSPYQCGFREGRSPIDHLLRLETAIRQAFSKRXHLVAV
FT                 FFDLHKAYDTAWRRHILRSLHDWGLRGSLPIFIRQFLSHRLFRVRVGSSFS
FT                 SPRIQENGVPQGSVLSVTLFLIAINGLVSSVGSLVTPALYVDDFCIWYSSY
FT                 SVASAERQLQSAIRRASTWATSHGFQFSSSKTRVMHFCRRTTVHPDPELFL
FT                 GTQRLEVVAQHRFLGLLFDKKLTWVPHIRHLKISCMRKLNALRFLAHSSWG
FT                 ADRTTILRIYRALILSRLDYGCQVYGSAAPSALKLLDPVHHYGVRLATGAF
FT                 RTSPVDSLLVEAGICPLQVRRHQLLASYAIAIRQYPAHPAYQVLFAYEGLR
FT                 PPDTRPRAGLPVGLRLASLCRDFHFPSLDCAPRFTARTPPWMVPRPLIRAD
FT                 LFQGPKALISPMVFRRLVRPVLEEFQGASIFYTDGSKTAGHSGYAFTSPVG
FT                 AECHSLPEACSVFTAELMAIYRALCFIKQTAVERGLICVDSMSSLQAIDRC
FT                 FPSHPLVISIHDLLADLHRAACSVTFLWVPSHVGITGNEQADRLARSAITR
FT                 CPPPFLIPGADLRVQIRSLLHSSWDSSWKATAPSNKLRTVKDTTAAWSSSL
FT                 RPSRRESTVLCRLRIGHCRLTHGFLLRNDNPPHCDCGAVQSVXHILVECPL
FT                 HLTLRGDYGLPPSLPLVLADDPRMIDRVLAFLREGRFYSQL"
XX
SQ   Sequence 5328 BP; 1034 A; 1593 C; 1233 G; 1460 T; 8 other;
     ggaatccatg agtaaactta gatctggctc attgcttatt aaaacagtct cggcagccca        60
     gtctgaggct ttgctcgcct gcaccactct tggcgacatc ccagtgacaa tactcccgca       120
     caaatctctg aatatggtac agggtgtaat attccaccgg gaccncctcc ttcaaactga       180
     tgaggagctt agggccaacc tcgagcggcg tggtgtacat tttgttcgcc gcgttcagag       240
     gggacctaaa gacaaccgcg tcgatactgg ggcctttatc ttggccttcg agggggacac       300
     actcccagag aaggtcaaga taatgatata tcgatgtgat gtgaagccct acattccacc       360
     tcccatgcga tgttttcgat gcatgcggtt tggccatatg tcctctcgct gcacagcagt       420
     ccccgtatgc ggtgattgtg gacgcccact acatgagggg agcccctgtg ttcctccgcc       480
     ggtgtgcgtc aactgtcatc aacaccactc ttcacggtcg ccagattgcc ctatgttcaa       540
     gaaagaaaag aaaatacaag agtacaaatc actggagcgt ttgacgtacc ctgaggcccg       600
     cagtaagtat gaacgtctgc atcctgtgca gatggcgact accttcgcta cgacgttatc       660
     ttctaacctt tcaccctccc cttcccgctc ccatctcccc ctacatcccg ttcccacccc       720
     cccccccctc acatctccct ctcctgtagc tcccgtagcc ctccctctgt gtcccgcccc       780
     ttcccagccg gagaagtgca ccccttctcc ggcgcctgcc ggtgacggcg ccccatctca       840
     gggccttccg tcccggcgtt ccccagatcg gagatcttcg acctccagtc ggccatcgga       900
     ctcgcagtcg gcgagttcaa aggtcgcccg atcttcgtca gtaccagacc ttactgacaa       960
     aagttctctc tctgggactg gtcctccccg tcccgcaaga gagaaagaga aggagaagaa      1020
     gagagaggag gaggaggagg agaagaagaa gaagaagaaa ccaaagttgc aagataaagc      1080
     ccctccggta ccaccggagg tgccgactgt gctttcgcaa ctcgctcatc ccattgagcc      1140
     tgaggctgat cagctattta tggatgtcgt cccttcttct ttggtgacgg acgctgacaa      1200
     agcagcgtga cggacgttac cccgttcgct tcccgcctag atcctcgtga tgtgatcatc      1260
     caatggaatt gtaatggcta ctaccgtcac ctcttggaga ttaaacagct aatctctctt      1320
     tcttctgcgg cctgtgtcgt cctgcaggaa tcgcggttta tgaatgcaca ttcaccgacc      1380
     ctccgtgggt tccgtgcctt ttgtcggaac cgggttggtc ccctccaggc gtctggtggg      1440
     gtttgtacat tggtccggac agatattgtc agtacctgga ttcctctcca aactccattg      1500
     gaagcggttg ctgtccgggt tcacttggac accccgttaa ccatttgcaa cctctacctt      1560
     ccccctgaca ggccacctac actcgctgcc ctagttgccc tccttcagca actcccccct      1620
     ccttacctca tccttgggga cttcaatgcc caccatcctt tgtggggcag tgcttatacg      1680
     tctagccggg gccgcctcat agaccagttt cttgctgacc acgacctgtg ccttctcaac      1740
     gatggttccc caacccattt tagtgccgct cacggcacct tttctgccat agacctctct      1800
     ctcacttctc ctcctctcct ccctttattt cactggtcgg cgcatgacga cctctgcgat      1860
     agcgaccact ttccgttgat cctttcactt ccctcacacc taccacgagc cagggtatcc      1920
     cgttgggttt tccgtcgtgc taattggccg ctatatacat cccaggttgt tttcccatct      1980
     tccccctcag gctgtattga tgatattata agccanatgn ccaacatgat tactcaagct      2040
     gccaactccg ctgttccccg gtcgacaggc cctcctactc gccggccggt cccgtggtgg      2100
     aacgcaactg ttgccgcagc cattcgcgag cgccgtaggg ccttgcaaca tcttaagcgc      2160
     cacccatccc tcgctggtct catacatttc aaacgtctgc gtgccagagc tcgttactta      2220
     atcaaacaaa gtaagcgggc atgctgggag cattttgtct cctccttggg ctcttctgtc      2280
     cctctgacan gagtgtgggc tatgctccga tctgtccctc tgacangagt gtgggctatg      2340
     ctccgatcta tccaaggtag ctggcggccg tcttccgtcc ctggccttgc cctgcctgat      2400
     ggggtctgta cagagccatc tgtccttgca gaacatcttg caactcactt cgccaatgta      2460
     tcagcgacaa cttcatatcc ggcgaccttt ctccttaaga aacaccaggc cgaaaccttc      2520
     aaattaggtt ttacttctca ccaggtggaa ccatataacg aaccttttac tgactgggaa      2580
     ctatcgctgg ccctctcctc ttctcgtgat tcagcacctg gccccgacga tatccataat      2640
     caattgctga aacacctcaa cccttcacaa cgacaatttc tcctccaagt ttataaccgt      2700
     atttggcttc aaggggtctt cccctcccag tggagggaga gtattgtggt ccctgccctc      2760
     aagcctggca aggacccgtc gtcgctggac agttatcggc caataagcct gacaaatgtc      2820
     ccctgtaaat tacttgaaag gatggtagcc cgcagattat gctgggttct tgaatcccgg      2880
     ggacttctct caccttacca gtgcgggttc cgggagggac gatcccctat tgaccattta      2940
     cttcgactgg agacggcgat cagacaggcc ttctctaaac gacancatct tgttgcagtc      3000
     ttcttcgatc ttcataaggc gtacgacact gcttggcgtc gtcatatttt acgttctctt      3060
     catgactggg gcctcagagg ctccttacca atttttatcc gtcagttttt atcccaccgc      3120
     ctgttccgtg tcagagttgg ctcttcattc agctcccctc gaatacagga gaacggcgtc      3180
     ccccagggct cagtgttgag tgttacactc tttctaatcg ccatcaatgg gttggtgagc      3240
     tctgttgggt cgctggtaac cccggcactg tatgtcgacg acttttgcat atggtacagc      3300
     tcctactcag tagcctctgc tgaacgtcag ctccagagcg ccattcggcg ggcttcaacg      3360
     tgggctacgt cccatggttt ccagttttcc tcgtcaaaaa cgagggtgat gcatttctgt      3420
     cgtcgtacta cagttcaccc tgatccagaa ctgttcttgg gtactcagcg cctggaagtt      3480
     gtagcacagc atcgttttct gggtcttctc ttcgacaaaa aattgacttg ggtgccccat      3540
     attcgtcacc taaagattag ttgtatgagg aaacttaatg ccctacgttt ccttgctcat      3600
     tcatcttggg gtgcagaccg aacaactatc cttcgtatct atcgggctct aatcttgtcc      3660
     cgattggact atgggtgtca agtttatggc tcggcagctc cttctgccct gaaattatta      3720
     gatccggtac accattatgg tgtacgcttg gctacaggtg cgttccggac tagcccggtc      3780
     gacagtctcc ttgttgaggc gggaatctgc cctcttcagg tcaggcggca tcagcttctg      3840
     gcgtcttatg ccatcgccat ccggcaatat cctgctcatc ccgcttacca ggttcttttt      3900
     gcatatgaag ggcttcgacc ccctgatacc cggccgcggg cgggattgcc cgtcggactg      3960
     cggcttgcct ctctttgccg agatttccac ttcccttccc tggattgcgc cccccgtttc      4020
     actgcacgca cacccccgtg gatggtaccg cgaccactaa ttcgggcgga tctcttccag      4080
     ggcccaaaag ctttaatttc ccccatggtc tttcggcgtt tggtgcgccc agtactagaa      4140
     gagtttcagg gagcctctat tttctacact gatggctcga aaactgcggg ccactccgga      4200
     tatgcgttta catctcccgt tggggcggaa tgccattctc tgccagaggc atgcagtgtg      4260
     ttcacggcag agctgatggc gatttataga gccctctgtt ttattaaaca gactgccgtg      4320
     gaacgtggtt taatctgtgt tgactccatg agcagtctgc aggccattga tcgatgtttc      4380
     ccctcccatc ctttggttat ttccatccac gatctccttg ctgacctcca tcgtgctgcc      4440
     tgctccgtta cctttctctg ggtgccaagc catgttggta ttacagggaa tgaacaggct      4500
     gaccggttgg ctcgatcggc aattactcgc tgcccacctc cctttctaat tccgggtgcg      4560
     gatctgcggg tgcagatcag atctttgctt cactcctcat gggatagcag ctggaaagct      4620
     actgcccctt ccaataaact ccgcaccgtc aaagatacga ctgcagcttg gagttcatct      4680
     ttacgccctt cccggagaga atcgactgtc ctctgtcgcc tccgtattgg acattgcagg      4740
     ctgacccatg gatttctttt acgcaatgac aatccaccgc attgtgattg tggagccgta      4800
     caatccgtgn ctcatattct ggttgaatgt cctctccatt tgacacttcg tggcgactat      4860
     ggcctaccgc cttcgttgcc tctagttttg gcggatgacc cacggatgat tgatcgcgtc      4920
     cttgccttcc tccgtgaagg taggttttat tctcagctct aggactcgct tggtcggggt      4980
     gagtgggttt gtgactcttg ccccccccag tcccccactc ttttactttt taacgtcgtt      5040
     ttatttctcc ctactctgaa gctgtgatct gttgaccact gtgccgttag taacttgtgg      5100
     tttagaaggt tgtggtcgct tccggagcta tgggngcgga cactgtagct ttcgctgccc      5160
     taagttggtt ttagtcttgt cggtgagatg attttaattc ctagtggaat ggtcttttag      5220
     ctttcccaca tttttcgttg ggttctgtgg catgtacaat tcggagttaa agggactgat      5280
     gacctcgttg tttggtccct catttccatc aacacacaca cacacaca                   5328
//
ID   NINJA_I     repbase;    DNA;    INV; 6011 BP.
XX
AC   D83207;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   03-JAN-2012 (Rel. 17.01, Last updated, Version 2)
XX
DE   LTR retrotransposon NINJA, internal sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; internal portion; PAO subgroup; NINJA_I.
XX
NM   NINJA_I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6011
RA   Ogura K., Takechi S., Nakayama T. and Yamamoto M.;
RT   "Molecular structure of the transposable element ninja in
RT   Drosophila simulans.";
RL   Genes Genet. Syst 71(1), 1-8 (1996).
XX
RN   [2]
RP   1-6011
RA   Yamamoto T.M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (23-JAN-1996). Masa-Toshi
RL   Yamamoto, Kyoto Institute of Technology, Applied Biology;
RL   Matugasaki, Sakyo, Kyoto, Kyoto 606, Japan
RL   (E-mail:yamamoto@ipc.kit.ac.jp, Tel:075-724-7781,
RL   Fax:075-724-7760).
XX
DR   GenBank; D83207; Positions     318    6328.
XX
CC   This is the internal sequence of LTR retrotransposon NINJA,
CC   its LTR is reported in Repbase as NINJA_LTR. It contains two
CC   open reading frames (ORFs), and the pol region is divided between
CC   two ORFs in contrast to the organization of other
CC   retrotransposons.
CC   An alignment analysis of the reverse transcriptase sequences
CC   suggested that the NINJA element is the first Drosophila
CC   retrotransposon
CC   belonging to the PAO subgroup [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           352..4173
FT                 /product="NINJA_I_1p"
FT                 /translation="MQHSPRKSARLNGGEATPITTASQQPASSGAGTRTRV
FT                 NITAASIPCPATTVTTVASQPRSTAVTAASSVPEVNQPLVLELMERIAALE
FT                 RELEKARSLESVSTANCAPIAVGPSAVGANSGASGRPPFWSGQPIPTSNGE
FT                 ALHNGVGSVPYNGDGASGAACTLPPSSSGPPLLTTSNYFVEPLCATGTAQP
FT                 AHGLVLPGVSIHNAATASPLVGSYAATTPSGIQGAYGPRKLPDLPIFGGQP
FT                 EEWPIFSCAFVETTRAYNCTDLENNQRLLKALKDEAREAVKALLIHPGNVS
FT                 AVMEQLRFRFGRPEQLIRSQLNNVREVQPISEHNLAKIIPFATRVSNLAAF
FT                 LQSAKAEQHLGNPTLMEELVAKLPTSKRVDWARHAATIAPFPTVVHFSAWL
FT                 QEYANVVCTVLDVEGKEPRRRLLHASVDHNECDQQDDRHGGCSICGGQHGI
FT                 LNCRKFIAASPQERWSNVKRHRLCFNCLRSGHTARSCYTQGECQINGCRRE
FT                 HHRLLHGADEERRPLQRGGFRRHEGNQQPTVSRRSPARRPSLRDGHKDQER
FT                 NRQPAVPSNSLERGAPREAGAPMQRNLSCVDAEGGRLLFRILPVTLYGAGR
FT                 KVDTYALLDEGSSVTMIDDELRRDLGVQGERRQLNIKWFGGKATREPTNVV
FT                 SLKISGVGKPTRHVLRNVYAVSSLSLPMQTLSRRDVQGVHRDARLPMKPYS
FT                 NVVPKLLIGLDHGHLGLPLRTRRFAREGPYAAVTELGWVVFGPVSGQPTTP
FT                 SPRSSLLAVSVDDAMEKMVEDYFDMENFGVKTAPPVAASDDVRAQRILEDT
FT                 TVKVGRRYQTGLLWKDDHVVLPPSYEMAYRRLVNVEKKMKRNKPLAQEYDR
FT                 IIKDYVSKGYARRLQPEEVAVRSDRLWYLPHFSVENPNKPGKVRLVFDAAA
FT                 KVGGTSLNSELDKGPQHYKPLPAVLFHFREGAVGVCGDIKEMFHQVLIRPE
FT                 DRCSQRFLWRDGDDERDPDVYEMNVMTFGAACSPSAAHYVKTMNALKYRDS
FT                 DPRAVKAITDYHYVDDYVDSFATESEAISVSTRVKEIHKDAGFELCQFSSS
FT                 SPTVETALGPGRVKSVGWGEAEEKILGMRWQVATDDFRFNVEYHRVPSSVL
FT                 SGDRVPTKREYLSLVMSTFDPLGFLCCLMVTAKLLLREIWRQKIQWDEPLP
FT                 EELSKAFAIWRKEMDAVGQFRCPRHYFGRGAVRAVELHVFVDASQAAFAAV
FT                 AYWRVTYEDDDVQVSFVSAKTKCAPMRTMTIPRLELQAAVLGTRLMNTVKQ
FT                 EHSVVITDLLLWT"
FT   CDS           4154..5917
FT                 /product="NINJA_I_2p"
FT                 /translation="RTCCYGLDSKTVLRWIGSTHRRYKQFVGNRVAEILES
FT                 SKVSQWRWVPTADNAADDATRSQKGVDLSQESRWLRGPAFLRQPAASWPGP
FT                 EEGTERVPDAPDEEEMPSEFALVAADDFVIPFQRFSSFSRLVRTTAWVLRF
FT                 ARWCRKQRNELEEYGLTAAECKAAENLLVRQAQLESFPDEMRSAETGQDVG
FT                 GSSDIRGLVPYLDEDGILRAYGRIDAALCMPYSARRPVLLSHRHSLTELIV
FT                 RDFHDRMKHQNVDATIAEIRTKFWVTKMRRVMRKSHLIVQRVQVAATATDA
FT                 ADNGTPSGRQTGCGWMAIQIHRTGLLWATAGDCVPSQGEALGRLVYVFDDK
FT                 GDSPGVAHDLSTDSCIIAIRNFVCRRGPVYRLRNDNGKNFVGADREARRFG
FT                 DVFEMEKLQSELSSRSIEWVFNCPANPSEGGVWERMVQCVKRVLRHTLKEV
FT                 APRDHVLESFLIEAENIVNSRPLTHLPVDADQEAPLTPNDLLKGVANLPDT
FT                 PGLDAECPRRVLRESSGGLLACSETVSGGGGSWSTCLRLCAARSGAAERSP
FT                 STRVIWSSSAILPWPDESGARASWRRSTAELMESSDALRCA"
XX
SQ   Sequence 6011 BP; 1432 A; 1469 C; 1950 G; 1160 T; 0 other;
     ctttttattc gcagtcctag gcgactgcag gggcaacttg cgctggaatg acggtttaga        60
     cggccagcta gagagttgcc ggagctggag tgacggttta gacggccagc caggatttgt       120
     gtgagcgcag ccagcgctac gtaccggcag aggagtcgca gccagcgaca gtggcgcgca       180
     gtcagcgaca tagagggacg cagcctgcgt cgaacgccgg tacgaacgag tcgcagccag       240
     cgacaaggag acgcaagaag cgtcatttgt ggagaccgca gccagcggtc agaaggcgtc       300
     agagacgcaa ttttggaagc gcagaggcgc caccatttgg agctggggaa gatgcagcat       360
     tccccaagga agagtgcccg gctgaacgga ggggaagcca cccctataac aacagcgagt       420
     cagcagccag ccagtagtgg agcaggaact cggacgcggg tgaacatcac ggcggcgtcg       480
     attccttgcc cggccactac ggtgactaca gtagcttccc aacccagaag tactgctgtc       540
     acagctgcga gttcagtacc ggaggtgaac cagcccctcg tgttggaact catggagagg       600
     atcgcagcgt tggagaggga gctggagaag gctagatccc tggaaagtgt gagcaccgcc       660
     aattgcgcgc caatcgcagt tggcccaagc gcagttggcg ccaacagtgg agcgtcgggg       720
     cggccgccat tttggagcgg ccagccaata cccacatcta acggagaggc cttacataac       780
     ggggtcgggt cggtgccata caacggtgac ggtgcgagcg gtgcggcctg cacgctgccg       840
     ccatcttcga gtgggccgcc attgctaacg actagcaact attttgtgga gccactgtgt       900
     gcaacaggca ctgcgcagcc agcgcatgga ctcgtgctac cgggcgtgag catccacaat       960
     gcggcaacag catcgccact tgtcggatcc tacgccgcga cgacgccgag tggaatccag      1020
     ggagcatatg ggccaaggaa gcttccggac ttgcctatat ttggagggca gcccgaggag      1080
     tggccgatct tcagctgtgc gttcgtggag acgacccgag cgtacaactg cacggacctg      1140
     gagaacaacc agaggttgtt gaaggcgctg aaggatgaag cgcgcgaggc agtgaaggcg      1200
     ctattgattc atccagggaa tgtcagcgcc gtgatggagc agctgcgctt taggttcggc      1260
     cgaccggagc agcttatccg cagccagctc aacaacgtgc gagaggtgca gccaatttcg      1320
     gagcacaatt tggcgaagat cattcccttc gcaactcgag tgagtaacct cgcggccttc      1380
     ttgcagtcag cgaaagcgga gcaacacctg gggaacccaa ccctcatgga ggagcttgtg      1440
     gccaagctgc caacgagcaa gcgagtggac tgggccaggc atgctgcaac gattgcgccc      1500
     tttcccactg tagtccactt cagcgcgtgg ctacaggagt acgcaaacgt ggtgtgcacg      1560
     gttttggacg tcgagggaaa ggagccgagg cgccgacttc tacatgcgag cgtcgaccat      1620
     aatgaatgcg atcaacagga tgatcggcat ggaggttgtt ccatctgtgg aggacagcat      1680
     ggaatattga attgcagaaa atttattgca gcttcgccac aggaaaggtg gagcaatgtg      1740
     aagaggcatc ggctctgctt caattgcctg cgaagcgggc acacggctag atcctgctat      1800
     acgcaaggtg agtgccagat taatggatgc cgaagggagc atcaccgtct gctacatggt      1860
     gcggacgagg agcgaaggcc gctgcagcga ggtggcttca gacgccacga agggaaccag      1920
     cagccaacag tttccagacg cagcccggcc aggaggcctt cgctacgaga tggtcacaag      1980
     gaccaggaga ggaaccggca accagccgtt cccagcaaca gcctggagag aggagccccg      2040
     cgtgaagcgg gagcgcccat gcagaggaat ttgagctgcg ttgacgccga aggaggccgt      2100
     ctactgttcc gtatactgcc ggttacgctg tacggagcgg ggcgaaaggt ggacacgtat      2160
     gcgctcctag atgagggatc ctccgtcacg atgatcgatg acgaactacg aagggatctt      2220
     ggagtgcaag gagagcgtcg gcagctaaat atcaaatggt ttggaggtaa ggcaaccaga      2280
     gagcctacca acgtggtgag tctgaagata agtggagttg gaaagcccac tcgccatgta      2340
     ttaagaaacg tttatgccgt ttcgagtttg agtttgccga tgcagacatt gagccgacga      2400
     gatgtccagg gcgtgcacag ggatgcgcgt ctgccgatga agccttacag caacgtggtg      2460
     ccgaagctgc tcatcggcct ggatcacgga catctgggat tgccacttag gacgaggcgg      2520
     ttcgctcgag agggaccgta tgcggccgta accgagctgg gctgggttgt gtttgggcct      2580
     gtaagtgggc aaccgaccac gccgtcaccg aggtccagcc tacttgccgt gtcagtggat      2640
     gacgcgatgg agaagatggt ggaggactac ttcgacatgg agaactttgg agtgaagacc      2700
     gcgccgccgg tcgcagccag cgacgatgtt cgggcccaaa ggatactcga agacaccacg      2760
     gtgaaagtgg ggcgccgcta ccagacggga ttactctgga aggacgacca cgttgtgctg      2820
     ccaccgagct atgagatggc gtacaggagg ctggtcaacg tcgagaagaa gatgaagcgc      2880
     aacaagccgt tggcgcagga atacgatcgg atcataaagg attacgtgtc taaaggatac      2940
     gcgaggaggt tgcagccgga ggaggtcgcg gtaaggagcg atcgtctatg gtatttgcca      3000
     cattttagtg tcgaaaaccc aaacaagccc ggcaaggtac ggcttgtgtt tgatgctgca      3060
     gccaaagttg gaggaacctc gctaaactcg gagctggaca aagggcctca gcactataag      3120
     cctttgccag ctgtgctctt tcatttcaga gagggagccg tcggagtctg cggtgacatc      3180
     aaggagatgt tccaccaagt gctgatccga cccgaggata gatgttccca acgattcctc      3240
     tggagagatg gcgacgacga gagagatccg gatgtctatg agatgaacgt aatgacgttt      3300
     ggagcagcct gctcgccgag cgctgcgcat tacgtgaaga ctatgaatgc cctgaagtat      3360
     cgggattcgg atccgagagc ggtcaaggcc atcaccgact accattatgt cgatgactat      3420
     gtggacagtt tcgctacaga gagcgaggct atcagcgtat ctacccgagt gaaggagata      3480
     cacaaggatg ctggattcga attatgccag ttttcatcca gctcacccac cgtggagacg      3540
     gctttaggac ctggtcgagt caagagcgtc ggatggggtg aggctgaaga gaagatcctc      3600
     ggaatgcgtt ggcaagtagc aacagatgac ttcagattca acgtggagta tcatcgagtg      3660
     ccaagcagcg tcctgagtgg agatcgagtc cctacgaaga gggaatattt gagcctggtg      3720
     atgtcaacgt ttgatcccct gggattcctg tgctgcctca tggttacagc gaagctcttg      3780
     ctgcgagaga tttggaggca gaagatccag tgggacgaac cactaccgga ggagttaagc      3840
     aaagcctttg cgatttggcg caaagagatg gacgccgtgg gacagttccg atgtccgcgc      3900
     cattattttg ggcgtggagc agtccgggcc gtagagttgc acgtcttcgt ggatgccagt      3960
     caggcagcat tcgcggcggt ggcctattgg agggtcacat atgaggacga cgacgtgcag      4020
     gtgagcttcg tgagtgcgaa gacgaagtgt gccccaatga gaacgatgac gatcccacgg      4080
     ctggagctac aggcagcagt tcttggaacc aggctgatga acactgtcaa gcaggagcac      4140
     agtgtggtca taacggacct gttgttatgg acttgactct aagacggtgc tgagatggat      4200
     cggcagcacc caccgccggt ataagcagtt tgttggcaac cgagtggcgg agattttgga      4260
     gtcgtcgaag gtttcccaat ggagatgggt gcctacagcc gacaatgcgg ctgatgatgc      4320
     gacgcggtcc cagaaaggag tcgaccttag ccaggaatca aggtggctaa gaggacctgc      4380
     atttttgagg cagccagcag ccagctggcc ggggcctgag gaaggaactg agcgtgttcc      4440
     agatgcccct gatgaagaag agatgcccag tgagtttgca ttagttgcgg cagacgattt      4500
     tgttattccg tttcagagat tctcgagctt cagtcgcctg gtgaggacca cagcctgggt      4560
     cctacggttc gcgcgctggt gccgcaaaca gcgaaacgag ctcgaggaat acggccttac      4620
     tgcagcagaa tgtaaggccg cggagaacct gttggtcagg caggcacaat tggagtcgtt      4680
     ccccgacgag atgaggtcgg cggaaactgg acaggacgtc ggtggatcga gcgacattcg      4740
     aggattggtg ccctacctag acgaggacgg gattctgcga gcttacggca gaattgatgc      4800
     cgcactgtgc atgccgtaca gtgcgaggag acccgtatta ctgtcacaca ggcacagtct      4860
     gacagagctg attgtgagag acttccacga caggatgaag catcaaaatg tggatgctac      4920
     gattgcggag atccggacaa agttctgggt cacaaagatg agacgtgtga tgcggaagag      4980
     tcatctcatc gtgcaacgag tgcaagttgc agcgaccgcg accgatgccg ccgataatgg      5040
     gaccccatcc ggaagacaga ctggatgcgg gtggatggcc attcaaatac acaggactgg      5100
     actactttgg gccactgctg gtgactgtgt cccgtcacaa ggagaagcgt tgggtcgcct      5160
     tgtttacgtg tttgacgaca agggcgattc acctggagtg gcgcatgacc tgtcgacgga      5220
     ttcctgcata attgcgatca ggaacttcgt ctgccgtaga gggccagtat atagactgcg      5280
     caacgataac ggcaagaact tcgtgggagc tgacagggaa gccaggcgct ttggtgacgt      5340
     attcgagatg gagaagcttc agagtgagtt gtcaagcaga agcattgaat gggtttttaa      5400
     ttgcccagcg aacccgtctg agggcggagt ttgggagcgc atggtgcagt gcgtcaagag      5460
     agtactgcgt cataccctga aggaagttgc accgagggac catgtattgg agagtttcct      5520
     gattgaggcg gagaatattg taaactcgcg tccgctcacc cacttgcctg tggatgcgga      5580
     ccaggaggcg ccgttgacgc caaacgatct actcaaggga gtagccaatc tgccggatac      5640
     gcctggattg gatgcggagt gcccaaggag ggttctacga gaaagcagtg gaggattgct      5700
     cgcctgctcc gagaccgttt ctggaggagg tgggtcctgg agtacctgcc tacgcttgtg      5760
     cgccgcgaga agtggtgccg ccgaacggag cccatccacc agggtgatat ggtcttcgtc      5820
     tgcgatcctg ccttggcccg acgagagtgg cgcaagggca tcgtggagga gatctacagc      5880
     ggagctgatg gagtcgtcag acgcgctaag gtgcgcgtga acgacaacgg cctacctagg      5940
     acaatgatgc gacccgtctc taaacttgca gttttggatt tgagtgaagc ggttcttcac      6000
     ggggtcgggg a                                                           6011
//
ID   NINJA_LTR   repbase;    DNA;    INV; 317 BP.
XX
AC   D83207;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   LTR from retrotransposon NINJA.
XX
KW   LTR Retrotransposon; Transposable Element; NINJA; NINJA_LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-317
RA   Ogura K., Takechi S., Nakayama T. and Yamamoto M.;
RT   "Molecular structure of the transposable element ninja in
RT   Drosophila simulans.";
RL   Genes Genet. Syst 71(1), 1-8 (1996).
XX
RN   [2]
RP   1-317
RA   Yamamoto T.M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (23-JAN-1996). Masa-Toshi
RL   Yamamoto, Kyoto Institute of Technology, Applied Biology;
RL   Matugasaki, Sakyo, Kyoto, Kyoto 606, Japan
RL   (E-mail:yamamoto@ipc.kit.ac.jp, Tel:075-724-7781,
RL   Fax:075-724-7760).
XX
DR   GenBank; D83207; Positions       1     317.
XX
CC   Long terminal repeat from retrotransposon NINJA (its internal
CC   sequence is reported in Repbase as NINJA_I. LTRs from GenBank
CC   sequence D83207 are identical. It may indicate that NINJA is an
CC   active retrotransposon.
XX
SQ   Sequence 317 BP; 86 A; 60 C; 74 G; 97 T; 0 other;
     tgtcgcggat cgaatattgt tatcgatagg ctagtatttt gagaagtccg aatgtggacg        60
     gatttgtaag cccatatgtg tctgggcaca ttgttttcgc cattgtaaat tgccgggaaa       120
     atttagcttt tcattgtcgt gcaagagttg gaggacacac tgcggtgagc taataagtta       180
     agttagttac aattgtaaaa cattaattct tccagaataa aacgctttct actaccacga       240
     attagtctgc cctttctttc gggaaccaat gcgtggagta gccgtttaag gcaactcctt       300
     gtgacgcacg acgacaa                                                      317
//
ID   nMar-10_Hmel repbase;    DNA;    INV; 600 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner; nMar-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-600
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 600 BP; 193 A; 98 C; 84 G; 222 T; 3 other;
     cacctatccc ccgatttaca cggtactttt tttacacgtt ttcgctttta cacggttttc        60
     caaataagtt tttttttgtt tttatcgcac tcgtgacata aatcgctgct tggctcaata       120
     tgaagaagtt tacaaagatc ttacaaaaaa ttcgaagcaa ttgttaataa ccgattaaaa       180
     aaccatctct cataatgtaa atatttctgc ttcaaacatc gaatcggccc aaataacttc       240
     gatctatgaa agtgaattcg tttcttcgct gcttaaaaaa agaatgagac aaataacttc       300
     gagtgatgaa agataataaa acacctttgg ttttattttt tgttcttctg tttaatgtat       360
     tgtaattnaa taaaaaarag tgtttchgta atatattaca tattttaacc tgtcaatgca       420
     ttttattttt atttctgtgt acacctaaaa atattgaaaa aaatcacaac tgttaaatag       480
     caaaattatg cattttctgc aagcttttcg atttacacgg ttttgacttg aaaattttta       540
     attttcgatt tacacggttt tctcaggaac gtatctaccg tgtaaatcgg gggataggtg       600
//
ID   nMar-11_Hmel repbase;    DNA;    INV; 571 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-11_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-571
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 571 BP; 217 A; 89 C; 87 G; 173 T; 5 other;
     caggcatccc tcgtataaca cggttaattc gtaccgtgct atatcgaaac cgtgttatac        60
     gaaaccaggt ataccatact gtacaccgtg tagtatcgag accttgtctc gtgttatatc       120
     gaaaccgtgt tatacgagac tttgaaatca tacaaataaa ggcaatgcgt accgtgttat       180
     atcgaaacca aatcttaagg tgtaaaattt tatgatagct gaaatttcgt tccaaatact       240
     acataaatga aaaaggaagt taccttgaag tttttattaa gaaaaataaa ttaaattcwa       300
     ttttatgatg aaatacaawa attaaaaaat acaacaataa aatatattca aagactaata       360
     ataataatta catagtataa aacaagtaga aacagcttat tgaacgaaaa aaaagttcaa       420
     atttaaaatg catatttttc aaaatcgtgt tatactaata tcatttcttg yatcgtgtar       480
     tatcgaaacc gtgttatatt agtckcaatt cttggaccgt gtaatatcga aaccgtgttg       540
     tacaagtacc gtgttatacg agggacgcct g                                      571
//
ID   nMar-12_Hmel repbase;    DNA;    INV; 2595 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-12_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2595
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2595 BP; 923 A; 380 C; 394 G; 866 T; 32 other;
     gacatgggcc gtaacgtctt ttaagcataa ccagtgatca ctagtttcgg ggttacgcgt        60
     agctagtttc agaaactagt tatttctgta actagttaca aatgyttcat aagcagttgt       120
     aagtttaata cgattacttt tatagttatg attgaaaacg ttttaggtta aattacaata       180
     tcttgctact aaaatgtaat tatttattaa tttattttat atacaattat ttttatatat       240
     ttttttatat acactttatt atattatata tttttaatat atagaatttt atatagtttt       300
     ttcgctgatc gctctttaat aatatttgat atatttaatt acggagtgaa attaaaattc       360
     caaattaagt gaaaaaaaaa tttacacaca aaatacattc aaaaagaggg aataatttta       420
     cacttacaga atggaaaaag aaatttaaaa atacaaaaaa aannntaaac gcgaaactga       480
     cacgtaatag caaaatantn aggtttaaaa ttggatgaaa cttgagacca aacttgaggt       540
     aaanaccagc tggttatggg ttcgatcccc actcgaggag atgaaatatt tatttaaatt       600
     aatattttca tttcttcgct ntggtgtcna ggtaaagcgc ggagttgagt tctgccactc       660
     aacacgcaat gcctccagaa ttcggcagaa agtggggaac ctagtgtaac agagtgttac       720
     actaggttcc ctctgcctac cctgctgtgt gtgggaaaca gcgtgaagct gatttattta       780
     ttttattttt taaaattgaa agtaagcaca gggtacaata gattaattna tttatttatt       840
     aggaagccaa cgttacatac tacaaaannn ggcntttaaa cttgtancat aaacncagtt       900
     ataaatgtat aactagtact taaattaaaa ttaaatgtta aaattttnnt actgaatata       960
     aannaataat aaataaataa ataaagcctt tattcgctga ccatttcaga atttttgttt      1020
     gcataattaa aataaagtat acannaaaaa tttaaaagac ttaaaattaa aaacatttaa      1080
     aaagtaatta attttagcag cctgcantat tgctatatag ctaaacataa aacaaaaaaa      1140
     aataacaaaa tacaaaacca aaattaagat cttaaaaaaa gttataaaaa ttgtaagctc      1200
     agttatggat tctttattac gtatataaaa tattttttct gttgagcttt atacaaacgt      1260
     aaggaatcat taaaaacatc aaattcagat ttttgcgcta atttattatc aacattcaaa      1320
     gttctattaa gtgatgggtt taggcctcaa ttttttgtag cgaacctcgt ttctcggnnt      1380
     tgnatacatg atcttncatt caatctaagg gtaataatat taagttcacc taaaatcttt      1440
     gaacaatcaa gacantaatt agtgtaaaaa gcaaagatcg gcaatatttc tgcgatggga      1500
     tattttaaca tattataata ttttaataag tcatcgtact tcgtgatctc tggaagataa      1560
     catttttaaa aacttttttg aattcgttct aatcagtttt tatgtgtttc ataatatgga      1620
     ttccagacag ttgaacaata ttctaattga ctcttaatta atgaattaaa taaaataata      1680
     actgaactgg aattcttaaa agtcttagta gatcgaataa aaaatcccaa tgtgcttaag      1740
     atatacaagt gtgaagtgaa cgtcgcaagc cattgtaacc gaacctcttt taataaataa      1800
     taaacattaa gaaagctacg tcacgctaaa caaaaaaaac tcggaattgg ttaaaatcca      1860
     ccgtcgtggc gcagcggcac aagggcgtgg ctgtaacgcg acggttgcgg gttcgatccc      1920
     caatcgagga aattaaatat ttatttacat ttattttttc atttcttcgc actggtgtcg      1980
     aggcagaatt tattttttaa ttatcgatat aaaataataa tcgatcaaat tgcattaatg      2040
     catacatatt aaactactgt cgtctctttt tttcttgcgg aacgtactaa aatagagcaa      2100
     gatgcaacta cataagtgtc aatgtagcta ataaaaataa tatggttttt tcttggaatt      2160
     ttcataaaac tataaataat atagnttaac ttctgcgttt acagtttaga atcgcttttt      2220
     cgtttcattg ggtgtataat acaaaaaagt acgatgtttg tagcttttca atcaaattcg      2280
     cctattctcg tctctntttt tgttgcggta cgtactataa tagagcgaga tacaactgtg      2340
     ctagtgtcga tgtaacttga ttagtgntta ctgcttactc tcatgaaact acgtatgtga      2400
     aataatggct atgtgtacag acacataacc acaacgcaac atgtatgtag tttcgaataa      2460
     ccgcgtagct cacaatcacc gcgtagntcc gaatcatcac aatcactagt ttcgacgaca      2520
     gcccgaaact agttatgccg tgatttggct tgtaagcagt ttctgaaact agtgacgcta      2580
     cgtaacgccc atgtc                                                       2595
//
ID   nMar-13_Hmel repbase;    DNA;    INV; 507 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-13_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-507
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 507 BP; 187 A; 78 C; 65 G; 174 T; 3 other;
     cacctatccc ccgatttaca cggtagatac gttcctgaga aaaacgtgta aatcgaaaat        60
     taaaaatttt caagtcaaaa ccgtgtaaat cgaaaagctt gcagaaaatg cataattttg       120
     ctatttaaca gttgtgtttt ttcaatattt ttaggtgtac accaccaacc agttgtttta       180
     attcaccata actagactgt ttaacaaaag tttaataatt aatttttatt caaattaaaa       240
     tgttttaatt tttttatttt aattaaacct atttggtaaa ctgccatcat ttctctccaa       300
     aatttcycgc atttttccct ctaaatttta ctttaatcac arccgttaat ttataataat       360
     ctaaattatg cactcacttg taatttacga atatggaaaa ttaaatcatt tagtagagtg       420
     cgataaaaac aaaaaaaaay ttatttggaa aaccgtgtaa aagcgaaaac gtgtaaaaaa       480
     agtaccgtgt aaatcggggg ataggtg                                           507
//
ID   nMar-14_Hmel repbase;    DNA;    INV; 1636 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-14_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1636
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1636 BP; 504 A; 297 C; 253 G; 555 T; 27 other;
     cactgccctc caaaagttag ttgaaatgat caataatgta ataaatggga gagaattata        60
     ataaaacaaa ataaaaacat ggcgtcaata tttatttatg aaaatataat caattttgag       120
     tattttaatc aataaaagaa ccatcataac ttttataact ataagttccg gtaaataaac       180
     tgttaaatta ggatatcaaa agttagttga aattgttgaa aaaatatttt taggattgtg       240
     tctttgccaa tatcttatct tttaatattt tgtatgactg ccattattat gtagaactgc       300
     tttaagtcgt ctaggcattg attctacaag attttgtagt gttttgaccg gaatagtcaa       360
     ccatgtttca agaattttat ttttaaacaa atttctgttg catctattgg aaatagggat       420
     cctgcggtct aattcatccc ataaatgttc aatggggtta aggtcgggtg acattgaagg       480
     ccattccagt aaatccactt cgttatcttc aaaatattgt ttagttatcc ttgctgtatg       540
     cttcgggtca ttgtcttgtt gaaacttgaa aatccgacct aaccccattt tttcagcaga       600
     ttgttttaaa ttatcatgga gaatatgaca ataggtctgt gctgtcattc tgccttcaat       660
     waattgcagc tggcccacac catgccaaga aaaacacccc caaagmatta tactcccacc       720
     accaygtttc acagtgagct gcaagtattt gtcgtcgtaa gagttatcat tgcttttgcg       780
     ccatacagtt tgacggcgtc gatttccaaa tagttcgaac ttcgattcat ygctaaagay       840
     tactctcttc caaaagtcta ttggtttatc ccaatatttg cgggcgaact ccaatcttct       900
     ttttttatgg atcgatgtta aaagaggttt ctttctagct wrcctcgtaa attrgcatca       960
     tgcagacgyc gcctgakggt actttcagaa accgaagttc ctgctwcctg taactgatct      1020
     ttgatctgtc gtaccacaat cttgggattg attttacaca gccgcaatat ttgtcgatca      1080
     tcaacagaag tagtagccct aggacgccct gaccgtggct tatctataag actagaacay      1140
     tccaarctct tctttattrt ttttcgcacg ccttctggac taactttaaa taatttyccm      1200
     mmrsmmytta agtttttcat ttttttgtat tcacwtacaa tcattgttct ttcctctaca      1260
     gttaatttty gcytcggagc cattatgatt tcaaaaatac tcaaatcgcc tcaaaatatt      1320
     ttgttattaa atttaaacta cctacactgc cctaacaata ctaataaata actttaaaac      1380
     cgcgagaata tcagaaatcg tttaaatttt gctacttcaa ctgacttttg acgcactcaa      1440
     ttcaagcagt gagcacataa ccatatatta ttgaagaaaa caaaatgaat tttggggaat      1500
     tcccttctgt atgtattaga atagtgttac caaacataaa taataaacag atcattcaat      1560
     gaaactgcga attttggaaa ttgtgtgaca thatttataa ggtcaattaa tttcaactaa      1620
     cttttggagg gcagtg                                                      1636
//
ID   nMar-15_Hmel repbase;    DNA;    INV; 708 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-15_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-708
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 708 BP; 233 A; 114 C; 148 G; 213 T; 0 other;
     cgaggggcat tcaaaaagta agtttcgctg gtctggcatt tttaatgagc accatgtagc        60
     gggctcacac tgaacatagt ttcagttctg ggtctgctgg taagatcggc accgatattg       120
     atgaccgaaa atagtttttt tagcagtcta tccttgacaa caatggaggt atcattggaa       180
     aacgtgtcca atattgaatt gcgtgcagtt attagatttt ttactgctaa aggactaaat       240
     ggaaacgata ttcacagtaa attagtgcaa gttttgggaa agattgtatg agtgtgcaaa       300
     tgtgcgacga tggcgtacga tgaacagcga gcaggacggc caaaaacagc cactacggac       360
     gaagctatcg atgctgttga aaaaatcatt caagatgaca gacgactgac tattgatgat       420
     attcttgaat tgattccttc tgatattgag atttgccgaa cttcaatctt tacaatcttg       480
     aaagataaac tgggttaccg caaagtgtgt gcaaaacagg acacgtcttt tttaaggaag       540
     gtttgcttaa acttcaatac agacataaaa aatgtatcca agtcgaaggc gactatgtag       600
     aaaaatagtt tatgtttcaa ataataaata aatatgcatt ttttaaccta aaaattgttt       660
     tttacatcat tttaaaaata gggaaactta ctttttgaat gcccctcg                    708
//
ID   nMar-16_Hmel repbase;    DNA;    INV; 1511 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-16_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1511
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1511 BP; 458 A; 285 C; 273 G; 495 T; 0 other;
     gtaggggcgg cgaagagggg actttgtgga gtcattcgag cgcatcagat taagatactg        60
     gggattcctt gtactcggtt acgtacttcc accaaatatg agcttcctat gtatggccgc       120
     gcgtctagga taaaggatca gattagtaaa aaaaaattga tcatcggaca ttctcgagcg       180
     cgtcagatta agatagggta agttagttac atgctaaatc gtgtatattc cactaatctg       240
     acaatttgag agtgacgcaa aggagggaga gggctccaaa gttgtaaaaa aaaaacgtta       300
     tctggacatt ctcgagcgcg gctaattttt tttttatttt gaagggaatc attcaaggat       360
     tacgaaaaac atataatctg acaaattcca caaaccgaag taatagaaat tgattgataa       420
     agtttaatat acctaagaat tgcatatatt cctctcaccg tatttctatt cctatcgcac       480
     tcttttttta tttattggtc cctaactcat caatgaagat gataaattaa aaaaaatact       540
     tgaaaaaaaa attttttttg tacttttttt tataaataca agtattctat ttcaaacata       600
     cattctttta gttacattct atttcttgag cttttctatt gattgcgttc aatgaataaa       660
     aaaattgagg ccagtcgtgg cgcagtggca caaagtgtga cagtaaaaca gactggttgt       720
     gggttcaatc tccattccag gagatgaaat atttattgaa atttatattt ccatttcttc       780
     gctctggtgt cgaggcaaaa cagtgacgtt aagtgctgct actcaacact caatgccttc       840
     aaaatttggc agaaagtggg gaacagagtg tcttaacctt aggttccctc tgcctaccct       900
     gctgtgtgcg ggatacaacg taaagctgac ttgtttcttg tattggttta aaaaaatatt       960
     aataattgtc agattaagca agtcccttca gataatcgtc tgattttgag atatcacgtc      1020
     tagggcatga agatgaacca tatatatctt aatctgacgc gctcgagtat ttcaagatga      1080
     cgattttttt ttgcattttc aaacaacgat tacgagcttg cgtcacatcc aaatcgtcag      1140
     attattacat aagagctttt ttttaggttc acttaacacc cccttagaaa atctgacgcg      1200
     ctcgataata tttttttttt tgccattttt aactcttacg tacgaccacc tccaccacgg      1260
     aaactgtcag attaacatat tttcatgctt aagaagacgt aggcaattga tgatatcaat      1320
     atctgacgcg ctcgagtatg tccatggaac agtttttttt tacatttttg aaaatctata      1380
     acccctcaac ccaccggtga aacgaaattt tttatatgac atttttttct tgttatcatc      1440
     taagcttcgc aacccaatag gtctccatga cgctcgagtg actccacagt ttgctgcttc      1500
     gcctccctaa c                                                           1511
//
ID   nMar-17_Hmel repbase;    DNA;    INV; 692 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-17_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-692
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 692 BP; 244 A; 98 C; 94 G; 237 T; 19 other;
     gggatgagtt cgatatatca aaacgtaact taaaaccgat atgttaagga aaacataacg        60
     tatcgatata tgtttttaga aaaccgtttt tacagaaact taaaactcaa catagctgtg       120
     atctgaacaa aaccgtaata acgcaaaact tytgaaacgt caaacggttt tatatyraaa       180
     ctaacttcct ctctttctaa gtaatgtatt ccgaacgggc gtaaatgaga taaggcgaat       240
     atctgataaa ctgatattcg ctacctctct ttctatccgt atattcttca cgggtgtaaa       300
     agaaatgaag cgaatayccg atagctaact aactarcaga ttcatgttty ggcggttttc       360
     ttasttagtt actatttckt cgttatgaaa tcgaacttct aaataaatga ataaggttga       420
     aatttggatt taaaatatga ttttgtattt taacattatt tcaatttaat tactaaatat       480
     tgtttttttw acwtatgwtt atagtttatw aagcatttwt tatgtaatac taattamata       540
     tatttattat tatattataa tdttatantt atgattgcgh ttattgacaa dtcgaaaaaa       600
     aaacgatatc tgaaaaccgt ttttgatatc gatacgaaaa ccatatatcg gtttcataac       660
     cgttarcgga aaaaaacgat aacgcccatc tc                                     692
//
ID   nMar-18_Hmel repbase;    DNA;    INV; 1565 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-18_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1565
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1565 BP; 492 A; 268 C; 339 G; 466 T; 0 other;
     cacacaccgg cataattaga ggaacacaaa caaaaaagga ttttttttta caatttatgg        60
     gtaatagtac aagtggttca tttattcaga ttattactgt cgtataatat aacattttgt       120
     gacatattga catttttcaa taatgcaaca gaaattatac ccttttaagt gtttgttgac       180
     agtcagcgct tttaagtgtt ttcgataaga agtttgttta tgcagtcaat gatggcccta       240
     gctgattttg ttgttgttgt ttggagattt aactttgtat tgcatacaaa atgagtgatt       300
     tacctgcaac cgaagtcgcc agagctgtga cattgataga ggaaggtcac acataccgtt       360
     cagtgagtca aatgttgggt gtatcagtat ctgtgatcca ccgtaatgtg aaacgataca       420
     gacagacagg atcttatgtg cggaggcggg gacaaggcag aaatcgtgca accatgccgt       480
     agacgaacgt tttataaggg tgcaaacttc gtcaaacgtc gtcaaaatcg tcgtcaaaca       540
     gctgttcagg cccgaaatct catggaagaa gtgcgtagca tgcgtgtcag tgaacgaacg       600
     ataagaagaa ggcttaatga agttggttta aagacatacg taccagccaa agcgcctaaa       660
     cttgaggtaa gtcatcgagt tgcaagatta ttgttcgctc gtcagcacca acattggtca       720
     gatgaatgga gtcgtgtttt attctctgac gaaagccggt tttgtgtgaa tttcatcgat       780
     ggacgggaaa ggatgtgaag gtatcgagga gaacgatata atcaagcaaa ttttaccgaa       840
     acagtgtcat acggtggaga gtctgtcatg gtatggggtg gcataagttt aacagctcgc       900
     accgctttgg tcatgattga tggcggttcc cttactgcac acagatacta aaccgatatc       960
     ttggaacctc agtaatgcct tttgccccat ttataggcct agattttata tttatgcacg      1020
     ataaggcacg gccccacact gctcgcgtag tttgtgatta cattaatgaa gtcggaatta      1080
     cccaaatgga ctggccagca cgatctccag acatgaatcc gatagagcat gtctgggaca      1140
     tgactggacg aagactacag aagaaaattc catcccccag gaatattgac gagttaaaat      1200
     tggcgctgat tgaagagtgg ggcaaattgc cccaggaaat tattaaaaat gtcattatga      1260
     gcatgggcaa acgtattcga gctctattaa gtgcccgcag aagcaaaaca agatattaat      1320
     aatgattgtt aataatcttt gcaaagaaaa tttgatttta aaaaattatc gtaaaattca      1380
     aaatttctca aatttgattt tttgtctgta tttttataaa taaataatgt tcaaccctag      1440
     tttctgttgt ctcatattca ttttgagtaa caaaacttaa atgaactgaa aaacatacac      1500
     gaaaatgtag taattaaaaa aatatatgct ttttttgtgt gttcctctaa ttttgccggt      1560
     gtgtg                                                                  1565
//
ID   nMar-19_Hmel repbase;    DNA;    INV; 886 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-19_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-886
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 886 BP; 309 A; 134 C; 120 G; 318 T; 5 other;
     gggatgagtt cgatataaca aaacgtaact tgtaaccgat acgatgccga aaccatacca        60
     tatcgatatc tgtttctaaa aaaccgttat catagaaact tntcaanact atcagatgcg       120
     tattaaaact taaaatcaca cacagcaact atcgcaacga aaacgtaaaa acgaaaactt       180
     cgcataacac gaactaagta actacctctc tttctaacta tatgtttctc acgagtgtaa       240
     aagaaatgaa gcgaatatcc gataacttgc atctataaga tattattact ttacgttaca       300
     aaaaagaact tctatntaat gggaataagg ttgaaatttg gttaaaatat tcatattatt       360
     ttcacacttg agtggattcg acttttaaat tctaaacgtt tgtttttaag tgacaaatgc       420
     ttatttgaaa tttattttca aatttttaat attttagaaa tagtttagta ttgtatttag       480
     tcctttgcga tncgtattgc ggacgaggtt tccttaaaaa ttgtgcattt cagtgtgtgt       540
     atatactttt ttttaacaac aatttctata tagtttaaag ttaattagtg ttagtgtata       600
     gcttaaatat attagtgtat atagacataa tttttttctt aaaaatgtcg cgtaaagtct       660
     ctcatctctc tgtatacttg gtgatttant ttatattcat aatactttta aaaaacgcaa       720
     ccagcgttta atgtcaattt gccttcattt tatatcgtta aaaatgattt aacgtttgta       780
     aactgtatta tcaatatcga tatctgaaaa ccgtttttga tatcgttatg aaaaccatat       840
     atcggttaca taaccgttat cgaaaaaaaa cgataacgcc catgcc                      886
//
ID   nMar-1_Hmel repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-485
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 485 BP; 143 A; 80 C; 86 G; 165 T; 11 other;
     caggntggaa gcgtcagcgc tccttttacg ggaacagcat atagggtaaa atatttcaaa        60
     cccataccta aagaaattaa tcaagatacc tcaacagttt agacgtagga tttttttttc       120
     atttcacgat gtttatccat acctgtattt cgtgtgacgc agttacgcat agataccaat       180
     aacgtaaaca cttactacta caaaaatact actaaaggtt aaacaacttt gaactttatc       240
     gccaatacct acgactcgat ttcggaatga ggcgtgtgcg gcggtgtccc tttgataggt       300
     ttatgtgtgc gtgcgtcgtc cttaacaaat ggcgttttat tttacaacga taattttatt       360
     atttattttg tttgaaaaaa ahnnttttca tttttgggdw dndnnatttt ttaaattgta       420
     ttaggctttt atagagtagt taaaactgtg gtttcattta aagtggtgct gacaaaaaca       480
     ctctg                                                                   485
//
ID   nMar-20_Hmel repbase;    DNA;    INV; 2146 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-20_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2146
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2146 BP; 711 A; 335 C; 327 G; 754 T; 19 other;
     gacatgggcg ttacgtagcg tcactagttt cagaaactgc ttacaagcca aatcacggca        60
     taactagttt cgggctgtcg tcgaaactag tgattgtgat gattcggagc tacgcggtga       120
     ttgtgagcta cgcggttatt cgaaactaca tacatgttgc gttgtggtta tgtgtctgta       180
     cacatagcca ttatttcaca tacgtagttt catgagagta agcagtaagc actaatcaag       240
     ttacatcgac actagcacag ttgtatctcg ctctattata gtacgtaccg caacaaaaat       300
     agagacgaga ataggcgaat ttgattgata agctacaaac atcgtacttt tttgtattat       360
     acacccaatg aaacgaaaaa gcgattctaa actgtaaatg cagaagttaa actatattat       420
     ttatagtttt atgaaaattc caagaaaaaa ccatattatt ttattagcta cattgacact       480
     tatgtagttg catcttgctc tattttagta cgttccgcaa gaaaaaaaga gacgacagta       540
     gtttaatatg tatgcattaa tgcaatttga tcgattatta ttttwatayv vataattaaa       600
     aaataaattc tgcctcgaca ccagwgcgaa gaaatgaaaa hataaatgta aataaatatt       660
     taatttcctc gattgggrct cgaacccgca accgtcgcgt tacagccacg cccttgtgcc       720
     gctgcgccac gacggtggat tttaaccaat tccgagtttt ttttgtttag cgtgacgtag       780
     ctttcctaat gtttattatt tattaaaaga ggttcggtta caatggcttg cgacgttcac       840
     ttcacacttg tatatcttaa gcacattggg attttttatg cgatctacta asacttttaa       900
     gaattccgag aaacgaggtt cgctacaaaa aattgaggcc taaacccatc acttaataga       960
     actttgaatg ttgataataa attagcgcaa aaatctgaat ttgatgtttt taatgattcc      1020
     ttacgtttgt ataaagctca acagaaaaaa tattttatat acgtaataaa gaatccataa      1080
     ctgagcttac aattttwata wyttttttta agatcttaat tttggktttg tattttgttw      1140
     ttttttttgt tttatgttta gctatatagc artartgcag gctgctaaaa ttaattactt      1200
     tttaaatgtt tttaatttta agtcttttaa atttttattg tatactttat tttaattatg      1260
     caaacaaaaa ttctgaaatg gtcagcgaat aaaggcttta tttatttatt attwwtttat      1320
     attcagtagt aaaattttaa vatttaattt taatttaaat actagataaa taaatcarct      1380
     tcacgctgtt tcccacacac agcagggtag gcagagggaa cctagtgtaa cactctgtta      1440
     cactaggttc cccactttct gccgaattct ggaggcattg cgtgttgagt ggcagaactc      1500
     aactccgcgc tttacctcga caccagagcg aagaaatgaa aatattaatt taaataaata      1560
     tttcatctcc tcgagtgggg attgaaccca taaccatctg gtttttacct caagtttggt      1620
     ctcaagtttc atccaatttt aaaccataat attttgctat tacgtgtcag tttcgcgttt      1680
     atgttttatt ttttgtattt ttaaatttct ttttccattc tgtaagtgta aaattactct      1740
     ttttgaatgt attttgtgtg taaatttttt gttttcactt aatttggaat tttaatttca      1800
     ctccgtaatg aaatatatca aatattatta aaaaacgatc agcgaaaaaa ctatataaaa      1860
     ttctatatat taaaaatata taatataata aagtgtatat aaaaaaaaat ataaaaataa      1920
     ttgtatataa aataaattaa taaataatta cattttagta gcaagatatt gtaatttaac      1980
     ctaaaacgtt ttcaatcata actataaaag taatcgtatt aaacttccaa ctgcttatga      2040
     aacatttgta actagttaca gaaataacta gtttctgaaa ctagctacgc gtaaccccga      2100
     aactagtgat caccggttat gcttaaaaga cgttacggcc catgtc                     2146
//
ID   nMar-21_Hmel repbase;    DNA;    INV; 939 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-21_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-939
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 939 BP; 288 A; 166 C; 207 G; 278 T; 0 other;
     cgaggtgtgt tcaaaaagta aggtgacttt tcaaatttgg cgggcaacgt actttcgatt        60
     atcgattttt ttattttgtt atgttggtac actcttcccg aacatctgta ccaagtttca       120
     agtgtatagc attttttgtt tggttgggag aggcgtaaag gttataagtg ttttgcgtgc       180
     tcggcgattt cttgctatcg aaaaatatgg atcaaaggat ttgcatcaaa ttttgtgtaa       240
     aaaataaaat aaagtgctcc gaaacactta aaatgttgac agtggcatac ggtgaaactg       300
     ttctgagtaa aaaaaatgtt tacaagtggt acaaactctt ccaagatggc cgggaagatg       360
     ccaatgacga gcctcgctct ggacgcccaa gcacgtcaac aactgatgaa aacgttcaag       420
     cagtgaagaa aattgttctg gaaaatcgtc gaatcactat cagagaagtt gctgaggatg       480
     ttggtatatc gcttggctcg tgccatgaaa ttttttctaa cgttttgggc atgagacgtg       540
     tgtcagcgaa gtttgttccg aaattgctaa aatgcccctg ctcactcatc tttgctggtg       600
     agagattttt tggccaaaaa caacaccaca atcatgcctc agccaccata ttcaccggat       660
     ttggccccat gtgacttttt cttgttccca aaactaaaga gacctatgaa aggacggaga       720
     tttgcaacga ttgaagagat aaagactgca tcgctggaag agctcaaggc tataccgaaa       780
     agtgcttatg agaagtgctt tgacgattgg aaaaaccgtt ggcataagtg tattgtatct       840
     gagggggatt actttgaagg ggacaacata aatattgata aataaataaa tattttttct       900
     taaaaataca aagtcacctt actttttgaa cacacctcg                              939
//
ID   nMar-2_Hmel repbase;    DNA;    INV; 3608 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3608
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 3608 BP; 1100 A; 661 C; 619 G; 1214 T; 14 other;
     gtgttgccca aatgcaagaa caagacgaga cttagccagt cttggtcttg gtcttgcgcc        60
     aatacacctg gtcttggtct tggtcttgsk ctyscgctch cagtcttggt cttggtcttg       120
     gtcttgcagc aagagtcttg caagtcttgc aattacctat tagtctatta ctatttatta       180
     aagtttactt taaatcttaa aaaacgtatt agaattggaa cattgtgagc ttgaattaac       240
     atagccatag taaagatcaa gcagattaat aaataactga agatttgata agaaattcga       300
     aaaatcaact gacctatatg tcgttttcca tggaagtaac tgtttcttaa taaacattta       360
     tgatttataa gcttacattt gctaaaacat gtaaaaaaac aaattaatta caataacttg       420
     actgtatttt aaagaacaat acttatctgt ctagaaagag attgaaccct caacttataa       480
     gaaatttaat aaaagatttg tacgatttat catttatttg aacaaaaaat aaaatacaac       540
     actaatcaac agctttatca ttaggttatg atactttata tcaatttttt tgaccaacta       600
     ttaatacaaa gtaaccatct ggctgactca tcatttaacc tatttctatg ttttctaatt       660
     actaatgatg ctttagaaaa taacctctca gcaggtactg aagttgcagg tattgagaga       720
     aaatcacggg ccattttcga taaaatcgga tactctgtct catgcgtcct ccaccaatct       780
     aaaatgtctt ccgagctggc agttcttggt tttctcaggt actcctccaa ctcgtctatc       840
     actaagcctt gaagacaaga tccagatgac gtcgagggac attcatagag tttatcaaag       900
     tctattacgt cttcatcttc atcacatact ttattttctt tttctggtaa ttccagagat       960
     ttgttcagtg agtgtagact tttatattct tcataaagtt cattgaactt gcgcagactt      1020
     tctgttttaa gttgcttccc ccacattgtc aggtcaaaag tctgagcctt atgccttggg      1080
     tctaaaatta aagaagtaca ataaatccag ttgctcttct tgtaatgttt aagcattttg      1140
     tctcgagctg cttggaaagc tagaatgagc ctttcatcca cttcagatcg attaggtttc      1200
     tcatctaact gttttaccat agattcaatt ttatctagca agagattgaa tgatacaatg      1260
     actagcggta atgtaacata tttgtctcca ccaagttttg tacttaaarg tttaaagttt      1320
     attagaaatt tatgtaattt ttcgagtacc tgccattcat tagctgtgat ttgaaaatca      1380
     tttaattcgg tgacagaact gcacaatatg tcaatgcccg ctctcacttt taaaccaaat      1440
     ccaatcatat catgtgtgga attccatctc gttggacagt caagaatggc atttagattt      1500
     gatggcacgc cagctgcttc acaagcagac tgaaacttct tcttcactat ctcacttctt      1560
     tttattttac tggaaatact gcgtaacttt gttacagatg tacgcgagtc agcaatattt      1620
     ggttagtgtc agactcatag tgtaatgcta aggtctttaa taaatcttgt acaccaaggt      1680
     ttaaaatgtg agcaaagcac cggaaatgtt gattgtctga atcaaagtgt ggcggcagct      1740
     gtttgcccag ttcatacata aatttggtat ttgcagttgc gttgtcgacc gtgatacctt      1800
     gtattttatc aattatgcca tattccaata aacattcatg gaaaatcgtt gcaatatctt      1860
     ccccagtatg tcgaccgcgt gatggtataa aatcaagaac tacagattga tacwtccatt      1920
     cgttgtctat ataatgaata gtaaccccgt agtaactcct accagcaatt gacgtccacc      1980
     catcaatggt aaaagacatt ttagatgata attgttgaag tcgttccttg agattcaatt      2040
     ggagctcttc aaatcgctct ttgactttcc ttctaagtgt agacctttta ggaaacacca      2100
     tattagggca aatacgtcga aaatatactt gtgtagcttc gtcatcgaaa aatgagaagg      2160
     gaagatattt tttcaccacc caatcaactg tagctgtcgt gatgttgtca ctgctgtttt      2220
     ccgactgaac caaaacaata aatcttgtgt tattatttaa aacatactag gtttgagcgt      2280
     ataagaggag gaggtttgtt gttgttaaat cgagaaaatc gttaaattga tatttgttat      2340
     attaaggttg cactgtactg taatttacca aaataaagta cttagttgtt actggccgat      2400
     taaatgaaaa tatgggtgtt tataaaaaat atttaagacg ataattacat acttaatatg      2460
     tcgcacccct agatgaaaac accactaact caaaaatact tacgtaagtt aatggcgttt      2520
     ttgaaagtat cgcatgaata gctacgcaga gttataattc ttttaactgt taaaaaaata      2580
     ttcttacctg tccacttctt ccagcggtka ctaaaaagct tgtgatatct ccacttaatt      2640
     ttggtttaac aggaagaaat atttctgatt cctttttgtg gaaagatatt agatgtttcc      2700
     ttaagcctga agtgtttctg tttttcattt ttatttcaat ctttttatgt tggcacaatt      2760
     tacagaaggc agtttgggat gcatgaatta tttcgaaaaa ctcctcaaat ttgcttttgg      2820
     gtcttttaga tctgtgactc aaactctcgt tactcggact agaataattt gaatcttcgt      2880
     cactcatatt aaattgtaca cgtgrtacgt ttttagaaaa caacgagaat tagtaaaaac      2940
     aattattaag ttagactcga agcacagctc aattggaaat gactggaatt aaaataattc      3000
     ctttatttat tagtacgttt ccttgctttc taccgcgcct gtaggtactc ttaaaattcg      3060
     aaattatttt gcatgagtat acctacgcct acgccctatg gcggcaatca aatagtgtca      3120
     aatgttatga tttcggcgtg gcggcaacga ttgttttaga tttyaaaaga agccgccggc      3180
     gcgtgtatca taaccatgta cttccgaaaa gcggcaaatt tctttgagaa gtamktmcaa      3240
     aacctttgat gccgcgttat caaagtgccg atggttaaaa cayaactatg catgcactca      3300
     gtttgatttt aatagatagg tccagttttt catattcttt gctacagttt tttgcgtctc      3360
     atagaattcc taagcgtacc tacctataca ccgaactgtt acacctaact actcagtgaa      3420
     atagcgctaa gtcctagctg caagacgcaa gagccttgca ggctatgtct tgttcttgct      3480
     caaatcttgc acggtcagtc ttggtcttgg tcttgctaaa aatacgcggt cttgttcttg      3540
     gtcttggtct tgcaaaaacg caagaacaag accaagactg caagaccaag actgaatttg      3600
     ggcaacac                                                               3608
//
ID   nMar-3_Hmel repbase;    DNA;    INV; 953 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-953
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 953 BP; 315 A; 171 C; 149 G; 318 T; 0 other;
     ggggaattgt gcttaagatg acatactttt tgtttgaaga caaatatttc aaataaataa        60
     agtcatctga gaacagcata ttgcgtatac tattatatat ttcataatca acgaaattat       120
     tttagtttca gaacaatcat ctttcaaaca tcataaaaac aaacaaaaat cgcacttagg       180
     tcgaccagtg taagacgaca tatctacagg gtaaaatgac atacttagta tgtggcataa       240
     aaacgccatc attatttgtc gagcatagtt cacaaataaa tagtttcttc tttgctgggg       300
     ggcttttaaa cagtattaag gccagattca tacatgttgc aaattttatg aggttggatt       360
     ccgttatcag tcacttcctt ttccaaaagg gaaataagct tcgtcacctg cggctattga       420
     atgcccttgc tctagcagcc ttatccatgt cttcttgtga ccaatatata ttcgtttgta       480
     attgccaggc attttgtagg taaagcaaaa aaaatacatc gattctattt ataagggtaa       540
     gatagtatgc catcttatac tcacgttttg tatgtcatct tacccaatag atatatgaat       600
     ttaattttaa ccgttgtgac aaaagtttat aggttaggat gcgcttttag cgttagttgt       660
     gtcatataat aatcctattt tacatttata attagttcaa atagaaaatc tttatcttac       720
     atgtcttttc accatcaagc aaaagcgaaa gaaaaatttg ttgcaattga aaataacgaa       780
     aacatgaatt acttgcccat ctgcattcac tttcagccat actgaattta agcactagct       840
     gcatctacag acactctcta aaacgtcaca agatcgcact tagcgctaat agtttcatca       900
     atattggtag tgtgtcatct tatcatagta tgccatcttg agcacaattc ccc              953
//
ID   nMar-4_Hmel repbase;    DNA;    INV; 2780 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2780
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2780 BP; 973 A; 427 C; 399 G; 973 T; 8 other;
     ccctgggatc cggccgttga atcctgcata dacgagtttt cttaattaaa cctatattaa        60
     tgaataatac atgattagta gaacagatta cacctgggtt gcctggaaga atcctgccgc       120
     aatcaccttt aattacattt tttcgtaact cgtttttgga gaaaattgca cchatacgtt       180
     ttttatatga atcgcacatc atttgaaaga taatcgcata aggaattgga aaattaaggg       240
     ttgccagctc tcagtctgcc gcaagtctag ggttgcctgg tttaaacatg tcactaaatg       300
     ttaataattt gcactcatgt gtttttttaa tgaattatat atcaaattaa agcttatttt       360
     tttctgaaca ctataaaaca gggttgcctg gaaaattcct gccgcaaaca ggggttgcca       420
     gcgtttgaaa tattttattc cggttccgtt tgactatgag aatagacgat gaaatgcgcg       480
     gtctgcctta tgttttaaag taaaatatta tataatagaa ggtcaatctt aaaatcaatg       540
     tttattctaa ttgttcacct gttaaatgat gattttaatc atattaagta cacgcagaaa       600
     actatttaaa gatgaaatca ttcttatttt tcaagtaaaa taataatcca taatattgag       660
     tcttcgcaaa atttatttta taaataataa tatttagtta waataaccct tttaaaacaa       720
     ctaaattatc taattaagta aatgtttaca aatatcgatc tactataagg tattaattac       780
     aacatgtttc cttaatataa tgagaggtga caattattgc ggatattttt ttattaatta       840
     agaaaatatg gaaaattaca tttcaataaa caatctgtct ctctcttcgc cctctgcttg       900
     tttgatttga caacgccgtc cgtatccgta gaaagaacta tggcgcccat ctttttggta       960
     cgaatattta cgtttttgca aagtaaatga aaactattca actaataaaa actattaaaa      1020
     aatatagata aaaaaatgtc gctagcaaga acttgtccgt ctatgctgat agtttttaag      1080
     gcatttaggt ctgaaagaat tgttcttata attataataa agcgtaatca ctcactaacg      1140
     tccctaactt agtataatca aaactgaggc aattcccacg gccacaattg tcacatttta      1200
     ttaaactata taatattaaa tattaaagta tacttacgtt ttgcattaga aaataattaa      1260
     aaaatacttc tttatatttt tgttttaaaa caatgaactt tttgtaatac tgtaaatgat      1320
     aactgtgcat tgtgtcacta tttaaaaaaa tgtcactgta tttaaaattc attttttggc      1380
     gaaacaataa cataatttta cacttttgga gagattcctt gttaaattct atcacatttt      1440
     cactcctgcc gcacaaaaaa cacatcttca tttttgtcaa gtaaaaacgt ctttactcca      1500
     aaacgaaagg taagtaacta agtaatatgc tcaaaaacaa ctcatttggc catctgcact      1560
     tttattgcat ttagaaacaa tacatcttcg aaaataattt tattgcattt ggtttgcttt      1620
     gtatcgcgcc gcaaaatgtt tatctatagt aaaaaatagc caactaattg atatttgccg      1680
     actcttggtc ataaaccgta aatagcgttt attagtcggc attactgtcg gattttcttc      1740
     gaatttattt tgctaactta gttttgttta ttataattct attatatata tttctttcct      1800
     atgcaaatta ttaaaaattg cgtgagaaaa aaaaattgcg gcaagccttg tcaaatcaaa      1860
     caagtagagg acgaagagag agagttcatt gaaatgtatt tttcaatata attaatdaaa      1920
     aaaatatccg caataatggt cacccttcat tatattaagg gaacatgatg tatatgtatv      1980
     tatattaata gtttatagta gatcdatatt tgtaaacatt tatttaatta gataatttaa      2040
     ttgtttcaaa atggtaattt aaattaataa ataaatatta gtatttagaa aatagatttt      2100
     gcaaagactc aatattatag attcattatt ttactttaaa aataaggatg atttcttctg      2160
     ccccatgatc tttaaatagt tttctgcgtg tacttaatat gattaaaatc atcatttaac      2220
     aggtgaacaa ttagaataaa cattgatttt aagattgacc ttctattata taatatttta      2280
     ctttaaaaca taaggcagac cgcgcatttc atcgtctatt ctcatagtca aacggaaccg      2340
     gaataaaata tttcaaacgc tggcaacccc tgtttgcggc aggaattttc caggcaaccc      2400
     tgttttatag tgttcagaaa aaaataagct ttaatttgat atataattca ttaaaaaaac      2460
     acatgagtgc aaattattaa catttagtga catgtttaaa ccaggcaacc ctagacttgc      2520
     ggcagactga gagctggcaa cccttaattt tccaattcct tatgcgatta tctttcaaat      2580
     gatgtgcgat tcatataaaa aacgtatdgg tgcaattttc tccaaaaacg agttacgaaa      2640
     aaatgtaatt aaaggtgatt gcggcaggat tcttccaggc aacccaggtg taatctgttc      2700
     tactaatcat gtattattca ttaatatagg tttaattaag aaaactcgth tatgcaggat      2760
     tcaacggccg gatcccaggg                                                  2780
//
ID   nMar-5_Hmel repbase;    DNA;    INV; 334 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-334
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 334 BP; 118 A; 49 C; 58 G; 107 T; 2 other;
     cagtagaaac tcgattaacc ggactaattg ttgtcgttag tcattcggat aatcgaaaat        60
     ccggataatc gaatntataa agaaaagctg gttttgtgca tatgtagcac aaaattgtta       120
     tatgtctatt aaaagcaaca agtacatatc aacgaaaatc aacgtttatt aagaaattat       180
     taacattttc caacatacga tttatanaca attacgtaca tataaatttt cttaggtttc       240
     attgtagtag gttgtataaa ataattatcg cggttgatag tccggataat cgcgaatccg       300
     tataactgag ggccggataa tcgagtttct actg                                   334
//
ID   nMar-6_Hmel repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-165
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 165 BP; 38 A; 39 C; 40 G; 48 T; 0 other;
     cagtacggtc cacgagtcgt ggccgccctg aagttagctg tagatggctg cgcagatttg        60
     attttaggat ttttcttact tttgattatt ttcttcccga gtgaacaatg cgcaaaagtt       120
     cagaaaacct aacttcaggg cggccacgac tcgtcgaccg tactg                       165
//
ID   nMar-7_Hmel repbase;    DNA;    INV; 1628 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1628
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1628 BP; 572 A; 262 C; 233 G; 559 T; 2 other;
     gggtaaaacc cggatagttg ccacactttt tgaaaaagct cttttgttag aaatgtatac        60
     cactacatta cctattcaat gtgtgttctt aaacatagta tattaatctt ctaacttagc       120
     caattttttc aaatataaat attattaatt ttgagtacag cctgttttac gtggcctcta       180
     aaaaagggga tagttgccta ctatggcgga tactagccta acgttaaaaa tggttcgggg       240
     gatacttgcc tgtctatttt tttttcaaat aaaaacgaac ttatattaat ttaagtaatc       300
     actttttgtt attgaacaca atctttcatt aagtattaat caaagtcaat ataattataa       360
     aattacaaca aaatagactc caaaatggta attaagtatc caaaataata attaaatatt       420
     actatttatt ttaaaggtag aacaacaata aaaataagaa ttaactttgg catagcatct       480
     attaaataag tattcagttc taattactta ctgagatcct ttataattat tacctaaaca       540
     acacttaaaa gtactaaggt tttaaaattt taaatttgaa catgtaattt tttaatttaa       600
     aaaaataatt aaatattagt atttatctta aatattaaaa ataattatgg gaataacttt       660
     ggcattagta ttgattatta ccagaagcca aggttttcaa tttgccacat ctcatgcaat       720
     ggtttttgaa tgttgtacaa gtttcatgca accacattcg acacatctca cattgtatcc       780
     aatctgattt tgatttagtt aaattataat tttcaaaaca ttctacacaa taattatcaa       840
     ctttaacttc tttgttggta tttcattttt ttgaatttgc taattgatat tgctattttg       900
     aatttcttaa ggttcgagag gatatgccat aaatccggga tatttcgttg atactttttt       960
     gttttttatt tagatcttcg aacgcaagtg ctaagctatc ttctgtccag ctgatgtggc      1020
     gcggcaccac gcctggcttt cgtttatact tgcgaggcat tttgctgttg agaatttatt      1080
     ttatttaaga taaactatag taaagcccaa taaaaatatc accaagaaaa aaaggtaaaa      1140
     ccaaatgaaa aaaataacta agaaaaaaat ctgtttgctc gttaaaatgt gtagttacgg      1200
     atagttgccc cagggcaaca atccgcaaaa gacagtaagg caactatcct ttttgatacg      1260
     gatacttgcc ctttttattt acaaaataaa taaaacatat ttaacaacaa aacgtttatt      1320
     acagtgcaat ttaaactcta atgcaatcaa agaaataatt attttactga aaccgcaatt      1380
     agttataatt atatttaacg gagattactt gccaatataa ttctgacgct cgtcaaagta      1440
     tcgtcgcgga agatttttac tcacacggac aaaactcgtg cacctacttc gacagctgat      1500
     gcggcaccga gtcctacgcg ggggacgctt cttattatga tcaaaaagaa acactgwmaa      1560
     cacgtctaac atagagcatt tgaaactgag gcaagtatcc gtccgaggca actatccggg      1620
     ttttaccc                                                               1628
//
ID   nMar-8_Hmel repbase;    DNA;    INV; 1420 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1420
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1420 BP; 509 A; 186 C; 218 G; 500 T; 7 other;
     gggtaaaacc gggatagatg ccgcagtggg atagatgccc cattttcaaa atacctaact        60
     tcccgaactc gcgacaaaaa aataattgta caagcaggag ccacagtctt cccgcaccaa       120
     agttattcac ggacattcgt gcaatgagga cgcgtttagc acatttkagt aaatatctcc       180
     gcggcgaaat tcgtgaacgc gtcaaagatt taaaggttaa tattttgcgt tgtataactt       240
     tataatttgt aatcaattac gctatatttt ttattacgtc gatgtactgg ttcattaaga       300
     ctgtatctag gtgcttatag attctatttt gtttataatt tactaaaaaa attccttggc       360
     atctatccct atcacaaagg atagttgccc tgatttttcg aggtataggt gcccttaggg       420
     gcatctatcc ctttatactc agtatatgga gttaggtata tatttttaaa atatttttta       480
     aagtatttat taaattagca ttttttaaac acaagaaaga tatagctaag agaaagcaaa       540
     aacaattgaa aactaagtta gactgtttca ttagaatgtt tagaatgttt cgaaaactat       600
     aaawatacga astcgcaatc cgactggatt caatgtgtaa tgtgtcagaa ctggctacat       660
     gaaacctgta cayttttcag aaattattgc gcaagatgtg gaaaaataaa aaccctatct       720
     ggctaaattt taattaaatt ggaataacga ataattatta tttgagataa ttagagaatt       780
     agaatagatg attagaatag ataactaaaa attatatttt gttcttttta atataaaaat       840
     gtataattgt gcaatgtgga tgttagtatt tatgatatta taatatttta atttataata       900
     ttagtgtttt acaagaaaaa atattaagaa ttgtaatttt gttgtaaaat ttaacttaaa       960
     aaatatgata atggatgttg aaagaattaa tattttagtt acacaaatgt tttaaaattt      1020
     taataagatt ttaaaaaaca ctatataact tttcattatt atgattatgt ttgttggaaa      1080
     caaaattgct gttttaaaat tagaattatt taacaattgg tttggttttt tcatttaatc      1140
     ggtataaagt gcacctacct tactctgcag gcatctatcc tccccagcat tttcatagtg      1200
     gggcaactat ccatataggt rggcatctat cctcaaaatt agtgtttcac gaaaagctat      1260
     tttttgcaaa atctatattt gatttgttaa aaaaaaatat aagtaattca tcacaaagga      1320
     ttgagctagc taaataaata aaaatkattc ctataaaaaa tatattttat ctaattaggt      1380
     ggayatttca aaaagtaggg catctatccc ggttttaccc                            1420
//
ID   nMar-9_Hmel repbase;    DNA;    INV; 1863 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous mariner element from Heliconius melpomene.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   nMar-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1863
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1863 BP; 620 A; 267 C; 310 G; 661 T; 5 other;
     ggggagagcg gggctaaaag ttaccgaggt aagttgttcc gatggaaata atttcgcgga        60
     gaaaagtgat aggaatattt agtaaacata tagtgaaatg caatgtgata gcgcacccat       120
     ggccagcata ttgaacaatc cagtggcanc cgaaaccaat ggaatagcac acgggtgtcg       180
     ttggtgcacg attgtaaata tttttgcatt tcatattttt ggtctatctc acaaatttta       240
     acgattagcc tcgagtatgt tagtgttttt tttacattat attacctact atttcggaac       300
     actatttgta aattatttat gttttctata tcttatttat atttaatttt ttttcaacac       360
     gtgtttttgg ggctagatgt tccctttttt tggggcatgt tgtgacctgt tgttgtgacg       420
     aaaaactttc gccaattcat ttgtaccaat aatgggatgt aaatattgta atttttcata       480
     ctaaaaaata ttgtaattta gtaacatgcg gacttatgct cggaaatcaa ctcgaggtta       540
     tgtgtcatat gagttgatgc aaaaagcagc ggatgtagtt ttcaaagatt gcaggaataa       600
     gataaaaact gttaccaaag aattacatat acatattaag tgcgaaaacc taaaggtata       660
     aantttttgt ttattatttt ggtttaacaa aatcaaaata agttttattt tatgtaaaat       720
     tatcttttac tttttagttc cgttgttttt cggttcggtt ttttttgttc aaaattaatt       780
     ctttttacga ttttaagtga taagtaacct taaaaggata cttcttaaac gagtgttggt       840
     tgtggtggta gtggttggta acgagtggca tctgttgtga tatgtaaaac ttgactcaat       900
     taggtattat ttttgtggaa actaacattt tggtatatta acaagaaaat acataaaaaa       960
     tattcgggcn aattgggaac ctctcccttt ttttgaagtc ggttgaaaat gaaaacttct      1020
     tttttgaggt tggttgaaaa gaaatgcaac gatggggaat cttacttctg acaataattt      1080
     taacaaagtt ttcccttgta actattccag tataattaat atttaccaaa ataaaaacaa      1140
     attttctcaa ttttgaccgg attttataat cagaacctaa ccaaactttc atcaaactat      1200
     ccttgaagtg tatcctttca aataagaaaa gaatcattag aatcggttgg cgtgatattg      1260
     agttattcgt cattttgtcg cacacgtacc aatacaaatt taatacttat gtgattttct      1320
     catagatacc attgtcaaaa atagaccaaa aaaaaattng ttcccacatg ggaagcacta      1380
     cctttcaaat aaaaaaaaat catcaaaatc ggttcaccta atcaaaagtt atgaagtaac      1440
     atacataaaa aaaagaaaca gtcgaattga taatctcctt ttcttacaga agtcggttaa      1500
     aaaagatttg cttttgcgcc tggtaattat tatgatactg ttgattattc cttaaataaa      1560
     caggctttgt tcgattattt attgtttttt attttgcaaa taatagcttt aaaaatatgg      1620
     taacaattta ccccggtctg ttaacaactt gccccaagtc ggggtaagtt gttactttcc      1680
     gacttcagtc ataaaaaaat tcataataaa aaagtcttac aaagaatacc ccaaattact      1740
     gttttaattg caagtctaga tatgtaagtt gaatttgatt atattgtata aatactnaaa      1800
     tcaagtattc gtagcaatat ttgaggttaa aaaaaaatcg gaacttttgg ccccgctctc      1860
     ccc                                                                    1863
//
ID   Nobel_I     repbase;    DNA;    INV; 6294 BP.
XX
AC   .
XX
DT   09-MAY-2009 (Rel. 14.06, Created)
DT   10-MAY-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Nobel_I: A Bel-like LTR retrotransposon in Drosophila persimilis.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; gag-pol; Nobel_I.
XX
NM   Nobel_I.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6294
RA   Austin S. and Styles P.;
RT   "Nobel_I: A Bel-like LTR retrotransposon in Drosophila
RT   persimilis.";
RL   Repbase Reports 9(6), 1151-1151 (2009).
XX
DR   [2] (Consensus)
XX
CC   Nobel_I is an element belonging to the Bel superfamily, found in
CC   Drosophila yakuba, D. ananassae, D. pseudoobscura and D.
CC   persimilis, with a copy number of 11, 54, 2 and 53 elements,
CC   respectively. The consensus sequence is 6294bp in length. Nobel_I
CC   encodes a single gag-pol polyprotein which starts at position
CC   1107 and ends within the LTR, which is interrupted by a premature
CC   stop codon between positions 3534 and 3536 in the consensus
CC   sequence. The open reading frame is only intact in one copy of
CC   Nobel in D. persimilis. Flanking LTRs can be up to 100% identical
CC   suggesting that Nobel is still actively retrotransposing in D.
CC   persimilis. There is some substructure to this family, with a
CC   group of 5 elements in D. persimilis sharing 37 mutations from
CC   the consensus, and a group of 5 elements in D. ananassae sharing
CC   5 mutations from the consensus. Despite a patchy distribution
CC   across the Drosophila phylogeny, there is no evidence for
CC   horizontal transfer of Nobel between the four species in which it
CC   is found.
XX
SQ   Sequence 6294 BP; 1721 A; 1466 C; 1491 G; 1616 T; 0 other;
     tggcgccccc gggtggactc gcaatttaaa cgtatatatt aattcaagtg gaaaggcaaa        60
     aagtgacagt gacacagtga agatacatac ataaatagcc aaaatctatt gtacatacat       120
     acatacatgt acatgcatat gtgctgcagc taaattgcca aagtgaccgc gacgtgtgtg       180
     caaataatta aacaaaccaa actaaaaaaa atcaccgcgt cggtcgtgca ataccctgtc       240
     tgcagctaca tatacaagag gagagtacag cacctggaat ttcctatctt cccaagaggt       300
     atttgtgcaa aaaattgaaa gctcgagtga agacgaaaga ttaaaaaact cgcaattatt       360
     gtcttgtgct gaaacaattg cacctcgctt tcaattcttg gcacatacgt atgacatagt       420
     agagctagat tgcatgctgt agttagagtt gagcatatat attaatacat atatacatac       480
     atatgtacat ctaaccctct tggacgcaat aactacacat atacataact catttttact       540
     gcaatcgctg tcgccccttt cccctttctc gttttcgttg tgtcaaatat atgtatagtt       600
     gggtcgttgg ccaagcacgc ataccaatac gcagctgcag cggtgaattt tttcgtctcg       660
     ctttcgctct tcaccgttgc ttatcgttgt tcttttgttt ggcgcgcttg atccaaacca       720
     aacaccaagt gacgcgctac cctgttttcg tcgggtatat tcgtttggtg tcagtaggat       780
     ccaactatca attaagacaa agtcgtgcct cgcaaatcaa tttagcgtcg atcgttgtcg       840
     gtgcatacgc atacacaaca ttaattcttc agaactgcag cggtgaaatt tttcgttttc       900
     gcttgtcacc agtacagttc gttggtattc ttgtgtggtt ttcgtgtacg cgccagccaa       960
     gcgacgctct accctaaatt tttcgggtat attggttttt cacctcgttt gggtacaatt      1020
     acccattatt tcattgagtg cctcggcatt aaatacgatt attagaaacg atctttcgcc      1080
     ttcagttgct tgtattgaga atcaatatga cctcaaaagc caacaatatc gtccttgaag      1140
     agctgaagaa aaagcgcagt tgccgtgtca aaggcattcg tttattagcg gaccgtttag      1200
     aagcggggga tattccgctg gtattgacgg agctcgagtg cagactcgaa acgctgatgc      1260
     gtagcattga cacggcacgc gaacttcaag agaagattga agatatagac attgacgatg      1320
     aatttggagt cgagttggaa gaactctcaa ttgtcacaaa ggcaaaatta atgtctctca      1380
     tttgcgcatt aaagacagct gatgagacaa tacaggcagt accagcttat ggtggcccaa      1440
     ctcgtgctcg ccttccgaag ttagctctgc cgcagttcag cggcaactat tcggacttta      1500
     aaaacttcat aggtttattt gagactctag ttcataatga ccaaagcatt ccaattatcg      1560
     aaaagttcaa ccatttgctt tcgtgtctct ccggtgaagc gttgggaaca gttagggctt      1620
     tccaagtaac cgagaccaac tacgagaaag caatggctag cttaaaacgg gtctacgata      1680
     atgattgtct gatctttaaa aatcacattg atgccctatt taatcttccc aaaatgaccc      1740
     agcaatcagc atcgtcctta aggaacctta tcgataccgc ctcatccata tatggttcgt      1800
     tgttgtcgat aggcgatgat aaaaagatct cgaatgcgat gattattcat ctcgtcttga      1860
     gcagagtcga tccggtgacc aaagagaaat gggaagaaca gctcgattat gacaaactgc      1920
     cactttggac ggactgtgaa aggttgctta atcgcagaca tcagcatctt tcggccgaaa      1980
     attcggacaa accaaagcag gagcagaaag ctgtgccaag caagccgcat aatcggagct      2040
     cattcgcgtg ttccaccgcg aatactaaaa atcaacaatg cagctactgc aatgcgaaag      2100
     gccatttgtt gacagagtgc agtccatttg gtcggctagc agtaatgcaa aggttcgaat      2160
     tcgcaaaaac tgcatccttg tgcatcaatt gtctgcagcc aggccactct gtagtacgat      2220
     gcaaagctaa gaagtgtcga gtgtgtggct gctcacacca taccttattg cataggtaca      2280
     cagtggcgaa taaaagtcta gcgttaccat cacccccaga gaattcttct cctcctccca      2340
     atcagaatca accttccact tcgcatgctc tccatgcgac agctatggat agagttattc      2400
     tggctacgtc gatcgtaagc gtccgaacaa ataatggtga acatgttttg gcccgagctc      2460
     tgcttgactc ggggtctcaa accaatttta taactgagga cttagcacag cgcttacaga      2520
     tccgtaggga ggagtcgtgt atcaacttgc ttggtattgg tgaatccaat tcacaagtca      2580
     agaaaaagat acacacggtg gtgaagtcgc gaattactgg tagtgagttt tcggttgatt      2640
     tctggattct aaggtccatt tcggggtatc accctgatca gacacttaac gtgagtgact      2700
     ggaaaatccc gaagaactta ccacttgcag acccatattt cttcaagcca cagaagatag      2760
     atatgttgat aggtgcagaa acatttttcg aacttctatc tgttggtcag attcgacaag      2820
     gtcctgacta tccaactctg cagaaaacgc ttctcggctg gattgtgtcg ggcagataca      2880
     ctccaaaggt gactgccacc caagaagcta ggaattgttt gagttgtcga gaagagtcag      2940
     tgatccacat cgacaataca ttacaaaagt tttggtcact ggaagaattg ccgtcttcta      3000
     aaaagtcttt atctcctgaa cacaagttat gtgaaaagca ttatagaagg actactcagg      3060
     tcgtgccttc aggtcggttt gaagtaagac tgccgttcaa atcagatccc agtatcttag      3120
     gcaactcctt tgaagtggct aaacggcggt ttttatcgct tgaaaaaaga ttgtctcgtg      3180
     accccgagtt gcagaaaatg tacttggagt tcatggaaga gtacctctcc ttgggtcaca      3240
     tgtctaccac agacaacaca atccccaaaa ctccacatta tttcattcca catcagtgtg      3300
     tgttgaggcc tcaaagcacg tcgaccaagc tccgcgtcgt tttcgatgcg tcttgtaaaa      3360
     cgtcctctca ggtggccttg aacgacatat tgatggtcgg tcctacgata caggatgagc      3420
     tgtattcgac attgctccga ttcagactac acaggtacgc cttgacagcc gatgttaaga      3480
     agatgtatcg ccaagtctgg gtcgctgatg cggatagaca attccagctc atatagtgtg      3540
     gagaagagac ccgtctgagt ccttgagaat ataccagctc aacaccgtaa catatgggac      3600
     tggaccagcc ccatttttgg caattcggtg tttgaagagg ttgagtgagt ctgcaaaact      3660
     ctcattccct aaagctgctg aagttatcga ctccgacttc tatgtcgatg acatgttgac      3720
     tggtgctggt tgcgtagagg agttaaagac aattaagtct gatgtggctc aggttcttca      3780
     aaccgctggg tttgaattga ctaaatggtt ttcgaactca cctgaggtca ccgcatccga      3840
     gagcacagtt aaaccgataa cgatctcgga ctcagagtca actaaggcgt taggaatatc      3900
     gtggctgcca cacgaagacg tctttaagtt ccaaattgac acgtcagtta tgggtctccg      3960
     agcgacaaaa cggaacatct tatcggtgac atcaaagctg tttgaccccc ttggcttgtt      4020
     aagtccttta gtaattaagg gaaagatcct actgcaggag ctttggctca acaagctaga      4080
     ttgggatgag tcaattccaa tgaacttgga aacagcatgg aacttattaa aagaatcctt      4140
     gggtcagttg gagaagatta ccatacctcg atttgtgcat actgatccca tgtcaccgat      4200
     tcaagtacat gcctttgccg acgcatccat gagagcttat ggagcctgcg tctatatccg      4260
     tagaaagact gcagaaggtt tcaaggtctc cttgttgact gcaaagtcga aagtagcgcc      4320
     actcaagacg aaaacgctcc caaggcttga gttatgtgcc gctcaccttc tagcagacct      4380
     ttgtcaccga atcaaatccc tgctcaaggt tccaattgat aaaatgatat tctggtcaga      4440
     ttcagaagtt actcttcatt ggatcagatc ccacccttcg tcgttgtcaa cattcgttgc      4500
     gaaccgagta gcggagattc aagagtggtc aagtgaagct acgtggcggc atgtgccaac      4560
     aaaacagaac ccagcagaca tagtttcgag aggttgtgac gtagaggaaa tcgtgcagtc      4620
     gatctggttt ggaggaccag agttcttaaa gtttgaagaa gagagctggc ccagaaatcc      4680
     acacttcgag ctttccgaag aagagataca gatggaaagt cggaagaaat cggtcggact      4740
     gaccgtcgcg gccaagccaa attacttagt ggatgtaatc gagggatact cgtcacacct      4800
     caaactgcta agagtgttcg ttttcgtgtt ccgcttcatc cgaaaatgca aagacaaaag      4860
     tctcaacttt ggaaaaattc cgtcatccgt agaatacgac gaggcgtttc taaaaatagt      4920
     cgaaataaca cagaaaaatg agtctcaaga agatattgaa agggttcgta aaggcaccaa      4980
     gttaggcccc agtcttcagc gcttgaatcc cttcatccat gaagaggctg ggacatggtg      5040
     ctctttttcg ttgttgcgag ttggggggcg actagttaac gctcctatgt catataatgc      5100
     caagtttcct ttgttattga caaaacgctc gcagtttgtg cagacatacg ttcgctatct      5160
     gcatcaaacg aattttcatg ccggcccacg agcactcgtg agtatcctta gacagcgcat      5220
     ttggatagtg aatgctcagg cggtctgcag ggcgacagtt aggtcgtgta ttcgttgctt      5280
     taaatgcaag ccgctactcc agacccaaat gatgggcaac ttacccgcag accggctccg      5340
     tgctctccgc ccattttcag tatgtggcgt tgatttttgt ggcccagtct atacgactct      5400
     gaaaattcgt ggaaggcccc cttataagtc ctacatagcg ttatttgtct gttttgcgtc      5460
     caaggcggtt catttagaaa ttgtctccga tttgacgact aattccttct tgttggcatt      5520
     ccaaaggttc gtcggtcgtc gaggatgtcc gcaacgcgtg aactgcgaca acgcgacaaa      5580
     tttcgtcgga gcaagtcgcc acttcagcga actgcggagg aagatggagg cggaagcgga      5640
     cgcgatacgc gaatttgcgt caagaagcgg gtgcgagttt gccttcatac cgcctcgagc      5700
     accgcacatg ggcggacttt gggaggccgg tgtgaagtct gccaagggcc tactcctacg      5760
     cgccatcgga agcgctctcc tcaccgcaga ggagctggag accgtgctgg tcgggatcga      5820
     ggcagtgctc aactcgcgcc cgctaggacc cctaagccca gaccccaagc gacggagacg      5880
     cgctgactcc cgggcacctg ctgacaggcg ggccgctcat cgcaccccca gcacccagga      5940
     ccccggacca ggagggtctg agctgcttaa agcgatggcg gcttgtctcg tcagccaggc      6000
     aaatgttctg gcagcgatgg tcccgggagt atgtgctggg attacaaatc agatgcaagt      6060
     ggcaccagga ggagccaaac ataaaggaag gcgaccctag taatcgtcgc cgaggacaac      6120
     ctgccccctc aacagtggct cctaggaagg gtggtcggca caaccgccgg gcaggacgga      6180
     agggtcagag tggtcgagct aaggacgagc agcggagcca cgttcaggag gccgatacac      6240
     aaattggcgc ttctgccaat ggtttgaagc cttccaggcc ttcaacgggg ccgg            6294
//
ID   Nobel_LTR   repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   09-MAY-2009 (Rel. 14.06, Created)
DT   10-MAY-2009 (Rel. 17.07, Last updated, Version 2)
XX
DE   Nobel_LTR: LTR sequence flanking Nobel_I in Drosophila
DE   persimilis.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; Nobel_LTR.
XX
NM   Nobel_LTR.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-314
RA   Austin S. and Styles P.;
RT   "Nobel_LTR: LTR sequence flanking Nobel_I in Drosophila
RT   persimilis.";
RL   Repbase Reports 9(6), 1152-1152 (2009).
XX
DR   [2] (Consensus)
XX
CC   Nobel_LTR is the LTR sequence flanking Nobel_I in Drosophila
CC   pseudoobscura and D. persimilis. Solo LTRs are observed in both
CC   species. There are 25 copies of the LTR in D. pseudoobscura and
CC   110 copies in D. persimilis. Nobel_LTR is 314bp in length. 51 of
CC   the 110 LTRs in D. persimilis share a series of 5 mutations from
CC   the consensus sequence.
XX
SQ   Sequence 314 BP; 104 A; 53 C; 63 G; 94 T; 0 other;
     tgtagcgtca tttgaatatt aataattgtt attaggatag tatttcatga agtctagtgt        60
     aagttaggct agggcaaagc gggagcgcaa taaaagctcg ttctctcgct cttggcgaat       120
     tcgccccgct ttgccaccgt aggtaaggta ggcttagaag aaattgtttg aatatattga       180
     aaagaagtcg agaaaaatcc ctgaaatcga acgcacgcac cccttttctt tcgtcgtatt       240
     aaaataaaaa aaaaattgca gtcacccaag aaatttcggt attggttatt tagaaaaact       300
     attctaaaat ttca                                                         314
//
ID   NOF_FB      repbase;    DNA;    INV; 4347 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 4)
XX
DE   Putative MuDR DNA transposon from Drosophila.
XX
KW   MuDR; DNA transposon; Transposable Element; NOF_FB.
XX
NM   NOF_FB.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RP   1-4347
RA   Smit A.F.;
RT   "NOF_FB - Putative MuDR DNA transposon from Drosophila.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
DR   [1] (Consensus)
XX
CC   gb|X15469|FB|FBgn0002949|NOF FB 4347bp Derived from X51937
CC   (g8297) (Rel. 44, Last updated, Version 6).
XX
FH   Key           Location/Qualifiers
FT   CDS           704..3871
FT                 /product="NOF_FB_1p"
FT                 /translation="MPAKPQVDGHTLVDAFCCANIFTETGALKPRSDKVWM
FT                 DISNQLKGAISAKTLNFYARINRNNMITVVKERCGIQQLDTSANLTLNSTF
FT                 PDDDPEFQITEASKNGPLPILYFNLELDLELWRSIAPKKDQKTEKLQPNWT
FT                 DTMAKLIYKKVPLPCAFNFRKAKLSDKVDNIWLRIEGYCNDCSSILKGHCL
FT                 VKPDEQCGIMISVSVPDTRGIPHNKKRRCTGSRRLEIGNELILKKAALWRK
FT                 EATDNMNDDDPEPSYIPNLPTLRKLREEATNRHLGITKDRDPVSSLYLKKY
FT                 EGELAGCILDIGLDEFFCIYCTGTQVKTYASRIKTIRKISIDATGSVVLPI
FT                 QKPNGDSSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRFISKSG
FT                 HFPLEVVSDFSLALLNGISLSFNECRIATYIKKCFHSLLMEERTDLPPCYI
FT                 RLDIAHLIKMICRKNVFKSKLPNLKDFYTRCIGLATTCETKDSFAELIKSV
FT                 LIVALSQSSGEDEKGDILSSYRNEKYLLARIATFTAPDHKETIEDNCIPED
FT                 QEEIDEDVTDFISNIKIAAEEEALNCNSVNCRPNPYFLPELMPPLIKLCKY
FT                 FVLWTNVMKEKFCSKYDVGSSALVEAYFKDLKNTDMSIFHRPVRADKFVVQ
FT                 HIRCIEAVCKLERAAMKRKTVKTPSFIKENAPKKMCSKETKGFLEEILEES
FT                 EVEYLLQEENWKVKNKTIKPTEGNDAEDNDTDDENKEMDLSEQPKEKPRGK
FT                 YLKKCPNVELLYNRPHRRKQDEILHNGGSMGPVWIGKQLLQFKNTCPFDSL
FT                 VEILSTAYIDNFYYKSLLDDFYTDNLTIELVKKYAVEGVSSSLYCDRGLVL
FT                 KSFFDEKHQIIKCDANIGSFIEKALNGVPSASSHRTHIKNNHDCRNQKYIH
FT                 HRLEVIDVEKVGHLDVQEVVIPFIDEFFARTDGECKICGGQQILERQPGPH
FT                 VILDIEFAMDAFHQIHHNGLPGTTTLLQVPEEILIQEKKYILSGAIEYVPA
FT                 MGGEIGHYIAYCRRVIGSWEVHNDMCRQWKKFSALNTKMTLHILIYTRKN"
XX
SQ   Sequence 4347 BP; 1445 A; 775 C; 885 G; 1212 T; 30 other;
     tatattctat tgcccaccat ataaacacgt gccactttcc tagttttagg atctgcctac        60
     ataacacgtg cagacgcaca ggtgtttctg ggtttatata gaccaaaaat tggttccgat       120
     tgccaatctt gtaatttaca gtttaccagg taattacata attttcaaac ctcactttat       180
     gatagggtcc aattttttac ctgtgacaaa gtgttaaatt ttttaagaat gggtttttca       240
     tggcaggtca gaatcctcta taaaatctaa aacacttgtc ggtatttgaa aatcgctctc       300
     ctccttgatt ctcatattag gtgtaaaaga taaatccgga actcataatt aaaatatttt       360
     ttatgtgaaa aagttgtgcg cgattttaac tacgcttacc cagtgctgga aaagttaaag       420
     ttgttttgtt tttcaaagaa agtgaaagtt gctaagcacg aacttaagaa atctgagtga       480
     ttgtgttaaa tttatttgaa tccttgtgaa ttttgttgac agtcttttta aagacttgca       540
     aaattttcat attattcggt tcttgctttt atttttatac aacgcgtttt tcctttaggc       600
     atacctttat acatttacag tgtaaacaac agtgtaaaac gtgtaaatca gtgcaaaata       660
     gtttttttta tttactccat aaaaaataag tgttactgtc aggatgccgg ccaaaccgca       720
     agtcgatggt cacaccttag tggatgcatt ttgctgcgcg aatattttta cggagactgg       780
     agctcttaag ccaagaagcg ataaagtttg gatggatata agcaaccaat tgaaaggagc       840
     gatcagcgcg aagacgctta atttctacgc cagaatcaat aggaataaca tgataactgt       900
     ggttaaagaa cgatgtggaa ttcaacagct ggatactagt gccaatttaa ctttaaatag       960
     cacatttcct gatgatgacc cggagttcca gatcaccgaa gcttcaaaaa atggaccatt      1020
     gcctattttg tactttaacc tggagttgga cctggaattg tggagatcaa ttgcccccaa      1080
     aaaggatcaa aaaactgaaa aactgcaacc taactggacg gatactatgg caaagttgat      1140
     atacaaaaaa gttcctcttc cgtgtgcatt taattttaga aaagctaaac tttccgacaa      1200
     agtggataat atttggctac gaattgaagg ctattgcaat gactgcagct caattttaaa      1260
     gggacattgc cttgtgaaac ccgatgaaca atgcggcata atgatatctg tttcagtacc      1320
     ggacacacga ggtatacctc ataataaaaa acgacggtgc actggatcga gacgacttga      1380
     aattgggaac gagttgattt taaaaaaagc tgcattgtgg aggaaggaag ccaccgacaa      1440
     catgaatgat gacgacccag aaccgagtta cataccaaat ttaccaaccc ttcggaaact      1500
     tcgtgaagag gcaactaaca gacacctagg aattaccaag gatcgggatc cagtttcatc      1560
     attatacctt aaaaagtatg agggtgaatt ggctggatgc attcttgaca ttggattgga      1620
     tgaatttttc tgcatatact gcacaggaac ccaagtaaaa acatatgcat caaggataaa      1680
     aactattaga aagatttcta ttgacgcaac tggaagcgtg gtgttaccca tccaaaaacc      1740
     aaacggtgac tctagttatg tttttctgta ccaaattgta atggagggtg acgacagtat      1800
     atttccagtt tttcagatgc tgtcggctaa acatgacaca gccagcatac agttttggtt      1860
     aagcagattt atatcaaagt cggggcattt tccactggag gttgtatctg atttttcctt      1920
     ggcattgcta aatggaataa gcttaagctt taatgagtgt aggattgcga cgtatataaa      1980
     aaaatgtttc cacagccttt tgatggagga acggacggat ctgccaccct gctatattcg      2040
     acttgacatc gcccacctaa ttaaaatgat atgccggaag aacgtcttca aaagtaaatt      2100
     accgaacctc aaggattttt atactagatg tattggtctt gcaacaacgt gtgagacaaa      2160
     ggacagtttt gcggaattaa ttaaatcagt actgattgtc gcactgagcc aatcctcagg      2220
     ggaagatgaa aaaggagaca ttctttcaag ttacaggaat gaaaagtatc tgctcgccag      2280
     aatagctaca tttactgccc cggatcacaa ggagaccatt gaggacaact gcataccaga      2340
     ggaccaggag gaaattgacg aggatgttac ggactttatc tctaatatta aaatcgctgc      2400
     cgaagaagaa gcgttaaatt gcaattcggt caactgtcgg ccaaatccgt atttcctacc      2460
     tgagctaatg ccaccattaa ttaagttgtg caaatatttt gttttatgga caaacgtgat      2520
     gaaggaaaag ttctgttcca aatatgatgt cggctcttcg gctcttgtgg aagcctattt      2580
     caaggattta aaaaacacgg acatgagcat attccaccga ccagtgagag cggataaatt      2640
     cgtggtgcaa catatccgat gcatcgaagc tgtttgcaag ctggaacgag ccgcgatgaa      2700
     acgcaagacc gttaaaactc ccagctttat aaaagaaaac gctcctaaga aaatgtgcag      2760
     taaggaaacc aagggatttc tggaggaaat acttgaagaa agcgaagtgg aatacctttt      2820
     acaagaagaa aactggaagg tgaagaataa aacaataaag cccacggaag gaaatgatgc      2880
     tgaagacaac gacactgatg atgaaaacaa ggaaatggat ttaagtgaac agcccaaaga      2940
     aaaaccaagg ggaaaatatc tcaaaaaatg ccccaatgtg gagttattat acaatcgacc      3000
     acatcgaagg aaacaggacg aaattttgca taatggtgga tcaatgggac ccgtctggat      3060
     tggcaaacaa ttattgcaat tcaaaaatac ttgtccgttt gactctctag tggaaatatt      3120
     gtcgaccgca tacatagaca atttttatta caaaagccta ttggatgatt tctacactga      3180
     caacttgacg atagaattgg tgaaaaagta tgccgtcgag ggagtttcgt ccagtctcta      3240
     ctgcgacaga ggtctggtcc taaaaagttt ttttgatgaa aaacaccaga ttataaaatg      3300
     cgacgcaaat attgggtctt ttattgaaaa agcgctgaat ggagtaccca gtgcgtcaag      3360
     tcatcggacc catataaaaa acaaccatga ttgcaggaac caaaaatata tccaccatcg      3420
     gctggaggtt atagatgtcg aaaaagttgg ccacctcgac gtccaggagg tagtgatccc      3480
     ctttattgat gagttttttg caagaactga tggagaatgt aaaatatgcg gtggacaaca      3540
     gatccttgaa aggcagccag gaccgcatgt catacttgat atagaatttg caatggatgc      3600
     ttttcatcaa attcatcata acggtttacc aggaacgacc actttacttc aagtgccgga      3660
     ggaaatttta atacaggaaa agaaatatat tttaagtggt gccatcgaat atgttcctgc      3720
     gatgggaggg gaaattggac attacattgc atattgccgc agagtcattg gatcttggga      3780
     agtgcacaac gatatgtgca ggcaatggaa aaagttctca gctctaaata ccaaaatgac      3840
     actccacatt ttgatataca cccggaaaaa ttaatgttta tttttaagcc ttgtttaaaa      3900
     gtgtaaaaaa tatttgttgt taaaaattac aatcttaagt cctttgcaaa cgttgnnnnn      3960
     nnnnnnnnnn nnnnnnnnnn nnnnncaaaa cttaaccctt tttcactttt atacctaata      4020
     taaagaggtc cgtaaagtat caaggaggag agcgattttc aaataccgac aagtgtttta      4080
     gattttatag aggattctga cctgccatga aaaacccatt cttaaaaaat ttaacacttt      4140
     gtcacaggta aaaaattgga ccctatcata aagtgaggtt tgaaaattat gtaattacct      4200
     ggtaaactgt aaattacaag attggcaatc ggaaccaatt tttggtctat ataaacccag      4260
     aaacacctgt gcgtctgcac gtgttatgta ggcagatcct aaaactagga aagtggcacg      4320
     tgtttatatg gtgggcaata gaattta                                          4347
//
ID   NOMAD_I     repbase;    DNA;    INV; 6572 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   NOMAD_I is an internal part of retrovirus NOMAD.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; LTR-retrotransposon;
KW   internal portion; NOMAD_LTR; NOMAD_I.
XX
NM   NOMAD_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Whalen H.J. and Grigliatti A.T.;
RT   "Molecular characterization of a retrotransposon in Drosophila
RT   melanogaster, nomad, and its relationship to other
RT   retrovirus-like mobile elements.";
RL   Mol. Gen. Genet 260(5), 401-409 (1998).
XX
RN   [2]
RP   1-6572
RA   Kapitonov V.V. and Jurka J.;
RT   "NOMAD_I.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [2] (Consensus)
XX
CC   NOMAD_I is an internal part of the NOMAD endogenous retrovirus
CC   flanked by the NOMAD_LTR long terminal repeat.
CC   NOMAD was active recently since its provirus copies are flanked
CC   by identical LTRs and its ORFs does not have many false
CC   stop-codons.
CC   NOMAD generates 4 bp-long target-site duplications [1,2].
CC   Originally reported consensus for TANA target site [1] is
CC   wrong since NOMAD does not have strong preference for its target
CC   sites [2]. There are about 10-20 copies of NOMAD in the genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           1150..2400
FT                 /product="NOMAD_I_1p"
FT                 /translation="MEETLRALSESLNALTNVVTGIKEDIKKNNDRLAILE
FT                 QERGNADPTVDQPQPLVRARTEYELREISVLPDCVKELQAFEGRQEAYLSW
FT                 INRAQSILTEYDLIKTRPLYRAIVLHIRQKIRGHADMALAAYGVQDDDWDD
FT                 IKRVLALHYADKRDLRTLEHELGAMCQGSRPLDRFYMDVNGHLSLILNNLK
FT                 ARNHPREVVNALIETYRDKALDVFIRGVGRDCSKHLLVRSPKNLPEAYSFC
FT                 MGLQNVMSRNFTAQNYQPSGAPRFAGPYQHQARPPFRTPFSPGSGRFSQNS
FT                 YRTQGPRQAIKMESNRSGQSYQSGYSGRQEEGSGIKRMSEGNNPFQKAQRL
FT                 YHMELAPPPLAPAASGDNQGRSHEGYYDDESQAVERSNNYPPQKNVEGVTD
FT                 APHNLETEGGANFMTNASPVYRT"
FT   CDS           2355..5552
FT                 /product="NOMAD_I_2p"
FT                 /translation="GRGKFYDQRLSSVPYLEYATERGERLKFLIDTGANKN
FT                 FISRRLAAGCTTVRKPFSVLSAAGNIMITHRLVGKFFKPLGNDSDITFFVL
FT                 PNLHSFDGIIGDDTLKDLKAIVDRKNNCLIITPGIKIPLLARASINVNPLL
FT                 AAEHPDGTQEILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAK
FT                 SYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQY
FT                 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMK
FT                 ESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVY
FT                 IDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIV
FT                 TADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPL
FT                 TNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTK
FT                 PFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA
FT                 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYN
FT                 CELIYKPGKSNVVADALSRIPPQLNQLSTDLDANPEDDMQSLATAHSALHD
FT                 SSRLIPHVESPINVFKNQLIFDTTRSKYLCEHPFPGYTRHLIPLKDGSLAD
FT                 LTNSLQSCLRPVIINGVKIPEAHLQRFQSICLANFLLYKIRITQRLVADVS
FT                 GAEEICEIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCK
FT                 LYKYERHPNKPNLQPTPIPNYPCEILHIDIFALEKRLYLSCIDKFSKFAKL
FT                 FHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLDID
FT                 LYYAPTQKSEVNGQVERFHSTFLEIYRCLKDELPTFKPVELVHIAVDRYNT
FT                 SVHSVTNRKPADVFFDRSSRVNYQGLTDFRRQTLEDIKGLIEYKQIRGNMA
FT                 RNKNRDEPKSYGPGDEVFVANKQIKTKEKARFRCEKVQEDNKVTVKTRSGK
FT                 IFHKSDLRN"
XX
SQ   Sequence 6572 BP; 2115 A; 1501 C; 1392 G; 1564 T; 0 other;
     ggcgcccgaa cagggaccgg caatgtccgg ccgataaaag tgatacgaaa aaattgtgga        60
     aatttgtgcg taaaaatagt ggtggtgtgc ataagtcaga ttaagatctg aaatccataa       120
     atgaaaaaga agtgctgcgt gagctgtgta taaaatgata aaatagcaat tacccgctgc       180
     cggggggaac tacgcccatc ccggggcgca acaaatattg cataattcaa taaaaggtgt       240
     aaaatttcta aaataaaaat gtaaacctat gttgcgccaa gacctaattt aaattaataa       300
     aacaacgacc cgctaccgga ggacgccacg tcgcccatgc cgagcgcaaa agttgtacga       360
     tacctataac ataattaaaa cacgatcaac ccactgcggc ggtacggctt gtgggaaaat       420
     tttttttttt ttctctcctt gccaattcgc gagtgcaaaa gattgtgtat aataaaccaa       480
     taattaacca ttgcagcagt ttacctgcgg cagtacgagt aatatgagcg cccagagtga       540
     taaggtggtg tgtggcagct tgttggatac gttaagtggt gtggaatgca cccaaaaaaa       600
     accgcccaac aagttgtgtg gcggccgtac cttagtaggc aaccagccaa aagggatact       660
     acggaaccac cgtgcccagt gccgaaataa attagaggtc atcaataaaa aactgtaaca       720
     gcacgcacgc aaggaaaaaa tattgcaaaa tggaatagcg cacaaaaatt gtataaacac       780
     atgcacaaca ccacaattca aaggaaaaca agtatagtac aatttcccca atttcccgaa       840
     acgaaatgaa taaaaattct ctacaataca ctaattcacc tttttttact tatcccaata       900
     gaatattcat gctgtagggg tacaacctaa acgacgaaaa ctaataaaga gcatacaagg       960
     gtgagtgaaa tatttcatta aactttattg ccatatttgc taaatttaga gaaataaaga      1020
     aaaagcaaag aagaacagat attctttttt atcgggttaa aaccgttgtc tcacatttcc      1080
     gtaaagtaat aacgaattct gttgccttga aagcttcctg catctttcca acgcaaacta      1140
     aaaatcaaaa tggaagagac cctgcgtgct cttagcgagt ccctcaatgc cctgaccaac      1200
     gtggtgacag gcattaagga agatattaag aaaaataatg ataggttggc tattttagaa      1260
     caggagcgcg ggaacgctga ccctacggtc gaccaaccgc aacccctggt gcgcgcacgc      1320
     accgagtatg agctgagaga gatatcggtc ctccctgact gcgtcaaaga actgcaggcg      1380
     ttcgaaggac ggcaggaggc ttacctgtct tggataaaca gggcacagtc aatactgacc      1440
     gaatatgact tgattaaaac cagacccctg tatagggcaa ttgtcttgca tattagacag      1500
     aaaataaggg gacacgccga catggccttg gcggcctatg gcgtccaaga cgacgattgg      1560
     gacgacataa aacgagtctt ggcgctgcat tacgcagaca aacgagactt acgtacgctt      1620
     gagcatgagc ttggcgctat gtgccaaggt tctagaccac tagataggtt ctatatggac      1680
     gttaatggcc atctctcgtt gatcttaaat aacttgaagg ccagaaacca ccctcgtgaa      1740
     gtagtcaacg ctttgataga aacctataga gacaaggctt tggatgtttt tatccgagga      1800
     gtggggagag attgttccaa acacttactt gtccgcagcc cgaagaatct accagaggct      1860
     tactcttttt gtatgggatt gcagaatgta atgtcaagaa atttcacagc tcagaactat      1920
     caaccgtcag gtgccccaag attcgcaggc ccatatcaac atcaggccag gccaccgttc      1980
     cgaacccctt tttctcctgg ttcaggcaga ttttcgcaaa actcctacag aactcagggt      2040
     cctagacagg ccataaaaat ggaatccaat cggtcgggtc aatcttacca atcaggatac      2100
     agtggtcgcc aggaagaagg ctccggtatt aagagaatgt ccgaaggaaa caacccattc      2160
     caaaaggcac aaagattgta ccacatggaa ttggcaccac ccccgctagc cccggcggct      2220
     agtggagata accaaggacg ttcacacgag ggttactatg atgacgagtc tcaagctgtc      2280
     gagagaagca acaattatcc tccgcagaaa aacgtggaag gagttacaga tgctccacat      2340
     aaccttgaga ctgagggagg ggcaaatttt atgaccaacg cctctccagt gtaccgtact      2400
     tagagtatgc tacggagagg ggagaaaggc tgaagttttt gatcgacacg ggggcgaaca      2460
     aaaactttat tagccgaaga cttgcagccg ggtgtaccac agtccgtaaa cccttctccg      2520
     tactgtccgc tgcgggtaac atcatgataa cgcaccgcct agttggtaaa ttcttcaaac      2580
     cactagggaa cgactcggat attacctttt tcgtactacc gaatttacat tcctttgatg      2640
     gtatcattgg cgacgatact ctcaaagact taaaagccat agtggatagg aaaaacaatt      2700
     gtttgataat aaccccagga attaaaatcc ctcttttggc gagagcttca ataaacgtta      2760
     acccgctact cgccgccgaa cacccagatg gtacacaaga aattttgaat tcccttctcg      2820
     gggaatttcc ccgcatcttc gagcccccct tatctggaat gtccgtggag acggccgtca      2880
     aggctgaaat ccggacaaac acacaagacc cgatctatgc taaaagttat ccttacccag      2940
     tcaacatgcg cggagaagtc gaacgtcaaa tcgatgaact gctgcaggac ggtataattc      3000
     gaccctctaa tagcccttac aattccccta tctggatagt cccgaagaaa cctaaaccaa      3060
     acggagaaaa acaatatcgc atggtagtcg atttcaagcg gttaaatacc gtcaccatac      3120
     ccgacactta ccccatccca gatataaacg ctacgctagc cagccttggc aatgccaaat      3180
     actttaccac cctagatttg acttctggat tccatcaaat ccacatgaag gaaagcgaca      3240
     ttccaaagac agctttctct actctaaatg gaaagtacga gttcctccgt ctaccattcg      3300
     gtttgaagaa tgcacctgca atcttccaaa gaatgatcga tgatattttg cgcgagcata      3360
     ttggcaaggt ctgctacgtt tatattgacg atatcatcgt cttcagtgaa gattatgaca      3420
     cacactggaa aaatctccga ttggtattag cgagtttatc aaaagctaac ctccaagtga      3480
     accttgagaa gtcgcatttt ttagacacgc aggtagaatt tttaggatat atcgtcacgg      3540
     ccgatggcat taaggcagat ccgaaaaagg tcagagcgat tagcgaaatg cctcctccga      3600
     cctctgttaa ggagttaaaa agatttctag gcatgacctc gtactacagg aagttcattc      3660
     aggactatgc gaaggtagca aagcccctta caaacttgac gcgtggattg tacgctaata      3720
     taaagtcttc acaatcaagc aaagtgccaa ttacattaga cgagacggcc ctacagtctt      3780
     ttaatgattt aaaatcaatt ctctgttctt ctgaaatact ggcgttccca tgtttcacta      3840
     aacctttcca tctaaccacg gacgcttcta actgggccat cggagctgtc ctctcacagg      3900
     acgaccaggg tagagatagg ccgatagcgt acatttcccg ttcattaaat aagacggagg      3960
     aaaactacgc tactatcgaa aaggaaatgc tcgcgataat ttggtcattg gacaatcttc      4020
     gggcttactt atatggcgct ggtactatta aagtatatac tgaccatcaa cctctaacgt      4080
     ttgccctagg caacagaaat ttcaatgcga agctaaaacg ctggaaggct cgtatagagg      4140
     aatacaactg cgaactcatc tacaagcctg ggaaatctaa tgtggtggct gacgcgcttt      4200
     cacgcattcc gcctcagctt aaccagttga gcaccgattt agatgctaat cccgaggatg      4260
     acatgcagtc tttggctact gcccatagcg ctttacatga cagttcacga ttgattcccc      4320
     acgttgaatc tccaatcaac gttttcaaga atcaactcat ttttgacaca accaggtcaa      4380
     aatacttatg cgagcacccg ttcccaggtt atactcgcca tctgattcct ctcaaagacg      4440
     gatcacttgc cgatttaacc aactcgttac aatcgtgtct acgacctgta ataattaacg      4500
     gcgtcaaaat cccggaagca catttgcaac gctttcagtc catctgctta gcgaattttc      4560
     ttttatacaa aattcggata acgcagcgcc tagtggcgga cgtgtctggc gcagaggaaa      4620
     tttgtgaaat aattgaaaaa gaacaccgta gagcacatag gggccctacg gagattcgtc      4680
     tccaactttt agaaaaatat tatttcccgc gaatgtccag tacgatccgt ctgcaaactt      4740
     cctcatgtca gtgttgcaaa ctctacaagt acgagagaca ccctaacaaa ccaaacctac      4800
     aacctacgcc aattcctaac tacccatgtg aaatacttca catcgacatt tttgcgctcg      4860
     aaaaaaggtt atacctaagt tgtattgaca aatttagcaa gtttgccaaa cttttccatc      4920
     tgcagtcaaa agcatctgtg catttgcgag aaactttggt ggaggcccta cattacttca      4980
     ccgcccctaa ggtcttggtt tcggataacg agcgagggtt gttatgcccc acagtgctca      5040
     actatcttcg gtctctagat atcgatctgt attatgctcc aacccagaag agcgaagtaa      5100
     atggtcaagt cgagagattc cactctacgt tcctagaaat ttatcgttgc cttaaagatg      5160
     agctccctac cttcaaaccc gttgagctgg tacacatagc agtggaccgc tacaacactt      5220
     ccgttcactc ggtaacgaat cgaaaaccag cagacgtttt tttcgaccgc tcgtcaaggg      5280
     taaactatca gggtctgaca gatttccggc ggcagacttt agaggacatc aagggcttaa      5340
     ttgagtataa gcaaattaga ggtaatatgg ctcggaataa aaatagggac gagccaaagt      5400
     cttatgggcc gggagatgaa gtttttgttg caaataagca aataaaaaca aaggaaaaag      5460
     cgaggttcag atgcgaaaag gtacaggaag acaacaaggt aacagttaaa accagatcag      5520
     gaaaaatttt ccacaaatct gatctaagaa attgagacgt ggctttcaca tttaaaaaag      5580
     aaacgcgaaa aagaataacg aaagtaataa aagtacgttg tggcagctaa tgaaatattc      5640
     cacccatgca taccctatat aaaaaaaaca ttaataaaaa aaaaaaaaaa aaaaaaaaaa      5700
     aaaaaaaatg agttaagaaa tacaaaaaga aatacaaaaa aaactataaa aaaaataata      5760
     taaaaaaata cagattataa gaaataagaa ataagaaata taaaaaaata aaaatataag      5820
     tacacaaaat gtaccgtacc cccacacact acgtagtctt agaacaactt agacgaccag      5880
     atatttacga attgtctttt tgtaagcgcg atttctgcat gcggcgcaaa tcccgctcac      5940
     tggactggct ggggtcggct tggaaatggg tagctggatc tccagatgct gctgattgga      6000
     acgccgtctt ggccgcgcaa gcgacggctt cgaggaactg caaaaactgg aggaggctag      6060
     ctgtatccct cggctactga agtaaccaac gagtggttaa gcaagtcgac gatggaatgc      6120
     tcctcctgac caacttcaac ggaactctaa gaacggctgc agagaactac gacctgatcg      6180
     gctcctttat catccaattc gacaatgaga cgataatggt caacggtcaa aactattcca      6240
     gttactcggt cagtcatcta atggcgatgc cggccgtgtt gagccacata acggccagca      6300
     actttcaact ttctctggaa tacgtccacg acgtgagcat gaagaatttg gaaaagatgt      6360
     ccaacatggc gagtgagcta ctagcctctc ttctcaccga ggcggcactc gcaatctgca      6420
     tattcctagg cttttatttc ctatggaaga agctgatgtc caccaaaggc atgcccgatg      6480
     tccgcgagat tgccgcaaac ttagaagcat tgggccaaac cgagctgaac aaggctcact      6540
     aatctgcggg acgcagatct tgagggggga gg                                    6572
//
ID   NOMAD_LTR   repbase;    DNA;    INV; 518 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   NOMAD_LTR is a long terminal repeat from the NOMAD retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; LTR-retrotransposon; NOMAD_I; NOMAD_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Whalen H.J. and Grigliatti A.T.;
RT   "Molecular characterization of a retrotransposon in Drosophila
RT   melanogaster, nomad, and its relationship to other
RT   retrovirus-like mobile elements.";
RL   Mol.Gen.Genet 260(5), 401-409 (1998).
XX
RN   [2]
RP   1-518
RA   Kapitonov V.V. and Jurka J.;
RT   "NOMAD_LTR.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   [2] (Consensus)
XX
CC   Termini of NOMAD_LTR originally reported by [1] have been
CC   modified by [2].
XX
SQ   Sequence 518 BP; 118 A; 130 C; 147 G; 123 T; 0 other;
     agttaagaac cctcttcttg cgctcttcgt caggactcac cagcgctcgg ctctcgtgtt        60
     ttcgggcccc gtcagcaggc gactcggggc ctgtctagta acatgttcgt gtaagttacg       120
     aaccctcttc ttgcgatctt cgtcaggact caccagcgct cggctctcgt gttttcgggc       180
     cccgtcagca ggcgactcgg ggcctgtcta ggaacatgtt tgtgtatgtg tgcattcgga       240
     acaagtgccg ttggtcgcac tcagggtgag gggtcaacgg gggaagcgga tataaaagca       300
     gcggggcggg agaagaggcc ccagtgtcga acggacacat aacggaaccg ctagcagatc       360
     gcgaactgaa tcttaaaata aagctaatcg taaactcgaa ccctcttaac tatcttgact       420
     attatttgga gaaccacagc atgttggttg tcatatcaag gtgaggtatg cggcagcgag       480
     tgccgagaac cctgatgcaa gtggaacttg cgttaact                               518
//
ID   NonLTR-2_PPo repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; NonLTR-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-347
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3121-3121 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. Likely 5'-truncated.
XX
SQ   Sequence 347 BP; 109 A; 58 C; 37 G; 143 T; 0 other;
     ttataacagt gtttcaaatg atctagacat cttcaatcct aaatacttag tcttcaaaaa        60
     tagtgtcaca aaaatactgc aataactatg tttgtcctta cccttcccta catttttcct       120
     ctactttcct attgtttgat taaacctaat aaatttaagt tttaaaacaa gaattaaata       180
     ttaagtacat tatacttgca ctttgtcgct tttttcatag ttgtcttgta tagtcatgtt       240
     gtgtacacct acttcggttt aaaacctagt ttctctagtt cattattctc atttgtaatt       300
     atgtatttag ttttaagctg tttggtgaac ctaataaaat aaataaa                     347
//
ID   NonLTR-3_PPo repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; NonLTR-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-422
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3122-3122 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Likely 5'-truncated.
XX
SQ   Sequence 422 BP; 144 A; 64 C; 63 G; 151 T; 0 other;
     cccttttgtc actaaggcag ccagaacaaa cttgggtctt tattcaccta taaatcggct        60
     aatggccaca tacaatgctt tgcataactc ttgtgcgtgc gtcaaaggag ccagagataa       120
     aaggcctata atcgacatct tctccaacaa atggccaaca tttaaaaaat atctacgtga       180
     ggttatcact taaatttaat ttttactttt tgggttcaac aaaataaata aaaaaaaaga       240
     taaaaacata ttctgtctac tgttgttact gttgttgttg ttgttatttt tctatgtatg       300
     tcgtgtaaac ctataattag gacaaattat ctgcatgtta cttattgtat tgtgtaaaaa       360
     tgtatgtgtt ataattttgt cctgttggtt tatcttaata aataaataaa taaataaata       420
     aa                                                                      422
//
ID   NonLTR-4_PPo repbase;    DNA;    INV; 406 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; NonLTR-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-406
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3123-3123 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Likely 5'-truncated. It includes a
CC   sequence similar to non-autonomous Helitrons.
XX
SQ   Sequence 406 BP; 140 A; 65 C; 65 G; 136 T; 0 other;
     tctgccgcag ctgctcaacg accttgacag cgttgtgctc gaacaaataa ttaaaaaacc        60
     atcaaaatgt aaaattaatt tgaaatcggc cctgttaaaa caacaaatat gtaatgcgta       120
     aattaaaata atctatacta atattataaa gaggagagat ttgtgttttt gtatgcattg       180
     tattggctcg ggggctgctg ggccgatttc aaattctttc accgttgaaa aacagcgttg       240
     tttttgagta aaatagtcta agtttcttta ttatttttca tatgctataa actaagcgac       300
     cagtggtcac acataaatcc tgtgggtttc tgtaccactt ataacgtctc ttattgtact       360
     tttaaattta tgcttttgtc taataaataa aaaaaaaaac aaaaaa                      406
//
ID   NotoAg1     repbase;    DNA;    INV; 5540 BP.
XX
AC   AB090823;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon NotoAg1 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; NotoAg1.
XX
NM   NotoAg1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5540
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
DR   EMBL/GenBank/DDBJ; AB090823; Positions       1    5540.
XX
FH   Key           Location/Qualifiers
FT   CDS           552..1838
FT                 /product="NotoAg1_1p"
FT                 /translation="MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQ
FT                 EYTERRELIAREEMEKMRAAHERDRTALNKLLMQGAGTSSHRAAATPTTPT
FT                 PQPRRMQQHQEKQRQPPQQQHQQIGPSTSAAPPQLLVSGASFDPEGDDGQG
FT                 SFAEVVRHKWGRNTGKPRGYQQQQSQSHRQVVIGTQQECLQPEQQHQRQQQ
FT                 HTVRRHNVDKVEVIPGENQTWETVYQMVKDAIKFDPAHKDLADHVVIGRRT
FT                 HAARLRIQLSCTADSTLMLQEVQQIIGNAGIARVITEMGEILITHIDPLAS
FT                 EEDLKEAVDRKLQASAGVTKVSMWQLSDGTKRARVRLPAKAAKQLVGQKLT
FT                 VSCCISNIKEAPAINLQQQRCYRCLERGHIARECRSPVDRQKACIRCGAEG
FT                 HLAKDCNAEVKCAVCSGPHRVGHSDCVRPMLRCPH"
FT   CDS           1829..5290
FT                 /product="NotoAg1_2p"
FT                 /translation="MSSLRVLQLNVDHCREGQGLALQSAREHRADVLILSD
FT                 MFTPPNNNGRWEFDASRKVAIVATGSYPIQRVWGSTVPGLVAAKVAGIDFI
FT                 SVYAPPSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRRNNLR
FT                 GEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATPSLVLHDTWE
FT                 VLDFARSDHQLIRFETNSPALAARRVKLSQRNRSQQRSPRRDPPINRQHTP
FT                 CAGRRWKTKQFRENSFLLALKDVNFAEQAVTDADIVEMMTRACDEVMQRAN
FT                 HLSSNPYRDLYSWSPELERLRGICLAARERLRLITDLQERSFVAADHRTAK
FT                 RNLEKAIRASKRQQIDALIDTAEDNEFGGGYRVVMSTLRGSRVPQEKDPIE
FT                 LGRIVSDLFPNHPPVPWPYVSDVTQGEASVDDVTPRELQDIAHQMATRKAP
FT                 GLDGIPNAAVKAAIGMYPDVFCRMYQDCLTRGTFPSEWKRQRLVLLSKTGK
FT                 PPGESSSYRPLSMLDALGKVLEQLILNRLNKHLEDPDSPRLSDAQYGFRRG
FT                 RSTFSAIQRVVDAGRRAKSFRRTNHRDKRCLMVVALDICNAFNTASWQSIA
FT                 DALRNKGVPSALLNIIGSYFEERKLIYNTSAGPVERHISAGVPQESILGPT
FT                 LWNVMYDGVLGVELPPGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVD
FT                 RWLREHHLELAHAKTEMTVISSLQQPPEDITITVGGTEVPFSRTLKYLGVR
FT                 LHYNLSWVPHVKAVIQKATQIVQAVTQLMPNHRGPKTSRCRLLAAVADSTM
FT                 RYAAPVWHGALTNRECRSLLKRVQRKAAIRVARTFRTVRYETAVLPAGLVP
FT                 ICRAVAEDTRVHSRRGTGVSSSELRKEERQRTIEEWQTTWDADAAADNASR
FT                 YVRWAHLVIPDVGAWQLRNHGEVTFHLSQVLSGHGFLREYLNKMRFTSSPA
FT                 CPRCPGVVEGVEHVMFECPRFAEVRSELLDGVLPETLEAHMLQSPTNWSNV
FT                 CEAAKRITSKLQRCWDDECAILAAQAMLEEPANRLDPEAVRCTRNDLRNVA
FT                 RRTQTVRQREEQCGERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDE
FT                 RRGVEGGDIERGESVYPELASSPNNRQGGLTSAEKAAAVEADVASR"
XX
SQ   Sequence 5540 BP; 1448 A; 1446 C; 1621 G; 1025 T; 0 other;
     gggtagggct tgagctgtca aaatagtgct gacgtccaaa agtgcgctcc gtgttaaact        60
     aggaaattat agttaaaaac accagtatag tcctaaaaag aaacattggt agatgtgtgc       120
     agtgatatag tatgtgcgca gcacgagtac cgagtggaaa gtggagtatt tttcattaaa       180
     aagataaaag tgcgagggcc caagtctgga acaacaatac aacaatatgg cgtaaaccgg       240
     gtgacattgg aaagacgtca cgcctaactg acaaaaaaaa aacaatccca aagggcaaaa       300
     ctacatttaa agggggagct actagtaaaa gtgtcagaca agagtcggat aacgctcgga       360
     taagaccaag aggcggacaa atagcaaggt gtgtaaattg aagtagcgtg atttcgacct       420
     tcgggacggc gttacgttcg aatgccagca acgcaacagt gccgaagctt ggcaccggtc       480
     ccgtggctgc aggacagcgg ctaagtagag gagctacgca gaagcaagca gcttcgccag       540
     tgcttacgga gatgagagag gcaatcaggc agctcactaa ctcgttggcc gaggcgaatg       600
     caagaaacga acgcatcaat gaggagctaa cacagatgcg catcctcatg actaaacagc       660
     aggagtatac ggagcgccgg gaattgattg cccgggaaga aatggagaag atgcgtgcag       720
     cacatgagcg cgaccgtact gcgctcaaca agttgcttat gcagggggcc ggtactagca       780
     gccatcgggc agcagcaaca ccaacaacac caacacctca gccacgccga atgcagcagc       840
     atcaggagaa acagcggcag ccgccacagc agcagcacca gcaaataggc ccatctacct       900
     cggctgcacc gcctcaactc ctagtgtcgg gagcatcgtt cgacccggag ggggacgatg       960
     gtcaaggcag tttcgctgag gtggtgaggc acaaatgggg gcggaatacc ggcaaaccgc      1020
     gcggctacca gcagcagcaa agccagtctc accgacaggt ggttatcggc acgcagcagg      1080
     agtgcctgca accggaacaa caacatcaac gccagcaaca gcatacggtg cgtcggcata      1140
     atgtcgataa ggtagaagtc atcccaggcg agaaccagac ctgggaaact gtttaccaaa      1200
     tggttaagga tgccattaag ttcgacccgg cgcataagga tctggcggat cacgtagtaa      1260
     tcggccgccg cactcatgct gcccgtcttc ggatacagct cagttgcacg gcagactcaa      1320
     cgctgatgct acaggaagtg caacaaatta ttggaaatgc tggtattgcg cgagtgataa      1380
     cagagatggg cgagattctc atcactcaca tcgatcctct cgcaagcgaa gaagatttaa      1440
     aggaggccgt agacagaaag ttgcaagcta gtgccggcgt tactaaggtc agcatgtggc      1500
     aactgtccga tggcacaaaa cgagcccgcg ttagactacc ggcaaaggca gccaaacaac      1560
     tcgtggggca aaagttgacg gtaagttgct gtataagcaa tatcaaggaa gccccggcca      1620
     tcaatctcca acagcagcgc tgttaccgct gcctggagcg tggccatatt gctcgcgaat      1680
     gtcgttctcc ggtcgaccga cagaaagcat gcattcggtg tggagcagaa ggccacttgg      1740
     ctaaagactg caacgccgag gtgaagtgcg ccgtgtgcag tggtcctcat cgcgtcggtc      1800
     acagtgattg tgtacgcccc atgctgcgat gtcctcacta agggtacttc aactcaatgt      1860
     ggatcattgt cgggaaggac agggcctagc actgcaatcc gcgcgggaac atcgtgctga      1920
     tgtcctgatc ttgtcggaca tgtttacgcc tcccaacaat aacgggcgat gggaattcga      1980
     cgcatcgagg aaagtagcta tagtagccac cggctcgtac ccaatacaac gggtatgggg      2040
     cagtacagtg ccgggactgg tggctgctaa agtggccggg atcgacttta tcagcgtcta      2100
     cgctcctccg agcctatctc cacaggaata cgagcggctt cttgaggccg ttgagctgga      2160
     ggcctcatcc cactcccacg tcgtgatcgc tggtgatttc aatgcttggc acacggaatg      2220
     gggtagcaga cgcaataacc tgcgtggcga ggaattactg cagatggtgg aggtgctggg      2280
     actctccatt ctcaataatg gcagcgcacc gacgttcatc ggcagaggag cagcaaggcc      2340
     cagtgtcatt gacgtgacct tcgcaactcc gtcgctagta ctgcatgaca cctgggaggt      2400
     actagatttc gccagatccg accaccagct gatccggttc gagaccaaca gccctgcact      2460
     ggccgcaagg agagttaagc tttcccagcg gaatcggtcg cagcaacggt ctccccgccg      2520
     tgatccacca atcaaccggc agcacactcc atgtgccggt aggaggtgga aaactaaaca      2580
     attcagggaa aattctttcc tcctagcact caaagacgtg aacttcgccg agcaagctgt      2640
     gactgatgcg gatatagtcg agatgatgac gagggcatgt gatgaagtga tgcaacgagc      2700
     caaccacttg tccagcaacc cttatcgtga cctttactcg tggtctcctg agctggagcg      2760
     gctacgtgga atatgtctag ccgcgcgcga gcggcttaga ctcatcaccg atctacaaga      2820
     gaggagtttt gttgcagcag accatcgcac ggcgaaacgc aacctggaga aggcgattcg      2880
     tgccagcaaa cgtcagcaga ttgacgcact gatcgataca gccgaggata atgagtttgg      2940
     tggcgggtac agggtggtga tgtccacgct gcgcggcagt cgagtgccgc aggagaaaga      3000
     cccaatcgag ctggggcgga tcgtgtctga cctgtttccc aaccacccgc cggtcccatg      3060
     gccgtatgta agtgatgtca cccagggaga ggcatccgtc gacgacgtga ctcccaggga      3120
     gctgcaggat atagcccacc agatggcaac aaggaaggca ccaggactag atggaattcc      3180
     caacgccgca gtgaaggccg cgatcgggat gtacccggat gttttttgca gaatgtacca      3240
     ggactgctta actcgtggca cgttcccgtc cgagtggaag cgccagcgcc tggtactgct      3300
     ttcgaagacg ggcaaaccac ccggggaaag cagctcatat cggccgctga gcatgctcga      3360
     cgcactcggc aaggtattgg agcaactaat cctgaaccgc ctcaacaagc atctcgagga      3420
     cccggattca ccgcggttgt ccgatgccca atacggtttc cgccgaggac gctccacctt      3480
     tagtgcgatc cagcgtgttg tagacgcagg gagaagggcc aagtcgttcc gtcgtaccaa      3540
     ccatcgcgac aagcgctgtc tgatggtggt cgcattggat atttgcaacg cgtttaacac      3600
     cgctagttgg cagtctatag ctgatgcgtt gcggaataag ggggtcccat cagcgcttct      3660
     aaatataata ggaagctact tcgaggaacg caagctgata tacaacacca gcgcgggccc      3720
     ggtcgagcgt cacatcagcg cgggagttcc acaggagtcc atcttgggcc cgaccctgtg      3780
     gaacgtgatg tacgacggag tccttggcgt tgagctacca cctggggcgg aacttatcgg      3840
     ctatgccgat gacctcgttt tgctggctcc aggcacaacg ccggcagcag cagcagtagt      3900
     agctgaggaa gctgtgtcag cggtagaccg gtggctgcgc gagcatcact tggagctcgc      3960
     acatgcgaaa acggagatga cggtgatctc tagcctgcag cagcctccgg aggacatcac      4020
     catcaccgta ggaggtacag aggtgccgtt ctcgcgtacc ctcaaatacc tcggggtacg      4080
     cttacactac aacctgtcgt gggttcctca tgtgaaggcg gttattcaga aggcaacgca      4140
     gatagtacag gcggtcacac aattgatgcc gaaccaccga ggaccaaaga cgtcacgatg      4200
     ccgcttgctt gcagcggtcg ccgactcgac aatgcgatac gctgcacccg tctggcacgg      4260
     agccttgact aaccgagagt gccgcagtct gctaaagcgc gtgcagcgaa aggcagcgat      4320
     ccgcgtggct cgaacgttcc ggacggtaag gtatgagacc gccgtgctgc ccgcgggact      4380
     ggtgccaatc tgcagagccg tagcggagga cacccgagtt cacagcagac gcgggaccgg      4440
     tgtaagtagc agcgagctcc ggaaagagga gcgacagcgg actattgaag agtggcagac      4500
     gacttgggac gcagacgccg cagcagacaa cgccagcaga tatgtcaggt gggcacacct      4560
     cgtaattccg gacgtgggag cctggcagtt gcggaatcac ggagaggtga cgtttcattt      4620
     gtctcaggtg ttgtcaggac acggattttt acgcgaatac ctgaacaaaa tgagattcac      4680
     ctcgtctccg gcctgccctc gttgccctgg tgtagtcgag ggagtagaac atgtaatgtt      4740
     cgaatgccct cgctttgctg aggtgaggag tgagctattg gatggagttt tgccagaaac      4800
     gttggaggcg cacatgcttc aatcacccac caactggagc aacgtgtgcg aggccgccaa      4860
     gcgcataacc tcaaaactcc aacgctgctg ggacgacgaa tgcgccattc tcgccgcaca      4920
     ggccatgctg gaggaacccg ccaatcggct cgatccagaa gcagtccggt gtacccggaa      4980
     tgaccttcga aatgtagcga gaaggacgca gacggtgcgt caaagggagg agcagtgtgg      5040
     cgaacggccg tctatgcctt catcgtcacc acgaacgtcg gagcgccggg cgaatatccg      5100
     cgctcggatg gcaagacttc ggcagcgaca tcgccagcat caacaggatg aacgacgagg      5160
     agttgaagga ggtgatatag agagagggga gtctgtctat cctgagctgg ccagctctcc      5220
     caacaaccgg caaggcggtt tgacctcggc agagaaggcg gcggcggtgg aggcggacgt      5280
     ggcctcccgc tagtcagcca aaaaatcaca cgaaagcacg cgaaggaatg ccaaaattgg      5340
     tgcgaaattg ccccacacaa gggcagagag tgcaaattac cagcgagacc aaggaggata      5400
     aaggatgcgc tcctaagagc tataacatcc cctcccccta gacccctcgc ggggcacagg      5460
     ggaaggggca ggaagagggt taggtaattt ttaaatatta taaatttact gaaataaact      5520
     aacccgattg ttaaaaaaaa                                                  5540
//
ID   nPIF-1_Hmel repbase;    DNA;    INV; 160 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-160
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 160 BP; 59 A; 25 C; 37 G; 39 T; 0 other;
     cgcccaatgt taataatcaa tcctaatcca taaattgcaa ccatagattg aaatagacag        60
     agatggagga cggcatgcag gttagtgatt ggatagacat gtcgaacaat acaagattga       120
     cgttaactgg agataggaga tacattatta acattgggcg                             160
//
ID   nPIF-2_Hmel repbase;    DNA;    INV; 202 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-202
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 202 BP; 67 A; 36 C; 37 G; 62 T; 0 other;
     cgcccgatgt taataatcaa tcctaatcca taaattgcaa ccatagattg aaatatcaat        60
     ccattttttg agtttagctt gccaataacc tatcgaagta cttcattttc attggcatgc       120
     aggttagaga ttggatagat atgtcgaaca atccaagatt gacgttaact ggagatagga       180
     gatacattat taacatcggg cg                                                202
//
ID   nPIF-3_Hmel repbase;    DNA;    INV; 2315 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2315
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2315 BP; 823 A; 286 C; 334 G; 859 T; 13 other;
     cgcccaatgt taataatcga tcctaatcca taaattgcta ccatagatta aaatatcaat        60
     ctattttttg agtttagctt gccaataacc tatcgaagta cttcattttc aatctttaac       120
     ttcaatctat cgttgggagg actaactgga gatgaagagg gaactttgta tgaaaattac       180
     agcttgtgcg tgccaataaa cgatctgtcc attttgacat tacgttggat agcaaaaatg       240
     acagctaatt gcgatccgac atattttggg gtttacttta tcatatcccc ggattgcaaa       300
     attgcattta tattatattt gatttttaaa gtaaataaat atgtggagtg acatttcttc       360
     gagtgatagt aatgatagtg ttatgtagtc agtgtcagca attacaaata tatgcagtga       420
     gcatataaaa atatatcaag agagtgctaa aaacttctat caagttggtg cctttcctgg       480
     agttattgct gcaattgatt gcactcgaac acttatgtgt ttaatcgcca tgtgagtatt       540
     attaagttat ataaagtttt ctttacaaaa gcaggcaaat tatggaaact tttttttgta       600
     tacttaatct cagttactaa ttaccatttc atttcttaat ttgagctctg ggcttattaa       660
     tttcagttgc tgattttcaa aattactatc tcatatattt gtaaaataat attttatatt       720
     ttattatagg cagcaaaatg tgatgcaaga cattatggta atcaatggaa gtaaagtacc       780
     aaatagacca tatttattaa cacaagttct taatccaagt actaaagcaa agctgcaagc       840
     aagcatatat taaaccagga acataataga aaggtattat gttaacctaa tattacctat       900
     grtatggaaa aaagrggacg gaccatataa aaaaaaatct tattataatt tattagtatg       960
     atgtgtaaaw agtattaaac ttattaatat tcaygaatta tatacctaat atasaaattt      1020
     tatattttta gaacatttgc aagayaattt catattatgr cactccattt gcagagatct      1080
     taatttggag gaagtaccag gaatggaaat accttcatga catgatagat aatgaggaca      1140
     gcgctgcaat ataagatatc acagaaagga cgtaaataat tgttttataa gatgaataat      1200
     tattcaaata ttttatattt attaattact taagtgagaa gattgttagt taatcatagt      1260
     tttacttgtt tttgggggtg aataaggaaa acaatgtgta ttgtaatttt tttattatta      1320
     aaaaadtkam cywwtttttt atttgtctct ttatattaaa tattttttat ttcttaattc      1380
     tagcttgctc catgtttagt aattttatca gctttattct ccatacattt cttataagct      1440
     acaaaatatt tagtgaattt cttgcaatca ctgttttgtt tttactgaaa aaaataaagt      1500
     atttattagt tcattgttca ataaagcatt catcaatata agttaaaata ataatcttgc      1560
     acttaatctc aaattttatt ctttgttatc caatgtagca ataaacaata tgaaattgaa      1620
     atagccaagc aaaacgatat taatattata atgaattcaa aaattctata gaggctaacg      1680
     cctttatata atttttcgca tgtatattta aacttaataa acaaaattat gaatacatac      1740
     gatacttacc ttactatgcc ggactccatt aatgaaatta aaataattat ctttagttca      1800
     gtttagttgt aattttatgg cgtttcaagt tatgtttaat aatttataca tgaaaatggg      1860
     ttaggaataa agtatcttaa aactaacaat taattattat attataaaaa catatgctgt      1920
     caaaatgaca tgttcaagtt ccattgtacg cacctaagca tattgcatta agttttaaaa      1980
     agtgttttaa tattattaat ttttattctt ttttaatatt ttgggactta aagatttatt      2040
     attttattaa aaatagtttt tataggactt ttataagtaa taataattaa ttttaaattt      2100
     aatttagcat atatattagg attttgttaa ttaaaaaaag atacgtaaaa cgaaactatc      2160
     gttaccgcag ggagggccct gcaatccact tttgatgata agttgacatt atccggaatg      2220
     gttattggca tgcaggttag agattggata gatatgtcga acattccaag atggacgtta      2280
     actggagatc ggagatacat tattaatttc gggcg                                 2315
//
ID   nPIF-4_Hmel repbase;    DNA;    INV; 578 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-578
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 578 BP; 191 A; 78 C; 130 G; 179 T; 0 other;
     aggggttgtc cattaatcac gtgaggcttg aaaggggggg gaggggtttg ataaaaatca        60
     cgaaaataac acaaggggga ggggggggtg tagtaagata tctcgtgtat ttattttttc       120
     gtctaacgcg cgatttttaa acaaatatta agcacagtgc caacaactga cctgcaagat       180
     gcttatccag ttgttagtgt tgaagaatgt cttgctaatc cgtggtccga ggacaatata       240
     cattaaatat atttatgtac tagtacaata catgtttttc ctatgattaa actcttcgtt       300
     tattattatt gttatggcaa taaaaaaaaa cttgcaacct ggtgtagaca tttttattat       360
     ggtccttaat ttcagaataa aataagatta tagtttatac ctgtatttaa attaagataa       420
     tattcagaaa attttaagat tcgttgtagg tactaaaaat acacgtgatg ttgagaaggg       480
     ggaggggtgg tggtcttaaa cctcactacg tatcaccaat gggggagggg gggttaaaaa       540
     atgctaaaaa aagatcacgt gattaatgga caacccct                               578
//
ID   nPIF-5_Hmel repbase;    DNA;    INV; 730 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-730
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 730 BP; 256 A; 86 C; 108 G; 270 T; 10 other;
     taatagcttt atagaattaa tgatwattaa ataataaata atacatatat gattgttatc        60
     ataaataatg ttttgtaatt gacatttgac acttgtcatt gatttggcgt ttaaaatatc       120
     cgtctatgat ttggtagtta agtaatggat tactatagaa ttatgattat atttaataga       180
     ttwataaagt taatggtaat taaataataa ataatacata tatgataatt acaataaata       240
     atattttata attgataatt gacacttgtc taggatttgt agtttgatac atctgcctat       300
     gatttgctgg ctggtgatag aaaacaatgg aattacgata atatttgact tatagyatta       360
     ttgtaaatgt attatatatc ctcggctatc ttaattataa atgttaatag atttatcatt       420
     aatataatca aatattactg tgattgcaaa tgtggtaagt atagtacagg taagttatat       480
     gtaattatac tgggctggag cagtgaaagg cgagtgttgt tataacgtaa agggtaccct       540
     gaagcctaca cctgtggtca caagtccaag gcactgctcc aagcttcaca tcatttaaag       600
     agcagaataa cdttaagtta taactaccat ccacttctga tgtttgntcg atacgacaat       660
     cctntwattc atthagacaa ttattctaat ttatctttat ttatwdtatc tactatcatg       720
     attctaacac                                                              730
//
ID   nPIF-6_Hmel repbase;    DNA;    INV; 620 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous PIF element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PIF;
KW   nPIF-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-620
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 620 BP; 176 A; 131 C; 136 G; 172 T; 5 other;
     ggcttagcgc gcactggtga cttttgtcac ggtgacaata aattttttgt cactgacatg        60
     tcaccatact tttcgcsact gcgcgcactt gcgatgacag tgacgaaatt ttttacattt       120
     gataaaatgg atctcgaaga gatggttgtc tgtgcactta tattaagaaa tagaaaaaaa       180
     agcaaaygta gaaaatattg gctttcaact tttcatttgt catagagcaa tggcctcaac       240
     tcaatttcgt caatcagtat tgtcattgtc tatttyatct tcatgaaaac acacgttttg       300
     ccttggtgat gaacttgacg ccattcttga aataaaaatt cggtgctgca atgcaacacg       360
     ctgctgtttc atgtttatgc ggaagacgac tagtatggaa accgcaaggg ggaggtgaca       420
     tttagttgct aatgcgcgca cgggcataca aatctatgga cgcggtgaca gttgcgtcac       480
     cggcgtgttg ccgkcctccg cggacaaaaa gtcacccaat tgtcacgtat ccaaatgcgc       540
     gcaccttcat taagtgtaat gtacacggtg acagtsacgc aacagtcacg gtgacaaaaa       600
     tcactagtgc gcgctatacc                                                   620
//
ID   npiggyBac-1_Hmel repbase;    DNA;    INV; 1170 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1170
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1170 BP; 387 A; 179 C; 174 G; 426 T; 4 other;
     cctttaagta tggacgtcgg gtctgacaga ccagacagtt ctacgaattc tacaaatcgg        60
     ccacttctcg gtgacctccg ccactgagtc tctcagtacc tttcgtatta atgacaaaat       120
     gaatgtagat agcagtggtt gtgtctctgg gttcaaaaca cgtgagtatt taactttcta       180
     aacggggcct gggtctgtca gacccgacgt ccatgtttcc catacatgaa tgatttcaaa       240
     acgccatata tttttataat attacaaaat atactttaat attttaattg tattatttgt       300
     attcaaatgt ttttattgtt wtatatcata tattattttg cattgtttgt tatatatttt       360
     agtaatataa atattattta cctaaaaaag attcaatttt tttagttttt atgataaaat       420
     ggaaaaaaat gatcgaccta gcacgtcagg gacaaaaata tcggtacttt ataatcaaca       480
     tcaaacaaaa gaattggacg acgacatttt ataaagaaaa tagcacttta tcaaataaaa       540
     agacgcgttt cgtatactaa actactctaa gaattgagaa tgactttgac tcgcgtttcg       600
     cgatctgatc tatcatttat tgaacatgaa gctaaaaaaa tagttttggg ttcttgaaaa       660
     acatgtayac tttgccccca aaagatatat agaaasacaa cacatactta tgttgactgc       720
     aatcgtcctg ttwgcctaca atgttgaaag ccattgtgta tcgatgttca ataatacctt       780
     atcttgaggt gttgtcaaaa tttttatttt ataacataag atgtaatttc tttatttttt       840
     ttatttgtta gactttatat tttgttaaaa aaatatttat tttattatct gtcttttttt       900
     tatagtatta ttttcttaag agtcatccca tgtggccaaa gactgaaatt gtgactttaa       960
     gttacttaaa tcgttgtgat gcgtaaactt taataaaaag cgattttatt tatattgatt      1020
     ttgtttgatt tgaggctatt catgtaaact aaaacataaa attgtcttct tcctttaaaa      1080
     aacagccgga atatgaccaa taaatacact ggtctgacag acccgacgtc catatgtatg      1140
     ttataaaaaa atcacgtcca tagttaaagg                                       1170
//
ID   npiggyBac-2_Hmel repbase;    DNA;    INV; 1871 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1871
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1871 BP; 624 A; 285 C; 291 G; 667 T; 4 other;
     cccttatctt cattttgyat agtatactat acatacaact ttataaaaat atacgatcgc        60
     tataaaataw wttttaactt agttttatta aacatatgac atttctagac atttatttat       120
     acttcaaaaa taaaaatagt agtttatcta tgatagtttt aaaaaaattg tcaaaaataa       180
     cagtcaagac gcgctgctca gatttctcta aggtaagttt aattttattt ttatgtttgt       240
     actcctaaat atgtatgttt attataaaat acacatgcct aaatgtctgt tcttacacat       300
     ttttatatat atgctgatgt cgctatatga attagtatgt ttttttcgtg ttttttaata       360
     acgtatatta tactatacat tgccgcagtt gcagtcgttt acctttcgty ggtggtgtat       420
     agtataatat acattgccaa cttcacagga tcaatatttt ttggaacttt actataaaat       480
     gtaaatttca agtatgtctt tcttatatac taaaccaatt ttattataat gtaaaagaca       540
     gttgtactgc cgccttgata tagtggttct agaaagctta cacacaaagt tatgggttcg       600
     attcccataa aaaatactat tattattatt actgcatgac tacctaacta tataaaggga       660
     caaataatat tacattcatt atttacctat ttataacaca atatggtttg gcttatcttt       720
     ggtgttggtt ttttgcatgt gtcttttgct ttggttttaa actctatggg tgatagagct       780
     aggcgcattt tctccttagt gcctgaagag aatgcagact ctgacacaag tgacggagct       840
     agtaacagta atgaagctgg aatgattgga tcaacagaaa gttctccaga gccatcgata       900
     aattcaaatc tcgaaaggtt aaacctccta caaatttctg attatgagat aggaacgcat       960
     gcagctgata tttatgccga taccaccgaa ttgcctgtta cacctcattt attaattcat      1020
     tacaagaaag aatgaagaaa gaagaaaatc gacgtcaata taaaccaaat aagccttgta      1080
     aatggagttt caagaactaa atcagagccg gtgtgtgaca tcatgtatga cttcttgctc      1140
     tacataagag atgacacttt tacgggcatt attactgaag aagaagaaga gactatgggt      1200
     gttggaagta aaatagtttt agctttatat acgactatta agtcgaaaca tttcagtgaa      1260
     aaatttacac gatttcccgc caagcaaaaa tacaaaaccg gtatcttaac gatcatgcga      1320
     tgatattggc tatgacaaat attaccattg gccgcaaata accggatatc aaatgtgcaa      1380
     gtactgcaaa gctgtactgc tggccaggca cgtaccatgt gcataaaatg taaggttcac      1440
     ctttgttttg tgaagaatcg aaggtgtttt ttggagtacc accgcaagca ataggatctc      1500
     tgaattatta ttttgtaaca aaaaattgtt tgagaatgat ttttttaatt aaacattttt      1560
     acttccatta atatagttgt ttttatttaa aatcatatta tttacaataa tctttcagta      1620
     tattttaaaa gctaccagta acatttccac cctccctaag catcgcaatg tatagtataa      1680
     tatacattct taaaaatggt agaatcactg tacgtgtagc aatgtatagt atagtataca      1740
     tcgtgttttt ccgaaatttt catattatga ttttttaatt tatttttttt atgttttttg      1800
     tagcccaaag aagctaccag tatgcatatt ttttgctttt cttaaaaaaa aaatttttgc      1860
     gaagataagg g                                                           1871
//
ID   npiggyBac-3_Hmel repbase;    DNA;    INV; 1417 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1417
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1417 BP; 455 A; 235 C; 260 G; 466 T; 1 other;
     cccatataga cccgccgtgc ccaaatgggt acacctacaa tagtaccctt gtttttttwa        60
     tatttttatt tttatgcagt ttatgtctag aattgtaaag ataagtagta tatccttatg       120
     ttgtagccgt aaaatccaat taaaaatttt ttacaatcgt tcatttcgtg ccttttgtaa       180
     agctgtttca cgaaatctgt gaaggcaaaa tgtaagtata tttattttta aatttttctt       240
     ctaaatacat ttgttttggt acaaaacata cttaagtact tagtattcta tgtaatataa       300
     ttacatttga ttagaaaaga agagtcgtaa taggacaaat tcaactttta cgatgctgtc       360
     cccaattggg gccaatgggc acatcagagg tcaattttta tgtttttata tgcatgtcca       420
     tccaaagttc ataatgactc ttaggatatt tagcggtcgc aatgaatata agggtcttca       480
     agaagcaatc gcagttgtaa ttattgaaga aaaagacttc ggagaggtat atttagttgc       540
     gctgcctcta aaaccaggtg tggtaatcga cgaagaagaa gatgtagata tacaaagcac       600
     tgctaatctg cctgcttact aatagaagca tttatcaacc ttttgctaag agacgtagag       660
     gaaccgtaat cttgagcaac cccgttggtg taaaagtgat ccaactacga ctaatataca       720
     aggtcgtctt gagaaattta agaattgtta aaagatgaaa ctcagcagta aaggatatga       780
     aaagaaaaac cgagccgatt ttgattactg cttttaccaa gttaactaaa ttttattagt       840
     gcgaaggttt tacagtgtgg tatgggaggg gttgatcagg ctgatcaatc tttttaccta       900
     tatagcaatg ctgtacgtgg caaaaaatgg tggtgggttt tatccacaca tacataggat       960
     cttgctgttg caaattcgcg gcacctgcac ttgctaacta atataaacag gatagattag      1020
     cttgattttt tcgttacatc gctcgtcacg atttaagaga cgaaaacatc aacgtattta      1080
     tgcgaccagc agcttctgca gtaccaagtc tgcagcacca cggggtagac cactactccc      1140
     aaaaattttg ctagcaactg agacgtgcaa tgtgccataa aaaaacgcgt tgatagtgta      1200
     aaaagtgtta taaaacattt cgtgtcgcaa aaatagtttc gaaaatttag atactacatg      1260
     tgcccattgg ccccatttaa ggacggcatt tttttatatt taaataaaaa aaaattattt      1320
     ttttttttac gttttttatt ttcttacatc gatatctatc aattattacc taaaaaacct      1380
     tttatttact gctagtttgg ctatgggtct aaatggg                               1417
//
ID   npiggyBac-4_Hmel repbase;    DNA;    INV; 920 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-920
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 920 BP; 311 A; 180 C; 166 G; 260 T; 3 other;
     cccttaactg ctcgcacgaa gaaaatcrct taactgctcg cacggggtcc gtggtgaccc        60
     caatttgtat ggataaaatt tgatgattcc ttttttttaa tgaaacaagc gaatagtaat       120
     tatgaaagta ctttatttaa tctataagac ataaaaacca caacttaaaa taaaatcttc       180
     taaggcataa aaataactaa aatataaact tctacaataa ggaacatttt tggcacaaca       240
     tgagatcatg cattaaaatt tcatgaatat ttaggaacta tggcaatcat cgttattgca       300
     gttttggcag taaacaatga agtgctcatt acacaaaaac tttttgcctt aactgcattt       360
     tgtggatact tttcrgtcac tctttttcat gcaccgcacc gcccacgccc acgcccagca       420
     ccgcccacgt ttagtggtag gtggagcagg tggagtttcc aaaccatgta cttccaatag       480
     ccgcgtggtt cgacgttttt gatgactttc aacaagttcc gttgcaagtt gtcgcaagaa       540
     tgtttgataa ctgaggataa aaaaagacct atgtaaataa catatttgta cgaaaaatac       600
     aaaaaaaaaa ttctaaacca gtaaaacgat agaaattatc attcactata atatttcatt       660
     caaagttata tcaatatcta attaaaaaca atagaatata aaaagcttac ctttctcaaa       720
     aaagttacgt aagtactcgc acggggtcac ggctcaagag agcagaggct tagccttcac       780
     ctgcagcggc ctaaacggta ctaaagtatg ttctttagca catattaaga ggctagcggg       840
     cgygcgggga ggttccaacc gttgcaagtg cattttttcg atatgcgaaa gtgctttgac       900
     cccatgcgag cagttaaggg                                                   920
//
ID   npiggyBac-5_Hmel repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-262
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 262 BP; 90 A; 46 C; 33 G; 93 T; 0 other;
     cccttaaatg cataaagtag taaaactgca acataccatt caaacgacca taaaattatt        60
     agtatgagtt caatgcatgc tgttgcagga ttattactat catggtgata tatttaatcg       120
     agtggcaaca cacttttttt cttcacgact gtcaaaacta ttttttttat tatttttccc       180
     taaatcagca tattcatggc tccaaaatat attttttctc ggtctaaaaa taaaatcatg       240
     cataaaatca tgcatttaag gg                                                262
//
ID   npiggyBac-6_Hmel repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1280
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1280 BP; 418 A; 185 C; 236 G; 439 T; 2 other;
     cactagaagc gccgccgtcc catttttgac ccaaacgcaa ggttgattgt atataacttt        60
     tttatttgtt aatttatgta gatgaaattt ttttactatt accaatttta cacctttatt       120
     taattaaaaa tataaataat tttatagcag tcatactttt tgaaaaaaaa atdagattta       180
     cctagaactg ccgctgggtc atttttgtcc cgccattatt attttattat ttgagggtat       240
     aatttgacat attttcatgc ctcggggacg aggtggaggg gaaagggcva tgcgggggcg       300
     gaaaaaaatt gaatagtagg tttagcagtc aatgcctaag tttttagggt tctgtagctt       360
     ttaaggaaaa aaaaaccctt ataagatcat ttttttgtcc atccgtctgt ctgtgccttt       420
     atctcaggaa tgcttggaga aatcgagttg atattcatat gagtatatga atatcaacta       480
     tatgacgatc tacagtccct tgatttcctg aaaaagcgcc cttaaaaaaa gatatgacca       540
     tttatatagt aaaaaacgtg tatttcgaca ctataaaggg aatcaaatta ataaggtact       600
     ttcagttaac ttagaattat gaaatttggc agctagcatc tacatgtagt actagtacag       660
     gaaaaaatct gaaaactata catttatgta taaatcttaa aaaataatag cctgaaaagt       720
     ggggtaaaat tggtgtcaat actaaatttt gccgctagtc caagtgaggt atcagatgaa       780
     aggatgacta agctaggctt gaatttcaga aaaacacttg ataccaaatg tgggcaattg       840
     tagggtaggt agagggaacc tgggaaccta gtgctatgca ctccgctggc attttccgcc       900
     gaattctgga ggcattacca cgcaatgtta taaatcatct gtgatgtatc actgatgaag       960
     aatatattaa tgcattactt ggcctaataa taatattaac taatttcaat aacttataat      1020
     tttgtaagag ttattcagtt agttgtcacg accttagaac gtatttgaaa tatttgattc      1080
     tttctttgtg ttttattttt tggtactttt atgtttgtta aagaataaga attgattatt      1140
     aaagatggtc tacatatttt acgaattatt ttaataatat tttttttgta ttataccaac      1200
     aatcaacata ataagtagaa tgggacaaat ttgtcacgac ggcggttcaa ggggggtctc      1260
     aatcttcggc acttctagtg                                                  1280
//
ID   npiggyBac-7_Hmel repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-468
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 468 BP; 157 A; 88 C; 103 G; 120 T; 0 other;
     cacgttgagc gccacgcgta tttctacagc aatcccgttc aggccacgcg cgccgctttg        60
     aagcgctggt actgcaggag cagaattgca agaagatccg gaaaaaaaca caaactcgaa       120
     agaaaatcgg gaaaagtctc tgaagttcga aagtactgta aattatgtta tgacaaaaat       180
     gtaagaaaag atggtagagt gatggcaaga agaaagacca agcgtgttgt aacattttgt       240
     gatacttgtg aaggaaaacc atttttatgt ttgacatgtt acaatgaatc ccattaatcc       300
     tgtaatgata ccaaattaag taaattttaa ataaattttc tgtaattccg taaaatagtg       360
     taaaatttta tagttctcat gttacacgct gtcagccacc gatggctgac gcggcctaaa       420
     cggaaagtct agtgtcagcc accgatggct gacatggcgc tcaacgtg                    468
//
ID   npiggyBac-8_Hmel repbase;    DNA;    INV; 1323 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   npiggyBac-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1323
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1323 BP; 402 A; 238 C; 230 G; 453 T; 0 other;
     ccctagatag ataaccatat tgcactttac actaaagata accatacgtc gattcaacgt        60
     gcgaatgttt gagtgagcat attttggatt atgtatatcc taggtttatg aatatgatat       120
     tatatcttaa tgtatgtaat tgtgttgtga ataaataaaa aacattagag tttatttata       180
     tttttattag aaaaaataaa aaaagaacaa aaggaggtac tttttacttt ataaaactta       240
     aacatttagg aatctctccg tcagttttat aatttgagat ataaactttt taaaatcatt       300
     tttttataaa ctatataata ttaaaaacct aaataaatat atttttttat taattttcgt       360
     ctcaaagaca cttaggacag gcgctggact tgtgctctcc acaaatggga tttttacagt       420
     tgccgcacat agtctttgtc atccttctaa tttttgatgg acaaaaggca caatattttc       480
     ttttctttag ctcagttaca ccttcgagtt ctgtgggagg tggcttttac atcagggttt       540
     tcaatcttca gctggatttc tgcgttggtc cattttgtta tctcctccac aatgtcatca       600
     ataataaatg tactgaaaca ttctaaaggc tcataagggc atttattcgt ccgagtggga       660
     ccctttgatg tccgtataat attagcagat gatattcttc cacttgttct gcctttagtg       720
     gctgtccaac gatgatcgtt ttgcctcgaa gagtttgacg ctgtggcatg acaatcggca       780
     tacttgccga agcactttca ggagtttcag ggttattttc agacacatct tcagtatgca       840
     atgtgtttac tactggtgga ccactcacct catagtctac agcatcactc tgtacttcat       900
     cttttaataa attgtcttca gtttcactgt ccgacccctg aatctctgca tcgctcgttt       960
     catgcaacaa ccgactgatt tttgcatcgt ttatacgatt atgtgacgac atgatgtttt      1020
     ttttgtcgtg agctgtaaca agtaaaaaaa ataagtacat ttattctgaa aaaagtcgca      1080
     ataacacatt ttcctaaaaa tctaaaaact aacactaaag ataaccatac gtcatttcga      1140
     cgtaaggtag gtaaatattg acgaaagtat tgcacttacc ggagggatac gggtgtgtcc      1200
     tgcaagctcc gacggccaaa tgagttgaca ggaacggcca gtttagtgac gcgaaaaaca      1260
     aacgagttat atcaattttt caaaatcgat tacgtcgatt cgacgtaggt tatctatcta      1320
     ggg                                                                    1323
//
ID   nTc3-1_Hmel repbase;    DNA;    INV; 385 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous Tc3 element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; Tc3;
KW   nTc3-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-385
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 385 BP; 150 A; 70 C; 59 G; 106 T; 0 other;
     cagggtggaa ttgtcagcac cactttaaat gaaaccacag ttttaactac tctataaaag        60
     cctaatataa ttcggaaaaa aaataattcc caaaaatgaa aaagttattt tttcaaacaa       120
     aataaataat aaaattatcg ttttaaaata aaacgccatt tgtaaagtat aacataggca       180
     cgcacacact tacctgtcaa atcggaaacg tcgcacacgt atgtgtgcgt cacacgaaat       240
     acaggtatgg ataaaaatcg tgaaatgaaa aaaaaatcct acgtccaaac tgttgaggta       300
     ccttgattaa tttcttaggt gtgggtttga aatatattac cctatatgca gtttcaataa       360
     aagaagcgct gcctcttcca ccctg                                             385
//
ID   nTc3-2_Hmel repbase;    DNA;    INV; 2203 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous Tc3 element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; nTc3-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2203
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2203 BP; 819 A; 331 C; 331 G; 720 T; 2 other;
     cagggtggaa gaggctgcgc ttctttaatt gaaactgcat atagggtaaa aaatttcaaa        60
     cncgaagcta aagaaattaa tcaagatgcc tcaacagttt ggacgtagga tttttttttc       120
     atttcacgat ttttctccat acctgtattt cgtgtgacgc acacatacac atactactac       180
     aaaaatacta ctaagcgttg ccaaacttct acttttcatt cgtcaaaaac aaaaccgaac       240
     gagaaagaac gatatctcgc gttctttttc acgcaattac ctatttatta taaatctaaa       300
     taacgttcaa acctcttatt aaaattgttt aacaaaatcc tactttaagt caatttatta       360
     tatcaccttt attatgaaat tatttagaaa tactgcatgg ttattgaacc acccacaaag       420
     ttatattcaa aatttttaac acacaaaatg atattgaact acgatagata ggtacttaca       480
     tttaacatta gttttacatc gtcgttgtcg cattctcctt ttactatcac taatatttac       540
     atcataagta atattaaaaa ctcaacattt gtttgaaatg tcttaaaaaa atgtatgttt       600
     tgatagtaca ctcaaatact gacacaatag tttcacattt gagaaaaata ctcagtaatc       660
     acatcatcac gatcacgaaa cattcatcac gattttagaa atccgattaa tgataaaatt       720
     aatattaaac aacatccaaa taatttaaaa cacttaataa ttattcaacg tataaagtcg       780
     aacaaaataa tgtaaataca acagaactta gccgttccgc ggctaagttc tgttctcaca       840
     cagataatta aaaacattgt aatagttgcc attaactaaa atacttatcg aatatactat       900
     taaatttttt attaagattt tcattattat ttatatttgt atgattattt tgatagaaaa       960
     tcgtataaaa attaaatatt aaacgagttt tataatgtta cacgaggacc tgcgaaaact      1020
     caatacgaaa taaattaata tttagtaatt atttgtaaat agtattgata attttattaa      1080
     ttattttaat atcaaatcat gcgtaaaaag tataatctac atttattatg aattatagtg      1140
     ttatattgca caatcaatca atattaaaaa tgaattttgt tatctgtaca aagacacccc      1200
     gctcacgccg caccgattac cggggattcc catagaatcg gtgcggcgcg tacattctgc      1260
     gcaatagtag ttgggtcgga ctatagctga atgctattta ctaaaccata taaatacaac      1320
     gggttatggg cccagaccac gtcgtaacaa taataaagaa gattgcatca atcgtagaaa      1380
     attagaaata ctggcgagat taaaacagcg ttacttcacg cgacgcttcg gcgttggtat      1440
     tgaaatttgg aggttaagtt gccgggaagg aataaaaaag aaaaacaagc aaaataaaca      1500
     atcacaatgn aaaggaaaca gcacagtaat aaaactggaa ggagtaaaaa attggaatgc      1560
     ttggaagttc caaaccataa tactactacg gggggaaatt gtgtcatcat catctgcatt      1620
     tattgtaaaa agaaatgcta caattaaaag aaatattaaa tgtttcaagt gtaataatat      1680
     gggtcattat cgagctgaat gtaatgtgga cagaaaatgt aatatttatt gttaaaaaaa      1740
     gtgaaaaaaa aatgctatta ttgtaataat tttgtaaaca tgttaaaaat gagtgttagt      1800
     ttaaaacggg aacataaaaa atgtgtttgt agtgcaacaa aagtaaaatt aaaaacctaa      1860
     tagaaataat tcaataaaag tgtgtgtaaa gtgtattcct aagtgttgcg ttaatttaac      1920
     atcagctcgc cgccgttgcc tacataccta cgctagttgc tgcgactcga tttcttgaat      1980
     gaagcgtgtg cgacgttgcc gctttgacag gtaagtgtgt gagtgataat ataacacttt      2040
     acaaatggcg ttttttttta aaacgattat tttattattt attttgtttg aaaaaataac      2100
     tttttcattt ttgggaatta ttttttttct gaattatatt aggcttttat agagtagtta      2160
     aaactgtggt ttcatttaaa gtggtgccgt caattccacc ctg                        2203
//
ID   nTc3-3_Hmel repbase;    DNA;    INV; 1470 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous Tc3 element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; Tc3;
KW   nTc3-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1470
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1470 BP; 464 A; 279 C; 270 G; 455 T; 2 other;
     cagggtgtcc caggagtcaa cgataaaacg aaaccaggtg atagaccaag tcgtgacagt        60
     tatgagaaaa atataaaaaa aaatctttgt catgtatttt tcatattata ttgattttaa       120
     aaaatatcgc aaaaaccgac accctgtgat ggtttttcaa gtcccaggac tacaaatatt       180
     actctttctt catttttttt tctgtaatgt aatcatgagt aacccttctg tgaattacag       240
     tttaagattt aaacatacct gcatcagttt tcaataaaat gtggtgtttt tgccaaacat       300
     taaattcaaa atatttacta cacccaactt taaccgactg tactataaaa aaaatgtact       360
     acactgtttt tgcaagtaac tttaaaagtt ggcgcattta atctggattc cgaaatggta       420
     cgacacttgc tggattactt ctttgttgaa gagagaaaaa tcgaaataca cgataatcgg       480
     gatgacgttc agctttttgg tatcttttcc gatacattct agctgcagca tttgcgttac       540
     ataaccattc tccatgaatg aaatgcatat tggcaatgtg tcaaagaccg agtatatggc       600
     ctgcgagabc ccggactcga gcactgtcct tataagtcct gggtcatccc ctaagttgga       660
     aaagttcagg taccttggat ccgtcatgca cgagtctgga ggcatcgatc acgatctcta       720
     taagacggat aagagtttgg acggtatcct gcgatcacag accacaccag tgacctccct       780
     aaactaaaca cttagcccag gcaacgctta tccgacttag gggctggccc aggacttata       840
     agracagtgc tcgagtccgg gctctcgcag gccatatact cggtctttga cacattgcca       900
     atatgcattt cattcatgga gaatggttat gtaacgcaaa tgctgcagct agaatgtatc       960
     ggaaaagata ccaaaaagct gaacgtcatc ccgattatcg tgtatttcga tttttctctc      1020
     ttcaacaaag aagtaatcca gcaagtgtcg taccatttcg gaatccagat taaatgcgcc      1080
     aacttttaaa gttacttgca aaaacagtgt agtacatttt ttttatagta cagtcggtta      1140
     aagttgggtg tagtaaatat tttgaattta atgtttggca aaaacaccac attttattga      1200
     aaactgatgc aggtatgttt aaatcttaaa ctgtaattca cagaagggtt actcatgatt      1260
     acattacaga aaaaaaaatg aagaaagagt aatatttgta gtcctgggac ttgaaaaacc      1320
     atcacagggt gtcggttttt gcgatatttt ttaaaatcaa tataatatga aaaatacatg      1380
     acaaagattt ttttttatat ttttctcata actgtcacga cttggtctat cacctggttt      1440
     cgttttatcg ttgactcctg ggacaccctg                                       1470
//
ID   nTc3-4_Hmel repbase;    DNA;    INV; 1024 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-autonomous Tc3 element from Heliconius melpomene.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; Tc3;
KW   nTc3-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1024
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1024 BP; 351 A; 165 C; 180 G; 326 T; 2 other;
     cagggcttgt taacgttacc aattcacatt taaattaacg ttaattaccg gtaatthcat        60
     atagatacct aagtatcgtt acaatttggt agcgatactt ggtaacttaa cggaataata       120
     acgttataat aaggttaatt ttgcgttaaa tcttaacgtt aaatttagtg ttacttcgaa       180
     agtagcgata aaagtagcgg tataaatcat ccttttattt tgttaccttt atgcgacgtt       240
     gccgttaaat tttatttcgc tacaattgct cattttgtta aaaacaaaga tggggcgtac       300
     gtattatggg ctatactata ataagacaaa aaagtgtaat tctacaataa atattttttc       360
     ataaaagtaa tttacgttaa tattgaaaat agtaagcgaa ttatagttta atgcggcggc       420
     ttaactaaaa tagaaaatta gtttcatggc gcagcggcac aagggtgtga ctgtaacgcg       480
     acggttgtgg gttcgatccc attgaaatat ttatttatgt ttatatttcc atttcttcgc       540
     tctggtgtcg aggcaaagcg cggcgttgag ttttgccact caatacgcaa tccctccaga       600
     attcgccaga aagtggggaa cggagtgtct taacactagg ttccctctgc ctaccctgct       660
     gtgtgcggsa tacaacgtga agctaaaaga aaaagaaaca aagaaagttt cacaaaatat       720
     tttttataat gataataatt ttattaaaat tacccattta agttttaaaa aattaaatgc       780
     ttaacgattg taaaaccaac gatgtaccta tattcacaaa aacaatcaaa actcggaatt       840
     agacgagagc gacggtaaca aaactagctt ataacgatac cattttaacg atacttaatg       900
     ataccgtgga tttcaagtta acggtaaaat tatctaaata taaaggtaaa tatggtagcg       960
     cttcttttca agtatcgata cccggagtaa cgataccaac tttttaacgg tatttcaagc      1020
     cctg                                                                   1024
//
ID   NTS_DM      repbase;    DNA;    INV; 240 BP.
XX
AC   J01124;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   D. melanogaster rRNA nontranscribed spacer.
XX
KW   Satellite; Simple Repeat; Repetitive sequence; NTS_DM.
XX
NM   NTS_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-240
RA   Kohorn D.B. and Rae M.P.;
RT   "nontranscribed spacer sequences promote in vitro transcription
RT   of drosophila ribosomal dna.";
RL   Nucleic Acids Res 10(21), 6879-6886 (1982).
XX
DR   GenBank; J01124; Positions       1     240.
XX
SQ   Sequence 240 BP; 86 A; 28 C; 42 G; 84 T; 0 other;
     ctgttttacg acagagggtt caaaaactac tataggtagg cagtggttgc cgacctctca        60
     tattgttcaa aacgtatgtg ttcatatgat tttggcaatt atatgagtaa attaaatcat       120
     atacatatga aaataaatat ttattatatg tatatggaaa aatgttgaaa tattcccata       180
     ttctctaagt attatagaga aaagcccgta ttttaaatgg atattagtag tgtaagctag       240
//
ID   NVBRP3      repbase;    DNA;    INV; 94 BP.
XX
AC   X64091;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   N.vitripennis repetitive DNA from B chromosome.
XX
KW   SAT; Satellite; Simple Repeat; NVBRP3; Repetitive DNA;
KW   satellite DNA.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-94
RA   Eickbaum C.D.;
RT   "NVBRP3.";
RL   Direct Submission to Genbank (27-DEC-1991)D.C. Eickbaum,
RL   University of Rochester, Dept. of Biology, Hutchison Hall 334,
RL   Rochester, NY 14627, USA.
XX
RN   [2]
RP   1-94
RA   Eickbush G.D., Eickbush H.T. and Werren H.J.;
RT   "Molecular characterization of repetitive DNA sequences from a B
RT   chromosome.";
RL   Chromosoma 101, 575-583 (1992).
XX
DR   GenBank; X64091; Positions       1      94.
XX
SQ   Sequence 94 BP; 35 A; 20 C; 19 G; 20 T; 0 other;
     tcgagtttga atcgtcagca tatcggagga aggcgaacga gggcgagaat ttaatttaaa        60
     acaataaacc ttaaacccac ctaccctata gaca                                    94
//
ID   NVBRP4      repbase;    DNA;    INV; 183 BP.
XX
AC   X64096;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   N.vitripennis repetitive DNA from B chromosome.
XX
KW   SAT; Satellite; Simple Repeat; NVBRP4; Repetitive DNA;
KW   satellite DNA.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-183
RA   Eickbaum C.D.;
RT   "NVBRP4.";
RL   Direct Submission to Genbank (27-DEC-1991)D.C. Eickbaum,
RL   University of Rochester, Dept. of Biology, Hutchison Hall 334,
RL   Rochester, NY 14627, USA.
XX
RN   [2]
RP   1-183
RA   Eickbush G.D., Eickbush H.T. and Werren H.J.;
RT   "Molecular characterization of repetitive DNA sequences from a B
RT   chromosome.";
RL   Chromosoma 101, 575-583 (1992).
XX
DR   GenBank; X64096; Positions       1     183.
XX
SQ   Sequence 183 BP; 70 A; 25 C; 36 G; 52 T; 0 other;
     gtcggggtaa tataatcaaa agtctcgact tatgattgga tattaaaagt atatcataca        60
     tcgatatgac aaataatttg catgtctaac gatattacgt cttaaatgaa gaagcagtaa       120
     attttataaa acaagatggg tgacgcttat aacacgagca gcagttgaga aagcaatgcc       180
     gtt                                                                     183
//
ID   NVBRP5      repbase;    DNA;    INV; 175 BP.
XX
AC   X64092;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   N.vitripennis repetitive DNA from B chromosome.
XX
KW   SAT; Satellite; Simple Repeat; NVBRP5; Repetitive DNA;
KW   satellite DNA.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-175
RA   Eickbaum C.D.;
RT   "NVBRP5.";
RL   Direct Submission to Genbank (27-DEC-1991)D.C. Eickbaum,
RL   University of Rochester, Dept. of Biology, Hutchison Hall 334,
RL   Rochester, NY 14627, USA.
XX
RN   [2]
RP   1-175
RA   Eickbush G.D., Eickbush H.T. and Werren H.J.;
RT   "Molecular characterization of repetitive DNA sequences from a B
RT   chromosome.";
RL   Chromosoma 101, 575-583 (1992).
XX
DR   GenBank; X64092; Positions       1     175.
XX
SQ   Sequence 175 BP; 51 A; 30 C; 38 G; 56 T; 0 other;
     taagttctcg gcttacccac ctattatccc ttctattgcg atggtttatt tctactagta        60
     gtataagaaa taattacagc aagtttggtt gaaatcgaag gttgggaatc tggacaactg       120
     ggcgctagta gttgtcaaga aggaatctga atcacgaata tagatctttg tcgac            175
//
ID   ORGANDY_BM  repbase;    DNA;    INV; 548 BP.
XX
AC   AB091367;
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   17-NOV-2004 (Rel. 9.10, Last updated, Version 1)
XX
DE   Bombyx mori transposon Organdy.
XX
KW   MITE; ORGANDY_BM; miniature inverted repeat transposable element;
KW   terminal inverted repeat.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Komoto N., Sezutsu H., Yukuhiro K., Banno Y. and Fujii H.;
RT   "Mutations of the silkworm molybdenum cofactor sulfurase gene,
RT   og, cause translucent larval skin.";
RL   Insect Biochem. Mol. Biol 33(4), 417-427 (2003).
XX
DR   Genbank; AB091367; Positions       1     548.
XX
CC   A MITE (miniature inverted repeat transposable; element)
CC   inserted in the silkworm og gene (molybdenum; co-factor
CC   sulfurase) in a mutant, ogt.
XX
SQ   Sequence 548 BP; 144 A; 127 C; 120 G; 157 T; 0 other;
     tgccggaacc acactgcgct attcgctatt cgttatgcga gctattcacg cgcatacggc        60
     gaagtgtgga gagtatattc gccaatattc gctttattcg tacgcataac acataaggac       120
     gaatagcaaa tacgcgtatc cgtcgacttg tcggtttttt gacacacttc aaaggacacg       180
     aataagccga atatgcgcat cgactgccca cacttcggta tgtcattcgc tcgcttgtga       240
     gttgtagcgg tcgtgtatcg acgtgtctta tgacttgtaa tcatccacca gcgttttctt       300
     ttcggtcttt cagtaacttt ttacaacaag tattggtaag aaacatttag gaaataataa       360
     attgcggcaa ctctcaacac gtccatcgct ccacgcaaac aagacacata tttgccttat       420
     ttggcataat tcagcgcaca agttcgaagt gtggatggca tgtttgttgt ttgcgcgctt       480
     cacagatatt ttggcgaata cggcgtagtc acataacgaa tggcgcataa cgcagtgtgg       540
     tcccagca                                                                548
//
ID   ORTE-1_AAe  repbase;    DNA;    INV; 9510 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-JAN-2021 (Rel. 26.01, Last updated, Version 3)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORTE-1_AAe.
XX
NM   ORTE-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-9510
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1124-1124 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >98%
CC   identity.
CC   This family encodes OTU superfamily cysteine protease upstream
CC   of apurinic-like endonuclease. It is positioned at the sister
CC   lineage of the lineage including RTE and RTEX in RTclass1.
CC   The sequence 5639-6171 is an insertion of Mariner. The sequence
CC   6463-6691 is ~82% identical to Sola1-N9_AAe and is masked by x.
XX
FH   Key           Location/Qualifiers
FT   CDS           580..5331
FT                 /product="ORTE-1_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MDLFNXDINDFQTAVVQKIPAGSFITAIMLQINKINS
FT                 EFKNHQLNEMEFCCLIADFIRCNDHLFSKMWEEDIKEVVHKIFSMESGVEV
FT                 HMAQAIVELFQTKICFYQKKREVEVIQPNSCSNTNMLTEINILFTFEDGTE
FT                 KFYSIQSITDKKSSGKKESGYNEQPRNELYKVKEYESGREMMVKKIKGDGN
FT                 CFIRAIIDQMNKSEDYYRCNLSDIIELRNKIANHMNKNRERYEMYLIESLE
FT                 ENGFLKFIEDIRKPGVYLGHESMVAVTEIFDKCILLYQTDSETLRIGEEKD
FT                 REEDVLRLLYTGENGVKNHFDSIRIVKGQTEENTGTEKTSVEEVKEKESYT
FT                 SMHGKHNDDSEEISTIRYRKTQDTPITGKQIKETGKLVQEEGKQWQWNKER
FT                 NNQKKSDDKKAVEKNMDERGNETRKITREKHKPINKDRAITKDFITDNRKE
FT                 EILDLEEKRRRQRSKEREDRLEQLATQIKTNEERSMLINGSQRQGWEENDS
FT                 QERLDREKQAKTDKNTRGRIQMDVQGKTEEPLSIVNDEQVRKENNTKDVKL
FT                 GDKKENPRISTKQRNDRKRAKNERVDEEGVQENSDTMDGGTKKHRNHVAEE
FT                 RGETRKGQVIESEESRATGVKATGEIGEENEEVKESIMLIATLNIRGCSKL
FT                 EKRQEIDNMLESFNIDVAALQEVNVKAELITTRNYEWRIGGQGQNKSRGLA
FT                 ILIRKDKGIDVMEWKEIGKYGLSISLLSKGRKIILINVHGPNKNGYIFYSS
FT                 LGKLISQDHLRSNLIMVGDWNAQIGKDSVMPEDAECIGNRLGFSNNNDNGE
FT                 EFKMFLTIHKIKNMSTVIGKNTDITWKSGKKESQIDHVLKPREGKIEIRFI
FT                 KGYWTGINTDHKMIVTGIRTREKENKEKGKKKIPIDASVLKYDTIKEKYQE
FT                 ALKKYEIRQEKGNTIEXDFKAVAGKMKKAANEVLRSARAPLTPIRKAALNK
FT                 LKTAINLSNKHPDIFPYRWKLKDRRMEFQAAIRSHNERKIKKFYKELNDFD
FT                 VAVRIKKSYQFLKGFLKRKKHKNVYIPMSQWNEALKESEGPEIQLMDEHDT
FT                 CPVTVPPKEEEMMQIVQQQCNGKSAGADGIRMELLKYADKQTQQELADIWK
FT                 RVWIENHLPEDMEKTIQVPIPKNAKAKGVQDFRRISLCNVAYKPYAKWIKQ
FT                 RLREFTGEPDINQAAFTEGRSTDDHMFVTRRILEEYWNAGNPLYVAALDIS
FT                 KAFDNVSLLQLRSILAKLNVPSHLIDRVLQCIRKEKIRVRWQNQYTTECNR
FT                 GKGVKQGCPLSPFLFNIVMQNVVRKVKEKVPELNLMNTGSLKLPLILIFAD
FT                 DILIITKDEEGLKRILIALEESLREVGLEINNDKSQILIRAPNATKRPPNT
FT                 INLNGRNYDVKTSMRYLGAWLTDTLNRPATTKQRCVNAAKVSKLVVEFCKK
FT                 FKPTWEIGKLIYNTVIAPSILYGTKTATLTKRSRVQLGKYEKQILKDIWNQ
FT                 CRKTDERKFNVRKELKGKTINRRVRVNRISYYGHIQRREETHPIKMAMKLK
FT                 FNKKKHGRPSFTWKKSLEQDFNRYNGITEEEWSQIAQDRDKIKKKAEEIYR
FT                 NNESEISDGEDSTEQDM"
XX
SQ   Sequence 9510 BP; 3627 A; 1270 C; 1962 G; 2420 T; 231 other;
     acggattaat ggtgtgaatg tgaacgggag gtttcgaaag acaaatgcat gaacggagct        60
     agcgagtgat aaatcgggag cggggagacg aagtgagagg ttggtgcgag agagacgaag       120
     tgaaaggtgg gtgatagtaa agtaggtgag atgtgtgaga ggtaaatata tagacaatgg       180
     agtgaagtga ccattggatt attagtagta gtgtaggtca atcaagaagt ggtgaaggtg       240
     gtagtggcga tgacggttag gatgccatag ataatatata aagcgacttg gtggtgttga       300
     agaaatgaga agggtgtaga gaagagcgga aaagaaaggt gaattgaaac acaggggtgt       360
     tcaactgaat tgggctacgt gacaggattg gagcgataag agaaaaataa gtgaaaggta       420
     ttaattattt aaaactaagg taagacgact gatgactgga atgcattcta atacactgat       480
     gaattaaggt aagactagat ataagcaaat atatattatg agttttcttt ttctttatca       540
     attatagcat aacatttata actacacaaa gagtacaaaa tggatttatt taatwttgat       600
     atcaatgatt ttcaaactgc tgttgtgcaa aaaataccag caggttcttt tatcacagct       660
     attatgcttc aaattaacaa aattaattct gaatttaaaa atcatcaatt aaacgaaatg       720
     gaattttgtt gtttgatagc ggattttatt aggtgcaatg atcatttatt ttcaaaaatg       780
     tgggaagaag atataaaaga ggttgttcat aagatttttt caatggaatc gggagtggaa       840
     gttcacatgg ctcaagcaat agttgagctt tttcaaacga aaatatgttt ttatcaaaag       900
     aagcgggaag tagaagtgat tcaaccaaat tcgtgttcta atacgaatat gcttacagag       960
     ataaacatat tgtttacgtt cgaggatggc acagaaaaat tttatagcat tcagagtata      1020
     acggacaaaa aatctagtgg taaaaaggaa agcggataca atgagcagcc tagaaatgaa      1080
     ttatataaag ttaaggaata cgaatctgga agagaaatga tggtgaaaaa aattaaggga      1140
     gatggaaact gttttataag agcgatcata gaccaaatga acaaaagcga ggattattat      1200
     aggtgtaatt tgtcagatat aatagaatta agaaataaga ttgccaatca tatgaataag      1260
     aacagagaac gttatgaaat gtacttgatt gaaagccttg aggagaacgg ctttttaaaa      1320
     ttcattgagg acataagaaa accaggagta tatttaggac atgagagtat ggtagcggta      1380
     acagaaatat tcgataaatg tattttgcta taccagacgg attctgaaac attgaggatt      1440
     ggagaagaaa aagatagaga agaagatgtg ttacgattac tatatactgg agaaaatgga      1500
     gtgaaaaatc atttcgacag catcaggatt gttaaaggac aaacagaaga aaacacagga      1560
     actgagaaaa caagtgtgga agaggtaaag gaaaaggaaa gctacacaag tatgcatgga      1620
     aaacacaacg atgattcaga agaaatctct acaatcagat atagaaaaac tcaggataca      1680
     cccataacag ggaaacaaat taaggaaaca ggaaaattgg ttcaagagga aggaaagcag      1740
     tggcaatgga ataaagaaag aaataaccaa aagaaaagcg acgacaaaaa agcagtagag      1800
     aaaaatatgg atgaaagggg aaacgagaca cggaagataa cgagagagaa acataaacca      1860
     attaacaagg atagagcaat aacgaaagac ttcataacgg ataatagaaa agaagaaatt      1920
     ctagacttag aagaaaaaag aaggagacaa agaagtaagg aaagggaaga cagacttgaa      1980
     caactcgcga cacagattaa aacaaatgaa gaaagatcaa tgttaataaa tggaagccag      2040
     aggcaagggt gggaagaaaa cgacagtcag gaaagattag atagagagaa acaagcaaaa      2100
     acagataaaa ataccagagg aagaattcag atggacgtac aaggaaagac agaggaacct      2160
     ctaagtatag tgaacgatga acaagtgcga aaggaaaata acacaaagga tgtaaagcta      2220
     ggggataaaa aggaaaatcc aaggatatca acaaaacaga gaaatgatag gaagcgagct      2280
     aaaaatgaaa gagttgacga ggaaggagtg caggaaaatt cagatacaat ggatggagga      2340
     accaagaagc ataggaatca cgtagcagaa gaaagaggag aaacaagaaa gggacaagta      2400
     atagaaagcg aagaatcaag agcaacggga gtaaaagcaa caggagaaat aggtgaggaa      2460
     aacgaagaag ttaaagaaag tataatgtta atcgccacat taaatataag aggatgctcg      2520
     aaactggaaa aacgacagga aatcgataat atgttagaat ccttcaatat agatgtagcg      2580
     gctttacaag aagtgaacgt taaggctgag ctgattacta ctcgtaatta tgaatggagg      2640
     ataggagggc aaggacaaaa caaatctaga ggattagcga tactcataag aaaagacaag      2700
     ggaatagatg tgatggaatg gaaagaaata gggaaatatg gattatctat aagtttgtta      2760
     tcaaaaggta ggaaaattat cttgataaat gttcatggcc caaacaaaaa cggatacata      2820
     ttctactcga gtttagggaa attaataagc caagaccatc taagatcaaa ccttataatg      2880
     gtgggtgatt ggaatgccca aataggaaag gactctgtta tgccagaaga cgcagaatgt      2940
     ataggaaata ggttaggatt tagtaataat aatgacaatg gcgaagaatt taaaatgttc      3000
     ctaacaatcc ataagataaa aaacatgtca acggtgatcg gtaaaaacac agatataacg      3060
     tggaaaagtg gaaaaaagga aagccaaatt gatcatgttt tgaaaccaag agaagggaaa      3120
     atcgaaatac ggttcataaa gggatactgg actggaataa atacagatca caaaatgatt      3180
     gttacaggta taagaaccag agagaaagag aataaggaaa agggtaaaaa gaaaatacca      3240
     atagatgcat cagttttgaa gtacgatacc attaaagaaa aataccagga ggcactaaaa      3300
     aaatacgaaa taaggcagga aaaagggaac acaatagagc wagatttcaa agcagtagca      3360
     ggaaaaatga aaaaagcagc aaatgaagta ttgagatcag caagagcacc actaacgccc      3420
     attaggaagg cagcgctaaa taaactgaaa acagcgataa acctctcaaa taaacacccg      3480
     gatatttttc catatagatg gaagctcaaa gacagaagaa tggagttcca agcagcaata      3540
     cgatctcata atgagaggaa aataaagaag ttctataagg agttgaacga ttttgacgtg      3600
     gcggtaagga ttaagaaatc ttaccaattt ctcaaggggt ttttgaaacg taagaaacac      3660
     aagaatgtgt acatcccgat gagccaatgg aatgaagcat taaaagaaag cgaaggaccg      3720
     gaaattcaac tgatggacga acatgatact tgtcccgtga cagtaccacc aaaggaagag      3780
     gagatgatgc agattgtgca gcagcagtgc aacggcaaat cggccggagc agatggcatt      3840
     cggatggaac ttctgaaata cgccgacaaa cagacgcaac aggaactggc tgatatatgg      3900
     aaaagggtat ggatagaaaa tcatctgccc gaagatatgg agaagacgat tcaagttcca      3960
     attccaaaaa atgctaaggc taaaggagtg caagatttta gaagaataag cttgtgtaac      4020
     gttgcttata aaccgtacgc caaatggata aagcagagat taagagaatt caccggggag      4080
     ccagacatca atcaagcagc gtttacagaa ggaagatcaa cggacgacca tatgttcgta      4140
     acaagaagaa ttctagagga atactggaat gcagggaatc ccttatacgt ggcagcctta      4200
     gatatcagca aagcatttga caatgtaagt ttactgcaat tgagatccat attggctaaa      4260
     ttgaatgtac catcccacct tatagatagg gtattgcagt gcatacgaaa agaaaagata      4320
     agagtaagat ggcaaaacca atacaccaca gaatgtaata gagggaaagg ggttaaacaa      4380
     ggatgcccac tctcaccttt tctgttcaac attgtaatgc agaacgtagt taggaaggtt      4440
     aaggaaaagg taccggaatt aaatttgatg aacacaggat cacttaaact accattgata      4500
     ttaatatttg cagacgatat tcttattata acaaaagatg aagaaggact aaaaaggata      4560
     cttatagcac tagaggaaag tttaagagag gtaggactgg aaataaataa cgacaagagt      4620
     cagatattga tcagagctcc caacgcaaca aaaaggcctc cgaacactat aaatcttaac      4680
     gggaggaact atgatgtaaa gacatcaatg agataccttg gcgcatggct gacagatacc      4740
     ttgaacagac ctgcaactac caaacaaaga tgtgttaatg ccgcaaaagt atccaaattg      4800
     gttgtagaat tctgcaagaa atttaaacca acatgggaaa ttggaaaatt aatatataac      4860
     acagttattg caccatcgat cctttacggg acaaaaacag ctacactgac caaaagaagc      4920
     agagttcaac taggaaaata tgagaagcag atactgaagg acatttggaa tcaatgcagg      4980
     aaaacggatg agcgtaagtt caatgtacgg aaggaactta aaggaaaaac gataaatcgt      5040
     agagtcagag tcaatcggat tagttactat ggacatattc aacggagaga agagacacac      5100
     cctatcaaaa tggcgatgaa attgaaattt aacaagaaaa aacatggaag accaagcttc      5160
     acgtggaaaa aatcattaga acaggatttc aataggtaca acggaataac agaagaagag      5220
     tggagtcaaa tagctcagga tagagataaa attaaaaaga aagccgagga aatatatagg      5280
     aacaatgaaa gcgaaatttc tgacggggaa gatagtaccg aacaagacat gtagtaaata      5340
     attgaagaag tatcaaaaaa aaaaaaaaac atacacaaaa acctacaaaa tttacacaca      5400
     cgcataaaca tattggaaaa taacacatat gagtatgcac aaatacgaat tatacatata      5460
     aaaagatacg aaaacaaata tacatacaca aaaacatatg ataactcaca cgaaacacta      5520
     atacactcaa tcactcataa acacatacaa aataatcaat aatgaaaatt actctgaaaa      5580
     tacacaaaac atagatacta aaataaacac acacataaat tacacataaa cacatataca      5640
     ggattgaaca gaacatttgc aacttttccg gttttccata cggaatggcc ggttttggta      5700
     ggtttgatct cggttgtttg tgggccgaat tgagtgagat tttcacggag cattggattt      5760
     cggcacatgt ttttgaatgg tttttccgat tatgggtttg gatgtagtgg cggtttgact      5820
     gaagtgaaat ttgaaattta atacccctac acaaaaactg tcttcagcaa acttgttcat      5880
     agcgtcaaaa tagacaactt tgctgaaaat atcatcaagc tattctgtta acgtgttgag      5940
     ttatgtcaat aaaaaaaaaa tcgtaataag ggtcgctttg gtcaaaccat taatgctttt      6000
     gaactcgtgg ttggggggat cagtcggagg catgtgttga ggttcgggtt gtgcctggtg      6060
     ttctgtgggg gtttcattcg ggtcggtccg tggatagctg gggtctggct tgccggggtt      6120
     ggtcgtttcg tgtggggacc ggggaggttg cgagtgtttt gtcaaatact gtaaatacat      6180
     acaagacaaa ataacacaag cacatgtata tatatatgag aacacatgca gaaatagaca      6240
     ttgacttata acacaaatta aagctgtttt aaaaagataa ttactcaatt ttaataataa      6300
     acacatagca ttagtacaag aatgacatgc agtcatcagt cgtttgagtt ggtcaaaaga      6360
     aaataaaatt gttcgattta aaaaatgcaa ggaatttgaa tatcatataa ttaactagaa      6420
     ataataacta cacttgttta ctttcgagga atgattagaa taxxxxxxxx xxxxxxxxxx      6480
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6540
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6600
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6660
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xttaagaata tagaaaactc ttctcttcac      6720
     ttttgcatgg gatgttttag attagcagtg tttgttcgtt ttactggtga ttttagtgat      6780
     gtcattgtgt tgtgtgggtt tttcttttat agccagtaga ttgttgcaga gcgcccaaag      6840
     gggttcagat tatgatcata gtggaattta ttattttctt gttataaata atataagaat      6900
     ataaagaata attacaatta tcttcattgt acaatgcaaa tcataaactg aactccttaa      6960
     taataaatgt ctagttattt tttatatgtt aaccaattag aagttttgaa gtagtacaat      7020
     aaagtagatt agtaaatgtg tatatgccga aaaaaagtct taatgccaac caaagttata      7080
     acaaggttca gtcgtagcat taaaattcag aataacttgt catgccgact gaatgttgtt      7140
     tataaaaatc aaagaagaat aatcataata ataaaaataa acatggtgga gggaaatgat      7200
     agcaacgaga agcatcataa taattctatg agaaatttat agcaggttat aaataaatat      7260
     gatgattatt tctactgtta acttattatt caaatcttta aaaatagtta tagaatgaaa      7320
     cattgctatt gcctgatatg aaattaaaat aattgaaaaa acattaataa aatcaataat      7380
     tagttttgaa ttcaaaaaaa aaaataaata aatacaaata ttaaaaataa taaagataca      7440
     taatgatttg gatgatgtga gggaggatgg gaggtcgttg ctatcatttg tctgtatgta      7500
     taaacataaa ataaatgtta aaataaacaa gtatgtataa ttttagtcgc tattaactga      7560
     tggatatact ggtaagaata catattcgtc ttgtttgcga gcagtgaaca gtaaattata      7620
     catctattgc agtttaacct gatgaaacta cagagtataa tgaccgttac ataaccgaat      7680
     tatattaaca ctagtatgtt aaattcaaat ttctaatgaa ttaaatttca tttctattaa      7740
     atttatagag aacaaaatag gaataatcga tggatcgatg ttggagctgc aaacagacta      7800
     aagctgcata ttgcacacgg tcctctatgg agttatattt cataatttct tctctctata      7860
     tataaaacat tttaggggca gcagcaggaa ggtgtgagca tttaaatagt gttaaaattg      7920
     aagctctgaa ccgtatttct cttaggtacg aaaagcgtta aaaacaaaac gtaggatgta      7980
     cggagtatca taatggttat attatattgt agtttattgt acgagacctt ttggaacaat      8040
     aaatcgtcaa ttgggaaatt cggatatgaa gtggtgttgc acgaaagtaa catcagtagc      8100
     aacagtgttg tcgtttcata caagggacta gtgtgtaatg ttattttatg ttatattgtg      8160
     tagcgttgta ctatatctac tgttcatagg taataaatag gtatacaaat aattcctttg      8220
     gcgcataaaa taacagataa ttcttattcc ttatagctac tagtccagtg gaggtgcacg      8280
     aattacttat ttataattgt tttgttatac taattcattg gcagaaattc cagaagcgtc      8340
     atggagtcat cggagatact aacataatca ctgctattaa tatttcagca gttctattcc      8400
     gaaaactgta attcgtcctt actctggaga ctacctaacg aggttcaatt catcacaatt      8460
     taagaatgga aattctgata catctatatt catatcatat acaactataa attccattct      8520
     atatatttta ttatagttat ttcatttatt atatgctggg tattgagagg gtgcattagg      8580
     gcatcagaga agtcacagat ggacgatgta gtagggtgtc agccgaaatc taggagaatg      8640
     tgccgtaaca tccttacact acatgctgct acttataaat gactttaatg taattatctt      8700
     tgtttaatac agtaggctat agcgaatgaa acgaagcgtc ggatgtatta ttattttgtt      8760
     tgtactccat gaacatatgg aagctggaat tttgtttttg atgtatccgg aaactttatt      8820
     aacatatcac tgattttttt atttttattc aaattatttg tttattctta tcattcttct      8880
     gtcgaccagc ctaggagcat ctgtagcaca aatattcaaa agaaaattat atgtcggccg      8940
     atataatact gcatgctgtt tcactgcgtc ataatttatt gtaactacca ttttattttc      9000
     atattttatt atcatattat tatatatata tacattataa tcttatctac tatataacat      9060
     atcaatataa ttgaattttt catgatttgg gaagggaggg agcatcaggg catcattgaa      9120
     attacaactg gacaatgaag tggagtgcca atcggagtca ggaggaaaag tggtagtcgt      9180
     tcacgtctag tacttttctc tccaacagtt gtgaaagatt tgacgcgccc ttcttctaac      9240
     aaacctttcc gtggaaagct cgacaagtaa tgcaaattct aatactcaat ctgttggatc      9300
     atatggctgg aaggagattc tctatttccc gcgggtttcg cgtaagtgtt tctacttacg      9360
     ggtccgccac cccccttttg gcccttcata cagcgatatg ttgaatgcag attggtaata      9420
     aaatttgacc ttactgttga gtggagccgc atgcagagca agactcaagc aaggattggt      9480
     ggctacctac atacatacat acatacatat                                       9510
//
ID   ORTE-2_AAe  repbase;    DNA;    INV; 7050 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORTE-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7050
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1125-1125 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 4 sequences with >98%
CC   identity.
CC   This family encodes OTU superfamily cysteine protease upstream
CC   of apurinic-like endonuclease. It is positioned at the sister
CC   lineage of the lineage including RTE and RTEX in RTclass1.
XX
FH   Key           Location/Qualifiers
FT   CDS           1538..5515
FT                 /product="ORTE-2_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MENIAVNGDIGEXYGSLHKALIEQIQVADSRFRSFNF
FT                 SKEVFDRLIAPAVNNKLYKKIITNREVIKLFNRNSIKDVRIICATAEIFCT
FT                 IINIFFNGIYKLSVIPDNGCRMEEGIEFNIDCTTRKSALQFKSCKTQNNHE
FT                 IESRIRDKMAKKIRQNKDEEFGIYETVIFDKATKIRIKKIKGDGNCLIRAL
FT                 IDQLRGKTQDDYVTSKDIQDLRNRIADHMTKNKERYEPFLIESLEEGGFEK
FT                 FINLSVRQMGVWLGHEVMVAVSEIFGKNIIVHQVDEPDVIIGENGRSEEQT
FT                 LRIFYTRTVEGGEKNHFESVIEVLDVENSSQGQIIIQENENDDTMEVGNVV
FT                 EELNVENDNIIRIKQMSRSDNETERLQNNQPFQRFIRVASLNVRGCIKEEK
FT                 RNEIDELMTLHNIDVVALQEVNALGEIIETKNYKWIAPLNRPNKTRGLALM
FT                 IRKNEEISLGDVRMKSSSIMSAEIIINDCWKFLLVNIHGPNKAAYNFLAEL
FT                 GTVIGKDHIRNKTLILGDFNAQIGRGDVDEEDSQIVGDKLGFDXSNENGEE
FT                 FIMFLKLHKLINISSKIGVNTNVTWRIGKKESQIDHVLLPKDSDLRXRYVR
FT                 GFWTSLNTDHKLLMVGLTFENNTIKRXRKKFKKKLDYSALKYDVVKKKYCD
FT                 ALTQYDNDEVREVRKDIHKLYKEVIEKLKSSSDKALETSKAPLTPKRKKAL
FT                 GRLNKALKLWKKHPDMLPYKWKVLNRKEEFKIAEKEHIEKTIKEFYRNLKD
FT                 FDVGVRIRKSYIFLKDFMKKRSRKNAYIPTRLWNEVLKQSEGPNVTFLEKN
FT                 DTCPLTEPPSKEEMSSIIFNSCNGKSAGPDGIRXEMIKYADEKTFNDLVLI
FT                 WQRMWIDNVMPKDLSCTTQIPIPKVSYPRKVEDFRRISLCNVIYKPYAKWV
FT                 KNRLKEFTGDPGLHQAAFTEGRSTDDHIFITRRIMEEYWNGGEQLYIASLD
FT                 IRKAFDNVKLENMKEVLLELNVPTHIIDRVLLCLNEDRTRVKWQNQWSEEI
FT                 NRGKGIKQGCPLSPFLFNLVMQNILKAVVEKVPELKLMEIELLDLPLILVF
FT                 ADDVLIIARSRKELEKIVKALEECLPTVGLEINEEKSHVIIRAPNKMGDIP
FT                 STILLNNKSYKTCKTLKYLGITLTENLNRPATVKQRCINTAKASKVVVEFC
FT                 KQFKPSWTIGKLIYNTVIAPAILYGTKVSTLTKRSRKQLAKYEKIIVKSIW
FT                 HHCTKENDNKLNIRKELNGKTINRKIRVGRISYYGHIKRRPQNHPLKMAYR
FT                 FKFNKKKEGRPSYTWKDSLKQDLDRYRNISKEEWKTLANDKHKLKQKAEEI
FT                 YKQEESENSDGEDS"
XX
SQ   Sequence 7050 BP; 2698 A; 850 C; 1497 G; 1996 T; 9 other;
     gttgtgattg aagtgagacg caaattcggg gtatgaaaac gagtttcatg ggactgtttt        60
     tggtggattg tgattcggag ggaggttggt gaaggtgggg gaagtttgtt ttttgtacag       120
     aaacggtcag atagattgaa gttggaggga aaaaagaaaa tagtcgagaa atagcggaaa       180
     actagtccag tttgccgtgc agatatgggt gcatcagtgt gagtgtgtgc agtagagtcg       240
     aatcagagag ttttattgag agatcttgtg ggagtgttta agtattgaaa acagtggggt       300
     actggaagcg gtctggaaac acggaggaaa gtgtttgttt tggaagtttg tttttccaag       360
     tttgtgatga agcggaaggg ttatgtaggt tgaaattaga gtcatctcat aagaatacct       420
     tattatgtgg ctttgagaag attgaagcag tgtgtacatg acaagggggg aagttatgtt       480
     ggaaactgag cagaagaaga agaagaagaa gcaagcggat cacagtacgg atagaaagtt       540
     gatgaaagga aagtgcgtta ctagctagaa agacgggaag ggtgcgaatg tactagtagt       600
     ggtgttcggg tttttgatga agaggtgtgt ggagcagacg gcatgttggt attggtaaga       660
     tagagtgaac ggaagtcaaa acgtgcgcaa aacatgtaga agtgaatcaa aatagtcaag       720
     tgattgatta gggtggacca taaatagatt ggaatttggt ggtctgaaat ccataaactg       780
     tcctcttttt gttgatgtgc tattgggagc aatgtaggaa ttgttgatca tcaagataat       840
     ttttatcaat ggagatcata ttagtgaagt ggaaaagatg aacaagaagg ttttgttcag       900
     agaggaaatt ttaaatgatg agaattgagg attacggatg tcttaaacag aaaatgcttt       960
     aattgaagtg taaatcgaac atacggttgg atcattaaat gtgaaaagcc aagacgggca      1020
     gctataacaa atcgtaattt cgggaataca ggtattataa tttaaagtta agttacaata      1080
     aaatacctaa ctataataaa taatacataa taaaagagaa aagttaattc ctcgggcggg      1140
     ctagtggaaa tcattgcaag gtaaggaaga tttgaatctt atattgctat tatcatattt      1200
     attcttccat tgaatttgtt ttacataatg aaataatctt tattagcttc cagttcttca      1260
     gttatcatta ataaaaatta tatatttctt gaaacatcag tagaattatt taacaacatt      1320
     taaatagtac agaggaaaac aaacagggca aaaataggcc cagtagatat cattgatgtt      1380
     atcaattaat gcgcagaggt atagctaatt ttcatttcta cttattactt atttcttact      1440
     wattttttac gcataattca agttatatat tgaaatttct cattaaaaat taattattgt      1500
     tgaataatta gggtaaggtt cataaaaaca aaatagaatg gaaaatattg cagtcaatgg      1560
     ggatattgga gagkgatatg gcagtctaca caaagcatta atagagcaaa ttcaagtagc      1620
     tgatagtcgt ttcaggtcat tcaacttttc caaagaggtt tttgatcgtc ttattgcgcc      1680
     cgcagttaac aataaactat acaaaaagat aattacaaac agggaggtca ttaaattgtt      1740
     caacagaaat agtattaagg atgttcgtat catatgtgct acggcggaaa tattctgtac      1800
     gattatcaat atatttttta atgggattta caagctatca gttattcctg ataatgggtg      1860
     tagaatggaa gaggggatcg aattcaatat tgattgtaca acaagaaaat cagcattaca      1920
     attcaaatcc tgtaagacac aaaacaatca tgaaattgaa agcagaatta gggataagat      1980
     ggccaagaag ataagacaaa acaaagatga agagtttgga atttatgaaa cagttatatt      2040
     tgataaggca acaaaaatta gaattaagaa aattaaaggt gatggaaatt gtctgataag      2100
     agcgcttatt gatcaattaa gagggaaaac gcaggatgat tatgtcacaa gtaaggacat      2160
     tcaagattta agaaatagaa tagcagatca catgaccaag aataaggaac ggtacgaacc      2220
     ttttttgata gaaagtttgg aggaaggcgg atttgaaaag tttattaatc ttagtgtaag      2280
     acaaatgggt gtatggctag gacacgaagt aatggtagca gtcagcgaaa tttttgggaa      2340
     gaacataatt gtacaccaag tagatgaacc agatgttatt ataggtgaaa acggaagaag      2400
     tgaggagcaa acgctgagga tattttatac cagaactgtg gaaggtggag agaagaatca      2460
     ttttgaaagt gttattgaag tgttggatgt ggagaacagt tcacaaggac aaattataat      2520
     acaggaaaac gaaaacgatg ataccatgga agtaggtaac gtcgtagaag aattgaatgt      2580
     agaaaatgat aatataatca gaataaaaca gatgagtagg agtgataatg agacagagag      2640
     attgcaaaat aaccaacctt ttcaaagatt tatcagggta gcatccttga acgtaagagg      2700
     atgtattaaa gaagaaaaaa gaaatgaaat agatgaacta atgacattgc ataatataga      2760
     tgtagtggcg ctacaggaag tgaacgcttt gggagagatc atcgaaacaa agaactataa      2820
     atggatagca cctttgaaca ggccaaataa aactaggggt ctagcactaa tgattaggaa      2880
     aaatgaggag atttcgttgg gggatgtaag aatgaaaagc tcatcgatta tgtcggcaga      2940
     aattattatt aatgattgtt ggaaattcct tttggtaaac attcatggac caaataaagc      3000
     agcatacaat ttcttagcag aactgggtac agtaatcgga aaggatcata ttagaaataa      3060
     aacactaatt ctaggagatt ttaatgccca aattggtcgt ggtgatgtag atgaggagga      3120
     tagtcaaatt gttggagata agttaggatt tgacamaagc aatgagaatg gagaagaatt      3180
     tatcatgttt ctaaaattac ataaacttat taatatttct tcaaaaattg gtgtgaatac      3240
     gaatgttaca tggaggatag gaaagaagga aagccaaata gaccatgtac tattacccaa      3300
     agatagcgac ctaagastaa gatatgtgcg agggttttgg acaagtttaa atactgatca      3360
     taaattattg atggttggat taacttttga gaataacact atcaaaagaa awaggaagaa      3420
     gtttaagaaa aagttggatt attcagcact aaaatatgat gtggtaaaga aaaaatattg      3480
     tgacgctcta acacaatacg ataatgatga ggttagagaa gtgaggaaag atatacataa      3540
     gctttataaa gaagtaatag aaaaattgaa aagttcatca gataaagcat tggaaacatc      3600
     gaaggcgcct ttaaccccta aaaggaaaaa agctttagga agattgaata aggccttgaa      3660
     attatggaaa aaacatcctg atatgttgcc ttataaatgg aaggtactga ataggaagga      3720
     agagtttaaa atagcagaaa aagagcacat agaaaaaact atcaaggagt tttatagaaa      3780
     tttgaaggac tttgatgtag gagtaagaat taggaagtca tacatatttt tgaaagattt      3840
     tatgaaaaaa aggtctagga agaatgcata tattccaact aggttatgga atgaagtttt      3900
     aaaacagagt gaagggccta atgtcacttt cttagagaag aacgatacct gtcctttgac      3960
     cgagcctcca tcaaaggagg aaatgtcttc gatcattttc aattcgtgca atggtaaatc      4020
     agcaggacca gatgggattc gaatsgaaat gataaagtat gctgatgaga aaacttttaa      4080
     tgatttggtt ttgatatggc aaagaatgtg gatagacaat gttatgccta aggacctttc      4140
     ttgtacaact caaattccaa ttcccaaggt tagttatcct agaaaagtag aagattttag      4200
     aagaattagt ctttgcaatg ttatttacaa gccgtatgcg aaatgggtta aaaaccgact      4260
     aaaagaattc acgggagacc cagggcttca tcaagcagcg tttactgaag ggagatcaac      4320
     agatgaccat attttcatta cgcgtagaat aatggaagag tactggaatg gaggagagca      4380
     attatatatt gcgtctttag atatcagaaa ggcgttcgat aatgtcaagt tagagaatat      4440
     gaaagaagta ctattagaat tgaatgttcc tacacatatt attgatagag ttttattatg      4500
     cctaaatgaa gatagaacta gggtaaaatg gcaaaaccaa tggtcagaag aaattaatag      4560
     aggaaaagga attaagcaag ggtgtccatt gtccccattt ttattcaatt tagttatgca      4620
     gaacatatta aaagcagtgg ttgaaaaggt tcctgaacta aaattgatgg aaatagaatt      4680
     attagatcta cctttgattt tagtttttgc agatgacgtt ctcataattg ctaggagccg      4740
     aaaggagcta gaaaaaattg tgaaagcctt ggaagaatgt ttaccaacag taggtttaga      4800
     aatcaatgaa gaaaaaagtc atgttataat acgagccccc aataaaatgg gagatattcc      4860
     aagtacaatt ttgctaaata ataaatcata caaaacgtgt aaaactttga aatatctagg      4920
     aataactttg actgaaaact taaatagacc tgctacagtg aaacaaagat gtattaatac      4980
     tgcgaaagca tcaaaagtag ttgttgaatt ttgtaaacaa tttaaacctt cttggaccat      5040
     aggcaaatta atttataata cagtgatcgc accagcaata ttgtatggca caaaagtatc      5100
     aacgcttaca aaaaggagca gaaaacaatt agcaaaatat gagaaaataa tcgtcaagag      5160
     tatttggcat cattgtacaa aagaaaatga taataaattg aatatcagaa aagaattaaa      5220
     tggtaaaaca ataaatagaa aaataagagt agggagaata agttattatg gccacattaa      5280
     aagaagacca caaaatcatc ccttgaaaat ggcatataga ttcaaattca acaagaaaaa      5340
     agagggcagg ccaagttata catggaaaga ttccttgaag caggatctag acagatatag      5400
     aaacataagt aaagaagaat ggaaaaccct tgctaatgac aaacataaat tgaaacaaaa      5460
     agcggaagaa atctacaaac aggaagaaag tgaaaattca gatggtgaag atagttaaag      5520
     ctagaaagaa taaaagagat gaatattaca gtacagaata cgcaatggga taacaaatgt      5580
     aaaaaaaaaa aaaacaaatc taaataccta acacttataa aatgatttag ccggaaaagg      5640
     aatgacatat tgagaagata atgtatgtga actatgaaat gattcatata tttaacagtt      5700
     ttttcactca ctaccccatt agtcaaataa taatttgaat tatttatata tttattattc      5760
     atttatatat atatattaat ctatttactt tcttatttat ttacttattt attatatatt      5820
     tatttattta ttaaattatt tacaagaaca tcatttacag aaaattcacg aaaaacaatt      5880
     caatcaacac atgtccacat ggcacactgt cacgcttatt agttacgcta ctccatgctc      5940
     ttcaaattga aacggatcgt aatagtggtt tacctataat agtgtatcca gtgwatatac      6000
     catttttatg cgtaacgaat cgatctgaaa tactcacaag atattagagc atttagacat      6060
     tcaacaactt atgaaaatgt tattttmaaa ttaattttaw gaaattatct cataattaaa      6120
     cattgtttgt tacacattat tataattaaa tactggttga attgaaattc gttttttaga      6180
     tgatgatgta agatagacag aatgagaggg taaagggaaa aaatagtgag tggataaaca      6240
     aataaatata tattaatagg aggatgttat agacaaacaa gttcacatgg aggaaaaaaa      6300
     ggaaggaata atgttactag aatgaaatag ttggtcaata aagtatcgac aagttaggat      6360
     ttaccggtaa gaatcgtttt ttttagatac tcgtaaagat caatttataa tcaatgagaa      6420
     aacaaatata aggatcagat aggaaataca ataggctagt ttttaagtgt atttcacagg      6480
     ttgaataaat ggtgatgctg gctcaaattt tgacgcaagg tactggtggt cggattatta      6540
     aggtaagata ttgattattg ataaattata ttgaattgtt taacatactt aacatagtgg      6600
     gggtagagag ggagggtatc agactaattg cagactggat gagggattcg tggaaaccag      6660
     gcccaagtca aggaggtgat cgctgctatg gccaaaattc ttggattttg aacataattg      6720
     atgatgtctt ccaacagtct gcaattattc gacgcaccct ataggcaata ccttgttaca      6780
     aaccaccaga cggaaatctt aatatgtatt gcgagttgct gaatcatata atatgatcag      6840
     tcggttggaa ggagattctc tacccctgaa gtggattgcg cataggtcta agtacttatg      6900
     ggtccacact ccattttggc ccttcataca accgattaga gagtatttta tagtccagca      6960
     ccttgatctt gctattaaga ggaaccgtac gacatggcaa gtcctgcact ggtggtggct      7020
     ttatatcaca tcacatcaca tcacatcaca                                       7050
//
ID   ORTE-3_AAe  repbase;    DNA;    INV; 6180 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORTE-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6180
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1126-1126 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with 94-99%
CC   identity. This family encodes OTU superfamily cysteine protease
CC   upstream of apurinic-like endonuclease. It is positioned at the
CC   sister lineage of the lineage including RTE and RTEX in
CC   RTclass1.
XX
FH   Key           Location/Qualifiers
FT   CDS           981..5642
FT                 /product="ORTE-3_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MMTMTSNGIRRLGWFSRVLSLIKQRLFNSSHESNGLS
FT                 KLILKQICAKLNGVNFRQEDVDELNSIILSKIEGWEEDLNKFVEFFDNIQD
FT                 EGFDIAEMANHCLLLAVSQIFECEVRVSNDKDDCKIIGEGYKNSWFGVLEV
FT                 GMESSESVEKVTRALKXSSKIELGNCGKGMQVNGMAGKGNEPLIVKEECLW
FT                 HTTIGNWIIEIESKGEDDGKLYSGLMMNVIQKMNEGEIGEQEMMKVLEQID
FT                 LFFEMYGEVLNRLEEEVMINGNALYEIWKIVSKLAVALNREIIVLMXGGEE
FT                 IVLGVTERKRKFASFRLVAEFQEAGVRYYSIKSSKLIQEWKENMSIKPAID
FT                 VFEKRAEEVSYNLRFKESNQEAVIKRIDGDGSCLIRAMLDQMGRIDQNYYM
FT                 SDYNVMKLRNNIASYINNSRERFNVYLYEHIEEVGTFERVIEKIREKSYWL
FT                 GEEAIITVAELFEKQVEVYTNQGLSVRIGVRKGNESALRIFYTGDHYDSVI
FT                 SIAEEEAGEVEAEMINVNEAEGNEMQAGGESRAVKSNKVREVNESSSHSKK
FT                 ITQHGKQSTNTTGDSNNHEQSKKQVEKQLSQDTGIKGMENKALKIVSWNVR
FT                 GCRRKVKRDEIDDILVANDVMIAALQEVNTIGDDLSTNNYSWQVKDNHTNK
FT                 ARGLAIVVRKHQRIRILQAKECRKGIMWIKLTINGVKLIMINVHAPNSNQK
FT                 NFLSYLNEVVTRESDRKSLIVLGDFNAQIGSEDLQPEDRVWIGTKLGHRYC
FT                 NDNGELFKYFLHLSKLKNVSTKIGKSIEITWRTKDKSSQIDHVLVPQYTSF
FT                 RIRYIKGCWTDLKTDHVMLTIGLVFTNNPVLKKSNKETARINVDLLKIPEK
FT                 QKCFREKLSSIPTKTDIQTDTLDKCYEEMASRLRIAACNTLKVSTVPNTPR
FT                 RKYALDRLRDALKVSKKHPDMINYKYRVANRRHEYQIAVKEHREKEITDFF
FT                 KNLNDYDAGVRVRKTYNYLKDFVKRKKQKKAMISSRVWEDILKTCEGPEVE
FT                 FCAEHDYTPLPNPPTNDEIKSILFSACNGKSPGSDRVVAEYIKAADEETLE
FT                 RIIEIIKAVYIRNDMPKEWKKSTQIPIPKKSGASEADHFRRISLCNVVYKI
FT                 YAKWIAKQLRAYAGEPGLHQAAFTANRSTDDHIFVARRMMEEYWNSGQDLF
FT                 ILALDISKAFDNVKLQSIGKVLIDLGVPSRLVDRVLSCVKDEVTRIMWENQ
FT                 YSAEVKRGKGIKQGCPLSPLLFNYLMQDVLKKVVAEIPELKLMGINQLILP
FT                 LILVFADDILIIARTKAELEKILHELELQLAKVGLEINRDKSQVLIRYPND
FT                 KAQHPKEILLNNKIFKVSDSLAYLGICLTATLNRKLTCKQRCLSAVKSSRI
FT                 IVEFCKTFKPSWELGKLMYKTVIAPSLLYGTKVSVMTKKSRLKIGNYEKLI
FT                 LRNIYQYCKKPKDLKFNARKLLDGKTINRRIRVGRISYFGHVRRREKNHPL
FT                 KLAYKLKFDKKKEGRPSLTWLKSLDQDFERYQNMNRSSWEELSKDRERIKK
FT                 KLDEIYKNEESEISDGESSDGDQNSRYKHWKWKRRNEK"
XX
SQ   Sequence 6180 BP; 2245 A; 841 C; 1573 G; 1509 T; 12 other;
     catacgttga gtgactaccg ttgagagcgg acgtgtctgt gcttgcgtgc tgttacagtg        60
     gttcgagtga aaagatcgtt tctgcgattg ccgtgggagg aattgtgctg gggtttttgg       120
     gtttccggaa gtgccgtggt ggagcagttg ggtggtaacc gtgctgggtt tccgacggat       180
     tgggccggat cagtgatttg gccaamaaca cggctgggtg aaataggctt ttcggagagt       240
     agtgagaaaa cggaaaagca gctgtcggtg gagtgcggag ggggtkgaag cctagtggag       300
     gagtgcggag ggggtgaaag tgcggtgagg gttgcagtcg gtaaatcacg catttcagat       360
     tgctgattgt ttgtgtcctg aggagaaggc taaattcctg taactggggc agctggcgtg       420
     gttaaggggt tgttccgggg aagcggaaag ggagtgtgaa gtgtttggcc agaggaagtt       480
     ggkggaaaaa aaaattggaa cgccgaagaa agaagaaagt tttgaggcga gagtggcggg       540
     ggggtgctac ggtcgagagc ttcaacggaa gaaaacacga gtggtgtgag tgagaagacc       600
     ttgatcggtt ttggcggtaa agctcgttgc aggggttcga aaaaaaaaaa aaagaaaatt       660
     ggaagcgaga gtgagtgcca cgtagaagcg aagtggggaa gagtggcttc gcacactgtg       720
     agaggaggaa gtggagcatc gaaataggca agcggctgag tagcgacaga gagagagtaa       780
     gtgggaaagc gcatctgtag cggkgaggca gaaataagaa gcagggctgc tggtcgatcc       840
     ggggcgaata ctgtggagag cacgaaggaa gagcccaacg cagcgagact gagtgcaccg       900
     gtttcattgg tggcagtatt ggtgagtcat tcactttctc gttccaataa tttttccaag       960
     tatctcgaag tttggtcctc atgatgacga tgacgtctaa cggaattagg aggttagggt      1020
     ggttctcacg tgtattatct ttaataaagc agagattatt caacagtagc catgaatcga      1080
     atgggctgag taaattgata ctaaagcaga tttgtgcgaa attgaacgga gttaatttta      1140
     gacaagaaga tgtagatgaa ttgaattcaa ttattttatc taaaattgaa ggatgggagg      1200
     aagatttaaa taagttcgtt gagttttttg ataatattca agatgaggga tttgatatcg      1260
     cagagatggc gaaccattgc ttgcttttag ctgtttctca aatctttgaa tgtgaagtga      1320
     gggtcagtaa cgataaggat gattgtaaaa ttattgggga agggtacaaa aatagctggt      1380
     ttggagtgct tgaagttggt atggaatcga gcgaaagtgt tgaaaaggta actcgggctc      1440
     taaaagmgtc aagtaagatc gagttaggta attgtggaaa aggcatgcaa gtaaatggaa      1500
     tggcagggaa gggcaatgaa ccgttgatag tgaaggaaga atgtttgtgg cacactacaa      1560
     taggaaattg gataattgag atagaatcga agggggaaga tgatggcaaa ttatacagtg      1620
     gattgatgat gaatgttatt cagaaaatga atgaaggaga aattggggag caagagatga      1680
     tgaaggtgtt agaacaaatt gatctgtttt ttgaaatgta tggcgaggtt ttgaatagac      1740
     ttgaagaaga agtaatgata aatggaaacg cattatacga aatatggaaa attgtcagta      1800
     agttagctgt agcattgaac agagaaatta tagttttaat grraggaggt gaagagatag      1860
     tcctaggggt gactgaaagg aaacggaaat tcgcttcwtt tcggttggta gcagagtttc      1920
     aggaagcggg agtccgttat tactcaatta aaagcagtaa gctaattcaa gaatggaagg      1980
     aaaacatgag tattaagcca gcgatagacg tatttgagaa acgagctgag gaagtatcat      2040
     acaatttaag attcaaggag agcaatcaag aggcagttat aaaaagaatt gatggagacg      2100
     gcagttgcct gatcagagca atgctggatc aaatgggaag aatagatcaa aactactata      2160
     tgtcagatta caacgtgatg aagttaagaa acaatattgc aagctatatc aacaacagta      2220
     gggaaagatt caacgtttac ctgtatgagc atattgaaga ggtaggaaca tttgaacgag      2280
     tgatagaaaa gataagagag aaatcatatt ggttaggaga ggaagcaata ataacagtcg      2340
     ctgaattgtt tgagaagcaa gtggaagtgt acacgaacca gggcttgagt gtaaggattg      2400
     gtgttagaaa aggcaatgaa tcagcattga gaatttttta tactggagat cattacgaca      2460
     gtgtgataag tattgctgaa gaagaagcag gagaggtaga agcagaaatg ataaatgtaa      2520
     atgaagcaga aggaaacgaa atgcaagcag gaggagaatc aagggcagtt aaaagtaata      2580
     aggttagaga ggtcaacgaa tcaagttctc attcaaagaa aatcacacag catggaaagc      2640
     aatcaaccaa cacaacaggt gattcaaaca accacgagca aagcaagaaa caagttgaga      2700
     aacaattgag tcaagataca ggaattaaag gtatggaaaa caaggctctg aagatagtta      2760
     gctggaatgt tagaggatgc agacgaaagg taaaaagaga cgagatcgat gacattttag      2820
     ttgcaaatga cgtaatgatt gcagcacttc aagaagtcaa tacgattgga gatgatttga      2880
     gtacaaataa ttatagttgg caggtaaagg ataatcatac gaacaaggca agaggattag      2940
     caatcgttgt caggaaacat cagagaatca gaattcttca ggcaaaggaa tgcagaaaag      3000
     gtattatgtg gattaagcta acaataaatg gagttaaact aataatgatc aacgtacatg      3060
     caccaaatag taaccagaag aatttcctca gctatctcaa tgaagtagtg actagagaaa      3120
     gtgaccgtaa atcacttatt gtactaggag attttaacgc tcagataggt tctgaagatt      3180
     tacaaccaga agatagggta tggataggaa caaaactagg gcacaggtac tgtaacgata      3240
     acggagaact attcaaatat tttttgcatc tgtcaaaact taagaatgtg tcgactaaaa      3300
     tagggaaaag tatagaaatc acttggagaa ctaaggacaa atcaagccag attgatcatg      3360
     ttttggtacc acagtacacc tctttcagaa taagatacat taaaggctgt tggacagatt      3420
     tgaaaaccga ccacgtaatg ttaactatag ggctagtttt tactaataat ccagtcctaa      3480
     agaagagtaa taaggaaacc gcaaggatca acgtagacct ccttaaaatt ccggaaaaac      3540
     aaaaatgttt tagagaaaaa ctgtcatcga ttccaacgaa aacagatatt caaacagata      3600
     cgttagacaa atgctacgag gaaatggcca gtagattgag aatagcagct tgcaatacgc      3660
     ttaaagtatc tacagtaccc aatacaccac gcaggaaata tgcactggat aggttaagag      3720
     atgcactaaa agtttcgaaa aagcatccgg atatgataaa ttataaatac agggtcgcaa      3780
     atagaagaca tgaatatcag atagctgtaa aggagcatag agaaaaggaa attactgatt      3840
     ttttcaagaa cctcaatgat tatgatgcag gagtgagagt aaggaagacg tataattact      3900
     tgaaagactt cgtaaagagg aaaaagcaga aaaaagccat gattagctcg mgagtttggg      3960
     aagatatact gaagacatgt gagggacctg aagtagagtt ttgtgctgaa catgattaca      4020
     ctccattgcc taatcctcca acaaatgatg agattaaaag tattctgttc tcagcatgta      4080
     atggaaaatc tccaggatca gatagagtgg tagccgaata cattaaagct gcagatgagg      4140
     aaaccttaga gagaataata gaaattatca aagcagttta cataaggaat gatatgccga      4200
     aggaatggaa gaaatcaaca cagataccaa tacctaagaa gtcaggagct tccgaagcag      4260
     atcacttcag gagaatctcg ctgtgtaatg tagtgtataa gatatatgca aaatggatag      4320
     caaagcagtt aagagcatat gcaggtgaac ccggattaca tcaggcagca ttcacggcaa      4380
     acaggtcaac agacgaccat atatttgtgg ctaggagaat gatggaggaa tactggaact      4440
     ccggtcagga tctctttatt ctagcgttag atattagtaa agcatttgat aatgtgaagc      4500
     tacagtcgat aggaaaagtg ttgattgatt taggagttcc ttcgagatta gtagatagag      4560
     ttctgagctg tgttaaagat gaggttacta gaattatgtg ggagaatcaa tattcagctg      4620
     aggttaagag ggggaaagga attaaacaag gatgtccgtt atcaccatta ctctttaatt      4680
     atttaatgca agatgttctc aaaaaagtag ttgcagaaat cccagaattg aaactaatgg      4740
     gcattaatca attgattctt ccactaattc tagtgtttgc agatgacatt ctaatcatag      4800
     ctagaacgaa ggcggagtta gagaaaatat tgcatgaatt agaactgcaa ctcgcaaaag      4860
     taggccttga aattaatcgc gacaaaagtc aggttttgat tagatatcca aatgataaag      4920
     ctcaacaccc aaaggagatt cttctaaata ataagatatt caaagtgagc gacagtttag      4980
     cttacctagg aatatgtttg actgcgacgt taaatcgtaa acttacatgt aagcaaaggt      5040
     gtttgagtgc agtgaaatca tcgagaataa tagtagaatt ttgcaaaact ttcaagccaa      5100
     gctgggaatt aggaaagtta atgtataaga ccgtgatagc accgtcsttg ttatacggaa      5160
     ctaaagtgtc tgttatgact aagaaaagca ggttaaaaat aggtaattat gagaaactta      5220
     tactcaggaa tatttatcaa tattgtaaga aaccaaaaga cttgaaattc aatgctagaa      5280
     aattattaga cggaaaaacc attaacagaa gaattagagt aggaagaata agctattttg      5340
     gtcatgtaag acgwagagaa aaaaaccatc cactgaagtt agcatacaag ttgaaatttg      5400
     acaaaaagaa agaaggcaga ccatccttaa catggctgaa atcattagat caggactttg      5460
     aaaggtatca gaatatgaat agaagtagtt gggaggagct atcaaaagac agggaaagga      5520
     ttaaaaagaa actagatgaa atttataaaa atgaggagag cgaaatttcc gatggggagt      5580
     cttcagatgg ggaccaaaac tcgagataca aacattggaa atggaaaagg aggaacgaga      5640
     aatgatgcga ttcagaacga ctggagttga agaagagagg ggagaagatc accatattgt      5700
     gcattgccag aataaaggta ttgtaagtac aaatcaatgt tttaaatatg taaaasggaa      5760
     gtcaaacaag tatacgttat actgggaagg tttaatctaa tggtaagtga aataattaca      5820
     aaacataatc aatagcacca atcgtaactt tcatatatta tatatcaaac aggacaccca      5880
     attgaagcaa tatggatgag gagagtggaa ttgccaactc cttatcgcta acatactgtt      5940
     gatagaggga tggtccttaa accccactca ttgagacatc cttttgtatg atgaaatgac      6000
     cggtagatcg gtgaccagta tctaggttat aatttttgga atgccttagg taaaccttaa      6060
     ataatagcaa agagctgaaa caatcaactg gataacatca tataaaacgg acagtctact      6120
     gtctaacggc tgtgccatgc aacaatgagt ggttaccctt acatacatac atacatacat      6180
//
ID   ORTE-4_AAe  repbase;    DNA;    INV; 5276 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORTE; ORTE-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5276
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1127-1127 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 15 sequences with >95%
CC   identity. This family encodes OTU superfamily cysteine protease
CC   upstream of apurinic-like endonuclease. It is positioned at the
CC   sister lineage of the lineage including RTE and RTEX in
CC   RTclass1.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..4785
FT                 /product="ORTE-4_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MDLNYSLLLFDDNSLARSLIDQIYNYPNNTRQFKDVN
FT                 TFRIEIAKYVDQNRLVFKSIWGNKLETYINLXQTGEKCVEMEILQATAALV
FT                 NSXINVFDNDGDKFIIKPIIPGNEINKELNIYANIGDESVXFSSMIHVQDS
FT                 DITGLSGLVERYTVKHDVKMNRRVLIRNRTENDCIEEAIYHQLFWNDENES
FT                 EIEKIMNDLYQIEIKDKSELGQSKLYWEQVVCTXKRTVILVTESVRNVEIK
FT                 YTKNDAKKGNIILWLNKGKKTHYGSVLALDDNTNALENNTEQTKNVEKRKV
FT                 NIIKTKDNNKXKRENXIYKKEFNSSKLLKIKRMLGDGNCLVWALLDQINKN
FT                 KTNSLTLQDVKDTRNKIANYILHHRDEFEPFLVEGLEEGGFERFVEEIRTL
FT                 GIHLGHEAMVAFGRMHNTSVEIYQEDEPVIRIENDDMGNNNVVRVWYCGDN
FT                 NVKNHYDSVVEILDGKYVGMEGHKHTDNQEQTEKLVVGEETDGSDSRIRME
FT                 KDKSIGDMERNLEKTSHCMQNQNVGKDENNFKFIRIATLNVRGCMKTEKRE
FT                 EINDLLVEQNIDIAALQEVNVLGSIVETKNYKWFVKRDTNNKARGLAFLLR
FT                 KGTGIELGEIRNIGSATISTAVKINKKTKLILVNVHGPNKKASNFFSTLSK
FT                 EIDKEHIKRKLIILGDWNAQIGLEVLEEGDYKHVGRKLGFDQCNENGEEFK
FT                 LFLQLHNLQNLSSKIGSNTEVTWKSGNRRSQIDHVVKALCSDVRIRFIQGF
FT                 WTTISTDHLLMLMDVKLKDTTVKKRTNRDHKILDANALKYDVVRKKYHDEL
FT                 MKFQHDEGLDLDQSYDKLTKIMKISASKALKSSKEPLTPKRKNALNRLNKA
FT                 LSIYRKKPYMLTYKWKVDNRKEEYRRAVNQHEEKVIKSFYQNLNDFDVGVR
FT                 IRKSYAFLKKYAKKKSQKKVQVTTKIWNEILKSSAGPEIALIEEQDFCPIT
FT                 EPPTAEEMRRILQWSCNGKSPGADGIRMEHIKYADEETFQSLVQIWRRIWM
FT                 ENKMPEEMTKSIQVPIPKVGNPKSVDDFRRISLCNAVYKPYAKWLRNRLKQ
FT                 FTGEPELHQAAYTEGRSTDDHVFIAKRVMDEYWNAGKTLFVASVDIKKAFD
FT                 NVDLNKLKDILMDLEVPTHVIDRVLLCVKEDRAMIRWQGQYSESVKRGKGI
FT                 KQGCPLSPFLFNLVIQYILKRVAEKVSNLKLLEVGVFTLPIILAFADDILI
FT                 LTEDQDELEKIIAALEDCLCEVGLEINSKKSQVLIRIPNATKPPPEKIMLN
FT                 GKEYKTCKSLKYLGVTLTSDLNRPATTRQRSINAIKSAKNIVQFCKTFKPS
FT                 WDIGKLIYKTVIAPAIQYGTKVSTLTKRSRLQLAKYEKLILKDIWNNCRVV
FT                 KRKFNVRKEMSGKTINRRVRVARLNYYGHIIRRPNKHPLKSAFKFKFCFKK
FT                 EGRPSFTWKDTLQQDFSRYRDMTNSKWKELATDREKLKKKAEEIYKDSNSE
FT                 ISDGEDSE"
XX
SQ   Sequence 5276 BP; 2031 A; 702 C; 1136 G; 1394 T; 13 other;
     gggtatggtg aggggtatgg tgtggtgaca aaactgtgca tagaaaaaaa aagtggaaaa        60
     cttgaatgat aattcctgta agtatcgaag atggattgct gtatgctgtg tataaatata       120
     tagagaattt gtctcaatgc acaaaagttg aamagtwkma tgaattcata tttcttttta       180
     aagacactag ggtaagttgm ttatttatat tttattccta tactcaatwa cattgggtca       240
     tcwatattca ccatcattat ccattgatga tttcttttta ctgttttctt gatatttagc       300
     gtaagtaaat caatgtatat ataattatga tattcttatc tcattatttt actatcaatt       360
     accacgatgg atttaaatta ctcacttcta ctttttgacg ataattcact agcacgctct       420
     ttaattgatc aaatatacaa ttacccaaat aatactcggc agtttaaaga tgtaaataca       480
     ttcagaatag aaatagcgaa atatgttgat caaaacagat tggttttcaa aagtatttgg       540
     ggtaataaat tggaaacata cattaattta akacaaacag gagagaaatg tgtagagatg       600
     gagatattgc aagcaactgc agctttagtg aatagtawca ttaatgtttt cgataatgat       660
     ggagataaat ttattataaa gccaattata cctggaaacg agattaataa ggaattgaac       720
     atttatgcaa atattggcga tgaaagtgta casttcagta gtatgatcca tgtgcaagat       780
     tcagatataa cggggttatc aggtttggtc gaaagataca ctgtaaaaca tgatgtaaaa       840
     atgaacaggc gagtattgat acgtaacagg acagaaaacg attgtatcga ggaggcaata       900
     tatcatcaat tattttggaa tgatgaaaat gagtcggaaa tcgaaaagat tatgaatgat       960
     ttgtatcaaa ttgaaatcaa agataaaagt gaactagggc aaagtaaatt atattgggag      1020
     caagtagtat gtactttwaa aagaacggta atattagtaa cagaaagtgt gagaaatgtt      1080
     gagataaaat acacgaaaaa tgatgcaaag aaaggcaaca taattctatg gttaaataag      1140
     ggtaaaaaaa cacattatgg tagtgtattg gctttagatg ataatactaa tgctttggag      1200
     aataacacgg aacaaaccaa aaatgtagag aaaagaaagg ttaatatcat caaaacaaag      1260
     gacaataaca agwttaaaag agaaaatktc atatacaaga aagaatttaa ttcaagtaaa      1320
     ttactcaaaa taaagagaat gttaggcgac gggaattgtt tggtatgggc cttacttgat      1380
     caaatcaaca agaataaaac taattcatta acacttcaag acgtaaaaga cactagaaat      1440
     aaaatcgcga attatatttt gcatcacaga gacgaatttg aaccattttt ggtagaaggg      1500
     ctagaggaag gaggttttga acgttttgtg gaggaaatcc gaacactagg cattcactta      1560
     ggccatgaag ccatggttgc ctttggcaga atgcataaca catcggtaga aatctatcag      1620
     gaggatgaac cagttataag aatagaaaat gatgacatgg gtaataataa tgttgtgcga      1680
     gtttggtatt gtggtgacaa taacgttaaa aatcattatg atagtgtggt agagattttg      1740
     gacggaaaat atgtaggaat ggaaggacat aagcatactg ataatcaaga gcaaaccgaa      1800
     aaattggttg taggggaaga aactgatgga agtgacagtc gtattcgaat ggaaaaggac      1860
     aagagcatag gcgatatgga aaggaattta gaaaaaactt ctcattgtat gcaaaatcaa      1920
     aatgtaggaa aagatgagaa caactttaaa ttcattagaa ttgccacact gaatgtgaga      1980
     ggttgcatga agacagaaaa acgagaagaa ataaacgatt tgttggtgga gcaaaacatt      2040
     gatatagcag cattgcaaga ggttaatgtt ttaggtagta tagttgagac aaagaactat      2100
     aaatggtttg taaagaggga cacaaacaac aaagctagag ggctagcgtt tctgctcaga      2160
     aaaggtacgg gtatagaact aggagaaatt aggaacattg gaagcgctac catatcgact      2220
     gctgttaaaa tcaacaagaa aacaaagctt attctagtga atgttcatgg tccaaataaa      2280
     aaagcatcca actttttctc gacgttgagt aaagaaatcg acaaagaaca tataaaaagg      2340
     aaactaatta ttttaggaga ctggaatgct caaatcggac tggaggtgtt agaagaagga      2400
     gattataaac atgtgggcag aaagctagga ttcgaccaat gcaatgaaaa tggcgaggaa      2460
     tttaagctat ttttacaact acacaatctt caaaacttat cttcaaaaat tggaagtaac      2520
     acagaggtta cttggaagag tggtaacagg agaagtcaaa ttgaccatgt tgtcaaagct      2580
     ctttgtagcg atgtaagaat aagatttatt caaggatttt ggactacgat aagtactgat      2640
     catcttctta tgttgatgga tgtaaaattg aaagatacaa cagttaagaa aagaacaaat      2700
     cgagatcata aaatcttaga tgcgaatgct cttaaatatg acgtggtaag gaaaaagtac      2760
     cacgatgagc ttatgaagtt ccagcatgat gaaggattag atttagacca gagttatgac      2820
     aaactaacga aaataatgaa aatatcagcg tcaaaagcat taaaatcgtc caaggaaccg      2880
     ttgacgccca aaaggaaaaa tgcattgaat agattaaaca aagcattgtc aatttacagg      2940
     aaaaagccat acatgttgac ctataaatgg aaagtagata acagaaaaga ggagtatcgg      3000
     agagctgtta atcaacacga agaaaaagtc ataaaaagct tttatcagaa cctaaatgat      3060
     tttgatgtcg gagtgaggat aagaaagtca tatgcgtttc taaagaagta tgcaaagaaa      3120
     aaatcccaaa aaaaggttca agtgactacg aaaatatgga atgaaatttt aaaaagtagt      3180
     gctggaccag aaatcgcgct tattgaagag caagactttt gtccgataac ggaaccgcca      3240
     acagcagagg agatgagacg tatactacag tggtcttgta atgggaagtc accaggtgct      3300
     gacggaataa gaatggagca tataaaatat gcagatgaag aaacgtttca aagtcttgta      3360
     cagatatgga gaagaatttg gatggaaaac aaaatgcctg aagagatgac aaagtcgata      3420
     caggtaccta ttcccaaagt gggcaatccg aaatcagtgg atgatttcag gagaataagc      3480
     ttatgcaatg ctgtgtataa gccttatgca aaatggttgc ggaataggct aaagcagttt      3540
     actggagaac cggaattgca tcaggcggcg tatactgaag gacgttcaac agatgatcac      3600
     gtgtttattg caaaacgagt catggatgag tattggaatg cggggaaaac attgtttgta      3660
     gcatcagttg atattaagaa agccttcgat aatgtagatc taaacaaatt gaaggatatt      3720
     ttaatggatc tggaagtacc gactcatgtg attgatagag ttcttctctg tgtcaaggaa      3780
     gatagagcta tgattagatg gcaagggcag tattcggaat cagttaagcg gggaaaaggt      3840
     ataaaacaag ggtgtccatt atcgcccttt ttgttcaatc tcgtcataca atacatattg      3900
     aagagagtag ctgagaaagt ctcaaaccta aaacttttgg aggttggagt gttcacctta      3960
     ccaattatac tcgcttttgc agacgatatt cttatattga cggaggatca ggatgagttg      4020
     gagaaaatca ttgcagcgtt agaggactgt ttgtgtgaag taggtctaga aataaatagt      4080
     aagaaaagtc aggttcttat aagaataccg aatgccacga aacctccgcc tgaaaaaatt      4140
     atgttgaacg gaaaggaata taagacgtgc aaatcgctta agtacttggg agtcacttta      4200
     actagtgatt taaatcgacc agcaactacc agacaacgat caataaacgc gataaaatcg      4260
     gctaagaaca tagtacaatt ttgcaaaacg ttcaaaccgt catgggatat tgggaaacta      4320
     atatacaaaa ctgttattgc tccagctata caatacggta caaaagtatc aacacttaca      4380
     aaacgtagta gattacaatt agccaaatat gagaaactaa ttttgaaaga tatatggaat      4440
     aactgtagag tagtaaagag aaaattcaat gtgaggaaag agatgagcgg aaaaactatc      4500
     aatagaagag ttagagtggc taggttgaat tactatgggc acattatcag gaggccaaat      4560
     aagcatccac tgaaatctgc ttttaaattt aagttctgtt ttaaaaagga gggaagacct      4620
     agtttcacat ggaaagatac gttacagcaa gatttttcaa gatatcgaga catgacaaat      4680
     agcaagtgga aagaactagc aacggataga gaaaaactta aaaagaaagc agaagaaatt      4740
     tataaggaca gcaatagtga aatttcggat ggagaagata gcgagtagat atgtgatgac      4800
     agggaagcat tgttagaaaa gaagacgata tacaagaata aatatagagt aacatatgta      4860
     cacaaataat tgaatgtgat ttaacttact gccaagaacc aaacagtaag atttgttatg      4920
     atatacttct gaccacggat gatgaatctt aatacgaagc caacgaacat gggtacaaag      4980
     aggtaagata ctttaataac actatatatg atatattact atatattggg tattggggag      5040
     gggtagcata agggagttaa ttgaactgtt gactggatga aagtgcgtgg ggtcgccagc      5100
     cttttgtcat gagaaaacag ccttagtgtt gtcttccaaa ggtcttcaaa gatattaact      5160
     agccctgcta caacaaacca tcaggtagat cattccatcc cggtatgatt ctgcagccat      5220
     aggtaatcct tgcgctgatg gtggctaaat aatcatcatc atcatcatca tcatca          5276
//
ID   ORTE-5_AAe  repbase;    DNA;    INV; 7282 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORTE; ORTE-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-7282
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1128-1128 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >95%
CC   identity. This family encodes OTU superfamily cysteine protease
CC   upstream of apurinic-like endonuclease. It is positioned at the
CC   sister lineage of the lineage including RTE and RTEX in
CC   RTclass1.
XX
FH   Key           Location/Qualifiers
FT   CDS           1594..6273
FT                 /product="ORTE-5_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MNNRMEENVKWVIRDTFVWLEGTALKVQSFKVETDFV
FT                 HMILEQVVVKMGEGIVLREDVFEMXSIILDYIMINQKDFIDHAISRNEVGN
FT                 HEEGRLWFEAYVRAIVSGDQVFEREMLWVIAEICQCPVNIFYETGGKMSFG
FT                 EKYHNERMGSLDFLITTAGIIENVVEVDKRTIHTQSGTGDELLEVLQLKDN
FT                 DDELKKALKWQANQDEDDYKERRDKEIDDLFKEITIQGQDMNRKDLIMRKI
FT                 GETATRMNKEIVIYKMEGSETVLGVTEGKKKRKECKLLLKERYGRMHFDIV
FT                 VTSREIIRNNWINIIEELATDRYSMIPKENTYRFTHPHEGVLTVKQIVGDG
FT                 NCMLRAMLDQIGKKYNKYCMSDYNVRKLRKVIVDYVHQEKEIYEEFMFDYK
FT                 EPTESFETAIERMRENGRWLGHEAMLAATEVLKIAINVVGKDGANHLIGES
FT                 FVNNGTINIFYTGETEQNHYDSIVGRQDGFYMSAQYNTHKSDSIISNNNNE
FT                 KFKEATTIRLDGDDRNNSVQDWYETFMQNKTNEREAQIGNKNSRSTEQEAQ
FT                 VSTADSDKNGKRSGSNEKKDTRNENTNKDIKSNRLNKESKPIEENSKLLRI
FT                 ASWNIKGCRKNDKRNEIDEILTAYNIDVAALQEVNTIGDEINTENFRWKVV
FT                 DNHFNKTRGLALLIRNNSGIEVISVKIVRKGIMWSKIRVNGNVLIIINIHA
FT                 PNKKQSNFLSKLSSLTGGEKDRRHLILVGDFNAQLGWNDLGKEDEKWIGKL
FT                 LGHDSCNENGEVFKMFLHTARLKNISSKIGKGTKVTWRSGNRQSQIDHILG
FT                 PTMTDYRIKFIKGYWTHTNSDHKLITVGLQFQKVVRTKLRSQEPTKVNIEL
FT                 LKDDKIRKKYQEQLISLPTYKDTKIHSTEECYIELITKIKRAANRTVRKSK
FT                 IPSTPRRRKAFERLKAAIKVSKKHPDMQNYKYRLGNRRQEFNQAVKEHKEK
FT                 EISNFFKNLNDFXVGQRIRKTHKYLKGFRKQKQKKRADISAKTWERILKES
FT                 EGPGIDYCLNHDYTPLIQPPTDEEIKDIIKTSCCGKSAGPDRIFMEYLKHA
FT                 DDDTIKTLIEIIQKGFTENKLPSDWMKSTQIPIPKKANASDADHFRRISLC
FT                 NVVYKIYAKWMAMQLTKYAGEPDLYQAAFTNSRSTDDHIFVVRRVMEEHWN
FT                 AGKDLYILALDIKKAFDTVKVQNLREILLSLNVPSRLVDRVIACIKDEMTR
FT                 VLWDNQLSSEIKRGKGIKQGCPISPILFNYIMQDVIRNVAEKIPEMKLMNL
FT                 NCLKIPLLLAFADDIIIIAKSKEELEKLLKELVEQLSIVGLELNYDKCQLL
FT                 LRFPNNKTPKPQDIKLNGRQYKVCDKIRYLGVCLTDTLDRKSTNRLRCVSA
FT                 YKTSRVVIEFCKKFKPSWDIGKLIYKTVLSPAITYGNKAAVLTKKSRIGMA
FT                 NYEKLILRNIFNNCKKPLNLKFNARKLLDGKTVNRRVRVGRINYYGHILRR
FT                 ENNHPIKLAYKMRFETKKEGRPSLTWKDSLNNDLNRYNNIDTEEWKQLAKD
FT                 RDKLKSKAEEIYKETNSEISDGQTSEEEDDRQKPKYKHWKRKLG"
XX
SQ   Sequence 7282 BP; 2862 A; 1025 C; 1588 G; 1803 T; 4 other;
     aagcggaaat ttcgcaaaat cacaaaaaaa caaaatcttc aggtagctag gaggataacc        60
     aaaaaatcat cacgaaccct gatcacggca tggcgggagg gggaagggaa cagcaggaag       120
     gaaaatagag atgcgcagtg ttgtcagatt taaatttaca tcttacaatg aaactcaaaa       180
     ctttagatgt agtattcttt tctttgcgaa ctatagaaag gaagataaag gtgtaaaaga       240
     aatggaaaaa tcgaatagac tcgtaaaaag cgtacgattc taaaaggtaa atacgtatta       300
     aatcacaata ttcacaaacg aaaataactg aggataaaaa gaataaataa tggtagcact       360
     gcatgggtta gtgcaaatga tgatgattat ctagatctga tgatggttca accgctaacg       420
     aaacgagagg aaggggatat atattttttt tctggctatc tctttcgggc gcgtacatca       480
     gtttcattca ctggtaccag acatgctatg ctcaaagtaa tcaatggtga gacgaggtac       540
     ggaggttagg actgcgctag tgtgtgtcac gaggagtatt gtattcaata cagaatgaat       600
     gactaacaca aataaagtcg gggctgaccg gactgacagc ttgacagtga gttgcaaacg       660
     gtaattagtg gatgacacaa acaagttaga cactcacact atcaacctat atgatatagt       720
     tgcaatgatg tgcaatacac acaacgaaaa ccattgatag tgacaagttt ggcgcaatgt       780
     gaagagcggg aaaatcagtt catctttcgt ttggttgctt accgagtaag acgtgtaatg       840
     tgtttaacag aaggaaaccc gcacaaagca tatttccgcg ttcaatttga ttacgttaac       900
     gattgtgcca ttagtaattg aagcggacat atgctttgtg cgatagaaca gttttttaaa       960
     agtgaaaata tcaaaaaatt aggacctgat agcgtcgagg aaaccgcaag cgttttggag      1020
     cattgtactg gtggaacgag cgttgaaaag gaggtgctgt gcaaagtggt tttgaaaagt      1080
     tgagtgaaga agcgagaaag gtgcaatttt ggtcaagcag tggagcggga ggctaagatt      1140
     tattcctaga ggaaggaacc ggaacgggac agaaaagcgg atattctagc gtgattccga      1200
     atagggaaat agtggtcggt tggcaacagt agtgacaatt ttcacacgcg agagagaaga      1260
     agaaattgtg agtgctggtc attcggagag aagagagaag taaggctgag cgagcgtcaa      1320
     agtgtcaaat gtagacgatt ccacggagag agtgatattt gttttacgtg attcagcaaa      1380
     tttattatta ttgtctggta tagcgcattt cgaatactaa ttcattgtct tcaagcatca      1440
     attggttttg gaacatagtt agatctcttt catggtaaaa tatttaacgg ttattgaatg      1500
     aatacgaaga ggtgagctga tgaggtaagt tatatttaat atttaatatc taattktatt      1560
     ttttgaactg caatagttta ttattagata gggatgaaca acaggatgga ggaaaatgta      1620
     aagtgggtaa ttagggatac atttgtttgg ctagagggca cggctttaaa agttcagtcg      1680
     tttaaggtkg agactgattt tgtgcatatg attctagaac aagtagtagt aaaaatgggg      1740
     gagggaatag tactgaggga ggatgttttc gaaatgaamt ctattatatt ggattacatt      1800
     atgatcaacc aaaaagattt cattgatcac gcaataagcc gaaatgaagt gggaaatcac      1860
     gaagagggcc ggttgtggtt tgaggcatat gtacgggcaa tcgtttcggg tgatcaagta      1920
     tttgaaagag agatgttgtg ggtgattgcg gaaatttgtc agtgtccagt gaacattttc      1980
     tatgaaactg gtggtaaaat gtccttcggc gagaagtacc acaatgaacg aatgggatct      2040
     ttggacttct tgatcacaac agctggaatc atcgagaacg tggtagaagt ggacaagcgg      2100
     acaatacata ctcaatccgg tacaggagac gaattattgg aagtgttaca attaaaggat      2160
     aatgatgatg aactgaagaa ggcgcttaaa tggcaggcta atcaggatga ggacgattat      2220
     aaggaaaggc gtgacaagga aatagatgat ttattcaaag aaatcacaat tcaaggacag      2280
     gatatgaata gaaaagacct aattatgaga aagataggag agacagccac taggatgaat      2340
     aaagagattg taatatacaa aatggaagga agtgaaacag tgctaggtgt aacagaaggg      2400
     aaaaagaaga ggaaagaatg taaactgctg ctaaaggaac ggtacgggcg aatgcacttt      2460
     gatatagtgg tgacaagcag agagataata agaaataatt ggatcaatat aatagaggag      2520
     cttgcaacag acagatattc gatgatacca aaagagaata catacagatt cacgcaccca      2580
     catgaaggag ttttaactgt gaaacagata gtaggagatg gaaactgcat gctaagggca      2640
     atgttagacc aaataggaaa gaagtacaac aaatattgca tgtccgatta taacgtcaga      2700
     aaattacgaa aagtaattgt agattatgta catcaggaga aagagatata tgaggaattc      2760
     atgtttgact ataaagagcc aaccgaaagt tttgagacag cgatagaaag gatgagggag      2820
     aatggcaggt ggctaggaca cgaagcgatg ctggcagcga cagaagtctt gaaaatagcg      2880
     attaatgtag taggaaagga tggagcaaat cacctaattg gagaatcttt tgtgaataac      2940
     ggtacaatta acatattcta tacgggagaa acagagcaga atcattatga tagcatagtt      3000
     ggaaggcaag atggctttta catgagtgca caatataaca cccataaatc agatagcata      3060
     atatccaaca acaataatga aaaattcaag gaagcaacaa ctatacgatt agatggtgat      3120
     gatagaaata acagtgtaca ggactggtat gaaacattta tgcaaaacaa aacgaatgaa      3180
     agggaagctc aaataggcaa caaaaatagt cgtagcacag aacaagaagc gcaggtatcg      3240
     acagctgata gtgataaaaa tggaaaaaga tcaggatcaa atgaaaagaa agatacaagg      3300
     aatgaaaaca caaataaaga catcaaaagc aataggctaa acaaagaaag taaaccaata      3360
     gaggaaaaca gtaaattgtt aaggatagcc agctggaata taaagggatg cagaaaaaac      3420
     gacaaaagga atgaaataga cgaaattctc acagcctata acatcgatgt agcagctcta      3480
     caggaggtca atactatagg agatgaaatt aacactgaga actttagatg gaaggttgtt      3540
     gataatcatt tcaataagac gagagggctt gcgcttttga tcaggaacaa tagtggaata      3600
     gaagtaataa gtgtgaaaat agtcaggaaa ggaataatgt ggagtaaaat aagggtgaat      3660
     ggcaacgttc ttattattat caacatacat gcaccgaaca aaaaacaaag taatttctta      3720
     agtaaactta gcagtttaac aggaggagag aaagatcgca gacatctgat actggtagga      3780
     gattttaatg ctcaactagg atggaacgac ttaggaaaag aggatgaaaa atggataggg      3840
     aaactattag ggcatgatag ttgtaatgaa aatggagaag tttttaaaat gtttttacat      3900
     acagcaaggc ttaagaatat atcgtcaaag attgggaaag gaaccaaggt gacatggaga      3960
     agtggaaata ggcaaagcca gattgatcat attttaggtc ctactatgac tgattacaga      4020
     ataaagttca ttaaaggtta ttggactcat acaaattcag atcataagtt aataactgta      4080
     gggttgcagt ttcagaaagt tgttagaaca aaattaagaa gtcaagaacc aacaaaagta      4140
     aatattgagt tactaaaaga cgataagatc agaaagaaat atcaggaaca attgatatct      4200
     ctaccaacat acaaagatac aaaaatacat tcaactgaag agtgctacat agaactaatc      4260
     acaaaaataa aacgagcagc aaatagaact gtcagaaaat ccaaaatacc atctacgccg      4320
     agaagaagga aggcattcga acgtctgaag gcagccataa aagtttcgaa gaaacatcca      4380
     gacatgcaaa attacaaata tcgactagga aacaggagac aagaattcaa tcaagcagta      4440
     aaagaacaca aagagaaaga aatcagcaac tttttcaaaa acttgaacga cttcgawgta      4500
     ggacagcgaa ttagaaaaac acataaatac ttgaaaggat tcaggaaaca gaaacagaag      4560
     aaaagagcag atattagcgc aaagacttgg gaaaggattt taaaagagag tgagggacca      4620
     gggatagatt attgcttaaa tcatgattac actccactta tacaacctcc aactgatgaa      4680
     gaaattaaag acattattaa aacatcatgc tgcggcaaat cagcggggcc ggatcgcata      4740
     ttcatggaat acttaaaaca tgcagatgat gatacgataa aaacacttat tgaaattatt      4800
     caaaaaggat tcacggaaaa taaactaccg agcgattgga tgaagtcgac gcaaataccg      4860
     attcccaaaa aagcaaatgc atcagatgca gatcacttca gaaggatttc attatgtaac      4920
     gtggtatata aaatttacgc aaagtggatg gcaatgcaac ttacaaaata tgcaggagaa      4980
     ccggatttgt accaagcagc ctttactaat agcaggtcga cggacgatca tatatttgtc      5040
     gttagaagag tgatggaaga acattggaat gcaggcaaag atctgtatat attagcattg      5100
     gatataaaaa aagcatttga tacagtaaaa gttcagaatc ttagagaaat attgttaagt      5160
     ctaaatgtac cttcgagatt ggtagataga gtcattgctt gtataaaaga tgaaatgact      5220
     agagttttgt gggataacca attatcaagc gaaataaaaa gaggaaaagg cataaagcaa      5280
     ggatgtccta tatcacctat actattcaat tacataatgc aagatgttat tcggaatgta      5340
     gcagagaaaa taccagaaat gaaattaatg aaccttaatt gtttgaaaat acccttgctt      5400
     ttagcctttg cagatgatat aataataatc gcgaaaagta aagaagaact agaaaagcta      5460
     ttaaaagaat tagtcgaaca gttgtcaatt gtgggattag agctaaatta tgacaaatgt      5520
     caactgctgc taagattccc aaataataaa acacccaaac cacaagatat aaaactaaat      5580
     ggaagacaat ataaggtatg tgacaaaata aggtacttag gagtatgtct cacagacact      5640
     ctagatagaa agtcaaccaa tagattaaga tgtgtgagtg catataaaac tagtagagta      5700
     gtaatcgaat tctgtaaaaa atttaaaccc tcatgggata taggcaaact aatatataaa      5760
     acagtattat ctcctgctat aacatatgga aataaggcag cagtgttaac caagaaaagc      5820
     agaataggaa tggcaaatta tgagaaactt attttaagga acattttcaa taattgtaag      5880
     aagccattga atctgaaatt caatgcacga aaactattag atgggaaaac tgttaacaga      5940
     agagtaagag tagggaggat aaactattat ggtcatattt taagaagaga aaataatcat      6000
     ccaataaaac ttgcttacaa aatgagattc gaaacgaaga aggaaggcag accaagttta      6060
     acatggaagg attcacttaa taatgatttg aatagataca ataacataga tacagaagaa      6120
     tggaaacaat tagctaaaga tagagataag cttaaaagta aagctgaaga aatctacaag      6180
     gaaacaaata gtgaaatatc agacggacag acttcagaag aagaagacga tcgacaaaag      6240
     cctaaatata aacactggaa gaggaaatta ggatagcttg agtttagtca aaagttagct      6300
     gtaaaaaaaa aatggatcga ttaaactaac tatgcgtctt taatagggct aagaaaaata      6360
     tcataaagaa cacagtatat gttttatgaa ataatttaag gaaaatttgg caatgacact      6420
     caaaatgtta gacgtttcat tgcaaatcaa aaagtttaat cccaattaaa tatcatttta      6480
     cagatgtctt catttttaaa aaataataga tagaactttt tccgattaaa tatagccaac      6540
     agaaatgtta cactcatcag acacctctca acaccgattt ttgttttatt gattcaaaca      6600
     agtacataaa aaaaaataat taaattgttt aatcgagtaa gaatgacaat gaattagtaa      6660
     gcgctaaata ccagaacgaa actgaatgtt tatatttact ctgatggaaa atgtctatgg      6720
     atataaatgt cgtaaaccac cggaataaat aatataacaa aagatgaacc attgccgtta      6780
     ctaaacaata aacattacca gtacaataac cataaccatt cgtttcagca tatatatcca      6840
     acagtaaggt aagcgattta aacaatttaa tgtattgcct attgaaactg actataatga      6900
     aaataataac aaccaacagg gcacccgatt aaagcgagat ggataggaag agtgaaactg      6960
     tcaacttcct atcgctaaca tttcgtggaa agagggcggg ctcttctccc catctattgg      7020
     gtctttctgg caagcaaggg cttgattgta cgactttttg tgtgaactta cttctggaag      7080
     gagattctct gtcccttgcg ggtttcgcgt aagtgtctat gcttacgggt ccgccattcg      7140
     cttttggtcc ttcagacagg agtatgattg aatataaata gtcgtacagt cttgatcaaa      7200
     ttgtttcgtc agcaaagacc attgctaccg gtggatacct tgctacaata gatggtagtc      7260
     tatatcatca tcatcatcat ca                                               7282
//
ID   ORTE-6_AAe  repbase;    DNA;    INV; 5968 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-LTR retrotransposon family encoding cysteine protease from
DE   Aedes aegypti.
XX
KW   Non-LTR Retrotransposon; Transposable Element; RTE_Ele6; ORTE;
KW   ORTE-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5968
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5968
RA   Kojima K.K. and Jurka J.;
RT   "A lineage of non-LTR retrotransposons encoding an OTU cysteine
RT   protease from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as RTE_Ele6.
CC   [2] Consensus update. This consensus is generated from 24
CC   sequences with >92% identity, and ~95% identical to the original
CC   sequence in [1]. This family encodes OTU superfamily cysteine
CC   protease upstream of apurinic-like endonuclease. It is positioned
CC   at the sister lineage of the lineage including RTE and RTEX in
CC   RTclass1. Renamed.
XX
FH   Key           Location/Qualifiers
FT   CDS           247..4797
FT                 /product="ORTE-6_AAe_1p"
FT                 /note="OTU cysteine protease, endonuclease and
FT                 reverse transcriptase."
FT                 /translation="MIKVGGGEVLNENVNELKQIIFXYIKLNWENFVYELI
FT                 LSXRIXISKEETLMYEQYEWSIKGGKQVFGYEVLWAVAEIFECTVNIFFEA
FT                 GGKIIYGSKYRENHISLDFVINNEGKIENIIDTDEHMRFVYTSNKQGQNVR
FT                 SEVEREIGKLKEXQGSRAYTFEIATRDEILEVKQIGHDDVSLMRALEVQLN
FT                 AEQDGXSEKVREELDELFRGSKIQGEDFNQVENILARLGVVASNLNKEIII
FT                 YREKKXEIVLGVTERKSKMKECKLLLTEREGKIHIDIISKCSEVTRIDWNN
FT                 VVEDLALDTXVRKPREEIYQFEHPQKEGKMEVKIIQGDGNCMLRSLLDQLG
FT                 RRYGRYLLSXHNVYKLRKFMVDYIQQAREQFEGFMFDYKQPEEDFEIGISN
FT                 MRKNKTWLGHEALLALTEILKIAIIVYGKDGAINTIGENYSSNGSLQIFYT
FT                 GVDVQNHYDSIITKNDEIAGNTRHTQRFHNENDKSYDLNDVAVKIDQMAEM
FT                 REQVNPNHGTDNSEKEQASNRRKTENSHLPTSQVTNANNTNNTDVKGHNTR
FT                 KVSNKFIRIASWNVKGCRSKEKREEIDETLTAYNVDIAALQEVNTLGDEVN
FT                 TKNYVWKVADNHVNKSRGLAIVIRNNTNITIQNMKQVRQGILWCKIKAKDN
FT                 VFIIINIHAPNVKQAAFLSKLNEITANEKDRKHLLVVGDFNAQLGINDMNQ
FT                 EDEKWIGKMIGHDKCNDNGETFKIFLHTAKLKNVSSKIGMGTEITWRSGSR
FT                 CSQIDHILSPTMTDFKIKYIRGNWTHLNTDHKLITIGIKFEKIVRNTNERN
FT                 EPTKINLELLKDNKIKEEYQEQLKLNKSQKEIEENTIEECYKELSSRMKRA
FT                 ANKTIRSSTIPSTPKRRKAFDRLKDAIRISKKHPDMINYKYKLKNRRQEFT
FT                 QAVKDHKEKEIKHFFKNLNDFDVGQRIRKTHNYLKRYVKQKQKRIVNISTR
FT                 VWDQMLRESEGPTIEFCDTHDYTPMIQPPTSEEIMDIIRNSSNGKAAGPDL
FT                 IFTEYIKNADKETQDYLVKVIQKAYIENIYPSDWLKSTQIPIPKKVKATEA
FT                 EHFRRISLCSVVYKVYAKWIANQITKYAGQPDLYQAAFTNNRSTDDHIFVT
FT                 RRVMEENWNAGKDLYILALDIRKAFDTIKVHNIKDILLGLNVPTTLVDRVI
FT                 ACMKDEMTRVLWNGQFSEEIKRGKGIKQGCPLSPILFNYIMQDVIRKVASK
FT                 IPELKLMDVNSLIIPLLLAFADDLLIIADSKEQLEKIVKELVKQLEEVGLE
FT                 LNYDKCQLLLRFPNYKGQMPNEIMLNGRPYKVCDSIKYLGVCLTATLDRKA
FT                 TNRQRCVNAYRTGRSVIEFCKSFKPSWELGKLIYKTVLAPAITYGTKVAVL
FT                 TKKSRIGMANYEKLILRSIYNHCRRPQNIRFNARKLLDGKTINRRVRVGRI
FT                 SYYGHILRREKNHPIRLAYRLNFKKKKEGRPSFTWKDSLEKDLNRYSEVDR
FT                 EEWKQLAEDRDKLKKKAEEIYKETFSEISEGESSEEEGRSKKYKHWKRKMK
FT                 R"
XX
SQ   Sequence 5968 BP; 2408 A; 822 C; 1265 G; 1462 T; 11 other;
     tgattccctt gtgaaaatat tacatagatt tgctgattct ataatttcct tggtggtgta        60
     tataaggtaa gtcatattgc ttttgaacat aacattatta taaaaawaaa aaaaaacaat       120
     gaatcgacaa gtaccaatac agaagtggta awtcgggaga tatgtgtgtg gccaaaaggt       180
     ccaatactaa gaattcaatc gtttgtggaa gaaattgatt tgaccaaaac tgtattggaa       240
     caagtgatga tcaaagtggg gggtggagaa gttctgaatg agaacgtaaa cgaattaaag       300
     caaatcatat ttgawtatat caagttaaac tgggaaaatt ttgtgtatga gttgattcta       360
     tcgaakagga ttaawatctc aaaagaggaa acattaatgt atgaacaata cgagtggtca       420
     ataaaaggtg gtaaacaggt ttttggttat gaagtattat gggcagtggc agaaattttc       480
     gagtgtaccg taaacatttt tttcgaagca ggtggaaaaa ttatctacgg ttcaaaatac       540
     agggagaatc atatttcgtt ggattttgta atcaataatg aagggaaaat tgaaaacatt       600
     atcgatacag atgaacatat gagatttgta tacaccagta ataaacaggg acagaatgta       660
     agaagcgaag tagagcgaga gatcggaaaa ttaaaagaga wgcagggaag tagagcatat       720
     acatttgaaa ttgcaacaag agatgaaata ttggaagtaa agcagattgg gcatgatgat       780
     gtgagtctta tgagagcttt agaagtacaa ctcaacgcag agcaggatgg ggwaagtgag       840
     aaggtaagag aagagctaga tgagttattt cgaggaagca agatacaggg agaggatttc       900
     aaccaagtag aaaatatact tgctagatta ggggtagttg cttctaacct caataaggag       960
     atcatcatat atagggagaa gaaaawggaa attgttttgg gagtcactga aaggaaatca      1020
     aaaatgaaag aatgcaagct attacttacg gaaagagaag gtaaaataca tatagacatc      1080
     attagtaagt gctcggaagt gactagaata gactggaata atgtagttga ggatttagca      1140
     ttagatacaw acgtaagaaa accaagagaa gaaatatacc aatttgaaca tccgcagaaa      1200
     gaaggaaaaa tggaagtgaa gataatccaa ggggatggaa attgtatgct aagatcgtta      1260
     ttagatcaat taggaaggag gtacggcaga tatctattat cggwtcataa tgtttataaa      1320
     ctacggaagt tcatggtaga ctacatacag caggctaggg aacagtttga gggatttatg      1380
     tttgattaca aacaaccaga ggaagacttt gagataggga tatcaaatat gagaaaaaat      1440
     aaaacatggc tgggacacga agcactatta gcattgactg aaatattgaa aatagcaata      1500
     atagtttatg gaaaggatgg agcgataaac actatcggag aaaattattc atctaacggt      1560
     agcctacaga tcttttacac aggagtagat gtacagaatc attatgatag cataataact      1620
     aaaaatgatg aaatagccgg aaataccaga catacacaaa gatttcataa tgaaaatgat      1680
     aaaagctacg atttgaatga tgtagcagta aagatcgatc agatggcaga aatgagggag      1740
     caggtcaatc ctaatcatgg aacagacaac tcagagaagg aacaagcttc gaaccgaaga      1800
     aaaactgaaa acagtcatct accaacaagt caagttacta atgcaaataa tactaataat      1860
     acagacgtta aaggacataa tacaaggaaa gtaagcaata agtttattag gattgctagt      1920
     tggaatgtca aaggttgcag gagtaaggaa aaacgggaag aaattgatga aacactcaca      1980
     gcttacaatg tagacatagc agcgttacag gaagtaaaca cgctaggcga tgaagtcaac      2040
     acaaaaaatt atgtatggaa agttgcagac aatcacgtaa acaagtcaag aggattggca      2100
     atagtaatca gaaacaatac aaacattaca attcaaaata tgaaacaggt tagacaagga      2160
     atactgtggt gcaaaatcaa agcaaaggat aacgttttca ttattattaa tattcatgca      2220
     cctaatgtga agcaagcagc gtttttgagt aagctaaatg aaataacagc aaacgaaaaa      2280
     gaccgtaaac atcttttagt agtaggtgat ttcaacgctc agttagggat caatgacatg      2340
     aaccaagaag acgaaaaatg gataggtaaa atgataggac atgataaatg caatgataac      2400
     ggagaaacgt tcaaaatatt tcttcacacg gcaaaactaa aaaatgtgtc atcaaaaatt      2460
     ggcatgggca ctgaaatcac atggagaagt ggcagtagat gtagtcagat agatcatatt      2520
     ctaagtccaa cgatgaccga tttcaaaata aaatacatca ggggaaattg gacacacttg      2580
     aatactgatc acaaattaat aacgatagga ataaaatttg agaagatagt gagaaataca      2640
     aatgaaagaa atgagccaac taaaataaac ctagagctac ttaaggataa taaaataaaa      2700
     gaggagtatc aagagcaatt aaaactcaac aaaagtcaaa aagaaattga ggaaaataca      2760
     attgaggaat gttacaaaga actatcgagc agaatgaaaa gagcagctaa caaaacaata      2820
     agatcgtcca cgattccgtc tacccctaaa agaagaaaag catttgatag attaaaagat      2880
     gcaataagaa tttctaaaaa acacccagat atgataaact ataaatataa gttaaaaaac      2940
     aggagacaag agttcactca agcagtaaag gaccataaag aaaaagaaat taaacatttc      3000
     tttaaaaacc taaatgattt tgatgtagga caacgaatca ggaaaacaca taattatttg      3060
     aaaagatacg taaaacaaaa acaaaagaga atagttaata taagtacgag ggtatgggat      3120
     caaatgctta gagagagtga ggggccaaca atagagttct gtgatacgca tgattacaca      3180
     ccaatgatac aacctccaac atccgaagaa attatggata ttatcagaaa ttcaagcaat      3240
     ggaaaagcag cagggccaga tcttattttt acggaatata ttaaaaatgc agacaaggaa      3300
     acccaggatt accttgtgaa agttatacaa aaagcataca tagaaaacat ttatccgagt      3360
     gattggttaa aatcaactca aataccaatt ccaaaaaaag taaaggcaac agaggcagaa      3420
     cattttagaa gaatctcttt atgtagcgta gtttataaag tatatgcaaa gtggatagct      3480
     aatcaaataa ctaaatatgc agggcaacca gatttatatc aagcagcatt cacaaacaat      3540
     cgatctacag atgaccacat atttgtaact agaagggtaa tggaggaaaa ttggaatgcc      3600
     ggaaaagatt tatatatatt agcactagat attagaaaag cttttgacac aattaaggta      3660
     cacaatatta aagatatact gctaggtttg aatgtgccaa cgacgttagt agatagagta      3720
     atagcttgta tgaaagacga aatgacaaga gtgttatgga atggtcaatt ttctgaggag      3780
     ataaaaagag gcaagggcat aaagcaagga tgtccattgt ctccaatttt attcaattat      3840
     attatgcagg atgttataag aaaagtagcc tcaaaaattc cagaattgaa attgatggat      3900
     gtgaatagcc tcataatacc cttgctttta gcctttgccg atgacttgct aattattgca      3960
     gatagtaagg aacaattgga aaaaatagtt aaagaattag tgaaacagct agaagaggta      4020
     ggactggaat taaactatga caagtgtcaa ctattattaa ggtttccgaa ttacaaagga      4080
     caaatgccta acgaaattat gttaaacggt aggccttata aagtgtgtga tagcataaaa      4140
     tatttaggag tgtgtctaac ggcaacttta gatcgaaaag caacaaatag gcagagatgc      4200
     gtaaacgcat atagaacagg tagatcagtt atagagtttt gtaagagttt taaaccctcg      4260
     tgggaattag ggaagttaat ttataaaaca gttttagccc ctgcaataac ttacggaaca      4320
     aaagtcgcgg tgttgacgaa aaaaagcaga ataggaatgg caaactatga aaaacttatt      4380
     cttaggagta tatataatca ttgtaggaga ccacaaaaca taagatttaa tgcgcgaaaa      4440
     ctgttagatg gaaaaactat aaatagaaga gtcagagtag gaagaattag ttactacgga      4500
     catatactta gaagagagaa aaatcacccc atcagattag catatagact aaacttcaaa      4560
     aagaaaaaag aaggaagacc aagtttcacg tggaaagact ccttagaaaa agatctgaac      4620
     agatatagcg aggtagatag agaagaatgg aaacaattgg ctgaagatag agataaactg      4680
     aagaaaaaag cagaagaaat atataaagaa actttcagtg aaatttcaga aggcgaatca      4740
     tcagaagaag aaggtagaag taaaaagtac aagcattgga agagaaaaat gaagagatga      4800
     agaaattagt gatgagatta gatagataat tgaaaggtaa aaatgagtag gaaagaaaca      4860
     tacaattcga tagtactgat tcaaactaac gacctgtgta ccacctttaa taataaatag      4920
     ctgtaacggg acacgtaatc gaataaaatg tttaggttaa ggtgaagatg agtcgaagcc      4980
     ggggttcaga tgttcaaggg cacgggtctg gagagccggg catccgtttg agctggggac      5040
     ctgatcgatt ggtcaccacc agctggtgac caatcgatta ggttttcagc ttgaacgggt      5100
     gcttggttca ccagatccgt gctcttgagg atttgaggtt tggctttgat tcatcttcac      5160
     cttaattaaa gcaaatttat tagtagcagt aattgcagtg gtaaatttca atataatcaa      5220
     tgtagccatg gagggtcatg ttcagcttag ttaatgtcag ataaatgtta cccacaaaca      5280
     aaagcaatat gacttacaag taaaacgatt agaaaaaaaa aataataata ataaaacggc      5340
     caaaataacg tcggttttac gcaaaaatat actattaatt gataawcacg gcaacacgtc      5400
     aatgaactac aaaggataaa tagggattaa atgtatagag atacattaat aggaatagct      5460
     actgtagaac acaataaagg gtgaatactg ataaaaaaaa tcgtacttaa atacacacaa      5520
     ataaaggtaa gatgaattgt aaccgattgt atattacata aacatactac tataaataac      5580
     ggggtacggg agggaccaac agggcacccg attgaagcga tctggacagg gagcctggga      5640
     ctgcctcctc cctgttgtta acatttcgtg gattgagggc gggctcttcg accccatcta      5700
     ttgggagtat tctgtcaatc gagggcttga ttttacagtt gttcgtgaaa actttcttct      5760
     ggaaggagat tcttttcccc tgccgcgggt ttcgtgcaag tgtctatgct tgtgggtccg      5820
     cacatccatt tttggccctt catacagaag actgactgct cacaaacaaa agtacaatct      5880
     tgatcaaatc gcttttcaga ttattccagt gctataggca gatgccttgc tacaatagat      5940
     ggtagaacca tatcatcatc atcatcat                                         5968
//
ID   OSVALDO_I   repbase;    DNA;    INV; 6653 BP.
XX
AC   AJ133521;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   OSVALDO_I is an internal portion of OSVALDO, a gypsy-like
DE   endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; OSVALDO; OSVALDO_I; OSVALDO_LTR;
KW   endogenous retrovirus; env; gag; integrase; protease;
KW   reverse transcriptase; Ribonuclease H; internal portion.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-6653
RA   Pantazidis A., Labrador M. and Fontdevila A.;
RT   "The retrotransposon Osvaldo from Drosophila buzzatii displays
RT   all structural features of a functional retrovirus.";
RL   Mol. Biol. Evol 16(7), 909-921 (1999).
XX
RN   [2]
RP   1-6653
RA   Labrador M.;
RT   "OSVALDO_I.";
RL   Direct Submission to Genbank (05-MAR-1999)Labrador M., Department
RL   of Biology, Johns Hopkins University, 3400 N Charles Street, MD,
RL   21218, USA.
XX
DR   GenBank; AJ133521; Positions    1217    7869.
XX
SQ   Sequence 6653 BP; 1798 A; 1678 C; 2054 G; 1123 T; 0 other;
     actggcgccc aacgtggggc cctgcgataa gagaataagc aataattgtg aacaatggtg        60
     cgagcttggg tgtataatct caaaaaggac gatgtgctac gatatggtga cgaattcgga       120
     gtcacgctgt cgggcacatt ggacgtgatg cggagacagt tcggtgagtg ggtggagacg       180
     aatgagggaa gaattccata ttctctcacc gtcgccgagc tggcacgact gcatggacgc       240
     cgcccttcga acagcgagga tgtgccaacg gtcatcgtgg gaaacgacca gtacgaggaa       300
     gatccaaatg cggcgcggca atctctgcca tccaccagcg ctgctgcgcg gctgcagcag       360
     acagagcaag gagcatggag agccacgtct acaccgcagc ctgaaataag gacgcgaggg       420
     ccaagcagct cagagcagga gtatccaaag gtggccaaac acgtgaggga gtggaacttc       480
     cggttcgatg gcacctcaaa gcctttggag ttcctggagc aggtggagtg gtcagcagac       540
     acctatggcc tggatctgga tctgatccca agagcgatgc cagagctact gaaaggcatg       600
     gctctaaagt ggtacgtggc caataatagg cactggagga cgtggggaac cttcgtgaga       660
     agcttccagg agttcttctt cgccgaagac tacttggagg atctcaaaga cgaggtcaag       720
     cgtcgaaagc agatggtgga cgagccattc aagatctaca tggtggagat gcagactctc       780
     atgcggccgc tgcgttatgg gccagatcac gagatgaagt tgatttacaa caacagcatc       840
     cctgatctgc gcgcctacgc tcggccgtat cagttccaga gtctgatgga gctgatgaag       900
     ctggccgacg agttcgagga actggaacga gaccgagaga ggttgcgtcg gctgcagcgg       960
     ccagcacgaa cgcgtctaat ggccatggag gaggatgatg gccacgaaga ggagatgctg      1020
     cggagaggag ccctggagga gagtcctcgt cctgcaccaa ggactggtgc cacgggacaa      1080
     aggacacaca tcccaaatcc atccagagcg tgccgggtgt gtggccaaga aggacaccga      1140
     gctgtcaggt gccgcaacag ggcactggac ttctgctggc aatgtggacg cataggcgtg      1200
     cgcaccgtgg cctgttgcca atcgggaaac gaccagcggt acccgcagtc caggggggag      1260
     cgggagcaat gccaaacagc cccaagacat taattggcag cctgcacgac gaaggccacc      1320
     aactgacggc gattgtggcc attggggccg agcagcagaa agccacgatc gatactggag      1380
     cctcgagcag ctttattagc gaaaggctcg ccaaaaggct ccatggaggg ggcgtggtgc      1440
     gcgccacaag gcggcgcata cgcctggcga acggcagctg cagcgaggtg aactcgcaac      1500
     tggacctaaa gattagactg ggcagtcggc aaatggaagt tccattgctg gtgctgccag      1560
     gcgtaatcga cgatctggtg ctgggctgcg atttcttggc cggcatggga acaccttgga      1620
     atgtggcggc ttggcgctcg actatcgagc caagaaatcc acagaggagt ggacgacggg      1680
     aggcaaagtt gtcagtggca attgccagtg gagaaatagg ccacgaaacg ccactggacg      1740
     cgactcaggt ggaccagaag ctgatccatg cggatccgga agtggatgcc tttctgaggc      1800
     acgaactgga gaaattccaa cacgtgaaag gcaccaccaa aatcacggag catcggatca      1860
     ccatgcagga cacgcggcca attaaacagc gctacttccc caaaaatccg aagatgcagg      1920
     cggagatcaa taaacaggtg gatgagctgc tcgtaaaagg ctgcatagag ccttccaaga      1980
     gcccacacac gcgcacctat agtaatggtc aaggaagaaa gaatggcaaa tggcggctgt      2040
     gcgtggactt taggcagctg aacagcagat ccatcaagga tgcataccct ctgcctcgtg      2100
     tgcatcacat tttggatcag ctgcgagagg cgcgctatat cacgagtctg gatctaaagg      2160
     atggatattg gcaaataccc atggagaaat ccagtcgacc attgacagcg ttcacagtcc      2220
     cagggaaagg cctgttccag tggaaggtga tgccgtttgg cctccactcg gcacctgcaa      2280
     cattccagcg agctctagac caggtcatcg gccctgacat gatgccacac gcttttgcgt      2340
     acctggacga catcatcgtc ataggcagga cacgtcagga gcacatggat aacctgagag      2400
     aggtgttccg gcgactgcgg gcagccaatt tgaggatcaa catcgacaag tgcgatttct      2460
     tcaaaaagga gctgaagtac ctgggtcata aggtcacaga gaatggcatc cgcactgacc      2520
     cagagaaagt agccgcgatt gcccagttga agccacccac taatgtcaaa gagctgagac      2580
     aatatgtggg agtggcttca tggtatcgtc gctatgtccc agacttcgct tccacagtgc      2640
     atccgctcaa tgcactactc aaaaagggcg tcaaatggga gtggacagag gagcatcaaa      2700
     gggcgttcga gactgtgaag gccaagctga cggaatcacc tgtcttggca tgccctgatt      2760
     tctcgaagcc attttgcttg caaacggatg caagtaacta tggactggga gcaatcctga      2820
     cgcaaacatc ggaggaaggg gagcgcgtca tttcgtatgc cagccggaca cttaacagtg      2880
     ctgagagaaa ctactcagcc actgaaaagg agtgtctggc cataatctgg ggcatacgca      2940
     aactcaggcc atacctggaa ggctatcact tcatagtgat cacggaccat atggcgctga      3000
     agtggctcaa ctccatcgag agcccttcag gaaggattgc cagatgggcg ctggagcttc      3060
     agcaatacga cttcgaggtt cgctaccgga aaggcaaaca aaatgtcgta gctgatgcgc      3120
     tgtcacggca gccgctggag gaggacgcat gctgcttggc caagagcaga gagacgccag      3180
     atgggacagc atgtcgctgg ctacaaaggc tgcgccagga tatgcggaaa gccccgcaga      3240
     agttcgcaga ctatagagag gaggctggaa acatataccg gcacattccg caccaagccg      3300
     gccacgagga tgtggctgca tggaagctgt gcgtgtcaac agataggcgc aaacaggtgt      3360
     tgaaggagaa ccacgacgct gtcactgctg gccaccttgg gagcagaaaa accattgctc      3420
     gggtggcagc gaggtattac tggccaggca tgtaccggga tgtgcgcaac tacgtgcagc      3480
     ggtgcgaggt gtgccagcgc tacaagccca gtcagctgca ggcagctggt caaatgctga      3540
     cacaagtgcc cgaggagcca tgggcaaccg tatgcgctga tttcgtgggt ccgttaccga      3600
     ggtcgaagca tgggaatacg atgctactgg tattcatcga tcgattctcg aagtggacgg      3660
     agatggtgcc tttgaggagc gcgaacacgg cggcgctgca aaaggcgttc cgcgagagaa      3720
     tcttggctag atttggcgca ccaaaggtac tcataacgga caatggcacc caattcacca      3780
     gtcgagcctt caagaacttt ttggacgagc tgggagtgcg gcaccagttg acggcgccat      3840
     acacaccgca agaaaatccg accgagaggg ccaacaggac agtgaagacg atgatcgcgc      3900
     aatttgctgg cagcgatcaa aggtgctggg atgaggctct gccagagttg acgctggcag      3960
     tcaacagcag cgtgtcggca tctaccgggt acacggcagc attcatcacg caagggcgag      4020
     agccgaggct gcccaaaacc atgtttgacg cacaaactct tgggacgggc caggaggcac      4080
     agagtcccat agagagggca gccaagatgc gagaagtctt ggagattgtg cgtcgaaacc      4140
     tggagagagc tgcccaggac caggcgcgca ttacaatctg cggcggaggc agtggaagcc      4200
     ggctattggg gacaaagtgt gggcgaagga acgccacttg tccaatgccg cggacggatt      4260
     tgcagcgaag ctggcaccgc gatacggagg gccatatacg gtggtcaagt ttgtatcgcc      4320
     ggtcatctgc cggcatcagc tcggatgccg aaaagcgaac ccggaccgcg catgtggctg      4380
     acttgaagcc atggagaggc gagacgggtg agtcgcaaag cggggcagag caagccgcct      4440
     agtaaaattt tcaaaaaaaa aaaaaaaaaa aagagtgaat gcacatcgcg atgtgcattg      4500
     cttttaagac acctaaaaac gaagaaaaat ttggaatttt acgagaagca aacagttgga      4560
     actgttaact gggtgacgcg caacaacaaa tttttaaata acgcgcgcac tgcagtggaa      4620
     gcgaacagtt aaaactgtta gctaagtgac gcgcaacaac aaaattttaa attgccgcgc      4680
     gcactgttac gtacgtaaca acaacacaca caacaaacaa gcgtacgaaa caacaacacg      4740
     ctcagctgac aagagttgga cgcgcacgca taaacataaa caacaacaag tatgcaagca      4800
     gcgcacaaca aataacacac acagctgagt acgaacgagc gtgtgcaaga gccggagaag      4860
     gtcaagggcc tcgcgagagc gagagagcgc agcgagcatc ggttggctcg gcgagagcgc      4920
     gagcgagtgc agcgagcatc ggttggctcg cgagaggcga gcgagtgcag cgagcatccg      4980
     ttagcttgag agaggcgagc gatcgcacag cgcaccgccg ttagctcgag agaggcaagc      5040
     aacaacaaaa tgcatgacat gcaaaacagc cagcaacaaa aggcacgcag catacaaaac      5100
     gggcaacaac aacatgcgta ggcgcggtaa cccagtgaac aatttgcata gtgcatttaa      5160
     cacaggcaac aactatgcaa ggcaagagag agcgtgcaaa ggcatagact gcgtttccca      5220
     caggtgggca gacgaggatg cgggacaagg ggagcattgc agcggtactg gacgataccg      5280
     tagcgagtcg gcctgcctgg aagtcagcaa ctgcggaggg tgtgctagag caggccgacg      5340
     tgcatatccc gttcgacgtt gacgcgccta cgacgccggc agcgaagcgg ccggggttaa      5400
     aaacgcgagc acgcttcgag acggcctact attcggaatt atgcgaacaa aggagaagct      5460
     caaattcaac aacgtcctgg aaggcacacc cggccgatcc gcgactgctg gccgcgattc      5520
     gtctggagcg gcgtccgagc acgccgtgta ccaaccaggg cgcgggcacg acgagccgag      5580
     tgcgcctgcc accggtcagg cttccgttcc acccgcgacg acgcattcgc ccgaacctga      5640
     ggcggcatca gccgtatctg gagctggagc catcttccag cgaggaatcg aggtcgccgg      5700
     ccagctccag cggcacagag cggaggacgt ctttggaggg gacgcgagat gaatggccag      5760
     aagaggtggc ccaattggcg acgcagctag aggcaaaggg cagcagtcgg accgcgcgca      5820
     tcatctgggt gagaggcgtg aacaccgcat ccgccggaca cgcttgggat gtcgcgtctt      5880
     cacccagcgc tacgatgttg gttgttgttg gtcgacggaa agtgtgggcg cctgccacgc      5940
     ggccggtcgc ggcaactggc gtgacgggtg gagaaagggg ctctggcaaa tcctcgtgca      6000
     ttggccagcg attccgctgg agctatgcga agacgaagag agtgttgtca ttgccatttc      6060
     tcaacgtcac gacgccgttg accggtttgc gaacgacgcc gatactaacc aaagtccaac      6120
     agcaacccag gaaagtgatg gcgtggtccc atccaggagt cctgaagggc atccagagcc      6180
     catcagcagt caagaacata accgttccag cgccgaggga cgaggtgtgc caattgaaag      6240
     atttggccat cttacctgcg cacctgcgcc gcagccaccc gggggctgca atcacgagag      6300
     gagtgtttgc agcagcgccc ggcgtgtggg cagaggcggc ggcaggtcca tcgggtccag      6360
     gggcatcaat aaggcatcaa ctcgggctgg aggagtggaa gttaacgtta aaaatacgca      6420
     agagaaaatt aaaaaaaaac atcatattca cttaccagca acgcacggag ttgccagcag      6480
     cgaacgggaa acagctggtg agcagcgcgg cgctgttaac agagcgttaa cagcaatgat      6540
     cgacgcgcgt atagagcacg cgtgtcatcg ataacgcaag gtggagcagc aaggagaaaa      6600
     gaggcgcgga attcaaaaac acgaaggtcg tgttttccga aggaagaggg gag             6653
//
ID   OSVALDO_LTR repbase;    DNA;    INV; 1196 BP.
XX
AC   AJ133521;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   OSVALDO_LTR is a long terminal repeat from OSVALDO, a gypsy-like
DE   endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR; OSVALDO; OSVALDO_I; OSVALDO_LTR;
KW   endogenous retrovirus.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-1196
RA   Pantazidis A., Labrador M. and Fontdevila A.;
RT   "The retrotransposon Osvaldo from Drosophila buzzatii displays
RT   all structural features of a functional retrovirus.";
RL   Mol. Biol. Evol 16(7), 909-921 (1999).
XX
RN   [2]
RP   1-1196
RA   Labrador M.;
RT   "OSVALDO_LTR.";
RL   Direct Submission to Genbank (05-MAR-1999)Labrador M., Department
RL   of Biology, Johns Hopkins University, 3400 N Charles Street, MD,
RL   21218, USA.
XX
DR   GenBank; AJ133521; Positions      21    1216.
XX
SQ   Sequence 1196 BP; 347 A; 277 C; 329 G; 243 T; 0 other;
     tgtgaggagc aatataggta tgcacgtatg cagtgtatat gaacacatgt atttgctgtg        60
     tgtttatatg cacatacgtg catgcatata ttgctccaca cagcgacgcg aacactatag       120
     gagcaaccct cgcgactgga agggtcagag agcggactat agtctgtctc tctcgctcct       180
     aaagtgtcag caaatgggct cgcgtcgctc acccgcgggt catagggcac cgttagccga       240
     ggtaccgctg caagtattgg atgctctctc tttgcatagc aacagcggta cttcggccaa       300
     cgaaaagcgg ccgcaatatt tggcgggctg ctggcgtcac ccagatcacg ccattgtgcc       360
     gttatgtggg cacgagcggc aggcaggccc cgctctagag ccgaacaggg cctgcggcgg       420
     ccctataaaa gggcaccggc ggtgtcatag agggcaatca agaatcggaa tcaagaatcg       480
     agagtgaaac taatgtggat caagaatcaa gagtgaagtg agattcaagt gaaagtgcaa       540
     gtacgaggca acgcgagtga ggacacaaga catcgaagga ctacgatatc gacgcaggac       600
     accgatatcc aggactcgaa tcaggcagga catcgtggga gcatccaaag tatcctggga       660
     ggatacttca gacgcctaat aaggaccacc gacacgcaga agcagcagtg gccatcagct       720
     agagagttga tacagggcag ctgcaactcg tagtctggtc agaagtctcg tcacagaatt       780
     gtgtaagttc acgcagccgt gcgaataggt agcaattgtg cgcataagaa cctaggtgtg       840
     ccaagagcga gtccagtagt aggagtagcc tgtacagccg agcgaaccgc cggagtagac       900
     agtgcaaatc ctggcgtgag ctggagcgct tgggcgaatc ctggtgctac tgagccataa       960
     ttgtctgccc agccggagtg cgtgaacaaa cataacgcac gacgactata caagtgtgat      1020
     tatatcgcta aataataata agttttataa cgagaatata ccaagtacca agcaaattca      1080
     caaagtgtta ttattcaaaa tcgcaagggc ttcaacaaat aaatttgttg aaacgaatcc      1140
     acagtcggct gaaactggcc cggcttagac tcgggtataa ccgaaggttc gttaca          1196
//
ID   otherMITEs_Ele11 repbase;    DNA;    INV; 692 BP.
XX
AC   .
XX
DT   12-OCT-2010 (Rel. 15.10, Created)
DT   12-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   otherMITEs_Ele11.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-692
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-692
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (12-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. >97% identical to consensus. This consensus
CC   is ~98% identical to the original sequence in [1]. 8-bp TSDs.
CC   TIRs are ~300 bp long.
XX
SQ   Sequence 692 BP; 219 A; 134 C; 136 G; 203 T; 0 other;
     tagtgtggga caaaatttag attctcgctc cagtccactt tttggattgc atttaggtcc        60
     cataacaact gtgcaaaatt tcagctcgat cggagaaact atattttagc gccagccgtt       120
     caaagtttgt atgggattta ctatgggaaa acttactttt gcaaagaaaa atcgccagag       180
     gtcgcccatt gacctctata aaaattctga acacagacct cgataggtat ttttacgatg       240
     aagaatattg ccgaagaccg cgaaacaatc cgacacttgt gaaaaaagtt attcaatgaa       300
     aacctattgg caacgcgacg ttgattaaca cgtaaaggaa taacaataat aacaaaatcg       360
     ggcaaaattt ccgaatagtc tatgcttaat aacttttttc acaagcatcg gattgctttg       420
     cggtcttcgg caatgttgtt catcgtagaa atacctatcg agatctgtgt tcagaatttt       480
     tatagaggtc aatgggcggc ctctggcgat ttttctttgc aaaagtaagt tttcccatag       540
     taaatcccat acaaactttg aacggctggc gctaaaatat agtttctccg atcgagctga       600
     aattttgcac agttgttatg ggacctaaat gcaatccaaa aagtggactg gagcgagaat       660
     ctaaattttt catataaccg tgtcccaggc ta                                     692
//
ID   Outcast-16_AAe repbase;    DNA;    INV; 4897 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-16_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4897
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1430-1430 (2011).
XX
DR   [2] (Consensus)
XX
CC   There are 3 complete sequences with >99% identity in the genome
CC   of Aedes aegypti.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..985
FT                 /product="Outcast-16_AAe_1p"
FT                 /translation="MLLETTGIIKNVPISLTEKDIYHNTISAKKITRIERI
FT                 KKRSEPKDPNSKLVDTRSIKITFEGPELPETVCIYGVLEKPEIYIYPVKIC
FT                 TKCWRLGHKEIACKSKKTCIKCGEYVTENHTHDEEHLTPKCRNCGGDHFPT
FT                 NKDCPERIRMEHINVAMTVNKMTFPEAEQLYPKTNIKTSNRFALLESTVEF
FT                 PQLEQPSRTNAQFRRINQTNTTKVDYRKIINNMTNDPRPKPSKTRPEIQKN
FT                 IFPTPETYPEQVHVIENNPHKVTDTEKLKTEQENLTKQLQHIFEKITDKNN
FT                 DNKIESDVLLIEIASMIQNLIQLTNSHNKK"
FT   CDS           1012..4659
FT                 /product="Outcast-16_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MGNCFLGDLIISQLNIHSIRPLHKRETIKTYLKTKNI
FT                 HIFLLQETWLKPDEKYKFLNYNFIKNCRLDGYGGTGILVHPTLVYEELTFP
FT                 NIDLELTAIIIKNTKHPIIFISIYIPPDTPFNEVKEPLEKLFDFINNSTTP
FT                 VFLGGDLNAHHPTWDNVSNKIDRRGELISELIENHDIILLNTGVATRWEDL
FT                 NYNPSAIDLTITTPELGPLTNWETSTDDLGSDHKLIECSITSYNKFDSDTP
FT                 RTIISKKQAIENINEIDFRQLTSVDELNSEVNKAINKATFTIRPNSKKKVK
FT                 PYWNENIKQLYETKNKKHIEFRNNLTLENKHEFKKAERNFKKALKKEVYEY
FT                 RNKMLDEINEQTSVNEMWKIVKCISGNFKYKDNSELINNQDLANKFIELNF
FT                 KNETNNDISRIGTNFDVVEEKYIAPLNIKNMINTIKGKKDTSAAGQNKLSY
FT                 YILKNINSNLLIKILELTNKVWMDELIPEEWLLIKIIPILKPGKDKMKETS
FT                 YRPIALININLKIINCEIKERLNSFLDQHNLIPDLSYGFKKGYSAINCVNH
FT                 INSIITEARRQKQQVATIFLDLTKAFDSVDINILLKQLEGLRIPRKIINWF
FT                 ELYLKNRKIVMQTTQGEITQSTNKGLPQGCPLSPILFNVYTRDLHNITTDK
FT                 VIFIQFADDFSITIIGDSLEEIELTSNIVLETLREQLASLKIEINPDKSAV
FT                 VLFNSKMNNKINVKINNTPIEQKEHHKYLGYIVDNKLSHKPHINYVNTKIK
FT                 KRLNIMKMICKKNSGAHPKTALKISKAIIRSQVDYGLTLYGGTAKTNLLKL
FT                 NSSFNSALRTSLRLLKSTPINVLYSEAGEIPIYQRAKWLTKKEAINTFANN
FT                 KPITQILSKFLELENLTKYFTFLELTVFENNYLIIQTHNASQQIESNINLK
FT                 EIIQNEIPNIKLKTMNNETVKRITLNYLNENYGNFQKIYTDGSKTTDACGI
FT                 GVWCEDNNEKLKCQVNQAMSIMNVELMAIKTAIEIIETKEQQTFIICTDSK
FT                 SALTSIKNKNIKNNFIIQDIINKLNKTNKTIVLQWVPGHKGITGNEKADIL
FT                 SKEGCTSEHKIHTKIPLNDTLNLAKAETLQEWIQEYTTTSTQKGTKHFNLM
FT                 QIPSFKPWFHKLDLNTQQIVTIGRLRTYHIITKEKLHMWNLVQDDKCDHCG
FT                 VKEDSNHIFLQCSKHSQSRRKYKILTQHNDMESVLNNATTKDYRQISEFVK
FT                 TNNITI"
XX
SQ   Sequence 4897 BP; 2164 A; 966 C; 681 G; 1085 T; 1 other;
     caaagctttc attccgcgaa tgttgctcga aactaccgga ataatcaaaa acgtaccaat        60
     atcgctaacg gaaaaagaca tataccacaa cacaatttca gccaaaaaaa tcacgcgaat       120
     cgaacgaatt aaaaaacgta gtgaaccaaa agatccgaat tccaaactag tagacacaag       180
     atcgataaaa atcacttttg agggaccaga acttcccgaa acagtatgca tctacggtgt       240
     actcgaaaag ccagaaatct acatctaccc agtgaaaatt tgtaccaaat gttggagact       300
     cggtcacaaa gaaatagcct gtaaaagtaa aaaaacatgt attaaatgcg gagaatatgt       360
     aacagagaac catacacacg acgaagaaca cctaacacca aaatgtagaa attgtggagg       420
     agatcacttc cccacaaaca aagactgccc agaacgaatc agaatggaac acattaatgt       480
     agccatgacc gttaacaaaa tgactttccc cgaagctgaa caactctatc caaaaacgaa       540
     catcaaaaca tctaacagat ttgctttact cgagtctacc gttgaattcc cacagttgga       600
     acaacccagt aggactaacg cacaatttag acgaattaat caaacaaata cgacgaaagt       660
     ggactacagg aaaatcatta acaacatgac aaacgaccct agacccaaac cctcaaagac       720
     caggccagaa atacaaaaaa acatcttccc aacaccagaa acgtatcctg aacaagtcca       780
     tgtgatagaa aacaatccac ataaagtcac agacacagaa aaactaaaaa cagaacaaga       840
     aaatctaacg aaacaactac aacacatctt cgaaaaaatc acagacaaga ataacgataa       900
     caaaattgaa tcagacgtac tactaatcga gatagcgtca atgatacaga atttaattca       960
     actaactaat tcacacaata aaaagtaata atccttagtt aagacacgat tatgggtaat      1020
     tgctttttag gtgatctcat catatcccaa ctaaacatcc atagtatcag accattacat      1080
     aaaagagaaa caatcaaaac atacctaaaa acaaaaaaca ttcacatctt tcttcttcaa      1140
     gaaacttggc ttaagccaga cgagaaatac aaatttctca actacaattt cataaaaaac      1200
     tgtagactag acggttatgg gggaactgga atcctagtcc accctacact ggtttatgaa      1260
     gaactaacgt ttcctaacat agacttagaa ctaacagcaa taataattaa aaacaccaaa      1320
     catccaataa tattcatttc aatatacatt ccaccagata cgccatttaa cgaagttaaa      1380
     gaaccattag aaaaactttt tgacttcata aacaacagca caaccccagt attcctggga      1440
     ggagatttaa atgcacatca tccaacttgg gataatgtat ctaacaaaat agacagaaga      1500
     ggagaactaa ttagtgaact catagaaaac catgacataa tactattaaa caccggagta      1560
     gcgacaaggt gggaagactt aaactataac ccatccgcca tagatctaac tatcactaca      1620
     ccagaattag gaccattaac aaactgggaa acaagtactg acgacctagg atcagaccac      1680
     aagctcattg aatgcagcat aacctcttat aacaaatttg atagtgacac accaagaacg      1740
     ataattagca aaaaacaagc aatagaaaat attaacgaaa ttgacttcag acaattaaca      1800
     agcgtagatg aactaaattc agaagtaaat aaagcaatca acaaggccac atttacaata      1860
     cgtcctaaca gtaagaaaaa agtcaaacca tattggaacg aaaacataaa gcaactctac      1920
     gaaactaaaa acaaaaaaca catagaattc agaaataatt taacattaga aaataaacac      1980
     gaattcaaaa aagctgaacg taatttcaaa aaagctttaa aaaaagaagt atatgagtac      2040
     aggaataaaa tgctcgatga aattaacgaa cagacgagcg tcaacgaaat gtggaaaatt      2100
     gtaaaatgta taagcggtaa tttcaaatac aaagacaact cagaactaat caataatcaa      2160
     gatttagcta ataaattcat tgagctcaat tttaaaaatg aaacaaataa tgatatttca      2220
     agaataggaa ccaatttcga tgtggttgaa gagaaataca tagcaccatt gaatattaaa      2280
     aacatgataa atacaataaa agggaaaaaa gacacatctg cggccggaca aaataaatta      2340
     tcatattaca tactcaaaaa catcaattcg aacctactga ttaaaatctt agaattaacc      2400
     aataaggtat ggatggacga actaatacca gaagaatggc ttcttatcaa gatcatacca      2460
     atcttaaaac cgggtaagga taaaatgaaa gaaacatcgt atcgaccaat agcactaata      2520
     aacataaatt tgaaaataat taactgcgaa attaaagaaa ggctcaattc attcttagat      2580
     caacacaatc ttatacccga cttgtcatac ggattcaaga aaggatattc tgccattaac      2640
     tgcgtaaacc atattaattc aattataaca gaagccagac gtcaaaaaca gcaagtagca      2700
     acaatattct tggacctcac taaagctttt gattccgtag atattaacat tttgcttaaa      2760
     caactagaag gactaagaat cccgagaaaa atcataaact ggtttgaatt atacctaaaa      2820
     aacagaaaaa ttgtcatgca aaccacccaa ggcgaaataa cacaaagcac caataaagga      2880
     ctaccacaag gttgcccact ctcccctata ttgttcaacg tctatacgag agacttacac      2940
     aacataacaa cagacaaagt gatttttatc caatttgccg acgatttctc aataacaatc      3000
     ataggggact cattggaaga aatagaatta acatcgaaca ttgttttaga aacattaaga      3060
     gaacaactag catccttaaa aatagaaata aacccggaca aatcagcagt agttttgttc      3120
     aattctaaaa tgaacaataa aattaatgtt aaaatcaaca acactccaat agaacaaaaa      3180
     gaacaccaca aatatctagg gtacatcgta gataataagc tctcccacaa accacatata      3240
     aactacgtca acaccaaaat taaaaaaaga ttaaacatta tgaaaatgat ttgtaaaaaa      3300
     aatagtggag cacacccaaa aaccgcactg aaaattagta aagcaataat cagatctcag      3360
     gtcgattacg gtctgacact gtatggagga acagcaaaaa ctaatttatt gaaactaaat      3420
     tcatctttca actcagcgct tcgaacaagt ctaagacttt taaaatccac cccgataaac      3480
     gttttgtact cagaagcagg agaaattccc atctaccaaa gagctaaatg gttgactaaa      3540
     aaggaggcca tcaacacttt cgctaataat aaaccaataa cccaaatctt atcaaaattt      3600
     ttagaattag aaaatctaac taaatacttc acattcctag aattaacagt attcgaaaac      3660
     aattatctaa taattcaaac gcataatgcc tcacaacaaa tcgaaagcaa cataaatctt      3720
     aaggaaatca tacaaaatga aatacccaac attaaactaa agaccatgaa caacgaaaca      3780
     gtaaaaagaa taacattaaa ctatttaaac gaaaactatg gaaattttca aaaaatttac      3840
     accgacggat cwaaaactac cgacgcctgc ggaataggtg tatggtgcga agacaataat      3900
     gaaaaactaa aatgtcaagt aaaccaagca atgtcaataa tgaatgtaga attaatggca      3960
     ataaaaacgg ccatcgagat aattgaaact aaagaacaac aaacatttat aatttgcaca      4020
     gactccaaat ctgccctaac aagtattaaa aataaaaata ttaaaaacaa ttttataata      4080
     caagatataa taaataaact caataaaaca aacaaaacaa tagtactcca atgggtacca      4140
     ggtcacaaag gaataacagg taacgaaaaa gcagacatac tttccaaaga gggatgtact      4200
     agtgaacaca aaattcatac taaaatccca ttgaatgata cactaaacct agccaaagct      4260
     gaaacactcc aagaatggat acaagaatat actacaacat caacacagaa aggcacaaaa      4320
     cacttcaacc ttatgcaaat cccatcattc aaaccatggt tccataaact ggatctaaac      4380
     acacaacaaa tagtaacaat tggccgtctg agaacatatc acataataac taaagaaaaa      4440
     ttacacatgt ggaatctagt tcaagatgat aaatgtgacc actgtggggt aaaagaggac      4500
     tccaaccata tctttctaca atgctcaaaa cattctcaat caagaagaaa atacaaaata      4560
     cttacacaac acaatgacat ggaatctgta cttaataatg ctactaccaa agactaccgt      4620
     cagatatcag aatttgtaaa aacaaacaac attacaattt agactaacac tacagaaaca      4680
     caaaatcact cgtggtttca aataaacaaa aatgaccgat ctaatgaatt cggtcccatt      4740
     attaattaca cgaaaggaaa agatcaatag agatcgcgaa cgattttaga attgagcgat      4800
     agagttgctc taacacactt cacgacttga cattccttgg cagtatagac tgacagtaca      4860
     gcagtctcgg ccacccagag gagaagaaga agaagaa                               4897
//
ID   Outcast-17_AAe repbase;    DNA;    INV; 5795 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-17_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5795
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1431-1431 (2011).
XX
DR   [2] (Consensus)
XX
CC   There are 4 complete sequences with >99% identity in the genome
CC   of Aedes aegypti.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..1894
FT                 /product="Outcast-17_AAe_1p"
FT                 /translation="MDTTRTDDPKLPPDKGKEWMETNLPNTDDEDLFAGFS
FT                 EQEQTPTQQENHQRKRRDNDTHLDKQTKQLKKSQPHTQLSTRSQTQKQIKN
FT                 STDNLTSNTTNAKSNNQHINNDRTIWIQNNQHDVLFIEPISIKEGEKLLEP
FT                 MEVGKFLHDTGLDQFTELKRAGQYRYKLIYKKPKDAEKLLNATQLLKNNNY
FT                 RAFIPRMLLETTGIIKNVPISLTEKEIYQNTISDKKITKIERIKRRKDPKD
FT                 QKSELINTRSIKVTFEGPELPRTVSIYGVIEKPEIYIYPVRICTKCWRLGH
FT                 KDTACKGKKTCIKCGQQETDKHTECDKTQKRICRNCGGNHLPTNKECPERV
FT                 RMEHINVAMTINKMTFQEAQQLYPKHTLQTSNRFALLESTVEFPQLEQPSM
FT                 TNTKFRQVNQTTSKKLDYRGIIRNITNNDTESKPKTKTETHKNTFPTVDTY
FT                 PEQVHVIENNPHKVTEPEKLQTEQENLTKQLQNIIEKITNKTNDNKLDSDL
FT                 LLIEIASMIQNLIHLTKSRKTSNT"
FT   CDS           1907..5551
FT                 /product="Outcast-17_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDNCFLNDLNISQLNIHSIRPLHKRETIKTYLXTNDI
FT                 HIFLLQETWLKPDEKYKFLNYQFIKNCRPDGYGGTGILVHSTLIYEEITIP
FT                 DIKLEMTIVKIKNLKQPIIFISLYLPPDTPITEIKEPLEKLFNYIENSTVP
FT                 VFLGGDLNAHHSTWDKISNKTDRRGELISELLGNHDVIFLNTGVATRWEDX
FT                 NNNSSAIDLTITTPDLGPITSWETSSQDLGTDHKLIECHIIQYNKFNNHAQ
FT                 KTIISKNKAIENLNQIDPNTLTNVEDLNKEINNAMKKATYDIYPNSKKKIK
FT                 PYWNENIKKLYEIKNKKHIEFRNNLTLANKHEFKKAELNFKKALKKEVFEY
FT                 RDKMLNEINEQTNVNQMWKIVRCVSGNFKHKENSEIINNKELATKFIELNF
FT                 KEEAMTNHSHSNTNYDVEEEIYVEPLKIENMIKTIRERKDTSAAGANRLSY
FT                 YFLKNINLKLLTKILELTSQVWMNEKIPEEWLLIKIIPILKQGKDKLKESS
FT                 YRPIALININLKLINCEIKKRLNKYLEIENLIPSLSYGFRKGYSAINCINH
FT                 INSIITEAKRQKQIVATIFLDLTKAFDSVDINILLNKLDDLRIPRKITTWL
FT                 DLYLKNRKIIIQTTQGDIIQNTNKGLPQGCPLSPLLFNVYTRELHDINTDK
FT                 VIFIQFADDFSITIIGESIEEVETTSNIILEQIKSKLASIKIDINPEKSAV
FT                 ILFNSKLNDKINIRINNVQIVQKEIHKYLGYILDYKLSHKAHINYVNDKVK
FT                 KRLNVIKMICKKNKGAHPKTALKINKAIIRSQIDYGLTLYGGTAKTNLAKL
FT                 NSSFNTSLRTCLRLLKSTPINVLYAEAGELPIKYRARWLAKKEAINTFFHD
FT                 KPIVQIISKFLELDDLPKCYTFLECIIFENNYLIIITNNKTESXNTIELNE
FT                 LIKTEIPGVKSQDMNNTAIKMITINYLNQKYDQFHKIYTDGSKTANACGIG
FT                 IWYEQKNEKIKCKVNNAMSIMNVELMAISTAIDIINTKDTNNFVICSDSKS
FT                 ALISIKNKNTDDNFIITDIRNKINKTRKTINFQWVPAHKGIIGNEIADTLS
FT                 KEGCTNEQMIHTRIPLKDTINLAKIETLEEWTQEYITTSTEKGVKHYNLMP
FT                 KPTFKPWFDKLELDTIQIVTIGRLRTFHTLSKEKLYLWKLTQDDKCDICGV
FT                 KEDSSHVLLHCTKYSQSRMQYKILTEHDNIETLLDQAGANNYREISKFVQT
FT                 NNITI"
XX
SQ   Sequence 5795 BP; 2568 A; 1103 C; 827 G; 1293 T; 4 other;
     cattcctcct caaaccgtcg ttctgagcgg accacaagag ccaatcaaaa aaccagtcga        60
     gtgtagtgaa gcattttcaa accgcgtgcg cgaaaacttt tttccaaatt taaatctcta       120
     tctccatttt atatttcctt taattaatag ttttattttt ccacaaattt gataataagt       180
     acatagaaga gagaaaaatc ggccaataag tgttagttta taagttgtga atagaaataa       240
     aaaagagaaa aactcggtag tgattagtgt aagctaggtt aagaaaaaaa agtgaaaggg       300
     aggaacgcca gctgtatgtt ggctgaatcc taacatggac accacacgaa cagacgaccc       360
     aaaactacca ccagacaaag gtaaggaatg gatggagacc aatttaccca acacagacga       420
     tgaagaccta ttcgccggat tttccgaaca agaacagaca ccaacacaac aagaaaacca       480
     ccaacggaaa cgacgagaca acgacacaca cctagacaaa caaacaaagc agttaaaaaa       540
     atcacaacca cacacacaac tcagcaccag atcacaaaca caaaaacaaa taaaaaattc       600
     aacagataac ctaacctcaa acaccacaaa cgcaaaatca aacaaccaac acattaacaa       660
     tgaccgaaca atctggattc aaaacaacca acatgatgta ctattcatcg aacctatttc       720
     aatcaaggaa ggagaaaaat tactcgaacc aatggaagtg gggaaatttc tccacgacac       780
     aggactagac caattcacag aactcaaaag agcagggcaa taccgataca aactaattta       840
     caaaaaacca aaagacgctg aaaagctact aaacgcgaca caactactca aaaacaacaa       900
     ttacagagca ttcattccaa gaatgctact ggaaacaaca ggcataatca aaaatgtacc       960
     gatatcactc acagaaaaag aaatctatca aaacacaatc tctgacaaaa aaatcacaaa      1020
     aatcgaaaga atcaaaagac gaaaagaccc gaaagaccaa aaatcagaat taattaacac      1080
     tcgatccatc aaagttacct ttgaaggacc agaactsccg cgaactgttt cgatctacgg      1140
     tgtcattgaa aaacccgaaa tttacattta cccggtaaga atatgcacaa aatgctggcg      1200
     actagggcac aaagacacgg cttgtaaggg gaaaaaaacc tgcattaagt gtggtcaaca      1260
     agaaactgac aaacacacag aatgcgacaa gactcaaaag cgaatctgta ggaattgtgg      1320
     tgggaatcac cttcctacca acaaagaatg tcccgaaagg gttaggatgg aacacataaa      1380
     tgtagcaatg accataaata aaatgacctt ccaagaagcc caacagcttt accccaaaca      1440
     caccctacaa acctccaaca gattcgcttt gttagagtct accgttgaat tcccacagtt      1500
     ggaacaaccc agtatgacaa acacaaagtt cagacaagtc aaccaaacaa catctaaaaa      1560
     acttgactac agaggaatca ttcgcaatat cacaaacaat gacacagaaa gtaaacccaa      1620
     aaccaaaaca gaaacacaca aaaacacctt tccgactgtt gacacttatc ccgaacaagt      1680
     acacgtaatt gagaacaatc cacataaagt aactgaacca gaaaaacttc aaacagaaca      1740
     agaaaaccta acaaaacaac tccaaaacat catcgagaaa attacaaaca aaactaatga      1800
     caacaaactg gattcagact tactccttat tgaaatagct tcaatgatac agaacctaat      1860
     acatttgacg aaatcacgta aaaccagtaa cacctaaaat ttaatcatgg ataattgctt      1920
     tttaaacgat ctaaatatat ctcaactaaa tatacatagt ataagacctc ttcataaaag      1980
     agaaacaata aaaacctacc ttaawactaa tgacatacat atattcttac ttcaagagac      2040
     ttggcttaag ccagatgaga aatacaaatt tctcaactat caattcatta aaaactgtag      2100
     gccagacggc tacggtggca ccggaatttt agtacactct acgttgatat acgaagaaat      2160
     aacaatccca gacataaaac ttgaaatgac aatagtaaaa attaaaaacc ttaagcaacc      2220
     aataatattc atctcgctat atctaccccc agacacacca ataacagaaa tcaaagaacc      2280
     actcgaaaaa ctttttaact acatcgaaaa cagtaccgtt ccagtatttt taggaggaga      2340
     tttgaatgct catcactcaa catgggataa aatttcaaac aaaactgaca gaagaggaga      2400
     gctaataagt gaattactag gaaatcatga cgtcatattc ttgaacactg gagtcgcaac      2460
     caggtgggaa gacmtaaata acaattcttc agcaatagat ttaacaatca caacaccaga      2520
     cctaggacca ataacaagtt gggagaccag ttcacaagat ttaggaacag accataaact      2580
     tatagaatgc cacattatac aatataacaa attcaacaac catgcacaaa agacaattat      2640
     tagcaaaaat aaagcaatag aaaaccttaa ccaaattgac cctaacactc tcacaaatgt      2700
     tgaagacctt aacaaagaaa taaacaacgc aatgaaaaaa gcaacatatg atatataccc      2760
     aaatagtaag aaaaaaataa aaccttactg gaacgaaaac attaaaaagc tctacgaaat      2820
     aaaaaacaag aaacacatag aattcaggaa caatttaact ctagctaaca aacacgaatt      2880
     caaaaaagca gaattaaact tcaaaaaggc tttgaagaaa gaagtatttg aatacagaga      2940
     taaaatgtta aatgaaataa atgaacagac caatgtaaac caaatgtgga aaattgtcag      3000
     gtgtgtaagt ggcaatttca aacataaaga aaactctgag ataattaaca ataaggaact      3060
     tgcaacaaag ttcattgaac tcaacttcaa ggaagaggca atgacaaacc attctcattc      3120
     aaacactaac tacgacgtag aagaagaaat ttacgttgaa ccattaaaaa tagaaaatat      3180
     gattaaaaca atccgagaaa gaaaagacac ttcggccgca ggagcaaata ggttatcgta      3240
     ttatttcttg aaaaacatca atttaaagct tttaactaaa atattagaat taaccagtca      3300
     agtttggatg aatgaaaaaa taccagaaga atggttatta atcaaaataa ttccaatatt      3360
     aaaacaaggt aaagataagc ttaaagaatc atcgtataga ccaatcgctt tgataaacat      3420
     aaacttgaaa ctaataaact gtgaaattaa aaaacgatta aacaaatact tagagattga      3480
     aaatctaata cccagcttat catacggatt tagaaaagga tactcggcaa ttaattgtat      3540
     caaccatata aactcaatta taacagaagc aaagagacag aaacaaattg tagcaactat      3600
     tttcttagac ctcacaaagg catttgactc agtagacata aacatcttat taaataaatt      3660
     agacgaccta cgaattccta ggaaaatcac aacttggtta gatctgtacc taaaaaacag      3720
     gaaaataata atacaaacaa cacaaggaga cataattcaa aataccaaca aagggttacc      3780
     acaaggttgc cccctctcac cactattgtt taatgtttat acaagagaac tacatgatat      3840
     aaatacagac aaagtaattt tcatacaatt tgcagacgat ttttctatta caataattgg      3900
     agaatcaata gaagaagtag aaacaacatc aaacataatt ttagaacaaa tcaagagtaa      3960
     actggcatca atcaaaatag atatcaaccc ggagaaatcc gctgtcattt tattcaactc      4020
     aaaactaaat gacaaaataa atattagaat aaacaacgta caaatagtac aaaaagaaat      4080
     acataaatat ctaggataca ttctggatta caaactttca cacaaagcac acataaatta      4140
     tgtaaatgat aaagttaaaa aaagattgaa tgtaattaaa atgatatgta agaaaaacaa      4200
     aggtgctcac cctaaaacag cactaaaaat caacaaagca attataagat cacaaattga      4260
     ctacggatta acattatatg gtggaacagc gaaaaccaac ttagctaaac taaactcttc      4320
     gtttaatact tcattaagga cgtgccttag attgttgaaa tcaacaccca taaatgtact      4380
     atacgctgaa gcaggagaat taccaatcaa atatagagct agatggctag ccaaaaaaga      4440
     agcaatcaat acctttttcc atgataaacc aattgtacaa ataatttcaa aattcttgga      4500
     actagatgat ttacctaaat gctatacatt cttggagtgc ataattttcg aaaacaacta      4560
     tttaataata ataaccaaca acaaaactga aagtwcaaat actattgaac taaatgaatt      4620
     aataaagacc gaaattcctg gggtaaaaag ccaagatatg aacaacactg ccataaaaat      4680
     gataacaata aactatctaa atcaaaaata cgatcaattt cacaaaatat atacagacgg      4740
     ttctaaaaca gcgaatgctt gcggaatagg tatatggtac gaacaaaaaa atgaaaaaat      4800
     caaatgtaaa gtcaataacg cgatgtcaat tatgaacgta gaactaatgg ctataagtac      4860
     agctatagac ataattaata ccaaagatac aaacaatttt gtgatttgct cagattcaaa      4920
     atctgcactg ataagtataa aaaataaaaa cactgatgat aacttcatta taacggatat      4980
     tagaaataaa ataaacaaaa ctaggaaaac tataaacttt caatgggtac cggctcataa      5040
     aggtataata ggaaatgaaa tagcagacac cctctctaaa gaaggatgta ctaacgaaca      5100
     gatgattcac acaagaatac cactcaagga cacaattaat ttagcgaaaa tagaaacact      5160
     agaagaatgg acacaagaat acatcacaac ttcgacagaa aaaggagtta aacattacaa      5220
     tcttatgcca aaacctacct tcaaaccgtg gtttgataaa cttgaactgg atacaataca      5280
     aatagttaca atagggagat taagaacatt ccatacctta tcaaaagaaa aactgtattt      5340
     atggaaatta acacaagacg acaaatgcga tatctgtggg gttaaagagg actccagcca      5400
     tgtcttacta cactgcacaa aatattcaca atcaagaatg caatacaaaa tactaactga      5460
     acacgataac atagaaacat tacttgacca agccggcgct aataactatc gagaaatttc      5520
     aaaattcgtt caaacaaata acataacaat ataataacta acaccaaaca gagcgatttt      5580
     tctctttgac agtacaacta cagtagttta ccgactaaat tggatcggta caatctatta      5640
     attaaccgaa aaaaaaagat tgatagagat ttcgatcgca ttaagtaaat ttaagggacg      5700
     atggagatgc cctaatcata tgcttcatga tttgacaaca cttggcagta tagactcaca      5760
     aaagtctcgc catcagagga ggagaagaag aagaa                                 5795
//
ID   Outcast-18_AAe repbase;    DNA;    INV; 5647 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-18_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5647
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1432-1432 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1864
FT                 /product="Outcast-18_AAe_1p"
FT                 /translation="MNGDVDNGIEIEDCSISEGKTFDERNKRKLHEKDDID
FT                 PKRLQTEMGRKKENGGIATGINTTDANMADTGXITNTTHQTRTQKLIKYTT
FT                 KDLTQTQTQPTRMTHTQQDNCDTHDTRSQRDKNKNEKDVLKLDQWEKNNVH
FT                 TVFFIERQNKDEKSIHPMLLAKILHNVGVKQYKELKSAGYGRFRITFHKPK
FT                 DAEVLINSALLKENFKFNIYIPNMLKQTIGVVRNVPPTITDEEIINNIQAG
FT                 KKKVFKVERINKMKKIDGDNVLVPTFTIKIYVEGQELPEEVSIYGIVAKVD
FT                 FYIFPVKQCVRCWRFGHRIKTCRSSRPRCVVCGLDHESDICWDAPTCVHCN
FT                 GSHKANDRNCPERIRQDMILQAMAREKLTFTEANIKFPRNRSVQDRLQPAI
FT                 NSLQEFPTLPSNPNHEKQKQNNTVNKYQQSTNLNSIQNTNIEEIVNRVKTE
FT                 LIKQLNLDTIMDKIKTMQETISNNNQLKQSGKKSKDAQTLLTEIMNEMKSI
FT                 SNPEVTVTQKSNSKPKQNGQVQKSQVNTT"
FT   CDS           1830..5450
FT                 /product="Outcast-18_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MDRYRNLKLIQHNITSIRPLETRKILKNFLSGNNIDI
FT                 AILQEIWMKPNEDFKFPGYNFIKSLRINGYGGVGLILKNEIKYEEIKLPKL
FT                 EPIEAIAIKTLNTITEMIIISIYIPPLPINNNDIKEPLKKLFDSIENWNTT
FT                 TILAGDFNAHSKIWNNKQQDCARGKLLSSLIDITNLVILNDGAPTLIKSPN
FT                 TTPSTIDLTIVTPDIAGKIEWKVIDDEMESNHKIIAIDIQNTAKQYTTNKE
FT                 VLNKKQAIENINKIVPNEIHNQYQILTSLKEQIKNAKFKPKNKKQTPKPWW
FT                 NDEINNLYRIKNQHLIEYFRNQTYENYLKFKKSKAKLKQTIRRESRKSWNK
FT                 LIETINPDMDQRNLWNTVRRISGGFPSKNNLVLLNDTNMANSFMNFNFPEI
FT                 VTDLEFTPTTTDEKIIITYAEVLQLINSKKDHSSPGIDEISFYMLKNINPL
FT                 LLSKIVELLNIVVNSGEIPDDWRDIKIIPILKHLKNPNNINSYRPLAMLCV
FT                 ILKIINFVIKRHLNSFLEQNNIIPDYSFGFKKKTSAINCVNTLISHVHNAK
FT                 RNKKVVIATFLDLSKAFDNVDIKILLKKLSELKVPTAIVNWIYYYLKKRNT
FT                 KLILNDGTVLTTTTNKGLPQGCPLSPILFNIYTTELHSLAEDDKILFQFAD
FT                 DFTVMIIADNLQLATEKMNLFLSKIAEKLNNLGMIINSDKCATIIFTNKFH
FT                 PNTNISINNNPIEVKAFHKFLGIQIDHKLNYKTHIDATVVKAKKKINILKM
FT                 VGKRKNGAHPETMLKVAKAIVQPHLDYGLSIIAKASKTVFAKLETVQHLYI
FT                 RTCMRFLRSTPNHVILAESGILPLKERAEYLTLKEIIKTLYYQNSPLTKFI
FT                 KSFITSEDLPTQCSYLERIASINNYHLIQLGPKIPFEKTTKLKVFTEIDNL
FT                 KKKETTIAVQRQMTIELISHKYKNDYKIFTDGSKIDGKAGYGIYDSREKIS
FT                 YSGRLKTQFTIMSAEIFAILKAVEYLMTKNVKNAVILTDSKSAAILIKNNT
FT                 TNDNFLVGKLIREINKSQIEKLTIQWIPGHAGLIGNERADLAAKLGTNKQQ
FT                 IENYPLTKDDLILNLKIETKCYWNQRYKIISEEKGIYHYMIDQNVRSKPWF
FT                 SDFKLSTQHTITINRLRTGHLATKDRLNAWGLVPNDKCEHCNVKEDIIHIL
FT                 HYCSKFDHIRREYPLLQNKEDLITILAGTNFKKIKEIAKFIGETGTNV"
XX
SQ   Sequence 5647 BP; 2359 A; 934 C; 940 G; 1413 T; 1 other;
     cattctcgca ccaacttgct ttgcagcaac acgtggaaag taagagctga gtcttggttt        60
     gctaccgcga agtcgatttt ggttgtgaaa aagaaatctg gattgtattt tcttccatct       120
     tggatgctag tggtgaaagt gtaaatatta tatcatagtt ttcgcgtttt tttttttaat       180
     tccgttagtt taaggccctc caatttatta gcataagtgg tgttggttag attagttaag       240
     aataaagtgt acatagttgt tataagagaa aaagtggtgt agatagtgga tgaacggtga       300
     cgtcgacaat gggatagaaa tcgaggattg ctcgatttcg gaaggtaaga cttttgacga       360
     gagaaataaa agaaaattac atgaaaaaga cgatattgac ccaaaaagac tgcaaacaga       420
     aatgggacga aaaaaagaaa atggcggaat tgcgacagga ataaacacga ctgatgccaa       480
     tatggcggac actggaawca ttacgaacac aactcatcaa acacgcacac aaaagttgat       540
     caaatacacg acaaaagacc tcacacaaac acagacacaa ccaacaagaa tgacacatac       600
     acaacaagat aactgcgata cacatgatac cagatcacag agagacaaga acaagaatga       660
     aaaggatgtt ttgaaactgg accaatggga gaaaaataat gtacacacag tatttttcat       720
     tgaacggcaa aacaaagatg aaaaatcaat ccaccccatg ttgctagcca agatccttca       780
     caatgtcgga gttaagcaat acaaagagct caaaagtgca ggttatggca gattcaggat       840
     tacattccat aaaccgaaag atgctgaagt attgattaac tccgcattgt tgaaggaaaa       900
     cttcaagttt aacatttaca taccgaacat gctaaaacaa acaataggag ttgtccgcaa       960
     tgtaccacct acgatcacag atgaggagat aatcaataac attcaggcag ggaagaagaa      1020
     ggtctttaaa gttgaaagaa tcaataagat gaagaagata gatggagaca atgtgctagt      1080
     tccgacattt accataaaaa tctatgttga aggacaggag cttccagaag aagtatcgat      1140
     atatggaata gtagcaaagg tcgatttcta cattttccca gtgaaacagt gtgtgagatg      1200
     ttggaggttt gggcacagga ttaagacatg caggagttca aggccgaggt gcgtggtatg      1260
     tgggttggat cacgaaagcg atatttgctg ggatgctcca acttgtgtac attgcaatgg      1320
     tagccacaaa gcaaacgata ggaattgtcc ggagagaata agacaagaca tgattctaca      1380
     agctatggcg agagagaaac taactttcac tgaggcaaac ataaaatttc cccgaaacag      1440
     atcagtacag gacagactac aaccagcaat aaactcacta caggaattcc caaccctacc      1500
     gtcgaaccca aatcacgaaa aacaaaagca aaataataca gtaaataaat accaacaaag      1560
     cacaaatttg aacagcattc aaaacacaaa cattgaagaa atagtaaaca gagtcaagac      1620
     agaattaatt aaacagctaa atctagacac aataatggat aaaatcaaaa caatgcagga      1680
     aaccatttcg aataacaacc aattgaaaca atcaggtaag aaatcaaaag atgcacaaac      1740
     attacttaca gaaatcatga acgaaatgaa atcaatttca aacccggaag tgacggtaac      1800
     acagaaaagt aattcaaaac caaaacaaaa tggacaggta cagaaatctc aagttaatac      1860
     aacataacat aaccagcata agaccactgg aaactcgcaa aatccttaaa aacttcctta      1920
     gtggaaataa tatagatatt gctattttgc aagaaatatg gatgaaaccg aatgaggatt      1980
     ttaaattccc tggttacaat tttattaaat cactaagaat aaatggatac ggaggagttg      2040
     gattgatatt gaaaaatgaa ataaaatatg aagaaattaa actaccaaaa ctagaaccca      2100
     ttgaagcaat agcaattaaa acattaaata caattacaga aatgataata atatcgattt      2160
     acataccacc tttaccaata aacaataatg acattaaaga acctttgaaa aaactctttg      2220
     actcaataga aaactggaat acaactacaa ttttggcagg tgactttaac gcacatagta      2280
     aaatttggaa taataaacaa caagactgcg caagaggaaa attattatca agcctgatag      2340
     acataacaaa cctggttata cttaatgatg gagcacccac acttataaaa tcgccgaata      2400
     caacgccttc tactatagac ttaacaatag ttacaccaga tattgcaggt aaaatagaat      2460
     ggaaagtaat tgacgacgaa atggaaagta atcacaaaat aatagcaatt gatattcaaa      2520
     atacagctaa acaatacaca acaaataaag aagttttgaa taaaaaacag gcaattgaaa      2580
     acattaacaa aatagtccca aacgaaatcc ataatcagta tcagatctta actagcttaa      2640
     aagaacaaat taaaaatgct aaattcaaac ctaagaacaa aaaacaaact ccaaaaccat      2700
     ggtggaatga tgaaatcaat aatttatata gaattaaaaa ccaacacttg attgaatact      2760
     tcagaaatca aacatacgaa aattacttaa aattcaaaaa atctaaagct aaacttaaac      2820
     aaacaattcg cagagaatca agaaaaagct ggaataaatt aatagagaca ataaatccag      2880
     acatggatca aaggaattta tggaatacag tcaggagaat cagtggtggt tttccaagta      2940
     aaaacaattt agtactattg aatgatacaa acatggcaaa ctcatttatg aattttaact      3000
     ttcccgaaat agtcaccgat ttagaattta caccaacaac aacagacgaa aaaataataa      3060
     ttacatacgc agaagttttg caattgatta actctaaaaa ggatcactct agccccggaa      3120
     tagacgaaat ttcattttac atgttaaaaa acatcaatcc attgttatta agtaaaatag      3180
     tagaattgct gaatatagtt gttaatagcg gagaaatccc agacgactgg agagacataa      3240
     aaatcatacc tatcttgaaa catttgaaaa acccaaataa tattaactct tacaggcctc      3300
     ttgcaatgct ttgtgtaatt ttgaagataa tcaactttgt gattaaaagg cacctcaatt      3360
     cttttttgga acaaaacaat attataccgg attattcttt tggatttaaa aagaaaactt      3420
     ctgctataaa ttgtgttaac acattaatct cacacgtcca taacgcaaaa agaaataaaa      3480
     aagtagtaat tgcgacgttt ctagaccttt ctaaggcttt tgataatgtt gatataaaaa      3540
     tattgctaaa aaaactgtca gaacttaaag tccctacagc tattgttaat tggatttact      3600
     actatctaaa gaaaagaaat acaaaattaa tactcaatga tggaacagtt ttgacaacaa      3660
     ctaccaacaa gggactgccc cagggctgtc ccctatcccc gattttattc aatatataca      3720
     caacggaact ccatagttta gctgaagacg ataaaatctt atttcaattt gccgatgatt      3780
     tcactgttat gataatagct gataacctgc aactagccac agaaaagatg aacctttttt      3840
     tgtctaaaat tgctgagaaa cttaacaacc taggtatgat aatcaattca gataaatgtg      3900
     caactataat ttttactaat aagttccatc ctaacacaaa tatctcaatt aacaataatc      3960
     ctatcgaagt aaaggctttc cataaatttt taggtatcca gattgatcat aaactaaact      4020
     ataaaacaca cattgacgcc actgtagtta aggctaaaaa gaagataaac attttgaaaa      4080
     tggtaggaaa aagaaaaaat ggagcacatc cagaaacaat gttaaaagta gctaaagcta      4140
     tagtacaacc acatttggat tacggactat cgataattgc taaagcatca aaaacagttt      4200
     ttgctaaact agaaacagta caacacttat atataagaac ctgtatgaga tttctgagat      4260
     cgactcccaa ccatgtgata ctagcagaaa gtggcatatt acccttgaag gagagggcag      4320
     aatacttaac gttaaaagaa ataattaaaa cattatacta tcaaaactct ccattgacta      4380
     aattcataaa atctttcatt acatcagaag atttaccaac tcaatgttct tatttagaaa      4440
     ggatagcatc aatcaacaac taccatttaa ttcaactagg acctaaaata ccatttgaaa      4500
     aaacaacaaa attaaaggtt tttacagaga tcgataattt gaagaagaaa gaaacaacaa      4560
     tagctgttca aagacagatg acaatagaac taatatcaca taaatacaaa aacgattaca      4620
     aaatatttac agatggttcc aaaatagatg ggaaagcagg atacggcatt tatgatagta      4680
     gagagaaaat atcatatagt ggaagattaa aaacacaatt tacaataatg agtgcagaaa      4740
     tatttgctat tttgaaagca gtagaatact taatgacaaa aaatgtaaaa aatgcggtta      4800
     ttttaacaga ttccaaaagt gctgccattc tcattaaaaa taacacaaca aacgacaact      4860
     ttctagttgg aaaactgatt agagaaataa acaaatctca gatagagaag ttaacaatac      4920
     aatggatacc gggacacgca gggttaatag gcaacgaaag agcagattta gcagcaaaat      4980
     tagggacaaa taaacagcag attgaaaatt atccgttaac taaagatgat ttaattttga      5040
     atttaaaaat agaaacaaaa tgttattgga accaacgata taaaataatt tcagaggaaa      5100
     aaggtattta tcactacatg attgatcaaa atgttcgaag taagccatgg ttttcagatt      5160
     tcaaactttc aacacaacac acaataacta taaatcgact aaggactgga catttggcca      5220
     ctaaagacag actaaacgca tggggactcg ttccgaacga caaatgtgaa cactgtaatg      5280
     ttaaagaaga tatcatccac attttacact actgctccaa gtttgaccat attcgtcgcg      5340
     aatatccatt actgcaaaat aaggaagact taataaccat tctagctggc acaaacttta      5400
     aaaaaatcaa ggaaatagct aaatttattg gagaaactgg aactaatgtt tgagttgggg      5460
     aactgcgtta tggtaatttt tactatgatg tgacgtttac atagtgcacc cggcactgaa      5520
     attgaagaaa aattagcttg aaacggtcgt ttagttaaga cagtgacgag ttgtagtcac      5580
     acatacaaga cttggttgtt atggaccaga aggtctgcac caaaaagcga gaaaagaaaa      5640
     aaaaaaa                                                                5647
//
ID   Outcast-19_AAe repbase;    DNA;    INV; 5709 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-19_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5709
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1433-1433 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 11 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1809
FT                 /product="Outcast-19_AAe_1p"
FT                 /translation="MSQDSDSADARGGDDPPIENSDTFDSANEEMEMNIQL
FT                 KRTGISDSDSNEEVDKNVIKRMKSNTGAYKKTNTEKQIEVIDKNEQEFQQV
FT                 NRRKRKDKTKDDKVYDDGWIKNSIYTTFFIEPKLQDEQNKNDQNKSKRIHV
FT                 MEVAKILHNIEVKNYKSLTVAGKNRFKVTFDKPKQAEALINSKLLADCFKY
FT                 NVYVPNMFKQTIGVVRNIPPSITEEEIQANIVSNKKIQKIERIKRMINKEL
FT                 ISTYSVKIFVEGEKLPEEITLYGIPAKVEVYIFPLRICFNCWRYGHKAKAC
FT                 KAKIRCKLCGLEHSDKDCQSAIKKCVHCNGEHIANDYNCPERHRQDQIRTA
FT                 MAKMKLTFSEASKQYARPNRSQQIRLQSQTEFPPLNPIPNLRPNLNSSNVS
FT                 PRVQSVSKVIKTNPIIHKNVFPQPEIVEEPIHEFKENPYKVTEIEKLKQQL
FT                 KNEIIIELNNSGVFNKIKKIQDLIKVQTSKDVNDWNSDLLLININEELGSI
FT                 LNTPF"
FT   CDS           1858..5493
FT                 /product="Outcast-19_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MANVTRDLQILQYNINSIRPSETRSLLSNFLTKNKVD
FT                 IAILSEIWLKPDEDIKFNGYNFPKITRSKGYGGVGLLVKNDLAFTEIKLPE
FT                 LNPIEVIAIKILNTIEPIIIFSVYIPPPPINNNQLKDPLKQLLKFIDNLKA
FT                 HTILGGDLNAHHPTWNSSNNICPRGELLINLLDDSDLLVLNDGSPTLIKPP
FT                 NTIPSAIDLTLATPQIAAKIDWEVLDEELSGNHKMIFYKLLDSVRFIPYKQ
FT                 IVVNKKKAISLINNISVDIIENSNDLQKKLNECINQSLYNKTEYKKVPKKW
FT                 WTSEIDNLLKEKNDKLKKYYKNLTINNFLDFRRAKAKLKSVIRREKRKSYK
FT                 ELINELTPNLPSKMLWNTVRMLSGGFRKKDNIILMNNEQLAQKFIDINFPP
FT                 IDEPIKYTPKTRSTISVQISVADFLKILKIKKDSSAPGNDYISYHILKQLN
FT                 PLFIDKIVDILNQVLKTRSMPDDWRTVKIVPIHKPGKQQLDPLAYRPISLI
FT                 QIFLKSINILVKKKIESYIESNNIIPKCSFGFKKRSSAVNCVNFLISKIQE
FT                 TKRNNLIPVVTFLDLSKAFDNVDISILLEKLASTGIASDLVDWVYFYLKER
FT                 KATITLQNGIEISAITNKGLPQGCPLSPLLFNLYTAEIHQLADNDVIFFQF
FT                 ADDFAILIIARNISEATSKMNNILDKVQTTLSKLKLKVNPEKSTTICFTNK
FT                 FQDNLNIKIDNNNIKTEPYQKYLGIWIDHKLSFKKHITETVFKIRRKTNVL
FT                 KMISKKNGGAHPQVMLQINKSLVRSHIDYGISIYGSACKTDLNRLQVAQNI
FT                 GLRLSLRLLKSTPNHVVLAETGEIPVDLRANILALKETTKTLYFRNSPLVE
FT                 TLSSIISSDRDFKHLTFLENNATLNNFLLVQLCAMNNAIPNFDTNQLEIQI
FT                 NLKTNSKNNTNKKVLKSIATQIILDNYSDFYKIYTDGTKTSEGVGCGFYDS
FT                 QMLISVSHKLNPLFSIANAELIGILEAIKYAYLKGEKKICILTDSKSGCQM
FT                 ILNGRQLENYIVNEIYNFLCKSDIIKVIVQWIPSHIGILGNERADTAAKLS
FT                 LNKQSVLPFGLTLGDTILACKKSILEDWNSRYRFISEEKGIQHFKIMNSVS
FT                 TKPWFYKMSFNTVDIVRLSRIRSLHTATKERLHSWSLVPSSLCESCNVVED
FT                 LSHILFKCTKYNRIRNKYQILINKTDIIEIAKSKSYTEYKQITKFLEEIKI
FT                 SV"
XX
SQ   Sequence 5709 BP; 2223 A; 871 C; 889 G; 1726 T; 0 other;
     cattctctct tgaactgttg tgatcgcaag ttcgaagttt tgcttggtga accatcaagt        60
     cgcgacacgt ttttgataga aattcttaca gagaaaaaag tgcttttgat tttagctttt       120
     ttagtgatta agtgattggc ttttaactaa attgatttag attaagtgaa gagtaaaaga       180
     gttccattag tttttatttc ttttagaggt aagtactttt tgtaagactg ttcatagatt       240
     tattcctatt ttaaggttag gttaagtgca tccgattagg aggtgggatt cgatgaatcc       300
     accgtaatga gtcaggactc agatagtgca gatgcaagag gaggagatga tcctcctatt       360
     gaaaattcag acactttcga ttcggcaaat gaggaaatgg aaatgaacat acagctgaaa       420
     cgaacaggaa ttagtgattc tgactctaat gaagaagttg acaaaaatgt aattaaaaga       480
     atgaaatcaa acacaggtgc ttacaaaaaa acaaatacag aaaaacagat tgaagttatt       540
     gacaaaaatg aacaggaatt ccaacaggtg aacaggagga agaggaagga taaaactaaa       600
     gatgacaagg tttacgatga cggttggatt aaaaattcaa tttacacaac ttttttcatt       660
     gaaccaaaac tacaagatga acagaacaaa aatgaccaaa ataagagtaa acggattcac       720
     gtaatggaag tagcaaagat cttacataat attgaggtta agaattacaa atcgctgaca       780
     gttgcaggca aaaacaggtt caaggtaacg ttcgataaac caaaacaagc tgaggcatta       840
     attaattcaa aacttttggc tgactgtttc aagtacaatg tttatgtccc caatatgttc       900
     aaacaaacca ttggcgttgt caggaatatt ccaccgtcaa ttaccgaaga ggaaattcag       960
     gcaaatattg tctctaacaa gaagattcaa aagatcgaaa gaattaaaag aatgataaat      1020
     aaagaactga tctcaacata ttcggtaaaa atttttgttg aaggcgaaaa acttccagaa      1080
     gaaataacac tgtacggtat tccagcaaag gtagaggttt acatatttcc gctgagaatc      1140
     tgtttcaact gttggcgcta tggccacaag gccaaagcat gtaaagcgaa gatcagatgc      1200
     aagttatgtg gacttgagca tagcgataag gattgtcaat cggcaatcaa gaaatgtgta      1260
     cattgtaatg gtgagcacat cgcaaacgat tacaattgtc cagaaagaca cagacaagat      1320
     caaattcgaa cagctatggc taagatgaaa cttacttttt ctgaagcttc taaacaatac      1380
     gctagaccga acagatctca acagataaga ttacaatccc aaaccgaatt tccacccctc      1440
     aatccaatac ctaacttgag acctaaccta aacagttcaa atgtttctcc aagagttcaa      1500
     tctgttagca aagtcattaa aaccaaccca ataattcata aaaatgtttt cccgcaaccc      1560
     gaaatagttg aagaaccaat ccatgaattc aaggaaaatc cgtataaagt aacagaaata      1620
     gaaaaactaa aacaacaatt gaaaaacgaa ataataattg aactgaataa ctctggtgtt      1680
     tttaataaaa tcaagaaaat acaagattta atcaaagtac aaacaagtaa agatgtgaat      1740
     gattggaatt ccgatttact tttgattaac attaatgaag aactcggatc aatcctgaat      1800
     acaccgtttt aattaaaaat cattctcaat ttcttcatcc agttttaatt ttcaaaaatg      1860
     gccaatgtta caagagattt acaaatctta caatataata ttaacagcat tcgcccatcc      1920
     gagacaagat cgcttctctc aaacttccta acaaaaaata aagtagatat tgctattctt      1980
     tccgaaatat ggcttaagcc tgatgaagat atcaagttta atggatataa ttttcctaaa      2040
     ataactagat ctaaaggcta tggtggagta ggtcttttag ttaaaaacga tttagctttt      2100
     acagaaatta aattaccgga gttaaatcct atagaagtaa tagccattaa aattctcaac      2160
     accattgaac cgattatcat tttttctgtt tatattccac ccccaccaat taataataat      2220
     caattgaaag atcctctgaa gcaacttttg aaatttattg acaatttaaa agcccacact      2280
     attttgggtg gtgatctgaa tgcacatcac ccgacttgga attcatctaa taacatctgt      2340
     ccacgaggtg aattattgat caatctgcta gatgacagtg atttattagt attaaatgac      2400
     ggttctccga ctttgattaa acctccaaat accataccat ctgcaataga tttaaccctt      2460
     gctacaccac aaattgcagc aaaaattgat tgggaagttt tagacgagga attgtctggt      2520
     aaccataaaa tgatttttta taaattatta gattctgtaa gatttattcc ttataaacaa      2580
     atagtagtta acaagaaaaa agccattagt ttaattaata atattagtgt tgatataatt      2640
     gaaaattcaa atgatttgca gaagaaattg aatgaatgca taaatcaatc gttatataat      2700
     aaaactgaat ataaaaaagt cccaaagaaa tggtggactt cagaaattga taatttacta      2760
     aaagagaaaa atgataaatt aaaaaaatat tacaaaaatt taaccattaa taatttttta      2820
     gattttcgta gagcaaaagc aaaacttaaa tctgtaatta gaagagaaaa aagaaagtca      2880
     tataaagaac taattaatga acttactcct aacttgccat caaaaatgct ttggaatacg      2940
     gttagaatgt taagtggtgg tttccggaaa aaggataata ttattttaat gaacaatgaa      3000
     caactggcac aaaaattcat agacataaac tttccaccaa tagatgaacc aattaaatac      3060
     actccgaaaa caaggtcaac gatttcagtt caaatttcag tggcagattt tctcaaaata      3120
     ttaaaaatta aaaaagactc gtcagcccct ggtaatgatt atatctcata tcatatttta      3180
     aaacagttaa atccattgtt tatagacaaa atagttgata ttttaaacca agtattgaaa      3240
     actagaagta tgcctgatga ctggcgaaca gttaaaatag ttcccattca taaaccagga      3300
     aaacaacagc tagatccgtt agcttatcgt ccaatttcac taattcaaat ttttcttaaa      3360
     tctattaata ttttagtcaa aaagaaaata gaaagttaca tagagagcaa taatattatt      3420
     cctaaatgtt cttttggctt taagaagaga tcatctgcag taaattgcgt aaattttcta      3480
     atatctaaga tacaagaaac gaagagaaat aatttaattc cagttgtaac atttcttgat      3540
     ttgtcaaaag cttttgacaa tgtagatatt agtatattat tagagaaatt agcttctaca      3600
     gggatagctt ctgaccttgt agactgggtg tacttttatc ttaaagaaag gaaagccact      3660
     atcactttac aaaacggaat agaaatttca gctattacta ataaagggct ccctcaaggg      3720
     tgccctttat caccattgtt atttaattta tatactgcag aaatacatca attggcagat      3780
     aatgatgtaa tattctttca atttgctgat gattttgcaa tattaataat agccagaaat      3840
     atttcagaag ctacgtcaaa aatgaacaac atccttgata aagttcaaac tactctatcc      3900
     aaattaaaat taaaagtaaa tccggaaaaa tcaactacaa tatgctttac aaacaaattt      3960
     caagataatc ttaacattaa aatagataat aataacatta aaacagaacc atatcagaaa      4020
     tatcttggta tatggattga ccataaatta agttttaaaa aacatattac agaaacagtg      4080
     tttaaaatca ggagaaaaac aaatgttctt aaaatgatca gtaagaaaaa cggtggtgcg      4140
     cacccacaag taatgcttca aattaataaa tcattggtaa gatctcacat agattacggt      4200
     atttctatat atggttctgc ttgtaaaaca gatttaaata gactccaagt tgcccaaaat      4260
     ataggtctca ggttgtcatt gcgattatta aaatcaactc ctaatcatgt tgtgttagcg      4320
     gaaaccggag agatacccgt agacttgaga gctaacatac tagcacttaa agaaacgact      4380
     aaaaccctat attttagaaa tagcccatta gttgaaacat tatcatcaat tatttcgtca      4440
     gacagagatt tcaaacactt aacttttctg gaaaataatg ctaccttaaa taatttccta      4500
     ttagttcaac tttgtgctat gaataatgca attccaaatt ttgatacaaa tcagttagag      4560
     atccagatta atttaaaaac aaattcgaaa aacaacacta acaaaaaagt tttaaaatcc      4620
     attgccactc agattatttt agataattat tccgattttt ataaaattta cactgacgga      4680
     actaaaacta gtgaaggtgt aggatgtggt ttttatgatt ctcaaatgtt aatatcagtt      4740
     agccataaat taaatcctct tttttcaata gctaatgcag aactaatagg aatactggaa      4800
     gctatcaaat acgcttatct gaagggtgaa aagaaaatat gtattcttac cgattctaaa      4860
     agtggatgtc aaatgatttt aaatggtagg cagttagaaa attatattgt aaacgaaatt      4920
     tataattttt tatgtaaatc agatatcatc aaagttattg ttcagtggat acctagtcat      4980
     ataggtattt tagggaatga acgtgcggat acagcagcaa aacttagttt aaataaacaa      5040
     tcagttcttc cttttggttt gacattgggt gacaccatac ttgcttgtaa aaaatcaatt      5100
     ttagaggatt ggaatagtag atatagattt atatcagaag agaaaggtat tcaacatttt      5160
     aaaattatga attctgttag cactaaaccg tggttttaca aaatgtcatt taacacagta      5220
     gatattgtta gactttctag aattagatca ctacatactg ccactaaaga gagactacat      5280
     agctggagtt tagttccatc ctcattatgt gaatcttgta atgttgttga agacctatcc      5340
     catatcctat tcaaatgcac aaaatacaat agaattcgta ataaatacca gatattgatc      5400
     aataaaacag atataattga aatagctaaa tcaaagtctt acacagagta caaacaaatt      5460
     accaaatttt tagaagaaat aaaaataagt gtttgaacta attgtttaat tacgtagaga      5520
     aaatttattt taatttacct gattcgatgt gttttatttt ttcgggaatc actttaattg      5580
     cgacaacaaa gataaaatca ttatgctttt tacgcggttt cgttttgtca cttgactaat      5640
     ttaaacttga caacacctgg ctaaatggat caacttggtc tgtgccaaaa gagagaaaaa      5700
     gaaaaaaaa                                                              5709
//
ID   Outcast-1_DAn repbase;    DNA;    INV; 5786 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5786
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 396-396 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           225..1751
FT                 /product="Outcast-1_DAn_1p"
FT                 /translation="MAHSARGKTLSSDAASTKKLSQSFKKRKPNDSASAKM
FT                 DLEKIDLEEMDILESSEKNHTTCSQPAPQTIFTDPDLSYHIDNDISDTPKQ
FT                 VPLTYNNSHKGPYIVYIDKHTNEDENRKPINALELNASIFKLKLKDIVKVN
FT                 KIGFGRCKAECKTAKAANELINSDLKKEGYDPKILKHFIFKTGIIFQIPTK
FT                 FTLDELKEFIISPVPIHEIIRVNRKNENKEFVPTSRVKIIFEGSQIPEEIN
FT                 FLYTKVKVETYIPFSQCFRCFRFGHFAQHCKQTEEKCRNCSLPHPREEVCT
FT                 TIKCVNCNHPHTATSLECPARKKAFAIQKCMTSQNLSRVEVRIRYPALFDK
FT                 LTPSPPEIFNAKDFPVLQTPRSSAIPVLQDNAKLAAESIHRLLPYNKIAKN
FT                 VQHRVNESKNSQGTIADWRKVIKEHEIALEERFVSLKNTPSPSQLAIPSST
FT                 SVYHNSALETAENSLINISSEIASFLLANNSETPVNIRSFLESIKTKIAKT
FT                 NTEIDLKKINLST"
FT   CDS           2007..5459
FT                 /product="Outcast-1_DAn_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonulcease H."
FT                 /translation="MCNLANYNFICKPRCDGYGGVGIYVRKCIKYKILTFD
FT                 TNNVETIAITTKNLKRNLNIFSVYCPPNTNVNDFKAGCKDILSTAARLKDP
FT                 SLVGGDLNAKSPIWGSSTQDSKGQALEQILLSTGFCCINNGSHTYSPNPTY
FT                 SSVPDVTFINKNTFSANWSASNSKISNSNHFPITIEISNWSASTNVLRTIQ
FT                 PKVLEDFSKINITSIDNLCSLTKDIMEKNTILLDERNKYIPKKYWDETCEK
FT                 LFRLRNASRQKYYKTKLISDAELFRKYNKKLNNYFYKVRKINMNMLSDSLS
FT                 NPQSSKEFWQKIKSLKAYKQVKTTSKLFDDEDHLTFLQHVSTSPDTTGCIY
FT                 YDFPQIELETINKIYFSPCDVLCFLKSRNPHSSKGLDKISYNMLLSLPPEQ
FT                 VXKFTSMLNDIFNEGKIPEVWRRIKIVPVPKKNLDSSVITNNRPICLLSVV
FT                 FKCXESLVKNKLEEHIAINSLLPDRSYAFRRNHSTAHCINDVINNVANLKA
FT                 KGFHVVAAVLDLSKAFDCVNISILCKVLCDLGFNHRYINFIIEFLKKRILV
FT                 MGKTEVTVSKGVSQGSCLSPILFNLYTAVLHSISDHQSLIFQYADDFFLIS
FT                 YSKNFSDARNILEQKVNNFNNICDTINLTFNPLKSSVIHFNNKRRTLGIMC
FT                 NNLLIKEVDHVCYLGRTICTNNSTIKHIRHTLSKANQTNMFLNMLSGCRFG
FT                 IHPGKAINLFKAFVRPKYEYACSSFANISKTVSSAVQVHANLYLRKSLGLM
FT                 KSTPVNIIYHMAGELPPAYRMKFATAKELAKIFAFNLPAASLLQNNFSAKN
FT                 TSYIKTYLEFKDIYDSITHVDSFTHKPRMLTFDIDFFKGVCSNKNSSNPDL
FT                 VNNLMKEKLRILSDKSYDVIFTDGSVKDNFTGSAFYHINSNTTKSFYMNKK
FT                 LSSLTAELTALEKAIEFAIEQQLVKVAILTDSLGALQTLKNCHSSNRIGSE
FT                 ILKKVNSNQSMLYLQLHHVPSHVNIKGNEIADNAAKNANSSGTLINFKYEI
FT                 NDAINHIYNIIKIEWEREYNAFCLEKNRGYCTLFPYVTHKPWYSSKHCNLN
FT                 RLQVKQINRILSGHSFDRYTLYKLKVYDSPNCDCNLNTIEDISHILLKCTK
FT                 YNNIRRRFPLLLKYNDIYQFFKQEPIEKYNAITDFIEMAKIDL"
XX
SQ   Sequence 5786 BP; 2040 A; 1207 C; 863 G; 1667 T; 9 other;
     tactcsagtc tgaatcaaga cctggtccag gcaacacctc tcggcaaaac cctaaatctg        60
     gtgaacttat ccaaaaaaaa aaaaaaaaaa gtgaagtgca aaattaaaat tatttatttt       120
     agtaactgtc atagctagta cctaaaaaaa aaaaaaaaaa aataaataaa actacaagtg       180
     aagcgaatca tcctataacg ggggtccgtc cccttaattc aaaaatggcc cactcagcca       240
     ggggcaagac cctgagctct gatgcggcat ccactaaaaa attatcacaa tcgtttaaaa       300
     aaagaaaacc gaacgattcg gcatcagcaa aaatggacct tgaaaaaata gacctggagg       360
     aaatggacat cttagagtct tcagagaaga accacaccac ctgcagccaa cctgctccac       420
     agaccatttt taccgacccg gacctatcct atcacattga caatgatatt tctgatactc       480
     caaagcaagt accgttgaca tataataata gtcataaagg gccatacatc gtctatattg       540
     acaaacacac taatgaagac gagaaccgaa aacccataaa tgctttagaa ctgaatgctt       600
     caatttttaa gcttaaactt aaagacattg ttaaagtaaa taaaattggc ttcgggcgtt       660
     gtaaggcaga atgtaaaaca gctaaagctg ctaatgagct tattaattct gatttaaaaa       720
     aagagggata tgaccccaaa atattaaaac acttcatttt taaaactgga attatttttc       780
     aaattcccac aaaattcaca ttagatgagt taaaagaatt tattatttcc cctgttccta       840
     ttcacgaaat tattagagtt aatagaaaaa atgagaataa agaatttgtt cccacgtcca       900
     gggttaaaat aattttcgaa ggctctcaaa tccccgagga gatcaacttt ctttacacca       960
     aagtgaaagt ggaaacatac atacctttta gtcagtgctt caggtgtttt cggtttggac      1020
     attttgctca acactgcaaa cagactgaag aaaagtgtcg caactgctct ctccctcatc      1080
     ccagagaaga ggtatgcacg acgatcaagt gtgttaattg taatcacccc cacactgcga      1140
     cctccctgga atgcccagcg aggaagaaag catttgccat tcaaaaatgt atgacatcgc      1200
     agaatctctc aagagtagag gttagaatca gatatccagc cctatttgac aaactcactc      1260
     cttccccccc tgagattttt aatgctaagg attttcctgt acttcaaacc cccagaagtt      1320
     ctgcaatccc agtattgcag gataatgcaa aattggccgc tgagtctatt cacagactcc      1380
     ttccatacaa caaaattgca aaaaatgtac aacacagagt aaatgaatct aagaactcac      1440
     aaggaacgat tgctgattgg agaaaagtaa ttaaggagca cgaaatcgct cttgaggaaa      1500
     ggttcgtttc cctgaagaat accccttctc ccagtcaatt agctattcca tcttcaacta      1560
     gtgtttatca taactcagct ttagaaacgg ccgaaaacag tcttattaat atttcatccg      1620
     aaattgcttc gtttcttttg gcgaacaact cagaaacccc agttaatata agatcatttc      1680
     tagaatccat taaaacaaaa atagcaaaaa ctaacacaga gattgaccta aaaaaaatta      1740
     acctttcaac ttaaatactt aaatagacat ttgttcattg ttttgtgatt ttaaataatt      1800
     atagtaaaaa tttttttatt tttaggttaa attaatgcgt tttcttttct ttgtgttttt      1860
     tcttataatt caaaccaatt aaaatcctac aatataatat tcaaagtcta acgtcacaaa      1920
     acaacaaaca actcctggaa ctttttttaa ttaataacaa catagacata gccattttat      1980
     cagaaatttg ggttattaat aattccatgt gtaacctagc taattataat tttatctgca      2040
     aacctcgctg tgacggttat ggaggcgtag gcatttacgt taggaaatgt attaaataca      2100
     aaattctaac cttcgatacc aacaacgttg agaccatagc tattactact aaaaacttaa      2160
     aacgtaatct taatattttc agcgtttact gccctcccaa tacgaatgta aacgatttta      2220
     aagcaggctg caaggacatt ctgtctactg ccgccagact caaggatccc tcacttgtag      2280
     ggggcgatct taatgccaag tcacccatct ggggcagttc tacacaggac agtaaaggac      2340
     aagcattaga gcaaatcctt ttatcaactg gtttctgctg catcaataat ggatcccata      2400
     catattcccc taatccwaca tatagctccg tacccgatgt aacttttata aacaaaaata      2460
     ccttctccgc taactggtcc gcgtccaact cmaaaatatc gaatagcaac catttcccca      2520
     taacaattga gatttcaaac tggtccgctt ccacaaatgt cctcagaacc atacaaccca      2580
     aagttcttga ggatttctca aaaattaata ttacctctat tgacaacctt tgtagcttaa      2640
     ctaaggacat watggaaaaa aatacgattc ttcttgacga acgtaataaa tatataccca      2700
     aaaaatattg ggacgaaact tgtgagaaac ttttcagact gagaaatgcc agtaggcaaa      2760
     aatactataa aacaaagctw atttcagacg ctgaattatt tcgaaaatat aacaaaaaac      2820
     taaacaatta tttttacaaa gtacgcaaaa ttaacatgaa catgttatct gactcactat      2880
     ctaaccccca gtcctcaaag gagttctggc aaaaaattaa gtccttaaaa gcatacaagc      2940
     aagtcaaaac gacctcaaaa ctctttgatg atgaggatca tcttaccttc ctacaacacg      3000
     tctcaacatc cccggacacc acaggctgta tttattatga tttcccacaa atcgagctcg      3060
     aaactataaa caaaatatat ttctctcctt gtgatgtttt gtgttttctg aaatcccgaa      3120
     acccgcattc ttcwaagggt ctggataaaa tatcctataa tatgctactc tccctacccc      3180
     ccgagcaagt tsacaagttt acgtccatgc taaacgatat cttcaacgaa ggcaaaatac      3240
     cagaagtgtg gcgtagaatc aaaatcgttc cagtgcctaa aaaaaatcta gattcctcag      3300
     tgatcaccaa taacagacct atttgtctac twagtgtcgt attcaagtgt mtggaaagcc      3360
     ttgtaaaaaa caagctagaa gaacacattg caatcaatag cctccttcct gaccgatcct      3420
     atgcgttcag aagaaatcat tcgacagcac actgtataaa tgatgtcata aacaacgttg      3480
     ccaatctgaa agccaagggc tttcatgttg tagctgcagt cctagacttg agcaaagcct      3540
     ttgactgcgt taacatctca atcctctgta aagtcctttg tgatcttgga tttaaccatc      3600
     gatacatcaa ttttatcatt gaattcttaa agaaaaggat acttgtcatg ggtaaaaccg      3660
     aagttacggt tagcaaagga gtcagtcaag gaagctgttt aagtcccatc ctctttaatc      3720
     tctacactgc tgttcttcat tctataagcg accaccaaag cctcattttt cagtacgcgg      3780
     acgatttttt ccttatctcc tacagcaaaa acttctcgga cgcaaggaac atacttgaac      3840
     aaaaggtcaa taactttaac aatatctgtg atactatcaa ccttactttt aacccgttga      3900
     aatcgtctgt gatacatttt aacaataaaa gacgtacact aggtataatg tgtaataatt      3960
     tattaattaa ggaagttgat catgtttgtt atttagggag aactatctgt acaaataact      4020
     caaccatcaa acatattaga cacacgcttt caaaagccaa tcaaactaac atgtttctaa      4080
     atatgttaag tggttgccgt tttggcattc atcccggcaa agccattaac cttttcaaag      4140
     cttttgttag accaaaatat gagtatgcct gctcatcttt tgctaatatt tctaagactg      4200
     tttcatctgc tgttcaggta catgcaaatt tatatcttag aaaatctctt ggacttatga      4260
     aatcaacccc ggttaacatt atttatcaca tggcaggtga acttcctcca gcatacagga      4320
     tgaagtttgc gacagctaaa gagctagcaa aaatttttgc ttttaacctt ccggctgcct      4380
     cccttctaca aaacaatttt tccgctaaga acactagcta tataaagacc tacctagaat      4440
     ttaaagatat atatgattcc ataacacatg ttgactcctt cactcataaa cctaggatgc      4500
     taacatttga cattgatttt ttcaaaggtg tatgtagtaa caaaaattct tctaaccctg      4560
     acttggtgaa caatttaatg aaagaaaaac ttcgtattct ctctgacaaa agttatgacg      4620
     ttatttttac cgacggttct gttaaagata atttcacagg gagtgctttt taccatataa      4680
     atagcaacac aacgaagagt ttttatatga acaaaaaatt atcctcgctc actgcagaac      4740
     ttacagccct agagaaagcc attgagtttg caattgaaca acaacttgtc aaggtagcta      4800
     tcctgactga tagcttgggt gctttacaaa ccctcaagaa ttgccattct tctaatcgca      4860
     tagggtctga aatcttaaaa aaagttaact ccaatcaaag tatgctgtac cttcaactcc      4920
     atcacgttcc tagtcatgtt aatattaagg gaaacgaaat agctgacaat gctgcgaaaa      4980
     acgccaacag ctcaggaaca cttatcaatt ttaaatatga gatcaacgat gctattaacc      5040
     atatttataa tataattaaa attgaatggg aacgcgaata taatgccttc tgtttagaaa      5100
     agaacagggg ttattgcact ctatttcctt atgtcacaca taagccatgg tatagttcca      5160
     aacactgcaa tctcaataga ttacaagtta agcaaattaa caggatcctc agtggccatt      5220
     cttttgatag atacactcta tacaaactaa aagtgtatga cagccccaac tgtgattgca      5280
     acctcaacac catagaagac atctctcaca ttctcctgaa atgtacaaaa tacaataata      5340
     tccgtcgaag attcccgctt ctgcttaaat ataatgacat ctatcaattt tttaaacaag      5400
     aacccattga aaaatacaat gcaataactg atttcatcga aatggcaaag atagatctat      5460
     aagatacatt tactttattt aactaactat cggaatattg gatttaagta tcataatgca      5520
     ctaacataac aattcaccct cataatcata tggtcactct aaacaatcgt ttatcgtttc      5580
     atgtatcatc actatataca tatgtttata ccatcaacat caatgtataa ataatttgtt      5640
     tgcaaatctt taacaagttt ctcgaagttc ttaatttcac acataggcgt tggcgtttac      5700
     ccgtcttcac gggacggcca aggaaatctt ccccctcgtt gagctgggaa gtaacttaat      5760
     atcaaaaaaa aaaaaaaaaa aaaaaa                                           5786
//
ID   Outcast-1_DBi repbase;    DNA;    INV; 2872 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Outcast non-LTR retrotransposon from the Drosophila biarmipes
DE   genome.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2872
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 939-939 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2542
FT                 /product="Outcast-1_DBi_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="KNLKLFKQIKPSNSAISDSEHRDFLNQIATAPNTAMC
FT                 PDVSFSPDLLYRYTNSNFSARELLDFLNSRNPDSAKGLDNISYRMLLSLPL
FT                 SQIEKLVSLLNITLDNGFIPDQWRKIRVIPVPKKNLDSSIITNNRPICLLS
FT                 VTFKCLEGLIKLRMEEHINKNKILPPRSYAFRKNHSTAQCINDVINNIANL
FT                 KARGFHVTAAVLDLSKAFDAVNIPILGSKLVSLGFDHNHIYFIINFLSKRV
FT                 LTMGTAEITVNKGVSQGSCLSPILFNLYTAELHSLSNDHDSILFQYADDFF
FT                 LVCYDKVFSMAEEKLEQKVNRFMELCNINNLTFNPDKSATIHFNLRKKPLS
FT                 ILCNNIILKNVNSINYLGRVISSNNSSVQHVNKTISKSNQTNMFIQMLSGC
FT                 RFGVHPSKSLLFYKAFIRTRYEYACSSFSNISKSVQNNINKHANFHLRKAL
FT                 GLIKSTPINIIYNLAAELPPAYRIKFATAKELAKTFAHGLPSASLLSNSFV
FT                 AKNTSYSRIYAEFKNILDSIAPICPYSLSTRKISVDTNFFKGTCTNKKMAN
FT                 ETIILSLFKEKIRSLTSKNMEIIFTDGSVSENFTGGAFVHLNSNSIKSFYT
FT                 DKKLSSLTAELTALEKAIDFGISKKFSKIAILTDSLGAIQTIKNTNSKNCI
FT                 SQCILKKVINNPTLLSIEFHHIPSHSNIWENDLADTAAKNAKINGSFAPVR
FT                 WTLKDAINHMFAQIKQDWEREYSLFSLERNKGYSLLSPYTTSKPWFKNKEH
FT                 LFNRIETKTLNRILSGHAFDKYTLSKMKVYDNALCDSCNVNEDISHILLNC
FT                 SKYTPTRQNYPTLLKYNDIYRLLGNEPIENWTSITSFIRAANINI"
XX
SQ   Sequence 2872 BP; 992 A; 612 C; 415 G; 852 T; 1 other;
     caaaaatctt aaacttttta aacaaattaa accgtcaaac agtgcaatat ctgactcaga        60
     acatagagat tttctcaatc aaatagccac agctcccaac actgcgatgt gtcctgacgt       120
     atctttttct cctgatctgc tttatagata taccaactct aatttctcag cgcgtgaact       180
     tcttgacttc cttaactctc gtaacccaga ctcggctaag ggtcttgaca acatttcata       240
     cagaatgctt ctatctctac ccttaagtca aatagaaaaa ctggtatccc tgctaaacat       300
     tactttagac aatgggttta ttccagatca gtggcggaaa ataagggtta tacctgttcc       360
     caaaaaaaat ctagactctt caattattac caacaacaga cctatctgcc ttctaagtgt       420
     gacttttaag tgcttagaag gtttgattaa attgcggatg gaagagcaca ttaataaaaa       480
     taaaattctg ccaccaagat cctatgcgtt cagaaaaaac cattctactg cccaatgcat       540
     caacgatgta ataaataaca tagccaacct aaaagctcgt ggtttccacg ttaccgcagc       600
     ggttttagac ttaagtaaag cctttgatgc cgtcaatatc cctattctgg gtagcaaatt       660
     agttagtttg ggtttcgacc acaatcatat ttatttcatt ataaacttcc ttagtaaaag       720
     agttctcact atgggtactg cagagataac tgtaaacaaa ggagttagtc aaggtagttg       780
     tctgagtcca atcctcttta atttatatac agctgagctt cacagcttaa gtaatgacca       840
     tgacagtatt ctgttccagt acgctgacga cttctttcta gtctgttatg acaaagtctt       900
     ttcgatggct gaagagaaat tagaacaaaa agtaaatagg tttatggaac tgtgcaatat       960
     taataatctt acttttaatc cagacaaatc agccaccatt cattttaatc taaggaaaaa      1020
     acctttaagt atcttgtgca ataatattat tttaaaaaat gtaaatagta taaattattt      1080
     aggtagagtc ataagttcaa acaactcgtc tgttcagcat gtaaataaaa cgatctctaa      1140
     atcgaatcaa acgaatatgt ttattcaaat gctcagtggt tgccgcttcg gagtacatcc      1200
     aagcaagtca ctactctttt ataaagcatt tattagaact agatatgaat acgcctgctc      1260
     ctctttttca aacatatcaa aatcagtaca aaacaatata aataagcatg ctaatttcca      1320
     ccttagaaag gccttaggac ttattaaatc gactccaatt aatattattt ataatcttgc      1380
     agctgaactt cctccagctt ataggattaa attcgctaca gcgaaggagt tggccaaaac      1440
     gttcgctcat ggactaccat ctgcgtcgct tctgtcaaac tcctttgtag ccaaaaatac      1500
     tagttacagt agaatttatg ctgaatttaa aaatatcctg gatagtattg ctcctatttg      1560
     tccttactct ctgtccacac gcaagatttc agttgacaca aatttcttta aaggtacttg      1620
     tacaaataaa aaaatggcaa acgagactat aattctctct ttatttaaag aaaaaataag      1680
     aagtttaacc tcaaaaaata tggaaatcat cttcacggat ggttctgtgt cggaaaattt      1740
     tacaggmggt gcctttgtcc acttaaattc caattcgata aaaagtttct acaccgacaa      1800
     aaaactatcg tcgctgactg ctgaactcac agccctagaa aaagccattg acttcggtat      1860
     ttcaaaaaag ttctccaaaa tagcaatttt aactgacagt cttggtgcca tccagacaat      1920
     aaagaacacg aactccaaaa actgcatctc tcaatgcatt ctgaaaaaag tcataaacaa      1980
     cccaaccctg ctatccatag aatttcacca cattccaagc cattccaata tttgggaaaa      2040
     cgatctcgca gatacagcgg ctaaaaatgc taaaattaac ggctctttcg cacccgtcag      2100
     atggaccctt aaggacgcaa tcaatcatat gttcgcgcaa ataaaacaag actgggagcg      2160
     tgaatacagt ctgttctcat tagagcgtaa caagggttac tctctcctct caccatatac      2220
     cacttccaag ccttggttta aaaacaaaga acacctattc aaccgtatag aaacgaagac      2280
     tctaaacaga atcttaagcg gacatgcttt tgacaaatac acactttcca aaatgaaagt      2340
     ctacgataac gccctatgcg attcgtgtaa cgttaatgaa gacatttcgc atattttgtt      2400
     aaattgctca aaatatacac caacaagaca aaattatcca acactactta aatataacga      2460
     tatctatcgt ttacttggaa atgaaccaat tgaaaattgg acatcgatta ccagtttcat      2520
     tcgagctgct aatattaata tctaatacaa cacactccac actgctcatt taacacacta      2580
     taacaccatc cacgcttata ccaactcaca aaatctcaaa attaaaattt ctcacacata      2640
     ttgataacat tttcatcgct tatcgttcat cgtcatcgct catcgttcat tgtcatcata      2700
     acatcaccag aaactactgc acgatattta catagctgtc cattaaattt tgtttttctt      2760
     gaaatttaat ttcatacatt ggcagtggcg ttaacccgtt ccaacggggc ggccaaataa      2820
     ttcttccctc ttcacggaag gaagtaactt aatatttaaa aaaaaaaaaa aa              2872
//
ID   Outcast-1_DBp repbase;    DNA;    INV; 2175 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2175
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 724-724 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           97..2016
FT                 /product="Outcast-1_DBp_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTLKILQYNIQSLTANNNKHLLELFLVNNNIDIAILS
FT                 EIWIPNNSMCSLANYNFVCKPRADGYGGVGIYLKKHIRFRKIKCDINIEAV
FT                 GVCTTNLKNNINIFSIYAAPNPDTNSFEQGCNDLFSIASELNGTAIIGGDF
FT                 NAKSSIWGNNTLDARGXILENALLNSGFFCINNGDPTYSPNPSYFSTLDVT
FT                 FTNNNHLRFKWASVNSKISNSNHFPVLIEVDNVSASFNSYKYNHPKIIKDF
FT                 SNVHITSLDTLFTSSQNIHANNTIKLNGNNRYVPKKYWDEVCEKLFRLRNA
FT                 CRQKYFKSKLYTDAIAYINSNRKLNNYFYKMRKNNLNRLLDDLSDPTSMKD
FT                 MWGKIHSLKLYKQIKPSKSXFSDSDHHAFLSQIATAPNTXTCSDVIFPDDL
FT                 LYTNSISNFTYRELLVFLKSRNPDSAKGLDKISYRMLLALPTVQLENLVSL
FT                 LNSTLDQGNIPDNWRRIKVIPVPKKNLDSSVITNNRPICLLSVIFKCLEGL
FT                 IKSSMENHINRHDILPPRSYAFRKNHSTSQCINDVINTIANLKARGFHVTA
FT                 AVLDLNKAFDAVKIPILGRKLVNLGFNHSHIKFIINFLNKRILTLGKAEVT
FT                 VDKGVSQGSCLSPILFNLYTLELHNLSNNHDSTLFQYADDFF"
XX
SQ   Sequence 2175 BP; 737 A; 403 C; 313 G; 719 T; 3 other;
     aaattgattt aattaaaatt aaccaatcgt tacaatagtt ctttaacgtt gcttgtctat        60
     atacttttct taaaaaaaaa aaaaaaataa ataaaaatga ctcttaaaat cctccaatac       120
     aatattcaga gcctaactgc taataacaat aaacatttgt tagaactatt tttagttaat       180
     aataatatag acatagcaat tttgtcagaa atctggattc caaacaattc tatgtgtagc       240
     ctagctaatt ataattttgt gtgtaaacct cgtgccgacg ggtatggagg cgttggtatt       300
     tatttaaaaa aacatatacg ttttaggaaa attaaatgtg acattaatat tgaagcagtt       360
     ggtgtctgta caaccaatct aaaaaacaat ataaacattt ttagtatcta tgccgcaccc       420
     aatcctgaca ctaattcttt tgaacaaggt tgcaacgatt tattttctat tgcgtctgaa       480
     ctgaacggta ctgctattat aggtggcgat tttaatgcca aatctagtat ttggggtaac       540
     aacacgcttg atgccagagg agkcatcttg gaaaacgctc ttttaaattc aggatttttc       600
     tgcattaaca atggcgatcc aacctactca cctaatccgt cctatttctc tacccttgat       660
     gtcactttca caaataataa tcatcttaga tttaaatggg cttcagttaa ttctaaaatt       720
     tcgaatagca atcactttcc ggttttaatt gaagtggata atgtttcggc ttctttcaac       780
     tcttataaat ataatcaccc aaaaattatt aaagatttct caaatgttca tattacttct       840
     ctagacaccc tttttacttc ttctcaaaac attcacgcca ataatacgat aaaattaaat       900
     gggaataata gatacgttcc taaaaaatat tgggatgagg tttgtgaaaa actgtttagg       960
     ctaagaaacg cgtgcagaca aaaatatttt aaatccaagc tttacacaga tgctattgcc      1020
     tatattaaca gtaatagaaa acttaataat tacttttata aaatgagaaa gaataaccta      1080
     aacaggcttt tagatgattt atctgaccct acctcaatga aagatatgtg gggaaaaatt      1140
     cattccctta aactttataa acaaataaaa ccttccaaaa gtwcattttc tgactcggac      1200
     caccacgctt ttcttagtca aatagccaca gctcctaaca ctgmtacttg ttctgatgtt      1260
     attttccctg acgacctact ttacacaaat tctatctcaa acttcacata tcgtgaactt      1320
     cttgtctttc tcaaatcccg taaccctgat tctgctaagg gactcgataa gatatcatat      1380
     agaatgctcc tagccttacc tactgtgcaa ttagaaaacc ttgtttcctt gcttaattct      1440
     actttagacc aaggtaatat tccagataat tggcgtagaa taaaagttat tcctgtgcca      1500
     aagaaaaacc ttgactcttc tgtaattaca aacaatagac ctatttgcct tctaagtgta      1560
     attttcaaat gtttagaggg cttaattaaa tcgagtatgg agaatcacat taatagacac      1620
     gatattctcc ctccaaggtc ctatgctttt aggaaaaacc attcaacatc gcaatgtatc      1680
     aatgatgtga tcaacactat agctaattta aaagctcgtg gcttccatgt tacagcagca      1740
     gttcttgatt taaacaaagc gtttgacgcg gtcaaaattc ctatcctagg tagaaaatta      1800
     gttaatttag gttttaacca ctcccatatt aaattcatta tcaatttcct taataaaaga      1860
     attttaactt tgggcaaggc agaggttaca gtcgacaaag gggttagtca gggaagctgt      1920
     cttagcccaa ttctatttaa cctttacact cttgagcttc ataatctaag caacaatcat      1980
     gacagtactc ttttccagta cgcggacgat tttttttagt ctgctatgac aaggtttttt      2040
     cgttggctga atctaaatta gagcagaaag tgaatctttt tatggaaatg tgcaatttaa      2100
     tcaatctttc atttaatgca aataaatcag ccactataca ctttaacctt aggagaagac      2160
     ctcttaacgt acagt                                                       2175
//
ID   Outcast-1_DEl repbase;    DNA;    INV; 3758 BP.
XX
AC   .
XX
DT   01-NOV-2011 (Rel. 17.04, Created)
DT   09-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DEl.
XX
NM   Outcast-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3758
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 563-563 (2012).
XX
RN   [2]
RP   1-3758
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-JUN-2021).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2]: Solo-LTR insertion is removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..426,445..570,546..1736,1736..2062,
FT                 2008..2463,2447..2821,2870..3433)
FT                 /product="Outcast-1_DEl_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="SFSEFTAKHCKGQKKCFKCGSVHKEEEACTKVECANC
FT                 KESHVATSPSCSARKKAYAIQKTRTLENLTIQETRKKYPSLFRRERLRWKI
FT                 SYLSPRHHGKLIRQTVLLIHQQNQPKVSFYKLICQYNQRNGVNNLIPFLRL
FT                 VPMMRYEKERSRYSEIRDFVNKSNADLDALQIASSFESHLQTVIPISPSNC
FT                 NTVMKILQINIQSLNKLNSKHLLNMYLINNNVDIALLSEIWVKDNTDCSIP
FT                 DFKFHCKPRDDGYGGVGIYIRNNIKFRILKSFDLVENIGVQTLNLKKNVHI
FT                 FSLYIPPTTTVTNLKQGLKNIFNYASTLANPTVIGGDFNAKSTTWGSLNSD
FT                 AKGHTLERVALDAGFVCLNDGSPTFSLSPVQFSVLDLTFCNRRDLNISWSS
FT                 SKVKITNSNHFPIEIVINNVSTEVNTFKILHDKVAIEFVNTNFTGIEASIK
FT                 SNTVKITGKNNYEPKKWWCKEAEKLFRLRNAARQKFYRSKKFEEAEKSLQN
FT                 YISNKRKSDFQSFVNEISESPKYKQIKRTGNTCSEEEDEQFLHVIKSTPST
FT                 IAVPPNPNRHQXFNVRNPFELGDFLEFIASRKPDLSKGTRQVIVSNDTNAL
FT                 SCKEIRIIYLINNVWLSGQIPESWREINVVPIPKRNADSSIIDNYRPICLL
FT                 SVLFKITEGLIKLKLDHHISQNRLLPNRSMHLGNTDPHLCAAASEQIYAFR
FT                 KHRSTSMCINDLINKVQALKAEGLQVVAACLDLQKAFDCVDIGILETKLQN
FT                 LNFNQHHVAWLTDFLRKRVLVKGKSRLEVNRGVCQGSCLSPTLFNLYTANL
FT                 HSLNDENCEMFQYADDFFLVCFDATFSGARDILLEKNSGVKKIAEFEIECS
FT                 ELNLSFNPSKSSVIHFNLRKQSLQVFYKGIPIKDVVQIKYLGRIVAANNSP
FT                 CAHIEQAISSANKTCAFLKLLSGCTFGVNPRKGLLLYKAFARSRLEYACFS
FT                 HLAKCPKQLWIKSVHRYRSYITWQRSFRPSTEFVLNCDPLPVHNSKIRVDL
FT                 DFFKGTAKNKCDMNTASILQIFKEKMGSLRNRDFDIIFTDGSVTDRYSSAA
FT                 FLVNSSNFTASFYTNKILSSLSAELLAIDKALDHVVSVGITRVAFLTDSRN
FT                 SAIAILNSSHDNYKYNYTRQNYPILKKLHDVYNFFKHEPTNSCQIII"
XX
SQ   Sequence 3758 BP; 1294 A; 777 C; 698 G; 988 T; 1 other;
     agtttttcag agttcaccgc aaagcattgc aagggacaga agaaatgttt caagtgtggt        60
     tctgtgcaca aagaagaaga agcatgcaca aaagttgagt gcgccaattg caaggaaagc       120
     cacgtggcta catcgccatc ttgttcagcc aggaagaaag cgtatgccat tcagaaaact       180
     aggactttag aaaacctaac tatacaagag acgcgtaaga aatacccatc cctatttcgc       240
     agagagcgcc tgcgatggaa gatcagttat ctttccccac gccatcatgg caaattaatc       300
     aggcaaacag tactcttaat tcatcagcag aatcagccaa aggtatcatt ctataaactc       360
     atatgccagt acaaccaaag gaacggggtg aacaatctga ttccgtttct cagacttgtt       420
     ccaatgtagc tcaggacaaa ctaaatgcgt tatgagaagg aaagaagtag gtacagcgag       480
     atcagggact tcgtgaacaa gagcaacgcg gatttagatg cacttcagat tgccagttca       540
     tttgaatctc accttcaaac tgtaataccg taatgaaaat tcttcaaatc aacattcaaa       600
     gcctgaacaa acttaacagc aagcacctac ttaatatgta tctaataaat aacaacgttg       660
     acatagcttt actctcagaa atctgggtta aggataatac cgattgtagt atcccagatt       720
     tcaaatttca ttgcaaacca agagatgacg gctatggcgg cgttgggatt tatatccgca       780
     acaacatcaa gtttagaatt ctaaaatcat ttgatctagt agaaaacatt ggagttcaaa       840
     ctcttaatct taagaagaat gttcatatat ttagcttata tatcccccca accaccacag       900
     taaccaatct gaaacagggc cttaaaaaca tttttaacta cgcgtctaca ttggccaacc       960
     ccaccgttat tggaggtgac ttcaatgcga agtcaaccac atggggcagc ttgaacagcg      1020
     atgccaaggg tcacacattg gaaagagtag cgcttgatgc tggttttgtt tgcctaaatg      1080
     atggttcccc aaccttctca ctcagtcctg ttcaattctc ggtactagat ctcacctttt      1140
     gtaacagaag ggacttaaat atctcatgga gttcctccaa agttaaaatt accaacagca      1200
     atcatttccc gattgaaatt gttattaata atgtcagtac tgaagtaaat acttttaaaa      1260
     ttctccacga caaagtggca atcgaattcg taaacacaaa ctttaccggt atagaagcgt      1320
     caatcaagtc aaacactgtg aaaataacag ggaaaaataa ctacgaaccc aaaaaatggt      1380
     ggtgtaagga agctgaaaaa ctttttcgtc taagaaatgc tgctaggcag aaattctacc      1440
     gctccaaaaa gtttgaggag gcagaaaagt cgcttcaaaa ctatataagt aacaaaagaa      1500
     aatccgactt tcaatcattt gttaatgaaa tctcggaaag cccaaaatat aaacagataa      1560
     aacgaactgg caacacttgc tctgaagaag aagacgaaca gtttttacat gtaattaaaa      1620
     gtacgccatc tacaatagca gtccctccca acccaaacag gcatcagsta tttaatgtcc      1680
     gaaatccttt tgaattaggt gactttttgg aatttatagc atcaagaaag cctgactaag      1740
     caaggggact agacaagtta tcgtatcgaa tgatacaaat gctctctcct gcaaagaaat      1800
     ccgaattatt tatcttatta acaatgtatg gctgtcaggc cagataccag aaagctggag      1860
     ggagataaac gtggtaccaa ttccaaaaag aaacgcagac tcatcaatta tagataacta      1920
     taggccaatt tgcttgctaa gcgtactttt taagataaca gagggcctta ttaaactcaa      1980
     gttagatcac cacatctcac aaaataggct gcttccgaac agatctatgc atttaggaaa      2040
     cacagatcca catctatgtg cataaatgat ctaataaaca aagtgcaagc attaaaagca      2100
     gaaggacttc aggtagtggc agcatgttta gatctgcaaa aagcctttga ctgtgtcgat      2160
     ataggaatct tagagaccaa actccaaaat ctcaacttca atcaacacca cgttgcctgg      2220
     ttaactgact tccttaggaa gcgagttctt gtcaagggga aaagtcgcct tgaagttaat      2280
     agaggagtct gccaaggtag ttgccttagc cccactttgt ttaatctata cactgcaaat      2340
     cttcacagtt tgaatgacga aaactgcgaa atgtttcaat acgcagacga cttctttctg      2400
     gtttgcttcg atgctacctt ttcaggagca agggatatac ttttagaaaa aaatagcgga      2460
     gtttgaaata gagtgtagtg agctaaattt atcctttaat ccatctaagt ccagcgttat      2520
     tcactttaat ctgcgcaaac agtcgcttca agttttttat aagggaattc caattaaaga      2580
     tgtagtgcaa atcaaatatc taggacgaat agtagccgcc aataattctc catgcgcaca      2640
     cattgaacag gcaatatcat cagcaaacaa aacatgtgca tttttaaaat tgcttagtgg      2700
     atgcactttc ggggtaaatc ccaggaaagg tcttctgctt tacaaagcgt ttgccagaag      2760
     taggctagaa tatgcatgtt tttctcattt agcaaaatgt ccaaaacagc tatggataaa      2820
     ataaaagtac aaaccaattt cagtcttaga cgcgtactcg gcttaataaa gtgtacaccg      2880
     gtaccgatct tatatcacat ggcagcggag cttccgcccg agtacggaat ttgttctaaa      2940
     ctgtgatcca ttacctgtac ataatagtaa aataagggta gacctagatt tctttaaggg      3000
     aacagccaaa aacaaatgtg atatgaatac agctagtatt ttacaaatat ttaaggaaaa      3060
     aatgggatct cttaggaata gggactttga catcattttc acagacgggt cagtaacaga      3120
     taggtattca agcgcagcgt ttctagtaaa tagctcgaat tttacagcca gtttctatac      3180
     gaacaagatt ttgtcgtctc tatcggccga actgctagcg attgataagg ccctcgacca      3240
     tgtcgtttcg gtgggcataa ctcgcgtagc cttcttgacg gatagcagaa acagcgcaat      3300
     tgcaattctt aattccagtc acgacaacta caaatacaac tatacaagac aaaattaccc      3360
     aatactgaaa aaattacacg acgtttacaa tttctttaaa cacgaaccaa caaactcatg      3420
     ccaaattata atttaatatc tcgaataaat taagataagc atctgaataa ccaaccagta      3480
     accaaaccag cttagcggcc aaatactcac gggtgccgca gcaacaacaa aaaaagacat      3540
     ttggacgaaa ttggtggctt tggtgtcact gccacaacgc aaccaccctt tcttgggttc      3600
     cccaaggtta atgttggaga cacaccccat ctccggcaga ctggagtcta tttctgatgg      3660
     attatgatcg gctcatctcc ccgcccaagg caacttacac aaacatttca gaagtttgtt      3720
     taaatgaaat ttcgggcaag attaattatg aaatacat                              3758
//
ID   Outcast-1_DEu repbase;    DNA;    INV; 3244 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-3244
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 958-958 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 3 copies. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..1646,1577..2905)
FT                 /product="Outcast-1_DEu_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="TNSHKLLQSQILDDFSIIKITSLENLTNTTNNILKSN
FT                 TIKINDNNKFIPKKYWDETCEKLFRLRNASRQKYYETKLLSDAKIFFENNK
FT                 KLNNYFYKVRKENMKKLADELSNPKSVKEMWQTIKSLKSYKQIKPTSSQYN
FT                 DSDHIAFLHQISSAPDTPECIQMEFPSLDIQSLNKTYFSASDLTKFLKTRN
FT                 QNSAKGLDNISYSMLLSLPPDEIQKLVSMVNEIFNDGTIPDSWRRIKVVPV
FT                 PKKNTDSSIITNNRPICLLSVVLKCLGLITVTMEMHIDSFSLIPNRSYAFR
FT                 KNHSTAHCINDVINNIANLKAKGFHVTPAVLDISKAFDSVNIPILANILLD
FT                 RGFNSLVINFIIGFLSKRVLTIGNSEITVSKGVSQGSCLSPILFNLYTSDL
FT                 HAISDHQSTLFQYADDVFLITFDKDFTTARNVLEHKVNVFREMCNSINLTF
FT                 NPLKSSVMHFNNRRKILNIMCNNLAINDVDQVIYLGRTICTNNSSIENVKH
FT                 IIAKANKSNMFLNMLSGCRFGIHPSKALNFLRLLLGPNMNTPALLSLAFRK
FT                 RFFKAFVRPKYEYACSSFASISKTVTSNIKVHANFFLRKSLGLIKSTPVNI
FT                 IYHLAGELPPEYRLKFTTAKELAKIFAHGLPAASLLTNDFAAKNTSYIKVY
FT                 SEFKDIYDSIASLNVSSYKSRKISMDADFFKGIIPNKKLSNTSLVNSLLKE
FT                 KLDILNKKGFEILYTDGSVQENFMGCAFVHSNSNTIKSFYANTKRSSLTAE
FT                 LTALEKAIDFANSENFMKVAILTDSLGALQTLKKSCVSNCIALDILKKIEN
FT                 SQSILYLELHHIPSHLNIEGNELADSAAKNARNDGTCVSLRYTLNDVITHL
FT                 YNRIMLDWERDYNTFCIERNRGYCLLFPYVNEKPWFKDKNCYLNRLKVKQL
FT                 NRILSGHAFDKYTLHKLKVFDNSICDCNSNSIEDISHILFKCSKYGPIRRN
FT                 FPLLLKYDDIYRFFAHEPTTNYTYITQFIRSAKIDL"
XX
SQ   Sequence 3244 BP; 1134 A; 621 C; 472 G; 1017 T; 0 other;
     ctacgaatag tcataagctg ctgcagtctc aaattttgga cgatttttcc ataattaaaa        60
     ttacttcttt agaaaatctc actaatacaa caaacaacat tttaaaaagt aatacaatta       120
     aaattaatga caataacaaa tttatcccaa aaaaatactg ggatgagact tgtgagaaac       180
     tttttagatt aaggaatgcc agtagacaaa aatattatga aaccaagctt ttatcagacg       240
     ctaaaatttt ttttgaaaat aacaaaaaac taaataacta tttttacaag gtaagaaagg       300
     aaaatatgaa gaaattagca gatgagttat caaacccaaa gtcagtgaaa gaaatgtggc       360
     aaactatcaa atccttaaaa tcttataagc aaattaaacc cactagcagc caatataatg       420
     attctgatca catcgctttc ctacaccaga tctcctcagc cccagacacc ccagaatgta       480
     ttcaaatgga gtttccctct ttggacattc aatccttaaa taaaacgtac ttttcagcat       540
     ccgatctcac taaattttta aaaacacgta accaaaattc tgcaaaaggt ttagacaaca       600
     tttcttatag catgcttctc tccttacccc ctgacgaaat ccaaaaattg gtatctatgg       660
     ttaatgaaat ttttaacgat ggcactatac cggattcttg gcgtagaatt aaagttgtac       720
     cagtcccaaa aaagaacact gattcttcta taattacaaa taaccgacca atctgtcttt       780
     taagtgttgt gcttaaatgt ctaggtctta ttacagtcac catggagatg cacatagata       840
     gttttagttt aatcccaaat cggtcttacg cttttaggaa aaaccactcc acagctcact       900
     gcatcaacga tgttattaat aacattgcta atctaaaagc taaaggtttt catgtcacac       960
     cagcagtact agatataagt aaagcgtttg attcagtcaa catcccaatt ttagccaata      1020
     ttcttttaga taggggtttc aactctttag ttattaattt cataatcggc ttcctaagta      1080
     aaagagtttt aactattggt aactccgaaa ttactgttag taagggagtc agccagggta      1140
     gctgccttag tccaatactt tttaatttgt acacctctga tttgcatgcc ataagtgatc      1200
     atcaaagcac tttatttcaa tatgcggacg atgtttttct cattactttt gacaaagatt      1260
     ttacgactgc aagaaatgtt cttgaacata aagtaaatgt ttttagggaa atgtgcaatt      1320
     ctattaattt aacttttaat ccgctcaaat cgtctgtgat gcattttaat aataggagga      1380
     aaattttaaa tattatgtgc aataatttag ctattaacga tgtagatcag gttatttatt      1440
     taggtaggac catttgtaca aataattctt ctatagaaaa cgtcaaacat atcatagcga      1500
     aagctaataa atccaatatg tttttaaata tgttaagtgg atgtcgtttt ggcattcatc      1560
     ctagcaaggc ccttaatttt ttaaggcttt tgttaggccc aaatatgaat acgcctgctc      1620
     ttctttcgct agcatttcga aaacggtgac aagcaatatt aaggtccatg ctaatttctt      1680
     cctcaggaaa tcccttggac ttataaaatc gactcctgtt aacataatat accatttagc      1740
     aggtgaactt cctccggaat atagacttaa atttactacg gcgaaggaat tggccaaaat      1800
     tttcgctcat ggtttaccag cagcctctct tttgacaaat gacttcgcag caaagaacac      1860
     tagctatata aaggtttact cggaattcaa agatatttac gattcaattg ctagtctaaa      1920
     cgtttcttct tataaatctc ggaaaatctc gatggatgcg gattttttta agggaattat      1980
     cccaaacaag aaattgtcaa atacgtcgtt agtcaactcg cttttaaaag aaaagctcga      2040
     cattttaaat aaaaagggtt ttgagatttt atatactgac ggctcagttc aagaaaattt      2100
     tatgggatgc gcttttgtac actcaaattc aaatacaatt aaaagttttt acgctaatac      2160
     taaacgttcc tcgcttactg ccgagcttac agccctggag aaagccatcg actttgctaa      2220
     ttctgaaaat tttatgaaag tagccatcct gactgacagc ctgggtgcgc ttcaaacact      2280
     gaagaaaagc tgtgtttcca actgcatagc tttagacata ctcaaaaaaa tagaaaatag      2340
     tcaaagtatc ctatatctcg agttacacca catacccagc catctaaata tcgaaggaaa      2400
     cgaattggcg gattcagcag caaaaaatgc cagaaacgat ggcacatgtg tatccctgag      2460
     atacactcta aacgatgtca tcacacattt atataatcgt atcatgttgg attgggaaag      2520
     agattataac actttctgca tagaaagaaa cagaggatat tgcctgttat ttccctatgt      2580
     taatgaaaaa ccttggttca aagataaaaa ctgctattta aaccgtctta aagttaagca      2640
     actaaacaga attttaagcg gacatgcttt cgacaaatac acgttacaca aattaaaagt      2700
     ctttgacaat tctatttgcg actgcaattc caattcaatt gaagatattt ctcacatttt      2760
     atttaaatgc tcaaaatatg gacctatccg tagaaatttc ccgcttctac ttaaatatga      2820
     cgatatatat cggttctttg cgcacgaacc aacaacaaat tacacctata taactcaatt      2880
     catacgttca gccaaaatag atttataatt aaaatttcat cacactatta cacataatta      2940
     catcacactt tttcaataca tcatcacatc ataatacaca ttaatacaca ttttcacatt      3000
     ctcacatatg caaagaattt cacacttata tcgataacac tttcatcgga tttcatcgca      3060
     catcttcata aacacacaac acgacatctc acactcatat tcgttttgat caatttctaa      3120
     ccagtgtctt gaaatttcat ttcacacata ggcggtggcg tttacccgtt tcatactata      3180
     cgggacggcc aaataaatct tccccaatgt ttttggttgg ttaggaagta acttaaaaaa      3240
     aaaa                                                                   3244
//
ID   Outcast-1_DSuz repbase;    DNA;    INV; 5415 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   05-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5415
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 598-598 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. Degenerated.
XX
SQ   Sequence 5415 BP; 1890 A; 1001 C; 1028 G; 1394 T; 102 other;
     gctcgtttcg aaggaaaamc twccttttkt gagtatcaaa gtagaawact cttakaatgt        60
     twgtttcttc tttattgtaa aggaaaatta cwtccattag aagwgktgta ttttggtgag       120
     tttttggcag gctkgtaaag mcagcggcta akaaaasggt ktcgaaawgm aakctcwakc       180
     agcacccagc agccagtttt ckwaagggag gtwcttgcga aaaaatcatg scaaaaaaaa       240
     wgtgcakkgg taatcmkgag takgcaagta ttagtgcgaa tcagakggac mcaatggatg       300
     acmaaactgg cagcaatgtg aamccaaawa acatggcmgc caawtcaggc agcgaagagw       360
     gtggwaacac aaataggaaa agtgtggctg cagccgactg cagtcaaagt aacccggacg       420
     cgaccaagaa aaataccaac acwtttcaga tccwaataaa ttaacaaaca gtgaattgaa       480
     cacagcaaac gttgaggaaa agcgtctatc ttgtttatak ggagaaaawc atgttggtgt       540
     agctgctgtt ttagwttcaa ccmaggagtg tcagctgttt gaaaatgaga kaatcgagag       600
     tgstctattt ctgackawaw aatcagacat atcaaatttc acggtttcaa ggaaattatt       660
     ccacttgcag cctctctata caaaatatac tttcaaaacg ctcgagatgc caactcccta       720
     gttctaaatg cckagtaaag aagatgaasa taaacgcwtc cattccscga aamattsctg       780
     agwmtstagg wkttgttagg ggtakttsmg cgmatkwcgm tacgtcasga aaactcaaac       840
     ggatctgagk gtgttaagta cacttgatac caaccgagac cgttaaggtc agcttcgatg       900
     gagctgaktt acctgagaag wttgttctgt ttgaaactac gtaccgaaag tgcgtcagtg       960
     stttaagtgt sgtagactgg gacacmctgc ttttacgtgc aagtcatcag aacgctktwa      1020
     gaaawgcggw gacaaggaaw gtcttggwac ctgcattctg tktaatgctg aaaaccacag      1080
     tgccaaggat agacaaatct gtccaatacg ggcgaaggag caggacatca ataaaattat      1140
     gacaatcaag aagatagcta ggaaggaggt attaagtact cactcagtat ctcaaaatta      1200
     ctctkggaga attatwatgg taactttcct cccctcaaca aacgatagtc agacacagaw      1260
     caaggatctc aaggtaaatg cagtactaaa aaaacacagc tacgttagca gattggtgga      1320
     agaccggtcc cggcgcccct gaagccgtat acaaatgaca caagtgacca tgttcctttt      1380
     ttccctggtc tatccactga ggataaaatt catcatacat caagctgcta tcaattcaaa      1440
     cgaaatcata gatctgatca aagctacaaa cgataccaac aaaatagcca attaccgcaa      1500
     gagaaagaag actaaccagt tggccattga cagagattct tgcaacttca gatgagtatc      1560
     aaaattcttc agtataacat tcaatcctta aaaaacataa aaacatcttg aatatttttt      1620
     gaataatgag aactgtgaca ttgccatcct atcggaggtt ttttcacatg acttatcata      1680
     taggaatata attaatttta acctaattga aaagcacaga gggatacaaa aacagccaaa      1740
     attaaaaata gctacatatg acacaaactg tacattgtat tgcaagtgcc tctaacaaag      1800
     gaacaaatat gcttttaacc tctgtatatt ttgaccaaca tttctctcag taacttcaaa      1860
     gatgaagtaa acaatttaat aaaaaaactt gaccctttca acaaagttat tatatccggt      1920
     gatttcaatg ctagatgtag tgattttgga gacagtatac aacaggaaag gaatttttct      1980
     aaaaagggta atgtcaagtg ctggatacag acttgaaaac aacaatagtc caacctttaa      2040
     aagaaccata gactcagtgt cgggatcagt gctagatttg acattcacca aaggtattta      2100
     ctgtactgaa tggacatgta aaagtttcta cattggtggt agccatcatt ttccaattgt      2160
     ttacaaaata aatgctgatt taagcttacc tagacaagtt cttagcaaaa aacagattat      2220
     tcaacgaatt aggaaaaata gagtcatgtg gtagtatatc aaacctcact aaaagtatga      2280
     cgagtgaaat caaggcagcc acatattgtt ttggagctaa caaaactcca aaggcatggt      2340
     ggaatgatga attaaagcaa cttttcaagg aattttccga tagtcaaagt aaagcatgtc      2400
     gtgatccgcc atatgaaaat tatgtgaatg cagttaatct caaaatcaaa tggaaaaaat      2460
     cagtcgcaat tgccgaaaaa aactcgtttt tttaaaaaga caactaaatt aaacggacca      2520
     aacacgaaaa ctgcgtggag gtctgtaaaa aatctgaaaa actgtcagga cgaaaagtta      2580
     gataggttcg atctgataaa tcaagttcct ttctggaatt tttaaatgag caaatacctc      2640
     ttgtaaacag actgtcagat gaaagcctat attccagaaa gaacaatgaa aatccgggtt      2700
     ttgttctgga ggatctccaa gaagttcttg atcaagacaa aaaaactgca ggaggagctt      2760
     attcaataac ttacaaaatg attgagcctc tcagcacagc agccaaggtc gattggtagc      2820
     cttgtacaac aataaggtta tgaactgtga taccggatgg agaattatca ggatcctccg      2880
     attcccaaaa gaaacaaaga tttatccgat gttaaaagct ttaggctatg tcccttatat      2940
     cctgtcttgc caaaacagta aattgtatga ttaaaaagag attagaacta tttatagatg      3000
     aaaacaagtt actgccatat aggtcctatg cataccagaa aggaaaatca gcggcgatgt      3060
     gcataaatga tgtgattaat gtcatagctt caaggaaaaa gaataggcta aatgttgtwc      3120
     tagcagttgt tgacctgtcc aatgcgtata actgtgtaaa tctgaatttc ctaaaattga      3180
     ttatggaaaa tgacaggttt ccaaaagtct ttacagactg gwttcttagt tttctatcaa      3240
     atcgtgtgtt gaaactggga actgcaatac aggtkacaaa agatggggtt cctcaaggat      3300
     cctgcttatc cccaatcttg tttaacatat acacagaaag attgcatcaa atcaatgawg      3360
     aaaacactca gattatgcag tttgctgacg atttcatgat watttcgtca ggaagagcat      3420
     tcaatagtac ggttgacaaw ttgcaaaaca aactgacaga cttcaatcta ctatgcaaag      3480
     accttggttt ttctttcaac ccaagtaaat mggttgtaat waatgtcggt aggggatgta      3540
     aaaaggtagc gaatgtagcc gtagagaatg tggctgtacc tgatcaaaaa agtcttactt      3600
     ttctaggtag gatcaatctg ccaacatgtc acataaagag catgtcaaaa agataaaagc      3660
     tatatgmtac tacgatcaag tctgggttga aacccaaaca aaccttttta gatcgtttgt      3720
     aagaagcaag caggaatatg ctataactag tattgcggac atgggckgtg gagtgaacca      3780
     aaccttagag atcgctcagg ctggagcctt gagaagatgt gtaggtgtgc ctcctggtac      3840
     aagcaagcat gaaatttttg ttcttgccgg tgtgatgcca ccgatattca gagccaaact      3900
     tctcaccgcc aaagaatcgt tcaagctgaa agcacaaaac cccctgctct tcgaggtcac      3960
     caggtcatct cckgctgaaa caagctacac caacacgata aaggacaata cttagctacg      4020
     cgacctgttt tacgtctcca acaagatatg tgtaaatgaa aaagtcctag gcaaaagcaa      4080
     aaatgaatac tcatttgagg aactccgtgc cttttatggg gaaatctttg agaaatatat      4140
     tggaaatgga tggaatataa tttccacaga tgcgtcaata gggcctgtct caagtggcat      4200
     tgggatacag aaatgcccag cgggattttt cacaagttta agttcggtgc taccactctc      4260
     tctttctcaa aggtccaagt acaaaaacgt tgcgataacc tgtgattgcc ttggggctat      4320
     cagtttaatt aataataaaa attcagaagc gtacatggat tcaagagata cataacacaa      4380
     ttgagaattc agatgttgaa aagctagaac tagtttgggt acctggccac aagggcatta      4440
     acattaaaga aaagactgac ctcattgcca aatcagctgt aaacgaagga gaatcgatag      4500
     acattgggct taackttaaa katgccataa gggaaatcaa aaaactttta gaatccaact      4560
     ggaatgagga ttacaagaat aagtgtacaa tcaagggatc aaacctcata aaggtcttcc      4620
     caaatatacc aaaaaaacca tggcaccatg atctaaaatg gaacgcmaaa agtataaaag      4680
     ttttaaaata gacttatggt tgactcgaca tatgataagg tttttcttac aaaataaaag      4740
     ctgtaagtac aaatttatkt gatmtatgca atgtacctga atatgccaag catatgatct      4800
     tcgaatgcca aaaacttaac aacatacgat ccaaattcaa aatatttaag tactataaag      4860
     atttgaatgm attacttatt aaaaaagaac cactccattt taagagagct ggcaaaattc      4920
     attagtacag ccaatctaaa cttttaatct acctcttttt tcaccatcta taacaagtaa      4980
     aattctgtgg mgtttggcca aacaaccgcc tgtcaagctc actgccagga agtccttgta      5040
     ggaccacctt ctgtggttcc aagtctgaga cattcagagt gaagtacgag tctatgtact      5100
     atcacatcct gaagctcctt gcaaaacgca acctgtggtc ctgtaccaac aacgccatat      5160
     caaaacctct cggataacct acccggagga taaataccca cattttttga catcactacc      5220
     ttaagaagaa cattcgggag gaataacctc aatcatcacg acattgagaa tatccacgat      5280
     taatatcgat agcagctgag tctacgtggg tgtatcgcgc atgcaccttc aaaccactag      5340
     tacctggtct atgcggcagt gttgttgcga ccaacagccc tatcatccat gagatgattt      5400
     aaaacccaaa aaaaa                                                       5415
//
ID   Outcast-1_DT repbase;    DNA;    INV; 5498 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5498
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1716-1716 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           237..1775
FT                 /product="Outcast-1_DT_1p"
FT                 /translation="MADAENSAAGHLNISSASKNISRSDDSKKRKLVLNNL
FT                 DDQHVLKLANLSSNKESTSSMDSENSFFDVMDEGAKGVSFPANEPVNLKSQ
FT                 ATSSNNNAVSNNGSSDRTENLYDVLHVGVASVLLDTKECKSTENIIAKNGL
FT                 YLFGKIKDVGLKNICNIVVLGAKLYKVVFKEWRDANACVLNKKLADMKISA
FT                 FIPKNFTETSGVIRNVPVDLSDKELEANIDSLIEVKSVERICRKVKSTNTD
FT                 GENTFKLEPTESVKINFLGTEIPESISVFGVINLKVTHFIPNVRQCFKCGR
FT                 LNHTTSRCKAKDRCRSCGAQDCKNTCKVKKCILCNSPDHHSWSRYECPVWA
FT                 KEMHLMKLMTIRKLSRKEVLEKYSLPSEFQVFNKYDQDFPSLTQTSIPVTV
FT                 NRDEVVNKSLKKHSYVTRLVQRPTAPIMKPNFPPLESYEHVKSDWKFKYPD
FT                 REEISEKDSTFLLIKDLIQLILPLAEGKSEILESVMKIQNKIEFLKQDKRK
FT                 LTRNKSDMTTVNHLNAY"
FT   CDS           1768..5307
FT                 /product="Outcast-1_DT_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MPIKIYQHNVQSLSYNKNDIEFVLNNNNYDIAVLSEV
FT                 FSHNVLNNRRKIALFNIIEKHRDDNYGGVAIAFRKCIKFKSITYRTDNDVI
FT                 VATTLNLNPNITIISVYFEPSLSMDDFKCEILNILDFSDNLNNVFIIGDFN
FT                 ARNTVLGDYTNNARGKFLIESMNNAGFVCLNSGSPTYRRHIDSAQGSVLDL
FT                 AFTNAGLSTSWECKPLFVGGSHHHPVNIEVLDTAMKSSTFIAKNRLLNSLG
FT                 KTVLNGDITNIASTIKGKIKKSTYIIKKNRIPKLWWNNDLKILFERYKATQ
FT                 TLANRHPSMDNYILAVNVKAVWKKAVKAAKSLSYMEKLEEINEQPSNQSAW
FT                 NFLKALKNLDSGNYCKLNMSDQENYLQYLEQQIPTDVSNSMFHDQIVDAEL
FT                 FQEFNLVDLNLVLSKKKKSAGGHDGVTFEMLNNLDSNCKSHMLKLFNQLIR
FT                 DNRIPEEWRIIKIIPIPKKDKDLTDYKNFRPISLISVFAKTINKMIKERLC
FT                 EFIESEYILPARCFSYRKNRSAAMCLNDILNSCELYKSRKKSVAMVILDLE
FT                 NAYNCVNLNFLKRIMVSENIPPIFINWIHNFFKIRILTLGKYTKTVTGGIP
FT                 QGSCLSPVLFNLYTKRLHQIQDRNTEVFQFADDFIILSSKRFFQDMEDNLQ
FT                 SKINDFELLCSDINMSFNSGKTVSLVMCNGNSRTLNIQATSGVIRQVRNTK
FT                 LLGRIISSNGSQIEQVKKIKGDNNNAMQILNLATTIKSGLRPKVATNIFKT
FT                 FIRSKNEYALTSYGNLTKSSSKQLFITQAKSLRRCVGVNPFTPKFMVFALA
FT                 GVIPPCYRAKILTAKELIKLKTIDVNRFNTIINSNIKTSYKVVYDSLKLII
FT                 DRIQIADHYTYFKNIVIQLNFSSNNKKDIAKEEAKGRYSELISYFRQNDYN
FT                 IISTDASVTSSCTGLGIAAICDRSNEMYKIENRMSSVQAELLAIKQGCILA
FT                 IKSNWRKVAILTDSKGALMVLRNKNCDNNTVSDIHNLLSISCISSCYLQWI
FT                 PGHMSLDLNEKADFLAKQAVYDGTDIDYKLSIGEAKRLLNQEIWKEWGSEY
FT                 ERLAREDGGIFAKTYPTLSIIPWHIRLKWNAKDIKLINRLMTESTYDNCFL
FT                 FRIKAIDSNLCTLCNLIDDANHQIFNCQRHILIRRKYKIFNRFFNISDLIL
FT                 SKEQLFYREVAKFINEAQINL"
XX
SQ   Sequence 5498 BP; 1901 A; 903 C; 1033 G; 1661 T; 0 other;
     accttctctt tttggcagcg ggcgcggacg gacgtgcctt ggatagtgct ctaattaagt        60
     gaagatttaa atcagtgtgg ttagaaagaa tactaccatt gagtagataa agtcttgttt       120
     atttgtgatt tattcttttt aaatcccgat tactcttttt agaggagatt tttaaagatt       180
     tttttctgaa taaggtgagt ctttggcaaa aaaaggtggt caagccggcg aaaaacatgg       240
     cggacgccga aaattcggcg gccggccatt taaacatcag cagtgctagc aaaaatataa       300
     gtcgaagtga tgattctaag aaaagaaaac ttgtactgaa taatcttgat gatcagcatg       360
     ttttaaagct cgcgaattta agttctaata aagagtccac aagctctatg gattctgaga       420
     attcattttt tgatgtaatg gacgagggcg ctaaaggtgt ctcatttcca gctaacgagc       480
     cggttaacct caaatctcaa gctaccagta gcaacaacaa cgcagttagc aacaatggtt       540
     cttctgacag gactgaaaat ctttacgatg tgctccacgt tggagtagca agtgttctgc       600
     tggacaccaa ggagtgtaag agtacggaaa acatcattgc taaaaatggt ctttatcttt       660
     ttggtaaaat aaaagacgta ggtttgaaaa atatctgtaa catagttgta ttaggtgcga       720
     agctttataa agttgtcttt aaggagtgga gagatgccaa tgcgtgtgtt ttaaacaaaa       780
     agctagctga tatgaaaata agtgcgttta taccgaaaaa ttttactgaa accagtggtg       840
     ttatcaggaa cgttcctgtt gacttgagtg acaaagaact tgaggcgaac attgattcgt       900
     tgattgaggt caagagtgtg gaaaggattt gtagaaaggt gaaaagtact aatactgatg       960
     gagaaaacac gtttaaattg gagcctacag aatcagttaa aattaatttc ttaggtaccg      1020
     aaattccgga gtcgatttct gtgtttggag ttattaacct aaaagttact cactttattc      1080
     ccaatgttag acagtgtttt aaatgtggac gactaaatca caccacaagt cgctgcaagg      1140
     ctaaggatag gtgcaggagc tgtggtgccc aggactgtaa aaatacctgt aaagttaaaa      1200
     agtgtatttt gtgtaatagc ccagatcatc attcctggag taggtatgaa tgccctgtat      1260
     gggcaaaaga gatgcactta atgaaactaa tgacgattcg aaaattgtcc aggaaggaag      1320
     tcctggagaa atattctttg cccagtgaat ttcaggtttt taataagtat gatcaagatt      1380
     ttccttcatt aactcagaca agcattccgg tgacagtcaa cagagatgag gtagtgaaca      1440
     aatcattaaa aaaacattcc tatgtgacca gattagtgca gagaccgact gcacctatta      1500
     tgaaacccaa tttccctcct ttggagtcct atgaacatgt gaaatctgac tggaaattta      1560
     aatatccaga cagagaggaa atttcagaaa aagacagtac atttttactc attaaggact      1620
     taattcaact tattttacct cttgctgagg gtaagagtga aattctggaa agtgtcatga      1680
     aaatacaaaa taaaatagaa tttttaaagc aagacaaaag aaaactaaca cgtaataaat      1740
     ctgatatgac gaccgttaat catttaaatg cctattaaaa tttatcaaca taatgtccaa      1800
     tctttatctt ataataaaaa cgatattgag tttgtcttaa ataacaataa ctatgacatt      1860
     gcagttcttt ctgaagtttt ttctcacaat gtgttaaaca atcgaagaaa gattgcgctt      1920
     ttcaatataa ttgagaaaca tagagacgac aattatggag gtgtggccat tgcgtttaga      1980
     aaatgtatta aattcaaaag cattacttac aggactgata acgacgttat tgttgcaaca      2040
     acattaaacc taaaccccaa tataactatc atttctgtgt attttgaacc ttcattatcc      2100
     atggatgatt tcaagtgtga aattctaaat attcttgact tttctgataa tttaaacaat      2160
     gtctttatta ttggtgattt caatgccagg aatacagtcc taggtgatta tactaacaat      2220
     gctcgaggta aatttcttat tgaatcaatg aacaatgctg gttttgtttg cctgaactct      2280
     ggtagtccta cgtacagaag acatattgat agtgcgcaag gttctgtgct ggatctagct      2340
     ttcacaaatg ctgggctcag tacatcctgg gagtgcaaac ctttatttgt tggtggtagt      2400
     catcaccacc ctgtaaatat agaagttctt gatacagcaa tgaaaagcag taccttcata      2460
     gcaaaaaaca gattattgaa cagtttagga aaaacggttt taaacggtga cattactaac      2520
     atagctagta ccattaaagg aaaaattaaa aaatctactt acattatcaa aaagaatagg      2580
     attcctaaac tgtggtggaa taatgacctc aaaattcttt tcgagagata caaggctact      2640
     cagaccttag ctaacagaca cccttcaatg gataactata ttttagctgt caatgtaaag      2700
     gcagtatgga aaaaggctgt gaaagctgca aagagtctct cttatatgga gaaattagaa      2760
     gaaataaatg aacaaccttc taatcagtct gcttggaact tcctaaaagc tcttaaaaat      2820
     ttagattctg gtaactattg taaattaaat atgtctgatc aagaaaacta tctgcagtat      2880
     ctggaacaac aaataccaac ggatgtttcg aactcaatgt ttcatgatca aatagtggat      2940
     gctgaactct ttcaagaatt taacttagtt gatcttaacc tggttttaag caaaaaaaag      3000
     aaaagtgctg gaggtcatga cggtgtaact tttgagatgt taaacaacct tgactctaat      3060
     tgtaaatcac acatgctgaa gctttttaat caattaatca gagacaatag gattcccgag      3120
     gaatggagaa taattaaaat tattcctatt cccaaaaaag ataaggacct tacggattac      3180
     aagaacttca gacccatttc ccttatatct gtttttgcca aaacgataaa taaaatgatt      3240
     aaggaaaggt tgtgtgaatt tattgaaagt gagtacattt tgcctgctag gtgtttctct      3300
     tataggaaaa acagatcagc tgctatgtgt ctgaacgata ttttaaactc gtgtgagcta      3360
     tacaaatcac gtaaaaagtc cgtggcaatg gtaattcttg accttgagaa tgcatacaat      3420
     tgcgtcaatt tgaatttcct caaaagaatt atggtttcgg aaaacattcc tccaattttt      3480
     atcaattgga tacataactt ttttaaaatc agaatactaa ctctaggtaa atacactaaa      3540
     acagtaacag gaggtattcc gcagggcagt tgtttgtcgc ctgttctctt taatttgtac      3600
     acgaaacgct tacatcaaat acaagacagg aatactgagg tttttcaatt cgcagacgat      3660
     tttatcatct tatccagtaa gagatttttt caagatatgg aggataactt acagtctaaa      3720
     atcaatgact tcgaactgct atgcagtgat atcaatatgt ccttcaactc aggtaaaacc      3780
     gtttcactag ttatgtgcaa cggaaatagt agaactctta acattcaagc aactagtgga      3840
     gttattaggc aagtgaggaa tacaaagtta ctcggtagga taatctcgtc caacggttcc      3900
     cagattgaac aagttaaaaa aatcaaaggt gataataata atgcgatgca aattttaaac      3960
     ttagcaacca caattaagtc aggtttaaga ccaaaagttg cgactaacat ttttaagacc      4020
     tttattaggt caaagaatga gtacgcactc acctcatatg gtaatcttac aaagtcttcc      4080
     agtaaacagt tgttcattac acaggcaaaa tctctcagaa gatgtgttgg agtaaatcct      4140
     tttaccccaa aatttatggt ttttgcttta gctggtgtta tcccgccttg ttatagagct      4200
     aaaatcttga ctgctaagga actcattaag cttaaaacaa tcgatgttaa cagatttaat      4260
     acaattatta attctaatat taaaaccagc tataaggtag tctatgattc actcaaactt      4320
     atcattgaca gaatacaaat tgcagatcat tatacgtatt ttaagaatat tgttatccaa      4380
     ctaaattttt cgtctaacaa caaaaaggat attgcaaaag aggaggccaa aggtagatac      4440
     agtgaattga tcagttattt caggcagaat gattacaata tcatatccac ggatgcctct      4500
     gtcacaagct cgtgcacagg actcggcata gccgctatct gtgataggag taatgaaatg      4560
     tacaaaatag agaatagaat gagctcggtt caggctgaac tcttagcaat taaacaaggt      4620
     tgtatcttag ctattaaatc taactggagg aaggtggcca tacttacaga tagtaagggc      4680
     gcgcttatgg tactacgtaa caaaaactgt gataataaca cagtatctga tattcataat      4740
     cttcttagta tttcgtgtat atcctcatgc tacctgcagt ggatacctgg tcatatgtct      4800
     ctagacttaa acgaaaaggc tgatttttta gctaaacagg ccgtttatga tggcactgat      4860
     attgattaca aacttagtat aggtgaagct aaaagattgc taaatcaaga gatttggaaa      4920
     gaatggggat ctgagtacga aagattagca agggaggatg gaggcatctt tgcgaagact      4980
     tatcctacat tatcaattat tccgtggcac ataagactta aatggaatgc aaaagacatt      5040
     aaattgatta atagattaat gactgagtct acatatgaca attgttttct gtttcgtatt      5100
     aaggcaattg acagcaatct ttgtacctta tgtaatctga tcgacgatgc taatcaccaa      5160
     atttttaact gccaaagaca tatcttgatc agaagaaaat ataaaatctt taatcgtttc      5220
     tttaatattt cagatctcat tttatcaaaa gagcagcttt tttatagaga agttgcaaaa      5280
     tttattaatg aagcacaaat caacttgtag gtaattttta tttaacgtta attatatcca      5340
     tgtagaaagg taattcgtgg atttgccacc ggccaacccc gctgttcggg aagcatccat      5400
     gcgatactat cccgatatat cgtatctggt catatgcaca cgtcgtgcga ccatcactat      5460
     cagcaagcat tgctgaaaac aaagccaaaa aaaaaaaa                              5498
//
ID   Outcast-1_DWi repbase;    DNA;    INV; 5436 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5436
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1962-1962 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
CC   It is similar to Drosophila milanda non-LTR retrotransposon
CC   spock.
XX
FH   Key           Location/Qualifiers
FT   CDS           92..1615
FT                 /product="Outcast-1_DWi_1p"
FT                 /translation="MGKITRKITGSKARGGSPFSELNGSKKPRISRTSKER
FT                 KITTNESQSESEYNEVEMTEMPKSNDSAPKENKDPTEMSNGKSQNNVLYYN
FT                 NTHKGPFVVYVDRVDGNNKESNKSRLPINPLELNAVLFKLKVKDIITVNKI
FT                 GYGRCKVEFKSAAAANIFIASDLKKYDYEPKLLKHFLYKTGIIFQIPTRFS
FT                 DEELKEYISTPMDIHEIIRVRRKEKDNLIATSRVKIVFKGSQIPTEITFLY
FT                 SKVPVSPFVPFNQCYRCFRFNHFAQHCKQLDQKCNKCSLSHDKEKTCTQTI
FT                 CINCKENHPATSIDCPARKRAFAIQKCMTMENLSRNEVKIRYPALFQRQNT
FT                 IDTNDTTQFPIPTWQKTSTTPTLQNNTKLSTEQLHAHIPYNKTLRNMQNRR
FT                 NEERNSSETMSTWKATLNEHKITLNEKYVNTHTNNTFKPTPPTITSQSNQS
FT                 TDSPSALEMAKEGLSQLAIDISSFITNPNIQLNSVHYKFLETLRDRIAQTN
FT                 TKIDIIKINQLN"
FT   CDS           1677..5252
FT                 /product="Outcast-1_DWi_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MKILQYNIQSLTHNNNKHLLEIFLINNDIDIAIISEI
FT                 WVTNNANCSLANYNFICNPRADGYGGVGIYLKKYIKFTQLNCISEVEVISV
FT                 STMNLKHNINLFSVYAAQSLSDDLFEKGCKEILTRANQTNGLTIIGGDLNA
FT                 KSQIWGNTIQNNRGNILEQLLINNNFYCLNNGSPTYSHNASYFSTLDITLI
FT                 NNYNLNPKWTVTNAKISNSNHLPVILELDETYEVQNQKRINHKKILQAFSK
FT                 IHISSLDNLTSTSQNITRQNTISIDPKNRYKPKKYWDEHCDRLFRLRNACR
FT                 QKYYKTKLHTDALIYLKSNRTLNNYLHKVRKNNIDKLMDEISKTNSAKEMW
FT                 QKITALKQYKKLKPTKNEKTDEDHEKFLKQMATVPDTSDCIRMKPPNTWLL
FT                 PASNSNFTDNDLLDFLNSRNPDSAKGPDNISYRMLLALPPSEIQILVSLLN
FT                 ETLDNGDIPASWRKIKVVPVPKKNLDSAIITNNRPICLLSVVFKCLEGLVK
FT                 TRMENHINNNNILPPRSYGFRKHHSTSNCINDVLNNIANLKARGMHVCASV
FT                 LDLSKAFDSVNIPILGNKLIDLGFDHRHIQFIYNYLKERVLTMGRTEIKIR
FT                 KGVSQGSCLSPILFNLYTAELHKISNQINSILFQYADDFFLVCYHKNFSDA
FT                 KNILERQVTEFSKMCNKINLSFNPNKSAALHFNLRRKPLQIICNNVAIRDV
FT                 DKINYLGRLISTNNSMTQHIKETIAKSNKTNMFLHMINGCRFGTHPKNAIL
FT                 FYKAFTRNRYEYASSSFANTTKTVMGIINTHANLHLRKALGLIRSTPTYII
FT                 YHLAAELPPEYRIKFTTAKELIRVFAYGLPAASLLSSVFHANKTSYAKVYA
FT                 EFKDVLDNITPIEPTPIRTRKIFIDANFSKGAFKNIRXANETMILSLYKEK
FT                 IKNLNSKNFDLIYTDGSVSEDFTGSAFFHLGSNITKSYYSNKKLSSLTAEL
FT                 TALEKAVEFADSNHLFKVAFLTDSLGAIQTIRNPKNNNCIAQRILKNIENS
FT                 YNIISVEIHHIPSHSNIKENDLADTAAKNARHDGVFTHISWTINDAIIHIY
FT                 NKIKLEWERAYNEFCIDRNKGYCLLYPYVSSQPWFQGKNQFHRLEIKQLNR
FT                 ILSGHAFDKNTLFKMKVVDNNLCDTCNITEDISHIILNCSKYTNTRMNFPT
FT                 LTKYNDIYQLLAQEPIANYKSITQFTKAANIEL"
XX
SQ   Sequence 5436 BP; 2229 A; 1096 C; 780 G; 1330 T; 1 other;
     aaaaacaagt caaatcagtg aaataagtca attaaaaaca aaaaaaaaaa aaaaaataaa        60
     atttaatttt gtggaaagtt aaaaaaaaaa aatgggtaaa attacccgta aaatcacggg       120
     ctctaaggcc aggggtggta gccccttctc agagctaaac ggatccaaaa agccaagaat       180
     atcgcggaca tcaaaggaaa gaaaaattac cactaatgaa agccaatcag aatctgaata       240
     taacgaagta gaaatgacag aaatgccaaa atccaatgac tcggcaccaa aggagaataa       300
     agatccaaca gaaatgtcaa atggcaaatc gcaaaataac gttctatatt ataacaatac       360
     acacaaggga ccatttgtgg tgtatgtaga cagagtagat ggaaataaca aagagagcaa       420
     taaaagcaga ttaccaatta atccattaga gctaaatgca gttttgttta aactaaaagt       480
     caaagacata ataactgtca ataaaatagg atatggacgt tgcaaggtag aatttaaatc       540
     ggcagctgca gccaacatat ttatcgcatc ggaccttaaa aaatatgact atgaacccaa       600
     gttactaaag catttcctat acaaaactgg aatcatattc cagatcccca caagattctc       660
     agacgaagaa cttaaggagt atatctcaac accaatggac atacacgaga ttattcgtgt       720
     gcgtagaaag gagaaggaca atctaattgc aacatctaga gttaaaatag ttttcaaagg       780
     atctcaaata ccaacagaaa taactttcct atactcaaaa gttccagtaa gtccttttgt       840
     accttttaat caatgctaca gatgcttcag atttaatcac tttgcgcaac actgcaaaca       900
     gttagaccaa aagtgcaaca aatgctccct gtcacatgat aaagaaaaaa cctgcacaca       960
     aactatttgt atcaattgca aagaaaatca cccagctacc tcaatcgact gccccgctcg      1020
     caagagagcc tttgccatac agaaatgtat gacaatggag aatctatcca gaaatgaggt      1080
     aaaaattaga tatccagctc ttttccaaag acaaaatacg atagacacta atgatacaac      1140
     acaatttccc attccaacat ggcaaaagac atctacaacc ccaactctgc agaacaacac      1200
     aaaattatca acagaacaac tacacgctca catcccatat aataaaacat taagaaacat      1260
     gcaaaacaga cgaaatgaag agagaaactc ttctgaaaca atgagtacct ggaaagcgac      1320
     tctaaatgaa cacaaaatta ctttaaatga gaaatacgtt aacacacata caaacaacac      1380
     atttaaacca acacccccaa ccattacatc ccaatctaat cagtctactg acagcccctc      1440
     tgctcttgaa atggcaaaag aaggcttatc acagctggct atagacatat cctcatttat      1500
     aactaatcca aacattcaac taaattcagt ccactataaa tttttagaga cactaagaga      1560
     tagaatcgca caaactaaca caaaaataga tattataaaa ataaaccaac ttaattaaat      1620
     tcaaatctta atccttactt agtaccttac actcaacatc ttattataat agacatatga      1680
     agattctaca gtacaatata cagagcctaa cgcataacaa taataaacat ctactagaaa      1740
     tatttttaat aaacaacgac attgatatag caattatatc tgaaatctgg gtcacaaata      1800
     atgctaattg tagtttagcg aattacaact ttatttgcaa ccccagagca gatggatatg      1860
     gcggagtagg catataccta aaaaaatata taaaattcac acaattaaat tgcattagtg      1920
     aagtagaagt gatttcagtg tccactatga acctgaaaca taacatcaat ttatttagcg      1980
     tctatgcagc gcaaagttta agtgatgatc tttttgagaa aggatgcaaa gaaattctaa      2040
     cgagggcaaa ccagactaat ggtttaacaa tcataggagg agatcttaac gccaaatcac      2100
     aaatatgggg aaacacgatt caaaacaaca gaggaaacat cctagaacaa ttactaataa      2160
     acaacaactt ttattgtctt aacaatggca gccccacata ttcacacaac gcatcgtact      2220
     tttctacctt agacatcaca ttaattaaca actacaacct caacccaaag tggacagtga      2280
     caaacgcaaa aatatcaaac agcaaccatt taccagttat actagaacta gacgaaacat      2340
     acgaagtaca gaatcaaaaa aggataaatc acaagaaaat acttcaagcc ttctcaaaaa      2400
     ttcacatttc ttcactggac aacctgacat caacttcaca aaatataact agacagaata      2460
     caatttcaat agacccaaaa aatagataca aaccaaaaaa atattgggat gaacattgtg      2520
     acagactttt tagacttaga aacgcgtgca gacagaaata ttataaaaca aaacttcaca      2580
     cggacgcttt aatttattta aaaagcaata gaacattgaa caactactta cataaagtta      2640
     gaaaaaacaa tatagacaag ctaatggacg aaatttcaaa aactaattca gcaaaagaaa      2700
     tgtggcaaaa aattacagcc cttaaacaat ataaaaaact taaaccgaca aaaaacgaaa      2760
     aaactgatga ggatcatgaa aaatttctta aacaaatggc gacggtacct gacacttcag      2820
     actgcattag aatgaaacca cctaacacct ggctactacc cgctagcaac tcaaacttta      2880
     ctgacaacga tttacttgac tttttaaatt cccgcaaccc ggactcagca aaaggtccag      2940
     acaatatctc atatagaatg cttctagcct taccaccctc agaaattcaa attttggtat      3000
     ccctgctaaa tgagactcta gacaacggtg acataccagc tagttggaga aaaataaaag      3060
     tagtacctgt ccctaaaaag aatctagact cagctataat aacaaacaat agacctattt      3120
     gcctactaag cgtagttttc aaatgcttag aaggtttggt aaaaacaagg atggaaaacc      3180
     atataaacaa caacaatata ttgcccccga gatcttacgg cttccgtaaa caccactcca      3240
     catcgaactg catcaatgac gttttaaaca atatagcaaa tctgaaagct aggggcatgc      3300
     acgtttgtgc atctgtatta gatctaagca aagccttcga ctctgttaat attcccattc      3360
     taggcaacaa gctaatagat ttaggtttcg atcacagaca catacaattc atttacaact      3420
     accttaaaga aagagttttg actatgggaa gaacagaaat aaaaataaga aaaggagtaa      3480
     gtcagggtag ctgccttagt ccaatacttt tcaatttata cacagctgag ctgcacaaga      3540
     taagcaacca aattaacagc atactatttc aatatgctga tgactttttc ctggtatgtt      3600
     accataaaaa cttttcagac gctaaaaaca tattagaaag acaagttaca gaatttagta      3660
     aaatgtgtaa taaaatcaac ctgtcattca acccgaacaa atctgctgct ttacatttta      3720
     atttaagacg taaaccccta caaataatat gcaataacgt agctataagg gacgtagata      3780
     aaattaacta cttaggaaga ctgattagca ccaataattc catgacccaa cacataaagg      3840
     aaacaattgc taagtcaaac aaaacaaata tgtttcttca tatgattaat ggctgtcgtt      3900
     ttggcaccca tcccaaaaat gcaattcttt tctataaggc ctttacaagg aacaggtatg      3960
     aatatgcaag ctcttcattt gcaaatacaa ctaagacagt aatgggcatc ataaatactc      4020
     atgctaactt acatttaagg aaggcattgg ggcttattag atcaactcca acttatataa      4080
     tataccacct agcggccgaa cttccaccag agtatagaat taaatttacc acagcaaaag      4140
     aactgatcag ggtcttcgct tatggcctgc cagcagcgtc gcttctgtcc agtgtctttc      4200
     atgctaataa aacaagttat gccaaagtgt atgctgaatt taaagatgtc ctggacaaca      4260
     ttacacccat agagccaact cctatacgca cacgaaaaat cttcatagat gccaattttt      4320
     ccaaaggtgc ctttaaaaac ataagasatg caaatgaaac aatgatactc tccctgtata      4380
     aagaaaaaat taagaactta aattcaaaaa attttgacct gatttacaca gatggttcag      4440
     tttctgaaga ttttactgga agtgcttttt ttcacttggg ctccaacatc acaaaaagct      4500
     attacagcaa taaaaaactg tcatcattga ctgcggaact cacagctttg gaaaaagcag      4560
     tggagtttgc tgattcgaat cacctcttca aagtagcgtt cctaacagac agtcttggag      4620
     caatccaaac aattagaaac ccaaagaaca ataattgcat tgctcaaaga atccttaaaa      4680
     atatagaaaa tagttataat atcatctcag tcgaaataca ccacatacct agtcactcaa      4740
     acataaaaga aaacgattta gctgataccg cagccaaaaa tgccagacac gatggagtgt      4800
     tcacgcacat aagctggaca atcaacgatg ctatcattca tatatacaac aaaataaaac      4860
     tagaatggga aagagcgtac aatgaatttt gtatagatcg aaacaaagga tactgccttc      4920
     tatatcctta tgtgtcatca caaccatggt tccagggaaa aaaccaattc catagactgg      4980
     agataaaaca actaaacaga atactaagcg gtcacgcatt tgacaaaaac actctattta      5040
     aaatgaaagt cgttgacaac aacttatgcg acacctgtaa cattacagaa gatatctcac      5100
     atattatttt aaattgttca aaatacacaa acacccgaat gaacttccca acactaacaa      5160
     agtataacga tatatatcaa ttactcgcgc aagagcctat cgccaactac aaatcgataa      5220
     cacaatttac taaggctgcc aacatagaac tctaacaatc taatccacac ataaataaat      5280
     taaattaaat agctaattta tttataacaa aaaccaaaat acgaaactca tcatcacgaa      5340
     tacgctgtgg cgttaacctg ttatacacag ggaggccaaa gaaatcttct gttcagaagt      5400
     aacttaatat caaaaaaaaa aaaaaaaaaa aaaaaa                                5436
//
ID   Outcast-20_AAe repbase;    DNA;    INV; 5659 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-20_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5659
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1434-1434 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 12 sequences with >95%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           267..1823
FT                 /product="Outcast-20_AAe_1p"
FT                 /translation="MMAEGISDKMEDNDWTHVLARKSKARHKDRDDENDSD
FT                 YDRKTKRNKHNETKPKKDKYHATRVLTDDDDDNLNDENRIQNGDSNTNNEN
FT                 QDNNAHKSQSNTGTKRKTDQFTTKRQNKDNTDGXYNDGWIKNQNYKTFIIH
FT                 KEIKDKEQNNNVKYPHPMEVAKMLKNIGVTKYNTMKSVGRGKFQISFEKPR
FT                 DAEQLLNSKLLTDSFGFSIFVPTRFKESIGVVGDVPPSITDDEIIENSSCE
FT                 NNLKIYKVERIKKRVGENKFQPTYSIKIFFKGETLPKSIEIYGTHRFVEPY
FT                 VFPLKICFKCWRFGHREKFCKSKETRCCNCGQFHNEQNCDTPEPKCVNCSG
FT                 NHKASNKECPERLRQDLIRQDMAVNKSSYFEASDKYPKQTKSNLQTRLDSL
FT                 RDFPRLEDNSQNSTTNVRQKTKRPINQTPYFTTPQNEFNRQDTKHEFLTNP
FT                 YKTSEIEKITQMIKEDLIRQFNLNNMFEKIKAIQKTIIQSTNKTDTIEQDL
FT                 LLINISEELNKIVNPEVTTTELK"
FT   CDS           1845..5480
FT                 /product="Outcast-20_AAe_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MQDNFRKLTIVQNNVTSLRPIDTRESIQNFLLRHNTD
FT                 IVMLSEIWLKPEETYNFTGYKLLTETRSAGYGGVGFLVKNEIEFKHFKLPN
FT                 LQPIESIAIVTQNTLPKILFISIYIPPLPVNNNDIREPLKKLFETIDTFHG
FT                 SVILAGDFNAHNRLWNPFHENCSRGELIEHLLDNQELVLLNDGTSTLIKSP
FT                 NTTPSAIDLTFASPEIACKINWKVLDEDFFSNHRVIEFDIDNTARKYDYNK
FT                 VYFNKKQAINKLNMLQPHAFHTTDDITEIIKEKFNECTYTINNNKNRSPKK
FT                 WWTEKIKELLKIKNDKLKEFLRNQTDENYTDFKRSRAVLKREIRREKRNCW
FT                 KELIDSIDENMNAKTLWNTVKMVSGGRPAKNNLNLLNNKPLAQQFINQNFP
FT                 PITDIINNPPISDNLIKIDHLEIIKIIKSKKDHSTPGIDNLSFYILKHLNL
FT                 NLIIRFTELMNEVLNTGQIPNDWRTIRIIPLLKPNKDPDNVQSYRPLAMLN
FT                 VLIKLINNVIKNRLNNYIHEHEIIPKNSYGFKKHTSAINCVNTLIVKVNEA
FT                 KREGMVLAATFLDLTKAFDNVDINKLLKIMEQLKIPSEIINWVFSYLKERK
FT                 MILELNDGTKIIQISNKGLPQGCPLSPVLFNIYTSLIHNIAKEGEILIQFA
FT                 DDFTAIVIGFSTATVAEKMNNFLTRLSLQFKNLGMQINPNKSATIIFKNKY
FT                 DPTISIKLDNSRIPVVENHKILGVQVDHKLSFKSHINNSITKAKKKINLLK
FT                 MISRKRSGAHPNQMIKIYKAIVRPHLEYGLTIIGSVPKTTFKKLETVQHLA
FT                 IRTCLRQLNSTPNHVVLYESGEIPLKCRAELLTLKEIAKTFFYNNSLIENS
FT                 LQNIMSLDYLPKHTSYLERTASLNNYLFFQLIPRSRQNYNTTIHNKITVSN
FT                 EIKDLKKKNLNSITQKQMVLQLIEEKYKGVYQIYTDGSILNSLVGCGYYDA
FT                 QEKLSYSCKLKTGYTILSAEIVAIIKAIDYANRKNINELVIFTDSKNTCTL
FT                 LAKPFQTENSLIIKLLNDINQSDIQRIYVQWIPSHIGLIGNDRADHAAKMG
FT                 TTRNVEETIGYTLEDMFNLFKNEVNKQWQDQYEQISIDKGKFHYEHSKIID
FT                 NRPWFKGLNLSTIETIQIGRIRTGHVVTKNKLANWNLVANSRCDHCGDNED
FT                 LTHILHYCPKYESVRKNISILNNKTPIVNILINNNPGEYTQIVKYLKKINK
FT                 YV"
XX
SQ   Sequence 5659 BP; 2353 A; 985 C; 913 G; 1404 T; 4 other;
     cattctctcc aagctagtcg accagttcag acgatccttg acgagtgttg tgaattttaa        60
     ttttaatttt ccgcgaacgt ttcagaaaag tgtaaaataa actgactaac ctctagtgtt       120
     actgtatata ttagtgataa gattacatct aagttgttgt aagtattctc cattaagttg       180
     attttatagg gtgtttatta tttggtgtgc ttttcgggga tattttgtac aaaagaggga       240
     agggaaggga aaccgattat gggaacatga tggcggaggg aattagtgac aagatggagg       300
     acaatgattg gacacacgtg ctggcacgga agtcgaaggc taggcacaaa gacagagacg       360
     acgagaatga cagtgactac gacaggaaaa cgaaacggaa caaacacaat gaaacgaaac       420
     cgaaaaaaga caaataccat gcgactcggg ttttgactga cgacgacgac gacaatctaa       480
     atgacgaaaa cagaatacaa aatggagact cgaacacaaa caacgaaaat caagacaata       540
     acgcacacaa atcccaatcg aacaccggta ctaaacgcaa aactgaccaa ttcacaacaa       600
     aaagacaaaa caaggacaac accgatggaa wttacaatga cggctggatt aaaaatcaaa       660
     actacaagac atttattatc cacaaagaaa taaaggacaa ggaacagaac aacaatgtaa       720
     agtacccgca cccgatggaa gtggcaaaaa tgctgaaaaa cataggcgtg acgaaataca       780
     acacaatgaa aagtgtaggt agaggcaaat tccagattag cttcgaaaaa ccaagagatg       840
     cagagcaatt gttgaactcc aaacttctga cagacagttt tggtttctca attttcgtac       900
     ctactaggtt caaggagagc ataggggtgg taggggatgt acctccatcc ataacagatg       960
     atgaaataat tgaaaacagc agttgtgaaa acaatctaaa aatttacaaa gtggaaagga      1020
     ttaagaagag agtaggagaa aataagtttc agcccacata ttcgatcaaa atttttttca      1080
     aaggcgagac tctaccaaag tccattgaga tctacggtac tcatcgattt gtcgaaccat      1140
     acgtttttcc attgaaaatt tgttttaagt gttggcgatt tggtcatcga gaaaaatttt      1200
     gtaaatcgaa ggaaaccaga tgttgtaatt gtggacaatt ccataacgaa cagaattgcg      1260
     atacacccga acctaaatgt gtaaattgct caggaaacca caaggcttcg aataaggaat      1320
     gcccggaaag actgcgacag gacttaatca gacaagacat ggcagtaaat aaatcatcat      1380
     attttgaagc atctgacaaa tacccaaaac agaccaaaag taacctacaa actagactgg      1440
     attcattacg cgattttcca cgactggaag acaacagtca aaacagtacg acgaacgtga      1500
     gacaaaaaac caaacgaccg attaaccaaa caccatattt cacaacaccc caaaatgaat      1560
     ttaacagaca agacacaaaa cacgaatttc taacaaatcc atacaaaacc tctgaaatag      1620
     aaaaaatcac acaaatgatc aaagaagacc taattcgcca gttcaacctt aacaatatgt      1680
     tcgaaaaaat caaagctata caaaaaacca taatccaaag cacaaataaa acagatacaa      1740
     tagaacaaga tttgttactt attaatatca gcgaagaatt gaataaaata gttaacccgg      1800
     aagttactac tacagaatta aaataaaatc gaaaaactct tgaaatgcag gacaacttca      1860
     ggaaactgac catagtacaa aacaatgtca caagcttgcg accaatagat acaagagagt      1920
     ccattcaaaa cttcctctta aggcacaaca ctgatatagt aatgctaagc gaaatttggc      1980
     taaaaccgga agaaacttac aactttacag gatataaatt gttgacagaa accagatccg      2040
     ctggttatgg aggagtaggg tttctggtca agaatgaaat agaattcaaa cattttaaac      2100
     tacctaactt acagccaata gaatcaatag ctatagtcac acaaaacact ctacctaaaa      2160
     tattgttcat atccatttat attccacctc taccggttaa taataacgat atcagagaac      2220
     ctttgaagaa attatttgaa acaatagaca cttttcacgg atcagtaata ttagcaggag      2280
     atttcaacgc ccacaatcga ctctggaatc cttttcatga gaattgttca cgaggagaac      2340
     tgatagagca cttactagac aatcaggaac tagtactatt gaacgatggt acaagtactc      2400
     tgataaaatc acctaacact actccgtctg ccatagatct aacattcgca tcaccagaaa      2460
     tagcttgtaa aataaattgg aaggtacttg atgaagattt ctttagtaac catagagtaa      2520
     ttgaatttga tatagataac acagcacgta aatacgatta caataaagtt tatttcaata      2580
     aaaaacaagc cataaataaa ctgaatatgc tacaaccaca tgctttccat acgacagatg      2640
     atataacgga aataattaaa gagaaattca acgaatgtac gtacaccatc aacaataata      2700
     aaaacaggag cccaaagaaa tggtggacgg agaaaatcaa agaattattg aaaataaaaa      2760
     acgataaatt aaaggaattt cttagaaacc aaacagatga aaattacaca gactttaagc      2820
     gaagtagagc cgttttgaaa agagaaatac gaagagaaaa aagaaattgt tggaaggaac      2880
     taatagattc aatcgatgaa aatatgaatg ctaaaacact ttggaacaca gttaaaatgg      2940
     tcagtggagg tcgtccagcg aaaaataatt tgaacctttt gaataataaa ccattagctc      3000
     agcagttcat caatcagaat tttccaccaa tcacagacat tataaataac ccccccatat      3060
     cagacaattt aataaaaatt gatcacttag aaattattaa gattatcaag tcgaaaaaag      3120
     atcattcaac tcctgggata gataatttat cattttatat attaaaacac ctaaatttaa      3180
     atctgatcat ccgattcaca gaactaatga acgaagttct taacacagga caaataccca      3240
     acgactggag aacaattaga ataataccat tgctcaaacc aaacaaagat ccagataatg      3300
     tacaatctta caggccatta gctatgttaa atgttttgat caaacttatc aacaatgtaa      3360
     ttaaaaatag actgaataat tatatacatg aacatgaaat aattcctaaa aattcatatg      3420
     gttttaaaaa acacacatcc gcaataaatt gtgtaaacac tctcatagta aaggtaaatg      3480
     aagcaaaaag agaaggtatg gtactagcag ccactttttt agatttaacc aaagctttcg      3540
     ataatgttga catcaacaaa cttttgaaaa taatggagca actaaaaatt ccgtcagaaa      3600
     ttataaattg ggttttttca tacttaaaag aaagaaaaat gatcttagaa ctaaatgatg      3660
     gcactaaaat wattcaaatt tcaaataaag gcctaccaca aggatgtcca ttatctccag      3720
     ttctttttaa catttataca agtttgatcc acaatatagc taaagaaggt gaaatcctca      3780
     tacagtttgc cgacgatttt acagcaattg taataggttt tagtacagca acggtagcag      3840
     aaaaaatgaa caactttctt acaaggttgt cattacagtt taaaaattta ggtatgcaaa      3900
     tcaacccaaa caaatcagca acaataatat ttaaaaataa gtatgatcct accatttcga      3960
     taaagttaga caattcacgt attccagtag tagaaaacca taaaatttta ggggttcaag      4020
     tagatcacaa gttatcgttt aaatcacata ttaacaatag tataactaaa gcaaagaaaa      4080
     aaataaattt actcaaaatg attagtagaa aacgtagtgg agctcatcca aaccaaatga      4140
     taaaaattta caaagcaata gtaaggcccc atctagaata tggtttaaca attataggct      4200
     cagtaccaaa aacaacattt aaaaaactag aaacagtgca gcatctagct atcagaacct      4260
     gtcttaggca attaaattcc acacccaatc atgttgtatt atatgaatcc ggagaaatcc      4320
     cactcaaatg tagggctgaa ttattaactt tgaaagaaat tgcaaaaacc tttttttaca      4380
     ataatagcct gatagaaaat agtttgcaga acattatgag tttagattat cttccaaaac      4440
     acacttcata cttagaaaga acagcttcat tgaataatta cttatttttt caactcatcc      4500
     caagatcaag acaaaattac aacactacta tccacaataa aattacagta tcaaatgaaa      4560
     taaaagatct caaaaagaaa aatttaaaca gtattacaca aaaacaaatg gtattacaat      4620
     taatagaaga aaagtataag ggagtttatc aaatatacac agacggttct attttaaatt      4680
     ctttagtagg gtgcgggtac tatgatgctc aagagaaatt atcatatagt tgcaaattaa      4740
     aaacaggata cacaattttg agtgcagaaa tagtggccat tatcaaagca atagactatg      4800
     ccaatagaaa aaatataaat gaattagtaa tatttacaga ctctaaaaac acatgcacac      4860
     ttcttgcaaa accattccaa acagaaaaca gcttaataat aaaattgttg aacgatatca      4920
     atcaatctga tatacaaaga atttatgtac aatggatccc aagccatata ggattgatag      4980
     gaaatgatag agcggaccac gcagccaaaa tgggcacaac aaggaatgta gaagaaacta      5040
     taggctatac actcgaagac atgtttaact tatttaagaa tgaagttaat aaacaatggc      5100
     aggaccaata cgaacaaata tccatagaca aaggaaaatt ccattacgag cactcgaaaa      5160
     ttatcgacaa tagaccatgg tttaaaggac tgaacttatc aactatagag acgatacaaa      5220
     ttggacgaat aagaactggt catgtagtga ctaaaaacaa actagcgaat tggaatcttg      5280
     tcgctaattc ccgatgcgat cactgtggtg ataatgaaga cctaacacac attctacatt      5340
     attgtcccaa atacgaatca gtccgtaaaa acatatctat acttaataat aaaacaccta      5400
     tagtaaatat attaatcaat aataatcccg gggagtacac acagatagtg aaatacctga      5460
     aaaagatcaa caagtatgtt tgagaaaaat taaataaagg atgtaattat gtcaagagta      5520
     tsaaacagta aaaataccag aggggcttca gtttcgsgcg acctattcga ttaaagtttc      5580
     aacaccacta ctatcttcac aacccttggc tttatggatc aaaaggtctg agccatcaaa      5640
     ccgagagaaa aaaaaaaaa                                                   5659
//
ID   Outcast-21_AAe repbase;    DNA;    INV; 5681 BP.
XX
AC   .
XX
DT   08-JAN-2019 (Rel. 26.01, Created)
DT   08-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Outcast non-LTR retrotransposon from Aedes aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-21_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5681
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5681
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 520-520 (2021).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           298..1746
FT                 /product="Outcast-21_AAe_1p"
FT                 /translation="MASGGEPPDKGGGSKDWNMEMQNEQTQPQNGKTAELK
FT                 GQQDENNNAKISYTYVRSDVGPYRVFIELKNNTNGKASINKYTLGSYLRKI
FT                 QGIHTYIQELQYAGKHKVIAILTNPEKANQLVTEINNSTSAYRAYVPRHVV
FT                 SITGVITGIPIDLTEQEIQDDIQSKVPVMSVKRLHRYADGNKVLSLRVSVT
FT                 FRAKELPDSVKVFCCPTRVYPFAQKLIFCTKCLRYGHRTENCRGRERCRNC
FT                 GQTHELNEEYANCQEQQKCIYCKSTDHRSGATICDETQRQKALKSIMAKKN
FT                 LTQLEARRLLPAKISNYYEPLSRQDEFPSISNSFANTVTRSQKPQRSRQRS
FT                 RSNEDDKRMTSNAGHQQSKNTTTNEKDEEDYSRLVKRARQNEGFGTKTGAI
FT                 RKQIVQQYQLPTTPGVGLNNTQKTTETEKWNQIVQKEKENAQQEAKQHINS
FT                 VLMKFYTEFIVREGKDSPMADRLKNWSKEHIDLESVII"
FT   CDS           1980..5567
FT                 /product="Outcast-21_AAe_2p"
FT                 /translation="MEKCLKILQCNIQSVYKNKEEISRVLREGNFVVAMLS
FT                 ETWTALDLEDTNKYSISKYHRILCSREDGYGGAAVYIRNDYGYQPISLPAL
FT                 NKHTQAVAVKVLKLNLVIVSVYFSPALTGEAFEEDVTKIFDSLRNERRVLV
FT                 GGDWNAHHQIWGNKTNDRKGTIMSDLIATSDVVLMNDGSSTFIPIELNKQP
FT                 SAIDLTLCSPPLLTELTWQTMGHGIGGGHHIAIEIRLENVEHKEEYIYNNK
FT                 KINEGIAKLNEESITTINDLQNAVNKIQKSSRTKNTHTPKFWWCETVEQAW
FT                 LEKRDARRNFNRMSTLENLLILKKKAAWFQKRKREEMKKKIEELPQQISPF
FT                 MSSKELWNRINRLTGKNGRKRENNIVHEDEGLANEFLDQHFGPHEVRYPGG
FT                 YGIIPAYDIINQEKWNDILSRKKNTAPGHDKVTYEMLRRLQPGVVRNIIKD
FT                 LNSMWRNLYLPNPMKIITVVAIPKPGKPQHTIQGKRPISLVPTMTKVINTA
FT                 VLDEMQKYLTKHKLIPDKSFGFKKGVSTTTCLSFVVNAIKGAKRENLVVAA
FT                 IFVDLSNAFNTVKTEKLEETMVAKGIPQEISSWVTEFLRNRQINMRVNEKV
FT                 ITRQISDGLPQGDVMSPTLFNVYTSQLHDIKEEGVILVQYADDFGIIIKGK
FT                 NLQEVNQRGQRYLDAFSINAKELSLKINPNKTKAMIFICSDKKVDIKIDGT
FT                 TIETVRVHRYLGVQFDRSLSFGPHLREITVKIHDRLNMLKVISGIRYGGHP
FT                 QSLISVYQALIRSVFEYGGTVTHNAAKTNKNKIIIANNQCLRKVTGCTRTT
FT                 PINTLLALSAQQPIQYRQEYLTSREIIRCMVDNNVVAKQLQNLEGSEEQDR
FT                 LSYMENVYLKHRDTFDALMIRTEGQQTNVDIGVELEGMTMAKRNCSSIQMK
FT                 QLALYTINGKYRNRPKIYTDASKDRNVCGIGIFDEKMKTRYCYKLQNETSV
FT                 TSAEVIAIQTALTIIDQNEAHDYVVLTDSKSACLMLLEAQAEDSRIDVMQD
FT                 ILEKATRWNASIQWVPSHINLEGNDVADLLAKHGTEETAINMTNKLFDKDA
FT                 SWKMKHEARNAANTWYQSYAEEKGQKFYQLQEQIESKPWFYGRCFDNREIR
FT                 LLNRLMAGHDYSRYWLAKMKIAENNLCEICDEQETAEHCILHCVRYGHIRA
FT                 TYSFDCRYRNLIEMFKTKNEDLLKEICRFVNECRLNI"
XX
SQ   Sequence 5681 BP; 2142 A; 1095 C; 1292 G; 1151 T; 1 other;
     cattcgagtc taaagcgtcg gtcggtagac acgtgtaccg tgcaattggt ggaagtttct        60
     cgaaaatttt gtaaaaagtt atcgtgcatt gagaaagcaa ttacatctgc ggtgcaataa       120
     tagcatttaa ttagtgaata ttgagccaaa atcgtgattt attaagggga aacagtgaaa       180
     gttaaaaggc gagaggacgc caaggcgaat tgccgaaagg agttcgccat tttaaaagaa       240
     gcaagaatca gaaaaagaga agaagaagag aaaaagaaaa gtgcggtaga atacaagatg       300
     gcctccggcg gcgagccacc ggacaaaggt ggtgggagca aggattggaa tatggaaatg       360
     caaaacgaac aaacccaacc tcaaaatggg aaaactgcag aacttaaggg gcaacaagat       420
     gaaaataaca acgcgaaaat cagctacaca tatgtcagaa gtgacgttgg cccatacaga       480
     gtattcatcg aactcaaaaa caacaccaat ggaaaggcat ctatcaacaa gtacaccctc       540
     ggctcatacc tgaggaaaat acaaggaata cacacataca tccaggaatt gcagtacgca       600
     ggaaaacaca aagtgatcgc catactaacg aatcccgaaa aagcaaacca actagtgacc       660
     gaaatcaaca acagcaccag tgcataccga gcatatgtac cccgtcacgt cgtcagtatc       720
     acgggtgtca ttactggtat cccgatcgat ctaacggagc aagaaattca agatgacatc       780
     cagtcaaagg ttccagtgat gagtgttaag cgactacacc ggtacgcgga cggaaacaaa       840
     gtactgagcc tcagggtgag tgtgaccttc cgagcaaaag aactgcctga tagtgttaag       900
     gtattttgct gtccaacaag agtttacccg tttgcacaaa agcttatttt ctgtacgaag       960
     tgcctgcgat acggacatcg aaccgaaaac tgccgaggaa gagagaggtg taggaactgc      1020
     ggacaaacac acgaactaaa tgaagagtat gccaactgcc aagaacaaca aaagtgcatt      1080
     tactgcaagt cgacagacca ccgatccggt gcaacgattt gtgacgaaac acagcgacag      1140
     aaagcactaa aatctatcat ggcaaagaaa aatctaactc agctggaagc acggcggttg      1200
     ctacccgcga aaatttccaa ttactatgaa ccactcagca gacaggatga gtttccatcg      1260
     attagtaact cctttgctaa cacagtcacg agaagtcaaa aaccgcagcg gtcgagacag      1320
     cgatccagat caaatgagga cgataaacgg atgacgtcaa acgcaggaca ccaacagtca      1380
     aagaatacaa caaccaacga gaaggacgag gaagattaca gtagactagt taaacgagcg      1440
     cgacaaaacg aggggttcgg cacaaaaact ggagccatac gtaaacaaat agtgcagcag      1500
     tatcaacttc ccaccacacc aggagtgggg ctcaacaaca cacagaaaac caccgaaacg      1560
     gaaaagtgga accaaatagt ccaaaaagaa aaggaaaatg cccagcaaga agccaaacag      1620
     catatcaaca gtgtgcttat gaagttctac acggagttca ttgtccgtga aggaaaagat      1680
     agcccaatgg cagataggct taaaaactgg tcgaaagaac atatcgattt ggaatcagta      1740
     attatttaag aactagaagt gaaaagtgaa aaataatatt aaaaaaaaag aagtaagaaa      1800
     aggaaaagtt tgatgaaagg tagaagaaaa gaagaaaata agtgagaaaa aaggaaataa      1860
     gtgagaaaaa gaagagaata agtgagaaaa gaagataaga agaaaaagag taagataagt      1920
     gaaaaaaggg gggaaatttt ttgaaacgaa gaaagagaga aatacaaatt aaacagaaaa      1980
     tggagaagtg tctaaaaatt ttacaatgca acatacaatc agtgtataaa aataaagaag      2040
     aaatttcccg agtgcttaga gaaggaaact tcgttgtagc gatgttatct gaaacctgga      2100
     ccgcgttaga tctagaagat accaacaaat acagcatatc aaaatatcat cgaattttgt      2160
     gctcaagaga agatggctat ggaggcgcgg ccgtctatat ccggaatgat tatggatacc      2220
     aaccaatatc actcccagcg ctaaacaaac acacccaggc agtagcagtt aaagtgttaa      2280
     aactaaattt agtcatagtg tcggtctatt tcagtcctgc cctgactggt gaagcattcg      2340
     aagaagacgt cacgaagata ttcgacagtt tgaggaatga acgaagggtt ctagtcggtg      2400
     gagactggaa cgcacatcac caaatatggg gaaacaaaac gaacgataga aaaggaacta      2460
     taatgtccga cctaatagct actagtgacg tcgtcctaat gaatgatgga tcaagtacat      2520
     ttataccgat agaactgaac aagcaaccat cagcaataga cctgacatta tgttcacccc      2580
     cccttctgac ggagcttacg tggcaaacaa tgggtcatgg tattggagga ggacaccata      2640
     ttgccataga aatccgcttg gagaatgtag agcacaaaga ggaatacatt tacaataaca      2700
     aaaaaatcaa tgaaggaata gcaaagctga atgaagaatc aataacaaca ataaacgatc      2760
     tacaaaatgc ggtaaataaa atacaaaaaa gcagcagaac taaaaataca cacacaccta      2820
     agttctggtg gtgcgaaacg gtagaacagg cgtggttgga gaaaagagac gcaagaagaa      2880
     actttaacag gatgtcaacg ttggaaaatt tgctgattct aaaaaagaag gcggcatggt      2940
     tccagaaacg taaacgagag gaaatgaaga agaagataga ggaactcccg caacaaatat      3000
     caccatttat gtcatccaag gaactgtgga atagaataaa ccggctgact gggaaaaacg      3060
     gacgcaaaag ggagaacaat atcgtacatg aagacgaagg gctagcaaat gaattcctgg      3120
     atcaacactt tggtccacat gaagtgaggt acccaggggg gtacggaata atacctgcat      3180
     acgatatcat caaccaggaa aaatggaacg atattttgag ccgaaagaag aatacagcac      3240
     caggacacga caaggtaacc tatgaaatgt tacgaagact acagccagga gtagtccgga      3300
     acataataaa ggacctcaat agtatgtgga ggaatttgta tctaccaaat ccaatgaaga      3360
     taatcacggt ggtggcaatt ccaaagccag ggaaaccaca gcacaccatt caggggaaaa      3420
     gaccgatatc gctcgtacca acgatgacaa aggtgataaa cacagctgta ttagacgaaa      3480
     tgcaaaaata cttgacgaaa cataagctga taccagacaa gtcattcggc tttaaaaaag      3540
     gtgtgtcaac tacaacatgt ctatcctttg tggtcaatgc gattaaagga gctaagcgtg      3600
     aaaacttggt cgttgccgca atatttgtcg atctgtcgaa tgcctttaat acggttaaaa      3660
     ctgaaaaact cgaagaaaca atggttgcta aaggcattcc gcaagaaatc agcagttggg      3720
     ttactgaatt cctccgcaat cgacaaataa acatgagggt aaatgaaaaa gtgattacga      3780
     gacagattag cgatgggctt ccccagggtg acgtcatgtc cccaaccttg ttcaacgtct      3840
     acacaagtca gctacacgat atcaaggaag aaggagtgat tttggttcaa tatgcggacg      3900
     attttgggat cattatcaaa ggaaagaatc tacaggaagt gaatcaacgt ggacagagat      3960
     acttggatgc tttctcgatt aatgccaagg aactgagtct taagatcaac cctaacaaga      4020
     cgaaagcgat gatattcatc tgcagcgata aaaaagtcga catcaaaatc gatggaacaa      4080
     ctatagaaac agttcgtgta catcgatacc ttggagtaca gttcgacaga tcccttagtt      4140
     ttggtccaca tcttcgagaa attacagtga aaatacacga taggcttaac atgcttaagg      4200
     tgataagtgg aattcgatat ggaggacacc cgcaatcgct gatatcagtt tatcaagcac      4260
     tgataagaag cgtgtttgaa tatggtggaa ctgttacaca caacgcagca aaaacaaata      4320
     agaacaaaat cattattgca aataatcaat gtcttcggaa agtcacgggt tgtacgagga      4380
     caactccgat aaacacacta ctggcactgt cagctcaaca accgatccag tatcgtcaag      4440
     agtacttaac ttcgagggag ataatcaggt gcatggtgga caacaatgtc gtcgccaaac      4500
     agctacagaa tttggaagga agtgaagaac aagatcggct ttcatacatg gaaaatgtct      4560
     atctgaagca tcgagatact ttcgatgcac tcatgattag aacggaaggg caacagacca      4620
     atgtagacat cggtgtcgaa ctggaaggca tgaccatggc caaaagaaac tgtagctcaa      4680
     tacaaatgaa acagttagct ttgtatacca ttaatgggaa atacagaaat cgtcctaaaa      4740
     tatatacaga tgcttccaaa gacaggaacg tctgtggtat aggaatcttc gatgaaaaaa      4800
     tgaaaacgag gtactgctat aaactacaaa acgaaaccag cgttacatct gcagaggtga      4860
     tagccattca aacagcactc acaatcatcg atcaaaacga ggctcatgat tacgttgtac      4920
     tcaccgattc caaatcggca tgcctgatgc tgctggaagc gcaggcggaa gacagcagga      4980
     ttgacgtcat gcaggatatt ctagagaagg ccactcggtg gaacgccagc atacaatggg      5040
     taccaagtca tattaacttg gaaggaaacg atgtggctga cctcctagcc aagcacggta      5100
     ctgaagagac ggcgatcaat atgaccaata agctgttcga taaagatgct tcctggaaga      5160
     tgaaacatga ggcgagaaat gctgctaata cctggtacca atcgtacgcc gaagaaaaag      5220
     gacagaaatt ttaccagctg caagaacaaa tcgagagtaa accttggttc tatggaagat      5280
     gtttcgacaa ccgagagatc cgtttactaa acaggctgat ggcagggcac gattattctc      5340
     gctattggct tgcaaagatg aagattgctg agaacaacct ctgtgaaata tgtgacgaac      5400
     aagaaactgc agaacactgc attctacact gtgttcgata tggacacatc cgcgcaactt      5460
     actcgtttga ctgccgatac cgaaatttaa tagagatgtt caaaacaaaa aacgaagatc      5520
     tactgaagga gatttgtcga tttgtwaatg agtgtcgatt gaatatctga caccactaac      5580
     ggacaacaac ccaggagcag ggcatatagt caatgacact agcccttcac agcgcgacag      5640
     acagtttgtc agtcgcgacc agagttaaga agaagaagaa g                          5681
//
ID   Outcast-2_DAn repbase;    DNA;    INV; 1120 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1120
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 397-397 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1007
FT                 /product="Outcast-2_DAn_1p"
FT                 /translation="IESIRISNSPPLTCSKIKALTDFFMGSAQSKHATSTD
FT                 IINKIFTEKLHEIEKRGLDVFFTDGSVTDQHTSAAFLHWDNSHWESFYTNR
FT                 ILSSLSAELIAIDKTIDYAISKGIARLAILTDSKNSAMALIKPCHVNYMVY
FT                 EIKKKIARQPQLTLVELHYIPSHCKIQGNDFVDQAAKNAHLQGTFTTIAWS
FT                 IRDATSAIHNEIKKEWEREYAEFASSKPRGYCNVFPTLLNKPWFSQPSCNL
FT                 EPKNIRVLNRIXSGNCFENATLAKMKVVNNNRCESCDTIDNASHIILSCSK
FT                 YNATRRNFPTLLKYNDIHEFLRLENIDKYNIITDFLDKININI"
XX
SQ   Sequence 1120 BP; 412 A; 274 C; 187 G; 242 T; 5 other;
     ttattgaaag catcagaatt tcgaactcac cacctctcac atgctcaaag ataaaagccc        60
     tcacagattt tttcatgggc tcggcccaaa gcaaacatgc tacaagcaca gatattataa       120
     acaaaatctt tacagagaaa ctccacgaaa ttgaaaaaag aggattagat gtcttcttca       180
     cagatggatc cgtcaccgac cagcacacca gcgcagcatt tctacactgg gacaatagcc       240
     actgggaatc cttctacaca aacagaatcc tgtcgtcatt atcggctgaa ctaatagcca       300
     tcgacaaaac aattgactac gccataagca aaggaatagc ccggctggct atactcacag       360
     acagcaaaaa tagtgctatg gcattaatca agccttgcca cgtcaactat atggtatacg       420
     aaatcaaaaa gaagatcgca agacaacctc agcttacttt agttgagctc cattatattc       480
     cgagccactg caaaatacaa ggaaacgact tcgtggacca ggcagccaaa aatgcgcacc       540
     tccaagggac cttcactaca attgcctgga gtatcaggga cgccacatca gccatccaca       600
     atgagatcaa aaaagaatgg gagagagagt atgccgagtt cgcatccagc aagcccagag       660
     gatactgcaa cgtctttcca acattactga ataagccatg gttttcccag ccatcatgta       720
     acctagaacc aaaaaacatc agagtattaa atcgaatttt wagtggaaac tgcttcgaaa       780
     acgcaaccct tgcaaaaatg aaagttgtaa acaacaacag atgtgaatcm tgcgatacta       840
     tcgataacgc ttcccacata atcctcagct gttccaaata caatgctacc agacgaaact       900
     ttccaacact tttaaaatat aatgacatac acgagttcct aagactggaa aacatcgaca       960
     agtacaacat aataacmgac tttctcgata aaattaatat taacatctaa tcaatcccaw      1020
     acaaacttaa gattggcgtt ttccttgcac taagggcggc caaataatcc cwcgactcca      1080
     gaaggcgtcg cggtaactta aaaccaaaaa aaaaaaaaaa                            1120
//
ID   Outcast-2_DBp repbase;    DNA;    INV; 827 BP.
XX
AC   .
XX
DT   15-MAY-2012 (Rel. 17.05, Created)
DT   15-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-827
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 725-725 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 827 BP; 280 A; 180 C; 135 G; 232 T; 0 other;
     aaaaaagagg gctacgaccc caaaattctt aagcatttca ttttcaagac tggtattatt        60
     tttcaaattc caattaaatt tactactgac gatttaaaag aatttatttc atccccagtg       120
     cccattcacg aaattattag agttaataga aaaaatgaaa acaaagaatt tgtccccacg       180
     tccagggtta agattatttt tgaaggctcc cagattccag aggaaattga cttcctttat       240
     acaaaggtta aagtggaacc ttatgttcct tttagccaat gttttaggtg cttcagattt       300
     gggcattttg ctcagcactg taagcagact gaagagaagt gtcgcaattg ttccctttct       360
     catccaagag aagagacatg tacgacactt aaatgtataa actgccactt ctcccacacc       420
     gctacctccc ttgaatgtcc ggcaaggaaa agagcgtttg ccatacagaa atgtatgaca       480
     tcgcaaaacc tatctagagt ggaagttaga ataagatatc ctgctctctt tgataaacta       540
     gctccatcca ctcctgagat ttttaatacc accgaattcc ctctactaaa gcccctaaaa       600
     attctgcaac cccggttttg caggataaca ctaaattagc tgctgaatct attcacaaat       660
     atttacccta caacaaaata gctaaaaatt ataaaaacaa gtcaatcgaa ggtagaaagt       720
     cgcaagagac gatgtccaac tggaaacaaa ttataaagat cacgaaattc tcttgaggaa       780
     agatttgttc cccttcaagg ggctcctctt tccaaccaac cggctga                     827
//
ID   Outcast-2_DSuz repbase;    DNA;    INV; 5784 BP.
XX
AC   .
XX
DT   07-JUL-2021 (Rel. 27.01, Created)
DT   07-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5784
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 620-620 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~98% identical to
CC   that of Outcast-1_DBi.
XX
FH   Key           Location/Qualifiers
FT   CDS           194..1714
FT                 /product="Outcast-2_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MASSEAKGKNPYSELSNVKRPKLSPLNKKKKPTDNNL
FT                 VESESEEVEMKEVNDPVSHPSPTSQVSGRAITDPASKEEKRESGNLENNGY
FT                 SYSSAHKGPFVVYIDKIGETNGENRPRRVPINPLELNAVLLKLNIKDIISV
FT                 NKIGYGRCKAECKSATAANSILSSNLKSNGYEPKILKHFIFKMGIIFNIPT
FT                 KFSDSELKEYISSPVPIQEIIRVKTKDRDNKDIFINTPRVKILFKGTQIPN
FT                 EIVFLYTKINVSPXVPFSQCFRCFRFNHFAQHCKQTEQKCSKCSLSHSREQ
FT                 QCSQLVCANCKQNHPATSLECPARKRAYAIQKCMTLENLSRNETKIRYPSL
FT                 FQILDEVDTNDLTHFPQPTWQRKSAIPVLQNNTKIATQQIFAQNPFNKVVK
FT                 NSLNKKNEEKNSRDTMISWKAALHEHEYTPNEKFSHIHSNPPSSPPSSQPF
FT                 SDNPALEAAENSLNQLASEISSFLVNETTNLVPESRNFLENLRNRIALTNS
FT                 KIDLFKINQLV"
FT   CDS           1869..5453
FT                 /product="Outcast-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase, and ribonuclease H."
FT                 /translation="MTIKILQYNIQSLTANNNKQLLELFLVNNNIDIAILS
FT                 EIWVSNNSMCSLANYNFVCKPRNDGYGGVGIYLKKHIRFRQINCDIXLEVI
FT                 GIRTINLRNNINIFSVYAAPSTDISSFQQGCDDLFTIAAQSSGLTVIGGDF
FT                 NAKSSIWGNNTQDARGGILENSLLHSGFFCLNNGSPTYSHNPSYSSTLDLT
FT                 FINSSNLCSNWSSINSKISNSNHFPILIEIDQISASTNIIKFNHNKIIKDF
FT                 SKIQITTLDSISNSSQTIHXNNSIKINTNNRYVPKKYWDEVCEKLFRLRNA
FT                 CRQKYFKSKLQSDAIAYINSNKKLNNYXYKMRKENLNKLAEDISNPSSLKD
FT                 MWNXIKNLKLYKQIKPSNSAISDSEHRDFLNQIATAPNTAMCPDVSFSPDL
FT                 LYRYANSNFSARELLDFLNSRNPDSAKGLDNISYRMLLSLPLNQIEKLVSL
FT                 LNITLDNGVIPXQWRKIRVIPVPKKNLDSSIITNNRPICLLSVTFKCLEGL
FT                 IKLRMEEHINKNKILPPRSYAFRKNHSTAQCINDVLNNIANLKARGFHVTA
FT                 AVLDLSKAFDAVNIPILGSKLVSLGFDHNHIYFIINFLSKRVLTMGTAEVT
FT                 VNKGVSQGSCLSPILFNLYTAELHSLSNDHDSILFQYADDFFLVCYDKVFS
FT                 MAEEKLEQKVNRFMELCNINNLTFNPDKSATIHFNLRKKPLSILCNNIILK
FT                 NVNSVNYLGRVISSNNSSVQHVNKTISKSNQTNMFIQMLSGCRFGVHPSKS
FT                 LLFYKAFIRTRYEYACSSFSNISKSVQNNINKHANFHLRKALGLIKSTPIN
FT                 IIYNLAAELPPAYRIKFATAKELAKTFAHGLPSASLLSNSFVAKNTSYSRI
FT                 YAEFKNILDSIAPICPYSLSTRKISVDTNFFKGTCXNKKMANETIILSLFK
FT                 EKIRGLTSKNMEIIFTDGSVSENFTGSAFVHLNSNSIKSFYTDKKLSSLTA
FT                 ELTALEKAIDFGISKKFSKIAILTDSLGAIQTIKNANSKNCISQCILKKVI
FT                 NNPTLLSIEFHHIPSHSNIWENDLADTAAKNSRINGSFAPVRWTLKDAINH
FT                 MFAQIKQDWEREYSLFSLERNKGYSLLSPYTTSKPWFKNKEDLFNRIETKT
FT                 LNRILSGHAFDKYTLSKMKVYDNALCDSCNVNEDISHILLNCSKYTPTRQN
FT                 YPTLLKYNDIYRLLGNEPIENWTSITGFIRAANINI"
XX
SQ   Sequence 5784 BP; 2011 A; 1159 C; 854 G; 1749 T; 11 other;
     cattcgcgtg ctgactgttg catgcaacgg aggtgtttga gcagtgtgtg atactaaccg        60
     atttttactt tttctgtttt tttcaaaaca aaaatataac gtaatatata cgtttaaata       120
     ctttttataa atatttgtct gttgttattg gttaaataaa caatcaatta cgggtaaagt       180
     tactccaaga aaaatggcct cctccgaggc caagggtaaa aacccttact cggagctgag       240
     caacgttaaa aggccgaaat tatcgccctt aaataaaaag aaaaaaccta cggataataa       300
     tttagtggaa tcggaaagcg aagaagttga gatgaaagaa gtcaatgacc ctgtaagtca       360
     tccgagtcca accagccaag taagtggtag agctataacg gatcctgcta gcaaagaaga       420
     gaagagagaa agtggaaatt tggaaaacaa cggatactcg tacagcagcg ctcacaaggg       480
     accctttgtg gtctacatag acaaaattgg tgaaaccaat ggcgaaaatc gacctagaag       540
     agttcctata aatcctcttg aactaaatgc tgtcttgcta aaattaaata ttaaagatat       600
     aatttcagta aataagattg gttatgggcg ctgcaaggct gagtgcaagt cagcaacggc       660
     agctaatagc atcctgtcct caaatcttaa aagtaatggt tacgaaccta aaattcttaa       720
     gcatttcatt tttaaaatgg gtattatttt taatattccg acaaaatttt ccgactctga       780
     acttaaggag tacatttctt ctccagtacc tattcaagaa ataattcgtg tgaagactaa       840
     ggaccgagac aataaagata tttttattaa cactcctagg gttaagattc tttttaaagg       900
     cactcaaatt cccaacgaga ttgtcttcct gtacaccaaa attaatgtta gtccatwtgt       960
     tccttttagt caatgttttc gttgttttag atttaatcat tttgctcagc attgtaaaca      1020
     aactgagcaa aaatgcagta aatgttctct ttcgcattca agagagcaac aatgtagtca      1080
     actcgtttgt gccaactgca aacaaaatca cccagccacc tctcttgagt gccctgctcg      1140
     taagagagcg tacgctatcc agaaatgtat gactcttgaa aatttatcac gaaatgaaac      1200
     gaagattagg tacccctctc tcttccaaat tttagatgaa gtcgacacca acgacttaac      1260
     ccacttcccc cagccaacat ggcaaagaaa atctgccatt ccagtgttac aaaataatac      1320
     caaaatagct acccaacaaa tatttgcaca aaaccctttt aataaggttg ttaagaactc      1380
     tcttaacaag aaaaacgaag agaaaaattc acgcgacact atgatcagct ggaaagctgc      1440
     tcttcatgaa catgagtaca ctccaaacga aaagttttct cacattcatt ctaatccacc      1500
     tagttcccca ccctctagtc aacctttctc agacaatcca gctcttgaag ctgcggagaa      1560
     tagtttaaat caattagctt ctgaaatatc ctcatttcta gtcaacgaaa caaccaattt      1620
     agtacctgaa tcaagaaact ttttagagaa tttaagaaac agaatagcac ttacaaactc      1680
     aaaaattgat ttgttcaaaa ttaatcaact tgtttaattt tgaataataa cttttttatt      1740
     tatttattta tctatttact tatttttwtc tgttaaatta attgtttttt atttattcgt      1800
     ttttcttttc tctttcattt gtctatctgt tttcatttga aaataaaaca taaaattata      1860
     ttatttaaat gacaataaaa atcctacagt ataatattca gagcttaact gctaataata      1920
     acaaacaatt actagaatta ttcttagtaa acaacaacat agacatagca attttatcag      1980
     agatatgggt ttccaataac tccatgtgta gcttggcaaa ttataatttt gtatgtaagc      2040
     cgcgtaacga tggttatgga ggcgttggaa tttacttaaa aaaacatata cgctttagac      2100
     aaatcaactg tgatattagm ttagaagtca ttggtatccg tacaattaac ctaagaaata      2160
     atattaatat tttcagtgtc tatgctgctc ccagcacaga cattagttct tttcaacaag      2220
     gttgcgatga tctatttact attgctgctc aatcgagcgg tctaactgtc ataggtggtg      2280
     actttaatgc caaatccagc atttggggta ataatactca agatgccaga ggcggcattt      2340
     tagaaaattc cctcttacac tccggtttct tttgccttaa caacggctct ccaacttact      2400
     ctcataaccc atcctatagt tcaacactcg atctcacttt cattaatagt agcaatcttt      2460
     gttctaactg gtcctcaata aattctaaaa tatcaaatag caatcatttc ccaatcttaa      2520
     ttgaaataga ccaaatttct gcttcgacta atattattaa atttaaccat aataaaataa      2580
     tcaaagactt ttccaaaatt caaattacaa cgttagatag catttccaac tcatcccaaa      2640
     caatacacts taataattca attaaaataa atacaaacaa tagatatgtt ccaaaaaagt      2700
     attgggacga ggtctgtgaa aaattgttta gattaagaaa cgcgtgcaga caaaaatatt      2760
     ttaaatccaa actacaatct gatgctattg cctatattaa cagtaataaa aaacttaaca      2820
     actattwtta taaaatgaga aaagaaaacc tcaataagct ggcagaagac atttccaacc      2880
     cctcttctct gaaagatatg tggaacawaa tcaaaaatct taaactttat aaacaaatta      2940
     aaccgtcmaa cagtgcaata tctgactcag aacatagaga ctttctcaat caaatagcca      3000
     cagcwcccaa cactgcgatg tgtcctgacg tatctttttc tcctgatctg ctttatagat      3060
     atgccaactc taatttctca gcgcgtgaac ttcttgactt cctaaactct cgtaacccag      3120
     actcggctaa gggtcttgac aacatttcat acagaatgct tctatctcta cccttaaatc      3180
     aaatagaaaa actggtatcc ctgctaaaca ttactctaga caatggtgtt attccagawc      3240
     agtggcggaa aataagggtt atacctgttc ccaaaaaaaa tcttgactct tcaattatta      3300
     ccaacaacag acctatctgc cttctaagtg tgacttttaa gtgcttagaa ggtttgatta      3360
     aattgcgtat ggaagagcac attaataaaa ataaaattct gccaccaaga tcctatgcgt      3420
     tcagaaaaaa ccattctact gcccaatgca tcaacgatgt actaaataac atagccaacc      3480
     taaaagctcg tggtttccac gttaccgcag ctgttttaga cttaagtaaa gcctttgatg      3540
     ccgtcaatat ccctattctg ggtagcaaat tagttagttt gggtttcgac cacaatcata      3600
     tttatttcat tataaacttc cttagtaaaa gagttctcac tatgggtact gcagaggtta      3660
     ctgtaaacaa aggagttagt caaggtagtt gtctgagtcc aatcctcttt aatttatata      3720
     cagctgagct tcacagctta agtaatgacc atgacagtat tctgttccag tacgctgacg      3780
     acttctttct agtctgttat gacaaagtct tttcgatggc tgaagagaaa ttagaacaaa      3840
     aagtaaatag atttatggaa ctgtgcaata ttaataatct tacttttaat ccagacaaat      3900
     cagccaccat tcattttaat ttaaggaaaa aacctttaag tatcttgtgc aataatatta      3960
     ttttaaaaaa tgtaaatagc gtaaattatt taggtagagt cataagttca aacaactcgt      4020
     ctgttcagca tgtaaataaa acgatctcta aatckaatca aacgaatatg tttattcaaa      4080
     tgctcagtgg ctgccgcttc ggagtacatc caagcaagtc actacttttt tataaagcat      4140
     ttattagaac tagatatgaa tacgcctgct cctctttttc aaacatatca aaatcagtac      4200
     aaaacaacat aaataagcat gctaatttcc accttagaaa ggccttagga cttattaaat      4260
     cgactccaat taatattatt tataatcttg cagctgaact tcctccagct tataggatta      4320
     aattcgctac agcgaaggag ttggccaaaa cgttcgctca tggactacca tctgcgtcgc      4380
     ttctgtcaaa ctcctttgta gccaaaaata ctagttacag tagaatttat gctgaattta      4440
     aaaatatcct ggatagtatt gctcctattt gtccttattc tctgtccaca cgaaagattt      4500
     cagttgacac aaatttcttt aaaggtactt gtamgaataa aaaaatggca aacgagacta      4560
     taattctctc tttatttaaa gaaaaaataa gaggtttaac ctcaaaaaat atggaaatca      4620
     tcttcacgga tggttctgtg tcggaaaatt ttacaggcag tgcctttgtt cacttaaatt      4680
     ccaattcgat aaaaagtttc tacaccgaca aaaaactgtc gtcgctgact gctgaactca      4740
     cagccctaga aaaagccatt gacttcggta tttcaaagaa gttctccaaa atagcaattt      4800
     taactgacag ccttggtgcc atccagacaa taaagaacgc gaactccaaa aactgcatct      4860
     ctcaatgcat cctgaaaaaa gtcataaaca atccaaccct gctatccata gagtttcacc      4920
     acattccaag ccattccaat atttgggaaa acgatctcgc agatacagcg gctaaaaatt      4980
     ctaggattaa cggctctttc gcacccgtca gatggaccct caaagacgct atcaatcata      5040
     tgttcgcgca aataaaacaa gactgggagc gtgaatacag tctgttttca ttagagcgta      5100
     acaagggtta ctctctcctc tcaccatata ccacttccaa gccttggttt aaaaacaaag      5160
     aagacctatt caaccgtata gaaacgaaga ctctgaacag aatcttaagc ggacatgctt      5220
     ttgataaata cacactttcc aaaatgaaag tttacgataa cgccctatgc gattcgtgca      5280
     acgttaatga agacatttcg catattttgt taaattgctc aaaatataca ccaacaagac      5340
     agaattatcc aacactactt aaatataacg atatctatcg tttacttgga aatgaaccaa      5400
     ttgaaaattg gacatcgatt accggtttca ttcgagctgc taatattaat atctaatata      5460
     acacactcca cactgctcat ttaatacact ataacaccat tcacgcttat accaactcac      5520
     aaaatcttaa aattaaaatt tctcacacac attgataaca ttttcatcgc ttatcgttca      5580
     tcgtcatcgc tcatcgttca tcgtcatcat aacatcacca gaaactactg cacgctattt      5640
     acatagctgt ccattaaatt ttgtttttct tgaaatttaa tttcatacat tggcagtggc      5700
     gttaacccgt tccaacgggg cggccaaata attcttccct cttcacggaa ggaagtaact      5760
     taatatttaa aaaaaaaaaa aaaa                                             5784
//
ID   Outcast-2_DTa repbase;    DNA;    INV; 5642 BP.
XX
AC   .
XX
DT   11-DEC-2012 (Rel. 19.10, Created)
DT   11-DEC-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5642
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2831-2831 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           185..1648
FT                 /product="Outcast-2_DTa_1p"
FT                 /translation="MAATGHPVSVKNKPPDLDPSNKKPVKRYLEKNSANLD
FT                 MTDDSYLAISASKDVLFAKKKKSELKFADSGIVTGVDNSKVNNSEGKKETI
FT                 VYGDNYNGNVAVLVSTKNCSLFENQKIKSGLFLFEKIRHLKISGLKEIVAL
FT                 ASSLYKIYFYNAKDANALVMNTDLRQMGIIAFIPKNYTESYGVIKGVPSSF
FT                 SNEEMIENINSDVKIKGVERLHRRVKTTDDENGSSFKLIPTETVKIAFEGC
FT                 DIPEKVSLFGVCALKVNNYIPMVRQCFSCGRLGHFSDRCKTTTRCIKCGVK
FT                 DCLGTCTILKCILCNGTNHSARDSHICPQWEKERDINKIMCIKKLARKEVL
FT                 TAYSVRQNYSQLVDYEKNFPALKNSENKIQNKDDKVNEVLKKHSYVSRMVA
FT                 RPTAPVQKPNFQLESYTNDSSDHVPFFPTITVEDKIHQIYNMLSQLSNQSS
FT                 EMSNLTQYTNNINSTSITKSNKLKERRTPVETEDRDIFFELNQ"
FT   CDS           join(1648..3762,3711..5180)
FT                 /product="Outcast-2_DTa_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="MNIKFLQHNIQSIKYNKNDLEFFLNNNKIDIAFLAEV
FT                 FSHDLSFRKLANYNLIEKHREDGYGGVGIAHKNDIKVKKFKYETDCDIIIG
FT                 NITRKSTNIKIASVYLEPHLSLDNFKIEINNLIEKLDPFYNTIIAGDFNAR
FT                 NTAFGDSVNNSKGSFLRERMLSAGYMIANDGSKTFKRNIDSEVGSVLDLTF
FT                 IKGMHCQKWNCKQFLLGGSHHFPIIFEVSGNLSAPKCFVAKNRLFKNLQNI
FT                 ELSGNIENLTKKITVEIKAATYKVDESRTPKMWWNDSLKVLFNEYVESQKK
FT                 ACTEPSYQNYVEAVNQKIKWKKAVKIAKRTNYLSKIDQLNAKANTKEAWRF
FT                 LRNLKNCQKEVVDNFDLDNSSSYLEFLKDQIPAENGAVDDELFALKENDNP
FT                 LFSLDDLEEVLGRNKRTAGGVDKITYQMLESLNTTAKQELVSFYNDKVSKC
FT                 DFPVEWRTIKITPIPKRNKDLSDIKNFRPISLISVLAKTINCMIKSRLEKH
FT                 IQDNASLPFRSYAYQKNKSAAMCINDVINFLASRKNDKKSIVMAVVDLNNA
FT                 YNCVNLNFLKMLLENEGFPKVFTDWIISFMSNRVLRLGDAVQVVQGGIPQG
FT                 SCLSPLLFNVYTKRLHQINDAKTQVFQFADDFAIISFGHDFDRTVENLQNK
FT                 IINFNLLCKDLGFSFNPGKSAILNVGKGVKKVVNIVVDNQIIPNQKRLPFW
FT                 ADFYVSNNSEPKKITFLGRLLCVNMSSVEHVKRVKKESIKSEKLLQFATTI
FT                 KSGLKPRTSANIFKTFVRSKQEYAITSLADMGKGASKDMEIAQARSLRRCV
FT                 GVPPDTSKHEIFVLAGVMPPVFRANILTAKELFKVKAQNPTLFDEFKCSQA
FT                 ITSYTTVIKKFQYFFDNTRMRQTFVYSNKICVKERLLYKSKSEYSVEEIRS
FT                 FYNEVINQYTDQKWNILSTDASVTHSVSGIGILELPSGMSHKVRIETSLSS
FT                 VGAELSGIKFAAEICKRNKYKKAVIFCDSLGATNLVKNKDCDSYIVQDIHE
FT                 CIEDSEVERLEVVWLPGHSGISINEKTDSLAKLAVTEGEIVEVKLSVREAL
FT                 REIRNIVHFEWNEDYKNKCRLKGSNLIHIFPDIPTKPWHHDLRWKAKSIKV
FT                 INRLMTENTYDKVFLHRIKAAETNLCDTCNVLEYAEHLIFDCQKHTRLRSK
FT                 FKIFRYYRNLRELLTRKEPLHLRELAIFINSANFNF"
XX
SQ   Sequence 5642 BP; 2001 A; 951 C; 1111 G; 1579 T; 0 other;
     cacttccttt tctgattcgg gcgagaccgg ttgtgattgt gaaagtaatt ttattttttc        60
     agcacaaagg cttaaaaaag aggaaaaaaa aaaataaaat aagtgtgtga tataaagttt       120
     tcttttctaa ttcccataca agacttggta agtttctggc caaggaacaa agttaagaag       180
     gatcatggcg gccactggtc atccagtgtc cgtcaagaat aaacctccgg atttggatcc       240
     aagcaataaa aagcctgtaa agagatactt ggagaaaaac tctgccaact tggacatgac       300
     cgacgacagt tatctagcaa tcagtgcctc aaaggatgtc ctttttgcca aaaaaaagaa       360
     aagcgaatta aaatttgctg actcagggat tgtgacagga gtagacaact caaaagttaa       420
     caatagtgaa ggcaaaaaag aaacaatagt ttatggtgac aattataatg gaaatgtcgc       480
     agttttggtg tcaaccaaaa attgttctct ttttgaaaat caaaaaatta agagtggact       540
     attccttttt gaaaagattc gacatctgaa aatatcgggc ttaaaagaaa ttgtggcgct       600
     ggcttccagc ttgtacaaaa tatactttta taacgccaag gatgcaaacg cactggtaat       660
     gaatactgac ctcagacaaa tgggcataat tgccttcatt cccaaaaact acacggaatc       720
     ctatggcgtt ataaaaggtg taccctccag cttttctaat gaagaaatga tagaaaatat       780
     taattctgac gtaaaaatca agggtgttga gaggcttcat aggcgagtca aaaccacaga       840
     cgatgaaaac ggttcctctt ttaagctgat accaacagaa acggtcaaaa ttgcttttga       900
     agggtgtgac attccagaga aagtttcgct atttggtgtt tgtgcactga aagtaaacaa       960
     ttatattcca atggtgaggc aatgttttag ttgtggaaga ttgggtcact ttagtgacag      1020
     atgcaaaacc accacacgat gcataaagtg tggggtaaag gattgcttgg gaacatgtac      1080
     cattcttaaa tgtattttat gcaatggaac gaatcactcg gccagagata gccacatttg      1140
     ccctcagtgg gaaaaagaga gggatattaa caaaataatg tgcattaaaa aattggctcg      1200
     aaaagaggtg ctgacagctt attcagtaag gcaaaattac tcacagcttg ttgactacga      1260
     gaaaaacttt cctgctttaa aaaacagtga aaacaaaatt caaaacaagg atgataaagt      1320
     caatgaagtt ttaaagaaac actcgtatgt cagtcgcatg gtagcacgac ccactgcacc      1380
     tgtacagaaa ccgaatttcc aattagagtc gtacactaac gattccagtg atcacgttcc      1440
     gttctttccc acgataacag tggaagataa aattcatcaa atctataaca tgttgtctca      1500
     attgagcaac cagagttcgg aaatgtcaaa tttaacacag tatactaaca acataaatag      1560
     tacaagtata acaaaatcaa acaaactaaa agaaagaaga acaccagttg aaacagaaga      1620
     cagagacatt ttttttgaat taaatcaatg aacataaaat ttttgcaaca taacattcag      1680
     tcaattaaat acaataagaa tgatctggaa ttctttctta acaataacaa aatagacata      1740
     gcatttttgg ctgaagtatt ttcacatgac ctttcattta ggaagctagc taattataat      1800
     cttattgaaa aacatagaga ggatggatat ggtggtgtag gtattgcaca caaaaatgac      1860
     attaaagtta aaaaattcaa atacgaaacg gactgtgata ttataatagg gaatattacc      1920
     agaaagagca ctaacattaa gattgcttcg gtttatttag aaccgcattt atctttagat      1980
     aattttaaaa tcgaaattaa caatctaatt gaaaaacttg atccttttta caatacaatc      2040
     attgctggtg attttaatgc aagaaatact gcctttgggg atagtgttaa taatagtaag      2100
     ggatcctttt tacgagaaag gatgttaagt gctgggtaca tgatagctaa tgatggtagc      2160
     aagaccttca aacgaaatat tgattcggaa gttggatctg ttctagactt aacttttatt      2220
     aaaggcatgc attgtcaaaa atggaactgc aaacagtttt tgttgggagg cagtcaccat      2280
     tttcctatta tttttgaggt ttcaggtaat ctaagtgcgc caaaatgctt tgtagcaaaa      2340
     aacaggctat ttaaaaatct acaaaatata gaattaagtg gtaacattga gaacctaacc      2400
     aaaaagataa cagtcgagat taaagcagct acatataaag ttgatgaaag taggacgccc      2460
     aagatgtggt ggaatgacag tcttaaagtt ttgttcaatg aatatgtcga aagtcagaaa      2520
     aaagcttgta cagaaccatc gtaccagaat tatgttgagg cggtaaatca aaagatcaag      2580
     tggaaaaagg cagtaaaaat tgctaagaga acgaactact taagtaagat agatcaattg      2640
     aatgccaagg ccaacacaaa agaggcgtgg agatttctaa gaaatctgaa aaactgtcag      2700
     aaagaagtag tggacaattt tgacttagac aactcaagct cgtaccttga attccttaag      2760
     gatcagattc cagctgaaaa tggagctgtg gatgatgaat tgtttgcctt aaaagagaac      2820
     gataatccgt tgtttagctt ggatgattta gaagaagttc taggtcgcaa caagagaact      2880
     gccgggggtg ttgataaaat tacatatcaa atgctagaat cgttgaatac aactgcaaaa      2940
     caggaactag tctctttcta caatgataaa gtgtctaaat gtgattttcc ggttgaatgg      3000
     aggaccatca aaataactcc catcccgaag cgaaacaaag acttaagcga catcaaaaac      3060
     ttcaggccta tatcattaat ttctgtgcta gcaaaaacaa taaattgcat gataaaatcg      3120
     agacttgaaa aacatatcca agacaatgct agtcttcctt tcagatcata tgcatatcaa      3180
     aagaacaagt cagcagcaat gtgcatcaac gatgtaatca attttctagc ttcgcggaaa      3240
     aatgataaaa aatcaattgt aatggctgtt gttgatttaa acaatgccta taattgtgtt      3300
     aatctgaact ttttgaagat gcttctggaa aatgaaggtt ttcctaaggt cttcactgat      3360
     tggataatta gttttatgtc aaacagggtg ttaaggctgg gtgatgcggt acaagttgtt      3420
     caaggaggaa ttccgcaagg atcctgcttg tcaccactac tctttaatgt gtatacaaag      3480
     cgattacatc aaatcaatga tgccaagaca caggtgtttc aatttgcaga cgacttcgca      3540
     attatctcct ttggtcacga ctttgacaga acagttgaaa atctgcaaaa taagattatc      3600
     aatttcaatc ttctatgcaa agatcttggg ttttccttca accccggaaa atctgcgata      3660
     ctcaatgtgg gcaaaggtgt caaaaaggta gtaaatattg ttgttgataa tcaaataatt      3720
     ccgaaccaaa aaagattacc tttttgggca gacttctatg tgtaaatatg tcctcagtcg      3780
     aacatgttaa aagggtaaaa aaagaatcaa taaaaagtga gaaattattg cagtttgcaa      3840
     caacgattaa atctggcctg aaacctagga ctagcgcaaa tatcttcaaa acgtttgtaa      3900
     gatctaagca agaatatgcc ataaccagcc ttgctgacat gggcaaaggt gccagtaagg      3960
     acatggaaat tgcgcaagct aggtccttaa ggagatgtgt gggagttcct cccgatacta      4020
     gtaaacatga aattttcgtt ctggctggtg taatgccacc tgttttccgg gccaatatcc      4080
     tcactgccaa agagttgttc aaagttaaag ctcaaaatcc cactctcttt gatgagttca      4140
     aatgttctca agcaataact agctatacaa ctgttatcaa aaagtttcaa tacttctttg      4200
     ataatactag gatgcgtcaa acctttgtct attctaataa aatatgtgtg aaagaaagat      4260
     tactttacaa aagtaaatct gagtattcgg tagaggagat acgttccttc tataatgagg      4320
     tgataaacca atacactgac cagaagtgga acattctgtc aacagatgct tcagttacac      4380
     actcagtaag cggaattggc atattggaat taccaagtgg tatgtctcat aaggtgagga      4440
     ttgaaacctc actatcgtca gtgggggctg aattatccgg cattaaattt gctgctgaaa      4500
     tttgcaaaag aaataagtac aaaaaggctg tgattttttg cgatagttta ggtgctacaa      4560
     atcttgtaaa gaacaaagac tgtgattcgt acattgtaca agatatacat gaatgtattg      4620
     aagactcgga ggttgaaaga ttagaggtag tatggttgcc tgggcacagt ggtatcagta      4680
     taaatgaaaa gacggacagt ttagctaagc tagctgtgac tgaaggggag atcgttgagg      4740
     taaagttgag tgtcagagag gccctaaggg aaattagaaa cattgtacac tttgaatgga      4800
     atgaggatta caaaaacaaa tgtcgactca agggatccaa tctgatacac atctttccgg      4860
     acattccaac taaaccatgg caccatgatc taaggtggaa agctaaaagt ataaaagtaa      4920
     taaatagact gatgactgag aacacatacg acaaagtttt tcttcaccgg attaaggctg      4980
     ctgaaacaaa tttatgtgat acctgcaatg tcttggagta tgccgagcat ttaatttttg      5040
     actgccagaa acataccagg ttgagatcaa agttcaaaat tttcagatac tatcgaaatc      5100
     tgagagaatt actaacaaga aaagagcctc tccatcttag agaactggcc atctttatta      5160
     acagcgctaa ttttaatttt taatccacct ctttaatcaa atttgtttta aattctacta      5220
     actactaaca taactggctt tacgaccagt atccaatctg ccgaaccctt tcataggaag      5280
     tttttgagga ccaccttctg tggtctaggg gttgtgggtc aatcatacat ccactcccat      5340
     ctcaatcact ttgttgataa gaggcaagga aagcaacagc ttatcctgtt tggaatgaag      5400
     tcgatcttaa tttgacgttc tctacatcta catctacctt ttggattgag aaaaagattg      5460
     tttacaagag gaaagctatg ctacagcttt tcttacccag gagcagaacc gatttttgtg      5520
     tttcaccgat gtgtgcattg tctcgcacat gcgctcaaac cactagcatc tggtctatgc      5580
     ggcagtgttg ttgcgaccaa caagctgttc atccacgcga tgaattaata caaaaaaaaa      5640
     aa                                                                     5642
//
ID   Outcast-3_DTa repbase;    DNA;    INV; 5213 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.10, Created)
DT   24-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5213
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5923-5923 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           303..1517
FT                 /product="Outcast-3_DTa_1p"
FT                 /translation="MQVKPNQKTVSEKNFNNNTQNKYDCEDKGPFIVCIDK
FT                 LSDSAERKAINQFQLSACLSKLNFGGIEEVAKVGYGRCKVKCSSADRANEL
FT                 ANNANLAEEGYIALIFKHFISKAGIIFNIPMHLSIEEITHNIKSDIPIVDI
FT                 NRVMRKDKNNKKELVPTGRVIINFKGQLLPKEIKFLYAKVEVQPYIYFTQC
FT                 YRCFRFGHTAKHCKGKNKCFKCGLEHGVEVICSKIECANCKQGHVATSHTC
FT                 PARKKAYAIQKTKVLENLTIQEVRKKYPSLFSREAPVLEDHRSFPSPCWES
FT                 QQANSTLNSSAESAKSIHSINSYANIAKGNKRQGNSSYNISQTHQNLAIDK
FT                 LNTLGKKISEFITISNNNSTTNESILHFLGEIRDFINQSNADIDAQQISNT
FT                 IESLSQPIPSQ"
FT   CDS           1517..5083
FT                 /product="Outcast-3_DTa_2p"
FT                 /translation="MKILQLNIQSLNNLNNKHLLSMHLINNNIDIAVLSEI
FT                 WVKDNSDCSIPEYHFFGKPREDGYGGVGVYIRCNIKFRILKSVDNIENLGI
FT                 QTLNLKKNINIFGLYIPPSTTVQNLKQGIRNLFNYAASLNNPTIIGGDFNS
FT                 KSITWGSTSSDQKGHTVERAALDAGFVCLNDGSPTFSVSPAQFSVLDLTFS
FT                 NTRDLDISWSSSRCKITNSNHFPIEIIINNISTNTNSYKILDNKVAIAFEG
FT                 VNFTSLETINNSLEAITKANTIKITERNKYEPKKWWCQEGEKLYRLRNAAR
FT                 QKFYLTKKFEDARKTLTAEKTLQDYIRNKRRSNFQAFVEEISESPSIWKSI
FT                 KNLKKYKQIKRTGNSWSEEEDEQFLQIIQDTPSTREVTSGPIRDPDTLQLY
FT                 TRNSFEIADFSEFLASRKPDSAKGLDKISYRMIQALSQAKKTELFNLLNSI
FT                 WLSGQIPECWREIKVVPIPKRNSDATKLANYRPICLLSVLFKVLEGLIKLQ
FT                 FDQHISANRLLPDRSYAFRKYRSTTLCINDLINKIQSLKAEGFQVVAACLD
FT                 LQKAFDCVDIGILENRLTSLGFNLHQITWVTDFLRKRILVKGGCRLELNRG
FT                 VSQGSCLSPTLFNLYTAELHSLNDQNCELFQYADDFFLVCFDPTFAGARDK
FT                 LLEKISEFEIECSDLNLSFNPTKSKVIHFNLRRQPLEVLHNGTPIRDVEQI
FT                 KYLGRIVAANNSPCAHIERAVSSANKTCAFLKLLSGCTFGINPSKGLLLHK
FT                 AFVRSKLEYACSSFSKLSKTATDKIKTHTNLNLRRVLGLIKCTPVPIIYHM
FT                 AAELPPEYRIRFQTAKELIKVFAHELPAKEILLSNSDLNTSYAKSYKDYKH
FT                 IIDQVKICDPEPIRTSKIRVDLDFFKGTAKTKSDIDLTSIMQIFKEKMVDL
FT                 RSRGFEIVFTDGSVTQNHSSAAFLIDSSKHLESCYTNKILSSLSAELLAID
FT                 KAVNHVISVGIPRVAILTDSRNSAIALQKASHNNFLTYNIKKKIANNEKLS
FT                 LVEIHHIPSHTGIPQNEIVDQAAKNAPSQGTFTALGWSIKDATAEIHRLIQ
FT                 DDWEKDYANFAAEKQRGYCELFPTTLNKPWFTNQGSKLKPNSIKIINRLLS
FT                 GNAFDNYTLHKMHVVNNNRCDSCDVFDNASHIIFSCSKYNTARHRFPSLEK
FT                 YQDVYQFLKHENIDAYQHIINFLEEIKVNL"
XX
SQ   Sequence 5213 BP; 1867 A; 1146 C; 971 G; 1229 T; 0 other;
     ccacgttcag ccgccagacg agaaggttgt acggtactac tgtcattgga agccattttt        60
     gccgccaaaa ccccgatcgt gtaaaatttc tcagaacttc tgggattccc ggaaacaaca       120
     gttttcgtgg aaagtccaaa aatgagttca aacggaaagg gaaagctgcc accgagtggt       180
     acgatcccga aaccaaaaac ttacgcagca tcaactatct cgacaagaag caaaggaata       240
     aaagaacaga aaataaagga ggagaagaag aaggaaacac ccaaacaacc aaccaacggt       300
     aaatgcaagt gaaaccgaat caaaagactg tgagtgaaaa gaatttcaat aataatacgc       360
     aaaataaata tgattgtgaa gataagggac ctttcattgt ctgcatagac aaattaagcg       420
     attcagccga aagaaaggct ataaaccaat tccagctatc tgcttgcctg agcaagctga       480
     attttggcgg gatagaggag gtcgccaagg ttggctatgg acgatgcaaa gtcaagtgca       540
     gctcggctga tagggcaaat gagttggcca ataacgccaa tttagctgag gaaggatata       600
     tcgccttaat ttttaaacac ttcattagta aagcaggcat catatttaac atccctatgc       660
     acctttcgat agaagaaata acacataaca taaaatcaga cattcccatt gtggatataa       720
     acagagtaat gagaaaagat aaaaataaca agaaggaact tgttccaaca ggaagagtaa       780
     taattaattt taaaggacaa ctactcccaa aagagattaa gtttttatat gctaaggtgg       840
     aagttcagcc gtacatttac tttacacaat gttaccgatg ttttaggttt ggtcacactg       900
     ccaagcactg caaaggtaaa aacaagtgct ttaaatgcgg gctagaacac ggagtagaag       960
     ttatatgttc caaaatagaa tgcgccaatt gcaaacaggg acacgtagct acctcccaca      1020
     catgtccggc cagaaaaaaa gcgtatgcta ttcaaaaaac aaaggtcttg gaaaacttaa      1080
     ccatccagga ggtgcgcaaa aagtatccat ctctattctc tagggaggct ccggtgttag      1140
     aggaccatag gtcctttccc tcaccgtgtt gggaaagcca acaagcaaat agtacactta      1200
     acagctcagc ggaatcagca aaatcgattc attccattaa ttcatatgcc aacatagcga      1260
     agggaaacaa aaggcagggt aatagctcat ataatatctc acaaacgcac cagaatctag      1320
     ccatagacaa attaaataca ctggggaaaa aaatctcaga attcattacc attagcaaca      1380
     ataattccac aacaaacgag tcaatattac actttctagg ggagattagg gactttataa      1440
     accaaagtaa cgcagatata gatgcacaac agatttcgaa caccattgaa tctctctctc      1500
     agccgatacc atcacaatga aaattctaca actaaacata caaagcttga ataacttaaa      1560
     caacaaacat ctcttaagca tgcatctcat aaacaacaat atcgacatag cggttctttc      1620
     tgaaatctgg gttaaggata acagcgactg cagcattcca gagtaccatt tttttggaaa      1680
     acccagggag gatggctatg gtggagttgg tgtttatata cgatgcaaca taaagtttag      1740
     aattctaaaa tctgtagata atatagaaaa tttaggaata cagacactaa atcttaagaa      1800
     aaatattaac atctttggtt tatatattcc cccctcaacc acagttcaaa atctgaaaca      1860
     gggcattaga aatctattta actacgctgc atctctaaat aacccgacca taatcggtgg      1920
     agactttaac tcgaagtcaa taacatgggg tagcacaagt agcgatcaaa agggccacac      1980
     agtcgaacga gctgctctag acgcaggctt tgtatgcctt aacgacggct ccccaacttt      2040
     ctcagtcagc cctgcacaat tctcagtcct cgacctcacg ttctctaaca cgagagatct      2100
     tgacatttca tggagttcct ccagatgcaa aattaccaac agcaaccatt ttccgataga      2160
     aattattatt aacaacataa gtacaaacac aaactcatac aaaatactag acaataaagt      2220
     ggctattgcc tttgaaggag ttaactttac cagcctagaa actattaaca attcattaga      2280
     agccattacc aaggcaaata caatcaaaat cactgaaaga aacaaatacg aaccgaaaaa      2340
     atggtggtgt caagaagggg aaaagttata tcggcttaga aatgctgcta ggcagaagtt      2400
     ttaccttacc aaaaaattcg aagacgcccg taaaacacta actgcagaaa agaccctcca      2460
     agactatatc cgaaacaaga gaaggtctaa cttccaagcc tttgtagagg aaatttcaga      2520
     aagtccatcc atctggaaaa gtatcaaaaa tttgaaaaaa tacaagcaga taaaacgaac      2580
     gggcaactca tggtcagaag aagaagatga gcaattcctg caaattatcc aagatacccc      2640
     gtccaccaga gaagttacaa gcggtcctat cagggatcca gatactttgc agctctatac      2700
     tcgaaattcc tttgaaatcg ccgacttttc agaatttttg gcctccagaa aaccagactc      2760
     tgcaaaagga ctggataaaa tttcatatcg aatgatacaa gcactatctc aggcaaagaa      2820
     aacggaattg ttcaatctct taaattctat atggctttcc ggccaaatcc cagaatgctg      2880
     gagagaaata aaagtagtgc caatcccaaa gagaaactca gacgcaacca aattagccaa      2940
     ttacagacct atatgtttat taagcgtcct attcaaggta ttagaggggc tcataaaact      3000
     tcaatttgac caacacattt cggcaaacag gctgctacct gatagatctt atgcttttcg      3060
     aaaatacagg tccacaacac tatgcataaa tgaccttata aacaaaatac aatctctaaa      3120
     ggctgagggc tttcaggtgg tagcagcgtg ccttgacctc caaaaggctt ttgactgcgt      3180
     ggatataggc atcctggaaa acagactcac aagtctcggc ttcaacctcc atcaaatcac      3240
     ttgggtaact gactttcttc gaaagcgaat tttggtgaag ggcggatgtc gtctggagct      3300
     caacaggggg gtctctcagg gtagttgcct tagcccaact cttttcaacc tgtacacggc      3360
     tgaactgcac tccctgaacg accaaaactg tgagctgttc cagtatgcgg atgatttctt      3420
     tctggtatgc tttgatccca ccttcgcagg agccagagat aaactgttag aaaagatctc      3480
     agaatttgaa attgaatgca gtgacttaaa tctatccttc aaccctacca aatccaaggt      3540
     aattcacttt aatttgcgta ggcaaccgct tgaagttctg cacaatggca caccaattag      3600
     ggacgtagaa cagattaaat atttaggaag aatcgtagcc gcaaataact caccttgcgc      3660
     ccatatcgag cgcgcggtct cttcagcaaa caaaacttgt gccttcttaa agttgctcag      3720
     tggttgcacc tttggaatta accctagtaa aggtcttctc ttacataaag cgtttgtgag      3780
     aagtaagctg gagtatgcat gctcgtcatt tagcaaattg tccaaaacag ccacagacaa      3840
     aattaaaacg cataccaacc ttaaccttag gcgtgtacta ggtctcatta aatgcactcc      3900
     agtccccatc atataccaca tggcggctga gcttccaccg gagtatagga ttcgatttca      3960
     aacagctaaa gagctgatca aggtatttgc acacgagtta cctgccaaag aaatcctact      4020
     ctccaatagc gatctgaaca ccagctacgc aaagtcgtac aaggactata aacacataat      4080
     agaccaggtc aaaatctgtg atccggagcc aatccgcact agcaaaataa gggtagattt      4140
     agacttcttt aagggaacag ccaaaactaa aagtgatata gacctaacaa gcattatgca      4200
     aatatttaag gaaaaaatgg tagaccttag aagcaggggc tttgagattg tcttcacaga      4260
     cggatccgtt actcaaaatc attcaagcgc agccttttta atagacagtt ccaaacattt      4320
     agaaagttgt tacacaaaca agattctgtc ctctctgtca gccgaactgc tagcgataga      4380
     caaagcggtc aaccatgtca tctcggtggg catacctcga gtagccatcc taaccgacag      4440
     caggaatagc gcgatagcat tacaaaaggc cagtcataac aactttttaa cctacaatat      4500
     taaaaagaaa attgccaata atgagaaact gagtctagta gaaattcacc acatacccag      4560
     tcacaccgga attccgcaaa atgaaatcgt ggaccaggcc gccaagaatg ccccctccca      4620
     aggaactttc acagcactag gatggagtat aaaagatgcc actgccgaaa ttcaccggct      4680
     aatacaggac gactgggaga aggactacgc caactttgct gcggaaaaac agcggggtta      4740
     ctgcgaactc ttccctacaa cactaaacaa accatggttc accaaccaag gctccaagct      4800
     aaaaccaaac agtattaaaa taattaatag attacttagc ggcaacgcat ttgacaatta      4860
     tacgcttcac aaaatgcacg tagtaaataa caacagatgt gacagttgcg atgttttcga      4920
     caacgcttca cacatcattt tcagctgttc caaatacaac actgccagac atcgctttcc      4980
     atccctggaa aaataccaag acgtatacca gttcctaaaa cacgaaaata tagacgctta      5040
     ccaacacata attaattttc tggaagaaat taaagtaaac ttataactaa caggccttaa      5100
     accaaatttc ttaaaccata caacttggca atttccacgt ttacgagggt ggccaaataa      5160
     tcccacggca ttcaagggtg tcgtggaaac ttaaaccaca aaaaaaaaaa aaa             5213
//
ID   Outcast-4_DTa repbase;    DNA;    INV; 5782 BP.
XX
AC   .
XX
DT   24-AUG-2021 (Rel. 26.11, Created)
DT   24-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5782
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (24-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   at least 97% identical to other recent copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..1792
FT                 /product="Outcast-4_DTa_1p"
FT                 /translation="MADAGKTVSAKIKPPDLNIYSKKIVKRNLDQQPSSSF
FT                 LKGCASEKISAKKMCRGKTEYAGVSANQMDTSEDQIKNMAAKSGSEESGNI
FT                 KSKNGAAADCSQNTQDVTKKNYSTLSSSNTLTNSDFNTTKVEEKRLSCLYG
FT                 SNHVGVAAVLVSTKECQLFENKRIKSGLFLYEKIRHMQLNGFKEIIPLAAS
FT                 LYKIYFHNARDANSLVLNAELKKMKINAFIPRNFVESLGVIRGIPTNFSEQ
FT                 EIFENLNSAVKVIRVERMMRRQESTNGAEGMKYNLIPTETVKVSFDGADLP
FT                 EKVVLFEICSLKVDHYIPKVRQCFKCGRLGHTAFTCKSLERCRKCGEKECS
FT                 GTCSVLKCILCNAKNHSARDSQICPVWAKEQDINKIMTIKKIARKEVLSSY
FT                 SVSQNYALMENYDDNFPPLNKQGSQTQNKDLKVNAVLKKHSYVSRLVEKPI
FT                 VPVQKPNFHLEPYTNDTSDHVPFFPSLSTEDKIHHIIKLLSQISNTNEIID
FT                 LIKATQNINQNSVREGTQSVTNIDRIAGNETQ"
FT   CDS           1792..5325
FT                 /product="Outcast-4_DTa_2p"
FT                 /translation="MSIKILQYNIQSLKNNKNDLEFFLNNEKCDIAILSEV
FT                 FSHDLSYRNIINFNLIEKYRDDGYGGVAIAYKNSLKLKKFKYNSNCDIVIA
FT                 SASNKGLNMLITSVYFQPSISLNNFKDEVNNLIEKLDSFDKVIISGDFNAR
FT                 CSDFGDSVSNRKGVFLKRVMSSAGYRLENNNSSTFKRNIDSVSGSVLDLTF
FT                 TKGIQCTEWTCKSFFIGGSRHFPIVYKINAELNLPIKFLAKKRLFNKLEKI
FT                 KTCGSISNLTKNITSEIKAASYCFGANKTPKAWWNDELKQLFKDFSDSQSK
FT                 ACRDPSYENYVNAVNLKIKWKKSVKIAKKTSFLKKIIELNTQPNTKNAWRF
FT                 LKNLKNCQEEKLDRFDLDKSSAFLDFLIEQIPPENRAVDENLYSRKSNENP
FT                 EFVLEDLQEVLDQDKKTAGGADLITYKMIKSLSTEAKIELVALYNNMVANC
FT                 DFPQEWRIIKVTPIPKRNKDLSDVKNFRPISLISCLAKTINCMIKNRLEIF
FT                 IKEKKLLPYRSYAYQKGKSAAMCINDVINVIALRKKNRLNVVLAVVDLSNA
FT                 YNCVNLNFLKLIMENDGFPKVFTDWILSFLSNRVLKLGNAVQVANGGVPQG
FT                 SCLSPILFNIYTKRLHQINDENTQIMQFADDFMIISSGKAFNSAVENLQNK
FT                 LTDFNLLCKDLGFTFNPSKSVVINVGRGSKKVVNVAVENVAVPNLKNVCFL
FT                 GRIISGNMSHKEHVKKIKADTKSSSKILHYATTIKSGLKPKISVNLFKSFV
FT                 RSKQEYAITSIADMGSGVNKSLEIAQAGALRRCVGVPPGTSKHEIFVLAGV
FT                 MPPIFRAKFLTAKELFKVKTQNPSLFETIRSSLAETSYTSTIHEFQFFFEN
FT                 TRIRDQFHISNKIRINEKVISKSKNEYSVEELCAFYGEIIEKYMKNGWNII
FT                 STDASIGPATGGIGVLEMPSRATHKFKFDAPLSSVSAELAGIKIACEILNR
FT                 SKYKNVVIICDCLGAISLIKNKKSEAYMVQEIHRLIEDSEVEIVELVWVPG
FT                 HKGININEQTDSIAKIAVNEGEEIDISLNIKDALREIKKILQYKWNEEYKN
FT                 KCMIKGSNLLKVFPNIPKKPWHHFLKWNAKSIKVLNRLMVDSTYDKVFLHK
FT                 IKAVDTNLCDLCNVPEYAEHSIFNCQKLISIRRKFKIFKYYKDLNELLTKK
FT                 EPLHLRELAKFINTANLNF"
XX
SQ   Sequence 5782 BP; 2067 A; 1009 C; 1139 G; 1567 T; 0 other;
     cacttctatt tcggcagcaa gcacgaccgg ttgttttctg cttcgtttca gtgaaaaact        60
     ttttgagtat caaaggctct gtgaaaaagt gtgtgaaata aagtagaaaa ctgtttagaa       120
     gctttctttt tgtggaataa aaaaggaaaa ttacttccaa gtggtgttct ggtgagtttt       180
     tggcaggctg gtaaaaccag cgactaacat ggcggacgcc ggtaaaacgg tgtcggccaa       240
     aataaaaccc cctgatctta atatatacag caaaaaaatt gtgaagagaa accttgacca       300
     gcaaccatca tccagttttt tgaaaggatg tgcgtctgag aagattagtg caaaaaaaat       360
     gtgcaggggc aaaactgagt atgcaggtgt tagtgcgaat cagatggaca caagcgaaga       420
     ccaaattaaa aacatggccg ccaagtcagg aagcgaagag agtggaaaca taaagagtaa       480
     aaatggggct gcagctgact gtagtcaaaa tacccaggat gtcaccaaaa aaaactatag       540
     cacactttca agttccaata cattaaccaa tagtgatttc aatacaacaa aagttgagga       600
     aaagcgtcta tcttgtttat atggatcaaa tcatgttggt gttgctgcag ttttagtttc       660
     aaccaaggag tgtcagcttt ttgaaaataa aagaattaaa agtggacttt ttctgtatga       720
     aaaaattagg catatgcagt taaatggttt caaggaaatc atcccgctgg cagcttcttt       780
     atacaaaata tactttcata atgctcgaga tgccaactcc ctagtcctga atgccgagtt       840
     aaagaagatg aagataaatg cttttattcc acgaaacttt gtagagtctc taggagttat       900
     taggggtatt cccacaaatt tctcagagca agaaattttt gagaatttaa attctgcagt       960
     caaggttatc cgtgttgagc gcatgatgag gcgtcaggaa agcacaaatg gagctgaggg      1020
     tatgaagtat aacttgatac caactgagac cgttaaggtt agcttcgacg gagctgattt      1080
     accggagaaa gttgttctgt tcgaaatatg ctctttgaaa gtggaccact acataccgaa      1140
     agtgcgtcag tgttttaagt gtggtagact gggtcacact gcttttacat gcaagtcatt      1200
     agaacgttgt aggaaatgtg gtgagaagga atgtagtggt acctgctcgg tgctcaaatg      1260
     cattctgtgc aacgccaaaa accatagtgc cagggatagt caaatatgtc cggtgtgggc      1320
     gaaggagcag gacataaaca aaatcatgac aatcaagaag atagctagga aggaggtgtt      1380
     aagttcttac tcagtgtctc agaattatgc tctcatggaa aattatgacg ataactttcc      1440
     tcccctaaac aaacagggaa gtcagacaca gaacaaggac ctcaaggtaa atgcagtttt      1500
     aaaaaaacac agctatgtca gcagattggt ggaaaaacct atagttcctg ttcagaaacc      1560
     taactttcac ttggagccgt atacaaacga cacaagtgac catgttcctt tctttcctag      1620
     tttatctact gaggacaaaa ttcatcacat cattaagctg ctatcccaaa ttagcaacac      1680
     taatgaaatt atagatctga tcaaagctac gcaaaatatt aatcaaaaca gtgtaagaga      1740
     aggaacacaa tctgttacta atattgacag aattgccggt aacgaaacac aatgagtata      1800
     aaaattctac agtataacat acaatcccta aaaaacaata aaaatgatct cgaatttttt      1860
     ctaaataatg agaagtgtga tattgccatc ctatcggagg ttttctcgca cgacttatca      1920
     tatagaaaca taattaattt caacttgatt gaaaagtaca gagatgatgg ctacggagga      1980
     gtagcaatag cttacaaaaa tagccttaaa ttaaagaaat ttaaatacaa ctccaactgt      2040
     gacattgtca ttgcaagtgc ttctaacaaa gggttaaata tgcttataac atcggtgtat      2100
     tttcaaccca gcatttctct caacaacttc aaagatgaag taaataatct aatagaaaaa      2160
     cttgactctt ttgacaaagt tattatatct ggtgacttca atgcgagatg tagtgatttt      2220
     ggagacagtg taagtaatag gaagggtgtt tttttaaaaa gagtaatgtc aagtgctgga      2280
     tacagacttg aaaacaacaa cagttcaacg tttaaaagaa acattgactc agtctcggga      2340
     tcagtgctag atttgacatt caccaaaggt attcaatgca ccgaatggac atgtaaaagc      2400
     tttttcattg gtggtagccg acattttcca attgtctaca aaataaatgc tgagctgaac      2460
     ctacccatca agtttcttgc aaaaaaaaga ttattcaaca aattagaaaa gataaagaca      2520
     tgtggtagta tatcaaatct caccaaaaac ataacgagtg aaatcaaggc agcctcatat      2580
     tgttttggag caaacaaaac tccaaaggct tggtggaatg atgaactaaa acaactcttc      2640
     aaagattttt ctgatagtca gagcaaagca tgtcgtgatc cgtcgtatga aaactatgtt      2700
     aatgcagtaa atctcaaaat caaatggaag aaatcagtta aaatagcaaa gaaaactagt      2760
     tttttaaaaa agattattga attaaacacc caaccaaaca cgaaaaatgc gtggaggttt      2820
     ttaaaaaact taaaaaactg tcaggaagaa aagttagata ggtttgatct ggacaaatca      2880
     agtgcttttt tggatttctt aattgagcaa atacctcctg aaaatagagc tgtagatgag      2940
     aatctttatt ccagaaagag caacgaaaat ccggaatttg ttctggaaga tcttcaggaa      3000
     gttcttgatc aagataaaaa aactgcagga ggagcggatt taataacgta caaaatgatc      3060
     aagtctctta gtacagaagc caagattgag ttggtagcct tatacaacaa catggttgca      3120
     aactgtgatt ttccacagga atggagaatt atcaaagtta ctccgattcc caaaaggaac      3180
     aaagatttat cagacgtcaa aaatttcagg cccatatcgc ttatatcctg tcttgccaaa      3240
     acaattaact gcatgattaa aaacagatta gagattttca taaaagaaaa gaaattacta      3300
     ccatacaggt cttatgcata ccagaaagga aaatcagcgg cgatgtgcat aaatgatgtg      3360
     ataaatgtca ttgccttaag gaagaagaat aggttaaatg ttgtactagc agttgtcgac      3420
     ctatccaatg catataattg tgtaaatctg aatttcctaa agttgattat ggaaaacgat      3480
     ggattcccta aagtcttcac agactggatt cttagttttc tatctaatcg tgttttgaaa      3540
     ttgggaaatg cagtacaggt ggcaaatggt ggggttcctc aaggatcctg cttatctcca      3600
     atcttgttca acatatacac aaagagattg catcaaataa acgatgaaaa cactcagatt      3660
     atgcagtttg cggatgattt catgattatc tcgtcaggaa aagcatttaa tagtgcggtt      3720
     gaaaatttgc aaaacaagct cacagatttc aatctacttt gcaaggacct cggttttact      3780
     tttaacccga gcaagtcggt ggtaataaat gtcggtagag gaagcaaaaa agtagtgaac      3840
     gtagcagtgg aaaatgtggc tgtgccaaat ctcaaaaatg tttgttttct tggtagaatt      3900
     atatctggaa acatgtcgca taaagagcat gtcaaaaaga ttaaagccga taccaaatct      3960
     agttcaaaaa ttctgcacta tgcaactact atcaagtctg ggttgaaacc aaaaattagt      4020
     gtaaatcttt ttaaatcttt tgtaagaagc aagcaggaat acgccataac cagcattgct      4080
     gacatgggta gtggagtgaa caagagctta gagattgctc aggctggagc cttgagaaga      4140
     tgcgtaggtg tgcctccggg gacaagcaag catgaaattt ttgtgcttgc cggtgtaatg      4200
     ccaccgattt tcagagctaa attccttact gctaaagaat tgtttaaagt gaaaacacaa      4260
     aacccctcgc tctttgaaac cattaggtca tctttggctg aaacaagcta caccagcact      4320
     atacatgaat ttcagttctt ttttgaaaac actagaattc gagaccagtt tcatatatcc      4380
     aacaagatcc gaataaatga aaaggtgatt agcaagagca aaaatgaata ttcagttgag      4440
     gaactctgtg ccttttacgg ggaaataatt gagaaataca tgaaaaatgg gtggaacata      4500
     atctccacag atgcgtccat aggtcctgct acaggtggca ttggtgtact tgaaatgcct      4560
     agccgtgcga ctcacaaatt taaatttgat gcgcctctct cttcagtaag tgccgagctt      4620
     gctgggatca aaatagcatg tgagattttg aacagatcca agtacaaaaa tgtagttata      4680
     atttgtgatt gcctgggtgc cattagctta ataaaaaaca aaaagtctga ggcgtacatg      4740
     gtacaagaaa tacataggtt aattgaagat tcggaggtgg aaattgtaga gttagtttgg      4800
     gtacctggcc acaaaggcat taacataaac gaacagactg atagtattgc caaaatagct      4860
     gtaaacgaag gggaagaaat agacataagt ctcaatatta aagatgcctt aagagagatt      4920
     aaaaaaatcc tacagtacaa gtggaatgag gaatataaaa acaaatgcat gatcaaagga      4980
     tcaaatcttt taaaggtctt cccaaatatt cccaaaaaac cctggcacca tttcttaaaa      5040
     tggaatgcca aaagcattaa agtattaaac agacttatgg tagactcgac atatgacaag      5100
     gtatttcttc acaaaataaa agctgttgat actaacctat gtgacctgtg taatgttccg      5160
     gaatatgccg agcattcaat ttttaactgc caaaaactaa tcagcatccg tagaaaattc      5220
     aaaattttca agtattataa agatcttaac gaattactaa ccaaaaaaga accgcttcat      5280
     ttaagggagc tggcaaaatt tattaataca gctaatctaa acttttaagt ctacctctta      5340
     tttaaccatt tctaattgtg tagtttttta tggcgtttgg ccaataaaca ttcctgccaa      5400
     gctcactgcc aagaagtctt tataaaacca ccttctgtgg ttttaaatct gagccaatca      5460
     gagtgacgta tgagcacata tacgatcaca tcctggagct ccttgcaaac cacagcctgt      5520
     ggtcttgcta caataacgtc aattgaaatc tctggacaac ccacacatcg ctctgtcgca      5580
     cataacattc gagagaaaaa actctgaatt caaagacatc gaaaacagcc aacaaaacga      5640
     tgaacatcga tagcaattga gttgacgtgg gtgtatcgcg catgcacctt caaaccacga      5700
     gcccctggtc tatgcggcag tgttgttgcg accaaccatc tgatcatcca tgcgatgatt      5760
     taaaaccaaa aaaaaaaaaa aa                                               5782
//
ID   Outcast-5_DTa repbase;    DNA;    INV; 5529 BP.
XX
AC   .
XX
DT   25-AUG-2021 (Rel. 26.11, Created)
DT   25-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5529
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (25-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence, flanked by 12-bp TSD.
XX
SQ   Sequence 5529 BP; 1964 A; 925 C; 1072 G; 1568 T; 0 other;
     cacatccttt tcaactccaa gcgagaccgg ttgtgttttg caaattggac agtgaaaagt        60
     cttcttcttt tcttttcctt gctagcgaaa aggctaaaca aaaagtgatt gattactagt       120
     ttttgaagtg tgcgagaccg tttctccttt ttttttttga caaggacctt tccttaaata       180
     attattctgg tgagtagtta atttttggca ggctggtaaa accagcaagt aaaatggcgg       240
     aggccggtca gccggcagcc gcgaaattga aacctcctga tggagatcta aataacggta       300
     gagttagcaa aagaaattgt gataaggtaa agctatccag cttgaacaag gagggcctgc       360
     ttcataaata tacagaagtt gaactttcaa acaaaaaagt gcgaattgat agcttaaatt       420
     ttgtgcaagg tcatggtggg gaaaatatga ttgcaaagag cagcaaccct aaggactatg       480
     aaagtgactc tgaccaaaca atggcagccg gttctgacaa tgaaggacaa agaaaagaga       540
     aaatatgcac taatgaaact aacgatattt ccaaactaac aaataatact attgaaattg       600
     gtagtaaagg taaaaatcaa actgaacgtc gtaatttctt gtacaatacg tatcatattg       660
     gtgaagctgc ggtgcttgtc tcaaccaagg acagcagtct ttttgaaaat gtgagagcta       720
     aaagtggtct atttctttat gaaaaaataa ggcatatcaa aatttatgat tttagggaaa       780
     ttgttgctct atcgccgcac ctgtgtaaga tgtatttcaa aaacgcaaag ggggcaaatt       840
     cctttgtaaa aaatgaagaa ttgaaaaaga tgagcattgt agctttcatt ccaaggaatt       900
     ttgtcgaatc gtgggggata atcaaaggag tttcaactgg tttttctgat caggaaattt       960
     tggaaaatgt tttttcgccg attaagatta attttgttga acgtttggtc aggcgcgaga      1020
     aagctattaa tgacaatatg cagggtttca caaactagtt cctactgaaa cagtcaaaat      1080
     tggttttgat ggtgtagagt tgcctgaaaa aatctctctt tttggtgtct gttccctgaa      1140
     agtaagccac tacataccta agattcgcca atgttttaaa tgtggacgtc ttaatcaaac      1200
     ttccgataga tgcaagtctg taggacggtg tattaagtgt ggtgcacagg actgtcaggg      1260
     tgcctgttca accctaaagt gcattctgtg caatgcgaaa aatcattcag ccaaagatcg      1320
     gaaaatatgt tcagtttggg agaaagaaat ggacataatg aaaattatga ccattaaaaa      1380
     gattgcgaga aaagaggtat tgagtaaata cgccattcaa caaaactact caaggtttga      1440
     caattatgag gagaattttc cggctctcaa tcagaaagag gaagctgtgc aaaacaagga      1500
     tgcaaaagta aatggagtac tgaaaaagca cagttatgcc agtcgaatta tattaaaacc      1560
     aacgattcct gtacagcagc ctcattttca tttggattca tacaccaata atactagcga      1620
     tcatattccg acatatccaa ctttcaccga tgaagataga tattatcaat tcatcaacaa      1680
     gttagggtat aaagtaaatt tgaacgaaga atcaccaaca tcaacacaag tcgattttca      1740
     tacaaacaac tatgtaaaaa aaacaactaa agaaagaaga aaaccagttg acacagttga      1800
     aagaaactta tctataatat caataaaata atattcttga acaacgaaga tatacatgta      1860
     gccttcttag cagaagtctt ttctcatgac ctaagcttta ggaaaatagt aaatttcacg      1920
     ttactagaaa aacaccgaga cgatggttat ggaggagtgg caatcgcgga tgttaatgtc      1980
     aaaagattca tttatgaaac aaattgtgac attattgttg caaacttgtc caaaaaaagc      2040
     agtaacatca aaattgcatc ggtatatttt gagcctcaac tatcacttcc tatttttcaa      2100
     aatgaaatca ccaatctaat tgaaaaacta gatcctttcg acaaagtagt tattgcagga      2160
     gatttcaatg ccaggtctac atcctttggt gattatatcg acagtagcaa gggtgatttt      2220
     ttaatgcaaa caatgagtaa tgctggtttc ttgctattaa acaatggtag ccctaccttt      2280
     aggagaaata tagatgctgc tcaaggatcg gtactagatc taacttttgt taaagggatt      2340
     cagtgtagtg aatggttgtg tgaatctata tacttaggtg gtagtcatca tcatccaatt      2400
     acttttaaga ttgctgaaga ttttagatct ccaaaacaat ttttatccaa aaaaaggcta      2460
     gaaagaaatc ttaataaatt agtaaataat ggtagcattg aaactttaac aaaaaacata      2520
     aataaagaga ttaaagaagc aacatacata gttcaggaaa ataggactcc taagtactgg      2580
     tggactgaag atttaatgat tatttttaga atttttacaa gcaaacagaa aaccgcgtgt      2640
     tcatcgcctt cgtatgaaaa ctacgttgag gctatcaact ataagttgaa atggaaaaaa      2700
     gctgtaaaaa tagctaaaaa gactagttac cttaggaaaa ttacagaact aaatacaagt      2760
     cccaacacca gatcagcgtg gcgttttctc aaaaatctta aaaattgtca agaaaatcct      2820
     cctgagaaat ttgacttaga taaatcaaat caatatttgg tttttttttg aaaaaccaaa      2880
     tacctttgga gaatcaagtt gatagtccaa gtttctctat agatgagctt gagcaagttt      2940
     taagtaaacc taagaaaact gccggtggct tggacaaaat aacgtacagt atgctcaacg      3000
     cactaaacct cgaagccaaa aaagagctgg ttatgttcta taatgaccta gtggccaact      3060
     gtaattttcc aaaggaatgg agaagtatca aggttacacc tattccaaaa aaggacaagg      3120
     acttgacaaa tgttgaaaat ttcaggccaa tatctctcat ctctgtgttg gcgaaaacag      3180
     taaacagcct tgttaaaatg agactggaaa agtttactaa ggataacgaa gtgttacctt      3240
     atagatcgta cgcttatcaa aagggtaaat ctgcatcgat gtgcataaat gatgtgataa      3300
     atgcaatagc atcaaagaaa atgataaaac aatgcgtaat catggcggtt gtagacttat      3360
     caaatgccta caattgtgtc aatgtaaact ctttaaaagt gataatggaa agtgagaact      3420
     atccaagggt tttaatcgac tggtgcctca gtttcttgtc aaaaaggata ttgaaattag      3480
     gagaagccgt tcaaactgtc agtggtggca ttccgcaggg atcgtgcctg tcccctattc      3540
     ttttcaacat ttacacgaaa agattacatc aaatatgcaa tggccagacc caagtaatgc      3600
     aatttgcgga cgattttgta ataatctcct caggccagaa tttcaataga actgtagata      3660
     atctacaaag taaacttata gattttaatt tgctatgtca tgacttaggg ttctctttta      3720
     accctagcaa atctgctata gttaatatag gcaaaggacg cacacgagta gttgaagtga      3780
     ctattgaaaa tgttccaatt ccaaatcgaa agaaaatact ttttttgggg agagttctat      3840
     ccgctaatat gtcgcttact gatcatgtaa agaaggtaaa agatgacacc aaaaagagta      3900
     aaagaattat ccagtatgca acaaccatca aatcaggtct taagccgaga ataagcacta      3960
     atcttttcga gtcttgcgaa tatgggtatt ggggcaagca ggaacttaga aattgctcag      4020
     gcaagtgtgc taagaagatg tgttggggtt ccaccaggaa ctagtaaaca tgaaatcttt      4080
     gttcttgcgg gtgtcatgcc cccagttttt cgtgcaaagt tccttacggc gaaggagctt      4140
     tttaaggtaa aatctatgaa cccatccctt ttcaatgaac aaaggttccc tggctgatac      4200
     aagctacacg agtaccatta gggatttcag tttctttttt gagaacacta aaattcgaac      4260
     ttatttctat ttctcaagga aagttaatgt aaaagagaaa atactagaga aaaacaagga      4320
     agaatactct agggaggaag tgaaggccat atacagtgaa ataataactg gatatttgga      4380
     caggggttgg aatgttctat gcactgcttc tttaagtcct gttgctagcg gaattggcat      4440
     tgttgagatg cctagtggaa ttacgcacaa ttacaaagta gagtcgtccc tatcctcggt      4500
     gagtgctgag cttgctggta taaaactagc cagtgagatt tgtcgtagga agaattatat      4560
     acaggctgca attctctgcg attgtttggg tgctgtcaat ttagtcaaaa acaagggaac      4620
     tgaatcttat atggtacaag aaatacacga cacagtagag aaatcggttt tacaagattt      4680
     tactgttata tggattccag gacacaaagg aattgaaata aatgaaaaga ctgatgctgc      4740
     agcaaagttg gctgtcagtg agggtattac tgttgacatt aaatttagct ctaaagatgc      4800
     cttacgggaa atcaaaaaga tattacatca aaattggaac gaggattaca aaagcaaatg      4860
     tacaaacaaa gggtctaacc ttattaaagt atttcctgaa attcccgtaa agccatggca      4920
     tttcaacctc aagtggaaag ccaaaagtat taaagtccta aatagattaa tggtagatca      4980
     tacgtatggt aaagtgttct taaatagaat aaaagttact aactcaaatc tctgtgatac      5040
     ctgccaaaaa ctaactaaca tcagaactaa atttaaaatt tttaactact ataataacct      5100
     aactagttta ctagaaaaaa aagaaccact ccatctcaga gagttggcca tatttataaa      5160
     cactgcaaat tttaattttt gaaatctacc actttataat taattagaaa cactggccta      5220
     ttggcctgat aaccacctgt caaactcagc tcaaggaagt ttttgcagac caccttctgt      5280
     ggtcttgtat caaccaccta cacatctgat gaaatcgcga ctttgagagc aacattctgg      5340
     aggaatactt ttgagcatca ctgacattcg aacattgaga acgtctacga ttaatatcga      5400
     taacagcgaa gtcgacgtgg gtgtatcgcg catacacctt caaaccacca ttatctggtc      5460
     tatgcggcag tgttgttgcg accaacagct ctattatcca tgagatgatt taaaacacaa      5520
     aaaaaaaaa                                                              5529
//
ID   Outcast-6_DTa repbase;    DNA;    INV; 5891 BP.
XX
AC   .
XX
DT   25-AUG-2021 (Rel. 26.11, Created)
DT   26-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5891
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (26-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           268..1914
FT                 /product="Outcast-6_DTa_1p"
FT                 /translation="MADTGNSVSANARPPDRTIKNNKRPFGFNNLNKDELL
FT                 LIMKKSENRIKKPRKGDIKPMQGNGKAEHMDTREQETDATHTDTTIMAGNA
FT                 GDENSAKETSENVTVSDGCQNNINTTLETTNCPVDPKTSANKEYLINKGHS
FT                 NEISVQKKVERPKCFYGEHHVGEAAVLVSTKDCALFENTRAKSGLFLFEKI
FT                 RHLKIDGFKEIVSLSPKLYKVYFNKSKGANEFVNNEELKKMNIVAFIPRNF
FT                 VESLGIIKGIPTGFSDSEILENIDSPIKINLIERLLRRDRSTNLDRATTLK
FT                 LMPTETVKISFDGANIPEKVSLFGVCSLKVSHYIPKVRQCYNCGRLGHTSE
FT                 RCRSTGRCNKCGVQDCKGTCSILKCILCNAKDHSARDRRNCPVWEKEMDIT
FT                 KIMTIKKIARKEVLSSFSVQQNYSQLENYDTNFPALNKKDENIQNKDLKVN
FT                 EVLKKHSYASRLIQRPVAPYQKPHFQLEPYTNDSSDHVPVFPNITTNDKIY
FT                 QIIKLLSQIGNINSEMSISTQDSDYTTQSTKKNFMERRKPVDTIERQSLEK
FT                 LK"
FT   CDS           join(1914..2318,2288..2578,2586..3050,3054..3245,
FT                 3249..3728,3732..5396)
FT                 /product="Outcast-6_DTa_2p"
FT                 /translation="MTLKILQHNIQSIKNNKNDLEFFLNDQNISVALLQEV
FT                 FSHDLSFRKIANFKLLEKHREDGYGGVAVAFKNDLNVKRFCHDTTRDIIIV
FT                 NISKQNLNIKLASLYLEPQITLSVFKDEINNLIEKLDSFQNVTFLIEFLSK
FT                 CHLFDRVNSSKGSFLAQAMLNAGYKLENTRGPTFRRNIDSEEGSVLDLTFV
FT                 KGIKIAEWKCDTFFLGGSHHHPITFTVNENLSRSNLFLAKKGKLRKIEISG
FT                 NLENLTKNMKDKIKANKVPKYWWNDDLSNLFNEFRKSQTKACTSPTYHNYV
FT                 EAVNCKSKWKKAVKIAKKTSFLRKINELNTKPNTTPAWRLLKSLKNCQEES
FT                 PGKFDPENSSEFLEFLRNQIPTESMAIDKSLVATKNNENPCFRLDLEMVLS
FT                 QNKKTAGGIDRITYEMLNSLSYTAKNELVSIYNSKVARCDFPSEWRQIKIV
FT                 PTPKKNDLTNLQNFRPISLISVLAKTVNAMIKSRLQKFIIDHEILPYRSYA
FT                 YQKGKSAAMCINDVINVIAEKKKLRKNVMVSVVDLSNAYNCVNLNSLKIIM
FT                 ESESFPKMYTDWILSCMASRELKLGKAVQVVSGGIPQGSCLSPVLFNVYTK
FT                 RLHQISDRKTHVMFADDYVIISSGHDFNTTVNNLQTKLNDFNLLCKDLGFA
FT                 FNPAKSTVVNIGKGNTKEANIIIENVAMPNQKKVNFLGRILSANMSCTDQI
FT                 KKIKTETKVSGKILRFATTIKSGLKTKVSTNIFKSFVRSKQEYAITSLAEM
FT                 GNGASKNFEIAQAKALRRCVGVPPGKHEIFVLAGVMPPVFRAKWLTAKKLF
FT                 KVKAMNPSLFSQLKNSPAETSYTSTIRDFRFFFDNTRTRDFFLVSNKINIQ
FT                 DKLLAKSKVDYSTEEANAIYSEEINRYLDKGWSIISTDASINTEAIGTGIM
FT                 ELPSHKAHKFKINASLSSVGAELAGIKMACTICQSNKYKHAVIFCDSLGAI
FT                 SLVKNKKSDSYLVHEIHNIIEKSDVQKLDVIWIPGHKGIPLNEKTDRLAKL
FT                 AVREGGVVDIKLSTKEALREIKKKIEEQWNEDYKIKCTNKGTNLINVFPKI
FT                 PKKPWHHDLKLKAKGFKVLNRLMTGHTYDKTFLHRIKAIDSNLCEICNVPE
FT                 YAEHLIFDCPKFTTLRKKFKIFKYYSNLNHFFQVKEPLQSKFLVLLLLITV
FT                 VYNFPVV"
XX
SQ   Sequence 5891 BP; 2258 A; 1105 C; 1095 G; 1433 T; 0 other;
     attatgagaa ttgctcactt ccttttcatt tgcgagcgag accggttgcg tttttacatc        60
     gtatattgaa aagtttggtt ttttattttt tgtgaaagct ttaaaggcta aaaaaagtga       120
     ttaacaaaag taaacagtgt ttttaaacgc ttaaggccaa gagtctttgg atttctcggc       180
     aggttgctac aaagtgggat atttcccctt ttttttttct ggtgagtggt aaattttggc       240
     ggcaggctgg taaaaccagc aaaaagtatg gcggataccg gtaactcggt gtctgccaat       300
     gcaagacccc ccgacagaac tatcaaaaac aacaagagac ctttcggttt caacaattta       360
     aacaaagatg agcttttatt aattatgaaa aagtcagaaa atcgtattaa aaaaccacgc       420
     aagggtgaca taaaacccat gcagggcaac ggtaaagcag aacacatgga cacaagagaa       480
     caagaaacgg acgccacgca tacagacacg acaattatgg cgggtaatgc aggtgacgaa       540
     aacagtgcaa aagaaacaag tgaaaatgtg accgtctcag atggttgcca aaacaacatc       600
     aatactacct tagaaactac caactgccca gtggacccaa aaactagtgc aaacaaagaa       660
     tacttgataa ataaaggtca ttcaaatgaa atttcagtgc aaaaaaaagt tgaacgtccc       720
     aaatgttttt atggagaaca tcatgtgggg gaagcagcgg tgcttgtgtc cacaaaggac       780
     tgtgctcttt ttgaaaatac aagagccaaa agtggcttgt tcctctttga aaaaattaga       840
     cacctaaaga ttgatggttt caaagaaata gtttcacttt ctccaaaatt atacaaagtt       900
     tattttaaca aatccaaggg tgcaaacgag tttgtgaaca atgaggaact aaagaagatg       960
     aacatagttg cgtttatacc aagaaatttt gtcgagtcat taggaatcat taagggtatt      1020
     cccactggtt tttctgacag tgaaattctg gagaatatag actctcccat taaaataaac      1080
     cttattgaac gacttcttag gcgcgataga tccacaaacc tagatagagc tacaaccctg      1140
     aagctaatgc cgacggaaac tgtaaaaata agttttgatg gagcaaacat acctgaaaag      1200
     gtttcacttt ttggcgtttg ctcattaaaa gtcagccact acattcccaa agtgcgccag      1260
     tgctacaatt gtgggcgact gggacacact tcggaaagat gcaggtcgac aggacgctgc      1320
     aacaagtgtg gggtccaaga ttgtaaggga acgtgctcaa ttttgaaatg tattttatgc      1380
     aacgccaaag accattctgc tagggataga cgaaattgtc cagtctggga gaaggaaatg      1440
     gatatcacta agatcatgac aattaaaaaa atagccagaa aagaggtttt gagttctttt      1500
     tctgtacaac aaaactattc ccagttggaa aattacgaca caaatttccc agccttaaac      1560
     aagaaagacg aaaacattca aaacaaagat ttaaaagtca acgaggtctt aaaaaaacac      1620
     agttatgcca gccgattaat acaacgacct gtagctccct atcagaagcc ccattttcag      1680
     ttagaaccct acacaaacga ttcaagcgat catgtaccag tgttccccaa cataactacc      1740
     aatgacaaaa tctatcaaat cattaagttg ttgtctcaaa tcggcaacat aaattcggag      1800
     atgtcaatct ccacacagga cagcgactat acaacacaaa gcacaaaaaa aaactttatg      1860
     gaaaggagaa agccggtaga cacaatagaa agacaatcac ttgaaaagtt gaaatgactt      1920
     taaagattct acagcacaat atacaatcaa tcaaaaacaa caaaaacgat ttagaattct      1980
     ttctaaatga ccaaaacatt agtgtagcct tattacaaga agttttttca cacgatttat      2040
     cttttagaaa aatagctaac tttaaacttt tagaaaaaca cagagaagat ggctacggag      2100
     gggtagccgt agcttttaaa aatgacctaa acgtaaaaag attctgtcat gacacaaccc      2160
     gtgacattat cattgtaaac atttcaaaac aaaatctaaa cattaaacta gcctcattat      2220
     atttagaacc acagataact ttatccgtat ttaaagatga gattaacaat ctgatagaaa      2280
     aacttgattc ctttcaaaat gtcacctttt tgatcgagta aacagcagca aaggctcttt      2340
     tctggcgcag gcaatgctaa acgccggata taagctggaa aacaccaggg gtcccacgtt      2400
     taggagaaac attgactcgg aagaggggtc agtccttgat ctaacctttg taaagggaat      2460
     taaaatagcc gaatggaaat gtgacacctt ttttctgggg ggaagtcacc atcacccaat      2520
     cacattcaca gtaaacgaaa atcttagcag atcaaacctc tttttagcca aaaaaggcta      2580
     ggtaaaaact taggaaaata gaaattagtg gcaacctaga aaaccttaca aaaaacatga      2640
     aagataaaat caaggcaaac aaagttccca agtattggtg gaatgatgac ttaagcaact      2700
     tattcaacga gtttcgcaaa agtcaaacaa aagcatgcac ctctccgaca tatcacaact      2760
     atgtggaggc ggtaaactgc aaaagcaagt ggaaaaaggc cgtgaaaatt gcgaaaaaaa      2820
     caagttttct gagaaaaata aacgagctca acacaaaacc caacacaaca ccagcgtggc      2880
     gtctcctaaa gagcctaaaa aactgtcaag aggaaagccc tggcaaattt gatccagaaa      2940
     actccagtga attcttggaa tttttaagga atcagattcc aacagaaagt atggcaatag      3000
     ataaaagtct agttgccacg aagaacaatg aaaacccttg ttttaggttg taggatctag      3060
     aaatggttct tagccaaaac aaaaaaacag ctggtggaat tgacaggata acatatgaaa      3120
     tgttaaattc cttgagctat actgccaaaa atgagctagt gtctatctac aactccaagg      3180
     tagcaaggtg tgattttccg tcagaatgga ggcaaatcaa aattgtcccc actcctaaga      3240
     aaaactagga cctgaccaat ttgcaaaact tcagacccat ctctcttatc tcagtgctgg      3300
     ccaaaacggt aaatgcaatg atcaaaagca gactacaaaa atttattata gaccacgaaa      3360
     tactaccata cagatcatac gcataccaga agggcaagtc tgcagcaatg tgtataaacg      3420
     acgtcataaa cgttatagcc gaaaaaaaaa aattacgtaa gaatgtaatg gtatcggtag      3480
     tggatctatc gaatgcgtac aactgtgtca atctgaactc gttaaagatc atcatggaaa      3540
     gtgaatcctt tccaaaaatg tacacagact ggattctaag ctgtatggct agcagggaat      3600
     taaaacttgg gaaggcagtt caggtggtga gtggtggtat acctcaagga tcctgcctat      3660
     cacctgttct ttttaatgtt tacaccaaaa ggcttcatca gatcagtgat aggaaaacgc      3720
     acgtaatgta atttgcagat gactatgtca tcatctcttc tgggcatgat ttcaatacaa      3780
     cagtaaacaa cttgcaaaca aaactgaatg acttcaattt gctatgcaag gatctcggtt      3840
     ttgcctttaa tccggccaaa tcgacggttg ttaacatagg caaaggtaac acaaaagaag      3900
     caaacataat tattgaaaat gtcgcgatgc caaatcaaaa aaaagtcaac tttctaggtc      3960
     gcattctaag cgcaaatatg tcctgtacag atcagatcaa aaaaattaaa acagaaacca      4020
     aagtcagtgg gaaaattcta cgatttgcaa ctactattaa atctggccta aaaaccaaag      4080
     taagcactaa catcttcaag tcctttgtga ggtccaagca agaatatgcc ataaccagcc      4140
     tagccgaaat gggcaatggg gcaagcaaga actttgaaat tgcgcaagcc aaggccctga      4200
     gaaggtgtgt aggtgttcca ccgggcaaac acgaaatttt cgtgttggct ggtgtaatgc      4260
     cgcctgtttt cagagccaaa tggctcaccg ccaaaaagct tttcaaagtg aaagcgatga      4320
     acccatctct ctttagtcaa ctcaaaaatt caccagcaga aacaagctac acaagcacaa      4380
     taagggattt taggtttttc tttgacaata ctagaactag ggattttttc ttagtatcaa      4440
     acaagataaa catccaagac aaactactgg caaaaagtaa ggtggactac tcgactgagg      4500
     aagcaaatgc aatatatagt gaagaaataa acagatactt ggataaggga tggagcatca      4560
     tatccaccga tgcgtccata aacacagagg ctataggaac aggaatcatg gaattaccca      4620
     gtcacaaagc acacaaattt aaaataaacg catctctctc atctgtagga gcagagctag      4680
     ctggtatcaa aatggcatgc actatatgcc aaagcaataa atacaaacac gctgtgatat      4740
     tctgtgatag cctaggagca attagtttag ttaaaaacaa aaaatctgac tcgtacttag      4800
     tacacgaaat acacaatata attgaaaaat cagacgtaca aaaacttgac gtaatttgga      4860
     taccagggca caagggtatt ccgttaaacg aaaagactga taggctagct aagttagctg      4920
     ttagggaagg aggagtggta gatataaaac taagtaccaa agaagctctg agggaaatta      4980
     aaaagaaaat agaggaacaa tggaatgagg attacaagat aaaatgcaca aacaaaggaa      5040
     caaatcttat aaacgtcttt cctaaaatac ctaagaaacc ttggcaccat gatttaaaat      5100
     tgaaagcaaa aggatttaaa gtactaaaca gactaatgac aggacataca tatgacaaaa      5160
     ccttcttaca taggataaaa gctatagact ctaatttgtg tgagatctgt aatgttcctg      5220
     aatatgcgga gcatctaatc tttgactgcc caaaatttac cacactccga aaaaaattta      5280
     aaatatttaa atattacagc aacttgaatc atttttttca agttaaagaa ccactccaat      5340
     ctaaatttct agttttactt ttattaatca ctgtagttta taattttcct gttgtttagg      5400
     catattaatt cggcagttgg ccaataaacc aacctgccga gctcaaaaaa caggaaggct      5460
     tgctgaaaac caccttctgt ggttttctta aagagaaaaa aaaagagaaa aagaaataaa      5520
     aacaatgaaa aaaaaaagag aaaaacaaac gaaaaacctt attcaataaa aaataaagat      5580
     ataagaaaat caaaaaaaca aaaaattaac caaagcaaaa caaaaaacaa actagaggaa      5640
     aaaaaaaaaa atcaaagtag tgcaaacaaa taaacaaaat attgtctaca agggtagaat      5700
     gtcaacctag acagctaccc tagactgtcg tttccaatag caaggcgttc tcatatcgtc      5760
     agtgtggccg tatctacgtg agcgtacccg atacacgctc tcaaaccacc agtatctggt      5820
     caatgcggca gtgttgtcgc gaccaaaagt aaaaaatcat cggtcagatg gtttaaaacc      5880
     aaaaaagaaa a                                                           5891
//
ID   Outcast-7_DTa repbase;    DNA;    INV; 5447 BP.
XX
AC   .
XX
DT   25-AUG-2021 (Rel. 26.11, Created)
DT   28-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5447
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (28-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 5447 BP; 1889 A; 1034 C; 989 G; 1535 T; 0 other;
     gcaatttctc tgctaaccct aattaagcgc gatttaatct ccaaactggg taagttttaa        60
     gctggaaaat atagtgaata aagaaaagtg agcaaagaaa agagaaaaaa aatggccgat       120
     gccgacatgt cggcggctgg cccagaggag gatgctgaca tttctggtga agaggtgttg       180
     ggtgatgcta actttgttgg aaggaaacca acaaaaagat taaagaccaa taaaaacaaa       240
     tctaaagtct tcgacaagat taaaaatggt ggcatcacga atgaggttat aaacgaaatt       300
     ttaggtgtaa ctccaaaaaa caatgcgatg gttgtggaga acgagtctat aacatctaaa       360
     tccagttcaa cggtttctat taattcagtt gttgcagtac ctattaacaa tacatctact       420
     acctcgcagg agaatgctga ttttaacctc aaaacaactc cggttaccgg cgcgtttacc       480
     agggatgaca taaacttata tgaagaggga cacaatggtc cggcttgtgt ttttgttaat       540
     acaagcaaat gcaaggaatt tgagaacacg aagattaaaa atggcctcta cttatacgaa       600
     aaaattaaaa atctaaatct gaaaggtatt caaagcatca aagctgtagg catttcgatg       660
     tttaaaattt atatgtgctc ggcaagggat gccaatttac ttgtattaaa caaaaagctt       720
     gaaggtatta attttgaggc ttttattcca aaaagctaca ccgaataata tggagttatt       780
     aagggcattc ctctgtcata ttctgaggag gaactgcttc ataatataga gtcggaagtt       840
     aagattaagt cggtagagag gttgctcatg aagtcgaaag aaaagtcaag aaatgctgat       900
     gggaaagtgg aactagttcc tactctctct gttaaaatag gtttttccaa cgatgaaatt       960
     ccctcgtcaa ttagactctt tggggtatgc tctctacttg tgtcacattt catacctaag      1020
     gtaaggcagt gtttcaaatg tggtcgtttg ggacacacgc tgaatcgctg tagagcaact      1080
     gtcaaaaaat gtctagcttg tggtaaacca ggtggttgtc aggtgggttg caaaggtgta      1140
     gagtgcattt tatgcaggga atctggtcat cgtgcttgga atgtgggtca atgccaggtg      1200
     tggaaaaaag aaagtgatat tttaaagctc atgacaatta aaaaattagt tcgtaatgaa      1260
     gttcttgaac aattttttcc aaagaattct tttgaccttc taaaggatca ggacaaaaac      1320
     tttcccaggt tggacaaaac agttccaaat acagtcaaca atgacatcgc tgcaaatgct      1380
     gtgatgacac ctagaaggta tacctcgatt gttaaaagac cagtagtacc aactcaaaaa      1440
     gtccattaca cgctggaacc gtatacgcat aataacagtg actggaaacc gaaatttcca      1500
     gaaaaaacag atgaagtatt atcaatttgt aatgacctat ttaaaattgt ttcactcttc      1560
     tcgaatgata attctgaaat taaagaggca gttgcttctt tgcaaaataa attttacagc      1620
     attaaaaact caaagaatcc ttttaagaac acctcaagaa acaacaaacc ttcgattaac      1680
     aatttaaatg acaattaaat ttcttcaata taatgtccaa tcactgattg ctaataaaaa      1740
     taacctagaa tttcttttaa atcatgaaaa ctatgatatt tcctttctct ctgaggtttt      1800
     ctctcatgat ggtccacaaa atcgcagaaa aatactaaat ttcaaaacta ttgagaaaac      1860
     cagacaagat ggatatgggg gagtcgccct tgtattaaaa aatggtataa ctttccaaca      1920
     actggccttt gcttgtgagg cagacatact gatagttcaa actaagaatc tagttacaaa      1980
     ttttaccctg gtttcagtat acctacagcc ttcaatgccg aatgcttctt ttaaagatgt      2040
     atggcgcaga ctaatggcca gattagaaaa cattcaaaac gtaataatag caggtgacat      2100
     gaatgcgaga aatgtgacat ttggagattc gattaccaac gcaaaaggca ggtttcttga      2160
     acaagaaatg gctgcggctg gttttgtttg tctaaacaat ggaaagccta cttttaaagc      2220
     atatgctgac agatcctcaa gttctgttct tgatcttacg tttaccaatt caagcgccca      2280
     ttttatctgg agcatcaacc ctgtatggat tggtggtagc caccactttc caatcacttt      2340
     tgagctaaat actgtcctga aaaaaaagga aatttctagc taaaaataga ctcaaatcta      2400
     tgcttggtaa aatcaatgaa ccctcttcaa tccaagagct atctgtcaag atgaaggaaa      2460
     aaattaattc agctacgttc atattagcca aaaatcagca tccaaagtat tggtggactc      2520
     aggaattagc tagagaattt aggataacgg tggctgccca aaaggaagct attcgggact      2580
     ctaccccaga gaaatgtaac agggcttctc ttctcacaat caggtggaaa gaaacagtca      2640
     gaaaggcaaa gaaatccagt tacatgaaaa agattgagga aatcaacact cagccctcat      2700
     caaaaaaagc gtggcgcttt ctttcaagcc taaaaggtaa tcaatcttca gatcatagtg      2760
     agctcagcga gagcaatcat caagaatatc tgaaaattct taaaaatcaa gtagctagca      2820
     catacgtttt cagtccaata gaatctaatt ctcagaatat gcttgaaaga ttctccatag      2880
     gtgaactgca ggatgttctt ttgaagaaaa agggttcagc gggtggtcta gatggcataa      2940
     cctatgaaat ggtgaatgct ttgtctgata atgctaaaaa agaactgctt aatatctttt      3000
     atgaacatgt tttaaatggc gaactaccac aggaatggag attaattaaa gtcgttccaa      3060
     tccctaagaa aggaagagac ttggataatc tacgcaactt tagaccaatc tcacttatct      3120
     ctgtcctagc gaagactata aatggtatca tcaagaacag aatcacatcg ctaatagagc      3180
     aaaatgacag tctccctaca agatcatatg cgtataggaa agatagatct gctggaatgt      3240
     gtctaaatga cataatttca aatgtcacct ttcaaaaaca aaaaggaaac acagttttgt      3300
     tggtatttct tgatattatg gatgcgtata atgctgtgtg tcttaaaact ctagatctcc      3360
     tactcggact tgaaccaatt cctcatattt acactgactg gatcattaac ttcttatcaa      3420
     aacgagttct tgtcttagga aactgcagag aagaggtttg tggtggtata cctcagggta      3480
     gctgtctatc tcctcttttg tttaatatat actcaaaaag actacatcaa attaatgata      3540
     acaacactag gatttttcag tttgcagatg actttataat aatggttagt cataaagttg      3600
     aaagtcaagc cattgacatt ataaatgaaa agattcacaa ttttcatctc ctgtgtcagg      3660
     atataaatct caacttcaat ccagctaagt cagcagctat gctgatgaga gcaggaaaaa      3720
     aaaaagtaat taatctgtct cttaataaca taagaattga gcaagtgtac tccataaaat      3780
     ttcttggcag gattattaac tctaacatgt caaacactga tcatgtcaga aaagtcaaat      3840
     caaatacaga aagtggaaat cgtctgatgc aaatggctac caccattaaa gccggtcttc      3900
     gtcccaaagt ggcagtaaac atatacaaaa gctttatacg ttcaaagcag gagcacagca      3960
     tttcatcctt ttcaaacttt aatgagacct caaacaaact aatgagtaca gctcagctct      4020
     cagttctgag aagatgtgta ggtgtcactc caagtacccc aactcatctt atttatgcct      4080
     tagcagggga attacctccg attttcagat cgcaaattct aacagccaaa gaaatgctta      4140
     aggtcatgtc aataaatcct gatacataca gtttagcaac gttactagtt aaggactcta      4200
     gttataatcg atgttacatg ttttttcaag acatctttga tgatacaaga ccagcatcaa      4260
     tatatcagtc ttctaacaaa ctagaactaa ttgggaaatc ttttatccaa agtaaaaaag      4320
     acatgacgtt agaacatatg cgccatgatc accttgcatc acccaatctg catgttaatc      4380
     ttaacttcct gattcttgcc acggatgcct ctatctcgga tgagacggca ggcatggcta      4440
     tctgtgatat aactaacaaa gttaacttaa agtacaaatc gccatacaat atgcctgtga      4500
     taaaaagact gagtatctag tattatacac cgatagttta ggctctataa attccctcag      4560
     aaggaaaagt tcaaaatgct atctatgtag tgaaattcat ggtctgctct cctggcaaga      4620
     gcttaaacta gccaaaatta tctggacacc aggccatgca ggtgttaagg taaatgagga      4680
     agctgacagg gtggcaaaac aagccactac agacggtcaa actatagtaa taaactacaa      4740
     cacagttgaa gcgctcagag agatcaaaaa aagagttttt tctagctgga atgaccacta      4800
     caaggagcta tctcggtcta aaggatcttt ttttgcagac atttttccga atgtagaaga      4860
     gactccatgg cattcacatt taaaatggga tgcttatacc atcaagctaa tcaacagatt      4920
     gctaacaaat cacacctatg acaatgtata cctctttacc attggtgtca atcctaccta      4980
     tatttgtcaa acatgcaacc aaattgatga ctcaaatcat gctatatttg aatgcctaaa      5040
     atataccacc caaagaagaa gattcaaaat ttttaatcgc tttgccaatc taaaagaatt      5100
     acttctaact aaagaattgc tatttttcag agaggtagca gccttcatca agcagatcaa      5160
     cctagagctt taattctcca caagttttct ttttcattaa taattattag ccctagaggc      5220
     ttcacataac cagcgtgttc cccgcccttg tcccttttcc ccttccactg accctgtcct      5280
     ggccctaaaa actctttttc cctgactatt ctggtcaaat tctcaccact gggaacgctg      5340
     ctatgacatt ctacatcacc gtccactgta cctggccgca tcaatatcgg ccaaataaat      5400
     cgacactgcc cctactgtcg ataagtcaaa aaaaaaaaaa aaaaaaa                    5447
//
ID   Outcast-8_DTa repbase;    DNA;    INV; 2667 BP.
XX
AC   .
XX
DT   25-AUG-2021 (Rel. 26.11, Created)
DT   31-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2667
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (31-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 2667 BP; 935 A; 468 C; 378 G; 886 T; 0 other;
     ataccacact ttgcactcaa accaccattc caacaagttg ggatcttcct aattttagtc        60
     ttaactttaa tttagatgat tttataactt ttcttaaaac tagaaaccca aattcggcta       120
     aaggattgga caacatttct tacaaaatga ttctgagtct tcctaataat caattggaaa       180
     atttattatc ccttttaaat gaaattttta ttagcgggac tatccctgat agttggcgca       240
     aaataaaagt ggttcctgta ccgaaaaaaa atttagacgc ctctattgtg tcaaacaata       300
     gaccgatttg ccttcttagt attttattta agtgcttaga agatatgatt aaagtgcggt       360
     ttgaatcttt tattaatttt aatcacttgt tacccgatag atcttacgct tttaggaaaa       420
     atcactcgac ttcccaatgt attaatgacg taataaataa tatagcaaat cttaaagcaa       480
     aaggaatgca agttatagcc gctgtattgg atataagtaa agcttttgac gcagtaaata       540
     ttcctttgct ctgtcaaaag ctaacgagtt ataattttga tagtgcatat ataggtttca       600
     taattaaatt tctagaaaaa agagttttag taagtaataa ccaagaaata gttgtaagca       660
     aaggtgtatg tcaaggtagt tgtctgagtc ccattctttt taatatttat actatagatt       720
     ttcattccat caatgacgaa aactgtatac tctttcagta tgcagatgat ttctttttag       780
     tgtgctatga tagacagttt gcaaaagcta gagatatttt agaacttaag ataaatgctt       840
     tcaataactt gtgcaatatc aacaatctta cttttaattc caataaatct tcaataatac       900
     atttcaatag aagaagacag cctgcaaata tagtctgtga taatatagca atttcagaag       960
     tagaaaaagt caactattta ggtagaatta ttagtgctaa taattcctca gtcaatcata      1020
     ttgatcagat tatttctaaa gccaataaaa ctaatatgtt tctgcaaatg ctcagtggtt      1080
     gtcactttgg tgttcaccca aataaatcgc ttttatttta taaagccttt gtacgctcta      1140
     aattagagta ttcatgttca tcatttgcta atatttctgc tgttgtttct aaaaagataa      1200
     aagtgcatat aaattttgat ttgcgacgtg ctcttggttt aataaaatca actcctgtaa      1260
     atataattta taatttagcg tctgaactcc ccccggagtt cagacaaaaa tttataactg      1320
     ccaaagagtt agccaaaaca tttgcatacg gtttacctgc agcatctctt ttgtccaact      1380
     cttttattgc taaaaacaca agttatgcta gaatatattc ggaatttaaa tacatctttg      1440
     acgccatcgt gcctttgaac aatgttttaa tttctacgcg caagattaca actgacacag      1500
     acttttttaa aggctcttgt ttaaataaaa aatcagctaa tgctgctcta ataaataccc      1560
     ttatccagga aaaaattaat tatctgttat ccaaaaattt tgaattattt tatactgatg      1620
     gctctgtaaa tgaaaatttt acaggttgcg cttttgttca caaaagctca gaaaccatta      1680
     aaagtttttt tacaaacaaa aaattatctt cactcacagc tgaattaatc gccatagata      1740
     aagccatcga ctttgccata gataaccaat actttaaaat tgctatttta actgatagtc      1800
     tcaatggggt cttatcattg aaaaaatctc atccagataa ctacatcgct aagcaaatca      1860
     taaacaaaat cgaaaatgct agatttctat tttcaataga aatgcatttt attcaaagcc      1920
     acgtaaatat cgaagataac gaattagctg acattgccgc taaaaatgcc aaggacaatg      1980
     gtgttttctt ctgtgctcgc tggcctttga aggacgctat tacttatata tacaatcaaa      2040
     ttcacatgga atgggaaaat gaatataatt tatactgcag cggaagggat agaggtttca      2100
     ctcgcctttt tccatatgtt acttcaaagc cttggtttaa ggataaaaac tgtgacctca      2160
     atcggttaga aattaagcaa atcaaccgtc tattgagcgg tcatggcttt gacaaatgct      2220
     cattagctaa aatgaaagtc actaacaata atctatgcga cacatgcaac gtaccagaag      2280
     atgcatctca ccttattttt aattgtcccg ccttttcaaa tacacgctca cattttccaa      2340
     cactaaggaa ttacaatgat atttatcgtt tctttgataa agaacccatc gaatcttaca      2400
     agcaaatcac acatttcata cgcactgcta atattaaatt ataaatgtaa tcacctaaca      2460
     tcacaattaa tgaactctta atcattaatc atcattacta aaattcatca acatgtttaa      2520
     tacaaacaat cattcgatat tcatcgccta caattgtttt caccacacac ataggagatg      2580
     gcgttaaccc gtttttagac gaggaggcca aataattctc tcagctgctc gaggttgaga      2640
     gtaacttaat accaaaaaaa aaaaaaa                                          2667
//
ID   Outcast-9_DTa repbase;    DNA;    INV; 5820 BP.
XX
AC   .
XX
DT   25-AUG-2021 (Rel. 26.11, Created)
DT   08-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5820
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (08-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           205..1776
FT                 /product="Outcast-9_DTa_1p"
FT                 /translation="MALSAKDKSLSLDAAITKRPKITGTQKKRRPNEIEAN
FT                 KEVEERMEMDHTETQENITDSCETNAQKGINLENGSKSQPKEGDKENGIAS
FT                 NKGKHSMQVFEPLFYPPNYKGPFFVYIDKMTEHGDNFNRLNRKPINALELN
FT                 VVLFNLKLKDIVKVNKIGYGRCKAECRSAKAANDLVNSNLKNEGYEPKKIR
FT                 TKFSLPELKEFISSPIPIHDIIRVNRKNENKDMVPTSRVKIIFEGAQIPEE
FT                 IIFLYTKVKVEMFVPFSQCFRCFRFGHFAQHCKQTHEVCRDCSFVHPREEK
FT                 CIVLKCANCKQPHSATELECPARKRAFAIQKCMTVENLSRVEVKTKFPALF
FT                 EKQTANSFEIFNSSDFPLLQTQKKSAIPVLQNNMKAAAESIHNFIPYNKVV
FT                 KTNQNRINENRNAQVTMDSYRSAIRENSYSLNEKFIPRPSQSSIFSQLSQS
FT                 SNFSQQQQTPSPSQPCLTQSSALETAENSLISISSQISSFLLENNTDILAD
FT                 ARTYLENLRTRIARTNSEIDVQKWRSGF"
FT   CDS           join(1887..4568,4562..5464)
FT                 /product="Outcast-9_DTa_2p"
FT                 /translation="MKILQYNIQSLTANNNKQLLELFLVKNNVDIALLSEI
FT                 WIKNNAMCSLANFNFVCKPRNDGYGGVGIYIKKTIKYKIINCDTEIETIGI
FT                 STINLKHNINVFSVYAPPSTNINDFEKGCRDTLMTATALGGLSIVGGDLNA
FT                 KSSIWGNSTHDNKGQILEQVLISAGFSCLNDGSPTYSPNPSYFSALDLTFV
FT                 NKDSLSLKWSSSNSKIFNSNHFPIILELTNFAASTNSLKLLHPQILDDFSK
FT                 IKITSLDNLTNITNNILKSNTVKINENNKFIPKKYWDETCERLFRLRNASR
FT                 QKYYKTKLLSDAKTFFENNKKLNNYFYKVRKENMNKLADDLTNPKSVKEMW
FT                 QTIKSLKSYKQIKPTSSQYNDSDHIAFLHQISSAPDTPECIQIEFPSFDIQ
FT                 TLNRTYFLASDLTNFLKTRNPNSAKGLDNISYSMLLSLPPDEIQNLVSMVN
FT                 EIFNDGTVPDSWRRIQVVPVPKKNTDSSIITNNRPICLLSVVLKCLEGLIK
FT                 VNMEMHIDSFSLIPNRSYAFRKNHSTAHCINDVINNIANLKAKGFHVTAAV
FT                 LDISKAFDSVNIPILANILLDRGFNSLVINFIIGFLSKRVLTIGNSEITVS
FT                 KGVSQGSSLSPILFNLYTSDLHAISDHQSTLFQYADDFFLITFDKDFTTAR
FT                 NVLEHKVNVFREMCNSINLTFNPLKSSVMHFNNRRKILNIMCNNLAINDVD
FT                 QVIYLGRTICTNNSSIGHVKHIIAKANKSNMFLNMLSGCRFGIHPSKALNL
FT                 FKAFVRPKYEYACSSFANISKTVTSNIKVHANFFLRKSLGLIKSTPVNIIY
FT                 HLAGELPPEYRLKFTTAKELAKNFAHGLPAASLLTNDFAAKNTSYIKVYSE
FT                 FKDIYDSIASLNVSSYKSRKISMDVDFFKGIIPNKKLSNTVYGLVNSLLKE
FT                 KLDILNKKGFQILYTDGSVQENFMGCAFVHSNSNTIKSFYANTKRSSLTAE
FT                 LTALEKAIDFANSENFMKVAILTDSLGSLQTLKKSCVSNCIALDILKKIEN
FT                 SQSILYFELHHIPSHLNIEGNELADSAAKNARNGGTCVSLRYTLNDAITHL
FT                 YNRIMLDWERDYNTFCIERNRGYCLLFPYVNGKPWFKDKNCSLNRLEVKQL
FT                 NRILSGHAFDKYTLHKLKVFDNSICDCNSNSIEDISHILLKCSKYGPIRRN
FT                 FPLLLKYDDIYRFFAHEPITNYTYITQFIRSAKIDL"
XX
SQ   Sequence 5820 BP; 2030 A; 1108 C; 896 G; 1786 T; 0 other;
     cacagccgtt tcaactcccg aataggtcgg gtcgtttttc tccactattc agcgaagaag        60
     tgaaggcagc taaaagtgtt tcaaactaac cacaaaacca caaccaaaac cacttaaaat       120
     taatttcagc tcgtttatat tttttttgtt tgtgattaca aattttaaaa gtttaaaacg       180
     gggattcatc cccttaagca taaaatggcg ctctcagcca aggataaatc cttgagctta       240
     gatgcagcca ttacaaaacg cccaaaaatt accggaacac aaaaaaagag gagaccaaac       300
     gaaattgaag cgaataaaga agtggaagag agaatggaga tggatcatac agaaacgcaa       360
     gagaacataa cggattcatg tgagacaaac gcacagaagg gcattaacct ggagaatggc       420
     agtaaaagcc aaccaaaaga aggagataaa gaaaatggca ttgccagcaa taagggaaag       480
     cattctatgc aggtatttga acctcttttt taccccccca attataaagg accgtttttc       540
     gtttatattg acaaaatgac cgaacatggt gataacttta acagactaaa taggaaacca       600
     attaacgcat tagaacttaa tgtagttctt tttaacctta aattaaaaga catagtaaaa       660
     gtgaacaaaa ttggctacgg gcgctgcaaa gccgagtgca ggtcagcgaa agcagctaat       720
     gacttggtaa attcgaattt aaaaaatgaa gggtacgaac ccaaaaaaat ccgcaccaaa       780
     ttttctctac ctgaattaaa agaattcatt tcatcgccaa ttcccatcca tgatattatc       840
     cgagttaata ggaaaaacga aaataaagat atggtaccta cttccagggt taaaataatc       900
     tttgaaggcg cacaaattcc ggaggaaatc atcttcttat atactaaagt taaagtcgaa       960
     atgtttgttc cgtttagtca gtgcttcagg tgtttcaggt ttggccattt tgcccaacac      1020
     tgcaaacaaa ctcatgaagt ttgtcgcgat tgttcctttg tgcatccaag agaagagaaa      1080
     tgtattgttc taaagtgcgc aaattgcaaa cagcctcatt ctgctactga gcttgaatgc      1140
     ccagcaagaa agagggcttt tgctatacaa aaatgcatga cagttgagaa tctttctaga      1200
     gtagaagtca aaaccaaatt tccagcttta tttgagaaac aaaccgctaa ctcttttgaa      1260
     atttttaatt cttctgattt tcctctgctt cagacccaga aaaaatcagc catacctgtg      1320
     ttgcaaaaca atatgaaggc tgctgcagaa agcatccaca attttattcc ctataataaa      1380
     gtagttaaaa ctaaccaaaa ccgtataaat gagaatagaa atgctcaagt cactatggac      1440
     agctacagat ctgcaattag agaaaacagt tattctctta atgaaaaatt cattcctcgt      1500
     ccctctcaat cttccatttt ttcacagtta tctcagtctt ccaatttttc acagcaacaa      1560
     caaaccccct ctccatcaca accttgtctg acccaatctt cagccctaga aaccgctgaa      1620
     aacagcttaa tttctatctc ctctcaaatt tcctcatttt tactagaaaa taatacagac      1680
     attctagcag atgctagaac atatttagaa aatttaagaa cacgtattgc cagaacaaat      1740
     tcagaaattg atgtgcaaaa atggcgctca ggtttctaaa ttattatttg tttttttgtc      1800
     attttatttt tagaagcatt tcagtattat atttattttc ttattttttg ttatttgttt      1860
     atttattttt attttatcct taatttatga aaatactaca gtataatatt caaagtttga      1920
     cagccaataa taataaacag cttcttgaac tttttttagt caaaaacaac gtggacattg      1980
     cccttttgtc tgaaatctgg attaaaaata atgctatgtg cagtcttgct aattttaatt      2040
     ttgtatgtaa gccccgtaat gacggttatg ggggtgtagg tatttatata aaaaaaacta      2100
     ttaaatataa aattattaac tgtgatacgg aaattgaaac cattggaatc tctacgatca      2160
     acctaaaaca caatattaat gttttcagtg tttatgctcc gcctagtacc aacataaatg      2220
     acttcgagaa aggttgtaga gataccctta tgacggcaac ggctcttggg ggactatcta      2280
     tagtaggtgg tgacctaaat gctaagtcgt ctatttgggg aaactctacg catgataata      2340
     aaggtcaaat tttagaacag gtcctcattt ctgcaggctt ttcctgtcta aatgatggtt      2400
     cccccacata ctctccaaat ccgtcttatt tttctgcact tgatctaact tttgtaaaca      2460
     aagatagcct ttctcttaaa tggtcttcct caaattccaa aattttcaat agtaatcatt      2520
     tcccaataat attagaattg acaaattttg ctgcttctac gaatagtctt aagctgctgc      2580
     acccgcaaat tttggacgat ttttccaaaa ttaaaattac ttctttagac aatctcacaa      2640
     atataacaaa caacatttta aaaagtaata cagtgaaaat taatgagaat aacaaattta      2700
     taccaaaaaa atactgggat gagacttgtg agagactttt tagactaaga aatgccagta      2760
     ggcaaaaata ttataaaacc aaacttttat cagacgctaa aacttttttt gaaaataaca      2820
     aaaaactaaa taactatttt tacaaggtaa gaaaggaaaa tatgaataaa ttagcagatg      2880
     atttgacaaa cccaaagtca gtgaaagaaa tgtggcaaac tatcaaatcc ttaaaatctt      2940
     ataagcaaat taaacccact agcagccaat ataatgattc tgatcacatc gctttcctac      3000
     accagatctc atcagcccca gacaccccag aatgtattca aatagagttt ccctcttttg      3060
     acattcaaac cttaaataga acgtactttt tggcatctga tctcactaat tttttaaaaa      3120
     cacgtaaccc aaattctgca aaaggtttag acaacatttc ttatagcatg cttctctcct      3180
     taccccctga cgaaatccaa aatttggtat ctatggttaa tgaaattttt aacgatggca      3240
     cagtaccgga ttcttggcgt agaattcaag ttgttccagt cccaaaaaag aacactgatt      3300
     cgtctataat tacaaataac cgaccaatct gtcttttaag tgttgtgctt aaatgtctag      3360
     aaggtcttat taaagtcaac atggagatgc acatagatag ttttagttta attccaaatc      3420
     ggtcttacgc ttttaggaaa aaccactcca cagctcactg catcaacgat gttattaata      3480
     acattgctaa tctaaaagct aaaggttttc atgtcacagc agcagtacta gatataagta      3540
     aagcttttga ttcagtcaac atcccaattt tagcaaatat tcttttagat aggggtttca      3600
     actctttagt tattaacttc ataatcggct tcctaagtaa aagagtttta actataggta      3660
     actccgaaat tactgtgagt aagggagtca gccagggtag cagccttagt cctatacttt      3720
     ttaatttgta cacctctgat ttgcatgcca taagtgatca tcaaagcacc ttgtttcaat      3780
     acgcggacga tttctttctt attacttttg acaaagattt tacgactgca agaaatgttc      3840
     ttgaacataa agtaaatgtt tttagggaaa tgtgcaattc tattaattta acgtttaatc      3900
     cgctcaaatc gtctgtgatg cattttaata ataggaggaa aatattaaat attatgtgca      3960
     ataatttagc tattaacgat gtagatcagg ttatttattt aggtaggacc atttgtacaa      4020
     ataactcttc tataggacat gtcaaacata tcatagccaa agctaacaaa tccaatatgt      4080
     ttttaaatat gttaagtgga tgtcgttttg gcattcatcc tagcaaggcc cttaatcttt      4140
     ttaaggcttt tgttaggccc aaatatgaat acgcctgttc ttctttcgct aacatttcga      4200
     aaacggtaac aagcaatatt aaggtccatg caaatttctt cctcaggaaa tctcttggac      4260
     ttataaaatc gactcctgtt aacataatat accatttagc aggtgagctt cctccggaat      4320
     atagattaaa atttacaacg gcgaaggaat tggccaaaaa tttcgctcat ggtttaccag      4380
     cagcctctct tttgactaat gatttcgcag caaaaaacac tagctacata aaggtttact      4440
     cggaattcaa agatatttat gattcaattg ctagtcttaa cgtttcttct tataaatctc      4500
     ggaaaatatc gatggatgtg gattttttta agggcattat cccaaacaag aaattgtcta      4560
     atacggttta gtcaactcgc ttttaaaaga aaagctcgac attttaaata aaaaaggttt      4620
     tcagatttta tatactgacg gctcagttca agaaaatttt atggggtgtg cttttgtaca      4680
     ttcaaattca aacaccatta aaagctttta cgctaatact aaacgttcct cgcttactgc      4740
     cgagctaaca gccctggaga aagccatcga ctttgctaat tctgaaaatt ttatgaaagt      4800
     agccatcctg actgacagcc tgggttcgct gcaaacactg aagaaaagct gtgtttccaa      4860
     ctgcatagcc ttagacatac tcaaaaaaat agaaaatagt caaagtatcc tatatttcga      4920
     gttacaccac atacctagcc atctaaatat tgaaggaaac gaattggcgg attcagcagc      4980
     aaaaaacgcc agaaacggtg gcacatgtgt atccctgaga tacactctaa acgatgccat      5040
     cacacattta tataatcgca tcatgttgga ctgggaaaga gattataaca ctttctgcat      5100
     agaaagaaac agaggatatt gcctattatt tccgtatgtt aacggaaaac cttggttcaa      5160
     agataaaaac tgcagtttaa accgtctcga agttaagcaa ctaaacagaa ttttaagcgg      5220
     acatgctttc gacaagtaca cgttacacaa attaaaagtt tttgacaatt ctatttgcga      5280
     ctgcaactcc aattcaattg aagatatttc tcacatttta ttaaaatgct caaaatatgg      5340
     acctatccgt agaaatttcc cgcttctact taaatacgac gatatatatc ggttctttgc      5400
     gcacgaacca ataacaaatt atacctatat tactcaattc atacgctcag ccaaaataga      5460
     tttatgatta acatttcatc acactattac gcattaatac atcacacatt tttaatacat      5520
     catatcataa tacacattaa tacacaaata cacatataca cattctcaca tatgcaaaga      5580
     atctcacact aatatcgata acactttcat cggatttcat cgcacatctt cataaacaca      5640
     caacacgaca tctcacactt atattcgttt tgatcaattt ctaaccagtg tcttgaaatt      5700
     tcatttcaca cataggcggt ggcgtttacc cgttttataa tatacgggac ggccaaataa      5760
     ttcttcccca attgttttgg ttggtttgga agtaacttaa tactcaaaaa aaaaaaaaaa      5820
//
ID   Outcast_Ele14 repbase;    DNA;    INV; 5448 BP.
XX
AC   .
XX
DT   23-OCT-2010 (Rel. 15.10, Created)
DT   23-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Aedes aegypti: consensus.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast_Ele14.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5448
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5448
RA   Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (23-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 6 sequences with >98% identity, and ~98% identical to the
CC   original sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           229..1641
FT                 /product="Outcast_Ele14_1p"
FT                 /translation="MGAEDDPPDGGGCTSXRPDWGQDGEAAAAVVRNGIQD
FT                 DNKAKREDVIYTHRDAAPYRVYFELRNDENGAKKINKFGLGSTLRSNDTFK
FT                 RHIVDMKYAGRQKILVFLNSYVKANQLVKSINESNSIYRAYVPQHLVCVTG
FT                 VIAGIPAEIPIEQIEDDLECDVPIVGVRRLTRFIDGVKIPTNRVSVTFRTD
FT                 SLPDKVRLFCCSSRVQPFVQKVVICLNCLRTNHRTANCRSAKRCQRCSERH
FT                 DDIHEYDRCEKGKKCVNCRSTDHTTTDPNCPEIKRQDKIKKLMAKRNLTYA
FT                 EAKEQIPIANQNLYETLYDAEDFPTPAESFADMTRGNFRWKDPLREQWMQA
FT                 NNERVKMQAAVNIGKSPDKQPNRKRKTTTNTDKTTEKRNHILGKEAAEATN
FT                 GVALINNHRVDEKERWENMSRQIMERVQKEQHNLLMTFYADFIAQLDNDET
FT                 TKEKFMTCTKRHFNFAKSVIHHCDTK"
FT   CDS           1663..5337
FT                 /product="Outcast_Ele14_2p"
FT                 /translation="MIARNQYKMKINKISLYLIPNLKFGELSKIKILQCNV
FT                 QSLDKNKAEIHRVFFGEGFDASFLSETWTNATLETSKKYRIAGCHLIACSR
FT                 DDGYGGSAILLRNNHSYTKINLPALSNKTQAVAISVLSMKLVLFSVYVSPS
FT                 ISVPDFKEDLQILFDTVRQFENVIIGGDFNAHHGDWGDENMDRKGDILADM
FT                 INDSSCLLLNDGSATFVPVRLGCRSSAIDLTMCSPQIXSKAQWRTLAYGIG
FT                 SHHLAIEITISNEVDERPKYCYDNKKIATSIANLEPTKIRNVEDLKSAVNR
FT                 IRKCNRRKDNRTPKFWWSDTVDQAWKEKTEARRVFNRESSVENLIEFKRKA
FT                 AIFQKLKRAEIRNQFEEFSSEIGPQTSSKELWNKVGRLAGKRIKRIENNTL
FT                 LDDSNAANQFLDKHFGPNDAEEWIEPVPVASYNLLDFSKWEAIIGKKKKRS
FT                 APGEDGITYEALRQLSPVVIRNVLEDLNRMWIRGSLTDELKTIKIVAIPKP
FT                 GRNQSSPEGKRPISLVPTMTKIMNTAVLDILQSHLHQNQILPEKSFGFRRG
FT                 TSTSTAICFVINEIKRNKREKLLTALICVDLSNAFNAVRTDILVETLARMR
FT                 VTVEVVTWISSFLKNRRIVLNQRNGSISRRISNGLPQGDVLSPTLFNIYTA
FT                 VLHSIRIEGVTLVQYADDFEIIVTANNWETLGIRAQQYMDKFVETCNELNF
FT                 AINSEKSSVMVMSASSRSLNIKINGNVVETVQKQNYLGITIDRFLTFGAHI
FT                 RLVREKVQERLCMLKVLNGARTGTHPDTMLKVYQALIRSIMEYGCSAHNNA
FT                 SKTTRRIVEVINNQSLRKVTGSTKSTPLNTLSAISGQPPLNFRQEMVTCRE
FT                 IARCLSRDNVLGKQLKNIEDEEEHGQEKFSYMEQIYLRNRTTFDVLMQTEQ
FT                 IVDVHEVEINPYLNDENPKKDHVSQVKLKQLSLGMINGKYRGRGRIWTDAS
FT                 KDGEKCGIGIFVEGNKARYYYRLLHNTSITSAELTAIWLAMQIVEKDQLMH
FT                 YVILTDSRSSCQILENGVDSGEGETVIAEILQVAKRWKVTIQWVPSHIQLA
FT                 GNDVADMLAKEGTKDEAPILENKLFLKDVCLKFTKQLEEKTRRWYEELSQE
FT                 KGKKYYGIRPVWNAQPWFAKLDLKGKDIRLLNRLMSGHDYSKYWLAKMRLK
FT                 DSPDCDLCDEPETAEHVILHCPRYGMQRHHYSFDCRYANLEEIFKTGDKEL
FT                 FEEVANFVSEMKLEL"
XX
SQ   Sequence 5448 BP; 1880 A; 1066 C; 1277 G; 1222 T; 3 other;
     atcattcgag tgcgacgcgt tgaagcgagc gaaagttgac acgttttcgg cttggtgaaa        60
     aactgaaata tcggtgcaaa tattgttaaa aagttacgaa caagcggtgt aaagcaagaa       120
     taaagttaag tgctaccgga caaaagtggt tttgtggaga atattacgaa agaaagccaa       180
     aaatctgtga tctcatcggt agaaggaaaa agttaggtta gcgtcggaat gggagcggag       240
     gacgacccac cagacggtgg gggatgtacg tcanatcgac cggactgggg acaagacgga       300
     gaggcggcag ccgccgtagt acgcaacgga atccaagatg acaacaaagc aaaacgagag       360
     gatgtgatct acacccacag agacgccgca ccgtacagag tgtattttga attgaggaat       420
     gacgaaaatg gagcgaagaa aatcaacaag tttgggctgg gctcaacact gcgtagcaac       480
     gacacgttca aacgtcacat cgtcgacatg aagtatgcag gaagacagaa aatcctggtc       540
     ttcctgaaca gctatgtgaa agcgaatcaa ctggtcaaaa gcatcaacga gtcgaacagt       600
     atctacagag cgtacgttcc gcaacacctc gtatgtgtta caggtgttat cgccgggatc       660
     cctgcagaaa ttccgatcga gcaaatcgag gatgatttgg aatgtgatgt gccaatcgtg       720
     ggtgttcgcc ggctcacgcg attcatcgat ggagtgaaga ttccaaccaa ccgcgtcagt       780
     gtaacgttca gaacggacag tctacctgac aaggtcagat tgttctgctg ctcaagtcgt       840
     gtgcaaccat tcgtgcaaaa agtagtcatt tgcctaaact gccttcgtac aaatcatcgc       900
     actgcaaatt gtcgaagtgc taaacgctgc cagcgatgct cagaacgtca cgatgacatt       960
     catgagtacg acagatgtga aaagggtaag aagtgcgtga actgcagaag tacggatcac      1020
     actacaacag atccgaactg ccccgaaatc aaacgacagg ataaaatcaa aaagctgatg      1080
     gcaaagagga acctaacata cgccgaagcg aaagagcaga ttccgattgc aaatcaaaat      1140
     ttgtacgaaa ccctgtatga tgctgaggat tttccgactc cggcggaatc ctttgcggat      1200
     atgacacgcg gcaatttccg ttggaaggac ccgctgcgag aacaatggat gcaggccaac      1260
     aacgagaggg taaaaatgca agctgcagtg aacattggga agtccccaga caaacagccg      1320
     aacaggaaga ggaaaacaac cacgaacacg gacaagacaa ccgagaagcg aaatcacatc      1380
     cttggaaagg aagcagcaga ggccacaaac ggagtggctc taatcaacaa tcaccgcgtc      1440
     gacgaaaagg aaagatggga gaacatgtca aggcaaatca tggaacgagt gcagaaggag      1500
     cagcataatc ttctgatgac tttctacgca gactttatcg ctcagttgga taatgacgaa      1560
     accaccaaag aaaaatttat gacgtgcacc aaaaggcact tcaacttcgc aaagtcagta      1620
     atacaccact gcgacacaaa gtaaggtaag cacttcttca ttatgatagc tcgtaaccag      1680
     tacaagatga aaataaataa aattagcctc tacctcatac caaatttaaa attcggggag      1740
     ttaagtaaaa taaaaatatt acagtgtaac gtgcagagtc tcgataaaaa taaggcagag      1800
     atccacaggg tttttttcgg cgaaggcttc gatgcaagtt tcttatcaga gacatggaca      1860
     aatgcaactc ttgaaacttc taaaaaatac cgtatcgctg gatgccacct aattgcctgt      1920
     tcaagagatg acggctacgg aggtagcgca atcctcttgc ggaacaacca tagctatact      1980
     aaaataaatc tacccgccct gtccaataaa acacaagctg tagcgatttc agtgttatcg      2040
     atgaaattag tcttgttttc tgtgtatgtg agcccatcga tcagcgtacc cgacttcaag      2100
     gaagatctgc agattttgtt cgacactgtg agacagtttg agaacgtaat tataggaggg      2160
     gattttaatg cccatcacgg agactgggga gatgaaaata tggacaggaa aggagacata      2220
     cttgcggaca tgattaatga ctcgagctgc cttcttttga atgatggatc cgctacattt      2280
     gttccagtac ggttaggatg taggtcttcc gcaattgact tgaccatgtg ttccccgcag      2340
     attcantcaa aggctcagtg gcgaacatta gcgtacggaa ttggcagtca ccacttggcg      2400
     atcgagatta caataagcaa cgaagtagat gaacgtccga agtattgcta tgataacaaa      2460
     aaaattgcga cttcaattgc aaatctggag ccgacgaaaa tacgcaatgt agaggattta      2520
     aagtcagcag tgaaccgtat tagaaagtgt aataggagga aagacaatag aacacctaag      2580
     ttttggtggt cggatactgt tgaccaagca tggaaggaaa aaacggaggc aaggcgggtt      2640
     ttcaacagag aatcctctgt tgaaaatcta atcgaattca aacgtaaagc ggccatcttc      2700
     cagaaattga agcgtgcaga aattagaaac caatttgaag agttttcttc tgaaattgga      2760
     ccacaaacta gttccaaaga attgtggaac aaagtaggta gactcgctgg aaagagaata      2820
     aaacgtatcg aaaacaacac nctattagat gactccaatg cagcaaacca atttctggac      2880
     aagcactttg ggccgaatga cgcagaggag tggatcgaac cagtaccagt agcatcgtat      2940
     aatttactag atttttcaaa atgggaagca atcattggta aaaagaagaa aagatctgca      3000
     ccaggggaag acggtattac atatgaagcc ctacgacaac tgagtccagt agtgatacgg      3060
     aatgtgttgg aggatctcaa caggatgtgg attcgtggtt cgctcacaga tgaactcaaa      3120
     actattaaaa tagttgcgat acctaagcca ggtagaaatc aatcatcgcc agaaggaaaa      3180
     cgaccgattt ctcttgtacc cacaatgacc aagattatga atacagcggt gttagacatc      3240
     cttcaaagcc atcttcatca aaaccaaatc ctaccagaga aatcttttgg ttttaggagg      3300
     ggtacttcaa cctcgacagc gatttgtttt gtaataaacg aaataaaaag aaataaaaga      3360
     gaaaaactat taacggcatt gatttgcgtg gatttgtcca atgcgttcaa tgctgttcgt      3420
     acggacattc tggtagaaac gttagctcgt atgagagtta ctgtagaggt cgtaacgtgg      3480
     atatcgtcgt tccttaagaa caggaggata gttttgaatc aacgcaacgg ttcaatttca      3540
     agaagaatct caaatgggct accacaagga gatgttttat ccccaacgtt gttcaatatc      3600
     tacaccgcag tattacacag tatacgcata gaaggagtga cattggtcca atatgcggat      3660
     gactttgaga ttatcgtgac agctaacaac tgggaaacgc tgggcatcag agcgcagcaa      3720
     tacatggata aattcgtgga aacctgcaat gagctaaatt ttgcaataaa ctccgaaaaa      3780
     tctagcgtaa tggtgatgag tgcaagtagc agatccctga atattaaaat caatggcaat      3840
     gtggttgaaa cggtccagaa acaaaattac ctagggatca caatcgatcg gttcttgaca      3900
     ttcggggctc atattaggct tgttcgagaa aaagtccagg agagattatg catgctgaag      3960
     gttctgaatg gcgccaggac aggaacacat ccagacacaa tgctgaaagt ataccaagcc      4020
     cttatccgga gtattatgga atatggttgt tctgcacaca ataatgctag caaaacaaca      4080
     agaaggatcg tagaagtgat aaacaatcaa agcttaagga aagtcactgg atccacaaag      4140
     tctacgccgc taaacactct atctgcgatt agcggtcaac cgccattgaa ttttagacag      4200
     gagatggtca cttgtcggga aattgctcga tgtctatcaa gagataacgt tcttggaaaa      4260
     caattaaaaa atatagaaga tgaggaagaa catggacagg aaaagttctc ttacatggag      4320
     caaatctatc tgcgaaatag aactacattc gatgttctta tgcagaccga acagattgta      4380
     gatgtacacg aagttgaaat aaatccatat ttgaacgacg aaaatcctaa aaaagaccat      4440
     gtcagtcaag taaaactgaa acagctttcc cttggtatga tcaacgggaa atacaggggc      4500
     agaggtagaa tttggactga tgcatctaaa gacggagaga aatgcggaat cggaatattc      4560
     gtagaaggca acaaagcacg ctactactat cggttactac acaacactag catcacatca      4620
     gcagaactca cagctatctg gctggctatg caaatagttg agaaagatca actgatgcac      4680
     tacgttatac taaccgactc taggtcatcc tgccaaattc tcgaaaatgg agtagatagt      4740
     ggtgaaggag aaacggttat cgcagaaata ctacaggtag ctaaaagatg gaaagttaca      4800
     attcagtggg taccaagcca catccagctc gccggtaatg atgttgcaga catgttggcc      4860
     aaggaaggaa cgaaagacga agcaccaata ctcgaaaaca aactattcct caaggatgtt      4920
     tgtctaaaat tcaccaaaca actggaggag aaaactagac gttggtatga ggagctgtct      4980
     caggaaaaag gaaagaagta ctacggaata cgacccgtat ggaatgcaca gccatggttc      5040
     gcaaaactgg atctaaaagg aaaggacatt cgtttactaa atcggctcat gtcggggcac      5100
     gattactcga aatactggtt ggcaaagatg agactaaaag atagcccaga ttgtgacctg      5160
     tgtgatgagc ctgaaactgc cgagcacgta atattacact gcccccgcta tggtatgcag      5220
     cgacatcact acagttttga ttgtcgttat gctaatttag aagaaatttt taaaactggt      5280
     gataaagagc ttttcgaaga agttgcaaac tttgtgagcg aaatgaaact agaattatga      5340
     ataacatgct gaaagcataa aataactggg catatagtct agtaactggc ccaacataca      5400
     gagtttgtca accgacagct cgatacagaa agaagaagaa gaagaaga                   5448
//
ID   Outcast_Ele3 repbase;    DNA;    INV; 5441 BP.
XX
AC   .
XX
DT   15-OCT-2010 (Rel. 15.10, Created)
DT   15-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Outcast clade non-LTR retrotransposon family from Aedes
DE   aegypti.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   Outcast_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5441
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5441
RA   Kojima K.K. and Jurka J.;
RT   "Outcast clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (15-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >96% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           295..1626
FT                 /product="Outcast_Ele3_1p"
FT                 /translation="MAFANSNGPPEGGTHRAQHNLNMDTTLNTPKPKINYQ
FT                 YERTDQGPYRVMVELIDTQNGTLRINKLTLANVLRKMIIYKAHILDMKNIG
FT                 RNKVMVYLNNYQLANRLTSDEDMKAKNYRAYIPRHLISVTGVIAGVPLDIT
FT                 EEEVMEDIICEYPIMQVYRMNRFVNNQKEPTQRMSITFRAAKLPETIKIFH
FT                 CSLRVRAFFKKAVLCLKCLRYNHKQENCKGTRRCQQCSRMHENDEEYQNCQ
FT                 KPQRCLHCRKDHRTSDQACPERARQNNIQAILARTSLTAVEAVEQFPIHTQ
FT                 NYYEALVESAQEPTPAESFAGVTSQLFRPRNNVQRRKREGISPCSRNIGEQ
FT                 VTVYNEKKAKISRDGQHNGVALFNKYKTTEAEKWKTQLRQAQQAKAQEGIN
FT                 IQPTPSSSNSTPATTGAPEIENEDFSMFVSNMINKGRINANSLELNRNQN"
FT   CDS           1670..5257
FT                 /product="Outcast_Ele3_2p"
FT                 /note="endonuclease, reverse transcriptase and
FT                 ribonuclease H."
FT                 /translation="MKILQSNVQSFRKNKEEISRLLSRDNYDVAILSETWS
FT                 KIEEESSRAYNLSGYHKVLNSRADGYGGIGIYIRNHLNFQQIQIXSQADLI
FT                 QVAAVKILRTNTVVAGIYVAPSITTNQFEAELHAIVMQLNRYPKVIFGGDV
FT                 NCHHFARGDEKCDPKGTLLMDIINGSNLVLLNTGEKTFIPLELGRRSTAID
FT                 ISCCSTTMFGELEWKVKPETIGGSEHQLIEISGKEKVEYTRYFVNHKKIKE
FT                 EIEKFSCEEVRSIDELQERIQLSYQKNRKKSKHTPKVWWSDTVEEAWKNKM
FT                 EAIRKFNTDSTIENAIMVRRTKAIFLRRKKEGIRKQIEELASTIDPQTSSV
FT                 VIWDKIGRITGKRVNRKVNNPVQEDSQLAEKFFDIHFGKTDVDIDAPLSYG
FT                 PLCQYNLMDREKWDRILSRKNDKSAPSNDKITYGMLKILKPDVTSMIIRQI
FT                 NDMFIAGALTYTLKEIRVVAIPKQGKDQSTVEGKRPISLIPTITKVTNTAV
FT                 LDKIQSHLYKTRNLPELSFGFRKNMSTSTCLNFVVDSIKHNKREGLITATV
FT                 FIDLSNAYNSVKADILEAIMYKLRFPREVVTWVVSFMKNRKVTMQVGTQTV
FT                 SRMVSNGLPQGDVMSPTLFNIYTSELHELTNGEVTLVQFADDFSLIITGKN
FT                 VEEVRRKTQQALDTFQERTKQLELDINPAKTKVVLFHGGNHTFDVKLDGIT
FT                 VELVKSHKYLGLIIDRFLSFGEQTRTVKKKIDERLKMLKIISSVRHGGHPQ
FT                 TMNMLFTALIRNYVEYGCSIMNNASKTNKQALQVAINGCLRKVTGCSKTTP
FT                 LNTLLAIAAQEPYGIRSKFVTAKEIAKCLAYQGPVYEQLSKLGVDVLDRDK
FT                 LSYSERLYLEHVQMFKNISPIVYVELTDTKVNINSSVGTKFKKENVNPKVL
FT                 KQMVLCLLNGKYRNLTKVYTDASKHNSRCGIGVYMEPGNRRLTWKLKHETS
FT                 IMTAEVIALSMATKEILKTDLRDVVILTDSLSSCMVLENSQYQEWRSAMID
FT                 EILQACLSRNITIQWIPSHIDLEGNDIADYLAKKGTEHSNEIDHQVLLKDA
FT                 FLYFQNLKEEETDKWYKDYALEKGQKYYAIQQSFPNKPWYHQKQLDNFETR
FT                 TLNRIMAGHDYSKYWLHKMKIEDDPNCEICDVPETAEHIILHCVRYGQSRM
FT                 QFSFDCKFRNMKEVLETKDVNIFKEIVNFLKQTKNKI"
XX
SQ   Sequence 5441 BP; 2006 A; 1099 C; 1175 G; 1160 T; 1 other;
     cattccagtt caagcgtcgg atacgcgcgc gtgtgtttcc aagcgaaggc aaattttcga        60
     gcgttttttc caaataaagt tccggaaaag ttatcacaac ttgaaatttg aagagaaata       120
     acattttttg aagttaagtg aataagtgcg agagaaaaaa aactaaataa agtagtgaaa       180
     aaagcatatt ttgatcgagc cgaaaaggcg aaagggacgc cattgtgcta gtgaggttac       240
     ataaagaaaa aaagaaaatg gcgacatcta agagagaaga agaataagag aagaatggct       300
     ttcgcaaaca gtaatgggcc tcccgaaggg ggcacacatc gagcacaaca taacctcaac       360
     atggacacaa ctctaaacac accgaaaccg aaaattaact accagtacga gcgaacggat       420
     caaggcccat atcgagtgat ggttgaactc atcgataccc aaaatggaac cctcagaatc       480
     aacaagctca cgctagcaaa tgttctgcgt aagatgatta tctacaaggc tcatatcttg       540
     gatatgaaaa atatcggtcg caacaaggta atggtgtacc ttaacaacta ccagttggca       600
     aaccgcctta ccagtgatga agacatgaaa gcgaagaatt atcgtgctta catcccacgt       660
     cacctgattt cggttaccgg ggtgattgca ggagtccctt tggacataac cgaggaagag       720
     gtcatggaag acataatctg cgaatacccg atcatgcagg tatacagaat gaaccgtttc       780
     gttaacaatc aaaaagaacc tacgcaaagg atgagtatca ccttcagagc ggcgaaatta       840
     ccggaaacca tcaaaatctt ccactgctct ctcagagtga gggctttctt caagaaagcg       900
     gttctatgtt tgaagtgcct acgctacaat cacaagcaag aaaattgcaa gggaacgcgc       960
     agatgtcaac aatgctccag gatgcacgaa aacgacgaag agtaccaaaa ctgccaaaaa      1020
     ccacagcgat gtctacactg cagaaaggat cacagaacat cagatcaagc gtgtccagaa      1080
     cgagcccgtc aaaataacat tcaagccatt ttggctcgca ccagcttgac agcggttgaa      1140
     gcagtcgaac aattcccgat tcatacgcag aactactatg aagccttagt agagagtgct      1200
     caggaaccga cgccagcaga atcctttgcc ggtgttacat cacagctgtt cagaccacga      1260
     aacaatgtgc aacgacggaa acgagaagga atcagcccat gctcaagaaa tattggagaa      1320
     caggtgactg tatacaacga gaaaaaagcg aagatatcac gagatggcca gcataacgga      1380
     gttgcactgt tcaataaata caaaacaacg gaagcagaga aatggaaaac acaattacgt      1440
     caagcacaac aagcgaaagc ccaagaagga atcaacattc agcccacccc ctcgtcgagt      1500
     aacagtaccc cggcgacgac tggagctcca gaaatagaaa atgaagactt ctcgatgttc      1560
     gtctcgaaca tgataaataa aggtaggatc aatgctaata gtttggaatt aaatagaaat      1620
     caaaactaga taaataaaga aaacattaaa cttatcaatg taaacaaata tgaaaatttt      1680
     gcagtcaaat gtacaaagtt tcaggaaaaa taaagaagaa atctctagat tactaagtcg      1740
     ggataattat gatgtagcaa ttttgtcgga aacgtggtca aaaattgagg aagaatcatc      1800
     cagagcgtac aacttaagcg gataccataa agtcctaaat agccgtgcgg acggatatgg      1860
     aggtataggt atctacatac gaaatcattt gaatttccaa caaatccaga tcakaagtca      1920
     agcggatctc atccaggtag cagcagtcaa aatattgcgg acgaacacag ttgtagccgg      1980
     aatctacgtg gctccgtcta tcacaactaa ccagttcgaa gcagagttac atgcaattgt      2040
     gatgcagttg aacaggtacc ccaaagtaat ttttggagga gatgtaaatt gccaccattt      2100
     tgcacggggc gatgagaaat gtgatccaaa gggaacattg ctgatggaca taatcaacgg      2160
     atccaatctg gttctactga atactggaga aaaaacgttt attcctttgg aactaggtag      2220
     gaggtctact gctatcgata tatcctgctg ctcaacgaca atgtttggag aactcgaatg      2280
     gaaggtgaaa ccagaaacga ttggaggcag cgaacatcaa ctgattgaaa tatctggaaa      2340
     ggagaaagtc gagtacacga ggtacttcgt caaccacaaa aaaattaagg aggaaataga      2400
     aaagttcagt tgtgaagaag tcagaagcat cgatgaattg caggagagga tacaactgag      2460
     ctaccaaaaa aataggaaaa aaagtaaaca tacaccgaaa gtatggtgga gcgacacggt      2520
     agaagaagcc tggaagaata aaatggaagc catcaggaaa ttcaacacag acagcactat      2580
     agaaaatgca atcatggtga ggcgaaccaa agcgattttc ctacgaagga aaaaagaggg      2640
     aatacgaaaa cagatcgaag agctggcatc gactatcgac ccgcagacca gctctgtcgt      2700
     aatatgggac aaaataggaa gaattaccgg aaagagagtc aaccgtaaag tcaacaaccc      2760
     tgtacaggag gacagtcaac tagcagaaaa gtttttcgat attcatttcg gaaaaacgga      2820
     tgtagatatt gatgcgcctt tgtcatacgg accattatgc cagtacaacc tcatggatag      2880
     agaaaaatgg gatagaatac tttcgcggaa aaacgataaa tcagccccgt cgaatgacaa      2940
     aatcacgtat ggcatgctta aaatccttaa gccagatgtg acgagcatga taatcagaca      3000
     gatcaatgat atgttcattg ccggtgcatt gacatatacg ctcaaagaga taagagtcgt      3060
     agctattcct aaacaaggaa aggatcagtc cacagttgaa ggtaagcgac cgatttcatt      3120
     gattcccacc attacgaaag taacaaatac tgcggtatta gataaaatac aatcacactt      3180
     gtacaaaact agaaatctcc cagaactttc ctttggattt cgcaagaata tgtccacatc      3240
     aacctgtcta aattttgtgg ttgactcaat aaagcacaat aagagagaag ggttgataac      3300
     agccactgtg ttcatcgact taagcaacgc ctataattca gttaaagccg atatccttga      3360
     agcaattatg tataagcttc gatttccacg agaagttgtt acgtgggtgg tttcattcat      3420
     gaaaaacagg aaagtgacga tgcaagttgg aacccaaaca gtatcaagaa tggtgagtaa      3480
     cggcctcccc caaggggacg tcatgtcacc gacacttttc aacatataca caagcgaatt      3540
     gcatgaattg accaatggag aggtaacgtt ggtacaattt gccgacgatt tctcacttat      3600
     aataaccgga aaaaatgttg aagaggtaag aagaaagacg caacaggcac tcgatacgtt      3660
     ccaggaacga acgaaacaat tagaactaga catcaaccct gctaagacga aagttgtgct      3720
     gttccacgga gggaaccaca cgtttgatgt gaaacttgat gggatcacgg tagagcttgt      3780
     taaaagccac aaatatcttg gactgataat tgaccgcttc ctcagctttg gtgaacaaac      3840
     caggacagtc aaaaagaaaa tagatgaacg cctcaaaatg ctaaaaataa tatcgagtgt      3900
     gagacacgga ggacaccccc aaactatgaa catgctcttc accgctttaa tcaggaacta      3960
     cgttgaatac gggtgctcaa taatgaataa tgccagcaaa acgaacaaac aagccctcca      4020
     ggtagcaatc aacggttgtc tgcggaaggt aaccggttgc agcaagacaa cacctctgaa      4080
     tacgctgttg gctatagcag cacaggaacc atatggaatt cgatcgaaat ttgtaacagc      4140
     gaaggagatc gccaaatgct tggcctatca aggaccggta tacgaacagc tgagtaaact      4200
     cggagtagac gtcttggaca gagataagct atcgtattca gaaagactat atctagaaca      4260
     tgttcaaatg tttaaaaaca ttagtccgat agtttacgtg gaactaaccg acacaaaggt      4320
     taacatcaac tcgagtgttg gaacaaagtt caaaaaagag aacgttaacc ccaaggttct      4380
     aaagcaaatg gttctgtgtc tcctgaatgg aaagtacaga aacctaacta aagtgtacac      4440
     agacgcatcg aaacacaaca gccgttgtgg aattggagtg tatatggagc caggcaatag      4500
     aagattaact tggaagctga aacacgaaac atcgataatg actgcggaag tcatagcact      4560
     cagcatggct actaaggaaa tcttgaagac tgatctacgc gacgtagtaa tactcaccga      4620
     ctcactatca tcgtgcatgg tactggaaaa cagtcagtac caggaatgga gaagcgctat      4680
     gatcgatgaa atactacaag catgtttgtc ccgcaacatc actatacagt ggatacctag      4740
     ccatatcgat ctggaaggaa atgacatcgc tgactacctg gcgaaaaaag gaacggaaca      4800
     ttccaacgag atagatcatc aagtcctact taaggatgcc ttcctttatt tccaaaacct      4860
     gaaagaggaa gagacggaca aatggtataa agattacgct cttgaaaaag gccaaaaata      4920
     ctacgctata caacaatcgt ttcctaataa accatggtac caccaaaaac aactcgacaa      4980
     tttcgaaaca cgaacactca accgaataat ggctggtcac gattacagca agtactggct      5040
     acataaaatg aaaatcgaag acgatcccaa ctgtgaaata tgcgacgtcc cggaaacggc      5100
     tgaacatatt atactgcact gtgtacgata cggacagagc agaatgcaat tttcctttga      5160
     ctgcaaattt agaaacatga aagaagtact agagacaaaa gatgtaaata ttttcaaaga      5220
     aatcgtaaat ttcctgaaac aaacgaaaaa caaaatataa accaattcca aacaaaaaga      5280
     gcattgaaac gttgtgtaac gagacgctag gtcgactttg tcgactcacc ccgccgtaac      5340
     gtcaaaatgg ggtgggctgt caacaacgaa aaacagctgg atatatggtc cttgccacca      5400
     atccaagtgt ttacactaca ccagaagaga agaagaagaa g                          5441
//
ID   P-1N1_DBp   repbase;    DNA;    INV; 1431 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-1_DBp;
KW   P-1N1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1431
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 598-598 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~580-bp TIRs. 7-bp TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1431 BP; 441 A; 248 C; 260 G; 480 T; 2 other;
     cactaaccat acagcatata gacaacccat ttcatacaac gaaaatggac gcgaaaattt        60
     cttgcgacag gccccagcag gccccagagc ggatttctta cgctctctta cgctcatcgt       120
     tcgttcatct tacgctcatt ctcgcattaa atgttttctg tttctcagtc tctaaacgga       180
     gcgcgatgaa gaaggttggc ctgcgcttcg gttgatcttc gtatgtatgc gtgtcacaca       240
     ttcacataca tgggtgtatg tgtgcgtgcg atttcgtttc gaagccagcg cacaaaattt       300
     kgatttttct tacttttcag gcttgctacc ctaacmaaat tcgggtattc gttatttgat       360
     gaaatgacga aagaaattat attatttttt atattatatt ttttattatt tcagcataca       420
     tttttaattt atttaggaat aagattaagt gttagtagta aaatgttttc tgtatatata       480
     tttttacgaa tcattaaaaa tcaatatact gagaaagtgt cagagtatat ttcagtcgga       540
     gtcacttaaa acgccgattg cttttaagtt tttgttgttc tgcaagaggc ttgtgcatgc       600
     ctactctaac gatggaatga tttttagggg agggtgaaga cacgaaaaca gctgatggac       660
     ttgtttacct tttttgttta caatttttca ggcacttgtt attattttgg gttattgtga       720
     gatttaatta aattattgtc gttaatttaa taatttcctt atatattttg gaactttaaa       780
     aaagtcgccg ctcgaatttg ttacagatat atatacatat acatatttat atatttacat       840
     tggttttctg atacctcttg cagaacaaca aaaacttaaa agcaatcggc gttttaagtg       900
     actccgactg aaatatactc tgacactttc tcagtatatt gatttttaat gattcgtaaa       960
     aatatatata cagaaaacat tttactacta acacttaatc ttattcctaa ataaattaaa      1020
     aatgtatgct gaaataataa aaaaaataga tataatttct ttcgtcattt catcaaataa      1080
     cgaatacccg aattttgtta gggtagcaag cctgaaaagt aagaaaaatc caaattttgt      1140
     gcgctggctt cgaaacgaaa tcgcacgcac acatacaccc atgtatgtga atgtgtgaca      1200
     cgcatacata caaagatcaa ccgaagcgca ggccaacctt cttcatcgcg ctccgtttag      1260
     agactgagaa acagaaaaca tttaatgcga gaatgagcgt aagatgaacg aacgatgagc      1320
     gtaagagagc gtaagaaatc cgctctgggg cctgctgggg cctgtcgcaa gaaattttcg      1380
     cgtccatttt cgttgtatga aatgggttgt ctatatgctg tatggttagt g               1431
//
ID   P-1N1_DSer  repbase;    DNA;    INV; 1805 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   P-1N1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1805
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1840-1840 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 7-bp TSDs. 6-bp TIRs.
XX
SQ   Sequence 1805 BP; 592 A; 304 C; 271 G; 638 T; 0 other;
     caaagattgt ataagtataa gattagtaac gccatacgat ttttttgcac acgatttttt        60
     cgtgctggct tttgaactgg ctccaggctc tctcgcactt cgttcaaaag ccagcgagag       120
     agcgctctag agccagccgc tctctcgtgc tggctctagc cgctctctcg tgctggctct       180
     agactctaga gtctagagcc agcagcactc tcacgcatac agcaatgttt tcgtgatggc       240
     tctagagcca gcagctctct catacgcata cagcaacatg gcgtgcctca aaataccgat       300
     ttcgcggttg aatttattac aaatttgtac atttatttta ttttattttt ataatttatg       360
     tatatattta tttatatata tatatatata tatatatata tataccgcat atatataaat       420
     aaatattatt tctaagtcaa ttgaattgaa taattataaa tacatatata aatatgaatt       480
     taaatggtat ttttttgtta ttataataat aatatttaat atatgggcaa ttctctggtg       540
     tcgaatgcga cattcgtacg cattcaaact aaaaaaacac atgtgccaag actttatttt       600
     aattttataa aaattgaaac gtatagctct tggttagcac tataattggt gctaaggtcg       660
     attttgaacc cttgtttgtt ttcaagatat tcactaaaat gtactgcgtt cgcacgcgac       720
     aaaaatagaa gttacatttg caaaaaacaa gtttaagctc tgatttcagc gaaacgtgat       780
     gaaaaattgt agtaaaataa attttaatga attacgcaat gaattctctt cataatttgt       840
     tttgtttgat tttaaaatat taagtagtta ttttttaaat tcaattttag tcccggcgcc       900
     gcgcatgtcg cacgcgacag tttggaaagc gataattcaa actaaaattg tacgaatatt       960
     gatgatcgca tatgtccttt tccacttttt atttactctt tgggttttct atgtgatatt      1020
     agaaagcaaa agtcaaagca aaatcccttt gtttaataga ttgacatcaa aacaaaacat      1080
     gccatttttt atgccttttt ttgataaaaa caacattttt tgcatttgcg cgtgtttgac      1140
     atcgattttt ttgaaactta ttttagaaaa tgaaaaattc tcttagtctt gatcatcctg      1200
     accaattttt ttataatcat gttaaaaata ctcgttttta agcaatttta agtttttggc      1260
     cgcggtggac ctttctggag aattgcccat atgtatatat ttaataattc aaatatataa      1320
     tatacataca tatttaaata ttggaattaa acgaagtatt tttatttttt gcattactta      1380
     taaaaataat ataattaaaa ataaagaaaa aaataacaat ataaagggac tcaagcactt      1440
     taaaaatgta aacaaactaa aatcaaaaca aacaaacaca tcgatatgca catgtataca      1500
     tcagctgttt ttgctgccgt tctcgtcccc ctctctacct aacaagcggt cttcagccaa      1560
     aatataaaat tttaattttt cgtcgttggg catgcgaaca gaagcacaca catattcacg      1620
     cacacatgcg cacttttttg ttctgtgttt actcatacat gcaaacgcat tctattttta      1680
     gatatttacg ctctcaactt tgtgagagca gggagagcgc cattgtcgtt tgaatcaaaa      1740
     aattagcctc atattgcaaa acgaatgtat ggccgtgagg catcttataa gttataaagt      1800
     ctttg                                                                  1805
//
ID   P-1N1_DSuz  repbase;    DNA;    INV; 1557 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   09-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1557
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 101-101 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. 7-bp TSDs.
XX
SQ   Sequence 1557 BP; 614 A; 230 C; 260 G; 453 T; 0 other;
     caaagaccat agaataacaa gatgcgtaac agccatacaa ctgaatgtac ggcaaaattt        60
     ttggtgtgga ttttcgatgt ggattttcga tcttgcttgt gtgcgttgtc cgtgtaaagc       120
     tctttggttg tgttggtgaa tcatttcgtg tggtctgctg caataagggc tcaatgtcgc       180
     atttgactaa cgcaagttgt caaaggcctg taggccaggg gtctagtcgc tcaaccgcga       240
     gaattgcagg tcggagttca accccggcaa aagatgtgaa gcgattattt taaaacaggg       300
     agaaatgtta aattcgcctt ccgaaatttt tattgcagaa aaaaatttct gtaacgattc       360
     ggactttgga aagttaagtg ctctttcaga tatatttttt aatgtatgta aaatacatat       420
     aaaggttttt gaaaacattt ttaatactaa taagaaacaa gaacacattt aacagtttat       480
     aatgagtaaa cgtgtaacgt gtactggaga aagccatttt tcatcgtggt ttgatgaaaa       540
     tgatgagtgc tattcacata aaatgctaat gttagataaa ttaattagag ttttgctgta       600
     caaacattgt aagtggctag actccccaga caaatgtaaa agtagcgata agcttaatat       660
     actgcgtcat aaataaataa atatctgggg atctttgaac agtaaagctg aaatctattt       720
     atcgaacatt tgcattttat atggaaagca ctcaccatat tcatcaaaat ataatgaaaa       780
     atccttttct cgagtacata ctttgattca aagtgaatta cttattgtgt tcatgttttt       840
     attgttatta gatattttat taaaaccttt aatatgtaat ttacacaaaa taaaatatat       900
     ctataggagc gattaattcc taaagtccca gttggtacat ctaaatgttt taaaaaaact       960
     aaaaaaaaaa aggaagaaaa actaaaaaaa ataaaaaaaa accaaaaaat aaatttaaaa      1020
     aaaactaaga aatctatttg tgaaaaacta aaaacaataa aaaaaacaaa aacgaattta      1080
     aaaaaactaa aaaaactatc aaaaatatta aaaaaaaaaa ttgtcaaaaa agtacagcta      1140
     aaaaaatatt aaaataaaaa aaaaaatata aaaaaatata aaaaaatata aaaaaatatt      1200
     aagttgaatc cagcctcaga gtggactcga acatcgaact caaatccatt atccacgggc      1260
     caccaacata cgcagagcgc aacagccctc ttataattcg catgagcaat acgtctttta      1320
     gatcgattcc ttttcgtcaa cataattcaa gaatcgacaa atgagacaaa aattgaattt      1380
     tgactacacg cgaagtgtag tgagcgagat agcaagagag agggaaagag aaggaagcaa      1440
     agcaacggca ttctaaaaat agattcctat acgtgtaagg gttgctttgc aaaaattagc      1500
     ccgcctgtgt acattttctt actcctagtt acgcatcttg ttattctatg gtctttg         1557
//
ID   P-1N1_DTa   repbase;    DNA;    INV; 1433 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1N1_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1433
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6157-6157 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 7-bp TSDs.
XX
SQ   Sequence 1433 BP; 491 A; 223 C; 241 G; 478 T; 0 other;
     caaagagaat acattatata gagagggcat aactctgact ttctgttcaa actgttgtcg        60
     gcaaggggaa aagggggaaa gagcttgttc tatttttaga attcgtttat tgagtacaca       120
     atgcataagt gtaagtgggc tttgtgtgta tgtgtgcgag aacgtggcaa cacattttcg       180
     agaaaatttc atttttgtaa tttctataat ctagggccaa caacatttaa aagtcgaaaa       240
     gggttttctg tccaacattt tcaactcggt ctatggtcgt gctggttaaa gcgttgatca       300
     gcgatgttga tgcgagttcg atccccgcaa ggggcagacg ttttctaata ttgttttttt       360
     ctttttttga tgtctcgaaa tatatatact tttttttatt attttagtta aaagctaaac       420
     aattttttta tatttctttt cttgtagatt aacatcttaa gattatacaa aaaagtttta       480
     agtcaatcta aaagaacttt ggaagctagg atgtaattag tactagtaaa atttttctaa       540
     aaaaaataat ttttgatttt gcacggctta ataaaatatt taaagtaaaa aaaaaaataa       600
     aacttcccag ggcgggtttt ttctattctt aaacgaaatg taatttttgg cggagataca       660
     gtgaacaccg caaaacgtct ttttaaagtg ctctatacgt gttttacata tgacatgttt       720
     ttctcgaaac cacgttttta aaagtccgtg ttcatcggca tttctaaacg gctcaaccga       780
     tcgtttttaa atttgtcgca tatttttctg cataaaaaaa cccgccccca gggaatcgtt       840
     ttttttttaa actttaaaaa tttttttgtt aagcccaaat tcaaattttt tagctgaaaa       900
     acgcattctt aactttggaa aatcaaaaaa aaattcttaa aattaaaaaa gtaaagaacg       960
     ggcttcctaa gggctggttt ttttttaatt cttaagcgaa atgtaaaaac aaatgtaaaa      1020
     atggaaatcc aataattttt ggcggtggta aagaaattat tcgatgttat ttaaataaca      1080
     ctcaataata tacaaaaggt ttgaattaaa tccatcttaa cagtttttat agaaaaaatc      1140
     aacaaaaaaa ttacaaaata gaaaaaaaaa caaaatactc ttaaaaaaca aaaaaaaaaa      1200
     accccgcaag aaattgaaat tctacaacgg gattcgatcc ccgtaccgct tagattggta      1260
     gtcagatgtc ttatccactg ggccaaatgg ctagcagtgc tgcggccgaa tagattccaa      1320
     gtagaatcga gcagtgcggg ttctactgtt aaaatgcggg ttccaccgct agaacccgcc      1380
     atacgacaga ctcttttgta tgacatgtcc tctctatata tttatactct ttg             1433
//
ID   P-1N1_FoCa  repbase;    DNA;    INV; 2791 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-1_FoCa;
KW   P-1N1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2791
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2486-2486 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. 8-bp TSDs. No clear TIRs. It is an
CC   internally deleted derivative of P-1_FoCa.
XX
SQ   Sequence 2791 BP; 858 A; 468 C; 532 G; 932 T; 1 other;
     caatgcctcg taacaccata gtcaatttgg agatgaaata aaagtgaatg aaggtgaggc        60
     ctctcgcgga gacaggccat aagtagtagc tcctctcata tcatcatcat caaatccatc       120
     atcatcatca cttgtttaca atataaaagt ctcgcaaata attgcaaatt atattttgaa       180
     atactgaaaa aagtgtatct ggccatcgca gcagtacaca gtaagtacat aggtaatttt       240
     ttatattttt ttcatattga attgattcat tgcgtacatt tatttgaata tttattattt       300
     gatggtgtgc atttgtaagt ggaaggaaag tcgaggttgt ccattcagta cggtgcgatt       360
     ttacgttttt aaaatttagt ttaaaacagt tttcaatgag taaaaactag agtcttttct       420
     gtacaccgta atggatggat ggcctcgcaa gcgagctagg atacggccgg tcttacggag       480
     cagggaccga attcagtgct aggttaccat ggttaccaag gtgcatattg actttaagcc       540
     cagctaagac taattttacc tacgtttcaa ctggaattta atttcatgaa gccatttcta       600
     ttattttacg ctacaaattc attgacaccg aaagtaagca ttatcaccca ttttggaaaa       660
     ataagatcga attgtaatta aaattccgaa gtctttttag accaaagtag gatacaatct       720
     ctaattttac gcgaatgtag ttgaataaac aaataagttt cataaatctt aaacgtctaa       780
     atcataggtc caacgtgaac aatggcctgt gtacagaatg aaatacgtgg gaattagaga       840
     gtataagagg tcaggtaaac gtgcggtgta cgagaaaagg ctgatagata gtgattcaag       900
     acgggctgca ttaggaatga tgatatccat caagtcagtc attgctatta gcaaagctct       960
     tctgatcaga gagtttaatc ctttcaaatt cgtgctgacg tatcggtttt gccaagatcc      1020
     tttagaactt ttttttaata ccgtgagggg aagattaggt aataacaaca atccaactgt      1080
     ggtcgagttt aggaacatta tgaaatccat ctggcaccaa aatctcctca agtccaccaa      1140
     cacgggtaac tgcattgcgc agattgacga aggtgaagtt cctggtggta tgttgcctct      1200
     caaacgtgtt cggaaattga aggtgctcga tatggatgac attgatgcgt tggacattat      1260
     agatcttagc gccctctctg atccacatta ttcagatttt tataggaatt gtctagctta      1320
     tattagcggg aatgtggtca gagtagttgg gacgaagttg aagtgtgaga tttgtgccaa      1380
     tcacttctta acacagacga tgatcttctt ccttctcact ttgctaagct aattgaggct      1440
     aaggatcgcg gaggcttatt cacccctggt cattccgttt tccgtatagt tgagctgact      1500
     gatgcatgtt atcggcaaat ttgcaaaact tctggtggtt taatgaaggt atctaatcta      1560
     gaccgtagga tttctatgat ggttactgca cgatgcttag aaaccacaat tttcccacat      1620
     ctgacgcatc acgtagttga ttttgatcca ttaactgaaa ctagtcattt gtctgatctc      1680
     atttctcgaa tttcgatgca ttttttgaaa attcgcttat ttgatcatgg aaataggttt      1740
     caaaagatgc gagaaatttc aacttctgta cggcacaaat ttggcaaatt aacaatattt      1800
     accgaagcgc attagaatag gtttagaatt atcttacaga tgctccttak aatttttaag      1860
     aatatatttt aagtatttac aactatttgg aattatttaa atgtatttta agttgtattt      1920
     agcattattt gggattacct agtttaattg aagttgtctt tagaattatg ttagagttac      1980
     aatagttaaa aattgtgtaa acattatatt agaataattt actgattatt tttaaattgt      2040
     tctacgtgac tgattcacgt taagatgcct taagagactt gtatctcact aaaaattgtt      2100
     aatcaataaa taaatgctgt ttcattgttg gactgtggat tctgattata taacttcact      2160
     atttgcacat aaaaaatatt aaatagaatg cataatgttt tattctcaca ggtcaccatg      2220
     cctttgcatc ccggcgattt ggaaattgcg gaggcaattt ttcgattgtt cgatcataaa      2280
     ctgatcgatt acgtcgtgcg tcaaaattac aaattacatg taaatcataa tgcataatag      2340
     attgttatta atgaaatttt tgtgtacagg tcctgacgga gcgggaatag cgagttgccc      2400
     tccaggcaat tccattgcac ctccgagaga tggcgagggt ttggtgctac gcatctattt      2460
     gccactccaa gcgttataac gcaacttcag cttttaaaag cttgtgtact aatcgtttgt      2520
     acatgagatt agcgaagttg caaaaatttc tgcgtattta tttaattaat gttaattttt      2580
     tttaagaaat attattaaat aagttccaaa attaatcaag ttaattatat gatgatttta      2640
     ttgcacctcg tactgaattt gtcgtaagct ggtcttaact aagtgatttt caactcgttt      2700
     actgaattca gccccgaata caggccaaat ccgacatgtt gctctggcaa caaagtactg      2760
     aagccgattt atcccttcct ttagatccat g                                     2791
//
ID   P-1_AAe     repbase;    DNA;    INV; 3131 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A P DNA transposon family from Aedes aegypti.
XX
KW   P; DNA transposon; Transposable Element; nonautonomous; P-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3131
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1288-1288 (2011).
XX
DR   [2] (Consensus)
XX
CC   There are 3 copies with >95% identity. Both termini are
CC   uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..2239
FT                 /product="P-1_AAe_1p"
FT                 /note="transposase."
FT                 /translation="METSVKKENLKLKKLLNQEKRKTKIYSSQLKKSKALN
FT                 SRLAEIFSKGQLRKLTDPLKRRIQWSPDDISRAISLHAAGAKAYRLLLSRG
FT                 YPLPAVSTLKKWAGKVKLTPGVLKPVLNLLQNSKFNEKERACVLSFDEMKI
FT                 KSCYEYDRTSDKVLKPTKYVQVAMIRGLYKNXKQVIYYNFDTAMTATIIKD
FT                 IIEKLXNIKFRVVAIVCDMGPTNRKLWKDFEISCEKPFFTVDDQKVFTFAD
FT                 TPHLMKLVRNHFLDSGYSWQKEETTHLITXRPVVDLVNLQRSELKICHKIT
FT                 LTHLDVKDAARQKVKYAVQLLSNSAAQGIKRAFSLGLISSPXALITSSFLK
FT                 NMNDWFDIFNSSAASKGLRERLKAFDHSNTVHQSIIHESNEMISQLRVPNR
FT                 RTLLPCQKAILVNNAALIGLSVFLKTIYGXSYLLTRRLQQDDLERFFGTIR
FT                 SKGGLHDHPTALEFTYRLRNSILGNIIDYFILIKFVLLCVKLWLSIPRYVM
FT                 IKIYFFQIGRSDASQQVNNSNVEQEQEEPYEELQFTGSLLKDISPGQTDFF
FT                 QAEDQDYEMEENMDESECSMEYSELEEDALEYIAGYIIKKLKLRIPPPDKS
FT                 AFTWVDQLSEGGLTKPTFDFVTQIMLLDKIFKQQHGETFNFNVKAVESCID
FT                 ASENIGLSVEIKKLFFRTRLYIRIRNLNKKNDNIQKTKKRKMKKIVN"
XX
SQ   Sequence 3131 BP; 1028 A; 605 C; 578 G; 899 T; 21 other;
     tcccatgata aagagtcaat caatcaatca awattagaat cgaggtatac ctgtagacgt        60
     tttacgtggt ctatcgctgt ggttgttcga ttttgtttac tcagatggta ctttactaga       120
     caaataacaa aaaaaaactt ctagaaaacg catggaaact tctgtgaaga aggaaaattt       180
     aaaactgaag aagttactta atcaagaaaa acgaaaaacc aaaatatatt cctcgcagct       240
     caaaaagtca aaagcattga attctcgtct tgccgagatt ttctcaaagg gtcagctgcg       300
     gaaacttacg gatccactca aacgtcgaat tcagtggtct cctgatgaca tatctcgagc       360
     gatatcwctg catgctgctg gagctaaagc atatcggtta ctactgtcta gagggtatcc       420
     tttgccagca gtttctacgc tgaagaaatg ggctggaaaa gttaaactta cacctggagt       480
     tctcaaaccg gttttaaacc ttcttcaaaa tagtaaattc aacgaaaagg agcgtgcatg       540
     tgttctctct tttgatgaga tgaaaatcaa gtcatgttat gagtacgacc gcacttccga       600
     caaagttcta aaaccaacta agtacgtgca agttgcaatg atacgaggac tatacaaaaa       660
     twggaaacag gtcatatact ataatttcga taccgccatg acagcgacta ttataaaaga       720
     tattatcgaa aaactgaawa atatcaaatt tcgcgtagtc gcaatcgtat gtgatatggg       780
     gccaaccaac agaaaacttt ggaaagattt tgagatcagc tgtgaaaaac cwtttttcac       840
     cgttgatgac cagaaggttt tcacttttgc ggatacgcct cacctcatga aacttgtacg       900
     taatcatttt ctggattctg gttactcatg gcaaaaggaa gaaacgactc atcttatcac       960
     ctmaaggccg gttgttgatt tggtcaattt gcagaggagt gaactcaaga tttgtcacaa      1020
     aatcactttg acccatctag acgttaaaga tgcagctcgt cagaaagtga aatacgctgt      1080
     gcaattgctg tccaactctg ctgcacaggg catcaaaagg gccttcagcc ttggattgat      1140
     ttcttcgcca gawgctttga taactagttc atttttgaaa aatatgaacg attggtttga      1200
     tatcttcaat tcgtcagcgg catcgaaagg actacgagaa cggctcaaag catttgacca      1260
     tagtaatacg gtgcaccagt ccataattca tgaatccaat gaaatgatct cacagcttcg      1320
     tgttccaaat agaagaactc twttgccgtg ccaaaaagca atcctcgtaa ataatgcagc      1380
     actcatagga ctttcagtat ttttaaaaac tatttacggw wattcgtatc tattgacacg      1440
     gagattacaa caagatgacc tagagcgctt ctttgggact attcggtcaa aaggaggatt      1500
     gcacgaccat cccaccgcat tggaattcac ttacagattg cgaaacagca tattaggtaa      1560
     tattatagat tactttatac ttattaaatt tgtgttgtta tgtgttaaac tttggttatc      1620
     tataccacgc tacgtgatga tcaaaattta tttcttccaa ataggacgat ctgatgcatc      1680
     gcaacaagtg aataacagta acgtagagca ggaacaagaa gaaccgtatg aggagcttca      1740
     atttacggga agcttgctaa aagacatatc tccagggcaa acagactttt tccaagccga      1800
     agatcaagat tatgaaatgg aggagaatat ggatgaatcc gagtgttcca tggaatattc      1860
     cgagttggaa gaggatgctc tggagtatat tgctggatat atcataaaaa agttaaagtt      1920
     acggatacca ccaccagata aatcagcatt cacatgggtg gatcagctct ctgagggtgg      1980
     gttgacaaaa cccacttttg attttgtaac acaaataatg ttacttgata agatatttaa      2040
     acagcaacat ggcgaaacat tcaactttaa cgtgaaagct gttgaatctt gtattgatgc      2100
     ttccgagaat attgggctgt ctgtggaaat caaaaaactc tttttcagaa cacgattgta      2160
     catccgaatc agaaatctga acaaaaagaa tgataacatc cagaagacta aaaagagaaa      2220
     aatgaagaag atcgtgaatt aaatgtatca ctttgttgtt aagttatata cataaatata      2280
     tagcaaaatt ttcaacaata ttctcattcg atgttttatg tttccaaaat tttgtatcca      2340
     tggcttgaac aatgatagtc cttgatctgc tgaacaactt cgtcgaagat gccatctttc      2400
     taaaaaatca ggctgttgag atatctgcaa aacaaaagtt ccatgctgac taccgccatg      2460
     aatttgtagt aaatttgaat taactggcat gaccgagtaa ccwacttaac aactttscct      2520
     wagamgcgaa ccattatcag gatcttgaaa tatcattatt attatacatt atcacattat      2580
     tgtctctcaa ggttcaaata gtgcaagtta gaaatagcac ccctaccgga aaatttatca      2640
     tcaaaaagga tgatcctcaa cttctaaaga cagatcgtac tgagtactga aacttwtcca      2700
     aaggcagtac tatgctatct cctmwcgmat acmtccgaca acacccccaa attgatggaa      2760
     ttcgataaat cctgggtctc ctwttcgatt cattttcgac ctcacaakat caatgcccac      2820
     tcgcatcaaa taacatttcg tgtcgttttt ccaaaagtgc catgtatctc catgtctcgc      2880
     gtttcctaat aatcgaacat ctatttctag aatatatcta ttggctcagt tcaacagcat      2940
     taattgttat ctgattaatc gtaatcatag tcaaccatcg ttgaactcat cgttgcgtca      3000
     tggatacctc ggtggatatt gatgcgtgtt gattcagacc actagatcat ttcgttcacg      3060
     ataggaatga cgtcatcgag caactgtcag ttttcggagt atatcacctt atcaaataca      3120
     gtacaccgtg g                                                           3131
//
ID   P-1_AP      repbase;    DNA;    INV; 3575 BP.
XX
AC   Contig35933;
XX
DT   01-AUG-2009 (Rel. 14.07, Created)
DT   01-AUG-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; P-1_AP.
XX
NM   P-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3575
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1362-1362 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(489..1187,1268..3229)
FT                 /product="P-1_AP_1p"
FT                 /translation="MDFRFPLKNPERNQLWINAVGRKGFIPTKNSAICSSH
FT                 FVPSDFKINPGGNYRLHLNDTSVPSVFPGNTSEKKSQIEQNIEQNSPIREI
FT                 IDTNNLLLTTPSKVTARRPLFSPKTKSKHTSEPLKPRKIESKKKIKLLQQG
FT                 IRRRDKKINNLKSLLQNMRFKGLIEEQCEQLLIDQFEGTSQEIFCNELKNK
FT                 GKRPTGYRYSIQLKEFAATLHYYSPKALKYCRYYTFCYHKLFCYCFRTFLK
FT                 LPSGKSILNWTSSINGEPGFFKEVFDTLQTMSPDDRHCNLIFDAMSIKKQI
FT                 SWDERLGKFVGYCDYGNAFELEGSETPATETLVFMLTSINGKWKLPIGYVF
FT                 QNKITASIQAELIKSALTHAHNAGMTVWSVTCDGAYTNVCTLKLLRCKISN
FT                 SYDDIESWFEHPVTRSKVYYIPDACHMLKLARNILANNYVLESDTGYIRWD
FT                 HIRNLFKVQKDLTLKLANKLSMVHVNWHNNKMRVQYAAQTLSSSTADSLEY
FT                 LKNINFPGFENVEATVEYCRAIDRIFDFLNSKSKFSNAFKSPIYYNTIEKR
FT                 EEIIIPLIKYLYTLKFKGSPLHISSKKTFILGFAIAVKSFFSMSRSHFVQH
FT                 PNFKYLLTYKFSQDHLELLFGRIRQRLGSNNNPNTAQFKTAIKQILMKNAI
FT                 KCRSKHNCNTFDDDPIGSLFDFKWKTKKDDIDYEKVNFETIDIEALKKLQL
FT                 LNSYIPESNNYSSTLQDAKNNILYYIVGYLIRKLNLDCSSCENAVLDKFNE
FT                 HDYCKSLSFTKFVNFKNRSGLVFGSKSVFLIILEAEKMFLFLTDNFKSLQI
FT                 PNLEIKIIKHVIVTFSTDKNIFPNLNCENISILERPHKILLITLLTKKCLK
FT                 LRLKSFSKMYSSDIMNPVSKRHKLSKLILFSNQ*"
XX
SQ   Sequence 3575 BP; 1326 A; 523 C; 492 G; 1234 T; 0 other;
     catagacata taaaacaact agatagccga ctgtatatta cattgccata agaatgttga        60
     agtcgggccg ccatatgcca acagggcaat atttacataa taattcaata gataagatac       120
     tgtattgata tctgataata aacaatatta caaaaaacgt atttcttttc atattttact       180
     tttaccagaa tataaaatac aaattgaatt tctttagtct aaattactaa ttagtaataa       240
     aattaccaaa cggtacctac ataacctaca tactaaagta attaataaga tgccagtttc       300
     tcgttccgcc catgcctgta ctaatcgaag gcaacgtgat ggcaatatcc attttttttc       360
     gtaagtacct gcgaaataat ttttttttac tataatttaa cttttaagat tgtaggttca       420
     atccatatct acagttacta ataagtttaa ttagataaag catttcttat ttaattgttt       480
     attattgtat ggattttaga tttcctttaa aaaatcctga aagaaaccaa ctttggataa       540
     atgctgtagg gcgtaaagga tttattccaa caaaaaacag tgctatttgc agcagtcatt       600
     ttgtaccatc cgatttcaaa ataaatccag gaggcaatta ccgtttacat ttaaatgata       660
     cttctgtacc atctgttttc cctggtaata catcagaaaa aaaatctcaa attgaacaaa       720
     acattgagca aaattcacct attagagaga ttattgatac aaataattta ttattgacta       780
     ctccgtccaa agtaacagca agaaggcctt tattttctcc taaaacaaaa agtaaacata       840
     caagtgaacc tctaaaacct aggaaaattg agtcgaaaaa aaaaataaaa ttgttgcaac       900
     aaggaataag acgaagggat aaaaaaataa ataacttaaa aagcttatta caaaatatgc       960
     gttttaaagg tttgatcgaa gaacaatgtg agcaattatt aattgatcaa tttgaaggta      1020
     catcccaaga aattttttgc aacgagctca aaaacaaagg taaaagacca accgggtata      1080
     gatactctat acagcttaaa gagtttgctg ctacgcttca ttattattca cctaaagcgc      1140
     ttaaatattg caggtattat actttttgct atcacaaatt attttgctaa tcgcatatta      1200
     aaatacatgc tttgcactta atttacaatc aaatcatttt tttatttttt tttcctattt      1260
     aatataatat tgttttagaa catttttgaa attgccaagt ggtaaatcaa ttcttaactg      1320
     gacttcaagc attaatggcg agccaggttt tttcaaagaa gtttttgata cacttcaaac      1380
     catgagtcca gatgacagac actgtaatct aatttttgat gccatgtcta taaaaaaaca      1440
     gatttcgtgg gatgaaagac tgggtaagtt tgttggatac tgtgactatg gcaatgcatt      1500
     tgaacttgag ggatctgaaa caccagctac tgagacatta gtatttatgt tgaccagtat      1560
     taatggaaag tggaaattac caattgggta tgtttttcaa aataaaataa ctgcttctat      1620
     tcaagctgaa ctaattaaat cagcccttac tcatgctcat aatgctggga tgactgtctg      1680
     gagtgtaacg tgtgatgggg cctatacaaa tgtctgtact ttaaaacttt taagatgcaa      1740
     aataagcaat agctatgatg atattgaaag ttggtttgag catccagtaa ctagatccaa      1800
     agtatattat attccggacg catgtcacat gttaaaatta gcccggaaca ttttagctaa      1860
     taattatgta ttagaatctg atactggtta cattagatgg gaccatatca gaaatctatt      1920
     taaggttcaa aaagatttaa cattaaaatt agctaataaa ttgagtatgg tccatgttaa      1980
     ctggcataat aataaaatgc gagtccagta tgctgcccag accctgagct catctacagc      2040
     agattcctta gaatatctaa aaaatattaa cttccctggt tttgagaatg ttgaagccac      2100
     tgtagaatac tgtagagcaa tagaccgtat atttgatttt ttaaattcaa aaagtaaatt      2160
     ttcaaacgct tttaaaagtc caatttatta taataccatt gaaaaacgtg aagaaatcat      2220
     tattccacta attaaatatt tatacacttt aaaattcaaa ggatctccat tacatatatc      2280
     aagtaagaaa accttcatat taggttttgc aatagcagtt aaatctttct tttcaatgtc      2340
     cagatcacat tttgtacaac accctaattt caaatacctt ttaacgtata aattctcaca      2400
     ggatcatctc gaattgcttt ttggccgtat taggcagcgt ttaggatcaa acaataatcc      2460
     taatacagct caatttaaaa cagccataaa acagatcttg atgaaaaatg caattaaatg      2520
     tagatcaaaa cataactgca acacatttga tgacgatcca ataggttctt tatttgattt      2580
     taaatggaag actaaaaaag atgatattga ctatgaaaag gtaaacttcg aaacaattga      2640
     cattgaggca ttaaaaaaat tacaacttct aaattcttac attcctgaat caaataatta      2700
     ctcaagtact ttacaagatg ctaagaacaa cattttatat tatattgtgg gttacctaat      2760
     tagaaaactt aatttggatt gttcttcatg tgaaaacgct gtattagata aatttaatga      2820
     acatgactat tgtaaaagtt tatcatttac taagtttgta aatttcaaaa atagaagtgg      2880
     tcttgtattt ggttctaaat ctgtgttttt aattatacta gaagcagaaa aaatgttttt      2940
     atttttaaca gataatttta aatcacttca aattccaaat cttgaaatta aaataattaa      3000
     acatgttata gttactttct caacagataa aaatatattt ccaaacctaa attgtgaaaa      3060
     tatatccatt ctagaacggc cccataagat tctattaatt acactattaa caaaaaaatg      3120
     tttaaagtta aggttaaaat cattctcaaa aatgtattct tcagatatca tgaatccagt      3180
     aagcaaaaga cataaacttt ctaaattaat tttattttca aatcagtaat cactaattgt      3240
     tataaaaatt gtctaacact atattttact gttttgtttt gtaaataata tttattataa      3300
     tatagattga aatgtataat gtacttaata atgttatctt gtatgtattt attttcatta      3360
     tttgtataaa ataaaatgtt taaaaaagtt aaaatataat aaaattatac tgtattaaat      3420
     tatacatttt gagttttgac atttattttg ttatcatttt gttattaaat attcttatca      3480
     atcatgcgat tttgtaaaca ttgccctgtt ggcatatggc ggttgacttc aatattatcc      3540
     tgtagtcggc tatctagttg ttttatatgt ctatg                                 3575
//
ID   P-1_DBp     repbase;    DNA;    INV; 5129 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5129
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 599-599 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 882-bp TIRs. 7-bp TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1404..4073
FT                 /product="P-1_DBp_1p"
FT                 /note="THAP and transposase."
FT                 /translation="MNRPNVRKNGRKCIIASCQGSYRDSSHSIPIRLFSFP
FT                 SDDRNLKKWVELCQLDDTFNRRTARICNRHFESKYIGKSRLRSNAVPTLNL
FT                 CDNSLLRPNSTVPCEQFEFCDDGAEEPIGTYINPIGRKEFLNRVGSPSNLE
FT                 TPNLESSPQLEDFCSNCQKREENERFYRKKNYEMSLELKKYKEKMQKMRRA
FT                 FVLMKNSSRRKGMRNSRKSTLNLFNIINKLPHVSDEAKTLCKMLLKKSNSY
FT                 NSAEKVIAQNINFYSSRTYEYMRDVLKLKLPAKSTLCRWALFKNMTPGFQP
FT                 DFLENLQKIVGEMSEKGKEAVILCDEIKIKKGLQYNTALDEIQGFENDGEK
FT                 RTRFLGQQVCVFMARGLFENWKYVLSYTVSANGIKHDCLMKKVEANIEVSQ
FT                 TLGLNVRAIICDQGSNNRAAFKKWGVSINKPSFNVNGKEIFTIFDAPHLIK
FT                 SLRNLLIKNNLNTPDGDVSWDIIRKLYQIESRNSTRLCPKVTAKHINPNSF
FT                 EKMKVKYATQIFSHTVSAAIRTVIDSGGFVECRNSAEATANFIEKVNKLFD
FT                 CLNSHVLYEKNPYRCALQNNNNVHNYLLEMRNYFAEFKYPQVVHCIDGMML
FT                 TISSVLALSESVWSSEIFYLSTAKLNQDPLENLFYLIRARGVTNNNPSMSE
FT                 FNTIMSKMLSMKILTSKSLSGNCGPDEDTMLINVIQDCSLNKTCKELKTDE
FT                 DNTDFEMFSDDETEIEQVLDIATGDEFDSNALRYFAGYILFKILEKKDCGV
FT                 CADLLKKKIEAQTCTENFILNKNYDCADKTLKLKAPSDYYFSLIEIHYSVF
FT                 KKIFEKKPQMNRIKKTIIQSCISSTEKSSIYSNWFSVSHPCYEHRMKMLDG
FT                 FVLILLRKNSKWLTEKMYFKGKAASAAGSKKLKILKE"
XX
SQ   Sequence 5129 BP; 1766 A; 811 C; 930 G; 1620 T; 2 other;
     cactaaccat acagcatata gacaacccat ttcatacaac gaaaatggac gcgaaaattt        60
     cttgcgacag gccccagcag gccccagagc ggatttctta cgctctctta cgctcatcgt       120
     tcgttcatct tacgctcatt ctctcattaa attttttctg tttctcagtc tctaaacgga       180
     gcgcgatgaa gaaggttggc ctgcgcttcg gttgatcttc gtatgtatgc gtgtcacaca       240
     ttcacataca tgggtgtatg tgtgcgtgcg atttcgtttc gaagccagcg cacaaaattt       300
     tgatttttct tacttttcag gcttgctacc ctaaccaaat tcgggtattc gttatttgat       360
     gaaatgacga aagaaattat attatttttt atattatatt ttttattatt tcagcataca       420
     tttttaattt atttaggaat aagattaagt gttagtagta aaatgttttc tgtatatata       480
     tttttacgaa tcattaaaaa tcaatatact gagaaagtgt cagagtatat ttcagtcgga       540
     gtcacttaaa acgccgattg cttttaagtt tttgttgttc tgcaagaggc ttgtgcatgc       600
     ctactctaac gatggaatga tttttagggg agggtgaaga cacgaaaaca gctgatggta       660
     cttgtttacc ttttttgttt acaatttttt aggcacttgt tattattttg gtttattgtg       720
     agattttatt aaattattgt cattaattta ataatttccc tatatatttt ggaactttaa       780
     aaagtcgccg ctcgaatttg ttacagatat atatacatat atataaatat atatatatat       840
     ttacattggt tttatgctta tggattctta tatggtttta tgatctattg tgcatatctt       900
     attcttatat cttatatctt atgatctgct gtgtaattta aaatatatac atgaatataa       960
     aaatgtcact accgtattta cacaccgtca tttccctgtg gtatgccttt ggagttcttg      1020
     gcaatgaaag tgttaacttg cgcgccaaaa ctattttttt tctggtttgt tttgattctt      1080
     gtaatttttg gttgccactt ggcttaccca ccaacctaat ttacccgcct aaaatattgc      1140
     catttgatga aaaagaggaa aatggtttaa tcggcattct atttttgttc tgtgaggagc      1200
     gtttttcgtg aggaccaaat taagtgctga tttttgtgaa caaagtgatt agtatcggtg      1260
     tgttaacgta tttttcggaa atatttttac taaacgtaaa ctttccgagc gtccgtggct      1320
     acatcatcat caattgcaag tataaatcta gttatttaaa ccttaaataa tttatttaaa      1380
     tattcggttt aaatattttt gaaatgaatc ggcctaatgt taggaaaaat ggacgcaagt      1440
     gcattattgc atcctgccag gggagttaca gggattcatc acactccatt ccaattagat      1500
     tgttttcttt tccatcggat gataggaatc ttaagaaatg ggttgaattg tgccaattgg      1560
     atgacacttt taacagacga actgcgcgaa tttgtaacag acattttgaa agtaaatata      1620
     ttgggaaaag taggcttaga agcaatgccg tacccacttt aaatttatgt gacaattcac      1680
     tattgcgtcc gaacagtact gttccatgtg aacaatttga attttgtgat gatggggcgg      1740
     aagaaccaat tggcacttat attaacccaa taggaagaaa agagttttta aatagggtag      1800
     gtagcccttc caatttagaa actcccaatt tagaaagttc acctcagtta gaagattttt      1860
     gttcaaattg ccagaagagg gaagaaaatg agagatttta cagaaaaaag aattatgaga      1920
     tgtctcttga actaaaaaaa tacaaagaaa aaatgcaaaa aatgagaagg gcttttgttt      1980
     taatgaaaaa ttctagtaga cgcaagggta tgagaaatag tagaaaaagc accctaaatt      2040
     tatttaatat tataaataaa ttacctcatg tttctgatga ggccaaaaca ttatgcaaaa      2100
     tgctgctaaa aaaatcgaac tcatataaca gcgcagaaaa agtgatagcc cagaatataa      2160
     atttttattc ttcgcgaacg tatgagtaca tgagggatgt tttaaagtta aaacttcctg      2220
     ccaaaagtac gttgtgtcga tgggctcttt ttaaaaatat gacgccagga tttcaacctg      2280
     attttctaga aaacctccag aaaattgttg gtgaaatgag cgagaaaggt aaagaagcag      2340
     tgatcctttg tgatgaaata aaaatcaaaa aaggactgca atataatacc gctctcgatg      2400
     aaattcaggg atttgaaaat gatggtgaaa aaagaactcg atttttaggg cagcaagtat      2460
     gcgtcttcat ggctagaggc ttatttgaaa attggaagta cgttttaagc tatactgttt      2520
     cggctaacgg tattaagcat gattgcctca tgaaaaaagt tgaagcgaac atagaagttt      2580
     cgcaaacgtt ggggttaaac gtacgtgcca taatatgcga tcaaggctca aataatagag      2640
     ctgcatttaa gaaatggggc gttagcataa acaagccgag tttcaatgtt aacggtaaag      2700
     aaatatttac aatatttgat gccccacatc ttataaaatc attgagaaac cttttaataa      2760
     aaaataattt aaacacgccg gatggagatg tatcttggga tataataagg aagttatacc      2820
     aaattgagtc tagaaactca acgaggcttt gtcccaaagt aacggcgaag catataaatc      2880
     caaactcatt tgaaaaaatg aaagttaaat atgcaacaca aatatttagc cacactgttt      2940
     cggccgcaat ccgaacagtg attgattctg gcggatttgt ggaatgccga aatagcgcag      3000
     aagctacggc aaattttatt gaaaaggtta ataagctctt tgattgcctc aatagccatg      3060
     ttttgtatga aaaaaatccg tacaggtgtg cactgcaaaa taataataac gttcacaatt      3120
     acctcttaga aatgaggaat tattttgcag aatttaaata tccacaagta gtacattgca      3180
     ttgacggcat gatgttaaca atttcatcag tacttgcact atctgaaagt gtgtggagct      3240
     ccgaaatctt ttatttatca accgcgaaat tgaatcaaga ccccttagaa aacttgtttt      3300
     atttaataag ggctcgcgga gtaacaaata acaatccatc gatgtcagaa tttaatacaa      3360
     taatgtcaaa aatgctatca atgaaaatat taacttcgaa atcattatct ggtaattgcg      3420
     gcccagatga agatacaatg ttaattaacg ttatccagga ctgcagcttg aataaaactt      3480
     gcaaagagtt aaaaaccgac gaagacaata ccgatttcga gatgttctca gatgacgaga      3540
     cggaaattga gcaagttttg gatattgcaa ctggtgacga gtttgatagc aatgccttgc      3600
     gatattttgc aggctatata ttgtttaaaa ttctggaaaa aaaagattgc ggagtgtgtg      3660
     ctgatctatt aaagaaaaaa atagaagcac aaacctgtac ggaaaatttt atactgaata      3720
     aaaattatga ctgcgctgat aaaactttaa aacttaaagc tccttctgac tactattttt      3780
     ctttgattga aatacattat tctgttttta agaaaatatt tgaaaaaaag ccacagatga      3840
     acagaataaa gaaaacaatt attcaatctt gcatatcctc cactgaaaaa tccagcatat      3900
     attctaattg gttttcggtt agccatccct gttatgaaca caggatgaaa atgcttgacg      3960
     gatttgtttt aatattattg aggaaaaaca gcaaatggct aacagaaaaa atgtatttca      4020
     aaggaaaagc tgcatcagca gcaggttcaa agaaactaaa aatactcaaa gaataatttt      4080
     tggttttgta attgtctcat tttattatta gattaggagt aggttatgtt aggtggggaa      4140
     caaggagata gccaattagt tttggtatct caagtcgact cgaaagtctt cattgaagac      4200
     tccatcgcaa tcgcaatggc ctcctcgtgg tgttccctgg ataccgacat aaatacatat      4260
     atatatatat atacatatat aagtacgtaa atatatatat atatatttat atatatgtat      4320
     atatatctgt aacaaattcg agcggcgact twttaaagtt ccaaaatata tagggaaatt      4380
     attaaattaa tgacaataat ttaataaaat ctcacaataa accaaaataa taacaagtgc      4440
     ctaaaaaatt gtaaacaaaa aaggtaamca agtccatcag ctgttttcgt gtcttcaccc      4500
     tcccctaaaa atcattccat cgttagagta ggcatgcaca agcctcttgc agaacaacaa      4560
     aacttaaaag caatcggcgt tttaagtgac tccgactgaa atatactctg acactttctc      4620
     agtatattga tttttaatga ttcgtaaaaa tatatataca gaaaacattt tactactaac      4680
     acttaatctt attcctaaat aaattaaaaa tgtatgctga aataataaaa aatataatat      4740
     aaaaataata taatttcttt cgtcatttca tcaaataacg aatacccgaa tttggttagg      4800
     gtagcaagcc tgaaaagtaa gaaaaatcaa aattttgtgc gctggcttcg aaacgaaatc      4860
     gcacgcacac atacacccat gtatgtgaat gtgtgacacg catacatacg aagatcaacc      4920
     gaagcgcagg ccaaccttct tcatcgcgct ccgtttagag actgagaaac agaaaaaatt      4980
     taatgagaga atgagcgtaa gatgaacgaa cgatgagcgt aagagagcgt aagaaatccg      5040
     ctctggggcc tgctggggcc tgtcgcaaga aattttcgcg tccattttcg ttgtatgaaa      5100
     tgggttgtct atatgctgta tggttagtg                                        5129
//
ID   P-1_DRh     repbase;    DNA;    INV; 4469 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.08, Created)
DT   13-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4469
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1415-1415 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           813..3542
FT                 /product="P-1_DRh_1p"
FT                 /translation="MNQHSVRKNGRRCIIECCRGSYRDSSDSFPVKLFSFP
FT                 SDDRRLKKWVELCNLDDNFNRRTSRICNRHFESKYIGINRLKSNAVPTLNL
FT                 TDNFLLRPDSSVPCEQFEFNDDGAEEPIGIYVNPIRSQNLSDSLDVSPLNF
FT                 EAPKSDANLVTPSAVQLYVSPSDLVTPSVPQLGNCCYCQKREENEMFYRNK
FT                 NYEMFLAIKTYKQKIEKLRRANVLMKNAMKRKSKIISKKKSINIFNIINKL
FT                 PHVSEEAKTICKMLIKKSNSYNSAEKVIAQNINFYSSRTYEYMRDVLNLKL
FT                 PSKRTLSRWALFKNMTPGFQPDLLENLQKIVGEMSEKGKEAVILCDEIKIK
FT                 KGLQYNTALDEIQGFENDGEKRTRFLGQQVCVFMARGLFENWKYVISYTVS
FT                 ANGIKHDALMSKVEANIGVSQTLGLNVRAIICDQGSNNRAAFKKWGVNINK
FT                 PSFNVNGKEIFTIFDAPHLIKSLRNIIMKNNLITPDGEVSWDILKKLYQLE
FT                 SRNSTRLCPKLTAKHINPNSFEKMKVKYATQIFSHTVAAAIRTVIDSGGFV
FT                 ECRNSAEATANFIEKINRLFDCLNSHVLYERNPYRCGMQKNNNVQRYLVEM
FT                 RKYFGELKYPQLVHCIDGMILSISSVLALAESVWSSEIFYISTAKLNQDPL
FT                 ENLFYLIRARGATNNNPTMYEFNIIMSKMLSMKILTSTSVSGNCGPDEDTM
FT                 LINVIQDCSLNKTCNDIKTEESTDFDMFSDEETEIEQIFDIATGNEFDSNA
FT                 LRYFAGYILFKFLQKKECGVCSDLLKTNIETQCSTEHFIINKNYDCADKGL
FT                 KLKAPSDYYFSLIEIHYNIFKKIFDKNPYKKRIKQKIIRSCILATEKSSIY
FT                 SNWFSVTHSCYEHRMKMLDGFILILLRKNSKWLTEKMYTKGKAVSTAGARK
FT                 LKILKQ"
XX
SQ   Sequence 4469 BP; 1569 A; 662 C; 815 G; 1420 T; 3 other;
     cgaacagggc atatcgcagt cggtgtcaca aaaaacaccg actgctttta agtggttcag        60
     aaaacttcaa accaaatcag ctttggttgt tgttctgcga gcggatggtg cctgcatacc       120
     ctaccgacga ttgaatttta ggggtggggg cagaaacaag aacggctgtt tggcttttgt       180
     tttgtttaca ttttttagga cacttgtttt gaatgttatg tttaatgacc tttggttgat       240
     ttattttttt aaggttcgca gtgtaatttt aattgtcttt ttcctttggt atttctatga       300
     gagatgttgt ttttggcaat gcatgtaata ggccgactta taacttgcgc gccaattcta       360
     ttgtttttgt ttggtttgtt ttgattatga acttggcacg cgtttttttg ttgttttttg       420
     atttttggtt gtcacttggt ttacatatgg gtgcattagt aaatagcttc atttgcgcgc       480
     gtaaaatgtt gccatttgat agaaaaagtc aagcatcttt caattggctt ttgattgtgc       540
     ttctgtgcgg tgatttttac agtgcaaaac ggatagaaat taaaaaagtt aaaaaattta       600
     atttacaata cagcgtgttt ttttcaaaac gcctgtgttg ctgttttgag tgtggttacg       660
     gtgcaaaaag ttaaagtttt tatttacaat acagcgtgtt tttttcaaaa cgcctgtctt       720
     gctgttccga gtgtccgtgg ttgtataatc ttcaattcgc aagtataaaa atattttaac       780
     ttatctaaat attattttta agtatttttg caatgaatca gcatagtgtt aggaaaaatg       840
     gtcggaggtg tattatagag tgctgcaggg ggagttatag ggattcatca gactccttcc       900
     cagttaagtt gttttcattt ccatcagatg ataggagact taaaaaatgg gttgagttat       960
     gcaatttgga tgacaatttt aatagacgaa cttcgcgtat ttgtaataga catttcgaaa      1020
     gtaaatatat tgggataaat aggcttaaaa gcaatgccgt gcccactttg aatttaactg      1080
     acaacttcct tttgcgtccg gacagttctg ttccttgtga acaatttgaa tttaatgatg      1140
     atggggcaga agaaccaatt ggcatttatg taaacccaat taggtcacaa aatttgtccg      1200
     atagtttaga tgttagccct ttaaattttg aggcaccgaa gtcagatgct aatttagtaa      1260
     ctcctagtgc agtgcagtta tatgttagcc cttctgattt agtaactcct agtgtaccgc      1320
     agttaggaaa ttgttgttat tgccaaaaaa gggaagaaaa tgagatgttt tatagaaata      1380
     aaaattacga gatgtttctt gcgattaaaa cgtataaaca aaaaatagag aaattgagaa      1440
     gagctaatgt tttaatgaaa aatgctatga agcgcaaaag taagataatt agcaagaaaa      1500
     aaagcataaa tatatttaac attataaata aattgcctca tgtttctgaa gaggcaaaaa      1560
     ctatatgcaa aatgctgata aaaaaatcaa attcttacaa cagcgcagaa aaagtaatag      1620
     ctcaaaacat aaacttttat tcatcccgaa catatgaata tatgcgggat gttttaaatt      1680
     taaaacttcc gtcaaaacgg acgttgtctc gatgggctct ttttaaaaat atgacgccag      1740
     gatttcaacc tgatttatta gaaaaccttc agaaaattgt tggtgaaatg agtgagaaag      1800
     gtaaagaagc agttatcctt tgtgatgaaa taaaaataaa aaaaggactg caatataata      1860
     ccgcactcga tgaaattcaa ggatttgaaa acgatggcga gaaaagaaca cggtttttgg      1920
     ggcagcaagt atgcgttttt atggctagag gcttatttga aaattggaag tacgttataa      1980
     gttatactgt ttcggctaac ggtattaaac atgatgccct catgagcaaa gttgaagcga      2040
     acattggagt ttcgcaaact ttggggctta acgtacgagc tataatatgc gatcaaggct      2100
     caaataatag agcagcattc aaaaaatggg gagttaacat aaacaagccg agttttaatg      2160
     ttaacggaaa agaaatattt acaatatttg atgccccaca tcttattaaa tcattgagaa      2220
     atataataat gaagaacaat ttaattacgc ctgatggcga agtatcttgg gatatattaa      2280
     aaaaattata ccaacttgag tccagaaact caacgaggct ttgtcccaaa ttaactgcca      2340
     agcatattaa tccgaattca tttgaaaaaa tgaaagttaa atatgcaaca caaatattta      2400
     gccacactgt tgcggccgca atccgaacag tgattgattc tggcggattt gtggaatgcc      2460
     gaaatagcgc agaagctacg gcaaatttta tagaaaaaat aaataggctc tttgattgcc      2520
     tcaatagcca tgttctatat gaaagaaacc catacagatg tggaatgcag aaaaataata      2580
     acgtacaaag atacctcgtt gaaatgagga agtattttgg agaacttaaa tatccacaat      2640
     tagtgcattg cattgacgga atgattttga gcatttcatc tgtacttgca ctagctgaaa      2700
     gtgtgtggag ctccgaaata ttttatatat caaccgcgaa attgaatcaa gaccccttag      2760
     aaaacctatt ttatttaata agggctcgcg gagcaacaaa taataatcca acgatgtatg      2820
     aatttaacat cataatgtca aaaatgctat cgatgaaaat attaacatcc acatcagtat      2880
     ctggtaattg cggcccagat gaagatacaa tgttaataaa tgttatccag gactgcagct      2940
     taaacaaaac ttgtaatgac ataaaaaccg aagaaagtac cgatttcgat atgttctcag      3000
     atgaagagac ggaaattgag caaatttttg atattgcaac tggaaacgaa tttgatagca      3060
     atgccttgcg atattttgca ggctatatat tgttcaaatt tctgcaaaaa aaagagtgcg      3120
     gagtgtgttc tgatctatta aaaacaaata tagaaacaca atgctccaca gaacatttta      3180
     ttataaataa aaattatgac tgcgccgata aaggtttaaa acttaaagct ccttcagatt      3240
     actatttctc tttaattgaa attcactaca atatttttaa aaaaatattt gacaaaaatc      3300
     cttataagaa aagaataaaa caaaaaatta tacgttcctg tatactcgcc actgaaaagt      3360
     ccagcattta ttcaaattgg ttttcggtta cccattcctg ttatgaacac aggatgaaaa      3420
     tgctagatgg atttatttta attttactga ggaaaaacag taaatggctt acagaaaaaa      3480
     tgtatacgaa aggaaaagct gtatcaacag ctggtgcaag aaaactaaaa atactcaaac      3540
     agtaattagt ttcttataaa atgtttaatt tttttgtagt ataggaggta ttgttaggtg      3600
     gggaacaagg agatgtttaa agcattttga tatctcaagt cgactcgtaa gtcttcattg      3660
     aagactccat cgcaattgca atggcctcct cgtggtgttc cctggatacc gatttaacga      3720
     tacatatatt acttacatac acctgtgctt acagcaatat tagtgggaaa aattggataa      3780
     ataaactttt acattattcg atcgaaattt aaatatatta aaaatcatta aaagtttact      3840
     tcttgattta aaatagtaat atacgtttaa gaaaattaat ttgaatattt ttgattttta      3900
     tagtgattaa acaattggtt attttccgag attaaaatta tacaattgaa aaatttaaat      3960
     attatttaaa taaaaaaatt cagatttgta tatttgttcc atttaccttt tacaaaaata      4020
     aaaagtattt tagaagttgt gaaaaagttt cattttttta agttgtgaaa aagtttaaaa      4080
     actactattt aacacaggtg tacatatatg tatgtatatt tatcggtaac taattcgagc      4140
     ggcgactttt aagaacaaac atacataaaa acaaaagnag ataattaatt acacaattaa      4200
     acgnnattac actgcgaacc ttaaaaaaat aaatcaacca aaggtcatta aacataacat      4260
     tcaaaacaag tgtcctaaaa aatgtaagca aaacaaaagc aacagccgtt cttgtttctg      4320
     cccgcacccc taaaattcaa tcgtcggtag cgtatgcagg caccatccgc tcgcagaaca      4380
     acaaccaaag ctgatttggt ttgaagtttt ctgaaccact taaaagcagt cggtgttttt      4440
     gtgacaccga ctgcgatatg ccctgttcg                                        4469
//
ID   P-1_DSer    repbase;    DNA;    INV; 4239 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4239
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1846-1846 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 7-bp TSDs. 5-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           998..3568
FT                 /product="P-1_DSer_1p"
FT                 /note="THAP domain and transposase."
FT                 /translation="MTMADKKRAQISGNKCSLPHCQKSRRDFPALKLFKFP
FT                 EKDPEILMKWAEKCNFSEDFVANTSSLFLCQDHFCPDDIGIKYLRRGTIPD
FT                 RNLVKDYSCDNAETDFNAVSFPPLKRHRSQSPVEICRQCHKSTKTLKCFQK
FT                 KYFAFRKLSDDRQIRIKKLQKENSNLKRKVIRLEAKTQKNLLSEIEKMNLT
FT                 GNEKILAKMLLKEKKGTNMRWNDSEKLFAQSIYYRSTSTYMFLRDSLELNL
FT                 PSPSSLQKWNSIKKLQPGDNECLYSALKDTIKEMTESEKECIITCDEVAIK
FT                 RNLTYNSSVDVIDGLEHLLERSDKMGSHICVFVIRGILKKWKFILNYFVPE
FT                 TNIKGECLKSLIHKNINIAENIGFKVRGVVYDQGGNNRKCTSLLEVTNEKP
FT                 YFSFNNQKYYMFYDIPHLFKSIRNNLLKAKFETPDGIVDFDVIREVYELEQ
FT                 GSVTRMTKLTKSHVNPNRFELMRVCLATQTFSHTVSAAIKACNQNKQLQRN
FT                 SSEVAASTAAFVQRVNDYFDCLNSRVLTDKNPMKCALQIDNMVWNKLKEMQ
FT                 EYLKNVKYQGNNIYCLDGLLQTTEAMFGLVKDLFKDHTDHFFFLTSRVNQD
FT                 PLENIFACVRAKGGNCRNPSVNEFNIIIAKLISLHIFKFSQKTNCESDDDV
FT                 MLPVEFDSIIYQPGIEKKEIQKQEYSVSYSEIVQDNERYFDKNMDNFLSNN
FT                 VPIELTSSRYFCGYIAKASSCDNCRSLLIKEDEQLTAPSELFIHEKNYSSD
FT                 SDFGKLKAPSDIFFNVCKIHIKVFENIFKNNKQQINIRKFIVEQCIKCTNE
FT                 SIDYSLWFDINNECYVHKIDLLNKLVKVLLFKHCKWTVIADKQKKQAKLSI
FT                 LCHK"
XX
SQ   Sequence 4239 BP; 1519 A; 674 C; 729 G; 1317 T; 0 other;
     caaaggtgta taagtataag attagtaacg ccatacgatt tttttgcaca cgattttttc        60
     gtgctggctt ttgaactggc tccaggctct ctcgcacttc gttcaaaagc cagcgagaga       120
     gcgctctaga gccagccgct ctctcgtgct ggctctagcc gctctctcgt gctggctcta       180
     gactctagag tctagagcca gcagcactct cacgcataca gcaatgtttt cgtgatggct       240
     ctagagccag cagctctctc atacgcatac agcaacatgg cgtgcctcaa aataccgatt       300
     tcgcggttga atttattaca aatttgtaca tttattttat tttattttta taatttatgt       360
     atatatttat atatatatat aaataaatat tatttctaag tcaattgaat tgaataatta       420
     taaatacata tataaatatg aatttaaatg gtattttttt gttattataa taataatatt       480
     taatatatgt atatatttaa taattcaaat atataatata catacatatt tatatattct       540
     gtatgtacat attatgtaaa taacccattt ttagtatttg atatgaaaat aaaatttagt       600
     tacatgattt tctgtaattc aaatttattt gatttgcgcg cccgggcaag aaaagctcga       660
     gcaagaaaag cgcgccaatt ctttgtattc ccccttttgt ttctcttctt gcgttcgcta       720
     aaggcctaca acagcataga gtggcgatta ataagattat taattattca aacgctttgt       780
     tatcaaataa aatctaaccc gttgcatttg tgacataaac tataataaat gagtgtaaaa       840
     attgtgcaaa taagtggtat aaatagcaaa ttacaacttt tttcgttgtt tcggaacttt       900
     gcgcgccaat tttacgtgct gctgctattg acacaggttt gagttttagc attatttgtt       960
     gtttagttgt taaaaataag gccatttgaa agcccttatg acaatggcag ataaaaagag      1020
     agcacaaatc agtggaaaca agtgcagcct gccccactgc caaaaatcta ggcgcgattt      1080
     ccccgccctt aaattgttca aatttccaga gaaagaccca gaaattctaa tgaaatgggc      1140
     agaaaaatgc aattttagtg aggattttgt ggcgaacact tcatcactgt ttttatgcca      1200
     agatcatttc tgcccagatg atattgggat aaaatatctg aggcgaggaa caatcccaga      1260
     tcgcaatcta gtaaaagatt acagttgtga taatgctgaa acagatttta atgctgtaag      1320
     cttccctcca ctaaaaagac accgctcaca gtcacctgtt gaaatttgtc gtcagtgcca      1380
     taaaagcaca aaaactttaa aatgtttcca aaagaaatat tttgccttca ggaaattgtc      1440
     tgatgataga caaataagaa taaagaagct gcaaaaagaa aattcgaatt taaaacgaaa      1500
     ggtgattagg ttagaagcaa agacgcaaaa aaacctactt tctgaaattg agaaaatgaa      1560
     tttaactgga aacgaaaaga tattggcgaa aatgcttcta aaagaaaaaa agggaacaaa      1620
     tatgagatgg aatgattccg aaaagttgtt tgctcagagc atttattaca ggtcgacgtc      1680
     aacatatatg tttttaaggg actctttgga attaaatctt cccagtccat cgtctctaca      1740
     aaagtggaac agcataaaaa aattacagcc gggagacaac gaatgtttgt actcagccct      1800
     taaagacact attaaggaaa tgacagaatc tgaaaaagaa tgcataataa cttgtgatga      1860
     agttgcaata aaaagaaatt taacatacaa ttcctcagtt gacgtaattg atggcttaga      1920
     gcatttactt gaacgctcag ataaaatggg aagccacatt tgcgtatttg ttataagggg      1980
     tattttaaaa aaatggaaat ttatattgaa ctattttgtg ccagaaacaa acattaaagg      2040
     agaatgcctt aaaagcctta ttcataaaaa cattaatatt gctgaaaata ttgggttcaa      2100
     agtaagaggt gttgtgtatg atcaaggagg taacaataga aaatgtacct cgttacttga      2160
     agtcacgaat gagaaacctt actttagctt caataatcag aaatattata tgttttatga      2220
     cattccgcat cttttcaaat caataagaaa taacttacta aaagctaagt ttgaaacccc      2280
     tgacggaata gttgatttcg atgttatacg agaggtatac gaattagagc agggatcagt      2340
     aacgagaatg actaaattaa caaaaagtca cgttaatcca aatagatttg agcttatgcg      2400
     ggtatgtttg gcaacacaga catttagtca cactgtttct gcggcaatta aagcttgtaa      2460
     tcaaaacaag cagctccaac gaaatagttc agaagtggca gcctctactg ctgcatttgt      2520
     ccaaagagtt aatgattact ttgattgcct gaatagcaga gtattaactg acaaaaaccc      2580
     catgaaatgt gcactgcaaa ttgataatat ggtttggaac aaactgaagg aaatgcagga      2640
     atacctaaag aacgttaaat accaaggaaa taatatatat tgtcttgatg gcttgctcca      2700
     aactactgag gctatgtttg gactcgttaa agatcttttt aaagaccaca cggatcactt      2760
     tttcttcttg actagtcgag ttaaccagga tccgcttgaa aatatatttg cgtgcgttcg      2820
     tgcaaaaggt ggtaactgca gaaacccttc agttaatgaa tttaatataa taattgccaa      2880
     actaatatct ttgcatattt ttaaattttc ccaaaagaca aattgcgaat cagatgatga      2940
     tgttatgttg ccagtagagt ttgattcaat tatatatcaa cctggcattg aaaagaaaga      3000
     aatacagaag caagagtatt ctgtatcata ttcagaaatt gtccaagaca atgagaggta      3060
     ctttgacaaa aatatggata attttttgag caataatgta cccattgaat taacctcgag      3120
     tagatatttt tgtggatata ttgcaaaggc atctagttgt gataattgca gatcgttact      3180
     gattaaagaa gacgagcaat taacagctcc atccgagctt tttatacatg aaaaaaacta      3240
     ctcgagcgac tcggactttg gaaaattaaa agcaccatct gatatatttt ttaatgtctg      3300
     caaaatccat ataaaggttt ttgaaaatat tttcaaaaat aataaacaac aaattaatat      3360
     tagaaaattt attgtggaac aatgcattaa atgcacaaat gaaagtattg attactcatt      3420
     atggttcgat ataaataatg aatgttatgt gcataagatt gatctcttaa ataaacttgt      3480
     aaaagtttta ctttttaagc attgtaaatg gactgtgata gctgataagc agaagaagca      3540
     agctaagctc agtattttat gtcataaata ataaacggca atgattttta tgatttgata      3600
     atgaatgtgg actaggccta ttggggatac cacaataaat aaaacgcgcc agaaaatcta      3660
     cctctatggt ggtgtggaaa cgatttaaac caatatttat tatgaactta atattttctt      3720
     attattttta atattattat tgtgacataa gaactataga ttttaaatta aatattggaa      3780
     ttaaacgaag tatttttatt ttttgcatta cttataaaaa taaaataatt aaaaataaag      3840
     aaaaaaagaa caatataaag ggactcaagc actttaaaaa tgtaaacaaa ctaaaatcaa      3900
     aacaaacaaa cacatcgata tgcacatgta tacatcagct gtttttgctg ccgttctcgt      3960
     ccccctctct acctaacaag cggtcagcag cccaaaatat aaaatttaat ttttcgtcgt      4020
     tgggcatgcg aacagaagca cacacatatt cacgcacaca tgcgcacttt tttgttctgt      4080
     gtttactcat acatgcaaac gcattctatt tttagatatt tacgctctca actttgtgag      4140
     agcagggaga gcgccattgt cgtttgaatc aaaaaattag cctcatattg caaaacgaat      4200
     gtatggccgt gaggcatctt ataagttata aagtctttg                             4239
//
ID   P-1_DSuz    repbase;    DNA;    INV; 3859 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   09-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3859
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 139-139 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(580..1053,1168..1584,1517..1813,1817..2644,
FT                 2643..3101)
FT                 /product="P-1_DSuz_1p"
FT                 /translation="MNTGNKCSLAHCKKSKRDFPGIKLFKFPSNDXFLFIE
FT                 WAKQCGFTEDFVANSGSLFLXEDHFLPENIGQRYLKKGAIPVLSLSRPMEK
FT                 VENTEEDANLFQSLPXKRTRSESPAESCRQCHRHVTTSKAFQKIIILNKKN
FT                 XQYKKKRLELLEKETSRTAVEYNRKIICAIHFFRSASTYIFLRNSLKLNLP
FT                 SPSSLQKWSSIKKLQPGDNECLYKALKDAIKPMNKAERECILACDEVSIKK
FT                 NLTYNSSSDIIDGLEHLLERSNNLGTHICVFILRGLFFELEIRFKLFCPSY
FT                 KYKRREVFFSNWKFVLNYFVPATNIKGDELKSLIFKNIFVSEEIGFSLRGL
FT                 VFDQGGNNRKCCSLLGVTKEIPFFTLKDKKYFVFFDIPHLFKSKRNSLLKS
FT                 KLTPDGIVDFDVTRELYDLEKGSVTRMTKLTRSHVYPTRFEQMRVCLATQT
FT                 FSHTVAAALRSCYQNGHLQRSSLEKAKSTATFAKKINDYFDCLNSGVLYDK
FT                 NPFKCALQIDNRVWKSLKEMQIYLSNVKTQGYKIYCIDGLLQTTEAILGIV
FT                 HDLFNDNQELSFVFTSRFNQDPLENLFACVRANGGNCRNPTVHQFNTIIAK
FT                 LMSLKIHNFSSKSNCESDTDIMLPVKLDSIIYEPNENKVASNDETVLFSEI
FT                 EKENQAYFDSSADDFVAPIYPLNIDISRYFVGYIGKESNNCKRCEAIILKQ
FT                 GEMLNSPSEIFIAEKNFSNDSEFGKLSSPSDIFFNVCKIHIKVFVNIFNNN
FT                 KKQEHIKQFIMSKCVTCTGESDFSSWFDENDECYSHNMLMLDKLIRVLLYK
FT                 HCKWLDSPAKCKTSNKLNILRHK"
XX
SQ   Sequence 3859 BP; 1346 A; 632 C; 690 G; 1177 T; 14 other;
     caaagaccat agaataacaa gatgcgtaac agccatacaa ctgaatgtac ggcaaaattt        60
     ttggtgtgga ttttcgatgt ggattttcga tcttgcttgt gtgcgttgtc cgtgtaaagc       120
     tctttggttg tgttggtgaa tcatttcgtg tggtctgctg caataagggc tcaatgtcgc       180
     atttgactaa cgcaagttgt caaaggcctg taggccaggg gtctagtcgc tcaaccgcga       240
     gaattgcagg tcggagttca accccggcga ctttttttta tgcaatcggt ctttttttaa       300
     acaattaaat aaattgaaca tggtgttcat ggtgttttaa acaatctcca tggtattcag       360
     cccatgtttt acttgatttt ttaaaaaatg gccgattgaa aacatcatga tgtttattta       420
     acatcaatgt tttgtcgatt gtttgtgtcg aatatcgata atagatgcta caataaatat       480
     caacgatttg attgacccaa gcacaaaagt cacattcttc atttggttgt cgacgagtac       540
     acatcttaca gctctccaat taatttttga cttttagcaa tgaataccgg caataaatgc       600
     tccctggcac attgtaagaa atcaaagcgg gattttccgg gcataaaatt gttcaagttt       660
     ccttctaatg atgmatttct tttcatagaa tgggcaaagc aatgcggctt cacggaagat       720
     tttgtggcaa actccggttc gctcttttta tgwgaagacc actttttacc tgaaaatatc       780
     ggtcaaaggt atttaaaaaa gggggccatt ccagttctaa gtctgtccag accaatggaa       840
     aaggtggaga atacagaaga ggacgcgaac ctgtttcaat cccttccaak aaaaagaact       900
     cgatccgagt ctccggcgga gtcttgccgc caatgccata gacatgttac aacttcaaag       960
     gcctttcaaa aaataattat tttaaataaa aaaaatktac aatataaaaa gaaacgactg      1020
     gaattgctgg aaaaagaaac gagtagaacg gcttaaacaa aaagcaagca agaattttgt      1080
     atcggaawta gattctatgg ccctaagtga aaatgagaac attttagtga aaatgcttat      1140
     aaaagaaaaa agtggaagaa gcgttaggtg gaatacaaca gaaaaattat ttgcgcaatc      1200
     cattttttta ggtcagcatc aacctacata tttttgcgaa attctctcaa gctgaatctt      1260
     cctagtcctt cgtcgttgca aaagtggagc tccattaaaa aacttcaacc aggcgacaat      1320
     gaatgcttat ataaagcatt aaaagatgca atcaaaccga tgaataaagc tgaaagggag      1380
     tgtattttag catgcgacga agtatctatt aagaaaaact tgacgtataa ttcatctagc      1440
     gacataattg acggcttgga gcatttactg gaacgctcaa ataacttggg aacacacata      1500
     tgcgttttta ttttaagagg tctttttttc gaattggaaa ttcgttttaa attattttgt      1560
     cccagctaca aatataaaag gcgatgagct taaatctctt atttttaaaa atattttcgt      1620
     ttctgaagaa attggttttt ccttaagagg tctagttttt gatcaaggag ggaataatag      1680
     aaaatgctgt tctcttcttg gagttactaa agaaatcccc ttcttcactt tgaaggataa      1740
     aaaatatttc gtgttttttg atataccaca cctctttaag tcaaaaagaa atagtctttt      1800
     aaaatctaag ctataaaccc ccgatggcat agtcgacttt gatgttactc gagagcttta      1860
     tgacttggaa aagggatctg tcacaagaat gactaagcta actagatctc acgtttaccc      1920
     aacccggttt gagcagatga gagtttgctt agccacccaa acttttagtc atacagtcgc      1980
     tgctgcttta agatcatgct atcaaaacgg acacttgcag agaagttctt tagaaaaagc      2040
     caaatcaact gcaacmtttg ctaagaaaat aaatgactat tttgactgtc ttaatagcgg      2100
     cgttttgtat gataaaaatc catttaagtg tgctctacaa attgataata gggtttggaa      2160
     aagtttgaag gaaatgcaaa tatatttatc caatgtcaaa acgcagggat ataaaatata      2220
     ttgtatagac ggtttgctgc aaacaactga agcaatttta ggaatagttc acgatctttt      2280
     taatgataat caggaacttt ccttcgtttt tacaagccgt tttaatcaag atcctttgga      2340
     aaatttgttt gcttgcgttc gggcaaatgg tgggaactgc agaaacccca cagttcatca      2400
     attcaataca ataattgcta agttaatgtc cctaaaaatt cacaattttt cttcgaaatc      2460
     aaattgcgaa tccgataccg atattatgct tcctgtaaag ctggactcga taatttacga      2520
     gcctaatgaa aataaagttg caagcaatga tgaaactgtt ttattttccg aaattgagaa      2580
     ggaaaatcaa gcttattttg atagctccgc agatgatttt gttgcaccaa tatacccatt      2640
     gaattgacat aagtcgatat tttgtaggtt atattggtaa ggaatcaaac aactgcaaaa      2700
     gatgtgaagc gattatttta aaacagggag aaatgttaaa ttcgccttcc gaaattttta      2760
     ttgcagagaa aaatttctct aacgattcgg agtttggaaa gttaagttct ccttcagata      2820
     tattctttaa tgtatgtaaa atacatatca aggtttttgt aaacattttt aataacaata      2880
     aaaaacaaga acacattaaa cagtttataa tgagtaaatg tgtaacgtgt actggagaaa      2940
     gcgatttttc atcgtggttt gatgaaaatg atgagtgcta ttcacataat atgcttatgt      3000
     tagataaatt gattagagtt ttgctgtaca aacattgtaa gtggctagac tccccagcca      3060
     aatgtaaaac tagcaataag ctaaatatac ttcgtcataa ataaataaat acttggggat      3120
     ctttgaacag taaagcttta atctatttat agaacatttg catttaatat ggaaagcact      3180
     caccatattc atccaaatat aatgaaaaat cgttttctcg agtacacatt acgctttgat      3240
     tcaaagtgaa ttgcttattg tgttcatgtt tttattgtta ttagatattt ttttaaaacc      3300
     tttgatatgt aatttacaaa aaaaaatata tctataggag tgattaattc ctaaagtccc      3360
     agttggtaca tctaaaaaaa tgttcgtcta taaaaacatg atttaaaata ataaaaaaca      3420
     ttaaaaaact aaaaaaaata aaaaaaatat gaaattaaaa aaactaaaaa aaacctatca      3480
     aaaatataaa aaaaaagaaa aaagtacagc taaaaaaata taaaaaaaaa caaaactata      3540
     aaagaaaact aagttgaatc cagcctcaaa gtggacwcga acctggaact cgaacccawt      3600
     atccacgggc caccawcata cgcagagcgc cacagcccgt atatgaacca catgtgcaat      3660
     gcgtctttta gatcgattcc ttttcgtcaa cataattcaa gaatcgacaa ttgagacaag      3720
     agttgaattt ttgacttttt cccagtgcgg agtgggagag agaaggawgc aaagcaacgg      3780
     caaaaacaga ttcmcatgck tgtgagggtt gctttgcaaa aawtacgcct atgtacatct      3840
     tggtaktcta cggtctttg                                                   3859
//
ID   P-1_DTa     repbase;    DNA;    INV; 4336 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; P-1_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4336
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 7-bp TSDs. 99% identical to another partial
CC   repeat.
XX
FH   Key           Location/Qualifiers
FT   CDS           1420..3792
FT                 /product="P-1_DTa_1p"
FT                 /translation="MSSNLKKNFVKSGIKCCITKCKKSWRHFPNLKFFKFP
FT                 SSELILGQIWREKCNIRHADYDKDLRICENHFSDSFIGKRYLKKEAVPTLE
FT                 LEDLSQDEPDHFGEPLDEPQITDSICRNCKKIGLSNRFYQKRCSMLLRKIR
FT                 FLKSKLQRKRQVEGLRNEKNPKRLVDAIDSVKNISNESKTFCKLLVSSRPR
FT                 EYSSDVKFLAQNIYYTSQSSYSFLRDKLKLNLPHIKTVNRWAPLKFLQPGF
FT                 KNSSYELIKKMCLDLKSKNETDVVILMDEMALSKELRYNQSLDLIDGFECN
FT                 GFGRYKKIANETCVFLIKSIFSSWSTILNYFVSENGLNSNLLCDIIKENIN
FT                 ILNTFDIKVKAIVCDQGSLNRSCFTKLGATKENPLFLIGNRKIFCIYDFPH
FT                 LIKSLRNGLLTCDLYTPDGQVSFQVIKELWEKEDQQKTKMCPKLTRKHIFP
FT                 NSFEKMRVKYATQLFSKTTKAAIKSICDTVKFKTVSNDIAISTASFVEKVD
FT                 KIFDCMNSGTLYGDNLYRSAIQLNSESFSFIKYFLSYLKNVKFVDSKKRVH
FT                 FLDGMELSLKSVILLSEDLLKDSSKFFLMTKSLNQDCLENTFAVLRQKGGN
FT                 NNNPSVAELNVTIARIMTCKIIKSSSSSNCEATEIVDPTPCVILPNQDLEE
FT                 DSQFDIKTSDDIAQVCEKEHINNMAEDFFGSTNFNLQLVSERYFIGYVAFK
FT                 ILPLLDCKKCSTELRKPDEVISAPSEIFIFHKNYHSDTDFGNLVAPSQVLM
FT                 EASSKHISIFYKIFESQPDIYLRSMQKVYARVLLWGLQRS"
XX
SQ   Sequence 4336 BP; 1562 A; 669 C; 726 G; 1379 T; 0 other;
     caaagagtat acattatata gagagggcat aactctgact ttctgttcaa actgttgtcg        60
     gcaaggggaa aagggggtta tagggctttt ttttttttta gggcttgttg tatttttaga       120
     attcgtttat tgagtacaca atgcataagt gtaagtgggc tttgtgtgta tgtgtgcgag       180
     aacgtggcaa cacattttcg acaaaatttc atttttgtaa ttttgataat cgagggccaa       240
     caacttttaa aagtcgaata gggttttctg tcaaatactt tcaactcggt ctatggtcgt       300
     gctagttaaa gcgttgatca gcgatgtcga tgcgtgttcg atccccgcaa agggcagacg       360
     atttctaata tttttttttt tttatgtctc gaaatatata ttttttattt tatttaagct       420
     aaaaaataat taatgaatat aaaaaagttt aatttttaaa ataagaaaag agtgcaacag       480
     gactaaaaaa tcaaaacatt ttagttcgcg aaaatatttt ttgaatatct atctatttag       540
     gtgtagggtc ttgcaaaaaa aataaaaatt tttaatatag tttttcttgt agattaacat       600
     cttaagatta tacaaaaaag ttttaagtca atcaaaaaga actttggaag ttaggataaa       660
     aaaataattt ttgattttga acggcttaat aaaatattta aagtaagaaa ataaaaaata       720
     aaacttccca gggggcgggt tttttctatt ctttaatcga aatgtaaaag cagaatggaa       780
     attcgtcaat ttttggcgga gatacagtga acaccgcaaa acgtcttttt tttaagtgct       840
     ctatacgtgt tttacatgtg aaatgttttt ctcgaaagca cgttttttaa agtccgtgtt       900
     catcggcatt tctaatcggc tcaaccgatc gtttttaaat ttgtcgcata tttttctgca       960
     taaaaaaaac ccgccctcag ggaagcgttt ttttttttaa actttaaata tttttttaat      1020
     catttttggc ggtggtaaag aaattagtcg atgttattta aataagactc tataatatac      1080
     aaaaggtttg aatgaaatcc atcttaccag tttttataga ataaatcgca aagctagttt      1140
     atttttaaat gccaaagacc ctaccctaat aatagtgtta ccctttgatg gtcaaaaggt      1200
     aactacacaa acaagtgttg ccatcttaag caagccgttt agccgctagg gccacaaact      1260
     atacttttca cttaactatt ctttaccctt tttcccctat atcgatagtt cgttgtctaa      1320
     atttatgaac ataatctggt aacactaaaa tggaatcctt atatttgtat tttaataaat      1380
     gctcgccatc ggaagagtca tcatcatcaa catcaaacga tgagctcgaa cttaaaaaaa      1440
     aattttgtca aatccggcat aaaatgttgc attactaagt gcaaaaaatc ttggcgtcat      1500
     tttcctaact taaaattttt taaatttccc tcttctgaat taattttggg acagatatgg      1560
     agggaaaaat gtaatattag gcatgcggat tacgacaaag acttaagaat ttgcgaaaac      1620
     catttttctg actcctttat tgggaaacga tatttaaaaa aggaagcagt tcctacctta      1680
     gaattggaag acttatctca agatgaacct gaccattttg gtgaacctct ggatgaacca      1740
     caaattacag attccatatg cagaaattgt aaaaaaattg ggctatctaa tcgtttttat      1800
     caaaaaaggt gctctatgtt gctaagaaaa atacgatttc ttaaatcaaa acttcagcga      1860
     aaaaggcagg ttgagggact gagaaacgaa aaaaatccta agcgattggt tgatgctatt      1920
     gattcggtta agaacataag taacgaatca aaaacatttt gcaaattact tgtaagtagt      1980
     cgaccaagag aatattcctc cgatgtaaaa ttcttggctc aaaacattta ttatacgtcg      2040
     caatcatcct attcattttt aagggataaa ttgaaattaa atttacctca tataaaaacc      2100
     gtaaatcgat gggctccact taagtttctt caacctggat tcaaaaatag ctcgtatgaa      2160
     ttaatcaaaa aaatgtgctt agatttaaaa agtaaaaatg aaaccgatgt ggtcatttta      2220
     atggatgaaa tggctcttag taaagaatta cggtataacc agagcttaga tttaattgat      2280
     ggatttgaat gcaacggctt tggaagatat aaaaaaattg ctaacgagac atgcgtattt      2340
     ttgatcaaat ccatcttttc aagttggtct acaattttga actattttgt ttcagaaaat      2400
     gggttgaatt caaatttact ttgcgacatt attaaagaaa atattaatat tctaaatact      2460
     tttgatatta aggtaaaagc cattgtatgt gaccagggtt ctttgaaccg cagttgtttc      2520
     accaaacttg gagcaacaaa agaaaacccg ctttttttaa taggaaaccg gaaaattttt      2580
     tgtatttacg attttccgca tttaattaaa tcattaagaa atggacttct gacatgtgac      2640
     ctttatacgc cagacgggca ggttagtttt caagttatta aagaattgtg ggaaaaagaa      2700
     gatcagcaaa aaacaaaaat gtgtccaaaa ctaacaagaa aacacatttt tcctaactct      2760
     tttgaaaaaa tgagggttaa gtatgcgact caattattta gcaaaacaac aaaagcggct      2820
     ataaaatcta tttgtgacac tgttaaattt aagacagtct caaatgatat tgctatatcg      2880
     acagcatcgt ttgtagaaaa ggtagataaa atttttgatt gcatgaacag tggcacctta      2940
     tatggcgaca acttgtatcg ctctgctata cagctaaaca gcgaatcatt ttcctttatc      3000
     aagtattttc taagttatct taaaaatgtt aagtttgtag actcgaaaaa acgagtacat      3060
     tttttagatg gtatggaact atctttaaaa tctgtaattt tactgtccga agacctattg      3120
     aaggatagtt cgaaattttt tttaatgaca aagtcattaa atcaagattg tttggagaat      3180
     acgtttgccg ttttaaggca aaaaggaggt aataataaca atccgtctgt agcagagctt      3240
     aatgtgacta tagcaagaat aatgacttgc aaaattatta aatctagctc atcttccaac      3300
     tgcgaggcta ctgaaattgt agatcctact ccgtgcgtga ttctaccaaa tcaggacctt      3360
     gaagaggaca gtcaatttga tataaaaacc tcagatgaca tagctcaagt ttgtgaaaaa      3420
     gagcatatta ataatatggc tgaagacttt tttggatcta cgaactttaa tttgcaatta      3480
     gtatcagaaa gatattttat aggatatgtt gcatttaaaa tacttcctct attggattgt      3540
     aaaaaatgtt ccacagaatt aagaaagcct gatgaagtca tatcagctcc aagtgaaata      3600
     tttatatttc acaaaaacta ccactccgat acggactttg gaaaccttgt agctccatcg      3660
     caagtattaa tggaagcctc ttcgaagcac atatctatct tctataaaat ttttgagagt      3720
     cagccggaca tatatctcag aagtatgcaa aaggtctacg ccagagtact tctctgggga      3780
     ttgcagagat cataagctta aacttctaga ttttctttta ttagtgctaa ttagaaagca      3840
     ctgtatttgg ggccttgaaa aatgcagcaa aagcaaaaaa aaattaaaaa ttattggagg      3900
     aaaataattt tatttgtaac ctaaaaaaca taggaacaaa aatacattcc aaaataaaaa      3960
     ttaaaaatac tttaaaaaaa accaaaaaaa ttacaaaata ggaaaaaaca aaaaaaatac      4020
     aaaatagaaa aaatcaacaa aaaaattaca aaatagaaaa acaaaaccct cttagaaacc      4080
     aaaaaaaaaa aaaaaaaaag ttacccctcg caaaaatcga aattctacaa cgggattcga      4140
     tccccgtacc gcttagattg gtagtcagat gtcttatcca ctgggccaaa tggcaagcag      4200
     tgctggggcc gactagattc caagtagaat cgagcagtgc gggttctact gttaaaatgc      4260
     gggttccacc gctagaaccc gccatacgac agactccttt gtatgacatg tcctctctat      4320
     atatatatac tctttg                                                      4336
//
ID   P-1_DY      repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   13-JAN-2012 (Rel. 17.09, Created)
DT   13-JAN-2012 (Rel. 17.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila yakuba.
XX
KW   P; DNA transposon; Transposable Element; P-1_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4375
RA   Jurka J.;
RT   "DNA transposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1748-1748 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1189..3747
FT                 /product="P-1_DY_1p"
FT                 /translation="MAEKKRKNISGNKCSLPHCQKSRRDFPTLKLFSFPEK
FT                 DPTILMKWAEKCQFTEDFVASTSSLFLCHDHFSPDDIGVRYLRKGTIPDRN
FT                 LMTYNNNDEINFNAVRSPAQKRYRSQSPVEICRQCHKNTKTLKVFQKKYIS
FT                 YKKMSDERQIRIKMLRKENSNLKRKIIRLESKSEKNLLSQIDKINLTGNEK
FT                 ILAKMLLKEKKGTNTRWNDSEKLFAQSIYYRSTSTYTFLRDSLKLNFPSPS
FT                 SLQKWNSIKKLQPGDNECLYSALRETIKEMNESDKECILTCDEVAIKKNLT
FT                 YNVSVDIIDGLEHLIDRSNKMGSHICVFVIRGILKKWKFILNYFVPETNIK
FT                 GDCLKKLIYKNINIAENIGFKVRGVVYDQGGNNRKCTSLLEVTNEKPYFTL
FT                 NSKKYYMFYDIPHLFKSIRNNFLKANFETPDGRVDFDVIREVYELDQGSVT
FT                 RMTKLTRSHVNPTRFELMRVCLATQTLSHTVAAAIKACNQNKQFNRNSPEV
FT                 AASTAAFVQKVNDYFDCLNSRVLTDKNPMKCALQVNNTVWHKLKEMQEYLR
FT                 SVKYHGNNIYCLDGLIQTTEAIFGLVKDIFKDHTDHFFFLTSRVNQDPLEN
FT                 IFACVRAKGGNCRNPSVNEFNVIIAKLISLHIFKFSQNSNCESDDDVMLPI
FT                 EFDSIIYQPCIEKKEIQQQEYSVSFSEIVEGNERYFDQNIDNFLCNDIPIE
FT                 LTSSRYFVGYIAKGSSCDKCRSVILKETEHLTAPSELFIHEKNYSTESDFG
FT                 KLKAPSDLFFNICKIHIKVFENIFKNNKKQMCIQKFIVDQCIKCTNESSDF
FT                 SLWFHVENECYEHKIDLLKKLIKVLLFKHCKWTVIANRQKSQAKLSILSHK
FT                 "
XX
SQ   Sequence 4375 BP; 1591 A; 661 C; 711 G; 1412 T; 0 other;
     caaagacatt agaataacaa gatgcgtaac gccatacgat ttttttgcac acgatttttt        60
     cgtggcggct tttcaagtgg cttttcgctc tctcgaaatt ttattcaaaa gccagagagc       120
     ggagagctct agagccacca gctctcttgt acgcatacag cgacagctga ccactgtatt       180
     ggtgcacacg tacgcacatg cattgtaaaa atgacaaaat atgcccttca tcttagaagt       240
     tcttagactt taaatctata ttatttttta taaattgaca ccacttaaaa actctagtct       300
     tgcattgcct taacataaca attattcaaa tttaacacag aaataataat agcacaatct       360
     atgtacaaaa aaatgcataa taattttaaa agatgacttt atattagaat aattgtcatt       420
     agagtattca gcgtgcgacg tgtgaaaaat ataagaagac aatgattctt cggtgcttat       480
     gtccgcactt cgtgcttcaa gaaatcaatt ttgcaataaa cagattccat atttttattt       540
     attttataaa taatatttta ctttatgaat tatttttatg aaatatttat attttatatg       600
     taatttcttt tttttttttt aaattctttg ttttaaatta cagtagtttt taaaatttac       660
     tttgtatatg tttttattat ttattatagt tatttagtca aattactagt ataaaaatta       720
     ccaattttca atatttaaaa tgaaaataag attcagataa attatttttt tttattttgt       780
     tttgatgttt ttaaaaaagc gcgcaattat gggtgggaag aaaagcgcgc caattttttt       840
     gtttttcctt ttaatacgtt ttctttttct cttaatacgt ttgcttaaag ctgactatac       900
     gtagagctcc tcgatttttt ttaaatttcg ctttaaaatt gtgtttacaa tcaattaaag       960
     ttgtttggtt gcattgctaa agtacggaaa tatatgtgcg aattataaat tgcgattggt      1020
     agtgataaat aagagaaaat ttcagttaac tgaattaaac ttaatttcgt aattttacgc      1080
     gctaatacta cgtgctgctg ctactgctgc tttttgaaaa aggttagagc taaaatttat      1140
     tatttttaat atacaaatat ttgattggcc aattggaatt gcctggctat ggccgaaaag      1200
     aaaaggaaaa acataagtgg gaacaagtgc agtttaccac actgccaaaa atctaggcgc      1260
     gatttcccca cccttaaatt gtttagtttt cctgaaaagg atccaacaat tttaatgaaa      1320
     tgggcggaaa agtgccaatt tacggaggat tttgtggcaa gcacttcatc actgttttta      1380
     tgccacgatc atttctcccc agatgatatt ggggtaagat atctgaggaa aggaacaatt      1440
     ccagatcgaa acctaatgac atataataat aatgatgaaa ttaattttaa tgctgtaagg      1500
     tcgcctgcgc aaaaaagata tcgctcacag tcccctgttg aaatatgtcg tcagtgtcat      1560
     aaaaacacta aaacattaaa agtgtttcaa aaaaaatata tttcttataa gaaaatgtct      1620
     gatgaaagac aaattcgaat taaaatgctg aggaaagaaa actcaaattt aaaacgaaag      1680
     ataataaggt tggaatctaa gtccgaaaaa aacctacttt ctcaaattga taaaatcaat      1740
     ttaacgggaa atgagaaaat attggcaaaa atgcttctga aagaaaaaaa aggcacaaat      1800
     acaagatgga atgattccga aaaattgttt gctcagagca tatattacag gtcgacttcc      1860
     acatatacgt ttttaaggga ctctttaaaa ttaaattttc ccagtccatc atcattacaa      1920
     aagtggaaca gcattaaaaa attacagccg ggagacaacg aatgtttgta ctcagccctt      1980
     agagaaacca ttaaggaaat gaatgaatcg gataaagaat gcatattaac ttgtgatgaa      2040
     gtagcaataa aaaaaaactt aacatataat gtatcagttg atataataga tggactagag      2100
     catttaattg atcgctctaa taaaatggga agccacattt gcgtatttgt gattcggggt      2160
     attttaaaga aatggaaatt tatattgaac tatttcgtgc cggaaacaaa tataaaaggc      2220
     gattgcttaa aaaagcttat ttataaaaac attaatattg ctgaaaatat tgggttcaaa      2280
     gtaaggggtg ttgtttatga tcaaggaggt aacaacagaa aatgtacctc attacttgaa      2340
     gtcaccaatg agaaacctta ctttacctta aatagtaaga aatattatat gttttatgac      2400
     attccgcatc ttttcaagtc tattagaaat aattttctaa aagctaattt tgaaacccct      2460
     gacggacgag ttgactttga tgtcatccga gaggtttatg aattagatca gggatcagta      2520
     acgagaatga ctaaattaac aaggagtcac gttaatccaa ctagatttga gctaatgcgg      2580
     gtatgtttgg caactcagac acttagtcac acagttgcag cggcaattaa agcttgtaac      2640
     caaaacaagc aatttaatcg aaatagtccc gaagttgcag cttctactgc tgcatttgtc      2700
     caaaaagtta atgattactt tgattgcctg aatagcagag tattaactga caaaaacccc      2760
     atgaaatgcg cacttcaagt aaacaatact gtttggcata aactgaagga aatgcaggaa      2820
     tacctaagga gcgtaaaata tcacggtaat aatatatatt gtcttgatgg cttgatccaa      2880
     actactgaag ctatatttgg actcgtcaaa gatatattta aggaccacac ggaccacttt      2940
     ttctttttaa caagtagagt taaccaggat ccccttgaaa atatatttgc gtgcgttcga      3000
     gcaaaaggtg gtaactgcag aaatccttca gttaatgaat ttaatgtaat aattgccaag      3060
     cttatatccc tacacatttt taaattttcc caaaactcta attgcgaatc agatgatgat      3120
     gtgatgttgc caatagagtt cgattcgatt atatatcagc cttgcattga aaaaaaagaa      3180
     atacagcagc aagaatactc tgtatcattt tctgaaattg tagaaggcaa tgagaggtac      3240
     tttgaccaaa atatagataa ttttttgtgc aatgatatac ccattgaatt aacttcgagt      3300
     agatattttg ttggatatat tgcaaaggga tccagttgcg ataaatgcag atcggtaatt      3360
     ttaaaagaaa ccgagcattt aacagctcca tcagagcttt ttatacatga gaaaaactac      3420
     tcgacagaat cggactttgg aaaactaaag gcaccatctg atctattttt taatatttgt      3480
     aaaatacaca ttaaagtttt tgaaaatatt tttaaaaata ataaaaaaca aatgtgtata      3540
     caaaaattta ttgtagacca atgcattaag tgcacaaatg agagtagtga tttctcatta      3600
     tggtttcatg tagaaaatga atgttatgag cataaaatag atcttttaaa aaaacttata      3660
     aaagttttgc tttttaagca ttgcaagtgg actgttattg ctaatagaca aaaaagtcaa      3720
     gctaaactca gcattttatc tcataagtga aaaaaatata aacattcaaa taattgacga      3780
     ctttaaaaat taaattatat aattaaaaaa agaggcgata tataataaaa agcaatagtt      3840
     agaaaactag cttagttggg gaacatggaa atgttttaat gttaaacatt taaacatttc      3900
     aagtcgactc gaaggtcata taaatataag accccattac aattgtaatg gcctccccgt      3960
     ggtgttccct gggtaccgat tataatatat tacatattat taattatcaa tataaatata      4020
     aatatgtaaa cggtagctaa ttcgagcggc gcttttatca aacgaatatt aaaaaaaagt      4080
     ctttcaaacc ataatagtta cgaatcgaaa ttgaccaaaa cattaatcaa atttgtttct      4140
     tagatcaaaa ttgatttcgg cccgaaaatc gtcttctagc acaagcacgc acacatacac      4200
     actatctcct ttattgtttt tactcacaca agcaagtcaa ttctattttt agatttttac      4260
     gctctcaatt tttggcgagc gaaaagagag caatttcggc cgtcaccaaa aaagtggctg      4320
     catagtgcaa aaccaatgta tggccgttac gcatcttgtt attctaatgt ctttg           4375
//
ID   P-1_FoCa    repbase;    DNA;    INV; 4905 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4905
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2478-2478 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 8-bp TSDs. No clear TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1250..3937
FT                 /product="P-1_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MQLDVPQVPEEPMEVTPSTAKSIGTISCPSCANTFSV
FT                 TEIDGKLQGHCATDQLQPGEPNLPPSKSRKRLFHDPEDVDHPSSDVSLQVS
FT                 SPSFITVTPKSRRAVRNEHSYCASPGQAADELKAVKKQLADLRVKYHQLEL
FT                 KLERRDRAQSTHMDSLESLKALSNRQVDTLDARFPELLFHIVENEKRAFSI
FT                 KGKSGMEYDEEIKKFSATLHYHSPKAYRFLRHYLTLPHPSTIASWMKSSDC
FT                 GPGYNLDVISRLGEARLSDTNNVMTDVVMIIDEMAIRKALVWDSSKHCYVG
FT                 FVDYGTSDIDEPENPQLASNVLVCMIAGISGGWKCPIGYIYTDKVNGETQR
FT                 AFLHKAFVLLEEQQFNVWALISDGCTSNVSLFEGYGVSDSIIQGASFEIDG
FT                 DFPCSFPNPANPSKSVYAMYDVVHMMKLWRNLMGRSFEKGGRISLEDGRCV
FT                 SWGFVEALFELQTVEKIRAANKLGRYHVDFINHKMNVKLAVQSLSRSVVDA
FT                 ISFCRDSLDLQDFRGSQGTTYFMQLLDTTFDILNSRNCGQRGDKSPINIFN
FT                 FDHMTSILNEFCRTVYGMKYVGIREYKRSGKRAVYEKRLIDSDSRRAALGM
FT                 MISIKSVIAISKALLIREFNPFKFVLTYRFCQDPLELFFNTVRGRLGNNNN
FT                 PTVVEFRNIMKSIWHQNLLKSTNTGNCIAQIDEGEVPGGMLPLKRVRKLKV
FT                 LDMDDIDALDIIDLSALSDPHYSDFYRNCLAYISGNVVRVVGTKLKCEICA
FT                 ESLLNTDDDLLPSHFAKLIEAKDSGGLFTPCHSVFRIVELTDACYRQICKT
FT                 SGGLMKVSNLDRRISMMVTARCLETTIFPHLTHHVIDFDPLTETSHLSDLI
FT                 SRISMHFLKIRLFDHGNRFQKMREISTSVRHKFGKLTIFTEAH"
XX
SQ   Sequence 4905 BP; 1482 A; 893 C; 988 G; 1542 T; 0 other;
     caatgcctcg taacaccagt caatttggag atgaaataaa agtgaatgaa ggtgaggcct        60
     ctcgcggaga caggccataa gtagtagctc ctctcatatc atcatcatca aatccatcat       120
     catcatcact tgtttacaat ataaaagtct cgcaaataat tgcaaattat attttgaaat       180
     actgaaaaaa gtgtatctgg ccatcgcagc agtacacagt aagtacatag gtaatttttt       240
     atattttttt catattgaat tgattcattg cgtacattta tttgaatatt tattatttga       300
     tggtgtgcat ttgtaagtgg aaggaaagtc gaggttgtcc attcagtacg gtgcgatttt       360
     acgtttttaa aatttagttt aaaacagttt tcaatgagta aaaactagag tcttttctgt       420
     acaccgtaat ggatggatgg cctcgcaagc gagctaggat acggccggtc ttacggagca       480
     ggggccgaat tcagtgctag gttaccatgg ttaccaaggt gcatattgac tttaagccca       540
     gctaagacta attttaccta cgtttcaact ggaatttaat ttcatgaagc catttctatt       600
     attttacgct acaaattcat tgacaccgaa agtaagcatt atcacccatt ttggaaaaat       660
     aagatcgaat tgtaattaaa attccgaagt ctttttagac caaagtagga tacaatctct       720
     aattttacgc gaatgtagtt gaataaacaa ataagtttca taaatcttaa acgtctaaat       780
     cataggtcca acgtgaacaa tggcctgtgt caaacagcgc acttgcgttg taccttcttg       840
     taaggtggtc gatcggaatc gggagataga tttatcatgg catttgtaag tccaacctga       900
     actccatttt aatgaaatta gttaaatatt acaaaactat aaattaacag gttcccaaat       960
     tcggccatgc atcagaaaat gcgaattaac tggatcacca taattcgaaa ccttagaaat      1020
     gatgaggcgt gggaacctac tcgtgagtcc aggatatgta gtcgtcactt cctaacagaa      1080
     gaattatata cggccggtat tcgacgtagg ctcagaggac aacctgtccc aactctcttt      1140
     cttcacgatg ctacaatgag taagtcactt ggcgagaact ttagcattgc tttcgatcac      1200
     cctctcctaa taatttgttt gactagcagc cgatgtaaat tctaccggaa tgcaattgga      1260
     cgtcccacaa gttccagaag aaccgatgga ggtcacacca tcaacagcta agtccattgg      1320
     aaccatctct tgcccttcat gtgccaacac attttctgtg actgagatcg atgggaaact      1380
     tcagggacat tgtgccacgg atcagctcca acctggtgaa ccaaatcttc cccctagtaa      1440
     gtccagaaag cgcctttttc atgatccaga agatgtcgac cacccttcat cagacgtttc      1500
     attgcaagtc tcatcaccct catttattac tgtcacccca aagtcaaggc gagctgttag      1560
     gaacgagcat agttattgcg catctccagg acaggcagca gacgaactta aagctgtaaa      1620
     aaaacaactg gcagacctta gagttaagta tcatcaatta gagcttaaac ttgaacgtcg      1680
     agatcgtgct cagtcgactc acatggatag tctagaaagc cttaaagcat taagtaatcg      1740
     gcaggtagat actttggatg ctaggtttcc tgagttactt ttccatatcg tagaaaatga      1800
     aaaacgagcc tttagtatta aaggaaagag tggaatggag tatgatgagg agataaaaaa      1860
     attctcggct acacttcatt atcactctcc caaagcgtat cgttttttgc gtcactactt      1920
     aactttgccg cacccatcaa ctattgcttc ctggatgaaa tcctcagatt gtggcccggg      1980
     gtataattta gacgttatct ctcgattagg cgaggctaga ctttctgaca caaataatgt      2040
     catgacagat gtagtaatga tcatagacga aatggctata aggaaagctt tagtttggga      2100
     ttcatctaag cattgctatg ttggcttcgt tgattacggc acttctgaca ttgatgagcc      2160
     tgaaaaccct caattggcta gcaatgtttt agtatgcatg attgctggga tatctggtgg      2220
     ctggaaatgt ccgatagggt acatatacac ggataaagtt aatggggaga ctcagagggc      2280
     atttctgcat aaagcttttg tgttactgga ggagcagcaa tttaatgttt gggcgctaat      2340
     ttctgatggc tgtacgtcta acgtatcact gtttgaaggg tatggcgtat ctgatagcat      2400
     aatacaaggg gcttctttcg aaatcgatgg tgactttcct tgcagttttc caaatcctgc      2460
     caatccttct aaaagcgtat acgcaatgta tgacgtagtt catatgatga aattatggcg      2520
     caatttgatg ggtcgctctt tcgaaaaagg tggtcgtatc tcattggagg atggtcgttg      2580
     tgtctcttgg ggatttgttg aagctctttt cgaactccag acagttgaga aaattcgagc      2640
     agccaataaa ctaggcaggt atcatgtaga ttttataaat cataaaatga acgtaaaact      2700
     agctgtccaa agtcttagca gatctgtagt tgatgctatt tcattttgca gagactcgtt      2760
     agatttgcaa gattttagag gatctcaagg aactacatat ttcatgcagt tattagacac      2820
     gactttcgat attttaaact cgaggaactg tggtcagaga ggagacaagt caccaataaa      2880
     tatttttaac tttgaccata tgacttccat cttaaacgaa ttctgtagga ctgtgtacgg      2940
     aatgaaatac gtgggaatta gagagtataa gaggtcaggt aaacgtgcgg tgtacgagaa      3000
     aaggctgata gatagtgatt caagacgggc tgcattagga atgatgatat ccatcaagtc      3060
     agtcattgct attagcaaag ctcttctgat cagagagttt aatcctttca aattcgtgct      3120
     gacgtatcgg ttttgccaag atcctttaga actttttttt aataccgtga ggggaagatt      3180
     aggtaataac aacaatccaa ctgtggtcga gtttaggaac attatgaaat ccatctggca      3240
     ccaaaatctc ctcaagtcca ccaacacggg taactgcatt gcgcagattg acgaaggtga      3300
     agttcctggt ggtatgttgc ctctcaaacg tgttcggaaa ttgaaggtgc tcgatatgga      3360
     tgacattgat gcgttggaca ttatagatct tagcgccctc tctgatccac attattcaga      3420
     tttttatagg aattgtctag cttatattag cgggaatgtg gtcagagtag ttgggacgaa      3480
     gttgaagtgt gagatttgtg ccgaatcact tcttaacaca gacgatgatc ttcttccttc      3540
     tcactttgct aagctaattg aggctaagga tagcggaggc ttattcaccc cttgtcattc      3600
     cgttttccgt atagttgagc tgactgatgc atgttatcgg caaatttgca aaacttctgg      3660
     tggtttaatg aaggtatcta acctagaccg taggatttct atgatggtta ctgcacgatg      3720
     cttagaaacc acaattttcc cacatcttac gcatcacgta attgactttg atccattaac      3780
     tgaaactagt catttgtctg atctcatttc tcgaatttcg atgcattttt tgaaaattcg      3840
     cttatttgat catggaaata ggtttcaaaa gatgcgagaa atttcaactt ctgtacggca      3900
     caaatttggc aaattaacaa tatttaccga agcgcattag aattatctta cagatgctcc      3960
     ttataatttt taagaatata ttttaagtat ttacaactat ttggaattat ttaaatgtat      4020
     tttaagttgt atttagcatt atttgggatt acctagttta attgaagttg tctttagaat      4080
     tatgttagag ttaaaatagt taaaaattat gtaaacatta tattagaata atttactgat      4140
     tatttttaaa ttgttctacg tgactgattc acgttaagat gccttaagag acttgtatct      4200
     cactaaaaat tgttaatcaa taaataaatg ctgtttcata gttggactgt ggattctgat      4260
     tatataactt cactatttgc acataaaaaa tattaaatag aatgcataat gttttattct      4320
     cacaggtcac catgcctttg catcccggcg atttggaaat tgcggaggca atttttcgat      4380
     tgttcgatca taaactgatc gattacgtcg tgcgtcaaaa ttacaaatta catgtaaatc      4440
     ataatgcata atagattgtt attaatgaaa tttttgtgta caggtcctga cggagcggga      4500
     agagcgagtt gccctccagg caattccatt gcacctccga gagatggcga gggtttggtg      4560
     ctacgcatct atttgccact ccaagcgtta taacgcaact tcagctttta aaagcttgtg      4620
     tactaatcgt ttgtacatga gattagcgaa gttgcaaaaa tttctgcgta tttatggaat      4680
     taatgttaat ttttttaaag aaatattatt aaataagttc caaaattaat caagttaatt      4740
     atatgatgat tttattgcac ctcgtactga atttgtcgta agctggtctt aactaagtga      4800
     ttttcaactc gtttactgaa ttcagccccg aatacaggcc aaatccgaca tgttgctctg      4860
     gcaacaaagt actgaagccg atttatccct tcctttagat ccatg                      4905
//
ID   P-1_LHu     repbase;    DNA;    INV; 4310 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   P-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4310
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 378-378 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1452..3740
FT                 /product="P-1_LHu_1p"
FT                 /translation="MDICMLNSNVIKTATEQERREGELLKKIHILQKRLHR
FT                 REKTIKTTRNIVETFKTNHDTNTDLEKILLNNFSDSKLQIILNEYHNNNVV
FT                 STQRRYTQEMKQFALTLYFYSPKGYDTLRETLCLPHPSMLRKWLGNYNCEV
FT                 GFLSEIFKYLETEIPQKQFLKDVALIFDSMAIRTQIIHDIKTDKNRGYVDY
FT                 GDILNIDSQDLATEVLVFQIVSYTNKFKCPIAYFFINKINANMQAQLIKCA
FT                 IEKLYEVGVIVRSLTCDGTKTNLSTFKLLGCNLSTDNIKTFFKHPQNKSNV
FT                 YCITDPCHMVKLARNALAETNISSKAGLISFSYIKKLHTIQEEADLKLANK
FT                 LSYNHVNFSNKKMNVLLAAQVLSSGVADAIDFLRTSGDKNFINSEATTEFI
FT                 RIIDRLFDTMNTRNGFGTGFKSPMTINNLKLVKQFFDDSITYISSLKINDI
FT                 NIFVHSRSTFALGFVINCQSFYNLAHDLLYKEVNALRYFLAYKCSQDHLEL
FT                 FFSCIRGRGGWNDNPNALQFKWALRQLLFRNSVRASFNANCLSDNYEVPSI
FT                 LKFRTPKRTIHDDNCININEEELQALSNLIDNVNLSFLQQNILYYITGSII
FT                 RTLLTEIHCHHCINILIERNMERCNTFHTYAININKYNSFTSFVNRGKLYY
FT                 PSNVAFQIVQTTEKAFKIELASGHIQNNSFKQNIVIRVMQLLLPKIKQLFI
FT                 PEHPLLDNTGSEDLHEIQIIKVIAMKYIKLRILTFCKKMTERHLKERGTKR
FT                 AKLHKTILFSHV"
XX
SQ   Sequence 4310 BP; 1620 A; 553 C; 605 G; 1532 T; 0 other;
     cattgaacta tataccatac tggaaggagc acaggctacc ccctccattc gacaaaacgg        60
     tcagacaagg cggcgactcg gtaccggatt tctctttcta tctcgtctac tctcttagct       120
     gaaaacattc gccttgcgca cacatataca ccatttatat acatatagga caatttgtta       180
     tttatctgtc aagcatggga aaaatttgtg gcctaaaaaa ttgtttaaac agcagcgata       240
     gcagtatgga attttctttt cacgggtatt aaaattaaaa ctgataaata tattatttat       300
     attttataat gtataaatat atatagatat atatgtataa ttatgtgcgc gtgtgcatgt       360
     gcttgtgtat gtacattttt atagtattca ataaatattt ttcagctttc ctatgaaaga       420
     taataaaaaa taaaaatgga taatgtctat accaaaagat ttgttggact tgcccctaaa       480
     acagcacaca tatatatgta gcaagcattt ttcacatgat tcctatgtat tacgacagca       540
     agaaatgtat tattcaaaga tgcaagtccg tcaatttttt atataacatc tagcaatgat       600
     gcagataaag agaatattga ggtatggttt attgaaaata ttttaattta ctattgtaaa       660
     aataaatttt ttcccagaca ctgtctataa cagacacatt ttcaggatct ctaggatctt       720
     cttccaattt tagacatgca ttctgtcgga tttaatatta taaaatacaa taatacatat       780
     agtagtattt atatatatta tatatatata tatatatata tatatatata tatatatata       840
     tatatatata tatatatata tatatatata tatgtatgta taatcaatgt gtgtatataa       900
     ttgaaatcga ttgtgtatat atatatattt gaatctgatt aatcgggatg tatctacgac       960
     tcaattcagc gattgtttca attatctgaa tattgatata tacacaattt tatgtatatt      1020
     atatatattt agttacgctt ttatacttgt acatattgta agttggtaat ataattagaa      1080
     gcataaaagt aaatatattt gtcattaaag ttaatttgtc attcattgca tctcacaata      1140
     gactgctaca tttgatgtca ctgagaaatg aacaatattg agaatataca cactatagtt      1200
     tatccaaaga gactggagtt tattttatgt tacaaatgct ttgaaatgcg ttttttctct      1260
     ttcttttcaa taaatagaaa agcagtgaaa gaacgcttta aggcatttgt aacattacgt      1320
     acagatgtgt gtgatagctt taaatatata tcttaatatt tttaatatgt gcgtgtgtgt      1380
     ataaaatatt tatttgattt tggtagagaa aaacaactaa aaaaatatta gataaacaag      1440
     tggatgaaca aatggatatt tgcatgctta attctaatgt aataaagacg gcaacagaac      1500
     aagagcgaag agaaggtgaa ttattgaaaa aaatacacat tttacaaaaa cgtttacatc      1560
     gtcgagaaaa aactattaaa acaacacgga acattgttga aacgtttaaa acgaatcatg      1620
     acacaaacac agatctggaa aaaatattac tgaataattt tagtgattct aagttacaaa      1680
     ttattttaaa tgaatatcat aataataatg ttgtttcaac gcaaagacga tacacgcaag      1740
     aaatgaaaca atttgcatta acactatatt tttatagtcc taaaggatat gacacgcttc      1800
     gagaaacatt gtgtttacca catccgtcga tgttacgaaa atggcttgga aattataatt      1860
     gtgaagtagg ttttctttcg gaaattttta aatatttaga aacagaaata ccacaaaagc      1920
     aatttttgaa agatgtagct ttaatatttg actcaatggc aattcgtact caaattatac      1980
     atgatataaa aaccgataaa aacagaggct atgttgatta tggtgatatc ttaaatattg      2040
     attctcaaga tttagctaca gaagtattag tttttcaaat agtttcatat acaaataagt      2100
     ttaaatgccc aattgcatat ttttttatta acaaaataaa tgcaaatatg caagcacaac      2160
     taataaaatg tgcaattgaa aaattatatg aagtaggcgt aatagtacgt tcattaacat      2220
     gtgatggaac aaaaacaaac ctttcaacgt ttaaattact tggatgtaat ctatctactg      2280
     acaatataaa aacctttttt aaacatccac aaaataagtc aaatgtttat tgtataacgg      2340
     atccatgtca catggttaaa ttagcacgta atgccttagc agaaacaaat atttcatcta      2400
     aagctggctt aatctcattc agttatataa aaaaactgca tacaattcaa gaagaagcag      2460
     atttaaaact tgctaataaa ttaagttata atcacgttaa tttttcaaat aagaaaatga      2520
     atgtactttt ggcagcacag gtattaagta gtggtgttgc tgatgcaata gattttctta      2580
     gaacaagtgg agataaaaac tttataaata gtgaagcaac aacagaattt attcgtatca      2640
     ttgatagatt atttgacacg atgaatacaa gaaacggttt tggtacaggt tttaagtcac      2700
     ctatgacgat taacaactta aaattagtca aacaattttt tgatgatagc atcacataca      2760
     tttcgagttt aaaaataaat gacattaata tttttgtcca ttctcgaagt acttttgcac      2820
     taggatttgt tataaattgt caaagttttt acaatttagc acacgatcta ttgtacaaag      2880
     aagtaaacgc tttacgatat tttttagcat ataagtgttc tcaagatcat ttagaattat      2940
     ttttttcatg cataagagga cgtggtggat ggaatgataa tcctaatgca ttacagttta      3000
     aatgggcttt acggcaactt ttgtttcgta attctgtacg tgctagtttt aatgcaaatt      3060
     gtttaagtga caattacgaa gtaccctcta ttttaaaatt tcgaacgcca aaacgtacaa      3120
     tacatgatga taattgtata aatataaatg aagaagaatt gcaagcccta tcaaatttaa      3180
     tagataatgt aaatttatcg tttcttcaac aaaatatttt atattatata acgggttcta      3240
     ttattcgtac acttcttact gaaatacatt gccatcattg cataaatatt ttaatagaaa      3300
     gaaatatgga aagatgtaat acatttcata cttatgcaat taatatcaat aaatacaatt      3360
     cattcacttc ttttgttaat cgaggaaaac tttattatcc gtcaaatgta gcgtttcaaa      3420
     ttgttcaaac tacagaaaaa gctttcaaaa tagaattagc ttcaggtcac atacagaata      3480
     attcttttaa acaaaatatt gtaatcagag tcatgcaatt attattgcct aaaataaaac      3540
     aattatttat acctgaacat cctcttcttg ataatacggg aagtgaagat ttgcatgaaa      3600
     ttcaaataat taaagtaata gcaatgaagt atataaaact tcgcattttg actttttgta      3660
     aaaaaatgac agaacgacat ttaaaagaac gtggaacaaa acgcgcaaaa ttgcataaaa      3720
     ctattttatt tagtcacgta taatcgcttc ttgttcatct ttattttgct tcgtttttct      3780
     ttagtcacaa tgtgcattgt gcaatatttt aatttgaggc aattgtgatt tgttatttga      3840
     ttttatttta attatatatt ttattttaaa tgtatattaa ttttgtttta ctttaatttc      3900
     aattgtgatt taattgtgat attataatta ataaatgtaa caaaattata atatttaaac      3960
     aaataaaata tagaagtgtt taaatgtatt aagtttttta tttaatatat atgtatacat      4020
     acatgttata tattaacaat ttttattaaa caatatacat tgtttttatt aaataatttt      4080
     ataatataaa aataaatttc aacatataaa ttttataatt atccaacaat ttcattttaa      4140
     agcataaaat tttattttta tgaaggcgaa tgtttgtaga actaatagta gctgtgaaca      4200
     cgtgaccgag actgttggtt agatagagag atccgggtcc aaacagctat ctccatctga      4260
     ccggtcgaga acaaaggcgt gctcgttcca gtatggtata tagttcaatg                 4310
//
ID   P-1_LMi     repbase;    DNA;    INV; 2635 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.11, Created)
DT   28-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2635
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3018-3018 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus. 3'-end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(294..1355,1694..2098,2085..2339,2311..2634)
FT                 /product="P-1_LMi_1p"
FT                 /translation="MPGCAVTGCYSYNRNTKGTDVMYHSFPRNETLQKLWL
FT                 SKCCRKDNVNVANARICSRHFAESDYVRDLQSELLNLPRKRVLKPDAVPSC
FT                 NLPCSSVIVSXLPVTEDRSKRYXKRELRKRSLETLRKLSPIKKHLDKGIFT
FT                 DEQLSPDTDKVTLMNTIAVLERRNAVLRNKYVRLRARNKNLRSQLLRTRRL
FT                 LREEKIIRELLCLMNHSCVGKIFSPTQIKRLLNDSKRVRWSKEDICKSITL
FT                 RAISQKCYNFLRKKIGYPLPAVSTLRAWINRSFSCSPGILKDVLTMMKMQA
FT                 ETLTDRERVCVLSFDEMNIDSRICYDQQEDRVLGPHSNVLVVMVRGLFASW
FT                 KQPVYFDFELVGQRPAEGAFSSRIAVSHTSQAVRYLMPEEGHASDFIQLVD
FT                 DTFDILNSRNCESKKPLACGFGIHYEAQEKSAQVLQCCERCGIKHLLPFQK
FT                 GFMKSIRSLSGLFSDLRQYDVKYILTARLNQDCLENFLVRGLLQGAYSSRC
FT                 EKQDRLLLLSANAFDIPISNASFXEPDKEGTFVTAAMFSGILPEMSEALSM
FT                 VEGQKEIGGIEMTAENMKFFSIRGFGLSSSASAGSDCSVEGFQYLAGYIAH
FT                 RCRQYDRTLATPTEELMSIPEDQSISWLRMISRGNLLVPSESWLETISQFE
FT                 LTFAQLHGSDNLSREKGIITSCVQHLVSGSPMC"
XX
SQ   Sequence 2635 BP; 786 A; 482 C; 625 G; 739 T; 3 other;
     cagggggcgc agtaagcaat tgcgcagtaa ggtacacgtt ttctctgttc tgcgcatgac        60
     gtcagcgtgg aaacagccgc gccaaacagt acattgtgga aataggtgga agcgttgcgt       120
     gtgtgatagt ttttttctgt atttggtgga ttacttcgag ttcttccctc gtaagtacac       180
     agtcaatagt ggaaacttta atgaattcgg gagtgttatg gtttttgctg taactgcata       240
     gagaaacgat tccaaacttc cgaacaagtg agcgtgtgta aactaagttt tacatgccgg       300
     gctgtgctgt tacaggctgt tattcctaca accggaacac aaagggaact gacgtaatgt       360
     atcatagttt tccgcgtaat gaaacattac aaaaactatg gctgtccaaa tgttgtagga       420
     aagacaatgt aaatgttgcg aatgcacgaa tatgctctcg ccatttcgca gaatcagatt       480
     acgtgaggga tttacagtct gagttgctca atttgccgcg aaaaagagtg cttaagccag       540
     acgcagttcc gtcgtgcaat ttgccatgca gtagtgtgat tgtcagtgas ttacctgtaa       600
     cagaagacag aagcaaacgg tatgamaaac gcgaactacg taaaagatct ctcgagacgc       660
     tacggaaact gtcaccaatt aagaaacatc ttgataaggg aatatttacg gatgaacagc       720
     tttctcctga cacagataaa gttactttga tgaatacaat agcggtgtta gaaagaagga       780
     atgctgttct tagaaacaag tatgtccgac ttcgagcgcg taataaaaat cttcggagtc       840
     agctgttaag aacacgacga cttctgcgcg aggaaaaaat aataagggag ttgctgtgtc       900
     tgatgaatca ctcgtgtgtt gggaaaatat tttcacccac tcaaatcaaa agacttttaa       960
     atgattcaaa aagggttcga tggagtaaag aggacatatg taaatccatt actctgcgtg      1020
     ctatatcgca aaaatgttac aattttctga ggaaaaaaat tgggtatcct ctaccggcag      1080
     tgtcgacatt gagggcgtgg ataaaccgct cgtttagttg cagtcctggc attttgaaag      1140
     atgttttaac tatgatgaaa atgcaggctg aaacattgac cgatagggaa cgagtctgcg      1200
     ttttgtcctt cgatgaaatg aacattgata gcaggatttg ttatgatcaa caagaagaca      1260
     gggtgttagg tccccacagt aatgttttag ttgttatggt tcgtgggctg tttgcaagtt      1320
     ggaaacaacc tgtttatttt gattttgaac tcgtatgaca gctgtcctcc tgaacgaaat      1380
     tattctcgcc ttagccaata atgcatatga agttgtagct tgtgttgcag acatgggaac      1440
     aaaaaacatt tctgtttgga acgagcttaa tgtgacgcac aaaaacagtt gtttccagca      1500
     tcctagcaca cgaaacgtgt gtgggtattc gcagacgttc cacatttgct gaggttgtta      1560
     ggaatcattt gctagatgac ggaattattc tagaaaataa ggcagtaacg aaaacagttt      1620
     tcgagagatt ttggctttag acagtgggga gatgaaaatg tgtcccaagt aactccgcaa      1680
     atatcactgt taagggcaga gaccggcaga gggtgcgttt agcagccgaa ttgctgtctc      1740
     acacacttct caggccgttc ggtatttaat gccagaagaa ggacacgcta gtgatttcat      1800
     acaactggtc gatgatactt tcgacatcct taattcaagg aattgcgaaa gtaagaaacc      1860
     gcttgcatgt ggattcggaa ttcattacga agcacaagag aagtctgcgc aagttttaca      1920
     atgctgtgag agatgcggga tcaagcattt gttacctttt cagaaaggat tcatgaaatc      1980
     tattcgctca ctttcaggtc tattcagtga cttacgacaa tacgatgtta aatatattct      2040
     tactgcccga ctgaatcagg actgcctgga aaattttctt gtaaggggcc tactccagta      2100
     gatgtgaaaa acaggatagg ctattattgt taagtgccaa tgcatttgat attcctatat      2160
     ctaatgcttc ttttkttgaa ccagataaag aagggacatt tgtgactgca gcaatgttca      2220
     gcggcattct tcccgaaatg tctgaagcac tatcaatggt tgaagggcag aaagaaattg      2280
     gggggataga aatgactgca gaaaatatga agttcttcag catccgcggg ttcggactgt      2340
     agtgtggagg gatttcagta tcttgctgga tatattgctc atcggtgccg acagtatgac      2400
     agaacattag ccacacctac tgaagagctc atgtcaatcc ctgaagacca atctatcagc      2460
     tggttgcgca tgatttcaag aggaaattta cttgtgcctt cagaatcgtg gctcgagaca      2520
     ataagccaat tcgagctgac ttttgctcaa cttcatggca gtgacaattt gtccagagaa      2580
     aagggcataa ttactagttg tgtgcaacac ttggtgagcg gttccccaat gtgca           2635
//
ID   P-1_PBa     repbase;    DNA;    INV; 3292 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   P DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3292
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 640-640 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. TSDs are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(729..914,1040..1234,1318..1555,1723..3041)
FT                 /product="P-1_PBa_1p"
FT                 /translation="MQNRLYPVDFDDEEFITENVQCHEHYEQIRILKEKVA
FT                 KQNAKIQKLRKLLNVSRLKVKTKHKKKEAYNDEEKQLAQKMHYTSPSLYRK
FT                 MREEFGFILPSESTIKTWFSVIDLWPGICSIIFHCLKAKKRQKIEGFEDLG
FT                 SLGCNAAVATSALVFMVRGLLHNWKQPVAYFITGGTLNNVLLSSALDKVIE
FT                 AVLDXGLKLRAIVCDQVASWNDVRLLWQLENGKATRAACKLSEKHVNPNHF
FT                 DRMKCRLALQVFSRRVSAALLTAGITGGIDTETVMHTAEFFTILNNSFDSL
FT                 NSRNCNDPNPNACALSEIRLYVENDLKQLLNDCSKWRTITDKGLKIPPCFE
FT                 GLQISVTSILQLWDDLKRDEIKFFMTSRVNQDPLENLFSMIRTYGGTYNQN
FT                 PSAKAFRLLLQKNIVLNLCKSTQSSNCLDDEDEILFPNMNTSTSLHRITFD
FT                 TITSINASNDYENDDEQNVPINVKKIVIDASYTNNETLEASAIEYFAGFVA
FT                 KKCVAKSNCDQCHISFINTNHELTDARQILIYFRAYETSDDEELGHLCVPT
FT                 EEFSFVFRLMNAVFDAGYPNMRGNYNILDTLFPFMIQAVHTKYPNWFQHET
FT                 CSIHRKNLAYYMMKIKIHKDLLWLGERLRLSKSRHKPTQKLKNIQSI*"
XX
SQ   Sequence 3292 BP; 1216 A; 464 C; 568 G; 1040 T; 4 other;
     ataatatata atatataatg tataatatat gatatgtaat atataatata tattatatat        60
     aaatatgaat taattactta tgtaattgat agcctgtgat atgcttaatt aaatcaaagt       120
     atttttttat taattatata acaacaacat ttttttgtgt agacatcgcg cagacgtaac       180
     cgccgaatgg atatacctat atatatcgcg cttgtcactt gtctacgatt tsttcgtaac       240
     ggcgacatta actacagtga gcaacgagta gtctgttgga aataatagta tttcgataac       300
     attgtgagtc cattagaatt aacagtgttt cggtaacatt gtgttgaaca actattamaa       360
     gtgtattgag gtgttccgtg tagtgttacg tagtgcaatg agcattgaga actacgtctg       420
     aaagcaagta agtttttaac attttcataa tcttaagaca cgcaaaatgt cgagtatttg       480
     taaaggcagg aaaactcata gtagtacctg catttataaa aactgcggta ttaatagtag       540
     acacaataca ttaaatgttc gattctatcg tctgcctatt gaagatagag aacgattaat       600
     aacatggtta gtaaatagcg gttgtgacga tttagcggaa gaatccgatg caaaattgcg       660
     aaagttaaga atatgtagta ggcattttcc aataaatatg atatatccaa agggaagatt       720
     aaaaaagaat gcagaaccgt ctatatcctg tcgatttcga tgatgaggaa tttattactg       780
     agaacgtaca atgtcacgag cattatgagc aaatacgtat tttgaaagaa aaagtagcma       840
     agcaaaatgc aaaaatacaa aaattaagaa aacttcttaa tgtatcgaga ttgaaagtta       900
     aaacaaaaca taaggtaata actcgtttac gaaaaaaaat aatcacgggt gatttacaga       960
     cacgagtatt ttaaacgcct tgtttcgacg agttcaaggc tttgtattaa catttttaat      1020
     aatgcaactt tttcacaaga aaaaagaggc ttataatgac gaagaaaaac aattagctca      1080
     aaaaatgcat tatacttcgc caagtttata tagaaaaatg cgcgaagaat tcggttttat      1140
     attaccttca gaaagtacaa ttaaaacatg gtttagtgta atagatttat ggcctggaat      1200
     ttgtagtatc atatttcatt gtttaaaagc aaaagtaaat tgcatggata gtagcgaacg      1260
     caattgcgtt ttactttttg atgaaatgaa aataaaaaaa gttttgattt taacgagaaa      1320
     cggcaaaaaa tagaaggttt tgaggatttg ggatcactag gatgtaacgc ggcagtcgcg      1380
     acaagtgctt tagtttttat ggttcgaggt ttattacata attggaagca accagtagca      1440
     tattttataa ctggtggcac tttaaataat gttcttttat catctgcatt agacaaagtt      1500
     atagaagcag tattagatwc aggattaaaa ttgcgtgcta ttgtttgtga tcaaggtact      1560
     aataatcaaa gtgctataaa atataaaatt tctatacatc gtccttattt tatgcatgga      1620
     caagaaaaaa tatatgcaat ttttgatata ccacatattt atattataaa tctataagaa      1680
     atcaactctt gaaatataat gttatgtacg atgacaataa agtagcatca tggaacgatg      1740
     tacgattatt atggcaattg gaaaatggca aagcgacaag agcggcttgc aaattatcag      1800
     aaaaacatgt aaatcctaat cattttgaca gaatgaaatg ccgtttagct ttacaagttt      1860
     ttagccgcag agtttcagct gcattattaa ctgcaggaat aacaggagga attgatactg      1920
     aaactgttat gcatactgct gaatttttta caattcttaa taacagtttc gattctttaa      1980
     acagtcgcaa ttgtaatgat ccaaatccaa atgcttgtgc tctatcagaa attcgacttt      2040
     atgtggaaaa tgatctaaaa caattattaa atgattgttc taagtggcgc actattacag      2100
     ataaaggtct caaaataccg ccatgttttg aaggattaca aattagtgtt acgtctattt      2160
     tacaattgtg ggacgattta aaacgcgacg aaattaaatt tttcatgact tctagagtta      2220
     atcaagatcc gttggaaaat cttttttcca tgatacgtac atatggcgga acatacaatc      2280
     aaaatccgag tgcaaaagcc tttcgattat tgttacaaaa aaacatagta ttaaatttgt      2340
     gtaagtctac acaatcttca aattgcttag atgatgaaga tgaaatttta tttccaaata      2400
     tgaatacatc tacatctctt catcgaataa cattcgatac aatcacatca attaatgcat      2460
     ctaacgatta tgaaaatgat gatgaacaaa atgtaccgat aaatgttaaa aaaattgtta      2520
     ttgacgcatc atatacaaat aatgaaactc tagaagcgtc tgctattgaa tattttgcag      2580
     gatttgttgc taaaaaatgt gttgcaaaat caaattgtga tcaatgtcat atctcattta      2640
     ttaatacaaa tcacgaactg acagacgcaa gacaaatatt aatatatttt cgagcatatg      2700
     agaccagtga tgacgaggaa ttaggacatc tatgtgtacc tacagaagaa ttttcatttg      2760
     tatttcgatt aatgaatgca gtatttgatg caggttatcc taatatgaga ggaaattata      2820
     acatattaga tactctattt ccattcatga tacaagctgt acacacaaag tatccaaatt      2880
     ggtttcagca tgaaacttgt agcattcatc gaaaaaattt ggcatattat atgatgaaaa      2940
     ttaagataca taaagattta ctttggttag gagagcgatt aagactttca aaaagtcgtc      3000
     ataaacctac acagaaatta aaaaatatac aaagcattta aaaatttttt aacatttaga      3060
     tacttatgaa tatactcgcg gcagtacatg cggaacgagt acacacagaa ggattgcgac      3120
     tctttcagcg gtacaatcta aaaacatttc tttacattta ctcgcggcac tttgtgccaa      3180
     tcgagtaaga agatcgcggc tttttgagcg gaacgatcta caaaaattct aaatattact      3240
     cgcggcattt tatgcggatc gagtaagaag atcgcggctc tttgagcgga ac              3292
//
ID   P-1_SIn     repbase;    DNA;    INV; 4648 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version -1)
XX
DE   P-type DNA transposon: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4648
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 347-347 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. Termini uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           3134..4645
FT                 /product="P-1_SIn_1p"
FT                 /translation="HFTNISFHNFVSGNTTLETWTANSLRRAGLCEDHFDP
FT                 SSFKTGPTSKKNFKTLKRDAVPIKFKGYSQQESETRNTGTNQNLTLLEIPV
FT                 EIGVGELNNGTQIVSEKINNNINVEEIDVPSNRYIKTYQRAKKMHFDTSDK
FT                 VENLTLKEIPTKIGIGEINNDTQIVSEKINNNVNVEEIDVPSNRYIKTYQR
FT                 AKEIHFDTSDEEENLMEWINGEPSEIKDACNAAPIIKKTNICNASEKSQSE
FT                 VDILKQEIARLHKIIKXLKYRLRKRKVPRKPTIKRSKKRILQNLIEKENLH
FT                 PVAQAMINLQLHTPNAPYTQEEKSLAQQFFYYSASALRRLRQAGCTFPSER
FT                 TIRRWHEEYNIMPGFCDFVFLKLQEKLADLPAEERVCALKWDEMAIKSYQE
FT                 YSHHLDQVEGLVDLGPLGRRNENAKCVFVFCLDSINARNPWRQPLAYFLPG
FT                 KCMKAEEIIYLLKECLDRLSNTDADVRILTCDQGSSNQSAYNQLGVSTDNP
FT                 YLIHKGKK"
XX
SQ   Sequence 4648 BP; 1741 A; 620 C; 689 G; 1589 T; 9 other;
     atattttttt ccatttaaaa agaacgtata cattttcctt taggtatcca ttgctttaaa        60
     aattcttttt ctgtgaattg ctgtctattt aagataaaac tatgtaaaaa tgtttacatc       120
     tggaaacgta agaatatcac gaataattnc actttgaaca aattattcat aaggtttaca       180
     ttttcacata tgtaaaaata tttaatttta tttatatggt atacacagta atttttcgga       240
     aatgtttttt caaggcaaat gataacaaca aatatatgaa cccgtgngat ttttacaatt       300
     attttatgca aagttgcaca ttttgattta aaaaaaaaaa gaaaagaaga ttcattgact       360
     tcgtcgtcca agtgatgacg tattttgtca gtctttccgt acgacagaaa aatcatcagc       420
     tgtgatcacc gcgcggtctc tccttgtcag tacccgcant gtacaatatg taatgtaatt       480
     aaaatttata cagaccaagt ttaaaatgtt cttattgtta taatatttct taaacttaca       540
     tatatgaaaa atttggagaa aagatgcaga atttttcaat agttctgaaa tatttcaaag       600
     tatgtaaaaa aatctggata attgtattta ttataaatct ttgggaagaa gactgatttc       660
     gtacatttgt attaataaca ttatgtatga ttattgaata tttgtttctt tttcagcatc       720
     gctgtaaata taatttttta taanattanc atacaaaaat tcggtgaatt ataataaact       780
     tataagcata atacatatat agaaaattta tttgtatata tgatttctta aaactcccta       840
     attataaaaa actgcctatt taagctgtaa tttttgaatt ttaaatataa attatgatac       900
     aatgaatctt attggttcaa ttcgtctttt tcgtaaacgt ttaaaaataa gcgttagaaa       960
     agaagaaaaa caaaacagcg cgacgacttt acgtgacgac gaagcgcgct attgttcggc      1020
     gcagtccgca tttgatagtg agacagagta cttcgatagc ctgttctttt agttgtgtac      1080
     caaatcgcat ttttggttgc aattataagt ttcttttttc tttttctttt atttatttag      1140
     taacactgtt tgatttacga aaaaaatcga gttcgtttac gcttattctt tttagtttac      1200
     gctctgtctc taatttatat tattttcttt tattttgtgc aaagaatttt gttgacaaaa      1260
     cagtgtaaca atgagtgaaa actgtgtaaa acgtatatac gacaagtgta tgtataaaaa      1320
     ttgtcgtaac ggaagatttt caacgggatc acatttatat agatttcctg ttattactga      1380
     cgctagatgt caattatgga tacgtaatag cggtgagttc cttatcatat ttattatatt      1440
     aattgattga catttgttta aagtaatatt tcaatcgaga actcgaaaat gtagcatatt      1500
     tttagaaatc gtactatcgg atattgttta cacgtatctg aagtaattta gtctatctca      1560
     tagtcaatat ctctcaaaaa ttaaaagaca agaaatatta acaagggacg acgcagtgac      1620
     actttaggat tttgaaccta atttttttaa ttattcagga gataaaaaaa agtttacgtc      1680
     ccccggcgtt cgaacgccgg gagacgtaaa tctttttttc tttncagaaa aattaaaaat      1740
     attaaggtca aaattcgtag ggtgagtcac cgcgtcttcc tcttgtaagt agaatatttt      1800
     gtgttgaaaa tgtaaatcct ataattaatg atgatggcta tgaagattaa acaattatta      1860
     tttaattcat attaattatt ttacattagc ctactatttt tatcataatg tatgaaaagt      1920
     taataaagat aatataatat gtaaaattaa ttatatattt attattttct caaaagcaag      1980
     acaaatacaa tttcaagaaa ataaactagt taaatcagtt ttcattgttt tttttnaatc      2040
     tgtatataaa tctatttttt tatatacata taaaactgaa attatgtaat ataatacaaa      2100
     atttattatt acgaacaata aataaaataa aatatgttag aaaatacgtg gattaaataa      2160
     tcagattaat tttgtgcata aaaacttacg taatatattt tttttaatat tttaacattg      2220
     acgtttattt ttttaaaaat ctgaaaaatt gtaggtaaat aatgttggaa agatgtcgca      2280
     acaaaaaaaa caaattttgt catttaataa ttgcacttga aatttgacaa ttttaaactt      2340
     ctcgaatttt ttacaattag aaattgcatc ttaaaaatgt ccaaaaatat ttaacttgat      2400
     aactgaaatg atttctttta taatttgttg taaatcagaa gattggaaaa aatataattg      2460
     aataattatg tttttatttg ttactatcgc aagagcaaag atagcggatt aaaacttggt      2520
     gaaaaaattt tttttttaag aattaaagaa tgacgtatga taaatctatt ttcgggtggg      2580
     gaattttcat gtataaattc ggctataccg tttattacat tttagaggtc tagaaatgcc      2640
     agtttttttt atactataac gggtatagtc ggattcgtat gtaaaatttg cccccacgcc      2700
     aaaatacact tatcatacgt taatcattag ctccttactt ttattattgc gataatagca      2760
     aataaaaacg taattattca gttatatttt ttctcaaatg taattctcaa aaaattataa      2820
     aaaaaattag taacttttca gtcattaaaa tacacattta gaaattttaa aacattttta      2880
     agatacacat ttaaatttaa aaaatttaag aaattaaaaa tcgtttattt ttaacttgtt      2940
     taattgaaat tattaagaga ctaacttcat acttttctgt tgcatctttc caacatcatt      3000
     tactcaaatt ttttaaaatg ttttaaaaat aacatatatt cattttatgc ggtacacata      3060
     tttatattta tttataactc tttttgctta gttttaaatt ctctacaatt tttacggcac      3120
     accgattgtg taacatttta ctaatatatc gtttcataat tttgtttcag gaaatactac      3180
     attggaaaca tggactgcca actcattgcg tcgtgccggt ctatgtgaag atcattttga      3240
     tccaagttcc ttcaagacag gaccaacaag caagaaaaat tttaaaacat tgaaacgaga      3300
     tgctgttcca ataaagttca agggatactc acaacaagaa tcggaaacaa gaaatacagg      3360
     tacaaatcaa aatttaacat tattagaaat accggtcgaa ataggtgtag gagaattaaa      3420
     caatggcact caaatagtgt cagaaaaaat taataataac attaatgtag aagaaataga      3480
     tgtaccgagt aaccgatata ttaaaacgta ccaacgtgca aaaaaaatgc attttgatac      3540
     ttcggataaa gtagaaaatt taacattaaa agaaataccg acaaaaatag gtataggaga      3600
     aataaacaat gacacacaaa tagtgtcaga aaaaattaac aataacgtta acgtagaaga      3660
     aatagatgtt ccgagtaatc gatatattaa aacgtaccaa cgtgcaaaag agattcattt      3720
     tgatacttcg gatgaagaag aaaatttaat ggaatggatt aatggggaac catcagagat      3780
     aaaagacgcg tgtaacgcgg cacctataat taaaaaaaca aacatatgta acgcaagcga      3840
     gaaatcgcaa tcagaagtgg atattttaaa gcaagaaatt gctcgtttgc ataaaataat      3900
     aaaanattta aaatatcgtt tgcgtaaacg aaaagttccc agaaaaccaa caattaaaag      3960
     gagcaagaaa agaattctac aaaatctgat agagaaagaa aatttacatc ctgttgcnca      4020
     ggcaatgata aatttgcaat tgcatacacc aaatgcgccg tatacgcaag aagagaaaag      4080
     ccttgcgcaa cagttttttt attactcagc ttctgcgttg cgccgcttac gacaggcagg      4140
     ttgcacgttc ccttctgaac gaaccattag aagatggcac gaagaatata atatcatgcc      4200
     aggattttgc gattttgttt ttttaaaact acaagagaaa ctcgcagact tgcctgcgga      4260
     agagagagta tgtgccctaa aatgggacga aatggcaata aaatcttatc aagaatactc      4320
     acatcattta gatcaagtag aaggacttgt agatcttggg cctttgggaa gaagaaacga      4380
     aaatgctaaa tgtgtttttg tcttttgctt agacagtatt aacgcgcgta acccgtggcg      4440
     tcaaccattg gcatattttc ttcctggaaa atgcatgaaa gcggaagaaa taatatattt      4500
     attaaaagaa tgtttggaca gactgagcaa tacagatgct gatgtgcgaa ttttgacatg      4560
     tgatcaaggc tcatcaaatc aaagtgctta taatcaacta ggtgtaagca cagataatcc      4620
     atacttaatt cataaaggaa aaaaatat                                         4648
//
ID   P-1_TCas    repbase;    DNA;    INV; 3447 BP.
XX
AC   .
XX
DT   21-MAR-2012 (Rel. 24.09, Created)
DT   21-MAR-2012 (Rel. 24.09, Last updated, Version 1)
XX
DE   P-type DNA transposon from the red flour beetle genome.
XX
KW   P; DNA transposon; Transposable Element; P-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3447
RA   Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1704-1704 (2019).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(561..731,1170..1538,1624..3327)
FT                 /product="P-1_TCas_1p"
FT                 /translation="MPCCCAVNCHNKSGVQFFRLPXSNKKEELRKQWLENI
FT                 GRGEXSEYALLCEVCDKXQSLTCGSTGYEELRKQNYPIPCIRTLQRKIKSF
FT                 KCLPELHTEIFELLKTKSDVLLPEERHAVLLMDEMAIKPGFQYDNNSGEII
FT                 GIYKSSKVYKYLVKLFFSISHLLDDKKKRYREHFVYCAENVHLKAVLVIIV
FT                 LGKPTLSNSKENHSEQYASHALAFMIAGITRWKQTIGYHFTGNSYSATEVN
FT                 SFIHEIIRKCHGINIDICAVISDMGPQNQAVWKINQIKAGRFSKTQNFQNF
FT                 CMNDNESKKVYFMPDVTHLLKNIRTTLTDKNEILVSEEIVKEYKLTNNKIT
FT                 IESVKAVVEEEKKVEIKIAPYLKEKYLNPNHFDKMKVQGAMAILNHDTSAA
FT                 IKYYISRGKISQEHSTTSWFIEIIHKWFSIMSSRYIKDGLSKRNSDEYLQT
FT                 LDFLNEVIHVTNHLYVGTRGYWKPIQTGITLATQSVIDLQEKFLCYQNFNY
FT                 LLLSRFTQDALENLFSTIRSRNPVPNAKEFKTALRLVSVSQYLAHTKYGNY
FT                 NASDEIPLVDILNDQTHNDNDNDNDFETITSDSQFSSVVTQNLNCEEQHAL
FT                 YYLLGSIIKKIKVNYIYCERCFGFITVTNSAEIQNLNTLVNLKSYKEGLLI
FT                 YPSREIYFVILDAEIFFRQNVRQLIAGSIKLENLMPQFLNLKNYNVPNCRF
FT                 ILKRVISLFFKSRIYICLKNEYTIEKPATSLKCSSKSVGMRVAVLNFS"
XX
SQ   Sequence 3447 BP; 1284 A; 503 C; 546 G; 1099 T; 15 other;
     tcacgtaaat aacaaataaa tctaaaggtc tgtataatac agttaaacat tcccatgggg        60
     agccactagt ttgcttagaa tgtgtatttt gaattagaag acggttttca ttangaaagg       120
     tttaatacaa caactctcat atgtancaaa gccagtagat acactgtatc gactggcttt       180
     gatatcaaca caactgcttg accatttaag attcttaaca ttcttacacc tgttattaat       240
     tgatttacgt tctgtccaaa aaatatctcg gcgtccaaaa ttacacaaaa gattggtttt       300
     gaagaactaa ttcttcatgg gatttttgac cagtaattta aaattttcga ctgcagtact       360
     attagcagta ggtgttacgg aactaaaata cgttcaacaa tgaataaaaa atnnaattaa       420
     taaactaaac atgtaagtac ctgtctaata aaaaagcaag atgatttctt taaaaaactt       480
     taatttatat cgagtgatag ttttgtgtca caataatcat tttgacaaat tattttaaga       540
     ataattctat tctgaaaata atgccttgtt gttgtgccgt taattgccac aacaaaagtg       600
     gcgtacaatt ttttcgtctg cctncgtcta ataaaaaaga agaactgcgc aagcaatggt       660
     tagaaaacat tggaagaggc gaantatccg aatatgcctt actttgcgaa gtatgtgata       720
     agnttcagtc atgaatatgg ttcagagnag ttttgcaata ttgctttctt cgttttagaa       780
     acattttacg gaagatcaat tggaatggcg tatagataaa aaagtattgc gttggaatgc       840
     cattccgaca gttttatatg ctcctttttt cgattcagaa aagacaaaat ttttcctctt       900
     caacatcgtt taacntataa tnttttttac acagccaccg aagaanataa tttgaataaa       960
     tcaaaagaan aataggaaaa cttgataaaa aaattngaaa accagttaga acttgntaat      1020
     aaaaaattaa ggagtngatt gatcataatg tattattaaa agaaaaactc aaacaaacat      1080
     ttgaacctga acaagtcgaa atacttctaa taaactgtaa cgaaataaac tggtcgacaa      1140
     aaaccataca aaaatcttta aaattatagc tgacttgtgg atccactggc tacgaagaat      1200
     taaggaaaca gaattatcct attccatgta ttaggactct acaaagaaaa atcaaaagtt      1260
     ttaagtgttt accggaactt cacaccgaaa tttttgaatt gttaaaaact aaatcagatg      1320
     tattattacc tgaagaaaga catgctgttt tgttgatgga tgaaatggcc attaaacctg      1380
     gatttcaata cgacaataat agtggtgaaa ttataggtat ttataaatct tcaaaagtat      1440
     ataagtatct agttaaactt tttttttcaa tatctcattt attagacgac aaaaaaaaac      1500
     gatataggga gcattttgtt tattgtgcag aaaatgtatg attttgggtg aacttctcga      1560
     ataattattc gagaaaacat aaacatatgt atttttgtac aaataaacca tatatttttt      1620
     taacacttaa aagcagtcct tgttataatt gttttaggaa aacctacatt gagcaattct      1680
     aaagaaaatc acagtgaaca atatgcgagt catgctcttg cgttcatgat tgctggtata      1740
     acaaggtgga agcagactat tggttatcat tttacaggaa attcgtacag tgcaactgaa      1800
     gtaaatagtt ttatccatga gataattaga aaatgtcatg gaataaacat cgatatttgt      1860
     gcagtaattt cggatatggg tcctcaaaac caagctgttt ggaaaattaa tcaaattaaa      1920
     gcgggaagat tttctaaaac tcaaaatttt caaaattttt gcatgaacga taacgaatct      1980
     aaaaaagtct attttatgcc agatgttact catctgttaa aaaatattag aacaacgctc      2040
     acggataaaa acgaaattct tgtcagtgaa gagattgtca aggaatataa attaacgaat      2100
     aacaaaatta caatcgaaag tgtcaaagcc gtagtggaag aagaaaaaaa agttgaaata      2160
     aaaattgcac cttacctgaa agaaaagtat ttaaacccaa atcattttga caaaatgaag      2220
     gtacagggcg caatggctat attaaaccac gatacttcgg ccgccattaa atactatata      2280
     tcaagaggta aaattagtca agaacattcc actacatctt ggtttataga gataatacat      2340
     aagtggttta gcataatgag ttcaaggtat atcaaagatg gattaagtaa acggaacagt      2400
     gacgaatatc tccaaacatt ggacttcttg aacgaagtta tccatgtcac taaccacctc      2460
     tacgtaggaa caagagggta ttggaaaccc atacaaacgg gaattacgtt ggctacgcaa      2520
     agtgttatag acttgcaaga aaaatttttg tgttaccaaa attttaatta tttattatta      2580
     agtagattta cacaagacgc cctcgaaaat ttattttcaa ccattaggtc ccgcaacccg      2640
     gttcctaatg cgaaggagtt taaaaccgca cttagattgg tttcggtttc tcaatatttg      2700
     gctcatacaa aatatggaaa ttataatgca tctgacgaaa ttcctttagt cgacatttta      2760
     aatgatcaaa cacataatga caatgataat gataatgatt ttgaaaccat tacttctgac      2820
     agccagttta gcagtgttgt tacccaaaat ttaaattgtg aagagcaaca tgcattatat      2880
     tatttattag gttcaattat taaaaaaatt aaagtaaatt acatttattg tgaaagatgt      2940
     tttggtttca taacagttac taacagtgcc gaaatacaaa atttaaacac gttggtcaac      3000
     ttgaaatctt ataaggaagg attactaatt tatccttcaa gagaaattta ttttgtaatt      3060
     ttggacgccg aaatattttt taggcaaaat gttaggcagt taatagcagg ttccataaaa      3120
     ttagaaaatt tgatgccaca attccttaat ttgaaaaatt acaacgttcc aaattgtcgt      3180
     tttattttaa aacgtgttat tagtttattt tttaaatcca gaatttacat ttgcctaaaa      3240
     aatgagtaca ctattgagaa acccgcaact tctctcaaat gttcaagcaa aagtgtcggt      3300
     atgagagttg ctgtattaaa cttttcttaa tgaaaaccgt cttttatttc aaaatataca      3360
     ttttggacaa tctaaatggt tcttctgtag aatgcacaac tgtattgcat actgcttttg      3420
     atatcgattt aattattatt tacgtga                                          3447
//
ID   P-2N1_DTa   repbase;    DNA;    INV; 174 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; autonomous; P-2N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-174
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6226-6226 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs.
XX
SQ   Sequence 174 BP; 44 A; 41 C; 39 G; 50 T; 0 other;
     catggtggaa ctatacaagg tgatctcgtc gcgagagctg ccctcttttg aggacgttat        60
     ttgtgccagt ctctatctag ctttctcatt ctatcgctta agagagacag agaggtaaac       120
     atatttaacg tcctcagcag agctgacgag accaccttgt atagttccac catg             174
//
ID   P-2N1_LMi   repbase;    DNA;    INV; 833 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-2N1_LMi;
KW   non-autonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-833
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2917-2917 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 833 BP; 249 A; 151 C; 159 G; 274 T; 0 other;
     catggaggta agaataaacg gaggcgctct gacgccacag ctgtgaagcc aagggtagcc        60
     atcttgatcc gaccaaaaca ctgctgtatt taccttgttt gcgtatgctt gtcgctcgtt       120
     tttggaagga ttttgcactg ttatggtgac ttgtgtgatg tttatgtgta cgaatcgttc       180
     tgattgtgac gcgaaatcga aggaaatacc atttcatgtg taaattgcct cgctaacgtg       240
     tgattttacc acttttattg tgaacgaacc tatacaacat ctttacttgt aatgtagcgt       300
     atttttctct tatgattttc gatttcctaa agatgaaagt tatttccccc acttaacata       360
     ctatttacga atgaataagg aataaaatat aaatttgatt tttattaagt caatgatttc       420
     gaaagcaaaa cctagtttca atattaatga aacttactac acaaagaaaa gatatcgtca       480
     ctgtgctcgt aaatctggcg ttggttcact caatcgaatt attttatctg acgatcgtca       540
     gattagctaa agaaagaacc cacgtttgtg attcgtaata ttgtagtaac aactattttt       600
     aaacagaata aacgcgaaat tttttcgttt ttcgagattt tattttaaac aaaaacttga       660
     aacaaccagt ttgaggacgt tacatgcgta tatgatgcaa ttagcgactg taaatacaga       720
     cacagctata acacactgtc agtgttttgg tcggagtgtc atggcggcca tggcttcaaa       780
     gcgtagtacg gctgggatac gtagcgccat ctccctttat tcttacctcc atg              833
//
ID   P-2_AP      repbase;    DNA;    INV; 4014 BP.
XX
AC   Contig16746;
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 4)
XX
DE   P-like DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; P-2_AP.
XX
NM   P-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4014
RA   Jurka J.;
RT   "P-like DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1798-1798 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1370..1516,1520..1843,1847..2959)
FT                 /product="P-2_AP_1p"
FT                 /translation="MSIRKHIIWNDKNNKFLGYCDFGNNLDIQSNETSATE
FT                 VLVFIAISINGKKLPIGHFFQNKISAISQTELVKTALTLTHIAGLKVWGVV
FT                 CDGAYTNVSTMKHLGCVVDGGYEELRCWFSHPVNNQKVYYIPDACHNLKLA
FT                 RNILGNCKFIKSNKGNVKAHILYLHSVQNDITFKFSNKISAAHIHYYNNKM
FT                 KVKYAAQTLSPSTADALEYLNKMNVTGFADVEATFEYCRVIDRVFDFLNSK
FT                 SSFSKGLKFPIFRNNISFLKTIIIPLIKYIYSLKFNNTPLHKSKKKKTFII
FT                 GFAIAVISVFSIAETIFLEHYSSLNMNYILTYKFSQDHIEIFFAQIRQRYR
FT                 SNNNPNVVQFKTALKQILFKNYIKCKSNGNCNISDDDISGGIFEFKWYRRQ
FT                 KNIDEITCSEELDEDICNRLVLLNTINTSLAEAKNNIFYYILGYIIRGIVN
FT                 NLSCNSCITCLFQKISDHNYSHSSVSQFLNLKNKGGLISASEDAFKIIVET
FT                 EKLFLYYTHNLKRLHFPNLNIIILRQIINKFS"
XX
SQ   Sequence 4014 BP; 1491 A; 545 C; 511 G; 1467 T; 0 other;
     caactagata gccgactcga tcttaatatt gaagcaaatc cgccatatgc aaagctggaa        60
     acgtttacat tatacacctt atcataatct tatcataatt cataataacc acaaacggca       120
     caaacatttc caaatttcat attatgcttt tactcgttgt ctcgttttcg tgaaaccgtt       180
     attttcagta cgcattaatt ttttatgtta tgactttatg agttataaat attttaataa       240
     actttaatac ctacttttta tatttattca aatatggtag catcgtgttc tgcacatggc       300
     tgtgtaaaca gacaaataaa aggcattaaa aatcattttt ttacgtaagt acttcttata       360
     ttaaaacaaa ttacgttgtt ccaactatta atcacagaca actgctcttt tacagatttc       420
     cattacgaaa tcctgagcgc aatgctaagt ggataaaagc tgttggacga aaaggcttta       480
     ttccaacaaa aaatgcacga ttttgtagta atcatttttt gaaaagtgat tttaaaactc       540
     cagttggtgg tacctataaa ttgttattgt gtgatgatgc tgtaccatca atattcaaca       600
     tgactgttat tcaaacacca acaacaatat atattactca gaaatttgtg aaccaacttc       660
     aagtcaatta actactacag agttatctac atcagttcaa catgaaccat tatgtcttac       720
     tccaaaaaga catttgtgtt ttaaaagtgc tgaagaagaa ttttcattaa tctccactcc       780
     ttctaaatgt aaaattactg tatcacctta tcgaaaaaca actccttcaa aattagtaca       840
     taaaaataaa ataataaagc aagctaacac aattaaatta taaaagcaac aaatcagacg       900
     taaagatatt aaaattaata ctttagcagg tcttttaaag ttactaaaag acaaaaaagt       960
     attaaacatg gaatctgaag aacttatgtt agacaaattt gacggactct ctcaagaatt      1020
     attttccaac attcataaaa atcaaaatat cgacccaaat ggtagacgtt acagtaagac      1080
     tataaaagaa tttttgctta cattaaatta ctattctcct aaagcttatg agtttagtta      1140
     gttcttatta gttcttttcc taatgcattt actacagtat tttctatata atactgataa      1200
     ttaagatatt tattatattt acaggtcaat attaatactt cctcatgcaa aatctataag      1260
     aaactggaca tctacattaa atggcgaacc tggatttttg caagaagtac tggattctct      1320
     acaaacattg aatgaaaatg ataagcattg tactattgca tttgatacca tgtctatcag      1380
     aaaacatatc atttggaacg ataaaaataa caagtttcta ggatattgtg acttcggaaa      1440
     caatttagat attcaaagta atgaaacttc agctacagaa gtgttagtgt ttatagctat      1500
     tagtattaat ggcaaatgaa aattacctat tggtcatttt tttcaaaata aaatatctgc      1560
     tattagtcag actgaattag ttaaaacagc cctaactcta acacatattg ccggtcttaa      1620
     agtttggggt gtagtttgtg atggagcata taccaatgta tcaacaatga aacatttagg      1680
     atgtgtggtg gatggtggtt acgaagaatt aagatgctgg ttttctcacc cagtaaataa      1740
     tcaaaaagta tactatatac cagatgcctg tcataattta aaattagcga ggaatatatt      1800
     aggaaattgt aaattcatca aatcgaataa aggaaatgtg aaataggcac atattttata      1860
     tttacatagt gtacaaaatg acataacttt taaatttagt aataaaatta gtgcagctca      1920
     tattcattat tataataata agatgaaggt aaaatacgct gctcaaacgt taagtccttc      1980
     tacagctgat gctttagaat atttaaataa aatgaatgta actggttttg ctgatgttga      2040
     agcaactttt gagtactgtc gagttattga cagagttttt gattttctta attcgaaaag      2100
     ttcattttca aaaggtttaa aatttccaat ttttagaaat aatattagct ttcttaaaac      2160
     tattataatc cccttaatta aatatattta ctctttaaaa tttaataata ctcctttaca      2220
     taaatcaaaa aaaaaaaaaa cttttataat tggatttgct attgctgtta tatcagtttt      2280
     cagtatagca gaaacaatat ttttagaaca ttattcatca ttaaatatga attatatttt      2340
     aacatataaa ttttctcagg accatattga gatattcttt gcccaaatta gacaacgcta      2400
     tagatcaaat aacaacccta atgtggtaca atttaagaca gctttaaaac agatattatt      2460
     taaaaattat atcaagtgta aatctaatgg aaactgtaac atatctgatg atgatatttc      2520
     aggagggatt tttgagttta aatggtacag aaggcaaaaa aatattgatg agataacgtg      2580
     tagtgaagaa ttggatgagg acatttgtaa cagattagta ctactaaata ctataaatac      2640
     gtcattagca gaagccaaaa ataatatttt ttattatata ctaggatata tcatcagggg      2700
     aattgtaaat aatttgagtt gtaattcatg tattacatgt ttgtttcaaa aaatatctga      2760
     ccataattat agtcattcat ctgtttctca atttctaaat ttaaaaaaca aagggggttt      2820
     aatatcagcg tctgaagatg catttaaaat tattgtagaa actgaaaaat tatttttata      2880
     ttatactcac aatttaaaaa gattacattt tcccaactta aatattataa tactacgtca      2940
     aatcattaat aaattttctt gagattgcaa catttttcag gacataaatt gtgaaaatat      3000
     ttccatatta gatagaccac acaaaattgt acttattact ttaattacta acaaattttt      3060
     aagcatccgt ctcaaatcgt atggaaaaat gttttcttct aatatcttaa atccacatag      3120
     aaagcgtcat acactaacta aacaaatgtt attttcacat caataattaa attatttatt      3180
     attctatgcc ttatagttaa atgttgtata ctattctttt aattatgttt atattttgta      3240
     tctttttgtt aaattagaag ttaataatgt taatttatat ttttattatt attcatgttg      3300
     tacattaata cctataaata atgatgtttt cctatataat gaaataaata ttttttgtaa      3360
     agtttaatag tacaaatata tataatatgt ctattgtaca agttataata ctacaatttt      3420
     tgtattgaat taaataaaaa ctttgtattt gatatttgtt tttaagtatt cactttttgt      3480
     tacttttctc atctcaagta ttagaaaaaa atttaaaatg ttttgttaaa cagcattatc      3540
     gtttatgttt atacccaatg tcacacatga aatttttttt actgggatat ttataatagt      3600
     aattacattt gaaagtcaat gttttaaata tttaattcaa ttgatgtcag ctactgatat      3660
     gtattgaatt tttaaaaaac aactcatttt tttatacaaa tttttgtatt ttttttagac      3720
     caaggctcat taaagttgta tgtttgatta atgattaggg cacgggttca gttgtaattt      3780
     ccagaaatca atcaacatca catagttttt ggttaaaaaa taataattat attttcaaat      3840
     ttactacatg ccaaaacgca aattcattat tttaatattt caaaatacaa attaagttaa      3900
     cacgttatca ataaacgtta ttattacaat ttatataaac attgccagct ttgcatatgg      3960
     tggcgttatt catgccctcc tgcagtgttg tataggaagt cggctatcta gttg            4014
//
ID   P-2_DRh     repbase;    DNA;    INV; 1404 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1404
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1416-1416 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..255,249..1403)
FT                 /product="P-2_DRh_1p"
FT                 /note="transposase."
FT                 /translation="YKNEKENILLCEQHQTEFKIKLNQNSTQDNSTSLNKL
FT                 NILEDGLSSPNYLESKGLSSPVFINVSEKGLSSPPILESKGLSSPNYYLLL
FT                 KKGLSSPNNLESQGLSSPNYLLKKGLSSPVYTKCKPQGXSSPSFSLIKANL
FT                 IIKSLKRNNKVLKDENKKLLKGQRCLRSLNISLKKEISKENRSNEILIQKN
FT                 IELEQCNSVLEMQNDALSKRNLAVCNKNDALESRNYDLILETMLFQEKSSM
FT                 LQVKMNSLLSXILELEKKNKKFAEEVESAGRLKLLASFEDFEILKSKFLEC
FT                 SNLCGSKIQSKENAAGMNENVITFQSIISQKKGIHCTDSEKRLFLQIYMHS
FT                 PKAYNNLRLNLGFNMPSEASLRRWLPLKEFKPGFTGDHIVILKEFVNKMNE
FT                 SDRNCTILFDEMSIKSGLEYVPKSDQVVGFADLGDGYSENDQYSSPAEGML
FT                 AVMIRGQVKPWKYVLGVFFVNNFIR"
XX
SQ   Sequence 1404 BP; 523 A; 215 C; 253 G; 411 T; 2 other;
     tataaaaatg aaaaagaaaa tattttgttg tgtgagcagc accaaacaga atttaaaatt        60
     aagttaaatc agaattcaac acaagacaat tcgacaagcc ttaataaatt aaatatttta       120
     gaagatggat tgagctctcc taattattta gaatccaaag gattgagctc tcctgtattt       180
     ataaatgtat cagaaaaagg attgagctct cctcctattt tggaatccaa aggattgagc       240
     tctcctaact attattaaaa aaaggattga gctctccgaa taatttggaa tcccaaggat       300
     tgagctctcc taactattta ttaaaaaaag gattgagctc tcctgtttac actaaatgta       360
     aaccacaagg atkgagctct cctagctttt ctttgataaa agctaattta attataaagt       420
     ctttaaaacg aaataataaa gttttaaaag acgaaaacaa aaagttgtta aagggacaac       480
     gttgtttaag atcccttaat atttcgttaa aaaaagaaat ttctaaagaa aatcgctcaa       540
     acgaaatatt aattcaaaaa aatattgaat tggagcaatg caattcggtt ttagaaatgc       600
     aaaatgatgc tctctctaaa agaaatttgg ccgtttgtaa caaaaacgac gcattagaaa       660
     gccgcaatta tgatttaatt ttggaaacaa tgctgttcca agagaaatca tcaatgctgc       720
     aggtgaaaat gaattctttg ctttcamaaa tattggagct agaaaaaaaa aataaaaaat       780
     ttgctgagga agtcgaaagc gctggtcgcc ttaaactttt agcttcattt gaagattttg       840
     aaatcttaaa aagcaaattt ttagaatgct ccaatttgtg cggaagcaaa attcaaagca       900
     aagaaaatgc cgcaggaatg aatgaaaatg tcataacatt ccagagcatc atttcacaga       960
     aaaagggaat tcattgcacc gattcagaaa aacggctatt tttacaaatt tatatgcaca      1020
     gcccgaaggc atacaataat ttaagattaa atttgggctt caatatgcca tcagaggcat      1080
     ctttgagaag atggttgccc ttaaaggaat ttaagcctgg ctttaccgga gatcatattg      1140
     ttatactaaa agaatttgta aacaaaatga atgagtccga taggaattgc acaattctct      1200
     tcgatgaaat gtcgatcaag tcaggactgg agtatgtccc aaagtctgac caagtggttg      1260
     gatttgcaga cttgggagac ggttattctg aaaatgacca atattcatct ccagcagagg      1320
     gtatgctggc cgtgatgata cgcggccagg ttaaaccttg gaaatatgtt ttgggcgtct      1380
     tttttgtaaa taatttcatt cgag                                             1404
//
ID   P-2_DTa     repbase;    DNA;    INV; 2939 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; P-2_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2939
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-AUG-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. 8-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(639..980,984..1184,1193..1900,2062..2322,
FT                 2309..2659)
FT                 /product="P-2_DTa_1p"
FT                 /translation="MKTLNESLNAIFTTNQISNFENGGRRVEWDRDDISNA
FT                 CGHIAICTKKGFHFRHPSSTLQRWLHAVDLQHGILGFVISLMENAVDMDEE
FT                 DKICILYFDEMKVTQTYKYVYSLEAVKPRDYVQVAMVQGLRKSVSTLYHLI
FT                 ERLYMVGYHVVGIVSDMGPGNHKLWRSLRVSPGRKLKKYSISFAYFFLTEK
FT                 SWLEHPADSAMKVFVFADVPHLVKLILNHFLDSGLVIDGTVLTQQSVRQVM
FT                 HHASSSDLSIMWKVTDDHLNARSAGRQKVKLATQLFSHTTASAIRRCFSLG
FT                 LDVYNPTETADFVQLVNDWFDVFNVKLSTSNLIPTKQTFGNNLEVQQQVLI
FT                 KMTQVMSQEIVPKSKKRLAFQKGILLSNSSLNELYKYLAERYNMKYLITSR
FT                 ISQDQLEHFFGAMRAKGGLHDHQLFVNYLRIHVCMNKTLSLFLARNTEVLD
FT                 TKANVDVEPTPWLDINISSTQPSSMSSDPNAVLAIEEQIGEKTDAESQLTD
FT                 DSIEYISDSTYLIRRLKLDLDCVDKGNSTFTYVDMVSRGGLIKPSKEFVKK
FT                 NKQLECVFNKFNGKTICENRFLMVDMIKDSIAIQLSEKKKNFFFKTRIKFR
FT                 IKSLNKKLKVQKQKQRLVGQKKC"
XX
SQ   Sequence 2939 BP; 943 A; 514 C; 603 G; 879 T; 0 other;
     catgatggaa ctatacaagg tgatctcgtc gcgagaacgc cctcttttga ggacgttatt        60
     tgtgccagtc gtttgtcaaa cattgtcgaa agaggttgtg tagcgctttt ttttcgttgt       120
     cttcttcttg attgtgtaca cagaaaacgt tacattttgc agcttcgttt tctcttagat       180
     ataaatatgt caaaaaaata ttgtgtgctt tgccggtcta aaactctgga aaacagtttt       240
     ttagcaccaa aagacgaagg cataagggag ttatggtcaa ggagcaccgg cgttcaatta       300
     tctagtacaa gtacagtttg tggcaaacat ttttatcgta ctgactttac cggaagtgca       360
     actaaacgga gacgtttact tcaaattgct gtgccacaga agcagccaga aattgagcag       420
     gtgtttacag aacacatacc gtcggcttgt gctgaatgtg ctttttactt tagctcgcaa       480
     acagagtatg ttttattttt tttttatgat tactaatata attaagttgt agacaagaag       540
     tggttgattt tggccttgcc atagaaaatt tgcgtttgca aaagagtgtt gcagaattaa       600
     aaaaggaaaa tgcaaatctt cgtgaccaac tccaaaaaat gaagacgctg aatgaatccc       660
     taaatgcaat ttttaccaca aaccaaatca gtaattttga gaacggcggt agaagagtgg       720
     aatgggatcg agatgatatt tcgaatgcat gcggtcatat cgccatttgt acaaaaaagg       780
     gtttccattt ccgtcatccg tcatccactt tgcaaaggtg gttgcacgca gtggacttac       840
     agcatggcat tttaggattt gtaatctcct tgatggaaaa tgccgtggac atggatgagg       900
     aggacaaaat atgtattttg tatttcgacg aaatgaaagt cacgcagacc tacaaatacg       960
     tttactctct ggaagcagtt tgaaagccac gggactacgt tcaagtcgca atggttcaag      1020
     ggttgcggaa gtccgtatcc acattgtacc acctcattga gagactctac atggtaggat      1080
     atcatgtcgt tggaatcgtc agtgatatgg gtcccggaaa ccataaactg tggagaagtc      1140
     ttcgagtctc gcctggtagg aagttaaaaa aatatagtat ttcttagatt aatttgcata      1200
     ctttttttta acagaaaaat catggcttga gcatccagct gactcagcta tgaaagtttt      1260
     tgtgttcgcc gacgtaccgc atcttgtcaa gctgattcta aatcatttcc ttgattcagg      1320
     gcttgttatt gatggcacag ttctaaccca gcaatccgta aggcaagtta tgcaccacgc      1380
     ttcctcgtcc gatctttcca ttatgtggaa agtaacagat gaccacctta acgcgcgctc      1440
     tgcaggacga caaaaagtca agttggccac tcagcttttt tcacatacaa cagccagtgc      1500
     aattaggcgg tgcttttcat tgggcttgga cgtatacaac ccaaccgaaa cagctgactt      1560
     tgtacaattg gtaaatgact ggtttgacgt ttttaacgtt aagctgtcaa catctaactt      1620
     aattccaaca aaacagacct ttggaaataa tctagaggtt cagcaacagg ttttgattaa      1680
     gatgacccag gttatgtccc aagaaattgt accaaagagc aaaaagagat tggcttttca      1740
     aaaaggtatt ctcttaagta acagctcttt aaatgaatta tataagtacc ttgcggagag      1800
     gtacaatatg aagtacctta tcaccagtcg gatatcgcag gatcagctgg agcacttttt      1860
     tggtgcaatg cgggccaaag gtggtctgca tgaccatcaa taacctcttg aatttaaatt      1920
     ccggctacgc aaataggtaa caactttatt gttggtagta attgattaca tgtttaatca      1980
     aaaaataaca aattttgtta tgtgttagat ttgcagggtg tatgtttgtg aagtctacgt      2040
     gattgttaag tattttctta attgtttgtc aattatttaa gaattcatgt ttgtatgaac      2100
     aaaacattat ctttattttt agcgagaaac accgaggttt tggatacgaa ggccaatgtt      2160
     gatgtggagc caacgccatg gttagatatt aatataagtt caacccagcc gtccagcatg      2220
     tcaagtgatc ccaacgcagt attagccatt gaagagcaga taggggaaaa gaccgatgca      2280
     gaaagccaac taacagatga ctccatagag tacatatctg attaggcgac tcaagctgga      2340
     cttggattgc gtcgataaag ggaattcaac gttcacatat gttgacatgg tatccagggg      2400
     cgggctgata aagccatcaa aagaatttgt taaaaaaaac aaacagcttg aatgcgtttt      2460
     taacaaattt aatggtaaaa caatttgtga aaatcgattt ttgatggtcg atatgatcaa      2520
     agacagtatt gccattcaat tgagcgaaaa aaaaaagaat ttttttttta aaactcgcat      2580
     aaaatttaga attaagagct tgaacaaaaa gttaaaagtc cagaaacaaa aacaaaggtt      2640
     agttggccaa aaaaaatgtt aaaaatatta ctataaatat atatttaagt aattaatttg      2700
     tatacaacta tctgaaatat aaatttaaat acaacatttt gctttaaata tttcgtttta      2760
     tttattcctg aaacatattc tgtcctgaaa gcgaatacaa aagcaaaaac gaagcgtgcg      2820
     aatgaaatac tagttctatc tctttctagc gcttgtctct ctgagagcag agagagagag      2880
     agctgaaaaa taacgtcctc ggcagagctg acgagatcac cttgtatagt tccatcatg       2939
//
ID   P-2_LMi     repbase;    DNA;    INV; 7937 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 19.11, Created)
DT   02-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   P; DNA transposon; Transposable Element; P-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7937
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3019-3019 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1366..3138
FT                 /product="P-2_LMi_1p"
FT                 /translation="MQRERPACSDLVSTSRLETEASSLVPDTTAEPSNSSE
FT                 PSSETNKLKRHVSQLMVKNEQYKKKIKVLQQSKRRLKKKVLSLSAVLKELK
FT                 NKNLLDESGMYVLENIPGIQTELLQRQTAKAAGQAVPRSYRPELRSFALTL
FT                 HFYSPRAYSYVRRCFNTCLPHPRTLSKWYQCVGGAPGFTSEAFSVIKAKAC
FT                 NQDLKYPLLCSLLVDEVAIRQHVEFDGVSYYGYVDMGSSVDTDNLPVAKEA
FT                 FVLMLVAINASWKLPVGYFLTDGINGQQKAQLVQQCISIANSNGVQVVSLT
FT                 CDGSATNLSMARCLGCDTNCASLKTTFVVEGNPHEVAFLLDPPHMLKLVRN
FT                 ALGDKKQFWDEQGELISWHYLELLHNLQVKEGLHLGNKVTASHLNFVKNKM
FT                 KVKLATQLLSNSVADAIQHCCDMEVPGFKQASGTVRFIRLFNCLFDILNSR
FT                 TLAQKDWKQALNNTNFRAVNEFLQGAQRYIKTLTVGPKPEGMRVVDSNRRT
FT                 GFVGFLVCISSVVHMYTKLLDPQMSTPLLKFLPVYKCSQDHLEMFFSAIRG
FT                 RGGWNNNPTARQFIGAYKRLMVHSQIRESEKGNCVPLEDIPILT"
XX
SQ   Sequence 7937 BP; 2414 A; 1405 C; 1526 G; 2571 T; 21 other;
     catggaggta aaaataagag gagagggcat gacgtcacga ctgtgaagcc gacagaaaac        60
     attcggccgc catattgttc cgaccagaag agtgcacgtc taggcttgta tgaatagaag       120
     tgtctcgcgt tttcggatct tttcttcgta aatatggtgt cgtgtgtagt gtttggttgt       180
     acaaatcgtt cagacagcaa cgcaaaagcc aaaggaatca catttcatgt gtaagtttct       240
     tttctaacgt gtttgttgtc acttttattg cgaatttgtg ccgtcgatcg tgtaacacat       300
     tttgtctcgt tcaattttca gatttccgaa agatgaaaag ctaaaagctt tgtggataaa       360
     tgccgtgaga aggaagcact ggaagacaac taaatggagt actatatgtt ctcatcattt       420
     tcgagaagaa gacatcgacc gaacgtcgct ttgcagagta cgaattaggg aaaatgctgt       480
     accgtcagtt tttcctgctc acccgcttca tttgcagaag gtacttaatt ctgaaattta       540
     aatttagctt atgttcctct gtaagaaagc agcaagtcgt aaattgttaa caatattaat       600
     tttctagaaa gacccatttt aaaagctaac agtggtttaa tagtaggcct attacacatg       660
     taggccaaat tatgaatata cactccaaag tagtttgagt ctcatcataa acataagtat       720
     ttttattatt ggcgcacaca caatcctttc tctgtcatgt tactgtactt aacatctama       780
     gtgtgtacat aacccccccc cccctgtaat tcaactctga aaagtaacat tactgacgaa       840
     aatgatttag agcccagttc ctatatcatg gtatkcactg ttgtgaaact cagatatttc       900
     atttaggcta ctgtaccagt actgcagaat aggatacaaa atgaaccaag aaatttacat       960
     aatttttaag acagattgtt ggtccaatga cattaactgt gggtcagaac acaacataca      1020
     tgttgacttg ctgtcactta atgaaccata agcaaaagaa tcaatattct gaaattgggg      1080
     catatatgta ccccacaagt aagctcacaa attgttaatt agtgacattg ccacacataa      1140
     gcctataagt aatcacaaat tgtcaactga gtagcaatag gtttgtgtgt tacatattct      1200
     ctgatgacta ttttaaaaac aaagtaaata tttatttgaa gttgatgttg aaattctgtg      1260
     acaaagtaaa agtagttatt aaggttttat gtgtaacata tttaagaaat atgttttcaa      1320
     ttgtactatt tcttttcctt agaaagagag aagaggaagt tgccaatgca aagagagagg      1380
     ccagcatgtt cagatttggt ttctaccagc agattggaga cagaagcttc aagtcttgtt      1440
     cctgacacca ctgcagaacc ctcaaactct tcagagccat cctcggaaac taataagctg      1500
     aagagacatg tgagccagct gatggtgaaa aatgaacaat ataagaagaa aatcaaagtt      1560
     cttcaacaat ccaagcgacg gctgaagaaa aaagtgttgt cacttagtgc tgtccttaaa      1620
     gaattgaaga acaagaatct tttggatgaa agtgggatgt atgtactaga aaacatacct      1680
     ggcattcaga cagagctatt gcaacggcaa actgcaaaag ctgctggaca ggctgtcccc      1740
     aggtcgtaca ggccagagtt acgttccttt gctctgaccc ttcattttta ctcacccagg      1800
     gcatacagtt atgtcaggcg ttgctttaat acgtgtttac cacaccccag gacattaagt      1860
     aagtggtacc agtgtgtcgg tggagcacct ggattcacgt cagaagcatt tagtgtgatt      1920
     aaagctaaag cctgcaacca ggacttaaag tatccactcc tttgtagttt gttagtggac      1980
     gaagttgcca ttaggcagca tgtagagttt gatggtgttt cctattatgg gtatgttgat      2040
     atgggttcct ctgtagacac agataacttg ccagttgcca aagaggcatt tgtgctaatg      2100
     ctggttgcca ttaatgcctc ttggaagctc cctgttgggt acttccttac tgatggtata      2160
     aatggtcaac aaaaggctca gttagttcag caatgcatca gtattgctaa ttcgaatggt      2220
     gttcaggtag tgtcactgac ttgtgatggt tcagccacaa atttatcaat ggctagatgc      2280
     ctaggatgtg acactaactg tgcaagtttg aaaactactt ttgttgttga agggaaccct      2340
     catgaagtgg catttctttt ggacccaccg catatgttga aattagtgcg taatgcttta      2400
     ggagacaaaa agcagttttg ggatgaacag ggtgagctca tctcgtggca ttacttagaa      2460
     cttttacata atttacaagt gaaggaaggc cttcacctgg gtaacaaagt cacagcaagt      2520
     caccttaatt ttgtaaagaa caaaatgaag gtgaaactag caacacagtt gcttagcaat      2580
     tctgttgcag atgctattca gcattgctgt gacatggaag tgccaggttt taagcaggca      2640
     tctggaacag tccgatttat tcgtcttttt aactgtcttt ttgatatttt aaattctaga      2700
     acactagcac aaaaagattg gaagcaggct ttaaataata caaattttag agctgtaaat      2760
     gaattcctgc aaggtgcaca gaggtacatc aagactctca ctgttggtcc aaaacctgaa      2820
     ggaatgagag ttgttgactc gaatcgaagg actggatttg ttgggtttct tgtatgtatc      2880
     tctagtgttg ttcacatgta tacaaaacta ctggatccac aaatgtctac tccactccta      2940
     aagtttctgc ctgtgtataa gtgctcacag gaccacttgg aaatgttctt tagcgcaatt      3000
     cgtggtcgag gtgggtggaa caacaaccca actgcacgcc agtttattgg tgcctataaa      3060
     agacttatgg tacatagtca gattcgtgaa tcggaaaaag gtaattgtgt acctctggag      3120
     gacattccaa tccttactta gcagctccca acatgaggaa cacattaatc aaacttctga      3180
     acgttggcag ttagtaagta aggcaggccc tgtagtgaca cttgaccacg attacgctgc      3240
     tgctggaatt tttctttcag aagtggcgat cacattgtgg tctatattgc agggtttgtg      3300
     gtgcaccact tggagaatac attgaactgt gagccctgcc tttctgtgct gcgaggagat      3360
     ggaagccatg tagcctattc tctcattata gagagagtag aggatggcta actttaccat      3420
     caaatatgtt gtggacatct gtgtgagtgc agaaaaagtg ttcaggagga acacgacagg      3480
     gaattttaaa gttccattaa gaattctgtt ttctagatgt gtgtctgagg tatactgatt      3540
     tcctgttcaa gccagtcttc aaggacttag cagaacacat gaggaatcag catcctgtgg      3600
     acaatcattt gatactgctg ataaaagcag tcagttgcca gaaggtacct tctgacacga      3660
     cagaaacatg cagcgaagtg ccttaccgat acattgcatt caaataaaat cagggcaacg      3720
     tataccaaac ttattctttt gaaggggcaa taaatttaag tagaggatga tgttcaaaat      3780
     atttcgttat aatagtttta atcacaaagt gttaaaaatt tggcattatc tccatattat      3840
     gaatgcttca caaaattata ctacatacgt ggcttacaat atattgctca aaaaatgatt      3900
     tgttgagaca gtttgggtta tcagattttt taatcaattt ttgtgtatat ttcataacag      3960
     ggttttgttt tgaagttatg ttgttgaggt tttggagcag cccaattcgt tgtcatgttt      4020
     gtcgtcagtg tcttgaatat cagcttttct cagcatagtt catttgctgt atgaattaaa      4080
     tttgttaagt gacttaaatg caatcttaga ttgttctcac cattctacgt tgtctgttat      4140
     tcttatccct attttgtgca atttgattgc tctcttagcc ttgttttgct ctgatgtgcc      4200
     ttgtgttaaa ttagtgcccc tagccattac attctcttat tagttttgaa ctactgtggg      4260
     tctcactggc caagttacct cagatggtaa cggaagctgt tgtcattcct acattcatca      4320
     cagttatgta ccatgttgag attttgagta ctgtctttat gtatactcaa taggcttaac      4380
     atttttctcc ttttgctaga aatatattat ttcccccctt ttgctagaaa tatgtgcata      4440
     actgaagact gggataccac ctttcagctt tgaatcacac caccaacatg ttggaaaacc      4500
     agtatacggg gtaattctta atgcttatgt attgtagaga ataaataatc tatcagatta      4560
     caacaacaga atgtactata gctcacatgt ctcagcccaa aaattcacac cttcagactt      4620
     acttgtgaaa aaataacctc tctgttaacc tatacctcac tatcagggtg aaactagaga      4680
     ttatttttta aacacacaat cttatgttct gtttgtaaac aaactatcaa ctttaactca      4740
     gccaccacat aattacttac ggcacctata acatgcacac acacaacatg ctgatgccac      4800
     gggtaaaaac caacgggcag tatcccagtc ttcagatgag ccgtaatagg ttctcttgct      4860
     ggaaatattt tctttattag attaaatttg aatgccaaag cattgtggtt agcgataacg      4920
     tttaaagata gctgggcctt cacgtacaaa ttattccatg ttaaaataat acatatgggt      4980
     attaatattt ttcagcaatt attattttat tagaccagcc atccccctcc cccatctgga      5040
     gtatttattg cataagtgtg caagcagttg ataaaatatt gctataaaaa catttaagat      5100
     tgcacaaggt ggtctgaata caccaattgc aataatattt tgcttttccc agagcagctt      5160
     attgcagata gttctgttgt atacttgacg ggggaaggaa ctggcatttt tgggcactgt      5220
     agttacacat ttaggaagta ctgtgacacc tcaactggct tgtcatgtat acagagtcga      5280
     acatggtttt gttgtcaatg ggtgaactat aaactttgct tggggatacc aactatggta      5340
     tctaagcagg cactacatat tttccagtta ttactgttat taccataatt atcagtatat      5400
     ttttaatagc agtagggttg ttttgtgtga tgttgaaatt tgcttggact gttccatgca      5460
     ttgtcactca gtgtttcaat tagcacttat cacattgttt tcagtacaga tatgtggttg      5520
     attccatagt cgtggatgtg acacatgaat tattaaaatt aactataaaa cacttttcat      5580
     atatcccaag ttaaatattg ctgtttcact tacatcacag gtttgactaa agtaaatact      5640
     gtgatgtttg tagaagaaat tgtgaattga atgattacat ataaagatam catattcact      5700
     tgctcttacg tcagccgtat tttagaatgt tggaaattgt ttttgkgtag tattaggtac      5760
     tttgtgttag cttttgtacc tctgctttac caatatcctt gaatagtcgg tttatgttgc      5820
     mtgtgaaagt ggggamtatt gctgtggttg gtatattatt tgtatataat agcaaagtaa      5880
     cttaaaagta caccacatac aaaacaagtt tcatagtgaa tgstatgaca aacwgagact      5940
     gaactttgtt agaatgtata tctgtaacat agctgttttt atttttttcc cctttcgtat      6000
     ctctcactga tacagagtct ggttaasaaa tttgcttaaa aatatgatta tcgtgatttc      6060
     cttcactgat tctttgtcaa caaatacaaa atgagtgcat cttccataat tatgtactgt      6120
     agaatacagg agttamatat acttcatttg ttactgttac atttaattta ttgcggatkg      6180
     aatgttgtta cagtatgttt cataattttt ctttctttca taaaaccatt ctgtaatgta      6240
     tgcaatagtt ttttaatsct ttttwwaata aatgagtcaa ctacaaactg agcatttgtt      6300
     attaataccc cagctgaaat tactggmtag tgtwtgaatg gstaaaggtg ttcattgtgt      6360
     tggtgctgta gtaactgtga aatgtttgat aaaagtacag gtaaagctga cactgaactc      6420
     tgcaaaataa tgaaagtgat tttgacaaag gtgtgagaaa cacactaggt kacagcctca      6480
     ctgattctaa catatttacc actaactcaa gatttttgtg tttatcacat agcaagtgaa      6540
     gtacttgtat attatgtagc caatatgcct gtggctactt gtcagtgatt gcctggtaaa      6600
     tacasasagc aacgcaagaa cmagatatct tgttctataa ttctagctaa aatttacatc      6660
     taatggatga tgatactttc cagtatttga atcactagat aaaaagaaac aggaaaagtg      6720
     ttactttttg tattctatct gcaccatgtg tcaagttttt ttcagaataa aggtaaacag      6780
     caaggtaaga taaatgtgtg aaaattccta cactcattct ttttgtgctt caaatatttg      6840
     cagtgcagcc acagtttgtg accaatggat aggttatgaa aatctttcac ttaatgtggg      6900
     tgctttatta aataattaaa gcacttaaga aatttctcat aattagattg aacataacat      6960
     tgcaggtaaa ataatggaaa ggcttttaat gatttcatta atcagggcag cttcactaat      7020
     tcacaggatt gtttattaaa cctttacttc ctactcctgg ttcatgtgtt tcatgtcaaa      7080
     ttattagtga agtacaatcg tgatgagtta catgctatat gcatcatgat gccaacaagc      7140
     ctagatgagt acttgtaagc gacttacagt taactattca gatagaataa aaatacttag      7200
     acaagcgata aatcaacttt cagtcgtaat gtacagtaat gcaatttctc cgaacagttt      7260
     cttattgtat gagaagtgtt tactgtctct atacacagca ctttctaaag tttctattta      7320
     aaaatgaaac gtttcacata acgaaaatta gtactctagt attatgaata ggctacattc      7380
     agttttggct gtagttttct agacttcgag tactgagcat attttcgtcg aactttagct      7440
     acaatagaca ggtatacacg gtgttgttga cattttttgg tgttggccgt ctgcaaacta      7500
     tcacttatgc acgtatgtac tgatgtgtac cactttcctt gacagtatcc tagtatatca      7560
     ggcacctgga cggttttctg aacaaagcta acgtaatgtc tataccactg cctatgtaat      7620
     attaaaatcg catcatgaga tcgctgacac tgatgactga caaagtattt tgtaaccttc      7680
     aattaaatac gaatttggac aggagatacg agaaagtgtt tttccggcat cacacactct      7740
     acagtaatac tgaatcaacc aactagagaa cgtaaattgt atacacagtg cacctagcga      7800
     gttttaatac ggacttggcc ataacgttcc atacgtgttt ttgtcagaac aacatggcgg      7860
     agtgccacgc ccacaggctt caaagagtag tactgctagg atgcttagcg ccatctcccc      7920
     ttattctaac ctccttg                                                     7937
//
ID   P-2_PBa     repbase;    DNA;    INV; 3534 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   P DNA transposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   P; DNA transposon; Transposable Element; P-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3534
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 641-641 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. TSDs are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(872..1198,1561..1878,2125..2469,2563..3381)
FT                 /product="P-2_PBa_1p"
FT                 /translation="MRQLQSEENLISFTPISKNIIIEKQLLQEPPVKTYKP
FT                 SHLRFHNSDEEEDIMEWMNLEPPMHEKVSTVIVHNNANNEREENKKKTTKE
FT                 VKDSDIIIESLKFEINRLRNQERVCALKWDEMSIKTYEEYSSKLDLIEGLV
FT                 DLGHLGRSSDKSKCVFVFCLDSLNAHHPWRQPLAYFLPGKCMKAEDIIILV
FT                 KECLDRLNETGADVQLLTCDQVHAQKRTFRPNNFEAMNVKRAFQLFSHTFA
FT                 AAIKTAGHEKELNTETWEATADFAEHLNNIIDACNSYSIKVRFGGKRPLSS
FT                 KNPDLNILLTDFTDWCSRWSKSPNKITQVPCFRGFVLTHLFSRLRQRGGFN
FT                 PNPTARMVRLSIRHIFSTGYIQTSDKGNVQCPESEALITQPSRLTKEVEKV
FT                 MSNTSTSIVEYDNFDSDLFLEDVELVGEYVDFEDIENINPLCGYDENAIAY
FT                 FAGFVARRNFAKTNCEDCRNDMIKTPMDDATASEKYIEFREYSNKDEDAPT
FT                 VTKLIRPTAAFTNITKTQLMTFTRMWQHHWASNLQCLLQNIVAECVHVTNK
FT                 SHAGWLDINHKCYNHRMEALKYMITVKIYSRTRYNNRAEKRNNTSNRKMKN
FT                 ILNK*"
XX
SQ   Sequence 3534 BP; 1338 A; 561 C; 596 G; 1039 T; 0 other;
     tatatataca tgcgcgaccg taacggaatg ttaactgcaa cagatttcgc cgcacggaaa        60
     aatgaagctc ttcaaaacaa atgaaaatct ccatacatct tggtctgcgc gaagagagat       120
     aagcatatgt tcgcgcaaag aaatagtcca acttgtcaca tttactgtgg ctagaaagtg       180
     tctatgcgtc tacaattatt attgtagccg ttacaaaaat ttgtgtccga gcattgtctt       240
     tcggtcccca aaaaaatatc aatactcggt gaacagaaat aaaaaatgta ataaaattat       300
     aaatacaaca tgtttgatta tccttttaat taattaaata aatatatatt aattcatccg       360
     ttgtatttca attattgctt tatgacaatt ttataaatgt atcttagaca cttcttcaaa       420
     ttattaaaaa aattcgtttt atttttcgtt ttcttatcat cctcattata acttttatta       480
     cttttacctg caaaaatttt tgattacacg aaaaatatat attttattgc gtatgaaatt       540
     taacatgatt tgtctgcatg gtttaatttc tctatttatt ttattattat tttatactgc       600
     ttcaagaaat atataatcgt caatattttt atttcattac tattataggg aatactaatt       660
     tagaaagatg gtctcccagt tccattcgac gtgctggatt gtgcgaagat cattttactc       720
     tagattcatt taatcccaaa agtataaaga aaggattaaa aagggatgca gtgccaattc       780
     catatcattt aagtgtctct caaaacaatt ccaaagaacc ttctagaaaa agaaaatttc       840
     aaatgacaca gagccttgcc taacagaaaa tatgaggcaa ctccaatctg aggaaaattt       900
     aatatcattt acgcctattt ccaaaaacat aataatagaa aagcaattat tacaagagcc       960
     tccagtaaaa acgtataagc catcacattt acgttttcat aattcagacg aagaagaaga      1020
     tattatggaa tggatgaatc ttgagccacc tatgcatgaa aaagtttcga cagttattgt      1080
     gcataataat gcaaataacg aaagagaaga aaataaaaag aaaacgacaa aggaagttaa      1140
     agactctgac attataattg aatctttgaa atttgagata aatcgattgc gaaatcaagt      1200
     aaaatgttta aaatatcgct tacgtatcgc tagaaaatgt agactgtcaa aaagatcaca      1260
     gtcaaagaaa aagatgctaa aaaaattgat acacgaacaa aatctgcatc ctgttgcaaa      1320
     agcaatgata aatttgcaac tacatacaag acgtgcacca tacacagaag aggaaaaaat      1380
     ctttcaagac aattatattt ctattcacct tctgcattct gtcgcttaag aaaagcggga      1440
     tgtaattttc ctggacaacg aaccattagg aggtggctag aagaatttaa tatacaacca      1500
     ggattttgcg attttatatt tgaaaaatta aaagaaaaaa tttctcatat tccgttagag      1560
     gaaagagtgt gcgctttgaa atgggacgaa atgtctataa aaacttatga ggaatattca      1620
     tctaaattag atttaattga aggccttgtt gatcttggac atttaggaag atcatcagat      1680
     aaatctaaat gtgtcttcgt gttctgttta gacagtttaa acgcgcatca tccatggcgt      1740
     caacctctag catatttctt accgggaaag tgcatgaaag cggaggatat aataatatta      1800
     gtgaaagaat gcctagatag attaaatgaa acaggagctg atgtgcaact tctaacatgc      1860
     gatcaagtac atgcacaagt aatcagagtg cttatgctca actgggcatt aatacagaga      1920
     aaccatattt tacacacaat gggaaaacat ataatgcttc atttgatttt ccacatttga      1980
     taaaaagatt ggcaagtttc ttgaggacac atacaaagct ttactgtgat ggaaaaatag      2040
     ttgcatcata ttcagatttc gaaatgacgt ggtctatcga caatgctaca aaaggaggct      2100
     caaatctgtt atctcacatt acagaagcgc acattccgtc cgaataattt cgaagcgatg      2160
     aacgttaaaa gagctttcca gttatttagc catactttcg cagctgcgat aaaaacagct      2220
     ggccacgaaa aagaattaaa tactgaaaca tgggaagcaa ctgccgattt tgcagaacat      2280
     ttgaataata ttatcgacgc ttgtaatagt tatagtatta aagttagatt tggcggaaaa      2340
     cgaccattgt cctccaagaa tcctgattta aatattctgt taacagattt tactgattgg      2400
     tgctcgagat ggtcaaaatc accaaacaaa ataacacaag ttccttgttt tagaggcttt      2460
     gttttaactg tatgagcgat tcttgcaacc tatgagagac ttgcaaatcg atttgaagga      2520
     tttgaacttg caacaggatt gtgtaaccaa gatttggtgg agcacttatt ttctagactt      2580
     agacaacgcg gaggatttaa tccaaatcca acggcaagaa tggtacgatt atccattaga      2640
     catatattct caacaggata tatccaaacg agtgacaaag gcaatgttca atgtccagaa      2700
     agtgaggctc ttatcactca accaagtcgt ctcactaaag aagtagaaaa agtcatgagc      2760
     aatacaagta cttccattgt agaatatgat aactttgaca gcgatttatt tttggaagat      2820
     gtagaacttg tgggggaata tgtagatttt gaagatatag aaaatataaa tccattgtgt      2880
     ggttatgatg aaaatgctat tgcatatttc gctggatttg tggcacgacg aaattttgca      2940
     aaaactaatt gtgaggattg ccgcaatgat atgataaaaa ctcccatgga tgatgcgaca      3000
     gcaagtgaaa aatatataga atttcgagaa tactcaaata aggatgaaga tgctccaaca      3060
     gtgacaaaat taataagacc aactgctgcg tttacaaata ttacaaaaac acaattaatg      3120
     acatttacac gtatgtggca acatcattgg gcatccaacc ttcaatgcct tcttcaaaat      3180
     attgtagctg aatgtgtgca tgttacgaat aaaagtcacg ctggatggtt ggatattaat      3240
     cataagtgtt ataatcatcg aatggaagct ttgaaatata tgattactgt aaaaatatat      3300
     tctcgtacga gatacaacaa tcgtgcagaa aaaagaaaca atacttcgaa tagaaaaatg      3360
     aaaaacattt tgaataaatg aaataaataa aataaaaaat gaacgttaca attcataatg      3420
     agataaaatc cataaaaaga gaacaataaa aaaatatctt gagcaccatt ttataagaaa      3480
     aggagagtaa agaagaaaca tgcacacata cacacacaca cacacacaca caca            3534
//
ID   P-3_AP      repbase;    DNA;    INV; 5564 BP.
XX
AC   Contig17451;
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 4)
XX
DE   P-like DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; P-3_AP.
XX
NM   P-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5564
RA   Jurka J.;
RT   "P-like DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1799-1799 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2752..3399,3372..3878,3865..4293)
FT                 /product="P-3_AP_1p"
FT                 /translation="MSQDELYCTLIFDEMKIKNYLESSKFLDVVEGFEDLG
FT                 PKGRSNKLAGQAMVFMIRGLYSSWKMPICYFLPATAMKNNILSDLIVEIVH
FT                 RLLNCGFFIKAVICDQGANNVSALKLLKVTKDKPFFEVDGRKMYSILDTPH
FT                 LFKNFRNHFIKNNFKFQNEEVSFQDVRNVYNIDKNSTTSRSLLKITENHIN
FT                 PGPFQMMSCKLAMQLFSNTMAATIKTQYNGCYDKNMTFVYTGELKSKTALH
FT                 KANMIKFLNDLLDVLNSKSLYNSNRFKCAISDTRPQQLQFLEKARSTFETL
FT                 EKMDVKNKKSKTTRPLCFDGMCWTINAIIMLYNEQKEIGFNFILTGRLNSD
FT                 VIENTFSIFRQRGGYNRNPTTRIFRTRFRRNAKMSLMKPSSRNHLVGSSNC
FT                 EPDDDTHLMTNKDNETRLLDMDSSFSSLSSVSMLGINNSLEEQEGLVNLEN
FT                 CSNTYFAGYLAMKCLLKFSCSNCEKIMIKSGTILNQLEYLIFCRNYDSKTS
FT                 KLHLKVPTTTITEFVISSQKILPKILEKNLIK"
XX
SQ   Sequence 5564 BP; 2128 A; 742 C; 769 G; 1925 T; 0 other;
     gcataatatg tgataatata ttaatattaa tatattatta ttttctatat tatatttcat        60
     gcaattaatt tgtcatcggt cctagagatc aaaatgttgt ggtttgaaaa ttgttttaat       120
     taaatgtatt gctttaataa gttatcatcg tatttttata attttaattt taatttgaag       180
     gaaataaagt ttattataga tgttttatat tatatcatat agttttaagc tgaccgttat       240
     atattttatt aagataggtt tctcattaaa ttacaacgta aataatttac ataatattta       300
     tttcacttat tttagtaaaa ttccagttga agacaattaa tcattgcaca ttcatttaaa       360
     ttgatataat atattgcaac cttacactta tttagacatt ctacgtttta ataaacttaa       420
     acaatcaaaa cataggttag ttataactta taataaataa taataataca aaattcatta       480
     ttattaatac aaatatataa aaattaatag ctaatcttaa aaaaaatcat ttaattctta       540
     tagtattcct attacaatat ttttataact atttttttta taaatacatt ttgtacattt       600
     aataacaatc ccaatattac agatgttcaa taccataata tctagtgata aattgtaaac       660
     gttatactga gataaaacga atatcggtcg gcgtcgccgc accgggtcgc gtatcttcag       720
     tttacggtct gctttcgtgt tgtaagctca cggtcgagca aatagccgtc cagttaaaaa       780
     ttgtgtaaaa ttaaattatt taaataaaaa aaaatcaaca aatttaaaat aaggcattcc       840
     agtgtacgaa ttattaaaaa atagggaaac caaaatacca atattcacac tagatgccgc       900
     aacaacagaa taaaaaaaaa cttaagtgat gaatatgagt ttatatatta tggacaaagt       960
     atatacaaat aataaaagaa gtctaagcca tgaatgttat tatttacaat aatcataata      1020
     taattttatt taatataata ttttaaatat tattaagaat ttttaatttt ttttttgatt      1080
     tttcacttct aacatgtttt aaattttttg aaaaccaatt aaaatttcta aaaagtatac      1140
     aaattatcaa atgattaatt aaaaattcta gatgtggaat acaatcttct tcaatactaa      1200
     gtgaatgcat taaatttgtt ttaatttgtt cgccaacaga ttgagcgaat tttattttat      1260
     gaggtttttt ttccaatatt ttagcaagta tttttttgag atgaaataac aaattctgtg      1320
     atggtagttg tatagtccgc gacacgaaaa gtggccggtg agtaccgtga cccgtagcgg      1380
     tttccctacc tgttagccat tggttctcaa cctataccgc atacagcgcg ggggtcgcag      1440
     tgccgggcgc ccgcgcgtaa tgtgagccac tgaggcgaaa cggccgctag gttcgcgatg      1500
     atcatcggcc acttttcatg tcgcggacta taggtacttt taaatgtaat tttgatgttt      1560
     ttgagtcgta atttctacaa aaaattaaat attccaattg gtttggaata gtaccagtat      1620
     atctatatat atatatgtat tagaccgaca ggtcactagc gtatgtcatg tacacttaat      1680
     aaaaaaataa tcctggcaag gtcgctgtaa acgtctcaca cggtggctta cccagattcg      1740
     gcgtggagct gaaaaacttt ggtgttaagg tcgccaaccc acagccgaga ttcggaaatc      1800
     ggagcgtgtg ggatttttaa ataataataa tagaaattgg gaaaggcaat aataaaatat      1860
     aattgatggg tgaattaaag gtaaatttat tttaaccgtt atggtaaaga ataatagtta      1920
     attttatgac caagaaaagc ctacaccggc ataaaaactt ggccgcaact cacatctaat      1980
     gaactatcac gtaggtatat ctgtgataat cattttttga tgaagattat acaaataatg      2040
     aaaaattaag attgactaga aatgcagttc ctataaagta taaagacttt gaacatttac      2100
     atgtatctac acccactaaa gtttaccaaa aaataggtgt tctaagtcca attgcaatag      2160
     aaactatttc aaaaaatgga tctcctagtg tatatgttcc aacaccaaat aaaagtcatc      2220
     tgactcagat aatattagat caacatcttc aactccagtt ttgacttcaa aaaccagaca      2280
     atttattgaa gaatcttacg aaccaactgg cttaaaacct aaaatattat tctgccacaa      2340
     caatgatagt aaaatatcaa aactaaagct tgctcttcaa cttaaaaaaa acaaatccgt      2400
     aacaaaaatg cctctttatt aaagttaaaa aaaatttgaa aatacttaga gaaagtaaaa      2460
     aaaataaaag tactttatta gattctttat actatccatc ttcagattct aaaacacttg      2520
     taaaaatgca ggtattaaga cctaaatttt caaggaaaag attcacaaaa aatgaaaaaa      2580
     attttgcttt aggtctattc tacaaatcac catctgctta caaattctta aaaaataaca      2640
     agcaattaac tctaactggt ttatcaacca tccttcgctg gattggaagt tcaaaattca      2700
     aaccaggatt taatgcagga atatttaaac agttaaaaaa aaagtgaatc gatgagtcaa      2760
     gatgaacttt actgtacttt aatctttgat gaaatgaaaa ttaagaatta tcttgaatct      2820
     tccaaatttt tggatgttgt tgagggattt gaagatttag gacctaaggg tcgatcaaat      2880
     aaattagctg gccaagcaat ggtatttatg attcgtggat tatactcttc ttggaaaatg      2940
     ccaatatgtt attttttacc agcaacagca atgaaaaata atatactaag tgatttgata      3000
     gtagaaatag tacatcggct attaaattgt ggatttttca tcaaagctgt aatatgtgat      3060
     caaggtgcca acaacgtatc agcacttaaa cttttaaaag ttacaaagga taaaccattt      3120
     tttgaggttg atggaagaaa aatgtattca atacttgaca ctcctcatct gtttaaaaat      3180
     tttagaaacc attttataaa aaataatttt aaatttcaaa atgaagaagt atctttccag      3240
     gatgttagaa atgtctataa cattgataaa aacagtacta caagtaggtc attattgaaa      3300
     ataacagaaa accacataaa ccctggacct tttcaaatga tgtcttgcaa attagcaatg      3360
     caactgttta gcaatacaat ggctgctacg ataaaaacat gacgtttgtg tatacggggg      3420
     agctgaaatc caaaactgct cttcacaaag caaacatgat aaagtttttg aatgaccttc      3480
     ttgatgtttt aaatagtaaa agtttataca actcaaatcg atttaagtgt gcaatatctg      3540
     atacaagacc acagcaactt caatttcttg aaaaagcaag atcaacattt gaaactttag      3600
     aaaaaatgga tgttaaaaat aaaaagagta aaactacccg acctctatgt tttgatggta      3660
     tgtgctggac aataaatgca attataatgc tgtataacga acaaaaagaa attggcttta      3720
     attttatttt aactggacga ttgaattcag atgttataga aaacacattc tccatttttc      3780
     gacaaagagg aggatataat cgaaacccta ctactagaat ttttcgtaca aggtttagac      3840
     ggaatgccaa aatgagttta atgaaaccat ctagtaggta gttcaaattg tgaacctgat      3900
     gatgataccc atttaatgac caataaagac aatgagacaa gattgcttga tatggacagt      3960
     agcttttctt ctttatcatc ggtttcaatg ttgggtatca ataattcact ggaagaacaa      4020
     gaaggtttag taaatttaga aaattgttca aacacttatt tcgctggata tttagccatg      4080
     aagtgtttat tgaagttttc ctgttcaaat tgtgaaaaaa taatgataaa atctggtact      4140
     attctaaacc aattggaata tttaattttt tgtagaaatt atgactcaaa aacatcaaaa      4200
     ttacatttaa aagtacctac aactaccatc acagaatttg ttatttcatc tcaaaaaata      4260
     cttcctaaaa tattggaaaa aaacctcata aaataaaaat cgctcaatct gttggcgaac      4320
     aaattaaaac aaatttaatg cattcactta gtattgaaga agattgtatt ccacatctag      4380
     aatttttaat taatcatttg ataatttgta aactttttag aaattttagt tggtgttcaa      4440
     aaaatttaaa acatgttaga agtaaaaaat caaaaaaaaa aaattaaaaa ttaaaaataa      4500
     tatttaaaat attatattaa ataaaattat attatgatta ttgtaagtaa gaacattgat      4560
     ggtttagact tcttttatta tttgtatata ctttgtccat aatatataaa ctcatattca      4620
     tcacttaagt ttttttttat tctgttgttg cggcatctag tgtgaatatt ggtattttgg      4680
     tttccctatt ttttaataat tcgtacactg gaatgcctta ttttaaattt gttgatttta      4740
     tttttattta aataatttaa ttttacacaa tttttaactg gacggctatt tgctcgaccg      4800
     tgagcttaca acacgaaagc agaccgtaaa ctgaagataa cgcgacccgg tgcggcgacg      4860
     ccgaccgata ttcgttttat ctcagtataa cgtttacaat ttatcactag atattatggt      4920
     attgaatatc tgtattctgt aatattggga ttgttattaa atgtacaaaa tgtatttata      4980
     aaaaaaatag ttataaaaat attgtaatac tataagaatt aaatgatttt tttttaagat      5040
     tagctattaa tttttatata tttgtattaa taataatgaa ttttgtatta ttattattta      5100
     ttataagtta taactaacct atgttttgat tgtttaagtt tattaaaacg tagaatgtct      5160
     aaataattaa tgtgtaaggt tacaatatat tatatcaatt taaatgaatg tgcaatgatt      5220
     aattgtcttc agctggaatt ttactaaaat aagtgaaata aatattatgt aaattattta      5280
     cgttgtaatt taatgagaaa cttatcttaa taaaatatat aacggtcagc ttaaaactat      5340
     atgatataat ataaaacatc tataataaac tttatttcct tcaaattaaa attaaaatta      5400
     taaaaatacg atgataactt attaaagcaa tacatttaat taaaacaatt ttcaaaccac      5460
     aacattttga tctctaggac cgatgacaaa ttaattgcat gaaatataat atagaaaata      5520
     ataatattat attaatatta atataatatt atcacatatt atgc                       5564
//
ID   P-3_DRh     repbase;    DNA;    INV; 1566 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.08, Created)
DT   28-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1566
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1417-1417 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..1278
FT                 /product="P-3_DRh_1p"
FT                 /note="transposase."
FT                 /translation="MSVKLATQVFSNTVSHGINVLRMAGTLESSVNAIATS
FT                 EFLKQMNDGFDLLNEGTYRSDNDMKSKLENFMSFLDKIKFLPDRNTGKNST
FT                 ATCVIKLKASCQRIINVCDKLLESESIQYIRLNRFCQDPLENLFGLLRSKF
FT                 GNFTNPTAQQLLYALKNLWATKIINEHTLKNTNCIPDSDISLDWSYEPGMM
FT                 QDIQKSKTELESCAEMAVVQVVNPAVQLAIEPRESACPNEKLGERNAVRYF
FT                 LGYVILKKLNADNCPECTKSLACLDDMKSKTEQFIKAKNYSSHELYLKNPS
FT                 DAMFEITLHHVYIFDTEFKERPNRRTISEFLEQKCIEETNKIYPCWFAPTD
FT                 PCAKHRKSILKHLLKVLLYKHSKWYHEKWDANQKLKDRVGRACKRSMITDK
FT                 NCXKTKKLTIYNISKNSLXIF"
XX
SQ   Sequence 1566 BP; 584 A; 250 C; 275 G; 455 T; 2 other;
     gataagcaca ttgatccaaa taattttcaa aaaatgagtg taaaattggc gacacaggtg        60
     ttttcaaaca ctgtaagcca tgggatcaat gtgttgagaa tggctggaac cttagaaagt       120
     tctgttaatg ctattgcaac atccgagttt ctgaaacaaa tgaacgatgg ttttgacctt       180
     ttaaatgaag gcacctatcg ttcagataat gacatgaaat ccaagctgga aaatttcatg       240
     agtttcttgg ataaaataaa atttttgccg gaccgcaata ccggcaaaaa ttcaactgca       300
     acttgcgtta taaaactaaa agcaagctgt cagagaatta taaacgtatg tgataaactt       360
     ttggaaagtg aaagcataca atatatacgt ttaaatcggt tttgccaaga tccattggaa       420
     aatttatttg ggttgctaag atccaagttt ggaaatttta ccaatccaac agcacagcaa       480
     ttattatatg ccttgaaaaa tttgtgggct acaaaaataa taaatgagca cacactaaag       540
     aatacaaatt gtattccaga ttctgacatt tccttagatt ggtcatatga acccggaatg       600
     atgcaggata ttcaaaaaag caaaacagaa ttggaaagct gtgcagaaat ggcagtagtt       660
     caagtagtta atccagcagt tcaattggct atagaaccaa gagaaagtgc ttgccctaac       720
     gaaaagttag gagaacgtaa tgctgtaaga tatttcttgg gctacgttat tttaaaaaaa       780
     ttaaatgcag ataattgccc cgaatgcaca aaatctctgg cttgccttga tgatatgaag       840
     tcaaaaactg aacagttcat caaggcaaaa aattacagtt cccatgaact atatttaaaa       900
     aatccttctg atgcaatgtt tgaaataaca ttgcatcatg tttatatatt tgatacggaa       960
     tttaaggaac gtccaaaccg acgaactatt tccgaatttt tagagcagaa atgcatagaa      1020
     gaaaccaata aaatatatcc ttgttggttt gctcctactg acccatgcgc taagcacagg      1080
     aaaagtattt taaagcattt gctgaaagtg ttattataca agcacagtaa gtggtaccat      1140
     gaaaaatggg acgccaacca aaaacttaaa gacagagttg gcagagcatg taaaagaagc      1200
     atgattaccg acaaaaactg tcmaaaaaca aaaaaattaa caatttacaa cataagtaag      1260
     aattctcttt twattttcta attaatttaa gttatcattt taaattgttg ggcagttttc      1320
     aaaaactgtc cgatctaccg tcttttcaag caattgaaaa gaaatgatcg ctgatgagga      1380
     agagtggtgt cttccgaaac agtatttgaa atataaaatt aataaacaga ataaacttct      1440
     ttggcttttc ttttccccta ctacatatgt gcaggtaaat ttgtcacaaa aaaattttaa      1500
     gacatgtgac tgaattaaac ataaagtttc aggatttgtg gttcgatttc caaatccatc      1560
     acttaa                                                                 1566
//
ID   P-3_DTa     repbase;    DNA;    INV; 3437 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; P-3_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3437
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed, fragmental sample sequence. Both ends are
CC   truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(885..1340,1238..1762,1766..2392,2401..2616,
FT                 2620..2880)
FT                 /product="P-3_DTa_1p"
FT                 /translation="MLLKDKKGTNMRWNDSEKLFAQSIYYRSTSTYMFLRD
FT                 SLQLNLPSPSSLQKWNSIKKLQPGDNECLYSALKDTIKEMTESDKECIQTC
FT                 HEVAIKKNLTYNMSVDIIDGLEHLHERSNKMGSHICVFVIRGILRKWKFIL
FT                 NYFVPETNIKGNVNGKPHLRICYTGYFKKMEIYIKLFRTRNKHKGECLKSL
FT                 ICKYINIAENIGFKVRGVVYNQGGNNRKCTSLLEVTNEKPYFSFNNKKYYM
FT                 FFDIPHLFKSIRNNFLKAQLETPDGLVDFDVIREVYELEQGSVTRMTKLTR
FT                 SHVNPTRFEQMRVCLEFSHTVAAAIKTCNQNKQFHNSPEVAASTAAFVQKV
FT                 NDYFDCLNSRVLTDKNPMKCALKINNIVWNKLKEMQEYLRNMKYLGNNIYC
FT                 LDGLLQTTEAMFGHVEDIFKDHKDHFFFLTSRVNQDPLKNIFACVRAKGGN
FT                 CRNPSVNELNLIIAKQISLHIFKISQKSNCEADDDVMLPVEFDSIIYQPCI
FT                 ENKEIQQQEFLCRLQKLYKEMKGTLTKILILFWPKMYLLNSRYFVGYIAKG
FT                 SSCDKCIKFLLEETEDLTAPSELFIHEKNYSSDSDFGKLKAPSDLFFNVCK
FT                 IHIKVFENIFSNKNQLCIKQFIVEKCIKCTNESSDYSLWFDTNNECYVHKI
FT                 DLLNKLIKVLLFKHCKWTVIADRKKSKLNSVFYLISKTTTAAISKR"
XX
SQ   Sequence 3437 BP; 1303 A; 524 C; 582 G; 1028 T; 0 other;
     ttttctgttt cccctttggg tttctcttct tacgttcgct taaagcctac aagtacatag        60
     agctccccga tttctacgat tttcaaagat tttgaccgtt taaacgctat cccaataata       120
     taaagttgat ccgctgcatc agtgccattt acgaaataaa agtgtgtgta ttaattgtgc       180
     aaaacaaagt aagaaaagaa atatacaata gttcacgaca ttgtgtaatt ttgcgcgcta       240
     attttacgtg ctggtggtgc tgctgtttat tgacacaggt ttgagttgca aaagattatt       300
     tatacacata agttttaatt ggccctaatt gctatggccg agaaaaaaag gtcacagatt       360
     agtggaaaca gattcagcct gtcccactgc cagaaatcac ggcgcgattt ccccctcctt       420
     aaattaggtt tccagaaaaa gatccatcaa ctttaatgaa atgggcggaa gtgtgcaaat       480
     tttctgaaga gtattgtttt tatgccaaga tcatttctcc ccagatgata ttgggttaaa       540
     atatctaaag aaaggagcag ttcccgatcg caacctaata aacgattgca gttccgataa       600
     tgattatatt aattttaatg ttcttagatc acccccacga aaaagacctc gctcacagtc       660
     ccctgctgaa gtttgtcgtc agtgccaaaa aagcataaaa acattaaaag agtttcaaaa       720
     aaaatattac acttataaaa agttgtctga tgaaagacaa gcacggatta agaaaatttg       780
     aatcttaaac gaaaggtgat caggttgaaa tccaagtctg aaaaatacat actttcggaa       840
     attgataaaa aaatctaacg ggaaattaaa aaatactatt aaaaatgctt cttaaggata       900
     aaaagggaac aaatatgaga tggaatgatt ccgaaaaatt gttcgctcag agcatttatt       960
     acaggtctac atcgacatat atgtttctaa gagactcatt acaattaaat cttcccagtc      1020
     catcgtcttt acaaaagtgg aacagcataa aaaaattaca gccgggagac aacgaatgtc      1080
     tgtactcagc ccttaaagat actattaagg agatgactga atctgataaa gaatgcatac      1140
     agacttgtca tgaagttgca atcaagaaaa acttaacata taacatgtct gttgatataa      1200
     ttgatggctt agagcattta catgaacgct cgaataaaat gggaagccac atttgcgtat      1260
     ttgttatacg gggtatttta agaaaatgga aatttatatt aaattatttc gtacccgaaa      1320
     caaacataaa ggggaatgtt taaaaagcct tatttgtaaa tacattaata ttgctgaaaa      1380
     tattgggttt aaagtaaggg gcgtagtata taatcaagga ggtaacaata gaaaatgtac      1440
     ctcattactt gaagtcacaa atgagaaacc ctactttagc ttcaataata aaaaatatta      1500
     tatgtttttt gacattccgc atcttttcaa atctataaga aataattttc tgaaagctca      1560
     gcttgaaacc cctgacggac tggttgactt tgatgtcata cgagaggtat acgaattaga      1620
     acagggctcg gtaacgagaa tgactaaatt aacaagaagt cacgttaacc caactagatt      1680
     tgaacaaatg cgggtatgtt tggaatttag tcacactgtt gcagcggcaa ttaaaacttg      1740
     taaccaaaac aaacaattcc actgaaatag tcccgaagtg gcagcctcta ctgctgcatt      1800
     tgtccaaaaa gttaatgatt attttgattg cttgaatagc agagtactaa ctgacaaaaa      1860
     ccccatgaaa tgtgcactta aaattaacaa tattgtttgg aataaactaa aggaaatgca      1920
     agaataccta aggaacatga aataccttgg aaataatata tattgtcttg atggcttgct      1980
     ccaaactact gaggcaatgt ttggacacgt cgaagatata tttaaagacc acaaggacca      2040
     ctttttcttt ttaactagtc gagtaaacca ggatcctctt aaaaatatat ttgcgtgtgt      2100
     tcgtgcaaaa ggtggtaact gtagaaaccc ttcagttaat gaacttaatt taatcattgc      2160
     caaacaaata tctttgcaca tttttaaaat ttcccaaaag tcgaattgcg aagcagatga      2220
     tgatgttatg ttaccagtag agtttgattc aattatatat cagccttgca ttgaaaacaa      2280
     agaaatacag caacaagaat ttctgtgtcg tcttcagaaa ttgtacaagg aaatgaaagg      2340
     tactttgaca aaaatattga tacttttttg gccaaagatg tacctattga attaatatga      2400
     agtagatatt ttgttggata cattgcaaaa ggatcaagtt gcgataaatg tataaagttc      2460
     cttctagaag agacagagga tttaacagca ccatcagagc tttttataca tgagaaaaac      2520
     tactcgagcg actctgactt tggaaaatta aaagctccat cagatctttt ctttaatgtt      2580
     tgcaaaatac atataaaagt ctttgaaaat atattttaaa gtaataaaaa tcaactgtgt      2640
     ataaaacaat ttattgtgga gaaatgcatt aagtgcacaa atgaaagtag tgattactca      2700
     ttatggtttg atacgaataa tgaatgttat gtgcataaga tagatctcct aaacaaactt      2760
     attaaagttt tactatttaa gcattgcaaa tggactgtga tagctgacag aaaaaaaagc      2820
     aagctaaact cagtattcta tctcataagt aaaacgacga ctgcagcaat tagtaaaaga      2880
     taaaattata ccttttggtt aaaaatttat taatgtaata aataccctta aataatattt      2940
     aatacaaatt aagtaaataa gtaaaaaaaa ccgaaaaagt aagcaattaa gaaaatatat      3000
     aacaaaaagc aatagttaga aaactagctt ttttggggaa catggaaatg ttataatgtg      3060
     taagattaaa gcatttcaag tcgactcgaa ggtcatataa atttatgacc ccgttacaat      3120
     tgtaatggcc tccccgtggt gtttcctggg tacctgttat atatatgcat atataaatta      3180
     aattatatat tattaaatat aaacattagt aaaaatatat gtacataaat gtaagcggta      3240
     gcgaattcga gcggcgattt tacctaattt gtattaggaa aacttcttaa aaatgaattg      3300
     taggcgacac caataaataa gtaacatttt actgaaaaat ttaaaaaaaa tgacagcgaa      3360
     aaaacaatgt aaaaaatata ttaaaacgct ttcgacaact ttgaaaaaag ttataaatag      3420
     gatattctgt agattag                                                     3437
//
ID   P-4_AP      repbase;    DNA;    INV; 4074 BP.
XX
AC   Contig40297;
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 4)
XX
DE   P-like DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; P-4_AP.
XX
NM   P-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4074
RA   Jurka J.;
RT   "P-like DNA transposons from pea aphid.";
RL   Repbase Reports 9(8), 1800-1800 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           2565..3383
FT                 /product="P-4_AP_2p"
FT                 /translation="MFEIAAKLFTENLNFKYILTYYFSQDHIELLFGRIRQ
FT                 RYGANNNPNVIQFKTAIKQILLKNAITCSTNNNCNTFDEDIISTIFPFKWN
FT                 KNKNNVLPLAVAGDDNEDDKMEILNTCDLLNNTNSSYEDCKKNIIYYITGY
FT                 AIKKNIFILDCNSCKQSLIKPTSDHNYNHSADYSKFIDFKNNGGLISPSES
FT                 SFKVVYQTEIFLLSLTNNLQTLNIPNLDLKITSLVNKKFALDKNIFKYLEC
FT                 NNVFTLDRPHKLVLIALLIQKYLSIRLPTFIW"
FT   CDS           join(385..648,652..1482,1486..2538)
FT                 /product="P-4_AP_1p"
FT                 /translation="MNLNNNNNNNKIHVLCYYFVIIYEQILHIKHTVFYFI
FT                 NINCDTCIRLTVSTVVIIFFKYILHITMVYYCCAWGCSNKRVPNSGIHFFA
FT                 VYLKKTDINETYKLIISKIVSFPLKNKERTENWLKNINRKGFIPSEYSRLC
FT                 SKHFLPSDFKPYNKENGRLRLNDNAIPSVFNSTTEEVHCQSIIENYEVEVE
FT                 VPLDLSMSKLDEELPVALQRSVLVSDIITTPRKKTTVLFPELQITPKRPSC
FT                 RTPKRGRPQNSIVTPKTKKNKTKLKTLQKKVLRLKKRINNLKELLQDIKEK
FT                 GLIEKNGFNVILEDFDGMSREIFNNQLKNKNKNAKGRRYSDELKKFALTLN
FT                 YYSPKAYKYCRLVCISKILFIKYIILNTIFFSSTIFKLPHPTAIRSWTSSV
FT                 NGEPGFFSEVFLFLKTLEIENKECNLVFDAMCIKKQVIWDKQAHKFTGYCD
FT                 YGDNLTVESSETAATEALVFMLVSLNGKWKLPIGYFLQNKTNAVRQAELIK
FT                 TALTLSHQSGLNVRGITCDGAFTNFSTLKILGCEFGEGFDNIKSWFSHPID
FT                 GSQIFFIPDACHMIKLARNTLGNCLVIESNTGHIKWCYFEYLHEIQSNLSL
FT                 KFANKITGVHLNWKSNKMKVKLAVQLLSSSTAKAIQYLKDNNYKQFKDSDE
FT                 TIVFCQRLDQLFDFLNSRNPFSKGYKSPIFKSNLKFLKSKIIPFINYLYSL
FT                 KYKNKLLFTTNKKHLF"
XX
SQ   Sequence 4074 BP; 1584 A; 531 C; 535 G; 1424 T; 0 other;
     cacagatata taaaaatact agatagccga cttctatagt acatacgtat aaaataatgt        60
     ctccaacaaa atggccgcca atcgttatct aagaggtgac tgtttgcaaa tttaactgat       120
     atgataagtg ataagatact attttggagg gctataatat tttaaatttt gttgagacgt       180
     aagacttaag aaaatttttt ttccgaatta tatttatctg gaactatttg gttagagcta       240
     aaattcggaa ccttttatta tttataataa taaatttaaa tttaaatatt atattttatt       300
     gtatttgcat gtaattacat agaacaatat ggtaatcgcg agttatttat aactatttag       360
     catctcaaac gcataaacaa cttgatgaat cttaataata ataataataa taataaaata       420
     catgtattat gttattattt tgtaattata tacgagcaaa tattacatat taagcatact       480
     gttttttatt ttataaatat aaattgtgat acatgtataa gacttacagt aagtacagtt       540
     gttattatat tttttaagta catactacat attactatgg tttattattg ctgtgcttgg       600
     ggctgttcaa ataaaagagt gcctaacagt ggcattcatt tttttgcgta agtatattta       660
     aaaaaaactg acatcaatga aacttacaaa ctaattattt ccaaaattgt cagctttcct       720
     ttaaaaaata aagaacgtac tgaaaattgg ttaaaaaata ttaataggaa agggtttatt       780
     ccatctgagt atagtaggtt gtgtagtaag cattttctcc ctagtgattt taaaccttat       840
     aataaggaaa atggtcgttt acgtttaaat gataatgcaa taccatcagt atttaattca       900
     acaactgaag aagttcattg ccagagtata atagaaaatt atgaagttga agtagaagtt       960
     cctcttgatt tgagtatgtc taagttagat gaagaacttc cagtcgcact tcagagatct      1020
     gtattggtca gtgatattat aactacacct agaaaaaaaa caacagtatt atttccggaa      1080
     cttcaaatta cacctaaaag accatcatgt agaacaccaa aaagaggtag accccaaaac      1140
     tcaattgtca ctccaaaaac caaaaaaaac aaaacaaagc ttaaaacatt acaaaaaaaa      1200
     gtacttagac ttaaaaaaag aattaataac ttaaaagaac ttttacaaga cataaaagag      1260
     aaaggtttaa ttgaaaaaaa tggttttaat gtcatattag aagactttga tggcatgtct      1320
     agggaaatct tcaataatca gttgaaaaac aaaaacaaaa atgctaaagg tcgaagatac      1380
     agcgatgagc ttaaaaaatt tgcacttact ttgaattatt actctccaaa agcttacaag      1440
     tactgtcggt tagtatgcat ttcaaaaatt ctctttatta aataatatat tattttgaac      1500
     acaatttttt tttctagcac aatatttaaa cttcctcatc ctacagcaat aagatcttgg      1560
     acttcatctg taaatgggga acccggtttt ttctctgaag tttttctttt tttaaaaact      1620
     ctagaaatag aaaataaaga atgtaatctt gttttcgatg caatgtgcat aaaaaagcaa      1680
     gtcatctggg acaaacaagc acataaattt acaggatact gtgattatgg tgataatctt      1740
     acagttgaaa gtagtgaaac agcagccact gaggcattag tttttatgct cgtaagttta      1800
     aatggtaagt ggaaactacc aattggatat ttcttacaaa ataaaactaa tgctgtgcga      1860
     caagcagaat taattaaaac agcacttaca ctgtctcacc aatcaggact aaatgtaaga      1920
     ggtatcacct gtgatggggc atttacaaat ttttcgacat tgaaaatttt gggatgtgaa      1980
     tttggtgaag gatttgataa tatcaaatct tggtttagtc atcctatcga tggatcacaa      2040
     atttttttta taccagatgc atgccatatg attaagttgg cacggaatac gttaggaaat      2100
     tgtttagtta tagaatctaa tactggtcat attaaatggt gttattttga atatttacac      2160
     gagattcaat caaatttatc tttaaaattt gcaaataaaa taactggtgt acatttgaat      2220
     tggaaaagta acaaaatgaa agtgaaattg gcagtccaac ttctaagctc atcaacagct      2280
     aaagcaattc aatacttaaa agataacaat tataaacagt ttaaggatag tgatgaaact      2340
     attgtttttt gtcaaagatt agatcagtta tttgattttt taaattccag gaatccattt      2400
     tcaaaaggtt ataaaagccc tatttttaaa tcaaatctaa aatttttaaa atctaaaata      2460
     attcctttta ttaactattt atacagtctt aagtataaaa acaaactgct tttcactaca      2520
     aacaaaaaac atttatttta gggtttgcaa ttggtgtaaa atcaatgttt gaaatagctg      2580
     caaaactgtt tacagaaaat ttaaacttta agtacatcct tacatattat ttttcacaag      2640
     atcatattga attgttattt ggacgtatac gtcaaagata tggagcaaat aacaatccca      2700
     atgtgatcca atttaaaact gcaataaaac aaatattatt aaaaaatgct attacatgtt      2760
     ctactaacaa caactgcaat acttttgatg aagatataat atccacaatt ttcccattta      2820
     aatggaataa aaataaaaat aatgtactac ctttagcagt agctggagat gataacgaag      2880
     atgataaaat ggagatttta aatacatgtg atttattgaa taatacaaat tctagttatg      2940
     aggactgcaa aaaaaatatt atatattata ttactggcta tgcaattaaa aaaaatattt      3000
     tcatattaga ttgtaacagt tgtaaacaat cacttataaa acctacaagt gaccataact      3060
     ataatcattc agcagattat tctaaattta tagattttaa aaataatggt ggtctaatat      3120
     ctccctcaga aagttcattt aaagttgtct atcaaactga aatatttctt ttaagtttaa      3180
     ctaataattt acaaacacta aatataccaa accttgactt aaaaataact tcccttgtta      3240
     ataaaaaatt tgcattggac aaaaatatat ttaaatattt agaatgtaat aatgttttta      3300
     cattagatag accccataaa ttggttttaa ttgcattgct tatacaaaaa tatttaagca      3360
     taagattacc tacattcatt tggtaaaatg tattctacag atattttaaa cccaataagt      3420
     aaccgtcata aattgacgaa acaaatttta tttatgaatc aataatattg ttgtatctat      3480
     acctacgaga tgtagtttaa aatatctatt atttctttag ttatgtatta taatttaatt      3540
     ttagtaaacc caaggaatgt acttatgttg aaaaatctaa atttaaaatg tattttaatt      3600
     ttattaagat taaataattt actttatatt attaatttac tgattaaata aagcacttgg      3660
     taattttttt ttttaattgt tatactttat tagaaattat atccctcggt atactggtat      3720
     ttttattaca ataaattatt ttttgactca cacatgtatc tttgaagctg taccaatctt      3780
     caagaacaca agcaagataa ttgatgaaaa tttttcttgc ataaaccata tataaaaact      3840
     taactccact caaaatctgt ataaaataat aattgttttt aaagtttatt aagtataaac      3900
     aatataatat tttaattata agtacaatag tatattgtat aacactgttc ttcaattgct      3960
     tatcatcaat aatataaaac ataaacattc acctcttaga taaggatggc ggccatttta      4020
     ctggcgacaa taataatatc gaagtcggct atctagtatt tttatatatc tgtg            4074
//
ID   P-4_DTa     repbase;    DNA;    INV; 2899 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: a sample
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; P-4_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2899
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. 8-bp TSD.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(132..422,426..1232,1177..1956,1971..2708)
FT                 /product="P-4_DTa_1p"
FT                 /translation="MTFCNFCRKHVHGVKFMNAPKCLTKRTLWEEALGCKL
FT                 GEKSKLCETHFKSSDWKSAPIKGKVYKRSRLINDAVPQKENEPEPKIVKLG
FT                 YSESATQTEAKCVKINKYMLKKDFLKFRDKVIDRALALENEKQRKKIRLME
FT                 KDISSLRQQLEEYKELEKSLATIFTETQIHILKNGGKRALFNPTDMSSAIC
FT                 LHAAGPRAYNHLYRKGFPLPSRATLYRWLADVKINAGTLDIVIDLMENEEL
FT                 TEVDKLCVLSFDEMKVAEAFEYDSTADVVYEPSNYVKLAIVRGLKKSWKQP
FT                 VFFDFNTRMDQDTLNSIITKLHNKGYPVVAIVSDLGPGNQRLWKELGLSES
FT                 KFHIKNNTEDKFKFIFFFSQDVVKIIQKINSNSFFSLAKTWFSHPADENLK
FT                 IFVFSDTPHLIKLVRNHYVGSGLVINGKSLTKATVQQTISHCSKSDVSILF
FT                 KITDNHINVGSLAKQKVKLATQLFSNSTASAIKRCYALGYDVDNACETADL
FT                 FKLLNDWFDVFNSKMSTANSIETTKPYAKEIEIQRGILAKMSEIMRTNIVG
FT                 KTHKLPFQKGILFNNASLDGLYGYLSEKYDMKYILTSRLNQDVVENFFGAM
FT                 RSKGGQYDHPTPLQFKYRLRKYITGMTKQINLIILIVKCLALCFSKDWIVI
FT                 VCSFYLYYVLCFVIYVSLNILSLFCLVNNPYFYLAKNTEMLSNNQNVDEDN
FT                 SDTWLNLDLTSQSNQSSQSNVNDLEDFEADIINSIPANIELDELTEDAIEY
FT                 IAGYVIKKMRLFNEIAKNTSFTYVDEVSHGGLIKPSNNFMDKIKELEFVFS
FT                 HVVSDYFSITKNLKQKLLIAATNVNINLDIKKFYFKIRIYFKIKNLNKKIA
FT                 IQKQKQRLISNSKLLKIKL"
XX
SQ   Sequence 2899 BP; 987 A; 510 C; 544 G; 858 T; 0 other;
     catggtacaa ttatacaagg tagtctcgtc ggctgcctaa tcgttcggct ttttgtcagt        60
     gcgttctcgc ttgttgaagg gaaaggtcgg gtgcggacga ttgttttcag aatattaacc       120
     cttgagtaaa gatgacgttc tgcaactttt gtcgaaagca cgtgcatgga gttaaattta       180
     tgaatgcacc aaaatgttta acaaagagaa cattgtggga ggaagccctt ggctgcaaac       240
     ttggagaaaa gtccaagctt tgcgaaactc atttcaagtc ttcggactgg aagtcggcac       300
     caataaaagg gaaagtttac aagagaagtc gactaataaa cgatgctgtt cctcaaaagg       360
     agaatgagcc cgaaccaaaa attgtaaaat taggctactc agagtcagcc acgcaaacag       420
     agtaagctaa atgtgttaaa ataaataagt atatgctaaa aaaagatttt ttgaaattta       480
     gggacaaagt tatagatcga gcactggctt tggagaacga gaaacagcga aaaaagattc       540
     gtttaatgga aaaggatatt agttctttac gacagcagct tgaagaatat aaggaattag       600
     aaaaatctct tgctaccatt tttacggaga cccaaattca catattaaag aatggaggaa       660
     agagggcctt gtttaatcca acagacatgt cttctgctat ctgtcttcat gccgcaggac       720
     ctcgtgcgta caaccatcta tatagaaagg gattcccttt gcctagtcgg gcaacattat       780
     atagatggtt ggcagatgtt aaaattaatg ccggtactct tgatatcgtg atagacctca       840
     tggaaaacga agaattgaca gaagtcgata agctctgcgt tttgtccttt gatgaaatga       900
     aggtggctga agctttcgag tatgacagca cagcggatgt tgtatacgag ccgagcaact       960
     atgttaaact ggctatagtt cgtggcctta agaaatcatg gaaacagcca gtattctttg      1020
     attttaatac tcgaatggac caggatactc ttaactcgat tataacgaaa ctacataaca      1080
     aaggatatcc cgtagtagct attgtttctg atttgggccc tggaaatcaa agattatgga      1140
     aagaacttgg cttatcggag agtaagtttc atataaaaaa taatacagaa gataaattca      1200
     aattcatttt tttctttagc caagacgtgg tttagccatc cagcggatga aaatttaaaa      1260
     atattcgtgt tctcagatac gccacatctg ataaagttgg ttcgcaacca ctacgttggc      1320
     tccgggttgg ttatcaacgg aaaatcatta actaaggcaa ctgtccagca aacaattagc      1380
     cactgttcga agtcagatgt gtcgatacta ttcaagatta ccgataatca cattaacgtt      1440
     ggatcgctcg ccaaacaaaa ggtcaaattg gcaacacaac tcttctccaa ttcaaccgcc      1500
     agtgctatta aaagatgcta tgcattaggt tacgacgttg ataacgcatg cgaaaccgct      1560
     gatcttttta agcttctcaa tgactggttc gatgtattca actcaaaaat gtctacggca      1620
     aattctattg aaaccactaa gccctatgct aaagaaatag agattcaacg aggcattttg      1680
     gcaaaaatgt cagagattat gcgcacgaat atagttggta aaactcacaa gctgcccttt      1740
     caaaaaggaa ttttatttaa taatgcatcc cttgacggct tgtatggata cttatcggaa      1800
     aaatacgata tgaaatatat cttaactagt cgtcttaacc aagacgttgt tgagaatttc      1860
     tttggtgcga tgcgttcaaa aggtgggcaa tatgaccatc cgactccact tcagtttaag      1920
     tataggttaa gaaaatacat aacaggtatg acaaaataaa ataataataa caaattaact      1980
     taataatact aattgtcaaa tgtttagctc tatgtttcag caaagattgg atcgtgattg      2040
     tttgtagttt ttatctgtat tatgtgttgt gttttgtgat ttatgtttcc cttaacatct      2100
     tgtccctttt ttgtttagtt aataatcctt atttttattt agccaagaat acggaaatgt      2160
     tgtccaacaa tcaaaatgtt gatgaagaca acagcgacac ttggttgaac cttgacctaa      2220
     catcacagtc aaaccaaagt tcacaaagta atgtgaacga tcttgaagat tttgaagctg      2280
     acattattaa tagcattcca gctaatattg aattagacga gttgacggag gatgccattg      2340
     agtacatagc aggctatgtt attaaaaaaa tgcgactttt caacgagatt gccaaaaaca      2400
     catcgtttac ctacgtagac gaggtttcgc atggaggact tataaaacca tccaataatt      2460
     tcatggacaa aattaaagag ttggaatttg tcttttcaca tgtcgtttca gactatttta      2520
     gtataacgaa aaatttaaag cagaaactat taatagctgc tacaaatgtt aacattaatt      2580
     tagatattaa gaaattttac tttaagattc gcatttattt taaaattaag aacctgaaca      2640
     aaaaaatagc tatacaaaaa caaaaacaac gattaatttc aaactcaaaa ctattaaaaa      2700
     ttaaattata aaaaacttca actctttttt tctataaatg aacaatttaa gccccatgca      2760
     ccatttaagg gttaaacaac aagctctatt gccgtttcac tcgcacttac tacgcacact      2820
     cctctcactc gcacttgttg taagtattgt taacggactg ctttttgccg acgagactac      2880
     cttgtataat tgtaccatg                                                   2899
//
ID   P-N1_DEl    repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   30-JUN-2021 (Rel. 26.08, Created)
DT   30-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-353
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4035-4035 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 7-bp TSD is observed in some loci.
XX
SQ   Sequence 353 BP; 89 A; 80 C; 91 G; 91 T; 2 other;
     catagagtaa gaactatata gaggcaccat ttgctctgcc gctctctcga gtgacttttc        60
     cagtgatgcc acctagacta aaaaagggga aaatttcagt ctctcacggt tcgattcgaa       120
     cctttaattc ggtcccgcgg tgagtttctg cakctgaact gctcgctctc attgctaagg       180
     gctggtgcga gcagtgcagt tgcaagttcg ctgcgggacc gaattgcaag ttcgaaccaa       240
     aaactgaaaa gtggggtggg aaatcaagkt tagcttcgaa catggctctc agcagagctt       300
     gggcagaggt ccgggcagag caaatggtgc ctctatatat ttcttactct atg              353
//
ID   P-N1_DSuz   repbase;    DNA;    INV; 892 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-892
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 112-112 (2022).
XX
DR   [1] (Consensus)
XX
CC   94% identical to consensus. 8-bp TSDs. Some were embbed in other
CC   repeats.
XX
SQ   Sequence 892 BP; 316 A; 164 C; 163 G; 247 T; 2 other;
     catgatacaa ttacccgagg tagtctcgac ggctcacgaa gcggtcgtgt tcggcttcag        60
     tgcatgttcg ttgcttgacg cgagagcacg tctgcggacc attttcttgg caattttaac       120
     ccttatgmaa aaatgacttt tkgcaatgtg tgtcgtaaac acgtggatgg tgttaaattt       180
     ctaaaagcac caaaatgttt agaaaaaaga gcgttgtggg aagaatcgct tgggtgcaag       240
     ttgggagatt actctaaaat ttgcgaaccg cactttaggg ataaacaatg gttgttggca       300
     acaaaaaatg gtccgaattt aaaaaaaagg cgactgaacg aagatgcggt tcctgattta       360
     aatattccca aacaaggcta cgccgactca atcacgcaaa cagagtaagt tgaacgtatt       420
     aaaataagca aacacatata gacatataga cgtctgtcca gtttatagaa aaactaaaaa       480
     aattggagca actattttta gtctttgtta atgatgattt tcaaaaaacc aaaaatgtta       540
     agcaaatatt attaagatca gcggaaaatg taaatattaa tttagatata aaaaaatttt       600
     attttaagat tagaatatat tttagaatta agaacctcaa caaacggctt gcaagccaaa       660
     aacaaaaaca acgcctgttg tcaaattcta aattattaaa aattaagcta taaaaaaaac       720
     cttcaactct ttttattaca acacgcaact taaagcccca cgcaccatct aagggttaat       780
     ccacacactc aattgtcgat tcgctcgcac ttactgggcg agtccctctt actcgcactc       840
     attgtagaga cgagattttg ccgacgggac taccttcagt aattgtatca tg               892
//
ID   P-N2_DEl    repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   02-JUL-2021 (Rel. 26.08, Created)
DT   02-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-N2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1642
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4020-4020 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
SQ   Sequence 1642 BP; 536 A; 258 C; 295 G; 552 T; 1 other;
     catagagtaa taatgtatag agtcgccatt tgctctgccg ctctctcgag tgacttttcc        60
     agtgatgcca cctagactaa aaaaggggaa aatttcagtc tctcacggtt cgattcgaac       120
     ctttaattcg gtcccatggt gaatttttgc agctggcctg ttcgctctta ttgttctgtt       180
     ttcagcttat gggaaatgcg gcagagcgag tgaaatgacc aaatgatttt ttgttttgtt       240
     gacaaaaacg ttgttcttgt tttcccatag aaagcggctg ggaccgaatt caacatccac       300
     atgggactga attcaatgtc cacataggca ttgagtaaga aagcaaagtc ttttactttt       360
     tgactcaatg tgcacatggg actgaattca atgtccacat aggacccact catgtctgag       420
     ttaaattcaa attgtactga atttaaataa tttgtaatat aaggataagt taattttaaa       480
     tattttgtta gcaaaacgta ttgtgttttg ataataagaa ttatgttaat tataactatt       540
     aatagactag atgaatatat aatataatta ttcttttgca tttgcacttt caatgtttct       600
     aataaaacca aatacaaaaa aaaatccgtt ttataattta ttatggtgga attaagtttg       660
     ttgcaaagat atattgttat agcaatagtg attaatattt aattttttaa aattacaatt       720
     tttttttact taatattttt agtgcaaatt gtattataca aaatattatg tattatacaa       780
     aataaatatt ttttaaatac ttttaagcaa tttagttttg cctgtcttaa aaatcgaaat       840
     tctggtttca ttttcaaaat cgaactcaaa aaagcaaatg aaaccaataa cataattact       900
     ctatgccaat aaaatatctc aaatcagcat tacagctcaa agccatacga aacacgasct       960
     tttaagagcc tgttgtatga ataacagaga atattttatc gatactgagt aggaatcgga      1020
     aatatttttg agttcacaca gttaaaaata ggtgtgaggg atgattgtat tggtggacgt      1080
     cgagcattga gaagatgctt caggttcgac atgacgtcac gtcaaacagc aaaagcaatt      1140
     ggactttgct gggaatctgc ttggatgttc gaagtgtggt gaaatgataa aaagtaaata      1200
     aactggtatt ttgcagcgaa atcaataaaa gaatggagac atcgaattac catcggctta      1260
     gagacaatac ctctggacgt tttgtttaaa aacctgaaat ttttgtgttt taggtcataa      1320
     aaaatcgctt ttttggactt ttattgacat atcaacggtg tttagtcgta tgtagttctt      1380
     gtaaaggcaa aaaaagcaaa agagaagtca ttgtttttac aaaatagcgc aaaaactctt      1440
     tcaatgtttt gaatttagcg cttactagct gaactcttct ttcgcatgca ggtcttacgg      1500
     cagttgcatc ctgttgctgg tcgcttgcac atgttcgaac agctgatatc ttcaccacac      1560
     tgttcaaaca ccggcgtcac gccagcgtcg agaaatttgc gggcagagca aatggcgact      1620
     ctatatagtt tcctactcta tg                                               1642
//
ID   P-N2_DSuz   repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   13-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; P-N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-165
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 102-102 (2022).
XX
DR   [1] (Consensus)
XX
CC   94% identical to consensus. 8-bp TSDs. Some are embeded in more
CC   recent duplications.
XX
SQ   Sequence 165 BP; 36 A; 38 C; 37 G; 54 T; 0 other;
     catggtagaa ttatacaagg tagtcccgtc ggctgcctaa tcgttcggct ttcagttcgt        60
     taacgtgctt cagcgatatt gctatccttt tcacctgcac gtattgcgag tatcgttaac       120
     ggactaaatt ttgccgacgg gactaccttg tatagttgta ccatg                       165
//
ID   P-N2_DTa    repbase;    DNA;    INV; 1067 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   03-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-N2_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1067
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6199-6199 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 7-bp TSDs.
XX
SQ   Sequence 1067 BP; 375 A; 172 C; 190 G; 329 T; 1 other;
     caaagagaat ataaacacta agaggtgtaa cgcccataca actgaatgta cggcaaaatt        60
     tttggtgtgg attcagaaag tggatttatc atttcttagt gtgcgttgtc cgtgttagat       120
     tctttggttg tgttagtgtg caatttcgtt tgctctactg cgaaataggc tcaatcgtcg       180
     catctgtctg acgtctcgaa acaaggcact gtgggctagg ggtgtagtcg ctcgactgcg       240
     gatcgtgtcg gaccgagttc aactccgact gaacgcaacc tttctttttt taagtatttt       300
     tttttttaaa cattgttcat tgaatatatt ttttttaaat tgaaagaaag gtaaagacca       360
     ttaatggatt gaatgatttc ggtgtaaatc atttctttct agggattgtg tgcttgcttt       420
     tttgtttaaa aaataaaatt attgttattt ttagtccctg aattgcattt aaattgtata       480
     cttcaataaa aattaaaaat taaataaaat tataaaagta aactcggatg cgtatttcat       540
     aaacttttaa ttcaaaagta atgaatttaa aagatttgct caaaatgctt ctgcttttag       600
     aacttacaaa attaaaaaca aacaaaaaac acaaaaaaaa attaaaaaac aaaccaaaaa       660
     attaaaaaca aaaaaaaaaa aacaaagtaa aataaaaaaa aatgaagata aaaataaaac       720
     cacttcgcct cagagtggac tcgaacctca atcgcattat tcgcgggcca ccaactaacg       780
     caatgcgcca cagccctttt tgaaatgttg tgcgcaatgt gccttttagg acgattcctt       840
     ttcggsaaca taattcaaga atcaacaaat gagacaaaaa ttgaatttcg acttttctgc       900
     agcgcggagt tttgagagcg agagagcaag tgagcgagag agagaagtca agaaacggca       960
     ttctaaaaat agactgaata cgtgtgagtc gcatttgaca aaaatgacgc tgcctccgta      1020
     cattttcttg ctcctcgtta cacatcttag tgtttataat atctttg                    1067
//
ID   P-N3_DSuz   repbase;    DNA;    INV; 314 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   21-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous;
KW   P-N3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-314
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 113-113 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. 41-bp TIRs.  7-bp TSDs.
XX
SQ   Sequence 314 BP; 73 A; 73 C; 61 G; 107 T; 0 other;
     catagagtaa tgaactatat agaggcgcca attgctctgc cgctctcttt agataatgag        60
     gctatgatgc cacctaggcg aaaaatgctt atttcccctc tttttgacaa gttcgatcga       120
     acttgtaatt ccttcccacc tcattctgca ccgctcttgc tcactgtttt gtttttgttt       180
     ttaatcgaaa tccctattgc tgttgcttcg cacctaagtt agcttcaaac ttggccttga       240
     attggctctt agcagaggtt gggcagaggt tcgggcagag caattgaaac ctctatatag       300
     attcttactc tatg                                                         314
//
ID   P-N4_DTa    repbase;    DNA;    INV; 356 BP.
XX
AC   .
XX
DT   03-AUG-2021 (Rel. 26.11, Created)
DT   13-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   P; DNA transposon; Transposable Element; P-N4_DTa; autonomous.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-356
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6200-6200 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 7-bp TSDs.
XX
SQ   Sequence 356 BP; 82 A; 77 C; 80 G; 115 T; 2 other;
     catagagtaa kaaatgtata gaggcgccat ttgctctgcc gctctcttcg gcgaattcgc        60
     caatgatgcc acctaggcga aaaacgaaaa tttccctaat ttttmatatg ttcgattcaa       120
     acatgcattt cgggcccatg gtgagtttta tgggatttta tatatctgca ccgctctcac       180
     tcactgtttt gtttttgtat gtggactctc accactattg ctgttgcttc gcacatgttg       240
     gatgcggtga gaaatcaatg ttcgcttcga acttggcctt gaattggctc tcagcagagc       300
     ttgggcagag gttcgggcag agcaaatggc gtctctatac agtttattac tctatg           356
//
ID   P1_AG       repbase;    DNA;    INV; 4946 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   P1_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; P superfamily; P1_AG.
XX
NM   P1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4946
RA   Kapitonov V.V. and Jurka J.;
RT   "P1_AG: a family of P-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 2(11), 21-20 (2002).
XX
DR   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P1_AG.
CC   P1_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 11bp long.
CC   The P1_AG consensus sequence was reconstructed from
CC   several copies that are only ~1% divergent from each other.
CC   Presumably, P1_AG copies have multiplied in the genome
CC   during last 1 million years.
CC   The P1_AG encodes a 895-aa P-like DNA transposase called P1_AGp.
CC   Putative exon/intron structure (based on FGENESH).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(302..562,623..733,796..2262,2433..3278)
FT                 /product="P1_AGp"
FT                 /note="DNA transposase"
FT                 /translation="MSSNYKCCVAFCKNNRYNVKKVGVNVCFHKFPEGKET
FT                 KQKWIAFCQREISWIPSSSNVVCSQHFLPSDYQLSSSHNTKRGANWLNPEA
FT                 VPSILLPQDTGLNLSQFNEHQQNNNNDESSRAELQGATSSHLLPDENDLIL
FT                 IGKENVCKKCKGLQQKIFNLEAKLNELEERNKQLVTINNKLSDTLKEVNEK
FT                 EKEHLKKLEELDKATKKIKEEWPRANFVQNMKDSLKGSLSSNQIDLILGIK
FT                 KTVRWTKEELSLAFTLRYFSQRAYRYIGDDMKIPVPVPRTLQRYSSKIDLK
FT                 QGILEDILKFIGSYSQTLKPMDRECVLSFDEMKVSRVLEYDPSADEIVGPF
FT                 NYLQVVMMRGLFKQWKQPIFIGFDTKMTKDIIIEIISRLSEKDINVVAIIS
FT                 DNCQTNIGCWKELGARDDVEKPYFPHPKTNKNVYVIPDTPHLLKLLRNWLL
FT                 DHGFEYNGQLIETTNLLRMVAKRMESEMTPLFKLTTSHIDMTPQERQNVRR
FT                 AAELLSRTTAVALRTYFPDDDNAKILANFIEKVDVWFSISNSYTPFAKLDF
FT                 KKAYTASDDQVRALTDMYDIISNMTIPGKNGLQIFQRSIMMQIKSLQMVFA
FT                 DMKLKHDAKFICTHKLNQDVLENFFSQLRQIGGVYDHPSPLSCIYRIRLMI
FT                 LGKTPTILHNQTTTVEAANCEQDEFITTTESNVAGARSNDVFISASMFEKA
FT                 EITPELPDVKAMEEANNFVSQDVSSLSSVSDTSIELPHQEADGLSYILGYL
FT                 AKKHHSQFSHLNLGEHTFKTRIDHNYCQPPTFVHHLSCGGLIEPSDEFLNL
FT                 GKKMEKIFLKMNPDGGLLKGERIVDRITNKIKRHLTELPVEIIRSFAKQRV
FT                 IVRMRYLNLKATAEQLNKMKHKKRKFVTENTKAAKKMKKIIN"
XX
SQ   Sequence 4946 BP; 1701 A; 839 C; 944 G; 1462 T; 0 other;
     caaggttatt agactgtata caggttacga caaaaccccg ttttgacaca tcttcaataa        60
     aaaaatgaat taaaattttg acagacaaat tggaaagttt gtttacctac aaattgcaat       120
     ccttccgaac atacagcttt cgcaattgat gagtgcttaa atactaccgt ttttctgcgt       180
     ttcaattttc gtttttgtgc ttttttagtt tacggctagt taagtttatt taaggaatta       240
     ggtttatcta agctaagtaa ttcattaaat agctataaat tacgaaacaa agcagcgaaa       300
     tatgtcgtcc aactacaagt gttgtgtagc attttgtaaa aataatagat ataatgtaaa       360
     gaaagttggt gtcaatgtat gcttccataa attcccagaa gggaaagaaa ccaaacaaaa       420
     atggatagcc ttttgccaaa gggaaatatc gtggatacct tcctcaagta atgtggtgtg       480
     ttcgcaacat ttcttgccat ctgattacca attgagcagc tcgcacaata ccaagcgtgg       540
     ggctaattgg ctaaaccctg aaggtgagac gttatcaaac caaacgatgt tgtttcttta       600
     taccgatata aactctattt tagctgtccc atctatcctg ttaccacaag acactggttt       660
     gaatttgtcg cagtttaatg aacatcagca gaataataac aatgatgaat cttcccgggc       720
     ggaactgcaa ggtggtatgt taatgaattg gcgatgttta tttgatccat tctaaaattt       780
     atgaatatga tttcagccac ttcatctcat ctcttgccgg acgaaaatga tttaatattg       840
     attggaaaag agaacgtttg caagaaatgt aagggattac aacaaaaaat atttaattta       900
     gaagcaaaac ttaatgaatt agaagagcgc aacaagcaac tggtcactat aaataacaaa       960
     ttaagtgata cactgaagga agtaaacgaa aaagaaaagg aacatctgaa aaagctagaa      1020
     gaacttgata aagctacaaa aaaaattaaa gaagaatggc cacgcgctaa ttttgtgcag      1080
     aacatgaaag attcgcttaa gggttcgcta tcatcaaatc aaattgacct tattttagga      1140
     attaagaaga ctgttcgatg gactaaagaa gaactttcct tagcatttac tcttagatat      1200
     tttagtcaaa gggcataccg ttacataggc gatgatatga agataccagt accggtacca      1260
     agaactttac aacgatattc ttccaagatt gatctaaaac aaggcattct ggaagatata      1320
     ttgaaattca ttggatcata ttcacaaaca ttaaagccta tggatcgaga atgtgtttta      1380
     tcgttcgacg agatgaaggt gtctcgagta ttagaatacg atccatcggc agatgaaata      1440
     gtgggcccat ttaattatct gcaagtagtc atgatgcgag gattgtttaa acaatggaaa      1500
     cagccgatat ttatcggctt tgataccaaa atgacaaagg atatcattat cgaaataatt      1560
     tcacgattga gcgaaaaaga tataaatgta gtcgctatca tcagtgataa ttgccaaaca      1620
     aacattggat gctggaagga gctaggcgcg cgggatgacg tagaaaagcc gtattttcca      1680
     catccaaaaa ctaataagaa tgtgtatgtg atccctgata cacctcattt gctgaagttg      1740
     ttaaggaatt ggcttctaga tcatggtttt gagtacaacg gccaacttat cgaaaccacc      1800
     aatctgttgc gtatggtagc caaaagaatg gagtcagaaa tgactccttt atttaaactc      1860
     acaacatccc atatagacat gactccccaa gaacgacaaa atgttcgaag ggcagcagag      1920
     ttattgtctc gtacaaccgc tgtagctctc cgtacatatt ttccggacga tgataatgct      1980
     aaaattttgg ctaattttat agagaaggtg gatgtgtggt ttagcatatc taattcttac      2040
     acacctttcg caaaattgga ttttaaaaaa gcatatactg ctagcgatga ccaagttaga      2100
     gctttaacag atatgtatga cataatatca aacatgacta tcccaggtaa aaatggttta      2160
     caaatttttc aacgttctat aatgatgcag attaagtcac tgcaaatggt gtttgcagat      2220
     atgaagttaa aacacgatgc caaattcatc tgtacccata aggtaagcaa catgataatt      2280
     caattgcaat taattcattg aacattcaat accatatgac tatacaggaa aatctcagct      2340
     agagctggtg aattcattgt tacaaaatta atcattttaa ctaatacatt tattgttgtg      2400
     tttctttttc tttttttttt ttcattttac agttaaacca agacgtatta gagaattttt      2460
     tctctcagct taggcaaatt ggtggtgtat atgaccatcc ctcacctcta agttgcattt      2520
     atcgaattcg tcttatgatt ttggggaaaa caccaaccat tttgcacaat caaacaacta      2580
     ctgttgaggc tgcaaattgt gagcaagatg aattcattac aacaactgag agcaatgttg      2640
     ctggtgctag gagtaatgat gttttcatct cagcttctat gtttgaaaag gccgaaatca      2700
     ctcccgaatt accggatgtc aaggcaatgg aagaagcaaa caatttcgta tcacaagatg      2760
     taagttcact tagttccgtt agtgatacaa gcattgaact acctcaccaa gaagctgatg      2820
     gattgtctta catacttgga tatcttgcaa agaagcatca ctctcagttt tcccatctta      2880
     atctgggaga acacacattt aagactagga ttgaccataa ctattgccaa cctcctacat      2940
     ttgtacacca tttgtcctgt ggtggactga ttgaaccgtc ggatgaattt ttgaatttag      3000
     ggaaaaaaat ggaaaaaata ttcttgaaaa tgaatccaga cggaggatta ttaaaaggag      3060
     aacgaatcgt agatcgaatc acaaacaaga taaagcgaca tctaacagaa cttccggttg      3120
     agataattcg ttcttttgca aaacagcgtg taattgttcg tatgcgctat ttgaacttaa      3180
     aagcaacagc tgagcagcta aacaaaatga aacataagaa aagaaaattc gtgacagaaa      3240
     atacaaaagc tgccaaaaag atgaaaaaaa ttattaatta aagtttatgg taatgtaaga      3300
     ggtagcatat agcactcatt aataacgatt aagcatatat ataatacata ggactttatt      3360
     ataggaataa aaatgacaat gtgataaaaa tttcatactc ctctaaattt aagttttcat      3420
     tgtattgtag tattaagaag agattattaa atggattgtt aaatagaaaa taaaaaagta      3480
     caatttgtgc aaaatataga gtaatttgac agtagagatt cgttgtacaa tgtaatcact      3540
     cggaccacat catttttagt ttttatcttc cgtcaataac accaaccttg atatagaatg      3600
     ttaatacgat gaaccaacaa aaacacccta actagccatt gctgtgtgac agtactttcc      3660
     aaactacagg ccgcatgcag tcccgagtgc ctataatgtg ccccacgatg atttggcaat      3720
     ttttcatcca acagattgat cattgttcat atagcagagc ggcctaccaa acagaaagat      3780
     caaaagaaaa atgttgaaag ttctactaaa tatatgaacg gttaagagcc gcaatctcaa      3840
     aaataaagag ctgcatgcga gccgcacttt gccgttcgct ggtctacaag ttacaaagca      3900
     tttatagtac atcgttgctt tcgaaaacat aatggtgtaa tttatcatta tctgtatcat      3960
     gaaaatagaa tgcaactata atcaaattaa aggaaacgtt attgatgtgt tctattccta      4020
     cacgacacct tttcaacgat agtcgctacc gaaattttgt ataaagcgta accacatgtt      4080
     ttttttatat gaagtttccc tgaagaaacg tcgttcgacc ggtgcatcct agagattaat      4140
     catgggttag gtgttgttga attcaagctt agggtgttga agcaaagaat taatctgtat      4200
     gaaggaaggt gaaggatgta gcttgtggag cagtacggtc aatgggatat tctcgaggtg      4260
     taggcttgca gtataaattg gctggggatt gtttttaaaa agaactgctg tcccaccgag      4320
     caggtgcttg taagatgact ctgatttatc gttgtctggc tgatgtaggt tgtccggcat      4380
     tggtcacata acacagtgag ctcgatggtt catggatcaa ctagtcaatc tgtcggatga      4440
     tggatgcaga cgagaggtag gaggcagtca tgaaccgacg ttaggtgcta atggagcagg      4500
     acgtgctcag cagtgattgg agataaaaca aagagagggt gaaattataa aactttgcca      4560
     cagtatgagt agtattgatg gtttgaaagc aacatacaac ttgcattatg ccttaattct      4620
     cctatacacc tgattgtgct ctgcgatgtt cgatgtcgat ggaccttgca gaataggtca      4680
     acaatttggg gatgtttttc acctggaatc agctcactca ctagaattac ctggagtctt      4740
     tcagctgcag aaaaaaaatc gagaaattta ttatgcttac tacatttgtt tcgtatttta      4800
     aattctaatc ttcgtcattc gtgaacagca taagctgatc aaaacaaagc cggcgtgatt      4860
     tgacagacaa attgtaaaca atataaccaa catggttcca gcaaaaacga agtgtcttaa      4920
     cctcagtaga atatataata accttg                                           4946
//
ID   P1_AP       repbase;    DNA;    INV; 1498 BP.
XX
AC   .
XX
DT   21-FEB-2009 (Rel. 14.02, Created)
DT   21-FEB-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; P1_AP.
XX
NM   P1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1498
RA   Jurka J.;
RT   "P-like DNA transposons from pea aphid.";
RL   Repbase Reports 9(2), 467-467 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(249..425,395..1168)
FT                 /product="P1_AP_1p"
FT                 /translation="MIMYIVYNIILITKQNNKYKKYYKFKFENSWLIGISF
FT                 FIRILSGEFSSNITLNLYTQEEHNFKFIYTRRISQDCLENFFGSVRKQSGD
FT                 CITPTPIQFTRAFKKLFTCCFLVHSGAENCADDFSIILAQLKDVNNVSVNN
FT                 VLDNNTRPSNTDISISQNDLDFRGGSLSLVSKNIIKYKCGFLIKKCLTKHT
FT                 CEVCENYSMAHQALDENNLYCYFKAYQTDKSLFGSLRMPNDDFFIFICKLE
FT                 ILFQXNFSDFALKDKILNSFIELFKTEHLNHPCENFPIIYLLKLFTRMSIY
FT                 YAIKTINQNLKNPTNKRKLIIWKH*"
XX
SQ   Sequence 1498 BP; 588 A; 165 C; 207 G; 537 T; 1 other;
     gtatagaaga taacaagtag ggaaagcaag ctttatcaca gaatacaact attttatcag        60
     caatcggagc tggcagacca cagttttgat aatttcaaaa taaataattg gcgggtaaac       120
     taaaaaatgt aatattatta tacaccgtag gtatagaaga tctgaagatg atttatcacc       180
     tagtaacatc gaaattaaaa attctattta taaataatgt acctaatgtt atgagggaat       240
     gatgataaat gataatgtat attgtataca atataatatt aataacaaaa caaaataata       300
     agtataaaaa atattataaa tttaaatttg aaaattcgtg gttaatcggt attagttttt       360
     ttataaggat cctgagcggt gagttttcaa gtaacataac tttaaattta tatacacaag       420
     aagaataagt caagattgtt tagaaaattt ttttggatcg gtgagaaaac aatctggaga       480
     ctgcataaca cctacaccaa ttcaatttac tagagccttt aaaaagttat ttacctgttg       540
     ttttcttgtt catagtggtg cagaaaactg tgctgatgat ttttctatta ttttagccca       600
     attaaaagat gtaaataatg ttagtgtgaa taatgttttg gacaacaata ctagaccatc       660
     taacactgat atttcaattt cacagaatga tttagatttt aggggaggtt cattatcttt       720
     agtcagtaaa aatataataa aatataaatg tggtttttta ataaagaagt gtctgactaa       780
     acatacctgt gaagtgtgtg aaaattatag tatggcccat caagcgttgg atgaaaataa       840
     cttatactgc tactttaagg catatcaaac tgacaaatct ctatttggta gtttgaggat       900
     gccaaatgat gattttttta tatttatttg taaacttgaa attttatttc aagamaattt       960
     ttctgacttt gccttaaaag acaaaatatt aaactctttt atagaacttt ttaaaactga      1020
     acatttaaat catccatgtg aaaactttcc tatcatctat ttattaaaac tttttacaag      1080
     aatgtcaatt tattatgcaa ttaaaactat taatcaaaat ttaaaaaatc ctactaataa      1140
     aagaaaacta ataatatgga aacattaaaa tattatttgt gtacataaac tatataagta      1200
     tataactatt ttgtttttaa agagatttga ataaatatat taattgtaaa aatattgaat      1260
     tgtttttagt tacttcattt actgtcatac ctatattata agttttgtta ttaatttaat      1320
     attaattatt aacacaattt gaagttataa atttcatata aattatgaaa taaatcatat      1380
     aatcatagct aaaagtggta attgatgcag tgataagcag aaatgataag ataaaaaagt      1440
     aaggatccag tgaacaatgg aatttgtagt agctttccct acttgttatc ttctatac        1498
//
ID   P2_AG       repbase;    DNA;    INV; 4196 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   P2_AG is a P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; P superfamily; P2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4196
RA   Kapitonov V.V. and Jurka J.;
RT   "P2_AG: a family of P-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 2(11), 22-21 (2002).
XX
DR   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P2_AG.
CC   P2_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 27bp long.
CC   The P2_AG consensus sequence was reconstructed from
CC   several copies that are only ~2% divergent from each other.
CC   Presumably, P2_AG copies have multiplied in the genome
CC   during the last 1 million years.
CC   P2_AG encodes the P-like transposase that is slightly
CC   damaged by mutations accumulated in genomic copies of P2_AG.
XX
SQ   Sequence 4196 BP; 1543 A; 707 C; 706 G; 1240 T; 0 other;
     caaagtgtat gaatatcagg tggtctcgtc ccatacaaat tgacaactaa aaacgaaatc        60
     gaaaaaaaat tggttttgac aggacgggtg aaaacatatc catggaaact ttacggattg       120
     ttagggataa aattcaaagt aggctctggt catatcgcca atgctattat tttgtgaact       180
     tgtgaatgta aattttgtga accaagccga taaaaaatct tatcaattgc aataattatt       240
     tactttgttt gtgtgattta tcatcattgt cactggtgtt ttttctttgt atttcactgc       300
     cgttaataaa tgaaattgaa ttgaaagcgc gttaaatacg taagtttgaa gcttgccaaa       360
     tacattcaaa gccatacgca aaataaaatt atatttattt tgttcatgga cctagattga       420
     agatgccgaa taattcatgt gcagtttcat tttgtaaaaa cagcacatat cgtgctaaaa       480
     cacaaaacct gaacatctcg tttcataggt ttccaaagca tgaagatttg cgtaatcaat       540
     ggacattatt ttgccagaga gaagaagttt ggaagccaaa ggataatgat gtaatttgtt       600
     catgccattt taccatcgaa aattatcaaa tggccaaatc acctattttg aaaaacagac       660
     aaccattgag aatcttgact ccaaatggta aaatcgatta gcccaactac ttttaccttt       720
     tttttttttg ttaattttgt aacttactgc taaattaatg taaattacag caattccatc       780
     cttagtttgt agaaatcctc atactattcc tgaacaggag caaatagaca gagtagatga       840
     acatcaacga atcaacgagc tgtatgaaag aaacgatagc aaaagtgctt cagattttgt       900
     cgatcatgaa gcaagtgttt taattagtga tcaagaaaaa attcagaatc ttgaagctgt       960
     gatagcaaca ctgaccgaag agattgattt ctgtagaaaa ctaagaaagg acaattcatt      1020
     cttattaaaa cagaaaaaaa tactattaca acagaacaaa aaactgaaac ttagaaatac      1080
     cgttttgaaa aataggataa gagtgcttga acaaactact atccaacatc atgaaatagt      1140
     accgttgatg aaaaaaaaaa attgagtaag acactttctg gaaatcaaat cgatttgatc      1200
     ctgaaacgca aaaagcgagt aaggtggaca aaaaaggagt taggagctgc tttaacgtta      1260
     cggtattttg ggaaaaggcc ttacatgtat atgacagacg acatgcattt cccccttccg      1320
     gcaagagcaa ccattcaacg gtatataaaa tcaattaata tcaagcaagg aattcttgaa      1380
     gatgttttga atttgatgga atcttacgcg aaaacattaa ttccaagaga tcgtgaatgc      1440
     gttattagtt tcgatgaaat gaaggtgaca catatattag aatacgatgt tggtgccgat      1500
     gaagtattag gtcctcataa ctatcttcag gttgtcatgg cccgaggtat ttttaacaaa      1560
     tggaagcaac ctatttttat tggttttgac caaaagatga cgaaagacat cattttatcc      1620
     ttaattaaaa aattaagtga acgcatgata aacgtggttg caattgtcag cgacaattgt      1680
     caaacaaata tttcatgttg gagagatttg ggagctcacg atataaccaa accatacttc      1740
     aatcatccga ttaccaacaa aaatgtttat gtatttcccg acgcaccaca tttgattaaa      1800
     ttactacgaa attggctaat tgatacagga tttgattata aaggaagcat aataacggca      1860
     gacccattac gaaaactagt tgaagaacgc aaggatgctg aaattacacc gttatttaaa      1920
     ttaaatgaaa atcatttaac aatgtcacca caagaacggc aaaacgtgcg acgagcggtc      1980
     caattacttt cgcatactac agccactgct ttgaggcgat atcaaagtga tgatgcttct      2040
     cagactttgg cagaatttat tgaaacagta gactgctggt ttagcatatc aaactcttat      2100
     tctccttggg ctaaaatagc gtacaaaaga tcgtacgcgg gaaaagaaga acaagaaaag      2160
     tcgttagata aaatgtacga acttatatct aacatgactg ccttaaacag aacaagcatg      2220
     cagacctttc agaaatcgat tctgatgcac attacttctc ttaaaatgct gtataaagat      2280
     atgcaaaaaa aaacatcaag tagattttat ttcaacgcat aaggtaattt tgaactaaat      2340
     atccattatg atttgtaaaa ctgatttttt aaaccttttt ttatttgaca gttgaatcaa      2400
     gatatattag aaaacttttt ttcccaattg cgacaaaaag gtggggtgta cgatcaccca      2460
     tcaccattga gttgtctgca tagaattaga atgatagtta tcggaaaatc tccaacgata      2520
     cttattaatc aaaccaatct ggagacaaac cgaaacacga gattagggga aaatatctgc      2580
     ttaatggagc agcatgaaaa cgcaaacgaa gattgtttgt ctgaacaaaa tcaagatttt      2640
     atgtctgtaa ctctatttac tgaagcagac gtaattccag atttaccaga caatgcatta      2700
     aatgcacatg aaatggatga tgaaagtgaa atccttagta ccatcagttc caccattcca      2760
     gatctaccag aacaagatag agatggattt taatatatta tggggtactt aggaaaaaaa      2820
     tttcacaaaa aacacccgca cattgatcaa ggaacatatt catttaaaat aaccagcgat      2880
     cataactaca gcaaaccacc atcatttgtg aagcacttat ccacgggagg attgtttgtt      2940
     ccatctcatt cttttttgaa attgggatcc aaaatggaaa aaatcttcca aaagctgcat      3000
     cccgatggta ctctggacaa aaagccaggg atagtaaaaa caggtgtgaa tacaattaaa      3060
     aaaaaaatac cgagtttacc cgtagacatg attaaatgct ttatgatgct acgtgtgaaa      3120
     ttaagaatta aacacacgaa tcttaaagcc gcaaatgaaa agctattgag atgtaagcga      3180
     aaggggccaa aagagcataa agcagctaaa aaaatgaaaa aaatagtcaa ttaaagaata      3240
     attttgaaat ttaatatgta ttgttgtttt actttgataa aattatactg atgtacaacg      3300
     acaacacaac gacttgggag acgatggcgc gatatcgtaa atacttttag acacttccgc      3360
     aatagcccaa acaatcatag cggttatgat tgtagcggtt aataagtaat gactgacatc      3420
     aacgttatat aacgcaatat tatttaattt aaaaacttag aactttttta caaacacaat      3480
     taattcgtag ttaaactatg aatcatgaaa acaattgaaa actgaaactg atgaaaacta      3540
     agtaatgatt tttttctggt tcaaaatttc tcaaaaaacc tttccgctaa aaacttcaga      3600
     aaggtctact gtcccgtgac cgctaagaat ttccacacaa tttgtcttta cttctttatg      3660
     tgtctccgtc aaaaataaaa tattcgatgt tccatggcgt aaagatgagt tatatatata      3720
     tatttttgtg ttgataaatg gtccaaaata ttcgcttgtc ttcacagctc gataatggat      3780
     attcgttagc ttttcgcttc tcagagaaaa cggccaacga ccaacgtatc tacctataca      3840
     aagggaaaaa tagaaaataa cagcaagtat gagaaacaca taacaacggt tatgtgaaga      3900
     caataatgat tgcactccct taataatcac cacaaacaca ctgttttcat taatatcggt      3960
     actcttcttt tcctaattta ctttttcaat tctaaatcat cttactttca acaaaataaa      4020
     atgagatttc caacagtttt gttccaatcg ctagacaccg taatattgtt ttgcttttca      4080
     tcaatacgtg atgtgtgtgt gtgtgagata tgttttcacc cgtcctgtca aactttgacg      4140
     ttcaactttt gctataaaaa acaggctatg agaccacctg atattcatac actttg          4196
//
ID   P3_AG       repbase;    DNA;    INV; 4394 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   P3_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; P superfamily; P3_AG.
XX
NM   P3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4394
RA   Kapitonov V.V. and Jurka J.;
RT   "P3_AG, a young family of P-like DNA transposons from African
RT   malaria mosquito.";
RL   Repbase Reports 2(11), 23-22 (2002).
XX
DR   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of the youngest families is P3_AG.
CC   Some P3_AG copies are identical to each other. It's possible,
CC   that P3_AG is an active DNA transposon.
CC   P3_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 29 bp long.
CC   The P3_AG encodes a 879-aa P-like DNA transposase, called P3_AGp.
CC   Predicted exon/intron structure is based on FGENESH and GENSCAN.
CC   The P3_AGp transposase is 43% identical to the P1_AGp transposase
CC   encoded by P1_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(356..613,678..2198,2260..3117)
FT                 /product="P3_AGp"
FT                 /note="DNA transposase"
FT                 /translation="MPRSCAAAFCKNNAENVKKRGLNITFHSFPSDDSLPK
FT                 WIDFCKRDEHWKPTKISTVCSLHFKPDDYQMAKSSLPQTLPVLKRLKPYAI
FT                 PSLIQPADFIQNEPSNMTAPLKECNQPNVEFQTDSEYFSDVENVPSQTIID
FT                 MKRELDQVKEDNRKLIEVNTNLRDKLHSYFNENKRLKAEIDNLQKHISKKD
FT                 AGIDEAALVTAMKERLKPTLSENQIDIILKKKKRVVWTKEEIGSALTLKYF
FT                 GLRCYKYLAKDRKFPLPADATLKRYTKNLVVKEGILDDVLKLISNLTSTFT
FT                 EKDRLCALSFDEMKVNRIIELDKASDEIIGPHNYLQVVMARGLCNKWKQPV
FT                 YIGFDKKMTKEILLKIIEKLSEININVVAIISDNCSTNVSCWKELGAKDYE
FT                 RPYFQHPTTLNNVYVIPDAPHLLKLLRNWFLDSGFTYNGKHIKADLLFDMI
FT                 ASRNETEITPLYKLSKTHLVMTPQERQNVRRAAQLLSHTTAISLRRYFKNN
FT                 AEATDLANFIEKVDLWFSISNSYSPFAKLDYKKSYTASDDQIKALDEMFEI
FT                 VSNMTVIGKHSLQIFQKSLLMQITSLKLLYDDLHKRHNISFISTHKLNQDV
FT                 LENFFSQLRQIGGVYDHPSPMSCIHRIKMIILGKAPTFLKNQTDLEPSTFS
FT                 CTDEYISSQIRTSIEIENEGSEQANDGDIISASIITSALNQPPVKQSIQSD
FT                 TLSSRSSEMLSSVSSSAIELPEQDSDGLEYIMGYIGRQCFEKFPHLNLGNL
FT                 SLNLNSDHSYSHPPSFVKHLSVAGLFVPSEAFLKQGYKMEKIFQKLHPNGN
FT                 FNKKRYISKRLVKRLQKEFPELPLIVVQQFAKHRINIRIKFLNMKIANEKR
FT                 VNNKRKAPSHSKTAKKCEKLQISCFV"
XX
SQ   Sequence 4394 BP; 1513 A; 768 C; 847 G; 1266 T; 0 other;
     caaagtgaat gaaagggagg tgagcttatg tagaacattt ggcttgcggg attttagaaa        60
     aatgaaataa agtttgacag tttgtaaccg ggtcggctgg acggtttgtt tacatttgat       120
     agctattgga ctggtccatg ttgttgatgc aacggcgaga agtgtgtgac taaaattcgt       180
     gtaaaagaaa atagtacgct ttcgggtgtt aatattttat tataccaggt aaaatataaa       240
     ttgtacaagt tgcagggaat gtattaaatg gatttatttt ctatttttag agaaaaagca       300
     aatctggaag cagcgttgtt tgtagctgtg tccacagaag tttgtaggaa gcaacatgcc       360
     tcgctcatgt gcagctgcat tctgcaaaaa taatgcagaa aatgtaaaga agcggggttt       420
     gaacattact ttccactcgt ttccatcaga cgattctttg cctaagtgga ttgatttctg       480
     taagcgggat gaacattgga aaccaaccaa aatatctact gtgtgctctc tccatttcaa       540
     acccgacgac tatcaaatgg caaaatcatc tttaccacaa accttgccag tactgaagag       600
     attgaaacca tatggtaagg aaagatatga gctttatgca gtaattatca tttcatcaca       660
     ttctcatctc tttattagct attccatcat tgatacaacc agccgatttt attcaaaacg       720
     agccatcgaa tatgacagcc ccattgaaag agtgtaacca gccaaatgta gaatttcaaa       780
     cagattcaga atatttcagc gatgtagaga acgtgcccag ccaaacaatt atagacatga       840
     aaagggaact tgatcaagtg aaagaagata atcgaaaact gatcgaagtg aatacaaatt       900
     taagagataa actgcattca tacttcaatg aaaataagcg actaaaggca gaaattgata       960
     acttacagaa acatatttca aaaaaggatg caggtataga tgaagctgca cttgtcacag      1020
     caatgaaaga aagattgaag ccaacattat ctgaaaacca gatagatatt attttgaaaa      1080
     agaaaaaacg tgtagtttgg acgaaagagg aaattggctc cgctttgaca ctcaaatatt      1140
     ttggattgcg atgctacaaa tatttggcta aagatagaaa gtttccttta cctgcagacg      1200
     caactttaaa acgatacaca aagaacctcg ttgtaaagga aggaattttg gatgacgttc      1260
     ttaaattaat aagcaattta accagcactt ttactgaaaa agatcgcctt tgtgctctgt      1320
     ctttcgatga aatgaaagtt aacagaataa ttgaactgga caaagcatcg gatgagataa      1380
     ttggaccaca taactatctg caggtcgtga tggctcgagg actgtgtaac aaatggaaac      1440
     aacctgtgta cataggattt gataagaaaa tgacaaaaga aatactcttg aagataattg      1500
     aaaaactaag tgaaataaat attaacgttg tagctatcat cagtgacaac tgctctacaa      1560
     atgtaagttg ctggaaagaa ctgggagcta aagactacga aaggccatat ttccaacatc      1620
     ccacaacttt aaataacgtg tacgtaatcc ctgatgcacc tcatttatta aagctactaa      1680
     ggaattggtt tttggatagt ggatttacgt acaacggaaa acatataaag gcagacctac      1740
     tttttgacat gatagccagt agaaatgaaa cagagattac acctttatat aagttgagta      1800
     aaactcattt agttatgacg ccacaagagc gtcagaatgt tcgacgtgcc gcacagctgc      1860
     tctcacatac tactgctatt tccttgcgtc gttattttaa aaataatgct gaagctacgg      1920
     acttggcgaa tttcattgaa aaagttgact tatggttcag catatcgaac tcctatagtc      1980
     ctttcgccaa attagactat aaaaaatctt atacagcaag cgacgatcag ataaaagcat      2040
     tagatgaaat gttcgaaata gtttcaaata tgaccgtgat tggtaagcat agcttgcaaa      2100
     tttttcaaaa gtcgttgctg atgcagataa cgtctcttaa attgctttat gatgatcttc      2160
     ataaaagaca caacatttcc ttcatatcca ctcacaaggt aattaatgac ataaaaaaca      2220
     tcatatattc atattgatct atcatccttt ttaatttagc tcaatcaaga tgtactggag      2280
     aattttttct cacagctaag gcagatagga ggggtatatg atcatccctc accaatgagc      2340
     tgcattcatc gtattaagat gattatatta ggaaaagcac ctacgttcct taaaaatcaa      2400
     acagacttgg agccatctac attttcttgt acagatgaat atatctcatc gcaaattcgg      2460
     acatcgattg agattgaaaa tgaaggttct gaacaggcta atgacggtga tataatttca      2520
     gcatcaatca ttacctcggc cttaaatcaa cccccagtta aacaaagcat acaatccgat      2580
     accctgagtt caagaagcag tgaaatgtta agctccgtca gtagttccgc tatcgagctt      2640
     cctgaacaag acagcgatgg actcgagtat attatgggtt atattgggcg tcaatgcttt      2700
     gaaaagtttc cgcatttaaa tttgggtaat cttagtctga atttgaatag cgaccattcg      2760
     tatagccatc caccttcatt tgtaaagcat ttgtcggttg ctggtttgtt tgttccttca      2820
     gaagcttttt tgaaacaagg atacaaaatg gagaaaatct tccaaaaatt gcacccaaat      2880
     ggaaatttta acaaaaaacg ttacatatca aaaagattag ttaagcgact tcaaaaagaa      2940
     ttccccgagt taccgctaat agttgtacaa caatttgcta aacatcgcat aaatatacgt      3000
     atcaaatttc ttaatatgaa aatagcgaat gaaaaaaggg ttaataacaa acgaaaagca      3060
     ccatcacatt ccaaaactgc gaaaaaatgc gaaaaattac aaattagttg cttcgtttaa      3120
     cggatttata aaacagacag aaatatgaat tacataaatt tacttataaa ttttgattat      3180
     gtataaatta taaatgtata tattagtgaa taagcatttt ttttaataat atcatgatgt      3240
     attataaacg gtgaaattaa ccaggttgat tctaatgata atattcattt agagactaac      3300
     tattccgact agaacatata aatgaaataa atgaagttgt tcgcaatgtt gtttgtttcc      3360
     ctagcaaaat accaatagca ggctccaggg cctgccaccg gcatgcggga aagttaactg      3420
     gcaggccctg ggacctgcca tcgggctgaa cgtgttaaac gattggcacg gcgaccaatt      3480
     cagaaaaaaa gatgttgagt atatttgtaa cagtcatgca tactgttgag catactattt      3540
     tgcttctgat gattcttttg agtagcgcta gcatgtacct atgcacttgt tttttcaaca      3600
     aataacgtat gtaatttcag ccgtcgtctg gtatcgtagc attctaagag tttggttagg      3660
     ctatcttatt cggttctaat gctccagtgt tagatttcgc taatatttac gttgcctaag      3720
     ctgtttagtt gtaaattgtt ggcctggaaa aataccaaaa atgagttata tagaaatgta      3780
     gcaaatgaag aacttcaagt atcatcaagc tcgtaagatt acagtcaagc ttctgtgctg      3840
     catatgagcc ggaatatttc atcgcctttg atgcgggact tcctttctgc agccgaggtg      3900
     gaatgtaccg tcaccgtgat gcgatgcaga cgggaccata tacgccgagg ccgatgcaga      3960
     aggtgatgcg cttaagggag ggagaatgac ttcctccctt gatgtgcggc tggtgtgaag      4020
     cctggccaat ggagtcgcca acgatgaaac ggcagcaggg gccaatctct ttagggttca      4080
     caaagcagca cgttcaactg taacgtaagc acgtaatccg aattccgtaa tgaattgttt      4140
     ccaatatctg aaaataatac aaatcagtaa ctattccatg aagataagga attacattga      4200
     tgagggactt acattagaat actgaaataa tgaaacaatc catacaatgc ctgttgaaga      4260
     aataaaactg attgtgcgac gatgttatgc acaggaagaa aaggtaaaca ataccggtta      4320
     tatagtgtca aatttgacaa tcgtcatggc gacctaaatc tttcgataag ctcacctccc      4380
     tttcattcac tttg                                                        4394
//
ID   P4_AG       repbase;    DNA;    INV; 7669 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   P4_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; HATN2_AG;
KW   P superfamily; P4_AG; composite transposon.
XX
NM   P4_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-7669
RA   Kapitonov V.V. and Jurka J.;
RT   "P4_AG: a family of P-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(2), 26-26 (2003).
XX
DR   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P4_AG.
CC   P4_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 27 bp long (4 mismatches).
CC   Subterminal inverted repeats are 28 bp long (4 mismatches), their
CC   positions are 64-91 and 7606-7580.
CC   The P4_AG consensus sequence was reconstructed from
CC   6 copies that are only ~2% divergent from each other.
CC   Presumably, P4_AG copies have multiplied in the genome
CC   during last 2 million years. P4_AG elements carry a copy of the
CC   hAT-like HATN2_AG transposon, that was inserted into an ancestral
CC   form of P4_AG.
CC   The P4_AG encodes a 877-aa P-like DNA transposase called P4_AGp.
CC   Putative exons are based on FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(312..569,2572..4146,4211..5008)
FT                 /product="P4_AGp"
FT                 /note="P-like DNA transposase"
FT                 /translation="MSTCAASFCQHSRYIVKKMGLDVIFHKFPTDPTLLRK
FT                 WVEFCQREEAWVPSISSILCSAHFNKTDYQLINSPSKANRKILKKLKPSAF
FT                 PSVIKSQAREPSNNVVQQCSTNNVVQQIETDEGRIDTSVEHHDDDLPSDNI
FT                 THAKCQNCVQNETEIELLNQTLKKTQDKCNNLLEVNTFLSKQLEIVSKELT
FT                 QSQKEIELLKTNHNKFKDVAISPNEFTTRMKNVLKDTLTSNQIDLITEERK
FT                 RVRWTKAELSKFFTLRYLGKRAYQYLRDDLNFPAASISTLQRYGRTLNLKQ
FT                 GILDDVINLLKNITVDLPECHRECVLSFDEMKVNRILEYDPASDEVLGPHN
FT                 YLQVVMARGLFKNWKQPVFIGFDQQMTKEILFELIKRLYAIKINVVAIVSD
FT                 NCQSNIGCWKDLGAHDYCHPFFSHPITKCNIYVFPDAPHLLKLIRNWLIDT
FT                 GFEYNNKLIKADKLFELVAYRNAAELTPVHKLTQNHLVMTPQERQNVRRAA
FT                 EVLSRTTAIALQRYFPDDCDAQELASFIEKVDMWFSVANSYSPCAKLHYKK
FT                 SFNANENQLAALSDMFELMSNITALGKKSMQVFQKSLLMHITSLKMLYEDM
FT                 RKKHSIVYISTYKLNQDVLENFFSQLRQIGGVHDHPSPLHCMYRIRMMILG
FT                 KSPTTLKNHTELKNDDVENSHEHHEEFLSATVFSVADIPQSVPDISVMEKT
FT                 NQICQAIEECSQESDLISTVSSTCNVQSAQESDGLQYVMGYIANKYNTKYP
FT                 ELDLGVQTFKLTTDHCYSQPPTFVQHLSAGGLFEPSPTFLLLGNRMEKIFL
FT                 KMHPDGTFSKTKKIVAKIAKNIQNQISELPVEIIRTFAKQRMIVRMRFLNL
FT                 KSSTENLMKSKRKHVNQHGKGAKK"
XX
SQ   Sequence 7669 BP; 2520 A; 1306 C; 1374 G; 2469 T; 0 other;
     caaggttagt tgaggataga ggttgaagca tccagtgtaa attgacaagc agctgtggga        60
     aaattttgac agttcggtaa gaggttgttt atgttctcag acctacggca tgtggatgtg       120
     gactcgtgta gaaacaaaca ttgtaaatct gtgtcgcgca atagagttgt gaaaaatcac       180
     taaatttgta caaagcatat cgtttatatt gatctaagta catcacacgg ctttctaaaa       240
     aggtaaattt ttgattatta tgtgttttac tgcaacaagc ctaatttatg tttgctattt       300
     cagtgtgcat catgtcaacc tgcgctgcat ccttttgcca acacagccgc tacatagtga       360
     aaaaaatggg tctggatgta atttttcata aatttccaac agacccaacg ctgttacgca       420
     aatgggtaga attttgtcaa cgagaggaag cttgggtgcc atcgataagc agcattttat       480
     gttcagcaca tttcaacaaa actgactacc agctaatcaa ttcgccttcg aaggctaata       540
     gaaaaatttt aaaaaagctt aagccgtctg gtaagttttc atgtaatgtc ccacactaat       600
     ctatactaat ataagcatac atttgataaa gttactaaat ttgaagggtt catacatgta       660
     gctgctgttt cttcgacgtt tcgcccaacg tcgatgtttt actccgaatc gagttcatgt       720
     tttccttcgt agaccataag gttactccga cttttaagta ttgaacgagt tattaggaac       780
     gcaatgataa gcaaccagaa agtaaataat caagttcatt attaaaacca ggactaatta       840
     tcgtgaacga ttcgcaaaga ctaatatgat ctgcatacat catctacatc agtggtctcc       900
     aacctgtggt ccgttgcgtt aacagacgtg gtccacgaaa gaattatttt tgaaaaagaa       960
     aagcttaata ctatggatta tagtacacaa tcattataaa attttcaaca agcatatcta      1020
     aaatgagatt taaacgtatt tttgatcaaa aacattaagt aaagttaaaa aaaagtatgc      1080
     actcattaga tgtgagccgc ggcaaatgta ttttcaagcc aagtggtccg cgatcctaaa      1140
     aaggttggag agcactgatc tacatcattg cacacatctt gctttctcaa acttcctcct      1200
     caaattgtgc cattaaccct taccgtttta aattttgttt gcttcgttgt tcccagttgc      1260
     ttcattagaa tgtgcgcaac atatattctt acaggtcatc caccacatcc gaagttttgt      1320
     tttactttat gtgattttag tactattttc agttccaaca tccgttcaac gcaggtttta      1380
     caggaaagag cttcttttga aaatcctgcg attgatttgt tcgtaaaatc ctaccgtgta      1440
     tgcttccgcc gtgaatcgct ccggtgcgat acttttcgat gttcatatag atctgcacat      1500
     acattcattt atttttggta atcgatggtt tgtccgccag ttcaccatcg aatgaattgt      1560
     cttatgcagt aatacaacat acatgacggt atcgttgctg ttcgattcca ttgtagcaga      1620
     aggcttagca gaaggtccat ttgaaacgtt gttttcgttt ttgttcgatt tttctgcaag      1680
     agaaaatgtg gaagttgatt caagtggcag tcccactact cctcgcgaag ccgttggctt      1740
     tgggtttgat tcaattttct tgtcttcttt tggtacttga ttcagttttc ctgtgtgtat      1800
     cagattattt attgactcat tatgaagcac actttgttac gcaccattgt gtagtatatt      1860
     tgcaaataaa aaaatcatat ttaaactaca taaattcttg cctttcctaa tgccatcgaa      1920
     gtaactttga ttttggatac tgtcgccatg tagtagctgt gaactcgtgc tcgccagagt      1980
     ggccttcaaa catagttaaa gaaggtaatc gttgcgaaag aaggttacaa gttacaagtt      2040
     ataaacagtc gctttttgcg tgattagttg ctatgcattc tcgattcacc tacttttcta      2100
     taagtgtgta tcaattgctt ttgtatgaat ggtgtggcct gctttattcc ttaactggta      2160
     ctatacaaat tattatacaa ataataataa taataataat aataataata ataataataa      2220
     taataataag ttattataag tcaaatataa ggtaaaaatt ataataattt aagactcttt      2280
     tcttcaatga tgcactaaac aaaagcttag attgaaatat tactattcta agctcgaaag      2340
     tgataaataa cggatgggaa ttaacgtaga taagtgaaac ggtaatattt tgctgaatca      2400
     tctatttgtc tgcaaagact attatacata actttaagcg cttaattgta acaataacag      2460
     ttattcacat ataataaaat gtaacaaata tttcttaaat aaaaaataca taaatatgag      2520
     gcaaatctat ttcaattcgt taattatttc attcttacct ttttctattt agctttcccg      2580
     tcagtgataa aatcacaagc tcgtgagcct tctaacaatg tagtacaaca atgtagtact      2640
     aacaatgtag tacaacaaat tgaaacggac gagggtcgca tcgatacatc tgtagaacat      2700
     catgatgacg atctaccatc agataatatc acacatgcga aatgccaaaa ttgtgtacaa      2760
     aatgaaacag aaattgaact tttaaatcaa actcttaaaa aaacacaaga taaatgtaac      2820
     aacttattag aggttaatac atttttatca aaacagcttg aaatcgtcag caaagaactt      2880
     acacaatccc aaaaagaaat tgaactttta aagactaatc ataataaatt taaagatgtt      2940
     gctatatcac caaacgaatt cacaaccaga atgaaaaatg ttttaaaaga tacgcttaca      3000
     tcaaatcaaa tagatctgat tactgaggaa cgtaaaagag ttagatggac taaagcagaa      3060
     ttaagtaaat tttttacact tcgttattta ggaaaaagag catatcagta tttaagagat      3120
     gatttaaatt tccctgcagc atcaatttca acactacaac gatacggaag aacattgaac      3180
     ctcaagcaag gaattttaga tgatgtaatt aatttgctaa aaaacattac cgttgatctg      3240
     ccggagtgtc atcgggaatg tgttttgtca ttcgatgaaa tgaaagtgaa tagaatttta      3300
     gagtatgatc cggcctctga tgaagttctc ggtcctcaca attatttaca agtagtaatg      3360
     gcaagaggat tgttcaaaaa ttggaagcag ccagttttta ttggttttga ccaacaaatg      3420
     accaaagaaa ttttatttga attaatcaaa cgtctttatg ctataaagat aaacgttgtt      3480
     gcaatagtta gtgacaattg ccaatctaat attggatgct ggaaagattt aggtgctcat      3540
     gactactgtc atcctttttt cagtcatcca ataacgaagt gcaatatata tgtttttcct      3600
     gatgctcctc atctgttaaa actaataaga aattggttga tagatactgg ttttgaatat      3660
     aacaataagt tgataaaggc agataaattg tttgagctgg tagcttatag aaatgcagct      3720
     gaattaactc ccgttcataa actaacacaa aatcatttgg ttatgactcc tcaagaacgt      3780
     caaaatgttc gaagagcggc cgaagtttta tccagaacca ctgctattgc attacaaagg      3840
     tactttcctg atgattgtga tgcacaagag ttagcctcat ttatagagaa agtcgatatg      3900
     tggtttagtg tagctaactc atattctcca tgtgctaaac ttcattacaa aaaatctttt      3960
     aatgcaaatg aaaaccaatt agcagcatta agtgacatgt ttgaactgat gtcaaacatt      4020
     acagcattgg ggaaaaaatc tatgcaagtt tttcaaaagt ctcttttgat gcacataaca      4080
     tcgctaaaaa tgttgtacga agatatgaga aaaaaacaca gcatcgtata tatctctact      4140
     tataaggtta gtattgaaca atagtgaaag atttcagtca actaatgtta tgttttattt      4200
     ttgtttacag cttaatcagg atgttttgga gaacttcttc tctcaacttc gccaaatcgg      4260
     aggcgtacac gaccatccat ctccattaca ttgcatgtat agaatccgaa tgatgattct      4320
     tggtaagtca ccgactacat tgaaaaatca tacagagcta aaaaatgatg atgtagagaa      4380
     tagtcatgag catcacgagg agtttctatc tgcaacagtt ttttctgtag cggatatccc      4440
     tcaatctgtt ccagatattt cggtcatgga aaaaacaaat caaatctgcc aagcaattga      4500
     agagtgtagt caagagtcgg acttaataag tacagtcagt agtacctgca atgtgcaatc      4560
     agctcaagaa agtgatggac tgcaatatgt aatgggatac atagctaata aatataatac      4620
     taagtatcca gaattagatt taggcgtcca aacttttaaa ttaacaactg accattgtta      4680
     tagtcaacct cctacctttg tgcaacattt gtccgcagga ggattgtttg aaccatcgcc      4740
     tacattttta ttattaggta atcgaatgga aaaaattttc ttaaaaatgc atccggatgg      4800
     tacctttagt aagactaaaa aaattgttgc caaaattgcg aaaaatattc aaaaccagat      4860
     aagcgaacta ccagtcgaaa taatacggac ctttgccaaa caaagaatga ttgttagaat      4920
     gcgcttcctt aatttaaaaa gtagtaccga aaatctcatg aaaagcaagc gaaaacatgt      4980
     aaatcaacat ggaaaaggcg caaaaaaatg agaaaaatat tgaactagtc tatacattat      5040
     ctattctcat gtaaatcaat taatgagaca tgtaattaat ttgttttatt tttgttgtgt      5100
     taatgccgat agtatttatt taattattta ttggactatt tactaagata tttgctagtt      5160
     agtttatgta aattatcttt ttatctatta ttttatttat ttattcattt atttatttat      5220
     ttatttattt atttatttat ttgtttgtta gtataatcaa attgttggta gtcgtataca      5280
     tagattttcc ttgtgtttta tccattaaac agacttcatt tttttattct gaaggctacc      5340
     atatgtgatg cttatttatt aatctgtgtt atgtagtaat ctgcatccat ttataatatt      5400
     ttctttggtt atttgtaatt ggctaccggt ttttgattca atgtttcagt cctaatactt      5460
     gtaaatgttt gaatgagtga tttatcgtgc attttttggg acagtctggt ggtacagtca      5520
     agaacatacc cgtcatgtgt ttaagcccgt atctatcgta ctccccaaaa gattagaaga      5580
     tgtacaagaa gattcataac gccgaataga tctagtttgc tttcatttca tcgtctgcaa      5640
     tgccccagaa ttaattacat cacactacaa tggtcttcat ggggttctca attaggtata      5700
     tttaaataga tcatgatgaa tcgttgtagt aagaaaatac tgatatgctc ttttatattt      5760
     aataagaacg gacctgccgt attccacgta ttattttttt ttattctgta ttattgtaat      5820
     gaactattga ttttttgctt taataacccg taatattttg aaatgtatta tagcaaatat      5880
     gtaaaatagt ccacattacc tcattttcat gtataaataa ccattttgta acaacaatat      5940
     gatctataat cgtaaatcac ttgttaaggt ttgtcagtat attttaggat ttcacactga      6000
     tgtaaaacac tgaattaaaa catgcaaaaa cgctagcacg taaggtattc cgctgtatta      6060
     gaaattattt agaataatac ggtaataaaa catgagaact ttttaaattg ttatttaatg      6120
     catgaaagtg cattgtgtta ccaatacact gaaatgtaca aataaagcaa aaacaatcaa      6180
     gaaactttac ccgttcacca actgtatttt ctcactcact catccgaaaa attaccattt      6240
     tgttaaagag taagtaagta agtaatggaa gatccaaaat taaggtgtta cgatcagtgg      6300
     ctcggattaa gggtgtcggg ggccctaggc ggtaagacta gttgaggccc cctgtcaatt      6360
     gtaaatggtg ttctaggggg tcagtcgata atcagtcaca ggctctaaaa tttgctggca      6420
     gtggaggggg gggggggggg ggagggtgaa aatgatttgc cagccttggg gccacaacgt      6480
     ccatccttcc gggggccatt gccgctatta ctctgtccat acggcatact atagacttca      6540
     gaactacggg tcccctaaat cggcggggcc ccaggcgacc gcctagtccg tctaccggta      6600
     gatccgccac tggttacgat gagtatctca tagaaatgca ttattttgca tacttcttgt      6660
     ttcctattct caagatgagc taaaacgcac cagtttttgc caatatatct aagcagtttg      6720
     ttccttcctg ggcaaatctt cctaacgtgg ccacgtatgg aatcataaat tagaaaataa      6780
     ttaaaaccgg tataaactta cagctacgcg cagttgttaa ccattatacg ctgtcagtaa      6840
     aattttcgag gttaatgata agcatatggc acaattcacc gcttgactgt aagtggttcc      6900
     tgacactctt gcggaaggta aaccattatc ctgattacaa actgcttcca atttttaggt      6960
     ataactaatg ccatacaaat caacaatgct aagctttctg aggtgtacgg tgaatcggat      7020
     atcctaacgg tagtcagggc ctatgatacg atggctgggg catgtaatga aaatgccgta      7080
     gtaatgccct ccaagaaagt ggtcggtcct gtgtttggta ctaggtggat ccggaatcag      7140
     gctaagcagg gtctgtcggt gatcggatgc ctgcattgat ggacgctgaa ggcatcgagc      7200
     ctcctgataa aataatagta gtcccggcca ttcaacggcg ctgggctcaa tcgtaagcag      7260
     gccaatgaga aagaaaaagt gagataagag caggatttga ggattggagc ttttggaagt      7320
     tattggagtt agtttccgtg acctgtgatt acatggagct agatatgtac acgaagctgc      7380
     atatgaagtt atcagcacga gtaacaagga actggaaaga ttgcgataaa taaaagttta      7440
     gtttgtaaca cctaaagcaa taaaccacat agtcagtttt acatatacgc acgatttgta      7500
     ttatttcaca tgttttttct gtatttgaac taaaaaatgc gagctaaaag aacagcaccc      7560
     atctgctgca attatttgta aacactttct tactgaactg tcaaaacagg attcaaaatg      7620
     tcagaccaga aacaagctat aattcgacct ctatcctcaa tagaccttg                  7669
//
ID   PAO_I       repbase;    DNA;    INV; 3534 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   31-MAR-2012 (Rel. 17.03, Last updated, Version 3)
XX
DE   Bombyx mori retrotransposable element Pao.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Long terminal repeat (LTR);
KW   internal portion; Repetitive element; retrotransposable element;
KW   PAO; PAO_LTR; PAO_I.
XX
NM   PAO; PAO_I.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3534
RA   Xiong Y., Burke D.W. and Eickbush H.T.;
RT   "Pao,a retrotransposable element from Bombyx mori with a highly
RT   divergent reverse transcriptase domain and unusual long terminal
RT   repeat.";
RL   Unpublished (1993).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 3534 BP; 1281 A; 882 C; 783 G; 588 T; 0 other;
     tttcatggtc cattcgagcc ggatagagga cacatttcat tattctttcg agcccggtag        60
     aggatacgtt ttgaaaagga aactggaaca atgccgataa cgcggtcaac aggaagagga       120
     cggatcgaaa ctgaacagtc gccgccctca gaaaccacag ctacaacaca gagcatgtgg       180
     acagaaacaa ccgcgaatac cgtcatgagt ctggtagccc ccacaacaga atcatcgtgc       240
     gcaacagcca acacggaagc cacgacgaaa ctcgcagaga aacctgggaa ctcaaaaaca       300
     gaggccgtca aacagtatat agccaaacag aatgacgtgc caacaaaaca gcgcgccggt       360
     acagtcaaaa gtgaccggtc gcgaaacaga aaagaacaga agatagccaa agctagagaa       420
     gagctcgccc gcctacaggt ggagttagca gccgcccgat tggccacgct cgaagctgga       480
     tctgatgacg aaaacagcga atcagaatac agtaagtcag aactcgacga aagagtgggc       540
     acgtggttgg aaacccaacc cacaaaaacg gaaaatcacg accgacataa ggaaacaccg       600
     gcgggagcct gcgacaaaca agacttctca gatctaaccg cagcaataac actcgccgtc       660
     aaagccgccc gcgaaccaag atacacagaa ttgccattct ttaatggaaa tcaccaagat       720
     tggctatcct ttcgtgcagc ctatcacgag acgatgaatt catttacaaa aacagaaaat       780
     ataaacagac tcagaaggaa cctgaaagga agggcaaagg aagccgttga cggattactt       840
     ataacgaacg ctgatccgtc cgacgtcata agaagtctag aagcgcgatt cggaagaccg       900
     gaaacaatag ccataacgga gttagacacg ctacgagcgc tgccaagact aacagaaaca       960
     ccaagagaca tttgtatatt ctccagtaag gtgaccaacg ccgtagctac gcttcgtgca      1020
     ttaaattgca cacattattt atataatccg gaaactacca aaacaatgtt agaaaaactc      1080
     acaccaacac tacgttaccg atactacgac ttcaccgcgg tacaaccgaa ggaggatccg      1140
     gatctgatta aatttgaaaa attcatgaaa agagaagccg aactgtgcag cccttatgca      1200
     cagcccgaac aggcggggca ctactcgcag cccgcacaac acaacagacg cacacagaac      1260
     gtgcacatag tcagtgagaa gccatcacga gctaaatgtc cggtatgtag caacactgaa      1320
     cacaccacaa cagactgcta catattcaag aaggcagact caaacacaag atgggacatc      1380
     gctaagaata aacacctgtg tttccgatgt ctacagtata agaataaaac ccacaactgt      1440
     aaaccgaaga cgtgtggcat taatgattgc aaatatactc acaacaagat gctacacttc      1500
     gacagaaaaa ttgaaaaaac agacaacagt gacaaggaaa caacagagaa cattaattcc      1560
     gcttggaccg gaaaacagaa acagtcctat ttgaaaataa tcccagtcca agtacaagga      1620
     ccgataggca cggttgatac atacgcgctg ctcgacgatg gatcaacggt aacactgata      1680
     gacgaaatca tctgcaagaa gactggaaca acaggaccaa tcgatccgtt acacatacag      1740
     gcgattaaca acataaaatc aacggaaaca aggtcaagaa gagtcaacct cacgctcaga      1800
     ggcctcaaca gtcgaaaaga aataatacaa gcgagaacag ttaacgacct acaagtaaca      1860
     gcacaaaaaa taccaaagga acagatagac gagtattcgc acctacaaga catcagtgac      1920
     atcatcacgt acgagaacgc gaaacctgga atcctgattg gccaagacaa aaactacact      1980
     ggcacatgtt actagcttcg aaagttagac gaggcaacag gaatcagcca atagcgtcac      2040
     tgacacctct aggctgggta ttgcatggag gtcgcactcg taccttaagc caccacatta      2100
     aatcatgcta gcgaaaccca ggaagatgat aaaatagaaa atctggtaaa acagtatttc      2160
     gctatggatg cgctgtgcat cacaccaaga agaccaaaaa cagacccaga ggaacaggcg      2220
     cttcgcatcc tcaacagcaa tacagtccac acaacagatg gaagatacga aactgctctg      2280
     ctctggaaaa cagataatgt cagtctacca gacaactaca ataactcgtt aaagcgactg      2340
     ataaatatag aaaacaaact cgatcataat ccggaactga aacagaaata cacagaacag      2400
     atggaagcac tcgttgcgaa aggctacgcc gagcccgctc caaaaacaaa aacagagaac      2460
     agaacgtggt atctacctca cttcgccgtc gtgaaccccc cgaagccgga aaaactccga      2520
     gtcgtccacg acgccgccgc cagaacaaga ggggtagctt taaatgatat gctgcttaag      2580
     ggaccgaacc tactccaatc actgccagga gtgataatgc gattcagaca gcataatata      2640
     acagcaacag cagacatcaa agagatgttc atacaagtaa aattgagacc tgaagacaaa      2700
     gacgcgctcc gttatctctg gcgcaaagat cagcgagata acaagccccc agaagaaaac      2760
     agaatgacct cgttgatctt cggggcgtca agttctcctt ccacagcaat atatgtaaag      2820
     aacttgaacg cccagaaaca tgaagccacg cacccggagg cggcagccac aatacagaac      2880
     agacattacg tagacgacta cttggacatt tttaaaggtt taaaagatgc agtactcgta      2940
     acaacagact ttcgtcgaaa acacgaaaga aagccgacct cgaagacctt ctggatcgac      3000
     agtgagatag tgttaagatg gacaagaacg gaatcacgct cgtacaaacc atacgtcgcc      3060
     caacgcctga cagctataga agacagttca acaataaacg agaggcgatg gttacccacg      3120
     aagcacaacg tagccgacga cgtgacccga cacgtcccaa tgtcgtacca gaatgaacat      3180
     agatggttca gatggacaga attcctacgc caacgacaga actcctggcc gacggaatcg      3240
     gcgtcagaaa ctacagaacc gatgggtgaa gtaaacatag cagctgcagt accggcggga      3300
     gcttcatggc cgaggcgtcg ccatgaaaag tggaagtgcc agccacgaaa tacacgcatg      3360
     cgagggaaaa gtgatagcga catatccagg tcccgacaac gtggggcgca tcgtagacat      3420
     cagaaccaag ggtggagttc tacggagacc agtacgaaaa ctactgatcc tgcccatcga      3480
     agaagaccat cctgcaccga gaagaatgcg actgactcgc acggcgggag taat            3534
//
ID   PAO_LTR     repbase;    DNA;    INV; 629 BP.
XX
AC   L09635;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   31-MAR-2012 (Rel. 17.03, Last updated, Version 2)
XX
DE   Bombyx mori retrotransposable element Pao.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Long terminal repeat (LTR);
KW   Repetitive element; retrotransposable element; PAO; PAO_LTR;
KW   PAO_I.
XX
NM   PAO_LTR.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-629
RA   Xiong Y., Burke D.W. and Eickbush H.T.;
RT   "Pao,a retrotransposable element from Bombyx mori with a highly
RT   divergent reverse transcriptase domain and unusual long terminal
RT   repeat.";
RL   Unpublished (1993).
XX
DR   GenBank; L09635; Positions       1     629.
XX
SQ   Sequence 629 BP; 234 A; 130 C; 128 G; 137 T; 0 other;
     tgtgcaggac gaaatagggt tttttatagt ttaagaaaca aatagattta atttaaccgt        60
     taataagtga ttacgtaata aatgtataat cttaagttat tttatagtca atatgttagt       120
     gtatcagatc agagaatgta aatagaccaa taggaacgat ttgtggagcg ctttcactac       180
     ggtaacatac agatcaaggg acccccgaaa gtggcgcgtc gatagccggt cgcgagatgg       240
     ggtactgaaa taaatataaa aggatggcca tttataggca aaaacagttc tcagtggatc       300
     aagacagaaa cagttcccag cgaatcttcg acaaagaaac atcagcaaga tagaaacagt       360
     tctcagcaga tcatcaagac agaaacagtt cccagtgaat cttcgacaaa gaaacatcag       420
     caagacagaa acagttacca gcagttctcc gatagtacag ttaccaccag tgaatcagct       480
     accagtgaac cagacagtta cctgtgaaac ctcgctacag aagccgaaac ccatcgaaag       540
     aaacagccgt cttctaccag cgcacaaaca gacagcaaaa accattatta cacgactcgg       600
     aaacagccat acagaccggg tcgtgtaca                                         629
//
ID   PARIS       repbase;    DNA;    INV; 1730 BP.
XX
AC   U26938;
XX
DT   27-JAN-1997 (Rel. 2.00, Created)
DT   27-JAN-1997 (Rel. 2.00, Last updated, Version 1)
XX
DE   Tc1-like transposable element Paris.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARIS;
KW   Tc1-like transposon Paris; terminal inverted repeat.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-1730
RA   Petrov A.D., Schutzman L.J., Hartl L.D. and Lozovskaya R.E.;
RT   "Diverse transposable elements are mobilized in hybrid dysgenesis
RT   in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(17), 8050-8054 (1995).
XX
RN   [2]
RP   1-1730
RA   Petrov A.D.;
RT   "PARIS.";
RL   Direct Submission to Genbank (11-MAY-1995)Dmitri A. Petrov,
RL   Organismic and Evolutionary Biology, Harvard University, 16
RL   Divinity Ave, Cambridge, MA 02138, USA.
XX
DR   GenBank; U26938; Positions       1    1730.
XX
CC   repeat_region 1..242
CC   /note="left terminal inverted repeat"
CC   CDS 394..1440
CC   /codon_start=1
CC   /product="Tc1-like transposase"
CC   repeat_region 1489..1730
CC   /note="right terminal inverted repeat".
XX
SQ   Sequence 1730 BP; 607 A; 312 C; 313 G; 498 T; 0 other;
     cagtttgtca agtaattgtt tgcaaagtga aaaacagcac acaaattcat ttttaggctt        60
     atattttacc gaattaaact atttcttctt catttttttt gcatataatt attattctaa       120
     gtattcttaa tagatataag gcacaaacat aacaaaattc aaagcgcaaa tgtaaaaaaa       180
     acagtcaaaa ctaaaattag gcaaatattg cgctgtcaat taattctttg caaaatgcaa       240
     acacaattcg aaatagagcc caagctacct aacggtactt caaattcgaa gaaatttgaa       300
     tgcatgagtc attggtatgc agtgtgcgaa tgccttctaa acgattttgc gattttaaca       360
     gttcacatct tgcctaattg agagcttctt acaatgcctg gccaacgaat taatgaaaac       420
     gttattcaat tagtttattt ccactaccac aaaggaaaat gtgctaagga attggcggaa       480
     atgttctcaa ttaagctaag aactatttat aatattatta accgcgccga aaaagaaaac       540
     agattggaat taaagcactc cggaggcagg ccagcaaagc tcagtagacg cgatcattca       600
     aaaattttaa aacagattaa tgaaaatcct caaactagcc tcagacagtt agcattggac       660
     ttgaaaaatg actgcaataa gacagtgagc cacgagacag ttcgtaaagt tttaaaaatg       720
     cataaatact cctcgcaaat agctagaaag aagccactac tatctgcagt aaatattcag       780
     aggcggctta atttctctat tacgaatgtc aacaagcccg cggagtactg ggatgacgtt       840
     attttttgcg acgagactaa aataatgtta tactatcatg acggacccag caaagtttgg       900
     agaaagccca acacagctct ggaacaaaag aatataatac caacagtaaa gtttggcaag       960
     ctgtctgtaa tggtgtgggg ctgcatatcg tcgaaaggtg ttggtgagct gcgcattttc      1020
     aacgatgtga tgacgaagga attttacttg gacattctga agaatgaatt gtcaaggagc      1080
     gcaataaagt ttggcttcgt agacccccaa aaccccagta aacagaggta caagctttat      1140
     caggacaacg accccaagca caaatcgttt ttgtgcagga cttggctgct gtataattgc      1200
     agcaaagtca ttgacacccc tgcccagagt cctgacttaa acccgattga aaatttgtgg      1260
     gctttcctaa agaagcgcgt cgggaaacgg agcccaacta acaaaaacgc tctcatcaag      1320
     gccattcaag aagaatggat aaaaataccc gaaatatatg acctgcataa ccttattcag      1380
     tcaatgtctc gtcgtctacg ggctgtaatg gatgctaatg gccaatatac caaatattag      1440
     taccacaata gctataattt cctagattta gttatgtata cagtactagt ttgcattttg      1500
     caaagaatta attgacagcg caatatttgc ctaattttag ttttgactgt tttttttaca      1560
     tttgcgcttt gaattttgtt atgtttgtgc cttatatcta ttaagaatac ttagaataat      1620
     aattatatgc aaaaaaaatg aagaagaaat agtttaattc ggtaaaatat aagcctaaaa      1680
     atgaatttgt gtgctgtttt tcactttgca aacaattact tgacaaactg                 1730
//
ID   PARISa-1_DW repbase;    DNA;    INV; 1488 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila willistoni genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1488 BP; 552 A; 238 C; 261 G; 433 T; 4 other;
     cagtttgtca agtaattctt tgcaaaatga aaaaagtcac acaaattcat ttttaagctt        60
     aaaatttatt ataaacgatt actttttttc aacaaatttt tttagtaact tatagatata       120
     actattctta acaaatataa ggcacaaata tttcaaattt tcatgcaaaa gaaacaaaaa       180
     aaacaaaaaa agaaaactgt caattgattc agtaaaggaa aatcagcaaa ggaactgtcg       240
     gaaatgtttt caataaagtt aagaaccatt tataatataa taaatcgggc ggagaaagaa       300
     aataggttgg agttaaagag gccggccatc taagttgaca agacgngatc actcaaaaat       360
     tatcaaagag gtcagcaata acccccaagt cagcctaaga gagttagcga naaancttaa       420
     aaatnattgc cagaagtccg taagccatga aaccataagg aaggtcttaa agttccataa       480
     atactcatca aaaatagcga ggaagaagcc attactttca gccctaaaca ttgagaggcg       540
     gctgaactac tctattgcca atgtccacaa tccccttgag tactgggatg atgttatttt       600
     ttgtgatgag acaaaaatta tgatgtacta tcatgatgga ccaagtaaag tgtggcgaaa       660
     gcctaaaaca gcgcttcagc aacaaaatat agttcccact gtcaagtttg gcaaattatc       720
     ggtaatggtg tggggttgca tctcatcaag aagggttgga gaactacgaa tttttacgga       780
     aataatggat aaggagttct atttggatat cctaaaaaac gaattagtaa aaagtgcagc       840
     aggttttggt tttattgacc cccaaaaccc acataagctg aagtataagc tctatcaaga       900
     caacgacccc aaacacaagt cgctattatg caggtcctgg ctactatata attgcagcaa       960
     agtgattgaa acacctgccc agagtcctga tctaaacccc atcgaaaact tgtgggcgtt      1020
     tttgaaaaaa cgggtgggta gacgaagccc aacgaataag acggctctga taagggcaat      1080
     tcaagaagaa tggtctaaaa ttcccgaaat ttatgacctg cagaacctag tacattcgat      1140
     gccccgacgt cttcaggcag tactagatgc aaatggaaga cacaccaaat attagatcta      1200
     taaaaaataa tattttccta gttttaagtt gacttcaaat aattgtttgc attttgcaaa      1260
     gaattaattg acagtgtgaa tttcgacgaa ttttcttttt ttgttttttt tttgtttctt      1320
     ttgcatgaaa atttgaaata tttgtgcctt atatttgtta agaatagtaa tatctataag      1380
     ttactaaaaa aattttttga aaaaaagtaa tcgtttataa taaatttaaa gcttaaaaat      1440
     gaatttgtgt gacttttttc attttgcaaa gaattacttg acaaactg                   1488
//
ID   PARISa-2_DW repbase;    DNA;    INV; 1695 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila willistoni genome. Subfamily II.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa-2_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1695 BP; 583 A; 298 C; 316 G; 495 T; 3 other;
     cagtatgtcc aataattgtt tgcaaaatga aaaaagttac acaagtttaa cttcaacagc        60
     gaaaaatgaa cgaggaggcc tttttgtaca aaaaattttt ataaactttt attaacatag       120
     gtattgacta taggaaagta aaaaaaaatt caagaattcc aagaaacacg tcaaagaaat       180
     gcaaaaatca gcacagaggc aatcttgact ctgtctatta attgtttgca aaatgcaaac       240
     cctggtcgaa gaatgtcaaa aggaaaacta acggaacgtc aaaaccaaaa acgacctgtt       300
     acaagttttt cccaagtctt ctttgcactc attcttttca aaaaatttct ttggttgatc       360
     acacgtcctt cttatttttg ctttttacaa tgcctggtaa acgaactgat gaaaatttaa       420
     tacaactggt gtattttaat catagcaagg gcaagacttc gannnaattg gccgaaatgt       480
     ttaatattaa attaagaaca gtatataata ttataagtcg tgcggaaaag gacaataggc       540
     tggaattgca cagctctaag ggcagaccat gaaagctctc cagacaagat tgttcccata       600
     ttttaaaatc tgtggaaaat aaagcggata caagcctccg ggagttagct gaggacatta       660
     aaattaatct caaaaagacc gtgtgtcctg agactgtccg aaaagtattg aatgtccaca       720
     agtattcttc gtatgttgcc agaaaaaagc ctttgctgtc aggtataaac attaaaaaaa       780
     gactgaactt tgctatattg aacgctggga agccaccaga gcattggagc gatgttatat       840
     tctgcgacga aacgaaaatc atgttatact acaacgatgg ccctggtaaa gtttggcgca       900
     agccaaaaac agccctacag aacaaaaata ttgtccccac agtgaaattt ggaaagcttt       960
     cagttatggt ttggggttgt atttcctcga aaggcgttga agagctgcga atattcaacg      1020
     aaattatgac aaaggaatat tatttggata ttttgaaaag ggaattgact acaagtgctc      1080
     acaattttgg cttcgtggat catgaaaacc cgaacaaact gaaatacaaa ctgtatcagg      1140
     ataacgatcc gaagcataag tcgcatttgt gtcgtacttg gctattatat aactgtcgta      1200
     aagtgattga cacaccccca cagagtccgg atctcaatca cattgagaat ttgtaagcat      1260
     tgctgaagaa aaaagtagca gaacgtcgcc ctacctctaa agcagactta atcaagtgta      1320
     taaacgaaga gtggcaaaaa atacccgaac attacgactt gactgtcctc gtattgtcga      1380
     tgtcgcgacg cctccaagga gtactggatg ctaatggagg acacactaag tattagaggc      1440
     ctttacagtt aaatgtttgc attttgcaaa caattaatag acagagtcaa gattgcctct      1500
     gtgctgattt ttgcatttct ttgacgtgtt tcttggaatt cttgaatttt ttttttactt      1560
     tcctatagtc aatacctatg ttaataaaag tttataaaaa ttttttgtac aaaaaggcct      1620
     cctcgttcat ttttcgctgt tgaagttaaa cttgtgtaac ttttttcatt ttgcaaacaa      1680
     ttattggaca tactg                                                       1695
//
ID   PARISa-5_DW repbase;    DNA;    INV; 1478 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Paris-like element found in Drosophila willistoni genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa-5_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1478 BP; 493 A; 264 C; 293 G; 428 T; 0 other;
     gagagctttt ggtacacata aattttataa acttttatta acataggtat aaactgtagg        60
     aatataaatg caagaactcc aagaaggacg ccaaggaaat acaaaaatca gccaagaggc       120
     aatcttggct ttgtctatta gttgtttgca aaatgcaaac cctggtcgaa gaatgacaaa       180
     aggaaaacta acggaacgtt aaaacgcaaa acgagctgcc acaatttttt cccaagtctt       240
     ctttgcactc attcttttga aaaattttct ttggttgatc acaattgttt acaatgcctg       300
     gtaagcgaac tgatgaaaat ttaatacaac tagtgtattt caatcatagc aaggacaaga       360
     cggcgacaga attgtcctaa atgtttaata ttaaattagg aactgtatat aatattatta       420
     attgtgcgga aaagggcaat aggctggaat tgcacagctc taagggcaga acaagaaagc       480
     tttctagatg agattgttcg catattttaa aagctgtgga aaataaaccg gatacaagcc       540
     tccgtattga atgtccacaa gtattctttg tatgttgcca gaaaaagggg tttgctgtca       600
     ggtataaaca ttgaaaaaag acttaacttt gcaatgttga acgctggaaa tccaccagag       660
     tactggagcg atgttatatt ctgcgacaaa acgaaaatca tgttgtactt caacgatggc       720
     cctggtaaag tttggcgcaa cccaaaaaca gccctacaga acaaaaatat tgtccccaca       780
     gtgaaatttg gaaagctttc tgttatggtt tggggttgta tttcctcgaa aggcgttgga       840
     gagctgcgaa tattcaacga aataatgaca aaggaatatt atttggacat tttgaagagg       900
     gaattaacaa caaaagcgca caattttggc ttcgtggatc atgaaaaccc gaacaaactg       960
     tatcaggata acgatccgaa gcataagtcg cttttgtgtc gctcttggct attatataac      1020
     tgtcataaag tgattgacac gcccccacag agtccattgc tgaagaagag ggtagcgaaa      1080
     cgtcgcccta cctctaaagc agacttaatc aagtgtataa acgaggagtg gcgaaaaata      1140
     cccaaacatt tcgacttgac tgccctcgta tcgtcgaggg cgcgacgcct ccaaggagta      1200
     ttggatgcta atcgaggaca cactaagtat tagaggcctt taaagatgaa tgtttgcatt      1260
     ttgcaaacta ttaatagaca gagtaaagat tgcctctgtg ctgattttca tatttctttt      1320
     tcatccttct tggagttcat gcattttctt tatattccta tagtttaata aaagtttata      1380
     caaatatttt gtccaaaaag ccctccttgt tcagatttcg ctgttgaagt taaacttttt      1440
     tcattttgca aacaattact ggacatactg taccatga                              1478
//
ID   PARISa_DAm  repbase;    DNA;    INV; 437 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Paris-like element found in Drosophila americana genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DAm.
XX
OS   Drosophila americana
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 437 BP; 146 A; 79 C; 95 G; 117 T; 0 other;
     tgcaatagga cagtgagcca cgagacagtc cggaaagttt taaaatgcat aaatattcct        60
     caccaatagc ttgaaagaag ccctatctgc agtaaatatt cagaggcggc ttaatttctc       120
     tattaccaat gtcaacaagc cagcggagta ctgggatgac gtattttttt gcgacgagat       180
     taaaataatg ttatgtatat tatcatgacg atcccagcaa agtaagaaga aatcccaata       240
     cagctctcga acaaaagaat ataataccaa cggtaaagtt tggtaagctg tctataatgg       300
     tgtggggctg catatcatcg aaaggtgttg gtgagctgcg cattttcaat gatgtgctga       360
     cgaaagagtt ttactttgac attccaaaga gtgaattgtc aaagagcgca ataaagtttg       420
     gcttcgtaga cccccaa                                                      437
//
ID   PARISa_DAn  repbase;    DNA;    INV; 1722 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila ananassae genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1438
FT                 /product="PARISa_DAn_1p"
FT                 /translation="AMPGKRIDENLIQLVYFNYYKGKTAKELSTLFDIKLR
FT                 TVYNIINRAEKENRLHLNNSAGRPPKLTRRDDSKILKKINDNPQTSLRQLA
FT                 LDLKNDSNKIVSHETVRKVLNKHKYSSHVARKKPLLSALNIDRRLKFSIAN
FT                 ANRPAEYWDDVIFCDETKIMMYYHDGPSKVWRKPNTAFNQKNVIPTVKFGK
FT                 LSVMVWGCISSKGVGELRIFNDIMTKEFYLDILKKELVKSAKDFGFVDPQN
FT                 PDKLNYKLYQDNDPKHKSLLCKTWLLYNCSKVIDTPAQSPDLNPIENLWAL
FT                 LKKKVAKRGPTNKKALISAIQEEWKSIPNNYDLKDLIHSMPRRLNAALDAK
FT                 GQHTKY"
XX
SQ   Sequence 1722 BP; 617 A; 294 C; 296 G; 515 T; 0 other;
     cagtttgtca attaattctt tgcaaaatga aaaaagtcat tgaaattcat tttcaagtgg        60
     aattttcact aataataatt caatttattc cattttttct ttcacattat tgttaaggca       120
     cttatattct acaattataa tctaaaaaca aagcgaattt caaaataaaa cataaacaaa       180
     atccttaaaa ataaaaaata ggcacttcat aagctgtcaa ataattcttt gcaaaatgca       240
     aatagaagca aaagagaggc gccaagcaaa gcaacggtaa aagaaaattc gagaaaaatg       300
     aacacctgcg tctttgcaat gttttgatac cccattttcg ttgcaatttt tgtttggtca       360
     agttcagaat tattcttatt ccgctattta agcaatgcct gggaaacgaa ttgatgaaaa       420
     cttaatccaa ttagtttact ttaactacta taagggtaaa acggcaaagg aattatccac       480
     tttgtttgat attaaattaa ggacagttta caacattatt aatcgagcag aaaaagaaaa       540
     ccggctgcat ttaaacaatt ctgctggtag gccaccaaag cttaccagac gtgacgattc       600
     aaaaattttg aaaaaaatta acgataatcc gcaaacctca ctcaggcagt tggccttgga       660
     tttgaaaaat gactccaata aaatagtgag ccacgagacc gtccgaaaag tgctcaacaa       720
     acacaaatac tcgtcacatg tagccagaaa gaaacctctg ctttctgctc tcaacatcga       780
     caggcggcta aaattttcta ttgccaatgc taataggccg gccgagtatt gggacgacgt       840
     tattttttgt gatgaaacta aaataatgat gtattatcat gatggtccca gcaaggtttg       900
     gagaaagccc aacacagcct tcaaccagaa gaatgttata ccaacagtaa agtttggcaa       960
     attgtctgta atggtttggg gatgtatttc atccaagggc gttggagagc tccgaatatt      1020
     taatgacata atgaccaaag aattttattt ggacatttta aaaaaggagt tggtaaaaag      1080
     cgctaaggat tttgggtttg ttgaccctca aaacccagat aaactaaact acaaacttta      1140
     tcaagacaac gaccccaaac acaagtcgtt gctttgcaag acctggctgc tttacaactg      1200
     cagcaaagtg attgacactc ctgcccagag tcctgacttg aaccccatcg aaaatttgtg      1260
     ggctttgtta aagaaaaagg tggctaaacg gggacccact aacaaaaaag cgttaatttc      1320
     agcaatccaa gaggagtgga agagtatacc taataattat gacctaaagg accttattca      1380
     ttccatgcct cgacgcctga atgctgcatt agatgctaag ggacaacaca ccaaatatta      1440
     gaataattaa ggctatagtt tttaagtttt cgtgatcatg tgttcatttt gcaaagaatt      1500
     acttgacagc ttatgaagtg cctatttttt atttttaagg attttgttta tgttttattt      1560
     tgaaattcgc tttgttttta gattataatt gtagaatata agtgccttaa caataatgtg      1620
     aaagaaaaaa tggaataaat tgaattatta ttagtgaaaa ttccacttga aaatgaattt      1680
     caatgacttt tttcattttg caaagaatta attgacaaac tg                         1722
//
ID   PARISa_DBu  repbase;    DNA;    INV; 1731 BP.
XX
AC   AY756169;
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Paris-like elements found in Drosophila buzzatii.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DBu.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
RN   [2]
RP   1-1731
RA   Casals F., Caceres M., Manfrin M.H., Gonz�lez J. and Ruiz A.;
RT   "Molecular characterization and chromosomal distribution of
RT   Galileo, Kepler and Newton, three foldback transposable elements
RT   of the Drosophila buzzatii species complex.";
RL   Genetics 169(4), 2047-2059 (2005).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1731 BP; 615 A; 287 C; 308 G; 521 T; 0 other;
     tgtccattaa ttgtttgcaa aacgaaaaaa ttcatacaaa agcgactttg ccatcatatt        60
     ttactaggaa agacactttt tttcatattt ttttttttac agcgttcttc ttatatgtat       120
     tcttaatgat actaaataaa aaaaataatg agaatagcaa cagaaacata aaaaataatt       180
     caaaacaaaa taaaaccgca aatattgact gtctattaat tgtttgcaaa atgcaaacgt       240
     tagttgaaag aagacgggaa aaaagctaac ggaacatcaa aatcaaaaac ggctggtcgc       300
     gtcttttttg ctcgtcttcc gggaattcat tcgtttaaaa agtttcttga aagcactact       360
     acttctgata aaaattacat ttttgcaatg cctggtaaac gcactgatga taatttgata       420
     caattagtgt attttaatta taacaaagga aaaaccatca aagagttagc tgaaatgttt       480
     aatattaagc ttagaactgt ttataatatt attagtcggg cagaaaaaga aaatagacta       540
     gaattaaaca tctctagagg cagaccagca aagctctctc gacgggattg ttcaaagatt       600
     ctaaagaccg tggaaaacaa tccacaaaca agcctcagag aattagttag tgacattaga       660
     ataaaccttc agaagtctgt gtgccctgag actgtgagaa aagtacttaa tttccacaga       720
     tactcatctc atatagcaag gaagaagccg ttgttgtccg ctataaatat tgaaaaacgc       780
     ttgaccttcg ctagacttaa tgttaacaat cctcttagct attggaatga tgtaattttt       840
     tgcgacgaga cgaagatcat gctatattat aatgatggcc ctggaaaagt ttggcggaaa       900
     ccaaaaacag cactccaggc caagaatata gtgcctactg ttaagtttgg gaagctttca       960
     gtcatggtgt ggggttgtat ttcttccaaa ggtgtagggc aggtgcgaat tttcaacgat      1020
     accatgacaa aagagtatta tttagacatt ttaaagaagg aattgacaga aattgcgcga      1080
     aattttggct tccttgatcc agaaaacacc agtaagctca gatacaagct gtatcaggac      1140
     aatgatccga agcacaaatc gctgctgtgt cgcacttggc tgctttataa ttgcagcaaa      1200
     gtaattgaca ccccacccca gagcccggat ctcaatccta ttgagaattt gtgagcatta      1260
     cttaagaaaa aagtggccaa acgaagtcca acttcaaaag ttgacttgat tcgttgcata      1320
     aacgaggagt ggcgcaaaat accccaatac tacgacatga atgccttaat aatgtcgatg      1380
     tcgcaacgcc tcagatgtgt aatggaagct aatggagggc ataccaaata ttaggcattt      1440
     cgataatgat cttcaaatga tacaggtctc acaatattaa tgtttgcatt ttgcaaacaa      1500
     ttaatagaca gtcaatattt gcggttttat tttgttttga attatttttt atgttcctgt      1560
     tgctattctc attatttttt ttatttagta tcattaagaa tacatataag aagaacgctg      1620
     taaaaaaaaa aaaatatgaa aaaaagtgtc tttcctagta aaatatgatg ccaaagtcgc      1680
     atttgtatga attttttcgt tttgcaaaca attaatggac atactgtata t               1731
//
ID   PARISa_DEl  repbase;    DNA;    INV; 1729 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila elegans genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1435
FT                 /product="PARISa_DEl_1p"
FT                 /translation="MPGKRVDENLIQLVYFNYYKGKPAKELAKMFNIKLRT
FT                 IYNIINRAEKENRLHLNNSGGRPKKLTRRDQSKILKKIGENPQTTLRQLAL
FT                 ELKNDCNVTVSHETVRKVLNTHKYSSHVARKKPMLSPLNIERRLNFSIANA
FT                 NQPAEYWNDVIFCDETKIMLYYHDGPSKVWRKPKTAFKQKNIIPTVKFGKL
FT                 SVMVWGCISSKGVGELRIFNDIMTKEFYLDILKNELTNSVKAFGFMNPQNR
FT                 NKLQYKLYQDNDPKHKSFLCKSWLLYNCSKVIDTPAQSSDLNPIENLWALL
FT                 KKKVAKRGPTNKKALIQAIQEEWKKIPEYYDLNVLIQSMSRRLNAVLDAKG
FT                 HHTKY"
XX
SQ   Sequence 1729 BP; 647 A; 272 C; 287 G; 523 T; 0 other;
     cagtttgtca actaattctt tgcaaaatag aaaatgtcaa taaaattaat gttgatgttt        60
     aatatttatt aacaaaaata tgatttattt catttttctt ttataatatt gtaaaggtga       120
     ttcttagcaa caattatgga tttaaaaaat ataaatttca gcataaaaca cagaaaaaaa       180
     tatcaaaaac aaaaaaatga caaattttaa tctgtcaatt aattctttgc aaaatgcaaa       240
     cacaagctaa agagaggcaa aaagccaagc aacggtaaat caaattcggg agaaataaat       300
     ttgtccgtct tggatgtgtt cttatctctt attttcatta cgtttttggt ttggacaagt       360
     gcacagttga ctgcaatttg cattattaac aatgcctggc aaacgtgttg atgaaaattt       420
     aattcaacta gtttacttta attattataa gggtaaaccg gcaaaggagt tagcaaaaat       480
     gtttaatatt aaattaagga caatatacaa cattattaat cgggcagaaa aggaaaatcg       540
     gcttcatctg aacaattctg gaggcagacc aaaaaagctc accagacgtg atcaatcaaa       600
     aattttgaaa aagattggcg aaaatccgca aactacactc aggcagttgg cattggagtt       660
     aaaaaatgat tgcaatgtaa cagtgagcca cgagactgta agaaaagtac tcaatactca       720
     caagtactca tcacacgtag caagaaagaa accaatgctc tctccgctaa acatcgaaag       780
     gcggctcaac ttttctattg ccaatgctaa ccagccggcg gagtactgga acgacgttat       840
     cttttgtgat gaaactaaga taatgttata ttatcatgat gggcccagca aagtttggag       900
     aaagccgaaa acagccttta aacaaaagaa tataatacca acagtgaagt ttggcaaact       960
     atctgtaatg gtttggggat gtatttcatc caaaggtgtt ggagagctta gaatttttaa      1020
     tgacataatg accaaagagt tttatttgga cattttaaaa aatgaactaa caaacagcgt      1080
     gaaggcgttt gggttcatga accctcaaaa ccgaaataaa cttcaataca aactgtatca      1140
     ggacaacgac cccaaacata aatcgttcct ttgcaagtcc tggctgctgt ataactgcag      1200
     caaagtgatt gacactccag ctcagagttc tgaccttaac cccatcgaaa atttgtgggc      1260
     cttgttaaag aagaaggtgg ctaaacgggg accaaccaat aaaaaagctt taatacaagc      1320
     aatccaagaa gaatggaaga aaatacctga gtactatgac ctaaatgtcc ttatacagtc      1380
     catgtctcgt cgcctaaatg cagtattaga tgccaaagga caccacacga aatattagaa      1440
     catacattgt aacatttttt aagttttggt tacgaattta accaatgttt gcattttgca      1500
     aagaattaat tgacaactga aattttgcta tttttttgtt tttattattt ttttctttgt      1560
     taaatgttga aatatataaa ttttgttatt cataattata gttaagaatc acccttacag      1620
     tattataaaa gaaaaactga aataattcgt atttttgtta ataaatatta atcttgaaaa      1680
     ttgatattat tgactttttt cattttgcaa agaattagtt gacaaactg                  1729
//
ID   PARISa_DEq  repbase;    DNA;    INV; 692 BP.
XX
AC   JQ437411;
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Paris-like element found in Drosophila equinoxialis.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DEq.
XX
OS   Drosophila equinoxialis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   EMBL/GenBank/DDBJ; JQ437411; Positions       1     692.
XX
SQ   Sequence 692 BP; 238 A; 140 C; 152 G; 162 T; 0 other;
     gccgagaaag aaaatcggct ggagttaaag cactccggag gccggccatc taagttgaca        60
     atgacgcgat cactcaaaaa ttatcaaaga ggtcagtaat aacccccaag tcagcctgag       120
     agagttagcg acaaacctta aaaatgattg ccagaagtcc gtaagccatg aaaccataag       180
     gaaggtcttc aagctgcata aacactcatc aaaaatagcg aggaagaagc cattactttc       240
     agctctaaac attgagaggc ggctgaacta ctctattgcc aatgtccaca atcccctttg       300
     agtactggga tgatgttatt ttttgcgatg agacaaaaat tatgatgtac taccatgatg       360
     gaccaagtaa agtgtggcga aagcctaaaa cagcgcttca gcaacaaaat ataattccca       420
     ctgtcaagtt tggcaaatat cggtaatggt gtggggttgc atctcatcaa gaggggttgg       480
     agaactacga atttttacgg aaataatgga taaggagttc tattgggata tcctaaaaaa       540
     cgaatttagt aaaaagtgca gcgggttttg gctttattga cccccgaaac ccaaataagc       600
     tgaagtataa gctctatcaa gacaacgacc ccaaacacaa gtcgctgtta tgcaggtcct       660
     gggctactat ataactgcag caaagtcatt ga                                     692
//
ID   PARISa_DK   repbase;    DNA;    INV; 1730 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila kikkawai genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           393..1436
FT                 /product="PARISa_DK_1p"
FT                 /translation="MPGKRVDENTIQLVYYNHYKGKSAKELSEMFNIKLRT
FT                 VYNIINRAERENRLNLNNSTGRPSKLTRRDQSKILKTIENKPQTTLRQLAE
FT                 DIKNDCGKTVSHETVRKVLNAHKYSSHVARKKPMLSAINIERRLNFSIAHI
FT                 NQPSEYWDDVIFCDETKIMLYTHDGPTKVWRKPNTAFQQKNIIPTVKFGKL
FT                 SVMVWGCISSQGVGELRIFNEIMTKEFYLDILKNELSKSANKFGFIDPQNP
FT                 NKLKYKLYQDNDPKHKSLLCRTWLLYNCSKVIDTPAQSPDLNPIENLWALL
FT                 KKKVAKRAPTNKSALIKAIQEEWEKIPQYYDLKGLINSMSRRLHAVMDAKG
FT                 LHTKY"
XX
SQ   Sequence 1730 BP; 619 A; 289 C; 304 G; 518 T; 0 other;
     cagtttgtca agaaattctt tgcaaaatga taaacgacac agaatttatt ttttaaacat        60
     gaaatttatc aacaaaaact atttttttcc ttaatttttt cttttaatat tataaaatga       120
     tgttttagct ataaatatgc ataagaaaaa ataaaatatc cttattaatc atcacaaaaa       180
     acaacaaaaa caaaataacc gcaagtattc cgttgtcaaa taattctttg caaaatgcaa       240
     acacaagtta aggggattcc cagaatatgg caacgctgca tcattttcga gaaaaatgga       300
     cgcgtgccac ttcggagtga tcttagcttt tgttttcgtg aagaagttcg tttggaaaac       360
     tttgcagttg attagagtga gcgtttttga acatgcctgg caaacgagtt gatgaaaaca       420
     caatacagtt ggtttactat aaccattata agggcaaatc ggccaaggaa ctttctgaaa       480
     tgtttaatat taaactgaga acggtttaca atataataaa tcgtgcagag cgtgaaaata       540
     gactcaattt gaacaactct acaggccgtc catcaaagct taccagacgc gaccaatcaa       600
     aaattttgaa aacgattgaa aataagccgc aaacaaccct caggcagttg gcagaagaca       660
     ttaaaaatga ttgcggtaaa actgtgagcc atgagacagt gcgaaaagtt ttaaatgcac       720
     acaagtactc atcacatgta gccagaaaga agcctatgct ttcggctata aatattgaaa       780
     ggcggcttaa tttttcgatt gcccacatta accagccttc cgagtattgg gatgatgtaa       840
     ttttttgtga cgagacgaag ataatgctct atactcatga cggacccaca aaagtttgga       900
     gaaagccaaa tacagctttc cagcaaaaga atattatacc aactgtgaaa tttggcaagc       960
     tgtctgttat ggtatggggt tgcatatcat cccaaggcgt tggagagctg cggattttta      1020
     acgaaattat gacgaaggag ttttatttgg acattcttaa aaatgaattg tcaaaaagcg      1080
     cgaacaaatt tggcttcatt gatccccaaa acccaaataa actgaaatac aagctgtacc      1140
     aggacaacga tcctaaacac aaatcgcttc tgtgcaggac atggttgctt tacaactgca      1200
     gcaaggtcat cgatactcct gcccaaagcc cggacttaaa tcctattgaa aatttgtggg      1260
     ctttgttgaa gaagaaagtg gctaaacggg ctccaacaaa taagagtgct ttaattaaag      1320
     ccattcagga ggaatgggag aaaatacctc agtattatga cctaaaaggt cttataaatt      1380
     cgatgtcgcg acgtctccat gctgttatgg atgcaaaagg actccatacc aaatattaac      1440
     caaatttgtt aaatagtttt taagttatag gtataaattc acgaagtgct cgaaaattgc      1500
     aaacaattaa ttgacaacct aataattgca atgtttatgt ttttgttata ttttactatg      1560
     ttctaagttg aaatattaaa tttttgtttc ttatattaat aactattact tatcctaaac      1620
     ataatgtgaa agaaaaatga aacattttct cgtttttgtt aataaatttt aagtttaaaa      1680
     ccaaatttta tgggaatttt tcgttttgca aagaatttct tgacaaactg                 1730
//
ID   PARISa_DMo  repbase;    DNA;    INV; 1748 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.07, Last updated, Version 2)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila mojavensis genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DMo.
XX
NM   PARISa_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           406..1455
FT                 /product="PARISa_DMo_1p"
FT                 /translation="MPGKRTDDNLIVTMIVYFNYMKGQTIKELAEMFNIKL
FT                 RTVYNIINRAEKENRLEPNSSKGRPAKLSRRDCSQILKTVENKPHTSLREL
FT                 VTDIRLNLQKTVCRETVRKVLNLHKYSSHVARKKPLLSAVNIEKRLTFARL
FT                 HIDCPPNYWNNVIFCDETKIMLFYNDGPGKVWRKPKTALHAKNIVPTVKFG
FT                 KLSVMMWGCISSKGVGELRIFDDIMTKEFYLDILKNELTKSAHNFGFINPE
FT                 NPSKLKYKLYQDNDPKHKSLLCRTWLLYNCSKVIDTPPQSPDINPIENLWA
FT                 LLKRKVAKRSPKTKNELIRCIHEEWRKIPEYYDINELILSMSRRLRGVMEA
FT                 NGGHTKY"
XX
SQ   Sequence 1748 BP; 619 A; 295 C; 314 G; 514 T; 6 other;
     dtttcardma cnscagtatg tccattaatt gtttgcaaaa caaaaaaagt cgtacaaatt        60
     taactttaac atcatatttt atcaggaaag gcactttttc tcagaatttt ttttttacat       120
     tactttagtt tcatatattc ttaaagaaaa taaataacaa aaataataaa aatagcaaca       180
     aaacatacaa aataattcaa aacaaaaaaa aaacagcaaa tatcggctgt ccattatttc       240
     tttgcaaaat gcaaacatta gttgaaagaa gacgggaaaa aactaacggg acatcaaaat       300
     taaatgcggc tcgctgggtc tattttcaca agtcttccgc gaattcattc gttataataa       360
     agtcgtggga tcactactat ttttcataaa atttgaattt tcgcaatgcc tggtaaacgc       420
     accgatgaca atttgatagt gacaatgata gtgtatttta attatatgaa aggacaaacc       480
     atcaaggagt tagctgaaat gtttaatatt aagcttagaa cagtttataa tattattaat       540
     cgggcagaaa aagaaaatag actggagcca aacagctcta aaggcagacc agcaaagctc       600
     tctcgacgag attgttctca aattcttaag acagtggaaa acaaaccaca cacaagtctc       660
     cgggagttgg tgacggacat taggttaaac cttcaaaaga cagtgtgtcg cgagactgtg       720
     agaaaagttc tcaatttaca caaatactcc tcacatgtgg caagaaagaa accgttgctg       780
     tctgctgtaa atattgaaaa acgtctgacc ttcgcaagac ttcatattga ctgtcctcct       840
     aactattgga ataatgttat cttttgcgac gagacaaaga taatgttgtt ttataatgat       900
     ggcccaggaa aagtttggcg gaaacccaaa acagccctcc acgccaaaaa cattgtgccc       960
     actgttaagt ttggcaagct atcagtgatg atgtggggtt gtatttcttc gaaaggtgtg      1020
     ggagagctga gaatattcga cgatatcatg acgaaggaat tttatttgga tattttgaag      1080
     aacgaattga caaaaagcgc gcacaacttt ggcttcatta atcctgaaaa ccccagcaaa      1140
     ctaaaatata agctgtatca ggataatgat ccgaaacaca agtcactgct gtgtcgcact      1200
     tggcttcttt ataactgcag caaagttatt gacaccccac cccaaagccc ggatatcaat      1260
     ccgattgaga atttgtgggc tttactaaag agaaaagtcg ccaaacggag ccctaagacg      1320
     aaaaacgagc taattcgttg catacacgag gagtggcgca aaataccgga atactacgac      1380
     ataaatgaac taatattgtc gatgtcgcga cgcctcagag gtgtaatgga agctaatggt      1440
     ggacatacca aatattagcc aattccatac cgatctgaga gagatacaga tctcataata      1500
     ttaatgtttg cattttgcaa agaattaatg gacagccgat atttgctgtt ttttttttgt      1560
     tttgaattat tttgtatgtt ttgttgctat ttttattatt tttgttattt attttcttta      1620
     agaatatatg aaactaaagt aatgtaaaaa aaaaattctg agaaaaagtg cctttcctga      1680
     taaaatatga tgttaaagta aaatttgtac gacttttttt gttttgcaaa caattaatgg      1740
     acatactg                                                               1748
//
ID   PARISa_DPe  repbase;    DNA;    INV; 1742 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.07, Last updated, Version 2)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila persimilis genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DPe.
XX
NM   PARISa_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1742 BP; 595 A; 290 C; 330 G; 523 T; 4 other;
     cagtatgtct attaattgtt tgcaaaatct aaaaaggcac ataagtttga cttcaacatt        60
     gaaaatatga gtaaaggcat aagttggggg aatttttttt attaactgtt atcaaaatgt       120
     gtttaagctg taggtatgac gaaaaaaaag ggcaaaattc caaggtaaag aaattaaaaa       180
     aaaacaaaaa agcggcatgt atgnctctgt ctattaattc tttgcaatat gtaaactttg       240
     aaactgattg aaagaagacg aaggaaaaac aaacgggaca tcaaaatcaa aaacgaccag       300
     acgcgtgctt ttcttaagtc ttctttgcag tcattcgttt acaaattttc ttgaattcag       360
     ttcagttact tgtgttattt gaagttttag caatgcccgg taaacgaact gaagataatc       420
     tgatacaatt ggtttatttt aattatggca aaggaaagac agctaaagag ttggccaaga       480
     tgttcaatat taagttgaga acagtctata atattattaa acgtgcggaa aaagaaaata       540
     ggctggaatt gcagacctct accgactctg cagaccaaaa aagctttctc gccgggattg       600
     ctcgaaaata tngaaaaccg tggaaaataa gccacaaaca agcctcagag agttggtcaa       660
     tgatataaaa attaatctaa acaagaccgt ttgccctgag actgtgcgaa aagttttaaa       720
     tgtccacaga tactcctcac acgtggcaag gaagaagccg ttgctgtcca cagctaatat       780
     tgagaaacgc ttaaactttg cgatatttaa tgttgacaag cctcctgagt actgggacga       840
     cgtgattttt tgtgacgaaa ccaagatcat gctgtattat aatgatgggc ctggaaaagt       900
     ttggcgtaag ccgaatacag ccctccagtc aaagaacatt gtgcccactg tgaaatttgg       960
     caagctttca gtgatgnttt ggggctgtat ttcttccaaa ggtgttggag agctgcgcat      1020
     tttcaatgac attatgacaa aagaatttta tttggacatt ttaaggaatg aattgacaaa      1080
     aagtgctcag aatgcagaat tttggcttcg ttgatccaca gaacaccagc aaacttaaat      1140
     acaagctgta ccaggacaat gatccaaagc acaaatcatt cctttgccgc acttggctac      1200
     tttacaattg caacaaagtc attgacacgc ccaccccaga gtccggatct taatcctatt      1260
     gagaatttgt gggccttgtt aaagaaaagg gtggccaaac gacgccctac ctcaaaaagt      1320
     aatttgattc tgtgtataaa cgaggagtgg ctaaaaatac ccgaatatta cgacataaat      1380
     gtcctaatat catcgatgtc gcgacgtctc agaggagtat tggatgctaa tggaggacac      1440
     acaaaatatt agccaaatag agctgcatcc tttaaagata tacatttttt aaaattactg      1500
     tttgcatttt ncaaagattt aatagacaca cgatatttgc tgtttttttt ttgtttttat      1560
     gaattgttta tgtttttgtt tctttttcat tttcttttgt tacctatttt gttaagaata      1620
     aactaaagaa aaccattgta taggactgaa catgaaaaca agtgcctttt ctaataaata      1680
     attatgatta agttgaactt gcgtgacttt tttcattttg caaacaatta atagacatac      1740
     tg                                                                     1742
//
ID   PARISa_DPol repbase;    DNA;    INV; 667 BP.
XX
AC   JQ437413;
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   24-JUN-2013 (Rel. 18.07, Last updated, Version 2)
XX
DE   Paris-like element from Tc1-mariner superfamily found in
DE   Drosophila polymorpha genome using degenerated primers.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DPol.
XX
NM   PARISa_DPo.
XX
OS   Drosophila polymorpha
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   cardini group; cardini subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   EMBL/GenBank/DDBJ; JQ437413; Positions       1     667.
XX
SQ   Sequence 667 BP; 244 A; 131 C; 142 G; 150 T; 0 other;
     gcagagaaag aaaacaggct ggaactgaag cactctggag gcagaccccc caaattaaac        60
     aaatcagcaa aaacccgcaa atcagcctta gacagttggt atcggacctg aaaactgact       120
     gcaagaaatc cgtaagccat gagactgttc ggaaagcgct aaatacgcaa aaatattcat       180
     ccaggacagc gagaaagaag ccactactat cggcactaaa tattgagacg gctgaattac       240
     gctatttggc aacataaaca atccaccgaa gtactgggac gatgttatct tctgtgatgg       300
     gacgaagaaa aattatgtat taccatgatg gaccaagtaa agtttggagg aagcctaata       360
     cagcaactgc aacaagaaaa atatagtgcc aacagtgaag tttggaaaat tatctgtcat       420
     ggtgtggggt tgtatttctt ctaagggtgt tggtgtgctc cgaattttca atgaaaatat       480
     gaacaaagag ttctacttgg acattttaaa aaatgaacta tcaagaagcg cgacaaaatt       540
     tggatttctg aacccggaaa accccaacaa atttcaatac aaattgtatc agaacaatga       600
     ccaccaagca caagtcgctc ctgtgcagga cctggttgcg tgtataattg caacaaagta       660
     atgacac                                                                 667
//
ID   PARISa_DPs  repbase;    DNA;    INV; 1727 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in the Drosophila pseudoobscura genoma.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DPs.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           392..1435
FT                 /product="PARISa_DPs_1p"
FT                 /translation="MPGKRTEDNLIQLVYFNYGKGKTAKELAKMFNIKLRT
FT                 VYNIIKRAEKENRLELQTSTGRPKKLSRRDCSKILKTVENKPQTSLRELVN
FT                 DIKINLNKTVCPETVRKVLNVHRYSSHVARKKPLLSTANIEKRLNFAIFNV
FT                 DKPLEYWDDVIFCDETKIMLYYNDGPGKVWRKPNTALQSKNIVPTVKFGKL
FT                 SVMVWGCISSKGVGELRIFNDIMTKEFYLDILKNELTKSAQNFGFVDPQNT
FT                 SKLKYKLYQDNDPKHKSFLCRTWLLYNCNKVIDTPPQSPDLNPIENLWALL
FT                 KKRVAKRRPTSKSNLIQCINEEWLKIPEYYDINVLISSMSRRLRGVLDANG
FT                 GHTKY"
XX
SQ   Sequence 1727 BP; 586 A; 294 C; 333 G; 513 T; 1 other;
     cagtatgtct attaattgtt tgcaaaatgt aaaaaggcac ataagtttga cttcaacatt        60
     gaaaatatga gtaaaggcat aagttggggg aatttttttt attaactgtt atcaanatgt       120
     gtttaagctg taggtatgac gaaaaaaagg gcaaaattcc aagaaaaacg gtaaagaaat       180
     taaaaaaaac aaaaaagcgg catgtatgac tctgtctatt aattctttgc aatatgtaaa       240
     cactgattga aagaagacga aggaaaaaca aacgggacat caaaatcaaa aacgaccaga       300
     cgcgtgcttt tcttaagtct tctttgcagt cattcgttta caaattttct tgcattcagt       360
     tcagtttctt gtgttatttg aagttttagc aatgcccggt aaacgaacag aagataatct       420
     gatacaattg gtatatttta attatggcaa aggaaagaca gctaaagagt tggccaagat       480
     gttcaatatt aagttgagaa cagtctataa tattattaaa cgtgcggaaa aagaaaatag       540
     gctggaattg cagacctcta ccggcagacc aaaaaagctt tctcggcggg attgctcgaa       600
     aatattgaaa accgtggaaa ataagccaca aacaagcctc agagagttgg tcaatgatat       660
     aaaaattaat ctaaacaaga ccgtttgccc tgagactgtg cgaaaagttt taaatgtcca       720
     cagatactcc tcacacgtgg caaggaagaa gccgttgctg tccacagcta atattgagaa       780
     acgcttaaac tttgcgatat ttaatgttga caagcctctc gagtactggg acgacgtgat       840
     tttttgtgac gaaaccaaga tcatgctgta ttataatgat gggcctggaa aagtttggcg       900
     taagccgaat acagccctcc agtcgaagaa cattgtgccc actgtgaaat ttggcaagct       960
     ttcagtgatg gtttggggct gtatttcttc caaaggtgtt ggagagctgc gcattttcaa      1020
     tgacattatg accaaagaat tttatttgga cattttaaag aatgaattga caaaaagtgc      1080
     gcagaatttt ggcttcgttg atccacagaa caccagcaaa cttaaataca agctgtacca      1140
     ggacaatgat ccaaagcaca aatcattcct ttgccgcact tggctacttt acaattgcaa      1200
     caaagtcatt gacacgcccc cccagagtcc ggatcttaat cctattgaga atttgtgggc      1260
     cttgttaaag aaaagggtgg ccaaacgacg ccccacctca aaaagtaatt tgattcagtg      1320
     tataaacgag gagtggctaa aaatacccga atattacgac ataaatgtcc taatatcatc      1380
     gatgtcgcga cgtctcagag gagtattgga tgctaatgga ggacacacaa aatattagcc      1440
     acatagagct gcatccttta aagatatcca tttgtgaaaa ttactgtttg cattttgcaa      1500
     agatttaata gacacacgat atttgctgtt tttttttgtt tttatgaatt gtttatgttt      1560
     ttgtttcttt ttcattttct tttgttacct attttgttaa gaatacacta aagaaaacca      1620
     ttgtatatga ctgaacatga aaacaagtgc cttttctaat aaataattat gtttaagttg      1680
     aacttccgtg acttttttca ttttgcaaac cattaataga catactg                    1727
//
ID   PARISa_DRh  repbase;    DNA;    INV; 1031 BP.
XX
AC   .
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Consensus of Paris-like elements, that presented less than 9% of
DE   divergence, found in Drosophila rhopaloa genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1028
FT                 /product="PARISa_DRh_1p"
FT                 /translation="MPGKRTDANLIQLVYYNLSKGKTVKELANMYNIKLRT
FT                 VYNIKNRAEKECRLELHSSNGRPKKLSRRDCAKLLKTIKNKPQRSLRRIAS
FT                 DNKTVSHETVRKVKNRHMYLPHVARTKPFLTAVDTENRLRFGLLNSNKSPE
FT                 YWKDVIFCDETKIMMYYHDGAAKNWKPNTAHQANNIVPKVKIGKLSVMVWG
FT                 CISSKGVGELRIFNDIMTKEFYLDILQIELTRSAQKFGFVDPENRSKLKYK
FT                 LYQSDNPEHKSHDSRSWTLYNCRKVIDTPAQSPDLNPIENLWALLKKKVAK
FT                 RRPTSKPALIKCINEEWQKIPDYYDVNKLISSMPRRLRAVVEANGGHGKY"
XX
SQ   Sequence 1031 BP; 378 A; 195 C; 209 G; 249 T; 0 other;
     caatgcctgg aaaacgcact gacgctaact tgattcagtt agtttattat aatttatcga        60
     aaggaaaaac agtaaaagag ttggctaata tgtataatat taaactcaga accgtttata       120
     atattaaaaa ccgagcggaa aaagaatgca ggctggaatt acatagctca aatggcagac       180
     ccaaaaaact atctcgacga gactgtgcaa aattattaaa aacaattaaa aataaaccgc       240
     aaagaagcct tcgaagaata gcaagtgata ataaaactgt aagccatgag acagtgcgaa       300
     aggtaaaaaa tcgccacatg tatttgccac atgtggcaag aacgaaaccc ttcctgactg       360
     ctgtcgatac tgaaaaccgt ttgagatttg gattattgaa ttctaataaa tcgccggagt       420
     actggaagga cgtaattttt tgtgacgaga ccaaaataat gatgtattat catgacggag       480
     cagcaaaaaa ttggaaacca aatacagccc accaggcgaa caatattgtg ccaaaagtca       540
     aaattgggaa actttcagtt atggtgtggg gttgtatatc atccaaaggc gttggagagc       600
     tgcgtatatt taacgatata atgaccaagg aattctattt agacatttta caaattgaat       660
     tgaccagaag cgcccaaaaa tttggcttcg ttgatcccga aaacagaagt aaactcaaat       720
     acaagctgta ccagagcgat aacccggagc acaaatccca tgactcccgc tcctggacac       780
     tttataactg cagaaaagtt attgacacgc ccgcccagag tccggatcta aatcctatcg       840
     aaaatttgtg ggcattactt aagaaaaagg tagcaaaacg ccgccccact tctaagcctg       900
     ccttaataaa gtgtattaat gaagagtggc agaaaatacc tgattattac gatgtaaaca       960
     aattaatttc gtcgatgccc cgtcgcctca gagcagtagt ggaggctaat ggcgggcatg      1020
     gtaaatatta g                                                           1031
//
ID   PARISa_DSu  repbase;    DNA;    INV; 683 BP.
XX
AC   JQ437412;
XX
DT   06-MAY-2012 (Rel. 17.06, Created)
DT   07-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Paris-like element found in Drosophila sucinea.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; PARISa_DSu.
XX
OS   Drosophila sucinea
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; bocainensis subgroup.
XX
RN   [1]
RA   Wallau G.L., Kaminski V.L. and Loreto E.L.;
RT   "The role of vertical and horizontal transfer in the evolution of
RT   Paris-like elements in drosophilid species.";
RL   Genetica 139(11-12), 1487-1497 (2011).
XX
DR   EMBL/GenBank/DDBJ; JQ437412; Positions       1     683.
XX
SQ   Sequence 683 BP; 236 A; 124 C; 146 G; 177 T; 0 other;
     gccgagaaag aaaaccggct ggaattacac agttctaaag gcagaccagc aaagctctct        60
     cgacgcaatt gttcaaaaat tttaaaaata gttgaaaaca atccgcaaac aagcctcaga       120
     gagttggttg atgacataaa agtaaactta aagaggactg tgtgccctga gactgtgaga       180
     aagttccaca aatactcatc ccatgtagca ggaagaagcc gttgttgtca gctgtaaata       240
     tcgaaagacg tttgagcttc gctatttcta atattaacaa tccagttgag tattggaacg       300
     atgtcatttt ttgcgacgag acgaagatca tgttatacta taatgatggc cctgaaaaag       360
     tttggcgaaa accaaaaaca gccctccagg ccaaaaacat tgtgcctaca gtgaaatttg       420
     gcaagctatc agtaatggtg tggagatgta tttcatccaa aggtgttgga gagctgcgta       480
     tttttaatga tataatgacc aaggagtttt atttggacat attaaaaaat gagttgacga       540
     aaaagtgcgc acaattttgg cttcgtttgt ccggaaaaca acagaatact taaatacaag       600
     ctgtaccagg acaatgatcc gaagcacaaa tcgttgctat gtagcacttg gctgctttat       660
     aactgcagca aagtcattga cac                                               683
//
ID   pBuM-Alpha2 repbase;    DNA;    INV; 193 BP.
XX
AC   .
XX
DT   20-OCT-2015 (Rel. 21.03, Created)
DT   20-OCT-2015 (Rel. 21.03, Last updated, Version 1)
XX
DE   pBuM satellite DNA family (alpha 2 variant).
XX
KW   Satellite; Simple Repeat; satellite DNA; Heterochromatin;
KW   Drosophila; buzzatii cluster; centromere; concerted evolution;
KW   pBuM-Alpha2.
XX
OS   Drosophila serido
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-193
RA   Kuhn G.C.S.;
RT   "Sequence analysis, chromosomal distribution and long-range
RT   organization show that rapid turnover of new and old pBuM
RT   satellite DNA repeats leads to different patterns of variation in
RT   seven species of the Drosophila buzzatii cluster.";
RL   Chromosome research 16(2), 307-324 (2008).
XX
DR   [1] (Consensus)
XX
CC   pBuM-1 subfamily, composed of "alpha" monomers aproximatelly
CC   189bp long. The sequence deposited here belongs to the "alpha 2"
CC   variant.
XX
SQ   Sequence 193 BP; 63 A; 36 C; 35 G; 59 T; 0 other;
     tactgttgca aaaagcggcc tgagcgaaaa aaaaaattga cttttttcga ggtataacaa        60
     gctataagcg gagtattttt cattcgactt ctttatggca taccatttca gaagcgtcct       120
     ttatcggaga actcagatat atctaaggat ctggcatggt ctaagaactt tccgaaatat       180
     tcacataatt cca                                                          193
//
ID   pBuM-Alpha2Beta repbase;    DNA;    INV; 370 BP.
XX
AC   .
XX
DT   20-OCT-2015 (Rel. 21.03, Created)
DT   20-OCT-2015 (Rel. 21.03, Last updated, Version 1)
XX
DE   pBuM satellite DNA family (alpha 2/beta variant).
XX
KW   SAT; Satellite; Simple Repeat; pBuM-Alpha2Beta.
XX
OS   Drosophila serido
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-370
RA   Kuhn G.C.S.;
RT   "Sequence analysis, chromosomal distribution and long-range
RT   organization show that rapid turnover of new and old pBuM
RT   satellite DNA repeats leads to different patterns of variation in
RT   seven species of the Drosophila buzzatii cluster.";
RL   Chromosome research 16(2), 307-324 (2008).
XX
DR   [1] (Consensus)
XX
CC   pBuM-2 subfamily, composed of "alpha/beta" monomers of
CC   approximatelly 370bp formed by an alpha2 variant (190bp) plus a
CC   "beta" sequence (180bp) of unkonwn origin. Found in some species
CC   from the Drosophila buzzatii cluster. Heterochromatic location.
XX
SQ   Sequence 370 BP; 118 A; 69 C; 54 G; 129 T; 0 other;
     tactgtcgca aaaagcggcc tgtgcgaaaa aaattgaata ttttcgaggt ttaacaagct        60
     ataaccggag tatttttcat tcgacttctt tatggcatac cattttagaa gcgtccttta       120
     tcggagaact cagatatatc taaggatctg gcatggtcta agaactttcc gaaatattca       180
     cataattcca taaaaatatg accaattgaa ctttaaatgg ctctagctag gttatccttt       240
     gtccgatttt aagctcaact atactttttg aatcgacata gacagttctt ttgatataaa       300
     cacaaacatt tttttcgaaa aaattttcat ttttgccatt ttaaccatct taggtaacgt       360
     aaaccctctt                                                              370
//
ID   PEGASUS     repbase;    DNA;    INV; 534 BP.
XX
AC   U47019;
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   21-AUG-1997 (Rel. 2.07, Last updated, Version 1)
XX
DE   Putative HAT-like non-autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT superfamily; Pegasus; TIR; nonautonomous DNA transposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-534
RA   Besansky J.N., Bedell A.J., Benedict Q.M., Mukabayire O.,
RA   Hilfiker D. and Collins H.F.;
RT   "Cloning and characterization of the white gene from Anopheles
RT   gambiae.";
RL   Insect Mol. Biol 4, 217-231 (1995).
XX
RN   [2]
RP   1-534
RA   Besansky J.N., Mukabayire O., Bedell A.J. and Lusz H.;
RT   "Pegasus, a small inverted repeat transposable element found in
RT   the white gene of Anopheles gambiae.";
RL   Genetica 98, 119-129 (1996).
XX
RN   [3]
RP   1-534
RA   Besansky J.N.;
RT   "PEGASUS.";
RL   Direct Submission to Genbank (24-JAN-1996)Nora J. Besansky,
RL   Centers for Disease Control, Division of Parasitic Diseases, 4770
RL   Buford Highway, Chamblee, GA 30341, USA.
XX
DR   GenBank; U47019; Positions      78     611.
XX
CC   8 bp target-site duplication; 8 bp TIRs.
XX
SQ   Sequence 534 BP; 166 A; 98 C; 92 G; 178 T; 0 other;
     cagtgttgcg aacggtgata gtcgtcgaca taaaattttt caaaatgata ctttttgaag        60
     catcgcattc tagatccacg cattcattcg acaatcacgg aaaaaaatat catttgacat       120
     gatgatattt tttctgctac aatcatttga ctttttgatt ttgccgtacc tcaagtgaac       180
     tagatcttca tcgaaaatgg gtcctttttt cgtgttttcg cgtgaatttc tatactcctg       240
     taagagaata ccattttcct ggttcactga gtgaaaatat caagtggtct aatggcttag       300
     tatcggtaaa cgcacgatta agcagttctg gattctcact gaaaaatgtc aaatggcatt       360
     cattctacat tttttgcaat catgtcatcg caaaagcatt gattgttaat gcacaaatga       420
     ttgtcgcttt tggaaagtcg tgtcatggta accatgaata tcatgatcaa aaaatgattt       480
     tgacacccgc ttactgcgaa tatcataaaa aaatgtcgac aattaacaac actg             534
//
ID   PegasusA    repbase;    DNA;    INV; 3696 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   PegasusA is a hAT-like autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   Autonomous DNA transposon; MITE; Pegasus; PegasusA;
KW   hAT superfamily; transposase.
XX
NM   PegasusA.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-159
RA   Besansky J.N., Mukabayire O., Bedell A.J. and Lusz H.;
RT   "Pegasus, a small inverted repeat transposable element found in
RT   the white gene of Anopheles gambiae.";
RL   Genetica 98, 119-129 (1996).
XX
RN   [2]
RP   1-3696
RA   Kapitonov V.V. and Jurka J.;
RT   "PegasusA: a family of autonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(5), 97-97 (2003).
XX
DR   [2] (Consensus)
XX
CC   PegasusA is a family of autonomous DNA transposons that belongs
CC   to the hAT superfamily. The PegasusA consensus sequence was
CC   built from 4 copies ~3% diverged from it. PegasusA encodes the
CC   499-aa PegasusAp hAT-like transposase.
CC   Nonautonomous derivate of PegasusA was described as PEGASUS [1].
CC   PegasusA is flanked by imperfect 16-bp terminal inverted repeats
CC   (4 mismatches).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(312..602,1346..2053,2317..2817)
FT                 /product="PegasusAp"
FT                 /note="hAT-like transposase"
FT                 /translation="MSKTSGEKRKLREIIAEGCVGFENGHFVCTIDEVNGC
FT                 KYRQKNEKYEPGNFIRHIRSMHPDLAKSRGLLQEDGEVPIKKRKVSKVPVA
FT                 IDRQKLLEGGRPQENCSLPNHYLDLTEAIEKEFYQYITLVRCAVHTMQLSV
FT                 VDVVKTFDGEIRKCTAVSNNCRKIMYKTVFNNESLPPLYSKTRWGGIFEML
FT                 NHFFKQEDFFNELGQQHSELGEIYYINEKVFPYLNISFFSDLTEQWDFIKE
FT                 YVVAFVPVYISTKAMQAKHTSLNDFYLSWMKTILKVGSIPGNRFVEPLTKA
FT                 LKNRLKNLKESIVFKAALLLDPRFNYLNSKFFNQEEKEEIRSFIISTSERI
FT                 HLCKAKVQPSSSSSPSNAPNGTLNSSSDFDLYFTELYGGSLPEQNAEEIQT
FT                 SANKILRQLISLDAEAHQNSHFDVWNFWLMRKSTHPELYEVATLLLSVPSN
FT                 QVSVERAFSALGLVLSDKRTRMNDDTLENILLIKLNQPLLEKILPDLYEWN
FT                 KEDI"
XX
SQ   Sequence 3696 BP; 1274 A; 635 C; 645 G; 1141 T; 1 other;
     cagtgttgcg aacggtgata gtcgtcgaca caaaatttta caaaatgata ctttttgaag        60
     cagcgcattc tagatacacg ctttcgttcg acaatcatgg aaaaaaatat catttgacac       120
     gatgatattt ttttgtagta ttcatttgat tgtgattttc ccgggataca agcaacttag       180
     gtcatgttga acgcagttgg ctttgcgttt gtcgtcctaa aatcagtggc gttagtgaac       240
     agaacaagct tattctgagt gaaacaagga agtaaagaaa cacattccaa ttctaatatt       300
     cttaaataaa aatgtcaaaa acatcaggag aaaagcggaa actccgtgaa attatagcag       360
     aaggttgtgt tggtttcgaa aatggacact tcgtttgtac tatcgacgaa gtaaatggtt       420
     gtaaatatag gcaaaagaat gaaaaatatg agccgggtaa ttttatacgc catatacgat       480
     cgatgcaccc agatttggca aaatcccgag gattgctgca agaggacggt gaagtcccca       540
     taaagaagag gaaagtttcc aaagttccgg tagccattga ccggcaaaag ctcctggaag       600
     gtatttaata tatttaattt ttttttctgt ggcgattacg tcaaataata tttactcaag       660
     ctttattaat aacaataagt attaactaaa tgttatttaa atattaaacg ctctctaaat       720
     tgtcgtttct aaaggtatga tgaagctaat atgttgccat aacgtaccta tgatgttcgt       780
     cgaatgggac ggcttagggt agatcctgaa acctatttgt gatgcgttga agatgaacct       840
     caaccgtgct aatattgttt gtcatcttgg agctgctgct cgaaaaattc gccaggaact       900
     taccacaatt ttgaaaggaa aattcttatg cttgaaaatt gactgcgcaa ctcgtcttgg       960
     acgccacata ttggggatca acatccaata ttattgtgaa ctacaaaagg atgtcatcat      1020
     ttatacaatt ggtaataatc ctcattctca agttaatctt tttaaaaaca cgcatgcgat      1080
     ttgcagcgag tttcatgttt tacctatcgt gaaagtattg atgaagtatg aataactctt      1140
     tgtttaaatt aaattcaata ggaatggttg agctgaataa tagacacacc ggaaaatttt      1200
     tgaaaacaaa gatcctagaa atactcactc aatacgaaat ttcattggaa caaattttca      1260
     cggtcacctg tgataatggt gcgaacatga tcgctgccgt taagcatctt caatcagatg      1320
     cccaggtcat gttcaaccca ctwgaggacg cccacaagaa aactgttcac ttccgaatca      1380
     ttatttagat ttgacagaag ccattgaaaa agaattttac cagtatatca ctcttgtaag      1440
     atgtgccgtt cataccatgc agctttcggt agtagatgtg gtcaagacat tcgatggaga      1500
     gattcgtaaa tgtactgcag tatcaaataa ctgccggaaa attatgtaca agactgtttt      1560
     taacaatgaa tctctcccac cgctctactc aaaaaccaga tggggaggaa ttttcgaaat      1620
     gttgaaccat ttttttaaac aggaggattt cttcaacgaa ctgggtcagc agcattcgga      1680
     attaggtgag atttattata taaacgaaaa agtttttcca tacctcaaca tttcattttt      1740
     ttcagattta acagaacaat gggattttat aaaagaatat gtagtggcgt ttgtgcctgt      1800
     ctatatttca acaaaagcca tgcaagccaa acatacatca ctgaacgatt tttatttatc      1860
     ctggatgaag accattttga aagtcggttc aattccagga aatcgtttcg ttgaaccgct      1920
     tacaaaagcc cttaaaaatc ggttaaaaaa tcttaaagaa agtattgttt ttaaggccgc      1980
     gcttctactt gacccaagat tcaattattt gaactctaaa ttttttaatc aagaagaaaa      2040
     agaagaaatt cgcgtgagta acatatttca gacttcattc taatttctat attctacatt      2100
     acataaaaca atattttaat tacaattact taatgttgcc agcttagcct ttaaaaaata      2160
     tgtttgtgac acaaattaaa gcagtacaaa tcgagttgtc ttatgcgtta ggcaataagt      2220
     tgatacgtgt gacgtggatc caagatgacc acaaataact caatatttaa attaattttg      2280
     tttccatatt aaaatgatat ttacgtataa ttatagagct tcatcatctc tacatcggaa      2340
     cgcatccatc tatgtaaagc taaggttcaa ccatcttcat catcatcacc atctaatgct      2400
     ccgaatggga cactaaatag ctccagtgat tttgatttgt attttactga actttacgga      2460
     ggatcattgc cagaacaaaa tgctgaagaa atacaaacga gcgcgaacaa gattctacgg      2520
     cagctgatat cattggacgc agaagcccat caaaactcgc attttgatgt ttggaatttt      2580
     tggttaatgc gaaaatccac tcatcctgaa ctatatgaag tagcgacatt acttttgtca      2640
     gtaccatcaa accaggtatc tgtggagcgt gcttttagcg cacttggttt ggttttatct      2700
     gataaacgga ccagaatgaa cgatgatacg ttggaaaaca ttttactgat caagctgaac      2760
     cagcccttgc ttgaaaaaat tctacctgat ttatatgaat ggaataagga agatatttaa      2820
     ttactttaag ggggttttaa ttggggttta atattgttac acctaatata atgaaaaaat      2880
     ataacagtat aagtataaca ataataaaat aaataaaacc attttttaat tgaattggcc      2940
     tttgttacat aagaatttca ttctgcagga aatctttttc aatatcggca tcataaaata      3000
     aaaatataac gaaccctcct agaacatttt ttttaaccgg caagtccaaa aaatgcaaat      3060
     gtaagcttaa actcacgcta acattcaatt acaactcaca tatattttaa caaaccacat      3120
     tgagacattt caaagataaa aaagaaaaat cagaaagggg tgaaaaactc agagttgaaa      3180
     aaccttcaaa aactcttcca tgtattcttt ttttatacgg ggccatggtg gcagggaatc      3240
     ttggaagtgg gtgctgtttg tgttagccaa taaactacca agcagtttta taagcaacat      3300
     ttcgtggatt tctgtaccca agttccttaa aattccactc aataaattgt tttgtaatgc      3360
     ctgaaaaatg taccaatctg taaaattaat gaaattgatg ctatgttaaa agcgtacact      3420
     gggaaagtta aaatataaaa tttttaaaat tttatgtgaa cacctacagc cgacatcaca      3480
     tttcagcgat ttgtatcgag caaaaaaatg tcaaatgaca ttcattctac tctttttgca      3540
     atcatgtcat cgcaaaagca ttgattgtta ttgcacaaat gattgtcgct cttggaaagt      3600
     cgtgtcatgg taaccatgaa tatcatgatc aaaaaatgat tttgacagcc gcttactgcg      3660
     aatatcataa aaaaatgtcg acaattaaca acactg                                3696
//
ID   PEN1        repbase;    DNA;    INV; 465 BP.
XX
AC   M15766;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.melanogaster pen repeat mRNA.
XX
KW   PEN1; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-465
RA   Haynes R.S., Rebbert L.M., Mozer A.B., Forquignon F.
RA   and Dawid B.I.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein.";
RL   Proc. Natl. Acad. Sci. U.S.A 84(7), 1819-1823 (1987).
XX
DR   GenBank; M15766; Positions     776    1240.
XX
SQ   Sequence 465 BP; 122 A; 103 C; 174 G; 66 T; 0 other;
     ggaggtggcg gaggacgcgg tggtccggga ggtcgtgccg gtggaaaccg cggaaacatg        60
     ggcggtggaa actacggcaa ccagaatggt ggcggcaact ggaacaacgg tggcaacaac       120
     tggggcaaca accgcggggg taacgacaac tggggcaaca acagcttcgg tggtggcggc       180
     ggcggcggtg gtggctatgg cggtggcaac aacagctggg gcaataacaa tccgtgggac       240
     aatggcaatg gaggcggcaa ctttggaggc ggcggcaaca attggaacaa tggtggcaat       300
     gattttggag gctaccagca gaactatggc ggcggtccgc agcgaggtgg cggcaacttc       360
     aacaacaatc gcatgcaacc ctaccaagga ggtggtggat tcaaagcagg cggtggcaat       420
     caaggcaact atggcggaaa caatcagggc ttcaataacg gtggc                       465
//
ID   PEN2        repbase;    DNA;    INV; 213 BP.
XX
AC   M15765;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.melanogaster pen repeats mRNA.
XX
KW   PEN2; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-213
RA   Haynes R.S.;
RT   "Direct submission.";
RL   Unpublished (1987) NIH, Bldg 6, Room 307, Bethesda MD 20892.
XX
RN   [2]
RP   1-213
RA   Haynes R.S., Rebbert L.M., Mozer A.B., Forquignon F.
RA   and Dawid B.I.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein.";
RL   Proc. Natl. Acad. Sci. U.S.A 84(7), 1819-1823 (1987).
XX
DR   GenBank; M15765; Positions     830    1042.
XX
SQ   Sequence 213 BP; 38 A; 46 C; 100 G; 29 T; 0 other;
     gaggtggtgg aggcggcggc tacggcggcg gtggtggcgg aggaggctac gaccgaggaa        60
     atgatcgtgg atccggcggc ggtggatatc acaacagaga tcgcggtggc aactcgcagg       120
     gaggcggagg cggcggcggc ggtggtggtg gctactcccg cttcaatgac aacaatggcg       180
     gaggacgcgg tggccgtgga ggtggtggcg gca                                    213
//
ID   PEN4        repbase;    DNA;    INV; 150 BP.
XX
AC   M15763;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.melanogaster pen repeat.
XX
KW   PEN4; Repetitive sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-150
RA   Haynes R.S., Rebbert L.M., Mozer A.B., Forquignon F.
RA   and Dawid B.I.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein.";
RL   Proc. Natl. Acad. Sci. U.S.A 84(7), 1819-1823 (1987).
XX
DR   GenBank; M15763; Positions       1     150.
XX
SQ   Sequence 150 BP; 21 A; 36 C; 73 G; 20 T; 0 other;
     ggcggacgtg gcgcaaaggg cagcggagcc ggcggcgttg gtgccagcaa taatgccgct        60
     gcgggcaatg cggctggtgg cgcagcggga gctgcagcgg gcgctggatc tgttggaggt       120
     gttggcggtg caggagcagc gggcggcggc                                        150
//
ID   PENEL1_NVi  repbase;    DNA;    INV; 3197 BP.
XX
AC   .
XX
DT   13-NOV-2007 (Rel. 12.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type element: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; PENEL1_NVi.
XX
NM   PENEL1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3197
RA   Jurka J.;
RT   "Penel1_NVi: Penelope-type element from Nasonia parasitic wasp.";
RL   Repbase Reports 7(11), 1176-1176 (2007).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1064..2719
FT                 /product="PENEL1_NVi_1p"
FT                 /translation="MFTLADKGNVTVAMLRSDYIEKMELQLSDRNTYTEIA
FT                 KNPLSKIQNKVKKFMNNWNTNGFFGKKYSKFKFTQTDTTLPKCYGLPKIHK
FT                 KDIALRPIISTIGSPTYFLSKSLLKILQNSIKKPDSYVENSYDFIEKIKNV
FT                 VVPPNHRLISLDVKSLYTNIDKSLVKKSIEKRYIQIVQKSEIPLNEILLAC
FT                 ELLMENTFFQFNGKFYKQLFGTPMGSPISGFFADIVMDDLETDCLSKLSFK
FT                 PTFFYRYVDDIITCVPNDKVDEILKTFNSYNNRLQFTHETEIDNSISFLDV
FT                 LLIKDNDKIVTDWYTKPTFSGRFLNYTSQHPMSQKIAMVYNLVDRAIKLSN
FT                 KKFHNKNIQNIKKLLHENHYPPAFVNKYIRKRMSTLTSNTLSRQQISSNEK
FT                 RNIVSLPYIQGFYEQTSHAFKTLNIETVPKINSQMKNIIIKGKDKKDKDLE
FT                 NNVVYKLECNDCSATYVGQTKRNVCIRINEHKKSKNTVISDHVNNLNHTFN
FT                 FENYHIKDREINLNKRLVSEMLHIHLQENGINKKEDTQNLNTVYTHLIHQL
FT                 KTKQT"
XX
SQ   Sequence 3197 BP; 1239 A; 666 C; 454 G; 838 T; 0 other;
     gtgccttctc gacaaaactt tgtaccgatc ttctccataa ttgtcagttc ttcacactgt        60
     acatatgttg ttatacaaca agtttttaat aaatttttcc acatcagtct cctgatgagg       120
     gcggcattgt ccgtcgaaac gtcgagaaga aaagagaaaa tgtcttaagt tttttctctc       180
     ctttctcacc acacaacctg ccccgggaag accgatagag acaaaccaat atttttgatc       240
     accaccgagg gacagcatca gatagagaaa aggtttttct ctaaatatat ttttgttatc       300
     cgacaccggt ctcatccacg actccttctt caacaacatc gagaggaatt agaatcgact       360
     ctcgacatct tttgaagatt tcctacaaca gaacttgaca agcgccagat cacaacgact       420
     tctttcggta cagaacgcac gacaagccta caaacgtcac caacatcgca agtaacctaa       480
     gccattttaa ttttcgcagc aattcgggta gatgtaaatt caacaattat ctcaaatttc       540
     caaagcaaaa tcctgaatta gaaatcagat ctctatacac atgaattttt taaaacttaa       600
     atccgaaaaa ttaaaagaac atttacaaga aataatacca cataacgtca tcagtatttt       660
     cgaagatttg aataatgatc acggcgacaa acttaacaaa attaaaaaat tttctaagca       720
     ttaacgacaa atacgaactc cgaatcgaat tgcgaaaaat ggtttcaaaa tctcatcgat       780
     atagacatat caaccgatct ataatttgta acgtcactag gacaaaaatt taatccaaaa       840
     agtgaacttg atgacacaaa aacaatcgaa tgtataaaaa acatagaaaa cttgattact       900
     tacaataact tatcggataa aaccgccaat gacatacgaa atatactgat caaaaaaatc       960
     acacaacaca gacacaaaac taaacacata aaaatagaag aaacaatttt taagaaaaaa      1020
     ttacaagaca ctaaagattt tattaaaaat aacaaaaaac atcatgttca ctttagccga      1080
     caaaggaaat gtgaccgttg cgatgctgag atctgattac atcgaaaaaa tggaactaca      1140
     attgtcagac agaaatacat acactgaaat agcgaaaaat ccattatcaa aaatccagaa      1200
     caaagttaaa aaattcatga acaattggaa cactaacggc tttttcggaa aaaaatacag      1260
     taaattcaaa ttcacacaaa cagacaccac cttgccaaaa tgttatggac tacctaaaat      1320
     tcacaaaaaa gatatcgctt tacgacctat tatctcaaca ataggctcac ctacgtattt      1380
     tttatcgaaa agccttctta aaatattaca aaatagcatt aaaaaacctg actcatacgt      1440
     agaaaacagc tatgatttca tagaaaaaat taaaaatgtt gtagtcccac cgaaccaccg      1500
     cttaatcagc ctcgatgtaa aatcactcta taccaacatt gacaaatcat tagtcaagaa      1560
     gagcatcgaa aaaagatata tacaaattgt acaaaaatct gaaatacctc tcaatgaaat      1620
     cttgttggct tgtgaattac ttatggagaa tacgtttttt caattcaatg gcaaatttta      1680
     taaacagcta tttggcacac caatgggctc tccgatctcg ggtttctttg ctgacattgt      1740
     catggatgat ctcgaaacgg attgcctatc taaactatcg ttcaaaccaa cattctttta      1800
     tcgatatgtc gacgacatta ttacatgtgt gccgaatgac aaagtcgacg aaattttaaa      1860
     aacattcaat tcttacaaca atagattaca atttactcac gagactgaga tcgataactc      1920
     cataagtttt ctagatgttc tattgattaa agacaatgat aaaatagtaa ctgattggta      1980
     caccaaaccg accttctctg gcagattttt aaattacaca tcacaacatc ctatgtctca      2040
     aaaaatcgcc atggtgtaca atcttgtcga tagagcgata aaattatcca acaagaaatt      2100
     tcacaataag aacattcaaa acatcaaaaa attactgcat gaaaatcatt atccacccgc      2160
     cttcgttaac aaatatatac gaaaaagaat gtcaacgtta acatcaaaca cattgtcaag      2220
     gcaacagatt agcagtaatg aaaaacgcaa tattgtaagc ctaccctata ttcaaggttt      2280
     ttacgagcag accagtcatg cattcaagac tctcaacatc gaaactgtac cgaaaataaa      2340
     tagccaaatg aaaaacatca ttataaaagg caaagacaag aaagataaag atctagaaaa      2400
     caacgttgtc tataaacttg aatgtaatga ttgctctgcc acgtatgtag gccaaacaaa      2460
     aaggaatgtg tgtatacgta taaatgaaca caaaaaatcg aaaaatactg taatctccga      2520
     tcacgtcaac aatctgaatc acactttcaa ttttgaaaac taccacatta aagacagaga      2580
     gatcaattta aataaaagac tagtttccga aatgctacac atacacctac aagaaaacgg      2640
     tattaataag aaggaagaca ctcaaaattt aaatacagta tacacacacc ttatacacca      2700
     gctgaaaaca aaacaaacat aagccaggct ctgacgtcaa tagcggaaga aattgtcaac      2760
     acggccgctc gactctcttc tcactgctcc gcgctatata aacacgacga aaatctcgac      2820
     tcgcgcgaat tagaatcgaa cagctgagag agaaacactg ttcacctacg ttccccccgc      2880
     cgcgcggcgg ggaagcgcct tctcgacaaa actttgtacc gatcttctcc ataattgtaa      2940
     gttctattct cacactgtac atatattgtt atacaacaag tttttaataa attttttcac      3000
     atcagtctcc tgatgagggc ggcattgtcc gtcgaaacgt tgagaagaaa agagaaaatg      3060
     tcttaaagtt ttttctctcc tttctcacca cacaacctgc ctcgggaaga ccgatagaga      3120
     cgaaccaata ttcttgatca ccaccgaggg acagcatcag atagagaaaa accttttctc      3180
     taaatatatt ttttttt                                                     3197
//
ID   PENELOPE    repbase;    DNA;    INV; 2780 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 2.00, Created)
DT   08-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Drosophila virilis Penelope transposable element.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; transposon; LINE.
XX
NM   PENELOPE.
XX
OS   virilis group
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2773
RA   Evgen'ev B.M., Zelentsova H., Shostak N., Kozitsina M.,
RA   Barskyi V., Lankenau H.D. and Corces G.V.;
RT   "Mobilization of multiple transposable elements during hybrid
RT   dysgenesis in Drosophila virilis.";
RL   Unpublished.
XX
RN   [2]
RP   1-2773
RA   Evgen'ev B.M., Zelentsova H., Shostak N., Kozitsina M.,
RA   Barskyi V., Lankenau H.D. and Corces G.V.;
RT   "PENELOPE.";
RL   Direct Submission to Genbank (13-FEB-1996)M.B. Evgen'ev, Biology,
RL   The Johns Hopkins University, 3400 N. Charles St., Baltimore, MD
RL   21218, USA.
XX
RN   [3]
RP   1-2780
RA   Smit A.F.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (05-MAR-2004).
XX
DR   [3] (Consensus)
XX
CC   [3] Drosophila virilis Penelope transposable element. Also in D.
CC   americana, and D. montana of the virilis group. This is a new
CC   consensus of 10 copies in D. virilis which 100% matches the 2
CC   copies that transformed D melanogaster (good for me). The
CC   original contained a copy of a Helitron DNA transposon at the 3'
CC   end and a fraction of a second Penelope at the 5' end. Most
CC   copies appear to lie in tandem repetition in the D. virilis
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           60..2564
FT                 /product="PENELOPE_1p"
FT                 /translation="MSYAKIKTKYKDSKRTINKFQLTLVKLTKLKSSLKFL
FT                 LKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTLTRHTHFYHTKILNL
FT                 LIKHKHNLLQEQTKHMEKAKTNIEQLMTTDDAKAFFESERNIENKITTTLK
FT                 KRQETKHDKLRDQRNLALADNNTQREWFVNKTKIEFPPNVVALLAKGPKFA
FT                 LPISKRDFPLLKYIADGEELVQTIKEKETQESARTKFSLLVKEHKTKNNQN
FT                 SRDRAILDTVEQTRKLLKENINIKILSSDKGNKTVAMDEDEYKNKMTNILD
FT                 DLCAYRTLRLDPTSRLQTKNNTFVAQLFKMGLISKDERNKMTTTTAVPPRI
FT                 YGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILKNLTMDSRYNIKNAVD
FT                 FKDRVNNSQIREEETLVSFDVVSLFPSIPIELALDTIRQKWTKLEEHTNIP
FT                 KQLFMDIVRFCIQENRYFKYEDKIYTQLKGMPMGSPASPVIADILMEELLD
FT                 KITDKLKIKPRLLTKYVDDLFAITNKIDVENILKELNSFHKQIKFTMELEK
FT                 DGKLPFLDSIVSRMDNTLKIKWYRKPIASGRILNFNSNHPKSMIINTALGC
FT                 MNRMMKISDTIYHKEIEHEIKELLTKNDFPPNIIKTLLKRRQIERKKPTEP
FT                 AKIYKSLIYVPRLSERLTNSDCYNKQDIKVAHKPTNTLQKFFNKIKSKIPM
FT                 IEKSNVVYQIPCGGDNNNKCNSVYIGTTKSKLKTRISQHKSDFKLRHQNNI
FT                 QKTALMTHCIRSNHTPNFDETTILQQEQHYNKRHTLEMLHIINTPTYKRLN
FT                 YKTDTENCAHLYRHLLNSQTTSVTISTSKSADV"
XX
SQ   Sequence 2780 BP; 1203 A; 541 C; 434 G; 602 T; 0 other;
     ggtcgccaga gccatcaata aatatcaacg gaaggcacgc cgtatgcaca gcaaccaaca        60
     tgagctacgc aaaaataaaa actaaataca aggattcgaa aagaacaatt aataaattcc       120
     aactaacact ggtaaaatta actaaactta aatctagttt aaaatttttg ttaaaatgta       180
     gaaaatcaaa tttaatacct aacttcatca aaaacttgac acagcatttg accatactga       240
     ccactgacaa taaaacccac cctgacataa caagaacatt gactagacac acacattttt       300
     accataccaa aatattaaac ttacttataa aacacaaaca caacctatta caagaacaaa       360
     caaaacatat ggaaaaagca aaaacaaaca tagaacaact gatgaccaca gatgacgcaa       420
     aagcgttttt tgagagcgag agaaatatag aaaacaaaat aacaacaaca ctcaagaaaa       480
     gacaagaaac gaaacacgat aagttacgag atcaacggaa cctagcctta gcggataaca       540
     acacgcaaag agagtggttt gtaaacaaaa caaaaataga attcccgcca aacgtcgtag       600
     cgttactcgc aaaagggccg aagttcgctc tcccaatcag caagagagat tttcctctct       660
     tgaaatacat cgcagacggt gaggagctag tgcaaacaat aaaagaaaag gaaacacaag       720
     agtcggcgcg cacaaaattc tctttgttag tcaaagagca taaaaccaag aacaaccaaa       780
     acagtaggga tcgagcaata ctggacacag tggaacagac acgaaaatta ctgaaagaaa       840
     atataaatat taaaattcta tcgtcggata agggcaacaa aaccgtagca atggatgagg       900
     atgaatataa aaataaaatg acaaatattt tagacgactt atgcgcgtat agaacattga       960
     gactggatcc gacatcaaga ctacagacaa agaataacac cttcgtagca caattattca      1020
     agatgggtct tatttcaaag gacgaaagaa ataagatgac tacaacaaca gcggtacctc      1080
     cgaggatata tggactacca aaaatacaca aggaaggaac tccactgaga ccaatatgtt      1140
     cttccatagg atctccatct tacgggctgt gcaaatatat aatacaaata ttaaaaaatc      1200
     tgacaatgga ctctaggtac aacatcaaga acgcggtaga ttttaaagac agagtcaaca      1260
     actcccagat tagagaagag gaaacattag tatcttttga cgtagtatcc ttatttccca      1320
     gcataccaat agaattagca cttgacacaa taagacaaaa atggaccaaa ttagaagagc      1380
     acacgaatat accgaaacaa ctatttatgg acatagttag attttgcata caggaaaaca      1440
     gatatttcaa atacgaagac aaaatataca cacaacttaa gggaatgcca atgggatcac      1500
     cggcttcccc agtaatcgca gatatattaa tggaggaact gttggacaag attacagata      1560
     aattaaaaat aaaaccaaga ctcttgacca aatatgtaga tgaccttttt gccataacga      1620
     acaaaataga cgtggaaaat attctaaaag aattgaattc cttccacaaa cagataaaat      1680
     ttacaatgga attagaaaag gacgggaaat taccattttt agactctatt gtaagcagaa      1740
     tggacaacac actcaaaata aagtggtata ggaaacccat agcctccgga cgaatactca      1800
     acttcaattc aaaccaccca aagagtatga taatcaatac agcactaggc tgtatgaata      1860
     gaatgatgaa aatatcggac acaatatacc acaaagaaat tgaacatgaa atcaaagaac      1920
     ttttgaccaa aaatgacttc cccccaaata taatcaaaac attattaaaa agacgacaaa      1980
     tcgaaagaaa aaagccaaca gaacctgcta aaatatacaa atcactaata tatgtaccac      2040
     gactatcaga acgcctcaca aactcagact gttataacaa acaagatata aaagtagcac      2100
     acaaaccgac gaatacatta caaaaattct tcaacaagat aaagtcgaaa atcccgatga      2160
     tcgaaaaaag caacgtcgtt taccaaatac catgtggcgg ggataacaac aacaagtgca      2220
     atagtgtcta cataggtaca acaaaatcga agctaaaaac aaggattagt caacataaat      2280
     cggacttcaa actaagacat caaaataata tacagaaaac agcacttatg acccattgta      2340
     taagaagcaa ccacacacca aattttgatg aaacaacaat cttacaacaa gaacaacact      2400
     ataacaagcg acacacattg gaaatgctac acataattaa cacaccaacc tacaaacgac      2460
     taaactacaa gacagacaca gaaaattgcg ctcacttgta cagacacctc ttaaacagtc      2520
     aaacaacctc agtaacaatc tccacgtcaa aaagcgcaga cgtgtaaaat aatgtatgta      2580
     aaatgttcga aataatgttt aatttattgt attataattg ttaattgttt tttgtatctt      2640
     ggtgttagtg ccctgaagac ggtttgccga tgtgcaaccg aaatatatcg gaagagaatt      2700
     gaataaaatt gtttttcatt gtttgtttta acaaacacgg acctcgagcc agccaacaaa      2760
     taaatattga aatatggaaa                                                  2780
//
ID   Penelope-100_LMi repbase;    DNA;    INV; 2436 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-100_LMi.
XX
NM   Penelope-100_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2436
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 253-253 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           8..2125
FT                 /product="Penelope-100_LMi_1p"
FT                 /translation="ENAFIKNFGYYIQRFILSAFGISSLLSVTSWEWVDSS
FT                 SWAFSDWXHRCASSRQLSKFQRLCHQPLTSGNDTCRQTVINLTSKELDDFT
FT                 VSVLEKGLNFAPTPRSVPTMEFISSIEQAVSRLPEERAEEIRQDVSHILRR
FT                 SRPPQSNISSAERAAIRSLREDPELLILPADKGNATVLISKDDYVSKMEDL
FT                 LKDPSYRVLQKDPTDRIKRTTNSLLMKSSIPEDTIKKLRPGAAVPPRLYGL
FT                 PKVHKDGIPLRPIVSNLSAPTYNLAKFLASVLSPHVGKCEHHISNSMDFIQ
FT                 RLKSLRLGPSDLLVSFDVVSLFTRVPLEESLILINEKLDMEMTKLCRHVLT
FT                 STYFLFNDKYFEQTDGVAMGSPLSPIVANLFMEDFEEMALKTSFLKPTCFF
FT                 RYVDDMFLVWPHGIDSLHRLLDHFNCLHPNIKFTMEIEKDGKLPFLDVLVY
FT                 KKDDGTLGHRVYRKPTHTDRYLHATSCHPPFQRAGVLRTLVKRAYAISDAE
FT                 NLPQELQHLKNVFHQNGYTDRQIRRAFEFGPPREPAEDTSSSVAFLPYAGN
FT                 VSAKIGRILKKHKIKCIFRPPAKTRALLGSVKDDLGLRKPGVYKIPCECGK
FT                 TYIGQTVRTVSDRCVEHHRHTRLMQPEKSAVAEHCLSEGHRMLYDETQVVA
FT                 NTSHYWDCVLKESIEIRITDNTINRDSGYFLSKSWNPVLSDLKKHRHLHQI
FT                 ATNDNL"
XX
SQ   Sequence 2436 BP; 685 A; 526 C; 532 G; 691 T; 2 other;
     ttggtaagag aacgcmttca taaaaaattt tggatattat atccaaagat ttattttatc        60
     tgcatttgga atttcgtcac tgctgtctgt aacatcttgg gagtgggtcg attcttcttc       120
     ttgggcattt tcagattggk tgcataggtg tgcttctagc agacagctgt ctaaatttca       180
     acgtctttgc catcaaccct tgacgtctgg gaatgatact tgtagacaga ctgtgataaa       240
     tctaacaagt aaagaactgg atgattttac tgtttcagtg ttggaaaagg gtttaaactt       300
     tgcacccacg cctagaagtg ttcccactat ggaattcatt tcctcaattg aacaagcagt       360
     gtcacgtctt ccggaggaac gggcggaaga aatcagacaa gatgtttcgc acattttgcg       420
     tcggtcccgg cccccacaga gtaacatttc ctcggctgaa cgtgctgcaa ttcggtctct       480
     tagagaagat cctgagttat tgattttacc agcagacaaa ggcaacgcca ctgttttaat       540
     ctcaaaggac gattacgtga gtaagatgga agatttactt aaggatccat catatcgggt       600
     attgcagaaa gatcctacgg atcgcataaa acggacgacg aattcacttc tgatgaagag       660
     ctctataccc gaagacacta tcaaaaaact tcgacctggt gcagctgttc cacctagatt       720
     atacggattg ccgaaggtcc acaaagatgg gattccatta agaccaattg tcagtaattt       780
     gagtgcacca acttacaatt tggcaaaatt tttggcgtcg gtcctcagcc ctcatgtggg       840
     gaaatgtgaa caccatatat ctaattccat ggattttatt cagcgcttga agtctcttcg       900
     tcttggtccc tctgatttac ttgtgagttt cgatgtggtg tctcttttta ctcgtgtccc       960
     tcttgaagag tcattgatct taattaacga gaaactagat atggaaatga cgaagctttg      1020
     ccgccatgta ctgacgtcca cctatttctt attcaatgac aagtattttg aacagactga      1080
     cggtgtggct atggggagtc ctctgtcccc catagtcgcc aaccttttta tggaggactt      1140
     tgaggaaatg gcactgaaaa catctttttt gaagccgact tgctttttta gatatgttga      1200
     cgatatgttt cttgtttggc cacatggaat agattctctg caccggttat tagatcattt      1260
     taactgtctc catcctaaca tcaaattcac gatggaaatt gaaaaggacg gcaagttacc      1320
     atttttggat gtgttggtct ataaaaaaga tgacggaact cttggacata gagtttacag      1380
     gaaaccgacg catactgata ggtatttaca tgcgaccagc tgtcaccctc cttttcaacg      1440
     tgcaggagtc ctacggacct tggtaaaaag agcatatgcc atctcggatg ctgaaaattt      1500
     acctcaagag ctgcaacatc tcaagaatgt gttccaccaa aatggctata cagacaggca      1560
     gattcgacgg gcttttgagt tcggaccacc acgtgaacca gctgaagaca cttccagttc      1620
     tgttgctttc cttccttatg ctggtaacgt gtctgccaag ataggaagga ttttgaagaa      1680
     acacaaaata aagtgtattt ttcgtccgcc agctaagact agagcacttc ttggctctgt      1740
     taaagatgat ttaggcctaa gaaagcctgg cgtatataaa ataccttgtg agtgcggcaa      1800
     aacatacatt ggccagactg ttcgcaccgt cagtgacaga tgtgttgaac atcaccgcca      1860
     tacgcgattg atgcagcctg aaaaatccgc ggtggctgaa cactgtctct cagagggaca      1920
     caggatgcta tacgacgaga cacaagttgt tgcaaacacc tcacattact gggattgtgt      1980
     tttgaaagaa tcaattgaaa tcagaataac agataacaca attaatcgtg acagtggtta      2040
     ttttctgagt aaatcgtgga atcctgtgtt atcagaccta aagaaacatc ggcatctgca      2100
     tcaaatagca acgaatgaca atctataacg atctatcgtt tttgacaata gccaccactg      2160
     gaggcgctac aacttctctc gcgccagggg tcagcagcta cgagtaaact cacgccctct      2220
     gtacttagcg catgcgcctt cgtactttcg ttgcgtatat agagccagcc gttccacagt      2280
     ttcactcagt cacggcgaga gcggcttagc ttcctcacct gatgatggcg gccagttgga      2340
     ccgcagaaat attgtgttca gatgacagaa tgatccggct ggaaacccgt gaagaatttg      2400
     atcaatttaa tacgccggga aagtctacat agccac                                2436
//
ID   Penelope-101_LMi repbase;    DNA;    INV; 551 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-101_LMi.
XX
NM   Penelope-101_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-551
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 148-148 (2015).
XX
DR   [1] (Consensus)
XX
CC   >80% identical to consensus.
XX
SQ   Sequence 551 BP; 192 A; 126 C; 119 G; 113 T; 1 other;
     ccaccacttg ccacagcaag agtgtatcaa atcccttgca cttgtggcca agtatacata        60
     ggaactacaa aaagaagcat taacacccgc ctgaaggaac acaaaagtaa ttgtcgccta       120
     ggcaagacgg ataaatcagc ggtagcagaa catgcactag gacctggaaa ccatcaaatt       180
     cgattctctg acaccgtagt tctagcaaga ccaaataatt actacgctag gatgtacaga       240
     gaagccatcg aaattcwgaa gcacaaaaac aatttcaaca gaaaggaagg aggacttaat       300
     tagacaaatt gtgggcctta gtgataaata aaataaatag taccaatctt caccacaagc       360
     tccatagcat acgtcggtgc gactccacga tcataggcag cggtctcatg acgtcacgaa       420
     ccgaccattg catgatacgc ataaacagta tggcttgtga gctgacttaa gtgtgaacca       480
     gtgttttgca agcctccgaa gatgtcttca gcagtggaag acgaaacgtc aggcagggag       540
     tatgccctga a                                                            551
//
ID   Penelope-102_LMi repbase;    DNA;    INV; 3273 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-102_LMi.
XX
NM   Penelope-102_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3273
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 254-254 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           493..3075
FT                 /product="Penelope-102_LMi_1p"
FT                 /translation="MMATCMIAEILCPLDTIDRQYTRGYFDYQIRREKLKN
FT                 HIIHLYGEEMYRSMKKFEKLRHRRCRLLSTLAFLKRCRSENVVPNFAKVTH
FT                 HIDSAAAKRIKKRASLALLRERVHFTRRSLEFISLELFKLHLQLASHFTSF
FT                 SWDWIDGVTWVAADSAHKKATGRQTAKFSRLLDKPSLQVPCKTVINLSGME
FT                 LSDDAVSVLEKGLNFAPTPKFTPVAEIISAVEQVAARLPPESAEEIRRETC
FT                 RALTKSKPMKSNITSKERAAIRDLRERPEIVVLPADKGNATVVVSHKDYTE
FT                 KMQSLLNDDSYRKISVDPTKKVENKTRALLKDADLPEGVAKKLLPQGPVPP
FT                 RLYGLPKVHKDGVPLRPIVSNIRAPTYLLAKYLTGILSPYVGKCPHHIRNS
FT                 VDFVKRLNSFRLDESDIMVSFDVVSLFTRVPLRESLDLIGQKFDEKTTELF
FT                 RHVLTSTYFLFNGEYYEQTEGVAMGSPLSPVVANLYMENFEEEALASSEWK
FT                 PTCFFRYVDDTFVIWPHGMDKLLDFLTHLNSIHPNIKFTMETETEGKLPFL
FT                 DVLVKRRADGTLGHGVYRKTTHTDLYLHADSCHHPSQRNGVLKTLVHRART
FT                 ISDAESLPQELEHLRTVFRKNGYSEWQIQRALRPTTTAQPVETDENTREDV
FT                 GTAFIPYTGALSGKVARILKKHQVGTVFCPPNKIRALVGSAKDDLGLRKAG
FT                 VYQIPCQCGKSYIGQTMRTVEDRCVEHQRHTRLMYPSKSAVAEHCLSENHA
FT                 MEYERTRILVQTSRYWDCVVREAIEIRTSDDLINRDCGYNLSKAWEPAIGL
FT                 IKSKSSKRNEVTTTADRALTSTSSQTPSQSVPLRDRGAGRGPRRGRSAGRG
FT                 YLNRPLPG"
XX
SQ   Sequence 3273 BP; 828 A; 818 C; 860 G; 767 T; 0 other;
     atcaaaatat ccacgggtgt actgccggtc tatagtgtcc aacgggcaca atatttcggc        60
     gatcatacat gtcgccatca ggtgaactga cggactgagc tcctggaaac gcgccggcac       120
     ggagatccgc acctacggcg ctcgaaggga agggttctag ctagttaaat cccgccgtgg       180
     acgattggcg ccgagatgac gtcggtgtga gggctctgtc cccgggtcgt cacttagatt       240
     tactcttata acccatcgct ggttcccatt gctaagataa gccaagtcag aggcgttgtg       300
     aatttcaagc tctaacacat caacatcgct gcaatgtgca gcgaccgcgg cgcggaccga       360
     ggggtcgctc cgcgggccga gggtatttaa atcgcccgct accgggctag aacccagttc       420
     ccttcgagca gccgtagcgt gcggatctcc gtgccggcgc gtttccagga gctcagtccg       480
     tcagttcacc tgatgatggc gacatgtatg atcgccgaaa tattgtgccc gttggacact       540
     atagaccggc agtacacccg tggatatttt gattatcaaa tacgccggga gaaactcaag       600
     aatcacatca tacaccttta cggggaggag atgtatcgca gcatgaagaa atttgaaaag       660
     ttgcgccacc gtagatgtcg cttgctaagt actcttgcct ttctaaagag atgtcgttcc       720
     gagaatgttg ttccaaattt tgctaaggtt acgcatcaca tcgattctgc agcagccaag       780
     agaattaaga aacgggccag cctcgcattg cttcgtgaga gagtgcattt cacccgccgt       840
     agccttgagt tcatctcact ggaactattc aaactgcatt tgcaactggc tagtcacttc       900
     acttcttttt cctgggattg gattgatggt gttacctggg ttgcagccga ttccgcccat       960
     aagaaggcaa cgggacgtca aacagctaag ttctcacgcc tccttgacaa accatctctg      1020
     caggttccgt gcaagactgt catcaatctg agtggcatgg agttgagtga tgatgcggtc      1080
     tcggttttgg agaaaggact caactttgct cctaccccca agttcacacc ggtcgcagaa      1140
     attattagtg ctgttgaaca ggttgcagct cgacttccgc ctgaatcagc tgaggaaata      1200
     cgtcgtgaaa cttgtcgtgc gttgacgaaa tccaagccca tgaagtcgaa catcactagt      1260
     aaagagaggg cggccattcg tgacctgagg gagcgccctg aaattgttgt cttaccggct      1320
     gacaaaggca atgctacggt tgttgtctcc cataaggact acactgaaaa gatgcagagc      1380
     ctgctaaatg acgattccta ccggaagatc agcgttgacc ccacaaagaa ggtggagaac      1440
     aagacgaggg cgcttctcaa ggatgcggat ttaccggagg gtgtcgccaa gaaactgcta      1500
     cctcaaggtc cggtaccgcc aagactttat ggactcccta aggttcacaa agatggggtg      1560
     ccgttacgcc ccattgtcag taacatcaga gcacctacat atttgttggc caaatacttg      1620
     acgggaatat taagtcctta tgtgggtaaa tgccctcatc acatccgtaa ttccgtggat      1680
     tttgttaaac gccttaacag cttcaggctg gatgagtcag atatcatggt gagttttgac      1740
     gtcgtttcgt tgtttacgag ggtgcccctt cgagagtcac tagatttgat tggtcagaag      1800
     tttgacgaga agaccaccga actttttagg catgtcttga cctccacgta ttttcttttc      1860
     aatggcgaat actacgaaca aacggaggga gtcgccatgg gtagcccact ctcccctgtg      1920
     gtcgcaaatt tgtacatgga gaatttcgag gaggaagccc tggcatcatc tgaatggaaa      1980
     cctacttgct ttttccgtta cgtggacgac actttcgtca tctggccaca tggtatggat      2040
     aaactccttg acttccttac acatctgaac tccatacacc ccaacatcaa attcactatg      2100
     gagactgaaa cggagggtaa attgccgttc cttgacgtct tggtcaagag aagagctgat      2160
     ggcaccctgg gtcatggtgt gtatcggaag acaacgcaca ctgatctgta tttacacgca      2220
     gacagctgtc accacccttc acagaggaat ggggtactta aaactctagt acatagggcg      2280
     cgcactatct ccgacgcaga gagtctaccc caggaattgg aacacctgag aactgtattc      2340
     cgaaaaaatg ggtactcaga gtggcagatt cagcgggctc tccgcccaac cactacagca      2400
     caacctgtgg aaacggatga aaacacgagg gaggatgtag gcactgcgtt cattccatat      2460
     accggcgcac tctcggggaa ggtcgcccgc attttgaaga aacaccaggt tggaactgtc      2520
     ttttgtccgc cgaataaaat tcgtgcactg gtggggagcg ccaaagatga tctcggtttg      2580
     aggaaggccg gcgtgtacca gattccgtgt cagtgtggca agtcatatat tggacagacg      2640
     atgcgtaccg tcgaggatcg atgcgttgaa caccagaggc acacacgatt gatgtatccg      2700
     agcaagtcgg cggtcgctga acattgtttg tcggagaatc acgcgatgga gtatgaacgc      2760
     actaggattc tggtacagac gtcgagatac tgggactgcg tcgttagaga ggccattgaa      2820
     attcgcacaa gtgacgacct cataaaccgt gactgtggct ataatcttag caaagcttgg      2880
     gaaccagcga ttgggttaat taagagtaaa tctagcaaac gtaacgaagt gacgaccacg      2940
     gcggacagag ccctcacatc gacgtcatct cagacgccgt cgcaatcggt tccactgcgc      3000
     gaccgcggcg cggggcgcgg accacggagg ggtcgctccg cgggccgagg gtatttaaat      3060
     cgcccgctac cgggctagaa cccagttccc ttcgagccgc cgtagcgtgc ggatctccgt      3120
     gccggcgcgt ttccaggagc tcagtccgtc agttcacctg atgatggcga catgtatgat      3180
     cgccgaaata ttgtgcccgt tggacactat agaccggcag tacacccgtg gatattttga      3240
     ttatcaaata cgccgggaga aactgaagaa tca                                   3273
//
ID   Penelope-103_LMi repbase;    DNA;    INV; 3127 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-103_LMi.
XX
NM   Penelope-103_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3127
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 255-255 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(832..1881,1794..2846)
FT                 /product="Penelope-103_LMi_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="RVSWSKADWAHRDSTNRQSAKFGRLAAQEPQKDVPGR
FT                 SVVNLTEKSLDDATMSVLAKGLNFAPTPTSPPFTEFISSTEEAIRPLSVDS
FT                 ADEVRRESCRTLLKCAPQRSNISPAERAALRSLREDTSTVVLPADKGNATV
FT                 LLTREAYNEKIYSQLSDSTYRKIEKDPTSRISRKTASLLNDSSLPKQVIKR
FT                 LRPHSAVPPRLYGLPKIHKDGVPLRLIVSNIGASTYSTAKHLASLLKPYVG
FT                 KCCHHIRNSGDFVNRLKTVKLSSTDLLVSFDVVSLFTKVPLMDSLHLIGNI
FT                 FSEDLTALFEHTLSSTYFLFNNEFFEQTDGVAMGSPCPLWWLTFLWRTLRR
FT                 RHLSLLFRCRHGEPLSPVVANLFMEDFEEKALESAVLKPTVFWRYVDDTFV
FT                 VWPHGREELEKFHRHLNSIHENIKFTMESEKDGALPFLDVLVRRKDDGSLG
FT                 HSVYRKPTHTDLYLQASSCHHPAQTAGVLSTLIHRAHLISDEENLPAELEH
FT                 LEKVFKENGYTPRQIRKAIRNHNNKKQRTEDNEEDYKSVAFLPYAGNVSSK
FT                 IGRLLRKHKIQVIFRPPAKNIALVGSVKDDLLLKKAGVYKIPCECGSAYIG
FT                 QTTRTVQERCTEHERHTRLLQPSKSAVAEHCISMGHSMEYNKTTILAPVSG
FT                 FWNSVIKEAVEIRLADNLINRDNGFQLDKNWNPVLKAIEAQRNRRNHSILD
FT                 D"
XX
SQ   Sequence 3127 BP; 856 A; 732 C; 717 G; 821 T; 1 other;
     tgtgacttct aaaattttcs cggcgtattt cttcttccag taattttcgg gtgtgcagcc        60
     ggatcccatt gacattctgc aacgatattt cggcccagag acgtccggcc atcttcaggt       120
     gagtaggcaa ctactgaaga gcgcaggtac gttcgcggta tttataccga gtattgcgca       180
     tgcgagatac gctggagtct tactgcgcat gtgttagatg gtgacatgcg cggtacggcc       240
     gagctgtgtg tgctgccctc ggtggtgaaa gtgaacactc ctctaatcat gagaatcgaa       300
     tgattctgtc gattccgctg tgcctcaata gctttaatta cagggttcca atttttatcc       360
     agctgaaagc cattgtcacg atttattaaa ttatcagcaa ggcgtatttc aaccgcttct       420
     ttgatgagag agttccgaaa gccggatact ggagctaaaa ttgtgttttg ttgtattcat       480
     agtgtcccat ggaaatgcag tgtctgctac tgctgatttg aaggtgggtg ttcgctcttg       540
     aacttcctat gtaagcagaa ccacatcaca ggaattttaa aaccccattt cagttgcaaa       600
     tcgtctttaa cagatccaca gggctaattc ttgctggtgg aggaagatga cctggatttt       660
     tgtttcctta gcaatctgcc tattttagaa gacacattgc cagcatagga aggatcaact       720
     gattgtaatc ttcttcattg tcttggtgct tgcttcttgt tgttatagtt acaatgtttc       780
     ttatttggcg ttgaaatgca gcagttcttc cctcggctgg gactggattg acgtgtgtcc       840
     tggtccaagg cagattgggc tcacagggat agtacaaaca gacagagtgc aaaatttggc       900
     cgactcgcag cacaagaacc gcaaaaagat gttcctggac gatccgtggt gaacttaacg       960
     gagaaatctc ttgacgatgc gacgatgtct gtgcttgcga agggtttgaa tttcgctccc      1020
     acgcctactt cgcctccttt tacggagttc atcagttcta ctgaggaagc cataagacct      1080
     ctctctgtgg attctgcaga cgaagttcga cgtgaatctt gccgaactct gttgaagtgt      1140
     gctccacaac gaagtaacat ctcgccagct gaaagagcgg ctctccgcag cttacgagaa      1200
     gatactagca cagtcgtgct ccctgcagat aagggtaacg ccacggtcct cttgacaagg      1260
     gaagcctaca acgagaagat ttatagccag ctatcggatt ctacgtaccg caaaattgaa      1320
     aaggacccaa cgagtcgcat atcaaggaaa accgcttcac tgttgaatga tagttcttta      1380
     ccaaaacaag tcatcaagag gctgagacca cacagtgcag taccaccaag actttacggc      1440
     cttcccaaga ttcacaagga tggtgtccca ctacgattaa tagtgagcaa tattggtgcg      1500
     tcgacctatt ctaccgctaa acatctggct tctttgctca agccgtacgt gggcaagtgt      1560
     tgtcaccaca tacgtaactc tggagatttt gtgaatcgct tgaagacagt taagctgagc      1620
     agcacggatt tactagtcag ctttgatgtg gtctcgctct ttacaaaagt gcctttaatg      1680
     gactcattac atctcattgg taacattttc agtgaagacc tgacagcctt gtttgagcat      1740
     actctctcct caacctactt tttatttaat aacgaatttt ttgaacaaac tgacggtgtc      1800
     gccatgggga gcccctgtcc cctgtggtgg ctaacctttt tatggaggac tttgaggaga      1860
     aggcacttga gtctgctgtt ttaaagccca ctgtgttctg gcgctacgta gacgacactt      1920
     tcgttgtatg gcctcatggt agagaggaac tggagaaatt ccaccgtcac ttaaactcaa      1980
     tacatgagaa tatcaagttc accatggaga gtgaaaaaga tggagcttta ccatttcttg      2040
     acgtgctggt acgacgcaag gatgacggct ctttgggaca ctctgtgtac aggaaaccta      2100
     cacacacaga tctatacctc caggcgtcca gctgccatca tcccgcacaa accgctggtg      2160
     tccttagtac gcttatacat cgagcacact tgatatcgga cgaagaaaat cttcctgcag      2220
     aactggaaca cttggagaaa gtgttcaaag agaatggcta cactccacgc caaataagga      2280
     aggccatacg taaccataac aacaagaagc aacgcaccga ggacaatgaa gaagattaca      2340
     aatcagttgc attccttcct tatgctggca atgtgtcctc taaaataggc agattgctaa      2400
     ggaaacataa aatccaggtc atcttccgtc caccagcgaa gaatatagcc ctagtcggat      2460
     ctgtaaaaga cgatttgcta ctgaaaaaag cgggcgttta taaaattccc tgcgagtgtg      2520
     gttctgctta cataggtcag acgactcgaa cagttcaaga gcgctgtacg gagcacgaaa      2580
     gacacacccg tcttctgcaa ccgtcgaaat cagcagtagc agagcactgc atttccatgg      2640
     gacactccat ggaatacaac aaaaccacaa ttttagctcc agtttccggc ttttggaact      2700
     cagtcatcaa agaagcggtt gaaatacgcc ttgctgacaa tttaataaat cgtgacaacg      2760
     gctttcagct ggataaaaat tggaaccctg tacttaaagc tattgaggca cagcggaatc      2820
     gacggaatca ttcgattctc gatgattaga tgagtgttca ctttcaccac cgagggcagc      2880
     acacacagct cggccgtacc gcgcatgtca ccatctaaca catgcgcagt aagactccag      2940
     cgtatctcgc atgcgcaata ctcggcataa ataccgcgaa cgtacctgcg ctcttcagta      3000
     gttgcctact cacctgaaga tggccggacg tctctgggcc gaaatatcgt tgcagaatgc      3060
     caatgggatc cggctgcata cccgaaaatt actggaagaa gaaatacgcc gggaaaattt      3120
     tagaagt                                                                3127
//
ID   Penelope-104_LMi repbase;    DNA;    INV; 3058 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-104_LMi.
XX
NM   Penelope-104_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3058
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 256-256 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(825..1055,1027..2799)
FT                 /product="Penelope-104_LMi_1p"
FT                 /translation="PFNHGNNDQNKRAHRVVVNLSNQELDEGSVAALSKGL
FT                 NFSPAPRRLPILDIVSGVEQCTDISHMTQLRTSGLPPAVSGRQAYHQPYPS
FT                 QSQATKSNMSREERLGLCLLRENEDLVVLPADKGNATVVLNTEDYHLKVLH
FT                 LLADDTYRKLSRDPTQTIVRKTSKLIKDSGIPEEVVKKLIPRASRPPRLYG
FT                 LPKLHKEGIPLRPIVSAISSPTYRLAKHLAGLLAPKLGHCEHHVVNSQSFV
FT                 ETLKKMKIEQNDIMVSLDVVSLFTRVPVQDTLDLLAQQFSPEIVKLFRHTL
FT                 TTTYFQYRNEFYEMTDGTAMGSPLSPAVANFFMEHFEEQALNSARLRPSYF
FT                 LRYVDDTFVIWPHGKDTLQQFVDHMNGVHPNIKFTVEMEKDGKLPFLDVLV
FT                 ERKAGGRLGHSVYRKSTHTDRYLNGNSFHHPVHKKAVLNTLVHRAKVISDD
FT                 DHLESEFQYLKRVFKENGYSKGEISKAFRCHQRKETRESTDEAKPAAFLPF
FT                 CGATTSKIGRLLKRHGLRPVFRPASKIRDMLRPIKDSTGLRVPGVYGVPCE
FT                 CGSIYIGQTIRTVAERCAEHTRHIKQRELEKSALAEHCLTNGHKILFENTK
FT                 ILAQTSYYWDSVIKEAAEIRLNGNNFNRDQGYTLSRAWGRALDVERKQRSR
FT                 ANREARAPGSNVAPAVRST"
XX
SQ   Sequence 3058 BP; 849 A; 725 C; 745 G; 738 T; 1 other;
     gcgatggcat tcttccatta atattctcag tttacaagcg tcatgtcgga taaaatccta        60
     agctttcgag gcaagttctt tgccattgtg atcgagagta aaatactgac tgccgtgttg       120
     gaaggcgttc ctatatagca atgcagcgct gtttctggaa gttttggagg gccggagagc       180
     gtctgcagga agacagaggg cctggcggcc gcagtaccgc gtgacatact ggaggtaccg       240
     caggcgccac atttgaacct ggcgctctgt tcgctattag tgcgaggcct ctgttttcgt       300
     ctacgtccag ggccagccgc cacgccctgc tgagtgtata ccttggtctc tttgaaattg       360
     ttgccattta atttttcagc cgcatctttt ataacagaat ccagtgatat gactctgggc       420
     cagaattttc gtgttttcaa atagtatttt atgcccattt gttagacaat gctctgccaa       480
     ggctgacttc tcaagctctt tttttgtgtg ttcacaatga ggacatattg cgagttgcac       540
     tsctggaaaa actacagaag aagaaatcaa tctctgagtt attagcatat tgcagactgt       600
     cgggaggagg aggtattcgc actttgctat agtcgagcac cacatctgaa ctgttgcagt       660
     agacaaattt tgaagaagac cagccagcca tagtgagaca aaggtatgag ctcaatgcca       720
     aaacctgtgt catctgtctt ggcatcaact ttgtcgcatc ttattgggag tggcaggcaa       780
     caacgtttga gtttgtaaca acgtcaagca gtgtccaagt ttgaccgttt aaccacggaa       840
     acaacgacca gaataaacga gcacacagag tagttgtcaa tctttccaac caagaactgg       900
     acgagggctc tgttgcagca ttgagtaaag gcctcaattt ctctccagct ccacgacgtc       960
     ttccgatact ggatattgtc agtggtgtag aacagtgcac agacatctct cacatgacgc      1020
     agctgaggac gtcaggctta ccaccagccg tatcctagcc aaagccaagc cacaaaatct      1080
     aatatgagcc gggaggaacg acttggccta tgtttattac gtgagaatga ggacttggtt      1140
     gttttaccag ccgataaagg aaacgccact gtggtcctga acactgaaga ctaccatcta      1200
     aaggtgctcc acttactggc agacgataca taccgtaaac tcagccgtga tccaacacag      1260
     accatcgtca ggaagacatc aaagttaatt aaggactctg gtataccaga agaagtggtg      1320
     aagaaactga ttccacgtgc atcaagacct cccaggcttt atggattacc gaagctacac      1380
     aaggaaggga tcccgttaag accgattgtc agtgcaatca gttctcccac atacagattg      1440
     gcaaaacatc tggcaggatt attggctcca aaactgggac actgtgaaca tcacgttgta      1500
     aactcacagt cgttcgtcga aactctcaag aagatgaaaa tagagcaaaa cgacattatg      1560
     gttagtttag acgtggtgtc gctttttaca agggtgccgg tacaagacac cttggacctg      1620
     ttggcgcaac aattttcacc tgagatcgtc aagctgttcc gccatacctt aacgacaacg      1680
     tactttcagt accgcaacga attttatgag atgacggatg gcacagcaat gggatctcca      1740
     ctgtctccgg ctgtggcaaa tttctttatg gagcattttg aagaacaggc acttaactca      1800
     gcgaggttgc gtccatccta cttcctacgc tacgttgacg acactttcgt gatatggcct      1860
     catggcaagg atacattgca gcagttcgta gaccacatga acggtgtcca tcccaacata      1920
     aaattcactg tcgagatgga gaaggatggt aagctcccat tcttggatgt tttggtcgag      1980
     cgaaaagcag gaggccggct tggtcattca gtgtatagga aatctacaca cactgatcgc      2040
     tacttgaacg gcaacagctt ccatcatcct gtacacaaga aagctgtcct gaacacgcta      2100
     gtacacaggg caaaggttat ttctgacgac gaccatttgg agtctgaatt ccaatatttg      2160
     aagcgtgttt tcaaggaaaa cggttacagc aaaggtgaaa tttctaaagc tttccgttgc      2220
     caccaacgta aggaaactcg tgaatcaacg gacgaggcca agccagcagc attcctccca      2280
     ttctgtggag caacgactag caagattgga cgcctcctga agagacatgg actgagacca      2340
     gttttccggc ccgcctccaa gatcagagac atgttacgcc ccattaagga cagtacaggt      2400
     ctgcgtgttc cgggtgtata tggcgtcccc tgtgagtgcg gaagtattta cattggacag      2460
     actattagaa ctgttgctga acgttgtgca gaacacactc ggcacataaa acaaagagag      2520
     cttgagaagt cagccttggc agaacattgc ctaacaaatg ggcataaaat actatttgaa      2580
     aacacgaaaa ttctggccca aacatcatat tactgggatt ctgttataaa agaggcggct      2640
     gaaattagat taaacggcaa caatttcaac agagaccagg ggtatacact cagcagggcg      2700
     tgggggcggg ccctggacgt agagcggaaa cagaggtctc gcgctaatag ggaagcgaga      2760
     gcgccaggtt caaatgtggc gccggcggta cgctccacgt gacgtcacgc ggtaccgcgg      2820
     cccatcggcc cgcgctgtct tcccgcgcag gcgctctccg gccctccaga aacttccaga      2880
     cgcagcgctg cagctatata agcaggacgc cttgccaaca ccggcagtca gtgattttac      2940
     tcctgatgac gatggcggag cttgccatcg aaagctcgag gattttatcc gacatgacgc      3000
     ggcttgtaaa ccgagaatat tttatggaag aatgccgtcg cgaaagactc cgaggaca        3058
//
ID   Penelope-105_LMi repbase;    DNA;    INV; 2879 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-105_LMi.
XX
NM   Penelope-105_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2879
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 257-257 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(499..2295,2277..2540,2544..2762)
FT                 /product="Penelope-105_LMi_1p"
FT                 /translation="TRNPKTAKGSCRGNQAGDLPCSDKGAKNNISAAERSV
FT                 LRSLREDTEIVILPADKGNATVILSKPMYLSKMNQLLDDSAYRLLNKDPTN
FT                 KIQRKTLELIKNTTIPAVVAKRLRTQAPVPPRLYGLPKIHKDSVPLRPIVS
FT                 NIGAPTYNLAKYLAAQLSPLVGKCEHHIRNSEDFISRLKNLRLSPSDILVS
FT                 FDVVSLFTRVPLQESLSLIGEKFEGELVDLFKHVLTSTYFLFNDQYFEQTD
FT                 GVAMGSPLSPIVANLFMEDFEERALQSAELKPTCFWRYVDDTFVVWPHGTA
FT                 SLDSFLNHLNSLHRNIKFTMEMERNGELPFLDVLVRKKEDGTLGHAVYRKS
FT                 THTDLYLQATSCHHPAQRSGVLRTLVHRARVISDSDSLSDELRHLRTVFLK
FT                 NGYSEREIRRALHPAHVRQSEEQEETEDQRGMVILPYVGGVSSKIGRLLKK
FT                 QNVKCVFRPPTKLRALLGSVKDDLGLRRPGVYKIPCSCGKSYIGQTCRTVE
FT                 DRCVEHRRHTRLDQPEKSAVAEHCLSTGHSMDYENTKIISSTCSYWDSVIK
FT                 EAVQIRSSSNLLNRDTGYQLSTAWDPALNLLKSRRPPGETTACADEEASVA
FT                 TRGIGSDVVLSVDHGEMDTGQHGHTVYRHAATNSGRWGSRRRRLACGQFCA
FT                 SVEMFTVTVQQVAQLALSFMDAVRKIYNIITIRYRIINMKINKKLLNLLIK
FT                 NKIKINKEISQLFIVNETSQNHSLCAIGHRFWRVHACAFPSLNALNRNSSV
FT                 TAQQCVHRT"
XX
SQ   Sequence 2879 BP; 824 A; 668 C; 690 G; 696 T; 1 other;
     gaacaagaag tgcagactgc tgtgtgccct cgcattttta ctaagatgtc gagatcatcg        60
     aattataccg acgtttgcaa aggtaacaca cttcataaat tctgcagccg ccagtagaat       120
     taaaaatcgt gctagccaag ctcttgtgag ggagagaatt catcatactc gacgggaact       180
     ggactttgta tccagagaat taatggcact tcacctgaag atttcgtcag aactctcgga       240
     actttcatgg acgtgggttg atagcgccac ctgggcgttt tcagactgga agcgacaatc       300
     atgacacaaa tcgtcagatt gaaaaatttc atcgcctcag agaccgttgt ccgcaagaag       360
     agaagttaga agataaactt catagcggac tgtgtacaac ctcacagata aaattttgtc       420
     tgacgcagcg gtttcggtct tggagaaagg gctgaacttc gcgcccaccc cgagaacacc       480
     gcccattctg gatgttgaac aaggaatcct aaaactgcca agggaagctg cagaggaaat       540
     caggcgggag acttgccgtg ctctgacaag ggcgccaaga acaacatctc ggctgcagag       600
     aggtcagtgc ttcgatcgct acgtgaggat actgaaattg tgatcttacc ggcggacaag       660
     ggcaacgcta ctgtcatcct atccaaaccg atgtacttaa gcaagatgaa ccagttatta       720
     gacgactctg catatcgcct tctaaacaag gatcccacaa acaagataca acggaagact       780
     ttggagctta ttaagaacac cacgatacct gctgttgtgg ccaagagact ccgcacccag       840
     gcaccggttc ctcccagatt gtacggactg cctaagatac ataaggattc cgtgcctctt       900
     cgaccgattg tcagtaatat tggggcgcct acatacaact tggcgaaata cctggcagcg       960
     caactgagtc ctttggtagg aaagtgtgag catcacatcc gaaactctga agatttcatc      1020
     agtcgcctca agaacttgcg gctttcacca tctgatattc tcgttagttt cgacgtggta      1080
     tcacttttca ccagagtgcc attacaggaa tcattgtcgc tcattggcga gaagttcgaa      1140
     ggggaacttg ttgatttgtt taaacatgtg ctcacctcga cttacttttt atttaatgac      1200
     caatattttg aacagactga cggtgtcgca atgggtagtc ccctgtcacc cattgtggcg      1260
     aatcttttta tggaagactt cgaggagaga gcacttcagt cagcagaatt gaaacctaca      1320
     tgtttttggc gatatgtaga tgatacgttt gtagtctggc cccacggtac tgcatcgctg      1380
     gattcatttt taaaccacct aaattctctt catcggaaca tcaagtttac tatggagatg      1440
     gaaagaaacg gcgaactacc tttcctggac gttttggtac ggaagaaaga ggatggcacc      1500
     ttgggtcacg ccgtgtaccg taaatcaaca cacacggatt tatacttaca ggccaccagt      1560
     tgtcaccatc ctgcgcaacg aagtggtgtg cttaggacgt tggtccacag ggcacgtgtc      1620
     atatcagact cggacagcct gtctgatgag ttacgccacc tccgtaccgt tttcttaaag      1680
     aacggatact ctgaacggga gattcgccgt gccttacacc cggcgcatgt cagacagagt      1740
     gaggagcagg aagaaaccga agaccaaaga ggaatggtca tcttgccata tgtcggcggt      1800
     gtttcttcaa aaataggaag attactgaag aaacagaatg ttaaatgtgt cttccgcccg      1860
     ccaacgaaac taagagctct tctaggatct gtaaaggacg atcttggtct gagaaggccc      1920
     ggtgtctaca agattccctg tagctgcggg aaatcctata tcggacaaac gtgtcgcacc      1980
     gtggaggaca gatgcgttga acatcgacga cacacgcgtc tggaccagcc agagaaatct      2040
     gcagtggctg aacactgcct cagtacaggg cacagtatgg attacgaaaa caccaaaatt      2100
     atttcgtcga cgtgctcgta ctgggacagt gttattaaag aggcggtgca aattcgcagc      2160
     tcttcaaatc tgctcaacag ggacaccggc taccaactca gcacagcttg ggatcctgca      2220
     ctgaatcttt taaaatcacg aagaccaccg ggggaaacga ctgcgtgtgc agatgaagag      2280
     gcatcggtag cgacgtagtt ttatcggttg accatggcga gatggacaca ggccagcatg      2340
     gacacacagt atatcggcat gcggctacca acagtgggcg ttggggcagt cggcggcggc      2400
     gcttagcwtg tggacagttc tgcgcgagtg tcgaaatgtt taccgtcaca gtccaacagg      2460
     tggcgcagct ggctctttcg tttatggatg cagtacgaaa aatctacaat attattacca      2520
     tcagatatag aataataaat taaatgaaaa ttaataagaa gcttttaaac ctgctaataa      2580
     aaaataaaat aaaaataaat aaagaaatat cgcaactgtt catcgtaaac gaaacttccc      2640
     aaaatcattc cttgtgcgct attggccacc gtttttggcg cgttcacgca tgcgcattcc      2700
     cttctttgaa tgctctaaat aggaattcgt cggtcacggc ccagcagtgt gtccatcgca      2760
     cctgaagatg tcagccaggt gtgctgacga aatattgtgc agttttgaca ataatatccg      2820
     acgtctcgcc cgagaaccat atttagaaga aatccgtcgg gaaagcctga agcaacaca       2879
//
ID   Penelope-106_LMi repbase;    DNA;    INV; 2874 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-106_LMi.
XX
NM   Penelope-106_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2874
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 258-258 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(341..1528,1470..2513)
FT                 /product="Penelope-106_LMi_1p"
FT                 /translation="QGTGERKIRYTRRELDSVSKNLLSLHLKISSCLSVDS
FT                 WEWVDTASWALSDWTRQQTTARQTSKFQLLTRRSSQENTFNGRTVLNFTDK
FT                 PLSEPAMSVLEKGLNFAPTPKTLPIKDFISAVEQGVSKLPIDTAEEIRREA
FT                 CRAITRMPAPKQNISFEERKALRSLREDTEIVILPADKGNATVLLPATSYT
FT                 DKMMNLLQDSAYRRLQKDPTDAVQRKTSALLKSSDFPEHLKKSLRERAPVP
FT                 PRLYGLPKVHKSGVPLRPIVSNIGAPTYHLAKHLASLLSPLVGKCEHHIRN
FT                 SEDFIRRLKNLRLEPTDLLVSFDVVSLFTRVPLMDSLQLIGAALEEDILHL
FT                 FKHVLTSTYFLFNNEYFEQTDGVAMGSPLSPIVANLFMEDFEDKATSDGAI
FT                 ETLIFLWKISRTKPLQTAPLKPKCFWRYVDDTFVVWPHGSATLPSFLEHLN
FT                 SLHPNICFTMEVEENGKLPFLDVMVRRNEDGSLGHGVFRKPTHTDLYLKAT
FT                 SCHHPSQRSGVLRTLVHRARAISDADCIQAELNHLRSVFAQNGYTEKQIRA
FT                 AFRPARSKSEEELEEAESSTKMVFLPYVGGVSFKIGRLFKRHNIKCVFRPP
FT                 ARVQTMLGSVKDNLGLRRPGIYKIPCQCGMSYIGQTCRTVKDRCDEHKRHT
FT                 RLCQPEKSAVAEHSLDSGHCMNYEETKIISSASTYWDSIIKEAVEIRIAKD
FT                 LINRDTGFQLSKAWEPALAVLRQHQPQTDDGHQSTQMGHRSQDA"
XX
SQ   Sequence 2874 BP; 791 A; 737 C; 689 G; 656 T; 1 other;
     cgagcagaga agcaacagcg gcagttcacc tgaagatggc gagcagctgt ctcgcagaaa        60
     tattgtgtga ttattacaat agkatccgac ggtactcccg tgaaccattc aagaatatgt       120
     tacgtcggga aagcctgaaa cagcacatct ggtacctcta cggggaggag atggtcagca       180
     gtatacgtga gttcgataaa cttcgaaaca agaagaaccg attgttgtgc tctctcgcat       240
     tcttattgag atgtcgggac cagcaaatta tcccgacatt tgctaagttc actcactatg       300
     tcgactcggc ggctgccaag aggattaaac aacgtgctag caaggcactg gtgagagaaa       360
     aatccgttac accaggcgtg aattagacag tgtctccaaa aatctgcttt cactccattt       420
     gaagatctcg tcttgtctgt ctgtggattc ctgggagtgg gtggacaccg cttcatgggc       480
     gctttcggac tggacgcggc agcaaaccac ggcgcgtcaa acttccaagt tccagcttct       540
     tacacgtcga tcatcgcaag aaaacacatt taatggacgg actgtgttga atttcacaga       600
     taaaccactg agcgaacccg cgatgtcagt gttggaaaag ggacttaatt ttgcgcccac       660
     tccgaaaacc ttacctatca aggacttcat cagtgcggtt gagcaaggtg tctctaaact       720
     tccgattgat actgctgaag aaataaggcg agaggcctgc agggccataa caaggatgcc       780
     cgcacccaag caaaacatca gctttgaaga aaggaaagca ctccgttctt taagagaaga       840
     cacagagatc gtgattttac cagctgacaa gggcaacgct actgttctcc tgcctgcgac       900
     gtcttacact gacaagatga tgaacttact acaggactca gcgtatcgtc gcctccagaa       960
     agatccgacg gatgcagtac aacggaagac atccgccctc ctcaaatcca gcgactttcc      1020
     ggaacatctg aagaagagtt taagagaacg agcgcctgtc ccacctcgcc tttacggttt      1080
     accaaaggtg cacaaaagtg gagttccgct aagaccgatt gtaagcaata ttggagcccc      1140
     aacctatcat ctggctaagc atctggcatc tctcctcagc cctttggtcg gaaaatgtga      1200
     acaccacatt cggaactcgg aagattttat acggcgtctg aagaacctac gcctggaacc      1260
     tacagaccta ttggtgagct tcgacgtggt ctccctgttc acaagggtgc ctctaatgga      1320
     ctccttacaa ctcattgggg ccgcgctgga agaggacatt ttacatcttt ttaaacatgt      1380
     gctcacctcg acctactttt tatttaacaa cgaatatttt gagcagactg acggtgttgc      1440
     tatgggcagc cctctgtctc ccatagtagc taatcttttt atggaagatt tcgaggacaa      1500
     agccacttca gacggcgcca ttgaaaccta aatgcttttg gaggtatgta gacgatacct      1560
     tcgttgtatg gccacatggg tctgccacac tgccttcgtt cttagaacat ctcaactcac      1620
     tccacccgaa catctgtttt accatggaag tggaagaaaa tggaaagctc ccgtttctgg      1680
     acgtcatggt tcgccgaaat gaagacggtt ccttgggcca tggtgtgttt cgtaaaccta      1740
     cacacaccga cctgtatctg aaagctacga gctgtcatca tccatctcaa cgcagcggtg      1800
     tactacggac actcgtacac agagcaagag cgatctcaga tgcagattgt atacaagcag      1860
     aactcaacca tcttcgctct gtgtttgccc agaacggcta cactgagaaa cagattcgtg      1920
     ctgcatttcg accagctcgc tcgaaatctg aagaggaact agaagaagcg gagagctcca      1980
     ctaagatggt ttttcttccc tacgtcggtg gtgtgtcctt caagattggc agactgttta      2040
     aaagacataa tataaagtgt gtcttccgcc ctccagcgag agtgcagaca atgctgggct      2100
     ccgttaaaga caacctcggc ctcaggagac cgggaatata caaaatcccg tgccagtgtg      2160
     gaatgtctta tattggacag acgtgtcgca ctgtgaaaga cagatgcgac gaacataaac      2220
     gccacacaag attgtgtcaa ccagaaaaat cggctgtggc tgaacacagt cttgattcgg      2280
     gacactgcat gaattacgaa gagaccaaga tcatttcttc cgcttccacc tactgggact      2340
     caataattaa agaggccgtc gaaatacgca ttgcaaaaga tttaattaat agagacacgg      2400
     gattccaact cagtaaagca tgggaaccgg ccttggcagt actgaggcag catcagccgc      2460
     agacagacga tggtcaccaa tcgacgcaga tgggtcatcg aagtcaagac gcgtaaaaca      2520
     cgcacttttt cctccggttg gcgcgcgcac aaggggtcca ccgccagcgg ccgctcttgc      2580
     ccgcgccgcg cctgcgcaga ccaccagcgg cccgctcaac ggccctccgg tagggggctc      2640
     tccatgttca cgccgtcgac gctctggtct gccatgacgt cacagcagcg gcgcctgcgc      2700
     cgtggtaaca agccaccata tatattgcga gcagagaagc aacagcggca gttcacctga      2760
     agatggcgag cagctgtctc gcagaaatat tgtgcgatta ttacaatagt atccgacggt      2820
     actcccgtga accattcaag aatatgttac gtcgggaaag cctgaaacag caca            2874
//
ID   Penelope-107_LMi repbase;    DNA;    INV; 2150 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-107_LMi.
XX
NM   Penelope-107_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2150
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 259-259 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..1856
FT                 /product="Penelope-107_LMi_1p"
FT                 /translation="LCACSRRPLLPIHLLLEQAVYSLPEERAEEIRQEVCH
FT                 TLRRARPPRDNVSSAERAAIRSLRNDDEIIVLPADKGNATVVLTRDDYVLK
FT                 MNSLLNDPAYRRLSCDPTERIKRKTLSLLKSSKLSKDLCKKLHPGAAVPPR
FT                 LYGLPKVHKDGIPLRPIISNIGAPTYNLAKYLTSILSPLVGKCEHHISNSV
FT                 DFIRRLQSLRLESSDLLVSFDVVSLFTRVPLEDSLCLISEKLDDDLVKLCR
FT                 HVLTSTYFLFNDHXFEQTDGVAMGSPLSPVVANLFMEDFEDMALRTSALQP
FT                 KCFWRYVDDTFFVWPHGRDSLNRFLDHFNCLHPNIKFTMEVESDGKLPFLD
FT                 VMVYKKHDGTLGHSVHRKPTHTDLYLNARSCHPPHQRSGVLKTLVRRAYAV
FT                 SDADSLPQELSHLTSVFKENGYSEKQILRAMQFGPSREVHEEEDRSVAFIP
FT                 YAGGISHKISRILRKFNIQSVFRPPPKIRTLLGSVKDDLGLKKQGVYRIPC
FT                 ECGKAYIGRSIRTVHDRCVEHRRHIRLLQPEKSAVAEHCLNEEHRMLFDET
FT                 RIVASTSGFWDNVYKESIEIRLSENLINRDKGFPLSRAWNPVLSNMKKHRS
FT                 FMQPTRLLEDNP"
XX
SQ   Sequence 2150 BP; 572 A; 505 C; 515 G; 556 T; 2 other;
     ttggcggtac tagagaaagg tcttaacttt gcgcctgctc caggagaccc ctgttaccga        60
     ttcatctgct cttggaacaa gcagtataca gcctcccgga agaacgtgca gaagaaatta       120
     ggcaagaagt ctgccacaca ttgcggcgtg cccgaccacc gcgggacaac gtctcttctg       180
     cggagagagc cgccattcgt tcccttagga atgatgatga aattattgtt ttaccagctg       240
     acaagggtaa tgccacggtt gtcttgacac gggatgatta tgtccttaaa atgaattctt       300
     tactgaatga cccggcatac agaaggttga gctgcgatcc cacagaaaga attaaacgaa       360
     agactctttc tcttttgaaa tcgagcaagt tgtcaaaaga cctgtgcaag aaacttcatc       420
     ctggagctgc tgttcctcca aggctatatg gattgcctaa ggtacataag gatggcattc       480
     ctttacgccc aattattagc aacatagggg cacctaccta taatctggca aaatacctga       540
     cttccatcct tagccccttg gttggcaagt gtgaacatca tatctccaat tctgtggatt       600
     ttattcgacg actgcaatct ttgaggcttg agtcttcgga cttattggtc agttttgatg       660
     tggtttcact gttcactcgt gtcccactgg aagattccct gtgtctgatt agcgaaaaac       720
     tggatgatga cttggtcaag ctttgtcgtc atgtgctgac atccacgtat tttttattta       780
     atgaccacwt ttttgaacag actgacggag tggctatggg gagtccttta tcacccgtag       840
     ttgccaattt gtttatggag gattttgagg atatggcact gaggacttcg gctttgcaac       900
     caaagtgttt ctggagatat gttgatgaca cattctttgt gtggccccat ggacgggatt       960
     ctctgaatcg atttcttgac cacttcaact gtctccatcc caatatcaaa ttcaccatgg      1020
     aggttgaaag cgatgggaag cttccgttcc tggatgtcat ggtgtacaag aaacatgatg      1080
     gtaccctggg acacagtgtt catcggaagc ccacgcatac agatctgtac ctcaatgcaa      1140
     gaagctgcca cccaccacac caacgcagtg gcgtccttaa gactctggta cgcagagctt      1200
     atgcagtttc cgatgcagac agcctaccac aggaactttc acacttgact tctgtgttta      1260
     aggaaaatgg gtactccgag aagcagattc ttcgagctat gcagtttgga ccatcccggg      1320
     aagtacatga agaggaagac agatctgttg cttttattcc gtatgcaggg ggcatatctc      1380
     acaaaattag cagaatccta aggaaattta acatccagag tgtgttccgt ccaccaccca      1440
     agatcaggac acttttagga tccgttaaag acgacttggg ccttaaaaaa cagggtgtgt      1500
     acaggattcc atgcgagtgt gggaaggcgt acattggcag gtcgatccgc acagttcatg      1560
     acagatgtgt agaacatcgc cgtcacatca ggcttctaca gcccgaaaaa tcagcagttg      1620
     cggaacattg tctaaacgag gaacatagga tgttgttcga tgaaactcgt attgtggcca      1680
     gcacgtccgg tttttgggac aatgtttata aagagtccat tgaaatcagg ctgtcagaaa      1740
     atttaattaa tagagacaag ggttttccgc ttagcagggc gtggaacccg gttttatcaa      1800
     atatgaaaaa acatcgatct tttatgcaac ccaccagatt gctggaagac aacccatgac      1860
     tgcgatatat cgcgagcacc gcctttccgc caccggcggc gccgcaagac ctgtctgtgt      1920
     gcagtacctg tggcaggccg cgcatgcgcc ttacaccact cgcaggccta tataggacgg      1980
     cgttccatgc cctcggcatc agttgtcggc gagtccagca gcagcagttc ccctgaggat      2040
     ggcggacagg tgtwccgccg aaatattggg tcagtttgac ttcaaaatcc ggcagcaaac      2100
     ccgaagaaac tatgaagaac tattacgccg ggaaagccta cgaaactaca                 2150
//
ID   Penelope-108_LMi repbase;    DNA;    INV; 2656 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-108_LMi.
XX
NM   Penelope-108_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2656
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 260-260 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..872,790..2313)
FT                 /product="Penelope-108_LMi_1p"
FT                 /translation="RSHDIIPKFAKVVHFIKTAAANKITRNASLALIRERI
FT                 RYTRRKLDLISEELYHLHLKIAASLPPFTWEWTDGITWAKSDWTHQVSTSR
FT                 QVAKFDRLTTQSQQDVSFKTSVFNFTNKDLDNATMSVLGKGLNFAPTPKPL
FT                 PLTSFISGIEEAVRKLPGDSAEEIRREACRALTRSRPQKSNLSSTERAALR
FT                 NLRNDSQTLVLPADKGNATVLLPRDVYVEKMHNLLDESTYRKIDKDPTSRV
FT                 ERKTASLLNASSLPKDVANKLKGRSSVPPQIIWPSKGTQSFANVQFRRNRA
FT                 AVRCPPRLYGLPKVHKVLQTSSSEEIENLKPSLEHILKVLTFRPIVSNIGA
FT                 PTYSLAKYLASLLRPHVGKCEHHIRNSSDFISRLKNLKLNSTDLLVSFDVV
FT                 SLFTKVPLADSLSLLSNMFEDDITALFKHALTSTYFLFHEQYFEQIDGVAM
FT                 GSPLSPLVANLFMEDFEEKALNSATLRPTVFWRYVDDTFIVWPHGEDKLTE
FT                 FLDHLNSIHENIKFTMEREKNGCLPFLDVLVRRKEDGFLGHCVYRKPTHTD
FT                 LYLQASSCHHPSQTMSVLKTLVHRAQVVSDADSLQDELLHLEAVFKKNGYS
FT                 QHQIKKALQIKTPEKSQEKDEEEREVKSTAFLPYVGNVSSKIARIMKKHKV
FT                 DVIFRPPAKTSALLGSVKDDLLLRKAGVYEIPCECGKRYIGQTTRTVQERC
FT                 VEHQRYTRLLQSNKSAVAEHCISTGHSMNYKEVKILTTASTFWDSVVKEAV
FT                 HIQLADHLLNRDDGFHLDNAWKPLISRLRSERMSASSLPIDVTTFND"
XX
SQ   Sequence 2656 BP; 783 A; 568 C; 571 G; 734 T; 0 other;
     gccgtagcca tgatattata cctaaatttg cgaaagtggt acattttatc aagactgctg        60
     cagctaataa gattactcgt aatgcgagtt tggcacttat aagggaaaga attagatata       120
     ctcgcaggaa gttggatttg atttcagaag agctgtatca cttacatctt aagatagcag       180
     ccagcctccc accttttact tgggaatgga ctgacggcat aacatgggca aaatcggact       240
     ggactcatca agtttccact tcaagacaag ttgcgaagtt cgaccgtttg accactcagt       300
     cgcagcaaga tgtaagtttt aaaacctctg tttttaattt tacaaataag gatttggaca       360
     atgcgacgat gtcagtttta ggaaagggtc tgaactttgc tcctacgcca aagcccttgc       420
     cgttaacatc ttttatctca ggtattgaag aagctgttag aaagttacct ggtgactctg       480
     ctgaagaaat aagacgcgaa gcgtgccgtg cactcacaag atcccgtcca cagaaaagta       540
     atttatcttc aactgaaaga gctgcactac gtaatctccg gaatgattca cagaccttgg       600
     ttcttcctgc agacaagggg aatgccacag ttttgcttcc aagagacgtc tacgttgaga       660
     agatgcacaa cctactggat gaatcaacat atcgtaagat tgacaaggac cccacatctc       720
     gtgttgagag gaagactgca tcacttctga acgctagttc tctacctaaa gatgttgcaa       780
     acaaattgaa gggccgcagt tcggtgcccc cccagattat atggccttcc aaaggtacac       840
     aaagttttgc aaacgtccag ttcagaagaa attgaaaatc ttaaaccaag tttggagcat       900
     atattgaaag tgttgacttt tcgaccaata gttagtaata taggtgcacc aacgtattca       960
     ttggcaaaat atctagcctc attgttgaga ccacatgtgg ggaaatgtga acatcatatc      1020
     cgtaactcgt cggatttcat cagtaggtta aaaaacctga aactcaacag cactgattta      1080
     ttagttagtt ttgacgttgt ctcgttgttc accaaagtac ccttggctga ctctttgtct      1140
     ctccttagca acatgtttga ggatgatata acagctttat ttaagcatgc actaacctcc      1200
     acttactttt tatttcatga acaatacttt gaacagattg acggtgtcgc tatggggagt      1260
     cctctttctc ccctagtggc taatttgttt atggaggatt ttgaagaaaa agccctcaat      1320
     tcagcaacat taagaccgac ggtcttctgg agatatgtgg acgacacatt catagtgtgg      1380
     ccccacggag aggataaatt gacagaattt ttagaccatc ttaactccat tcatgaaaac      1440
     atcaagttca ctatggagcg ggagaagaat ggctgtttac cgttcctgga tgttctggtt      1500
     cgacgcaaag aggatggatt cctaggtcat tgcgtatatc gcaagcccac ccatacagac      1560
     ctttatttgc aggcgtccag ctgccaccat ccttcgcaaa ctatgagtgt actgaaaacc      1620
     ttggttcaca gggctcaggt agtgtctgat gctgacagcc tgcaggatga actcctgcac      1680
     ctggaggcgg ttttcaagaa aaatggctat tcgcaacatc agattaagaa agccttgcaa      1740
     ataaaaacac cagaaaaatc acaggagaaa gatgaagagg aaagggaagt gaaatctaca      1800
     gcctttctcc catacgtggg taatgtttct tcaaaaatag ccagaatcat gaagaaacat      1860
     aaagtggatg tgatctttcg cccaccagct aagacctcag ctcttctggg atctgtcaaa      1920
     gatgatctgt tattgcgaaa agcgggggtt tatgaaatcc cttgtgagtg tggaaaacgt      1980
     tatataggtc aaaccacgcg cactgtgcag gaacgatgcg ttgagcacca gcggtataca      2040
     cgccttcttc agtccaacaa gtctgcagta gccgaacatt gtatttctac tggccattcc      2100
     atgaattaca aagaagtaaa gattttaacc acagcttcta ctttctggga ctcagttgta      2160
     aaggaagctg tacacataca actggcggac cacctgctaa atcgtgacga cggatttcat      2220
     cttgacaatg catggaagcc acttatatca cgccttcgtt ctgaaagaat gtctgcgtct      2280
     tcacttccga ttgatgttac cacttttaat gattaattat tcatttgtaa gcactgtgga      2340
     tacgtaacag ctctgtttat gtttgcactc agtgctcaca tgtttatctt tgaagtatat      2400
     attcatctat gactagcgca gcagttacga atgtgatatc ttcgagcatg cgcagtctaa      2460
     tcctcagtag ctttgcatca cgtgatttac cgtataaata ggcacgcgca gacgctgaga      2520
     actcagtctt ggactcgcct tgaagatggc tgtaaggttt gcagccgaaa tatcggacga      2580
     agaattgtcg ctgtcccggg tgcactcccg aaagatgatg gaatattatg tccgccggga      2640
     aaattcaaga atcaca                                                      2656
//
ID   Penelope-109_LMi repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-109_LMi.
XX
NM   Penelope-109_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1312
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 149-149 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1312 BP; 392 A; 342 C; 310 G; 266 T; 2 other;
     gttctcacca caacctactt cagatacgcg gggattttat gagcagttgt gtttagccat        60
     gggctctcca cttgcgccag ggatagccaa tctctacatg gaacacttcg aggaggtggc       120
     gctaagaact gcacgactca aacccaaaca cctctaccgc tatgttgatg acaccttcat       180
     catctgggaa catggtagag aagctctgac tgagttctgg aaccatctga acagcataca       240
     tccaaatata cagttcacaa tggaactaaa gacaggatgt cttccatttt tagacattct       300
     tataaaaaga aaagcagatg gcactctggg acatgcagtc tacagaaaga agacccacac       360
     agagctctat cttcatgcat ccagctgcca tcatccagca cagcgcagca cagtgctttc       420
     aacgctggtt cacagagcac gtgctatttg tgaccaagac agccttccag ctgagctgca       480
     acacctcaga gacgtgttcc ggcaaaatga ttatagtgaa gcacagatta gatgtgcact       540
     gaagaaaaag actggtacag ccgtccacga agaagaggaa gaggaaaggg cagtgaaact       600
     cgcctttatc ccctacatag ggcctccatc agcccaaatt gcgagaatcc tgcgtaaaag       660
     cgacgttaag acaatctttc gacctccacc aaaaacgaaa gatttgattg gctcagtaaa       720
     agataaacta caactgcaga cgcctggtgt atatagcatc ccctgtgagt gtggccttca       780
     gtacattggg caaacacagc gctgcatctc acagcgctgc caggaacata ttagatgtgt       840
     ccgtctgggc cataaggaca agtcagcagt cgcggaacac agcctcaatg atggacacac       900
     ctttcagttt gagaaaacgg aaatgctatg ccgagcmagt ggcttctggg atagcataat       960
     aaaagaatmt gtggaaataa ggctacatga caatctcgtc aacagggacg agggctacca      1020
     gctaagctcg gcttggaacc ctgcaatagc agccatacgc tgagaccgcg cccagaagtt      1080
     gagccttcga gagtctgggc aagactgaag atgccgtaag cccaaccaac ggccagcggc      1140
     agcgcttgcc ccggcggcta tataagagcg acgcccgccc gccatcgaca cttcgcctga      1200
     agatgatgag actgtcactc atcgaaacgt tgcggaattt caacgcagcc acccggatgg      1260
     aaacccgaga agatttcgtc agtgccatac gccgggaaag cctacattca ca              1312
//
ID   Penelope-10_CoFl repbase;    DNA;    INV; 2491 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-10_CoFl.
XX
NM   Penelope-10_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2491
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2415-2415 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1938
FT                 /product="Penelope-10_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="LLKPLEAALAVNKKIEVDTSKKIRQTYLQVIKKNIFN
FT                 SKKISYFDKTINNHLNETKMFLKEHREILVTRADKGGATVVINKTDYINKV
FT                 ERALGDSMYYHRLDSQKRANHLTRIINSTKKLVDVWDNRGVFDTVEIDRPD
FT                 VNQLSGCNLAKAYGLIKVHKPGLPVRIIVSAIGSPTYTLDKWFSKFFNKFC
FT                 KRSPSSLKNSYDLKSTLRDLIVPHNYLLVSFDVVSLYSNLPFSLIKKSVEE
FT                 KIGRTLDSMHLDRKEFLDGLDFLINSNYFTFNNHTYKQTCGTPMGGCTSPW
FT                 IAEIVLESLEKSVLPRCRDSCLMYRRYVDDCLLIIQSDSVDTVLGIFNDFN
FT                 PFIQFTVEREDNGVIPFLDVTITRIADSVCEIDLYSKPSSSGRLLNFFSHN
FT                 PVSQKIAIVFSLIDKCFKLADPKFRSRNIDRARRALTMNGYPTYFIEKYIK
FT                 ARISIINRFNKNKNHINSLTNCEMSPPVMEGSSRLSFIILPFYPRLEKTLR
FT                 SFFSKHKLKTIFQNSNKFTNIIRLGKDQTPKLKRSGIVYRIECECGLFYVG
FT                 QSKRRLATRIDEHKRMVHKCDKNSVIAAHCSEFSHTFKFDEVKILDQEXNK
FT                 FKREFSEMLYISYFNRNVNRKLDTNKLHDHYKSFLYELRDRMHGWRCS"
XX
SQ   Sequence 2491 BP; 781 A; 464 C; 456 G; 789 T; 1 other;
     ctccttaagc cactggaggc tgccctagct gttaataaaa aaatagaagt tgataccagt        60
     aaaaagatta gacaaaccta tcttcaagta attaagaaaa atatttttaa ttctaagaaa       120
     attagttatt ttgacaaaac cataaataat catttgaatg agacaaaaat gttcttaaaa       180
     gaacatagag aaattttggt taccagggcc gacaagggtg gcgccaccgt tgttattaat       240
     aaaacagact atattaacaa ggttgagagg gcactcggtg acagtatgta ttaccatcgg       300
     ctcgatagtc aaaaaagagc taaccatctc actcgtatta tcaattccac aaaaaaactg       360
     gtcgatgtat gggataatag gggtgtcttt gataccgttg agattgaccg gcctgatgtc       420
     aatcaactga gtggttgtaa cttggccaaa gcgtatggcc ttattaaggt acacaagcct       480
     gggctccccg tgagaatcat tgtttccgct attggttctc caacctatac actcgacaaa       540
     tggttttcga aatttttcaa taagttttgc aaaagatcac ccagttcctt aaaaaattcg       600
     tatgatctaa aatcaacgct gagggatctc attgttccac ataactatct attggtctct       660
     tttgatgtgg tttcccttta ctcaaacctc cccttctctc tcatcaaaaa aagtgttgag       720
     gagaagattg ggcgtactct cgacagcatg catctagaca gaaaagaatt tcttgatggt       780
     ttagacttcc taatcaactc caactatttc actttcaaca atcatacgta caaacagaca       840
     tgtggtactc ccatgggtgg atgtacatct ccttggattg cagaaatcgt tttggagtcc       900
     ctggagaaat ccgtgttgcc gagatgtaga gattcttgct tgatgtatag gagatacgtg       960
     gatgactgtc tcttgatcat ccaatcggac agtgttgaca ctgttttggg aatttttaat      1020
     gatttcaacc ctttcataca gttcacggtt gaacgtgaag acaacggcgt cattccgttt      1080
     cttgacgtca ccatcactcg tatcgcagat tccgtttgtg aaatagattt atatagtaag      1140
     ccttcatctt ctggtagact tctaaacttt ttctctcaca acccagtgtc acaaaaaatc      1200
     gcaatagtct tttcattaat tgacaaatgt ttcaaactag cagatccgaa gtttaggtcg      1260
     cggaacatcg atcgagcgag acgagctctt accatgaatg gttaccctac atatttcata      1320
     gaaaaataca ttaaagccag aataagtatt atcaatagat ttaataaaaa caaaaaccac      1380
     attaactcac tcaccaattg tgagatgtcg ccaccagtca tggaaggtag ttctagactc      1440
     tcattcatta ttttaccctt ctatcctcgt ctcgaaaaga ctctccgttc atttttttct      1500
     aaacacaaat taaaaactat tttccaaaac tctaataaat ttacgaacat aatccgacta      1560
     ggtaaagatc agactccaaa attgaaaaga agtggcattg tttacaggat agagtgcgag      1620
     tgcggtttgt tctatgtagg ccaaagtaag cgcaggttgg ccacacgtat tgacgaacat      1680
     aagagaatgg ttcacaagtg tgataaaaat tctgtcattg ccgcgcattg ttctgagttc      1740
     agccatactt tcaagttcga tgaagtcaaa attttggacc aagaaaasaa caaatttaaa      1800
     agggaatttt cggagatgtt atatatttcg tacttcaacc gtaatgttaa cagaaaacta      1860
     gataccaata aactacatga tcattataag tcctttttat atgaacttag agacaggatg      1920
     catgggtggc gttgctcttg acgagtgttg cttgataggt gtgccacttg atggccacgt      1980
     ttctgttggt ccgtgtttcc ttgtacatac attgaccgtg ggtgcaccct tatgtggtga      2040
     caagacctta acaccatatt actattttta atatcttcca gttacatgtg ctgagtcagg      2100
     atgtgactta tattgtagat aacttaactg tacatacatt ttgactgata aagtttataa      2160
     tattaagatt atttaattat tagtattcca ttgccgtggt tatgactgac tagtctttat      2220
     cagtcatgct gcgtttggca ttttcatgtt cgcatctgca taggtgactt atattttcat      2280
     ttaatgtaat ttgtcataat gttttttata ttataaatat tgtaaattgt acagttccct      2340
     gaagagggag tcaggatgac tccgaaatat tggatcacat tgtccaacta atatatgaaa      2400
     taaatagcca tgctccaaga ttccaagttt tttcatttaa atttccttaa ttatggcaaa      2460
     ggagcaagaa gacagtagtt ttattatcaa a                                     2491
//
ID   Penelope-10_FoCa repbase;    DNA;    INV; 2297 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-10_FoCa.
XX
NM   Penelope-10_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2297
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2744-2744 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..2091
FT                 /product="Penelope-10_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MKKFENLSRKKLVLEXRSHSTQRRSXHNHDANKEIQG
FT                 MKRSVLNLSQRQLTKDETKALQLGLNFALPHFKHKDLLIEAGINIELCMQD
FT                 FENSENYKNHIRSGIARILHSEVNKPDEFTKSFDWLKPICTNLKKDQNIVI
FT                 LPADKGNMTVIMDKTNYETKIEELLSDPSYSPLPNDPTSKLEAEINNISKN
FT                 LLKMKKLDKSQHQNINPTNSKIPRFYGLPKVHKPGLPFRPIVDFRSSPSYN
FT                 LAHFLNKILKKITSNFPTHIKNSYEFAKDIKSFTVPPGYELVSFDVTSLFT
FT                 RVPVKETLTIIKKRLDTSTTWKAKTKLSADEILKLLQITINSNYFTWKNVT
FT                 YKQNDGTPMGSPISGEFAEFFLQELEKKVVLKHPDIKLHKRFVDDCFSCIK
FT                 SGTKDRILHDLNSFHPNIQFTCESEIDKKIAFLDIIITYNNDGQIQRQVYR
FT                 KPTHTGRYLNYSSYHHPSQKIAVIDALVYRALAISDDQFLKDELTFVATSL
FT                 TNNGYPKSLINQRISRMKKKFSNTTLQPNGAEXGEKKPRIILPYMGPLTHR
FT                 LTGYLRRKLQCEFGYLTGKKMKQFICDYKENPPPDLVGIYQILCSCNDKYI
FT                 GETSRPLVKRIKEHLNDIKKKNVKSAVALHILENPSHRITEDSASLLIAER
FT                 RNFHRKFLESLHIRKTTNAINQDNGMNLNPIWSSLMLPLI"
XX
SQ   Sequence 2297 BP; 879 A; 533 C; 331 G; 542 T; 12 other;
     aacgccacga tccgagasaa acaaatgaag aagttcgaaa acctctcacg aaaaaaatta        60
     gtcctcgaag akagatcaca ctccacacaa cgccgatctm cacataatca tgatgcgaac       120
     aaagagattc agggcatgaa aaggagcgtc ctaaatttat cacaacgwca actcaccaag       180
     gatgaaacga aggcactcca actwggatta aacttcgccc tcccacattt taaacataaa       240
     gacctattaa tcgaagcggg gataaacatt gaactttgca tgcaggattt tgagaatagt       300
     gaaaactaca aaaatcacat aagatcaggt attgcaagaa ttttgcactc agaagtcaac       360
     aaacctgatg aattcaccaa atcattcgac tggttaaaac caatatgcac aaatctcaaa       420
     aaagatcaaa atatcgtcat cctacctgct gataaaggca acatgactgt gattatggac       480
     aaaacaaatt atgagaccaa aatagaagaa ctactctcag acccgagtta ctctccacta       540
     ccaaatgacc ccacctccaa attagaagct gaaattaaca atatatcaaa aaatctactc       600
     aaaatgaaaa aactagacaa atcacaacac caaaatatca atccaacgaa ctcaaagatt       660
     cctcggtttt atggattacc gaaggtacac aaaccaggac taccgttccg acctatcgtg       720
     gactttcgtt cctcaccttc ctacaatctt gcccattttt tgaacaaaat tctgaagaag       780
     atcacgtcaa atttcccaac ccacattaaa aattcatacg aattcgccaa ggatatcaag       840
     agcttcactg taccccccgg atatgaactc gtctcattcg acgtaacttc tttattcact       900
     cgagttccag tcaaagaaac tctaacaatc attaagaaaa gactagatac atcsacaacc       960
     tggaaagcaa aaaccaagtt aagtgcagat gaaatcttaa aattactaca aatcacgata      1020
     aactcgaact attttacttg gaaaaacgtc acatacaaac aaaatgacgg tactccaatg      1080
     ggcagcccma tctccggwga gttcgcagaa ttcttcctcc aagaactwga gaaaaaggtc      1140
     gtcctmaaac acccsgacat aaaattacat aaacgattcg tggatgactg tttctcgtgc      1200
     ataaaatcag gaacaaaaga cagaatctta catgacctca actcattcca tccaaacata      1260
     caattcacct gtgaatcaga aatagacaag aaaattgcct ttctcgacat cataattaca      1320
     tacaataatg atggacaaat acaacgacaa gtttatcgaa aacccactca cacagggaga      1380
     tacctaaatt actcatctta ccaccaccct tcccaaaaga ttgctgtaat tgatgcttta      1440
     gtttacagag cattagcaat ttctgatgac caattcttaa aggatgaact tacctttgtg      1500
     gccacctcac taacaaacaa tggctaccca aaaagtctca tcaaccaacg aatatcaaga      1560
     atgaagaaaa aattctcaaa tacgacactc caaccaaacg gcgctgaaga mggagaaaaa      1620
     aagccaagga tcattcttcc atatatggga ccgcttaccc accgattaac tggttacctc      1680
     cggagaaaac ttcaatgcga atttggatac ctcacgggaa aaaagatgaa acaatttatt      1740
     tgtgattaca aggaaaaccc acctccagac ctggtaggaa tttatcaaat tttatgctca      1800
     tgtaatgaca aatacatagg agaaaccagt cgacccctcg tcaaacgcat caaagaacac      1860
     ctgaacgata tcaaaaagaa aaatgtcaaa tcagcggtag cattacacat tttagaaaat      1920
     ccaagtcatc ggataacaga agactcagca agtctcctta ttgccgaaag aagaaatttt      1980
     cacagaaaat ttcttgaaag tttgcacata agaaaaacca ccaacgccat aaaccaagac      2040
     aatgggatga acctcaaccc catctggtca tcattaatgt tgccacttat ttaaattcca      2100
     taactacatt tgtataattc aacaaattat catttcttga caatttgaga actgcactgt      2160
     atttcaattc caaacaattg ttaaaattcc tcattttcct gatgatgatg cgagtttagc      2220
     atcgaaagct cgaataaact gcttttataa accacaccca tgtattccga cgaagcctcc      2280
     tcaaacaata aatgttc                                                     2297
//
ID   Penelope-10_LMi repbase;    DNA;    INV; 2724 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-10_LMi.
XX
NM   Penelope-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2724
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 221-221 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           26..2521
FT                 /product="Penelope-10_LMi_1p"
FT                 /translation="MFSVVENETSGRGSFIDRPRQLSPEVFTDEDAGRESL
FT                 HGMIRRLYGEEMSVKVRRLENLRKKKGQQLCSLTFLLRCRDTGIVPKFLKV
FT                 RRMFNSAQANRIYTRMELALLRERIHQTRRGLAISDSQLLNLHLSISNTMQ
FT                 FGHWNIVDSLTFRSMEISTEVSSNRQKKKFDRLQEGRQETPIPNNSQTVIN
FT                 LSDKELSKEELSVLTKGGNFAITPSKVPIEDIIANIEAGIRQLPSHSADEI
FT                 RMETSRILRKAKPPSSNLSQGERKALREISADKNVIIVAADKGNATVLLNT
FT                 EDYHKKISDLLESGTYKKLKKDPTTNVLNVTNRLIKQSSIPTEVKKYLCKT
FT                 EAYPPRLYGLPKIHKVDVPLRPIVSAIGAPTQELARHLASLLQPYIGKTES
FT                 HIKNSLHFIEKLKEITVGPNDILVSFDIVSLFTMVPVDEALSHIVDMFPSD
FT                 IVTLFKHCLSSTYFQYNGEFYAQTDGVAMGSPLSPVIANFFMEYFEHQALQ
FT                 SAKKRPSKWYRYVDDTFVIWNHEEEDLNDFLVHLNSINPKIKFTMEKENNG
FT                 QLNFLDVSVIKRADGTLGHKVYRKATHTDRYLHKNSNHHPRQKRGVIKTLV
FT                 DRANNICEPGYLQEELNHLRQAFAKNGYTNNEINRVLHPSSKMHKNRRQQQ
FT                 PSAGKVFLPFIHNITDRIGKVLAKFRVETIFRPTKKISECLRSTKDARHPL
FT                 ATPGVYKIPCSCGKVYIGTTKRSINTRLTEHKRNCRLGQIDKSAVAEHVFT
FT                 EGDHEIKFGETSVLARTSHYYTRMYREAIEIHKHQYNFNRKEEGLKLDKIW
FT                 RSTLHQSRDNRLLAIERTGDSQRQPHIDAT"
XX
SQ   Sequence 2724 BP; 883 A; 570 C; 611 G; 660 T; 0 other;
     ccagtcgtcg actcaacctc ggaagatgtt ctccgtagtc gagaacgaaa cgtcagggag        60
     aggaagtttc atagatcgac cacggcaact cagcccggaa gtgtttactg atgaagacgc       120
     cggccgtgaa agccttcatg ggatgattcg acgcctctac ggggaggaaa tgtctgttaa       180
     ggtacgacga ctggagaact tacgcaagaa gaaaggtcag caactttgct cacttacttt       240
     tctgctacgc tgccgtgata ctggtatagt tcccaagttt ttaaaagtga gaagaatgtt       300
     taattcggca caagctaacc gtatttacac tcgtatggaa ctggcattac tacgtgagcg       360
     gatacatcag acacgacgag gactggcgat atcagatagt caactactaa acctgcatct       420
     atctattagt aatacaatgc agttcggtca ttggaacata gtggacagtt taacatttag       480
     atccatggag attagtacag aagtgtcctc caataggcag aagaagaagt ttgatcgtct       540
     gcaagagggt cgacaagaaa caccgattcc aaacaattcc caaacggtta ttaacttatc       600
     ggataaagaa ttgtctaagg aagaactttc tgttctgact aaaggaggga attttgcaat       660
     tactccgtcc aaggttccta tagaggacat tattgcgaat atagaggcag gaattcgtca       720
     gttaccatca cattctgccg atgaaattag aatggaaacc tccaggatat tacggaaagc       780
     taagccaccc agcagcaacc tgtctcaagg ggaaaggaaa gcattgcggg agatcagtgc       840
     tgacaagaat gttattatag ttgccgctga caagggaaat gctactgttt tattgaatac       900
     tgaagactat cacaaaaaga tcagtgacct tctggaatcc ggcacataca agaagttgaa       960
     aaaggatccc actacgaatg tgctaaatgt caccaatcgt ctgataaaac agtcttctat      1020
     tcctacagaa gttaaaaagt atctttgtaa aacggaggct taccctccga gattatatgg      1080
     tttaccaaag atacataagg tagatgttcc tttgagaccg atagtcagcg caattggagc      1140
     tcctactcaa gaactggcca gacaccttgc ctctttgtta caaccttaca taggcaaaac      1200
     tgagagtcat attaaaaact ctctacattt cattgagaaa ttgaaggaaa ttactgtcgg      1260
     tcctaacgac attcttgtca gttttgatat agtgtctttg ttcactatgg ttccagttga      1320
     cgaagctctc tcacatatag tcgatatgtt cccctctgat atagtgactt tgttcaagca      1380
     ttgtctatcc tcgacgtatt ttcaatataa tggtgaattt tatgcacaga ccgatggggt      1440
     agccatggga agccccctaa gccccgtaat tgcgaatttt ttcatggaat attttgaaca      1500
     tcaagcactg cagtcggcca aaaaaagacc ctcgaagtgg tatcgatatg tcgatgatac      1560
     cttcgtaata tggaatcacg aggaagagga tctgaatgat ttcctggtgc atctaaatag      1620
     catcaaccca aagatcaaat tcaccatgga gaaagagaat aatggacaac tcaacttcct      1680
     ggatgtttca gttattaaac gggcggatgg gaccttaggc cataaggtct ataggaaagc      1740
     cacacatact gatcgctacc tccataagaa ctcaaaccac caccctaggc aaaagagagg      1800
     ggtcataaaa acgctagtgg atagagccaa taacatttgt gaaccaggct acttacagga      1860
     agaactaaac cacttgcgac aggcctttgc gaaaaatggt tatacaaata acgagattaa      1920
     ccgagtactt cacccaagta gtaaaatgca caaaaacagg agacagcaac aaccatcagc      1980
     tggaaaagta tttcttccgt tcattcataa catcacggat cgcattggaa aagtactggc      2040
     caagtttcgg gtggagacta ttttcagacc gactaagaaa attagtgaat gccttagatc      2100
     aacaaaagat gctcgtcatc ccctggccac accaggggta tataaaattc cgtgtagttg      2160
     tggcaaagtt tacataggaa ccacaaaaag aagcattaat acacgtttga cagagcataa      2220
     aagaaattgt cgcttgggac agatcgacaa atcggcagtg gcggaacatg ttttcacgga      2280
     aggagatcac gagataaaat ttggtgagac aagtgtgctg gcgaggacgt cacactatta      2340
     tacacgtatg tatagggagg caattgaaat ccacaaacat caatacaatt ttaatcgtaa      2400
     agaagaagga ttaaaattgg acaagatatg gcgatcgacg ttgcatcaat cacgtgacaa      2460
     tcgattgctc gcaatcgaga gaacaggcga tagccagaga cagccacaca tcgacgccac      2520
     gtgacgtgag gtggcgccct ctacgatctt atataaggag cggcctcagc ccccagaagc      2580
     cagtcgtcga ctcaacctcg gaagatgttc tccgtagtcg agaacgaaac gtcagggaga      2640
     ggaagtttta tagatcgacc acggcaactc agcccggaag tgtttactga tgaagacgcc      2700
     ggccgtgaaa gccttcatgg gatg                                             2724
//
ID   Penelope-10_TrVa repbase;    DNA;    INV; 4154 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-10_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4154
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 635-635 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. This family is inserted in (TA)n
CC   microsatellites. It includes 552-bp terminal direct repeats.
XX
SQ   Sequence 4154 BP; 1121 A; 708 C; 804 G; 1518 T; 3 other;
     tctggtgtcg tatacaaaat atcctgcaac gactgtgata tcagttacat tggtcaaact        60
     cgtcaattac ttgggaaaag attgaatggt cataaatatg atcagaagga gaagacggca       120
     ttacaccagc atcagaatga cttacagcat acttttgatt ttgaaggagt gagggtattg       180
     acgagggagg ccaatgatta ctcaagagtg ttgtatgaga tgatttgcat tgtgaaagag       240
     agagagtcgg tttgcaacta ccggactgac gttgagaagt tgggggttgc ttaccataag       300
     tttttccgac cacagccacc agagtgagct tccctgaggg tctctctgtg tttttcattg       360
     tctgttgttc tcttctcttt ccgtggttat aggttatgcc agttccatca tggccatgta       420
     ggtgggaact catttgtgtt tttttctgtg tcttttagca attgataaag gtcctgtaac       480
     ggaccgaaac gtcttgtgaa tttcatcact attttagcct tgtgtcccat ttattcttat       540
     ttatttattt attcatcgta ttgggctagt aacatttcta ttcgtattca tctgtgggta       600
     ttgctgatat ttatttcata tgtgtgtttt aattwtgtct ttcacatttg tttctcgcta       660
     catttataac ctacaatttt caggtggcct aaaggccttg ttgtcagttc tcaggtctct       720
     tttcattttt tcaccgttgt tcagttgttg cgttggtttt ttggtgccgt tggttttggt       780
     kattaggcgg tgttgttgcc atatttcgct ctttgtactt ttatttgaaa ttttcgttca       840
     cattgttgcc aagctgcaat gtattctaga gtttttatgt gttttcaaat tgccgtgttg       900
     ccaaatgtgt tttaaattta gactataatt cacaacttac atttccctct tttttttttt       960
     tttttttttt tttttttttt ttttattctg ctcctatgat caccattgct gctatgatgc      1020
     attgtattct agagtaccaa tgtgtctccc tattgccgtg ttgcttacta tgttttaaaa      1080
     ttcatattat aaattttgtg tgttttcaaa ctgccgtgtt gccaaatgtg tttcgaattt      1140
     acattgtaat tcatattgta ttctagagta cttatgtgtc tccaaattgc cgtgttgctt      1200
     aatgtgtttt aaattcatac tgtaattttg tatgtgtttt caaactgccg tgttgccaaa      1260
     tgtgttttaa atttacactg taaatcacat cttatatttc cttcacaatc tttttttttt      1320
     attttttttt tttttttttt tttttttttt ttttttttta atattgatcg gaactttctt      1380
     ctatttattt ttgttcacca tgcaatttta tcgctttgtg caacgtttgc atggccaccg      1440
     tgtagtcaaa tatctaaaag atctaaacag gttcagccgg aatttagtta aaatgaattg      1500
     taagaaggtt ttcttgctta agtgtaggaa acatcgattg attccgaatt tcttaaattt      1560
     tcaggataaa catatacgaa atggtttaag gacacataat aacaagtgtt ctaagatgat      1620
     gcaaaacttt aagtttgcat tgttgaacgt ktgtattgat gatatccatg ccgaaattgc      1680
     tattatttca aggaagctga atgatgtaat gttttttctc cgatctaaac tacctgagat      1740
     cgttgtgctt gattttatta agaacatcac cattaggaac tacaagctca aaatgtccaa      1800
     cgaccaaagg ttggagttaa aactttccaa attgcttcgt actgctcatc aagaatatca      1860
     acagcaattc gcgccgtttc ttttcaaaaa agaggagtgg atgcacaatt tggcagagtg      1920
     taatttgcca gaatatgtta gtcgtgtcct aagtttggga cctcggtttt ctattccttt      1980
     tttcagagag gaaaatgaaa acagttgttt ccaaccagtt cctttggata aaatcatagt      2040
     cggtattgag aacaagatca ggtttgatcc tcccgttgtt tcagctttaa gggataaagt      2100
     tgtgcaagcc ataaatcatt attaccatca ggttaaaaaa gtcggtactt tcgaaagact      2160
     taaggttgcc tcggttcaga aattttcaga ttgttttttc atgaaagcct taaaagacga      2220
     tatcatcaga actcatgcgt ttttaaagaa gaataggcat attatggttg tacgtgcaga      2280
     caagtccaac aaaactgtca tcattaacag ggatgactac agagacaaaa tgcttgctgt      2340
     tttaaacgat gtctccgctt ataaagttat caagcactca ttagttccat cacaaatgag      2400
     taaaaataat ttcattgtaa agcactggtg tgataaaaaa tggatttctg aggccacagc      2460
     agacaactta aaaacatctt ccgggatggt ttcaagaatt tatggtttgc tcaaacttca      2520
     taaagataat gttcctattc gtccgattgt gtcaactatt ggctctcctt attattgcat      2580
     ctcaaagctt ttttctggaa ttttgtctaa cattgttggg aaaactgagt ggtgtgtcaa      2640
     ggattctttc cagttcttca atgaaatcaa cggatttgaa attcctgagg atttccgact      2700
     aatatccctt gatgtcgttt cgatgtacac caacatttca gttgacctag caattaagtg      2760
     tgttaaaaaa cggtgggagg agatcaaaaa tcattgcgct attcctcaag accaatttct      2820
     ttatatgctg gaagtttgca taagctcgac ggtatttcag tttgaggaca aattttacca      2880
     acaggtccaa ggattagcca tgggtgggag tgtttccgct gttctcgcta atattgtcat      2940
     ggaagatttt gagctaacga ttcacagtat tacaccgacg ttaattttat tttataaacg      3000
     gtttgtggat gatttatgcc tttgcgttca caagaacgaa gtcttaaaca ttttggattt      3060
     atttaacgct caaactccat tggttaaatt tactttggag gaggaaaaga acggttgcct      3120
     caattttctc gacatgactc tagaaaggta taaaaatcgg gtcttatgca aatggtatca      3180
     aaaaccgact gcttcaggga gatatttaaa ctttctttcg gtccagcctt tctgctataa      3240
     gaagaatgtt gtcatgaact tggcacgtcg agttatcggc cttagtgact cccattatca      3300
     tcaagaagtc attggtttgg ggaaaaggct attgatcgaa aattgttatc cgtcgaattt      3360
     tgtagatagg tgttttaaaa aagttctaca cgtcttaaca gctgatgaca acaacgggca      3420
     cattacacct cgggagaaat ttgacactgc caaaattgtt aaattgccat acgtcccatt      3480
     actgtccgag aacttggaag ttgttttaaa acactatggc tacagggtgg tccatcaaaa      3540
     ttacaataat tttcaatttt tattttctcc cttaaaatct aaacctgacc ctttgcaatt      3600
     atctggtgtc gtatacaaaa tatcctgcaa cgactgtgat attcagttac attggtcaaa      3660
     ctcgtcaatt acttgggaaa agattgaatg gtcataaata tgatcagaag gagaagacgg      3720
     cattacacca gcatcagaat gacttacagc atacttttga ttttgaagga gtgagggtat      3780
     tgacgaggga ggccaatgat tactcaagag tgttgtatga gatgatttgc attgtgaaag      3840
     agagagagtc ggtttgcaac taccggactg acgttgagaa gttgggggtt gcttaccata      3900
     agtttttccg accacagcca ccagagtgag cttccctgag ggtctctctg tgtttttcat      3960
     tgtctgttgt tctcttctct ttccgtggtt ataggttatg ccagttccat catggccatg      4020
     taggtgggaa ctcatttgtg tttttttctg tgtcttttag caattgataa aggtcctgta      4080
     acggaccgaa acgtcttgtg aatttcatca ctattttagc cttgtgtccc atttattctt      4140
     atttatttat ttat                                                        4154
//
ID   Penelope-110_LMi repbase;    DNA;    INV; 1616 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-110_LMi.
XX
NM   Penelope-110_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1616
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 150-150 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1616 BP; 446 A; 470 C; 399 G; 301 T; 0 other;
     ggtgcctctg aggccaatct tggacaccat caactctcac agttacggac tagcaaaaca        60
     cctgacgacg ctgcttaaac tccttgtcgg acactgcagc caccatgtaa aaaactcagc       120
     cgaattcgtg acagtactca gggatatacg actacaaaag gaagatatcc ttgtgagctt       180
     cgacgtgacg tcgcttttca cgaaagtgcc cctctcggac tccttggcac tattagctga       240
     gcacttcgag ccacaaattg tcagactgtt cgaacatgca ctgaccacca cctactttca       300
     gtgcaatgga gaattctacg agcagatcga tggcgtggcc atgggttccc cactagctcc       360
     agcgattggt aacctctata tggagcactt cgaggaggtg gccctgcaaa ccgccaaaca       420
     gaaaccaaag cacttcttcc gctatgtgac gaaccttcgt ggtgtggggg ctggcaaaca       480
     ggcactggat ggctttctga acacctcaac aacatccatc caaacatcaa atttacatgg       540
     aaatgaagaa aatggatgtc tcctttctcg gacatcctaa tcaagaagaa gccagatggt       600
     tcactaggcc atacagtttt taggaagaag acgcatacag acctatacct tcacgcaaca       660
     agctgccacc atccagcgca gagacagaca gtgctgacaa ccctcgtaca cagggcgcgc       720
     gccatctgcg acagagaaag ccttccctcc gagctgcaac acctgaggga ggtcttccgc       780
     caaaacggct acagcgaggc gcaaatcaac agggcgctca aaaaggagaa gaggcagtgg       840
     cagttgcgga agaggaggaa gaagacaaac gactcgcgtt cttgccatac gtgggaccac       900
     tttcggccaa gatcgcacgc ctcctgggca gatccaacat caaaaccgtc tttcgtccac       960
     caccgaagac gagggagcta ctaggttccg ccaaagaccc gttgaaactc aacacaccgg      1020
     gaatttacag catcccatgt gaatgtggca agcaatacat cggccaaaca cagcgttgta      1080
     tttcaaaacg ctgtgaggag catattaggt gtgttcgact agggcacaca gcaaaatcgg      1140
     ccatcgctga acatagcata aacgaagcac acactttcga cttcgagaag acgaaggtgc      1200
     tgtgccgagc atcgggtttt tggcagagtg tgatcaagga atccctagaa ataaggattc      1260
     atgataacct agtcaacagg gacgaaggct accaacttag cgcagcgtgg aatcccgcga      1320
     tagctgcaat ccgtcgggag cgcatccgcc accgttctct gccgcagacg caggcagaat      1380
     gacctcaccg agagtcgacc gcgcgccgcc gctaccccca ccaccgcgcc ccggccgcca      1440
     acccaccgta gcctcccgtg gtccagtgga gggggggggg gggcaccacg ggtataaaga      1500
     tccccgcact ccgctcatct cgccacttcg cttgaagatg ggtagtatga cacttcccga      1560
     aacgtcgcga tccatcaacg ccgccacccg gctggagacc cgagagatct tcatca          1616
//
ID   Penelope-111_LMi repbase;    DNA;    INV; 2893 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-111_LMi.
XX
NM   Penelope-111_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2893
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 261-261 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(170..835,825..1055,1059..1196,1200..1340,
FT                 1307..2554)
FT                 /product="Penelope-111_LMi_1p"
FT                 /translation="MIRLQARNMMDQSIRRENFKIHIRNLYGEEMAVHVQS
FT                 LDKLRNKRARLLSSLCFLLKCRDNGFIPKFARVTHFIKTAAAKNITRKASL
FT                 AIVKERICFTRRELDLISRQLYHLHLEMASSLPPFTWEWADAVTWAKADWA
FT                 HNESSSRQSSKFARLSAESPQEGTFRRTVANFTDSVLDNATLSVLGKGLNF
FT                 APTPKTPPLADFISAIEELLDLFPATQLKNQARIRREHAAAYESDSSGEQY
FT                 FFQRKAALRKLCEDPHTVVLQADKGNATVLLPRNIYNEKIYSLLVVYISED
FT                 RQDPTAKKEKHSFVEIFYTPEVIKRLNPHSSVPPRLYGLPKLHKEGLLTSD
FT                 CQYRCTNLRLSTTSASLLRPFVGKCPHHIRNSADFIGRLKSLDSTIRTYTE
FT                 VSRLHNSDLLVSFDVSLFTKVPLMDSLALIGRRFKADITALFHHCLSSTYF
FT                 LFNNEYFQQIDGVAMGSPLSPLVANFFMEEFEEKALESAEFKPTVFWRYVD
FT                 DTFIVWPHGEEKLAGFLKHLNSIHKNIQFTMEVEKDRCLPFLDVLVTRRTD
FT                 GSLGHSVYRKPTHTDLYLQATSCHHPAQTTGVLRTLVHRAHVVSDKDSLPK
FT                 EMEHLQSVFRENGYSSRQIRTALTRKKLNNNKKKNKEVIRSRAFLPYVGNL
FT                 SSKIGRILKKHCVKVIFRPPAKISALLGSAKDDLGLRKAGVYKIPCQCGQS
FT                 YIGQTTRTVRERCVEHERHTRLLQPNKSAIAEHCISTGHSMDYSATKILAT
FT                 TRSFWDSIIKESVEIRLTEDLINRDGGFQMDKAWDPVISLIASQRHRSTSS
FT                 ATSDKK"
XX
SQ   Sequence 2893 BP; 808 A; 720 C; 666 G; 698 T; 1 other;
     cagagcgcgc caatttcgac agggggcgcg ctaggtacct cctcactgcc aggcgccgcg        60
     cgccaatctt cagtatatat agaacgacgc acaccggtaa tcttcagtct cgtgctcacc       120
     ttaagatggc tgcacgtttg tcggccgaaa tatcgttgga agacgtcaga tgatccggct       180
     gcaagcccga aatatgatgg accaatcaat acgtcgggaa aacttcaaga tacacatcag       240
     aaacctttac ggggaggaga tggcagtaca cgtccagagt ttggataagt tacgtaataa       300
     gcgagcaaga ttacttagtt ctctgtgttt cttactgaag tgtcgggaca atggctttat       360
     cccaaagttt gccagagtga cacattttat caagaccgcc gccgccaaga atattactcg       420
     gaaggctagc cttgctatag taaaggagag gatttgtttc actcgccgtg aactggattt       480
     gatttcaaga cagctgtatc acctgcattt ggaaatggct tccagtcttc ctcctttcac       540
     ctgggagtgg gctgacgcag ttacttgggc caaagcggat tgggctcaca acgagtcatc       600
     ctctagacag tcatcgaaat tcgcacgtct atcggcagaa tcaccacagg aaggcacttt       660
     tcgacgcacc gtggctaatt tcacggatag tgttttggac aacgcgacac tgtccgtact       720
     cggaaaaggg ctcaacttcg ctcccacgcc taagactcca cctcttgcgg atttcataag       780
     tgctattgaa gaactgttag acctcttccc agcgacgcag ctgaagaatc aggcgtgaac       840
     atgccgccgc ttacgaaagc gactcctctg gagaacaata tttcttccag cgaaaggccg       900
     cacttcgcaa actatgtgaa gatccacaca ccgtggttct tcaagctgac aagggcaacg       960
     ccacggtact cctgccacgg aacatctaca acgagaagat ttacagcctc ctagtggtct      1020
     acatatcaga agatcgacag gatccgacgg caaagtagaa agaaaaacac agctttgtcg      1080
     aaatcttcta cactcctgaa gtcatcaaaa ggctgaatcc gcacagctct gttccaccga      1140
     ggctttatgg tcttccgaag cttcacaaag agggactcct tacgtccgat tgtcagtaat      1200
     atcggtgcac caacctacga cttagcacaa catcggcttc gctactgaga ccatttgtgg      1260
     gcaaatgtcc acaccacatt cgtaactccg ccgattttat tggtagactg aagtctctcg      1320
     actccacaat tcggacttat tagtgagttt tgatgtctca ttatttacta aggttccact      1380
     gatggattca ctggcactca ttggcaggag gttcaaagct gacataacag cactgttcca      1440
     tcattgcctg tcctctactt atttcttatt taataatgaa tactttcaac aaattgacgg      1500
     tgttgccatg ggaagtcctt tgtcccctct ggtagcaaac ttttttatgg aggaatttga      1560
     ggagaaggca ctcgagtcgg cagaatttaa accgacagtt ttttggcgtt atgtggacga      1620
     cacatttata gtttggcccc atggagaaga aaagctcgca ggattcttga aacacctgaa      1680
     ttccatccac aagaacattc aatttaccat ggaggtcgaa aaagacagat gtctgccgtt      1740
     tctggatgtc cttgtcactc gaagaactga tgggtctctg ggtcactccg tctaccggaa      1800
     gcccacacac acagatctat atctgcaggc gacaagctgc caccaccctg cacaaaccac      1860
     aggtgtgcta cgtactctgg tgcaccgggc acatgtggta tctgataagg acagccttcc      1920
     taaagagatg gaacatttgc agtcagtctt cagggaaaat ggatattctt cacgccagat      1980
     ccgcacagct ctaacgagga agaaattaaa caacaacaaa aagaagaata aggaggtaat      2040
     caggtccagg gcgttccttc cgtatgtggg caacctctct tctaaaatag gaagaattct      2100
     aaaaaagcat tgtgtgaaag tgatattccg accacctgcg aagatctcgg ctttgcttgg      2160
     ctctgcgaag gatgatttgg gattgaggaa ggcgggagtt tacaagatcc cttgtcaatg      2220
     tggtcagtcc tacattggcc aaactactcg cacagtacga gaaagatgcg tggagcatga      2280
     gcgccacaca cgtctactgc agcccaacaa atcagccata gcagaacact gtatttccac      2340
     gggacactcc atggattatt ctgcaacaaa aattttggca acgacaagat ccttttggga      2400
     ttcgattatt aaggagtccg tkgaaatacg gttgacagaa gacctgatta atcgggatgg      2460
     cggatttcaa atggataaag catgggaccc tgtaatttct ttaattgctt cgcagagaca      2520
     taggtctaca tctagtgcaa catctgacaa aaagtgattt ccttcgacca ccgcgcttaa      2580
     gatgcacgaa agcgcattcc gacagatggc gcgaatgtaa gtacaccatt acgcagacgc      2640
     ggcccgcttc taccacagag cgcgccaaat tcgacaggcg gcgcgctagt acctcctcac      2700
     tgcgcaggcg ccgccgcgcc aatcttcggt atatatagaa cgacgcacac cggtaatctt      2760
     cagtctcgtg ctcacctgaa gatggctgca cgtttgtcag ccgaaatatc gttggaagac      2820
     gtcaacatga tccggctgca agcccgaaat atgatggatc aatcaatacg ccgggaaaac      2880
     ttcaagatac aca                                                         2893
//
ID   Penelope-112_LMi repbase;    DNA;    INV; 3324 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-112_LMi.
XX
NM   Penelope-112_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3324
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 262-262 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(283..828,813..1163,1117..2394,2106..2651,
FT                 2655..2894)
FT                 /product="Penelope-112_LMi_1p"
FT                 /translation="MSSAPMKVKRRTGIIWLKQEIRDLYAKKQSLNNELFK
FT                 THLELANSFTIPAQFEEITEREKAHIQKLIQEKQEKQNSKLNKIINQTHPP
FT                 TENYHHNQKHNFHDRIINLTDTNLTKQEKXLLEKGPKHNINTQISHKTIED
FT                 LITESEHIIKEQERLSTPNFNANLTRELVAAEITQIIKTHKTPNTQNTINS
FT                 NNRTPEETTSHKLKRKQDILTRADKGNILVLMKEEDYINKTLDFLKTTNKQ
FT                 IEQRPNSKIPEKHQQTLKITKTIFSKGQIKRMTQKNPKAPTLNSLPKVHKE
FT                 MSRYALSTPYRRCTKKCPDTPCHDFRNAPSYYLAQHTHTLLKKIYTFENNR
FT                 NLENSQELIDKIKNVDIPVTATLISFDVTSMYTCIPIDETINIITHRLRQQ
FT                 GNTPDTHIDEIETILRTITEQNYFVFNKEFYSQQEGLPMGSPISGLLANIF
FT                 MNNLENKIFRYIIQPKKYKVIYWYRYVDDIICLINEPHTTHIKQLHNEINN
FT                 IHPKIHFTLETETDNTLNFLDLTIKRTNNTHEFTIFRKPTTTSTTIHRLSN
FT                 HPVTHKQASFRFLLNRLNRTPISKQNYTQELNTIKQIALENGYDTHIIDRL
FT                 NQQICKKKNNEQVTHTTLDHTQYRTQHTDNDHIPDTTAQHTKGNKWHILTY
FT                 NNKIVHRIGNILKKQGLQIGYRTDNTVLKKLRTQTHQQTNSTDQAYMNSHA
FT                 IHVSQYTLDKLVGISKPDIQNTSEHPHTRHNSTTHKRKQMAHTHLQQQNSS
FT                 QDRQHIKETGTPNRIQDRQHSTEETQNTDTPTDKFNRSGIYELTCNTCQSV
FT                 YIGQTCRNFKTRYSEHLRALKSHSSHSTFADHLIAHNHYPTKIETDLKILK
FT                 SSHNLYHKLTIEENYHIQKAIAEGKSVMNEYTTLCKNTLFHPLNELYRKDD
FT                 TDSNTHTHTHTHTHRQNKHYSNLPPFHWRTAESQLTHVHFNKVNTDEFLKW
FT                 EVIVIEKVRKICVLHVCYVQQRGRRSVCQKKL"
XX
SQ   Sequence 3324 BP; 1477 A; 737 C; 468 G; 641 T; 1 other;
     cacagaggtg ctgaaactag tttgggtgta taataaaaca gtgttttgca tatcagcgga        60
     cctcataccc agaattttta ctgcaaacac ggaaagaata agagctgcaa atcaagaaaa       120
     tgatgaatat ttctcgccga gccaggcatt ccccagcaag ctctacaaca aatacaggaa       180
     caccttattg aagcttcaga aaatgaatct aaacataaat ttaacaaaat tgtttagcta       240
     taatgtaatt ccagactata taaaaaaaac tctgttaata gcatgtcatc tgcaccaatg       300
     aaagtgaaaa ggaggacagg aattatttgg ttaaaacaag aaattaggga cctatatgct       360
     aaaaaacagt cactaaataa tgaacttttc aagacacact tagaattagc caacagcttc       420
     acaataccag cccaattcga ggaaataact gagagggaaa aggcacacat acaaaaacta       480
     atccaagaga aacaagaaaa acaaaacagt aagctcaaca aaattataaa tcaaacacac       540
     ccacccacag aaaactatca tcacaaccag aaacataact tccatgacag aattatcaac       600
     ctaacagaca caaatctcac aaaacaagaa aaawgcctac tagaaaaagg gccaaaacac       660
     aacataaaca cacaaatatc acacaaaaca atagaagacc tgataacaga atctgagcac       720
     attataaagg aacaagaaag actgagcaca ccaaacttta atgcaaattt aacaagagaa       780
     ttagtagctg cagaaataac acaaataatt aaaacacaca aaacaccata aactctaata       840
     acagaacacc agaagaaacc acatcccaca aactaaaaag aaaacaagac atactaacca       900
     gggcagataa aggaaatatt ttggttctga tgaaagaaga ggactacata aataaaacac       960
     tagattttct gaaaacaacc aataaacaaa ttgaacaaag acccaacagc aagataccag      1020
     aaaaacatca acagacactg aaaatcacca aaactatatt ctcaaaaggt cagataaaaa      1080
     gaatgacaca gaaaaaccca aaggcaccca ccctaaactc cttaccgaag gtgcacaaag      1140
     aaatgtcccg atacgccctg tcatgatttc agaaatgctc catcctatta cctagctcaa      1200
     cacacacaca cattactaaa gaaaatatac acttttgaaa acaacaggaa tctggaaaac      1260
     tcacaggaac taatagacaa aatcaagaat gtggacatac cagttacagc aaccctcata      1320
     tcctttgatg tcacatcaat gtacacctgc ataccaatag atgagacaat caacatcatc      1380
     acacacagac taagacaaca gggaaacaca ccagacacac acattgatga aatagaaacc      1440
     atactcagga ccataacaga acaaaattac tttgtgttca ataaagaatt ctactctcaa      1500
     caggaaggac taccaatggg atcaccgatt agtggccttc tagctaacat cttcatgaac      1560
     aacctggaaa acaaaatttt caggtacata atacaaccta agaaatacaa agtcatatac      1620
     tggtaccgtt acgtcgatga cataatatgt ctgatcaacg agccacacac aacacacata      1680
     aaacagcttc acaatgaaat aaacaatata cacccaaaaa ttcatttcac attggaaaca      1740
     gaaacagaca acactctgaa ttttctggat ctcaccataa aaagaacaaa caacacccat      1800
     gaattcacaa tattcagaaa acccaccacc acgagtacca ccatccaccg tctatcgaat      1860
     cacccggtaa cacacaaaca ggcaagcttc agattcttgc tcaacagact aaatagaaca      1920
     cccatcagca aacaaaacta cacacaggaa ctgaacacaa taaaacaaat agcattggag      1980
     aatggttatg atacccatat aatagacaga ctaaaccaac aaatatgcaa aaagaaaaat      2040
     aatgaacagg tcacacacac aacactggac cacacacaat acagaacaca acacactgac      2100
     aatgaccaca taccagacac aacagcacaa cacacaaaag gaaacaaatg gcacatactc      2160
     acctacaaca acaaaatagt tcacaggata ggcaacatat taaagaaaca gggactccaa      2220
     ataggataca ggacagacaa cacagtactg aagaaactca gaacacagac acaccaacag      2280
     acaaattcaa cagatcaggc atatatgaac tcacatgcaa tacatgtcag tcagtataca      2340
     ttggacaaac ttgtaggaat ttcaaaacca gatattcaga acacctcaga gcactaaaaa      2400
     gtcacagttc ccatagcaca tttgcagacc acctaatagc tcacaaccat tacccaacca      2460
     aaatagaaac agacctaaag atattaaaat caagccacaa cctataccac aaactcacaa      2520
     tagaagaaaa ttaccacata caaaaagcaa tagcagaagg aaaatcagtc atgaacgaat      2580
     acaccactct atgcaaaaat acattatttc acccattaaa tgaattgtac agaaaggatg      2640
     acacagacag ctaaaacaca cacacacaca cacacacaca cacacacaga caaaacaaac      2700
     attattcaaa tctaccgcca ttccactgga gaacagctga aagtcaactg acacatgtgc      2760
     attttaacaa agtaaacaca gacgaatttt taaagtggga agtgattgtg atagaaaaag      2820
     tccgcaaaat atgtgtatta catgtgtgct atgtacaaca gcgcggaaga agaagtgtat      2880
     gccaaaagaa actgtaagta atagatagta agcagacgat agaaatatcc ccacatacca      2940
     aaattacgtt ttcacaccat aagtagcgtt ttaaaaacct cacaagttgt taaaagagat      3000
     aattttggtt gcagatgaca acgctaccac tacataagta tgtaaaaagg gtcccacatg      3060
     accacagaat gtaaaataag gtaaaaacca aaataagact gacgactttt taggcctaaa      3120
     tttacaaata gcacagtagt aaaataaatg taatttgttt tcacagcatt aaataaattg      3180
     aaagcccact gatgatggca cagaggtgct gaaactagtt tgggtgcata ataaaacagt      3240
     gttttgcata tcaggcggac ctcataccca gaaattttta ctgcaaacac ggcaagaata      3300
     agagctgcaa atcaagaaaa tgat                                             3324
//
ID   Penelope-113_LMi repbase;    DNA;    INV; 525 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-113_LMi.
XX
NM   Penelope-113_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-525
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 151-151 (2015).
XX
DR   [1] (Consensus)
XX
CC   >83% identical to consensus.
XX
SQ   Sequence 525 BP; 132 A; 164 C; 176 G; 52 T; 1 other;
     gatggccgag ccgggccgga cgttcgtcag aacaccagcg acgggagagc acctccggaa        60
     ccacaccagg kgagggggga gtggcgcgga ccgcagtcga acctcaacac ggcgtgggcc       120
     tcagatgaca gccacgcccc aggggatgac cagagggggc gcggacggcc gtcgcaacac       180
     caggaacgag tgagggcctc tgaaacaacg ccaggcgggc gcggaccgca tagggaacac       240
     acggcgcggc gcggacctca acgaacgtcc gcggccccag aggacggccg aactgggtgc       300
     ggacagcaga tggagcacca ccaaccagag aggaccattg gaaccatgac ttgtgggcgc       360
     ggaccggtta acgaagcgcc cagcgccctc agggctaaat actggacccg atcctccaaa       420
     acggcagtct cagggagcac ctgaagaagg cagcgagtta cgccgccgaa atatcgtgcg       480
     agaacgacgt gaacatccgg cagaattccc gttcacacca tgtca                       525
//
ID   Penelope-114_LMi repbase;    DNA;    INV; 1718 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-114_LMi.
XX
NM   Penelope-114_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1718
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 152-152 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 1718 BP; 595 A; 338 C; 258 G; 527 T; 0 other;
     aatattaaat actggttcag atatgtagat gacatactgt gtttgtggac aggcaccaca        60
     agacaactca attcattttt ccaaaactta aatagcaagc ataaaaatat taaattcact       120
     atggagattg gcaacaaaac aataaatttc cttgatctaa gtattgatat aagtaaccaa       180
     actcatactt tcaaaatata cagaaaaact acagcttcag atacagtcat accttcttgc       240
     tcacaacatc caattacaca caaacatgca gctttccact ccatggtaca ccgtctcata       300
     tctgttccaa tgtcaaaaga ggatttcaaa agtgagttag agacaatcaa atttattgct       360
     tcaaccaatg gctacaatcc tgccctaatt gacaacattt tgcacagaaa acagaaaaag       420
     aaacttatac cctcctctat gctccatctg atactccctc cactgtatgc aggaaatggt       480
     gtacaatacc atacctagga catctgtcaa aaagagtgtc aaagtcactg aaatcctgca       540
     attacagggt ttcctattat gcaaacacag cacagtgtat cttcaatagc aaagataaga       600
     cccagctatt atccaatagt gggtatacaa aataacctgt ccagaatgtg ataagtttta       660
     tattggacag tcaggcagaa atattgcaac taggttggct gaacatgaac gtagctggag       720
     gatgcagaat aatgactcaa catttgctga gcatgtactg agtgagggac acagctacca       780
     gccacagtcc catgtccttc acatagcaaa caaaggtcaa aaactcaacc tgttagaagc       840
     actagagatc aataagcatc tagcccacag ccctgaatta atattaaatg accaaacaca       900
     actcaacaca tcccctctgc tgagtttcac ttaatgatcc atgttttgcc aaacccctcc       960
     cccccccaca ctccctatct ctgcattcat ttcccacaat atattcatgt ttatttgcct      1020
     aagtcaataa taatttaaaa tgttacacag gtatattcca gttaaaagtg tggttgagca      1080
     atttatttta tgtgaatatt aattgatgaa ttttgttata cttgttcact tacaagttta      1140
     aagttttaag tctgtttctg gtttgctccc caaatttcca aaatatccat cagcaattcg      1200
     gtcagtaatt tataaactga aattgttaat gaatatgtaa agctgttcag ttcacagcta      1260
     tagttttatt ccatgatatc cattacctcc cacaatgtaa gttatttaaa atatttttaa      1320
     gcagtctctc aagtaattta ttcattggaa tggttaattg tttaaaatgt tttacacata      1380
     gattttcgag attaaaatta agtttattct tggttccccc tcctgtatat ttattaatga      1440
     ttgttttatt ggaacatttt aattgtacta ccacagtaga gccaaggatg ataattgtta      1500
     tgtgcttgaa tataagtgta acgagtagaa tatctttcaa gtctgtatca aaacattgta      1560
     acttctttga gataaacagt aaagtctgaa gatggcctta taagccgaaa accggttcac      1620
     gaattaaaat aaacttgtgg aacatactca aaattgtgat ttttaattca gtatgatgat      1680
     gttccaccaa gaaccgacgg aagaatcagt caaaatga                              1718
//
ID   Penelope-115_LMi repbase;    DNA;    INV; 1398 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-115_LMi.
XX
NM   Penelope-115_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1398
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 153-153 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1398 BP; 560 A; 260 C; 190 G; 387 T; 1 other;
     cggcacgtta atgcttataa atggaataac gatgacataa aattcacaat gagtaaaatt        60
     aataattcag taaatttttt agactattac taaaaataat tatcaacaca cctttgaaat       120
     atacagaaag cctacgacta cacattgcat catgaatgct gacccatgtc accccacgtc       180
     atataaatta ggatttttca aatcaatgat taacagactt atcaacttac ccctaagtaa       240
     ggaagcagtt ggtaaagaac ttgaaattct tcagtacata gcgtacaaaa acaactttgt       300
     cctacaatta tcacacagtt atataacaaa cacctaacac caaaagaaga cagagtgcac       360
     aaagacatcc aacttgttag agaagacaga attcgtacta aatttaaata catacccaca       420
     atatatttgg gtaaawtttc caccaaaatt aagaactctt taaaaacaca agaattaaat       480
     tcgcctttcg caccaacaac gatttaagaa caaaactaca tttcgcaact gccagaaatt       540
     ctccatacca ggcatcagga atctacaaaa tcacgtgtaa caactgcaat agcttttatg       600
     tgggtcagac gggacgtaat ttcgtcacac gatttcgcga acacatcaga ataagcgaaa       660
     acaacctgtc aagtttttat atacacctta aaaatgaaaa ccattcaact caaaacatcg       720
     agagtgcact gacgatttta cataaagttc caaagggacc agtaatgaat attttggaag       780
     aggtcgagat atatattcac actaaaaatt atccagacaa agtgcttaat gaacacacgg       840
     attttaaaca taaaaattat ttagttaact ttattgactt catcgacgaa aaaggctgag       900
     tacataacaa caaaccaacg atagctatta taaatagcta ataaaataac cctctgacct       960
     attaaacatc tctggtatca tagttattta cattgtaaaa catctttggc aaactgttac      1020
     atttaaaaac gtgtttatac aaaaaataaa attaaaatct aattaacatc tcaggctgca      1080
     aaaagtacag cagctaaatg caaataacat actgctataa agtatgatta tataataaca      1140
     gttatgccag atgttatata tgacgctaga ccatcatagc tgtaagtaga aaatttttac      1200
     gtatgtaact cgtcatttac aatacacaaa aagtaattta tgttattctt acataatcgc      1260
     aggcacttga aaatggcgaa ctgctgaaac agctgttgtg taataaataa aaatattaat      1320
     tatagcagtg atctggacct cttaatacta tgtcctttag agacatttac ttcactgcgg      1380
     gcccaacaat caagaagt                                                    1398
//
ID   Penelope-116_LMi repbase;    DNA;    INV; 2690 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-116_LMi.
XX
NM   Penelope-116_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2690
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 263-263 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(380..550,511..876,898..1920,1781..2023,
FT                 2027..2242,2197..2403)
FT                 /product="Penelope-116_LMi_1p"
FT                 /translation="LLWGFLYKRDYIDKIKAFFNENGISSIDSDPTAAYDK
FT                 TLKAFLDGCLYIIPRKSCQSRLSLHYTPEELSKLKVMNPRAPSLCAQIKTH
FT                 KQGHPARLIVNGIGSPGYHASAFLLKLLKDKLSLDSSFSVRNRQHIVELLQ
FT                 DQWFPEGSXLLSLDIKNLYTNVPLQETVNIIQSNLILKEINYKLLELLTAH
FT                 NYFSFENKIYKQRWFGRELLSLADVFVTTLSANTSQKNHVVQQILFYRRYV
FT                 DDILIIFQGSEADITSLVNEFNSLHPKLSYTYESMDVQGILNYLDMSLQLV
FT                 ENKIQFNIFRKPTTSASIIHSTSCHPRSYKLSFFRSAITRILELPLSDESI
FT                 NNELNTLCHIAQKNGYSPSVVHQLYRERVRLTEEQRHTAAAKLVDERIRTA
FT                 LPFLGPFTYNIAKLFRNTNVQVVFSRGTNIQQILPHNEQPIKQPHAASGVY
FT                 KLKCVDCPAEYVGQTGRAFKTRFNEHLLTKKGANKEILSFCRAFKGFWASS
FT                 SHPRQFRNFALCPKRTEVKHPGRIQKKGQIKKYSPFAEHLKASGHQAPTLD
FT                 NLEILHYAQKGRKLSILEEFEISKRVYFKHPRLLNDQLTSKDQTFFDTFMQ
FT                 IFKYLCYIPWHPYKFDSCDIGILCKWCPYXKLTTVIRPTQHLQCCGALSFI
FT                 GGYSQYRFERCPRQYQYLYRRMSYTLPQAVPVPIPTHVVLIVDDLLWYRDI
FT                 IQGKSCNIHSVKQCINLFSTVNVTGDQWLHIIVSVRYPMTAF"
XX
SQ   Sequence 2690 BP; 869 A; 521 C; 482 G; 815 T; 3 other;
     aatttcaacc acccaaatgg atattgtaat ttaatgtcct taaattatta atcctattat        60
     gaaataactg cctgttaatg tagctattgt aattcaagga aattaactat ggaattacct       120
     ttagaaataa aatgaattgt gctacagcga aatgatgagc attaaatact ttcctggttg       180
     gtacttaaca atgttgattt aatatatttc tgcctctgag ttaagaatac aaacttcctg       240
     gagtgtgaaa tcttttagct tcattattct tgtggtggtt ggtagagaat acaataattc       300
     tatctagtgc atgaaatgca ctgtgtaacg atgatacatg atacagtgtt taatgagtag       360
     ttgaatctgt tgcaaataac tgttatgggg gtttctttat aagagagact acattgacaa       420
     aattaaggct ttctttaatg aaaacggcat cagtagtatt gattctgacc caacagcagc       480
     atatgacaag acgctaaagg cattccttga cggttgtctt tacattatac cccggaagag       540
     ttgtcaaagt tgaaagtcat gaatcctaga gcgccctccc tatgtgccca gataaaaacg       600
     cataaacagg gccacccagc gcgcttgatt gtcaatggaa taggtagccc tggataccat       660
     gcctctgcat ttttactcaa attattaaaa gacaaattgt cgttagatag tagcttctct       720
     gtacgcaatc ggcagcacat tgttgaatta cttcaggatc aatggttccc agagggcagc       780
     maactcctct cactggatat caaaaattta tataccaatg taccccttca ggaaactgtc       840
     aacattatcc agagtaatct aatcctaaag gaaatttaat cccagagaag tgaatgaaat       900
     tacaaattgc tggaattact cacagcccat aattattttt cttttgagaa caagatatat       960
     aagcaaagat ggtttggcag ggagttgtta tcgttagcag atgttttcgt caccacattg      1020
     agtgcgaata cttcgcaaaa aaatcatgtt gtgcaacaaa ttctgtttta taggagatat      1080
     gttgacgata ttttaattat ttttcaaggc agtgaagctg atataacctc cctggttaat      1140
     gaatttaaca gccttcatcc aaaactatcc tacacatatg aatcaatgga tgtgcaggga      1200
     attttgaatt atcttgacat gtctctgcag ttggtggaaa ataaaataca gttcaacatt      1260
     tttaggaagc caacaacgag tgcttcaata attcactcga catcttgtca tcctagaagc      1320
     tataagctaa gctttttcag atctgctata acacgtattt tagagctccc cctttccgat      1380
     gaatcaataa ataatgagct taataccctc tgccatattg cccagaaaaa tggttacagc      1440
     ccatctgtgg tccaccagct gtatagggag cgtgtcaggc ttacagaaga gcagaggcat      1500
     accgcggccg cgaagttagt tgacgaaaga atacgaactg cgctcccctt cctaggacct      1560
     ttcacatata atatagccaa attgttccgt aataccaatg tacaagttgt cttttctcgt      1620
     ggaacaaata ttcaacaaat tctaccacac aacgagcaac ctatcaaaca gccacacgca      1680
     gcttcgggtg tttataagct taaatgtgta gactgtccag ctgagtatgt gggacagaca      1740
     gggagggcat tcaaaacacg wttcaatgaa catctattaa caaaaaaagg ggcaaataaa      1800
     gaaatactct ccttttgccg agcatttaaa ggcttctggg catcaagctc ccaccctaga      1860
     caatttagaa attttgcatt atgcccaaaa aggacggaag ttaagcatcc tggaagaatt      1920
     tgagatatct aagcgggttt attttaaaca cccgagactt ctaaacgatc agttgacctc      1980
     aaaagaccaa acatttttcg atacttttat gcaaattttt aagtaatatc tctgttatat      2040
     accttggcat ccttacaaat ttgattcatg tgatattggt attttatgta aatggtgtcc      2100
     atatttkaaa ttaacaactg ttatccgacc gacccaacac ctacagtgtt gtggagcact      2160
     aagctttatt ggcggttact cgcagtacag atttgaacgc tgccccaggc agtaccagta      2220
     cctataccga cgcatgtcgt attaatagtt gacgacctac tttggtacag ggacatcata      2280
     caaggtaaat cttgcaatat ccattcagtt aaacaatgta tcaatctgtt ttcaacggtc      2340
     aatgttaccg gagatcaatg gttacatatt attgtctctg taagataccc tatgaccgca      2400
     ttttaatcta aacaccctct accacagagt agataaaaca ttagtaccgt acattatcac      2460
     aattcttatt accagtttca gattggtttg tagctaaaaa tttcgaaata ttgtcatgta      2520
     aatattgtaa gttctgtttc atttttcttc tttgtcagat atctgaagat gccctaaccg      2580
     ggcgaaacgc gtcattgaaa taaaaaatat ttgcaatcaa gacattcttt tattcaagaa      2640
     ttcaactaac acggttgctg taccacacca cataaaatgg aatgggaaga                 2690
//
ID   Penelope-117_LMi repbase;    DNA;    INV; 1841 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-117_LMi.
XX
NM   Penelope-117_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1841
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 154-154 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1841 BP; 605 A; 401 C; 407 G; 428 T; 0 other;
     ccgctgacaa aggaaatgct acagttgtgc taaagagcga agattatcac aagagatcat        60
     gatctcttgg atcccacgac ttaaagactt gagaaggatc ctactccaca acgaatcatc       120
     tgacaaaaca gtcttctctc tcttcggatg ataaaaaaca actgtgcaaa acagaagctt       180
     atccacccag actatatggc ctaccaaagg tgcataagcc catggtcccg ttaagaccga       240
     ttgtgagcgc cataggatct cccacccatg aggtggccag acatctcgct tctctgctgc       300
     agccgtacat tggaaaaacg gacagccaca ttaaaaactc tgtgcatttt attgagaaac       360
     taaaggagat taatgtcagc ccgagtgata ttctggtgag ttttgatgta gtgtccttgt       420
     ttactgtggt tcctgtaaac gaagctattt catacatagc agatatgttt ccatctgaca       480
     tcgtggcctt gttcagacac tgccttacca caacgtattt ccagtacaac gatgagttct       540
     atgaacaaat taacggagtg gctatgggca gccctcttag tccagctgtt gccaacttat       600
     ttatggagtt tttcgaacag caggcgctgc agactgccag aaagaagcca actaattggt       660
     accgatatgt tgacgacacc tttgtagtgt ggagccatgg tgaagaggag ctggatgtct       720
     tcttattgca tctcaacagc attaatcaaa atatacagtt cacgatggag aaagagagca       780
     atggccaact taatttcctg gatgtatcgg taataaaacg agaggacgga actctgggcc       840
     ataaggtata cagaaagaac acacatactg atcgatacct ccacaaggag tcaaaccatc       900
     atccgaggca aaaaagaggt atcattaaaa ccttggtgga tagagccaac aaaatctgtg       960
     agccagttta cttggaggat gaactaaatc acttacggtc ggccttcaag aaaaatggat      1020
     atggtgccaa ggaaattgat cgagctctcc atcaaagaag agaagaatcc agaagttctg      1080
     agcaacgaca acaatctgga aaagttttcc tgccgtacat tagcagaatt actgatcgaa      1140
     tcgggaaagt attggccaag catggcgtcg aaaccatcta cagacccacg aagaagatca      1200
     aagaatattt gagatcagca aaagacgcac gtcaccccct agcaacacct ggggtttata      1260
     aaattccttg cagctgtggt aaagtatata ttggtacaac aaaaagaagc gtcaacactc      1320
     gcatatctga acataaaagg aactgtcgtc tgggccacac ggaaaaatcg gcagtggctg      1380
     aacatgtttt tcaaaaagga aatcatgaaa taaaatttaa cgagacgagc gttttagcta      1440
     ggacatctca gtaccatgca cgcatgtata gagaagcaat agagatccac aaacaccaga      1500
     ataattttaa taggaaagaa gaaggtctga agttagataa aatatggatg tcgacactgc      1560
     accaacaaaa cgacaatcga ttatttttaa tcgagaatga cgacgtcatc cagagatagc      1620
     tacaaagtca gcatcacgtg acgtatggtg gcgccctcta tgccctctat aaatgcgaga      1680
     gcccctcggc ccacagtggc agtagccgga agacccttga agatgtctcc cgcagttgga      1740
     gacgaaacgt cgggaggaag ttttacatct ggaccacggc ccatcagccc ggaaatttta      1800
     cctgaagaca acgccggccg tgaaagttta cattgtatga t                          1841
//
ID   Penelope-118_LMi repbase;    DNA;    INV; 1431 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-118_LMi.
XX
NM   Penelope-118_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1431
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 155-155 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1431 BP; 401 A; 298 C; 246 G; 485 T; 1 other;
     ccccttgtca cctgctaact tacagaagga aatggatata ataaagtcca ttgccatcaa        60
     taacgggtac gatcaagata ctgtgcaacg aatctttgat aagaaaacct cccaacactg       120
     ttcaacttaa taacaaatca cacctcggta aaaccgacag tgaaaagttt atttctattc       180
     catttttggg aaacgtatcc tacagattaa aacgtctatt ggcgagaaaa tgtgactgca       240
     gagtagcttt ttccaccaac aacaacttaa gaaaaatctg gtccatacgc tcaaaaccgt       300
     tgtggaccca ttctctaatt ctggagttta caagctaatt tgcaataact gccccggtta       360
     ctatacagga caaacaggta gggcgattaa agtaaggtat aaagaacacc tgttagggaa       420
     gaaaggtgcc aatgtacata attcgacctt tgctgagcac ttgcttattg ccgatcatat       480
     tccgaggcct ttggaagaca ctataatatt acacaaggag gttaaaggga ggaaattaga       540
     tttgtgggaa gagcttcaaa tttttaaaca tcttgctctt aatgatggca atatttctta       600
     atgaccaact ccagctcgca agtagacagt acctagaagg cttcaaacct gtattatttg       660
     tgtgactttt tgctagtcaa cattggttcc tgcacgatgt ctgttatcct cagaattcta       720
     actgtacatt ttgtagtaat cttttctggt ccgtgatgag cgatgttttg ctttaacccc       780
     ccccccgttt catgcgccgt gtgcttttgt caatgtacgt ttccaccatg agatggccct       840
     tgcgtggtgc atgtatttca acaagcattc ttcaactctc cttttcacgc aacagtatac       900
     atctgctact tttatcagct ttctcatttt ctacccatat ttctctgtca atatttttta       960
     catttttaca ttttttcttt tatcagcaca tgcatatttt gatcacgtga ctataactca      1020
     ttcgcctctt ggcgccacct agcagtgcat gtcactagtg tccctacgcc tgtcagtaag      1080
     cggagctcac tcggtgtgtg tgcggcatta ctccacagtt ttaaatctga catgtctagt      1140
     ttaacttatt acattttaac tgtttgacat ggagtaatga tgcgcttcac tagagcattt      1200
     gttctgtttt cttacaacaa cttttacatg attagtgagt atattctcat caatgctgta      1260
     tttttatttt ttattkttat attttcctac caattgtata ttattgtttg gcatattact      1320
     gttcttaggt ccgacttctg aagaagacaa aattaatttt gtcgaaacct aggtaaaggt      1380
     tttaattaaa cccattttaa cgcaactggt tggctgctat ttattctaaa a               1431
//
ID   Penelope-119_LMi repbase;    DNA;    INV; 2378 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-119_LMi.
XX
NM   Penelope-119_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2378
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 264-264 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..197,181..408,449..1441,1413..1598)
FT                 /product="Penelope-119_LMi_1p"
FT                 /translation="LVEATVAVQKGFVKYINRKLISNIKKVAHNMNPKPPA
FT                 LRSQFKLHKQNHPIRPLVNGIVAPSHTGPHHTLARRLHYKIKDSFVFEHNF
FT                 SVKNSVDLINRLRMIQCTADTRLVSFDIASLYTNVPVDTAIALVEKNLLLH
FT                 KKSSSQIQLLTFNGKMYIQPYGLAMGSPLAGILADVFINALETEFFNSSSE
FT                 LRQKIRFYARYVDDIIIAFDGNDHELDLLFNAFNSFHEKISFTKELQNEKG
FT                 ELNFLDLTISIVNNSFNFNIFRKETYSDNIIHADSTHPEAQKLAFFHSAIH
FT                 RMVTTPLSPANQENELSVIKSIAVNNGYDQGLVDHILRKKTSPKCSTLHNI
FT                 SSSDSKNTKKFISIPFLGNISYRIKRLLMKNFNCNISFSTDNTLKRKLLHT
FT                 VKNTGDWFSNSGVYKLICDNCPCYYIGQTGRAVKTRYKEHLLGKKGANIHN
FT                 STFAEHLLIANHTPKKLEDTYHFTQRSKTHIILHREVKGRKLDLWEELEIF
FT                 KHLELKDGNLLNDQLNLACKQYFEGFKPILLTKSYSYR"
XX
SQ   Sequence 2378 BP; 763 A; 472 C; 391 G; 750 T; 2 other;
     acttagttga ggctactgtc gcggtacaga aaggattcgt caagtatatc aacagaaagc        60
     ttattagtaa cattaaaaaa gtggctcata acatgaatcc gaagccacct gcactaagaa       120
     gtcagttcaa actgcataaa caaaatcatc caattcgtcc tttagtgaat ggaattgtag       180
     ccccatcaca cactggctag gcgtcttcat tataaaatca aggactcatt tgtatttgaa       240
     cataattttt ctgtcaaaaa cagcgtagac ttaatcaaca gattaagaat gatacagtgc       300
     actgctgaca caagattggt ttcttttgat attgctagtt tatatacaaa tgtccctgtt       360
     gacacagcta tagctcttgt agagaagaat ctactactac ataagaaatg agtactattc       420
     agactgccga actcgtcgct ttacttaaag tagttctcaa atacaattac ttacgttcaa       480
     cgggaaaatg tacattcagc cgtatggttt ggccatgggt agtccactcg ctggtatttt       540
     ggcggatgtt ttcattaacg ctctagaaac agaatttttc aattccagtt ccgaattacg       600
     tcaaaaaatt cgtttttatg cacgatatgt tgacgacatt atcattgctt ttgacggtaa       660
     cgatcacgag ttggatcttc ttttcaatgc attcaatagt tttcatgaga aaatttcttt       720
     tacgaaagaa cttcaaaatg agaaagggga actgaatttt cttgatttaa ccatttcgat       780
     agtaaacaat tcattcaatt tcaacatatt ccgcaaagaa acctactcag acaacattat       840
     ccatgctgac tcaacgcatc cagaagccca aaaactagcg tttttccatt ctgctataca       900
     ccgtatggta accacccctt tgtcacctgc caaccaagaa aacgaattaa gtgtgataaa       960
     atccattgca gtcaacaatg ggtatgacca gggtttggta gatcacatct tgaggaagaa      1020
     aacctctcca aaatgctcga cattgcacaa catttcttca agtgacagca aaaatactaa      1080
     gaaattcata tccattcctt tcttgggaaa tatttcctac agaatcaagc gtcttctaat      1140
     gaaaaatttc aactgtaata tttctttttc tacagacaac actctaaaga gaaaattgtt      1200
     gcacacagtg aaaaatacag gtgattggtt ttctaattca ggagtctata aattaatatg      1260
     tgataactgt ccgtgttact acattggcca aacaggcaga gccgtgaaga caagatacaa      1320
     agagcactta ttaggaaaga aaggagcgaa catacataac tctacgtttg cagaacactt      1380
     actgattgcc aaccacactc cgaaaaagtt agaagacaca tatcatttta cacagagaag      1440
     ttaaagggcg aaaacttgat ctttgggaag aacttgagat ctttaaacat ctagaactca      1500
     aggatggcaa tttattaaat gatcagttaa atctcgcctg taaacaatat tttgaaggct      1560
     tcaaacccat actgctcacg aaatcttaca gctaccggta gcctttgcga tttgttcatt      1620
     tcctcaaaaa tctaaaacct gcttacattt gtaattttcc tttgtaattg acatgacagc      1680
     cattttatct catttgcgtc accatactat aagccacgta ctaatccagt tcatttttat      1740
     tcatctgaga ggtacacttt tctattatta ttgttcgttt acgcaatgta tttcaacagt      1800
     atttgttagt cagcatattt ttacaattga cctttgtaat atttgtttcc acagcttccc      1860
     tcaaccttct caccctcttt ttatccaaat attccattta ttgacatcgt tataaattca      1920
     atgtacattc tgccaatagc tacttaascc actgaaagtt ccacggcgca tgcgccaccg      1980
     gtcctggtat gcacgctcct tgcttcaaat cagtaagtgt gaatgactgc agatgcgctg      2040
     acgcatcttt cagtctaaac cacattccct agatcatagg gatgtccaat tcctgtgata      2100
     tgcaagtata gtaagtaaca gttttattct gatttgtatt tcacaatgtt ttagacaata      2160
     ggcttggtat gacgcatatt tcaggcataa cgattatgaa tttktaattt atgatgtcac      2220
     attgtctata ggtatacatg tatttctgaa gaagacgggt ttatatctgt cgaaaccgtg      2280
     gtcaaagttt attaaacaac tattattgca actggttggc tgattattaa tttgctatcc      2340
     tataaccgtt gctgagacgc agatgtttaa aatattga                              2378
//
ID   Penelope-11_CoFl repbase;    DNA;    INV; 2897 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-11_CoFl.
XX
NM   Penelope-11_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2897
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2416-2416 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The sequences 1-153 and 2745-2897
CC   are PLTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           114..2633
FT                 /product="Penelope-11_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MFYQCPSEKLIDNILNASKAYLAIFYRKCLVKFYKCN
FT                 NHLYFNKRCLQLHLVPTYMKIICRHKSTESTAVIDKAYTFWLNLELKKWYR
FT                 IRSNLSHHLKLIHSELLRRCHNVEFDILDEETRNYVREISHTHRQTHTKKL
FT                 DRLIQKKNSKIQQRANNSPLTTHTKVNKQQQTTSSATAESSTKFDFSFSFY
FT                 PRVKNLSEVMFTQNEINILNKGLKYCPNIKNFKDFIELSVNAEIASKGIDK
FT                 NELQLFRYKCVDVINKNKKQFSTNNSSEFKSIISLKKKLKNNDLILCKADK
FT                 GNTVTILNKCDYIEKTELLINNNNFKILNSDPTAKFQRDTKSVLKNCTNIL
FT                 HDCNLHMLTVMNPTVPVLYSLPKIHKEGIPMRPIVSYTNAPTYLLAKELNK
FT                 ILPSLLNFKPKHSIKNTSQLIDKLRDLKIPCNARLLSFDVVNLFPSIPTDH
FT                 LKNIIKYLVDNSPSLCVDSKQEILKLISICLEQSYFKFNNKYYLQLNGLPM
FT                 GSPLSPLLSEIFMSYVEDLIFDSTSPLTSNVLHWSRYVDDVFCIWKGTERT
FT                 MTNFLSYINDLVPGIKFTAEAENDNSLNFLDLKITRKDGELLYEIYRKPTF
FT                 TDTLVPYDSKQSINIKMSAFYSFVHRLLTVPLTKSNYEKEINLLKCLAINN
FT                 GYNENLIDNLIFKINNRLISKYFYAVAKQTKKFNMLNYVPIVSDKISNFLK
FT                 KQNVNTIMVNKRNLKSILCNNKEKVGILQKCGVYQINCSECDAIYIGQTGR
FT                 ALSERIKEHKKSIYNDRNTTGFSEHCNSNAHFLDENNIKLLHSLPKSFKLN
FT                 LFETIEIELAKKHNKFITNDQINFTLSPIIENVIHSIS"
XX
SQ   Sequence 2897 BP; 1119 A; 499 C; 413 G; 860 T; 6 other;
     tmgagcatct gacaatggcg taactgcttc aamagctgtc tgcgaataat aaaamattgt        60
     gaaacaaagc caactttawa gttatcackt atttatatac attttgattt gaaatgtttt       120
     accaatgccc aagcgagaaa ctaattgata atattttaaa tgctagcaaa gcatatctcg       180
     caatctttta taggaagtgt ctagtaaagt tttacaagtg taacaaccat ctttatttta       240
     ataagagatg tttacaacta catttggtac ctacatatat gaagataatt tgcmgacata       300
     aatcaacaga atcaaccgca gtgattgaca aagcatacac tttttggcta aatctggaat       360
     taaaaaagtg gtacagaatc aggagcaatc tgtcacacca cttaaagtta atacacagcg       420
     aactacttag acgctgccat aacgtagaat ttgatatttt agacgaagag acgagaaatt       480
     atgttcgaga aatttcacac acacaccgcc aaacacatac taagaaactt gataggctta       540
     tacagaagaa gaacagcaaa atacaacaga gagcaaataa ttcaccactt actacacata       600
     cgaaggttaa taaacaacaa cagactacgt catcggccac cgcggaatcc agtacaaagt       660
     ttgatttctc tttttctttt tatccgagag tcaagaactt atccgaagtt atgttcacac       720
     aaaatgaaat aaacattttg aataaaggtt taaagtactg tcctaacatt aaaaacttta       780
     aagatttcat cgaactttct gtaaacgcag aaatagcatc aaaaggtata gataaaaacg       840
     aactacaact ttttagatac aaatgcgttg atgtaataaa taaaaacaaa aaacaatttt       900
     caactaacaa tagctcagaa ttcaaaagta ttatttcttt aaagaaaaaa ctcaaaaata       960
     atgatttaat tttatgtaaa gctgacaaag gaaacactgt taccatttta aataagtgtg      1020
     actatattga aaagacagaa cttttaataa ataacaataa tttcaaaatt ttgaattctg      1080
     atcctacagc aaaatttcaa agggacacta agtcagtttt aaaaaattgt acaaacatac      1140
     tccatgattg taatttgcac atgttaactg ttatgaatcc tacggtgccg gtactataca      1200
     gcttacctaa aatacacaag gagggcatac caatgagacc aatagtatct tatactaatg      1260
     caccaaccta cttactcgca aaagaactta ataaaatact cccttcctta ctcaacttta      1320
     agccaaaaca tagtattaaa aatacaagtc aactaataga taaacttaga gatctcaaaa      1380
     ttccatgtaa tgcacgattg ctttcattcg atgttgttaa tctatttccc tccatcccta      1440
     cagaccatct aaagaatatt attaaatatc tggttgacaa tagcccttcc ttgtgtgttg      1500
     attcaaaaca agaaatttta aaattaatat ccatttgttt agaacaaagc tacttcaagt      1560
     tcaataataa atattattta caacttaacg gtcttccaat gggctctccc ctctcccccc      1620
     ttctcagtga gatattcatg tcatacgtag aggaccttat attcgattcg acctcccccc      1680
     tcaccagtaa tgttttacac tggtcgaggt atgtcgatga tgtgttttgc atctggaagg      1740
     gtacagagag gacaatgacc aattttctca gctacataaa tgatttagta ccgggtataa      1800
     aatttacagc agaagctgaa aatgacaata gtttaaattt tctggatcta aaaataacac      1860
     gaaaagacgg tgagttgttg tatgaaattt atagaaaacc aactttcaca gatacgttag      1920
     taccgtacga ttcaaagcag tccatcaata taaaaatgag cgcattttac tcttttgtac      1980
     atagattatt aacagtaccg ttaacgaaat ctaattacga aaaggaaatc aatctattaa      2040
     aatgtttagc aattaataat ggttacaatg aaaacctcat agataatcta atttttaaaa      2100
     taaacaatag acttatttca aaatattttt acgcagtcgc aaaacaaacc aaaaaattta      2160
     atatgttgaa ttatgttccc atagtatccg ataaaataag taatttctta aaaaaacaaa      2220
     atgtaaatac aatcatggtc aataaacgta acttgaaatc cattttatgt aataataagg      2280
     aaaaagttgg tattttacag aaatgtggtg tttatcagat taattgttcc gaatgcgatg      2340
     ccatatatat tggacagaca ggacgtgccc tttccgaacg tataaaggag cataaaaagt      2400
     ctatttataa tgatcgcaat acgacgggtt ttagtgaaca ttgtaattct aatgcgcatt      2460
     tcctagatga aaataatata aagttactac acagtttacc taaaagtttt aaattgaatc      2520
     tgtttgagac aatagaaata gaattagcaa aaaaacataa taaattcata acgaacgatc      2580
     aaattaattt tactctatct ccaataatag aaaatgtaat acatagtatc tcataaggta      2640
     ctcatacaca ggcgcataca tatcataccg ttgagcgaca actacatttg taatacttgt      2700
     acttgacttc agcgaactga tgtacataga ccattcagtg tatgtcgagc atctgacaat      2760
     ggcgtaactg ccgaaacagc tgtctgcgaa taataaaaca ttgtgaaaca aagccaactt      2820
     tgaagttttt acttattaat atacattttg attcgaaatg tttcaccaac gcccaagcga      2880
     gaaatcaatt aataata                                                     2897
//
ID   Penelope-11_FoCa repbase;    DNA;    INV; 2842 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-11_FoCa.
XX
NM   Penelope-11_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2842
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2745-2745 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.4% identical to consensus. The sequences 1-200 and 2641-2840
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..2655
FT                 /product="Penelope-11_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MPDEDDCGSLKASNFSINQVLSSKTAEMSTNNYVGGW
FT                 NKFYNILRRLRGEASEEVIGKIKKLESLYKQEVHLTNNTIFLRRCKKYDII
FT                 PTGLLLKDFSIRFGPHDKIQSFQKRTESNLLNCLINVNYTKQNKIQSEMKK
FT                 LRTTIRESIPTLWNWLCNLMNNMRNSLHLKISSTQKNKFNRLMEKRAENVC
FT                 TTAYQNNKDLLQKPTIKNLSSRPLSALEEKLLNLGLNFSLPIKNVGNTMID
FT                 TAATLELRMMDMELTDNDKNKIRTGVARIMAKHIKKEQIQQRWEKWINNSI
FT                 RSLLQDTTICITKADKGNCVVIMDRETYREKMAAMIMSGPYTMLNHDPTPL
FT                 HAKNVAEKCQILKENEILPENILPQLIEKNPRAPIIYGAPKIHKCNIPLRP
FT                 IVDYRCSPTYKLSKYLANILTPVASKHEFSIKNSTELVKDLKKLKSRPGDI
FT                 KVSFDVTSLFTMVPIPETIDYIKERLESYPQLAELTKLSVEDIISLLRLCT
FT                 SASYFQLEEKYYKQNHGTAMGSPLSPVMAEFFLQKLELTLIRSNPHIYFWR
FT                 RFVDDILCIIRRRRKDQILQMINNFHPSIHFTMEEEIDERIPFLDILIYPK
FT                 NDFSLGHYIYRKPTQTSQYLNFRSFHPRAHKIGVIDTLLTRAIRLSDVEHL
FT                 DDEIKLTKIILEKNDYPSSLINNRLTRVRIKCQQDQREKTVDIQKRIILPW
FT                 AGDVTSKIASYLRKTMDVEIGYYPGPKLGSILCNAKQKLNRPRAGVYQIKC
FT                 NSCPDVYIGETERDFLIRINEHQNDIRRASITSPVALHMLENNHELDTTSF
FT                 RLIVPEHRKFFRKFKESLYIKKMDNKMNVSKGININPIWCATLLNFL"
XX
SQ   Sequence 2842 BP; 1076 A; 577 C; 453 G; 735 T; 1 other;
     aaattttwtt ttttataaat tacgtccagt aaccaagtag caaaatgtat aacagattat        60
     catattttta aaaataagca atgattgtga tttccaaaat ctttgtacat gcctgatgaa       120
     gatgactgtg ggtcactgaa agctagcaat ttttcaataa atcaagtatt atcctcgaaa       180
     accgcagaga tgtctactaa taattatgtc ggaggatgga acaaattcta caatatactt       240
     agaaggcttc gcggtgaagc aagtgaagaa gtcattggaa agatcaagaa attggagtca       300
     ctctacaaac aagaagtcca tttaacaaac aacactattt ttctacgacg ttgcaaaaaa       360
     tatgacatta tcccaaccgg actactactc aaagatttct ccataagatt cggacctcat       420
     gataagatcc aaagttttca aaaacgaact gagtcaaact tattaaactg tcttatcaat       480
     gtaaactaca ccaagcaaaa taaaattcaa tcagaaatga agaaattaag aacaaccatt       540
     cgagagtcaa tccctacatt atggaactgg ctatgcaact taatgaacaa tatgagaaac       600
     tcccttcatc tgaaaatttc cagcacgcag aaaaataagt tcaatagact tatggagaaa       660
     agagccgaaa atgtctgtac cacagcatat caaaataata aagatttact ccagaaacca       720
     acaattaaaa acttgtcatc ccggcctctt tctgcattgg aagaaaaatt actcaaccta       780
     ggactgaact tttctcttcc cataaaaaat gttggaaaca ctatgattga cactgcagcg       840
     accctggaac ttcgaatgat ggatatggaa ctgacagata atgacaaaaa caaaatcaga       900
     accggagtag caagaataat ggccaaacac attaaaaaag aacaaatcca acaaagatgg       960
     gaaaagtgga taaataattc aatcagatcc ttacttcaag acacgacaat atgtattact      1020
     aaagcggaca aaggaaattg cgtggtcatc atggacagag aaacgtatag agaaaaaatg      1080
     gctgcaatga tcatgtctgg tccatacacc atgctaaacc atgacccaac cccacttcat      1140
     gcgaaaaacg ttgcagaaaa gtgtcaaatc ttgaaagaaa atgagatcct gcccgaaaat      1200
     attttaccac aattaataga aaagaatcct cgagctccaa taatttatgg tgctcccaaa      1260
     atccacaagt gcaacatccc gttaagacca attgtggatt acagatgctc tccaacatat      1320
     aaattgtcca aatatttagc aaatattcta actccagtcg cctcaaaaca tgaattctca      1380
     atcaaaaact ctactgaact cgtcaaggat ctaaagaaat taaaatcaag accaggtgac      1440
     atcaaagttt ctttcgatgt tacctctctc ttcacaatgg tcccaatacc agagactata      1500
     gattacatca aagaaagatt ggaatcatat ccacaactcg cggaattaac aaaactgtcc      1560
     gtggaagata tcatatcact cctaagatta tgtacatccg cttcatattt ccaattagaa      1620
     gagaaatatt acaaacaaaa ccatgggaca gcgatggggt ctcctctttc ccccgtgatg      1680
     gcagagtttt tccttcaaaa actggaatta acacttatca gaagcaaccc ccacatctac      1740
     ttttggagac gctttgtgga tgacatattg tgtataatca gacgaaggag aaaagaccaa      1800
     atattacaaa tgatcaacaa ttttcatcca tccatccatt tcacaatgga ggaagaaatt      1860
     gatgaaagaa taccattcct tgacatttta atttatccta aaaatgactt ttctttaggc      1920
     cattacattt acagaaaacc aactcaaaca tcccaatatc tcaatttccg gtcattccac      1980
     cctcgtgctc acaagattgg tgtcatcgac acactactta ccagagccat ccgactttca      2040
     gacgtggaac accttgatga tgaaatcaaa cttaccaaaa tcatactaga gaaaaatgat      2100
     tatccttcat ctcttattaa taaccgtctg accagggtgc ggataaaatg tcaacaagat      2160
     caacgggaaa aaacggttga catacagaaa aggatcattc ttccgtgggc tggagatgta      2220
     acgtcaaaaa ttgcatccta cttacgaaaa actatggacg tggaaatagg atattatccc      2280
     ggaccgaaac tgggttcaat tttatgtaat gctaagcaga agctgaacag accaagagct      2340
     ggagtgtacc aaatcaaatg caactcttgt ccagatgtgt acattggtga gaccgaacga      2400
     gactttttga taagaattaa tgaacaccaa aacgatatta gaagagccag tataacttct      2460
     cctgttgcac tacacatgct ggaaaacaat cacgaattag acacaacatc cttccgtctc      2520
     atagttcctg aacaccggaa attctttcgc aaatttaaag aatccctcta cataaagaaa      2580
     atggacaaca aaatgaacgt ttccaaaggc attaacatca acccgatatg gtgcgcaaca      2640
     ctattaaatt ttttataaat tacgtccagt aaccaagtag caaaatgtat aacagattat      2700
     catattttta aaaataagca atgattgtga tttccaaaat ctttgtacat gcctgatgaa      2760
     gatgactgtg ggtcactgaa agctagcaat ttttcaataa atcaagtatt atcctcgaaa      2820
     accgcagaga tgtctactaa ta                                               2842
//
ID   Penelope-11_LMi repbase;    DNA;    INV; 2574 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-11_LMi.
XX
NM   Penelope-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2574
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3417-3417 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(43..450,375..926,833..2455)
FT                 /product="Penelope-11_LMi_1p"
FT                 /translation="MAFLLRFVTSKLSRVCKFKHYIDSAAAARIKRRASAA
FT                 LVRERVRYTRRELHLLSKKLLSLHLKISSRVSAVSWDWIDSATWALADWTE
FT                 QQVKNRQVSKYNRLEAQAQEETRIVDAPCLISRIESWTTQPFWCSRRVNRR
FT                 RTVFNLTDRILDDAAVLVLEKGLNFAPTPGTAPVREVISGIEQAILKFPSD
FT                 VAEEIRRDTCRILTKAQPKKFNISSAERKALSDLRADKDLAILPADKGNAT
FT                 VLLSRTEYNSKIEVLLDDPAYRKLREDLTCKIQRKTLDLIKKSSIPNNLGK
FT                 GLWQQAAVPPRLYGLPRSIRKGLLYVQLPWERPVATGCSSSETVRPTKIHK
FT                 EGTPLRPIVSNIGAPTYFLAKYLASQLAPLVGKCEHHIKNLEDFIQRLRTL
FT                 KLQSTDLLVSLTSYLYLPKYLYRTHCSSSAVSLRKTLWHCSSMCFLFNNQY
FT                 FEQVDGVAMGSPLSPMVANYFMEDFEEKALQSARLQPSCFWRYVDDTFVVW
FT                 PHGIETLPTFLQHLNSLHPSIQFTMEVERDGSLPFLDVMVKRKPDGTLGHS
FT                 VYRKATHTELYLQATSCHHPAQRGSVLRSLVHRAHVVSDTDSLPGELQHLR
FT                 TVFQQNGYSERQIRNAFRSKQFQRKDVDEDSEAPTATAFLPYFGGMSSRIE
FT                 RILKRHDIKCVFRPPSKLRNLLCSVKDELGLRKRGVYKIPCQCGKSYIGQT
FT                 CRTVQERCTEHQRHTRLGQPSKSAVAEHCLNTGHRMCYEKTEVLSSVSSFW
FT                 DSIFKEAIHIRTADNLINRDAGFQMSAAWNPALAAIKTKQEKRENRIHEGT
FT                 QRNADTSSNFHHRSVRQHSHCPRRTRGRRLLGSQQGAPEAPLPTNTERSLA
FT                 HAYSLLTP"
XX
SQ   Sequence 2574 BP; 754 A; 615 C; 607 G; 598 T; 0 other;
     atttgacaag ttacgtaaga agagaggtag acgctgtgct ctatggcctt cttattgaga        60
     ttcgtgacaa gcaaactatc ccgagtttgc aaatttaaac attacattga ctctgctgcc       120
     gctgcgagaa ttaaacgacg agctagtgct gccctagtga gagagagggt acgttatacg       180
     cggcgggaac tgcacttgct gtccaagaaa ttactatcac tacatctgaa gatctcttca       240
     agggtatcag ctgtatcctg ggattggata gatagcgcta cctgggcgct agctgactgg       300
     actgagcaac aagtgaagaa ccgacaagtg tcaaaataca atcgtctcga ggcccaagca       360
     caagaagaaa ctagaatcgt cgacgcaccg tgtttaatct cacggataga atcttggacg       420
     acgcagccgt tttggtgctc gagaagggtt tgaattttgc accaacacca gggacagctc       480
     cggttcgaga agttatatct gggatagagc aagcaatttt gaaatttccc agtgacgttg       540
     cagaagagat taggagagac acctgcagaa tcctgaccaa agctcagccg aagaagttta       600
     atatctcttc agcagaaagg aaggctctga gtgatttgag ggcagacaaa gacctcgcaa       660
     ttttacctgc tgacaagggg aacgccactg tccttctctc aagaactgag tataactcca       720
     agatcgaggt actgcttgac gaccctgcat atcgcaagct gagagaagat ctgacttgca       780
     agattcagag gaaaacatta gacctcatta aaaagagttc tattccaaat aaccttggga       840
     aaggcctgtg gcaacaggct gcagttcctc cgagactgta cggcctacca agatccataa       900
     ggaagggact cctttacgtc caattgtgag caacattggt gcgcctacct acttcttggc       960
     taaatatctc gcttctcaat tggcaccact tgtaggcaaa tgtgaacacc acatcaaaaa      1020
     tttggaggac ttcatacaac gcctaaggac tcttaaacta caatcaacag atctcttggt      1080
     cagcttgacg tcgtatcttt atttaccaaa gtacctttac aggactcact gcagctcatc      1140
     agcagtaagt ttgagaaaga cattgtggca ttgttcgagc atgtgcttct tattcaacaa      1200
     ccagtatttt gaacaagttg acggagtcgc catggggagt cctctatctc ccatggtggc      1260
     caactatttt atggaagact ttgaggaaaa agcactacag tcagcacgtc tgcaaccttc      1320
     ttgtttctgg cgctatgtgg atgacacatt tgtggtgtgg cctcacggaa tagagacgtt      1380
     acccacgttt cttcagcatc tgaattcact ccatccaagt atccagttca ccatggaggt      1440
     ggaaagagac ggaagtttac cttttctgga tgttatggta aaaagaaaac ctgatggtac      1500
     gctgggccac agtgtctacc gcaaagcgac gcacacagag ctatatttgc aggccacaag      1560
     ttgtcatcat cctgcacaac gcggtagcgt cttacgctct ttggtacaca gggcacacgt      1620
     ggtctcagat actgacagct tgccaggtga actacaacat ctaagaactg tattccagca      1680
     aaacggttat tctgagcgac aaatacgcaa tgcatttcga tcgaagcaat ttcaacgaaa      1740
     ggatgttgat gaagattcgg aggcacccac tgcaacggcg ttcttgccat attttggtgg      1800
     catgtcatca agaatagaac gaatcctcaa gagacacgac atcaaatgtg tgtttcgtcc      1860
     gccatcaaaa ctgaggaatc tattgtgctc ggtcaaagac gagcttggcc ttcgaaaacg      1920
     cggcgtatac aaaataccat gtcagtgcgg aaaatcttat atagggcaga catgtcgaac      1980
     tgtgcaagaa cgctgtactg aacaccaacg ccacacacgc ctaggacaac ctagtaagtc      2040
     agcggtagca gagcactgcc tgaacacagg tcatcggatg tgttatgaga aaactgaagt      2100
     tctatcgtca gtgtcatcat tttgggacag tatttttaag gaggccatac acatccgtac      2160
     ggcggacaat cttatcaaca gggatgcagg ttttcagatg agcgcagcct ggaatccagc      2220
     attggctgca atcaaaacaa aacaggagaa aagagaaaat cggatacacg aaggaacgca      2280
     gcgcaacgca gatactagtt ccaatttcca ccacaggagc gtccggcagc acagtcattg      2340
     cccacggcgc acgcgcggaa gacgcctcct cggctcccag cagggggcac cagaagcgcc      2400
     gctgccgacc aacactgaac ggtctctcgc gcatgcgtat tctctgctca cgccctgata      2460
     aataccgccg ccgccgcgca attaccatca gtcgcgcctt gaagtactga cagctaccac      2520
     cacctgaaga tgtcgaacag ttgtcgaaaa tattggggca aagttgaaaa gtca            2574
//
ID   Penelope-11_TrVa repbase;    DNA;    INV; 4514 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-11_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4514
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 624-624 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. This family is inserted in (TA)n
CC   microsatellites. It includes terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           2494..4071
FT                 /product="Penelope-11_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MMDLLNDSTVYKQIKRDLSNTQQLKNNSMINNWYKNK
FT                 FISQDMKDNLIMKEALPPKIYGLIKTHKPGNPVRPIVSCIQSPFYKMSKYF
FT                 ATILSKIVGKSKFNIKDSFHFQKFVKHQKVPENFVFVSLDVISLYTNVPIK
FT                 LALEIIDKNWPKIEKYTSFPKKEFLYGVETCLVSNFFQYKDLYFQQNSGLA
FT                 MGAPLSACVANLVMEFVESELLKTLMFKCIFYKRFVDDCIACIPRENCNAF
FT                 LNHFNSFHESLQFTMEIEIDKKINFLDLTLDHVKNEKVMTKWFQKPIHSGR
FT                 YLNYFSDVPFHQKLNMVNNLVNRVVTLTDQCYLKECIVKTKSMLQENGYPE
FT                 NFIDKIVKKHQYKKRNQQNLNSTPKAKFVAQNILKIPYIPVLSESLKTALE
FT                 PIGVQPVFTKNFSNKKLFTNLKSKVPTEKMSNVVYEIKCKDCEGTYIGQTK
FT                 RYLQERIKSHKYDKKEPTALHHHMIECAHEFDFEHPKVLARENNRKARLTL
FT                 EAIHIKRSQNAINFRNDTVGLSKRYDGFFL"
XX
SQ   Sequence 4514 BP; 1626 A; 642 C; 690 G; 1532 T; 24 other;
     taataataag taaacaaaat aagtggtaag tgcctgaata tttttttaaa taatttttct        60
     ggattttatt caaagaacaa taaggcaaga aaaattacaa ttttagattt taagaaacaa       120
     acgtttcggc tgcaaaacac tagccatctt cagtgtaaaa tttaaataca ttmaaaagaa       180
     aaaamaacca aaataaagga accacaaacg gttacatgat gaaaatagtg aagaaagaaa       240
     gagcagaaag aaaacaaaga gacgcagacg cagtctaccc tggacaaagg agcactgaag       300
     atcacaaaca aatcaatcac gggaaagtag caaaaaacac acagttgcca cattgccgca       360
     tgaatcakat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaatacaaat       420
     tttaatttgg cctaaagaaa aaacccatca taccttttgc ttaaacctac agtgtcattt       480
     ctgaaattaa ttgcattttg agaccttttt atatgaatag cttctaacgc tagtctggcc       540
     ttcctattat tctctctggc aaggactttg ggatsmwcaa aatcgaattc awscscamac       600
     tstatcawaw satkktgaag akcmgtgkgt tcctttctmt cgcatttgta ggagtacaac       660
     ccgtttttac taaaaatctt tccaacaaga agttgtttac caacttaaaa agtaaagttc       720
     ctactgagaa aatgtcaaac gtagtttatg aaattaaatg taaagactgt gagggaacct       780
     atattggaca aacaaagaga tatttacaag aaaggattaa gtctcacaaa tacggtaaaa       840
     aagaacccac tgctcttcac catcatatga tagagtgtgc acatgaattt gattttgagc       900
     atcccaaagt ccttgccaga gagaataata ggaaggccag actaacgtta gaagctattc       960
     atataaaaag gtcccgaaat gtaattaatt tcagaaatga cactgtaggt ttaagcaaaa      1020
     ggtatgatgg gttttttctt taggccaaat taaaatttgt attttttttt tttttttttt      1080
     tttttttttt ttttttttct atatgattca tgcggcaatg tggcaaccgt gtgttttttg      1140
     ctacttttcc gtgattgatt tgtttgtggt cttcagtgct cctttgtcca gggtagactg      1200
     cgtctgcgtc tctttgtttt ctttctgctc tttctttttt cactattttc atcatgtaac      1260
     cgtttgtggt tcctttattt tggttgtttt ttcttttgaa tgtatttaaa ttttacactg      1320
     aagatggcta gtgttttgca gccgaaacgt ttgtttctta aaatctaaaa ttgtaatttt      1380
     tcttgcctta ttgttctttg aataaaatcc agaaaaatta tttaaaaaaa tattcaggca      1440
     cttaccactt attttgcttt acttattgat tatgtgtata tagtgccata tctgaactta      1500
     attcaatata tatatatata taataaatac accaaatacg tatacaggtg gtatatacac      1560
     attgcatctg attttttatt ttatttcttt gtgcttgacg tgatttctta tataaatatc      1620
     tatggaggta tatgtatcga ttttgggcaa tctgtatcga aagattaaag ttgccgaaaa      1680
     caataagttt wtcctcacac agtgcaaaaa acttaaaatt atgcctaaat ttctagaaaa      1740
     atcaaacaac cattttggag taattcgtga tacggctaat ctagagaaaa taaacgattc      1800
     aaaaatattt tcaattggaa attattgaac atcttaatta gtgataatgt ataccattta      1860
     aattttctaa aagcagagtt tgaccaaaag gttatcaaat tacaccaaat gataccggca      1920
     aacattattg atagtgttac tagttttaac catagaaaga attggataga aaatcttaga      1980
     caaaagagta ttaagaaaat tgagaatcta aaaaagttma gtttagagca tcwacaaatc      2040
     aaagaaataa aagtagctag cgaaaaatgg tgcatcaatt taacggatag agttattcct      2100
     aaaaatgtac tcgacacaat agcattagga cctggctttg tatgttttga ccgcagtgat      2160
     tataaaaata aaggaattac cgcagcagct aatctatgta gggtggacaa cattgttgcc      2220
     aacttagaaa gtacgcattt tgaatttgaa gctttacaaa atgaagcacg cgtaaaaaat      2280
     gtagacacwg tatcaaaatt tccctttatg acatgaaatt tagggaagaa ccaaaattta      2340
     atgtgaataa ggtaaagaat tgtttcataa attagtaaaa caaggaaatg ttgatacctc      2400
     aaaaattttt gaaagaaaat cccgatattt atattgtcat gcagacaaat gtaacaagtc      2460
     cgtaataatt actgaagaga tgtatcattc aaaatgatgg atttattaaa tgactctact      2520
     gtgtacaaac agataaaaag agatttgtca aatacacaac aattgaagaa taattccatg      2580
     ataaataatt ggtataaaaa taaattcatt agccaggata tgaaagacaa tttaatcatg      2640
     aaagaggcat taccaccaaa aatttatgga ctcattaaaa cacataagcc cggaaatcca      2700
     gtgagaccaa ttgttagttg tatacaatct cccttttaca agatgtcaaa atattttgca      2760
     actattttga gtaaaattgt aggaaagtct aagtttaata ttaaagactc attccatttt      2820
     caaaaatttg ttaagcatca aaaagtaccg gaaaattttg tttttgtttc tttagacgtt      2880
     atttctttat acacaaatgt gcccataaag ttagctttgg aaataatcga taaaaattgg      2940
     cccaaaattg agaaatatac ctcatttccg aaaaaagaat ttttatatgg agtagaaact      3000
     tgtttagtgt ctaatttttt ccagtacaaa gatttatatt tccaacaaaa ttcaggatta      3060
     gcaatgggtg ctccactatc tgcctgtgta gcgaatttgg tgatggaatt tgttgaatct      3120
     gagttattga aaacattaat gttcaaatgc attttttaca aaagatttgt cgatgactgt      3180
     atagcatgta ttcctcgtga aaactgtaac gcatttttaa atcactttaa tagttttcat      3240
     gagtcattac aattcaccat ggaaattgaa attgataaaa aaattaattt tttagattta      3300
     actcttgatc atgttaagaa tgaaaaagtt atgacaaaat ggttccaaaa gcctatacat      3360
     tcaggtaggt atttaaatta tttttcggat gttccttttc atcaaaagtt aaacatggta      3420
     aacaacttgg taaatagagt tgtaacttta actgatcaat gttatttgaa agaatgtatt      3480
     gtaaaaacta aatcaatgtt acaagaaaat ggttatccag aaaattttat agataaaatt      3540
     gtaaaaaaac atcagtataa aaaaaggaat caacaaaatt tgaattcaac cccaaaagcc      3600
     aagtttgtag ctcaaaacat tttaaaaatt ccatatattc ctgttctctc tgaaagtcta      3660
     aaaacagcat tagaaccgat aggagtacaa cccgttttca ctaaaaattt ttctaacaag      3720
     aaattgttta ccaacttaaa aagtaaagtt cctactgaga aaatgtcaaa cgtagtttat      3780
     gaaattaaat gtaaagactg tgagggaacc tatattggac aaacaaagag atatttacaa      3840
     gaaaggatta agtctcacaa atacgataaa aaagaaccca ctgctcttca ccatcatatg      3900
     atagagtgtg cacatgaatt tgattttgag catcccaaag tccttgccag agagaataat      3960
     aggaaggcca gactaacgtt agaagctatt catataaaaa ggtctcaaaa tgcaattaat      4020
     ttcagaaatg acactgtagg tttaagcaaa aggtatgatg ggttttttct ttaggccaaa      4080
     ttaaaatttg tatttttttt tttttttttt tttttttttt tttttttttt tttttttttt      4140
     ttatatgatt catgcggcaa tgtggcaact gtgtgttttt tgctactttt ccgtgtttga      4200
     tttgtttgtg atcttcagtg ctcctttgtc cagggtagac tgcgtctgcg tctctttgtt      4260
     ttctttctgc tctttctttc ttcactattt tcatcatgta accgtttgtg gttcctttat      4320
     tttggttgtt ttttattttt aatgtattta aattttacac tgaagatggc tagtgttttg      4380
     cagccgaaac gtttgtttct taaaatctaa aattgtaatt tttcttgcct tattgttctt      4440
     tgaataaaat ccagaaaaat tatttaaaaa aaatattcag gcacttacca cttattttgt      4500
     ttacttatta ttat                                                        4514
//
ID   Penelope-120N1_LMi repbase;    DNA;    INV; 503 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Transposon from the migratory locust.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-120N1_LMi.
XX
NM   Penelope-120N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-503
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 265-265 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 503 BP; 157 A; 91 C; 92 G; 163 T; 0 other;
     aaataatcac ttgaaaaaca gctcttcggt tgcggaagtt ttggtaaaat ttttacttta        60
     ccatggtttc ggcttcacta ggggagcctt catcagaagt aaaacttttt tacatatgaa       120
     tgtatagtca gcagatggtc ttgagcgata gggctcacgt taaaaattaa aaaagtttgc       180
     acattgcaaa atttttaaaa acaagtaaga caaccgccgc taagggtacg cgaccttagc       240
     ggcggttgtc ttacttgttt ttaaaatttg caatgtgcaa actttttaat ttttaacgtg       300
     agccctatcg ctcaagacct ctgctgacta tacattcata tgtaaaaaac tgttttactt       360
     ctgatgaagg ctcccctagt gaagccgaaa ccatggtaaa gtaaaaattt taccaaaact       420
     tccgcaaccg aagagctgtt tttcaagtga ttattttata ttttgacgaa cggttgctgt       480
     ctttaacagc catgtttaaa att                                               503
//
ID   Penelope-120_LMi repbase;    DNA;    INV; 2389 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-120_LMi.
XX
NM   Penelope-120_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2389
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 266-266 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           341..1825
FT                 /product="Penelope-120_LMi_1p"
FT                 /translation="MNPQPPKLRSQFKVHKLNHPIRPISNSLNSAYHDLAR
FT                 FLHETLKKSFVFQNNYSVPNSHVLVHKVKDLDCGPDTKLFSLDIKNLYTNV
FT                 PVVETLKIVEKNLCQFKKLSSEQITDFMNLINVVVKYNYFEFNGKLYQQDD
FT                 GLAMGNPLAGILADIFINSLEEKFFHKFSTTTLGIVSYSRYVDDILVIYEG
FT                 PTTGIDHIFTLFNGLHENITFTCELENEARQLNFLDLTLTVEENKISFNIY
FT                 RKETYTDQIVPASSMHPQCHKNAFFHSAIHRAISIPLSKEKFEEEINLIKT
FT                 IAVNNEYDPAIVDNILKKKTAKRVTTLGTPIESDQKKKYFSIPFLGPISYQ
FT                 IQRLLRNKYNCNVAFSTNNNLKKNFIHNLKSTCSPLDNSGVYKIVCDTCSS
FT                 YYIGQTGRAFKIRFKEHLLRKNGTNPQNSSFADHLLITGHAPKAIHDLNIL
FT                 HTEKKGHRLDVLEELQIFKHFSRNDGLILNEQLQLRNRSFFNGIKPLLGL"
XX
SQ   Sequence 2389 BP; 759 A; 497 C; 372 G; 760 T; 1 other;
     aaaacggcct tgactatgca aaaatgaagt tcgcaaacca gaattgcttt gacgtagcta        60
     acatagttag taataattca tcaaatgctg tgtacatgat agttaatctt aaataataag       120
     ctaaagaacc gatgctttaa taaccaaatc tgacaaaggt tgttccttgg ttattgctag       180
     caattctgaa tatgtctcta aaaccttaga attttttaat gaaaataata tttcggaact       240
     gcacgaggac ccgaccgcag aattacaaaa agaagtcagg tcggccgtca gtgatgcaaa       300
     atatttgctt aagccatttc ataaaaaaac tctcgttaat atgaaccctc aaccccctaa       360
     acttcgttca cagttcaagg tgcacaaact taaccatccg atcaggccta tttcaaacag       420
     tttgaacagt gcttaccacg atttagccag atttctgcac gaaaccttga aaaagtcctt       480
     cgtttttcag aacaattatt cagttcccaa cagtcacgta ctagtgcata aagtaaaaga       540
     tctagattgc ggcccagata ctaagctctt ttcactggat atcaaaaatc tttataccaa       600
     cgttcccgta gttgaaacgc ttaagatcgt agaaaagaat ttatgtcaat tcaaaaaact       660
     ttcttctgaa caaataactg atttcatgaa tttaattaat gtagtagtca aatataacta       720
     ttttgaattt aacggaaaat tataccagca agacgatggt cttgctatgg gaaatccgtt       780
     agctggtatc cttgccgaca ttttcatcaa ttctctggaa gaaaaattct tccacaaatt       840
     ctctactaca acgttaggca ttgtttccta ttctagatat gtcgatgaca ttttagtcat       900
     ctacgaagga cctaccactg gcattgatca catttttact ctttttaatg gactacatga       960
     gaatatcacc ttcacctgtg aacttgaaaa cgaggctcgt caactgaact ttctcgattt      1020
     gaccttaaca gtagaagaaa ataaaatctc tttcaatatc taccgaaaag aaacatacac      1080
     tgatcaaatt gtacccgcct cttctatgca ccctcaatgt cacaaaaatg ctttctttca      1140
     ttctgccatc cacagagcca tttccatccc actctcgaaa gaaaaattcg aggaggaaat      1200
     aaatttgata aaaaccatag cagttaataa tgaatacgat cctgccatag ttgacaacat      1260
     ccttaaaaag aaaactgcta aaagagttac aacacttggc actcccattg aatctgacca      1320
     aaagaaaaaa tatttctcca ttccatttct ggggcccatt tcctatcaga ttcaacgact      1380
     tcttcgtaat aagtataact gcaacgttgc cttctcgacc aacaataatt tgaagaaaaa      1440
     tttcattcat aatttaaaat caacctgttc tcccttagat aattccggcg tttacaaaat      1500
     tgtttgtgat acttgttctt cctactacat aggtcaaacg ggacgtgctt ttaaaatcag      1560
     gtttaaagaa catcttttga gaaagaatgg cactaacccc cagaattcgt cttttgctga      1620
     ccatcttctc attacaggtc acgcacctaa agccattcat gacctgaaca ttttgcatac      1680
     cgaaaagaaa ggccacagat tagacgtgct cgaggaattg caaatattta aacatttttc      1740
     tcgtaatgac gggcttattc taaatgaaca gttacaactc cgtaatagaa gcttttttaa      1800
     cggtattaag ccgttactcg gtctttgatg ttgtacttcg tgcagtgtcc gaaatatttc      1860
     ttccgacttg atccaaagca tttgtattcc aaaagccaat ttttaactgt tttgcttatt      1920
     aaaactttgt tactcgttta ttctctctac taatattgta ttgccaaaat gacgcctcag      1980
     ccatctctca tgttaaacaa agcattttgt agcaattgtt ttttcaatac tgtttctctc      2040
     tgtacagtag cctagttgta attgcggcta ctagatggca ctactgaggt aacgtcttcc      2100
     tgttcacaac tccacttagc acacgccagt ctgatgcctc cgtgcaggcg tgcagcccat      2160
     agtggctagc tttttctaaa aatttctttt taaattttgt gacgtaagct ttacagctga      2220
     gttgtatatt ttattatgtg acttgtttta ttttataatt tctgatgaag gcaatcatag      2280
     tcattgccga aaccaggtta aataattttt aatttgcgac cgagggctgc wtttttatcc      2340
     tttgacgttg taacggtcgc tgacaatagc agctatgttc aaaatttta                  2389
//
ID   Penelope-121_LMi repbase;    DNA;    INV; 2814 BP.
XX
AC   .
XX
DT   22-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-121_LMi.
XX
NM   Penelope-121_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2814
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 267-267 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(622..771,765..1118,1066..1446,1425..1748,
FT                 1759..2277)
FT                 /product="Penelope-121_LMi_1p"
FT                 /translation="VLIVKGDKGNTVSSSSKMIXDKVNHFLTENGIAEAKY
FT                 DYTSRFQEGLKDVRRLKEINFFTEKEIKXLIVMXPESPYLDGRIKTXKNGE
FT                 PVRPVINGRKGPGAKLMKRLSEMLREWYTYXESFSVKNSSEAANLIQEHXM
FT                 NGDTXLVSLDVTNFVYFSTGRRNNRHYRKLILYTSVPVEETIDIIENNLRQ
FT                 HGKISQVEIDEFIGLLRFTLSFNYFKFNNKFYIQENGLAMGCALAGQMADI
FT                 FLNTYETAFLKENVKHKDKIHIYARYVDDILLVYQGSEEEINDLVNDLTRC
FT                 IRASNKMHKSIAFTVEHEQQGILNYLDLKIENNNNKLKLGIYRKPTFTGAV
FT                 INKKSCHPHSHKTAFFKSALHRVNSIPLTPENKEAEMKALRXIAVENDYDA
FT                 GLIDRLEKTESTTRRKFAQIRVIPFWGPVSYKLARLFKKRDVKIAFRTDNK
FT                 LEHRLKHKIDAGENWMGKAGVYQIKCNDCEMKYIGQTGRNFKVRFKEHSNR
FT                 ENGSSTVAKHLKIERHSLGSINDSLKVMHYEDKGWLLSNLEEIEIFCALRE
FT                 DSSSMLNEKTELSKNHYWAHFSNLLLEKH"
XX
SQ   Sequence 2814 BP; 1010 A; 415 C; 612 G; 767 T; 10 other;
     caaacggtgm gtagaaagtg atatcactcc cacgtgacga aaggttttag aatgaacgtt        60
     aaaagtaatt tttcgaacag attgggtaga atgtttagta atatgggtag gtaatgatat       120
     taggagtgta gaaaaagaag tctctgttag gggaggagct gtatgaaatg catttgcgtc       180
     taaccaattg cttatcaggc gtacagtttg acgagtatat agagatatta gtgattatgt       240
     gtttaaaaag acagagacta tagtcaaaac acatgtaaga aagttgttgg aattgagtag       300
     gaagcacggt tagtaaagag acgatgaagg gggaaaggat atcataacct ctatccaggg       360
     ttaagaactt actgacatac agttttcaag aggaagtctc tctctacata aagtctgaaa       420
     tacaattttc catgacacca acaaccaaaa cattcaagac tagtcgcaac tacgaagacg       480
     attgcagata gtttaaaaat attgcggagg agcaacttaa tttgggtata aagtgaaaaa       540
     ataactgaag gaatttccat cggagggtga atagagaggc gaaaatcttg aaaggagtga       600
     accgtaagct ggaagaaata agtgctgata gtaaaagggg acaaaggaaa tacagtatca       660
     tcatcaagca agatgatatk agataaagtt aaccatttcc ttactgaaaa tggtattgca       720
     gaagccaagt atgattatac cagtagattc caagaggggc ttaaagacgt ttaaaggaaa       780
     tcaatttttt tactgaaaaa gaaataaaga amctcatagt gatgaamccg gaatctccat       840
     acttagacgg caggataaag accsacaaaa acggggaacc ggtgaggcct gtaatcaatg       900
     gtagaaaggg accaggggct aaactaatga aacgattgag tgagatgtta agagaatggt       960
     atacttatma tgaaagcttt tcggtaaaaa atagtagtga agcggctaac ttgatacaag      1020
     agcacgakat gaatggcgac actasattag tgtctttaga tgtgactaat tttgtatact      1080
     tcagtaccgg tagaagaaac aatagacatt atagaaaata acttacgtca gcatggcaaa      1140
     atatctcagg tagaaataga tgaattcata ggactgttaa gattcaccct atcatttaac      1200
     tattttaaat ttaataataa attttacata caggaaaacg gtttagcaat gggttgtgcg      1260
     ttggcaggtc aaatggcaga tatctttctc aacacgtatg aaactgcttt tctaaaggaa      1320
     aatgttaaac ataaagataa aatccacata tatgctaggt atgttgacga tatactttta      1380
     gtatatcaag gctccgagga agagataaat gacttggtta atgatctaac aagatgcata      1440
     agagcatagc attcacagtt gaacatgaac agcaaggaat tttaaattac cttgacttga      1500
     agattgagaa caacaataat aagctcaagt taggcattta taggaaaccc acatttacag      1560
     gcgctgtcat taataaaaag tcatgtcacc cacatagcca caaaacagcc ttttttaaaa      1620
     gtgcacttca tagagtaaat tcaattccgt tgacccctga aaacaaggaa gctgaaatga      1680
     aggctcttag acakatagcc gtagaaaatg attatgacgc gggtttgata gacagattag      1740
     aaaagacata acacctaaga atcmactacg cgaagaaaat tcgcacaaat tagggttata      1800
     ccattctggg gacccgtctc ctacaaattg gcgagactgt ttaaaaagag agacgttaaa      1860
     attgctttta gaacagacaa taaattagaa cataggctga agcataagat tgatgcaggt      1920
     gagaactgga tggggaaagc gggggtatac caaataaagt gtaatgattg tgaaatgaag      1980
     tatataggac aaacgggaag gaattttaag gtgcggttta aagagcacag taatagagag      2040
     aatggctcat ctacagtggc aaaacacctg aaaattgaac gacattcgtt gggctccata      2100
     aatgatagtt tgaaagtcat gcactatgag gacaaaggtt ggttattatc aaatctcgaa      2160
     gaaattgaga tcttttgtgc gttgagagag gattccagca gcatgctcaa cgaaaagaca      2220
     gaactatcta aaaaccatta ctgggcacat tttagcaacc tcctccttga gaaacactga      2280
     tgtgtgtgca tgtattaaat atcgacttct tgcttttaac ttcactgaaa aatttagagc      2340
     gtagttccgt tacaaaacct ttaatttagt gactgatttt atgaataaat gttaggtatc      2400
     ttgactagaa tatctttggc caccaatgac agcggttaag catatggaca atctttgaag      2460
     ttggatcagc tgtccgttag tgcacaactt gctgccatct gagaaacatg tggtactgcg      2520
     caaagtttta tttttgacaa tgtacataca cagctattgt gtttaacgat gcttcctagc      2580
     agcagataag ttttatggta ggtaggaggt tagtttcatt ggaatatttg tggtacagtc      2640
     gtttgtatat agtgccctta ttattctacg tttccttgtt ttacagaact tgataatggg      2700
     ataatgtcgt cccgaaacat gtcgtgttga catatatatt ttattattga caactggtgc      2760
     gtgaagtaca gtaataattg tgaaacagtt gtgtgatggc gtcaaaacag atga            2814
//
ID   Penelope-12B_LMi repbase;    DNA;    INV; 2499 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-12B_LMi.
XX
NM   Penelope-12B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2499
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 129-129 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2499 BP; 689 A; 621 C; 580 G; 609 T; 0 other;
     tgtaggaatg cattgtggcg atactttgaa taaaaagttc tcgggtttcc gtccgcgtca        60
     ggtggttaaa actccacgag ctttcggcca agcactcctt ggccattgtc aagtggtact       120
     gactgcctag tggctgcaag tacgggctat atacatagct gccggctgtg acgtcactgg       180
     tgctccgcga catcgccata tatgggcatg ctttgagtcg gtgttgatgc gcccgtttta       240
     actgcgcgat cgctggatcc acgcgcgctg agctgcaggc cgccgttctg ttaaggttgt       300
     tatcagatgt ttacatggct tctttaataa tactgtccca gaagccgttc tgcgagccac       360
     gacggcagtt tcatcgaatt tgatgcgatg accgtttact aaagcatgct cactaaagcg       420
     atttgtctgg gtaccgtaaa cgataaaacc tttcatgttc cttccttcgt tgttcaacag       480
     ttcgtactgt ttgtccgaca taagactggc cacactcgca agatatcttg tagaccccag       540
     gtgttctgag acctactgcg tctttaactg gtctcagtaa ttgccggatt ttcgtcgggg       600
     acctgaacat aagtggcgtc gaacaccagt gaacacaaat acacacccaa catgacaggg       660
     ctgagcgcaa tggactacgt gcactagatg ggattagtct tcccgcttcc gtcattagga       720
     atatgaggac tatacagaaa gatctgcacg ctacaaggta cttaccagaa gctcccacgc       780
     gatccaacat caagaataat gaggaagaca tctgaacttc ttaagaaatc tttggtagaa       840
     gacaatgtgg ttaagaatct tctcccacag gtccaagacc acccacagca tatgctttac       900
     cgaagatcca caaagacggg acacccttcc gcctcatcgt gtccaccatt ggttcaccaa       960
     catacaagct tgcgaaatac ctggccaata tccccgctcc acatgtggga cgctgtgaac      1020
     atcacatcaa gaactcagcg gatttcatca accgaattaa ccatcttcga cttggtgagg      1080
     atgacattat ggtcagtttc gatgtggtgg ctctgtttac gaatgtgcct atcaaagact      1140
     ctttggaatt agtgtcccag ttctttgcaa gtgaagtggt cgagctattt aggcacacac      1200
     ttacgtcttc ctattttctg tacaacggcc agtattatga tcagacggac ggcgttgcaa      1260
     tgggaagccc gttagctcca gctgttgcga acctcttcat ggagaatttt gaaaatattg      1320
     ccttagacac ggcgccatta aagcctaaat gtttcttccg atacgttgac gatacgttcg      1380
     ttatttggcc acacggacgt gagaaacttg acgagttctt agaacatctg aacagcatca      1440
     acactaacat ccagttcacc atggaggtag aaaaagagag tacattgccc ttcctcgacg      1500
     ttctcgtccg tcgcaaacgg aatggatgcc ttggtcacag cgtctataga aaaccttccc      1560
     acactgatct gtacttgcac gccacaagcc atcatcaccc ggcacagaag cgcactgtat      1620
     tgcaaacttt ggcacatcgt gcaaaaacag tatcagacgc cgataacctg ccccatgagt      1680
     tgaaacatct acgcaaggtc ttcaggaata atggctacaa tgatcgtgaa ataagtgatg      1740
     cgatctcagg aaggaaacac aataagacca ctgacgagga agaaggaaag aaacttgctt      1800
     ttttgccgtt ctgtggttct gtgtcgggca aaataagccg cctgttgaag agacacaaga      1860
     tcaaatcagt cttcaggccc ccgacgaaaa tccggcaatt actgagacca gttaaagacg      1920
     cagtaggtct cagaacacct ggggtctaca agataccttg cgagtgtggc cagtcttatg      1980
     tcggacaaac agtacgaact gttgaacaac gaaggaagga acatgaaagg ttttatcgtt      2040
     tacggtaccc agacaaatct gctttagctg agcatgcttt agtaaacggt catcgcatca      2100
     aattcgatga aactgccgtc gtggctcgca cgaacggctt ctgggacagt attattaaag      2160
     aagccatcga aattaaaaca tctgataaca accttaacag agacggcggc ctgcagctca      2220
     gcgcggcgtg ggatccagcg atcgcgcagt taaaacgggc gcatccaaca ccgactcaaa      2280
     gcatgcccat atatggcgat gtcgcggagc accagtgacg tcacagccgg cagctagtgt      2340
     atataagccc gtacttgcag ccactaggca gtcaatacca cttgacaatg gccaaggagt      2400
     gcttggccga aagctcgtgg agttttaacc acctgacgcg gacggaaacc cgagaacttt      2460
     ttattcaaag ttatcgccgc gagacaatgc attcctaca                             2499
//
ID   Penelope-12_LMi repbase;    DNA;    INV; 2316 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-12_LMi.
XX
NM   Penelope-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2316
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3418-3418 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(93..662,530..1303,1297..1584,1520..2188)
FT                 /product="Penelope-12_LMi_1p"
FT                 /translation="MALHLQLTRMLTLWTGNGSTSHCFATNSAQKRSTEKQ
FT                 KGKFCRLSQQQHGADHRSSERTVINLTAREIDTGAISALKKGLNFAPSPRD
FT                 IPICDIISGVEQAIHKLPSETADEIRRETSRILTKSKPPAPNMTRAERNGL
FT                 RTLRNDESIVVLPATRGTPLSLWNTRTTIRRSARYWTRILTGSSHATQRQE
FT                 EHCGPSRDKGNAAVIMEYEDYNTKICTLLDEDTYRKLPRDPTSRIIRKTSE
FT                 LVKNSSLEDSVVKNLLPQAPRPPTAYGLPKIHKDGTPFRLIVSTINSPTYK
FT                 LAKYLANLLAPHVGRCEHHIKNSADFIDRINHLRLSESDIMVSFDVVSLFT
FT                 NVPIKDSLDLVSQLFVSDVVELFKHTLTSSYFVYNGQYYDQTDGVAMGSPL
FT                 APAIANLFMENFEDVALETAPLKPRCFFVRRRHVRHLASREREAWRVLGTS
FT                 KQYTVLTRTSNSPWRRKRQRTALPRCPCPSETKWMPWSQRLQKTYSHRSVL
FT                 ARQQPSSPGTEAHGITNIGASCKKNMMPTTCPRIEPPTQCSGPWIQSPCQQ
FT                 PAHELNHLHSVQDHGYSRHEINVISDKNHSKKTDEEQEKKLAFLPFCGSVS
FT                 GKISRLLKRHKIKSVFRPPAKIRQLLRPVKDAAGLRTPGVYRIPCECGQSY
FT                 VGQTVRTVEQRRKEHERCYRLRYPEKSALAEHALENGHRIKFDDTSVVART
FT                 NGFWDCVIKEAIEIKISDNTLNRDGGLQLNAAWNPAIAKLKRARRPPSQNI
FT                 TIYGDGTDTSDVTAGS"
XX
SQ   Sequence 2316 BP; 684 A; 593 C; 545 G; 494 T; 0 other;
     cctccaggag atatatctcg tgcaagcttt gccctgctac gagaaaggat tcagacacca        60
     ggcaacagct ggatagaaat ggacgtactc tcatggcctt gcatctgcaa ctaacaagaa       120
     tgctcacact ttggactggg aatgggtcga ccagccactg tttcgcaacg aactcagcac       180
     agaaacggtc tacagagaag cagaaaggga agttctgtcg cctctcgcaa caacaacatg       240
     gtgcggacca cagatcctca gaacgcaccg tcatcaatct gacggcgaga gaaatagaca       300
     caggtgcaat atcagcactt aagaaaggtc tcaattttgc accttcgccg cgggacattc       360
     ctatctgtga tataataagt ggcgtcgaac aagctatcca caagctcccc agtgaaactg       420
     cggacgaaat acgacgtgaa acgagtcgta ttctgacgaa atctaagcca ccagcaccca       480
     acatgaccag ggctgaacgc aatggcctcc gcacattgcg caatgatgag agcattgtgg       540
     tccttcccgc gacaagggga acgccgctgt cattatggaa tacgaggact acaatacgaa       600
     gatctgcacg ctactggacg aggatactta ccggaagctc ccacgcgacc caacgtcaag       660
     aataataagg aagacatctg agcttgttaa aaactcgtcg ttggaagaca gtgtggtcaa       720
     gaatcttctc ccccaggcac ctagaccacc tactgcatat ggtttaccga agatccacaa       780
     agatgggaca cccttcagac tcattgtgtc taccatcaat tcaccgacat acaagctcgc       840
     gaagtacttg gccaatctcc tcgctccaca tgtgggacgc tgtgaacacc atataaaaaa       900
     ctcagccgat tttatcgacc ggatcaacca tcttcgtctc agtgaaagtg acattatggt       960
     cagtttcgat gtggtgtcac tctttaccaa tgtgcctatc aaggactcct tggaccttgt      1020
     atcccagctc tttgtcagtg acgtggtcga gctgtttaag cacactctta cgtcttccta      1080
     ttttgtatac aacggccagt attacgatca gactgacggt gttgcgatgg gaagtccgtt      1140
     ggctccagct attgcaaacc tcttcatgga gaatttcgag gatgtggccc tagaaacggc      1200
     accattaaaa cctaggtgtt tcttcgtacg tcgacgacac gttcgtcatt tggcctcacg      1260
     ggagagagaa gcttggagag ttcttgggac atctaaacag tattaacaag aacatccaat      1320
     tcaccatgga ggagaaaaag acaacgcact gcccttcctc gatgtccttg tccgtcggaa      1380
     acgaaatgga tgccttggtc acaacgtcta cagaaaacct actcacacag atctgtactt      1440
     gcacgccaac agccatcatc acccggcaca gaagcgcacg gtattacaaa cattggtgca      1500
     tcgtgcaaga aaaatatgat gccaacaacc tgcccacgaa ttgaaccacc tacacagtgt      1560
     tcaggaccat ggatacagtc gccatgaaat aaatgtgatt tcagataaaa atcacagtaa      1620
     gaagacggac gaggaacagg aaaagaagct tgctttcttg ccattctgtg gctctgtgtc      1680
     aggcaagata agccgcctgc tgaaaagaca caaaatcaaa tcggttttca gacctccggc      1740
     aaaaattcgt caactactga ggccagttaa agatgcagca ggtctcagaa cacctggagt      1800
     ctataggata ccgtgtgagt gtggtcagtc ttacgtcgga caaactgtac gaaccgtaga      1860
     acaacgcagg aaggaacatg agaggtgtta tcgtctacgc tacccagaga agtcagcttt      1920
     agcagaacat gcgttagaaa acggccaccg aatcaagttt gatgatacct cggtcgtggc      1980
     tcgcaccaac ggtttctggg attgcgtaat taaggaagca atagaaatta aaatcagtga      2040
     taacactctc aatagagacg gcggcctgca gctcaacgcg gcgtggaacc cggcgatcgc      2100
     gaagttgaag cgggcacgcc ggccaccgag ccaaaacatt accatatatg gagatggcac      2160
     ggacaccagt gacgtcacgg ccggcagcta gcgtatataa ggccgcacca gcagccacca      2220
     ggcagtcata ccacttgaca atggccaagg agtgcttggc cgaaagctcg tgggatttta      2280
     accacttgac gcggtcggaa acccgagaac ttttca                                2316
//
ID   Penelope-12_TrVa repbase;    DNA;    INV; 2706 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-12_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2706
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 625-625 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           339..2216
FT                 /product="Penelope-12_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MCRVENIVANIESLQFDFEALKNETRMKTVDTLTKFL
FT                 QGVNTGKNQKQNNKNLGKQVFLETVNKGISVTKKFLKDNPDLFVINADKSN
FT                 KSVIITEEMYHGKMMELLSDKKVYKQINRDLSNTQQLKNNLMVNNWLKSKF
FT                 ISKETQERLIMKEALPPKIYGLIKLHKNGNPIRPIVSCIQSPFYKMSGFLG
FT                 KILSNIVGQSKYHVKDSFHFQKFIKHQTVPNDFMLVSLDVISLYTNIPIDL
FT                 ALKVVGDNWSKIEKLTKLPKKEFLYGVEVCLRSTFFQFEDLFFQQVSGLAM
FT                 GGPISAVIANLVLESAEKELMSTLPFKCIFYKRFVDDCLLCVPKSKGNMLL
FT                 DHFNSFHNSIQFTLEEEVDKTINFLDLTIDHLSDGKIMTKWYQKPTHSGRY
FT                 LHYFSDAPYQHKLNVVKNLANRVVTLTDFRYQAQSIDKAKTILGENGYPET
FT                 LLNKIFKNELAKRRFGRKENVRPKFDLDKAVKLPYIPGLAEKFKFSFKQTD
FT                 IKPIFTNSFTNKKLFTNLKSKTPTEKESSVVYEINCKDCDKSYIGQTKRYL
FT                 QERIKSHKYDKKEKTALHKHMEDTGHIFDFENPRVLAKEKNRQARLVLEAI
FT                 HIKKKKSSAINFRTDADQVSSRYDCFFA"
XX
SQ   Sequence 2706 BP; 938 A; 402 C; 466 G; 894 T; 6 other;
     aaaatagatc atctaaaaaa ggattttgac cgtaaagtcg ttgaattaca tcaatcttta        60
     cctatcaaca tagtagacag agtaattttg tatagcasgg acaacaattt gtcaacaaaa       120
     cttmgacaca atagtttgaa aaaattgagt ttttagtcgg aacaagcaag atacattgtc       180
     awaatatcaa aattcaagaa gcatgtaaaa attggtgcgt caatttatca gataagaata       240
     ttcctacggc tgtttcagat acactagcat taggtccaaa ttttkccctk tttaatggta       300
     aggcctatca gggaaaagga ataactgaaa taggaaagat gtgccgtgtt gaaaatattg       360
     tggctaacat agaaagtttg caatttgatt tcgaagcctt gaaaaatgag actcgtatga       420
     aaactgtaga caccttaacc aagtttctgc agggtgtaaa tactggcaaa aatcaaaaac       480
     aaaacaacaa aaatttggga aaacaggtgt ttttagaaac cgtaaacaaa ggaatcagtg       540
     tcaccaaaaa atttttaaaa gataacccag acctttttgt aatcaatgca gacaaaagta       600
     ataaatctgt tattattact gaagaaatgt atcatgggaa aatgatggaa ttgttaagtg       660
     acaaaaaagt atacaagcaa attaataggg atttatcaaa tacccaacag ctgaaaaata       720
     acttaatggt aaataattgg ctcaaaagta agttcattag caaagaaaca caagaaagac       780
     taatcatgaa ggaagcttta cccccaaaaa tctacggttt aataaagtta cacaaaaatg       840
     gaaatcctat tagaccaatt gtgagctgta tacaatcacc tttctataag atgtctggtt       900
     ttttaggcaa aattttgagc aacattgtag gtcaatcaaa atatcatgtt aaagattcgt       960
     ttcattttca gaaattcatt aaacatcaga ctgttcctaa tgatttcatg cttgtatccc      1020
     tggatgttat ttctctttat acaaatattc ctatcgatct tgcattgaag gtcgtcggtg      1080
     ataattggag taaaattgaa aaattaacta agctgcctaa aaaagaattt ttgtatggtg      1140
     ttgaagtatg tttaaggtca acgttttttc aatttgaaga tttatttttt caacaagtct      1200
     caggcttagc aatgggtggc ccaatttcag cggttattgc caatttagtt ttagagagtg      1260
     cagaaaaaga gctaatgagc actttacctt ttaaatgtat tttttacaaa agatttgtag      1320
     atgattgcct attgtgtgtt cctaaaagta aaggtaatat gctgttagac catttcaaca      1380
     gttttcacaa ttcaattcaa tttaccttag aagaagaagt tgataaaacg attaattttc      1440
     tggatttaac gattgatcat ttaagtgatg gaaaaattat gactaaatgg taccagaaac      1500
     ctacccattc tgggaggtat cttcactatt tctcagatgc cccatatcaa cataagctta      1560
     atgtagtaaa aaatttggcc aacagagtgg taactttaac tgattttaga tatcaggcgc      1620
     aaagcattga taaagcaaaa acaattttag gtgaaaatgg ctacccagaa acccttttaa      1680
     acaaaatatt taagaacgaa ctagccaaac gtcggttcgg taggaaggaa aatgttcgcc      1740
     ctaagtttga tttagataaa gcagtgaaat taccgtatat tccgggtttg gcagagaaat      1800
     tcaagttttc atttaagcaa actgatataa agcctatttt tacgaattcg ttcactaaca      1860
     aaaagttatt tacaaattta aaaagtaaaa ctccgaccga aaaagaatcg tctgttgttt      1920
     atgaaataaa ttgcaaagat tgtgataagt cgtacatcgg acaaaccaag agatatttgc      1980
     aggagcgtat taaatcacat aaatacgata aaaaagaaaa aactgctttg cataaacata      2040
     tggaggatac gggccatatt tttgattttg aaaatcctag ggtgctagct aaagaaaaaa      2100
     ataggcaagc gaggcttgtg ctagaggcta tccacatcaa aaaaaagaag tccagtgcaa      2160
     ttaatttcag gactgatgcg gatcaagtta gctctaggta tgattgtttt tttgcttaag      2220
     ttattgcaca tcttgcaagt gcgcaaattg tgaatccatt gcggaactat ctttgtttgt      2280
     ttttatgtta agggcaaggt tttttttttt tttttttttt tttttttttt tttttttttt      2340
     tttttttttt ttgtaaatcg tgcaactgtg taaatcgtgc aactgtgtaa attcattttg      2400
     actgtttgtt ttcgtgttat gtaagtatcg gtctctcgct tccaacggcc tcactaatta      2460
     ttcagtttat ttttcacgtc caccatgttc tcggctgtgt tatttccaga tttaattgtt      2520
     attattatat ttttcactga tgatggccgc ggtgttccgg tcgaaacgtc tgwtccaact      2580
     aaatagttca ttttttcact tgtttttcta aataaaaatc tgtgataaat gataatcatg      2640
     tgttatggct gttcagctta ttattctcat catcttttac atatgtacta gccaacttta      2700
     atctta                                                                 2706
//
ID   Penelope-13_LMi repbase;    DNA;    INV; 2772 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-13_LMi.
XX
NM   Penelope-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2772
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3419-3419 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           281..2704
FT                 /product="Penelope-13_LMi_1p"
FT                 /translation="MRSRCLLESCSPSSVHGSHLNRGLENSHVTNLSGTEF
FT                 DDTTLKVLSKGLNFATTPRNVPISGFISAVEQVAATLPPNVAEEVRRETCR
FT                 ALTNARPPKSNITAEERLALRKLREDSSIVILPADKGNSTVIMKRVDYDEK
FT                 VRQLLGDPAYRTLECDPTDKVDKKTKALLKETGMPEKIIRQLRAKAPVPPR
FT                 LYSLPKIHKEGVPLRPIVSNIGAPTYETAKYLKNLLSPHVGKCVHHIRNSE
FT                 DFLQRLKQLRITDSDIMVSFDVVSLFTRVPLQDSLDLIAEKFDGALLDLFR
FT                 HTLTSTYFLYGNQYYEQTEGVAMGSPLSPVVANMFMERFEERALETARYKP
FT                 TCFYRYVDDTFVIWPHGKDRLNEFLEHLNSCHPNIKFTMELEKNGQLPFLD
FT                 VLVRRKADGSIGHSVYRKPTHTDLYLQASSCHHPAQKNGVLKTLVHRARAL
FT                 SDQESLPTEIEHLKTVFYKNGYTTRQIEMALQPATTPEVPEAEEDEAKKMA
FT                 YLPYAGSISARISRILRKHNIKCVFCPASKIRGLVGNVKDDLGLRKPGIYS
FT                 IPCQCGMSYIGQTTRTVDIRCKEHQRHTRLRQVTKSAIAEHCLELDHVMNY
FT                 DDTKILAQTPRFWDSVIKESIEIKVADNLMNRDTGYQLSRAWDPALELLKK
FT                 QRGQHQYNTDTSAGGMDMQNVPQAEHQEDGTEDTTSRSGHNGRGPQRERQT
FT                 EDEALRGGYDGRGPQREHPGLQRTENRTSAPQNTSASGRGPQTERQTADGR
FT                 SEAGLTGADHRGSTYNRQWRGKAADINTGPGPLRKQSQVAPDEGYELRSRN
FT                 IVQSRH"
XX
SQ   Sequence 2772 BP; 844 A; 686 C; 721 G; 521 T; 0 other;
     cacacctgat gaaggttatg agctactagc cgagtgacct gcaccggcag aacacccgac        60
     acccattatg tcattagatc gcgggaaagc tgaagagttc aaaagactct acagggagga       120
     gataccagaa cataagaagc tggataagct tcgcagaaga aaaaaatgtg agttctctca       180
     gtttcctgcc gagatggaga cgtggtacca ttcgccaatc aaacatcgta tcatccaggg       240
     ggcaacaaga taaaacgcac tggtgagaag agaatcgaac atgcgcagta gatgtttgct       300
     agagagctgt tcaccttcat ctgtacatgg cagccacctt aacaggggtc tggaaaactc       360
     gcacgtgacg aatctgagtg gcacagagtt tgatgataca accttaaagg ttctcagcaa       420
     gggtctcaac ttcgcaacga cccctagaaa tgtgcccatc tcaggtttca tcagtgcagt       480
     ggagcaggtt gcagccacac tcccacccaa tgtggcagag gaagttcgcc gagagacttg       540
     cagggcgctc accaacgcca gacctccaaa atcgaacatc acagctgagg agaggcttgc       600
     actcaggaag ctccgggaag acagcagtat tgtaatactc ccagcagaca aagggaactc       660
     tacagtcatt atgaagcggg tggattatga tgagaaggtg cgccaacttc ttggggaccc       720
     tgcttacaga actttggagt gtgaccccac tgacaaggtg gacaagaaga caaaggctct       780
     cctgaaggag acaggaatgc ctgagaagat catcagacaa cttagggcaa aggcaccagt       840
     acctcctaga ttgtacagtc ttcctaaaat acacaaggag ggtgtgcccc tacgcccaat       900
     tgtcagtaat attggggcac ccacgtatga aacagccaag tacttgaaga atctgctttc       960
     tccacatgtg gggaaatgtg ttcaccacat ccgcaactca gaagacttcc tgcaacgcct      1020
     caagcaacta cgcatcacag actcagacat catggttagt tttgatgtgg tatcgctgtt      1080
     caccagggtc ccactgcaag actcactaga cctgattgca gagaaatttg acggcgctct      1140
     attggacctg tttagacata cgctgacctc cacatacttc ctgtatggga accaatatta      1200
     tgaacaaaca gaaggtgtag ctatgggcag ccccctgtct cctgtggttg ccaacatgtt      1260
     catggagaga tttgaggaga gggcattaga gacagccaga tataaaccca cctgcttcta      1320
     taggtatgtg gatgatacat tcgtgatctg gcctcatggg aaggacaggc tcaatgagtt      1380
     tcttgaacac cttaactcat gccacccgaa catcaagttc accatggaac tggagaagaa      1440
     tggacagctg ccgtttctgg atgtactagt aagaaggaaa gcagatggat caattggcca      1500
     cagtgtgtat cggaaaccga cacacactga cttatacctg caggccagca gctgccacca      1560
     tcctgcgcag aagaatgggg tcctcaagac attagtccac agagcacgtg ccctgtcaga      1620
     ccaagagagt ctacctacag aaatagagca ccttaaaaca gtgttctaca agaatggata      1680
     tacgacaaga caaattgaga tggcactcca accagccact acaccagagg ttccagaagc      1740
     agaggaagat gaagcaaaga agatggcgta tctgccctat gctggttcta tttctgccag      1800
     aatcagtagg atcctacgta aacacaacat caagtgtgtc ttctgtccag ccagcaagat      1860
     caggggcttg gtgggaaatg taaaagacga cctggggtta cggaaaccag ggatttatag      1920
     catcccttgt caatgtggaa tgtcctacat tggccagacc accagaacag tggacatcag      1980
     gtgcaaggaa catcagaggc acacccgatt aaggcaggtg acgaaatcag ccattgctga      2040
     acactgtctg gagctggatc atgtcatgaa ctacgatgac accaagattc tggcacagac      2100
     acccagattc tgggacagtg ttattaagga gtcaatagag atcaaagtgg ctgacaatct      2160
     catgaaccga gacacaggct accaactaag tagagcctgg gaccctgctc tggaactatt      2220
     aaagaagcaa cgaggacagc accagtataa cacagacaca agcgctggag gcatggacat      2280
     gcagaacgtt ccccaagcag agcaccagga ggacgggact gaagatacaa cgtccaggag      2340
     cgggcacaat gggcgcggac cacagaggga gcgccagacc gaagatgaag ctctcagagg      2400
     cgggtacgat gggcgcggac cacagagaga gcacccaggg ctgcagcgga cggaaaacag      2460
     aacatcagcg ccccagaaca cctcagcgag cgggcgcgga ccgcaaacgg agcgccagac      2520
     cgcagatgga cgatcagagg cgggtctgac gggcgcggac cacagaggga gcacctacaa      2580
     ccgccagtgg agggggaagg ccgcagacat aaatactgga cccggtccac tcagaaagca      2640
     gtctcaggtc gcacctgatg aaggttacga gttacgtagc cgaaatattg tgcagagtag      2700
     acactgacat ccggcagaac acccgactac ccatcatgtc actagatcgc cgggaaagcc      2760
     tgaagagtta ca                                                          2772
//
ID   Penelope-13_TrVa repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-13_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4146
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 626-626 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           1645..3915
FT                 /product="Penelope-13_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MLNVCICEAHQEEKNLRNEIITCINFLKKQLPPTVLN
FT                 DFISSLTERNLNFKFVCKNRLRAKLINLKSAAWQKYHQTFESFLSKRKNWV
FT                 ENISDKHLPDFASRVLCLGQNFSVPFFESAFKSVPLDKIISTIESKIKYEL
FT                 QPMVSRMRNGIVSAISTYFHSVKKVCRPERLNVTSVNIFRDCFFMKSLNVD
FT                 IKKTKNFIKNNPDICVVKADKTSKTVVMNKQDYSDKMKALLNDRHVYKEIK
FT                 QTLVPSQIKKNNFIVNHWLEKKYISKEVADSLHCNSAVVSKIYGLVKLHKP
FT                 GLPIRPIVSTIESPFWRCSKFLGGILSNIVGKNEYSVKNSFEFFNAINDQI
FT                 IPPDYELISLDVTSMYTNISVDLAIECVEERWDEIEKFCSISKDQFLHMLR
FT                 VCVSSTVFQFEERYYRQIHGLAMGGCVSAVLANIVMERFELCVLNTIPFLV
FT                 YFYKRYVDDLFLVVRKDNVPSVFDFFNAQSTDLQFTLEREANNELNYLDMT
FT                 LVREEGRIFCKWYQKKTSSGRYLNYLSVQPLNYKLNTISNLALRILRLTHV
FT                 KYRHEMIQIGKRLLLENCYPLNLITSVFRKVLKKIDEYPTRIVEKPAIDPS
FT                 KIICLPYVPLLSENLQAFLLNFDFKVVFKQYNNLQFLFTPLKAKTPTISKS
FT                 GVVYKIPCSDCSMSYIGQTGQQLGSRLNGHKYNRREVTALHRHEDSLDHHF
FT                 NFDNVTVLAVEKNDHARCILESIHIVKNKNSVCNLKTDTDKLCGSYRRMFD
FT                 EDQSTI"
XX
SQ   Sequence 4146 BP; 1303 A; 652 C; 734 G; 1457 T; 0 other;
     acacggcaaa aaatggcaat acagtatgac aaaaatgcct ccttaaaaac tggcaacacg        60
     gtagatttgt tgaaaaaacg acaaaaaatg gcaacacggc aaaaaatgac aatactgtaa       120
     gacaaaaaat gcctctttaa aaaaattggc aacatgtgga aattgttaaa aatggcaaca       180
     cggcaaaaaa gtggcaatac gttatgacaa ttgaaagttg gcaacacgta gattcgttaa       240
     aaaatggcca aacgctaatg caaaattagc tgaaccaaaa tggcaacacg gagaacaaag       300
     caggaataaa gaattcaaaa aattgatcaa agtaataaaa ttaaaattaa aagtttcgga       360
     ataaaaacat tggttaataa acaacacaaa aaaatcaaat caatctgtct gcatagattc       420
     agtactgtaa ttcggacaaa taatcgtaga aaaaaaagct tagatgaata gcttttaggt       480
     tacattaccg ttactcagta ttcactcgga aaacacacgc ttacttaaac caattccaca       540
     caaaacaacc cagtgtaata ataaataaag attttcctaa aatagcccga atacatataa       600
     agaaaaaatt gaacactaaa atcgggaaac aaggctaaaa aaataattat aaaacacaat       660
     ttaaaacaag aaagaaacca aaacgtttcg gagccaaacg actccctcct cagttggcta       720
     aagaatgcaa cgaggtaaca aagcaaatac acaaagcgaa taacagacca acaaaataat       780
     agataggaaa ctcaaatggt cgactggtcg actggtccta tctattattt tgttggtctg       840
     ttattcgctt tgtgtatttg ctttgttacc tcgttgcatt ctttagccaa ctgaggaggg       900
     agtcgtttgg ctccgaaacg ttttggtttc tttcttgttt taaattgtgt tttataatta       960
     tttttttagc cttgtttccc gattttagtg ttcaattttt tctttatatg tattcgggct      1020
     attttaggaa aatctttatt tattattaca ctgggttgtt ttgtgtggaa ttggtttatg      1080
     taagcgtgtg ttttccgagt gaatactgag taacggtaat gtaacctaaa agctattcat      1140
     ctaagctttt ttttctacga ttatttgtcc gaattacagt actgaatcta tgcagacaga      1200
     ttgatttgat ttttttgtgt tgtttattaa ccaatgtttt tattccgaaa cttttaattt      1260
     taattttatt actttgatca attttttgaa ttctttattc ctgctttgtt ctccgtgttg      1320
     ccattttggt tcagctaatt ttgcattagc gtttggccat tttttaacga atctacgtgt      1380
     tgccaacttt caattgtcat aacgtattgc cacttttttg ccgtgttgcc atttttaaca      1440
     atttccacat gttgccaatt tttttaaaga ggcatttttt gtcttacagt attgtcattt      1500
     tttgccgtgt tgccattttt tgtcgttttt tcaacaaatc taccgtgttg ccagttttta      1560
     aggaggcatt tttgtcatac tgtattgcca ttttttgccg tgtttttttt tttttttttt      1620
     tttttttttt tttttaaaaa gaaaatgctc aatgtgtgta tttgtgaagc ccaccaagag      1680
     gaaaaaaatt tgagaaatga aattattaca tgcattaatt ttcttaaaaa acagttgcca      1740
     cctacggtat tgaatgattt tatcagctct cttacagaaa ggaatttgaa ttttaaattt      1800
     gtgtgtaaaa ataggttgcg ggctaaactt atcaacttga aaagtgctgc ttggcagaaa      1860
     tatcaccaaa cctttgagtc ttttttgtcg aaaaggaaaa actgggttga aaatatttcg      1920
     gacaaacatc ttcctgattt tgcctcgaga gttttatgtc tcggtcaaaa tttctcggtt      1980
     cctttttttg aatctgcttt taaatctgtc cccttagaca aaattattag tactatcgaa      2040
     agcaaaatta agtatgagct ccaacctatg gtttcacgta tgcggaatgg tattgttagc      2100
     gccatctcaa cttattttca ttctgtcaag aaggtatgca gacctgagcg tttaaatgtt      2160
     acttccgtta atatttttcg tgattgtttt tttatgaaat ctttaaatgt agatattaaa      2220
     aagacgaaaa atttcatcaa aaataatcct gatatctgtg tggttaaggc agataagact      2280
     agtaaaactg tagtcatgaa taaacaggat tacagtgata aaatgaaagc attgttaaat      2340
     gaccgtcatg tttataagga aattaagcag actttagttc catctcaaat taaaaaaaat      2400
     aactttattg tcaatcattg gttggagaaa aaatatatct cgaaggaggt tgctgattca      2460
     ttgcattgca attcagctgt tgtttctaag atttatggtc ttgtcaaatt gcacaaacca      2520
     gggttgccaa ttcggcccat agtaagtacc attgaatcac ctttttggag gtgctctaaa      2580
     tttttaggag gtattttatc taacatcgtt ggtaagaatg aatattctgt aaaaaattca      2640
     tttgaatttt ttaatgctat taatgaccaa attattcctc ccgattatga gcttatatct      2700
     ttagatgtga catcaatgta cacaaacata tcagtcgatc ttgctatcga gtgtgttgaa      2760
     gagagatggg atgaaattga aaagttttgt tccatctcca aagatcaatt tcttcatatg      2820
     ctccgcgttt gtgtgtcttc cactgtattt caatttgagg aaaggtacta tcgacagatt      2880
     catggtttag ctatgggtgg atgtgtttca gccgtgcttg ctaatattgt tatggagaga      2940
     tttgagcttt gtgttcttaa caccatccct tttctagtgt atttttacaa aagatacgta      3000
     gatgatcttt tcttagtcgt tcgtaaagac aatgttcctt cagtctttga ttttttcaac      3060
     gcacagtcaa ccgatttgca atttacactg gaaagggaag caaataatga acttaactat      3120
     ttggacatga cactggttag ggaggagggg aggatttttt gtaaatggta tcagaaaaaa      3180
     acatcatcag gaaggtattt gaattatttg tctgtacaac cattgaatta taaactaaat      3240
     accatcagta atttggcgtt gcgtattctt cggttaacgc atgttaagta cagacatgaa      3300
     atgattcaaa ttggtaaacg tttattgttg gaaaattgtt accctcttaa cttaattaca      3360
     tctgtgttta gaaaagtttt aaagaaaatc gacgaatacc ctaccaggat agtcgagaaa      3420
     ccggctattg acccatcgaa aattatttgt ctaccatatg tcccactgct ctccgaaaat      3480
     ttacaggcgt ttttactcaa ttttgatttt aaagtggttt ttaagcagta caataatctt      3540
     cagtttttat ttactccatt gaaggcaaaa acacccacta tttctaaatc tggtgtagtt      3600
     tataaaatcc cgtgttcaga ctgtagcatg agttacattg gtcagactgg acaacaatta      3660
     ggtagtaggt tgaatggaca caagtataac cggagggagg ttacagcctt gcatcgtcat      3720
     gaggattctc tggatcatca ttttaatttt gacaacgtca cggtgttggc cgtcgaaaaa      3780
     aatgaccacg ccagatgcat attggaaagt attcacattg tgaaaaataa aaacagtgtt      3840
     tgtaatttaa aaactgatac agataagctc tgcgggtcgt atcggcgtat gtttgacgaa      3900
     gatcagtcga ccatttgagt ttcctatcta ttattttgtt ggtctgttat tcgctttgtg      3960
     tatttgcttt gttacctcgt tgcattcttt agccaactga ggagggagtc gtttggctcc      4020
     gaaacgtttt ggtttctttc ttgttttaaa ttgtgtttta taattatttt tttagccttg      4080
     tttcccgatt ttagtgttca attttttctt tatatgtatt cgggctattt taggaaaatc      4140
     tttatt                                                                 4146
//
ID   Penelope-14_LMi repbase;    DNA;    INV; 2202 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-14_LMi.
XX
NM   Penelope-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2202
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3420-3420 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(429..1385,1361..1921)
FT                 /product="Penelope-14_LMi_1p"
FT                 /translation="RKTHSPVLRKTNSLIKSSTSIREEDKKGLLKSEAMCP
FT                 RLYGLPKIHKIDVPLRPIVSAINSPTHQVARYLASLLQPYIGKTDSYIKDS
FT                 RHFIEKLEGLTLVPEDIIVSFDIVSLFTMIPVNDVMIYIADIFPRDLTALF
FT                 SHCLTSSQFQWDDEFYEQVDGVAMGNPLGPAIANFYMEKFEQSALEKANQK
FT                 PSRWYRFVDDTFVVWSHGKKALEEFLGYLNSINPKIQFTMETENDNRLSFL
FT                 DVLVIRRTDGKLEHKVFRKLTHTDRYLHKNSNHHPQQKRGVIKSLVDRAKR
FT                 ICTPKHLDDELQHLKQAFKKNGYSRKKEEWLFEKEINRILRPNNSRPKDKE
FT                 TTQRWSNTVSLPFVNKVTDQIGKILRKRNIRPVFKPTKKISQALRSVKDKR
FT                 SPLSASGVYKIPCSCGKVYIGTTKRSVNTRLKEHKSLCRLGKTEKSAVAEH
FT                 CLQSGNHIVKFSETEILSSMTNYYPRLYREAIEIYKHNDNFNRKEETMKLN
FT                 DIWTVALQNR"
XX
SQ   Sequence 2202 BP; 771 A; 431 C; 431 G; 569 T; 0 other;
     tgacgaccac cgtagtcata agcagaaatt caaaataaga acatgtaaac aagttatgat        60
     tgaacattat gttaatttca taaatttgtc tccagatgag atttctgtcc ctctaaaggg       120
     gaaactttgc cataacacct acgagatacc agttgagaga tcatcgcgaa tgtagaggct       180
     ggtatacaaa atctccccaa agaaacggca aacgcaatca gaattgaaac tatagagtat       240
     tgtgccgcag caattcttta caaagtaatt taacgaaagg tgagatgaag gctctcaaag       300
     atttaaatgc agatgaaggg atagtgttct cccagctgat aaagggaacg ctactgtagt       360
     tatgaatact gatgattacc ggaacaaaat tttgaacctt ttaacgtcag gagagtacag       420
     gaaactaaag aaagacccac agccctgtat tgagaaaaac gaattctctg ataaagtctt       480
     ctacttcaat tcgagaagaa gacaaaaaag gcttactgaa atctgaagct atgtgtccaa       540
     gactttacgg cttacccaaa attcataaaa ttgatgtccc tttaaggcca attgtcagtg       600
     ctatcaattc tcctacacat caagtagcaa ggtatctggc atctcttttg caaccgtata       660
     ttgggaaaac tgattcatac attaaagact cacgtcactt cattgaaaaa cttgaaggac       720
     taacattggt tcctgaagat attattgtca gtttcgatat agtatcttta ttcaccatga       780
     ttccagttaa cgacgttatg atttatatag cggatatttt cccaagggac ctgacagctc       840
     tttttagtca ctgccttact tccagccagt tccaatggga cgatgaattt tacgagcaag       900
     tcgacggcgt cgcaatgggt aacccactag gtcctgcaat tgcaaatttt tatatggaga       960
     aatttgaaca atctgctctg gaaaaagcaa atcagaaacc ttctagatgg tatcggtttg      1020
     tcgatgatac atttgtggtt tggagccatg gtaaaaaagc tttggaagaa ttccttggtt      1080
     atctgaatag tataaatcca aaaatccaat ttaccatgga aacagaaaat gacaacaggt      1140
     tatccttctt ggatgtttta gttatcagac gaaccgacgg aaagttggaa cacaaagttt      1200
     ttaggaaatt gacacatact gacagatatc tgcacaaaaa ttccaatcat cacccacaac      1260
     aaaagagagg tgtgattaaa agtcttgtag acagagccaa aagaatttgc acaccaaaac      1320
     atctggacga tgagctacaa catctgaagc aggcctttaa gaagaatggt tattcgagaa      1380
     agaaataaat agaattttac gaccaaataa cagtaggccg aaggacaagg aaacaacaca      1440
     acgatggagc aatacggttt ctctcccctt tgttaataag gtaacggatc agattgggaa      1500
     gattctacga aaacgtaaca tcagaccggt tttcaaacca acaaagaaga tatcccaagc      1560
     cctcagatct gtaaaagata aacgttctcc tttatcagca agtggggttt ataaaattcc      1620
     atgctcctgt ggtaaagtct acatcggaac aactaagaga agtgtaaaca cacgtctaaa      1680
     ggagcacaaa agtctatgcc gacttggaaa aactgaaaaa tcggctgtgg cggaacactg      1740
     cttacaatcg ggaaatcata tagtaaaatt ctctgagacg gaaattttat cttccatgac      1800
     gaattactat ccaaggttgt atagagaagc gattgaaata tataaacata atgataattt      1860
     caatcgaaaa gaagagacta tgaaactcaa cgatatatgg actgtggctc tgcagaatcg      1920
     atgactgttt ttatctttga catggttcga tagtatagct ttatctttga caaggatcat      1980
     ctctgcttat cacgtggatc ttagccacgc ccctttagac ggtatttaag aagctctcag      2040
     acccccgacc cgtcagtcgg caagactcaa cagacggaca acctccgaag aagtccgacg      2100
     cagcatcgga cgaaacgtca ggaagcagca agattccaag aacacggcct tacaacccag      2160
     aagatataat acctacaatg tcaacggtcg tgaaagcctt ca                         2202
//
ID   Penelope-15N1_LMi repbase;    DNA;    INV; 1964 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-15N1_LMi.
XX
NM   Penelope-15N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1964
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3421-3421 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1964 BP; 558 A; 436 C; 446 G; 524 T; 0 other;
     gcatcttcat gttttcgcgg cgcaatgact gttcaaagaa gtttcgggcg tgcagccgca        60
     taaagtttct tcttctaata tttcggctga gaaacgttca gccatcttca gagacgagtc       120
     gaagactgac gctccagcac acgcttcgtg cttataaacg cgcgggccgc gctactgcgc       180
     atgcggccac agatacaagg cgccaaagac gttactcggc ggcaaggaag tacttgtgta       240
     aattatgtct gtggctgcat gtcgattagg gagaaatcga tgtttatgat ctgtgctgtg       300
     gcgggtcttt gtaaatttat taaagaaagt gccgattcca gatttatcaa ccgaactatt       360
     gcttccacga gtcccagaaa ggtgtcttcc tatagtgact atgattgtgc caaacattta       420
     gcgtcgtatt aaggccattg gtgggaaaat gtgctcatca catacgtaac ccgctgactc       480
     atgcaaacta aaattgtcgt tttgatgtag tgtccttatt taccaaggtt cctctttcag       540
     actcattatc ttattgcaag aactttgaca agagatttca gcttttttaa acatgtcatg       600
     acctcgacat attttttatt caataacgag ttctttgaac aaactgacgg tgtcgccatg       660
     ggtagtccct tgtccccttt ggtggccaat atgtttatgg aggacttcga ggaaaaggtg       720
     ctggaatctg ccagattgaa gcccacagtg ttctggaggt atgttgatga cacatttgtt       780
     gtgtggcctc acggtgaaga taagttacaa gaatttttaa accacctgaa ttccatccat       840
     aaccaaatcc agtttacaat ggaagtcgaa aaagagggat gccttccatt tctggatgta       900
     atggtacgac gtaaagacga tggcacctta ggacattcag tatataggaa accgacgcat       960
     actgatttat acttacatgc aaatagctgc catcatccat cccagacgat gagtgttctt      1020
     agaacactgg tccatagagc acacgtcatt gctgatgaga gcagtctgca ggacgagctt      1080
     ctacacctga agagagtctt tgaagcaaac gggtactctc cacaacagat acataaggca      1140
     ctacgtacga agccaacggt acgtgcaaag aatacagaag atgatgcaaa aagttttaaa      1200
     tctatggctt ttctgccata tgttgggagc ctgtcgtcga aaatcggacg gattatgaac      1260
     aaacacgatg ttaaagtaat ttttcgaccc ccaccaaaga cagcagcact tttgggttct      1320
     atcaaggatg atttggagct ccggaaggcc ggggtttaca agatcccatg tgaatgtggc      1380
     ctttcgtaca taggacagac gacacgtaca gtccaggaaa gatgcacgga acaccagaga      1440
     tatacccgtc ttttacaacc aaataaatcg gcagtggcag agcactgtat tgatactgga      1500
     cactccatga cgtacgaaaa cgtcaaaatt ttagcctcca cttcatcttt ctgggactca      1560
     gtggtgaaag aagcaataga aattcgcttg gggacgaatt taattaacag agacagcggc      1620
     ttcagtttag ataaatcatg gaatccggca ctttctttaa taaatttaca aagacgccgc      1680
     cacagcacag atcataatac atcgatttct ccgcagtaat cgaccatgca gccacagaca      1740
     taatttacac atacgtgtac ttccttgccg ccgagtaacg tctttggcgc cttgttgtat      1800
     ctgtggccgc atgcgcagta gcgcggcccg cgcgtttata agcacgaagc gcgtgctgga      1860
     gcgtcagtct tcgactcgtc tctgaagatg gctgaacgtt tctcagccga aatattagaa      1920
     gaagtaaact ttatgcggct gcacgcccga aacttctttg aaca                       1964
//
ID   Penelope-15N2_LMi repbase;    DNA;    INV; 216 BP.
XX
AC   .
XX
DT   17-JUL-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-15N2_LMi.
XX
NM   Penelope-15N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-216
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3422-3422 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 216 BP; 56 A; 49 C; 49 G; 62 T; 0 other;
     tgtgcatctt catgttttcg cggcgcaatg actgttcaaa gaagtttcgg gcgtgcagcc        60
     gcataaagtt tacttcttct aatatttcgg ctgagaaacg ttcagccatc ttcagagacg       120
     agtcgactcg tctctgaaga tggctgaacg tttctcagcc gaaatattag aagaagtaaa       180
     ctttatgcgg ctgcacgccc gaaacttctt tgaaca                                 216
//
ID   Penelope-15_LMi repbase;    DNA;    INV; 2711 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-15_LMi.
XX
NM   Penelope-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2711
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3423-3423 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           287..2638
FT                 /product="Penelope-15_LMi_1p"
FT                 /translation="MNKILRSAGAAIVKERIRFTRRQLDLVSEELYRLHLK
FT                 MXVDLPCHSWYWIDGITWAKADWIHEVSTSRQTAKFGRLETPPQQDTVIRR
FT                 SVVNMTGRDLDDATMXVLGKGLNFAPTPKVLPIPSFISAVEEAVRPLSTDS
FT                 ADEIRRETCRAVMKARPQRSNISVAERDALRKLRQDTETVVLPADKGNATV
FT                 LMTREDYHDKMYSLLTDSTYRKLTKDPTNQVVRKTASLLNASTLPPEVVRR
FT                 LKPSGAVPPRLYGLPKVHKKDVPLRPIVSNIGSPNYDCAKHLASLLRPLVG
FT                 KCAHHIRNSADFIGKLKSLKLDSSDLLVSFDVVSLFTKVPLPDSLSLIGRT
FT                 FDKEISALFKHVMTSTYFLFNNEFFEQTDGVAMGSPLSPLVANLFMEDFEE
FT                 KALESADLKPTVFWRYVDDTFVVWPHGEDNLQDFLRHLNSIHDQIKFTMEI
FT                 EKEGCLPFLDVLVRRRDDGTLGHEVYRKPTHTDLYLRANSCHHPSQTMSVL
FT                 RTLVHRAHIISDESSLQDELSHLQRVFEDNGYSPQQIQKALQMKPKEATKN
FT                 TEEDEETFKSMAFLPYVGSLSSKIGRILSRHKVKVIFRPPPKTAALVGSVK
FT                 DDLLLRKSGVYKIPCECGLSYIGQTTRTVHERCTEHQRYTRLLQPNKSAVA
FT                 EHCIDTGHSMLYDNVEILATTSSFWDSVVKEAIEIRLTTNLINRDSGFNLD
FT                 KSWNPALSVINSQRRRHSAAHSDTSTCQHRGAIDSTRALCTSLPPTNVSGA
FT                 YVSVAACAVARYASIKGRSERWSVSLSAHSEDG"
XX
SQ   Sequence 2711 BP; 775 A; 607 C; 628 G; 699 T; 2 other;
     tgaagatggt gaacggttcc agccgaatat tagatgaagt acagaataat gaaaaataca        60
     gaaaatcctt tatgcggctg ccccaaactt ttgaacagtc ttgcgccgcg aaaactgaag       120
     atgcacatca agtacctctt cggggaggag atggttttaa gtgttcggat tggacaagtt       180
     cgaacttgag agcgagattc tgagctcttt aaccttttta ttgagtgcct gaccatggat       240
     tattccaaag tttgccaggt tagtacattt tataaaatcg acttccatga acaagatttt       300
     aagaagtgct ggtgctgcca ttgttaaaga gaggatccgt tttactcgac gacagttaga       360
     tcttgtttct gaagaacttt atcgtctgca cctgaagatg kctgtggatt taccctgtca       420
     ttcatggtac tggattgatg gtataacgtg ggctaaagca gattggattc acgaggtgtc       480
     tacatcgaga cagactgcaa agtttggccg gcttgagacc cctccgcaac aagatactgt       540
     tattcgacgc tccgttgtta atatgacggg tagagatttg gacgatgcta cgatgwtggt       600
     cttaggtaaa ggactgaact ttgcacccac gccaaaggtt ttaccaatac cttcgtttat       660
     cagcgccgtt gaagaagctg ttcgaccact ctccacggat tcagcagatg aaataagacg       720
     tgaaacctgc cgtgctgtaa tgaaggctcg ccctcaaagg agtaatattt ctgtggcaga       780
     gagggatgca ctacgtaaac ttcgccagga taccgagaca gtagttcttc cagctgacaa       840
     aggaaatgcc actgttttaa tgactcgtga agactaccat gataaaatgt atagtttact       900
     gactgacagc acataccgga agctcaccaa ggaccccaca aatcaggtgg tgaggaagac       960
     tgcatcgctt ctgaacgcct ccaccttgcc tccagaagtt gtgcgaagat taaaaccaag      1020
     tggtgcggtt cctccaagac tttatggact tccaaaggtc cacaagaagg atgtcccatt      1080
     gcgtccgata gtgagcaaca ttggctctcc taactatgac tgtgccaaac atttggcgtc      1140
     gttattgagg ccactggtgg gaaaatgtgc tcatcacata cgcaactccg ctgacttcat      1200
     tggcaaactg aaatctttga aactggacag ctctgacttg ttagtcagtt tcgatgtggt      1260
     gtccttattc accaaggttc cccttccaga ctcattatct cttattggaa gaacttttga      1320
     caaagagatt tcagctttgt ttaaacatgt catgacctcg acatacttct tattcaacaa      1380
     cgaattcttt gaacagactg acggagtcgc catgggtagt cccttatcac ctttggtggc      1440
     caatttgttc atggaggact tcgaggaaaa ggcgctggaa tctgccgact tgaagcccac      1500
     agtattctgg aggtatgttg atgacacctt tgtagtgtgg ccccacggtg aagataactt      1560
     gcaagacttt ttaagacatc tgaactccat ccatgatcaa atcaagttca caatggaaat      1620
     tgaaaaggag ggatgccttc cattcttgga cgttctggtt cggcgcagag acgatggcac      1680
     cttgggacat gaagtttatc ggaagccgac gcacacggat ttgtatttac gtgcaaatag      1740
     ctgccaccat ccttcccaga cgatgagtgt tctcagaact ttggtgcaca gagcacatat      1800
     tatttctgac gaaagcagtc tgcaagatga actttcccac ttacagagag tgtttgaaga      1860
     caacgggtac tctccacagc agatacagaa ggcactgcaa atgaaaccga aagaggccac      1920
     aaagaataca gaagaagacg aagaaacctt taaatccatg gctttcctgc catatgttgg      1980
     tagcctctcg tcaaaaatag gacggattct cagcagacac aaagtgaaag tgatttttcg      2040
     tcctccaccc aagacagctg cactcgtggg ctccgtcaaa gatgatttgc tgctccgaaa      2100
     atctggagtt tacaagattc catgtgaatg tggcctttct tacatcggac aaacaactcg      2160
     tactgtccat gaaagatgta cggaacacca aaggtacaca cgacttttac aacctaacaa      2220
     gtcggcagtg gcagagcact gcattgacac tggtcacagt atgttgtatg acaacgtcga      2280
     aattttggca actacatcat ctttctggga ctcagtagtg aaggaggcaa ttgaaattcg      2340
     cttgacgacg aatttaatta acagagatag tggtttcaat ctagataaat catggaatcc      2400
     ggcactttct gtaataaact cacaaagacg tcgtcacagc gcagctcata gtgatacatc      2460
     gacatgccaa caccgcggag ccatagattc aactcgtgca ttatgcacgt ctttgccgcc      2520
     gaccaacgtc tctggcgcat atgtatctgt ggccgcatgc gcagtcgcgc ggtacgcgag      2580
     tataaagggc cgaagcgagc gctggagcgt cagtctttcg gctcactctg aagatggctg      2640
     aacgttacac agccgaaata ttaagaagaa ggagaattct tgcggctgca cacccgaaac      2700
     ttaatggaac a                                                           2711
//
ID   Penelope-16_LMi repbase;    DNA;    INV; 2867 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-16_LMi.
XX
NM   Penelope-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2867
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3424-3424 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(366..2150,2128..2751)
FT                 /product="Penelope-16_LMi_1p"
FT                 /translation="EAIRRDHSNVLSKGLNFAVTPRNIPVAAFVSAVEQVA
FT                 VRLPPCEAEEVRRDTCRALTKTKLPKSNITSEERLALRQLREDESIVVLPA
FT                 DKGNATVILQKADYDSKIRQLLDDPAYRLIERDPTDKVDRKTRALLKETDI
FT                 PEKVVKQLRPKAPVPPRLYGLPKVHKEMIPLRPIVSNIGAATYPLAQHLKK
FT                 MLSPYVGKCAHHIRNSEDFLHRLKQQHITESDIMVSFDVVSLFTKVPLNES
FT                 LELIGKKFDGALLDLFRHVLTSTYFLYGGQFYEQTEGVAMGSPLSPVVANL
FT                 FMEKFEDDALASAPDQPKCFYRYVDDTFVIWPHGKEKLLGFLDHLNSRHPN
FT                 IKFTMEMEKNGQLSFLDVLVQRKADGTFGHSIYRKPTHTDLYLQASSCHHP
FT                 AQKIGVLKTLVHRARSLSDPDNLTKELEHLQSVFYRNGYSSRDIEKALRPV
FT                 SPPEETAEVQEETKTVAFLPYAGPISAKISRILLKYNVKSVFCPPPKIKAL
FT                 LRSVKDDLGLQKPGIYHIPCQCGMSYIGQTTRTVDIRCKEHQRHTRLKQAS
FT                 KSAIAEHCLELNHLMNYDDVKILAQTPRYWDSVIKESIEIKVAESYQPRSQ
FT                 NLINRDTGYQLSSAWNPALDLLKTQRRQQPTCGSNNSAYDRMNKSAQITQA
FT                 EQMVLNQTTNQAPEDGHIENKRHFQHQEPESDAAGAASGRGPHREHLTRPA
FT                 TVTEQYSAQESLNDGNQQIERPVQLGGGTERNMTKLLTDKSQKARTQQAEQ
FT                 PHLVNASIAASGRRGRRMERLPQRRPMAERLATADRHKYWTRSTLDSASGS
FT                 T"
XX
SQ   Sequence 2867 BP; 870 A; 714 C; 693 G; 589 T; 1 other;
     cgaaaaggag gaatgctkag ttctctcggt ttcctgctga gatgcagaga gaggatgtta        60
     ttcagtgttt gccagattca aacatcagca gccaacagga tcaaacaccg ggcgagccaa       120
     gcattaagag agaggatacg tgatatgcgt caccgcttag atgtggtgtc cagggaacta       180
     ctacctctac acctgtctgt tgccacagcc ttaagcagag aagactggga cctagtggat       240
     ggtacttcat ggtctctagc ggaatgcctg aaaaaaaatc agcggcacgt caactctcca       300
     agtttgaccg tctcaacaac aaggtgaggc agactgagaa tattcgaacg ttgttaactc       360
     agtgagaagc aattcgacga gaccacagta atgttcttag caagggtctt aacttcgctg       420
     tgacccccag aaatattcct gtcgctgcct tcgtcagtgc agtggagcaa gtggctgtca       480
     gactacctcc atgtgaagct gaagaagtcc gacgagatac gtgcagagcg ctcaccaaga       540
     cgaagctgcc taaatctaac atcacaagtg aggagaggct ggctctgaga cagctccgag       600
     aagatgaaag cattgtggta ttaccagcag ataaaggaaa tgctaccgtc atcctacaga       660
     aggcagacta cgacagtaaa attcgacaac ttctggatga ccctgcatac agactgatag       720
     aaagggatcc cactgacaag gtggacagga agaccagggc ccttctaaag gaaaccgaca       780
     taccggagaa agtcgtgaag cagctgaggc cgaaagctcc agtaccacct aggctttatg       840
     gactgccgaa ggtgcacaag gagatgatcc ctttgcgccc gatagtcagc aacatagggg       900
     ctgccaccta cccccttgct cagcacctga agaagatgct ctcgccatat gtcggcaaat       960
     gtgcacatca catccgcaac tccgaagatt tcttacatcg tctgaagcag cagcacatca      1020
     cagagtccga cattatggtt agtttcgacg tagtttcctt gttcaccaag gtgccactaa      1080
     atgaatctct ggagctgatt ggaaaaaagt tcgatggtgc tctcctggac ttgttcaggc      1140
     acgtgttaac ctcgacttac ttcctttatg gaggtcaatt ctacgaacaa acagaagggg      1200
     tggctatggg cagcccactc tcaccggtag tggcgaacct cttcatggaa aaatttgagg      1260
     acgatgcact ggcttcagcc ccagatcaac ccaagtgctt ttacagatac gtggatgata      1320
     cctttgtgat ctggccccac ggtaaggaga agctcctggg ctttttagac catctaaact      1380
     ctcgccaccc aaacataaaa tttactatgg aaatggaaaa gaatggacaa ctctcattct      1440
     tagatgttct tgtccagagg aaggcagatg gcactttcgg tcatagtatt tacaggaaac      1500
     caactcacac cgatctgtac ctgcaagcca gtagctgcca ccacccagcg caaaagattg      1560
     gggtactcaa aactctggtt catcgggcac gcagtctctc ggacccagac aacctgacaa      1620
     aggagctgga acaccttcag tctgtcttct acaggaatgg ttattcatcc agagacatcg      1680
     agaaggcgct gcgccctgtt tctccgccag aggagacagc agaagtacaa gaagaaacga      1740
     agacggttgc ctttttgcca tatgccggac caatatctgc gaaaatcagc agaatacttc      1800
     tcaagtataa tgttaaaagc gtattctgcc caccacccaa gattaaggct ctcttacgaa      1860
     gtgtaaagga tgatctgggc ctacagaagc cgggaatcta ccacatacca tgccagtgtg      1920
     gtatgtcata cattggccag acaaccagga ccgtcgacat caggtgtaag gagcaccaac      1980
     gacacaccag actcaaacaa gcttccaagt cagctatagc ggagcactgt ttggaattaa      2040
     atcatttgat gaattacgat gatgtcaaga ttctggcaca aactcccaga tactgggata      2100
     gtgttatcaa agaatccatt gaaataaagg tcgcagaatc ttatcaaccg tgacacagga      2160
     tatcagctta gttccgcctg gaatccagca cttgatctcc taaagacgca acggaggcaa      2220
     cagcccacct gtgggagcaa taattctgca tatgacagaa tgaataagtc agcacaaata      2280
     acacaggctg aacaaatggt gctgaatcag acaacaaatc aagcaccaga agacggtcac      2340
     atagagaata aacggcattt ccaacaccag gagccagaga gcgatgcggc aggcgctgct      2400
     agcgggcgcg gacctcatag ggagcacttg acccggccgg ctacggtaac agaacagtat      2460
     agtgcacaag aaagcttaaa tgacggcaat cagcagattg aacgcccagt acaacttgga      2520
     ggtggaacag aacgtaacat gacgaaatta ttaactgaca agagccaaaa agcacgcact      2580
     cagcaggcgg aacagccaca cctagtaaat gctagtattg cggctagtgg ccggcgcgga      2640
     cgtcggatgg agcgcctccc acagcgccga ccaatggcag aacgcctagc caccgcagac      2700
     aggcataaat actggacgcg ttccacactg gattcagctt caggaagcac ctgatgaaga      2760
     tcgcgagtaa cgcgatcgaa atatcgtgct agtacgacgc ggattaccgg cagaaacccg      2820
     attctccaag atgacaacac cccgccggga aagccttaat atgtaca                    2867
//
ID   Penelope-17_LMi repbase;    DNA;    INV; 2770 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-17_LMi.
XX
NM   Penelope-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2770
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3425-3425 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(246..1502,1463..2146,1927..2547)
FT                 /product="Penelope-17_LMi_1p"
FT                 /translation="QLRRKVASALAFLLRCRNEGIIPKFARIVHFINSAVA
FT                 NNIKRRASFALVRERIHFTRRQLDVISKDLFYQHLEISSSLSGISWDRVDC
FT                 STWAISDWAHRSAVTKQSSKFQRLCTQSTTSDDTFKRIVINLTSKDLDDAT
FT                 VSVLKKGLNFAPTPKTLPVTEFICSVEQAVSRLPDDRADEIRQEVSAVLHK
FT                 SPPPHSNISSVERAAIRSLRQDSXLVILPADKGNATVLLTRHDYVDKMDRL
FT                 LQDSAYRKLQNDPTERVKRKTFSLLRNSLLPEEVVKKLRPSAAVPPRLYGL
FT                 PKVHKDGVPLRPIVSNLGAPTYNLAKYLASVLSPHVGNCEHHIPNSLVFTQ
FT                 RLKSLCVGPSDMLVSFDVVSLFTRVPLEESLELIGDKLDAEMTKLCRHVLT
FT                 STYFLFNDQYFEQMTEWLWGVXYPPADDGVAMGSPLSPIVANLFMEDFEDR
FT                 ALRTARLKPTCFWRYVDDTFMVWPHGPDALNRFLDHFNCLHPNIKFTMEVE
FT                 RDGKLPFLDVLVYRKDDGTLGHSVYRKPSHTDRYLHAMSCHPPNQRTGVLR
FT                 TLVRRAYAISDADTLTQELEHLKLVFKENGYTERQIRRAMQIGPSPEPEED
FT                 QCRSVAFLPYAGSVSSKIGRILKSLTSKVCFDHLPRLGLFLAQLKTIWGGE
FT                 WVHRETDPSCHADWAITRTRRGPMQISCFPSIRRKCVFKNRKDLKKFNIKS
FT                 VFRPPAKTRALLGSVKDDLGLRKPGVYKIPCHCGKAYIGQTIRTVNDRCAE
FT                 HHRHTRLLQPDKSAVAEHCLTEGHRMKYDETRVLASASRYWECVLKESIEI
FT                 RLADDLINRDKGFPLSNMWNPVLSNLKNSALFSPPVTTSACKRYIVPASFL
FT                 H"
XX
SQ   Sequence 2770 BP; 742 A; 637 C; 663 G; 726 T; 2 other;
     cagaggacca gccacgactt ctggccaagt gccgttagta cttgggctat ataaggcccc        60
     gacggcaaga cttcagtttc ctagagactc agcagcacat atacctgaaa atggtggcag       120
     gtggtccgag gaatattgtg tcagatgact cacatccgct ggaaacccga catggacatc       180
     aacaatttat cacatcacat caagttcctc tacggggagg aggggtgcac ttgtctcaag       240
     tttgacaact tcgtaggaaa gttgctagtg ccctcgcttt cctgctgaga tgccgtaatg       300
     aaggtattat accaaaattt gctagaattg tacattttat caatagtgca gtggctaata       360
     acatcaagag acgtgctagt tttgcattag ttagagaacg tattcatttt actagaagac       420
     aactggatgt catatccaaa gatttatttt atcagcattt ggagatctcg tcttcactgt       480
     cgggaatatc ttgggatcgg gttgattgtt ccacctgggc aatatcggac tgggcgcaca       540
     ggagcgccgt cacaaagcaa tcctccaagt ttcaacgtct gtgtactcaa tccacgacat       600
     cggacgacac cttcaagcgt atcgtgatta acctcacgag taaagatttg gacgacgcca       660
     ctgtgtctgt gttgaagaaa ggcttaaatt ttgctcccac accgaagaca cttcctgtga       720
     ctgaatttat ctgttctgtg gagcaagcgg tgtctcgtct tcctgatgat agagccgatg       780
     aaatcagaca ggaagtttca gctgtattac ataagtctcc gccaccacac agtaacattt       840
     cttctgttga gagggcggct atccgatccc ttaggcaaga ttcggakttg gtcatcttac       900
     cagcggacaa gggcaatgcc acagttcttc ttactcgtca cgactatgta gacaaaatgg       960
     atcgtctact tcaagactct gcgtaccgca aattgcaaaa tgaccccaca gagcgagtaa      1020
     aacggaagac tttttcgctt ttgagaaata gtttgttacc tgaggaggtg gtcaaaaaac      1080
     ttcgccctag tgctgcggtt cctccgagac tatacggcct accgaaggtc cacaaagatg      1140
     gggtgccatt acgtcctata gtgagtaact tgggtgcacc gacttataac ttggcgaagt      1200
     atttagcatc ggtccttagt cctcacgttg gaaactgcga acaccatatc cccaactctt      1260
     tggtgtttac tcaacgtctg aaatctttgt gtgttggtcc atctgatatg cttgtcagct      1320
     tcgacgttgt atctctgttt acacgggtcc ctcttgaaga gtctttggag ttaattggtg      1380
     acaaactgga cgcagaaatg actaagcttt gtcgtcatgt gctgacctct acatattttt      1440
     tatttaatga ccagtacttt gagcagatga cggagtggct atggggagtc cwttatcccc      1500
     catagtcgcc aatttattta tggaggactt tgaagacagg gcactgagga cagctcgtct      1560
     gaaacctacc tgtttctgga gatacgtgga tgacacgttc atggtgtggc ctcatggacc      1620
     ggatgctctt aatcggttcc tggatcattt taattgcctc caccccaaca tcaaatttac      1680
     gatggaagtg gagagggatg ggaagcttcc atttttggat gtattagtgt acaggaagga      1740
     cgatggaacc ctaggacata gtgtgtacag aaaaccctcg cacacggacc gatatctaca      1800
     tgcaatgagt tgccacccac cgaaccaacg cacaggtgtc ctgagaactt tggttagaag      1860
     agcttatgcc atatcggatg cagatacctt aacacaggaa ctagaacatc tgaagttggt      1920
     gtttaaggag aatgggtaca cagagagaca gatccgtcgt gccatgcaga ttgggccatc      1980
     accagaacca gaagaggacc aatgcagatc agttgctttc cttccatacg ccggaagtgt      2040
     gtcttcaaaa ataggaagga tcttaaaaag tttaacatca aaagtgtgtt tcgaccacct      2100
     gccaagacta gggctcttct tggctcagtt aaagacgatt tggggctgag aaagcccggt      2160
     gtttataaga ttccttgcca ctgtgggaaa gcatatatcg gacaaacgat tcgcaccgtt      2220
     aatgatcgat gcgccgagca ccacagacat acacgtttgt tgcaacctga caagtctgca      2280
     gtagcggagc attgtctaac cgaaggacac agaatgaagt atgacgaaac acgtgtactt      2340
     gcttctgcgt ctcgctattg ggaatgcgtt ttaaaggaat cgattgagat taggttggcg      2400
     gacgatttaa taaatcgaga caagggtttc cctctaagta acatgtggaa tccggttttg      2460
     tctaatttaa aaaacagcgc actcttttct ccacctgtga caactagcgc atgtaagcga      2520
     tacatcgttc ctgccagttt tctccactga ggcgctgcac cggctgcttg cggcagagga      2580
     cgcagccacg actctctggc gcacgcgccg ttagtacttc gcggcgtata taaggccgcc      2640
     gatcacggca agacttcagt ttccacgaga ctcagcagca tcctcacctg aagatggcgg      2700
     ccaggtggtc cgcagaaata ttgtgtcaag atgactctac gatccggctg gaaacccgac      2760
     atgaatatca                                                             2770
//
ID   Penelope-18_LMi repbase;    DNA;    INV; 2231 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-18_LMi.
XX
NM   Penelope-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2231
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3426-3426 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           394..2025
FT                 /product="Penelope-18_LMi_1p"
FT                 /translation="RKCNRRIEECKIKDILDPANYKKLQKDPTTKILKTTN
FT                 QLVKASSFSSDDKKLLCKTEAYPPRLYGLPKVHKEQTPLRPIVSAIGSPTH
FT                 ELARHLASLLQPYVGKTDSHIKNSAHFIEKLKEMNVAHSDILVSFDVVSLF
FT                 TMIPVNEAISCIADIFPPDIVSLFRHCLTTTYFQYNNEFYEQIDGVAMGSP
FT                 LSPAVANLFMESFEQQALQTANKKPARWYRYVDDTFVLWTHGAEELDAFLT
FT                 HLNGINPRIQFTMETESNGQLNFLDVSVIKHVDGTLGHKVYRKATHTDRYL
FT                 HKDSNHHPRQKRGVVKTLVDRAHKICEPTYLKDEMEHLRSTFQKNGYSTKE
FT                 IDRALRPREKVNVNKEQQPPKGKVFLPFINKVTDRIGKVLDKYGVETIFRP
FT                 TRKIKEYLRSAKDVRHPLNTPGVYKIPCSCGSVYIGTTKRSVNTRLVEHKR
FT                 NCRLGHTEKSAVAEHVYQEGNHEIKFNETSVISKTSHYHARTYREAIEIYK
FT                 HRNNFNRKEEAVKLDRIWTSALHQRNDNRFFSAKNVGNTRDSVVADVT"
XX
SQ   Sequence 2231 BP; 725 A; 463 C; 485 G; 558 T; 0 other;
     ttagaatttg aaataatgac aatcaacttc agaaccatgg aacgtagtgc agagatttgt        60
     cagacagaag aagaaatttt cttgtcttca gaagaatatg tgtgttgatc agttgacata       120
     attcccgcac tgttatcaat cgaaaatagt tgaatttcgt acagccaaag ggggcaattt       180
     tgcagtgact ccacaaaaag tacccacgga agatatatca aatattgagg caggcatggc       240
     tacttccaca acagtctgct gatgtaatta gaatggaaac agccagaatt ttgcgtaaat       300
     gtaaaccacc aaaaagtaat ttgtctcacg aacaaagaag gcgctgagcg atattaacgc       360
     agataccaac atcattgttc tcaccgcaga taaaggaaat gcaaccgtcg tattgaggag       420
     tgcaagatta aggatatttt ggacccagcc aactataaaa aactgcagaa ggatccaact       480
     acgaagattt taaagacgac taatcaactg gtgaaagcat cttccttctc ttctgacgac       540
     aagaagttgc tctgcaaaac ggaagcgtat ccaccaaggc tctatggact cccaaaggtg       600
     cataaagaac agactccgct taggccaatt gtgagtgcca ttgggtcacc cactcacgag       660
     ttagctagac atctggcctc gttgttgcaa ccctatgttg gaaaaactga cagccatata       720
     aaaaattcgg ctcatttcat tgaaaaacta aaagagatga atgttgccca tagtgatatt       780
     cttgttagct ttgacgtggt gtctctgttt acgatgattc cagtgaacga agctatctca       840
     tgcatagcgg atatttttcc acctgacata gtatcattgt ttagacactg cctcaccact       900
     acctattttc agtacaataa cgagttctat gaacagattg acggagtggc tatgggcagt       960
     ccactgagtc cagcggtggc caatctattt atggagtcgt tcgaacaaca ggcgttgcag      1020
     actgctaata aaaagccagc taggtggtat cgatatgtcg atgacacttt tgtgctatgg      1080
     acacacggtg cagaggaatt agatgccttc ttaacgcatc tcaatggtat caaccccaga      1140
     atacaattta cgatggaaac agagagcaac gggcagctga attttctcga tgtgtctgta      1200
     atcaagcacg tggacgggac gttgggccac aaggtctaca ggaaggctac tcatactgat      1260
     cgttacctgc ataaagactc taaccaccat cccagacaaa aaagaggtgt ggttaaaaca      1320
     ttggttgaca gggcgcataa aatttgtgaa cctacttatt taaaagatga gatggagcat      1380
     ttacgatcca ccttccagaa gaacggctat tctaccaaag aaatagacag agcccttcgt      1440
     cccagggaga aagtcaacgt caacaaggaa caacaaccgc ccaaggggaa agtttttctt      1500
     ccgttcataa ataaggttac agaccgtatt ggaaaagtgc tggacaagta tggggtagaa      1560
     accattttca gacctacgag gaagataaaa gaatatttaa gatctgcaaa agatgtacga      1620
     catccgttga atacaccagg tgtatataaa attccctgca gctgtggttc agtctacatt      1680
     ggaactacaa aaagaagcgt caatactcgt ctggtcgaac ataaaaggaa ttgccgcttg      1740
     gggcacacgg agaaatcggc cgtagcggaa catgtatacc aagaaggcaa ccatgaaatt      1800
     aaatttaatg agactagtgt catctcaaaa acttcgcact atcatgcgcg cacatataga      1860
     gaagcaatcg agatatataa acatcgcaat aattttaaca ggaaagagga agctgttaaa      1920
     ttagacagaa tttggacttc tgctttacac cagcggaatg acaatcgatt cttctctgcc      1980
     aagaatgttg gcaataccag agatagtgtc gtagccgacg tcacgtgatg tcttgtggtg      2040
     ccctctacat tgcctatata tacggcgctc cctcaagttc tcatcgcagt tcgccactct      2100
     acctctgaag atgtcttccg cagccgaaga tgaaacgtta ggggaaagtt ttataaatcg      2160
     accacggctt atgagcccgg aagttttaaa tgaagttgac gccggccgtg aaagtttaca      2220
     ttgtatgatc a                                                           2231
//
ID   Penelope-19_LMi repbase;    DNA;    INV; 2146 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-19_LMi.
XX
NM   Penelope-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2146
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3427-3427 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..1244,1214..1759)
FT                 /product="Penelope-19_LMi_1p"
FT                 /translation="VLKKGLNFAPTPKSTPIADIISSVEQVAARLSPEAAE
FT                 EIRRETCRALTQTKPMKPNISKRERAAIRKLREDPEIVVLPADKGNATVVL
FT                 SHVDYIEKMRALLEDNAYQKIDTDPTKRVERKTTALLKESDLPDDVIKKLR
FT                 QRASVPPRLYGLPKVHKDGVPLRPIVSNIGAPTYSLAKYLKDLLSPYVGKC
FT                 SHHIRNSVDFVERLNNFKLKDTDILVSFDVVSLFTRVPLQGSLELIGQKFD
FT                 EKTTNLFKHVLTSTYFLFDGGYYEQTEGVAMGSPLSPVVANMYMEHFEEEA
FT                 LESAQWKPTCFFRYVDDTFVIWPHGRDKLNDFLTHLNSIHQNIKFTMEVEV
FT                 DGVLPFLDVLVKRRADGTLGHSVYRKKTHTDLYLQADSCHHPAQRNGVLKT
FT                 LVHRARTLSDDGVSTKKLNIRWSINEEIEHLKAVFRKNGYKEWQIRRALRP
FT                 TPPAQPAEPEEDAQEDAAIAFIPFCGALSGKIGRILRKHRVKTVFHPPAKT
FT                 RALLGSVKDDLGLRKSGVYQIPCQCGATYIGQTVRTVEDRCREHQRHTRLQ
FT                 QPSKSAVAEHCLTEIHGMDYDRTKVLTQTSNFWDCVIKESVEIRVREPR"
XX
SQ   Sequence 2146 BP; 604 A; 534 C; 559 G; 449 T; 0 other;
     cagttcttaa gaaaggactc aattttgcac ccactcctaa atcaacacct atcgcggaca        60
     tcatcagctc agtggaacag gtagctgccc gactttcccc tgaagcagct gaagaaatac       120
     gtcgtgaaac ctgtcgtgct ctcacgcaga cgaagcctat gaaacctaac atctctaaaa       180
     gggagagggc agccataagg aaactaagag aagatcctga aattgtggtc ttaccagctg       240
     acaagggcaa cgcaactgtg gtcctatctc acgtggatta cattgagaaa atgcgggccc       300
     tgctagagga caatgcatac cagaagattg acactgaccc taccaagagg gtggagagga       360
     agaccacggc gcttctcaaa gaatccgatt tgccagacga tgttattaag aagctaagac       420
     agagagcatc agttccacca agactttatg gactaccgaa ggtccacaag gatggggtcc       480
     ctttacgccc cattgtcagc aacattggtg ctccgacata ctcacttgct aagtacctta       540
     aggatttgct tagcccttac gtcgggaagt gctcccatca cattcgcaac tctgtggatt       600
     ttgtggagcg ccttaacaac ttcaagctca aagatactga catccttgtc agcttcgatg       660
     ttgtgtctct ttttaccaga gtgcctttac agggatcctt agagcttatt ggccagaaat       720
     ttgacgaaaa gacaaccaac cttttcaagc atgtcttgac gtcgacatac tttctcttcg       780
     acggtggcta ctatgagcag acggaagggg tagccatggg gagtccactt tcaccagttg       840
     tcgccaatat gtatatggaa cacttcgagg aagaagccct ggaatcagcc cagtggaaac       900
     ctacctgttt cttccggtat gtagacgaca ctttcgtgat atggccacat ggaagagaca       960
     agctgaatga cttccttacg cacctcaatt ccatacacca gaacatcaag tttactatgg      1020
     aagtcgaggt ggatggagtg ctcccctttc tggatgtcct ggttaaaaga agggctgacg      1080
     gcactttggg ccacagcgtg taccggaaga agacgcacac cgacctatac ttgcaggcgg      1140
     acagctgcca ccacccagct cagaggaacg gcgtgctcaa aacattggta catagggctc      1200
     gcactctctc tgacgatgga gtatcaacga agaaattgaa catctgaaag cggttttccg      1260
     gaagaatggc tacaaagagt ggcaaattcg gagagcctta cgtcctacac cccctgcaca      1320
     accggcggaa ccagaagagg acgctcagga ggacgcagcc attgcgttta ttcctttctg      1380
     tggcgcgtta tccgggaaaa taggacgaat tctcaggaag caccgagtga agacagtctt      1440
     ccacccacca gctaagacac gagcactgct tggaagtgtg aaagacgacc tgggactgcg      1500
     gaagtccggt gtctatcaga tcccctgcca atgtggtgca acatatatag gtcagacagt      1560
     gcgtactgtc gaggatcggt gccgagaaca ccaacggcac acaagattac agcaacctag      1620
     caagtcggca gtcgcagaac attgcctgac ggaaatacac ggaatggatt acgaccgcac      1680
     caaggttctg acacaaacgt ccaacttctg ggactgtgtc atcaaggaat ctgttgagat      1740
     acgtgtaagg gaaccgcgat aaatcgtgat agcgggtaca tacttagcaa ggcatgggat      1800
     cccgctatta gattggtgaa gaagaggaag agatatctga caaagaactg acttcggggc      1860
     aggtggagga acagcagaag agccgccagc acgcgcacct gggcgcggac ccgggctgaa      1920
     cactcggtcg gcgggagaag cgagggcagg gatgctgggc gcggaccgcc gatagagcgg      1980
     gtggcgataa aagcgcgcga ggaccccacc ctcatcagtt catcagcgca cctgatgatg      2040
     gcaacgtggt cgtttgccga aatattgtgc ccgttggaca ctgaaacccg gcagtttacc      2100
     cgcgaattat ttcgatacga agtacgcgga gaattgaaga atcaca                     2146
//
ID   Penelope-1_AAe repbase;    DNA;    INV; 2465 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2465
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1435-1435 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >96%
CC   identity.
CC   Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2030
FT                 /product="Penelope-1_AAe_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MGSRFALPYTNMNELPIYHLIADVENIIQTNSTTEVQ
FT                 ERNRLPTKSKIFSTXKEERASMIRQPTSTGVPSKQRTFLKEHPDLVVIEAD
FT                 KGNXTVVMKREEYECKMQRMIDDDDTYRKLNRDPTTTYQRRNNNFAKRLAD
FT                 LKLIDRATEMRLKTYKATAPRIYGAPKAHKEGLPLRPVVPCMTSPAYTLSQ
FT                 YVGKIIQKSITGKYNATDSFTFCEYINNVELPPDYVLISLDVVSLFTCIPK
FT                 DLVLRDIINNWHSIKQHTNINLDLFLEMTEFCIDCSYFRFKGQFYQQVFGT
FT                 AMGNPLSPIIADLVMETLLDNVVARVSFPMPVLKKYVDDLILAVPKDKVEE
FT                 VRRMFNEYHDRIQFTVEEENDRKIPFLDLLLVRQTDQTVKTEWYMKPIASG
FT                 RFLNYHSAHSFKLKVNVATNFIHRVKTFSTNIDPNTARGIIRSQLKLNDYP
FT                 PTIINRLIDRSRERRVNTTTNDDVTTPETTVYRSMVHIGQLSGKIQKFLKK
FT                 DYPNVTISSKNAKAVGNILPPVKDVEDKINKSNVIYSIPCADCPACYVGMT
FT                 TNKLQTRIASHRSCSNKLQSMWEEGKTTEDLEVAQLRERTALLDHSAASHH
FT                 TFAFDRTQIVDSSFKKQNLHILETCHIINTHNTVNKRTDTDNLSNTYAGVL
FT                 HTLKCSXANRQTRHTTQTESTQQESTQ"
XX
SQ   Sequence 2465 BP; 821 A; 599 C; 516 G; 518 T; 11 other;
     gtatggggtc aagatttgcg ttaccataca cgaatatgaa cgaacttccg atctaccact        60
     tgatagcgga cgtggagaac atcatccaaa caaacagcac aaccgaagtc caggaacgca       120
     acaggttgcc aaccaaatcc aaaattttct ccacgcsgaa agaggaaagg gcaagcatga       180
     tccgacaacc aacttctacc ggagtaccat caaagcaacg aacgtttttg aaggaacacc       240
     cggatctagt ggttatagaa gcggataaag gaaacckaac ggtggtgatg aaacgggagg       300
     aatacgagtg caaaatgcaa cgcatgatcg acgatgacga cacgtaccgg aagctcaacc       360
     gggacccaac aacaacgtat caaagacgca acaacaattt cgccaaacgc ttggcggatt       420
     tgaagctcat cgatcgtgcc accgaaatga gattaaaaac ctacaaagcg acagcaccgc       480
     gaatatatgg tgccccgaaa gcacacaagg agggcctacc attgagacca gtggtaccgt       540
     gtatgacgtc accggcatac acactgtcgc aatacgtggg taagataatc caaaaatcca       600
     tcacagggaa gtacaacgcg acggattcgt tcacgttttg tgaatacata aacaacgtcg       660
     aactaccgcc ggactacgtt cttatttccc tggacgtagt gtcgctgttc acttgtattc       720
     ccaaggactt ggttctccgt gacatcatca acaactggca ctctattaag caacacacca       780
     acatcaacct ggacctgttt ctggagatga ccgaattctg cattgactgc agctatttcc       840
     ggttcaaagg acagttctac cagcaagtgt ttggtacagc gatggggaac cccttgtctc       900
     ccataatcgc ggatctagta atggaaacgt tactagacaa cgttgtcgcg agagtcagtt       960
     ttccgatgcc tgtgctgaag aagtatgtag acgacttgat cttggcggtg cccaaggaca      1020
     aagttgaaga ggtgagaaga atgttcaatg aataccacga cagaatccag tttactgtag      1080
     aagaggaaaa cgaccggaaa attccgttcc tagacttgct tttggttcga caaaccgacc      1140
     aaacagttaa gactgaatgg tacatgaagc caatcgcctc aggaaggttt ctgaactacc      1200
     attccgcaca cagtttcaaa ctgaaagtaa acgtggcgac caacttcatt catcgagtca      1260
     aaaccttctc caccaacatt gacccgaaca cagcacgtgg catcattcgc tcccaactaa      1320
     aattgaacga ttatcccccc acaatcatca accgcctcat cgatcgatcg agagaacgac      1380
     gggtcaacac caccacaaac gatgacgtca cgaccccaga aacaaccgtt tatcgatcaa      1440
     tggtacatat cggacaatta tcgggaaaaa ttcaaaaatt cctgaaaaag gattatccga      1500
     atgttaccat tagttcgaaa aatgctaaag cggtaggaaa cattttaccg ccggtaaaag      1560
     atgtggagga taaaatcaac aagtcaaacg tcatctacag catcccatgc gcagactgcc      1620
     cagcgtgtta cgtaggtatg acgacaaaca agctgcaaac gaggatcgcc agtcaccgct      1680
     cctgttccaa caagctacaa agcatgtggg aagaaggcaa gacgacggag gacctggagg      1740
     tagcacaact tcgagaacga acagcgctgc tagatcactc cgctgccagc catcatactt      1800
     ttgcgttcga tcgcacacaa atagtggatt ctagttttaa gaaacagaat ttacacatac      1860
     tggaaacatg ccatattata aacacacaca acacagtcaa caagcgcact gatacagaca      1920
     atttgagcaa cacatatgcc ggcgtattgc acacacttaa gtgtagtgaw gccaatagac      1980
     agacaagaca cacgacacaa acagaatcaa cacagcaaga gtccacacaa taagaataaa      2040
     agtggcgata aacaggcaac tktatcgwag ttctgcgacc cggatcgttt ttcggattct      2100
     acgcccgtgt taagaccaga acgggcaaag taagtaaccg agacgataaa agtgctccag      2160
     cactccctgc tcgcctgttm gtttawattt ttatctgact cttgcttgta gattctgtat      2220
     gttgacttat gctgcctatg ctgtgggcaw gttaacgaga aaacggaaca cagttagtaa      2280
     gtkaactcaa cataatcaaa cataaacaca acataaaatg ttcattgtcc acagactcct      2340
     tgaaaaaggc acaataaatg tgtccgaaac gtcggatgaa aacktaaaat ccgtttttga      2400
     gcataataga ctgaaggcca taacctacaa cataatcatc acagtcgtat ccccgagaaa      2460
     gwttc                                                                  2465
//
ID   Penelope-1_AEc repbase;    DNA;    INV; 2710 BP.
XX
AC   .
XX
DT   23-APR-2011 (Rel. 19.03, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Panamanian leafcutter ant
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2710
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 744-744 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           341..2491
FT                 /product="Penelope-1_AEc_1p"
FT                 /translation="CWLLWSHKTFKLHLFLSATLRHDIWQTLDRITYEQAT
FT                 KTHTQSSERQKQKYINLVPHKNPQPSLLNVKNLSNKDLSQDTISALAKGPN
FT                 FAVAPRKIPKEEIISQIESTIYRLPSEQADNIRRQVTNILSKAKPPPPNIT
FT                 RQERLALQDLNRDTDIIVLPADKGNTTVVMNTSDYKKKMKNLLSDKAYKKL
FT                 DKDPTNTIAQNTKILVEKSNIPSKTKSTLKPTNPLPPRLYGLPKVHKPNIP
FT                 LRPIVSAIHSPTYNLSRFLAQTLQPLTGKSESHITNSTDFIQKIQKIRLRP
FT                 TDLLVSFDVESLFTQVPIKDTLNIIKASHEVPSDLIPLIEHCLTTTYFSYN
FT                 NQFYEQTSGAAMGSPISPVIANIFMEHFEKEALRKTPKKPEVWFRYVDDTF
FT                 VIWRHGRAELRKFLIFLNNQHPNIRFTIDIEENGKLPFLDVLVSKKADGTL
FT                 GHQVYRKPTHTDRYLHAESHHHPAQKQSAINSLVHRAFTISDKEHLQTELN
FT                 HLKLALQKNGHDKKDIIKTINKHANKTTVSDTQSDERILSILPYVKGTTDR
FT                 IGRILNKHNIRTIFKPPKKIGQILRNPKDQRPPLSSAGVYKIPCSCGQVYI
FT                 GETGRMVNLRIKEHQRDVRLKHVTQSALSEHNIETGHQILFDKTTTIANIT
FT                 SYFPRKYREAIEIQKHPNNLNRDNGYNINKIWKTILPVIEDRPISPTFPPP
FT                 PPPHNSLLFPPPLQQVA"
XX
SQ   Sequence 2710 BP; 952 A; 727 C; 446 G; 585 T; 0 other;
     taaagattat gcgtttcgcg ggtttcctcc gtgtccagat ccattcttgg aatgccaacg        60
     tttcgtgaac cttgcagtcc acttcatcag ggcgaggagc agcctgatac tgagctgttc       120
     ctccgggtcg ttccttttta tattacgcta cttgttggag tggtgagggg gaaagaagag       180
     aattgtgggg gggagggtgg ggaaatcggt cggtcttcaa taaccgggag aatggtttcc       240
     catattttat ttatgttgta gccattatct ctatttagat tgttagggtg tttttgtatc       300
     tctatggctt ctctatactt tcttggaaag tatgatgtaa tgttggctat tgtggtccca       360
     taaaaccttt aaactccacc tgttcctatc cgccacgttg cggcatgata tctggcaaac       420
     cctagatcgt attacatacg aacaagccac gaagacccac acacaatcct ctgaaagaca       480
     gaaacagaaa tacataaacc ttgtccctca caaaaatcca caaccctctc tacttaacgt       540
     caagaaccta tccaacaaag acctgtctca agacactata tctgcgcttg ccaaaggccc       600
     taacttcgca gtggcaccta gaaagattcc aaaggaagag attatcagcc aaatagagtc       660
     aaccatctac cgactcccat cagaacaagc agataatatc cgcagacagg taaccaatat       720
     cctttccaaa gccaaacccc ctccaccaaa catcactaga caagagcgat tggccctcca       780
     agacctgaac agggacacag acatcatcgt gcttccagcc gacaaaggca acacgacagt       840
     agtcatgaac acatcagact ataagaaaaa gatgaagaac cttctctcgg acaaagcata       900
     caaaaagctt gacaaagatc caactaatac aatcgcacag aacaccaaga tcctggtgga       960
     aaaaagcaac attcccagta aaaccaaatc aacattaaaa cctacaaatc ctctcccacc      1020
     aagactatac ggactaccaa aagtacacaa accaaacatc cccctcagac cgattgtcag      1080
     cgccatacac tccccgacat acaacttatc ccgcttccta gcacaaacac tacaacccct      1140
     cactggaaaa tccgaatcac acataaccaa ctcaacggac ttcatacaaa agatccaaaa      1200
     aatccgacta cgtcccacag acctgctcgt aagtttcgac gtagaatccc ttttcacaca      1260
     agtcccaata aaagacacat taaacataat aaaggcctca catgaagtcc cctccgacct      1320
     catcccgcta atagagcact gcttaacaac cacttacttc tcctataaca accaatttta      1380
     cgaacaaact tcaggagcgg cgatgggctc tcctatttct cctgtaatcg ccaacatctt      1440
     catggagcat tttgagaaag aggccctcag aaaaacaccc aaaaaaccag aagtttggtt      1500
     ccgttatgta gacgacacat tcgtgatatg gagacacggc agagccgaac tccgtaaatt      1560
     ccttattttc ctcaacaatc aacatccaaa tatccgcttc actatagaca tagaggaaaa      1620
     cggaaaactc cccttcctag atgttcttgt ctctaagaaa gccgacggta ccttaggcca      1680
     tcaagtgtac agaaaaccaa cacacacaga tagataccta catgccgagt cgcaccacca      1740
     cccagcacaa aaacagtctg caatcaattc acttgtacat agagctttca ccatctctga      1800
     caaagaacat ctacagacag aactcaacca cttaaaacta gccttacaga aaaacggaca      1860
     cgacaaaaaa gacataatca aaacaatcaa taaacacgca aacaagacaa cggtctctga      1920
     cacacaatca gacgaaagga tcctatccat tctcccatat gtcaaaggaa caacagatcg      1980
     gattggcagg atattaaaca aacacaatat ccgaactatc ttcaaaccac ccaaaaagat      2040
     aggacaaatc ttaagaaatc ctaaagatca aagacctcca ctcagctccg caggagtata      2100
     caaaatacct tgttcctgcg ggcaagtata cattggagaa accgggagaa tggtcaacct      2160
     acggataaaa gaacaccaac gtgatgtcag gctaaaacac gtcacgcaat cggcattatc      2220
     agaacacaac atcgaaacag gacatcaaat actgtttgac aaaacgacca caatagccaa      2280
     cattacatca tactttccaa gaaagtatag agaagccata gagatacaaa aacaccctaa      2340
     caatctaaat agagataatg gctacaacat aaataaaata tggaaaacca ttctcccggt      2400
     tattgaagac cgaccgattt cccccacctt ccccccccct cccccacccc acaattctct      2460
     tcttttcccc ccaccactcc aacaagtagc gtaatataaa aaggaacggc ccggaggaac      2520
     agctcagtat caggctgctc ctcgccctga tgaagtggac tgcaaggttc acgaaacgtt      2580
     ggcattccaa gaatggatct ggacacggag gaaacccgcg aaacgcataa tctttatata      2640
     gaaagcaccc gtggaagcct caagaatatt tatcaaatat tatttattat atttaaaata      2700
     aatgaataaa                                                             2710
//
ID   Penelope-1_BTa repbase;    DNA;    INV; 3666 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_BTa.
XX
NM   Penelope-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3666
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 964-964 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(936..1676,1628..3292)
FT                 /product="Penelope-1_BTa_1p"
FT                 /translation="MGFYEVLLKTFGIIVLNNFKYLSACLAKTYTSKNRKL
FT                 FLLNCRRKYVIPSFLNFKINISLSQQRNRKKLQTLVSEFQHRILNIAIQDA
FT                 CQEEKIANKQLQSAKEKAEASSSKEIVSRFLNFESQRNEKVFEKTKQAHKE
FT                 KINNVIIRNKTAFQNRFKSFFAKRFDWILNLSNVELPEEVLSVLPLGTKFC
FT                 VPFYEKTRKDEFTMETFARIEPKVKFKEGKLPKKSATLLGRFYLNSTKDTR
FT                 SSEIVSILSKFNKGYTFIRDSKLSRDQKEFFKMFYAQMIKTKNFLKDNKNL
FT                 LVLSADKSNKTVVMDKIVYNNKMLQLLSDTKIYRKIGKCLTFALQNKNNAL
FT                 VKKWFEEKLIGKATLQNFTIVNAIPCRIYGLVKTHKEGMPLRPIVSALKSP
FT                 FYNMSKYFGNILEKVVGKSGNTVKNTYEFVDFLKTQSVPDDFVLASLDVVS
FT                 MYTNIPIKLALDVIKEKWMTIAPHTTLPEDQFLAGIKACLESTVFTFGEEC
FT                 FKQINGLAMGSPVSANVANLVMEYFEEKLFQVFPYKLLFYKRFADDIILCC
FT                 HKDDLDNVFHFFNNFSSNIKFTLEREVNNALNFLDVTVIKNRGKLITSWFK
FT                 KPIFSGRYLNFLSVQPLPQIINVVKNLATRVCLLTHPLLRKDKIKEAKQLL
FT                 IENCYPWSLIESIFAEVINSCYNGFPPRKNREKEETVVGPYLSSCSEKLSA
FT                 AIKPFGLSLVTTNKCNLKGFKSALKTKIPNEKMSDVVYEIPCKGCPGVYIG
FT                 QTSQYVHKRLDGHKFNKHEKTALKQRVKETNHQFDYDNTRVLKQEKNEQVR
FT                 "
XX
SQ   Sequence 3666 BP; 1248 A; 630 C; 668 G; 1120 T; 0 other;
     tatatatgtc taatttcatg gttattttat gtataataaa gcgaacttca tgagttgtat        60
     aaccgtaact ttttatttat tttaaacaaa aaatgtttta caatgcgacg tttcggtggc       120
     ttattattcc caccatcatc aggcagagac tgaggcgaca aaacaaggaa aaacaagaaa       180
     taaacaccta gtcctccgat ccagcacagt cagggaagag aggaaaagat agttacaatc       240
     taacgaacat tacaaacatt gttgcctgag ttacagctat taataaactt tgatggtcaa       300
     caattagaaa gtatcggtac ctaccaaata atcctcaaaa tgggaaaatt ctgtccttga       360
     attcagggcg ttgctatttt taagaatgct taatccttct aaattctaac ggacctgctc       420
     atttttctct tgttttagca ctctggtgtt atcataatca aattgatggt ttgtttcttt       480
     tacgcgctgc ttaagtgccg ttttttcatg cttattaaac ttgtgtccgt caaggcgctt       540
     atgtacatac tgtgaagtct gcccaatgta gacccctggg caccctttgc atgggatttc       600
     ataaaccacg tcggacattt tctcgtttgg gattttggtt tttagagctg atttaaaccc       660
     tttcaaatta cacttatttg ttgttactag cgattatcca aatggtttta ttgcggcact       720
     taatttttca gaacatgagg acaaatatgg tccaaccacc gtctcttctt tttccctatt       780
     tttgcgaggg gggaaaggaa caactcataa ttaacctcat tgaaggttat tatacaactc       840
     ataaagttcg ctttattata cataaaataa ccatgaaatt agacttataa taacacgagt       900
     gaaatgtgaa tagcagtgtc atatgctaat taaatatggg tttctacgaa gtcctactca       960
     agacatttgg aatcattgtt ttgaacaact ttaaatatct gagtgcgtgt cttgcgaaaa      1020
     cgtatacatc aaaaaatagg aagctgttcc tattaaattg tcgacggaag tatgtaatcc      1080
     ctagtttctt gaactttaaa attaacatca gtttgtcaca acaaaggaac agaaaaaaac      1140
     tacaaacatt agtgtcggag tttcagcatc ggatattgaa catcgccatt caggatgcgt      1200
     gccaggaaga aaaaattgcc aataagcagc tccaaagtgc aaaggagaag gcagaagcgt      1260
     catcttcaaa ggaaattgta agccgttttt tgaactttga atcacaacgt aatgaaaaag      1320
     tttttgagaa aaccaaacaa gcgcataagg agaaaattaa taacgttatc attagaaata      1380
     agactgcatt ccaaaataga tttaagtctt tctttgcaaa aaggtttgat tggatactaa      1440
     atttaagcaa tgttgaactc ccagaggaag tcctaagtgt actaccactt ggtacaaaat      1500
     tttgcgttcc cttttatgaa aaaactagga aggacgagtt taccatggaa acttttgctc      1560
     gtatagaacc aaaggtcaaa tttaaagagg gaaaattgcc aaaaaagtcc gcaacattgt      1620
     tgggtagatt ttatctaaat tcaacaaagg atacacgttc atccgagata gtaagttaag      1680
     tcgtgatcaa aaggagttct ttaagatgtt ttatgctcaa atgattaaaa caaaaaattt      1740
     cctcaaagat aataaaaact tgttagtcct aagcgctgat aaatcaaata aaactgtagt      1800
     aatggataag attgtttata ataacaaaat gttacaacta ttatctgata ccaaaattta      1860
     taggaaaata ggcaaatgtc taacttttgc actgcaaaac aaaaacaatg cgttggtaaa      1920
     aaagtggttt gaggaaaaat tgataggcaa agccacgttg caaaatttta caattgtgaa      1980
     cgcaattcca tgccgaattt atgggttggt caaaactcat aaagagggga tgccacttcg      2040
     tccaattgta agtgccttaa aaagtccgtt ttataatatg tctaagtatt ttggaaatat      2100
     tctagagaaa gttgtaggga aaagtgggaa cactgtcaag aatacttatg aattcgtaga      2160
     ttttctcaaa acccaatcag tacctgatga ctttgtttta gcttcattag acgttgtgtc      2220
     tatgtacaca aatattccga taaaactagc ccttgatgtt ataaaagaaa aatggatgac      2280
     aattgctccc catacaactt tgccagagga tcaattttta gccggcatta aagcatgttt      2340
     agagtcaaca gtattcactt tcggcgaaga atgcttcaaa cagataaacg gcttggcaat      2400
     ggggtcacca gtaagcgcca atgttgccaa cctggtaatg gaatactttg aggaaaaatt      2460
     atttcaagtg ttcccttata aattgctatt ctataaacgt tttgcagacg atattatctt      2520
     atgctgtcac aaagatgatc tcgacaatgt tttccatttt ttcaataatt tttcgagcaa      2580
     tatcaaattt acactcgagc gtgaagtcaa caacgcttta aatttcttgg atgtcactgt      2640
     cataaaaaac agagggaaat tgatcacgtc atggtttaaa aaaccaatat tttctggtag      2700
     atatctcaat tttttgtctg tgcaaccact tccacaaata atcaatgtgg taaaaaatct      2760
     tgcaacgcgt gtatgtttgt tgacacatcc tttgctcaga aaagacaaaa taaaagaggc      2820
     aaagcaatta ttgattgaga attgttaccc gtggtcactt atcgagtcaa tttttgcaga      2880
     ggtaataaat tcttgctaca acggtttccc ccctcgcaaa aatagggaaa aagaagagac      2940
     ggtggttgga ccatatttgt cctcatgttc tgaaaaatta agcgccgcaa taaaaccatt      3000
     tggattatcg ctagtaacaa caaataagtg taatttgaaa gggtttaaat cagctctaaa      3060
     aaccaaaatc ccaaacgaga aaatgtccga cgtggtttat gaaatcccat gcaaagggtg      3120
     cccaggggtc tacattgggc agacttcaca gtatgtacat aagcgccttg acggacacaa      3180
     gtttaataag catgaaaaaa cggcacttaa gcagcgcgta aaagaaacaa accatcaatt      3240
     tgattatgat aacaccagag tgctaaaaca agagaaaaat gagcaggtcc gttagaattt      3300
     agaaggatta agcattctta aaaatagcaa cgccctgaat tcaaggacag aattttccca      3360
     ttttgaggat tatttggtag gtaccgatac tttctaattg ttgaccatca aagtttatta      3420
     atagctgtaa ctcaggcaac aatgtttgta atgttcgtta gattgtaact atcttttcct      3480
     ctcttccctg actgtgctgg atcggaggac taggtgttta tttcttgttt ttccttgttt      3540
     tgtcgcctca gtctctgcct gatgatggtg ggaataataa gccaccgaaa cgtcgcattg      3600
     taaaacattt tttgtttaaa ataaataaaa agttacggtt atacaactca tgaagttcgc      3660
     tttatt                                                                 3666
//
ID   Penelope-1_CoFl repbase;    DNA;    INV; 2780 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_CoFl.
XX
NM   Penelope-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2780
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2406-2406 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           52..2454
FT                 /product="Penelope-1_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MAQRRFLLKCRYARVFPNHIKHLYNKCSSVNFRCKPI
FT                 HADFNKSTLHFCQKLLNFEISDINTHIRFLQNSISRLKDHIASLKLDYNIR
FT                 ERHYKFVNIKQNTIYRRSNHTLHKKFKKILPKTNTTTSNNDSIHNLTNIAI
FT                 PKDVAEIASLGPNFNLPSTFRERDFLCIIKNLEVGLSHLDTNDRVKTEIRD
FT                 KVSQYLVNACKQKPAISRKDRQYAKNLKSTKNFLNKNPDIFFTSADKGNVT
FT                 VCLKKSDYTERMHNLLSDKSTYKIISKNPLNSLQKRTSNILKNLNSNGFLS
FT                 RTYHPNALSLTDTTLAKCYGLPKIHKVDAPLRPIVSLINSPTYFLAKVIYD
FT                 ELKKSVNVPISHINNSFELKNKLKNIKPTTNYRLMSLDVSSLFTNIPLELV
FT                 LRSIDRRIVTIMNKCRIPVDEIRQCTEFLFNNTFFTFDNIFYQQIFGTPMG
FT                 SPISPLFADLVMDDLENDCLSILKNNYNIIPSFYFRYVDDVLLFINVDHID
FT                 QILNIFNSYHPKLQFTYEMEIDKKLNFLDLTIIRNSNYFNFDWFEKPTSSG
FT                 RILNYFSGHPVSYKRNIVFNLVDRAILLASTRFHGVNIARVKNLLIKNNYP
FT                 FNFINKNIKVRLKRHKYSNHNRSTTNTYPLCKIGIPYIDNNFEKISTMLKP
FT                 YNIHTYPLINNKLQHIVRLGKDTTNKHKQTNVVYKFYCKNCPASYVGETKR
FT                 AAEVRISEHMKSKNSDSVVCAHQINFDHEFDWDNFKILDKESNYKKRIISE
FT                 MLYIKLDKHNINRKEDVLSFNRAYLPLLRKFKCPDRVHRPLPSTFAAPPI"
XX
SQ   Sequence 2780 BP; 978 A; 556 C; 385 G; 861 T; 0 other;
     tccaatgctt taaaacgctg gaaggacctg cacatacaac tatcaaccag tatggcacaa        60
     cgaagatttt tactcaaatg caggtacgcg agggtatttc ctaaccacat aaaacacctc       120
     tacaataagt gttcaagtgt caatttccgt tgcaaaccga tacatgccga tttcaacaaa       180
     agtaccttac atttctgtca gaaacttctg aacttcgaaa ttagcgacat taacacacat       240
     attagatttt tgcaaaactc aatttcccgt ttaaaagatc acatcgcgtc attaaaattg       300
     gactacaata ttcgtgaacg acattataaa tttgtcaaca tcaaacaaaa taccatctac       360
     agaagatcta atcatacgtt acataaaaaa tttaaaaaaa tcttaccgaa aacaaacacc       420
     acaaccagta ataatgattc aatacacaat ttaacgaata tagccattcc taaagatgtc       480
     gccgaaattg catctcttgg accgaatttc aatctcccat caacttttcg tgaacgcgat       540
     tttttatgta ttatcaaaaa cctagaagtt ggtctctcac acctcgatac gaacgatcga       600
     gtaaagaccg aaatccgtga caaagtatct caatatttag ttaatgcttg taaacaaaag       660
     ccagctattt ctagaaagga ccgccaatat gcaaaaaatt taaaatcaac aaaaaatttt       720
     ctaaacaaaa atcccgatat atttttcacc tctgctgaca aaggcaacgt tacggtttgt       780
     ctcaaaaaaa gtgactatac ggaaagaatg cataatttac tgtctgataa atcgacgtat       840
     aaaattattt caaaaaaccc attaaactct ctacaaaaga gaacctctaa cattttaaag       900
     aatctcaact ctaacggctt cctttctaga acataccatc ccaacgcttt gtcgctcaca       960
     gatacaactc tagctaaatg ttatggcttg ccgaaaattc acaaggtcga tgccccttta      1020
     cgtcctatcg tctctcttat caatagccct acatattttc tagcaaaagt aatttacgat      1080
     gaactcaaga agtcagtcaa cgttccaata tcacacatta ataatagctt tgaattgaaa      1140
     aacaaactaa aaaatataaa acccactact aattatagac taatgtcttt agatgtcagc      1200
     tccctattta ctaatattcc tctagagttg gtactacgga gcatcgatcg acgtattgtg      1260
     accataatga ataaatgtcg aatcccggtt gatgaaattc gacaatgtac agaatttttg      1320
     ttcaataata ctttttttac ttttgacaac attttttatc aacaaatttt cggcacgcca      1380
     atgggttctc ctatttcacc tttgtttgct gaccttgtaa tggacgacct ggaaaatgat      1440
     tgtctctcca tcttaaaaaa taactataac attattccat ctttttattt tcgttacgta      1500
     gatgatgtat tactttttat taatgttgac catattgacc aaattttaaa catttttaat      1560
     tcatatcatc ccaaactaca atttacatat gaaatggaga ttgacaagaa actcaacttt      1620
     ttagacttga cgataataag aaattctaat tattttaatt ttgactggtt tgaaaaacct      1680
     acttcttccg gacgaatctt aaattatttt tctggtcatc cagttagcta taagagaaat      1740
     attgttttta atttagttga tagggcgatc ttacttgcca gtacacgttt tcacggtgtg      1800
     aatattgcta gggtgaaaaa cctgttgata aaaaacaatt acccttttaa ctttattaat      1860
     aaaaacataa aggtcagatt aaaaagacac aaatatagta atcataacag aagcactaca      1920
     aacacctacc ctctctgcaa aattggcata ccatacattg acaataattt tgaaaaaatt      1980
     tcaaccatgt taaaacccta caatattcac acttaccctc ttattaacaa taaactgcag      2040
     catatcgtcc gcttaggaaa agatacaacg aataaacata aacagacaaa tgtagtatat      2100
     aagttttatt gtaaaaattg tcctgcgtca tatgtgggtg aaacaaagcg agcggcggag      2160
     gtccgcatta gtgaacatat gaaaagtaaa aactctgatt ccgttgtttg tgcacaccaa      2220
     atcaattttg accatgaatt cgattgggat aactttaaaa tccttgacaa agaatccaat      2280
     tacaaaaaaa gaattatttc cgaaatgctt tatataaaac tcgacaaaca caacatcaat      2340
     agaaaggagg atgtgctttc ctttaataga gcataccttc ctttactacg aaagtttaaa      2400
     tgtcccgatc gagttcatcg ccctttaccg tctacctttg cggctccgcc tatataagcg      2460
     ctggcttgtt gttgtaattt attgtcagtc gatagcacga caggtgacga gtaagtcaac      2520
     caaacttacg aattctcgcg tacctgcggt aacaatttac atcaaaattt attgtatttt      2580
     gtgtttgagc cttccagatc actcattgtg tgtttttaat tttaattttg tagcctgatg      2640
     aggctgacgc atattgtcag cgaaacgttg cgcattaata aatcaacgca agaaaattta      2700
     aatacacttt acttgtattt atttattttc tcacatttcg cccccaacgg atcactgatc      2760
     actttgaatt tccaaattca                                                  2780
//
ID   Penelope-1_CQ repbase;    DNA;    INV; 1702 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1702
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the southern house mosquito.";
RL   Repbase Reports 11(1), 600-600 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity. The consensus is severely truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..576,573..1295)
FT                 /product="Penelope-1_CQ_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="VQHDIIYSWAEIAPHTQICLDLFLEIVAFLMDASYFV
FT                 FRNQHYLQIQGTAMGNPASPVFADLTMETLIDNVLHTISCPITTVHKYVDD
FT                 LFLVIPEDKIEEVLATFNAYHDSIQFTYEVERDGRLPYLDMTLVRQADGTI
FT                 RTEWYTKEIASGRLLNFLSIHPLPQKINIATNFINRVYNLTFVGGDKDKEN
FT                 DKQIVHKYLSLNDYPRSLINRCLNRKNNPNPQNRPNHPNSEELQRYRSIPY
FT                 IPTLTPRIAKLLQQDYPNIVVAPRSTHTVNNLYTRIKDPIPMLNRHNVIYC
FT                 IKCDQCECRYIGMTSNLLKNRLSGHRSDVNKLDQLIQSGHTYTDVEVQAHK
FT                 EKTALVSHCIDTGHRFDTTQAKILDQSFKRSSLPLLEMIWIHNTADTVNKR
FT                 TDTDGLNSTYAGILHVLHKHKTKTKPQKHTTQSQLNQST"
XX
SQ   Sequence 1702 BP; 584 A; 456 C; 294 G; 366 T; 2 other;
     gtacaacacg acatcatcta cagctgggcc gagattgctc cacacacaca gatctgtctt        60
     gatctgttcc tggaaatcgt agccttccta atggatgcga gttacttcgt gttccgtaac       120
     caacactacc ttcaaatcca gggtaccgcg atggggaatc cagcatcgcc cgtgtttgca       180
     gacctgacga tggaaacgct gatcgacaac gtgttacaca cgatcagctg tccsatwact       240
     acagtgcaca aatacgttga cgatctcttc ctcgtcatac ccgaagacaa gatcgaggaa       300
     gttctggcca ctttcaacgc ataccatgac agcatccagt tcacctacga ggttgagcga       360
     gacgggagac tcccatacct cgatatgaca ctggtaagac aagcagatgg taccattcgg       420
     acagagtggt acacgaaaga gatagcatca ggccgcctcc ttaacttcct atccattcat       480
     cctcttcccc aaaaaatcaa tattgcaacc aattttatca accgtgttta caatctcacc       540
     tttgttggtg gtgacaaaga caaagaaaat gacaaatagt tcacaaatac ctttccctaa       600
     acgactatcc ccgctcatta atcaatagat gcctcaaccg aaaaaacaat cctaatcccc       660
     aaaatagacc caatcaccct aattccgaag aactccaaag atacagatcc attccttaca       720
     tcccaacact tacaccccgt attgccaaac tactacaaca agactacccg aacatcgtag       780
     tagcacccag atccactcac actgtcaaca acctctacac acggatcaag gacccgatcc       840
     cgatgctgaa ccgacacaac gtgatctact gcatcaaatg tgaccagtgt gagtgtagat       900
     acatcggcat gaccagcaac ctgctcaaaa acaggctgtc tggccatcgc agcgatgtaa       960
     acaaactgga tcagctgatc cagtccggcc acacgtacac cgacgtagag gttcaggctc      1020
     acaaggaaaa aaccgcgctt gtgtcccatt gtatcgatac cggccaccgg ttcgatacaa      1080
     cacaagccaa gatactggac cagtccttca agagatcatc tctccctctc ttggagatga      1140
     tctggatcca caacacagct gacactgtca acaagaggac cgacaccgat ggcctgaaca      1200
     gcacatacgc tggaatacta catgtcctac acaaacacaa aaccaaaaca aaaccacaaa      1260
     aacacacaac acaatcacaa ctgaaccaat ccacctgaca gttagcaatt agacgttgta      1320
     cagtacaaag tgacccagca gttgaatgtt gttttacaac aatttatttg gacaaacatg      1380
     ttagtatttc acaatagttt acaaaacaat attaaattaa ttctttaaac agtgatgtgc      1440
     agcaaacgta aaggacagtt taacaatagg actaaaacat ttttgacaag aaacagacaa      1500
     ctagtaagta cacaaaacac aaccaaacac acacaaattg taaaagcttg acatttttag      1560
     taaaccccct gaagaaggcc tcaaaataaa ggccgaaacg tcggtgaagt agagaaaatc      1620
     tgtttttctt tttcgacaag actgctcgcc aaaaccagaa agataaaaat aatcagtcgt      1680
     tgcgaacccg gatcaaaata aa                                               1702
//
ID   Penelope-1_DEl repbase;    DNA;    INV; 2491 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.04, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_DEl.
XX
NM   Penelope-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2491
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like retrotransposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 575-575 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..2274
FT                 /product="Penelope-1_DEl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MLQKQLDPNDFTSFMESEQNIAKKLTKTTKMRQIRKL
FT                 ERLQMERSKVLTDNKKTADWFVNKTDTEFPPAIKSLLAKGPKFALPIEKKK
FT                 FPLLKYIADGEEILKTIIDKEKQEEARTQFSLLIKDHKTSNKESAFDRAIL
FT                 DTVGQTRRFLKENDDILILTSDKGNKTVAMNKDDYNQKMKDILKDMNTYRT
FT                 LRKDPTSRLQTKNNEIVDKLLKMELISRIERNKLTTTTALPPRIYGLPKIH
FT                 KEGTPLRPICSSIGSPSYALCKYIIDILKNITIDSKYNIKNSEEFKDKINN
FT                 TYIGDDERLISFDVISLFPSIPTDLALDIIKNKWTIIQKHSKIPQTIFMDI
FT                 IKFCIQENRYFKFENNFYTQLKGMPMGSPASPVIADIVMETLLDNTLEKLR
FT                 RPPRLLTKYVDDLFAIIQEDDIKTTLTMLNSFANNIKFTMELEENDQLAYL
FT                 DSVIIRRGNRLKLKWYKKPIASGRIINFNSKHPKQMIINTARSCIQRMLKI
FT                 SDTDYHEETTQEIKSMLTDNDFPKHIIKTLLSEHKTTKQNSVKNNKNKKYM
FT                 SITYVPALSERVAKSECYDKENISIAHKPDHTLKSIYNRTKSKINEIDKKD
FT                 VIYKIPCNGNNNEICNMIYIGTTKSKLKTRLAQHKSDFKARHHTNAQKTAL
FT                 MSHCAKSNHSPNFEEASILSQEQHYAKRFTIEMLHIIKTPTDIRMNYKTDT
FT                 DNCAHLYRHLLGKEKLVNNSTSPDADV"
XX
SQ   Sequence 2491 BP; 1078 A; 491 C; 380 G; 542 T; 0 other;
     attactacca tatgaaaata ttaagcttgc taatcaaaca taaacatcat atacaaaaaa        60
     agactaatca aaaagagaga ggataagaga acgatgttac aaaaacaact agacccgaac       120
     gacttcacat catttatgga gagcgagcag aacattgcca aaaaactaac aaaaacaacc       180
     aagatgagac aaataaggaa actagaaaga ctgcagatgg aacggagcaa agttctaaca       240
     gacaacaaaa aaacagctga ttggtttgta aacaaaacgg acaccgagtt cccgccagca       300
     ataaaatcac ttttggcgaa gggtccaaag ttcgcgctcc caatagagaa gaagaaattc       360
     cctctcttaa aatacattgc ggacggagag gaaatcctca aaactattat tgacaaagag       420
     aaacaagaag aggcgcgaac ccaattctct ttgcttatca aagaccacaa aacatcaaac       480
     aaagaaagtg catttgatcg tgcaatacta gacacagtgg gacaaacaag gagatttctt       540
     aaagaaaatg acgacatttt aatattgacc tcagacaaag gtaacaagac ggtagctatg       600
     aacaaagatg actacaacca aaaaatgaag gacatattaa aggatatgaa cacatacagg       660
     acattaagga aagaccccac ctctagacta caaacaaaaa ataacgaaat agtggacaaa       720
     ctattaaaaa tggaacttat ctcaaggatc gaaagaaata agttgacaac caccacagca       780
     ttaccaccac gaatatatgg actacccaaa attcataaag aaggaacccc tctacgacca       840
     atctgctcct ccatcggatc accatcctat gcactatgca aatacataat tgacatatta       900
     aaaaacataa caatagactc caaatataac ataaaaaatt cagaagaatt caaagacaaa       960
     atcaacaaca catatattgg cgacgatgaa agattaattt catttgacgt aatttcatta      1020
     tttccgagta taccgacaga tctagccctg gatataatta aaaacaaatg gacaataata      1080
     caaaaacaca gtaaaatacc gcaaacaata tttatggaca taataaaatt ttgtattcaa      1140
     gaaaacagat atttcaaatt tgaaaacaat ttttacacac aattaaaagg aatgcctatg      1200
     ggatcgccag cctcgccggt cattgcagat attgtaatgg aaactctcct ggacaacacg      1260
     ttagaaaaac taagacgacc tccaagatta ctgacaaaat acgtagatga cctgttcgca      1320
     atcattcaag aggatgacat taaaactaca ctgaccatgc tcaactcttt cgccaataat      1380
     ataaaattta caatggaact agaagaaaac gatcaattag cttatttgga ctcagtaata      1440
     attagacgtg gaaaccgatt aaaattaaaa tggtacaaga aaccaattgc gtccggacga      1500
     atcatcaatt ttaactccaa acacccaaaa caaatgataa taaatacagc tagaagctgt      1560
     atacagagaa tgctcaaaat ttcagacacg gattaccacg aagagacgac tcaggagata      1620
     aaatcaatgt tgacagacaa tgatttccca aaacacataa taaaaacatt attatcggaa      1680
     cacaaaacaa caaaacaaaa tagcgttaaa aacaataaaa acaaaaaata tatgtcaatt      1740
     acatacgtcc cggcattatc cgaacgtgta gcgaaatcgg aatgctacga caaagaaaac      1800
     ataagtatcg cacataaacc ggaccacaca ttaaaatcta tatacaacag aacaaaatca      1860
     aagataaatg aaattgacaa aaaagacgtg atatataaaa taccgtgcaa cggcaacaac      1920
     aacgaaatat gcaacatgat atatatagga acaacaaaat cgaaactaaa aactagacta      1980
     gcacagcata aatcggactt caaagctaga caccatacga acgcgcaaaa aacagcactc      2040
     atgtcccact gtgccaagag taatcactca ccgaacttcg aagaggcgag tatcttatca      2100
     caagaacaac actatgccaa acgattcacc atagaaatgc tacatatcat aaaaacacct      2160
     acagacatac ggatgaacta caaaacggac actgacaatt gcgctcattt atatagacac      2220
     ttactaggga aagaaaaatt agttaacaac tccacgtcac cggacgcaga cgtgtaaatt      2280
     aaatgtatgt caaatgtaaa ttgttttctg tttgttaaga atattaaaat cgttgttatt      2340
     attttatagt tgtcctgaag acggttgccg aagagcatcc gaaatatatt gacaaataac      2400
     caaaattaaa ataattttgt gttttttttc aacatcctga cctcgagccg gctaacaatt      2460
     aatatacttt ggaaaggtcg ccaaaaccaa c                                     2491
//
ID   Penelope-1_DF repbase;    DNA;    INV; 1403 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.07, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_DF.
XX
NM   Penelope-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1403
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(7), 1365-1365 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1181
FT                 /product="Penelope-1_DF_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="IVNNKWTILKEHTXTPSKVFLDIVKFCIQDNRYLKYE
FT                 TKLXIXLKGMPMGSPASPVVADIVXETLLQNTTEKLRRPPRLLTKYVDDLF
FT                 GIIKEDEIENTLTTLNAFNXNIKFXMELEKDNCIAYLDTVVIRRGNELKLK
FT                 WYKKPIASGRIINFNSRHPKMMIRNTASSCINRMLRISDAIFHEEIINEIK
FT                 TILTNNDFPKHMIKSLLDKYLKSDNNQRPPKKERTYISVTYVPGLSERLAQ
FT                 SDCYDKENILIAHKPDNTLKQIFNKTKSKIAPTDKKDVVYRIPCNGDGKNN
FT                 CNSIYIGTTKSKLKTRLSQHKSDFKLRHQTNTQKTALMSHCAKQGHSPNFE
FT                 ETTILAQEQHYRKRYMMEMLHIINTPTNIRMNYKTDTENCAHIYRHLLGK"
XX
SQ   Sequence 1403 BP; 563 A; 259 C; 230 G; 342 T; 9 other;
     acatagttaa taataaatgg acgatattga aagaacacac twaaactcct agcaaagtat        60
     ttctggacat agtwaaattc tgtattcaag acaaccgata tcttaaatat gaaactaaat       120
     tatamatama gttaaaagga atgccaatgg gatcacccgc ctcaccggta gttgctgata       180
     ttgtcatsga aactttatta cagaacacga cggagaaatt aagacgaccc ccgagactat       240
     tgacgaaata tgtggacgac ctttttggaa taattaaaga ggacgaaata gaaaatacat       300
     tgaccacctt aaatgccttc aataawaata ttaaattcas gatggaacta gaaaaggaca       360
     attgcatagc atatttagat acagtcgtaa ttagacgtgg aaacgaacta aaattaaaat       420
     ggtataagaa acccatagca tcaggacgaa tcatcaactt taactctcga catccaaaaa       480
     tgatgatwag gaatacagcc agcagctgta taaataggat gctaaggatt tcagacgcaa       540
     twttccacga agaaataatc aacgaaataa aaaccatatt gacaaataat gactttccga       600
     aacacatgat taaatcttta ttggacaaat atttaaaatc agacaacaat caaagaccac       660
     caaaaaaaga acggacctac atctcggtta catatgtacc tggactttca gaacgccttg       720
     cacagtctga ttgctatgac aaagaaaata ttttaatagc ccacaaaccc gacaacacat       780
     taaaacaaat atttaataaa actaaatcaa aaatcgctcc cacagacaaa aaagacgtag       840
     tgtaccgaat accgtgcaat ggagatggca aaaataattg caatagtatt tatataggta       900
     cgaccaaatc aaaattaaaa actagactgt cacaacataa atctgatttt aaattaaggc       960
     accagacgaa tacacaaaaa acagcactca tgtcccactg tgccaaacag ggacactctc      1020
     cgaactttga agagacaact atcttggcgc aagaacaaca ctacaggaag cgctacatga      1080
     tggaaatgtt acatataatc aacacgccga caaacattag gatgaactac aaaacggaca      1140
     cagaaaactg cgcgcatata tatagacatt tgttagggaa gtaggtttag tttataactc      1200
     cacgtcactt ggcgcagacg tgtcaaaatg tatgtcaata tttaaattgt aacaaaaaag      1260
     tgtattttga tgttgattgt tttttgtttt cgattagttg ccctgaagac ggttgccgag      1320
     gagcaaccga aatatattgg tcaaaaaaca taaattgtgt ttttaatatc acccagacct      1380
     tgagccggca aaacaccaaa tat                                              1403
//
ID   Penelope-1_DK repbase;    DNA;    INV; 1384 BP.
XX
AC   .
XX
DT   28-JUN-2012 (Rel. 17.07, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the Drosophila kikkawai
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_DK.
XX
NM   Penelope-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1384
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like retrotransposons from the Drosophila kikkawai
RT   genome.";
RL   Repbase Reports 12(7), 1366-1366 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1384 BP; 582 A; 304 C; 200 G; 296 T; 2 other;
     tatttcaaat ataatgacac aatcttcacg caattaaaag gcatgcccat gggatccccc        60
     gcgtcaccaa tcatcgctga cattgtgatg gaagaacttc tagacaaagc aatcaacaag       120
     ctcgacgtac gaccaaggat cctgacaaaa tatgtagacg acctattcgc gattgtwaaa       180
     gacactgaaa ttcaaagaac acttgacaca ctaaattcgt accacaagaa catcaaattt       240
     acaatagaat aagaagaaga cgcaaaacta ccctatctag actcaataat caacagacga       300
     ggaaacgaaa taaaattaaa atggtataag aaaccgactg cgtcaggacg aataattaat       360
     taccattcta gacacccaaa aaccatgatc attaatacag caatcggctg tatcagacgg       420
     atgataaaca tatcggacga gatataccac gacgaaataa aaactgaaat taaaacaata       480
     ctgcgagata acgactttcc gaacaaaatc atcaagactc ttttaaagaa acacaacaat       540
     taacaacaaa aaacaatcag aacagccaaa aacttatatg tccactatat atgtacccaa       600
     actgtccgaa agattgtcaa aatcaaactg ctacaacaaa gacggaataa cgttagccca       660
     caaaccaaca aacacgttaa aagacttttt taataaaacg aaatcaagat tattgacaac       720
     agaaaaaaac aatgtcatct acaaaattcc gtgcaacggt accgacaaca aaccatgcaa       780
     caacatatac ataggcacaa caaaattaaa attaaaaaca agaatagccc aacacagatc       840
     tgactacaaa ctacgacacc acactaacat caaaaaaaac agcactcatg gcccactgtg       900
     cgacaagcgg tcactctccg aacttagagg agacaacgat actgcaacaa gaacaacact       960
     acaagaagcg gtatactctg gagatgctac acataatcaa cactccgaca aacatacgac      1020
     tgaattacaa gactgacact gaaaactgcg ctcacatata cagacactta attagaagaa      1080
     aaacagtaca aaactcmacg tcgaacagag cggacgtgta aaataatgta ggtcgaaaaa      1140
     gttatgtttt ttattgtaaa ttttatgtag attaattgtt taacattgtt atagttgccc      1200
     tgaagacggt tgacgttagt tcaaccgaaa tatatcggac caaactgaat aaaaagcttt      1260
     ttatttattt tgatactcca cccccctccc tgaccacaag ccggctcaac aacatataaa      1320
     ccaaggaaag accgccaaaa accacaattg gccaatatta ttataataat attgattgtg      1380
     tatt                                                                   1384
//
ID   Penelope-1_DRh repbase;    DNA;    INV; 2733 BP.
XX
AC   .
XX
DT   02-JAN-2012 (Rel. 17.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2733
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1690-1690 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..2470
FT                 /product="Penelope-1_DRh_1p"
FT                 /translation="MGYTHIKNHYNNYKDIINKFQTTYKKQVKLKAGIIFL
FT                 LKCRKSQLIPNFLKNTTKCNKLFIFDNDAHPDIRRALARHSHIFHKKVLNI
FT                 IIKHKHDLMKELNKRVKETKEILERQLNSADLQTFMKSERNVANKLTTTLK
FT                 ERHERKYRRLQKERNNIFTNNNKTNDWFVNKTNVEFPPDVKALLAKGPKFA
FT                 IPIEKKNFPLFKYIADGEELVQTLIGKEQQEESRTKFSLLIKDYMTSVRES
FT                 AIDRAILDTVGQTRKFLKENDEILILTSDKGNKTVAMDKDTYNQKMNNILE
FT                 ERNTYRILRKDITSKLQTRNNELAENLFTKGLISRSERNKLVTTTALPPRI
FT                 YGLPKIHKEGTPLRPICSSIGSPSHGLCKYISNILKNITIDSSYNIKNSVE
FT                 FKERINNTYICDDEKLISFDVVSLFPSIPIDLALDTIREKWTKIKEHTNMP
FT                 KKMFMDIVQFCIQDNRYFKFNDDIYTQLKGMPMGSPASPIIADIVMEELLD
FT                 NTLKKLGHKPRLLTKYVDDLFAIVKEDEIQNTLDALNSFNKNIKFTLEQEE
FT                 DGGLAYLDSMVHRQGNILKLKWYKKPTASGRIINFNSKHPKTMIISTAVGC
FT                 IQRMLAISDNIFHEETKNEIRQILKDNDFPNHLIRTLIKRHQNMEQKTKCR
FT                 EPTQYMSVTYIPRLSERLKKSEFYNKQKITIAHKPNNTLRPIFNKTKSKIQ
FT                 MFDKNNVVYKIPCNGDTNEKCDSIYVGTTKSKLKTRISQHRSDFKLRHQAN
FT                 IQKTALMAHCKTSGHSPNFEATTILEQEQHYKKRFTIEMLHITNTPTSIRL
FT                 NYKTDVENCAHIYRHLLNNN"
XX
SQ   Sequence 2733 BP; 1174 A; 493 C; 422 G; 643 T; 1 other;
     aaacatggga tatacgcata ttaaaaacca ctataacaac tacaaggaca taataaacaa        60
     attccagaca acatataaaa aacaagtaaa attaaaagct ggtattatct ttttgttaaa       120
     atgtagaaag tcccagttaa ttccaaattt tttaaagaat acaactaaat gtaataagct       180
     atttatattt gacaatgacg cacatccaga cattagaaga gccttagcta gacattcaca       240
     tatattccac aagaaagtac taaacattat aataaaacac aaacatgact taatgaagga       300
     actaaacaaa agggtaaagg aaaccaaaga aattctggag aggcagttaa actcagctga       360
     cttacaaacg tttatgaaga gcgagagaaa cgtcgcgaat aaactaacaa caacattgaa       420
     agagagacat gagaggaagt atagaagact acaaaaggaa cggaataata tattcacgaa       480
     caacaacaaa acgaacgatt ggtttgtcaa caaaacgaat gtggagttcc cgccagacgt       540
     gaaagcactt cttgcaaagg gtccaaagtt cgcgatacca atagagaaga agaatttccc       600
     tctcttcaag tatatagcgg acggagagga attggtgcaa actcttatag gtaaagagca       660
     acaagaagag tcacgcacta aattctcttt acttattaaa gattatatga cgtcggttcg       720
     ggaaagtgca atagatcgcg caatactaga cacagtgggg cagacacgaa aatttttaaa       780
     ggaaaatgac gaaatactaa ttttaacttc tgacaaagga aacaagacag ttgctatgga       840
     caaagatact tacaatcaaa aaatgaataa cattttggag gaaaggaaca catatcggat       900
     tttacgaaag gatataacat cgaaacttca aacaagaaac aatgaattag cggaaaatct       960
     attcacaaaa ggacttattt cacggagcga aaggaataag ttagtcacga caacggcatt      1020
     accaccacgc atatacggac taccaaaaat ccacaaggaa gggactccat taagacccat      1080
     atgctcatct ataggatcac catcacacgg actttgtaaa tatatttcaa acatattaaa      1140
     gaacatcacc atagactcca gctacaacat caaaaactca gtagaattta aagaaagaat      1200
     caacaacacg tacatctgtg atgatgaaaa attaatatca tttgatgtag tctcactatt      1260
     tcccagcata cctatagacc ttgcactaga cacaattaga gaaaaatgga caaaaataaa      1320
     agaacataca aatatgccga aaaaaatgtt tatggacata gtacaatttt gcatacaaga      1380
     caacagatat tttaaattta atgacgatat atacacacaa ctaaaaggaa tgccgatggg      1440
     atcccctgct tcaccaataa ttgcagacat agtaatggaa gagctattag acaacacttt      1500
     gaaaaaacta ggacacaaac caagactttt gacgaagtat gtggatgatt tattcgcaat      1560
     agtaaaagaa gacgaaatac aaaacacact tgacgcttta aactctttca ataaaaatat      1620
     aaaattcaca ctggaacagg aagaagatgg aggactagca tatttggact caatggttca      1680
     tagacagggg aacattctaa aactaaagtg gtataaaaaa ccaacagcat caggacgaat      1740
     catcaacttt aactcaaaac accctaaaac aatgattatc agtacagcgg taggttgtat      1800
     acaacggatg ctagccattt cggacaacat ttttcatgaa gaaaccaaaa atgaaataag      1860
     acaaatttta aaggacaacg acttcccaaa ccatctaatt agaacnttaa ttaaaagaca      1920
     ccaaaacatg gaacaaaaaa caaaatgtag agaacctaca caatacatgt ccgtaacata      1980
     tataccaaga ctatcagaac gccttaaaaa gtcagaattt tacaataaac aaaaaataac      2040
     aatagcacac aagcccaaca ataccctacg accaatattc aacaagacca agtccaaaat      2100
     acaaatgttt gacaaaaaca atgttgtata taaaatacca tgcaatggag atacaaatga      2160
     aaaatgtgac agtatatatg taggaacaac taaatccaaa ctaaaaactc gaatatcaca      2220
     acacagatca gacttcaaat taagacacca agctaatata caaaaaacag cacttatggc      2280
     ccactgtaaa accagcggtc actcgccaaa ttttgaagca acgactattt tggaacaaga      2340
     acaacattac aaaaaacgct tcaccataga aatgttacat ataacaaaca cacccacaag      2400
     cataagactg aactacaaaa cagacgttga aaattgcgct cacatttaca gacacttact      2460
     taataacaac tagtattaat ctccacgtcc gacggtgcag acgtgtaaaa ttatgtaggt      2520
     gtaataattt ttaaagcttt gttttttatt gtctaaattt atgttatttt atgtgttttt      2580
     atgttgatta tagttgccct gaagacggtt gccgaagtgc aaccgaaata tattggaaaa      2640
     ataaaaaata aaatttaaaa acttttattt aaaacatttt tcaattgttg acctcgagcc      2700
     ggaaaaactc aaaaaattta aacatacatc aaa                                   2733
//
ID   Penelope-1_DTa repbase;    DNA;    INV; 2699 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.10, Created)
DT   31-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Penelope-like retrotransposon from the Drosophila takahashii
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2699
RA   Bao W.;
RT   "Penelope-like retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5938-5938 (2021).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(34..621,625..2460)
FT                 /product="Penelope-1_DTa_1p"
FT                 /translation="MGYANVXRSCNNNTKTTINQFQSKTSKITKLTSXIKF
FT                 LLRXRKIRLIPRFIQQTTKYNSIFNKDQEIPFHIKQSLLRISTNFHQKLLG
FT                 LIIKMXHQQLADETKQLKRAKTTLQRQLSTDDATTIFQTVDAXTKKLTTLI
FT                 RGSQQEKFIKLRSDRNNILVNNNNTGCFVNKTEAEFXLNVQALLSKGSKFQ
FT                 SRISSLLVQSIPGKEEQESARTKLSLLIKDSTTRTKESAIDRAISDTVGQT
FT                 KKFLNEXKDIXILNSDKGNVTVAMKKEDCRMKMKNILDDLATYRILRKDPT
FT                 SRLQTKNNLLVEKLFNMELISRNERNRLKTNTALPPRIYGLPKIHKEDTPL
FT                 RPICSMINSPSYHLCKYVCDILKNLTTDSKFNIKSAIEFKNKVNDAYITDD
FT                 EKMVSFDVVSLFPSIPTGLALTVIQSKWKDIQEHTKIPKTLFMDILSFCIT
FT                 ENRYFKWENDIYTQLKGLPMGSPASPIIADIIMEEILKPIEQTKFLTKYVD
FT                 DLFAIVKETEIQNTLKILNTYHKDVQFTIEIENDNKLPFLDACAHRINNQI
FT                 KLNWYKKPIASGRIISYYSKHPRNVIINTAQNLANRIINTSDKIFHEDNKI
FT                 VIKNILSKNDFPLKVIHQIIKNINQKHKHPELQENKTYKSFIYIPRFSERL
FT                 TLSNIYDRDKIQLAYKPTKTMASIFSNMKSKIEIFDKHNIIYKIPCAGNGS
FT                 ENCNKIYIGTTKAKLKTRIAGHKSDIKNNNNSNMPKTALAAHCASERHLPN
FT                 FDEAGVVQQEQHYKKRFTLEMLHIINIPTNIRLNFKTDTENVAHIYRHLLD
FT                 KQKYVG"
XX
SQ   Sequence 2699 BP; 1112 A; 536 C; 405 G; 633 T; 13 other;
     tataaaaacg gaaggcacgc cgtwagcata accatgggat atgctaatgt tawacgtagc        60
     tgcaacaaca atacaaaaac aaccatcaac cagttccagt ctaaaaccag caaaattacm       120
     aagttaacat caaawattaa attcctttta agatktagaa aaattagatt aattcccaga       180
     tttatccaac aaacaacaaa gtacaacagt atatttaata aggaccaaga aattccattt       240
     catattaaac aatcattatt aagaatatcc acaaacttcc accaaaaact actaggcctw       300
     attataaaaa tgaakcacca acaattagca gacgaaacaa aacagttaaa acgagcgaaa       360
     acaacattac agagacaact cagtactgat gacgcgacaa caatatttca gacggtagat       420
     gcawcaacca aaaagctaac aacattaata agagggtcac aacaagaaaa gttcataaaa       480
     ctgcgctctg accgtaacaa cattctcgtc aataacaaca acacaggatg ctttgtcaac       540
     aaaaccgaag cggaattccs tctcaatgta caagctctac tktcaaaggg atcaaagttc       600
     caaagcagaa tttcctctct ttaactggtg caaagcatac caggcaaaga agaacaagag       660
     agcgcaagaa ctaaattgtc tctcctaatc aaagacagta caacaagaac aaaagagagt       720
     gcaattgatc gagcaatttc ggacacagtg ggacaaacta agaaatttct aaatgaaamc       780
     aaggatataa ktattttaaa ttcagacaaa gggaacgtca cagtagccat gaagaaggaa       840
     gattgccgaa tgaaaatgaa aaatatattg gatgacctag ccacatacag gatactacgg       900
     aaggacccca cgtcgmggct ccagacgaaa aacaatttgt tggtggaaaa attatttaat       960
     atggagctga tttcaaggaa cgaaagaaac agactcaaga cgaacacagc gctaccaccg      1020
     agaatttacg gactccccaa aattcacaaa gaggacaccc cactgagacc aatatgttca      1080
     atgatcaatt caccttcgta tcacctttgc aaatatgtat gtgatatatt aaaaaacttg      1140
     accacagatt ctaaatttaa cataaaaagt gcaatagaat ttaaaaataa ggttaatgac      1200
     gcatatataa cagatgacga aaaaatggtg tccttcgatg tagtttcgtt gtttcccagc      1260
     ataccgactg gcttagcact aacagtaata cagtccaaat ggaaagacat acaagaacac      1320
     acaaaaatcc caaaaacatt attcatggac attttaagct tctgcattac agaaaacaga      1380
     tattttaagt gggaaaatga tatatacaca caattgaaag gacttcccat gggatctcct      1440
     gcatcaccaa taatagcaga cattattatg gaggaaattc ttaaaccaat tgaacaaaca      1500
     aaattcctta ccaaatacgt tgatgatctc ttcgctattg taaaggaaac ggaaatacag      1560
     aatacattaa aaatattaaa cacatatcat aaagacgtac aatttacgat tgaaatagaa      1620
     aatgacaaca aacttccctt cctagacgca tgtgcacacc ggatcaacaa ccaaataaaa      1680
     ttaaactggt acaaaaagcc tatcgcctca ggacgaataa ttagctacta ctcaaaacac      1740
     ccacgaaatg ttataataaa cacagcacag aatctagcca accggattat taatacaagt      1800
     gacaaaattt tccacgaaga taataaaata gttataaaaa acattttaag taagaatgat      1860
     tttccactga aggttattca tcaaataatt aaaaatatta accagaaaca caaacatcca      1920
     gaattacaag aaaacaaaac atacaaatcc tttatataca ttcctagatt ctccgaacgc      1980
     cttaccttat caaacattta tgaccgtgac aaaattcaat tagcttataa acctacaaaa      2040
     acaatggcat caatatttag caatatgaaa agcaaaattg aaatattcga taaacacaat      2100
     attatttata aaattccgtg tgctggtaac ggctcagaaa actgcaataa aatatatatt      2160
     ggaacaacta aagccaaact aaaaacaaga atagcgggcc acaaatccga cataaaaaac      2220
     aacaataatt caaatatgcc aaaaacagca cttgcagccc actgtgcgag cgaacgacac      2280
     ttgcccaatt tcgatgaagc gggtgtggta caacaagaac aacattacaa gaaacggttc      2340
     acactagaaa tgctgcacat catcaacata ccgacaaaca ttcgacttaa tttcaagaca      2400
     gacacagaaa acgtcgcaca tatatacaga cacttactgg acaaacaaaa atacgtaggt      2460
     tagttactct cttgactccg cggcagacgc tcgatttttt cgtttttttg tcgcgtaaca      2520
     aaaattgtat gtattttttg taacattagt tttatacgtt gtttataatt tgcgtgttgt      2580
     tgctagcccc tgaagacgga ctccgatgcg ggaccgaaat atattgggaa aaattggaaa      2640
     caaaaactgt gttttattac atggatccat gaccttgagc cagccaaaca aaacattaa       2699
//
ID   Penelope-1_HMM repbase;    DNA;    INV; 5820 BP.
XX
AC   .
XX
DT   12-FEB-2013 (Rel. 19.10, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-1_HMM.
XX
NM   Penelope-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-5820
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2877-2877 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. Both terminal ~235bps are LTRs. A
CC   Kiri-like insertion is excluded.
XX
SQ   Sequence 5820 BP; 1999 A; 853 C; 1108 G; 1855 T; 5 other;
     tgttagagtt tatataagtt acatataatt gtatagacat tattttgtat tcttgtcgag        60
     acttgtcaat atttgtcagt gagtcatatt gttatctacc cgcttaaaag cataattgtc       120
     taaggcttct tgtaaagtgt ttttaatttg gtatggcagt ctagtctgag acgtmgcagt       180
     ggacggwcga ataaaccttt gtactaaatt gtacttttat tctgagcccc tttatatctc       240
     agaagtggta cccgctaaga aaatactcgg ctaatcaaca tcagttacaa tggatacgat       300
     aaataattgt cgtcaaggca taagcacggc cgtccatatg agagaagatt taacacgacc       360
     atcacaggaa gatactcgtg cacatttttc gagacaaagg gcggtacgca gtactgctcg       420
     tagtaaatta cgacattcag tgcggcgccg tcgccaatcc aacgamggca caagtgtaag       480
     tagtgcaagt gatgtcagtt acacgcgatt tactagaagt aagcgacggg gtctaagaag       540
     tcaccattag aagcggaatc gaaggcgtca tcgcagtagc agcagtgaag tttcaacgtc       600
     atcccatttg aggaattgaa gtggccgacg atggcgccat agcagtgaga acattgccaa       660
     cagtgaaaga aagagggtac gtagtaacat tgatgataat ttgcatgata ctcatttact       720
     catacgtgaa atgttgcaat caatgaataa gtcatagaat cgcgatgata aattgccatg       780
     gtaggtaacg ttatattaga atttgaccct atgtcaaaag attaaacaat taatacgtag       840
     atttgtaagg tagaagagtg ctcacgaaat acggttggtc tgatagacag attattcatt       900
     atgctttgcc gaaattattt ggtttggtta aatcatagta cgaagaatta ccttctttat       960
     tatttagttg aacagaatgg aaagaaaaat tattagaatc ttatcctacg gagcccgaac      1020
     aagtgtttag atatttaagt caattgataa atcgtaataa atttttcaca gataaaattc      1080
     taaatttatc agataaattt atcataattt taataataat aagaataggt caacacgagt      1140
     acaaagagag tctgttataa ttgtaatgaa ccaggatatt atactattaa tgtacgaaac      1200
     atattttaag atcttatcta gtatataata tataaaatgt aaaaagaatg taaggaagtc      1260
     taaagcatta agttcaaagt atattattat ttctaaaagt atatgaatat caaatatcaa      1320
     cattggtcgt atttttaaat tcgaaattca aattcaaaaa ttcattcaaa tttcttatag      1380
     aaattacaat aatgtactaa gcaaaagagt caaagtcata ttaaaagatt gatacagttt      1440
     aaagtaataa aaaatgtatt agacatcatt ttataatgac agttgtcagt taattctgtt      1500
     cttgagtgag actaaacgga gtgtcttcta atttcttgtt caagcgagca aagctgcggg      1560
     cggaccgcta gtgtacaata tgtaacaaaa tagatcatct agcggctacg tgccagaaat      1620
     tggtaaatta aagcaataaa taattacaag aatgtattaa aaataaataa agacttacaa      1680
     taataataag tttattttaa atatgaaggt aaataataga ttattggtag gttatgtgga      1740
     tttaggtagt cggtgtamat taatacctga aaatattgtt atcgaacttc atttaaaatg      1800
     gtatsaaaat aatttgccta atttaagagg tctaagcaat aattttattt tactattcgg      1860
     taagactgaa gttaaaatta acatacaaaa tatttgcgaa accattgaag tgttaattgt      1920
     aagtgatgac gttatcagct atcctatatt cgtaggtcat ttattttcgg acaatttggt      1980
     attgttatta ctaaaatgcc aagaggttta cattacattt tacaaaatgt agcagaaaaa      2040
     ttacgtttat tgtccaatag acccgcgtaa acagttggta tagtgaagat tatgtcacat      2100
     aatagatact cggatttgtt ttatgttcac ggttcaaaaa tgtgtgtgtt gacgtttaca      2160
     atagtcagtg tcagtgtgtt gacgcttaca aaaatgtgaa ttctatttaa ggccaatacg      2220
     aacttgaaaa tggtcagggt tcaattttaa tactcaaata tttctctcaa tgatttaaaa      2280
     attaaagaaa gaaaagaatt aaactgagct aagataattg tcgaagaaat acctattaat      2340
     attataaatt cagaagattt agataaagtt aatatagggg aaggtttaag taatgataat      2400
     gtatgatgaa ttcaaaactt gtttgtcgag tggactagaa gagttagggt ttaccgatat      2460
     tattgaattg gacattgagt taactgattt taagcctgtt aaatatcgac cacataagtt      2520
     acgatcagta gttactatta gtagtaaggg taatggttca agatatgtta attgccggtg      2580
     ttattaaaga gtcaaattct tcatatgctc aaattcttca tatgttcaaa ttcttcataa      2640
     gataaaagat tatgtgttga ttatcgtgct cttaataata aaactataaa ataacactat      2700
     tcgttaccgc ttatagataa tcagttagat ttgttagcgg gcaataattt atttgtttta      2760
     ctagatttat tttcgacgtt atcaaaaatt gtattagatc aggttcacga aacacaatgc      2820
     tatcacagaa tttccgatac cgaaaaatgt acacgatatg agaagattta ttgatttggt      2880
     aagttttttt tgagaatgtt cattaaaaac tttgcactta ttgctaaaac attgactgat      2940
     cttttagaca gaatgtctct tggcaatgga ttaatgaaca agaagaatca tttaatatgt      3000
     taaaaggaaa attagtagaa cgactttatt agtgctttat gatcaaaatc ttataactga      3060
     attgcaaaca gagttgataa tttattgtta ccggtagcat actatagtcg aaaggataac      3120
     acttctatac tggttataat taacgctttt acaaaattta ttaatatgtc agctgtgaag      3180
     aataccaaaa cgtctaccac cattaacgta tttaaagaac attttagcta ttttggtaat      3240
     ccactaagac ttagcacgga tagaggatca tgtttttcta gcaatcaatt taaagcgttt      3300
     cataaaagtc gtagtataaa gcatattctt aatacggtgg caacaccgag agaaaatggt      3360
     aaattcaaac gatttaatca aacaatattt taaatatagt ttcaatatct taattataat      3420
     taatgcttag gcgatattca gttaggttta aatacaacta ttcgtaaaac tactcaaaaa      3480
     aaaagttatt attcgcttat aaaatccgta attcatttat gggacaatgt gtacgcgttt      3540
     acaacaagat cccagaaaac gtcagagaat tttctatatc atggtctaaa aaaaattgtg      3600
     aaaagacatt tgtgtgttaa aggttattac caaattaatg atttcataaa tgataacacg      3660
     ccttgggaat gaaatactcg ctccagtctg tttcaaagaa atcattgtca caaataatta      3720
     aatatttgta tttgtttaaa atttcaaaaa aataagtccc gctgagtttc ttgcgccggt      3780
     tcttctcagg tctgagccac taactttagt gaactggtgg taaattattt gacgttcaaa      3840
     aagaataaaa catgtaactt tattttgaat aaaaaatatt tgaatttgaa tcgaatttga      3900
     ataaataatt ggtagcacat aaaacataat taacgaaata tattatgaca ctgagaaacg      3960
     gttgtctgaa aatgcactcg taacggttag ggttgaggtt agtagtcgaa ttatagaaaa      4020
     tcaaataagt ataaaaacat agttgcaatc gataaaataa tcaatggata acttttcaac      4080
     gagatgtttc tagcttcgaa tttgaagaaa acagtaatga cacagagtaa tgagtaccat      4140
     gctaattgtt agttacagat gattacagta gcagactaca gctagtgcca gaagctggca      4200
     cagatagttt ttttagcaga atgcgcagat gtaggctaca gatgtatcag agtcatgatt      4260
     atatgcacag atgacagaga gcagactata atgttgtgag ctgagtggtg agtgacattg      4320
     atggcatgga tatccccagc agattgcagc attcataggc ccgtgattta gtcagtgcag      4380
     agggcagact ataatgttgt gagctgagtg gtgagtgaca ttgatggcat ggatatcccc      4440
     agcagattgc agcattcata ggctcgtgat ttagtcagtg cagagggcag actataatgt      4500
     tgtgagctga gtggtgagtg acattgatgg catggatatc cccagcagat tgcagcattc      4560
     ataggcccgt gatttagtca gtgtagaggg cagactataa tgttgtgagc tgagtggtga      4620
     gtgacattga tgtcatggat atccccagca gattgcagca ttcataggcc cgtgatttag      4680
     tcagtgcgga ggtagaatgt gaattgctat gggttcgctt gtgtggcgga actttgagga      4740
     gatggctctt agctctgcgc cttgtctacc taggatattt aagcggtacg tagatgacac      4800
     ttttacaatt ttacgtatgg acaatattta catattcctg aaccatctca tttcattaat      4860
     aacaatattc aattcacaat agaattacag gcaagtaatt ccttagcttc ccttgttgtg      4920
     tcccaatgac acaataggcc acacaatata taggaaacca cgcacacgaa tagatacctc      4980
     aatggtgaat tgcaccacta ccctacacag ttatctaccg ttggcaaata tttgtttcag      5040
     agagcatctg cgacgctgat cacctagggg actagtttcg ccaggggaag aattcccttc      5100
     atcagaataa gctgccagtt taccgccagc gttgtcagaa gactaacatc cttgaaatca      5160
     caaacctacc ataccagaag gccagataca gtcagctcat tctgcaggag ttcagggcag      5220
     tacgcgagga aattaggaaa tcgtcggcag tagtcaactg acagacaaat gccacctcag      5280
     tctgcccgtg accgcggact tccaaatatg cgcgattggt ccggttaaaa gagcttcatt      5340
     tacaactttg ttttgttttt ttttttgacc atggagtaaa tagtaaacaa ttattaagtg      5400
     tgtgtgatgc taatgaataa aataacgtta acgttaataa taacgactat tgtattatgt      5460
     atgattaatc agataaatta aagtaatact tggtataatg taagttaata tatgcataag      5520
     ttgcttagtt atttaatgtt aatgctgttg cgagaggact cgcctctctt caggaaggcc      5580
     gagctgttag agtttatata agttacatat aattgtatag acattatttt gtattcttgt      5640
     cgagacttgt caatatttgt cagtgagtca tattgttatc tacccgctta aaagcataat      5700
     tgtctaaggc ttcttgtaaa gtgtttttaa tttggtatgg cagtctagtc tgagacgtcg      5760
     cagtggacgg tcgaataaac ctttgtacta aattgtactt ttattctgag cccctttata      5820
//
ID   Penelope-1_LHu repbase;    DNA;    INV; 2139 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_LHu.
XX
NM   Penelope-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-2139
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 480-480 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1440
FT                 /product="Penelope-1_LHu_1p"
FT                 /translation="GNTPRAYGLPKIHKEGYPLRVIVSSINSPLYKIANFL
FT                 HGILANNVPNSKRNIKNSFDLVEKLNGVFLESDHCLASLDVVSLFTNIPVE
FT                 KAIESIKNRWEWIRRYNSIPIEEFLIGINLVLNSTYFSFNKVIYKQIFGTP
FT                 MGSPLSPIIAEFVLQDLENSAIERLPYKLPFYFRYVDDILFTAPENHLDEV
FT                 LETFNSMHSRLQFTLEKGINNHINFLNVKLISENNFIKFDLFHKPTFSGRY
FT                 LSFYSHHPMAHKKGVIIGLFDRVXKLTHPQYWHKNIEEMISLLLINGYPLE
FT                 LIFNSINERLKKFSNNCCNRNKNSNDRTGYFTIPYIKETFDKFTRNMKKYN
FT                 HHLAFSCNNKLNRFIKTGKDIIESMSQCDVVYKVTCHDCEASYVGQTKRKL
FT                 KTRIKEHKSDINKRTGSPSVISCHRLEKNHEMDWENVEILDKEMSYSKRLI
FT                 SEMLHIKRQKTSLNKQNDTELLPNLYLPVLNLFTA"
XX
SQ   Sequence 2139 BP; 779 A; 336 C; 341 G; 679 T; 4 other;
     ggaaacacac ctagagccta cggtttgcca aaaatccaca aagaaggata tcctctcaga        60
     gtaatagtat cttcgattaa tagcccgtta tataagatmg cwaacttttt acatggaatc       120
     cttgcaaaca atgtacctaa ttcgaaaaga aacataaaaa atagttttga tctagttgaa       180
     aagttgaatg gtgttttttt agaatcggat cattgccttg cttctttaga tgttgtttct       240
     ctttttacga acattcctgt tgaaaaggca atagaaagca taaaaaacag atgggaatgg       300
     attagaaggt acaattccat accaatagaa gaatttttaa ttggtatcaa tttagtttta       360
     aattcaacgt attttagttt taataaagta atttacaagc aaatttttgg cactccaatg       420
     ggttctcctc tctctccaat aatagcagaa tttgtgttac aagatttgga aaattcagca       480
     atcgaacgtc taccttacaa attaccgttt tattttaggt atgttgacga catactattt       540
     acggctccag aaaatcattt agacgaagtt ttggagacat tcaactcaat gcatagcagg       600
     ttacaattca cattggaaaa gggaataaat aatcatatca atttcctaaa cgttaaacta       660
     atatcggaaa acaattttat taaatttgat ttgttccaca aacctacttt ttcgggcaga       720
     tatttaagtt tttattcgca tcatcccatg gcacacaaaa aaggtgttat cattggctta       780
     tttgacagag ttktaaagtt aacacaccca caatattggc acaagaacat cgaggaaatg       840
     atttccctac ttttaattaa cggctatcca ttggaattaa tttttaatag tattaacgaa       900
     agacttaaaa aatttagcaa taattgttgt aatagaaaca aaaatagcaa tgatagaacg       960
     ggttatttta cgataccata tataaaagaa acttttgata aattcacacg gaacatgaaa      1020
     aaatacaatc atcatttagc cttttcgtgt aacaataaac ttaataggtt tataaaaaca      1080
     gggaaagaca tcattgaatc catgagccaa tgtgatgtag tatataaggt aacgtgtcat      1140
     gattgcgagg ctagttatgt gggacaaaca aagagaaaat tgaaaactag aattaaagaa      1200
     cacaagtcgg atataaataa aagaacggga tccccttctg tcatttcttg tcatagatta      1260
     gaaaaaaacc atgaaatgga ttgggagaat gtagaaatat tagacaagga aatgtcttat      1320
     agcaaaaggc ttatttccga gatgttgcac ataaaacggc aaaaaacgag tctcaataag      1380
     cagaacgata ctgagttact gccaaacttg tatttgccag ttctcaattt gtttactgct      1440
     taaagatcac tcactctccc accacgaatc tccttcacat acgagttctc taatatatcc      1500
     tctattatat tcaactagtt tgccatgtcc actcaaacga tacggaccwc caaatatcat      1560
     tttaagcaaa ctgactcgtt acaccgaatt tggttttggt tcttagtaat attttttaaa      1620
     ataagaaagt taaatacacg aaaactacac aacatgacgg tactgctatg cattgaggta      1680
     agaatatttt tagtaatttt aacaagtaca atacgagcaa tacaaagata aaggtagaca      1740
     ttggttcatg ctgtttttta gaataattgc aatcaaccac aaagtctcaa gtccttaaga      1800
     gtacatcgcg tatattaata atgcaaaaca cgacatcgtt ttcttcctaa taatttaagg      1860
     attgctgtta ttggaagggg catgactttg aagaaatgtt ttccatctaa acagttttta      1920
     aaagtaacga attgtaagaa gatttttatt gtaatatgtt ccgaattgac aatgttttat      1980
     taatgtattc agaattttat aacgaataac tactgaagat gaccacatcc gaatggtcga      2040
     aacgtttaga attagatctt tataatttgt tataattgtt ataataagtc aataaattaa      2100
     gcacgtaaat ctagctttgg ctctgtagct tgtttttaa                             2139
//
ID   Penelope-1_LMi repbase;    DNA;    INV; 2682 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_LMi.
XX
NM   Penelope-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2682
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3175-3175 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           784..2439
FT                 /product="Penelope-1_LMi_1p"
FT                 /translation="MDPDIVILPADKGNATVVLNKQDYLQKMQCLLSDSAY
FT                 RRISADPTKSVERKTNNLLKKSSLSQETIKSLNSYCAVPPRLYGLPKVHKD
FT                 GCPLRPIVSNIGAPTYRVAKHLAGLLSPLVGRCEHHIKNSVDFLRRLEGLH
FT                 LADSDILVSFDVVSLFTRVPLSDSLQLIETKFGTDLTNLFRHVLTSTYFLF
FT                 NDEYYEQTDGVAMGSPLSPIIANLFMEDFEDRALESAALKPACFFRYVDDT
FT                 FVVWPHGSENLNYFLEHLNSIHPNIRFTMEVEKNGCLPFLDVLVRRKADGT
FT                 LGHAVYRKPTHTDLYLQADSCHHPAQREGVLRTLVHRAHVISDPESLPTEL
FT                 SHLEVTFRQNGYGEGQIKRALRYRPHVQRASDDSTESAPTSVAFLPYVGST
FT                 SNKIGRILRKNNVKCVFRPPSKIKALLGSVKDDLGLRKAGVYRIPCSCGMS
FT                 YVGQTIRTVEDRCIEHKRHTRLQQPNKSAVAEHCLDTGHPMEYNKTEILAC
FT                 TSNYWDCVIKEAIEIKLGDNLMNRDGGFCLNSAWDPALSLVKKQRDKTNPT
FT                 SSVEN"
XX
SQ   Sequence 2682 BP; 666 A; 561 C; 636 G; 819 T; 0 other;
     tctcctggcg aataacaact tcgaaaaact acgggtatgc tgccaggtat caaaatcgac        60
     gtcaaatttt tcgaagctgt tattcgccag gagaaattaa ggaatccatt actctacggg       120
     gaggaaatgt atcgtttttg cggaagtcag ataagcttcg tagcagcagg gtcaggttgc       180
     aatgtgcatg tcgtctttgt tggaatgtcg tgataatagt gttgttccaa cttttgccaa       240
     agttgtgcac atatcaattc tcctgccgct ggtcgcatta aacaacgtgc aggcttagct       300
     cttgtccgcg agaggattca ttacacccgc cgagaattgg attttgtgtc caaggaatta       360
     tttcggcttc atttgtacat tgcctctgaa atttcggaat tttcttggga ctggttggac       420
     ggtgcttcct ggtcacaatc cgattgggaa tttcaaactg taacggcccg gcattcggcg       480
     aagtttgaac ggttccgtag ctcagggtct gcttttacaa ctcgacgttc tgtgattaat       540
     ctcacagaga aaacctttga cgacgcagct ctatccgttc tggggaaagg tttgaatttt       600
     gcaccgacgc ctaaacgttt acctgttgtt gattttatta gttctatcga acaggctgtt       660
     tttaaactac cttctgacat taaagaggag gttaggaggg aagcttgtcg tgtgttgact       720
     agggcacgtc cgcctgtgag taatataaca gcagctgagg cagctgcctt acgttcactt       780
     aggatggatc ctgatattgt tattttacct gcggacaagg gaaatgctac tgttgtttta       840
     aacaagcagg attatcttca aaaaatgcag tgtttacttt ctgattcagc atatcgcagg       900
     atttctgctg accctacaaa aagtgttgag aggaagacca ataacctcct taagaaaagt       960
     tctttgtcac aggaaactat caagagtctt aattcgtatt gtgctgtacc tcctagatta      1020
     tatggccttc ctaaggtcca taaagatggg tgccctctta ggcctattgt gtcaaacatt      1080
     ggtgctccca catatcgtgt ggcaaaacat cttgctggtt tgttgagccc actggtaggc      1140
     cgttgtgaac accacattaa gaactcggtg gatttcctac gtcgattgga gggtttgcac      1200
     ttggctgact cggatatttt agttagtttt gatgtggttt ctcttttcac tcgcgttcct      1260
     ctgtctgatt cgttgcaact aattgagacg aagtttggta ctgatttaac gaatttattt      1320
     cgacatgttt tgacttccac ctacttttta ttcaatgacg agtactatga gcagacagat      1380
     ggagttgcga tgggaagccc tttgtcacct atcattgcta atttattcat ggaggacttt      1440
     gaagatcgtg cactggagtc agcggcgttg aaacctgctt gttttttcag atatgtagac      1500
     gacacttttg ttgtttggcc tcatggtagt gagaacttga attatttttt ggaacatcta      1560
     aattcaatcc accccaacat ccgtttcaca atggaagtgg aaaagaatgg ttgccttccc      1620
     ttccttgatg tgttggtcag gagaaaggca gatggtacgt tgggacatgc tgtttatagg      1680
     aagccaacgc atactgattt gtatttgcaa gctgatagtt gtcaccaccc agctcaacgt      1740
     gaaggggttc ttcgaacctt agtgcatagg gctcacgtca tttctgaccc ggaaagtttg      1800
     cccactgagc tgtcccatct ggaggtaact tttcgacaga atggctatgg tgaagggcag      1860
     attaaaagag cgttgcgcta tcgaccacat gtgcaacggg ctagtgatga tagcacagag      1920
     tcggcaccca cgtcagtggc ctttctgcca tacgttggca gcacttccaa caagattggc      1980
     cgcattttgc gtaaaaacaa tgtaaaatgt gtgtttcgtc caccttctaa aattaaggca      2040
     ctgttgggat ccgttaagga tgatctcggt ttgcgcaagg cgggtgtcta ccgtatccca      2100
     tgtagctgtg gcatgtcata tgttggtcaa actattagga ctgttgagga ccgttgtatt      2160
     gagcataaac gtcacacacg tttacaacag ccaaacaaat ctgctgtggc cgaacactgt      2220
     cttgacacag gtcaccctat ggaatacaac aaaacggaaa ttctggcatg cacttccaac      2280
     tactgggact gtgttatcaa ggaagcgata gaaataaaac taggtgacaa ccttatgaat      2340
     agggatggag gcttctgctt aaattccgct tgggatcctg ctctctcact tgtcaaaaaa      2400
     cagagggaca aaactaatcc gacctcatcc gtcgagaact gatgtttatt atcgatattc      2460
     tgaccggttt catctttggt cgtgtcggcg ctgtgtgctt gcttgctcgg tgtgtgttgt      2520
     ctttcctgtt tactcattga aaaccgaggt tttaaagatc gttgcacatt gcttcctcac      2580
     tgcagtttcg ccttgaaaat ggcagggtgg tctcctgccg aaatatcggc cgtcgtcgat      2640
     tttggtacct ggcagcatac ccgtaagttt ttcgaagttg tt                         2682
//
ID   Penelope-1_NVi repbase;    DNA;    INV; 2022 BP.
XX
AC   .
XX
DT   01-JUL-2009 (Rel. 14.07, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type element: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_NVi.
XX
NM   Penelope-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2022
RA   Bao W. and Jurka J.;
RT   "Penelope-type element from Nasonia parasitic wasp.";
RL   Repbase Reports 9(7), 1550-1550 (2009).
XX
DR   [1] (Consensus)
XX
CC   The both ends may be incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(54..1466,1450..2022)
FT                 /product="Penelope-1_NVi_1p"
FT                 /translation="NSQKSCADNKKWVINLLNTELPSEVIDVVSMGHNFNK
FT                 NIKLNKNDIITTIKNFECSTYALDAEARMLLRDILIKNIETACNNVLPYNR
FT                 FNKDFCQKVALTKEFCFNNPSLFFTRADKGSITVCLDYEDYKEKMFNLLSD
FT                 TKTYKTVKRNPLVSLQKNVYNILSDLNDRDSLDLKYDKFKLTQTNTVLPRA
FT                 YGLPKIHKKDVPLRPIISTVNSPTHFLANIIDKTLRGFLKNPASHIDNSFD
FT                 LIKKLTNIIIPQGYILVSLDVISLFTNIPLELVLCSLDKRFQKIQSHSKIP
FT                 FECIIDIVKFLFDNTYFLFDNIIYKQIFGTPMGSPISPLFADLVMEDLETT
FT                 VLMELKNNHDCIPLFYFRYVDDTILCVRENELDLILNKFNSYNRYLQFTHE
FT                 LQNNNMIPFLDITLTIKNNSIITNWYQKPTNTNRVLNFNSNHTIQLKRNII
FT                 YNLVDRALLLSHKQFHEENLVMVKKILWLKKSENSYPDKFIDSCIRYRVRY
FT                 HTFGNSSIRNKVPTVRNVMSIPFHEKLFFTCKSSFKKYGFTIVPRMSNKLS
FT                 DVIKLGKDKLDKWCETNVVYEISCNDCNATYVGQTKRNLKRRIDEHKKTSL
FT                 DKILPIPTHINNFSHSFDFENVKILDKEPNNFKRLISESIFININNNNINK
FT                 QEDFNMISKQYNK"
XX
SQ   Sequence 2022 BP; 778 A; 286 C; 280 G; 678 T; 0 other;
     ttccaattag tgaattctct cgacaagaaa tataataatc taattgatag taaaattccc        60
     aaaaatcgtg tgctgacaac aaaaaatggg ttataaatct gttgaatact gaacttcctt       120
     ctgaagttat tgatgttgta tctatgggtc acaatttcaa caaaaatatt aaactcaata       180
     aaaatgatat tattacaact atcaaaaact ttgaatgtag tacgtatgcg ctagatgctg       240
     aagccagaat gttacttaga gatatactta ttaaaaatat tgaaacagcg tgcaataatg       300
     ttttaccata taatagattc aataaggatt tttgccaaaa agtagcacta actaaagaat       360
     tttgttttaa taatccgtcc ttatttttta ctcgagcgga taaaggtagt ataacggtgt       420
     gtctggatta cgaagattat aaagaaaaaa tgttcaactt gctgagtgat acaaaaacgt       480
     acaaaactgt aaaaaggaat cctcttgtat ctctgcaaaa aaacgtatat aatattttgt       540
     ccgatttaaa cgatagagac agcttagatt taaaatatga taaatttaaa ctaacacaaa       600
     caaatactgt tctacccaga gcatatggac tgccaaagat tcacaaaaaa gatgttcctc       660
     tcagacctat tatttcaaca gttaatagtc ctacacactt cttagctaac atcattgata       720
     aaactcttag aggtttttta aaaaatccgg cttcacacat tgacaacagc tttgatctaa       780
     taaaaaaatt aactaatata attattcctc aaggatatat cctagtttcc ctcgatgtga       840
     tttctttatt tacaaatata cctttagagt tagttttatg cagtttagat aaacgctttc       900
     aaaaaattca aagtcattca aaaattccgt ttgagtgcat aattgatata gtgaaattct       960
     tgtttgataa cacatatttt ttgtttgaca atataattta taaacagatc tttggcacac      1020
     ccatgggctc ccctatctca ccgttgtttg cagatttagt tatggaggat ttagaaacta      1080
     ctgtactcat ggaactaaaa aataatcatg actgcatacc tttgttttat tttagatatg      1140
     ttgacgatac aattttatgc gtgagagaga atgagttaga tctaatctta aacaaattta      1200
     atagttataa tagatactta caatttacac atgagttaca aaataataac atgattcctt      1260
     ttttagatat cacattaaca ataaaaaaca atagtattat tacaaattgg tatcaaaaac      1320
     ctacaaacac taatagagtt ttaaatttta attcaaatca tacaatccaa ttaaaacgta      1380
     acattattta caatctagta gatagagctc ttcttctctc tcataaacaa ttccatgaag      1440
     aaaatttagt tatggttaaa aaaatctgaa aatagttatc cggataaatt tattgatagt      1500
     tgtattcgtt atcgtgtgag atatcacact tttggcaatt caagtattag aaataaggta      1560
     cctactgtta gaaatgtcat gtcgattccg tttcatgaaa aactattttt tacatgtaag      1620
     tcttccttta aaaaatatgg ctttacaatt gtacctcgta tgtcgaacaa attaagtgat      1680
     gttattaagt taggaaagga taagctggat aaatggtgtg agactaatgt tgtgtatgag      1740
     atttcgtgca atgattgtaa tgctacttat gtaggccaga ctaagagaaa tttaaaaagg      1800
     agaatagatg agcataaaaa aacgtcttta gataaaatat tacccatccc cacgcatata      1860
     aataattttt cacatagttt tgattttgaa aatgtcaaaa ttttagataa agaaccaaat      1920
     aattttaaaa gactgatttc agaaagtatt tttattaata ttaataacaa taatatcaat      1980
     aaacaagaag attttaacat gattagtaaa caatataaca aa                         2022
//
ID   Penelope-1_PBa repbase;    DNA;    INV; 3617 BP.
XX
AC   .
XX
DT   24-SEP-2011 (Rel. 19.03, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3617
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 751-751 (2014).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1934..3184
FT                 /product="Penelope-1_PBa_1p"
FT                 /translation="MQLNDDHTLVSFDAVSLFTNVPIDLSIDSIAKRWGDI
FT                 SKNCDIPKDEXLGAVSFVLNSIFFTFDNVIYKQTFGTPMGSPLSPIIADLV
FT                 LRDLEESVLEDVRAHLPFFYRYVDDIAMAIPSRLIDEILGRFNSYHPRLQF
FT                 TAEVGGSELNFLDLTLKVVNKNVEIDWFHKPTFSRRYLNFHSQHPLAQKRG
FT                 TIAGLVDRAFLLSHPKYHQKNLNLVITTLLMNDYPLNFIFDNIHSRLKTLF
FT                 RREDRSRMSNATAQSQGTKWFTLPFVPEIATKLKKIVDDFNAKPAYFSMNK
FT                 LRGMIRVHKDALPAHSKRNVVYKICCGSCDACYVGQTMRQLKTRLHEHQSH
FT                 IRRNTNTHSVITEHRLDCDHEFDWNGVKVLDCERNLQKRLISEMLFIKRQN
FT                 NCLNSQSDTEFLHHAYVSVLSRL"
XX
SQ   Sequence 3617 BP; 1057 A; 758 C; 749 G; 1050 T; 3 other;
     tagtaaaagg gcaaatgaga atcagcgctg tttacggtgc gcaatttaca ttctttatta        60
     caanttaaaa atatataaca tacgtttcga ctctagtttg agtcatcctc agtgtataca       120
     aaaataaaaa taaaaataca aaaataaaga taagataccg cgttcatccg acgtgctcac       180
     taacgttaat ttcgttaact cattgaatta tgatcgtcat ccttaaagag ataggacagt       240
     ctttaagggt tgtcgattat cggatggaca cggctcacac aaaccgaaca aagcacgcgc       300
     aggagtgcgg cgcggttcgc accgagcagc acaccaacaa cgcgtccgca cgcctcgagc       360
     tccaggcagt gactgaacgc ggtgactcta caagtcaaca acttgtcatc aaaacaaagc       420
     cgaggttaca gcctgctcaa gacagaaacg tatgcgtggt gcaagaattc agtatcagac       480
     tgtgaattca aacaattatt ctgtctctta ataaaaagca tctctgagat cagccgtttc       540
     tgcaaattac gttcacagtc taatactttc acaccgttcc agtcaaattc atgatcgtaa       600
     tccaatctat gttcggtaat gactgaatgt gtgttcctac gtatatgact ctggtgttca       660
     tgcagtctcg tttttaattg tctcattgtt tgtccgacat agcacgcatc gcagctgccg       720
     cagcagatct tgtacactac attccttttg gaatgtgctg gtagagcgtc cttatgaacc       780
     ctgatcatgc ctctcaactt attcatactg aagtacgcgg gttttgcgtt aaaatcatcg       840
     acaatttttt tgagtttagt cgcaatttcc ggaacaaagg taaagtgaac cattttgttc       900
     cttgtgattg cgctgttgca tttgacattc ttgatctatc ttctcgcctg aataaagttt       960
     ttagtctcga atggatatta tcaaagataa agttgagagg gtaatcattc attaacagag      1020
     tcgtaattac taaattcaag tttttttggt ggtatttcgg gtgagacaat aagaacgctc      1080
     tgtcgacgag tccagcaata gtgcctcttt tttgggcgag agggtgctgg gagtgaaaat      1140
     tgaggtacct tcccgagaat gtgggtttat gaaaccaatc aatctcgacg ttcttattaa      1200
     caacttttaa ggtcaaatcg agaaaattca actcgctccc ccccacctca gcagtaaatt      1260
     gcaatctagg gtggtacgag ttgaaccttc caagaatctc atcaatcaat cgggaaggaa      1320
     tggccattgc aatgtcatca acatatctat aaaaaaatgg taaatgcgcc ctaacatcct      1380
     cgagcacgct ctcctccaaa tctcttaata ctaaatcggc tatgatcgga gacaatgggg      1440
     aaccatgggg aacccatggg tgttccaaag gtttgcttat agattacatt gtcaaacgta      1500
     aaaaagatag aatttaggac aaacgagact gcacctaaaa attcgtcctt agggatgtcg      1560
     caattcttcg agatgtctcc ccagcgctta gcaatactgt cgattgatag gtcgatagga      1620
     acattggtga acaaagagac cgcatcgaaa gaaacaagtg tgtggtcgtc agtcaattgt      1680
     atgccagaca actcgttagc aagtttaaaa ctattttcta catgtgttga aggctttggg      1740
     atacttcttg acaggagttt acgggctccc taaaatacat aaacggggat gccccctccg      1800
     aataattgtc tcgtcgattg anagtcctct ttacaacttg gcatccttct tgaacaaact      1860
     cctgtcaaga agtatcccaa agccttcaac acatgtagaa aatagtttta aacttgccaa      1920
     cgagttgtct ggcatgcaat tgaatgacga ccacacactt gtgtctttcg atgcggtctc      1980
     tttgttcacc aatgttccta tcgacctatc aatcgacagt attgcaaagc gctggggaga      2040
     catctcgaag aattgcgaca tccctaagga cgaantttta ggtgcagtct cgtttgtcct      2100
     aaattctatc ttttttacgt ttgacaatgt aatctataag caaacctttg gaacacccat      2160
     gggttcccca ttgtctccga tcatagccga tttagtatta agagatttgg aggagagcgt      2220
     gcttgaggat gttagggcgc atttgccttt tttttataga tatgttgatg acattgcaat      2280
     ggccattcct tcccgattga ttgatgagat tcttggaagg ttcaactcgt accaccctag      2340
     attgcaattc actgctgagg tgggggggag cgagttgaat tttctcgatt tgaccttaaa      2400
     agttgttaat aagaacgtcg agattgattg gtttcataaa cccacattct cgagaaggta      2460
     cctcaatttt cactcccagc accctctcgc ccaaaaaaga ggcactattg ctggactcgt      2520
     cgacagagcg ttcttattgt ctcacccgaa ataccaccaa aaaaacttga atttagtaat      2580
     tacgactttg ttaatgaatg attaccctct caactttatc tttgataata tccattcgag      2640
     actaaaaacg ttattcaggc gagaagatag atcaagaatg tcaaatgcaa cagcgcaatc      2700
     acaaggaaca aaatggttca ctttaccctt tgttccggaa attgcgacta aactcaaaaa      2760
     aattgtcgat gattttaacg caaaacccgc gtacttcagt atgaataagt tgagaggcat      2820
     gatcagggtt cataaggacg ctctaccagc acattccaaa aggaatgtag tgtacaagat      2880
     ctgctgcggc agctgcgatg cgtgctatgt cggacaaaca atgagacaat taaaaacgag      2940
     actgcatgaa caccagagtc atatacgtag gaacacgaac acacattcag tcattaccga      3000
     acatagattg gattgcgatc atgaatttga ctggaacggt gtgaaagtat tagactgtga      3060
     acgtaatttg cagaaacggc tgatctcaga gatgcttttt attaagagac agaataattg      3120
     tttgaattca cagtctgata ctgaattctt gcaccacgca tacgtttctg tcttgagcag      3180
     gctgtaacct cggctttgtt ttgatgacaa gttgttgact cgtagagtca ccgcgttcag      3240
     tcactgcctg gagctcgagg cgtgcggacg cgttgttggt gtgctgctcg gtgcgaaccg      3300
     cgccgcactc ctgcgcgtgc tttgttcggt ttgtgtgagc cgtgtccatc cgataatcga      3360
     caacccttaa agactgtcct atctctttaa ggatgacgat catataattc gatggtcaac      3420
     gaaattaacg ttagtgagca cgtcggatga gcacggcatc ttatctttat ttttgtatct      3480
     ttatttattt tcatttttgt atacactgag gatgactcaa actagagtcg aaacgtatgt      3540
     tatatatttt taaattgtaa taaagaatgt aaattgcgca ccgtaaacag cgctgattct      3600
     catttgccct tttacta                                                     3617
//
ID   Penelope-1_SIn repbase;    DNA;    INV; 4522 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_SIn.
XX
NM   Penelope-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4522
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 485-485 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. ~1080bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1928..3688
FT                 /product="Penelope-1_SIn_1p"
FT                 /translation="MLPQQKNKVTDRLNFLMKSTTIFMRNNPGIIFTKADK
FT                 GNITVALDSNTYKQEISRMLEDQDTYVHIKKDPTNTLIKNARDLLTKWKKR
FT                 SYITEAKYKKVYCSEGNLPRAYGLPKVHKPGVPFRLIISSIDSPLYGLATF
FT                 LHELISKNIPEAPSRVDNSFQLVQKLRGECLDPDCILISLDVVSLFTNIPT
FT                 ELALESISNRWEHLMNACSIPKEEFLQAVRLIMDSTYFSFDNRFYKQKFGT
FT                 PMGSPLLPIIADLVMQDLEAKALEKIGIRLPFYFRYVDDIVMAVPNNLVDL
FT                 TLTTFNSFHPRMQFTLERGGDRIDFLDITIIKDNNKLMFDWFHKPTYSGRY
FT                 LNFLSAHPLSQKRGTVMGMVDRAFLLSDAKFHQKNIELIVKTLLINDYPAE
FT                 FIFETINNRLKSLIHKSTLRQTVNDIGINTTSERARWFLLPYIPTISDKFK
FT                 TITNSLNVKLAFFSLNKLSRVIKVQKDVLPINLKKNVVYKIACKDCEASYV
FT                 GQTSRKLKTRINEHRNHINWNTHSHSVITEHRLICNHEFDWENIKILDNER
FT                 YLGRRLISEMLHIHLQDKSLNLQTDTEYLHHAYLSLLSKL"
XX
SQ   Sequence 4522 BP; 1438 A; 852 C; 815 G; 1417 T; 0 other;
     tgacacttca ctatataatt gtcaaatgat tattttagat gtcgaaaaat tattttagtt        60
     gcgactgtat gtactcgtgg atccccattc gagctgatga cgactaatga agcttgagat       120
     aagttttgtc cgtagaaatt aatttctctt gacgaagtaa gcactcaaac gctactcgcc       180
     tcacaccaac acgtgctcac ggtttcgagt ccgaatgcgt actaactgtc cggaacatca       240
     cgtcttacct gaacgttacg cagaaggtca ggcggttgag aataaacaac ggcaaattca       300
     aatgcataag taccaaaaat atatagaata aattgacggt gagtcgaata ttacaaaaaa       360
     aaattagtta accttgtatc attttgacgg attaaatcga ttataattta ctcaataacg       420
     agagatacgc atgatgcaaa cattcggtgt tcgtttgtaa gttgagactt ttattttgta       480
     aatgaatatg tagcatttcg gaaatcaacc gcctgcccaa gtagcgctca ttatctaaga       540
     ttttgatgtt ctcccaatca aattcgtgat tacaaataag tctgtgttct gtaatgacag       600
     agtgactgtg cgtgttccaa ttaatgtggt tgcgatgctc attaattctt gttttcaatt       660
     tcctgctggt ttggcccaca tatgacgcct cgcagtcttt acatgcaatt ttatacacga       720
     catttttctt taaattgatc gggagaacat ccttctgtac tttgataacc ctgctcaatt       780
     tattgagact aaaaaatgcc aattttacat ttaaactatt tgtaatagtc ttaaatttat       840
     ctgaaattgt aggaatatat ggcgacaaaa accaccgcgc tctttcactt gtagtgttaa       900
     tgccgatatc attgactgtc tgtcttagcg tgcttttatg aataagggat tttaggcggc       960
     tattgattgt ttcgaaaata aattcagcag gatagtcatt aattaacaag gttttaacaa      1020
     taagctcaat gttcttttga tgaaatttgg cgtccagata ataaaaatgc cctgtcaact      1080
     tcatatttac gacttttggt attgtcgccg ttaacttcat gaagcttttg ataaaacacc      1140
     ataagaatgt cattaagaat aagattctta agagcgtgca ttaggaataa tttaactcca      1200
     ccacatttgt attttattgt gaaccgtagg ctcaattttt ttcacttttg gtcggtacac      1260
     aaatggaatt acttaagtaa tcaatttatc attagaattc tgaaaactga gctaaatgac      1320
     gcttttagat ctgtcaacca ttcccaacaa attttctatc tttgtaggca aatctcgcga      1380
     cacgttccag ctaatatttg tcaagccttt ctcaacagac aggaggttac tttccatttc      1440
     taacttaatc aagaacataa aaagttggac gagaagctga attggttgat cctcaagact      1500
     aggaaacgcc ttgttgatag aatcaaacca gtcaattact actattctca caagaacagg      1560
     gacatttcgg cttccgaaac gacgttgaat gacagtgtag aaccagattt ctcattacgg      1620
     ccaactaaca attcttcctc acaggtggtt catgttgacc caaaagcctt tcttaaatca      1680
     atgaatgact cctccctttc aaatatcagg gaaaaatggt tcattaacct atcagcagcc      1740
     cagattccga aagaaataca aattctttta caattaggag acaacttttc cctaccgttg      1800
     gtcgacagaa gaaaagcaat ttttgaatac ataaaaaata ttgagaataa cttgtacaag      1860
     ttgagaccag atcaacattt gaacgtcaga gatatctttc gataccaatt atcaacaata      1920
     ttctttcatg ttgccacagc aaaaaaataa agtcactgac agactgaact tcttgatgaa      1980
     atctactacg atatttatgc gaaataatcc aggaataatt ttcacaaagg cggacaaagg      2040
     caacatcacg gtagctttag acagtaatac ttataaacaa gaaatatcgc ggatgcttga      2100
     agatcaggac acttacgtgc atattaagaa agacccgacc aacactttga taaagaacgc      2160
     gcgggatttg ctgacgaagt ggaagaaacg cagttatatc acggaggcca aatataagaa      2220
     agtgtactgt agcgagggca acctcccgag ggcgtatggt cttcctaagg tccacaaacc      2280
     gggagttcct ttcaggttaa ttatttcatc aattgatagc cccctttacg ggctggccac      2340
     ctttttgcat gaacttattt caaaaaacat tcctgaagct ccaagtagag tagacaatag      2400
     ttttcaactg gttcaaaaac taaggggtga atgcttggat ccagactgca ttctcatttc      2460
     tttagatgtt gtttccttgt ttaccaacat cccaacagag ttagcattag aaagcatctc      2520
     taacaggtgg gagcacctta tgaatgcttg cagcattccg aaggaggaat ttttgcaggc      2580
     tgtcaggctt attatggact ccacatattt tagttttgat aacaggttct acaaacaaaa      2640
     atttggcacc cccatgggtt ctccactttt acctataatc gctgacctcg tcatgcaaga      2700
     tttggaggct aaggctcttg aaaaaatcgg aattcgtttg ccattttact tcagatatgt      2760
     ggatgatata gttatggcag ttccaaataa tttagttgac ctcacattaa cgacatttaa      2820
     ctcgttccac ccaagaatgc agtttacgtt ggagagaggg ggcgatagga tagatttttt      2880
     ggacatcact atcattaaag acaacaataa gttgatgttc gattggtttc acaagcccac      2940
     ttattcgggc cgatacttaa attttctttc ggctcaccct ttatcacaaa aaagagggac      3000
     tgtcatggga atggttgaca gggcattttt attatctgac gccaaatttc atcaaaagaa      3060
     tattgagctt attgttaaaa ccttgttaat taatgactac cctgctgaat ttattttcga      3120
     aacaatcaat aaccgtctaa aatcccttat tcataaaagc acactaagac agacagtcaa      3180
     tgatatcggc attaacacta caagtgaaag agcgcggtgg tttttgttgc catatattcc      3240
     tacaatttca gataaattta agactattac aaatagttta aatgtaaaat tggcattttt      3300
     tagtctcaat aaattgagca gggttatcaa agtacagaag gatgttctcc cgatcaattt      3360
     aaagaaaaat gtcgtgtata aaattgcatg taaagactgc gaggcgtcat atgtgggcca      3420
     aaccagcagg aaattgaaaa caagaattaa tgagcatcgc aaccacatta attggaacac      3480
     gcacagtcac tctgtcatta cagaacacag acttatttgt aatcacgaat ttgattggga      3540
     gaacatcaaa atcttagata atgagcgcta cttgggcagg cggttgattt ccgaaatgct      3600
     acatattcat ttacaagata aaagtctcaa cttacaaacg gacaccgaat atttgcatca      3660
     tgcgtatctc tcgttattga gtaaattata atcgatttaa tccgtcaaaa tgatacaagg      3720
     ttaactaatt tttttgtaat attcgactca ccgtcaattt attctatata tttttggtac      3780
     ttatgcattt gaatttgccg ttgtttattt tcaaccgcct gaccttctgc gtaacgttca      3840
     ggtaagacgt aatgttccgg acagttagta cgcattcgga ctcgaaaccg tgagcacgtg      3900
     ttggtgtgaa acgagtaacg tttgagtgct tacttcgtca agagaaatta atttctacag      3960
     acgaaactta tctcaagctt cattagtcgt catcagctcg aatggggatc cacgagtaca      4020
     tacagtcgca actaaaataa tttttcgaca tctaaaataa tcatttgaca attatatagt      4080
     gaagtgtcac ttcttgcgac acgacgacga gaaaatatag tctcaattag aataattttt      4140
     cgagattcaa aataattata cgacagttat acagttaagt gtcatctctt gcgatacttt      4200
     cacggttaaa aatgccacca cggatttgtc aaaccgttgg cgacttggat gcttcccgtt      4260
     ttcgatgact gatgacggct tctatttcta ttgcctgtac tattttttgt tgcgctgaag      4320
     atgactccaa agcgagtcga aacgttcgtt ttgtaatttt gaattgaata aatgattcaa      4380
     tatcgatact tgtgattgcg ctctttgacc cgcgctgact ctcattagcc tattttccac      4440
     tcattaattg tatttaaatt ttgagagtcc ggaactaatt aattgtttaa tatatatata      4500
     tgtttataca gtgtgtctga ca                                               4522
//
ID   Penelope-1_TCas repbase;    DNA;    INV; 1627 BP.
XX
AC   .
XX
DT   08-MAR-2012 (Rel. 24.09, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 5)
XX
DE   Penelope-type retrotransposon: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-1_TCas.
XX
NM   Penelope-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1627
RA   Jurka J.;
RT   "Penelope-type retrotransposons from the red flour beetle
RT   genome.";
RL   Repbase Reports 19(9), 1802-1802 (2019).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..1457
FT                 /product="Penelope-1_TCas_1p"
FT                 /translation="TDESNNLPLQRPSFSVKNSLEFINKVKDITLHEDELL
FT                 VSFDVSSLFPSVPIPQTLTYLKDLEQQVINEYIQLTELCMKQNIFQFSGKF
FT                 FEQQEGTAMGNSLSPFLADLFMSRFEKDLENELEYFPRVWLRYVDDIFAIF
FT                 DLSKCTIEEFIKILNNRFKSIKFTCEKEVDGXLPFLDTLVIRANNRLEFDI
FT                 YRKDTSTLRYITADSHHCPQHKMASFNFLIHRLINFPLNNARFEKELKIIK
FT                 DAARCNGFETRTVDKIVRKVKYRYMIKQSTTFTNTPEKTNFITLPYTPSVT
FT                 RGLSRIFKNLDLQVVYNSGTSLKSFLGSPKDKIGFLEKSGIYEINCKDCEQ
FT                 KYIGQTRRSINIRFKEHLAHLKFNRFEKSSVAQHIFEKDHRIDSTNLKILR
FT                 VVNNCKFLDAFESLEIFKNRNRLMNSDNGPIPFSPLYSLVGGRKSESRQN"
XX
SQ   Sequence 1627 BP; 564 A; 264 C; 273 G; 523 T; 3 other;
     ttgcatgttt ccatcccgat tgtccctaaa ctttactgtc tccaaaaatt cacaaacctg        60
     gaaagtcagt ccgtccaatc gtttcagcga ttgacgctac nacttccaag gtttnaaaat       120
     ggtgaaccga cgaatctaat aacttaccac ttcagcgacc tagtttttca gttaaaaatt       180
     ctttagaatt tattaataaa gtcaaggata tcacattgca tgaagatgag ttattagttt       240
     catttgatgt aagctctctt tttccaagtg ttccaattcc acagacttta acttacttaa       300
     aagatttgga acaacaagtt ataaacgaat atattcaact cacagaactt tgcatgaagc       360
     aaaacatttt tcaattttcc gggaagtttt tcgaacagca agaaggtacg gcaatgggta       420
     actcattatc tcctttctta gctgaccttt tcatgagccg atttgaaaag gatttagaaa       480
     atgagcttga atattttcca agagtttggc taaggtatgt ggatgacatt tttgctattt       540
     ttgatcttag taaatgtaca atagaagaat tcatcaaaat tctaaacaac aggtttaaaa       600
     gtattaaatt cacttgcgaa aaagaagtag acggaangtt accatttcta gatacattag       660
     ttattagagc taacaataga ttagagtttg atatttatag aaaagatact agtacacttc       720
     gctacatcac tgctgattca catcattgtc ctcaacataa aatggctagt tttaattttt       780
     tgattcacag gctcattaat tttcccttga ataacgcaag gtttgaaaag gagctcaaaa       840
     ttattaaaga tgcagcaagg tgtaatggtt ttgagacaag aacagttgac aaaattgttc       900
     gaaaagttaa atatagatac atgattaaac aatccacgac ttttacaaac acacccgaga       960
     agacaaattt tataacttta ccttatactc cctcagtcac aagaggtttg agtagaattt      1020
     tcaaaaatct tgacttgcaa gttgtttaca actcaggcac aagtctcaag agttttctcg      1080
     gaagtccaaa agataaaatt ggatttttgg aaaaatcggg gatttatgaa attaattgta      1140
     aagattgtga acaaaaatat attgggcaga cacgtcgatc aatcaacatt agatttaaag      1200
     aacatttagc acatttaaaa ttcaacagat ttgaaaaatc aagtgttgcc caacatattt      1260
     ttgaaaaaga ccatagaatt gatagcacta acttaaaaat tcttagagta gttaataatt      1320
     gtaaatttct tgacgctttc gagagtcttg aaatttttaa gaatagaaat aggcttatga      1380
     attcagacaa cggccccatc cctttttctc ccctctactc attagtcggg ggtaggaaaa      1440
     gtgaaagtcg gcaaaattag tatataaggc agaacattgt aagaattagt ttagtttata      1500
     ttctcacctg aggatgacca ctttgtggtt gaaacgcgta gtgtttttaa ataaaggttt      1560
     ggtgtgtcgg gttttttaaa ctttgtttta tttattttcc acgccaagga aatccaacaa      1620
     gaagtac                                                                1627
//
ID   Penelope-1_TrVa repbase;    DNA;    INV; 4875 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-1_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4875
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 623-623 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. This family is inserted in (TA)n
CC   microsatellites. It includes terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           2696..4672
FT                 /product="Penelope-1_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MRVLCLGPKFCIPFFKNSLEKSPFRAVPLEKIIVGIE
FT                 SKIRFEPTLVDTVRDRVCHAIKTYTDLVKRVGGHENINSSTINLFKECFYT
FT                 RTLKKDIIDTFHFIKNNPQIKVINGDKTNKTVIVNSVDYREKMRVLLDDAS
FT                 TYKQIRHSLIPAHIAKNNFLVKKWFDQDFISKNLFENLKVSGAGVSRIYGL
FT                 IKLHKENFPLRPIVSSIGSPFYALSKFFTTVLSNIVGDTDCHVANSFEFFE
FT                 SVNNQEIPDGYKLISLDVTSMYTNISSDLALECVSRRWDEIGQHCSVPKDQ
FT                 FLYALKVCLESTVFQFEDKFFHQIRGLAMGGSVSAVLANIVMEDFELEILG
FT                 TISFLILFYKRYVDDLFLVVHEDTVVPILHFFNSKNPSIQFTLEEEVNQSI
FT                 NFLDMTVSRVNNVLKCKWYQKPSSSGRLLNFLSVQPFIYKRNVVTNLAQRI
FT                 FRLSDRDFTQTTANLGKRILMENCYPAHLINREFSKVSEKNYHEKAPSRNK
FT                 VDFSKLISLPYVPFLSERLSAILKSFGFPVVHKQYNNLGFLMSQLKSERET
FT                 EQMAEVVYHLKCQDCEIGYIGQTKQLLKKRLNGHKYDKNEKTALHHHENTL
FT                 HHHFDFNSVRVLATEKNCFARSMLEMIHILRQKNHVCNSRADVNGLSGAYH
FT                 QFFLSEEVGD"
XX
SQ   Sequence 4875 BP; 1517 A; 918 C; 918 G; 1520 T; 2 other;
     gaaaaacaac ttaaattggg ataaaggctg gaacaaatta aaatttggga cgtttcgggc        60
     caattaacag accctttttc aaccaaataa aaawataaaa acacacaaaa acaaatacaa       120
     gtgagccgcc gctgtaattg caaggcaagg actggcgaaa cggtaaacag ttcaaacaaa       180
     acacaggtgc aaagattacc taatcaccaa cctcctcaga gaggaaaaac tggtgataag       240
     caccgctgag accgttgaca tccgcgcgcg aattacacac gtgattcttt tggcgcaaaa       300
     tatgaatcat ctcgagcata ctgcgggcaa agcagttctt ttcggtggct aaaacacgaa       360
     cgctgttaaa atcaaaatga tggtggagtg tgttttcatg gtgatgcaac gcggtcttct       420
     catttttatc atatttatgc ccgttgagtc tctttttaag aagttgtttt gtctgaccaa       480
     tataacctat ttcacaatcc tggcacttaa gatggtaaac aacctccgcc atttgctcag       540
     tctctctttc tgattttaac tgagacataa gaaatcctaa attattatac tgtttgtgga       600
     ccacaggaaa accaaaagat tttaaaatgg ccgacaatct ttcagacaaa aagggaacat       660
     atgggaggct aataagttta gaaaaatcaa ctttattcct ggatggagct ttttcatgat       720
     aatttttttc ggacactttg gagaattctc tgttaataag atgggcaggg tagcagtttt       780
     ccattaaaat acgtttaccc agatcggcgg tagtttgggt aaaatcctgg tcactcaagc       840
     gaaaaatacg ttgcgcaaga ttggtgacga cattacgttt gtaaataaat ggctgcaccg       900
     acaaaaaatt caacaaacgc cccgaggacg aaggcttttg gtaccatttg catttcaaaa       960
     cattattaac ccgggacaca gtcatatcaa ggaaattgat agactggttg acctcttctt      1020
     caagagtaaa ttgaatggag ggattttttg aattaaaaaa atgcaaaata ggtaccactg      1080
     tgtcctcatg aaccaccaaa aacaaatcgt cgacgtatct tttataaaaa agaattaaaa      1140
     atgaaatggt gccgagaatt tccagttcaa aatcctccat tactatgttc gccaacacag      1200
     cagagacact accccccatt gccaaaccac gaatctgatg aaaaaatttg tcctcaaact      1260
     gaaaaacagt ggactccaaa cacactttga gggcataaag aaattgatcc ttggggacgg      1320
     aacaatgttg accaatctca tcccaccgac gactaacaca ttctaaggcc aaatcggagg      1380
     aaatgttagt atacatggaa gtgacatcaa gcgaaatgag tttgtaccca tctggaatct      1440
     cctgattgtt gacagactca aaaaactcaa aagagttggc aacatggcaa tcagtatcac      1500
     cgacaatgtt agacaacaca gtagtgaaaa actttgacaa agcataaaaa ggtgacccaa      1560
     tggagctaac aatgggccgc aagggaaaat tttctttatg taattttatg agaccataaa      1620
     ttcgagacac gccagcgcct gacaccttca aattttcaaa aagattctta cttataaaat      1680
     cttgatcaaa ccactttttg accagaaaat tatttttagc aatatgcgca ggtattaatg      1740
     aatgacgaat ctgcttgtag gtagaggcat catctaacaa aacacgcatt ttttccctat      1800
     aatcaacact attcacaatg actgttttat tggttttatc cccattaatg accttgattt      1860
     gaggattgtt tttaataaag tgaaacgtat caattatatc ttttttaagc gttctagtat      1920
     aaaacactct ttgaaaagat tgatggtgct agagttgata ttttcatgac cgccgacacg      1980
     ttttacgaga tcagtgtaag tttttatggc atgacagacc ctatctctaa cggtgtcaac      2040
     aagagtaggt tcaaacctga tcttactttc tataccaaca ataatttttt caaggggcac      2100
     agctcgaaaa ggtgactttt ccaaactatc ttaaaaaagg gtatacaaaa tttaggtccc      2160
     aagcaaagga ctctcattgc gaaacttggc aactgtgtat ccgatatatt ctgtacccaa      2220
     gaatcttttt tatccaaaaa aggctggaaa attttgtgat agttgtcgag agcacgctgt      2280
     ttcaaagctg taaacttact ggcaagagac cggttgacat tatctttcag tttttcattt      2340
     cgcaacgaga tcgtggataa aaaatcagct aacacgaaat ttgggattac tgtgtgtaaa      2400
     aacttaataa cactaataat acgctgagaa atgttgtaac atttctcagc gtattattag      2460
     tgttattaag tttttacaca cagtaatccc aaatttcgtg ttagctgatt ttttatccac      2520
     gatctcgttg cgaaatgaaa aactgaaaga taatgtcaac cggtctcttg ccagtaagtt      2580
     tacagctttg aaacagcgtg ctctcgacaa ctatcacaaa attttccagc cttttttgga      2640
     taaaaaagat tcttgggtac agaatatatc ggatacacag ttgccaagtt tcgcaatgag      2700
     agtcctttgc ttgggaccta aattttgtat accctttttt aaaaatagtt tggaaaagtc      2760
     accttttcga gctgtgcccc ttgaaaaaat tattgttggt atagaaagta agatcaggtt      2820
     tgaacctact cttgttgaca ccgttagaga tagggtctgt catgccataa aaacttacac      2880
     tgatctcgta aaacgtgtcg gcggtcatga aaatatcaac tctagcacca tcaatctttt      2940
     caaagagtgt ttttatacta gaacgcttaa aaaagatata attgatackt ttcactttat      3000
     taaaaacaat cctcaaatca aggtcattaa tggggataaa accaataaaa cagtcattgt      3060
     gaatagtgtt gattataggg aaaaaatgcg tgttttgtta gatgatgcct ctacctacaa      3120
     gcagattcgt cattcattaa tacctgcgca tattgctaaa aataattttc tggtcaaaaa      3180
     gtggtttgat caagatttta taagtaagaa tctttttgaa aatttgaagg tgtcaggcgc      3240
     tggcgtgtct cgaatttatg gtctcataaa attacataaa gaaaattttc ccttgcggcc      3300
     cattgttagc tccattgggt caccttttta tgctttgtca aagtttttca ctactgtgtt      3360
     gtctaacatt gtcggtgata ctgattgcca tgttgccaac tcttttgagt tttttgagtc      3420
     tgtcaacaat caggagattc cagatgggta caaactcatt tcgcttgatg tcacttccat      3480
     gtatactaac atttcctctg atttggcctt agaatgtgtt agtcgtcggt gggatgagat      3540
     tggtcaacat tgttccgtcc ccaaggatca atttctttat gccctcaaag tgtgtttgga      3600
     gtccactgtt tttcagtttg aggacaaatt ttttcatcag attcgtggtt tggcaatggg      3660
     gggtagtgtc tctgctgtgt tggcgaacat agtaatggag gattttgaac tggaaattct      3720
     cggcaccatt tcatttttaa ttctttttta taaaagatac gtcgacgatt tgtttttggt      3780
     ggttcatgag gacacagtgg tacctatttt gcattttttt aattcaaaaa atccctccat      3840
     tcaatttact cttgaagaag aggtcaacca gtctatcaat ttccttgata tgactgtgtc      3900
     ccgggttaat aatgttttga aatgcaaatg gtaccaaaag ccttcgtcct cggggcgttt      3960
     gttgaatttt ttgtcggtgc agccatttat ttacaaacgt aatgtcgtca ccaatcttgc      4020
     gcaacgtatt tttcgtttga gtgaccggga ttttacccaa actaccgcca atctgggtaa      4080
     acgtatttta atggaaaact gctaccctgc ccatcttatt aacagagaat tctccaaagt      4140
     gtccgaaaaa aattatcatg aaaaagctcc atccaggaat aaagttgatt tttctaaact      4200
     tattagcctc ccatatgttc cctttttgtc tgaaagattg tcggccattt taaaatcttt      4260
     tggttttcct gtggtccaca aacagtataa taatttagga tttcttatgt ctcagttaaa      4320
     atcagaaaga gagactgagc aaatggcgga ggttgtttac catcttaagt gccaggattg      4380
     tgaaataggt tatattggtc agacaaaaca acttcttaaa aagagactca acgggcataa      4440
     atatgataaa aatgagaaga ccgcgttgca tcaccatgaa aacacactcc accatcattt      4500
     tgattttaac agcgttcgtg ttttagccac cgaaaagaac tgctttgccc gcagtatgct      4560
     cgagatgatt catattttgc gccaaaagaa tcacgtgtgt aattcgcgcg cggatgtcaa      4620
     cggtctcagc ggtgcttatc accaattttt cctctctgag gaggttggtg attaggtaat      4680
     ctttgcacct gtgttttgtt tgaactgttt accgtttcgc cagtccttgc cttgcaatta      4740
     cagcggcggc tcacttgtat ttgttttttg tgtgttttta tttttttatt tggttgaaaa      4800
     agggtctgtt aattggcccg aaacgtccca aattttaatt tgttccagcc tttatcccaa      4860
     tttaagttgt ttttc                                                       4875
//
ID   Penelope-20_LMi repbase;    DNA;    INV; 2174 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-20_LMi.
XX
NM   Penelope-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2174
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3428-3428 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..1315,1252..1572,1515..1913)
FT                 /product="Penelope-20_LMi_1p"
FT                 /translation="EKSLDDVTLSVLGKGLNFAPTPKALPLISFVSGVEEA
FT                 ARRLPTDAAEEIRRETSRALMKAPPQRSNLTSGERAALRNLREDPDTVILK
FT                 SDKGNATVLLPRTVYVDKMYGLLNDSAYRKLDDDPTGRVQRKTISLLNSSS
FT                 LPQVTIKRLRPHGSVPPRLYGLPKVHKENLPLRPIVSNIGAPTYDLAKHLA
FT                 SLLRPLVGKCSHHIRNSADFINRLGALRLSSSDLLVSFDVVSLFTKVPLTD
FT                 SLKLIGKNFQADVTALFQHVLSSTYFIFNKEYFEQTDGVAMGSPLSPMVAN
FT                 LFMEDFEERALESAPLKPTVFWRYVDDTFIVWPHGEDNLKKFLHHLNSLHD
FT                 NIRFTMEVEQNGCLPFLDVLVRRKNDGSLGHSVYRKPTHTDLYLQASSCHH
FT                 PSQTSSVLKTLVHRAHTISDADSLPQELAHLQQVFRETDILTSKSATRAGS
FT                 PPASVSRNGYSNQQINKALSVRKKNKKVENEEDTPAKSLAFLPFVGNISFK
FT                 IARILHNFQVKVIFRPPSKISDLLGSVKDDLLLRRLVSTKFPANVVWLILV
FT                 VTKAGVYKVPCQCGMAYIGQTTRTVEERCSEHKRNTRLLQPSKSAIAEHCI
FT                 STGHSMEYDKTVILTTATSFWDSIIKESVEIRVAENLMNRDSGYQLDKAWN
FT                 PVITKICSDRRRRRAPTSAVSGSGSAEDS"
XX
SQ   Sequence 2174 BP; 604 A; 479 C; 483 G; 608 T; 0 other;
     ggagaaaagt ttggacgatg tgacgttatc tgttttaggt aaaggactaa attttgcacc        60
     tacacccaaa gcacttcctt taataagttt tgtgagtggg gttgaagaag ccgcacgacg       120
     ccttccgacg gatgctgcag aagaaataag aagagagacc agccgtgctc tgatgaaagc       180
     tcctccacaa cgcagtaatt taacctccgg agaaagggct gcactacgaa atctgagaga       240
     ggatcctgat actgtgattt tgaagtctga caaaggtaat gcaacagttc tactacctcg       300
     tactgtgtac gtagataaga tgtatgggct attaaatgat tctgcctata gaaagttgga       360
     tgatgatcct acaggacggg tgcaacggaa gactatttct cttttaaact cttcctcatt       420
     acctcaagtt accatcaaga gattaagacc acatggctct gtaccaccaa gattgtatgg       480
     ccttcctaag gttcataagg aaaatttgcc tttgcgtccc atagttagca atattggtgc       540
     ccccacatat gacttagcaa aacatcttgc ttccttactc agaccattgg tgggcaaatg       600
     ctcgcaccat ataaggaatt ctgcagattt tatcaataga ctgggggctc ttcgtcttag       660
     tagctctgat cttttagtca gcttcgatgt ggtatctctt tttacaaagg ttcctctcac       720
     agattctttg aaactaattg gtaaaaattt tcaagctgat gtcactgctc tctttcagca       780
     tgttctttcc tcgacctatt ttattttcaa caaagaatac tttgagcaaa ctgacggtgt       840
     cgccatgggt agccccctgt ctcccatggt ggctaacctt tttatggagg acttcgagga       900
     acgagccctt gaatcagcac cccttaaacc tacggtgttt tggaggtatg tagatgatac       960
     tttcattgtg tggcctcatg gggaagataa tctaaagaag tttttacatc atctcaactc      1020
     ccttcatgat aacatccggt tcactatgga agtagagcaa aatggatgct tacctttttt      1080
     ggatgtttta gttagacgga agaatgatgg ctctttggga cactcagttt atcggaagcc      1140
     aactcatact gatttatatt tacaggcttc aagttgtcac catccgtcgc aaaccagtag      1200
     tgtccttaaa acacttgttc acagagccca cacaatctca gatgctgata gtctgccaca      1260
     agagctggct cacctccagc aagtgtttcg agaaacggat attctaacca gcaaataaat      1320
     aaggcactct cagttagaaa gaagaacaag aaagtggaga acgaggagga tacaccggca      1380
     aaatctcttg cttttcttcc gtttgtgggc aatatttctt ttaaaatagc aagaattctc      1440
     cataattttc aagtgaaagt gattttccgc ccaccatcca aaatttcaga cttgctgggt      1500
     tcggttaagg atgacttgtt gttacgaagg ctggtgtcta caaagttccc tgccaatgtg      1560
     gtatggctta tataggccag actacgcgca ccgttgaaga acgttgcagt gaacacaaac      1620
     gcaacacacg ccttttacag ccaagcaagt ctgctattgc tgaacattgc atttccaccg      1680
     gacactctat ggagtatgat aaaacggtaa ttttgacaac agcaacatct ttttgggact      1740
     ccattatcaa agaatctgtg gaaatacgtg tcgcggaaaa tttgatgaat cgggatagtg      1800
     gctaccaact tgacaaagca tggaatcccg tcattactaa aatttgctca gatcgaagac      1860
     gacggagagc gccgacgtcg gctgtgagcg gcagtggcag tgcagaggac agctgaactc      1920
     cgcggctcca ccagcgaggg cgctgccgtc cggcagtgtg gcctgtctgt ttatgttttg      1980
     acgcatgcgc tgtaaccgcc aagttttcta tatatagtgg aacgctggac gcactcttca      2040
     gtcttcatcg actcacctga ggatggctag caggtgtctg gccgaaatat cgtgtgatgt      2100
     tttagacgac gaccggctgc atacccgaaa cttctatgaa tattcgatcc gccgggagaa      2160
     ttttaaagtt caca                                                        2174
//
ID   Penelope-21_LMi repbase;    DNA;    INV; 2227 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-21_LMi.
XX
NM   Penelope-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2227
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3429-3429 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           328..1998
FT                 /product="Penelope-21_LMi_1p"
FT                 /translation="LFYCYKGNATVILNTINYHEKVKVLLEDTTYRRLKRD
FT                 PTTTLSRKTGELLRTSGLSEELVKNLRPRAPRPPRLYGLPKVHKGGIPLRP
FT                 TVSAIGSPTYRLAKYLTKLLSPIVGHCSHHINNSKMFVDIIKQMRIGQNDI
FT                 MVSLDVVSLFTKVPVEDTLKLLAAHFSPEILKLFRHTLTTTYFLYGGNYYE
FT                 MTDGTAMGSPLSPAIANFFMEDFEERALNSAPFRPSCFYRYVDDTFLIWPH
FT                 GNEALQQFVDHLNGIHPNIRFTVEVEKDGKLPFLDVLVERKSDGRLGHSVY
FT                 RKPTHTDLYLNARSFHHPTQKKAMLNTLVHRARIISDENHLDSEINHLKKV
FT                 FRKNGYSSRDIRSTLSRKPRQDAISTNQEDQHIARLPFCGATSSKIGRVLN
FT                 RQGIRPVFRPPKKMKEMMPPVKDNLGLRVPGIYSIPCECGKNYVGQSIRTV
FT                 SERCVEHQRHLKYRHLEKSAVVEHSLLNKHRILFEETRVLAHASNYWDSVI
FT                 REAIEIRLCDNNINRDSGYALSNAWKRALEKEKEQRLAPRTFSTSRRLPPA
FT                 ARDGAANNAE"
XX
SQ   Sequence 2227 BP; 673 A; 503 C; 524 G; 527 T; 0 other;
     acaggccgac aaatttgtgc gccttaatcg ggaacaaagt tgcagatcca aaaatgataa        60
     ccgcctgtca tcaatttatc cgacaggaaa tggatgaagc caccatttct gttctcagta       120
     aaggactgaa tttgcgcctg ctcctcgtaa gataccagtg gccgagatta tcagtggagt       180
     ggaacaagcg gttcgacacc ttcctgaaga agctgcagat gatataaggc tcgccacgag       240
     tcgattttag caacagccaa acctccaaag tccaatataa gagggagaaa atggcgctga       300
     aatcattgga gaaggacagc gatttagttg ttttactgct acaaggggaa tgctacagtc       360
     atcctcaata ctatcaacta tcacgagaaa gtgaaagtgt tattggaaga caccacatac       420
     cggcgtctca aacgtgatcc cacaacaaca cttagtagga agacagggga gctattgagg       480
     acatctggcc tctcagaaga actagtgaaa aatctaagac ctagagcacc caggccaccc       540
     aggttgtatg gtttgcctaa ggtgcataag ggtgggatcc ctctaagacc gactgtcagt       600
     gccattggat cacccactta tcggttggcc aaatacttaa caaaattatt gtcaccaata       660
     gtcggccact gctctcatca tattaacaat tcaaaaatgt ttgttgacat cataaagcag       720
     atgaggatag gccagaatga cataatggtc agcctcgatg tggtttctct ttttacgaaa       780
     gtaccagtgg aagacacatt aaaactgctg gctgctcact tctctcctga aattttgaag       840
     ttatttcggc acactttgac gaccacttat tttttgtatg gtggaaatta ttatgaaatg       900
     actgacggaa cagccatggg ttcgccactg tcaccagcca ttgcgaactt cttcatggag       960
     gattttgaag aacgagcgtt gaacagtgct ccctttcgtc catcttgctt ctataggtat      1020
     gttgacgata catttttaat ctggccacac gggaatgagg cactgcagca gttcgtggat      1080
     catttgaatg gaatacaccc caacataaga tttacagtgg aagtagagaa ggacgggaag      1140
     ctacccttct tagacgtgtt ggttgaacga aaatcagatg gacgacttgg acactctgtg      1200
     tacagaaagc cgacgcatac agacttgtat ctgaatgccc gtagctttca tcatcccact      1260
     cagaagaaag ctatgctgaa caccttggta cacagagcaa ggattatttc agacgaaaac      1320
     cacctcgact ctgagatcaa ccacctgaag aaggtcttca gaaagaatgg atattcctcc      1380
     cgtgatatta ggtccacact gtcgaggaaa cctagacagg atgctatttc aacaaatcaa      1440
     gaggaccaac acatcgcgcg gcttccattc tgcggtgcaa caagcagtaa aatcggaaga      1500
     gtcctaaata ggcaggggat ccgacctgtc tttcgtcctc ccaagaagat gaaagaaatg      1560
     atgccacccg tcaaagacaa cctcggtctg agagtgccgg gaatatacag cattccgtgc      1620
     gagtgtggca aaaattacgt ggggcagtca ataagaactg tttccgaacg ctgcgttgaa      1680
     catcagcgtc acctgaaata caggcattta gaaaaatctg cggtggttga gcacagcctg      1740
     ttaaataaac atcggatttt gtttgaagaa acgagagtac tggctcacgc ttccaactac      1800
     tgggattctg tcatcaggga ggcgattgaa atcagattat gcgataataa tatcaataga      1860
     gactccggat atgcactcag caatgcatgg aagcgagcac tggagaagga gaaggaacag      1920
     aggttggctc ccagaacctt tagtacttcc cgcagattac cgcctgctgc gagagatggc      1980
     gctgctaaca acgcggaata gagtgcgcta gaaaattcta ggtggttaga tggcaccacc      2040
     caagtacgcg ccattaccgc tgtgacgtaa gctagccaat gagaagccgt ctcctggtta      2100
     tataagcgga agcctccagt tcacggcagt cagttttacc cctgacgacg actatggagg      2160
     atatagtcga aagcttgggc tcctacccat atttgacgcg gcaagaacac cgagagtatt      2220
     ttacgca                                                                2227
//
ID   Penelope-22_LMi repbase;    DNA;    INV; 2317 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-22_LMi.
XX
NM   Penelope-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2317
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3430-3430 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(511..867,774..1181,1112..1609,1459..2055,
FT                 2040..2315)
FT                 /product="Penelope-22_LMi_1p"
FT                 /translation="MRCLLEDSAYRKIDTDPTKKVERKTMALLKDSGLPDQ
FT                 VVRKLRVKAPIPPRLYGLPKVHKENVPLRPIVSNIDAPTYLLAKHLKDMLS
FT                 PYVGKCPHHIRNSVDFVERLRNLGSRTLTYWPLCWQMSTSHTKLGGFCGTP
FT                 QKLRLTNSDLLVSFDVVSLFTRVPLQDSLELIGRIFDVKITNLFRHVLTST
FT                 YFLFDGAYYEQTEGVAMGSPLSPVVANMYMEHFEEEALDSAEWKPTCFFRY
FT                 VDDTFVVWPHGRENMETNLFFQVCRRYIRRMASWKRKLNQFLDHLNSRHQN
FT                 IKFTMEVEVEGKLPFLDVLVRRRPDGTLGHSVFRKKTHTDLYLHADSCHHP
FT                 AQRNGVLKTLVHRAHTLSDSDSLNEELEHLKTVFRRTATQSGKFGEPYVMH
FT                 HRRKQLRNLRRMLPLHFFHIVAHYPARALKDCIPKNGYTEWQIRRALRHAP
FT                 PAETVEEPQEDVATAFLPYCGALSSKIGRILRKHQVKTVFRPPAKTKALLG
FT                 RIKDDLGLRKSGVYEIPCQCGETYIGQTLRTVEDRCREHQRHTRLQQPNKS
FT                 AVAEHCLSELHGMDYKNTRVLTQTSSFWDCIIESIEIRVREPQINRDSGYT
FT                 LSEAWKPALSIIKKGNKIRITNNSHNELTSAGGGVQSRHRQRTRWARTRRE
FT                 RGTTRRRQQTSRARTAYETAEEGGDKSVATAPGSQLMMATGLVAEILCQFD
FT                 TGIRPHTRELFH"
XX
SQ   Sequence 2317 BP; 677 A; 560 C; 589 G; 491 T; 0 other;
     gcggctgcaa gaagaataaa gaaacgttag ctatggtacg ggagagagtg ccttcaccga        60
     tgcttggact taaccagaac tactcagact gcatctgtat cttgccaacc agttcagttc       120
     ctggactggg aatggttgat ggtgtacctg ggcacaggaa gagaatcagt cgaaaatatc       180
     agaaaaacaa ccactggtgt tccctgcaag acgacatatc tcacaactaa gaacggataa       240
     ggcggtctca gtctaagagg atcaactttg cactacttaa actgaaccta tcggacatca       300
     tcgcgcagta gagcaggtgg ccatctgaag tagctgagga ggcggcgaga aactgtcgtg       360
     ctctcacgaa aaccaaacct atgaaacgaa catttctacc agagagagga cggcaattcg       420
     ggaacttaga gaagatccaa tactgtagtt ataccagctg acaagggcaa cgccacagtg       480
     gtcctttctc gtcaggacta cagtgagaag atgagatgcc tgctagaaga tagtgcatac       540
     cggaagatcg acacagatcc caccaagaaa gtggaaagga agaccatggc gcttctcaaa       600
     gattctggcc tgccagatca agttgtcagg aagctacgag tgaaagcacc gatccctcct       660
     agactctatg gacttccaaa ggtccacaag gaaaatgtgc cactacgccc cattgttagc       720
     aatattgatg ccccaacata cctactagct aaacacctta aggacatgct tagcccttat       780
     gttggcaaat gtccacatca catacgaaac tcggtggatt ttgtggaacg cctcagaaac       840
     ttaggctcac gaactctgac ctactggtga gcttcgacgt cgtttccctt ttcaccagag       900
     tgcctctaca agattcactg gaactaattg gacggatctt tgatgtaaag atcaccaacc       960
     ttttcaggca tgtactgaca tcgacttact ttcttttcga cggtgcttac tatgagcaga      1020
     cagaaggagt ggccatgggg agcccactat ctccagttgt cgccaacatg tatatggagc      1080
     atttcgagga ggaagctcta gattcagctg aatggaaacc aacctgtttt ttcaggtatg      1140
     tcgacgatac attcgtcgta tggcctcatg gaagagaaaa ttaaatcaat tcctggacca      1200
     tctcaattcc agacaccaga atataaagtt cactatggaa gtggaagtgg aaggaaagct      1260
     tccctttctg gatgttctgg ttagaagaag acctgatggg acactggggc acagtgtttt      1320
     ccgcaagaag acgcacaccg acttatacct gcatgcggac agctgccacc atccggcgca      1380
     aagaaacggt gtgctgaaaa cactggtaca cagggcgcat accctctcgg acagtgacag      1440
     tctcaatgaa gaacttgagc acttaaagac tgtattccga agaacggcta cacagagtgg      1500
     caaattcgga gagccctacg tcatgcacca ccggcggaaa cagttgagga acctcaggag      1560
     gatgttgcca ctgcatttct tccatattgt ggcgcactat ccagcaagat agggcgaatt      1620
     ctacgaaaac accaagtgaa gactgttttc cgcccgccag ccaaaactaa ggctttgctt      1680
     ggcaggatta aggatgacct gggtctacgt aaatccggag tttatgagat cccatgccaa      1740
     tgtggtgaga cttacattgg tcagacgttg cgtactgtcg aagatcgctg tcgtgagcat      1800
     cagcgacaca cgagactaca acagcccaac aaatcggcag tcgcagaaca ctgtctttct      1860
     gaattacatg gcatggacta caagaatacg agagttctga cccagacgtc cagcttctgg      1920
     gactgtataa tagagtccat cgagatccga gtgagggaac cgcagattaa tcgcgacagc      1980
     ggctacacac ttagtgaagc atggaaacct gcactcagca taattaagaa aggaaataaa      2040
     attcgcataa cgaactgacg tcggccgggg gcggggtaca gagcagacac cgccagcgga      2100
     cccgctgggc gcggacgcgt agggagcgag gtaccacgag acgccgccag cagacgtcgc      2160
     gggcgcggac ggcgtatgaa acggcggagg agggaggaga taaaagcgtc gccaccgctc      2220
     caggcagtca gctgatgatg gcaacaggtt tggttgccga aatattgtgc cagtttgaca      2280
     cagggatccg gccgcacacc cgtgaacttt ttcatca                               2317
//
ID   Penelope-23_LMi repbase;    DNA;    INV; 2650 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-23_LMi.
XX
NM   Penelope-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2650
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3431-3431 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           616..2211
FT                 /product="Penelope-23_LMi_1p"
FT                 /translation="MKPNISNRERAAIRKLREDPDIVVLPADKGNATVILS
FT                 RQDYTKKIQDLLDDSAYQKIDADPTKRVERKTLALLKDSGLPEEVTKKLRP
FT                 RASVPPRLYGLPKVHKESVPCRPIVSNIGAPTYPLAKYLKELLSPYVGKCP
FT                 HHIRNSTDFLGRINNLTLKESDILVSFDVVSLFTRVPLPESLELIGQKFDE
FT                 ETTNLFRHVLTSTYFLFDGGYYEQTEGVAMGSPLSPIVANLYMEHFEEEAL
FT                 ESANLKPTCFFRYVDDTFVIWPHGRDKLTEFLTHLNSRHENIKFTMEVEAD
FT                 GMLPFLDVLVRRRDDGTLGHSVYRKKTHTDLYLHADSCHHPAQRNGVLKTL
FT                 VHRARTLSDKDSLQQELDHLKSVFLKNGYTEGQIRKALRPTAQRAETDDEP
FT                 EENTAMAFIPFCGALSGKIGRILRRYQVKTIFCPPVKTRALLGSVKDDLGL
FT                 RKSGVYKIPCQCGEEYIGQTIRTIEERCREHQRHTRLQQPNKSAIAEHCLS
FT                 NLHGMDYDQTKVLAQTSKYWDCIIKEAIEIRKGNQN"
XX
SQ   Sequence 2650 BP; 777 A; 663 C; 648 G; 562 T; 0 other;
     ccaggctgtt cacccgagac tatttcatca tgaaatacgc ctgaaaatga gaacccatca        60
     atacctctgg agatgcatcg cagcatgaaa agacaagcca gaagtcggct gttgtctttg       120
     ctttcctatg ccgagaagtg tggtaccgaa ttttgccaag gttaacacca catcgatcag       180
     cagcagccag aaaattaaga aacgtgccag cctagttggt acagagagag ttctacactg       240
     tggtgcctgg atactaccaa taaagaactc ctcaactaca ttacttgcaa ccagttcagt       300
     tcctgcactg ggattgggtt gatggggtca acctgcccaa aggaagtcca ccaaacgaca       360
     gacatccaag ttcgaacgta tatcggagaa acaaccttct gaaagggtgg aaagaacatc       420
     atcaatctac caacaaagaa ctggtaatga tgctatctcg gttcttaaaa aggtttgaat       480
     tttgctccga ctcctaaaga aacacccatt gctgacatca tcagtgcagt ggaacaaacg       540
     gctgctcgac tcccacctga ggcagctgaa gaggtgcgtc gtgaaacctg cagggcgcta       600
     acgaaaacaa gacctatgaa accgaacatt tccaacaggg agagggcagc tattcggaag       660
     ctaagagaag atccagacat agtggtctta ccagcggaca agggtaacgc tacagtaatc       720
     ctatctcgcc aggattacac taagaagatt caagacctgc tagatgacag tgcataccag       780
     aagattgacg ccgatcctac caagagggtc gagaggaaga ctctggctct tctcaaagat       840
     tccggtctcc ctgaagaggt tacaaagaag ctacgcccta gggcctctgt tcctccgagg       900
     ctgtacggat tgccgaaggt tcacaaggaa tcggtgccat gtcgtccgat tgtcagcaac       960
     attggtgccc cgacgtatcc tctcgccaag tacctcaagg agttgctctc cccctacgtg      1020
     gggaaatgtc cacaccatat ccgcaactcc acggatttcc tgggacgtat caacaacctg      1080
     acgctcaagg aatctgacat actcgtgagt ttcgacgtgg tctctctgtt caccagggtg      1140
     ccgttacctg aatctttgga actcatcggc cagaaatttg atgaggagac caccaacctc      1200
     ttcagacatg ttcttacgtc aacatatttt ctatttgacg gtggatacta tgagcagact      1260
     gaaggagttg ctatggggag tccactctct cccattgtcg ccaacctgta catggaacat      1320
     ttcgaggagg aagctttgga gtcagcaaat ctaaaaccca cttgtttctt cagatacgtg      1380
     gatgatacct ttgttatatg gccacatgga agagataagc tgacggagtt tcttacacat      1440
     ctcaactcca ggcacgagaa tattaagttt accatggagg tcgaagcgga tgggatgctc      1500
     cccttcttgg atgttctggt tagaagacga gatgacggca cgctgggaca cagcgtgtat      1560
     aggaagaaga ctcataccga cttgtaccta catgcagata gctgccacca ccctgcacag      1620
     aggaatggcg tgctaaaaac tcttgtacac agagctcgca ccctatctga caaggacagt      1680
     ctccaacaag aattggacca tctgaagtct gtgtttctga agaacggtta cacggaaggg      1740
     caaatccgga aagctctacg tcccacagca caacgagcgg aaactgatga tgaacctgag      1800
     gaaaatacgg ccatggcttt cattccgttt tgtggggcct tatccggaaa aattggacgc      1860
     attttacgca gataccaagt taaaaccatc ttctgccctc cggtaaaaac cagagcactt      1920
     cttggcagtg ttaaggacga ccttggtcta cgtaaatcag gggtttacaa gataccttgc      1980
     caatgcggcg aggaatacat aggacagact attcgtacca ttgaagaacg atgccgcgaa      2040
     caccaaaggc acacgagatt acaacagcca aataagtcgg caatcgccga gcattgcctg      2100
     tcgaacctcc acggtatgga ttatgaccag accaaggtcc tagcacaaac ttcgaaatac      2160
     tgggactgca tcatcaaaga ggctatagag atcagaaaag gaaaccaaaa ctgaatcgag      2220
     acaacggcta ttttcttagc aaagcctggg aaccagctat tacccggatt aagacgaaga      2280
     atgaaacatc ccatagtgta ctgactttga gggcgggggg agaaacagat ggaacgcccc      2340
     gccggcggac ccccctgggc gcggacctgg agacctagga gggaacgccc agacgacgga      2400
     cgagaggagg cgggatctga accgtggacc gggcgcggac cgcgatgggc tcagacggag      2460
     cgcccgaagg aggagggggg aatctgatat ataccccacc caggccgccc ccatggcagt      2520
     acatcagcac acctgatgat ggcaacatgg tcgattgccg aaatattgtg tcctatgcac      2580
     acatacacca ggctgttcac ccgagatcta tttcatcatg aaatacgcct ggagaaattg      2640
     aagaaccaca                                                             2650
//
ID   Penelope-24_LMi repbase;    DNA;    INV; 1800 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-24_LMi.
XX
NM   Penelope-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1800
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3432-3432 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(64..1419,1358..1552)
FT                 /product="Penelope-24_LMi_1p"
FT                 /translation="FTTYFTAKHLAKKLRKHVGNTSSYVKNSEHFIELIKN
FT                 MSISPTDLMVSFDVESLFTNVPVEDTVALLQDLIPPDICELVKHCLTSTYF
FT                 RWQGKFYEQTDGVPMGSPLSPVAADIFMEALEETALNSAPLRPKYWLRYVD
FT                 DTFIIWPHGKEKLAEFLEHLNSQHEKIKFTVEIEKDGSIPFLDVLVYKTAT
FT                 GTLGHRVHRKPTHTNRYLHAQSHHHPAQKNSVLRTLVTRAQRISDDNNLEE
FT                 ELTKLRSTFRANGYSDRSIKKAIKPRRTKENDTEVEELPVARLPYIKGISE
FT                 RIGKVLRRAGIKPVFSSNNRIKDILTSTKDPIGKLNTAGVYKINCGCGTVY
FT                 IGETGRPIHVRMAEHERYIRLKQHSKSAVAEHEEECNHNINFKDVQVLSKQ
FT                 PFKTKRKIREAIEISKHPYNMNREDGYKLSPSWLPVLTTRRRFAASGTTGP
FT                 QAADGRSQHGDASRRAVQRALRPQMGVPDSVATSSLPRRTKPTVRLPPLMA
FT                 KSAHAYNFLFSTNRNHRCKHQ"
XX
SQ   Sequence 1800 BP; 584 A; 441 C; 396 G; 379 T; 0 other;
     gatttatggg gtcctaagat tcacaaaaac tcctgtccat tacgaccata gtcacagcat        60
     taattcacca cttacttcac agcaaagcat ctagccaaga aactacgcaa gcatgttggc       120
     aacacaagct cttacgtgaa gaactctgaa cattttattg aacttattaa gaacatgagc       180
     atctctccca ccgatttgat ggtgagcttt gacgtggaat cactcttcac aaacgttcct       240
     gtggaggaca cggtggccct gttacaggat ctcataccac cagacatctg tgaattggtg       300
     aaacactgcc tgacgtctac ctatttcagg tggcaaggca aattctatga gcagacggac       360
     ggagtaccca tgggctctcc cttgtcacct gtagcagcag acatcttcat ggaggctttg       420
     gaggagacag ctttgaactc agcaccttta cgaccaaagt actggcttag gtatgtcgac       480
     gacaccttca ttatatggcc acacggaaag gaaaagttag ctgaattcct tgaacatctc       540
     aacagccagc atgagaaaat aaaattcacc gtggaaatag aaaaagatgg ttccatccct       600
     tttctggacg tactagtgta caaaacagca acaggcacac taggccacag agtgcacagg       660
     aagccaaccc acaccaaccg gtacttgcac gcgcagtctc atcaccatcc ggcgcagaag       720
     aactcagttc tacgcacact agtcaccagg gcgcaacgga ttagtgatga caataatttg       780
     gaagaagagc tcaccaagtt gcgatcgaca ttccgtgcca atggatacag cgacagaagc       840
     atcaagaaag ccataaaacc gcggcgaact aaggaaaacg acacggaagt cgaagagtta       900
     ccggtggcac gtttgccata cattaagggg attagtgagc gcattgggaa agtcttacga       960
     cgagctggca tcaaacctgt tttttccagc aataacagaa ttaaagatat cctcacatca      1020
     actaaggatc ccataggaaa gctgaatact gctggtgtgt ataaaataaa ctgcggatgt      1080
     ggaacagtat acataggaga aacaggaagg cctatccatg tacgaatggc agagcatgaa      1140
     aggtacatac gtttaaaaca gcacagcaag tcagcggttg cagaacacga ggaagagtgc      1200
     aaccataata taaacttcaa ggacgtacaa gtgctctcta aacagccatt taaaacgaag      1260
     agaaaaattc gtgaagcaat cgagatcagt aaacacccct acaacatgaa cagagaagac      1320
     gggtacaaac tctcaccgtc ttggcttccg gtgttgacaa cacggcgacg cttcgcggcg      1380
     agcggtacaa cgggccctca ggccgcagat gggcgttcct gacagcgtgg caacttcgtc      1440
     actacccaga agaactaagc cgaccgttcg gttgccgccg ttgatggcca agagcgcgca      1500
     tgcgtacaac ttcctgtttt ccaccaatag gaatcaccga tgcaaacacc aataaagcgc      1560
     atcttccttt cctatttcca cctatcagaa acaccaatgc aaacaccaat caaaactaaa      1620
     ctgttaggac agtacacgct ttataagacc agcacaagga ggaaacaagt cagtattccc      1680
     tgaggaaggc tcctgcaacg gatccgaaac gttggaaaga ttttattatc atgacgcggc      1740
     aaatagctca gaagaatttt aacgttaaca ataatgaccg cgaaagccta cgttcgtaca      1800
//
ID   Penelope-26_LMi repbase;    DNA;    INV; 1795 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-26_LMi.
XX
NM   Penelope-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1795
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3433-3433 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(391..573,577..879,804..1736)
FT                 /product="Penelope-26_LMi_1p"
FT                 /translation="CVGTTGTNFPADIAELFKCCLTTTYFKWNEQFYEQTD
FT                 GVAMGSPLSPVIANFLWRNSKNRLVLPERKPNVWFRYVDDTFVLWRHGREE
FT                 LTRFHEHLNSINTKIQFTMEEEADGKLHFLDVLVFRKENGSLGHTVYRKPT
FT                 HTDRYLHRDSNHHPQQKRVLSRRAHTHGSLFAPGFEPPPTTEAGVIKTLAD
FT                 RARNICEPELLDAEMEHLHNALMKNGYSSAEIKRALKQPRRNHNNEQATAK
FT                 SKVFLPFVKNVTERIGRILTKRNISVIYKPTRKIQEHLKPAKDARKPFEKA
FT                 GVYRIPCSCGDVYVGTTKRTVAKRLEEHKGNCRRGETERSAVAEHAFQPGN
FT                 HHIRFDETQVLAATSGYYERLYREAIEIAKHPNNFNRKEEGMKLNGIWMPV
FT                 LKKRCTTRPLQCDGNGDRRQRTTANCTDVFKTRDVTRRRGNARTPNLAAVS
FT                 SEPVCVLDLQSYRPPEDVLRRRGRNVGF"
XX
SQ   Sequence 1795 BP; 567 A; 381 C; 448 G; 399 T; 0 other;
     ggttgaaagg agggctttaa aactcttgaa gatgatttgt cctccctgac aagggaaagc        60
     aatggtgttg tgatgtggcc aacagagaaa attactgatc tattgatccg caagctatag       120
     gaaactgaat aagaacccca ctaacaagat tcttggaact gcgtatgata aaaaaaagtc       180
     ctatcgaaga gagtgtacaa tgcagagctt cacaatataa aggaaattgt tgaatactaa       240
     ccatcaccta ccaagttttt gactacgctg ttaagtctct atataaagaa ttcggcacat       300
     tttatcagta gatgaatggc agtgtccagc ggaggacata ttggtcagct tcgatgtggt       360
     atcgctgttt accatggttc cgcttagtga tgtgttggaa caactggaac gaattttcct       420
     gccgacattg cagaactgtt taagtgctgt ttgacgacca catacttcaa gtggaatgag       480
     cagttttatg aacaaacgga tggcgtggct atgggaagcc ccctaagtcc tgtaattgca       540
     aactttttat ggagaaattc gaagaacagg ctttaagtac tgccagaaag aaagccaaat       600
     gtatggttcc gatacgtgga tgacactttt gtgctgtgga gacacggcag ggaggaacta       660
     acccggttcc acgaacattt gaatagcata aacacgaaaa ttcagttcac aatggaggag       720
     gaggcagacg gcaaattaca ttttctcgat gtgcttgttt tcagaaaaga aaatggtagt       780
     ttgggccaca cagtataccg taagcccaca cacacggatc gttatttgca ccgggattcg       840
     aaccaccacc cacaacagaa gcgggtgtta tcaagacgtt agcggataga gctagaaaca       900
     tttgtgaacc tgagttgctc gacgctgaga tggaacatct ccacaatgcg ctaatgaaga       960
     acggatactc gtcagcagaa ataaaacgtg cgttgaaaca gccacgcaga aaccataata      1020
     atgaacaggc cactgcaaaa tctaaggtgt ttctgccgtt cgttaaaaat gtaacggaaa      1080
     gaattgggag aattttgacg aagcggaata tttccgtaat ttacaaacca acccgtaaga      1140
     tacaggaaca ccttaagcct gccaaggacg ctcgcaaacc attcgaaaaa gctggagtgt      1200
     acaggatccc gtgcagttgc ggagatgttt atgtgggtac caccaaaaga actgtcgcaa      1260
     aacgtttgga agagcacaag ggcaattgta gaagaggaga aacggaacga tcagctgttg      1320
     cggagcatgc tttccagcca ggtaaccacc acattcgctt cgacgagacg caagtactag      1380
     cggccacaag cggatactat gaaaggctct acagggaggc aattgaaatc gccaaacatc      1440
     cgaataattt caatcgtaag gaagagggca tgaaactaaa cggtatatgg atgccggtgc      1500
     tgaagaagag atgtaccacc cgtccactac agtgtgatgg caacggcgat cggcggcagc      1560
     ggacgacggc caattgcact gacgtcttca aaacacgtga cgtcacgcgt cggcgcggga      1620
     acgcgcggac accgaactta gcggcagtca gtagcgagcc agtgtgtgtg ttggacctgc      1680
     aatcctacag accccctgaa gatgtcctcc gcagacgggg acgaaacgtt gggttttgac      1740
     aacaaattca accgaccacg gcataacagc ccggataatt ttaatggaca tgaca           1795
//
ID   Penelope-27_LMi repbase;    DNA;    INV; 1875 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-27_LMi.
XX
NM   Penelope-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1875
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3434-3434 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(98..1252,1248..1745)
FT                 /product="Penelope-27_LMi_1p"
FT                 /translation="FWGTPTGNCHGTDHKNNEEDILKQSSLEEAVIKNLLP
FT                 QAPRPPTLYGLPKIHKTGVPLRPIVCTIGSPTYRLAKHLATLLTPHVGHCG
FT                 HHLQNTEDFISRIKQLRLGEGDIMVSFDVVSLFTRVPIKDCLDLLSHLFDN
FT                 TIVGLFKHTLTSSYFMYGGQYFDQTDGVAMGSPLAPSIANLFMEKFEDTAL
FT                 NTAPAQPSCFYRYVDDTFVIWPHGREKLGEFLDHLNSVHDHIKFTMEVEKD
FT                 GSLPFLDVLVRRKTNGHLSHSVYRKPTHTDRYLNALSHHHPAQKRGVLNTL
FT                 VHRAKVVSDAESLPRELTHLRRVFRDNGYSHRQIEQAISGDKSRKSTSEEE
FT                 SKNLAFLPFCGTVSGKISRLLKRYNIASVFRPPAKIRQMMRPGRKRRPRSQ
FT                 NTRSYKIPCECGCYYIGQTVRTVEQRRTEHERCLRLRYPEKSAVAEHSLEN
FT                 RHRILFDETSVIAKTKGYWDSVIKEAIEIKISENTINKDVGLQLSTAWDPA
FT                 IARLKQTRRTRDEEASPSDVTASSQKRTQPTQDVNIALYGEAEGSSDVTAS
FT                 SAAI"
XX
SQ   Sequence 1875 BP; 539 A; 471 C; 448 G; 416 T; 1 other;
     gcgaagtctg aagcgacccc tcaccgtggt ctactgctga taagggcaat gcaaccgtat        60
     tctgaatcag ccgactacga cgctaaaatt cagctaattc tgggggacac ctaccggaaa       120
     ctgccacggg accgaccaca agaataatga ggaagacatt cttaagcagt catcgttgga       180
     agaggccgtc attaagaatc ttctccctca ggcaccaaga ccacctacgc tttatggact       240
     gcctaaaatt cacaagacag gggtgcctct tcgccccatt gtctgtacca ttgggtcacc       300
     aacttacaga ctggcgaaac atctggccac tctcctcaca ccgcacgtcg gtcactgtgg       360
     gcaccactta cagaatacag aagatttcat cagtcgaatc aagcagctgc gtcttggtga       420
     aggtgacatt atggttagtt ttgatgttgt ctccttattt acacgtgttc caatcaaaga       480
     ctgcttggat ctcctctccc atttattcga caatacaatt gtgggactgt ttaagcacac       540
     gttgacatcg tcctatttca tgtatggcgg ccagtatttc gaccagacag acggcgtggc       600
     gatgggaagt ccgttagctc catcmatagc aaacctcttt atggagaaat ttgaggacac       660
     tgccttgaac actgctccag cgcagccaag ttgtttttac cgctacgtcg atgatacatt       720
     tgtcatctgg cctcatggac gtgagaaact gggagaattc ttggatcatc tgaacagtgt       780
     tcacgaccac attaaattca cgatggaggt ggaaaaagac ggttctttac ccttccttga       840
     tgtcctcgtc cgccggaaaa ccaatggtca cctcagccac agtgtctaca ggaagcccac       900
     tcatacggat cggtatctga atgcgctcag ccaccaccac cctgcgcaaa aacgcggcgt       960
     tctgaacacc ctagttcacc gcgcaaaagt cgtttcagac gctgaaagtc tgccacgaga      1020
     gctaacccat ctccgaagag tcttcaggga taatggctac agtcaccgcc aaatagaaca      1080
     agcaatttct ggcgataaaa gcaggaaaag tacgtcagaa gaagagagca agaatctagc      1140
     ttttttgcct ttctgtggaa cagtgtcggg aaagattagc cggctcctga agagatataa      1200
     catcgcttct gtgttcaggc ccccagcaaa aatacgacag atgatgaggc cgtaaaagac      1260
     gacctaggtc tcaaaacacc aggagttata aaataccatg tgagtgtggc tgctattata      1320
     ttggacaaac tgtacgcact gtggagcaac gccggacaga acacgagagg tgcttacgtc      1380
     ttcgctaccc ggaaaaatca gccgtggcag aacattcttt agaaaatcga caccgaattc      1440
     tgttcgacga aacatctgtc attgctaaaa cgaaaggata ttgggatagc gttataaagg      1500
     aagctattga aatcaaaata tctgagaaca ccattaataa ggacgtcggt ttgcagctca      1560
     gcacagcgtg ggacccggcc atagcgaggt tgaagcagac gcggcggaca cgggacgaag      1620
     aagcgagccc cagtgacgtc acagccagca gccaaaagcg gacgcagccg actcaggatg      1680
     taaacattgc cttatatggc gaagcagaag gctccagtga cgtcacagcc agcagcgcgg      1740
     ctatataacg gcaaggcgac ggcgatacag cagtcatttt accacttgac aatggccaag      1800
     gagaacttgg ccgaaagctc gtgggttcac aaccacttga cgcggctgga agctcgagaa      1860
     gattttatta attca                                                       1875
//
ID   Penelope-28_LMi repbase;    DNA;    INV; 2580 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-28_LMi.
XX
NM   Penelope-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2580
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3435-3435 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(36..440,398..1165,1141..1839,1779..2243)
FT                 /product="Penelope-28_LMi_1p"
FT                 /translation="MKAIEVAERTWVKEEMRHWYKIRDNVSLHLKVCHMCI
FT                 VAFTHPYEFDCFDRNVREDINSIVHQIYLRQHEKLLKLTSDKTLATSEVSV
FT                 ATXPIQKFSDRITNLSSTVITTDELKVLNKGIKYAPHAPSPVNSWTYICSP
FT                 CTITSKQLDVLKVDLELALGQDISTKHLVAHEIKNAHSNFDVLSRNELNTL
FT                 QKFKNKIISDDVIVSKADKSNSLVLMNKSDYVNKVNQFLNNPDFKQLPKDP
FT                 TASFNEQVKATIKSCNSIISENNSRVLVNMNPLAPRLYGLPKLHKDLIPVR
FT                 PVVSSFSAPCYLLARELDYIIKKKTSFKPKFGIKNSIALVDKIKDIQVPPN
FT                 SKLVSFDVTSLFTNIPTDESIGILTDLLHKCKVNPVESHDIITATEHVHNH
FT                 CYRTCVKQNYFQFENKYYNQSDGLAMGSPLSPILSEIFMDHFEQIFLQKEP
FT                 LRCKIGYWFRYVDDVLCLWTGTTRQLDTFLQHLNSQHKKIKFTMELGGSSI
FT                 NFLDLTIDISTKKHLFSIFRKSIVTDTVIPASSQHPHSHKHAAFHSMVHRL
FT                 ISVPLSDSAFQTELQTIKHIASSNGYSPALIDSILNNKKMRKIRTLLYAGQ
FT                 QEQVSSQKNWCVIPYLGKISDQLVKSSEKLVCHPIFRQNFRSIGKKLKSRN
FT                 YRPAFYNTNNISKYLFNSKDKIQPLSQSGVYKITCKHCGKVYVGQSGRAVA
FT                 IRLSEHERSWRLKKTDSTFAEHLLRENHDYDVHCEILHPLKKSRKMTLLEI
FT                 LEINKHLAQDASLVLNDQIQFPFTPLLK"
XX
SQ   Sequence 2580 BP; 896 A; 491 C; 433 G; 759 T; 1 other;
     tactgaacat taaacaagaa gacttcagca gcgcaatgaa ggctatagaa gtcgccgaaa        60
     gaacgtgggt gaaagaagaa atgcgacatt ggtacaaaat tcgtgacaac gtaagtctac       120
     atctaaaggt gtgtcacatg tgtattgtgg ccttcacaca tccgtacgaa ttcgattgtt       180
     ttgatcgtaa tgtgcgtgaa gatattaact ctattgtcca ccaaatttat ctgcgccagc       240
     atgaaaagct gctaaagtta actagtgaca aaacacttgc gacatcggag gtatctgtag       300
     caacaktacc tattcaaaag ttttctgatc gtatcacaaa cttatccagt acagttatta       360
     ctacagacga actaaaagtg ttaaataaag gtattaaata tgctccccat gcaccatcac       420
     cagtaaacag ttggacgtac tgaaagttga tcttgagctc gctctaggac aagacatctc       480
     tacaaaacat ttagtagccc atgaaattaa aaatgctcat tctaattttg atgtattatc       540
     acgcaacgaa cttaatacgt tgcagaagtt taaaaacaaa ataatttcag atgatgtcat       600
     tgtttctaaa gctgacaaat caaacagttt ggtacttatg aacaaaagtg attatgtcaa       660
     caaagtgaac cagttcctta ataatccaga ttttaagcaa ctacctaaag atcctactgc       720
     tagtttcaat gaacaagtta aagccactat aaaatcatgt aacagcatta tatctgaaaa       780
     caacagccga gtgctagtga atatgaaccc cttggctcct agattatatg gtttacctaa       840
     gttacataaa gatctgattc ctgtaaggcc agtagtgtca tcattttctg ctccttgtta       900
     cttactagca agagagctag attacataat taaaaagaaa acaagtttta aaccaaaatt       960
     tggaatcaaa aattccatag ctcttgttga caaaattaaa gacatacagg tcccacctaa      1020
     ttctaaacta gtatcgtttg atgtcaccag tttgtttaca aatattccca ctgatgaaag      1080
     tataggcatc cttactgatc ttttgcataa atgtaaagta aaccctgttg aatcacatga      1140
     cataatcact gctacagaac atgtgtaaag caaaattact tccagtttga aaataagtac      1200
     tacaatcagt ctgatggcct agctatgggt tctccactta gtcccattct atctgagatc      1260
     ttcatggatc attttgagca gattttctta cagaaggaac cactgaggtg caaaattgga      1320
     tactggttca ggtatgtgga tgatgtgctg tgtttatgga ctggtaccac cagacaattg      1380
     gatacctttt tacaacattt aaattcccaa cacaagaaaa ttaagttcac tatggaacta      1440
     ggaggatctt ctataaactt tttggacctt actattgata tcagcacaaa gaaacactta      1500
     ttcagtattt tcagaaaatc catagtaaca gatacagtta tccctgctag ttcccagcat      1560
     ccacacagcc ataaacatgc agctttccac tccatggtcc atcgcctcat atctgttcca      1620
     ttatctgatt ctgcatttca aacagaatta caaacaatca aacatatagc atccagtaat      1680
     ggctatagcc ctgccctgat tgacagtata ctgaataaca agaaaatgag aaaaattaga      1740
     acacttttat atgctggcca gcaagaacaa gtcagtagtc agaaaaactg gtgtgtcatc      1800
     ccatatttag gcaaaatttc agatcaattg gtaaaaagtt aaaatctcga aattacaggc      1860
     ctgcatttta caatacaaac aacatttcaa agtatttatt caatagtaag gacaaaattc      1920
     aacccctatc acagagtggt gtgtacaaga tcacgtgcaa acattgtggg aaagtgtatg      1980
     ttggtcagtc tggcagggct gtagctatta gattgtcaga acacgagaga agctggaggt      2040
     taaaaaagac agattcaacc tttgctgaac atctgctcag agaaaaccat gattacgatg      2100
     tacactgtga gatcctacat cccctgaaga aaagcagaaa gatgacacta ctggaaatat      2160
     tggaaatcaa taaacatttg gctcaggatg ccagtttagt attaaacgat cagatccagt      2220
     tcccctttac acctctactg aaataagttt tattttcaac tttccttttc aacaaaaata      2280
     atcatgtcag ttttgatcct ttacacatac ttattatatt tttatataaa tgttaataac      2340
     tctcataaat atgtacttgc aatgaacttt cctgtgaagt atcgattttc tgtgataaca      2400
     tctttgtaaa tcgtaacatc tttgaaaaca tgtgtactac agtcagttgt cacctgatga      2460
     tggcctaaga agccgaaagc cggtttgtga cgaataaata agttttgcag aacatcagga      2520
     agttgttcct ttttgatatt attatcatgt tctgtcaaga ccgacggaaa aatcaattaa      2580
//
ID   Penelope-29_LMi repbase;    DNA;    INV; 2583 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-29_LMi.
XX
NM   Penelope-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2583
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3436-3436 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(177..446,445..957,969..1472,1460..2359)
FT                 /product="Penelope-29_LMi_1p"
FT                 /translation="MFHSAQANRIYLRMELAMLRERIHQTRRELAVTSSQL
FT                 LSLHLRISNAMQLCDWDKVDRLTFRSMELSAEVACNRQKKFDHLQGRREAQ
FT                 LRDNANTVINLSGKELSREEISVLSKGGNFAVTPSKVPTEDIVANIEAGIR
FT                 MLSPHSADEIRMETARILRKAKPPSSNLSQAERKALRDINADKNITVLSAD
FT                 KGNATVVLKSEDYHRKINDLLDPTTYKKLTKDPTTKVLNATNKLIKKSSIP
FT                 TEDKKHLLKTEAHPQIVWVATSIPLRPIVPLDLRRAARYLASMLQPYIGKT
FT                 DRHIKNSIHFIEKLRDITVSPGDILVSFDIVSLFTMVPVDEALSYIADMFP
FT                 TDIVSLFRHCLSTTYFQYNSEFYEQIEGVAMGSPLSPAIANLFMEFFEHQA
FT                 LQSANKSPSKWYRYVDDTFVIWNHGDEELNDFLGTFFGHLNSINPRIQFTM
FT                 EKEENGQLNFLDVSVIKRADGTLGHKVYRKDTHTDRYLHKDSNHHPRQKRG
FT                 VIKTLVDRANNICEPIYXRDELNHLRTAFKKNGYTDKEIDRALHPRRKGSE
FT                 NKPQQQLSAGKVFLPFIHKITDRIGKVLARFQVQTVFRPTKKISECLRSVK
FT                 DARHPLATPGVYKIPCSCGMVYIGTTKRSVNTRILEHKRNCRLGHTDKSAV
FT                 AEHVFTRGDHEIKFSETSVLARTSHYYTRMYREAIEIQKHHNNFNRKEEGL
FT                 KLDKIWRSTLNQRYDNRLPVIERDDVGQR"
XX
SQ   Sequence 2583 BP; 827 A; 515 C; 584 G; 656 T; 1 other;
     atgaagacgc cggcctgaaa gcctacatct atgattgagc ctctacgggg ggattgtggt        60
     taggtacgac gactgagaat ctacgtaaga agaaaggtca acaactttct tcactcacct       120
     tcttgctacg ttgtcgtgac accgggacag ttccaaagtt tttgaaggtg agaagaatgt       180
     ttcattcagc gcaagccaat cgcatctatc tccgcatgga actagcgatg ctacgggagc       240
     ggattcacca aacacgtcga gaattggcgg taactagtag tcaactatta agtctccatt       300
     tacgtattag caatgcaatg cagctgtgtg attgggataa ggtggacaga ctaacattta       360
     gatctatgga acttagtgca gaagtggctt gcaatagaca gaagaagttt gatcatttac       420
     agggtagacg ggaagcccaa ttaagataat gccaacacgg tgattaattt gtccgggaaa       480
     gaactgtcga gagaagaaat ttctgttctc tcgaaaggag gaaattttgc agtcactcca       540
     tcaaaggttc ccacggagga tattgttgcc aatatagagg cagggattcg catgttatca       600
     ccacattctg ccgatgaaat taggatggaa acagccagga tactacgtaa agctaagcca       660
     cctagcagca atttgtctca agcagaacgg aaagcattgc gggacatcaa tgcggacaag       720
     aatattactg tactttctgc tgataagggt aatgccaccg ttgtattgaa gagcgaggat       780
     taccatagga agatcaatga cctccttgat cctaccactt ataaaaagct gacaaaggat       840
     cctactacaa aagtgttaaa tgctaccaac aagttaataa aaaagtcttc catcccaaca       900
     gaggataaaa aacatcttct caaaacggaa gcgcaccccc aaattgtatg ggttgcctaa       960
     gtacataaac cagtatcccg ttaagaccaa ttgtgccatt ggatctccga cgcgctgctc      1020
     gatatctcgc ctccatgttg caaccataca taggcaaaac tgataggcac atcaaaaatt      1080
     ctattcattt tatagaaaaa ttgagagata ttactgtcag tccaggtgat attcttgtca      1140
     gttttgatat agtatctttg ttcaccatgg tcccagtaga cgaagctctt tcttatatag      1200
     ctgacatgtt tccaactgat atagtatctt tattccgaca ctgcctatcc acgacttatt      1260
     ttcaatacaa cagtgaattt tatgagcaaa ttgaaggggt ggccatgggt agtcctttga      1320
     gtccagctat cgctaattta tttatggaat tttttgaaca tcaagcgctg cagtcggcca      1380
     acaaaagtcc ctcaaagtgg taccggtacg tggatgatac ttttgtgata tggaatcacg      1440
     gtgatgaaga attaaatgat tttttgggca cctgaatagt attaatccgc ggatacaatt      1500
     tactatggag aaagaggaaa acggacagtt gaattttttg gatgtatcgg taatcaaacg      1560
     ggcagatggg accttggggc ataaggtata cagaaaagac acccacaccg atcgttatct      1620
     tcataaggat tcgaaccatc atcctaggca gaagagaggt gtcattaaaa cattggtgga      1680
     tcgagctaat aatatctgtg agcctattta tstgagagat gaattaaacc atttgcgaac      1740
     agcgttcaag aaaaatggat acaccgataa agagatagat cgagctctcc atccaagaag      1800
     aaaagggtcc gaaaacaagc cacaacaaca actgtcggcc ggaaaagttt ttcttccttt      1860
     catccacaaa attacggacc gtattgggaa agttttggcc aggtttcaag tgcagaccgt      1920
     ctttagacct accaagaaaa ttagcgaatg cttacgatcg gtgaaagacg cacgacatcc      1980
     cctagcaacg cctggggtgt ataaaattcc ctgtagctgt ggcatggtgt atataggaac      2040
     aacaaaaagg agtgttaata ctcgcatatt ggaacataaa aggaattgtc gtctgggtca      2100
     cacagacaag tcagctgtgg cagagcatgt ttttacacgt ggtgaccatg aaataaaatt      2160
     tagtgaaacg agcgtgctag ccaggacgtc gcattattac acacggatgt acagagaagc      2220
     tatagaaata cagaaacacc acaataattt taacaggaaa gaagaaggtt tgaaattaga      2280
     taagatttgg cggtcaactt tgaaccaaag atatgacaat cgattacctg taatcgagag      2340
     agatgacgtt ggtcaaagat agcttcatag tcggcagcac gtgacaagtg gtggcgccat      2400
     ctatgccctc tatataagca ggacctccag cgcctagtag gcagtcgtcg actcaccctt      2460
     gaagatgttg cccgcagtag gcaacgaaac gtcgggagta agaagtttta ttgatggacc      2520
     acggcaactt agcccggaag ttttaattaa tgaagacgcc ggccgtgaaa gcctacattc      2580
     tat                                                                    2583
//
ID   Penelope-2_AAe repbase;    DNA;    INV; 3832 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3832
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1436-1436 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. Sequences 1-1479 and 2354-3832 are
CC   terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1397..1813,1767..3560)
FT                 /product="Penelope-2_AAe_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="NFPHPAWCALLFLPTSGVSIRVRSRPVQYVSNKRKHT
FT                 FECYRNRQQHKLEKLKTKQLTQNTPCDNWVLNCTDETIPDFVTRSLQLGSG
FT                 YNNPNPHSAPYVRVLSEIESAIQRNPSADVIRHDVIKCHHQPHPLHQTTVP
FT                 SNAIINHIHYTKQPFHDKHENIRKEIQKSKKYLRDRDDLVVTKADKGKTVV
FT                 VMKRDEYEEKMQALVNDSETYEPLASDPTKKTLKKINTLIDHWHENGFIEY
FT                 SERTKLKVFNCNPPRVYGLPKTHKDGRPLRIINSAIGTATYKMAKFLSKIL
FT                 NHVTGKTEHHIVNSFQFAEEMREQQITNQDVLFSLDVVSLFTNVPVDFALE
FT                 SIRLRWEEIEEHTKLDEESFTEMVKIVLDSTYFQYKGKFYKQKFGIPMGSP
FT                 ISPVVANIVLERIEKDALEKLRTRGIVPRFFKRYVDDCLLCARKEEVEAIL
FT                 NVFNGFHQRLQFTVELEVEGKLKFLDMILRREDNTITTEWFPKDADGRYLD
FT                 FTSVSPFIHKNNTIIALVDRALKLTHAKYRVNTLKTVKQILTGNNYPCFLV
FT                 EKVIRERLHKMYNTLQDKENATNNFITIPYIEGLGEKLSRYLRQHDFKVAY
FT                 KPVDKIKDVLFTKTKDKISKDKNINVVYEIPCGACEKSYVGETSQFLCKRL
FT                 SQHKYNVKTKNISGTGLSQHTIEEGHIFDFDKTKILDKVTNSYTRLITETF
FT                 HIKIRGDDNVVNKQKDSANFKTAYNSIITKLKSITNT"
FT   CDS           join(1789..1445,1565..273)
FT                 /product="Penelope-2_AAe_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MWLMMAFDHIVTDDVSGWIALYGRFYLREHSHIRSRM
FT                 GIGIVVSTSKLQRSCYEIRYSFVCAIKHPIVARCILGELFCFQLLQFVLLT
FT                 VSVAFKRVFSLIGNVLHRSTSHSNRYAAVLFSASPVCVVDGFGSIQTCVFA
FT                 YWKRTAPVDFALESIRLRWEEIEEHTKLDEESFTEMVKIVLDSTYFQYKGK
FT                 FYKQKFGIPMGSPISPVVANIVLERIEKDALEKLRTRGIVPRFFKRYVDDC
FT                 LLCARKEEVEAILNVFNGFHQRLQFTVELEVEGKLKFLDMILRREDNTITT
FT                 EWFPKDADGRYLDFTSVSPFIHKNNTIIALVDRALKLTHAKYRVNTLKTVK
FT                 QILTGNNYPCFLVEKVIRERLHKMYNTLQDKENATNNFITIPYIEGLGEKL
FT                 SRYLRQHDFKVAYKPVDKIKDVLFTKTKDKISKDKNINVVYEIPCGACEKS
FT                 YVGETSQFLCKRLSQHKYNVKTKNISGTGLSQHTIEEGHIFDFDKTKILDK
FT                 VTNSYTRLITETFHIKIRGDDNVVNKQKDSANFKTAYNSIITKLKSITNT"
XX
SQ   Sequence 3832 BP; 1226 A; 755 C; 727 G; 1124 T; 0 other;
     atgtgtcagt gaatcatcga tttgttttcg gcgagaatta acgtacaaat aaattgccag        60
     attgtccgga cgtttcggtc gttttactgg cctacgacca tcttctgcgg actctaaaat       120
     atatttttta acatttagaa cacatcaaaa acataaaatt aacaccttac aatcttctag       180
     ccgtttgttt acagttggac ggccataact tttacaaaca tcataataca taaatttcta       240
     catacaacat acatacaaat atcttctggt catgtgttgg taatagattt aagcttagtt       300
     ataatagagt tgtacgccgt cttaaaattg gcagagtctt tctgtttgtt tacaacatta       360
     tcatcgcctc gtatcttaat gtgaaaagtt tctgttatta atctagtgta gctatttgta       420
     actttgtcaa gtatttttgt cttgtcaaag tcgaaaatat gtccttcttc tatagtgtgt       480
     tgtgacaatc ctgtaccaga tatgtttttt gtttttacat tatacttatg ttgacttaga       540
     cgtttacaca gaaattgact tgtttcacca acgtacgatt tttcacatgc accacaagga       600
     atctcatata ctacatttat gtttttgtct ttagatattt tgtctttagt ttttgtaaat       660
     agtacatctt taattttgtc aactggttta taagccacct taaagtcgtg ttgtcttaga       720
     tatctagata gcttttcacc tagtccttca atatatggta tcgttataaa attgttcgta       780
     gcgttttcct tgtcttgtag tgtattgtac attttgtgta gtctttccct aataactttt       840
     tctacaagga aacacgggta gttgtttcct gtgagaattt gtttaaccgt tttcaacgtg       900
     tttacccgat acttagcatg agttaacttt aaggctctat ctactagtgc tattattgta       960
     ttgtttttgt gtatgaaagg actaacagag gtaaaatcta aatatctacc gtctgcatct      1020
     ttcgggaacc actccgttgt gatcgtgttg tcttcgcgcc gcagaatcat gtccagaaat      1080
     ttcagttttc cttctacttc taattcaaca gtgaactgca gccgttgatg gaagccattg      1140
     aatacgttca aaattgcctc cacttcctcc tttcgcgcac acaacaaaca atcatccacg      1200
     taccgcttga agaaacgagg tacaattccc cgagtacgca gcttctccaa cgcatctttc      1260
     tctattcgct ctagtacgat gtttgctacc accggtgata ttggcgaacc catcgggatg      1320
     ccaaatttct gcttataaaa tttccccttg tactggaaat aggtagagtc cagtacaatc      1380
     tttaccatct cggtgaaact ttcctcatcc agcttggtgt gctcttctat ttcttcccac      1440
     ctcaggcgta tcgattcgag tgcgaagtcg accggtgcag tacgtttcca ataagcgaaa      1500
     acacacgttt gaatgctacc gaaaccgtca acaacacaaa ctggagaagc tgaaaacaaa      1560
     acagctcacc caaaatacac cgtgcgacaa ttgggtgctt aattgcacag acgaaactat      1620
     acctgatttc gtaacacgat cgctgcagct tggaagtgga tacaacaatc ccaatcccca      1680
     ttcggctccg tatgtgagag tgctctcgga gatagaatct gccatacaac gcaatccatc      1740
     cgctgacgtc atccgtcacg atgtgatcaa atgccatcat caaccacatc cactacacca      1800
     aacaaccgtt ccatgataaa catgagaata tacggaaaga gatacaaaag tccaaaaagt      1860
     atctcaggga ccgagacgat ctcgtcgtca ccaaagcgga taaggggaaa acggtcgtag      1920
     tgatgaaacg tgatgagtat gaggaaaaaa tgcaagcttt ggtcaacgac agcgaaacgt      1980
     atgagcctct tgcaagcgat cctaccaaga agacgttgaa gaagatcaac acgctcattg      2040
     atcattggca tgagaatggt ttcattgagt attctgagag aaccaagttg aaagttttca      2100
     actgtaatcc accccgtgtt tacggtctgc ccaaaaccca caaagacggc agaccactga      2160
     gaattataaa ttccgcaatc gggacagcga cctataagat ggctaagttt ttgtccaaaa      2220
     tcctcaacca tgtcactgga aaaactgaac atcatatagt gaacagtttt cagtttgctg      2280
     aagagatgcg tgaacagcaa ataaccaacc aggatgttct gttctctcta gacgtggttt      2340
     ctcttttcac caatgtaccg gtcgacttcg cactcgaatc gatacgcctg aggtgggaag      2400
     aaatagaaga gcacaccaag ctggatgagg aaagtttcac cgagatggta aagattgtac      2460
     tggactctac ctatttccag tacaagggga aattttataa gcagaaattt ggcatcccga      2520
     tgggttcgcc aatatcaccg gtggtagcaa acatcgtact agagcgaata gagaaagatg      2580
     cgttggagaa gctgcgtact cggggaattg tacctcgttt cttcaagcgg tacgtggatg      2640
     attgtttgtt gtgtgcgcga aaggaggaag tggaggcaat tttgaacgta ttcaatggct      2700
     tccatcaacg gctgcagttc actgttgaat tagaagtaga aggaaaactg aaatttctgg      2760
     acatgattct gcggcgcgaa gacaacacga tcacaacgga gtggttcccg aaagatgcag      2820
     acggtagata tttagatttt acctctgtta gtcctttcat acacaaaaac aatacaataa      2880
     tagcactagt agatagagcc ttaaagttaa ctcatgctaa gtatcgggta aacacgttga      2940
     aaacggttaa acaaattctc acaggaaaca actacccgtg tttccttgta gaaaaagtta      3000
     ttagggaaag actacacaaa atgtacaata cactacaaga caaggaaaac gctacgaaca      3060
     attttataac gataccatat attgaaggac taggtgaaaa gctatctaga tatctaagac      3120
     aacacgactt taaggtggct tataaaccag ttgacaaaat taaagatgta ctatttacaa      3180
     aaactaaaga caaaatatct aaagacaaaa acataaatgt agtatatgag attccttgtg      3240
     gtgcatgtga aaaatcgtac gttggtgaaa caagtcaatt tctgtgtaaa cgtctaagtc      3300
     aacataagta taatgtaaaa acaaaaaaca tatctggtac aggattgtca caacacacta      3360
     tagaagaagg acatattttc gactttgaca agacaaaaat acttgacaaa gttacaaata      3420
     gctacactag attaataaca gaaacttttc acattaagat acgaggcgat gataatgttg      3480
     taaacaaaca gaaagactct gccaatttta agacggcgta caactctatt ataactaagc      3540
     ttaaatctat taccaacaca tgaccagaag atatttgtat gtatgttgta tgtagaaatt      3600
     tatgtattat gatgtttgta aaagttatgg ccgtccaact gtaaacaaac ggctagaaga      3660
     ttgtaaggtg ttaattttat gtttttgatg tgttctaaat gttaaaaaat atattttaga      3720
     gtccgcagaa gatggtcgta ggccagtaaa acgaccgaaa cgtccggaca atctggcaat      3780
     ttatttgtac gttaattctc gccgaaaaca aatcgatgat tcactgacac at              3832
//
ID   Penelope-2_AEc repbase;    DNA;    INV; 2695 BP.
XX
AC   .
XX
DT   22-OCT-2011 (Rel. 19.03, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Panamanian leafcutter ant
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_AEc.
XX
NM   Penelope-2_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-2695
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 745-745 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           730..2304
FT                 /product="Penelope-2_AEc_1p"
FT                 /translation="MIERNLNNMLKKWHQKGFISDKELWSLRSSDSILPKA
FT                 YALPKIHKEGVPFRIIVSSINTALYSLAGYLQDIISENIPPAKSRIKNSFE
FT                 FHNKLTGMTIDKTEIMVSLDVTSLFTNVPLDVALDGLVGRWDSIKGATNIP
FT                 KNEFINAVKFVLTSTYFTFNGIIYKQTFGTPMGSPLSPIISDIVMEDLEER
FT                 VLNSLQFRVSAYFRYVDDVFMIAPKDKVTQILNSFNEQHDRLKFTIEYEEN
FT                 HCLNFLDLSVINKDNTIILDWYHKKTFSGRYLSFYSNHPACHKIGTIYSLV
FT                 DRAILLSNSTFYNKNIEFIIENLKDNGYPLGMIFYYINKRIKSLACKKSTM
FT                 VNNTSSDNVDTDGVLREIMVFPYIRSISNKITKSINKSKNMIGYRCLNKLN
FT                 KFIKVHKDKNQHDKNNNVIYKVNCNNCDASYVGQTKRQLQTRIKEHRNNIK
FT                 LDQSKYSVISKHITETNHDFDWEKVSILDFEKNYRKRNISEMIHIKEQKNG
FT                 LNLMKDTELLDNSYFNILDDIREHKWSQF"
XX
SQ   Sequence 2695 BP; 972 A; 392 C; 422 G; 909 T; 0 other;
     ttctattaat taatgataat attgcctttt tattaaaaca gtggattgat tataattata        60
     gattaattga ggcaatttct aaattgaaat ttttaagaca ttgtaaagag tatgaagtca       120
     ttccagttca tttaaatcat atgtttagga attcgttagg tttacatcat catagaacga       180
     atattaaata taaaagatca cttttctttt taaaaaagaa actacttaat attgaaattt       240
     ctgatctcta caaaacgatt tttgcagaag ggattagcct caattggact cttattaact       300
     ctttacctga ccatctgtgg caacacatca tcacaattct tttttcaaat gtgaaagaag       360
     actattttta aaacatagaa agaagttttg ttggttaatg gcgaaaaaag agtttgatga       420
     ttccaaagat acccaaccaa tacgtttttt ctatattggg aacaacaaag aagaaactaa       480
     aaggttaaag tttaggcaaa atattccttt gagttgattc taatgaatct ttagtgacca       540
     tcaatatcga acctgacaaa tttagaggcg tttcttttaa tccattagaa tgaactaaca       600
     aaaaatggtt cgtcaattta agtgagacaa gcatttctgc atatgtaaca aatttattac       660
     aacagagtag caattttaat ctcctagatt ctaacaataa agagaaatca atcagggaat       720
     tctccggcaa tgattgaaag aaatctgaat aatatgttaa aaaaatggca tcagaaggga       780
     ttcatttcag ataaggaatt gtggagtctt cggtcaagtg attccatctt gccgaaggca       840
     tatgctttac caaaaataca caaggaaggc gttcccttta gaattattgt ttcttcaatc       900
     aacacagctc tatattcgtt agctggttat ttgcaagata ttatctctga gaatatccct       960
     cctgcaaaaa gtagaataaa aaatagcttt gaatttcaca ataaattaac tggaatgacg      1020
     attgacaaaa cagagataat ggtttcatta gatgttactt ctctgttcac taatgttcca      1080
     ttggatgttg cgctggatgg attggtggga aggtgggact ccattaaagg tgccacaaac      1140
     attccaaaga atgaattcat taatgcggtc aaatttgtct taacatcgac atattttact      1200
     tttaatggga ttatttacaa acaaactttt ggcacaccta tgggttcccc cctttcccct      1260
     atcatttctg acattgtcat ggaggatttg gaagagagag tgttaaattc tttacaattt      1320
     cgggtttctg catattttag atatgttgat gatgtcttta tgattgcacc taaagataag      1380
     gtcactcaaa ttttaaattc atttaatgaa cagcatgata gacttaaatt cactattgaa      1440
     tatgaggaaa accattgtct gaattttttg gatttatcgg tcatcaataa agacaatact      1500
     attattttag attggtacca taaaaaaacg ttctcgggca ggtatttatc gttctattcg      1560
     aatcatcccg catgtcataa gatagggacc atatatagct tagttgatag agcgatctta      1620
     ttgtcaaatt ctacattcta taataagaac atagaattta taatagagaa tttgaaggat      1680
     aacggttatc ctttaggaat gattttttat tatattaaca aaaggatcaa aagtttggct      1740
     tgtaaaaaat ccacgatggt taataacacc agctcagata acgttgacac tgatggagtt      1800
     ttgagagaga taatggtttt cccatatata agatctattt ctaataaaat tactaagtct      1860
     attaataaat ccaaaaacat gattggctat aggtgcttaa acaagcttaa taaatttatt      1920
     aaagttcata aggacaaaaa tcaacatgat aaaaataata atgtcatata taaagtaaat      1980
     tgtaataact gcgatgcatc gtatgttggc caaacgaaga gacaattgca gacaagaatt      2040
     aaagaacatc gcaataatat aaaattagac cagtccaagt actcagtaat ctcgaaacat      2100
     atcacggaaa ctaatcacga ctttgattgg gaaaaagtta gtattcttga ttttgaaaag      2160
     aattatcgta aaagaaatat ttctgaaatg atacacatta aagaacaaaa aaacggttta      2220
     aatttaatga aagatactga gttattggat aactcttatt ttaacatact tgacgatata      2280
     cgagaacata aatggtcaca gttttgaaca gacttgtttt tacattcgat tttattgact      2340
     tacttttatt tgacctacac ttcacattag ttaattttca aacgagcaac agtcagtatc      2400
     tttattgtac ttaactggat ctttgattga gagtttagat tacagtattt tatataaatt      2460
     accgtaagtt attatttgat tctgtacctc tttttcacac taataatata ttatcttaat      2520
     aaatctattt gttctacaga atatcataaa atactcgtaa ttaaagaatt ctcaaatcgt      2580
     ttgatacaag tctgtgacaa actggattct cgatctcaac cgaggaattt ggcaaatcta      2640
     ttttatcgat gaacataatt gatctactgt tgactgaagt atccaaatgt tccta           2695
//
ID   Penelope-2_BTa repbase;    DNA;    INV; 4203 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_BTa.
XX
NM   Penelope-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4203
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 965-965 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           1818..4109
FT                 /product="Penelope-2_BTa_1p"
FT                 /translation="MQKEISVKYGVRAKLEADNYERHLCLMKVIDYKLWCN
FT                 LDRLIIERTKYEISKKEFGLRRKKQKLLQDKHIKASSVAKLPGKITNSGES
FT                 ELCRVKKQDDTSEVINLSGKKLSTSELRLLGNGLKSCFRHSNEPIDFIVDI
FT                 EVALKGKSELEKTEVRRACMPIMEKINQESKKTQVIKSNVKIERAIKSIKR
FT                 KNLMVTKSDKGNNVVVLDKEDYIERCENALKTSLFEEVKKDPIRTYEKEVR
FT                 EALKSTTVMTVNEAKYLTSDNKQFPYMYGLPKLHKPGKDIRPIINCRDCPF
FT                 YKLSKWLLNRFKALEAYETRSVKNSIELAKTLENEEVQDDEVLVSFDVKSL
FT                 FPSVPVDKALQLLSKWLKNSGLMKQKVKEFLRLTEICTSQTAFRFNNKMYR
FT                 QVSGLFMGNPISPFLSDLFMSNLEIERIVFRPDMFLLWRRYVDDVLSKIKK
FT                 GQQTLALEYLNHLEESIEFTIEEEKDQKLPFLDLLLDRSNNKIEFDIYRKP
FT                 TDTGNYIKGNAHNPKVHKTAAFRSMAYRMMKIPLSDENRKREENNIISIAK
FT                 KNHFQEEEIRQVINKVKRKVRMNNLTTLKGETKDKRYRKFTFHPKWGPKFK
FT                 KVFQKLDIELSFTNNHNLMNRFSKKIETTEKDDSAKPGIYEINCNTCHKCY
FT                 VGQTKRSLKIRGQEHVRNMKNREITRSAVAHHFWSTGHNINFEPRLLKEVK
FT                 EQKLLDVWENIFIYKKRNNNFNFDKSGATNVLFKFIDDKHDNPANWRNELR
FT                 GKQTPSVAAEDGS"
XX
SQ   Sequence 4203 BP; 1373 A; 757 C; 806 G; 1267 T; 0 other;
     ttcttcaaaa aattatttaa aaacacaaag ataaaacaca ctcacttgcg taaaattgta        60
     taaaataata accgggacgc gtttcgggag cttagctccc atcctcagcc gcgactgaag       120
     gtgtttgttt acctcgcagc tcattccgcc aatttgccgg gttgtcatgt ttgtcgtcga       180
     taaatttgaa caacacattc gtggcgcccg actcgtcaaa attgaaattg ttgttccgct       240
     ttttgtaaat gaaaatattc tcccatacat ctaacagttt ttgctccttt acttccttga       300
     ggagcctggg ttcaaaatta atattgtgtc ctgtggacca aaaatggtgt gccaccgccg       360
     agcgtgtgat ttctctgttt ttcatattcc tcacatgctc ttggcccctg attttcaatg       420
     atcttttcgt ttggcccacg taacatttgt ggcaagtgtt gcagttgatt tcatatatcc       480
     caggttttgc agagtcatct ttttctgttg tttctatttt cttgctaaat ctgttcatta       540
     aattgtgatt gtttgtgaag cttagctcaa tgtccaattt ttgaaaaact tttttgaatt       600
     ttggacccca tttgggatgg aaagtaaatt ttctatacct tttatctttg gtttctcctt       660
     tcaaagtcgt caagttgttc atcctcactt tccttttcac cttgtttatg acttgcctga       720
     tttcctcctc ctggaaatga tttttcttgg caatactgat gatgttgttt tcttctctct       780
     ttctgttctc atcactgaga ggaattttca tcatacggta tgccatgctc ctaaacgctg       840
     ctgttttatg aactttaggg ttgtgtgcat tacctttgat ataattccct gtatcagtag       900
     gttttctgta aatgtcgaac tcgatcttat tatttgatct atccaataaa aggtcaagaa       960
     acggtaattt ttggtctttt tcttcttcta ttgtgaattc aatagattcc tcgaggtggt      1020
     ttaaatactc taaggccaag gtttgctgcc ctttctttat tttggatagt acatcatcaa      1080
     cgtacctacg ccataacaaa aacatatctg gccgaaaaac tatcctctcg atttccaagt      1140
     tactcataaa caagtccgac aaaaatggtg agatcgggtt ccccatgaat aggccactta      1200
     cttgtctgta cattttgttg ttaaatctga acgctgtttg actggtacaa atttctgtca      1260
     atcttaaaaa ctcttttact ttttgcttca ttaaaccact attttttaac cacttgctca      1320
     acagttgaag tgctttatcc actggcacac tgggaaataa cgatttcacg tcaaacgaca      1380
     ccaacacctc atcatcttgc acctcctcat tctccagggt tttcgctagc tcaatcgagt      1440
     ttttcacact ccttgtttca tatgcttcca atgccttaaa tctgttcaat aaccatttgg      1500
     ataatttata gaacgggcaa tccctgcaat tgatgatggg cctaatatct ttacccggtt      1560
     tgtgaagttt tggtagacca tacatgtaag gaaactgctt gttatcacta gtcaagtact      1620
     tagcttcatt cactgtcatc actgtagtac tttttaacgc ctctcgaact tccttttcgt      1680
     aagtccgtat tggatctttt ttaacttctt caaataaact agtttttagg gcattttcac      1740
     atctttctat ataatcttct ttatctaaaa ctaccacatt attgccttta tccgactttg      1800
     tgaccataag gaaaattatg caaaaggaaa tttctgttaa atatggagta agggccaagt      1860
     tggaagcaga caattatgag agacacctat gtctaatgaa agtcatagac tacaagttat      1920
     ggtgtaatct tgatcgttta atcattgaaa gaacaaagta tgaaattagc aaaaaggaat      1980
     ttgggttgag gagaaaaaag caaaaactgt tgcaagataa acatataaaa gctagcagtg      2040
     ttgccaaatt accaggaaag attacaaatt ctggagaaag tgagttgtgc cgtgttaaaa      2100
     aacaggatga caccagtgaa gtgattaatt tatccgggaa gaaactgagc accagtgagc      2160
     taagattgct aggaaatggt ctaaagagtt gtttcagaca ttcaaatgaa cccatcgatt      2220
     ttatagtgga catagaagta gcccttaaag gtaaatctga actggaaaaa accgaagttc      2280
     gcagagcctg tatgccgatc atggagaaaa taaatcagga gtccaaaaaa acccaggtta      2340
     ttaaatctaa tgtaaaaata gaaagggcaa taaaatcaat taaaaggaaa aatcttatgg      2400
     tcacaaagtc ggataaaggc aataatgtgg tagttttaga taaagaagat tatatagaaa      2460
     gatgtgaaaa tgccctaaaa actagtttat ttgaagaagt taaaaaagat ccaatacgga      2520
     cttacgaaaa ggaagttcga gaggcgttaa aaagtactac agtgatgaca gtgaatgaag      2580
     ctaagtactt gactagtgat aacaagcagt ttccttacat gtatggtcta ccaaaacttc      2640
     acaaaccggg taaagatatt aggcccatca tcaattgcag ggattgcccg ttctataaat      2700
     tatccaaatg gttattgaac agatttaagg cattggaagc atatgaaaca aggagtgtga      2760
     aaaactcgat tgagctagcg aaaaccctgg agaatgagga ggtgcaagat gatgaggtgt      2820
     tggtgtcgtt tgacgtgaaa tcgttatttc ccagtgtgcc agtggataaa gcacttcaac      2880
     tgttgagcaa gtggttaaaa aatagtggtt taatgaagca aaaagtaaaa gagtttttaa      2940
     gattgacaga aatttgtacc agtcaaacag cgttcagatt taacaacaaa atgtacagac      3000
     aagtaagtgg cctattcatg gggaacccga tctcaccatt tttgtcggac ttgtttatga      3060
     gtaacttgga aatcgagagg atagtttttc ggccagatat gtttttgtta tggcgtaggt      3120
     acgttgatga tgtactatcc aaaataaaga aagggcagca aaccttggcc ttagagtatt      3180
     taaaccacct cgaggaatct attgaattca caatagaaga agaaaaagac caaaaattac      3240
     cgtttcttga ccttttattg gatagatcaa ataataagat cgagttcgac atttacagaa      3300
     aacctactga tacagggaat tatatcaaag gtaatgcaca caaccctaaa gttcataaaa      3360
     cagcagcgtt taggagcatg gcataccgta tgatgaaaat tcctctcagt gatgagaaca      3420
     gaaagagaga agaaaacaac atcatcagta ttgccaagaa aaatcatttc caggaggagg      3480
     aaatcaggca agtcataaac aaggtgaaaa ggaaagtgag gatgaacaac ttgacgactt      3540
     tgaaaggaga aaccaaagat aaaaggtata gaaaatttac tttccatccc aaatggggtc      3600
     caaaattcaa aaaagttttt caaaaattgg acattgagct aagcttcaca aacaatcaca      3660
     atttaatgaa cagatttagc aagaaaatag aaacaacaga aaaagatgac tctgcaaaac      3720
     ctgggatata tgaaatcaac tgcaacactt gccacaaatg ttacgtgggc caaacgaaaa      3780
     gatcattgaa aatcaggggc caagagcatg tgaggaatat gaaaaacaga gaaatcacac      3840
     gctcggcggt ggcacaccat ttttggtcca caggacacaa tattaatttt gaacccaggc      3900
     tcctcaagga agtaaaggag caaaaactgt tagatgtatg ggagaatatt ttcatttaca      3960
     aaaagcggaa caacaatttc aattttgaca agtcgggcgc cacgaatgtg ttgttcaaat      4020
     ttatcgacga caaacatgac aacccggcaa attggcggaa tgagctgcga ggtaaacaaa      4080
     caccttcagt cgcggctgag gatgggagct aagctcccga aacgcgtccc ggttattatt      4140
     ttatacaatt ttacgcaagt gagtgtgttt tatctttgtg tttttaaata attttttaaa      4200
     gaa                                                                    4203
//
ID   Penelope-2_CoFl repbase;    DNA;    INV; 2784 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_CoFl.
XX
NM   Penelope-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2784
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2407-2407 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. The 5'-terminus is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           174..2363
FT                 /product="Penelope-2_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MSVLKRNIHTIRQKINNLYPNNLSVKSFISSIYFNNR
FT                 YKKHKLNRTYNKKFLSIQKSCNQNLHNNNNKNDKMFRNLTDLHVPENVKNC
FT                 VALGPKFALKTQSLSKSEIFQTIKNVEYSLQKINDLNSEIKSKIRTRITQA
FT                 IKMCNNKKLRLDNTERTNTYNLKCTRAFLRENKDIMFTRSDKGNVTVCLDK
FT                 NVYVQNMEAMLNDKTTYLMVNKNPLNSLQSEVHKILTKLNDSEFLKYKYHN
FT                 NQLTQTNTNLSRCYGLPKIHKPSLSFRPIISSINSPTHTLASTLYNSLSKV
FT                 FEKPSSHLNNSVELIKQIRNLKIPENYIFISLDVISLFTNISLESVINSLE
FT                 KRYMQIHRLSKIPYHEIIECTKFLFNNVYFTFNKKFYKQIFGSPMGSPVSP
FT                 LFADLVLEDLEMEALRLLKENHNCVPFIYKRYVDDTLICVHKDQAELFLQI
FT                 FNEQDNHLKFTCEVEKNNCINFLDITITHKNLKITTNWYVKPISSNRIINF
FT                 NSNHPRSLKVNAVYGLVDRAILLSDKSFHRKNILMAKRILRDNDYTELFIQ
FT                 KYIKKRLHQIKNTNNDNNFLLNDNLSAKIKISIPYNPLFFKFCSKTLKKLN
FT                 IQFYPTIQNKLDSVIILGKDKIDKLDQTNVVYHFSCDSCSASYVGETKRAL
FT                 KKRLNEHKSTKKDELVVASHMKEFNHNFNFSQTKILDHEPNRQKRLISEML
FT                 HVHSTKQTINKKEDTLFLNNIYKVLISNLF"
XX
SQ   Sequence 2784 BP; 1098 A; 468 C; 350 G; 868 T; 0 other;
     tttctaagaa agtgtaggac acaaaattat ttgcctaaca cattgaacat ctaaaaaggt        60
     accttaataa ctttttcttt cacaacaagt cgtccaataa ctttttcaaa aaacgaatat       120
     actcttttac ctacagttta ctcaatattg aaattgatga ttgttacgca catatgtccg       180
     ttcttaaaag aaatattcac accattagac aaaaaattaa taatttatat cctaataatt       240
     tatcagttaa aagcttcata agcagtatat attttaacaa tagatataaa aaacataaac       300
     taaatcgtac gtataataaa aaatttttat ctatacaaaa atcatgtaac caaaacctcc       360
     acaataataa caacaaaaat gacaaaatgt tccgaaatct aacagatctt catgtaccgg       420
     aaaatgttaa aaattgcgta gctttaggac caaaatttgc gttaaaaaca caatctttat       480
     cgaagagtga aatttttcaa acaattaaga atgtagaata tagtttgcaa aaaatcaacg       540
     atcttaatag tgaaataaaa agtaaaataa gaacaagaat cacgcaagcc ataaaaatgt       600
     gtaataacaa aaaattaaga ctagataaca ctgaacgaac aaatacttat aatttaaaat       660
     gtacaagagc gttccttaga gagaataaag atattatgtt tactcgttca gataaaggaa       720
     atgtaacggt ttgccttgac aaaaacgtat acgtacagaa catggaggcg atgttaaacg       780
     ataaaaccac gtacctaatg gtaaataaga atccattaaa tagtttacaa tcagaagttc       840
     acaaaatttt aacgaaactg aacgacagcg aatttttaaa atataagtac cataacaatc       900
     aattaacaca aactaataca aatttatcta gatgttatgg gttgccaaaa atacataaac       960
     cttctctttc atttagacct attatttcat cgattaattc tcctacacac acactcgcct      1020
     caaccctcta taattctctt tcaaaagttt ttgaaaaacc ttcttcacat ttgaataata      1080
     gcgttgaact tataaaacaa attagaaatc ttaaaatacc ggaaaattat atttttattt      1140
     ctttagatgt tatttctcta tttaccaaca tttcgttaga atcagtcata aatagtttgg      1200
     aaaaaagata catgcaaatc cacagattat cgaaaattcc ctatcatgaa atcatagaat      1260
     gtacaaaatt tttattcaac aatgtttact tcacttttaa taaaaaattt tataaacaga      1320
     tttttggcag cccaatgggt tctcctgtct ctccactatt tgctgattta gttttagaag      1380
     atcttgagat ggaagccctg cgcttgttaa aagaaaatca taattgcgtt ccttttatat      1440
     ataaaagata cgtcgatgac actctcatat gtgtacacaa agatcaggca gaactatttt      1500
     tacagatttt taatgaacaa gacaatcact tgaaattcac ttgcgaagta gagaaaaaca      1560
     attgtataaa tttcttagac attacaatta cacataaaaa cttgaaaata accactaatt      1620
     ggtatgttaa gccaatttca tccaacagaa taattaattt taattctaac catccccgat      1680
     cgttaaaagt caatgctgta tacggtttgg ttgatcgagc cattctttta tctgataaat      1740
     ccttccacag gaagaatatt ctcatggcta aaagaatttt acgcgataat gactatactg      1800
     aactttttat acaaaaatac atcaagaaaa gacttcacca aataaaaaat actaataatg      1860
     ataataactt tttactaaat gacaatctaa gtgctaaaat aaaaatttct atcccttaca      1920
     acccgttatt tttcaaattt tgttcaaaaa ctttgaaaaa attaaatata caattttacc      1980
     ctactattca aaacaaattg gacagtgtta tcattcttgg aaaggacaaa attgataagc      2040
     tcgatcaaac caatgtcgtg tatcatttct cttgcgattc ttgctctgca tcatacgtag      2100
     gtgagacaaa gagagcattg aaaaaacggc tgaacgaaca caaaagtaca aagaaagatg      2160
     aacttgttgt cgcttcacac atgaaagaat tcaaccataa ctttaatttt tctcaaacca      2220
     aaattctaga tcatgaacca aatagacaaa aaagattaat atcagaaatg ctacacgtac      2280
     actcgactaa acaaacaata aataaaaaag aggatacctt atttctcaat aacatatata      2340
     aagttcttat aagtaatctc ttttaaatac gtacacacgt tatctatatt cgcaagaaac      2400
     gtacatttat tgtttatatg tatatataga aatacataca tgttcgacac ttacgttatt      2460
     cgtttaaggt gaccaacagt ctgtaacgat cgtcttaacg atatagacgt gagtatctat      2520
     tattaatatt tataaacagt ggccctacaa tgtaatttac aaaaattgtt gtgttttttg      2580
     tttttgtttt ctttgttaat aaagtgagcc tgatgaggtt ggcgttaaga ccaacgaaac      2640
     gttgctcaaa ctaacacctg attttttgga gttttcattc gtactcccaa aattagctct      2700
     tactgatcgt gtgcttaggc actgaccctc aagtcatcat ggaaacaact gagagcagaa      2760
     cgacatgttc aacaaacgac ataa                                             2784
//
ID   Penelope-2_CQ repbase;    DNA;    INV; 2296 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2296
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the southern house mosquito.";
RL   Repbase Reports 11(1), 601-601 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91%
CC   identity. Sequences 5-502 and 1773-2270 are terminal inverted
CC   repeats seen in several copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           491..1792
FT                 /product="Penelope-2_CQ_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="CVCCLDMFCEIVEFCVNRSYFSFNGEYYIQKFGTAMG
FT                 NPLSSPIADLVTEELIDHALEAVNFPIPHIKKYVDDMFLSLPADKIDYVKE
FT                 VFNSQDNNIQFTVEVEQNRRLPFLDMTLVRQEDQTVRTEWYMKPIASGRFL
FT                 NYHSHHPPHHKLNVAFNFAKRVKMLSTNLDHNTAANIIRKHLLINDYPKSL
FT                 INRVISRTPQNQLFEEVNNNTVIDNSENDTAMDASTNNTPIFYSLTNIYGL
FT                 TQKITKTLHKEYPNIQIAIKNTKTVASLLPLVKDKTPIQEQSNVVYAIPCN
FT                 DCDACYIGITTTKLKTRMSGHKSNVKQLQELKAKGYTNTDAEISWAKEKSA
FT                 LTSHVAAMDHSFGIDSVRIVDRSMKGANLPILESCHIKNTQHTVNKRTDTD
FT                 NLHAAYAGILNEIKNIYTRKKNQNKINKNNNSRDNTHTNT"
XX
SQ   Sequence 2296 BP; 755 A; 522 C; 463 G; 556 T; 0 other;
     aattataaat ttttaggtta ggttttggct ttcggtctgt ttggggaatc aaaacacttg        60
     tatgttctct tcatccgacg tttcgacccg ttttgggcct ttttcaagga atctaggggt       120
     agatttattg ggtaaggcac aaaaacataa aaaatgtaca cttatgctag gcttaccgaa       180
     atgggagtgt ttgtcgttag gggatgctcc gtcaagcaca gaactgtctg gtagcggggt       240
     aatctgtagt ttcagaaaac aaataaatat tcctaaatct acaaatattt ttctctccgt       300
     gcactcacgt ttcagcgaaa ctggccgcta tccggtattc gctcgtcata cgggttcgtt       360
     tcaacacgaa acgcgagaat ttttggggca cggataaatt cgacacactt tctaccattg       420
     gcgcgcaaac tatggcaata aaactcattc tagtgtgtga gtgtgttaag gtgttggcat       480
     tatgtgttag tgtgtgtgtt gtttggacat gttctgtgag atcgtagaat tttgcgtcaa       540
     ccgtagctat ttttctttca acggagaata ctacatccaa aagtttggaa cagctatggg       600
     caacccgctg tcatccccga ttgctgacct cgtaaccgag gagttgattg atcatgccct       660
     cgaagctgtt aattttccaa tccctcacat caaaaagtat gttgacgaca tgtttctgtc       720
     gctcccagct gataaaatcg actacgtgaa agaagttttc aacagtcagg acaacaacat       780
     tcagttcacg gtcgaagttg agcaaaaccg acggctccca ttcttagaca tgactctggt       840
     taggcaagaa gaccaaactg tccgcacaga atggtacatg aagccgatcg cgtcgggaag       900
     gttcctcaac taccactcgc accacccccc acaccacaag ttgaacgtcg cgttcaattt       960
     cgcaaagcgg gtaaagatgt tgtcaacaaa cttggatcac aacaccgctg caaacatcat      1020
     ccgcaagcac ctgctgatca acgactaccc aaagtcgtta ataaaccgcg tcatttccag      1080
     aacaccgcaa aatcagctgt ttgaggaggt aaacaacaac acagtgatag acaatagtga      1140
     gaacgataca gctatggacg caagtacgaa taacacacca atattctact cgctcaccaa      1200
     tatttatggt ctcacccaga aaataacaaa aacacttcac aaggaatacc caaacataca      1260
     aatagccatc aaaaacacaa aaacagtagc ttccctccta ccactggtga aagacaaaac      1320
     accaatacaa gaacaatcca acgttgtgta cgctatacca tgcaacgatt gtgatgcctg      1380
     ctatattggg attacaacaa caaaactgaa aacaagaatg tctggacaca aatcaaatgt      1440
     aaaacaacta caagaactga aagcgaaggg atacacaaac acagacgcag agatcagctg      1500
     ggcaaaagag aagtcggcgt tgacgagtca cgtagcagct atggaccact cgttcgggat      1560
     cgactccgta cgaattgtag atcggtcaat gaagggggcc aatctaccga tcctggagag      1620
     ttgccacatt aaaaacacac aacatactgt caacaagcgg acagacacgg ataatctgca      1680
     tgctgcatat gccgggattt tgaacgagat taagaacata tacacaagga agaaaaacca      1740
     aaacaaaata aataaaaaca ataacagtag ggacaacaca cacactaaca cataatgcca      1800
     acaccttaac acactcacac actagaatga gttttattgc catagtttgc gcgccaatgg      1860
     tagaaagtgt gtcgaattta tccgtgcccc aaaaattctc gcgtttcgtg tggaaacgaa      1920
     cccgtatgac gagcgaatac cggatagcgg ccagtttcgc tgaaacgtga gtgcacggag      1980
     agaaaaatat ttgtagattt agaaatattt atttgttttc tgaaactaca gattaccccg      2040
     ctaccagaca gttctgtgct tgacggagca tcccctaacg acaaacactc ccatttcggt      2100
     aagcctagca taagtgtaca ttttttatgt ttttgtgcct tacccaataa atctacccct      2160
     agattccttg aaaaaggccc aaaacgggtc gaaacgtcgg atgaagagaa catacaagtg      2220
     ttttgattcc ccaaacagac cgaaagccaa aacctaacct aaaaatttat tgatacggtc      2280
     gaataaacag caggat                                                      2296
//
ID   Penelope-2_DEl repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_DEl.
XX
NM   Penelope-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-523
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4599-4599 (2021).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus. Fragment.
XX
SQ   Sequence 523 BP; 205 A; 109 C; 91 G; 118 T; 0 other;
     gaccaaaatc taacaataaa caatttttca tcaacactaa aactaaaata ccgatacttg        60
     gcaaaaacaa tgtaatatat aagatcccat gcgctgggga tggtgacgta acgtgtaaca       120
     aagtatatgt tggcaagaca aagtcaaaac taaagacgag actagcagga cacaaatcag       180
     acataaaacg aagaggtgaa agttcaatac aaaaaacggc tcttgctgcc cactgtgcgg       240
     acacaagaca ttcgccagac tttgcgtcgg tcagcatatt acaacaagaa aacaattaca       300
     acaagcggtt tactctcgaa atgctccaca ttaacaatac tcccacgcac actagactaa       360
     actttaaaac agacaccgaa aaggcgcaca catctacaga catttacttg accaaaataa       420
     atttagaaat tagtttataa ctccgcagcg gaaagaacgg tcgctgtgta tccatgtagg       480
     tgtccgaata tttgtttaca attaagtgaa tgttaaaagc ttg                         523
//
ID   Penelope-2_DTa repbase;    DNA;    INV; 2949 BP.
XX
AC   .
XX
DT   31-AUG-2021 (Rel. 26.10, Created)
DT   15-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Penelope-like retrotransposon from the Drosophila takahashii
DE   genome: consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2949
RA   Bao W.;
RT   "Penelope-like retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5937-5937 (2021).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(402..1016,976..1674,1634..2776)
FT                 /product="Penelope-2_DTa_1p"
FT                 /translation="RRNEDDHQTLPNQIDADGQTSVEYKIPKFIQRTTRLD
FT                 QIFTSNKQTPKHIRELIDRHTHFFQTKLLNILIKLRHNILKEQSKQLTITK
FT                 TTLINALKSEDAEEFFESEQLLEQTKTKVWRETQQKKHENLRQERKSKVYG
FT                 NNNNGTKWFVNRTNTEFPPDVEALLGKGPKFALPIAAKKFPLLQCIADGEE
FT                 LVQSNNEKETQASLKCKATTKKRLKRLLSDALTRHRLTARDHVILDTVGQT
FT                 QDFLRKNRDIIILNADKGNVTVAMKKDDYKHRMTTLLEDLGIYRKLRQDPT
FT                 LKLQSKNNQLVEKLIKLEIITNREKYKLTTHTALPPRIYGVPKIHKPDMPL
FT                 RPICSMINSPSYNLCKFMSNILKNLTTKSSFNVKSAIEFKVRVNNTYIRDD
FT                 ECLVSFDVVSLFPSIPTELAIQVIQSKWEMIEEFTSIHNRKQVLLKNSPAY
FT                 ITENRYFRYEDNIYTQLKGLPMGSPASPIIADIIMEEVLARVQNTRLLSKY
FT                 VDDLFAIVKKEDVQKTLDTLNSYHKDIKFTMEMEVEDKLPFLDSLVCKVNN
FT                 RIKLDWYQKPTSSGRIINYHSKHPRNMIINTAKNQIRRILDTSDEIFHEKN
FT                 RMRIWTILKNNDFPNAXIHKMTQAYYEEEKNKIDMGKPKTYKSVIYVPGFS
FT                 DRLKSSNIYDKENIRIAHKPAQITNIFFSNMKSKIEKLDKNNLIYKIPCAG
FT                 DKNTTCDKVYVGTTKCKLKTRISGHRSDMNKIHEINSQKTALATHCKSTGH
FT                 RPDFDAVSILQQEEHYNKRLAIEMLHIINTPTNIRLNFKTDTDNCGHLLEK
FT                 NRVSLQLHGGQIGRRAL"
XX
SQ   Sequence 2949 BP; 1220 A; 591 C; 504 G; 633 T; 1 other;
     caatagaaat gcttcacatc ataaacacac ctacaaacat taggctcaac tttaaaacag        60
     acacagacaa ttgcggacat atatacagac acttgctaga aaagaacaga gttagtttac       120
     aactccacgg cggacagatc ggacgtcgtg cgctttgatt taaaagcaat gtatgtataa       180
     acaaggtaaa atgtttttat gtcattaaat gtaataattg ttaatatatg tagcccctga       240
     agattgggaa aaaacaaaaa aaaaggaccc agacctcgag ccagccaaac caatcgtttg       300
     ataaaatcaa aaaggtcgcc aaacaccaac aacttaacca acggaaggca cgccgtaaac       360
     ataaacagga tggtttatgc aaaactgaaa acaacatata acgacgaaac gaagatgatc       420
     atcaaacgct tccaaaccaa atcgatgcag atggccaaac ttcagtcgag tacaaaattc       480
     ctaagtttat tcaacgcaca accagacttg accaaatatt tacatcgaac aaacaaacac       540
     caaaacacat aagagaactt atagacagac atactcactt tttccaaaca aaattactaa       600
     acattcttat taaactgagg cataacattt taaaagaaca atcgaaacaa ctcacgatca       660
     caaaaacaac gcttatcaac gcgctgaaga gcgaagatgc agaagagttt tttgagagcg       720
     aacagctgct agaacaaaca aaaacaaaag tctggagaga gactcaacaa aagaaacacg       780
     aaaatctgag acaggaacga aagtctaagg tttatggcaa caacaacaac ggaacgaaat       840
     ggtttgtaaa cagaacaaac actgagttcc cgccagacgt ggaagcactc ttaggaaaag       900
     gtccaaagtt cgcactccca atagcagcaa agaaattccc gctcttacaa tgcatagctg       960
     acggagagga actagtgcaa agcaacaacg aaaaagagac tcaagcgtct cttaagtgac      1020
     gctttgacaa gacacaggct gacagctagg gaccatgtca tattggacac agtgggacaa      1080
     acccaagatt tcttacgaaa aaatagggac ataataattt tgaacgcaga taaaggaaac      1140
     gtgaccgtcg ccatgaaaaa agatgactac aaacacagaa tgacaaccct gttggaggat      1200
     ttaggtattt accgaaaact acgacaggat cccacactaa agttacaaag taaaaataat      1260
     caattggtag aaaaattaat caaattagaa attataacaa atagggaaaa atataagctc      1320
     acaacacaca cagccttacc ccctagaatc tatggagtac caaaaattca caaacctgac      1380
     atgcctctga gaccaatttg ctcgatgata aattcgccta gctataatct ctgtaaattc      1440
     atgtccaaca ttttaaaaaa cttgacaaca aaatcttcgt tcaacgttaa aagtgcaata      1500
     gagttcaaag tcagagtcaa taatacgtat atacgtgacg atgaatgtct tgtatcgttt      1560
     gatgttgtat cgttgtttcc tagtataccc actgagttag ccatacaggt aattcaatca      1620
     aaatgggaaa tgattgaaga attcaccagc atacataaca gaaaacaggt actttagata      1680
     tgaagacaac atttacacgc aacttaaagg actaccgatg ggatccccgg catcaccaat      1740
     tatagcggac atcataatgg aggaagtact cgccagagtt caaaacacga ggctacttag      1800
     caaatatgtg gacgatttat ttgctatagt gaagaaagaa gacgtccaaa aaacattgga      1860
     cacattaaac tcataccaca aggacataaa attcacaatg gaaatggaag tagaggacaa      1920
     attaccgttt ttagactcat tggtatgcaa agtgaacaat aggattaaat tagattggta      1980
     ccaaaaacca acatcatcag gcagaataat caattaccac tccaagcacc cccgtaacat      2040
     gattataaac acagcaaaaa atcaaattag aagaatttta gacaccagcg acgaaatatt      2100
     ccacgagaaa aacaggatgc gaatttggac aatccttaaa aacaatgact ttccaaacgc      2160
     aawaatacac aaaatgacac aagcatatta cgaggaagag aaaaacaaaa tagatatggg      2220
     caaaccaaaa acttacaaat ctgtgatata tgtacctgga ttctccgaca gactaaaatc      2280
     gtcgaacata tatgacaaag aaaacatcag aatagcacac aaaccagccc aaataacgaa      2340
     tattttcttc tctaacatga aaagcaaaat agaaaaatta gacaaaaata atttgattta      2400
     caagattccg tgtgcaggag acaaaaatac aacctgtgat aaagtatatg ttggcacgac      2460
     taaatgtaaa ttaaaaacga gaatctctgg acatcgatcg gacatgaaca aaatacacga      2520
     aataaacagc caaaaaacag cactcgcgac acactgtaaa agtaccggtc acaggccaga      2580
     tttcgatgca gtaagcatat tacaacaaga agaacattac aacaaacgac tcgcaataga      2640
     aatgcttcac atcataaaca cacctacaaa cattaggctc aactttaaaa cagacacaga      2700
     caattgcgga cacttgctag aaaagaacag agttagttta caactccacg gcggacagat      2760
     cggacgtcgt gcgctttgat ttaaaagcaa tgtatgtata aacaaggtta aatgttttta      2820
     tgtcattaaa tataataatt gttaatatat gtagcccctg aagacgatct ccggaggaga      2880
     tcgaaatata ttgggaaaaa ccaaaaataa ggcacccaga cctcgagcca gccaaaccaa      2940
     tcgtttgat                                                              2949
//
ID   Penelope-2_FoCa repbase;    DNA;    INV; 2937 BP.
XX
AC   .
XX
DT   05-NOV-2019 (Rel. 24.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_FoCa.
XX
NM   Penelope-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2937
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2735-2735 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. The sequences 1-291 and 2647-2937
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           266..2758
FT                 /product="Penelope-2_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MSSDNSNSNFEYHGWKDLKIFITRRFGTSIMNCIKLL
FT                 EKEEQRTVKLNNDIVFLKRCRTHNLTPKGMKIKNHWCHIPGSNDLLKKAEQ
FT                 TLVKLQIHFKFAELEKLKKSISIKQQQLITLPPTVNEKVSKYMRDDKMAFN
FT                 LQTKTLQAKKFDHLLRGTITTKATRHQPFPSKIATHHDIEKSIVNLSHREL
FT                 TEDETKALQLGLNYALPYFKHKDLIIEAGINIELCLNDFEITEVHKNKIRS
FT                 GISRILHSEINKPDEVSRNYEWLKPICKNLKQDKSITIVPADKGNMTVIMS
FT                 TTKYDEKVQELLNDPNYTIIPTDPTKLVEQEIHTLANNLFKLKRIDKNQYQ
FT                 HISPSNSKIPKFYGLPKIHKDGVPFRPIVDFRNSPSYNLAHFLNKILKCVT
FT                 SKFPTSLKNSYEFADKIKNFIVPPNHELVSFDVTSLFTRVPIQQTLNYIKK
FT                 RLDSCNDWKAVTKLTSEEVMKLIRITVNSNYFTRKGKIYRQKDGTPMGSPI
FT                 SPVFAEFCLQELEEQLILNNPDIPFYQRFVDDSNGCIKAGKKDSILQSLNS
FT                 FHPSIQFTCETEESRKLPFLDVLISRDEDGTIHRQVYRKPTHTGRYLNYNS
FT                 YHHPSQKLAVIDALSYRAFKICDDEYLENELNLITSSLMTNGYPKNLIKLR
FT                 IEKMRTKFSTQPTNHENQDEAKSPRIILPYMGPLTHRLTNYLRNNLNCEFG
FT                 YLTGKKMKQIICSYKENPPSDKVGIYKIKCSCPSIYIGETSRPLNQRVKEH
FT                 LNDIKKKNVKSAVALHIMENPNHNINQDSASLILPERRNFHRKFLESLYIR
FT                 KTSDAMNQDHGMNLNPIWSSLMLPLIKRP"
XX
SQ   Sequence 2937 BP; 1098 A; 652 C; 455 G; 732 T; 0 other;
     acttcttgaa agtctgtaca tccgtaaaac ctccgacgcc atgaatcaag accacggcat        60
     gaacctgaat cctatctggt cttcactaat gttaccactg atcaagcgcc cctgacaacg       120
     ataccgtttt tgaataacaa caataattta tgattagcat tgtgagtgaa atcaatcttg       180
     ttttcttgat ttcaaatatt gtccctgaag atgatactag tgagtatcga aagctaggaa       240
     taaatatatc tgaattaaaa caaccatgtc gtccgataac tctaattcta attttgaata       300
     tcatggttgg aaggatctca aaatctttat aaccagacgg ttcggcacgt ctataatgaa       360
     ctgcataaaa cttttggaga aagaagaaca acgaacggtt aaactcaaca atgatattgt       420
     attccttaaa cgatgccgga cacacaatct gaccccaaaa ggaatgaaga tcaaaaacca       480
     ttggtgccat attcctggat ccaacgattt actcaaaaaa gcagaacaaa ctttggttaa       540
     actgcaaatc catttcaaat ttgctgaatt ggagaaattg aagaaatcga tctcaattaa       600
     acaacaacaa ctcataactc ttcctccaac tgtcaacgag aaagtgtcaa aatacatgcg       660
     tgatgataaa atggctttca atctacagac caaaacccta caagcaaaga aatttgacca       720
     tctcctgaga ggaactatca caacaaaagc caccagacat caaccctttc ccagcaaaat       780
     agctacacac cacgacatag agaaaagtat agtaaatcta tcccatcgcg aactaacaga       840
     ggacgaaacg aaagcacttc aactaggtct aaattacgcc ctcccatatt tcaaacacaa       900
     ggaccttatt atagaagcag gcataaatat agaactatgt ttgaatgact tcgaaataac       960
     ggaagtacac aagaataaaa ttcgatcagg aatttccaga atattacact cagagatcaa      1020
     caagccagac gaagtgtcca gaaactacga gtggctgaaa ccaatttgta aaaatctcaa      1080
     acaagataaa tctattacaa tcgtccctgc agacaaagga aatatgacag tgatcatgtc      1140
     cacaaccaaa tacgacgaga aagttcaaga gctacttaat gatccgaatt acaccatcat      1200
     ccccaccgac cctacgaaat tagtggaaca agaaattcac accttggcga ataatttatt      1260
     caaactaaaa agaattgaca aaaatcaata ccaacacatt tctccttcaa actcaaagat      1320
     cccaaaattc tatggactcc ccaaaatcca taaagacggt gtaccttttc gtccgattgt      1380
     ggatttccga aattcacctt cttataatct agctcatttc ctcaacaaga ttctaaaatg      1440
     tgtcacgtcc aaattcccca cttctctgaa aaattcatat gaatttgcag acaaaatcaa      1500
     gaatttcatt gtccccccca accatgaatt ggtctcattt gatgtcactt cactattcac      1560
     acgcgtccca atacaacaaa ccctgaatta tattaagaaa cgactggact cctgtaacga      1620
     ttggaaagct gtcacaaaac tgacctcgga agaagtgatg aaactaatca gaatcacagt      1680
     caactccaac tattttaccc gaaaaggaaa gatttacaga caaaaagatg gaacaccaat      1740
     gggaagccca atttcaccgg tctttgcaga attttgtcta caagaattag aagaacaatt      1800
     aatattgaac aatccagaca ttccttttta ccaaaggttt gtggatgact ccaacggctg      1860
     tatcaaggca ggcaagaagg atagtatcct ccaatctctt aacagttttc accccagtat      1920
     ccaatttaca tgtgaaacag aagaaagtcg caagctgcca tttttggatg tcttaatatc      1980
     ccgagatgaa gatggaacca ttcacagaca agtttatcgc aaaccgacgc acactgggag      2040
     atacctcaac tataactcat accaccatcc atcccaaaag ttggctgtaa tagatgccct      2100
     cagttataga gctttcaaaa tatgcgatga cgaatatcta gaaaatgaac tcaatttaat      2160
     aacaagctct ttgatgacaa acggatatcc gaaaaactta atcaaattaa ggatagaaaa      2220
     aatgaggaca aaattttcaa cccaacctac taaccatgaa aatcaagacg aggcaaaatc      2280
     accaagaata atcttaccgt atatgggacc actcacccac cgattaacga attacttacg      2340
     caataaccta aattgcgagt tcggatattt gactgggaag aagatgaaac aaataatctg      2400
     ttcctacaag gagaatccac catccgataa agtaggaatt tataaaatta aatgctcttg      2460
     tccctccatt tatataggtg agacaagccg cccgcttaat caacgagtaa aagaacatct      2520
     aaatgacatc aaaaagaaaa acgtaaaatc agcggtggca ctgcacatca tggagaatcc      2580
     caaccacaat atcaaccaag actcagcaag tctaattcta cccgagcggc gaaattttca      2640
     cagaaaattt cttgaaagtc tgtacatccg taaaacctcc gacgccatga atcaagacca      2700
     cggcatgaac ctgaatccta tctggtcttc actaatgtta ccactgatca agcgcccctg      2760
     acaacgatac cgtttttgaa taacaacaat aatttatgat tagcattgtg agtgaaatca      2820
     atcttgtttt cttgatttca aatattgtcc ctgaagatga tactagtgag tatcgaaagc      2880
     taggaataaa tatatctgaa ttaaaacaac catgtcgtcc gataactcta attctaa         2937
//
ID   Penelope-2_HMM repbase;    DNA;    INV; 290 BP.
XX
AC   .
XX
DT   12-FEB-2013 (Rel. 19.10, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-2_HMM.
XX
NM   Penelope-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-290
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2878-2878 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. A fragment of Penelope-like
CC   retrotransposon.
XX
SQ   Sequence 290 BP; 103 A; 60 C; 53 G; 74 T; 0 other;
     agctttctac caccataaaa tccttgaagt ctcaaaccca ccataccaga aggcaagata        60
     cagtcagctc attctgcagg aatccagggc agtacgcgag gcaattaaga aatcgttggc       120
     ggtagtttga tataataatt atgtcaactg acagacgaat gccacctcag tctacccgtg       180
     accacggact actgtaaagt gttcgaaacg tcgggtttcc aaaaatatgt aatatccaaa       240
     taaacgcggt taaaatagtt tcatttaaaa agaatagtaa tatttaatat                  290
//
ID   Penelope-2_LHu repbase;    DNA;    INV; 2316 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_LHu.
XX
NM   Penelope-2_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-2316
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 481-481 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. ~330bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..1564
FT                 /product="Penelope-2_LHu_1p"
FT                 /translation="MFTNIPIELAIDSISNRWVSISPNTSIPLNEFLKGIR
FT                 LILSSTFFNFNNKIYKQTYGTPMGSPLSPLIADLVLQDLEISALDRLPFRL
FT                 PFYYRYVDDIILAAPNNSINFISDVFNSYHERLKFTVEVGLDNRINFLDLT
FT                 LIVKNNTITFDWFRKPSSSGRLLNYHSHHPISHKKGTIISLTDRIFLLSHP
FT                 EFHNKNFTIAINILLNNCFPINFIFSTIHNRLKFLIHKKSSDINLISNCSN
FT                 NIYDNNDFKTFFTIPYIPSVYKDFNSIARSFNLKLSCSIPNNLTQFIRTGK
FT                 DSLNKFSHCQVVYMISCRDCEKTYVGQTKRQLNTRIKEHKNDIKKSCSPSV
FT                 ISKHKLDFSHDFDWDNVRILDGEPSYGKRLISEMVFIKRQRAGLNNQNDTE
FT                 RLPDSYLPIINLFPPL"
XX
SQ   Sequence 2316 BP; 683 A; 433 C; 335 G; 865 T; 0 other;
     gggggaacag ctctttttta tgtcattctt gtgttcttta attctagtat taagctgtct        60
     ttttgtctga cccacgtaag ttttctcaca atctcgacat gatatcatgt atacaacctg       120
     acaatgtgaa aatttattca aactgtcttt gcccgtccgt atgaattgtg ttagattgtt       180
     aggaattgaa catgataatt ttaaattgaa gcttctggct atggagttaa aatctttgta       240
     aaccgaagga atgtaaggaa tagtaaaaaa agtcttgaag tcattattgt ctattgggga       300
     cgattttcaa attatttccc tagatgttgt atccatgttc acgaacatcc ccatagaatt       360
     agctattgac agcatttcta acagatgggt ttcaatttcc ccaaatactt ccatccctct       420
     taatgaattt ctgaagggca tccgcttgat actgagctcc acttttttta attttaacaa       480
     caaaatttac aaacaaactt atggcacccc catgggctct cctttatccc cattgattgc       540
     tgacttagta ctacaggacc ttgaaatcag tgcgttagat agactacctt ttaggttacc       600
     tttttattac cgttatgtgg acgatatcat tttagctgca cctaacaatt ctataaattt       660
     tatcagtgac gtttttaatt cctaccatga gagactaaag tttactgtgg aagttggttt       720
     ggacaatcgc attaatttcc tcgatttaac tctgattgtg aaaaataaca ctatcacatt       780
     tgactggttc cggaaacctt cttcttcggg tagattatta aattatcatt cccaccatcc       840
     gatatcgcac aaaaaaggga ccattataag tttaacggac aggatttttt tactttctca       900
     tcctgaattt cataacaaga attttacaat tgcaatcaat atcctactta ataactgttt       960
     tcctatcaat tttatttttt cgactataca taataggctt aagtttttaa ttcataaaaa      1020
     atctagtgac attaatttaa ttagtaattg ttcaaacaat atttatgaca ataatgactt      1080
     caagactttt tttactattc cttacattcc ttcggtttac aaagatttta actccatagc      1140
     cagaagcttc aatttaaaat tatcatgttc aattcctaac aatctaacac aattcatacg      1200
     gacgggcaaa gacagtttaa ataaattttc acattgtcag gttgtttaca tgatatcatg      1260
     tcgagattgt gagaaaactt acgtgggtca gacaaaaaga cagcttaata ctagaatcaa      1320
     agaacacaag aatgacataa aaaagagctg ttccccctct gttatatcca aacataaatt      1380
     ggatttttct cacgattttg actgggacaa tgtgagaatt ctggacggag aaccttctta      1440
     tggaaagaga ttgatatccg aaatggtgtt cataaaaaga caacgtgcag gcttgaacaa      1500
     tcaaaatgac acagaacggt tacctgactc ttatctcccc attattaatt tgtttccccc      1560
     gttataattg tatcgttttt cttttcatat attaattcct gtcttcccct cctaggtact      1620
     tataccctcc cctccatact ccttgttctt tccgtccccc cttctccacc gccctctcac      1680
     taatctttca tcgcttgaat ttatcgttat tctatcacgt acattgaggt ttcaaccatc      1740
     acattatatg gttctaagtt ttttctccta cctcgttcca tcttgtgtgg acgagctttc      1800
     tactatgttt aacacaagta tgtaaaaatt gtttcttttt tctgtttttc ggtttgcgct      1860
     caatttgtaa cgggaatttt ctcatttggc tcttttttat tacagtttaa cgtggtttta      1920
     actactcttc agtttattat gtcaatttta cttcgttttt tgtatttaat ttttgcgttg      1980
     cgtatttatt gaattttgta ataacattga taaaggcctg atgacaggct gaaacgtttg      2040
     ttttttaatg tattgttcaa tggttataaa ttaatacacg ataaccttcg cacgaatatc      2100
     tggctgttgg ctctttacgc tcctatcaaa tttattgatt ttaacaatca tcagagcctg      2160
     atacatctat aatttttaaa atattaatat ttttctccaa aactaaaatt ttttatgtat      2220
     ttttaatatg taaagattat aaggtggaca tctctttaac aatacgtaac aatcctttag      2280
     tgacataaac gttgtgtccg ttttatgtaa tgaaat                                2316
//
ID   Penelope-2_LMi repbase;    DNA;    INV; 2610 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_LMi.
XX
NM   Penelope-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2610
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3176-3176 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           296..2362
FT                 /product="Penelope-2_LMi_1p"
FT                 /translation="MIAANVSEFSWDWLDGASWTQSDWEFQSVTARHSAKF
FT                 ERFLGSESDSNLISRRSVINLTEKTYDDAALSVLGKGLNFAPTPKRLPVVD
FT                 FISSIEQAVSKLPSDSAEEARREACRVLTGARPPKCNITAAEASALRSLRM
FT                 DPDIVILPADKGNATVLLNKDDYIQKMQCLLSDSAYRRIGADPTKSVERKT
FT                 NNLLKKSPFSQETIKSLNSYCAVPPRLYGLPKVHKENIPLRPIVSNIGAPT
FT                 YRVAKHLASLLSPMVGRCEHHIKNSADFLRRLQGLRLNDSDILVSFDVVSL
FT                 FTRVPLSDSLQLIEVKFGVELTNLFRHVLTSTYFLFNGQYYEQTDGVAMGS
FT                 PLSPIVANLFMEDFEERALVSATLKPACFFRYVDDTFVVWPHGSENLNGFL
FT                 EHLNSIHPNIQFTMEVEKNGCLPFLDVLVRRKVDGTLGHSVYRKPTHTDLY
FT                 LRADSCHHPAQREGVLRTLVHRAHVISDPESLSAELSHLEVTFRQNGYSER
FT                 QIKRALRYQPSVQRVSDDSNEVAPKSMAFLPYAGSISNKIGRILRKYDVKC
FT                 VFRPPSKIKALLGSVKDDLGLRKAGVYRIPCSCGMSYIGQTIRTVEDRCIE
FT                 HKRYTRLQQPNKSAVAEHCLGTGHPMEYNNTEILACTSTYWDSVIKEAVEI
FT                 KLASDLINRDGGFCLNSAWNPALSLVKKQRDKINAASPVD"
XX
SQ   Sequence 2610 BP; 641 A; 519 C; 623 G; 827 T; 0 other;
     aagttgtttg aacattcata tgcgggaaaa gttattcaca ttgtttttac ctctacggga        60
     ggaaatgtat cggtgtttac ggaagttgga taaactccgc agcagtagag taaggttatg       120
     tgcttgtcgt gttgaagtgt ccatattgtt ccacgtttgc taaggttgtg caccatatta       180
     attctcctgc cgccacgtat caagcaacgt gctgcttagc tcttgttcgt gaaaggatcc       240
     actttatcgt cgtcaattag attttgtttc caaggagtta tttcggcttc atttaatgat       300
     tgctgctaat gtttctgaat tttcttggga ttggttggac ggtgcctctt ggacacagtc       360
     tgattgggaa tttcaatctg taactgctcg gcattcggcg aaatttgaac gtttccttgg       420
     ctcggagtct gattcaaatt taatttcgcg acggtctgtg atcaatctca cggagaaaac       480
     ttatgacgac gcagctttat ctgtgttggg gaaaggtttg aatttcgcac cgacgcctaa       540
     gcgtttaccg gtcgttgatt tcataagttc tattgaacag gctgtttcta aactaccttc       600
     cgattctgca gaagaggcta ggagggaagc ttgtcgtgtg ttgactgggg cccgtccacc       660
     caagtgtaat ataacagcag ctgaggcgtc tgctttacgg tctctcagaa tggatcctga       720
     tattgttatc ttgcctgcgg acaagggaaa cgccacagtt ttgttgaata aggacgatta       780
     cattcaaaag atgcaatgtc tgctttctga ttcggcatat cgtaggatcg gtgctgaccc       840
     cacaaagagt gttgagagaa agactaataa cctcctgaag aaaagtcctt tctcacagga       900
     gaccatcaag agtcttaatt cttactgtgc tgtaccacct agattgtatg gccttcctaa       960
     ggtccacaaa gagaacattc ctttgaggcc tatagtgtct aacattggtg ctccgacata      1020
     tcgtgtagct aaacatcttg ctagtttgtt gagtccaatg gtaggcaggt gtgaacacca      1080
     cattaagaac tcggcggatt tcttacgtcg attgcaggga ttgcgtttga atgactctga      1140
     tattttagtg agttttgatg ttgtgtctct cttcactcgc gttcctctgt cagattcgtt      1200
     gcagctaatt gaggttaagt ttggtgtcga gttaacaaat ctttttcgac atgtgctgac      1260
     ttccacttac tttttattca atggtcagta ctatgaacaa actgatggag ttgcaatggg      1320
     aagcccgttg tcacctattg tggccaattt gtttatggag gatttcgagg aacgtgcttt      1380
     agtgtcagcg actctgaaac ctgcgtgttt tttcagatat gtagacgaca cttttgtcgt      1440
     ttggcctcat ggtagtgaga atttaaacgg ttttttggaa cacctaaatt caatccaccc      1500
     gaatattcag ttcactatgg aggtggaaaa gaatggctgt cttcctttcc ttgatgtgtt      1560
     ggtcagaagg aaggttgatg gtacattggg acattctgtt tataggaagc ctactcacac      1620
     tgatttgtat ctgcgagctg atagttgtca ccatccagct cagcgtgaag gagtacttcg      1680
     taccttggtt cacagggcac atgtcatttc agaccctgaa agtttgtcag ctgagttgtc      1740
     ccatctcgag gtgacctttc gtcagaatgg ttatagtgag agacagataa aacgtgcgtt      1800
     gcgctatcag ccttctgtgc aacgggtgag tgacgatagt aatgaagtgg cacctaaatc      1860
     tatggccttt ttgccttacg caggaagcat ttccaacaag attggtcgta ttttgcggaa      1920
     atatgatgtg aaatgtgttt ttcgaccacc ttctaagata aaggccctgt tggggtccgt      1980
     aaaggatgat cttggtttgc gtaaggcagg tgtatatcgt attccttgca gttgtggcat      2040
     gtcatatatt ggtcagacaa tcaggactgt ggaagaccgg tgtattgaac acaaacgtta      2100
     cacgcgctta caacagccaa acaaatccgc tgttgcagaa cactgtcttg gcaccggtca      2160
     tcctatggaa tacaacaaca cggagattct ggcatgcact tccacctatt gggatagtgt      2220
     tattaaggaa gctgttgaaa ttaaactagc aagcgacctt ataaacagag atggtggttt      2280
     ttgtttaaat tctgcttgga atccggcact gtctctcgtc aaaaaacaga gggacaaaat      2340
     taatgctgcc tcacctgttg attaacagtc actatcgata tttttgatgt ttggtcatct      2400
     ttggttgtgt tgactctgca gtgacttgta ctgtgtgtgt tatcttcctt gtttaccctt      2460
     tgcaaaccga ggtattaaat acgcttgcac attgcttcct tgagtgcagt tgtgccttga      2520
     gaatggcagg gtgtcctcct gccgaaatat cggcggttgt cgacgacgtc acccggcagc      2580
     atacccgtaa gttgtttgaa cattcattac                                       2610
//
ID   Penelope-2_PBa repbase;    DNA;    INV; 2303 BP.
XX
AC   .
XX
DT   23-APR-2011 (Rel. 19.03, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Pogonomyrmex barbatus:
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-2_PBa.
XX
NM   Penelope-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2303
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 752-752 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to the consensus.
XX
SQ   Sequence 2303 BP; 847 A; 601 C; 348 G; 504 T; 3 other;
     atcctattcc tctcatccac actacgacag gacatttggc agagtttaga ccgcattaca        60
     tacgaacaag caacagaaca tccacgcaca ctccacggag cgacagaaac aaaaattcaa       120
     agacctaagt ccagacaaca actccttatc tcctctacta aacactgtca aaaacttgtc       180
     caacagaaat ctctcacatg atacttatct ctgcgctggc caaaggcccg aatttcgcaa       240
     tagcactcaa taagatccca aaaggagatc atcagtcaaa tagcagtcaa ccatctatcg       300
     actcccatca gaacaagcag atagtattcg gaggcaggta accaatatcc tttccaaagc       360
     caagtctcca ctactagaca wcaacaacta gacaagaacg actcgctctc caagaactga       420
     acaaagacac tgatgttatc gtattaccas cagacaaagg taatacgacg gtagtcatga       480
     atacatcaga ttataagaag aaaataaaaa ctctcctctc taataagaca tattcgagac       540
     tcgacaaaga cccaactgac tctattatgc gaagtaccaa gatcctaata gaaaaaagca       600
     atattccaga cgaaactaag aagacaataa aacccactaa ctcccttcca ccmagactat       660
     acggactacc taaagataca caaacctaat gctcccctca gaccaattgt cagcgccata       720
     aactcaccaa catacaacct ctcacatttc ttagcccaaa gactacaact cctcacagga       780
     aacactgaat cacatatcat taactcgacg gactttgtac agaaaatcca aaaaatccga       840
     ttacttcctg gagacatgct ggtgagtttt gatgtagaat ccctgttcac acaagtccca       900
     atcaatgaca cgctagacat aattaagtcc tcacatgaag tgccctccac tcttatcccc       960
     cttatcgaac actgcttgaa aaccacatat ttctcctata acaaccaatt ctatgaacaa      1020
     acttcggggg cggcgatggg ttcccccatt tctcctgtaa tcgctaacat cttcatggag      1080
     aacttcgaga aagaagccct atgcaaagcg tcacaagaaa cctgaagttt ggttccgtta      1140
     tgtagacgat acttttgtaa tctggagata tggtagagca gaactacgaa aattcctaaa      1200
     ttttcctcaa cactcaacat tccaatatcc gcttcaccat ggaaatagaa gaaaatggaa      1260
     gactcccctt cctaatacta gtgattaaga aagctgacaa caccttaggc catcaggtat      1320
     acagaaaacc gacacacaca gatagatatc tgcatgcgga atcacaccat catccaatac      1380
     aaaaacagtc agcaatcaac tcattgtaca tagagcactc actgtctctg acaaagaaca      1440
     tttacagacg gaactcaacc acttgaaact aaccctacaa cagaatggac acgacaaaaa      1500
     aaagatataa ataaaataat caacagacac ataaacaaga caagagagcc agacgcacaa      1560
     gtatcacatg acgagacaga cagaaaaatc ctctccatcc tcccatatat aaaaggaaca      1620
     accgatcgca tcggcaggat tctgaagaaa tacaacatcc gaactatctt tagacccccc      1680
     aagaaaatag gacaaatctt gagaaatcct aaagaccaaa gacccccact cagctcagca      1740
     ggagtgtata aaataccttg ctcatgcggc aaagtataca ttggggaaac cgggagaatg      1800
     gtcaacgtat gaaagaacat caacgcgatg tcagattaaa acacgtcgca cagtcagcat      1860
     tatcagaaca taacattgaa acaggacatc aaatactatt tgataaaaca acaacaatag      1920
     ctacgactac ctcgtatttc ccaaggaagt acagagaggc tatagagatt caaaaacatc      1980
     acgacaacct aaatagagat aatggttaca atataagtga catatggaaa accattctcc      2040
     cgattgatcg aaagtgactc cccccacctc cctctctctt cctctcttca tcatagtttt      2100
     agccaatctt tatcttctcc cccattttcc tccactccta ccctcctctc atacagcgta      2160
     tataagggaa ctccaccgga gaagcagtac agtatcaggc tgctcctcgc cctgatgaag      2220
     tgaactgcaa tgttcacgaa acgttggcat tcaacaatgc ataatgacac ggataatacc      2280
     cgtaaaaata ttactttttt gaa                                              2303
//
ID   Penelope-2_SIn repbase;    DNA;    INV; 2194 BP.
XX
AC   .
XX
DT   24-NOV-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_SIn.
XX
NM   Penelope-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2194
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 486-486 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1729
FT                 /product="Penelope-2_SIn_1p"
FT                 /translation="MESMLSDXSTYVKLSKDPIQKLTKEARSLLSRWKETG
FT                 FIEQHTYRSILTTDGVLPRAYGLPKIHKPNNPLRIIISSINSPVHSLAYFL
FT                 HNIIYNSIPEADSFVKNSFHLVNKLNGLHVESDHVLVSLDVVSLFTNVPKN
FT                 LAVESVTTRWDLISKNTTIPVNEFLKALNLIIDSTYFKFNNTCYKQIFGLP
FT                 MGSPLSPILADLVMQDLECKALKLLSFHLPFYCRYVDDIILAAPANSLSGI
FT                 LDTFNSMHDRLQFTMEREIEGKISFLDVMLINVNNRIIFDQYRKPTFSGRY
FT                 LNFFSHHPLCHKKGVIFGMVDKLLLLSHPQFHRKNFIILVNILLENNYPLN
FT                 FIFSMINFRLKHLFYKDDTCVDDKRVRRFFTIPYIESVSEKFSSFSCKFDC
FT                 SVAFTIPSKLNKFITTGKDHTERLSCNDVVYKINCKDCDSSYVGQTKRQLK
FT                 TRVSEHKADIRKASSPSVISLHRIGENHEFDWENVEILDKEPSYVKRSISE
FT                 MLHIKNQMHGLNKQSDTELLSDAYLPILERIPPS"
XX
SQ   Sequence 2194 BP; 643 A; 441 C; 360 G; 747 T; 3 other;
     aaagatcaat gaccagctaa ttaaagactg gttacgaacc acggggagat tcgttagaga        60
     gcatcccaat attttgttta ccagagcgga caagggtaat ataacagttg cccttgacaa       120
     gaatgattac atcttgaaaa tggaaagcat gctctctgac gantctactt acgtcaaatt       180
     atcaaaagat ccgattcaaa aattaaccaa agaggctcgc tctcttctct cccggtggaa       240
     agaaacaggt ttcattgaac aacatacata taggagtata ttaacaacgg acggtgtttt       300
     gccgagagcc tacggtttgc cgaagatcca taaacctaac aatcccttaa gaattataat       360
     ttcttccata aatagccctg tacactctct agcttatttt ttacataaca taatttataa       420
     cagtatacca gaggcagata gtttcgttaa aaatagtttc catttggtta ataaactcaa       480
     tggccttcac gtggaatcgg atcacgtctt agtgtcattg gacgtcgtgt ctcttttcac       540
     caatgtccca aaaaacttag cggtggaaag cgtcacgacc agatgggatc tgatttcaaa       600
     aaacactact attccggtca atgaatttct caaagcttta aatttaataa tagattccac       660
     gtattttaaa tttaataata cttgttataa acagatcttc ggtctgccga tgggatcacc       720
     gttgtctcct atcttggcgg atttggtcat gcaggatctg gagtgcaagg cgttaaaact       780
     tctttctttt catctacctt tttactgcag atatgtagat gacattatat tagcagcccc       840
     ggctaactcg ctatcgggca tccttgacac gtttaattcc atgcatgacc gtttacaatt       900
     caccatggag agagagatcg aggggaaaat cagttttctt gatgttatgc ttataaatgt       960
     gaataataga attattttcg atcaataccg caaaccaact ttctcaggaa gatacttaaa      1020
     ttttttctca caccatcccc tgtgtcataa aaagggtgtt atttttggta tggttgacaa      1080
     attactgtta ttatcacatc ctcaattcca ccgtaagaac ttcataattt tagttaacat      1140
     tttattggaa aataactatc ctttaaattt tatcttctct atgataaatt tcagactcaa      1200
     acaccttttt tataaagatg acacctgcgt ggatgataaa cgtgtgagaa gattttttac      1260
     gatcccttac attgagtccg tatcagaaaa attttcgtct ttctcatgta agttcgactg      1320
     cagtgttgcg ttcacaatcc cttccaaact gaacaaattt ataactactg gcaaagacca      1380
     tacagagcgt ctttcttgta atgacgtagt ttataaaatt aactgtaagg actgcgattc      1440
     ttcttacgtg ggacagacga aacgccaatt aaaaacaaga gttagcgaac ataaagcaga      1500
     cattaggaag gccagttctc cttcagttat ttcgctacac cgcatcggag aaaatcacga      1560
     attcgattgg gagaacgtgg aaattttaga caaggaacca tcttatgtca aaagatccat      1620
     atccgagatg ctacacatca aaaatcaaat gcacggactc aataaacaaa gcgacacgga      1680
     acttctctcg gatgcgtatc ttcctatcct cgagcgtatt cccccttctt aggttcatca      1740
     cccctcctcc ttctattcct ttcgttcggg ccaccgaggc tatctcgttt cggtccttat      1800
     tattcgtatc tattctcacc gagatgtaac atcccatctc aaggctgtga cacgagtttt      1860
     ggtgcttaga ggtattttgt atataatttt cgcttcggct tatttccttt ttttcccttt      1920
     tttgttgaat ttacattaat ttatataagc gtttttttta caattttata tctaatgact      1980
     tgtacagctt ccatttttat tcttttttat ttatttattt aattttttat tgattttccg      2040
     tttattcncc ttttttaatt anttaatttt tatggttgtt tgccacaagt tttaaagtca      2100
     tcattttaat atctttctct tatttattta tttatttgtt agcaaccaat ctatgtggtt      2160
     tcacgaaact cttgtctcgg cacacgctct gtga                                  2194
//
ID   Penelope-2_TrVa repbase;    DNA;    INV; 4536 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-2_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-4536
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 627-627 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. This family is inserted in (TA)n
CC   microsatellites. It includes terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           1789..4323
FT                 /product="Penelope-2_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MPNMGFYRFVEQLHGHGVVQSLKDCTQLSRKLIHCAC
FT                 RKMFLIECRRWRLVPDFINFGYKHIRSGMKTKLGKCMKMIENFKFALLNVC
FT                 IDDAHAEQSVNFRRLGGVLELLRGKLPEFVLMDFIWNLTVSNYKLKMRTEQ
FT                 RLQKKLSSLLMIANQKYQEKFAPFIIKKDAWLENLSNCDLPDYVGRVLCLG
FT                 PLFSIPFFKMDGEQSCLKPIPLEKIIVEVESKIRFESYPIVSSIRSKVVQT
FT                 INNYYQQVKKVGAFERIQVSSVKKFSECFFTKKLKEDIVKTHAFLKRNRQI
FT                 MVIRADKSNKTVVINEQDYNDKMCAVLNDTATYKVIKNSLVPSQMGKNNCI
FT                 IKNWYDKNWISKAVAESLKTTSAMVSRIYGLIKLHKENTPIRPIVSTIGSP
FT                 YYFVSKFFSSILSKIVGKTEWHVKDSFSFFKEVNGLEIPENFKLISLDVVS
FT                 MYTNISVDLAIECVKKRWNEIEALCSIPQDQFLYLLKVSISSTVFQFQDKY
FT                 YHQISGLAMGGSVSAVLANIVMEDLELTVHSTTNALIFIYKRFVDDLFLCV
FT                 HQNEVQNILEFFNGQSPMLKFTLEEEQNGSLNFLDMKLGRHQGKIVCKWDQ
FT                 KPTASGRYLNFLSVQPFAFKRNVVHNLARRIIGLSDSQFHREVINYGKKML
FT                 VENCYPSSFVSRIFKKVQHEVTMERINVESVKKNIDLSKIVKLPYVPLLSE
FT                 NLAVVLDHYGYTVINCNFNNLEFLFSKLKAKRDNLQLSEVVYKIQCKDCEI
FT                 AYIGQTRQILGKRLNGHKYDQNEKTALHQHQNELQHNFDFENVKVLARETN
FT                 DFSRSLIEMICIVKERDMVCNYRADVDKLGVAYHHFFQPRPLE"
XX
SQ   Sequence 4536 BP; 1349 A; 813 C; 863 G; 1493 T; 18 other;
     aacgagaaga aaaatgggac acaaggctac gaaaacttaa aaatttaagg tgagacgttt        60
     cggactagaa caagtccatt ttcaatcaat aaaaacaata aaagcgaaaa cgcagtgagt       120
     gcctacaagg tgatagagca actgacaaaa gcaatgatca aggaggaaaa gacaaacaca       180
     gaccaaaaaa acatagagtg gactcactcc agtggccgtg gttggaaaaa atgatggtat       240
     gcaaccccca acttatcaac gtccgcccgg tagttgcaaa ccatgtctct ttccttaaca       300
     atgcagatca tttcaataag tgatcttgaa aaatcattgg tctccctcgc caaaaccttt       360
     acattttcaa aatcaaaatt atgctgtaac tcattctggt gttgatgcag ggccgtcttc       420
     tcattctggt catatctatg accattcaac cttttaccta aaatttggcg agtttgacca       480
     atgtacgcaa tttcacaatc tttgcattgg atcttataca ctacctctga aagttgcaag       540
     ttatcacgtt tagctttcag ttttgagaac aaaaactcta aattgttaaa attacaattg       600
     atgaccgtgt acccataatg atccaaaaca actgccaaat tctcagaaag caagggcacg       660
     tatggcaatt taacaatttt agacaaatct atgtttttct taactgactc aacgttgatc       720
     ctttccattg ttacctcacg ttgaactttc ttaaaaatgc ggctcacaaa actggaagga       780
     taacagtttt caaccaacat ttttttacca taattaatta cctctcgatg aaattgagag       840
     tcagataaac caatgatacg ccgggccaaa ttatgaacaa catttctttt aaaagcaaac       900
     ggttgaactg agaggaaatt aaggtacctt ccagacgcag ttggtttttg gtcccactta       960
     catacaattt taccctgatg tcgacctaat ttcatgtcaa gaaaattcaa agacccgttt      1020
     tgctcttcct ctaaagtaaa ctttaacatg ggggactgtc cattaaaaaa ttctaggatg      1080
     ttttgaactt cattttgatg tacacaaagg aagagatcat caacaaaacg cttataaatg      1140
     aaaattaagg cattcgtagt actatgaaca gtcaattcca agtcttccat aactatatta      1200
     gccaagacag cagaaacact gccccccatg gctaagccgc taatttgatg gtaatatttg      1260
     tcttgaaact ggaacacagt ggaactgata cttacacctc ctgcgsmwtc acasascttt      1320
     cacaccgttt ttttwcgcac ccwwtckmaa kgtstacttg cttgtawgca gttttcattg      1380
     accgwatcwt tgwcgtgcsa wtccgctttc cattgttact atttgttcgc cgcgcgctgc      1440
     gttatctgta ttcttattac ctgcgtttgg taggttcatg cgctcttgcc acgtctccta      1500
     ttgattggaa ttatttattt gtatttgtat tttatttttg tttttgtttt tttctggttg      1560
     tgtctgttgt tgtttctcgt gagtgtaacg gattaagcga tgcgtgacag gacttgacat      1620
     ttcattcacg tttttcgctt caggtttttt tttttttttt tttttttttt tttttttcac      1680
     caaaggctgg taaatgcctt ttctttccaa ttcaatagtg catacttgtg tgagcatttt      1740
     atttattggt tttctacgat ttctccatca ttatttgtga ctgacatcat gcctaatatg      1800
     ggtttttatc gtttcgtgga acaactacat ggccacggtg tagttcaatc tctaaaagat      1860
     tgtactcaac tcagtcgtaa attaattcat tgtgcatgca ggaaaatgtt cttgattgaa      1920
     tgccgcagat ggcggctcgt accggatttc atcaattttg gatacaaaca cattcgtagt      1980
     ggtatgaaaa ctaaattagg gaaatgcatg aaaatgattg aaaactttaa atttgcctta      2040
     ctcaatgtat gtattgatga cgcgcatgcg gaacaatcgg tgaactttag gaggttaggc      2100
     ggtgtgcttg aattacttcg cgggaaattg ccagaatttg ttttgatgga ttttatttgg      2160
     aacctcactg tgagcaatta taaactaaaa atgagaactg aacagcggct tcaaaagaag      2220
     ctttcctctt tattaatgat agctaatcaa aagtaccaag agaagtttgc tcctttcata      2280
     attaaaaaag atgcttggtt ggaaaacttg tcaaattgtg atttacctga ttatgttggt      2340
     cgtgttttgt gtttagggcc gctgttttct attccatttt tcaagatgga tggagaacag      2400
     agttgtttaa agcctatacc gttggagaaa atcatcgtcg aagttgaaag taaaatcaga      2460
     tttgaaagtt acccgattgt atcaagtatt cggagtaaag tagtccagac tattaataac      2520
     tattaccaac aggttaaaaa agttggtgct tttgaaagga ttcaggtttc gtccgtcaaa      2580
     aaattttctg agtgtttttt tacaaaaaaa ctgaaagagg acatcgttaa aactcatgca      2640
     tttctgaagc gtaatcgaca aataatggtt atccgcgcgg ataagtccaa taaaaccgtt      2700
     gtgattaatg agcaggatta caatgataaa atgtgtgccg tgttaaatga cactgccacg      2760
     tataaggtca tcaaaaattc attggttccg tcgcaaatgg gtaaaaacaa ctgcatcatc      2820
     aagaattggt acgataaaaa ttggatttca aaagccgtcg cggagagcct caaaactaca      2880
     tctgctatgg tttcaaggat ctacggttta attaaattac acaaagagaa cactccgatt      2940
     cgacccattg ttagcaccat tggttcgccg tattactttg tttccaagtt tttctcctca      3000
     attttgtcca aaattgttgg gaaaacggaa tggcatgtca aagattcctt tagtttcttt      3060
     aaggaggtca atgggttgga aattccggaa aatttcaaat taatctcttt ggatgttgtg      3120
     tctatgtata caaacatatc agtagacctt gcgattgagt gcgtaaaaaa acggtggaat      3180
     gagattgaag ctctgtgttc cattccgcag gaccagtttc tttacctcct gaaagtaagt      3240
     atcagttcca ctgtgttcca gtttcaagac aaatattacc atcaaattag cggcttagcc      3300
     atggggggca gtgtttctgc tgtcttggct aatatagtta tggaagactt ggaattgact      3360
     gttcatagta ctacgaatgc cttaattttc atttataagc gttttgttga tgatctcttc      3420
     ctttgtgtac atcaaaatga agttcaaaac atcctagaat tttttaatgg acagtccccc      3480
     atgttaaagt ttactttaga ggaagagcaa aacgggtctt tgaattttct tgacatgaaa      3540
     ttaggtcgac atcagggtaa aattgtatgt aagtgggacc aaaaaccaac tgcgtctgga      3600
     aggtacctta atttcctctc agttcaaccg tttgctttta aaagaaatgt tgttcataat      3660
     ttggcccggc gtatcattgg tttatctgac tctcaatttc atcgagaggt aattaattat      3720
     ggtaaaaaaa tgttggttga aaactgttat ccttccagtt ttgtgagccg catttttaag      3780
     aaagttcaac atgaggtaac aatggaaagg atcaacgttg agtcagttaa gaaaaacata      3840
     gatttgtcta aaattgttaa attgccatac gtgcccttgc tttctgagaa tttggcagtt      3900
     gttttggatc attatgggta cacggtcatc aattgtaatt ttaacaattt agagtttttg      3960
     ttctcaaaac tgaaagctaa acgtgataac ttgcaacttt cagaggtagt gtataagatc      4020
     caatgcaaag attgtgaaat tgcgtacatt ggtcaaactc gccaaatttt aggtaaaagg      4080
     ttgaatggtc ataaatatga ccagaatgag aagacggccc tgcatcaaca ccagaatgag      4140
     ttacagcata attttgattt tgaaaatgta aaggttttgg cgagggagac caatgatttt      4200
     tcaagatcac ttattgaaat gatctgcatt gttaaggaaa gagacatggt ttgcaactac      4260
     cgggcggacg ttgataagtt gggggttgca taccatcatt ttttccaacc acggccactg      4320
     gagtgagtcc actctatgtt ttttttggtc tgtgtttgtc ttttcctcct tgatcattgc      4380
     ttttgtcagt tgctctatca ccttgtaggc actcactgcg ttttcgcttt tattgttttt      4440
     attgattgaa aatggacttg ttctagtccg aaacgtctca ccttaaattt ttaagttttc      4500
     gtagccttgt gtcccatttt tcttctcgtt tatatc                                4536
//
ID   Penelope-30_LMi repbase;    DNA;    INV; 2783 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-30_LMi.
XX
NM   Penelope-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2783
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3437-3437 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           249..2306
FT                 /product="Penelope-30_LMi_1p"
FT                 /translation="MIWDTVKSELDEQLQVEFLNLKSRQDQKLKKLMRQID
FT                 CRVNNAQNVDNFQFYPRVVNETDISFNDEELRLLNKGLKFNVQPSLNDKTV
FT                 KELIVATKMAVDVAKLNENEKGHVGYKLANAIKAETNKSCNSMHNNSDHKT
FT                 VTSINDKLISNKAIVTKADKGNTTVIVSEEQYINKTLQFFSENGVTEIAKD
FT                 PTKKVQAELKQLLKRTSFLLTEKEKFQCYVMNPTAPRLRSQLKVHKNGHPI
FT                 RAIVNSMKGPLCKITKKLDKILKEFYVFGDNFSVSNNTTLINEIKDKPIAD
FT                 TSHLMSLDIKNLYANVPVDEAVELIKANLLKHKRLSQQEIVEFIDLLQFIL
FT                 KYNYFAFNGKFYIQKDGLAMGSSISGTIADIFINNLENRLFTNMQHPVDKI
FT                 LYYKRYVDDTLLLIDGGQTEITEIVNKFNSLHEKIEFTVEQEKDGTLQFLD
FT                 LNITKQDGRHLFKVYRKPTTTDILIHNSSCHPNGQKLSALRCLVDRAFKVP
FT                 MNEKDRTTEFNIIRQLAKVNGYQENVVNNLIRKKQRAKSNKNGTXNIKRVM
FT                 VPYFGNLSQKVANILKPFKVEAAFKTNNTLHHKLRNNLNQETDKYDKAGVY
FT                 KIQCSSCNANYIGQTGRSFKVRYKEHMDAFRLNNFDKSAVAMHIRETGHPL
FT                 KRIEDDLKILHKQDKGRKLDLLEQLEITIHNAKATFH"
XX
SQ   Sequence 2783 BP; 983 A; 495 C; 533 G; 771 T; 1 other;
     tcttaaacga aaatggctaa aaactacggc caacataaat ttcaacaagg cttgtgtaaa        60
     gaataaatgt atcccgaact atatcaagtt taagatatgt aatccaaagt ccaatgtagg       120
     tagggcagtg gttgataaag cgcggaaatt ttggttgaat tccgaaatta aattcctcca       180
     taagaaaaaa gattgtatta gtgggcaatt acttaaggcg catttagaag cagctagtgc       240
     ggtacacaat gatatgggat acggttaaat ccgaacttga tgaacaacta caggtcgaat       300
     ttctcaattt aaagagtagg caggatcaga aactaaagaa gctgatgaga caaattgact       360
     gtagagtaaa caacgcgcaa aatgtagaca actttcagtt ttaccccaga gtcgttaatg       420
     aaactgacat ctcttttaac gatgaagagt taaggctgct gaacaaaggt cttaaattta       480
     acgtgcaacc tagcctaaat gataaaactg taaaagaact tatcgtagcg actaaaatgg       540
     cggtagatgt tgctaaactg aatgaaaacg aaaaaggaca cgtgggatat aaactagcta       600
     acgccatcaa ggccgaaacg aataaatcct gtaacagtat gcataataac agtgatcaca       660
     aaaccgtaac ctccattaac gacaagctca tctctaataa agcgatcgtt actaaggccg       720
     ataagggcaa tactactgtt atcgttagtg aagaacaata tattaataaa acactgcaat       780
     tcttttcaga aaacggtgtg accgaaatag ctaaagatcc aactaaaaag gtacaggcag       840
     agctaaaaca gttgcttaaa aggacgtctt tcctattgac cgagaaagag aaatttcagt       900
     gttacgtcat gaatcccaca gctcctcgac taagatcgca attaaaggtc cataaaaatg       960
     ggcatcctat tagagctatc gtaaattcaa tgaagggccc cttatgcaaa attacgaaaa      1020
     aactcgataa aattttaaag gagttttacg tatttgggga taatttttca gttagcaaca      1080
     acactacgtt gatcaatgag attaaagata agcctatagc cgatacatcc caccttatgt      1140
     ctcttgatat taaaaattta tatgcaaatg ttccggttga cgaggccgtc gagttgatta      1200
     aagcaaactt acttaaacac aagagactat ctcagcaaga aatcgttgaa ttcattgacc      1260
     tacttcagtt tattctgaaa tataactatt ttgcttttaa cgggaaattt tatatacaaa      1320
     aagacggact ggctatgggt tcaagtattt caggaacaat agcagacatt tttattaata      1380
     acctagaaaa ccggcttttc acaaatatgc agcacccagt tgataaaatc ttatattata      1440
     aacgctacgt tgacgatacg ttgctattga tagatggagg acaaactgaa attactgaaa      1500
     tagttaataa atttaacagc ctacatgaga aaatcgaatt taccgttgaa caagagaagg      1560
     atggcacact tcagttcctt gaccttaaca ttacgaagca ggatggtaga cacttattta      1620
     aagtatatag gaaacctaca acaaccgaca ttctaataca taacagctct tgtcacccta      1680
     atggccaaaa actttctgcc ctacgctgtt tagtcgatag agccttcaaa gtgccaatga      1740
     acgaaaaaga cagaaccact gaatttaaca ttataagaca gcttgctaag gtgaatggtt      1800
     accaggaaaa cgtagtgaat aacttaatac gaaagaaaca gcgtgcgaaa tcaaataaaa      1860
     atggcacgga waatatcaag agggtaatgg ttccgtattt tggtaatcta tctcagaaag      1920
     tggccaacat actaaaacct tttaaagtag aagctgcttt taaaactaat aatacgttac      1980
     atcataaatt acggaataac ttaaaccaag agactgataa atatgacaaa gcaggggttt      2040
     ataagataca gtgtagtagt tgcaatgcca actacattgg tcagaccggt agatcgttta      2100
     aagttaggta caaggaacat atggacgcct tccgacttaa taattttgac aagtccgctg      2160
     tagctatgca tatccgcgaa actggccacc cattaaagcg gattgaagat gaccttaaga      2220
     ttttgcataa acaggataag ggaagaaagt tagatctgct agaacagctg gagattacaa      2280
     tacataacgc aaaagcgacg tttcattaaa tgaacaagtt caagcaatac atacagcttt      2340
     tttaaaaact ttgtggacct attataacaa aagtcgttta ttttaaattt caacctctgt      2400
     cttactgtgc aaatgatttc gtgacacctg aatgtaccca ctagcttgtg gatgatcttt      2460
     ggaatttaga ggtctttgtt ttcatgtgca tacgtgcgcc ccactcgtgt tgttgactcc      2520
     gtgcatttcg ctagtgttat gcgccgccag tgctggggtc tgtttgaatc ctgacgaagc      2580
     acagtatgct gaggaccttt ctgcgtagac acggttacaa gggaagtaac cacgttttct      2640
     tttattacgt tttagatttt tattgtctca ggttttaaga ttcttgtata gattatctga      2700
     tgatgagggc ttgacccttg aaacgcgtca tattttagtg tttttacacg atctctgtgg      2760
     ttgagcctac ttgacaaaat aat                                              2783
//
ID   Penelope-31_LMi repbase;    DNA;    INV; 2326 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-31_LMi.
XX
NM   Penelope-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2326
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3438-3438 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           471..2033
FT                 /product="Penelope-31_LMi_1p"
FT                 /translation="MSSLLNDPAYIRLQSDPTDKIKRKTLSLLKSGTLPEE
FT                 LRKELHPGAAVPPRLYGLPKVHKDGVPLRXIVCNLGAPTYNLAKYLTSVLS
FT                 PFVGKCEHHIFNSMDFISRLKSLRLDLSDLLVCFDAVSLFTRVPLDESLSL
FT                 ISERLDDELVKLCQHVLTSTYFSFNGNFFEQKDGVAMGSPLSPIVANLYME
FT                 DFEDRALRTSALQPTCFWRYVDDTFFIWPHGRDTLDRFLDHFNCLHPNIKF
FT                 TMEIERDGKLPFLDVMVYKKHDGTLGHTVYRKPTHTDRYLHAKSCHPPFQR
FT                 NGVLKTLVRRAYAISDADSLTPELEHLKTVFKENGYSDKQIHRAMEFGPSP
FT                 EVHEGEYKAVAFIPYAGGVSFKVGRLLKNFNIKSVFRPPSKIRALLGSVKD
FT                 DLGLRKPGVYRIPCQCGKAYIGRSVRTVKDRCVEHCRHMRLLQPEKSAVAE
FT                 HCLTEGHKMEFDETLIIANISGFWDSVYKEAIEIRLADNLINRDKGFPLSR
FT                 SWNPLLKNIKLQRSVTKPAPVFDQP"
XX
SQ   Sequence 2326 BP; 630 A; 543 C; 554 G; 593 T; 6 other;
     gatgcgtggg agtgggcgac acctccactt ggtcactatc tgactggaca catggagcgc        60
     cgtttccaga cagtcatcta aatttgaagg cttctttctc actctacatc gtctgaaagt       120
     gaagtacgta gacgtactgt gatcaatctt tccagtaaag agttggatgg accaatggtg       180
     gcagtgttgg agaagggact gaattttgct cctaccccaa gaaggcttcc tgtcagagaa       240
     tttgtctgct ctatggaama agcagtatac agtctccctg ackataaagc ggaagaaatc       300
     aggcaaaacg tttcccacac attggtsgkg ctcggccacc gmgggacaac atctcttctg       360
     cggagagggc agctattcgt tccctcagga acgacgatga attagtggta ttaccagcgg       420
     ataaggggaa cgcaaccgtc gttttgacaa gggaagatta tgtcgctaaa atgagttctt       480
     tactcaacga cccagcgtat ataagactgc aaagcgaccc cacagataag atcaaacgca       540
     agactctttc tctcttgaaa tctggcacgt taccggaaga attacgcaag gagcttcatc       600
     cgggtgctgc agttccgcct aggttgtacg gtctcccaaa ggtgcataaa gatggagtgc       660
     cattacgtcs catagtgtgt aatctgggtg cacctacata caacttggca aagtacctaa       720
     catcggtact cagcccattt gttggtaaat gtgaacatca cattttcaac tcgatggatt       780
     tcatttcacg actgaagtcc ttgcggctgg acctgtcaga tttacttgtt tgtttcgacg       840
     cagtttccct tttcacacgg gtccctttgg atgaatctct gagtctaatc agcgaaaggt       900
     tggatgatga gctggtgaaa ctctgtcaac atgttcttac gtccacatac ttctcattca       960
     atggcaactt ttttgaacag aaggacggtg tagctatggg gagccctcta tcacccatag      1020
     ttgccaactt atatatggaa gactttgagg acagggccct gagaacctct gctttgcaac      1080
     ctacgtgttt ttggcgttac gtcgatgaca cgttctttat ctggccccac ggacgtgata      1140
     cgcttgaccg atttttggac cacttcaact gccttcatcc taatattaaa tttactatgg      1200
     agatagaaag ggatgggaag ctcccatttt tggacgtaat ggtttataaa aaacatgatg      1260
     gcaccctggg acacacggtt tatagaaaac caacacatac cgatcggtat ttgcatgcca      1320
     aaagctgcca tccaccattc caacgcaacg gtgtccttaa aaccctggtt cgtagggcat      1380
     atgccatctc agatgcagat agtttaacac ctgaacttga acatctgaag accgtcttta      1440
     aagaaaatgg ttattctgac aaacaaattc atcgggccat ggagtttgga ccatcgccag      1500
     aggttcacga aggggaatat aaagcggtgg cgttcattcc ctatgctggg ggcgtctctt      1560
     tcaaagttgg aagactttta aaaaacttta atatcaagag tgtttttcgc cctcccagca      1620
     aaattagggc actgcttggc tctgtaaaag atgacctagg tcttaggaag ccgggtgttt      1680
     atagaatacc ttgccaatgc ggcaaggcgt acatcggccg atctgtccgc actgtcaaag      1740
     atagatgcgt ggaacattgt cgccacatga gactgctgca gcctgaaaaa tctgctgtgg      1800
     cagaacattg tttaactgag ggacacaaga tggaatttga cgagaccctc ataattgcta      1860
     acatctccgg tttttgggac agtgtctaca aagaagcaat tgaaattaga ttggcggaca      1920
     atctgattaa ccgagacaag ggttttcctc tgagcagatc gtggaacccg cttttaaaaa      1980
     acatcaaatt gcaacgttct gtgacgaagc cagcgccagt gtttgatcaa ccataatcga      2040
     tatatcgttg caccgatgtc ccactagggg cggcgccact agtacacgtc ccgtacgtag      2100
     caaccttgga aggcggcgca tgcgccgcac acacgcgcga cgcctatata ggacggagaa      2160
     tacggctcta ccctcagtac tcgacgggac tcagcagcag cagcgttcct gaggatggcg      2220
     gacagttgga tcgccgaaat atcggaccag tttgttctta gtatccggca gcatacccgg      2280
     aaggactatc aagatttact acgccgggaa agccttagat gccaca                     2326
//
ID   Penelope-32_LMi repbase;    DNA;    INV; 1967 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-32_LMi.
XX
NM   Penelope-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1967
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3439-3439 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..1094,848..1789)
FT                 /product="Penelope-32_LMi_1p"
FT                 /translation="WNKHFARCLVNYRQIRRETSHSIQATKTEHDKSRTQW
FT                 PSELRNDPLIVVLPADKGNAAVIMERATMTRRFERCWRRRHMQKLSRDPTS
FT                 KILRKTSELLKRSSLEDSVIKNLLPQAPRPPTLYGLPKVHKMNTPLRPIVS
FT                 TIGAPTYRLAKHLANLLTPHVGHCEHHIKNTADFISRIKCLRLGEEDMMVS
FT                 FDVVSLFTNVPVKDCIDLLSQLFDDTVVDLFKHTLTSSYFLYGGEYFNQTD
FT                 GVAMGSPLAPVMANLFMEHFEDIALDTAPVRPSCFYRYVDDTFVVWPMDVK
FT                 NSVNSSTTSIASMTRSSSRWRWRKRVPCRSLTSSSAVKQMDVSAMVFTENP
FT                 PTQTGTCTPQAIIIHRRNSLFHVRCLAHGREKLGEFFDHINSIHDKIKFTM
FT                 EVEKEGALPFLDVLVSRKANGCLSHGVYRKPTHTDRYLHATSHHHPSQKQS
FT                 VLRTLVHRAEVVSDTENLQKELSHLRKVFRDNGYSNSQITKAIFPKTQKQK
FT                 TPEEDSKKLAFLPFCGSVTGKISRLLKRHKIDSVFRAPSKIRQLMRPVKDD
FT                 VGLRTPGVYKIPCGCGQFYIGQTVRTIEQRCVEHERCYRLRYPEKSAIVEH
FT                 ALENRHRIAFEETSIITRTNSFWDSVIKEAIEIKIADNTLNRDGGLQLSTA
FT                 WNPAIGRLKRARQARDQNIAFYGHVAEHQ"
XX
SQ   Sequence 1967 BP; 591 A; 468 C; 468 G; 440 T; 0 other;
     tgtggaacaa gcacttcgca agatgtctag tgaactacag acaaattcgt cgggaaacaa        60
     gccattctat ccaagccacc aaaacagaac atgacaagag cagaacgcaa tggccttccg       120
     agctcaggaa tgatcctctc atcgtagttt taccagctga caagggcaat gcagccgtca       180
     ttatggaacg agcaactatg acgagaagat tcgagagatg ctggaggagg agacatatgc       240
     aaaaattatc gagggaccca acttccaaaa tactgaggaa gacgtccgag ctgctcaagc       300
     gatcttcact ggaagacagt gttattaaaa acctacttcc acaggcacct cgaccaccta       360
     cattgtatgg actcccgaag gttcataaaa tgaacacacc tcttcgtcca atcgtgagta       420
     ccattggtgc gccgacttac agacttgcaa aacatctggc caacctcctt actccacacg       480
     tcggtcactg tgagcaccat atcaagaata cggccgactt catcagcaga atcaaatgct       540
     tgcgacttgg agaagaggat atgatggtca gctttgatgt ggtgtcattg ttcacaaacg       600
     tccctgtcaa ggactgtata gatctgctct cccagttatt tgacgacact gttgtggatt       660
     tatttaagca tacactgaca tcatcgtatt tcctgtatgg tggagaatat tttaatcaaa       720
     ctgacggcgt cgcgatggga agcccattag ctccagttat ggcaaacctg tttatggagc       780
     actttgaaga catcgccctg gacacggcac ctgtaaggcc tagctgtttt tatcggtacg       840
     ttgatgacac gttcgttgtc tggcccatgg acgtgaaaaa ctcggtgaat tcttcgacca       900
     catcaatagc atccatgaca agatcaagtt cacgatggag gtggagaaag agggtgcctt       960
     gccgttcctt gacgtcctcg tcagccgtaa agcaaatgga tgtctcagcc atggtgttta      1020
     cagaaaaccc acccacacag accggtacct gcacgccaca agccatcatc atccatcgca      1080
     gaaacagtct gttttaagga ccttggtgca ccgagcggaa gtagtgtcag acactgaaaa      1140
     tctgcaaaag gaactgagcc acctacggaa agtttttagg gacaacggct acagcaacag      1200
     ccagattacg aaagctatct tcccgaagac acagaagcag aagacccccg aggaggactc      1260
     aaagaaactt gcctttttgc cgttttgtgg ctcagtcact ggaaagatta gccgactcct      1320
     taagagacac aagatcgact cggtcttcag ggctccttca aaaatacgtc agttgatgag      1380
     acctgttaag gatgatgtag gcctaagaac accgggagta tataaaatac cttgtggttg      1440
     tggacaattt tatataggac aaacagtgcg cactattgaa cagcgctgtg tggaacacga      1500
     acgatgttat cgtttacgtt atcccgaaaa gtcagcaatt gtggagcatg cacttgaaaa      1560
     cagacatcgt attgcgtttg aggagacatc cataattaca agaacgaaca gtttctggga      1620
     tagtgtaata aaagaggcga ttgagatcaa aatagctgac aatactctta atagagacgg      1680
     cggcttgcag ctgagcacgg cttggaaccc ggcgatcgga aggttgaagc gggcgcggca      1740
     ggcacgcgac caaaacattg ccttttatgg tcatgtcgcg gagcaccagt gacgtcacag      1800
     cccgcagtgc agctatataa ggacgacagc agcaatcact cgacagtcaa ccacttgaca      1860
     atggccgagg agatctcggc cgaaacgtcg tggacagtaa accacatgac gcggctggaa      1920
     gcccgagaaa attttatcaa cataactcgc gcgaaacaat gcattca                    1967
//
ID   Penelope-33_LMi repbase;    DNA;    INV; 2679 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-33_LMi.
XX
NM   Penelope-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2679
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3440-3440 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(118..705,789..1163,1079..1825,1858..2079,
FT                 2152..2358,2367..2678)
FT                 /product="Penelope-33_LMi_1p"
FT                 /translation="MHIKYLFGEEMVSCVHSLDKLRQQRARLLSSLSFLLK
FT                 CRDHGIVPKFARLVHFVKNAAVNRILHKAGSAIVKERIRFTRRKLDSVSED
FT                 LYQLHLKIAPVLSPDSWNWVDGTTWAKSDWVHEVATRRQMTKYSRLDHLLR
FT                 KLCCSTPCYKFDGKGSGRSHVSVLSKGLNFAPTPKTCQYHLSSVPLKKLSD
FT                 HYQRISPYENSVRTLTRVLRADKGNATVLLPQEDYNEKIFGLLSSGAYRKI
FT                 NKDPTSKVTIRTAALLNASSLETEVIRSLKVRGAVPPRFYGLPKVHKLDKD
FT                 ERLEDLPMRPITSTLVHLPTFLPSIWLHYASGGSAYAANNKHIGSPTYLSA
FT                 KYLASLLKPLVGKCSHHIRNSVDFIQRLSHLRLNSTDVLVSFDVVSLYTKV
FT                 PVQDSLSLIGQHFDKDITALFEHVLTSSYFQFNGDFMSRLTELPWEAPYPL
FT                 WWRISSWKTSRTRPGLASFKPTVFWRYVDDTFVVWPHGKDELHRFLDHLNS
FT                 IHANIKFTMEMEKDGCLPFLDVLVRRKADGTLGHAVYRKPTHTNLYLHASS
FT                 CHHPSQTAGFLRHWCTEHIVYRRRAFSKRMDIPATDSQSIRCEPRMQARTW
FT                 KKKIAVRSRAFLPYVGALSSKISRILTNIVLRYLPATCEDCSLIGSADNRT
FT                 VHERCVEHEDILAYYSQTSQLWRTLHRRHSMNYSDVKILTPISSFWDAIFK
FT                 EAEIRLAETEIRFTRLEPCTWSMKLQRDVRCCRRRAYIDKESTSATGGARV
FT                 WYFDQHLDRMRMPRDGYKAAPGTSSAVLTHSEDGRTVRGRNISGRSEFARL
FT                 HPEIYGLFTPEKLKI"
XX
SQ   Sequence 2679 BP; 757 A; 590 C; 647 G; 685 T; 0 other;
     cggcagtctt agactcactc tgaatggccg agcggccaaa tattagtgga agagtggatt        60
     tgcacggctg caccccgaaa tttattggat tactccttcc gccgtgaaaa gttgaaaatg       120
     cacatcaagt acctcttcgg ggaggagatg gtttcatgtg tccacagttt ggacaaacta       180
     cgacaacaaa gagcaagact gttgagctct ttgagtttct tactgaagtg ccgggaccac       240
     ggaattgttc caaaatttgc aaggttggta cactttgtca agaatgctgc agttaacaga       300
     attttacata aggctggttc tgctattgtt aaagaaagga tccgttttac tcgtagaaag       360
     ttggatagtg tctctgaaga cctgtatcaa ttacatttga agatagcacc tgttttatct       420
     cctgactctt ggaactgggt tgatggtacg acatgggcca agtccgactg ggttcatgaa       480
     gtggctacaa gaagacagat gaccaagtac agccgattgg accacctcct caggaagctc       540
     tgttgttcga cgccctgtta taaatttgac gggaaaggat ctggacgaag ccacgtctct       600
     gtcttaagta aagggctaaa ttttgccccc actccaaaga cttgccaata ccatctttca       660
     tcagtgccat tgaagaagct gtccgaccac tatcagagga tcagctgaag aaattagacg       720
     tgaaagctgc cgagcaatta tgaaatatcg tccacaaaga agtaatattt ctaaggaaga       780
     gaggttagcc atacgaaaac tccgtgagga cactgacacg tgttctacgt gctgacaaag       840
     gcaacgccac cgtcctgctg cctcaggaag actacaatga aaagatcttt ggtttactaa       900
     gttctggcgc gtaccggaag atcaacaaag acccaactag caaggtgaca ataaggactg       960
     ctgccttact gaatgcttcg tcactagaaa cggaagttat aagaagttta aaagtgcgag      1020
     gtgcagtacc accgagattt tatgggcttc ctaaagtcca caaactggat aaggatgagc      1080
     gtctggagga tctgcctatg cggccaataa caagcacatt ggttcaccta cctacctttc      1140
     tgccaagtat ttggcttcac tattaaagcc attggtggga aaatgtagtc accacatccg      1200
     aaattctgta gattttattc agagactcag ccacctcagg cttaatagta cagatgtgct      1260
     ggtgagtttt gacgtggtat cattatatac caaggtacct gtacaggatt ctctttctct      1320
     tattggccaa cattttgaca aggacatcac agccttattt gagcatgtac tgacgtcatc      1380
     ttatttccag tttaatggtg attttatgag cagattgacg gagttgccat gggaagcccc      1440
     ctatcccctc tggtggcgaa tttcttcatg gaagacttcg aggacaaggc ctggactcgc      1500
     aagttttaaa ccaacggtct tctggagata cgtggatgac acgtttgtag tatggcctca      1560
     cgggaaggat gagttacatc gatttcttga ccatctgaac tccatccacg ctaatatcaa      1620
     atttactatg gaaatggaaa aggatggctg ccttcctttt ttggatgtac tcgttcgtcg      1680
     taaagctgat ggcacattag gacatgcagt atatcgcaaa ccgacgcata cgaatctgta      1740
     tttacatgcc agcagctgcc atcatccttc acaaaccgca gggttcttaa gacattggtg      1800
     cacagagcac attgtatatc gacgatgaca acttgcagga agagctcaca cacctgaagg      1860
     gcattttcaa agcgaatgga tattccagca acagattcgc agagcattcg atgtgagccg      1920
     agaatgcaag cacggacgtg gaagaagaag atagcagtca gatcgagagc cttcttgccc      1980
     tacgtgggtg ctctttcgtc aaagataagc cgcattctca caaacatcgt gttaaggtat      2040
     cttccggcca cctgtgaaga ttgcagcctt atcgggtcgt gaaagatgat ttgttgcttc      2100
     gcaagtcggt gtgtaccaga tcccatgcgg aaattgtgag ttcatatata ggcagacaac      2160
     cgcactgtcc acgagagatg cgttgaacac gaagatatac tcgcctatta cagccagaca      2220
     agtcagctgt ggcgaacatt gcatagaagg cattcaatga attacagtga tgtgaagatt      2280
     ttgacaccta tatcttcgtt ttgggatgct atatttaagg aagctgaaat tagactggcc      2340
     gaaacagaga taaggtttta atttagacaa ggctggaacc ctgcacttgg agtatgaaat      2400
     tgcagagaga cgtaaggtgt tgccgccgcc gagcatatat cgataaggaa tcgacttccg      2460
     ccacgggggg cgcacgcgtg tggtacttcg accagcatct ggaccgcatg cgcatgcccc      2520
     gcgatggcta taaggccgcg cccggcacct cgtcggcagt cttgactcac tctgaagatg      2580
     gccggacggt acgcggccga aatattagcg gaagaagtga atttgcgcgg ctgcaccccg      2640
     aaatttatgg attatttacg cccgaaaagt tgaaaatca                             2679
//
ID   Penelope-34_LMi repbase;    DNA;    INV; 2432 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-34_LMi.
XX
NM   Penelope-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2432
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3441-3441 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           881..2134
FT                 /product="Penelope-34_LMi_1p"
FT                 /translation="MDFIRRLKSLKLGPSDLLVSFDVVSLFTRVPLEESLS
FT                 LISEILDEEVVKLCRHVLTSTYFSFGGNFFEQKDGVAMGSPLSPIVANLFM
FT                 EDFEDRALRTSALQPTCFWRYVDDTFFIWPHGRDKLNRFLDHFNCLHPNIK
FT                 FTMEVESDGKLPFLDVMVYKKDDGTLGHSVHRKPTHTDRYLHASSCHPPYQ
FT                 RNGVLRTLVRRAYAISDADSLPSELEHLTTVFKENGYSEKQIRRAMQFGPS
FT                 PKVLEEEYRALAYIPYAGGVSFKIGRLLKSFNIKTVFRPPSKIRALLGSVK
FT                 DDLGLKKPGVYKIPCECGKAYIGRTLRTVHDRCVEHCRHTRLLQPDKSAVA
FT                 EHCLTEGHKMIYDETRIVTNTSGFWNSVYREAIEIRVTDNLINRDMGFPLS
FT                 RTWNPLLNNIKLQCSTRIPAPGTD"
XX
SQ   Sequence 2432 BP; 657 A; 546 C; 587 G; 640 T; 2 other;
     gccaataaag cactggttag agaactgatt cattttaccc tagamagctg gatattattt        60
     ccaaagattt attttatttg catctggact tgtcattgaa gctttctact gatgtttggg       120
     agtgggttga tgttccacat gggcatatca gactgggaac ataggagcgc cattaccaga       180
     cagtcctcta aatttgaacg gcttctttct cggcctagat cgtcagagat acacctaggc       240
     acactgtgtc aatctttcaa acaaggattt ggatggacca actgtgactg tgttggagaa       300
     aggcttaaac tttgctccca cgccaaggag tcttccggtt agagacatta tctgctctgt       360
     agaacaagca gtgcacagcc tccctgagga taaggcggaa gaaataagac aggaagtgtc       420
     ccacactttg cgtcgggtcg gccaccgcgg gataacatct cttctgcgga gagagcagct       480
     attcgctccc ttaggaatga tgatgaagtt gtagttttac cagcagataa ggggaacgct       540
     accgttgttt tgacaaggga tgattacgtc cttaaaattg atgacctact caacgatcca       600
     gcgtacgtaa gattacagag tgaccccact gaaaggatta agcgcaagac tctttcactg       660
     ttgaaaacga gcacattgtc agaagaactg cgcaagaagc ttcatcccgg tgctgctgtt       720
     cctcctaggt tgtacggtct tccaaaagtg cacaaggaag ggggtgccgt tacgccctat       780
     agtttctaat ttgggtgcac ccacatacam cctggcgaag catttggcgt ctattctcgg       840
     cccatacgtc ggcaagtgtg aacaccacat ctccaattct atggatttta ttagacggtt       900
     gaagtccttg aagctgggtc cttcggattt actcgtaagc tttgacgtgg tatccctctt       960
     tacacgggta ccactggaag agtccttgag tctaattagt gaaatactgg atgaagaggt      1020
     ggtgaagctc tgtcgtcatg tactgacgtc cacgtatttt tcttttggtg gcaacttctt      1080
     tgagcaaaag gacggagtgg ctatgggcag ccctttatca cccatagtcg ccaatttatt      1140
     tatggaggac ttcgaggaca gggcactgag aacttcagcg ttgcaaccaa cgtgtttttg      1200
     gagatacgtt gacgacacct ttttcatctg gcctcatgga cgtgataagc tcaatcgatt      1260
     tttggatcat tttaactgcc ttcacccaaa catcaaattt actatggagg tcgaaagtga      1320
     cggtaaactt ccatttttgg atgtaatggt ttacaaaaaa gatgatggca cccttggaca      1380
     tagtgttcac cgcaagccga cacatactga caggtatttg catgccagta gttgccatcc      1440
     accataccaa cgcaacggcg tccttagaac tctggtacgc agagcatatg ccatttcaga      1500
     tgcagacagt ttaccatcgg aactggaaca tctgacgact gtttttaagg aaaatggcta      1560
     ctctgagaaa cagattcgcc gtgctatgca gtttggacca tctccaaaag tgcttgaaga      1620
     ggagtatagg gctctagcct acattcctta cgccgggggc gtttctttta aaattggaag      1680
     acttttaaaa agttttaaca taaagactgt tttccgtccg ccgtccaaga ttagggcatt      1740
     gcttggctcc gtcaaagatg acctcggact caagaaaccc ggtgtttaca aaataccgtg      1800
     tgagtgtggc aaggcataca tcggccgtac gcttcgaact gtacatgata gatgcgtgga      1860
     acattgccgc cacacgagac tattgcagcc ggataaatcg gcggtagcag aacactgttt      1920
     aacggaagga cacaagatga tatatgatga aacccgcata gtaaccaata cctccggttt      1980
     ctggaacagt gtttacagag aagccattga aatcagggtg acggacaatc taataaatag      2040
     agacatgggg tttcctctta gtagaacatg gaatccatta ttaaataata tcaaattgca      2100
     atgttcgacc cggattccag cacctgggac tgattaatgt aaggtgcgat atatcgttgt      2160
     gccctgttcc actaggggcg gcgccaccag ccctgtctag gaggtagcaa ctgtgacggc      2220
     cggcgcatgc gccgtgcacg cgaccgacgc ctatatagga cgcggtactt cgatcttgca      2280
     ccagtattca gcgggactca gcagcagcag tttcctgaag atggcggaca gctgtaccgt      2340
     cgaaatattg aatcagtttg attttattat ccggcagaaa acccgcagag acttcgaaga      2400
     tttctgtcac gccgggaaag cctacgaagt ta                                    2432
//
ID   Penelope-35_LMi repbase;    DNA;    INV; 2598 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-35_LMi.
XX
NM   Penelope-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2598
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3442-3442 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(97..663,632..952,930..1178,1182..1433,
FT                 1372..1782,1816..2289,2199..2597)
FT                 /product="Penelope-35_LMi_1p"
FT                 /translation="MVCSFKLLQKERNKKAKLLNSLAFLQRCRDKNILPRF
FT                 AELRHPVKSKKTDRILRRAGMAIVRERIRYTRQELDKNARILLACHLKIAQ
FT                 ELSPHSWEWVDCSSYANCEVQKQQAAAKQLGKFDRLSEAQAAPKLTNNTRA
FT                 IVNLTEKVLDEVTTSVLMKGLNFAPVPRTIPKQDIISSVEEAIRGYPGRSK
FT                 KQFGATQEEAEQIRREICRIIDTSRLPKANITVAERKAICAPKDDADTMVL
FT                 PADKGNATVLMRTDNYQQKISSLLQDPAYRKLKRTHLDNDQENVALLRTQI
FT                 YQRQELRSTRGSEETAASQSANDTMPYGYPRSQDGVPLGQYWTPSIPTLWT
FT                 GQISGDTSKTPGGTLQPSREELCRFVRILKDIEYKRPTRELRRHLFVHEST
FT                 SSRRLAALNQHFEPEIVKLFEYALTTTYFKCNGEFYEQVDGVAMGSPLAPG
FT                 IANLYMEHFEEVALQTATPQGLQIFIWSTSRRWPYKLPLKPKHFFRYVDDT
FT                 FVIWQHGRQALDEFLEHLNSIHDSITFTMEVEENGCLPFLDILIRKKADGT
FT                 LGHSVYRKKTHTDLYLHATSCHHPAQRQTVLTTLVHRARVICDKEASQTNC
FT                 NTTQIVGLQEETDDKNREEREEQEEKQRLAFLPYLGPLSAKIGRLLGKSNI
FT                 KTVFRPPPKTKELLGSAKDPLKLNTPGSTALPANVVCSTLANAAMYLKRCE
FT                 EHIRRVRLGQTEKSAIAEHSMKENHTFDFENTKVLCRANSFWDSVIKESVE
FT                 IRVHEILLREHQGAVPSQQLLGQRHQRIRGNTGSRNLVNRDEGYQLSAAWN
FT                 PAMLQSPRARNRPAPRRRGLHGQDTSGAPPPTPPPPAQPPAAGGGGHAGIK
FT                 AGICTVSALRQKMMSMSLVETSQFEEPPPGWKPENSSS"
XX
SQ   Sequence 2598 BP; 789 A; 691 C; 640 G; 478 T; 0 other;
     gaaaccgccg cgcggctgga agcccgagaa ctcttcatta ggaatatacg ccgggaaaga        60
     ttacattctc atgtaaaaca cctctgcggg gaggagatgg tctgcagttt caagttactg       120
     cagaaagaac gcaacaagaa agccaaactt ctcaactcct tggctttcct tcagcggtgc       180
     cgagacaaga acatcttacc acgatttgcg gaattaagac atccagtgaa atcgaagaag       240
     accgaccgaa ttttacggcg agcaggcatg gccattgtca gggaacgcat tcgctacact       300
     agacaagaac tggacaagaa tgcacgaata ctgctcgcat gccacctgaa gattgcgcaa       360
     gaattatcac cacatagttg ggagtgggtg gactgcagtt cttacgccaa ttgtgaggtt       420
     cagaaacaac aagctgccgc aaaacagctc ggcaaatttg acagactctc ggaagctcag       480
     gcggccccaa agttgacaaa taacaccaga gctattgtga atttgacgga gaaagtccta       540
     gatgaggtca caacttctgt tctcatgaaa gggctgaact ttgcacctgt accacggact       600
     ataccaaaac aggacatcat cagcagtgta gaagaagcaa ttcggggcta cccaggaaga       660
     agctgagcag atccggaggg agatctgcag gatcatcgac acttcacgac tgccgaaagc       720
     caacataact gtggcagaac gtaaagctat ctgcgcaccc aaagatgatg cagacaccat       780
     ggtcctccca gcagacaagg gaaacgctac agtgcttatg cgcacagaca actatcaaca       840
     aaaaatctcc tctctgctac aagacccagc ctataggaag ctcaaaagga cccacctcga       900
     caatgaccag gaaaacgtgg cgctactaag aactcagatc taccagaggc agtgaagaaa       960
     cggctgcatc ccagagcgcc aacgacacca tgccttatgg ctacccaaga tcacaagatg      1020
     gggtacctct aggccaatac tggacaccat caattcccac attatggact ggccaaatat      1080
     ctggcgacac ttctaaaacc cctggtggga cactgcagcc atcacgtgaa gaactctgca      1140
     gattcgtgag aatactgaag gacatcgaat acaagagatg acctactcgt gagcttcgac      1200
     gtcacctctt tgttcacgaa agtacctctt caagacgcct tgccgctctg aatcagcact      1260
     tcgagcctga aatagtgaag ctctttgaat atgcactaac gaccacctac ttcaagtgca      1320
     atggggagtt ctacgaacag gtggatggag tggccatggg atctccacta gccccaggga      1380
     ttgcaaatct ttatatggag cacttcgagg aggtggccct acaaactgcc acttaaaccc      1440
     aagcacttct tccgctatgt cgacgacacc ttcgtgattt ggcagcatgg caggcaggct      1500
     ctggatgagt tcctggaaca cctaaacagc atccacgaca gtatcacctt cacgatggaa      1560
     gtagaggaga atggctgtct cccattcctg gacatcctga ttaggaagaa ggcagatggc      1620
     acgctgggcc attcagtata caggaagaag acgcacacag acctgtacct acatgcaact      1680
     agctgccacc atccggcgca acgccagaca gtactgacca ccttggtaca cagggcgcgc      1740
     gtcatttgtg acaaagaagc ctctcagacg aactgcaaca cctgagagag gttttccaaa      1800
     aaatgggtac agtgaacaca gattgtaggg cttcaagagg agacagatga caaaaatcga      1860
     gaagaaagag aagaacaaga agaaaagcag agactcgcct tccttccata tttgggaccg      1920
     ctgtcagcca aaatcgggag actactgggg aaatccaaca taaaaaccgt cttccgacca      1980
     ccaccgaaga cgaaagagct gctaggctca gcgaaagacc cacttaaact caacacaccg      2040
     ggatctacag cattgcctgc gaatgtggtg tgcagtacat tggcaaacgc agcgatgtat      2100
     ctcaaaaggt gtgaagaaca tatcagacgc gttcgactgg gacagacgga gaaatctgct      2160
     atagctgagc acagcatgaa agaaaaccac acctttgact tcgagaacac caaggtgctg      2220
     tgccgagcca acagcttttg ggacagcgtc atcaaagaat ccgtggaaat acgggttcac      2280
     gaaatcttgt gaacagggac gagggatacc aactgagcgc ggcatggaat ccagcaatgc      2340
     tgcaatcgcc gagagcgcgg aaccgtccag ccccgagacg cagaggactg catggacagg      2400
     atacgagcgg cgcccccccc cccaccccac ccccgccggc ccagcctccc gcggccggtg      2460
     gtggggggca cgcaggtata aaagccggca tctgcacagt ctcggcactt cgccagaaga      2520
     tgatgagtat gtcactcgtc gaaacgtcgc agtttgaaga accgccaccc ggctggaagc      2580
     ccgagaactc ttcatcag                                                    2598
//
ID   Penelope-36_LMi repbase;    DNA;    INV; 2070 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-36_LMi.
XX
NM   Penelope-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2070
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3443-3443 (2014).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(288..488,434..946,694..1887)
FT                 /product="Penelope-36_LMi_1p"
FT                 /translation="MPKKGPNSVIQQENVELLKNSGLPEEDVKSLRARAPR
FT                 PPRLYGLPKVHKEGVPLRPIVSAIGSLLTGGRCPIETDCERHRIPTYRLAK
FT                 YLTKLMAPIVGHCEHHIKNSEMFIEKLKQIRVGPNDILISLDVVSLFTKVP
FT                 VEDTLNLLAEXFPPETIKLFRLVMTTTYFLYGGKFYEMTDGMAMGSPLSPA
FT                 MANFFMEHLEERALNSAPLRPSVFFVMLTTFSWCGHMAWKLSATSWNTNNK
FT                 IVPPCNDDHLLLVWRQILRNDRWNGYGFSVVSCYGKLFYGTFGGTCFKFSS
FT                 SSSICVFRYVDDIFMVWPHGMEALGNFVEHMNSIHSNIQFTIETEEEGRLP
FT                 FLDVLIQRKSDGRLGHSVYRKPTHTDLYLSAQSFHHPVQKRAVLNTLIYRA
FT                 KTVSDEDHLESEIHHLKYVFRKNGYGPRDIRTAFAKKRKSRNVEDSRDEQP
FT                 TAFLPFCGATSSKIGRVLGRHGIKSIFRPPRKIKEMLRPVKDSLGLRIPGI
FT                 YNIPCECGSNYIGQSIRTVADRCTEHQRHIRNRELEKSAVAEHSLTNKHKI
FT                 LFDETTILSQACTYWDSVIKEAVEIRMCEDNFNRDSRYNLSGAWKRALDTE
FT                 KRQRHPVQRLDTTGAVAPPAQTSTPSATALRSRQPIRS"
XX
SQ   Sequence 2070 BP; 618 A; 484 C; 481 G; 485 T; 2 other;
     cgctcctgca ccacacacta taccgattgt ggaattcatc agtggagtgg aacaggcggg        60
     gcacctccac aagaagacgc cgacgaggta agacttacca ccagtcgcat tttagctcag       120
     ccaagctccg aaatctaata tcagtaaagc cgagagagat gggctccgtg cactacaaag       180
     agacgaagat cttgttgttc tcccagctga caagggaaat gctaccgtta ttctcaatgc       240
     tactgactac catagtaaaa tagcatcgtt gttagaagac agcacaaatg cctaaaaagg       300
     gacccaactc tgtcatacag caggaaaacg tggagctact gaagaattct ggcctaccag       360
     aagaagatgt gaaaagtctc agagctcgag ctcctagacc tcccagactt tacgggttac       420
     ctaaggtcca taaggaaggt gtcccattga gaccgattgt gagcgccata ggatccctac       480
     ttacaggtta gcaaaatacc taaccaagtt aatggcacca atagttggcc actgcgaaca       540
     tcacattaaa aactccgaga tgttcataga gaaactgaaa cagattagag ttggaccaaa       600
     tgatatttta atcagcctgg atgtggtctc actttttacg aaagttcctg tggaggacac       660
     attgaatttg ttggcagagm attttcctcc tgaaacaata aaattgttcc gccttgtaat       720
     gacgaccacc tacttcttgt atggcggcaa attttacgaa atgacagatg gaatggctat       780
     gggttctccg ttgtctcctg ctatggcaaa cttttttatg gaacatttgg aggaacgtgc       840
     tttaaattca gctcctcttc gtccatctgt gtttttcgtt atgttgacga cattttcatg       900
     gtgtggccac atggcatgga agctctcggc aacttcgtgg aacacatgaa cagtatccac       960
     tctaacattc agtttaccat cgagacggag gaggaaggaa ggctgccttt tctggatgtt      1020
     ttaatacaac gtaaatcaga tgggcgtctc ggccactctg tgtaccgtaa accaacgcac      1080
     ackgatttgt atctcagcgc acagagtttc catcacccag ttcagaagag agccgttctg      1140
     aacacgttga tatacagagc aaaaacagtt tctgacgagg atcacttgga atccgaaatt      1200
     caccatctta agtatgtgtt ccggaagaac ggctatggtc cacgggatat aaggacagcg      1260
     tttgccaaga agaggaaaag tagaaatgtt gaagattcac gtgatgagca accgacggct      1320
     ttccttcctt tctgtggtgc tacttctagc aaaataggaa gagtcctggg gaggcatggt      1380
     attaaatcga tcttccgacc tcctaggaaa atcaaggaga tgctacgccc tgtaaaggac      1440
     agcctcggcc tcaggatccc tggtatttac aatataccat gtgagtgcgg aagcaactac      1500
     atcggtcagt ccatccgtac cgtcgccgac cgttgcacag aacaccaaag gcacattaga      1560
     aacagagaac tggagaaatc ggcagtcgct gagcacagcc tcacaaacaa acacaaaatc      1620
     ttgttcgatg aaacaacaat tttgtcccag gcctgcacat actgggattc tgtaattaaa      1680
     gaggctgtag aaataagaat gtgtgaggac aattttaacc gtgacagcag gtacaatctt      1740
     agcggtgcat ggaaacgagc gctcgataca gagaagcggc aaagacatcc cgtacagcgt      1800
     ctcgatacta cgggagcggt ggcgccacca gcgcagacgt cgacaccatc tgcgacggca      1860
     ttacgtagcc gccagccaat cagaagctga ccaatcacaa gccatctagt tgctatttaa      1920
     gaccaccgca gcactacaca accagtcagt tgctcctgac aaaggcgatg gaggtaatcg      1980
     ccaaaagctt gaagttttat caagatttga cgcggcaaga agtccgagaa tgttttatac      2040
     aggagtgccg tcgcgaaaga cttcgtctca                                       2070
//
ID   Penelope-37B_LMi repbase;    DNA;    INV; 1241 BP.
XX
AC   .
XX
DT   18-JUL-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-37B_LMi.
XX
NM   Penelope-37B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1241
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3389-3389 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1241 BP; 353 A; 290 C; 293 G; 304 T; 1 other;
     ccccctggcc cttggtgcaa cttttatgag gttttgaaga gaaagcactg acatcacagt        60
     ccttaaacca actgcctttg agtatgtgga cgcattttca tagtgtggcc tcaggagaat       120
     taagttttac atcattttaa cccatgcatg agaacattca gttcaccatt gagttagaga       180
     aagatggttg tctcccattc cttgatgtct tggttagacg taagagtgac ggctctctag       240
     gacactcagt ttaagcccac tcatacagat ttgtatttga atgctgcaag ttgccaccat       300
     ccttcgcaaa ctatgagtgt cctaaagact tgtcatagag cccacacgtg tctgatgcag       360
     atagtttacc tgagagcttg accctaaggc tgtattcaga gagatggata cctggcaaat       420
     taacaaagca ttttcaatta aaaccaagac ccagaatgtg gagaatgagg aggcacgccg       480
     gcaaagtcag tagcatttct ccccttcgtt ggaaatcttt cttttaaaat agtaaggatt       540
     ctkcaaaatt accaagtgag agcgattttc cgcccaccag ctaaaatttc agacctgctg       600
     ggatcagtga aagataattt gttattgcgg aaggcgggaa tatacaaaat accgtgtcag       660
     tgcggtatgg cttacattgg acaaacaaca cgcacagtgg aagaacgctg cacagaacat       720
     aagcgttgca cccgcctttt gcaacccagc aaatctgcag tggcggaaca ttgcatctcc       780
     actggacata tgatggagta cgacaaaaca tcaattctag ccacagctac atctttctgg       840
     gactccatca taaaagaatc ggtggaaata tgcgtggcag aaaatttgat aaaccgagac       900
     agcggctatc agcttgacaa tgcttggaat cccgtcatct cgaagatttg ctccagacaa       960
     agacgccaga ggactccgat ggacgcggca agcggcagcg ccgaagacat gtagttctgc      1020
     acgtctacca gcgagggcgc cgctgcaggg cagtgtgttc catctgccac tgcaattttc      1080
     gcgcatgcgc agattactat tagagcgcta tatagggcgg aacggagaac gtcttcctca      1140
     gtccccgagg ctcacctgag gatggctggc aggtgtccag ctgaaatatc gtgtactgga      1200
     tacgacgacg accggctgca agcccgaaat ctgtttgaat a                          1241
//
ID   Penelope-37_LMi repbase;    DNA;    INV; 2376 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-37_LMi.
XX
NM   Penelope-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2376
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3444-3444 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(417..680,605..1741,1720..1983)
FT                 /product="Penelope-37_LMi_1p"
FT                 /translation="KLLLNAVIQLLRKGLHYEIPRESGIVVLKADKGNSTV
FT                 LLPRRLYLEKMYGLLSDTMYRKIEHDPTARVQRKTCTLLNSSSLAPETSSG
FT                 PYSTCATEDVHTFEFFLVSSRDIKRLRPHGSVPPRLYGLPKVHKEGIPLRP
FT                 IVSNIDAPTYDLAKHLASLLRPLVGKCTHHIRNSADFINRLGALHLSSSDL
FT                 LVSFDVVSLFTKVPLADSLALIGKRFQSDITGLFRHALSSTYFMFNQEYFE
FT                 QTDGVAMGSPLSPLVANFFMEDFEERALESAVCKPTVFWRYVDDTFIVWPH
FT                 GEDKLMEFLHHLNSIHENIRFTXELEKDGCLPFLDVLVKRKSDGSVGHSVY
FT                 RKPTHTDSYLHSSSCHHPSQTMSVLKTLVHRAHTVSDAESLPKELAHLRTV
FT                 FRDNGYSTRQINRAFSPKTRNREVDKEENAPAKSLAFLPFVGNVSFKIGRI
FT                 LNNYQVKVIFRPPSKISTCWDQDFDLLGSVKDDLLLRKAGIYKIPCECGMA
FT                 YIGQTTRTWKNVAQNINVALAFCNPASLQLRSIVFPTDIQWSMIKHQFWPQ
FT                 QHPSGTPL"
XX
SQ   Sequence 2376 BP; 653 A; 523 C; 562 G; 637 T; 1 other;
     ttaagacggc cactgcacgg aagattatgg agaagggagc catgctattg tgagagagaa        60
     ttagttatac aggcaaaggt tggatacatt tcaggaactg ttcccttgac atcgaagatt       120
     gcagcctttc cccccgggac tgggttgatg gagttacttc gccaactttg attgggaatt       180
     ttggatgcaa gttcgggatg tcaaaattga tcgcatggtg ccacaacaag cttcaacaca       240
     ggaagttact gtacaacgtt ccattttaaa tttcggagag aatttggacg ttgcaactgt       300
     ctgttttggg caaaggactg aagttttgta cctacaccca gtgactgggt tgaagaagct       360
     gtacgacatt cctatggcac tgctgaagaa atgggaaact tgccgtgttc tcttgaaagc       420
     tcctcctcaa cgcagtaata caacttctga ggaaagggct gcactacgaa atcccgagag       480
     aatccggcat agtggtgttg aaggctgata aaggtaattc aactgttttg ttacctcgta       540
     ggctttattt ggagaagatg tatggtctgc ttagtgatac tatgtacagg aagattgaac       600
     atgaccctac agcacgtgtg caacggaaga cgtgcacact tttgaattct tcctcgttag       660
     ctccagagac atcaagcggt taagaccaca tggcagcgta ccaccgagac tgtatggtct       720
     gcctaaagtg cacaaagaag gtattccttt acggcctata gtgagtaata ttgacgcccc       780
     cacatatgat ttagcaaaac atcttgcttc cttactgaga cctttggttg gcaaatgtac       840
     acatcatata cggaactctg cagattttat caacagactg ggggctcttc acctgagtag       900
     ttcggatctt ttagtgagtt ttgacgtagt atctcttttt acaaaggtac ctcttgctga       960
     ttccttggcg ctaattggta aacggtttca gtcggacatc actggtttgt ttcgacacgc      1020
     cctttcttca acctatttta tgtttaacca agaatatttt gaacaaactg acggtgtcgc      1080
     catgggcagc cccttgtctc ctctggtggc caactttttt atggaggact ttgaagaaag      1140
     agcacttgaa tcagcggttt gtaaaccaac tgtattttgg agatacgtcg acgacacttt      1200
     catagtgtgg ccccacggag aagataagtt aatggagttt ctgcatcatc ttaactccat      1260
     tcatgagaac attcgattta ctawggaatt agagaaagat ggttgccttc catttctgga      1320
     tgttttggtt aaacggaaga gtgatggctc tgtaggacat tctgtttatc gtaagcccac      1380
     gcacactgat tcgtatttgc attcctcaag ttgccatcac ccatcccaaa caatgagtgt      1440
     gcttaaaacc cttgtacaca gggcccatac cgtgtcggat gcagaaagtc taccaaaaga      1500
     acttgcacat ttaaggacgg tattcagaga caatggatac tcgactcggc aaattaacag      1560
     ggccttctca cctaaaacca ggaaccggga agtggataaa gaggaaaacg cgccagctaa      1620
     gtcgctagct ttccttccct tcgttggaaa tgtctccttc aaaataggaa gaatacttaa      1680
     taattaccag gtgaaagtga ttttccgtcc accatctaag atttcgactt gctgggatca      1740
     gtaaaggatg atttgttact gcggaaggcg ggaatttata aaataccttg cgagtgtggt      1800
     atggcctata taggacagac aacacgcacg tggaagaacg ttgcacagaa catcaacgtt      1860
     gcactcgcct tctgcaaccc agcaagtctg cagttgcgga gcattgtatt tccaacggac      1920
     atacaatgga gtatgataaa acatcaattt tggccacaac aacatccttc tgggactcca      1980
     ttataaaaga atccgttgaa atacgcattg cggaaaatct gatgaaccgt gacagcggct      2040
     accagctgaa taatgcgtgg aatcccgtca tctccgagat ttgttctaga cgaagacgcc      2100
     agaagactcc gataactgcg gcagcggcac tatcgaagac agctgatcct tgcagttcca      2160
     ccagcgaggg cgctgccgcc gggcggtgtg gtccttctgt caccgtgtct tcgacgcatg      2220
     cgcggtaata ccaccagcgc gctatataag gcggagcgga gagcgtcttc gtcagtcctt      2280
     gttggctcac ctgaagatga ctggcaggtg tccagttgaa atatcgtgga atgaagttta      2340
     cgacgaccgg ctgcaaaccc gaaatctttt tgaaca                                2376
//
ID   Penelope-38_LMi repbase;    DNA;    INV; 2280 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-38_LMi.
XX
NM   Penelope-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2280
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3445-3445 (2014).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(159..1409,1183..1866)
FT                 /product="Penelope-38_LMi_1p"
FT                 /translation="EFAGRRKLGVLPQTRGTPLSFLKTDYDQKICQLLEDP
FT                 AYXLLENDPTDKVDRKTRSLLKETGWPEKVVKQLRAKAPVPPRLYGLPKVH
FT                 KQDVPLRPIVSNIGAATYATASHLKKMLAPYVGKCVHHIRNSTDFVERLKN
FT                 LRISNTDIMVSFDVVSLFTRVPLQDTLDLISERFDGTVLDLFKHILTSTYF
FT                 LCGGQFYEQTEGVAMGSPLSPVVANLFMEKFEEEALTTAAYQPTCFFRYVD
FT                 DTFVIWPHGQNRLDEFLDHLNSRHPNIKFTMELENEGQLPFLDVLVKRKPD
FT                 GTLGHSVYRKPTHTDLYLQADSCHHPAQKNGVLRTLVHRAKTLSDSDNLAA
FT                 ELDHLQRVFTNNGYSSRDIRKALHPTRRPDTTGEERRRDREGSLPTICRAY
FT                 ICQDQQNLEETQNQKCFLPTKQDQQSWIISSECSQTTATRAETSARRYTPP
FT                 DAQIQQEKKEEETGKVAFLPYAGPISAKISRILRKHKIKSVFCPPNKIRAL
FT                 IGGVKDDLGLRKPGIYQIPCECGMSYIGQTTRTVXIRCKEHQRHTRLRQAT
FT                 KSAIAEHCLELDHTMDYDKTRILAQTPRFWDSIITESIEIKMGEDLINREA
FT                 GYQLSTAWNPALELLQKQRKKGHPPVELQTTTRDSSSGWPPCAPTTA"
XX
SQ   Sequence 2280 BP; 681 A; 584 C; 581 G; 430 T; 4 other;
     cactcctagg gagctaccag tttccagttt catcagctct gtggagcaag tagtcaacac        60
     tctaccatca gtgttgcaga agagatcgga gagagacgca gggcgctacc agagcaggcc       120
     ccaaaacaaa catctcaaga gacgagaggt ggcgctagga gtttgcggga agacgaaaac       180
     ttggtgtgtt accgcagaca aggggaactc cactgtcatt tctgaagact gactatgacc       240
     agaagatctg tcaacttttg gaggaccctg cttacmgtct gctagagaat gaccccactg       300
     ataaggtgga caggaaaacc aggtctcttc ttaaggaaac tgggtggcct gagaaagtcg       360
     tcaaacaact gagagctaag gcaccagtac cacccagact atatggatta ccaaaggtcc       420
     ataaacagga tgtaccactt cggccaatcg taagcaatat tggtgcagcc acctacgcta       480
     cagcctcaca cctaaagaag atgttagcac catatgtggg aaagtgcgtc catcacatcc       540
     gcaattcaac tgactttgtg gaacgtctca agaacctacg aatctcgaac acagacatca       600
     tggtcagctt tgatgttgtg tctctattca cgagagtacc actccaggac acactcgatt       660
     taatcagtga gagatttgac ggaactgtgc tggacctatt caagcacatt ctgacatcga       720
     cttacttcct ttgtggaggc caattctatg aacagactga aggagtggcg atgggtagcc       780
     ccttatcccc agtggtggct aatctgttca tggagaaatt cgaggaagag gcactgacaa       840
     ctgctgccta ccagccaacg tgtttcttca gatatgtgga tgacacattt gtcatttggc       900
     cacatggcca gaataggctg gatgagttcc tggaccatct gaactcaaga caccccaaca       960
     ttaagttcac catggaacta gagaacgaag gtcagcttcc attcctggac gtcctggtga      1020
     agaggaagcc agacggcact ttaggccaca gtgtgtacag gaaaccgaca cacactgact      1080
     tgtatctaca ggccgacagc tgccatcacc cagctcagaa gaatggggta ctgagaacat      1140
     tggtacaccg agcsaaaaca ctctccgact cagacaacct agcagcagag ctggatcatc      1200
     tccagcgagt gttcacaaac aacggctact cgagcagaga catccgcaag gcgctacacc      1260
     ccaccagacg cccagataca acaggagaag aaagaagaag agaccgggaa ggtagccttc      1320
     ctaccatatg cagggcctat atctgccaag atcagcagaa tcttgaggaa acacaaaatc      1380
     aaaagtgttt tctgcccacc aaacaagatt agggcactca tcgggggcgt caaggatgat      1440
     ctgggactac gaaaaccggg tatctaccag ataccatgtg aatgtggtat gtcttacatc      1500
     ggtcaaacca ccagaaccgt tgamataaga tgtaaggaac atcaaagaca taccagacta      1560
     cgacaggcca ctaagtctgc tatagcagaa cattgtctgg agttggacca taccatggat      1620
     tacgacaaaa ccaggatctt ggctcaaacc cccaggttct gggatagcat cataactgag      1680
     tcaattgaaa tcaagatggg ggaggacctg ataaaccggg aagcaggata tcaactcagt      1740
     actgcatgga atccggctct ggaactgcta cagaagcaac ggaagaaagg ccaccctcca      1800
     gtagagctac agacgacaac cagggacagc agctccggat ggccaccatg cgccccaaca      1860
     acagcctgat gcgacgggta gcatacctcg caggcgcaca ccgaattcga agccaggaga      1920
     gtagcgtggc cacgataaca ttctgtagtg gtcaccaama gcagaggaga tcgccatgaa      1980
     agtgctagga acgcgcatgg cgggcgcgga ccacctatgg aacgcctggg acggccgcca      2040
     ctagagagcc gcagggcgcg gaccgacgag ggatcaccag cgtcagatac caccgccaga      2100
     ctggagcaca ttgggcgcgg accgcataga aagcaccaga cgccgcctag gcataaatat      2160
     gggacgcggt cggcttgtcg atcagtctca gggaacacct gatgaagacg ccgagttacg      2220
     gtgtcgaaat atcgtgtttg gaagacgcgg atcaccggca gtacacccga ttccacgaga      2280
//
ID   Penelope-39_LMi repbase;    DNA;    INV; 2221 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-39_LMi.
XX
NM   Penelope-39_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2221
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3446-3446 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(171..971,842..1972)
FT                 /product="Penelope-39_LMi_1p"
FT                 /translation="MFPSRNHLCGEQAVSKFPEDQAEVIRHEVSHTLRRAP
FT                 PPRSNISSHERAAIRSLREDQDLIILPADKGNSTVVLSRDDYLRKMDLLLE
FT                 DTAYRRLQNDPTERIKRKTLSLLKKSSLPEDELKKLRPGAAVPPRLYGLPK
FT                 VHKTGIPLRPIVSNLGAPTYNLAKYLTSILSPHVGKCEHHISNSTVFIQRL
FT                 KSLSLSPSDLLVSFDVVSLFTRVPLEESLQLIGEILDEETTELCRHVLTST
FT                 YFLFNDQYFNILNNLTEWLWGAHYPPNSGRGDNGALPPCADVNVLFIQRPI
FT                 FQYFEQSDGVAMGSPLSPIVANLFMEDFEDTALKTSFLKPTCFWRYVDDTF
FT                 MVWPHGRDALNRFLDHFNCLHPSIKFTMEVERDGKLPFLDVMVYRKGDGTL
FT                 GHSVYRKPTHTDRYLHATSCHPPYQRTGVLRTLTKRAFAISDAESLTKEMD
FT                 HLRTVFKKNGYTDQQICRAFQFGPSREPQEETCKSLAFLPFAGSISSKIGR
FT                 ILKRHDIQCIFRPPAKVRALLGSVKDDLGLRKPGVYKIPCHCGKVYIGQTI
FT                 RTIQDRCTEHHRHTRLLQPEKSAVAEHCLTEGHKMKYDETQMVASASRYWD
FT                 CILKESIAIRLSDNIINRDKGFPLSKMWNPVLFDIKKQRSLFRPAE"
XX
SQ   Sequence 2221 BP; 605 A; 520 C; 528 G; 568 T; 0 other;
     aggcccacag aatccgccac taggcaatct tccatttgac cggctttgtt cagctacgat        60
     tggatgacga aacccaccga cggaatgtga ttaacctcac agataaagaa ttggatgacg       120
     ccacgctatc agtgttggaa aagggcctta attttgctcc acaccgagga atgttcccat       180
     cacggaatca tttgtgcggt gagcaagcgg tatcaaagtt ccctgaagac caggcagaag       240
     taataagaca tgaggtctca catacgttgc gtcgggcgcc gcctccacgg agtaacatct       300
     cctcacatga aagagctgcc atccggtcct taagagaaga tcaggattta ataattttac       360
     cagcagacaa aggtaattcc acggtggtcc tgtcacgtga tgattacctg cggaaaatgg       420
     atcttttact tgaggacaca gcataccgta ggttgcagaa tgacccaacc gagcggatca       480
     aaagaaagac gctttcactg ctgaagaaga gttccttacc tgaggacgag ctcaaaaaac       540
     ttcgtcctgg tgccgccgtt ccacctagat tgtacggtct acctaaggta cacaagactg       600
     gaatcccact gagaccgatt gtgagtaatt tgggcgctcc cacttacaac ctggccaagt       660
     atctgacgtc gattctcagc cctcacgtcg gtaaatgtga acatcatatt tccaattcta       720
     cagtttttat tcagcggctg aagtctttga gtctgagtcc ctctgatttg ctggttagct       780
     tcgatgtggt gtcgcttttt acccgggttc ctctggaaga atccttgcaa ttaattggtg       840
     aaattctgga cgaggagaca acggagcttt gccgccatgt gctgacgtca acgtactttt       900
     tattcaacga ccaatatttc aatattttga acaatctgac ggagtggcta tggggagccc       960
     attatccccc atagtcgcca atttatttat ggaagatttt gaggacacgg cgctgaaaac      1020
     gtcgttttta aaacctacat gtttctggag gtacgttgac gatactttca tggtatggcc      1080
     acatgggaga gatgctctga accgttttct ggaccatttt aattgcctcc atcccagcat      1140
     taagttcact atggaggtgg agagagatgg aaagcttcca tttttagatg tcatggtgta      1200
     cagaaagggt gacggaacat tgggacatag tgtttacaga aagcccacgc acacggaccg      1260
     ctacttgcat gcaacaagtt gtcatccacc ttaccagcgc actggtgtcc tgcgtacgct      1320
     gacaaaaaga gcttttgcca tttcagacgc tgaaagtctg actaaagaga tggaccatct      1380
     gagaacggta ttcaagaaga atggttacac tgaccaacag atctgccgtg ctttccagtt      1440
     tggaccgtcg cgggaaccac aagaagaaac ttgcaagtcg ctggctttcc taccgtttgc      1500
     tggaagcatt tcttcaaaaa taggaagaat tttgaaaaga catgacatcc aatgtatttt      1560
     tcgtccacct gccaaggtta gagcgctcct gggctcagta aaggatgact taggattgag      1620
     gaaacccggc gtatacaaaa ttccttgtca ctgtgggaaa gtttacatcg gtcagacaat      1680
     ccgaacaatt caagatcgat gtactgaaca ccatcgacac acaagattgc ttcagccaga      1740
     gaaatctgcg gtagctgagc actgtcttac tgagggacat aaaatgaagt atgacgagac      1800
     acaaatggtt gcctctgcgt ctcgctattg ggactgcatt ttaaaagaat cgatcgcaat      1860
     tcgtctttct gacaatatta taaacagaga caagggtttt cccttgagta aaatgtggaa      1920
     ccctgtattg tttgacataa aaaaacaacg gtctctcttt agacctgctg aatagcgatc      1980
     tatcgtttac gccggcttct accactggcg gcgctgaaac gtagagggca gaactgtcca      2040
     ttcttgcgca cgcgccctcg gccttccgcg gcgtatatag gggcctccgc tcgcggcttg      2100
     tactcagtct cggcgagtcg gtgtaccagc actgtcacct gaggatggcg gccaggtgga      2160
     ccgccgaaat attgtgtcca gatgacgtat ttatccggca ggaaacccga gaagaatatt      2220
     a                                                                      2221
//
ID   Penelope-3N1_LMi repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; non-autonomous;
KW   Penelope-3N1_LMi.
XX
NM   Penelope-3N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-249
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3177-3177 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. Hairpin at 5'-end. TSDs are ~10-bp
CC   long.
XX
SQ   Sequence 249 BP; 69 A; 57 C; 55 G; 67 T; 1 other;
     ttgtwtataa aactcttctg ggtgttggac cgcatcgtca aaatatcaaa cacttcaccg        60
     acgtttcggc cactattgca agtggccatc ttctgggtgt tacatttact gtaaacgtaa       120
     cacccagaag atggccactt gcaatagtgg ccgaaacgtc ggtgaagtgt ttgatatttt       180
     gacgatgcgg tccaacaccc agaagagttt tataaacaat gacaacggcc gcggaagcct       240
     tcgtttaca                                                               249
//
ID   Penelope-3_AAe repbase;    DNA;    INV; 3222 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3222
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1437-1437 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Sequences 1-1111 and 2112-3222 are
CC   terminal inverted repeats. TSDs are 3 bp; usually TAA.
XX
FH   Key           Location/Qualifiers
FT   CDS           1161..259
FT                 /product="Penelope-3_AAe_2p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="VCRSLGTRRPYNRRGTQFLDLLVTREESSTYNFEIYR
FT                 KPTNTQRVIPYTSNHSFQHKMAAFHHMIHRMQTLPLSEHGKTKELEYIYET
FT                 ARINGYKERTIKAIIDKKERQRIRNALTTLTPITEPMKRVSIPYDVHISKQ
FT                 LRPKLRNFGIDLVFSSRDNQLRTSLGSTKDPVNTLNKAGVYKISCSHCSKV
FT                 YVGQTKRSLEVRFKEHLAEIGKAQKTIDKGMTYDFKSKVAEHIFSEGHTIT
FT                 TADIKILRNVSSPWKLDVAESLEICKQVPTTLLNRDNGNGNTWLFNLVPTN
FT                 RSRDVPFSI"
FT   CDS           1282..2964
FT                 /product="Penelope-3_AAe_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="RQRSRHHGQDGLRRTNGEKDQRRPLPTFESGSTTRTH
FT                 QLTDKTLKDCKAIIGEARLKESNPILPRIKGLPKIHKPGKEMREIISADGS
FT                 PTHKLAKWLVKEFQSMPNPFPTRSVKNTQEFSQKLLESGHIEDDEMMVSFD
FT                 VAALFPSVPVKDSLNLLEDWLLPQRTDAAWKGKVRTYMRLARLCMDENYFQ
FT                 FRGNFYKQTKGAPMGNPLSPFLCELFMANFEENLKKQGVLPDKWWRYVDDI
FT                 FSVIKRNDLAKILDTINSVHKDIKFTHEEEKDGKLSFLDLLVTKEESSTYN
FT                 FEIYRKPTNTQRVIPYTSNHSFQHKMAAFHHMIHRMQTLPLSEHGKTKELE
FT                 YIYETARINGYKERTIKAIIDKKERQRIRNALTTLTPITEPMKRVSIPYDV
FT                 HISKQLRPKLRNFGIDLVFSSRDNQLRTSLGSTKDPVNTLNKAGVYKISCS
FT                 HCSKVYVGQTKRSLEVRFKEHLAEIGKAQKTIDKGMTYDFKSKVAEHIFSE
FT                 GHTITTADIKILRNVSSPWKLDVAESLEICKQVPTTLLNRDNGNGNTWLFN
FT                 LVPTNRSRDVPFSI"
XX
SQ   Sequence 3222 BP; 970 A; 698 C; 704 G; 850 T; 0 other;
     gtagatgaaa aaaccgaatt tagtactata ccatttaatt ccactagagt ttgtatcctt        60
     tgacagatac gcgtatttcg acctcaactg taaggccgtc ttcagtgtcg tgtactagac       120
     tcgacttgaa gaaaaccatc gtatgcacac attatatatt aacactaggt ataaacgtat       180
     ttccctaccc attattattt tttaacttaa aatttatgag ctttaggtac attccatccc       240
     tcttttgttg aaactttaaa tgctgaaagg tacatcacgg gaacgattag taggtaccaa       300
     gttgaatagc catgtattgc cgttgccgtt gtctctgttg agtagcgtcg taggtacctg       360
     tttgcaaatt tccagactct ccgccacatc cagtttccaa ggagaagaaa catttctcaa       420
     aattttgata tcggccgtcg taattgtatg tccttctgaa aagatatgtt ctgccacctt       480
     agatttgaaa tcgtatgtca tccccttgtc tatcgtcttc tgagcttttc ctatttccgc       540
     taagtgttcc ttgaatctaa cctcgagaga ccgctttgtt tgaccaacgt agaccttgct       600
     gcagtgggaa cagctgattt tgtaaacacc agccttgttt agtgtgttta ccggatcctt       660
     ggtagagcct aacgaagttc taagttggtt gtctctgctg gaaaatacca aatcgattcc       720
     gaaattcctt agctttgggc ggagctgttt gctgatgtgt acgtcgtatg ggatggagac       780
     tctcttcatg ggttcggtga taggggttag tgtcgtcaaa gcattccgaa ttcgctgtct       840
     ttcctttttg tcgatgatag cttttatcgt cctttccttg tatccgttga tccttgccgt       900
     ctcgtagata tattccagtt ccttggtctt tccgtgttcg ctgaggggta gagtctgcat       960
     cctgtggatc atgtggtgaa acgctgccat cttatgctgg aacgaatgat tcgatgtgta      1020
     agggatgact cgctgggtgt ttgtaggctt cctgtagatt tcgaagttgt aagttgaact      1080
     ttcttccctg gtgacaagta gatccaaaaa ttgcgttcct ctccgattgt agggccttcg      1140
     tgtaccgaga gaccggcaca ctcaacacta ggtatggacc ttccccacac catcaggaca      1200
     acgaagcaag gcagacaagg acgagacgag gatcgtgaaa gaactcaagg ataaaccagt      1260
     attctacatc aaggcggata aaggcaacgc agtcgtcatc atggacaaga cggattacga      1320
     cgaacaaatg gcgaaaaaga tcaacgaagg cccctaccga catttgagag tggatccact      1380
     acccggactc atcagctcac ggacaaaacc ctgaaggact gcaaggcaat tattggcgag      1440
     gctcgtttga aagagtcaaa ccccattctt ccacggatta aaggactacc gaagattcac      1500
     aaaccaggaa aggaaatgcg agaaatcatc tcggccgacg gatcccccac tcataaactg      1560
     gcgaaatggt tagtcaagga attccagagt atgccgaatc cattccccac taggtcagtt      1620
     aaaaacaccc aggagttctc ccagaaacta ttagagtcag gacacatcga ggatgacgag      1680
     atgatggttt ctttcgacgt agcggctctt ttccccagcg ttccagtaaa ggattcccta      1740
     aatcttctcg aggactggtt attaccccaa aggacggatg cagcatggaa aggaaaggtc      1800
     aggacataca tgaggttggc aagattgtgc atggacgaaa actactttca atttcgagga      1860
     aatttctaca aacagacgaa aggagccccc atgggaaacc ctctctcccc gtttttgtgc      1920
     gaactattca tggcgaattt tgaggaaaat ttaaagaaac aaggagtatt accggataaa      1980
     tggtggagat atgtcgacga cattttcagc gttatcaagc ggaacgatct ggctaaaatt      2040
     ttggatacaa tcaacagcgt acacaaggat atcaagttca cccacgagga ggagaaggat      2100
     ggaaaactat catttttgga tctacttgtc accaaggaag aaagttcaac ttacaatttc      2160
     gaaatctaca ggaagcctac aaacacccag cgagttatcc cttacacatc gaatcattcg      2220
     ttccagcata agatggcagc gtttcaccac atgatccaca ggatgcagac tctacctctc      2280
     agcgaacacg gaaagaccaa ggaactggaa tatatctacg agacggcaag aatcaacgga      2340
     tacaaggaaa ggacgataaa agctatcatc gacaaaaagg aaagacagcg aattcggaat      2400
     gctttgacga cactaacccc tatcaccgaa cccatgaaga gagtctccat cccatacgac      2460
     gtacacatca gcaaacagct ccgcccaaag ctaaggaatt ttggaatcga tttggtattt      2520
     tccagcagag acaaccaact tagaacttcg ttaggctcta ccaaggatcc ggtaaacaca      2580
     ctaaacaagg ctggtgttta caaaatcagc tgttcccact gcagcaaggt ctacgttggt      2640
     caaacaaagc ggtctctcga ggttagattc aaggaacact tagcggaaat aggaaaagct      2700
     cagaagacga tagacaaggg gatgacatac gatttcaaat ctaaggtggc agaacatatc      2760
     ttttcagaag gacatacaat tacgacggcc gatatcaaaa ttttgagaaa tgtttcttct      2820
     ccttggaaac tggatgtggc ggagagtctg gaaatttgca aacaggtacc tacgacgcta      2880
     ctcaacagag acaacggcaa cggcaataca tggctattca acttggtacc tactaatcgt      2940
     tcccgtgatg tacctttcag catttaaagt ttcaacaaaa gagggatgga atgtacctaa      3000
     agctcataaa ttttaagtta aaaaataata atgggtaggg aaatacgttt atacctagtg      3060
     ttaatatata atgtgtgcat acgatggttt tcttcaagtc gagtctagta cacgacactg      3120
     aagacggcct tacagttgag gtcgaaatac gcgtatctgt caaaggatac aaactctagt      3180
     ggaattaaat ggtatagtac taaattcggt tttttcatct ac                         3222
//
ID   Penelope-3_BTa repbase;    DNA;    INV; 3480 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_BTa.
XX
NM   Penelope-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3480
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 966-966 (2018).
XX
DR   [1] (Consensus)
XX
CC   A partial consensus. ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(586..798,802..3306)
FT                 /product="Penelope-3_BTa_1p"
FT                 /translation="MLNFSKILRKAGAYFGWYENFLNLISAFSIFSFDVSL
FT                 FRVLCFTFSFNFLISPLLKLFFSAISKIFSISILSVSFKGMLFVLCSMKLK
FT                 ASKDMEMTGISENKDIFSKIRHSPEHRDHLKSTNEYFRMKIRIHLLAVDIR
FT                 FLNLCKINRVFPNFISNSFKKLTSNKEFLQKKLLQKTIXDKYRERSILENR
FT                 AYSMHLRLGTHFGPELWGSFERHLYTRLSKEKHNKKNTLKKKLAVLCNKIY
FT                 RPKCKQPAPDNVINLSRQKLTGKELEILGQGLKSCYSYPTEITEYIADIDN
FT                 ATRGLNENEKFLIHQKCIPILESIGKQSEKEKRVHNDRRRVISNLKKKGLY
FT                 ITKSDKGNNTVIMEKTDYIQRCNLLLENGNFKKVKKNPLSAYKKELKYNLD
FT                 RVSVIPETEKKWLTNTTAELPYLYAYPKIHKPGKEMRPIVNCREATTYKLA
FT                 KWLIKRFKLFEIFESKSVRNSIELVEKLKNIKLEIDDRIVSFDVKSLYPSI
FT                 PVNLALDTLRNWLHKNGISSVKIKEYAGLVNLCLTQNAFYFNNELYEQLDG
FT                 LMMGNPISSLTAELVMSEFECRAIKEYPKIFQHWSRFVDDVLEILKKHHIN
FT                 EALTILNSYHEKIQFTLEVEEEQKLPFLDLIVHRDKDNLKFGIYRKPTSTE
FT                 TYINNRAFNHRPHKLAAFNFMLHRTNSIPLNETDYKIEIEKILEIAEKNSF
FT                 NKGEIKKLNEKVKQRTLNKETSKLNIEKAEMRFKKFSYHPKYAPAFRRIFE
FT                 KFNIKLSFTNRFNVAQQFSRKIENRRPDNEEKGIYQINCTECNKFYIGQTS
FT                 RSLKVRAQEHKRCVRNRQTEKSAVALHYWEEGHEISFEPKLLRKVTEKNKL
FT                 DIWESIYMYQNKNNIFNTDLTGVNNRLFTTIHSRCDNDGGTGNNPGPKSAD
FT                 WN"
XX
SQ   Sequence 3480 BP; 1236 A; 628 C; 635 G; 980 T; 1 other;
     tctaagattc taaaaaattt aaaaaacttt taagacaatt tttgaaccac tcacttgcat        60
     aaaatcttct tttcacggaa gcggacgcgt ttcggaggtt acctgccctc catcatcggc       120
     gcgactggtc aattccaatc agctgatttc ggtcccggat tatttcccgt ccctccatcg       180
     ttgtcacatc tcgagtgtat tgttgtaaac agtctgttat ttactcccgt tagatccgta       240
     ttaaaaatgt tgttcttatt ttggtacatg taaatacttt cccatatgtc tagtttattt       300
     ttctcagtga cttttcttag cagtttcggt tcaaacgata tttcgtgtcc ttcttcccag       360
     tagtgtagag ctactgctga tttctctgtt tgtctatttc taacacatct tttatgttct       420
     tgggctctta ctttcagtga acggctggtc tgtcctatgt agaatttatt gcattctgta       480
     cagttaattt ggtaaatacc tttctcctcg ttgtcaggtc ttctgttttc aatcttcctg       540
     ctaaattgtt gggcaacatt gaacctattg gtgaagctta gttttatgtt gaacttctca       600
     aaaatcctac gaaaagctgg ggcatatttc ggatggtatg agaatttttt aaacctcatc       660
     tcggctttct ctatatttag ctttgatgtt tccttattta gggttctctg cttcactttt       720
     tcattcaatt tcttgatttc tcctttgtta aaactattct tttctgctat ctctaaaatt       780
     ttctctattt ctattttgta atcagtttcg ttcaaaggaa tgctgtttgt tctgtgtagc       840
     atgaagttga aagcctcaaa ggatatggag atgactggta tttctgaaaa caaagacata       900
     ttctcgaaga tacgacactc cccggagcac agagatcatc ttaagtcaac gaatgaatat       960
     tttagaatga agatccgcat ccacttgtta gcagttgaca tccgtttctt gaatttatgt      1020
     aagataaaca gagtttttcc caattttata tcaaatagtt ttaagaaatt gacgagcaat      1080
     aaagaatttc tacagaagaa attattgcaa aaaacaatcm gtgacaaata cagagaacga      1140
     agtattcttg aaaatcgggc ctacagcatg catttaagat tgggaaccca ctttggacca      1200
     gaactctggg gttcttttga aaggcattta tacacccgat taagtaaaga aaagcacaac      1260
     aagaagaata cattaaaaaa gaagctagcg gttttatgta ataagatata tcgcccgaaa      1320
     tgtaaacaac cagctccaga caacgtcatt aacctttcac gtcaaaaatt aacagggaaa      1380
     gaattagaaa ttttaggaca agggctaaaa agttgttaca gctaccccac agaaataact      1440
     gaatatatag ctgacattga caacgcaact agaggtctta atgaaaatga aaagttctta      1500
     atacaccaga aatgtatacc catcctagag agcataggca aacagtcaga aaaagagaaa      1560
     agagttcata acgacaggag gcgagtgatt agtaacctga agaagaaagg cttgtatatc      1620
     accaaatcag ataaggggaa caacaccgtg ataatggaga agactgatta catacagcgc      1680
     tgcaacttac tactagaaaa tggtaatttt aagaaagtaa agaagaatcc actgagcgct      1740
     tataagaagg aactcaagta taacctggac agagtaagtg taatccctga aactgagaag      1800
     aaatggttaa ccaacacaac agctgagcta ccttatttat atgcttaccc gaaaatccat      1860
     aaaccgggaa aagagatgag accaattgta aattgtagag aagccaccac atacaaattg      1920
     gcaaaatggt taatcaagag attcaagttg tttgaaattt ttgaatcgaa gagtgtaagg      1980
     aattcgattg agttagtaga aaaacttaag aatataaaac tggaaataga tgacaggatt      2040
     gtttcctttg acgtaaaatc tttataccct agcataccag taaacttggc actagacacc      2100
     ttaagaaatt ggctacacaa aaatggaata agctcggtga aaattaaaga atatgcggga      2160
     ctagtaaatt tatgtctaac tcaaaacgca ttttacttca acaatgaact ttacgaacaa      2220
     ttagacggcc taatgatggg caacccgatc tcctcgttga cagctgagct ggtcatgagt      2280
     gaatttgaat gcagagctat taaagaatac ccgaaaattt tccaacattg gtctcggttc      2340
     gtagatgatg tcttagagat actaaaaaaa caccatatta acgaagccct tacaattctt      2400
     aactcatacc acgagaaaat tcaattcaca cttgaagtag aagaagaaca aaaacttccc      2460
     tttttagacc taatcgtaca tagggacaaa gataatctca aattcggaat atatcggaaa      2520
     cctacgagca cggaaacata tatcaacaac agagcgttca accacagacc acacaaactc      2580
     gcagctttca acttcatgct acacagaaca aacagcattc ctttgaacga aactgattac      2640
     aaaatagaaa tagagaaaat tttagagata gcagaaaaga atagttttaa caaaggagaa      2700
     atcaagaaat tgaatgaaaa agtgaagcag agaaccctaa ataaggaaac atcaaagcta      2760
     aatatagaga aagccgagat gaggtttaag aaattctcat accatccgaa atatgcccca      2820
     gcttttcgta ggatttttga gaagttcaac ataaaactaa gcttcaccaa taggttcaat      2880
     gttgcccaac aatttagcag gaagattgaa aacagaagac ctgacaacga ggagaaaggt      2940
     atttaccaaa ttaactgtac agaatgcaat aaattctaca taggacagac cagccgttca      3000
     ctgaaagtaa gagcccaaga acataaaaga tgtgttagaa atagacaaac agagaaatca      3060
     gcagtagctc tacactactg ggaagaagga cacgaaatat cgtttgaacc gaaactgcta      3120
     agaaaagtca ctgagaaaaa taaactagac atatgggaaa gtatttacat gtaccaaaat      3180
     aagaacaaca tttttaatac ggatctaacg ggagtaaata acagactgtt tacaacaata      3240
     cactcgagat gtgacaacga tggagggacg ggaaataatc cgggaccgaa atcagctgat      3300
     tggaattgac cagtcgcgcc gatgatggag ggcaggtaac ctccgaaacg cgtccgcttc      3360
     cgtgaaaaga agattttatg caagtgagtg gttcaaaatt gtcttaaaag ttttttaaat      3420
     tttttagaat cttaaatttt actcttgtgt agtgttttaa actcctaaaa aatcgtttca      3480
//
ID   Penelope-3_CoFl repbase;    DNA;    INV; 3183 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_CoFl.
XX
NM   Penelope-3_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-3183
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2408-2408 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. Both terminal ~80-bp sequences
CC   represent Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           565..2751
FT                 /product="Penelope-3_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MINLFIDYYELKLNSIFREYRYKLEKKFDALFSHEES
FT                 EREGVYDTLPATSVSDPGPVRCPAFVNNEGISEIKENWLCNLSNTPLPDCV
FT                 SSILELGDKFNFVSNVNKCDYFHLFKNVEHSLKYSGEFETVRKELLNIIXN
FT                 NRHNVSTRLSLNDGILQDNLKRTRVFLKNNKHILITKADKGNITVVIDKET
FT                 YINKVEELLSDDKYYLQLENNPLKQLIKDTKNFVSKWDQYGIFDELNKFDK
FT                 DIHKKNLSKCYGLIKIHKKDFPIRIIVSTLNSPTYSFSKFLSDFLIKNIPL
FT                 AKSHVKNSYELKNKLKDIIISPGYTLISLDVVSLFTNTSETLIINAIKHFW
FT                 KFLNGKINVSLNEFCTGVSLILNSTFFHFNNKFYKQVFGSPMGSPCSPVLC
FT                 DLVMRLLEISCLEKLCFDVPLYVRYVDDILICVPTKYINYTKNIFNSYCPE
FT                 LQFTVETCNNNSISFLDLEIIIQQNNTVLTNWYQKPTHSGRYLNFLSHHPI
FT                 QHKIGIIYTLVDFSIKLADTQFHNDNLKLINKFLLANNYPQRFIDKFLNKR
FT                 INTLKNMNMIDNCNRNNNNYKLILSLPYIPHLHGPIKYFCKKLHIGLVYSL
FT                 NNKLNSIFSLGKDVTEPLDKNNVVYHIPCANCNCCYVGQTSRALKLRMAEH
FT                 KRDIEKKKDTSVLSQHSIEFTHNFNFDKIKILDTEQNYKKRLFSEMLNIHY
FT                 FNNNINRQQDTEKLKNCYKSLVKSIKKGD"
XX
SQ   Sequence 3183 BP; 1145 A; 494 C; 462 G; 1080 T; 2 other;
     ttgtttttta ataaatacaa aatttgacag taccaccatt ggacgttatt ttaattatta        60
     accaactgtc attggacgtc ttatattatt atttgtggac gctggtggaa gctgtacgtc       120
     ctttatattt acatckgcat ctacactgtg gagaacacca gattgcaaca actactaacc       180
     atccttacca gtaggaagtt tgaatcgctt tcaagggtgc ttgactccat acgtgcatgc       240
     ttcggtagaa atgtaagttt tagtttttat aagcttagtt gtgttcagaa ggaattgaag       300
     agcggtgaat tgaagtgcaa atttttaatt aaatgtagga cttatgacgt ttttccaaga       360
     catatcacac aatgtaccaa caagcttaat tatgttacct tttttagttt ccgatcgaac       420
     ataaaacata aattagccat ttctaaatta cataaattaa ttttaaataa tgaaatttcg       480
     gactcgtaca caaaaactaa ttttttaaga aataaaattg aattaattaa agaaaaaata       540
     ttaagtcatg gctgtgaatc ttatatgata aatttattta ttgattatta cgaattaaaa       600
     ttgaatagca tttttcgcga atatcgttat aagttagaaa aaaagttcga tgcccttttc       660
     tcacatgaag aatccgagcg cgaaggtgta tacgatacac ttccagctac aagtgtcagt       720
     gaccctggcc cggttcggtg ccctgcattt gtcaacaatg aaggcataag tgaaataaaa       780
     gaaaactggc tatgtaacct ttctaacaca ccgctaccgg attgtgtctc aagcatatta       840
     gagttgggcg ataaatttaa ttttgtttct aatgttaata aatgtgatta ttttcatctt       900
     tttaagaatg ttgaacattc attaaaatat tctggagaat ttgagactgt cagaaaagaa       960
     ctacttaaca ttattgrtaa caatagacat aatgtatcta ctcgtctttc tttaaatgat      1020
     ggaattctcc aagacaattt aaagcgaaca cgagtctttc ttaaaaataa taaacacatt      1080
     ttaattacta aagcagacaa aggtaatatc actgttgtca ttgacaaaga aacttacatt      1140
     aataaagtag aagaattatt aagtgatgat aaatattatt tacagctaga aaataatcct      1200
     ttaaagcaat taattaaaga tacaaaaaat tttgtaagca agtgggatca atacggtatt      1260
     tttgatgaat taaataagtt tgataaagat attcataaaa aaaacttatc taaatgctac      1320
     ggactaataa aaatacacaa aaaagacttt cctatccgta tcattgtctc gacactgaat      1380
     tcacctactt atagtttttc aaaatttctt tctgattttt tgattaagaa tattccgctg      1440
     gcaaaatcac acgtaaaaaa tagttatgag ttaaaaaata aattaaaaga tattatcatt      1500
     tcacctggtt acactcttat tagtctagat gtagttagtt tatttactaa tactagtgaa      1560
     accttaatca taaatgcaat aaaacatttt tggaaattct tgaatggtaa aatcaatgtt      1620
     tctctcaatg aattttgcac aggtgtatct ttgattttga attcaacttt tttccatttc      1680
     aacaacaaat tttataaaca agtttttggc tctccaatgg gcagtccctg tagtccagta      1740
     ctgtgtgatc ttgtaatgcg tttacttgaa atttcatgct tagagaagtt atgttttgat      1800
     gttccactgt atgtgcggta tgtggatgat atcctcatat gtgtgcctac taaatatatt      1860
     aactatacta aaaacatttt taatagctat tgtccggaat tacaattcac tgttgagaca      1920
     tgcaacaaca acagcattag tttcttagat ttagaaatta ttattcaaca aaataacaca      1980
     gtactaacta attggtacca aaaacccaca cattcaggcc gatacttgaa ttttctctcc      2040
     caccatccaa tacaacataa aataggtatc atttacacat tagtagactt ttccattaaa      2100
     ttagcagaca ctcaatttca taacgataat ttaaaattaa tcaataaatt tttactagct      2160
     aacaactatc ctcaaagatt tattgataaa tttttaaaca aaagaataaa taccttaaaa      2220
     aacatgaata tgattgacaa ttgcaataga aacaataata attataaact aatcttatca      2280
     ttaccgtata ttccccactt gcacggtcct attaaatatt tttgtaagaa gcttcacatt      2340
     ggtcttgtat acagtttaaa caataaattg aattcgatct tttcacttgg aaaagatgta      2400
     accgagccac tcgataaaaa taatgtcgtt taccacatac catgtgcgaa ttgcaactgc      2460
     tgttatgtcg gtcaaacatc gagagcttta aaattaagaa tggcagaaca taaaagagac      2520
     atagagaaaa aaaaggatac atctgtacta tcacaacata gcattgaatt tacacacaac      2580
     tttaattttg ataaaataaa aattttagac acagaacaaa attacaaaaa gcgccttttt      2640
     tccgaaatgt taaatataca ttatttcaat aataatatta atagacaaca agatacagaa      2700
     aaattgaaaa attgttataa gtctctcgtt aagtcaatta agaaaggaga ctaactttat      2760
     gtacatgatt tgagggcccc tttcattcat agtattagga aaacatgatc tgtttacgtg      2820
     cgtctcacaa ggaactgctt gcgattctta tttgattgta ttatgtgcgt gtactgtgtc      2880
     atttgtgtat gtgcagggta taaaagcaac taaacttgaa actctgacta cattacgatt      2940
     ttacatcccc ttcgtaagag tcagaggtat gttatacact ttacttaatt tgcgtttatt      3000
     gtatttacca aaatttgtat tgtaaagaat ttttattact catagatttt tgtacctgat      3060
     gagggccggg acattgtcca aacggccgaa acgtcgtttt gttttttaat aaatacaaaa      3120
     tttgacagta ccaccattgg acgttatttt aattattaac caactgtcat tggacgttta      3180
     ttt                                                                    3183
//
ID   Penelope-3_CQ repbase;    DNA;    INV; 4117 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4117
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the southern house mosquito.";
RL   Repbase Reports 11(1), 602-602 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 22 sequences with >89%
CC   identity. Sequeces 23-1685 and 2435-4117 are terminal inverted
CC   repeats seen in several copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           1676..3529
FT                 /product="Penelope-3_CQ_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="ALVAKATREFLRTRKELVVLKADEGNKTVIMNGNDYK
FT                 SKMLALLSDAKTYATANRDPTSSIQSKNDEIVKRLKRLDAINDRLENELMS
FT                 RKALCPRIYGQPKAHKAGLPLRPVVPNMTAPTYALSKFVGQILQSSLQSTY
FT                 NVRDSYSFCDYINGITLPADYVLVSLDVVSLFTCIPFELVRRDVTFNWSDI
FT                 QKHTDINLEIMLEIIEFIMKSCYFTFEGKFYSQIFGTAMGNPLSSPLADLV
FT                 MENLMHAVVKKLDFQPPVLKKYVDDLIVALPLNKLKHVQDSFNSYSQHIQF
FT                 TYELEENRRLPYLDMVLVRTEAQQIRTEWYRKPISSGRFLDFFSCHTTSQK
FT                 VNTAMNFIQRVDKLSTNLNTREKMKIVDRELEINHYPKPLRRRLINCQLCN
FT                 RSSNGNQQQQQQTQQAEPSHQQTNICYRSIPNIPTLSQTIAKTLKQDYPEV
FT                 RLAFRNTNTVGSSFFSNMKDKVPTENHTNVIYAIPCNECESSYIGMTTTQL
FT                 KTRMSSHRSDIKRLDELLQAGHTTDDYKIAELRQKTALLEHSIAKQHSFDT
FT                 KKVRILDQHNRGTALPILEMCHITNNNHTVNKRTDTEGLSIIYAGLLHTLK
FT                 TKNYKHRKPNTVTPGETEQE"
FT   CDS           1763..600
FT                 /product="Penelope-3_CQ_2p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="SRFYCPRQLLVRQALCAFAETLSWLSPPVLKKYVDDL
FT                 IVALPLNKLKHVQDSFNSYSQRIRFTYELEENRRLPYLDMVLVRTEAQQIR
FT                 TEWYRKPISSGRFLDFFSCHTTSQKVNTAMNFIQRVDKLSTNLNTREKMKI
FT                 VDRELEINHYPKPLRRRLINCQLCNRSSNGNQQQQQQTQQAEPSHQQTNIC
FT                 YRSIPNIPTLSQTIAKTLKQDYPEVRLAFRNTDTVGSSFFSNMKDKVPTEN
FT                 HTNVIYAIPCNECESSYIGMTTTQLKTRMSSHRSDIKRLDEPLQAGHTTDD
FT                 YKIAELRQKTALLEHSIAKQHSFDTKKVRILDQHNRGTALPILEMCHITNN
FT                 NHTVNKRTDTEGLSIIYAGLLHTLKTKNYKHRKPNTVTPGETEQE"
XX
SQ   Sequence 4117 BP; 1161 A; 955 C; 900 G; 1101 T; 0 other;
     caatttttac aagaaattta cgagtagtta tgctctcgac tgttactcta cgattttgga        60
     tttggttttt cggctttcag tcatttagca gtgaaaacaa tgtattgttt caatttccga       120
     cgtttcggca aatttattgc ctttttcaag gattctaaaa aatatttttt tttgttttta       180
     actattagtg cttgttttag gtgggaaaat actgttggtt acttacaaaa acggtttgtt       240
     ttcttgttat ttttggggtt ttgggtaaat tgataactgt cttttgttgt tgttcctcag       300
     tcttagttgg ctgtaatttt aagggtttgc acaaaggggg gggggggggt gttaaaattg       360
     agcaacgttt caagtggttc taagggcact tactgcatag cagcacatat tatgctggta       420
     gctgctggtt tcggtttcga aaaaactttt tgtgttgcac tatccacgaa acggtcaatt       480
     tcaatcgaac ggagcttaat ggcggtttgt tcaccaaaaa gcgtcaaagg catggctaga       540
     atttgggtca ttttgtgtac taaatgtggg tcaaatgtgg gagaagggag ggaatactat       600
     tcttgttctg tttcacccgg tgttactgtg ttgggttttc tgtgtttata gtttttagtt       660
     ttaagtgtgt gtagtaatcc tgcgtagata atactcaggc cctctgtatc tgtacgtttg       720
     tttacggtat ggttattgtt cgtgatatgg cacatctcta ggattggtag agctgtacca       780
     cggttgtgtt ggtctaagat tcttactttt ttcgtgtcga aagaatgttg tttcgcgatg       840
     ctgtgctcga gcaaagctgt tttctgcctc agctcggcta tcttgtagtc gtcagtggtg       900
     tgtcccgcct gtagcggctc gtccaaccgt tttatgtcgc ttctgtggct cgacatcctc       960
     gttttcagct gcgttgttgt catcccgatg tacgaactct cacattcgtt gcatgggata      1020
     gcatagatga cgttggtgtg gttctccgtg ggcaccttgt ccttcatgtt gctgaagaag      1080
     cttgagccca cggtgtcggt gttgcggaaa gctaaccgta cctccgggta gtcctgcttg      1140
     agtgttttgg ctatagtttg tgacaaggtt gggatgtttg gtatggatcg gtagcagatg      1200
     tttgtctgct ggtggctcgg ttcggcttgt tgcgtttgtt gttgttgttg ttggttgccg      1260
     ttgctggaac ggttacatag ctggcagttg atgagtcgac gccgaagggg ttttgggtaa      1320
     tgattgattt ctagctccct gtccacgatc ttcatttttt cccgagtgtt taagttggta      1380
     gacagtttgt ctacacgttg tatgaagttc atagctgtat tgaccttctg gctcgtggtg      1440
     tggcaggaga agaagtccag aaaacgaccg ctcgaaattg gctttcggta ccattccgtc      1500
     cggatctgtt gggcttcggt gcggaccaat accatgtcca gatacggcag tctcctgttt      1560
     tcttctagct cgtaggtgaa tcggatgcgt tggctgtagc tattgaacga gtcttggacg      1620
     tgtttcaact tgttcagggg aagcgctacg atcaggtcgt cgacgtactt cttgagcact      1680
     ggtggcgaaa gccacgagag agtttctgcg aacgcgcaaa gagcttgtcg tactaaaagc      1740
     tgacgagggc aataaaaccg tgattatgaa cggcaacgac tacaagtcta agatgctagc      1800
     tctactctcg gacgccaaga catacgccac ggccaatcgc gacccaacat caagtatcca      1860
     gagcaagaac gacgagattg ttaagcgttt gaaacgacta gatgccataa acgatcggtt      1920
     agagaatgag ctaatgtcca gaaaagcttt gtgcccaaga atctacgggc aacccaaagc      1980
     tcacaaagct ggattaccac tacgaccagt agttccaaac atgacagcac ccacctacgc      2040
     tctctcaaag ttcgttggac agatactgca gagctcactg caaagcacct acaacgtaag      2100
     ggactcctac agcttctgtg actacatcaa cggcatcacc ctcccagctg actatgtgtt      2160
     ggtatccctg gacgttgttt ctcttttcac gtgcattccc ttcgaacttg ttcgacgcga      2220
     tgtcacgttc aactggagcg acatacagaa acacaccgac ataaacctgg aaatcatgtt      2280
     ggaaatcatc gagttcatca tgaaatcatg ctacttcacg ttcgagggaa agttctattc      2340
     acaaattttt ggaactgcca tgggtaaccc cctgtcgtcc ccactagccg atctcgtcat      2400
     ggagaatctg atgcacgccg tcgtcaaaaa gctcgatttt caaccaccag tgctcaagaa      2460
     gtacgtcgac gacctgatcg tagcgcttcc cctgaacaag ttgaaacacg tccaagactc      2520
     attcaatagc tacagccaac acatccaatt cacctacgag ctagaagaaa acaggagact      2580
     gccgtatctg gacatggtat tggtccgcac cgaagcccaa cagatccgga cggaatggta      2640
     ccgaaagcca atttcgagtg gtcgttttct ggacttcttc tcctgccaca ccacgagcca      2700
     gaaggtcaat acagctatga acttcataca acgtgtagac aaactgtcta ccaacttaaa      2760
     cactcgggaa aaaatgaaga tcgtggacag ggagctagaa atcaatcatt acccaaaacc      2820
     ccttcggcgt cgactcatca actgccagct atgtaaccgt tccagcaacg gcaaccaaca      2880
     acaacaacaa caaacgcaac aagccgaacc gagccaccag cagacaaaca tctgctaccg      2940
     atccatacca aacatcccaa ccttgtcaca aactatagcc aaaacactca agcaggacta      3000
     cccggaggta cggttagctt tccgcaacac caacactgtg ggctcaagct tcttcagcaa      3060
     catgaaggac aaggtgccca cggagaacca caccaacgtc atctatgcta tcccatgcaa      3120
     cgaatgtgag agttcgtaca tcgggatgac aacaacgcag ctgaaaacga ggatgtcgag      3180
     ccacagaagc gacataaaac ggttggacga gctgctacag gcgggacaca ccactgacga      3240
     ctacaagata gccgagctga ggcagaaaac agctttgctc gagcacagca tcgcaaaaca      3300
     acattctttc gacacgaaaa aagtaagaat cttagaccaa cacaaccgtg gtacagctct      3360
     accaatccta gagatgtgcc atatcacgaa caataaccat accgtaaaca aacgtacaga      3420
     tacagagggc ctgagtatta tctacgcagg attactacac acacttaaaa ctaaaaacta      3480
     taaacacaga aaacccaaca cagtaacacc gggtgaaaca gaacaagaat agtattccct      3540
     cccttctccc acatttgacc cacatttagt acacaaaatg acccaaattc tagccatgcc      3600
     tttgacgctt tttggtgaac aaaccgccat taagctccgt tcgattgaaa ttgaccgttt      3660
     cgtggatagt gcaacacaaa aagttttttc gaaaccgaaa ccagcagcta ccagcataat      3720
     atgtgctgct atgcagtaag tgcccttaga accacttgaa acattgctca attttaacac      3780
     cccccccccc cccccaaccc cccttttgtg tcaaaccctt aaaattacag ccaactaaga      3840
     ctgaggaaca acaacaaaag acagttatca atttacccaa aaccccaaaa ataacaagaa      3900
     aacaaaccgt ttttgtaagt aaccaacagt attttcccac ctaaaacaag cactaatagt      3960
     taaaaacaaa aaaaaatatt ttttagaatc cttgaaaaag gcaataaatt tgccgaaacg      4020
     tcggaaattg aaacaataca ttgttttcac tgctaaatga ctgaaagccg aaaaccaaat      4080
     ccaaaattgt agagtaacag tcgagagcat aactact                               4117
//
ID   Penelope-3_FoCa repbase;    DNA;    INV; 2915 BP.
XX
AC   .
XX
DT   05-NOV-2019 (Rel. 24.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_FoCa.
XX
NM   Penelope-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2915
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2736-2736 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. The sequences 1-283 and 2632-2915
CC   are Penelope LTRs.
XX
SQ   Sequence 2915 BP; 1058 A; 652 C; 431 G; 716 T; 58 other;
     tcatggaggc kctgtacata caaaagaccc ccaacacaat gaacaaggac tccggcatgg        60
     agattaaccc aatttggtcg tcgctawtgg ttccacttmt caagcaacca taaattattt       120
     mgattttaaw tttcaagtct stgggaataa taataatcga tttgtaatat tttccgtcct       180
     gawgacgatc gcaatcgaga tcgaaagctt gacaccattt agaaaacagt aaagtttttc       240
     tcawttgtac atccacaatg tccgtaaata akatttctcc caattttgaa ttctgtggat       300
     ggaagamctt aaaactactc ataaaaagac aacacggcga gtctatgctg atgsatattc       360
     ttcaatacga aaaacaagag atgaagaaga tcaagataag gaatgataca atatttctga       420
     aagatgcaaa tcacttggca ttgttcccaa tgktctgaag atwaaaaatm actkgmaata       480
     cctccgtcaa agtcattckt ttctcmaaaa acggaaacct cttttctaaa actwcatatt       540
     aactacaaat tcgcccaact caacgaaatt aaaaaaactc tggamakttt gmatcagaaa       600
     ttaamcctmc tctcgccaga kctactacaa cacttcaact cacttwtgga aaagagaaaa       660
     ggcagctaca acgacatcat caagcaacgc caaagawcaa aawttgacca cctgatgaaa       720
     aaaatgastc cmacwccaat ccaaaattcm caacccgcac accgmgttca cacwatttcm       780
     aacaaatcca gcgccataaa cttgtcatca agaamaatca mcccgcagga ggagaaaatc       840
     cttgaattgg gcctcaacta cgccgtcccc acaaaacwcc accagcaatc actcgttgaa       900
     gctggaatca acatcgagct gtgtcttmaa gatttcgaag tcactgamca wgcgaagaac       960
     aagattmgat ckgatattgc tgccatmata aatcagagcg aaacaaagaa kacccaaaaa      1020
     gaaaaaactg tgcwtggatt kcwcwacaaa ccaaatccat aaaaagtgac ccttcgattg      1080
     tgatctgccc tgckgacaaa ggaaacgcga ccgtcatcct taataaagtc gactacaact      1140
     ccaaaattga aacccttctg tccgatccta tatatgaaac tttatcaaat gatcccactc      1200
     cagctctaac aaaagaactt aaagatacct gcaaaagtct acttaagctg aaaaggatat      1260
     caaaatcaga atatgacaca atwaccagag gaaatcacaa gtgtccaaat ttctacggcc      1320
     ttccmaaaat ccacaagcaa ggagccccac tacgcccaat agttgatttc agaaattcac      1380
     ccctwtacaa kttatcgttc ttcctcaaca agattctcaa gtcaatcacm ggtcaatttc      1440
     ccacwtccct aaggaattcg tacagtttcg cgaaggacat taaaggattt cgtgtcccaa      1500
     aaaactacaa actcgtgtcc tttgacgtgg tgtccctgtt caccaaggta cccttacaag      1560
     aaacccttaa tcacataaag actcgactat cagaatccaa aatttggcaa aagtacacca      1620
     gcctcacaaa agaagacctt atcaaactga tatcgctatg catgaaatca aactatttct      1680
     catggaactc gcggttttac aagttatcgg acggaacacc aatgggaagc ccattatccc      1740
     caatttttgc cgaatttttt ctacaatctc tagaaaaaga aataatttta aacaacccta      1800
     acatcgaata tttcaagaga tatgtagacg actgcttagc atgcatccat aaagattaca      1860
     tagaacaact tttgagtgtc atgaactcat atcatccttc catccaattc accatagagg      1920
     aagaagaaaa taatcagata ccgtttttag atgtactact tatcaaagac gacaatggcg      1980
     caatccatcg aaatatatac cggaaaccaa cacacaccgg ccgttatttg aattatgaat      2040
     cttaccacca ttactcccac aaattatcag taatagatgc tttagttttc agagcactca      2100
     tcatttgtga ccaagaattc ctagataaag aattggacca tatcgagatg acgctgataa      2160
     aaaacaacta cccgaagtct ctaatcaaga tgcgtattga aaaaatgaga atgaaaattg      2220
     caaattccaa tcaaaattca gacaacccca ataatgacaa aaaaccacgg atgatcctgc      2280
     catatatggg tccaattaca tacagactga cccagtactt acgacgaaca cttaattgcg      2340
     aatttggcta tattcctgga agaaaactga agaatatgtt atgcaaccac aaagagaaaa      2400
     ctcaagcaga tgcagttggt gtctacaaaa ttacatgttc ctgttccagt acctacattg      2460
     gagaaacttc tcgtccattc aaaacacgaa taaaggagca cattaaggac accgaaaaac      2520
     gaaaagaaag ctcagcagtt gcaacacaca agatagaata tccacagcat gatataaatt      2580
     ttaactcagc aagtttaatt tttcatgaac caagatattt tcacagaaaa ttcatggagg      2640
     ctctgtacat acaaaagacc cccaacgcaa tgaacaagga ctccggcatg gaaattaacc      2700
     caatttggtc gtcgctaatg gttccacttc tcaaacaacc ataaattatt tcgatttwaa      2760
     tttttcaagt ctctgggaat aataataatt gatttgtaat attttccgtc ctgatgacga      2820
     tcgcaatcga gatcgaaagc ttgacaccat ttagaaaaca ataaagtttt tctcatttgt      2880
     acatccacaa tgtccgtaaa taatawttct cctaa                                 2915
//
ID   Penelope-3_LMi repbase;    DNA;    INV; 2557 BP.
XX
AC   .
XX
DT   05-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_LMi.
XX
NM   Penelope-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2557
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3178-3178 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2309
FT                 /product="Penelope-3_LMi_1p"
FT                 /translation="SNRAKNICAQASKALLRERIRHIRSSLDSSNRKLIEL
FT                 HLALSSKLAEEDWEKVDRLTFQQAERTNDSVATRQMKKFDNLQQKTTGNGQ
FT                 TMDTQRTVVNLSSHELSDAATQILSKGMNFAITPRRVPKEDIIESVEASLR
FT                 HLPQAEAEKIRQETVRVLAHAKPPKQNISNEERRAIIELKNNPDLVVVQSD
FT                 KGNATVVMNTTDYDDRMEKLLSEPIYKKLKGDPTAKVIKQTQALLKKTRMN
FT                 FDTARRLNPQVPQAPRIYGVPKIHRESFPLRPIVCSIDSPTYRLAKELVPK
FT                 LQHLVGHTDSYVKDSTHFVALLEEKRISTTDLMVSFDVKSLFTNVPVSDTM
FT                 NILEERVPPDVCDLVQHCLTTTYFRWKGEFYEQTDGVAMGSPLSPVAADIF
FT                 MEAFEETALQSAPLRPDCWLRYVDDTFVIWPHGEEELQNFHQHLNQQHNKI
FT                 QFTMEIEKNGVLPFLDVEVYRKPEGKLGHRVYRKATSTGRYLHATSHHHPT
FT                 QKKSVLHTLTKRAHRISDEQHLKAELQNIRSIFEANGYGKRMIEQTMTSND
FT                 GNKREEQKEEQTIALLPYVKGVTERVGKILRREGIKPIFRSNNKIRDVLGS
FT                 MKDKTDKLHTAGVYEIGCECGQVYIGETGRPINTRIAEHERYIRLGQHTKS
FT                 AVAEHQEECGKQIGFQEVTVLAKQPYTLKRKIREAIEIAKRPGNMNREDGY
FT                 RLPASWLPAVAALRDDTARSAVHRGPHSPETTAAARTQSKQHALAGARHQC
FT                 YVTATTAPHSPVSTNGKH"
XX
SQ   Sequence 2557 BP; 824 A; 634 C; 609 G; 489 T; 1 other;
     agtcgaacag ggcgaagaat atttgtgcac aagccagcaa agccttgcta cgggaaagga        60
     tccgccatat acgcagcagc ctcgactcca gcaacaggaa gcttattgaa ctacacctcg       120
     ccctttcgag taaacttgct gaagaggact gggagaaagt ggataggtta accttccagc       180
     aagccgaaag gacaaacgat agtgtcgcca cccgtcagat gaagaaattt gataacctgc       240
     agcagaaaac tacgggcaat ggacaaacaa tggacacgca gcgaacggtg gtcaaccttt       300
     ccagtcatga attaagtgac gcagcaacac aaatcctgtc caaggggatg aatttcgcaa       360
     tcacacctcg acgagtccct aaagaagaca tcatagaatc cgtcgaggca tcgctacgtc       420
     accttccaca agcagaagca gagaagatcc gacaagagac agttcgagtc ttggcgcatg       480
     caaagccacc aaagcagaac atcagcaatg aggaacgtcg tgctatcata gagttgaaga       540
     acaaccccga cctagtagtg gtacagtcsg acaaggggaa cgccacagtg gtgatgaata       600
     ctacagatta cgacgaccgg atggaaaaac tactaagtga acccatctat aagaagctca       660
     agggggatcc gacggccaag gttataaaac agacgcaagc actgcttaag aaaaccagaa       720
     tgaacttcga cacggccaga agactgaacc cgcaagtccc acaggcacca aggatttatg       780
     gggttccgaa gatccaccgg gagtcttttc ctctaaggcc tattgtctgc agtatagact       840
     caccgactta ccgacttgca aaagaactgg taccgaaact ccaacatctc gtgggccaca       900
     cggactctta cgtcaaggac tcaacccatt ttgtggcact tttagaagaa aaacgaatct       960
     ccaccacgga tttgatggtc agcttcgacg tgaagtcctt atttacaaat gtaccagtgt      1020
     cggataccat gaacatcctg gaggaacgtg ttccacccga cgtttgtgat ctggtgcaac      1080
     attgtttaac gaccacctat ttcaggtgga aaggggaatt ttatgaacag acggacggag      1140
     ttgcaatggg ttcacctctc tcgcccgttg cagccgatat tttcatggag gcattcgagg      1200
     aaacagctct ccagtccgca ccactacgcc cagactgctg gctgcgatat gtagacgaca      1260
     cgtttgtcat ctggcctcat ggagaagagg agctgcagaa cttccatcaa cacctcaatc      1320
     aacagcacaa caagatccag ttcaccatgg agattgagaa gaatggggtg ctccctttcc      1380
     tcgatgtaga ggtttaccgg aagccagagg gcaaactagg ccatcgggta tatagaaaag      1440
     ctaccagcac aggcaggtac cttcacgcaa cttcccacca tcatcctacg caaaagaagt      1500
     ccgtgctcca cactctaact aagagggccc atcggattag cgatgaacaa cacctgaagg      1560
     cagaattaca aaacatcagg tccatcttcg aagcaaacgg ttatgggaag aggatgattg      1620
     agcaaactat gacatctaat gatggaaata aaagggaaga gcaaaaggaa gaacaaacca      1680
     tcgccctatt gccatatgta aaaggagtca ccgaacgagt gggcaaaatt cttcgtcgag      1740
     agggcatcaa acctatattt cgcagcaaca ataaaataag agatgtccta ggctcaatga      1800
     aggacaaaac tgataagttg cacacagccg gagtctatga aatcggctgt gagtgcggcc      1860
     aggtgtacat tggagaaact gggcggccga ttaacacaag gatagccgag cacgagaggt      1920
     acattcggct gggacagcat acgaagtcgg cagtagctga acaccaggaa gagtgcggca      1980
     aacagatagg ttttcaggaa gtcactgtac tggcaaaaca accctacact ttgaagagga      2040
     aaatcaggga agcaatagaa atagctaagc gacccggaaa tatgaacaga gaagacgggt      2100
     atagacttcc ggcgtcttgg ctgccagcag tagcagcgct tcgcgacgac accgcgcgca      2160
     gtgcagtcca taggggccca catagcccgg agacaacagc ggccgcgcgt acacagagca      2220
     aacagcacgc tctagccggc gctaggcatc agtgctacgt cactgctacc accgctcctc      2280
     attcgccagt ttcaaccaat ggcaaacatt aatgtaaaca ccaatcctgg acttcctttt      2340
     ccaccaatag gaagaaataa agcaaacacc aatgataaga gagctgaaac caccaatcat      2400
     aactggcaac atttaatatt taagacacca gctttccctc atccagcagt aaacgtaaca      2460
     cccagaagat ggccgcttgc aatagtggcc gaaacgtcgg tgaaatattt gatatattga      2520
     cgatgcggtc caatacccag aagagtttta tcaacaa                               2557
//
ID   Penelope-3_SIn repbase;    DNA;    INV; 2781 BP.
XX
AC   .
XX
DT   23-NOV-2011 (Rel. 19.02, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_SIn.
XX
NM   Penelope-3_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2781
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 487-487 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..2546
FT                 /product="Penelope-3_SIn_1p"
FT                 /translation="MMQAAMFAKRRQSAQHARGIHPETLSVNNINGHESLK
FT                 TGIKRLHGEAILGSVNLFTKLRKSLHVQLCSLAFLKRCRDHRVVPKCFQLK
FT                 NPLPTSIQAKVILRQASLRLVKERISATKRSIASTSQKLLGLHLFLADSLK
FT                 PELWQTLDRITHEQAVRSAEVRKQKQEEKYKKISPQAGSPLPTHTVKNLSS
FT                 HVLSPSEVSVLSKGHNFAVTPTSIPTEEIISQIETAIFRLPPEASNDIRQR
FT                 AVNILRKAKPPSQNISREERLALRNLRQNNNILILPADKGNATVVMDKEDY
FT                 CNKVNAMLSDCSVYRKLKRNPTSTIEKKTSVLLKNSGLPPETTKYLTPRES
FT                 SAPRFYGLPKIHKESVPLRPIVSNIGGPSYQLARYLTKPLQKLTGLNGSHI
FT                 KNSIDFVNKIAKIKTKPNDILVSFDVVSLFTNVPVQDTLDIIKKSDKLPAN
FT                 LFPLIEHCLTSTYFQFQGEFFEQTSGAAMGSPVSPIIANIFMEHLEDKILK
FT                 NAPLKPSTWFRYVDDTFVIWSHGKETLPPFLAFLNAQHPNIKFTMEVEQEN
FT                 QIPFLDVLVRRNGDGTLGHRVYRKPTHTDRYLHATSHHHPSQKNSVISSLV
FT                 YRALTVSEPTFLDEELQHLNQTLTRNGYNSKNINQITKRLKNKISSPNDTE
FT                 TLDEERERKMTAVLPYLQGTTERIGRILSKHNIRVIFKPQKKIAQLLPNPK
FT                 DQRPSLETPGVYKIPCVCGKVYIGETGRKISTRIKEHQRCAKYSHFSQSAL
FT                 AEHWMETGHAVQYDKSTMLAPSQGYFARKYREGLEILKHPDNLNRDKGLQV
FT                 NPIWHTVLPGFLIDRPVNQNALIG"
XX
SQ   Sequence 2781 BP; 874 A; 766 C; 553 G; 587 T; 1 other;
     gggcgcaacg gggatatata aggaccacca caaccgaagg gagctcagta tcggagctct        60
     cagccctgat gatgcaagct gcaatgtttg caaaacgtcg gcaaagtgcc caacacgcac       120
     gtggcatcca tccggaaacc ctctcggtta acaatatcaa cggccacgaa agcctcaaga       180
     ctggaataaa acgccttcac ggagaggcta ttctagggtc ggtaaactta tttaccaaac       240
     tcaggaagtc cttgcacgtc caactgtgct ccttagcatt tctaaaacgg tgccgtgacc       300
     atcgagtggt acctaaatgc tttcaattaa aaaacccttt gcctacctcc atccaggcaa       360
     aagttatcct tcgacaagca tctctacggt tagtcaagga aaggatctcg gcaaccaaaa       420
     gaagtatagc cagtacctcc caaaagcttc ttggattaca cctctttctt gctgactcac       480
     taaagccgga gctgtggcaa acactggacc gtattacaca cgaacaggcc gtccgttctg       540
     ccgaggtgag aaaacaaaaa caggaggaga aatacaagaa gatctctcca caggctggat       600
     ccccacttcc aacacacaca gtsaagaacc tcagcagtca cgtcctgtcc ccatccgaag       660
     tgtcggtact ttcaaaagga cacaattttg ctgtcacccc cacgagcatt cctacggaag       720
     aaattatcag ccaaattgag acggctatct tccgcctccc acccgaagca agcaacgaca       780
     ttagacaacg agcagtcaac atcctccgca aggctaaacc acccagccaa aacatcagca       840
     gagaagaacg cttggcactc cggaatttga gacagaacaa caacattcta attctaccgg       900
     cggataaagg aaatgccaca gtggtaatgg acaaagaaga ttactgtaat aaggtcaatg       960
     ctatgctctc ggattgcagc gtttatagaa aactgaaacg gaacccgaca tccaccatag      1020
     agaaaaaaac atccgttctg ctcaagaatt caggcctccc tcctgaaact accaaatacc      1080
     ttaccccccg ggaatcgtcg gctcccagat tctacggcct ccccaagatt cataaggaat      1140
     cggtccccct tcgccctatc gtcagcaata tcgggggacc ctcctaccag ttggcccgct      1200
     acctcaccaa accacttcaa aaactcactg gtctcaatgg atctcacatc aagaattcta      1260
     ttgattttgt gaacaaaatt gcaaagatca aaacaaaacc caatgacatc ctggtgagtt      1320
     ttgatgtggt ttcattgttc acaaatgtcc cggtccagga tacgttggac attatcaaaa      1380
     agtccgacaa acttccggcc aacctcttcc cactaataga acattgccta acctcgacct      1440
     acttccagtt tcaaggagag ttctttgaac aaacctctgg agcagcaatg ggatcccctg      1500
     tttcacccat tattgcgaac atcttcatgg aacatctcga agacaaaatt ctgaagaacg      1560
     cacccctcaa accttccacg tggttccgat acgtagatga cacatttgtt atatggagcc      1620
     acggcaaaga aactctccca cccttcctcg cttttctcaa cgcccaacac ccaaacatta      1680
     agttcacaat ggaggtagaa caggaaaacc aaattccctt cctagacgtg ttggttcgaa      1740
     gaaacggaga tggtacctta ggccatcggg tttaccgaaa accaacccac actgaccgat      1800
     atcttcacgc aacctcccat caccatccgt cacaaaagaa ttcagttatc agctcattgg      1860
     tatacagagc cctcacagtt tctgaaccaa cgttcctgga tgaggagtta caacatctta      1920
     atcagacctt gactaggaat gggtacaaca gcaagaacat taatcagata accaagagat      1980
     tgaagaacaa gatctccagt cccaacgaca ccgaaactct ggatgaagaa agagaaagga      2040
     aaatgacggc tgtccttccg tatcttcaag gtacaacaga gcgcataggc agaattttga      2100
     gtaagcataa catcagagta atcttcaaac cccagaagaa aattgctcaa ttactcccta      2160
     accccaagga tcaaagacca agcctggaaa caccaggtgt gtacaagata ccttgcgtct      2220
     gcggaaaagt gtacatagga gaaaccggga gaaagatcag tacacggatc aaggaacacc      2280
     agaggtgtgc caaatacagc cacttttcgc aatcagcctt ggcggaacat tggatggaga      2340
     ctggacatgc cgtgcagtat gataagtcta ccatgttggc cccgtcacaa ggctacttcg      2400
     ccagaaaata tcgggaaggt ctggaaatct tgaaacatcc tgacaacctc aaccgcgaca      2460
     aaggccttca agtaaatcct atttggcata ccgttctccc gggtttttta attgaccggc      2520
     cggtcaatca aaacgctctg attggctgac caaatcaacc ccccccccca cccccaccgg      2580
     gcgcaacggg gatatataag gaccaccaca accgaaggga gctcagtatc ggagctctca      2640
     gccctgatga tgcaagctgc aatgtttgcg aaacgtcggc aaagtgccca acacgcacgt      2700
     ggcatccatc cggaaaccct ctcggttaac aataatcaat ggccacgaaa gcctcaattt      2760
     tcgatgttat tcaataaata t                                                2781
//
ID   Penelope-3_TrVa repbase;    DNA;    INV; 2930 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2930
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 628-628 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           111..2480
FT                 /product="Penelope-3_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MPNFLHFSNNQFGNIHNKSNVAKVNKLKSDFDNKLLN
FT                 VLISDAFSHLSFLKQEYDSKVVKLHQFLPVDIVDKIILQNANDGFSEKLRQ
FT                 NSEKKIERLIKSSEIHCTANKIKEASKNWCVNLTCKNIPEYVLNTLALGPN
FT                 FSCFNNNMYCGKGIVEIGRACHVENIVANIESMHFDFEALRNEARIKTVDT
FT                 LKHFLHSVNSGEIRKEQNKNIGKEIFVKNVRKEIIKTEKFLKENSDLFVIN
FT                 TDKSNKTVVITKKDYNDKMMTLLSDDKVYKQIKRDLTNTQQLKNNSMVNNW
FT                 LKNKFINKEIHEGLVMKEALPPKIYGLVKLHKPGYPLRPIVSSIQSPFYKM
FT                 SKYLGEIIGKVVGKTKYHVKDSFSFQRFVKHQTVPDGYMLASLDVVSLYTN
FT                 VPIDLALKVIEDKWPKIKKFTKMPENDFLYAVKICLNSTFFQFGDMFFQQV
FT                 SGLAMGGPISAVIANLVLESAEDTLLNTLPFRCIFYKRFVDDILICIPKDK
FT                 GSLLLDHFNSFHENIQFTLEEEVEEKINFLDMTIDHIKSGKIRTKWYQKLT
FT                 HSGRYLNFFSDVPFQHKLNVINNLAKRVVNLTDYCYQTECILKAKKMLHEN
FT                 GYPEKLMNTVFKKVQAQRKRTHINVSEKPKIDLRSVVKLPYVPVLAENFKR
FT                 SLGKIGIQPVFANTFTNKKLFTNLKSKTPVEKKSSVVYKINCKNCEGSYIG
FT                 QTKRYLSERIKSHKYDKKEQTALHQHMKDMGHVFDFEQPQVLAKENNLKAR
FT                 HVLEAVHIKKCQTAINFRTDTSGLSSRYDQFFIKNQIDN"
XX
SQ   Sequence 2930 BP; 1053 A; 395 C; 501 G; 981 T; 0 other;
     tcggtcaaga tgcagtcaaa tgtgttaaag atgttggtcg actttccaga aaaattacat        60
     cgtcagaaaa caacaagtat tttctttcta aatgcaaaga actcaaggtg atgccaaatt       120
     tccttcattt ttcaaataac caatttggaa acattcataa caagtcgaat gtagcaaaag       180
     taaacaaact gaaatctgat ttcgataata agttattaaa tgtattaatc agtgatgctt       240
     tctctcattt aagttttcta aaacaagaat atgattccaa agtcgtgaaa ctacaccagt       300
     ttttaccggt tgacatagtc gacaaaatta tccttcagaa cgcaaatgat ggtttttcag       360
     aaaaactgag acaaaatagt gagaaaaaaa ttgaacgtct tattaaatca agtgaaattc       420
     actgtactgc taacaaaata aaagaggcat caaaaaattg gtgtgttaat ttaacatgta       480
     aaaacattcc tgagtatgtt ctaaatacat tagcattagg tccaaatttt tcttgtttta       540
     ataacaacat gtactgtgga aaaggaattg tggaaatagg cagagcatgt catgttgaga       600
     acattgtggc taatatagaa agtatgcatt tcgattttga agccttgaga aatgaagctc       660
     gtataaagac tgtggatact ttaaaacatt ttttgcatag tgttaacagt ggtgaaatcc       720
     gaaaagaaca aaataaaaac ataggaaaag aaattttcgt taaaaatgtc cgtaaagaaa       780
     ttattaaaac cgaaaaattt ctcaaagaaa attctgacct ttttgttata aatacggata       840
     aaagtaataa aactgttgta atcactaaaa aagactacaa tgacaaaatg atgaccttac       900
     taagtgatga taaagtatat aaacaaataa aaagagattt aacaaacacc caacaactaa       960
     aaaacaactc catggttaac aattggttaa agaacaagtt cattaataaa gaaattcatg      1020
     aagggttagt catgaaagag gcgttgcctc cgaaaatcta tggtttagta aaattgcata      1080
     agcctggtta ccctctcaga cctatcgtga gtagtataca atcaccattt tacaaaatgt      1140
     caaagtattt gggtgaaatt ataggcaagg ttgtaggaaa aacaaaatat catgtaaaag      1200
     attcttttag ttttcagaga tttgttaagc atcaaacggt ccctgatggt tatatgttag      1260
     cttcgctgga tgttgtgtct ctttatacga atgttcccat agatcttgca ttaaaagtga      1320
     ttgaagataa atggccaaaa attaagaagt tcactaaaat gcccgaaaat gattttttgt      1380
     atgctgtaaa aatatgctta aattcaactt tttttcagtt tggagatatg ttctttcagc      1440
     aagtatctgg gctagcaatg ggtggcccga tttcggcagt cattgcaaat ttagttttgg      1500
     agagtgctga agatacatta ttaaatactt tgccttttag atgtattttt tataaaaggt      1560
     ttgtagatga catcctaata tgcattccta aagataaagg tagtttgcta ttagaccatt      1620
     ttaatagttt tcacgagaat attcaattca cacttgaaga agaagtggag gaaaaaatta      1680
     attttctgga catgacaatt gatcatatta aaagtggaaa aataagaaca aaatggtatc      1740
     aaaaactaac tcattcgggt aggtatctga actttttttc tgatgtgcct tttcagcaca      1800
     aattgaatgt tattaataat ttagcaaaaa gagtggttaa tttgacggat tattgttacc      1860
     aaacagaatg tattctcaag gcaaaaaaaa tgttgcatga aaatggttac ccagagaagc      1920
     tgatgaacac agttttcaaa aaggtacaag ctcaacgaaa gcgtacccat ataaatgtga      1980
     gtgaaaaacc taaaattgat ttacgtagtg ttgttaaatt accgtatgtg cctgttttag      2040
     cggaaaattt taaaaggtcg ttaggaaaaa ttggtatcca gcctgtgttt gcaaacacgt      2100
     ttactaataa aaaattgttt acgaatttaa aaagcaaaac tcctgtcgaa aagaaatctt      2160
     ctgttgtcta caaaataaac tgtaaaaatt gtgagggatc gtatataggt caaactaaac      2220
     ggtatttaag tgaacggatt aaatctcaca aatatgataa gaaggaacaa acagccttac      2280
     atcaacatat gaaggacatg ggtcatgttt ttgattttga acaacctcag gtcttagcca      2340
     aagagaataa tttgaaagct aggcatgtat tggaagcagt acatataaaa aagtgtcaaa      2400
     ctgctattaa ttttaggact gatacatctg gtcttagttc aaggtatgat cagtttttca      2460
     ttaaaaatca aatagataat taattataaa gttttttttt tttttttttt tttttttttt      2520
     tttttttttt tttttttttt tttttttttt tttttttaaa taataaatat tgcaacaatg      2580
     taaagttggc aacatgtgta ggtatgcaca ctgattgttt tgtttcttga tttaccgggc      2640
     ctcttgggtc tcgcgtcgtt tattgtatat tagtcagtta agtttctgct ttgttatggt      2700
     tttcgatttg ctgtgtcggt tcccaatttg ggtttattgt ttttatttgc actgaggatg      2760
     gctatgattc aagccgaaac gtttgctaaa ctcatttatt attattttct cttctgtgtt      2820
     ttttaaagaa agaataaatt atgtgaaaat agtaccaaaa aataactggc tatttagctc      2880
     tcatttcaac cactatgtat tgaattagcc atattgaaaa taaattccat                 2930
//
ID   Penelope-40_LMi repbase;    DNA;    INV; 2982 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-40_LMi.
XX
NM   Penelope-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2982
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3447-3447 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(465..572,530..2305)
FT                 /product="Penelope-40_LMi_1p"
FT                 /translation="MSGTKSAEEKTCRRIRNKLKNEGALITKADKGTPWSG
FT                 CPHHKGRQGNTMVIMKQDDYRNKTLTFIEDNNIHKLTSDPTQRFHKNTQTL
FT                 LKSITHIFPKQKIKWLKQKNPKAPTLNCLPKIHKEHIPVRPVVNFRNAPTY
FT                 YLAREIHSYLQKHYVFTNNRSILNTSELIQKIKHIIIPSTATLTSFDITSM
FT                 YTNIPITETINIIKQQLQQQTDTPKSHIKETTNILKLITEQNYFTFDNQFY
FT                 SQEDGLPMGSPVSGLLANIFLNHIENKIFDTIVKPKQYKIIYWHRYVDDII
FT                 CLLDETPSRIQELHNDINNVHPKIKFTIETENDRRLNFLDLSIHRDKNQHK
FT                 FSIYRKPTTTSTAIHKHSNNPITQKQAGFQYMLHRLNKTPLSDEQYKNELQ
FT                 TIKQIATENGYDTNIIDKLNHKIKAKLKGTTNTQKQTDQKHNTSTQNINPL
FT                 NSHTPNTHTQEQKSNKTTNKWHTLTYDNKATHRIGNILKKQGLKVAYRTDN
FT                 SIQRKLKTTNTNTDKHNTSGIYQLTCQDCNSVYIGQTCRNFNTRYTEHRRA
FT                 LKSNSHSTFAEHLINMNHKPTDINTDLKILKHSKSLPQKLTIEENYHIQKA
FT                 IIERKEIINEYTALCNGTIFSALKELTENP"
XX
SQ   Sequence 2982 BP; 1332 A; 733 C; 359 G; 556 T; 2 other;
     aacacctaca taccaagaaa caagaataaa tgttgaactt tacaaaattc atctggaact        60
     aggcaaccac atctctcaga catactcaat gatttaatga atacagtcaa acaaaataca       120
     gaacaactaa tcaaaatggg agaaacaaca acaaaaaata aacacactcc tcaaacatag       180
     caacactgtt aaagatagaa acacacaacc aaaccacact ttcacaaacg ctagtcaacc       240
     tgactgacat acaattcacc aaacaggaaa caaacctctt agaaaaagga cccaaatata       300
     atgtcaacac acatattaca cacagaacaa tagagaacct tgtcacagaa agtgaattca       360
     taataaaaca acaagaaaga aacacaaatt tcaatgcagg cctcacaaga gaattaattg       420
     cagaggaaat tagatgcata ataaaagaaa acagaaatga cataatgtca ggaacaaaaa       480
     gtgcagaaga aaaaacatgt aggaggatta ggaacaaact taaaaatgag ggtgccctca       540
     tcacaaaggc agacaaggga acaccatggt cataatgaaa caagatgatt acagaaacaa       600
     aacattaaca ttcatagaag acaacaacat acacaaacta accagtgacc caacacaaag       660
     atttcacaaa aatactcaga ctcttctaaa atccatcaca cacatcttcc caaaacaaaa       720
     aataaaatgg ctaaaacaaa agaaccccaa agcacctacc ttaaactgcc taccaaagat       780
     ccacaaagaa cacatccctg tacgtcctgt tgtgaacttc aggaatgcac ccacatacta       840
     cctagccaga gaaatacact catacctaca aaaacactat gtattcacta acaacaggag       900
     catactaaac acctcagagc taatacaaaa aatcaaacac atcatcatac cctcaacagc       960
     caccctcaca tcatttgaca tcacatccat gtacaccaat atccccatca cagaaaccat      1020
     caacatcatc aaacaacaat tacaacaaca gacagacacc cccaaatcac acataaaaga      1080
     aacaacaaac atcctaaaac taataacaga gcaaaactat ttcacatttg acaaccaatt      1140
     ctactcacag gaagatggac ttcccatggg gtcaccagtc agtggactcc tagcaaacat      1200
     tttcctcaac cacatcgaaa acaaaatatt tgacaccata gtaaaaccca aacagtacaa      1260
     aataatttac tggcaccgtt atgtagatga catcatatgc ctcctggatg aaacacccag      1320
     tcgcatacaa gaacttcata atgacatcaa caatgttcac ccaaaaataa aattcaccat      1380
     agaaacagaa aatgacagaa ggctaaactt cctcgacctc tcaatacaca gagacaaaaa      1440
     tcaacacaaa ttctccatat acagaaagcc caccaccaca agcacagcca tacacaaaca      1500
     ctcaaacaat ccaattacac agaaacaagc cggattccaa tacatgctac acagactgaa      1560
     caaaacccca cttagtgatg aacagtacaa aaatgaacta caaacaatca aacaaatagc      1620
     aacagagaat gggtatgaca ctaacatcat agacaaatta aaccacaaaa ttaaagctaa      1680
     gttaaaagga acaactaaca cacaaaaaca aacagaccag aaacacaaca caagcacaca      1740
     aaacataaac ccactcaact cccatacccc aaacacccac acacaggaac aaaaatcaaa      1800
     caaaacaaca aataaatggc acactctcac atatgacaac aaagcaacac acagaatagg      1860
     aaacattctc aaaaaacaag gtttgaaagt agcatacaga acagacaact caatacaaag      1920
     aaaactaaag acaaccaaca ccaacacaga caaacataac acttctggca tctaccagct      1980
     gacatgccag gattgtaact cagtttacat tggacagact tgcagaaatt tcaataccag      2040
     atacacagaa cacagaagag cactaaaaag caatagtcat tccacatttg cagaacacct      2100
     cataaacatg aaccacaaac caactgacat aaatactgat ctaaagattc tgaaacacag      2160
     caaaagcctc ccacaaaaat taacaatcga agagaactac cacatacaga aagccataat      2220
     agaaagaaaa gaaataataa atgaatacac agccctctgc aacggaacca tattctctgc      2280
     cctcaaagaa ctkacagaaa acccataaaa cacacacaca cacacactaa aacgaaagca      2340
     acatgattca aaactcccgc ccccaccaca gtcagctgtt cttaacacta ctcccagaat      2400
     tcaactgccc accatcttgt tttcataaca taaacattga gtgaaagtga aagtgacaca      2460
     gtgcctgtcc acaacacgaa aacagcgcat atccaccaaa gtaagtgaca aaaacttgtt      2520
     ataaacacat agacattttg ttatagaagc agtagctaca gtaaaatcaa accaaaacac      2580
     aaaaactacg tcctgtattt tcgtaaaaat cccgatattt acaagctaac cattcacccc      2640
     attaaataca cacgttttgg tttgcagatg acaaactgtc aaaaactmtc agtgacgttt      2700
     tgtgagttga agaaccacaa acacaacaca tgtggtatta aggtaggcct agcataccta      2760
     taaaaataag aaacgattta tattagtctc acaattatct gtagttttca cagttaatgt      2820
     acaaaaagta acaatcattc cattgttaat ttgacagaca ataaacatcc cactgatgat      2880
     gctgcaacgc cagcgaaaca tgtatgggag aaactaaaaa acatttgtgt ttgctcaagg      2940
     cggaccatac ctataaagca aatttatttg taagcaaaca cg                         2982
//
ID   Penelope-41_LMi repbase;    DNA;    INV; 3459 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-41_LMi.
XX
NM   Penelope-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3459
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3448-3448 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           485..2554
FT                 /product="Penelope-41_LMi_1p"
FT                 /translation="MSSVRRESLKRYIRRLYGEEMYLNIKKLDKLRQRKGR
FT                 MLSSLSFLLRCREGDVVPVFARFKHHVNTRAANRIKQRASLALVRERVRDM
FT                 RHRLDVTSRDLLQLHLSIAATLTREDWDKVDGASWSLAECTMKKSTACQQA
FT                 KFERLNKKLQHDGDTRTVVNLSDKQLDEATTKVLSRGLNFAVTPRSVPVSA
FT                 FISAVEQVANTLPSSVSEEIRRETCRALTRTKPPKSNISSEERVALRQLRE
FT                 DDSIVVLPADKGNSTVILNKLEYDXKVQQLLEDTAYKPLDGDPTDKVDKKT
FT                 RTLLKETGLPEQVIKKLHAKAPVPPRLYGLPKVHKEGVPLRPIVSNIGAVT
FT                 YPTAQYLKKILSPYVGKCAHHIRNSEDFLQRLRQLHTVDSDIMVSFDVVSL
FT                 FTRVPLTDSLDLIGEKFDGALLDLFKHVLTSTYFLYGGQFYEQTEGVAMGS
FT                 PLSPVVANLFMERFEEEALASAAYQPKCFFRYVDDTFVIWPHGREKLDDFL
FT                 EHLNSRHPSIKFTMELEKDGQLPFLDVLVKRKADGTLGHSVYRKPTHTDLY
FT                 LQASSCHHPAQKNGVLRTLVHRARALSDPESLDTEMEHLQLVFSRNGYSST
FT                 DIQRALHATSKPQGTEEEAKKVAYLPYAGPISAKISRILLKYDIKSIFCPP
FT                 SKIGTMLGSVKDDLGLRKPGIYNIPCQCGMSYIGQTPGQWT"
XX
SQ   Sequence 3459 BP; 961 A; 929 C; 985 G; 582 T; 2 other;
     gacaccggcc mcgagcacag atggtggaca agccgggcgc ggacgtcagt cggagcacca        60
     ggaaagtgtc aacaactcat gagcagcgcc agacgggcgc ggaccgcgaa cggagcgcct       120
     gacgtgggac gggcctcaga cagctgccac aactacagat ggtgaacgag ccggcgcctc       180
     tcacaccagg gaagtgtaca gggcggacgc gaagcccagg cgggacaggc ctgagagagc       240
     tccacggaca gtgcggccga ggcgcggacg tctgacagag caccagggaa ggacaacagc       300
     ttactagcag cgccaggtgg gcgcggaccg caaacaaagc gcccagcgcc ttctgggcat       360
     aaatactgga cacgatcctc caaaaagcag tctcaggtag cacctgaaga aggcagcgag       420
     ttacgcggcc gaaatattgt gccagagcga cacaaacatc cggcagtaaa cccgtttact       480
     caacatgtca agtgttcgcc gggaaagcct caagagatac atcagaagac tctacgggga       540
     ggagatgtac ctcaacatca agaagctgga taagctacga cagaggaagg ggaggatgct       600
     gagttccctc agtttcctac tgagatgccg agagggggat gtagttccag ttttcgccag       660
     gttcaaacat catgtcaaca ccagagcggc gaacaggatc aaacaacgcg ccagccttgc       720
     gctggtaaga gaaagagtgc gtgacatgcg ccatcgccta gatgtcacgt ccagggattt       780
     gctgcagctc cacctttcca tagcagctac cctgaccaga gaagattggg acaaggttga       840
     tggtgcctcc tggtctttgg ctgaatgcac catgaagaaa tcaacagcat gtcaacaggc       900
     caagtttgag cgcctcaaca agaagttaca acatgatggg gacacacgga cggtggtcaa       960
     cctgagtgac aagcagctcg atgaggccac cacaaaagta ctcagcaggg gcctcaattt      1020
     tgcagtaact cctagaagcg taccggtttc agccttcatc agtgcagtgg agcaagtcgc      1080
     caacacgctg ccctccagtg tgtctgaaga gatccgcagg gagacctgca gggcactcac      1140
     caggacaaag ccacccaagt ccaacatctc gagcgaggag agggtggcac tcaggcagct      1200
     acgggaggat gacagcattg tagttctgcc ggctgataag ggtaactcca ctgtcatctt      1260
     aaacaagttg gagtatgata kgaaggtgca acaactcctg gaggacactg catacaaacc      1320
     actagatggc gaccccacag ataaagttga caagaagacc cggacactgc tgaaggagac      1380
     aggtttacca gaacaggtca tcaagaagct tcatgccaaa gcacctgtac cacccagact      1440
     ctatggactc cccaaggtcc acaaggaggg ggtccctctt cgacctattg tcagcaacat      1500
     cggtgcagtg acatacccca ctgcacaata cctgaagaag atactgtcac catatgtggg      1560
     taaatgcgca caccacattc ggaactcgga ggacttccta caacggctaa ggcagctgca      1620
     taccgtggac tctgacatca tggtcagttt cgatgtggtg tcgctcttca cacgagtgcc      1680
     actcactgat tcactcgatc tcattggaga gaagttcgat ggtgccctgc ttgacttgtt      1740
     caagcatgta ctgacctcaa catattttct ttacgggggt caattttatg agcaaacgga      1800
     aggagtggca atgggcagcc ctttatcacc tgtggtagcc aaccttttca tggaaaggtt      1860
     cgaagaggag gcacttgcat cagccgctta ccagcccaag tgctttttta ggtatgttga      1920
     tgacacattt gtcatttggc cccatggcag ggagaagcta gatgactttc tggaacatct      1980
     aaactcacgc cacccgagta taaaattcac aatggagcta gagaaggatg gacagctccc      2040
     attcctggat gtcctggtca agaggaaggc agatggcact ctggggcaca gtgtgtatcg      2100
     caagcccacc cacactgact tatatcttca agccagcagc tgccaccacc cggcacagaa      2160
     gaatggagtc ttgagaacac tagtgcacag ggctcgagct ctgtcggatc cggaaagtct      2220
     ggatacagag atggaacatc tacagctggt gttcagcaga aatggttact cctccacaga      2280
     catccagagg gcacttcatg ctaccagcaa gccacagggt acagaagagg aggcaaagaa      2340
     ggtggcatac ctgccatatg ctggacctat ctctgcaaag atcagcagaa ttctgttgaa      2400
     atatgatata aagagcatat tctgcccacc ctccaagatt gggacaatgc tggggagtgt      2460
     gaaggatgac ctggggctac gtaaaccagg catttacaac atcccgtgcc agtgtggtat      2520
     gtcatacatc ggccagacac caggacagtg gacgtaaggt gcaaagaaca ccagaggcac      2580
     accagactta gacaggtgac taaatcagcc atagcggagc actgtctgga gctcggtcac      2640
     tcgatggact acagcaacac caaaattgtg acacagacgc ctagactgtg ggacagtgtc      2700
     ataaaggagg ccatcgagat aaggtcacag acaatctaat aaaccgagac agcggttacc      2760
     agctcagctc ggcgtggagt ccggctctgg aacttatcag ggcccaacga aaggagccaa      2820
     gaaactcctc aagaagcgaa gacacctcag gagcagcgcc aggcgggcgc ggaccgcgaa      2880
     cggagcgcct gacgcgggac gggcctcaga cagctgccac gaccacagat ggtggacgag      2940
     ccgggcgcgg acgtcggtcg gagcaccagg aaagtgtcaa caactcacga gcagcgccag      3000
     gcgggcgcgg accgcgaacg gagcgcccga cgcgggacgg gcctcagaca gctgccacga      3060
     ccgggcggcg ctacagatgg tgaacgagct gggcgcggac gtccgttgga acaccaggga      3120
     agtgtcaaca cctcaggagc agcgccaggc gggcgcggac cgcgaatgga gcgcccaacg      3180
     cgggacggcc tgagagagct gccacggcca cagatggcag ccgagccggg cgcggacgtc      3240
     cgacagagca ccagggaaga gacaacagct tactagcagc gccaggtggg cgcggaccgc      3300
     aaacaaagcg cccagcgcct tctgggcata aatactggac acgatcctcc aagaagtcag      3360
     tctcaggtag cacctgaaga aggcagcgag ttacgcggcc gaaatattgt gccagagcga      3420
     cacaaacatc cggcagtaaa cccgtttatc aacatgtca                             3459
//
ID   Penelope-42_LMi repbase;    DNA;    INV; 2844 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-42_LMi.
XX
NM   Penelope-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2844
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3449-3449 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(541..801,717..2333)
FT                 /product="Penelope-42_LMi_1p"
FT                 /translation="MKAINTELHKQHTSYNTQQNDRKTLRDINKKLQNHEA
FT                 IITKADKGSTLCIMKEEEYINKTLSSSLKMALVKFKRTPQKHSTQNLNYNN
FT                 IKFFTENGISEIQKDPTKAFHAKLKLQLRNTHFLLTEWEKKYCTAMNPQAP
FT                 KLRSQPKIHKINCPIRPIVDSRNSPGYKITSKLNHILTEMYTYPANYSIKN
FT                 SKQLIEEIKNIKIPHSAQLVSFDITNLYTNIPIPETLKIIRSNLIKYKKLS
FT                 MAEIIEFIDLLELVLNHNYFTFNNRIYKQHRGLAMGSSIAGTIANIYINHL
FT                 EQNALAMKSNSMDKIIYYKRYVDDTLLLIDGDNNDINNILNTLNNQDQNIK
FT                 FTVEHENNGSINFLDLTISKVNNAHTFKVYRKPTTADSTIHNSSCHPTTHK
FT                 HAAYRAFVNRANNTPMENNAKLEEFNIIKQIAAANGYDDTLVDNLAQKSKT
FT                 KNKPIPTQKTKNKPTACIPFIGKLSYKIANIFRPHNINIAFKTHNKLQHSL
FT                 RHNVNILTDKHTHSGIYKIVCNTCNALYVGQTGREFKTRYNEHINAYHTNN
FT                 FNKSAVATHIKDTGHPFQNIKSDLHILHKMDKGHXMDLYEELEIFIHEKIH
FT                 GDLLLNDKLESNNTNFFKNFSSVECIFH"
XX
SQ   Sequence 2844 BP; 1188 A; 613 C; 384 G; 656 T; 3 other;
     gtgaggcaag aggttaattt acagttacaa aataaaatgc ttctaactat agctaaatac        60
     attcaacaag accccccgcc ccatcaagtt aacatgccaa ctagaagagt gaaagtactg       120
     gctggttctg aaatattact accaggacct gctcaaggaa acttttgaat atacatttag       180
     agttagctat tacttcagta attacagctt actaacggtt ttagatgaga tctcacacct       240
     gtagtcaatg catatatgaa gatcactcag aaccagtcca aaaaatcaac aaactaaaaa       300
     atgagcagct acaccatcaa aacaaaagta atatcaccac accgacacac aaattttaca       360
     acagagtgat caaccagact gatatcaatt tactgacaaa gaaaatagcc tactaaacaa       420
     aggtctaaaa tataatatac ctgactaagc cccaaaatca ttaaagatat tttagcaaaa       480
     aatgccacag atatagcaaa gttagggaat aatgaaaaga cagttatagc ccagaaagca       540
     atgaaagcca taaacactga actacataaa caacatacaa gctacaacac ccagcaaaat       600
     gacaggaaaa cactcagaga tataaataag aagttacaga accatgaagc cataatcacc       660
     aaagcagata aaggcagcac cctatgtata atgaaagagg aagaatacat taataaaaca       720
     ttaagttctt cactgaaaat ggcattagtg aaattcaaaa ggaccccaca aaagcattcc       780
     acgcaaaact taaactacaa ttaagaaaca cacacttcct cctaactgaa tgggaaaaga       840
     agtactgtac agccatgaat cctcaagcac caaaactaag atcacaacca aagatacaca       900
     aaataaactg cccgatacgc cctatagttg attcacgaaa cagcccagga tacaaaatta       960
     ctagtaaact aaaccacatt ttaactgaga tgtacacata ccctgcaaat tactcaataa      1020
     aaaacagcaa gcagctaata gaagaaatta aaaacatcaa aattcctcat tctgcccaac      1080
     tagtatcatt tgacatcaca aacctataca caaatatacc tatcccagaa acactaaaaa      1140
     tcatcaggtc aaacctcata aaatataaaa aactatcaat ggctgaaatc attgaattca      1200
     tagatcttct ggaactagtg cttaaccaca actacttcac tttcaacaat agaatttaca      1260
     agcaacatag aggtcttgca atgggctcaa gtatagcagg taccattgcc aacatatata      1320
     tcaaccacct agagcaaaac gctcttgcca tgaaatccaa ttccatggat aaaatcattt      1380
     attacaaacg gtatgtggac gataccttgc tcttgataga tggtgacaat aatgatatca      1440
     acaatatcct caatacacta aacaaccagg accaaaatat aaaattcaca gtggaacatg      1500
     aaaacaatgg cagtatcaac tttctggacc taactattag taaagtaaac aatgcacaca      1560
     ccttcaaagt ctacagaaaa ccaacaacag cagattccac catacacaac tcatcctgcc      1620
     atccgacaac acacaagcat gctgcataca gagcatttgt taacagagcc aacaacacac      1680
     caatggagaa caatgcaaaa cttgaagaat tcaatatcat caaacaaata gctgcagcaa      1740
     atggatatga tgacacactg gttgacaacc ttgcacaaaa aagcaaaacc aaaaataaac      1800
     caatccccac acagaaaaca aaaaataaac ccacagcatg catccccttc attggcaaac      1860
     tatcctacaa aatagcaaac attttcagac cacacaacat caacatagcc ttcaaaacac      1920
     acaataaatt gcaacactca ctgagacaca atgtaaacat actaacagat aaacacacac      1980
     actcaggcat ctacaaaata gtatgcaaca cctgcaatgc cctgtatgta ggccaaacag      2040
     gaagagaatt caaaacaaga tacaatgaac acataaatgc ctaccacacc aataacttta      2100
     ataaatcagc agtagctacc catataaagg acacaggaca tccattccag aatattaaga      2160
     gtgatcttca tatactgcat aaaatggaca aggggcatmt aatggacctc tatgaagaat      2220
     tagaaatctt catccatgaa aaaatacatg gtgaccttct gctaaatgac aaactggaaa      2280
     gcaacaatac caatttcttt aaaaatttct ccagtgttga atgtattttt cattaaaatg      2340
     taaaattaat aatgtaactc tgattgaata wttctttaaa atgtagcaac ttctgtttca      2400
     acacatgcta tctacatatg cacattttat ggcatattca ctgtaaatat tgatgtaagt      2460
     aggttatctt agcttctaag gatctttggt acagtgtaaa catctaatac aaaatgtcta      2520
     catgtggtgt atacgtaact gtgttcttgt gttgtgtgtg ccagacaaca agattatcga      2580
     caaaactgta agtaaataca acamtacaat aatccagaac tataatcatg aaacataata      2640
     ctaaaatagc tgtatcttcc tgaacaggtt aaaactgtcc aaccataacc tcactggcac      2700
     ccacaacaca aaacataaca aaacagtaat gaacctgtaa ctgtaaaaat gcacccgatg      2760
     atggcagctt gctgccgaaa cgcgtcgtgc taataaaaat attagtaaaa agtgactgct      2820
     gcagtattaa attatttcaa aaaa                                             2844
//
ID   Penelope-45_LMi repbase;    DNA;    INV; 2201 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-45_LMi.
XX
NM   Penelope-45_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2201
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3453-3453 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(514..1641,1575..2027)
FT                 /product="Penelope-45_LMi_1p"
FT                 /translation="GERPITSNFEHHKLTDIWDSQTSSTAAETLVGHCPHH
FT                 VKNSTEFVKVLKGLHMEEKDLLVSFDVTSLFTRVPLEDSLALLEGHFDEDT
FT                 VKLFRHVLTTTYFKCGGRFYEQIDGVAMGSPLAPGIANLYMEHFEEVALNT
FT                 ARLKPKAFYRYVDDTFVVWPHGKEHLQEFLRHLNSIHDSIKFTMEVEENGC
FT                 LPFLDILIKRSPDGTLGHSVYRKKTHTDLYLNARSCHHPAQRNSVLSTLVQ
FT                 RARSICDKESLPLELQHLRETFRKNGYSETQIRRALXTDKRREDKPEEEEA
FT                 KRVAFLPYAGAPTAKIARILKKHGIKAIFHAARKVKDVLGSTKDPLGLQTP
FT                 GIYSIECECGKLYIGQTQRCISQRXASTSGMHAAVHRADATVHIPTPCEHV
FT                 RNARLGQXSKSAVAEHSIDEGHTFEFEETKKMCGASGFWDSVFKEAVEIRL
FT                 QDNLVNRDSGFQLSAAWNPTIEKIRQERSVLNVAASADRMDSRRGPKHVPE
FT                 PRRVPPPPAAPRPPPPTRQPLPKALIGRLQK"
XX
SQ   Sequence 2201 BP; 630 A; 596 C; 569 G; 402 T; 4 other;
     cagtgccaag acctcatcaa cctgacgaga gatctggatg agcaaacatc tccgtgctgt        60
     cgaaaggatt gaactttgct ccggttccta gaagtttacc aaacgcgaca taatcagcaa       120
     cgtcgagcaa gccatacgtg gtctcccttt ggaggccgct gaagaagtga ggagagagac       180
     ttcagaatac tcgaaaaagc tagaatgccg aagaacaaca ttcggcagca gaacgcaggg       240
     cctgctggcc ctctgatgac aaagatatgt ggtcctagca gcagataaag gcaatgccac       300
     tgtgctactg aagacagaag attactggca aaagatcgag tctctgctgc aagacccagc       360
     atacaaacaa gtggggaaag gtgtgactgc ttcagtcaca cgcaagacca tcgagcttct       420
     caacaactcg gggtttgaca ggaacaccat cagaaggctc taccccaggg caccggcgcc       480
     cccacgactg tatggactcc cgaagatcca taaggagaac gtcccattac gtccaatttt       540
     gaacaccata aactcaccga catatgggat agccaaacat ctagcacagc tgctgaaacc       600
     ctcgtgggtc actgcccaca ccacgtcaag aactcgacag aatttgtcaa ggtactcaaa       660
     gggctgcata tggaagagaa ggacctactg gtcagctttg acgtcacgtc ccttttcacc       720
     cgcgtgccac tggaagattc cctggcactc cttgagggac actttgatga agacaccgtc       780
     aaactattcc gtcatgtgct aacaaccacc tatttcaaat gtggtgggag gttctatgag       840
     caaatagacg gagttgccat gggctccccc ttagctcckg gcatcgccaa tctttatatg       900
     gagcactttg aagaagtagc tctgaacacc gcacgcctaa aaccaaaggc attctacaga       960
     tacgtagatg acacgtttgt ggtatggcca cacggcaagg aacacctaca agagtttctg      1020
     cgccatctca acagcataca cgacagcatc aagttcacga tggaagtaga agagaacgga      1080
     tgcttaccct tcttggacat cttaatcaag agaagtccgg atggtacgtt gggacactcg      1140
     gtctacagga agaagaccca cacggacctt tatctcaatg ctcggagttg ccaccatcca      1200
     gctcaacgca actcggtact aagcacgtta gtgcaaagag ccaggtccat ctgtgacaaa      1260
     gagagtctgc ctctggagtt gcagcatctg cgggaaacct tccgcaaaaa tggctacagc      1320
     gagactcaga taagacgcgc cttawggaca gacaagaggc gggaggacaa gccagaagaa      1380
     gaagaagcta aacgtgtggc gttcctgccc tatgctggcg cgccaacagc caaaatcgcc      1440
     agaatactga aaaagcacgg tataaaagcc atcttccacg cagcccgaaa agtaaaggac      1500
     gtacttggct cgaccaagga ccctttaggg ttgcagacac cgggcatcta cagtatcgag      1560
     tgcgaatgcg gtaagctgta catcgggcag acgcaacggt gcatatccca acgccktgcg      1620
     agcacgtcag gaatgcacgc ctagggcagg maagcaagtc cgctgtagca gagcacagca      1680
     ttgacgaggg gcacaccttc gagttcgaag aaactaagaa gatgtgcggt gccagtggat      1740
     tctgggactc agtcttcaag gaggcagtgg agatacgtct ccaagacaac ttggtcaacc      1800
     gggacagcgg atttcagctg agtgcagcgt ggaatcccac gattgagaag attaggcagg      1860
     aacgctctgt tctgaacgtg gcggcgtccg ccgacagaat ggacagccgc cggggcccga      1920
     agcacgtacc agagccgcgc cgcgttcccc caccaccggc cgcgccgcgt cccccaccac      1980
     cgacgcggca gccgcttccg aaggccctga ttggccgcct gcagaagtga acaatggtca      2040
     gacgactata tagggaggtg cagaacagca tcccgacacc tcgcctgagg atgatgagta      2100
     cgaaactcat tgaaacgttg cgccaagacg acgccaccac tcggctgata acccgagaag      2160
     atttcatcac ggaatacgcc gagagagcct gcaattgcat a                          2201
//
ID   Penelope-46_LMi repbase;    DNA;    INV; 1786 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-46_LMi.
XX
NM   Penelope-46_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1786
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3454-3454 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(172..699,642..1607)
FT                 /product="Penelope-46_LMi_1p"
FT                 /translation="RNTNSELRKSELKDPGRYNYLGIVTIGLLQDLPNTCT
FT                 LLSMHVGHCEHHIKNTADFIDRIKGRRLREEDIMVSFDVVSLFTCVPITDS
FT                 IDLLAQLFDDTIVDLFKHTLTSSYFLYGGDYFNQTDGVAMGSPLAPVVANL
FT                 FMEHFEEIALDTAPAKPSCFYRYVDDTFVIWPHGQKKLLLSLRRRYLRHLA
FT                 SWTEKIEEFLEHINSIHGHIKFTMEVEKDGSLPFLDVLVRRKPDGSLGHSV
FT                 YRKPTHTDRYLHATSYHHPAQKQSVLKTLVHRAETVSDAXNLSNELSHLRK
FT                 VFKDNGYSKRQISQAVSLKARNQKTSEEEVKKTAFLPFCGSTTGKISRLLK
FT                 RHKIDTIFRPPAKIRQLMKPVKDDVGLRTPGIYKIPCECGQFYVGQTVRTI
FT                 EQRRIEHERCFRLRYPEKSAVVEHALENGHRIAFDETSIIKRTNSFWDSVI
FT                 NEAVEIKISENTLNKDGGLQLSTAWDPVIAELKRARRTRDQNIALYGQGTG
FT                 HQ"
XX
SQ   Sequence 1786 BP; 521 A; 438 C; 418 G; 408 T; 1 other;
     gttcgtaagt ttcccaggaa cagaatggaa acgcccattc ttgtaaaatc gaacctccag        60
     ccaaactgac agctgaactc cgtggcttct ctccgatcct ctcacagtgt tctgccagcg       120
     ataagggatg ctacctgacg ccgattatga tggaaaaccg acagatgttg aagaaatacg       180
     aactcagaat tgaggaagtc agaactaaaa gatcctggaa gatacaatta cttaggtata       240
     gtgaccatcg gtctcctcca agacttgcca aacacctgca cactcctctc catgcacgtt       300
     ggacactgtg aacatcatat aaagaatacg gcggacttca tcgaccgaat taaaggacgg       360
     cgcctaaggg aggaagatat tatggttagc ttcgatgtgg tctccctttt cacgtgtgtt       420
     cccatcacag actctattga cttactggcc cagttgtttg acgacaccat cgtggattta       480
     tttaagcaca ccctgacgtc atcatatttc ttatatggtg gagattattt taaccagaca       540
     gacggcgttg cgatgggaag ccctttagct ccagttgtag ccaacctctt catggagcat       600
     ttcgaagaaa ttgccttgga cacggctcct gcaaagccta gctgctttta tcgttacgtc       660
     gacgatacct tcgtcatctg gcctcatgga cagaaaaaat agaagagttc ctggagcaca       720
     tcaacagtat ccacggccac attaaattca cgatggaagt agagaaggac ggttccctgc       780
     cattcctgga cgttcttgtc cgtcgtaagc ccgatggaag tctgggtcac agcgtttacc       840
     gcaagcccac tcacacggac cggtatttgc acgccaccag ctaccatcac ccagcacaga       900
     aacagtctgt tctgaagacc ttagtacata gagccgaaac cgtatcagat gctgawaacc       960
     tgtcaaacga gcttagccac ttacgcaaag ttttcaagga taacggctac agcaagagac      1020
     aaatatctca agcagtttca cttaaggcac gaaatcagaa gacatctgaa gaagaagtca      1080
     agaagaccgc atttttgccg ttttgtggct ccacaacagg gaaaattagc cggctcctga      1140
     agagacataa aattgacaca atcttcaggc ctccagcaaa gatccgacaa ctaatgaagc      1200
     ctgtgaaaga tgatgtaggt ctcagaacac caggcattta taaaattccg tgtgagtgtg      1260
     ggcagtttta tgtcggccag actgttcgca ctattgaaca gcgacgcata gaacacgagc      1320
     ggtgttttcg attacgctat cccgaaaagt cagctgtggt ggaacatgct ttggaaaacg      1380
     gacaccgaat tgctttcgac gagacatcta ttattaaacg gaccaacagc ttctgggaca      1440
     gcgtaataaa cgaggcagta gagatcaaaa tttcagaaaa caccctcaat aaagacggcg      1500
     gcttgcagct cagtacggct tgggatcccg taattgcgga gttgaagcgg gcgcggcgta      1560
     cgcgcgacca aaacattgcc ttatatggtc aaggaactgg gcaccagtga cgtcactggc      1620
     ggcggcgcgg ctatataagc acggcagcgg ccgcgaaatg acagtcatcc acttgacaat      1680
     ggcagaggag ttctctgtcg aaagctcgtg ggcagtaaac cacatgacgc ggcttgtaac      1740
     ccgagaagat ttcattaatg gatatcgccg cgaaaacatg cactca                     1786
//
ID   Penelope-48_LMi repbase;    DNA;    INV; 1868 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-48_LMi.
XX
NM   Penelope-48_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1868
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3456-3456 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           12..1685
FT                 /product="Penelope-48_LMi_1p"
FT                 /translation="RKMRISSFSQLTREMPQSFSMLLTTIVKYHHYWKKHI
FT                 QMPKRDPTLSYSRKILELLKNSGLPEDEMKNLRARAPRPPRLYGLPEVHKE
FT                 GIPLRPIVSAIGSPTYRLAKYLTRLMTPIVGHCEHHIKNSQMFIEKIKQIR
FT                 VGPNDILVSLDVVSLFTKVPVEDTLKLLAENFPPETVKLFRLVMTTTYFLY
FT                 GGKFYEMTDGMAMGSPLSPAXANFFMENFEERALNSAPLRPSSFFRYVDDI
FT                 FMVWPHGLEELEHFVEHMNGIHCSIQFTVELEKEGRLPFLDVLVQRKTDGR
FT                 LGHSVYRKPTHTDLYLSAQSFHHPVQKRAVLNTLIYRAKTVSDEDHLESEI
FT                 HHLKYVFRKNGYGARDIKTAFSKKRKRDNTEDPSDGQPTAFLPFCGATSSK
FT                 IGRVLGRQGIRSIFRPPRKIKEMLRPVKDSLGLRIPGIYNIPCECGSNYIG
FT                 QSIRTVSERCTEHQRHIKNRELGKSAVAEHSLTNKHKILFDETKILSQAST
FT                 YWDSVIKEAVEIRMCENNFNRDSGYNLSGAWKRALDTEMQQRHVAQRLRYY
FT                 GRGGATSADVD"
XX
SQ   Sequence 1868 BP; 565 A; 421 C; 430 G; 451 T; 1 other;
     ccgtgcactg aagaaagatg aggatctcat cgttctccca gctgacaagg gaaatgccac        60
     agtcgttctc aatgctactg actaccatag taaaatatca tcattattgg aagaagcaca       120
     tacagatgcc taaaagggac ccaactctgt catacagcag aaaaatattg gagctactaa       180
     agaattctgg actaccagaa gatgaaatga aaaatctcag agctcgtgct ccaagacctc       240
     ccaggcttta cggattacct gaggtccata aagaaggtat ccctttgaga cctatcgtct       300
     ctgccatcgg ttctcctact tacaggttag ccaagtacct aaccaggtta atgactccaa       360
     tagttggcca ctgtgaacat cacattaaaa actctcagat gttcatagag aaaatcaaac       420
     agattcgtgt cggaccaaat gatattttag ttagcctgga tgtggtatca ctgttcacaa       480
     aagttcctgt ggaggacaca ttgaaactct tggcagagaa ttttcctcca gaaacagtaa       540
     agctgttccg ccttgtgatg acaaccacct acttcttgta cggcggtaaa ttttatgaaa       600
     tgacagatgg gatggctatg ggttccccgt tgtctccagc awtggcaaac ttttttatgg       660
     agaactttga agaacgtgca ttaaattcag ctccccttcg tccatcttca ttttttcgtt       720
     atgtcgatga cattttcatg gtgtggccac atggcttgga agaactcgag cacttcgtgg       780
     agcacatgaa tggtatccac tgtagcatcc agtttactgt cgagttggag aaagaaggaa       840
     ggctgccttt cctagatgtt ttagtacaac ggaaaaccga tgggcgtctc ggccactctg       900
     tataccgcaa accaacgcac acggatttgt atctcagcgc acagagtttc caccacccag       960
     ttcagaagag agccgttcta aacacgttaa tatacagagc aaaaactgtt tctgacgagg      1020
     accatttgga atccgaaatt catcatctca agtatgtgtt ccgtaagaac ggctatggtg      1080
     cacgtgatat aaagacagcg ttttcaaaga aacggaaacg ggataatact gaagatccaa      1140
     gtgatggaca accgacggcg ttcctgcctt tctgtggagc cacatcgagc aaaataggca      1200
     gagttctggg gagacaaggt ataagatcga ttttccgacc acctaggaaa attaaggaga      1260
     tgctgcgccc tgttaaggat agcctcggcc ttaggatccc tggaatatac aacataccgt      1320
     gtgagtgcgg aagtaattat attggtcagt ccattcgtac cgtttccgaa cgctgtacag      1380
     aacaccagcg gcatattaaa aaccgagaac tggggaaatc agcggtcgct gagcacagcc      1440
     tcacgaacaa acataaaatt ttgttcgacg aaacaaaaat tttgtcccag gcctccacat      1500
     actgggactc tgtaatcaaa gaggctgtag aaataagaat gtgtgagaac aatttcaacc      1560
     gtgatagcgg gtataatctt agcggtgctt ggaaacgagc gctcgataca gaaatgcagc      1620
     agagacacgt cgcgcaacgt cttcgatact acgggagggg tggcgccacc agcgcagacg      1680
     tagactgaat ctgtgacagc gtgacgtagc ggccgaccaa tcataagccg tccatgggct      1740
     atttaaggcc accacagcac cagcactgtc agtcagcggc tcctgacgaa gaagatggag      1800
     gatatcttcg aaagcttgaa attttatcaa gaattgacgc ggcaagaagt ccgagaaagt      1860
     tttataca                                                               1868
//
ID   Penelope-49_LMi repbase;    DNA;    INV; 2489 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-49_LMi.
XX
NM   Penelope-49_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2489
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3457-3457 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(454..750,714..1349,1402..2220)
FT                 /product="Penelope-49_LMi_1p"
FT                 /translation="ASVSRIPEDQADEIRQEVAYKLRRAPPPRSNIPSSER
FT                 AAIRSLREDKDLVILPADKGNATVLLSRGDYVSKMNLLLDDSAYRRLRNDP
FT                 TERIKRKTFHFSHGTNKTEDLSLLKKSSLSEDVVKKLHPGAAVPPRLYGLP
FT                 KVHKHGIPLRPIVSNLGAPTYNLAKYLASVLAPHVGKCEHHILNSSHFIRR
FT                 LKSVCLGPSDLLVSFDVVSLFTRVPLEESLLLISDKLDDETVKLCRHVLTS
FT                 TYFLFNDAFFEQTDGVAMGSPLSPIVANLFMEDFEDMALRTSFLKPTCFWR
FT                 YVDDIFMVWPHGMDALNHFEDGKLPFLDVLVQKNSDGTLGHGVYRKPTHTD
FT                 LYLHATSCHPPHQRMGVLRTLVKRAYAISDAEHLGEELEHLKVVFKQNGYT
FT                 AQQICRAFQFGPKGEPLEDNYKSIAFLPFVGNISSKISRILRRFDIKSVFM
FT                 PPPKTRALLGSVKDDLGLRKPGVYRIPCYCGKTYIGQTIRTVQDRCVEHHR
FT                 HTRLLQPEKSAVAEHCLNEGHKMLYDETKLIAPASRYWECVLKESMEIRMA
FT                 DNIINRDKGFPLSKTWNPILSDIKQQRSSFRPAVSFN"
XX
SQ   Sequence 2489 BP; 626 A; 530 C; 569 G; 764 T; 0 other;
     tttaacagat gccggaatga aggtattgtt cctaagtttg ctagaatagt tcactaattg        60
     attctaatgc acaagattaa gaagctgcca gtcttgcgct agtacgtgaa cgcttcgttt       120
     tactcgtaga caactggatt ttgtttccaa agacttatat tttttgcatc ttgagatttc       180
     atcacggctt tcggccgcgt catgggagtg ggttgatagc gcttcttggg ccttttccga       240
     ctcggcacag aggggtgctg cctgcaaaca gttatcaaat ttgagcgact ttgcactcaa       300
     cagacaattc tggtgacgat ttccgtcggc gggttgtgtc aatcttacag ataaggaact       360
     ggacaacgct gcattatcgg ttttggaaaa aggtttaaat tttgcaccca cacctaaggt       420
     tgtccctatt acggaattta tttgtgctgt tgagcaagcg tgtctcgtat tccagaagat       480
     caggctgatg aaattaggca agaggttgcc tacaaacttc gcagagcacc tcctccaaga       540
     agcaatattc caagtagtga gagggcggcc atccggtctt tgagagaaga taaggatttg       600
     gttatccttc cggccgataa agggaacgca acggttcttc tatcacgtgg agactatgtg       660
     tccaagatga accttttatt ggatgactca gcctatcgta ggttacgtaa tgatcccacg       720
     gaacgaataa aacggaagac ctttcacttt taaagaagag ttccttgtca gaggatgttg       780
     ttaagaaact tcaccctgga gctgctgtcc ctccgagact gtatggccta cctaaggttc       840
     acaagcatgg aattcctctt cgtcctattg tgagcaattt gggtgcccct acctataatt       900
     tggccaaata tttagcttct gttctcgctc ctcatgttgg aaagtgtgaa catcacatat       960
     tgaactcgtc acattttatt cggcggctga agtcagtttg tcttggtcca tcagacttgc      1020
     ttgtcagttt tgatgttgtt tcccttttta cccgggttcc tcttgaagag tccttgttat      1080
     taattagtga taaattggat gatgaaacag tcaagttatg tcgtcatgtg ctgacttcga      1140
     cgtatttcct ttttaatgat gccttttttg aacaaactga cggagtggct atggggagtc      1200
     ctctttcccc catagtcgca aaccttttta tggaggactt tgaagacatg gctctaagga      1260
     cgtcgtttct taagcctacc tgtttttgga gatacgtcga tgacattttc atggtgtggc      1320
     ctcatggaat ggatgcttta aatcattttt agatcatttt aattgtctcc atcccaatat      1380
     taaatttacg atggaggttg agaagatggg aaacttcctt ttctggatgt tttggttcaa      1440
     aagaacagtg atgggacctt aggacatgga gtgtatcgca agcccacaca taccgatctt      1500
     tatcttcatg cgacgagctg tcatccgcca caccaacgta tgggggtctt gcgtactcta      1560
     gtgaaaagag cgtacgccat ctctgatgct gaacatctgg gtgaagaact ggagcatctc      1620
     aaagttgtct ttaaacagaa tgggtacact gctcaacaaa tttgtcgtgc gtttcaattt      1680
     ggtccaaaag gtgaaccatt agaggacaat tacaagtcta ttgccttttt gcctttcgtc      1740
     gggaatattt cctcgaaaat ttcaagaatt ttaagaagat ttgacattaa aagtgttttt      1800
     atgcccccac caaagactag ggccctcctt gggtcagtca aagatgattt aggactgagg      1860
     aaacccggtg tttatagaat tccatgttat tgtggtaaaa cttacatcgg ccaaacgatc      1920
     cgcacagttc aggatcggtg tgtggaacac caccgtcata ctcgtttgct tcaacctgaa      1980
     aagtcagctg ttgctgaaca ttgtctgaat gagggacaca agatgttata tgatgaaact      2040
     aaactgattg ctcctgcttc ccgctactgg gaatgtgttc ttaaagaatc catggaaatt      2100
     cgtatggccg ataatattat taatagggac aagggcttcc ctctaagtaa aacttggaac      2160
     ccgatcttat ctgacattaa gcaacaacgg tcttcatttc gacctgctgt ttcttttaac      2220
     tagccttgtt tcgacccatc gttttgccga ttttctccac cggcgcgcta ctagttctat      2280
     tgcgcctaga gggcctctac tttggtttcg cgcacgcgcg gtgggtcgtc agcggtgtat      2340
     aaaggggccg ctgtttctcg ttctgcctca gtttccggcg agtaagtgta tcagcgcact      2400
     cacctgaaga tggcagccag ttggtctgcc gaaatatcgt gtctagttga cgacggtatc      2460
     cggctgcaca cccgagatga atattatca                                        2489
//
ID   Penelope-4_AAe repbase;    DNA;    INV; 4963 BP.
XX
AC   .
XX
DT   22-DEC-2010 (Rel. 16.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope_Ele3; Penelope-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4963
RA   Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (16-DEC-2010).
XX
DR   [2] (Consensus)
XX
CC   ~98% identity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2381..4591
FT                 /product="Penelope-4_AAe_1p"
FT                 /translation="MQLLRRSIKALYGRINVKTLECYSLHLKLAKEFQDNF
FT                 QIFLTKVKIAEFCESERKRKSLSEKFNKLKYQNPKFSRPSQRPNIHNIDGI
FT                 VVNRSSEQFTDEQLTLLNKGLTYAIPKKPDTTQTVIDIETAINNNNLQTSQ
FT                 IQEIRTHTANIIRNTNTTPQNKEHNIIKQLNTKPVFYLRADKGNSTVIFDK
FT                 SKYEEIMQNKIKHGPYRIQRTDPLPGMIRRVDKALKEAKPVLGNVVNSLKE
FT                 SNPSLPRIKGLPKVHKPGNEMREIVSAIGSPTHKIAKYLVQKFQNFPKQFH
FT                 SKTVKNSKHFTEVIENLKIADDEVLVSFDVKSLFPSIPVKEAISLLEDWLL
FT                 SQYEGTDWIKQVRTYIKLTKLCMEENYFSFRDETYKQLNGAPMGNPLSPFL
FT                 SEIFMANLEKRLEDKNQLPEIWWRYVDDVFSIVKKHILPQTLETINKAHKN
FT                 IEFTYEVEQDNKLPFLDLLIVKEHSSLTFEIYRKPTNTQRIIPNTSNHSHQ
FT                 HKMSSFNHMIHRMLTIPLSETGRRKELNYIFETGQLNGYTRQTIQQLIDKR
FT                 TREQYKRSLTTLTQEQPTLKHIAVNYNDETKKLRPILRKFGFELVFTSRNN
FT                 QLQTLLGSTKDPIDSLYKSGVYQITCDHCNKIYIGQTKRTLNTRFKEHVAE
FT                 VTKAHKDTEKGHVHHFKSKVAEHIYNEQHFLNTKNIKLLRHISNPWKLDVA
FT                 ESIEIFKQNHNKLLNKDQGNGYSWLFRLIPNLHTHNT"
XX
SQ   Sequence 4963 BP; 1670 A; 851 C; 835 G; 1607 T; 0 other;
     ttaaaactac aaatgaactt taacacttca ctttttgcaa aaaaaaaata aaatactaaa        60
     atcactaagg tgagcaaata cctttaaact ctaatatgtg ttgcttatct tgacagatag       120
     gcctatttcg tctgcgactt acagacttct tcagtgtcga gtgctcgact tgaagagaac       180
     atcgcatgga tctattattt atactagaaa aagtgtgtgg gtatgttaga actagattct       240
     acctgtaatc gtatacagga ggtcattttt taattgtgta cctaatcaaa tgaaaggatt       300
     gtcaaaatta caaattcctg cttgtttggc aggtggtcaa tcaatgtgtt tatgtattgt       360
     gtgtgtgaag gttaggtata agtctaaaca gccaagagta cccatttcct tgatctttgt       420
     ttagtaattt attgtggttt tgtttgaaaa tttctatgct ttccgctacg tcaagcttcc       480
     aaggatttga aatatgtcgt aagagtttga tattttttgt gttaaggaaa tgttgttcat       540
     tgtaaatatg ttctgcaact tttgatttga aatggtgtac atgtcctttt tctgtgtctt       600
     tgtgtgcttt agtaacttct gctacgtgtt ctttaaaacg tgtattgaga gtccgttttg       660
     tttgtcctat gtaaatttta ttgcagtggt cgcatgtaat ttggtaaacg cctgatttat       720
     ataaactgtc aattgggtct tttgttgaac ctaggagagt ttggagttgg ttgtttctac       780
     tggtaaaaac taactcgaaa ccaaactttc gtaggattgg gcgtagcttt tttgtttcat       840
     cgttgtaatt gacggctata tgtttgagtg ttggttgttc ttgtgtcaga gtagtaagtg       900
     aacgtttgta ttgttctcgt gttcttttgt cgatgagttg ttgtattgtt tgtcttgtgt       960
     aaccgtttaa ttgtcctgtt tcaaaaatgt agttaagttc ctttcttcta ccagtttcac      1020
     tgagggggat tgttagcatt cgatgtatca tgtgattgaa ggaagacatt ttgtgttggt      1080
     gtgagtgatt tgatgtgttt ggaataatac gttgagtgtt agttggtttt ctatagattt      1140
     caaatgtaag tgatgagtgt tcctttacaa taagtaagtc caagaaaggc aatttgttat      1200
     cctgttccac ttcgtaagta aattcaatgt ttttgtgagc cttattaatt gtttctaaag      1260
     tttggggtaa gatgtgtttt ttaactatgc tgaaaacatc atcaacgtaa cgccaccaga      1320
     tttcagggag ctggttttta tcttctaatc gtttctctaa atttgccata aaaatctcac      1380
     ttaaaaatgg agaaagaggg tttcccattg gggctccatt taactgttta tatgtttcat      1440
     ctctaaagga aaaatagttt tcttccatgc aaagtttagt taatttaatg tatgtacgta      1500
     cttgttttat ccaatctgtg ccttcatatt gactaagtag ccaatcttct aataggctta      1560
     tggcctcttt aacaggaatg ctagggaata aagatttgac atcgaaagaa accaaaactt      1620
     catcatcggc tatttttaaa ttttcaatta cttctgtaaa atgtttggaa tttttaactg      1680
     ttttactatg aaactgtttt ggaaaatttt ggaatttctg gactaaatac tttgcaatct      1740
     tgtgggtggg tgatccaata gctgaaacaa tctcacgcat ttcattacca ggtttatgaa      1800
     ctttaggaag tcctttaatt cttggtaatg aagggttcga ttctttcaga gagtttacaa      1860
     cattacccaa aaccggtttt gcttctttta acgctttgtc aacacgtctt atcattcctg      1920
     gaagaggatt tctttgaata cggtaaggtc catgtttaat tttgttctgc attatttctt      1980
     cgtatttaga tttatcaaaa attacagtag aattaccttt atctgctctt aaatagaaaa      2040
     ccggttttgt gttgagttgt ttgattatgt tgtgttcttt gttttggggt gtagtgttcg      2100
     tgttgcggat gatgttggcg gtgtgtgttc tgatttcctg tatttgtgaa gtctgtaaat      2160
     tattattgtt gattgctgtt tcaatgtcta tgactgtttg tgtcgcgtca gtttttttgg      2220
     tatagcgtag cagtcctttg ttgagtaggg tcaatgttca tctggattat acaaggacat      2280
     tgcttttcta aagcaatgta aaaaacacag gcttacaccc gtaagtcata aggtaattgt      2340
     caaaacagct aagaacccgg acataattaa agacatagag atgcaattat tgagacgatc      2400
     aataaaggca ctctacggta gaattaacgt gaaaactttg gaatgctatt ctctacatct      2460
     aaaattagca aaagaattcc aagataattt tcaaattttc ctaactaaag taaaaatagc      2520
     agaattttgt gaatcagaaa gaaaacgtaa atctttatca gaaaaattta ataaattaaa      2580
     gtatcaaaat ccaaagtttt cacgtccttc tcaaagacct aacatacata acatagatgg      2640
     aatagtggtt aatcgttcat ctgaacaatt cacagatgaa caattgaccc tactcaacaa      2700
     aggactgacc tacgctatac caaaaaaacc tgacacgaca caaacagtca tagacattga      2760
     aacagcaatc aacaataata atttacagac ttcacaaata caggaaatca gaacacacac      2820
     cgccaacatc atccgcaaca cgaacactac accccaaaac aaagaacaca acataatcaa      2880
     acaactcaac acaaaaccgg ttttctattt aagagcagat aaaggtaatt ctactgtaat      2940
     ttttgataaa tctaaatacg aagaaataat gcagaacaaa attaaacatg gaccttaccg      3000
     tattcaaaga acagatcctc ttccaggaat gataagacgt gttgacaaag cgttaaaaga      3060
     agcaaaaccg gttttgggta atgttgtaaa ctctctgaaa gaatctaacc cttcattacc      3120
     aagaattaaa ggacttccta aagttcataa acctggtaat gaaatgcgtg agattgtttc      3180
     agctattgga tcacccaccc acaagattgc aaagtattta gtccagaaat tccaaaattt      3240
     tccaaaacag tttcatagta aaacagttaa aaattccaaa cattttacag aagtaattga      3300
     aaatttaaaa atagccgatg atgaagtttt ggtttctttc gatgtcaaat ctttattccc      3360
     tagcattcct gttaaagagg ccataagcct attagaagat tggctactta gtcaatatga      3420
     aggcacagat tggataaaac aagtacgtac atacattaaa ttaactaaac tttgcatgga      3480
     agaaaactat ttttccttta gagatgaaac atataaacag ttaaatggag ccccaatggg      3540
     aaaccctctt tctccatttt taagtgagat ttttatggca aatttagaga aacgattaga      3600
     agataaaaac cagctccctg aaatctggtg gcgttacgtt gatgatgttt tcagcatagt      3660
     taaaaaacac atcttacccc aaactttaga aacaattaat aaggctcaca aaaacattga      3720
     atttacttac gaagtggaac aggataacaa attgcctttc ttggacttac ttattgtaaa      3780
     ggaacactca tcacttacat ttgaaatcta tagaaaacca actaacactc aacgtattat      3840
     tccaaacaca tcaaatcact cacaccaaca caaaatgtct tccttcaatc acatgataca      3900
     tcgaatgcta acaatccccc tcagtgaaac tggtagaaga aaggaactta actacatttt      3960
     tgaaacagga caattaaacg gttacacaag acaaacaata caacaactca tcgacaaaag      4020
     aacacgagaa caatacaaac gttcacttac tactctgaca caagaacaac caacactcaa      4080
     acatatagcc gtcaattaca acgatgaaac aaaaaagcta cgcccaatcc tacgaaagtt      4140
     tggtttcgag ttagttttta ccagtagaaa caaccaactc caaactctcc taggttcaac      4200
     aaaagaccca attgacagtt tatataaatc aggcgtttac caaattacat gcgaccactg      4260
     caataaaatt tacataggac aaacaaaacg gactctcaat acacgtttta aagaacacgt      4320
     agcagaagtt actaaagcac acaaagacac agaaaaagga catgtacacc atttcaaatc      4380
     aaaagttgca gaacatattt acaatgaaca acatttcctt aacacaaaaa atatcaaact      4440
     cttacgacat atttcaaatc cttggaagct tgacgtagcg gaaagcatag aaattttcaa      4500
     acaaaaccac aataaattac taaacaaaga tcaaggaaat gggtactctt ggctgtttag      4560
     acttatacct aaccttcaca cacacaatac ataaacacat tgattgacca cctgccaaaa      4620
     caagcaggaa tttgtaattt tgacaatcct ttcatttgat taggtacaca attaaaaaat      4680
     gacctcctgt atacgattac aggtagaatc tagttctaac atacccacac actttttcta      4740
     gtataaataa tagatccatg cgatgttctc ttcaagtcga gcactcgaca ctgaagaagt      4800
     ctgtaagtcg cagacgaaat aggcctatct gtcaagataa gcaacacata ttagagttta      4860
     aaggtatttg ctcaccttag tgattttagt attttatttt ttttttcaaa agtgaagtgt      4920
     taaagttcat ttgtagtttt aaacatactc taatactgta att                        4963
//
ID   Penelope-4_BTa repbase;    DNA;    INV; 3133 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; TSD; Penelope-4_BTa.
XX
NM   Penelope-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3133
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 958-958 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Flanked by a TSD of 9-bp or longer. Featured
CC   with splitted repeats: pos 1-472 is invert repeat with pos
CC   2607-3078, and pos 470-512 is direct repeat with pos 3079-3132.
XX
FH   Key           Location/Qualifiers
FT   CDS           540..2981
FT                 /product="Penelope-4_BTa_1p"
FT                 /translation="MLTDFGNVTNVFGVIRESVRGKMYPDFTMADIRKYFR
FT                 LKKQIKNISGDIHFLKLCLQKKVFPKFVDKHIKNKAQSDITKIKLKQKAIQ
FT                 LEISNHYSKRTRLELEAYNLHLFLTKRMNGNWWNAVEKCLYDDINRSFFIK
FT                 KATLKKKFMCLKPNKKLVIKTREENFKNLSGYELSSEEKALLNQGIKSCFS
FT                 YCQNIEDYILDIDNASNRLQYNLKNSFKNECLPIIQKVNKHQSKRSKQHCK
FT                 LVKKLEQKNLVITKADKGNTVVILDKDNYIRRTENMLNDEAFKLLKKDPLN
FT                 KYKKQVNDCLKACNNIIADSEKKHLKINNPKIPKLYTLPKIHKPGDKMRPI
FT                 VSSVNSPAYKLAKWMNKRLNLFESFDSLSIKNSFDFVEKVKDIRLDKNDIL
FT                 VSFDVESLYPSIPLEKTKTLCRKWFEKNNISEKNIEEYMQIITVCTEQRFF
FT                 QFNNKFYIQKDGLTMGNPLSSILSELFMSDLEMNVKESSSLFKHWSRKVDD
FT                 IFAVIDRDKVDECLQLLNSIEDTVNFTVEIEKEGTLPFLDLKVIRVNNRLE
FT                 FDIYRKPTHVDVYINEKAYNPREHKLAAFRSLIQRMIKVPLTPERLNRERT
FT                 RIIEIGQKNGFEASEINRIINTAKYKQRIRNITTLQKDCEERKWVSVNYHP
FT                 AIYSDLKKVFKNYGLCVAPKNKYNLRNIGMRNLKDETPVLKKSGIYKINCS
FT                 GCEKVYIGQTKRDIETRAKEHARNIKNEETTKSAVAKHFWEAKHSIELKPE
FT                 LLKSVTKVSQLNTAEKLYIFKHRANVLNEDLDGLDNILFRALESKVQPHAC
FT                 NATTNSESVNNH"
XX
SQ   Sequence 3133 BP; 1173 A; 528 C; 554 G; 878 T; 0 other;
     tcaactaagg ctaaaatcaa cttaaaaact caattcgctt acgtatctaa ttgccaccag        60
     actagtttcg ggagctttca tccatctccc atcttcagtg gttgttgact gattcggaat       120
     tcgtggtcgc attgcacgca tgtggctgaa ctttggactc caatgctcgg aacaggatgt       180
     tgtctagtcc gtccaaatcc tcatttaaaa cgttcgcgcg gtgtttaaaa atatataact       240
     tctctgctgt gtttagttga ctgactttgg tgactgattt gagtaattca ggttttaatt       300
     ctatgctgtg ttttgcctcc caaaaatgct ttgccactgc tgattttgtt gtttcttcgt       360
     tttttatgtt cctagcgtgc tctttagctc ttgtttcgat atctcttttc gtttgtccga       420
     tgtacacttt ctcgcatcca gaacaattta ttttataaat tcccgatttt ttaatcggtt       480
     cgctgttttt tagtttcgtt cattgtttta atcgtaaata ttcaatatcg tgaaacaaaa       540
     tgttgacgga tttcggaaat gtaacaaacg tgttcggtgt gataagagaa agtgttcgtg       600
     gaaaaatgta cccggatttt acaatggctg acattaggaa atattttcga ctgaagaaac       660
     agataaagaa tatatcaggt gacatccact tcttaaaact ttgccttcag aaaaaagtgt       720
     tcccaaaatt tgtagacaaa cacattaaaa acaaagccca atctgatatt acgaaaatta       780
     aattgaaaca aaaagctatt caattggaaa ttagcaatca ctattctaaa agaacgagat       840
     tagagttaga agcatacaac ctccatttat ttttgacaaa acgcatgaat ggaaattggt       900
     ggaatgcggt agaaaaatgt ttatacgatg acattaacag aagctttttc ataaagaaag       960
     caacattaaa aaagaaattc atgtgcctaa aaccaaacaa gaaattggta attaaaacta      1020
     gagaggaaaa cttcaaaaat ctctcaggtt atgagttatc gtctgaagaa aaagccctcc      1080
     ttaaccaagg cattaaatct tgttttagtt actgtcaaaa catagaagac tatattttag      1140
     atattgacaa tgcatccaac aggctgcaat ataatttaaa aaatagtttc aaaaatgagt      1200
     gcctaccaat tatccagaaa gtaaacaaac atcaatccaa aaggagtaaa caacattgca      1260
     aattagtcaa aaaattggag caaaaaaatc tagtgataac aaaagctgat aaaggtaaca      1320
     cagtagtcat ccttgacaaa gataactaca ttagaagaac tgaaaatatg ctcaatgatg      1380
     aagcattcaa attactaaag aaagacccct tgaacaagta caaaaaacaa gtaaatgatt      1440
     gtcttaaagc ctgtaataac ataatagcag atagtgaaaa gaagcatcta aaaattaaca      1500
     acccaaagat tccaaaatta tatactttgc ccaagatcca caaacccgga gataaaatga      1560
     gaccaattgt gagcagcgtg aactcacccg catataaatt agctaaatgg atgaataaaa      1620
     gattaaattt gtttgaaagt ttcgattccc taagtataaa aaactccttc gattttgtgg      1680
     aaaaagtaaa ggatatcaga ttagacaaaa atgacatcct tgtgtcattc gatgtggagt      1740
     cgctttaccc tagtataccc ctcgaaaaaa caaaaacttt gtgcaggaaa tggtttgaaa      1800
     agaataacat tagtgagaaa aatattgagg aatacatgca aataataaca gtatgcacag      1860
     aacaacgctt tttccaattt aacaacaagt tttacattca aaaagacggc cttacaatgg      1920
     gtaacccttt atcttcaatt ttatccgaat tatttatgag tgacctagag atgaacgtaa      1980
     aggaaagtag ctcgttattc aaacattggt ctcgaaaagt tgacgacata ttcgccgtta      2040
     tagacagaga taaagtagac gagtgcttac aattactgaa ttcaatagaa gataccgtca      2100
     atttcacagt ggaaatagaa aaagagggga ctctcccatt tttagatttg aaagtaatca      2160
     gggtaaataa taggcttgaa ttcgatatat atcgaaaacc cacacatgtt gacgtataca      2220
     tcaatgaaaa agcgtataac ccacgtgagc acaaattagc cgcatttaga agtttaatac      2280
     aaagaatgat caaagtcccc ttgacaccag aaagactgaa tagggaaagg acaagaatta      2340
     ttgaaatagg gcaaaaaaat gggtttgagg catcagaaat caataggata attaacacag      2400
     caaaatacaa acaacgaatc aggaatatta ccacccttca aaaggattgt gaagaaagaa      2460
     aatgggtttc agtaaactat catcctgcaa tctattcaga cctgaaaaaa gtttttaaaa      2520
     attatggtct atgcgtagct cccaaaaata aatacaacct tagaaatatt ggaatgagga      2580
     atttaaaaga tgagacaccc gttttaaaaa aatcgggaat ttataaaata aattgttctg      2640
     gatgcgagaa agtgtacatc ggacaaacga aaagagatat cgaaacaaga gctaaagagc      2700
     acgctaggaa cataaaaaac gaagaaacaa caaaatcagc agtggcaaag catttttggg      2760
     aggcaaaaca cagcatagaa ttaaaacctg aattactcaa atcagtcacc aaagtcagtc      2820
     aactaaacac agcagagaag ttatatattt ttaaacaccg cgcgaacgtt ttaaatgagg      2880
     atttggacgg actagacaac atcctgttcc gagcattgga gtccaaagtt cagccacatg      2940
     cgtgcaatgc gaccacgaat tccgaatcag tcaacaacca ctgaagatgg gagatggatg      3000
     aaagctcccg aaactagtct ggtggcaatt agatacgtaa gcgaattgag tttttaagtt      3060
     gattttagcc ttagttgatt taatcggttc gctgtttttt agtttttttt tagtttcgtt      3120
     cattgtttta att                                                         3133
//
ID   Penelope-4_CoFl repbase;    DNA;    INV; 2183 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-4_CoFl.
XX
NM   Penelope-4_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2183
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2409-2409 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..1758
FT                 /product="Penelope-4_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MNMLKKCTNFLKNNDSLIITRADKGGAFVLLHKNDYI
FT                 TKVEDSLSNKNVYETVRSNPLKSLARRLDNLHNRLNSCDLLGNGRKVFPTT
FT                 KDKCNLARCYGLVKIHKENKPIRLIVSAINSPTYFISKWVSNFLKTNLPQS
FT                 KFNIKNSFEFTKEISQFQVPNDFCLVSFDVVALFNNIHFESVKQAIERRWH
FT                 ILTLKTNLSLTVFLEIIEFILNNNFFVFNNKYYRQIFGSAMGSPCSPILAE
FT                 LVMHDLINDLLFTSPIPIAYFKIYVDDIIACVPKNNTKDILQLLNSFDGHI
FT                 NFTIEEPKNNSINFLDTTLHWDSSGNIKTNWFQKDTHANSYLNYFSHSPVS
FT                 QKIGVVFSLVDRAIKLSDESFHKQNLKKVSIILQANNYPIEFITKYTKVRL
FT                 KKIKFQSTGETICDNVNFLPKDFVVLPYIKDCDKIFRKGFNKFNIKVIFRS
FT                 VCKFNFLNNLGKDSVDTTDKVCSVYGFKCKNCDKHYVGQTSRTVDTRTKEH
FT                 ERDCINEKDSSVVYTHMRDYGHTFDFDSVQVLDQEICYYRRLISEMVYITK
FT                 LNTVNKITDTNNLSTVLKYYIKHCLK"
XX
SQ   Sequence 2183 BP; 776 A; 309 C; 329 G; 769 T; 0 other;
     ctaaatggta gagttgtgga tccaatagat atttatataa tgaacatgtt aaaaaagtgc        60
     accaactttt tgaaaaataa tgatagtttg attatcacta gagctgacaa gggaggtgcc       120
     tttgttctac tacataagaa tgattatatc acaaaagttg aagatagtct aagcaataaa       180
     aatgtttatg aaactgtacg atctaatcct ttgaaaagtc ttgctcgtag gttggataat       240
     ttacataata gattaaattc atgtgatttg cttgggaatg gaagaaaggt ttttcctact       300
     actaaggata agtgcaatct agccagatgt tatggattag ttaaaataca taaagaaaat       360
     aagccgatta gactaattgt atctgcgatt aattcaccaa cttattttat ttcaaaatgg       420
     gtatcaaatt ttttaaagac aaatttacca caatcaaaat ttaatataaa aaatagtttt       480
     gaattcacaa aagaaatttc tcagtttcaa gttccaaacg atttttgcct agttagcttt       540
     gatgtagtag ccctttttaa caatatacat tttgaatcag ttaaacaagc aatagaaaga       600
     cgttggcata ttttaactct taaaactaat ttatcattga ctgtattctt ggagatcatt       660
     gaatttatac taaataataa tttttttgtc tttaacaata aatattacag acagattttt       720
     ggttctgcca tgggatcgcc ttgcagtcct atattggcag aactagtcat gcacgattta       780
     attaatgatt tactttttac aagccccatt ccaattgcat attttaaaat ttacgtcgat       840
     gatattatag cttgtgttcc aaaaaacaat accaaggata ttttacaact tctaaactca       900
     tttgatggtc acattaattt tacaatagaa gaacccaaga ataattctat taactttcta       960
     gatacaactt tacattggga tagctcaggt aacattaaaa cgaattggtt tcaaaaagat      1020
     acacacgcaa actcatattt gaattatttt tcacattcac ctgtatctca aaaaataggt      1080
     gtcgtctttt ccttggttga ccgtgccatt aaattatctg atgaatcttt tcacaaacaa      1140
     aatttaaaaa aagtttctat tattttacag gctaacaact atccgataga atttattact      1200
     aaatacacaa aagttcgttt gaaaaaaatt aaattccaat ctacgggcga gaccatatgt      1260
     gataatgtga atttcttacc taaagatttt gtagtgttac catacataaa agactgtgat      1320
     aaaattttta gaaaaggttt taataagttc aatataaaag taattttcag atctgtttgt      1380
     aaatttaatt ttttaaataa tttaggaaaa gatagcgttg acaccaccga caaagtgtgt      1440
     tccgtttatg gtttcaagtg taaaaattgt gataaacatt atgtgggaca aactagtaga      1500
     actgttgata ctcgaacgaa agaacatgaa cgcgattgta taaacgagaa agattcgtct      1560
     gtagtgtata cacatatgag agattatggc cacactttcg acttcgattc agtacaagta      1620
     ctcgaccaag aaatttgtta ttacagacgt ttaatatcag aaatggtata tatcactaag      1680
     ttaaatactg taaataagat tactgacaca aataatttaa gtacagtact taaatattat      1740
     atcaaacatt gtttaaaata attaaaaata caaatagagt tttatcgtgt gtttgaattc      1800
     gcgccgtttt atacatgtat acaatctttc gatattcatg tgtgtcgtta cttacatgta      1860
     cctagtccta ctttagatta tattcagaca gcttaaaagc cagtcggtta tattagagca      1920
     gatatagata ttatttaata ttaagtggac gttgctctac ataatttgta agttcattta      1980
     ttctatttaa ttgtttacac ttgtagttta tggtagctgt tgtaatattt attttcatta      2040
     taattatttt aactcagaga cttgaaaagg actgccttaa gtgcagtcga aacgttgtca      2100
     actgaataaa agactgaaca gtaagccctt ggagtttatt aattcttcgt atcattttca      2160
     ctgttcttgg agtcctctta ttg                                              2183
//
ID   Penelope-4_CQ repbase;    DNA;    INV; 4524 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-like element from Culex quinquefasciatus - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4524
RA   Jurka J.;
RT   "Penelope-like elements from the southern house mosquito.";
RL   Repbase Reports 11(1), 603-603 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1880..4426
FT                 /product="Penelope-4_CQ_1p"
FT                 /translation="MHSAKTLNQTTITMATKPSEHNKFIGLKKIIAGIHKD
FT                 IAFLKKCVEHRVTPTSHKIRTKGHTDSKIIRRVELELVKESIKKLYGRLSI
FT                 KTLECYSLHLKLAKEFPIEFEAFLTKVKVAEKCESERKRKILDNKFRQLIS
FT                 HIAPTMKPVVKPLEEFVVNRSSETFSEEQLTLLNKGLKYAVSSKPNLENIV
FT                 IDIETVINANSIDEKQTKPPPLLPAQINSVRMTVSKLIREATTKHQDNAEV
FT                 RVVKELKEKPVYYLKADKGNRVVIMDRDEYDKELLEKLGNREKYSLQRGYT
FT                 LIDMVKKVENTIKECAGLLKSVGKTAKSLRVPNPTLPRIKALPKVHKPGNE
FT                 MREIISAVDAPTSRIAKWLVEEFKSMPKPFPSRSIISSQVFTKELLESGPI
FT                 AEDEIMVSFDVTALFPSIPVKNAIGTLRDWLQSQYEGEPWRQKTIQYITFV
FT                 KLCMEQSYFQFRDCIYQQRMGASMGNPLSPFMSDVYMAALEHELQTKNLLP
FT                 ERWWRYVDDVFCIIKRDSLTTVLDTINSARRSIKFTYEMEVEGKLPFLDIL
FT                 ILREPGCPSSFSFEIYRKPTNTRRTIPATSNHSFQHKMAAYHYFIHRMTTL
FT                 PLSEAGKQKELEYIFETAEINGYSRTTIQAIIDKKERKLHRTSLTTLTPSA
FT                 EPLRRAAVEFDYRITRPLRQKLAKFGIDLVFSSRNSQLESILGSTKDPIPT
FT                 LGKPGIYEVSCGHCDMSYIGQTKRLLQTRLDEHIHTYVKIAMEEKRKGFVP
FT                 HFKSAVTEHIIEEKHNITASDAVILRHITNPSKLAVAESLEIFKAGNKRLL
FT                 NKDSGNGSTWLFKLLPIQAQKKNEEVVPTVTTNTDTPAMNLQSRTEH"
XX
SQ   Sequence 4524 BP; 1390 A; 1000 C; 977 G; 1157 T; 0 other;
     gaattgtggt ttggttgagc gttttagcag aatgcattac tgtgaataca aagagacgag        60
     ttgttccttt taattccgct atatatttta atatcttgac agatacgtat ttcgtctact       120
     acttgcagac ttcatcagtg ttctgttctc gactgaaggt tcatcgctgg tgtatccgta       180
     tttgtagtta ctgtaggtac tacctcctcg ttcttctttt gtgcctgtat aggtaacagc       240
     ttaaacagcc acgttgagcc gttacctgaa tccttgttga gtaaacgttt gttgcctgcc       300
     ttgaagattt ccaaactttc ggcgacagcc agcttcgatg ggttagtgat gtgtcttaag       360
     atgaccgcgt cgctagctgt gatgttatgt ttttcctcga tgatgtgttc ggttactgct       420
     gacttgaaat gggggacaaa tcctttccgt ttttcctcca tggcaatttt gacatatgtg       480
     tgtatatgct catccaacct ggtttgcagc aatctcttag tttgtccaat gtagctcata       540
     tcacagtggc cgcaggatac ctcgtagatg ccgggtttgc ctaaagtcgg tatggggtct       600
     ttcgttgaac ctaagatgga ttccaactgg ctgtttctac tgctgaacac taaatcgatg       660
     ccaaatttag ccagtttttg tcgtaatggg cgtgttatcc tgtagtcgaa ttctactgct       720
     gctcttcgca gtggctctgc tgatggcgta agggttgtga gtgaagttct gtgcagtttt       780
     ctttccttct tatcgatgat tgcttggata gttgttctgc tgtaaccgtt gatttccgct       840
     gtttcaaata tgtactccaa ttctttctgt tttcctgctt cgctgagggg taaagttgtc       900
     atcctatgta taaaataatg atatgctgcc atcttatgtt ggaatgaatg gtttgacgtg       960
     gctgggattg ttcttctggt gtttgttggc ttcctgtaga tctcgaaaga aaacgaagat      1020
     gggcaacctg gttctcttag gatcaggatg tctaagaaag gtaactttcc ttcgacttcc      1080
     atttcgtaag tgaacttgat gctcctgcgt gcactgttta tggtgtccag taccgttgtt      1140
     agtgagtccc ttttgatgat gcagaagacg tcatctacgt atctccacca acgttctggt      1200
     agtaggtttt tggtttgtag ttcgtgttcc aaagctgcca tataaacatc gctcatgaac      1260
     ggtgacagtg ggttacccat cgatgctccc atcctctgtt ggtagatgca atccctgaac      1320
     tggaagtagc tctgttccat gcataatttg acgaatgtta tatactggat cgttttttgt      1380
     ctccatggtt ctccctcgta ttgtgattgc agccaatccc gtagagttcc tattgcgttt      1440
     tttactggta tgcttgggaa cagtgctgtt acgtcgaagg aaaccattat ttcatcctca      1500
     gctatcggtc ccgactctaa gagctccttt gtgaacacct gcgaactgat gatcgaacgg      1560
     ctcgggatca ctaacccatc gaagctggct gtcgccgaaa gtttggaaat cttcaaggca      1620
     ggcaacaaac gtttactcaa caaggattca ggtaacggct caacgtggct gtttaagctg      1680
     ttacctatac aggcacaaaa gaagaacgag gaggtagtac ctacagtaac tacaaatacg      1740
     gatacaccag cgatgaacct tcagtcgaga acagaacact gatgaagtct gcaagtagta      1800
     gacgaaatac gtatctgtca agatattaaa atatatagcg gaattaaaag gaacaactcg      1860
     tctctttgta ttcacagtaa tgcattctgc taaaacgctc aaccaaacca caattaccat      1920
     ggcaaccaag ccttcggagc acaacaagtt catcggactg aagaaaatca tcgcaggtat      1980
     ccacaaagac atcgccttct tgaaaaaatg cgtcgaacac cgagttacac caactagcca      2040
     caagattagg acgaagggtc atacggacag caaaatcatc cggagggtgg agttagagct      2100
     tgtcaaagag agcatcaaaa aactctacgg tagactgagt atcaaaactc tcgaatgcta      2160
     ttcactccat ctgaaactag ccaaagaatt ccccatcgaa ttcgaagcct ttttgacgaa      2220
     ggttaaggta gccgagaagt gcgaatcaga aaggaaacgc aagatactgg acaacaaatt      2280
     ccgacaactg atttcccaca ttgcccctac aatgaaacca gtagttaaac ccttagaaga      2340
     gttcgttgtt aatcgttctt ctgaaacttt ttcagaagaa cagttaactt tactcaacaa      2400
     aggtcttaag tacgcggtat catcaaaacc aaacctggaa aacattgtta tcgacatcga      2460
     aactgttatc aatgctaaca gcatcgacga aaaacagaca aaacctcccc cgctccttcc      2520
     agcacaaatc aacagcgtca ggatgacggt atccaaatta atacgagaag caacaacaaa      2580
     acaccaggac aacgccgaag tacgagtagt gaaggaactc aaggagaaac ccgtgtacta      2640
     cctaaaagcg gacaagggaa accgggtagt aatcatggac cgggacgaat acgacaagga      2700
     acttcttgag aaactcggaa acagggaaaa atattcacta caacgaggat acacgctaat      2760
     cgatatggtc aaaaaagtag agaacaccat caaagaatgt gcaggccttt tgaaatcggt      2820
     tgggaaaact gcaaaatcgt tgagagtacc gaacccaact ctaccaagga ttaaagcact      2880
     acctaaagtg cataaaccag gcaacgagat gcgagaaatc atttcagcag tggatgcccc      2940
     aaccagtcgg atcgcaaagt ggcttgtcga ggaattcaag agtatgccga aacccttccc      3000
     gagccgttcg atcatcagtt cgcaggtgtt cacaaaggag ctcttagagt cgggaccgat      3060
     agctgaggat gaaataatgg tttccttcga cgtaacagca ctgttcccaa gcataccagt      3120
     aaaaaacgca ataggaactc tacgggattg gctgcaatca caatacgagg gagaaccatg      3180
     gagacaaaaa acgatccagt atataacatt cgtcaaatta tgcatggaac agagctactt      3240
     ccagttcagg gattgcatct accaacagag gatgggagca tcgatgggta acccactgtc      3300
     accgttcatg agcgatgttt atatggcagc tttggaacac gaactacaaa ccaaaaacct      3360
     actaccagaa cgttggtgga gatacgtaga tgacgtcttc tgcatcatca aaagggactc      3420
     actaacaacg gtactggaca ccataaacag tgcacgcagg agcatcaagt tcacttacga      3480
     aatggaagtc gaaggaaagt tacctttctt agacatcctg atcctaagag aaccaggttg      3540
     cccatcttcg ttttctttcg agatctacag gaagccaaca aacaccagaa gaacaatccc      3600
     agccacgtca aaccattcat tccaacataa gatggcagca tatcattatt ttatacatag      3660
     gatgacaact ttacccctca gcgaagcagg aaaacagaaa gaattggagt acatatttga      3720
     aacagcggaa atcaacggtt acagcagaac aactatccaa gcaatcatcg ataagaagga      3780
     aagaaaactg cacagaactt cactcacaac ccttacgcca tcagcagagc cactgcgaag      3840
     agcagcagta gaattcgact acaggataac acgcccatta cgacaaaaac tggctaaatt      3900
     tggcatcgat ttagtgttca gcagtagaaa cagccagttg gaatccatct taggttcaac      3960
     gaaagacccc ataccgactt taggcaaacc cggcatctac gaggtatcct gcggccactg      4020
     tgatatgagc tacattggac aaactaagag attgctgcaa accaggttgg atgagcatat      4080
     acacacatat gtcaaaattg ccatggagga aaaacggaaa ggatttgtcc cccatttcaa      4140
     gtcagcagta accgaacaca tcatcgagga aaaacataac atcacagcta gcgacgcggt      4200
     catcttaaga cacatcacta acccatcgaa gctggctgtc gccgaaagtt tggaaatctt      4260
     caaggcaggc aacaaacgtt tactcaacaa ggattcaggt aacggctcaa cgtggctgtt      4320
     taagctgtta cctatacagg cacaaaagaa gaacgaggag gtagtaccta cagtaactac      4380
     aaatacggat acaccagcga tgaaccttca gtcgagaaca gaacactgat gaagtctgca      4440
     agtagtagac gaaatacgta tctgtcaaga tattaaaaat atatagcgga attaaaagga      4500
     acaactcgtc tctttgtatt caca                                             4524
//
ID   Penelope-4_LMi repbase;    DNA;    INV; 2713 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-4_LMi.
XX
NM   Penelope-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2713
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3179-3179 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(202..1521,1356..2564)
FT                 /product="Penelope-4_LMi_1p"
FT                 /translation="MHSYITYLYGEETWRSIKRLGKLRVKKANLLSSLAFL
FT                 LRCREEKTIPRFAIVSHHVNTAAARRIFRRTSFALLRERIHHTRKQLDTNG
FT                 RELMAVHLQLTESLSVLDFDWIDAATMAQQMSAQTKTTERQKGKFSRLSQQ
FT                 QHGAESVTAERAVINMTASNINAGAMSALKKGLNFAPSPRTIPFTDIISGV
FT                 EQAVRKMPNETAEEIRRETSHILSKSKEPRPNLTREERIGLQELWNDPLIV
FT                 VLPADKGNAAVIMERANYNAKIREMLEEETYQKLPKDPTSKILRKTSELLK
FT                 RSSLEESCIKNLLPQAPRPPTLYGLPKVHKMNTPLRPIVSTIGSPTYRLAK
FT                 HLATLLXPHVGHCEHHVKNTTDFIRRIKSLRLGEEDIMVSFDVVSLFTNVP
FT                 IKDSIDLLTQLFDDTVVDLFRHTLTSYFYMVENTSTRLTVSQWEAHCGVII
FT                 HKRSHQRFHRPADPVIRRHCCGFIQTYSDVIFLYGGEYFNQIDGVAMGSPL
FT                 APVIANLFMEYFENIAIDTAPAKPSCFYRYVDDTFVVWPHGREKLGEFLDH
FT                 INSIHDKINFTMEVERDGALPFLDVLVRRKTNGCLSHSVYRKPTHTDLYLH
FT                 ATSHHHPSQKRSALRTLVHRAEVVSDNEHLQKELSHLRKVFKKNGYSNRQI
FT                 TQALHPKTRKQETVEEETKKLAFLPFCGSVTGKISRLLKRHEIDTVFRPPT
FT                 KLRQMMRPVKDDLGLRTPGVYKIPCGCGQFYIGQTVRNIEQRCVEHERCFR
FT                 LRYPEKSAIAEHALENKHRIAFEDTSVITRTNTFWDSVIKEAIEIKISEKS
FT                 LNKDGGLQLSTAWDPAIGRLKRARQARGQNIAIYGDAAEHQ"
XX
SQ   Sequence 2713 BP; 797 A; 666 C; 663 G; 584 T; 3 other;
     cgcggccaaa acattgccat atatggcgat gcggctgagc acagtgacgt cacagggggc        60
     gcaggtatgg cgkcagcaat gataagacag tcaccacttg acaatggccg agggttttcg       120
     gccgaaagct agtggatatc aaaccacttg acgcggctgg aagcccgaga gaattttatc       180
     agcataactc gccgcgaaac tatgcattca tacattacgt acctctacgg ggaggaaacg       240
     tggcgcagca ttaaacgcct tggaaagctg cgtgtcaaga aggctaattt gttaagctct       300
     ttagcctttc tactgcgctg tcgtgaagag aagacgattc cacgttttgc catcgtgagc       360
     caccatgtca ataccgctgc ggccagaaga atttttcgcc gaacgagctt tgccttacta       420
     cgagagagga tacatcacac taggaagcag ttggatacaa acggacgcga actaatggcc       480
     gttcacctgc agttgacgga gtctctttcg gttttggatt ttgattggat tgacgcagcc       540
     acaatggcac aacaaatgtc agctcagacg aaaaccactg aaaggcagaa agggaagttc       600
     agccggcttt ctcagcaaca gcatggagca gaaagtgtaa cagcagaacg cgccgttatc       660
     aacatgacgg cgagtaacat caacgcgggt gccatgtcgg ctctcaagaa aggactcaac       720
     ttcgcacctt cacctaggac tatccctttc acggacatma taagtggtgt ggaacaagca       780
     gttcgcaaga tgcccaacga aactgcggaa gaaattcgtc gtgaaacaag tcacattctc       840
     tcaaaatcca aggaaccaag accgaacttg acaagagagg aacgtattgg ccttcaggaa       900
     ctctggaatg accctcttat cgtagtcttg ccagccgaca agggcaatgc agccgtcatt       960
     atggaacgag ccaactacaa cgcgaagatt cgggagatgc tcgaggaaga gacataccaa      1020
     aaattaccga aggacccaac atcgaaaatc ctgaggaaga cgtccgagct tctcaaacgg      1080
     tcttcactgg aagaaagttg cattaaaaat ctccttccac aggcacctcg accacctacc      1140
     ttatatggcc tcccaaaggt tcacaaaatg aacactcctc ttcgtccgat cgtgagtacc      1200
     attggctcgc cgacttacag actcgcaaaa catctggcca cccttcttwc tccacacgtc      1260
     ggtcactgtg agcatcatgt caagaatacg accgacttca tcagaagaat aaaatccttg      1320
     cgtcttggag aggaggatat catggtcagc tttgatgtgg tgtcattatt cacaaacgtt      1380
     cccatcaaag attccataga cctgctgacc cagttattcg acgacactgt tgtggattta      1440
     ttcagacata ctctgacgtc atatttttat atggtggaga atacttcaac cagattgacg      1500
     gtgtcgcaat gggaagccca ttagctcctg ttattgccaa tctgtttatg gaatactttg      1560
     agaacatcgc catagacacg gctcctgcaa agcctagctg tttctatcgt tatgttgacg      1620
     atacgttcgt tgtctggccg catggacgtg aaaaactggg tgaattcttg gaccacatca      1680
     acagcatcca tgacaaaatc aatttcacga tggaggtaga gagagatggt gccctgccgt      1740
     tccttgacgt acttgtcagg cgcaaaacaa atggatgcct tagccatagt gtctaccgga      1800
     aacccaccca cacggacctg tatctgcacg ctacgagcca ccaccaccca tcgcaaaaac      1860
     gatctgctct aaggacgctg gtgcacagag cagaagtagt ctcggacaat gaacatctgc      1920
     agaaggaact gagccactta cggaaagtgt ttaagaaaaa tggctacagc aaccgccaga      1980
     taacacaagc cctccatccg aagacacgca agcaggagac cgtcgaggag gagacaaaga      2040
     agcttgcatt tttgccgttt tgtggctcgg taacgggaaa gattagccgg cttcttaaga      2100
     gacacgagat cgacacggtc ttcaggcctc ctacaaaatt gcgacagatg atgagacctg      2160
     tgaaagatga tctaggcctt agaacgccag gtgtgtacaa gataccgtgt gggtgtggac      2220
     agttctacat cggacagaca gtgcgcaata ttgaacagcg ctgtgttgaa catgaaagat      2280
     gtttccgcct acgttatccc gagaaatcag caattgcgga gcacgctcta gaaaacaaac      2340
     atcgcattgc gttcgaggat acatcagtca ttaccagaac aaatactttc tgggatagcg      2400
     taataaaaga ggctatcgaa atcaaaatat ctgaaaaatc tcttaataaa gacggcggct      2460
     tgcagctgag cacagcttgg gacccggcca tcggacggtt gaagcgggcg cggcaggcac      2520
     gcggccaaaa cattgccata tatggcgatg cggctgagca ccagtgacgt cacaggaggc      2580
     cgcgcaggta tataaggacg gcggcagcaa tgataagaca gtcaccactt gacaatggcc      2640
     gaggagattt cggccgaaag ctcgtggata tcaaaccact tgacgcggct ggaagcccga      2700
     gagaatttta tca                                                         2713
//
ID   Penelope-4_SIn repbase;    DNA;    INV; 3353 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-4_SIn.
XX
NM   Penelope-4_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3353
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 488-488 (2014).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. ~510bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           642..2567
FT                 /product="Penelope-4_SIn_1p"
FT                 /translation="MLLQLGENFSLPLTDRNKIILTYIKNFESNLEKINPS
FT                 LHLDTRNSAIPIFNNLLSFPQKKNDNNDRLNFLTKSTVNFIRKNPQIVFTR
FT                 ADKGNITVALDSQAYKEKMLGMLQDQNTYEIVKKDPTNXMTKNVRGLLTRR
FT                 KDRSFITPSTYKKIFCSDGNLPRAYGLPKIHKPGCPLRXIISSIDSPMYAL
FT                 ATYLHKIISDNTPDAFSKVENSFQLIEKLKGEKLXADHVLISLDVVSLFTN
FT                 IPVELALNSLSNRWQHLESKCNIPKHEFLQAVELVLNSTFFTFDNNFYKQK
FT                 FGTPMGSPLSPVIADLVMQDLETKALKKIGIRLPFYFRYVDDIVTAVPKNL
FT                 IDFTLSTFNSFHSRLQFTMEIGGETINFLDVTISKANTRLEFDWYHKPTFS
FT                 GRYLNFLSAHPLSQKRGTIMGMVDRAFLLSNPKFHKKNLELIINILLHNDY
FT                 PVKFIFETINSRLKSLIYKHTHKKPESTNDSTVREKTPWFLLPYIPNISEK
FT                 FLSITKNLNVKPAFFSLNKLNRFIKGQKDALPTSSMKNVVYKIACKECDAS
FT                 YVGQTSRKLKTRITEHRNNINWNNRNPSVITEHRIEFNHEFEWENIKILDS
FT                 ERFLGKRLVSEMLHIQMQKNGLNSQSDTEYLHHAYLSLLKRLRS"
XX
SQ   Sequence 3353 BP; 1069 A; 691 C; 570 G; 1013 T; 10 other;
     gttcttactc taagatcgca atctctttaa cagagaaaga tacgcatgat gtaaatattc        60
     ggtatccgat tgtgagttca agccattctt ttgcatctga atgtgcaaca tttcggacac       120
     tagtcgcttt ccaaggaaac gttcagaatc aagaattttg atgttctccc attcgaactc       180
     atgattaaac tctatacggt gttcagtaat tacggagggg ttcctattgt tccaattaat       240
     gttgttgcga tgttccgtta ttcttgtttt cagtttcctg tttgtctggc caacgtatga       300
     agcatcgcat tctttacaag cgattttgta tacaacattt ttcatagagc tcgttgggag       360
     atcatccttc tgtcctttaa taaacctgtt taatttgttg agactaaaaa aggccggttt       420
     tacatttaga ttcttcgtga tggatagaaa ttttatatta ctattcggat aacaacaacg       480
     aaccagcatt ttcaaacagt ggcatctctc gtgagcacaa acttgaaatc aaggtcaacc       540
     ctaaggagtt tgccaacgaa ccaatcaaat catccataca tgaaactcga gataaatggt       600
     ttataaattt atcgtcgact cacatcccaa cggaagtcaa aatgttattg caactcgggg       660
     aaaacttttc gttacctcta acagacagaa acaaaataat tcttacatac atcaagaatt       720
     tcgaaagcaa tctagaaaaa attaacccgt cattacattt agacacgaga aattctgcga       780
     taccaatttt taacaatctc ttgtcctttc cgcaaaagaa gaatgacaac aatgacagat       840
     tgaacttttt aacaaaatcc acagttaatt tcatccggaa gaatccccag attgtgttca       900
     cgagagctga caagggtaac atcactgtag ccttggacag ccaggcatat aaggaaaaaa       960
     tgctggggat gctacaagac caaaacacct acgaaattgt taaaaaggat ccaactaata      1020
     ncatgactaa gaatgttcgc ggactgctaa cgagacggaa agatcggagc tttatcacgc      1080
     cgtcaacata taaaaagatt ttttgcagtg acggcaacct cccgagagcg tacggccttc      1140
     ccaaaattca caaaccggga tgtcccctga gantaataat atcttcaatt gacagtccca      1200
     tgtacgctct agcaacatat ctacacaaaa ttatatccga caatactcca gatgccttca      1260
     gcaaggttga gaacagtttc cagctaatcg aaaagctaaa gggtgaaaag ttggangctg      1320
     atcacgtttt aatttctcta gacgttgtat cactattcac gaacatcccn gtcgagttgg      1380
     cactaaacag tctctcaaat agatggcaac atcttgaaag taaatgtaac attcctaagc      1440
     acgaattctt acaagcggta gaactggtgc ttaactcgac attttttacc tttgacaata      1500
     acttttataa acaaaaattc ggcacgccaa tggggtcccc tctctcccct gtaatagccg      1560
     atttagtgat gcaagatctg gagaccaagg ccctgaagaa aatcggaata cgtttaccgt      1620
     tctacttcag atatgttgac gatattgtga cagctgtccc gaagaattta attgatttta      1680
     ccttatcgac cttcaactca tttcactccc gtcttcaatt cacaatggaa atagggggag      1740
     agactatcaa cttcttagat gttactatta gcaaggcgaa cacacgttta gaatttgact      1800
     ggtatcacaa gcctactttt tcaggtagat accttaattt tctctcggca cacccactgt      1860
     cacaaaaaag agggacaatt atgggaatgg ttgacagagc attcttatta tcgaacccta      1920
     aattccataa aaagaacctc gagcttatca ttaatatact gttacataat gactaccctg      1980
     taaagtttat ctttgagact attaacagcc ggttgaaatc actgatttat aaacacacac      2040
     acaaaaaacc agagagcacg aatgattcca ctgtaagaga aaaaactccg tggttcttat      2100
     taccatacat tcccaatatt tccgaaaaat ttctatccat cacgaagaat ctaaatgtaa      2160
     aaccggcctt ttttagtctc aacaaattaa acaggtttat taaaggacag aaggatgctc      2220
     tcccaacgag ttctatgaaa aatgttgtat acaaaatcgc ttgtaaagaa tgcgatgctt      2280
     catacgttgg ccagacaagc aggaaactga aaacaagaat aacggaacat cgcaacaaca      2340
     ttaattggaa caataggaac ccctccgtaa ttactgaaca ccgtatagag tttaatcatg      2400
     agttcgaatg ggagaacatc aaaatccttg attctgaacg tttccttgga aagcgactag      2460
     tgtccgaaat gttgcacatt cagatgcaaa agaatggctt gaactcacaa tcggataccg      2520
     aatatttaca tcatgcgtat ctttctctgt taaagagatt gcgatcttag agtaagaacc      2580
     ttttacgtgt ccgtttactt actcaattat ttatgtattt aatttatcta tgtattttta      2640
     tgatccgact ctttngtatt ttttaaatan ttatgtatta atttatctac tcaacggaca      2700
     cattttcttc acggcggaat cacgtactta tgtttatatt ctccacgact tatacttatt      2760
     gttttgagtt gctcgtctat atcttattga atnaatgtat ctccgacctg ctttatgtac      2820
     gcttaacgac cagtcgattg ggaaccgctc gattggaaac atcttgtact gactgcggcc      2880
     ttccctaatt ccgttcgata attactattg tcaaacgcct tatccatggc ttcgcgagtc      2940
     gtcgtcgatt tttaatggta agtcactcaa atctacaact ctttaaagtt actattacat      3000
     aacatcaatt atagggtgat caaaacttcc cccatatcac gttnaaataa ttttcacttc      3060
     ggaatcggca aaccggtagt gacaaccaca tggaatcggc gatggctgga gcactgattc      3120
     gttaagagga tacgatcgct tacgaatttc cgatttatgt attcaaaatt ttttgctgat      3180
     gatgactcca aagagagtcg aaacgttcaa agattaatgt cgatcgatta aatgattctc      3240
     agtctataaa tgactattta tttccgcgca aaatcaaccg cgctgcactc tcattagccc      3300
     tnctctttat attatatttt ttatattttn gttcgagagt ctttattata tta             3353
//
ID   Penelope-4_TrVa repbase;    DNA;    INV; 1605 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-4_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-1605
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 629-629 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1355
FT                 /product="Penelope-4_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="KIVGKLDSHVKNSFEFFTFINGAEIPDGFKLISFDVK
FT                 SMYTNISVELAMECVQARWSEIENHCKIPQEHFCHMLKTCISSTVFQYEDS
FT                 FYQQIGGLAMGGSISAVLANIVMEHIELLFLSTTPYLIYFYKRYVDDLFLC
FT                 VKEDEILPILEFFNTFNPLIQFTSEIEENGCLNFLDMSLLRVNNKVLCKWY
FT                 QKPTSSGRYANFLSVQPTSIKKNVAMNLARRIICLSDKSFHLEMICKGKQL
FT                 LIENCYPHAFVNKIFKSVLRVHNNVNVNLNHSDISQHSEQIEHRVCLEKLV
FT                 CIPYVPFLSENISAFLKHFNYQVVNTRYNTLQCLMSKLKAKTPKLQQSGVV
FT                 YKIPCSNCDLSYIGQTKQHLFNRLNGHKYDKKEVTALHKHQREEDHTFNFE
FT                 EVEILCREKRDFPRLLLEMIEIIKHEGSVCNSRGDVQKLAPSYHAFFNSRT
FT                 LPGGDV"
XX
SQ   Sequence 1605 BP; 459 A; 281 C; 304 G; 561 T; 0 other;
     ctaaaattgt gggaaaactc gattctcatg tcaaaaattc gtttgagttc tttacgttta        60
     ttaacggcgc agaaatacct gatgggttta agctcatctc ttttgatgtc aaaagcatgt       120
     acactaacat ctctgtggaa ttagccatgg aatgtgtgca agctagatgg agtgaaattg       180
     aaaatcattg taaaatcccc caagaacatt tttgccatat gttaaaaact tgcatttcct       240
     caacggtttt tcagtatgag gattcttttt accaacaaat aggtggtttg gccatgggag       300
     gaagtatatc tgccgttctt gctaacatcg ttatggaaca cattgagctt ctttttctca       360
     gtacaactcc gtatctcatt tatttttata agagatatgt agatgatttg tttttatgcg       420
     ttaaagagga tgagattttg cccattctgg aattttttaa cacgtttaat cccctcatac       480
     agtttaccag cgaaatcgag gaaaatggct gcctcaattt tttggacatg tcactattaa       540
     gagtgaataa caaggtattg tgcaaatggt atcaaaaacc tacgtcatcg ggccgctatg       600
     ccaatttctt gtctgttcaa cctacaagca tcaaaaagaa tgttgcgatg aatttagcgc       660
     gccgtatcat ctgtttatct gacaaatctt ttcatcttga aatgatttgt aaaggtaaac       720
     agcttcttat tgaaaattgc tatccacatg cctttgttaa taaaattttt aaaagtgttt       780
     tgcgcgtcca taataatgtg aatgttaatt tgaaccacag tgatatttct cagcactccg       840
     aacaaattga acatcgtgtt tgtttggaaa aattggtgtg tattccgtat gttccttttt       900
     tgtccgaaaa tatttcagct tttctcaaac attttaatta tcaggttgtc aatacgaggt       960
     ataacacttt acaatgctta atgtcaaaac ttaaggctaa gactcccaaa cttcaacaat      1020
     cgggagttgt ttataaaata ccgtgtagta attgcgacct tagctatata ggtcagacaa      1080
     aacaacactt atttaatcgt ctgaatggtc ataaatatga taaaaaggaa gtgactgccc      1140
     ttcacaaaca ccagagggag gaagatcaca cctttaattt tgaggaagtt gaaattttat      1200
     gtcgggaaaa aagggatttt cctcgtttac tgcttgaaat gattgagatt atcaagcatg      1260
     aagggagcgt ttgtaattcg cggggagacg ttcaaaaatt agcgccttct taccatgcgt      1320
     ttttcaacag ccgcacgctg cctggtggcg atgtgtaata ctacactgtt gtcattggtg      1380
     gtcggtggtt gttgctcatc gatttgtctc tgtttgaggt tatcctcatg tttattttaa      1440
     tttatttgtc atgtcacggt ccagtatgta gcagttagta ctttaattcc tttctttctt      1500
     ctttttttat tatttaccac tgaagaaggc cagcgtttgc ggccgaaacg tttggttttt      1560
     attaatgttt tttagccttg ttcccactct ttaaacagtg attat                      1605
//
ID   Penelope-50_LMi repbase;    DNA;    INV; 3272 BP.
XX
AC   .
XX
DT   07-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-50_LMi.
XX
NM   Penelope-50_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3272
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3458-3458 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(342..2564,2528..2755)
FT                 /product="Penelope-50_LMi_1p"
FT                 /translation="MTLIEKIEHRTFTVMKHLKNKHEQKIIRLKTKMTQAH
FT                 IYIWNDNPEQHQHTFHPRLVNLTDTELHPKEKMLLEKGLKHCTNSRLDKKY
FT                 VENLIVESEYILTCEEQQNNSEINIGLARELVKKEIKNIIKQTQHEQNKNN
FT                 QSDTDTMKSLKQKLTSNNIVVTKADKGNATVLMDKEQYITKTKEYIKANNI
FT                 ITLKSDPTTRFQANVKKTLKSIQNILTDKQKYHITQKNPQAPTLRSQPKIH
FT                 KQQIPLRPVINFRNAPTYHIAKHLQKIISKHYKIENDKTVKNTCNLIEQIQ
FT                 NIQIPHTASLVSFDIENMYTSIPIKETIEIIQQNLTAHSNLTTEAISEITS
FT                 LLKLTTEQNYFQFENEYYLQGEGLPMGSPVSGTLANIFISHLENQILEKVE
FT                 ADGRFKVIYWHRYVDDIICLIDEPNEKIDELHSEINKAHKNIKFTVEKEND
FT                 SKINFLDITIEKENGKHSFNIYRKPTATDMIIHSTSNHPQNQKLAAFRHML
FT                 HRLNRIPLSKKNYQKEMNTIIQIARNNGYDTQIIQKLNQKIKRQIRNKHNI
FT                 SNKTNKQQNTQHPNTQPQTTNTHNDNTTQQQTKWYTMTYTHKLTHRVTNIL
FT                 KKQGLHIAYKTAQSLQTNLQPKIKKDIFQGSGIYKLECQSCDAEYIGMTNR
FT                 DFKTRYKEHIRCWKYETNHSTFAEHLKHHHHHPTNIDQDMKIIRTNNHNKH
FT                 LIQTQENYHIQKAIAENKQVINEQTNINENSLLNLVKDMRQKLTAKSSQRH
FT                 ETVIKEKKELHTHTHTTQNLIIIMRREKNTLSLPFPPSPSPPVSLYLFSLS
FT                 LLSLSLSLSTFTQES"
XX
SQ   Sequence 3272 BP; 1480 A; 738 C; 416 G; 638 T; 0 other;
     atacagcact gtggaaaagc agacaaaaga actaacatgt tactacagcc tgtcaagcat        60
     tcccgcccga gtacaacagg ttagaatatt catctaagac tccacaaaac aatacagcac       120
     attaaattca acaaaactgc aagattaaca acttaattcc aaattacatt atgtaaaggt       180
     taaaaacagt tctgcagtgg cacaaaaatc aaaattgtat gctgaaagat attggcttct       240
     acacgaaatc aagaggttat actctaaaaa acaatacctg aacatgatac ttttgaaacc       300
     cacttagagc tagcacataa cataggaatg ccactgtcct tatgacacta atagaaaaaa       360
     ttgaacacag aacattcacg gtaatgaaac acttaaaaaa taaacatgaa cagaaaataa       420
     taagattaaa aaccaagatg acacaggcac atatttacat ttggaatgat aatccagaac       480
     aacaccaaca cacatttcac ccacgtttag taaatctcac tgacacagaa ttgcacccca       540
     aagaaaaaat gctgttagaa aaaggtttga aacattgcac caatagcaga ttagacaaaa       600
     agtacgtaga aaatctcatt gtagaaagtg aatatatcct cacatgtgaa gaacaacaga       660
     acaacagtga aataaacata gggctcgcta gagaattggt aaagaaagaa ataaaaaaca       720
     taataaaaca aacacaacat gaacaaaaca aaaacaacca gtcagacaca gacaccatga       780
     aatcactgaa acagaagtta acatctaaca acattgtagt aacaaaagca gacaaaggaa       840
     atgcaacagt actgatggac aaagaacaat acatcactaa aactaaagaa tatataaaag       900
     ccaacaacat aataacattg aaatcagacc caaccacacg attccaggca aatgtaaaga       960
     aaactctaaa aagcatccaa aatatactca ctgacaaaca gaaatatcac ataacacaga      1020
     agaacccaca agcaccaaca ctccgcagcc aacctaaaat acataaacag cagatccctc      1080
     taagaccggt tataaatttc aggaatgccc caacatacca catagccaaa cacctccaaa      1140
     aaataatctc aaaacactac aaaatagaaa atgacaagac agtgaaaaac acatgtaacc      1200
     taattgaaca gatacagaac atacagatac cacacacagc atcactggtc tcatttgaca      1260
     tagaaaatat gtacacatcc atccccatca aagaaacaat agaaatcata caacaaaatc      1320
     tgacagccca cagcaacctc actacggaag caatatcgga aataacaagt ttgctcaaac      1380
     taactaccga acaaaattac ttccagttcg agaacgaata ctacctacag ggtgagggac      1440
     tacctatggg ttccccagta tcaggaacct tagctaacat tttcatcagt cacttagaaa      1500
     accagatact tgaaaaggta gaggcagatg gaagatttaa agtcatatat tggcacagat      1560
     acgtagatga catcatatgt ctgatagatg agccaaatga aaaaatagat gaacttcact      1620
     ctgaaataaa caaagctcac aaaaacatta aattcacagt tgaaaaagaa aatgacagca      1680
     aaataaattt ccttgatata acaatagaaa aagaaaatgg taaacattca ttcaacattt      1740
     atcgtaaacc aacagcaaca gacatgatta tacattccac ctccaatcat ccccaaaacc      1800
     agaaacttgc tgcatttaga cacatgttac ataggctaaa cagaatccct ctcagcaaga      1860
     aaaactatca aaaagaaatg aacacaatca tacaaatagc aaggaacaat ggttacgaca      1920
     cacaaataat acaaaaactc aatcagaaaa ttaaaagaca aatacggaac aaacacaaca      1980
     tttcaaacaa aaccaacaaa cagcaaaata cacaacaccc aaacacacaa ccacaaacaa      2040
     caaacacaca caatgacaac accacacagc aacaaaccaa atggtacacc atgacataca      2100
     cacacaaact aacacacaga gtgacaaaca tactgaagaa acaaggactc cacatagcat      2160
     acaaaactgc ccaatcccta caaacaaatc tacaaccaaa aatcaagaaa gatatattcc      2220
     aaggatcagg gatatacaaa cttgaatgcc aaagttgtga tgccgagtac ataggaatga      2280
     caaacagaga tttcaaaaca cgatacaaag aacacatcag atgttggaaa tatgaaacaa      2340
     accactccac atttgccgaa cacttaaaac accaccacca tcacccaacc aatatagacc      2400
     aagacatgaa aattatcagg accaacaacc acaacaaaca cctcatacaa acacaagaaa      2460
     actaccatat ccagaaagcc atagccgaga acaaacaagt aataaatgaa cagacaaaca      2520
     ttaatgaaaa ctcactgcta aatctagtca aagacatgag acagtaatta aagagaaaaa      2580
     agaattgcac acacacacac acacaacaca aaatttaata ataataatga gaagggaaaa      2640
     aaacacactc tctctccctt tcccaccatc cccgtctcct cctgtctctc tctatctctt      2700
     ctctctctct ctcctctctc tctctctctc tctctccacc ttcacacagg agtcataaat      2760
     aaataataat atacatcagt atctggtgca gttctctatg caatcacatc gaaacacaca      2820
     cacactgaca taaagcaaag ataggacaaa cacatactca acagttggca acaccaacca      2880
     aaacaaaaac acaacacaaa caaaatggca tgtgcctagt ggtgctagct gtgaagtgct      2940
     ggaataacaa aaaacgcaaa atgaacataa ctgaagcaga acagccggaa gccaccaatg      3000
     agcactagat gtaaagcaat atccacgaaa tattgtaagt tacaacatcc aaatatcagt      3060
     aactatactt aaataacgca ccagaactgt ttataaccta aaatactaag aaacgtaaat      3120
     atgaaatatt gtaaaacata atcatgtata tattacaggc cactgatgat gccttccaaa      3180
     taaaggcgaa atgcatatgg caataaaata ttttattaaa tcagttgcat agacggataa      3240
     cctaaatacc tacactataa taataaatta ca                                    3272
//
ID   Penelope-51_LMi repbase;    DNA;    INV; 3029 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 19.12, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-51_LMi.
XX
NM   Penelope-51_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3029
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3459-3459 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(457..1086,1020..2273)
FT                 /product="Penelope-51_LMi_1p"
FT                 /translation="MKQNTGNQSNTDSTTLTKLKKKLQQNNTIITRADKGN
FT                 TVILMDKDQYISKTQDFITKNKITKLKSDPTNRFQTKLRNTLKSIEYTLED
FT                 NEIRKLIQANPSAPFLRSQPKLHKKDLPVRVIVNYRNAPTYPLARHMLKII
FT                 TENYKLENDRTIRNTTQLIQHIKDIQVPESATLLSFDVENMYTNIPVTETI
FT                 NIIEKTYRPTAPFHWNTSQKNNKYHRKNLQTHSTLPLEYITEIIKLLELIT
FT                 EQNYFQFNNEFYLQSEGLPMGSPISGTIANIFMNHIEQVIFNKIVPNRYKI
FT                 LYWIRYMDDILCLVDEXSSKIDQLYTDINSVHDKIQFTVEKEQNRQLNFLD
FT                 VTIKIQNNQHTFDIFRKPTTTDTIIHHTSNHPDTQKHAALRYMLHRLNTIP
FT                 LDTDNYQKEMNTIVQIATNNGYKENLVTKLNNKIKKQINTPIPPPQRQNTT
FT                 QTNTQDTHTRTTQRQKNEENNRWYTMTYNHKYTHRISNIFKKQGIKIAHQT
FT                 NNSLQKYFPKSIENTDPYRKSGIYQLKCNTCDGRYIGQTKRTFDTRYKEHV
FT                 RAWKYKTSHSTFAEHLHQNQHKITTRDTDMEILRINNNKKHLLTLQENYHI
FT                 QKTITEKKHLINDQTNLANNTLFKLIDHLT"
XX
SQ   Sequence 3029 BP; 1354 A; 679 C; 384 G; 611 T; 1 other;
     gctaaataga aataaagtta ctttatgcca aaaagaaacc ctaaatactg agttatataa        60
     agtgacctca atctgacaaa gttctcaata atactgctgt tttctcccaa cttgttggta       120
     gggttgaaag tcgaacaaat aaagtggtag aaaaaataag aaaagttcac gaagttaaaa       180
     tcaaaacagt ccctaacaca cacgcaaaat acaacgattc caagagaaac atcacttcat       240
     caagactgat aaaccttaca gacactgtgt tagaaacaaa aataaacttt tagagaaagg       300
     cctgaaacaa catcagcaca aatataacga aactatataa aaacctgata gtagaatcag       360
     aaaacatcct cctacaaaaa acaaaaacga atcaatgaag taaacattgg tcttactaga       420
     gagcttgtaa gtaatgaaat caaaaacata acacatatga aacaaaatac aggaaaccaa       480
     agtaacacag attccactac actgacaaaa ctgaaaaaga aactacaaca aaacaacacc       540
     atcattacaa gagcagataa aggaaacaca gtaattctga tggacaaaga ccagtacatc       600
     agtaagacac aagacttcat cacaaaaaat aaaattacaa aactaaagtc agacccaaca       660
     aacagattcc agacgaagtt aagaaacaca ctgaaaagca tagaatacac actcgaagac       720
     aatgagataa gaaaactaat acaggcaaat cccagtgcac ctttcctccg aagccaacca       780
     aagctacata agaaagatct ccctgtcaga gttattgtga actacagaaa tgctcccaca       840
     tacccacttg ctagacacat gttaaaaata ataacagaaa actacaaatt agaaaatgat       900
     aggaccataa gaaacaccac acaactgatt cagcatataa aagacataca ggtcccagaa       960
     tcagccaccc ttctctcatt tgatgtggaa aacatgtata ctaatatccc agtaactgaa      1020
     acaataaata tcatagaaaa aacctacaga cccacagcac ccttccactg gaatacatca      1080
     cagaaataat aaaactttta gaactaataa cagaacagaa ctatttccag ttcaataatg      1140
     aattctattt acaaagtgaa ggattaccaa tgggctcccc aatttcaggt actattgcaa      1200
     atatctttat gaaccacata gaacaggtca tatttaacaa aatagtccca aacaggtaca      1260
     agatcctata ctggattaga tatatggatg acatcttatg cctcgtagat gaamcaagct      1320
     caaaaataga ccagttgtat actgacataa attctgttca tgacaagata caattcacag      1380
     tagaaaaaga gcaaaacaga cagttaaatt tcttagatgt caccataaag attcagaaca      1440
     accagcatac atttgacata ttcaggaaac caacaacaac agacacaatt atacaccaca      1500
     catctaatca cccagataca cagaaacatg cagcacttag atacatgctc cacagactaa      1560
     acaccatccc actagacaca gataactacc agaaagaaat gaataccata gtacaaatag      1620
     ccacaaacaa tggatacaaa gaaaacctag taacaaagct gaacaataaa attaaaaaac      1680
     aaataaacac accaatacca ccaccacaaa ggcagaatac cacacaaaca aacacacaag      1740
     acacacacac aagaacaaca caaaggcaga aaaatgaaga aaacaacaga tggtatacaa      1800
     tgacatacaa tcacaaatac acacacagaa tatccaacat tttcaaaaaa caaggcatca      1860
     aaatagccca ccaaaccaac aactcacttc aaaaatattt tccaaaatca atagaaaata      1920
     cagatccata cagaaaatca ggaatatacc aactgaaatg caacacatgt gatggaagat      1980
     acattggtca gactaaaaga acatttgaca ccagatataa agaacatgta cgagcctgga      2040
     agtataaaac aagtcactca acatttgcag aacacttaca ccaaaaccaa cataaaatca      2100
     ccaccagaga cacagacatg gaaatcttaa gaataaacaa caacaaaaaa cacctgctca      2160
     cccttcaaga aaactaccat atccaaaaaa caataacaga aaagaaacat ctcataaatg      2220
     accaaaccaa tctagcaaac aacacacttt tcaagcttat tgaccaccta acataaatat      2280
     aaacactatg agagtcaacc ccccctttca taaaaacaca aatcgcgata ccctcacccc      2340
     ccccaccacc acaacccaat taaacctgca tttactcatc tgaaaaaaca tcttaacacc      2400
     ctgttcacga aattaaatat tctctctctc tctcctctct ctctctctct ctctctctct      2460
     cacacacaca cacacacaca caccatgttg aattaagtcg tatttatatt ataaatatat      2520
     aacgttggca acactcacag accacacgaa aaacaaatga acagacaaaa acatagccac      2580
     actgtagtga agtgataaac aaacagaaag gcattccact taaacaggtg atatgcaatc      2640
     tgtatgcatt tcaaaaagtg aagtgatgtg atgtgctgga tgaaaaggaa aaaaacgaaa      2700
     caaaaacaca cgaaaagtgc tgtacacagc cgaaacacac gccaggaaca aaccaactcc      2760
     agccaacaag acggagaaac agcagtgaga tgtaaagaag agacacaaca ccgtgagtag      2820
     accgaatatt aagttaaaaa cacataggcc taacgtgcaa agttttttaa aaactgtttt      2880
     taatctattt atcgaaaaca aactgtacaa acctttgtat catttacaga ccacagaaga      2940
     tgcttttaaa ataaaaaagc gaaacgcgtc tggtgtaaaa taaatctctt aattgcagtc      3000
     agcataagac ggattacctc ttataatca                                        3029
//
ID   Penelope-53_LMi repbase;    DNA;    INV; 2077 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-53_LMi.
XX
NM   Penelope-53_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2077
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 222-222 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(22..1023,788..1264,1249..1398,1382..1657)
FT                 /product="Penelope-53_LMi_1p"
FT                 /translation="TYNTNKKHIPQTATLISFDIESMYTSIPTTDTVKLIE
FT                 DNLMAHNKLPAENVREITKTLKVVISQNYFEFEKEFYLQKDGLPMGSPISG
FT                 TLANIFINHIENIIFNTIITEKKYKIVYWYRFVDDIICMVDESAERIQQLH
FT                 TDINSIHSNIQFTMEKETNRQIHFLDITIKRNNDKHTFDIFRKPTATDTII
FT                 HATSNHPHNQKLAALRHMLHRLNNVPLSKENYEKELKTIQLIAKNNGYNTQ
FT                 TVERLNQKIKTQLMKNSKKHKVQTPKTLTNTDKATHTDTQNTNTHDTISKN
FT                 KWYTLYIQTQINTQNSKHTKEARFTNCLQNKKHTSVTVANNRKIPRSTKYK
FT                 HPKLSQTQTRQHTQTHKTPTLMTQSAKINGTPYTYKHKSTHKIANILKKQG
FT                 LQIAYRTRNTLLSQLQTTDKPDKYEGAGIYQLECQECKSVYLGMTGRNFKT
FT                 RYKEHIRSWKYENSHSTFAEHLIEHGHEPSNMEQDMKIIRTNNRDRKSSRQ
FT                 KILTLQENFHIQRALAMNKKVINDQINISNNSLIKLATKTVKNSNETKTVM
FT                 KHEMPXLLLPLLPSPHSLTLPYHKKLTQITTHTTHTHTHTVYTDTNTNKKQ
FT                 LIHSEIQGTQTRDRRKATVGNTKHCKQTFKNEYTVKW"
XX
SQ   Sequence 2077 BP; 927 A; 474 C; 283 G; 392 T; 1 other;
     gaacagtgaa aaaacaaatg aacttataac acaaataaaa aacacattcc acaaacagca        60
     acactcatct cttttgacat agaaagcatg tatacctcaa tacccaccac agatacagta       120
     aaactaattg aagataacct aatggctcac aacaaactac ctgcagagaa tgttagagaa       180
     ataaccaaaa ctcttaaggt agtcatatcc caaaactact ttgaatttga aaaagaattt       240
     tacctacaaa aagacggact accaatggga tcccctatat caggaacact ggcaaatatc       300
     ttcatcaacc acatagagaa tataatattt aacacaatca ttacagagaa aaaatacaaa       360
     attgtctact ggtacagatt tgtagatgac ataatctgta tggtagatga atcagcagag       420
     agaatacaac agctccacac agacataaac agtatacaca gcaacattca attcacaatg       480
     gagaaagaaa caaacagaca gatacacttc ttggacataa caataaagag aaacaatgat       540
     aagcacacat ttgacatctt cagaaaacca acagcaacag acacaatcat acatgccact       600
     tccaaccacc cccataatca aaaactagca gctctaagac acatgttaca tagactgaac       660
     aatgtcccac taagcaagga aaactatgag aaagaattga aaacaataca acttatagct       720
     aaaaacaatg gctataacac ccaaacagta gaaagactca accaaaaaat caaaacacaa       780
     ctaatgaaaa attccaagaa gcacaaagta caaacaccca aaactctcac aaacacagac       840
     aaggcaacac acacagacac acaaaacacc aacactcatg acacaatcag caaaaataaa       900
     tggtacaccc tatacataca aacacaaatc aacacacaaa atagcaaaca tactaaagaa       960
     gcaaggttta caaattgcct acagaacaag aaacacactt ctgtcacagt tgcaaacaac      1020
     agataaacca gacaaatatg aaggggcagg tatataccag ctagaatgcc aagaatgtaa      1080
     atcagtatat ctgggaatga caggcagaaa cttcaaaacc agatataaag aacatataag      1140
     aagctggaag tatgaaaata gccactccac ctttgcagaa cacctgatag aacacggaca      1200
     tgaaccatcc aacatggaac aagatatgaa aattatcaga accaataatc gagacagaaa      1260
     atcctgacac tacaagaaaa ctttcatata cagagagccc tggcaatgaa taagaaagtg      1320
     atcaatgatc agatcaacat aagcaacaac tcactgatca agctggccac aaaaacagtg      1380
     aaaaacagta atgaaacatg aaatgccctm cctccttctc cctctcctcc cctcccccca      1440
     ctccctcaca ctcccatatc acaaaaaact aacacaaata acaacacaca caacacacac      1500
     acacacacac acagtctaca cagacaccaa cacaaacaaa aaacagctga tacactcaga      1560
     gatacaagga acacaaacaa gagacagacg aaaagcgaca gttggcaaca ctaaacattg      1620
     taaacaaacg ttcaaaaacg agtacacagt gaagtggtga tgcaagggtt ttcatcaaga      1680
     ccgaaaatac cacatccaac tgaagacctc acaaacatct ccatgaagac acacatggaa      1740
     taaaacagaa aaccgtaagt agggccaaaa actgtataat taaattaact ttgcaaaagc      1800
     tagtgctaca gaagttgttt ctaacctagt agatccgaac tttagtaatt gtaacaagac      1860
     tgttaactgt catactgtga aaaataccta taatattatg actgtactac aatattatac      1920
     aaaaataaca tgtattacag gccactgatg atgcttcata aataaagaag cgaaacgcgt      1980
     atggcacaca aaaaacgcct ttcatttagt tgctaaagac ggtaatacac ctccaccaat      2040
     ttcatatgca actaagggac ggaatcgaaa aaatgat                               2077
//
ID   Penelope-54_LMi repbase;    DNA;    INV; 1927 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-54_LMi.
XX
NM   Penelope-54_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1927
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 223-223 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1842
FT                 /product="Penelope-54_LMi_1p"
FT                 /translation="MGIPLRPIVSTIGAPTYQLAKHLTSVLSPQVGKCEHH
FT                 IKNSAQFVERIRQLRLSNSDLMVSFDVVSLFTRVPLKESLELIEKKFGPSF
FT                 TKVFNFVLTSTYFLFDGEYYEQTDGVPMGSPLSPVIANMYMEEFEDKALNT
FT                 APLKPTIFYRYVDDTFVIWPHGEDELQVFLQHLNSIHSQIQFTMEVEQNGQ
FT                 LPFLDVLVRRKPDGTLGHSVYRKETHTDQYLHASSCHHPSQREGVLTTLVH
FT                 RARVISDEESLKPELDHLKEVFQENGYSDRQIRRAFKHKSTPQPTPEEDPP
FT                 AKIAYIPYAGNVSGKIGRILRRQNIKCVYRPPAKIKSLLGTVKDDLGLRKS
FT                 GVYHIPCECGKAYIGQTIRTIEERCTEHKRHTELQQPTKSAIAEHCLETXH
FT                 KMKYEDTEVLHNTSRYWDCLYKEAIEIRLRENLINKDSGFQLSHAWNPALK
FT                 FLRSRRKQNTEHSEGRAQTEVRHSSPEQELPPPPQHPGVRTRGQWRGVTAG
FT                 IYSTAAGPAPQSAGVT"
XX
SQ   Sequence 1927 BP; 569 A; 520 C; 464 G; 373 T; 1 other;
     ccaggcacaa cattaccaga cgtgaaaggg cgcgctgcgg tcgctgcgtg atgatccaga        60
     cgtcgtcgtc ctgccggcgg ataaggggaa cataaccgtt ctgctaacag ctgcggaata       120
     caaggagaaa atgtataagc tcctagatga ccctgcttac aggaagatca cgacggatcc       180
     aaccagccga atacagcgca agacaattga acttcttcgg agtactttca cagacgaaac       240
     agctaagaaa ctccgtcctc gtgcggccgc accaccaaga ctctagggct tccaaaggta       300
     cacaagatgg gtatacctct gagaccgatt gtgagcacaa taggagcgcc aacgtaccaa       360
     cttgcgaagc acttgacgtc agttttgagt ccgcaggttg gcaaatgtga gcaccacatc       420
     aaaaactcgg ctcagttcgt ggaacggata cggcaactca gactgtccaa ctcagatctc       480
     atggtcagtt tcgatgttgt ctcccttttc accagggtac cactgaagga gtcgctggaa       540
     ctcatagaga agaaatttgg gccctccttc acaaaagtat ttaatttcgt gctcacgtcg       600
     acctattttc tctttgacgg agagtactac gaacagactg atggcgtgcc catgggcagt       660
     cccctgtcac ctgtgattgc caacatgtac atggaggaat ttgaggacaa ggcactaaac       720
     acagcgccac taaaaccgac gatattctac cgatatgtcg acgacacgtt cgtcatttgg       780
     cctcacggcg aagatgaact tcaggtgttc ttgcaacacc tgaattccat acacagccag       840
     atccagttca caatggaagt tgaacaaaac ggtcagctac ctttcttgga cgttctggtt       900
     cgcagaaaac cggacggaac gttgggacac agtgtctatc ggaaggaaac ccacacggac       960
     cagtacctcc atgcctctag ctgtcatcac ccgtcccaaa gagaaggggt tctaactacg      1020
     ctggtccaca gagctcgtgt gatctccgac gaagaaagcc tgaaaccaga acttgaccat      1080
     ctcaaggaag tattccagga aaacgggtat agcgatcgac aaatccgacg tgctttcaaa      1140
     cataagagca caccacagcc aacacccgag gaggatccgc cggcaaaaat tgcctacatt      1200
     ccatacgcag gcaacgtatc cggaaaaatc ggcagaatct tacgacgaca aaacatcaaa      1260
     tgcgtgtacc gcccgccggc aaagatcaaa tctcttctag ggacagtgaa ggacgatctg      1320
     ggactccgga aatcgggagt ttatcacatt ccatgcgagt gcgggaaagc gtacattggc      1380
     caaacaattc gaacaattga agaaaggtgc actgagcata agcgccacac cgaactccaa      1440
     cagcccacaa aatcagcaat tgctgaacat tgtctggaaa caamacacaa gatgaaatat      1500
     gaagacacag aggttctcca caatacatcg cggtactggg actgtctgta taaggaggcc      1560
     atcgaaatcc ggctacgcga gaacctcata aacaaggaca gtggatttca attaagccac      1620
     gcatggaatc cggcactaaa atttcttcga tcgcggcgca agcagaacac cgagcacagc      1680
     gaaggcagag cgcaaactga ggtccgccac tcgagtccag agcaggagct acccccacca      1740
     ccgcagcatc ccggtgtccg cactcgaggt cagtggaggg gggtgaccgc aggtatatat      1800
     agcacagccg ccggtccagc gcctcagtca gcgggagtaa cctgatgatg atggcacgtt      1860
     acgctatcga aaattcgttc cacaacgatc aatccatccg gctgcacgcc cgagagatct      1920
     tcactca                                                                1927
//
ID   Penelope-55_LMi repbase;    DNA;    INV; 2256 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-55_LMi.
XX
NM   Penelope-55_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2256
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 224-224 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           148..1821
FT                 /product="Penelope-55_LMi_1p"
FT                 /translation="RRHLVLINKQDYIQKVFEFFDKNGIIKIPCDPTNKYI
FT                 AQTRKIIKSCSSILSDKDKRKYIPMNPKTPQLRGHPKTHKELSPIRPVVDS
FT                 INCPTYLISKKLNTLLQKYYTYKKKYTIKNSRTLAANINKIDIPINGKFVS
FT                 FDIINLFTNIPVKETINIIELNLLSXNKLPINSTYEIINLLHLVLEQNYFK
FT                 FEDNFYTQPDGVAMGCNLASTIADIFLNTLEERFFLHQETNKIIYYYRYVD
FT                 DIIVLIDGNETDINNIHGLINKLHPKIKFTMELETNKTINHLDLTIQNVQN
FT                 KHRFEIYRKPTTTTNIIHAHSCHPSSHKLAFFHSMINRLINVPLDDAAKQK
FT                 EMTILQYIAQQNEYDPNIILKLYNNKTSPRPPTTRTEITLQRETSKLNKPI
FT                 YISTPYLGKISNKVQQIFRKTNTTFAFQNRHTLKHKFVTHTTKPSKFLNSG
FT                 IYKISCNSCNKYYIGQTGRNFTIRYKEHTRESEKNPSTFYQHLQSENHTVD
FT                 TIDNALEILHTVQKGYEMNILEEMEVCLHAIKNTNNLLNDQTDFKHKNYFD
FT                 NFIHILVHDNG"
XX
SQ   Sequence 2256 BP; 951 A; 411 C; 276 G; 616 T; 2 other;
     aaatcacagt aaaagtagct aatgctctag aaaataaatc taactacatg tatccaagac        60
     acacagaatt tttgtaatac agaacgatca actctaaaaa ataaaccaca agttaggcaa       120
     ataatgttat agaaataaag ctgataaagg aggcatctgg ttttaattaa caaacaagac       180
     tacatacaga aagtatttga atttttcgac aaaaatggta taataaaaat tccatgtgat       240
     cctaccaaca aatatatagc tcaaacaaga aagattatta aatcttgttc atcaatttta       300
     tcagacaaag ataaacgaaa atacatccca atgaacccta aaacaccaca attgagagga       360
     catcccaaga cacataaaga attatctcct attcggccag tggtggatag tataaattgt       420
     cccacttacc tgattagtaa aaaattaaat acactactgc aaaaatatta cacttataag       480
     aaaaaatata ccatcaaaaa ttccagaacc cttgcagcaa atataaataa aatagatatc       540
     cctattaatg gaaaatttgt ttcatttgac attatcaacc tatttacaaa tatccctgtc       600
     aaagaaacca ttaatataat agaacttaac ttactcagtm ataacaaact tccaattaac       660
     agtacatacg aaattataaa tctgctacac ctagtcttag aacaaaacta tttcaaattt       720
     gaagataatt tttatacaca accagatggt gttgcaatgg gttgtaacct agcaagcacc       780
     atagcagata tatttttaaa taccctcgaa gaacgttttt tcctacacca agaaacaaac       840
     aaaattatct attattatcg atatgtggac gacataatcg ttctcataga tggaaatgaa       900
     acagacataa ataatattca tggccttatc aataagctac accctaaaat taaatttact       960
     atggaactag aaaccaacaa aacgattaac catctggacc tcactataca aaatgtacaa      1020
     aataaacaca gatttgaaat atataggaaa ccaacaacaa cgaccaacat tatccacgct      1080
     cattcttgcc atcctagttc acataaatta gcattcttcc attcaatgat aaatagactt      1140
     ataaacgtac cattagatga tgcagccaag caaaaagaaa tgaccatact gcaatacatt      1200
     gcacaacaaa atgaatacga ccccaacatt attctaaagc tctataacaa caaaacgagt      1260
     cctagaccac caacaacacg tacagaaatt acattacaga gggaaacttc aaagctaaat      1320
     aaaccaattt acatcagtac accataccta ggtaaaatat ctaataaagt gcagcaaatt      1380
     tttagaaaga ctaacaccac ttttgcgttt cagaacagac acacccttaa acacaaattc      1440
     gtaacacata ccacaaaacc ttcaaaattt cttaactctg gaatttataa aatatcttgt      1500
     aattcatgta ataagtatta tataggacag actgggcgaa atttcactat aagatacaaa      1560
     gaacacacta gagaaagtga aaagaaccct tccacatttt atcaacattt gcagtccgaa      1620
     aatcacacag ttgacaccat agataatgca ctagaaattt tgcatactgt acagaaggga      1680
     tacgagatga atattcttga agaaatggaa gtatgcctac atgcaattaa aaacacaaat      1740
     aatttgctaa acgatcaaac ggatttcaag cacaaaaatt atttcgataa ttttattcat      1800
     attctagtgc atgacaacgg ataaacaatc ccactgccaa tcatagataa tagcgcaaca      1860
     aaattatcaa agataaaata tcccaacata tttcgttcaa ttttaaataa aagctttgcc      1920
     tcatagatat atattctctg tgcaaataat gtaagcatat tacatctctg tagagctgtc      1980
     aagtaaatgt caaaatccgt aacttgataa agatcttgca tgacagcaca atattataag      2040
     ttacgtgata tataatacaa cataacagaa tgtggtatgt agcatttctt ttacatctgt      2100
     ataaaacaag taggcagcat agtataaata ttatgaaaac ttatgtattg caggcataac      2160
     acctgaagat gactattaag tcgaaataag cttatmgtgt aactaatacg aattaaaata      2220
     tacagtgttg aaattatata attgttatta ttaaaa                                2256
//
ID   Penelope-56_LMi repbase;    DNA;    INV; 2197 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-56_LMi.
XX
NM   Penelope-56_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2197
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 225-225 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(394..576,554..1039,1021..2037)
FT                 /product="Penelope-56_LMi_1p"
FT                 /translation="QNLVASRFCRRSKYTFTLCLPRILPIFLESVSTNGTT
FT                 ACRTPRLRGLPRCTKVTSHCARQSRPIAPDSHNIGAATYGLAKHLTVLLSP
FT                 HVGKCKHHVRNSTHFVKHLQELHLQASDLLVSFDVVSLFTRVPLKDSLELI
FT                 SKIFDTNLTRLFEFVLTSTYFLFDGNYYEQTDGVAMGCPLSPVVANLFMES
FT                 FEEKALEQARLKPTCFYPTWTICLLSDLMDGTAPHGRDSLSEFLQHLNSLH
FT                 PNIQFTMEVEQDGALPFLDVLVKRKPDGNLGHSVYRKPTHTDLYLHASSSH
FT                 HESQREGVLRTLVHRARAICDEDSLPAELEHLEKTFRRNGYNNRQIKRAFR
FT                 QTVRRQQQEDEIEEYKSLACIPFVGNTSRKIGRILGRHNVKCVFRPPAKTL
FT                 TLLGSVKDDLGLRKPGVYQIPCQCGKSYIGETVRTVEERCREHKRHTEQRQ
FT                 YSKSAVADHSIRTGHTMDYENTRILKQSSSFWDCVIKEAIEIRVKDNLINK
FT                 DSGLQLSQAWNPALDLVKKKRPRPVTSAPDGDGASTGEASTAGGPLPPPPP
FT                 PAAALTTSAGEKWRG"
XX
SQ   Sequence 2197 BP; 592 A; 570 C; 543 G; 492 T; 0 other;
     gcagtgctgg cctctccagt acttgcgccg tcgccgtcgg gtgtggaggg ccggggacgc        60
     ttcttcttaa ctaggtccac agcaggatcc atgcctgact tagctgtagg ccactgtctt       120
     tacaactaaa ttatctctca ccctgatttc agtggctctt cgattagcaa tcccagaagg       180
     aggaggactg ctttaaattc tagtgtcctc ataatccaca gtacggccag ttcttataca       240
     tggtctgcca cggctatttc gagtactgac gttgttcgtg tggcgtttat gttcgcggca       300
     cctctcttta ccgtgcgtac gtttccccaa tgtatgactc cgcattgaag gggatttggt       360
     aaacgctgtt tcgaagtccc aaatcgtctt taacagaacc tagtagcgtc aaggttttgc       420
     cggaggtcga aatacacatt tacactgtgt ctccctagga tcctgccaat ttttctggag       480
     agtgtttcga cgaacgggac cacggcatgc cgcacgccgc gactacgtgg gctaccaagg       540
     tgcacaaaag taacgtccca ttgcgcccga cagtcataac ataggagcag caacatatgg       600
     actggccaaa catctgactg ttcttctgag cccccatgtg gggaaatgca agcaccacgt       660
     tcgcaattcg actcattttg taaagcattt acaagaactt cacctccagg ctagcgacct       720
     actagtaagt ttcgacgtag tgtcgctctt caccagggta ccactgaagg actcgttgga       780
     actgataagc aagatattcg acactaacct aacaaggctc tttgagtttg tactcacttc       840
     tacatatttc ctgtttgatg gaaattatta cgaacagaca gacggcgtcg ccatggggtg       900
     tcccctttcg ccagttgtgg cgaatttatt catggagagc ttcgaggaga aggccctgga       960
     acaagcgcgc ctaaaaccga cttgtttcta tcccacgtgg acgatatgtt tgttgtctga      1020
     cctcatggac gggacagctt aagcgagttt ctccaacacc taaactcgct gcaccccaac      1080
     atacagttca cgatggaggt ggaacaggac ggcgcccttc cgtttcttga cgtcctagtg      1140
     aaacggaaac ctgatggtaa cctgggacac agcgtgtaca ggaagcctac acacaccgat      1200
     ttgtaccttc acgcctctag cagccatcac gaatcccaac gtgaaggcgt tctacgcacg      1260
     ctagtccaca gggcacgagc aatctgtgac gaagacagtc tgccagctga gctggagcac      1320
     ctcgagaaga ccttcagaag aaatgggtac aacaacaggc agataaaacg tgcattcaga      1380
     cagactgttc ggaggcaaca gcaggaagat gaaatagaag agtacaaatc gctggcgtgc      1440
     atcccgttcg tcggaaacac ctccagaaaa attggcagga tcctagggag acacaatgtt      1500
     aaatgtgtat ttcgacctcc ggcaaaaacc ttgacgctac taggttctgt taaagacgat      1560
     ttgggacttc ggaaaccagg cgtttaccaa atcccctgtc aatgcggcaa gtcatacatt      1620
     ggggaaaccg tacgcacggt agaagagagg tgccgcgaac ataaacgcca cacagaacaa      1680
     cgccagtact cgaaatcagc cgtggcagac catagtataa gaactggcca tactatggat      1740
     tatgagaaca ctagaatttt aaagcagtcc tcctccttct gggattgcgt aatcaaagag      1800
     gccattgaaa tcagggtaaa agataattta attaataaag acagtggcct acagctaagt      1860
     caggcatgga atcctgctct ggacctagtt aagaagaagc gtccccggcc tgtgacctcc      1920
     gcacccgacg gcgacggcgc aagtactgga gaagccagca ctgcaggggg cccccttccc      1980
     ccaccaccgc ctccggcggc cgcgctgacc accagcgcag gggagaagtg gagggggtaa      2040
     cgcctatata tacgacactg acaggaagag cacggcattc gtcagggacc acctgaagat      2100
     ggcaacgtgt cggtttgccg aaatatcgtg gagaaattac gacatgaccc ggccgaacac      2160
     ccgagaactc tttaaattag aaatactagc tgggaaa                               2197
//
ID   Penelope-57_LMi repbase;    DNA;    INV; 2601 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-57_LMi.
XX
NM   Penelope-57_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2601
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 226-226 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(177..1004,917..2398)
FT                 /product="Penelope-57_LMi_1p"
FT                 /translation="MFRSAQAQRIYNRMETAMLRERIHQTRRELAETSSKL
FT                 LHLHLLISNTMRCWDWNKVDDLTFRTMEWSAEISANRQKKKFSGLQKDVSD
FT                 APADDNSRTVINLSDKNLTDVEISVLAKGGNFAVTPLKVPTEDIIANIEAG
FT                 IRQLPQQSADIIRMETARILRKCKPPKSNLSQEQRKALRDINADPNIIVLT
FT                 ADKGNASVVMKSEDYHSKIQDILDPTNYKELQKDPTMKILKTTNQLVKASS
FT                 FSSDDKKCFAKRKRIPLGSMDYLRCIKNRRRLGRLEVLCKTEAYPPRLYGL
FT                 PKVHKEQTPLRPIVSAIGSPTHELARHLASLLQPYIGGTDSHIKNSVHFIE
FT                 KLKEMNVAPSDILVSFDVVSLFTMIPVNEAISCIAQIFPSDVVTLFRHCLT
FT                 TTYFQYNNKFYEQIDGVAMGSPLSPAVANLFMESFEQQALQTASKKPAKWY
FT                 RYVDDTFVVWTHSEEELDAFLVHLNSINPRIQFTMEKELNGQLNFLDVSVM
FT                 KREDGTLGHKVYRKATHTDRYLHKDSNHHPRQKRGVIKTLVDRAHKICEPV
FT                 YLQDEVEHLRRTFKKNGYSTREIDRVLRPTTKTKNNKEPQPSKGKVFLPFI
FT                 SHVTDRIGKVLNKHGVETIFRPTRKIKEHLRSVKDARHPLDTPGVYKIPCS
FT                 CGQVYIGTTKRSVNTRLSEHKRNCRLGHTQKSAVAEHVYQEGDHQIKFNET
FT                 SVLSKTSHYYARTYREAIEIYKHRNNFNRKEEGVKLDKIWNSTLHKHVNNR
FT                 SSSSNKVGITRDSCSADVT"
XX
SQ   Sequence 2601 BP; 821 A; 570 C; 586 G; 623 T; 1 other;
     gccggccgtg aaagcctaca ttgtatgatc agacgcctct acggggagga aatgtcaaca        60
     tctgttcggc gactggaggg actgcgcaag aagaaggcac gacaactgtg ttcgcttacc       120
     ttcctgctac gctgccggga cacktcgacc attccgaaat tcaaaaggtg aagaggatgt       180
     ttcgctcggc ccaggcgcag cgaatttaca accggatgga aacagcaatg ttgagagaga       240
     ggattcacca gacgagacga gaactggcgg aaactagcag taagctatta catctccatt       300
     tattgattag caatacaatg cggtgctggg attggaataa ggtggacgac ttgacgttca       360
     gaactatgga gtggagtgca gagatttctg ctaatagaca gaagaagaaa ttttctggtc       420
     tacagaagga cgtgtctgat gctccagctg atgataattc ccgcactgtc attaatctgt       480
     cagataaaaa tttgacagat gttgaaattt ctgtcctagc caaaggaggc aattttgctg       540
     tgactcctct aaaagtaccc actgaagaca tcatagcaaa tattgaggca ggcatccggc       600
     agcttccaca acaatctgct gatataatta gaatggaaac ggccagaatt ttgcgtaaat       660
     gtaagccacc gaaaagtaac ctgtcgcaag aacaaaggaa ggcgctgagg gatatcaacg       720
     cagatcccaa cattatcgtc cttaccgctg acaagggaaa cgcaagcgtc gtgatgaaga       780
     gtgaggatta ccacagtaag atacaggata ttttggaccc caccaattac aaagaactgc       840
     agaaggatcc aactatgaag atcttaaaaa cgacgaatca attggtgaaa gcatcttcct       900
     tctcttccga cgataagaag tgctttgcaa aacggaagcg tatccccctc ggctctatgg       960
     attacctaag gtgcataaag aacagacgcc gcttaggccg attgtgagtg ccatagggtc      1020
     tcccactcac gagttagcga gacaccttgc ttcgttgctg cagccctata ttggaggtac      1080
     ggacagtcat atcaaaaatt cagttcattt cattgaaaag ctaaaggaaa tgaacgtggc      1140
     ccccagcgac attctggtta gtttcgatgt agtttcttta tttaccatga tcccggtaaa      1200
     cgaagccatc tcatgcatag cgcaaatttt tccatcagac gtagtgactt tgtttagaca      1260
     ctgcctcacc actacttatt ttcaatataa caacaaattt tatgaacaga ttgacggggt      1320
     ggctatgggc agtcctctaa gtccagcagt ggccaattta tttatggagt ctttcgaaca      1380
     acaggcgttg cagactgcta gtaaaaaacc agccaagtgg tatcgttatg ttgatgatac      1440
     cttcgtagta tggacacaca gcgaagagga attagatgct ttcttggtac atctaaacag      1500
     tatcaacccc aggatacaat ttacaatgga aaaagaactt aatggccagc ttaattttct      1560
     agatgtgtct gtgatgaaac gagaagacgg cacgttgggc cacaaggttt acaggaaggc      1620
     tacgcatacg gatcgttacc ttcataaaga ctccaaccac caccctagac aaaaaagagg      1680
     agtgattaaa accttggtcg acagggcgca taaaatttgt gaaccggttt acttacaaga      1740
     tgaggtcgaa catcttcgaa ggaccttcaa gaagaatggt tattccacca gagaaataga      1800
     ccgagttctt cgccccacga cgaaaactaa aaacaataag gaacctcaac catccaaagg      1860
     gaaagtgttc cttcccttta ttagtcatgt cacagatcgc attggaaaag tgctgaacaa      1920
     acatggggtt gaaactattt tcagacctac caggaaaatt aaagaacatt taagatctgt      1980
     aaaagatgca cgacaccctt tggatacacc gggtgtgtat aaaattcctt gcagctgtgg      2040
     ccaagtgtat atcggaacta cgaaaagaag tgtcaacact cgtctaagtg aacacaagag      2100
     aaactgccgc ctgggacata cacagaaatc ggccgtagcg gagcatgttt accaagaggg      2160
     cgaccatcaa attaaattta acgagaccag tgttttatca aaaacttctc actattatgc      2220
     tcgcacatac agagaagcca ttgaaattta caaacatcgt aataatttca atagaaagga      2280
     ggaaggtgtt aaattagaca agatttggaa ttcaacgttg cacaagcacg ttaacaatcg      2340
     atcttcctct agtaataagg ttggcattac cagagatagt tgctcagccg acgtcacgtg      2400
     atatactgtg gcgcccccta cactacctat atatgcggcg ctccctcgag gccccatcgc      2460
     agttgccact tagcctccga agatgtcttc cgcagctgaa gacgaaacgt taggggagag      2520
     ttttatccat cgaccacggc ctaccagccc ggaaatttta agtgaaattg acgccggccg      2580
     tgaaagccta cattgtatga t                                                2601
//
ID   Penelope-59_LMi repbase;    DNA;    INV; 2206 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-59_LMi.
XX
NM   Penelope-59_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2206
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 228-228 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(216..503,507..1652)
FT                 /product="Penelope-59_LMi_1p"
FT                 /translation="NKCSDSTNCESDKQPSNLIEKKLNKIICENYTYSRQY
FT                 TVKSSTDLIAKIQDIKIPDNSRFLSLDVTNLYTNVPIDETIAIIKENLLKY
FT                 RKIPKQSLNNSTITIILSHNYFSFNGHVYTQNDGLAMGSCLSGTLANIFLD
FT                 HLENKFFEEQNQWKTKVVYYFRYIDDTIILFNGCIEEIEDFHQRFNNMHKK
FT                 ITFTIEHEINNSINFLDLTISKTNSVHTFNIFRKPTTTDIIIHNSSCHPQS
FT                 HKEAYFRSAIDRITKYPLCNKNINSELNTLKDIAISNGYNPELVNNLYKSK
FT                 LNSKQKSIKDEITLTKTETRKKDKFVILPYWGQISDRIKYALKKTNLKIGF
FT                 YTNNTLGTNIIHKIEKIDRYSQSGVYKIECSKCDKAYIGQTGRPFKIRFRE
FT                 HINTSENNVSAFGTHLRESKHSTGSIEENLKILHIVCKGQLMDVLEELQIY
FT                 THMTKYPEQMLNEQTEMRNKKFIENFHNTLASI"
XX
SQ   Sequence 2206 BP; 944 A; 390 C; 290 G; 581 T; 1 other;
     cttgatgaag aaagacggat atataaataa aacgcttgac ttctttaamt gcaaataaca        60
     ttacacgtat agacaaagac cctacaaacc gatttcaagc tttgataaaa agagctataa       120
     aaatctgagt ttcttttaac acaaaaagaa caaaacagat atatagttgt gaatccacaa       180
     tgccccaagc tcagagcaca accaaaggtc cataaaataa atgttccgat tcgaccaatt       240
     gtgaatctga taaacagccc agcaacctaa tagagaaaaa acttaacaaa atcatatgtg       300
     aaaattacac atacagcaga caatatactg tcaaaagctc gacagactta attgcaaaaa       360
     tacaagacat aaaaatccct gacaacagta gattcctttc tttagatgta actaatctat       420
     atactaatgt acccattgat gaaactattg ctatcataaa agaaaacctc ttaaaatata       480
     gaaaaattcc gaagcagagt ttatgaaata atagcactat aaccataata ttatcccaca       540
     actattttag tttcaatgga catgtataca cacaaaatga tggtcttgca atgggtagct       600
     gcctgtctgg tacactagca aatatttttc tagaccacct agaaaataaa ttttttgaag       660
     agcaaaacca atggaaaaca aaagtagtat actatttcag atatatagat gacactataa       720
     ttctatttaa tggatgtata gaagaaattg aagacttcca tcaaaggttt aacaatatgc       780
     acaagaagat aaccttcaca attgaacatg aaattaacaa cagcattaac tttctcgact       840
     taacaataag taagactaac tcagtacata ctttcaacat attccgaaaa cccacaacta       900
     cagacataat aattcataat agctcttgtc acccacaaag ccataaagaa gcatacttta       960
     gatcagcaat agatcgtatc accaaatatc ctctctgtaa caaaaatata aattcagagc      1020
     taaatacact caaagatata gcaatcagta atggatataa cccagaacta gtcaataatc      1080
     tgtataaatc gaaattaaat tcaaaacaga aaagtattaa agatgaaatc actttaacaa      1140
     aaactgaaac aagaaagaaa gacaaatttg taatactgcc atactgggga caaatttcag      1200
     atagaataaa gtatgcactg aagaaaacaa atcttaaaat aggcttctac actaacaaca      1260
     ctttaggaac caatatcata cataaaatag aaaaaattga tcgctatagt caatctggag      1320
     tttacaaaat cgaatgcagt aaatgtgaca aggcctacat tggacagaca ggcagacctt      1380
     tcaaaattag atttagagaa catataaata caagcgaaaa taatgtttca gcattcggca      1440
     cacacctcag agaaagtaaa cattcgactg ggagtataga agaaaatctc aaaattttac      1500
     atatcgtatg caaaggacaa ctaatggacg ttttagaaga attacaaatc tatactcata      1560
     tgactaaata cccagaacaa atgttaaatg aacaaacaga aatgcgcaat aaaaaattca      1620
     tcgaaaattt ccataacacc ttggccagca tataaagtac aatccatcct accgtaatat      1680
     acttccaaat atgcaacaaa acgcgataaa ttatagtagc accgcaatat tatccctata      1740
     ttacaatata gacacaaaca atttattaca cttaaaatag ttcggaatga aattaaaatt      1800
     tattgtacga tatttgtatg gtactgttta tgtcacactg catataacca acgatattgt      1860
     tacaaacaaa attaagcaaa gaatatttaa taaaaacatc tttggatcaa cagctctgta      1920
     aattacacca aagtaattac aacaaacagc gtgacctaaa cagtaaccaa atataaatgt      1980
     atatatgaat gtaagtaatt acaacttgta cagtcaatat aacattgcca tattaatgta      2040
     ttttcatgta aaacacactt tgttctctgt aataggtggc ttagaaaatg ggcaaagccc      2100
     gaaactagtc gtcagcattt caaataaaag cagctttggt gcatatataa aaatgtcttt      2160
     tctacaatat ttaagagctg caaaacgcga catatcaaaa acattt                     2206
//
ID   Penelope-5N1_BTa repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Transposon from Bemisia tabaci, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; Penelope-5N1_BTa.
XX
NM   Penelope-5N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-361
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 963-963 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~84% identical to the consensus. TSDs are uncertain. Features
CC   extruded hairpin structure. The ends are similar to those of
CC   Penelope-5_BTa.
XX
SQ   Sequence 361 BP; 120 A; 64 C; 66 G; 111 T; 0 other;
     caaattttta cgaagcagcc cgagacaatg gtaacaggag aaaaacaagg gggaaaacgg        60
     gaaacaaggc taaaatacaa cactaaaaac ccgagacgtt tcgactcaaa actgagtcat       120
     tttcagtcgg aaaataaatt aaaaattaaa aaatatcgat gaaaaaacct gagacctaca       180
     tgttggtggc cgagatccga gaaaaaaaat tctacagtag gtctcaggtt tttcttcgat       240
     attttttaat ttttaattta ttttccgact gaaaatgact cagttttgag tcgaaacgtc       300
     tcgggttttt attgttgtat tttagccttg tttcccgttt ttcccccttg tttttctcct       360
     g                                                                       361
//
ID   Penelope-5_AAe repbase;    DNA;    INV; 3346 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-3_AAe; Penelope-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3346
RA   Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1438-1438 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           610..3045
FT                 /product="Penelope-5_AAe_1p"
FT                 /translation="MSEIKVTTSKCFRLYGQXIMKKRYLLLDIRFLTQCNR
FT                 KGLVPRFICIKPTVKNKASEKAVKSAQKIWLTEEIRCKHQQLSMVEEQLYS
FT                 LHLQLLKQMEYHTAAECIVHKCSEEKKTCWQSVLDTVNRNLSVCVKRKKQK
FT                 HRKKLLSLADAQATRNARRLPQIIDNFVVNLSSAQLTKWEHDLLNKGLNFA
FT                 LPPQCAPVAEMVNNIESAIQYNSFPTKSALRHDIQRCILDAAGKQNNETQN
FT                 DSNTERVVRQLKTHDVIYSRADKGNAVVMMDKEDYDARVLDMINSGPYDEC
FT                 KFKNGKPKDPLNALIEEANSTRQKIARLMGEDKLERRLNVPNSKVASLYCL
FT                 PKIHKNPIAMRPICSNICTPTEKMAAWLVNEMKGYPVTHGKSVKNSVELVE
FT                 KLEKVEIRRGEILVSFDVAALFPNVPVPDALCSLRRHLERHRAPPNHINAY
FT                 LTVAEVCMNQNYFMFRGKFYKQTFGLSMGSKLSPLLADVFMSDFETDLQKE
FT                 KLFPRIWRRYVDDIFAVVKERYLSQILEMLNSRHTTIKFTVEKEMDGKLPF
FT                 LDLMITKKEDNTLRFGIYRKPTSTDRYITADSNHYGAQKQAAFHSMAHRLF
FT                 NIPMEKEEFVEERMKIHEAAAVNGYDEEFVNKILRKHERKKHRQIATTLQP
FT                 HKEEPLRISLPFYPKLTNPIQGILKQYGMQAAYKSGHTLKEYLCALKDKTP
FT                 AEDLSGIYEIPCKDCPSVYIGQTRRKFKIRLREHRNAVDNERVHESSVAVH
FT                 SVELKHNIDWDKAKLKKSVRKVSHLNAWESMFISNAEQPLMNDDDAPISSP
FT                 LFHLTKLDFK"
XX
SQ   Sequence 3346 BP; 1041 A; 706 C; 720 G; 878 T; 1 other;
     ctgaatggcg ctttcaatat tattgaccat ctcagctaca ggggcgcatt ggggcggtag        60
     ggcaaaattg agacccttat tgagaagatc atgttcgcat tcggttaatt gggcagatga       120
     tagattcact acaaagttat caatgatctg cggtaaacga cgtgcattcc tagtcgcctg       180
     tgcatcggca agcgagagca attttttacg atgcttttgc ttcttccttt tcacacacac       240
     tgagaggtta cggtttaccg tatctaacac agattgccaa cacgttttct tctcttcgct       300
     acatttatga acaatacact cagctgctgt gtggtactcc atttgcttta acagctgtaa       360
     gtggagcgaa tacagctgtt cttcaaccat tgacaattgc tgatgtttgc acctaatttc       420
     ttcggtaagc cagatttttt gcgcactttt cacagccttc tcactagctt tatttttgac       480
     ggttggctta atgcaaatga actttggaac aagacctttt ctgttacact gtgtaagacc       540
     aatgtgtccg gtctcgcgtc gcgtcttgtg agtgtactat agttcttacg ttagcacaaa       600
     atcttaaaaa tgagtgaaat aaaggttaca acctcaaagt gctttcgcct ttatggccaa       660
     ncgattatga agaagagata tttgctatta gatattcgat tccttacaca gtgtaacaga       720
     aaaggtcttg ttccaaggtt catttgcatt aagccaaccg tcaaaaataa agctagtgag       780
     aaggctgtga aaagtgcgca aaaaatctgg cttaccgaag aaattaggtg caaacatcag       840
     caattgtcaa tggttgaaga acagctgtat tcgctccact tacagctgtt aaagcaaatg       900
     gagtaccaca cagcagctga gtgtattgtt cataaatgta gcgaagagaa gaaaacgtgt       960
     tggcaatctg tgttagatac ggtaaaccgt aacctctcag tgtgtgtgaa aaggaagaag      1020
     caaaagcatc gtaaaaaatt gctctcgctt gccgatgcac aggcgactag gaatgcacgt      1080
     cgtttaccgc agatcattga taactttgta gtgaatctat catctgccca attaaccaaa      1140
     tgggaacatg atcttctcaa taagggtctc aattttgccc taccgcccca atgcgcccct      1200
     gtagctgaga tggtcaataa tattgaaagc gccattcagt acaacagctt cccgactaaa      1260
     tccgcattac gtcacgatat ccaacgttgt attttggacg ctgcaggaaa acaaaacaac      1320
     gaaacacaga acgattccaa tacggagaga gtagttcgac aattgaaaac acatgatgtg      1380
     atctactctc gagccgacaa ggggaacgct gtggtgatga tggataaaga ggactatgac      1440
     gctagggttt tggatatgat caattccggc ccatacgatg aatgtaaatt caagaatggt      1500
     aaacccaaag atcctctcaa tgcgttgatc gaggaagcaa acagcacacg gcaaaagatt      1560
     gcacgtttga tgggtgagga taagcttgag aggagactga atgtcccaaa ctcaaaagta      1620
     gcatcgttgt actgcctccc aaaaatccac aaaaatccta tagcaatgag gcctatttgt      1680
     tccaatattt gcactccaac ggaaaaaatg gcagcgtggt tagtaaacga aatgaagggc      1740
     tatccggtca cccacggaaa gagtgtgaaa aattcagtgg aattagtgga aaaactggaa      1800
     aaagttgaaa ttcgtagagg agaaattttg gtttcattcg atgtggccgc actgtttcct      1860
     aacgtacctg taccagacgc gctttgcagt ttacggaggc atttggaacg acatcgtgcc      1920
     ccacctaacc acattaatgc ctatctcacc gtggctgaag tgtgcatgaa ccaaaactac      1980
     ttcatgttta ggggtaagtt ttacaaacaa acctttgggc tcagcatggg tagtaagctc      2040
     tcgccactat tggctgacgt tttcatgagc gattttgaaa cagaccttca aaaagaaaaa      2100
     ctttttcctc gaatttggcg acgctacgtt gacgatattt tcgcagtagt gaaagaacgc      2160
     tatttgtcac aaattctcga aatgttgaac tcccgacaca ccaccatcaa attcacggtt      2220
     gagaaagaga tggatggaaa actccctttc ttggatttga tgataaccaa gaaagaggat      2280
     aacaccttga gattcggtat ctaccgaaaa ccgacatcca ccgatcggta tataacggcc      2340
     gattctaacc actacggagc acaaaaacaa gccgcgttcc actcaatggc acaccgcctt      2400
     ttcaatattc ccatggaaaa agaagaattc gttgaggaga gaatgaagat tcatgaagct      2460
     gcagcggtaa atggttacga tgaagaattt gtcaacaaaa tacttagaaa acacgaacgg      2520
     aaaaaacatc gccaaattgc tactacactt caaccccata aggaagaacc cctacggata      2580
     agcttgccgt tttatccaaa attaaccaac cccattcaag gcatactgaa acagtacgga      2640
     atgcaggcag cctacaaaag tggccacaca ctgaaggagt atttgtgtgc cctcaaagac      2700
     aagacccctg cggaagatct gtctggaatc tatgagattc catgcaaaga ctgcccatca      2760
     gtttatattg gccaaacgcg aaggaaattt aaaatccgtt tgagggaaca ccgaaacgct      2820
     gtggataacg aacgagtcca tgagtctagt gtggcagtac attctgttga actcaaacac      2880
     aacatagact gggacaaggc gaagcttaaa aagagcgtcc gaaaagtttc ccatttaaat      2940
     gcttgggaat ctatgttcat ctccaatgcc gaacaaccgt tgatgaatga cgacgatgcc      3000
     ccgataagtt cgccgctttt tcacttgacg aaactggact tcaaatagtg ttatctcttt      3060
     ctgacgtgta ctggagaaag tacgaagctg ttttgttctc ttctatgtaa tcagttggac      3120
     atcgtcctgt agatgggcaa catcgagccc gaaaccggtc gacgaaaaag gtaaatgttt      3180
     aaatccttta tatgtttgta agaacaataa gtgttgtgtc cagtctcgcg tcgcgtcttg      3240
     tgagtgtact atagttctta cgttagcaca aaatcttaaa aatgagtgaa aactaagttg      3300
     gaggttggat gtaaacttca actccaaaca ctagcgtttt ctcggt                     3346
//
ID   Penelope-5_BTa repbase;    DNA;    INV; 3117 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; TSD; Penelope-5_BTa.
XX
NM   Penelope-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3117
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 959-959 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Flanked by a TSD of 11-bp in length. Featured
CC   only with one TIR region (pos 41-105 vs 3053 3117). For some of
CC   the insertions, the 3 termini is extented another ~37-bp.
XX
FH   Key           Location/Qualifiers
FT   CDS           263..2788
FT                 /product="Penelope-5_BTa_1p"
FT                 /translation="MFYQQVRRLHGYATVSSLKQLRKISRKLVLSSCRKIF
FT                 LLRCREKKVFPAFINFHLKHITNGLHKKRNKCIEVTEKFKSSLLNLCIEDV
FT                 HYEIMDLNHNLRNVITKLKASLPHFVLIDFIVNTTLIAKRLGRVTWQRLEN
FT                 KLVRLEEIVVDKYHKLFGPFMEKRQLWLENISSTVLPGYVERVMCLGPMFS
FT                 LPFFKIGADANSIFKPVPLEKIISQIEGKIRNESSMVADKIREGICLVINR
FT                 YHREMQRSQGYPEKINIMSNRKFNQCRLMRNLKEDLKNTIMFCKRNRSLKF
FT                 VKADKSNKVVVMDGNDYSNKMLHILRDTSVYKKVARSLVPSQIDKNNSIVK
FT                 KWLAEGHINDGMCKHLMVSGGSVAKIYGFVKLHKAELPLRPIVSTIGTPYQ
FT                 KLSRFLSSILSNIVGKGDSHIRNSFEFFDFINGVKVPDGYDLISLDVVSMY
FT                 TNISVDFALQCVELKWEEVEMFCPLPKEQFFSTLKVCLTNTICQYNDAFYQ
FT                 QISGLAMGGSLSAVMANISMERIESTALSLSPIEIRMYKRYVDDIFSCVKK
FT                 EDTHAILEFFNSLNPAIKFTLEIENNNCLNFLDMTLIRVNSEIRCKWYQKP
FT                 TASGRYVNFLSVQPMNVKKNVASNLARRIIGLSHVSYRHEMIQIGKNLLVE
FT                 NCYPPNLIAKIFRQVLSSFNKRGGQDKTTKERDLDKIVCLPYVPFLSENLS
FT                 SILKLFGYHVVNTKYNNLEFLMSRVKAKNPILQESGLVYKIPCGNCDISYI
FT                 GQTKQLLRKRLGGHKYDNSELTALKRHQTEFGHRFDFDKVVILCKEEKLFP
FT                 RLVLEMIEILKHGDSVCNNRTDISGLSAIYHSLFKKSGLG"
XX
SQ   Sequence 3117 BP; 922 A; 547 C; 649 G; 999 T; 0 other;
     atagatacaa atttttagga gcagcccgag acgatgataa cagtggaaca acaaagatga        60
     aaaaaacggg aaacaaggct aaaaatacac aattatgaaa cccgatcccc gatttgtatc       120
     tatgattgca ctgggttcat tgtgcctttt aattgttatg tcttttcgat ttttaacctg       180
     tgtttattct gacttttggt aagtcgtttt atcttttact cagttgacac atttgtgcac       240
     cattcattca acagactgca atatgtttta tcaacaagta cggcggttac atggttatgc       300
     aactgtttca tctctcaaac agttaaggaa aattagtagg aaattagtgt tgtcatcatg       360
     tcggaaaatt ttcctgctga gatgtaggga aaagaaggtt ttcccggcat tcatcaattt       420
     ccaccttaaa cacatcacca atggtttaca taagaagcgt aacaagtgca ttgaggttac       480
     ggaaaagttc aaaagctcct tgttgaactt atgcattgag gatgttcact atgagattat       540
     ggatctcaat cataatctta gaaacgtcat aaccaaactt aaagcgtcgc taccgcattt       600
     cgttctcatt gattttattg ttaataccac cttaattgcc aaacgtctcg ggcgtgtcac       660
     ttggcagcgc ttggaaaata aacttgtcag gctggaggaa atagttgtgg acaaatatca       720
     taaattgttt ggtcctttca tggaaaagag acagttatgg ttagagaaca tctcttcgac       780
     ggtattgcca ggctatgttg aaagagtaat gtgtctgggt cccatgtttt ctttgccatt       840
     ttttaaaatc ggagctgatg caaactcaat ttttaaacct gttcctcttg agaaaataat       900
     ttctcaaatt gaaggtaaaa tcagaaatga atcatctatg gttgctgata aaattaggga       960
     aggcatttgc ttggtgatta accgttatca ccgagaaatg caaagatctc agggatatcc      1020
     tgaaaaaata aacatcatgt cgaaccggaa atttaatcag tgtaggttga tgagaaatct      1080
     caaagaggat ctaaagaaca ccataatgtt ttgtaaaaga aacaggtctt taaagtttgt      1140
     aaaagcagat aagtccaaca aggtagtggt catggatggc aatgactact caaacaaaat      1200
     gcttcatatt ctcagggata caagtgtata caagaaggtg gctaggtctc tagtgccttc      1260
     gcaaatcgat aagaacaact ctattgtcaa aaaatggctt gcggaaggtc atataaatga      1320
     tggtatgtgt aaacatctta tggttagtgg tggcagcgtt gccaaaattt atggttttgt      1380
     taagctgcat aaggcagaat tgcctttgcg accaatcgtt agcacaatag gaacaccata      1440
     ccaaaaacta tccaggtttt tatctagcat tttgtcgaac attgtcggta agggggactc      1500
     gcatattcgg aactcttttg aattttttga tttcatcaat ggtgtaaagg tacctgacgg      1560
     ttatgattta atatctcttg atgtagttag catgtacact aacatatctg ttgattttgc      1620
     ccttcaatgt gtggaattga aatgggagga agttgaaatg ttctgtccgt tacctaaaga      1680
     acagtttttt agtacgttaa aagtgtgcct caccaatacc atctgtcagt ataatgatgc      1740
     gttttatcaa caaatttcgg gtttggccat gggaggtagc ctttcggctg tcatggctaa      1800
     catatccatg gagcgcatcg aaagtactgc tttgagttta tctcccatcg aaatccgcat      1860
     gtacaagcgg tatgtcgatg atattttttc ttgtgtaaaa aaagaagata cgcatgctat      1920
     tcttgaattt ttcaacagtt taaatcccgc cataaaattt acccttgaaa ttgagaataa      1980
     caactgcctc aattttttgg atatgacttt aataagggtg aatagcgaga ttagatgtaa      2040
     gtggtatcag aaaccaacgg cgtctggtcg ttatgttaat tttttatctg ttcaacccat      2100
     gaatgtaaag aaaaacgttg catctaattt agcacggcgc ataattggtc tctctcatgt      2160
     ttcatatcgg catgagatga tccagattgg aaagaatctg ttggttgaaa attgttatcc      2220
     acccaatttg atagcaaaga ttttccgcca ggtacttagt agttttaata agagaggggg      2280
     gcaggataaa actaccaaag aacgggatct cgacaaaatt gtatgccttc catacgttcc      2340
     cttcctttcg gaaaatttgt catcgatttt aaaattgttc gggtaccatg tggttaacac      2400
     caaatacaac aatcttgagt tcctgatgtc tagggtgaag gctaaaaatc cgattctgca      2460
     ggaatcgggg ttggtctata aaattccttg tggaaattgc gacatcagtt acatcggtca      2520
     gaccaagcaa cttctaagga agaggcttgg tggtcataaa tatgacaata gtgagttaac      2580
     agcactcaag aggcaccaaa cagaatttgg tcaccggttc gattttgata aggtggtaat      2640
     tttatgtaag gaagagaagt tgtttcccag actggtcctg gaaatgatcg aaatcctcaa      2700
     acatggggat tctgtgtgta ataaccgcac tgacatcagc gggcttagtg caatatacca      2760
     ctcacttttt aaaaagtcag gtttaggttg acgccccagc ggcacctatt ggcttttcct      2820
     tgaacttaat tgtttcactg gttagtgctg ccatctgtgt gtggatcgtg aactagcgta      2880
     tcggtcaatt tcggttactg gtgctggcat cgatgtgtct tgtttgttat caattttctt      2940
     tttttctctc agatcccggc cccaccatgt agagctcagg tttttagcgt ttttctttta      3000
     aaatttttta ttgtttccga ctgaaaatga ctcagtgttg agtcgaaacg tctcgggttt      3060
     cataattgtg tatttttagc cttgtttccc gtttttttca tctttgttgt tccactg         3117
//
ID   Penelope-5_CoFl repbase;    DNA;    INV; 2778 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-5_CoFl.
XX
NM   Penelope-5_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2778
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2410-2410 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2258
FT                 /product="Penelope-5_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="SDINIYKNYLQKELDKIEKSLIFTLGIRFFELFERFF
FT                 HYKSKIGIKTFDDILTNKFKILYFRKYKHTYEKKININNNSIRVSKTNSNI
FT                 KSKWLHNLTTINLPKEVQFCINLGKNFNFFDFENQNETKRVYLELFKSLNK
FT                 PLHKNQSISNNIKFKILDLVKTHIKNNNKSSLDILISNMLNNCNKFLKNNK
FT                 NIMITKSDKGGAFVIIDKQDYINKVEESLNDKKLYEVVEHNPLPSLINKTS
FT                 NLLNELNGSDLFGDSGNKKVFNTIRDKCILAKCYGLVKVHKPNQPMRLIIS
FT                 NIGSPTYFLSKWVSEFLKNNLPPSPHNVKNSFELKNDIKNFLIPDGFCIVS
FT                 FDVVALFNNIHFESVKVALESVWHILNLKINLEFFSFLNIIRFIMENNYFS
FT                 FNNKNYRQKFGSAMGSPCSPSLADIVMRHIIKMLLFLGPFEIKLIKVYVDD
FT                 LLACIKISESDKVLNYLNSIDKHIQFTMETPNNNSINYLDMTLTWDNNGSI
FT                 KTNWFQKPTHANLHLNYWSHSPLSQKIGVIYSLVDRAIKLSDTCYHNNNLK
FT                 KVYEILKENNYPPDFIKKHAERRKKIIYYNNKNDNNNNSNKKLNDDNKNYI
FT                 VLPYIKNCDSNFKSLLNKVSYKTIFKSVNKQKFLNQLGKDSIKNKDKVCSV
FT                 YCIKCKNCDKCYVGQSSRVVSKRINEHKRDVKSKKNESAIFNHVQDNGHSF
FT                 DFDNFKVIDNEPNFYKRLISEMVFIKKYNTVNKVTDTQSLSSVFEFYINKY
FT                 L"
XX
SQ   Sequence 2778 BP; 1103 A; 361 C; 371 G; 943 T; 0 other;
     tctcagacat taatatatat aaaaattatt tacaaaaaga attagataaa attgaaaagt        60
     ctcttatatt tacattaggt attagatttt ttgaactttt tgaaaggttt tttcattaca       120
     aatctaaaat aggtataaaa acctttgacg atattcttac taacaaattc aaaatactat       180
     attttagaaa atacaaacat acttatgaaa agaaaataaa catcaacaat aacagtataa       240
     gagtctctaa aacgaatagt aacatcaaat ccaaatggtt acacaatctt actactatta       300
     acttaccaaa agaggtgcaa ttttgtataa atctaggaaa aaatttcaat ttctttgatt       360
     ttgaaaatca aaatgaaacc aaaagagtct atctagaact ttttaagagt ctaaataaac       420
     cattacataa aaatcaaagt attagtaaca atataaagtt taagattcta gatttagtaa       480
     aaacacatat aaaaaataac aataaaagta gcttggacat attaatatca aacatgttaa       540
     ataattgtaa taagttttta aaaaataaca aaaacataat gatcacgaaa agtgacaagg       600
     gtggagcttt tgtcattata gataagcaag actatatcaa taaagttgaa gaaagtctga       660
     atgacaagaa attgtatgag gtggtagagc acaatcccct accttcttta atcaataaaa       720
     caagtaacct gttgaatgaa ttgaatgggt cagacctttt tggtgatagt ggtaataaaa       780
     aagtttttaa cacaataagg gacaaatgta ttttggctaa gtgttatggc ttagttaagg       840
     tacataaacc aaatcagccc atgagactta taatctcaaa tataggatct cccacatatt       900
     ttttatcaaa gtgggtttca gaatttttga aaaataattt acctccttca cctcataacg       960
     taaaaaatag ttttgaactt aagaatgata ttaagaattt ccttatacct gacggttttt      1020
     gtatcgtaag ttttgatgtc gttgctttat ttaataacat tcattttgaa tcagtaaaag      1080
     tagctttaga atcagtttgg cacattttaa atttaaaaat taacttagaa ttcttttcat      1140
     ttctaaatat cattaggttt attatggaga ataattattt tagcttcaat aacaaaaatt      1200
     acagacaaaa gtttggatct gccatgggaa gtccatgcag cccatcactt gcagatatag      1260
     ttatgcgtca cattataaaa atgctattat ttctcggtcc ctttgaaatt aaattaataa      1320
     aagtttacgt agatgatttg ttggcttgca ttaagatttc ggaatccgac aaggttttaa      1380
     attatttgaa ttcaattgat aagcatatac agtttactat ggagacacct aataacaata      1440
     gcataaatta tttagatatg actttaacat gggataataa tggaagcatt aaaaccaatt      1500
     ggtttcagaa accaacacat gcaaaccttc atttgaatta ttggtcacac tctccattgt      1560
     cacaaaaaat tggagtgatt tattctttgg tcgatcgtgc aattaaattg tcagacactt      1620
     gttatcacaa taacaaccta aaaaaggtat atgaaatttt gaaagaaaac aattacccac      1680
     ccgattttat aaaaaaacac gcagagagaa gaaaaaaaat tatatattat aataataaaa      1740
     atgataataa taataattca aataaaaaat taaatgatga taacaaaaac tatattgttt      1800
     taccgtatat aaaaaattgt gatagtaact tcaaaagttt attaaataaa gtaagttata      1860
     aaaccatttt taaatctgta aataaacaaa aatttttaaa ccaattagga aaagactcaa      1920
     ttaaaaataa ggataaagtt tgttcagtct attgtattaa atgtaaaaat tgtgataaat      1980
     gttatgttgg tcaatctagt cgagtcgtat caaaaagaat aaatgaacat aagagagatg      2040
     tgaaaagtaa aaagaacgaa tcagctattt tcaatcatgt acaggacaat ggccactcat      2100
     ttgattttga taattttaaa gttatagata atgaaccaaa tttttataag cgtttaatat      2160
     cagaaatggt ttttataaaa aaatataata cagttaacaa agttacagat acacaaagtt      2220
     taagctcagt ttttgaattt tatataaaca aatacttata acaattttca taatttgata      2280
     attcataaca atttatatcc atcaatctct ttttatcggt tagtggccac tttccttgat      2340
     attgagtttg attctttaaa gtaaaaataa acttagtttc ataaattacc gctgattttg      2400
     tactacacca ggttcaccac tgttgtagta ctacacacac atgttctcac gtagctttaa      2460
     aaagaattcc catatattgt actatatcgc agttgagtag aataaacatc tcacattgac      2520
     gacactctgc gattattgtt taatattgta agtaaagata aaacttttat acattgttag      2580
     tgcgttttct gttgtgtaca tctttatata catatttata ttaccattgc tgtatattaa      2640
     tttttagtga cttgataagg actgccttgg agtagtcgaa acgtcgtttt ttaaaataaa      2700
     gtcaatttga acagcatagc ccttagtact tgtcattatt tattgtatta ttagctgttc      2760
     ttggaatcaa acaatatc                                                    2778
//
ID   Penelope-5_FoCa repbase;    DNA;    INV; 3028 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-5_FoCa.
XX
NM   Penelope-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3028
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2738-2738 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. The sequences 1-119 and 2910-3028
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..2709
FT                 /product="Penelope-5_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MGXGWKDIKQKIQRRGGPDLLHTLKTLEDTSKKFTQC
FT                 KNDVIFLRKCRAHNVTPTSFRIKNNWSTLSKTDGWIQNLEQRILKQAIMDK
FT                 YKTINNYQKAITDKKNILKSQCPDLYDTITLFINTRINHLHNQTKSRQIRK
FT                 LDKLIDTKIQKIAKNLPHTTHTQHSQTTNIKSSIINLSERILSPLEQKTLE
FT                 IGLNYALPIKNHKHQLIETTLAIENWLKNTDDENLTEHDKNIIRSGASRII
FT                 HDHKKQTNTNTSDFTWALPHIEKLRTDNSIVICPADKGNATVIMNRNEYET
FT                 KMAQLLDDPAYKILPNDPTKEIEQSIQQKLHKLHNMNRIDKHTYDNLAPKH
FT                 SSAPIFYGLPKIHKSGIPIRPICDFRHSPSYNLAHYLNKILKTITIKSKHS
FT                 ILNSYKFAEQIKTLKIPRDQTMISLDVKSLFTKVPIQPTLNYIKQQLDANK
FT                 DIWKTKTSLTSTEILELLTLCISSNYFQYKGTYYQQTTGTPMGSPISPVFA
FT                 EFFMQYLELTLVNNNPLIHFHRRFVDDTFTCITKNETTNILNQFNNFHPEI
FT                 QFTLEEETNNQLHFLDITIIRYTDGTTKHKVYRKSTHTGRYLHYTSYHHQS
FT                 HKISVIDSLLYRAFTICSPEFLSQELQLIKSQLMQNGYPLHLINKRIKKFQ
FT                 TNEPKTLETGARIILPYSGPLTTKLSHFLRRTLSCTFGYIPGKKVGNMICT
FT                 HKQAAPTPQIGIYKIPCSCNKLYIGETCRPLLDRIKEHKSETDKVNITYTN
FT                 ISQMTTRNKNKHVTEQKIVSAVAQHIKDNPTHTIHFQSTALIESEHRYFYR
FT                 KYKEGLYIKKLDKDKINSNDGKNINPIWAALLLPIIRHPKFINTKPLPLSS
FT                 DTQQNINPT"
XX
SQ   Sequence 3028 BP; 1203 A; 683 C; 358 G; 783 T; 1 other;
     aatttcccat cttgtaaatg tcttgataat gaatagcaga tagcattcga aatattgaca        60
     aaataaagca aaactttttc ttcgactttt ccacttaact ccgtgtaatc caattattaa       120
     ataatgggta ktggatggaa agatatcaaa caaaaaatcc aaaggagggg cggacctgac       180
     ctactacaca ctctcaaaac tctggaggac acttccaaaa aattcacgca atgcaaaaat       240
     gatgtgatct ttttaagaaa atgccgagct cataatgtga ccccaacctc attccggatc       300
     aagaacaatt ggtcaactct ctcgaaaacc gatggatgga ttcaaaactt ggagcaacga       360
     attctaaaac aagcaatcat ggacaagtac aagaccataa ataattacca gaaagcaatc       420
     acagataaga aaaatatcct taaatctcaa tgtcccgact tatacgacac cattaccctt       480
     ttcataaata cccgtatcaa tcatctccat aatcagacta aatctagaca aatacgaaaa       540
     ctcgacaaat taattgacac aaaaattcaa aaaattgcaa aaaatcttcc tcatacaaca       600
     cacacacaac actcacaaac tacgaacata aaatctagca ttattaatct ctcagaacgc       660
     atactatccc cacttgaaca aaaaacacta gaaatagggc taaactatgc attaccaata       720
     aaaaatcata aacaccaact tatcgaaaca acattagcaa tagaaaattg gctcaaaaac       780
     actgacgacg aaaatcttac ggaacatgac aaaaacataa ttagatcagg tgcatcaaga       840
     attatacatg atcataaaaa acaaaccaat acaaatactt ctgattttac ttgggcacta       900
     cctcacatag aaaaattacg tacagacaat agcatcgtaa tatgtcccgc agacaaaggc       960
     aatgcgacag taataatgaa taggaatgaa tatgaaacca aaatggcaca attattagat      1020
     gaccctgcat ataaaatact acccaatgac ccaacaaaag aaatagaaca atcaatccaa      1080
     caaaaactac ataagttgca taatatgaat agaattgaca aacacacata cgataacctt      1140
     gcaccaaagc attcttccgc tcctatattt tatggtttac ctaaaataca taaatcaggc      1200
     attccaatta gaccaatctg cgatttccgt cattcacctt cctataattt agctcactat      1260
     ctgaacaaga ttttgaaaac aatcacaatt aaaagcaaac actccattct caattcatac      1320
     aaatttgcag aacagattaa aactttaaaa attccacgcg atcaaaccat gatttccctt      1380
     gatgtaaaat cactcttcac aaaggttcca atacaaccaa cactaaatta tattaaacaa      1440
     caattagacg ctaacaaaga tatatggaaa accaaaacta gtctcacttc tactgaaatc      1500
     ttagaattac tcacactttg catttcctcc aattatttcc agtacaaggg cacatattac      1560
     caacaaacca caggcacacc aatgggttcc ccaatttcac cagtttttgc tgaatttttc      1620
     atgcaatatt tagaactcac actagtgaat aataacccac tcatacattt tcatcgtagg      1680
     ttcgttgacg atactttcac ttgcatcaca aaaaacgaaa caacaaacat tttaaatcag      1740
     ttcaataatt tccatccaga gatacaattc acgttagaag aagaaactaa caatcaatta      1800
     cattttttag acataaccat aattagatac acagatggta ctacaaaaca caaagtttac      1860
     agaaaaagta cacacacagg tagatatttg cattacacat cttaccacca ccaatctcac      1920
     aaaatttcgg taattgattc acttttatat agggcattta ccatttgcag tccagaattc      1980
     ctaagccaag aattacaatt aataaaatca caactcatgc aaaatggcta ccctttgcat      2040
     ctcataaata aacgcattaa aaagtttcag acaaatgaac ctaaaacatt agagacaggc      2100
     gcacgtatca tactaccata ttctggcccc ctcacaacaa aactttcaca ctttcttaga      2160
     cgcactctct cttgcacttt cggttatatt ccaggtaaaa aggtaggaaa tatgatatgt      2220
     acacacaaac aggcagcacc aacccctcag ataggtatat ataaaattcc ttgctcttgt      2280
     aacaaactat atataggtga aacatgtaga ccacttttag atagaataaa agaacacaaa      2340
     tcagaaacag acaaggtaaa cataacgtat accaacattt ctcaaatgac caccagaaac      2400
     aaaaacaagc atgtcaccga gcaaaaaatc gtttcagcag tagcacaaca tatcaaagac      2460
     aatcccactc acaccatcca ttttcaatcc actgcactta ttgaatcaga acacagatat      2520
     ttttaccgta aatacaaaga aggactttac attaaaaaac ttgacaaaga caaaatcaac      2580
     tctaatgacg gcaaaaacat caaccccatt tgggcagctt tacttctacc aatcattcga      2640
     catccaaaat ttattaacac aaaaccactc ccactttcaa gcgacacaca acaaaacatc      2700
     aacccaactt gatgccaaat ggggtctggg tggattgact gaggttttcc ttcttttctt      2760
     tatggcaagg ttttccctcg gtccatcaag ttgggtccct ttacattttt tatcacttca      2820
     aaacgtgacc ccagtatcca acgccacaaa catgacaact atttttatga atttacacta      2880
     actaatttca actacgaaat cttgtaacaa atttcccatc ttgtaaatgt cttgataatg      2940
     aatagcagat agcattcgaa atattgacaa aataaagcaa aactttttct tcgacttttc      3000
     cacttaactc cgtgtaatcc aattatta                                         3028
//
ID   Penelope-5_LMi repbase;    DNA;    INV; 2873 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-5_LMi.
XX
NM   Penelope-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2873
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3180-3180 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           309..2267
FT                 /product="Penelope-5_LMi_1p"
FT                 /translation="MNNKKLYELHLFLARKLDVEDWEKVDRLTFQQATRST
FT                 ESITSRQMEKFAKLQPITTEEEQXLDTQRTVVNLSSHTLSEAATQILAKGL
FT                 NFAITPKYVPKEDIIESVETSVRHLPQAEAEKIRQETVRILSQAKPPKQNI
FT                 SREERQAIVELKKNPDLVVIQADKGNATVVXDTPDYNKRMENLLGDPIYKK
FT                 LKGDPTAKITRSTQALLKQTRMXFDTARRLIPQVPQASRMYGVPKVHKEDF
FT                 PLRPIVASINSPTYKLAKELVPKLRHLVSHTDSYVKDSTHFVALLKEKSVS
FT                 ATDLMVSFDVTSLFTNVPVSDTMNILEERLAPDTCDLVRHCLTTTYFKWKG
FT                 EFYEQTDGVAMGSPLSPIAADIFMQAFEETALQSAPLRPACWLRYVDDTFV
FT                 IWPHGEEELQNFHEHLNRQHSKIHFTIEVEKNGVLPFLNVEVYRKSDGKLG
FT                 HRVYRKATSTGRYLHASSHHHPMQKKSALQTLTRRAHRISDADHLQVELRH
FT                 LRSTFAANGWMDNKTMSRRNESNRGEQEEAQSIALLPYVQGITERVGKVLR
FT                 RAGIKPVFRSTNKTKDFLGSTKDAVDKLSNAGVYEISCECGLVYIGETGRA
FT                 ICTRLSNMKGTYGLDSTQSQRFLSTTISAENSYLSARPACWRNNHSQRGGR
FT                 LERL"
XX
SQ   Sequence 2873 BP; 882 A; 741 C; 697 G; 544 T; 9 other;
     atgacgacgc aattcatacc cgcaakaatt ttattgacag tgacaggccg cggaagccta        60
     cgcttgattt aatcaacctg tatgggcagg aagtacatcg aaacatcagg cagctggaat       120
     cgctgcgtct aaagagaggt aaacgctgaa tgaccttgtt tacttgaaga gatgtaggga       180
     cacaatgtag tgccaaaatt tctacggctg acgtcactat aaaatcgaac aaggcgaaga       240
     acatctgtct acgagccagc aaagctttgc tgagggaaag gatacgggac atacggacca       300
     gccttgacat gaacaacaag aagctctatg aactgcacct gttcctggca agaaaactgg       360
     atgtggaaga ctgggagaag gtcgataggt tgaccttcca acaagccacg aggtctactg       420
     agagcatcac cagtcgtcag atggaaaagt ttgccaagct gcagccgatm acgacggaag       480
     aagaacagwc cctggataca caaaggacag tggtaaacct ctccagccac accttaagtg       540
     aagcagccac tcagatcctg gctaaggggc tcaattttgc gatcacaccg aaatatgtwc       600
     cgaaggaaga catcattgaa tcagttgaga cttcggtgcg tcacctgcca caagccgagg       660
     cagagaagat ccgacaagaa actgtacgaa tcctgtctca ggcaaagcca ccaaaacaaa       720
     acatcagcag ggaggaacgt caggccatag tggagctgaa gaagaatcct gacttagtag       780
     tgatacaggc agacaaaggc aacgccactg tcgtcwtgga cacaccagat tacaataaac       840
     gaatggaaaa tcttctcggt gatcccatct acaagaaact taagggtgat ccgacggcta       900
     agataaccag atcgacgcag gcgctgctga agcaaaccag gatgamcttc gacacagcca       960
     gaagactcat cccacaagtt ccacaggcat cgaggatgta tggggtaccg aaggtccata      1020
     aagaggattt tcctttgmgg cctatagtgg ccagcattaa ttcacccaca tacaagctgg      1080
     caaaagagct ggtaccaaag ctccgacatc tagtgagcca cacagattca tatgtcaagg      1140
     attcgaccca tttcgtggca cttttaaaag agaagagtgt atcagctacg gatctgatgg      1200
     ttagttttga tgtaacatcg ttattcacta atgtaccagt gtcagacaca atgaacatat      1260
     tagaagaacg cttggcacct gacacctgtg acctagtgcg ccactgcctg acgaccacct      1320
     acttcaagtg gaaaggagaa ttttacgaac aaacagacgg tgtagctatg ggctccccac      1380
     tttcgccgat tgcagcwgac atcttcatgc aagcatttga agaaacggct ctccagtcag      1440
     caccactacg cccagcatgc tggctgcgat acgttgatga cactttcgtc atctggccac      1500
     atggggaaga ggagctacag aacttccacg aacatctcaa tcggcagcac agcaaaatac      1560
     atttcacaat agaagtagaa aagaatgggg tgctgccttt cctcaacgtc gaagtctacc      1620
     gaaagtctga cggtaaactc ggccacaggg tgtacagaaa agccaccagc acgggmaggt      1680
     acctccacgc ctcctcccac caccacccca tgcagaagaa atccgccctt caaacactaa      1740
     caaggagggc ccacaggatc agcgatgccg atcacctaca ggtggaacta cgacatctca      1800
     gatccacctt tgcggccaat ggctggatgg ataacaaaac aatgtccaga aggaatgaaa      1860
     gcaatagagg ggagcaggag gaagcacaaa gcatcgccct attaccttac gtgcagggca      1920
     tcactgaacg tgtgggcaag gttcttcgtc gggcaggcat caagccagtc ttccgcagca      1980
     ccaataagac taaggatttc ctaggttcaa ctaaggacgc agttgacaaa ctgagtaatg      2040
     ccggcgttta tgaaataagc tgcgagtgtg ggctggttta tataggagag accggacgag      2100
     caatctgcac gaggctttcg aacatgaaag gtacatacgg cttggacagc acacaaagtc      2160
     agcggtttct gagcaccaca atcagtgcgg aaaacagtta tctttcggcg aggcccgcgt      2220
     gctggcgaaa caaccattct caacgaggag gaagattaga gaggctatag aaatagcgaa      2280
     gcgtcccgcc aatatgaaca gggaggatgg ctacaggctg ccggcgtctt ggctgccagc      2340
     agttgcaacg ctacgtgacg gcaccgcgcg cggaatgact cgcgcaggcg ccccggagac      2400
     cacagcggcc gcgaacacgc agagcaccgg cccgccgccg tctgcgccag gcgacaagtc      2460
     aacagcggca cgccacaacc gctgtccgtt ctctcaggtc cattccgcca atagcaactt      2520
     gtaatgcaaa agccaatcgg aaacgtccat tttgaccaat aagggggaag aatgcaacct      2580
     ccaatcatat gaaaaacaag ccattaaaac accaatcatc aacgcccctt tccaccaatg      2640
     gcgtgcaata atataaccac caataaagga aaaccaacgt cccccttcct ctccctcatc      2700
     cgctgctata taaaccccaa gctatcgtac attcagcagt cagacacaga ccctgatgaa      2760
     ggccgcctgc aacagtggcc gaaacgtcgg tagagtttat aaaatgacga cgcggtctca      2820
     tacccggaag aattttattg atagtgacaa cgccgcggaa gcctacgttt gca             2873
//
ID   Penelope-5_SIn repbase;    DNA;    INV; 2628 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-5_SIn.
XX
NM   Penelope-5_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2628
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 489-489 (2014).
XX
DR   [2] (Consensus)
XX
CC   >94% identical to consensus. ~615bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           594..2627
FT                 /product="Penelope-5_SIn_1p"
FT                 /translation="KTLLKVETNPXTSTNNKWFVNISKTEIPPSVSNLLQL
FT                 GGNFCLPPNKKTSITEFIKDIESNRCIQKERGEIRNSVIPLLHNFLHNNSS
FT                 LDEVEKELLRMKRATSEFCKSNPNVIFTRADKGNITVAMDRLDYINNMEQL
FT                 LHDKETYSIIKNNPIKKVEKDLNTTIKRWYDXDFISKQSYFSLHSSDSTIP
FT                 KAYGLPKVHKENFPFRIIVSSVNTALYPIAKFLHKIINNSLPFDSRQVYNS
FT                 FDIAKSLSGMKIREEYCLLSLDAKSLFTNIPLDLAMDGIRKRWPSIENNTK
FT                 IPFDEFIFALKFILSSTFFTFNNVFYKQTFGTPMGSPLSPIIANIVLHDLE
FT                 EKALKSINLEIPFYYRYVDDIVMAAPPNSLNFILETFNSFHNRLQFTIELE
FT                 QDRSLSFLDLSLKITDNTIIIDWFHKKTFSGRYLSFFSHHPICHKIGTIYN
FT                 MVDRALLLSHPTFQQKNLELIIGLLLKNGYPLEFIFKYIKIRIKNLFNTKM
FT                 APIITNDQDQTKKDENTKKFIVVPYIRNISEKTTSLLDKNTFTFGYRCINK
FT                 INNFIKVHKDKTERDCSSNVVYKIFCNNCDATYVGQTKRQLRTRAKEHINN
FT                 IKLDPSKHSVITNHRIFFDHSFNWKDIKILDTEENYQKRLISEMIHIKQQT
FT                 NGLNSQNDTDLLHDSYFCLLDSLKDNTNI"
XX
SQ   Sequence 2628 BP; 940 A; 476 C; 415 G; 794 T; 3 other;
     tttttgtgtt ctcatctttt tttgtctggt cttgatcatt tgtggtgatg ggtgtcattt        60
     ttgtattgaa tagatttttt attcttattt taatatattt gaaaataaat tctagaggat       120
     atccgtttta tagaagtagt ccaataatta attccaaatt tttttgttgg aaagtaggat       180
     gagatagcaa tagcgctcta tccaccatgt tatagattgt tccaatttta tggcatattg       240
     ggtggtgaga aaaaaacgat aaataacgac cagagaaagt ttttttatgg aaccaatcaa       300
     tgatgattgt attgtcggtt atttttaatg acaggtccaa gaaacttagg ctacggtcct       360
     gttccaattc aatggtgaat tgtaatctat tatgaaaact gttaaatgtc tcgaggataa       420
     aattgagtga gttcggaggt gctgccataa caatgtcgtc gacataacga taatagaacg       480
     gtatttctag atttattgac tttaacgctt tttcttctaa accgtgcaat acgatattcg       540
     ctataatggg tgataagggc gatcccattg gtgtaccaaa agtctgtttg taaaaaacgt       600
     tattaaaagt ggaaaccaac ccantgacct ccactaacaa taaatggttc gtcaatattt       660
     cgaagacgga aattcccccg agtgtctcga acctgctaca acttggcggc aatttttgcc       720
     ttcctcccaa caaaaaaaca agcataactg agttcataaa agacatcgag agcaatagat       780
     gcattcagaa agaaagagga gaaatccgca actcagtcat tccgttgcta cataattttc       840
     tacacaacaa ttccagttta gatgaggtag aaaaggaact attacgcatg aagagagcca       900
     cntcagaatt ttgtaaatcg aatccgaatg ttatatttac acgcgcagac aaaggtaata       960
     tcactgtagc aatggacaga ttagattaca tcaacaatat ggaacaactc ctccatgaca      1020
     aagaaacata ttcgataatc aaaaataatc ccataaaaaa agtagaaaaa gatctaaata      1080
     ctacaataaa aaggtggtac gacaangatt ttatttcaaa acaatcctac ttctctctcc      1140
     attcaagtga ctccacaatt ccaaaagctt atggccttcc taaggtacat aaagagaatt      1200
     ttccctttag aattatcgtc tcctcggtaa acacggctct ttatccgatt gcaaaattct      1260
     tacacaagat catcaacaat agcttaccct ttgactctag acaagtctat aatagtttcg      1320
     atatcgcgaa gtctctatcg ggaatgaaaa ttagggaaga atattgttta ttatctttag      1380
     atgcgaaatc cctgtttaca aatattcctc tggatttggc aatggacggt attcgcaaga      1440
     gatggccgtc aatagagaac aatacaaaga ttccgtttga tgaatttata tttgctctaa      1500
     aatttatact gtcttccacg tttttcactt ttaataacgt tttttacaaa cagacttttg      1560
     gtacaccaat gggatcgccc ttatcaccca ttatagcgaa tatcgtgttg cacgatttag      1620
     aagaaaaagc gttaaagtca ataaatctag aaataccgtt ctattatcgt tatgtcgacg      1680
     acattgttat ggcagcacct ccgaactcac tcaattttat cctcgagaca tttaacagtt      1740
     ttcataatag attacaattc accattgaat tggaacagga ccgtagccta agtttcttgg      1800
     acctttcatt aaaaataacc gacaatacaa tcatcattga ttggttccat aaaaaaactt      1860
     tctctggtcg ttatttatcg tttttttctc accacccaat atgccacaaa attggaacaa      1920
     tctataacat ggtggataga gcgctattgc tatctcatcc tactttccaa caaaaaaatt      1980
     tggaattaat tattggacta cttctaaaaa acggatatcc tctagaattt attttcaaat      2040
     atattaaaat aagaataaaa aatctattca atacaaaaat ggcacccatc atcacaaatg      2100
     atcaagacca gacaaaaaaa gatgagaaca caaaaaaatt cattgtcgtc ccttacattc      2160
     gaaatatctc tgaaaaaaca acatctttat tagacaaaaa tacatttaca tttggctata      2220
     gatgcataaa taaaattaac aatttcatca aagtacataa agacaaaacg gagagggact      2280
     gcagtagcaa tgtcgtttat aagatctttt gtaataattg cgatgctaca tatgtagggc      2340
     agacgaagag acagttgagg actagagcaa aagagcatat taacaatata aaacttgatc      2400
     cttcaaaaca ctcagtcata acaaaccata gaatattttt tgaccattcc ttcaattgga      2460
     aggacataaa aattctggac accgaagaaa attaccaaaa gagattaatt tcggaaatga      2520
     tacatataaa acaacaaaca aacggactaa actcacagaa tgacacagac cttcttcatg      2580
     attcctattt ctgtttactc gactcgctta aagataacac gaacatac                   2628
//
ID   Penelope-5_TrVa repbase;    DNA;    INV; 2694 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-5_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2694
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 630-630 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           67..2055
FT                 /product="Penelope-5_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MSSKNVPEXVLKVLSLGPKXCFQDHTNKQGKGIRKLA
FT                 ELFNVDDLIANLESKIKYESDDCKKEIRTKTVNVISNFLTGVNSGKTRNIV
FT                 TKKMSPQDVNLLCYLNKSIYEARKFLAENKDLVVIEADKSSKTVILDANVY
FT                 KEKMLLLLNDKNTYRLIKRDLSNTQQLKNNAMVNNWFKNKFIEERIRDNLL
FT                 IKDALPPKIYGLVKTHKPNMPLRPIVSCIQSPFYQMSKYLVNILSKIVGKN
FT                 KYHIKDSFQFQRSIKHLKVPENHILASFDVVSLYTCIPIDLAIKVVEKNWA
FT                 KIKSHTKLPQSEFLYALKVCLNSTFFQYEDHFYEQIEGLAMGAPVSACIAN
FT                 LVMEHVESEVLSKCKGKFQYYKRFVDDSIICVHKDKCQEVLDQFNSYHPSF
FT                 KFTSEVEKNLSLNFLDLTIDHKLGTKIQTQWYQKSIHSGRYLNYLSAVPFH
FT                 QKVNVVKNIVSRVLNLTDKCYIKERLNVVEQLLLSNGYPLIFLKKQMRECH
FT                 FMIKNKVKNVPKTQFVAEKVIKMSYVSGLSETLKKKLEPFGMQAVFKNRPV
FT                 GLFSRLKAKVPTVKKSNVVYQINCKDCPGTYIGHTKRYLQDRIKSHKYDKN
FT                 EKTALHQHALDNDHIFDFDNPSILVNEKNMQARLIHEAIQIKKCPTAVNSR
FT                 SDTQCLSSMYQPFL"
XX
SQ   Sequence 2694 BP; 848 A; 401 C; 451 G; 990 T; 4 other;
     agagctcagc atacttctac wgatgttaat aatttccatg tgtgttggaa aaaatggatc        60
     atcaatatgt ctagtaaaaa cgtccctgag amkgtattaa aagttctatc tttagggcca       120
     aaawtttgtt tccaggacca cacaaataaa caaggaaaag gaattagaaa attagctgaa       180
     ctctttaatg ttgatgattt gatagccaat ttggagagta aaattaagta tgaatcagac       240
     gattgtaaaa aagagatcag gactaaaact gtaaatgtaa tttctaattt tttaacgggt       300
     gtaaacagtg gcaaaactcg taatattgtt actaaaaaaa tgagtcctca agatgtaaat       360
     ttactgtgtt atctgaataa gagcatttat gaggctagga aatttttagc agaaaacaaa       420
     gacttagtgg ttattgaggc tgataaaagt agtaaaacag ttattttaga cgctaatgtg       480
     tataaggaaa aaatgttatt gttgttgaat gacaaaaaca cctatcggct aattaagaga       540
     gatttatcga atacccagca gttaaaaaat aatgccatgg ttaacaattg gtttaaaaat       600
     aaatttattg aagagcgtat tcgagataat ttgcttatta aggatgctct accacctaaa       660
     atatatggtt tagttaaaac acataagcca aacatgccat tgagaccgat tgtaagttgt       720
     attcagtctc cattttatca aatgtctaag tatttagtaa atatactatc aaaaattgtc       780
     ggtaaaaaca aataccacat taaagattct tttcaatttc aaaggtctat aaagcaccta       840
     aaagtacctg aaaatcatat tcttgcatct tttgatgttg tatcgcttta tacttgcatt       900
     cctattgatc tagctattaa agttgttgaa aaaaattggg ctaaaattaa atcgcataca       960
     aagttgccac aaagtgaatt tttgtacgct ttgaaagtgt gcttgaattc cacttttttc      1020
     caatatgaag accattttta tgaacaaatt gaaggcctgg caatgggtgc tccggtatca      1080
     gcttgcatag ctaatctggt catggagcac gttgaatcag aagtgttgtc caaatgtaaa      1140
     ggaaaatttc agtattataa gagatttgtc gacgattcta ttatatgcgt acataaagat      1200
     aaatgtcagg aggtcttgga tcaatttaat tcgtaccatc catcttttaa gtttactagt      1260
     gaagtagaaa aaaatttgtc tctaaacttt ctcgatttaa ccattgacca taaacttgga      1320
     actaaaattc agacgcagtg gtaccaaaaa tctatacact ctggaagata tcttaattat      1380
     ctctccgctg ttcctttcca ccagaaagtt aatgtcgtta aaaatattgt gtctagggtc      1440
     ttgaatttga ctgataagtg ttacattaag gagcggttaa atgttgttga gcagctgtta      1500
     ttatcgaatg gatatcccct tatttttctt aagaaacaga tgagggagtg tcatttcatg      1560
     attaaaaata aggttaaaaa tgttcccaaa acgcagtttg tggctgaaaa agtaattaaa      1620
     atgtcttatg tttctggctt gtcagaaacg ttaaaaaaga aattggagcc ttttggcatg      1680
     caagctgttt tcaaaaatcg tcctgttggt ttgttctctc gacttaaagc caaggttcct      1740
     actgtaaaaa aatcaaatgt cgtttatcaa attaactgta aagattgccc tggcacgtat      1800
     ataggtcata caaaaaggta tttgcaggat cgaattaagt ctcataagta cgacaaaaat      1860
     gagaaaaccg cgcttcacca acatgctctc gataacgatc atattttcga ttttgataat      1920
     ccctctattt tggtaaatga gaaaaatatg caagccaggt taatccacga ggctattcag      1980
     attaagaagt gtcccacagc tgtcaattct aggagtgata cccaatgcct cagttctatg      2040
     taccaaccat ttttgtaaaa gttttgaaaa tccttttttt tttttttttt tttttttttt      2100
     tttggtaatc ctgctgcatc actgctttta cttggatgta tcgtctggtg cgccctcttt      2160
     cttatttttt tataactagt tttaatgcgc atgcgcactt tttcttgtag ttgtgtcgcg      2220
     cgaattttcg aatcttgctg ttaattatca tttatgctct cttgtgtttt attttataat      2280
     tagctctgta agcgcactct gtgttttttt cctagaaatt gtgttctatt tatttatttt      2340
     gatttccaac tttgtctgtt attcatttac tttttaattc tttattgctt ttccacttga      2400
     ttgtttccca tttttatcat gtgcaattat gttcttttgt ttatttctta gtttgtgttt      2460
     attacttatt tcttagtttg ttcctttgtt ttggctatgt ttattttgta taatttttct      2520
     gaagaaggcg tatggacgtc gaaacgttaa aaaaaataaa ataacatcac aattaaaggt      2580
     cggatcattt tattattttt attatgattt aattttcccc tttttatttg ttttattttt      2640
     ggctgaacag ctcattttta ttgttttata attatttaca gccattttta ttgt            2694
//
ID   Penelope-60_LMi repbase;    DNA;    INV; 2151 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-60_LMi.
XX
NM   Penelope-60_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2151
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 229-229 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(269..778,721..1560)
FT                 /product="Penelope-60_LMi_1p"
FT                 /translation="VGIINSVDLVNKIKDMPIPHSAKLVSFDVSSLFTNIP
FT                 IKECLDVMTDLLYRAGVNPVQVDDIKLATQTCLQQNYFQFQGTIYKQIDGL
FT                 AMGSPLSPLLAEIFMDHFEKHFLHNEPLSDKVKYWYRYVDDVLCLWTGTNR
FT                 QLNTFLEHLNSNHQKIHFTMELGKNPSISWTSPKDTFHYGAWEKSINFLDL
FT                 NIDITTNTHIFKIYRKPTTTDTVIPSCSQHPIAHKHAAFHSMVHRLTSIPL
FT                 SKQDFQTELNTIKYIACNNGYRPQLIDNILERKQRRKVLPLLYSPTSETVI
FT                 TKTNWCTIPYLGKLSTKIARILKSCKYRTSFYVRGTAANILFNSKGTRDAL
FT                 SNSGVYKITCNDCSKLYIGQTGRAIEIRLTEHERSWRLQKADSTFADHVLK
FT                 EGHSYQVHTEVLHIANKGRKLNLLEALEINKHLAKNPQLVLNDQVQLSTSP
FT                 LLSFT"
XX
SQ   Sequence 2151 BP; 798 A; 469 C; 320 G; 563 T; 1 other;
     accttccaaa tactcgccaa agatcctacc aaaaccttta gtgatgaaat taaaaaccta        60
     accaaaacct gtaaaagcta attcctgaat atgaagccaa gtatttagta aacatgaacc       120
     cagtggcccc taaattgtgt ggactcccta aattacacaa ggaaggacat cctttamgac       180
     ctcttgtacc agcctatact gcaccaagct acaaaattgc caaggaatta cacttctgca       240
     tcaaaaccaa aacaaaattc aaatctaagt tggaataata aattcagtgg acctggttaa       300
     caaaattaaa gatatgccta tcccacacag tgcaaaactt gtatcctttg atgttagcag       360
     ccttttcaca aacataccaa tcaaagaatg tcttgatgtt atgacagacc tactttacag       420
     ggcaggtgtc aaccctgtac aagtagatga cataaaactg gctactcaaa catgcctaca       480
     gcaaaactac ttccagttcc aaggtactat atacaaacag attgatggat tagcaatggg       540
     atcccccctc agccccctat tagctgaaat ctttatggac cactttgaaa aacattttct       600
     acataatgaa cccctcagtg ataaagttaa atattggtac agatatgtgg acgatgtact       660
     gtgcttgtgg actggcacca atagacaact caacaccttc ctagaacatc tcaactctaa       720
     tcaccaaaag atacatttca ctatggagct tgggaaaaat ccatcaattt cttggaccta       780
     aacatagata ttaccacaaa cacacacatt ttcaaaattt acagaaaacc cacaacaact       840
     gacactgtaa taccatcatg ttcacaacat ccaatagcac acaaacatgc tgccttccac       900
     tccatggtac atcgccttac atccatacca ctatcaaaac aagattttca aacagaatta       960
     aataccatta aatatattgc atgcaacaat ggctatagac ctcaactaat agataacatt      1020
     ttagaaagaa aacaaagaag aaaagtccta cccctcctct attcccccac ttcagaaaca      1080
     gtcatcacta agaccaactg gtgtactata ccatatttag gaaaattatc taccaaaata      1140
     gccagaattc tcaaatcctg taaatacaga acttcatttt atgtaagagg cactgcagct      1200
     aacatcctat tcaacagcaa aggcacaagg gatgcattaa gtaacagtgg ggtttataaa      1260
     atcacatgca atgactgcag caaactgtat ataggtcaaa caggcagggc aattgaaatt      1320
     agactgactg aacatgaacg tagctggaga ttacagaaag cagactccac ctttgctgat      1380
     cacgttctga aagaaggaca cagctaccag gtccacacag aagtgcttca catagccaac      1440
     aaaggcagga aactaaacct gttagaagca ctggaaataa acaaacattt agccaaaaat      1500
     ccccagctag tgctaaatga ccaggtacag ttgagcacat ccccactgtt aagcttcaca      1560
     taatgtaaac aaaacagcta cctaccacag accatcttaa tgtcacatgt agagtcccca      1620
     ttcctaccat gtttactttt agactttaag ataaaacaat atatataata aattgcacag      1680
     taatatgaaa tgtaatttaa atatgtgaat cttgccagat gctgtcaaat aagtaaattg      1740
     taaactcagt gtagaaaacg tatttaatgt acaccttaag tgacgatctc aacatatgct      1800
     acagtgtcaa taatgttaac atagttttta attcattaat atttgatatg taatgtgttt      1860
     caccctgttc actcgcaaat tacaatgtaa aaatgttaag gaggccactg attacgtgaa      1920
     cataattcta catggcaaca gatattgttt gcaattccaa caaatgtcat atgcaaagac      1980
     cgagtattct gtgtgttgta tctttgtttt accatctttg agaacctaag caatagcgtc      2040
     tttgtcgacg catgtcaaca gtttacctga tgatggccta ataagccgaa aactagttag      2100
     taaataaaca aaaaattagt agaacaaaaa cagtttgttt gcaaccttaa a               2151
//
ID   Penelope-62_LMi repbase;    DNA;    INV; 2059 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-62_LMi.
XX
NM   Penelope-62_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2059
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 230-230 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           245..1420
FT                 /product="Penelope-62_LMi_1p"
FT                 /translation="NTKKVTIPEISELVDLLELVLSHNYFSFNNKIYQQNE
FT                 GLAMGNCMSSFLADVFINNLENKLFRGKNKVTEKIVYYRRYVDDTLLLFDG
FT                 TKEELEELLTLFNSLHRKIKFTIEHETNKTINFLDITITNEQQEHNFYIYR
FT                 KPTYTDITIHQSSHHANTHKYAAFRSMLHRAHTVPLKPKALKEEIDTIKTI
FT                 ASNNGYSEKSIDKLSRKIQANITNKNAVNKTTNKTQIFASIPYLGTASQKI
FT                 ANLFKNTNITISFSTNNKLGHHLPHTVNKNTPITEHSGIYKLQCNSCPAFY
FT                 IGKTGRTFHTRYKEHTDAFRLNHFDKSTIANHLYLNKHKLIDIHSNLTVLH
FT                 KQINGKKLDLLEQLEILLHKEKYTENMLNEQTEFSSHSFFSNFKSFFSW"
XX
SQ   Sequence 2059 BP; 838 A; 382 C; 257 G; 581 T; 1 other;
     cacagtctaa gagtcacaaa aataatgctc caattagact aattgttaaa agaatacact        60
     gcatataaat tgtmacagtt gcaaaataat atttgcagag aattttatac ctacacaata       120
     aaaaaataga tgaaaaattt aaaacttcgt tctcaagcca gatttgcatc atttgacatt       180
     gtcaatctat tcacaaatgt acccgttaaa gagacaatag aaattattag agaaaacctt       240
     ataaaacaca aaaaaagtaa ccataccaga gatttcagag ttggtagacc tacttgaact       300
     tgtactatcc cacaactact tctcattcaa taataaaatc taccaacaga atgaaggttt       360
     agctatgggt aactgcatgt caagctttct agctgatgta ttcatcaaca atctagaaaa       420
     taaattattt agaggaaaaa ataaagttac agaaaaaatt gtgtactata gaaggtatgt       480
     ggatgacact ctgctcctgt ttgatggcac taaagaagaa ctcgaagaac ttcttacttt       540
     attcaattca cttcacagaa aaataaaatt cacaattgaa catgaaacta acaaaaccat       600
     aaatttctta gacataacaa ttacaaatga acaacaagaa cataattttt acatttacag       660
     gaaaccaact tacaccgata tcacaataca ccaatcgtca caccatgcaa atacacacaa       720
     atatgctgca ttcagatcca tgttacacag agcacacaca gtacctttga aacctaaagc       780
     actaaaagaa gaaattgata caatcaaaac aattgcatct aataatgggt actcagaaaa       840
     atcaatcgac aaactatcaa gaaaaataca agctaacatc actaacaaaa acgcagtgaa       900
     taaaaccaca aacaaaacac aaatctttgc aagtattccc tatttaggca cagcatcaca       960
     aaaaatagcc aacttattca agaacaccaa tattacaata tctttctcca ctaacaacaa      1020
     actaggacac cacttaccac acacagtgaa caaaaacact ccaattacag aacacagtgg      1080
     gatatataaa ttacaatgta acagctgccc tgcattttac ataggcaaaa ctggaagaac      1140
     tttccacaca cgttacaaag aacacactga tgcttttaga cttaatcatt ttgacaaatc      1200
     cacaatagct aaccatctat accttaataa acacaaacta attgacatcc acagtaacct      1260
     aacagtactc cacaaacaaa taaatggcaa aaaacttgat ttacttgaac agttagaaat      1320
     attgttacat aaagaaaaat atactgaaaa catgttaaat gaacaaacag aatttagcag      1380
     ccacagtttt ttcagtaatt tcaaaagttt tttttcctgg taacacaaat acttagcatt      1440
     acaaagcaat tgccaaccta caaccataat taatgtttct acaaacctct tataaaataa      1500
     taccagttta taaatttata atgtggaaaa tttaacataa aaatctgtat cttttttata      1560
     tataaaaaac aaacatcttt atgtatataa aattaaacac cttgatttgt atagagaatc      1620
     ttagtaatat agaagtggaa catcttcata gctgtaagtc tttgagttgt tgttattcca      1680
     caatgtgtct caagatggga agtgtttgtg ttggtgatta tttatacata caaatgtact      1740
     ccaggacaga caattatcat actgcaccag acttatttgt gcaccacttt ttaataagta      1800
     agtcaattgt taaatctctt ttattatatg aacctgtttt taaaaatttt ccatattgtt      1860
     acaacctatg ttttgatctt aacaggccca ggcctttaaa catgtataaa aatcatagag      1920
     gcacctgatg atgagccctc agggctcgaa atgcattgtg tacaataaaa cacaattttt      1980
     gtgactgaag gcgagttcat tttattttac tgaagtacaa cgtcacggaa gtatcactgg      2040
     caataatgga caaattaag                                                   2059
//
ID   Penelope-63_LMi repbase;    DNA;    INV; 3066 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-63_LMi.
XX
NM   Penelope-63_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3066
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 231-231 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(303..515,499..759,729..1469,1442..2437)
FT                 /product="Penelope-63_LMi_1p"
FT                 /translation="METGKRKAQALDYLTGSANILMIYENNKCNVGKPDTT
FT                 TKLNKLRDLSLRSITVRWTLNSRSSVNLTDLFQCRIYFNARQSAVLEKGMK
FT                 YSVQPRMQERLITSLAADVKIALDSSNCSKQSKLKLSCKASDIIQKALTKL
FT                 HRTLIQYFKINYEKTRQTQNQLRKNQTNAIIVRADKGNTGVVIHKADYINK
FT                 TLAFFEENGIEMIDSDPTANYSRELKNYLESCLYIIPPEELFKLKVMNPRA
FT                 PTLRAQIKTHKINYPIRPVINGIRNPGEPASKFLLRLLKKLLLPEESFTLR
FT                 NRKQLVDLLHNQMFPDGCYLLSLDIKNLYTNVPLEQTIDIIQQNLSMKENL
FT                 LPDEIAEIVSLLRLLTTYNYFSFNNSFYKQNDGLAMGSCLSGFLADIFVNH
FT                 IESQYFQQKLQISILPTKTPISRKILFYKRYVDDILIIFNGTLAEVTVLAH
FT                 EFNNLHPKLTFTHEIMNSSGVLNFLDLQLQLAENKVVFQIYRKPTTSDSVI
FT                 HASSCHPWQYKMSFFKSMINRIFEIPLSETSVNKELNNLEYIAEMNGYNPS
FT                 LVRKMYNKKRSKDVPQLHSVTPDDEVKRIPIPFMGYFSYDLAKLFRGTNVQ
FT                 VVFSSPLSIQQILPHNEQANKDRYLSSGVYKLQCPECPAEYIGQTGRTFKV
FT                 RFTEHLLTKKGQLKKHSPFAEHTKASDHQQPTIDNMQILHIAQKGRKLNLL
FT                 EEFEIAKRAYFGHPHLLNDQLACKDQTFLDIMMSLFK"
XX
SQ   Sequence 3066 BP; 1015 A; 686 C; 511 G; 854 T; 0 other;
     tgtaattccg ccttgtaatt tttgtgtaaa ttcttcacgc agataatctg aagatgccct        60
     gctaaagggc gaacgcgtca ttaactaata aaagttgcaa tcaagacggt ttgaggaata       120
     tttattctaa gtgattgctg atgtacacct ggctggaaat cattttatat gaacctgctt       180
     gtcggctgca agaatggtgc acatcctgca gaagatcaag cacaagatta tgaagacatc       240
     aatgaacatt tttacagaag cagtgttttc tgtgcacacc cataaatatc gaacgttaag       300
     aaatggaaac cggtaaaaga aaagcgcaag ctttagacta tttaacggga tctgctaata       360
     ttttgatgat ctatgagaat aataaatgta acgtgggaaa gcctgatacc acaactaagt       420
     tgaacaaatt aagagattta tctctccgct caataaccgt ccgatggact ttgaattccc       480
     gatcgtctgt aaatttgacg gatttatttc aatgctaggc aaagcgctgt actagaaaaa       540
     ggcatgaagt acagtgtaca accacgtatg caggagaggt tgattacttc gttagctgca       600
     gatgttaaaa tcgcactaga cagttctaat tgttcaaagc aatccaaact caaattatcg       660
     tgtaaggcta gtgacatcat ccagaaggcg ttaacaaaac tccaccgtac tctgattcaa       720
     tattttaaaa tcaattacga aaaaaccaga caaacgcaat aatcgtgcgg gccgacaaag       780
     gcaacacagg agtcgtaata cacaaagcag attatattaa taagaccttg gctttctttg       840
     aagagaatgg catagaaatg atagattctg accccactgc aaactactcg agagaactaa       900
     aaaattacct tgaatcgtgc ctctacatca tcccccctga agaactcttc aaactaaagg       960
     ttatgaaccc tagagctcct acattaagag cccaaattaa gacccacaaa ataaactatc      1020
     ctatacgacc tgtcattaat ggaatccgaa atccgggaga gcctgcctct aaatttctgt      1080
     tacgtttgtt gaagaagcta ctgctccctg aagaaagttt tactttgcgc aatagaaaac      1140
     aactagtgga tttattgcat aaccaaatgt ttccggatgg ttgctatctc ttgtcattgg      1200
     acataaaaaa tttatatacc aatgtacctc tggaacaaac catcgacatc atccagcaaa      1260
     acctctccat gaaagaaaac cttcttccag acgaaattgc tgaaattgtg tcactattac      1320
     gactacttac cacatacaac tacttttctt ttaacaactc cttttataaa caaaacgacg      1380
     gtttagccat gggtagttgt ctgtcaggtt tccttgccga tatatttgtc aatcacattg      1440
     aatctcaata cttccaacaa aaactccaat aagcagaaaa atactcttct acaagagata      1500
     tgtcgatgac atcctgatta ttttcaatgg taccctagct gaagtaacag ttctagctca      1560
     tgaattcaac aacttacacc cgaaactaac ctttacacat gaaataatga actcctccgg      1620
     tgtcttgaat tttttggacc tacagttaca gttagctgaa aacaaagttg tattccaaat      1680
     ctataggaaa ccgaccacaa gtgactcagt catacatgca tcttcatgcc atccatggca      1740
     atacaaaatg agctttttta aatcaatgat taacagaatt tttgagattc ccctttctga      1800
     aacttccgtc aataaagaac taaataatct tgaatacatc gccgaaatga atggttacaa      1860
     cccgtccttg gttcgcaaaa tgtacaataa aaaacgttct aaagatgtac cacagcttca      1920
     ctcggtaaca cctgacgatg aagttaaacg tatccccatt cctttcatgg gatatttttc      1980
     ttatgacctg gctaaactct ttcgtggcac aaatgtacaa gtcgtattta gtagcccttt      2040
     gagcatccag caaattctcc cacacaacga acaagccaat aaggacagat acctttcctc      2100
     gggagtctac aaactacaat gtcccgaatg cccagctgaa tatataggac agacaggccg      2160
     gacctttaaa gtacgtttta ctgagcacct tcttacaaaa aaaggccaac tcaaaaaaca      2220
     ttcccctttt gcggaacaca ctaaagcatc cgatcatcaa caacctacca ttgacaacat      2280
     gcaaatctta catattgcgc agaaggggcg taagctaaat ttactggaag agtttgagat      2340
     agcgaagcgc gcttactttg gacacccaca cctcctaaac gatcagttgg catgcaaaga      2400
     tcaaacattc ctagatatta tgatgtctct gttcaaataa aattcctctc atttacaaat      2460
     accaacataa attattaact tctgtcctgc ttaataacct ccctttcgtt aaatttgtat      2520
     tcagatagct agatttcacc cgtcccgtct tatacaccgg cttcctatgt cactccctac      2580
     ccacattccc ttagttagtc tgtacaagtc ggcggagcag cacaccacgc ccgcccaccg      2640
     cccgtgagcg caattgtaaa catgggctta tcttgtgtca tcagagacca ccgcttctat      2700
     taaggtaatc ttaaaaatcg gttttatgtt tctcacatct ttaccgagta tgttccaact      2760
     gtaattcgtt gttacccgat catttgtagg gctacaagga aatccaaaaa ttccagaaaa      2820
     atagaaacac cgcaataaca acttacggtg tcacaccacg gagagcgcat tgtaagcttt      2880
     gtttaccatt tatactgtct tcttaacaca aaataagccc atgtaccatt atacccgttt      2940
     gtaattccgc cttgtaattt tgtgtaaatt ctgtcacgca gataatctga agatgccctg      3000
     ctaaagggcg aaacgcgtca ttaactaata aaaaatttgc aatcaagacg gtttttgaag      3060
     gaatat                                                                 3066
//
ID   Penelope-64_LMi repbase;    DNA;    INV; 2800 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-64_LMi.
XX
NM   Penelope-64_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2800
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 232-232 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..2349
FT                 /product="Penelope-64_LMi_1p"
FT                 /translation="MNLTNTQLTENEKELLEKGLKYNINTNIDEXYIEDLI
FT                 IQSEAVLKREERNENNNVNTGLTRELIKNEIHKIITDMKQQNNKNKKGPDS
FT                 ITLKNXIIXRADKGGTVVLMDKQQYIEKTNDFISQSNIKKLKSDPTNRFQT
FT                 KVKNTLKAIDYTLDDTEKRKLIQNNPTAPNLRCQPKVHKPNIPLRPIVNFK
FT                 NAPTYKLAGHMLKVLSETYQMKDDRTINNTSHLIQLIKDTRIPDSATLLSF
FT                 DIENMYTNIPVDETINIIEQNLKENSQLPDEHIKEIHLLLKLITEQNYFQF
FT                 NNEYYLQEEGLPMGSPVSGTLANIFMNHVESMIFKKVTTKNYKILYWIRYM
FT                 DDILCLIDEPPERIDQLHADINTIHKKITFTIEKEHNNQINFLDITIKKEN
FT                 NKHTFDIYRKPTTTDTIIHQTSNHPHAQKQSAIRYMLHRLNTVPLSKENYQ
FT                 KELDIITQIATNNGYNSNIVEKLNKKIKKQIRAKNTKHADPQTTTQQSSTQ
FT                 THTTQTAVQRTHENKKENSRWYTMTYKHKLTHKITNIFKRQGIKIALKTDN
FT                 PIQKYIPKIKKDTDIYQRAGIYQLQCNSCDGRYVGQTSRTFDTRYKEHIRA
FT                 WKYGTSHSTFAEHLKEYNHKPTTIEKDMKVIRINNEKHLLTLQENYHIYKT
FT                 KAEKKLLLNDQINLTNQSLFSLIDHMIDTNPNT"
XX
SQ   Sequence 2800 BP; 1268 A; 597 C; 387 G; 545 T; 3 other;
     gttcgtctag tgctcagaaa gccaagcaaa cagcacaaaa atatgattaa aattctaaac        60
     aaagccttat actcaaagaa acaaacttat ctcaaaaatt attcaacaca atgtacaaca       120
     acaaaactta acatgcggct gttttctcag atctggccaa caaggtcgaa agttacacag       180
     acattgctgt agaagaaact gtggaaaaca caagaaggag ataacacagc tcataaggac       240
     aaacactcca caaaaataaa ctgtaaacag ccaagacaca cacaccaatt ttacccaaga       300
     ctaatgaacc tcacaaacac acaactaact gaaaatgaaa aagagctatt agagaaagga       360
     ttgaagtata atatcaacac aaacatagat gaggwataca tagaagacct gataatacaa       420
     tcagaagctg ttttaaaacg tgaagaaaga aatgaaaaca acaatgtaaa cactgggtta       480
     acgagggaac ttataaaaaa cgaaatacat aaaatcataa cagacatgaa acaacagaac       540
     aacaaaaaca aaaaaggtcc cgattccata acactcaaaa acwccatcat ttscagagca       600
     gacaagggag gcacagtcgt tttgatggac aaacaacagt atattgagaa aacaaatgat       660
     ttcatttctc aaagtaatat taaaaaatta aaatcagacc caacaaacag atttcagaca       720
     aaagtaaaaa acaccttaaa agctatagac tacacactgg atgacacaga aaaaagaaaa       780
     ttaattcaga ataatcccac tgcaccaaac ctccgatgcc aaccaaaggt acataaacca       840
     aatatcccgt tacggcccat tgtgaatttc aaaaatgctc ccacttataa acttgcagga       900
     cacatgttga aagtactatc agaaacctat caaatgaaag atgacagaac catcaacaac       960
     acctcacact taatacaact cataaaagat acaagaatcc cagactcagc tacccttctt      1020
     tcctttgaca tagaaaatat gtacactaac ataccagtag atgaaacaat aaatatcata      1080
     gaacaaaatc taaaagaaaa cagccaacta ccagatgaac acatcaaaga gatacactta      1140
     ttgctaaaat tgataactga acaaaactat tttcaattta ataatgaata ctacctgcaa      1200
     gaagaggggt tacccatggg atcaccagtg tcaggtaccc tagccaatat tttcatgaac      1260
     catgtagaaa gcatgatttt taaaaaagtt accacaaaga actataaaat actctactgg      1320
     atcaggtaca tggatgacat cctctgccta atcgatgaac ctccggaaag aatagaccag      1380
     ctccatgcag atataaacac catacacaaa aaaataacat tcacaataga aaaagaacat      1440
     aacaaccaaa taaacttctt ggatataacc atcaaaaagg aaaacaacaa gcataccttt      1500
     gacatttacc gtaaaccgac aacaactgat acgattatac accagacctc caatcaccca      1560
     catgcacaaa aacaatcagc aatcagatac atgctccaca gactcaacac agtaccactc      1620
     agcaaagaaa attaccaaaa ggaactagac atcatcacac aaatagcaac aaacaatgga      1680
     tacaatagta atatagtaga aaaattaaac aaaaaaatta aaaaacagat acgggcaaaa      1740
     aacaccaaac atgcagaccc acagacaaca acacagcaaa gcagcacaca aacacacaca      1800
     acacaaaccg cagtacaaag aacacatgaa aacaaaaaag aaaattcaag atggtacaca      1860
     atgacataca aacacaaact aacacataaa ataacaaata ttttcaaaag acaaggcata      1920
     aaaatagctc tcaaaacaga caacccaatc caaaaatata tcccaaaaat caaaaaagac      1980
     acagatatct accaaagagc tggaatatac caactacaat gcaactcatg tgatggaagg      2040
     tatgtaggac aaaccagcag aacatttgat acccgataca aggaacatat cagggcatgg      2100
     aaatacggga caagccactc cacttttgca gaacatctga aagaatataa ccacaaaccc      2160
     accacaatag aaaaagacat gaaggtaatt agaataaata atgaaaaaca tctcctaaca      2220
     ttacaagaaa attatcacat atataaaaca aaagctgaga aaaagttgct actaaatgac      2280
     caaataaacc tgaccaatca atcactgttc tcactgattg accatatgat agacacaaat      2340
     cccaacacat aatcacaacc cccccaccac acacacacac acacacacac acacactttc      2400
     aatgaaacag ttgaatttca aataagctaa ggttggcaac actacaaaac aaactacagt      2460
     ggacacagta tggcagcaga tgacagtgga accagaaaaa tgcgagtgtt tcagaaaaca      2520
     gtgaactttc gacctggttg ccagaaagag actgatgtgg agtagcaagt gctgtaagta      2580
     caccatttta tagcaaaaaa cgaactgttt taaatcagaa acgaaatgtt ttgtacatat      2640
     gtaagaacct aacctatatg tgtaaacaga aacatgtaaa tatttcagga cacccactga      2700
     tgatgccttg gagaaaggcg aaacgcgtat gggtgacatt ataaaaataa aacccttcat      2760
     ttgcagtagc aaaaggcgtt tctttaaaaa cattacagtg                            2800
//
ID   Penelope-65_LMi repbase;    DNA;    INV; 3300 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-65_LMi.
XX
NM   Penelope-65_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3300
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 233-233 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(549..602,571..1038,1055..1621,1558..2193)
FT                 /product="Penelope-65_LMi_1p"
FT                 /translation="METKEYIEKTKISSPKTTKKRRFHHQKQHKKAKIKPN
FT                 QQIPNPGQKHTQKHRIYTFRQEKNRELCKKNPQAPNMRCQPKVHKNLTPLH
FT                 PIVNFRTAPTYLLSKEMQSQLTQYYTIENDRTVKNTTQLIQNIRDINIPNT
FT                 ATLLSFDVESMYSCIPVNETIRLIEENLKTHSQLPNNKIVRTNNKKNYFEF
FT                 NGDYYIQEDGLPMGSPISGTLANIFMNHIEKIIFEDIVTKQNYNIIYWYRY
FT                 MDDIICMVDEPKNKIQQLHKDINTIHKNIKFTIEEEQKDTLNFLDITITKE
FT                 NHTHTFDIFRKPTTSDIIIHATSNNPQSHKQAAIRYMLNRLNRIPLNTSNY
FT                 QKELAIIKQIALKMATKKPLLPKRASYYKTNSTKNGYEETLVDKLNRKIKT
FT                 QLKKKPTQTTLTQTNSTHNKKWHTLTYHNKFTYKIGNIFKKQGINIAYKTS
FT                 NPIQKHTPKLKPKTDKYQQSGIYQLNCRDCDNIYIGMTGRTFDTRYKEHIR
FT                 AWKYGTNHSTFADHLKQEHHRPSTIEKDMEIIQTSRDRHLLPFQENLHIHK
FT                 ALSHNKQLLNDQINIGNQTLYKIIEKIT"
XX
SQ   Sequence 3300 BP; 1422 A; 796 C; 385 G; 697 T; 0 other;
     tatacgaaat ccaccttcag atagcgcaaa aattaaacaa ccctgctatt ttcgcttcca        60
     tcatggaaaa agtcgaatgt tgcacatgca gagcagtaga taatatgcgc ctaaaacatc       120
     aaaagaaaat aaaaaatctc aaactacatc acacaaaacc taaaacaaca gtcacacata       180
     cacacacaac tttacccaag agttatcaac ctcacaaatg taacattaaa taaagaacaa       240
     caactcctag aaaaggtcta aaacacaatt tgactcgcca gcaaatgaaa gcaaatagaa       300
     aatctcattg tagaagctga gtacatcctc actacagaag aaaaaaaacg aaaatagtac       360
     tgtaaataca gggcttacta gggaattaat aaaagatgaa attaaaaaca tagcaacaca       420
     aattaaaaaa agattctaat aaatttaata atagttgtga tgaaacaaaa cttaaaaatc       480
     taaagaaaaa attgcaggca gaaaacatta tcataaccaa atcagacaaa ggcaatagtg       540
     ttgttctcat ggaaacaaaa gagtacatag aaaaaacgaa gatttcatca ccaaaaacaa       600
     cataaaaaag ctaaaatcaa acccaaccaa cagattccaa acccaggtca aaaacacact       660
     caaaaacata gaatatacac tttcagacag gagaaaaaca gagaattgtg caaaaaaaat       720
     cctcaagcac ccaacatgag atgccaacca aaggtccata aaaatcttac ccctctccat       780
     ccgatagtaa atttcagaac agctcccaca tacctactat caaaagaaat gcagtcacag       840
     ctcacacaat actatacaat tgaaaatgac agaacagtga aaaacaccac tcaattaata       900
     cagaacatca gagacataaa catccctaac acagcaacac tgctctcttt tgatgtagaa       960
     agcatgtaca gctgcatccc tgtaaatgaa actatcaggc taatagaaga aaatctaaaa      1020
     acacacagcc agctacccta gaacaaatac atgaaataat aaaattgtta gaactaataa      1080
     caaaaaaaac tattttgaat tcaatgggga ctactacata caagaagatg ggctacccat      1140
     gggttcacca atttcaggaa cactagcaaa catcttcatg aatcatatag agaaaataat      1200
     atttgaagat atagtaacaa agcagaatta caacatcatc tactggtacc gatacatgga      1260
     tgatataata tgtatggtgg acgaacctaa aaacaaaata caacaactac ataaagatat      1320
     aaataccata cacaaaaaca taaagtttac aatagaagaa gaacaaaagg acacactcaa      1380
     tttcctagac ataacaataa caaaagaaaa ccacacacac acatttgaca tatttagaaa      1440
     acccaccacc tcagacatca ttatacatgc cacttcaaac aatccacaaa gtcacaaaca      1500
     agctgcaatc aggtacatgc ttaacagact caataggatt cccctaaaca cttctaatta      1560
     ccaaaaagag ctagctatta taaaacaaat agcactaaaa atggctacga agaaaccctt      1620
     gtagacaaac taaacaggaa aataaagaca cagttgaaga aaaaaccaac acaaaccaca      1680
     ttgacacaga caaacagcac acacaataaa aaatggcata cactgaccta ccacaacaaa      1740
     ttcacataca agataggtaa tatattcaag aaacaaggca taaacattgc ctacaaaaca      1800
     agcaacccaa ttcaaaaaca cacccccaaa ctaaaaccaa aaacagacaa ataccaacaa      1860
     tctggtatct atcagctcaa ctgcagagac tgtgataata tatatattgg gatgactggc      1920
     agaacatttg atactagata caaagagcac atcagagctt ggaagtatgg cacaaaccat      1980
     tcaacatttg ccgaccacct gaaacaagaa caccataggc ccagcaccat agaaaaagat      2040
     atggaaatca tacagactag tagagacaga caccttctcc ctttccaaga aaacctccac      2100
     atacacaaag cactatcaca caacaaacaa ttactaaatg accaaataaa tattggaaac      2160
     caaacattgt ataaaataat agaaaaaatc acataaaaca ctccccttca tgcccctaac      2220
     tatctcagtc tacttccaca tctcattcca cataccacta tcaacactcc acagctaatg      2280
     tcaaataaaa tcacataccc acctctccgc taaacatgag actctccgaa catgtcacac      2340
     atattgaaat aaaactccca aactttctcg ctccctgcta acaaccactc aacctcgttc      2400
     ccctcactgt taccctacat cacatactag attcaacaaa aaacacaagt cccaattccc      2460
     cccccccccc aaacacacac acacacacac acacacacac acacacacac acacacacta      2520
     cttgcattac caccacccag aagtttcaat attactgtta cttcttcaca atgaatatac      2580
     agtaccttaa ttatttaata aaagccaact gacaaatttc tcccctctac caaccaccac      2640
     cccacctcct gtccatcact tttgtcttcc atctcacttc acatcccacc ttaccacatc      2700
     caaccaccat tcagtcatct ttccctacta ctcaaccccc cccccccaat aataataata      2760
     aaaaataaat aaaaacgttc cattaattat attttgccac tattccatcc gcttacatca      2820
     aaactaaata cactaaaaca taatttatta taaaacataa aaaagaacta cattcgtgat      2880
     gttggcaaca ctccaataac acactgtgca gactcagtca aaacaaaaac aaacacgtct      2940
     gatctgtgaa aacaattatg ggcagtgcaa aagtgacagt ggaagtagtg gaaaaaacga      3000
     cacagcatga agaaccggcg gtactgcatg aaacagaccg gcattccatg atgtgaagcg      3060
     aaaacaagac aaaatttccg taagtaacaa aacattaggc ctacttttca tgttccgtta      3120
     acgaactgtt ttcgatctaa aaacaaaaca aactgtagat ttctattatt acagaccact      3180
     gaagatgttt tactgtcatt aaaacgaaac gcgtctggtg agaaaaatcg catttttatt      3240
     gtagttgcaa agacggacaa acactgctat tcataagttg tggaagtcaa ctacggacat      3300
//
ID   Penelope-66_LMi repbase;    DNA;    INV; 1687 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-66_LMi.
XX
NM   Penelope-66_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1687
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 234-234 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(74..361,295..1353)
FT                 /product="Penelope-66_LMi_1p"
FT                 /translation="APHSKLEDFIGRLKTLRVQSSDLLVSFDVVSLFTKVP
FT                 LQDSLELIRNMFEEDIVALFEHVLSSTYFLFQDQYFEQVDGVAMGIPLSPG
FT                 GQLFYGGLTSGWCCHGNPSVSWWPIILWRTLKKKLCSQPLSNFLFPGYVDD
FT                 TFVVWPXGLDTLPILQHLNSLHPNIKFTMEVEKDGTLPFLDVLVRRKADGT
FT                 LGHSVYRKPTHTDLYLQATSCHHPAQCGSALRTLVHRARVVSDPESLSSEM
FT                 EHLKTVFRQNGYSERQIHNAFRPKRVQSTEQNEDTNTPSTLAFLPYFGAMS
FT                 SRIGRVLGRYEIKCVFRPSPKLRNLLGSVKDDLGLRKRGVYKIPCQCGAAY
FT                 IGQTCRTVQERCDEHQRHTRLYQPEKSAIAEHCLNTGHRMFYEKTEILSPA
FT                 SSFWDCVIKEAIHIRTSDNLINRDTGFQLSTAWNPALATIKSRQESQNLSI
FT                 TDPP"
XX
SQ   Sequence 1687 BP; 468 A; 383 C; 387 G; 446 T; 3 other;
     caacattggt gaatctactt ctttgctgct aaaatctaac atcactattg ggacccctcg        60
     taggcaagtg tgagcaccac attcgaaact cgaggatttc ataggacgcc tgaaaactct       120
     tagagtgcag tcatcggatc tcttagtaag ttttgatgtg gtatctttat ttaccaaggt       180
     gcccttgcag gactctttag agctcattag aaacatgttt gaggaggaca tagtggcatt       240
     atttgagcat gtgctttctt caacatactt cttatttcaa gaccaatact ttgaacaagt       300
     ggatggtgtt gccatgggaa tccctctgtc tcctggtggc caattatttt atggaggact       360
     ttgaagaaaa agctctgcag tcagccacta tcaaacttct tgtttcctgg atatgtggat       420
     gacacatttg tggtgtggcc amacggwctt gacackctac ccatccttca gcatttaaac       480
     tcgctccatc cgaatataaa attcacaatg gaagtggaaa aagatggcac tttacctttt       540
     cttgatgtct tggtacgaag gaaagcagat gggaccttgg gacacagcgt ctaccgcaag       600
     ccaacgcata cagatctata tctgcaggcc acaagctgcc accatcctgc acaatgtggt       660
     agtgcattac gtacgctggt tcatagagca cgtgtggtat ctgatcctga aagcctgtca       720
     agtgaaatgg aacatttgaa gacagtgttc cgacaaaacg gatattctga gagacagata       780
     cataatgcat tcaggcccaa gagagttcag tccacggagc agaatgaaga cacaaataca       840
     ccttccacct tggcgttctt gccgtacttt ggtgccatgt cgtcgagaat tggaagagtc       900
     cttggaagat acgaaattaa gtgtgtgttt cgaccatctc caaaactgag gaacttgtta       960
     ggatcggtca aggatgatct tggtctgagg aaacgtggag tatataagat cccttgtcag      1020
     tgtggagcgg catatatagg ccagacatgt cgcacagtgc aagaacgctg tgatgaacat      1080
     cagcgtcata cacgcctgta tcaaccagag aagtcggcaa ttgcagaaca ctgtctgaac      1140
     acaggacatc gcatgtttta tgagaagaca gaaattttat ccccggcttc atccttttgg      1200
     gattgcgtca ttaaagaagc aatacatatc cgtacatctg ataatctcat caaccgggat      1260
     acgggatttc aattgagcac agcctggaac cccgccttgg ctactatcaa atcacgacaa      1320
     gaaagtcaaa acctttcgat aacggacccg ccataaattg gtttagttct agtgagtaac      1380
     gtctggcggt actgtttgta aacacagcgt acagcgcacg cgcaaaatag ccgctcttgt      1440
     tttccctgca gatggctctt tagatcgacg ccctctatcg gcaaattatt gcgcatgcgt      1500
     aatttgcgcg tctgcgcagt cttcgcgagc gtgttctata tacagcggcg cccatatgca      1560
     gataccgtca gtcgtacttg gccatcagca aggtgcaacc acctgaagat gtcggacagt      1620
     tgctccgaag aaatattgtg ggatttacac acgttatccg gcggcaaacc cgtgaagact      1680
     atatgca                                                                1687
//
ID   Penelope-67_LMi repbase;    DNA;    INV; 2001 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-67_LMi.
XX
NM   Penelope-67_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2001
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 235-235 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(161..370,306..1355,1352..1774)
FT                 /product="Penelope-67_LMi_1p"
FT                 /translation="REPLLNSEDYHRKISDLLDPTTYKKLKKDLHERVKCY
FT                 QSFDKTVFHSLEVKSILAKRRLAPEIIWATKDTKLKVSLQNGGLPPRLYGL
FT                 PKIHKPDVPLRPIVSAVGAPTQELARHLASLLQPYIGKTENHIKNSLHFIE
FT                 KLRQITVSPSDILVSFDVVSLFTMVPVDEALSYIADMFPTDIVALFRHCLS
FT                 TTYFQYNSEFYEQIEGVAMGSPLSPAIANLFMEYFEQQALRSATKSPSRWY
FT                 RYVDDTFVIWNHGEEDLNDFLVHLNSINPKIKFTMEKESNGQLNFLDVSVI
FT                 KRADGTLGHKVYRKDTHTDRYLHKNSNHHPRQKRGVIKTLVGGANNICEPI
FT                 YLQEELNHLRTAFKKNGYTDNEIDRALHPSRKVSGNRRQQQPSAGKVFLPF
FT                 IHNITDRIGKVLAKFQVETIFRPTRKKINEFLRSAKDARHPLATPGVYKIP
FT                 CSCGMVYIGTTKRSVNTRLTEHKRNCRLGHIDKSAVAEHVFQNGDHEIKFG
FT                 DTSVLARTSHYYTRMYREAIEIHKHQNNFNRKEEGLKLDKIWRSTLHQSRD
FT                 NRLPVIERSDDNHR"
XX
SQ   Sequence 2001 BP; 645 A; 425 C; 443 G; 488 T; 0 other;
     atagagcagg atcgtcttac atcgtattct gtgatgaaat taggatggga cgtccaggat        60
     ctacgcaaag ccaagccacc taccagcaat ttgtctcaag gggaaagaag gcattgcggg       120
     agatgaatgc agacagcaat attatctact tgccgcttaa agggagccac tgctgaatag       180
     tgaagattat cacaggaaga ttagtgacct cctggaccct accacatata aaaagttgaa       240
     aaaggatcta cacgaacgtg ttaaatgcta ccaatcgttt gataaaacag tcttccattc       300
     cttagaagtt aaaagtatcc ttgcaaaacg gaggcttgcc cccgagatta tatgggctac       360
     caaagataca taagcctgat gttcctttga gaccgatagt gagcgcagtt ggagctccta       420
     ctcaagagct agctagacac cttgcctctt tgctacaacc atacataggc aaaacggaga       480
     atcatattaa aaattctctg cactttattg aaaaattgag gcagattact gtcagtccta       540
     gtgacatcct tgtcagtttt gacgtagtat ctctgttcac catggtcccg gttgacgaag       600
     ctctttctta catagccgat atgttcccta ctgatatagt agccttgttc cgacattgtc       660
     tgtccacaac ctattttcag tataacagcg aattttatga acaaattgaa ggggtagcca       720
     tgggaagccc tctaagtccc gcaattgcta atttattcat ggaatatttt gaacaacaag       780
     cgctgcggtc ggccaccaaa agcccttcga ggtggtatcg gtacgtggat gacacctttg       840
     tgatatggaa ccacggtgaa gaggatttaa atgatttcct ggtacaccta aatagtatta       900
     atccaaagat caaattcacc atggagaagg agagtaatgg acaactgaat ttcttagatg       960
     tatcagtaat taaacgggcg gatgggacct tagggcacaa ggtctacaga aaagatacac      1020
     acaccgaccg ttacctgcat aagaactcga atcaccaccc taggcagaag agaggtgtca      1080
     taaaaacact tgtgggcgga gctaacaata tctgtgagcc aatctacttg caagaggaac      1140
     tgaatcattt gcggacggct tttaagaaaa atggttatac tgataacgag atcgaccgag      1200
     cactccatcc aagtagaaaa gtgtccggaa ataggcgaca gcaacaacca tctgctggaa      1260
     aagttttcct cccattcatc cataacatca cggaccgtat tggcaaagta ctggccaagt      1320
     ttcaagtgga aactattttc agacccacta gaaaataaat gaattcttaa gatcagcgaa      1380
     agatgctcga catcccctag ctactccagg ggtatataaa attccgtgta gttgtggcat      1440
     ggtgtatata gggacaacaa aaagaagcgt caatacacgc ttaacggaac acaaaaggaa      1500
     ctgtcgtttg ggacatatcg acaaatcagc agtagcagaa catgtatttc aaaacggaga      1560
     tcatgaaata aaatttggtg atacgagcgt gctagcaagg acttcgcact attatacacg      1620
     tatgtacaga gaggctattg aaatccacaa acatcaaaac aattttaata gaaaagaaga      1680
     aggtttaaaa ttggacaaga tatggcggtc gactttgcac caatcacgtg acaatcgatt      1740
     acctgtaatc gagagaagtg acgataatca cagatagttg catagtcggc agcacgtgac      1800
     gtgtggtggc gccctctgtc tgctctatat aagcggcagc tccaccgcct agaagccagt      1860
     cgtcgactca cctcagaaga tgttgtccgc agttgacaac gaaacgtcag ggggaagaag      1920
     ttttaccgat cgaccacggc aatttagccc ggaagtttta attgacgaca acgccggccg      1980
     tgaaagccta catgttatga t                                                2001
//
ID   Penelope-68_LMi repbase;    DNA;    INV; 2228 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-68_LMi.
XX
NM   Penelope-68_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2228
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 236-236 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(109..543,715..1986)
FT                 /product="Penelope-68_LMi_1p"
FT                 /translation="FVRERTVERRNFFSQRWKFCSHSTKIPTEDIVANIEA
FT                 GIRMLPPHSADEIRMETARILRKAKPPSSNLSQAERKALRDINADKSITVL
FT                 SADKGNATVVLKSEDYHRKISDLLDPTTYKKLKKDPTTKVLNATNQLIKKV
FT                 FHSNRGSHIKNSMHFIEKLKEITVSPGDILVSFDVVSLFTMVPVNEALAYI
FT                 SDLFPTDIVALFRHCLSTTYFQYDNEFYEQIDGVAMGSPLSPAVANIFMEF
FT                 FEQQALQSARKSPLKWYRYVDDTFVIWNHGEEELNCFLKHLNSINAKIQFT
FT                 METESNGQINFLDVSVIKRADGTLGHKVYRKDTHTDRYLHKDSNHHPRQKR
FT                 GVIKTLVDRANKICEPAYLQEELDHLRTAFQKNGYSDKEIDRALHPRRQMS
FT                 ANVQQQPLAGKVFLPFIHNITDRIGKVLAKFRVETIFKPTKKISECLRSAK
FT                 DARHPLATPGVYKIPCSCGKVYIGTTKRSINTRLTEHKRNCRLGHTDKSAV
FT                 AEHVFENGDHEIKFSETSVLAKTSHYYARMYREAIEIFKHHNNFNRKEEGL
FT                 KLDKIWRSLCTKDVTIDYLDRE"
XX
SQ   Sequence 2228 BP; 707 A; 474 C; 505 G; 542 T; 0 other;
     tagatctatg gaacatagtg cagaagtggc ttgcaaagac agaagaagtt tgatcattta        60
     caagcagaca ggacgctcca attacagata atgcaacaca gtaattaatt tgtccgggaa       120
     agaactgtcg agagaagaaa tttcttctct caaaggtgga aattttgcag tcactccaca       180
     aagattccca cggaggatat tgttgccaat atagaggcag ggattcgtat gttaccacca       240
     cattctgccg atgaaattag gatggaaaca gccaggattc tgcgtaaagc taagccaccc       300
     agcagcaatt tgtcccaagc agaacggaag gcattgcggg acatcaatgc ggacaagagt       360
     attactgtac tttctgctga caagggtaat gctaccgttg tgttgaagag tgaggactac       420
     cataggaaga tcagtgacct ccttgatcct accacttata aaaagctgaa aaaggatcct       480
     actacgaaag tgctgaatgc taccaaccag ctgataaaaa aagtcttcca ttccaacaga       540
     ggataaaaaa cacatttgca aaacggaagc gcacgctcca agattgtatg ggctgcctaa       600
     ggtgcacaaa cccgatatcc cgctgagacc gattgtgagt gccattggat ccccgacgca       660
     ggagctggct cgatatctcg cctccatgct gcaaccgtac ataggcaaaa ctgatcacac       720
     atcaaaaact ctatgcactt tatcgaaaaa ctgaaggaga ttactgtcag ccctggtgat       780
     attcttgtca gctttgatgt ggtttctctg ttcaccatgg ttcctgtcaa cgaagctctt       840
     gcttacatat ctgacttgtt tcccactgat attgtagctc tgtttcgaca ctgcctatcc       900
     acgacttatt ttcaatatga taatgaattc tatgaacaaa ttgatggagt ggcaatgggt       960
     agccctctaa gtccagcggt tgctaatatt tttatggaat tttttgaaca acaggcactg      1020
     cagtcagcca gaaagagccc tttgaagtgg tatcggtatg tggatgatac ttttgtgata      1080
     tggaatcacg gggaagagga actgaactgt ttcttaaagc atttgaatag tatcaacgcg      1140
     aaaatacaat ttaccatgga gacggagagt aatggacaga taaatttttt ggacgtttca      1200
     gtaattaaac gggcagatgg gactctgggt cataaagtat acagaaaaga tacgcacacc      1260
     gatcggtacc ttcacaaaga ttcgaatcat catcccaggc agaagagagg tgttattaaa      1320
     acattggtgg acagggctaa taaaatctgt gagccagctt atttgcaaga ggaactcgat      1380
     catttacgaa ccgcatttca gaaaaacgga tacagtgata aggagataga tcgagcactc      1440
     catcccagaa gacaaatgtc tgcaaacgtc caacaacaac ctttggcggg gaaagttttt      1500
     ctcccattca tccacaatat cacggaccgt attgggaaag tactggccaa gtttagagtt      1560
     gaaacaatat tcaaacccac caaaaagatc agcgaatgct tacgatcagc gaaagatgcg      1620
     cgacaccctt tggctactcc tggtgtgtat aaaattccat gtagttgtgg gaaggtttat      1680
     attggaacaa caaaaagaag tatcaatact cgcctaactg aacacaaaag gaactgtcga      1740
     ctgggacaca cggacaaatc ggccgtagcg gaacatgttt ttgaaaacgg tgaccacgaa      1800
     ataaaattta gtgagacgag cgtgctagct aagacatcgc attattatgc acgtatgtat      1860
     agagaggcta tagagatctt taaacaccac aataatttta acaggaagga agaaggcttg      1920
     aagttagaca agatatggcg gtcactttgt accaaagatg tgacaatcga ttaccttgat      1980
     cgagagtaat gacgccagcc agagatagtt ttactgttga catcacgtga cgagtggtgg      2040
     cgccctctat gcccccttat aagcaggacc tccacggccc agcagccagt cgtcgactca      2100
     cctcagaaga tgttgcccgc agccggcaac gaaacgtcag gggaaggaat ttctactgtt      2160
     cgaccacggc ctctcagccc ggaagtttta attactgaag acgccggccg tgaaagccta      2220
     cacgttat                                                               2228
//
ID   Penelope-69B_LMi repbase;    DNA;    INV; 1223 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-69B_LMi.
XX
NM   Penelope-69B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1223
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 130-130 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 1223 BP; 411 A; 262 C; 172 G; 376 T; 2 other;
     agcatttcac tctatgatcc atcgtttatt atcagttccc atgagtaaag aaaacttcca        60
     aattgaatta aatactatca aacaaatagc aacaaacaat ggctaccctc ctaccttggt       120
     agattccata atgcacaaga aacagaaaaa atgtcacttc tcttatttac cctgttgtta       180
     acacctcagc accccaagac cctactaaat ggtgcacaat cccatattta ggaaamgtat       240
     ctctgcatgt ggccagaaaa cttaaatcca gaaatttcag aacatccttt tatgtacaca       300
     ataccattgg tcactttctt cccaatggta aagacaacat tccagccttg gaaaagagtg       360
     gaatatacaa aattacttgc aactgtggca aattttacat tgcgtcagtc aggcagggca       420
     atatgtacca gactgaaaga acaccacaga agttggaaac ttaggaaaga aaactcaaca       480
     tttgcagacc acctgctaaa agaaggccac agctacaagg taacacatga agtcctacac       540
     catatccaga aaggaaggaa aatgaactgc tttgagatat tggaaattaa taaacatatg       600
     tcaacttccc cagaccttgt actaaatgac cagacacagt ttccattctc gccacttctg       660
     tctgcagaat ctaaccaggc cacataaact acccactcct attcagctac ctcaagtccc       720
     tactacagat ccatagccta attactttct gtgatcacag aagtttagct acttgccaga       780
     taccaattgt aatttattat tttggtaata atattggaca tttaagccag taactataat       840
     ttaaccattt aaatttttta cctatatatt cacagatgtt tcattcagtt tattctcacc       900
     cttctgtgta ccaaatgttt gacctgttaa acttaaaatc atttgttcag ccaatttcta       960
     ttgttcagtt tattttctta ggacaaatgt tgtactttat gtcttgtcat attttatcat      1020
     gtattgtcat actagtcttc tttgaaaatt aatgtacatg tattatctac acagcaactt      1080
     aagatctttg aatgtaaact cccagctgca tctatatctc tgtagtgttt acctgatgat      1140
     ggcgtaacag ccgaaaaccg gttagtgaaa acaataaatt tgcakaatat tacacagtta      1200
     tctcgtgtgt ttcattcaaa ata                                              1223
//
ID   Penelope-69_LMi repbase;    DNA;    INV; 2084 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-69_LMi.
XX
NM   Penelope-69_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2084
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 237-237 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(179..736,718..1314,1299..1418)
FT                 /product="Penelope-69_LMi_1p"
FT                 /translation="HKVSHTYLPITKLFSFQWQGIQTVRWSSYGFPLSPIL
FT                 AEIFMDNFENQFLESNPLSSKVGYWFRYVDDVLCLWTGTTRQLQTFLKQLN
FT                 SAHKSINFTMEFGGNCINYLDLTIDISNHCHTFKIYRKPSTTDTVIPAQSQ
FT                 HPVTHKHAAFHSMIHRLLSIPMSKESFQIELNTIRQIASNNGYPLPWWLPP
FT                 TLVDSIMHKKQKQHVSSLLYPVINTPTSQDHSKWCTIPYLGKVSVNVAKKL
FT                 KSRNFKTSFYTHNTIGHFLPNGKDNPPALEKSGVYKITCNCGKFYIGQSGR
FT                 AICTRLKEHHRSWKLRQGNSTFADHLLKEGHSYNVTHEVLHHVQKGRKMNF
FT                 FEIMEINRHMYTSPNLVLNDQTQFPYSPLLSAEPNHNPVQTMPCADNVNYH
FT                 LLPTCLIPLLLFHSHVIKALCNHNCLAAYQI"
XX
SQ   Sequence 2084 BP; 695 A; 440 C; 305 G; 644 T; 0 other;
     gtattctgaa ctcaattgat ttagtgaaca agttaaaaga cttccctatc ccccctagtg        60
     ccaagctaat ttcttttgat gccagcagct tattcactaa tataccagtt ggtgagtgcc       120
     taaacatcct cacagactta ctggataaat caggagttaa tccacttgtc acagatgaca       180
     taaagttagc cacacatact tgcctatcac aaaattattt tcatttcaat ggcaaggtat       240
     acaaacagtt agatggtcta gctatgggtt cccccttagt ccaatacttg cagaaatatt       300
     catggacaat tttgagaatc agttcttaga aagcaaccca ctctcttcca aggttggata       360
     ctggttcaga tatgttgatg atgtgttgtg cttgtggaca ggaactacca gacagcttca       420
     aacattcctt aagcagctaa attcggctca caaaagtatc aacttcacaa tggagtttgg       480
     tggtaactgt ataaattatt tagacctaac tatagacatc agcaatcatt gccacacctt       540
     caagatttac aggaaacctt ccaccacaga cactgtaata cctgcccagt cacaacatcc       600
     agttactcac aaacatgcag catttcattc catgatccat cgcttattat ctatccccat       660
     gagtaaagaa agcttccaaa ttgaattaaa taccatcaga caaatagcat caaataatgg       720
     ctacccccta ccttggtaga ttctataatg cacaaaaaac agaaacaaca tgtctcttcc       780
     cttctttacc ctgttattaa caccccaaca tctcaagacc atagtaaatg gtgcacaata       840
     ccatatttag gaaaggtttc tgtgaatgtg gccaagaaac tcaaatccag aaatttcaaa       900
     acatcatttt atacacacaa taccattggt cactttctac ccaatggtaa agataaccct       960
     ccagccttgg aaaagagtgg agtatacaag attacttgca actgtggcaa attctacatt      1020
     ggccagtcag gcagagcaat ttgtactaga ctaaaggaac accacagaag ttggaaactt      1080
     aggcaaggaa attctacatt tgcagaccac ctgctaaaag aaggccacag ttataatgta      1140
     acacatgaag tcctacatca tgtacaaaaa ggaaggaaaa tgaacttctt tgaaataatg      1200
     gaaattaaca gacatatgta cacttcccca aacctggtac tgaatgatca gacacaattt      1260
     ccatactcac cacttctgtc tgcagaacct aatcataacc ctgtgcagac aatgtaaact      1320
     accatctcct acccacttgt ctcatacctc tactactgtt tcatagccat gttataaaag      1380
     ccttgtgtaa tcacaactgt ttggctgctt accagatata aattgtaatg ccttatttta      1440
     ctagttataa aatccttgtg taatcacaac tgttttggct gcttatgtga tataaactta      1500
     atgtcttatt ttactagtaa ccatagttta atttaaccag ttaaaatttt aacatatatt      1560
     tacagatgtt tcattcaact ttgtcacacg cttccatgtt ccagacattg gacctgttta      1620
     agataatttt ttggtcaagt ttaatttaac cagttaaaat tttaacatat attcacaacg      1680
     cttccatgtt tctagacatt agacctgttt aagataagat acgttttgat caatattttt      1740
     cagccaattt ctattgtttc actttatatt tcttaggata acgtcataat ctattatatt      1800
     gtcacgtatt ttatcaatgt caggaattta caccacaact tgaattgtaa tatttcccgc      1860
     aggttagtta taaaccaaaa cactagtctc ctttgaaagt tatatatcta gcaagttaag      1920
     atctttgaaa cttaaacttg taatgtttac ctgatgatgg cgtaacagcc gaaaaccggt      1980
     tcgtaaacca ataaatttgc agaatatctc acagttatct tgtgtatttc attcataatg      2040
     tatcaaatat tctgtcaaga accgacggaa cagtcagtga atat                       2084
//
ID   Penelope-6_AAe repbase;    DNA;    INV; 3074 BP.
XX
AC   .
XX
DT   07-MAY-2019 (Rel. 26.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_AAe.
XX
NM   Penelope-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3074
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3074
RA   Bao W.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Repbase Reports 21(1), 521-521 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..2889
FT                 /product="Penelope-6_AAe_1p"
FT                 /translation="MSCCSYVSTNHTKIXSEMQATTSKCFRLYGRLIAKKR
FT                 MLQLHIQFLTRCKRKGLTPNFVQIKPSTNSEASVKATKCAKKIWLVEEIRF
FT                 KHKKLSEVEEQLYPLHLQLLQQMEFHTVAECVTRRCAEEKKECWQESVDSV
FT                 YRNLEKRVRDTKQRHRRKLRSLECTQAPKTRRLPQTIDNFVVNLSSTEFTP
FT                 AELELLNKGLNFAVSPQCAPLADIVNNIESAIQYDNHAFKAATRHNVKQCL
FT                 LRTASKTENQNRPSFDTWCTIRQLKSRDVVYSRADKGNAVVIMDRDDYDTR
FT                 VHSMIGSGPYEEVKFKNGKPKDPLNKMIEEVNQARQKVAHLMGEDRLDRKL
FT                 HVPNPMVASLYCLPKIHKDPIAMRPISSNVRTPTEKMAAWLVKEMQKYPVK
FT                 HGKGVKNSVDLVEKLDGFKIRRGEILVSFDVAALFPSVPVTEALQSLRRHL
FT                 ERSRAPPNHIDAYLSIAQVCMNQNYFTFRGKTYKQTFGLSMGSKLSPLLAD
FT                 VFMSDFEVDAQKEKLFPRVWWRYVDDIFAPVKERYLEQTLTMLNSKHNTIN
FT                 FTVEKEVEGNLPFLDLMISRKEDCTLKFGIYRKPTSTDRYITSDSNHFGAQ
FT                 KQAAFHSMAHRLYNIPMEQEEFNKEEHQIHVAAEINGYDRSFVNKILQKHK
FT                 RKRHRRNITTLRSDDENVRRISLPFFPKITNPIRNTLHRQGLQVVHKSDKT
FT                 LRDLLCNLKDKVPPDEQSGIYRIPCKDCPAVYIGQTRRKVKIRLKEHKNAV
FT                 SANKISESSVAAHAITSNHAIDWESAKLIKNVRKTSHLNAWESMFISNDEG
FT                 PLMNEDDPPISSCLFNLIDTTIQ"
XX
SQ   Sequence 3074 BP; 966 A; 678 C; 692 G; 734 T; 4 other;
     cagaaatgca gtatcggcsa ataaaattag tgaatcgagt gtagcagccc atgcgataac        60
     ttccaatcat gcaatagatt gggaaagtgc gaagcttata aaaaacgtaa gaaaaacttc       120
     gcacttgaac gcatgggagt ctatgttcat cagcaacgac gaaggacccc tgatgaatga       180
     agacgatcct cccatmwcgt cgtgtctgtt caatttgata gatacgacga tccagtaaca       240
     tttctcttcg gacgcgtacg aacaacgtac gagaagcagt cagtcggaca ttgtcccgta       300
     gatgggctac atcgcgcccg aaaccggtcg acagaaaggt aatttttttt taaactttct       360
     tgacgtttgt aagaactata agtgttatgt cttgtctcgc gtcgcgtttc gtgaatgtcg       420
     tgttgttctt acgttagcac aaatcacaca aaaattktta gtgaaatgca ggctacaacc       480
     tcgaagtgct ttcgccttta tggccgattg attgcaaaga agagaatgtt gcaactacat       540
     atccagtttc taacccggtg caaaagaaag ggccttacgc cgaattttgt gcaaattaaa       600
     ccatccacca acagtgaagc aagtgtaaag gctaccaaat gtgctaaaaa gatctggttg       660
     gttgaagaaa ttcggttcaa acacaaaaag ttatcggaag tggaagagca gctatatcct       720
     ctccatttgc aactgctaca gcaaatggag ttccataccg tagctgaatg tgtaacgcgt       780
     agatgtgcag aggagaagaa agagtgttgg caagaatcgg ttgatagtgt gtatcgcaat       840
     ctagagaaac gagtgcgcga cacgaaacag cgacaccgcc gaaagttacg ttctctcgag       900
     tgcactcagg ctccgaaaac gcgtcgtcta ccacaaacga tcgataactt cgtggtcaat       960
     ctctcgtcca ctgagttcac accagcagag ctggaactgc tcaacaaagg gttgaatttt      1020
     gccgtttccc cccaatgtgc ccccctcgcc gatatcgtca ataacataga gagtgccatt      1080
     caatacgata accatgcctt caaagcggct acgcgtcata acgtgaagca gtgcttattg      1140
     cgaacggcaa gcaaaacaga gaaccaaaat cgtccaagtt ttgatacgtg gtgcacaatt      1200
     cggcagttga aatctcgtga cgtggtgtat tctcgtgcgg ataagggaaa cgcagtggtg      1260
     ataatggatc gagatgatta tgatacgcgc gttcattcaa tgatcggttc cggcccgtat      1320
     gaagaagtca aattcaagaa cggtaagccg aaagatccgc tcaataaaat gatagaggaa      1380
     gtgaatcaag cgcggcaaaa agtggcccat ctgatgggtg aagacaggct agacagaaag      1440
     cttcatgtgc cgaatccaat ggttgcatct ttgtattgct tgccgaagat tcacaaagat      1500
     cccattgcaa tgcgccctat ttcttctaac gtccgaactc ccacggaaaa aatggctgct      1560
     tggctcgtga aggaaatgca gaaatatcct gtgaagcatg gaaaaggcgt gaaaaattcg      1620
     gtcgatttag tggagaaact agacgggttc aagataagaa gaggtgagat tctggtttcg      1680
     tttgatgttg cagcgctatt tccaagcgta cctgtcaccg aagccctgca aagcctccgt      1740
     cgccatttgg aacgcagtcg agctccaccg aaccacattg acgcgtatct ttcgattgcc      1800
     caggtgtgta tgaaccagaa ctatttcaca ttcagaggga agacttataa gcaaacgttt      1860
     gggttgagca tgggcagcaa gctttcgcct ttgctagcag acgtcttcat gagtgacttc      1920
     gaggtcgacg cccagaagga aaaattgttt ccaagagtct ggtggcgcta tgtagacgac      1980
     atttttgctc ctgtgaaaga acgatattta gagcagacac tgaccatgtt aaattccaaa      2040
     cacaacacaa taaatttcac agtagaaaaa gaagtcgagg ggaatctacc ttttcttgat      2100
     ctgatgatca gtagaaaaga agattgcaca ttgaaatttg gcatttatcg caaacccact      2160
     tccactgatc gctatattac ctccgactcc aaccacttcg gtgcgcaaaa gcaagccgca      2220
     tttcactcca tggcacatcg tttgtacaac atacccatgg aacaagagga atttaataaa      2280
     gaagaacacc aaatccacgt ggctgccgaa ataaacggat atgaccgatc atttgtaaac      2340
     aaaattctac agaaacacaa acgcaaaaga cacagacgaa acataacaac actacgatcg      2400
     gatgatgaaa atgtaaggag gatcagtttg ccattcttcc cgaaaataac aaaccctatc      2460
     agaaacactc tccatcgaca aggcctacaa gtggtacaca agagcgacaa gaccctacgt      2520
     gacctactgt gcaaccttaa agacaaggtt ccaccggacg agcaatctgg aatttaccgg      2580
     atcccttgta aggattgccc agctgtctac ataggccaaa cccgccgaaa agttaaaatt      2640
     agattaaagg aacacaaaaa tgcagtatcg gcgaataaaa ttagtgaatc gagtgtagca      2700
     gcccatgcga taacttccaa tcatgcaata gattgggaaa gtgcgaagct tataaaaaac      2760
     gtaagaaaaa cttcgcactt gaacgcatgg gagtctatgt tcatcagcaa cgacgaagga      2820
     cccctgatga atgaagacga tcctcccata tcgtcgtgtc tgttcaattt gatagatacg      2880
     acgatccagt aacatttctc ttcggacgcg tacgaacaac gtacgagaag cagtcagtcg      2940
     gacattgtcc cgtagatggg ctacatcgtg cccgaaaccg gtcgacagaa aggtaatttt      3000
     ttttttaaac tttcttgacg tttgtaagaa ctataagtgt tatgtcttgt ctcgcgtcgc      3060
     gtatcgtgaa tgtc                                                        3074
//
ID   Penelope-6_BTa repbase;    DNA;    INV; 3752 BP.
XX
AC   .
XX
DT   24-JUL-2018 (Rel. 23.08, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; TSD; Penelope-6_BTa.
XX
NM   Penelope-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3752
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 960-960 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Flanked by a 10-bp TSDs. 3' end 41-bp is
CC   extruded from a termininal TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1286..3544
FT                 /product="Penelope-6_BTa_1p"
FT                 /translation="MIKLMRTALKWNLQQLYQRRDIIFKQIMALHLELLND
FT                 LHFLEFVTLEDKIHLLISDIIADKKQRHEKKFREIVAKQRPNQKNVLFNPK
FT                 FINISDVILTDEEISLLSNGMKFCPPPNTNNRLMDLVIDINHKIYSKNTLE
FT                 TISHEINNYPKRISQHAIILVNELKNKIQNQQIIVTKADKSNTLIFMNEQE
FT                 YRGKIDNFLQQTEIEEQLKDPIPVTQKNLKNLLNKSWQLTQYPKSLVQMNP
FT                 LPPKLQGYLKIHKVTEELSIRDVPIRPVVSTCQSPTYDVEKFLIKTFRRHV
FT                 TWKPQYAVKNSGELAEKLENIEIPLNAKLISLDVDNLYTNVDVEETNMKMK
FT                 TILKDHSSLSKGEIMEFTTLLEFTTSNNYFKYNGKFYKMNKGLPMGGPISP
FT                 IMADIFMDKYDHRICTSNKWASKILCYFRYMDDIFAVWLGTDRELSIFHNE
FT                 ISDLHPNLRFKLEVGGKTLNFLDLTIRVENRKIKFGIYRKQCFTDAIIPNN
FT                 SYHPWPQKMAGFHSMLNRLTTIPLEKEEYERELTTILNITTNNGYQKRDIF
FT                 HLLHRKQQEKRDRMIYGKIKTKGTEKWISIPYIEKISERVKGIIEKDKSVK
FT                 VTYGNQRNLGRILINTKEKCGKLEASGVYKIECNCGKMYIGQTGRSVATRL
FT                 KEHVDCAILKRRGQSSFGDHIIDTDHKLENCYAKLEKVCQKGRKLNVLEQI
FT                 EIMKTPKEQLLNSQIEQQVAPVIVPPALLRDATQSADHRRDIPLTSIATRR
FT                 RR"
XX
SQ   Sequence 3752 BP; 1250 A; 745 C; 693 G; 1064 T; 0 other;
     ttgacactta cttttctttt tcgcccgatg aattttttcc tcggttgtca ctcttacaca        60
     atggccattt cgacttcagt agatgtcatc atcaggtgct taaaactaag aacgaaaata       120
     aaaaataaaa ccgaagctaa aaaattgacg ttagattcac gtattatcgc cggcgacgcg       180
     tcgcgatact agtcagtggg atatctcgcc ggtgatcagc tgactgtgtt gcgtcacgaa       240
     ggagggcggg agggacgatc actggtgcca cctgttgctc gatttgtgaa ttaagtagct       300
     gttccttagg tgttttcggt atttcgattt gttctaatac atttaatttc cggccttttt       360
     gacatacttt ttctagtttc gcataacaat tttccagttt atggtcagtg tcgattatat       420
     gatccccaaa cgatgactga cctctccttt ttagtatggc acagtcaacg tgttccttca       480
     gccttgttgc cacactcctt cctgtttggc ctatatacat tttcccacag ttacattcta       540
     ttttgtacac tccgcttgct tccaattttc cacatttctc ttttgtattg atcaaaattc       600
     tgcccaaatt tctctggttg ccgtaggtta cttttacgct tttgtccttc tctattattc       660
     ccttcactct ctctgatatt ttctcgatat atggtattga gatccatttt tcggtccctt       720
     ttgttttcat tttcccatat atcatcctgt ctcttttctc ttgttgtttg cgatgtagta       780
     gatgaaaaat gtcacgtttc tgatatccgt tgttagtggt aatgttcaag atagttgtta       840
     gctccctctc atattcctcc ttttcaagtg gtatagttgt tagtctgtta agcatgctat       900
     ggaaccctgc cattttctgg ggccaggggt ggtacgagtt attaggtatt attgcatctg       960
     tgaagcattg tttcctataa attccaaact ttatctttct gttttctact cgtatggtaa      1020
     ggtccaggaa attcagagtt ttcccaccca cttccaattt gaatctgaga ttggggtgta      1080
     aatcatttat ttcattatga aaaatggaca gttctcgatc agtgcccagc caaactgcaa      1140
     aaatatcatc catatatctg aaataacata gaattttcga ggcccattta ttggatgtac      1200
     atattctgtg gtcatattta tccatgaaaa tgtcagccat aatgggggat ataggccctc      1260
     ccattggtaa ccctttattc atctgatgat caaattgatg agaactgccc taaaatggaa      1320
     cctccaacaa ttataccaac gtagagatat catttttaaa caaatcatgg ccctgcacct      1380
     tgaacttctt aatgatttac attttctcga attcgtaaca ttagaagata aaatccacct      1440
     attaataagt gatatcatag ctgataaaaa acaacgtcat gagaagaaat tccgggaaat      1500
     agtggcaaag cagagaccga accaaaagaa cgttttattt aatcccaaat tcattaatat      1560
     ttcggacgta atactcacag acgaagagat aagtctgtta agtaatggta tgaaattttg      1620
     cccccctcct aacactaata atagactgat ggatctagtc atagacatta accataagat      1680
     ttatagtaaa aacaccctgg aaactatttc acacgaaata aacaactacc ctaaaagaat      1740
     aagtcagcac gcaatcatac tagtaaacga gttgaaaaat aaaattcaaa accaacagat      1800
     aatagtcacg aaggctgaca aatctaacac cttaattttc atgaatgaac aagagtacag      1860
     gggaaaaatc gacaattttc tacaacaaac ggagatcgaa gaacaactga aagacccaat      1920
     accggtcact cagaaaaacc tgaaaaacct attgaataaa tcatggcagt taactcaata      1980
     tcccaaatca ctcgtccaga tgaaccccct ccctccaaaa ctccaaggat acctaaaaat      2040
     ccataaagtc acggaagagt tgagtatcag agatgttccg ataaggccag tagtatcaac      2100
     atgccaatca cccacatatg atgttgagaa attcctaatt aaaaccttta ggagacatgt      2160
     cacatggaaa ccccaatacg cagtcaaaaa ctcaggggaa ctggccgaaa aacttgagaa      2220
     catagagatt cccctaaatg ctaaattgat ctcacttgat gtggataact tatacacaaa      2280
     tgtagatgta gaggaaacca atatgaagat gaaaaccatt ctgaaggacc actcatccct      2340
     ctcaaaaggt gaaatcatgg aattcacaac gcttttagag ttcaccactt cgaataatta      2400
     cttcaagtac aatgggaaat tctataagat gaataaaggg ttaccaatgg gagggcctat      2460
     atcccccatt atggctgaca ttttcatgga taaatatgac cacagaatat gtacatccaa      2520
     taaatgggcc tcgaaaattc tatgttattt cagatatatg gatgatattt ttgcagtttg      2580
     gctgggcact gatcgagaac tgtccatttt tcataatgaa ataagtgatt tacaccccaa      2640
     tctcagattc aaattggaag tgggtgggaa aactctgaat ttcctggacc ttaccatacg      2700
     agtagaaaac agaaagataa agtttggaat ttataggaaa caatgcttca cagatgcaat      2760
     aatacctaat aactcgtacc acccctggcc ccagaaaatg gcagggttcc atagcatgct      2820
     taacagacta acaactatac cacttgaaaa ggaggaatat gagagggagc taacaactat      2880
     cttgaacatt accactaaca acggatatca gaaacgtgac atttttcatc tactacatcg      2940
     caaacaacaa gagaaaagag acaggatgat atatgggaaa ataaaaacaa aagggaccga      3000
     aaaatggatc tcaataccat atatcgagaa aatatcagag agagtgaagg gaataataga      3060
     gaaggacaaa agcgtaaaag taacctacgg caaccagaga aatttgggca gaattttgat      3120
     caatacaaaa gagaaatgtg gaaaattgga agcaagcgga gtgtacaaaa tagaatgtaa      3180
     ctgtgggaaa atgtatatag gccaaacagg aaggagtgtg gcaacaaggc tgaaggaaca      3240
     cgttgactgt gccatactaa aaaggagagg tcagtcatcg tttggggatc atataatcga      3300
     cactgaccat aaactggaaa attgttatgc gaaactagaa aaagtatgtc aaaaaggccg      3360
     gaaattaaat gtattagaac aaatcgaaat aatgaaaaca cctaaggaac agctacttaa      3420
     ttcacaaatc gagcaacagg tggcaccagt gatcgtccct cccgccctcc ttcgtgacgc      3480
     aacacagtca gctgatcacc ggcgagatat cccactgact agtatcgcga cgcgtcgccg      3540
     gcgataatac gtgaatctaa cgtcaatttt ttagcttcgg ttttattttt tattttcgtt      3600
     cttagtttta agcacctgat gatgacttct actgaagtcg aaatggccat tgtgtaagag      3660
     tgacaaccga ggaaaaaatt catcgggcga aaaagaaaag taagtgtcaa tcacgtagtt      3720
     cccgattaag aaacaaagga ttagtagtta gt                                    3752
//
ID   Penelope-6_CoFl repbase;    DNA;    INV; 2442 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_CoFl.
XX
NM   Penelope-6_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2442
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2411-2411 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           91..1986
FT                 /product="Penelope-6_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MGETFNFTTNMNTHSKFEFFKLLETSLHFVPIVTDKI
FT                 RTNLLKMFDKFLKSTKAQKFHNQKIINDINKTALFLKHNKELLVTKVDKGN
FT                 ATVVLDRSEYINSVEEQLNNDKYYTELSKNPLNELIKSVTTFVKRWCDLGI
FT                 FEDCEFDIRSSEISKNDLSKCYGLVKVHKAGNPIRIIVSAVNSPTYXLSKF
FT                 FTKFLNDNIPKPNSYIKNSFHIKEKLNSFIIPQHHTIISLDVVSLFTNTSE
FT                 SIILKSIKNNWKYLRNKINLSSQEFCEGVSLILNSTVFQFNNKFYKQIFGS
FT                 AMGSPVSPVLCDLALRCLEEDCLKKLSFFVPFYVRYVDDILICVPNNSIEE
FT                 TLTVFNNYDRHLQFTVETPVDNEISFLDLRLIFESDGSIITNWYRKPTHSG
FT                 RYLNYNSHHPLSQKIAIVYTLVDYSIKLSDSKFHKENLDISKKFLLNNQYP
FT                 LNFINKYIKKRLTILSINTPLNRVVSNNRGLMILPYFQGFDSIIKRYLYKN
FT                 NINVIFKCIDKFSKFIRLGKDRTKHTDRCNAVYRIVCNDCDSCYIGQSSRR
FT                 LKTRINEHMNDCKHRREKSALVDHIAKTNHSFNFDEVKILDTESNRFKRLF
FT                 SEMLYIHSYRNNINRMHDTQNLKLCYKNFITEHT"
XX
SQ   Sequence 2442 BP; 870 A; 377 C; 392 G; 801 T; 2 other;
     actcctgtag ccaacaacaa caatgattca aagtggctgt ttaatctttc taatgttact        60
     ataccasaag aagtccataa tattttgaaa atgggagaaa cttttaattt tacgactaat       120
     atgaatacac actcaaagtt tgaatttttt aaattattag aaacaagctt acatttcgta       180
     cctattgtta ctgataaaat tagaacgaat ttgttaaaaa tgtttgacaa atttctgaaa       240
     tctacaaaag cacagaaatt tcataatcaa aaaataataa atgatattaa caaaactgct       300
     ttatttttga aacacaacaa agaattatta gtaactaaag tagacaaagg taatgccact       360
     gttgttctag acaggagtga atatattaat agtgtagaag aacagctaaa taacgataaa       420
     tattatacag agttatcaaa aaatccattg aatgaactga ttaaatctgt aactactttt       480
     gtaaagcgtt ggtgcgactt gggaattttt gaggattgcg agttcgacat acgatcgtcc       540
     gaaataagca aaaatgattt atcgaagtgt tatggtttgg ttaaggtaca caaggctgga       600
     aatcccatac gtattatagt ttctgctgtt aattctccta cttatwattt atcaaaattc       660
     tttacaaaat ttttaaatga taacattcca aaaccgaatt catacataaa aaacagtttt       720
     catataaaag aaaaattgaa ttcttttata ataccacaac atcacacaat aatcagttta       780
     gatgttgtta gcttatttac caacacaagt gaaagtatta ttttaaaatc cattaaaaac       840
     aactggaagt atttaagaaa taaaataaat ctttctagtc aagagttttg tgaaggcgtt       900
     agcttaattc ttaattctac cgtatttcaa tttaataata aattctacaa acaaattttt       960
     ggatcagcta tgggaagtcc agtgagtcca gtcttgtgtg acctggcgtt gagatgtctg      1020
     gaggaggatt gcctcaaaaa actgagtttt tttgttccct tttatgtacg ttatgtcgac      1080
     gatatcttga tttgcgtgcc gaataattcc atcgaggaaa cattaacagt ttttaacaat      1140
     tatgacagac acttgcagtt cactgttgag acccccgttg ataatgagat cagttttcta      1200
     gatttaagac tcatatttga aagtgatggt tccataataa ccaactggta cagaaaaccg      1260
     acccactctg gacgttattt aaattataac tcccatcacc ccttatcgca aaaaatagcc      1320
     attgtttata ccctagtcga ttatagtatc aaattatcgg atagcaaatt tcataaggaa      1380
     aatttagaca tttcaaaaaa atttttattg aataatcaat atccgttaaa ttttattaac      1440
     aaatatatca aaaaaagact gacaatattg tctataaata cacctttaaa tcgagtggtc      1500
     tctaacaata ggggtctcat gatattacct tacttccaag gctttgactc tataattaag      1560
     agatatctat ataaaaataa tattaacgta atttttaaat gtattgacaa gttctcgaaa      1620
     tttattcggt taggcaaaga tcgaaccaaa cacacagata gatgtaacgc tgtatataga      1680
     attgtatgta atgattgcga tagttgctac ataggtcaat cctccaggcg cttgaaaacc      1740
     agaataaatg aacacatgaa tgattgtaag catcgtaggg aaaagtctgc attggttgac      1800
     catattgcta aaacgaatca ttcttttaat tttgatgaag taaaaattct tgacacggaa      1860
     agtaataggt tcaagcgact tttctcagag atgctataca tacatagtta ccgaaataat      1920
     atcaacagaa tgcatgacac acaaaatttg aaattatgtt acaaaaattt tataaccgaa      1980
     cacacataga gcaacagatt tactgtaatt taaatatgcg agttcgttga cttgtactgg      2040
     ggcggggtgg ctgtagcgtt gtgtgactta aatatactca tgtacagtga cacacttaca      2100
     ctgaccgata gtatataagc acgatcggaa cttaagaagt gcgtattttt cgatctacca      2160
     tctatcgtga tacctatagt cgctattgtc gtggctatgt gagtgttcat tattgtgcga      2220
     ttttcttgta aagtattgtt gacttgaaat attattgttt catattttta tatttttata      2280
     attgttattt agaaagttgt acctgatgag ggccttgtaa cgtggtttac tgtacgggcc      2340
     gaaacgttgt tcacagcaat aaacgatttt gatagcatca ccaagagagt cattatttct      2400
     tcataataat tatctgctat cacgagagcc actgacgaac ta                         2442
//
ID   Penelope-6_FoCa repbase;    DNA;    INV; 2827 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_FoCa.
XX
NM   Penelope-6_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2827
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2739-2739 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. The sequences 1-193 and 2632-2824
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..2645
FT                 /product="Penelope-6_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MSSNSTVQTNLNNTRGWKLLNNKLQKLNGGAIIKKVR
FT                 KLERMYKQQARTQNNTVFLHKCRXFDVIPKGLQLNCIQQQYGKNKMLQRLQ
FT                 EETERKLMKTTLRINYQHLNNLDNEIKTLRSEIRREXPHYWNWICKLLKDS
FT                 TVSYSCQIKQKHIQKFTNLTNKKIATLPVPARQEEETLKKTIHNFSSHPLS
FT                 NDEEKLLQLGLNYSLPVKDLRIPLIDSAAAIELKMNYDLELTDQTKDQVRD
FT                 GITQIMKSHINKKNYLNKWDNWIQTSIKSLTNSQNICICKADKGNSVVIMD
FT                 KADYQQKMENIIQEGPYNELIADPTQDFAKEIETRCKKLLEEEKITKMEYD
FT                 KLNIKNTRAPILYGAPKVHKENVPLRPIVDFRQSPTYQVASYLSNILKKLS
FT                 NNHVYTIKNSAEFISEIKNLKIRPGDTKVSFDVVSLFTKVPIEESLNYIKK
FT                 LLNEKNDGSWTKLTNEDIMDLLEICLSSTYFKYDGKFYHQTEGTAMGSPIS
FT                 AIVAELYLQSLEHKLVTRNKFIIFWRRYVDDIFAIIRKRKLEAVLNQINGF
FT                 HHAIKFTVEKEENGKIAFLDVMLYEKPDRSLGHHIFRKATHTNKYLNFHSF
FT                 HPPAHKIGVVDTLLTRAFKLSDKDHLNNEIEYTIKILTKNDYPESMIRYRL
FT                 KKVKRKINAGQNQDTKQLEKRIILPWAGNVTTKIARYLQRKLEVEIGYYPG
FT                 PKLFTMICNTKEKIKKTQCGVYSIKCNDCPAKYIGETERDFKTRISEHENA
FT                 IRNEATTISPVAKHMIEQNHQLDPNSHKLILKEPRKFYRKFKEGLFIRNIK
FT                 KEERMNISKGMPINSIWSTTLINFLMYP"
XX
SQ   Sequence 2827 BP; 1172 A; 551 C; 430 G; 672 T; 2 other;
     ttttaatgta tccatgaata ttatgtcatt gaaatttcca aaaattcaaa caacgttgta        60
     gtatctctgt tttctttttt caaactaatt tatgcctgat gatgatccgc tgtaagcgat       120
     cgaaagctcg caataatcaa taaaatcaag tcaaaatgtc ctcaaatagt accgtccaaa       180
     ccaatttaaa taatactcga ggatggaagt tattaaacaa caaactacaa aagctcaacg       240
     gtggggctat aataaagaaa gttagaaaac tggaaaggat gtacaaacaa caagctcgaa       300
     cacaaaataa tacggtgttt ctacataaat gcaggamatt cgatgtaata ccaaaaggat       360
     tacagcttaa ctgcatacaa caacaatatg gaaaaaacaa gatgcttcaa cgactccaag       420
     aagaaacgga aaggaaactt atgaaaacaa cactcaggat aaattatcaa catttgaata       480
     atcttgacaa tgagatcaaa actttgagaa gtgaaatacg gcgagaakca ccacattatt       540
     ggaattggat atgcaaatta ctcaaggact caacagtaag ctattcctgt cagatcaaac       600
     aaaaacatat ccaaaaattc actaatctca cgaacaaaaa aattgcgact ttacctgtcc       660
     ccgcacgtca agaggaggag acactgaaga aaacaattca taatttttct tctcatcctc       720
     tatcaaatga cgaagaaaaa ttacttcaac tcggactaaa ctactctctc ccagtgaaag       780
     acttacgtat cccactaata gattcagcag cagccataga actaaaaatg aactatgatt       840
     tagaattaac agatcaaaca aaggatcaag ttcgagacgg catcacccaa atcatgaagt       900
     cccatattaa taagaaaaac tacctcaaca aatgggacaa ctggatacaa acgtcaatta       960
     aatcattaac aaattcacaa aacatatgca tatgtaaagc agataagggg aattcggtag      1020
     taataatgga taaagcagat taccaacaaa aaatggaaaa tataattcaa gagggcccgt      1080
     ataatgaatt aatagctgat cccacccaag attttgcaaa ggaaattgag acgagatgca      1140
     aaaaattact agaagaggag aaaatcacaa aaatggaata tgacaaacta aacataaaaa      1200
     atacgagagc accaatctta tacggagcac caaaggttca caaagagaat gtacctttac      1260
     gcccaatagt tgacttccga caatctccaa cataccaagt agcttcttat ctatcaaata      1320
     ttttgaagaa attgagcaat aatcacgttt acaccatcaa gaattctgca gaatttattt      1380
     ccgaaataaa aaacctgaaa attcgaccag gggacacaaa ggtctcattt gatgtggtgt      1440
     cactatttac aaaggtaccc atagaagaaa gtttgaatta catcaaaaaa cttctaaacg      1500
     aaaaaaatga tggatcttgg accaaattga caaatgaaga tattatggac ctactagaaa      1560
     tatgcctctc atcgacgtat ttcaaatatg acggaaaatt ctaccaccaa acagagggaa      1620
     cagccatggg ttcacccatc tcagcaattg tagcagaact ctatctgcaa agcttagaac      1680
     acaaactagt caccaggaac aagttcatca tcttttggag gagatacgtt gacgacattt      1740
     ttgcaattat tagaaaaaga aaattggaag ctgtcctcaa tcaaatcaat ggatttcacc      1800
     atgccataaa attcacagta gaaaaagaag aaaatggcaa aatagcattt ctagacgtga      1860
     tgctctacga aaaaccagac cgaagcttag gccatcacat tttcagaaaa gcaacacaca      1920
     ccaataaata cttaaatttc cattccttcc acccacctgc acacaaaatt ggagtagttg      1980
     atacgctgct gacaagagcg ttcaaactct cagacaaaga tcatctcaac aacgaaatag      2040
     aatacaccat caaaatactc acaaagaatg actacccaga atctatgatt cgataccgct      2100
     tgaagaaagt caaacgaaaa attaacgcag gacaaaacca agacaccaaa caactagaaa      2160
     aacggattat tttaccttgg gcaggaaacg tcacaaccaa aattgcacga tatttacaaa      2220
     gaaaattaga agtagaaatt ggctattatc ctggacctaa gctattcaca atgatatgca      2280
     atacaaaaga aaaaatcaag aaaactcaat gcggcgtgta ctccatcaaa tgcaatgact      2340
     gtcctgccaa atacataggg gaaaccgaaa gagacttcaa aacaagaata tctgaacatg      2400
     aaaatgccat tagaaatgaa gcaacaacaa tttcacccgt tgcgaaacat atgattgaac      2460
     aaaatcatca actagacccc aattcccaca aactcatact taaggaaccc aggaaatttt      2520
     acagaaaatt caaggaagga ttattcatca gaaacataaa aaaagaagaa aggatgaata      2580
     tatcaaaagg aatgcccata aactctatct ggtccacaac actaattaat tttttaatgt      2640
     atccatgaat attatgtcat tgaaatttcc aaaaattcaa acaacgttgt agtatctctg      2700
     ttttcttttt tcaaactaat ttatgcctga tgatgatccg ctgtaagcga tcgaaagctc      2760
     gcaataatca ataaaatcaa gtcaaaatgt cctcaaatag taccgtccaa accaatttaa      2820
     ataaatt                                                                2827
//
ID   Penelope-6_LMi repbase;    DNA;    INV; 2381 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_LMi.
XX
NM   Penelope-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2381
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3181-3181 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2253
FT                 /product="Penelope-6_LMi_1p"
FT                 /translation="GKQNCKLLSVHITISNGVCSSDWDRIDRLLHDTINKR
FT                 VLTTSSRQRKKFDSLRPQPTISQLDSSRTVINLSGHLLSDDERSVLARGGN
FT                 FAVSPRVVPTEEIIANIEAGIRNLDKVTAEEIRIEAVRVLARAKPPKSNLT
FT                 TGEKNAIKSLNEDDSIIILPADKGNCTVVLNVTDYHCKIKELLDPQTYRKL
FT                 SKDPTDKVLRTVTQLIKKSSIEQCVQKSLFNSVALPPRLYGLPKVHKEKEN
FT                 VPPLRPIVSAIASPTYLIAKFLTTLLRPHVGRSDSYIKNSRHFISKLNDIL
FT                 VNPEDILVSFDVVSLFTMVPVNEVLQQLNLLFPPDIADLFKYCLTTTYFKW
FT                 NDDFYEQTDGVAMGSPLSPVIANFYMEKFEEQALKTANKKPAIWFRYVDDT
FT                 FVVWRHGREELDRFLQHLNGINSRIQFTMEKEADGKLNFLDVSVFKKGNGR
FT                 LGHTVYRKPTHTDRYLHRDSNHHPQQKRGIIKTLADRARNICEPELLDAEL
FT                 KHLSNALLKNGYSSTEIRRALRPTRRVENDERVPVKSKVFLPFIKDVTDRI
FT                 GKILTKRNVAVIYKPTRKIQDHLKSAKDARKPLEKAGIYRIPCSCGDVYVG
FT                 TTKRTVKKRLDEHKGNCRRGEIDRSAVAEHVFQPGDHLIQFDKTQVLAATN
FT                 GYHERLYREAIEIVKHPNNFNRMEEGVKLNEIWIPVLKKKCNSLPPWDDIN
FT                 GRRQSATTNCARMSKTSDVTPLRASPRKRSLASVSSEPGCASDIQKCHDPP
FT                 "
XX
SQ   Sequence 2381 BP; 753 A; 477 C; 553 G; 598 T; 0 other;
     ggcaagcaaa actgtaagtt attgtctgtc catattacca tcagtaatgg tgtgtgtagt        60
     agtgactggg ataggattga caggttgttg cacgatacca ttaacaaacg tgtgttgaca       120
     acgtctagta gacagaggaa gaaatttgac agtttgcgac cgcaaccgac catcagtcaa       180
     ttagattctt cccgcactgt tatcaattta tcgggacatt tgctatctga tgatgagaga       240
     tcggtgcttg ccaggggcgg aaattttgcc gttagtccgc gagttgtgcc tacagaggaa       300
     attatagcca atatagaagc gggtattcgc aatttagaca aagttacagc tgaggaaata       360
     cgtatagaag ctgtcagagt attggctcgc gcaaagcctc caaaaagtaa tttaacaacg       420
     ggtgagaaaa atgctataaa aagcctgaat gaggacgata gtattatcat tctccccgca       480
     gataagggaa attgtacagt ggttttaaat gtgactgact accattgcaa gattaaggaa       540
     ttgttagatc cgcagaccta caggaaactt agtaaagatc ctactgacaa agttcttaga       600
     actgttacac agttaataaa aaagtcttcc attgaacagt gtgttcaaaa aagtctgttc       660
     aattcagttg cactaccgcc aagactttat gggttgccga aagtccacaa agaaaaggaa       720
     aacgttcccc ctctgagacc aattgttagt gcaattgctt cgcccaccta tttgattgcc       780
     aagttcttga caacactatt acgaccgcat gtggggcgct cagattccta tatcaagaat       840
     tcgagacatt ttataagtaa attgaatgat atattggtca atccagagga catattagtt       900
     agttttgacg tggtatccct gtttactatg gttccagtca atgaggtgct gcaacagctg       960
     aatctcctct ttccacccga cattgcagat ctgttcaaat attgcctcac gactacttat      1020
     ttcaaatgga acgatgattt ctatgaacag acagatggtg tagctatggg gagcccttta      1080
     agcccggtta tagcaaattt ctatatggaa aaattcgagg aacaggcatt gaaaacagca      1140
     aacaaaaaac ctgctatttg gttccgctat gtagacgata cgtttgttgt gtggaggcat      1200
     ggtagagagg aactagatcg ttttcttcaa cacctcaacg ggattaattc tagaatccag      1260
     tttaccatgg agaaggaggc agacggaaaa ctgaattttc ttgacgtgtc agttttcaaa      1320
     aaggggaatg gcagattggg ccatacagtt tatcggaagc ccacacacac agaccgttat      1380
     ctgcaccggg attcaaacca ccacccacag caaaagcggg gcattataaa gacgttggcg      1440
     gacagagcaa ggaacatctg cgaaccggaa ttactcgacg cggaattgaa acacctgagt      1500
     aatgctttac ttaagaatgg ctattcgtct acagagataa ggagagcttt gagaccgaca      1560
     cgtagagttg aaaacgatga aagggttcct gtgaaatcta aagtcttcct gccttttatt      1620
     aaggacgtca ccgaccgcat cggtaaaatt ttgacgaaac ggaatgttgc cgttatttac      1680
     aaacctactc ggaagataca ggatcacctg aaatcggcaa aggatgctcg caaaccgctg      1740
     gaaaaagcag gaatttatag gattccgtgt agctgtggag acgtatacgt gggtaccaca      1800
     aaaagaacag tcaaaaaacg actagatgag cacaagggga actgtagaag gggagagatt      1860
     gacagatcag ctgttgctga acatgttttt caaccagggg accaccttat tcaatttgat      1920
     aagactcagg ttttagcagc cacaaatgga taccacgaaa gactgtacag agaggctata      1980
     gaaattgtaa aacaccccaa taatttcaat aggatggagg agggcgtgaa actaaatgaa      2040
     atctggattc cggttttgaa gaagaaatgt aacagtcttc caccatggga cgatattaac      2100
     ggacggcggc aatcggcaac gacgaattgc gcgcgcatgt caaaaacatc tgacgtcaca      2160
     cctctgcgcg cgagccctcg taaacggagt ttggcttcag tcagtagcga gccagggtgt      2220
     gcatcggaca ttcaaaagtg ccacgatccc ccttgagaat gtcctccgca gtcggggacg      2280
     aaacgttggg tttcaataat aaatccacaa gaccacggca taatagcccg gaaattttta      2340
     gtaattttga ccattccggc cgtgaaagtt tacattttac a                          2381
//
ID   Penelope-6_SIn repbase;    DNA;    INV; 2778 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 19.02, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope-type retrotransposon sequence - a consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2778
RA   Jurka J.;
RT   "Penelope retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 490-490 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           176..2101
FT                 /product="Penelope-6_SIn_1p"
FT                 /translation="MNIQCLLQLGENFSLPISNKKIVIFEFIKNIERNIKK
FT                 FPGPLQMAVRNHSIPLLNNLLSFSPHRNQSQFSNLVKITKSFLKDNPNLII
FT                 TKADKGNITVALNRDDYTNKLNEMLSDNETYTIIKKDPSKNLTSKLRTLLS
FT                 KWKNLNYISDSNYKRIFCSDGLIPRAYGLPKVHKANCPLRIIVSSIDSPLY
FT                 ELATFLHKILSTSIPPARGHIDNSFELVKELNNSQINSDFRLISLDVVSLF
FT                 TNVSTELAVNSIHKRWNLISQHCKIPRDEFVGAVRFVLDSTFFKFDNQYYK
FT                 QNFGTPMGSPLSPIIADLVMQDLESEVLETIDFPVAFYYRYVDDIVTAVPP
FT                 PYIDTLLNNFNAIHPRLKFTIEVGGDKINFLDTTILISDNKIKFDWFHKPT
FT                 FSERYLNFLSQHPLSQKRGVIMGMVDRAFFLSHPEFHQKNLESVVNILLSN
FT                 DYPLDFIFKTIKTRLKSLIHNRNTQQDNFTNNSESEQTKNWFTIPFIDSVS
FT                 NKFRGITNNTDSGLAFYSLNKLGTFIKVHKDPLQDTSKKNVVYKILCNDCD
FT                 ASYVGQTGRQLNTRISEHRQHIRRNTTTNSVITDHRLHCGHDFDWDNVQVL
FT                 DVEKNIFKRLTSEMLHIKSQRESLNLQTDTDFLDHAYSAILDRL"
XX
SQ   Sequence 2778 BP; 851 A; 552 C; 477 G; 898 T; 0 other;
     ttcaaatttg ttaaataacg tcgacgcagc ctctacagcg tcatctgatt ccatttcctc        60
     tgaccttctc actatttccc ttgatccctc ctttttctgt aacaatattc ccccttcctc       120
     ttttgttacc atcaggaaca aatggttttt gaatctgtca tctacggtta tacctatgaa       180
     tatacaatgt ttgttacaac ttggtgagaa tttctcctta ccaattagta acaaaaaaat       240
     tgttatattc gaatttataa aaaatattga acggaatatc aaaaaatttc cgggtccact       300
     acaaatggca gtcagaaacc attccattcc tttactcaac aatcttttat ctttttctcc       360
     tcataggaat caatcacaat tttcaaattt agttaagatt actaaaagtt ttttaaaaga       420
     caatccgaat ttgataatca caaaggctga taagggtaat attacggttg ctttgaacag       480
     agatgattac acgaataaat taaatgagat gttgtcggac aatgagactt atactataat       540
     caaaaaagat ccttcaaaaa acttgacgag taagcttaga acgctgttgt caaagtggaa       600
     gaatctgaat tatatctcag actctaatta caaaagaatt ttctgtagcg atggcttaat       660
     acctagagcc tacggtctcc cgaaagtaca caaggcgaac tgccccctta ggatcattgt       720
     gtcatcgatt gacagtccgt tatatgagtt ggcaacgttt ttacataaaa tactttccac       780
     tagtatccca ccagctcgtg ggcacattga caacagcttc gagcttgtaa aggaattgaa       840
     taattcacaa attaatagtg atttccgatt aatatcgtta gacgttgtgt cattgtttac       900
     gaacgtttcc acagaactgg ccgtaaacag tattcacaag agatggaacc ttatctcgca       960
     acattgcaag attcctcgag acgaattcgt gggcgccgtt cgctttgttc ttgactcgac      1020
     tttttttaaa tttgacaatc aatattacaa acaaaatttc gggactccta tgggctctcc      1080
     gctatcgcct atcattgccg atttagttat gcaggatttg gagagtgagg tgctcgagac      1140
     aattgatttt cctgtagctt tttattaccg atacgtagac gacattgtca cagcggtgcc      1200
     accgccgtac attgatacgt tattgaataa tttcaacgcg attcatccaa ggttaaaatt      1260
     cactatcgaa gtcggcggtg ataaaattaa ttttttagac actacgattt taatttctga      1320
     caataagatt aaatttgact ggtttcacaa acctacattt tcagaaagat atctgaattt      1380
     tttgtctcag catccgctct cacaaaagag aggtgttatc atgggcatgg ttgatagagc      1440
     cttctttttg tcgcatcctg aatttcacca aaaaaatcta gagtcagtag tgaacattct      1500
     tttgagtaat gactatccgt tagattttat ttttaaaact ataaaaacaa gattaaaaag      1560
     tctgatccat aatcgaaata cccaacagga taatttcact aataattctg aatctgaaca      1620
     aacaaaaaat tggtttacga tcccctttat tgattcagtg tctaacaaat tcaggggcat      1680
     cacaaataat actgactctg gattggcatt ttacagtctc aacaaactcg gcacttttat      1740
     caaagtccat aaggatcctc tccaggatac ctccaaaaag aacgtcgtgt ataaaatatt      1800
     gtgcaatgac tgcgatgctt cctatgtggg ccagacgggg agacaattaa acacgagaat      1860
     ctcagaacac cgccaacata ttcgtagaaa cacgacaact aattctgtta ttactgacca      1920
     tagattgcat tgcggtcatg attttgattg ggacaatgtt caagttcttg atgtcgaaaa      1980
     gaatattttc aaacggctca cttcagagat gctacatatc aaatctcaga gagagagtct      2040
     gaatttacaa acagacacgg actttctcga ccatgcctac tcggcgatct tagacaggtt      2100
     gtgacctctc tgatacatat cggctattat ttcgtgctca tttgtgttcg tgcggttgac      2160
     gaggaaacat cgactatctc tgtgccattc tatttattat atttattagt tttattattt      2220
     ccgactcaac gacgtctttt ttttaaaaat ctgtgttaat ttattatttt acgatgtgac      2280
     gtcaacacct tacaaaatgg cttgaattga cagtgctggt gagttgtctg aattttttat      2340
     tttataactt ccgaggattc atgttcactg tccaccacag attacggcat gatcgctcat      2400
     atgtccatct tggtggtcaa cattgatgga ccataatgtg taaattcgct ctgaattctt      2460
     gtacacgaaa aagcgactac acggcgtgtc aatttctcgc cctcgagtcg gagacaacgt      2520
     atgccgggct tgaaatgttt gtttcttttg ttcaacgcga ccaccacgtc acacaacggt      2580
     tattttaacg gaattacatc gttgaaaatg attttaatgg aattcatcgt tgaaaatgac      2640
     ttcaagggaa gtcgaaacgc gtccgatatt aatgtataca tatcgatgta ctaaagcgaa      2700
     atacattgta ctattattat tgacgcacca attaccgcgt ttgactcgca tttcctacgt      2760
     tttattttct aattttaa                                                    2778
//
ID   Penelope-6_TrVa repbase;    DNA;    INV; 2767 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-6_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2767
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 631-631 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. This family is inserted in (TA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           13..2544
FT                 /product="Penelope-6_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MFYQLVRRLHGPAVVTELKNLNKISKKLVCANSKKIF
FT                 LLACRKQRLIPHFINFRSHHITRELTIKKEKANKLLENFKFQLLNLCIDDT
FT                 HVQIKNFGNQIRGIIRRLCAKLPSVVFSDFIQNLTTRNNRLFTSLNLKLGK
FT                 KFQSLKQEYLNRYLDKFRPFLEKKDTWVENTSDTLLPDFVLRVLCLGPAFC
FT                 IPFFKEGDAGVSVFRPVPVEKIIINIENIIRFEPLIVCDKLRSKICQTIKT
FT                 YFNLGQRLSGFENLNVVSNNRFKECFFTRSLKKDITEAYFFIKRNKQIKVI
FT                 RADKTNKTVIINSFDYREKMNDLLSDSKTYKKSHHSLVPAQSAKNNFFVKK
FT                 LLDQGFITKNIAENLKVTGASVCKIYGLIKLHKQGLPLRPIVSTINSPFYA
FT                 LSKFLSAILSKIVGDTEYHVKNSFEFFNDVNNLVIPEGFRLISLDVESMYT
FT                 NIPCELALECVERRWEEIQHHCSIPKDLFLHILEVCISSTIFQFEDKFYQQ
FT                 KCGLAMGGSVSAVLADIVMEDFEIEVLSSTQHLIYLYKRYVDDLFLVVKHS
FT                 DIIPIFEFFNSKSSSIQFKVEQEMDQSINFLDMTVMRVGNYLKCRWYQKPT
FT                 ASGRYLNYLSVQPSIYKRNVVYNLAQRIIRLTDHQYRPEVIKLGKQLLIEN
FT                 CYPPSLIDKIFSFVHKKIDNFNTNVLTHSHNAFDTSHIISLPYVPYLSENL
FT                 SVILKLFGYRVVHKRYNDLGFLLSPLKSKTDSSQMSSVIYSIKCNDCELSY
FT                 IGQTKQILSKRFNGHKYDQNEKTALHHHQNSLGHTFDFHGAKILGFERNDF
FT                 ARNLLEMIEILKHESSVCNCRADVSRLSSAYHQFFRPDRAGD"
XX
SQ   Sequence 2767 BP; 842 A; 500 C; 496 G; 928 T; 1 other;
     aggaattgca ktatgtttta tcaattggtt cgacgcttac acggacctgc ggtcgtaacc        60
     gaactgaaaa atctcaataa aatcagtaag aagttggtat gtgcaaattc aaaaaaaatc       120
     tttttgttag cttgtagaaa acaacggtta attcctcact tcattaattt cagatctcac       180
     cacattactc gtgaacttac tataaaaaag gaaaaagcca acaaattgct cgaaaacttt       240
     aaattccaac ttttgaatct gtgcatagat gatactcatg ttcaaattaa aaattttggg       300
     aatcaaataa gaggtataat tcgtcgctta tgtgccaaac ttcctagtgt tgttttttcg       360
     gattttattc aaaacttgac tactcgtaac aatcgtttat tcaccagcct caacctgaaa       420
     cttgggaaga aatttcagtc tttgaaacaa gaatacttaa ataggtactt agacaaattt       480
     cgaccttttt tagaaaagaa ggacacatgg gttgaaaata catcagacac actgttgcca       540
     gattttgtat tacgtgttct ctgtctaggt ccagcgtttt gcatcccttt ctttaaggaa       600
     ggagatgcag gtgtgtcggt ttttagacca gttccggttg aaaaaatcat cattaacatc       660
     gagaacataa tcaggtttga gcccttaatt gtctgtgata aactccggag taaaatatgt       720
     cagaccatca agacttactt caatttaggg caacggttat caggttttga gaacttaaac       780
     gtcgtttcaa ataacagatt taaagagtgt tttttcaccc gttcattaaa aaaagacatt       840
     acagaggcgt attttttcat caaacgcaat aagcaaatca aggttatccg tgctgataag       900
     accaacaaaa ctgttattat aaacagtttt gactatcgtg aaaaaatgaa cgatctactc       960
     agtgactcca aaacctataa aaaatcccac cattctttag tccctgctca gtcagccaag      1020
     aataattttt ttgtcaagaa attgttggat caaggtttca tcacaaaaaa tatagctgaa      1080
     aatttgaaag taactggagc ttctgtgtgt aagatatatg gtttaattaa gcttcacaaa      1140
     caaggattgc cacttagacc aatcgtcagt accattaact caccttttta tgcgttgtcg      1200
     aaatttctct ctgcaatatt atccaaaatt gtcggagaca cggaatatca tgttaaaaat      1260
     tcattcgaat tttttaacga tgtcaacaac ttggtaattc ctgaaggttt tcgactcata      1320
     tctctcgatg tggagtcgat gtatactaat attccgtgcg agcttgccct tgaatgtgtg      1380
     gaaagacgtt gggaggaaat tcaacatcat tgttccatac ctaaagatct ttttctccat      1440
     atcctcgaag tatgcatctc ttcaacaatt tttcaatttg aagacaaatt ttatcagcag      1500
     aaatgtgggc ttgctatggg tggtagcgta tctgcggttt tggcagatat tgtgatggag      1560
     gattttgaga tagaagtgct ttcttcaaca cagcacttaa tttacttgta taagcgctac      1620
     gttgatgatt tgtttttggt ggttaagcat tcggatatta tccctatttt tgagtttttt      1680
     aattcaaaaa gttcctccat ccagttcaaa gttgagcagg aaatggatca gagcattaat      1740
     tttttggaca tgactgtcat gagggtaggt aattacttaa aatgccgttg gtaccaaaaa      1800
     cccacagctt cgggccgtta tttaaattat ttgtccgttc aaccatcgat ctataaacgg      1860
     aacgttgttt acaatctcgc gcagcgtatc atcaggctta cggatcatca atacaggcct      1920
     gaagtgataa aattgggcaa acagctccta attgagaatt gttacccccc ctccctcatt      1980
     gacaagattt tcagtttcgt ccataaaaaa attgataact ttaacaccaa tgttttgaca      2040
     cactcacaca atgcttttga tacttctcat ataatatcgt taccttatgt gccgtatctt      2100
     tctgaaaatt tgtcagttat tcttaagttg tttggttatc gggtggtcca taagcgatat      2160
     aatgacctcg gtttcttact gtcaccttta aaatctaaga ctgatagcag ccaaatgtcc      2220
     tctgtaattt attcaattaa gtgcaacgat tgtgaattga gctacatcgg gcaaactaaa      2280
     cagatactga gtaaaagatt taatggacac aagtatgacc aaaatgaaaa aactgctctt      2340
     caccatcatc aaaattctct tggtcatact tttgatttcc atggcgcgaa aattttaggt      2400
     ttcgagagga atgatttcgc gagaaatctc cttgaaatga tagaaatctt gaaacacgag      2460
     agcagtgttt gtaattgccg cgcagacgtg tccagattaa gctctgctta tcaccagttt      2520
     tttcgtccag atagagctgg tgattgatac tattctttgc ctgtgtagtc ttttccttca      2580
     aatgagaact tgtttgtggt ttgagcttta gtcatggccg ttgttatcgt gatggcatga      2640
     ctcttatttt atattttttt tggttttttt aattttcgat tgataaagga ggtgttagcc      2700
     ctccgaaacg tcttgatttt ttaattttat tgtttcgcgg ccttattccc atttaagttt      2760
     ttattat                                                                2767
//
ID   Penelope-70_LMi repbase;    DNA;    INV; 2606 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-70_LMi.
XX
NM   Penelope-70_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2606
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 238-238 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(200..838,935..1486,1275..2501)
FT                 /product="Penelope-70_LMi_1p"
FT                 /translation="QNTGRSYHEGLNFAVTPRDLPVASFISSVEQVXNTLP
FT                 SNVAEEIRRETCRALTRPAPKTNISRDERMALKKLREDDSIVVLPADKGNS
FT                 TVILQKTDYDLKIRRLLEDEAYKPLEQDPTDRVDRKTKTLLKETGWPEKVI
FT                 KQLKAKAPVPPRLYGLPKIHKEGVPLRPIVSNIGAATYPTATHLKKMLAAI
FT                 CGEMCSPHPKLIRLCGTAQKPTFWTCAGSIKHILTSTYFLCGGQFYEQTEG
FT                 VAMGSPLSPVVANLFMERFEDEALTTATHQPKCFFRYVNDTFVIWPHGREK
FT                 LEEFLDHLNSRHPSIKFTMELEKDGQLPFLDVLVKKKADGTFGHSVYRKPT
FT                 HTDLYLQANSCHHPAQKTGVLRTLIHRAKTLSDSDNLAKELEHLRQVFTEN
FT                 GYPRRRQMAPLAIVCTESQHTQIYICRPTAATTQHRRLGCSEHSYIGPRHY
FT                 PTQTTWQRNSNIFDKYSLKTDIHRAMHPTRRMDESEQEQEEESKKLAFLPY
FT                 AGPISAKISRILKKHKIKSVFCPPSKIRALLGTVKDDLGLRKPGIYNVPCE
FT                 CGMSYIGQTTRTVDIRCKEHQRHTRLRQATKSAIAEHCLEMEHSMEYQKTK
FT                 ILAQTTRFWDSIITESIEINLARNLINCEAGYXLSTAWNPALELMRQYRNK
FT                 VTNFNNEPREDQEATNATGGGHSGRGRNCEHPESQEGATRGRGPNXXHQDA
FT                 TTAAGGGQNGRGRQSEHQERQGCGLAGADPIGNTGRHDRRWGGQNGRGRQI
FT                 EQQKHQDARLAGADLVGNARLGADRKRNTRHWPGINISPGQPGNHSQATPE
FT                 EDTE"
XX
SQ   Sequence 2606 BP; 829 A; 643 C; 643 G; 486 T; 5 other;
     gatgccatct ccagctgtta cacctacatt gcaccgctgg cagccaacct atcagcagaa        60
     gattgggaca aacagatagt gtatcgtggt cactagcggc atgcatcaag cacaaggcca       120
     ccagacaact ggctaaattg agccttgaac agcagagtgc aacaagatca tgacaccgca       180
     aggttgtgaa tttgagtgac agaacactgg acgaagctac catgaaggtc ttaattttgc       240
     tgtcactcca agagatctac cggtggccag cttcatcagc tctgtggaac aagtgstcaa       300
     cacactacct tcaaatgtag cagaagagat cagaagagag acatgcagag cactaaccag       360
     gccagcacct aagactaaca tctccagaga cgagaggatg gccctcaaga aattacgaga       420
     agacgatagc atagtggtgt taccggcaga caaagggaac tccacagtca tactacagaa       480
     aactgactat gacctgaaga tccgccgact tttggaggat gaagcttaca aaccactaga       540
     gcaagatcca actgacaggg ttgacaggaa aaccaagacc ctgctgaagg aaactggatg       600
     gcctgagaag gttatcaaac aactgaaagc aaaggcacca gttccaccca gactctacgg       660
     cctaccgaaa atccacaaag agggggtacc actacgaccc attgtgagca atattggagc       720
     agccacctac ccaactgcaa cacatcttaa gaaaatgtta gctgccatat gtggggaaat       780
     gtgctcacca catccgaaac tcatcagact ttgtggaacg gctcaaaaac ctacgttttg       840
     aggaagcaga tttaatggtc agttttgacg tagtatcact ttttaccaga gtgccactta       900
     aagacacgct tgatttaatc agcgagaagt ttgatggacc tgtgctggat ctattaaaca       960
     tattttgaca tcgacctact ttctatgtgg gggtcaattc tacgagcaga ctgaaggtgt      1020
     ggcgatgggt agccccttgt caccagtagt ggccaaccta tttatggaga ggtttgagga      1080
     tgaggctctt acgactgcca ctcaccaacc aaaatgtttc tttagatacg tcaatgacac      1140
     atttgtcatc tggccccatg gccgtgaaaa actggaggaa tttctggacc acctgaactc      1200
     aagacatccg agtattaaat tcaccatgga gctagagaag gatggtcagc ttcccttctt      1260
     ggacgtcttg gtaaagaaga aggcagatgg cacctttggc catagtgtgt acagaaagcc      1320
     aacacacaca gatttatatc tgcaggccaa cagctgccac cacccagcac agaagactgg      1380
     ggtgctcaga acactcatac atcgggccaa gacactatcc gactcagaca acctggcaaa      1440
     ggaactcgaa catcttcgac aagtattcac tgaaaacgga tatccataga gcaatgcatc      1500
     caaccagacg tatggatgaa tcggaacagg agcaagaaga agaatccaag aagcttgcct      1560
     ttttaccata tgccgggccc atctctgcca agatcagcag aatactaaag aaacataaaa      1620
     ttaagagtgt tttctgtcca cctagcaaaa tcagggctct acttgggaca gttaaagatg      1680
     accttggatt aaggaaacct ggcatttaca atgttccctg tgaatgtggt atgtcttaca      1740
     tcggacaaac cactagaaca gtggacatta gatgcaagga acaccaacga cataccaggc      1800
     tgcggcaggc cacaaaatca gcaatagccg aacattgcct ggagatggaa cattccatgg      1860
     aataccagaa aaccaagatc ttggcccaga ccactagatt ctgggatagc atcatcacgg      1920
     aatcaataga gatcaaccta gcacgaaact tgatcaactg tgaagcagga tacmaactaa      1980
     gcactgcgtg gaatccggca ctggaactca tgaggcaata ccggaataaa gttaccaact      2040
     tcaacaacga gccaagggaa gaccaggaag cgacgaatgc cackggaggc ggccatagcg      2100
     ggcgtggacg gaattgtgaa cacccagaga gccaggaggg cgcgactcgt gggcgcggac      2160
     ctaatagksa acaccaggac gccacgaccg ccgctggggg cggccagaac gggcgcggac      2220
     ggcagagtga acaccaagag cgccagggat gcggactcgc gggcgcggac ccaataggga      2280
     acacaggacg ccacgaccgc cgctggggcg gccagaacgg gcgcggacgt cagattgaac      2340
     aacaaaagca ccaggatgcg agactcgcgg gcgcggacct agtagggaac gcccgattgg      2400
     gcgcagaccg aaaacggaac acgaggcact ggccaggcat aaatatctca cccggtcaac      2460
     caggcaacca ttctcaggca acacctgaag aagacaccga gtaacggtcg tcgaaatatc      2520
     gtgttttgga agacgctgat atccggcaga agacccgact tcaacaagat gtcaacaaat      2580
     cgccgggaaa gtctaagaaa ttacat                                           2606
//
ID   Penelope-71_LMi repbase;    DNA;    INV; 3102 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-71_LMi.
XX
NM   Penelope-71_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3102
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 239-239 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(599..907,1064..2311)
FT                 /product="Penelope-71_LMi_1p"
FT                 /translation="MLIKCINRKLRXNDAIITKADKGNSIVIAYVTEYVDK
FT                 TVKFFEDNNIVEVPNDPTLDLQKEIRHCLANTKFLFNKLKKNGLVNMNPML
FT                 LFLEANLSSTRKITHHSSLYTNVPVDLTLEIIEENLLQHKKLADEHIAELM
FT                 MLLSHLKYNYFTFNGKVYEQSFGLAMGSPLAGIMADIFINSLENAFFASTS
FT                 NLHNKIRFYARYVDDIIILFDGNDHELDQLFTVFNNFHETINFTKEVQNEH
FT                 AELNFLDLKLAIVNDSIAFDIYRKPTYSDMIIPAHSAHPRSHKLAFFHSAI
FT                 NRAFTTPLSPANLEKEINTIKSIAINNGYDTDVVQRIVDQKTSQQFSTLLS
FT                 SKSHLDKTDSQRFISIPFLGNVSYRLQRLLTKKYDCKVTFSTNNNLKKNLV
FT                 HTLETLVDPFSNSGIYKITCNNCPCYYIGQTGRAIKVRYKEHLLGRTGRNV
FT                 HNSTFAEHLLVADHVPKSLEDTVILHREAKGRKLDLWEEYEIFKHLIINDG
FT                 NMLNDQLQLASRQYLEGFKPILF"
XX
SQ   Sequence 3102 BP; 987 A; 594 C; 534 G; 983 T; 4 other;
     cctgattacg tgaaatccta cataaacgtg aagcagtgca acaaagtgcc acacatcaag        60
     tacaaactkg taaaacaaat tttaaacgat aggactatmg aactccataa gaagaaagac       120
     atgtgaacag agagcttata gttcatacct aactttaaca aaagcttttg aagacgcttt       180
     taattatcaa attgatgagg tttttaatag tatcaatgac tggctgtata atcgcaaatg       240
     cgagatcgtg gacagacatc aaaagaaact tgccaagttt agaagtaggg cacttgtatg       300
     taaaaatgtt tccgatacag cagatagcaa taatagtaaa tttttcgata gagtagtgaa       360
     caaaacwgac attattttta ctcatgatga aaatgtcatt ttacaaaatg gttttaaata       420
     taacttagct tcaaagctac aaaatccatc tgtcattagc aatttggtac ttgatcttaa       480
     gcttggttta gaatctgtga aattcgacaa agtcaaacag gttaaaattg cacatgaaag       540
     caatatcatc atagaaaaag aacttgcact acagtctaat ttttgtaata aagaacagat       600
     gttaattaaa tgtattaacc gcaaattaag agwaaatgat gctatcataa ctaaagctga       660
     taaaggaaat agtatagtca ttgcatacgt gacagaatat gtcgataaaa ctgtaaagtt       720
     ttttgaggac aacaacatcg tggaggttcc caatgatcca actttagatt tacaaaaaga       780
     aattcggcat tgtttagcaa atactaaatt tttgtttaat aaattaaaaa aaaacggttt       840
     agtgaacatg aacccgatgc tcctgttctt agaagccaat ttaagctcca caaggaaaat       900
     cacccattag gcccttggtg aacagcatag gtagtgcaca ccacacactg ctaggcgtct       960
     tcaccaaaaa ttaaagacgc gttgtcttcg aacgttattt ttctgttaag aataggacag      1020
     acctgattga taaaataaag aatacaaagt tagcctcttt tgacatagta gtctttacac      1080
     caatgtacct gtagatttga ccctggaaat tatcgaagaa aatcttttac aacataaaaa      1140
     gttagctgat gaacatattg ctgaattgat gatgttatta agtcacctta aatacaatta      1200
     cttcaccttc aatggcaaag tttatgagca atcatttggt ttggcaatgg gtagtcctct      1260
     cgctggtatc atggcagaca tttttatcaa ttctcttgaa aatgcttttt ttgcttctac      1320
     ctcaaatttg cacaacaaaa taagatttta tgctcggtat gtagatgaca taattatcct      1380
     gtttgacggc aatgaccacg aattagacca gttatttaca gtatttaaca acttccatga      1440
     aaccattaat ttcactaaag aggttcaaaa tgaacatgcc gagctcaact tcctcgatct      1500
     aaaattggcc atagtaaacg acagtatagc cttcgatata taccgcaagc caacatattc      1560
     tgatatgatt attccagctc attctgcaca cccacgttca cataaattag ccttttttca      1620
     ttccgctatc aatcgtgctt tcacaactcc cctgtcgcct gctaacttag aaaaggagat      1680
     taacacaata aaatccatag ccatcaataa cgggtacgat acagatgtag tgcaacgcat      1740
     cgttgatcaa aagacttccc aacagttttc aacattactc agtagcaaat cgcaccttga      1800
     taaaactgac agtcagagat tcatttctat tccgttttta ggcaacgtat cgtacagatt      1860
     acaacgtcta ttgacgaaga aatatgattg caaggtaact ttttctacta acaacaattt      1920
     aaagaaaaac cttgttcata cactggagac cttagtagat cctttttcca attctggcat      1980
     ttacaagata acatgtaaca actgtccctg ttattacata ggacagacag gaagagcaat      2040
     caaggtgcgg tataaagaac atctactagg gaggacagga cgcaatgtgc ataattctac      2100
     ctttgccgag catttgcttg tagccgatca tgtccctaaa tcgttggaag acactgtaat      2160
     tttgcatagg gaggccaagg gaaggaaact tgatttatgg gaagaatatg aaattttcaa      2220
     acacctcatc atcaacgatg gtaatatgct gaacgaccaa ctccaacttg caagtagaca      2280
     gtacctagaa ggtttcaaac ctatactgtt ttagacattt gttaatgcaa tacttgttcc      2340
     tgcatggtgt ttattgtcct cagaattcta gtggtgcact tgtttatagt tttctgatgt      2400
     tgtgatgcat aatgtttgta ccgttccctc ccaccgggtg cgtgctgttt gttcttagtt      2460
     tgtgtttcat gcactatgtc tggccgctga atatttccta acttttctat ctccaatttt      2520
     tgcgtgtacg cacgtatata tattctgcca tgcacatggc tcggctccag atttctttgc      2580
     acgttatttc ccatctttct ttattttatg ttttctgtca gtatcatatt acacatagtt      2640
     tcctcttgtc aaattcattc gcgtccgcga ctgcgcgcac gcccatcagc cctcttggcg      2700
     ccaccgtagt gcgggcgcac gtcactaggg ttcctacgcc tctgccagta cgcagtgctc      2760
     actcgacctg tgtgtggacg tgctccacaa ttttatgatg tgacattgtt ttaaatttta      2820
     ctttttaatc tattgacatg gagtcagcca cattttattt aacaactttt ttaatgtgag      2880
     ctttatgtaa gtacattctc acctatgctg taattttaat ttcttatttt agaaacactt      2940
     ttgtatttta ctattattca tatttgtgta ttacatttca ttaggtatac ttctgaagaa      3000
     ggcaaaatta cttttgccga aacctaggta aaggtttatg catgtaaacc attttatgca      3060
     actggtcggc tgaaactgtg ttgacttttg gatcgtgttc ac                         3102
//
ID   Penelope-72N1_LMi repbase;    DNA;    INV; 336 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; non-autonomous;
KW   Penelope-72N1_LMi.
XX
NM   Penelope-72N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-336
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 131-131 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 336 BP; 104 A; 67 C; 65 G; 100 T; 0 other;
     ataaaattct tgaatatccg tctccagatc gcttttattt tctaaaacat gaccggtttc        60
     gggacagctg cccatcttca gatcaaattt tgaagttaca gagtaacctg tcctgtgatg       120
     aacgaatgtt caagtcgtta cagtaacgac tgtgaacatt cgttcatcac aggacaggtt       180
     actctgtaac ttcaaaattt gatctgaaga tgggcagctg tcccgaaacc ggtcatgttt       240
     tagaaaataa aagcgatctg gagacggata ttcaagaatt ttattcatat aacgatcgca       300
     gaaactccct ggagaccaat aagtcttgct ttgata                                 336
//
ID   Penelope-72_LMi repbase;    DNA;    INV; 2070 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-72_LMi.
XX
NM   Penelope-72_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2070
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 240-240 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(8..634,582..1346,1350..1544,1574..1693,
FT                 1740..1910)
FT                 /product="Penelope-72_LMi_1p"
FT                 /translation="MKLYTKIEICVQISGNLSLKIVELCQRVKDVAIPEDA
FT                 VLASLDIVNLYTNVPISETLTIIKHNLIKNKSMTVGEIIEFLDLLEFTLAF
FT                 NYFTFNDKVFIQDDGLAMGNCLSGILAEIFVNDFENKFFASYPEIKGKLIY
FT                 YRRYVDDSILLYKGRKEEVVEMSKVLNDQHPKMQFTLELERNGAINFLDLT
FT                 IRXDGGRHAFGVYRKRDILEXTEGDTHSVCTGKETYSDSIIGATSRHAAQH
FT                 KRAYFYSMCNRALRLPLAEEELQKELDIIKQVAAANGYKTQDVMRMFNKIK
FT                 NKSTGNNIFKDKKKFVTLTYRGRVSERIAKHFPRNIGVAFKNDGQMAQRLR
FT                 HRPTTKKRTKYSNSGVYKIKCASCDKYYIGQTGRNFEVRYKEHCNNSNRTA
FT                 FGAHAKDNKHQVSTIGEQMEVLHRAPKSFHLNVLEELEVYAHKEKDPDKLL
FT                 NEQTDFMHKNFFEIFKDILPCLEWNALPNTSYGGPQHTGGGEWDTAEETSA
FT                 TLLLPDTLKPHPQTGKKTLSTILKSFERFSKTFLTTVLLKMLLYVSRTQCY
FT                 LISTSFYSLTAEYLICNCYFIPVNNYLLRIILTKMIPTNQMILSTLYKASG
FT                 GYYVLVTTVNIRSSQDRLLCNFINLVCF"
XX
SQ   Sequence 2070 BP; 717 A; 382 C; 401 G; 569 T; 1 other;
     gctacgaatg aagctttata ccaaaattga aatatgcgta caaatttcag gaaacctcag        60
     tttaaaaata gttgagcttt gtcaacgagt taaggatgta gcaattccag aagacgccgt       120
     cctagcttct ttagatattg tgaacctgta cactaacgta ccaatttcag aaacattaac       180
     aatcatcaag cacaatctca taaaaaacaa gtctatgacc gtgggtgaaa tcattgaatt       240
     tttagatctg ttagaattca cattagcctt caactatttt accttcaatg acaaagtttt       300
     tatacaagat gatggtttag cgatgggaaa ttgcctatcg ggtattttag ctgaaatttt       360
     tgtgaacgac tttgaaaaca aatttttcgc ctcttatccc gaaatcaaag ggaaactaat       420
     ttattacaga cggtacgttg atgactctat tttactgtat aaagggagga aagaggaagt       480
     tgtggaaatg tcaaaagttt taaacgatca acacccaaaa atgcagttta ctttggaatt       540
     ggagcggaat ggggcaatca atttccttga cttgaccata agaaakgacg gagggagaca       600
     cgcattcggt gtgtacagga aaagagacat actctgatag cattatagga gcgacatcac       660
     gacacgcagc acagcacaaa agagcatact tctactcaat gtgcaacaga gctctcagac       720
     taccacttgc cgaggaagaa ttacaaaagg aactagacat tatcaaacag gtagccgcag       780
     ccaatgggta caagacgcaa gatgtcatgc ggatgttcaa taaaattaaa aacaaatcca       840
     ctggcaataa catatttaaa gataaaaaga agtttgtcac tttaacatac agaggacgtg       900
     tgtcggagag aattgcgaaa cactttccga gaaacatagg ggtggcgttc aaaaatgatg       960
     ggcaaatggc acaaagatta aggcatagac ctaccacgaa aaaacgcaca aagtacagca      1020
     actctggggt atacaagatt aaatgcgcca gctgtgataa atattacata gggcaaactg      1080
     gacgcaactt tgaagtccga tacaaagagc actgcaataa cagcaatcgc acagcatttg      1140
     gagcgcatgc taaagacaac aaacaccaag ttagcactat aggcgaacaa atggaagtgc      1200
     tgcacagggc accgaaaagc tttcatttaa atgtacttga agagcttgaa gtatatgcgc      1260
     acaaggagaa agacccggac aaacttctaa atgagcagac agatttcatg cataaaaact      1320
     tttttgaaat atttaaagac attttgtagc cttgcctgga atggaacgcg ctgccaaaca      1380
     ccagctacgg cggccctcag cacactggcg gcggtgaatg ggacacggcg gaggaaacct      1440
     cggcgacgct gctgctgcct gacacactga agcctcatcc gcagacggga aagaagacat      1500
     tgtccacaat attaaaaagt tttgagagat tttctaagac attttaatat ttaaccatgt      1560
     taaatttttt taactcacta cagttttact taaaatgtta ttatatgtat ccagaaccca      1620
     atgttatctt atttctacgt ccttttatag tttgacagct gagtatctca tttgtaactg      1680
     ctattttata ccttgactac tatcttacac cttgacttca gaattgattt tatatgtaag      1740
     tcaataatta cttattgaga ataattttaa cgaaaatgat ccccaccaat cagatgattt      1800
     taagtacatt atataaagcc tcaggaggct actatgtttt agtaacgact gtgaacattc      1860
     gttcatcaca ggacaggtta ctctgtaact tcataaattt ggtatgtttt taatattttt      1920
     ccattaactt tttgatatca tactttgtaa atagtagctt acattcagtt gtaacatttg      1980
     tttaacagat ctgaagatgg gcagctgtcc cgaaaccggt atgttttaga aaataaaagc      2040
     gatctggaga ctgatattca agaattttat                                       2070
//
ID   Penelope-73N1_LMi repbase;    DNA;    INV; 590 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; non-autonomous;
KW   Penelope-73N1_LMi.
XX
NM   Penelope-73N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-590
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 132-132 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 590 BP; 198 A; 98 C; 98 G; 196 T; 0 other;
     ttgcaataaa gttccggatt gctgcttatg ttttatttaa tagtgctaca gctgtttcga        60
     cagtttgtca ttctcaagcg cgtctacgat gtttggacgt taattaatgt tgacatctgg       120
     cgtaactgtt gcataaacta catggaaata tacacgtatt tagttgttgt atacggtttt       180
     tagctgtcag gtattatgca gctttttacg ttaaaacttt aaattaaaga aaacttttat       240
     attttttcgt aattaacaac agctttgcaa tttggcaaag ctgttgttaa ttacgaaaaa       300
     aatataaaag ttttctttaa tttaaagttt taacgtaaaa agctgcataa tacctgacag       360
     ctaaaaaccg tatacaacaa ctaaatacgt gtatatttcc atgtagttta tgcaacagtt       420
     acgccagatg tcaacattaa ttaacgtcca aacatcgtag acgcgcttga gaatgacaaa       480
     ctgtcgaaac agctgtagca ctattaaata aaacataagc agcaatccgg aactttattg       540
     caatgtcttt ctacgacata tatgatgctg caggcccaac aattaggaaa                  590
//
ID   Penelope-73_LMi repbase;    DNA;    INV; 1903 BP.
XX
AC   .
XX
DT   08-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-73_LMi.
XX
NM   Penelope-73_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1903
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 241-241 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           24..1388
FT                 /product="Penelope-73_LMi_1p"
FT                 /translation="NQQSIHLQQKVHCKKFTQLADKIKNIIIPPNSKFVSL
FT                 DIKTYTPIFLKETINIINENLLQYRKISIIETNEIINLLTTILSQNYFEFN
FT                 NKIYTQADGVAMGSSIASTLADIFLNTLEDKLFTSEQQILKQIIYYYRYVD
FT                 DTLMLINGTNDDTHKIYQLFNNLHPNIKFTIEQEVNNSINFLDLTITKINN
FT                 QHNFEIYRKPTTTDCIINANSCHPMSHKLAFFNSMINRMIKLPLQKAAIDK
FT                 ELSILQYIAFRNNFNPEIVTQLYKKQITPNEDQTHKDIHLAREDRIHSKFK
FT                 YIPATYFGKISNKINELFKNTRIKFAFRTNNNLRTKLHFTSISNSPYLEPG
FT                 IYKITCDNCNSFYIGQTGRNFLTRYREHVRISENNQSSFYLHLRNENHSAL
FT                 NIENALTILHKIPKGIEMNILEEFEIYIHTKNYPNEILNEHTDFKHKNYLV
FT                 NFIDFIDEKG"
XX
SQ   Sequence 1903 BP; 790 A; 360 C; 229 G; 524 T; 0 other;
     taatatcagc aaaaattaaa taaaatcaac aaagtataca ccttcaacaa aaagtacact        60
     gtaaaaaatt cacgcaacta gctgataaaa taaaaaacat cattatccca ccaaactcta       120
     aatttgtttc actggatatc aaaacctata caccaatatt cctaaaagaa acaatcaata       180
     tcataaatga aaacctctta caatacagaa aaatttctat catagaaacg aatgaaatca       240
     ttaatctcct aacaactatc ttatcacaga attatttcga attcaataac aaaatttaca       300
     ctcaagcaga cggtgtagcc atgggaagta gcatagcaag tacattagca gacatctttc       360
     tcaataccct agaagataag ctattcacat ctgaacaaca aattttaaaa caaatcattt       420
     attactaccg ttatgtagat gatacgctaa tgcttataaa tggaaccaac gacgacacac       480
     acaaaattta tcaacttttt aacaacctac accctaatat aaaattcacg attgaacaag       540
     aagtaaataa ttcaataaat tttttagatc ttacaattac taaaattaac aaccaacaca       600
     acttcgaaat ttatagaaag cctaccacca cagattgcat cataaatgct aactcatgtc       660
     atcccatgtc acataaacta gcatttttca actcaatgat taataggatg atcaagttac       720
     ctcttcagaa agcagcaata gataaagaac tttcaattct tcagtacata gcattcagaa       780
     acaactttaa tccagagatt gtcactcagt tgtataagaa acaaattaca ccgaatgaag       840
     accaaacaca caaagacatc cacctagcta gagaagacag aatacatagc aaatttaaat       900
     acatacccgc cacatacttc ggtaaaatat ccaacaaaat taacgaactt ttcaaaaaca       960
     ccaggattaa atttgctttt cgcactaaca acaatctaag aacaaaattg cactttacat      1020
     ccatcagtaa ttccccatac ttagagccag gtatttacaa aatcacatgt gacaactgta      1080
     acagctttta cattggtcag actggacgta atttcctcac aagatatcgt gaacacgtaa      1140
     gaataagtga aaacaaccaa tctagtttct atttacatct cagaaacgaa aaccattcag      1200
     cacttaacat cgaaaacgca cttacgattt tgcataaaat accaaaggga atagaaatga      1260
     atattttgga ggaatttgaa atatatattc acactaaaaa ttatccgaac gaaatactta      1320
     atgaacacac tgatttcaaa cataaaaatt atctggttaa ttttattgac tttatcgatg      1380
     aaaaaggctg aaaagcaaag atatgctaaa tgagcagagg aaaaaacgaa ataaacctct      1440
     ctgaccaatg ttaaagttaa aaaagtatct cataacttag ttgattacta tatatgtaaa      1500
     catctttggc aaagctgttg ttaattacga aaaaatataa aagtttcttt aatttaaagt      1560
     tttaacgtaa aaagctgcat aatacctgac agctaaacgt atcaacacaa atacgtgtat      1620
     ttccatgtag tttatgcaac agttacgcca gatgtcaaca tttaacgtcc aaacatcgta      1680
     gacgtaagtt ataaggaaaa tttataacaa acaaatttat gtatattttc ctattgtttg      1740
     atttgtaatt aatgtaattc ttatatacgc aggcgcttga gaatgacaaa ctgtcgaaac      1800
     agctgtagca ctattaaata aaacataagc agcaatccgg aactttcatt gcaatgtctt      1860
     tctacgacat atatgatgct gcaggcccaa caattaggaa aaa                        1903
//
ID   Penelope-74_LMi repbase;    DNA;    INV; 1917 BP.
XX
AC   .
XX
DT   09-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-74_LMi.
XX
NM   Penelope-74_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1917
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 242-242 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(441..647,651..1409,1489..1737)
FT                 /product="Penelope-74_LMi_1p"
FT                 /translation="NNFLKRECKAQDKIQMYRRYVDDILLVYKGTEDEIND
FT                 FTSDINKMHRDIVFTVEHEQQGILNYLDLRFKRDELGIFRKPTFTGAVINK
FT                 TSCHPHKHKVAFFKSAVHRANSIPLTPENKKEEMRTLRQIAVENGYEAGLV
FT                 DKLDRMIRRKNKQIEKTSQKYRVMPFWGNISHKVAKLFNKEGVKIAFRTDN
FT                 RLEQRLKHKVDSGDDWAGKAGVYEVKCLDCEMKYVGQTGRNFKIRFKEHNN
FT                 VENGSSAVAKHLKNERHSLGNINNSMRPIHYEDKGWLLSNLEEVEIFCALR
FT                 KEPNSILNEQTELSKGHFWSHFGNVLLDKQIVFLDGFTFDSSNTVGLSLVV
FT                 GSVWTISDIAEQIVSSPQLCLQLETCYTVRNVYLLTLRICRKHFTLDVALG
FT                 QICFRIQGKPV"
XX
SQ   Sequence 1917 BP; 626 A; 280 C; 458 G; 553 T; 0 other;
     gactcataag agtggggaac cggtgaggcc tgtgatcaat gagagaaagg ggccaggggt        60
     aaaacttatg aaaagattga gtgaattgtt acgtgaatgg tatacataca atgaaagttt       120
     ctcggttaaa aatagtttcg aggtggcaca gctgatacag gaatgcaaat taaatgaaga       180
     cgctaggtta gcttctttgg acgtaaccaa tctgtacaca tcggttcctg ttgatgagac       240
     agtagacata atagaaaaca acttagtcag catggaaaaa tatctcatat tgaaatagat       300
     gaatttataa aattgttaag gttcgtccta tctttcaatt attttaaatt taatggcaag       360
     ttttaccaac aggagaaagg cttagcaatg gggtgtacat tagcaggaca gatggcagat       420
     atatttttga attcatatga aacaactttc ttaaaagaga atgcaaagca caagataaga       480
     tacagatgta cagaaggtat gttgatgaca tacttttagt gtacaagggt actgaggacg       540
     agataaatga ttttacgagt gacattaaca agatgcacag ggacatagta tttacggtag       600
     agcatgaaca gcaggggatt ttaaattatt tggatttgag attcaaataa agagacgagc       660
     taggaatttt caggaagccc acatttacag gtgccgttat taataaaacg tcttgccacc       720
     cccacaaaca taaagtagcg tttttcaaaa gtgcggtaca cagggcgaac tccattccgc       780
     taacccctga aaataagaaa gaagaaatgc gaacacttcg gcaaatagcg gtcgaaaatg       840
     gttatgaggc cgggttagta gataaattgg ataggatgat cagacgcaaa aataaacaga       900
     ttgagaaaac ctcccagaaa tatagagtca tgccattttg gggtaatatc tcacataaag       960
     tggctaaatt atttaacaaa gaaggggtga aaatagcttt taggacagac aacagattag      1020
     aacagaggtt gaaacacaag gttgattcag gagacgattg ggcggggaaa gcgggagttt      1080
     atgaagttaa atgtttagat tgtgaaatga aatacgtggg acagactggt cggaatttta      1140
     aaattcgatt taaagagcat aacaacgttg agaatggctc ttcggcggtg gcgaagcatc      1200
     taaaaaatga acggcattcg ttgggcaata ttaataacag tatgaggcca atacattatg      1260
     aggataaggg atggttgctg tctaacctgg aggaggttga aattttttgt gcgttaagaa      1320
     aagaaccgaa tagcatatta aatgaacaga cggaattgtc taaaggacat ttctggtctc      1380
     attttggtaa tgtccttctc gataaacagt gaaacttccc ctcgcatttg gttccttggg      1440
     gttggggttg gctgatttac tgttagaagt tttttggata cattttaaat tgtgttttta      1500
     gacgggttta ctttcgatag tagcaatacg gtaggtttat ctttggtagt gggtagcgtt      1560
     tggactatct ctgatatagc agagcagata gttagcagtc cacaactgtg cctccaacta      1620
     gaaacatgtt atacggtgag gaatgtttat ctgttgacat tgcgcatatg ccgcaaacat      1680
     tttacgcttg acgttgcctt agggcagata tgttttagaa ttcaaggtaa gccagtctag      1740
     gatgaacata ctttgttata ttgacatgga tcgtatttaa ggttttagtg ttttcgtttt      1800
     aatttacgtt ttccttggct ttctcctttt agaacttgag aatgggctaa tgtaggcccg      1860
     aaacatgtcg ttcggacatt tttacattgt gacaactgga gcggaaactt tagtgcg         1917
//
ID   Penelope-75_LMi repbase;    DNA;    INV; 2296 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-75_LMi.
XX
NM   Penelope-75_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2296
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 243-243 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(193..666,608..1120,1051..1653)
FT                 /product="Penelope-75_LMi_1p"
FT                 /translation="GNKKSIPIRPVVDGVNSPTYHISKKLNNLLNKFYTYN
FT                 KRYTIKNSRTLAKNIKDIKIPPEAKFVSFDITNLYTNVPIQETIDIIEQNL
FT                 LKYRKIPIQNTLEILQLIKLVLHQNYFEFDNKIYTQKDGVAMGCSIAGTIA
FT                 DIFLNNFGRKILQNEKLNKQTYSLTTSEEKFFKTKNSTNEKIIYYYRYVDD
FT                 TLMLIEGNPSDIDNIHKALNQLHPKMKFTIEHEHNKTINFLDLTIKNINNK
FT                 HHFEIYRKPTTTDCIINAHSFHPKAHKLAFFHTMLNRLTNLPLEDNAIQKE
FT                 IKILEYIAQQNDYDPKIITQLYYKKKHNQTDLIYIKKSKNYNTTILQKKTQ
FT                 PNRLNIHKEITLNTHTATRRKTTYITTTYLGNISNNINKLFNKTNITFAYQ
FT                 NRQNLKHKIHNDNSKIPIYNHPGIYKISCNTCHKFYIGQTGRNFNIRFKEH
FT                 TRDSENNPSTFFQHLKTEKHDVKPINEALKVLHITQKGAVMTVLEEIEIFL
FT                 HAHSNPQNLLNEKTDLKHKKYIENFIDIIKLENG"
XX
SQ   Sequence 2296 BP; 1056 A; 480 C; 255 G; 505 T; 0 other;
     ataaacaaaa atgaatacgc acaagttaat gactttaata gtaataatac cacaaaatcc        60
     aaaccaatcc cacaaacaaa ttcttagccc aaactaagaa accataaaag catgcatact       120
     acactcacag aatatgaaaa gagaacatgt atacaatgaa cccagaacac caaagctcca       180
     cggacaccct aaggtaataa gaaatctatt ccaatacgtc cagtagtaga cggtgtcaac       240
     agtcctacat accacataag caaaaaatta aacaacctcc tcaacaaatt ttacacatac       300
     aacaaaagat acacaataaa gaattccaga acactggcta aaaatatcaa agatataaaa       360
     atacccccag aagcaaaatt tgtatctttt gacattacta atttatacac caacgtccca       420
     atccaggaaa caatagacat catagaacaa aatttactaa aatacagaaa aattccgata       480
     caaaacacat tagaaatttt gcaactcata aaacttgtct tacaccaaaa ttatttcgaa       540
     tttgacaata aaatatacac acaaaaagat ggagtcgcta tgggatgtag catagctgga       600
     accatagcag acatattcct taacaacttc ggaagaaaaa ttcttcaaaa cgaaaaactc       660
     aacaaatgaa aaaatcatat actactacag atacgtagat gacactctaa tgcttataga       720
     aggtaatccc tcagacatag ataatataca caaagcactg aatcagttac accctaaaat       780
     gaaattcacc atagaacatg aacataataa aaccatcaac tttcttgacc taactattaa       840
     aaacatcaat aacaaacacc actttgaaat ttacagaaag cctaccacaa cagactgtat       900
     catcaatgca cattcattcc atcctaaagc ccacaaactt gcattcttcc acactatgct       960
     caacagattg acaaatctac ctctagaaga caatgcaatt cagaaagaaa taaaaatcct      1020
     agaatacata gctcaacaaa acgattatga tccaaaaatt ataacacaac tatactacaa      1080
     aaaaaaacac aaccaaacag acttaatata cataaagaaa taacactaaa cacacacaca      1140
     gcaacacgaa gaaaaacaac atatataacc acaacttatc taggaaacat ctcaaacaac      1200
     attaataaat tattcaataa aaccaacatc acctttgcat atcaaaatag acaaaacctt      1260
     aaacacaaaa tccacaacga caactcaaaa attcccatat acaaccaccc tggcatttac      1320
     aaaatttcgt gtaacacttg ccataaattc tacataggac aaaccggcag aaatttcaac      1380
     attagattta aagaacacac cagagacagt gaaaacaacc catctacatt ctttcaacat      1440
     cttaaaacag aaaaacacga cgtgaaaccc ataaacgaag cactaaaagt cctccatatt      1500
     acgcaaaaag gagcagtcat gaccgttcta gaagaaatag aaatattttt acacgcacac      1560
     agtaaccctc aaaatttact gaatgagaaa accgacctta aacacaaaaa gtatatagaa      1620
     aactttattg atatcataaa attagaaaac ggataaattc aagcagagat actaaataac      1680
     gtatatccat agagacaaaa taaacagtgt actacagaga tataacacaa tgaagacgat      1740
     accactaacg aaatataaca aaataattac gaaaaattta ctaataataa agcataaaaa      1800
     catcaacaaa atttatcgaa aattctagta aaagacctaa ttaaagccaa acccaataaa      1860
     acaaacaaat tacaacagag ttctccacaa aacacttcaa tagtaactat gtaaacatgg      1920
     aatatcgcaa atacactgtc aaccaagctg tcaagatcga aataacgtaa gaagctaaca      1980
     ggcaccaatt gacatccagg tgtaaaaaat aaagacagca tagacacaaa cgaggcacca      2040
     atcgacatct aggtgaaaaa taaagacagc agtgacacat acgatattcc atgtaaggta      2100
     agaactaaga aattgtaaac cacttccatc tatagttaca atacatatat gtatattcag      2160
     accattacaa atgtatttac agagcacctg atgatggcta aaggccgaaa tgagctcatt      2220
     gtgatttata aataataaca gcaagtataa agcagtgttg ttggtgtatc attataataa      2280
     tcatgtcatt acaaga                                                      2296
//
ID   Penelope-76_LMi repbase;    DNA;    INV; 2628 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-76_LMi.
XX
NM   Penelope-76_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2628
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 244-244 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(663..1130,1094..1462,1345..1911,1901..2086)
FT                 /product="Penelope-76_LMi_1p"
FT                 /translation="KCSFLSLDIKNLYTNVPIDETLQIVYNNLIRFGKVEP
FT                 AFAAELMEMVSLSLSFNYFTFNQNVYHQKKGLAMGSSLSGILSEIFVNNLE
FT                 CNFFSTSGGLSGKIKLYRRYVDDIFIIISGDENDVRELVDVFNTLHANMKF
FT                 THEVEVEGFLTFWICVLSRGVLNFLDLRIVKNEQKLSIEIFRKPTATDLII
FT                 ANDSCHPPAQKRAFFNSMFYRVAKLAISEDVKEKEINLIIQIGLANGFNEA
FT                 AIRKLVILFSKKLEKFPWRRRNPPDTFHSHILVVSQIRGGDKEIGDSVFKK
FT                 IRKVPVAEKEPTRYISLTYFGRISDKIANAFRKANVKVGFRTKSKLGQILR
FT                 HSVEPVPDKLSRAGVYKILCGSCNKFYIGQTGRDFKIRYREHGYASNGSAL
FT                 GDHLRECQHHLRNINDGLTILHVSNKGVSLDILEEIEIYISHQSCPDLLIN
FT                 DQLVGSRNWFFDFFHKYLMNGNVMAMYEVVGRVDGLAPRFPCLTVSVNLIA
FT                 FSSFNTMFVNFFLPLSSSCPLANGSHTLRLSHLC"
XX
SQ   Sequence 2628 BP; 770 A; 466 C; 532 G; 860 T; 0 other;
     aatatgtcaa atatcacttt ctcaagggag aagacttctc aataagggtc ccagctgcgt        60
     tagcgtgctt attttaataa taagattttt aaagatatca tatcgaagtc aaaatgggtg       120
     tgagatgtta aagtgtcagg acctgaacag gctactattg cagttaaaac actaaagcgc       180
     ttactcaagt gtgcagtcgc gtcagccctt gcagttttta agaaccttaa taaaagctta       240
     cacaaataag ggttagttac gaggccgaca aaagttcttc cattgtattg attaacgata       300
     ctgattacat ttctaaactg taaactttga agagaatgaa attgttcaag ttgacaaaaa       360
     tccgctctta acttttgcaa aagacattag gcacattatt aacagctctg tgtcgtattg       420
     gactaaaatg gaaaaagaaa agacttatta tgatgaaccc taaaatgcct atcttgcggc       480
     acagataaaa ttgcacaaag aaaacaaccc tatacgtccc tgtttccggg tttatagccc       540
     caattattac cttaacagtt ttgtcaagcc acaataaggg agttctatac ttttcacaac       600
     agatacagtg tgtagaatag ctatgaaatg gcaagtatct tgcaggattt tgttttacct       660
     gaaaatgctc tttcctttcc cttgatatta aaaatttgta tacgaatgta ccaattgacg       720
     agaccttaca aattgtttat aacaatctca tacgctttgg taaagtggaa cccgcgtttg       780
     cggcagagct catggagatg gtcagcctct ccttgtcatt taactatttc acgttcaatc       840
     agaatgttta tcatcaaaaa aagggtttgg ctatgggatc tagcttgtca gggatacttt       900
     cagaaatttt tgtcaataat ctggagtgta attttttttc cacctctggg ggtctatcag       960
     gaaagattaa gttatatcgt agatatgttg atgacatttt cataataatt tctggcgatg      1020
     aaaatgatgt tagagaatta gttgacgtct ttaatacctt acacgcaaac atgaaattta      1080
     cgcatgaagt tgaagtagag gggttcttaa ctttttggat ttgcgtattg taaaaaatga      1140
     acagaaattg agtatagaaa tcttccgtaa gcctacggcg acggacttga ttattgccaa      1200
     tgattcctgc cacccaccag cgcagaaacg cgctttcttt aactcaatgt tctatcgagt      1260
     ggctaaatta gccatttccg aagacgttaa ggagaaagaa attaatctca ttattcaaat      1320
     aggcttagcc aatggcttca atgaggcggc gataaggaaa ttggtgattc tgttttcaaa      1380
     aaaattagaa aagttcccgt ggcggagaag gaacccacca gatacatttc actcacatat      1440
     tttggtcgta tctcagataa gatagccaat gccttccgca aagctaatgt taaggtgggt      1500
     tttcggacaa aaagcaagct agggcaaatt ttgcgacaca gcgtagagcc tgttccagat      1560
     aaacttagta gggcgggggt gtataaaatc ctgtgtggat cgtgtaataa attttatata      1620
     ggacaaaccg gacgtgactt caaaattagg tatcgagagc atgggtatgc gagtaatgga      1680
     agtgcattgg gtgaccattt acgtgaatgt cagcaccatt tgaggaacat taacgatggt      1740
     ttgacaattc tgcacgttag taataagggt gtttcattgg atatcttgga agagattgag      1800
     atttatatta gccaccagag ttgcccggac ctattaatta atgatcagtt ggtggggtct      1860
     cgcaattggt tctttgattt ttttcataaa tatttgatga atggcaatgt atgaagttgt      1920
     cgggcgtgtg gatggactgg cgccccgttt cccttgtctc actgtatccg tgaacctgat      1980
     tgccttttca agttttaata ccatgtttgt aaacttcttt ctgccactca gcagcagctg      2040
     ccctctggcg aacggctctc atacgctgcg cctgtcacat ttatgttaag acctgattcg      2100
     aggaaattct taattttgtc catgttaata ttctgcaaat gtctgtacaa gactaaatat      2160
     tttattttgt ttgtatatat ggactgttat attcatatat ctttatgacg tcttaggtga      2220
     ggtgctgccc tcacgtggtt tgtattcgcc ctaacggcac tgaaaaagat ttgatttcag      2280
     tttactttta gctttcgacg aatgtactaa gttttgtaca cacatattaa tgttaccagt      2340
     gtttgatgag tggccagcct ctactggcca ttgcgttttg tctatactta aatgggtaat      2400
     gttatggtat gtataaattc tatcttgtgt catttctctt tttgtatcac gtttactttt      2460
     aactgtttga ctgtacatgt attatcttag tttttacgct taccaggtac tctgaagatg      2520
     ggctacgccc gaaacgcgtc agtacaaaag gaataaagat tttatcgtta cctgcatggt      2580
     tttattgtca gcagccaatc agcttttttt aacttctttc ttattaca                   2628
//
ID   Penelope-77_LMi repbase;    DNA;    INV; 2650 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-77_LMi.
XX
NM   Penelope-77_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2650
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 245-245 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(312..539,503..1819,1823..1978,1954..2157)
FT                 /product="Penelope-77_LMi_1p"
FT                 /translation="MMNPQAXVLRAQPKVHKENIPIRPVVNSRKSPAFHLX
FT                 KKLFNILKKIYTFENSRSIKNNREFIRQSTXSRYPVDLDAVNXLQVPSGSR
FT                 LASFDIVNLYANVPVKPTLDIINKNLNKFKPIAATEIKELMDLLELVLKYN
FT                 YFQFNNKFYVQPDGLAMGSSLSGLLAEIYIDHLENQILCSNYTLVGKIIYF
FT                 HRYVDDIILLFQGSKTELEELCNLFSQFHPNITFTIEHEVDKTLNFLDLAV
FT                 CIKNNRHTFTVHRKKTATDRTIHNSSFHPSTQKLAAYRSMVNRAVNIPMAQ
FT                 HDLANEIVLIKQIATNNGYPPSTIDHLLHNMKKNQNRNETTHLLPTDTKTT
FT                 KYSSIPFIGKASYKIANQFKKYGIKMSYYTNNKIKHVLPHSCNKPDKHKQP
FT                 GVYKIKCPDCPSFYIGRTGRSFAIRYNEHMSALRLKVHHKSAVATHLHESK
FT                 HSLPNINKDLTICHRQPSGTKLNILEALEIHKQQIIQPTDMLNEQTDSEYN
FT                 RLLSVFNEDCLFIQQPHKKTTQVRPLIPTSCKNTPSLSLSLSLSLPHLLNP
FT                 APLSEVILLSINFCLALEIIFLSCFRNNITTFQQFRQTTKTLGNIHSSFFG
FT                 LSCMIISLSKFKSNMPNVNKNYRLSVILKMLFILLFC"
XX
SQ   Sequence 2650 BP; 1011 A; 569 C; 377 G; 688 T; 5 other;
     cacataaagt agttcagttc tgaaaaaagc acttgaagaa gagcaaaagc aacagaatat        60
     cacatcaaaa gaagggctaa cagcagtsaa aaattgaaag aaaactaagc acttgctctt       120
     aaagctgata aaggcaatgc tacagttata atgaaggtgg atgactatat acaaaaaaca       180
     gaagagtttt ttgtcaaaaa caacatcaag gaagttaaga aggatcccac wcaatgtttc       240
     catagacaaa ttaaagaagc aatgaagaac agtaatttcc tcttcacagt caagaaacaa       300
     gagacataat catgatgaat ccacaagcac mtgttttaag agcccagccc aaggtacata       360
     aagaaaatat ccccatcaga cctgtggtaa actcaagaaa aagcccagca ttccatctaa       420
     asaaaaagct gttcaacatc ctcaagaaga tatacacttt tgaaaacagc agatccatca       480
     agaacaacag agaattcatt aggcagtcaa cgamctccag gtacccagtg gatctagact       540
     agcatctttc gatattgtaa atctgtatgc caatgtccca gtaaagccaa cactagacat       600
     aattaacaaa aatttaaaca aatttaagcc aattgcagca acagaaatta aagaacttat       660
     ggacctccta gaactggtgt tgaaatataa ttattttcag tttaataaca aattttatgt       720
     acaaccagat ggattagcca tgggatcaag tctctctggg ctattagctg aaatttatat       780
     tgatcattta gaaaatcaga ttctttgttc aaattataca ttagttggta aaataattta       840
     ctttcataga tatgtagatg atattatctt actcttccaa ggcagcaaaa ctgaactaga       900
     agaactatgt aaccttttca gccagttcca tcccaacatc acattcacca ttgaacatga       960
     agtagataag acattaaatt ttctggacct agcagtttgc ataaaaaaca acagacacac      1020
     cttcacagtc cacagaaaga aaacagctac tgacagaact atccacaaca gctccttcca      1080
     tccctccaca caaaaactag cagcatacag aagtatggtt aatagagcag tgaacatccc      1140
     aatggcacaa catgatcttg ctaatgaaat tgttttaatc aaacagatag ccactaataa      1200
     tggatatcca ccatccacaa tcgatcacct ccttcataac atgaaaaaga accaaaacag      1260
     aaatgaaaca acacacttgc taccaacaga caccaaaacc acaaaatatt ccagtattcc      1320
     tttcattgga aaagcatctt ataaaattgc caatcaattc aaaaaatatg gtatcaaaat      1380
     gagctattac actaacaaca agataaaaca tgtccttcct cacagttgca acaaacctga      1440
     caaacataaa caaccaggtg tttacaagat caaatgccca gactgtccca gtttttacat      1500
     aggcaggaca ggcagatcat ttgccatacg atataatgaa cacatgtcag ctctacgtct      1560
     aaaagtgcat cacaaatctg cagtagcaac tcaccttcat gagagcaaac acagcctccc      1620
     aaacatcaac aaagacctaa caatctgcca tagacaacca tcaggcacca aacttaatat      1680
     attagaggca ctagaaatac acaaacaaca aatcatccaa cccactgaca tgctgaatga      1740
     acagactgac agcgaataca acagattact ttctgtattt aatgaagatt gcctcttcat      1800
     acaacagcca cacaaaaagt aaacaacaca agtacgtccc ttaattccta cctcatgcaa      1860
     aaatacacca tctctctctc tctctctctc tctctctctt ccacatctcc taaatcccgc      1920
     cccactatct gaagtcattt tgctgtctat taatttttgt cttgctttag aaataatata      1980
     acaacctttc aacaattccg gcaaaccact aaaacacttg gtaatataca cagttcattt      2040
     ttcgggttat cttgtatgat aataagtttg tcaaagttta agtcgaatat gcctaatgta      2100
     aacaaaaatt accgactctc tgtcatctta aaaatgttgt ttattttgtt attttgttaa      2160
     cctactttgt taatcaaaac aaatgattgt aactatagct tcaatactcc ataactttaa      2220
     cgtaatgaat ttgatgtata cagtaccggc ataaacatgc cagttgcgaa aatgtgttgt      2280
     aaaatgtgtg caaatgcgga agttatttca ccaatgcagg agataatttc atctcgacaa      2340
     atgcaggtaa cacttcacaa tacttcactg tatgtttatt ataagatcct tgcattaacg      2400
     cctgcggcaa ctttctcgcc aaaaactaac aactgtgtcg ttcttctacc gttaggtgaa      2460
     aaactgaagc agatgtaaca caaaaataca gtaataaagt cctcgaaaat ggagttatag      2520
     ctccgaaacg cgtcggacaa taaaaacaat aaattattgt gactgaagac ggcttattat      2580
     tattataata taccctaacc taacggtaca gtcacggaca gcccacggcg aaatgtcgat      2640
     taataatgta                                                             2650
//
ID   Penelope-78_LMi repbase;    DNA;    INV; 4438 BP.
XX
AC   .
XX
DT   02-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-78_LMi.
XX
NM   Penelope-78_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4438
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (02-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(138..644,638..829,780..926,878..1321,
FT                 1261..1410,1526..1927)
FT                 /product="Penelope-78_LMi_1p"
FT                 /translation="MPTYGRLSAKMEGFMNQVINIVPRRAMDKVKLWFLTR
FT                 RKAMRAFMKVRFNRKCVRHDVIPNYARIKCKNYSKNFARIVRRSEMAFVKS
FT                 EIRDGYXVKSIVIKKASIIESEVEKLLPNVTFKEVSAPITTXIEEDKHIIF
FT                 CRQERKXKKLCGXTNSGXSYDVXRHXFELEARVVNLTNISFTDEEMFVLNK
FT                 VLITICHPVLINEQCRKRLLRSKQSLRCQSTKFRTNGNCGGSKDAKVPNSE
FT                 QTEIAVEVNKILRSCTMANSRRPDRNTYSKVSILSCKKKKLEYVLKSINSK
FT                 LQEEKALIVKADKGISSVIISDTAISSKHCNSLMKLGSQKLSVTQQKFHEP
FT                 LKSFVNLSNFLFPTTRDKRRVMTMNPKIPCLRSQIKLHKQNLPIRPLVNNC
FT                 SSPNYKINRFLNSKLKEYYTFTTHIHLKIPMTLLKGRILYIHYTYTLKNSY
FT                 DLVERLKSFEIPPGARLASLDIINLGYTNVPMMKHDILSKNGLAMGNSLAG
FT                 TLADIFIDSLECKFLASDSALVPQIIGYFRYVDDILLIFDGSEAEILELND
FT                 TFNTLHPNIQFTIEQKVNNKINYLDTTIVRQNHELVFSVFRKAICFDINIS
FT                 KYSCHPQSINGLIFGQ"
XX
SQ   Sequence 4438 BP; 1404 A; 812 C; 782 G; 1432 T; 8 other;
     tgtagtatat tcatataatg tgtttgtgct ccttagaatg taaacatccg aaatttgcca        60
     cagatctgat gatgatgtcg aaacgcgtaa tggtaaaatg aaawaggcga ccaagacatt       120
     taaataattt tttatgcatg ccaacgtatg gtcgcttgtc cgcaaaaatg gaaggtttta       180
     tgaaccaagt gataaacatt gtgcctcgtc gggcaatgga caaggtgaag ctgtggtttt       240
     taacaagaag gaaagcaatg cgcgctttta tgaaggtccg ttttaatagg aaatgtgttc       300
     gtcatgatgt gattccaaat tatgctagga taaagtgcaa aaattactcc aagaactttg       360
     ccagaatagt gcgtagatct gaaatggctt ttgtgaaaag tgaaattcgt gacggatacw       420
     aggttaaatc catcgtgatc aagaaggctt caattattga atccgaagtt gaaaaattat       480
     taccaaatgt aaccttcaaa gaggtgagtg ctcctatcac tactgmtatt gaagaggaca       540
     agcacattat attttgtaga caagaacgaa agstgaaaaa attgtgtggt twgactaatt       600
     caggaawttc ttatgatgta cakaggcaca mgtttgagct agagtagtta atctgactaa       660
     catttccttc acagacgaag aaatgtttgt tctaaataag gtcttaatta caatttgcca       720
     tcccgtatta ataaacgaac agtgcaggaa acgattgctg aggtcaaagc aatctctgag       780
     atgccaaagt accaaattcc gaacaaacgg aaattgcggt ggaagtaaat aaaattctac       840
     gttcctgcac catggcaaat agccgtagac ctgataggaa tacgtactca aaagtatcaa       900
     ttctaagttg caagaagaaa aagctttaat cgtcaaggca gacaaaggga tttctagcgt       960
     tattatttct gatacggcta tatcatcaaa acattgcaat tctttaatga agctgggatc      1020
     acagaagtta agcgtgaccc aacaaaaatt tcatgagcca ttaaaatctt tcgttaatct      1080
     ttctaatttc ctgtttccta caacacgtga caagagacgt gttatgacta tgaatcctaa      1140
     aataccttgt ttacgttccc aaataaagtt acacaaacag aatttgccga tacgacccct      1200
     tgtgaacaat tgctcaagcc caaattacaa aattaacagg ttcttgaaca gcaaacttaa      1260
     agaatattat acattcacta cacatataca cttaaaaatt cctatgacct tgttgaaagg      1320
     ctaaaatcct ttgaaatacc accaggggca cggctggctt cattggatat tatcaacctt      1380
     ggctacacaa atgttcccat gatgaaacac tgacatagtt caggataatc tgatacacta      1440
     caaaaaacta agtgttgggg aatctgtcga gttgatagaa ctgttgagaa tttctctctc      1500
     tttcaactca tttaattcat aataagatat actctcaaaa aacggactag caatgggtaa      1560
     ttctttggca ggcacgttgg cagatatttt tattgacagc ctggaatgta agtttttagc      1620
     ttctgactca gccttagttc cccaaattat tggatatttc cgctatgtag atgacatcct      1680
     gctaattttt gatggatccg aggcagagat tttggagctc aatgatacct tcaatacatt      1740
     acatccgaac attcagttta caatagaaca gaaggttaat aataaaatca actacctaga      1800
     cacgacaatt gtaaggcaaa atcatgaatt ggttttttca gtgttcagga aagccatatg      1860
     ttttgacatc aatataagca aatattcttg tcatccccag tctataaatg ggcttatttt      1920
     cggtcaatga tccacaggat gttaaaaata gacatgagtg aggaggatag agagagaact      1980
     ccagataatc atacaagtgg tagttggcaa tggatattca ggacgtagca ttcgtacgtt      2040
     gtttaaatca ataaagaaca ggaggcaacc caaaatagga aggataatgg caaatatgcc      2100
     acccttactt ataaaggtgc ctattgtgaa aggatgctaa tatactgaaa gaaaaaataa      2160
     gagtggcata caacacacag caaagcacct ttaaaaagtt aaaacatcaa gtggggatta      2220
     aagaaaggaa cattttcaaa aagtctgggg tgtacagaat ccaatgtggg gcttgtgaca      2280
     tattttatat tggtaaaact gggagggatt ttcacacccg atatagagaa catggttatc      2340
     caagtaacgc ttctgcatta ggacagcacc tgcagaaaaa ggacatcagc tgcaccaaac      2400
     tatcaaggcc taaagtactg cacttggcac ccttagtcgc ttctagatgt gatggaagag      2460
     tttgaaattt acacacacag aatctgtaac cacaccatat gctcaatgag caggaaggtt      2520
     tcaatagaaa ttggtacttt cagttgtttg aggataccct aagaggtctt aaatagtttt      2580
     ctacacttca ccacataccc tttccagcat atgcctctct gttatgccat ggaccaccta      2640
     tgctcactgt caaatatctt ccaccccttc tacacatgtt gccccccctc ctccttacct      2700
     ccctttattg ttcgtcatat ccaaaaattg tgggaaaaat aaaaagagct gcctgctctc      2760
     tttgatgatg ttaatcagtt atcactgttt gtgtaacttt caattctggc atacccttat      2820
     atttatattt taatatctcc agttaaggta cttgaattat ttattccttt taatgtatac      2880
     tataatgctc tcactaggag gtgttcatgc acctttgtta tttcatttca atattagaca      2940
     tggctcaaac atggcaagtt atatttctta gaaaaaatcc ttgtttttta tcttatgcac      3000
     cacaggcata gtctacaacc ttctattaac tgatattgat catgtaatgt atgaagacct      3060
     tattataatg tgattctagt tgatggggca catcttgtct tataaccatc aagacattat      3120
     ccatcttcca gtgtattcct ttccctcttt ttaacattat ttcattttat tgtatgactg      3180
     tggatgatca gatttagatt agatccatgt atgattatgg ttgttttaag attatgagtg      3240
     cactacaggt acaatctgta acctataata cctttacttt ttcttgtaac cataaggtga      3300
     ttatcaaatt tctagtgaat tttccttgtt cctctttttg actctgttcc attttattca      3360
     atgacttatg gatgatctgt tttatattct gtccatgcat aattattttg ttttaaaact      3420
     atgactgaaa ttactgtgtt cttcaaatac taacttcaac atagtatccc cctgtctcaa      3480
     cactgttcta ttttaaatat agactgtgat ctaagtcatg cccatgtaag actattgtag      3540
     ttgtatgaat tgtgacctta ttattatatt caaatgtatg ccttaacatg gcattctagt      3600
     tgatggggca catgcatcta tttgttcact atattttatg taacatgtat cttggtaaat      3660
     aatttcttgt aaaaaagaga gagagaggag atgaaaaaag gtccccacct ctcctatcca      3720
     catcttgatt gccccccccc ttttctcatc ttcctactct tccctacttc cctctcttca      3780
     tcaaatgata tgtagtgcaa tacctgagta taagcatgta ttatgaccca ttggcacatt      3840
     gggttctgcc tgtgtatata tattatattg tcagttggtt gtattgattt tttgtacgcc      3900
     cagtcccagt aatatgtttt aataaggtat ctgatatttt cttttgactc aacacatctt      3960
     gtagccatgt ttttcgtagt ttctatgtca gttgacagtg cagagggcgc aagatgatgt      4020
     tacataaatt cattcaaata atatttaagt ttaaccctgc gccatctggc ggctattgga      4080
     cctaatttac ctgttacggt gttcccccct tctcaccaca gtttggcatg agattctagt      4140
     cgacacacct tgactagaca tccacgatgg tggtttatat tttagttagt catctccaat      4200
     aagatgtatt ttaattacca tcgtttttta aaaagttgta agtatatttt catataatgt      4260
     gtttgtgctc catatgaatt ttatgattaa gaactgtaaa catccgaaat gtaatttatt      4320
     ttttgccaca gatctgatga tgatgtatcg aaacgcgtaa tgataaaata aaaacagtgc      4380
     gaccaagaca tttcattttt atgcatgccc aaaaatggaa ggttttatga accaagtg        4438
//
ID   Penelope-79_LMi repbase;    DNA;    INV; 2618 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 20.01, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-79_LMi.
XX
NM   Penelope-79_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2618
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 246-246 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(301..663,662..1615,1588..2184,2188..2415)
FT                 /product="Penelope-79_LMi_1p"
FT                 /translation="DTQRLDASRTVVNLSSHSISNAATEVLSKGLNFAITP
FT                 QRIPTEEIIVSVEAALRHTSTIEAEKIRQETVRILSRAKPPKHNLRREERA
FT                 AITELKNNNEIVYFRQIKGTPRSSWIQCSMRIRDERIIKRSIYNELKTDPT
FT                 AKIIRKTQSAIKDSRIDADTAKGLIPSVPVPPRIYGVPKLHKNGQPLRPIV
FT                 DGINSPTYNLAKFLASKLRPLVGKTDSYVKNSTHFIERIKEETILPTDIMV
FT                 SFDVKSLFTNVPVDETVRILQEHIPPDICDLVQLCLSSTYFKWQERYYEQT
FT                 DGVAMGSPLSPLAADIFMEAFEATALCSAPLRPRCWFRYVDDTFAIWPHGE
FT                 MELHKFHEHLNKLHKKIQFTLEIEKDGAIPFLDVEVYRTRQGTLGHRVYRK
FT                 PTHTDRYLHAQSNHHPAQKNSVIRSLTIRAQRLSDEDNKTAGSTNRQQNSW
FT                 LNKLETTFLANGYNHRVIHTAMDTNKRNSSRQEVNKKQPAARLPYVKNVTD
FT                 RIAKHLRRVGVQPFFYSSHKIKDVLGSTKDNIEALHASGVYKVECECGEVY
FT                 IGETGRAVATRIREHERYIRLGQHNKSAVAEHQQDCSKKIKFNDARILAKQ
FT                 PGMVKRKIREAIEIVKHPNNMNREDGLRLAPSWLPAITAKAALTTQHASVT
FT                 SKQLPPRGPRPAGEKRKPSPHSPMNTNHVSLCKKQRLTPTPSTSASYQNKV
FT                 PFFRQKFTNNIAYF"
XX
SQ   Sequence 2618 BP; 884 A; 646 C; 563 G; 525 T; 0 other;
     tggagatgtt aaggaagaag aaagggaaac taatcaacga cttaatcata tgaggaggtg        60
     cgggaccagg acatcatacc taaattcctg cagctaaacc gaaccaacac caaaagcaag       120
     tcagagccag tatatcactg ctgaggagcg gaagagcaca aagaagattg cttatcagct       180
     tcactgtcgc cgaatgacca acgtcgacaa aatcactcac ttgcaagcat gttctactaa       240
     tgaaactgtt gctagacgtc agaagagaaa attcgagcag ctcgataaaa cgacacgtaa       300
     gatacgcaac gactagatgc atctcgaacg gtggtaaatc tttcgtctca ctctatcagc       360
     aatgcagcca cggaagtact tagcaagggt ctaaactttg caatcacacc tcagcggatc       420
     cccacagaag aaatcatcgt gtccgtggaa gcagcactcc gtcacacatc cacgatagaa       480
     gcagagaaaa ttcggcagga aactgtccga atattatcac gtgccaagcc gccgaagcac       540
     aacctcagac gcgaggaaag ggcagccatc acagaactaa agaacaacaa tgaaatagta       600
     tacttcaggc agataaaggg aacgccacgg tcatcttgga tacagtgcag tatgaggata       660
     agatgaaaga attattaaac gatccatcta caacgaactg aagacggacc ccacggctaa       720
     gataattcga aagacgcaga gtgcaattaa ggactcaaga attgacgccg acacagccaa       780
     gggactcatt cctagcgttc cagttccccc tagaatttat ggagtgccaa agttacacaa       840
     gaatggccag cctttacgac cgatcgtgga tggaattaac tcgccgacat acaatttggc       900
     aaagttccta gcctccaaac taagacctct agttggcaaa actgactcgt acgtgaagaa       960
     ctcgacacac tttatagaac gcattaagga agaaacaatt ttacccacgg acatcatggt      1020
     cagcttcgac gtaaagtcat tattcaccaa tgtgccagta gacgaaactg ttcgcatcct      1080
     acaagaacat attccgccag atatatgcga cctggttcag ttgtgtttat cttcgaccta      1140
     cttcaagtgg caagaaagat actacgagca aacagacggc gtagcaatgg ggtctccctt      1200
     atccccgttg gcagccgaca tattcatgga ggccttcgaa gcaacggcac tttgttccgc      1260
     ccctttacgc ccaagatgct ggttcagata cgtggacgat acgttcgcaa tatggcccca      1320
     cggtgagatg gagctacaca agtttcatga acatctgaac aaattgcaca agaagatcca      1380
     atttacatta gagatcgaga aggatggcgc tattccattc ctagatgtgg aagtttatag      1440
     aactaggcaa ggcacacttg ggcacagggt atatcggaag cctacacata ccgacaggta      1500
     tttgcacgcc caatcaaacc accatccagc acagaagaac tctgttatcc gctcactgac      1560
     gattcgcgcg cagcgactaa gtgatgaaga caacaaaaca gctggctcaa caaactagaa      1620
     acaacatttc tggcaaatgg ctacaaccat agagtgattc acaccgccat ggacacaaat      1680
     aaaagaaaca gcagtaggca ggaagtcaat aaaaagcagc cagcagcacg cttaccgtat      1740
     gtaaaaaacg tcacagatcg gattgctaaa catcttcgcc gggttggagt ccagcctttc      1800
     ttctatagta gtcacaagat caaggatgta cttggttcca caaaggacaa catagaggca      1860
     ctacacgcat caggagtata caaggtggaa tgcgagtgtg gggaagtata cataggtgag      1920
     acagggaggg cagtggcaac acgcatacgc gaacatgaac gctacattcg attaggccaa      1980
     cacaataaat ctgcagtagc cgaacaccag caagattgca gcaaaaagat aaaatttaac      2040
     gatgccagaa tactcgccaa gcaaccaggg atggttaaac gcaagataag ggaagccatc      2100
     gaaattgtaa aacaccctaa taacatgaat agagaagatg gactcaggct tgccccctct      2160
     tggctaccag ccatcacagc gaaataggcc gcactgacaa cacaacacgc gagcgtcact      2220
     agtaagcaac tgccgccgcg cggcccacgg ccagcaggag agaaacggaa gccctcaccc      2280
     cattcgccga tgaacaccaa tcatgtctcg ctatgcaaga agcaacggct aacccccact      2340
     ccctccacct cagcatccta tcaaaataaa gttccattct tccgccaaaa attcaccaat      2400
     aacatcgctt atttttaaaa attatgacgt aatgtctaaa tgaaagtaat ataaagtgta      2460
     gtaacaacca gctcacatca gtatacccag atgaaggcca ctgtaacgtt ggccgaaacg      2520
     tcggttattt aagtaatagc cttacatcat gacgcggtac aacacccaga aaacttttat      2580
     gtcatctgac tctggccgcg gaagcctacg taattata                              2618
//
ID   Penelope-7_BTa repbase;    DNA;    INV; 2982 BP.
XX
AC   .
XX
DT   25-JUL-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a partial
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; TSD; Penelope-7_BTa.
XX
NM   Penelope-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2982
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 961-961 (2018).
XX
DR   [1] (Consensus)
XX
CC   A partial consensus sequence. Incomplete at the 5'-end. Some
CC   shorter insertions associated with TIRs are flanked by ~10-bp
CC   TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           391..2706
FT                 /product="Penelope-7_BTa_1p"
FT                 /translation="MLVEKFKHDFLQLCIDDVHALISNISRHLNQIIYFLK
FT                 TTLPEVVIVDFLHNLTLRNQKLWRRVNKNLAKKFNVLKGNSLKKYHQTFQP
FT                 FFNKKDAWVENLSDTQIPDFAMRVLCLGPKFYIPFFKFPSEKSIFRPVPLD
FT                 RIIANIENTLRFHPPFIDIIRGKVCHVIRNYIYLAKRVSGHENINVSSNRR
FT                 FKECFYMRSLKSDIIHTFWFIKDNPQIKIILADKTNKTVIMNSVDYNTKMQ
FT                 TLLDDRTTYKQINTSLVPSQSAKNNYLAKSWYAAGYISEHLANSLKVSGAL
FT                 VSRIYGLIKLHKPNNPMRPIVSSVGCPFYTLSKMYSSILVNIVGKSNFHIA
FT                 NSFEFYNFINRMEVPDGYIFISLDVESMYTNISSDLALECVERRWNEIQEH
FT                 CSIPKEQFLYGLKVCINSTVFQFDSTFYQQVSGLAMGGSVSSVLAEIVMEF
FT                 FDDDLHANIPFPILNYKRYVDDSFSMVCKQHTGLILEFCNSRNPAIQFSLE
FT                 EEIDGKINFLDLSVHREGNLAVCQWYQKPTSSGRYLNYLSVQPEIYKKNVV
FT                 TNLAQRIVRLTDHQFLSETIKIGKRLLLENCYPSTLVDREFSKVLREKGSG
FT                 KHQNYGCKKGQIKFDKLISLPYVPLLSESLANVLKKYGFSVVHTKYNDLGF
FT                 LMSNLKSKRTNDLVAGVVYYVQCQDCEVGYVGQTSQVLKKRLSQHRYGKGE
FT                 KTALQHHQDAEVHRFDFGGAKILASEKRYFPRLLLEMMNILKRRNKLCNYR
FT                 ADVDGLCASYHQFFLPEGAGD"
XX
SQ   Sequence 2982 BP; 870 A; 543 C; 570 G; 999 T; 0 other;
     actcttgtca ctatacgctc cagcgttaga gcctttcagt gcgttggtat atttctgagc        60
     gagattcaca tccttttaag ggtgaggatt gcaatttaac gaacccaatc ttggagaggc       120
     agcgagaagt tctaggggaa catcacttgc tagcagagat gtaaagacta tcggcgtaat       180
     acaaaggaaa agcatactta gacattccaa ttaacacttt tgataatctt tatcttaagt       240
     ttacgttccc tgaatttcaa ctctaaaact gaatttacct tagtttagtt ggaaatcttt       300
     aattgctgat ttttagtaca attgtagaaa aaaacttgta ttagcaatga cattgatagc       360
     tcagttttaa gaggaaaaaa caaggcgcgc atgttggtag aaaaattcaa gcatgatttt       420
     ttacaactgt gtatagacga tgtccatgct ttgattagta acatatcaag gcatcttaat       480
     caaattattt attttctaaa aacaacactg cccgaggttg ttattgttga tttcctacat       540
     aatttaactc tcagaaacca aaagctgtgg agaagagtca ataaaaatct tgctaagaaa       600
     tttaatgtat taaaaggtaa ttctttaaaa aagtatcatc aaactttcca gcctttcttc       660
     aacaaaaagg acgcgtgggt ggagaatctg tctgatactc aaataccgga ttttgcaatg       720
     agggttctat gtcttgggcc taaattttac attccgtttt tcaaatttcc gagtgaaaaa       780
     tctatttttc gacctgtgcc tttagatcgc atcattgcta acatcgaaaa tacgctaaga       840
     tttcatcctc cgtttattga catcatcaga ggtaaagttt gtcatgtcat tagaaattac       900
     atctatttgg cgaagagagt ttcaggccat gaaaatatca atgttagttc caacaggcgt       960
     tttaaggaat gtttttacat gcgctccctg aaaagtgaca tcattcacac tttttggttc      1020
     atcaaagaca atcctcaaat taaaattatt ttagctgaca aaaccaataa aaccgttatc      1080
     atgaatagtg ttgactacaa tactaagatg caaacgttgt tggacgatcg tacaacgtat      1140
     aaacaaatca acacttcact agtgccctcg cagtccgcca aaaataatta tttggcaaaa      1200
     tcctggtatg cggcaggtta catctctgaa catctagcta attcacttaa agtctcaggt      1260
     gccttggtgt cacggatata cggtttgata aaactgcata agccaaataa tccaatgcgc      1320
     cccattgtta gctccgttgg atgccctttt tacactcttt caaaaatgta ctcgtcaatt      1380
     ttggtcaata tcgtgggtaa atcaaatttt cacattgcca attcttttga attttacaac      1440
     ttcatcaaca ggatggaagt gcccgatggc tacattttta tttctttaga tgttgaatct      1500
     atgtacacca atatttcttc tgatctagcc cttgaatgtg ttgagcgccg gtggaatgaa      1560
     attcaagagc attgctccat tccaaaagag cagtttctat atggtttaaa agtgtgcata      1620
     aattcaactg tttttcaatt tgattccacc ttttaccaac aagttagtgg ccttgctatg      1680
     ggtggcagtg tctcttcggt gttggctgaa attgttatgg aattttttga tgatgatttg      1740
     cacgctaaca tacctttccc tattttgaat tataaaagat atgttgatga cagtttttct      1800
     atggtttgca aacagcatac gggacttatt cttgaatttt gcaattctag aaatcctgcc      1860
     attcaatttt ctctggaaga ggaaattgat ggcaaaatta attttcttga tctgtcggtc      1920
     catcgtgagg gtaatttagc tgtttgccaa tggtaccaga agccaacttc atcagggcgt      1980
     tatttaaatt acctttctgt gcagcctgaa atttacaaga aaaatgttgt caccaattta      2040
     gcacagcgaa ttgtgcgtct taccgaccat cagtttctct cagaaactat aaagataggg      2100
     aagagattgt tgctcgaaaa ttgttaccct agcactcttg ttgatcggga attctcaaaa      2160
     gtgttgaggg aaaaaggaag tggaaaacac caaaattatg gttgtaaaaa gggtcaaata      2220
     aaatttgaca aactgatttc tttgccatat gtgccccttt tgtcggaaag tttagcaaat      2280
     gttttaaaaa agtatggatt ttctgttgtg cataccaaat ataacgatct cggtttttta      2340
     atgtccaatt tgaaatcaaa aagaactaat gacttggtgg ctggcgtcgt ttactacgta      2400
     cagtgtcagg attgtgaagt cgggtacgta ggacagacat cccaggtact aaaaaagagg      2460
     ctttctcaac atcgatatgg gaaaggggag aagactgcct tgcagcacca ccaagatgca      2520
     gaggtgcatc gctttgactt cgggggggct aaaattttag cctccgaaaa gcgttatttt      2580
     ccgcgtcttc tcctcgaaat gatgaatatc ttgaagcgca ggaacaaact ttgtaattac      2640
     cgcgctgatg ttgatggtct ctgtgcctct tatcaccagt ttttcctccc agagggagct      2700
     ggtgattaaa tttccatcct tttttgtaat ctttgtcttg tgtgctttga ttttgctgca      2760
     ctgtgccgag tctgtttacc tggtaatcag tctcggtctc gcaattacag cggagcgacg      2820
     gctcgttttt gtttttaatt tttttttccg gttgataatg aaattgttat tattttgaaa      2880
     cgtcccgggt tttgtttatt cctttttctt tatttgcagc cttttcccca aattaagttg      2940
     ttcttttatt acgtgtattt tggctgatta agttgtttct ca                         2982
//
ID   Penelope-7_CoFl repbase;    DNA;    INV; 1702 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-7_CoFl.
XX
NM   Penelope-7_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-1702
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2412-2412 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1210
FT                 /product="Penelope-7_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="LFNNICFDAVKMAIEKFWHHIHNKINLSLTDFLNVIE
FT                 FIMNNNYFQFNNNFYLQRRGSAMGSPISPVLADIVMRDLETACLNLCPFNI
FT                 PVYFRYVDDILLCVPVDKVEYVLNVFNSYSHFLNFTIEKSENNTINFLDMT
FT                 IVANNDSSISTNWFRKDTHSGSYLNFYSHCPISQKKAIVSHLVDKNYKLSS
FT                 PEYFSNNFKYIYTVLLANNYPLDFIESCIKKRLYFLKSINNSQNNISPVNN
FT                 AIGSLVIPYCRELDYKLRVFCSKSFINVIFKSSNKLPFNRMYGKDILKKLN
FT                 NPNVVYKIDCSDCSNCYIGQTLRKLSIRLNEHKSDIKHKREKSALYQHHLD
FT                 TGHSFNFSDNEINIIDIEQNYYKRLLSEMIFIEKTNNFNRMLDCDNLNKVF
FT                 KRYIHLLLK"
XX
SQ   Sequence 1702 BP; 582 A; 207 C; 260 G; 653 T; 0 other;
     tctatttaat aatatatgtt tcgatgctgt taaaatggcc attgaaaaat tttggcatca        60
     catacacaat aaaattaatt tatccctaac agatttttta aatgttatag aatttataat       120
     gaataacaat tattttcaat ttaataacaa cttttatttg caaaggaggg gctctgctat       180
     gggaagtcct atcagtcctg tccttgcaga catagtcatg agagaccttg aaactgcatg       240
     tcttaatttg tgtcctttta atattccagt ttatttccgt tacgttgatg acattttact       300
     gtgtgttcct gttgataaag ttgaatacgt tttgaatgtt tttaatagtt atagtcattt       360
     tttgaatttt actattgaaa aatctgagaa taatactata aacttcctgg atatgactat       420
     agtagccaat aacgattcgt ccatttctac taattggttt agaaaagaca ctcattctgg       480
     ttcatactta aatttttatt cacattgtcc tatttcacag aaaaaagcaa tagtttcaca       540
     tttagtagat aaaaattaca aactttcttc acctgaatat ttttcaaaca atttcaaata       600
     tatttataca gtattgctag caaataacta tcctttagat tttatcgaaa gttgtataaa       660
     gaaaagatta tattttttaa agtccattaa taatagtcaa aataatatta gtcctgttaa       720
     taatgctatt ggctcattag ttatacctta ttgccgtgag ttagattata agttaagggt       780
     attttgttca aaaagtttta ttaatgttat ttttaagagt agtaataaat tgccgttcaa       840
     tagaatgtat ggaaaagaca tattgaaaaa gttgaataat ccgaatgttg tctataagat       900
     tgattgctca gattgcagta attgttatat tggccagaca ttaagaaaat taagtattag       960
     gttaaatgag cacaaaagtg acataaaaca taaacgtgag aagtctgcct tatatcaaca      1020
     tcatttagac acagggcact cttttaattt tagtgacaac gaaatcaaca ttatagatat      1080
     agaacagaat tattataaga gattattgtc tgagatgatt tttattgaaa agacaaacaa      1140
     ttttaataga atgttagact gtgataattt aaataaagtt tttaaacggt atatacactt      1200
     gttacttaag taaattaata tttgtgtttt tatatccttt attgtaattt gaatttatcg      1260
     cgcgttttca ctgtatagat tgaatatata tgtaacacat gttggtttcg tctatatatg      1320
     tatgtaaaat ttgtatttga taatttgaat atgtaaggtc agtcgactat gtgccctcgt      1380
     tgggtactga cgttgtttga atcttcgaac aaaataatct ttttgtaagt ctctaatttg      1440
     taactgtatt taaaattgtt tattattgtt cttagttttt aaaatgttat tagatgtgat      1500
     aacgtggatg tattgttacc tcaagttaat ttatttcgtg tatattttat aaaattagga      1560
     cttgaaaagg ctcctaccca aagaggagag aaacgtcgtc aggggatata ataaaaaatt      1620
     atatacaaca gcaatagcca ttggttttat tatttgatga atttcgtctt gctcgctgtt      1680
     gttggagtca taaacatcat aa                                               1702
//
ID   Penelope-7_FoCa repbase;    DNA;    INV; 2870 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-7_FoCa.
XX
NM   Penelope-7_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2870
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2740-2740 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.7% identical to consensus. The sequences 1-206 and 2660-2866
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..2655
FT                 /product="Penelope-7_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MSSDADVMDQYICRGWKHLINQLRPLYGGALVKDIRK
FT                 LEFMYKRQIQFHNNTVFLRRCQKMKIIPRGLHNQFITKKFGSRSYFTKIEE
FT                 ETNQKILKGLIKSNFQDLYEIDKKIYSLRNQIRCKLPQYWHLICHLINRTR
FT                 QKTNDCIRNRQINKFNTLMNEKLSLITKENPQTIKKVIHNLSSHPLSENEQ
FT                 KLLSLGLNYSLPIKDIRVTMMDTAAIIDLKLHETDLEEREKEQVRAGVSHI
FT                 MKKQINSGNYMNKIDTWISSSIKSLTTNNNICITKADKGNAVVILDKNDYN
FT                 QKMQTMINEGPYDELIQDPTPDFTDLIEVHSSSLKTNEKLSDAEYSKINQK
FT                 TPRAPLIYGAPKVHKPDTPLRPVVDFRSSPTYNLAAMLSNILKKVASKHEY
FT                 TVKNGEEFVKGIKNIKIRPGDQMISFDVVSLFTKVPIKETLKIIKKRLQDY
FT                 DNLNELTKLSINDLMELIKICLKSTYFKYNSKFYHQTEGTAMGSPISPIVA
FT                 EIFMQELEKKLVKNNRNIIYWRRFVDDVFAIIRIRRKSHILSLINSFHESI
FT                 QFTFEDEQQGQLPFLDLMLYKKPDNSIGHQIYRKPTHTNLYLNYHSFHPPA
FT                 HKIGVTDTLLTRALRLSDEDHLENEIKYTIKILEENNYPRKMIEYRLKKVK
FT                 NKMQYNNNNNSLDEPVKRIILPWAGETTTKIARFLERKLEMKIGYIPGPKL
FT                 SRMLTNTKEKPRTINCGIYSIQCSNCPAKYIGETGRDYTTRIQEHIHAIRS
FT                 GNVRLSPVALHMHEHEHNLDPNSYKLILKEPRRYFRKFKEALFIKSTTNKM
FT                 NISRGVAVSPIWSSTLTNFLTYTQ"
XX
SQ   Sequence 2870 BP; 1150 A; 543 C; 447 G; 730 T; 0 other;
     aaaaaaaatt tataaaaaaa tttataaatg taaccatgta attatttgat atcaaacaaa        60
     acttgacttg gaggaggaaa cgtacacatg aattttagtt tacaaatata tttttgcctg       120
     atgaagaaat tctgtatgaa tatcgaaagc ttgcaacaat aaatacttca agttaaaatg       180
     tcctctgatg ccgatgtaat ggatcaatat atatgtcgag gatggaaaca tttaataaat       240
     caactaagac cgctctacgg tggagccctg gtcaaagata tccgaaaact ggaattcatg       300
     tacaaacgtc aaatccaatt ccacaacaat acagtatttt taagaagatg ccaaaaaatg       360
     aaaatcatcc ccaggggact tcacaaccaa ttcatcacaa aaaaatttgg ctcaaggtct       420
     tattttacaa aaattgaaga agaaacaaac caaaaaatcc tcaaaggact catcaagtcg       480
     aattttcaag acctatacga aatagacaag aaaatatatt cactccggaa ccaaattaga       540
     tgtaaattac cacaatattg gcatttgatt tgtcacctaa taaatcgaac acgacaaaaa       600
     accaatgatt gtatcagaaa tcggcaaatc aacaaattca atactttaat gaacgagaaa       660
     ttaagcctga taacaaagga aaatccacaa accattaaaa aagtcatcca taacttatca       720
     tctcatccac tctcggagaa tgaacaaaaa ctactctcat taggtctgaa ttactccctc       780
     ccaatcaaag acatacgtgt gacaatgatg gatacagctg caattattga cttgaaactg       840
     cacgagaccg atttggagga gagagaaaag gaacaagtca gagccggagt atcacacatc       900
     atgaaaaaac aaattaatag tggaaactat atgaacaaaa ttgatacttg gatatcctca       960
     tcgatcaagt cccttaccac aaataacaac atttgtatta ctaaggcaga caaaggaaac      1020
     gcagtggtaa ttttggacaa aaatgattat aaccaaaaaa tgcagacaat gatcaatgaa      1080
     ggcccctatg atgaactcat tcaagatcct actccagatt tcacagattt aattgaagtc      1140
     cactcaagtt cattgaaaac aaatgaaaag ttatctgatg cagaatactc caaaataaat      1200
     caaaaaactc ccagagctcc acttatctac ggtgcaccta aagtgcataa accagacaca      1260
     cctctccggc cggtggtaga tttcagaagt tcccctacat ataatcttgc agcaatgttg      1320
     tccaacattt tgaagaaagt agcctcgaaa catgaatata ctgtcaaaaa tggagaagaa      1380
     ttcgtgaaag gaataaaaaa tatcaaaata cgaccagggg atcaaatgat ttcttttgat      1440
     gttgtctcac ttttcacaaa agttcccata aaagagaccc tgaaaatcat caaaaaaaga      1500
     cttcaagatt atgataacct aaatgaactg acaaaactct caatcaatga tctaatggag      1560
     ctgattaaaa tttgcttaaa atccacctat tttaaataca atagcaaatt ttatcaccaa      1620
     actgaaggta ccgctatggg atcccccatc tcaccaatag tcgcagaaat atttatgcaa      1680
     gaattggaaa aaaagcttgt caaaaacaat cgcaacatta tctactggcg tagatttgtg      1740
     gatgacgtct ttgccataat aaggattcga aggaaaagcc acattttaag tctaatcaat      1800
     tcgttccatg aatccattca attcacattt gaggatgaac aacagggaca attacctttc      1860
     ctggatctca tgctgtacaa gaaaccggac aactcgattg gtcatcaaat ttacaggaag      1920
     cctacgcata caaacttgta cctgaattat cactcttttc atcccccggc acacaaaatt      1980
     ggcgtaacgg ataccctgct gacaagagct ttaagactgt cagatgaaga ccatttagag      2040
     aatgaaatca aatacacaat caaaatcttg gaagaaaata attacccacg aaaaatgatt      2100
     gaatacagac tgaagaaagt caaaaacaaa atgcagtata acaataacaa caactcacta      2160
     gacgaaccag tcaaaagaat tattttaccg tgggcaggtg aaaccaccac aaaaattgca      2220
     cgatttctag aaagaaaact agaaatgaaa ataggttaca ttcctggccc gaagttatcc      2280
     agaatgctaa ccaacactaa agagaaaccg agaacaataa attgtgggat ttattcaatt      2340
     caatgcagta attgtccagc aaagtatatt ggagaaacag gacgtgatta tactacaaga      2400
     attcaggaac acattcatgc cattagaagt ggaaatgtaa gattatctcc tgttgctcta      2460
     cacatgcatg aacatgaaca caatttggac ccaaattcgt ataaattaat tctaaaagaa      2520
     cctagaagat attttcggaa atttaaagaa gcactgttca tcaaaagtac cactaacaag      2580
     atgaatattt cgagaggagt cgcagtcagc cctatctggt caagtacact aacaaacttt      2640
     ttaacatata cacaatagcc ctcaaagtcc acgtaaaaat ttataaatgt aaccatgtaa      2700
     ttatttgata tcaaacaaaa cttgacttgg aggaggaaac gtacacatga attttagttt      2760
     acaaatatat ttttgcctga tgaagaaatt ctgtatgaat atcgaaagct tgcaacaata      2820
     aatacttcaa gttaaaatgt cctctgatgc cgatgtaatg gatcaatata                 2870
//
ID   Penelope-7_LMi repbase;    DNA;    INV; 2645 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-7_LMi.
XX
NM   Penelope-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2645
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3182-3182 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(72..926,826..2346)
FT                 /product="Penelope-7_LMi_1p"
FT                 /translation="MSKISQKSGQLRKKKHLFILHFVTCRDSLAYQIFKTE
FT                 GNIPTARVQRIYDYTESALLRERIHFTRREMDIVDRKLLQLHLLISSTVEI
FT                 DLWNKIDYLTFSSMEAIMETTTNRHKKKFEKLQPKVQCSNNIVMSSTVVNK
FT                 SARALSQDEISVLAKGGNYAIAPMKVPVEEIIANVEAGIRTLPKETANAIR
FT                 IETTRVLCHSKPLNSNLTKGERKALKDLNTDEEIVVLPADKGNATVVLNKE
FT                 DYRSKILIHLTSGHYKKTEERPYSQRTEENKRTDKVIHFDSERGPQDTTKK
FT                 LKKDPTASVLKKTNALIKSSTSIQKEDKKALLKSEAMCPRLYGLPKIHKTD
FT                 FPLRPIVSAINSPTYEVARYLATRLQPYIGKTDSYIRDSRHFIEKIEGLIL
FT                 APGDILVSFDIVSLFTMIPINEVMVYITDLFPGDLTALFRHCLTSSQFQWD
FT                 DEFYEQVDGVAMGNPLGPAIANFYMERFEESALEKANRKPNRWFRYVDDTF
FT                 VVWSHGKKALEDFFNYLNSVNPKIQFTMEMENDNEISFLDVSVMRQTDGSL
FT                 KHKVFRKVTHTDRYLHKDSNHHPQQKRGVIKSLIDRAKRICTPEHLDAELQ
FT                 HLMQAFEKNGYTRKEVNRVLRPRKGKQKDSNKTQRWKNTVSLPFIKTVTDQ
FT                 IGKILRKHDIRPVFKPTKKISQALRSVKDKRPPLSSSGVYKIPCSCGKVYI
FT                 GTTKRSVNTRLKEHKSLCRLGRIEKSAVAEHVFQSGNHEVKFSETEILSTT
FT                 TNYYPRLYREAIEIYKHGDNFNRKEEAMKLNDIWTVALQSR"
XX
SQ   Sequence 2645 BP; 895 A; 521 C; 545 G; 684 T; 0 other;
     gaagattcaa cagcatattt cagccggtcg tgaaagcctt cactgcatga tcagaagact        60
     ctgcggggag gatgtctaaa atcagtcaga agtctggaca attacgtaag aaaaaacact       120
     tatttatttt acatttcgtt acgtgcagag attcgcttgc ataccaaatt tttaaaacag       180
     aagggaatat tcccactgcc cgagttcaaa ggatttatga ttatacagaa tcagcattac       240
     tcagagaaag gattcatttt acaagacggg agatggatat tgttgaccgt aagttgttgc       300
     aacttcattt actcatttct agtactgtag aaattgatct ctggaataaa atagattacc       360
     ttacgtttag ctccatggaa gccataatgg aaacaactac taacaggcat aagaagaagt       420
     tcgaaaaatt acaacctaag gtacaatgta gtaacaatat tgtgatgtcc agtactgttg       480
     ttaataagtc agcaagagca ttatctcaag acgagatttc tgtccttgca aagggaggaa       540
     actatgccat agcacctatg aaagtaccag ttgaggaaat tattgcaaac gttgaagcag       600
     ggattcgaac cctccccaaa gaaactgcaa atgcaattcg aatcgaaacc actagagttc       660
     tgtgccacag taaacctttg aacagtaatt taacgaaagg agagagaaag gctctaaaag       720
     atttaaatac agatgaagag atagtagttc ttcccgctga caagggcaac gctactgttg       780
     ttttaaataa ggaggattat cgtagcaaaa ttttgatcca tttaacctca ggacactaca       840
     aaaaaactga agaaagaccc tacagccagc gtactgaaga aaacaaacgc actgataaag       900
     tcatccactt cgattcagaa agaggataag aaagccctat tgaaatctga agcaatgtgt       960
     cccagacttt atgggctacc caagatacac aaaaccgatt ttcctctgag accgatcgtc      1020
     agtgctatca attcaccaac atacgaagta gcaagatatc tggcaactcg tctacaacca      1080
     tacattggta agactgactc ttatataaga gactcacgtc attttattga gaaaattgaa      1140
     ggactaatcc tggctcctgg agacattctt gtaagttttg atatagtgtc gttgttcact      1200
     atgattccta tcaacgaagt tatggtttat ataacggatc ttttcccagg agatttgacc      1260
     gctctttttc gacactgcct tacttcgagt cagttccaat gggatgatga gttttatgag      1320
     caagttgacg gtgtcgcaat gggtaacccg ttaggtcctg caatcgctaa tttttacatg      1380
     gaaagattcg aagagtcagc tctggaaaaa gcaaatagga aaccgaatcg ttggtttcga      1440
     tacgtggatg acacatttgt cgtttggtca cacggtaaaa aagcattgga agacttcttt      1500
     aattatctga atagtgtaaa tccaaagatc caattcacta tggagatgga aaatgacaat      1560
     gaaatatctt tcttggatgt ttcagttatg cgacagacgg atggaagttt gaagcataag      1620
     gttttccgga aagtcacgca tacggacaga tacttgcaca aggattccaa ccatcatcct      1680
     cagcaaaaga gaggggtcat taaaagtctt attgacagag ctaaacgaat ttgtacgcca      1740
     gaacacctag atgccgagtt acagcatctg atgcaggctt ttgagaaaaa tggatataca      1800
     cggaaagaag taaatagggt tctgcgacca aggaaaggta aacaaaaaga cagcaacaaa      1860
     acacaacgat ggaagaacac cgtttctctc cccttcatta aaacagttac ggatcagata      1920
     ggaaagattt tacgtaaaca cgatatcaga ccggttttta aaccaacaaa aaagataagt      1980
     caggcactcc gatctgtaaa ggacaaacgc cctcctctat catcaagtgg ggtgtacaaa      2040
     attccgtgtt cttgcggaaa agtgtatatt ggtactacaa aaaggagtgt gaatacaaga      2100
     ctgaaagaac acaaaagtct ttgccgactg ggtagaattg agaaatcagc tgtagctgaa      2160
     catgttttcc aatcaggaaa tcatgaagtg aagttttccg aaacggaaat tttatctaca      2220
     acgacgaact attatccacg actgtacaga gaagcaatcg aaatatacaa acatggggat      2280
     aattttaata gaaaggaaga agcaatgaaa cttaatgaca tatggactgt ggctcttcag      2340
     agtaggtagt tacgctttta tctttgacca tcgactatcg aaagttatgt tttatctttg      2400
     acaaggctta tctctgctgc gcacgtgaac acttgaccac gccccctttt ggacagtatt      2460
     tataccgctc tccgacgccc gactcgtcag tcggcaagac tcaccgctac cagtagcacc      2520
     tctgaggatg tccagcgcag ctctggacga aacgtcagga gcagatatgt ttcttcgacc      2580
     acgaccacat aacccggaag attcaacagc aattatttca gccggtcgtg aaagccttca      2640
     ctgca                                                                  2645
//
ID   Penelope-7_TrVa repbase;    DNA;    INV; 5122 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-7_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5122
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 632-632 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It includes terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           2496..4868
FT                 /product="Penelope-7_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MIILVILVLRLGSHLTFLSLSVAYLGLRILSPRYATD
FT                 KLKKVKCDPNLKTKMTKIIIKGELRKKYTERTVIYKQIMFLHLELLHDLHN
FT                 IEFDIIDDKARSKASTKCFKQREKHENKLNKLKDKCCPPKGIIFAPKLINL
FT                 SQTIFSNDETQLFNQGIKFVPRPPSKEKELTNLAIEVNSKILTSNTVKAIS
FT                 QKIEDNLKHNNKTTHISTNIGTIKSIKNKVKDQNLIITKADKSNAIVILDQ
FT                 DSYSNKVHDFIKSSNLKVLNKDPTKEINHNIRKLLSRTTLLENPKSLIEMN
FT                 PKPPSLQGYVKTHKANDQLDIKEVPIRPVVATYNAPTYKTEKFLTHLFKRK
FT                 ANWHPSKTVKNSLELVNKIKDQKIPDNAKLVSLDVDSMYTNINRGEAINLT
FT                 CDILKKHSSLSKSEIEEYRDLASFTAENNYFEFQNKTYQLINGVAMGAPFS
FT                 PLLADIYMDKFDNLINNNERWKKNIFSYNRYVDDILLIWIGTIRELNVFVN
FT                 QINSLDSNISFKLEVGHNQINFLDLTINIIGDKLSFSIYRKESSTDTIIPA
FT                 HSYHSWKHKMSAFHSMVNRLLNIPLNKKAYDKELRTVIQIATNNGYKKTTI
FT                 MQMIRRKLDKKTGALLFKGEHSANQKKERWVAIPYSEQVSEKASKIISHQD
FT                 NLKVTFSNQKNLGQILMNTRPKEKDVLNNSGIYKVECQCGKEYVGQTGRTV
FT                 NARVKEHFANARLEKLGSSSLSDHLINEKHLFENCHTKLLRCCKKGRKMNV
FT                 LEQLEINRRKTTGTLINSQLESEVVALYFPPSLCAEEHAR"
XX
SQ   Sequence 5122 BP; 1631 A; 926 C; 925 G; 1639 T; 1 other;
     tttagattgw tgattcactt tatcaggttg catatttata cagtagttaa ctcacttttt        60
     gtttgtcggt cctgattgtt gtattttttc ttatttttca aactatgatc atttcgaatc       120
     agtacagatt catcttcagg ttacaggtag gatcgcgacc gcgacttgtc gaaaataaaa       180
     aataaaagaa agttacgaaa ataaaatata agataaataa cacgaacaac acataataaa       240
     caaaggatga ccgatacgcg ttacgaaaac tggtcggcct gcgtactggt taccgcgcat       300
     gctcttccgc gcatagtgac ggtggaaaat acaaggctac cacctcactc tctaattgtg       360
     agttaatgag agttcctgtt gtttttctcc gattgatttc caattgctcc aacacgttca       420
     ttttgcggcc ttttttacaa catcttaaaa gtttggtatg acagttttca aacaggtgtt       480
     tttcgttaat taagtggtca ctgagggatg agcttccaag tttttcaagt cgagcattgg       540
     caaaatgttc tttgactctg gcattaactg ttctaccagt ttgaccaacg tactctttac       600
     cgcattgaca ctcaaccttg tagatcccac tgttatttaa aacgtctttt tctttgggtc       660
     tggtgttcat aagaatttgg cctaagtttt tttggttact aaatgtgact ttgaggttat       720
     cctggtggct aataattttg ctagcttttt ctgatacttg ttcagagtag gggattgcaa       780
     cccacctttc tttcttttgg ttggcactat gttcaccttt gaaaagtagc gcgcctgttc       840
     tcttgtccaa ctttcttcta atcatttgca tgattgtagt ctttttgtac ccgttattgg       900
     tggcgatctg tatgactgtg cgaagttctt tgtcatacgc ttttttattt aaaggaatat       960
     tcaaaagtct attcaccatg ctgtgaaaag cagacatttt atgtttccac gaatggtaag      1020
     agtgggctgg aatgatggta tcagtactac tctctttcct gtatatgctg aagctgagtt      1080
     tgtctcctat gatgtttata gttaaatcta gaaaattaat ctgattatga cctacttcga      1140
     gtttaaaact aatattactg tcaagactgt tgatttggtt gacaaagaca ttgagttctc      1200
     taatagtgcc aatccagata agtagaatat cgtcaacata tcgattatac gaaaatatat      1260
     tctttttcca cctttcattg ttgtttatta gattgtcaaa tttatccatg taaatatcgg      1320
     caagtagggg agagaaaggg gctcccatag caactccatt gattagttgg tatgttttat      1380
     tttgaaattc aaagtaatta ttttccgctg tgaaggaggc caaatctcgg tactcttcaa      1440
     tttcagattt tgagagacta gaatgttttt ttaaaatgtc gcaagtgaga ttaatagctt      1500
     caccacgatt tatgtttgtg tacatgctgt ccacatctag tgacactagc ttggcgttgt      1560
     ctgggatttt ttggtctttg attttgttga ccaattctag agagttttta actgtttttg      1620
     atggatgcca gtttgctttt cttttgaaaa ggtgggttaa aaacttttcg gttttgtacg      1680
     tgggtgcatt gtacgtggct actacgggcc ttatagggac ctctttaatg tcaagttgat      1740
     cattcgcctt atgggttttg acgtaaccct gtaaagaagg aggtttgggg ttcatttcaa      1800
     ttagactttt ggggttttcc aagagtgtcg tgcgacttag tagtttcctg atattatggt      1860
     ttatttcttt cgtagggtct ttatttagaa ctttcaggtt gctacttttt ataaagtcgt      1920
     gaactttgtt tgaatagcta tcttggtcta aaataacaat tgcattgctt ttatcagctt      1980
     tggtgataat gaggttttga tcttttacct tatttttgat tgacttaata gtccctatat      2040
     tagtggaaat gtgagttgtt ttgttgttgt gtttaaggtt gtcttcaatt ttttgggaaa      2100
     tggccttgac agtgttactg gtcaatattt tagaattaac ttcaatggct aagttcgtaa      2160
     gctctttttc cttggaaggt ggtcttggga caaatttaat cccttgattg aacaattggg      2220
     tttcatcatt tgagaatatg gtttgagata ggttaattaa cttaggggcg aatatgatcc      2280
     ctttgggagg gcaacattta tccttgagtt tgttaagttt gttttcatgt ttttcacgtt      2340
     gtttaaaaca cttggtacta gctttacttc tcgccttatc atcgatgatg tcaaattcaa      2400
     tgttatgtag atcgtggagt aattctaagt gaaggaacat aatttgtttg tatataacgg      2460
     tcctttcagt gtatttctta cgtagttcac ctttaatgat aattttggtc attttggttt      2520
     taaggttggg atcacattta acttttttga gcttatcagt ggcatatctt ggactgagga      2580
     tcctcagtcc aagatatgcc actgataagc tcaaaaaagt taaatgtgat cccaacctta      2640
     aaaccaaaat gaccaaaatt atcattaaag gtgaactacg caagaaatac actgaaagga      2700
     ccgttatata caaacaaatt atgttccttc acttagaatt actccacgat ctacataaca      2760
     ttgaatttga catcatcgat gataaggcga gaagtaaagc tagtaccaag tgttttaaac      2820
     aacgtgaaaa acatgaaaac aaacttaaca aactcaagga taaatgttgc cctcccaaag      2880
     ggatcatatt cgcccctaag ttaattaacc tatctcaaac catattctca aatgatgaaa      2940
     cccaattgtt caatcaaggg attaaatttg tcccaagacc accttccaag gaaaaagagc      3000
     ttacgaactt agccattgaa gttaattcta aaatattgac cagtaacact gtcaaggcca      3060
     tttcccaaaa aattgaagac aaccttaaac acaacaacaa aacaactcac atttccacta      3120
     atatagggac tattaagtca atcaaaaata aggtaaaaga tcaaaacctc attatcacca      3180
     aagctgataa aagcaatgca attgttattt tagaccaaga tagctattca aacaaagttc      3240
     acgactttat aaaaagtagc aacctgaaag ttctaaataa agaccctacg aaagaaataa      3300
     accataatat caggaaacta ctaagtcgca cgacactctt ggaaaacccc aaaagtctaa      3360
     ttgaaatgaa ccccaaacct ccttctttac agggttacgt caaaacccat aaggcgaatg      3420
     atcaacttga cattaaagag gtccctataa ggcccgtagt agccacgtac aatgcaccca      3480
     cgtacaaaac cgaaaagttt ttaacccacc ttttcaaaag aaaagcaaac tggcatccat      3540
     caaaaacagt taaaaactct ctagaattgg tcaacaaaat caaagaccaa aaaatcccag      3600
     acaacgccaa gctagtgtca ctagatgtgg acagcatgta cacaaacata aatcgtggtg      3660
     aagctattaa tctcacttgc gacattttaa aaaaacattc tagtctctca aaatctgaaa      3720
     ttgaagagta ccgagatttg gcctccttca cagcggaaaa taattacttt gaatttcaaa      3780
     ataaaacata ccaactaatc aatggagttg ctatgggagc ccctttctct cccctacttg      3840
     ccgatattta catggataaa tttgacaatc taataaacaa caatgaaagg tggaaaaaga      3900
     atatattttc gtataatcga tatgttgacg atattctact tatctggatt ggcactatta      3960
     gagaactcaa tgtctttgtc aaccaaatca acagtcttga cagtaatatt agttttaaac      4020
     tcgaagtagg tcataatcag attaattttc tagatttaac tataaacatc ataggagaca      4080
     aactcagctt cagcatatac aggaaagaga gtagtactga taccatcatt ccagcccact      4140
     cttaccattc gtggaaacat aaaatgtctg cttttcacag catggtgaat agacttttga      4200
     atattccttt aaataaaaaa gcgtatgaca aagaacttcg cacagtcata cagatcgcca      4260
     ccaataacgg gtacaaaaag actacaatca tgcaaatgat tagaagaaag ttggacaaga      4320
     aaacaggcgc gctacttttc aaaggtgaac atagtgccaa ccaaaagaaa gaaaggtggg      4380
     ttgcaatccc ctactctgaa caagtatcag aaaaagctag caaaattatt agccaccagg      4440
     ataacctcaa agtcacattt agtaaccaaa aaaacttagg ccaaattctt atgaacacca      4500
     gacccaaaga aaaagacgtt ttaaataaca gtgggatcta caaggttgag tgtcaatgcg      4560
     gtaaagagta cgttggtcaa actggtagaa cagttaatgc cagagtcaaa gaacattttg      4620
     ccaatgctcg acttgaaaaa cttggaagct catccctcag tgaccactta attaacgaaa      4680
     aacacctgtt tgaaaactgt cataccaaac ttttaagatg ttgtaaaaaa ggccgcaaaa      4740
     tgaacgtgtt ggagcaattg gaaatcaatc ggagaaaaac aacaggaact ctcattaact      4800
     cacaattaga gagtgaggtg gtagccttgt attttccacc gtcactatgc gcggaagagc      4860
     atgcgcggta accagtacgc aggccgacca gttttcgtaa cgcgtatcgg tcatcctttg      4920
     tttattatgt gttgttcgtt ttatttatct tatattttat tttcgtaact ttcttttatt      4980
     ttttattttc gacaagtcgc ggtcgcgatc ctacctgtaa cctgaagatg aatctgtact      5040
     gattcgaaat gatcatagtt tgaaaaataa gaaaaaatac aacaatcagg accgacaaac      5100
     aaaaagtgag ttaactactg ta                                               5122
//
ID   Penelope-80_LMi repbase;    DNA;    INV; 2672 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 20.01, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-80_LMi.
XX
NM   Penelope-80_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2672
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 247-247 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(66..1757,1639..2469)
FT                 /product="Penelope-80_LMi_1p"
FT                 /translation="MTTPAVKAFIYDQTPLRRGYVNIGSAVREHAKKSQQL
FT                 CSLTFLLRCRDTSTVPKFLKVKRTFRSAQAHRIYSRMESAMLRERIHQTRR
FT                 ALAETNSKLFQLHLLISNTMQCDDWNKIDNLTFRTMEASAEIAGNRQKRKF
FT                 DSLQKNVLVGTMEDNSRTVINLSDKVLTADEVLVLAKGGNFAVTPRKVPTE
FT                 DIVANIEAGIRQLSQQSADVIRMETARILRTCKPPTSNLSQAQRKALRDIN
FT                 ADENIIVLSADKGNATVVMKSEDYHEKIMDILDPSNYKQLRKDPTSKILKM
FT                 TNQLVKASSFSSDDKKHLCKTEAYSPRLYGLPKVHKQLVPLRPIVSAIGSP
FT                 THEVAGHLASLLQPYVGGTDSHIKNSCHFIDIIKELSVDPDDILVSFDVVS
FT                 LFTMIPVNEAITCIADIFPSDIVALFKHCLTTTYFQYKNVFYEQIDGVAMG
FT                 SPLSPAVANLFMENFEQRALQTARKRPAKWYRYVDDTFVIWTHGEEELDAF
FT                 LLHLNSINPRIQFTMEKETNGQLNFLDVTVIKREDGSLGHKVYRKDTHTDR
FT                 YLQKDSNHHPRQKKRRDRLSNERTDHWVIRSIGKTHTLIVIFKKILTTTHD
FT                 KKRGVIKTLVDRAHKICEPAHLDDEIEHLRVTFKKNGYSDREIDRALRPRR
FT                 TTRTDEERQQPKGKVFLPFINKVTDRIGKILSKYDVETVFRPTTKIKEFLR
FT                 SAKDKRHPLATPGVYKIPCSCGKVYIGTTKRSVNTRLGEHKRNCRLGHTDK
FT                 SAVAEHVYQEGDHEIKFNETSVIAKTSHYYARLYREAIEIFKHRNNFNKKE
FT                 EGLKLDKIWMSTLQQQHDNRLISIEEVGNSRDHSTADTT"
XX
SQ   Sequence 2672 BP; 848 A; 565 C; 616 G; 643 T; 0 other;
     gggcgaaacg tcaggggaaa gtttcatgta tggaccacgg catctcagcc cggaagcttt        60
     aagtaatgac gacacctgcc gtgaaagcct tcatttatga tcaaacgcct ctacggcgag       120
     gatatgtcaa catcggttcg gcggttcgag agcatgcgaa gaagtcacaa caactgtgtt       180
     ctctcacctt cttgttacgc tgcagggaca cgtcaactgt tccgaaattt ttgaaagtga       240
     agaggacgtt ccgctcggca caagctcatc gcatttacag ccgtatggaa tcagcaatgt       300
     tacgagagag gatacaccag acgcggcgag cactggcgga aaccaacagt aagctatttc       360
     aacttcatct tctgattagt aatactatgc agtgtgatga ctggaataag attgacaatc       420
     ttacattcag aactatggaa gcaagtgcag aaattgcagg gaatagacaa aagaggaagt       480
     ttgatagctt acagaagaac gtgttggtag gcacaatgga ggataattct cggacggtta       540
     ttaacctgtc agataaagtt ttgactgcag acgaagtttt ggtacttgca aagggtggaa       600
     attttgcagt gacgccccga aaggttccta cggaagatat tgtggcaaat attgaggcag       660
     gtatccgtca gctttcacag cagtccgctg acgttataag aatggaaaca gctagaatcc       720
     tacgtacatg taagccacct acaagtaatt tgtcacaggc acaaaggaag gcactgaggg       780
     acatcaacgc agatgaaaac atcatcgtac tatctgcaga caagggcaac gctaccgtcg       840
     taatgaagag tgaagattat catgaaaaga tcatggacat tttggatccc agcaattaca       900
     aacaacttcg gaaggatccg acatcgaaga ttttaaaaat gaccaatcaa ttggttaaag       960
     cgtcttcttt ctcttcagac gacaagaagc atctctgtaa aacagaagct tactcgccca      1020
     gactctatgg gttaccgaag gtgcataaac agctggttcc tttgaggcct atagtcagtg      1080
     caatagggtc tcccacccat gaggtagctg gacaccttgc ctcgttgctg caaccatatg      1140
     ttggcggaac tgatagccat attaagaatt catgtcactt tatcgatatc ataaaggaat      1200
     taagtgtgga ccctgatgac atcctggtca gttttgatgt ggtgtcgttg tttaccatga      1260
     tcccggtgaa cgaagctatc acatgcatag cggatatttt tcctagtgac attgtggcat      1320
     tattcaaaca ctgcctcaca acaacttatt ttcagtataa gaatgttttt tatgaacaga      1380
     ttgacggagt ggccatgggc agtcctctta gtccagctgt tgctaacttg ttcatggaga      1440
     actttgaaca acgggcgctg cagacagcca gaaaaagacc agccaaatgg tatcgttatg      1500
     ttgacgatac atttgttata tggacacacg gcgaagagga gctggatgcc ttcctgttac      1560
     atctgaacag catcaatcct agaattcaat tcactatgga aaaggaaacc aatggtcaac      1620
     tgaacttttt agatgtgacg gttatcaaac gagaggacgg atcattgggt cataaggtct      1680
     ataggaaaga cacacacact gatcgttatc ttcaaaaaga ttctaaccac cacccacgac      1740
     aaaaaaagag gcgtgattaa gacattagta gacagggccc acaaaatttg tgaaccagcg      1800
     cacttagacg atgagattga acatcttaga gtgacattta agaagaatgg ctattcagac      1860
     agggagatag atcgtgcact acgccctaga cggacaacca ggacggacga ggaacgacaa      1920
     caacccaagg ggaaagtttt tctaccattt atcaataagg tcactgatcg tattggaaaa      1980
     attttaagca agtacgatgt ggaaactgtt ttcagaccaa ccacgaaaat aaaagaattt      2040
     ttaagatctg caaaagataa gcgacatcct ctggccacac caggtgtcta taaaatcccc      2100
     tgcagttgtg gaaaagttta tataggtaca actaaaagaa gtgtcaacac tcgtctgggc      2160
     gaacacaaaa ggaactgccg cctcggacat actgataaat cggctgtagc ggaacacgtg      2220
     tatcaagaag gtgaccacga aataaaattt aacgagacgt ccgtcatagc aaagacgtcg      2280
     cattattatg cgcgtttgta cagagaggcc attgagattt ttaaacatcg aaataatttt      2340
     aacaaaaaag aggaaggtct caaacttgat aagatatgga tgtcaacact gcagcaacag      2400
     catgacaatc gattaatttc aatcgaggag gttggcaata gcagagacca cagcacagcc      2460
     gacaccacgt gactgacagc agcgccctct gttttgccta tatatacgac gcttactcgc      2520
     gctctcgttg cagtacgccg ctttacctcc gaggatgcct tccgcagacg agggcgaaac      2580
     gtcaggggaa agtttcatgt atggaccacg gcatctcagc ccggaagctt taagtaatga      2640
     cgacacctgc cgtgaaagcc ttcattctat ga                                    2672
//
ID   Penelope-81_LMi repbase;    DNA;    INV; 1012 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-81_LMi.
XX
NM   Penelope-81_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1012
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 133-133 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1012 BP; 387 A; 158 C; 131 G; 335 T; 1 other;
     tataaatgac gtttatacct tacactgctg ttataatgct ttatttatta ctatgagctc        60
     atttcggctt tatattgcca tcatcaggtt tctgtaatat aaacgagata atttataaca       120
     acagttacat aagctggcat atatactttt atggctaata catttaattt acttacattt       180
     aatgtcgttc ttatttctgt cctttttgtt taaggtgatt tgattttatt taaattatga       240
     ctggcttata tgcctgtaat ggattttttt attttctgcc tgattaaaaa gacagctatt       300
     ttcaaagtgt tttaacgaca ttatatgttt acatagttac agatcactgt agttatcagc       360
     taatttattt ccttgaagaa atcgaattat attcacatgc ctacataaat ccataaattt       420
     actcaatgag cagacagagc taaaacacaa aaaatacatt gaaaatttta ttcatatttt       480
     cagccacgaa aatggatagc caaaaacatg tcacagatat tcactccata gtaacaacat       540
     aaacatcaac caccaaagtt ataatatcaa ggaaaataaa ttagctgata actacagtga       600
     tctctgagta actatgtaaa catataatgt cgttaaaaca ctttgaaaat agctgtcctt       660
     tttaatcagg cagaaaatga aaaaatccat tacaggcata taagccagtc ataatttaaa       720
     taaaatcaak atcatcttaa acaaaaagga cagaaataag aacgacatta aatgtaagta       780
     aattaaatgt attagccata aaaaaattta tatatgccag cttatgtaac tgttgttata       840
     aattatctcg tttatattac agaaaacctg atgatggcaa tataaagccg aaatgagctc       900
     atagttaata aataaagcat tacaacagca gtgtgcaagg tataaacgtc atttataatt       960
     atgtcactca acgacatatt cctcactgcg ggccccaaag taaagaaaaa aa              1012
//
ID   Penelope-82_LMi repbase;    DNA;    INV; 4753 BP.
XX
AC   .
XX
DT   11-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-82_LMi.
XX
NM   Penelope-82_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4753
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 134-134 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           582..2375
FT                 /product="Penelope-82_LMi_1p"
FT                 /translation="MNDIIDRNVNSRSKNFSSDQKTLNEINKKLRNNDAIV
FT                 VKADKGNTAVIMYKGDYIAKTEEFFETNNITPVNSNLVDTYNKEIKDAINA
FT                 SDHIIQPKDKQKLILMNPRTPSLRAQVKIHKENWPIRPIVNSIDTASYHLC
FT                 KKLKIFLDQFYKYENTYTIKNRKEFIDALVDMKWPNNCILVSFDIVNLYTN
FT                 VPVVETIRIIEDNFKDQNVLNNEEIDEFVRLLHTALKYNIFTFNNKLYQQV
FT                 EGLAMGNCLAGSMADIFINTLENEFFRKFPDIHKNIMFYKRYVDDIFLIYQ
FT                 GTPADIPYIQGLLNSLHNNISFTYELQDDNGNINYLDLSIKIVDNEVSFDI
FT                 FRKPTTTDSIVHCSSCHPVSQKHSYFTSMINRIVQTPLSDQAVQRELQILE
FT                 YVANTNGYDPCLIKRLFKQRTDKSKPLTSLCNVEKPSYIKMPFFGNISYQL
FT                 ANLLKKYGITAAFCTKSKISQLLLHNEQQTGSSNALLKSGVYQINCENCPA
FT                 SYIGQTGRAFKTRFREHLPNKKGENPYRSTFAQHLIDEKHTAPSIDKLDIL
FT                 HFVNKGAKMNFLEELEIYKHSKSQDCNLLNEQTVLRNKVFLDCLATLLDDH
FT                 "
XX
SQ   Sequence 4753 BP; 1579 A; 1057 C; 621 G; 1496 T; 0 other;
     gctaaaactc ctaaaaattt cgcatcacat ctatttcaat aaaaattgca tcagcaacaa        60
     ggtaatacct acatatgttt ctgcctatat taaaatgcca aaaagtgatc atatcaacaa       120
     agtacaggtt gctgaaaaaa ttcatcatga cacaggataa aatttttcac agagaaatac       180
     aaacttaatt agtacttatt ttaaatttat aaaacgaaat actagttctt tacataacct       240
     caactagaca gtgttttttt ctaatattga agactggtta cagaaagaaa aatttctatt       300
     caaaaaaaca agaaaaaaaa ttaaaagttg cttatatcaa aacaaacaaa ctctagcaat       360
     catgttaata tggttgccca gctttgaatt ttatagtaga actgtcaata aaaaaagctg       420
     acattgtttt taatgacaaa atcagatttg ctagaaaaag agttaaaata aaatatcaaa       480
     cagatcatca aaacaacatt gtagaactga tttctagtgt taaactaggg cttgactcac       540
     ttaaaattga tagaaaggaa cagacaaaag tagcatgtaa aatgaatgac attatagata       600
     gaaatgtaaa ctctagaagt aagaacttct cctctgacca aaagactctt aatgaaatta       660
     ataagaaact tagaaacaat gatgcaatag ttgttaaagc tgataaagga aatacagctg       720
     ttatcatgta caagggagat tacatagcaa aaactgaaga attttttgaa actaataata       780
     ttacacctgt aaacagtaac ctggtagata cttataacaa agaaattaaa gatgcaatca       840
     atgctagtga tcacattatc cagcctaaag ataaacaaaa gctcatcctt atgaatccta       900
     gaaccccctc acttagggca caagttaaga tacataaaga aaattggcct attaggccaa       960
     tagtgaactc aattgacaca gcatcctacc atctttgtaa aaaactaaaa atattcctag      1020
     atcagtttta caaatatgaa aatacttaca ccatcaaaaa ccgcaaagaa tttattgatg      1080
     ctcttgttga catgaaatgg cccaataact gtattttggt atcatttgat attgtaaatt      1140
     tgtacacgaa tgtacctgtt gtagaaacta ttcgtatcat cgaagataac ttcaaagatc      1200
     aaaatgtcct caataatgaa gaaatagatg aatttgttag actattacac actgcactta      1260
     agtataatat tttcacattt aacaataagc tgtaccaaca ggtagaggga ttagccatgg      1320
     gcaactgcct agcaggtagc atggctgaca tttttattaa cactttagaa aatgaatttt      1380
     tcagaaagtt tcccgacatc cataagaata ttatgttcta caaacgatac gtggatgaca      1440
     tcttcctcat atatcaaggg acaccagcag acattcctta cattcagggc ctcttaaaca      1500
     gtttacataa taacatcagt ttcacctatg aattacaaga tgacaatggt aacattaatt      1560
     acctagattt gtctatcaaa atcgtagaca atgaagtgtc ctttgatata tttaggaaac      1620
     ctactaccac cgatagtatt gttcactgtt cctcttgtca cccagttagc cagaaacata      1680
     gttacttcac atctatgatt aacagaattg ttcaaactcc actgtctgat caagcagttc      1740
     agagagagtt gcaaatctta gagtatgtgg caaataccaa tggctatgac ccttgtttaa      1800
     taaagagact atttaaacag agaactgaca agtcaaaacc tttgacttca ctatgcaatg      1860
     tagagaaacc tagttatatt aagatgcctt tctttggcaa catctcttac caacttgcaa      1920
     atttgcttaa gaaatatggc atcacagcag ctttctgtac taagagtaaa attagccaac      1980
     tactcctaca caatgagcaa caaacaggta gcagtaatgc actacttaaa tctggggtct      2040
     accaaataaa ttgtgaaaac tgtccagcaa gttatattgg ccagactggc agagcattta      2100
     aaactagatt tagggaacac ctccctaaca aaaaaggaga aaatccctat aggtccactt      2160
     ttgcccaaca cctaatagat gaaaaacata cagctccaag tattgataag ttagacatct      2220
     tacactttgt aaataaagga gctaaaatga actttcttga agagctagaa atatataagc      2280
     attctaaatc acaagactgt aatctattaa atgaacaaac tgtgttaaga aacaaggttt      2340
     tccttgattg tttagccaca ctcttggatg atcattgaaa atgtactatg tgttcataca      2400
     gtataatagt tgcttcttaa ttgtaattgt ctctgtaaaa cactaagtgc agatattatt      2460
     gtttgaactt attcaccttt gcccaaccct tcaattgctc tactttatat aaaagtcaca      2520
     aattaaactc cattccttca ctatgttttc tccagtgtgc tgattactca cactggcttc      2580
     acttatctgt tgtagttgcc tccaacaacc acctcccctc cctactgttt tgagttttaa      2640
     cccatcctag tacctttcat agtatacctg ctccataggc tttcaagatt gataaagatg      2700
     taataaaaca attaaaccaa aagttaattt caacgaacca caagtaagat atgctgtacc      2760
     catacagttc ctcattgact gattagctct tcttcttagt cactgtagta ttcattatgt      2820
     tgctttacat cagccccttc acatattaca catgttttac agccataacc tttctgacta      2880
     acccacccta atactgcaca taatgcataa ctagctctaa cagacactga actagtccct      2940
     tatgtttctg cctatcttaa gattgaaagt ggtagccacc ccacattaca gtggtagacc      3000
     atatataact ttatcaacag tcacagagca tacacttgtg gtgcattgca tatggatttg      3060
     tctttgcaca atttctgcta cactcctccc ccccccattc catacaatta tcagctattc      3120
     cccttcttta taaaaccccc aactaataac cataaacttt gctcacaccc acactcatac      3180
     cttacatacc ttatctccac agttacacca tcatattcac caattacaca cacacacaca      3240
     cacacacaca cacacaacac tctccacctg ctacctgctg tttacttata aacttaacat      3300
     attccccctc cccccacata ctacgttcag tcactctcac aatattcttc ttcctctgtg      3360
     ctacaactac attaaaatta tctcagattc caatttttgc agtcctactc ctatttcttt      3420
     atgtaaccct actctgttct actttactac acaatgtagt tatgtagtat accaccactt      3480
     ccccccccct ccccccttac atctcactcc cacccctggc cttacatgct aatgtctatg      3540
     cgtggttcct caaactttcc ttggttgctt cctctttgtg caggttcctt acctctattc      3600
     cccccccccc taccccatca ccacctcact cagtcatcaa ctactttcta ccactctaac      3660
     cccctcccac cccataaata tttggataca tatgccagtt gtaatttttg gtaactattc      3720
     cctcctctcc ccctcccccc acctcatatt aaagataggt tattttatgc ctccactttg      3780
     ttaaactgca ctatgcaata gtcactacca ttatgatagt gacttgttta tttttagaaa      3840
     accagccacc acttactctt attgtgtctt aaagcaccat gatctgctct acatgattgt      3900
     cctctttggt atatttctag caagttgact gtttaactct cttcagttgt ctgactagat      3960
     gtaccaattg taacactagg ttaatattac tgtaaccatt cacatttctt tgcacattag      4020
     ttcacgcatc ttaaaactta taacccacat ccttaactta tttgttgtat gagaatcact      4080
     tcatcaatct atccccatta atatttgaag ccatagacac aatgacaaat tctttatatt      4140
     gacagatgcc ctgacagtga cattctaagc atcctactac tgtgtcagct gctagttccg      4200
     aaatattccg cctatggcgc cacttatcat tgtacttctt aactactgaa tattaatctg      4260
     ttaagcgact gatttatcag tcacctgctc ctctctttat gcttttcttt tcaactacat      4320
     cgagtattac tgttttccca tagccttttt tccttattta tttttactct ttcactatga      4380
     ggctcatcca tagatacttt gttagcagct gattgttatt cattgcataa tctctgcact      4440
     tagcgttgat tctcctacta gcatgtacat tcattaagca acagtactaa aatgtaagtg      4500
     ttaattttat cccattatat gaacatatct ttattacaat ctatttggtt cgaaactgct      4560
     tcaaatttct gtaaccgact tttgtacgtt ctatagcctt tactgtatac caatgcactt      4620
     gtttgtctgt atagagacca gaagaagggc actcaagcgc ccgaaaccgg tcgttaaagt      4680
     taaaaataac cacaagcaac tggttgctgc atttcattaa tttataacct gaacagttgc      4740
     tgaaatggat aaa                                                         4753
//
ID   Penelope-83_LMi repbase;    DNA;    INV; 3158 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-83_LMi.
XX
NM   Penelope-83_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3158
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 248-248 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(315..887,900..2465)
FT                 /product="Penelope-83_LMi_1p"
FT                 /translation="MDKQIQSNTTNRQRHTHQFYPRLVNLTDTKLTDEETQ
FT                 LLQKGLKHNVNTKVNEYYVENLIIETENILSQEQKKETSTMNIGLTRELIG
FT                 KEIKNIIDTRHQHNKTSQLTTETKTLKTLREKLHRENIIITKADKGSSVVL
FT                 MDKEEYNNKTEEFISKNKITKLKSDPTNRFHTKMKNTLKTVEYTLDDKQKL
FT                 VTNAPKLGANQTSQNKYPMRAIVNYRRAPTYTLARHMLNVLTQQYKAHNDR
FT                 TIKNTVELINNIKDLYIPDTAMLISFDVENMYSTIPVKETIKIIKQDLETF
FT                 NQLSQEHITEISTLLHLITEQNYFEFNKEFYLQAEGLPMGSPISGKLANIF
FT                 MNKIEKRIFEEIVPGKYSIIYWWRYMDDILCLIDEPENKIDQLHTEINTIH
FT                 KNIKFTLEKEEAGQINFLDISITKKNNSHSFSIYRKSTASDIILHQSSNHP
FT                 QAQKESALRYMLHRLNTVPLDKHNYNKELDIIIQIAKSNGYQETLITKLNK
FT                 RIQNKIKKQNTQNQGLITLTTTPQNNNNTNERHNTETQQTNWYTLTYGNKL
FT                 THRIGNILKKQGIKIAYQSHNSLQKCLIKTESTDIYQKSGIYQLKCNSCDA
FT                 LYLGQTSRTFETRYKEHKRSWKYGNSHSTFAEHLRQENHYPTTIETDMQIV
FT                 RFSNKKHLLTLQENFQIQKALIEKKHILNDQVNISNQTLFKLIKHIVDKDK
FT                 PPPPSKPPHNTTT"
XX
SQ   Sequence 3158 BP; 1427 A; 698 C; 417 G; 616 T; 0 other;
     agcacatcat tttaataaat attgtaattc aacagcctag tacctaaata tatcaatgta        60
     acgatcagaa acagttcaca tgccgcagag aaagcaaaat cattagctca aaaatgctgg       120
     cttgcaagcg aaattagaac actgtatacg aaaaaacgtt ctctgaaaca aaaattgtat       180
     gaagcacact tgcacttagc tgacactgta aatagcagta ttgttctctg ttatattctt       240
     gaaaagtcga agaatacacc agtaacaaaa ttgaagagat aaagcaagta cacaataaga       300
     aactaaaggc actaatggac aaacagatac agtcaaacac cacaaacaga cagagacata       360
     cacatcaatt ctatccccgt cttgtaaacc tcacagacac caagcttact gatgaagaaa       420
     cacaactact acaaaaaggt ctaaaacaca atgtaaacac aaaagtaaac gaatattatg       480
     tagaaaattt gataatagaa actgaaaata tactgtctca agaacagaaa aaggaaacaa       540
     gcaccatgaa cataggccta acaagagaat taataggtaa agaaattaaa aacatcattg       600
     atacaagaca ccaacacaat aaaacaagtc aattaaccac agaaactaaa accctgaaaa       660
     cccttagaga aaaactacac agagaaaaca taatcataac taaagcagac aagggaagct       720
     cagtggtcct tatggacaag gaagaataca acaacaagac agaagaattc atttcaaaaa       780
     ataaaataac aaaactaaag tcagacccaa caaacagatt ccatacaaaa atgaaaaaca       840
     cactaaaaac tgtagaatac acactggatg acaaacaaaa gctcgtatga cacgtatgaa       900
     ctaatgcacc aaaactcgga gccaaccaaa cttcacaaaa taaataccca atgagagcaa       960
     ttgtaaatta cagaagagca cctacataca cccttgccag acatatgcta aatgtactca      1020
     cacaacaata taaagcacat aatgacagaa caatcaaaaa cacagtggaa ctaataaaca      1080
     acataaaaga cttatatatc cctgacacag ctatgttgat atcatttgat gttgaaaaca      1140
     tgtactccac aatcccagtc aaagaaacaa tcaaaataat aaaacaagac ctagagacct      1200
     tcaatcagtt atcacaagaa cacataacag agataagtac actcctacac ctcatcacag      1260
     aacaaaatta ttttgaattc aataaagagt tctacctaca agcagaaggg ctaccaatgg      1320
     gatctccaat ttcagggaag ttagcaaaca ttttcatgaa caaaatagaa aaaagaatat      1380
     ttgaagaaat agtaccaggc aaatacagta taatatactg gtggagatac atggatgata      1440
     tcctctgctt gatagatgaa ccagaaaata aaatagacca actacacaca gagataaaca      1500
     caatacacaa gaacataaag ttcactctag agaaggaaga agcaggccaa atcaatttcc      1560
     tggacatatc catcacaaag aaaaataact cacactcatt cagcatctac agaaaaagta      1620
     ctgcttcaga cataatatta caccagtctt ctaaccaccc acaggcccaa aaggaatcag      1680
     ctctcagata catgttacac agattaaaca cagtaccact agacaaacac aattacaaca      1740
     aggagctgga cataataatt cagatagcaa agagtaatgg ataccaagaa accctcatta      1800
     caaaactgaa taaaagaatc caaaacaaaa taaagaaaca aaacacccaa aaccaagggc      1860
     tcataacact cacaactacc ccccaaaaca acaacaacac aaatgaaaga cataacacag      1920
     aaactcaaca aacaaactgg tacacactta cttacggaaa taaactgaca cacagaattg      1980
     gaaacatcct caagaaacaa ggtataaaaa tagcatatca aagccataac tcattacaga      2040
     aatgcctaat aaaaacagaa agcactgaca tctaccaaaa atctggtatt taccagctca      2100
     aatgtaacag ttgtgatgct ctatacttag gacagaccag caggacattt gaaacacgat      2160
     ataaagaaca caaacgatca tggaaatatg gcaacagcca ttcaacattt gcagaacacc      2220
     ttaggcaaga aaaccactat cccaccacca tagaaaccga catgcaaata gtcagattta      2280
     gcaataagaa acacctcctg accctccaag agaatttcca aattcaaaaa gcattaatag      2340
     aaaagaaaca catattaaat gaccaagtaa acatcagcaa ccaaacatta tttaaactaa      2400
     taaaacacat agtagacaaa gacaaacctc ccccaccctc aaaaccacca cataatacga      2460
     ccacataaaa caacaacaaa tccctaccca cacattaaca catgcagaaa atcggaatct      2520
     ctctctctct ctctctctct ctctctctcc acacacacac acacacacac acacacacac      2580
     acacacacac acacacagaa agtcgctagt tgaactaaaa tcatatttat aaacacacaa      2640
     tacagtcaga acatcacaca caaagttgct agcagacgcc tgttttgaca gaaacgaaac      2700
     aaaaacacac ctcacagcac gaaccaaaga actcgaaagc aaagaacaca cacacagaca      2760
     ataaacaaac aaaacaaacg acatacagag cctgccaggc cacagaaatg gctatttttc      2820
     aaaaactttc gtaagaagtg ttactgtaaa aaagtgtaaa tagtgtaaat ataagcagtg      2880
     acagcaagtg gcaatgtgct acaaaccaca catgaagacg aaaacataaa aaattcgtga      2940
     gtaatattag tagtccaatt tattcagaat caaaacaatc caattgcatg agaactgtta      3000
     ccgatcgaat ttagtaaaaa ctcaaacaaa taatgtaata caaaccattt cttgtacagc      3060
     tgaccactga agatgcttta gaataaagcg aaacgcgtct ggtctaaagt agactaattt      3120
     acagttgcat aagacggtcc cataacctat acaaattg                              3158
//
ID   Penelope-84_LMi repbase;    DNA;    INV; 1386 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-84_LMi.
XX
NM   Penelope-84_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1386
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 135-135 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1386 BP; 440 A; 240 C; 294 G; 411 T; 1 other;
     attccgaatt gccgccatcg tacaactgtt tgtcaatttk tatcataaaa tctcgcacca        60
     gttgtcaata tgataacact ttagtcgtca cgacatgttt cgagaccaca ttgtcccatt       120
     ttcaagtgct aaaaacaagg aatcacatat aaatacgatg ttttaaaaaa ccggaaacaa       180
     cgaagacatt cacaggtgct gtaattaata aacgtcatgc caccagtaaa caaactagcg       240
     ttttaagtgc gctccacagg ttaacgccat tccccttctg aaaacaagaa agaggaattg       300
     agtacgctta ggcaaatagc ggtgaaaatg gctatgacgc agggttaata gatagattga       360
     acagggcaat agaacataga aacccccaaa ctgagagaac cgcgcagaaa tatagggtca       420
     tgccattctg gggaactatc tcatataaac ttgcgcgatt atttaataag aaaggtatac       480
     aaatcacttt tagaacagat aacaaactgg cgcagagggt gatacataag actgacacag       540
     gggagaattg gatggggaaa gcgggagtgt atgaaattaa atgtcaagat tgcgaaatga       600
     agtatgttgg acaaacgggt agaaacttta aagtaagatt taaagagcat agcaataggg       660
     agaatggtac atcggcggtg gcgaagcacc taaaggcaga aaaacattca ttgggcaaca       720
     tcagtgacag tatgagagta gttcattttg aggacaaagg acgactgtta tcatatctgg       780
     aggaaattga gatattttgc gctcttaagg agggttgtga caccgtgctg aatgaaaaga       840
     cagaattgtc taaagagcat ttttggtccc attttagtaa tgtcctcctt tcgaaataat       900
     gacttatccg tttggtttac cattatatag gaacgtgttt ttctaattta cactgtttat       960
     ttaaacctcg ccttacctag acactatctt tgatcccttc acaacatcat cgttgatagc      1020
     cgtgactgtt ctctgttcct tatatctttg acatgtaaga gcagttgtca tgctgcttac      1080
     gaccgaacaa cattgtggtt acgttccctc actagtgtat tctaaattaa tttttatgat      1140
     ggacatgcac gaaacttacg tacgttttag agtttgacgt tgctcattgg cagaatggtt      1200
     atttaattta taaggtgggt gtctttggtg tattttcagt tcgttgtttc cggttttttt      1260
     aaaacatcgt atttatatgt gattccttgt ttttagcact tgaaaatggg acaatgtggt      1320
     ctcgaaacat gtcgtgacga ctaaagtgtt atcatattga caactggtgc gagattttat      1380
     gataca                                                                 1386
//
ID   Penelope-85_LMi repbase;    DNA;    INV; 3324 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-85_LMi.
XX
NM   Penelope-85_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3324
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 136-136 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 3324 BP; 1477 A; 589 C; 381 G; 871 T; 6 other;
     aagtaataaa tttaaaactt ataatgtgct ccctatttgt cgaaaaaaat atttttacaa        60
     aatttattta actattacag accacttgac aatgccaaat acggcgaaac agctgtagtg       120
     gacaattaaa taaagctaat aagcagcagt aaaggcgatt atatttatta aaatgtcata       180
     ttacgacata ctcactgctg caggcccatt tatgaaaaaa gttttgacga cacagtcaag       240
     agaaataacg ggcatatttc tgcgcctttt acgtttaaaa ttaaaaatca caaaggtcat       300
     tgaagccatc aagtataaca aaaagtgctt aaaatgtgga gtaattcctt catatataaa       360
     catcaaaatc atagctaaaa ccactctaaa tcaacaaatc aagaattatg gtgcaagact       420
     atggatcaaa gaagaactam acttcaagta tcaccgcaag gaagtactaa atcaagaaat       480
     gwatgtaacm catttagaat tatgtaatag tgtctctcct ttggtttttg atactataca       540
     taaatttata attatatata atattcatat cagcaaacag attcgacata tacacaacaa       600
     aaattcgcaa aattaataca aacacaaaaa caaccaccwt tattcgaaaa accacacaac       660
     acattacagt tttatccccg aactaaaaac ctaacagaaa tagaattttc agataacgaa       720
     ataaatttac tcaataaagg aatcaaatat aacattgaac caaaactaaa taaaaattca       780
     ataaaacatg caatcacaac tggtaaaatt gcaatagata atgctaatct accaattaga       840
     caacaaaacg aactcactat aaatatggcc aaaattattg aaaaagaaat agccaaaaca       900
     caatctcaaa aaaataggaa tgagataaaa acattaacta atattaacca aaaattattg       960
     tcaaataacg caatagcact aaaatcagac aaggtaatag tattgtcata atgaaaaaac      1020
     tgagtacata caaaaagtta tggatttctt cgtgataata atatactgaa ataccgagaa      1080
     atcctactaa caaatatgtg ctcagataaa aaaagtgtat aaaaaattct gatataataa      1140
     ccagtatgaa aagaaatctc taattttatg aactctaaaa caccaacact tcgagcacaa      1200
     cccaaagtac ataaacaatc gatcccttta agacctattg tcaactgtat agatagccca      1260
     gcatatctta taagcaaaaa aagttaacac actacttacc aaactataca cgtacaagaa      1320
     aagatacaca atcaaaaatt cacgtattct tgcaaacaca ttaaaaatat cactatccca      1380
     ctaaacaata aatttgtatc ttttgatata tcaaatctgt atacaaacat cccagtaaga      1440
     gagaccatac aaattataga agcaaaccta cttatataca aaaaagcatc agtaacagaa      1500
     acacaagaac tgatacatat gctaacacta atcttatccc aaaattattt tcaatttaat      1560
     ggaaaaatat acaaccaagc agatggtgta gcgatgggaa gttcaatagc tggaatcttg      1620
     gcagatatat ttttaaacca attagaaaca aaatttttag cactaactct catttaacaa      1680
     ataaaataat atattacttc cgttatgttg atgatacttg atctgacaca aggaacagat      1740
     aatgaaatta atgaaataca ctatttactt aacaaattac atccaaaaat taaatttacg      1800
     aaagaattag aaacgaatgg ctcaatcaat tttctcgatt taaaaactag caataaacac      1860
     aattttcatt cctttgaaat ttaccgaaaa ccaacaacaa cagacaacat aataaatgcc      1920
     aattcatgcc accctacatc gcaaaaatat gcctactttc attcaatgat aaatagaatt      1980
     aacaacctgc ccctagacaa agaaagtatt gataaagaaa tccaaatttt aaaatatata      2040
     gcttatacaa acgattacaa tcctgatata gtccacaaaa tttatgataa atgcaaagaa      2100
     cctaaaaata aaatttctat acacacaaaa ataaaacttg taaaggaaga accagaacat      2160
     aaaaaaatca aatatattcc tacaaccttc ataggtaata tatcaaacaa aatcaacgca      2220
     ctattcaaac aaacacgaat aaaatttgca tttcgtacaa acaacaacct acaaacaaaa      2280
     ctccataaag ccatatcaac cacaaccaac tttaactgtt caggaattta taaaatcact      2340
     tgcgaaaatt gtaacaaatt ttatataggt cagacgggac gaagttttag aacgaggttc      2400
     agcgaacata caagaatgac agaagcaaat ccatctactt tctaccagca tttgaaaatt      2460
     gaaaaccaca ccaccacwaa catcgagaga gctttaaaaa tattacacaa aatttcaaaa      2520
     ggcactgaaa tgcacattct cgaagaatta gaaatataca tacacatgga agcttcacct      2580
     aacgaaattc tcaatgaaca cacagatttt aaacacaaaa tttatttaca aaattttatc      2640
     gatctaattg ggcttgacaa cggataaatt cagagatgta atgttccaca gtcaaggata      2700
     acgcaaaatt tcgattaaca tacaatatct cacacaccag agaaaagcat tttcatactc      2760
     aaagatatta caaaattcca aatggcaagc aatacctcag aaaccaaaga gacacactat      2820
     ttcataatcg gagacactac aaaatcaaam gtataaaaca tttgtaaata cttgacattc      2880
     aaagatatca caaaattcga aattaatcat ctcagagaag ctagatcttt accaaagata      2940
     taatgcaata gaacatcttt gtaaacacat agcatcaaaa tagctgtcaa acaagaaagt      3000
     cattacttta aaaattatta aaaaaacgac tttctaagaa agtacctatt aaaatcatat      3060
     agaggtacag atgctgtgtg tatattggca acaaatagac agtaagtaat aaatttaaaa      3120
     ctgtataata tgctccctat ttgtatcgaa aaaaatattt tcacaaaatt tatttaacta      3180
     ttgcagacca cttgacaatg ccaaatacgg cgaaacagct gtagtggaca attaaataaa      3240
     gctaataagc agcagtaaag gtgattatat ttattaaaaa tgtcatatta cgatatactc      3300
     actgctgcag gcccatttat gaaa                                             3324
//
ID   Penelope-86_LMi repbase;    DNA;    INV; 2982 BP.
XX
AC   .
XX
DT   16-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-86_LMi.
XX
NM   Penelope-86_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2982
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 249-249 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(33..314,287..448,385..1545,1549..2067)
FT                 /product="Penelope-86_LMi_1p"
FT                 /translation="MYVLTNTAIPSHLTSKEGDALITKKEMNFPSIPLQME
FT                 HKFFDRVINTTDISFNNNELKLLNKGLKHNIAPTLNNDNIKELIASTKMAC
FT                 TIIRRINGMHHHQENIDQNEMYHTMNKDTASINKRLSTNNALVARQTKETH
FT                 LLSYMNQIMQCPGSPSDKGNTSVVLYESDYVNKTHEFFKNNNIKEIELDPT
FT                 PKFQEKIKKLLKNCNFLLTQAEIKQCTVMNPTAPKLRSQPKVHKPNCPIRP
FT                 VVNSINSPSYKITRKLHDIIHKAYVFENNFSIKNSYDLINSIKDISIPATA
FT                 KFASLDIVNLYTNIPVKETITIIRNNLLKHGTMSRAEIIELIDILELILSH
FT                 NYFLFNKKFYIQEDGLAMGNSLAGLLANIYINHLENKFFKSQSHLKDKLLY
FT                 YKRYVDDSIILFNGTTTEIDNXAAELNKLHPKIQFTVEHETPDGINYLDLK
FT                 ISNKNQKHNFQIFRKPTATNVSIHNSSCHPDQHKKAFFRSMINRMHKIPMD
FT                 TNERQKETNIIKSVAISNGYSPAVIDKLIQSTKKKTNNFTDTHNQKTIFIS
FT                 LPFLGKVSYQIANLFKKHEIKISFSTNNKIQNKIIHNTKTNIDKFQKSGIY
FT                 KLTCNSCPSFYIGQTGRSFTTRFKEHMDALRLNNLNKSSFAAHLAQQGHSA
FT                 DNIQKNLQILHFANKGMKLDLLEEIEILINTNTASNNLLNDQTELKNKMFL
FT                 QNFENLLI"
XX
SQ   Sequence 2982 BP; 1199 A; 655 C; 379 G; 747 T; 2 other;
     ttatgtattc atgctctttc tggataatgt aaatgtatgt attaacaaac actgcaatac        60
     catctcactt gacatcaaaa gaaggtgatg ccctgatcac taaaaaagaa atgaacttcc       120
     ccagtatccc tttgcaaatg gaacataagt tttttgacag agtgataaat accacagaca       180
     tctctttcaa caacaatgaa ctaaaattac taaacaaagg ccttaagcac aacattgccc       240
     ccacactcaa taatgacaat atcaaagagc taatagcgag tactaaaatg gcatgcacca       300
     tcatcaggag aatatagacc agaatgaaat gtaccatacc atgaataagg acactgcaag       360
     cataaacaaa aggctttcaa ctaacaatgc cctggtagcc cgtcagacaa aggaaacaca       420
     tctgttgtcc tatatgaatc agattatgta aacaaaaccc atgaattctt caaaaataac       480
     aacataaaag aaatagaact tgatcccact cccaaattcc aagaaaaaat taaaaagctg       540
     cttaaaaatt gcaacttcct tttgacacaa gcagaaataa agcaatgtac agtgatgaac       600
     ccaacagcac ctaaattgag atcacaacct aaggtccaca aacctaactg tccgatacgc       660
     cctgtcgtaa actcaattaa tagcccaagc tataaaatca ccagaaagct ccatgatatt       720
     atccacaaag catatgtgtt tgaaaataac ttctctatca aaaacagtta tgaccttatc       780
     aatagcataa aagacatctc cataccagcc acagctaaat ttgcatccct tgacatagtc       840
     aacctataca caaacatccc tgtcaaagaa acaatcacca taataagaaa taatctcctc       900
     aaacatggta caatgagtag agctgaaatc atagaactca tagatatcct ggaacttata       960
     ttatcacaca actattttct gttcaacaaa aagttttaca ttcaagaaga tggactagca      1020
     atgggcaata gtcttgcagg actgctagca aatatatata tcaaccacct tgaaaacaag      1080
     ttttttaaat cccagtctca tctgaaagat aagctgctct attacaaacg ctatgttgat      1140
     gactctatca tcctgttcaa tggcacaaca acagaaatag acaacmtagc tgctgaactt      1200
     aataaattgc accccaaaat acagttcaca gttgaacatg aaacaccaga tggaatcaac      1260
     tatcttgatc taaaaatctc taacaaaaac cagaaacaca acttccaaat tttcagaaaa      1320
     ccaacagcaa caaatgtctc cattcataat tcttcttgtc atccagacca acacaaaaaa      1380
     gcatttttca gatcaatgat aaaccgcatg cacaaaattc caatggacac aaatgaaaga      1440
     caaaaggaaa caaacatcat aaaatcagtt gccatcagca atggatacag tcctgctgtc      1500
     attgataaat taattcagtc aacaaaaaaa aaaaccaata atttctgaac agacacacac      1560
     aaccaaaaaa ccatctttat aagcctacct ttcctcggaa aggtttcata ccaaattgca      1620
     aacctcttca agaaacatga gataaaaatt agtttctcca caaacaacaa aatacaaaat      1680
     aaaatcatcc acaacacaaa aaccaacata gataaatttc aaaaatcagg tatctataaa      1740
     ctaacttgca actcatgccc aagcttctat attggtcaaa ctggaagaag cttcacaaca      1800
     agatttaaag aacatatgga cgcactccgc cttaataact taaacaaatc cagctttgcc      1860
     gcacaccttg cccaacaagg tcattctgca gataacattc aaaagaacct acaaatactc      1920
     cattttgcca ataagggtat gaaacttgac ctccttgaag aaattgaaat cctcatcaat      1980
     acaaatacag catccaacaa cctgctcaat gatcagactg aactaaaaaa caaaatgttc      2040
     ctccaaaact ttgagaactt gctaatataa agaaactaat tcacaaaaag cctctccccc      2100
     cttcccaccc ctccaataac cccctccact catgacaact ctttcatatg ctttctgata      2160
     aggtaaaaac actactaaag aacaaataca taattgcttt acccacatct aaatacctac      2220
     cccttcaatt ctacaataat agagcaacca gattcgtact gtctttaaac acaataaaca      2280
     gaacctagtc tatattaata ttctagaaca ccactagtgt atgaataaac atagcaataa      2340
     tacgaatttt attcttgtac ttttaactga ttgtatacat acatattaag taaaaaaact      2400
     atgcaaacaa tgcagacagt atttattatt cacttttgca gtttaatatt gacaaaatta      2460
     tttgctaaat gatcgactgt atcatactca aaacaaactt acctgtacaa agagtgttat      2520
     atcttcgaat taagacgttt gtaaataaca gcagctgtaa aagcacatgt tggacgctgg      2580
     taaagtgttg tttatagtgc agtgtagaac ccaacagaaa aaggtgatgt gttactgtga      2640
     cttaaacaaa aggagacgca agaaatggaa attaaccaca aaaatccggc catacagtcg      2700
     cagtaagtaa atcagcaaat ttcacgtaat cttacaaata caaaacacga cctaaacacg      2760
     tgcaattcga gttttaaaat atatttcckt cttcccacca cagagccagc atccaacatg      2820
     acgcttaaaa tgatattgta acatgatcca tctgaagatg aacctgaaaa ggtttgaaaa      2880
     ccagttcatg gaataaacat catttcaaga aaaagtgact ggagcagttt tcttaaatca      2940
     tattgaaaat aagtcacggg ttctgaaaca tccgtaatgg at                         2982
//
ID   Penelope-87_LMi repbase;    DNA;    INV; 1750 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-87_LMi.
XX
NM   Penelope-87_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1750
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 137-137 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1750 BP; 682 A; 306 C; 236 G; 525 T; 1 other;
     atagggcctg cagcgttaaa aaggtcagca agtgacatgt tattataatt aaaccaaatc        60
     gctgctattg agtatttttt attttcacga cagatccgtt tcggcttata atgccattgt       120
     caagtgacct gcgttttaaa tgggtaacat taagattaaa acaatggtat gtcgtattat       180
     aatattacag taatgatctt aacaactact tacgtatgtg tctagatgtt cagacataca       240
     taagacatct aaagcatatt tatattaact gtcaaaaaga ttttgataat attgcgtatt       300
     ttgacagtta cagctaagat gtcatatgtt tacaaaagat gtacaacaga tatttatgtt       360
     gttatgcttt gatatatctt tgacgtattt gacatctgtg ttaataaatt atagattaca       420
     aaatctacca ttacaagcga caaaatccaa aaagaattag acacactgaa tacatagcat       480
     ataaaaacaa ttttgaccct aacattgtca ccaaattgta caacaaatac acggcaccca       540
     aacccaacac tatacacagt gaaatttgtc ttaccaaaga aacaacaact aaaaagaaaa       600
     gaaaatacat accagctgtt tatatgggcc caatatccga caaaataaat acattattca       660
     gatctacaaa tgtacgtttt gctttccgaa ccatgaacaa tcttaaactc aaattacgtt       720
     caggtaacac aaaaattccc atatacaata acccaggtgt atataaaatc acttgtgctg       780
     attgtgataa cttctacatt ggccaaactg gacgaaattt ccacacgcgg tttaaagaac       840
     acattagaca ttcagaaaac aaccaatcaa aattttttct tcacttaaaa gaacgtcagc       900
     acacggttga taccattgaa catgcactgc atgtactcca taaaattccg aaaggcccta       960
     ttatgactat ccttgaagaa attgaaatct atatacatat acgtaacaat cctcaaaatg      1020
     tactaaatga acaaactgac cttaaacatc aaaattattt taaaaaaatt tattgaattt      1080
     ttcgtcaatg aaaaaggtta ggctctgtgt aacgaaaatc catagataac gtaaaccaac      1140
     agttgaacat ctgtaccaaa cactctctgg aaacatataa gcagcttacg aaaatcgatt      1200
     atagaaataa acgataaaaa catataaaca tatacgcagc tttcgaaaat cgattataga      1260
     aattaacggt aaaacgtaaa attttaagta tacaacatgt acttcaaaac tagaccatat      1320
     tatagcatct ataatttatt aacacagatg tcaaatacgt caaagatata tcaaagcata      1380
     acaacataaa tatctgttgt acatcttttg taaacatatg acatcttagc tgtaactgtc      1440
     aaaatacgca atattatcaa aatctttttg acagttaata taaatatgct ttagatgtct      1500
     tatgtatgtc tgaacatcta gacacatacg taagtagttg ttaagatcat tactgtaata      1560
     ttataatacg acataccatt gttttaatct taatgttacc catttaaaac gcaggtcact      1620
     tgacaatggc astataagcc gaaacggatc tgtagtggtg aaaataaaaa atactcaata      1680
     gcagcgattg gtttaattat aataatatgt cacttgctga cctttttaac gctgcaggcc      1740
     ctatggaaca                                                             1750
//
ID   Penelope-88_LMi repbase;    DNA;    INV; 2433 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-88_LMi.
XX
NM   Penelope-88_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2433
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 138-138 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2433 BP; 903 A; 470 C; 445 G; 613 T; 2 other;
     aaatgcaagc caagcaacgt taactgtcat tttagacgat ttctaaccaa gaaggccaaa        60
     gcatgtcaac atatttgggt taacaaactg tgcctgaccc gcgaaataac gccgaaatam       120
     actactatca agatcaatgt ggtctcctca gcagttagac aagcccccaa gtgtgagacc       180
     atcttmgagg agatctggaa ttagcgctac agatagatct agtcacgaaa gtaaagtgtg       240
     cagaagaaat taagcaggca caagtgcaac aacaaacaac atgtaggaac aatagtgagt       300
     tgtgggacat aaagaagctg aaaactagga ttgaaaacaa caatgtgatc ataacaaatc       360
     agataaagga gagacgcttg tgctgttaaa caaaacagat tacacaaaga aagttgaagg       420
     ttttttccgg tcagttccgc tagtaaaact tcagaaagat ccaacaggta aatacagcga       480
     ggaagcgaag cagttagtta agaaatatac caatattttc acagaatatg actgtaaatg       540
     gattctacaa atgaacccaa gggctccaca actgtatggc ttacccaaac tccacaaacc       600
     agaagtgccg atccgtccag tggtgtcagc aatacaagca ccagtgcaca aattgccaga       660
     agaatcaacg ccatcatcaa gcaaaacctc aacttcaaag gacaacatag tattaagaac       720
     agtttagact tagtaaatag gataaaagat gttcagattc caacaaacgc caaattagtt       780
     tcctttgatg tacagagcct tttcacaagc attcctgtga aagactgtat agatgtgttg       840
     tcatattcat tgtttgtaca aaatattact catgaggaac acctgagcat aatcaacaca       900
     gtagaatgtt gtctcaatca aaattatttc tgctttcaag ggaactatta caaacaagct       960
     gatggcttgg caatgggctc tccattgtcc cccttgctgg cagaaatgtt catggataag      1020
     tgggagacag aatttcttaa aagtgaacca ctggcacaac atgcagtata ctggtataga      1080
     tatgttgatg atatcctttg cctgtggaaa ggttccacca gacaacttca gaaattcttg      1140
     gaaaatatga accagtggca ttcaaacatt aaggttagca tggagttagg aggtcccacc      1200
     attaattttc ttgacatcag catactaata gaaaatagaa gccataaatt taagatcttc      1260
     aggaaagaca cctttactga caccttcatc ccggcttcct ctcagcaccc aacagcgtac      1320
     aaacatgcag cattccacca tatgataaac cgactcctgt ccattcccat gacccaagaa      1380
     gaccatgacc aagaactaga cacaataaaa accatagcaa caaataatga ctttcattcc      1440
     tccataattg acaaaattct tgacaagaaa aagaagaaag tagcaagatc cctactctac      1500
     ccagtaagct ccactgaaaa atcaaaaagt aaatggtgta ggttaccttt cataggtaaa      1560
     atttccaata ggctatgtaa cattttgaaa gcaaaggact tttcagtata tttctatgtc      1620
     ccacataact taggtaaaag tctgttcaat tcaaaggaca gacagacagc cattatgaac      1680
     agtggtgtat ataaaatcag ttgtaaagag tgccagtcct gttatatagg acagacaggt      1740
     cggtcaattt gtaccaggct tagggaacac cacaggagct ggagattaag aaaaccagat      1800
     tctgcctttg cccaacactg cttagaacaa gagcacaaat acgccataga tgtaaaagtc      1860
     ttacatgttg aaggtaaagg tgcaaaactg acccaactag aaattttgga gattaaaaaa      1920
     cagatgcgca cagccccaaa tttgatactg aatgaacaga cagaattcaa ttattcacct      1980
     cttttagact atgagtaact tctacatagt agataataac aatatcacta acatgagggg      2040
     ccataggcaa gaagcaaggt cttgtactat aaactgttca atttttcgag gtacaataat      2100
     gatcagtaat ttcactaata gataacatca ttaaacacaa tattagtaca atagataatt      2160
     aaggttattc taataaggta atgcaagtgt aatagttcct aaattgcaag gtaaaagtat      2220
     tttcttccaa tgttaaaatc gataaacaga gacctgtagt aacataatgg tttgtcttca      2280
     ctggtgtaac aactttggaa tcagtaaagt acttgaaaat gggctcataa cccgaaacct      2340
     aggtcgtaaa aataaagttt tgtgaaacaa ggcaataaca agtgttcagt tatttaattt      2400
     gaaatgtttc accaagaacc gacagtagaa tca                                   2433
//
ID   Penelope-89_LMi repbase;    DNA;    INV; 1953 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-89_LMi.
XX
NM   Penelope-89_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1953
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 139-139 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1953 BP; 655 A; 399 C; 314 G; 570 T; 15 other;
     ctwagakttc aatasctttt ctttcaatga tagaatatat gtacagmaag atggcctagc        60
     cawgggaaat tcccttgtgg gaacaatagc ggaatttttg tcaatatttg agacagcatt       120
     tcaaaaaaag watccakcaa tttttaataa ataatctact acaaacatta tgtgacaaca       180
     ctttactgta aaataaaggc tcagaagaag aactgaactc aataactatt gctctcagta       240
     atgtacatcc aaacttgacc ttcacaattg aacatgaaaa tcaaggctcc attaatttct       300
     tagacctaas catttctaat cacaatggaa aacatttttt cgccatcttt cggaaaccaa       360
     caatgacaga tgtcactagc tgccatccaa taaaatacaa acgagccttt ttcgagcaat       420
     gataaataga wtgattaaat tacctctaac agcaaaccaa aaacaaaggg aattaagtat       480
     cttaaaacaa attgcgtcta caaatgagta tgactcagaa atagtcgaaa acctttttca       540
     aaaaatacag taaaaaagcc acgaccaccc tctaaacaaa tattctaaaa tgatttatat       600
     gggaacagct tctagcagaa tcaatagact atttagaaat actgatgtaa caattgcmtt       660
     ctcaacmaca aatmtgctct ctaacaaatk aggcatacta tcgggaacac caataaactt       720
     cactttgctc gggggtgtat aaattgacat gttcagtttg tgacaaggtg tacattggac       780
     agacagggcg caactttgtg acacgtttca aagaacacat ttcaggtgct tcacagaaaa       840
     gatcaatttt tggacamcac ctcataaacg ataagcatcc tgaaggtgac attacacagt       900
     gtcttaaggt tcttcacact gctcctaaag gtttgctatt gaacwccttg gaagaattag       960
     aaatatttac ttactataaa aataatccct tgacactcct caagaacagt tggattttcg      1020
     tgagaaaact tttttcgatc ttttcgaagg tgtcatttaa aggatggctg cttttactgc      1080
     taattcacta ccatagtact gattacctct tctatttaat ggtcctttat gtaataatta      1140
     ttataatgca ccaacgtctc catggaaacg gcgtccccga cgtcaccaac cgacgccata      1200
     aaatgacgac cgcagacagc catcacacac taacatcttt atggaaacga catccctggc      1260
     gacaccgacg ccagcagatg acgacgcaaa tactgtctgc tgtgttccat gtggacatca      1320
     ataatcaaat agaatcgaca tggcaacgta tgtctaccta aaacatctct gactgtaagc      1380
     agccatggta ccatagaaac ggcgtccctg acgtcatcaa ccgtcaacag cagacgacga      1440
     taacatcggc cctcgtttta aatgatttta attgttttga gcactgtttg taatttgtac      1500
     aacattcctt tttacattat taatgtaaaa atgattatac atatttaact ttattcgtta      1560
     attttaactt actatgactg tcaattccca ttggctggcg ctgacgtcat gaagatacac      1620
     gcgcgcgagt tttagctatt taaaccatgg caactcagcc atcagcagca gtttattgac      1680
     tgtgacggaa cgtcgctgct cgtgaccacc agcaacagcc aaatgggtaa tgctacgctt      1740
     tttattcgtc atttgtaaac agtaatatgt agttctgaca tctgtttgta acgcagtatc      1800
     ttctgtattt tatttacagt ggattatatc tgaagatggc aatagattgt tgccgaaacc      1860
     ggtcatttta aaaataaaat attgcgatct tagactgttt aattaattta tcttgttata      1920
     acagatcgct gaactcccac aacaatgttt aaa                                   1953
//
ID   Penelope-8_BTa repbase;    DNA;    INV; 2651 BP.
XX
AC   .
XX
DT   25-JUL-2018 (Rel. 23.08, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-8_BTa.
XX
NM   Penelope-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-2651
RA   Bao W.;
RT   "Penelope retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 962-962 (2018).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence. Incomplete at the 5'-end.
XX
FH   Key           Location/Qualifiers
FT   CDS           183..2096
FT                 /product="Penelope-8_BTa_1p"
FT                 /translation="MALIREFRSLASEYDVDNIIAKLEAKIHFESEQTKKE
FT                 VRARTTKVLTNFFSCVNNGKINKNKIEKISPAAKIWLKNLENDIKKTKKFL
FT                 SQNKDLLIVEADKNGKSVIISAEAYNTKMMSLLDDNTTYKKVKRNLTSTQQ
FT                 LKNNSMVNNWFKNNYIEKNRRDALITKDAQPPQIYGLAKTHKPDMPLRPIV
FT                 SCIKSSFNKMTLFLVQILANIIGKSKYHIKDSFHFQKFIKHQRVPKGYMLV
FT                 SFDVVSLYTNIPVELALEDVENNWEKLKNLTKLPKTEFVYAVKVCLENTFF
FT                 QYQDSFYQQIRGLAMGAPVSACLANLVVEHLENEVLRKCKKSVLFYKRMVD
FT                 DCLLCIRKRDVQRVLAEFNSFHPSIQFTCEVEQNNSINFLDLTLDHSRGPK
FT                 IYTKWYQKPAHSGRYLNFLSSVPYRHKINVMKNLFQRIIRLTDKCYLNESI
FT                 DKAKKLLGQNCYPAVLVKKFAKQCQHAERFKIKKSKPKFNVENIVKLPYIP
FT                 DLSEKLRKSLKPLGFETLFNNRNSNKSMYPRLKNKVPTHKMSNVVYQIECN
FT                 ECPGKYIGQTKRYLEDRIKSHRYDSKEMTALHQHEREKGHTFNFQNPKILI
FT                 QEPNLRTRLIQEAIKIKRCSTAVNSRGDTSCLNAIYDQFF"
XX
SQ   Sequence 2651 BP; 942 A; 464 C; 429 G; 816 T; 0 other;
     gaaagttact cagattccga gataatggta aaccctagac ccgtaaaagg gtgtgttttt        60
     gctctgactt ctttttttgt ctgctcagat tcaaaatgaa tatttgcctc taaattggca       120
     ataatgttat caacatcata ttcagatgct aaattagcta atcccctacc ttgctttctt       180
     tgatggcttt gataagagaa tttaggtcct tagcatctga atatgatgtt gataacatta       240
     ttgccaaatt agaggcaaag attcattttg aatctgagca gacaaaaaaa gaagtcagag       300
     caagaacaac aaaagtgctg acaaattttt tctcttgtgt taacaacgga aaaataaaca       360
     agaataaaat agaaaagata tcaccagctg ctaaaatatg gctaaaaaat ctggaaaatg       420
     atattaaaaa aaccaagaaa tttttatcgc aaaataaaga tttactcatt gttgaagcgg       480
     acaaaaatgg caagagtgtt atcatatctg cagaagctta taacactaag atgatgtccc       540
     tacttgatga taatacaacc tacaaaaagg tgaagagaaa tctaaccagc acacaacaat       600
     taaaaaacaa ctcaatggtt aataattggt ttaaaaacaa ttacatagag aaaaatagac       660
     gagatgcatt gatcactaaa gatgcacaac ctcctcaaat atatggatta gcaaaaactc       720
     acaagcctga tatgcccctt agaccaattg tgagctgcat aaaatcatct tttaataaaa       780
     tgaccctctt tttggtgcaa attttggcaa atattattgg aaaaagcaaa tatcatatta       840
     aggattcatt ccactttcaa aaatttatta aacatcaacg tgtcccaaag gggtacatgt       900
     tagtttcctt tgacgtagta tccctatata cgaacatccc tgttgaacta gctttagaag       960
     atgtagaaaa taattgggaa aaactcaaaa acctaacaaa gctccctaaa accgagtttg      1020
     tctacgctgt caaagtgtgt ttagagaaca catttttcca atatcaggat tcgttctacc      1080
     aacaaatccg cggtctagct atgggtgcac cagtatctgc atgcttggca aatcttgtcg      1140
     tggaacacct tgaaaatgaa gtactgcgta agtgcaaaaa aagtgttttg ttttataagc      1200
     gcatggttga tgattgctta ctttgtatac gaaaaagaga tgtacagcga gtacttgctg      1260
     aatttaactc tttccaccca tccatacaat tcacttgtga agtagaacaa aataattcaa      1320
     ttaatttcct tgaccttacc ttagaccata gtaggggacc taaaatatat actaagtggt      1380
     accaaaaacc ggcacactca ggcagatacc tcaatttctt atcatctgta ccatatcgac      1440
     acaaaataaa tgttatgaaa aatcttttcc agcgtattat tagactaact gataaatgtt      1500
     atctcaatga aagcatagac aaagcaaaga aattgctagg acaaaattgt tatcctgctg      1560
     tattagttaa aaaattcgct aaacagtgtc agcatgctga aagatttaaa atcaagaagt      1620
     ctaagccaaa atttaatgtt gaaaacattg ttaaattgcc ttacatccca gatttgtcag      1680
     aaaaattgcg caagagtttg aaacctttag gttttgaaac tttgttcaat aaccgcaaca      1740
     gtaacaaaag tatgtatccc agacttaaaa acaaagtgcc tactcataaa atgtcaaatg      1800
     tggtttatca aattgaatgt aatgagtgcc ccggtaaata tatcggtcag acaaaacgat      1860
     atctcgaaga tcgcataaaa tcacacagat acgactctaa agagatgact gctcttcatc      1920
     agcatgaaag ggaaaaaggg cataccttta acttccagaa ccctaaaata ttaatccaag      1980
     aacccaatct taggactagg ttaattcaag aggcgattaa aataaaaaga tgttccacag      2040
     cagtgaattc acgaggcgac acaagttgtc ttaacgccat ctatgatcag tttttctaat      2100
     tatgtgttag tctatggagt ggccgacaag tggcgctctc tttttgtaat tgatttaact      2160
     tcaatataga gcatccacat atactacatt gctccttgta taatttctgt ttacatattt      2220
     acctgtttgc ctttatcact tgcataaatt agctacttat aattttatta atattttaaa      2280
     gaaaattgtc aatatttctg acttgtaatt caaaatctaa ttttagtgct tgtttcctgg      2340
     ccaggtgttt cttttgtgaa gtgtgcacac tacattgcat gatgtcttac tttattgtaa      2400
     tgtatttcag gtatcagtaa tctctttgtt aagttttgta cttttcattt tccactttta      2460
     atttgcactg atgaaggtcg tagatacaat ggccgaaacg tttgcttgta aatgacacct      2520
     tatgcttgat acttaacaat cctgtgttgt cctgatgtta agtagaaaat aaaaaaagtt      2580
     ttttggctaa ttaagctcaa tgttaattct aacctctgaa aatattaagc cagccgaaag      2640
     gcatttcaca a                                                           2651
//
ID   Penelope-8_CoFl repbase;    DNA;    INV; 2055 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-8_CoFl.
XX
NM   Penelope-8_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2055
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2413-2413 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Possibly 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..1560
FT                 /product="Penelope-8_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="TEFIDIVKFILQNNYFVFNRSCFKQKFGCAMGNPLSP
FT                 ILSELVMNDLEQYCLNKLPFKLQFYVKYVDDLLLCSLEDNIDTILQTFNSF
FT                 DPYIQFTLENPTLRIINFLDITIYFNSDKIITNWYRKPSHSGQYLNFESHN
FT                 PLQQKIGIVYNLVDKNIKLSNNKFHKENFEIIKKLLKANNYPLKFIDTYIK
FT                 KRLNILNKKDSYKNHSITPYNDYIVLPFSKDYEYEIKKISKKYNINVIFKN
FT                 INKININNQLGKDKIEPRYKPNIVYKINCLDCHRYYIGQSSRTLQTRVGEH
FT                 MRDVKKKDDRSALYYHVKDSGHNIDFEYSNVQILDVENVRSRREVSEMIHI
FT                 SRNIHNLNRQFDTQNLLPIFKEFIKSNLH"
XX
SQ   Sequence 2055 BP; 820 A; 294 C; 265 G; 676 T; 0 other;
     attttgaaac aattagaaaa tgctactaat aaagtaatta aaaaattaaa taatattgac        60
     aatatttgtg aggaagataa ttattacaac aaaaaattcg atactgtatt aaataaatgc       120
     gttttagcat tctgttatgg gctaacaaaa ctgcataaaa ttgactaccc aattagaatt       180
     attatttctg caataggcac tcctacttat actttgtcaa aagttttagc caacttttta       240
     tataaatata gccccaaatc acaatacagt ataaacaata gttttcaatt aatagaaaaa       300
     cttaaaaacc aaaaaatccc atcaaattac aaatttttta gtttagatgt tacagccctt       360
     tttaataata tacatatccc cctaatagtt tcagctctaa ctgagagatg gcaacattat       420
     ggcatacata taaatttatc atgaacagaa tttatagata ttgtaaaatt tattttacaa       480
     aataattatt tcgttttcaa tagatcatgt tttaaacaaa agtttggctg tgcaatgggt       540
     aatcctctta gccccatact ttctgaattg gtaatgaatg acttagaaca gtattgttta       600
     aataaattac ccttcaaact acaattttac gtaaaatatg tagacgactt acttttatgt       660
     tctctagagg ataatataga tacaatacta caaacgttca acagttttga tccatatata       720
     caatttactt tggaaaatcc aacacttaga ataataaact ttttagacat tactatttac       780
     ttcaattctg acaaaatcat aactaactgg tatagaaaac caagtcattc aggacaatat       840
     cttaattttg aatcacacaa ccccttacaa caaaaaattg gaatagttta taatttagta       900
     gataaaaata taaaactgtc taataataag ttccataaag aaaattttga gataattaaa       960
     aaattattaa aagccaataa ctatccatta aaatttattg atacatacat taaaaaaaga      1020
     ctaaacatat taaataaaaa agatagttat aaaaatcata gtataacccc atataatgac      1080
     tatattgtct taccgttttc aaaagactat gaatatgaga taaagaagat ttcaaaaaag      1140
     tacaatatta acgtcatttt taaaaacatt aataaaatta acataaataa tcaattaggt      1200
     aaagacaaaa tagaaccgcg ttacaaacca aatatagtgt ataaaattaa ttgtctagat      1260
     tgtcatcggt attatatagg tcaatcaagt agaactctgc aaacacgagt tggtgaacac      1320
     atgagagatg ttaagaaaaa agatgacaga tctgcattgt attaccatgt gaaagattca      1380
     ggacacaata tagattttga atatagtaat gtacagattt tagatgttga aaatgtaagg      1440
     agtaggcgtg aggtatcaga aatgatacac ataagtagaa atatccataa cttgaataga      1500
     caatttgata cacaaaattt attaccaatt tttaaagaat ttatcaaaag taatttacac      1560
     tagccgcaga caacagcata ataactaaat aaattttatt caaaaatatc atttcatata      1620
     ggtcacgcct tctctaatac atacattaac catttcaact cttgcacatg tatgtattgg      1680
     tattggtcct gcctcataga tacctgtcct cggtatagaa attaattttc gttagtatgt      1740
     tcgagtcgct tacaggctac agtcaattaa gtaagatctc gacaaatgta agcgatcacg      1800
     taaagcctgt atactgtgat ataattgtaa gttttagtgt tttaaactac gagcgattgt      1860
     ataattgttt acctttttat taattttgtc atgatttgta tgaaatttat agtgcttgaa      1920
     aagggcctca ttctaaagtg gccgaaacgt tgctttaata aataaataaa gaccattgga      1980
     cagcattgcc gttggagtca tactttaata ttgcaatatc ctgctgtcgt cagattcata      2040
     gtattacaaa taatt                                                       2055
//
ID   Penelope-8_FoCa repbase;    DNA;    INV; 2699 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-8_FoCa.
XX
NM   Penelope-8_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2699
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2741-2741 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..2493
FT                 /product="Penelope-8_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MADHNILGGWKKFYEILRKLRGEASEEIIHDIKKLES
FT                 SYKQDIHLTNHIIFLRRCKKHGIMPKGLQLKEFPRRFGPHEKMNKMQQHTE
FT                 SRLLNCMININYTKSNHVQIDITKLRSSIRSSIPSLWNWLCNLMNTMRNIV
FT                 HLKISRTQKEKFKTLMEKNVDQFFSKIYQTNKDLLCKPTINNMSSRPLTKF
FT                 EEQLLNLGLNFSLPVKNVGYAMCDTAATIELRMMDMELTDXQKNNIRTGVA
FT                 KIMSQNIQKEKIKQRWEAWIRNSIKSLLEDETICITKADKGNSVVIMDRNK
FT                 YMEKMSXMIGTGPYTILNHDPTPLYAKLVAEKCHKLTELKLLPENLLEKTP
FT                 RSPIIYGAPKIHKKDIPLRPIVDYRYSPTYKLSKYLANILTKVASNHEFTI
FT                 KNSTEFVEELKKKRSRLGDKKVSFDVTSLFTMVPIPETLEYIKQRLEEYPD
FT                 LKKLTSLPIDDIMSLLELCTSSSYFQFQNKYYKQNYGTAMGSPLSPIIAEF
FT                 FLQKLELTKIKNNRSIYFWRRYVDDVLCIARGRNQDKILQDINSFHPSIQF
FT                 TVEEEIDGKIPFLDIVIYSKNDSSLGHYVYRKPTQTCQYLNFRSFHPRAHK
FT                 IGVIDTLLTRAIRLSDDEHVKDEIELTKIILMKNEYPPSLINDRLRRVKNK
FT                 CLQPPNNKKDEEIKKRIILPWAGDVTSKIASYLRNKMDVDIGYFPGPKIGS
FT                 IVCNAKQKLQKPRAGVYSIQCNSCPAVYIGETERDFMIRIAEHQNDIRRES
FT                 TTSPVAAHMIENDHQLDPNSFKLVVPENRKFFRKFKEALHIKKLTNKINIS
FT                 NGVNINPIWSSTLLNFL"
XX
SQ   Sequence 2699 BP; 1052 A; 527 C; 429 G; 680 T; 11 other;
     aataaaatca agaaataatc cccgaaaacc gcagaaatgg ctgatcataa tattctcgga        60
     ggatggaaaa agttctacga aatccttaga aagcttcgcg gtgaagcaag tgaagaaata       120
     atccacgata taaagaaatt ggagtcatca tataaacaag atattcattt gacaaatcat       180
     atcatattcc tgagacgctg taagaaacat ggtatcatgc caaaaggact acaactcaag       240
     gaatttccga gaagatttgg accccatgaa aaaatgaata agatgcaaca acacactgaa       300
     tcaagactac taaattgcat gataaatatc aactacacca agtcaaacca tgttcaaatt       360
     gatattacaa aactaagatc aagcattcgt tcatcaatcc cgtctttgtg gaattggctt       420
     tgtaatttaa tgaacacaat gagaaatatc gtccacttaa aaataagccg aactcagaag       480
     gagaaattca aaacattgat ggagaaaaat gtggatcaat tttttagcaa aatttatcag       540
     accaataaag acctactatg caaaccgacc atcaacaaca tgtcatctcg tcccctcaca       600
     aaatttgaag aacaattgct caatttggga ctwaatttct cactgccagt aaaaaatgtt       660
     ggctacgcaa tgtgcgacac tgctgctaca atagaacttc gcatgatgga tatggaactg       720
     acagatmatc agaaaaataa tatcagaacc ggagtagcga agataatgtc tcaaaacatt       780
     caaaaagaga aaataaaaca acgctgggaa gcmtggataa gaaattcmat caaatcactg       840
     ctagaagatg aaacaatttg cattacaaaa gctgacaaag gaaattctgt wgtcatmatg       900
     gacagaaata aatacatgga aaaaatgtca wcmatgattg gaacaggacc atatacaatt       960
     ttaaatcatg atccaactcc actatatgcc aaattggtag ctgaaaagtg ccacaaactg      1020
     acagaactga aacttctgcc agaaaatttg ttggaaaaaa ccccaaggtc accaattatc      1080
     tatggagccc caaagatcca caagaaagac attcctttac gcccaattgt tgactaccga      1140
     tactctccaa cctacaaatt gtccaaatac ctagcaaaca ttttaacaaa agttgcttca      1200
     aatcatgagt tcaccatcaa aaactctaca gaatttgttg aagaactaaa gaaaaagaga      1260
     tctcgacttg gagataaaaa agtttccttc gacgtcacat cactgtttac gatggtacca      1320
     attccagaga ctcttgaata catcaaacag agattagaag aatatccaga tctaaaaaaa      1380
     ttgacctcat tacccatcga tgatatcatg tcactcctgg aattatgcac atcctcttca      1440
     tatttccagt ttcaaaacaa atactacaag caaaactacg gtactgcgat gggatcacca      1500
     ctatctccaa taatagcaga atttttctta caaaaattgg agttaaccaa aattaagaat      1560
     aaccggagta tttacttttg gagacgctac gtggatgacg tactgtgcat agccagagga      1620
     agaaatcaag ataaaatact gcaagacatt aatagttttc atccctccat tcaattcaca      1680
     gtagaagaag aaattgacgg aaaaatwcct tttctggata tagtmatwta ctctaaaaat      1740
     gattcctcct taggtcatta tgtatacaga aaaccaaccc aaacgtgtca gtacctcaac      1800
     ttccggtcat ttcatccacg agcacacaaa atcggagtaa ttgacacctt gctgactcga      1860
     gccatcagac tttcggatga cgaacacgtg aaagatgaaa ttgagttgac caaaatcatt      1920
     cttatgaaaa atgagtatcc cccatcatta atcaatgaca gattaagaag agtgaaaaac      1980
     aaatgcctac aacctcccaa taacaaaaaa gatgaagaaa tcaaaaaaag aattattctt      2040
     ccctgggctg gagacgtaac atctaaaatc gcttcatatt taagaaacaa aatggatgta      2100
     gatattggct actttcctgg tccgaaaatt ggatcaattg tatgtaatgc caaacagaaa      2160
     ttgcaaaaac caagagcagg agtttacagt atacaatgta attcgtgtcc tgctgtttat      2220
     atcggtgaaa cagaacgaga ttttatgatc agaattgccg aacatcagaa tgacatcaga      2280
     agagaaagta caacctcgcc tgtcgcagct catatgatag aaaacgacca ccaactggac      2340
     ccaaattctt ttaaactcgt tgtcccagaa aacagaaaat tcttcagaaa gtttaaagaa      2400
     gctctgcaca ttaaaaagtt aacgaacaaa attaacatat ccaacggagt caacatcaac      2460
     ccaatctggt cctcaacact actgaatttt ttataattta accgtgacta agtaacattt      2520
     atttgaaaat tactctttcc aaaaaacata acttgtcaaa ggaatgtatt gtttagattt      2580
     gtatccgaaa tctttgtatt acttgcctga tgaagatgac agtagttcat tgaaagctag      2640
     caattttcaa caataaaatc aagtaataat ccccgaaaac cgcagaaatg actgatcat       2699
//
ID   Penelope-8_LMi repbase;    DNA;    INV; 2587 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-8_LMi.
XX
NM   Penelope-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2587
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3183-3183 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(339..2096,1985..2506)
FT                 /product="Penelope-8_LMi_1p"
FT                 /translation="MSDWAHRSAVDKQSSKFQRLSRPSISHNTNRRTVINF
FT                 TDKELDDAMLSVLEKGLNFAPTPKNVPLTEFICSVEQAVSKLPGDQAEEIR
FT                 QEVAHTLRRAPPPRSNISPLERAAIRSLREDQDLIILPADKGNATVLLSRD
FT                 DYLRKMDCLLDDSAYRRLQKDPTERIKRMTLSLLKKSSLSDDVLKKLHPGA
FT                 AVPPRLYGLPKIHKQEVPLRPIVSNLGAPTYNLAKHLASVLSPHVGKCEHH
FT                 IPNSMDFIQRLKSLRLSPSDLLVSFDVVSLFTRVPLEESLQLIGEKVDKET
FT                 AELCRHVLTSTYFLFNDKFYEQTDGVAMGSPLSPIVANLFMEDFEDMALKT
FT                 AALKPTCFWRYVDDTFMVWPHGEEALNRLLDHFNCMHPNIRFTMEVEKEGK
FT                 LPFLDVLVYRRDDGKLGHSVYRKPTHTDRYLHASSCHPPVQRTGVLRTLTR
FT                 RAYAISDAESLTQELDHLKVVFKQNGYTDKQIRCAFQFGPSPEPLNETHKS
FT                 VAFLPFAGSISSKIGRILKKHDIKSVFRPPVKTRALLGSVKDDLGLRKPGV
FT                 YKIPCQCGKTYIGQTSVPFRTDVLNINATHVCSSPRSRRDSLSMWENVYWS
FT                 DIRTIQDRCVEHQRHTRLLQPEKSAVAEHCLDEGHRMLYNETHMVASASRY
FT                 WDCVLKESIEIRLSDNLINRDKGYLLSKSGTLCYQMLKNNGWYFRNLNNNF
FT                 LIIDYRFRRILPPERCMSCAPEGSYCHFLRTRYGSSAMYKGAADCTGNSVP
FT                 ARLCTSTLT"
XX
SQ   Sequence 2587 BP; 703 A; 547 C; 605 G; 729 T; 3 other;
     tcacatcaga aacctctacg gggaggagat ggttgaatcg tgggaagact ggataaactt        60
     cgcaagaaga agggtaagct gctgagcgct cttgcttttt tattgagatg tcgtagtgaa       120
     agtatcatac cgaagttcgc caagtttgtg cattacattg atcgaaagtg gccaataaca       180
     tcaaaaaacg tgctagtctt gccctaataa gggagcgcat tcgttttact agaagacaat       240
     tggatctcgt atccaaggac ttattttatt tacatctaga ggtatcttca cggctgtcgg       300
     ctgcatcttg ggaatgggtt gatagctctt cgtgggctat gtcagactgg gcgcatagaa       360
     gcgcagtcga taagcagtct tccaaatttc aacggctttc tcggccttcg atatcgcata       420
     acaccaatcg aagaactgtt attaatttca ccgataaaga attggacgac gccatgctgt       480
     cggtattgga aaaaggcttg aactttgccc ccacacccaa gaatgttcca cttactgagt       540
     ttatttgttc mgtcgaacaa gcagtgtcca aactacctgg ggatcaggcg gaggaaatta       600
     ggcaagaggt tgctcatacg ttgcgtcggg cgccgcctcc acggagtaac atctctcctc       660
     ttgaaagggc agcaattcgg tctcttagag aagatcaaga tctaattatt ttaccagcag       720
     ataaaggcaa tgccacagtt cttctttctc gggatgatta tctacgaaaa atggactgtt       780
     tacttgacga ttcagcttat cgsagactgc aaaaggatcc aactgaacgg ataaaacgta       840
     tgacgctttc acttttgaag aagagctctt tatctgacga cgttctaaag aaacttcatc       900
     ctggtgcggc tgttcctccc aggttatatg gtttacccaa gatacacaag caagaggtcc       960
     ctcttcgtcc gattgtaagt aatttgggcg ctcctactta taacttggcg aaacatttag      1020
     catctgttct tagcccacac gtggggaaat gtgaacacca cattcccaac tctatggatt      1080
     ttatacaacg tttaaaatca ttgcgcctta gtccttctga tttgctcgtg agttttgatg      1140
     tagtgtcgtt gtttacccgg gttcctctgg aagaatctct gcaattgatt ggtgaaaagg      1200
     tggacaagga aacagctgag ctttgtcgcc atgtacttac atcgacgtac tttttattta      1260
     atgacaaatt ttatgaacaa actgacggtg ttgctatggg gagtccatta tcccccatag      1320
     tagccaatct ttttatggag gacttcgaag acatggcatt gaagacggcg gctctaaagc      1380
     caacttgttt ttggaggtac gtcgatgata cwtttatggt gtggcctcat ggggaagaag      1440
     ctcttaaccg ccttttggac cattttaatt gcatgcatcc taacatcagg ttcacaatgg      1500
     aagtggagaa ggaggggaag cttccttttc ttgatgttct ggtttacaga agagatgatg      1560
     ggaaactggg acatagtgtt tatagaaaac ctacgcacac ggaccgctat ctgcatgcct      1620
     cgagttgtca tcctccggtc caacgtactg gcgttcttcg gacattaact agaagagctt      1680
     acgccatttc tgatgcagaa agtttgacgc aagaactaga tcatctcaaa gttgtgttta      1740
     aacagaatgg ctacacagat aagcagatcc gctgtgcttt tcagtttggt ccttcacctg      1800
     aaccattaaa tgagacccac aaatcagttg ctttcctacc ttttgccggg agtatttcat      1860
     caaagatagg aagaatttta aaaaagcatg acattaagag tgtttttcgt ccgccagtaa      1920
     agacgagagc acttctcgga tctgtgaagg atgatttggg tctgaggaag cccggggtat      1980
     ataagattcc ctgtcaatgt gggaaaacgt atattggtca gacatccgta ccattcagga      2040
     cagatgtgtt gaacatcaac gccacacacg tttgctccag cccgagaagt cggcggtagc      2100
     tgagcattgt ctcgatgagg gacatagaat gttatataat gaaactcaca tggttgcttc      2160
     agcatctcgt tactgggact gtgtcttaaa ggaatccata gagatccgat tatctgacaa      2220
     tctgattaac agagacaaag gctaccttct tagtaaatct ggaaccctgt gttatcagat      2280
     gttaaaaaac aacggttggt acttcagaaa tctgaataat aattttctta tcatcgatta      2340
     tcgatttcgc cggattctac caccggagcg ctgtatgtct tgtgcgccag agggcagtta      2400
     ctgtcacttc ttgcgcacgc gctatgggtc ttccgcgatg tataaaggag ccgccgattg      2460
     cactgggaac tcagttccgg cgagattgtg taccagcacg ctcacctgag gatggcgggc      2520
     agttgcgccg ctgaaatatt gtgtcaagtt gactttagta tccggctgca aacccgagaa      2580
     gattaca                                                                2587
//
ID   Penelope-8_TrVa repbase;    DNA;    INV; 5910 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-8_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-5910
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 633-633 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It includes terminal inverted
CC   repeats. It also includes an internal duplication.
XX
SQ   Sequence 5910 BP; 2289 A; 872 C; 798 G; 1941 T; 10 other;
     ttaaagttgt tgagattgaa catcaccatt gtgtaaatta aaaataatga aaacaagaaa        60
     ccgaagtgat gtaggatatt gacttttatt gtactttaga cgtctttcgg cttttagcca       120
     tcatcagaag tatgtaacac ggggaaaaaa cataactaat aaaataataa cattttaacg       180
     aactataaaa tgtagtcaga aataaataat aaaataaaac acagcaatgc agactagtat       240
     agaataggat gacaatcaaa aaacaatatt tggatacagg ttaggtaact agatgtaaac       300
     aawgatcaga ggaaaatcag tcattgtgat tattatcaac caggtcgcag cactttgcaa       360
     gtaagcaatt gcgcgcggaa tctatctctg tttgaatatt cagcagattg gagttatttc       420
     tagttgcttt aacaatttca aatttttcca atacattaat gagatttttg tctttgtttc       480
     tatgcagtac agtaacgttg ttatttattg agtgtttctc atctctaata tgtctatata       540
     catttgactt ttcattttgt agatgttctt ttagtctaat ttttatggac ctttctgttt       600
     ttccwatata taatttctca caatcattac agttaatttg gtaaacacca gataagttwc       660
     ttgtgtccat cttggtatta ttacttttgc ttttacattt attagcaatt tttttaatct       720
     gttttataac attgttatta gttgtgaatg cgatttttta atcatgtttt ttgaaatttt       780
     tactaactaa attacaagtt tcattgtaga agttcatttt cctgtattta tgttcactat       840
     tccgtttttc attacatcat gacttgcgtt gtttttgttt ttatgtttat ctaaaatgtt       900
     gtttaccaag tacctaggaa aaccatttct atgacaaatt tcatggattg tattaatctc       960
     tttattccta taatgctcat ttaaaggtat tgtgaaaact ctatttgcca tggcatgtat      1020
     ggctgcatgt ttatgactaa tagggtgatt tgagctgtat ggtatgatac aatcagtact      1080
     ggttggctta cgaaagattt taaattgtat acatttcgaa tcatctttga aaatagtgag      1140
     atctaagaaa ttgatggtgt tatccatttt ttcaatagtg aattgtatat ttttattgat      1200
     gccatttaaa taatctaaaa acttattggt gattctgtct gtacctttta aaacatgaaa      1260
     aacgtgtcat ctacgtatct aaaatatttt caatatgttt gaagaaaggt tttttttacg      1320
     ttcattatat tattctcctc aaaattattg aggtaaattt gtgctatagt accagatagt      1380
     ggtccaccca ttgctacacc attatttgac tcataaaatt tacctttgta ttcgaaataa      1440
     ttttggctca ttattatctt aataatttct attaattcag tgatttctgc ttgattcttt      1500
     ttttctgatt tttttaacgc caattcgatt gtgtcaattg catcctgtac aggaatattt      1560
     gaatacaaat taacaattta atttaattaa caakttaatt tgtattcaaa tattcctgta      1620
     caggatgcaa ttgacacaat cgaattggcg ttaaaaaagt cagaaaaaat gaatcaagca      1680
     gaaatcactg aattaataga aattattaaa ataataatga gccaaaatta tttcgaatac      1740
     aaaggtaaat tttatgagtc aaataatggt gtagcaatgg gtggaccact atctggtact      1800
     atagcacaaa tttacctcaa taattttgag gagaataata taatgaacgt aaaaaatcct      1860
     ttcttcaaac atattgaaaa atattttaga tacgtagatg acacgttttt catgtttaaa      1920
     ggtacagaca gaatcaccaa taagttttta gattatttaa atggcatcaa taaaaatata      1980
     caattcacta ttgaaaaaat ggataacacc atcaatttct tagacctcac tattttcaaa      2040
     gatgattcga aatgtataca atttaaaatc tttcgtaagc caaccagtac tgattgtatc      2100
     ataccataca gctcaaatca csctattagt cataaacatg cagccataca tgccatggca      2160
     aatagagttt tcacaatacc tttaaatgag cattatagga ataaagagat taatacaatc      2220
     catgaaattt gtcatagaaa tggttttcct aggtacttgg taaacaacat tttagataaa      2280
     cataaaaaca aaaacaacgc aagtcatgat gtaamtgaac aacggaatag tgaacataaa      2340
     tacaggaaaa tgaacttcta caatgaaact tgtaatttag ttagtaaaaa tttcaaaaaa      2400
     catgattawa aamtcgcatt cacaactaat aacaatgtta taaaacagat taaaaaaatt      2460
     gctaataaat gtaaaagcaa aagtaataat accaagatgg acacaagtaa cttatctggt      2520
     gtttaccaaa ttaactgtaa tgattgtgag aaattatata twggaaaaac agaaaggtcc      2580
     ataaaaatta gactaaaaga acatctacaa aatgaaaagt caaatgtata tagacatatt      2640
     agagatgaga aacactcaat aaataacaac gttactgtac tgcatagaaa caaagacaaa      2700
     aatctcatta atgtattgga aaaatttgaa attgttaaag caactagaaa taactccaat      2760
     ctgctgaata ttcaaacaga gatagattcc gcgcgcaatt gcttacttgc aaagtgctgc      2820
     gacckggttt gataataatc acaatgactg attttcctct gatctttgtt tacatctagt      2880
     tacctaacct gtatccaaat attgtttttt gattgtcatc ctattctata ctagtctgca      2940
     ttgctgtgtt ttattttatt atttatttct gactacattt tatagttcgt taaaatgtta      3000
     ttattttatt agttatgttt tttccctgtg ttacatactt ctgatgatgg ctaaaagccg      3060
     aaagacgtct aaagtacaat aaaagtcaat atcctacatc acttcggttt cttgttttca      3120
     ttatttttaa tttacacaat ggtgatgttc aatctcaaca actttaatct tgatgcctac      3180
     caagctgaga aagcatgttt ataccacaaa catgtcctga aactggaaaa aactaaacta      3240
     aatatctact tcaacaagca atgtcgtaag cagaacataa tacctagata cattaacatt      3300
     acaaccaaga gtaaaacaaa ggcagcacaa cgtacaatca aacatgctga acgattctgg      3360
     attaatgcct cattagacca actattttct aagctaaact atacaattgt gaggattaga      3420
     gaaatcaaaa aacttttata tgatgaaaat attttccaga aagaaatcag aaacaatata      3480
     ttagatatgg tgagaaataa tgtgaattca attatcaacc aaaaacaacg taaaattgac      3540
     aaaaaaatca agtttctcat tcaatcacaa caccaaaaat atatgagtaa ggttcataaa      3600
     gttaattttg cacctagagt ttttaattta tccaatgtac aattcagtga gaaggaatca      3660
     ataatcctca ataatggcat taaactgaat ttaatcaatc aaatcaataa tgtagatttc      3720
     taatcaactg tgaaaaagtc attaaaacaa ctgatacata taaacaaaat gatatcagaa      3780
     atagtattgt aaatgattgt cagagcatca ttaacaaaaa cacccatatt caagataaaa      3840
     gaaataaaaa taaaaaacaa actatgtatc tcaaaggcat aaaatcaata ggccaaaaaa      3900
     taaaagataa taaactggaa attattgatg ttgataaaag taatagcata gccatcataa      3960
     atgaggatga aatttattct aaaattaatg aattcatgac aaataattgt atcaagaaac      4020
     gtacaaatga tccaacgaag aaatataccc caaaatatta ataaaatcat agataaatct      4080
     aaacatatta tccatcctga taggaaaaag tttttgaaat atacaattcc agatcctagt      4140
     aaccacaaca tttaaagcag caaaagcgcc ttctttcaag cctatactca aaaacataaa      4200
     gaaggtaacc ctatacgtcc cctagtaaat actatcggat cacctactta taaattagct      4260
     aaatttattg attccctttt aaaaaataca ctgaatctgg aaaatccata taccatcaaa      4320
     aacagtaaaa cttttgctga caaaatacat aacatgaaaa ttgacaataa cataaaaatt      4380
     ttctcgttag acatagttaa tttgtattca aatattcctg tacaggatgc aattgacaca      4440
     atcgaattgg cgttaaaaaa gtcagaaaaa atgaatcaag cagaaatcac tgaattaata      4500
     gaaattatta aaataataat gagccaaaat tatttcgaat acaaaggtaa attttatgag      4560
     tcaaataatg gtgtagcaat gggtggacca ctatctggta ctatagcaca aatttacctc      4620
     aataattttg aggagaataa tataatgaac gtaaaaaatc ctttcttcaa acatacgtag      4680
     atgacacgtt tttcatgttt aaaggtacag acagaatcac caataagttt ttagattatt      4740
     taaatggcat caataaaaat atacaattca ctattgaaaa aatggataac accatcaatt      4800
     tcttagatct cactattttc aaagatgatt cgaaatgtat acaatttaaa atctttcgta      4860
     agccaaccag tactgattgt atcataccat acagctcaaa tcaccctatt agtcataaac      4920
     atgcagccat acatgccatg gcaaatagag ttttcacaat acctttaaat gagcattata      4980
     ggaataaaga gattaataca atccatgaaa tttgtcatag aaatggtttt cctaggtact      5040
     tggtaaacaa cattttagat aaacataaaa acaaaaacaa cgcaagtcat gatgtaaatg      5100
     aacaacggaa tagtgaacat aaatacagga aaatgaactt ctacaatgaa acttgtaatt      5160
     tagttagtaa aaatttcaaa aaacatgatt ataaaatcgc attcacaact aataacaatg      5220
     ttataaaaca gattaaaaaa attgctaata aatgtaaaag caaaagtaat aataccaaga      5280
     tggacacaag taacttatct ggtgtttacc aaattaactg taatgattgt gagaaattat      5340
     atattggaaa aacagaaagg tccataaaaa ttagactaaa agaacatcta caaaatgaaa      5400
     agtcaaatgt atatagacat attagagatg agaaacactc aataaataac aacgttactg      5460
     tactgcatag aaacaaagac aaaaatctca ttaatgtatt ggaaaaattt gaaattgtta      5520
     aagcaactag aaataactcc aatctgctga atattcaaac agagatagat tccgcgcgta      5580
     attgcttact tgcaaagtgc tgcgacctgg ttgataataa tcacaatgac tgattttcct      5640
     ctgatcattg tttacatcta gttacctaac ctgtatccaa atattgtttt ttgattgtca      5700
     tcctattcta tactagtctg cattgctgtg ttttatttta ttatttattt ctgactacat      5760
     tttatagttc gttaaaatgt tattatttta ttagttatgt tttttccctg tgttacatac      5820
     ttctgatgat ggctaaaagc cgaaagacgt ctaaagtaca ataaaagtca atatcctaca      5880
     tcacttcggt ttcttgtttt cattattttt                                       5910
//
ID   Penelope-90_LMi repbase;    DNA;    INV; 1551 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-90_LMi.
XX
NM   Penelope-90_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1551
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 140-140 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1551 BP; 650 A; 292 C; 214 G; 395 T; 0 other;
     acgctcgatg cgctgcggcg gttagcaggc aaacagactg cctggcggaa gtttgtacac        60
     aaccaccatt cgactgaggc gagcttccac agcaggcacc ggtgatgttg taacaactag       120
     tcttaagcag aactattttc cgaaattaca atagatatat tgtttaggtg ttaatgttac       180
     aataatgtta atataatatt attaatgcaa aatcatgcca cccaaaagca cacaaatatg       240
     cctacttcaa taccatgata aacagactga taaacttacc gttagaacat gactcaatac       300
     aaaaagaaat caaaatccta gaatatatag ctcagaaaaa cgactatgat ccaaaaattg       360
     ccactcaaat atataataat cgtaccacac caacaaaaac tcatatacga aaagaaataa       420
     cactaataag ggaaacacca acaaaacaaa aatttaagta cgtaaaaacc acatttctag       480
     gcaatatttc gaaccaaatt aacgcattac taaaagacac aaacataaga tttgcttatc       540
     agacacgaca taacctttcg tcacaattaa aatctagtaa aacttatttc ccacttttct       600
     cgaacccagg aatatacaaa attacatgta gcaactgcag taaattttat ataggccaga       660
     caggcagaaa tttcaatatc aggtaccggg agcacaccag acaaagcaca aataacccat       720
     ctacttttta ccaacattta aaaacagaaa agcacacagc ggataatata gaacaggcag       780
     tcgaaatttt acatgtaaca cctaaaggac aagttatgga cattctagaa gaaatcgaaa       840
     tatatttaca ctcactacac caccactctg aaatactaaa tgaacaagtc gacttaaaac       900
     acaaaaacta catagaaaat tttattgata tcgtacacca agaaaatggg taaaaatttt       960
     agaccatcat agattacaca cgaacgaaat ttcagtagca aagattaata aatttatgat      1020
     acaaagatca cacatgtcaa tgacgattcg gctaagataa caaaatttct cgacatatgc      1080
     agagacatac attaaccaac ctctcaaata ccggtagcaa agattatcgt aataataaac      1140
     aaacagtatg taaccatatt acatctctgg ttatcaaaaa gctgtcacat cacaacgtaa      1200
     atgatgtcat cagaaatatt gcaataatta aaattcaaaa caacgtaaat gataagtcat      1260
     cagaaatatt gcaataatta aaattcaaag caataaataa atgactgaca gcaataaaac      1320
     catcgatgta tatggatgtc aggaccaaca gacgtatgta atatttcgta atagtattta      1380
     caattacgat aatcataaaa ttgatgtatt tataatgtaa catttttcgc agatcacctg      1440
     acgatggcgc taaaagccga aataggccta tagtgtaata aaaataatta tatttaaagc      1500
     agcatttagg atttattgca taatgtcttt aaataattta tagtcctgca g               1551
//
ID   Penelope-91_LMi repbase;    DNA;    INV; 2596 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-91_LMi.
XX
NM   Penelope-91_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2596
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 141-141 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 2596 BP; 969 A; 520 C; 387 G; 720 T; 0 other;
     aagatgtatt aactccaaac tgtctgacca taaagctgta atagtgaaga gcagataaaa        60
     gtgattgtgc tgtagtaatg tatgaaaaag aatatattga gaaaaccttg gattttttca       120
     agtgtaataa cataattgag ctaaattttg actccacctc taaattccag gctaaaatta       180
     agaaaaccta aagaattgca atttcctact aactgaatgg gaagttcggg actgcattac       240
     tatgaacccc atcacacctc gtctccgctc acaacctaag acccataaaa aaaagctctg       300
     tcctattagg ccaattgtca actccaggaa cagcctttca tacagattaa ataacaaatt       360
     gctaactctt ttaaacacct attacacctt tgaaagcagc ttttccatca aaaacacata       420
     tgaactcatt gacaaaatca aagatgtgca cattccaatt actgccagat ttgcatcact       480
     tgacattgta aacctttata ctaacatccc tatagaggac accataaata taatcaggaa       540
     taacctactg aaacacaaga aactgagcat ggcagagacc tgtgaattca ttgaattgct       600
     cacattggta ctgtcataca attacttcag ttttaataac aaaatataca aacagaatga       660
     cgggttagca atgggtagct gcttagctgg gaaattggca gatatttaca ttactcattt       720
     agaacaaaca ttctttagtt ccaatagtga tatgcacagc aaaattattt actataaaag       780
     atatgtggat gatacaatta ttctttttga tggcaccaaa gatgaaattg acagcctagc       840
     aacaaaattg agtagcatgc ataaaaatat acatttcact gttgagcatg aaaccaatga       900
     cagcatcaac ttccttgact taaaaatatc cagaaaagat cacaaacata attttgaaat       960
     ccataggaag aaaacagcca ctgatgtgtg tatcaacagc tcatcttgcc atccaaatca      1020
     gcataagatg gcatatttca gatccacatt gaatcgcctg cataaaatcc ctctggaacc      1080
     aaatcaacag cttaaggaaa tcaatatcat aaaatccata gcttcaaata atggatataa      1140
     cccccacatg attgaaaaac tatcacacaa aatcagaaat acttcaaaca ataaagctgc      1200
     acaccagacc cccatgcaaa tatcacaaat tgcagaacaa aacagcagaa aatatgttgc      1260
     actgccattt ctaggcagca tttcctacaa aataagtaat ctcttcaaaa acacaaacat      1320
     aaagataagc ttccacacaa acaacagtcc tccatacaaa aggtcaggca tatataaact      1380
     cagctgtcaa agttgcccct cctactatgt aggacaaact gggagaagct ttgacgttcg      1440
     ttttaaagaa catttagatg ctatacgcct aggaaaccca tcaaaatctg catttgccat      1500
     gcacataact cacagcaggc ataaaataaa aagcattgag gatcacatca aaatactgca      1560
     ttatgcagat aaaggcagcc gtatgaattt acttgaagaa atagaggttt atatacataa      1620
     acataaatca ccacaacatc tcctcaatga acaaacagag ttgccaatgc agcctttcta      1680
     caaaatttca ctcagctcct ttcgaattta caacataaat aataaacaat gctacttttg      1740
     ccacatgcag taatgtaata taaacatgaa ataagacaat agcccactca ggtgcacaat      1800
     cattaaatat atctggcctt caattaaaaa cataatatac actgtggtaa cacacaaata      1860
     tgtacactta tttatcactc ctcacattac tctatgtata ccacagcctg tgctatatcg      1920
     ctaagtaaaa ttactttaag aaactgtaaa tacagctcta tgtaattata gcctatgtca      1980
     ctgaatgtac aattcacatg tataacgttt attctgtgta aaataattta cgtctctcct      2040
     ttgtaaaata cgtcaatgtc aaatcaatgt acatatcttt gatagaaaac atctttgaca      2100
     gtgttatgtt ggcattatca ccatctgtgt attcaatgtg gcgaaaacat tttgtttgtg      2160
     tgtgtgctta tgtgtggtta atcgcgctat gttcctccat ataagtgttt caaaaagtgc      2220
     ttattgcagc aacagctgca gtaatcagcg acacaaccta atggaaccga cttttcgacg      2280
     taagtaaata aataacaaga aaaattctat cataaaagtt tgttcacaat atttgtcggt      2340
     atcatgagtc acatttacgc tcgagaaagt cattacaatc aggttttgta ttgtagggca      2400
     ccacacaacc aaagactttt cgccacaaga aaaattatct gcataaaaga aaaatgtaag      2460
     tgacatttgt gtggacgtga acagccgtct gatgatgaac tgaaaggttc gaaaccggca      2520
     acggcgctat ttagttaata aatagcataa tcaaaagtgg ttggttgctg tcttctttat      2580
     tataagaatc accctg                                                      2596
//
ID   Penelope-92_LMi repbase;    DNA;    INV; 2267 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-92_LMi.
XX
NM   Penelope-92_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2267
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 142-142 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 2267 BP; 955 A; 460 C; 265 G; 585 T; 2 other;
     acactgatta catacacaaa gtcctagcct tctttaataa taacaaaatt actagaatag        60
     catacaatcc aggcaacatc tcagcaatga cccaaaaacc tatcaaacgt tgtgatggtt       120
     tttttttatg actatgagaa aagatcatgc attgtcatga atccacatac cccaaaatta       180
     cgtgcacaac caaagacaca taagtcttta attcacatta gaccgatagt taattcaata       240
     aactgcccta cataactttt aaagaagaaa cttgataaaa tgctttaaaa aaattatata       300
     tagagcaaaa tatacacaat caaaactcaa gaacactaga cactcaagac aggcaaatcc       360
     cagctactgc taaatctcat ttgatatcag caatttatac accaatataa cagtgcaagt       420
     aacaataaaa cttatcaaag aaaatttact ataattcaga aaaacaccaa ttactgcaac       480
     acatgaaatt atacatctct tagaaacgac actttctcaa aattattttg aagttaacga       540
     cagaatctac tctcagacag acggtgtagc tatgggaaat accatggcag gtacaatcgc       600
     ggatatctac ctcaacagct tggaagaaac attcttcact ttcagagacc agataataga       660
     tacgatcaca tattattgta gttacataga tgacaccttt atgttaactg atggtgatca       720
     cactgacagt aatatcattc acgaggctct aaacagttta caccctacaa ctgaattcac       780
     cgtagaaatg gaaacatata atactataaa ctacttgcat cttaaaaatt gataatcaac       840
     ttatatttga catctgtcgc aaatctatga catcagacaa aataattaat gccaactcat       900
     gctaccccaa cacataaaaa cttgcatact ttcacaccat gatcaacagt ttgcataacc       960
     taccactaga aaaaatcatc caatacagat agaactaaaa acacgtcaat acatagccca      1020
     tagaaataat ttggacccta acattgtcac aaaattatac aataaacaca aaacatccaa      1080
     atacaacaca acagacaatt acataggatt aaacaaagaa acactaacta aacagaaamc      1140
     gaagtacata cccaccgcct atttaggacg aatctccaac aaaattaatg cactttttaa      1200
     agccaccaac atacaattag cattccgtac caccaacaac cttaagttga aactcagatc      1260
     aaataacaca aatacatcaa tatacactaa cccaggaata tataagatca catgccaaga      1320
     ttgtaactgt ttttacatag gccaaactgg aagaaatttt aacataagat ttaaggaaca      1380
     cataagagat agtgaaaata accagtcaag tttcttcctc cacctaaaaa atcaccatca      1440
     cactgtaagc gaaattgaga atgcattaca agtcctacat aaaatcccaa aaggtcctat      1500
     tatgaccatt cttgaggagc ttgaaattta tatacatatg aaaaaccaac cccaagaaat      1560
     tctgaatgaa caaacagagc ttaaacacca acaatacatt aaaaacttta ttgaaattct      1620
     cataaaagaa aaaggctaaa attacgaagc cattgatcaa ccaaagatcg cccttatcaa      1680
     aatctctaag tcattaaata aaacagcaac ttagacaaat aataacactg ctatatcaac      1740
     aagcgaaaaa tacgaaatta tagcaccaaa aaactttaga aatacgataa aagwttgcac      1800
     atagcattac acaacagcaa caacatctac ttttcgccga ttttacgacg tttatatacg      1860
     atatattaat tgcaaaatct gtgcacttaa acgtaatgca acaaccagag atcgcaacta      1920
     caactgatag cgataaaaag atcatctttg tcaccatcaa aagataatat gtaaacatat      1980
     atcatccgaa ctgtcaaacg taatttaaaa tattttaaaa attttataac accagaagac      2040
     agtcagattc gatgatatat gcacgtcatt ccatctagac gtaagtaaaa aacctttgtt      2100
     attactttaa gaataagatt tataattaca actacgaaaa ctatgtaaaa attattacct      2160
     atatctgcag gtcacttgaa aatggcatta atgcgccgaa acagtctgtt gtgacttaat      2220
     aaaaatatct aaacttagca gcaaattgga atttctttag taaaatg                    2267
//
ID   Penelope-93_LMi repbase;    DNA;    INV; 2834 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-93_LMi.
XX
NM   Penelope-93_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2834
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 143-143 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2834 BP; 1192 A; 510 C; 372 G; 758 T; 2 other;
     tatgtaatgt ttcccattta cacacgtaaa ttactccaat gtatattagt attaagattg        60
     ttgcaaaccc tacagtaata ctacctgtca agaagtatgc tgcaaatacg acaagaaatc       120
     aagaacaaac tctattacaa aatggacttg aatcaagaca tgtatctttc acatttagat       180
     attagtatta gtgttagacc aattttattt gattacgtta caaaatttat agacagctgt       240
     gtacatctta ctagccaaaa cgtacgtttt atacataagg aaaagttcaa aatctcataa       300
     acaaacaata tcctcaagaa agatcaccgt taacacacga gcctccattc gaattttata       360
     agaaaacaat aaatttaact gatactgtgt tcaccaaaga tgaacaaatt tcgccagaga       420
     aatgcttaat acataaaact gaacaaaaat tccacatcag aaccataaaa cagcttatag       480
     ctaaaactga agtaccaatt aatgtaaaac agcaaaatgg tatcgccttt aagacagcca       540
     atgcaatagg aattataaac gtaataatca tagaaatatg atacaaagac agtttgacat       600
     tacgccaaat taccagataa aaatgcaatg acaataaagg cagacaaagg taacagtcta       660
     gtcttactaa aacgcagtga ctacataaaa aaagtaaatg actttttgac agaaaataac       720
     atcatacaga tcaatagaga tcccactaat agctatacac cactaacaag aaaatctgtt       780
     aaagaatgta gaaccatcct gtcttactac gaaaaaaaga acatgtttaa tcatgaatct       840
     tagaacacct acattaccag gatatcctaa gatatacaaa atattagttc cgattcgtct       900
     tatagtcgat ggtataaata gtcccacata tgtactcgcc aaaaaagtac acaaaattcc       960
     agaggaacta tacactttca agaaacaata cacaatgaaa attccagatc gttaccgaaa      1020
     gaaataaaag acatcaaaat taaaaataat ggcaaatttc tctcctttga catctcaaac      1080
     ctatatataa atatttcaat agagagaata attgttgtaa tagaagacaa tttagtatgt      1140
     cataagaaaa ccatctaagc agatgtaaat gaaattagca cacttctaaa tttaattcta      1200
     aagaaaatta ctttctgttt aaggatatat tttatactca aacagatggt gtagcaaagg      1260
     gatgcagcat tgcagggcta atagctgaca ttttcttaaa caatttggaa gaaaaattct      1320
     ttcacatagc aaacccaata acttctaaaa tcagatacta ttaccgttat gttgatgaca      1380
     ctttgatgtt gattgacgga aataatgacg acattcagca aatacatgaa gccctcaaca      1440
     gtctacaccc taaaataaaa ttcacwatgg aattagaaag caataatgcc ataaactact      1500
     tagacctaac cataaaaaat gttaattaca cacataaatt ccagaattac caaaagccaa      1560
     caacaacaga taacataaat tctaattcgt gtcatccaag atcacgaaac gattttgacc      1620
     ctaaaatagt caattacata tataataaac acactaaacc catagaacca atcactcgta      1680
     aagaaatcac actatctaga gaaacaccta aaaaagaaaa atgcgtatat attccgacca      1740
     cttatctagg aacaatatct cacaaaatta ataaaataat gaaacacact aacataaaat      1800
     tcgcatatca aactcggcat aatcttagaa ccctactgca ctcagaacaa gtaaaaccat      1860
     ccacatattt aaatcccgga atttataaaa ttcagtgtaa gcaatgcgaa aaattttata      1920
     taggtcagac tggaagaagc ttcataattc gttttcgaga gcatgttcgt aatagcgaaa      1980
     gcaaccagtc gactttcttc catcacttga agcaagaaca acacatagca gacaatatag      2040
     agcaggccat ggaaatttta catatcacgc aaaakggagc aataatgaac gttcttgaag      2100
     aggttgaaat ttatttacac acgcaagtta accctgaaca aattttaaat gaacaaatcg      2160
     agatgaagca caagcgttac ttggaaaatt tcattagtac cattcttcca aagagataga      2220
     cggaatttac aaatacgtca gagattttat tgtcacgaaa ttaaaagtaa tcactggaaa      2280
     gcatataatt attacgatcc ataaaaaccc aaaaattaca ccaaaattaa ttccacaaaa      2340
     taatatatgg ttaatcattt acatactagt aatgaaacat cctattgaca taccaataag      2400
     accagatatg ctctatataa tagcaaagaa ataattgcat tgtaaacttg taatatcgct      2460
     gacatatctg tcaaaatagc tgtcaaacat cgacaacata agaattattt taaaaaaaaa      2520
     ttatatatac agctatataa gagctataac aacaacagtt cttttacata tgtaaataag      2580
     aacctataca tataagagaa gcagcgatct tacaagggta agaagagcta ccaatgtatg      2640
     tataaagtac aattatcttc ttaaattaaa tagtataccc acctttgtat tttacagtac      2700
     acctgacgat ggcattcacg ccgaaacagg cctgtcgtat taaataattt aataaaaagc      2760
     agcgtctttg gtatcaataa tttacaatgt ctctaaatga catatagacg cagcgggccc      2820
     agaagattat aaat                                                        2834
//
ID   Penelope-94N1_LMi repbase;    DNA;    INV; 271 BP.
XX
AC   .
XX
DT   21-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Nonautonomous; non-autonomous;
KW   Penelope-94N1_LMi.
XX
NM   Penelope-94N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-271
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 144-144 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 271 BP; 85 A; 58 C; 47 G; 81 T; 0 other;
     tttaataaga ggttttcagc caagatcgct ttcttctttt aattacatga ccggtttcgg        60
     cgtgctagac gccatcttca gacctgtcgt aattttttac atcactgcta taacaacaat       120
     ttctaacata gcagtgatgt aaaaaattac gacaggtctg aagatggcgt ctagcacgcc       180
     gaaaccggtc atataattaa aagaagaaag cgatcttggc tgaaaacctc ttattaaaca       240
     attctagatc gccccaacaa tgtgttcctt a                                      271
//
ID   Penelope-94_LMi repbase;    DNA;    INV; 2497 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-94_LMi.
XX
NM   Penelope-94_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2497
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 145-145 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 2497 BP; 927 A; 449 C; 339 G; 780 T; 2 other;
     atcactttag twtttacagg aaacctgkta tcactgatca aatcatcaat gctcaatcat        60
     gccaccctat aaagtacaaa aatgcctatt ttaattcaat gatacacaga tagaattgcc       120
     cctcacagat caagaggtta accaagagtt atccacactt agatacataa gctagtaaaa       180
     atggatatca accaaacata gttgacagat tatacagcaa aataaaaaag aaaatagttc       240
     aagcagacaa taatggccaa aagcctcaaa atctaaatga taataaggag acccacaaaa       300
     aatacatttc agttccctac aatggcagaa tttcagacaa aatagaaaga cagtttagaa       360
     aaactaatgt gactctagct tttaatgtat cacatacttt aaaaagcaga ttacgacaca       420
     aaattggtag tcaaacggac aaatataaag gtaacggggt atataaatta gaatgtggtg       480
     attgtgacaa cttttatatt ggacagactg gtagaacatt tttcaccagg tttaaagaac       540
     acaccagtac acataataaa actgcatttg gggaccacat aaggcacaca cagcacaagg       600
     ttaaagacat gcaaaatagt cttaaaatct tacataaaat acccaaaggc aaaaagttaa       660
     acattttgga aaacatacaa ataattagtc acaagaaaaa atatcccaac ttaatcctaa       720
     atgaccaaac tgaattccaa gaccataatt tttacagtat ttttgaaaag gtcatataag       780
     gacacggtaa cctaactcgg tacctctcat gtttgccaaa aaataacacc aacatagcca       840
     ctattttatt tcaaactctc ttatcaacat tttagatacc catcccatct aacctttgta       900
     ctactgtagt aaacttttat actagtacat aagtattttt atacattgac tgccctatat       960
     tcaacccacc agttgtaata caccttacat acggtcctct gcatcccatg ctaaatgcgt      1020
     tcatgacctg aacatacaca ataggatgcc tggtgacaca tacaaattct acactggcat      1080
     tttaacaatt atgatgcagc cttcagcctt ctacatatac tttaatatat ataagaggta      1140
     accgtttctc ttagccctct gactattgta aattttatac tataatataa attttttata      1200
     aattgaccac tgtaatttta taatgaaaaa agttatatag taacggccca gtttcaactt      1260
     accagtatat tactagattc ttaggtacca accccctgac tattataaat cttatactat      1320
     aacatgaagt tctttataga ttgactaatg taaaacttat tatataacat gagtacattt      1380
     ttatacatta actgcccatg tccaacatac catttattac tatatcttta tgtatcagtc      1440
     cttgaacaac ctaggctatg tacattcatg acacggactt gcacagtaac atgcggagtg      1500
     ccacgtacat gttctgtaca aggcaatttt taagaattat aatgcaactt tgcaactttt      1560
     tatatatact ttgacatata taatagaaga cctttttaca tagccctctg actactagaa      1620
     attttataat attaacatgg atacattctt acacattgac tacctatatt caacccacta      1680
     tcatactaat atacctgtac gcaccagtcc ttgcaaacta tactacatgc attcataaca      1740
     cgaacttaaa aaaatatatc tgttgacatg tacaatttct gtataagata atttagtaag      1800
     tgtaatatac tttctttcaa ccatctataa atattttaga tattaatata tatgtataaa      1860
     ttgtaaaaaa attgtaacat ttctgtacat cacaataggt aactgacata gcgccttaca      1920
     atctatggtg cttaatatag taatttatac aaattgtata tatatgacat tggatgtaat      1980
     ttgagaaaat gtactacatg taatctttta tatgtcaatg tatatataaa aaaaaaagac      2040
     gaccacaaag ggcagagacc attgtataaa tgtgcatgta gcatctttgt atatagtttt      2100
     cccgcctaac agttagtgtt atactgtact tcaattaata ttgaacttag actttgaagt      2160
     acctcgcttc agaaccattg gaagatggat gtatatattt tatttgtgac tagaaatttt      2220
     atgtttggtg acgcctcaac ctggatgtac tcttttagta tgtaaaaaat gttgtgaagt      2280
     tatgtaaaat acgacaggta tgtaaccatg taattgtata taggtagtgt cttggcaatc      2340
     atgtatacag atcacttgtt aaactttgta taataggtct gaagatggcg tcgagcacgc      2400
     cgaaaccggt aacataataa atgaaaaatg cgatcttggc tgcaaaatca ttattaaaca      2460
     attatagatc gccccattga acaatgagtt ccttata                               2497
//
ID   Penelope-95_LMi repbase;    DNA;    INV; 2404 BP.
XX
AC   .
XX
DT   20-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-95_LMi.
XX
NM   Penelope-95_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2404
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 146-146 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2404 BP; 708 A; 460 C; 391 G; 841 T; 4 other;
     agatatgtcg acgatacatt gcgctcatca aaggtaatga cagcgacaca gacggaatag        60
     tgaacaaatt caatgactac aaaatcactt tcactgttga aaaaagtgtg gatggcaata       120
     tcaactttct agatcttacc ataaagaatg acaatggtaa catgcattca gcatctttag       180
     gaaaccaact tgtaccgact ccattattaa ttacaattca ttcatcccga ctcacataaa       240
     agagcgtact ttcaatttgc cttaatagat gtttaattta tgtttgtcca aagcagatca       300
     tgacgctgag ctcagccata cggtacattg ccaagaataa caattatcca tcgactatgt       360
     tactaatatt tacaaaaaga ttgctaaaaa atatgaagaa aacaatacaa atcaccaact       420
     aattcagtca gtttccccca agaaatatgt agttttacct tattatggaa ccatcagctc       480
     cagaattgct gccattttta gaaagcaaaa ttcaattgtt tctttcacca cagaaaatag       540
     tttaggatgg cttttgatta atagtattca caaaacaaat ttcttacatg aatcaggggt       600
     atataaaatt ttatgtgctg aatgcaatgc tttttatgtc ggacagacag gtagacgact       660
     ggaaactagg tttcgtgagc atgtggcgtt ggacaggaaa gatattgcag ataaatcaaa       720
     tttcgccgca catctggtga caacaggaca cgcaccccct gatctaactt cacaactaaa       780
     actcttgcat cgggggtcaa agggcagata tctggatctc cttgaggaga tggaaatatt       840
     tgcccaccaa aaggtgcatg gcgcattatg ctcaatgagc agaccctgac aaaaagtgca       900
     cacttttggg aattctttac atcatggctg aacgccaaat aaaagggttc cgttcattgt       960
     gtttcatctt aacatgtaca atgtctggtc cttatatctc cacacgccat atgcttacaa      1020
     tacgagtaca ttccccacac ttcatctaca ttgagtgata tcagctttct ttcgtcatgg      1080
     tattttagtt tacatctttt aacattaaat cgcaccacct tgtgcgactt taaccttaka      1140
     ttttatgttt tatacatact ttttgctgac taatgtattt ttattgtact gtaactttgt      1200
     caactctatg taacgtgctt caagcacgaa aaatgagtac gttccccakg cgccatctac      1260
     attgaatggt atctgctctc tttcgtcgtg acatttcatt ttactgtttt taacattaaa      1320
     tcgcaccatc ttgtactgct ttgtcctttt attgtgcttt ttgcatgctt tgctgactga      1380
     tgtattgtta tactgtgact ttgtcaatta catgtaacgt gcttcagcac ggaaacgagt      1440
     gcattcccta gacgtcatct gtaatgaatg atatctacgt tcttctacgc gatactttat      1500
     tttatatttt taacattaaa tcatactact ctgtacaact taagcctttt acattatgtt      1560
     ttatgtatac tttgcttctc tgactgatgt aatgtttata ctgtactata actttctcaa      1620
     cgctatgtaa cgtgcttcaa gcacggaaaa cgagatggcg ctgcaattaa ccttcgttac      1680
     tttgtcataa aattaaaatt atatcccctt gttcttcttc gtccttttcg agattttgca      1740
     gcgtagctat aatcaatgta taaagggtac tatccttcat ggtactgctc atttaaattt      1800
     taaaatgttt ttaaattttc ctgttgaaat aacttactac gctagtagta tccataactg      1860
     gcataagacg cttagcatca tactcttgtc ttttacctga tattttatat atttctgtat      1920
     tctgtttttt ttatttttat tggttatcca gcttatatac cttatgtgta aaaatacatt      1980
     ctaattttta ttttgtttgc ataaaaaaat tagtggaaca tctaagtaat agagggcgtt      2040
     aataacaccc atccctacag cgccgctgca tgtcgtttgt aagcagcgcg cttatttcaa      2100
     actttgacac tgcaatttta tgtttgccgt tgcagttaca ttcagggcat tcataatgct      2160
     tggtatgtat gttgtctgta tattatattt gaaattgtat tcmagttcat tttgtatttg      2220
     tttgtaattc catactgatc ttatgatctt gttctatagt ttgaaggaca ctgaagatgg      2280
     tcactatgtg attgaaatcg atctgtgttt ttttaaataa aacattaacg gccaatgctg      2340
     ctmaatacat ctggtgtgtt catcattgtg tggtctgagc acctcgaatg gaatcaaacc      2400
     tcaa                                                                   2404
//
ID   Penelope-96_LMi repbase;    DNA;    INV; 2926 BP.
XX
AC   .
XX
DT   20-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-96_LMi.
XX
NM   Penelope-96_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2926
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 250-250 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(376..1599,1586..2209)
FT                 /product="Penelope-96_LMi_1p"
FT                 /translation="MRNDIAKLPTHKQNTIAVKIINALKAQIQPESNLNNE
FT                 NKIIDDLNKKLKRHKALITRADKGSTVVLVSDDEYVTKTEKFFSDNGIKEI
FT                 ARDPTKKFHAQLKRKIQNSDFLFSDREKKQYTVMNPQTPDARAQIKLHKKD
FT                 KSIRLICNTRQSPNAPLNATLAQRLRTLYTFHELHSLKNTYEFAEKVKDTV
FT                 IPSDSIFASLDVVNLYTNVPVRETIDIIKRNLIRHQKMATGEIVDFIELLE
FT                 LTLSYNFFTFNGKIYHQPEGLAMGNSLAGIMAEIFLNHLENEFFTTNPTIA
FT                 NKILYYYRYVDDAILLVKGDQNDVNDIAQKMSAIHPKIKFTVEHENNGSIN
FT                 YLDITVTREAGRHRFGVYRKPTCADLIINSKSWHPKRVKMAYFRSMANRLL
FT                 KLPLVSSLLTTTKKQQRKNDSTLTSDVEEKKIIYMPMSYKGKVSDIIARQF
FT                 RNTNVRIGFKTNDVTRFRLRHRVNKKSSKFTAAGVYKLKCGDCTKIYVGQT
FT                 GRTFETRFKEHCSLHNNKTAFGEHLVTEKHAVGTINTHLQVLHREPKGRLL
FT                 TTLEEIEIFTHRLQEPGSTLNQQNDFNNSAFFKNFEGLLQPSSWTQHALER
FT                 RPHFPVAGGGSASARTPP"
XX
SQ   Sequence 2926 BP; 1071 A; 605 C; 499 G; 749 T; 2 other;
     gaaataatgt gggtaaaagt agaaattagg gaagctacaa gaacaaaatg tattaaacgg        60
     gagttatact cattgcactt aaaaatagct aaaatgttat cccctatgca gtttgacaac       120
     ttacgctcat ttttgacgat agagtagaca ctgagagggc agaagtaatt gcaagacacc       180
     aaaagaagtg tcacatttga taggagggaa gaaagagaaa acggtaattg cctaaataca       240
     cgaattctct gataaacttg taaatttaca gatattctct cacagatgaa gaaatgtctc       300
     ttttgtcaaa ggtttgaact ataatccaaa accaacccga caggaagatg taaagagaat       360
     catagcagag gtcaaatgcg caatgatatt gcaaagctcc ccacacataa acagaatacc       420
     atagcagtca agatcatcaa cgcgttaaaa gcacaaattc agccagaaag taaccttaat       480
     aatgaaaaca agatcataga cgatttaaat aaaaagttaa agaggcacaa agcactaatc       540
     acacgggcag ataaaggcag cactgtagtt cttgtcagcg acgacgagta tgtaactaaa       600
     actgaaaaat tcttctctga taacggkatt aaagaaatag ctagagaccc aacaaaaaag       660
     tttcatgcac aactaaaacg aaaaatccaa aattctgact ttctcttttc agacagagag       720
     aaaaagcaat atacagtcat gaatccgcaa acaccagacg cccgcgcaca gataaagctg       780
     cataaaaaag acaaatccat caggctgata tgtaacacaa gacaaagtcc taacgctcca       840
     ttaaatgcca ctttagcaca aaggttaaga acgctataca catttcatga actgcatagt       900
     ctaaaaaata cgtacgaatt tgcggagaaa gtgaaggaca cagtcatccc atctgattcc       960
     atatttgcat ccctagatgt agtgaattta tatactaacg tgcctgtccg tgaaacaata      1020
     gatataatca agcgcaatct tataagacac caaaaaatgg ctacaggaga aatagttgac      1080
     tttatagaac tcctagaact aacgctctcc tataactttt tcacattcaa cggcaagata      1140
     tatcaccaac ctgaaggact tgccatggga aactccctag caggcattat ggccgagatc      1200
     ttccttaatc atttagagaa cgaatttttc accactaacc ctacaatagc caacaaaatt      1260
     ctctattatt accgttatgt agatgatgcc attttattag ttaaaggaga ccaaaatgat      1320
     gttaatgaca ttgcgcaaaa aatgagtgct attcatccaa aaatcaagtt cacagtcgag      1380
     cacgaaaata atggatccat caactacctc gacattacag ttacaagaga agcgggtaga      1440
     catcgttttg gtgtatatag gaaacctact tgtgcagacc ttatcatcaa ttcmaaatct      1500
     tggcatccga aaagagtaaa gatggcatat tttcgttcaa tggctaacag attattgaaa      1560
     ctgccattgg tttctagctt attaacaaca acgaaaaaat gacagtacgc tgacaagtga      1620
     cgtagaagaa aagaaaatca tctacatgcc aatgagctac aaaggaaagg tttcagacat      1680
     cattgctagg caatttcgaa acaccaacgt acgaatagga tttaagacca acgatgtcac      1740
     tcgatttaga ctgagacacc gcgtgaacaa aaaatcctca aaattcacgg cagcaggcgt      1800
     ctataaactc aaatgtggag actgtacaaa aatctacgta ggtcagacag gcagaacgtt      1860
     cgaaacacgt tttaaagagc actgctctct tcataataat aaaacagcat ttggagagca      1920
     tttagtgaca gaaaagcacg cggttggaac aattaatacc catttacaag tgctacatag      1980
     ggaaccaaaa ggacgcctcc taacgacact ggaagaaata gaaattttca cacaccggct      2040
     tcaagaacct ggaagtacac tcaaccaaca aaatgatttt aataacagcg cattttttaa      2100
     aaactttgaa ggcctcttgc aaccttcgtc ctggacgcag cacgccttgg agcggcggcc      2160
     ccactttccg gtggctggcg gcggcagcgc gtcggcccgg acaccgccct agcagcaggt      2220
     cggcgtgcag actggcttcc gaacgtacaa gaaaaactgc gcgccgcaca acgccaccaa      2280
     gtagcgacag aggcaactaa cgcccatacc atgctgtttt atataaattt ttataatttt      2340
     tatattttaa cattttaatg ataattttaa caaactgacg tttaaaaatt ttaaagtatg      2400
     acatttgtaa ttttatacat ctctgtttta caccttcaat gttttaaaac accgtatgca      2460
     tgttttaatt atcttaccat atttttatac ttatatcaca tacagtttta taatttttat      2520
     gtctggatat attcaagaac cccactttta ggaaaatatt tatataacaa acaattgttc      2580
     agtataagcc tagttattag ggctcaagcc atccactaca atccctccac cccccccccc      2640
     acctccctcc ccaccaccaa attataagtg cctacatcga actgtaaaac tcagtaccaa      2700
     ttagtactca gccagacgag ttgcggacgc aactataagg taaagaaaaa tctatccatt      2760
     tatgtataaa ttaactattg ttcaattaac ccttagtaag tttatcaaat tgtacattgc      2820
     tattttactt ttgtttttta gatctgaaga tgatccaagt gatcgaaaca tgtaattaaa      2880
     caattttatt gcaactgttg acggaaataa acacatttaa aataac                     2926
//
ID   Penelope-97_LMi repbase;    DNA;    INV; 3366 BP.
XX
AC   .
XX
DT   23-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-97_LMi.
XX
NM   Penelope-97_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3366
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 251-251 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(409..468,458..1600,1557..1679,1666..1788,
FT                 1808..1999,2003..2125,2094..2285)
FT                 /product="Penelope-97_LMi_1p"
FT                 /translation="MKNLYTNIPLKLLGLLEKIRRKFVNHKILNYDEISEI
FT                 IELLETSLKFNYFSFNKHICFQKDGLAMGNSLAGTIADIFVNXIEILFFRN
FT                 NPHIFGKNVYYKRYVDDTLLLFNGSEEELNDRLNHMHPNLIFTIEHEQHKT
FT                 INFLDLTIANNEGQHTFSVYRKPTTTDAIIHAKSCHPNKYKKAFFCSMLNR
FT                 VNKLPLSQGQKQREISILKQIATNNGYNAKLVDNLYQKILLQQPQPNTKRY
FT                 FSKMIYMGNISDRINRLFKNTDISLAFSTTNTLSQRLKHKIGNSEDPYSKS
FT                 GVYKLTCRDCQKVYIGQTGRSFKTRFKEHMTGTSRNKSVFGQHLTNDKHSE
FT                 CDLEHDMKILHIAPKGYLLDTLEEXEIFIHHKNSPSCLLNEFLEFRDKTYF
FT                 ELFENIINSVIKHILNCLKISFETWDTVSPFMLQLLRVAYVHLKSXTWNXV
FT                 HGNLYMKSFNFKQIAHLYILVCFPFIXFQNDLHIMFLKSPSINYYIMTSHF
FT                 LFRIFAKPPYCLIFWHPGYFIMILVVSTVIKISFGVLCIFTITLDPSTLAF
FT                 MLHLGSISAVLPSVMAIFVFYFNTCSCTTIKSILLFIVFYSNLSYCSLYFT
FT                 HNSNNFYYRDQSYCSFMTLFRAAILSLFWHFLLFYYNTSSFYYYEIYLTIH
FT                 SIL"
XX
SQ   Sequence 3366 BP; 1116 A; 649 C; 456 G; 1139 T; 6 other;
     atcataattg ctgaagacga ttacatttct aaaattacaa catttttcaa gaaaataata        60
     tcaatcaaat taataaggac ccacttccaa aatttcaaaa gaaaattaga aaacttattg       120
     atgaaaacgt taatcttttt tcaccaaaag agaaacaaca attaaaagta atgaatccac       180
     agatgccaaa acttagagct caggttaagc ttcacaaaca gaattggccg tcgactggta       240
     gtgaacaata ttgactgtcc gtcatattac ctaaacaaga aactaaatga aattttgaaa       300
     gagttctaca tttttgaaaa caatttctcc agaaaaaaca gctatgaact tgtgtcaagt       360
     atctatgagg tccaaattcc cgtaggagcg cgtttcgctt cattagatat gaagaattta       420
     tatacaaata ttccactgaa actattagga ttattagaga aaattcgtta accataaaat       480
     actcaattat gatgaaatca gtgaaatcat cgagctttta gagacatctt taaaattcaa       540
     ctacttctct ttcaataaac atatatgttt tcaaaaggac ggcctcgcta tgggtaattc       600
     cctagcaggt actattgctg acatatttgt caaccamata gaaattttat tttttaggaa       660
     caatccacac atttttggaa aaaatgttta ctacaaacgt tatgttgatg acactcttct       720
     tctatttaat ggctctgagg aagaattaaa tgatcgttta aaccatatgc accccaacct       780
     catttttaca attgaacatg aacaacataa gaccattaat tttttagact tgacaatcgc       840
     caataatgaa ggacagcata ccttttctgt atacaggaaa cctacaacaa cagatgccat       900
     tattcatgct aaatcatgtc atccaaacaa atataaaaaa gccttctttt gctcaatgtt       960
     aaaccgagtg aacaaactac cgctatcgca aggacaaaaa caaagagaaa tttccatcct      1020
     taaacaaatt gctactaaca atggatataa tgcaaagttg gtcgacaatc tgtaccaaaa      1080
     gatactgttg caacaaccac aaccaaacac gaaaaggtat ttctctaaaa tgatctacat      1140
     gggtaatatt tccgatagga ttaataggct atttaaaaat actgatattt cattagcatt      1200
     ctctaccaca aatactctgt cccaaagact aaaacacaaa attggtaata gcgaagaccc      1260
     atattcgaaa tctggagtgt ataaactgac atgtagagac tgccaaaaag tatatattgg      1320
     acaaactggt agaagtttta agaccagatt caaagaacac atgacaggca catcacgtaa      1380
     taaatcmgta tttgggcaac acctaaccaa tgacaaacat tcagaatgtg atttagagca      1440
     tgacatgaaa atcctacata ttgccccaaa aggttatctc ttagatactc tcgaagaamt      1500
     ggagatcttt attcaccata aaaatagtcc atcatgtctt cttaatgaat tcttagaatt      1560
     ccgtgataaa acatattttg aactgtttga aaatatcatt tgaaacctgg gatactgttt      1620
     ctccttttat gttacaactt cttagagtgg cttatgtaca tttaaaatca wgtacatggt      1680
     aatttataca tgaaatcttt taatttcaaa caaattgcac acttatacat actggtatgt      1740
     ttccctttta ttcakttcca gaatgacctt catattatgt tcctgaagtg atatatacaa      1800
     ataataatct ccatctatta attactatat aatgactagc cactttctct ttagaatatt      1860
     tgccaaaccg ccatattgtc ttatattttg gcaccctgga tatttcatta tgatactagt      1920
     tgtttctact gttattaaaa tttcttttgg tgttctttgt atttttacca taacactaga      1980
     cccctctaca ttagccttct aaatgttaca tcttggctcc atwtccgctg tattgccttc      2040
     tgttatggca atctttgtat tttattttaa tacttgtagt tgtactacta taaaatctat      2100
     cttattgttc attgtatttt actcataata gtaataattt ttactacagg gaccaaagtt      2160
     actgttcctt catgactctc ttcagagccg ccatattatc tctgttttgg cactttttgc      2220
     tattttatta caatactagt agtttctact actatgaaat ctatctcact atccatagta      2280
     ttttatgatc atactagtag ttcctactac cattaatgga accttttatt gttcatttta      2340
     ttctctttaa gacacattgt ataacgtttt attagtattt taccaaggga caaagatatg      2400
     gtaactttta tttccttcta atatacatca ctgtcatttt cataatttta acgtttttcg      2460
     aatgccatgc actcgaaaaa tacgtcttaa cgaccttcac tctgcacatt gatgtatttg      2520
     cataaccatg acgacagttg gcgaccttct acacacatct ttgactacca acccaccgtt      2580
     ttaacttctg tgttggcatg acaacggcgt caccaattgc taacatcctt gaccttccct      2640
     ttaccatggt aacggcgtca tatctaacga cccactagat ggcattgcac catgaaaaat      2700
     atgacttaat ttataattat gcagtatttt aatataataa gattaggtct gcatatgttt      2760
     tagccacatt agcatatata ttgattacaa tagcctttcg tttgcagact aataccattg      2820
     attaaatctc acctgctgat tatattcgtt atgcattttt taatacacag catttttata      2880
     ttatccctct tttttattat acttcttaat tctatttata tatttttatt atcagactat      2940
     gtattaattt atacattact cagaacgtac tctttgtaag ccttttccca ttggctgctg      3000
     ctgacttggc gccaaaatca tacactattt aaccagaggc cttatggcca ctagtcaaca      3060
     gttacctgct ggcagcagaa cagcccagga cagcccagcc cagccgagtg cagcactggc      3120
     cacatgggta aacgccataa acattactct gtatatattt tatgttacat ctaaagtcgt      3180
     acttaggcgt ttttgtaatt atttccatta atccttgcag gctacttgta attccgaaga      3240
     tgacctacat caggtcgaaa ccggttaatt gaaactgtta atttctgcga tcaagactgt      3300
     tttttgtaat attgatcata ccaaatagat cgctgttttt tcctctgaca atgttgtcaa      3360
     aattaa                                                                 3366
//
ID   Penelope-98_LMi repbase;    DNA;    INV; 1986 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-98_LMi.
XX
NM   Penelope-98_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1986
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 147-147 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1986 BP; 649 A; 365 C; 352 G; 618 T; 2 other;
     tactacagat aagttgatga tacactgtta ctcatcaaag atagtacagg tgacgtagac        60
     gaaatagtaa aaggttttaa tggtctgcat aaaaagattg cttttacagt tgaaataggt       120
     aacaagggct ctataaattt tttggatctt acgatcagca atgacaatgg gagacatgca       180
     tttggtattt ttaggaaacc tacttccact gatgccattg tagattataa ctccaatcat       240
     cacagttcac ataaaaaagc tttcttccac tttgctttca atagaatgtt taggcttcct       300
     ttaaaaaaga cggaccatga gtctgaactt aaataataaa cagattgcaa agaaaaataa       360
     ttatcccatt gaatatgtaa tgaaaattta taacagggtt gctcacaaat acaaagaaaa       420
     caaatcgaac gctcaaaaca aggttgaaaa atccaaaaga tatgtaacgt tgccgtatta       480
     tgggaaaatt agcacaagaa tagcgtcagt tttcaccaaa caaaatattg tggtatcttt       540
     cactactgaa aattccatag ggcgtctttt agtgacgaac atcaataaat tgcacgagtc       600
     aggtgtgtac aaactttcat gtgctgactg tagtgccttc tatgtaggac aaacggggag       660
     acgcttagaa gtgagatatc gtgagcatgt cgcaattgac agaaaagata tagctgctcg       720
     atcaaacttt gccgcacatc tggtaactac aggacacaat cccccagatc tgacatcaca       780
     gctcaaacta ctgcataggg gagaaaaggg cagatacctt gacctccttg aggagatcga       840
     gatattttgc caccaaaaat tgtccaacta cctgctcaat gagcaaacgt atacaaagag       900
     cgcccatttt tgggagttct tcataggttt gctcacacct caacaaaaat aagagacgtt       960
     ttgtacgcct ctgtcacatt gtactagtta gggtttatat tgacgattgc ttcatgctca      1020
     cgatacgaga acgtcagtca taaataacaa agaaccatct tcactagtga acttttcact      1080
     tgaatcttta gtagtctgat atttagcagc aaactgcaat gattttttgg tttcagaaca      1140
     taacacattt ctgataagca accgataagg tgctacatga catatgtcct cccaccctat      1200
     tccgtggaaa cgcagcattt tagcactaca caacgtgcta catttttcaa gcaatagatg      1260
     acgctgccca ttactctgct gagcacttaa aaatactgac caaagaatgc takttttgtt      1320
     attttcttaa tattgtcaat tatgttattt tatccaattt gttttawtta ataatccatc      1380
     tttgtaagga gtgcaattat atgtaaaaac tttacctggt ccacgctcta tcgagagttg      1440
     ttcttttatt gtatccataa cagaaaaatg atagagccaa tatgtttcat ttaattatgt      1500
     caatttattc atattgtaac ttttcttttt tatatacata taaacaatgt aaaccttttg      1560
     agacaataaa gagggcgcta acgacgtcca cacagagccc acctgtggac aaatgtaggc      1620
     agctggctca gtttgacttt gtatgacacc agatagtatc acatgtatct agctatgtgc      1680
     aatggatttg ttagacgtaa atgtcactgt acatttcaca aatatgctgt tttgaacttg      1740
     gtatgtatta attactctta atccttgtac ctattggaga gtttgtaatt tggtattagt      1800
     ttattgattt tgtatatttc tttttgggcc agctgacagc actgaagatg gtttcttgga      1860
     aaaccgaaat cgatttgcct aaataaagca aaagatttta cggctaatgc tgctcctttc      1920
     attattgata aaagtgattt tgtggccgtt gagcacaccc ctccagataa tggaatccaa      1980
     tttaaa                                                                 1986
//
ID   Penelope-99_LMi repbase;    DNA;    INV; 3112 BP.
XX
AC   .
XX
DT   16-JUL-2014 (Rel. 20.01, Created)
DT   20-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-99_LMi.
XX
NM   Penelope-99_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3112
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 252-252 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(268..522,497..748,702..965,985..1260,
FT                 1334..1735,1745..2290)
FT                 /product="Penelope-99_LMi_1p"
FT                 /translation="NLPIPEQIFYDRVINSTAITFDKDETELLEKGLKHNI
FT                 PPLLIIKHQRFNYSKVACDVAKMNSNEQISIGLKINNIIKRISESKSTKEY
FT                 RNQKAHNYVKSDSKLLRNVNKKLSENKALVVKSDKGNSAVVMYESEYINKT
FT                 LEFFHTNNIHEIQMTPHQISGPAKKTXEIFPHTKFQAQLRKLXKSSDFLLS
FT                 DSDVQRCLVMNPSAPKLRLQPKIHKNTCPIRPVVNSRNSPAFLSVESLKTF
FT                 LKIFMHMKRISQLRIHKIYKYQKAKFASMDIVNLYTNIPIHDTIQIIKNNL
FT                 LKHKKLSKAEIYELIALLELILSHNYFTFNNKIYKQADGLLWAAVWQESLQ
FT                 TFTLITYLILYNGTNDEIEKLANALSGIHNNIKFTVDHQVDNEINFLDLTI
FT                 SNVNNKHAFKIYRKPTTTDVVINNTSCHPMQHKMAFFRSALNRIHKIPLSP
FT                 LDEQREIKIIKEIAHRNGYNPDSIDKLNNKIKKKHSPPLTRTDTHICLHPI
FT                 YRKNSYQVANLFRNSGIQISFSTNNKLQQNLIHNIKSNSQCHRKSGIYKLS
FT                 CDNCPQFYIGQTGRSFTTRYREHMDAFRLNHFDKSTFATHLKXNGHSATAI
FT                 EDNLKILHIVNKGKKMNLLEELEIYIHSSNSPHLILNEQVELANKSFLNIF
FT                 NELFTNKNCNSLPPHN"
XX
SQ   Sequence 3112 BP; 1164 A; 636 C; 441 G; 867 T; 4 other;
     gtctatgtct aagtaacacc taattacata aaagtacaca ttgacactcg tcgcaaaaat        60
     tgaatgtcaa aatttaaaat tactatacaa attcaaagat taccttaaca aacaatctag       120
     gctgcacctg gcactaagca ctccctgaat gcaattcaag tacattttaa taaaattaat       180
     gaccaggtag tcaaagaaca actttagttt caactagata taatcagaag ttacttgctc       240
     tcagttccaa caaaagacaa caattagaat ctccccatac ctgagcaaat cttttatgac       300
     agggtcataa actccactgc cattacattt gacaaagatg agactgagtt acttgagaaa       360
     ggcctgaaac acaacattcc accattactc ataataaaac atcaaagatt taattactct       420
     aaagtggcat gtgatgtagc taaaatgaac agtaatgagc agatcagcat tggccttaaa       480
     ataaataaca tcataaaaag aatatcggaa tcaaaaagca cataattatg taaaatctga       540
     ctccaaactg ctcaggaatg tcaataaaaa gctttctgaa aacaaagctt tggttgtgaa       600
     atctgacaaa gggaactcag cagtagttat gtatgaatct gaatatatta acaaaaccct       660
     tgaatttttc cacacaaaca atatacatga aatacaaatg accccacacc aaatttcagg       720
     cccagctaag aaaacttstg aaatcttctg atttcctgtt atctgactct gatgtccaaa       780
     gatgccttgt catgaacccg tcagcaccga agctacgttt gcaaccaaag atacacaaga       840
     atacttgtcc gatacgtcca gtagttaact caagaaacag tcctgcattt ttatcagtag       900
     aaagcttaaa gacattcttg aaaattttta tgcatatgaa amgaatttct caattaagaa       960
     tacattgatc ttatagagat ataaaagata tacaaatacc agaaggccaa atttgcttca      1020
     atggacatag ttaatctgta cactaacatt cctattcatg acaccattca gataattaaa      1080
     aacaatctac taaaacacaa aaagttatcc aaggctgaaa tttatgaact cattgcacta      1140
     ctagaactaa tcctgtcaca taattatttc acatttaaca acaaaattta caagcaagca      1200
     gatggcttgc tatgggcagc agtttggcag gaatccttgc agacatttac attaatcaca      1260
     tagaaaatca gttcttcaaa tcagattgtg tattcaaaga taaaatagtt tattataaaa      1320
     ggtatgtgga tgatacctta tcctgtacaa tggcacaaat gatgagattg aaaaacttgc      1380
     aaatgccctc agtggcatac acaacaacat taaattcact gtagatcatc aggtggataa      1440
     tgaaattaat tttcttgatc tgacaatttc taatgtaaat aacaaacatg ccttcaaaat      1500
     ttacagaaag cccaccacca ctgatgttgt aataaataac acctcctgtc accccatgca      1560
     acacaaaatg gcatttttca gatctgcact taaccgtata cacaaaattc cactcagccc      1620
     actagacgaa caaagagaaa ttaaaattat caaagaaata gctcacagaa atggatacaa      1680
     cccagattca attgacaaac tcaacaacaa aattaaaaag aaacactccc ccccctaggt      1740
     ctgactcaca agaacagata cacacatttg cttgcatccc atttatagga aaaactcata      1800
     tcaagttgct aaccttttcc gaaacagtgg tattcaaata tccttcagta ctaacaataa      1860
     gcttcaacag aacctcatcc acaacatcaa atcaaacagc caatgccacc ggaaatcagg      1920
     tatttataag ctttcatgtg acaattgccc acagttctac attggccaga caggcaggag      1980
     tttcactaca aggtaccgtg aacacatgga tgccttcagg ttaaatcatt ttgataaatc      2040
     caccttcgca acacatctga aagawaatgg tcactctgcc acagccattg aagacaacct      2100
     aaaaatatta catattgtca acaaagggaa gaaaatgaat ctccttgaag agcttgaaat      2160
     ctacatccat agttccaact cgccacatct cattcttaat gaacaggtgg agctagcaaa      2220
     taaatctttt ctgaacatct tcaacgaatt attcacaaac aaaaactgta actcattacc      2280
     ccctcacaac taaacacaga acaaaacaga aacaaccttt attagaaata catcaaaaca      2340
     aaaaagcacc gaaatttata caaatccttt gaaaatcgaa aatatggtaa agaccacttt      2400
     wcactctagt cgaatttatt ggcattgtat ttcataatga ccagtttaca taatctaatt      2460
     tgctagcaac tattctacat gttataaatg acagtgtggc tccacaataa tataactaat      2520
     ctcgcttttg gtatttgtaa catctgatat atctctgtat gtggcatctc tgtacttctg      2580
     tgtgtgcaat atctctgtat atcttgagct aagttctttg accataacat atgcttgaat      2640
     gtaaacatgg cgatgttgtg agtgactact gtcaacagtt ataaagtgta ctgtgtattg      2700
     tgcaaaacct gtgacatggg agtgcaaatt agcattatgt tgctgttact gcattattct      2760
     caactgatat ccatgagaaa tgtacgaaca cgaactggat accctactta tatgtgagta      2820
     cacttatagc cttatcacaa atcactccac cacataccat acttgtttat gtatatgtat      2880
     atctatatga tacttgtact tgtatgtata tctgtatgat aagcacaaag taatttacgt      2940
     tttctttaaa cagtcaacaa cactgaatgt aaacacctga agatgggcac aagcccgaaa      3000
     ccggtagtgt tttaataaac caccaataat tgtgactggt agcggatttt atttccacaa      3060
     cctataagga acagtcacgg agttcttcaa catccataat ggataaaatt ca              3112
//
ID   Penelope-9_CoFl repbase;    DNA;    INV; 2830 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Copidosoma floridanum
DE   genome - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-9_CoFl.
XX
NM   Penelope-9_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2830
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2414-2414 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           784..2409
FT                 /product="Penelope-9_CoFl_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MNRHDYIDKMTMLLADTDTYEEIKNNPTKVLQKKVQE
FT                 QLKYLNDNEFLKYKFHNTQITQTDTQLAKAYGLPKIHKKDIPLRPIISLTN
FT                 SPTYLLSKILYNDLKVCMPKSKFHINNSQDLIHKIKSFKIPDDYVLVSLDV
FT                 TSLFTNVSCDLVLKSLERRVDYIRRASRIPFIDIIYLTKFLFENTYFTFNK
FT                 KFYRQIFGTPMGSPISPFFADLVLEDCVNECWNILKNKHSVEPLFYFSYVD
FT                 DSITCIKEKHIDLVTKIFNSYNKNLKFTYEIEKENQINFLDVTLIKRCNKI
FT                 ITNWYQKESSTNRLLHFESNHTGQQKKNIIYNLIDRAIRLSDSSFHNENVK
FT                 IVRQMLLENGYPKHFINKHIKKRLCKINNDVTEKIPEQLPLNTTIISLPFF
FT                 PNNFDKIQRFLKKFNIQVIPRINKKLNHIVQLGKDTTDTLDNTNVVYEISC
FT                 SDCSAKYTGETKRALKERKREHQNNYKPESVVTLHQISNNHNFEWDNIKIL
FT                 DKEPNYGKRLISEMLHITSNIHNINKKEDVYNLSRTYRSFFNSVRF"
XX
SQ   Sequence 2830 BP; 1101 A; 430 C; 428 G; 871 T; 0 other;
     aaacagtgga aggaattgaa aataaagctt gcagggacct gtccacgaaa cgttttcctg        60
     ctccgctgta agaaacatga catcattcca gcacacatac gatatgctag taagagtttt       120
     ctgaacttat catttaaaag cagtttgtgt aaaaagttgt cttccgattt tgttacaaaa       180
     ctttgcgtgc gattcttaaa attcgaaata aaagatgttt cgattcacat aaagtattta       240
     aggacagcat tacatacact atataacgaa ataacacaat acaaaattga taaaagacaa       300
     ttacatcaat ttttcataag tgtcgacaaa aaatgtttta aaataaaaaa tcatgtcaaa       360
     tttacactta aaaataagtt tgcgcgtttg tactcaaaaa tagaaaccca caagccaata       420
     tttaaaaaca ggcaaaataa atttattaat ttaacacaaa ctatcatacc tgaagatgtt       480
     gcccaaatag tatcacttgg accaggtttc aataaaacaa catcaatttt gaaaaaggga       540
     gacgctattg atatatttaa aaatttagaa tatggtttaa aaaacacgaa aataaatgaa       600
     agcttaaaag aaacagtaag acaaactgtt tgttcaatag ttaactttag cataaaaaat       660
     aaaacacatc aaaatcataa atatttagtc tataatgaaa aaatcaatca aacaacacaa       720
     tttttaaaag agaatcaaca tttaattttt ctaaaatccg acaagggcaa tacctcggta       780
     tgcatgaata gacacgatta catcgacaag atgacgatgc ttctggctga cactgacaca       840
     tacgaagaaa taaagaataa tccaacaaaa gttttacaaa aaaaggtaca agaacaattg       900
     aaatatctca atgacaatga atttttaaaa tataagtttc ataatacaca aattacacaa       960
     acggatacac agttagccaa ggcatatgga ctcccgaaaa tacataaaaa agatattcct      1020
     cttagaccaa ttatttcatt aactaatagt ccaacttact tactttcaaa gatattatat      1080
     aacgacttga aagtatgtat gccaaaatca aaattccata tcaacaatag tcaagatctt      1140
     atacacaaaa ttaaatcttt caagatacca gacgattatg tgttggtgtc cctagacgtt      1200
     acttcattgt tcactaatgt atcgtgtgat ttggttttga aaagccttga gagacgtgta      1260
     gattatattc gtcgtgcgtc aagaatcccg tttattgata ttatatattt aacgaagttt      1320
     ctatttgaaa atacatattt tacctttaat aaaaagtttt atcgacagat atttggtacc      1380
     ccgatggggt caccaatttc tccttttttt gcggacttag ttcttgaaga ctgtgtaaat      1440
     gaatgttgga atattttaaa aaataaacat agtgttgagc cgctcttcta tttttcatac      1500
     gttgacgatt caatcacttg tataaaagaa aagcatattg accttgttac taaaatcttt      1560
     aatagttata acaaaaattt aaaatttaca tatgagattg aaaaagagaa ccaaattaat      1620
     ttcttagatg tgactttaat aaagcgatgc aacaaaatta tcacaaattg gtaccaaaaa      1680
     gaatcatcta caaatagact cttacatttt gaatctaatc atactgggca acaaaagaag      1740
     aatataattt ataatttaat agacagggcc ataagactct ctgacagttc attccataat      1800
     gaaaacgtga aaattgtaag acagatgctg cttgagaatg gctatcctaa gcattttatt      1860
     aataaacata ttaagaaaag actttgtaag atcaataatg atgttacaga gaaaattcca      1920
     gagcaattac ctttaaatac aaccattata agcttaccat tttttccaaa taattttgat      1980
     aagatacaac gttttttaaa aaaattcaat atacaagtaa ttccgagaat aaacaaaaaa      2040
     ttgaatcata ttgtacagtt gggaaaagat actactgata ctttggataa tactaatgtc      2100
     gtatatgaaa tctcatgcag tgactgttca gcaaaatata caggtgaaac gaagagagct      2160
     ttaaaagaga gaaaacgaga acaccaaaac aactacaaac cggaatcggt agttacttta      2220
     caccaaattt ctaataacca taattttgag tgggacaata taaaaatatt agacaaagag      2280
     ccgaattatg gtaaacgttt gatctctgaa atgttacaca ttacctccaa cattcataat      2340
     ataaataaga aagaagatgt ttataattta agtcgcactt atcgaagttt ctttaattct      2400
     gtacgttttt aaagactatg tacgttctta gaattgtata ctgataatgt gatatgtgaa      2460
     ctgagggctc gggtcatcgc actgcgaaac ttgtatatgt ttgggtgtgt gtgtgtttgt      2520
     tataaaagcg gggtacattg cggtgttggg gcctttgcca gtttgacttg cgtgtgagcc      2580
     atttgctcga tacgttaaat aaattgtctt tcacggttta aattaaggta atttatttgt      2640
     cagttctaca ttatatgtat ctgttgtcta tattagtcat tgtaataatt tattattgtt      2700
     aataaagcct gaagaggtcg acacaccagt cgacgaaacg tcgcttaaac taagtgtttt      2760
     catttgcccc agaagatcaa cgaaataaac ttatatatat ataatatgga gggcgagaaa      2820
     gactcaacta                                                             2830
//
ID   Penelope-9_FoCa repbase;    DNA;    INV; 2817 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   19-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   Penelope-like retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-9_FoCa.
XX
NM   Penelope-9_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2817
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the Folsomia candida
RT   genome.";
RL   Repbase Reports 19(12), 2742-2742 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. The sequences 1-197 and 2618-2815
CC   are Penelope LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           128..2644
FT                 /product="Penelope-9_FoCa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MCRKLVNKLNFKNMSSNADQSNYIYNRGWKQLLHKIR
FT                 TLHGGAEVIDVRKLESLHKRKVQIQNNTIFLKRCKNLNLTPKGFKMQHLTK
FT                 QFGPHPLIAKFQTEYEEKLLKTMIKINFQELHQIENDLKKLRISTREKMPQ
FT                 LWGWICELINHTQDSIQTQIKQRHVXKLDALNKESASKIIDQHSNPESPIL
FT                 IQNLSSYKPDENEEKLLKLGLNFSLPHKDIRIPMIDTAATIELRMLDMEIT
FT                 ENVKNDVRTGVTQIMKKFVNKSNFKTKWSKSISTSIRSIQNNQNIVISKAD
FT                 KGNCVVIMNKTDYIKKVEEMIHDGPYIRLPQDPTPNLSKKVELISKRLAEQ
FT                 EKLTPQVASNLVIKDPRAPILYGAPKIHKENTPLRPVVDFRMSPTYNLASH
FT                 IANILKNVTTNHKYSIKNSTDFVKEIKTLKRRPGDLMVSFDVVSLFTKVPI
FT                 EQSLNIVKNRLNRISDLTSITKLSVDDIMECLKICLSSTYFKFQDGYYSQM
FT                 EGTAMGSPISAIIAEIFLQELEIQTIANERAIYFWRRYVDDIFALIKHRKK
FT                 KTILAKINDFHNSIKFTTEEENHGKLPFLDLMLYEKSNRSIGYHVYRKPTN
FT                 TNKYLNYNSHHPLAHKIGVVDTLLTRAHRLSDETHIEEELGLTMDILRKND
FT                 YPNKLIKNRLDIVKRKAELNFPKKDPEFEKRIILPYAGDVTTKIAKFLRRK
FT                 LEIELGYYPGTKLSSLICNTKEKPPNTKAGIYNFKCKNCSSKYFGETQRDY
FT                 EKRFAEHQSDIRRAVTTSPVSLHMAENDHQVDTTSVKLIMKEKRRYFRKFK
FT                 EALCIRSTEEKMNNSQGMHINPIWCSALVTFLNYQSP"
XX
SQ   Sequence 2817 BP; 1132 A; 554 C; 419 G; 711 T; 1 other;
     aacatatttt taaattatca atcgccataa tcaccaaaac tgcacttcat taatcccaaa        60
     aacaaatatg tatgtacttc gccatttatg atttgtcccc aatttatgac ctgatgaagg       120
     tatctgtatg tgccgaaagc ttgtcaataa actcaatttc aaaaatatgt cctccaacgc       180
     cgatcaatca aattatatat ataacagagg atggaagcaa ctactacaca aaatacggac       240
     gctccacggc ggggctgaag tcatcgacgt tagaaaattg gaatctcttc ataaaaggaa       300
     agtacaaatt caaaataaca caatcttctt gaaaagatgc aaaaatctta atttaacacc       360
     aaaaggcttc aaaatgcaac atttaactaa acagtttgga cctcatccac taattgccaa       420
     atttcaaacc gagtatgaag agaaactcct taaaacaatg atcaagatca attttcaaga       480
     attacaccaa attgagaatg atttaaaaaa attaagaatc tcgaccagag aaaaaatgcc       540
     acaattatgg ggatggatat gtgaattaat aaaccacaca caagactcca tccagactca       600
     aatcaaacaa cggcacgtas aaaaactaga cgccctaaat aaagaatcgg catctaaaat       660
     tattgaccaa cattcaaatc ccgaaagtcc aattctaatc caaaatcttt cttcatacaa       720
     accggatgaa aatgaagaaa aattactgaa acttggtcta aacttctcac taccacacaa       780
     agacataaga ataccgatga ttgacacagc agccacaata gaattacgaa tgttggacat       840
     ggagataaca gagaacgtta aaaatgatgt tcgaactggc gtaacccaaa ttatgaaaaa       900
     attcgtcaat aaatctaact tcaaaacaaa atggagtaag tcaatttcaa catctatccg       960
     gtcaattcaa aacaaccaaa acattgtcat ctccaaagct gataaaggaa actgcgtggt      1020
     cattatgaat aaaacggatt acattaagaa agtagaagaa atgatacacg acggacccta      1080
     tattcgatta ccacaagatc caacgcccaa tctttcgaag aaagtagaat taatttccaa      1140
     gaggttagct gaacaagaaa aattaacacc acaagtagca agcaatcttg taataaaaga      1200
     cccaagagca cccatattat atggagcccc aaaaattcat aaggaaaaca ctcctctccg      1260
     tcccgttgtt gatttcagaa tgtcaccaac ttataatctg gcttctcaca ttgcaaatat      1320
     tttgaaaaat gtcacaacaa atcacaaata cagtattaaa aactcaacag attttgtgaa      1380
     agagattaaa actctcaaaa gaagacccgg agacctcatg gtatcttttg acgtcgtctc      1440
     actgtttacc aaagtaccaa tagaacaaag tctaaatata gtcaaaaata gactcaacag      1500
     gatatcagat ttaacttcaa tcacaaaatt atccgttgat gatattatgg aatgtcttaa      1560
     aatatgtctt tcctccacat attttaagtt tcaggacgga tactactcac aaatggaagg      1620
     gacagcaatg ggaagtccga tttcggccat aatagcagaa atatttttac aagaattaga      1680
     aattcagacc attgccaacg aacgtgcaat ctatttttgg cgcagatatg tagatgacat      1740
     cttcgcatta atcaaacatc gaaagaagaa aacaatatta gccaaaatca acgatttcca      1800
     taactcaatt aagtttacca cggaagaaga aaaccacggg aaattaccgt tcttagactt      1860
     gatgttatat gaaaaatcta accgatcaat tggatatcat gtatacagga aacctaccaa      1920
     caccaataaa tacctgaact acaattcaca ccacccactg gctcataaaa ttggtgtagt      1980
     ggacacttta cttacaagag ctcatcgact gtcggacgaa acccacattg aagaagaatt      2040
     gggattaaca atggacattt taagaaaaaa cgattatcca aacaagttaa ttaagaatag      2100
     attggatata gtaaaaagaa aagcagaact aaattttcca aaaaaagatc cggagtttga      2160
     aaaaagaatc attttacctt atgctggaga tgtaactacg aaaatagcta aattcttgag      2220
     aagaaaattg gaaatagaac ttggatatta ccctgggact aaactaagct ctcttatatg      2280
     taacacaaaa gaaaaacctc ccaacaccaa agctggaatc tacaatttca agtgtaaaaa      2340
     ctgctcatct aaatattttg gagaaactca aagagattat gagaagagat ttgcagaaca      2400
     tcaatccgac atacgcagag cagtaacaac ttctcctgta tcattacaca tggcagaaaa      2460
     tgaccatcaa gtagacacaa cttctgtcaa attaattatg aaggagaaaa gacgctattt      2520
     ccggaagttt aaggaagcat tatgcatacg cagcacagaa gaaaaaatga ataactctca      2580
     aggaatgcat atcaacccta tatggtgctc agcactcgtc acttttttaa attatcaatc      2640
     gccataatca ccaaaactgc acttcattaa tcccaaaaaa caaatatgta tgtacttcgc      2700
     catttatgat ttgtccccaa tttatgacct gatgaaggta tctgtatgtg ccgaaagctt      2760
     gtcaataaac tcaatttcaa aaatatgtcc tccaacgccg atcaatcaaa ttatata         2817
//
ID   Penelope-9_LMi repbase;    DNA;    INV; 2183 BP.
XX
AC   .
XX
DT   06-MAY-2014 (Rel. 19.11, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-9_LMi.
XX
NM   Penelope-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2183
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3184-3184 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           238..1920
FT                 /product="Penelope-9_LMi_1p"
FT                 /translation="MIGERKALKELNADNDIVVLPADKGNATIVLNKDDYE
FT                 SKILDLLTSGQYRKLKKDPTASVLKKTNTLIKSSTSIPKEDKKALLKSEAM
FT                 CPRLYGLPKVHKINIPLRPIVSAINSPTYEIARYLATCLQPYIGKTDSYIK
FT                 DSSHFIGKLEGLTLRPEDMLVSFDVVSLFTMIPVNEVMTFITDIFPEDLTT
FT                 LFKHCLTSSQFQWGGDFYEQVDGVAMGNPLGPAIANFYMEKFEQSALGIAK
FT                 KKPVLWYRYVDDTFVVWPHGKEALDEFFSHLNNINKKIQFTMEMEKDSAIS
FT                 FLDVLVMREVDGKLKHKVFRKATHTDRYLHKNSNHHPQQKRGVIKSLVDRA
FT                 KKICTPEHLDAELKHLKQAFKKNGYSDKEINRVLRPNNNSLRTRDQTKRWK
FT                 NTVSLPFIGKVTDQIGKILRKHNIRPVFRPTKKICQVLRSVKDKRPTLSAC
FT                 GVYKIPCTCGKVYIGTTKRSIETRLKEHKSLCRLGKTEKSAVAEHALQSGS
FT                 HIVRFSETSVLSTMTNYYPRQYREAIEIYKHKENFNRKEEAMKLSDIWTVA
FT                 LKDRQVLSLTDCNR"
XX
SQ   Sequence 2183 BP; 765 A; 416 C; 441 G; 561 T; 0 other;
     cacacatgta gtgatgactg acactgttat caataagtca aaaagagtat tgctcaagac        60
     gagatttccg tccttacaaa aggtggaaac tatgctataa cgcctgtgga agtacagttg       120
     aggatattat tgcgaatgtg aagcaggaat aagaactctc ccgaaagaaa ctgcaaatgc       180
     aattcggatt gaaaccacca gagtactatg tcgcagtaac ctctgaaaag taatttgatg       240
     attggagaga gaaaggctct caaagaatta aatgcagaca atgatatagt ggttcttccc       300
     gcagacaaag gcaatgctac catcgttcta aacaaggatg attacgaaag taaaattttg       360
     gaccttttaa cgtcaggaca gtacagaaag ctcaagaagg accctacagc cagcgttttg       420
     aaaaagacaa atactctgat aaagtcatct acctcaatcc caaaagaaga taagaaagcc       480
     ttgttgaaga gtgaagccat gtgtccaaga ctttatggcc tacccaaggt tcataaaatt       540
     aatattcctc ttagaccgat cgttagtgcc atcaactccc caacgtatga aatagcaaga       600
     tacctggcaa cttgtctaca gccatacatt ggtaaaactg actcttatat aaaagattca       660
     agtcatttta tcggaaaact tgaaggacta actttacgtc ctgaagatat gcttgtaagt       720
     tttgacgtgg tgtcattatt caccatgata ccagttaacg aagttatgac ttttataacg       780
     gatattttcc cagaagatct aactactctt tttaaacatt gcttgacttc tagtcagttc       840
     cagtggggcg gtgattttta tgaacaagtt gatggtgttg ccatgggtaa cccattgggt       900
     cctgcgattg ctaattttta tatggaaaaa ttcgaacaat cagctttagg aatagcaaaa       960
     aagaaaccag ttctatggta tcggtatgta gacgatacat tcgtggtatg gcctcacggt      1020
     aaagaagcat tggatgaatt cttttctcat ctgaataaca taaataaaaa aatccagttt      1080
     acgatggaaa tggaaaagga cagcgcaata tccttcttgg atgttttagt tatgagagag      1140
     gtagatggaa aactgaaaca taaagttttt cgaaaagcta cacacacaga cagatattta      1200
     cataagaact ctaatcatca cccacagcag aagagaggtg tcatcaaaag tctcgttgac      1260
     agagccaaga aaatttgcac tccggaacac ctggatgctg aattaaaaca cctgaagcaa      1320
     gctttcaaga aaaatggcta ttcagataaa gaaataaaca gggttctgcg accaaataac      1380
     aatagtctaa gaacacgtga tcaaacaaag cgatggaaga acacagtttc cctgccattt      1440
     atcggaaaag taactgatca aataggaaaa atattacgca aacacaacat cagaccggtt      1500
     ttcagaccaa ctaagaaaat atgtcaggta ctccgttctg tgaaggataa acgacctact      1560
     ctttctgctt gtggcgttta taaaattccg tgtacatgtg gtaaagttta tattggaacc      1620
     acaaaaagaa gtatagaaac taggctgaag gaacacaaaa gtctttgccg actaggaaaa      1680
     acagagaaat cggctgtggc agagcatgct cttcaatctg gaagtcatat agtgaggttt      1740
     tccgaaacat cagttttatc tacaatgacg aattattatc cacgacaata cagggaagct      1800
     attgaaatat ataaacataa ggaaaatttt aacaggaaag aagaagctat gaaacttagc      1860
     gacatatgga cagtagcttt gaaagatcga caggttttat ctctgaccga ttgcaatcga      1920
     tagtgatgtt ttatctctga caaggactat ctctgctgat aacgtgacag cttggccacg      1980
     cccacttttc acagtatata tggcgctctc agacacccga ctcatcagtc ggcaagactc      2040
     aacgcaagta agaagacctc cgaagatgtc cggcgcagct ctggacgaaa cgttaggaga      2100
     aactgaaaag ttttatggac cacggcctta taacccggaa gttctaccag caactatgat      2160
     ccggtcgtga aagccttcat gca                                              2183
//
ID   Penelope-9_TrVa repbase;    DNA;    INV; 2401 BP.
XX
AC   .
XX
DT   21-OCT-2021 (Rel. 27.01, Created)
DT   21-OCT-2021 (Rel. 27.01, Last updated, Version 2)
XX
DE   Penelope-like retrotransposon from the glasshouse whitefly genome
DE   - consensus.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope-9_TrVa.
XX
OS   Trialeurodes vaporariorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Trialeurodes.
XX
RN   [1]
RP   1-2401
RA   Kojima K.K.;
RT   "Penelope-like retrotransposons from the glasshouse whitefly
RT   genome.";
RL   Repbase Reports 22(1), 634-634 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..2071
FT                 /product="Penelope-9_TrVa_1p"
FT                 /note="reverse transcriptase and GIY-YIG
FT                 endonuclease."
FT                 /translation="MKNEKMDRKLQNLILAMGRWIENLTDRVVPSVVLNTL
FT                 ALGPNFTCNTFLEKSGKERRELSKIYSIDTVVANFESNIAYEQEPVQNLIR
FT                 EKTAAVIHNFLGRMNSGANQDGDIESKXFLQDVRKGIHETRKFLNENPEML
FT                 VMEADKSNKSVLIEAEDYHRKMMQLLNDVSVYRKISRDLSNTQQLKNNAMV
FT                 ENWCKLGYIQKQTRDWLITKDALAPKIYGLVKLHKPDKPLRPIVSCVQSAF
FT                 YNMSKYLGNILSKIVGKTSSFIKDSFHFREFIKHQKVPEHFILASLDVKSL
FT                 YTNIPLELVKKVIENNWDKIKSHTKLPKKEFVYALDVCLNSTFFQFGEEFF
FT                 QQISGVAMGGPVSAVVANLVMEYVESEVLKTLRCEHVFYKRFVDDCLICIP
FT                 ENMHIYVLEHFNAFNPHLQFTIELEKNKSINFLDMSLDHQVDECLRTKWYQ
FT                 KPSSSGRYLNYFSAVPQKWKTNVVFNLLQRAMKLSDKCYRVESIRKAEKLL
FT                 SENGYPSTLIQKMNRKCWHSCRENGRTVINTPEIDGNKFIRMPYVKGLSES
FT                 LKKCWKTYGWQPVYTKNNTNRKLFSKLKSAVPVDKNSNVVYRIDCQDCDGV
FT                 YIGQTKRYLKERIQSHKYNKNEITALHQHAQENDHQFNFAEPKILVREKNI
FT                 KARLIHEAIQVKRCPRAVNFRTDTRALSVAYSSLF"
XX
SQ   Sequence 2401 BP; 776 A; 402 C; 500 G; 722 T; 1 other;
     aagttcgaaa attgaaagaa tgaaaaatga aaaaatggat agaaagctgc agaatttgat        60
     acttgccatg ggtcgatgga ttgaaaattt aacagatcgt gtagttccta gcgtggtttt       120
     gaacacgtta gctttagggc cgaatttcac gtgcaacact tttctggaaa aatctggtaa       180
     agagcgcaga gagctgtcta aaatttacag tattgataca gttgttgcta attttgaatc       240
     taacattgcg tatgagcagg agccagttca aaatcttata agagaaaaga cagcggcagt       300
     tattcataat ttcttaggac gaatgaacag cggtgccaat caagatggtg atatagaaag       360
     taaaatkttt ttacaggatg tcaggaaagg tattcatgaa accaggaaat ttttaaatga       420
     aaatccagaa atgctggtca tggaagctga taaaagtaac aagagtgttt taatcgaagc       480
     cgaggattac cataggaaaa tgatgcagtt actaaatgac gtttcagttt atcgtaaaat       540
     tagtagagat ctatccaaca cccaacaact caagaacaat gccatggtag aaaattggtg       600
     taaactaggt tatattcaaa aacaaacgcg cgattggtta attaccaagg atgctctagc       660
     accgaaaatt tacggccttg taaaactaca taaaccagat aaaccacttc gtccgattgt       720
     cagttgtgtg cagtctgcgt tttataacat gtcaaaatac ctaggaaata ttttatccaa       780
     aattgttggc aaaaccagct ctttcattaa agattccttt cattttcgtg aatttataaa       840
     acaccaaaaa gtacccgaac attttatcct cgcatcgctc gatgtaaaat ctctgtatac       900
     caatattccg ttagaacttg tgaaaaaagt gattgaaaac aactgggata agattaaaag       960
     ccatactaaa ttacctaaga aggaatttgt ttacgcttta gatgtttgcc taaattccac      1020
     gtttttccaa tttggtgagg aatttttcca acaaatttcg ggcgtggcca tgggtggacc      1080
     ggtttctgcg gttgtggcca atttagtcat ggaatacgta gaaagcgaag ttttgaagac      1140
     cctgaggtgt gaacacgtgt tttataagag gttcgtagat gactgcctta tttgtatccc      1200
     tgaaaacatg catatttacg tattagagca ttttaatgca tttaaccccc atcttcagtt      1260
     tactatagaa cttgagaaaa acaaaagtat caattttttg gatatgtcgt tggaccatca      1320
     agtggatgag tgtttacgaa cgaaatggta ccagaaaccg tcgagctcag ggagatactt      1380
     aaattatttt tcagcagtac cacaaaaatg gaaaacaaat gtggttttca atttattaca      1440
     acgtgctatg aaactttcag acaaatgcta tcgtgtggag agcattagaa aggcagagaa      1500
     gttactcagt gaaaatggtt atccgtcaac tcttatccag aaaatgaacc ggaaatgctg      1560
     gcacagttgc agggaaaatg gacgcacagt aatcaacact ccagaaattg atggaaataa      1620
     gtttatcaga atgccttatg tcaaaggttt aagtgaaagc ttgaaaaaat gttggaaaac      1680
     gtatgggtgg caaccggttt acacgaaaaa caatacaaat aggaaattgt tttcaaaatt      1740
     gaagagcgct gtacctgttg acaaaaactc taatgtagta tatcgtattg actgccaaga      1800
     ttgtgatggt gtttatattg gccagactaa gaggtacctc aaggagagaa ttcagtcgca      1860
     taaatacaac aaaaatgaaa tcacggcact ccaccaacat gcccaagaaa acgaccacca      1920
     gtttaatttt gccgaaccta aaatattggt gagagaaaag aacatcaaag ccaggttgat      1980
     tcatgaggcg attcaggtga agcggtgtcc tcgggcggtc aacttcagga ctgacacgcg      2040
     tgcactgagt gttgcctaca gctccttatt ttgaggttgg tcatgtgact ggctgtcata      2100
     gtccgtactt attacgtaat tgtgtaactg gtgcggtttt attttcgttt cattttcgta      2160
     cttattcgct gtttgtcgat atcggtgtct cagctgagct cgcggaatct cattgttgtg      2220
     ttttatttcg cgtttttatt tctcgtgttt cctttgttta gttttaatgt cgtatttcat      2280
     tacggttcga tttaagtttc catcgtttta gttttagttt tagtttcgtg catttcactg      2340
     aggatgagca ctaagatgct cgaaacgtct gaataacttt atttttcaat ggaagtcgca      2400
     t                                                                      2401
//
ID   Penelope1_Dw repbase;    DNA;    INV; 2789 BP.
XX
AC   .
XX
DT   25-JUL-2007 (Rel. 12.07, Created)
DT   08-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope1 retrotransposon from D. willistoni - a consensus
DE   sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; reverse transcriptase; retrotransposon;
KW   Penelope-like element; GIY-YIG endonuclease; Penelope1_Dw.
XX
NM   Penelope1_Dw.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2789
RA   Arkhipova I.R.;
RT   "Penelope retrotransposons from Drosophila willistoni.";
RL   Repbase Reports 7(7), 628-628 (2007).
XX
DR   [1] (Consensus)
XX
CC   Penelope1_Dw from Drosophila willistoni is 68% identical to
CC   Penelope from D. virilis  (U49102), and 70% identical to
CC   Penelope2_Dw, another D. willistoni Penelope element.  There are
CC   about 60 copies of Penelope1_Dw in the sequenced part of the D.
CC   willistoni  genome, most of which differ from the consensus by
CC   1-5% but can differ as much as  10-15%. Most of the copies are
CC   5'-truncated, and only one appears to be fully intact
CC   (AAQB01006297) and is arranged in a characteristic
CC   partial-tandem, forming  "pseudo-LTRs".
XX
FH   Key           Location/Qualifiers
FT   CDS           32..2530
FT                 /product="Penelope1_Dw_1p"
FT                 /translation="MTTTDGPPIATQTIGFAEIKLNYSNTKTTINRHQTTS
FT                 KKLVRLKSSLKFLLKCRKSKLIPNFIKNTTRCDNIFKFDNNTFPDINKTLD
FT                 RYTYFFHTKILNLLIKHKHNTLIRINNKLAETTKTLGKQLDEQSMSAFLER
FT                 EQNAVKRLTKTLREHHEMKHEKLNNKRNFALLNNNRTDDWFVNETELEFPP
FT                 DIKSLLSKGPKFALPIEHEKLPLIKYIADGEEIVQTIKEKEKQEAARTAFS
FT                 LMVKEHRAMKYINATDRAILNITQRTYKFLKQHDDILILTSDKGNKTVAMK
FT                 KIDYDHRMMDILSDLNTYRILRKDPTTRLQTKNNNLVDKLHKMGVISKIEK
FT                 NRMTTTTAISPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILRNI
FT                 TLDSKYNIKNATEFKQRINNTYICDDEQLISFDVVSLFPSIPTDLALDTIR
FT                 NKWTKIQEYTKIPKALFMEIVKFCIQENRYFTYKDQTFIQLKGMPMGSPAS
FT                 PVIADIVMENLLDTTMDKLTRPPRLLTKYVDDIFSIIHQDDIDKTLDTLNS
FT                 FDRNIKFTMELEDNGKLAYLDSMVIRRGNELKLKWYRKPTASGRIINFNSK
FT                 HPKTMIINTARSCIQRMLNISDKIYHEETKMEIINILKDNDFPDNVIRTLF
FT                 KKHKSTIDKTKNEKTYISVTYVPKLSERLSHSDCYDKDGIKIAHKPDNTLK
FT                 HVFNKTKSKIEMTNRSNVIYKIPCNGQGNIPCNKIYIGTTKSKLKTRISQH
FT                 KSDYKMRHYTDTPKTALMTHCATSGHAPNFEETTILDEERHYNKRFTMEML
FT                 HIINTPSATRLNFKTDTDNCAHIYRHLLDKN"
XX
SQ   Sequence 2789 BP; 1161 A; 522 C; 447 G; 659 T; 0 other;
     taacaacaca aaggtcgcaa aaactaccac aatgacaaca acggatggcc cgccgatcgc        60
     aacccaaacc attggatttg cggaaataaa acttaactac agcaacacaa aaacaacaat       120
     taatagacat cagactacct ccaagaaatt agtaagactg aaaagtagtt taaaatttct       180
     gttaaaatgt agaaaatcta aattaattcc caattttatc aaaaatacca cacgatgtga       240
     taatattttt aagtttgaca ataacacatt tccagacatt aacaaaacat tggacagata       300
     tacatatttc tttcacacaa aaatattaaa ccttcttata aaacataaac ataacactct       360
     cataagaatc aacaacaaat tagctgagac aacaaaaact cttggaaaac agctggacga       420
     acagagcatg agcgcatttt tggagagaga acaaaacgca gtaaaaagac taacaaaaac       480
     attgcgggaa catcatgaaa tgaaacatga gaaactaaac aacaaacgga actttgctct       540
     cttgaacaac aacagaactg acgattggtt tgtaaatgag acagaattgg aattcccgcc       600
     ggatataaaa tcattacttt caaagggtcc aaagtttgct cttcccatag aacacgagaa       660
     gctccctctc attaaataca ttgccgatgg agaagaaata gttcagacga ttaaggaaaa       720
     agagaaacaa gaggcagcgc gtactgcatt ctctttaatg gttaaagagc atagagcgat       780
     gaaatacata aatgcaacag atcgtgcaat attaaatata actcaacgga catacaaatt       840
     tcttaaacaa catgacgata ttttgatatt aacatctgac aaaggaaata aaacggtagc       900
     aatgaaaaag attgattatg accatagaat gatggacatt ttgtcggatc taaacaccta       960
     tagaatcctc aggaaagacc caacaacacg attacagaca aagaacaaca atctggtgga      1020
     caaactacat aagatggggg ttatctcaaa gattgaaaag aacagaatga cgacaactac      1080
     ggcgatctct ccaagaatat atggactacc aaaaatacac aaagaaggga caccattgag      1140
     accaatttgt tcgtcaattg gctcaccatc ctatggactt tgtaaataca ttatacaaat      1200
     tttaaggaat ataacattgg actcgaaata taacataaaa aacgcaactg aattcaaaca      1260
     acgcataaat aacacataca tttgtgacga tgaacaatta atttcgtttg acgtggtatc      1320
     attatttcca agcataccaa cggatttagc attagacaca atcaggaaca aatggactaa      1380
     aatacaggaa tacacaaaga taccaaaagc tttatttatg gaaatagtaa aattctgcat      1440
     ccaagagaat agatatttta cctacaagga ccaaacattt atacaattaa aaggaatgcc      1500
     gatgggatct ccggcctcac ctgtgattgc ggacatcgtt atggaaaatc ttctggacac      1560
     tacaatggat aaactaacca gaccaccaag attattgacg aaatatgtag atgatatttt      1620
     ttcaattata caccaagatg acatcgataa aacactggac accctaaatt catttgacag      1680
     gaatataaaa ttcactatgg agctggaaga caatggaaaa ctggcgtatt tggactctat      1740
     ggtcatcaga cgaggaaacg aattaaaact aaaatggtac aggaagccaa cagcatcagg      1800
     acgaatcatc aatttcaact caaaacaccc taagacgatg ataataaata cagcaaggag      1860
     ctgtatccaa cggatgctga acatttcgga taaaatatac catgaagaaa cgaagatgga      1920
     aataataaat attttaaagg acaacgattt tccggataac gtaatcagga cattatttaa      1980
     aaaacataaa tccaccattg acaaaactaa gaatgaaaaa acatatatat cggtcactta      2040
     tgtacccaaa ttatcggaaa gactatcaca ttcggattgt tatgacaaag atggaataaa      2100
     aatagcacat aaaccggaca ataccctcaa acatgtattc aacaaaacaa aatccaagat      2160
     agagatgact aatagaagca atgtgatata caaaatccca tgcaatggac aaggaaacat      2220
     accgtgcaat aagatataca tagggacgac aaaatcgaaa ttaaaaacta ggatttccca      2280
     acacaaatct gactataaaa tgaggcatta cacagacaca ccaaaaacag cactaatgac      2340
     acactgtgca actagtggcc atgcaccgaa tttcgaagag acgacaatat tagatgaaga      2400
     gcggcactac aacaaaaggt tcaccatgga gatgctacat atcatcaata caccgagcgc      2460
     cacacgactt aactttaaga ctgatactga caactgcgct cacatataca gacatttact      2520
     tgacaagaat tagttcgtaa ctccacgtca aacggtgctg acgtgttaaa taatgtatgt      2580
     tacaaaaaat tttgttaaat gtcacataat tgttaaatgt tcttgtattt tattgtagtt      2640
     gccctgaaga cggttgccgc tgcgcaaccg aaatatatcg gaaaataaat aaacttaaaa      2700
     acaatgtttt atttttattt ggaaaaatga cctaaagcct gatcaaaatt tttatataac      2760
     aacacaaagg tcgcaaaaac taccacaat                                        2789
//
ID   Penelope2_Dw repbase;    DNA;    INV; 2798 BP.
XX
AC   .
XX
DT   25-JUL-2007 (Rel. 12.07, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 2)
XX
DE   Penelope2 retrotransposon from D. willistoni - a consensus
DE   sequence.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; reverse transcriptase; retrotransposon;
KW   Penelope-like element; GIY-YIG endonuclease; Penelope2_Dw.
XX
NM   Penelope2_Dw.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-2798
RA   Arkhipova I.R.;
RT   "Penelope retrotransposons from Drosophila willistoni.";
RL   Repbase Reports 7(7), 629-629 (2007).
XX
DR   [1] (Consensus)
XX
CC   Penelope2_Dw from Drosophila willistoni is 68% identical to
CC   Penelope from D. virilis,  and 70% identical to Penelope1_Dw,
CC   another D. willistoni Penelope element. There are  about 60
CC   copies of Penelope2_Dw in the sequenced part of the D. willistoni
CC   genome,  most of which differ from the consensus by 1-5% but can
CC   differ by as much as 10-15%.  Most of the copies are
CC   5'-truncated, and only one appears to be fully intact
CC   (AAQB01010750) and is arranged in a characteristic
CC   partial-tandem, forming  "pseudo-LTRs".
XX
FH   Key           Location/Qualifiers
FT   CDS           73..2583
FT                 /product="Penelope2_Dw_1p"
FT                 /note="reverse transcriptase; GIY-YIG
FT                 endonuclease."
FT                 /translation="MAYAEIKSNYNKYKTVINKYQSTTKKSVKLKSSIKFL
FT                 LKCRKSKLVPKFISNNSKYNRIFTKDTDTYSDINKILERHTHNFHTKILSL
FT                 LIKHKHNILARQNKEKEKATKKLQEQLDENDFKTFMKSESTIAEKLSTTLK
FT                 RHHESKHERLRKQRNSVLLNKNNNNTNDWFVNKTNIEFPTDVKALLAKGPK
FT                 FAIPVEKRKFPLFKYIADGEELVQTLKDKEKQEEARTKFSLLIKDHKTSNK
FT                 EDAADRAILDTVEQTRKFLRQNDDILILTSDKGNKTVAMDKTEYDKKMDSI
FT                 LNDLNTYRTLRKDPTTRLQTKNNELVEKLYKHELISRTERNKLITNTSIPP
FT                 RIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIVNILKNITADSTYNVKNA
FT                 SEFKTRINDTYICDDERLISFDVVSLFPSIPIELALDTIREKWIKIKAHTN
FT                 IPKLTFMEIVRFCIQENRYFKYKDNIYTQLKGMPMGSPASPIIADIIMEEL
FT                 LDKMMRTLQRPPRVMTKYVDDLFAIIKEDEIQNTLDNLNSFDRNIKFTIEL
FT                 ENDNKLTYLDASIHRRGNELKLKWYKKPTASGRIINFNSKHPKSMIMNTAR
FT                 GCIQRMLNISDPIFHEETKKEIRRILKANDFPNYTIRTLLKSNNKKTNKEV
FT                 STKRFMSVTYVPQLSERLANSDCYDKEQIQIAHKPNNTLRSIFNRTKSKID
FT                 TMDKSNVVYKIPCNGTNEESCDKMYIGTTKSRLKTRLSQHRSDYKLRQHSN
FT                 IQKTALMAHCAASGHSPNFDEVNIIDQEQHYNKRYTLEMLHIINTPTNIRL
FT                 NYKVDTDNCAHLYRHLLGTSQCVAPRHSVRTCKNK"
XX
SQ   Sequence 2798 BP; 1197 A; 517 C; 451 G; 633 T; 0 other;
     taacaataaa aggtcgcaaa aaatcaacaa ttaacttgaa cggaaggcac gccgaaagca        60
     tattccaaca ccatggctta tgcagaaatt aagtccaact ataacaaata taagacggtg       120
     attaacaagt accaatcaac aacaaaaaaa tcagtaaaac ttaagtctag cataaaattt       180
     ctcttaaaat gtaggaaatc aaaattagtc ccaaaattta tcagcaataa ctcaaaatac       240
     aataggattt tcacaaaaga tactgacaca tattcggaca ttaacaaaat attagaaaga       300
     catactcata attttcacac aaagatatta agcttattaa taaaacataa acataacata       360
     ctagccagac aaaacaaaga gaaggaaaaa gcaacaaaaa agttacaaga acagctggac       420
     gaaaatgatt ttaaaacatt catgaagagt gagagcacga tagccgaaaa attatcaaca       480
     actttgaaga gacatcacga atccaaacat gagagactac gaaaacaacg gaacagcgtt       540
     ctcttgaaca agaacaacaa caacacaaac gattggtttg taaataagac gaatatagaa       600
     tttccgaccg acgtaaaagc gttactggcg aaaggcccta agttcgcaat cccagtggag       660
     aagagaaaat tccctctctt taaatatata gcagacggag aggagctagt acagactctt       720
     aaagacaaag agaaacaaga ggaagcacgc acaaaattct ctttattaat aaaagaccac       780
     aaaacatcta acaaagaaga cgcagctgat cgtgcaatac ttgacacagt ggaacaaaca       840
     aggaaatttc ttagacagaa tgatgacata ttaattttaa cttcagataa agggaataag       900
     acagttgcaa tggataagac tgagtatgac aaaaaaatgg atagtatact taacgattta       960
     aatacatata gaactttaag gaaggaccca accactagac tacagaccaa aaacaacgaa      1020
     ttggtggaaa aattatacaa acatgaactt atttcacgga ccgaacgaaa taagcttata      1080
     acaaacacat caattccacc aagaatatat ggattaccta aaattcataa agaaggtacg      1140
     ccattgagac caatctgctc atcaattggt tctccatcat acggactatg caaatacata      1200
     gtcaacatat taaaaaatat aacggcagac tcaacataca acgtaaagaa cgcctcagaa      1260
     tttaagacaa ggattaatga cacatatatt tgcgacgatg aaagattgat atcatttgac      1320
     gtagtctcac tttttccaag tattccaata gaattggcac ttgacactat tagggaaaag      1380
     tggataaaaa taaaagcgca cactaacatt ccaaaattaa cattcatgga aatagtacgt      1440
     ttttgtatac aagagaacag atattttaaa tacaaggaca acatatacac acaactaaaa      1500
     ggaatgccta tgggctcacc agcatcacca ataatagccg atataattat ggaagaactc      1560
     ttagacaaaa tgatgagaac actacagcga ccacctagag ttatgacgaa atatgtagat      1620
     gacctttttg ccataattaa agaagacgag atccaaaaca cacttgacaa cctaaattca      1680
     tttgacagaa acataaagtt tacaatagag ttagaaaatg acaacaaatt gacatatcta      1740
     gacgcatcaa tacacagacg aggaaacgag ctaaaattaa aatggtacaa aaaaccaaca      1800
     gcatcaggac gaatcatcaa cttcaactcc aaacatccga agtcgatgat aatgaataca      1860
     gcaagaggtt gtatacaacg gatgctcaac atatcggacc caatttttca cgaagaaacg      1920
     aagaaagaaa tacgacgaat tttaaaggct aatgactttc caaactacac cataaggact      1980
     ttactaaaat ccaacaataa gaaaaccaat aaagaggttt cgacaaaacg ctttatgtct      2040
     gtcacatatg ttccacaact gtcggaaaga ttggcaaact cggattgcta tgacaaagaa      2100
     caaatacaga tagcacataa acccaacaac acgctacgga gtattttcaa caggacaaaa      2160
     agcaagattg atacaatgga caagagtaac gtagtatata aaataccgtg caacgggaca      2220
     aacgaagaaa gctgtgataa aatgtatata gggacaacca aatcgaggct aaaaactaga      2280
     ctatcacaac atagatctga ctataaactt cggcaacact ccaatataca aaaaacagca      2340
     cttatggccc actgtgctgc cagtggacat tccccaaatt ttgacgaagt aaacataata      2400
     gaccaagaac aacattacaa caaacgttat actttggaga tgctgcacat aataaataca      2460
     ccgacaaata taagacttaa ttataaggta gatacagaca actgcgcgca tttatacagg      2520
     catttattag ggacaagtca gtgtgtagct ccacgtcaca gtgtgcggac gtgtaaaaat      2580
     aagtaggtgt ttcttgttgt tatattatgt tatgttaaag ttaatcacaa ttaaatgttt      2640
     ttatagttgc cctgaagacg accaccgatg agtggtcgaa atatatcgga aaagaacaac      2700
     acaaaatatt attattttgt tttattcacc caagaaaatt tgacctcgag ccggcaaaac      2760
     atacatttaa caataaaagg tcgcaaaaaa tcaacaat                              2798
//
ID   Penelope_Ele2 repbase;    DNA;    INV; 3068 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2021 (Rel. 26.10, Last updated, Version 3)
XX
DE   A Penelope-like element family from Aedes aegypti.
XX
KW   Penelope/Poseidon; Penelope; Non-LTR Retrotransposon;
KW   Transposable Element; Penelope_Ele2.
XX
NM   Penelope_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3068
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3068
RA   Kojima K.K. and Jurka J.;
RT   "Penelope-like elements from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (27-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 5
CC   sequences with >96% identity. Both terminal ~330 bp are PLTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..2723
FT                 /product="Penelope_Ele2_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MASTLSESNTFIKLKKSIAGLKKDIAFLSECRKLNLT
FT                 PKSHKIKVRGQVPQDIIKKMESEYLRSSIKKLHSKLNSQTLKCYSLHLKLA
FT                 KQYPWEFPLFLTKVIQAEECEARRKKDIHSKKLAILKNKQHNKVVTALPKV
FT                 HSIEGFVVNRSTQQFSEEQLTLLNKGLAYAVATKPDIEQTIIDVETAITHT
FT                 IPIEFQESARNDTEESLKGNKFQLRGQNSDEDKVLSELRDKSVYYVKADKG
FT                 NAVVILDKDDYDNQMNEKITTGPYRHFRVDPLPTMVRHVEKTLKECKPLLG
FT                 DNTSRLKVSNPVLPRIKGLPKIHKPGNEMREIISAEGSPTHKLAKWLVKEF
FT                 QSMPKPFESRSVNNTQEFASQLQASGYIQDDEIMVSFDVKALFPSVPVKEA
FT                 INLLEEWLLNQHNESNWKNKVRYYIKLTRLCMEENYFSFRGNFYKQTKGAP
FT                 MGNPLSPFLSELFMANFESILKKKDLLPQRWWRYVDDVFSIIKKDYLPKIL
FT                 EAINSIHKDIKFTHEEEKDNKLPFLDLLITRESSHFEFEIYRKPTNTMRVI
FT                 PSTSNHTYQHKMAAFHHMIHRMQTLPLSETGKSKELDYIFETARLNGYRNS
FT                 TIQAVVDKRARDKYRKSMTTLTAEKEDLKRVAVNFDTKITQPLAKKFRKYG
FT                 VDLVFSSRSSQLKSRLGSTKDKINKLNRAGVYKISCPHCNKIYIGQTKRTL
FT                 EIRFKEHIAEVKKADKELEKGLAYDFKSKVAEHVFQDGHQMTSDNIDIVRS
FT                 VSSSWKLDVAESLEIYKQKPSLLLNRDQGNGQSRLFKFVPKKYKRA"
XX
SQ   Sequence 3068 BP; 1097 A; 496 C; 613 G; 862 T; 0 other;
     agttagggat ttgtataatt attattatcc cccttttcaa tttttgacca agacatgaca        60
     ggtatactcc tgtcgaaatt ttttcctagg tagtttgatt gtgtaggtac ttatctggtg       120
     ttagtattta aggtagagag atgcgacgat ttcttcagtg gatacgagta actgacactg       180
     aagaagactg caagtggtag tcgaaatacg cgtatctgtc aaagataagc atttaggagc       240
     ggaattaaaa ggtacacggt actccatcta ctttaaagtt tctctatttg agattctgct       300
     cagaggattc gaacattcat taaagagttg taatggcttc cacgctttcc gaatcaaata       360
     cttttatcaa gctgaagaag tcgatcgcag ggttaaaaaa ggacatagca tttttaagtg       420
     agtgtcgtaa gcttaatctc acaccaaaga gtcataaaat taaggttaga ggtcaggtcc       480
     cccaggacat tattaagaaa atggaatcgg aatatttacg atccagtatc aagaagttgc       540
     actcaaaact gaactcacaa acattgaagt gctatagttt acatttgaaa ttggccaaac       600
     aatacccttg ggaatttcca cttttcctta ccaaggtgat acaagcagag gagtgcgaag       660
     cacgtagaaa gaaagatatt cactcaaaaa aattagcaat tttaaagaat aagcagcaca       720
     acaaagtggt aacagcattg ccgaaagtcc attctattga aggttttgtg gtcaatcgct       780
     cgacgcagca gttctcagaa gaacaattga cacttctcaa taagggatta gcatatgcgg       840
     ttgccacaaa accagatatt gaacagacaa taatcgatgt tgaaaccgcc attacacaca       900
     caataccaat agagtttcaa gaatctgcta gaaatgacac tgaagagtca ttaaaaggta       960
     acaaatttca attaagaggt caaaatagtg atgaggataa agttttgagt gaacttcggg      1020
     ataagtcggt atactatgta aaagcggaca agggcaatgc agtggttatt ttggataaag      1080
     atgattatga taatcaaatg aacgaaaaaa taaccactgg tccctatagg cattttagag      1140
     tcgatccact tcccacaatg gtgagacatg tagaaaaaac tttaaaagaa tgtaagccac      1200
     ttcttggaga taacactagc cgcctcaaag tttctaatcc agttctacca agaattaaag      1260
     gattgccaaa aattcacaaa cctggcaatg aaatgagaga aattatatca gcagaagggt      1320
     ctcctacaca caaacttgca aagtggctgg ttaaggaatt ccaatccatg cccaaacctt      1380
     ttgaaagccg ttcagttaac aatactcagg agtttgcaag ccaacttcag gcttctgggt      1440
     atattcaaga tgatgaaatt atggtttctt ttgatgttaa agcattattt cctagtgtgc      1500
     cagttaaaga agccataaac cttttggaag aatggctact taaccaacac aatgagtcaa      1560
     attggaaaaa caaagttcgg tattacatca aattaacccg actttgtatg gaagagaact      1620
     attttagctt ccgtggtaat ttttataaac agacaaaagg tgcacctatg ggtaatccat      1680
     tgtctccgtt tttgagcgag ttgtttatgg ccaattttga aagcattttg aaaaagaaag      1740
     atttgttacc acagcggtgg tggagatatg tagatgatgt gtttagcatt atcaaaaagg      1800
     attatttgcc aaaaatttta gaagcaatta acagtatcca caaagatatt aaatttactc      1860
     atgaagagga aaaggataat aaactacctt ttttggattt gctaattact agggaatcgt      1920
     ctcactttga atttgaaatt taccggaaac caactaatac tatgcgagtt attccgagta      1980
     cttccaacca cacttatcag cataaaatgg cggcttttca tcatatgata catagaatgc      2040
     aaacccttcc tttaagtgaa actggaaaat caaaagaact ggattatatt tttgagacgg      2100
     ctaggcttaa cggatatagg aatagtacaa tacaagcagt agtagataag agggcaaggg      2160
     ataaatatag gaaaagtatg acaacactta ctgccgaaaa agaggattta aaaagagtag      2220
     cggtgaattt tgataccaag attacacagc ctttggctaa gaaatttcga aaatatggag      2280
     tagatttggt tttcagcagt aggagtagtc agcttaaatc tagattagga tcaacaaagg      2340
     ataaaattaa taaactgaat agagcaggag tatataaaat ttcatgcccc cattgtaata      2400
     aaatctatat aggacaaaca aaacgaactc tagaaataag attcaaagaa catattgctg      2460
     aggtaaaaaa agcggacaag gaattagaaa agggattagc gtatgatttt aaatcaaaag      2520
     tggctgaaca tgttttccag gatggacatc aaatgacaag cgataacata gacatcgtac      2580
     gaagcgtatc ttcatcttgg aaactagacg tcgctgaaag tttagaaatt tacaaacaaa      2640
     agccttcact acttcttaat agggatcaag gaaacggaca atcaaggctg tttaagtttg      2700
     tacctaagaa atataaacga gcttgaatac ataggtagat agttagggat ttgtataatt      2760
     attattatcc cccttttcaa tttttgacca agacatgaca ggtatactcc tgtcgaaaat      2820
     tttttcctag gtagtttgat tgtgtaggta cttatctggt gttagtattt aaggtagaga      2880
     gatgcgacga tttcttcagt ggatacgagt aactgacact gaagaagact gcaagtggta      2940
     gtcgaaatac gcgtatctgt caaagataag catttaggag cggaattaaa aggtacacgg      3000
     tactccatct actttaaagt ttctctattc gagattctgc tcagaggatt cgaacattca      3060
     ttaaagag                                                               3068
//
ID   PERI        repbase;    DNA;    INV; 1791 BP.
XX
AC   BK007962.1;
XX
DT   20-OCT-2015 (Rel. 21.03, Created)
DT   20-OCT-2015 (Rel. 21.03, Last updated, Version 1)
XX
DE   Drosophila buzzatii DINE-1 transposon PERI.
XX
KW   Helitron; DNA transposon; Transposable Element; Helitrons;
KW   Heterochromatin; DINE-1; Drosophila; transposon; PERI.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-1791
RA   Kuhn G.C.S.;
RT   "Characterization and genomic organization of PERI, a repetitive
RT   DNA in the Drosophila buzzatii cluster related to DINE-1
RT   transposable elements and highly abundant in the sex
RT   chromosomes.";
RL   Cytogenetics and Genome Research 132, 79-88 (2011).
XX
DR   GenBank; BK007962.1; Positions       1    1791.
XX
CC   PERI shares several structures in common with DINE-1, an abundant
CC   TE found widespread along the Drosophila genus. In Drosophila
CC   serido, PERI accumulates near or at heterochromatic regions of
CC   all six pairs of chromosomes, especially on the sex chromosomes,
CC   with some clustering.
XX
SQ   Sequence 1791 BP; 576 A; 318 C; 353 G; 544 T; 0 other;
     ttatactttg ttcccaaagg gaaaaaagta tattgggttt gtgcaatgtc cgtcttgctg        60
     tccgtccgtc tgtccgtctg tccgtatgaa cgcaatattt ttcggcgcta ttagagctag       120
     agacttgaaa tttggaacat atactcatat atgctcccga attataaagt gtaaaaattt       180
     tcctgatccg ctcactaggg gcgtggcaaa tcggaaaagt cttccgccca taggcaagtt       240
     atcatactag atgatgagct agagagttgc aatttggatt gtatactcgg ggtgacaacc       300
     caagttcaaa aagctatggc ggatatatct acgcccattg ggggcgtggc aaatcgggaa       360
     atacgtatct tctacaccgt tgaagctaga acgctgaaat ttggcatgta agttaatgtt       420
     ataattctaa gaagatcgac caaaaagttt tatgtctacg ccaattgggg gcgtggcaaa       480
     tcgggcttga atatttagtg atttttcaaa ttgtgctata ttttgaatat tattggcact       540
     agagactagc aatttggcat gtatactcgg gttgacaacc caagaccaat aagctatggt       600
     agatatagct acgcccacag ggggcgtggc aaaccgcaaa agtttatatc tcctgcagtt       660
     ttagagctag aagcttgaaa attggatggt tgagttacta atgtcagcct ctttgggggc       720
     gtggcatatc gaaaaatacc ctgtaatttt cgcatttttg gaatgtaagc aaccaaattt       780
     tgcagtcatg ttagcctcgg ccctttctac gaactggcca aaaattatgc gtccacgccc       840
     actgggggcg tggcaaatcg gcaaagaagt ttgttgtggc caactgcata atacatgctt       900
     ataatagctc agtattaatt actaagatgg cagaaagcat tttaacataa atataataat       960
     attaatgaat ttacaaaata aaatttataa gttttcgatt aataaacaaa atgtttccag      1020
     cgggactcga acccaggtca tttaaaataa catgaaatca ttagctaaac ccaaaacaaa      1080
     tcacagctga tgagctcatc agctgatcag cagcttggtt cgaaacaaaa taatgtatac      1140
     acacttggat gtgtgtacac ttacaaacag ctgtttacat atgcgtacat atgtatatat      1200
     atgcatgcat agaaaaacgc ttgccacgca gcgtggcaaa tcggaaaagt tgttttagtt      1260
     tttgcttaaa tgcacaattc atatgcgtat gtttataaat tattatcact tggcagcatg      1320
     ccttttataa taaatataca aatataaaca aaataaaaaa taataatttt tgaaaaaatg      1380
     ttttttgcgg gattcgaacc cacgcaccta agtatagttt gcatagcgct taccaccagc      1440
     gccactgccc tgatgtgggc attgttaact aaaaccaaaa accaaataat ccattgctag      1500
     agagcatttt gacaaaattg tagtaccgat cgaaaaattc acaattctta gaatattctg      1560
     gcatgcaaac ttttgtatgc atatgtacat agaaaattgt gtgtatactc gtatagtgtg      1620
     tacatgtgta aatctgtatg tatgtatagg aaaaacgttt gttgcttgcc atgtacgttt      1680
     tctaattgcc gaaatatttc gttaattaaa tgtttattaa ataaataaga tgcacctatg      1740
     ggaacaaagt atttcgcagt tagttgcgcc taactgcaac gttcttactt g               1791
//
ID   Phanio_DEr-I repbase;    DNA;    INV; 6030 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phanio_DEr-I.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6030
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           279..1217
FT                 /product="Phanio_DEr-I_1p"
FT                 /translation="MATEQIQLLSESHLNQALNQIRQIPSFSGDTQELSAF
FT                 IRRIEFILQLYPTTDPRQKHVFFSAIEMQLAGDAQRVSQLSGATTWPTLMN
FT                 ALISEYKTQTPCEELLRRLYNTPFNGSIRKFVEELEVKSFTISNKLMLENN
FT                 VNNTLLYTNALNNTVKDVIMRKLPDRLFMTLARHDITTVSKLKQIAQQEGV
FT                 YEITFNDRTKHQNNSNPNTNPPQTSKNKGNYQNFANYVMHNTNKSNPNNNS
FT                 KPIVSNQQVMHEFKQKLNQGRAQNPLNYPQHNSKAPNPPVKRQRESASDQY
FT                 KMDTSENFLQPASESESDPEE"
FT   CDS           4605..5999
FT                 /product="Phanio_DEr-I_3p"
FT                 /translation="MILMLCLLSTINTQYLEVTPIQAKNGYLIFQTGSLDL
FT                 PINYEYHYLSVNLTKTENTYEELIKQAQIFETLQQIQYLTEKLNREMNGIR
FT                 IAKRSKRGLANFIGTMYKYLFGTLNQEDKEELQQQIGDISKNNVQVSELNH
FT                 VIDAINKGIELTNHLNSNFEGEQMLALVIFNLQQFTEYIEDIELGLQLTRL
FT                 GIFNPKLLKHDSLTHVNSEKILNIKTSAWLKSDTNEILIISHIPREIIKTP
FT                 VFEIIPYPDENSNILTETIHDKYFLHNNQTYTASSQSLVINKCITGILNQL
FT                 STQCRYSKTHSDFEIKYVEPNIITTWNLPKTILNQNCINREIIIEGNNMIK
FT                 TFNCSVQLEDILISNTMLDYTQTIYVNNNVTKLEPLEYIHTKEIIEQHNQT
FT                 NNIFQIITLTALIILVIIVALYFIYKYKTIPQKLIVKFKNQTPENETIIHP
FT                 ETENVVPQVNTPVLYPTISA"
FT   CDS           join(1148..2794,2798..4636)
FT                 /product="Phanio_DEr-I_2p"
FT                 /translation="PIQNGHKRKFSSTSLGIRKRSRGVGNPFLKIKLNNIT
FT                 LKCLVDTGSSINIMKQNFFNFPIKFSKMKVHTINGTIVLNQSVSLHSSKLC
FT                 PTKQTFFIHNFSEKYDLLLGRNYLESTNTQINYSTQTVNINGYPFKMWYDH
FT                 IQKDESKVTNEYSKSSNLEETPLHTPKKEKSLRKIKRKPHLKPDEPKPSNL
FT                 EESKTTNECPKSSESEENPLITPYIEEALLVTSSNYALNDELRESNVFRLE
FT                 HLNTEEREQLSHVLLEYSDIQYKEGENFTFTSTIKHSIHTKHEDPIYKKPY
FT                 KYPQAFDQEVNKQINEMIEQKIIRKSKSPYCSPIWIVPKKSDASGKPKFRL
FT                 VIDYRSLNEITIDDKFPIPVMDEILDKLGRCQYFTTIDLAKGFHQIQMDQQ
FT                 SIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLD
FT                 DIIVYSTSLEEHIMSLKRVFDKLRSANLKLQLDKCEFLKKETEFLGHIITT
FT                 DGIKPNPNKIKAIVNFPIPKTTKGIKSFLGLCGFYRKFIPNFAKIAKPMTL
FT                 KLKRATINTKDNDYMSAFEKLKVLITSDPILIYPNFEKKFSLTTDASNIAI
FT                 GAVLSQEHKPICYASRTLNEHELNYSAIEKELLAIVWATKYFRSYLFGRKF
FT                 DILSDHRPLVWLNNIKDPNMKLQRWKIKLNEYDYNIQYLPGKENHVADALS
FT                 RIQIQENFLGEDDPISLPTAATIHSASEDNQNHIPITERPLNYYNRQFEFI
FT                 KDNFDDVQIIKYFHKTRIKISYKEMTDTLAKDLIKEYFCNKKSVIYFPNEI
FT                 DFQIFQNAYIQIISPDNFTKTMKTSNKLIDIQTYAQFKEIILKTHKEYLHP
FT                 GIEKLTLQFKELYYYPDYQKLIQNIINECEICNIAKTEHRNTKLTIETTPE
FT                 TFNPRDKYVIDFYLINNKQFLSCIDIYSKYASLIEVNSRDWLEAKRAILRI
FT                 FNDMGKPIEIKADKDSAFMCVALKLWLDSEGVTLNITTSKNGISDIERFHK
FT                 TVNEKLRIISSENEPENQFTKFEKILYVYNHKTKHNTTGRTPADIFIFAGT
FT                 PCYNTQENKVNKINKLNETRQDFNIDTNFRESPLVRSKTTNPFKKTGNLRQ
FT                 IDEKHFEETNRGRKIIHYKSKFKKKKKINKSKYNNDNSRPTPEHDTHVMPP
FT                 IDN"
XX
SQ   Sequence 6030 BP; 2493 A; 1239 C; 794 G; 1504 T; 0 other;
     ggcgcagccg gtaggataaa aagaaaaagt tgtacgactc gtttacaaat atcaatctag        60
     tgacaaaaga tccttgtacg accaagcgta tcttttaatg attgaaccac gcgaatcggc       120
     gctaagtgaa cgtaaatcgt aatacaataa aactcttttt atccgcaaaa gaactacgta       180
     taatcggtgg ttgtcacaca atagtcaacc tactgcatac gattaataaa agtgtaaaaa       240
     caaaaaacca aaaaactcta cagaaacaaa aatcaaccat ggcaaccgaa caaatccaac       300
     tattatcaga atcccacttg aatcaagcct taaatcaaat taggcaaata ccttcattca       360
     gtggagacac ccaagagctc agtgccttta tacgaaggat agagttcata ctccaactgt       420
     atccaacaac ggaccccagg caaaaacatg tattcttcag cgcaatagag atgcagcttg       480
     caggagatgc ccaacgagtg tcacaattat ctggagcaac aacctggccc accctaatga       540
     acgcacttat cagcgaatat aaaacacaaa caccatgtga agaattactc cgtcgcctct       600
     acaatacacc cttcaacgga agtatccgta agttcgtcga agaattagaa gtcaaatcat       660
     tcacaatatc aaataagctt atgttagaaa ataacgttaa taacacctta ttatacacaa       720
     atgcattaaa taacacagtt aaagatgtga tcatgagaaa attgcccgat aggttattta       780
     tgacccttgc tagacatgac ataacgacag tatctaagct caaacaaata gctcaacaag       840
     aaggtgtata cgaaataacc ttcaatgacc gaacgaaaca ccaaaataac tccaatccta       900
     acacaaatcc accccaaact tctaagaata aaggaaatta tcaaaatttc gcgaattatg       960
     ttatgcacaa cacaaataaa tcaaatccca acaataattc aaaacctatc gtatcaaacc      1020
     agcaggttat gcatgaattt aaacaaaagc taaatcaggg tagagcccag aaccctttaa      1080
     attacccaca acataatagt aaggcaccaa accctcccgt caaacggcag agagaaagtg      1140
     ctagtgacca atacaaaatg gacacaagcg aaaattttct tcaaccagcc tcggaatcag      1200
     aaagcgatcc agaggagtag gtaatccatt cctaaaaatt aaactaaata atattactct      1260
     caaatgccta gtagacactg gttcgtctat caatattatg aaacaaaatt tctttaattt      1320
     cccaataaaa ttctctaaaa tgaaagtcca cactatcaat ggcactatag tattgaacca      1380
     aagcgtttca ttgcattcaa gcaaactttg tccgactaaa caaacattct ttattcacaa      1440
     tttctcagaa aaatatgatc tactattagg cagaaactac ttagagtcaa ccaacactca      1500
     aattaactat tcaacacaaa cagtcaacat aaatggctac ccatttaaaa tgtggtacga      1560
     tcacatccaa aaagatgagt caaaagttac caatgagtac tccaagtcat ctaacctaga      1620
     ggaaactcct ctacataccc caaaaaagga aaaatccctc cgtaaaatta agcggaaacc      1680
     ccacttaaaa ccagatgagc caaagccatc caatctagaa gaatccaaga ctaccaatga      1740
     gtgtcccaaa tcttctgaat ctgaggaaaa ccctcttatt accccttaca tagaagaagc      1800
     ccttctagta acatcctcta actacgcctt aaacgacgag ttaagagaat ccaacgtatt      1860
     cagattagaa catctaaata cggaagaaag ggaacaactt tcacacgttt tgctcgaata      1920
     tagtgatatt cagtacaaag aaggtgaaaa ttttaccttc acaagtacga ttaaacactc      1980
     tattcataca aagcacgaag accctatcta taaaaaacca tataaatacc cccaagcatt      2040
     tgaccaagaa gttaataaac aaatcaacga aatgatagaa caaaaaataa ttaggaaatc      2100
     aaaatctccc tattgttctc caatttggat tgtcccaaag aaaagcgatg cttctggcaa      2160
     accaaaattt cgattagtca tagactatcg tagcctcaat gaaataacca ttgacgacaa      2220
     attccctatt cctgtaatgg acgaaatatt agacaagctt ggacgctgtc aatacttcac      2280
     aaccattgat ctagctaaag gtttccatca aattcaaatg gaccaacagt caatacccaa      2340
     aaccgcattc tcaacaaaac atggacatta cgaatatact cgtatgcctt tcggtttgaa      2400
     aaatgcacca gcaacctttc aacgttgcat gaataacctt ctagaagatt taatctataa      2460
     ggattgttta gtctacttag atgatattat cgtttactcc acttcactag aggaacacat      2520
     aatgtcattg aaaagggtat ttgataagct acgatcagca aatctaaaat tgcaacttga      2580
     taaatgtgaa tttctaaaga aagaaacaga atttctcggt cacattatca cgacagacgg      2640
     tataaaacca aaccctaaca aaataaaggc aattgttaac tttcctatcc caaaaactac      2700
     aaaaggaata aaatctttcc ttggactctg cggattctac cgtaagttca ttcccaattt      2760
     tgcaaaaata gcaaaaccca tgacacttaa attgtaaaaa agagcaacaa ttaacacaaa      2820
     agataatgac tacatgtccg ccttcgagaa acttaaagta ctcattacgt ccgatccgat      2880
     cctaatatat cctaacttcg aaaagaaatt ctcattaacg acagacgcaa gtaatatagc      2940
     tataggcgct gtattatctc aagaacacaa acctatttgt tatgcaagca gaactctaaa      3000
     cgaacacgaa cttaactatt cagcaataga aaaagaacta ttagctatag tatgggcaac      3060
     aaaatatttc agatcttacc tattcggtag aaaattcgac atattaagcg atcataggcc      3120
     acttgtatgg ctaaacaata taaaagaccc taacatgaag ttacagagat ggaagataaa      3180
     acttaacgaa tacgattata atatccaata cctacctggt aaagaaaatc atgtcgcgga      3240
     tgctctatcc agaattcaaa ttcaagaaaa cttcctagga gaagatgatc caatctccct      3300
     tcccacagca gctactatac atagtgcatc agaagataac caaaatcaca ttccaataac      3360
     agaaagaccc cttaattatt ataacagaca attcgaattc ataaaagaca attttgacga      3420
     cgtccagata ataaaatatt tccacaaaac tagaataaaa atcagttata aagaaatgac      3480
     cgacaccctt gctaaagact taattaaaga atacttctgt aataagaaaa gtgttattta      3540
     cttccctaat gaaatcgact ttcagatatt tcaaaatgct tatattcaaa tcataagtcc      3600
     cgacaatttc actaaaacca tgaaaaccag taacaaacta atagacattc aaacatatgc      3660
     ccaattcaaa gaaatcattc ttaaaacaca taaagaatat ttacaccctg gcatagaaaa      3720
     actaacactt cagttcaaag aactttatta ttaccccgat taccaaaagc ttatccaaaa      3780
     catcataaat gaatgtgaaa tctgtaacat cgctaaaacc gaacatagaa acacaaaatt      3840
     aactatcgaa acaaccccag aaacctttaa ccccagagac aaatatgtca tagacttcta      3900
     cttaataaac aataaacaat tcctatcatg tattgacatt tattctaaat acgcctccct      3960
     gatagaagta aatagtagag actggcttga agctaaaaga gctattttac gtatattcaa      4020
     cgacatgggt aaacccatag aaataaaagc cgacaaagac tccgctttca tgtgcgtcgc      4080
     acttaaactc tggttagatt cagaaggagt aaccttaaac ataacgacaa gtaaaaatgg      4140
     aatttctgac atcgagagat ttcataaaac cgttaatgaa aaattaagaa taatatcaag      4200
     cgaaaatgaa cccgaaaacc aattcacaaa attcgaaaaa atactttacg tatacaatca      4260
     caaaacaaaa cacaacacaa ctggtcgaac accagcagac atttttattt ttgcaggaac      4320
     cccttgctat aacacacaag aaaataaagt gaacaaaatt aacaaactca atgaaactag      4380
     acaagacttt aatatagaca ccaatttcag agaatcccct ctagttagat caaaaacgac      4440
     taacccattc aaaaagacag gaaatttaag acaaatagac gaaaaacatt ttgaggaaac      4500
     aaatagaggt agaaaaataa tacactataa atctaagttt aaaaagaaaa agaaaattaa      4560
     taaaagtaaa tataataacg ataattccag gcctactccc gagcatgata ctcatgttat      4620
     gcctcctatc gacaattaac acacaatact tagaagtaac acctatccag gccaaaaacg      4680
     gttacctaat ctttcaaacc ggatcattag atttaccaat aaactatgaa tatcactact      4740
     tatctgttaa tttaactaaa accgaaaata cttatgaaga acttatcaag caagctcaaa      4800
     tctttgaaac tctacaacaa attcagtatc taacagaaaa acttaacaga gaaatgaacg      4860
     gtataagaat tgcaaaacgt agtaaacgcg gtctcgctaa ttttatagga acaatgtaca      4920
     aatacttatt cggcacctta aaccaagaag ataaagaaga attacaacaa caaataggtg      4980
     acatctctaa aaataatgta caagtaagcg aactcaacca cgtaatagat gccattaata      5040
     aaggaattga attgaccaat catctaaata gtaactttga aggagaacaa atgttagcct      5100
     tagtaatttt caacctacaa caattcactg aatacataga agacatagaa cttggtttgc      5160
     aactgacacg cttaggtatc tttaacccaa aacttttgaa acacgattca ttaacacacg      5220
     tcaattctga aaaaatcctt aatattaaaa cttctgcttg gcttaaatct gatacgaacg      5280
     aaattctgat aatatcccac attccgagag aaataattaa aacaccagtt tttgaaataa      5340
     taccataccc agacgaaaac agtaacatac tgactgaaac aatacatgac aaatattttt      5400
     tacacaataa tcaaacttac acagcaagtt cccaaagctt ggtcataaat aaatgtataa      5460
     caggtatact aaaccaactc tcaacacaat gtagatacag taaaacacat tctgattttg      5520
     aaataaaata tgtagaacct aatataatta caacttggaa ccttcccaag actattttaa      5580
     accaaaattg tattaataga gaaattataa tagaaggtaa caatatgata aaaacattta      5640
     attgttccgt tcaattagaa gatatattaa ttagcaacac aatgttagat tacactcaaa      5700
     ctatctatgt aaataataac gtaacaaaac ttgaaccact agaatacatt cacacaaaag      5760
     aaataatcga acaacacaat cagacgaata atatctttca aataataaca cttacagcat      5820
     taatcatact agttataatt gttgcattgt actttattta taaatataaa actatacccc      5880
     aaaaattaat tgtaaaattc aaaaatcaaa ccccagaaaa cgaaactatt atacaccctg      5940
     aaacagaaaa cgttgtaccc caggtaaata cccctgtatt gtaccctaca ataagcgcct      6000
     gaggacaggc ttttttctta aggatgggga                                       6030
//
ID   Phanio_DEr-LTR repbase;    DNA;    INV; 657 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phanio_DEr-LTR.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-657
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 657 BP; 222 A; 171 C; 85 G; 179 T; 0 other;
     agtaacatat ccattattac acccacaact ccccataaga taactataag caacatacac        60
     tagtataagc tcatatacac acattaatgt ataaacacaa aatatctaag tctaagcaca       120
     aaatgtaatc aaagaacgag agcccttcga ttaaccttgg acacagcgtc atgttccaaa       180
     gccacccttt ctcacagatc gcaaatcgta aacatagaca cttgccgcct ttataaacac       240
     cgactctcgt cccctaatca tttgcattcg accacttggc gagccaactg aaataataaa       300
     ctttcgcgat cggcgcctac gcctacgcac ttgtcccagg attctccaat tacccctatt       360
     cttcagaaga ctctcttcta acaagaaaat agaggtttac aaccaaactc tcttaaactt       420
     cgctctttgg cttccccaaa ttgcctataa aacagcaagc atgcctccat gcagcagttc       480
     agtactgagt acgttatcaa ccgcgataac accgcttaag ccaatttaac tttccaatct       540
     cgtgataatc aaatggctct agttctttcc ataaatggaa ttaataaaaa ggtttaataa       600
     aatataaaac tcaatcgtgt gtttttttta tcaaaccctc ggtctgaatt cgtaaat          657
//
ID   Phanio_DSe-I repbase;    DNA;    INV; 6169 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phanio_DSe;
KW   Phanio_DSe-I.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6169
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           280..1236
FT                 /product="Phanio_DSe-I_1p"
FT                 /translation="MATEQVKLLSESHLNQALSQIRQIPIFSGNTQELSAF
FT                 IRMIEFILQLYPSTDIRQRHVFFSAIEMQLAGDAQRVSQLSGATTWPTLMN
FT                 ALISEYKTQTPCEELLRRIYNTPFNGSIRKFVEELEIKSFTISNKLMLEND
FT                 VNNTVLYTNALNNTIKDVITRKLPDRLFMTLARFDITTVSKLKQIAQQEGV
FT                 YEITFNDRTRPQNYSDPNKIQPQTSKNKGNYQNFVSNAMHNTIKSNPSTTP
FT                 RPCEPNPRLAREFTQKLNTGRAQNPLNFQQRNNSAPNPPVKRQRESDSAQY
FT                 RMDTGCENFLQPASESESDLEEEETHS"
FT   CDS           4720..6138
FT                 /product="Phanio_DSe-I_3p"
FT                 /translation="MIIPGLLPSMILMLCLLSTINTQYLEVTPIQAKNGYL
FT                 IFQTGSIDLPINYEYHYLSINLTKTENTYEELIKQTQHFNNSPQIRYLVEK
FT                 LNREMNGIRIVKRSKRGLVNFIGTIYKYLFGTLDQEDKEELQQKIADISKN
FT                 NVQASELNHVIEVINQGIELTNHLNNNFEGEQMINLIIFNLQQFTEYIEDI
FT                 ELGLQLTRLGIFNPKLLKHDSLIHVNSEKLLNIKTSAWLKSDTNEILIISH
FT                 IPREITKTPVFKIIPYPDGKSYILTETIHDKYFSHNNQTYTASSQSLVVNK
FT                 CIIGILNQAPTQCRYSKTHSDFEIKYVEPNIITTWNLPKTILNQNCINRET
FT                 IIEGNNMIKAFNCSVQLEEILITNTMLDYTQTIYVNNNVTKLESLEYIQAK
FT                 EIIKQHNQTNNIFQIITLATLIMIVIIVILFFIYKYKTIPKKLIVKFKNQT
FT                 LKNENIISPETDNTAPPNTPILYPTLNA"
FT   CDS           join(1170..2645,2649..4778)
FT                 /product="Phanio_DSe-I_2p"
FT                 /translation="MRKFSSTSLGIRKRFRGGGNPFLKITMNNITLKCLVD
FT                 TGSSINIMKQNFFNFPIKPSKVKVHTINGIITLNQSVSLQSSKLCPIKQTF
FT                 YIQNFSERYDLLLGRNYLEPTNTQINYSTQTVTINGYTFKMWYDHIQIDES
FT                 KVTNECPKSSNSEETPQHTPKKEKTLQKIKRKPHLKSDESKVTNECLRSFN
FT                 SEETPLHMQKKEKNLQKIKRKHHLKTDESASNQCPRSSNPEESKTTYECPK
FT                 TSTSEENPLITPYIEEALLVTSSNYALDDELRESNVFRLEHLNTEEREQLS
FT                 HVLLEYRDIQYKEGETLTFTSTIKHSIHTKHEDPIYKKPYKYPQAFDQEVN
FT                 RQINEMIEQKIIRKSKSPYCSPIWIVPKKSDASGKPKFRLVIDYRSLNEIT
FT                 IDDKFPIPVMDEILDKLGLCQYFTTIDLAKGFHQIQMDKQSISKTAFSTKH
FT                 GHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIIYSTLEEH
FT                 IMSLKKVFDKLRLANLKLQLDKCEFLKKETEFLGHIITTDGIKPNPNKINA
FT                 IINFPIPKTTKGIKSFLGLCGFYRKFIPNFAKIAKPMTSKLKKGALIDTKD
FT                 NDYMSAFEKLKVLITSDPILIYPNFEKKFSLTTDASNIAIGAVLSQEHKPI
FT                 CYASRTLNEHELNYSAIEKELLAIVWATKYFRSYLFGRKFDILSDHRPLVW
FT                 LNNIKDPNMKLQRWKIKLNEYDYNIQYLPGKENHVADALSRVQIKENFLGE
FT                 DDPASLPTAATVHSAQEDNQNHISITERPLNYYNRQFEFIKDNFDDVQIIK
FT                 YFHKTRIKISYKEMTDTLAKDIIKEYICSKKSVIYFPDEIDFQIFQNAYIQ
FT                 IISPDSFTKTMKTSTKLIDIQTYAQFKEIILKTHKELLHPGIEKLTLQFKE
FT                 LYYYPDYQKLIQNIINECEICNIAKTEHRNTKLIIETTPESFSPREKYVMD
FT                 FYLVNNKQFLSCIDVYSKYASLIEVNSRDWLETKRAILRIFNDMGKPMEIK
FT                 ADKDSAFMCIALKIWLQSEGVTLNVTTSKNGISDVERFHKTVNEKLRIITS
FT                 ENEPENQFTKFEKILYIYNHKTKHNTTGRTPADIFIFAGTPAYNTQQNKVN
FT                 KIDKLNENRHDFNIDTNFKESPLVRSKTTNPFKKTGNIRQIDDKHFEETNR
FT                 GRNITHYKSKFKKKKKINKSKYNNDNSRLTPEHDTHVMPPIDN"
XX
SQ   Sequence 6169 BP; 2532 A; 1242 C; 838 G; 1557 T; 0 other;
     ggcgcagtcg gtaggataaa tagaaaaaag ttgtgcgagt tgtttacaat tatcaatcta        60
     gtgacaaaag atccttgtac gaccaagcgt atcttttaag attgaaccac gcgaatcggc       120
     gctaagtgaa cataatatcg taatacaatt tactcttttt atccgcaaaa gaactacgta       180
     taatcggtgg ttgacacata atagtcaaac ctactgcata cagttaatga aagtgtaaaa       240
     acaaaaaaca aaaaataaat aataataaaa tcaacaacca tggcaaccga gcaagtaaaa       300
     ctattatcgg aatcccatct taatcaagcc ttaagccaaa ttaggcaaat accaatattc       360
     agcggtaata cccaagaact cagtgccttt attcgaatga ttgagttcat acttcagctc       420
     tatccatcaa cggacataag gcaaaggcat gtattcttca gcgcaattga gatgcaactt       480
     gcaggagatg ctcaacgtgt atcccagtta tccggagcaa caacctggcc aacccttatg       540
     aacgcgctca tcagcgagta taaaacccaa acaccatgtg aagaactact ccgtcgtatt       600
     tacaacacac ccttcaacgg aagtatccgt aagttcgtcg aagagttaga aataaaatca       660
     ttcacaatat cgaataaact tatgttagaa aatgatgtca ataatactgt attatacaca       720
     aatgcattaa ataatacgat caaagatgta atcacgagaa aattgccaga taggttattt       780
     atgactcttg ctagatttga cattacgaca gtatctaaac tcaaacaaat agcgcaacaa       840
     gaaggcgtat acgaaataac tttcaatgac agaacaagac cccaaaatta ttccgatcct       900
     aacaaaatcc aaccccaaac ctctaagaat aagggaaact atcaaaattt cgtgagcaat       960
     gctatgcata acacaattaa gtcaaatcca agcactactc cgagaccctg cgaaccaaat      1020
     ccaaggttag caagagaatt cacacaaaaa ttaaatacag gtagagccca gaatccatta      1080
     aattttcaac aaagaaataa tagtgcccca aaccctcccg tcaaacgaca gagagaaagt      1140
     gatagtgccc aatacagaat ggatacagga tgcgaaaatt ttcttcaacc agcctcggaa      1200
     tcagaaagcg atttagagga ggaggaaacc cattcttaaa aattacaatg aataatatta      1260
     ctctcaaatg cttagtagac actggttcgt caattaatat tatgaaacaa aatttcttta      1320
     atttcccaat caaaccttct aaagttaaag tccacactat taatggcatt ataacattga      1380
     atcaaagcgt ttcattgcag tcaagcaaac tctgtcctat taaacaaaca ttctatatac      1440
     aaaacttttc agaaagatat gacttactat taggcagaaa ctatttagaa ccaactaaca      1500
     ctcagattaa ttattcaaca caaacagtca ctataaatgg ctacacattt aaaatgtggt      1560
     acgaccacat ccaaatagat gagtccaagg ttaccaatga gtgcccaaag tcatctaact      1620
     cagaggaaac cccccaacat accccaaaga aggagaaaac cctccagaaa attaagcgga      1680
     aaccccactt aaaatcagat gagtcaaagg ttaccaatga gtgcctcaga tcattcaatt      1740
     cagaggaaac ccctctacat atgcaaaaaa aggagaaaaa cctccagaaa attaaacgga      1800
     aacaccactt aaaaacagat gaatcagcct ccaatcagtg ccctagatca tctaacccag      1860
     aagagtccaa gactacctat gagtgtccca aaacttctac atctgaggaa aaccctctta      1920
     ttaccccata catagaagaa gcccttctag taacatcctc taactacgcc ttagatgacg      1980
     agttgagaga atctaacgta tttagattag aacatctaaa tacagaagaa agggagcaac      2040
     tttcccacgt tttgcttgaa taccgtgata ttcaatacaa agaaggtgaa actttgacct      2100
     tcacaagtac gattaaacat tccattcata caaaacacga agaccctatt tataaaaaac      2160
     catataaata cccccaagcg tttgatcaag aagtcaacag gcaaatcaac gaaatgatag      2220
     aacaaaaaat aattaggaaa tctaagtccc cctattgttc tcccatttgg attgtgccaa      2280
     agaaaagtga tgcttctggt aaaccaaaat ttcgattagt catagactat cgtagtctca      2340
     atgaaataac cattgacgac aaattcccta ttccagtaat ggacgaaata ttagacaagc      2400
     ttggactctg tcaatacttc acaaccattg atttagctaa aggtttccat caaattcaaa      2460
     tggacaaaca atcaatatcc aaaacagcat tttcaacaaa acatggacat tacgaataca      2520
     ctcgtatgcc ttttggtctg aaaaatgcac cagcaacatt tcaacgctgc atgaacaatc      2580
     ttctagaaga cttaatttat aaagattgtt tagtttattt agatgatatt atcatttatt      2640
     ccacttgatt ggaagaacac ataatgtcac taaaaaaagt atttgataaa ctacgattag      2700
     ccaatctaaa attgcaactt gataaatgtg aatttctgaa gaaagaaaca gaatttctcg      2760
     gtcacattat cacaacagac ggtataaaac caaaccctaa caaaataaat gcaattatta      2820
     attttcctat tcctaaaacc acaaaaggaa taaaatcatt ccttggactc tgcggattct      2880
     accgtaagtt cattcccaat tttgcaaaaa tagcaaaacc tatgacgtcc aaattaaaga      2940
     aaggagcgtt aattgacaca aaagataatg attacatgtc cgccttcgag aaactaaaag      3000
     tactcatcac gtccgatcca atcctaatat atcccaactt cgaaaagaaa ttttcactga      3060
     caacagacgc tagtaatata gccataggtg ctgtattatc ccaagaacat aagcccatct      3120
     gctatgcaag cagaactcta aacgaacacg aacttaacta ttcggctata gaaaaagaac      3180
     tattagctat agtatgggca acaaaatatt tcaggtccta cctattcggt agaaagttcg      3240
     acatattaag tgatcataga ccacttgtat ggctaaataa cataaaagat cccaatatga      3300
     aattacagag atggaagata aaacttaacg aatacgatta taatattcaa tatctacccg      3360
     gtaaagaaaa tcatgtagcc gacgctctat ctagagtcca gattaaggaa aacttcctag      3420
     gagaagatga cccagcttcc ctgcctacag cagctactgt acatagtgca caagaagaca      3480
     accaaaatca tatttcaata acagaaagac ctcttaatta ttataacaga caattcgaat      3540
     tcataaaaga caattttgac gacgtccaaa taataaaata tttccataaa accagaatta      3600
     aaatcagtta taaagaaatg actgataccc ttgctaaaga tatcattaaa gaatacattt      3660
     gctctaagaa aagtgttatt tactttcctg atgagatcga ctttcaaata tttcaaaatg      3720
     cgtatattca aatcataagt cccgacagtt tcactaaaac tatgaaaacc agcacaaaac      3780
     taatagacat tcaaacatac gcccaattca aagaaatcat tctcaaaaca cataaagaat      3840
     tattacaccc tggtatagaa aaactcacac ttcagtttaa agaactttac tattaccctg      3900
     attaccaaaa acttatccaa aacatcataa acgaatgtga aatctgtaac atcgctaaaa      3960
     ctgaacatag aaacacaaaa ttaatcattg aaacaacccc agaatccttt agccccagag      4020
     aaaagtatgt catggatttt tacttagtaa acaataaaca attcctatca tgcattgacg      4080
     tttattctaa atacgcctcc ctgatagaag taaatagtag agattggctt gaaactaaaa      4140
     gagctatttt acgcatattc aacgatatgg gtaaacccat ggaaataaaa gccgacaaag      4200
     actccgcctt catgtgcatc gcacttaaaa tttggttaca atcagaagga gtaactttaa      4260
     atgtaacaac aagtaaaaat ggaatctctg acgttgagcg atttcataaa accgttaatg      4320
     aaaaattaag aataataaca agcgaaaatg aacctgaaaa ccaattcaca aaatttgaaa      4380
     aaatacttta catttacaat cacaaaacaa aacacaacac aactggtcga acaccagcag      4440
     acatcttcat ttttgcagga acccccgcct ataacactca acaaaataaa gtaaacaaaa      4500
     ttgacaaact caatgaaaat agacacgact ttaacataga cacaaacttc aaagaatccc      4560
     ctctagttag atcaaaaacg actaacccat tcaaaaagac aggaaatata agacaaatag      4620
     atgataaaca tttcgaagaa acaaatagag gtagaaatat aacacactat aagtctaagt      4680
     ttaaaaagaa aaagaaaatt aataaaagta aatataataa tgataattcc aggcttactc      4740
     ccgagcatga tactcatgtt atgcctccta tcgacaatta acacacaata cctagaagta      4800
     acccctatcc aggccaaaaa cggttaccta atctttcaaa ccggatcaat agatttaccg      4860
     ataaactacg aatatcatta cttatctatt aacttaacta aaacagaaaa tacttacgaa      4920
     gaacttatta aacaaactca acattttaat aactcaccac aaatacggta tctagtagaa      4980
     aaacttaaca gagaaatgaa cggtatacga attgtaaaac gtagtaaacg cggtcttgtt      5040
     aactttatag gaacaattta caaatactta ttcggtacct tagatcaaga agataaagaa      5100
     gagttacaac aaaaaatagc cgacatctct aaaaacaatg tacaagcaag cgaacttaac      5160
     cacgtaatag aagtcattaa ccaaggaata gaattgacca accatttaaa taataacttt      5220
     gaaggagaac aaatgataaa tctaataatt ttcaacttac aacaattcac tgaatacatt      5280
     gaagacatag agcttggttt gcaactgaca cgcttaggta tctttaatcc aaaactttta      5340
     aaacacgatt cattaatcca cgtcaattca gaaaaacttc ttaatattaa aacttcagct      5400
     tggcttaaat ctgatactaa cgaaatcctg ataatatccc acattccaag agaaataacc      5460
     aaaacacccg tttttaaaat aataccctac ccagacggaa aaagttacat actaaccgaa      5520
     acaatacatg acaaatattt ttcacacaat aatcaaacat acacggcaag ttctcaaagc      5580
     ttagttgtaa ataaatgtat aattggtata ctaaaccagg ccccaacaca atgtagatac      5640
     agtaaaacac attctgattt tgaaataaaa tatgtagaac ctaatataat cacaacttgg      5700
     aaccttccca agactatcct aaaccaaaac tgtatcaata gagaaactat aatagaaggc      5760
     aataacatga taaaagcatt taattgttcg gtccaattag aagaaatatt aattaccaac      5820
     acaatgttag actatactca aactatctat gtaaacaata atgtaacaaa acttgaatca      5880
     ctcgaataca tccaggcaaa agaaataatc aaacaacaca atcagacgaa taatatcttt      5940
     caaataataa cacttgcaac attaatcatg atagttatta ttgtaatatt gttctttatc      6000
     tataaatata aaactatacc caaaaagtta attgtaaaat ttaaaaatca aacgctaaaa      6060
     aatgaaaata ttataagtcc tgaaacagac aatactgcac ccccaaatac ccctatattg      6120
     taccctactc taaacgcctg aggacaggct tttttcttaa ggatgggga                  6169
//
ID   Phanio_DSe-LTR repbase;    DNA;    INV; 644 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phanio_DSe;
KW   Phanio_DSe-LTR.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-644
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 644 BP; 211 A; 170 C; 88 G; 175 T; 0 other;
     agtaacatat ctacacccac aactcctcaa tcacaaccac acacactatt gtaaacaatc        60
     acacacacac attattgtct aagtacgaaa tgtatccaaa gatcgagagc ccttcgatta       120
     tgcttagctt tcatttacgc acagcaaaag cgcagaagtc cgaagtccaa agtctagact       180
     ctggggcgag ccaatgtcca cgtcccctaa acattcgatc acttggcgag ccaactgaaa       240
     taacaagagc caactgaaat aacaaaagct tccgcccaca caattgtctc aggattctca       300
     aattactcct atttttcgga ctcctctctt aacgggagaa tagacacctc tctttccggg       360
     agaatagaca ttgataactt tattctctta aacttcgctc ttaagctatc ccaatccgcc       420
     tatatgaacc caaacatgtc cccatacatc agttcagttc tgagtacgtt atcaatcgcg       480
     ataacatcgc taagcccact tcaacctcga agtccattat ccaacctagc gataatctaa       540
     aggctctagt tcttccttta ttggaaataa taaaacgttt aataataaat aaaaaacctc       600
     ctgagttctt ttttttatta aacactcggt ctgaattcgt aaat                        644
//
ID   Phanio_DSim-I repbase;    DNA;    INV; 6159 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.08, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_DSim-I;
KW   Phanio_DSim; Phanio_DSim-I.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-6159
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1502-1502 (2012).
XX
RN   [3]
RP   1-6159
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [3] (Consensus)
XX
CC   Replaced by the sequence Phanio_DSim from Ref[3]; renamed
CC   accordingly.
XX
FH   Key           Location/Qualifiers
FT   CDS           270..1226
FT                 /product="Phanio_DSim-I_1p"
FT                 /translation="MATEQVKLLSESHLNQALSQIRQIPIFSGNTQELSAF
FT                 IRRIEFILQLYPSTDIRQKHVFFSAIEMQLAGDAQRVSQLSGATTWPTLMN
FT                 ALISEYKTQTPCEELLRHIYNTPFNGSIRKFVEELEIKSFTISNKLMLEND
FT                 INNTVLYTNALNKTIKDVIMRKLPDRLFMTLARFDITTVSNLKQIAQQEGV
FT                 YEITFNDRTRSQNYSDHNKTQPQTSKNKGNYQNFVSNAMHNTIKSNPSTTP
FT                 KPCEPNPKFARELTQKLNTGRVQNPLNFQQRNNSAPNPPVKRQRESDSAQY
FT                 RMDTGCENFLQPASESESDLEEEETHS"
FT   CDS           1160..4768
FT                 /product="Phanio_DSim-I_2p"
FT                 /translation="MRKFSSTSLGIRKRFRGGGNPFLKITMNNITLKCLVD
FT                 TGSSINIMKQNFFNFPIKPSKVKVHTINGIIMLNQSVSLQSSKLCPIKQTF
FT                 YIQNFSEKYDLLLGRNYLEPTNTQINYSTQTVTINGYIFKMWYDHIQTDES
FT                 KAINECPKSSNSEETPLHTPKKEKTLRKIKRKPHLKSDESKVTNEYPRSSN
FT                 SEETPLHIQKKEKNIQKIKRKHHLKTDESASNQCPRSSNPEESKTTYERPK
FT                 TSKSEENPLITPYLEEALLVTSSNYALDDELRESNVFRLEHLNTEEREQLS
FT                 HVLLEYRDIQYKEGETLTFTSTIKHSIHTKHEDPIYKKPYKYPQAFDQEVN
FT                 RQINEMIEQKIIRKSNSPYCSPIWIVPKKSDASGKPKFRLVIDYRSLNEIT
FT                 IDDKFPIPVMDEILDKLGRCQYFTTIDLAKGFHQIQMDKQSISKTAFSTKH
FT                 GHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIIYSTSLEE
FT                 HIMSLKRVFDKLRLANLKLQLDKCEFLKKETEFLGHIITTDGIKPNPNKIN
FT                 AVINFPIPKTTKGIKSFLGLCGFYRKFIPNFAKIAKPMTSKLKKGTVINTK
FT                 DNDYMSAFEKLKVLITSDPILIYPNFEKKFSLTTDASNIAIGAVLSQEHKP
FT                 ICYASRTLNEHELNYSAIEKELLAIVWATKYFRSYLFGRKFDILSDHRPLV
FT                 WLNNIKDPNMKLQRWKIKLNEYDYNIQYLPGKENHVADALSRVQIKENFLG
FT                 EDDPASLLTTATVHSAQEDNQNHISITERPLNYYNRQFEFIKDNFDDVQII
FT                 KYFHKTRIKISYKEMTDTLAKNIIKEYICTKKSVIYFPDEIDFQIFQNAYI
FT                 QIISPDSFTKTMKTSIKLIDIQTYAQFKEIILKTHKELLHPGIEKLTLQFK
FT                 ELYYYPDYQKLIQNIINECEICNIAKTEHRNTKLILETTPESFSPREKYVM
FT                 DFYLVNNKQFLSCIDIYSKYASLIEVNSRDWLETKRAILRIFNDMGKPIEI
FT                 KADKDSAFMCIALKIWLESEGVTLSITTSKNGISDVERFHKTVNEKLRIIT
FT                 SENEPENQFTKFEKILYIYNHKTKHNTTGRTPADIFIFAGTPAYNTQQNKV
FT                 NKIDKLNENRHDFNIDTNFKESPLVRSKTTNPFKKTGNVRQIDDKHFEETN
FT                 RGRNITHYKSKFKKKKKINKSKYNNDNSRLTPEHDIHVMPPIDN"
FT   CDS           4737..6128
FT                 /product="Phanio_DSim-I_3p"
FT                 /translation="MIFMLCLLSTINTQYLEVTPIQAKNGYLIFQTGSIDL
FT                 PINHEYHHLSINLTKTENTYEELIKQAQHFNNSPQIQYLVEKLNREMNGIR
FT                 IVKRSKRGLVNFMGTIYKYLFGTLDQEDKEELQQKIADISKNNVQISELNH
FT                 VIEVINQGIELTNHLNNNFEGEQMINLIIFNLQQFTEYIEDIELGLQLTRL
FT                 GIFNPKLLKHDSLIHVNSEKLLNIKTSAWLKSDTNEILIISHIPREITKTP
FT                 VFKIIPYPDGKSYILTETIHDKYFSHNNQTYTASSQSLVVNKCIIGILNQV
FT                 PTQCRFSKTHSDFEIKYVEPNIITTWNLPKTILNQNCINRETIIEGNNMIK
FT                 AFNCSVQLEEILITNTMLDYTQTIYVNNNVTKLEPLEYIQAKEIIKQHNQT
FT                 NNIFQIITLATLIMIVIIVILYFIYKYKTIPQKLIVKFKNQTQKNENIISP
FT                 EKDNTAPPNTPVLYPTLNA"
XX
SQ   Sequence 6159 BP; 2531 A; 1238 C; 838 G; 1552 T; 0 other;
     ggcgcagtcg gtaggataaa tagaaaaagt tgtacgagtt gtttacaaat atcaatctag        60
     tgacaaaaga tccttgtacg accaagcgta tcttttaaga ttgaaccacg cgaatcggcg       120
     ctaaagtgaa cataatatcg taatacaatt aactcttttt atccgcaaaa gaactacgta       180
     taatcggagg ttgacacata atagtcaaac ctactgcata cggttaacga aagtgtaaaa       240
     acaaaaaaaa aaaaaaaaaa tcaacaacca tggcaaccga gcaagtaaaa ttgttatcgg       300
     aatcccacct taatcaagcc ttaagccaaa taaggcaaat accaatattc agcggtaata       360
     cccaagaact cagtgccttt atccgaagga tcgagttcat acttcagctt tatccatcaa       420
     cggacatcag gcaaaagcat gtattcttca gcgcaattga aatgcaactt gcaggagatg       480
     ctcaacgtgt atcccagtta tccggagcaa caacctggcc aacccttatg aatgcgctca       540
     tcagcgagta taaaacccaa acaccatgtg aagaactact tcgtcacatt tacaacacac       600
     ccttcaacgg aagtatccgt aagttcgtcg aagaattaga aataaaatca ttcacgatat       660
     cgaataaact tatgctagaa aatgatatca ataatactgt attatacaca aatgcattaa       720
     ataagacaat caaagatgta atcatgagaa aattgcccga taggttattt atgactcttg       780
     ctagatttga cattacgaca gtatctaatc tcaaacaaat agcgcaacaa gaaggcgtat       840
     acgaaataac tttcaatgac agaacaagat cccaaaatta ttccgatcat aacaaaaccc       900
     aaccccaaac ctctaagaat aagggaaact atcaaaattt cgtgagcaat gctatgcata       960
     acacaattaa gtcaaatcca agcactactc cgaaaccctg cgaaccaaat ccaaagtttg      1020
     caagagaact cacacaaaaa ttaaatacag gaagagtcca gaatccatta aattttcaac      1080
     aaagaaataa tagtgcccca aaccctcccg tcaaacgaca gagagaaagt gatagtgccc      1140
     aatacagaat ggatacagga tgcgaaaatt ttcttcaacc agcctcggaa tcagaaagcg      1200
     atttagagga ggaggaaacc cattcttaaa aatcacaatg aataatatta ctctcaaatg      1260
     cttagtagac accggttcgt caattaatat tatgaaacaa aatttcttta attttccaat      1320
     caaaccttct aaagttaaag tccacactat taatggcatt ataatgttga atcaaagcgt      1380
     ttcattgcag tcaagcaaac tttgtcccat taaacaaaca ttctatattc aaaacttttc      1440
     agaaaaatat gacttactat taggcagaaa ctatttagaa ccaactaaca ctcagattaa      1500
     ttattcaaca caaacagtca ctataaatgg ctacatattt aaaatgtggt acgaccacat      1560
     ccaaacagat gaatccaagg ccatcaatga gtgccccaag tcatctaact cagaggaaac      1620
     ccctctacat accccaaaaa aggagaaaac cctccggaaa attaagcgga aaccccactt      1680
     aaaatcagat gagtcaaagg ttaccaatga gtaccccaga tcatccaatt cagaggaaac      1740
     ccctctacat atacaaaaaa aggagaaaaa catccagaaa attaagcgga aacaccactt      1800
     aaaaacagat gagtcagcat ccaatcagtg ccccagatca tctaacccag aagagtccaa      1860
     gactacctat gagcgtccca agacttctaa atctgaggaa aaccctctta ttaccccata      1920
     cctagaagaa gcccttctag taacatcctc taactacgcc ctagatgacg agttaagaga      1980
     atctaacgta tttagattag aacatctaaa tacagaagaa agggagcaac tttcccacgt      2040
     tttgcttgaa taccgtgata ttcagtacaa agaaggtgaa actttgacct tcacgagtac      2100
     gattaaacat tccattcata caaaacacga agaccctatc tataaaaaac cgtataaata      2160
     ccctcaagcg tttgatcaag aagtcaacag gcaaatcaac gaaatgatag aacaaaaaat      2220
     aattaggaaa tctaattccc cctattgttc tccaatttgg attgtgccaa agaaaagtga      2280
     tgcttctggt aaaccaaaat ttcgattagt catagactat cgtagtctca atgaaataac      2340
     catcgacgac aaattcccta taccagtaat ggacgaaata ttagacaagc ttggacgctg      2400
     tcaatacttc acaaccattg atttagctaa aggtttccat caaattcaaa tggacaagca      2460
     atcaatatcc aaaacagcat tttcaacaaa acatggacat tacgaatata ctcgtatgcc      2520
     ttttggtctg aaaaatgcac cagcaacatt tcaacgctgc atgaacaatc ttcttgaaga      2580
     cttaatttat aaagattgtt tagtttattt agatgatatt atcatttatt ccacttcatt      2640
     ggaagaacac ataatgtctc taaaaagggt atttgataag ctaagattag ctaatctaaa      2700
     attgcaactt gacaaatgtg aatttctgaa gaaagaaaca gaatttctcg gtcacattat      2760
     cacaacagac ggtataaaac caaaccctaa caaaataaat gcagttatta attttcctat      2820
     tcctaaaacc acaaaaggaa taaaatcatt ccttggactc tgcggattct accgtaagtt      2880
     cattcccaat tttgcaaaaa tagcaaaacc tatgacgtcc aaattaaaga aaggaacagt      2940
     aattaacaca aaagataatg attacatgtc cgccttcgag aaactaaaag tactcatcac      3000
     atccgaccca attctaatat accccaactt cgaaaagaaa ttttcactga caacagacgc      3060
     tagtaatata gccataggtg ctgtattatc ccaagaacat aaacccatct gctatgcaag      3120
     cagaactcta aacgaacatg aacttaacta ttcggctata gaaaaagaac tattagctat      3180
     agtatgggca acaaaatatt ttagatccta cctattcggt agaaagtttg acatattaag      3240
     tgatcataga ccacttgtat ggctaaataa cataaaagat cccaatatga aattacagag      3300
     atggaagata aaacttaacg aatacgatta taatattcaa tatctacccg gtaaagaaaa      3360
     tcatgtagct gacgctctat ctagagttca aattaaggaa aacttcctag gagaagatga      3420
     cccagcttcc ctgctcacaa cagctactgt gcatagtgca caagaagaca accaaaatca      3480
     catttcaata acagaaagac ctcttaatta ttataacaga caattcgaat tcataaaaga      3540
     caattttgac gacgtccaaa taataaaata tttccataaa accagaatta aaatcagtta      3600
     taaagaaatg actgataccc ttgctaaaaa tatcattaaa gaatatattt gcactaagaa      3660
     aagtgttatt tactttcctg atgagatcga ctttcaaata tttcaaaatg cgtatattca      3720
     aatcataagt cccgacagtt tcactaaaac tatgaaaacc agcataaaac taatagacat      3780
     tcaaacatac gcccaattca aggaaatcat tctcaaaaca cataaagaat tattacaccc      3840
     tggtatagaa aaactcacac ttcagttcaa agaactttac tattaccctg attaccaaaa      3900
     acttatccaa aacatcataa acgaatgtga aatctgtaac atcgctaaaa ctgaacatag      3960
     aaacacaaaa ttaatccttg aaacaacccc agaatctttt agtcccagag aaaagtacgt      4020
     catggatttt tacttagtaa acaataaaca attcctatca tgcattgaca tttattctaa      4080
     atacgcctcc ctgatagaag taaatagtag agattggctt gaaactaaaa gagctatttt      4140
     acgcatattc aacgatatgg gtaaacccat agaaataaaa gccgacaaag actccgcctt      4200
     catgtgcatt gcacttaaaa tttggttaga atcagaagga gtaactttaa gtataacaac      4260
     aagtaaaaat ggaatctctg acgttgagcg atttcataaa accgttaatg aaaaattaag      4320
     aataataaca agcgaaaatg aacctgaaaa ccaattcaca aaatttgaaa aaatacttta      4380
     catttacaat cacaaaacaa aacacaacac aactggtcga accccagcag acatcttcat      4440
     ttttgcagga accccggcct ataacactca acaaaataaa gtaaacaaaa ttgacaaact      4500
     caatgaaaat agacacgact ttaacataga cacaaacttc aaagaatccc ctctagttag      4560
     atcaaaaacg actaacccat tcaaaaagac aggaaacgta agacaaatag atgataaaca      4620
     tttcgaagaa acaaatagag gtagaaatat aacacattat aagtctaagt ttaaaaagaa      4680
     aaagaaaatt aataaaagta aatataataa cgataattcc aggcttactc ccgagcatga      4740
     tattcatgtt atgcctccta tcgacaatta acacacaata cctagaagta acccctatcc      4800
     aggccaaaaa cggttaccta atctttcaaa ccggatcaat agatttaccg ataaaccacg      4860
     aatatcatca cttatctatt aacttaacta aaacagaaaa tacttatgaa gaacttatta      4920
     aacaagctca acattttaat aactcaccac aaatacagta tctagtagaa aaacttaaca      4980
     gagaaatgaa cggtatacga attgtaaaac gtagtaaacg cggtcttgtt aactttatgg      5040
     gaacaattta caaatactta ttcggtacct tagatcaaga agataaagaa gaattacaac      5100
     aaaaaatagc cgacatctct aaaaataatg tacaaataag cgaacttaac cacgtaatag      5160
     aagtcattaa ccaaggaatc gaattgacca accatttaaa taataacttt gaaggagaac      5220
     aaatgataaa tctaataatt ttcaatttac aacaattcac tgaatacatt gaagacatag      5280
     agcttggttt gcaactgaca cgcttaggta tctttaatcc aaaactttta aaacacgact      5340
     cattaatcca cgtcaattct gaaaaacttc ttaatattaa aacttcagct tggcttaaat      5400
     ctgatacgaa cgaaatcctg ataatatccc acattccaag agaaataacc aaaacacccg      5460
     tttttaaaat aataccctac ccagacggaa aaagttacat attaaccgaa acaatacatg      5520
     acaaatattt ttcacacaat aatcaaacat acacggcaag ttctcaaagc ttagttgtaa      5580
     ataagtgtat aattggtata ttaaaccagg tcccaacaca atgtagattc agtaaaacac      5640
     attctgattt tgaaataaaa tatgtagaac ctaatataat cacaacttgg aaccttccca      5700
     agactatcct aaaccaaaac tgtatcaata gggaaactat aatagaaggc aataacatga      5760
     taaaagcatt taattgttcg gtccaattag aagaaatatt aattaccaac acaatgttag      5820
     actatactca aactatctat gtaaacaata atgtaacaaa acttgaacca ctcgaataca      5880
     tccaggcaaa agaaataatc aaacaacaca atcagacgaa taatatcttt caaataataa      5940
     cacttgcaac attaatcatg atagttatta ttgtaatatt gtactttatc tataaatata      6000
     aaactatacc tcaaaagtta attgtaaaat ttaaaaatca aacgcaaaaa aatgaaaata      6060
     ttataagtcc tgaaaaagac aatactgcac cccccaatac ccctgtattg taccctactc      6120
     taaacgcctg aggacaggct tttttcttaa ggatgggga                             6159
//
ID   Phanio_DSim-LTR repbase;    DNA;    INV; 625 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 17.08, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 2)
XX
DE   LTR retrotransposon from fruit fly: long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy-4_DSim-LTR; Phanio_DSim-LTR.
XX
NM   Gypsy-4_DSim-LTR.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-625
RA   Jurka J.;
RT   "LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1503-1503 (2012).
XX
RN   [3]
RP   1-625
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [3] (Consensus)
XX
CC   Replaced by the sequence Phanio_DSim from Ref[3]; renamed
CC   accordingly.
XX
SQ   Sequence 625 BP; 200 A; 170 C; 84 G; 171 T; 0 other;
     agtaacatat ctacacccac aactccccaa tcacaaccac acacactatt gtaaacaatc        60
     acacacacac attaatctct aagtacgaaa tgtattcaaa gatcgagagc ccttcgatta       120
     tgcttagctt tcatctacgc gcagcaaagt gcaaaagtcc gaagtccaaa gtctagactc       180
     tggggcgagc caatgtccac gtcccctaaa cattcgatca cttggcgagc caactgaaat       240
     aacaaaaact tccgcccaca caatcgtctc aggattctca aattactcct atttttcggg       300
     gctcctctct taacgggaga atagacacct ctctttccgg gagaataaac gttgataacc       360
     ttattctctt aaacttcgct cttaagctat cccaatccgc ctatataaac ccaatcatgt       420
     ccccatacat cagttcagtt ctgagtacgt tatcaatcgc gataacactg ctaagcccac       480
     ttcaacctcg aagtccatta tccaacctag tgataatcca aaggctctag ttcttccttt       540
     actggaaata ataaaacgtt taataataaa taaaataacc tcctgtgttc tttttttatt       600
     aaacactcgg tctgaattcg taaat                                             625
//
ID   Phidippo_Dm repbase;    DNA;    INV; 7278 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   22-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phidippo;
KW   Phidippo_Dm.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7278
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs(1-362, and
CC   6917-7278). ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           913..2379
FT                 /product="Phidippo_Dm_1p"
FT                 /translation="MYRNSNENNDSDEDLIQSYKDIRNNSHQGGYIDGTET
FT                 DEDIELSNLIDGFTDKVKMVNDQEFQNQHQDLQQETTATQEQAKTSGTISN
FT                 KDVIRLMEAAVNGALEHQQKIFSEKLKEVGNRQRVNEGGPLVVYEQIPHNS
FT                 AISCNEPLDLVKSIPSFDGKQDEYVAWRTAAVNAYEIYKPYLGSSRTYQAV
FT                 GIIRNKVIGPAGVMLTSHNTVLNFDAIIARMDCAYAEQTPIEVTQQQMVTM
FT                 RQGELPLMTFYNEIERKLTLIISKTLLSYDTNTAAILNNRSRQDALTAFVT
FT                 GLKKSVRHVVLSAAPKDLPSALAVAQRAESCNERAWFVASFNKNLEDKSYN
FT                 SENRRQGNRFHNTPQGNNHNNSQGVFQRNQNNNAPGTSNQTRGSQFSKNQG
FT                 HKGQTQQNSESNNPRKSYSQNLGPEPMDVDPTSRSKFRGEQTARSRQWLNH
FT                 TTQEQSHDQEYRVKSSYEAAEIEADNTSDSESCNFLGERPCSRT"
FT   CDS           2349..5438
FT                 /product="Phidippo_Dm_2p"
FT                 /translation="FFRGTSLLPYIIRTIAGREIRLLLDTGASKNYIKPLS
FT                 ELKHFKPVETPFEVTSIHGHTKIKQKCLIHLFNVKSYFFLLNNLNGYDGIV
FT                 GLDVLKRVNAKIDLTKNIIEHDHGTEQIFYSKCRNVNFININDVDVPNAVN
FT                 EDFKKMIKNRSKAFADPNESLPFNINTVATIRTDGEPVYSKLYPYPMGVAD
FT                 FVNSEVKQLLADGIIRPSRSPYNNPIWVVDKKGFDEEGHRKKRLVIDFRKL
FT                 NQKTIDDKYPIPSISTILSNIGKAQYFTTLDLKSGFHQIELAERDREKTAF
FT                 SVNNGKYEFCRLPFGLKNAPSIFQRAIDDVLRDHIGKTCYVYVDDVIIFSQ
FT                 TMESHVNDINTVLKTLCDAGMRVSVEKSMFFKENVEYLGFIVSRGGIKTSP
FT                 EKVKAIKEFQPPSTLFSLRSFLGLASYYRCFIKGFASIARPLTNILKGDNG
FT                 KIGANHSKKVKLELTNEQRKSFEKLRNILESEDVMLAYPDFTQPFDLTTDA
FT                 SGSGLGAVLSQKGRPITMISRTLRGTEISMATNERELLAIVWALQNLRSYL
FT                 YGVKKLNIFTDHQPLTGSMSDKNPNPRLKRWKAFVDEHNAQVFYKPGKENH
FT                 VADALSRQNVNALDNDTHSDIATIHSEESLTYTIESTEKPVNCFRNQIVIE
FT                 QADFPSIKSIILFKSKTRHIVRFTDRTTLLRSLEDLVKIDVVNAIHCELPI
FT                 LAFIQHDLIVAFPSTTFRHCKSLVTDITNSTEQREIMTTEHNRAHRAGQEN
FT                 VKQVLRDYFFPKMGQLAAEITANCRTCSKAKYNRHPVQQTIAETPIPGYTG
FT                 EIIHIDIFSTDQKHFLTCIDKFSKFAIVQPIDSRAIVDIKTPILQLINLFP
FT                 KIKTVYCDNERSINSQTIRTILENRYGIQVSNAPPLHSTSNGQVERFHSTL
FT                 AEIARCIKIDQNITETTDLILFATIEYNRTVHSVTNKKPHEIVHAIPPDFA
FT                 GTIRDKIKEAQEKTLRYSNEHKDNKQYQVGEKVWLKTNRRLGTKLTPLCSE
FT                 EVIEADLGTTVLIKGRVVHKDNLR"
FT   CDS           5442..7058
FT                 /product="Phidippo_Dm_3p"
FT                 /note="env."
FT                 /translation="EGAQFNSLYFIFFALRLGNLLLPLVLLTTPSWTIKLN
FT                 EYSHANHIPIMDGDITLWDEYGYMGHTTNVTSYETYADETKHAMDFFVKEH
FT                 MRRVLETDLERIETLLDTLKVRHRHARSLNFIGTALKAIAGTPDSDDWDQV
FT                 RLRQGQLTDSVNGQIEINDKIQLQLNTLTSSMNSILKSDNLDTEHLYETIL
FT                 AKNRVVIQELENLILAITLSKLNVISPIILNDVDVKEIESKHPTNVSVSDI
FT                 LEVASIKTFQNRDLLYFLIKFPKPLLTCRKIRIFPVQHENRILDFEDGSTV
FT                 ADCGTETFAVKDCNVSAGTTFCRRSKAPTCAQQLISGMVAHCNTQPGHLDP
FT                 VTMIDEGMLITNDVTINITDEKGISRMISGTYLVSYTEKIKINGTLYVNNI
FT                 GTSKKKAAVSAMAQVNVLRHLERLSLSSIHGMSVKNLQHINHLQSRLPSGN
FT                 TWIFCSVSSTASITLVIIFLIYRLKAKRQQPSKTIESGDDFILRQGGVNTS
FT                 KSEGCDDPPKCHPRPDGPTITSATLSQPSNAFRFSESDVQGSA"
XX
SQ   Sequence 7278 BP; 2511 A; 1609 C; 1474 G; 1684 T; 0 other;
     agttaacacg agcaagtcag aggggtgcga cgacccgccg aaatgccatc caagaccgga        60
     tggaccaaca ataacatcgg cgacgctgag ccagcccagt aacgcatttc gctttagcga       120
     aagcgatgtg caagggtcag cgtaatgcga ggcgggcatg tgcgcgctgg gtgaccgtcg       180
     aaggcacgga actccagacg gcacgaggcg ctgactaagc gctctgctgg gaccgctgcc       240
     tccaaccgaa gacttggcgg cctgaataaa tttgatttgc atttagttgg taagatacca       300
     gaattcagag cagttggctc taataaaaag aaccattcaa tacaaacgta tttggtttaa       360
     ttggcgccca acgcgcttaa gtgtcgtaaa accgtaaaat ccgtagtaaa aagatctaga       420
     aatcaaggtc tcgtaatcgg gttttctttg aaaacacttc ggactcgcgc gctgcacaat       480
     aatagtgaac agcaacaaac aaacaaaatt atctaataca aaaacaaaac aacgctgcac       540
     aagcaacagt gaaaaccgct gcatatcaac agtaatcagc taaatcaacg acagccagag       600
     gataaacgga tcaaccagct actgtcttcg atgcattttt attataccag tataccaata       660
     taacatgtaa gtgagatctt tattttcaat ttacctcttt taacgtcaac cagacatgtg       720
     tgccaatttt tgaaaaaaat acacataata agtaacgaaa taaaacaaaa aaaaagagtg       780
     attgcaatta aaagttcagg tatagcgatt ttcatttaca aatttaaaaa aaaaaaaaca       840
     aatgatgaag aaggaaaatt aagctctttc tcatacaaat tataaaaaaa atttaaaaag       900
     tatcattgtc cgatgtatag aaacagtaac gaaaacaacg acagtgacga agacttaata       960
     cagagctata aagacataag aaataatagc catcaagggg gttacattga cggtactgag      1020
     accgacgaag atatagaatt aagtaactta attgacggct ttacagacaa agtaaaaatg      1080
     gttaacgacc aggaatttca aaatcaacat caggaccttc aacaagagac aacagcaaca      1140
     caagaacagg cgaaaacctc aggtaccatt agtaataaag atgtaattag actcatggaa      1200
     gcggccgtaa atggcgcact agagcatcaa caaaaaatat tttcagaaaa gcttaaagag      1260
     gttgggaata ggcagagagt aaatgagggt ggacccctag tggtatacga gcaaatacca      1320
     cataactcag ctatctcttg taatgaaccg ctagacttag taaagtccat accaagtttt      1380
     gacggaaaac aagatgagta tgtggcatgg cgaaccgcag cagttaacgc ctacgaaatc      1440
     tacaaaccat atttgggtag ctctagaacc taccaggccg taggaatcat acgtaacaag      1500
     gtaataggcc ccgcgggagt aatgcttacg tcacataata cagtactaaa ttttgatgct      1560
     ataatagcta gaatggactg cgcttatgca gaacaaactc caatcgaggt aacgcaacaa      1620
     caaatggtta ctatgcgtca gggagaactt cccctaatga ctttttataa tgagattgag      1680
     agaaagctaa ctcttattat tagtaagact ttgttgtctt atgacacaaa tactgccgct      1740
     atcttaaata atagatcacg gcaggacgct ttgaccgctt ttgtgaccgg gttaaaaaaa      1800
     tcagtccgac atgtagttct ctcagctgcg cccaaagatt tgccatcagc attggctgtg      1860
     gctcaacggg cagagtcttg caatgaacga gcctggttcg ttgcaagctt taataaaaat      1920
     ttagaggaca aatcttacaa ttcagaaaac cgtcgccagg gtaaccgttt tcataacacc      1980
     ccacaaggta ataaccacaa caactcccag ggtgttttcc agagaaatca aaacaataat      2040
     gcaccgggca ctagtaacca aactagaggc tctcaatttt ctaaaaacca aggacataaa      2100
     ggccaaacgc aacagaacag tgaatcaaat aatcctcgta aaagctattc tcaaaatcta      2160
     ggtcctgaac caatggacgt tgatcccaca tcacgttcta aatttagggg cgagcagaca      2220
     gctcgcagtc gtcaatggtt gaaccatacg acccaagagc agtcacatga ccaggagtat      2280
     agggtaaagt catcctacga agcagcggaa atcgaggcag ataacacgtc cgattccgaa      2340
     tcatgtaatt ttttagggga acgtccctgc tcccgtacat aattcgtacg atagcggggc      2400
     gggaaatcag gttactgtta gatacaggag cctccaaaaa ttacataaaa cctttatctg      2460
     aattaaaaca cttcaaaccg gtggaaacac catttgaagt tacatcaatc catgggcaca      2520
     caaaaataaa acaaaagtgt ctgatccatc tattcaatgt taagtcatac tttttcttgt      2580
     taaacaacct gaacggatat gacggaattg ttggactaga tgtactaaaa agggtcaatg      2640
     caaaaattga tctaacaaaa aacatcattg agcatgatca tggtacagag cagatttttt      2700
     actcaaaatg cagaaatgta aactttatta acatcaatga cgtggacgtg ccaaacgccg      2760
     tcaacgaaga ttttaaaaag atgatcaaaa acagatcaaa agcctttgcg gacccaaacg      2820
     agtccctccc ctttaatata aatacggtcg ccacgatccg cactgacggg gaacctgtat      2880
     attcaaaact ttacccatat ccgatgggtg tagccgattt cgtcaattcg gaagttaaac      2940
     aacttctagc agacggaata ataagaccat cccggtcgcc ttacaataac ccaatttggg      3000
     ttgttgataa gaagggtttt gacgaagaag gtcataggaa gaaacgtctc gttattgact      3060
     tcagaaaact gaatcagaaa acaattgatg acaagtatcc tataccatcc atatcgacca      3120
     tactgtcgaa cattggaaaa gcccagtact tcacgactct tgatctgaag tcgggcttcc      3180
     atcaaattga gctcgcggag cgcgatcgag aaaagacagc tttttcggtc aacaacggga      3240
     agtatgaatt ctgcagactt ccctttggtt taaaaaatgc ccctagtatt ttccaacggg      3300
     ccatagatga tgttctgaga gatcacatcg gtaaaacttg ctatgtctac gtcgatgacg      3360
     taatcatttt ctcccaaaca atggagagtc atgtcaacga tataaacacg gtcctaaaaa      3420
     ctttgtgcga tgcaggcatg agagtgtctg tagaaaaatc tatgttcttt aaggagaacg      3480
     tagaatattt gggattcata gtgtcccgag ggggaattaa aacttcgcct gaaaaggtta      3540
     aggctataaa agaatttcaa cctccatcaa cactgttcag tctcaggtca tttctgggac      3600
     tggccagtta ttatagatgt ttcataaagg ggtttgctag catcgcaaga cctctgacga      3660
     atattctaaa aggtgacaat ggaaaaattg gtgcaaacca ctcaaagaaa gtcaaactag      3720
     agctgaccaa cgagcagcga aaatcatttg aaaaacttag aaacatcctg gagtctgagg      3780
     atgtcatgtt ggcataccca gatttcactc agccatttga cttgaccact gacgcctctg      3840
     gaagcggcct aggggctgtt ctttcacaga aaggtcgtcc aatcaccatg atctctcgta      3900
     cgttacgcgg aacagagatt tcaatggcaa caaacgaacg agaactacta gcaatagtat      3960
     gggcactcca aaatctcaga agctatttat atggcgtaaa gaagttaaac atcttcaccg      4020
     accatcaacc actgaccggt tcaatgtcgg ataaaaatcc gaatcccagg ctcaaaaggt      4080
     ggaaagcgtt tgttgatgaa cataacgcac aagtgttcta caagccgggt aaagaaaacc      4140
     acgtagccga cgccttgtcg cggcaaaacg taaatgcttt agataacgat acacactccg      4200
     acatcgctac tatccacagc gaggagtcgt tgacctacac tatagagtca acggaaaaac      4260
     ctgtaaactg tttcaggaac caaatagtga tcgaacaggc agatttcccg tctataaagt      4320
     caatcatcct ttttaaatca aaaacgcgtc acattgtgcg atttacagac cgcacaacac      4380
     tgcttcgctc actagaagat ttagtaaaaa tagatgtcgt caatgcaatc cactgcgagc      4440
     tacctatact cgccttcatt cagcacgatt taatcgtcgc ttttccctcg acgacattta      4500
     gacattgtaa aagcttggtc accgatataa caaacagtac cgagcaaagg gaaattatga      4560
     ccacggaaca caatagggcc catagagcag gacaggaaaa cgtaaaacag gtccttcgtg      4620
     actacttttt tcccaaaatg ggccagctag cggcagaaat caccgcaaat tgcagaacat      4680
     gttccaaagc aaaatacaat cgtcacccag tgcaacaaac catagcggaa acaccaattc      4740
     ccggttatac tggggaaatt atccacatag atatattttc aactgatcaa aagcattttc      4800
     taacttgtat cgacaaattt tcaaaattcg ctatagtcca accaatcgat tcaagagcaa      4860
     tcgtagatat caaaactccg atactacaac taataaatct gttccctaaa ataaaaacag      4920
     tttattgcga caatgaaagg tctatcaact cacaaaccat acgaaccatc ctagaaaata      4980
     ggtatggtat acaggtctca aatgcgcccc ccttgcacag cacgtctaat ggccaagttg      5040
     agagatttca tagcacccta gcagaaatcg cacggtgcat caagatagat caaaacataa      5100
     ccgagacgac cgacctcatt ctatttgcaa caatagaata taacagaact gtccactcgg      5160
     ttacaaataa aaagcctcat gaaatagttc acgctattcc accagatttt gcgggcacaa      5220
     taagagacaa gatcaaagag gctcaagaga aaacacttag gtactcaaat gaacacaaag      5280
     acaataagca gtaccaagta ggcgaaaaag tctggttaaa aaccaacaga cgcctgggta      5340
     ccaaattaac gccactctgc tcagaagagg tcattgaggc tgatctgggc acgacagtgc      5400
     ttattaaagg gagggtggtc cataaggaca accttcgtta agagggtgcc caatttaact      5460
     ctctatattt tatatttttc gcacttaggt taggaaactt gctactcccg ttagtcctac      5520
     tgacaactcc ctcttggacc ataaaactaa acgaatactc acacgctaac cacataccaa      5580
     taatggacgg agatattact ttatgggacg agtacggtta catgggacat acaacgaacg      5640
     ttacatcgta cgagacttac gcagacgaga cgaaacacgc aatggacttc ttcgtgaagg      5700
     agcacatgag acgggtactt gaaacggact tggaacgaat agagactctt ctggacacac      5760
     taaaggtacg tcaccgacat gcccgtagtc ttaatttcat agggactgct ttaaaagcaa      5820
     tagcggggac acctgactct gacgactggg accaggtgag gcttagacag ggacagctaa      5880
     cggactcggt aaatggacag atagaaataa acgacaaaat acaattgcaa ttaaacacac      5940
     tgacctcatc catgaactct attttaaaat cggacaactt agacacagaa catttgtacg      6000
     agacaatttt ggcaaaaaac cgtgttgtaa ttcaagagct tgaaaattta atacttgcaa      6060
     tcaccctttc caaattaaac gtaataagtc caataatcct gaatgacgtt gacgtaaagg      6120
     agattgaaag taaacatccc acaaacgtta gcgtgtcaga tattttagag gtagctagca      6180
     taaaaacttt tcaaaatcga gacctattgt actttttaat aaaatttccg aagcctttgt      6240
     taacttgtag aaaaataaga atattcccag tacagcatga aaatagaatc ttagatttcg      6300
     aggacggtag cacggtcgcg gattgcggta cggaaacctt cgcggtcaag gactgcaatg      6360
     tatcagcggg caccaccttc tgcaggagat cgaaagcgcc aacttgcgca caacaactca      6420
     tctctggcat ggtcgcccat tgcaacaccc agcctggaca cttggaccca gtcaccatga      6480
     tcgacgaggg aatgctcatc accaacgatg taacgataaa tatcaccgac gaaaagggaa      6540
     taagccggat gatatcagga acttacctgg tatcatatac cgaaaaaatt aaaataaacg      6600
     gcacccttta cgtcaacaat atcggaacat caaagaagaa agccgcagtt tcagccatgg      6660
     ctcaagtaaa cgttctgagg cacctagagc gccttagtct gtcatcaatt cacggaatga      6720
     gcgttaaaaa tctgcagcac atcaaccacc tccaatcccg actgccatca ggcaacacct      6780
     ggatcttttg ctctgtctcc tccacagcct caataaccct ggtcatcatc tttcttatct      6840
     accgtctgaa agccaaacgt caacaaccat ctaagaccat tgaatccggg gacgacttca      6900
     tcttaagaca aggaggagtt aacacgagca agtcagaggg gtgcgacgac ccgccgaaat      6960
     gccatccaag accggatgga ccaacaataa catcggcgac gctgagccag cccagtaacg      7020
     catttcgctt tagcgaaagc gatgtgcaag ggtcagcgta atgcgaggcg ggcatgtgcg      7080
     cgctgggtga ccgtcgaagg cacggaactc cagacggcac gaggcgctga ctaagcgctc      7140
     tgctgggacc gctgcctcca accgaagact tggcggcctg aataaatttg atttgcattt      7200
     agttggtaag ataccagaat tcagagcagt tggctctaat aaaaagaacc attcaataca      7260
     aacgtatttg gtttaatt                                                    7278
//
ID   Phidippo_DSe repbase;    DNA;    INV; 7338 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Phidippo_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7338
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs(1-361, and
CC   6978-7338). ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           911..2377
FT                 /product="Phidippo_DSe_1p"
FT                 /translation="MYRNSNENNDSDEDLIQSYKDIRNNSHQGGYIDGTET
FT                 DEDIELSNLIDGFTDKVKMVNDQEFQNQHQDLQQETTATQEQAKTSGTISN
FT                 KDVIRLMEAAVNGALEHQQKIFSEKLKEVENRQRVNEGGPLVVYEQIPHNS
FT                 AISCNEPLDLVKSIPSFDGKQDEYVAWRTAAVNAYEIYKPYLGSSRTYQAV
FT                 GIIRNKVIGPAGVMLTSHNTVLNFDAIIARMDCAYAEQTPIEVTQQQMLTM
FT                 RQGELPLMTFYNEIERKLTLIISKTLLSYDTNTAAILNNRSRQDALTAFVT
FT                 GLKKSVRHVVLSAAPKDLPSALAVAQRAESCNERAWFVANFNKNLEDKSYN
FT                 SENRRQGNRFHSTPQGNNHNNSQGVFQRNQNNNAPGTSNQTRGSQFSKNQG
FT                 HKGQTQQNSESNNPRKSYSQNLGPEPMDVDPTSRSKFRGEQTARSRQWLNH
FT                 TTQEQSHDQEYRVKSSYEAAEIEADNTSDSESCNFLGERPCSRT"
FT   CDS           2347..5436
FT                 /product="Phidippo_DSe_2p"
FT                 /translation="FFRGTSLLPYIIRTIAGREIRLLLDTGASKNYIKPLS
FT                 ELKHFKPVETPFEVTSIHGHTKIKQKCLIHLFNVKSYFFLLNNLNGYDGIV
FT                 GLDVLKRVNAKIDLTKNIIEHDHGTEQIFYSKCRNVNFININDVDVPNAVN
FT                 EDFKKMIKNRSKAFADPNESLPFNINTVATIRTDGEPVYSKLYPYPMGVAD
FT                 FVNSEVKQLLADGIIRPSRSPYNNPIWVVDKKGFDEEGHRKKRLVIDFRKL
FT                 NQKTIDDKYPIPSISTILSNIGKAQYFTTLDLKSGFHQIELAERDREKTAF
FT                 SVNNGKYEFCRLPFGLKNAPSIFQRAIDDVLRDHIGKTCYVYVDDVIIFSQ
FT                 TMESHVNDINTVLKTLCDAGMRVSVEKSMFFKENVEYLGFIVSRGGIKTSP
FT                 EKVKAIKEFQPPSTLFSLRSFLGLASYYRCFIKGFASIARPLTNILKGDNG
FT                 KIGANHSKKVKLELTNEQRKSFEKLRNILESEDVMLAYPDFTQPFDLTTDA
FT                 SGSGLGAVLSQKGRPITMISRTLRGTEISMATNERELLAIVWALQNLRSYL
FT                 YGVKKLNIFTDHQPLTGSMSDKNPNPRLKRWKAFVDEHNAQVFYKPGKENH
FT                 VADALSRQNVNALDNDTHSDIVTIHSEESLTYTIESTEKPVNCFRNQIVIE
FT                 QADFPSIKSIILFKSKTRHIVRFTDRTTLLRSLEDLVKIDVVNAIHCELPI
FT                 LAFIQHDLIVAFPSTTFRHCKSLVTDITNSTEQREIMTTEHNRAHRAGQEN
FT                 VKQVLRDYFFPKMGQLAAEITANCRTCSKAKYNRHPVQQTIAETPIPGYTG
FT                 EIIHIDIFSTDQKHFLTCIDKFSKFAIVQPIDSRAIVDIKTPILQLINLFP
FT                 KIKTVYCDNERSINSQTIRTILENRYGIQVSNAPPLHSTSNGQVERFHSTL
FT                 AEIARCIKIDQNITETTDLILFATIEYNRTVHSVTNKKPHEIVHAIPPDFA
FT                 GTIRDKIKEAQEKTLRYSNEHKDNKQYQVGEKVWLKTNRRLGTKLTPLCSE
FT                 EVIEADLGTTVLIKGRVVHKDNLR"
FT   CDS           5440..7119
FT                 /product="Phidippo_DSe_3p"
FT                 /translation="EGAQFNLKFFFTFFYIITFLYFSGVCYSLYFIFFALR
FT                 LGNLLLPLVLLTTPSWTIKLNEYSHANHIPIMDGDITLWDEYGYMGHTTNV
FT                 TSYETYADETKHAMDFFVKEHMRRVLETDLERIETLLDTLKVRHRHARSLN
FT                 FIGTALKAIAGTPDSDDWDQVRLRQGQLTDSVNGQIEINDKIQLQLSTLTS
FT                 SMNSILKSDNLDTEHLYETILAKNRVVIQELENLILAITLSKLNVISPIIL
FT                 NDVDVKEIESKHPTNVSVSDILEVASIKTFQNRDLLYFLIKFPKPLLTCRK
FT                 IRIFPVQHENRILDFEDGSTVADCGTETFAVKDCNVSAGTTFCRRSKAPTC
FT                 AQQLISGMVAHCNTQPGHLDPVTMIDEGMLITNDVTINITDEKGISRMISG
FT                 TYLVSYTEKIKINGTLYVNNIGTSKKKAAVSAMAQVNVLRHLERLSLSSIH
FT                 GMSVKNLQHINHLQSRLPSGNTWIFCSVSSTASITLVIIFLIYRLKAKRQQ
FT                 PSKTIESGDDFILRQGGVNTSKSEGCDDPPKCHPRPDGPTITSATLSQPSN
FT                 AFRFSESDVQGSA"
XX
SQ   Sequence 7338 BP; 2522 A; 1613 C; 1479 G; 1724 T; 0 other;
     agttaacacg agcaagtcag aggggtgcga cgacccgccg aaatgccatc caagaccgga        60
     tggaccaaca ataacatcgg cgacgctgag ccagcccagt aacgcatttc gctttagcga       120
     aagcgatgtg caagggtcag cgtaatgcga ggcgggcatg tgcgcgctgg gtgaccgtcg       180
     aaggcacgga actccagacg gcacgaggcg ctgactaagc gctctgctgg gaccgctgcc       240
     tccaaccgaa gacttggcgg cctgaataaa tttgatttgc atttagttcg taagatacca       300
     gaattcagag cagttggctc taataaaaag aaccattcaa tacaaacgta tttggtttaa       360
     ttgacgccca acgcgcttaa gtgtcgtaaa accttaaaat ccgtagtaaa aagatctaga       420
     aatcaaggtc tcgtaatcgg gttttctttg acacttcgga ctcgcgcgct gcacaataat       480
     agtgaacagc aacaaacaaa caaaattatc taatacaaaa gcaaaacaac gctgcacaag       540
     caacagtgaa aaccgctgca tatcaacagt aatcagctaa atcaacgaca gccagaggat       600
     aaacggatca accagctacc gtcttcgatg catttttatt ataccagtat accaatataa       660
     catgtaagtg agatctttat tttcaattta cctcttttaa cgtcaaccag acatgtgtgc       720
     caatgtttga aaaaaataca cataataagt aacgaaataa aaaaaaaaag tgattgcaat       780
     taaaagttca ggtatagcga ttttcattta caaatttaaa aaaaaaaaaa aaaaaacaaa       840
     tgatgaagaa ggaaaattaa gctctttctc atacaaatta taaaaaaaat ttaaaaagta       900
     tcattgtccg atgtatagaa acagtaacga aaacaacgac agtgacgaag acttaataca       960
     gagctataaa gacataagaa ataatagcca tcaagggggt tacattgacg gtactgagac      1020
     cgacgaagat atagaattaa gtaacttaat tgacggcttt acagacaaag taaaaatggt      1080
     taacgaccag gaatttcaaa atcaacatca ggaccttcaa caagagacaa cagcaacaca      1140
     agaacaggcg aaaacctcag gtaccattag taataaagat gtaattagac tcatggaagc      1200
     ggccgtaaat ggcgcactag agcatcaaca aaaaatattt tcagaaaagc ttaaagaggt      1260
     tgagaatagg cagagagtaa atgagggtgg acccctagtg gtatacgagc aaataccaca      1320
     taactcagct atctcttgta atgaaccact agacttagta aagtccatac caagttttga      1380
     cggaaaacaa gatgagtatg tggcatggcg aaccgcagca gttaacgcct acgaaatcta      1440
     caaaccatat ttgggtagct ctagaaccta ccaggccgta ggaatcatac gtaacaaggt      1500
     aataggcccc gcgggagtaa tgcttacgtc acataataca gtactaaatt ttgatgctat      1560
     aatagctaga atggactgcg cttatgcaga acaaactcca atcgaggtaa cgcaacaaca      1620
     aatgcttact atgcgtcagg gagaacttcc cctaatgact ttttataatg agattgagag      1680
     aaagctaact cttattatta gtaagacttt gttgtcttat gacacaaata ctgccgctat      1740
     cttaaataac aggtcacggc aggacgcttt gaccgctttt gtgaccgggt taaaaaaatc      1800
     agtccgacat gtagttctct cggctgcgcc caaagatttg ccatcagcat tggctgtggc      1860
     tcaacgggca gagtcttgca atgagcgagc ctggttcgtt gcaaacttta ataaaaattt      1920
     agaggacaaa tcctacaatt cagaaaaccg tcgccagggt aaccgttttc atagcacccc      1980
     acaaggtaat aaccacaaca actcccaggg tgttttccag agaaatcaaa acaataatgc      2040
     accgggcact agtaaccaaa ctagaggctc tcaattttct aaaaaccaag gacataaagg      2100
     ccaaacgcaa cagaacagtg aatcaaataa tcctcgtaaa agctattctc aaaatctagg      2160
     tcctgaacca atggacgttg atcccacatc acgttctaaa tttaggggcg agcagacagc      2220
     tcgcagtcgt caatggttga accatacgac ccaagagcag tcgcatgatc aggagtatag      2280
     ggtaaagtca tcctacgaag cagcggaaat cgaggcagat aacacgtccg attcggaatc      2340
     atgtaatttt ttaggggaac gtccctgctc ccgtacataa ttcgtacgat agcggggcgg      2400
     gaaatcaggt tactgttaga tacaggagcc tccaaaaatt acataaaacc tttatctgaa      2460
     ctaaaacact tcaaaccggt ggaaacacca tttgaagtta catcaatcca tgggcacaca      2520
     aaaataaaac aaaagtgtct gatccatcta ttcaatgtta agtcatactt tttcttgtta      2580
     aacaacctga acggatatga cggaattgtt ggactagatg tactaaaaag ggtcaatgca      2640
     aaaattgatc taacaaaaaa catcattgag catgatcatg gtacagagca gattttttac      2700
     tcaaaatgca gaaatgtaaa ctttattaac atcaatgacg tggacgtgcc aaacgccgtc      2760
     aacgaagatt ttaaaaagat gatcaaaaac agatcaaaag cctttgcgga cccaaacgag      2820
     tccctcccct ttaatataaa tacggtcgcc acgatccgca ctgacgggga acctgtatat      2880
     tcaaaacttt acccatatcc gatgggtgta gccgatttcg tcaattcaga agttaaacaa      2940
     cttctagcag acggaataat aagaccatcc cggtcgcctt acaataaccc aatttgggtt      3000
     gttgataaga agggttttga cgaagaaggt cataggaaga aacgtctcgt tattgacttc      3060
     agaaaactga atcagaaaac aattgatgac aagtatccta taccatccat atcgaccata      3120
     ctgtcgaaca ttggaaaagc ccagtacttc acgactcttg atctgaagtc gggcttccat      3180
     caaattgagc tcgcggagcg cgatcgagaa aagacagctt tttcggtcaa caatgggaag      3240
     tatgaattct gcagacttcc ctttggttta aaaaatgccc ctagtatttt ccaacgggcc      3300
     atagatgatg ttctgagaga tcacatcggt aaaacttgct atgtctacgt cgatgacgta      3360
     atcattttct cccaaacaat ggagagtcat gtcaacgata taaacacggt cctaaaaact      3420
     ttgtgcgatg caggcatgag agtgtctgta gaaaaatcta tgttctttaa ggagaacgta      3480
     gaatatttgg gattcatagt gtcccgaggg ggaattaaaa cttcgcctga aaaggttaag      3540
     gctataaaag aatttcaacc tccatcaaca ctgttcagtc tcaggtcatt tctgggactg      3600
     gccagttatt atagatgttt cataaagggg tttgctagca tcgcaagacc tctgacgaat      3660
     attctaaaag gtgacaatgg aaaaattggt gcaaaccact caaagaaagt caaactagag      3720
     ctgaccaacg agcagcgaaa atcatttgaa aaacttagaa acatcctgga gtctgaggat      3780
     gtcatgttgg catacccaga tttcactcag ccatttgact tgaccactga cgcctctgga      3840
     agcggcctag gggctgttct ttcacagaaa ggtcgtccaa tcaccatgat ctctcgtacg      3900
     ttacgcggaa cagagatttc aatggcaaca aatgaacgag aactactagc aatagtatgg      3960
     gcactccaaa atctcagaag ctatttatat ggcgtaaaga agttaaacat cttcaccgac      4020
     catcaaccac tgaccggttc aatgtcggat aaaaatccga atcccaggct caaaaggtgg      4080
     aaagcgtttg ttgatgaaca taacgcacaa gtgttctaca agccgggtaa ggaaaaccac      4140
     gtagccgacg ccttgtcgcg gcaaaacgta aatgctttag ataacgatac acactccgac      4200
     atcgttacta tccacagcga ggagtcgttg acctacacta tagagtcaac ggaaaaacct      4260
     gtaaactgtt tcaggaacca aatagtgatc gaacaggcag atttcccgtc tataaagtcg      4320
     atcatccttt ttaaatcaaa aacgcgtcac attgtgcgat ttacagaccg cacaacactg      4380
     cttcgctcac tagaagattt agtaaaaata gatgtcgtca atgcaatcca ctgcgagcta      4440
     cctatactcg ccttcattca gcacgattta atcgtcgctt ttccctcgac gacatttaga      4500
     cattgtaaaa gcttggtcac cgatataaca aacagtaccg agcaaaggga aattatgacc      4560
     acggaacaca atagggccca tagagcagga caggaaaacg taaaacaggt ccttcgtgac      4620
     tacttttttc ccaaaatggg ccagctagcg gcagaaatca ccgcaaattg cagaacatgt      4680
     tccaaagcaa aatacaatcg tcacccagtg caacaaacca tagcggaaac accaattccc      4740
     ggttatactg gggaaattat ccacatagat atattttcaa ctgatcaaaa gcattttcta      4800
     acttgtatcg acaaattttc aaaattcgct atagtccaac caatcgattc aagagcaatc      4860
     gtagatatca aaactccgat actacaacta ataaatctgt tccctaaaat aaaaacagtt      4920
     tattgcgaca atgaaaggtc tatcaactca caaaccatac gaaccatcct agaaaatagg      4980
     tatggtatac aggtctcaaa tgcgcccccc ttgcacagca cgtctaatgg ccaagttgag      5040
     agatttcata gcaccctagc agaaatcgca cggtgcatca agatagatca aaacataacc      5100
     gagacgaccg acctcattct atttgcaaca atagaatata acagaactgt ccactcggtt      5160
     acaaataaaa agcctcatga aatagttcac gctattccac cagattttgc gggcacaata      5220
     agagacaaga tcaaagaggc tcaagagaaa acacttaggt actcaaatga acacaaagac      5280
     aataagcagt accaagtagg cgaaaaagtc tggttaaaaa ccaacagacg cctgggtacc      5340
     aaattaacgc cactctgctc agaagaggtc attgaggctg atctgggcac gacagtgctt      5400
     attaaaggga gggtggtcca taaggacaac cttcgttaag agggtgccca atttaattta      5460
     aaattttttt ttacattttt ttatattatc acttttttat actttagtgg cgtttgttac      5520
     tctctatatt ttatattttt cgcacttagg ttaggaaact tgctactccc gttagtccta      5580
     ctgacaactc cctcttggac cataaaacta aacgaatact cacacgctaa ccacatacca      5640
     ataatggacg gagatattac tttatgggac gagtacggtt acatgggaca tacaacgaac      5700
     gttacatcgt acgagactta cgcagacgag acgaaacacg caatggactt cttcgtgaag      5760
     gagcacatga gacgggtact tgaaacggac ttggaacgaa tagagactct tctggacaca      5820
     ctaaaggtac gtcaccgaca tgcccgtagt cttaatttca tagggactgc tttaaaagca      5880
     atagcgggga cacctgactc tgacgactgg gaccaggtga ggcttagaca gggacagcta      5940
     acggactcgg taaatggaca gatagaaata aacgacaaaa tacaattgca attaagcaca      6000
     ctgacctcat ccatgaattc tattttaaaa tcagacaact tagacacaga acatttgtac      6060
     gagacaattt tggcaaaaaa ccgtgttgta attcaagagc ttgaaaattt aatacttgca      6120
     atcacccttt ctaaattaaa cgtaataagt ccaataatcc tgaatgacgt tgacgtaaag      6180
     gagattgaaa gtaaacatcc cacaaacgtt agcgtgtcag atattttaga ggtagctagc      6240
     ataaaaactt ttcaaaatcg agacctattg tactttttaa taaaatttcc gaagcctttg      6300
     ttaacttgta gaaaaataag aatattccca gtacagcatg aaaatagaat cttagatttc      6360
     gaggacggta gcacggtcgc ggattgcggt acggaaacct tcgcggtcaa ggactgcaat      6420
     gtatcagcgg gcaccacctt ctgcaggaga tcgaaagcgc caacttgcgc acaacaactc      6480
     atctctggca tggtcgccca ttgcaacacc cagcctggac acttggaccc agtcaccatg      6540
     atcgacgagg gaatgctcat caccaacgat gtaacgataa atatcaccga cgaaaaggga      6600
     ataagccgga tgatatcagg aacttacctg gtatcatata ccgaaaaaat taaaataaac      6660
     ggcacccttt acgtcaacaa tatcggaaca tcaaagaaga aagccgcagt ttcagccatg      6720
     gcccaagtaa acgttctgag gcatctagag cgccttagtc tgtcatcaat tcacggaatg      6780
     agcgttaaaa atctgcagca catcaaccac ctccaatccc gactgccatc aggcaacacc      6840
     tggatctttt gctctgtctc ctccacagcc tcaataaccc tggtcatcat ctttcttatc      6900
     taccgtctga aagccaaacg tcaacaacca tctaagacca ttgaatccgg ggacgacttc      6960
     atcttaagac aaggaggagt taacacgagc aagtcagagg ggtgcgacga cccgccgaaa      7020
     tgccatccaa gaccggatgg accaacaata acatcggcga cgctgagcca gcccagtaac      7080
     gcatttcgct ttagcgaaag cgatgtgcaa gggtcagcgt aatgcgaggc gggcatgtgc      7140
     gcgctgggtg accgtcgaag gcacggaact ccagacggca cgaggcgctg actaagcgct      7200
     ctgctgggac cgctgcctcc aaccgaagac ttggcggcct gaataaattt gatttgcatt      7260
     tagttcgtaa gataccagaa ttcagagcag ttggctctaa taaaaagaac cattcaatac      7320
     aaacgtattt ggtttaat                                                    7338
//
ID   Pifo_DEr_A  repbase;    DNA;    INV; 5183 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: incomplete.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_DEr_A.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5183
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Incomplete sequence.
XX
SQ   Sequence 5183 BP; 1944 A; 1176 C; 765 G; 1298 T; 0 other;
     ggcaaaaata gatatattaa attcacaatt aaagacatct aacacaattt tgcctataat        60
     taactatacc aaccagacct ccaacgtgtt ttgcattaca gcccatacta aaaccacaat       120
     acccttgccg gtacaaaatg atcaagggga ttttctctat gacacgactt atattaataa       180
     agaccttatc atatcagggg gcctttacaa atcaaataac cacttaacaa ccttcgaagt       240
     ggccaactac agagattctg accaactcct atatctcgaa agccctctta aaggcatacc       300
     atatgtcaaa gctgactttg tagaacttaa taacatatct tctgacccac ccaagctacc       360
     agacttagta aaccccttag ataacttgaa aatggagcac ctcaacccgg aagagagaaa       420
     caaaacctaa tcacattatg taaagaattc tcagacattt tttttaacga aacagtaaaa       480
     ctctcattta caaataaaat tacgcattct atccctacca cggacaatac cccgattcac       540
     gtaaggtcct atagatatcc gtacattcac aaagaggaag taaagaaaca aattaattct       600
     atgctaaacc aagatataat cagatctagt tactcgccct ggagtgctcc ggtttgggta       660
     gtccccaaga aagccgggcc taatggggaa caaaaatgga gattggttat agattatcga       720
     aaactcaatg ataaaaccat ctccgatagg tacccaatac caaacataaa tgatatacta       780
     gatcgcatag ggaaagccaa atactttacc accctcgatt tggcgagtgg gtttcatcaa       840
     attgagatga acccagacga cattgccaaa acggccttta cagtagaagg agggcattat       900
     gaatttataa gaatgccttt cggcttaaaa aatgctcccg ctactttcca aagagtaatg       960
     gacagcattt taggtgacgt aataggcctc aattgtctgg tatacttgga cgatataatc      1020
     gttttttctg cttccctcca agaacatgta atacatttaa cttcaatatt tcaaaaactt      1080
     agagatgcaa actttaaagt acaattaaat aagtccgatt ttcttaggaa agaaaccgaa      1140
     ttcctcggac acatcgtcac ccaagaagga atcaaaccaa atccagacaa aatagcggct      1200
     ataaagaatt tcccttgtcc taagaataag aaagaaatta aatctttctt ggggttatta      1260
     gggtactata ggaaatttat aaaagacttc gcaaaaatta ctaagccttt aactaaacaa      1320
     ctaaaaggta acaacaagac tatcaccata gacgacgaat tcacaaaggc ggtcgatttc      1380
     tgtaaaattt tacttaccaa tgaccccata ctccaatacc ctgactttac aaaacctttt      1440
     attttaacga cagacgcaag taatttcgca ttgggagctg tcctttcaca aggcactcta      1500
     caaaatgata agccagtctg tttcgctagc cgaactctct cagacacaga agtaaactac      1560
     tcgacaatcg aaaaagaaat gttagctatt atttgggctg tccaatacta tagaccctac      1620
     ctcttcggaa caaaattcac catagtaaca gaccacaaac ctctaacatg gcttatgaac      1680
     ttcaaacagc ctaattccaa agtaattcgt tggagactcc aactcttaga atatgacttt      1740
     gaggttgtct ataaaaatgg ctcacaaaac gtcattgccg acgcgcttag ccgctcgaac      1800
     gctaatctca atcacaacga gatagtccca aattcaccgt acgaatgccc tgtatcagac      1860
     aaaccactca acgatttcaa tattcagttg gtcataaagt taagccaaga tacaggttac      1920
     aatacctcaa ctccttctaa acacaaactg cgacgagaat actatagacc tctttttcaa      1980
     ctcgaagaca ttataagtgt cttaaaacaa tccctcaaac ctaacaaatt gtgtgctata      2040
     tttgcccctg acgatatttt tgaaatcatt aataaagctt accaaatgca cttccctacc      2100
     aacggcccct tcaaaatagt aaggtgccta tcttttcttc ccgaactcac agacgattct      2160
     gaaattaccc ggaccatagt cgactaccat acgaaaaata atcatagagg catcgacgag      2220
     accttcctac acctaaagag gaaaattttt ttcccatata tgaaggataa aataactaag      2280
     ataattagaa cttgtgaaac ttgtctaaaa ctaaagtacg atagacaccc acagaaaatt      2340
     ccatttcaaa ttacagaaac cccccttaac ccctcgacat cgttcatatt gatatttaca      2400
     ctatcaacaa caactacaat ttgacaataa tagacaagtt ctctaaattt gcagccgcct      2460
     acccaattcc taatagaaac tgtattaacg tggttaaatc tttgaaacat tttataagcc      2520
     aatttggcat accaaaaaag ctagtttacg atcaaggggc cgaattttct agcgacatgt      2580
     ttagcaactt ctgctcacaa tacaatatcg tcttacatgt cacatccttt caacaatcct      2640
     ctagtaactc ccctgtagaa cgccttcact ccacatttac agaaatctac cgaataatta      2700
     tagacactag gaaacaacta aaacttaata cggaacatga cgagacaatg tcagaaacac      2760
     taattacata caatagcgca attcactcag ccacagaaca taccccgttc gaactgttta      2820
     ccggacgtac ccacacattt gaaaacaaca ctaaattcag caacgaacat gattacctag      2880
     ttaaactgaa cgaatttaaa caaaaaatat atccactcat cgcagacaaa ttatcggaaa      2940
     aggcattaca aagaacactt aaaattaatg aaacaaggac accccccgct accctagaac      3000
     ccgaaacatt ggtactcaga aaggaaaata ggaggaataa aataacaccg gttctcatta      3060
     cacaaggttc tcattacaac caaggcccaa ccctggttac cactaggaat caaaaactac      3120
     acaaatctaa aatacgaaga attatactaa agaaaaaata aattttattg caggttcacc      3180
     attccaacaa tttatgctat ttctatacaa cccctgacta ataatacccc catagcaaaa      3240
     atagaattgg ggcaagccct tattataaat agatataaga gagtcagcca tgttattaac      3300
     ctggaagaat ttagtaaatg tatcgaacaa tttcataaaa cactccagac atttaaatat      3360
     gatgacaccc taatagattc cctagccata ctaaaatcca aactaggaca ggcccaaaca      3420
     aaacttaatg cattaacccc actcaagaga aacaaacgcg gattaattaa tggattaggc      3480
     agtctcgtga aagctgtcac gggcaatatg gatgccgaag acgccagaga aataggtaaa      3540
     gacatcgaaa atattaaaat agccctttcg accgttaaca caaattacca aactcaagat      3600
     gtattcaata atgaaatttt aattagattc gagaacatta caaatcatat taataatgaa      3660
     caagttctaa taacaacatt ctttgaaaat atgcaaaata aaatttataa agaagaaaat      3720
     accttggaaa aattacagta tataaatagg attagctata acttagaatt actacttaat      3780
     cacttgaacg atataattga aagcatgtta ttagctaaaa taaatgtaat acctagattt      3840
     atattaaccg aacaagaaat atataaaatt aaaatgttac tggaaaatca aaatattacg      3900
     ataaaaagcg aacaacacat ttacgatttg ttaaaaatga acacgttaag ctacgaaaat      3960
     aacataattt ttactatcca aatacctatt tttgaaaaag ataattacaa aatagccaga      4020
     ttaattccct taccaattaa taataaatac tttgttatga ttcctaacta tttaatatat      4080
     aagaataatg ttaataagta ctacttgact caaaactgcc ccaaagtaga cgacacgttt      4140
     atatgcaaca aagacgcata catcaacaca ccgcaaaatg acacctgcac tcaacaatta      4200
     ttggattcca agaacagctc ctgcgatgtg caagagagag gccctgttgc agacgtattc      4260
     gaggcggaaa aaggctatat tttcgcattc aacgccaata acctgaaggc tcagctaaaa      4320
     aacggtagcg aaatcactat aaatggctca gctatcatca aatacgtgaa cgaaactata      4380
     cgcatcaacg gcatagagta cgacaacgga gttgagacaa cctttgagca cttagaccta      4440
     atcctacccc cccttaagga aatgaccagg aataaaactg tggaaatact gagtttacaa      4500
     aacattcacc tagaggccat agaaacatca aataagattc tgactatcca ccaaaccgcc      4560
     acacaacacg cttggaccct ttacattcta ctgggtttcg tcgccatcct cactgttact      4620
     gcatggctgc atcgacgcac aaaacacgta ttccacgtac aggatcacaa tcaccacctg      4680
     cctatttacg ctccagcaat accttcgcta tggccgtcgc ttcaaactgg ggagggagga      4740
     gttaccacag tcaccacacc ccctaaaccc ccacgcctac accactgaac acatcgacgc      4800
     ccatgggcac tccggtacaa cgaaccggga aacgaataaa caaattagtc aacaatgtat      4860
     ctacaacgta tcgacatccg gccaaatgct gacactaaca tcagcagacc agacggcaag      4920
     aatgccgatg cagcataaga acctagcata acccttatat ataagaacta tgtacttaga      4980
     tttggaggct tcttgagaag aacgaaagaa atatagaatc actcttaagt tttgaaccca      5040
     aagcgtgaag ttgtgttact gaatcccata caagtgcctg aacaaaatct catgcaaagt      5100
     gccgacagcc gactataagc gaaccaccca acatctttac tgctgttata ttcacctccc      5160
     atcattcggc ccgaatggta act                                              5183
//
ID   Pifo_DEr_B  repbase;    DNA;    INV; 4596 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: incomplete.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_DEr_B.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4596
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Incomplete sequence.
XX
SQ   Sequence 4596 BP; 1698 A; 1017 C; 722 G; 1159 T; 0 other;
     agttaccaca gtcaccacac cccctaaacc cccacgccta caccactgaa cacatcgacg        60
     cccatgggca ctccggtaca acgaaccggg aaacgaataa acaaatgagt caacaatgta       120
     tctacaacgt atcgacatcc ggccaaatgc tgacactaac atcagcagac cagacggcaa       180
     gaatgccgat gcagcataag aacctagcat aacccttata tataagaact atgtacttag       240
     atttgtaggc ttcttgagaa gaacgaaaga aatatagaat tactcttaag tttgaaccca       300
     aagcgtgaag ttgtgttact gaatcccata caagtgcctg aacaaaatct catgcaaagt       360
     gccgacagcc gactataagc gaaccaccca acatctttac tgctgttata ttcacctccc       420
     atcattcggc ccgaatggta actggcgcag ccggtaggat gctttcctac atctatacat       480
     taacttacct gtaagtaaag aaaaatgtaa aaacaaagca taagtgatag ctcaataagt       540
     aaagaatctt aaataaaaag ggaaaaatat attctgctac agtgacaaca aaatgtaaac       600
     agtgagttgt gagctgcaca cggtgacgta taagtgcttg ggtaaaatta aaaagaaaaa       660
     tatttaaaca tagccaacag acaacccaag taatatgcgc gaaattgttt gcagcgaaca       720
     acgcattggg tcagcaaaat aaaaaaaaaa gaaagaattt tttttatcgc ataacatgtt       780
     acaacacaaa ttttttttac ttttctgcta ttgtgacgac aaaatataaa cagtgaattg       840
     tgagctgcac atgatgacgc ataagtaaag tttaaaagaa aaattattaa agcatagcca       900
     acaaacaaac cgagtaatgt gcgctaaatt gtgtgcagca aacaacgcat tgggtcagca       960
     aaataagtaa aaaatagcca cggtataaca aatttaatag tctctaccta aaattccacg      1020
     gcccaaggta tcccctacaa tggcaaatag aatatcaaac ataaccatat attacttaat      1080
     aaactatctt gcaattatgt cacaactcac attaaatcac tgcaaatcaa atactctatg      1140
     atatgggtct tatgctatac ggctcacgaa acaagcgtgt ttcgtgccgc tgtggcagac      1200
     cacccatgca tacatatata tatacctaaa tacacaatat gcacacaagc ttgcaaccaa      1260
     cgtatataca cacatataca ccaaattacg cacacaagcc tgcgaaccga tactctatga      1320
     tatgggtcta tgctatacgg ctcagggtac aagcttgtgc cttgatgctg tggcatatca      1380
     cgcatatacg catagatatc caacgtatat acacatatat acaccaaatt acgcacacaa      1440
     gcctgcgaac cgatactcta tgatatgggt ctatgctata cggctcaggg tacaagcttg      1500
     tgccttgatg ctgtggcata tcacgcatat acgcatggat atccaacgta tatacacatg      1560
     tatacaccaa attacgcaca caagcctgcg aaccgatact ctatgatatg ggtctatgct      1620
     atacggctca gggtacaagc ttgtgccttg atgctgtggc atatcacgca aatacgcata      1680
     gatatccaac gtatatacac atatatacac caaattacgc acacaagcct gcgaaccgat      1740
     actctatgat atgggtctat gctatacggc tcagggtaca agcttgtgcc ttgatgctgt      1800
     ggcatatcac gcatatacgc atagatatcc aacgtatata cacatgtata caccaaatta      1860
     cgcacacaag cctgcgaacc gatactctat gatatgggtc tatgctatac ggctcagggt      1920
     acaagcttgt gccttgatgc tgtggcatat cacgcatata cgcatagata tccaacgtat      1980
     atacacatat atacaccaaa taacgcacac aagcctgcga accgatactc tatgatatgg      2040
     gtctatgcta tacggctcag ggtacaagct tgtgccttga tgctgtggca tatcacgcat      2100
     atacgcatag atatccaacg tatatacaca tatatacaat aaatcacgca cacaagcttg      2160
     cgaaccgata ctctgtgata tgggtcctat gctatacggc tcatgataca agcttgtgtc      2220
     atgacgcagt ggcataccac gcatatacac atagatattc aaacacagta tatgtacaca      2280
     tgctacaacc aataaatacg cttatacata taaccataaa attactgcaa tacgaaaaaa      2340
     caatgagaca ctttacccca acctacccta acaattaaag tttatacgct tccactcgag      2400
     taccgaatgg ctaatgtaac acaataccaa tagtcacgcc gtcagcataa acaaacaatt      2460
     tatactcttg cacaccaaat acaatatgtg ttatgcgatt atacttgtac atatatatac      2520
     gaatacgtat atgcatagtg agtggccaag cctatcgagt caaaattctt tcttttttat      2580
     aatcgtcgac attcacttat gctatgttcc gaatactata aactatgtat acaacaattt      2640
     tataatacca actatattac agatattgaa tcacataaaa accatacaaa cctatataca      2700
     ttaagaaatt tatacgcaca aatacaatat atacatatac aatacaatac atacttatac      2760
     acacttataa aaaattccac attatattaa aacttgttca ttattttctt taatataaat      2820
     tccacatcag aaacaaattt ttttttaatt aggttaaatg tccaagaaat taactcagaa      2880
     taaatggatt aggcagtctc gtgaaagctg tcacgggcaa tatggatgcc gaagacgcca      2940
     gagaaatagg taaagacatc gaaaatatta aaatagccct ttcgaccgtt aacacaaatt      3000
     accaaactca agatgtattc aataatgaaa ttttaattag attcgagaac attacaaatc      3060
     atattaataa tgaacaagtt ctaataacaa cattctttga aaatatgcaa aataaaattt      3120
     ataaagaaga aaataccttg gaaaaattac agtatataaa taggattaac tataacttag      3180
     aattactact taatcacttg aacgatataa ttgaaagcat gttattagct aaaataaatg      3240
     taatacctag atttatatta accgaacaag aaatatataa aattaaaatg ttactggaaa      3300
     atcaaaatat tacgataaaa agcgaacaac acatttacga tttgttaaaa atgaacacgt      3360
     taagctacga aaataacata atttttacta tccaaatacc tatttttgaa aaagataatt      3420
     acaaaatagc cagattaatt cccttaccaa ttaataataa atactttgtt atgattccta      3480
     actatttaat atataagaat aatgttaata agtactactt gactcaaaac tgccccaaag      3540
     tagacgacac gtttatatgc aacaaagacg catacatcaa cacaccgcaa aatgacacct      3600
     gcactcaaca attattggat tccaagaaca gctcctgcga tgtgcaagag agaggccctg      3660
     ttgcagacgt attcgaggcg gaaaaaggct atattttcgc attcaacgcc aataacctga      3720
     aggctcagct aaaaaacggt agcgaaatca ctataaatgg ctcagctatc atcaaatacg      3780
     tgaacgaaac tatacgcatc aatggcatag agtacgacaa cggagttgag acaacctttg      3840
     agcacttaga cctaatccta ccccccctta aggaaatgac caggaataaa actgtggaaa      3900
     tactgagttt acaaaacatt cacctagagg ccatagaaac atcaaataag attctgacta      3960
     tccaccaaac cgccacacaa cacgcttgga ccctttacat tctactgggt ttcgtcgcca      4020
     tcctcactgt tactgcatgg ctgcatcgac gcacaaaaca cgtattccac gtacaggatc      4080
     acaatcacca cctgcctatt tacgctccag caataccttc gctatggccg tcgcttcaaa      4140
     ctggggaggg aggagttacc acagtcacca caccccctaa acccccacgc ctacaccact      4200
     gaacacatcg acgcccatgg gcactccggt acaacgaacc gggaaacgaa taaacaaatg      4260
     agtcaacaat gtatctacaa cgtatcgaca tccggccaaa tgctgacact aacatcagca      4320
     gaccagacgg caagaatgcc gatgcagcat aagaacctag cataaccctt atatataaga      4380
     actatgtact tagatttgta ggcttcttga gaagaacgaa agaaatatag aattactctt      4440
     aagtttgaac ccaaagcgtg aagttgtgtt actgaatccc atacaagtgc ctgaacaaaa      4500
     tctcatgcaa agtgccgaca gccgactata agcgaaccac ccaacatctt tactgctgtt      4560
     atattcacct cccatcattc ggcccgaatg gtaact                                4596
//
ID   Pifo_Dm_A   repbase;    DNA;    INV; 7699 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_Dm_A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7699
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs(1-432, and
CC   7257-7699). ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           6025..7302
FT                 /product="Pifo_Dm_A_3p"
FT                 /note="ENV."
FT                 /translation="MDAEDAREIGKDIENIKIALSTVNTNYQTQDVFNNEI
FT                 LIRFENITNHINNEQVLITTFFENMQNKIYKEENTLEKLQYINRINYNLEL
FT                 LLNHLNDIIESMLLAKINVIPRFILTEQEIYKIKMLLENQNITIKSEQHIY
FT                 DLLKMNTLSYENNIIFTIQIPIFEKDNYKIARLIPLPINNKYFVMIPNYLI
FT                 YKNNVNKYYLTQNCPKVDDTFICNKDAYINTPQNDTCTQQLLDSKNSSCDV
FT                 QERGPVADVFEAEKGYIFAFNANNLKAQLKNGSEITINGSAIIKYVNETIR
FT                 INGIEYDNGVETTFEHLVLILPPLKEMTRNKTVEILSLQNIHLEAIETSNK
FT                 ILTIHQTATQHAWTLYILLGFVAILTVTAWLHRRTKHVFHVQDHNHHLPIY
FT                 APAIPSLWPSLQTGEGGVTTVTTPPKPPRLHH"
XX
SQ   Sequence 7699 BP; 2833 A; 1745 C; 1174 G; 1947 T; 0 other;
     agttaccaca gtcaccacac cccctaaacc cccacgccta caccactgaa cacatcgacg        60
     cccatgggca ctccggtaca acgaaccggg aaacgaataa acaaatgggt caacaatgta       120
     tcgacatccg gccaaatgcc gacactaaca tcagcagacc agacggcaag aatgccgatg       180
     cagcataaga acctagcata acccttatat ataagaacta tgtacttaga tttgtaggct       240
     tcttgagaag aacgaaagaa atatagaatc actcttaagt ttgaacccaa agcgtgaagt       300
     tgtgttactg aatcccatac aagtgcctga acaaaatctc atgcaaagtg ccgacagccg       360
     actataagcg aaccacccaa catctttact gctgttatat tcacctccca tcattcggcc       420
     cgaatggtaa ctggcgcagc cggtaggatg ctttcctaca tctatacatt aacttacctg       480
     taagtaaaga aaaatgtaaa aaacaaagca taagtgatag ctcaataagt aaagaatctt       540
     aaataaaaag ggaaaatata ttctgctaca gtgacaacaa aatgtaaaca gtgagttgtg       600
     agctgcacac ggtgacgtat aagtgcttgg gtaaaattaa aaagaaaaat tattaaagca       660
     tagccaacaa acaaaccgag taatgtgcgc taaattgtgt gtagcaaaca acgcattggg       720
     tcagcaaaat aagtaaaaaa tagccacggt ataacaaatt taatagtctc tacctaaaat       780
     tccacggcct agggtatccc ctacaatggc aaatagaata tcaaacataa ccatatatta       840
     cttaataaac tatcttgcaa ttatgtcaca actcacatta aatcactgca aatcaaatac       900
     tctatgatat gggtcttatg ctatacggct cacgaaacaa gcgtgtttcg tgccgctgtg       960
     gcataccatc catgcataca tatatatata cctaaataca caatatgcac acaagcttgc      1020
     aaacaacgta tatacacaca tatacaccaa attacgcaca caagcctgcg aaccgatact      1080
     ctatgatatg ggtctatgct atacggctca gggtacaagc ttgtgccttg atgctgtggc      1140
     atatcacgca tatacgcata gatatccaac gtatatacac atatatacac caaattacgc      1200
     acacaagcct gcgaaccgat actctatgat atgggtctat gctatacggc tcagggtaca      1260
     agcttgtgcc ttgatgctgt ggcatatcac gcatatacgc atagatatcc aacgtatata      1320
     cacatatata caataaatca cgcacacaag cttgcgaacc gatactctgt gatatgggtc      1380
     ctatgctata cggctcatga tacaagcttg tgtcatgacg cagtggcata ccacgcatat      1440
     acacatagat attcaaacac agtatatgta cacatgctac aaccaataaa tacgcttata      1500
     catataacca taaaattact gcaatacgaa aaaacaatga gacactttac cccaacctac      1560
     cctaacaatt aaagtttata cgcttccact cgagtaccga atggctaatg taacacaata      1620
     ccaatagtca cgccgtcagc ataaacaaac aatttacact cttgcacacc aaatacaata      1680
     tgtgttatgc gattatactt gtacatatat atacgaatac gtatatgaat agtgagtggc      1740
     caagcctatc gagtcaaaat tctttctttt ttataatcgt cgacattcac ttatgctatg      1800
     ttccgaatac tataaactat gtatacaaca attttataat accaactata ttacagatat      1860
     tgaatcacat aaaaaccata caaaacctat atacattaag aaatttatac gcacaaatac      1920
     aatacaatac atacttatac acacttataa aaaattccac attatattaa aacttgttcg      1980
     ttattttctt taatataaat tccacatcag aaacaaaatt tttttttaat taggttaaat      2040
     gtccaagaaa ttaactcaga atatcaagaa gaccgcacag tctgtattag gagtccccac      2100
     cccagttagc agaactatac gccccaatac ccgttcttct gggttgccta ttgtccctga      2160
     aataattgat caccctctta ccccgaacat gatggattca ggcaatgctt ccaataattc      2220
     agctcattcc gttcgccctg gaccaccctc tttaacgccc accgttagtg gaataagctc      2280
     cctgtcaacc acatttaaac ctaaagatat catggctttt gtcgaacatt taccaacgtt      2340
     tgacggaacc cccagatatt tagacaggtt cattacaagc gtagaagaaa ttctcatgtt      2400
     aatcagaggg gcagatcaca cgccatatgg tttgctcact ttgaggacaa tcaggaacaa      2460
     aatagtagac agagccgacg aagcgttaga actagcgaat acaccgttag tttgggacga      2520
     aatcaaaggc aatctcatta ggctctactc tagtaagaag agcgaggcta gtttgctgag      2580
     tgaaatgagt tcattttcag accgccaaag tttgggacaa ttattctttg ggctttcaaa      2640
     aatcaaaagc caattgttct ccatactcaa aaacactgaa cttaaccata acatagttga      2700
     ggcaaaaaga acagtgtata atgaggtctg cctcaatgca ttcatcaccg gacttaggga      2760
     gccgctcaag acattcattc gtttgaaggc ccctcagaca atagaacaag cttacgaaca      2820
     atgccaaatt gagcagtcct tatacagaac taacaatcgc ggacccaacg aaacgttcac      2880
     taaaaataga cgtgataatc aaaacacccg agaccgacgt cacgacggac gaactaataa      2940
     cgatcgtaat gcaccatacc caaataataa ctacaatcaa caacccaact ctagggaaac      3000
     caatcaatcc agtacagcaa acccttttag gactcagtct ggtcgcctca ataatataga      3060
     ggatgacaca cccgacacaa attttcaaca ggcagcctcc gtaacccatc agggtacata      3120
     agtccagcaa cccacgagtc ctcactcccc ttcattgagg taaatctccc ctttagtccc      3180
     catttaaaat tcctaataga taccggttct acgcattctt tcattgatcc taagcatata      3240
     gaatcaaaag attgcgtggg cctagaaaaa cctttaacgc tcaaaacagc cctaaatacc      3300
     tttgtacttc aaaaaaaaat ttgtcattcc ttttccatct gagtttaaga cccaggggaa      3360
     aatgaatcta ttgccgttta gattccactc cttttttgat ggattattgg gcatggactc      3420
     actttcattt ttaaaggcaa aaatagatat attaaattca caattaaaga catctaacac      3480
     aattttgcct ataattaact ataccaacca gacctccaac gtgttttgca ttacagccca      3540
     tactaaaacc acaataccct tgccggtaca aaatgatcaa ggggattttc tctatgacac      3600
     gacttatatt aataaagacc ttatcatatc agggggcctt tacaaatcaa ataaccactt      3660
     aacaaccttc gaagtggcca actacagaga ttctgaccaa ctcctatatc tcgaaagccc      3720
     tcttaaaggc ataccatatg tcaaagctga ctttgtagag cttaataaca tatcttctga      3780
     cccacccaag ctaccagact tagtaaaccc cttagataac ttaaaaatgg agcacctcaa      3840
     cccggaagag aaacaaaacc taatcacatt atgtaaagaa ttctcagaca ttttttttaa      3900
     cgaaacagta aaactctcat ttacaaataa aattacgcat tctatcccta ccacggacaa      3960
     taataagtgt cttaaaacaa tccctcaaac ctaacaaatt gtgtgctata tttgcccctg      4020
     acgatatttt tgaaatcatt aataaagctt accccgattc acgtaaggtc ctatagatat      4080
     ccgtacattc acaaagagga agtaaagaaa caaattaatt ctatgctaaa ccaagatata      4140
     atcagatcta gttactcgcc ctggagtgct ccggtttggg tagtccccaa gaaagccggg      4200
     cccaatgggg aacaaaaatg gagattggtt atagattatc gaaaactcaa tgataaaacc      4260
     atctccgata ggtacccaat accaaacata aatgatatac tagatcgcat agggaaagcc      4320
     aaatacttta ccaccctcga tttggcaagt gggtttcatc aaattgagat gaacccagac      4380
     gacattgcca aaacggcctt tacagtagaa ggagggcatt atgaatttat aagaatgcct      4440
     ttcggcttaa aaaatgctcc cgctactttc caaagagtaa tggacagcat tttaggtgac      4500
     gtaataggcc tcaattgtct ggtatacttg gacgatataa tcgttttttc tgcttccctc      4560
     caagaacatg taatacattt aacttcaata tttcaaaaac ttagagatgc aaactttaaa      4620
     gtacaattaa ataagtccga ttttcttagg aaagaaaccg aattcctcgg acacatcgtc      4680
     acccaagaag gaatcaaacc aaatccagac aaaatagcgg ctataaagaa tttcccttgt      4740
     cctaagaata agaaagaaat taaatctttc ttggggttat tagggtacta taggaaatta      4800
     ttagaacttg tgaaacttgt ctaaaactaa agtacgatag acacccacag aaaattccat      4860
     ttcaaattac agaaaccccc cttaaacccc tcgacatcgt tcatattgat atttacacta      4920
     tcaacaacaa ctacaatttg acaataatag acaagttctc taaatttgca gccgcctacc      4980
     caattcctaa tagaaactgt attaacgtgg ttaaatcttt aaaacatttt ataagccaat      5040
     ttggcatacc aaaaaagcta gtttacgatc aaggggccga attttctagc gacatgttta      5100
     gcaacttctg ctcacaatac aatatcgtct tacatgtcac atcctttcaa caatcctcta      5160
     gtaactcccc tgtagaacgc cttcactcca catttacaga aatctaccga ataattatag      5220
     acactaggaa acaactaaaa cttaatacgg aacatgacga gacaatgtca gaaacactaa      5280
     ttacatacaa tagcgcaatt cactcagcca cagaacatac cccgttcgaa ctatttaccg      5340
     gacgtaccca cacatttgaa aacaacacta aattcagcaa cgaacatgat tacctagtta      5400
     aactgaacga atttaaacaa aaaatatatc cactcatcgc agacaaatta tcggaaaagg      5460
     cattacaaag aacacttaaa attaatgaaa caaggacacc ccccgctacc ctagaacccg      5520
     aaacattggt actcagttag gaaaatagga ggaataaaat aacacctagg ttctcattac      5580
     acaaagtttt acacgaccaa ggcccaaccc tggttaccac taggaatcaa aaactacaca      5640
     aatctaaaat acgaagaatt atactaaaga aaaaataaat tttattgcag gttcaccatt      5700
     ccaacaattt atgctatttc tatacaaccc ctgactaata atacccctat agcaaaaata      5760
     gaattggggc aagcccttat tataaataga tataagagag ttagccatgt tattaacctg      5820
     gaagaattta gtaaatgtat cgaacaattt cataaaacac tccagacatt taaatatgat      5880
     gacaccctaa tagattccct agccatacta aaatccaaac taggacaggc ccaaacaaaa      5940
     cttaatgcat taaccccact caagagaaac aaacgcggat taattaatgg attaggcagt      6000
     ctcgtgaaag ctgtcacggg caatatggat gccgaagacg ccagagaaat aggtaaagac      6060
     atcgaaaata ttaaaatagc cctttcgacc gttaacacaa attaccaaac tcaagatgta      6120
     ttcaataatg aaattttaat tagattcgag aacattacaa atcatattaa taatgaacaa      6180
     gttctaataa caacattctt tgaaaatatg caaaataaaa tttataaaga agaaaatacc      6240
     ttggaaaaat tacagtatat aaataggatt aactataact tagaattact acttaatcac      6300
     ttgaacgata taattgaaag catgttatta gctaaaataa atgtaatacc tagatttata      6360
     ttaaccgaac aagaaatata taaaattaaa atgttactgg aaaatcaaaa tattacgata      6420
     aaaagcgaac aacacattta cgatttgtta aaaatgaaca cgttaagcta cgaaaataac      6480
     ataattttta ctatccaaat acctattttt gaaaaagata attacaaaat agccagatta      6540
     attcccttac caattaataa taaatacttt gttatgattc ctaactattt aatatataag      6600
     aataatgtta ataagtacta cttgactcaa aactgcccca aagtagacga cacgtttata      6660
     tgcaacaaag acgcatacat caacacaccg caaaatgaca cctgcactca acaattattg      6720
     gattccaaga acagctcctg cgatgtgcaa gagagaggcc ctgttgcaga cgtattcgag      6780
     gcggaaaaag gctatatttt cgcattcaac gccaataacc tgaaggctca gctaaaaaac      6840
     ggtagcgaaa tcactataaa tggctcagct atcatcaaat acgtgaacga aactatacgc      6900
     atcaatggca tagagtacga caacggagtt gagacaacct ttgagcactt agtcctaatc      6960
     ctaccccccc ttaaggaaat gaccaggaat aaaactgtgg aaatactgag tttacaaaac      7020
     attcacctag aggccataga aacatcaaat aagattctga ctatccacca aaccgccaca      7080
     caacacgctt ggacccttta cattctactg ggtttcgtcg ccatcctcac tgttactgca      7140
     tggctgcatc gacgcacaaa acacgtattc catgtacagg atcacaatca ccacctgcct      7200
     atttacgctc cagcaatacc ttcgctatgg ccgtcgcttc aaactggaga gggaggagtt      7260
     accacagtca ccacaccccc taaaccccca cgcctacacc actgaacaca tcgacgccca      7320
     tgggcactcc ggtacaacga accgggaaac gaataaacaa atgggtcaac aatgtatcta      7380
     caatgtatcg acatccggcc aaatgccgac actaacatca gcagaccaga cggcaagaat      7440
     gccgatgcag cataagaacc tagcataacc cttatatata agaactatgt acttagattt      7500
     gtaggcttct tgagaagaac gaaagaaata tagaatcact cttaagtttg aacccaaagc      7560
     gtgaagttgt gttactggat cccatacaag tgcctgaaca aaatctcatg caaagtgccg      7620
     acagccgact ataagcgaac cacccaacat ctttactgct gttatattca cctcccatca      7680
     ttcggcccga atggtaact                                                   7699
//
ID   Pifo_Dm_B   repbase;    DNA;    INV; 8848 BP.
XX
AC   .
XX
DT   22-NOV-2021 (Rel. 26.12, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_Dm_B.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-8848
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs(1-443, and
CC   8406-8848). ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           2272..3351
FT                 /product="Pifo_Dm_B_1p"
FT                 /translation="MSKKLTQNIKKTAQSVLGVPTPVSRTIRPNTRSSGLP
FT                 IVPEIIDHPLTPNMMDSGNASNNSAHSVRPGPPSLTPTVSGISSLSTTFKP
FT                 KDIMAFVEHLPTFDGTPRYLDRFITSVEEILMLIRGADHTPYGLLTLRTIR
FT                 NKIVDRADEALELSNTPLVWDEIKGNLIRLYSSKKSEASLLSEMSSFSDRQ
FT                 SLGQLFFGLSKIKSQLFSILKNTELNHNIVEAKRTVYNEVCLNAFITGLRE
FT                 PLKTFIRLKAPQTIEQAYEQCQIEQSLYRTNNRGPNETFTKNRRDNQNTRD
FT                 RRHDGRTNNDRNAPYPNNNYNQQPNSRETNQSSTANPFRTQSGRLNNIEDD
FT                 TPDTNFQQAASVTHQGT"
FT   CDS           6817..8451
FT                 /product="Pifo_Dm_B_3p"
FT                 /translation="RKNKFYCRFTIPTIYAISIQPLTNNTPIAKIELGQAL
FT                 IINRYKRVRHVINLEEFSKCIEQFHKTLQTFKYDDTLIDSLAILKSKLGQA
FT                 QTKLNALTPLKRNKRGLINGLGSLVKAVTGNMDAEDAREIGKDIENIKIAL
FT                 STVNTNYQTQDVFNNEILIRFENITNHINNEQVLITTFFENMQNKIYKEEN
FT                 TLEKLQYINRINYNLELLLNHLNDIIESMLLAKINVIPRFILTEQEIYKIK
FT                 MLLENQNITIKSEQHIYDLLKMNTLSYENNIIFTIQIPIFEKDNYKIARLI
FT                 PLPINNKYFVMIPNYLIYKNNVNKYYLTQNCPKVDDTFICNKDAYINTPQN
FT                 DTCTQQLLDSKNSSCDVQERGPVADVFEAEKGYIFAFNANNLKAQLKNGSE
FT                 ITINGSAIIKYVNETIRINGIEYDNGVETTFEHLVLILPPLKEMTRNKTVE
FT                 ILSLQNIHLEAIETSNKILTIHQTATQHAWTLYILLGFVAILTVTAWLHRR
FT                 TKHVFHVQDHNHHLPIYAPAIPSLWPSLQTGEGGVTTVTTPPKPPRLHH"
FT   CDS           join(3300..4295,4299..5525,5529..6824)
FT                 /product="Pifo_Dm_B_2p"
FT                 /translation="HTRYKFSTGSLRNPSGYISPATHESSLPFIEINLPFS
FT                 PHLKSLIYTGSTHSFIDPKHIESKDCVGLEKPLTLKTALNTFVLQKKFVIP
FT                 FPSEFKTQGKMNLLPFRFHSFFDGLLGMDSLSFLKAKIDILNSQLKTSNTI
FT                 LPIINYTNQTSNVFCITAHTKTTIPLPVQNDQGDFLYDTTYINKDLIISGG
FT                 LYKSNNHLTTFEVANYRDSDQLLYLESPLKGIPYVKADFVELNNISSDPPK
FT                 LPDLVNPLDNLKMEHLNPEEKQNLITLCKEFSDIFFNETVKLSFTNKITHS
FT                 IPTTDNTPIHVRSYRYPYIHKEEVKKQINSMLNQDIIRSSSPWSAPVWVVP
FT                 KKAGPNGEQKWRLVIDYRKLNDKTISDRYPIPNINDILDRIGKAKYFTTLD
FT                 LASGFHQIEMNPDDIAKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMDSIL
FT                 GDVIGLNCLVYLDDIIVFSASLQEHVIHLTSIFQKLRDANFKVQLNKSDFL
FT                 RKETEFLGHIVTQEGIKPNPDKIAAIKNFPCPKNKKEIKSFLGLLGYYRKF
FT                 IKDFAKITKPLTKQLKGNNKTITIDDEFTKTVDFCKILLTNDPILQYPDFT
FT                 KPFILTTDASNFALGAVLSQGTLQNDKPVCFASRTLSDTEVNYSTIEKGML
FT                 AIIWAVQYYRPYLFGTKFTIVTDHKPLTWLMNFKQPNSKVIRWRLQLLEYD
FT                 FEVVYKNGSQNVIADALSRSNANLNHNEIVPNSPYECPVSDPLNDFNIQLV
FT                 IKLSQDTGYNTSTPSKHKLRREYYRLLFQLEDIISVLKQSLKPNKLCAIFA
FT                 PDDIFEIINKAYQMHFPTNGPFKIVRCLSFLPELTDDSEITRTIVDYHTKN
FT                 NHRGIDETFLHLKRKIFFPYMKDKITKIIRTCETCLKLKYDRHPQKIPFQI
FT                 TETPLKPLDIVHIDIYTINNNYNLTIIDKFSKFAAAYPIPNRNCINVVKSL
FT                 KHFISQFGIPKKLVYDQGAEFSSDMFSNFCSQYNIVLHVTSFQQSSSNSPV
FT                 ERLHSTFTEIYRIIIDTRKQLKLNTEHDETMSETLITYNSAIHSATEHTPF
FT                 ELFTGRTHTFENNTKFSNEHDYLVKLNEFKQKIYPLIADKLSEKALQRTLK
FT                 INETRTPPATLEPETLVLRKENRRNKITPRFSLHKVLHDQGPTLVTTRNQK
FT                 LHKSKIRRIILKKK"
XX
SQ   Sequence 8848 BP; 3254 A; 2012 C; 1343 G; 2239 T; 0 other;
     agttaccaca gtcaccacac cccctaaacc cccacgccta caccactgaa cacatcgacg        60
     cccatgggca ctccggtaca acgaaccggg aaacgaataa acaaatgggt caacaatgta       120
     tctacaatgt atcgacatcc ggccaaatgc cgacactaac atcagcagac cagacggcaa       180
     gaatgccgat gcagcataag aacctagcat aacccttata tataagaact atgtacttag       240
     atttggaggc ttcttgagaa gaacgaaaga aatatagaat cactcttaag tttgaaccca       300
     aagcgtgaag ttgtgttact gaatcccata caagtgcctg aacaaaatct catgcaaagt       360
     gccgacagcc gactataagc gaaccaccca acatctttac tgctgttata ttcacctccc       420
     atcattcggc ccgaatggta actggcgcag ccggtaggat gctttcctac atctatacat       480
     taacttacct gtaagtaaag aaaaatgtaa aaaacaaagc ataagtgata gctcaataag       540
     taaagaatct taaataaaaa gggaaaatat attctgctac agtgacaaca aaatgtaaac       600
     agtgagttgt gagctgcaca cggtgacgta taagtgcttg ggtaaaatta aaaagaaaaa       660
     tatttaaaca tagccaacag acaacccaag taatatgcgc gaaattgttt gcagcgaaca       720
     acgcattggg tcagcaaaat aaaaaaaaaa agaaggattt tttttatcgc ataacatgtt       780
     acaacacaaa ttttttttac ttttctgcta ttgtgacgac aaaatataaa cagtgaattg       840
     tgagctgcac atgatgacgc ataagtaaag tttaaaagaa aaattattaa agcatagcca       900
     acaaacaaac cgagtaatgt gcgctaaatt gtgtgtagca aacaacgcat tgggtcagca       960
     aaataagtaa aaaatagcca cggtataaca aatttaatag tctctaccta aaattccacg      1020
     gcctaaggta tcccctacga tggcaaatag aatatcaaac ataaccatat attacttaat      1080
     aaactatctt gcaattatgt cacaactcac attaaatcac tgcaaatcaa atactctatg      1140
     atatgggtct catgctatac ggctcatggt acaagcttgt cccatgatgc tgtggcagac      1200
     cacccatgca tacatatata tatacctaaa tacacaatat gcacacaagc ttgcaaccaa      1260
     cgtatataca cacatataca ccaaattacg cacacaagcc tgcgaaccga tactctatga      1320
     tatgggtcta tgctatacgg ctcagggtac aagcttgtgc cttgatgctg tggcatatca      1380
     cgcatatacg catagatatc caacgtatat acacatatat acaccaaatt acgcacacaa      1440
     gcctgcgaac cgatactcta tgatatgggt ctatgctata cggctcaggg tacaagcttg      1500
     tgccttgatg ctgtggcata tcacgcatat acgcatagat atccaacgta tatacacata      1560
     tatacaataa atcacgcaca caagcttgcg aaccgatact ctgtgatatg ggtcctatgc      1620
     tatacggctc acgatacaag cttgtgtcat gacgcagtgg cataccacgc atatacacat      1680
     agatattcaa acacagtata tgtacacatg ctacaaccaa taaatacgct tatacatata      1740
     accataaaat tactgcaata cgaaaaaaca atgagacact ttaccccaac ctaccctaac      1800
     aattaaagtt tatacgcttc cactcgagta ccgaatggct aatgtaacac aataccaata      1860
     gtcacgccgt cagcataaac aaacaattta cactcttgca caccaaatac aatatgtgtt      1920
     atgcgattat acttgtacat atatatacga atacgtatat gcatagtgag tggccaagcc      1980
     tatcgagtca aaattctttc ttttttataa tcgtcgacat tcacttatgc tatgttccga      2040
     atactataaa ctatgtatac aacaatttta taataccaac tatattacag atattgaatc      2100
     acataaaaac catacaaaac ctatatacat taagaaattt atacgcacaa atacaataca      2160
     atacatactt atacacactt ataaaaaatt ccacattata ttaaaacttg ttcattattt      2220
     tctttaatat aaattccaca tcagaaacaa aatttttttt aattaggtta aatgtccaag      2280
     aaattaactc agaatatcaa gaagaccgca cagtctgtat taggagtccc caccccagtt      2340
     agcagaacta tacgccccaa tacccgttct tctgggttgc ctattgtccc tgaaataatt      2400
     gatcaccctc ttaccccgaa catgatggat tcaggcaatg cttccaataa ttcagctcat      2460
     tccgttcgcc ctggaccacc ctctttaacg cccaccgtta gtggaataag ctccctgtca      2520
     accacattta aacctaaaga tatcatggct tttgtcgaac atttaccaac gtttgacgga      2580
     acccccagat atttagacag gttcattaca agcgtagaag aaattctcat gttaatcaga      2640
     ggggcagatc acacgccata tggtttgctc actttgagga caatcaggaa caaaatagta      2700
     gacagagccg acgaagcgtt agaactatcg aatacaccgt tagtttggga cgaaatcaaa      2760
     ggcaatctca ttaggctcta ctctagtaag aagagcgagg ctagtttgct gagtgaaatg      2820
     agttcatttt cagaccgcca aagtttggga caattattct ttgggctttc aaaaatcaaa      2880
     agccaattgt tctccatact caaaaacact gaacttaacc ataacatagt tgaggcaaaa      2940
     agaacagtgt ataatgaggt ctgcctcaat gcattcatca ccggacttag ggagccgctc      3000
     aagacattca ttcgtttgaa ggcccctcag acaatagaac aagcttacga acaatgccaa      3060
     attgagcagt ccttatacag aactaacaat cgcggaccca acgaaacgtt cactaaaaat      3120
     agacgtgata atcaaaacac ccgagaccga cgtcacgacg gacgaactaa taacgatcgt      3180
     aatgcaccat acccaaataa taactacaat caacaaccca actctaggga aaccaatcaa      3240
     tccagtacag caaacccttt taggactcag tctggtcgcc tcaataatat agaggatgac      3300
     acacccgata caaattttca acaggcagcc tccgtaaccc atcagggtac ataagtccag      3360
     caacccacga gtcctcactc cccttcattg agataaatct cccctttagt ccccatttaa      3420
     aatccctaat atataccggt tctacgcatt ctttcattga tcctaagcat atagaatcaa      3480
     aagattgcgt gggcctagaa aaacctttaa cgctcaaaac agccctaaat acctttgtac      3540
     ttcaaaaaaa atttgtcatt ccttttccat ctgagtttaa gacccagggg aaaatgaatc      3600
     tattgccgtt tagattccac tccttttttg atggattatt gggcatggac tcactttcat      3660
     ttttaaaggc aaaaatagat atattaaatt cacaattaaa gacatctaac acaattttgc      3720
     ctataattaa ctataccaac cagacctcca acgtgttttg cattacagcc catactaaaa      3780
     ccacaatacc cttgccggta caaaatgatc aaggggattt tctctatgac acgacttata      3840
     ttaataaaga ccttatcata tcagggggcc tttacaaatc aaataaccac ttaacaacct      3900
     tcgaagtggc caactacaga gattctgacc aactcctata tctcgaaagc cctcttaaag      3960
     gcataccata tgtcaaagct gactttgtag agcttaataa catatcttct gacccaccca      4020
     agctaccaga cttagtaaac cccttagata acttaaaaat ggagcacctc aacccggaag      4080
     agaagcaaaa cctaatcaca ttatgtaaag aattctcaga catttttttt aacgaaacag      4140
     taaaactctc atttacaaat aaaattacgc attctatccc taccacggac aataccccga      4200
     ttcacgtaag gtcctataga tatccgtaca ttcacaaaga ggaagtaaag aaacaaatta      4260
     attctatgct aaaccaagat ataatcagat ctagttaatc gccctggagt gctccggttt      4320
     gggtagtccc caagaaagcc gggcccaatg gggaacaaaa atggagattg gttatagatt      4380
     atcgaaaact caatgataaa accatctccg ataggtaccc aataccaaac ataaatgata      4440
     tactagatcg catagggaaa gccaaatact ttaccaccct cgatttggca agtgggtttc      4500
     atcaaattga gatgaaccca gacgacattg ccaaaacggc ctttacagta gagggagggc      4560
     attatgaatt tataagaatg cctttcggct taaaaaatgc tcccgctact ttccaaagag      4620
     taatggacag cattttaggt gacgtaatag gcctcaattg tctggtatac ttggacgata      4680
     taatcgtttt ttctgcttcc ctccaagaac atgtaataca tttaacttca atatttcaaa      4740
     aacttagaga tgcaaacttt aaagtacaat taaataagtc cgattttctt aggaaagaaa      4800
     ccgaattcct cggacacatc gtcacccaag aaggaatcaa accaaatcca gacaaaatag      4860
     cggctataaa gaatttccct tgtcctaaga ataagaaaga aattaaatct ttcttggggt      4920
     tattagggta ctataggaaa tttataaaag acttcgcaaa aattactaag cctttaacta      4980
     aacaactaaa aggtaacaac aagactatca ccatagacga cgaattcaca aagacggtcg      5040
     atttctgtaa aattttactt accaatgacc ccatactcca ataccctgac tttacaaaac      5100
     cttttatttt aacgacagac gcaagtaatt tcgcattggg agctgtcctt tcacaaggca      5160
     ctctacaaaa tgataagcca gtctgtttcg ctagccgaac tctctcagac acagaagtaa      5220
     actactcgac aatcgaaaaa ggaatgttag ctattatttg ggctgtccaa tactatagac      5280
     cctacctctt cggaacaaaa ttcaccatag taacagacca caaacctcta acatggctta      5340
     tgaacttcaa acagcctaat tccaaagtaa ttcgttggag actccaactc ttagaatatg      5400
     actttgaggt tgtctataaa aatggctcac aaaacgtcat tgccgacgcg cttagccgct      5460
     cgaacgctaa tctcaatcac aacgagatag tcccaaattc accgtacgaa tgccctgtat      5520
     cagactaacc actcaacgat ttcaatattc agttggtcat aaagttaagc caagatacag      5580
     gttacaatac ctcaactcct tctaaacaca aactgcgacg agaatactat agacttcttt      5640
     ttcaactcga agacattata agtgtcttaa aacaatccct caaacctaac aaattgtgtg      5700
     ctatatttgc ccctgacgat atttttgaaa tcattaataa agcttaccaa atgcacttcc      5760
     ctaccaacgg ccccttcaaa atagtaaggt gcctatcttt tcttcccgaa ctcacagacg      5820
     attctgaaat tacccggacc atagtcgact accatacgaa aaataatcat agaggcatcg      5880
     acgagacctt cctacaccta aagaggaaaa tttttttccc atatatgaag gataaaataa      5940
     ctaagataat tagaacttgt gaaacttgtc taaaactaaa gtacgataga cacccacaga      6000
     aaattccatt tcaaattaca gaaacccccc ttaaacccct cgacatcgtt catattgata      6060
     tttacactat caacaacaac tacaatttga caataataga caagttctct aaatttgcag      6120
     ccgcctaccc aattcctaat agaaactgta ttaacgtggt taaatcttta aaacatttta      6180
     taagccaatt tggcatacca aaaaagctag tttacgatca aggggccgaa ttttctagcg      6240
     acatgtttag caacttctgc tcacaataca atatcgtctt acatgtcaca tcctttcaac      6300
     aatcctctag taactcccct gtagaacgcc ttcactccac atttacagaa atctaccgaa      6360
     taattataga cactaggaaa caactaaaac ttaatacgga acatgacgag acaatgtcag      6420
     aaacactaat tacatacaat agcgcaattc actcagccac agaacatacc ccgttcgaac      6480
     tatttaccgg acgtacccac acatttgaaa acaacactaa attcagcaac gaacatgatt      6540
     acctagttaa actgaacgaa tttaaacaaa aaatatatcc actcatcgca gacaaattat      6600
     cggaaaaggc attacaaaga acacttaaaa ttaatgaaac aaggacaccc cccgctaccc      6660
     tagaacccga aacattggta ctcagaaagg aaaataggag gaataaaata acacctaggt      6720
     tctcattaca caaagtttta cacgaccaag gcccaaccct ggttaccact aggaatcaaa      6780
     aactacacaa atctaaaata cgaagaatta tactaaagaa aaaataaatt ttattgcagg      6840
     ttcaccattc caacaattta tgctatttct atacaacccc tgactaataa tacccctata      6900
     gcaaaaatag aattggggca agcccttatt ataaatagat ataagagagt taggcatgtt      6960
     attaacctgg aagaatttag taaatgtatc gaacaatttc ataaaacact ccagacattt      7020
     aaatatgatg acaccctaat agattcccta gccatactaa aatccaaact aggacaggcc      7080
     caaacaaaac ttaatgcatt aaccccactc aagagaaaca aacgcggatt aattaatgga      7140
     ttaggcagtc tcgtgaaagc tgtcacgggc aatatggatg ccgaagacgc cagagaaata      7200
     ggtaaagaca tcgaaaatat taaaatagcc ctttcgaccg ttaacacaaa ttaccaaact      7260
     caagatgtat tcaataatga aattttaatt agattcgaga acattacaaa tcatattaat      7320
     aatgaacaag ttctaataac aacattcttt gaaaatatgc aaaataaaat ttataaagaa      7380
     gaaaatacct tggaaaaatt acagtatata aataggatta actataactt agaattacta      7440
     cttaatcact tgaacgatat aattgaaagc atgttattag ctaaaataaa tgtaatacct      7500
     agatttatat taaccgaaca agaaatatat aaaattaaaa tgttactgga aaatcaaaat      7560
     attacgataa aaagcgaaca acacatttac gatttgttaa aaatgaacac gttaagctac      7620
     gaaaataaca taatttttac tatccaaata cctatttttg aaaaagataa ttacaaaata      7680
     gccagattaa ttcccttacc aattaataat aaatactttg ttatgattcc taactattta      7740
     atatataaga ataatgttaa taagtactac ttgactcaaa actgccccaa agtagacgac      7800
     acgtttatat gcaacaaaga cgcatacatc aacacaccgc aaaatgacac ctgcactcaa      7860
     caattattgg attccaagaa cagctcctgc gatgtgcaag agagaggccc tgttgcagac      7920
     gtattcgagg cggaaaaagg ctatattttc gcattcaacg ccaataacct gaaggctcag      7980
     ctaaaaaacg gtagcgaaat cactataaat ggctcagcta tcatcaaata cgtgaacgaa      8040
     actatacgca tcaatggcat agagtacgac aacggagttg agacaacctt tgagcactta      8100
     gtcctaatcc taccccccct taaggaaatg accaggaata aaactgtgga aatactgagt      8160
     ttacaaaaca ttcacctaga ggccatagaa acatcaaata agattctgac tatccaccaa      8220
     accgccacac aacacgcttg gaccctttac attctactgg gtttcgtcgc catcctcact      8280
     gttactgcat ggctacatcg acgcacaaaa cacgtattcc acgtacagga tcacaatcac      8340
     cacctgccta tttacgctcc agcaatacct tcgctatggc cgtcgcttca aactggggag      8400
     ggaggagtta ccacagtcac cacaccccct aaacccccac gcctacacca ctgaacacat      8460
     cgacgcccat gggcactccg gtacaacgaa ccgggaaacg aataaacaaa tgggtcaaca      8520
     atgtatctac aatgtatcga catccggcca aatgccgaca ctaacatcag cagaccagac      8580
     ggcaagaatg ccgatgcagc ataagaacct agcataaccc ttatatataa gaactatgta      8640
     cttagatttg gaggcttctt gagaagaacg aaagaaatat agaatcactc ttaagtttga      8700
     acccaaagcg tgaagttgtg ttactgaatc ccatacaagt gcctgaacaa aatctcatgc      8760
     aaagtgccga cagccgacta taagcgaacc acccaacatc tttactgctg ttatattcac      8820
     ctcccatcat tcggcccgaa tggtaact                                         8848
//
ID   Pifo_I      repbase;    DNA;    INV; 8131 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.03, Created)
DT   28-NOV-2021 (Rel. 26.12, Last updated, Version 3)
XX
DE   Internal portion of Pifo retrovirus-like element.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_I.
XX
NM   Pifo_I.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae.
XX
RN   [1]
RP   1-8131
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-8131
RA   Bartolome C., Bello X. and Maside X.;
RT   "Internal portion of Pifo retrovirus-like element.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
RN   [3]
RP   1-8131
RA   Bao W.;
RT   "Consensus updated.";
RL   Direct Submission to Repbase Update (07-DEC-2019).
XX
DR   [3] (Consensus)
XX
CC   Conceptual translation suggests that ORF1 and ORF2 overlap 55
CC   nucleotides. There is a one-nucletide frameshift (+1) between
CC   both
CC   ORF.
CC   Positions [3271-3306] - Retroviral aspartyl protease
CC   Positions [4117-4671] - Reverse transcriptase (RNA-dependent DNA
CC   polymerase)
CC   Positions [5701-6204] - Integrase core domain.
CC   [3]: Consensus updated.
CC   >ENV
CC   MDAEDAREIG
CC   KDIENIKIALSTVNTNYQTQDVFNNEILIRFENITNHINNEQVLITTFFENMQNKIYKEENTLEKLQYIN
CC   RINYNLELLLNHLNDIIESMLLAKINVIPRFILTEQEIYKIKMLLENQNITIKSEQHIYDLLKMNTLSYE
CC   NNIIFTIQIPIFEKDNYKIARLIPLPINNKYFVMIPNYLIYKNNVNKYYLTQNCPKVDDTFICNKDAYIN
CC   TPQNDTCTQQLLDSKNSSCDVQERGPVADVFEAEKGYIFAFNANNLKAQLKNGSEITINGSAIIKYVNET
CC   IRINGIEYDNGVETTFEHLVLILPPLKEMTRNKTVEILSLQNIHLEAIETSNKILTIHQTATQHAWTLYI
CC   LLGFVAILTVTAWLHRRTKHVFHVQDHNHHLPIYAPAIPSLWPSLQTGEGGVTTVTTPPKPPRLHH.
XX
FH   Key           Location/Qualifiers
FT   CDS           1971..3050
FT                 /product="GAG"
FT                 /note="Conceptual translation, with homology to GAG
FT                 protein."
FT                 /translation="MSKKLTQNIKKTAQSVLGVPTPVSRTIRPNTRSSGLP
FT                 IVPEIIDHPLTPNMMDSGNASNNSAHSVRPGPPSLTPTVSGISSLSTTFKP
FT                 KDIMAFVEHLPTFDGTPRYLDRFITSVEEILMLIRGADHTPYGLLTLRTIR
FT                 NKIVDRADEALELANTPLVWDEIKGNLIRLYSSKKSEASLLSEMSSFSDRQ
FT                 SLGQLFFGLSKIKSQLFSILKNTELNHNIVEAKRTVYNEVCLNAFITGLRE
FT                 PLKTFIRLKAPQTIEQAYEQCQIEQSLYRTNNRGPNETFTKNRRDNQNTRD
FT                 RRHDGRTNNDRNAPYPNNNYNQQPNSRETNQSSTANPFRTQSGRLNNIEDD
FT                 TPDTNFQQAASVTHQGT"
FT   CDS           2999..6550
FT                 /product="POL"
FT                 /note="Conceptual translation, with homology to POL
FT                 protein."
FT                 /translation="HTRHKFSTGSLRNPSGYISPATHESSLPFIEINLPFS
FT                 PHLKFLIDTGSTHSFIDPKHIESKDCVGLEKPLTLKTALNTFVLQKKFVIP
FT                 FPSEFKTQGKMNLLPFRFHSFFDGLLGMDSLSFLKAKIDILNSQLKTSNTI
FT                 LPIINYTNQTSNVFCITAHTKTTIPLPVQNDQGDFLYDTTYINKDLIISGG
FT                 LYKSNNHLTTFEVANYRDSDQLLYLESPLKGIPYVKADFVELNNISSDPPK
FT                 LPDLVNPLDNLKMEHLNPEEKQNLITLCKEFSDIFFNETVKLSFTNKITHS
FT                 IPTTDKAPPRAPRGATPIHVRSYRYPYIHKEEVKKQINSMLNQDIIRSSYS
FT                 PWSAPVWVVPKKAGPNGEQKWRLVIDYRKLNDKTISDRYPIPNINDILDRI
FT                 GKAKYFTTLDLASGFHQIEMNPDDIAKTAFTVEGGHYEFIRMPFGLKNAPA
FT                 TFQRVMDSILGDVIGLNCLVYLDDIIVFSASLQEHVIHLTSIFQKLRDANF
FT                 KVQLNKSDFLRKETEFLGHIVTQEGIKPNPDKIAAIKNFPCPKNKKEIKSF
FT                 LGLLGYYRKFIKDFAKITKPLTKQLKGNNKTITIDDEFTKTVDFCKILLTN
FT                 DPILQYPDFTKPFILTTDASNFALGAVLSQGTLQNDKPVCFASRTLSDTEV
FT                 NYSTIEKEMLAIIWAVQYYRPYLFGTKFTIVTDHKPLTWLMNFKQPNSKVI
FT                 RWRLQLLEYDFEVVYKNGSQNVIADALSRSNANLNHNEIVPNSPYECPVSD
FT                 KPLNDFNIQLVIKLSQDTGYNTSTPSKHKLRREYYRPLFQLEDIISVLKQS
FT                 LKPNKLCAIFAPDDIFEIINKAYQMHFPTNGPFKIVRCLSFLPELTDDSEI
FT                 TRTIVDYHTKNNHRGIDETFLHLKRKIFFPYMKDKITKIIRTCETCLKLKY
FT                 DRHPQKIPFQITETPLKPLDIVHIDIYTINNNYNLTIIDKFSKFAAAYPIP
FT                 NRNCINVVKSLKHFISQFGIPKKLVYDQGAEFSSDMFSNFCSQYNIVLHVT
FT                 SFQQSSSNSPVERLHSTFTEIYRIIIDTRKQLKLNTEHDETMSETLITYNS
FT                 AIHSATEHTPFELFTGRTHTFENNTKFSNEHDYLVKLNEFKQKIYPLIADK
FT                 LSEKALQRTLKINETRTPPATLEPETLVLRKENRRNKITPRFSLHKVLHDQ
FT                 GPTLVTTRNQKLHKSKIRRIILKKK"
FT   CDS           6543..8129
FT                 /product="ENV"
FT                 /note="Conceptual translation, with homology to ENV
FT                 protein. ORF extends 202 residues into LTR."
FT                 /translation="RKNKFYCRFTIPTIYAISIQPLTNNTPIAKIELGQAL
FT                 IINRYKRVSHVINLEEFSKCIEQFHKTLQTFKYDDTLIDSLAILKSKLGQA
FT                 QTKLNALTPLKRNKRGLINGLGSLVKAVTGNMDAEDAREIGKDIENIKIAL
FT                 STVNTNYQTQDVFNNEILIRFENITNHINNEQVLITTFFENMQNKIYKEEN
FT                 TLEKLQYINRINYNLELLLNHLNDIIESMLLAKINVIPRFILTEQEIYKIK
FT                 MLLENQNITIKSEQHIYDLLKMNTLSYENNIIFTIQIPIFEKDNYKIARLI
FT                 PLPINNKYFVMIPNYLIYKNNVNKYYLTQNCPKVDDTFICNKDAYINTPQN
FT                 DTCTQQLLDSKNSSCDVQERGPVADVFEAEKGYIFAFNANNLKAQLKNGSE
FT                 ITINGSAIIKYVNETIRINGIEYDNGVETTFEHLVLILPPLKEMTRNKTVE
FT                 ILSLQNIHLEAIETSNKILTIHQTATQHAWTLYILLGFVAILTVTAWLHRR
FT                 TKHVFHVQDHNHHLPIYAPAIPSLWPSLQTGEG"
XX
SQ   Sequence 8131 BP; 2997 A; 1820 C; 1222 G; 2092 T; 0 other;
     ggcgcagccg gtaggatgct ttcctacatc tatacattaa cttacctgta agtaaagaaa        60
     aatgtaaaaa acaaagcata agtgatagct caataagtaa agaatcttaa ataaaaaggg       120
     aaaatatatt ctgctacagt gacaacaaaa tgtaaacagt gagttgtgag ctgcacacgg       180
     tgacgtataa gtgcttgggt aaaattaaaa agaaaaatat ttaaacatag ccaacagaca       240
     acccaagtaa tatgcgcgaa attgtttgca gcgaacaacg cattgggtca gcaaaataaa       300
     aaaaagaaag aatttttttt atcgcataac atgttacaac acaaattttt tttacttttc       360
     tgctattgtg acgacaaaat ataaacagtg aattgtgagc tgcacatgat gacgcataag       420
     taaagtttaa aagaaaaatt attaaagcat agccaacaaa caaaccgagt aatgtgcgct       480
     aaattgtgtg tagcaaacaa cgcattgggt cagcaaaata agtaaaaaat agccacggta       540
     taacaaattt aatagtctct acctaaaatt ccacggccta gggtatcccc tacgatggca       600
     aatagaatat caaacataac catatattac ttaataaact atcttgcaat tatgtcacaa       660
     ctcacattaa atcactgcaa atcaaatact ctatgatatg ggtcttatgc tatacggctc       720
     acgaaacaag cgtgtttcgt gccgctgtgg cataccatcc atgcatacat atatatatac       780
     ctaaatacac aatatgcaca caagcttgca accaacgtat atacacacat atacaccaaa       840
     ttacgcacac aagcctgcga accgatactc tatgatatgg gtctatgcta tacggctcag       900
     ggtacaagct tgtgccttga tgctgtggca tatcacgcat atacgcatag atatccaacg       960
     tatatacaca tatatacacc aaattacgca cacaagcctg cgaaccgata ctctatgata      1020
     tgggtctatg ctatacggct cagggtacaa gcttgtgcct tgatgctgtg gcatatcacg      1080
     catatacgca tagatatcca acgtatatac acatatatac aataaatcac gcacacaagc      1140
     ttgcgaaccg atactctgtg atatgggtcc tatgctatac ggctcacgat acaagcttgt      1200
     gtcatgacgc agtggcatac cacgcatata cacatagata ttcaacgtat atacacatat      1260
     atacaataaa tcacgcacac aagcttgcga accgatactc tgtgatatgg gtcctatgct      1320
     atacggctca cgatacaagc ttgtgtcatg acgcagtggc ataccacgca tatacacata      1380
     gatattcaaa cacagtatat gtacacatgc tacaaccaat aaatacgctt atacatataa      1440
     ccataaaatt actgcaatac gaaaaaacaa tgagacactt taccccaacc taccctaaca      1500
     attaaagttt atacgcttcc actcgagtac cgaatggcta atgtaacaca ataccaatag      1560
     tcacgccgtc agcataaaca aacaatttac actcttgcac accaaataca atatgtgtta      1620
     tgcgattata cttgtacata tatatacgaa tacgtatatg catagtgagt ggccaagcct      1680
     atcgagtcaa aattctttct tttttataat cgtcgacatt cacttatgct atgttccgaa      1740
     tactataaac tatgtataca acaattttat aataccaact atattacaga tattgaatca      1800
     cataaaaacc atacaaaacc tatatacatt aagaaattta tacgcacaaa tacaatacaa      1860
     tacatactta tacacactta taaaaaattc cacattatat taaaacttgt tcattatttt      1920
     ctttaatata aattccacat cagaaacaaa atttttttta attaggttaa atgtccaaga      1980
     aattaactca gaatatcaag aagaccgcac agtctgtatt aggagtcccc accccagtta      2040
     gcagaactat acgccccaat acccgttctt ctgggttgcc tattgtccct gaaataattg      2100
     atcaccctct taccccgaac atgatggatt caggcaatgc ttccaataat tcagctcatt      2160
     ccgttcgccc tggaccaccc tctttaacgc ccaccgttag tggaataagc tccctgtcaa      2220
     ccacatttaa acctaaagat atcatggctt ttgtcgaaca tttaccaacg tttgacggaa      2280
     cccccagata tttagacagg ttcattacaa gcgtagaaga aattctcatg ttaatcagag      2340
     gggcagatca cacgccatat ggtttgctca ctttgaggac aatcaggaac aaaatagtag      2400
     acagagccga cgaagcgtta gaactagcga atacaccgtt agtttgggac gaaatcaaag      2460
     gcaatctcat taggctctac tctagtaaga agagcgaggc tagtttgctg agtgaaatga      2520
     gttcattttc agaccgccaa agtttgggac aattattctt tgggctttca aaaatcaaaa      2580
     gccaattgtt ctccatactc aaaaacactg aacttaacca taacatagtt gaggcaaaaa      2640
     gaacagtgta taatgaggtc tgcctcaatg cattcatcac cggacttagg gagccgctca      2700
     agacattcat tcgtttgaag gcccctcaga caatagaaca agcttacgaa caatgccaaa      2760
     ttgagcagtc cttatacaga actaacaatc gcggacccaa cgaaacgttc actaaaaata      2820
     gacgtgataa tcaaaacacc cgagaccgac gtcacgacgg acgaactaat aacgatcgta      2880
     atgcaccata cccaaataat aactacaatc aacaacccaa ctctagggaa accaatcaat      2940
     ccagtacagc aaaccctttt aggactcagt ctggtcgcct caataatata gaggatgaca      3000
     cacccgacac aaattttcaa caggcagcct ccgtaaccca tcagggtaca taagtccagc      3060
     aacccacgag tcctcactcc ccttcattga gataaatctc ccctttagtc cccatttaaa      3120
     attcctaata gataccggtt ctacgcattc tttcattgat cctaagcata tagaatcaaa      3180
     agattgcgtg ggcctagaaa aacctttaac gctcaaaaca gccctaaata cctttgtact      3240
     tcaaaaaaaa tttgtcattc cttttccatc tgagtttaag acccagggga aaatgaatct      3300
     attgccgttt agattccact ccttttttga tggattattg ggcatggact cactttcatt      3360
     tttaaaggca aaaatagata tattaaattc acaattaaag acatctaaca caattttgcc      3420
     tataattaac tataccaacc agacctccaa cgtgttttgc attacagccc atactaaaac      3480
     cacaataccc ttgccggtac aaaatgatca aggggatttt ctctatgaca cgacttatat      3540
     taataaagac cttatcatat cagggggcct ttacaaatca aataaccact taacaacctt      3600
     cgaagtggcc aactacagag attctgacca actcctatat ctcgaaagcc ctcttaaagg      3660
     cataccatat gtcaaagctg actttgtaga gcttaataac atatcttctg acccacccaa      3720
     gctaccagac ttagtaaacc ccttagataa cttaaaaatg gagcacctca acccggaaga      3780
     gaaacaaaac ctaatcacat tatgtaaaga attctcagac atttttttta acgaaacagt      3840
     aaaactctca tttacaaata aaattacgca ttctatccct accacggaca aggccccccc      3900
     ccgggcgccc cgcggcgcta ccccgattca cgtaaggtcc tatagatatc cgtacattca      3960
     caaagaggaa gtaaagaaac aaattaattc tatgctaaac caagatataa tcagatctag      4020
     ttactcgccc tggagtgctc cggtttgggt agtccccaag aaagccgggc ccaatgggga      4080
     acaaaaatgg agattggtta tagattatcg aaaactcaat gataaaacca tctccgatag      4140
     gtacccaata ccaaacataa atgatatact agatcgcata gggaaagcca aatactttac      4200
     caccctcgat ttggcaagtg ggtttcatca aattgagatg aacccagacg acattgccaa      4260
     aacggccttt acagtagaag gagggcatta tgaatttata agaatgcctt tcggcttaaa      4320
     aaatgctccc gctactttcc aaagagtaat ggacagcatt ttaggtgacg taataggcct      4380
     caattgtctg gtatacttgg acgatataat cgttttttct gcttccctcc aagaacatgt      4440
     aatacattta acttcaatat ttcaaaaact tagagatgca aactttaaag tacaattaaa      4500
     taagtccgat tttcttagga aagaaaccga attcctcgga cacatcgtca cccaagaagg      4560
     aatcaaacca aatccagaca aaatagcggc tataaagaat ttcccttgtc ctaagaataa      4620
     gaaagaaatt aaatctttct tggggttatt agggtactat aggaaattta taaaagactt      4680
     cgcaaaaatt actaagcctt taactaaaca actaaaaggt aacaacaaga ctatcaccat      4740
     agacgacgaa ttcacaaaga cggtcgattt ctgtaaaatt ttacttacca atgaccccat      4800
     actccaatac cctgacttta caaaaccttt tattttaacg acagacgcaa gtaatttcgc      4860
     attgggagct gtcctttcac aaggcactct acaaaatgat aagccagtct gtttcgctag      4920
     ccgaactctc tcagacacag aagtaaacta ctcgacaatc gaaaaagaaa tgttagctat      4980
     tatttgggct gtccaatact atagacccta cctcttcgga acaaaattca ccatagtaac      5040
     agaccacaaa cctctaacat ggcttatgaa cttcaaacag cctaattcca aagtaattcg      5100
     ttggagactc caactcttag aatatgactt tgaggttgtc tataaaaatg gctcacaaaa      5160
     cgtcattgcc gacgcgctta gccgctcgaa cgctaatctc aatcacaacg agatagtccc      5220
     aaattcaccg tacgaatgcc ctgtatcaga caaaccactc aacgatttca atattcagtt      5280
     ggtcataaag ttaagccaag atacaggtta caatacctca actccttcta aacacaaact      5340
     gcgacgagaa tactatagac ctctttttca actcgaagac attataagtg tcttaaaaca      5400
     atccctcaaa cctaacaaat tgtgtgctat atttgcccct gacgatattt ttgaaatcat      5460
     taataaagct taccaaatgc acttccctac caacggcccc ttcaaaatag taaggtgcct      5520
     atcttttctt cccgaactca cagacgattc tgaaattacc cggaccatag tcgactacca      5580
     tacgaaaaat aatcatagag gcatcgacga gaccttccta cacctaaaga ggaaaatttt      5640
     tttcccatat atgaaggata aaataactaa gataattaga acttgtgaaa cttgtctaaa      5700
     actaaagtac gatagacacc cacagaaaat tccatttcaa attacagaaa ccccccttaa      5760
     acccctcgac atcgttcata ttgatattta cactatcaac aacaactaca atttgacaat      5820
     aatagacaag ttctctaaat ttgcagccgc ctacccaatt cctaatagaa actgtattaa      5880
     cgtggttaaa tctttgaaac attttataag ccaatttggc ataccaaaaa agctagttta      5940
     cgatcaaggg gccgaatttt ctagcgacat gtttagcaac ttctgctcac aatacaatat      6000
     cgtcttacat gtcacatcct ttcaacaatc ctctagtaac tcccctgtag aacgccttca      6060
     ctccacattt acagaaatct accgaataat tatagacact aggaaacaac taaaacttaa      6120
     tacggaacat gacgagacaa tgtcagaaac actaattaca tacaatagcg caattcactc      6180
     agccacagaa cataccccgt tcgaactatt taccggacgt acccacacat ttgaaaacaa      6240
     cactaaattc agcaacgaac atgattacct agttaaactg aacgaattta aacaaaaaat      6300
     atatccactc atcgcagaca aattatcgga aaaggcatta caaagaacac ttaaaattaa      6360
     tgaaacaagg acaccccccg ctaccctaga acccgaaaca ttggtactca gaaaggaaaa      6420
     taggaggaat aaaataacac ctaggttctc attacacaaa gttttacacg accaaggccc      6480
     aaccctggtt accactagga atcaaaaact acacaaatct aaaatacgaa gaattatact      6540
     aaagaaaaaa taaattttat tgcaggttca ccattccaac aatttatgct atttctatac      6600
     aacccctgac taataatacc cctatagcaa aaatagaatt ggggcaagcc cttattataa      6660
     atagatataa gagagttagc catgttatta acctggaaga atttagtaaa tgtatcgaac      6720
     aatttcataa aacactccag acatttaaat atgatgacac cctaatagat tccctagcca      6780
     tactaaaatc caaactagga caggcccaaa caaaacttaa tgcattaacc ccactcaaga      6840
     gaaacaaacg cggattaatt aatggattag gcagtctcgt gaaagctgtc acgggcaata      6900
     tggatgccga agacgccaga gaaataggta aagacatcga aaatattaaa atagcccttt      6960
     cgaccgttaa cacaaattac caaactcaag atgtattcaa taatgaaatt ttaattagat      7020
     tcgagaacat tacaaatcat attaataatg aacaagttct aataacaaca ttctttgaaa      7080
     atatgcaaaa taaaatttat aaagaagaaa ataccttgga aaaattacag tatataaata      7140
     ggattaacta taacttagaa ttactactta atcacttgaa cgatataatt gaaagcatgt      7200
     tattagctaa aataaatgta atacctagat ttatattaac cgaacaagaa atatataaaa      7260
     ttaaaatgtt actggaaaat caaaatatta cgataaaaag cgaacaacac atttacgatt      7320
     tgttaaaaat gaacacgtta agctacgaaa ataacataat ttttactatc caaataccta      7380
     tttttgaaaa agataattac aaaatagcca gattaattcc cttaccaatt aataataaat      7440
     actttgttat gattcctaac tatttaatat ataagaataa tgttaataag tactacttga      7500
     ctcaaaactg ccccaaagta gacgacacgt ttatatgcaa caaagacgca tacatcaaca      7560
     caccgcaaaa tgacacctgc actcaacaat tattggattc caagaacagc tcctgcgatg      7620
     tgcaagagag aggccctgtt gcagacgtat tcgaggcgga aaaaggctat attttcgcat      7680
     tcaacgccaa taacctgaag gctcagctaa aaaacggtag cgaaatcact ataaatggct      7740
     cagctatcat caaatacgtg aacgaaacta tacgcatcaa tggcatagag tacgacaacg      7800
     gagttgagac aacctttgag cacttagtcc taatcctacc cccccttaag gaaatgacca      7860
     ggaataaaac tgtggaaata ctgagtttac aaaacattca cctagaggcc atagaaacat      7920
     caaataagat tctgactatc caccaaaccg ccacacaaca cgcttggacc ctttacattc      7980
     tactgggttt cgtcgccatc ctcactgtta ctgcatggct gcatcgacgc acaaaacacg      8040
     tattccacgt acaggatcac aatcaccacc tgcctattta cgctccagca ataccttcgc      8100
     tatggccgtc gcttcaaact ggggagggag g                                     8131
//
ID   Pifo_LTR    repbase;    DNA;    INV; 444 BP.
XX
AC   .
XX
DT   05-JAN-2009 (Rel. 14.03, Created)
DT   05-JAN-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   Pifo_LTR is a long terminal repeat from Pifo.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Pifo_LTR.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-444
RA   Bartolome C., Bello X. and Maside X.;
RT   "Widespread evidence for horizontal transfer of transposable
RT   elements across Drosophila genomes.";
RL   Genome Biol 10(2), R22-R22 (2009).
XX
RN   [2]
RP   1-444
RA   Bartolome C., Bello X. and Maside X.;
RT   "Pifo_LTR is a long terminal repeat from Pifo.";
RL   Direct Submission to Repbase Update (05-JAN-2009).
XX
DR   [2] (Consensus)
XX
CC   TSD is 4-bp long.
XX
SQ   Sequence 444 BP; 153 A; 122 C; 77 G; 92 T; 0 other;
     agttaccaca gtcaccacac cccctaaacc cccacgccta caccactgaa cacatcgacg        60
     cccatgggca ctccggtaca acgaaccggg aaacgaataa acaaatgggt caacaatgta       120
     tctacaatgt atcgacatcc ggccaaaatg ctgacactaa catcagcaga ccagacggca       180
     agaatgccga tgcagcataa gaacctagca taacccttat atataagaac tatgtactta       240
     gatttgtagg cttcttgaga agaacgaaag aaatatagaa tcactcttaa gtttgaaccc       300
     aaagcgtgaa gttgtgttac tgaatcccat acaagtgcct gaacaaaatc tcatgcaaag       360
     tgccgacagc cgactataag cgaaccaccc aacatcttta ctgctgttat attcacctcc       420
     catcattcgg cccgaatggt aact                                              444
//
ID   piggyBac-10_LMi repbase;    DNA;    INV; 2403 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2403
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3340-3340 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(795..1109,1084..1593,1398..1859,1816..2127)
FT                 /product="piggyBac-10_LMi_1p"
FT                 /translation="MMNDNIQSIVVEMTNIEGQRVYGDGWEALDKITLQAY
FT                 IGLLLLAGVYKSYGESTKSLWDPETGRAIFPAVMSLKRFCCISRVLRFDDK
FT                 SDRRARRVNDTYKSSVGMTPIRVLWDKWVEMLSKLYNPGTNVTVDEQLVAF
FT                 RGRCPFKQYIPSKPSKYGVKIWTLCDSATSYVLKTQIYTGKLPGQSPEKNQ
FT                 GMRVVMDLTYELKGQNVTCDNFFTSYALGQGLLKRHLTMLGTVRKISLNSL
FT                 IIYQAKKMFTLQSSFLLRTPPSCLMFQGRTNRLSQLLHVICIRPRTSQKTS
FT                 YNVGHSEKNKPELPNNISSKEDVHTSKFFFTKDTTIVSYVPRKNKQVVLMS
FT                 TMHNSVEISNREDKKPKMILDYNASKGAVDTLDQLIGTYTCKRKTNRWPMI
FT                 IFYNIIDTSAYNAFVLWREINPGWKKCSLQKKNISIQDGKNVLYKRRIFLD
FT                 ELGRLLVSPYIVARKMQPRNEQSAAIVRKIQTGNPSTPSFIGGNRNCKRSR
FT                 CKFCPSSCDNKTPMKCSNCNKHVCKTHVRYLCPNCEK"
XX
SQ   Sequence 2403 BP; 802 A; 435 C; 459 G; 707 T; 0 other;
     ccctgctgtt atcttcgggt cattatgacc cgaaaaggaa tttgttcttt catagctttt        60
     taatatttaa atattatttc ttcaaacttg aagactttgt ttttcgagac attataaata       120
     cttcaaatat caaattaaaa tcaatacttt tctccccctt cctaaaactt aatttgttac       180
     agttgtgttc ttcgggtcaa tatgacccgg ggcaattaaa aattcacaga acgtacagat       240
     atcatagtca agttttattt cgtcatgtgt gaagtataca cacgggtttc atgacaaagt       300
     aaactctgat tctttattgt tgaaatgtgt gaaggctact caacaatcga agtcgctgat       360
     tgcgttcaaa ttattgtacc acattatcgc tcacagttac atttttcatc tgttgtgtgc       420
     agacgcagct cctatatcta tcgtagtaac gtttgtggag ctattatgac gaaagagttc       480
     tttccgatga gcaattggaa gctttagtaa atgcatctga cagtgaggat acaatttctg       540
     aagatgaaaa tcacaccagt gatgacaaca ttcatccttc atctgaatca gaagacattt       600
     cagatgccga catatcaaat gacaatgtac atgctgttca attcattcag tctaaagaca       660
     aaaagatcac atggagctta caaccttttc cgcaaactgg aagagcatct agtgcaaaca       720
     ttataaacgt gactcctggt ccgacaagat acgctatcgc cagagtaagt gacataaaat       780
     catcttttct tgttatgatg aatgataata ttcagagtat tgtggtggaa atgactaata       840
     ttgagggtca aagagtttat ggagatggct gggaagcatt agataaaatt acacttcagg       900
     cctatattgg cctgttatta ctggctggtg tgtacaaatc atatggtgaa tcaacaaaga       960
     gtctgtggga tccagaaacg ggaagagcca tttttcctgc cgtaatgtcg ctgaaacggt      1020
     tctgttgcat ttcacgtgtc ttacgtttcg atgacaagtc tgatcgaaga gcacgaagag      1080
     taaatgacac ctataagagt tctgtgggat aagtgggtgg aaatgctttc aaaactatat      1140
     aatcctggca caaatgtaac tgtggatgag caacttgtgg ctttccgagg acgttgtcca      1200
     ttcaaacaat atataccgag caaaccgtca aaatatgggg taaagatatg gacattgtgt      1260
     gatagtgcca cttcttatgt tttgaagaca caaatctata caggaaaatt acctggacaa      1320
     tcacctgaga aaaatcaagg tatgagggtt gtcatggatc tgacttatga gctaaaagga      1380
     caaaatgtca catgtgacaa cttcttcacg tcatatgcat taggccaagg acttctcaaa      1440
     agacatctta caatgttggg cacagtgaga aaaataagcc tgaactccct aataatatat      1500
     caagcaaaga agatgttcac acttcaaagt tcttttttac taaggacacc accatcgtgt      1560
     cttatgttcc aaggaagaac aaacaggttg tcttgatgag cacaatgcac aacagtgtgg      1620
     aaataagcaa cagagaagac aagaaaccaa aaatgatatt agactacaat gcaagtaagg      1680
     gagctgttga tacattggat cagcttattg gcacatatac atgcaagagg aaaaccaacc      1740
     gatggccaat gatcatcttc tacaatatta ttgatacttc tgcctacaat gcttttgtgc      1800
     tatggagaga aataaatcca ggatggaaaa aatgttcttt acaaaagaag aatatttctt      1860
     gatgaattgg gaagactcct agtttctcct tacattgtag ctagaaaaat gcagccacga      1920
     aatgaacagt cagcggcaat tgttagaaaa atacaaacgg gaaatccatc aacaccaagc      1980
     ttcatcggtg gcaaccgaaa ttgcaaacgt tccagatgca aattctgtcc gtcgagttgc      2040
     gacaacaaga ccccaatgaa gtgttcaaat tgtaacaaac atgtttgtaa aacacatgtt      2100
     agatacctct gcccaaattg tgaaaagtaa aactctattc taattttcct tgtgattgtg      2160
     cttgtgatta tacgccaagt aaaactgttg tgcaacagat cattgagggc gagaacttac      2220
     ttcattgttg atattgttgg catttaatag tgtaaaattt atgaatattg taacaaataa      2280
     acctacattc ataattataa taattttaac ggtttatttt cattataccc ttcaaatacc      2340
     acaccgggtc attatgaccc gaaagaccat atgtgtatac cttttttgag gaacacagca      2400
     ggg                                                                    2403
//
ID   piggyBac-11N1_LMi repbase;    DNA;    INV; 948 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-11N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-948
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3341-3341 (2014).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 948 BP; 290 A; 170 C; 183 G; 305 T; 0 other;
     cccttaacta ctatcgaccg tctctcagac cgctacgaat ttttgtgtcg aaatatttca        60
     gacgcccctg caaagagaaa ttgagtcttc cgtgtacctt cctactgtct gacaagctac       120
     acgtgccagc attcttgcat tgttgctgct ctttgtttcg tatttattag ccctgagagg       180
     tctcacagac ctaccatagt gttagcgtct catgctttta ctaaacgtta ctgtttcttt       240
     atggcagcga aagctgaacc ttctatgcaa cgtgttttat gcgagacaga tgtggatgtc       300
     caagaacgct ttggtgaatc ctcagataaa gaatttgatg acagcgataa tggccctgat       360
     tttgagatat ttagtgatca tgatactaat tcagagcgtg aagtgtatgc aggttcaaac       420
     agactaaaat atgattctgc ggtcatagag gacataatta ctttttactt gatattgcag       480
     aagtaaaatt tgacaaagtt tatcccttca ctgacttacg gaatgtagta gtcgctctac       540
     attgaaaaaa tgaatcgtaa actgaaagct gactttgcgt acaatttatc ggaagtgaaa       600
     tgggattttt ccatctaatt atgtttcgaa tctgtaatat aatctctctg atgataatct       660
     gtgggtgagt agagagctaa ctagttgatg ttattttcgt aacacataaa ataaaaatat       720
     acagcacatt gcgcagtgtt ttatttgtcg ccattttata aatactgtgt tgttaaaaaa       780
     aagtcaagtt tcaatatagt ctacttccaa gaagtgtaat gaacaacagg aagtcatgaa       840
     aatatacatt ccgcaaacca ctggtttgat atataagaaa taaaaatgag gtctgagaga       900
     cccctccata gtaattgtgt tcctgtcaat gtccatagta gttaaggg                    948
//
ID   piggyBac-11_LMi repbase;    DNA;    INV; 2569 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2569
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3342-3342 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..2087
FT                 /product="piggyBac-11_LMi_1p"
FT                 /translation="MAGKAERSMQRILREADVDDQERFGESSDDFDDSDND
FT                 PDFEVFSEHDTNSEQEPESDEDVTPDDDEAAYFFGKNRCFRWRKKQPAANV
FT                 RTRQHNIVLQHPGLRQTAQSLGENPSALEVWNLFFTQDILDEIVLWTKLKI
FT                 SQLRAQYANDRLSYLQDVDVIELKALIGLLVYSAVFKSGHESVYSLFATDG
FT                 TGRDIFRCTVSKERFLFLLYSLRFDNPDDREKRKEIDKAAAVSQIFLRIIE
FT                 NSQLCYSVGTTVCVDEMLVPFRGRCGFRMYMPNKPARYGVKIQCLTDVSTS
FT                 YLYNAYIYSGKGSDGHTLSNHEKSHSVPTQAVLRLVKPIENTGRNVTGDNW
FT                 YSSIELVNELSKKGLTYVGTLKRNKKEIPPQFLPNRKRRVKTSVYGFTEDM
FT                 TLVSFVPKKAKAAILVSSLHHSENNDPVSGKPEIIQFYNTTKGGVDCLDQR
FT                 CAGYSSSRRTRRWPLAIFYTLVDVACGVNSYVVHQAYPKAEVMTRMSFMKT
FT                 LARDLVEPHMKRRLSIGHLPREVSGTIRRLLNIHDEPHTPKQFENRRTCAF
FT                 CPPHLKRKTRYPCQQCGVPICLGCSRKVCVKCMRGQSD"
XX
SQ   Sequence 2569 BP; 761 A; 505 C; 582 G; 721 T; 0 other;
     cccttaacta ctatctgcgg tctctcagac cgctacgact ttttgagtcg agatatttca        60
     cacacccctg ccaagctaaa aggactcttc cgtgtacctt cctggtggcc gacaaggtcc       120
     acgtgccagc attcttgcag tgttgctgct ctttgttccg tatttatgag ccttgcgcgg       180
     cctcactgac cgaccatagt gtttgcgtgc cgctggcgca ggctctgcct cgtagcgcct       240
     ggccagtcgg cttcgtgagc gcggcctgct aagcgacagc gctgtggctg tggcctctct       300
     ctcgctgttg ttgttccgtg tcgtgtttct ccatggcagg aaaagctgaa cgttctatgc       360
     aacgcatttt acgtgaagca gatgtggatg atcaagaacg tttcggtgaa tcctccgatg       420
     attttgacga cagcgataat gaccctgatt ttgaggtatt tagtgaacat gacactaatt       480
     cagagcagga acctgaaagt gatgaagatg tgacacctga tgatgacgaa gcagcttact       540
     tcttcggtaa gaacagatgt tttcgatggc gaaaaaagca gccagcagcc aacgtaagaa       600
     caaggcaaca caacatcgtc ttacagcatc ctggactgcg acagacggct caaagtcttg       660
     gagaaaaccc ttctgctttg gaggtatgga atctgttctt tacacaagat attctagacg       720
     aaatcgttct atggacaaaa ctgaaaatat cgcagcttag agcacagtat gcgaatgatc       780
     gcttgtccta tctacaagat gttgacgtca ttgaattgaa ggcactaatt ggcctgttag       840
     tgtattcagc ggttttcaaa tcggggcacg aatcggttta cagcctgttt gcaaccgatg       900
     gaacaggcag agatattttc agatgcactg ttagtaagga aagatttctg tttttactgt       960
     attcattacg atttgacaac ccagatgatc gggagaaaag aaaggaaata gacaaggcag      1020
     cagcagtttc acaaatcttt ctgcgtataa tcgaaaacag tcaactttgc tattctgtag      1080
     gtacaacagt atgtgtcgat gaaatgcttg tacctttccg tggaaggtgt gggtttagaa      1140
     tgtatatgcc aaacaaaccg gcaagatatg gcgtgaaaat tcagtgtttg accgacgtta      1200
     gtacaagtta cttgtataat gcatacattt attctggaaa aggtagcgat ggtcacaccc      1260
     tttcaaacca tgagaaaagt cacagtgttc ccacacaggc tgttcttcgt ctggtgaaac      1320
     ctattgaaaa cactggaaga aatgttacag gtgacaactg gtactcatct atagaactag      1380
     tcaatgaact ttcaaaaaaa ggtctcacat acgttggtac actgaaaaga aacaaaaagg      1440
     agattccacc gcaattccta cccaatagga aacgtcgagt gaagacatct gtttatggtt      1500
     ttacagaaga catgactctg gtttcctttg tgcccaaaaa ggccaaagct gcaatactgg      1560
     tctcttctct gcatcattca gaaaataatg atcctgtatc aggaaaaccc gagatcatcc      1620
     agttttataa tacaacaaaa ggaggtgtgg actgcctcga ccaaagatgt gcaggttatt      1680
     cttcaagtcg gcggacaaga agatggcctt tggcaatttt ctacacttta gtggatgttg      1740
     cgtgtggtgt aaattcttat gtggtacatc aagcgtatcc aaaggcagaa gtaatgacaa      1800
     gaatgagctt catgaagacc ctagcaagag atctagttga gcctcatatg aagcgtagac      1860
     tttctattgg acacttgcca cgagaggtga gtggcaccat tagaagatta ctgaatatac      1920
     atgatgagcc tcatacacca aaacagtttg aaaatcgaag aacgtgtgcc ttttgtcctc      1980
     ctcatctgaa gaggaaaaca cgatatccgt gtcaacagtg tggtgttcca atttgtttgg      2040
     ggtgttctag aaaggtctgc gtgaagtgta tgcggggtca aagcgactaa aagagtattt      2100
     agtggcacac agaaggatat ctttagtttg tactttttgt tttataagga aaatgtggca      2160
     acctttctgg gagaatcgta aatggaaagg agatttcgca tacaatttac tataattcaa      2220
     atgggatttt tgtatctaat cacgctgtga atttgtaata taatctctat aatgataatc      2280
     tgtgggtgtg tagagaaata attacttgct gttcttttcg tagcacaaaa aataaaaatg      2340
     tactgcaaat tgcgctgtgt tttacttgtc gtcatgttac tcatactaca ttgttaaaaa      2400
     aaagtcaaat ttctactaat gccacctcta agaagtgtaa tgaacgacag gaagtcatga      2460
     aaatatatat ttagcaaaac actagtttaa tatatggaaa ataagagagc ggtctgagag      2520
     acccctccat agtagttgcg ttcctgtcaa cgtctatagt agttaaggg                  2569
//
ID   piggyBac-12N1_LMi repbase;    DNA;    INV; 617 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-12N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-617
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3343-3343 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 617 BP; 189 A; 120 C; 122 G; 186 T; 0 other;
     cacgttcgct gccgttcacg ctctggcgcg tgtaaacgtt acttgagtca ggtgccgctc        60
     acgctgtggc gcgtgctgcg acctagcatc ctattatggg ttgttgtaaa ctggcatcgt       120
     ctaataaagc tgtatactct ggtaggcact cagggaagag tataagtgat atgcacacgt       180
     acgtggttcc agatttccgc gtttgcatta ccggctacga gccacacacg cttctcatga       240
     tgtcatgata gatttattgg attcttatgt aaacaagcaa gcaagctttt gattatttta       300
     attttatttc gattagttac cagtttataa aaaaaatact tcttagtttt gatattattc       360
     atacttatat tgctgatgat atagaaataa gcatatgttt tatgaaatac cttgtatgta       420
     ctgtttatat tgttcatttg ttgttttcac aaaaatacaa atgcaaataa aaaaccatat       480
     caaaaaaact gaaaactaaa accaaaacat tcagtggctc aaaactatga aaagatactg       540
     tcaaaatacg atcacgcgcc agagcgtgaa gtggcaccta gcatcatcgc gccagagcgt       600
     gaacggcagc gaacgtg                                                      617
//
ID   piggyBac-12_LMi repbase;    DNA;    INV; 2704 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2704
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3344-3344 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           539..2281
FT                 /product="piggyBac-12_LMi_1p"
FT                 /translation="MTNKDEPLPGPSGMSGSRKRKWWEDKKKLTDEELEKI
FT                 LQESESDIEPLDSDFDFHPSDLSEDESSEHEDDDELEMEQQPATPEPEHRP
FT                 TRRKTRLESGYVEWSDNSDSIRNFPFRRNEELLIPPPENQPISYFRHILTD
FT                 SFIEKLVEETNVYAVEVFLSEKTKEKSRVIAWNETTSDELLIFLGLLLHMG
FT                 HIRLNRLQDYWKKDPLFNIPVFSQNMSRNRFLLILRLLHFERNPEEGEPAP
FT                 DDRLYKVRGIIHLFNERMNEIYYPGRELSLDESMVLWRGRLTFRQYIKNKK
FT                 HKYGIKLYMLTNPTGIILKFMVYTGMLDDSGGKGHADKVVLKLLEEKLNVG
FT                 HSVFMDNYYNSYALARKLSQNETHTTGTLRIDRRNCPTDVKKKKKLMKGDT
FT                 IAKYANGVMIGKWKDKREVCYISNEYKNEMVDSANKRGQIRQKPLPIVQYN
FT                 KFMSGIDRQDQMLAYYPSERKTIRWPLKIFIHILQMIMINAHSLYNKYSGK
FT                 RANLYDFRLAVIRELLGQQPERKPAGKLTHRLTTRKEKTASGKIMRKYCKD
FT                 CHSRGKRKDTIYVCDSCPNAPGYCLDCAVITHKL"
XX
SQ   Sequence 2704 BP; 917 A; 491 C; 549 G; 747 T; 0 other;
     cacgttcgct gccgttcacg ctctggcgcg tgtaaacgtt acttgagtca ggtgccgctc        60
     acgctgtggc gcgtgctgcg acctagcatc ctattatggg ttgttgtaaa ctggcatcgt       120
     ctaataaagc tgtatactct ggtaggcact cagggaagag tataagtgat atgcacacat       180
     acgtggttcc agatttccgc gtttgcatta ccggctacga gccacacacg cttctcatga       240
     tgtcatgata gatttattgg attcttatgt aaacaagcat cgtttatggg ggaattacga       300
     tcacagcggt gttttggaac tctttgtatc acatgttgaa ttatgcattc gatatttcac       360
     gtctctgatt caagtactta cactatatcc tgctaatttc cttgccagct ctcagaaagt       420
     atagagtgta aaatattttc cgatttcagt ctttgactat cacgtatact gcaaggttgc       480
     agatgcttta tattcagcag aagaaatacg tacaaaacac ttatttcttg gtgaaactat       540
     gacaaataaa gatgaacctc tgcctggccc gtcaggcatg tcgggtagcc gaaaaagaaa       600
     gtggtgggaa gacaagaaaa aactaacgga tgaagagtta gagaagatac ttcaagaaag       660
     tgaaagtgac atcgaacctt tagactctga ctttgatttc cacccctctg atctatctga       720
     agatgagtca tccgagcatg aagacgatga tgaactggag atggagcaac aaccagcaac       780
     accagaaccg gaacatcgcc caacacgaag aaaaactcgt ctggagagcg gatatgtaga       840
     gtggagtgat aactctgata gtattagaaa ctttcctttc cgcagaaatg aagaattgtt       900
     gattcctcct cccgaaaatc aaccaataag ttatttccgg catattttga cagatagctt       960
     catagaaaaa ttagtagagg aaactaatgt ttatgctgta gaggttttct tatcggagaa      1020
     aactaaagag aaatccagag ttattgcgtg gaacgaaaca acttcggatg aactattgat      1080
     ttttctagga ctgttactgc atatgggcca catcagattg aatcgactgc aggattactg      1140
     gaaaaaagac ccattgttca acattccagt tttttcacaa aacatgagca ggaatagatt      1200
     tctattgatc ttgaggctgc tacattttga aagaaaccct gaagaaggag aaccagctcc      1260
     ggatgaccgg ctttataaag ttagaggtat aatacactta ttcaatgagc gaatgaatga      1320
     aatttattat cccggccggg aactcagcct agatgaatct atggttttgt ggcgtggtcg      1380
     tcttacattt cgacagtaca taaaaaacaa aaaacacaaa tatggcataa agctatatat      1440
     gcttacaaat cctacaggaa tcatcttgaa atttatggtg tataccggca tgttggacga      1500
     ttccggtggt aaaggccatg ctgacaaggt agtactaaaa ctattagagg aaaaactgaa      1560
     tgttgggcac agtgtattca tggacaatta ctataacagt tatgctcttg cacggaagtt      1620
     atcccaaaat gaaactcata ctacaggcac gctaagaata gacagaagaa attgtccgac      1680
     agacgtaaag aaaaaaaaaa agctaatgaa aggagacaca atagcaaaat atgccaatgg      1740
     cgttatgata ggaaaatgga aagacaaaag agaagtatgc tacatttcta acgaatacaa      1800
     aaatgaaatg gtcgacagcg caaacaaacg aggtcaaata aggcagaagc cacttccgat      1860
     agtacagtat aataagttta tgtcaggcat tgacagacaa gatcaaatgc ttgcctatta      1920
     tccatctgaa agaaaaacta tcagatggcc attgaaaatt tttatacaca ttttacaaat      1980
     gataatgata aatgctcaca gtttatataa caaatactct ggaaagagag ccaacctcta      2040
     tgattttcgt ctagcagtga taagagaatt actagggcag caacctgaaa gaaaacctgc      2100
     cggaaagctt acccacaggt tgacgacacg caaagagaag acagcttctg gaaaaataat      2160
     gagaaaatat tgcaaagatt gtcattctag ggggaaacgc aaggatacaa tttatgtgtg      2220
     tgattcgtgc cccaatgctc cgggttactg tttagattgc gcagtgataa ctcacaagct      2280
     ttaggcatag tgtccttttt tgaaatctac cttgcaacat tctttagagg aacatcttgt      2340
     gttattcatg taatcttttg tttctgattt cattgctttt gattatttta attttatttc      2400
     gattagttac cagtttataa aaaatacttc ttagttttga tattattcat acttatattg      2460
     ctgatgatat agaaataagc atatgtttta tgaaatacct tgtatgtact gtttatattg      2520
     ttcatttgtt gttttcacaa aaatacaaat gcaaataaaa aaccatataa aaaaactgaa      2580
     aactaaaacc aaaacattca gtggctcaaa actatgaaaa gatactgtca aaatacgatc      2640
     acgcgccaga gcgtgaagtg gcacctagca tcatcgcgcc agagcgtgaa cggcagcgaa      2700
     cgtg                                                                   2704
//
ID   piggyBac-13_LMi repbase;    DNA;    INV; 2223 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2223
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3345-3345 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(718..798,716..1255,1216..1527)
FT                 /product="piggyBac-13_LMi_1p"
FT                 /translation="MGQHEWSASFSRNSVTSAFLYNQNSQILWDNMNGRPV
FT                 FRVTVSLQRFYTIRILRFDNKEDRPARRRLDKLAVFEMFVEQFPKMFIPYE
FT                 NVTVDELQVPIRGRCPFRQYMTSKPRGKYGIKLWLLSDVKTAYVCAAEVYT
FT                 GKPENGPREVNQGRNVVLRLVERIEKTGRNITTDNFFTDYTLAKQLLQKIL
FT                 TLVESSERTKLRFRKKCILRKNKAEIPKEMLTNNSRQVFSTIFGFQKYVPL
FT                 DSYVPKKNKAVVLLSTMHHDSTVSAEEHKKPEVILHYNKTKGGVDMTDTLA
FT                 STYSCKRCTKRWPVYFITC"
XX
SQ   Sequence 2223 BP; 766 A; 367 C; 431 G; 659 T; 0 other;
     ccttcctatt gtgaatgggt ctaactgacc cagttcgttt actaaaatta acgtaaaccc        60
     ctaaatgtta tttattttgc aacatggcat tatgtattcc tcaaatacgt cattatttat       120
     gttatcctca attttcgttt caaaaactaa aatactttcg gagatacgta gctttgacac       180
     acttattgtg aatgggtctt ttagacccag gcggaaattt ttatttagtt tctacgaata       240
     aattgttaga aatacttgtg attggtctaa aatgtctcag aggcatttca cattgttgtg       300
     ggactctgta taacgactgc atataggcgt acagtctgat tttgtttgtc ggtttctaag       360
     tgatgaacag ttagaaaggc ttgtaaatga gtcataagat gaaacagaag attatactgt       420
     caatgatcaa gattctgttg acagttcaag tgatgttgct aatgtatcga ttagaagtga       480
     ggagagtgat gtgatcgaag gagacgaaag cgtggttttg ttgtctaaag aaaccagcgt       540
     aactggaaat gtatatacgt cgcgcaatgg tacatagtgg tctacaaatc ctccagctgt       600
     gtcaaaacca aggtgagcat aataaatttc tattacaaat caggaaatga aggcttattt       660
     gggacttctt atattagctg gtgtatagag atctgctgga gaatctctcc aatagctatg       720
     ggacaacatg aatggtcggc cagtttttcg cgtaacagtg tcacttcagc gtttctatac       780
     aatcagaatt ctcagatttg acaacaaaga agatcgacca gctaggcgac gccttgataa       840
     actggctgtc tttgaaatgt ttgtggaaca gtttcctaaa atgttcattc cttatgaaaa       900
     tgtcacagtg gacgagttac aggttccaat cagaggaagg tgtcccttcc gtcagtacat       960
     gacttcaaaa ccaagaggaa aatatggcat aaaattatgg ttgttatctg atgtgaaaac      1020
     agcatatgtt tgtgcagcag aagtctatac aggaaagccg gaaaatggac cacgagaagt      1080
     aaatcaaggt agaaatgttg tattgaggct tgtggaaaga attgagaaaa ctgggcgaaa      1140
     cattaccact gataatttct ttacggacta cactctggcc aaacaacttc tgcagaaaat      1200
     tctaacatta gttgaatcct cagaaagaac aaagctgaga ttccgaaaga aatgctgaca      1260
     aacaacagta gacaagtgtt ttcaaccatc tttggatttc agaagtatgt accactggat      1320
     tcgtacgtgc caaaaaagaa taaagctgtc gtattactct ctaccatgca ccatgactct      1380
     accgtgtctg cagaagagca taagaagccg gaggtaatac tgcattacaa caaaacgaaa      1440
     ggaggagttg acatgacaga tacactcgcc agtacgtatt cctgtaaaag gtgtactaag      1500
     cgatggcctg tttattttat aacatgctag acattgctgc aataaatgct tatgtgttgc      1560
     atgtacacac taacccaggc tactattgaa acaaattgta caaaagacgc ctttttctaa      1620
     gagagctaac aagaacaatg caagaaaaca gaatgtccaa aaatattcct aaaaagataa      1680
     aagtaaattt ggaaaatatt gcaggaacga gttctggagc aaaggaacag aaaaggggcc      1740
     agtacaaaga gtgtggaccg aagaaagatc gaaagactaa taagaaatgt aacatttgtc      1800
     aatcattcct atgccaagat catgcaaata tttactgcaa taattgtgta agctaataca      1860
     acacgcatat attgaagcta aatattgttc ttcagaatta attatcatat ttcattgtaa      1920
     ttttaggtta attagtgttt gcaataagtg acaaaattta agctttagct tgcactttta      1980
     tgcaacaatt cacttataaa aacttgtatg aacattgttt cacaatctaa aatgtaataa      2040
     ttttttacac taattacgtt caataaatgc tggaaagctt caatatctgt ttttccacat      2100
     gaaaaaacta tatataaaat atattttgaa gtaacatcga agaatatata tatattttta      2160
     aattgcgggt ctaactgacc cattcacaat atgtgtgtct ctgtttcgaa cacaatagga      2220
     agg                                                                    2223
//
ID   piggyBac-14_LMi repbase;    DNA;    INV; 2428 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2428
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3346-3346 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(292..1194,1273..2079)
FT                 /product="piggyBac-14_LMi_1p"
FT                 /translation="MNVNNCEQIRKWLEEDLISEDGSDPDDAWSDTEVADI
FT                 PENHVLQESHDSESEQQAGSDSTSDGEEPTRNSQGRTDEISRRGKTYCSKN
FT                 NFLWHGCPRTTRSRRRLHNIVSETPGIRREYRDXINSESSAEDIWNLLFDE
FT                 NILNKIIASTNQHLEKYKCKYEDKSNCYDVDVVELRALFGMLYYSAIFKEN
FT                 HEDFTNWYSSDGTGRDIYRSIISKNRLKTLLLALHFDDHTTREERRKTDPA
FT                 APITEVFDAFITNSRSIYCIGTSACVDEMLVAFRGRCKFKMFMPKKPAKYG
FT                 VKIFMPHRCNIQETSQAVLKLAEHIIGSNRNITADNWFTSIELVQELQRKG
FT                 LTYVGTIKKNQKEIPAAFKASPTRPVGSSLFGFCDDLTLVSYVLKKSKAVI
FT                 LISSMHHDCTVDSTTKKPEIIMYYNANKFGVDLLDQRCANYNTARRTQRWP
FT                 MAIFYRLLDIGGSNAFIIYNTVHEQKIRRFDFLKQLAGQLARPNMMCRAYN
FT                 HHIPRELREVIRRILKVPEEKPQGEEKLEKRKTCYTCDPKKKKRKTFHACF
FT                 MCRKPICVECSQTMCKQCRINLD"
XX
SQ   Sequence 2428 BP; 790 A; 460 C; 495 G; 681 T; 2 other;
     ccctctacag gccaggtgcg gtctctgtga ccgatgcagg tttctttttc ggttcattcc        60
     agttcacact gtagctcgac ggcttcgacc ctccccctac cttcctaatt ctgtctgtta       120
     ttgctgccag tccaattgtt gcggttgtgc gcatactcat tgttcagtta tttcgtttct       180
     gctcagtttt cggtcaccgt gaccgcacct ggcctgttgt cgctcggttt tcagtcagca       240
     tgaccgcacc tggcctgttg tgtacttagt tttcgtttta cccaaacaga aatgaatgtg       300
     aataattgtg aacagatcag aaagtggctt gaagaagact tgatttctga agatgggagt       360
     gatcctgatg atgcctggag tgatacagaa gtggctgata ttccagagaa tcacgtactt       420
     caagaatctc atgattcaga atctgaacaa caggcaggtt cagattcaac ttcagatggg       480
     gaagagccta caagaaactc ccaggggagg acagatgaaa tcagtcgaag aggtaaaact       540
     tattgtagta aaaataattt tctttggcat ggctgtccgc gtacgactcg tagtagaaga       600
     cggttgcaca acatagtctc cgaaacaccc ggtattcgtc gtgaatatag agacsaaata       660
     aatagtgaat cgagtgcaga agatatttgg aatcttttat ttgatgaaaa cattctgaac       720
     aaaatcatcg catctacaaa tcagcattta gaaaaatata aatgcaagta tgaagacaaa       780
     agtaattgtt acgatgtaga tgttgtagag ttgagagcat tgtttggtat gctatattac       840
     tccgcaattt tcaaagaaaa tcatgaggac ttcacgaact ggtacagctc cgatgggact       900
     ggtagagaca tatacaggtc aattatttct aaaaatagac tgaaaacctt gctgctagcc       960
     ttacacttcg acgaccacac aacaagagaa gaaaggcgca aaacagaccc tgcagctccc      1020
     ataacggagg tttttgatgc ttttattaca aattcaagga gtatttactg tatcggcaca      1080
     tcagcgtgtg ttgacgaaat gttagtagca tttcgtggcc gttgcaaatt caaaatgttt      1140
     atgccaaaga aaccagccaa gtatggtgta aaaattttta tgcctcacag atgctgaaac      1200
     aggatactta cataatgcct atatatacgt tggaaaagac tcagacggaa aatatttgcc      1260
     agaagaatat aaaatattca agaaaccagt caggccgttc tgaaacttgc tgaacatatc      1320
     attgggagta acagaaacat aacagccgac aattggttca cgtcaataga attagtacag      1380
     gaacttcaaa gaaaaggtct gacatacgtg ggaacaataa agaaaaacca aaaagaaata      1440
     ccagcagcat tcaaagcgtc accaacacgt ccagttggct cttccttgtt tggtttctgt      1500
     gatgatctaa cgttggtgtc atatgtactg aaaaaatcta aggcagtgat tctcatttcg      1560
     agtatgcacc acgattgtac tgtagatagt acaacaaaga aaccggaaat aattatgtac      1620
     tataatgcca acaagtttgg tgtggaccta ctggatcagc gttgcgccaa ttataacacg      1680
     gcaagaagaa ctcaacgatg gccaatggcg attttctatc gactgcttga cattggtggc      1740
     tcaaatgcct tcatcattta caatacagtc cacgagcaaa aaatacggag gtttgatttc      1800
     ctgaaacaac ttgctggaca gcttgcacga ccaaatatga tgtgtcgtgc atacaatcac      1860
     cacataccac gagaactacg tgaagtcatt cgcagaatcc tcaaagttcc agaagagaaa      1920
     ccscaaggtg aagaaaaatt ggaaaaaagg aaaacatgtt atacatgtga ccctaagaaa      1980
     aaaaagagaa aaacttttca tgcttgtttt atgtgtcgaa aacctatatg tgtagaatgt      2040
     agccaaacca tgtgtaaaca gtgccgaatt aatttggact agtctacacc tttttatttc      2100
     atgaatttat tatgtataaa aggcacttca attaggaaat tgttaaaaaa tgttcaaaac      2160
     aagtttgttg cttattcaaa agcatcttta ttgcagatgt atactgaaac cgatttgcga      2220
     ataattcctt ctgtttgttt ttggtttaca aaataaaaaa gtattctcaa gttgtctttt      2280
     gttttcattt tttattcaca acactttcaa gaagcgttga agcatttgta cgcatagaaa      2340
     tgatgtttaa agtagcaata aattagtgcg gtcaccatga ccgcacatgg cctgttaagt      2400
     tacaaataat gacccggcct gtagaggg                                         2428
//
ID   piggyBac-15_LMi repbase;    DNA;    INV; 2444 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2444
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3347-3347 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(754..981,988..1524,1478..1750,1686..2021,
FT                 1999..2139)
FT                 /product="piggyBac-15_LMi_1p"
FT                 /translation="MECKDSCGTVWKQCLFGGRLPIIYFERISWTTPHAKR
FT                 NVMNLYQVLGLVHRHKSNYLEMYHNRGTPILEMTAVNDNTGSFYSNYLCSW
FT                 CEWLSNADLHRLLGPPFEIMRSREKFTRSVRLQNDKFALVSAVWNRFIENC
FT                 TTCYKPGTDITIDEQLFPSKTRCPFTKFMASKPDKYGQKYWLAVDVESKYI
FT                 LNGFPYLGKDTARSQDERVSDYVVMRLMEPFLGKGRNVTTDNYFTSLKLAK
FT                 KTERKINLHCRNSKPKKLKERSTSIVGTVNRARRGIPHALKSLRSPLHSTK
FT                 VLKHDDISLTVYQGKKVKNVLVMSSLHPSATISTNEKKKAPRNCKLLQQNK
FT                 IWGVQMRKKKLHETVSYYNKTKFGVDMVDKMARQYSVKASSRRWPVHSFYN
FT                 ILDLAGINAYVVFRAVTGKKIKRRNFIQQLADELRSEYVKNRFPRMTTAIM
FT                 EIMKMRRNATETPDETPQKRRKCQVLKFCKVIKLFPSALFVRRWFVENVQR
FT                 KLNINVSIM"
XX
SQ   Sequence 2444 BP; 804 A; 427 C; 487 G; 720 T; 6 other;
     cactaaaacg cccagagggg tcaaaatgac ccttttcgat ttttaagtga twgctgtgtt        60
     ttgaagaatt gttagggcaa catttcttgt catgacattt atttatttcg catgtacttt       120
     cattatactg aaaaacagcg catttcgccc aactgattat castttcttc cagttttacc       180
     tttaacgccc agaggggtca tattgacccc ttcagataaa gctatgcctt acaaccatct       240
     catgcattct gaagtgtcgg cgactttatt ttktggtgca ataattkact ttcgttcata       300
     ttattgcggt atgaaatgac aamaatggaa ccagtccgac attgttgtca ttcccttgta       360
     agaatcagtc tttcaaaggt gattgtgagg tgaagactga aatgaattgc acagtactta       420
     tgtgacgaag agattcttgc agagttacaa agagttatgg agtgtgattc agatggtggc       480
     gaactttttt tgacgattca gaagaagagt ttgtactgca ggcattcaga gaagatctga       540
     cagtaatgat tctaattctt cagatacaga aaatggatga cagtctataa gtatattatt       600
     attattttgc taattataat catcgtatct tatcaattta ctgacttaat ttagatttta       660
     ggtcttttct aacatttctg cgctccatga cagaagaata agtaagaaga ggagatattg       720
     tcctcagagt gtagactgac tgcttctctt ctgatggaat gtaaagactc ctgtggcaca       780
     gtctggaagc agtgcctttt cggtggacgt cttcccatca tatattttga gagaatctcc       840
     tggactacac cacatgcaaa aagaaatgtg atgaacttgt atcaagtgct tggacttgtt       900
     catagacata aatcaaacta tcttgaaatg taccataaca gaggcacacc gatactagaa       960
     atgacagctg tcaatgacaa ctgatgaact ggaagctttt atagcaatta tttatgctcg      1020
     tggtgtgagt ggttgtcgaa tgcagaccta cacagactcc tggggccacc atttgaaatt      1080
     atgagatccc gagagaagtt tacacgatct gtacgattac agaatgataa gtttgcattg      1140
     gtttctgctg tttggaacag attcatagaa aactgcacaa cgtgttacaa acctgggaca      1200
     gacataacaa tagatgagca gctcttccca agtaaaacta ggtgcccgtt cacaaaattc      1260
     atggcttcaa agcctgataa gtatgggcaa aagtactggt tagctgtaga tgttgaaagc      1320
     aaatatatac tcaacggttt cccttatctt ggkaaggata ctgcacgatc ccaagacgaa      1380
     agggtttcag attatgtagt gatgcgtctt atggaaccat ttctgggcaa aggcagaaat      1440
     gtcactacag acaattactt tacttcactc aaactagcca aaaaaactga aagaaagatc      1500
     aacctccatt gtaggaacag taaatagagc aagaagagga ataccacatg ctctgaagtc      1560
     cttgaggagt cctttgcatt cgacaaaagt tttaaaacat gatgatatat ccttgacagt      1620
     ctatcaagga aagaaagtaa aaaatgtgct agtaatgtct tcccttcatc ctagtgctac      1680
     tataagtaca aatgagaaaa aaaaagctcc acgaaactgt aagttattac aacaaaacaa      1740
     aatttggggt tgacatggta gacaaaatgg ccaggcagta ttcagtcaag gcttcctcaa      1800
     gaagatggcc agtgcattcc ttctacaata tccttgacct ggcaggaata aatgcatatg      1860
     tagtattcag ggctgttact gggaagaaga tcaaaagaag aaattttatc cagcagcttg      1920
     cagacgaact acgctctgag tatgtgaaga atcgctttcc tcgtatgacc acagcaatta      1980
     tggaaataat gaaaatgaga cgaaacgcca cagaaacgcc gtaaatgtca agtactcaaa      2040
     ttctgcaaag taataaaact atttccaagt gcactgtttg taagaagatg gtttgtggaa      2100
     aatgtacaaa gaaaactgaa tataaatgtg tcaattatgt aaaacaatga agtagctaaa      2160
     attcagtatt tttagcattt ataacagaaa aacctgtaac ttgcttacta ttgtttgggt      2220
     tctaccagtt cagtgaaatt tatttatatg tcaataaata atatgatttc tatctgtgct      2280
     ttttattcac aattctgtat ctgaaaaggc ttatatacac attaaaatat aacaaatgct      2340
     taacattttt aattaacaga tcagaacatt tttgttaaat ggtaggggtc aaaatgaccc      2400
     ctctgggcgt tcgagggggc agggaaagtc tgggcgtccg agtg                       2444
//
ID   piggyBac-16_LMi repbase;    DNA;    INV; 2342 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2342
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3348-3348 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(315..953,895..1242,1116..1634,1556..2032)
FT                 /product="piggyBac-16_LMi_1p"
FT                 /translation="MTSEEIARSLQELSDLSDESDHELCSSDSAQEEEVIQ
FT                 ESEHGSDSEQDVLSGTEGDSYSSANVAFFIGRDNITKWRKTQYVKRCKVRS
FT                 KNIVNVVPGPRSSADDLISELSAFHKMIDESMVDNIVTHTNLYIQKKSESI
FT                 QYSRDRDAKETSRSEILAVLGCLYLIGVKKGHHTNARELWNSDGTGLQVLR
FT                 ACMSYKRFLFLLRSLRFDDKDTSATKDFCFYSDLYDLMTRTRAERRKIDKL
FT                 AAIRPFLQPFVLNCRNSYNLGPYVTIDEKLEAFRGRCSFIQYIPNKPAKYG
FT                 IKIFAMCDSKTFLQVIWRYTVVNKRMVHIRLQTRQATTCKIRNKDICYVRF
FT                 KNIFTSNLEVYCGKQEDGPYQTSNTPSDIVLRLIPDIEGSNRNITFDNWYT
FT                 SYPLATALLKKQLTCVGTLRKDKREIPVEFQANKNRIVGSSLFGFQKDVTL
FT                 ASYVPKKNKSVILLSTMHDRPKLDDKTNKPEIIMDYNVTKGVLTPWTNYAM
FT                 PTMSRANNNGLQRDKRGVDTVDQLCNAYNVSRITRRWPMRVFYSFMNVAGI
FT                 NAQILYSSNPNNPRYARRIFLKNLAMALMKPYLIERSKIMSLPGDISAFLR
FT                 KYREPLEKDNVSPPTSQRSATKKRGRCVTCGRAKDVSTTIMCNICKKFVCK
FT                 KHVTMTCNNCNQ"
XX
SQ   Sequence 2342 BP; 757 A; 461 C; 503 G; 621 T; 0 other;
     ccctcgagcg ggcgcgctgg ggtatagagt accccacgtc ttgtttaccg ctagtgacaa        60
     cgctgcctcc cgtcagcgat tacgtgcacg ctagtattac tctcctgttg tcgcagctac       120
     ctaccgctgc aattagtttt actgtggagc tttctgtgtg cctgtgttgt cagaacgctg       180
     ctggtgtata aagtacctca cgtgcctgct gctgtaggta aatacatatt tcttatgtac       240
     acacaaacgt gcatcgttat tcatatcaga acagtagttt gaaaaactga ttagcttctt       300
     acttattcag ggaaatgacg tctgaggaaa tagccagaag tctgcaggag ttgtcagatt       360
     tgtcagacga atctgatcac gaactgtgca gcagtgacag tgctcaggaa gaggaagtaa       420
     ttcaggaaag tgagcatggc agtgattcgg aacaagacgt cctgtctggt actgaaggtg       480
     acagttattc gagtgcaaat gtggcgtttt ttataggcag agataacatc acaaagtgga       540
     gaaaaactca atacgtcaag cggtgtaaag tgagaagtaa gaatatagtg aatgtcgttc       600
     ctggtcctag aagcagtgca gatgacctca ttagcgaact ttctgcattt cataaaatga       660
     tagacgaaag tatggtagat aatattgtca cccatacaaa tttgtatatt cagaagaaaa       720
     gtgaatcaat acaatactct cgtgatagag atgcaaagga gacatcgcgg agtgaaatac       780
     tggctgtact gggatgttta tatctaattg gagtaaagaa aggacaccac actaacgcac       840
     gcgagctatg gaactcagac ggaacaggac tgcaagttct aagagcatgt atgagctaca       900
     aaagattttt gtttttactc cgatctttac gatttgatga caaggacacg agctgaaaga       960
     agaaaaattg acaaactagc agccattcgt cctttcttgc aaccgtttgt tctcaactgc      1020
     agaaattcat acaacctggg accctacgtg actattgatg agaaactgga agctttccgt      1080
     gggcgctgca gtttcattca atatattccc aataaacctg caaaatacgg aataaagata      1140
     tttgctatgt gcgattcaaa aacattttta caagtaattt ggaggtatac tgtggtaaac      1200
     aagaggatgg tccatatcag acttcaaaca cgccaagcga catagtgttg cgcctaattc      1260
     ctgacattga aggcagcaat aggaacatca catttgataa ttggtacacc agttaccctt      1320
     tggcgacggc tctcctaaag aaacaactca cttgtgtcgg aacactgagg aaggacaaaa      1380
     gagaaatacc tgttgaattt caggcgaaca aaaatcgaat agttggttct tcactttttg      1440
     gattccaaaa agacgtcact cttgcgtcat acgtaccaaa gaaaaacaaa tccgtgatac      1500
     tgctgtcaac gatgcatgac cgaccaaaac tggatgataa aacaaacaag cctgaaataa      1560
     taatggacta caacgtgaca aaaggggtgt tgacaccgtg gaccaactat gcaatgccta      1620
     caatgtctcg cgcataacaa gacgatggcc aatgcgcgtc ttttactcgt tcatgaatgt      1680
     agcgggaatc aatgcacaaa ttttgtattc ctcaaatcca aataacccac gttatgcaag      1740
     aagaatcttt ttgaagaatt tagcaatggc actgatgaaa ccctatctaa tcgaaagatc      1800
     caaaataatg tctctgcctg gtgatatttc agcattcttg cgtaaatatc gagagcctct      1860
     ggaaaaggac aacgtatcac cgcctacttc tcaaaggtca gcaactaaga aacgtgggag      1920
     gtgtgtaacg tgtggccgag caaaagatgt atcaacaacc attatgtgta atatatgcaa      1980
     aaagtttgtt tgtaagaaac atgttacaat gacgtgcaac aattgtaacc agtaagtctt      2040
     tgttcaattg tggcgtattt ggcgagtcct aaaatgtaga gaacacgtaa taaattgaaa      2100
     aataaagtat gtaaacctct actgaaacac attttgttgc cttttcatga aatatgtaaa      2160
     atttacccta aaaacatcaa ataaaaactc aggtttacaa tgattatgct cagtatgtgt      2220
     attcacaaag taaacgccag ttttccaaag tttgatatcg tattatgaaa tttatgctct      2280
     ggggtataag ataccccgcg cgcctattcg acacttggca atgcggcgcg cccgctcgag      2340
     gg                                                                     2342
//
ID   piggyBac-18_LMi repbase;    DNA;    INV; 2767 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2767
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3349-3349 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(280..630,741..1367,1346..1810,1756..2247)
FT                 /product="piggyBac-18_LMi_1p"
FT                 /translation="MLVTEVYSHCLNLKAQQCNMSFIVCYWVSHKQDRLFE
FT                 YWSQSSRHGSDVTGYNHGHGHFQMKKLSHFCMKRMLKMILKLRTLWKILQM
FT                 KITNLSLMWRVTAPRLKMKVIYIHLYYYYLSNCLFPHAVAEPGPSSNINNA
FT                 REGPTLGKKXTAPPVSGPIQNRRRRGERSEGSLPEPGSKLLGKDGITEWTV
FT                 ADFGVTTPGRIGQQNILKETRGPTPHAKRHVSNDNVSSAWRLLVDQSMLKH
FT                 IKKCTEAEAQRLLGNDSWSLHLEELDAFVALLYVRGALGARCIEVDELWSK
FT                 KWGAPFFTDTMSRNRFREILKYLRFDEKIHGRNVKNTRSERLKSDKFALIS
FT                 TTWNHFIENCQLNYIPGSNVTVDEQLFPSRTRCPYLQYMPNKPDKFGIKFW
FT                 LLADVETKYLCNGFPYVGKNEQRAPNEKLPEQVVMKLVAPYRNKGRNVTTD
FT                 NFFTTVTLGERLEKEKTSLVGTINRARKEIPNTIKKSCRHYQPCKKRNSEH
FT                 YKKMKTPLYTSVLLKREGGTLTVYQGKKNKNVLLYSTMHTDVEIQNNSKHL
FT                 PETVSFYNSTKFAVDVLDQMTRKYSVRSGTRRWPVHVFHNILDLAAINAWI
FT                 IFKLVTGIKISRRNFILNLAEELRRAYMETRNQERMPREGKGRKGRW"
XX
SQ   Sequence 2767 BP; 911 A; 468 C; 577 G; 808 T; 3 other;
     cactaggaca atctgaccac tttttatatt ttaacatgtt attcggtcaa ttctaatcta        60
     tgctgttgtg agttaatgac ttttcctaaa tgtttatgta gatcatataa atagtccaat       120
     atttatttta tcttcattag ttttctttga atgaccactt agaaccgccg agtggtcact       180
     ttgaccgcat tacatgaata tttgaaaaca ggttatttaa agattgttgt gcgtcactcc       240
     ccggatttat tcttagcact cgtcaamaat gtactaaata tgttggttac tgaagtttat       300
     tcgcattgtt tgaatttaaa agctcaacaa tgcaatatgt catttattgt ttgctattgg       360
     gtttcgcata aacaagacag attatttgag tactggtctc agagcagtag acatggctca       420
     gatgtcacag gatacaacca cggccacggc cactttcaga tgaagaaatt gtcacacttt       480
     tgtatgaagm ggatgctgaa aatgatcctg aagttgagga ccttgtggaa gattctacag       540
     atgaagatta ccaacctgtc gctaatgtgg agagtgacag ctccgagact gaagatgaag       600
     gtaatttaca ttcacttata ttattattat tagttactat atgaataatg atcactatta       660
     taacagagct gacacttcta ctgctacttc tgttactgct attttattgt gtggtatgtt       720
     atctttataa tgagttgtag ctttctaatt gtctctttcc tcacgcagtt gctgaaccag       780
     gaccaagcag taatataaac aatgctagag aaggacctac cctgggtaaa aaaakaactg       840
     cacctcctgt aagtggacca atacagaatc gacgtagaag aggagaacga agtgagggtt       900
     cacttccaga acctggctca aaactcctgg ggaaggacgg gatcacggag tggactgtag       960
     cagacttcgg tgttactact ccaggtagga taggtcaaca gaatatattg aaagaaacac      1020
     ggggacctac tccacacgca aagcggcacg tctcaaatga taatgtttcg agtgcctggc      1080
     gccttttagt tgatcaatca atgttgaaac acataaagaa atgcacagaa gcagaggcac      1140
     aacggcttct tggaaatgat tcctggagtt tgcatttaga agaattagat gcatttgttg      1200
     ctttattata tgttcgtggt gcactaggtg ccagatgtat tgaagtagat gagttgtggt      1260
     cgaaaaagtg gggagcccca tttttcactg acacaatgag cagaaacagg tttcgagaaa      1320
     ttttgaaata tctgcgtttt gatgaaaaaa tacacggtcg gaacgtttga aaagtgacaa      1380
     atttgcactt atatcaacta cttggaacca ttttatagaa aactgtcagt tgaattacat      1440
     acctggatca aatgtcactg tggacgaaca acttttcccc agcagaacca ggtgtccgta      1500
     tttgcaatat atgccgaata agcctgataa attcggaatc aaattctggc ttctagcgga      1560
     tgtagaaaca aaatatcttt gtaatgggtt cccttatgta ggaaagaacg aacagagggc      1620
     acctaatgag aaacttccag aacaagtagt aatgaagttg gtagctccat atcgcaataa      1680
     ggggcgaaat gtgactactg ataatttttt cactacggtc acacttgggg agagactgga      1740
     aaaagagaaa actagtcttg tcggcactat caaccgtgca agaaaagaaa ttccgaacac      1800
     tataaaaaaa tgaaaactcc tctttatacg tctgttctct tgaaaaggga aggtggtact      1860
     ctgactgttt accaagggaa aaagaacaaa aatgttcttc tgtatagcac catgcacaca      1920
     gatgttgaaa tacaaaataa ttcgaaacac cttcccgaaa cagtgagctt ctacaatagc      1980
     acaaaatttg ctgtagatgt cttggaccag atgacgagga aatattctgt ccgctctggt      2040
     actcgtcgat ggcctgtaca cgtatttcac aatatccttg atttagcagc catcaacgca      2100
     tggatcattt tcaagctagt gacagggatc aaaataagta ggaggaattt catcctaaat      2160
     ctagcagaag aattacgtag agcctatatg gaaaccagaa atcaggaaag gatgccaagg      2220
     gaaggaaaag gaagaaaagg aagatggtga tgaagaaaga gaagaagcgg aaattcctgc      2280
     gaaagtaagg aaactatgcc aaacgaggaa atgcagaaac aagacaaatg aagtgtgcag      2340
     taaatgcaag agatatgttt gtgggccgtg tacatataaa ttaataaaga cagtagtttg      2400
     taatgcttgt aagtaggatt aggtactata catggtcata ttttatgatt ggtctttctc      2460
     ttaacatatt catgggtact tagtttctcc agtaagatta atttctatta attttaaact      2520
     actgcaatac aattagtatg gttgcagata aatattgtga actatgttct ttaatattag      2580
     taatattatg ttcccattgt tgttgtaaaa tacaatgata ctgttattaa acgtaattaa      2640
     agtgatacat tgttatcaag gtcattaata tttacattaa acagcacagc atgtaattac      2700
     aaagaaagtg gtcactttga ccacatcggc ggttctaagt gtagtactag ttccggcggt      2760
     tctagtg                                                                2767
//
ID   piggyBac-19_LMi repbase;    DNA;    INV; 2344 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2344
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3350-3350 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(693..893,862..1209,1213..1620,1515..2150)
FT                 /product="piggyBac-19_LMi_1p"
FT                 /translation="MEMKHGKNPVRLHGRQPARNILKTAPGPTRHTVRNVN
FT                 TVQSAFELFMKPSIFQIILKWTNKEGHYFRSGPTKRVITFGNKWTDIDREE
FT                 FECFLGLLILAGVYKGHNEGIVNLWNEEHGDLFSIVLLGTALQKYHAVFGL
FT                 MMLSTAQNRSPDKLAPIRDLFEQWVSTCMMHTNHMRILQLMNNWLSGVGVH
FT                 FASTSPQNRKVCIKIGLHVTALITMSHTCRCTQERAKASKINQGKRVVLEL
FT                 TEHLSGSGRNITTDNFFTSLELAKELERKQMTLLGTLRKSRSELPAEFIEA
FT                 RGRTAGSSLFGFQESATIVSYCQKRVRTTCRIYRSKGKNCRFISLRIPGIS
FT                 YNSLLLPKKGKIVTLLSTMHFREEIGDGEAAKPIIILDYNATKSGVDTMDK
FT                 LVRTYTTKRMTRRWPMVIFYNILDISALNAFIIWLDLNPDWNKKTNYKRRE
FT                 FLLELGTSLVQKNRSQRSKASLPRPPPPSAQVHTGVKRGRCYLCERSVDRK
FT                 HSETCRRCFSFVCKHHSDILCFKCKELLCFTCKDL"
XX
SQ   Sequence 2344 BP; 761 A; 414 C; 498 G; 671 T; 0 other;
     ccctcctact accactgggg tcaatatgac cccataagca catttgaaat atatatctcc        60
     cttattttca atgcgattat tttcaaaatt tatgactttg tctctctaac ttgcttgtat       120
     gcaatgacat attattcagt tttacattta caacatatta aaatttattc atgggctatg       180
     cactgagtac cactggggtc agcatgaccc caatctaaat ttttttgttt tgtttcttga       240
     atgtaacatt atgaaaacag aacagcgaat attacgttga acagatgtta taggaaacac       300
     ctgcaacaat gaaactaaca ctttccactt cttatttata cccattgttg tcgtttcttg       360
     cctcagcagt tgttgtgtgt tgcctcagtt gttgctagtg ttttgtctca gcgtgtgcaa       420
     gaactacatt atgtctagaa aacgtctgag tagtgctgaa atacaagcaa ttttgaatga       480
     agaagaggaa ttaggagata cagcgtctga tgacgacgaa gagattgatg gtgttatttc       540
     tggaggtagt gaatcaactg aagattctga tgaagacgtt ggagatttgg aaactcctga       600
     agctgatggc atatcagatc agaatgtttt caagtaagta taaataatct gcaataataa       660
     tatgtaagta atccattttt tcaggtcgag aaatggaaat gaaacatggg aaaaatcctg       720
     ttagattaca tgggagacag ccagcacgaa atatattgaa gacagctcca ggtcccacga       780
     gacatactgt aaggaacgta aatactgtgc agtcagcatt tgaattattt atgaagccca       840
     gcattttcca gattattttg aagtggacca acaaagaggg tcattacttt cggtaacaaa       900
     tggacagata ttgatagaga agaatttgaa tgctttcttg gcctgcttat tcttgcgggg       960
     gtgtacaaag gtcacaatga gggcatagtg aatttatgga acgaagagca tggcgaccta      1020
     ttttcaatag ttctgctagg aaccgcttta cagaaatatc acgctgtatt cggtttgatg      1080
     atgctcagca cggcgcagaa tcgtagccct gataaattgg ctcctataag ggatttattt      1140
     gagcagtggg taagcacttg catgatgcat acgaaccaca tgagaatatt acagttgatg      1200
     aacaactggt aactttcagg ggtaggtgtc catttcgcca gtacatcccc tcaaaaccgg      1260
     aaagtatgta taaagattgg gctgcatgtg acagcactaa ttactatgtc acacacctgc      1320
     aggtgtacac aggaaagggc gaaggccagc aaaataaatc aggggaaaag agtagtgtta      1380
     gaactgacag aacatttatc tggaagtggt agaaatatca caacagataa tttctttaca      1440
     agtttggagt tggcaaagga actagaacga aaacaaatga ctctgctagg aacactaaga      1500
     aaaagtcgaa gtgaactacc tgcagaattt atcgaagcaa ggggaagaac tgcaggttca      1560
     tctctcttcg gattccagga atcagctaca atagtctcct attgccaaaa aagggtaaga      1620
     tagtgacatt gctgagtact atgcatttca gggaggaaat aggtgacggc gaagcagcga      1680
     aacctattat aatcctagac tataatgcaa caaaatcagg tgtagacact atggacaagt      1740
     tagtcagaac ctacaccaca aaacgtatga caagaagatg gcccatggtg attttttata      1800
     atattttgga tattagtgcc ctgaatgctt tcataatttg gttggactta aatcctgact      1860
     ggaataaaaa aaccaactac aaaagaagag aatttcttct ggaactggga acaagtctag      1920
     tacagaaaaa cagaagtcag cgcagcaaag cttctctgcc tcgtcctcct cctccttcag      1980
     cacaagtgca tacgggggta aaacgtggac ggtgctacct gtgcgaacgt tcagtggata      2040
     gaaaacattc agaaacgtgc agaagatgct tttcctttgt ctgtaaacac cattcagaca      2100
     ttctttgttt taaatgtaaa gagttgcttt gttttacatg taaggatcta taagatcaag      2160
     tgttgagaca agatctgtaa gtgcttatat atctacttca cctggtttca atcagtaatg      2220
     tatgcttttg tgtcagttca ttaaaataaa ttaaatactg ccaatatatc ccgtgttaat      2280
     tacttggggt catattgacc ccaacggtac tcagtgtaac aaaaaaattc tggtagtagg      2340
     aggg                                                                   2344
//
ID   piggyBac-1N1_LMi repbase;    DNA;    INV; 2022 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-1N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2022
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3326-3326 (2014).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 2022 BP; 572 A; 423 C; 443 G; 584 T; 0 other;
     ccctttgagt gctgcagacg tgatatgccg cggcgctcca ccttgccgtg gggcctgcgg        60
     acgtcgtttg ccgcggcagt ggtatttccc gtgggccctg cagacggcat ttcccgcgcg       120
     gcctggccgg tacctgagcc ctaaagacgg catatgccgc agccggttcc actgcccgtg       180
     ggcctgcaga cgtcaatagc cgctcagggc tgctgcttac atgctgaccg ccacagcgtt       240
     ccgagcgctt agaatattta tcaaccgatt ctgagaaaac tattcaatga aaaattttca       300
     tttttttaca tcttatagtg tgatatattc gctcgataat gatctcacat tctattcgtt       360
     attccttata gttactgtgc tacatcaaat taagtaaact aatgcgcaaa attttgaaga       420
     gttcgcagac gaaaaatcgc attgcgtaga ctttgcgtat ggttgatttt agcacataca       480
     aagctgcgga tgaaatgtag gtaagatatc taaattttat ttaaggttga gaacagaatg       540
     ataacttatt tcattctcga gatatagggt gttatgtccg acggacagac gcgggaggtg       600
     cgcgcatttc tgtccatgcg gacttggcgg ctctacgaaa tacttgtcat ccgattttaa       660
     gaaaacagtt tcgtttgtag ctccagatcg taagagttca ctctaaattc ggactgtcat       720
     gcagtgtagc ccagtattca aacagaccga gaacatttcc ttatcggagc aatgtataaa       780
     ttaagaaaac aattgagata acggaccatt ctttgatgat tattttcttg cgaattacgt       840
     acttaaactt tacatgaact acggaaaatg caaggagata cccactacat aacttttacc       900
     aaaaacagag aagtgcctat acaataccaa ttacatttat gtgtctaata tttttcttgc       960
     ttcaattctt tgtttcctgt aataatagac taaacacatt tacacgaatg agaaaagctt      1020
     gcttcaggaa ctgtatatta atttcatatc tgaacgagga tctatttagt ttactcagtt      1080
     ataagtaaaa atttttgtgt gtttcagtaa ttacctgtaa gtaaaaccaa cgacgcgtga      1140
     ataatttaac ctcacgatat tatgcgggaa ttttcttcac aaaattgatt caagttaaaa      1200
     aatgtgtagg tggaaagtgg cacataaacg aaacttcatg tttcagaacc ttgtattgtt      1260
     aggttaccac atgccaagtt tcacgttcgt tatagcttta gtctctgaga tataacacgc      1320
     caaacgttgg aagttttttt ttgggcgccg attttttgag caactttgct tgaacttttc      1380
     tggctatata tagcacgtaa aattcttttc agtattattc ctatgagaac gtatacagtt      1440
     gtacatgata gccaagtttc atatctttca acgaaatatt gcccgagtta taacggctca      1500
     aagttgtcag gaattcacgc tcgccctgcg caaagtcgcg catggcgtca aacaactgac      1560
     tatatctcgg tcagtattgc ttcaacaaat cttaaaattt accaatgtgc attggggaca      1620
     tgttagaatg ttcacataaa atttcccgtg atggtcgagc tggaaaatgt tccgaaatta      1680
     ggcgatttga catggaatga cccaggagtt acatgttagc agcgtaagca gtttcagtgt      1740
     acattatgtc tgccgagcaa tcatttccag attcaaagct atggaataag tatccagata      1800
     tactgcgctt atttgtaacg tcagcgagca cactgactgc gagactgtcg cggccgccct      1860
     ggttgcagaa atagtcaggc cagggcgagg acggccgagc ggacagctcc aggcacagac      1920
     aatagtccgc ggaggtggct gccagcgcag gtagacggat taggcggccg caacggcagg      1980
     cctgactcgg ccagctggat cgcaggtgca gcactcaaag gg                         2022
//
ID   piggyBac-1_AAe repbase;    DNA;    INV; 3322 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A piggyBac DNA transposon family from Aedes aegypti.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3322
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1314-1314 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 29 sequences with >92%
CC   identity. TTAA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1243..3048
FT                 /product="piggyBac-1_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MIHFTDTDDLDLLALTFEGDVSEVEGIDVSDDEDEIE
FT                 AFHANTESPKCVKPQKDTPVKSGTKVRRNQNKTSAKQAASNQQGKKKGVST
FT                 RSKSKKKGTPPKWHEDESVCFDCIEPVVKSSKPPTKPMTPYQYFGLFIDSE
FT                 IISDICEQTNLYSSQQDETPIDVTSGDIEQHIGQLLLMGVTKVPSYRLHWG
FT                 STTRYAPIADVMPRNKFETIKRCLHFNDNTKIKQRDEEGYDKLFKVRPFID
FT                 ALRRNFLKIEPTPNQSIDEIMIPSKAASPLRQYNKNKPHRFGIKVEGRASS
FT                 DGILHDFSIYGGKTNNEPSGAWGISGDVVIKLIDTLPQNVPYRIFADNWFS
FT                 SYALVKEMKSRGLEYTGTVRQNRIPGFEMKKNLKAEGRGSFACNVSNDNIV
FT                 VVTWMDNKPINLISSCFGVQPIDEVKRWSVSDKTYKSIPRPLVVREYNCYM
FT                 GGIDLNDFLVALYRTQPGTKKYYMRIFYHLLDVSVVNAWLLYRRHMKQTGQ
FT                 EHMTLLNFRIDVANSLIQYGKKIVRRRGRPTNQPIQKRQREVASVGPSLEA
FT                 RYDGLEHWPVEDRRERCVLCKDRGSFSSFKCTKCDVCLCIKKGKNCFTAFH
FT                 LPPD"
XX
SQ   Sequence 3322 BP; 1119 A; 628 C; 673 G; 902 T; 0 other;
     ccctttcctt cccatggtag cacaggtgat ccaccacttt gcataggtcg tatacaaact        60
     ggacaagtta gatcataccc attttttcac cacatgttca catatgtttc atgaactact       120
     gtacaaagtt tcactagaaa tagacacttg gatttcaatt taaagcataa cgactgaagt       180
     aaagtcggca ttttttcaaa tttaaataaa gtggattttc aaacatccat attcagtaat       240
     atgaacataa ttttcaccaa acaaaaataa gaacaagctc gatttagtta tttttccaag       300
     attcaataaa gtttttataa tattctttac acaaaactat tgattttgag gaaaacgatg       360
     tggatcactg atgatccatt gggaacaaaa cgagattttc atcgattcta ttctaaccta       420
     tctttctgaa aacgaaactg tcatcacatt tgtttacgtc tcagaaagtt gttctaagtt       480
     cctcgtttcg aacgtgtttt aagtgaaaag tgatttttaa agaaacaata attgtttatg       540
     gacgctaaaa tggaaacgaa tgaaccagaa aaggctacac tcacggatga agaggatttc       600
     ttcggatttg aagcagatga tgaaatattt ccgggtatca cagacgagga ggatgcttct       660
     ggactgaaat tgaaacgccg ccgcaagagt aaattatctt ccgacaccaa tcttcctaca       720
     aaatggaccg aaaggatgcc ctgtggaaca atccaccgta gatcccgaga aggtgaagaa       780
     agaaagaatg tcccgttcga agatacttcg tacgaacacg aacaagtacc cagtgatgat       840
     ccgattccgc tggttgctgg gagcgatggt agtatttgag tttttaaaat ttttatcaat       900
     cgctaataat acaggtattt gtagattgca acaataagcc aataacattc gagggagata       960
     cttccgtgct tgaagaactt agcgaaccgg agaaaattat tgaaaccgga acgagccgac      1020
     ttcgcacatc tcttgaaact gccgatggac acaaaggtac cactgagcaa tcaacgattg      1080
     aaaccgataa cttcgatgac gatagtagtt ctgaagattt gttcgaagat cgtgatgaaa      1140
     catatgattt ttctaaatta aaaccgaaaa ctacaacaga gctggatgag tgggatggta      1200
     gtatatcaaa aattgattta ttacgaatct ataatataaa taatgattca tttcacagat      1260
     actgatgatc ttgatttgct tgcattgacc tttgagggag acgtatctga agttgaagga      1320
     atcgatgtat cggacgatga agatgaaatt gaggctttcc atgcaaacac ggaatcgcca      1380
     aagtgtgtga aaccacagaa ggatacacca gtcaaatccg ggacaaaagt tcgtcgtaac      1440
     caaaataaaa catcagcaaa gcaagctgca tccaaccagc aaggaaagaa aaagggtgtt      1500
     tctactagat cgaaatccaa aaagaagggc actccaccta agtggcatga ggatgaaagt      1560
     gtttgtttcg attgcattga accggttgta aaatcctcta aaccaccgac caagccaatg      1620
     actccttacc agtacttcgg gttgttcata gattctgaaa ttatttctga tatctgtgaa      1680
     caaacaaatc tttattcaag tcagcaggat gaaaccccaa tcgatgtaac ttcaggagat      1740
     atcgagcagc atattggaca gctactgctt atgggtgtaa cgaaggtgcc atcgtatcga      1800
     ttgcattggg gttctactac cagatatgcc ccgattgctg atgtaatgcc acggaacaag      1860
     tttgagacca tcaaacggtg cttgcatttc aacgacaaca caaaaatcaa gcagcgagat      1920
     gaagaaggat acgataagtt gttcaaggta cgcccgttca tcgatgctct ccggcgtaat      1980
     tttttgaaaa ttgaacctac acctaatcaa tcgatagacg agatcatgat accttcaaaa      2040
     gcagcatctc ctctacgaca atataataaa aacaaacctc accgattcgg tataaaagta      2100
     gaaggacgag caagttccga tggaattttg cacgattttt ctatttacgg cggcaaaaca      2160
     aacaacgaac cctcaggcgc atggggcata agtggcgatg ttgtaatcaa gctgattgac      2220
     acactaccac agaacgttcc gtatcgaatt tttgcggata actggttttc gtcgtatgca      2280
     ttagtaaaag agatgaaatc tcgtggactg gagtacacag gaaccgtaag acaaaacagg      2340
     attccaggat tcgaaatgaa aaagaatttg aaagctgaag gcagaggctc atttgcatgc      2400
     aatgtgtcca atgacaacat tgtcgttgta acgtggatgg acaataagcc gattaatctt      2460
     atatcatcct gcttcggagt gcagccgata gatgaagtaa agcgttggtc tgtatcggat      2520
     aagacttata aaagtatccc acgacctcta gttgttcggg aatacaactg ctacatggga      2580
     ggcatcgatc tgaatgattt cttggttgct ctatacagaa cacaaccagg caccaagaaa      2640
     tactacatga gaatttttta tcatttactg gatgtatctg ttgtgaatgc ctggttgttg      2700
     tataggcgcc acatgaaaca aacgggacag gaacatatga ctcttctcaa tttccgaata      2760
     gatgttgcca acagtctgat tcaatatgga aagaaaattg taagacgccg aggacgacca      2820
     acaaaccaac ctatacaaaa acgtcagcga gaagtagcat ctgttgggcc gtctctagaa      2880
     gcacggtatg atggactaga gcattggccc gttgaagacc gtcgagaacg ttgcgttctg      2940
     tgcaaagatc gaggatcatt cagttcattt aaatgcacta agtgtgatgt ttgcttgtgc      3000
     atcaagaaag gcaaaaactg cttcacagcc tttcatttgc caccagatta aatcgacgag      3060
     aggcgagaag agcacaactt acatataaaa agtatgattt tgcgtaaaaa tgaaaatata      3120
     aacagaaaca aaattgattt ctctttttta ctctagttgc agttatcttc ccaatggatc      3180
     acaggtgatc catcataaaa attatctatt ttagtttcat tcgaatattt gagtaaaact      3240
     ttacatcttt tgttctggta atttatccag atatcaaatt ttctattttt taactacaaa      3300
     aaacgtcgtg ggaaagaaag gg                                               3322
//
ID   piggyBac-1_BM repbase;    DNA;    INV; 2467 BP.
XX
AC   .
XX
DT   30-MAY-2008 (Rel. 13.05, Created)
DT   13-FEB-2013 (Rel. 18.02, Last updated, Version 2)
XX
DE   A piggyBac DNA transposon from a silkworm - a consensus sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element;
KW   horizontal transfer; piggyBac-8_SM; piggyBac-1_BM.
XX
NM   piggyBac-1_BM.
XX
OS   Bombyx
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae.
XX
RN   [1]
RP   1-2467
RA   Kapitonov V.V. and Jurka J.;
RT   "Families of autonomous piggyBac element from the freshwater
RT   planarian genome and two clear examples of horizontal transfer of
RT   piggyBac transposons between a flatworm and insect.";
RL   Repbase Reports 8(5), 535-535 (2008)Repbase Reports.
XX
DR   [1] (Consensus)
XX
CC   piggyBac-1_BM is a very young family of piggyBac transposons,
CC   characterized by 15-bp TIRs (one mismatch) and TTAA target-site
CC   duplications. The consensus sequence was reconstructed based on
CC   multiple alignment of 7 copies that are ~99.9% identical to the
CC   consensus). The transposase is probably incomplete due to
CC   deletion of its short N-terminus. Surprisingly, the complete
CC   piggyBac-1_BM DNA sequence is 88% identical to the planarian
CC   piggyBac-8_SM (Schmidtea mediterranea). The high nucleotide
CC   identity, including non-coding regions, between these transposons
CC   in two species diverged from their last common ancestor over 500
CC   million years ago, is a first clear evidence of horizontal
CC   transfer of piggyBac transposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           725..2263
FT                 /product="piggyBac-1_BMp"
FT                 /note="piggyBac transposase."
FT                 /translation="MPNKRTRRCMRFPSSSEDEDGSNVPNQQTEIAADGTI
FT                 WTRIEEGGVVGRLPIHSAFKDVHGPTAHAKRNIMKGNLSSAFLLLIDNHIL
FT                 EHIRICTELEASRVLGKTWTITQEKLKAFLAILYARGAYEGNTLRLQYLWN
FT                 KKWGPSFFSSTMSRRDFTDILRYIRFDKRNQRSQRLQTDKFALVSAVWDKF
FT                 IENSQNCFKPGAYITVDEQLFPTKARCRFTQYMPNKPHKFGIKFWLASDVE
FT                 TKYVVNGFPYLGKDETRNASTPLSEFVVMKLLEPYTMKGRTVTTDNFFTSI
FT                 PLALKLRSKSTSLLGTIRANKRELPKICKLKKDSMARFSTLLYQSNGCTLT
FT                 VYKSKPNKKVLLLSTKHKNIKIDKAAKKIPETVLFYNKTKFGVDVTDQMAR
FT                 KYTVKSGCRRWPLQVFFNILDLAGINSWILYKNTTGENISRKDFLFRLAEE
FT                 LASEYQTSRQKPHEADISTTAGTVSVRKWCQIGYCNNNKTTNICNKCKKSL
FT                 CGKCTKSKIYICRNCER"
XX
SQ   Sequence 2467 BP; 885 A; 397 C; 458 G; 727 T; 0 other;
     cactagattt accagaccag tcattttgac tggtcgtgca acttcaattc aaaattacta        60
     ctacattaaa tatttgcttt ccaaaatgat gttatgactt ttgtaggtat aagtagagaa       120
     tatattttat gaacttaatt ttactttata taatgttagt aacaaatata ttttttgtta       180
     taatgattta tacaagaacc agtcaaaatg actggtgcat gtttctagga agaaatgtat       240
     gatttcggga gaatcatgag accgtgaaaa tacaaatagt gcccatgctt cttttgttca       300
     ttacgttatc gttatcgagc cgatttgggc gattaccgta tctatacgat ttttttacga       360
     gtacttagtc caagcgatct ccaaacgtaa tcattcatct ttacccatac agtgacacgt       420
     aataaacatt tatgagtatt tgaaaaatat tcaaatatat gttcttcagc aagtagcctg       480
     cgtatcgtta ccccctaaaa atgtcaaaac gaataaaagt ttctacatat ttagaaatgc       540
     aacaaacata cctcaggatt gttcagatgt ggaaagtgaa ttatttgata gcgacggtga       600
     attattagat acacaaattg ctccacaagg caatgatgaa aatagtgcta atatcttgag       660
     tagtgatgag gaagttcttg atgaagacaa tataaatcag tcaagtgaca gtgattgcga       720
     aaatatgcca aacaaacgca cgagacgatg catgcgattc ccttccagtt cggaagatga       780
     agatggaagt aacgtaccaa atcagcaaac tgaaattgct gcagacggaa ctatttggac       840
     gagaattgaa gaaggaggtg ttgttggtag attaccaatt catagtgctt tcaaagatgt       900
     acacgggcca acagcacatg ctaaaagaaa cattatgaaa gggaatctaa gtagtgcgtt       960
     cctattattg attgacaatc atattttgga acatatacga atttgcacag agttagaagc      1020
     ctctcgagtt ttggggaaaa cctggacaat tacgcaagaa aaattgaagg catttcttgc      1080
     aatattgtac gcacgcgggg catacgaagg aaatactttg agacttcaat acttgtggaa      1140
     taaaaaatgg ggaccatcat ttttttctag cactatgagt agacgagatt ttacagatat      1200
     tttacgatac attcggttcg ataaaagaaa tcagaggagt caacgcttgc aaacagacaa      1260
     attcgcttta gtctcagcag tttgggataa atttattgaa aacagtcaaa attgcttcaa      1320
     accgggagct tatattactg tggatgagca actttttcca acgaaggcca gatgcagatt      1380
     tactcagtat atgccaaaca aaccccataa atttggcatc aaattttggt tagcgtctga      1440
     tgtagaaaca aaatatgtgg taaatggctt tccatattta ggaaaagacg agactcgaaa      1500
     tgcatcaacc cccctaagcg aatttgtcgt aatgaaactt cttgaaccgt acaccatgaa      1560
     gggtagaact gtaacaactg ataatttttt tacaagtatt cctttggcgt tgaaattacg      1620
     atctaaaagc acttcgttac ttggaacaat acgcgcaaac aagagggaac tgccgaaaat      1680
     ttgcaaactg aaaaaagaca gcatggcacg tttctcgacg ttgttgtacc aatctaatgg      1740
     atgcacactt actgtttata agagcaaacc aaataaaaaa gtacttttac taagtacaaa      1800
     acataaaaac atcaaaattg ataaagcagc taaaaaaata cctgaaactg tattgtttta      1860
     taataaaact aaatttggcg tcgatgtgac tgatcaaatg gcacgaaaat atacggtgaa      1920
     gtctggttgc agaaggtggc cacttcaagt gtttttcaat attttagatt tagccggaat      1980
     aaatagctgg atattataca aaaacacaac aggagaaaat atctcacgga aagactttct      2040
     gtttcgatta gcagaagaac ttgcttcaga atatcagact tcaaggcaaa aaccacacga      2100
     agctgatata tcaactaccg ctggcacggt ttctgtgcgc aaatggtgtc aaataggata      2160
     ttgcaataac aataagacta caaatatttg caataaatgc aagaaaagtc tatgcggaaa      2220
     gtgtacaaaa agcaaaatct acatatgtag aaattgtgag cgataaactg taaaaattaa      2280
     gtcttttgtt atttgacaat ttccataaat ccatttttgt ataaaaatta atattgttga      2340
     attcttttta ccatttttta agagtgaata aagactggaa actcagttaa gaattttttt      2400
     tatacaccag tcatattgac tggttatggt agaaatacgt atatttaaat ggctggtaaa      2460
     tctagtg                                                                2467
//
ID   piggyBac-1_CiLe repbase;    DNA;    INV; 2391 BP.
XX
AC   .
XX
DT   14-NOV-2019 (Rel. 25.01, Created)
DT   14-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   DNA transposon from the bed bug genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_CiLe.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-2391
RA   Kojima K.K.;
RT   "DNA transposons from the bed bug genome.";
RL   Repbase Reports 20(1), 50-50 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. TTAA TSDs. 4-bp TIRs.
XX
SQ   Sequence 2391 BP; 742 A; 469 C; 521 G; 658 T; 1 other;
     ccctgagagg ccagctaaac acctttttgc ctgccattct tttacctggc ggcctaacgg        60
     gacacccctc ctagtaattt cctatttagg ggtggtgcat aggaatccct aattcattct       120
     gtcgtcaacc ttcactctgc tagcctagac ccatcctgga ttgtcgagcc gactgcgtca       180
     taaattaaaa gataagtttt ttcacgatat ttttgttgta atcgttcatt ttacttttca       240
     attcagtttt cctgactttt attctagatw tcctgctgaa atggacaaaa aaatgtatga       300
     tttttccaac cctaatgcat gttgccgaaa ttagaaaact cctcgaggat gatgcttctg       360
     atgatccagc gctggttgag gattttggcg agaaagcgat atagattctc tggacgaagt       420
     agagcaatgt gacgaggact cagaaacgga acaagaagat gaagggacat ctgagaaggt       480
     ggaagatgat tttttttctt ggaaaagata agcagacaaa gtggaccaag aagaatctca       540
     gcttcttttc gtcgggtaca acgtcacaat atcattacac accttccagg ggtaaaggga       600
     gatgctagaa atgcaaaaac gatattgcaa tgttgggaat gtttgttcac tacagaaatt       660
     ttggaattga ttgtaaaata taccaatcaa tacatagatt cagtcaaatc caaatttgcc       720
     agagagaggg atgccaagga aacagacatc attgaaatca aggcattcat tggtttatta       780
     taccttgctg gagcatacag aggaaatcgt cagagtctgg aggagctatg gggcacagaa       840
     ggagatgggg ttgagaaatt tggcctggtg atgagcataa aaagattcaa gttcctcata       900
     cgttgtattt gttttgacga tcgtacgagc tgagcacaac ggaaagaata tgatcgactt       960
     tgcccaattc gtgaaatgtt cgattgtttt gttcaaaact gccaaaaaaa actacctccc      1020
     cggagaaaat gttacaattg atgagatgct gccagggttc cgtgggaggt gtgcattcag      1080
     gcaatacatt ccctccaaac caaacaaata tggtataaag gtatttgccc ttgttgatgc      1140
     caaaatgata tacacctaca acatggagat atacgcagga aaacagcctg aagggccatt      1200
     ttttgtcagc aacaagccaa gtgaagtggt gaaacgaatc gccgaacccc tttttgagac      1260
     agggcgcaac ataaccactg ataattggtt cacagacata gatctcgtta atgatttgaa      1320
     aaaaaagagg ctttcttatg ttggcacaat taaaaaaaat aaaagacaga taccagacaa      1380
     ttttgtcaat atcagaggga gggctcaaca cagcagcttg ttcggcttca acaacggtaa      1440
     cactttggtt tcatacgttc caaagaaagg gaaaaatgtg attctcgttt catcactcca      1500
     cgaaactaat gccattgatc aaaataccgg agagcagcaa aagccagaag tgattacgtt      1560
     ttacaatacc accaaaggtg gagttgacac tgctgatcaa atgtgtgcaa cgttcagtgt      1620
     gagccggaac acaagacgct ggccgatggt catcttcttt gcctgtctga acgtagccgg      1680
     cataaattct caagtgattt cgattgcgaa taaactggaa ccgctaaaaa ggagaatctt      1740
     cctcaaaact ttgtctcatc aacttacgat tggacaacta gcccgacgaa gtctaaatac      1800
     aagtggaatg ccgactcacc tacaatcccg cttgaaaagg tttttaccac aagaaaaacc      1860
     tgaaaatacg cccaccttac ctccaaaaag acgcaaatgt ggcatgtgca tggctgaaac      1920
     aggatttaga aggatgacaa attacgaatg taaaaattgt catcaaccga tctgccttag      1980
     ccacgtaaat ccactgtgcc aagcctgtta ttcagctgca gatttcgaag attcagcgta      2040
     ggtttctgcc cgctacagcg gcaaagaatg gttgcgccac atcagactgt atactacatt      2100
     ttttccagta ttttttaata ttatgatact tggtttgatt aatttttgaa aacttgttgt      2160
     acaaaattcg caattttggt tgttttagtt taagcttcat tatattcaat aaactcgttt      2220
     gtttccatcc aatttggtgt atttgatttc cgtaaatcca agcaaaggct accttaacgg      2280
     tgttttggat taaattgatt agaggggaag ggggagggta aaacaggtag gtggcctctc      2340
     aggccgggtg cgcctggttt tgtttcattc agaggtgcgc ccgatggagg g               2391
//
ID   piggyBac-1_DAn repbase;    DNA;    INV; 2735 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   PiggyBac DNA transposon from fruit flies.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2735
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 289-289 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 14-bp TIRs. TTAA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           422..2386
FT                 /product="piggyBac-1_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MYICNIYLFVIIIMLCFMCFYIQLFGIYCLCRLCYMF
FT                 IYGTKVMLCFKWYILLYYIGIMSEKGLTPSQIESFFNSVDSEDDLDFSADD
FT                 ESDYYPNKEDFETSDDEVLENQVELPTDLNVPSKDVNDVATSSKKDLRRNL
FT                 LWRQRSLILNENQLQLLTSTALPPELMELSQPIQFFSYLFPKKVFENISNE
FT                 TNLYIHQKEPNANITFTPLDIQQFVGIVLYMSISRLPKCALYWSASIGIPT
FT                 IQNIMSQKTFETIRRHIHFNNNDNNLPLTDSRHDRLFKIRPLIQEINNNFG
FT                 KVPKEQFLCVDEQICSTKARSHMKRYNPNKPHKWGYKIYVLSGNSGFCYKF
FT                 EIDSGNENVVLLNEPDLGAASNCVVRLAREVPRHQNFRLYFDNYFNSLPLL
FT                 KYLAESGILALGTIRKNRIPNFKSMENIHLKKNPRGTSVEYVADFGGVDIS
FT                 CTSWVDNKIVSLASNYAGIVPTDTARRFNKAKKEYIQIDRPFAVAQYNSYM
FT                 GGVDLIDSIIGRYKILLRSKRWQVRIFYHLLDLTISNAWLLYKRVMKANGY
FT                 PGKVLSSSDFRLDIAEVLTKVNTKSKLGKRSSVIENELQLKKQRGPTQHVP
FT                 NQMVRQDQVGHWPIWADKRIRCKFPNCAGYSQVMCNKCGVALCFNKRNNCF
FT                 TNFHLN"
XX
SQ   Sequence 2735 BP; 920 A; 450 C; 484 G; 881 T; 0 other;
     ccctttatat ggccgtgatg catatctgca acataccgtt tgaattcaac tatttcatag        60
     tgtttataaa gaaagtgaca tgtgttagtg tgatgtcata atgcaacaag gctttttttt       120
     attagtatga cctgatccca ctctaccatg agttttgaca acataagttt acttttcccg       180
     ccaattttgt gaaacaagca cgtgagctcc gttccaaact ttcaattaca aatatttctt       240
     aaaatacaac ttatttgttt aaacaaaact gcacaattga aaaggtattt atgtttataa       300
     tgcatgtgca gccgagtttt tatgttatgg tttatgtgtt acgtgaaaat agtgagtatc       360
     gttgtgttgc agatatacat caaactgctt ttcagagata atttgtgcag tctcagtttt       420
     gatgtatata tgcaacattt atttgtttgt gattattatt atgttatgtt ttatgtgttt       480
     ttatatacaa ttatttggta tttattgtct ttgtcgtctg tgttatatgt tcatctatgg       540
     aaccaaagtt atgttatgtt tcaaatggta tatactattg tattacatag gaataatgtc       600
     agaaaaagga ttaacgcctt cgcaaataga aagttttttt aatagcgtgg atagcgagga       660
     tgatctcgac ttttctgctg atgacgaaag cgattactat cccaataaag aagattttga       720
     gacctcagat gacgaagttt tggaaaatca agttgaactc cctaccgact tgaatgttcc       780
     aagcaaggat gtcaacgatg ttgcgacttc tagcaaaaag gacctaagaa ggaatttgct       840
     atggagacaa cgcagtttga ttttgaatga gaaccaactt cagctgctca cgagcactgc       900
     gttacctccg gaactaatgg agctgtccca gcctattcaa tttttttcgt atctatttcc       960
     taaaaaagtt tttgagaata tttcgaatga aactaacctt tacattcatc aaaaagagcc      1020
     aaacgcaaat attactttta ctcctttgga tattcaacag tttgttggaa ttgtgttgta      1080
     tatgtccatt tcacgacttc caaaatgtgc cctttactgg tctgcaagta ttggaatacc      1140
     gacaattcaa aacattatgt cacaaaaaac atttgaaaca atcagacgtc acattcattt      1200
     caacaacaat gataataatc tgcctttgac tgattcccgt catgatcggc ttttcaaaat      1260
     acgaccactt attcaggaaa ttaataataa ttttggaaaa gtacctaagg aacagttttt      1320
     gtgtgtcgac gaacagattt gttcaacaaa agcaagatca catatgaaac ggtacaatcc      1380
     taacaagcct cataaatggg gatataaaat atatgtttta agcggtaatt cgggcttctg      1440
     ctataaattc gagattgatt ctggcaatga aaacgtagta ctacttaacg agccagatct      1500
     aggagcagca tcaaattgtg ttgtaagatt ggccagagaa gtccccaggc atcagaattt      1560
     tcgcctatat tttgacaatt attttaattc attacctctt ttaaagtatt tggcggaaag      1620
     cgggatctta gcgttgggta caattcgaaa gaacagaatc cctaatttca aatccatgga      1680
     gaatattcac ctaaagaaaa atcctcgcgg cacgtctgtg gagtatgtcg ctgattttgg      1740
     tggagtagac atatcttgca cctcatgggt ggataataaa atagtttcat tggcatcgaa      1800
     ctacgctgga atagttccca cagacactgc ccgccgattc aacaaggcca aaaaggaata      1860
     tatacaaatt gaccgtcctt tcgctgtagc acaatacaac agttatatgg gaggcgttga      1920
     tctgatcgac agtataatcg gaagatataa aattttattg agaagcaaac gttggcaagt      1980
     cagaatcttt tatcatttac tggaccttac aatcagcaac gcttggttgt tgtataaacg      2040
     tgttatgaag gcaaatggat atcctggaaa agttttaagt tcatcagact ttcggcttga      2100
     tatcgcagaa gtgctaacaa aagttaacac taaatcaaaa ttgggtaaac gaagttccgt      2160
     cattgaaaat gaattgcagc taaagaagca gagaggtcca actcagcatg taccaaacca      2220
     aatggtacga caggatcagg ttggacattg gccaatttgg gcagacaaaa gaataagatg      2280
     caagtttcca aactgtgcag gatattctca agtcatgtgc aacaaatgtg gagtagcttt      2340
     atgcttcaat aaaagaaata attgtttcac caattttcac ttaaattaaa cagtaattta      2400
     agcgccttat agcaaatatt ataataaaat ttacgtttta tctatgtaaa ctgagcactg      2460
     aaactattaa atatattatg aattcaaata ttttgtttaa tgcactaaaa acattacaaa      2520
     tatattcatt tatgttaaat aaatttttgg attatattaa gtttaatttt gaacccaagc      2580
     atatttgatg tatttatgca acatatcctt tatccttaat aaaagtgtaa aaaatcaaaa      2640
     atcgggaaaa cgaaaaaaaa gtgtattttt tatttttaat tatatatcta aaaacaaaaa      2700
     ccgcatcaaa atcggagttt atgccatatg aaggg                                 2735
//
ID   piggyBac-1_DBi repbase;    DNA;    INV; 1721 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   piggyBac DNA transposon from the Drosophila biarmipes genome.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1721
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 749-749 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TTAA TSDs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(222..860,808..1407)
FT                 /product="piggyBac-1_DBi_1p"
FT                 /note="transposase."
FT                 /translation="MGLTRFHNILRFLRFDDSNTRSQRKKEDKAAPIRDVW
FT                 TMLNSNLAQMYKPTANLTIDEQLYPYRGRTGFTQYIPSKPAKYGIKIWWIC
FT                 DAENAYPLQGIMYTGKTDNTREKNQGERVVKELAAPYRGSGRNICMDNFFT
FT                 TLPVAKHLLSWNITIVGTVKKINHTSLVLWEQIRHGSSTRQFFDFTKRLPC
FT                 VLTFLKKQSCHSDVYDAFRCISWKNKAVILMSTMHSDASVGDDAKRKPEII
FT                 NFYNKYKAGVDTMDQMVRRYTSQRRSSRWPMAMFFNMLDISSLATYIIYYE
FT                 NNKMITKKTTERRQFMRKLSEELSLPMIEHRTANPQIMRHFSTKIAIQSIL
FT                 GHELTETVVVNPGPETPKDKTGRKIVTGSCHVCNALPIRRRRKTRKACANC
FT                 HRPVCDEHSVNRVQCVQCH"
XX
SQ   Sequence 1721 BP; 603 A; 300 C; 330 G; 488 T; 0 other;
     cccttatgtt agtaaccaac tttaccgacg tcttttagca accgggtacc cgggtaccca        60
     attctgaata ttaaaatttt tttattttat taaaaatttt ttccaaaata tttttttctt       120
     gaaatattaa tagtaagtga aaatgtaaag aaaaaaaaat aataataaca tagagttgtg       180
     aatgacatct gaaacctatt tgggacagtc caggtacgac gatgggattg acgagattcc       240
     ataatattct gcgttttttg agattcgacg acagtaatac tcgaagtcaa cgtaaaaaag       300
     aagacaaggc agctccaatt cgtgatgtgt ggacaatgct gaattccaat ttagctcaga       360
     tgtacaaacc aactgcaaac ttgacgattg atgaacagct atatccatac cgtggccgta       420
     ctgggtttac tcaatatata ccatcgaaac cagctaagta tggtataaag atctggtgga       480
     tttgtgatgc agaaaacgca tatcctttgc aagggattat gtacactggg aaaacagata       540
     acactcgaga aaagaatcag ggtgaaagag tagtgaaaga attggcggct ccgtaccgag       600
     gtagtggtag aaatatctgc atggataact tctttactac tctacccgtt gctaaacatt       660
     tgttatcgtg gaatattact attgttggca cggtaaaaaa aataaaccat acatccctag       720
     tgttatggga gcaaataaga cacgggagca gtactcgaca gttttttgat ttcacgaaaa       780
     ggttaccatg tgttcttacg ttcctaaaaa aacaaagctg tcattctgat gtctacgatg       840
     cattcagatg catcagttgg tgatgacgct aaaagaaaac ccgaaataat aaatttttat       900
     aataaatata aagctggcgt cgacacaatg gatcaaatgg tgcggagata caccagtcaa       960
     cgacgatctt cgagatggcc aatggcaatg ttcttcaaca tgctagatat ttcttcactt      1020
     gcgacatata taatttatta tgaaaataat aaaatgatta ccaaaaaaac gacagaacgt      1080
     cgtcaattta tgcgtaagct aagtgaagaa ctatcattgc caatgattga acatcgtact      1140
     gcgaatccac aaataatgcg ccatttctca acaaagattg ccattcaaag tattttaggc      1200
     catgaactga cagaaacagt cgtggtaaat cctggtccag agactccaaa agataaaacc      1260
     ggaaggaaaa tagttacagg atcttgccat gtctgcaatg ctttgccaat aagaagacgg      1320
     cgaaagacac gtaaggcttg tgccaattgt caccgacctg tatgtgacga gcactcagtt      1380
     aatcgtgttc aatgtgttca atgtcattaa ctataaaaaa aatgtaatat tttttaaaaa      1440
     aatttagttg catgcattta tagaaattat attcaattta tttcctaggc attccactgt      1500
     gggtacccgg gtacccggtt gctaatgggg cgatggctgg agtttaagct tatttaaaaa      1560
     aaaaataaaa aataaatcaa ttaaatgaac tcacaactag ctttctttta agttaaaaaa      1620
     cgacgatttg agagcttaaa atgaaatatt gaactttctt taagttattc acacagatac      1680
     accgcggtgg gtacccgggt acccggttac taacataagg g                          1721
//
ID   piggyBac-1_DBp repbase;    DNA;    INV; 1626 BP.
XX
AC   .
XX
DT   19-DEC-2011 (Rel. 17.05, Created)
DT   23-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   piggyBac-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1626
RA   Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 618-618 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           505..1266
FT                 /product="piggyBac-1_DBp_1p"
FT                 /translation="MDNFFTTLPIAKLLLTWDLTIVGTLRKNKPYIPKEMT
FT                 ASKDRAELSTLFGFHENTTICSYVPKKNKAVILLSTMHSDLAGADNAQKKP
FT                 EIILHYNRYTAGVDTLDMMAGRYTTHRRTNRWPLAMFFNVLDISALATFVI
FT                 YKENNSMLPKKTNARRIFLLQLSEQLALPSIHERSENVQITRHYSTKLAIE
FT                 SIIGKLLPPMPTTQREHPTLDKTGRKKVAGCCHICLQQDLKRRRKTRKACR
FT                 QVECNSCYKSPAE"
XX
SQ   Sequence 1626 BP; 533 A; 309 C; 335 G; 448 T; 1 other;
     gtcaatgacc gggtaccccg gtacccacac gtagatacat tgctttaact atgttaaaac        60
     aaatattttg caatagtttt tcatttgttc atgaaaaaca aatatattgt gaatgtttta       120
     cgtattttat acgaaatatt ttgtgtaaat ataaataatt ttgaacacct gccgctacaa       180
     aaggcctatt gaaattgacg cgcaggggca ggtcgagcag gtatatagta tattcactat       240
     agtatattcg gtgaggaata acgtgtacgg tcggccttct atatataacc tacaggttta       300
     tggtaaaagc aaacgaatct ggcattagtg aaaccagcta agtatggtat caaagtgtgg       360
     tggatttgtg atgctgaaaa tgcatatcct ttgaacggca ttatttacac cgggaaatct       420
     ggcaatgtaa gagaaaaaaa tcaaggtgaa aatgttgtca aaaaattagc agcaccgtac       480
     aaaggaagtg gaaggaacat cagcatggac aattttttta cgacgttgcc gatcgctaag       540
     ctcctattga cgtgggactt gaccatcgta ggaaccctgc gaaaaaacaa gccgtacatt       600
     ccaaaggaga tgactgcgtc aaaggatcgt gcagaattat ccacactgtt cggctttcac       660
     gaaaatacga cgatttgttc gtatgtgcca aagaaaaata aagcagttat actgctttcg       720
     acgatgcact cggacctggc cggggctgac aacgcgcaaa agaaaccaga gatcattttg       780
     cactataatc ggtacacagc tggagttgat acgttggaca tgatggccgg cagatacacc       840
     acacaccgac ggacgaatag gtggcccttg gcaatgtttt tcaatgttct cgatataagc       900
     gcactcgcaa cgtttgtgat ttacaaagag aacaactcta tgctgccaaa aaagacgaac       960
     gcccgtcgta tctttttatt gcaattaagc gaacaacttg ctctcccaag tatccatgaa      1020
     cgctctgaaa acgtgcaaat aacaaggcat tactcaacga aacttgcgat tgagtccatc      1080
     atcggaaagc ttttgccgcc catgccgacg acgcagagag aacatccgac tctggataaa      1140
     acaggaagga aaaaagttgc tggttgttgc cacatttgtt tacaacaaga cctgaaaaga      1200
     cggcgaaaaa caaggaaggc gtgccggcaa gttgaatgta attcatgtta caaaagtcct      1260
     gctgaataaa ttatttgtaa ctttgaatac tttgttattg tttttcacta attatcagtt      1320
     atttaaatag ttaatcatca gtactttatt attaattaag tattaaacat tcaaaaactt      1380
     atcattcttc atcattctca atgcttttta aacgggtacc cgggtacccg gtcgtgactc      1440
     agaacactat ttgttaaaat gtcaatttga aattnaaaaa aaaatctttt ctcgttgaaa      1500
     atgtgttaat atcatgcaga aatggttgaa tgaagatgat ctaagacatg ggaccaaaat      1560
     tcttctcctg ggccgagcaa tcaagaaatt gtgacgattt gggtacccgg gtacccggtc      1620
     attgac                                                                 1626
//
ID   piggyBac-1_DEl repbase;    DNA;    INV; 2515 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2515
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4042-4042 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(416..1175,1241..2298)
FT                 /product="piggyBac-1_DEl_1p"
FT                 /translation="MRPKEKGLSNDDIERIVNFDWDVSSDEESGDEMEDIS
FT                 GMLENNLKSILERGESIEFEHIENLIDEKSIQENSVVADNCFEKVDPKTLK
FT                 WRNRPFQAPGCIWEEDSNRQIDEVKTPVEYFCSFFDNNVIDLITNQTNLYG
FT                 LQEHGIELQCTGDQIKRYIGILLYLGVIKVPQFKMAWSKEYKLSAISDAMP
FT                 RGKFEKIKQCLHFNDNTKQLKKGDLNYDKLYKIRPLLDILKKSFGKLPQEE
FT                 HQSVDEQIIAYKGQSSYKQYNPAKPHKWGLKMFTRAGTSGLVYDFTLYVGE
FT                 GTCPNFGLGISSDVVLYLSKGLPKGKPFKLYFDNWFTSVSLLVALKENGIF
FT                 ATGTIRKNRISSCRLLSDAELKKRGRGSFDTKYEVNNNLICVKWFDNKSVQ
FT                 LLSSYEDHQPVGMCKRWSPKEKVYIDVVRPAIVGSYNKGMGGVDLADMLME
FT                 LYKINHRSRKWYIRIFYWCLGTSMTNAWLLYRKNFHFLNPNQKYIPLIKFQ
FT                 MEVAHELLQCTYSTSFEKKRGRPSNMQRENSIISLGSPTSSVSSNQSKKYK
FT                 FQPNPTNSMRYDCMEHWVVFTEKGRCRLCKTGTPMSKCIKCKVHLCCNNNK
FT                 NCFMSYHT"
XX
SQ   Sequence 2515 BP; 887 A; 391 C; 494 G; 743 T; 0 other;
     cccattcgac cccgaagttg cctgtgagca atttcaaaag tttaacggct atcggtagtc        60
     ggtgcttttg tttttgtctg cttattcttc gagataacgg tgctttgatg tgtatactta       120
     gaatgtaagc aaaaaaattc tagtttgcgc atcatttgac gaaattattt ggaatgtgct       180
     ggacgtgcct cgcgtaaaaa gtgattgttg tattgtgagg tatattgaaa agaaagtgat       240
     ttacttttta attacgcatt aaaagttgaa gaatgtgagt gaaatttgtt aataaatgaa       300
     ttctttaatg catgttgtag ttcaatctaa ttgatttcta ttaaaaaaca gctgaggaat       360
     tttcaaagta ataaagttgc ttgtgagcaa ccttgggcca ttgcaccacc aaaatatgag       420
     accaaaagaa aaaggtttat caaatgatga tattgagaga attgtcaact tcgattggga       480
     tgtctccagt gacgaagaaa gtggtgatga aatggaagac atctctggaa tgttggagaa       540
     taatttaaaa agtatattgg aaaggggaga atcaatagaa tttgagcata ttgaaaattt       600
     gattgatgaa aaaagcattc aagaaaatag tgttgtggct gataattgct ttgaaaaagt       660
     tgatcccaaa acacttaagt ggagaaatag gccatttcaa gctccagggt gtatttggga       720
     agaagatagt aatcgccaaa tcgatgaagt gaagacccct gtagagtatt tctgcagctt       780
     ttttgacaat aatgttattg atttaattac aaatcaaact aatttgtatg ggttgcaaga       840
     gcacggcata gagctgcaat gtactggaga tcaaataaaa aggtatatcg gaattttatt       900
     gtacttgggt gtcataaaag tacctcaatt taaaatggct tggtcaaaag aatacaagct       960
     ttctgctata tcggatgcaa tgccacgagg aaagtttgaa aaaatcaaac aatgtttaca      1020
     tttcaacgat aatacaaaac aactaaaaaa aggtgatttg aactatgata aactgtacaa      1080
     aatacgccct ttacttgaca ttctcaaaaa aagttttggt aaactacccc aagaagaaca      1140
     tcaaagcgtt gatgagcaaa tcattgcgta caaaggtatt cagatttaaa ttttattaaa      1200
     atttaatttt aattttaatt caattttaat tttttgtcag gccaatcgtc ttataagcaa      1260
     tacaacccag ctaagcctca caaatggggt ttaaaaatgt ttacgcgcgc tggaacatct      1320
     ggattagttt atgacttcac actgtatgtt ggcgaaggca cttgcccaaa ctttggattg      1380
     ggaatatctt cagatgtggt attatactta tcaaaaggtc ttcccaaagg caaacctttc      1440
     aagctgtatt ttgacaattg gtttacgtca gttagtctct tggttgcatt gaaggaaaat      1500
     ggcatatttg caaccggaac tatccgcaaa aaccgcataa gcagctgtag acttctttca      1560
     gatgcagaat tgaaaaaacg tggaagagga tcatttgata caaaatatga agtaaacaat      1620
     aatctgatat gcgtcaaatg gtttgataat aagtcggttc aactactatc ttcgtatgaa      1680
     gaccatcagc cagttggaat gtgcaaacga tggagtccta aagaaaaagt ttacattgat      1740
     gttgtaaggc ctgctatcgt aggctcttat aacaagggta tgggaggagt agacttagcg      1800
     gacatgctta tggagctata taaaataaac caccgttcaa gaaagtggta cattagaatt      1860
     ttttattggt gcttgggaac atcaatgaca aatgcatggc tgctgtatag aaaaaatttt      1920
     cattttctaa acccaaatca aaagtatata ccgctcatca aatttcaaat ggaagttgct      1980
     catgagctgc tacaatgtac ttactctact tcatttgaaa aaaagagggg tcggccatca      2040
     aatatgcaaa gagaaaactc aataatatct ttgggttctc caactagcag tgtgtcttcc      2100
     aatcaatcca aaaaatacaa gtttcagcca aatcctacaa attctatgcg ttacgattgc      2160
     atggaacatt gggtggtatt tactgaaaaa gggcgttgca gactgtgtaa gacaggaacc      2220
     ccaatgtcaa aatgtattaa atgtaaagta cacctatgct gtaacaacaa taaaaactgt      2280
     tttatgtctt accatactta aaaattgaaa ataaacaaaa ataaccatca actaaaaatg      2340
     tattctttaa tatacactat ggcccaacgt tgcccacaag caacatccgg tagcgcccaa      2400
     actagtgggg gtggggagtt caaactttac tcaaatactg cttggcccaa tacaaacaga      2460
     atacaaaaaa aaaaatattt ttttttcgac agggaaaaag ttggggtcga aaggg           2515
//
ID   piggyBac-1_DEu repbase;    DNA;    INV; 1849 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila eugracilis: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-1849
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 759-759 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TTAA TSDs. 15-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           491..1492
FT                 /product="piggyBac-1_DEu_1p"
FT                 /note="transposase."
FT                 /translation="MERRQVNKLSALSDVEIEKFLNSIDFDIDTDGEEELE
FT                 DDLTNDVCEAALPVNEEDEEAIERVLHMSDSLLAREICVTSRGSPTPFAKL
FT                 LSPSSSIASNSPQAQKRKRKAPAEHNTAXVKESTIVECGSVSGVELSLTIW
FT                 KDKAVRLASTYAGTKPFLNETNPKSQVSRFVRSEKKHVDINCPXVIHEYNS
FT                 HMGGVDLMDGLIGRYKIPVKSNKYTNRLFTHMLDLAMVNXYILFHRINQPD
FT                 XNNAKYQLPNFRSEIAYVLCMLQTPNLPKGPGRPRQVDGKENKCTGRKTFL
FT                 PINNVRYDAVEHFPMFLSRXDKKXCKLPGCTSETQMSAVNVI"
XX
SQ   Sequence 1849 BP; 593 A; 325 C; 361 G; 562 T; 8 other;
     ccctctagtg cccaagaccg cctctagacg ggtagtgata aaagtaccgt tattttattc        60
     ttttcattcc ttttgactcg gctttgcgtt ttttctaatt cggggaagta caaaaattaa       120
     gttggttgcg tttggaatac atactagagc ttgcgcaagc tgctgtattc atttgaagta       180
     gaaaatttgt gcaactcgga cgaagtaatt attttgtaag aagtgcataa tgtaaatatt       240
     tttttaaaat attataaata gtttgctgct ggaaaaaaaa ttgtaccgtg ttgctgatag       300
     tctcaaggac gcaaaaaacg caacccacac taaaaataat aaaaatagtt ttcgttagct       360
     ttttattgca tttataaagt agcccgtcta gaggcggtct tgggacaatt cgggaaaaaa       420
     atttatgggg taagtttgaa agggaaacaa tctatgacat atttaagtac aaataattgc       480
     ttcagtagac atggaacgac gacaagtgaa taagctatca gctctttccg acgtggagat       540
     tgaaaaattt ttaaattcta ttgattttga tattgatacg gatggagaag aagaattgga       600
     ggacgatttg actaatgatg tttgcgaggc agcacttcct gttaatgagg aagatgaaga       660
     agcgattgaa agagtgctac atatgtcgga ttctttgttg gctagagaga tttgtgtaac       720
     ttcacgcgga agtcctactc cttttgcaaa attgttgtca ccctcaagtt cgattgcgtc       780
     caattcacct caagcacaga aacgcaaacg taaagcgcct gctgagcata atactgctsa       840
     tgttaaagaa agcacaatag ttgaatgtgg atctgtatca ggagtcgaac tgtctttgac       900
     gatttggaag gacaaggcag tccgacttgc ttcgacttac gcgggcacaa agcctttcct       960
     gaatgaaacg aatccaaaaa gtcaggtttc acgttttgtt cgttccgaaa aaaagcacgt      1020
     tgacataaat tgcccaawtg ttatccacga atacaacagc cacatgggcg gtgtcgactt      1080
     aatggacgga cttataggtc gatataaaat tcccgtaaag agcaacaagt atacaaatcg      1140
     actatttacg catatgcttg atttggccat ggtaaackct tacattttgt ttcaccgaat      1200
     aaaccagcca gacsctaata acgcaaaata ccaattgcca aactttcgat cagagatmgc      1260
     atatgtgctt tgtatgctac aaactccwaa tctgccaaaa ggacccgggc gccctcgaca      1320
     agttgatgga aaggaaaata aatgcacagg gaggaaaact ttccttccga ttaataatgt      1380
     acgttatgat gccgtcgagc attttccaat gtttttatca cgcgstgaca aaaaawcttg      1440
     taagcttcct ggttgtactt ccgaaactca aatgtctgcc gtaaatgtaa tataaacctg      1500
     tgcttttccc agaaaagaga cagtttctat gattttcatc acaaatagta aacgaacttt      1560
     ttgtcgagct ttgtgaattt aagtaacttt agttttaatt gttattttat ttgtttttgg      1620
     tgctcatctt aatatcattt ataataaaac atgtgatcaa aagaatttat tacctaattt      1680
     tttgttggcc tagcttccca aagccgcctc taggcggtcc aaggttatag tcatataaaa      1740
     ctcgatccga gcaaaaataa ttttttttta aaacaaacat tcacttttga tacatactga      1800
     atccaaaaaa aaattttttt ttggaaaaga aaatttgggc actagaggg                  1849
//
ID   piggyBac-1_DF repbase;    DNA;    INV; 998 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-998
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 806-806 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TTAA TSDs. 17-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 998 BP; 366 A; 172 C; 173 G; 287 T; 0 other;
     cccttatgtt agtaaccaac tttaccgacg tcttttagca accgggtacc cgggtaccca        60
     taattctgaa tatcaaaaat tttgtttatt ttattaaaaa aatttttcca aaatattttt       120
     ttcttaaaat attaatagta agtgacaata taaggaaaaa aaaaatagtg atgacgctaa       180
     aaagaaacca gaaataataa atttctataa taaatataaa actggagtcg acacaatgga       240
     ccaaatggtg cggagataca ccagtcaacg acgatcctcg agatggccaa tggcaatgtt       300
     tttcaatatg ttagacattt cttcacttgc gacatatata atttattcta aaaaaataat       360
     aaaatgataa aaaaaaacga cagaacgtcg tcaatttatg cgtaagctaa gtgaggaact       420
     agcattgccg atgattgaaa atcgtaccgc gaatccacaa ataatgcgtc acttttcaac       480
     aaagattgcc attcaaagta ttttaggcca tgcattgaca gaaacagtcg tggtaaatcc       540
     tggtccagag attccaaaag ataaaaccgg aagaaaaatg gttataggat cttgctatgt       600
     ctgcaatgct ttgccaataa gaagacggcg aaagacacgc aagtcttgtg ccaattgtcg       660
     ccaacctgta tgtgacgaac attcagtaaa tcgtgtccag tgtgttcaat gtaattaatt       720
     atattgcatg catttataaa aattttattc actttatttc ctatgctttc cactgtgggt       780
     acccgggtac ccggttacta atgaggcgat ggctgaagtt taagcataaa aaaatataat       840
     aaaaaaatat atataaatta aatgaactcg caactagctt ccttttaagt taaaaaacga       900
     cgatttaaga gcttaacatg aaatattgaa cttgctttaa gcttttcaca cagatatacc       960
     gcggggggta cccgggtacc cggttactaa cataaggg                               998
//
ID   piggyBac-1_DSuz repbase;    DNA;    INV; 2524 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2524
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 122-122 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. TTAA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(431..1190,1248..2305)
FT                 /product="piggyBac-1_DSuz_1p"
FT                 /translation="MRPKEKGLSNDDIERIINFDWDASTDEESGDEMEDIS
FT                 AVLEKNLKDIVDKGESIEIEYIDNFIEEECNQEPSAVAKSCFEKVDPKTLK
FT                 WRTRPFEAPKSIWEADDKLQVGSVMTPVEYFCTFFDIKVIDLITNQTNLYG
FT                 LQEHGIELQCTGDLIKRYIGILLYLGVIKVPQLKMAWSKELKLTAISDSMP
FT                 RGRFEKIKQCLHFNDNTKQSKKGDVNYDKLYKIRPLLDILKESFGKLPQEE
FT                 HQSVDEQIIAYKGQSSYKQYNPAKPHKWGLKMFTRAGTSGLVYNFTLYVGE
FT                 GTCPCFGLGISSDVVLYLAKGLPEGKPFKLYFDNWFTSVSLLIALKEMGIF
FT                 ATGTIRKNRISNCQLLSDAELKKRGRGSFDTKYEVNKNLACVKWFDNKSVQ
FT                 LLSSCEDHQPVGICKRWSPKDKAYIDVARPAIVASYNKGMGGVDLADMLME
FT                 LYKVNHRSRKWYMRIFYWCLGTSMTNAWLLYRKHFQMINPNQKYMPLIKFQ
FT                 MEVAHELLQCTDSTLFEKKRGRPSNAQRESSVISLGSPSSSVSSNQSKKYR
FT                 FQPDPTTSLRYDKLEHWVVFAEKGRCRLCKTGTPMSKCNKCKVHLCCNNNK
FT                 NCFISYHT"
XX
SQ   Sequence 2524 BP; 883 A; 414 C; 502 G; 722 T; 3 other;
     cccattcgac cccagcgttg cctgtgagca atttcaaatg tttaacggct aacggtaatc        60
     gtttcttcta ttattgtctg cttattcttc gacataacgg tgcttgtatg tgtgtactca       120
     taatgtgatc aaaaaaaatc gaatttgcac atcatttgac gaaattgttt tcaaaagaat       180
     agacgtgcgt cgtaaaaaaa attgttgtga aattctgaag aatatttaaw gtgactgatt       240
     tactcataaa atatatataa aaaggctaaa agtatacatg aaatattgtt aatcaatgaa       300
     taagcaaaac tttgctaaga cttaatttaa ttaattttca ataataacga ggtgacgaat       360
     tttcaaagtt gtaaagttgc ttgtgggcaa ctttgggccg ttggaataca gaatatatat       420
     acaccatagt atgagaccga aagagaaagg tttatcaaat gatgacattg agaggattat       480
     caacttcgat tgggatgcct ccactgacga agaaagtggt gatgaaatgg aagatatctc       540
     tgcagtgctg gagaagaatt taaaagatat cgtggacaaa ggagaatcaa tagaaattga       600
     atatattgac aactttatcg aagaagaatg taaccaggaa cctagtgctg tggctaagag       660
     ttgctttgaa aaagttgatc ccaagacatt aaaatggaga acaaggccat ttgaagctcc       720
     aaaaagtatt tgggaagcag acgataaact ccaagtcggt agcgtsatga cacctgtaga       780
     atatttctgc accttttttg atatcaaagt aattgacttg ataacaaatc aaacgaattt       840
     gtatgggttg caagagcacg gcatagagct tcaatgcacc ggagatctta tcaagcgata       900
     tattggaatt ttgttatact tgggagtaat aaaagttccg caactgaaaa tggcttggtc       960
     aaaagagtta aagcttactg ctatatcaga ttcaatgcca cgaggaaggt ttgaaaaaat      1020
     caaacaatgt ttacatttca acgataacac taaacaatcc aaaaaaggag atgtgaatta      1080
     tgataagctg tacaagatac gccctttact agacattctc aaagaaagtt tcggtaaact      1140
     accccaagaa gagcatcaaa gcgttgatga gcaaatcatt gcgtacaaag gtattcaaat      1200
     ttaaatttta ctagaaaata tatcttcaat ttaaattttg tttccaggtc aatcstcata      1260
     taagcaatac aatccagcta agcctcacaa atggggtctg aaaatgttta ctcgtgctgg      1320
     aacatctgga ttagtttaca actttacgct gtatgttggt gaaggcacct gcccttgttt      1380
     tggattggga atatcatcgg atgtagtatt atatttagca aaagggcttc ccgaaggcaa      1440
     acctttcaag ctttattttg acaattggtt tacgtcagtt agtcttttga ttgcattgaa      1500
     ggaaatgggc atatttgcaa ctggaactat ccgcaaaaat cgcataagca attgccaact      1560
     tctttcagat gcagaattga aaaaacgtgg aagaggatct tttgatacaa aatatgaagt      1620
     taacaaaaat cttgcatgtg taaaatggtt tgacaataag tcagttcaac ttctatcttc      1680
     gtgtgaagac catcaaccag ttgggatatg caaacgatgg agtccaaaag ataaagctta      1740
     cattgatgta gcaaggcctg ctattgtagc ttcgtataat aagggtatgg gaggagtcga      1800
     tttagcggac atgctcatgg agttgtacaa agtcaaccac cgttccagaa agtggtacat      1860
     gagaattttt tattggtgct tgggaacatc aatgacaaat gcatggctac tgtacagaaa      1920
     gcattttcaa atgataaacc cgaaccaaaa gtatatgccg cttataaaat ttcaaatgga      1980
     agttgctcat gagctgctac aatgtactga ctctactttg ttcgaaaaaa agagaggacg      2040
     gccatcaaat gcacaaaggg aaagctcagt catatccttg gggtctccat caagcagtgt      2100
     gtcttcgaat caatccaaaa aatataggtt tcagcccgat cctacaactt ctctgcgtta      2160
     cgataaattg gaacattggg tggtatttgc tgaaaaagga cgttgcagat tgtgcaagac      2220
     aggtactcca atgtcgaaat gcaataaatg taaggtccac ctttgctgca acaacaataa      2280
     aaactgtttt ataagttacc atacttaaat ttttaaaata aaagaaatta actgtcacct      2340
     aaggattttt ctttaagttt accaccactg cccaaggttg ctcacaagca acttccggta      2400
     gcgccaaaaa tagtgggcgt ggcgccttaa aaatttttct caaatacttc taaggccaat      2460
     aaaaaacgaa tagagtaaaa aaaaattttt taattctaca gggaaaaagt tggggtcgaa      2520
     aggg                                                                   2524
//
ID   piggyBac-1_DTa repbase;    DNA;    INV; 2156 BP.
XX
AC   .
XX
DT   09-SEP-2021 (Rel. 26.11, Created)
DT   09-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   piggyBac; DNA transposon; Transposable Element; autonomous;
KW   piggyBac-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2156
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (09-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A fragmental sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           675..1799
FT                 /product="piggyBac-1_DTa_1p"
FT                 /translation="TRLRSFVPYAKICRRSQQWFDSVPKYARLCVDEQMCS
FT                 TKMKHHLRQYMPNKPHKWGIKLFVLCDSFGYAYRFEIYSGAGDNVVLPGHP
FT                 DLGASANIVVRLTQTVNRFKNHIIYFDNFYTSLPLMVYLRAIGIYSLGTVR
FT                 GNRIPNCKLPNDITINKWPRGFSTEYVGSSYGVDITNVLWKDSKPVRFLST
FT                 YVGVKPFEKTNPREGTAKATRFDRKAKRHISIDCPQIVHEYNAHMGGVDLM
FT                 DGLMGRYHIRAKTRDAATRIFYHLIDMAATNAYILHRRIQTENESQDKLLA
FT                 LPDFRETLAAGLVTYTKKTYRVVQSIPKMHLHRDVQASLHPLSQDEQEIPH
FT                 SCSLHSLIDLFSMNSNVVKNQNIQYRTCGLTS"
XX
SQ   Sequence 2156 BP; 684 A; 464 C; 428 G; 580 T; 0 other;
     aaaaaattca taaaaattta taataaaccg ggctcggtat aagctgtccg acttgacaga        60
     tgagcagttg ctcaagatat ttgactcagt tccgtcggac gaggaagtgt taagctcaag       120
     tgacgacgag gacgacgact ttgatataat ggaggctctt aatactgcat tagaggatgc       180
     tgagaccata tcatttattg agagtaatgt tgaaaatgtc ccaaacaatg cacaggaagc       240
     tgagactttc cagaaaactc caaaaaggcc gcgatcacca ttaccaatca ttgaagattc       300
     ggcatctccg ccaacttctg gtgggttcaa tggagctggt aagctaaatt taattgctat       360
     gtggtatttt tgtgaataag tagttttatt tactcaggta tttaatcaat aacgaaagat       420
     tcgagtaaga ttctgtggcg agagaaatgc gcagctttaa aggatgatat taacaataag       480
     attaacactg atgagctata ccattacata ggtattttaa tcttcatgtc catttagcgc       540
     tacccaaatc tgaagagcta ctggggacaa aatgcgctcg gacctataca agcctgcatg       600
     cgccgaagca gattcgaggc aatcaaaaag tacttgtcgc tacgtgatga gcgcgaacgg       660
     gtcaaaaagg gtgaacaagg ctacgatcct ttgttccgta cgcgaaaatt tgtagacggt       720
     ctcaacaatg gtttgactcg gtgccaaagt atgcccgcct ttgtgttgac gagcaaatgt       780
     gcagcacaaa aatgaagcac cacttgcgtc agtacatgcc aaataagccg cacaagtggg       840
     gcattaaact atttgtattg tgcgattcat ttggatacgc ataccgcttt gagatctaca       900
     gcggtgcagg tgacaatgtt gtcttacctg gtcacccaga tcttggtgct tcggccaaca       960
     ttgtagtgcg cttaacacaa accgttaata gatttaagaa tcacattatt tacttcgata      1020
     atttttatac atctctgcct ttgatggttt atctaagagc gatcggtatt tatagtcttg      1080
     gcacggtgcg aggaaaccgt atccccaatt gcaagctacc aaacgatatt accatcaaca      1140
     aatggccaag gggtttttcg actgagtacg ttgggtcctc atatggtgtc gacataacca      1200
     atgtactctg gaaagacagc aagcctgttc gctttttgtc cacctatgtg ggtgtaaagc      1260
     catttgaaaa gactaaccct cgtgaaggaa ctgcaaaggc tactcgtttt gatagaaaag      1320
     ctaaacgaca catttcaatt gattgtcccc aaattgtcca tgagtataac gctcacatgg      1380
     gcggcgtaga tctcatggac ggcctaatgg gacgctatca tatcagagca aaaactcggg      1440
     atgccgcaac acgaattttt tatcacctaa ttgatatggc agccaccaac gcctatattt      1500
     tacacagacg tatccaaaca gaaaacgaaa gccaagacaa attactcgca ctcccagact      1560
     ttcgcgaaac actagcagca gggctggtga catatacaaa aaaaacttac cgggtcgtcc      1620
     aatcaatacc aaaaatgcat cttcaccgcg atgtgcaagc cagtctccat cctctcagtc      1680
     aggacgaaca agaaattccc cattcatgca gtctccactc tctcatcgac cttttcagca      1740
     tgaactcaaa cgtggtaaaa aatcaaaaca tccaatatcg gacttgcggt ttgaccagct      1800
     aaaccatttc ccacattggt tggatcgaaa cagtggaaaa agatgttgca agcactgtaa      1860
     gatttcacaa acgcaatgca tatgcacgaa atgcaatctg catttatgct gcacagcgaa      1920
     caaaaactgt tttgtagaat accataagaa aaaataaaaa aaatcttcat tacttgaaaa      1980
     tgattttttt tcactcaaag ccccaagcgt gccttcaggc ccgcttacct ttcttctcac      2040
     cttacaggtg aaccgaagat tctacgttat ttctaagcac atatttgaac ttagaaacat      2100
     tcattcactt aaaaaaaatt atttgaatac ttttttccta ttatttttta aagtag          2156
//
ID   piggyBac-1_DW repbase;    DNA;    INV; 2430 BP.
XX
AC   .
XX
DT   04-APR-2011 (Rel. 17.09, Created)
DT   04-APR-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   piggyBac-like DNA transposon: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2430
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1743-1743 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           337..2004
FT                 /product="piggyBac-1_DW_1p"
FT                 /translation="MGDQVEFIYNTRLRSRRVSADFYSRLTNALLNDXQQT
FT                 NRDEDEEGEEIDPFDTGDHDDAXYVPNDDASDIENDVXTIEPNXIFDSDED
FT                 IEDETDQVAGQCDDGFFYGKDGTKWSKNEPSAVIRTRQHNIMRFRFGPRQX
FT                 NAIPIEVFKLFFSPNISFIIVTQTNRHGKEATRKWNAENPDSKPRVWNDLT
FT                 STELDAFVGILLAAGLSHNNMQTPEVLWXSDALPIFRAAMSYRRFKQXSRY
FT                 IRFDDSRTREFRQQSDKAAPIRDIWNFLNENLANNYDAHDVVTIDEQLFPY
FT                 RGRTKFTQYIPSKPAKYGIKVWWACDAKTKYPLQGKLYTGKEGTNREVNQG
FT                 ENVLMQLSNRYSMSGRTIVADNFFVTLDAAKRLAVIGLALVGTIRSNKRCL
FT                 PSEMKKHDSRPVLSSLFGFHENVSICSYVPKKNRAVNLLSTVHYSKFCEGE
FT                 AKKPEAIMFYNANKAGVDSMDQMVSHFTTKRPTRRWTYAFFCNMLDIMALA
FT                 AYCICKEVDGYEKNSARRTFLNNLSNTXDPCKYRKPDGRYSRHKQERVSLS
FT                 FTRKRKSAP"
XX
SQ   Sequence 2430 BP; 788 A; 448 C; 478 G; 703 T; 13 other;
     accttcggac ggacacatgg gtctggccag acccctatac attttgtatg gaaatgtatg        60
     gaatatcnca catttngacc gttctacttg ctttttttgt tttcaaattg aagcatgcat       120
     gaacatgaac atatagaata catatacaca tacacatgcg tgancaagtg gaattcatnt       180
     acaacacata agcacactta gcggcaatct tacacaaaaa gtgtgtatgt acagcattta       240
     cttacttcct cttgcatcag tctacaaaaa aacgttgagc aattagcatt tgtgccacga       300
     atttttttat ttgtttactt atttcaataa actataatgg gtgaccaagt ggaatttatc       360
     tacaatacgc gattgcgtag cagacgtgtt agtgctgatt tttattcgcg attgacaaat       420
     gcattattga atgatangca acaaacaaat cgagatgaag atgaagaagg tgaagaaatt       480
     gatccatttg atactggtga ccatgatgac gcggantacg tgccgaatga tgatgcgtct       540
     gatattgaaa atgatgtgan aacaatcgag ccaaatgana tatttgatag tgatgaagat       600
     atagaagacg aaacagatca agttgctggt caatgtgatg atggcttttt ttacggcaaa       660
     gacggaacga aatggagcaa aaacgagcca tccgctgtta ttcgtacgcg tcaacacaac       720
     attatgcgtt ttcgatttgg gccaagacaa cnaaatgcca ttccaattga ggtattcaag       780
     ctgttttttt cgccaaatat ttcatttatt attgttactc aaacaaatcg tcatggaaaa       840
     gaagccactc gtaaatggaa tgcagagaat cctgattcta aacccagagt ttggaatgat       900
     ttgacaagca ctgagcttga cgcttttgtt ggaattcttt tggctgctgg cctatcacac       960
     aataatatgc aaacaccaga agtcttgtgg cnttctgatg ctttgcccat tttccgagca      1020
     gctatgtctt atcgacgatt caagcaantn tcgcgatata ttcgttttga tgacagtcgt      1080
     acccgtgaat ttcgtcaaca aagcgataaa gccgcgccca ttcgagatat atggaatttt      1140
     ttaaatgaaa acctcgccaa taactatgat gcacatgatg ttgtgactat tgacgagcaa      1200
     ctgtttccat atcgtggcag aaccaaattt acacaatata taccgtcaaa gccagcaaaa      1260
     tatggcataa aagtgtggtg ggcatgcgat gcgaaaacaa aatatccgtt gcaaggaaag      1320
     ctgtatactg gcaaagaagg aaccaatcgt gaagtgaacc aaggcgaaaa tgtgttgatg      1380
     caactttcaa accgatatag tatgagtggc cgaacgatcg ttgctgataa tttctttgta      1440
     acattggatg ctgccaaaag acttgctgtt attggtctcg cattggttgg caccatacga      1500
     tccaacaaga gatgtcttcc ttcggaaatg aaaaaacatg actctcgtcc agtgctttca      1560
     tcattgtttg gttttcatga aaacgtatcg atttgtagct acgtgccaaa aaaaaatcga      1620
     gccgtaaatt tgctttccac cgtacattat tcgaagttct gtgaaggaga ggcaaagaaa      1680
     ccagaggcaa ttatgtttta taatgctaac aaagcaggtg tcgattcaat ggatcaaatg      1740
     gtttcgcatt tcacgacaaa acgaccaaca aggcgatgga catatgcttt cttttgcaac      1800
     atgttggata tcatggcatt ggctgcttac tgtatatgta aggaagtgga tggttacgaa      1860
     aaaaacagcg cccggcgaac ttttttgaat aatctctcca acacattnga tccgtgcaaa      1920
     tatcgaaagc cggatggacg atattcacgt cacaaacaag agagagtgtc gctgtcgttt      1980
     acaaggaagc gaaaaagtgc gccgtaaaac tcgttttttt tgtactgctt gcaatcagcc      2040
     agtatgccaa caacactcaa aaacagctta tacatgcttt gtttgtgttt ctcagaatcc      2100
     gtaagaaaat tggaattata ttttccatca tacaattaca tttcattcca tttctattgt      2160
     taaaacaaca acaaattaat taaaaataaa aaacaaaagt gaacgaaaga aaaatgtctt      2220
     ttttccgtaa tccgattttt tttcgggtat atattttctt ccacatatag ctcaatgcat      2280
     ggcaaatcga ttaagaatgg taagaaatta aaatatctac ctactcggta catatatgag      2340
     ccagaatata tggttaattt ctatttaaat gcatgcaaat gcatgtaaat acataggggt      2400
     ctggccagac ccaagtgtcc gtccgaaggt                                       2430
//
ID   piggyBac-1_FoCa repbase;    DNA;    INV; 2770 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2770
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2482-2482 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TTAA TSDs. 14-bp TIRs.
XX
SQ   Sequence 2770 BP; 863 A; 552 C; 579 G; 776 T; 0 other;
     cctttaggat cccagtccac gaatgtcatg gaatttatta attttccact taaatcccat        60
     gtacacaagt gtcatggaat tgtaaaaaat cccccaaatc ccaactccat gaatgtcatg       120
     gaattttgaa atttggtcgt gtgtcccaga tacacgaatg tcatggacac acgacaaaat       180
     ccgttgaatc ccagatacac aaatacgtgt attttcaaaa aaaaaatatt ttgcgactac       240
     gaaaagtgat tttgcaggtc aattttgcca attccaagat gtcagacggt aattttgaac       300
     aaattcatat atatttaaat atcatatatg tatgtgcata tacatatatt gtatacggtg       360
     cagaaagcga ttcagaagag cattttcatg attcggggtc tgaggaggag gatagcgaca       420
     gtgcaacaga aagcgattcc gaggacgatt cagattcgtt ggatggcact gcgaatcgcg       480
     accccaccgt aagtcctaat attccaattt tatgatatat atcctcatac ttacattgta       540
     tgatctagtt cagggaaaat gagctgttcg cccctgtcgt tgaagatttt gacgagtccg       600
     aagacaaaat ccgcccggaa tttggcgttt caagaaggac gtcccctcta caaatgctgc       660
     agaaattcct cactgacgga atcattgggg atgtggtgcg agagacgaac cggtacgcag       720
     aacaggattg gacaaggcac cctgcttcat acacggattg gaaaccggtc gatttggcgc       780
     agatttggca attcttagcg attactttca tgatggggct ggtgaagaag ccgtccattc       840
     gagaatattg gagtaccgat gagttgattc aaactccgtt ctttgcaacc gttatgtctc       900
     gaaatcggta tgatagggta gcatgagata aataatggta catatgtaca tacataaaat       960
     gcatgcataa attcaacttt acagatttca aggcatcctg agagctttac atttttcaaa      1020
     caatgagaat tacacaggaa gagatcgttt ttgcaaattg ggcagcttca tgcacgatat      1080
     tttgggcaat ttctccagtg caatattacc aggcaaaaat atttgcattg atgagactct      1140
     tcttgcctac aaaggacgat tgtcattccg ccagtataat cctaagaagc gaggtcggtt      1200
     cgggatcaaa atgttcgtct tgtgcgattg tgccctcaag ttcgtcctga atatcttgcc      1260
     ataccaaggg aaatctactc ctctagctga tcggacctgg gtgaaggatc tcggatttgg      1320
     tggcgcaaca gtactcactc tactgcaagg ttatctaaac aaggctcatc gtgtcgtttt      1380
     ggacaattgg tttctgggac cgaaattagc caaaataatg ctcgccgaaa agacttatgt      1440
     gctgggcaca gtacagcgac gtcggaaagg gatgccgaag atgaggggga aactggccaa      1500
     aggacgtgtt gaaacctatt gtgatgatga aattttgatt gaacggtacg ctacaagttt      1560
     atgcattacc caagaataat aataccccaa ttataagaat aactatgtaa atagctggag      1620
     tgacaggagg gaggtatgca tgttgaacac ttttgtcccc cattccatgc gcattgcaga      1680
     gtcgtccaat ccgaggaaca ccagggagaa accagcaacg gtgctacttt acaactcaat      1740
     catgggagct gtcgacaatg ttgacaagag tatcaagccc tatcagtccg ttcggaaatc      1800
     gtacaaatgg tataagaaag tggtgtttaa tatgatcgat gtagctacct acaacagtat      1860
     gatactgtac aaccacttgc atgctgacca gagagctgta ccctacaaag attttgtcat      1920
     gaagatagtc agagaaattc aagaaaaata tccaaccctc aagaaaccaa ttggaagacc      1980
     tccaacagta ccacgaactg aaaatccagc ctttccagtt cgattgaaac cttgtcacca      2040
     tattgctgtc aaacacttag ataaaaatgg aacgccatcg tactctgact gcatttattg      2100
     caagcaccac gctgaatact ctccgaaacg caagacgacc cctttcagct gtgagatttg      2160
     caaggttcgg ctttgtattc aaggaggtga ctcttgtttc aagcggtatc acactgataa      2220
     aaagctgaag gtaatttcca taattgtata atggtaatga cgataatacc aataataatt      2280
     tttgctacat tgtagaaaat ctcaaccact ccacaaaata cgcagagtca gccccacact      2340
     caaatatcgc aaccacgact tcccgaagac attgatactc tgggcccaaa tgcagttcaa      2400
     tttattttaa gtcctaatca tgaaatcgta gtatttgatg aagatggaaa tctgctcact      2460
     ggtgctcaat tttcggacga atcatctttg ccacccattt aaattaaata tttttcataa      2520
     ttatgtttac tcatgaatcg tagtagtttt tcttaaatat cgttgcatgt gataatacga      2580
     acatattctg ttggtttttt cttgaaaata aaattcgggt ccgtgtggtc ggaaaagatt      2640
     catcagcttg ggtgcgtgag gacaatttac tgacaattat tcgggcctga aggatattta      2700
     attggaaatt aattagggac ttagtgatac gatttttctt gacaacattt tataaatggg      2760
     atcctaaagg                                                             2770
//
ID   piggyBac-1_Hmel repbase;    DNA;    INV; 3110 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3110
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           639..2402
FT                 /product="piggyBac-1_Hmel_1p"
FT                 /translation="FRLPFICFSYLNMDAKKLQKVLTKKKLEEVVQNLDNL
FT                 SDLSASDSEDDSCYVNSIHSPSDTYLNQLDDNLIEQRLEYIFGFESNEDKQ
FT                 ETPTIQAQQISTDALLTALGETSHITNSPTTDSPLLTYLDTENDECNIQLQ
FT                 DIHAFEVQQDLINVIDVPMEEFLADDEQTETNNEIRRDRSKPRVWETKSET
FT                 HDIPVFEKRFKPKANDTHKTSPLSIFERLFPDELIVIIVEQTNRYAYQKNS
FT                 NNWQPVTQQDIKAYLGVLILMGLNPLPDMELYWSSDPFYYNKEIAQVFPIT
FT                 RFKKITENLHLNDNEMEPPRGSSEYDKLYKLRPLLTELNKVYQREAFNSEV
FT                 QSIDECMVKFKGRSSLKQYMPKKPIKRGFKVWARCDAKTGYFYQFEVYTGK
FT                 GDSTENEGLGYNVVMKLCSSVPKNTLVAFDNFFTSCNLMEDLYDKKIYAVG
FT                 TVRCNRKDLPDIIKKKQPKPLRLEKHQFAAVTAEPITAIKWLDTKEVAILT
FT                 TAHQPLDTMLVKRTQKDGSRADILCPKAIASYTLSMGGVDLFDHFRSSYPI
FT                 SRKSRKYWMRLFFFFVRCIHNKCIYYLQLYTCCDPSRTPRI"
XX
SQ   Sequence 3110 BP; 1086 A; 553 C; 526 G; 943 T; 2 other;
     cccttaatca aatattggga aattatttcc cacatgccac tactgtaatt tttttgtttt        60
     atttcgtttt tggcaactct aatcagtacc aaccttaggg aaaaataatc gtacagaatt       120
     ttttaatttt attdatttgc aacattttgt cttaaggcgc gaactgtcat tgtatgtcaa       180
     tgtcaaaaac acagtttgaa atattttgtg aaaaaaccgg ttcaaacgga agatttaaaa       240
     gtttttgaag aaaaaaatct ggtaagtgca taaacacaat aatattgtaa actagacttg       300
     ttttctgaat gtttcttacg gtttttgggc tcgcagcatt gatatttgtt gtattttctt       360
     aggtttaatt atgtgggaaa ttatttccca ttgtttgttc ctgcatttga aaaataccaa       420
     tttctatata tacaataaat aatttgtctg ttgcactata taagtaccta aacaggtata       480
     gttacttata attttatcta acttacacaa cattgtcagc gagtaactca tatatggagc       540
     tttctcgaga gttatgactg cgattgagtg atttctcact tgatttttat aactattata       600
     ttttagaact atttgtactg ctcagactac caagttagtt tagacttcct tttatttgtt       660
     ttagctattt aaatatggac gctaaaaagt tacaaaaagt tctaacaaag aaaaaattgg       720
     aagaggtggt gcaaaattta gacaacttgt ctgatttatc agcctcagat tctgaagatg       780
     actcatgcta tgtcaatagc attcattctc catccgatac ttacctcaat cagcttgacg       840
     ataacctaat tgaacaacgt cttgaatata tcttcggctt cgaatcgaat gaagataaac       900
     aagaaacgcc tactatacaa gcccaacaga tttcaacgga tgccttactg acagccttag       960
     gagaaacatc tcatatcaca aactcaccaa caacagacag tcctttgcta acttacttag      1020
     atacagaaaa tgacgaatgt aatatacaac ttcaagacat tcacgcattt gaagttcagc      1080
     aagacttaat aaatgtcatt gacgttccca tggaagagtt tttggcagat gatgaacaga      1140
     ctgaaactaa caacgaaata cgcagagatc gttctaagcc aagagtatgg gagacaaaat      1200
     ccgaaaccca tgatattccc gtttttgaaa aacgttttaa acccaaggcg aatgacacgc      1260
     acaaaacttc accactaagt atttttgaac ggctttttcc tgatgaactg attgttataa      1320
     ttgtggaaca aacaaataga tacgcatatc agaaaaatag caacaattgg caaccagtaa      1380
     ctcaacaaga tattaaggcg tatctaggag ttttaatcct catgggctta aatcctctgc      1440
     cggacatgga actgtactgg tcttcagatc ctttttatta caacaaggaa attgcccagg      1500
     ttttcccaat cacaagattt aaaaaaatta cggaaaatct ccacttaaat gataatgaaa      1560
     tggaaccacc aagaggctct tctgaatacg acaaattata taaactgaga cccctcctca      1620
     cagaactgaa caaggtttat cagagagaag catttaattc tgaagtacaa tcaattgatg      1680
     aatgtatggt gaagtttaaa ggtcgaagtt cgttaaagca atatatgccg aaaaagccca      1740
     tcaagagagg atttaaagtc tgggcaaggt gcgatgcaaa aaccgggtac ttctaccaat      1800
     ttgaagttta tactggaaaa ggcgacagca cggaaaatga aggattagga tacaatgttg      1860
     tcatgaaact ctgcagtagt gtaccaaaaa atactttagt cgcatttgat aactttttta      1920
     caagttgtaa tcttatggaa gatctttatg ataaaaagat ttatgcagta gggacagtca      1980
     gatgcaatag aaaagatcta cctgatataa taaagaaaaa gcaaccaaaa ccattgcgat      2040
     tggaaaaaca tcagtttgca gctgttactg cagagccaat cacagccatt aaatggcttg      2100
     atacgaaaga agtcgctata cttacgacag cccatcagcc actagataca atgcttgtaa      2160
     agaggaccca aaaggatggt tctagagcag acattctttg cccgaaagca attgcttcgt      2220
     atacacttag catgggtgga gttgatctat tcgatcattt tagatcatcg tatccaataa      2280
     gccgtaaatc acgaaaatac tggatgagac ttttcttttt ttttgttcga tgcatccata      2340
     ataaatgcat atattaccta caactataca catgttgcga cccttcacgg acaccgagaa      2400
     tttaggttac gcttagcacg tgccctaata gataatcaca caacacggaa aggtaaagca      2460
     caaacaggtg tactttttaa aaaagataag aaagggggta ggtttggcgt gccagacgaa      2520
     attcgtttat tgaatgtggg catacacttg ccagaagaga ctaatactta caaaaggtgt      2580
     cgcttttgca gtaccaaaca gaaagaacag agaacaaaaa tacaatgttc cgcctgtgga      2640
     gtagctttgt gtgctaaaaa ttgcttcaaa acctttcaca ctgttccacc tcaataatat      2700
     tatttttctt agtaattaag tttcagttta tattaaaact atatatcatt cctaacgttg      2760
     ttgtttcatt ttataacttt attcactcat attacagtat ttttttcaat tttattatat      2820
     aagacaaaaa agaaacaagt aaagtaggag caacttacat gtatagaact tgtagtaaaa      2880
     atatatcaaa agttgagagc tattccggat aatgggaaat aatttcccac ttaattatat      2940
     tttgctttga aataccggat actgggaaat aatttcccac tgcaaaaccc ccatttcccc      3000
     cctttttata aaaaaaagga gttgtttttc gaaatctacg gcacccactt acchaaaagc      3060
     cgtgaccaga tttcaaatta ctcgaaaaat aaagtttgtt tgattaaggg                 3110
//
ID   piggyBac-1_LMi repbase;    DNA;    INV; 4725 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4725
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3327-3327 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(441..1376,1169..2179)
FT                 /product="piggyBac-1_LMi_1p"
FT                 /translation="MAHRRRCTEEEILEILTRSDSDSEGGIFSECSDDDDS
FT                 SEESRSNTPPRTSPSRAPQDSSSDSETEDESIRKRPRYNNEKFDWQKRDFS
FT                 PALHTFDDSSSGHNCQLAPDSSVLSFFMLFLSEDLLKFIALETNQFYTFTM
FT                 ANTSESVCSRLSTWKDTSFEELYSFIGLWLLMARVKKLRIKEYWSRDVLLS
FT                 TPIFGEVMSRDRFMLLLRMLHFSDNSANRGDDSLFKIRKIVDTVRVAFRSA
FT                 FNPYKNSVSMKACYCSKVAYLLNSSFLQSEVDLGSRHSCCAIVKLDTSWIS
FT                 LYTQAQQQKLKSIIWGNLEISIQKLCVDESLLLFKGRLSFKQFIPSKRSRF
FT                 GIKTFVLCDCKTGYVLDFIVYTGTTTEIEVHNLGKSGDIVATLMKPYLERG
FT                 HTVYVDNWYTSPALFLWLHNQRTAACGTIRSNRRNFPKLQKKLKRGEVEFM
FT                 ATDTMLAIKWCDKRDVFMLTTCNTTEMRDTGKTNRKTGENVMKPQCVVDYN
FT                 ANMGAVDHSDMLLSSVASVRKSVKWYKKFFFFHVVDLCVLNAHTLHRSVTG
FT                 RKMSLADFHLCLVRELVEKFSTERRRDRKGRRSGDENPLRFTGRHFPHVIP
FT                 SDQSKKRGLWRRCAVCSKQNVRRETKYECKTCNVPLCVDPCFETYHTKKNF
FT                 "
XX
SQ   Sequence 4725 BP; 1393 A; 940 C; 1022 G; 1370 T; 0 other;
     ccctttgagc gctgcagacg ggatatcccg cagcgctcca ccgggccgtg gggccgacgg        60
     acgtggtttg ccgcggcagt ggtatttcca gcgggccctg caggcggcat tcaccgcgcg       120
     gcctggccgg tacctgggcg ctaatgccgg cttacaccgc agccggtccc tttgcctgcg       180
     ggtctgcgga cgtgaacagc cgcagggctg cgtgccggcc tgtcccgagt tcttttgtcc       240
     cttccactgc accggatgga tgttccctat ttatttttct gtgccgctgc ccctgctttc       300
     tgggaaacac tctgctacgg atttcacagt tgctgttcga cattcgtgct atctggttcg       360
     tgtgactatc tgcgttctgc ttctgtggtg tcgtttagct ttctgccgtt tcgttaggat       420
     ttttagagtt cgacagagaa atggcacatc ggcgtcgttg cactgaagaa gagatactgg       480
     agatactgac aaggagtgac agtgacagtg agggtggcat cttcagtgaa tgtagtgacg       540
     atgatgattc atcagaagaa tctcgtagta atacacctcc acgtacttca cctagcagag       600
     ctccccagga cagttcttca gattctgaaa ctgaagacga atcgatccgt aaaaggccac       660
     gctataataa cgagaaattt gattggcaaa aacgtgattt tagtccagca cttcatacat       720
     ttgatgactc atcttcagga cataattgcc aactggcgcc tgattcaagc gttctatcgt       780
     ttttcatgct atttctatca gaagatctgc tgaaatttat agcacttgaa acgaaccaat       840
     tttatacgtt caccatggca aatacgtcgg aatcagtttg ttctcggcta tccacctgga       900
     aagatacaag ttttgaggaa ctgtatagct tcattggtct ttggcttctc atggctcgtg       960
     ttaaaaagtt gagaataaag gaatattggt ccagagatgt actactaagt actccaattt      1020
     ttggcgaagt tatgtcccgt gaccgtttta tgctactttt gagaatgcta cattttagtg      1080
     acaactcggc caatcgtggg gatgacagtt tgtttaaaat tcggaaaata gttgatacag      1140
     ttcgtgtggc gttccgaagt gcatttaatc catacaaaaa ctctgtgtcg atgaaagcct      1200
     gttattgttc aaaggtcgct tatcttttaa acagttcatt ccttcaaagc gaagtagatt      1260
     tgggatcaag acattcgtgt tgtgcgattg taaaactgga tacgtcttgg atttcattgt      1320
     atacacaggc acaacaacag aaattgaagt ccataatttg gggaaatctg gagatatagt      1380
     agcaacacta atgaagccat accttgaacg tggacatacc gtgtatgtcg acaactggta      1440
     cacaagtcca gccttgttcc tctggcttca caaccagaga acagcagcat gcggtactat      1500
     acgtagcaac aggcgcaatt ttccgaagct acagaagaaa ctgaaacgag gagaagttga      1560
     atttatggca actgacacaa tgcttgccat caagtggtgc gacaagagag acgtgttcat      1620
     gctgactacc tgtaacacta cagaaatgcg tgacacgggc aagacaaaca ggaagaccgg      1680
     cgagaacgta atgaagccgc aatgtgttgt cgactacaat gcaaatatgg gcgcagtaga      1740
     tcactctgac atgttactaa gctctgttgc atctgtgcgt aaatctgtta aatggtacaa      1800
     aaagtttttt ttttttcatg ttgtggacct ttgtgttttg aatgctcaca ctcttcacag      1860
     atcagtgaca gggagaaaaa tgtcattagc agattttcat ttatgtctgg tacgagaact      1920
     tgtggaaaaa ttttctacag aacggaggag agataggaaa ggaagacgct ctggtgacga      1980
     gaatcctctt cgctttactg ggaggcactt tccacatgtg attccaagtg accagtccaa      2040
     gaaacgcgga ctgtggcgta gatgtgcagt ctgctcgaaa cagaatgtgc gcagagaaac      2100
     gaagtatgaa tgcaaaacat gcaatgtacc tttgtgtgtt gacccatgtt ttgaaacata      2160
     ccacacaaag aagaactttt agcgaagttg ctacagctgg aagatgaaat taagccatca      2220
     cttctgaaaa aattgtttaa aaataataaa aaataaacaa aaatttaaaa tatttttaac      2280
     ttcgccattg ccggtccaaa gcccggatga gaaagaagga tgggaaatat aacagtgcaa      2340
     acaaagacaa aaagaaaaaa gaaacaccga attatctgag ctttaaaagc ctctccagat      2400
     gaattacttt gctgacaaac aactgatgta cgaagatgtg aaacatccaa tctgtgctga      2460
     caaacacaga ctggttgctt caaatgttcg gacataggat gcaaaaataa atacttagtg      2520
     caaatttgtg aattcttccg taacttcttg atagatatta aaccttagat attcttaatt      2580
     aaacaaaaaa ttctggcatt attatttcta gaatattctg acctgggttg cggtaaaaga      2640
     tatttattta aatggcgact agtgtcgagc gaagcccaag aagcccaaag actgtgacaa      2700
     tcacattaca gctatccata tcctatgatt ttattaactg ctaaaatgtg gttgtcacat      2760
     ttctttttta catggttgtt tgaaactggg cttcggccga aactagtcgc cgcttaaata      2820
     aatatctttt accgcaactg aggctacagt tttctagtga tatttagtaa cgggttgctg      2880
     ttctattttt ccaggacgtt ggatttgtga aaaaaattat aggcctagac attcatctcc      2940
     ttatgataag cagaaattat tcagacgtaa atataagtac ttagaaacct cgatttgatt      3000
     gatcgttgcc tgcagacaat taactgggtt tacctaatcg aaatgtattc gcaaacttgg      3060
     aaagggcgtc ttgccacaaa ttggtcagtt gcacaaactc gcccgtttct gaagcacaaa      3120
     aggtcattag gaattaaagg tgacgtttaa ttaggtagtt tagaaacttg agtatttcct      3180
     tatctaattc ttaagcaaaa gttgtacatc atcgattatt tctactgtac aataacaatt      3240
     gcgtcccgta taaaaagaat tcagtaatgt tgaatatttt gtttttaagt ttccctgcgg      3300
     ataatttgtt ggattaatgc tctcaaaata tagtggttag attcaaaagt gtgactcggc      3360
     ttccagatgc tttcgtcgaa agtagtttgc gcgagaatta ctgcgctagt acagaagaac      3420
     gtcaacgttt agtcgttacg gattctagag cgtttgaatc gcaagttgcg tacaaaaatc      3480
     agataattaa gtatcagtat gccaaataaa attcagatgt atacaaagac cttatgatga      3540
     ttcttaagaa ctaaacgcaa ataaaagaaa gcctttgatg aagagtgtca ttccatgtca      3600
     gctcacctag cactccctgt tcgaccattg cagattttgt tgaaatttta tatgaacatt      3660
     cgctgaaatt tctcttgcca acctattaag tattaagttt catgagcagc atgcatttac      3720
     agtcggagat agaacccaaa atttacactt ttctcgcgcc gtgatttacg cgttcacctt      3780
     tgattcaaat catctagcat tgttggcctg cgttggttga ccatttacac ttttttgcag      3840
     ttaaaataat gttctatcta ataagcccag tttggaaagt tttatagaac acaggttttt      3900
     gcaaaataag gttgaaaata ccgcattttt atcctttcta atatcttcaa cttttacact      3960
     taatttattt agtattggaa agcggcacat aaacgaagct tcatatatca gaaccttgta      4020
     gttagttagt ccctaagata caacgcgcca aacgttgaag ttttttgggt cgcaaatttt      4080
     agagcaactt tgtttaaact tttctgattg tatatagcac gtaaaattct tttcaatatt      4140
     attcctatga gaaccataca tttgtacacg atggccaaat ttcatatttg tcatcgaaat      4200
     atttcccgag ttataacagc tcaaagtcgc caggaattca cgctcgccct tcgcaaaatt      4260
     gcgcatggcg taaacaaatg attataactc gtccagtatt gcttcaacga atcttaaaat      4320
     ctatcattat tgattggcga catgttcgaa tgttcacata aatttttccg tcatggtaga      4380
     gcaggaaaat gttccgaaat taggcgattt gacatggaat gacccagggg ctacatgtta      4440
     gtagcgtaag gagtttcagt gtacattgtc tgtcgggcaa ttatttcaaa gttaaggaat      4500
     aagtatccag atattctgtt tatttgtaac gtcagcaagc acactgcgag actgccgcgt      4560
     cctggttcca gaaatactcc ggccagggcg aggacggcca ggcggagagc tcaggcacac      4620
     acaacaggcc gcggagacgg cggccagcgc aggtaggcgg attaggcggc cgccagggca      4680
     ggcttgactc ggccagccgg acgcgcaggt gcagcactca aaggg                      4725
//
ID   piggyBac-1_RPr repbase;    DNA;    INV; 1328 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1328
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3383-3383 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..1042
FT                 /product="piggyBac-1_RPr_1p"
FT                 /translation="FYSIKGIFFIVIATNNIVRVSKLPCRRGGCSYCPWRL
FT                 FWELSDRSLSMVSYVPKKSRAVILLSTMHSDRSIDSGTGNKNKPEIITFYN
FT                 ATKGGVDTNDQLCANYSVGRKTNRWPMAIFYHLLNVSGINAYITCKNNAQR
FT                 KNINFKMDRRTFLKSLGHQLLRNVIIRRSLSTVIPRDLKVRINIYLQEEGA
FT                 TILPIATNGEDIPNPKKRRRCHICPSTRDNKYPTFCSNCKNYICKIHSVTI
FT                 CTNCRNNCN"
XX
SQ   Sequence 1328 BP; 403 A; 239 C; 242 G; 444 T; 0 other;
     cccttcagcc gtcacgtcgg gtcatattga cccggctcat actttcaagc cttctatttt        60
     aatatctata agggctgggc tcgcgaaatt tttatttatc tctttttgac gtattttgat       120
     tgagatggca taggattttt tcccgccgcc tgctgtacgg gctcgaacca gcaattttga       180
     cccgaggtga cggcttgtgt cattcatttc ttagtgtttt gacccgaggt gattccttga       240
     gtaacatttt tctcctccaa taaaactgtt tccgaagcaa gtaattcttt aattttattc       300
     aataaaagga atttttttta ttgttattgc tactaataat attgtacgag tatcaaagtt       360
     gccttgccgc cgagggggat gtagctattg tccgtggaga ttgttctggg agttgagtga       420
     ccgaagtcta tctatggtgt cttatgtacc caaaaaatca agagcagtaa ttttgttatc       480
     tacaatgcac agcgatagat ccattgacag cggaacaggg aacaaaaata aacccgaaat       540
     tataactttt tacaatgcta ccaaaggagg ggtagacact aatgaccaac tttgtgcaaa       600
     ttattctgta ggaagaaaaa caaatagatg gcccatggcc attttttacc acttacttaa       660
     tgtgtcaggc attaatgcgt atatcacatg taaaaataat gctcaacgta aaaatataaa       720
     cttcaaaatg gaccgacgca ccttcctcaa aagtttgggg catcaattat tgcgaaacgt       780
     cattatcaga aggtcgctga gcaccgtgat cccacgggat ttgaaggtga ggatcaatat       840
     ttatctgcaa gaagaaggcg caacaattct tccgattgca acaaatggag aagacattcc       900
     taaccctaaa aaacgaagaa gatgccacat atgccctagt acaagggaca ataaatatcc       960
     tactttttgc agtaactgta aaaattacat atgtaagata cactcagtaa ctatttgcac      1020
     taactgtaga aataattgta attaattaac tgttttaatt ttaattgtaa actgtaaata      1080
     ttttctctgt ttttcattac atgctaagca gcacctcatt tagaaattac atctttatgt      1140
     tattgatttt tttttaaatt tgtatttctg ttttattaaa gtataaataa atgttttgtc      1200
     ttcgatttct attccctata acatgatatt agttagtttt tcctttttat ttaatagttt      1260
     ttaatgctgg gtcaatatga cccgaggtga cggcttatgg cacttcacat aaggtgacgg      1320
     ctcaaggg                                                               1328
//
ID   piggyBac-1_SIn repbase;    DNA;    INV; 2525 BP.
XX
AC   .
XX
DT   07-FEB-2012 (Rel. 19.02, Created)
DT   07-FEB-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   DNA transposon sequence - a consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2525
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 354-354 (2014).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           669..2360
FT                 /product="piggyBac-1_SIn_1p"
FT                 /translation="MRNLFLDELEIETNGESSDDSDVSENQDPIEPSSSNT
FT                 FVAKDGTVWNQLPPNFHQTPIHNIVRQRSGPLRSTETMSVCDTFKCIFTDE
FT                 MIDIIIRHTNKKAKHVYETYNTNNPTKTQLEWKDLTVREXNSFLGILITCG
FT                 VNRSNTQFSLDMWKTNSYPLYRASMGHNRFRSILRFIRFDDANTREERQQI
FT                 DKAAPIRDLWSMLNSNLRKYYRPTENLTIDEQLFPYRGRIKFKQYIPSKPA
FT                 KYGIKIWWICDAENYYPLTGQIYTGKSSTGREVNQGERVVKELVAPYKGSG
FT                 RNITTDNFFTTLPLAKHLLSWNLTIVGTLKKNKSYIPQEMAPSNSRQVFST
FT                 VYGFQNNVTICSYVPKKKKAVILLSTMHHTIATSGEKEKPEIVYFYNKTKS
FT                 GVDVMDHLLGQYSTQRKTNRWPLALFYNIVDIAALAAYLVYTANNYMIKKR
FT                 SNARSIFLRQLGEELSLPMIQDRSQNIQVMRHFSSRTGIECMLQKSIVIAD
FT                 ETAVASTSRVAEKDKTGRKKVVGSCYICYNKQIRKRRKTRKNCAECCKPIC
FT                 NEHCKMISKCNICYEKE"
XX
SQ   Sequence 2525 BP; 912 A; 426 C; 440 G; 744 T; 3 other;
     ccggggtacc cgggtaccca ctatagaatt tcttacattg caggtagaaa aagtctgtaa        60
     atgggttctt ggccttcctt tctggcttcc cgcgttttcg aacaatagaa tgcgcagccg       120
     ttagggctcc cattccctgt cttgcctgtc gaaacttgtt ttaacgtgtg tatagtcgcg       180
     cctggtcgtg tcgctcagtc ttaaaacgtt cgttcgagaa ggcgttagga agtttgatgc       240
     gctcgaataa ttacagcaga atatattata ttttagtatt tattttggtg ctattaaatt       300
     tggtgttata tcatatttgt tataacaaat ataaataaag tgacaacaaa acgttacaac       360
     aggtaagcgt aatatgtatg aaaaattatt aattagtntt acggaataaa aagatatatt       420
     gtttttatag attgagcatt aaaaagaaaa ttatacaata aaaagatatg gaaactattg       480
     aaaatatgtc tttttcggac gacagtaatt attccgatag cgaagatgac gaatggatac       540
     cacaatcggc gaatcaatta gaagaaattt cagatgtnga ttttaatggt atgcttaaaa       600
     atttgtctgt taaatttcca ataaattata tataatataa attatacgat atttatgtaa       660
     tattatgaat gagaaattta tttttagacg aactagaaat cgagacaaac ggagaaagca       720
     gtgatgatag cgatgttagc gaaaatcaag atccaatcga accatcatcc tcaaacactt       780
     tcgtcgctaa agatggaact gtgtggaatc aattaccacc taattttcac cagactccga       840
     tacacaacat tgttcgtcaa agaagtggac cgctccgatc aactgaaaca atgtctgttt       900
     gtgacacatt taaatgcata tttaccgacg aaatgattga cattattata agacacacga       960
     ataaaaaagc aaaacatgtt tatgagacgt acaataccaa taatcctacg aaaacgcaac      1020
     ttgaatggaa agatcttact gtacgtgagn tcaattcatt tctgggaatt ctcataacat      1080
     gtggtgtaaa tcgttcaaac acacagtttt cattagatat gtggaaaaca aattcatatc      1140
     cgttatatcg tgcaagcatg ggtcataatc gatttcgtag catcttgcga tttattcgtt      1200
     tcgatgacgc aaatacgcga gaagaacgtc agcaaatcga taaagcagca cctatacgtg      1260
     acttatggtc aatgcttaat tcaaatttac gaaaatacta tcgaccaact gaaaatttaa      1320
     caatagatga acaattattt ccatatcgag gtcgaataaa attcaaacaa tatattccat      1380
     caaaacctgc taagtacgga ataaaaattt ggtggatatg tgatgctgaa aactattatc      1440
     cgctcactgg acagatttat acaggaaaat catctacagg tcgagaagta aatcaaggtg      1500
     aaagagtagt aaaagaattg gtcgctccat acaaaggatc tggacgaaac atcacgacgg      1560
     ataatttttt tacaactctg ccacttgcaa aacatctgtt gtcatggaat ttgacgatag      1620
     taggaacttt gaaaaagaac aaatcttata tccctcaaga aatggcacca tctaattcac      1680
     gtcaagtatt ttctacagtg tacggatttc aaaacaatgt aacaatttgt tcttatgttc      1740
     cgaaaaagaa aaaagcggtt atacttttgt caacaatgca tcataccatt gcaacgtctg      1800
     gagaaaaaga aaaaccagaa attgtatatt tttataataa aacaaaatct ggcgtagatg      1860
     tcatggacca tttacttgga cagtattcta cacaaagaaa aacaaataga tggcctctcg      1920
     cattatttta taatatcgtg gacattgcag ctctcgctgc ctacctcgtt tatacggcca      1980
     ataattatat gataaagaaa aggagtaatg cacgcagcat atttctacgt caattgggag      2040
     aagaattatc tctcccaatg atacaagatc ggtcgcaaaa tattcaagta atgcgacatt      2100
     tttcttcgag gacaggcatc gaatgcatgc tacaaaaatc catcgttatt gccgacgaaa      2160
     ccgctgtggc ttccacttct cgagttgcag aaaaagataa aacgggaagg aaaaaagttg      2220
     ttggttcctg ttacatatgt tataacaaac aaattcgaaa gcgaaggaaa acaagaaaaa      2280
     attgtgccga atgttgcaaa ccaatttgca acgaacactg taaaatgata agtaaatgta      2340
     atatttgtta cgaaaaagaa taaaaactca aaaaccgtat ttatataaag cacttatatt      2400
     atttctaaca tatgtataaa tcaattgtct tttatctatc aaaaaatatc atatatgtat      2460
     ataagatatt tccctttctt gtcctttcta tataaaatgt gtatatgggt acccgggtac      2520
     cccgg                                                                  2525
//
ID   piggyBac-20_LMi repbase;    DNA;    INV; 2436 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2436
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3351-3351 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(224..1681,1597..2130)
FT                 /product="piggyBac-20_LMi_1p"
FT                 /translation="MDSAPRSSSTVRVTDPHFEDTVLKWFEDPLGSDVGSD
FT                 SDYEIQSEHNSVSEQCESEEEIVLSPVDSRVKQVIEMMKTDIWRQYHQLRI
FT                 LQEIFLVETIYRWSSKPLLRNSRVRQHNIICLPTVRPPAQVGNNPDPLTIW
FT                 NLLMTDDILNIIVKWTNVKINKEKPENEPNVWHETDLYELKAFIGLLFYSA
FT                 IFKSNREDYKSFYATDGTGRDIFRCVIXKNRFGILLTCLRFDDPATRFERK
FT                 QNNPLAPISEIFTKFIDNCQKLYNIGECACVNEMLVSFRGKCRFKMYIPKK
FT                 PCKYGLKVMCLTDARTGYLFNAYVYTGKDSDGQNLSSEEKKFQKPTQAVIR
FT                 LAKPIEQTNRNITADNWFSSIELATCLKSRGLMYVGMLKKRNKREIPKDFL
FT                 PARNKEVGSAMYAFTHNLSLVSFVPKKARAVILILSMHHDECKDGVTGKPE
FT                 IISYYNQTKGGVDVLMRSVPSIQLLDVASNGQWLCFSIFWTCPNEKCAKYS
FT                 TARRSQQWPMALFFHILDISGVNAFVLHSSYKDSAEXSRFNFLKRLENSLV
FT                 TPQMEKRVKIPHIPRELHASIHRVLGVAETRLEVVGERLEKRRTCSTCDPK
FT                 RRERRVMFAIVARSPSALSVLPKFASSAEKTFEKTKSYQQSSSEIFIFVNF
FT                 LESFLCFYHYMHSKQ"
XX
SQ   Sequence 2436 BP; 800 A; 418 C; 496 G; 719 T; 3 other;
     cccttaacgt cccaggtgcg gtctcacaga ccgcaagcgc ttattgttgg tcaattgtta        60
     atggacaggg gtggggaagg ataatacagc gttgtgtaat cgttgcttcc aacacctgca       120
     ctgttttcca ctgtcagtag ccacgttaac gcgagtcgga gcaatattat tacatcttct       180
     tttgtgctag cggtctcaga gactgcacct gggcctttgt gttatggatt cagcaccgag       240
     atcttcctct actgtgcgtg ttacagaccc tcattttgag gatactgttt tgaaatggtt       300
     tgaagaccct ttaggaagtg atgtgggatc agacagtgac tatgagattc aaagtgaaca       360
     taattcagtc tcagaacagt gtgaaagtga agaagaaatt gtattgtcac ctgtggattc       420
     tcgagtgaaa caagtaatcg aaatgatgaa gacagacata tggagacagt atcatcagct       480
     aagaattctg caagaaatat ttttggtcga aacaatttat cgttggtctt cgaagccact       540
     tttgaggaac tctcgtgtgc gtcagcataa tatcatttgt ttgccgactg tacgaccacc       600
     tgctcaagta ggtaacaatc cagatccact cactatttgg aatttgctga tgactgacga       660
     tattttgaat attatagtaa agtggactaa tgtaaaaata aacaaagaaa agcctgaaaa       720
     tgaaccaaat gtttggcatg aaacmgattt atatgaacta aaagctttta ttggtttact       780
     attttactca gctattttca aatccaacag agaagattat aaatcatttt atgccacaga       840
     tggtactgga cgtgatattt ttagatgtgt tatacmaaaa aaccggtttg gcatacttct       900
     aacatgcttg agatttgatg atcctgcaac ccgtttcgaa cgcaagcaaa acaatccttt       960
     agctccgata tcagaaattt tcacaaaatt catcgacaat tgtcagaagt tgtacaacat      1020
     tggggaatgt gcatgtgtca atgaaatgct tgtatcattt cgtggaaaat gtagattcaa      1080
     aatgtatatt ccgaagaaac catgcaagta tgggctaaaa gtcatgtgcc ttactgatgc      1140
     tcgcactggt tatctgttca atgcatatgt ttacacggga aaggattcag acggtcaaaa      1200
     tctaagttca gaggaaaaga aattccaaaa gccaactcag gctgtgatta gacttgctaa      1260
     accaattgaa cagactaacc gaaatattac cgccgataat tggtttagct caatcgagtt      1320
     agcaacatgc ctgaaatcaa gaggactaat gtatgtggga atgttgaaaa aaagaaataa      1380
     aagagaaatc ccaaaagatt tcttacctgc tagaaacaag gaagttggtt ctgcaatgta      1440
     tgcatttaca cacaatctaa gtcttgtttc atttgtgcca aaaaaggcca gagccgtgat      1500
     tcttattttg tctatgcatc atgatgaatg caaagatgga gtaacaggta aaccagaaat      1560
     aatttcttac tataatcaaa ctaaaggtgg tgttgatgtc ctaatgagaa gtgtgccaag      1620
     tattcaactg ctcgacgtag ccagcaatgg ccaatggctt tgtttttcca tattttggac      1680
     ataagtgggg tgaacgcatt tgttctccac agctcttaca aagacagtgc tgaaatsagc      1740
     cgcttcaatt ttttgaagag gctggaaaac tcactggtga caccacagat ggaaaaacga      1800
     gtgaaaattc ctcacattcc acgtgaactt catgcatcca ttcaccgtgt gttgggagtc      1860
     gcagaaacaa gactagaagt agttggagag cgattggaaa aacgtagaac atgctccacc      1920
     tgtgacccaa aaagaagaga aagacgtgtt atgtttgcca ttgttgcaag aagcccatct      1980
     gccttgagtg ttctaccaaa atttgcatcg agtgcagaga aaacatttga aaagacaaaa      2040
     agttaccaac aaagcagtag tgaaattttt atttttgtga attttttgga gagtttctta      2100
     tgtttttacc attacatgca tagtaaacaa taaaaatatg gcacaaagta aaatttaaag      2160
     gccagagtat ttgacttttt acagtgttaa taaaataatg taatgttaaa tccattttct      2220
     gcagttttat gtttgaatat atatatttca taaaattaat tttaaaatgt attcctttta      2280
     cagaatttat gtagacataa gtagcctttt gcgtaataaa ttgaattagt tcacttaaat      2340
     aacaatcaga actatttatg attatttaaa aattgcggtc tgtcagaccg cacctgggac      2400
     agagtgtgac agaaaaatga cctgggaagc taaggg                                2436
//
ID   piggyBac-21N1_LMi repbase;    DNA;    INV; 1019 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-21N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1019
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3352-3352 (2014).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 1019 BP; 292 A; 205 C; 203 G; 319 T; 0 other;
     ctctttcagt cttggtggtt agtgttacta accacctctt ttcgatcacg gtacttctat        60
     tccacgccat ctagcgataa acggttgaat tagtatgtcc gtttggactg tgcttcaaaa       120
     caaatgacag attccgggta cattgcatga atgtcagtgc ataccagttg cattgaatat       180
     agcgctaacg taccttgtct cgagtgtctg ataaaaacat caattcaacg ggtacgtaac       240
     atgttttctg taatgtattt tattgaacgt attctcatag acctatttta tgtgtgttgg       300
     catgcaggta ctgttacttt tgtgttttca ctgagtagtt acaaagggaa tgtaagcaaa       360
     ctgggaactg cagtcctctt cacgcccaga cctcgacaag ctgattctga aagacttccg       420
     gagagaagta tatcggggcc tactggcacc agcatatgtc agagacaaca caggccggat       480
     tcagtgaaca gcagccgtaa ttccgcggcc tcatctccag gacctgcatt tataaaacgc       540
     cacaaaccta cagtcccgca ggaaattcgt ctagaatcca gtcgccatca acctgaaaga       600
     agcacatcaa gaagatgctg caattgtacc actaaaatat ctcccgtgcg tactgtatgg       660
     cagtgtagta catgtaaagt gcctctttgc ttacgcaatg gtaaaacatg ttttgcagat       720
     tttcataaaa aaataatttg cttttgttag ttttgtacgt ttgtaatgat gattcgtcta       780
     ataaataacg ttcacaatca tcctagtatt atttatagca atagtcatgg tggttagcgt       840
     tagtgacaac ctcagtcctt gaaagcctga atacctatat tatgtttcct ctattgtctg       900
     tgatatttca gttgtaacag ttgcttcaat gaacagacat tgataattat gttcctattg       960
     tacaagtgtg aacagacatt ggtaattatg ttcctattgt aaaagtgtga ctgaaagag       1019
//
ID   piggyBac-21_LMi repbase;    DNA;    INV; 2549 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2549
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3353-3353 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(441..953,773..2263)
FT                 /product="piggyBac-21_LMi_1p"
FT                 /translation="MSRRTRRLGENEIGQYLFEDIPSGNESICSSDDDEEE
FT                 AANQPNPMVLGDLSGVQSAPDDSYDSDDDLPLSSRLQRTPDSTESNNVRAN
FT                 MPVMIAPKWTKDYRMDMPGAFSERVGVSDQILSMENVTPIYYFAFFGLSIY
FT                 KTFYVSKLTFTLLKPESHIHLSQQKSLMFLLPKSGCVRSNSKHGECDPHLL
FT                 FRLLWTEHLQDLLCFQTNLYATQTGKPYTPITTEELDVFIALNLVMGIKKL
FT                 PSYRDYWSSAPDLHDSYVSKFMSFNRFSWLLNNLHVNDNSVMPDRTDPNYD
FT                 KLYKIRPLLAILHNNFQKHYRPSERVAIDESMIKFKGRNSLKQYMPRKPTK
FT                 RGYKVWMMCAQSGYCLDFYIYTGKQGSNVETDLGGNVVRTFCETLKNKNHK
FT                 VYFDNYFNSYPLQVKLLEDQIFACGTVNANRKFLPTLKDDKHLQRGQHDYR
FT                 VSDTNVSLLKWKDKRSVLILSNYHDPTNVGNVKRRERDGSSTEVSCPQAVI
FT                 DYNANMNFVDKFDQLKGSYAIDRKSHKWWHRIFFHYLDCCVVNAFLIYKEL
FT                 QSSSRPDLDKLILKDFRREVYRGLLAPAYVRDKHRPDSVNSSRNSAASSPG
FT                 PAFIKRHKPTVPQEIRLESSRHQPERSTSRRCCNCSTKISPVRTVWQCSTC
FT                 KVPLCLRKGKTCFADFHKK"
XX
SQ   Sequence 2549 BP; 760 A; 501 C; 539 G; 749 T; 0 other;
     ctctttcagt cttggtggtt agtgttacta accacctctt ttcgatcacg gtacttctat        60
     tccacgccat ctagcgataa acggttgaat tagtatgtcc gtttggactg tgcttcaaaa       120
     caaatgacag attccgggta cattgcatga atgtcagtgc ataccagttg cactgaatat       180
     agcgctaacg taccttgtct cgagtgtctg ataaaaacat caatacaacg ggtacgtaac       240
     atgttttctg taatgtattt tattgaacgt attctcatag acctatttta tgtgtgttgg       300
     catgcaggta ctgttacttt tgtgttttca ctgagtagtt acaaagggaa tgtggtggtt       360
     tgcttacaaa ccaccatgac ggtggcgggt tagcttatgg atgtaacgtc atttttttct       420
     tttttcacat tctttacagt atgtcgcgcc gcacgcgccg cttaggagag aacgagattg       480
     gacaatactt gtttgaagac atcccttcag gtaacgagag catttgtagc tctgacgatg       540
     acgaagaaga ggcagcaaat cagccaaatc cgatggtgtt aggtgatttg agtggagttc       600
     aaagtgctcc tgacgacagt tatgattctg atgatgacct ccctttgtct agccggttac       660
     aacggacgcc tgattctaca gagtctaata atgtacgtgc aaacatgccg gttatgattg       720
     ctccaaaatg gacgaaggat tatagaatgg atatgcctgg tgcgttttct gaaagagtgg       780
     gtgtgtcaga tcaaattcta agcatggaga atgtgacccc catttactat ttcgccttct       840
     ttggactgag catttacaag accttttatg tttccaaact aacctttacg ctactcaaac       900
     cggaaagcca tatacaccta tcacaacaga agagcttgat gtttttattg ccttgaattt       960
     ggtgatgggt ataaaaaaat tgccgagcta ccgagattat tggtcttcag cgcctgattt      1020
     gcatgacagc tatgtttcga agttcatgag cttcaacagg ttcagttggc ttttgaataa      1080
     cttacatgtc aatgacaata gtgtaatgcc cgaccgaact gaccctaatt acgacaaact      1140
     gtataaaatt agacctctac tcgccatact gcacaacaat tttcaaaaac actacaggcc      1200
     atctgagaga gttgcaatcg atgaaagcat gatcaaattc aaaggcagaa actccctaaa      1260
     acaatacatg ccacgaaagc cgacgaaacg tggatacaag gtgtggatga tgtgtgcaca      1320
     atcaggttat tgtctagatt tttatattta cacaggcaaa cagggtagta acgttgaaac      1380
     ggacttaggt ggaaacgttg tcaggacgtt ttgcgaaacc ttgaaaaata aaaatcataa      1440
     ggtttatttt gacaattatt tcaatagtta ccctttgcag gtgaaactac ttgaggacca      1500
     gattttcgct tgtggaaccg tgaacgcaaa tagaaagttc ttgccaacgc taaaagatga      1560
     caagcattta caaagaggtc aacatgatta ccgggttagt gacacaaacg taagtttgct      1620
     gaaatggaaa gacaagagat cagtattgat tctgtcaaac taccatgatc cgacgaatgt      1680
     gggaaacgta aaacgcagag agcgtgatgg cagcagtact gaagtgtctt gtcctcaggc      1740
     cgtcatcgac tacaacgcaa acatgaactt tgtcgacaaa tttgatcagc tcaaaggaag      1800
     ctatgctatt gacagaaaat cccataagtg gtggcatagg attttctttc actatcttga      1860
     ttgttgcgtt gtcaatgctt ttttgattta taaagaactg cagtcctctt cacgcccaga      1920
     cctcgacaag ctgattctga aagacttccg gagagaagta tatcggggcc tactggcacc      1980
     agcatatgtc agagacaaac acaggccgga ttcagtgaac agcagccgta attccgcggc      2040
     ctcatctcca ggacctgcat ttataaaacg ccacaaacct acagtcccgc aggaaattcg      2100
     tctagaatcc agtcgccatc aacctgaaag aagcacatca agaagatgct gcaattgtag      2160
     cactaaaata tctcccgtgc gtactgtatg gcagtgtagt acatgtaaag tgcctctttg      2220
     cttacgcaaa ggtaaaacat gttttgcaga ttttcataaa aaataatttg tttttgttag      2280
     ttttgtacgt ttgtaatgat gattcgtcta ataaataacg ttcacaatca tcctagtatt      2340
     atttatagca atagtcatgg tggttagcgt tagtgaccac ctcagtcctt gaaagcctga      2400
     atacctatat tatgtttcct ctattgtctg tgatatttca gttgtaacag ttgcttcaat      2460
     gaacagacat tgataattat gttcctattg tacaagtgtg aacagacatt ggtaattatg      2520
     ttcctattgt aaaagtgtga ctgaaagag                                        2549
//
ID   piggyBac-22_LMi repbase;    DNA;    INV; 2448 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 20.01, Created)
DT   28-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2448
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 98-98 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(575..964,1077..1991)
FT                 /product="piggyBac-22_LMi_1p"
FT                 /translation="MQWSHRPLMQNRRVRRPQHNIVKHLPGVIGEAKNAKR
FT                 PIDCLQLFFTDDILEEIVRCTNIYIATIRSKYSRERDAADTNITEIKACLG
FT                 LLSLAGVLRTSHTNLLDLWAADGTGVEYFRLSMGINFRFLLTNAGCIQRQM
FT                 WVYTIHASKPAKYGIKMFALTDARMFYTSHLEIYCGKQVDGPYLCDNTPHA
FT                 IVKRLVKCISKSGRNVTCDNWFTSIPLAADLLENDKLTMVGTIRKNKREIP
FT                 PFMTVAKDRPVESSIFAFRKNMTLVSYKPKKDKVVLVLSTLHDDDSIDSDS
FT                 EKCKPEIITFYNETKSGVDKVDEMKCTYSVTRITRRWPFIIFSSLLNIAGI
FT                 NGYIIYKSNSDSTIPRKDYLKVLAKELLHDYMAMKVNHLSTPVNIKNRIKE
FT                 ILGLPTAEALPRPPQTTARGRCNFCDREKKQTDEIFLQCVQ"
XX
SQ   Sequence 2448 BP; 798 A; 422 C; 497 G; 731 T; 0 other;
     ccctccgtta cacgcaccac ggactgtgag tccgcagttt tatctttcca tcaacaatca        60
     gttgtaaatt caagatttcc attagtggct ttgtctacct tcctctcctt ccgtaacgaa       120
     ttattggcaa caattgaagt tagtcattat tgccagaagc agcagtctcg tgaggtgcgg       180
     agtgtcagtc cgcgtgcgtg cattcatgtg gcgcagttct atcaccagtt cttttacgat       240
     gtattgcagg taaggaggtt tcttccttta taatattaca aaaaatagag agttacgttt       300
     agaacttttt tttatttatt atctaactga catacaatta ttgccttttc attgaccaac       360
     atcgattagt gaaataagtt atacacattc tttttatttc agaagaacgg tggatgacga       420
     tcaggttttg cagtggttgg acgaagagct tggtaatgag gaatgtagtg atctggagtc       480
     aatattcgaa agtgatcact attcagatag tgaacagtcg ctggacgaaa gtgattctat       540
     cgaaaaagtt gacttgtatg ttgggaaaga cggtatgcaa tggagccatc gacctctaat       600
     gcaaaacaga agagtaagaa gacctcaaca taatattgtc aagcatttac cgggagtcat       660
     aggcgaagca aaaaatgcca agcgtccaat tgattgttta caacttttct tcacagatga       720
     cattttagaa gaaattgttc gctgtactaa tatttacatt gctaccatcc gttctaaata       780
     ttccagagaa agagatgctg cagacactaa cattacagaa atcaaagctt gtttaggact       840
     cctttccttg gcgggtgtgc tacgaacatc acacacaaat ttactagatc tctgggctgc       900
     agatggtact ggagtagagt acttcagact ttcaatgggc ataaattttc gtttcttgct       960
     gacatgacag agctcatcgg aaggaaacag aaaattagct gctgtccgat tcttgatatc      1020
     attaatgaaa actgcaagaa acattatagt ttatcagaac tagttacagt agatgaaatg      1080
     ctggatgcat tcagaggcag atgtgggttt atacaataca tgcatcaaaa ccggcaaaat      1140
     atggtataaa aatgtttgca cttacagatg caaggatgtt ctataccagc catttagaaa      1200
     tatactgtgg aaagcaagtg gatgggcctt atctctgcga taacacacct catgctattg      1260
     tcaaaagatt ggtgaaatgc atatccaaat ctggcagaaa tgtaacatgt gataattggt      1320
     tcacatcaat tccacttgcg gctgacttgt tggaaaatga caagctgaca atggttggaa      1380
     ccattcgaaa aaataaacgt gaaattcctc catttatgac agtagcaaaa gatcgtcctg      1440
     tggaatccag catttttgca tttaggaaga atatgacact ggtttcatat aaacctaaga      1500
     aagacaaggt tgttcttgta ctgtctactt tacatgatga tgacagtatt gacagtgatt      1560
     cggaaaagtg caagccagaa ataataacat tttacaacga gactaaatct ggtgtggata      1620
     aagttgatga gatgaaatgt acatactctg tgacaagaat taccagaaga tggccattta      1680
     taattttttc ttctcttcta aatattgctg gaatcaatgg atacataatt tacaagagca      1740
     attcggattc aacaattccc agaaaagact atctaaaagt tcttgccaaa gaattgttgc      1800
     atgattatat ggcaatgaag gtcaatcatc taagtactcc ggtgaacatc aagaatcgta      1860
     tcaaggaaat tttgggatta ccaacagctg aagctcttcc tagacctcca caaacaacag      1920
     ctcgaggaag atgcaacttc tgtgataggg aaaaaaaaca gaccgacgag attttcctgc      1980
     aatgtgtgca ataaatttgt atgcctggaa catgtcggtg catatctgtg cagtgagtca      2040
     gtgaaaaagg caaacaccac gagtgattta ctcgaattga cagtgaggct gtaaactata      2100
     gttttctgaa aaattttctg aactaattta cttaagataa ttgttggtta atattcattt      2160
     ggaaaaacag tggaaaaaac agaatgaacg taaatttctg tgagtacaat aaatgttctt      2220
     attggtttac gggtaaatta taagttaaaa tattttatgt acactactga tgctgaaata      2280
     cattatgttt acggattcat tgttttattt atgttattca gactcgaata tattatattt      2340
     cccaactata atctcagaat tgttcatgaa aatggtatca aacgcgatgc ggactctcag      2400
     tccgcgcgcg tgtaacggag gtaagaaaat cgcgcgtgta gcggaggg                   2448
//
ID   piggyBac-23_LMi repbase;    DNA;    INV; 2748 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 20.01, Created)
DT   27-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2748
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 99-99 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1140..1238,1183..1326,1319..1693,1653..2174,
FT                 2167..2400)
FT                 /product="piggyBac-23_LMi_1p"
FT                 /translation="MFAFGEFCFILEQIKAGCSNQRTFSGKVFQSIIRLDV
FT                 PIRELFLGKFSNPLYRATMSVSRFEALRRFIRFDDKRTRRLVTNLQTDKLA
FT                 AISYIWKIFIGQCRKVMIPKISVTVDEQLVPFRGRCGFVQYMPNKPAKYGM
FT                 KIFWMCEAETGYAIDGTVYTGREPGEPPQKNLGLSTVKTLTSGIAGTARNV
FT                 TVDNYLQVSTSRTSLEIIIYKCPLAEHLLSKNLTVVGTMRMNKREIPKEMK
FT                 PNSSRQVNSSLFAFTKEMTMVSFSPKKNKCVILLSTMHHDNSIDEQHPKRK
FT                 PEIVKFYNKTKGGVDVMDQLVRNYTCKRQTKRWPMALWCNIMDVCTLNAFI
FT                 TYKAQHPTYHEGLLHKRRLFIKELSMELIQPFMIRVFESSNPFLQKSILLD
FT                 MEKFITIPETQNNSSNSNSTVGRQKKRCSLCPASKDRKTKTVCSKCSKHVC
FT                 QDHSSVVCNNCKN"
XX
SQ   Sequence 2748 BP; 917 A; 464 C; 580 G; 786 T; 1 other;
     ccctagtatg cataccctgg gtccaatgga cccgggaaca attttaattt ctaatttgtg        60
     tattaaagac ttgaaattga gtcccaaccg ttcaggtatg ctctctggca atattcagta       120
     atacattaca gatactacta gaattgtgtg tcattagttt aagtgccact ttaattttct       180
     tctttatact acacatttac ataacctggg tccgatggac cctgtggttt atgttaaagt       240
     gtcgttaaat tagattgggt tgtaatcaat tacattttgt tggagtaccg agaatacgtt       300
     actgccacac tgcattgttg tgatcgcaga aaacgtattg ttataacttg gcatgttcaa       360
     ctgtcagaca gcatacttct gtgttgtgta agaagcaaaa tatcgcagtg ggtggttatt       420
     agtgtgtgac gctgtacaga aagactgtag gagtttgctg cacagcagta ttgtttgaca       480
     ttcgatactc attcggaaga aaggtaaggg ttattggtaa cactaaaaaa taacatgaag       540
     agccgctata ttcctacact ccataggaga agagagtact gaggttattt attcatatta       600
     ttatttttca gacaatgtca ggatctgcat ctaaaaaaga ggagcaggaa agaggatagc       660
     atacgttttt caagcccaaa ttttgaatca gttgttactc aatgggtagc tgaagatgac       720
     gatttccttt cagatataag ttctgcttcg gatgaaaacc atgaagctgt tcctcaggca       780
     gtgtcatacg actctttgga tgaagaacca cgtagtggtg gtggtgaaga agatgatgat       840
     gatggtctag ataataatat ctcaggacaa ataagcagtg aaagtgctaa cgtttatatt       900
     gctccaaatg gtatgctatg gagtaaaagg cccccagtgc aaaataaaac gcctgctcac       960
     aatgtggtga aatttatacc aggaccagca aggggacaat cacttacacc cataaagatg      1020
     cttgggattt atttattcct ctatccattg tggatgaaat tgtgagatgc acaaacctag      1080
     aggcaagaag agtttgtgtg ccaagaaaaa taatctggca tgatgtaact agagatgaaa      1140
     tgttcgcctt tggggaattt tgcttcatat tggagcagat aaaggctgga tgttccaatc      1200
     agagaacttt ttctgggaaa gttttccaat ccattatata gagctacaat gtctgtgagt      1260
     cggtttgagg cactaagaag attcattaga tttgatgaca aaagaacaag aaggctagtt      1320
     acaaactgat aagctggctg ctatatccta catatggaaa atatttatag gacagtgcag      1380
     gaaagtaatg atacctaaaa tcagtgttac cgtggatgaa caactagttc catttagagg      1440
     ccgttgtgga tttgtgcagt atatgccaaa taagcctgca aagtatggga tgaaaatatt      1500
     ctggatgtgc gaagctgaaa ctggttatgc cattgatgga actgtgtata caggaagaga      1560
     accaggtgag ccaccccaga aaaatttggg tctttcgaca gtgaagactc ttacaagcgg      1620
     tattgctggt acagccagaa atgttactgt agataattat ttacaagtgt ccactagcag      1680
     aacatctctt gagtaagaac ctaactgttg tgggaacaat gaggatgaat aaaagagaaa      1740
     ttccgaagga gatgaagcca aatagtagta ggcaagtaaa ttcaagcctg tttgcattta      1800
     cgaaagaaat gacaatggtc agtttctcgc caaagaagaa caagtgtgta atcctcctaa      1860
     gtaccatgca tcatgataac tctatagatg aacaacatcc aaaacggaaa cctgagattg      1920
     tgaaatttta taataaaact aagggtggtg ttgatgttat ggatcagcta gtgcgtaatt      1980
     acacatgcaa aagacaaacc aaacgctggc ccatggcact gtggtgcaac ataatggacg      2040
     tatgcactct aaatgctttt attacctaca aagcacaaca tcccacgtat cacgaagggc      2100
     ttttgcacaa gaggaggctt ttcatcaagg aactttccat ggagttgatc caaccattta      2160
     tgataagagt cttctaatcc ctttctgcaa aaatccatac tcctggatat ggagaagttc      2220
     attactatcc ctgaaacaca aaacaacagc agtaacagca acagcacagt tggtcgccag      2280
     aagaaaaggt gttcactgtg tcctgcttca aaggacagaa aaacaaaaac agtgtgcagt      2340
     aagtgctcaa aacatgtgtg ccaggaccat agcagtgtgg tgtgcaacaa ttgtaaaaac      2400
     tgatgtgatg ttttttgtga aatgatttat gctttgtcag tggcaaaatc acctatttga      2460
     acactgtgaa aaataatatt ggtggtgttg tatcagtttt cataatataa tctattaaaa      2520
     aattattcas ggttaaaatt atactaatta tacattttaa aagccagtaa aatcattaaa      2580
     atagccacag ctttttatat acactcatga acctcaaata aaaatattcg tgcatgataa      2640
     tatccacaaa acacttattt tcatttaaat tctcatatta gacgtaacgg gtccaatgga      2700
     cccagggtat gtaaatgtgc aaaaatatat aggtcatgca tagaaggg                   2748
//
ID   piggyBac-24_LMi repbase;    DNA;    INV; 2153 BP.
XX
AC   .
XX
DT   29-MAY-2014 (Rel. 20.01, Created)
DT   29-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2153
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 100-100 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(264..1400,1291..1935)
FT                 /product="piggyBac-24_LMi_1p"
FT                 /translation="MESVNVNDPRFEEFVRSVLEEDNDDCSDNDLFSSEED
FT                 NLEVQSEHSSVFEATTSEDGDEVEEEVSSANTIKGKNGFLWSKIPPKKGKT
FT                 QSRNIVKIPKAVNVAQNIDLEVDALEILLDTRIVDMIVAHTNEEIRRKKCT
FT                 YTDQRFLGDTDKEEICALMGLLYMSGSRKDGHLNTEEMWCGSSVYKCIMSQ
FT                 MRFKFLLNCLRFDDKTKRNKDDKFSPIRELWTAFVSNCRSSYSPHMYVTID
FT                 EQLLGFRGKCPFRVYIASKPDKYGIKIITMCDARTYYMIDAIPYVGKENRN
FT                 TNESLPTYYVKTLSRTIRGTGRNITCDNWFTSIPLADMLLKDNLTIVGTLR
FT                 KNKAEIPPSFLPNRKKKVLSSEFAFHQKKNTCLLHSGKIRRKYHQVSYPTE
FT                 RRKCFRQNLLFIRKKTLVSFTPKKGKSVVLLSTMHSAPDVDQTTNKPEIIE
FT                 FYNSTKGGVDVFDKMVHAYSVSRSTRRWPLRMFYGILDQAAINAFILFLVK
FT                 SQQKVKRKDFLKNLGFKLASPHMKRRLQKNLPRELSENIASLLGTKRTKDP
FT                 QDQESRPTKLQKQSRCHVCPRDKDRKVKVACVKCGRPACNDHRKEFA"
XX
SQ   Sequence 2153 BP; 699 A; 357 C; 468 G; 629 T; 0 other;
     ttaaccctcc gatggtaaca ggggtgatgc gtcaccccag tgatagtttg tttcttctgt        60
     tatgttggca acaatggtat tttttctggc aggcttgtgt attctttcgt cattgttgta       120
     taaatcagtc actgttctgt cgtgttgctg gtgagttgtg ttcagctgct acttgagatc       180
     gaatagttct tggggttata ggtcacccct gttaccattt tcgtaggtga aatatatttg       240
     ctacatttcg taagcttttg agtatggagt ctgtaaatgt gaatgatcca aggtttgagg       300
     agtttgtgag aagtgttttg gaggaagaca acgacgattg cagtgacaac gacttatttt       360
     caagtgagga agataatttg gaagtacaat ctgaacatag ttctgtgttt gaagctacga       420
     cgtcagaaga tggtgatgag gtggaggagg aggtatcttc agcaaacaca atcaagggta       480
     agaatggatt tttatggtct aaaataccgc ctaagaaagg gaaaacccaa agtagaaaca       540
     ttgtaaaaat tcctaaagcc gttaacgttg ctcaaaacat tgacttggag gtagatgctc       600
     tcgaaatatt attagataca agaatagtcg atatgattgt agctcataca aatgaggaga       660
     tccgaagaaa gaaatgtaca tatacagacc agaggtttct tggtgatacg gacaaggaag       720
     aaatatgtgc actaatggga ctgctttata tgtcaggtag cagaaaagat ggtcatctca       780
     acactgaaga aatgtggtgt ggctcatctg tgtacaaatg tattatgtct caaatgaggt       840
     tcaaatttct tctaaattgt ctgagatttg atgataagac caagagaaat aaggacgaca       900
     aattttcacc tattcgtgag ctctggacag cttttgttag taactgccgc tcaagttatt       960
     ctcctcatat gtatgtaaca atcgatgagc agcttttggg atttcgtggc aaatgcccat      1020
     tccgtgttta cattgcttca aaaccagata aatatggcat caaaataatc acaatgtgtg      1080
     acgccagaac atattatatg atagatgcta ttccatacgt tgggaaggag aacagaaaca      1140
     caaatgaaag tctgccaaca tactatgtga aaactctgtc cagaactatt cgtggtacag      1200
     gtcgaaatat cacttgtgac aattggttca catctatacc tttggcagac atgttgctga      1260
     aagataattt gacaattgtt ggtacgctga ggaaaaataa ggcggaaata ccaccaagtt      1320
     tcctacccaa cagaaagaag aaagtgcttt cgtcagaatt tgcttttcat cagaaaaaaa      1380
     acacttgtct ccttcactcc taaaaaagga aaatctgttg ttcttttgtc tacaatgcat      1440
     agtgctcctg atgttgacca gaccacaaat aaacctgaga tcattgaatt ttataatagt      1500
     acgaaaggag gtgtggatgt atttgacaaa atggtacatg cgtactctgt ttcgaggagt      1560
     acacgccgct ggccacttcg gatgttttat ggaatattgg accaggcagc aataaatgcg      1620
     tttattctgt tcctagtaaa atcacagcaa aaagtgaaaa ggaaggattt tctaaaaaat      1680
     cttggattta aacttgcttc accacacatg aaacggcgcc tacagaaaaa tttgccccga      1740
     gagctttcgg aaaatatagc ttcactctta ggaacaaaga gaacaaagga cccacaagac      1800
     caggaatcaa ggcccacaaa actacagaag caatcaagat gtcatgtatg ccctagagat      1860
     aaagacagaa aagtgaaagt agcttgtgta aaatgtggta ggccggcatg caatgatcat      1920
     agaaaagaat ttgcatagct tgtttctctt aaagaacaat ttcctaataa ttgtcatcca      1980
     attactgtaa agtgtttata tggtaattag aatgttaatg actttaaaga gatcaagttt      2040
     cgttctgtaa gttttgtaaa gttgtaacta tatgcacaat aaaactttgg ggtgacgagt      2100
     cacccctgtt accattgaaa ggtgtgttat tcatgttact aacggagggt taa             2153
//
ID   piggyBac-25_LMi repbase;    DNA;    INV; 1666 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 20.01, Created)
DT   09-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1666
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 101-101 (2015).
XX
DR   [1] (Consensus)
XX
CC   >85% identical to consensus. 5'-end is not covered.
XX
FH   Key           Location/Qualifiers
FT   CDS           314..727
FT                 /product="piggyBac-25_LMi_1p"
FT                 /translation="IWWACDSRNAFPLNEIYLGKQLGQQREINQGSRIVKD
FT                 LTAKWFNKGRSIVADNFFTSIPLVRELLAVKTTYVGTLRKNKIEIPKEMQP
FT                 HRSREVHSSVFGFSDSMSLVSYVPKRSSAVILVSSLHSSKTVXGDERSLN"
XX
SQ   Sequence 1666 BP; 571 A; 293 C; 329 G; 471 T; 2 other;
     gcttaaatct tctggggcct attgatcagg aagacttgag tgaacagtgg cgaggaacat        60
     ggcaggccta tttccggcaa catgcgccta aaaggtctaa gcatcacgcg tttgctcaga       120
     tttgacaaat aaggaacaag agctgcggta ggcttcatga taagttagct gcatttagag       180
     acatttggga aatgttcatt tcacgtcttt cttccatata cactcccgga tttgacataa       240
     ctgttgacga ataacttgtt gcatttaggg gaaagcgtcc atttggacaa tacatgaaaa       300
     gcaagcctgc taaatatggt gggcttgcga ttctagaaat gcttttccac tgaatgagat       360
     ttacttggga aaacagcttg gtcaacagag agaaataaat cagggttcca gaattgtaaa       420
     agatctgact gcaaaatggt tcaataaggg ccgcagtatt gtagctgaca attttttcac       480
     tagcatacct ttagtgaggg aattgctggc agtgaaaacc acatatgttg gaactctacg       540
     gaaaaacaag attgaaattc ctaaagagat gcaaccacat cgttcaagag aagtacattc       600
     gtctgttttt ggattttctg attccatgtc actagtatca tatgtaccaa aacgatcatc       660
     agcagttata cttgtctcct ctcttcactc gtcaaaaact gtgkttggtg acgaaagaag       720
     cctgaactaa tagagcatta caataaacac aagggaggtg ttgacaccat gtatcagctt       780
     gttaggcaca tacactgtga aacgcaaaac caagcgttgg cctcttgtgc tcttctacaa       840
     tatgattgat attgctggaa tcgctgcgat gattatatgg ttgtatcatc acccacaaag       900
     ctttcttcaa atcagaagag gcggcagttc ctgttgcagc taggaagaca acttgtgcat       960
     ccttacataa accgagattg cttgatagaa gatgccttca gaagggaaca aaaagtggtc      1020
     ttcttgctct tggatatgac tacgagccga gtggacacag tgcaccagtg aatatcaacc      1080
     caccaacaaa agacaaagat gtgctttttg tccgagaaac ctagacaaaa aataaaaaca      1140
     agttgtaaca agtgtggaaa atttgtatgc agttctcatt attctcggat tgtgatgtgc      1200
     ttagaatgcg ataaaaatgt ctaagtgggc tatgttgaca tgattatttc caagcacaat      1260
     aaagctggaa caagtatttc attgtattca agttttaatt tttattacaa ttgctataca      1320
     tatagaatac aaaaaaattc agttctcttt aaaagcataa agaaaatgat atgttctgaa      1380
     atgtttaata tgtaagaata aaactatgtg ttaattctga waaataaata aagttactgt      1440
     aataaaaagc aatgtaataa attttttgca taatgcatat tttgattttc ccctaaaaaa      1500
     aaatgattta aaaccaaaca caggtgtaat ataacaaatt gatgttacaa caaagaaatg      1560
     ataacaaaac tcaacaataa ataaactgct tcagtaaaat gaactggggt cttgaaagac      1620
     cccaagtgcc aagttacgta acttttccaa cgtgcccagc agaggg                     1666
//
ID   piggyBac-26_LMi repbase;    DNA;    INV; 2408 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2408
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 102-102 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           391..2061
FT                 /product="piggyBac-26_LMi_1p"
FT                 /translation="MYRQRGLSDEEVLQLLENSEVESETDFADEDDDYVPE
FT                 TSEDEDIVNEERLVEEDSRADLHQSSHLSSQQAQLAASTKMVARDGTVWET
FT                 TNFSSSGRRSAVNVLKEKGGPTAYACQRIDDSVTSAFRLIFDEAMLRLMKK
FT                 YTESNARKVLKNNNWTVSLEELEKLIAIMYARGVICTKGMSVDDIWSHSWG
FT                 PTFIKDIMPRDRFQELLRFLRFDEKSTRVERLAANKFALVSEIWGKFIENS
FT                 IRAYRPGENITIDEQLLPSKTRCRFTQFMSNKPDKYGLKFWLAVDVTTKYI
FT                 CNAFPYLGKEDMHREKQPLGEYVVLRLMEPFVNQGRNVTTDSFFTSLQLAK
FT                 KLKEKKTSLVGTMNKIRREIPDAVRKSNAEIHSTSILHHSGNPECTMTVYQ
FT                 GKKNKNVILLSTLHSEVAISKEGKKKPETVTFYNATKYGVDVVDQMTRKYT
FT                 TKVACRRWPMHVFYNILDMAAINAWVIYNIVTNKKMERKKFILQLANELKG
FT                 MKEQEHQAKEEDTGPKSTRKRRKCQISLCKGNKTSENCVKCHKAVCGKCAR
FT                 KTEIICAKCV"
XX
SQ   Sequence 2408 BP; 788 A; 449 C; 531 G; 640 T; 0 other;
     cactagaacg gcggaagggg tcaaaatgac ccctgccata cttttttcct tcattgtcat        60
     ttcagtttat ttactttcct aatgaaatca tatgactttt cctaattttt tctcctcttt       120
     atgatgatgt attagaattt aaaaagtatt tatattttct ttgacatttc tatcgatata       180
     cctagaacgg cggatggggt caatttgacc ccaatgtaat ttccttctga atatatgtaa       240
     gtaatccaac aatgtagcgg caacagtcag cagtattgca gagtagttgc ctgtcattgt       300
     tgcaacttgg cacgtgttcg ttccagtctg ccacagttta tatcgtgtca ttctggtgat       360
     agtttttgtc ctcgaaacac gcttttgaac atgtatcgtc agcgtggact ttctgatgaa       420
     gaagtgttac agctcttaga gaattccgaa gttgaatcgg aaacggactt cgctgatgaa       480
     gatgatgatt atgtacctga gacaagtgaa gatgaagaca tagtgaatga ggagcgatta       540
     gtggaagagg attcacgtgc tgatctacat cagtcatcac atctttcatc acagcaggca       600
     cagttggcag cgtctacaaa gatggttgct agggatggaa ccgtgtggga gacgaccaat       660
     ttttcatctt ctggaaggag gtcggctgtg aacgttctga aggagaaagg aggacccact       720
     gcttatgctt gtcaacgaat agacgactct gtcaccagtg ccttccgtct tatttttgac       780
     gaagcaatgc tacgtctcat gaagaaatac acagagtcaa atgcacgaaa agtactgaaa       840
     aacaataact ggactgtttc gcttgaggaa ctggagaaac tgatagccat catgtatgct       900
     cggggcgtta tttgtacaaa aggtatgtct gtggatgata tctggtcgca ctcttggggg       960
     cctactttta tcaaggacat tatgccgagg gacagatttc aggagcttct cagattcctc      1020
     cgtttcgatg aaaaatcaac ccgagttgaa cgcctggcag ccaacaaatt cgctcttgta      1080
     tctgaaattt ggggaaagtt cattgaaaac agtattcgtg cttaccgtcc tggagaaaat      1140
     ataaccatag atgagcaact attaccaagc aaaacaagat gcaggttcac tcagttcatg      1200
     tccaacaaac cagacaaata tggcctcaaa ttctggttgg ctgtcgatgt gacgacaaag      1260
     tatatatgta atgcttttcc atacctcggc aaagaggaca tgcatagaga gaagcaacca      1320
     cttggagagt acgtcgttct gcgtctcatg gagccatttg taaatcaagg aagaaatgtg      1380
     acgacagaca gcttctttac atctcttcaa cttgctaaga aactcaaaga gaagaaaact      1440
     tcattagttg gtacaatgaa caagatccgt cgtgaaatcc ctgatgcagt aaggaagtcc      1500
     aatgctgaaa tacactccac cagcatcctg caccatagcg gcaacccaga atgcaccatg      1560
     actgtatacc aaggaaagaa gaataaaaac gtcattcttc tgagtacact acattctgaa      1620
     gtagcaataa gcaaggaagg aaagaagaaa cctgaaacag taacattcta caatgcaaca      1680
     aagtatgggg tggacgtggt agatcaaatg acccgtaaat atactacaaa ggttgcatgt      1740
     aggagatggc caatgcatgt cttttacaac atcttggaca tggcggcaat aaatgcatgg      1800
     gtcatttaca acatagtaac aaacaagaaa atggaaagga agaagttcat acttcagctg      1860
     gctaatgaac tcaagggaat gaaagagcaa gaacatcagg caaaggaaga ggatactgga      1920
     ccgaaatcaa ctagaaagcg gaggaagtgc caaatcagcc tctgcaaagg caacaagacc      1980
     agcgaaaact gtgtaaagtg ccacaaagcc gtgtgcggaa aatgtgcgcg taaaacagaa      2040
     atcatatgtg ctaagtgcgt ctagcagatt ccagtaactt gagagaaaag tgatacaaag      2100
     gtgtgtgtag accacgtacg agagtaatat ggaccaagta tactaaatgt gtctacaagt      2160
     ttatacaaat aggaaacttg ttagcagtag cagcaataaa tttgtaagat attttgctgt      2220
     tgaaataaat aattattgat tattattaat tatggtgttt aataattatt gtccctgcta      2280
     gagaaaaggt gtggattaac aaaaaaaaaa aacacttatt taagtctaat atgaaaatat      2340
     tttatgtggg ggtcaaaatg acccctttcc gccgttttag gaatgtcaga aactccgccg      2400
     ttctagtg                                                               2408
//
ID   piggyBac-27_LMi repbase;    DNA;    INV; 2569 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2569
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 103-103 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           299..2053
FT                 /product="piggyBac-27_LMi_1p"
FT                 /translation="MRILYFRARKRLTSEELEWFLNEDPDFLKDVGSMSDD
FT                 DTDDEEEVIAQSDHNTESEQEYEFDENEDSNCQSGCTGDWFVGRDKTTMWM
FT                 KVVSTATSKARSKNIVKTFPGPKAIARDVTTEISGFSKIISMEMIDIIVHY
FT                 TNKYIQLIPDYQRERDKKETTRTEILALLGLLYLFGIKKANHTNVMEMWNT
FT                 DGSGIEIARAVMSYRRFLFLLRCIRFDDKTTRAERRKFDKLAAVRFILEEF
FT                 VTNCKSTYNLSEFVTIDEKLQAFRGRCGFVQYIPNKPAKYGIKIFALCDAK
FT                 TFFTSNLEVYCGKQPEGPYAVSNSASEIVHRLVSHIEGSNRNITMDNWYTS
FT                 CTLAISLLQKKLTCIGTLRKNKREIPLEFLPRKDRAPGSSLFGYNKDMTLV
FT                 SYVPKKNKAVLLLSTMHDSGTIDEDSCKPDIVLDYNATKGGVDTVDQMCGT
FT                 YSVARITRRWPLVIFFALMDIAGINAQILFYSNGQNHKVSRRIFLKNLAYD
FT                 LMKAHLVERAKIPSLPKDISLFLQRYQTTSEQLVQPSSNKRGRCIICGRAK
FT                 NVNTTIKCDSCKSFVCRKHVIISYSCEKCHVATTDSED"
XX
SQ   Sequence 2569 BP; 823 A; 432 C; 557 G; 757 T; 0 other;
     ccctcgagcg gtcgcgctgg cgcactgagt gcgccatagt taaataaaca tggttttcgt        60
     tatgttggta acaatggaga cgtttgaaac tctagctatt cctccactgt tatcctcact       120
     attgttgtgt gcagtctggt aattgtcggt gctcaagaaa attcttaaca ggagaatttg       180
     tgaagcgctg tcataactgg cgcactcagt gcgccgtgcg actggtcatg taagtatttt       240
     tttactttct caaacgtagt gttgtatttc agttacgtta ttcctatggt ccgtgttcat       300
     gagaatactt tattttaggg caaggaagcg tttaaccagc gaggaactcg agtggttctt       360
     gaatgaagat ccagattttt tgaaagatgt aggcagtatg tcggatgatg acactgatga       420
     tgaagaagag gtaattgctc aaagtgacca taacactgaa agtgaacaag agtacgagtt       480
     tgatgaaaat gaagacagta actgtcagtc aggttgtact ggtgattggt tcgtgggaag       540
     ggacaaaaca actatgtgga tgaaagtagt tagcacagcc acaagcaaag ccagaagtaa       600
     aaatattgta aaaacatttc caggaccaaa ggctattgct agggatgtaa caaccgagat       660
     ttctggattc agtaagataa ttagcatgga aatgattgat ataattgtac attacacaaa       720
     caaatacatt cagctcatac ctgattatca aagagaaaga gataaaaaag aaacgacgag       780
     aactgaaata ctggcactac ttggtttact ttatcttttc ggaataaaga aagctaatca       840
     tacgaatgta atggagatgt ggaataccga tggatcagga atcgaaattg caagagctgt       900
     gatgagctac aggcgattcc tgttcttgct acgttgtatt cgttttgatg ataaaacaac       960
     tagagcagag agaagaaaat ttgataagtt ggctgcagta cgcttcattt tggaagagtt      1020
     tgtcaccaat tgtaaaagta cgtacaatct tagtgagttt gtaaccattg atgaaaaact      1080
     tcaagctttt cggggacgtt gtggatttgt acaatatatt cccaacaaac ctgccaaata      1140
     tggcatcaag atattcgcac tttgtgacgc gaaaacattt tttacaagca acctcgaggt      1200
     atattgtgga aagcaacctg aaggacctta cgcagtctcc aattcagctt cagaaatagt      1260
     tcacaggcta gtgagtcata tagagggatc caacagaaat ataacaatgg acaattggta      1320
     cacaagttgt accttggcca tatcactatt acagaaaaag cttacatgta ttgggacact      1380
     gagaaaaaat aaacgagaaa ttcccttgga atttttgcct aggaaagatc gagcaccagg      1440
     ttcgtccctt ttcgggtata ataaagatat gacattggtt tcgtatgtgc caaagaagaa      1500
     caaggcggtt ctgttgctgt caactatgca tgattcaggt actattgatg aagattcatg      1560
     taagcctgat attgtgttag attataatgc cacgaagggg ggcgttgata cagtcgacca      1620
     gatgtgcggc acatattctg tggctcgtat tacgagaaga tggcccttgg taatcttttt      1680
     cgctctaatg gacattgcgg gcatcaacgc ccagatccta ttttattcaa atggacaaaa      1740
     tcataaggtg tcaagaagga tttttctaaa gaacttggct tatgatctca tgaaagcaca      1800
     tctagtagaa agggccaaaa ttccaagcct tcctaaggat atttcgctgt tccttcaaag      1860
     gtaccagaca acatctgagc aacttgtgca gccttcttct aacaaacgag gacggtgtat      1920
     tatttgtgga agagccaaga atgttaacac aacaataaag tgtgattcat gtaagagttt      1980
     tgtttgcagg aagcatgtga ttattagtta ctcgtgtgaa aagtgtcatg ttgcaactac      2040
     agactcagaa gactagagat atgatccttg acctctctga aattactgag ttgggctgtc      2100
     tgtaagctgt tacaacaaca tttcagtaga cattcagtac gaacatattt gttttcaaag      2160
     ctgatagtaa aacataatct tttgtcagtt aaattgtatg atttaaattc ttggattttc      2220
     atctacgttt ataataagaa gtgccattaa ctgtcacatt aaataatgaa cctttttttt      2280
     gcaatgaaag tgataaatat tatatacata tttcttgatt agacatgtag tatttggaat      2340
     tgtggtgtcg aaataaattc gtattaatta gccaaaaatg tgtaatattt cgatactatt      2400
     aatacctgag tgagtgatag tacatctacc ttttagaaaa ttaactataa acattagtac      2460
     tgtcatgagt tcatgtgaaa agtgtaatag aactgagtca acgtacgtgg cgcactcagt      2520
     gcgccgcgcg actgctcctg caccatgaaa atgcgcgact gctctaggg                  2569
//
ID   piggyBac-28_LMi repbase;    DNA;    INV; 2570 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2570
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 104-104 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(406..618,597..734,673..1479,1555..2145)
FT                 /product="piggyBac-28_LMi_1p"
FT                 /translation="MARRSPPLTDAQVFALLHDIPDDMSEAECDLDEEDLE
FT                 EEAADEDYCEPNDHFQSSDSDDDDDDDSNVVHPGFKCCSSRLVGIMIPIIF
FT                 MSSFNCRIKFIIYIRNILLFYYSSRKCKTNSLFIFEIFCCSITAAENVKRK
FT                 ARYQRGRIKSSLPRQRNMLLGTDGITEWTVAEFGKTTSGRLACHNILKENP
FT                 GATPYAKRYISDDSVASAWRLFIDESILKHIKLCTEMEARRVLTNELWSLS
FT                 LEKLEAFIALLYARGVLGANSTELDELWSKKWGPPFFSDTMGRNSFREILR
FT                 FLRFDTRNTRSERLKTDKFALVSQVWKKFIENCQLTYIPGENLTADEQLFP
FT                 SKTRCPFLQYMPNKPGKFGIRFWLLVDVEQILCNGFPYLGKTIHNAVKTMK
FT                 ARLYDSALLKHSDGTLTVYQGKRNKNVLLYSTLHSEVELQASAKRIPETVD
FT                 FYNNTKYGVDVVDQMARKYTVRAGTRRWPVHVFYNILDLAAINSWIIFKKV
FT                 TGKKITRRNYILKLAEELRMGYLGSKSKAAGTEAEFGEPVEANKMRRQCQM
FT                 KKCRNKTSYLCKECKRRVCGSCSKDITKEVVCSSCY"
XX
SQ   Sequence 2570 BP; 832 A; 449 C; 558 G; 731 T; 0 other;
     cactagaacc gccacagcgg tcaaaatgac cgctataaat tttcaaaacg ttattgtgac        60
     tgtagttttt gtagtattgc tccgagcttc agtggcttta ccgggttacc agtcagaatg       120
     atccatacta aaaataattg ttttttgaca attagatacg tcgttgttaa tgagtatacc       180
     taaaaccgcc agtgcggtca taatgaccgc tgtattgatt atcgtcttta aatgtgtttt       240
     gcgtatcctg tttcctaatt gttgtgagat taaatcggct attattattc tctgaacttc       300
     agtaatatgc acaacaatga aactcaatac cttatttacg tccattgttt cccactgcgc       360
     ctccagtagt gttgtcattc gtcagcatgt cacagcacgg taatcatggc tcgcaggtca       420
     ccgccgctta ccgatgcaca agtgttcgct ctgttgcatg atattccaga tgatatgtct       480
     gaagcagaat gtgatctaga tgaagaggac ctagaggaag aagctgcaga cgaagattac       540
     tgcgaaccaa atgaccattt tcaaagcagt gattcagatg atgatgatga cgatgattca       600
     aatgttgttc atccaggtta gttggaataa tgatacccat tattttcatg tcatcattca       660
     actgtcgtat aaaattcatt atttatattc gaaatattct gttgttctat tacagcagca       720
     gaaaatgtaa aacgtaaagc aagatatcag aggggacgaa tcaaatcaag cctcccaaga       780
     caacgaaata tgttactagg cacagatggg ataacggagt ggactgtagc ggagtttggg       840
     aagaccacat caggcagact ggcatgccat aacatcttga aagaaaatcc aggagctact       900
     ccatacgcaa agcggtacat ttctgatgac agtgtagcga gtgcatggcg cctttttatt       960
     gatgaatcaa tattgaaaca tataaaactc tgtactgaaa tggaagctag acgtgttcta      1020
     acaaatgaat tgtggagtct aagtttggaa aaactggagg ccttcattgc cttattgtat      1080
     gctcgtggtg ttcttggagc caacagtacc gaacttgatg aactgtggtc taaaaagtgg      1140
     gggccaccat tcttcagtga cacaatgggg aggaattctt ttcgagaaat tcttagattt      1200
     ttgaggtttg acactaggaa caccagatca gaacgcttga agacagataa atttgcatta      1260
     gtatcacagg tttggaagaa atttatagaa aattgtcaat tgacgtatat tccaggtgaa      1320
     aatctgactg ctgatgagca gcttttccca agcaaaacaa ggtgtccatt cttacagtat      1380
     atgcccaaca aaccaggtaa atttggtata aggttttggc ttcttgtgga cgttgaacaa      1440
     attttgtgca atgggtttcc atatctagga aaaacgatct gagactcttc ccgaaagtgt      1500
     aataatgaaa ttgacgagcc gtttcaaaag aaggggcgaa acgtaacaac atagcacaat      1560
     gctgtgaaga ctatgaaagc tcgtctttac gactcggctc tcttgaaaca tagtgatggc      1620
     actcttacgg tgtatcaagg taaacgaaac aagaatgtcc ttttatatag cactctgcac      1680
     tcagaagttg aacttcaagc tagtgccaaa agaattccgg aaacagtaga cttctacaac      1740
     aatacaaaat atggtgttga tgttgtggac caaatggcaa gaaaatacac tgttcgagct      1800
     ggtacacgaa gatggccagt tcatgtattt tataatatcc ttgacttggc agctatcaat      1860
     tcctggatca ttttcaagaa agtgacaggg aagaagatca ctcgccgaaa ctacatcctg      1920
     aagctagcag aggagcttcg tatggggtac ttgggctcaa aatctaaggc tgcgggaaca      1980
     gaagcagaat ttggagagcc tgtggaagca aataaaatga ggaggcaatg ccaaatgaag      2040
     aaatgcagga ataagacgag ttatttatgc aaagagtgca aacggcgagt atgtggttct      2100
     tgctcaaagg acataacaaa ggaagtggtc tgtagttcct gttactaaac gtcaacgtgt      2160
     cgaaatactc tgaataaaaa gtaagacagt gttttacaaa tgtgttgtgg tgcgtaggtt      2220
     tggcaaagtc gctcatgact ctaattccac aaaataaagt gttacagaaa tgtattttat      2280
     gataatgtga acttataaac tatgtcacct tcagtgatga aataatctga ataaaaggtg      2340
     tgtttaatag ttggataact tcgtttctaa aaaaactaat aaaaaaaaaa atttgtgata      2400
     aatttgtaat ttgcttcatt ttagtgctag atcccacagt taatgttttc taaacgtaga      2460
     aatacatatt tgaaatcatg ataacgagac tggaaaaaaa ttcgaatatg gcggtcgaaa      2520
     tgaccgcaac ggcggttcta ggtatacagt atgttccggc ggttctagtg                 2570
//
ID   piggyBac-29_LMi repbase;    DNA;    INV; 2333 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2333
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 105-105 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(447..608,593..925,898..1245,1255..1410,
FT                 1340..1657)
FT                 /product="piggyBac-29_LMi_1p"
FT                 /translation="MSSHLSEDEVLEILLQDNPLSGESNSDISDIVSDVSC
FT                 SDGEIDVLEENKYHCILVPLYSVDRRVQIYALYFFCRSKNKGELWHKHELR
FT                 RACGREERWNIMRVKPGPTKFAVKNVDSIESAFQLFLRRXIVDVILKWTNK
FT                 EGSLVYGSKWKPVDAIELKCFIGVLITEVLYRCLDLAGAYKAHNEAVTHLW
FT                 NKEDGRPIFSEAMARNRFTQISRCIRFDDADVRRHNRAPDKLAXIREILEM
FT                 WVDTFQEAHVPHSNVTIDEQLVAFRGRCPFRQYIPSKPGKNYGLYVIVQRL
FT                 TFSISKFTLVDKKMNLVKLVKEESCFRYGEXLRKQWQKCNNSWSRKRVALD
FT                 MVKXLENSGRNVTTDNFFTSLSLARELLKINLTLLGTVRKNKGELPQAFXQ
FT                 TKXRVKYSSIFGFQEHASIVFLLSEKGESCNFAQYNAFKEGSGRS"
XX
SQ   Sequence 2333 BP; 776 A; 366 C; 478 G; 704 T; 9 other;
     ccctcctaat accgtggggt ctataatgac cccaggccgt aattttctgt maaatacacc        60
     ttatttccta ttcctaaaaa ttatgaaaaa ttcggacttt tcctgaatta agtaatgggt       120
     tcgtaatata ttaatataac tttttgaaaa tatttagttt tgcagaaaat caagagagaa       180
     ccactgaata ccattggggt caaatgcgac cccgtttctc ttgcagtatt attacccaat       240
     aatgctgcat tgaatccgta actgttgctg tatttccttt gttttgttct tgtaaaccgt       300
     ttctctttag tattatataa tgtaactgtg tgttttgttc ttgaaatatt gttgtaacgt       360
     gtgattgttg ccaatacttt ataagccgac agttatttgt tccatacaag tggagactac       420
     tattgtgtgt gttgcattta gggaaaatgt ctagtcacct ttccgaagac gaagtgcttg       480
     aaatattact gcaggataat cctctatctg gagaatcaaa tagtgatatc agcgatatag       540
     tttctgatgt ctcatgcagc gatggagaaa ttgacgtctt agaagagaat aagtaccatt       600
     gtattctgta gatcgtaggg tccagatata cgctttgtat tttttttgta ggtctaaaaa       660
     caaaggagaa ttgtggcaca aacacgagtt gagaagagct tgtggaagag aagagagatg       720
     gaacataatg cgagtaaagc caggtccaac aaaattcgca gtgaaaaatg tagactccat       780
     agaatcagct tttcagttgt ttcttaggag aawcattgtt gatgtaattc taaagtggac       840
     taacaaagag ggtagtcttg tttacggtag taaatggaaa ccagtagatg ccattgaact       900
     gaagtgcttt atcggtgtct tgatctagca ggtgcttaca aggcccataa tgaagcagtt       960
     acacatctgt ggaacaaaga ggatggtaga cccattttta gtgaagcaat ggctagaaat      1020
     cgctttacgc aaatttcaag gtgcatccga tttgatgacg cagatgtgag acgtcacaac      1080
     cgtgctcctg acaagctggc tmccattaga gaaatacttg aaatgtgggt agacacattt      1140
     caagaagcac atgttcctca cagcaacgta acaattgatg aacaacttgt ggcatttcgt      1200
     ggtagatgtc catttcggca atatattcct tcaaaaccag gaaaataggg ttgaaattat      1260
     gggctgtatg tgatagtgca acgtcttaca ttctcwatct ccaagtttac actggtcgac      1320
     aagaaaatga atctcgtgaa gttggtcaag gaagagagtt gctttagata tggtgaaakg      1380
     cttagaaaac agtggcagaa atgtaacaac tgacaatttt ttcactagcc ttagtttggc      1440
     gagagaactt ctgaaaatca atctcacact cttaggaaca gttagaaaaa ataaaggaga      1500
     actaccacaa gctttcamtc agaccaaakg tmgagtcaaa tattcatcta tttttggatt      1560
     ccaagagcat gcttcaattg tttttttatt gtccgaaaaa ggggaaagtt gtaactttgc      1620
     tcagtacaat gcattcaagg aaggaagtgg aagatcgtga agaatgcaag ccagtaatga      1680
     tctggattat aataaaacaa aatcaggagt agataccatg gacaagctgg ttagaacgta      1740
     cactacaaag aggatgacag aaggtggcca atggtattat tttgcaacat gattgatatc      1800
     agtgcactga atgcatttat catatggcta cattttacac cagattgggc agaaggacga      1860
     actacaagag acaggcattt ctcatagaak tagaaagcca gacaaaatta tttccccagt      1920
     acttccatca acagtacaga aaaaagagga aggtgtccgt tttgtaaaag gtctgaggat      1980
     agaaaattca ctaataaatg ttcaaaatgt ggatgttgtg tgtgtgtaaa aaccactctg      2040
     caatttattg ctgtaagtgt aatgtgtcat aaatgtcaat tcggaattta atcaaaaatg      2100
     tttttagttt catgagaatc gtttgtaaat tttacggaaa taaataattt taaaaaaaat      2160
     gcattttaat ttaatgtaat cactgaatca tgttttagat tgtggaaaaa ataaggaatg      2220
     tgattttttt ctaccattat taaaactatc cttaataaaa aataaattcc gttggggtca      2280
     ctaaagaccc caatggtact cagtgtaaca aaaaatactc ggtattagaa ggg             2333
//
ID   piggyBac-2_DAn repbase;    DNA;    INV; 1487 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   PiggyBac DNA transposon from fruit flies.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1487
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 290-290 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 11-bp TIRs. TTAA TSDs.
XX
SQ   Sequence 1487 BP; 476 A; 267 C; 275 G; 469 T; 0 other;
     ccctctaaga cgtaagcatg cctgaaggca cgtattacgt ttttggccct aaaaaataaa        60
     ctaacagctt tttaatcgat taaataattt ttggcggttg ataaaaagca tattgaatta       120
     taaatctcag ctttaaagat ctttgaagct cttaacggca cttatgctta ggaatacata       180
     aagcatatgt tttttcccgc gtaaaatttg gtcggcggta tgttgtgtgt tgctgttcga       240
     atagtagcaa atgtataaaa cctatccagc tcataatttt ttttttgaga ggtaatttta       300
     tttactttta aaattaagtt gaagatttac aaatatataa aaagcatgcg ttgtgacagc       360
     gaaagagcga tacgtgcctt gaggcccgtt tggggattca agacaacttt tgttgccagc       420
     tgataacctc acaattcatt gcaatttatg tgtttgtgtc tgtttatgga aggattttac       480
     ttaaaagaat taaaaatatt atagaaaatg gcaaaccggg ttcggtataa ctatttgtat       540
     tgtgcgattc attcgtatac gcataccgct ttgagatcta cagcggtgca ggtgataatg       600
     tggtcttacc tggtcaccca aatcttggtg cttcacccaa cattgtatcg cgcttaaaaa       660
     aaaccgtata aagatttaag aatcgcataa ctaactttga taatttttat acatctttgc       720
     cattgatggt ttatctaaga gcgataggta ttcatagcct tggcacggtg cgaggaaacc       780
     gtatccccta ttgcaaacta tcaaacgata ttgccatcaa caaattgcca aggagttttt       840
     cggctgagta cgttgggtcc tcatatgatg cgatataacc aatgtactct ggagttacat       900
     tcgaaaaaac aaaccctcgt gaaggaactg caaaggcttc tcgctttgac agaaaggcta       960
     aacgacacat ttcaattgat tgtccccaaa ttgtgcatga gtataatgct cacatgggcg      1020
     acgtagatct catgcacggc ttaatgggac tctatcatat cagagcaaaa actagggatg      1080
     ccgcaacacg tattttttta tcacctaatt gatattatac ctaaaccatt tcccacattg      1140
     gttggatcga aacagtggaa aagaagttgc aatccctgta aaacttcaaa aatgcaatgc      1200
     atatgcaggg aatgcagtct ttatttatgc tgcacagcga ataaaaactg ttttgaagaa      1260
     tagcataaga aaaaataaaa aaaaaattca ttacttgaaa atgttttttt tccctcaaag      1320
     ccccaagcgt gccttcaggc ccgcttacct ttcttctcac cttacaggtg aaccgaagat      1380
     tctacgatat ttttaagcac ataattgagc ttagaagcat tcatttactt aaaaaaaaat      1440
     tatttgcata gtttttttca attattttgg aaagtagtct tagaggg                    1487
//
ID   piggyBac-2_DBp repbase;    DNA;    INV; 2744 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   piggyBac-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2744
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 619-619 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. TTAA TSDs. 13-bp TIRs. The
CC   consensus is ~92% identical to that of piggyBac-1_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           606..2396
FT                 /product="piggyBac-2_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MSRKGLTPSQIGSFFNSLDSEDDLEFSADDESDYYPN
FT                 KEDFETTDDEDLENEVEHPSDLNVSSKDLNDVSSSSKNVQRRNLLWRQRSL
FT                 ILNEDQLQFLTSAALPPELLELSQPIQFFSYLFPDKIFENISNETNLYIHQ
FT                 KDPNVNITFTPLDIQQFVGIVMYMSISRLPKCALYWSASIGIPSIQNIMSQ
FT                 KIFETIRRNIHFNNNDNNLPLTDPRHDRLFKIRPLIQELNNNFGKVPKEQF
FT                 LCVDEQICSTKARSLLKRYNPNKPHKWGFKIYVLSGNSGFCYKFEIDSGKE
FT                 NVVLLNEPDLGAASNCVVRLAREVPRHQNFRLYFDNYFNSLPLLKYLAESG
FT                 ILALGTIRKNRIPNFKSIENVHLKKNPRGTSVEYVVDYGGVDISCTSWVDN
FT                 KIVSLASNYAGKVPTDTARRFNKTKKEYIQIERPFAVAQYNSYMGGVDLID
FT                 SIIGRYKILLRSKRWQVRIFYHLLDLTISNAWLLYKRVLKANGYSGKILSS
FT                 SGFRLDIAEVLTKVNTKTKLGKRSTVIENALQLKKQRGPTQNVPNQIVRQD
FT                 QVGHWPNWADKRKRCKFPNCAGYSQVVCNKCGVALCFNKRNNCFTNFHLN"
XX
SQ   Sequence 2744 BP; 915 A; 447 C; 486 G; 896 T; 0 other;
     ccctttatac ggccgtgttg catatctgca acataccgtt tgaattcaaa tatttcataa        60
     tgtatatcaa gaaagtttca tgtgttaatg tgatatcatt attcaacaat gctttttttt       120
     aattgtaaga catggtcata ctcaactatg tgttttcaca acatattttt acttttcccg       180
     ccaatttttg tgaagcactc acgtgacctc cgttccaaac tttgtattac aaatatttcc       240
     taaaatacaa gttatttgtc taaacaaaac tgcacagttg aaaaggtatt tatgtttata       300
     atgcatatgc agtcaagtta ttatgttatg tgttatgtgt tacgtgaaaa tagtgagttt       360
     cgttatgttg cagatataca tcaaactgct tttctgactt gatttgtgca gtctcttatt       420
     tgatgcatat atgcaacata catgtgtttg tgttcattat tatgttgtgt gttgtgtttt       480
     tatatatatt tatttggtat ttgttgtcag tgtcgtctgt gttatatttt catctatggg       540
     accacagttg tttttttcaa atggtattta gtaaatacta ttgacttttg tattacatag       600
     gaataatgtc aagaaaagga ttaacgccct cccaaatagg aagttttttt aacagcttgg       660
     atagcgaaga tgatctcgag ttttctgctg atgacgaaag tgattactat ccaaataaag       720
     aagattttga gaccacagat gacgaagatt tggagaatga agttgaacac cctagcgact       780
     tgaatgtttc aagcaaggat ctcaacgatg tttcgagttc tagcaaaaac gtccaaagaa       840
     ggaatttgct atggagacaa cgcagtttga ttctgaatga agatcaactt cagtttctca       900
     cgagcgctgc attgcctccg gaactattgg agctttcgca gcctattcaa tttttttcgt       960
     atctatttcc ggacaaaatt tttgagaata tttcaaatga aactaaccta tacattcatc      1020
     aaaaagaccc aaacgtaaat attactttta ctcctttgga tattcaacag tttgttggaa      1080
     ttgtaatgta tatgtccatt tcacgacttc caaaatgtgc actttactgg tctgcaagta      1140
     ttggaatacc gtccattcaa aacattatgt cacaaaaaat atttgaaaca atcagacgta      1200
     acattcattt caacaacaat gataataatc tgcctttgac tgatccccgt catgatcggc      1260
     ttttcaaaat acgaccactt attcaggaat tgaataacaa ttttggaaaa gtacctaagg      1320
     aacagttttt gtgtgtcgac gaacagattt gttcaacaaa agcaagatca cttttgaaac      1380
     ggtacaatcc taacaagcct cataaatggg gatttaaaat atatgtttta agcggtaatt      1440
     cgggcttctg ctataaattt gagattgatt ctggcaaaga aaacgtagta ctacttaatg      1500
     agccagatct aggagcagca tcaaattgtg ttgtcagatt ggccagagaa gtccccaggc      1560
     atcagaattt tcgcctttat tttgacaatt attttaattc attacctctt ttgaagtatt      1620
     tggcggaaag cggaatctta gctttgggta caattcgaaa gaacagaatc cctaatttca      1680
     aatccataga gaatgttcac ctaaagaaaa atcctcgcgg cacatctgtg gagtatgtcg      1740
     ttgattatgg tggagtagac atatcgtgca cctcatgggt tgataataaa atagtttcat      1800
     tggcgtcgaa ctacgctgga aaagttccca cagatactgc tcgtcgattc aacaagacca      1860
     aaaaggaata tatacaaatt gagcgtcctt tcgctgtagc gcaatacaac agttatatgg      1920
     gaggcgttga tctaatcgac agtataatcg gaagatataa aattttattg agaagcaaac      1980
     gttggcaagt cagaatcttt tatcatttac tggaccttac aatcagcaac gcatggttgt      2040
     tgtataaacg tgttctgaag gcaaatggat attctggaaa aattttaagt tcatcaggtt      2100
     tccggcttga tatcgcagaa gtgctaacca aagttaacac taagacaaag ttgggtaaac      2160
     gaagcacagt catcgaaaat gcattgcagc taaagaagca gaggggtccc actcagaatg      2220
     taccaaacca aatagtacgt caggatcaag ttggacattg gccaaattgg gcagacaaaa      2280
     gaaaaagatg caagtttcca aactgtgcag gatactctca agtcgtttgc aacaaatgtg      2340
     gagtagcttt atgcttcaat aaaagaaata attgcttcac taattttcac ttaaattaaa      2400
     aggtcatttt agcgcttaat ggcaaatatt ataaaaaatg tacgttatat tgatgtaaac      2460
     tgactaatga aactattaaa tatattatga atttaaatat tttgtttact gtacttaaaa      2520
     cattgcaaat aaatgcattt atgttaaatg aatttttgaa atatataaac tttaattttg      2580
     aacccaagcg tatttgatgt atttatgcaa cataccgttt atccttaata aaagggtaaa      2640
     aaatcaaaaa tttgaaaaac gaaaaaaaag tgtatttttt atttttacgt atctatctaa      2700
     taacaaaaac cgcatcaaaa tcggagttga tgccatataa aggg                       2744
//
ID   piggyBac-2_DEu repbase;    DNA;    INV; 2796 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila eugracilis: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-2796
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 760-760 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. TTAA TSDs. 8-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1050..2582
FT                 /product="piggyBac-2_DEu_1p"
FT                 /note="transposase."
FT                 /translation="MKMIVEDTMRAALTDNISNNFKITIDDIHHYIGILIY
FT                 MSIYRYPNLRSYWGQNAFGPIQNCMTRHRFETIKKYFSLCDESQRIKNGQP
FT                 GYDPLFRTRKLVDYLNQRFDSVPKQARLCVDEQMCSTKMKHHLRQYMPNKP
FT                 HKWGIKLFVLCDSFGYAYRFEVYSGAGDNVILPGHPDLGASANIVVRLTQS
FT                 VQSFKNHIIYFDNFYTSLPLMVYLRAKGIYSLGTIRANRIPNCKLPNEGTI
FT                 NKLPRGSMIEYVGCSYGIELTNVLWKDSKAVRFLSSYVGVKPFARKDPRQG
FT                 TSKIPRFDRKSKKYVEIDCPQIVKEYNAHMGGVDLMDGLMGRYHIRAKTRD
FT                 AATRIFYHLIDMAVTNSYILYRRIQMANEANKEKMLELPDFREAVAAGMVT
FT                 YKCKNLPGRPSTYRSPCSQLVRAINSPSSRIEQTAQSPLSHRPPQLGLKQG
FT                 KKSKHPISSLRFDQVNHFPHWLERESGKRRCKLCKTSQTQCICPKCNLHLC
FT                 CTSNKNCFLEYHTKK"
XX
SQ   Sequence 2796 BP; 902 A; 509 C; 554 G; 831 T; 0 other;
     ccctctaagc cccaagagtg ccttgaggca ctcattacat tatttacaat tttaaaaata        60
     ataaacgcta tttctacgtt taaatatttt ttagccgtta agaatagatg ctcaattatg       120
     tatagaagct ttgaaagctc tcagaagctt ttaacggtac tttttgttta tacttgcaca       180
     gaacatgtgt ttcgccgcgt gtgaaatttg agctgcagtg aagtgggatt tcttttgaat       240
     ataaaagtta aaatataaaa ctaaaccaaa ccattaattt tttactgaga ggtaagttaa       300
     tttagtatta aaataatatt acagatatgc aaatatgtaa ttggtatgca ttgtatcagt       360
     gaaatagtga taagtgcctt gaggcatctt tggggcagta agcaaacttt tgttccaagt       420
     agctatttca gaattatttg taatctgcag tggtttaaag aggtttttct taataaaaat       480
     tcttaaatta gaaaatatgg caaatcgaaa gcgcttcaag ttatccgact tgacagatga       540
     tcagttaatg gaattatttg agtcagtccc gtcagatgag gaggtctcaa atatttctag       600
     tgacgacgag gacaatgatt taaatgtggt ggaagctcta aacgctgcat tagaggaagc       660
     cgattctgtc tcttttatag ttggcaataa ggaaaatgtt ttaaatagtg cccaggatcc       720
     taagtctact ggaaaggcta caaaacgtcc tcgatcgcca ttgccaacta tagaagattc       780
     gggatgcgaa tatttaccaa attctagagg atttaatgct gctggtaaac aaatataact       840
     gagatttttt atataagtga ttaataattt atatatgggt aggtcttgaa tcgattacaa       900
     aggaacccac taagattctc tggagggagc aatcgatgca gttgcatgta aactgtatag       960
     cctttcgagg agattcctcg cttacataag aaattaaggg gctggaaact ccatttgaga      1020
     tattttgcta cttttttgat ggagaaatta tgaaaatgat tgtcgaggac acaatgcgcg      1080
     cagctttaac tgacaacatt tcaaataatt tcaaaattac tatcgatgac attcatcatt      1140
     acatcggcat tctaatttac atgtcgattt accgctatcc gaatttgagg agttattggg      1200
     gacaaaatgc gttcggaccc attcaaaact gcatgacccg acacagattt gagacaatta      1260
     aaaagtattt ctctctgtgt gatgagagcc agcgcattaa gaacggtcaa ccaggctacg      1320
     atccattgtt tcgtacgcga aaactagttg attacttgaa tcaacggttc gactcggtgc      1380
     ccaaacaagc ccgcctttgt gttgatgaac aaatgtgcag cacaaaaatg aagcaccact      1440
     tgcgccaata catgccaaat aagccacaca agtggggtat caaactattt gtactatgcg      1500
     attcgtttgg ctacgcatac cgctttgaag tatacagcgg tgcaggagat aatgtgatct      1560
     tgcctggtca cccagatctt ggtgcttcgg ctaacattgt tgtccgtctg acacaaagcg      1620
     ttcaaagttt taaaaatcat attatttact ttgacaattt ttatacctca ctgcctctga      1680
     tggtgtatct acgtgcgaaa ggtatttaca gtcttggcac gattcgagca aatcgtatcc      1740
     ccaattgtaa gttaccgaac gaagggacca tcaacaaatt gccaagaggt tctatgattg      1800
     agtacgtagg ttgctcatat ggaattgaac taacaaatgt tctgtggaaa gacagcaaag      1860
     ccgttcgttt cttgtcatca tatgtgggtg ttaaaccatt tgcaaggaag gatccgcgtc      1920
     aaggaacatc aaaaattcca cggttcgaca gaaaatctaa aaaatacgtt gaaattgatt      1980
     gcccccaaat tgttaaggag tataatgctc acatgggcgg cgtagacctt atggatggtt      2040
     taatgggccg ttaccatatt agagccaaaa ctcgggatgc cgcaactcga attttttatc      2100
     atttaattga tatggcagta acgaactctt atatattata cagacgtata caaatggcga      2160
     acgaggcgaa caaggaaaaa atgttggagc tcccagattt tagagaagcg gtggccgcag      2220
     gtatggtaac atacaaatgc aaaaatttac caggtcgtcc atctacatat agatcgccgt      2280
     gctctcagct agtgcgagct ataaactcac catcctctcg gatagagcaa acagcacagt      2340
     ctccactgtc tcaccgacca ccacagcttg gccttaaaca aggaaaaaaa tcaaagcacc      2400
     ctatatcaag cttgcgtttt gatcaggtaa accattttcc tcattggttg gagcgagaga      2460
     gtggaaaacg tcgttgcaaa ttatgcaaaa catcacaaac acaatgcatt tgccctaaat      2520
     gcaacttaca tttatgttgc acatctaata aaaactgttt cttagagtat cataccaaaa      2580
     aataaaattt gacatggcaa aacaaaattg attcttttta ctctcaagtg cctaagggtg      2640
     ccttgaggca cctattcagt ttttctcacc ttacaggtaa aaaaaaggtt ctacgttctt      2700
     tttaatagca tttttgagtt aagaaggcac aaatcaattt agaaaaaatt atttcattta      2760
     atttcttgcg ttattgtgga aagtggcatt agaggg                                2796
//
ID   piggyBac-2_DF repbase;    DNA;    INV; 2586 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila ficusphila genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2586
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 807-807 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. TTAA TSDs. 15-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2586 BP; 837 A; 487 C; 475 G; 776 T; 11 other;
     ccctctagtg cccaagacca gctctagacg ggtaatgtta aaaataccgt tattttatta        60
     ggggaagtcc aaaaattaag ttggttgcat ttggaataca tactagagct tgcgcaagct       120
     gctgtattca tttgaagcag aaaatttgtg caactcggac gaactaatta ttttgtaaga       180
     agtgtatgta ttttttttaa ttataataaa tagtttgctg ctgaaaaaaa aattataccg       240
     tgttgctgat aatctcaagg acgcaaaaaa cgaaactcac acttaaaata agttttagtt       300
     agctttttat tgcttttata aagtatcccg tctagaggcg gtcttgggac agttcgcgaa       360
     aaaaaaatta tacggtaagt tttaaaggga aacaacctat gacatatttg attagaacta       420
     attgcttcag tagacatgga acgacgacaa gttaataagc tatcagctct tcccgwcgtg       480
     gagattgaaa aatttttwaa ttctattgaw tttgacattg atacggatgg agaagaagaa       540
     ttggaggacg atttkactaa tgatgtttgc gatgtttcac ttcctgtcaa tgaggaagat       600
     gaagaagcga ttgaaaaagt gctacatatg tcggattcta tgttggctag agagatttgt       660
     gtaacttcaa gcggaagtcc tactcctttt gcaaaactgt tgtcaccctc aagttcgatw       720
     gcgtccaatt caccgcacag aaacgcaaac gtaaagcgcc tgctgagcat aatactgctc       780
     atgttaaaga aagcacaata gctgaatgtg gatctgtttg gactatcgac ccaaaagcac       840
     cgcatttcaa aaagatgttg tgtcgccaaa cgwacctagt catggataaa tctgcaatat       900
     cctttaatga scctgacctc ggagaactta aaaatcggat acgccattca agtgwcttca       960
     atttttttta aatgattcta ttattgaaca tatcacccag caaacaaaat tgtatgctgc      1020
     ccaaaaggat gtcaatactt cgttttccac aacaaattta gaaattcgac aatttattgg      1080
     cattctattt tcgatgtcag ttcttcgcta ctcaaatgtt cgctcacatt ggggggagta      1140
     cgcatttgga acwatacaaa acacaatgtc aagaaatcgc tttgaaaaaa tacgaggaaa      1200
     tttgcatttt aatgataaca gtaagttgcc ctccaaggat tctgccgacc acgatccttt      1260
     atacaaaata cggccgctcg tgaatcattt caatgacaag tttcaattag ttccgatgcg      1320
     ccaacgctta tctgtggatg aacaaatgtg tgcaacgaag atgaagacct ttctagacaa      1380
     tacttaccag acaaaccaca caaatgggga gtgaaattca ttcaatttgt gtgactcttc      1440
     tggcttttgc tataatttcg agatatattg cggagcaggt gacaacgttg ttcaaactgg      1500
     ctcaccagat cttggtgcgg cagcaaatgt agttgttcga ttgtcacgca atgttccgga      1560
     tttcaaaaat cagattatct actttgacaa ttattatact tcgttgccgc ttcttgtata      1620
     tctcaagtcc cggggaatat tttctttggg aactattcgc tcgaatcgca ttccaaattg      1680
     taagctgcca actgacagcg acctcaaaaa acaagtgcgt ggatattcta cagaatttta      1740
     cgttkacata aattgcccaa atgttatcca caaatacaac agccacatgg gcggtgtcga      1800
     cttaatggac ggacttatag gtcgatataa aattcccgta aagagcaaca agtatacaaa      1860
     tcgactattt acgcatatgc ttgatttggc catggtaagc gcttacattt tgttccaccg      1920
     aataaaccat cccgacgcta ataacgcaaa ataccaattg ccaaatttcc gatcagaggt      1980
     cgcatacgtg ctttgcatgc tacaaactcc aggataatct gccaaaagga cccaggcggc      2040
     cgcgacaagt tgatggaaag gaaaataaat gcacagggag gaaaactttc ctaccgatta      2100
     ataatgtacg ttatgatacc gtcgagcatt ttccaatgtt tttatcacgc gctaacaaaa      2160
     aaatttgtaa gcttcctggt tgtacttccg aaactcaaat tgtctgccgt aagtgtaata      2220
     taaacctgtg cttttcccag aataaaasac tgtttctatg attttcatca caaataagta      2280
     aacgaacttt ttgtacacaa atatttgaag ctttgtgaat ttaagtaact ttagttttaa      2340
     ttgttatttg tttttggtgc tcatctttat atcatttata ataaaacatg taaacaaaag      2400
     aattgattac ctaatttttt gctggcctat cttcccaaag ccgcctctag gcggtccaag      2460
     gttatagtca tataaaactc gatccgagca aaaaaaaatt ttttttaaaa caaacattca      2520
     cttttgatac atactgaatc caaaaataat ttttttcttg gaaaagaaaa tttgggcact      2580
     agaggg                                                                 2586
//
ID   piggyBac-2_DSuz repbase;    DNA;    INV; 2555 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2555
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 123-123 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. TTAA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(578..1204,1195..2322)
FT                 /product="piggyBac-2_DSuz_1p"
FT                 /translation="MKSTVLNSMQSDFDETVQQIYEKIDLNSLRWRHASKG
FT                 NEIDTEWKNHVTAGIIKSPVEYFNSFFDDDILEKICMETNKCAFQNKEVEL
FT                 KCEVWELRRYIGILLYLGVVKIPTMRMAWSNNFKLSAISDALPRNRFEKIK
FT                 SYFHINDNLKQPGKGEDNYDKLYKIRPLLNKLKEKFNEISQEEYQSCDEQM
FT                 ISFKGKSSLIYFAIYEFLIVFNLIYISGHHSLKQYLPKKPHKWGFKMFSRA
FT                 GVSGIIYDFCLYVGDGTCKSYGLGLSSDIVLHLASNIPDNQNFKLXFDNWF
FT                 TSVSLMIALKERGILAVGTIRNNRLKNCNLLNEKQLAGKGRGSFDIKVEAT
FT                 YNLISCRWYDNKCVQLISNYIADTPVSECMRWCRKEKIMVKIPRPAIVDRY
FT                 NRNVGGVDLSDMLLELYKVNHRSKKWYMRIVYWCINVTVVNSWLLYRRDHK
FT                 QLFERTKHMPLIXFQLDIAKELLNANVVQSRKRGRPAFALLNFNSPSSSIG
FT                 IAEQSSPASSKGIDSPKSSFPKRSYIMTPAKAIRYDQIGHWVQWESKGRCR
FT                 MCTTGFPRSKCSKCNIHLCSNPNKNCFLLYHTNTNTEK"
XX
SQ   Sequence 2555 BP; 886 A; 394 C; 494 G; 778 T; 3 other;
     ccctttcatg cccactgttg cctataggca acattgactt tacatttaaa tatcggttac        60
     gattcaaaat ttttgtggac ttttttttat gggggattcc ccctattaac gttctttcat       120
     ttttcgtatt ttttgcgaac gcagttgcag cgtgtgctga gttatcgata attcttcgaa       180
     gcgaccacag ctgccgaaaa attttaccaa aaagtgtccg tgaaaatagt gcgattaact       240
     aaaactagtg acaaagatta gaaaaataag aacgcacaat tctttaaaat aggttagact       300
     atgataaaag aaagaatttt ttcaaaagtt gatgttgcct acaggcaaca ttggtcataa       360
     gaggttcgca tgtaataatt tctttttgct catttaggca tgcgtccgaa gggactaaac       420
     gaattggaaa ttcaaaaaat ttgaatttga ttgggaagat tcaaacgacg aagatgaaaa       480
     tgaagagcca gagaataaaa ttgatgtttt ggaggcattc atagaagaaa gtctgcagga       540
     cataatacag caaggtggaa ctattgaaga tgagcttatg aaaagcaccg tgcttaattc       600
     gatgcaaagc gactttgatg aaacagtcca acaaatttat gaaaaaatcg atttgaatag       660
     tttgagatgg agacatgcct caaaaggaaa tgagatagac acagaatgga aaaaccatgt       720
     gactgctggc atcataaaaa gtcccgttga atatttcaat tcattttttg atgatgacat       780
     tttggaaaag atatgcatgg aaactaataa gtgcgcattt caaaataaag aagtggagct       840
     gaagtgtgag gtatgggagt tgcgaagata tataggcata ctgctctacc taggcgtagt       900
     caaaattcca acaatgcgta tggcatggtc aaataatttt aaattatccg caatatcaga       960
     cgcattgcca cgaaatagat ttgaaaaaat aaaatcatat tttcacataa atgataattt      1020
     gaagcaaccc ggaaaaggtg aagataacta tgacaaactt tataagatcc gtcccttatt      1080
     aaataaatta aaagagaaat ttaatgaaat atcacaagag gaatatcaaa gctgtgatga      1140
     acagatgatt tccttcaaag gtaaaagtag tttaatttat tttgcaatat atgagttttt      1200
     aatttaattt atatttcagg tcatcatagt ttaaagcagt atctccctaa aaagccgcac      1260
     aagtggggct ttaaaatgtt ttctagagct ggggtgtctg gcattatata tgatttttgc      1320
     ctttacgttg gagacggaac ttgtaagtct tatggacttg gattgtcttc agatattgtt      1380
     ttgcatttag cttcaaacat tcctgacaat caaaacttta aactatwttt tgataactgg      1440
     tttacttcag taagcctaat gatagcatta aaggaaaggg gtatcttagc agttggcaca      1500
     attcgcaaca accgtctaaa aaattgcaat cttcttaatg aaaaacagtt agctggcaag      1560
     ggcaggggat cttttgacat aaaggtcgaa gcaacttata acttgatctc gtgtcgctgg      1620
     tatgataata aatgtgttca gcttatttca aattatattg ctgatacacc agtttctgag      1680
     tgcatgcgtt ggtgccgcaa agagaaaatc atggttaaaa tacctcgtcc tgctattgta      1740
     gataggtata atagaaacgt ggggggtgtt gatctatcag atatgctatt agaattgtac      1800
     aaagtaaatc atcgctcaaa aaaatggtac atgcgaatcg tttattggtg tataaatgtg      1860
     acagtggtga atagctggct actataccgc cgagatcata agcaattatt tgagagaaca      1920
     aaacatatgc cacttataak ttttcaacta gatattgcca aagagctact taatgctaat      1980
     gtggttcaat cccgaaaaag aggtcggcct gcatttgctt tattaaattt taactctcca      2040
     agctcatcaa tmggtattgc agagcaaagt tctccagctt cttccaaagg gattgattca      2100
     ccaaaatctt catttccaaa gaggtcttat attatgactc cagcaaaggc aataagatac      2160
     gaccaaattg gtcactgggt tcagtgggaa tcaaaaggta gatgtagaat gtgtactaca      2220
     ggctttccca ggtcaaaatg ttcaaaatgt aatatccatt tgtgctcaaa cccaaataaa      2280
     aattgttttt tactgtatca tacaaatact aacaccgaaa aataaagatt gttagtaaaa      2340
     atctcataat tgtatttact tgtaaaggta atattactca tacgtacgta cttttttata      2400
     tatatggatg gacaaatgtt gcctataggc aacattgcag taaggacata ccaaaggact      2460
     tagagtatcg aaaatcggaa tgaaagttac ttggggctcc tataaatcat ttatagcatt      2520
     aaatattttc ccagtttaat ttgggcatga aaggg                                 2555
//
ID   piggyBac-2_FoCa repbase;    DNA;    INV; 2914 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2914
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2498-2498 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TTAA TSDs. 10-bp TIRs.
XX
SQ   Sequence 2914 BP; 914 A; 565 C; 587 G; 845 T; 3 other;
     ccagttgcct cccaagcaca tgaatgtcat gtgscgcaca aamcgtcgct aagggcccaa        60
     gtacatcaaa gtcatgtgct ccttgaacgg taaccatgcg cccaaataca tcaawgtcgt       120
     gtgctccgac tgcggtaacc atgcgcccaa gcacatcaat gtcatgtaat tccaaaaaca       180
     aaattttccg cccgagcaca tcaaagtcgt gtaattcaca aaataaattc tgtgcaaatt       240
     tctaaatagc tgtagttttt tttggagctt gtatattaca attgtatagc tcttcaggca       300
     tgtctggtaa gtatttatca tcgacaagca tatatataaa tatatatcca attttctcac       360
     acttgaaaat acgacagaca gtgaagacga cgaattttcc ttgggtcagt tctcagattg       420
     cgactccgat gaggaattct tgctacatga acacaacgac gacgatgacg agaacatgat       480
     caactttccg gaagatgaag atgaagaagg cgcggatgta gattctgagg acgagttggg       540
     tgacctcgat gaacaccccg atgtacgtat attatttgta tatttgtaca tatgtatatt       600
     cctaaataat tttattttcc ccaaattgat tcatatttca gactaatgtt atccgctacc       660
     gtaaaaatgt cccattttca ccacaagtta gtgattatga ggatccaggg gaatttctaa       720
     agccggattt tgggatcacg atggaatcta ctgctctaga gattctacaa aaattcttgg       780
     accccgaaat tttggatgaa attgtccttc agaccaatgt ttatgttcaa caacaaagac       840
     gggcgaatcg aaatacaatg aaggattggt ctccagtgaa tggggaagaa atatggcaat       900
     tcttctctct ggtgatgatg atggggctgg ttatcaagcc ggagatcaag gactactggt       960
     ccacagactc gatgttttct accccatttt tcggtcattt tttggtcatg tcaaggaata      1020
     ggtatataca acaataaaat acaataaata cttatgtaca ctagttatca tacctatttg      1080
     cctactagat ttgagtcaat ccttcgggga ttccatcttg tggataatga caccgtccca      1140
     cccaacaata aagatcggta tataaagttt gggagtttta tggacaagtt attccaaaat      1200
     ttccgcaaag caataaattt gggatcattt ctcacggtgg atgaaacttt gctctcgttc      1260
     aaagggaggt tatctttcaa gcagtattta aaagacaaga gagccagatt tggaatgaag      1320
     ctatatctcc tctgcgattc ggctagcaga tttgtcctca aagctcttcc ttaccaagga      1380
     agaactacca aaatagagaa ttcaagctgg attcaagaac ttggatttgg tggcgctact      1440
     gtgatgactc ttcttcatgg ctattttaac aaatttcata gaatcactat cgacaattgg      1500
     ttcgtgtctc cgatcttggc attgcgattg aagcaacttg gtacgtacat acttggcacc      1560
     gtacagaaaa gaagaaagct gatgccaaaa tggacggaca aattagcaaa gggacaagtt      1620
     gcgacttatt cttcttcaga cattttagtg gaacggtacg tttttgtaaa tttaccaata      1680
     aaacaataca ataaaccgga tgtcaaattt tcagcagaat gacgtgaaga atttcatttc      1740
     atgattttta ggtggtctga ccggagagaa gtgataatgc tgaacacatt tatgggacac      1800
     cgaatggaag aaatcacaac cacaaacccc aacaacaacc gagagaaacc atcaactgtt      1860
     ctcgtttata atgcgacaat gggcgctgtg gataacgtcg acagagtcac caagccattc      1920
     acatctgtcc gcaaatcctt caaatggtac aggaaagtat tcttctactt cttggacata      1980
     gcaatttaca attctcacat cattcactct tctttccggc caacgaagga acactcaagt      2040
     tataaagatt ttgtacgaat tataatcaaa gaaatattag aaaaatatcc accacaacgt      2100
     ctatcattgg ggaggaagtc caacacccag tcggaacggc gaatcggcac ccactttcca      2160
     gaaaagatgt tagaagataa tgtctccgtc ttccgggatt gccacctatg ctgtttggaa      2220
     ggcaaaaggc gcaccacagc tttcagatgt gaaacgtgtc tgaagttttt ctgcataaag      2280
     agcacagact cgtgtttcaa gagatttcac acgctttcga aattacccgt caaaaggaag      2340
     cgatctaacg ccaatgcatc ttcagcatcg acgagtcaaa gcattatgta ccaatcagta      2400
     cctcggtctg aaactgactc tgaaattgga ttaggattcg gtgaggcgaa tgaagtgaga      2460
     tttcaagaag cggattttga atcaaatgtt gtagtaatgg aggaggagga agaactgttt      2520
     tccatttaaa atgtgaaatt acttgtgatt gtgcgaaaat atttagccga actatgaata      2580
     agtttgtgaa attttataat ttatgattta tagttgtttt gccgagtttt tccggcctat      2640
     attcgaattg gctatcatga tgttgtatgg tgttttattg tgaaaaaaat tgcttcgcgg      2700
     cataagtaat gataattaaa atgatttcca catatcatat tatcagtatc acccttgcat      2760
     taatttgggc tatagcgtac ttgtcagcat ttcatatctt gggtcgcatt gaaaatgctt      2820
     ctccaagaaa agtggtacaa agatcacgaa attcgaagcc ttatcttggg ggcttagcaa      2880
     ctattttatg gcttcaaatg tggcaggcaa ctgg                                  2914
//
ID   piggyBac-2_Hmel repbase;    DNA;    INV; 2418 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a piggyBac element from Heliconius melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2418
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           382..2139
FT                 /product="piggyBac-2_Hmel_1p"
FT                 /translation="DNIHDFSTIIQLFLYRPLAAHEILDALENVSDNEEDY
FT                 RERLICILPPPVDPDCLTDEDSGEEDNVTLNNLPRNILLQPAEVMIQGQIM
FT                 VSDTEEEPSDSTGRTKRRRTYAWRKRDLAKNPVNWPDVQGACQDKRPIEWF
FT                 ENFLDEDVISLLVSESNKYAVKKNLPGDITTEDMKCFIGILLVSGYSWLPR
FT                 RRMYWENSPDTKNELISSAMTRDRFDFIFRHLHVNDNLDLQDKYTKVRPLV
FT                 TLLNKKFLEFSPLEEHYSVDEAMIPYYGRHGCKQHIKGKPIRYGFKAWVGA
FT                 TRLGYVLWMEPYQGATTMCNPIYKELGLGASVVLTFCDVLISRGFDLPYHV
FT                 VFXNFFTGTPLLEEITKKGLRCTGTVRENRTSSCPLITSKLLXKKERGAVD
FT                 YRTTHDNTFIIAKWHDNNIFSIASNAVGIXPKQSAKRFSQSEKRNIVIEEP
FT                 HMVSIYNKYMGGVDRSDENISHYRIGIRGKKWYMPLLTHMIDLAEHNAWQL
FT                 YKINHGKLDHLGFRRRVAIALIESNRKNAKRXPSRPSHHEHADSRKDQMNH
FT                 LVIPQSKQTHCRQCHKKCLTRCKKCDVGVCVKCFETYHS"
XX
SQ   Sequence 2418 BP; 794 A; 406 C; 456 G; 751 T; 11 other;
     cccagataag cctactgtcc tatatttagg acagtagaaa taaaaaaaaa tatcagaata        60
     ccctctttat ctaagattat ttagtcttat gatttgcagt aagaaacgtg tcagctttat       120
     tagaaaaaat aaaaagacag ttattttaac agtttttacc ttatatttta ccttataagt       180
     gtgtaataaa agtgcgttgc agacatggca aatracaggt atgtataaaa agttatattt       240
     tactcgtgag ttgttttttt ctgtgttaat atctagttga taaccttaac ttttgtacta       300
     aataaatatt ctagcaaaat aatataaata aattacgtat aacttgttac aaatactagc       360
     gtactatata taggacagta ggataatata catgatttta gtacaataat acaacttttt       420
     ctttacagac cgttagctgc gcatgaaatt ttagatgctt tagaaaatgt ttctgataat       480
     gaagaagatt atagagaacg actgatatgt attctacctc ctcctgttga tcctgactgt       540
     ctcactgacg aagattcggg tgaagaagat aatgtaactt tgaataattt gccacgaaac       600
     attctgcttc aaccggctga agtaatgatt caagggcaga ttatggtgag tgatacagaa       660
     gaagaacctt ctgattctac aggtcgaact aaacgtaggc gtacctacgc atggagaaaa       720
     cgggacttgg caaaaaatcc cgtgaattgg ccagatgttc aaggcgcttg ccaagataag       780
     cgcccaattg agtggtttga aaacttctta gatgaagatg ttatttcgtt gttggtgtca       840
     gagagcaata aatatgctgt caaaaagaat ttgcctggag acataaccac tgaagatatg       900
     aaatgtttca tcggcatatt gttggttagt ggttattcat ggctcccccg tagaagaatg       960
     tattgggaaa actcccctga tacaaagaat gaattgatca gctcggctat gactagggat      1020
     agatttgact ttatttttcg ccaccttcat gtcaatgata atctggattt gcaagacaaa      1080
     tacacaaaag tacgccccct agttacactt ctaaataaaa agttcttaga gttttctcct      1140
     cttgaagagc attacagtgt agatgaggcc atgatcccct actatggtag acatggctgc      1200
     aaacagcaca taaaaggtaa acctattagg tacgggttca aagcttgggt tggtgctaca      1260
     cggttagggt atgttttatg gatggaacca taccaaggtg ctacaactat gtgcaatcca      1320
     atatataaag aattgggrct gggtgcaagc gttgttctca ctttttgcga tgtgctgatt      1380
     tcacgtggct tcgaccttcc ttaccacgta gtttttgawa atttttttac tgggacgccc      1440
     ttgctggaag agataacaaa gaaaggcctt cgttgcactg ggacagttcg agaaaacagg      1500
     acatctagtt gtcctctgat tacatcgaag ttactgraaa aaaaggaacg tggtgctgtc      1560
     gattacagaa cgacacatga caacacgttc attattgcta aatggcatga caataatata      1620
     ttcagtattg cttctaatgc tgtaggaata matcctaaac aatctgccaa acgcttctca      1680
     caaagtgaaa agagaaacat tgtcatagaa gaaccacata tggtgtccat ctataacaaa      1740
     tatatgggag gagtggatcg gtctgatgaa aatatttcac attaccgaat tggtatacga      1800
     ggtaaraaat ggtacatgcc gttgctcaca cacatgattg atcttgccga acataatgca      1860
     tggcagttat ataaaataaa tcatggaaaa ctggatcatc ttggctttcg cagaagggta      1920
     gcaattgctt tgattgaatc aaacagaaaa aatgccaaaa gagrgcctag ccgaccctcc      1980
     catcatgaac atgctgatag tcgtaaagac caaatgaatc atctggttat tcctcaatcg      2040
     aagcaaacac actgtcgtca atgtcacaaa aaatgtttga cacgttgcaa gaaatgtgat      2100
     gttggagtgt gtgtcaagtg ttttgaaaca tatcattcat aaatagtgtt aatctagtaa      2160
     attacatwta acaatgggta atataatcaa yagttatcta ataaactaca ctttttgatt      2220
     acattctgtt ttgtcataaa tggtmtttta tttcctctta ttatcctact gtcctacata      2280
     taggacggct gtttccctga aarccttaca cttaattttt ttttcataat tttttttatg      2340
     ttgcataaga tctaataaac taaataatgt aacttttttc aaaattttca gaaaatttta      2400
     gtttcaggct tatctggg                                                    2418
//
ID   piggyBac-2_LMi repbase;    DNA;    INV; 2760 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2760
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3328-3328 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1101..2327
FT                 /product="piggyBac-2_LMi_1p"
FT                 /translation="MMRHIKLCTETEARRRTQDDSWTVDIEELDAFVAIMY
FT                 ARGVYGAKNFPLKGLWSTVWGPPFFRQTMGRNRFVEILKYVRFDIKSTRSE
FT                 RLKTDKFALASAIWNSFIENSRSCYKAEPYVTIDEQLLPSKTRCPFTQYIA
FT                 SKPDKFGIKLWLLVCVSSKYILNGFPYTGADPLRPADQSIGENVVLRLMEP
FT                 YLGKGVNITTDSYFTSLKLAKRLRAASTTLVGTLNRNRREVPPTAKTRKQP
FT                 LHSTVVYKNDDGTTLTVYQGKTNKNVLLLSSLHSHVSVSESQKRTPETVQF
FT                 YNETKFGVDVVDQMARMYSTKAGSRRWPMHIFYNILDLAAINSWVLYKEVT
FT                 GERISRREYILDLCEELRAPYTEQEIKRQIEMMQTIKVDHRRQQRERSVKF
FT                 VPHAKEITQLCLFRL"
XX
SQ   Sequence 2760 BP; 902 A; 486 C; 574 G; 798 T; 0 other;
     cactagaagg accgaggggc caaattggcc cctgtaacga tttttccctt gtgtcctgag        60
     caaaccgtta actgatttga gttgacattt tgtgactttt catcattcat ataaactatt       120
     gtgtaccctc ttttagagtg ttctactttt attagattcc gaaatattaa gattactacc       180
     tagaaggacc gcagggccaa tttggcccct cttagcgttt ctctgtattt tcagcatttt       240
     gccttgtaat aatgtgtagc aaataaaacc atctgtttta gctttgttgt ttcaataagc       300
     gacaacaatg caatacattc cagcactgat tgttggactg ttgaagcaat actctcgatt       360
     attgtctgtc acagtatctg atagtcgtcc ctgcaaacat gacctataaa ttcaagaaag       420
     gtctaacgga cgcagaaata ctagaagaac taagaaaaat agaagatgaa agctcaggtg       480
     aagaatttga ggtttctgat agcgatagcg atcaggacag tgaagaacgt atggtagttt       540
     cagtgtctgc agatgaagga agtgattctt ctaacgaaag tgttagtttt ctaaccagtt       600
     tggaacaaaa tgaagcttct acagctagtc tcccttctag tgtccgaaat cctaactctg       660
     taagatcaac aacccagaaa aaggcttctt cttctggaag tgaagagaaa aaagaaacag       720
     caaaagatgg aactgtctgg aaagttgtac cagtgggctc taacccaggt cagtaatatg       780
     tctggtcttt agatagagtt atacatggta aaattgaaat aaacactagt taaatacaaa       840
     atatgtatga taaataacag taacaacaag ttgatatagc tttgcataat ataactagat       900
     ttgatagcat ataagaacaa atatatatgt ataatactat tacaatacac attacaaaaa       960
     tataattctt ctgtacattt tcaggtcgtc tgcaaaattg taacattctg cgagagagtc      1020
     caggaccaac atcatatgct aaaaggaaca ttcaaaatgg gaaactcctt agtgcttggc      1080
     ggcttatttt cagtgcctcc atgatgcgcc acatcaagct ttgcactgaa actgaggctc      1140
     gtcgtcgaac acaagacgat tcctggacag tagacattga agaattggat gcctttgtcg      1200
     ccataatgta tgcaagaggg gtgtatgggg caaagaattt tcctctgaaa ggtctttggt      1260
     caacagtatg gggtcctccg tttttcagac aaactatggg gcgcaataga tttgttgaaa      1320
     tactgaagta tgttaggttt gacataaagt ccactagatc tgaacgtctc aagactgaca      1380
     aatttgctct tgcctcagct atttggaatt ctttcattga aaacagtagg tcatgctata      1440
     aagcagaacc ttacgttaca attgatgaac aacttttgcc ctcgaaaaca agatgccctt      1500
     tcacacaata cattgctagc aagccagaca agtttggtat aaaattgtgg ttacttgtat      1560
     gtgtttctag taaatacata ctgaatggat tcccgtacac tggtgccgat ccccttcgac      1620
     cagctgacca aagcataggt gaaaacgtcg ttcttaggct tatggaacca tacctaggca      1680
     aaggtgtgaa tattactact gatagctact ttacttcgct aaaacttgca aaacgtttga      1740
     gggcagcatc cacaacttta gtaggtacac tgaaccgtaa tcgaagggag gtgcctccta      1800
     cagcaaagac acgaaaacaa ccactccact cgactgttgt gtataaaaat gatgatggta      1860
     caaccctaac agtttatcaa gggaaaacaa ataaaaatgt cttattattg agttcacttc      1920
     actctcatgt atctgtgtct gaaagtcaga agaggactcc tgaaacagtg caattttata      1980
     atgaaacaaa atttggggtc gacgttgtgg atcaaatggc aagaatgtac tccacaaaag      2040
     ctgggtcaag acgttggcca atgcatatat tctacaatat tcttgatttg gctgccataa      2100
     attcatgggt attgtataag gaagtgactg gtgagcgaat tagtagacgg gagtatattc      2160
     tggatttgtg tgaggagctt cgagcgccat atacggagca agaaataaaa cgtcagatcg      2220
     agatgatgca gacaataaag gtggaccaca gaaggcaaca aagagagaga agtgtaaaat      2280
     tcgtacctca tgcaaaggaa atcacacagc tatgtttgtt caggttgtga gaaagcagtg      2340
     tgtgggaaat gtgagaagaa aagacgagtg tggtgtgaca agtgcagcaa cgaacagcag      2400
     tgagttcttg tggagagtgt ttgtgtaaaa tcaattgttg tgaaatatat atttaaagca      2460
     tttattctat taatactgaa tgtatgtgaa atcttcttca ctatttagac attcatgcag      2520
     aaaacaattc taaaatttgt aagttggagt agataaattt tttctagatt ttggttacaa      2580
     gacagtaagt gtcgtccata tattgcacaa attcatgtaa attatactca ataaaagtgt      2640
     atatgaagat tacattgcat tatttttcac aatctggcca tataagaaat aaaactgcat      2700
     ggggccaatt tggccccagc ggtccttgta ggtagtagcc tgcatgcggt ccttctagtg      2760
//
ID   piggyBac-2_RPr repbase;    DNA;    INV; 1228 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1228
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3384-3384 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           216..887
FT                 /product="piggyBac-2_RPr_1p"
FT                 /translation="YVLVFSIICFYKLFILLFFLEGFYVFVNPLKLFLLSS
FT                 MHVTGTVNQNTQKPDIIDFYNLTKGGVDVFDKLCHSYSAKRASRRWPMRYF
FT                 FGVLDAAGINTFVLHRLNNNPGNRTIRSDFLKSLAFSLEEPFMKLRMNNTK
FT                 LPKTVRTEIRTVLGLPESLEAAPTPPCRGRSATRTRCHLCKNDRKTYNSCD
FT                 ICALPICRQHEKIKRLCVRCGLEGTIEDGRELVT"
XX
SQ   Sequence 1228 BP; 358 A; 240 C; 238 G; 392 T; 0 other;
     ccttcggact acaacgtacg ggtcattttg acccgcgcgc gcctaaaacg cgcgtacgtc        60
     agttggcagt ggcgggagag ggtaaggact ttgagtagct tccttttcag ttttcctgca       120
     gatgttaacg cggcaatagc caacaccaaa ggtacgtgac tttgtaaaat tctaagtaca       180
     ttaagactgg gtcaatatga ccccacgttc tgtaatatgt tctggttttt tcaataattt       240
     gtttttataa attattcatt ttattgtttt tcctggaagg tttctacgtt tttgttaacc       300
     ctcttaaatt gtttctgctg tcatcgatgc acgttactgg aactgtgaac caaaacacgc       360
     aaaaacctga cattattgac ttctacaact tgacgaaagg tggagtcgat gtttttgaca       420
     agttatgcca cagctattca gccaaaagag cttccagaag atggccaatg cgctattttt       480
     ttggtgtact agatgctgct ggaataaaca ccttcgtact tcatcggctc aataacaacc       540
     cagggaatcg aaccatccga tccgactttt tgaaatcatt agcgttctca ttggaggagc       600
     ctttcatgaa gcttagaatg aacaacacaa agctacccaa aactgtacga accgaaataa       660
     gaacagttct ggggcttcca gaatctttgg aagctgcacc tacccctcct tgccgaggcc       720
     gatcagcgac aagaacgaga tgccacctgt gcaagaacga caggaaaaca tacaattcct       780
     gcgatatctg tgccttacca atttgtagac aacacgaaaa aattaaacgt ttgtgcgttc       840
     gatgtggact ggaaggaact attgaagatg gacgagaatt agttacctag tcccttgggg       900
     cagaatgata taaaatgtta ggtacctaat tattttattt tttcgtgtct gtttttcatt       960
     tttttgtttc ttggagttac ctgaattttg taaattttag tacctatttt ttaaaattaa      1020
     ctatttaagt actttttttg atatgcacct aataaattag aattcattgt ttccactacc      1080
     acgttaataa aagtctgatt tttgaaaata ttgattttat tatttcctta aatgtcaaac      1140
     aggtcttatt gcaaataaaa aatgaattgg gtcaaaaaga cccaacgttg taatgcatgt      1200
     ctcggcaatt cacgttgttg tccgaagg                                         1228
//
ID   piggyBac-30_LMi repbase;    DNA;    INV; 2472 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 20.01, Created)
DT   10-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2472
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 106-106 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           288..2090
FT                 /product="piggyBac-30_LMi_1p"
FT                 /translation="MEEPSTSTGKGSAATNRQCVNTLDRNFEETVSRWLEE
FT                 SDDSDCDDNPEETEPIVSDHDTLSEQSATENYSDESSESSDPSDDQRRSNY
FT                 VYGKNQYKWAKAPPTRAVRTPRHNIIMKFPSTTLTTGAPKDPFSLWHLYFD
FT                 DEVLDHILLWTNAKIDCVRQKYSDKSKAELQNLDLDELLAFLGLLIYSSVF
FT                 KSNHENVNYIFATDGSGREIFKCVMSRNRFLMLLNCLRFDDFRTRKERLKV
FT                 DKMAAASFLFRKIVENSQKYFNLGTCATVDEQLVSFRGKCSFVVYMPKKPG
FT                 KYGLKIMSLCDARTSYFYNGYVYTGKGSDGDTMPDNDKKMMIPTQSLLRLC
FT                 KPIYGSNRNITADNWFSSIQAVEELMKRGLTFVGTLKKNKREIPQAFQPNK
FT                 NRPVGSSLYGFTKDTTLLSHVPKTNKAVLLVSSMHHSPAEDLTSQKPEIIS
FT                 YYNATKGGVDELDKKCSIYSCSRRTRRWPMCLFYRLLDISTVNAYVLQKSG
FT                 SDEAPVDRGIFLKELARSLVLKHMQKRAQNPRLPQELRLTTRRILGPDSPT
FT                 EEAVEAELGPKNRKTCRICPASKKRKTSHACYVCKRPICMQCCSQVCKHCC
FT                 ENL"
XX
SQ   Sequence 2472 BP; 744 A; 498 C; 517 G; 713 T; 0 other;
     cctttaacta acgtggtgcg gtctatctga ccgcgcgctt tcatcaacaa ttgcgattta        60
     gccagttccc tacccattat tgcgcccgtc ggctcagtag cttcgagttt agttgtgagt       120
     ggaccggcaa agcgtgtggt gttgttccag agcttctata acgtgagtga cgtccgtttg       180
     aaaataggtc gcggtcattt tgaccgcact acgttgtttg tgtaattttt tctgctgtga       240
     ctttccttac atattctcga tatcttccat ttcacagctt ttgaaatatg gaggaaccaa       300
     gtacttctac aggtaaagga tctgctgcaa ccaacagaca gtgtgtgaac actttagacc       360
     gtaactttga ggaaactgtg agcagatggt tggaagagtc agatgatagt gactgtgacg       420
     ataatcctga agaaactgaa ccaattgtga gtgatcatga cacattgtca gaacaaagtg       480
     caacagaaaa ttactctgac gaaagtagtg aaagtagtga tccatctgac gaccaacgga       540
     gaagcaatta cgtctatggc aagaatcagt acaaatgggc caaagctccg ccaacccgag       600
     ctgttagaac tcctcgccat aacatcatca tgaaatttcc atccaccacg ttgactacag       660
     gagctccaaa agacccattt tcattatggc atctctattt tgatgacgaa gttctcgatc       720
     acatcttact gtggacaaat gctaaaatag attgcgtcag gcagaagtac tctgacaaaa       780
     gcaaagctga acttcagaac ctggatttgg atgaactttt ggcgttttta ggacttctga       840
     tatattcttc tgtctttaaa tccaatcacg aaaatgtaaa ttatatattt gcaactgatg       900
     gttcaggtcg ggaaattttc aaatgtgtca tgtctaggaa ccgtttccta atgttgttga       960
     actgcttacg gtttgatgac tttcgaacca gaaaagagag gctcaaagtt gacaaaatgg      1020
     cagcagcctc ttttctcttc agaaaaattg tggaaaattc ccaaaaatat ttcaatttag      1080
     gcacatgtgc tactgtagat gagcaactag tttccttccg tggtaaatgc tcatttgtgg      1140
     tctacatgcc aaagaagcct ggtaaatacg gtttaaaaat aatgtccttg tgtgatgcaa      1200
     ggaccagtta cttctataat gggtatgtgt acactggaaa aggctctgat ggtgatacta      1260
     tgccggacaa tgataagaaa atgatgatac caacgcagtc tctgttgcga ttgtgtaaac      1320
     caatctatgg cagtaatcgc aacattactg ctgacaattg gttcagttca atacaagctg      1380
     tagaagagtt aatgaaaaga ggattgactt ttgttggaac tctaaaaaag aataagagag      1440
     agattccgca agccttccaa ccaaataaga ataggccagt tggttcgtct ttatacggtt      1500
     ttacgaagga caccactctg ttgtcgcatg tgccaaagac aaacaaagcg gttcttcttg      1560
     tctcttccat gcatcatagc cctgctgagg atttgacttc tcagaaacca gaaattatat      1620
     catactacaa cgccactaaa ggaggcgtcg atgaactcga caaaaagtgc tccatatact      1680
     cctgcagtcg gagaactcga cgttggccaa tgtgtttatt ctaccgttta ctggacatca      1740
     gcacagtaaa tgcatatgtt cttcagaaga gtggatcaga tgaagctcct gtcgacagag      1800
     gcatcttcct gaaagagctg gcccgtagtc ttgtgctgaa acatatgcaa aagcgagctc      1860
     agaacccacg acttccgcag gagttacgac taacgacccg ccggatttta ggccctgatt      1920
     ctccaacaga agaagcagtg gaagcagaat taggtcctaa gaacaggaaa acttgcagaa      1980
     tctgcccagc cagcaaaaaa aggaagactt cccatgcttg ctacgtctgc aagaggccca      2040
     tatgcatgca gtgctgttcc caggtctgca agcactgttg tgagaatttg tgatttgaac      2100
     gtctctgatt tttcatatgg tacttcttca agttaaaaac ttaacatttt ttgtttcatt      2160
     agttctttaa gaagaaatac aaaatatacc aaagtatgaa tgtcattatt agctaatgga      2220
     aaacgtataa atgtattagt gtacaatatg tgcagtaacc acttctgaat gcctgttcat      2280
     cagtaactat ttgatgttaa tgttctgttt tttcatgttt aattactttg tattaaagac      2340
     tctttcatat acaaaacaga gaatttcaga gttgttcata ttgttaacat tatacccacc      2400
     tataagtaag ggggtcagat tgaccgcacc acggtgttag tgtcccattt ttgccaccac      2460
     gttagttaaa gg                                                          2472
//
ID   piggyBac-3B_DAn repbase;    DNA;    INV; 1870 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   PiggyBac DNA transposon from fruit flies.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3B_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1870
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 291-291 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 15-bp TIRs. TTAA TSDs. It is quite
CC   similar to piggyBac-3_DAn, but is structurally different.
CC   Insertion of Helitron-N1_DAn-like sequence between nucleotides
CC   1070-1071 is masked with X. The masked sequence is :
CC   tttttatccccttgcagagggtattataattttggtcaaaagtgtgcaacgcagtaaaggagacatctcc
CC   gaccctataaagtatatatattcttgatcaggatccccccctgattcgatataagtatgtccgtctgtct
CC   gtcggtttctacggaaactagtctctcagttttaaagctatccttgaaacttcgcacacatccttctttt
CC   ccttgcaggaagtacataagtcggaacggccgggatcgggcgactatatcctatagctgccatataactg
CC   aacgatcgaaaatggcacaact.
XX
SQ   Sequence 1870 BP; 515 A; 283 C; 279 G; 491 T; 302 other;
     ccctctagtg cccaagaccg cctctagacg ggtaatgtta aaaataccgt tattttattc        60
     ttttcaatcc ttttgactcg gttttgcatt gtttctaatt tgggaaagtc caaaaattaa       120
     gtttgttgcc tttggaatac atactagagc ttgcgcaagc tgctgtattc atttgaagca       180
     gaaaatttgt gaaactcgaa tgaagtaatt attttgtaaa aagtgcaaaa tgtaaatatt       240
     ttttttaaat attataaata gtttgccggt gaaataaaaa attgtaccgt gttgttgata       300
     gtctcaagga cgcaaaatac gaaacccaca ctaaaaataa gctttcgtta gctttttatt       360
     gcatttataa aatatcccgt ctagaggcgg tcttgggaca attcgggaaa aaaaatttat       420
     aaagtgattt agaaagggaa gtaacttatg acatatttaa gtacgaataa ctgcttgaat       480
     aatgaattaa ttgaataatg ttaataagtt atcagctctt tccgacgtgg agattaaaaa       540
     attattaaat tctattgatt ttggcattga taccatgaca ttggtctatg ttgggtggag       600
     agatttgtgt aacttcaagc ggaagtccta ctccttttgc aaaatggttg tcaccctcaa       660
     gttcgattgc gtccaattca cctcaagcat agaaacgcaa acgtaaagcg cctgctgatc       720
     ataatactgc tcatgttaaa gaaagcacaa tagctgaatg tggatctgtt tggactatgg       780
     atccaaaagc ccgcttttca aaaagtgttg tggtaccaaa tgaacctatt catggacctc       840
     aagcatagaa acgcaaacgt aaagcgcctg ctgatcataa tactgctcat gttaaagaaa       900
     gcacaatagc tgaatgtgga tctgtttgga ctatggatcc aaaagcaccg cttttcaaaa       960
     agatgttgtg gtaccaaatg aacctattca tggatatatc tgcaatatcc tttaatgagc      1020
     ctgacctcgg agaacttcaa aatctgtata cgccattcaa gtgttttcaa xxxxxxxxxx      1080
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1140
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1200
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1260
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1320
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxgcaagggt      1380
     atatcaaggg ttcggctccg cccgaagtta gctttccttt cttttttttt attatactat      1440
     tattgaacat atcacttagc aaacaaattt gtatgctgtc caaaaggatc caatacttcg      1500
     ttttccacaa aaaatttaga aatttgcatt ttaatgacaa cagtaagttg ccctccaagg      1560
     attctgccga ccacgatcct ttatacaaaa tacgaccgct cgcgactcat ttcaatgaca      1620
     agtatcaata agttccgctg cgccaacgct tatctgtgga cgaacaaatg tgtgcaacaa      1680
     aagaattgat tacctaattt tttgttggcc tatcatccca aagccgcctc taggcggtcc      1740
     aaggatatag tcatataaaa ctcgatccga gcaaaaataa attttttttt aaaacaaaca      1800
     tttaattttg atacatactg aatccaaaaa taattttttt cttggaaaag aaaatttggg      1860
     cactagaggg                                                             1870
//
ID   piggyBac-3_DAn repbase;    DNA;    INV; 1551 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   PiggyBac DNA transposon from fruit flies.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1551
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 292-292 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 15-bp TIRs. TTAA TSDs. Inserted
CC   Helitron is excluded from the consensus.
XX
SQ   Sequence 1551 BP; 510 A; 274 C; 270 G; 490 T; 7 other;
     ccctctagtg cccaagaccg cctctagacg ggtgatgtta aaaatatcgt tattttattc        60
     ttttcattcc ttttgactca aaaattaagt tggttgcctt tggaatacat actagagctt       120
     gcgcaagctg ctgtattcat ttgaagcaga aaatttgtgc aactcgaacg aagtaattat       180
     tttgtaaaaa gtacaaaatg taaatatttt tgtttaaaat attataaata gtttgcctgt       240
     ggaataaaaa attgtaccgt gttgttgata gtctcaagga cgcaaaattt taaacccaca       300
     ctaaaaatat gctttcgtta gctttttatt gcatttataa aatatcccgt ctagaggcgg       360
     tcttgggaca attcgggaaa acaaatttat aaagtaattt agaaagggaa gtaacttatg       420
     acatatttaa gtacgaataa ctgcttgaat aatgaattaa ttgaataatg taaataacgt       480
     atttacctta tttatcagct ctttccgacg tggagattga aaaattatta aattctattg       540
     attttgacat ggtaccatgg cattgatcta tgttgggtag agagatttgt gtaacttcaa       600
     gcggaagtcc ttttgcaaaa tggttgtcac tctcaagttc gattgcgtcc aattcacctc       660
     aagcacagaa acgcaaacgt aaagcgcctg ctgatcawaa tactgctcat gttaaagaaa       720
     kcacaatagc tgaatgtgga tctgtttgga ctatggatcm waaagcaccg cttttgaaaa       780
     agatgttgtg gtaccaaacg aacmtagtca tggataaatc kgcaatatcc tttaatgagc       840
     ctgacctcgg agaacttcaa aatctggata cgccattcaa gtgttttcaa gcaagggtac       900
     atcaacttcg gctccgcccg aagttagctt tcctttcttg ttttttatga tactattatt       960
     gaacatatca cttagcaaac aaatttgtat gctgcccaaa wggatgtcaa tacttcgttt      1020
     tccacaacaa atttagaaat tctacaattc tttctacgaa aaactgacat caaaataaaa      1080
     tgccaataaa tattttattt tgatgtcagt ttttcgctac ccaaatgctc gttcattggg      1140
     tggagtacgc atttggaaca atacaaaacg caatgtcaag aaatcgcttt gaaaaaatat      1200
     gaggaaattt gcattttaat gacaacagta tagttgccct ccaaggattc tgccgaccac      1260
     gatcctttat acaaaatacg gccgctcgcg actcatttca atgacaagta tcaattagtt      1320
     ccgatgcgcc aacgcttatc tgtggatgaa caaatgtgtg caacaaaaga attgattacc      1380
     taattttttg ttggcctatc atcccaaagc cgcctctagg cggtccaagg atatagtcat      1440
     ataaaactcg gtccgagcaa aaataaattt tttttaaaac atttaatttt gatacatact      1500
     gaatccagaa ataatttttt tcttggaaaa gaaaatttgg gcactagagg g               1551
//
ID   piggyBac-3_DBp repbase;    DNA;    INV; 2308 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   piggyBac-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2308
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 620-620 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           736..2109
FT                 /product="piggyBac-3_DBp_1p"
FT                 /note="transposase."
FT                 /translation="MHLGPIKHTMSRNKFEEIKKYFSLRDESKRIQKGEPG
FT                 YDSLYRTRTFLDHLNQRFDSVPKQARLCVDEQMCSTKMRHHLRQYMPNKPH
FT                 KWGIKLFVLCDSFGYAYRFEIYSGAGDNVILPAHPDLGPSANIVVRLTKTV
FT                 ESFKNYIIYFDNFYTSLPLMVYLRAKGIYSLGTVRVNRIPNCKLPNDISIR
FT                 KQPRGFSTEYVGSSYGIDITNVLWKDNKAVCLLSTYVGIKPFLKLNANEGI
FT                 AKIARYDKKSKRHIEVDCPQIIREYNAHMGGVDLMDGLMGRYHIRAKTQDA
FT                 MTRIFYHLVDMAATNAYVLYRRIKKENKSTDKLLELPEFRESIAAGLVAYQ
FT                 SKRKRGRTFRDYDRKFPSPSSQRIAQPGWTMQSPSTPRSSKPSLTVGEKSK
FT                 HPVSDVRFDEVNHFPVWMSRDSGKRWCKHCKKSQTQCMCTKCNLHLCCTAN
FT                 KNCFFEYHNQKLE"
XX
SQ   Sequence 2308 BP; 750 A; 437 C; 480 G; 641 T; 0 other;
     ttctcattga agacaaaccg aaatggcagg tcgaatgcgt agacggttta aattatccga        60
     gttgaccgat gaacagttgc tggatttgtt caatgatgtt gaaacggacg aggaactctt       120
     gggtaactct agtgatgacg atgaagacag cttggattta gtagaatcac ttaacgcggc       180
     attagaggac gccgaaacca tttcatttat agacaatagc ggagataatg tcaaggaaaa       240
     cgtacagcag ctggaaaata cccaaaatcc tgtaaagaga cctcgttcac cactgccgac       300
     aattgaatat tcagtgtgta catctgagcc ttcttctggt ggttttaatt gtgccggtaa       360
     gaaatctaag tcataaagtg gtactcaaat aagtaattaa tttatgaaca ggtgttgaat       420
     taataaacaa ggtgccaact aaggtaacat ggaggcagca gtcgatgcag ttacatgtca       480
     acgacatagc ttttcgggga gattcttcac tcccagatag tataaaggaa cttgcaacac       540
     ctttgcagat tttctgttac ttcttcgatt cacagattat gaatatgatt gttgaagaaa       600
     ccattcggtc agcactaacg aaaaacataa acaatcaatt caaattcagc attgacgatg       660
     cccatcacta cattggaatt ttaatttaca tgtcaattta tcgatacccg aatataaaaa       720
     gctactgggg tataaatgca tttaggacct ataaaacaca ccatgtcgcg aaacaagttt       780
     gaggaaatca aaaaatactt ctcactgcgg gatgagagca agcgaatcca gaaaggtgag       840
     ccaggatacg attcactgta tcgcacgcgt acgtttttag atcaccttaa ccagaggttt       900
     gactccgtgc caaagcaagc acgactctgc gtcgatgaac aaatgtgcag cacaaaaatg       960
     agacaccacc ttcggcagta tatgcctaat aagcctcata agtggggtat taagctgttt      1020
     gtgttgtgcg actcatttgg ttatgcctac cggtttgaaa tttatagtgg tgcaggtgac      1080
     aacgttatct tgcctgctca tccagatctt ggaccttcgg caaacattgt tgtacgcctg      1140
     acaaaaacgg tagaaagttt caaaaactac atcatttatt ttgacaactt ttacacttct      1200
     ttaccgttga tggtttatct gcgtgctaaa gggatatata gcctaggaac agtgcgtgtt      1260
     aatcgcattc caaattgcaa gcttccgaat gacatttcga tcaggaaaca gccgagaggt      1320
     ttttcgactg agtatgtcgg ttcgtcatat ggcatcgata taacaaatgt gttatggaaa      1380
     gacaataaag ccgtttgctt gctatcaact tatgttggta ttaagccatt tttgaaatta      1440
     aatgcaaatg aaggaatagc aaagatagct cgttatgaca agaaatctaa aagacacatt      1500
     gaggttgatt gtccccaaat tattcgggaa tataatgccc acatgggcgg tgttgacctc      1560
     atggatgggc ttatgggtcg ttatcatatt cgagcaaaaa cacaagatgc aatgacacga      1620
     attttttacc atttggttga tatggcagcg acaaatgcgt atgttttata caggcgcatt      1680
     aaaaaggaaa acaagagcac agacaaattg ttggagcttc cggagtttcg ggaatcaatt      1740
     gctgctggct tagtggcata tcaaagcaag cgtaaacgcg gtcgcacatt ccgtgattat      1800
     gatcgaaaat ttccgtcacc atcatcccag cgaattgcac aaccaggttg gacaatgcaa      1860
     tccccatcca cgccgagatc ttcaaagcca tcgctcacag ttggtgaaaa atcaaagcat      1920
     ccagtttcag atgtacggtt tgatgaagtc aaccattttc ctgtttggat gagtcgagac      1980
     agtggcaaaa gatggtgcaa gcactgcaag aaatcccaaa cacaatgtat gtgcacaaaa      2040
     tgtaatttgc acttgtgctg tacggcaaat aaaaattgtt tctttgagta ccataatcaa      2100
     aaattagaat aaaatcatgt acgaaaaaat tgacttaaag ccccaagagt gccttgaggc      2160
     acttatttac ctttgttcga tttacaggta aactaagatt agtacacact tcttgaggtc      2220
     atatttgaaa ttaaaagcta taatttatcc caaaaaaaat tatccaacat agtttttttt      2280
     aatatttcta caattggggc ctagaggg                                         2308
//
ID   piggyBac-3_DSuz repbase;    DNA;    INV; 2415 BP.
XX
AC   .
XX
DT   19-JUN-2021 (Rel. 27.01, Created)
DT   19-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2415
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 124-124 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. TTAA TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(474..1688,1634..2146)
FT                 /product="piggyBac-3_DSuz_1p"
FT                 /translation="MNAQLFYGSLQYVNEIDDPFLSDDDSIADSEDEVVEN
FT                 QKIQEEDVYISETDESSSDDICEKPCISKAKPKPVPRKKTEAPIWKAGHLP
FT                 PYLNETFPFQGNTNLSTCINELETPADFFNFFFNDYLMNFLVDQSNLYALQ
FT                 VDINKPAGITRNEVDQFIGMVIYMSLVQLPSSRLYWSSTLGQEIIHGTMSC
FT                 NRWETIKRFLHFINNNDMKLAGEAGFDKLFKIRLVLDKIRNQLLLVPKEEH
FT                 LVVDEQIIPTKCRHHLKQYNPAKPHKWGFKNFVLSGVSGFSYDFDIFAGAQ
FT                 SDTYPDGAPNLGVNYKLFFDNWFNSPNHEVYLMKNGILALGTIRINRVPNS
FT                 KMPTEKELKSQGRGSMVEKVAIIDGVQLGLVSWFDNKVVNILSSYVGSNPV
FT                 TNDSVRKTKSMLRGKQSCYKRFSKKDKKYVEINSPKAVDVYNNYMGGVDLL
FT                 DSLLGLYRIQLRSRKWYKKIFFHMIDMCVVNSWILWRRKSDQYMPLLDFKL
FT                 LIAEHLCKAGKVKKRGRPAMTPTSSPCTSREGTPTTSKRRKHQEIPLKFCS
FT                 GGPYWAFSHLEKAKATLQKRLFFPLIHLL"
XX
SQ   Sequence 2415 BP; 798 A; 448 C; 445 G; 720 T; 4 other;
     ccctctaccg catacaaagc catatatggc ttctcaattt caataatttt tttttgcaat        60
     aaaacggtac atatactaaa ccgtttgtta tcacttattc tctttcaact attttctgtt       120
     agatgtctat actcagaact tctttgtgtt gccttatctc aagtttcaat cagttttgtg       180
     ctcgcgtctc aagcaaacta acgaaagtga attgtggtga aattaaaatt aaaattacta       240
     cactaaaaac agttttatca ctgaaaagta ttttttttct aagagaatat aaagttttcg       300
     ttcattaaaa aatagaattt gactataggt gagcatcaca tatactattc tatgcaaaaa       360
     actgtggacg ccatatatgg ctctatatgc agtaacgcgt gcatgtttat attctatgta       420
     catatgcatt attagcatat tagcttaaca attgcacttg ttttctttta gaaatgaatg       480
     cacaattatt ttacggtagt ttgcaatacg tgaacgaaat cgatgatccg tttcttagtg       540
     atgatgacag catagccgat tccgaagacg aagttgttga aaatcaaaaa atccaagagg       600
     aagatgttta tatttcggag accgatgaga gtagttccga tgacatctgt gaaaagccgt       660
     gcatttctaa agcaaagcca aagccagtgc caagaaaaaa gacagaagca ccgatatgga       720
     aagctggtca cttaccaccg tatttgaatg agacctttcc atttcaaggg aataccaatc       780
     tttcaacttg tatcaatgaa ctggagacac cggcagactt ttttaatttt tttttcaacg       840
     actatctgat gaatttcttg gttgatcagt caaatctata tgcactccaa gttgatataa       900
     ataagccagc tggtattact cgaaatgaag tagatcaatt tataggcatg gtcatataca       960
     tgtcgttggt acaattacca tcttcaagac tctattggag ttcgactctt ggtcaagaaa      1020
     ttatacatgg cacaatgagt tgcaaccgat gggaaactat aaaacgtttt ctgcacttta      1080
     tcaataataa cgatatgaag ttagcagggg aagccgggtt tgacaagcta ttcaagattc      1140
     gactggtgct ggacaaaatc cgtaatcaat tactgctcgt acctaaggaa gaacatttgg      1200
     tggttgacga gcaaattatt cccacgaaat gccgtcacca cttaaaacaa tataatccgg      1260
     caaaacctca caaatggggc ttcaaaaatt ttgtcttgag tggagtatca ggttttagct      1320
     acgactttga tatttttgcg ggagcccaaa gtgatacata tccggacgga gcgcctaatt      1380
     tgggagtaaa ctacaaatta tttttcgaca attggttcaa tagtccaaat catgaagtct      1440
     accttatgaa aaatggtata ttagctttag gtacgataag aattaatcga gtacccaatt      1500
     caaagatgcc aactgaaaaa gagttgaaaa gccaaggacg tggaagcatg gtcgaaaaag      1560
     tagctattat cgatggagtt cagcttggcc tcgtctcttg gtttgacaat aaagtagtca      1620
     acattctttc tagttacgtg ggaagcaatc ctgttacaaa cgattcagta agaaagacaa      1680
     aaagtatgta gaaatcaact ctcctaaggc agttgatgtt tacaataact atatgggtgg      1740
     cgttgactta ctggattctt tacttggact ttatagaatt caattgcgct caagaaaatg      1800
     gtataagaaa atattttttc acatgattga tatgtgcgta gtgaattcat ggattctatg      1860
     gcgtcgtaag tcagatcaat atatgccact cctcgatttc aagcttttaa tagctgagca      1920
     cctgtgtaag gcaggaaaag taaagaagcg cggacgacct gcgatgactc caacttcatc      1980
     cccgtgtaca agtagggaag gtactcctac taccagcaaa agacgaaagc accaggaaat      2040
     tccattgaaa ttctgttcgg gaggaccata ttgggcattt tcccacctgg aaaaagcaaa      2100
     ggcaactctg caaaaacgat tgttctttcc gctcatacac cttttgtgag aaatgcaatg      2160
     tatttctatg ctacaacgac aaaagaaact gtttcaccaa ctttcacatg aagtaatgta      2220
     tacatgcata cagagccata tatggcaaac tctggaatca gctgaatgca tacaaagcca      2280
     tatatggccc catttccccc accccaaact atgcccccwm aaaaaaaaag tccaaatata      2340
     tattattttg gmctwagtaa acacataatt acattcaaaa aatgttttcc tttattattt      2400
     ctatgcagta gaggg                                                       2415
//
ID   piggyBac-3_FoCa repbase;    DNA;    INV; 2937 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2937
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2499-2499 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TTAA TSDs. 12-bp TIRs.
XX
SQ   Sequence 2937 BP; 903 A; 592 C; 584 G; 858 T; 0 other;
     ccttttaaaa acggattcca ccaataaggt ggagggcgat ttcgatctct tggcgacgga        60
     ctacaccaat aaggtgtagg ccaaattttt cgccttggcg acggactaca ccaataaggt       120
     gtaggccaac tttttctcgt tgacgacgga ttccaccaat aaggtgtatg gttacagaat       180
     tccgttgaga ccgggctaca tcaataaggt gtaggaaaaa aataaaaata aagtgacgaa       240
     gaaaattttc tcagctgctc cattctttcc tccttattta tcgttggact ttcttcacgc       300
     ttgaactgca atttttgagg ggagagctgt aattggggga gtaattgcat cgtgctgaac       360
     atacagccag ccaaaattcc agaaaagata ggaaaatatc cagtaagtgt tgtatatttt       420
     gttgtaatat gtatgtgcat aaatgttaaa tattcctcga atatcgactc aaatttattt       480
     cacgtttcaa caggtactct caactttcgg aaatcatggc tatgcaaata tcggaaggtg       540
     atgacgacga cctctactac gacgctgctt cagaagatga ttttgaagct gaggacgagt       600
     ctgacagcga tattgacgag gtttaatatt cttttcgttt gtgaccattc ctcggattat       660
     gaccttgctc tacttgttag gatgaaacca taaactggga tgaagaattt cgtccacccg       720
     tgcataattt ccaaggtcca gatgatcaaa taaaggatga ttttcgccac cactttggaa       780
     catctctaga cattctcaga aaattcattg atgactccat ggtcgaaaag atagctgtgg       840
     agtcgaacag atacgctgag caagtgaagc gaacctctcc ccgtgcattt attggttgga       900
     ccccagtcac tgctgctgat atctggcgct ttctatctct tattttggcc atgacgcttg       960
     ttaaaaaatc atcttataaa gaatactggt ccacagaccc cttagtttcg accacatttt      1020
     ttccttctgt catgagtcga gataggtaat cttatataaa tatgtacata tcaatatatg      1080
     catttatcac acatttttca ttctgtacta gatttatatc cattttgaga gctctccact      1140
     tcgtaaataa tgaaaccgtg ccacaaacca accaagatcg cttcattaaa ctcggaagtt      1200
     ttatgaccga cctgctgatg aattttcaac gcgcaattca tgccggaaaa gttctatgta      1260
     tagacgaaag tttaattcca tttaaaggca ggttatcctt taaacaatat aacccgaaaa      1320
     aaaggtcaag atttggagtg aagttgttcc tcgtcgtgga tagcgcaatg caatttgttc      1380
     tcgatgttct tccatatcaa ggcaagagca cgcagataac tgaccgctcg tggatttctc      1440
     ttgttggatt cgggggagcc gccgttctga ctcttttgca gccatactta gatgctggtc      1500
     gtcgcatcat aatcgataac tggttccaca gcctcaaatt agcaaggatg ttgaaagatc      1560
     gtctcacgta tgttttgggg actgtacaaa aaagacggaa aggaattcca agaggtgcaa      1620
     ggatgactcg aaaactcaga aaaggagagg ttgaaacctt tagtgatgga gacgttttga      1680
     tagaaaggtt ggtgaaatat ttctatttat tttttttcaa aaatttagaa cctctttgta      1740
     catacaagat ggcaggacag gcgggaagtg cttatcctca acactttcat gccccatgga      1800
     atgacggaat ggccctccac caaccccaac aaccaacgaa tgaagccaga tacagtttta      1860
     ctctacaaca agaccatggg tggggtggac aatgtcgaca aaacgataaa acccaaccaa      1920
     agtctccgca agtcatacaa gtggtataaa aaggtcgcat tttatttggt cgagctctcg      1980
     gtatataatt caatgattat gtacaatacg acccaaaacg atcaagttgg attccgccgt      2040
     cttaattacg aagcgttcgt caaatcaata atccacaaca ttctcacgaa gttccccgta      2100
     gcacggaagc caagaggaag accttcccaa agccgtgtct cagtaccctt agcgaatatg      2160
     catattccag aacgagttat gaaagaaaac ggttacccaa gcaaatccga ttgtttccac      2220
     tgcaaaacaa aattggggaa gaggacgatt acgcagttca agtgccttgc ttgcgagaaa      2280
     cgtttgtgca ttggtagcag cgtcttcaac tgtttcaaat tttatcatga cgaaatggta      2340
     agtcgagaac atgctgttta tctttgctga gaatttatgt agtgtattca caaatagttg      2400
     cagttatcgc agcagcaggt atcgcagcaa gtagtgccac tagcggatcg caacgagtca      2460
     cagaacactg gacaaaattc accacgttac gattacaata acttgtttga aatatataat      2520
     gcatcccaaa atcatgatag taatgtcatc aatgatgatg atttactgtt cgtttagtta      2580
     attgttgtac tactatgaaa atcaaatccc actgtcatgt caaaaattta tagtgtgtgc      2640
     catttggctc agttatattg ttgatttata attgaaattt catgttcaaa aagtgtataa      2700
     tgttctaatt attgttcgcg aatcagttct tggttcgtaa taaatcaaaa ctgcataagc      2760
     agaatattca aaatcggttt gcattaattc agtccccaac tgattttatc accgccccac      2820
     aactcggtct caatggtatt ttgcacccca gaaagtccgc cctcaagagc aatagaaacc      2880
     attttaaatt ccgtttttaa atggtatcca ggtcaaaatt aattagtttt tataagg         2937
//
ID   piggyBac-3_LMi repbase;    DNA;    INV; 2403 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2403
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3329-3329 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           14..1783
FT                 /product="piggyBac-3_LMi_1p"
FT                 /translation="MPVYIRVVIATHQVRCPYIYMGTLSFSYAAPVFKLFS
FT                 VFLCLYMYRSLLGLVITLISTMELLYCVVLCCSLATVYRMASSSYVGLSER
FT                 EVSALNELFSTLESEDEDPSFNYVDSDISDDETPAHFRCDNAHLRDNSDAA
FT                 NAARRSAPSPPAEQTEEMFHWVNSEFHPKAHKFSETSSGFKDVFCCVNDAS
FT                 EIIDYFECFVTPELTGKIAFETNRYFQYLISNTDPAVSSRLRKWKDTNSKE
FT                 IYLFLAVTMLISRNKKLSLNDCWSTDKLLHTPIFGETMPRDRYLLLLRLLH
FT                 FCDNEQQEPNNRLYKIDMVLNDIRKVCSENFYPFENLCIDESLVLFKGRLS
FT                 FKQYIKTKRHRFGVKFFVIADVKTDYILDFIIYTGASTRLSVFDKTLGISG
FT                 SVVLQLMQPFLGKGHSLYTDNWYTSPLLAGFLHRNQTNLCGTVRSDRKKMP
FT                 AIEKPQVKGESRSKNCGHIMIVKWLDRKVVNMLTTIHADTMVPTGKTNRKT
FT                 GEPVMKPLCVQEYNKNMGTIDKIDMLLSSVECLHKTMKWYKKVFFHLIDFA
FT                 VVNSHAVYKLKTGSKLPLAKFQLELIRQLIKKYGNESRERKND"
XX
SQ   Sequence 2403 BP; 763 A; 452 C; 486 G; 702 T; 0 other;
     ccctttcact gctatgcccg tatatatacg ggtggtaatt gctacacatc aggtgcggtg        60
     cccgtatata tatatgggca ccctttcatt ttcgtatgcg gctcctgttt ttaaactgtt       120
     ttctgtattt ctttgccttt atatgtaccg ctctctgttg ggactggtta taactctaat       180
     ctcaacaatg gagttgttgt actgcgtcgt tctttgttgt tcacttgcta cagtgtacag       240
     aatggcatct tcgtcttatg ttggtctaag tgaaagagaa gtatcagctt tgaatgagtt       300
     attcagcacc ttggaaagtg aagatgaaga tcctagtttc aattacgtag acagtgatat       360
     aagtgatgat gaaactccag cccattttcg ttgtgataat gcgcatttac gtgacaattc       420
     agacgctgcc aatgccgccc gccgcagtgc gccttcgccg cccgcggaac aaacagaaga       480
     aatgtttcac tgggtaaaca gtgagtttca tccaaaagcc cataaattta gtgaaacgag       540
     ttctggtttc aaagacgttt tttgctgtgt aaacgacgca tctgaaataa tagattattt       600
     cgaatgtttt gttactccag aacttacggg taaaatagct ttcgagacga acagatattt       660
     tcagtacttg atttctaata cagatccagc agtgtcatct agactacgta aatggaaaga       720
     cacaaactcc aaggaaattt acttgttttt agcagtaaca atgctaattt ctaggaataa       780
     aaagctgagc ctgaacgact gttggtctac cgataaatta ctgcacactc caatttttgg       840
     cgagacaatg ccgagagacc gctatttgtt gctacttagg ctcctgcatt tctgtgataa       900
     tgagcaacaa gaaccaaata atagactgta taagatagac atggtgttga atgacattag       960
     aaaagtgtgt agcgaaaatt tttatccttt tgagaatctt tgcatagacg agtctttagt      1020
     gcttttcaaa ggacgtttgt ccttcaaaca gtatataaag acgaaaagac atagatttgg      1080
     tgtaaaattt tttgtgatag ccgatgtcaa aacggactat atcttagact ttataattta      1140
     tacaggtgca tcaacacggc tgagtgtatt tgataaaaca ctgggaattt ctggctctgt      1200
     tgtcttgcaa ctcatgcagc cattccttgg caaaggtcac agtctataca cagacaactg      1260
     gtatacgagc ccacttcttg ctggtttttt gcacagaaat caaacgaatc tgtgtggaac      1320
     agttagaagt gataggaaaa aaatgcctgc cattgagaaa ccacaagtaa aaggagagtc      1380
     acggagtaaa aattgtggac atattatgat tgtgaaatgg cttgaccgaa aagttgtcaa      1440
     catgttgact actattcatg ctgacacaat ggtaccaact ggtaaaacaa accgaaaaac      1500
     tggagaaccg gttatgaaac ctctgtgcgt tcaagaatat aacaaaaata tgggaaccat      1560
     agacaaaatc gatatgctgc taagttcagt tgaatgttta cataaaacaa tgaagtggta      1620
     caaaaaagta tttttccatc ttatagactt cgctgtggtg aattctcatg ctgtgtataa      1680
     attaaaaaca gggtcaaagc taccattagc caaatttcaa ttagaactga taagacagct      1740
     catcaagaag tacggcaacg aatcgagaga aagaaaaaac gattagggtc tcttctgatg      1800
     acttgcctac gagactgaca gcccgccact ttccacagtt agttccaccc atacctggag      1860
     gaaaacaaaa ccctcaaaga tattgttacg tgtgttccaa tactcaactg gctccaaaaa      1920
     gaagaaggga cacgagatat caatgtacag agtgcaatgt cggtttgtgt attatcaatt      1980
     gttttcaaaa gtatcacaca ttgcagaaat tctaagtaaa tgtgtttgta aaactgtaaa      2040
     aaataattat tactctgtgt gttctaatac gcagcttggc tcaaaaagaa aggacgtgcg      2100
     atatcaaagt acagagtgca ctgtcagttt gtgtattatt aattcttttc aaatgtatca      2160
     ttcgttgtag aaattcctag taaatgtttt tgtaaaaaaa tacatattac tttgtcatat      2220
     ctagccgctc gtcagtgtaa tgtctttctt ttgacgtgaa aaaataaaag aaaaataatc      2280
     gaccgcgcgt aacaccgctt tcccgacgcc gcagcggaaa aaaaaaaatc gactgcgaga      2340
     aactccgttt ctggcgccgc atacgggtgt tgcacacgct ttcccgacgc cgcagtgaaa      2400
     ggg                                                                    2403
//
ID   piggyBac-3_RPr repbase;    DNA;    INV; 3090 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3090
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3385-3385 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(854..1339,1317..2264,2298..2711)
FT                 /product="piggyBac-3_RPr_1p"
FT                 /translation="MAGKILSEEEILKLLTVSDSEEEFSSSEEEYEEPKPS
FT                 TSKEPDAPRPSTFDDQPRPSTSKEPDAPRPSTFDDQPRPSTSKEPDAPRPS
FT                 TFPPSPLAISTDSESFDETDEETAGRQTDYENYFSWKVTDLNPTIHKFDGT
FT                 NSGPKIKVDSETQFIIISLLFLLLFHYFFYFRINKNHYIETNNYGNLCIGK
FT                 VSRISSRLKRWVDTDTDEMYCFLAISMLMTRIKKLKYSEYWTKDTLLETPI
FT                 FTKIMARDRYLLLLSFLHFSDNTLTNITNDPLIKIRRVVDIVRGKFKTCFY
FT                 PFQKLCIDESLTLFKGRLSFKQYIPSKRSRFGIKTFVLCDCQTNYILDFII
FT                 YTGASTDVNIENKDLGKSANIVSTLLDPYKNKGHTVYVDNWYTSPILFQWL
FT                 HQNRFNACGTVRKNRKEMPSMQGNLKKGELTFRASKMLLAMKWCDRREVWM
FT                 LTTCHDASMVESNKTDFVTGLKKMKPACVIDYIDTVNCGNYRKSSKWYRKY
FT                 FFHILDLRIMNAYILHKITTRKKMPFADFQLSLIREILENHHKERKKSGRR
FT                 SSESAPFRLTERHFPKLIPDSPKVKSPRKTCAVCKKAQKRKDTRYYCDKCN
FT                 EGLCVVPCFEIYHTQKTF"
XX
SQ   Sequence 3090 BP; 1026 A; 500 C; 533 G; 1031 T; 0 other;
     cctcttgagt gctaactact catatatgcg gtttgacttg acgtgctggt ggtactaaca        60
     ccccattaat gcggtgccgg ccgactttct cctggtacta actacccatt tatgcggttg       120
     gtgctttttc gtttgtttac tattcccagt taaatgtgga tgaattttta atgcttccag       180
     cgacatctat acattctata taatatttct aatgtactac aatgataata gatggcattt       240
     tttgtgtgtg tgtgttgtta tttttttaat tctcccaacg acatctattg acattttttt       300
     tgttatattt ctattagttt tcaattctcc agcgacatct atacaatcta tggtatcgac       360
     aatattttta atttactgga atggcaatag atagcaactt tgtgttttta aattttattg       420
     tttcgtacac agactgattt ttccactatc tactagaacc ctatttttcc tttttagatt       480
     tagtttttct acctgatcct ttttttttat tgtatggttt atgtttttac gactatgaac       540
     acatgttaag ggtggataac acccttgcat acatattttt atcactattg cgtttgcttt       600
     cgttcaagta ccaactattt gcaatttttt agttacactt tttgaatttt tagtagttat       660
     tatttgcgtt tatttattag tttctattgc gttattttta gtattattgt tttaattttt       720
     atttctagtt attcttagaa gttcggatag tttattatag tttttacttt gaatttattg       780
     actttagtga gtttgaattt ccgattattt tattacagtt cagattttag tttatttctt       840
     cagtttagaa actatggctg gtaaaatact aagtgaagaa gaaattttaa aacttttgac       900
     agtaagtgat agtgaagaag aattttcttc ttcagaagaa gaatatgaag agcctaaacc       960
     atctacatcc aaggaaccgg atgctccgcg accatcaact tttgatgatc agcctagacc      1020
     atctacatcc aaggaaccgg atgctccgcg accatcaact tttgatgatc agcctagacc      1080
     atctacatcc aaggaaccgg atgctccgcg accatcaact ttccctccgt ctccgcttgc      1140
     aatttcaact gattccgagt cttttgatga gactgatgag gaaacagcag gtaggcagac      1200
     agattatgaa aattattttt cgtggaaagt aacagacttg aacccaacca tacacaaatt      1260
     tgatggcact aattctggtc caaaaattaa ggtagatagt gaaactcaat ttataattat      1320
     ttcactactt tttttacttt aggattaata aaaatcatta tattgaaaca aataattatg      1380
     gtaatttgtg tataggaaaa gtgagtcgga tctcatccag actaaaaaga tgggttgata      1440
     ccgatacaga tgaaatgtat tgttttttgg cgatatcaat gctcatgact agaattaaga      1500
     aattaaaata ttcagaatat tggaccaaag atactcttct agagacgcca atatttacaa      1560
     aaataatggc aagagacaga tatttgcttc tgttgagttt tcttcatttt agtgacaaca      1620
     ctctcaccaa tattacaaat gatcctctaa taaaaattag acgagttgtc gacattgtca      1680
     gaggtaaatt taaaacatgt ttctacccgt tccagaagtt atgtattgat gaaagtttaa      1740
     ctttattcaa aggtagactt tctttcaaac agtacatccc atcaaaacgg agtagatttg      1800
     ggataaaaac cttcgtactc tgtgactgcc aaacaaatta cattttggat ttcattatat      1860
     acacaggagc ctcaacagat gtgaatattg aaaataaaga tttgggaaaa tcggcgaaca      1920
     ttgtttccac tttgctggat ccttacaaaa acaaaggcca tacagtgtat gtggacaact      1980
     ggtataccag cccaatttta ttccaatggc ttcatcagaa caggttcaat gcctgtggaa      2040
     cagtcagaaa aaatagaaaa gaaatgcctt caatgcaagg aaatttgaaa aaaggcgaat      2100
     taacctttcg ggcatccaaa atgctacttg cgatgaaatg gtgcgacagg agagaggttt      2160
     ggatgctgac aacctgtcat gatgcatcaa tggttgaaag taacaaaact gattttgtta      2220
     cggggttgaa aaaaatgaag cctgcatgtg taattgatta tatataaaaa tatgggtgca      2280
     gtggatatag cagataggat actgtcaact gtggaaacta tagaaaatcg tctaaatggt      2340
     ataggaagta ttttttccac atattagatt tgcgtataat gaatgcctat atcctgcata      2400
     aaatcacaac gagaaagaaa atgcctttcg ccgattttca actttctcta attagagaaa      2460
     tcttagagaa tcaccacaaa gaaaggaaaa aatccgggcg acggtcatca gaatccgcac      2520
     catttagatt gacagagaga catttcccaa agctaatacc tgactcgcca aaagtaaaaa      2580
     gcccacggaa aacctgcgca gtatgtaaaa aagcgcagaa aagaaaggat actagatatt      2640
     actgtgataa atgcaatgaa ggactgtgtg tggtcccatg ctttgaaata tatcacacac      2700
     aaaaaacatt ctagttattt ctatttcata agacatattt tatattttgt aattttttgt      2760
     cacaaaaacg taaaaataaa ttattttaaa aagtatttct ttctagctat cataatccca      2820
     aaacattagg ctaattaaac ataattaaaa gcattaatta ttgaaaaaaa ttgaataaat      2880
     gcacaggaaa tataatagtt attaattata aggagattta aaaagattaa aacccttaaa      2940
     gaaggggatt taagctttaa aatgcttgta aacaagtagt ggggaaaaca accttgagtt      3000
     aaaaagaatt cagtatggtg gggaatgtag ccggctggat tgttagtact gtgtgcactt      3060
     taactctcta caaactcagt aaagaagagg                                       3090
//
ID   piggyBac-4B_LMi repbase;    DNA;    INV; 3148 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-4B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3148
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3219-3219 (2014).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 3148 BP; 940 A; 626 C; 722 G; 860 T; 0 other;
     ccctttaact gctctggacg tgttaacacg cgcctttata cctgtcccac tgtgctctag        60
     acgtgtttac gtgcaccgcg ctccttcctg gtgctctgga cgtgttaatg cgcgccgccc       120
     taatggctcc tgtatgcccg ggtttagaca cgctgccgct ttgtcccctg tgtgctctgg       180
     acatcttaac gcgcagagtg gtatttccgc tgagcgctta gcacctgctc ggcgttcggc       240
     cagctcagtt ggagtctcgt gtgagtttgc tgctgtagac ttgtcttgcg ctgttcgtct       300
     tagttttttt tctttttttt actggatact gatgacgtta ccgtttttgc gaagaaaatg       360
     tacagatgag gaaatcttcg agatgctcac tagaagcgac agtgaaaatg aactgttcga       420
     ctgtgatgat agtgacgact cttcgacaga atctcggagt aacagtcctg tgccacattc       480
     atcaggagct ataacagaac catctgtttc aagaagagat gaaaatcctt cagaatctga       540
     tgaatctgaa actgagggag agatgccagt gaaaagagga cgctttagta acacgtttga       600
     ctggaagaaa aatgattatc gcccgtttgt gcacgcattt gacgattcag cttctggaca       660
     caaatgtgta ttagggccag attcaagcat tctgttattt ttaacggaat gtctgatgaa       720
     atttgttgca gacgaaacaa acagatttta cttatacacg aagcaaaata cgccagaatc       780
     ggagcattcg cgtttgtcaa ggtggaaaga tacggaattt gaggaactgt attctttcgt       840
     tgctgtttgt ttgctcatgg ctcgagtgaa gaaattgaaa attagcaact attggtccag       900
     agacatactc ttgaacactc caattttcag cgaaataatg tccagggacc gcttcctctt       960
     aattctaaga atgcttcatt ttagtgataa ctctgccagt aatgaaggag acagactatt      1020
     taaaattaga aaaattgttt atacaggtcg tacaacattc cacagcgcat ttcacccgta      1080
     ccaaaagctc tgcattgatg aaagcctctt gcttttcaaa gggcgattgt ctttcaaaca      1140
     atttattccg tccaaacgaa gtaggtttgg aattaaaatg ttcgtgctgt gcgactgtcg      1200
     gactggctac atactggact tcattgtgta tacaggcacc acgactgaaa ttggctttca      1260
     caatctgggg aaaagtggcg acatagtagc gacactgcta aaaccatatt tgcaacgggg      1320
     acacacgctc tatgtcgaca actggtattc cagcccagac ctgttcttct ggcttcataa      1380
     ccatggtacg aacgcatgtg gtactgttcg aaaaaacagg cgtaacttgc taaaattgca      1440
     ggacaatctg aaacgtggag aagtacagtt tatgtccacg atacaatgct tgccatgaaa      1500
     tggtgcgata aaagagaagt gtggatgttg accacctgta atactgcaga aatgtgtgat      1560
     atggagaaga cagacagaaa gactggtgaa agacgcatga aaccacaatg tgttgcggat      1620
     tacaacgtga gtatgggggc agttgaccgc actgacatgc tactgagttc agttgaatca      1680
     gtgcgaaaga tggtaaaatg gtacaagaag ttcttcttcc atgtattaga tctgtgtgtt      1740
     ttaaatgccc atgctctcca cagagaagta acagggcgaa aaatgccaat agcagaattt      1800
     catctgtctc tggtaagaga acttgttgaa acttacgcca cagaacggag gaaagctggc      1860
     agagggaggc gctctgacga cgagaatcct ctgcgattta ccggaaggca ttttcccaat      1920
     ataactgaga acgagcactc aaagaaaagt aggccaatgc gaagacgtgc agtttgctcg      1980
     aagcagaaag tgcgccgaga aaccaggtat gagtgcaaaa cgtgcaatgt acctctatgt      2040
     gtggtgccat gtttcgaggc ttatcataca aaaaagtata tataactgtc gattatcgca      2100
     ctgcaaaatg aaatttttta agtaaatgaa agcaaaaata aataaaaatt aaaaaaggaa      2160
     aaaaatgaca aaaaatatat ttttaacttc gctagtgccg gtccaaagcc cggatcaaaa      2220
     aggaggatgg aaaatatatt cagaaggtgt gaacattagt aatgtttaac gatcgtcaaa      2280
     acaatactga ctgagatata gtcacttgta tggcttgatg cgcaaatttg aactaaattt      2340
     actcggtatg ggaaagaggt acatgaatga aactttatat ttgagaacct tgtgttgtta      2400
     ggttactaca taccaagttt cactttcgtc atactttcag tccctgagat ataagaagcc      2460
     gaacttcgag atttttttct ggcgccgatt ttttatggcg aatttgctta atattttcgg      2520
     ctgaatatgg ctcgtaaaat tcttttcttt attattctta agataacgaa tatagttgta      2580
     caaggtagcc aattttaata tattttaaca aaatattaac cgagatataa cagttcaaat      2640
     tccccagaaa ttcacgcgca ctctgcgcaa cgtcgcgcat gaagtcaaac aagtgactat      2700
     atcacatcca gtataacatc gacgattgtt aaacttcacc aatgttcata gtggacatat      2760
     gagaatgttc atataaaatt acttcgaaat ccgttttagt cgatcgggaa aatgttccga      2820
     aatttattta tttgacgtgg aatgacccat aagcagtttc aatgcacgta ctgtctgttc      2880
     agtaattcat ctgcagtaat tcttctgcca cagaggaagt atgcagatgg cgtacattgt      2940
     gtgtcggtga tcacactcag aaggcgacac agccgcgacc gccctggctc caaaaatatt      3000
     cagcacaggg caaggtcggc caagtgatgg gctgagcagc aggccggcag gtcgatcggg      3060
     aagcacaata gcgcaggtgc ggggattagg cggcctcaag ggcggcgtga cccaacgcga      3120
     ccgaatgctc ggtggcagca gctaaggg                                         3148
//
ID   piggyBac-4_FoCa repbase;    DNA;    INV; 2608 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2608
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2500-2500 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. TTAA TSDs. 9-bp TIRs.
XX
SQ   Sequence 2608 BP; 842 A; 522 C; 509 G; 733 T; 2 other;
     cccttagcca tgggagaccg tttaaaaacg ttttggagtt tttgttttaa tgcggaaagc        60
     cgtgaaaagc cgttmataaa aaaagtgtct gccttcgggg tcaacggctt ttcacgtttt       120
     cacgtttcca tgtcagatgc gggacaacgg atatttccgt gataaawttt ttttagcaga       180
     ttcgggaaac gtcaaaacac gttggcacta aaaattaaac taaaataaat tagtaaatta       240
     attaaattaa tttaaattaa taaattcaaa acgaattcac acatcacaaa catccttatt       300
     tgtggaaaat ggatccaaat aacgaaaatt acttatacaa tatgctgatg gatcgcgatg       360
     tcaattcgga agaacaagtg gggtcaccgg acatgttcgc agatgttgaa gaagatccag       420
     taagcagtga cgaagactgt gaaaatagta agtatgcact aatcgtcata ttcaaacaaa       480
     cttcacagat cacatccgaa ttttcaggtc cactattcac aattagtgac ctgcaaaatg       540
     aagacacgag cgacgaaagt gaccctggcg aggacgatga tgaatctgct gaccctgcct       600
     tggcgtcacc aggtacgaaa ttttgattct actttcccgt ttgcatatta atatattgaa       660
     atttttgaca cctagcactc actgccggta ctccatttgg attgacggga tgcactgcgc       720
     cttggcaatg gcaaactgat ccgaatttta aagcagatgt ttccgatttt gacgacacga       780
     taagcggttg gacaattcca ttttcaagaa cagaaacgga actggacctc ttcctcaaac       840
     tatttaccaa agaaattagg caagaagtga tccaacaaac caacacgtat gcggaccaga       900
     ctggagattg cagcacacga cgatggagca actggagaga gcttgacgag caagacttat       960
     tgaaactaat agctgtgcga atgctgatgg gagttactag acttcctgaa atgaagcaat      1020
     attggtctag ggatccactt ctacaatatc ccatcattac gagaattatg aagcaagatc      1080
     gttacttcga aatattgaag tatttacact tttcggataa tactcagcca aatggagaca      1140
     aattgcaaaa aatggggaag atttgggacc tttgtatgca gaactttcaa aatactctcc      1200
     gggctcacaa gaacatatca atcgatgaaa gtctcatgct ctataaagga agattgtcct      1260
     tcaagcagta cataccaagt aagaggtcgc gatttggagt caaaattttc tctatagtgg      1320
     acgaaacaac aggatttgta ctattcagca tgatctatgt tggaaaggat gatcgacttc      1380
     ttccggatat cagaacgttt ggatacggtg gtgcaatagt ccttaaatta ctggaaccgt      1440
     atttaaataa tggtcatcat ctctactgtg acaattactt cacatctccc aatttggcga      1500
     aatatctatt ggagagaaca acttacatat gtggaacact tcgaaagaat aggaagcaca      1560
     ctgacccacc accagtacga ggtccgaaca aaatgaaacc aggagaaata atcgttaaat      1620
     catgtcaagg agtaatgaca gaatactgga gggataagaa ggttgtctcc atgatctcca      1680
     caagtcatga ccattcaatg gtatccgttc cgcagcgtta tggcggaggt gtagttatga      1740
     agcccaaaac agtgttggat tataataaat atgctcgagg aaccgattac agtgacatga      1800
     tgaagaaatt ttacaacatt cgtcgcaaat ccatgaaatg gtataaaact cttttctttt      1860
     acttggtgga tctatgtata ttcaactcct tcgtcatttt caagtcgata cacccaggca      1920
     cgaagaccaa atttctatca tttcggctaa atctaattcg ccaaatcatt ggatcaatgc      1980
     aaccaacaca agctatttgc gcaataagtt cttctggcca accaaaccga ttaacggagc      2040
     gtcatttttt ggaatacaac ccatcaacta agtctcgaca gcatggcgga cgtatttgtc      2100
     acgtttgtgc caataaacaa caagccggac ccccaaatac taagaaacca cggaaagaga      2160
     ccgttttcca gtgcaagcag tgtaaggttg ctctgtgtcc aactgcgtgc tttgaattgt      2220
     accacactgt tcaaaacttt taattcttgt taccttaaat gttaaatttt aaagtgttat      2280
     attgtggtcg tcataattct cataagttat ggaattttgc tttacaatgt caaattgtta      2340
     aatgttgata ttcattattt taaatacatg tcgtttattg acgttgtccc gcagcaatca      2400
     ttttcacctg acgcgttttg ccgttctccc gaattgagca tttaaaaaaa ttctcccgaa      2460
     tctaggcaac tcaatatgct tgaagtttcc agatttagaa cttgaaagat ttttattatt      2520
     tttcggcttc ccgaatgatc acaattgtgg tcaacgaaac gccccgcagc aacgccaaac      2580
     atagttaccg tttctcctcg gctaaggg                                         2608
//
ID   piggyBac-4_HMM repbase;    DNA;    INV; 2015 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-4_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2015
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2646-2646 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. TTAA TSD. 13bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           815..1684
FT                 /product="piggyBac-4_HMM_1p"
FT                 /note="DDE transposase."
FT                 /translation="MMCSLHGYAYRFMIYSGKADSDTLPGEPDLGPIAQTV
FT                 IKLARIIPRRQNYIVHFDNYYTSIPLMAYLAGEEIHTLGTVQRNRLGKECK
FT                 LMTKEQLLKQARGTYEENKTSVNGVDITAVAWMDNKPVTLASTYVGVSPVG
FT                 QIQRYDKKEKKKVTIACPNLVKEYNAHMGRVDLMDSYLGRYRIRMKSRKWY
FT                 MRIFYHLLDLSVINAWVLYKKVATEKGESPKNILKLADFRAELADTLCKFS
FT                 PPTRGRPASIEDTPRAKKIRKGVICQQKPPRELRLDGFGHDQKRGDSRK"
XX
SQ   Sequence 2015 BP; 675 A; 325 C; 388 G; 627 T; 0 other;
     cccttaaatg catcttgtat cgaaatcgat actctgtgtt tctttaaagt tatcatgttt        60
     ttttacatgg aaataattat tcgtgtcaac aaaaaccatc gacagacata caataaaaaa       120
     taaaatagtg acagcatgtc attcgtcccg ccaaatttac gaatatgaaa gtgttttggt       180
     gtgtactagt acatttacga ttttgataca aagtcaataa cttcgatcag ctttcttcgt       240
     gaatattttt aaaactactg tgtttgaaaa atattaccga caaggtatgt atttcaatcg       300
     tgctctcctt ttactatatc taaaatattt ttacaaaaat tgacactttt ggcaagattt       360
     ttctttgtat cgaaattgat acattatgca ataacggtaa gtaaaattgt tatttcctaa       420
     tactataaat tattttgtaa aaatatttat aaactattta tttgctttgc tttgctcatt       480
     ttttctggag ttgggctatc tatggtgtgg tgcatagttg tttttattta tctagtcatg       540
     gattcaaggg aaatcgagaa atacctgcgg cagctagaaa atggtgaact gtcttcagat       600
     ggagaggaat ctgattatga tgatctagat tattacccta ctcgtgacgc tttggaagct       660
     gagttagaag ggaacattga aaatggcgtc gaagtagacg aggttatccc tgacatcacg       720
     caaggcctat ctacaagtac agatgtgcgc cacgaagata ggacatgaaa caatatatgc       780
     caaataaata aataaatggg ggttcaaact cttcatgatg tgtagcctgc acggatatgc       840
     ttacagattt atgatctact ctggcaaggc ggactcagat acattgccag gtgagcccga       900
     tctaggacca attgctcaga cagtcatcaa attagcgaga attattccaa gacgtcaaaa       960
     ttacatagtt cattttgaca actattatac ttctatccca cttatggcgt atttagcagg      1020
     ggaagaaatt cacaccttag gtaccgttca gaggaataga ctcggaaaag aatgcaaact      1080
     aatgaccaag gaacaattat tgaagcaggc tcgtggaacc tatgaagaga ataagactag      1140
     tgtaaatggc gtagatataa cagcagtagc ctggatggat aataaaccag tcaccctagc      1200
     ttctacttat gtgggggtaa gccctgtggg tcaaattcaa aggtatgata aaaaggaaaa      1260
     gaaaaaagta accattgctt gtcccaactt ggtaaaggaa tataacgcac acatgggaag      1320
     agttgaccta atggactcat atttgggtag gtaccgaatc aggatgaaaa gccgcaagtg      1380
     gtatatgaga attttttacc atctactgga tctctctgta ataaacgcct gggtacttta      1440
     caagaaggtt gccacggaaa aaggtgaaag ccccaagaat atattgaaac ttgcagattt      1500
     ccgagccgaa ctggcagata cactgtgtaa attctctcct cctactagag gtcgtccggc      1560
     cagtattgaa gatactccaa gagccaaaaa aatacgaaag ggagtgattt gtcagcaaaa      1620
     acctccaaga gaacttcgtc ttgatggttt tggtcatgac cagaaaagag gggacagtag      1680
     gaagtgatgc ataatacctg gatgcgattt attaagtata atatattgta gtaagtgtaa      1740
     agtgtattta tgttaaaaaa aagtaaagac tgttgtagtt tatttcataa ctgtgctgat      1800
     ttttagaaga gtattctgtt tcttgaatac tattacaagt ctataaaagt aacctaaatg      1860
     cataatgtat cgaaatcgat acatcatatt ttttgaaaaa ataaacatta ttatatttca      1920
     ctaatttttt tttattattt ttctctttat ctagacctgg taacctatca tatatattta      1980
     ttgcatgttt taaaaaagtc tcatgcattt aaggg                                 2015
//
ID   piggyBac-4_LMi repbase;    DNA;    INV; 3040 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3040
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3330-3330 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(480..872,883..2064)
FT                 /product="piggyBac-4_LMi_1p"
FT                 /translation="MQSHVSATDVSCSESEESESDSEMPTKKSRLSDKFDW
FT                 KENDFRPVNHAFDDALSGHVRQIGNEPSILSVFMLFFTEELMKYIADETNR
FT                 FYLFTKENTPESVHSRLSKWKDTGYEEMYCFIAVCLLMPRVKNRILDQRCS
FT                 SKYPIFSELMSRDRFLLLLRMLHFSDNSANTGGDRLFKIRNIVDKVRQAFR
FT                 RAFNPRQKLCIDESLLLFKGRLSFRQFIPSKRSRFGIKTFVLCDCKTGYIL
FT                 DFIVYTGTSTETEFHNLGKSGDVVATLMKPYLERGHTLYVDNWYTSPDLFS
FT                 WLHSRGTNACGTVRKNRRNMPKLHKKLKRGDIQFMCTNTMLAIKWCDKREV
FT                 WMLTTCNTTEMVETRKTDRHAGEKIKKPQSIVDYNLNMGAVDRSDMMLSSV
FT                 GCIRKTMKWYEFFFHVLDLCVLNSHVLHRSLTGRNMSIAEFHLSLIRELTE
FT                 TYASERRKAGRGRCCDDNPLRFVGRHFPNIITSDQSKKSTLTRRCIVAGNR
FT                 KCVEKAGTNVKLARYHCASYPVLKITTQK"
XX
SQ   Sequence 3040 BP; 925 A; 572 C; 685 G; 858 T; 0 other;
     ccctttgact gctgttgacg agtttgtcat gctgcctgcc gctccctggg tgctgatgcg        60
     agtttagtcg cggctgccgg ctttcccctg agcgctgttg acgagttaag tcgcagggtt       120
     ttccggccct gagcactgga atagccgcac cgctacctga gtgctgttga tgagttgcac       180
     tgctttcccc ccatgtctcg tagcctttca cagctgtggc cactagcttg tcgtccgatt       240
     cttcatctgt tgtgaaccag gcttcaccaa cacagttcat cagaatttat atcagtgttc       300
     ttccatcctg tattttacaa agaaaatggc aagacgttgt gggtgtactg atgaagaaat       360
     catggaggtt cttacgagaa gtgacaggag gatgaactat ttgattttga cgaaagtgat       420
     agctcttcca cagaatctga aaactgtagt aataaaccgt ccacgcagca ggggtgtcaa       480
     tgcagtctca tgtttcagca acagacgtta gttgttctga atctgaagaa tcagaaagtg       540
     atagtgaaat gcctacgaag aaatcacgtc tcagcgataa atttgactgg aaagaaaatg       600
     attttcggcc agtaaatcac gcatttgatg atgcgctatc gggacatgtg cgtcaaatag       660
     ggaatgagcc aagtattctg tcagttttca tgttattctt tacagaagaa ctgatgaaat       720
     atatagctga cgaaacgaat cggttttatt tattcaccaa ggagaatact ccagaatcag       780
     tgcattctcg actatcaaag tggaaagata ctggatatga agaaatgtat tgtttcatag       840
     ctgtttgtct tctgatgcct cgcgtgaaaa actgaaaatt agcgaatact ggaccagaga       900
     tgttcttcta aatacccaat ttttagtgaa ctcatgtcaa gggaccgctt tttgttactg       960
     ctgagaatgt tacatttcag tgacaactct gccaatactg gaggagacag attgttcaaa      1020
     attaggaaca ttgtcgataa agtgcgacaa gctttccgtc gtgcatttaa tccacgtcag      1080
     aaactctgca ttgatgaaag tttgttatta ttcaaaggac gcttatcttt cagacaattc      1140
     attccttcca aacggagtag attcggaata aagacatttg tgttatgtga ttgtaagact      1200
     ggctatatct tagatttcat tgtttataca gggacatcaa cagaaactga gttccataat      1260
     ttagggaaaa gtggtgacgt tgtggctaca cttatgaagc cctatttaga acgtggacat      1320
     accctctacg tcgataattg gtacacaagc ccagacctgt tttcttggct tcacagtcgt      1380
     gggacgaacg catgtggtac tgtccgtaag aacagacgca acatgcctaa acttcacaag      1440
     aaactgaagc gaggagatat tcaatttatg tgtactaata caatgcttgc tataaagtgg      1500
     tgtgacaaaa gggaagtgtg gatgttgacc acatgtaaca ccacagaaat ggttgaaacg      1560
     agaaagactg acaggcatgc tggagagaaa attaagaaac cacaaagcat tgtagattat      1620
     aacttgaata tgggagcagt tgaccgttct gatatgatgc ttagctctgt tggatgtata      1680
     cggaaaacaa tgaagtggta tgagttcttt ttccatgttc tcgatctgtg tgttttaaat      1740
     tctcatgtcc tacacaggtc actaacaggt cgtaatatgt cgatagcaga gtttcatctg      1800
     tcgctgataa gggaactcac ggaaacgtat gcatcagagc gcagaaaagc tggcagggga      1860
     aggtgttgtg atgataatcc tctaaggttt gttggaaggc attttccaaa cattataaca      1920
     agtgaccaat ccaagaaaag tacgctaaca cgtagatgta ttgttgctgg aaacagaaag      1980
     tgcgtcgaga aagcaggtac gaatgtaaaa cttgcaaggt accattgtgc atcgtaccct      2040
     gttttgaaaa ttaccacaca aaaatgaatt actaatcgca acaaagtacg aatacaccag      2100
     tgcaaaagaa aaaaaaataa ttaaaaaaat cgccagtgcc ggtccaaagc ccggatcaaa      2160
     aaggatggaa aatatattca gaaggtgtga acattagtaa tgtttaacga tcgtcaaaat      2220
     aatactgact gatatagtcg cttgaatggc ttgatgcgca aatttgaact aaatttactc      2280
     ggtatgggaa agaggtacat aaatgaaact ttatatttga gaaccttgtg ttgttaggtt      2340
     actacatacc aagtttcact ttcgtcatac tttcagtccc tgagatataa gaagccgaac      2400
     ttgagatttt tttctggtgc cgatttttta ggatttattt atttatttct ttattattct      2460
     taagataacg aatatagttg tacaagatag ccaattttaa tatattttaa caaaatatta      2520
     accgagatat aacagttcaa attccccaga aattcacacg cactctgcgc aatgtcgtgc      2580
     atgaagtcaa acaagtgact atatcacatc cagtataaca tcgacgattg ttaaacttca      2640
     ccaatgttca tagtggatat atgagaatgt tcatataaaa ttacttcgaa atccgtttta      2700
     gtcgattggg aaaatgttcc aaatttattt atttgacgtg gaatgaccca taagcagttt      2760
     caatgcacgt actgtctgtt cagtaattaa tctgcagtaa ttcttctgcc acggaggaag      2820
     tatgcagata gcgtacattg tgtgtcgtga tacactcaga aggtgacaca gccgcgaccg      2880
     cctggctaca gaaatattca gcacgggcaa ggtcggccga gtgacgggct ggcggttgcg      2940
     gcagccgtcg ggaagcacag tagcgcaggt gcggggatta ggcggcctaa gggcgcgcgc      3000
     gacctgaccg actggatgct cggcggcagc agctaaaggg                            3040
//
ID   piggyBac-5N1_LMi repbase;    DNA;    INV; 1348 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-5N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1348
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3331-3331 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1348 BP; 456 A; 226 C; 276 G; 390 T; 0 other;
     cccttgtgtc cacaatcaaa aaattatacc ctgttctata accaggttac ctgggtaacc        60
     caatgaattt attgccgtac agtcacggtt ggcaacactt agccctgggt atatacacaa       120
     ctgttgcagc aaggtattct aattgttgct agctacagtt gctactgttt cacagcgttg       180
     tgaactgtga attattgtgt aagctttgtt actgtgaaca tcatttctag attctcatgg       240
     atgataagct ggaactctcc aaatctgaat acagcagatt aagctatgaa gtatattaga       300
     aagttattga ctattgatac agaagaggat gttacttcag atttcaacga cgaagattct       360
     acagatgaat ggattcttag aaaggaggat gctgctgctt cagacattga agatgctgtt       420
     agtgcttgta gtgatattga agttgaaata gagacaagtg atactagtag taatgaacat       480
     gacagagctg atgaaaacag tgaagcaact gtgttttctg caggcattct acgtggcaaa       540
     gatggaacca aatggcataa ggaacccttc ggtacaagaa agttgttgaa gcataatatt       600
     ttgcggcaaa gggctggtcc aacacgtaca tctttctata aaagacactt tcaagactat       660
     atttacagaa gaaatgtgta atataataat acgtgaaacc aacaggaagg caaatcaggt       720
     attcacagac tataatatca attcagaagt accagcgaaa gtgtgggagc cattgacaac       780
     tgaagaattt gacaccatat cttggtatgc tgattacagc tggagtaaga ttctctaaca       840
     ctgaacacac gaaggaaacg tggaaaacaa atgcattccc attctatcgt gcaagcctat       900
     cgctcaacag gtttcggcag ataagcagat ttataagatt tgacaatgtg aacactagga       960
     gtgagcgatt gaaaagtgac aaagctgctg caatatctga catttttgaa atgctaaatt      1020
     caaatcttcg taaatggttg tctaataaat aataaaacaa tcgaaatatt atataaaata      1080
     aagtattaca tttatgaact tcacacctgt tataatggag atatatcgtt acctgggtaa      1140
     cccaaatata gattagaggg tgtgttctgt tgcttcccat ttaaatgctc ttctatgaaa      1200
     gtatttaaat ttttcctgtt gttatgacgt ttataaagat gcaaatgagg aataacctga      1260
     ggcttgtgtc cactagtttc aatacacctg aaaaatgggc tgttacagtt agaaaggtta      1320
     cccgggtaac ccaatgtgga cacaaggg                                         1348
//
ID   piggyBac-5_FoCa repbase;    DNA;    INV; 2663 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-5_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2663
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2501-2501 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. TTAA TSDs. 17-bp TIRs.
XX
SQ   Sequence 2663 BP; 823 A; 478 C; 549 G; 813 T; 0 other;
     cctcttggct accaattaca cacatttgtg taacaatttt tttaccgttg gctaccaatt        60
     acacacattt gtgtaactta gttacaaatc tcgatattcc gttggctacc aattacacaa       120
     atacgtgcaa tgaaaaattc tacgacttcg gctggaaatt ttctgttttt tgcgaaaata       180
     ttgtaattat ttgcatctgt gactgtaatt caacgtgaat ccttgtcgaa tttcgtcgtc       240
     aaatatgtct ggaatacttg tctcgaatca aggaacagtg gaggcgatcg acgttgcaga       300
     taattgggaa ccagagtgga tgcgaaatga tgagatggaa gaaggtaatg accccgagga       360
     gtacttgcag tttgaagaga ttacttctga tgatgaagaa cctgttgctt cccgaatagt       420
     aagattactt tgcaaattgc attacaaatt ttggccactt tgtaatcatt cattttttaa       480
     ggatggaatc gagtgggagg gagattcgga atactttttc ccggaaacac cagactttct       540
     ggatccagtg acatttgtta gtgatgagga tatctcacca gcctccaccc ccttgttcat       600
     acttcagaaa attgttactc ctgatattgt tgacgaaatt atcacccaaa ccaatttata       660
     tgctgatcag aaggcgatac caaattggaa gaacgttggc gtccccgaat tttggaggtt       720
     ttttggcctg aatatgttga ctggtgttgt gcagaaacca agtttgaagg attattggac       780
     tcgagatcca ctcacagcca ctcccttctt cagtgaagca atgagtcgga ataggtgaat       840
     ttctagaaaa atcaaatcaa atacataccg tgatgaataa atttgtataa taaatggccc       900
     atgataactt ctccagattc gaacagatac tcagggggct acactttcaa gtggatttag       960
     aagaaccaac gcttgacacc aatgatcgtt ttcataaaat gggaacaatt ctacccaata      1020
     ttgctgaaga attttagaaa acttgtaaat cctggggaat atcttgacat tagatgagga      1080
     gttgatgcca tacaaaggag ctctcagctt caagcagtac aaccccaaga aaagagggag      1140
     gtttggggtc aagtccttct tcctgatgga ttgtgcaaca ccgatttgtc ctcgatattt      1200
     taccatacca gggaaaatcg accagaatat caaatcctct tggataaaaa tgtatggatt      1260
     tggaggcgct gctgtgctta ccatgctgga gaagggatat ttaggaaaat accatcgcct      1320
     agtcgtggac aattagtttt ccagtctcca gttttagcta aaacattatt ggaaaaaaag      1380
     acgtttgtcc ttggtactgt tcaggaaaga ccgaaaattc atgccaaaat ttatcgacca      1440
     tgtcacatcc cgtccatctc gtctcaagaa aggagaggtc gagacatttt ctgacgggga      1500
     tttgctttta gaaaggtagt gaccactttt tcgcatatat tttcgcaaaa ttagtgctaa      1560
     aatatttata acgtttcaag gtggatggat cgacgagagg tcttgatgtt aaacacattt      1620
     attgatcatc gcatggaaga ttgcgaggct ctcaactaat ccccgtaatg cccaggtcaa      1680
     gcctagcatc agtccttgtt tacaacaaga gcatgggagc cttggatgac atggacaaga      1740
     gtatacgaac cttatcaagc ccatcagaaa aaccctcaaa tggtatcgca agttcgcctt      1800
     ccatcttttc gactatctgt gtgtataaca gtcttgggtc gtataaaatt gttcacatga      1860
     attctcgaag aagcacagga tacaaacagt atttgtcgaa tcattaatca aagaaatcat      1920
     gtccgcaaat gtcaaccgat aagaagtacg aagggacgtc cagtatctat acctcatcaa      1980
     caaagtttca actctcttca gcatttctca tcaacacttc ggaacaatgc aggaaagaaa      2040
     gttcgtggaa actgtcacct ctgttggaaa actactgaat aagttgagga aggcaacatc      2100
     ttttagatgt gaagcgtgcg gtgtttggct atgtgttgat ggtgaaaatt cttgttataa      2160
     aaaatatcac atcactggag ctgcaaactc tcaaagttta caggtattga tgggcattat      2220
     acgaatgttt ggattcattt tgatatccat gtgcctagat ttaagtatta tttaatatca      2280
     tgtttcatct tccagcgacc acagtttgaa aatctgaata gtcagaatgt gggattaagt      2340
     ccatcttaaa tttgttcaaa tattagtacg aagagtgaaa aattattgtg tcttggagtg      2400
     ttgtttagta atcaaacttt attagtgccg tgttttatgt cgatgtactt tttggtaatt      2460
     ttgttcgaat ttctgtgata atagttgtaa cttgcatcta tttatgtgaa aaaataaatc      2520
     aaaagtgctt tggattaatt tgggagccaa cggaatgtgt gtcggaattt tctttaaaaa      2580
     atatggtagc caaaggtatg aaggtattta attagtcggt ctccaacgga aatttctcca      2640
     aaattaaatt ggtaactagg agg                                              2663
//
ID   piggyBac-5_HMM repbase;    DNA;    INV; 1093 BP.
XX
AC   .
XX
DT   13-FEB-2013 (Rel. 19.10, Created)
DT   13-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   DNA transposon family from Heliconius melpomene melpomene.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-5_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1093
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2647-2647 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. TTAA TSD. ~33bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           276..815
FT                 /product="piggyBac-5_HMM_1p"
FT                 /note="DDE transposase."
FT                 /translation="MITKRTNNIFVCNWKDKREVLCISNMHKPILVPVPNK
FT                 NGRVSIKPNVVRDYNNGMSGIDLSDQMLSYYSALRKTLFWYKKLAIHIFES
FT                 FIHNACMIYNQQANLPPEKKLDALSFKDEVVKYLLGEKFIKHSHHEQKKQV
FT                 ELHYLERLPPTQKKTKTDEAVSCLHQRKKTQRNSLLLSGMP"
XX
SQ   Sequence 1093 BP; 371 A; 215 C; 190 G; 317 T; 0 other;
     cacgttaact gccatacgag tatactcgta gtattttttt tttatggcta ttgccaccat        60
     acaaaatggt aagtacgtgt atactcgtag ttggcagtgg atcctagttc taactacaag       120
     tttactcgta gtatggcaat aaaataggat ttttattagc tattgccaaa ctacgagtat       180
     agtattgcaa tcacatactc tgcctcggaa ctttgagaaa aaatcgcaaa ggaaacccta       240
     aaactctgtt gagcaccaaa ctgataaaag gccagatgat tacaaagaga actaacaata       300
     ttttcgtgtg caactggaag gataagagag aggtgttatg tatctctaat atgcataaac       360
     ctattctggt tcccgtgcca aataaaaacg gtagggtttc aataaaacct aatgtagtta       420
     gagattataa caacggaatg tccgggatcg atctttcaga tcaaatgctc tcgtactact       480
     cagctcttag aaagacattg ttttggtaca aaaaactagc gatccacatt tttgaatctt       540
     tcattcataa cgcatgcatg atctacaacc aacaagccaa tcttcctcca gaaaagaaat       600
     tagatgctct ttcgttcaaa gatgaggttg taaaatatct tttaggcgag aaattcataa       660
     aacacagtca tcatgagcag aaaaagcaag tagaattaca ttacttagag cgtttaccac       720
     ctacccaaaa aaaaacaaaa accgacgaag ccgtgtcgtg tctgcaccaa agaaaaaaaa       780
     cgcaaagaaa cagtttacta ttgtccggta tgccctgaaa aacctgcctt atgcgttgaa       840
     aattgtttta aaatttttca ctcctttgtg acttcacagt gatgtaccta attttttttc       900
     tattaaactt aattttctga tttaagtaat gttttattcc aaatgccaaa gaatttaacc       960
     ccgtcctcct tacacggcca ctggtttaaa attcgtcaga aatcgcatac aatcaactac      1020
     gaaaatactc gtagttggcg gtgcagccca gatcatgtac tacgagtata ctcgtaggtt      1080
     ggcaggcaac gtg                                                         1093
//
ID   piggyBac-5_LMi repbase;    DNA;    INV; 2503 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2503
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3332-3332 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(237..581,585..713,680..898,991..1260,
FT                 1203..1628,1632..2051)
FT                 /product="piggyBac-5_LMi_1p"
FT                 /translation="MDDKLELSKSEYSRLSYEAKEEYIRKLLTIDTEEDVA
FT                 SDFSDEDSTDEWIPSKEDAAASDIEDAIGACSDIEVEIETSDTSSDEHDRA
FT                 DENSVFLQAFTWKDGTNGIRTFGQESCSIIFWAGHTYNNFYKRHFKSIFTE
FT                 EMCDIIRETNRKANQVFKLNQQEGKSGIQTIISIQKDSESVEAIDNEEFDA
FT                 YLGILITAGVRFSNTEHTKEMWKTNAFPLYRASLSSTGFGRIQIFVKTMCL
FT                 LIASLLMNSFFLTRKDRFTQYMPSKPAKYGLKVWWVCDSRNSYPITGQIYT
FT                 GKSASGRESNQGERVVKIYVTTSRVLAEISRREGSKNLCYHFKGTGRNIVT
FT                 DNFFTSLPLARLLMTWDLSIVGTVKRNKPYIPPEMQPSSSRQELSSIFGFI
FT                 EDNVSLCSYVPKKKKAVLMLSTMHYDASTSGPLSKPDVIHYYNSTKGGVDN
FT                 MDKLCSHYSVKRRTRGGRHFLHILDIACLAAYIIYXENNPQAKNVTHRRRL
FT                 FLLDLGKELAMPSIISRSSNHNCLRKFSVKSGIECMIGGPLILVPEQVEAQ
FT                 PKRDASGRLKITGDCFVCKSHQTKGRGKQEKVARHVRKQYVMSIALQQRCV
FT                 DFVSK"
XX
SQ   Sequence 2503 BP; 829 A; 414 C; 515 G; 744 T; 1 other;
     cccttgtgtc cacaataaaa aaattatact ttgttctata accaggttac ctgggtaacc        60
     caatgaattt attgccgtac agtcacggtt ggcaacactt agccctgggt atatacgcaa       120
     ttgttgcaac aaggcattct aattgttgct ggctacagtt gctactgttt cacagcgttg       180
     tgaactgttc attattgtgt aagctttgtt actgtgaaca tcaactctag attctcatgg       240
     atgataaact ggaactctcc aaatctgaat acagcagatt aagctatgaa gcgaaagaag       300
     agtatattag aaagttattg actattgata cagaagagga tgttgcttca gatttcagcg       360
     acgaagattc tacagacgaa tggattccga gtaaggagga tgctgctgct tcagacattg       420
     aagatgctat tggtgcttgt agtgatattg aagttgaaat agagacaagt gatactagta       480
     gtgatgaaca tgacagagct gacgaaaaca gtgtgtttct gcaggcattt acgtggaaag       540
     atggaacaaa tggcataagg actttcggac aagaaagttg ctgaagcata atattttggg       600
     ctggtcacac gtacaacaac ttctataaaa gacacttcaa gagtatattt acagaagaaa       660
     tgtgtgatat aatacgtgaa accaacagga aggcaaatca ggtattcaaa ctataatatc       720
     aattcagaag gacagcgaaa gtgtggaagc cattgacaac gaagaatttg atgcatatct       780
     tggtatactg attacagctg gagtaagatt ctctaacact gaacacacga aggaaatgtg       840
     gaaaacaaat gcattcccat tgtatcgtgc aagcctatcc tcaacaggtt ttggcagata       900
     agcagattta taagatttga caatgtgaac actaggatga gcgtttgaaa agtgcaagtg       960
     ctgcaatatc tgacattttt gaaatgctaa attcaaatct tcgtaaaaac tatgtgcctt      1020
     ctgattgcct cactgttgat gaacagcttt ttccttacaa ggaaagacag gtttactcag      1080
     tacatgccct caaagccagc taaatatggc ttgaaggttt ggtgggtttg tgattcgcga      1140
     aattcttatc caataactgg ccaaatttat acaggtaaat ctgcttctgg aagagaaagt      1200
     aatcaaggag agagggtagt aaaaatttat gttaccactt caagggtact ggcagaaata      1260
     tagtaactga caattttttc acatctctac cattagcaag gctgttgatg acttgggatt      1320
     tgtccatagt tggtactgtg aaaagaaaca agccctatat accgccagaa atgcaacctt      1380
     cctcttcacg tcaagaactg tcgtctatat ttggattcat tgaagataac gtttctctgt      1440
     gttcatatgt tccaaagaag aagaaagcag ttctaatgtt atcaacaatg cattatgatg      1500
     catccacctc tggtcctctt tcaaagccag atgttataca ttattataac agcacaaaag      1560
     ggggcgttga taatatggac aagttgtgtt ctcattacag tgtgaaaagg aggaccagag      1620
     gtggccgtta gcatttttta cacattctgg atattgcttg cttagcggca tacattattt      1680
     acamagaaaa caatcctcaa gcaaaaaatg tgactcatag acgcagactg tttctattgg      1740
     atctggggaa agaattggca atgccttcca ttatctctag atcatcaaat cataattgct      1800
     tgagaaaatt ttccgtgaaa tctggtattg agtgcatgat aggaggacct ctaattctgg      1860
     ttcctgaaca agtggaggct cagcctaaac gagatgcttc tggacggctg aaaatcactg      1920
     gtgactgttt tgtatgcaaa tctcaccaaa caaaaggaag aggaaaacaa gaaaaagttg      1980
     caagacatgt aagaaaacaa tatgtgatga gcattgcatt acaacaacgg tgtgtggact      2040
     ttgtgagtaa ataataattc caagtgtatc tttccattgt aacgagcagc aaaatttagt      2100
     agctaataat tttatgtaat ttcgttacat gaagtaaaaa actgatatat ttttcactta      2160
     tttatgtcta tatctgttgt actattacat ggttgtctaa taaataataa aacagttaat      2220
     atattatata aaataaagta ttacatttat gaacttcaca cctgttataa tggagatata      2280
     tggttacctg ggtaacccaa atatagatta gagggtgtgt tctgttgctt cccatttaaa      2340
     tgctcttcta tgaaagtatt taaatttttc ctgttattat gacgtttata aagatgcaaa      2400
     tgaggaataa cctgaggctt gtgtgcacta gtttcaatac acctgaaaaa tgggctgtta      2460
     cagttagaaa ggttacccgg gtaacccaat gtggacacaa ggg                        2503
//
ID   piggyBac-6_FoCa repbase;    DNA;    INV; 3084 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-6_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3084
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2502-2502 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TTAA TSDs. 14-bp TIRs.
XX
SQ   Sequence 3084 BP; 962 A; 592 C; 607 G; 917 T; 6 other;
     cctctttagg gctaagggct actatagttg catwgtttta aatccctgag agatggcatg        60
     ctactattgt cgacttttaa aattgtccca tggagactaa aggcgacttt tgtctctaaa       120
     ttaaaacatc cccgtgagac gacggtctag tcgattcctc aaaaaatgtc ctggagacga       180
     cgatcgactt ttgttgcatc accatatttt caatcgcaaa ttgaaaataa tatttttttt       240
     cctgcttctt actttgtttt ggcgaaaatt ccaaacatat tgttaggaca caatttcatc       300
     tttaatcagc gacccaattt aatgaatgta taacccatat ttggacgcaa gttgaatgtg       360
     aaacacacat aataatatcg tcgtgtaatg gttgcgtgag ggagagctct ccagctctcc       420
     agttataaca tgagttattt aagacgagat ggttttgtgc tgaggcagca tttttagtta       480
     tctttaaatg accaccacta gtacctaagt agtgtgcata attaaataac agtgcttcat       540
     tcaatgagtg cttaattaaa tgtcttaatc ttaaagtcca ttgaattgtg tacaatcgtt       600
     ttgccaaatt ggcactttag gttaatcatc atttttagac ttacccatcc tgtgtggaca       660
     ggaatagttt agtcgttctg tggagcgtgt gtgtgtgaga tcctttcaaa taaaccttga       720
     tcaaccccaa aacttaagag gcagtttgcg acactttatt ttgcacaatg agataatgct       780
     gcaaatgtat ttgaatattt taaatgtatt attctgatca tgcatagcaa gcattatatt       840
     ttacagcaag agtccccaat ctcaagaatt cggcgacgca caacatcgcg gtcacaagtc       900
     gtcccaactc cagtggttat ccattccacg ataaattcga cgtggggaga tggaaccaat       960
     ttccacccta gaccaacgca gtttgtgccc ccactaggaa ggtttcatcg atcattcaat      1020
     gctgactcag attctacacc atttcaactg cttcgaatgt ttatcgacga cgacatggtg      1080
     gatacaattt gtctcgaatc gaacgattat acgcccgtca tcaaagccaa attcccaaaa      1140
     gcattgaaga ggtggacacc actaagccgt caggagtttt ggaaattcat gggtctatca      1200
     acactgatgg gaattgtgaa aaaaggagat gtgaaggatt attggagcac ggatgaacta      1260
     atatcaaccc caatttttgg taaaaccatg agcagagatc ggttagtaga tgcatacatt      1320
     ttatgcatac gtggtgtcag acaatgataa ttattgcatt tgataatttt agtttcacag      1380
     atataatgag ggcacttcac ttccaaaacg atggaaatat acccacggga aatattgatc      1440
     gatttatcaa gctcggctcg ttcttcccat cgttgatgtc gaagttcaaa aattttgtga      1500
     ttccggggga atatctctca cgatagatga gagtttgatg ccgttcaagg gacgactgag      1560
     tttcaaacag tacgtaccct ccaagagggc aagattcggc gtcaagttct acatcttggt      1620
     ggattgtgca acaaaggcag tcctcaaagc tctgcttcca tatcagggaa gaactaccaa      1680
     aatagacaat atcgctgsac csaaggatat ccttggatkt aggtggcgct gcgtgmtsac      1740
     tttgctgcag gatggatatc ttaataaatc ccaccgtgtt gtggctgaca attggttttc      1800
     cactcccaag ctagcattgc agaattgttg aaaaatgata catattacct tgggactgtt      1860
     cagaaaaggc gatgtgaaga tgcaaagaaa cagatgcgaa cgaaacttag gaaaggaaca      1920
     tgttgagagc tggactaacg gtgatattct tattgaacgg taatacaaac ctccgtaaag      1980
     atttattttt tatttctaat aaagaaaaat tagtaataaa atgaattata tttcatgatt      2040
     tttaggtggg aagacagacg agaggtttgt atgataaatt cattcatggg acatgcaatg      2100
     actgagaagc tttcaactac aaatccattc aacacacgga ataaacctaa caccgttctg      2160
     ctctacaatt cgaaaatggg aggagttgac gacgtggaca aggtgacgaa gccgaacaag      2220
     tccattagga agaccattaa gtggtacaaa aaagtgttct tccatctctg ggaccatgcg      2280
     gtgtataata gtttcagagc gtacaaaatt attcacccaa attccaagcg aagatacaag      2340
     caatttgtgg agtcactcgt aaaagaaatt cttcaacagt tcccaactga tccgtctcat      2400
     gtcggacgac cccttttacg cctctccgaa gagttaagac ttcagggttc acacttttcg      2460
     gaacaaactc taaaaggttc caggaaaatg tgcgtattgt gctgctgaat gtgttcagaa      2520
     gacaacatcg tatcgttgtg aaacatgtga aaattggctg tgtgttacag gaaagctttc      2580
     ttgcttcaaa aaatatcaca ctgaacgaca tcttccaaag aaaaattcac aagcacgggc      2640
     tgatcctcta ttgccctccc ttccgccata cgaattagat acacccgatt ttctaacgtt      2700
     gcatgatgtt gatttgaatt cgtctcaatt tcgcgttaat caaaataatt agatgtttgc      2760
     aatatttgtt catttgtttg ctgatttgtg tttgaaacaa aattgttagt caatttgcga      2820
     ggaaaaagga aactgaataa ttatagaaat atttaaactc tttaagattt tgctcattca      2880
     tcaccactgc atacataaaa acactgcatt tatgttaatg tatttttttt aaaaaaaaac      2940
     gtcgtctctt aggactttat catattttta attatgcccc tcaaaattat cagcaattat      3000
     cactggcgcc cccgtagtaa cgccaatgaa tagcttcgca gtctctggga aaagttaggg      3060
     acaataaatg tagccctaaa gagg                                             3084
//
ID   piggyBac-6_LMi repbase;    DNA;    INV; 2345 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2345
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3333-3333 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(367..714,693..1268,1268..2026)
FT                 /product="piggyBac-6_LMi_1p"
FT                 /translation="MASNKRKLSDVELEQLANMDELQWNEFMDEFSDGGSL
FT                 YEPSSCEHSSENSDADSSECNEDDEQVGTTAATTSNSDEWSDIPRDPPVFV
FT                 FNENVGLKLDLQNFGINALVDFFFLTSSFFFSDEFLTLLCEQTNLYARQEA
FT                 EKQGGRRSARLSRWRDTDVAEMKVFLGLLLHMGPCCFPSIEHYWSTNPFYN
FT                 VTFWRSIMSRNRFQLLLRYLHFSDNSLQSNDRLYKIRPVLDHFNNIMSNNY
FT                 VPDKNLCIDESMVLWRGRLFFRQYIKNKKHKYGVKLYELCESNGVVLKIKI
FT                 YCGKSEKNAEMGHASEVVLHLMESLLNKGYVLHMDNFYNSVSLTKLLSTYK
FT                 TYVCGTLRNNRKENPKSLVAMKLKKGQMAWKRNDNVVVCKWKDKRDVLTIS
FT                 NMHCAEMVEVRNRNGKVALKPNIVRDYNNGMAGVDQSDQMLSYYSALRKTV
FT                 RWPKKLALHIIEIYLQNAHRFYNQTAGTSIKSLAFREKFIQALIGDRMPDT
FT                 QKKSKTEGSFHYLEAIPPTEKKLRPTKPCRVCTQQKKRRESRYFCPVCEEK
FT                 PALCVEECFKTYHQ"
XX
SQ   Sequence 2345 BP; 748 A; 435 C; 503 G; 659 T; 0 other;
     cacgttgact gccacggcca aaatgagtaa actgctccca gaagccatgt taagcagttc        60
     atacagtttg attcgtcatc tcatttgaag tccatctgta tcatcgaaac tttaaaaata       120
     acatttttgg cgggaaaatg gggcgtgcga gttatctcgt agttggcgta cggagtagaa       180
     agttcagctc agacgccagc tacgagataa ctcgttgtca acaatcagag acgagcttga       240
     gtatttcgaa gtacatttga caatacgaca catgtcattg ttgtaaccgc gtcagtattt       300
     attcagtctt cattgtagat acttcactga cgtttatcgt tatctgtgtt caattttcct       360
     cgtaaaatgg ctagtaataa gaggaaactg agtgacgtag aacttgaaca gctagctaac       420
     atggatgaat tgcagtggaa cgagtttatg gatgaattct cggatggtgg aagtctctat       480
     gaaccatctt catgtgagca ctcaagtgag aattcagatg cagacagcag tgaatgcaat       540
     gaagatgatg agcaggttgg tacaacagca gccactacaa gtaacagtga tgagtggagt       600
     gacattcctc gagatccacc agtgtttgtg ttcaacgaga atgtgggatt gaaattagac       660
     ttacaaaatt ttggtatcaa tgcacttgtt gatttttttt ttctgacgag ttcctaacgt       720
     tgttatgtga acaaacaaat ctatatgcaa gacaggaagc agaaaaacag ggtgggagaa       780
     gatcagcaag gctttccaga tggagggata cagatgttgc ggaaatgaaa gtatttcttg       840
     gtctgttgct gcacatggga ccttgttgtt ttccatcgat agaacattac tggagtacaa       900
     atccttttta caatgtcacg ttctggagat ctattatgag tagaaacaga tttcagctgt       960
     tattgagata tctacacttc tcagacaact cattacagtc taatgatcga ctctacaaaa      1020
     ttagaccagt tttggaccat ttcaataaca tcatgagcaa taattacgtt ccagacaaga      1080
     atctctgcat agacgaatca atggttttgt ggcgcggccg tctatttttc agacagtata      1140
     tcaagaacaa gaaacacaag tatggtgtaa aactttatga gctctgtgaa tctaatggag      1200
     ttgttctcaa aataaaaatc tactgtggca agtcagagaa gaacgccgaa atgggccatg      1260
     cgtctgagta gttttacacc ttatggaatc tctcttgaac aaaggatatg tgcttcatat      1320
     ggacaatttt tataattctg tatcacttac aaaactcctg tcgacttaca aaacctatgt      1380
     gtgtggaaca ttacgtaaca acagaaagga aaacccaaaa tcattagttg ctatgaagct      1440
     gaagaaaggt cagatggcat ggaaaagaaa tgacaatgtt gttgtttgca aatggaagga      1500
     caaaagggac gttctgacca tttctaatat gcactgtgcc gaaatggtgg aagttcgcaa      1560
     tcgaaatggc aaagttgcct tgaaaccaaa cattgtcagg gactacaaca atggcatggc      1620
     aggagttgat cagtcagatc aaatgctgtc gtattattca gcattgcgaa aaactgttag      1680
     atggccaaaa aagcttgctc tacacataat agaaatttat cttcagaatg cccatcgttt      1740
     ctataatcag acagcaggaa cgagtatcaa gtctctagct tttagagaaa aatttattca      1800
     ggcattgatt ggggatagga tgccagacac ccagaagaaa agcaagacgg agggcagctt      1860
     tcattattta gaggcaatac cacccacaga gaaaaaactg cggccaacaa agccgtgcag      1920
     agtgtgcaca caacaaaaga aacgccgtga atcgcgatac ttttgtcccg tttgtgaaga      1980
     aaaaccggct ctttgcgtag aagagtgctt caagacatat catcaataaa gaaaaaactt      2040
     tgttttcatt gccattagcg agacaaagta tacattttac gtttaaagct aaaatatttg      2100
     ttatatttgt atgaactttt ctgttacttt attcaaactg tgaaattaaa aatcctgttc      2160
     caccacgcct agatgattta ctttacctgt ccccgacgcc caagacctgt aaatcgcacg      2220
     tatttgctac gaatgttctc gtatctgact ttatgtagga actcgtttcc tacgagttaa      2280
     ctcgtattgg gcgccagtgg ccagttcggc acatacgaga taactcgtag ttggcagtca      2340
     acgtg                                                                  2345
//
ID   piggyBac-7_FoCa repbase;    DNA;    INV; 2519 BP.
XX
AC   .
XX
DT   26-NOV-2019 (Rel. 24.12, Created)
DT   26-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-7_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-2519
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2503-2503 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. TTAA TSDs. 6-bp TIRs.
XX
SQ   Sequence 2519 BP; 807 A; 436 C; 498 G; 778 T; 0 other;
     cctcttgacg acgaagtaca cacatgtgtg tagtattata tttaccgttc acggcgaagt        60
     acacacattt gtgtagtatt taattttccg ttgacgacga aatacacaca tttgtgtagt       120
     gttttatttt ccgttgacga cgaaatacac acatttgtgt agtattttat tttccgttga       180
     cgacgaaata cacacatttg tgtagtattt tattttccgt tgacgacgaa atacacacat       240
     ttgtgtaata attgaatttt ccgttgacct cgaaatacac ataaatgcga agtcatattt       300
     ttttgcaaat tcgagaattt cgcaatttaa tttcgcatat tttttggtgc tattgcttga       360
     aaatgtccca aattattttc acacaatctg aagagattgt ggatgaacat cctcaattgc       420
     atactccttc atgggtcgaa gaaacttatt tggagacaca atatgagatg ggcgaggaaa       480
     atatcgacga cgaagccatt ttggagttcg aagcggtgga tgaagaggat gaggagcccc       540
     tgattgaaac agtacgttgt acttaacgta catatgcgtg ccaccgattg tgctaatttt       600
     ttaattttta ggatggaatt gaatgggatg gcgatcacga atatttcttc ccagaggcgg       660
     aagattttca agagagcgtc tttgtgcgag acccggaggt caacgatgca tcatcgccat       720
     attttatact tcgtagattt ttaacagaag aaataattca agaaataatt tatcaaacca       780
     acctctatgc caggcagaca aatattccca agtggacaaa tttatcagtt caggagttct       840
     gggttttttt cgcacttaat attctaatgg gagtcgttcg aaaaccaacg cttcaggatt       900
     attggagcac taactcgttg attgcaacgt attcgtttgg cgactccatg agtagagata       960
     ggtgcatact taaaatactg ctacagttgt actcaagtgt taatcttgaa aatgaatagg      1020
     tttttacaaa ttctgcgtgc ccttcatttt gtgaatctgg aagaccctga attgaatcag      1080
     acagacaggt ttcacaagct tggatcaatt ttgtcaagaa ttttggccaa ttttaagaat      1140
     tttgtgaatc ctggagaatt tttaacactg gatgaagagt tgatgccata caaaggaaga      1200
     ctgagcatcc ggcagtacaa ttcaaagaaa agagggaggt ttggcatcga atcatttttt      1260
     ctcatggatt cacaacatcg ctatgtattg gacattattc catatcaagg gaagaccact      1320
     acaattcatg atcggtcttg gattacaaaa tatggctttg gaggtgccat cgctctgact      1380
     ttcttacaaa aaggatactt tggaaaaaat catcgcctta tccttgacaa ttattttcag      1440
     tcccctactt tggcaaaagt tttagttagg aagcgtgtat tcgtattagg cactgtccgg      1500
     aggactagaa aattcatgcc aaaatttaat gatcccgtaa caaaaaagcc aacaacttta      1560
     aaatctggag aaatcgaaac attctcggat ggggatctct tactcgaaag gtggggagat      1620
     cgaagagagg ttatgatgtt aaatactttc atagaacatc gaatggaaga atgtgagtca      1680
     agaaaccctg caaaccaaag gttcaagcca gcaagtgtcc ttgtgtataa taaaacgatg      1740
     ggatctgtgg ataatatgga cgccatcatt cgaccatatc agactctgag gaagacaaag      1800
     aaatggtatc gtaaatacgc atttcatctt ctcgatattt gcatctacaa ctcttttgta      1860
     attgctggcc acttcaattc tcaaataacg aaaaacggtt acaaggcata tcttctcagt      1920
     ttagtgaaca gtatgcttga cgagaatcaa cttgaacgaa gtaccaaagg acgtcgcccc      1980
     aagtgcccca acgctcaaaa agccaaatcg agtccacatt atcctcaaac tcttcaagat      2040
     gacaatggga aaaataaaag gtcaaattgc aagctatgca cacagaataa gcaaagaaag      2100
     gcaacaaaat atttttgtga tgactgcaag gtgtggttat gtgtaaaggg cgaaataact      2160
     tgtttcgaaa aattccataa gaaatgattt gtgatgtttt agagcgtctt catgtttttc      2220
     atgcagtttt cagtatttat atttgtgata ttgcatgatg attttgaggt ttttaactac      2280
     aaattatggt aattatggtc aaattctaaa taaacccata aaattcgatt gtttaaaaat      2340
     tccggttttc gggtttgttt cattataatt aacccagacg gcaagggcat gcctctaatt      2400
     ttagtattcg tctccaattt aaagcatcct aaagtatctt agtgataaat atattttaag      2460
     ctgatgtata attagtcagc aacggattat ctttaacaat tcacttagaa gataagagg       2519
//
ID   piggyBac-7_LMi repbase;    DNA;    INV; 3168 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3168
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3334-3334 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(376..564,549..677,681..1058,1021..1236,
FT                 1152..1466,1316..1690,1694..1825,1829..2041)
FT                 /product="piggyBac-7_LMi_1p"
FT                 /translation="MSERCLSNKEIMDILMNSSDDDDSATTSFLYTKSWMC
FT                 MELTVFIQHNEELLQKIPLLKRKKMCEEKDVLSEISTRKRFYDWSDNRPAA
FT                 NRHNFANTFSGLKVDFDEATHLDYLFIYFLYFISFEXVSAICRYEQVLYIS
FT                 HRKNDDSAQQITRWKPIDPPEFYCFLACSLLMPRSKQLAVNEYWSKDSLLQ
FT                 TPVFSDIMARDRYKVILRLLKCLLSLCDLTAGSSAPKLTNYLLRGHQPLNL
FT                 QTTYKLSYIKTKDSTNIHARGRIRTPDGERPRASKHSASTRSATRYCLYYT
FT                 SVTIRPHRKIFLAQRLNAIGHSILPLLHFSDNSSASQDILVKIRMIVEHAK
FT                 KRFRQAAVPFENLVTDESCYFSEEGYGSNRIFQTNVAVLGLKFPCFVSYRP
FT                 ITFWIILSTLVPLLKRKLLLFRGRLRFKPYIPNKRSRFGIKISVLCVVQTN
FT                 YILDYIVYTGAATEVESGNADWGKSGDVVVSLLLPYLNKGHGIYLDNWYSS
FT                 PELFLWLHAKCTNAIGTVRKNRKHLPPLPDKLKKGKYNSLGWTVNKSWMLS
FT                 TVNGPEFAQREKKNHKMGGNKVKPTCVVSYNSVGAIDRTNMILSPVQCIRK
FT                 TVKWYKKVFFHLTDLSMLNAKTIFEMQNKQKKPLAKFHLELIRQLLEKFHS
FT                 "
XX
SQ   Sequence 3168 BP; 965 A; 655 C; 684 G; 863 T; 1 other;
     ccctttcgcg gctacgggca tacatgtatg cccggcagtt agaaggccca gacggctacg        60
     ggcgtatatg tacgcccggc aggcaggagg cccagacggc tacgggcatt catatacgcc       120
     cagcaggtag agcggcctga aggctaaggg cattcatgta cgcccggggc ccgggcgcac       180
     aatggagcgg cggcgactcg gttttacccg cggctcaaca ttcctggtgg cactgccatt       240
     aacaggtctt ctttgttatg tcggtaagca ctacagtttt cacttccggg ccttcctgct       300
     cacgagctct ccatcgggcc cgtcctgtat tttttgtttg gcgagagaac agcttttcac       360
     tgtactgtcg ttgcaatgtc ggaacgttgt ttatcaaaca aggaaataat ggacatcctc       420
     atgaatagta gtgacgatga cgatagtgct actacatcct ttctttatac gaagagctgg       480
     atgtgtatgg aactaacggt atttattcaa cacaacgaag aacttctgca gaagattcct       540
     cttcttaaga ggaaaaagat gtgttaagtg aaatttcgac acgaaaaaga ttttatgact       600
     ggtcagataa tcgtcctgcg gcgaatcgcc acaatttcgc gaacactttt agtggtttaa       660
     aggtagattt cgatgaataa gcaactcatt tagattattt atttatttat tttttgtact       720
     ttatctcatt tgaatktgtc tcagctattt gtagatatga acaagtatta tacatttctc       780
     accgaaaaaa tgacgacagt gcccagcaga taacaagatg gaaacctata gaccctccag       840
     aattttattg ctttttggct tgttccctcc ttatgccaag gtccaaacag ttagcagtga       900
     atgaatattg gtcaaaagat tccttgctgc aaacaccagt attttctgac ataatggcca       960
     gagacaggta caaggtgata ctgcgtttgt taaaatgttt gttaagctta tgcgacttaa      1020
     ctgcggggtc atcagcccct aaacttacaa actacttata aactatctta tataaagact      1080
     aaagacagca caaacatcca tgcccgaggg aggattcgaa cccccgacgg ggaacggcct      1140
     cgcgcatcta agcacagcgc ctcaacgcga tcggccactc gatactgcct ttattacact      1200
     tcagtgacaa ttcgtccgca tcgcaagata ttcttgtgaa aatacgcatg attgtggaac      1260
     acgccaaaaa gagattccga caggctgcag tcccatttga gaacttagta actgacgaaa      1320
     gttgctactt ttcagaggaa ggctacggtt caaaccgtat attccaaaca aacgtagccg      1380
     ttttgggatt aaaatttccg tgctttgtgt cgtacagacc aattacattc tggattatat      1440
     tgtctacact ggtgccgcta ctgaagtaga atccggaaat gctgactggg gcaaatcagg      1500
     tgatgtcgtt gtcagtttgt tgttaccata cctcaacaaa ggtcacggca tttatttaga      1560
     caattggtat tcgagtcctg aattgttctt atggctccat gcgaagtgca ctaatgccat      1620
     tggcacagtg cgtaaaaaca ggaaacattt accaccttta cctgataaac tcaagaaagg      1680
     taaatacaat tgaagtctgg ggtggacagt aaataagtcc tggatgcttt ccactgtaaa      1740
     tggaccagag tttgctcaga gagaaaaaaa gaatcataaa atgggaggaa ataaagtgaa      1800
     acccacttgc gtagttagtt acaattagtc agtgggtgcg attgatagga ctaacatgat      1860
     attaagtccc gtacagtgca tacgaaaaac agtgaaatgg tacaagaaag tattctttca      1920
     tttaactgac ttgagtatgc tcaatgcaaa aactattttt gaaatgcaga ataaacagaa      1980
     gaagccacta gcgaaattcc acttggaact aatccgtcag ttactggaga agtttcattc      2040
     ataaacatct aaaagctaga tgccactgac accaaaaagg acagcccttt tcgactggaa      2100
     taaaaaataa cattatcccg ggtttttcgg agcaacggag agaaaggaga taccgcagag      2160
     acattgtgta gtgtgtactg cccatacaaa acggaaaatg acacgaatca ggtgcaaaaa      2220
     aaatgtaatg ttgctctctg tatggtgcca tgttttgaga cataccacaa actaaggaag      2280
     tattagtttc ttcaggtacc ttgaatgttg aaagaaaaga aaatgaaaaa ataagaaaac      2340
     aataaaagca atagaagtaa taaaaaaagt ttttaactca gccagcggca gtcgaatgcc      2400
     tgcgtcagaa atgaggatgg gaaaccacta agtcaaactc taccactccg tgaacatctg      2460
     aaaaataaat ccgctagcag aaagcatgca gatgcttatt atcggattat ttagcatagt      2520
     gaatcgaaat taggctttaa tttcaaacga agcagtcggc ctatcaatat ttttatttta      2580
     ttgtttccat ttcattatta catcattatt tttcttgttt aattctccat tgtgctacat      2640
     ggcacaacat aaatttcaat aaatgttttt tattatttac gattatagct agaactgtcg      2700
     gagttttgca ggtcttccct acgaacaact gactttaaaa ctaaacgttg cgaaacatac      2760
     tcgaccgatg ttaatgaaac tttaatacgt tgtagtaata tattttggta acgtacacct      2820
     caagttatag ttttttcaat aacaaatcaa aaaggtatta gaatttactt aaatcttttc      2880
     gttctcagcc gaggataatc ttataacagt gtcgtttaga tttgaaaggc tgtttcgtat      2940
     cacaaactgc aactgctgtg gcagagcagt gagatactga ttttataaac agtgttattg      3000
     ggggcagctg tgtggtcacc gcaacgcgcg actagcgtgc agctgcagcg gccgtagccc      3060
     acagcggccg tggggccggg tcagccgccg ccgctcaggc ccacagctgg tttcgcgccg      3120
     tcagccaggc gggcagccag ggcgctcgcc cctgcagccg cgaaaggg                   3168
//
ID   piggyBac-8N1_LMi repbase;    DNA;    INV; 964 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-8N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-964
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3335-3335 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 964 BP; 296 A; 168 C; 181 G; 319 T; 0 other;
     ccctagaacg gtcgggctgg gtctgtgaga cccactagtt tctatttcaa tgaatttata        60
     tgcttatagt cgctgatctg actcgagcgc tctgctagct tcctgaaaca tgcaagagaa       120
     agcgttaaca tcatgaataa ggttttaaat tgtttagaca atgttcggca gttctccaaa       180
     aatcgggagg gtctgtcaga cccagcccga ccgtttacgt tattgatttc taccagtgcg       240
     ggtctatttt tatttggtgt ttcatccagt ttcaaattac tttgtgaact atttctgatg       300
     tcaataattt aaaatataaa atttcaagag aaagtgtttc atactgtgaa atttgcaaca       360
     ttttatacga tgatgataat gaaattgacg attctgacgc ggacccagac ttcgaaataa       420
     acagtgatca tgatagcaat agtgaaataa gtggggatga aggggaagat gctataagtg       480
     gaaggacagc aaaactaaat acttctgcaa aatttgcaaa atatagttgt gcttggtgca       540
     tgcagaaatg gtttgtgtcg tctgttacga aaagtgacga ttttagagga cgatatcaca       600
     caaactattc attatatgca caatttcgat ttatataaca aaaattcaac aagtctgctt       660
     ctcagttcta caaattattc tcatttatat ttgtatttca atccaattta cttgtacttc       720
     cagtgtggtt acatttatta ctacaaagaa gtatattttc tattttttta ttttacagca       780
     attgtgaaat tcagaacgtt gaaataatgt ccctacagca tttggtagga cctaaacaat       840
     ataaaaactc gtcatttgat gtaaatacac tgttttggca cttgtcataa gcattttaat       900
     tgttgggtcc cacagaccca gcccgaccgt tcctgaaact atttttcggc cgaccgttct       960
     aggg                                                                    964
//
ID   piggyBac-8N2_LMi repbase;    DNA;    INV; 219 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-8N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-219
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3336-3336 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 219 BP; 54 A; 46 C; 46 G; 73 T; 0 other;
     ccctagaacg gacaggctgg gtctgtgaga cccaggtgga ttttgtttta taaatatccg        60
     caagagtacg ctacttacta ataaacacta aaagaagtat ttttggtact tttgttgaaa       120
     gcttattttt tactcattct agaacgtaaa taaaccgttg ggtctgtctg acccagcccg       180
     tccgtttgcg ctaatttttt tcgcccgtcc gttctaggg                              219
//
ID   piggyBac-8_LMi repbase;    DNA;    INV; 2477 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2477
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3337-3337 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(342..986,914..2089)
FT                 /product="piggyBac-8_LMi_1p"
FT                 /translation="MARESLSYSEIYKILYDDDSEVNDSDADPDFEINSDH
FT                 ESNSEVSGDEEEDVQPSASIDAPTVVDSSTAHHSDSGTSPISFYKGRNGAT
FT                 KWRKTCFPQSVRTRRHNIVTMHLPGSIRAAMDVHSPLESWQLFFSKSLIET
FT                 VLGSTNIYIDSVRDKYNSDPNMARPTSIDELMAYFGLLYLAGTLHGGKMNI
FT                 EDFWNTDGTGIEIFRASMSLKSSDFRLLEYRWDRNRNLSSKYVIEKFRFLT
FT                 RCIRFDNIHTREERKAQDNLAAIRTILDMFVSNCNSYYAPSENVTLDEMLV
FT                 PYRGRCRFRMYIPNKPAKYGIKVFILACSKTYYVKHLEVYAGAQPEGPYKV
FT                 SNKADDVVLRLVDPVKGSGRNLTVDNWFTSYPIVKRLLHEKNITVVGTLKK
FT                 KPEIPFEFLPKKSKEVYSSMFGFQEYITLLSYVPKRNKSVLLLSSMHNDDE
FT                 IDSDSGGKKKPSIITYYNKTKGGVDVVDAMCGEYTVARGTRRWPLCLFFQM
FT                 LNIAALNGYIVFKANGNVSVRREYLRTLGKSLVTPYLKMRATQANLPRQIR
FT                 RLASNLSGTQEQGIVEDPQPGRRGRCYECKDSKTKYFCKVCKVWLCLAHAE
FT                 IVCGECFEK"
XX
SQ   Sequence 2477 BP; 763 A; 466 C; 511 G; 737 T; 0 other;
     ccctagaacg gtcgggctgg gtctgtgaga cccactagtt tttgtttcac tgattttata        60
     ttcttataat tgctgatttg actcgagcgg tccgctagct tcctgaaaca cccgagagaa       120
     agcgttgaca gcttgaatga ggtttttcat tgtttagtca ttgtttggca gtctttcaaa       180
     aagcgcgcgg gtctgtcaga cccagcccga ccgtctacgt aactaatttc tgccagtgcg       240
     atcccgctta tattttgttg tatcgttgag ttaccagtta ctttgcggac tatttgtgat       300
     ctcctaacac caagctatca gtcaatagtt tatagtataa aatggcacga gaaagtctct       360
     cgtacagtga aatatacaaa attttatatg acgatgacag tgaagtaaat gattctgatg       420
     cggacccaga ctttgaaata aacagtgacc atgaaagcaa tagtgaagtt agtggtgatg       480
     aagaggaaga tgttcagcct tctgccagca ttgatgcacc tactgttgtt gattcaagta       540
     cagctcatca ttctgactca ggtacgtcac ctataagctt ttacaaagga aggaacggag       600
     caactaaatg gagaaaaact tgtttcccac aaagcgttcg tacaagacgt cacaacatag       660
     ttaccatgca tttgcctgga agtattcgag ctgcgatgga tgtacattca ccgttagaat       720
     catggcagtt attttttagc aagtcattga ttgaaactgt tcttggatca accaatatct       780
     acattgattc agttcgagac aagtacaata gtgacccaaa catggctagg cctacaagta       840
     ttgatgaact aatggcatat tttggccttc tttacttagc cggaacattg catggcggta       900
     aaatgaatat tgaagacttc tggaatacag atgggacagg aatagaaatc tttcgagcaa       960
     gtatgtcatt gaaaagttca gatttttgac tcgatgtatc aggtttgaca acatccatac      1020
     aagggaagaa agaaaagcac aagataatct tgctgccata agaaccattc ttgatatgtt      1080
     tgtctccaac tgcaattcat attatgctcc atcagaaaac gttactttgg acgaaatgct      1140
     cgttccctac agaggcaggt gcaggttcag gatgtatatc ccaaataaac ctgcgaagta      1200
     tgggatcaag gttttcatcc tggcttgttc taaaacgtac tatgtaaaac atttggaagt      1260
     ctatgcaggt gcacagccag aaggaccgta caaagtcagt aacaaggcag acgacgttgt      1320
     tttgcgtctt gtagacccag tgaaagggtc tggaagaaat ctgacagttg acaattggtt      1380
     tacttcttac ccaatcgtca agaggctgtt acatgagaag aatataactg ttgttggtac      1440
     gttaaaaaaa aagcctgaaa ttccgtttga gtttttaccc aaaaagtcta aagaagtgta      1500
     ctcaagtatg tttggatttc aggaatacat cacattgctt tcatatgtac caaaacggaa      1560
     caaatcagta ctgcttttgt catcaatgca taatgatgat gaaattgaca gtgacagcgg      1620
     cggaaagaaa aagccaagta taataacgta ctacaacaaa accaagggcg gcgtagacgt      1680
     tgttgatgct atgtgcggtg aatacacagt tgccagagga acaagacgct ggcctctctg      1740
     tctctttttt cagatgttga acattgcagc tctgaatggc tacattgtgt tcaaagccaa      1800
     cggaaatgtt tcagttagaa gagagtacct gagaacgcta gggaagtctc tcgtaacacc      1860
     atatttgaaa atgcgcgcaa cccaggcaaa ccttccgcgc caaattcgca ggcttgcttc      1920
     taacctctcc ggcacccaag aacaaggcat agttgaagat ccacaaccag ggagaagggg      1980
     aagatgctac gaatgcaaag acagcaaaac aaaatacttt tgcaaagttt gcaaggtgtg      2040
     gttatgcttg gcgcatgcag aaatagtttg cggtgaatgt tttgaaaagt gacgatttta      2100
     gaggcctata cctcacaaac tattcatatg ttcacaattt ccatttatgt agtgataatt      2160
     caacattttt gcttcttagt tattgtactt attctcattt atattcatat ttcaatgaaa      2220
     ttttcttgta tattctgttt actaacattt ggtactacaa agttgtatgt ttttcagttt      2280
     tattttatta taattattgt acaattcaga caggtaaaat aatgtcactg tatcatttag      2340
     tactatctga ataaaataaa aaatagtcat tttatgaaaa tatacatttc gtcacttgtt      2400
     aaaagtgttt tatatattgg gtctctcaga cccagcccga ccgttcatga aacttttttc      2460
     gcccgaccgt tctaggg                                                     2477
//
ID   piggyBac-9N1_LMi repbase;    DNA;    INV; 944 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-9N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-944
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3338-3338 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 944 BP; 279 A; 191 C; 188 G; 285 T; 1 other;
     ccctgcggcg ggcgcgtggc ggcatacagt gccgccaatt ttgttttctt tcaataatta        60
     cgtcagcgtg ccgagcacgc aacaatggtg ctagatatgc ttcgattgtt tagtcacgcg       120
     ccaaactaca ttactgcgcc accaatatac tcaccataac agctgtgact gacctgtgga       180
     gtggacgact gcaccgagac ggcactgcgt accgcacgcg cccggtaatg taagtacatg       240
     tagccgtacc actgtcggat gttttgatga ttagaagstt tgttttacaa catttgaaag       300
     aaagggctca gctctctact ctaccaagag atattcaaga atttctgtca cctcatcgat       360
     caattcccgc caatcacgat gagactgtaa gaaggtgtgg gaggtgccat ctttgtggtg       420
     gtaaaaagaa ttataaaact actgtcactt gcaatagctg caaaagattc gtttgcaagc       480
     aacattgcca caatgttgtc acatgtaatg attgcagagc ttctccggag gaagaaagtg       540
     tgtgattgtt gatatgtatt tactgactgc cttattcttt attattacta caaagatttt       600
     atacatatta cacttttttg taaaacttgc tttaacaatg gtaaataatc gaatcatatc       660
     tgtggttata atttatttag aatttgttat taaagttgcg cttacgaaat atcctggaaa       720
     cttatgtcag atatactgta acaattttaa ttttcccatg caccgtctat atatgtatac       780
     agatcatatt aaaagttgct gttaagaatg atgttataca caataaataa ttaattccac       840
     ccaaaaatta aaaaaaatag cttttctatg tatttaaatg taggcggcac tgagtgccgc       900
     acgcgcccgc tgacgtaaca atcttaagcg cgcctgccgc aggg                        944
//
ID   piggyBac-9_LMi repbase;    DNA;    INV; 2489 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; piggyBac-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2489
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3339-3339 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(538..1743,1584..2087,2098..2346)
FT                 /product="piggyBac-9_LMi_1p"
FT                 /translation="MPHDDCHFYIGKDQETLWINNPLALPGKTKRKNIIKV
FT                 LPGPKLNGREAKTEIESFLKFFDPEIIDYVVENTNKYINNKRSSVNYSRAR
FT                 DCKTTSASEITALLGALFLIAVQKGGRTNVLELWASNGTGMIILRAAFSYK
FT                 RFLFLLRSLRFDDTSTRKERLATDKLAAIRNLHSAFLNNCRNNYSPGEFTT
FT                 IDEMLVPFRGRCGFVQYMPNKPAKYGLKLYALCDSKTFYTFNFEVYCGRQN
FT                 PGPYVASNQPMDIVKRLVEPIKGTHRNVTTDNYYSSYPVAQHLLENGLTFI
FT                 GTLKKNKKEIPPEFLPNRSREIGNCLFGFQDDFCLVSCQTKRNKAVLFLSS
FT                 MHETAEIDTATGKSVVNLDYNATKGGVDTVDYMCTSYSTQRTTRRWPLHCF
FT                 FVIWILLGNRHRYRQVCCKFGLQCNKRWSRYCGLYVYILFYTKDHKKMALT
FT                 LFFRYLDIAGINSQVLFFANNPEKRFRRRTYLTNLALALMDCHLKERAQLS
FT                 TLPRDIQEFLSPHRSIPANHDETVRRCGRCHLCGGKKKKTTVTCNSCKRFV
FT                 CKQHCHNVVTCNDCRASPEEESVYVFTDCLILYYYYKDFIHITLFLKLALT
FT                 MVNNRIISVVIIYLEFVIKVALTKYPGNLCQIYCNNFNFPMHPLYMYTDHI
FT                 KSCC"
XX
SQ   Sequence 2489 BP; 780 A; 488 C; 510 G; 711 T; 0 other;
     ccctgcggcg ggcgcgtggc ggcatacagt gccgccaatt ttgttttctt tcaataatta        60
     cgtcagcgtg ccgagcacgc aacaatggtg ctagatatgc ttcgattgtt tagtcacgcg       120
     ccaaactaca ttactgcgcc accaatatac tcaccataac agctgtgact gacctgtgga       180
     gtggacgact gcaccgagac ggcactgcgt accgcacgcg cccggtaatg taagtacatg       240
     tagccgtacc actgtcggat gttttgatga ttagaagctt tgttttacaa ctctgtgggt       300
     gtatgatgat ttagttatta acattgcttt ggtattagaa ttattttatt gtctcccagg       360
     tccgcacaaa ggaaaggact aacaccagaa gaaattgagc gtcttcttct gcaatcatct       420
     gacgaagaag attacgctga tttctctgac agcgatgagg aagcagaaat agttgaaact       480
     gcagatcatt ctagcgaatc tgagcagtca tgcgttgacg agaatgaagt gataggaatg       540
     ccacatgatg actgccattt ttatattggt aaggaccaag aaactttgtg gataaataat       600
     ccgttagcac taccagggaa aacaaaacgt aagaatataa tcaaagtcct acctggcccg       660
     aaactgaatg gtagagaagc taaaactgaa attgaaagtt ttctcaaatt ttttgatcct       720
     gagataattg attatgttgt tgaaaacaca aacaagtaca taaataacaa gagatcatct       780
     gtgaattact caagggctag agattgcaaa actacttctg cttctgaaat aacggctctt       840
     ttaggagcac tgtttctcat tgctgtacaa aaaggaggac gcacaaatgt attagaactg       900
     tgggcatcaa atggaacagg aatgattatt ctaagggcag catttagcta caagcgcttt       960
     ctgttcttgc tccggtcact caggtttgat gatacttcta caagaaaaga acgactagca      1020
     actgataaac ttgctgccat ccgcaatctc cactcagcat ttctgaacaa ctgcagaaat      1080
     aactacagtc caggggagtt cacaaccata gacgaaatgc ttgtcccatt tcgcggacgt      1140
     tgtggttttg ttcagtacat gcccaataag cccgctaagt atggattgaa gttgtatgca      1200
     ttgtgcgata gcaagacatt ttatactttt aattttgaag tatactgcgg cagacagaat      1260
     cctggaccat atgttgcatc taaccagcca atggatattg tgaagagatt ggttgagcca      1320
     atcaagggaa ctcacaggaa tgtaactacg gacaactact acagtagtta ccctgtagcc      1380
     cagcatcttt tagaaaatgg gctaacgttc attggaacat tgaaaaagaa caagaaggaa      1440
     attcctccgg aatttttgcc gaacagatcg cgagaaattg gaaattgtct tttcggattt      1500
     caagatgact tctgtcttgt ttcgtgccaa acaaaaagga acaaggctgt gcttttcctg      1560
     tcatcaatgc atgaaactgc tgaaatagac accgctacag gcaagtctgt tgtaaatttg      1620
     gactacaatg caacaaaagg tggagtcgat actgtggatt atatgtgtac atcctattct      1680
     acacaaagga ccacaagaag atggccctta cattgttttt tcgttatctg gatattgctg      1740
     ggataaattc ccaggtcttg ttctttgcaa acaatccaga gaaaagattc agaagaagaa      1800
     cctatctaac aaacctggcc ttggctctga tggactgcca tttgaaagaa agggctcagc      1860
     tctctactct accaagagat attcaagaat ttctgtcacc tcatcgatca attcccgcca      1920
     atcacgatga gactgtaaga aggtgtggga ggtgccatct ttgtggtggt aaaaaaaaaa      1980
     aaactactgt cacttgcaat agctgcaaaa gattcgtttg caagcaacat tgccacaatg      2040
     ttgtcacatg taatgattgc agagcttctc cggaggaaga aagtgtgtga ttcttgatat      2100
     gtatttactg actgccttat tctttattat tactacaaag attttataca tattacactt      2160
     tttttaaaac ttgctttaac aatggtaaac aatcgaatca tatctgtggt tataatttat      2220
     ttagaatttg ttattaaagt agcgcttacg aaatatcctg gaaacttatg tcagatatac      2280
     tgtaacaatt ttaattttcc catgcaccct ctatatatgt atacagatca tattaaaagt      2340
     tgctgttaag aatgatgtta tacacaataa ataattaatt ccacccaaaa atttaaaaaa      2400
     aatagctttt ctatgtattt aaatgtaggc ggcactgagt gccgcacgcg cccgctgacg      2460
     taacaatctt aagcgcgcct gccgcaggg                                        2489
//
ID   piggyBac-N10_LMi repbase;    DNA;    INV; 1265 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1265
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3223-3223 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1265 BP; 404 A; 244 C; 271 G; 345 T; 1 other;
     cacattcaac actatgcccg tacgccatac gggcgcgcaa gtttcggccg tgtggacggc        60
     gcccgtatcc cgtacgggcg ccgcttttac ggtcgctgaa aggtgttttt caccgcacca       120
     catggctggc ggctgtaaga taactgctgt agttcatatt ttgttcacta gatgaagcag       180
     cagtcgatgt gttctgtgta tcagttgtat aaaatacatt agccgtcggc actgttgtga       240
     aaaacagaaa agccttacca acaagcttca aaacaaagaa actgaagcaa aatgaaatga       300
     tatttttgag gaatgggccc attctagcgc tgaagtggaa aaataagcgt gatgtatact       360
     gcctttctac aaaacatcag gctaccacaa aagacgtccc agtacgttca aaagatggga       420
     ttacaacagt aatgaaacca gacgttgtaa ttgactacaa taagaacaag actggtgtag       480
     atcgtgtgga tcagctgtac agttactacc cattcgcacg aaaaacaatg aagtggtgga       540
     agaaactgtt ctttcatgtt ttcctaatgt ctgtcgtgag cagttttatt ttgtacaaag       600
     acgtcagtaa acagaaaatc tctcttgtgg acttcatgaa aaacgttagc ttgacgttgg       660
     tagaaaaagg tggaggcttt agatctgtag agccaacacc aagcactagc ctggacagaa       720
     attttggtcg taactttcca gaaaaagtac ctcacactgc caacaaagta aatactacac       780
     ggtattgcaa agtttgctcc gacaacggga agaaagagac tggcaagcgg gtaagaaagg       840
     aaagcagatg gtggtgcaaa gactgcaacg taggactctg cgtacctcag ggctttcagg       900
     attaccacct gmaagtgaat tatgtataac atatatgtaa tctttttata tcataaaata       960
     ttgaataaaa aaacctattg tgaaccaaat tctttttatt ataaacacca gaaatcatgt      1020
     tatgaaatgt aaaagtgttt ccatgtgaag gtttctcatg ttttttggaa tgctggtaca      1080
     cctctaccga tgcaagcata catataagct tacatttttc ctaatctata aaggatgggg      1140
     tttcaaatga tgctagaaat ttgcctttct ggctcttagt tactgtacag ttattcatta      1200
     acgttacata aaaatcgcca gttcacctgc acagtcgagg tacatacata gcagtgtgga      1260
     atgtg                                                                  1265
//
ID   piggyBac-N11_LMi repbase;    DNA;    INV; 1687 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1687
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3360-3360 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 1687 BP; 550 A; 307 C; 337 G; 493 T; 0 other;
     cccttaacca cctgacgtcg gtctcagaga ctctcgcggt tttgtttcta atttttttcc        60
     attgttattt gcgtgaaaca atcgtgagtc aacgtacttt ctccgttccc ctgccagttc       120
     gtggtgagcg gtcggcagct ccagatgcgt gtgttctaag aaattaaggt aatatttttt       180
     ctgctggcgg tctgtgtgac cgacgtcagg aggttacgta acattagcta aattataatt       240
     attttacttt tgtagggtaa caatgtctca aatggagaaa atggagagag atatagtccg       300
     atggatagac gaagttgaca tagattctga agacttatta taaataccag aacttctgaa       360
     tgaagactgt agtgatgtac aagatgttcc agtggatgac gtcactgaag acgtcaatga       420
     tgctcaaact ggatatctgt tggacgcttc tgaagattct gatggcaaag gtctaccagc       480
     tgagtaccaa aggtcagcca acctaccaac gcagttttgc gactaataac gtcgatagaa       540
     ggtatgcaca gaaacgtgac gaccgataac tgattcacat caatggagct actgaatgtg       600
     ctaaaacaaa aacaactgac actagtgggt accatgaaga aaaataagcg tgaaattccg       660
     cctcagtttc ttcccaggcg tgactgagaa gtcggatcgg ccgtttttgg ctttacatct       720
     aacactaaca tcttttgtac caaagccaaa taaatctgtg cttgttttgt ctagcatgca       780
     tcatacccaa gcgttgattc aaatacgaag aacccggaaa tgatcatatt ttacaacagc       840
     acaaagggag gcgttgacat gctagatcag aaatgtgctg tctactccac gtctagacga       900
     actcaacgat ggccaatgac aatattttgt aaaatccttg acatatgttc aagaaacgcg       960
     tacattttta gtaacatgaa ccaagcacag gcaaaggtac cacgcttgac tttcataaaa      1020
     aaaagttggc agaagacctt atagagcctc acttgaaacg ccatgtgcag agttttggcc      1080
     tgccaagaga acttcagtgc accatacgtc gaattctaaa aatggaacga atacccagta      1140
     cctcatcaac cgaaacttca gagaaacatg aaaaaagaaa aacgtgttcg acttgtgatc      1200
     ccaaaaagaa aagtaaatca gcgtatttat gttttgcatg tataaaacct atttgcgttg      1260
     aatgcagtca aaatatgtgc gttgaatgtc gccgcaattt gtgtttgtgc cttgcaattt      1320
     tgaaaaaaaa tgttaatatg tgcaaaaaat tacttgtatg ttatagataa gatatagaac      1380
     gtttgataaa tatgtaagaa tattgatatt acaagaattt gtactgccag atctaaaaaa      1440
     ttttaagtct ctagaatttt acctaaaatg agtacacttt tgttaattgc tgatttttta      1500
     tatctataag taagcttttt cacattttaa agttgcatta tgattttaaa tattatgaaa      1560
     acaaagacgt gacttcaatt tattgcaata ttttaacgta ctttgacata aaattaaaaa      1620
     aataagtggt ctctgtgacc gccgtcaggt ggtagtgtat ctgaaataca cgtcaggcgg      1680
     ctaaggg                                                                1687
//
ID   piggyBac-N12_LMi repbase;    DNA;    INV; 1218 BP.
XX
AC   .
XX
DT   10-JUL-2014 (Rel. 19.12, Created)
DT   10-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1218
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3224-3224 (2014).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
SQ   Sequence 1218 BP; 378 A; 216 C; 243 G; 380 T; 1 other;
     ccctttcgtg accagtggga catttgtgtc cctgagttca cagggatata aaaatcccac        60
     atctgtgtgg tgctgccatc tagtgttgaa cgcatcaaca gtctggagcc aactggcttg       120
     ttgtttggcg tctactgcac tgttatcgct tatttgtttc agttgtgcta gtgtgcccgt       180
     gttttggcag ttttatgtgc tatttgtctt gtctgaaata gataagctta gtaaaggtat       240
     ttattgtttt ctttagtttg tttgctagaa atatacagat ttgtgcacat atttattggt       300
     aaatcacttc tacattcgtg gtttccttat ggccagcgtg tgtacagatt tctattgtgc       360
     cttttgttca tatttgtgta atgattctat aatattattt atttctctta atttacatac       420
     tggaagccac gacactgcat tcagctgttt cgttggaaac taagaaggta aattgaatct       480
     gacactcgcc agaacacaca aagagaataa attatgtaac ttttagtaat atcttgtcat       540
     ttcctgtttc tagaaatgtc gagattggaa aaaagaggaa attttggact acttgttttc       600
     gctgcccgat gatgaagtgt tgtctgaaga cgaatgtgwt gaagaggcag cagaagaact       660
     tatagcacct gatgactcaa atgtgtgaca ggagtacttg caaatgacag cgagaactat       720
     aaagagaagg ggaaggcatt catcacaaaa aacaaaccag gagtttctgg cgttcctgat       780
     gatgtgcgct tatgcgcagt tggaaaacat tttccaacaa ggagcacaag gaggcgatgc       840
     agacaatgca gcacacggaa gcaagagaca tggacaaatt tcatatgtag ctactgcaaa       900
     gtaccactat gtattcagcc atgtgttgaa aaatttcaca aaaatgttaa gttctgaata       960
     aataaatatg tttgacataa taatggtact aacattctta tttgtacaga tcctaatccc      1020
     tactaaaaaa acattggttc cctaaattta ctcctcctcg agtccagtgg gacatatacg      1080
     tcccacataa aataattgta aaactataaa taacaaccga aatttagaaa catggcctga      1140
     ctcagtaccc attccaaaag caagaaacca attgttacag taatatgcga aattttaatt      1200
     aattcggtca cgaaaggg                                                    1218
//
ID   piggyBac-N1_AAe repbase;    DNA;    INV; 948 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous piggyBac DNA transposon family from Aedes
DE   aegypti.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-948
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1315-1315 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
CC   TTAA TSDs. Both termini are ~87% identical to those of
CC   piggyBac-1_AAe.
XX
SQ   Sequence 948 BP; 323 A; 169 C; 146 G; 310 T; 0 other;
     ccctttcctt cccatggtag cacaggtgat ccaccacttt gcgtatgtcg tatataaact        60
     gtacaagtta gatcatatcc attttttcac cacatgttca catatgtttc atgaaataat       120
     gtacaaagtt tcatcaaaaa taatcacttg gattttcagt taaagcacaa taaccgaagt       180
     aaagtcagca ttttttctaa tttaaataaa gtggattttc aaacttctat atttagaaat       240
     ataaacatga ttttcaccaa acaaaaataa aaacaagctc aattgaatta cttttccaag       300
     attcagttga gtttttagaa tattctttac acaaaactat tgattttgcg gaaagttagg       360
     tggatcactg gtgatccatt gggaataaaa cgacattttc gtcaattctg ttctaacctc       420
     tcttttcgaa aacaaaacta tcatcatgtc ttggaaagtg attttaagtt ggaaagaaaa       480
     ttgtaagacg ctgagggcga tcaacaaacc aacatactca gcagtagcta taagcacggt       540
     atgacggagt agaacattgg cccgttgaat accgttctgt gcaaatatca ataatcattc       600
     agttcattta aatgcactaa gtgtgatgtt tgcttgtgtc tcaaaaaaga caaaaacttc       660
     ttcccagctt tttattttcc tccagaattg acgagaggtg tgcagaacac actgttcaaa       720
     taaattgtat gagtaaaaac aatgaaatgg aaaaaaatat tgatgcctct ttcttaccct       780
     agttgcagtc atcttcccaa tggatcacag gtgatccatc acaaaaaata tttttttcag       840
     ttctattcat attttcgagt aaaactttac atcttttgtt ctggtgattt atccagatat       900
     cacattttct atttttaaac tacgaaaaac ctcgtgggaa agaaaggg                    948
//
ID   piggyBac-N1_BM repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   30-MAY-2008 (Rel. 13.05, Created)
DT   31-MAY-2008 (Rel. 13.05, Last updated, Version 1)
XX
DE   A piggyBac nonautonomous DNA transposon from a silkworm - a
DE   consensus sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   horizontal transfer; piggyBac-15_SM; piggyBac-N1_BM.
XX
OS   Bombyx
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae.
XX
RN   [1]
RP   1-242
RA   Kapitonov V.V. and Jurka J.;
RT   "Families of autonomous piggyBac element from the freshwater
RT   planarian genome and two clear examples of horizontal transfer of
RT   piggyBac transposons between a flatworm and insect.";
RL   Repbase Reports 8(5), 536-536 (2008)Repbase Reports.
XX
DR   [1] (Consensus)
XX
CC   piggyBac-N1_BM is a relatively old family of nonautonomous
CC   piggyBac transposons, characterized by 15-bp TIRs (one mismatch)
CC   and TTAA target-site duplications. The consensus sequence was
CC   reconstructed based on multiple alignment of 25 copies that are
CC   ~93% identical to the consensus). The genome contains ~200 copies
CC   of piggyBac-N1_Bm that are ~90% identical to the consensus. The
CC   complete piggyBac-N1_BM DNA sequence is 88% identical to the
CC   planarian piggyBac-15_SM (Schmidtea mediterranea). piggyBac-N1_BM
CC   is a nonautonomous deletion derivate of piggyBac-15_SM (pos.
CC   1-196, 2312-2356). The high nucleotide identity, including
CC   non-coding regions, between these transposons in two species
CC   diverged from their last common ancestor over 500 million years
CC   is a clear evidence of horizontal transfer of piggyBac
CC   transposons.
XX
SQ   Sequence 242 BP; 63 A; 39 C; 36 G; 104 T; 0 other;
     cactaaacat accataacgg gtcaaatgac ccattttgaa cttttgcatt gaaaatgcac        60
     gtatcatctt attgcttttg cacatttgac ttcatgactt tttcttacca attaatctac       120
     agttattata ctattttttt tttttttgtt ttgttttgtt tattttgagt aatacttgtc       180
     gtataccgtt atctacccgc tatggtagaa ataggtacca gtaagtgttg gtatgattag       240
     tg                                                                      242
//
ID   piggyBac-N1_CQ repbase;    DNA;    INV; 617 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous PiggyBac DNA transposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-617
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 99-99 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. The TTAA TSDs and CCC..GGG termini indicate that it
CC   is
CC   a non-autonomous piggyBac element.
XX
SQ   Sequence 617 BP; 246 A; 94 C; 101 G; 173 T; 3 other;
     ccctctacaa cccaaccccg cctctagacg ggcttcgatc taaaaaatcg ccaaaaatcc        60
     attttccaac caatttttga tcttcaaaaa gcattggaaa gaagaactct taaaattttg       120
     gaaaatttca gggttggaag tttgacttgt tttatgtgac tttgccaatg tttttaaaaa       180
     tgtcattttt ttaggggtca actttggctg tgttttttac taacatttcc tatattttma       240
     gtaaaaagaa gtatgcagta atttttctag tgccccagac tatgcctcta cgcatttttt       300
     tgcaatttaa atgatgatgg tkccattcta tagcagaaaa tgtgaaaaac atgcaaaaaa       360
     ttgaaaaagt kactgtaaaa acatgaaaaa attagatagg caaaatgtaa tgataggagg       420
     tggtagagta ggccaaatac taccaaaaac aaacataaac taaacaagat aaatgcaaat       480
     taaaatacta aaaatgaaac aagaaaaaca taaaacaaga gaagtaaagt ttttcgtaga       540
     acaaaagttg ctcaaaatga cctcctgaac acgggaaaaa taaaaatttt cgaaaaaaaa       600
     atttgggcag tagaggg                                                      617
//
ID   piggyBac-N1_DSuz repbase;    DNA;    INV; 1312 BP.
XX
AC   .
XX
DT   19-JUN-2021 (Rel. 27.01, Created)
DT   08-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1312
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 115-115 (2022).
XX
DR   [1] (Consensus)
XX
CC   95% identical to consensus. TTAA TSDs.
XX
SQ   Sequence 1312 BP; 405 A; 245 C; 254 G; 397 T; 11 other;
     ccctccgttg tacacctttt ctaaaacctt cggttgtaca cccgggtctg gccagacccc        60
     tatgtattta cctgcatttg tatgggaata tatggcatat gcgaggtcaa ttagaagcat       120
     cgcaagtata ttttttgaac ttcttacctc tctcattggt tttggcatgt attgagctac       180
     ctacagaagc aaaaataata gaaaaaaatt tttgggtttg tgaagaaata caatttttgt       240
     tttgtccttt tttgttcttt attttgactc atttcaaaga aggttgatga aagaaaaagc       300
     gacgaactga gaaatgacgc ttggtttatt catacgattt tcgatgcttg caaggaccaa       360
     tgttttcgat aaagtcgtca gaaaatcgcg caagattcca ccagaaatga agaaggacam       420
     ttctcgccct gkgctttcgt cgttgtttgg tttcawtctg cagctatgsg ccgaaaaaga       480
     atagagcggt taatttactt tcaaccgttc attataataa agcgtgtgam ggcgaagmaa       540
     aaaaacmatt ggccattcta tattataawg cacaaaaagc cggtgtcggt tgtatggatc       600
     aaatggtcac gcatttcaca tsaaaacggc caacaagtcg atggaccttk gctttctttt       660
     gcaacatgtt ggatgtcatg gcattggcag cgttttgtat ttgcaaggaa gttgatgggc       720
     tcagaaaagt gatgcgagac gcgattttct gacgacttta tcgaaaacat tggtccttgc       780
     aaacatcgaa aatcgtatga ataaaccaag cstcatttct cagttcgcca ctcgtttggc       840
     aacagaatca tcgctttttc tttcatcaac cttctttgaa atgagtcaaa ataaagaaca       900
     aaaaaggaca aaacaaaaat tgtatttctt cacaaaccca aaaatttttt ctattatttt       960
     tgcttctgta ggtagctcaa tacatgccaa aaccaatggg ggaggtaaga aattcaaaaa      1020
     atatacttcg atgcttctaa ttgacctcgc atatgccata tattcccata caaatgcagg      1080
     taaatacaag ggtccagcca gacccgggtg tacaaccgaa ggtgtaactt tttaaatcct      1140
     ttttttcgtc ctgttctagg atctttttta aatcctcata tgcataaatc gatagagaat      1200
     taaattttag gaagctacct ggaaggccaa gtcgctacct ataatagaaa tgtgttaaat      1260
     ttaagttcaa agtcaaaaaa ggtctggcca gacccgggtg tacaacggag gg              1312
//
ID   piggyBac-N1_DWil repbase;    DNA;    INV; 658 BP.
XX
AC   .
XX
DT   23-FEB-2007 (Rel. 12.02, Created)
DT   23-FEB-2007 (Rel. 12.02, Last updated, Version 1)
XX
DE   A family of piggyBac non-autonomous DNA transposons - a
DE   consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_DWil.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-658
RA   Kapitonov V.V. and Jurka J.;
RT   "piggyBac-N1_DWil, a family of non-autonomous piggyBac DNA
RT   transposons from the Drosophila willistoni genome.";
RL   Repbase Reports 7(2), 125-125 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a family of non-autonomous piggyBac DNA transposons. The
CC   piggyBac-N1_DWil elements are ~5% divergent from their consensus
CC   sequence and are characterized by the TTAA target site
CC   duplications.
XX
SQ   Sequence 658 BP; 218 A; 97 C; 92 G; 251 T; 0 other;
     cactagatct accacaccag tcaaaatgac tggttttact ttttatttca taaatattga        60
     ctaagtgttt ttattttttt tcgatattat gttatgactt tttaaataac cactaaatac       120
     atacaatttg ataagttaat ttcattttgt gttcatagga aaagagattt ttttttgttt       180
     ttggcactta taccgtaacc agtcattttg actgggtata tgattgatat gcaaatattt       240
     tatattttgc ccttttagga agttcccttg tttgaaacat cactgtttgt aagtttgttt       300
     acacatccct gaagatctca cagctgaata tcagttatca agccgaagaa aggcaaatga       360
     aaatcaccgt ccagtaacgc agaatccccg gcctgtacgt aaatggtgcc aaatagggca       420
     ttgtaacaac aacaagaaaa aagtttctat ttgtaaaaca tgtaacaaac atgatttttt       480
     tgattaaaac taaaacacaa ttgatgcatt tttattattt tatttatatt tttttatttc       540
     tcattaaatc ttttaaagga ttacgaattt taatataaaa taataggact tttcttaacc       600
     agtcaaattg actggctctg gtataaatag gtatacaaat ttcttggtaa atctagtg         658
//
ID   piggyBac-N1_HSal repbase;    DNA;    INV; 745 BP.
XX
AC   .
XX
DT   27-JUL-2012 (Rel. 19.04, Created)
DT   27-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   piggyBac-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-745
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1009-1009 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 745 BP; 242 A; 131 C; 133 G; 239 T; 0 other;
     ttaacacgtt gactgccacg tcaaatttat atgatgctct cagtggggca taagagaatt        60
     tttcactatt ctaagcatat aatgacaaaa taataaaaaa tatggttata tacgatcatg       120
     cacttatcca tagtgcgttt atcttgttgg tgatcacgag ggccaccgtg gccccttggt       180
     gcactcggtt actcttgata actgtttttg aatattttct tataaaatgt aagaaaatga       240
     ctatctacga cgtttgcgcg ataatgtaca ttcagaggca ccagcctcat cgaatataac       300
     tgtccgaaaa gattacgatg aaatgcaaaa gaaggaagag ctagcatacc tgcgaaaatt       360
     tttcaaagta tgttacaaaa agaacgttgc aaatcatggt tcgaaaaatg ctaaaaattg       420
     gacaaaaaag tcactacata ctgcggagat tgcggtggcc agcctcattt atgcttaaga       480
     tgtttcaata caatacatcg tacttaattt ctgtaatata atatataatg ttttaattaa       540
     aatctttaat tgttgaatag tgcacttttt atttcataat gttgtctagt tagctatgat       600
     gttccaaatt ttttcggttg acgatattca ttttatttta attattttaa acatttgaag       660
     cactccggtc actgatgacc accatggtcc caccgaggaa acaatctccg gtcacaggtg       720
     accaacgtgg cagtcaacgt gttaa                                             745
//
ID   piggyBac-N1_LHu repbase;    DNA;    INV; 1099 BP.
XX
AC   .
XX
DT   30-MAR-2012 (Rel. 19.02, Created)
DT   04-FEB-2014 (Rel. 19.02, Last updated, Version 1)
XX
DE   DNA transposon from the Linepithema humile genome: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-1099
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 383-383 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. TTAA TSDs. The a few terminal
CC   nucleotides are similar to those of piggyBac-1_LHu.
XX
SQ   Sequence 1099 BP; 399 A; 179 C; 170 G; 351 T; 0 other;
     ccctcttcag tcacacttcc gaaaaatgac gtaatagtca ttctgggtga aatccacccc        60
     cgcacctttg cactgcaata aattattgta aaatgcaaag aaaaaaaaaa aaaatactga       120
     gataagtttt ggcccttttt tacaagagca tgtctattat atataagaaa tttaatttta       180
     catatgcaaa aaaaatgttg aaaaaaaaac cgttttgaaa atgacttttt tcacaaaaat       240
     cgttataact ttttttattt ttaacctaaa aaaaaaaaaa aatggtttta taaacctaaa       300
     atgacatgct ttcagacaga tattattact tttatggtct ttccaaaaag tatatttatt       360
     ttgccgaata aagttagaat tttggacgaa agaatgatac ccatgaattt atggaagaat       420
     ctttgtttat tttgaaaaaa tcaatataaa aattataaaa aaattataat gatgtagaaa       480
     aagagtaaat atatcatttc taattattat ttaatgccca tagtgcattc gacacataaa       540
     tatgtgcgat gtttatcgca cattggtcgc ttgcagctcg gacactcaag gtatgttttt       600
     ttgtcggtgc ctctggggca cacttgacag cgtttatgct tctctagttt cgggcggtct       660
     tcggtagtcg ttggcaaatc tctcaacgct aaaatattag caatgccaat tcttatttaa       720
     aaattcttat ttataaaatc gataaaataa caatataaaa atttttttga taattctaac       780
     tttcagaatc attaattata tatttacaat ttgatgttgc accaaaaaaa gaggagaaaa       840
     aaaattgctg cggaaatcaa aattttgacg taatagtcac actgggtgtt atccacccca       900
     caattttgga cgctccgctt cggatggctg ccagaaaagc actaaagagc caactcaaat       960
     aatacctacc tgaatctgta gttaaaggtt caaactaccg gtatatggtg gaacaagtcc      1020
     cattttctca aatttaatgg gccgtattcc agatcaaaaa aaggctgggg tgaaatccac      1080
     cccgtgtgac taattaggg                                                   1099
//
ID   piggyBac-N1_LMi repbase;    DNA;    INV; 1332 BP.
XX
AC   .
XX
DT   25-APR-2014 (Rel. 19.12, Created)
DT   25-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1332
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3354-3354 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1332 BP; 465 A; 256 C; 259 G; 351 T; 1 other;
     cccgcggtcg ctcgcgtata ttgttgtcac gcgataactc ccgtgttaga ttttttctaa        60
     caatgagatc ttgcaccttt tcatctcttt gtgccagaaa aagacacgtt tatacaataa       120
     atcatttctt tgttattacc aaagcattat aaattagtat aaacatggta tggaacatgt       180
     catttgacga atttgtggat gtttgcaaga agagctatag tgccgacgca ctgacaacga       240
     tagacgagat gttagaacca ttccgcggaa gtttcaaatt caggcagtat atagcaaaca       300
     agcctgcaaa atatggcatc aaggtacatg cgctttgtga tgccagaacc ttttatacgc       360
     taaatatgga agtacatgca ggcaaacagc ctactgggcc atatcaagta gcaaatgatg       420
     cagagcacgt ggtgttacga ttgattagac cgattgacaa aacaggcaga aacgtgacga       480
     tggacaatta tttcacatct ataccactgg gtaacaaaat gtatgccaac catagattca       540
     cattagtaga tactctacgg aagaataaaa gagaaattcc accggaattt ctggacgtaa       600
     aatgtaggca actaaacagc agcatttgga gaaaaaccaa gcaacaactg cttcatttgc       660
     tcatacgtct caaaaaagaa acagaaaaag aacgttctaa tgttatccac catgcacagc       720
     gacgattctg tagacgctga cagtggcgaa gcgaacaaac ttgaagwaat tacactccac       780
     aatctcaaaa aaggaggtgt agatgttgtc gaccgttcga aatcagaata ttgtgtttca       840
     agaagaaacc gctggcccct tacactgttt ttcagtttta tatacttcca tatccgacag       900
     agaatgtcat gtactctgta taaacaattg cttcattcaa ttcgtaaaac tcaataagaa       960
     tatctacttt gctcataaaa gacgtaacat gtgctgaaca gtttcaggag aaaacaaacg      1020
     aacacagccg catgttacaa gtacaagaaa cagactaaaa gtgaagcaag gcggttttcc      1080
     acggaaggag aagtaattgt taccttaaga ctcccgtgtt agaaaaaaat ctaacactgc      1140
     gcaccacttc aaataatgcc acaactaaca agctattgtt gaaatttgat tgtcgagtca      1200
     cagattaatt gaatcacgag atatgaaaga atgcatttct agatggtcag ttcattagct      1260
     ttgaaatgtg atggaatatt caagtaaaat cgtaaatgtt agattttttc taacaacgcg      1320
     agtgatcgcg gg                                                          1332
//
ID   piggyBac-N1_PPo repbase;    DNA;    INV; 156 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-156
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2759-2759 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~20bp TIRs. TTAA TSDs.
CC   Classification is based on the terminal structures.
XX
SQ   Sequence 156 BP; 57 A; 24 C; 16 G; 59 T; 0 other;
     cccttaaatg catattgttg ccaaaagtct acaaacaaaa ttatagtttt tattgaaacc        60
     aagacttttt tttattattt ttcccttaat ctgtgactca aagcctatac tgaaatattg       120
     atttcataat taaataaaaa atcatgcatt taaggg                                 156
//
ID   piggyBac-N1_RPr repbase;    DNA;    INV; 1255 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1255
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3386-3386 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 1255 BP; 436 A; 197 C; 216 G; 406 T; 0 other;
     cactaaacct accacgaccg gtcaattgac tgttttttaa atttgattta aattttctaa        60
     ttacagcgtc atcataccgc cattaaactt cacgactttt cctaaaatat gtatacaatt       120
     gtttttttaa tattcacttc ttttcctaat atttgatttt tgagaaaaat ttgtagtccg       180
     tcttaactac cgcgaccggt catttgaccg gctgaatatt ttcattttat ttacttatta       240
     tttaatattt tattttattt atttatttat ttttgtaaca gaattctctc aaaaactcaa       300
     tttgataatg catttatcgg attattgttt gcatgtggtg catatgaggc gaaaaatgta       360
     cgatattgcc cttttcactg gaacaaaaat agggacgagc attcttctca aacactgtga       420
     gcagaaatgt atagacggaa attttcgagg tttattcgag tggatcaaag aaataatcgt       480
     ttacaaaccg ataaatttgc tttgatttct aaattttgga acaaattcgt agagaacagt       540
     caaaactgtt ctaaccaaga gcatatatct cttccaagga cgtttgttcc caacaaagtc       600
     aagatgcaga tttactcagt acatgccaaa taaaccggac aaatttggta tcaaatcttg       660
     gctagcgttc gatgcaataa aaggctttcc atttttggga aaacgtgaaa gcagagaaac       720
     cttcagttcc gcttggggag tttgtcgctc tgaaattagc agaaatgtat acagctcgtg       780
     gaagaaatat aaccgtggaa aatctcggag atggcctcaa caaatagttt tcaatatcct       840
     agacttagcc ccgggataaa tgcatggatt ttgtatcaaa aactaccgga agtgaaattt       900
     caaggcaaaa tttgtgttac cattgcaaaa gcatgacaaa tactagtaca agaacaaatg       960
     gtcggaaaat agccaaataa gatactgcaa aggcaataag actaaaaaat gctgtctaaa      1020
     atgtaaaaag taagtatgcg ggaaatttgc aattgagaag cctgtaatta taaaaaatga      1080
     tgcaaaaaag agtaaaatct acgagattta tttttaaaca aaagaaacta tgctttttca      1140
     ttgttaaata attattatct tcattctaaa ataagaaatt taagtgattt taaagtgcgg      1200
     tcatttgacc ggtcacggta ggaatagtta tgcataaatg tcggtaggtt tagtg           1255
//
ID   piggyBac-N2_AAe repbase;    DNA;    INV; 11951 BP.
XX
AC   .
XX
DT   06-MAY-2019 (Rel. 26.01, Created)
DT   06-MAY-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-11951
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-11951
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 164-164 (2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. TTAA-bp TSDs. The sequences
CC   5822-6196, 6582-7020, 8234-8419 (Mariner) are insertions of DNA
CC   transposons.
XX
SQ   Sequence 11951 BP; 3561 A; 2403 C; 2496 G; 3488 T; 3 other;
     ccttcctgtt gcattcgggt caatatgacc cgaaaccgac ttttgagcac ttgtaacttt        60
     taaacggaac cacctagcgc tttgaaactt tgtgactttt cctattttct ggaaaactgt       120
     gttttggcaa aaaatcaaat ttctagcatg tttctgaagg gcgccacaaa aaaagttaca       180
     cttaaggcat tcgggtcata ttgacccgga tttgacattg caattttgta ggtattttcc       240
     agccaaattt caaacttttt atactcaaaa gaatcgtcag ttcatgaatt ttatgaattt       300
     gagcggtaaa ctaagattga ccgggtttaa cggcttagaa tcggcgacaa acggatcaag       360
     gtttagccat tcttggaaga ccccggaaat gtggccaatt tgctattccc gtagaaacca       420
     gccatgcgac atatcaaaat ttgcagaatt tcatacaaaa aacatccgag gtaatctgag       480
     cagccctggg ccatgttttg gctactcggt ggccaaataa tcggttccgt aggttccaga       540
     ggtcccagta aagtggccaa tttgaaattt ccatagaatc ctgccatgcg acatatcaaa       600
     atttgcagaa tttcatgtaa aaaacatccg aggtaatctg agcagccctg ggccatgttt       660
     tggctactcg gtggccaaat aatcggttcc gtaggttcca gaggtcccag taaagtggcc       720
     aatttgaaat ttccatagaa tcctgccatg cgacatatca aaatttgcag aatttcgtgt       780
     aaaaaacatc cgaggtaatc tgagcagccc tgggccatgt tttggctact cggtggccaa       840
     ataatcggtt ccgtaggttc cagaggtccc agtaaagtgg ccaatttgaa atttccatag       900
     aaccctgcca tgcgacatat caaaatttgc agaatttcgt gtaaaaaaca tccgaggtaa       960
     tctgagcagc cctgggccat gttttggcta ctcggtggcc aaataatcgg ttccgtaggt      1020
     tccagaggtc ccagtaaagt ggccaatttg aaatttccat agaaccctgc catgcgacat      1080
     atcaaaattt gcagaatttc gtgtaaaaaa catccgaggt aatctgagca gccctgggcc      1140
     atgttttggc tactcggtgg ccaaataatc ggttccgtag gttccagagg tcccagtaaa      1200
     gtggccaatt tgaaatttcc atagaatcct gccatgcgac atatcaaaat ttgcagaatt      1260
     tcgtgtaaaa aacatccgag gtaatctgag cagccctggg ccatgttttg gctactcggt      1320
     ggccaaataa tcggttccgt aggttccaga ggtcccagta aagtggccaa tttgaaattt      1380
     ccatagaacc ctgccatgcg acatatcaaa atttgcagaa tttcatgtaa aaaacatccg      1440
     aggtaatctg agcagccctg ggccatgttt tggctactcg gtggccaaat aatcggttcc      1500
     gtaggttcca gaggtcccag taaagtggcc aatttgaaat ttccatagaa ccctgccatg      1560
     cgacatatca aaatttgcag aatttcgtgt aaaaaacatc cgaggtaatc tgagcagccc      1620
     tgggccatgt tttggctact cggtggccaa ataatcggtt ccgtaggttc cagaggtccc      1680
     agtaaagtgg ccaatttgaa atttccatag aatcctgcca tgcgacatat caaaatttgc      1740
     agaatttcat gtaaaaaaca tccgaggtaa tctgagcagc cctgggccat gttttggcta      1800
     ctcggtggcc aaataatcgg ttccgtaggt tccagaggtc ccagtaaagt ggccaatttg      1860
     aaatttccat agaagcctgc catgcgacat atcaaaattt gcagaatttc gtgtaaaaaa      1920
     catccgaggt aatctgagca gccctgggcc atgttttggc tactcggtgg ccaaataatc      1980
     ggttccgtag gttccagagg tcccagtaaa gtggccaatt tgaaatttcc atagaaccct      2040
     gccatgcgac atatcaaaat ttgcagaatt tcgtgtaaaa aacatccgag gtaatctgag      2100
     cagccctggg ccatgttttg gctactcggt ggccaaataa tcggttccgt aggttccaga      2160
     ggtcccagta aagtggccaa tttgaaattt ccatagaatc ctgccatgcg acatatcaaa      2220
     atttgcagaa tttcgtgtaa aaaacatccg aggtaatctg agcagccctg ggccatgttt      2280
     tggctactcg gtggccaaat aatcggttcc gtaggttcca gaggtcccag taaagtggcc      2340
     aatttgaaat ttccatagaa tcctgccatg cgacatatca aaatttgcag aatttcatgt      2400
     aaaaaacatc cgaggtaatc tgagcagccc tgggccatgt tttggctact cggtggccaa      2460
     ataatcggtt ccgtaggttc cagaggtccc agtaaagtgg ccaatttgaa atttccatag      2520
     aatcctgcca tgcgacatat caaaatttgc agaatttcat gtaaaaaaca tccgaggtaa      2580
     tctgagcagc cctgggccat gttttggcta ctcggtggcc aaataatcgg ttccgtaggt      2640
     tccagaggtc ccagtaaagt ggccaatttg aaatttccat agaatcctgc catgcgacat      2700
     atcaaaattt gcagaatttc atgtaaaaaa catccgaggt aatctgagca gccctgggcc      2760
     atgttttggc tactcggtgg ccaaataatc ggttccgtag gttccagagg tcccagtaaa      2820
     gtggccaatt tgaaatttcc atagaatcct gccatgcgac atatcaaaat ttgcagaatt      2880
     tcgtgtaaaa aacatccgag gtaatctgag cagccctggg ccatgttttg gctactcggt      2940
     ggccaaataa tcggttccgt aggttccaga ggtcccagta aagtggccaa tttgaaattt      3000
     ccatagaatc ctgccatgcg acatatcaaa atttgcagaa tttcatgtaa aaaacatccg      3060
     aggtaatctg agcagccctg ggccatgttt tggctactcg gtggccaaat aatcggttcc      3120
     gtaggttcca gaggtcccag taaagtggcc aatttgaaat ttccatagaa tcctgccatg      3180
     cgacatatca aaatttgcag aatttcatgt aaaaaacatc cgaggtaatc tgagcagccc      3240
     tgggccatgt tttggctact cggtggccaa ataatcggtt ccgtaggttc cagaggtccc      3300
     agtaaagtgg ccaatttgaa atttccatag aatcctgcca tgcgacatat caaaatttgc      3360
     agaatttcat gtaaaaaaca tccgaggtaa tctgagcagc cctgggccat gttttggcta      3420
     ctcggtggcc aaataatcgg ttccgtaggt tccagaggtc ccagtaaagt ggccaatttg      3480
     aaatttccat agaatcctgc catgcgacat atcaaaattt gcagaatttc gtgtaaaaaa      3540
     catccgaggt aatctgagca gccctgggcc atgttttggc tactcggtgg ccaaataatc      3600
     ggttccgtag gttccagagg tcccagtaaa gtggccaatt tgaaatttcc atagaatcct      3660
     gccatgcgac atatcaaaat ttgcagaatt tcgtgtaaaa aacatccgag gtaatctgag      3720
     cagccctggg ccatgttttg gctactcggt ggccaaataa tcggttccgt aggttccaga      3780
     ggtcccagta aagtggccaa tttgaaattt ccatagaatc ctgccatgcg acatatcaaa      3840
     atttgcagaa tttcatgtaa aaaacatccg aggtaatctg agcagccctg ggccatgttt      3900
     tggctactcg gtggccaaat aatcggttcc gtaggttcca gaggtcccag taaagtggcc      3960
     aatttgaaat ttccatagaa tcctgccatg cgacatatca aaatttgcag aatttcgtgt      4020
     aaaaaacatc cgaggtaatc tgagcagccc tgggccatgt tttggctact cggtggccaa      4080
     ataatcggtt ccgtaggttc cagaggtccc agtaaagtgg ccaatttgaa atttccatag      4140
     aatcctgcca tgcgacatat caaaatttgc agaatttcat gtaaaaaaca tccgaggtaa      4200
     tctgagcagc cctgggccat gttttggcta ctcggtggcc aaataatcgg ttccgtaggt      4260
     tccagaggtc ccagtaaagt ggccaatttg aaatttccat agaatcctgc catgcgacat      4320
     atcaaaattt gcagaatttc atgtaaaaaa catccgaggt aatctgagca gccctgggcc      4380
     atgttttggc tactcggtgg ccaaataatc ggttccgtag gttccagagg tcccggtaaa      4440
     gtggccaatt tgaaatttcc atagaatcct gccatgcgac atatcaaaat ttgcagaatt      4500
     tcatgtaaaa aacatccgag gtaatctgag cagccctggg ccatgttttg gctactcggt      4560
     ggccaaataa tcggttccgt aggttccaga ggtcccggta aagtggccaa tttgaaattt      4620
     ccatagaatc ctgccatgcg acatatcaaa atttgcagaa tttcatgtaa aaaacatccg      4680
     aggtaatctg agcagccctg ggccatgttt tggctactcg gtggccaaat aatcggttcc      4740
     gtaggttcca gaggtcccag taaagtggcc aatttgaaat ttccatagaa tcctgccatg      4800
     cgacatatca aaatttgcag aatttcgtgt aaaaaacatc cgaggtaatc tgagcagccc      4860
     tgggccatgt tttggctact cggtggccaa ataatcggtt ccgtaggttc cagaggtccc      4920
     agtaaagtgg ccaatttgaa atttccatag aatcctgcca tgcgacatat caaaatttgc      4980
     agaatttcat gtaaaaaaca tccgaggtaa tctgagcagc cctgggccat gttttggcta      5040
     ctcggtggcc aaataatcgg ttccgtaggt tccagaggtc ccggtaaagt ggccaatttg      5100
     aaatttccat agaatcctgc catgcgacat atcaaaattt gcagaatttc gtgtaaaaaa      5160
     catccgaggt aatctgagca gccctgggcc atgttttggc tactcggtgg ccaaataatc      5220
     ggttccgtag gttccagagg tcccagtaaa gtggccaatt tgaaatttcc atagaatcct      5280
     gccatgcgac atatcaaaat ttgcagaatt tcatgtaaaa aacatccgag gtaatctgag      5340
     cagccctggg ccatgttttg gctactcggt ggccaaataa tcggttccgt aggttccaga      5400
     ggtcccagta aagtggccaa tttgaaattt ccatagaatc ctgccatgcg acatatcaaa      5460
     atttgcagaa tttcgtgtaa aaaacatccg aggtaatctg agcagccctg ggccatgttt      5520
     tggctactcg gtggccaaat aatcggttcc gtaggttcca gaggtcccgg taatgtggcc      5580
     aattttccat ttccatagaa tcctaccatg cgacatatca aaatttgcag aattttatga      5640
     aaaaatcatc taagctaatc taagcagtaa tgtgccatgt atcagccatt ctgtggccat      5700
     ataattcgtt ccgtattttc aagaggtccc ggcaatgtag tcaatttata ctttccatag      5760
     aattcaccca tgcgatatat caatatttga tggattttat gaaagaatca cctgatgtta      5820
     tcagtccact ctccacaact cgatattctt taactcgata tcctctatat ctcgatggac      5880
     ttttcagtcc ctttaaattt ccatacatcg tgctctccaa aagtcgatat ttctataaat      5940
     cgatttctcc acaagtcgat gtcacgtaag aggtaatttt ctctccataa ctcgatatct      6000
     atttgaaaat cattcttatt tggggtaact ggatcaaatt cttgttttga ggtgaataaa      6060
     tacttgcaag tcaagaagtt caaaaataaa tgcatataaa aatatgacgt cagaaacaat      6120
     aatagtttgt aaaatactat cagaaaaata atattgcttt cttacagaag tgatcttata      6180
     tgtattggaa atacagtggg attccgtttt tttggcaaaa tcgaaatttt cagttgtcaa      6240
     aaacggaacc gtgccaaaat cggaacccaw ttttttaata tcaaggacta tgttataaag      6300
     ctaaagaccc atcatataga attgtgacag gcgttccata cactttttat tgctgaaata      6360
     tcttaaatga tgttttataa gctttatgta tactatttgt acacatggac catgtgaaaa      6420
     ccataatcgc ataagtgatc tttattcaag aaatgaacaa atcgtcaaaa tagtgttaga      6480
     atacagaaaa actataattt gcggaaaatt ctcaagtctc aaaaattcat aaggactttc      6540
     caggctgcca ctagcaatct ctgaatttcg ctgtaaatct acccgaccag aaccacataa      6600
     caagattata acacattcct atcagcagca gttaaaaata atagaagttg ataaaattgt      6660
     gttatcaagt tggctttgtt ctcaacttgt tatattttaa gttacacatt tataacaaca      6720
     tttcttttat ttttgacatc gaatttatca gcttgttgca tagaacatcc gatgtcatga      6780
     acagtaatat agtttgcaat aattttgtta ttttgtaaca tccttgcaac acattctgta      6840
     ataattttga tataaatgta acagggtttg ttatatttta gtttattgtg gtgcaaattt      6900
     tgttagaatt tttgttattt taactacaaa cggcacatgt tttatgacaa ctggtgatgt      6960
     aaaaaaatca tatcagggaa acacattctg ttataatctt gtttcttccg tctggtcggg      7020
     tattcagaat cctcaagatt ttgtcagaaa tattgaaaat aaaactggac atccacagta      7080
     ttccgctaga aattcacatg ccgccttaga aatcttagga gtttacaatt aatcaacaga      7140
     ttttgcacag cattctcaat aactaaatat acattctcaa gatcccgcaa gaaatactca      7200
     gatttcgctc agtactttca atattctcag tagcccatca taaaacatag gattccatta      7260
     gggtaaaaga actcctagct ccagcaaacg gtcgatagga catcataagg aacattttga      7320
     taaattcatg caaaatcttg atatcttacg cagtataatc tagcctgagc atcactgata      7380
     tagaatgttg gatcgtttct taaaaagtcc aacgtcatac agagtatcta tcgtattcat      7440
     tgaagcgtgc atcgacctta ttgaggatga agtatagtgt aaatcctgtt cttgtgagtc      7500
     atttattgct ctaggtattg tcaaagttat ggattatata ttgacactta tggaatatac      7560
     ttgaaaacga atctacttga aatacgcaat ttattttatg aaattccatg aaaagctaag      7620
     aaacacgact gttatgcttc tacatacgca atacatgtca ttgcacaata aaaataacag      7680
     tgagctgaag tggtgagtta tatacttttt gttcctctta tgacaatact gctttgttca      7740
     aacgagctgt tccaaatctg aagaaaacat acttatatta actgtatcac ctaccggcat      7800
     actcaagtgg gcttgtaata cagcgtgaat gcctgagtaa agatgttgga actctagttg      7860
     agatactcat agagattaac gagttcgtga aacgttgcga acatacgact atctaaaatt      7920
     aaataagcgc gtaaggtact cctaaaagtt tagtgatatt tgggggaata tcggcggaaa      7980
     ttgagctctg aaatgcggta agcgtgaagc tggcttgctt ttcaaatgac taaataaaaa      8040
     gacataataa tatttaccaa aaattataaa ttttaatggc attcgaaaat gttgccaaaa      8100
     acggattcat tcattcggga ggggagtgat tcaaaaatgg agcatgccaa aaacgaaatc      8160
     ccactgtaca agaatttgtt cttccgattt tgtgattttt tgtgtcggta tattctataa      8220
     ctcgataatt ctacattcaa acctcaatga gtcgatattg gaaggaacca tcgactcatg      8280
     gaaatatcga gtcatgggac aaaaatgctt tggaaagctg tttgagggga ccatcatagc      8340
     taccatgaaa ttttgattct agtatggttc catgagtcga tatcgagtca tggaacatcg      8400
     actcatggag gtttcactgt ataaatcagt ggtctcttga acatcgagtt ttggagagtc      8460
     gtttttatgc gacatattaa aatttgaaga atttcataaa ataaattagc tgaggtaaac      8520
     ttagcagtct tggatacttg gtggccatat aatagatttc ggagactcca aggatcccgg      8580
     ttatgtggcc aatttgcagg ctwaccatgt tcaataaagg tacatgggat mggcaaaatg      8640
     attgagatag gcaaaatttc gcctaaattc aaatgcttat aaccttatgg aaaattgatt      8700
     aaattggatg catctggaag aagtcgaccg caaatttgtt ctagtttcag gaacttgctt      8760
     ggccaatggc catgtatatt ggccaccgga cgccggagat gttcccagtt ccccgaggtc      8820
     atgtccaaat ggcatttttc atgtggcttg atattttcgt gcggtgtgag gttatacaga      8880
     tgtttaatat tttccttgaa actagaacta atgagaagtt gaatgccggc ggacgcaata      8940
     atattcgttg gaaatcttcc gatgtatgac aatttccgtg aaactggttc cggaaaatat      9000
     agtcagtcat gtttgtattt ccaatcatat aaatattatc tggagctacc tatatacaag      9060
     tgggcatcga actttgaaat gatgtgtcca gcagtatatt tagaaccatc agatgcactg      9120
     atcattctat agtaggttcc aggtgtccag gggaagtggc cgataaggaa catatctgga      9180
     acaatatcaa tatgggcatc aaacttcaag gttttcaaag ctgatgattt ctgaaccatt      9240
     ttcactacca ccggctgcca cgaccattgt atagttggct ccaggtgccc cgagggatgt      9300
     ggtcaattca aaacatgtcc gaaaacacat caatatgggt atgaaacatc aagatttttt      9360
     aagttgatgc ttctggaagt atttacaaag caacttattt ctttaaccat tgtatagtat      9420
     gttccgggtg ccttggggga agtggccaat tagcaatttg tctggaatca tatcaatatg      9480
     ggtatcaaac ttcaagattt tttaaggtga gcatttccaa aatcacagcc tgttagacca      9540
     ctttatagca ggttccaaga gccccagggg atgtggccat gttccgaatt ggaaatttgt      9600
     gtagaagctt ctggaatcta ctatagaatg gttattatgg attatagtgg tcacatgaat      9660
     cctactgttc atggtagacg gtgattctaa aactgcttcc ggaagcatga attttaaaaa      9720
     tattcaagtt tgttacccat tttgatatta ttccgtgcat gggtgaaatt ggccacttct      9780
     atcggggtac ctcgaacgta ctatacagtg gcaatggcag ccagtggttc tggaagtgtt      9840
     ttcagaagca tcaccttcta aaatattggt acctaatact tatatttggc cacattcctc      9900
     ggggcacatg aaacctacta tatattgatc atggcagttg gtggttctga aataccttcg      9960
     gaagtttgat gctcatattc ctaattgacc acttccccca gggcacccgg aacctactat     10020
     agagtagtca gtgcgtcaaa aagttctgaa tatgctgctg agagcatcat cttgaagctt     10080
     gatgcttaca tggataaagc tccggataat atatacatga ttggaaatac atgactgacc     10140
     atattttccg gaacaagttt tacggaaatg gtcatatttc ggaagatttc caacgaatcc     10200
     gtatgcgtcc gctggcattt aactttctat aagttctagt ttctagggaa aatgtaaaca     10260
     tctatacaac ttcacaccac acaaaaataa caagcgacat gaaaaatgtc atttggcaat     10320
     gacctcaggg aaccgggaac atctctggcg ctcggtggcc aatatacatg gccaagcgag     10380
     ttccaaactt gcttggccat gcaaactaga ccaaatttgc ggtcgactgc tatcagatgc     10440
     atccaattca atattttttt ttataaagtt ataagcattt gaaattaggc aaaatgatgc     10500
     ctatctactg taaatttaat tcgtgatcat tattacggtg atagatgttt tattgaaaac     10560
     aaccgttcga ttttgacacg gttcgattta ggcaacatga aacttttcgg catggtgcca     10620
     aaattggcct ctgaaaccgc taccgtagac acagtgagtc tatttcggct caggatagct     10680
     atgattacct gcagtgtttg ttttcctgaa attctacaag gggttcgtct acaaatgacg     10740
     tagctttcta gtggtgagaa gggagtcgac ggttttgcga cgaaccatgt tttaggtatg     10800
     gtatgcgaaa caggctacga tgggggcggt ggtgtcgaaa ttggccaaaa aatgttacgc     10860
     aatttatgag tggtgccaaa ttttgatatg tcgcatgact ggattgcaca caatccgtaa     10920
     actggctact tcactggggt ctccggaacc aaatccgtgg ccacagagtg gccgttttgg     10980
     cttaggacag ctaatattac ctgaagtgtt tttttacacc aaattctgta aattttgata     11040
     cgtcgcatag ctcgattgta cataaaccgt taactggcca cttaaccgga acctatggaa     11100
     ccggttctgt gactacaggg tggccatttt ggcttaagac agctaggatt acctgaagtg     11160
     cattttacaa gaaaatctgc aaattttgat gtgtcgcatg gctagattgt acataatccg     11220
     taagctggcc agcttaccgg ggcctctgga accgattccg tggccacagg gtggtcattt     11280
     tggctcagga tagctattat tgcttgaagt tttttttcat gaaattctgc aaattttgat     11340
     atgtcacatg gctgggttgt acataattcg aaaattggcc acttcgctgg ggcctctgga     11400
     accggttctg tggccacaac gtggtcaata tggcttatga cagctaggat tccctcagat     11460
     gttttttatt cataaaattc tgcaaatttt gatatgtcgc atgtttgggt tctgcggaaa     11520
     gtgtaaattg accacatatc cggatatctc tggtgtctgt ctgggggctc tgagtcctgt     11580
     tccgtggcca ccagacagtt ctagatgctc caaatgattg atagtagcaa taatttcagt     11640
     tctgatagga agcttctaca tatgcatcca tttgtaaacc aaaacagata aatttcacga     11700
     cccctatcgt gaaaagcatg cccttacaaa aatggccaaa ccttgatctg ttcggcgtcg     11760
     attctgagcg gccaaacccg gtcaatcctt gtgtccggcc cagattctga aaatttatga     11820
     actaacgatt attttgagta taaaaacatt gaaatttggt tgaaaaatgc ctgcgatatt     11880
     actgtgccaa atccgggtca atatgacccg gaatgcctta agtgtaactt tttttgaatg     11940
     caacaggaag g                                                          11951
//
ID   piggyBac-N2_HSal repbase;    DNA;    INV; 591 BP.
XX
AC   .
XX
DT   28-JUL-2012 (Rel. 19.04, Created)
DT   28-JUL-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   piggyBac DNA transposon from the Harpegnathos saltator genome:
DE   consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N2_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-591
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1010-1010 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to consensus.
XX
SQ   Sequence 591 BP; 224 A; 77 C; 87 G; 203 T; 0 other;
     ttaacccttt gtgtggcaca ttttttctac ctgacggatt tctgtgaaat cttgcatttc        60
     tatgtttttt gggtcgctga ttacaaatct gaagtcagat ttcaaaaatt caaaatggca       120
     gatccaatat ggctgccata tagggtaaat tagtgtaagt ctgaataaat gtaaatcaga       180
     tacacgatat aaaggttttt cagatcgtta attacgaatt tcatgtcaga tttacaaaat       240
     tcattcaagt aatttgttta taaaaaaatc tagcgtgcga aaaattctgg aaaaaatata       300
     tattatattt tgacatgtga agaatattca gtaaaatttt cagcctctaa tcttaaatac       360
     tttccaagaa attaaatttt ttttaaatcg cttttttcaa ctttatttgt ttataaataa       420
     ttaaaaatga acaatcggat ataaaaacca tgggaaacat gtaaagtaag tattaatata       480
     tcagaaaaat gtgagatcat acttattttc attaaactgt aaacagtaca tcgtaaaaat       540
     gaaagagaaa aaggtggtaa gtatacttac cactgccaca caaagggtta a                591
//
ID   piggyBac-N2_LMi repbase;    DNA;    INV; 1364 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   28-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1364
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3355-3355 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1364 BP; 401 A; 231 C; 299 G; 433 T; 0 other;
     ccctttagtg accagtggga actatagttc ccacttattt gttttcgcta taagttcagt        60
     gttcccactt ctaacttgtg ctaccatctc tgttagagtg tgctaactac atatagattg       120
     tcaacaggcg cgcgaaagtg gttgtatttc tacattgtta gttagtcaat gcagaagcgc       180
     agttttcgcg ggaaaacaag ccactgtttc gaccataaca gcgttttttg tatagtgtgc       240
     tttccttttg cgtgtgaagt gacttgtgtt gtatttgtct acttttatat ttacggggga       300
     gatagtattc gtgtatattt gctggatatc aatgaaaatt acataaatat tacaaggtaa       360
     gttagtggga actatgtttc ccactgaacg tgtgtgaagt gcagtgtgta tggctgtgca       420
     atcggcattg tagttattgt ttgtttctta ttgtttagaa tgcctggatt catgccagaa       480
     gaggttttga gaattttgta cactttacca gaagatgtag aagattcaga tgtcgatgct       540
     gactctgatg aagattttga gtcaccaaat acttcgcaga ttttgaacaa aagatggaag       600
     cagaagtgaa gtattctgtc cattggctgt ggcagagtac aataaaataa tgggaggggt       660
     ggatcgattt gatcagctgc gagaacggta tgctgtaggt cgtcgttcat ggaagtggtg       720
     gcacagacta tttttctttc ttgtatattt ggcagttgtc aatgcctaca ttatgtggaa       780
     gttacagaag cagaccagct aacatttaga ttgcatttgg caaggcagct catctccggc       840
     ttctcaagtc gtaagcgaag aggaaggccc gttcattttc agacaccaaa aagaggcgtg       900
     tctggagttc cagatgaagt tcgtctggcg aaagttggaa ctcatttgcc aacaaaaggt       960
     actacaaaca gaaggtgccg ccaatgtagc accaaaaaca aagaaaagag gacaaaaata      1020
     atgtgtagca actgtcgtgt acctttgtgt gtagcaccat gcttctctaa gttccatagt      1080
     acgtcacctt agtgaactca atggacaata tgaactaata caaaagtaaa tcaaatgttt      1140
     aatatgcttt ttgtactaaa aataaaggat atacattttt taaattatca agtccagtta      1200
     ctgcaaagtt cggtgggaac aatagttccc actaattttt tatacccgta ggctaaactc      1260
     tcactttcaa gatttaaact atgattttat gtatggcttc ttagcccaat aatagtattc      1320
     ataaaaagtc tacaacttct ggaaataatt tggtcactaa aggg                       1364
//
ID   piggyBac-N2_RPr repbase;    DNA;    INV; 1407 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1407
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3387-3387 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99%% identical to consensus.
XX
SQ   Sequence 1407 BP; 464 A; 226 C; 212 G; 505 T; 0 other;
     ttaacccttt ccagctcgat gatgccatat ggcatcacta gtttaaaatg tattatttct        60
     tgcttaattt tgaccaaata atacaattgg catcatttta gttttctttc atgcctgttg       120
     gggcagcaca agtcgtaatt tttacataat tcttgcccgc gaaaatataa tatgttttta       180
     tttcattgtt gtcaaccacc agaaaatcgt cttcattaca gttgtatttg tgaatttttt       240
     tttgcatttt ttaaagcttt tttgtttctt aattatttgt ttttgtagaa actaagtgtt       300
     atttatcttg aattaggtat gtttcaattt atttaactta tatttatttg tataatcgaa       360
     attttaaaaa tgagtccata tggactcttt gagcaaaact tgactattaa ccattctatt       420
     ttttttatta catagggtat attctgacct gtttttttta acatggagcg catgtataca       480
     cccgaagaag ctataaagat tatattagac ggtaattggt cagatgttga cttagaatct       540
     tcagattctg aagatgaaca aattggggaa gttgatgcca acgcgaattt acccccaaaa       600
     acagactcta attataccac tttaccaaat gaagatgagt tttttactga ggatgaaaga       660
     tcagctagtt cggaaaatat ttcaggaaac ccttccaata atttgcagga tcctgtttta       720
     ccaacccctg aagcaaaaag gaaacctcca aaattattac gcgggaacaa cattagttgg       780
     gtaccagtta gggatgattt tcacttgaat tgtactaatt tttctttcaa taaaaaacac       840
     aatatcactt atggatgtga caagcccata aattattttc aactcttttg ttcgaatgaa       900
     attttaaaaa attttgtgga gcaatctaat ttatattctg ctcaaaagac tgcccaatct       960
     attggcacca caattaatga aataaaaaaa atttttgggt ataaacatca tgagcggaat      1020
     tgtaaaaatg ccaagctata gaatgtattg ggccagagat accaggtatc cttgcggatg      1080
     caatgagcag aaatcgtttt gacaaacttc gcacattttt ccatgtgaat gacaatacaa      1140
     actttatctc tgatccaaat caccctaatt acaataaatt gtacaaaatt caaccattcc      1200
     tagatggaat aaataaagtt ttaattattt tcattcttgc taactggtgc ccaatgatgc      1260
     catatggaat cattttccaa aaaatgttca aaacattcaa aatggaaaaa aatatttgat      1320
     ttgttcattt taagcattat ttattgcagt gaaaaaagtt ttttttctct ctctctctgt      1380
     ataataattc ggtccggaaa gggttaa                                          1407
//
ID   piggyBac-N3_LMi repbase;    DNA;    INV; 2010 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N3_LMi.
XX
NM   piggyBac-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2010
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3356-3356 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2010 BP; 598 A; 407 C; 403 G; 602 T; 0 other;
     cactagaagt accacgtggg tcatttttga cccatatggg tgtttcgaga gccctacccg        60
     ccaccatatt catcgtagga ccaaaccctc tcgtgacttt taatcattta tagagttgta       120
     taactcacca aaatttcatc cctctaggcc acctagaagt atgaaaaatt tatctgttat       180
     accagtagta ccatgtgggt catttttgac ccatacacag tttaacacaa tctgatatca       240
     gcaacgccag tttttagacg ggaaataatt tctgggcgtg tctcgacgtt attcacgaga       300
     tgttggagta tgttatgaca ctttaggcca aaaataacga gaaatacgaa aaatttggag       360
     gtcgggtgaa gccttatatc agtgcggctt tcggttttct gtggactggc gccatgcaga       420
     cctatgaagt ggcagtggga agtcacagaa taaccacacc tctgtctgag ggactgctaa       480
     tagttctgtg acatgacagc agatgtcagg cgcgtcgtcc ttacagaagt ttcctgtctg       540
     tgtatctttg cctttggtca agccgagtgg gctcagtcat tccgggtggc agcgacgtga       600
     gcttgtggtt tattgtggcg agtttgcgtc attgaagcta cgatcgcaag gcgatgcggt       660
     ctcacgaatg ccgagattct ctaccatcga cgtttcaccg acgaaataaa gtgacgaatc       720
     cggtagtgag acgattgcag aggacgacga cgattttgtt ccagtggaaa ctgctgactc       780
     aagtgattca gatgtatcaa atgatcggca aacagaatct gaaacatctg acagtgattt       840
     acctcttgca caacgtaaac atgtaccatt ctacctaagt ttttgaacta gtaagcacgc       900
     agtccactgt acgtctttct ttgttctatt cttcaggtgt cggatttatg ggtgtcctta       960
     ttctgagtaa catgcatgct ggatgtcagg tcaatggcaa tactgagaag aaacttccag      1020
     aaactgtgta gttttataat gaaaccaagg gtggaattgg tatagttgac caaatggcaa      1080
     gacattacag tgtccaagct ggcacccacc gatggcctgt gcatgtcttt tacaacattc      1140
     ttgaccttgc aatgatcaat gctcacacaa tttttaagtt atgtacatgt aaggagactt      1200
     cacggcgaga attcattctc agagtagcag atgagcttcc tccccccccc cccataaaac      1260
     tgcagagagg agccaatctc cccttgcaag catttggcac cggaaatggc taatatggaa      1320
     atagaaggca ttgtcaaaat catgtttcct ataaacaaca acaggggaat gaaacatcaa      1380
     acttatgttt caactccaac aagtatgtgt gcaaaagctg ccaagccaaa actcttgtcc      1440
     aatgtctgaa ctgtgagtcc accccagctt agaaaatact gtcaactatt tgttcctaaa      1500
     tatttccaaa cacttacaat tatagactga aattgtttgt tcttatattt ttgtcccttg      1560
     attgcaataa gcaagaaaac atgttgcatt ttagactctt ttgcaaatac tcggtactta      1620
     ccttatatgt cagtaaaggt aaaaatacta ttactggtca cataaattgt atgttttgac      1680
     cctgtttcaa tctttctata aagataaaca ttgtaaaatt gttttgctta cttgtttgaa      1740
     tgatgtttga tagaagactg tagaatttct tctgtaaaac gtaaaatgaa aataacattt      1800
     atttctgaaa atttactttt gactgtgtac tattcatttt agagaacaaa taatattttt      1860
     cttgtacatt agagtcttct tgaatgtaat gtcaacatgt agaaacccaa aacaccaccc      1920
     aaatatcaat aaaatggtag tttcctagtg tgatcaaaaa tgacccacat ggtactacta      1980
     ggggtacaga aaaatccggt acttctagtg                                       2010
//
ID   piggyBac-N3_RPr repbase;    DNA;    INV; 654 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-654
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3388-3388 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 654 BP; 187 A; 123 C; 137 G; 207 T; 0 other;
     ttaaccagtt aagcgcgttt gacgtgtata cacgtcaaac caaatctctg ttacggtgcg        60
     ttcgacgtgt atactcgttg tgaaaaatat aaaattgcca ttaactataa aaactcgaaa       120
     ttttaataaa atacaataag aatattattt ggtgggatgt ttcctttatc ttaccaatag       180
     aactgccaag tattttatac ggaggggggt ggtgggagcc agccaaatga taagtggttg       240
     gtacatgttt ggtctccgca ttagagattg gggaattacg cacacaaata gaagctctca       300
     acccttgtgc aatgccgttt ttaccttaga tagaggttca gacctcagta cgagcatgat       360
     ttcattttgc acagaattca aagctctttt cttccttgta aaagctcttg cgtccctagt       420
     taactagagc aatgcatacg tgaagcggtg caagattttg aatgagcaca gaatgctctg       480
     gtaatctcaa gccccagaga ttgcagaaaa agtcgcttgc agtgactatt acgactgttg       540
     taaacttttg gttgttttgc cctgcgttcg acgtgtatac acgtcattgt ctgattttaa       600
     ttccgcacac tgtgggtgtt tttttaaaac taaattccac gcttaactgg ttaa             654
//
ID   piggyBac-N4_LMi repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   28-APR-2014 (Rel. 19.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from the migratory locust.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N4_LMi.
XX
NM   piggyBac-N4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1298
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3357-3357 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1298 BP; 413 A; 257 C; 259 G; 369 T; 0 other;
     ccctggagtg ggcgcgtggg gtacccctgt cacccagcgg atttacattg caattatttc        60
     cgttacggtt acagttgcag cgttcccgcg ctcagtacct ttcaaacagg ttcattgttg       120
     aagattcgtt ttgatttaac ctcagttgcg cagctaaact tgtagcagca ggacgtcgaa       180
     ttgagctggg gtacaactgt ccaccacgcg cctaaccacg taacatttct taaggtaggc       240
     attctccttt tttttaaata ctgatttcat actaaatgca ttgaaagtac aatatttgaa       300
     ttatttttat taatctggca tataactacg ttaactgatg tcagtgggac tcaccgaaac       360
     attacaggtg acaattggtt cagcagtata ccattagcta agatgctact gcaagacaag       420
     gactgacata cgttggaaca ctcagaaaaa acaagaagga gatccccaag gaattcttac       480
     ctaataaaca aagacatcaa tattattcta tttttggctt ccaggagaat tgcaccctag       540
     tttcatactg ccctaaagtg aaccaagctg tcctcttgat atctacatta catcatgata       600
     attccattga taaggattca agagagtcac tgaaaccaga aattgtaact ttttacaata       660
     tgacaaagat tggagttgat ttacttgatc aactaattaa aaaaaatgat gtttcccgaa       720
     acactcgtag gtggcctatg gttgttttct ataatttact gaatgtctct gccatgaacg       780
     cactgtgcat ataccgagaa aactgtagaa caccaaaacc agtgaaaaga acggaatttc       840
     tgcagaggtt ggcctgggaa atgacgaaac cgcaaattca gtaccgatct gctatacctc       900
     aaattcccat cgaattacgg cggcgtgcac gtgctctact gtgcataaat tcagaaatta       960
     cacctcaaga caatcccaga gaaggttcca agggacggtg ttatgagtgt ggaaggcaaa      1020
     aaaataagtc aaccagaaaa tggtgtcata agtgtaaaag gtggatgtgt ttggctcatt      1080
     tgtatactgt atgtgtaaac tgtgtctgaa ataaataatt gaaattttgt ttagaaaatg      1140
     agtgttttat ttccatcctc atactcgtac aaaggcagga aaacattaaa aacttaattt      1200
     gataatttct tcgatgcgta tttaaaaaaa tgaaatgggg tacaggagta ccccgcgcgc      1260
     ctaaccgtgt tacagtaatc cacgcgccta ctgcaggg                              1298
//
ID   piggyBac-N4_RPr repbase;    DNA;    INV; 1107 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1107
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3389-3389 (2015).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 1107 BP; 397 A; 164 C; 181 G; 365 T; 0 other;
     ccctatagtg catcgtgttg catatctgct acataatctt tagctttgtg ccggagaact        60
     ctcttggatt tcatttgaat taaaatatga tgaatatatg ccacaacatg tctagtgtca       120
     gtttatataa ggtttatgtc ggttctagaa ggtaatgagc taatataaag ccaaaagtga       180
     aaaaaagtca acacgaccgt agactgtggt aaagaccgcg cagaaattac cgttcttgtg       240
     cctattttat tgaaaattaa catttttaaa aattttactg tgcttgggaa agttagtatt       300
     tatctattat tactttataa atttgataac aatttttgct tagaccaaaa attgaaaata       360
     atttgtgttg catatatgca acatcatgtt atgagataat atgtcttcta actttgtaca       420
     ctgatgtctg ataatatcaa ttccgtaatt ttgcttgaag ttagtactat attagtacat       480
     cttctgtcca caatttatag catagaaccg aaagataaaa ttagacgatt tgacaggcta       540
     agcaaggaag ttgattgccc gaacgcaatg tatgtcgcaa aaagagtaca gaaaggaact       600
     tggtgagacc ttgtgtaaaa taggcagatc catggcgcct aaaagaggaa ggccatctcc       660
     ttcactggac gatactttga ggagaaaaaa atctgcatca gcgagaccac cagctagcgt       720
     cagaaaagat ggattagatc attggccctt atgggatgtg aaacgaaata tatgtaaatt       780
     aattggttgc acgggttatt cttatgcaaa gtgcaagaaa tgcaatttaa atttttgttt       840
     caacaaagac aaaaactgtt tttataatta tcataaccaa taaacttttt ttcccataaa       900
     ttttacattt gataatccca tcctcatttt acaacaaaat caatttttta acatgatgtt       960
     gcatatatga tacataacat aaatttcact ttcctgaaaa ttacaagcga ctaatatttt      1020
     ttaaaatatt ttttcgttgt tttatatcaa aatataatat taaaaaaaat aaatttgaaa      1080
     gaaataaaaa aatcatgcat tagaggg                                          1107
//
ID   piggyBac-N5_LMi repbase;    DNA;    INV; 951 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.12, Created)
DT   27-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-951
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3358-3358 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 951 BP; 315 A; 155 C; 169 G; 312 T; 0 other;
     ccctcgcacc gcacactggg gtcctaggga ccccagcgta atttgtgttg tgtattacag        60
     agagtacgtt ggctaaaagt ttttgaaact tggtgtatat taggtttgta acactgccta       120
     cacgtacgtg atgtcaactc aaacatccgc attgttgttg cactactgtc aagctgtaaa       180
     gattgctgaa cgcccgtggg gtcttgatta ccccagtgtg cattccgtgt agctcattta       240
     tggttcacta tatccgagaa aaagggacac aaaaaccaaa atgtgttgcc aggattgtaa       300
     aagggcgatc tgtgatgaac atagagccat aatttgtacc gagtgtgctc actgacaatg       360
     taagtggtga ctgatatatt agttacagtt tttgacttca ttctaatata cattatttcc       420
     atctttctta tatgtttttg cacaaatatg ctgcaatagt aattttgtaa acatcctatg       480
     ccaaaatata ctgtaaatat caaataagcc attatattat attacaatat attactttgt       540
     acattgaagt tcagactcag gttgaattta tacattatgt tgaagtgtaa catgtatcaa       600
     atttgtaaat accatatgtt actcactgta ataactaaat aaagtcatta agatattctg       660
     ttgcattata tactttcaaa tataagaagg ctaaacatat agaaatacaa aacattttta       720
     ttaataatac tatgcacatt ttataaatat cattcgtgac tcatagttgt aataataaaa       780
     aaatcactac aggtaactaa atagttattt acaatgttcc agatacataa gacattccaa       840
     tgtatatatt aatgagcttg gaacacttga tatatgataa aatttttctg gggtccagta       900
     gaccccagtg tgcagtggaa ggtaattgaa aacaagtgtg cggtgcgagg g                951
//
ID   piggyBac-N5_RPr repbase;    DNA;    INV; 1643 BP.
XX
AC   .
XX
DT   13-AUG-2012 (Rel. 20.10, Created)
DT   13-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   piggyBac DNA transposons: consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1643
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3390-3390 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 1643 BP; 580 A; 260 C; 267 G; 536 T; 0 other;
     cactagattg cccaaagaag tcattttgac tgctttttaa tttcagttta aaaaaaaatt        60
     atatttgaaa tgataaaatt tcttagaatt ttctgacttt ttatagatga tataaatgca       120
     tttattaaaa gttgcattta cctcccccct ctctttattt ctgatatatg ttgtgttata       180
     cctagattgc ccaaaagcag tcattttgac tgcttaggaa atttgacata attaaattac       240
     ttttattatt gaattcagta aatttctcat atgaccagtc cggccctgta ttgaaataat       300
     atttttcatt ttttcaatac ccgttacatg ataacataga ggtacatgat aaattgtaga       360
     tttcaacgtg cactacataa gttgcagttg ctctgtaagc caaaagtagt tgttattctt       420
     atctctatgc agtgattttt gttctaccaa ggtatctaca attgtttatg ttatatcatt       480
     tgcgccctaa attcataaaa gaaaagtcga ataaaagtga tttatttatg aaaaaactaa       540
     cgaacatagg tgaattctgg tctctctaga agagtgctcc gatacagaat caaatgcaat       600
     aagttctgaa ctatcatctg aagatgaaac ggtttacatt caaagtgaag catctgaaac       660
     tgaagatggc gatgaagaat cgaccactaa tgatgaaaat gaaaatgtca tcaatatgcc       720
     cagtaaaagg tgtagcatgc gaattatttc agacactgat gaagaaactg aaaacacctt       780
     tcaggagatc gaaagagctg ctgattacca tctgatactg ttgtctgctg atactgtgtg       840
     gtccaaattt gaagaaggag gtattcctga aagattacca tctacttgta ttttcaagga       900
     tgtgtaaggg ccaacaagct actcaaaaag aaatattatg gcagataata tattatcagt       960
     gcattttcgt agatagtaga taaccatatt atgaagcata taagaatgtg cacagaagaa      1020
     gaaggtcacc gaatttcgat gcatgattgg accacatcat taccggaaat gcgtgtattt      1080
     attgggattt tttatgctcg tggagcttac ggggcaaaac attggatcct ttacaaagta      1140
     aatacaaata ccacgaaaag tgttcttgtt ccaattggca gaacagcttt ccactgtata      1200
     tagaaatgca tggcaaaaaa ttttaccaga acctgaggac ccacaaaggc cagctgcaac      1260
     atcatcaact gcaatccacc ctaacaatcg cagaatttgt caaatatgac tttgccacag      1320
     taaagaaaca aataatattt gtgaaaaatg taaaaagtat gtttgcgtaa aatgtacgca      1380
     agaaaaaatg tccactttta tttgcaaaaa atgcacaact aaaaatgcat aaaatacttt      1440
     tctttttttt cccaattgaa gtaaattttt gttattgttt aatatttact aaaaacatgt      1500
     tatataactg taaataatat aaaagaatat ttaaaatcaa ttttaaataa atttctttgc      1560
     gccatagtta ttctttcaca aagaagtcat tttgactgct tttgggcaat ataggtatat      1620
     actaagttcc agtctttcta gtg                                              1643
//
ID   piggyBac-N6_LMi repbase;    DNA;    INV; 950 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 19.12, Created)
DT   28-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-950
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3359-3359 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 950 BP; 303 A; 191 C; 177 G; 278 T; 1 other;
     cctttaacta acgtggtggc aaacatggga cactaacacc gtggtgcggt caatctgacc        60
     tctcactttt taggtgggtg taatgttaac aatttgaaca cctttgaaat tctctgtttt       120
     gcatatgaaa gagtctttaa tactaagtaa ataaacatga aaatacaata caataacatt       180
     aaataattat tgttaaactg gcactcagat atgtttactg cacatttcgt acactaatac       240
     atttatatgt tttccattag ctaataatga caataaagct ttgatagatt ttgtatattt       300
     tcttgaagaa ctaatgaaac aaaaatgtaa cgtttttaac tcgaagaaat acctcttgaa       360
     aaatcagagc cgtccaaatc acaagttttc acaaccgtcc ttgcagacct gataatatgt       420
     cgttagtcgt aactcctgcg gaagtcgtgg gttctgagct cgcttttgca tatgtttcag       480
     cacaagacta cgggccagct ctttcagaag gatacctctg tcgacaggag cttcatctga       540
     tccaatcttc tgaagaacat atgcatttct caccttttct tcaaagtttc ggtctgaagt       600
     gttcacacat tgtctgctac ttgcagcaga tcctttacct gtaaaattac tcggttcctc       660
     catgtttcaa aagctttgaa atggaaaata tcgagaatat gtgaggaaag taatagcaga       720
     aaaaattaca caaacaacgt agtgcggtca aaatgaccgc sagctatttt cgaaaggacg       780
     tcactcatgt tatagaagct ctggcataac atcatacgct ttgccggtcc actcacaact       840
     aaactcgaag ctaacgagca gatgggcgca ataatgggta gggaaattgc taaatcgcaa       900
     ttgttgccga aagcgcgcgg tcagatagac cgcaccacgt tagttaaagg                  950
//
ID   piggyBac-N7_LMi repbase;    DNA;    INV; 1383 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 19.12, Created)
DT   24-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1383
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3220-3220 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1383 BP; 500 A; 252 C; 206 G; 425 T; 0 other;
     ttaacccttt atagggcaaa actttatttt taaaacagag aattgaaatg tagttagtta        60
     aattacttat cgtacccaaa cacataaaaa atatttgaga tttgaaaatt cttttattat       120
     taattagtat aaatttttat acttggcaaa atattgacca caatccattc tgtggaacag       180
     ttacttttgt ggtcgataat ttaaccactt catgaaaatg aggtatttta tgacaatagc       240
     agtaaataag aagaaataaa atctttattt gtcgtttcct ttcttttatt ttgcatacat       300
     acataaaaat acatacaaaa tatacataga tgtgtcaaag cattgtctgc acaaagttac       360
     actgcaagtg atacaagata actataaaaa tacatacaaa agagtcatac ataaaatcac       420
     agatcacatt tgttcagttc tttagttctg ctggtggaag ggtccaaagc attgcctaca       480
     caaagctaca ttgcaggtag tgcatgccaa cttactacgc ttaggtttgc ttcgtgtact       540
     gcaaaatgca cacctcctta tgacctaatt tgtaaaaaaa atattgcttt cattatgaaa       600
     ctgcaattac tgtacaagta agaggcagct tatttgaatc tacattatgc tatagtatca       660
     taataaatcg atttaatttt gtaagtgtaa agacttacca acaaaattag acgtaatcac       720
     tgcacagaaa actagtactt ctgcttcccg tgctatatac agctcactgc tcacaaatcg       780
     ttcaccttcc ttactaacgt gagatgcagc ttcttcagaa cagcatataa catctaagcg       840
     aaatactaaa tttcagaaac tgtttgataa aattgtcaag taaatactca gataacagaa       900
     taacataata taacctgtcc agaagtattt gtttagaagc gaaatattac gtaaactcga       960
     gaaaaattga ggttatctac ctctcctggc atccacgaaa caaaaacgat catttcagta      1020
     ggatttgcac tagacatggt acttctggag gcaaattact ctcaccatat ctatattaca      1080
     acataaaatc ataataaatc gacttcattt tgaaaatgta aagacttacc agcaaaatta      1140
     cgacataagc cattcatcga aaacttacgc cgctttgtgg ttactttatc aaccacaaac      1200
     aataacaagt gctgccatct gttgataaaa caatgtaagc tcgttgtggt cgctttctta      1260
     gccaaagatc atccccgcgc agtagctgaa tgcgataggg tctatgacag gcatcagtta      1320
     gcagagattt tgaaccttat atcgtgtggt taaaatatcg accacaaacc tataaagggt      1380
     taa                                                                    1383
//
ID   piggyBac-N8_LMi repbase;    DNA;    INV; 1210 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 19.12, Created)
DT   25-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1210
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3221-3221 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1210 BP; 381 A; 232 C; 225 G; 372 T; 0 other;
     ccctcgggcg gcagcgccaa ttattataac ttcagcagca gcgcggtgca gatttgctac        60
     cactgtgtat tccgagttac aaacctagta tatagctact aagtgatcgt aatgacaaaa       120
     atagtttaat gtacaggtag aaatatcaca tttgttaata tctgaattag tatatcaatt       180
     accttcggtg tataaatata acaaatgtaa cattattccg aaagtggaca ataatcatgt       240
     ataatagacc cagcagtact atcatttcct ctttcgttac ttccctgtag ttcctgtctc       300
     ttgagtaatt agtgtcagct tttttctgtg ttatgtggaa cttagtacac ataattacct       360
     catcaatcat attatcatct atcatgaatg agagagcttg cgtctctgac ctcacgcccc       420
     ttgcgttccc ttttgaacca gggaagattt ttatgatatt ctttttcagt gttttggagt       480
     gctgcttgta tggcgtttta ctccacagag tggtaccgtc ttcagtatca gattcattgc       540
     gtctgaaatc ttgttcggga tcggaactag gatttacatt tgaataatag tatcctgttc       600
     atgatctgat gaggaatcta gacaaaaatc actaagatct tcattacttg tcgaaagaag       660
     tctatttcct catctgttag acccatacca cgtctacgag acctgaagat taaattatgt       720
     agtagaataa cactcatttt cgcattgtgt aaggcttaaa aagggttaaa aatgagattg       780
     acggaaactg cagcatggct aatcaggaga aactagagga caatttatcg agagttaaac       840
     ttctatttac gaaataaatt taaatttttg agcattctaa tatgtagggt aaaatttata       900
     caataaatat ttactagaaa ctgccacaaa tccatttgca aggaaaacta gacgtaacac       960
     aaaacaattc aaatctactt acatgacagg cagcgcggtg caaatctgct accagtgatg      1020
     cactccctaa caaaactttt tttgggtgga cacagccgtg cactagaaac tcagaacctt      1080
     cactgacatc attgttaagg cttaattgag gaatagctaa agcggaaata cggcatctcc      1140
     attattgcga caacagtgag catttaaaga aaagtggtag catatttgca ccagcgctgc      1200
     cgctcgaggg                                                             1210
//
ID   piggyBac-N9_LMi repbase;    DNA;    INV; 962 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon from the migratory locust, consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBac-N9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-962
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3222-3222 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 962 BP; 308 A; 167 C; 228 G; 259 T; 0 other;
     cacattcgtg acggcgcccg agtctgactc gggctgcatg gtattgccga gcggcctgag        60
     cccgagttag actcgggcgg ctgtgatttt tatgaggcga gaacatttac tttgcttgaa       120
     gtggaaagat acaagggatg tgttgatgct ttcaacgtgt cacaaggcca caatgtcgga       180
     agtgtcggtt cgtactaaac aggggcgcat caacaagatg aaaccagttg cagtattgga       240
     ctacaacact tacaaaacag gagtggatcg ttctgatcaa atggtggctt actatccatt       300
     tggcaggaag cagttcaaat ggtggaaaaa attgtttttc cacatgtttg taatgtgtct       360
     cacaaatgcg tatgtattat acaaggagac aagaagtgct gaagacagaa aaaaatgtag       420
     tctgaagata tttcttcttc acgttggaga gtctcttgtc aaaagagcac acaaggaaac       480
     tgagcctgtg gctaatctaa caaacgacag actcaaagga agacattttg tgcagaagat       540
     accagcgacg gagaaaaaag caaaccccac gcgggtttgt aaagtttgtt cagatagaag       600
     caaagcagag actgggaagt caggaaggaa tttcctggtg gtgtcaggag tgtaatgtcg       660
     ctttatgtat gccagaatgt tttagggatt atcacacaaa aacaaattgt gtcttaaatt       720
     gaatgtaaga ctttttttaa aaatctgaaa atacatagca atattttttt gcataaaaat       780
     gtgtttcctt ctttctcctg tcaaaaccta cttatttaaa aagaggatac attgagctgc       840
     aaaaatataa aaatttctta gctgtagcat tacagcttaa acagttactg atttctaaaa       900
     atcatgaaaa atgctcagtt agttgggcac ccggggcagc actgggctca ggtgcgaaag       960
     tg                                                                      962
//
ID   piggyBac1_AG repbase;    DNA;    INV; 3338 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   piggyBac1_AG is an autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac1_AG;
KW   piggyBacN1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3338
RA   Kapitonov V.V. and Jurka J.;
RT   "piggyBac1_AG: a family of autonomous piggyBac-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 65-65 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are 5 copies of piggyBacN9_AG in the genome,
CC   they are ~98% identical to the consensus sequence.
CC   This family is characterized by the TTAA target site
CC   duplications,
CC   and by the 17-bp terminal inverted repeats (1 mismatch).
CC   The genome harbors several families of piggyBac-like elements.
CC   An ancestral form of piggyBac1_AG was directly related to
CC   the piggyBacN1_AG nonautonomous family.
CC   piggyBac1_AG encodes the 552-aa piggyBac1_AGp transposase
CC   (positions 1165-2820).
XX
FH   Key           Location/Qualifiers
FT   CDS           1165..2820
FT                 /product="piggyBac1_AGp"
FT                 /translation="MLKKYNYQSIILSKLIVMTITQNLSNFQAQHITHDGT
FT                 IWSSQPTIRRKILAHNILRSSQSGPTRKTEGLSIIKTFKLLMSDEMIDIIV
FT                 RETNRKAQQIYEREQVTNSAKSASMHTWKTLTTSEFEAYLGILLLAGVMRS
FT                 NYVHSTELWKTSSHPIFRATMSLQRFRSINRFIRFDDGRTREVRKEMDKSA
FT                 AISDIFAMLNRNLQACYVAGSHVTVDEQLYPYRGGTGFTQYIPSKPAKYGI
FT                 KVWWVCDAVTSYPIKGQIYTGLAPSGQRERHQGERVVKDLCRIFRGSGRSV
FT                 ICDIFFTSYNLASSLMSDFKLALLGTVNKRRTFVPPMFANPHGREIQSTLY
FT                 GFSENISICSYIPKKNKSVVMLSTMHYDKDVQGPKEKPAMIIDYNKFKGGV
FT                 DNMDKCLSEYSTKRKTNRWPLAFFFNILDIAAFAAFKIYKENNLQNCQSTD
FT                 YRRMFLQQLSEQLTMPEIQRRSENVQIMRHFGPRSGVESMLGGPLIALSKK
FT                 NTTNDVEERDVSGRIKHKGNCYLCVKKRSTRKSCSTCKKPICTLHSVIKTS
FT                 CKSCD"
XX
SQ   Sequence 3338 BP; 1162 A; 564 C; 593 G; 962 T; 57 other;
     ccgtcatgtg tacgaccgcc tacccgggta agttttgcat ctttatttca aaatatcttt        60
     gaattgagaa gtcgtatcaa ctccaaattt ttaaaatgcc tcagaaaaga tgttttctaa       120
     ccatgtttaa aaaataaaaa atttcaaaaa tatttgaatt tattttttat tatttaactt       180
     tatataccct tcacatgtac aaccgcctac ccgggtaggc catacatttt gtatggaagg       240
     atgatgtttt tcttggttat aagggtatat attttgagtt acttgtaaga tcagaaagaa       300
     aaccgtctca taggttcata ataatgttta ctaacatatc gwagtaaaat tagaatttta       360
     aaaatcctrt maatattttt ttcaatcaaa aatatgttgt aactccaaca ccccaaccgg       420
     ccttgccrca agtttkgagt agatgcttcg aatttttatt gcttgttgtg taacaatata       480
     ttgaaaataa cacaaaaatc attttmaaat gatawmaacy astastrayw wacgaaatak       540
     aatwckmtgg ctgaaaktty acacacacat tcatattttt rttatagtgt twctgcgraa       600
     acactctctg gcctacgcta gttttctgmc gtgtctctct gcrtctgcct gcacmagcaa       660
     attgcgtatt tttggctcat ttcggtagta ggyarrkwar kygaacaatg aaaaaccaag       720
     attctcggaa aatattgaac acaatcacaa tcagacaaga cttcacgaga cggcacgtgc       780
     agctcgatcg cacaaagaat attgttcact tcatgttcaa aaacgaatcg agaaggttgt       840
     gttagtacag tgatcaagag attggttgaa taatttgcgt taacaatctt tcgaaagaag       900
     tgagtagtgg aaaaatatag tgaatgtatt gttgagatcg aaatcgtttt ttatcacatt       960
     ttttactgtt tactctagaa atggaggaaa ttgaatggct aactccagag gaactttcaa      1020
     atcttactga agaagaaaga acagcttata ctcaacaaaa aatacatgaa tttatggaat      1080
     acggtagcga agatgaaaat atgatttctg cagtagtaga agaagatgaa attcctgtat      1140
     ttgatcaagt gatcatcgat tctgatgctg aagaagtaca actaccagag tataatcctc      1200
     tcgaaactga tagtgatgac gattacgcag aatctttcca actttcaagc gcaacatata      1260
     acacacgatg gaactatttg gtcaagtcaa ccaaccatac gccgtaaaat attagcccac      1320
     aatattttac ggtcttcaca gtcaggtcca acgcgcaaaa cggaaggact tagcataata      1380
     aagaccttca agctgttgat gtctgacgaa atgattgata tcattgttcg ggaaacaaat      1440
     aggaaagcgc aacaaattta tgaacgcgag caagtcacaa actcagcgaa atcagcaagc      1500
     atgcatacat ggaaaacatt aaccacatca gaattcgaag catatcttgg gattttatta      1560
     ctagccggag ttatgcgttc taattacgta cactctacgg aactatggaa aacatcttca      1620
     catccaatat ttcgtgcaac aatgagtctc caacgatttc ggtcgatcaa tcgtttcatt      1680
     cgctttgacg acggacgaac gagagaagtt cgaaaggaaa tggacaaatc agcagcaata      1740
     tcggatatat ttgcaatgtt gaatagaaat ttacaagcat gctatgttgc aggttcgcat      1800
     gtaaccgttg atgaacagtt atatccttat cgtggtggca caggatttac ccagtatata      1860
     ccatctaaac cagcgaagta tgggataaaa gtgtggtggg tatgtgacgc agtcacatca      1920
     taccccatca aaggccaaat atatacaggg ttagcaccat ctggacaaag ggaaagacac      1980
     caaggtgagc gtgtagtaaa agatttatgt agaatatttc gcggaagtgg tcgtagcgta      2040
     atttgtgata tttttttcac aagttacaac ttggcctcat cattaatgtc agatttcaaa      2100
     ctagcacttt taggaacagt aaacaaacga cgaacgtttg ttccgccaat gtttgctaac      2160
     cctcacggta gggaaatcca atcgacatta tatggcttta gcgaaaacat ttccatttgt      2220
     tcctatattc ctaagaagaa caagtccgtt gttatgttgt caacaatgca ttatgacaaa      2280
     gatgtccaag gtccaaaaga aaaacctgca atgataattg attataataa attcaaggga      2340
     ggagtcgaca acatggacaa atgcctttct gaatattcta ccaagaggaa gacgaataga      2400
     tggcctttag catttttttt caacattttg gacatagctg catttgctgc tttcaaaata      2460
     tataaggaaa ataatttgca aaactgccaa tctacggatt atagacgcat gtttttgcaa      2520
     caattgtccg aacaactaac gatgcccgag attcagagac gttcggaaaa tgtgcaaata      2580
     atgcgacact ttggaccacg cagcggagtg gaaagcatgt taggaggacc attgatagca      2640
     ttatctaaaa aaaatactac taacgatgta gaagaacgtg atgtgtccgg acgaatcaaa      2700
     cacaaaggca attgctatct atgtgtaaaa aaacgatcaa cgagaaaatc gtgttctact      2760
     tgtaaaaagc caatttgtac gctgcacagt gttattaaaa ctagttgtaa atcgtgtgat      2820
     taaaaagatg racttttatg taaaaggaat tatattggca tttgttyrrm awyaaaaact      2880
     tgaaataaay atatgaaaat taaaaaaaaa acataataar catatcttat agatcgtcaa      2940
     catatakttt tatacaacaa ggaaaacaac caaaagatgt atactttttg aaawtttawg      3000
     atttagattt aacttttgaa agraacgtaa rtamaactta gaaaaagaca taaacatcca      3060
     ctcaaacttg mggcaaggcc ggttrgggtt ttggagttac aacatatttt tgattgaaaa      3120
     atwtwttgat aggattttta aaattctawt tttwctacgm tatgtttagt aaacattatt      3180
     ataaacctat gagacagttt tcattcaaat ttaacaaata actcaaaaga tatacgcttt      3240
     taaccacgaa aaacatcatt cctccacaca aaatgtatgg cctacccagg taggcggttg      3300
     tacggttacg tagagttttt tggtcgtaca caagacgg                              3338
//
ID   piggyBacN1_AG repbase;    DNA;    INV; 1661 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   piggyBacN1_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; piggyBac superfamily;
KW   piggyBacN1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1661
RA   Kapitonov V.V. and Jurka J.;
RT   "piggyBacN1_AG: a family of nonautonomous piggyBac-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(3), 66-66 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~20 copies of piggyBacN9_AG in the genome,
CC   they are ~94% identical to the consensus sequence.
CC   piggyBacN1_AG copies are flanked by the TTAA target site
CC   duplications.
CC   The consensus sequence has 17-bp terminal inverted repeats
CC   (2 mismatches). The internal portion form an imperfect palindrome
CC   (pos. 200-1626). It main part (pos. 625-1251) was formed from
CC   a MARINERN12_AG-like element.
CC   Classification: a nonautonomous piggyBac-like DNA transposon.
CC   The genome harbors several subfamilies of piggyBacN9_AG.
CC   This family was derived from to the piggyBac1_AG-like autonomous
CC   transposon.
XX
SQ   Sequence 1661 BP; 505 A; 319 C; 331 G; 506 T; 0 other;
     ccgtcatgtg tacaaccgcc tacccgggta agtttcgcat ctttattcca aaataacttt        60
     ggattaaaaa atcgtatcga cttcaaattt taaaaatgcc tcagaaaaga tgttttctac       120
     ccatgtgcaa aaaataaaaa atatcaaaaa tgtttaaata ttttttttta aattatttaa       180
     gtttatatac ccttcacatg tacaaccgcc tacccgggta ggccatacat tttgtatgga       240
     agaattatgt ttttcgtggt taaaagcgta tatcttttga attacttgtt agatttgaat       300
     gaaaattgtc ttataggatc acaataatgt tttataacat atcgttgtaa aattagaatt       360
     ttaaaactcc tatcaatatt tttttcaatc aaaaatgtgc tgtaactcca acaccccaac       420
     cggccttgcc gcatgttttg agaggatgct tatgtctttt tcttttcttt caaatgttgt       480
     attacagttg tgtacagtta aattttattg cttgttgtgt aacaatatat tgaaattaac       540
     actgaaatca cctcttttaa aatgatacca accactacaa gcaaacgaaa tagaattggc       600
     tgaaagttaa cacacacatt catacttttg tcatagtgtt actgccgaat agggatgggt       660
     gttttggagc gcaccaatgg ctccgaagtc ggctctgcac ccacggctcc agagccggat       720
     ccacaccaac agctccggag ccggatccgc accaacagct ccggagccgg ctccgcacca       780
     acagccccgg agccggcgac gaatcaatgg ctccggagcc ggcggtgaat caacggctcc       840
     ggaccaacgg ctctggacta acgtttcaat agagacggca ttgtatgata gcctaaaaaa       900
     cgaatctatc ttctcgcaag tgtagaagct aacacccgat gtgattgtgt gattgttgaa       960
     caatgttcaa aacttatcga ttttttttat agattccttt acaacattat ttactcagct      1020
     atttatggat cttcccgatt gaaactttat tgaaaaggat ttttttgtgc aatctgttaa      1080
     aaccggctcc ggagccgtga gtgcggagtc gttggtgcgg agccggttcc ggagccgctg      1140
     gagcggagtc agctttggag ccgtgggtgc ggagccgtgg gtgcggagcc ggctccgttg      1200
     ggttggagtg gaggaggttc cgaagttgtc tggagccggt cggagccggt ttttaataaa      1260
     acatgatgag catattttat agatcgtcaa catatatttt tatacaacaa gcaaaacaat      1320
     tgaaaaatgt atataacttt tgaaagaaac gtaagtaaaa cttagaaaaa gactaatcat      1380
     ccacttaaaa catgcggcct ggccagttat ggtggtggag ttagaacata tttttgattg      1440
     aaaaaaatct tgataggatt tttaaaattc taattttact acgatatgtt ataaaacatt      1500
     attatgaacc tttaagacag ttttcattca aatcttacaa gtaattcaaa agatatacgc      1560
     ttttaaccac gaaaaacatc attgttccat acaaaatgta tggcctaccc gggtaggcgg      1620
     ttgtacgatt acgtaaagtt ttttggtcgt acacaagacg g                          1661
//
ID   piggyBacN2_AG repbase;    DNA;    INV; 1135 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 21.07, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   PiggyBac-like nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Transposable Element; Nonautonomous;
KW   piggyBacN2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1135
RA   Jurka J.;
RT   "DNA transposons from African malaria mosquito.";
RL   Repbase Reports 16(7), 1392-1392 (2016).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 1135 BP; 343 A; 185 C; 212 G; 395 T; 0 other;
     cactagaacc gccgatggga cttttttgtc ccatcgcact cgaaaaaggt gtgttattcc        60
     gcttgccgtc gtgacaaacc attgaaattt tctgactttt atttattttg aacgatcttt       120
     cgaatgcgct aataaaaata attgtatccc atatggttct ttaaaaaaat catttttatc       180
     ctagaaccgc catatgggac atttttgtcc cataggcaaa atacgtagtg gtggctggta       240
     tatctgctgt caacgagtga cggatgtgct tctgcaagtt tggcagcact gggtagaaag       300
     tatgcgtaga cagtactccg tgaaaagtgc tagtagaaga tggcctgttc attcattttt       360
     ttaatattct ggatttggcg ggaatcaatg attgggtttt gtgcaaagaa cttacaacag       420
     aaaagatatc tagacgcgat tttcttatca agctaggcaa agaactttca tgtttcatgt       480
     gagccaggtt ctgatgaaac aaagatgtgt tttagatgct tgaaataatt aatctaggtg       540
     ttccttttgt tttcgaaaaa aagccttgtc ctcttctttt gaccatttag agctgtgttg       600
     acatcgaatt tttgtaatgt ttctaaagcg agtcatagac gtttgcctat acccaaacaa       660
     ctttgaacat tagactgata agtagggttt ttatgataag gaaacaagtc taatgtttaa       720
     agttgtttgg gtacttgttt cattatcata aaaaccctac ttatcagttg attgtttaaa       780
     taatttatag ctataagcct agatttactg tcgttcaacc ctgtaagcaa taattatcta       840
     taatataatt atcataagga gtttatcact agaagctctg taatgttata ttattctaca       900
     gaaaactggc tttgatatat ttggtatgcg gttcatatga tcacaattcg attttatcat       960
     tgattgagtt actaatgaag cttcattata cctaattata atgtttatta attatctatc      1020
     cacaagaaac ccttaggtaa taataaacat gtccaaatat ttacacataa ctaatgggac      1080
     aaaattgtcc catctggcgg ttctagtgag gttgaaaagc ccggcggttc tagtg           1135
//
ID   PLACW_DM    repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila melanogaster P-element P{lacW} consensus.
XX
KW   P-element; PLACW_DM; P{lacW}; insertion sequence.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Burmester T., Mink M., Pal M., Laszloffy Z., Lepesant J.
RA   and Maroy P.;
RT   "Genetic and molecular analysis in the 70CD region of the third
RT   chromosome of Drosophila melanogaster.";
RL   Gene 246(1-2), 157-167 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Drosophila melanogaster P-element P{lacW} consensus.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 930 BP; 293 A; 152 C; 159 G; 326 T; 0 other;
     cttaaaagtg cgtttgaaca ttctcgttgt gggcgtgtgt gaatttagta cgctccttcc        60
     tggtttaaat cattttcgca ctaaacttct gctctcagcg gaatttactt ttgctttatt       120
     agagatggga gctcgcgcat cagctgagcc gatacttgcg caacaggtga gacagctgat       180
     tagagatggc ccttttcaac tgttcccagc agtgaccgct gccataaccg tttttcaaat       240
     ttacgtgaga acagacataa aataaatatt acagctcgta gtaaatgtta ttctatattt       300
     aaaaggaaat tgtaatagtt aaaacttgca atgaatcagt tacgttcaaa aaaggaaaca       360
     cactttagtt tttggctagt ttattgggtt aataatattt tatttaaaat agttcgagtg       420
     ttcaatatag tcatgtaaat gtgtacaaaa gatccggcat tttatattta atatatcgat       480
     ttcccttcac tttcgctcct cgtataccat gctggcgtct tatcaaatta aataacacaa       540
     tatttaaaaa ctaacaatgc agagcgtgct aatcgtgtat gtttgcatta aaacgttgcg       600
     aacttatctc ctcttgcgct ttttccttat ttttgcaaat taaacagaaa aagatattga       660
     aaggatatgt atgcataagg atgccgatgg cacttgtaaa tatttaaata caataaaact       720
     gtgcttatag ttcaactaaa ttcgttattg cattttttaa atatatatct aagtatctaa       780
     atatcgcgag aagacactat ccaaaagaga ttacaaaagc ttttcagttt aatttgcgtg       840
     taatgttctg ctgctttata gtaaactgct ttatatcagt cttcttcaat ttgttgttgt       900
     tcgtgagaat aaattggcat ataaatggaa                                        930
//
ID   POGO        repbase;    DNA;    INV; 2121 BP.
XX
AC   S90749; X59837;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   D.melanogaster DNA for transposable element pogoR11.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposon;
KW   pogo.
XX
NM   POGO.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2121
RA   O'Hare K.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (27-MAY-1991). K. O'Hare,
RL   Imperial College of Science, Technology & Medicine, Dept of
RL   Biochemistry, London SW7 3AZ, UK.
XX
RN   [2]
RP   1-2121
RA   Tudor M., Lobocka M., Goodell M., Pettitt J. and O'Hare K.;
RT   "The pogo transposable element family of Drosophila
RT   melanogaster.";
RL   Mol. Gen. Genet 232(1), 126-134 (1992).
XX
DR   GenBank; X59837; Positions       1    2121.
XX
FH   Key           Location/Qualifiers
FT   CDS           340..1455
FT                 /product="POGO_1p"
FT                 /translation="MGKTKRVVGLTLKEKLQIIELVTNKVDKKEICAKFKC
FT                 DRSTVNRILQKTNEIHEAVAASGLKRKRQRKGAHDLVEEALYIWFGQQESK
FT                 NVILDRHVILAKAKEFCQKFNDAFEPDASWLWRWRKRHNIKYGKIHGETAT
FT                 NDSVSANEYKNDILPGLLKGYNPEDIFNADETALFYKAMPNATFFTCGKQL
FT                 NGQKSQRVRLTLLFICNATGTYKKTFVIGRSKSPRCFKNANVPIPYYANKK
FT                 AWMTKDLWRKIMTGFDEEMKKQNRKILLFIDNATSHTTVKDFENIKLCFMP
FT                 PNATALLQPLDQGIIHSFKLEYRRILVKQQLIAVNCGKSTVEFLKSLSLLD
FT                 ALYFVNQGWKNVKMLTIQNCFKKVRWDYY"
XX
SQ   Sequence 2121 BP; 724 A; 353 C; 399 G; 645 T; 0 other;
     cagtataatt cgcttagctg catcgatagt tagctgcatc ggcaagatat ctgcattatt        60
     tttccatttt tttgtgtgaa tagaaaattt gtacgaaaat tcatacgttt gctgcatcgc       120
     agataacagc ctttttaact taagtgcatc atatcagctg ttttttttgc caatttcaat       180
     gaatatcatc aaagttagct gcgccatcta tgaatcattt ttgcatatct aaaagatgca       240
     agaatgccaa ctcgtttcag tatctgcgca tgtccgtttt tgtttttgct ttgatcgtga       300
     tttttgtgtt tttgtttctt atggcacaaa gttattaaaa tgggtaaaac aaagcgtgtc       360
     gttggactaa cactaaagga aaagcttcaa ataatcgagt tagtgaccaa caaagtggac       420
     aaaaaggaaa tttgtgccaa gttcaaatgc gacagatcca cagtcaaccg cattttacaa       480
     aaaacaaatg aaattcatga agctgtggcc gcgtcaggtt taaaaagaaa gcgtcaaaga       540
     aaaggagcgc acgacttagt agaagaagcc ttatacattt ggttcggaca gcaggaatca       600
     aagaacgtaa ttcttgaccg gcacgtcata ttagcaaaag cgaaagaatt ttgccaaaaa       660
     tttaacgacg cctttgaacc tgacgccagc tggctttggc gctggcgcaa gcgccacaat       720
     ataaagtatg gcaaaataca cggcgaaact gctacaaatg attccgtatc agcaaatgag       780
     tacaaaaatg atattttgcc aggattgctt aaaggttata acccagaaga catttttaac       840
     gctgacgaaa ctgcactctt ttataaagca atgccgaatg cgacattttt tacttgtgga       900
     aagcaattaa atggccagaa atctcagaga gtgagactta ctttgctgtt tatatgcaat       960
     gcaactggga catacaaaaa aacttttgta atcggcagat ctaaatcgcc acgatgcttc      1020
     aagaatgcta atgtgcccat tccgtactat gcaaataaga aggcctggat gactaaggat      1080
     ctctggcgaa aaataatgac aggatttgac gaagaaatga aaaagcaaaa tcgaaagatt      1140
     ttactcttca tcgacaatgc aactagtcac acgactgtca aggacttcga aaacataaaa      1200
     ttgtgcttca tgccaccaaa cgcaacggct ctacttcaac ctctggacca aggtattatc      1260
     cactcattca aattagagta taggcgtatt ttggtcaaac agcagctcat tgctgttaat      1320
     tgtggtaaat ctactgtgga atttttaaaa tcattatcgt tattggatgc tctatatttt      1380
     gtcaaccaag gatggaagaa tgttaaaatg ttaactattc agaattgttt taaaaaggta      1440
     agatgggatt attattgata tgtatctcaa ataacgaatt tattattttc aggctggatt      1500
     taagttcagt tttgaaaatg aagacaccat tgctgaaaaa gacaaacaat gcgtagaagt      1560
     tgacattgta tcgaatatta attggaatga atatgccaat gttgatgcag atgaggcttg      1620
     ccatggtcaa ttagatgatg atgaaatcgt gcgctcttta gttcaagatg caaaaaccag      1680
     cgataacgaa gaaagccata gtgatgaaga tgtggacgat actgagcgtc ctacttttaa      1740
     ggatgggttt gcagcaatta aggctttaaa gtccattttt atgcgaaaca ataatgatga      1800
     gtttttgcaa aacttgaatt ctatggaaga caagctgttt aatttacata taaactcagc      1860
     tgtattgcaa aaaaaaatta ctgactattt ttaagttagt tttaaaaagt gttttaatca      1920
     attcaccatc acttaaattt atatgtcgat cttacttatc attaagaatg aaattatcag      1980
     ttccttttat gtttaacatt gttataaaga aataaattct ttatttttcc ttaaaaaaaa      2040
     aaattaagtt agctgcattt ttaagttacc tgcatcgagg cattgtgcaa agtactcgag      2100
     gcagctaagc gaattatact g                                                2121
//
ID   POGON1      repbase;    DNA;    INV; 186 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   01-APR-2002 (Rel. 7.03, Last updated, Version 1)
XX
DE   POGON1 is a DNA transposon, a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Mariner/Tc1 clad; nonautonomous DNA transposon; pogo; POGON1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-186
RA   Kapitonov V.V. and Jurka J.;
RT   "POGON1, a "bona fide" family of nonautonomous DNA transposons.";
RL   Repbase Reports 2(3), 7-7 (2002).
XX
DR   [1] (Consensus)
XX
CC   POGON1 belongs to the Mariner/Tc1 clad of DNA transposons.
CC   There are ~25 copies of POGON1 in the euchromatin regions of
CC   the D. melanogaster genome, most of them are 100% identical to
CC   the consensus sequence and to each other. POGON1 elements have
CC   21-bp TIRs and the TA TSDs.
CC   POGON1 is a perfect example of nonautonomous DNA transposons,
CC   which
CC   are erroneously called by some researchers as MITEs. The 88-bp
CC   termini of POGON1 are identical to those in POGO, the autonomous
CC   DNA transposon. Presumably, an internal deletion in a POGO
CC   element
CC   formed an ancestor of POGON1. It's highly likely POGON1 elements
CC   are currently transposable. Clearly, molecules of the
CC   POGO-encoded
CC   transposase execute "cut and paste" transpositions of POGON1.
XX
SQ   Sequence 186 BP; 63 A; 28 C; 36 G; 59 T; 0 other;
     cagtataatt cgcttagctg catcgatagt tagctgcatc ggcaagatat ctgcattatt        60
     tttccatttt tttgtgtgaa tagaaaatag aaaatagaaa aaaaaaaatt aagttagctg       120
     catttttaag ttacctgcat cgaggcattg tgcaaagtac tcgaggcagc taagcgaatt       180
     atactg                                                                  186
//
ID   Polinton-10_NVi repbase;    DNA;    INV; 5601 BP.
XX
AC   .
XX
DT   02-JUL-2009 (Rel. 14.07, Created)
DT   02-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-10_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5601
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1552-1552 (2009).
XX
DR   [1] (Consensus)
XX
CC   Both ends are incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(704..2566,2406..3716,3571..4425)
FT                 /product="Polinton-10_NVi_1p"
FT                 /translation="QTIKWLWGSLRHAYNGDADVEDIQRWSFLTSKALEGA
FT                 EEISSGPALTREEKQKCQTILRHLHTIQDKLLDLAKRGGDLRVDRSADPPK
FT                 VKWDDFQSAFKTRIRSGVITNLGHLDIVSFFNDVLPLFEEKIKVALSVYDA
FT                 VKVNTELAAEYAIQKNDSESLEVKYFNTKNAPIHQTTDLTKWFEENVQRPV
FT                 QTGMEEFQEKDSGWTLRQILSLTVNVNKFKPMKGSSYIELPEVIKKKQACV
FT                 NVQNRDNECFKWAILSALHPITTHAERVSHYKDFKDELSFKGIEFPLQPKD
FT                 ISKFERQNNISVNLYILKKRGERYEVSPCHVTAEKKEKHVNLLLIQDYYVN
FT                 EEEEEEEEEERPLPKFHYVWIKTLSRLVYSQLSQHREKKHICDRCLHFFRS
FT                 EDNLKEHEVDCVQVNKCKVKLPTEKEKILKFENFKHGERVPYVIYADFECL
FT                 LKPTQDKYAYQEHQAYSIGYYLKSSFNDNHSGYRSYRQEGEEDGQTPAQWF
FT                 VAELEAVKFKMEEVYGKPKPLVLTEAEEQAFSLATSCHICKKPFSKQQTKV
FT                 RDHCHLTGRYRGAGHQGCNLNFKDSRFIPVIFHNLTGYDSHFIIKEIATAA
FT                 NFKGRVNLIPENKDLLHEVYRWKTSRTPASSRSSSTTSPDTTHTLSSRRSP
FT                 PLQTSRDVSTSSLRTRISFTKFIDGSEISFRFLDSLRFMASSLEKLASYLD
FT                 HLDIAKRVFEEDGYSSEQMELLKRKGVFSYDYVSSFDKLKETKLPSQTDFF
FT                 SQLTESGIEDADYAHAQNVWQRFNIASLGEYSDLYLKTDVLLLADVFENFR
FT                 STCLEAYGLDPAHYYTTPGLTWDAMLKHTKVELELLTDIDMLLFVERGIRG
FT                 GVSQCCNRYGKANNQYMSEGYNPLEESKYLMYYDVNNLYGWAMTQALPYRG
FT                 FQWVNNMDTRAISQIDDNDQYGYILEVDLEYPEXLHDAHRDLPLCPEHRAA
FT                 PGSKQQKLMTTLHNKERYVIHYRALKQALSHGLVLRKIHRTLRFEQKPWLK
FT                 PYVDLNTEKRKQAKNEFEKLFFKLLINAVYGKTMENERKRVDVKLVNKWEG
FT                 RTSTPRRGSKRRTSLRSSSSSFSSTQSTARPWRTSAREWTSSSSTSGKVAE
FT                 AIXLARTEIKIRKPIYVGLSVLDLSKINVYEFHYSYMRERYGVGCKLLYTD
FT                 TDSLVYEVRGTDVYEAMKQDIARFDTCDYPEDNKFGMPRQNKKVLGVMKDE
FT                 CAGSVMVEFLGLRSKMYCVRIEDPIKKAKGVKGTVVKNRIDREDYHRCLFD
FT                 REILVRQQQNIRSRKHVVTTEKQEKVALSPHDDKRHLVFGETDTLPWGHYS
FT                 LRACEAALAEGAKICPCNEEESASKRPRLE*"
XX
SQ   Sequence 5601 BP; 1571 A; 1314 C; 1357 G; 1356 T; 3 other;
     tgaggtacca ccattcttgt ttacctctcc tcaacttcct gcttttattt ataatatatt        60
     acatatattt ttatttattt tagaagtcac tctttcctga tcttccttag atgtatccac       120
     tatgtcctga ctatctcgat accgctgtaa taaaaaattc ttcatggaat gaacatttcg       180
     tagggcgcaa acaggattcc agcatagagg atgatggttg cacagcgtgt acacttcctt       240
     ccgaaggttg gttaaagctg gacatccgaa gtcttctaag ttgtaaataa tactgtaaac       300
     aaaaagatat gttttagtat tttattatta tttaaatagt aataattata tacttacctg       360
     tcgtctggta acactttcct cagtagcaat aagtccttgt agcggatctc ccccgcgctc       420
     cagggtatcc cgtggaagtt cctctccaac cagcgatttc tgcaccgact ccccgatgtt       480
     agactggacc acttacaata tggttcgaat aagaatatgg aaggagtcgc atcttcttcg       540
     agagcaagga tcgcaacctc cttgaagatg aactcattgg atgatgtctt gaagccttga       600
     acgtccacca cgtactccat ctcgaagtct actaatcctc tcgagcacta gcgcatctta       660
     actaaatact aatttaaact tttattacag atggcgacca tagcaaacca tcaagtggtt       720
     gtggggatct ctacgtcatg cttacaatgg tgatgctgat gtagaggata tacagaggtg       780
     gtcattccta acctctaaag ctctggaagg agctgaggag atttcaagtg gaccagcctt       840
     aaccagagag gagaagcaaa agtgtcaaac aatcttgaga catttgcata ccattcaaga       900
     caagctcctt gatctggcga agagaggtgg tgatctacgc gttgatcgat cagctgatcc       960
     ccccaaagtt aaatgggatg attttcaatc agctttcaag acacgaatca gatcaggtgt      1020
     tattaccaac ctcggccatc ttgacatcgt ttcattcttc aacgatgttc tccccctctt      1080
     cgaggaaaag atcaaggtgg cactctctgt gtacgacgct gtcaaggtta atactgagct      1140
     tgcagccgag tacgccattc agaaaaatga ttcggagagt cttgaagtga agtacttcaa      1200
     tacaaagaac gctcccattc atcagactac cgacttgacg aagtggttcg aagaaaacgt      1260
     gcagcgacct gtccagacag gaatggagga attccaggag aaagattccg gttggactct      1320
     tcgtcaaatc ctgagcttga cggtaaacgt aaacaagttc aaacccatga agggaagctc      1380
     atacatcgaa ctaccggaag ttattaagaa aaagcaagct tgtgtgaatg tgcagaaccg      1440
     ggataacgag tgcttcaagt gggccatctt atccgcatta catcctataa ctactcatgc      1500
     agaacgcgta tctcattata aggatttcaa ggatgaactc agttttaaag gtattgagtt      1560
     cccattgcaa cccaaggaca tttccaagtt tgagaggcag aacaacatct cggtgaatct      1620
     ttacatcctg aagaagaggg gtgagagata tgaagtgtca ccatgccatg tgactgcaga      1680
     gaagaaggag aaacatgtga atctgcttct aatccaggac tactacgtga acgaagagga      1740
     ggaggaggag gaggaggagg agcgccctct acccaagttt cactatgtct ggatcaagac      1800
     tctctcccgc ttggtgtata gtcaattgtc tcaacatcga gagaagaaac atatttgtga      1860
     tcgttgctta cattttttcc gctcagagga taacttgaag gagcacgaag ttgactgtgt      1920
     tcaagtcaac aagtgcaagg ttaaattacc gactgagaag gagaaaattc tcaaatttga      1980
     gaatttcaag catggtgagc gtgttcccta cgtcatctat gctgactttg agtgtctctt      2040
     aaagcctacg caagataagt atgcttacca agagcatcaa gcttacagca taggctacta      2100
     tttgaagagt agcttcaatg acaaccactc tggttatcga agctacagac aagaggggga      2160
     ggaggatgga caaacccctg ctcagtggtt tgtagctgaa cttgaagctg tgaaattcaa      2220
     gatggaggag gtttacggta aacctaaacc gttggtgctc acagaggctg aggaacaggc      2280
     gttctctctg gctacctcct gccacatctg caagaagcca ttctccaaac agcagacgaa      2340
     ggtgcgcgac cactgccacc taactggacg ttaccgtgga gctggccatc agggatgcaa      2400
     tctgaacttc aaggactccc gcttcatccc ggtcatcttc cacaacctca ccggatacga      2460
     ctcacacttt atcatcaagg agatcgccac cgctgcaaac ttcaagggac gtgtcaacct      2520
     catccctgag aacaaggatc tccttcacga agtttatcga tggaagtgag atcagcttcc      2580
     gctttctgga ctccctccgc ttcatggcat cctcccttga gaagctagct tcttacctcg      2640
     atcatctcga tatcgctaag cgagtattcg aggaagatgg ctactcgagc gagcagatgg      2700
     agcttctcaa acgtaaggga gtattctcct acgactacgt ctccagcttt gacaagctaa      2760
     aggagacaaa gctcccctct caaaccgact tcttcagtca gctgactgaa agcggtatag      2820
     aggacgccga ctatgcgcat gcgcagaatg tctggcagcg cttcaatatc gcgagccttg      2880
     gcgagtactc cgatctctac cttaagacgg atgtactcct gctcgcagac gtgttcgaga      2940
     acttccgctc gacatgtctc gaagcgtacg gtctcgaccc cgctcattac tacaccaccc      3000
     ccggcctcac ctgggatgct atgcttaagc ataccaaggt cgagctagaa ctcctcacgg      3060
     acatagacat gctcttgttc gttgagagag gtatccgggg tggtgtaagc cagtgttgca      3120
     atcgctatgg aaaagcgaac aaccaatata tgagcgaggg ctacaaccca ctggaagagt      3180
     cgaagtactt aatgtactat gacgtcaata acctctatgg ttgggctatg actcaggccc      3240
     taccatatag aggcttccag tgggtcaaca acatggacac tcgtgccatc tcccagatcg      3300
     atgacaacga tcagtatggm tacatcctgg aggtcgactt ggagtacccg gagawcctcc      3360
     acgatgcgca ccgagacctg ccactctgcc ccgaacatcg agctgcgccg ggctcgaaac      3420
     agcagaagct catgaccacc ctgcacaaca aggagcggta tgttatacac taccgcgcct      3480
     taaagcaggc tctgagtcat gggctggtcc tacgcaagat ccacaggacc ctgcgtttcg      3540
     agcagaagcc atggctcaag ccctatgtag acctcaacac cgagaagagg aagcaagcga      3600
     agaacgagtt tgagaagctc ttcttcaagc ttctcatcaa cgcagtctac ggcaagacca      3660
     tggagaacga gcgcaagaga gtggacgtca agctcgtcaa caagtgggaa ggtcgctgag      3720
     gcgatcmagc tcgccaggac ggagatcaag atccgcaagc ccatctatgt gggtctctcc      3780
     gtccttgatc tctcaaagat caatgtgtac gagtttcact actcgtacat gcgcgagcgc      3840
     tacggtgtgg ggtgcaaact cctatacacc gacaccgata gcctcgtcta cgaggtacga      3900
     ggtaccgacg tctacgaagc gatgaagcaa gacatcgcga gattcgacac ctgcgactac      3960
     cctgaggaca acaagttcgg gatgccacgc cagaacaaga aggttctagg cgtgatgaag      4020
     gatgagtgcg ctggcagcgt gatggtggag tttctgggcc tgcgcagtaa gatgtactgc      4080
     gtccgcatcg aggatccaat caagaaggcg aagggcgtca agggcaccgt ggtgaagaac      4140
     aggatcgacc gcgaggacta tcatcgctgc cttttcgatc gggagatcct cgtccgccag      4200
     cagcagaaca tccgctcaag gaagcacgtc gtcaccacgg agaagcagga gaaggtcgcg      4260
     ctcagccccc acgacgacaa gcgccatctg gtgttcggcg agaccgacac cctgccgtgg      4320
     gggcactaca gtctccgggc atgcgaggcg gcattggcag agggcgctaa gatctgcccc      4380
     tgcaacgagg aggagtcggc aagcaagaga ccgaggttgg aataggtaag tcgaaaatct      4440
     gctttaccaa ctatacttcg atactaacct taccttttgt ttcagatgct gaatgagtag      4500
     gaacaacaag ttggtgcttg ttcgagctct ctgcatgctc cgacctgctt gcagcttcct      4560
     aattggtcaa gcggcggcgg cggctcgagt agtcgtagtg gggagaccta tacataaggc      4620
     tgcgaggcag actgcagaga tcattctcac cagtcgactg acgagtgaac ataaccaggt      4680
     attctcctcg tagaagaagc atcctcgtag aagattatcc tcgtagaaga cgcatcctcg      4740
     tagaagatca tccttgtaga agacgtatcc tcgtagaaga tggatctatc agcattgaac      4800
     aaggtggctg ctggaggctt cctgccgacg aagaaggttg tggagttgga gaaggatcat      4860
     tcctacttgg taacagcttt gaaaacagtg aaaactagat atggtccgaa gagacgagta      4920
     tcaactgctc tcaacaagga tgaggcctta ttcaatcagc tgagtgaagc tgcgaataag      4980
     tttaagccta acctatcttg gagataacgg tgtgcagttc ggcaacgctt aagtgggtga      5040
     agaaacggag aggtagttac aagttggttg tacctcacgg gtgggggcgt ggttggggcc      5100
     cccaccacac cgaacaacaa gttgttaaag cttcaacctg ctgaatgctc tctccaaacg      5160
     gttaaaagct agtgaagcag actgtggaga tcatttattg ctgaaatgga attcatgagc      5220
     tggtctctct tggtgaatag ctatccactg ttaaaactga aagaagatta tacttacgtg      5280
     ataacgtcgt tcaaacgtgt tagaactaag tatggtccaa aaatcttcac agttctcgat      5340
     gagaagtttt cattgttgct tccgcatcat ctgtctacat gtttgttgaa tgatgatgtt      5400
     ttgcttgatg aaatgatatc agttgcaaat caacgtaagt tgactctaac ttttaaggct      5460
     gatagaactc tatctgcata tgagatgttc tggagcatag ttaatgatga agatctattc      5520
     aacaagatgc taccacttgc aaaaagggtt agattaaacc tcaagctgta ttgaatggga      5580
     aatcaatgga gaggtaaatt c                                                5601
//
ID   Polinton-1_ACe repbase;    DNA;    INV; 14410 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton DNA transposons from Atta cephalotes, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-14410
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 537-537 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 14410 BP; 4401 A; 2835 C; 2926 G; 4248 T; 0 other;
     taggataagt atggattcta acccacggat acagcaacca gcagatggct ctagtgtcgc        60
     gcggatgggg agggcgaagt cacagatgct gggttcgagg gaggggaagc gcgtcatcgg       120
     gatccgtgtt agaggggaag agggggtttg ttccttctct ctttcacccg ttgcgttctc       180
     tctttaaact attgtcctct ctctctccta tccattgtag gatgcagttc tctctcttcc       240
     acccgttgca gtcctatact tattatttgc gctctctctt cctcccgttg cgctctcttt       300
     tcttttcttc ttttgcacac gattttatta aatagatatg gtatttacga tttttaatga       360
     tacgacttag aaactaatta tgataatatt tttatgaatt tttaataata taacctagta       420
     acactaatta taataatatt cttttttatc aatgtaatac aaatggccaa gcgcgctttc       480
     ttattgacta attcaatact actacgaaga tatgaagaag aagtggcgaa gatactaagg       540
     ataaaataat tttagaagaa aagaatatat attttaacat acatttattt atcatgtaat       600
     gcagtatgta caatataatc taaaccatag actattagtt cacattctat aatagaattt       660
     ttatcataaa ttttgtacaa aatgtttgca gcatcgcttt tattagtaat acaattttgt       720
     cttaaaaatg acacaaaata ttcgaatttc ttactaacat cgtgcgtata ttgactcagt       780
     tcatagaata catgttcaac acattgctca agctcaaata agaaaagcac agttgttggt       840
     ttcatgtaca aacatgtgcc atttaatgtt aacttcacgt tattcgtatc atatatttta       900
     acaagttcca catttagatc ttgaatcggt gatgatgatg ggactgttga ctgcattaat       960
     cgctcgatat ctgcacgcct ctcgatgaac gtcttccacg tagcatgagg tatgaacatg      1020
     cggttgcctc gattatcacc aatcgcaatt tgcacatgag atatagatcc tacaacgatc      1080
     ccaatgtcca gaaatttgta cgctgtcgat gtcaatgcat atttcctcat caagatacga      1140
     ggcatgtagc gaggtttcga agatgtacta gacgatgttt gagaaaatgc gctttgaaaa      1200
     aaaagaaaac atgtaaatag atcttacaaa aatacataac gtataatacg tataagcaaa      1260
     atattttata aaattaaatg aacttactgt ctcttgcacg cctcatcctg ttgaattgga      1320
     acgtaatagt tcatggcttg agatatttta ttttctcgga gaacttataa ttagcaatag      1380
     ctgtctgaac tctgttgaag ctctctgaac gactgcgttg cccggagctc ttcttttaaa      1440
     cagtattccc ttccacattt tttttacaca ccctaaaatg gaggggattt ttttttatat      1500
     acattatatt ttatactttg aagaacagtt gcgacgtggt cgaaggatat caaattgaca      1560
     cacatcataa gaatgcactc taacgatatc gaatctcttt tatctaagga tatcgacaat      1620
     aaagtctgct gttcccatta tcttttttca aaaatgagtt ttaagcaatg tatccaatct      1680
     agaattttac ttatcttaaa aaatatgcaa gttaattttt aatgtaactg tcattaagcc      1740
     taatgcacaa tgacacatgt actaagaatg cactttaatg atatcgaatc ttttttttat      1800
     ctaagagatc gacgccacaa caataaagta tgtctgttca tgaaaataat gtaccatcaa      1860
     tatcccattt ccatctagtc ttttgtcaaa aatgtggaat ttacatatct tagttacgat      1920
     gtagaagtca ttagaccata ctatgaatca tcacctagag ggatacaaaa gtaaaaaatt      1980
     cgataatgga aaaagaatgt tcacaaaaat gcaactccta ccctcagtag catataaaaa      2040
     tggagagatc cgtatacacg ctgtcagtag tgaaactgaa aggtttaagg gaatacatac      2100
     gcgaatcttc aatttttaca aaattttttt cttcgagttt tattcaagat ggaatacgaa      2160
     gatgtagtag aagcagaaca tgaagctcaa gaagaattag aaattgattt agaagattta      2220
     gaagatgaat ttataattgt tgaagaagaa tcagaatcag aatcagaata gtatcgcgga      2280
     ctcatgttat gaaagcgaca gtgacagtca tgctgaagta acaagtcgtt cgataacgcg      2340
     agctgaaatc aatactttgg atggaacaaa taggatgtgc gtcatatact tttattattt      2400
     atatacttca aaccattctt cagatcgtga caagttttgc tcatcgtgca tcataagaat      2460
     gcatgattta tttttacgtc ttcacgctgt tcgccaacat gttattagtc aatatatata      2520
     tacatattga cggtatgtat tgtaaggaat gccgagatcc gctgtatcaa atattaccat      2580
     gcaatctatg ccctatttgc acaatgtgaa agacatttaa cgcaactgtg caaaaattat      2640
     actttttagt gactgtgtga aaattatatt ttagtgactg tgaaaaacag tacattttaa      2700
     tatggatcaa acggagcgtg atctcatagc gcaagccgct cagttaaata cgcgagaaga      2760
     gtttcttgcg tgggaacagc gttgcgataa tttcatcgaa tcgctggagg aacagagtcg      2820
     tgctaaacgt ccgcgattat cgattggtgt taaacaatcg ttgatcgctc gtatcgcgag      2880
     actcgaaaat ttgaaagata ctgtgcgcga acgttttgtg caagtgggtg ccgggtatag      2940
     cgcgggactt cgatggcgcg agattgatac agcgttcgaa agccgtatat tgaccggtgc      3000
     cgtaataaac tctggacaca tcgaacctcg ccaattcctc gaagatgcga gagagatagt      3060
     gctggaacgt gtgcaaagtg ttattcagaa acatgataat attaagataa acacagtgtt      3120
     taatggtgaa tttgtatcgg gtgataaacg tgcgaataaa agtgtgagca cgagaaacta      3180
     tgaactcttc cgttcgtccg atttgcaaga atggtacgcg tcgcgcgtgg tcgagcctat      3240
     cctgacatcg ctggaggaat tccaggaacg cgatagcggg tggacgctgt cgcgtatcct      3300
     gaatttaact gtaaacgtaa acaagtacaa tccgttgcac gcgggatgtc gcatcgaact      3360
     cccgcgagaa attaaaatga agagagcggt ggtcaacgtg cgatccatgg acaatgcatg      3420
     ttttgcctgg tcagtggttg ccgctctaca tccagctaaa aagcatacgg atgcgagagt      3480
     catcatatcc gcattattct acagtgctaa atctaacagg catccagttc ccaatgacgc      3540
     tgaatcaaat taaaagattt gaaagtctca acgacatctc catcaatgtt tatctcatcg      3600
     aggagcaaaa agaaattctt ccattacggc tcaccgaccg aaagaggggc aaacacgtca      3660
     atctcttgta cgtacaggat ccatgcaacg ataatacagg gcattttgca tggatcaagg      3720
     atttatctcg ccttgtgaga tcgcaaatta cagcaacaga agaatagaat atatttctgt      3780
     gataggttcg tatacattta aaaagaaaaa attataaata ttttcagcaa catttttttt      3840
     aaataataat aaaaatttgt tattttccag attgcctaca ttatttcaga tctagcgcaa      3900
     aactagagat ccacgcagca gactgtggaa aatttaacaa ctgcgcgatc cggctgccca      3960
     gtgaggacaa caagttaagt ttcagcaact actgcagaaa ggaacgcgtc catttgtcgt      4020
     atatgccgac ctggaatgca ctctggaaag gatggaaaag gaagatatgg aaacattaag      4080
     ctacatgtac caacatcatc aggtttttag tatagcgtac tatgttcatt gctcgtacga      4140
     tgactcgctg tcgaagtatc ggtttcgtcg cgataacgat tgcatagcat ggttcgccga      4200
     ggaactaaaa aatttagcac ataatgtcaa aactatctta tccgctaatg ttctccatgg      4260
     cagattttac gagagacgat tggataaaat ttaacagcgc tacgcactgt catgtgtgcg      4320
     agaagccgtt cgcaaaagat gacacacggg tacgcgatca ttgccatctc accgggcgat      4380
     atagaggccc cgcgcattca aattgcaact taaattacaa agattcacat tgcattccca      4440
     tagtttttca taatttatcg ggatacgacg cacatttcat catcaaagaa atagccaccg      4500
     cttacgaagg acgtgtagat ttattaccga taacgaaaga aaaatacatt tcgtttacga      4560
     aacatgtcga tagcactata gacaaaaatg atcaaaagaa aatttgtata aaattacgtt      4620
     ttattgattc gtttaaattt ctcgcatcaa gtttagaaaa attggcatcg tatctcgata      4680
     aaaataaact acggatgcag cgtgaatttt ttaatttatc cgcagaaaat ttcgatttat      4740
     taacgcgaaa aggtatattt ccgtacgaat atgttgactg cgtcgaaaag ttggaggaag      4800
     ctgagttacc atcacgcgaa tctttttata gttcgttgac aggtgacacc gtatccgaaa      4860
     gcgattatgc gcacgccgtg aatgtatggc agcgattctc cattcgaacc ctcggtgaat      4920
     atagcgacct gtacttaaaa acagatgtat tgttgttggc cgatatattt gagaattttc      4980
     gggatagttg catcacgagt tatggactcg atcctgcgta ttattataca ctaccgggtt      5040
     ttacgtggga cgcgatgttg aaacatactc gcgtcaattt cgaacttctt accgacgttg      5100
     acatggttct attcatcgaa cgtggtatac gtggcggtct gagtcaatgt tcaaacaggt      5160
     atgcgcaggc caacaacaag tacatgcagt cgtacgatcc atcgaaacca tcgacgtacc      5220
     taatgtacta tgacgtcaac aacctgtacg gttgggcaat gtgtcaacca ttgccatacg      5280
     ctgattttcg ctgggtcgac gacgtagaca attttgatgt tatgaatgtc gcgttagatt      5340
     caccgacggg ttacgttctc gaggttgact tggagtatcc gcaacattcc atgatgcgca      5400
     ctccgatcta ccgttttgtc caacgcgcga gaaaccaccc ggcaagcgag aggagaagct      5460
     cctcgcgaca ttgtatgata aaaagcgtta cgtcatacat tatcgcaatc tgcagcaatg      5520
     tactcgtcac ggtctccgca ttacaaagat ccatcgtata ctgcaattcg cgcaatctcc      5580
     atggcttcgc gagtacatcg aactcaatac aaattttaga actttagcaa agaatgagtt      5640
     cgagaaaaac ttattcaaat taatgaacaa cgcggttttc ggcaagacca tggagaatgt      5700
     gcgtaaccat gttaatgtgc gactcgtaat gcgttgggat gggagatacg gtgtagaggc      5760
     aatgatcgcg aaaccaaact ttcacagtag aagcgttttt tccgagaacc tggtcgcgat      5820
     agaaatgcgg aaactcgagg tgaagttcga caaaccgata tacgtaggta tgtgcatcct      5880
     cgatatatct aaaacgtgtt tatacgaatt tcaccacgag tacatgttac cgctctttca      5940
     tgaaaaatgt aaaattatgt ataccgacac ggacagcctt atttatcaca tcgaatgcga      6000
     cgatgtctac gctgttatga aacacgatat caatagattc gatacgagcg attacgcgat      6060
     cgacaatgct tacgacattc cgctagtaaa taaaaaagtt cccggtttaa tgaaagatga      6120
     aaacaatggt gcgattatga ccgaattcgt cgggcttaga gcgaaaatgt acgccttgcg      6180
     cgtcgatggt aaaaaagata ctaagaaggc aaagggcgtc aagagcaacg ttgtagcgag      6240
     atccataacg ttcaatgatt atacgcagtg tctcaatgac acaattgaaa tgacgcgcag      6300
     gcagtcgtgc ataagatcga aattgcacga agtatacacc atatccgaaa cgaaaatcgc      6360
     tctgagtcca tacgacgata agcgatacat tgttccagat tctaccgaca cgctgccatg      6420
     gggacattat aaaatattat tataaaaaaa ttcatttctt ttttttcgta tttatgtatt      6480
     ttttttatta ataaaaacac acttgtatat gatgtataat atatttaata tgtatattat      6540
     ataatatgta tattatgtat agtatgtata gtacgtatgt tgtatatatg tatgtacgta      6600
     tgtatgtata tatgtatgta tgtatgtatg tatatatgta tgtacgtgtg tacgtatgca      6660
     tctgtaatat gtgtaatgtg tataacatgt ataatgcgtt tatatttaat atatatttac      6720
     atagggaaaa aaataattat acaatttgta ataaatttta tttttataac acgctatcct      6780
     tgtgtatcca agagttgtgc gaattatcaa atccgagcca tttcacgtaa accttgtctc      6840
     cttttttacg caacaccttt tcaactagat atacgtcggg attagcgacg cgatgcaact      6900
     catactcata gaatcctcca gcgaccggtt ttccgcggta atcttccagt agatacgtca      6960
     caggattagt tttctgtact ttgacgattc taaacacctc cgtggtccaa tttggcgtgt      7020
     aacctttctc aaagatcgtc ttgaatttgc tcacacgtac cgagtcaccc actttgaatc      7080
     gcgggagtgc gacggccttt acgctactgt acaccgtgtt taagagtttg tcagcaatcg      7140
     tgggagtcac atcgatgggc cgcataccga tagttcgatg ctttcgcgcg ttgtacttag      7200
     acacgagacg cggtagcaag tcgatccatt tataatttcc attgtgcgta aattgtttcc      7260
     acatatcgtt tttcaacgta cgattgaacc gttcaacgac agatgccttc attatggaat      7320
     atgttgaata atgatttatg ttgtgttttt tcaagagttt ttgcacgttt gcgttgtaaa      7380
     attcttttcc catatcggtt tgcaaatttt tcggacatct tccatcgtct cgaattatct      7440
     ttgcgatcgc tgtagccatc tcatttccac tcttggtttt cagcggtacg gcccatgcgt      7500
     gcttactcaa cacatcgata acggtgagaa tatagtgata acctttgttg aatcgtgtaa      7560
     gggcgcatct cgaccacatc agcctgccac aggtcatcgt atccgtaaac tatgacacgt      7620
     ctgcgtggaa aattttttct cgccggagcg tgcagttctt ccaccagtcg ccacttttcg      7680
     aggtttttct tctcagacat gttacgttat gttatgatta ttgctgtata atgcgtaaaa      7740
     tatcacaaag ttcttaaacg caaacgttgt tcatcggcat tttgatgtca actaaaatga      7800
     ctgtgtatct cgtttcaatt tataataaag ccagcttcac gaagctcctc gataatagac      7860
     aatatttcgt tatcgtgggc gttgtgacct gcctgacgcg aggcctcaag caatcggaga      7920
     cgatccacta gctcgttagg atcgtcccaa tgaacataat cgattttatt gtcgtttagg      7980
     atcatggtgc gtggtattac accttttccg actcttttac ctaacttgtt gtttagtttc      8040
     ctggcgcgtg gcatgcccgt tccaacttgt attttacctg acaccaaggg tgctattata      8100
     ttcttatatt tgtacccttt gctgcccact attggattat ccgctttatg actgcgcctg      8160
     tgagcattcg ttgccaacag tatactttta tatgctagtt tatcattttc tgtgtaaata      8220
     gtatcgtcgg gaattctttt gaaaattaat tcgtacaaac cagtgtacct ttgtacttta      8280
     ctccatctac gatcacaaag tcattagtgt ctacatcgaa atatttgtca ccgagcatcg      8340
     tgccgttctc gctgaggtat acgccataaa cgtgatcgat cgcttttctc tgtcaccacc      8400
     gagaagcatg tttacatatt tttgtccaag tgcccccaat tgattatgca actcctcacg      8460
     aacttgccgc gtttgcaatg attgtttaac taacgtttca agcggttcat tgggcgtttc      8520
     ataaacgtct tcgactgagg aaacgtgcga acgttcgtac gataattcgt gtggttcagg      8580
     cgacgcataa ttggaattcg acgtaatgtt cgattctttt gtacattgct ttttagacga      8640
     cggtgttaat tgaagccatg aattatccat ccagaggtca tcaccatcat tatcatcttc      8700
     atcatcataa catcttcatt atcttcaggt tttcttttct taatattttt atcctttaca      8760
     acgttgactt ctttcttaat tggttgagat tcatcattag cggtgttctc gacaatctgt      8820
     tttagaggtt cgacgatagg cttaaagtgt ttctccaatg ctatatcttc ctctattttg      8880
     ccggttttta aagcgcgata ttttttacga atcaattcac tcgttttcgc aatttgtttc      8940
     gctatcctct cgcgatcctt gagttctttg ttgttatcca tgttgcactc gaaaggaaat      9000
     gttgacgtat tgacaacgac taaccacgtt aaggtatcgc tcattaaatc cttttctgta      9060
     tcgtccattc gtaagcgcac tgtctttatc tatgactacg aatccatact tttgttgcca      9120
     acagcaacga cacagttcgc agaaattctc gtaagacatg tcagtgttta catgatcatt      9180
     gtatacatgt ttcagattgg taccgtcctg gtttgaacag gatcaacaga tttgcattat      9240
     cgcgtataag atgcttcggt atctttgcgt acgtctgaca cagatagaag cagtcgacgt      9300
     ccgcgtgtcg acccatcgca aagtactctc tgatcgcgtc ttgcttgtcg ccacgtcatc      9360
     gaagacaaaa atggaatttg gaagcgcctc gttcggtggt aatacatcgt tattattgga      9420
     gaatgtaaaa taaccaattt cttcaatcgg tgctaataaa ttctccaagt atcggtattt      9480
     tggctgttgc aacgacttcg agtacacgta cacgttctcg aaacgtatgc catgtggact      9540
     ttccagcaaa cttatcaaca cgtttgtttt gccgcagttc gatggaccgc agatgattcc      9600
     gcgtatagaa atcggcagca tgtttccatg cttgcgtatt tctttttcag tctgtacttt      9660
     attgtcgaca ttagtcactt tgatcgtctg cgattgtcgc acgaacttca tatcttctcc      9720
     cttcacgaca ctgataatat tgaaaaaaaa acgacatcga gagcggatgt atttatagta      9780
     gcgcgcaaag cgaaaccgct cagtattcaa aatgcttctt atcgtgtcgg acaactgtga      9840
     tgtacatagt ttaaccgcca aagagttgga atatataccg aaaattattt tgctacgaga      9900
     atttaagaat tacatagatc aactgtggga ccgattaccc gagcatataa aggctgattc      9960
     agaggttcag caacatcgtc ggtgcttgaa acattataat ttgccctgcc atcgatcgca     10020
     tattgatgat ccagcgccgt ttataagaaa ttgtagcaaa tgtcaacaac aacaacaaaa     10080
     ggctgcggtt ttttaaatca cgcgataaac gcacttccga tcgagttgca tatccccgga     10140
     tatcaatttt gtggtccagg tacgcattta gaaaagcgat tggctagagg cgatcgaggc     10200
     attaatccgt tggacgcggc gtgtcgcgaa cacgacatag cttattcgcg gagcaaagat     10260
     ctcacgaaac gacacgtagc tgacaaaata ctcgctgagg aggcgcggaa acggattacc     10320
     gcgaaagatt cgactcttgg agagagagct gctgccacag ctgtttgggc ggctatgaaa     10380
     gccaaaacga aaattggtat gggcatgaaa acgaagaaga aaaagccgac gaaaaaacga     10440
     atattaccgg tggcaaaacg cggtatctta tctattctac cgctattggg agtcttcggc     10500
     tcgttggtca gcggcgcggc aggagtcgca aaagctataa acgataataa agccgcgcaa     10560
     catcagttgg aagaactgaa acgtcataac cgcgtcatgg aaggtcatgg agtttacctc     10620
     gctccataca agcgtggacg aggagtcaca acggaaaaaa taaaaaagat taaaaaaaac     10680
     gttaaacagt tgccaaaaat gccgaagggt gtaactacca acgtacaact gcaacaactg     10740
     gcaaaacgta tgcgtattcc atattttaga gatattttta tgcgtactac cttaccaaca     10800
     gggggagtgt atcgaaacga gagcagtatc gtaaatttgg ataatgctga tggaccaggt     10860
     atcattgggt ggcgtacgcg aagcggggag atcgtgctgt ttactttgat agtttcggca     10920
     atcttcgacc accgaaggaa ttggtgcgat atttggacgt aacgcaaatc gagtataatc     10980
     acgccttatc aacgttacga tcaaagcaac tgtggacaac tgtgtctaca gtttttacag     11040
     acggttgacg atcaatttaa gaattgacat tgcactcttt caactcagta ttcatttaaa     11100
     catgtcactg acatttacgc tcaccggtaa gagtagcgtc ctgctacttt ccggccgtag     11160
     atttgagcga tggcgattac gagctcggtc tgacggactt tgaaacctac catacgatat     11220
     ctaatgtaaa ttcattgaat aataagtttt actttgacga agatgacaaa gaaattgtca     11280
     ttcccgaagg atcgtacgaa atacgtgaca taaacaagta tctaagacgt gcaattctac     11340
     aattttatcc taatgatgtt gcgagagaga aaacgcttcg caaagaggat gaacagtacc     11400
     cattgactat tcatgccaat aacaatacaa tgaagagtga gatcaaatgc gcttatcgag     11460
     taaatttcat caaacctcac aatattggat cgctgttggg attttcatcg aatcgcgtgc     11520
     tggagccgca acagtggcac gaatcagacg tatcgataaa tatcatcaac gtaaatatca     11580
     ttcgcattga atgcagtaca gcaacgataa gtccgtgcac acgatacatg aattttcacc     11640
     gagcgtgtca ccaggatata agatatcgga aagaccgaca cagatcattt accttccgat     11700
     catcgtacgg agcattacgg atctgacgat tcgcgttgtg gatcaagacg gactcgattt     11760
     tcgcggagaa gaaatcaccg ttagattgca tgtacggagg cgacagcgat aaagagatat     11820
     gacaacaata atgtgagatg cttgttctga acgagcaggc gaaacagaca ggggacataa     11880
     tttttgccag agggacgaca gcgatcaaaa atattcgagc gtccagtaga aagaaactca     11940
     ctgcgtcgaa cgttaaattt ttacaatcat tgggctttgt tgtacgaaat atctgagatg     12000
     gttgatatct tgaatattgg aggcgaacca atctttgacg atcgcatcgt caagttcgag     12060
     tttcacacgt acaatccgta cgtcaacacg acgtttggac atagcgacga gataaggata     12120
     cccatacaac aacaggattt atacacgtta ccgtgtgaaa gcattctcta cgtcgaaggt     12180
     agattgactt caaaggaaaa aaatgtacaa aagcaaccaa atcttggatg taattgtgtg     12240
     gcgttcatgt tcgatgaaat tcgatatgaa ctcaacggta tggagattga tcgcagcaga     12300
     aacgttggaa taactagtct tatgaagggt tatgcaacgt tttctaatga aatcgcatat     12360
     agtttgcata atgctggatt tatcgactct agtgataccg cgaaaagcct aatgacagac     12420
     gatggatact ttaatttttg tgtaccgctc agcatattgt tgggcttttg cgaggattac     12480
     aaacgtgtgg taattaacgc tcgtcacgaa ttaattttga tacgagcgcg caacggtaac     12540
     aattacatag tgggagatcc agcgacagag ccgacgcttg aattattcaa agtacagtgg     12600
     cgaatgcctc acgttgcgtt gaacgaagtt aataaactat ccatgctgcg cgctttagag     12660
     agcggacgat atctgagtat gagtttccgt tcgtgggatt tgtatgagta ccccctattg     12720
     ccgagtacaa cgaagcattc ctgggccatc aagactgcga ctcagctgga aaaaccacga     12780
     tacgttatct ttggtctaca gactgataaa aaaaatatca tgacagcacg taaaacttac     12840
     ttcgacacct gtaaattaac caatgtgaaa ctttatctaa actctgaatt ttatccgtac     12900
     gatgatctga atctagactt tgacaaacgc agagccgcta ttttgtatga tatgtattta     12960
     cgtttccgta cgtcttacta tcaaatccct cgtgaaagaa atgaaccatc attccaatta     13020
     cactcctttt tgaaaggttt tactctagta accattgact gctcgcgaca aaacgagtcc     13080
     gtcaagagtg gcaccgtgga tgtacgatta gaatttgaat tcaaagagaa tgtacccgcg     13140
     aatacaaccg cctattgcct tatcatacac gaccgcgtga tcgaatatag cccaatgtca     13200
     aatgtagtac gcaagattac gtaaattatc atcaaaaaaa taccctcccc ctctttttaa     13260
     tatatgagat aaaatccaag atcctttgtg gtcaagcaca gtctcaaaaa gtcgttcacc     13320
     atgactatac caacgtttgt agatctgcaa ggatttatcg ttggaaagaa atttgtcgtg     13380
     aaggaagtgg cggtgttgag aaaaggagct attctctctc attatatttt tacgtcatgc     13440
     catggaactt cttgacaaag tcagaaaagt attgcgcttc ctggctgagt gcttatcacc     13500
     atggattgca atgggaagac gggatgatcc cgtacagcat ggcgaaacgc ctgattacaa     13560
     tggctgtaat tggtgcggaa gagaatgaca ataaggctct tgtatacgtt aaaggacgtg     13620
     aaaaacgcga atggctggct ggtatactcg atagcgacga ctcgacaatt gagactctgg     13680
     atgctgatta cgaagatata gattctttac ataatctaga tgttactaat actgtacgat     13740
     ggaaaacatg ttaagaattg tgcgttacag aatgtattta aaatatacaa ctggtggtcg     13800
     caacgccaga aaaaaatata tcaagtttaa aaaataaagt atgagatttt tttaaatgca     13860
     ttttaatttc tttcccctat tccctataat taagaatcta tcaataatga tagttgttca     13920
     gtattatata gtttaataag tgttcgatag ttactcaata acagttttaa taatgattcg     13980
     ataattagga acgcttggtc atttgtatta ctaaacatat tatcagttgc taaattaaaa     14040
     ttattgccga gtcatattat taaaaaaatc gtaaaaaaaa aatatcttta ataaaatcgt     14100
     gtgcaaaaga agaaaaaaaa gagagcgcaa cgggaggaag agagagcgca aataataagt     14160
     ataggactgc aacgggtgga agagagagaa ctgcatccta caatggatag gagagagagg     14220
     acaatagttt aaagagagaa cgcaacggat gaaagagaga aggaaacccc tcttcccctc     14280
     taacacggac cccgatgcgc ttccccctcc ctcgaaccca gcatctgtga cttcgccctc     14340
     cccacccgcg cgacactaga gccatctgct ggttgctgta tccgtgggtt agaatccctc     14400
     tattatccta                                                            14410
//
ID   Polinton-1_CoFl repbase;    DNA;    INV; 16254 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-16254
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2106-2106 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~700-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1741..3246
FT                 /product="Polinton-1_CoFl_1p"
FT                 /translation="MEQLRENFANANAVERYVIFCEIARIEYQRLLHSDNM
FT                 TEIRDFIDNSEIVLKSISDYKLSVKLSSPVENKLLNIECLLSTFLAAFYKI
FT                 LEVQGSGLDEKLDNQDDYNFVTWKDLNSAFKNRIRTAVITNSRHLDIIKFL
FT                 KSAEKIFILKVREILDEQNALKINTVLAAEFLTVKNDTETVEVKYFNTKSD
FT                 SIFDTTDLHEWFKTNVQKPISTDIEEFQERDSGWTLRSILNLVVNVNKYNA
FT                 MSGSSYIELPTTIEKKKACVNVQNADQQCFKWAILSALHPVNKNAQRVSNY
FT                 TQYENSYSFEGITFPVQPKQVTKFEKQNNVSINVYFLEKSKNSYKTLPLHL
FT                 TAEKKDKHINLLLIQNYYIDTYSEGKSKKQKNIDGERDDFVNAEAMDEDEV
FT                 EEDREGFFNAEAMDEDKVEEDREEYLEGIQDGDNSADNDIKYHYVYIKDLS
FT                 RLVRSSLTKHQHKIYICDRCLHYFTTDEMLKTHTVECVKVNKCKISLPRYD
FT                 NKILKF"
FT   CDS           4051..6177
FT                 /product="Polinton-1_CoFl_2p"
FT                 /note="DNA polymerase B."
FT                 /translation="MLKRKGVFPYDYVASFEKLEEIGLPSKDDFYSKLYNA
FT                 HISSEDYIHAETVWKTFDIITLGQYSDLYLKTDVLLLTEVFENFRNNCLKV
FT                 YKLDPAHYFTTPGFTWDAMLKKTKVSIMYKNIMSIVL*LLIENFFQISLEL
FT                 ITDIDMFMFIEKGIRGGISQCCNRYAEANNHYMENYKKDETERYIAYFDVN
FT                 NLYGWAMTKKLPYGGFQWVENVEQQPHDFYNIGNESAYGYILEVDLEYPEE
FT                 LHDSHKDLPFCSEHISAPGSKQPKLMTTLSNKHKYVLHYEALKQATNHGLR
FT                 LTKIYRALKFWQSAWLKEYIDLNSIERKKAKNEFEKMLFKLFNNAIFGKTM
FT                 ENERKRIDVKLLNHWDGRYGAASYIAKPNFHSCDIFDENFVAIQLQRAEVM
FT                 MKKPIYIGLSVLDLSKTLVYRFHYDYMLSKLKNDCKLLYTDTDSLIYEVTN
FT                 HDIYKMMKLDINEFDTSDYPENNKFTMPLKNKKIVGLMKDECNGNIILKFV
FT                 GLRSKMYSILLENENVIKKAKGVKSNVVKATIDFNDYTECLRDQIININRE
FT                 QINIRSRHHKLYTERQNKIALSSRDDKRYILSNTTDTLPWGHYRIKIIEEQ
FT                 RAGECVENHSRPAANEKAANVEGEISPVVGESLYHRQHQPAELSQSCSEQI
FT                 KVSTASSSNASSSGQQQALKRTGLELKNFYRDKQICLEQQSSEIKVCNVFS
FT                 YSYIFFYYL"
FT   CDS           9017..8061
FT                 /product="Polinton-1_CoFl_3p"
FT                 /translation="MDTFREEKDVLRQVEKAREAVRRKHRLLKSGRENFEK
FT                 QIGETFKPITDPLLKIIDDTKKVKNVPLSSESLLKKRFKPFKSKINNTDAS
FT                 MFQSANSNSDDEEDTFSSNDTIKDYDTVVEKSDDDDSAHDIDKNEPMNPYL
FT                 QILDRKESELDRIYGIRKEKNGQHILGDSPIYFKNNQIQIKDLRYPMTDGL
FT                 MELLIKKHPDKKHMTPDNLVKYKQILETSSAHKRKFDKNETIRPYNSNKFN
FT                 NVIAPLFNLTQIKKKGGSIPSFKIARLNMQMDYVYWDDPNELVNRLRLLVA
FT                 EKSAGNPSHTNEMNSIVEELREANIIY"
FT   CDS           10007..10873
FT                 /product="Polinton-1_CoFl_5p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MIIHHRKGCGIINTLINKLPIELHVPGYQYCGPGTKL
FT                 AKRLARGDPGINPLDQACKQHDIAYSQDRKNITARNTADKILAEKAWQRFK
FT                 ATDASLGEKAAAFTITSAMKLKSKLGMGAFPSTNSSKVSKNKMKPKKTTLK
FT                 SLIRSASKSMIPNRSARKAISSALKGAQDAVKKAGGRKNIVIPRVLPIPQK
FT                 TGGFLPYLIPAFAGLSAIGTITNGVTGVVKAINDAKVARKQLEESERHNKE
FT                 MEALLLGKGLFLKPHKNGLGLHLRLGKGLKDGKKKFLRKTALPSSHRL"
FT   CDS           9838..9059
FT                 /product="Polinton-1_CoFl_4p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MSFKIYRQTIYSIMFQSQLSQHTVNMSFIDQNIKLPV
FT                 VNFDGIVKQDKKIQRHGDLLPDTIRAVLCGPSNCGKTNSLLALITHPNGLR
FT                 FENVYLYSKSLNQPKYKFLEQLLEPIDGVKYFSYSDHESVISPDKALPNSI
FT                 MIFDDIACEKQDNVKAFFCMGRHKSVDCFYLCQSYAQVPKHLVRDNLNLLV
FT                 IFRQDDMNLKHIYNDHVNTDMTYNEFKKLCVNCWRVGKHGFVVIDKERDVD
FT                 NGRYRRGFDSFAINITHAY"
FT   CDS           11264..11950
FT                 /product="Polinton-1_CoFl_6p"
FT                 /translation="MEESLTLSLSGTSSILEAQYFPPIELSPAHNYVIGLV
FT                 ELLTFNSIPNIDEGNNKFYVGDQVVVFPTGSYEIQDIESFLIDVLQPDDIA
FT                 ISIKPNNNTLRSVITCSHTIDFRPKDSIGRLLGFTERILRDTSTHISDLPV
FT                 AILKVNTLRVECNITSGAYINGEKVHTIHEFFPAVPPGYKIVEVPSQIIYL
FT                 PVAVKIIDHLQVRIVDQEGNLINFRGEVINTRLHLKQLN"
FT   CDS           14301..14993
FT                 /product="Polinton-1_CoFl_8p"
FT                 /translation="MEFYEDYVIEIRGFLDASRQFLPKEVAVVSLMRPAIS
FT                 HWIVRPPCNFSTLPMDVRQNNDFQSKRVHGLRWFEGDCSIRKLQQHLYTVA
FT                 KNAHRIYVYEDNTATYLESTIGCTVINIQQYMVPSRHILNMGYSTKALMCG
FT                 THDVQKSLRRKQYCALSKAHQIKLWLCSLVESSIEPDSECFLDALNSYKKK
FT                 FSKTLPSWDTVDGINANDTDTDTDSDSETDTNVGVKNDDCV"
FT   CDS           12228..13451
FT                 /product="Polinton-1_CoFl_7p"
FT                 /translation="MEEILGIQSGVVFDESVAHYEIHAHRPHIASAFNSSD
FT                 EIRILIQHQDLCLLPSQSSLRISGRITTGDDKSLEKTKLVNNAICHLFEEI
FT                 RYELNGIEIDRCKNVGLTTLMKGWISFSPSQSLMLENAGWIDIEEKKSIIN
FT                 DHSYFEVSIPLSMIFGFAEDYRKVVVNAKHELILTRSRDDVSAVIQVPENQ
FT                 IFEKYKLKLTQIEWLVPYITASDRRKIRLLDVIAKDKPISMSFRNWELYEY
FT                 PLLPKTSRHVWTVKTSNQLEKPRFVILGFQNKRKNDPAFNASLFDHCNISN
FT                 VKLFLNSQYYPYGNLNLDINKNQFSTLYDMYKNFQAAYYGKEPEPMLNKKD
FT                 FITHMPLIVIDCSKQNEALKSAPVDVRLEFEARENFPENVSAYCLILHDRI
FT                 VEYNPISGDVRKLV"
XX
SQ   Sequence 16254 BP; 5218 A; 2918 C; 3172 G; 4944 T; 2 other;
     gtaggtaaac catggcggtt ctggcacccc cccagctccc cccctgaggt agtggtgggg        60
     ggagaggctc tagctatagc tgtgggtgga gaagaggcgg tggaggagag gcggtggtgg       120
     ggggagaggc tgatcgggcg gtagaggaga ggcggtggtg gggggagagg ctgatcgggc       180
     ggtagaggag aggcagtggt gggggagagg ctgatcgggc ggtgggagga ggggcacggg       240
     tagtaggggc ggtgggtggt gcggactact cggatggtaa cgtcagggga agggggcctc       300
     ttccggatgc tgtgacgtcg gatggtactg acggctccct tcctttccga ccgcgaatcg       360
     agctccgacg tcatcaggat gggtccgaaa ggtgtaggtg acaagcccaa cgtacagcgc       420
     gagaggaaga tgatcaagca tgaacgtgta tttcttatca gtggatgtag cggatcgcgt       480
     atcccgttta gctgcgacca acgttggctt actcgacgca gtaccttgcc aagtaatgga       540
     gctattattt cttatctata cggatgtgtt agccgtggcc gatgactttt cgcttcttat       600
     ttatggcgta taatgtacca gtgtaatatt tttttcttag caagagcggg tgcaacgagt       660
     catgctagga tacacgtatg tgtaagccgt ggccgataac tcttcgcttc ttatttaggc       720
     gtataatgta ccagcatcat atttttttct caagagcggg cgtatcgagt gatgcgtgtt       780
     gccagagaac atgtatacca tttcataacc gaaagcgtat cccaacattg cttggcttac       840
     tcctcttcac cgcagtacct cgccaacgaa tagagtcagt taatacgata aagtaatttt       900
     aatcggcgca gtaataagga ggcgtgaatg aaaaaaatcg acatagattc atgaagaact       960
     aatttattgc ataagtattg tgtatcaggt gtacattgat taaaaaatat cgttttgtcg      1020
     ttgctgctct tttaaaatcc atttttttaa agctgtagca ttcttcacag cacaatgagc      1080
     tgaattaaat tggtgattca tgcattcgat atcatccata ctaatttttt ttaaagctgg      1140
     acattgctta atatcataaa tgtacctata aaaataatta tattatgcaa atatttagta      1200
     aagcgtataa tcatactatg agtaatgtac ctattaaata gcacacggcg caaccattcg      1260
     attttttcaa gaccttttac gtaaataaca tcatcttctt taataatggc tcgaaaggtt      1320
     gtagctagat cctcgtaggg aacttctcct gagctccaac gaagaccgtg gtaattaaac      1380
     tccaaccatc gattttcaca tttgttctta ggtaagagct gtgcccaaga atatgggggc      1440
     ttaaagacaa aaactgacgg tgtagcattt tcttgtagag gtataatagc gacctcttta      1500
     aaaataaatt cgttgtgcat ggttttaaag ccttgaacat caaccacgta cttcgtcatc      1560
     ttaacgttgt gacgattatt agttaactaa cccctctatc gatgtgtcat ctctttatat      1620
     acaactgcta gtcaccgcta gttatcactc gtatcgcttt cgcagaggca aatcagtata      1680
     aaagaaaagt tcaagcagct tgtcattcat ttgagtacgt taacgcgagc tgtaagtata      1740
     atggagcaac tccgcgagaa ttttgctaac gccaacgccg tggagcgtta cgtgattttc      1800
     tgtgaaatag cgcgaataga atatcaacgc ttgctgcata gtgataatat gaccgagata      1860
     cgagatttta ttgataatag tgaaatagtg cttaaaagta tttccgacta taagctgtct      1920
     gtaaaattgt catcgccagt ggaaaataag ttgttgaata ttgagtgtct tttatcaacg      1980
     tttttagcag cattttataa aattctagaa gtgcaagggt cagggctcga tgaaaaatta      2040
     gacaatcaag atgattataa ttttgtgaca tggaaagatc ttaatagtgc ttttaaaaat      2100
     cgcataagaa cggctgttat aacaaatagt aggcatttag atataataaa atttcttaag      2160
     tctgcggaaa aaatattcat tttaaaagtg cgagaaattc tcgacgagca aaatgcttta      2220
     aaaattaata cagtattagc agcagagttt ttgacagtaa aaaatgatac agagactgtt      2280
     gaagttaaat attttaatac taaatctgat tccatttttg atacgacaga cctacatgaa      2340
     tggtttaaaa cgaatgtcca gaagcctatt tctacagata tagaagagtt tcaggagcgc      2400
     gattctggat ggactttacg ctcaatttta aatttagtag taaatgtaaa taagtacaat      2460
     gcaatgagtg gtagttctta catagaactc cctactacta tcgagaaaaa aaaagcttgc      2520
     gtgaatgtac agaacgcaga tcagcaatgc ttcaaatggg ccattttgtc agctttacat      2580
     ccagtgaata aaaatgcaca acgagtgtca aattatactc aatacgaaaa cagttatagt      2640
     ttcgagggga tcacctttcc agtgcagcct aagcaagtta caaaatttga aaaacagaat      2700
     aatgtgtcta ttaacgtgta ttttttggag aaaagtaaaa atagttataa aactttaccc      2760
     cttcacttga cagcagaaaa aaaggataaa catattaatt tgctgcttat acaaaattat      2820
     tatattgaca cgtatagtga gggaaaatca aagaaacaaa aaaatattga cggagaacgt      2880
     gatgatttcg ttaatgctga ggcaatggat gaagatgagg tagaagaaga tagagaaggt      2940
     ttttttaatg ctgaggcaat ggacgaagat aaggtagaag aagatagaga agaatattta      3000
     gaaggaatcc aagatggtga taatagtgct gataatgata taaaatacca ctacgtatat      3060
     attaaagact tatctaggtt ggttagaagt tctttaacaa aacatcaaca taaaatatat      3120
     atttgcgacc gctgtcttca ttactttaca actgatgaaa tgttaaaaac acatacggtg      3180
     gagtgcgtta aagtgaataa gtgtaaaata agcttgccga ggtatgataa taaaatttta      3240
     aaattttaaa atcacataaa taaaaatcgt gtaccattta tagtatacgc agactttgag      3300
     tgtttattaa aacctgtgca taatagtgag cgagcaatac aacaccatga agcattaagt      3360
     gttggatatt atgtaaagtg cagttttgat aacgcgaaat cacgatacat tttctacaga      3420
     aaaaaaactg aaagcagtga gaatccagct acctggtttg tgaaagaaat gcaagatctt      3480
     gccttagatt tacatagaat gtacaacaat ccagtgccaa tgagatcatt aactgaagaa      3540
     gaggactttg attttttcaa tgctgatata tgtcacatat gtgagaagtc tattaaaaat      3600
     gatgaaaaag tttacgatca ttgccatttt actggagagt aagtattata tttatgagtt      3660
     tgtaattgag aaaatttttc cctttaaact aaaattcgct tttttttact cagatatcga      3720
     ggcccagctc acaatgtatg taatctcaag tatcaggact cgcgagcagt accaatagtt      3780
     ttccataatc tcagcaatta tgatgcccac ttatttatac aagaacttgt aacttgcttt      3840
     cccggaagag tacaagttat ccctcaaact aaagaaaaat acatttcttt tacgaagtac      3900
     gttaaaggga cacgcataaa cttacgcttc attgactcgt atagattttt gccgtcgtcg      3960
     cttgataagt tgggatctta cttagagcag tatgatactc tagaaaaggt tttcagtcaa      4020
     gatgataaat actctttcga gcaaatcaat atgctgaaga ggaagggtgt atttccatac      4080
     gattatgtag catcattcga aaaacttgaa gaaatcgggc tcccatctaa agatgatttt      4140
     tatagtaaat tatataatgc acatataagt agtgaagatt atatacatgc tgaaacagta      4200
     tggaaaactt ttgatattat aactcttgga cagtattcag atctttacct caaaactgat      4260
     gtacttctgt taacagaagt atttgaaaac tttagaaata attgcctcaa ggtttataaa      4320
     ttagatcctg ctcactattt cactactcca ggcttcactt gggatgccat gttgaaaaaa      4380
     acgaaagtaa gtattatgta taagaatata atgtcaattg tgctttagtt attaattgag      4440
     aatttttttc agatttcact agaactcatt actgatatag atatgtttat gttcattgaa      4500
     aaaggcatac gaggtggaat aagccagtgc tgtaacagat atgcagaagc taataatcac      4560
     tatatggaaa attataaaaa agatgaaact gaaagatata tagcatattt tgacgtaaat      4620
     aatttgtatg gttgggcaat gactaaaaaa cttccttatg gtggatttca gtgggtcgaa      4680
     aatgttgagc aacagcctca tgatttttat aatattggaa atgaaagtgc ttacggatat      4740
     attttagaag tggatttgga gtatccagag gagctccacg attctcataa agatttgcca      4800
     ttttgttccg aacacatttc agcaccaggt tcgaagcagc ctaaattaat gacaacatta      4860
     agtaacaagc ataaatatgt acttcattat gaagccctca agcaagccac aaatcatgga      4920
     ttacgactga caaaaatata tcgagcctta aaattctggc aaagtgcatg gcttaaagaa      4980
     tatattgatc tcaatagcat tgagagaaaa aaggctaaga atgagtttga aaaaatgctt      5040
     ttcaaactat tcaataatgc tatttttgga aaaacgatgg aaaatgagag aaagcgtatc      5100
     gatgtcaaac ttctcaacca ttgggatgga cgctatggtg cggcatcgta cattgcaaag      5160
     ccaaattttc acagctgtga tatttttgat gagaattttg tagccataca gctacaacgt      5220
     gcagaagtga tgatgaaaaa gccaatatac attgggctta gtgtcttaga tttatcgaag      5280
     acacttgtgt atcgttttca ctacgattat atgctctcca aactcaaaaa tgattgtaaa      5340
     ctcttataca ctgatacaga cagtctgata tatgaggtaa caaaccatga tatttataaa      5400
     atgatgaaat tggatattaa tgaatttgac acatcagatt atccagaaaa taataaattt      5460
     acgatgccgt taaaaaataa aaaaattgtt gggctcatga aagatgagtg caatggaaat      5520
     attatattga aatttgttgg gctcagaagt aagatgtata gtattcttct tgaaaatgaa      5580
     aatgtgatta aaaaagcaaa gggtgttaag agtaacgtcg taaaagcaac tatcgatttc      5640
     aacgactata ctgagtgcct acgtgaccaa attataaaca ttaatcgaga gcaaattaat      5700
     ataagatcac gtcatcataa gctctacact gagaggcaaa ataaaattgc tcttagttcc      5760
     cgagatgata aacgatatat tttatcaaac actacagata cgctgccttg gggccattat      5820
     aggattaaaa taatagaaga acaaagagct ggagagtgtg tagaaaatca tagcagacca      5880
     gcagccaatg aaaaagcagc caatgtagag ggggagattt ctccagtagt gggagagtcc      5940
     ctatatcatc ggcagcatca accagcagag ctcagtcaga gctgtagtga gcagataaaa      6000
     gtatcgaccg cttcatcatc caacgcaagc agctcaggwc aacaacaagc tctcaaaaga      6060
     acaggtttgg agttgaaaaa tttctacaga gataagcaga tctgtttgga acagcaaagc      6120
     tcagaaataa aggtttgtaa cgtgttttct tattcatata ttttttttta ctatctataa      6180
     aactcatata attttcttat gtttcagatg gctgatttag cagcacttaa tcggctggcc      6240
     tgtggaagat tccttccaac aaagaagatc aacgaaatgg tcaaggggca aagtcatgta      6300
     gtgtcgaagc tgagaaaagc taacactaaa ttcggcacga aagctatcgc tgaactagac      6360
     gatcacttcc aaatattttt acctaatcaa gtatctgagt atcttgtgag taacgaacta      6420
     tcatttaata gtttgttgga atctattgat agaaagaagc tgtcagttcg ctacaatggt      6480
     gatagtgttg aattttttaa ccaataaatg tttaattata caaatacaag aaaaagaaag      6540
     ttatttttgt gaaactagtt taacgtgaga aaaaataaat gatacaatct attacatgtt      6600
     tagagttttt atttatctca atgaatctta tgtaagatat aacattacca tgtatkgtaa      6660
     aaaaatttca tttgcacaca taattgataa cattaaaaga ccacaacaag ttttatacaa      6720
     atttttttac aacttctgaa ttttaataat tttttaaagt acatatcact tttattcttt      6780
     gttattatca atccaactgt tatgggtatt gtcaaagccc aaccacttga cgaatatttg      6840
     atttcctcgt cgacgaagaa ttttttcaac aagataagta tcaggatact tggttttctg      6900
     cagttcctgc tcgtagaagc ctccagaaat tggctgattt tggtaatctt tcaaatggta      6960
     agttggtgga ttggttagag ctactcgtgt tatagtgaat acctcagtcg accagttagg      7020
     tgtgtatcct ttttcaaata cttgcttagc attacttatt cgcactttat ctcccacttt      7080
     aaatttcggt tgttttctca tcccgattgt tcttgatgaa tttttttcaa aatttcattt      7140
     tcagtagcag ctgacacatc ctttggtttc atagctattg tccgatgttt ccgattatta      7200
     taggccgtca gtaacttagg taagatgtca atccacttat atctgccacg caagctgaaa      7260
     tttttccaca tatcatgctt tagtgtacga ttgaatcgct cacatataga cgctttaagg      7320
     ttactataag tcgagtacaa gttaattttg ttcttttgca tgagactttg gaaattcaca      7380
     ttgtaaaact ctttgccatg atctgtttgc aaattagttg gaactcttcc ctctgttaat      7440
     atcgacttca tagctgcagt cacatcttta ccggttttat tctttacggg cacagcccat      7500
     gcatacttgg agaatacatc tataactgta agcaaatacc tataaccttt attttcatga      7560
     gcataaggta tcatctccac aagatcagct tgccatgttt catccaagcc tcgaatatca      7620
     aactttcggc gaaggtagtt gcgtctcgca ggtttatgaa gctcttccac tactgcttcc      7680
     atctctctta actgtcttct ggagttatac tagatatatg tgctacaatc tccttaagtg      7740
     tatttatttc acgctgcaaa tttagtattg tttctgagaa tacatcactt aaattgctca      7800
     atagtagatt tattttctct tgttcatcca aaatgaaact tttttctttc tgtaaagtag      7860
     tgagatttac agcatcgtga ggttgaatag ctggtgcaac attgcacaac cttttatttt      7920
     ccaagtcaaa ttgaccatcc gtggtgagat tatatccaat tcctcgagga cctcgactac      7980
     cacctttcga cttagctgat ccacgtccga acacgtcgat gctcattttt acactgaagt      8040
     agaattgata acgatgctca atatatgata ttagcttcac gaagctcctc aacgattgaa      8100
     ttcatttcat tagtgtgact aggattaccg gctgattttt ctgccactag taatcttagc      8160
     cgattgacca gctcgttagg atcgtcccag taaacgtagt ccatttgcat gttcagccta      8220
     gcaattttaa atgaaggtat ggacccgcct ttcttcttaa tttgagtgag attaaataat      8280
     ggggcaataa cattattgaa tttattacta ttgtatggac gaatcgtctc atttttgtca      8340
     aattttcttt tatgcgcact tgacgtttcc aagatttgtt tgtatttaac taaattatct      8400
     ggtgtcatgt gctttttatc aggatgcttt tttataagta actccattaa tccatcagtc      8460
     attggatatc ttagatcctt tatttgaatt tgattatttt tgaaatatat aggcgaatca      8520
     ccaagtatat gttgtccgtt tttttccttt cttatcccat aaattcgatc cagttctgac      8580
     tcctttctat caagtatttg taagtatgga ttcataggtt catttttatc gatgtcatgc      8640
     gctgaatcat catcgtcact tttttcaaca acggtatcat agtctttgat agtatcattc      8700
     gacgaaaaag tatcttcttc atcatcactg ttactattag ctgattggaa cattgatgcg      8760
     tcggtattat taatttttga cttaaaaggc ttgaagcgtt ttttaagtaa agattcagag      8820
     ctaagtggca cgtttttgac tttctttgtg tcatcgataa ttttaagaag tggatcagta      8880
     ataggcttga aagtctctcc aatctgcttt tcaaaatttt ctcttcctga ctttaacaat      8940
     cgatgcttac gtcgaacagc ttctctagct ttttcaactt gccgaagaac gtctttttcc      9000
     tcacgaaaag tgtccatgtt gatcgcttga tggttaacaa gagactaata cgcacttaat      9060
     aagcatgagt aatatttata gcaaaagaat caaatcctct cctatatcta ccattatcaa      9120
     catctctttc cttgtctatt acgacaaatc catgttttcc aactctccaa cagtttacac      9180
     ataatttttt gaattcattg tacgtcatat cagtattaac atgatcatta tagatgtgct      9240
     tcaaattcat gtcatcttgt cgaaatatta ctaaaaggtt taaattatct ctgactaagt      9300
     gctttggaac ttgagcatag gattggcata gatagaagca gtcaacgctt ttgtgacgtc      9360
     ccatgcagaa aaaggctttc acattatctt gtttttcaca ggcaatgtcg tcaaatatca      9420
     ttatggagtt gggtagtgcc ttatcaggag atatgactga ttcatgatcg ctatatgaaa      9480
     aatactttac accatctatg ggctccaaca gttgttctag aaacttatac tttggctgat      9540
     tcagcgactt tgagtataga taaacattct caaatctcaa tccgttgggg tgagtaatta      9600
     aagccagcaa gctgtttgtt tttccacagt ttgacggacc acaaagaaca gctcttatcg      9660
     tatcgggtag caaatcacca tggcgttgga ttttcttatc ttgcttaacg attccgtcga      9720
     aattcacgac aggaagtttt atattctgat ctatgaagct catgtttact gtatgctgac      9780
     tcaactgaga ctgaaacatg atactgtaaa tggtttgcct atatattttg aaactcatct      9840
     gtcatcgaat ttcctaatct tgcttatcag tttgttgaaa tttatgacag gaagttaaat      9900
     attctgttcc tcggagctcg tggttactgc atgctgaaat atgaaactat aaatagtgct      9960
     ctacatatat tttcgagctc attcatcgtt aagcacttgg aaagtaatga tcattcatca     10020
     tcgcaaaggc tgtggaatta taaacacact tatcaataaa ctgcctatag agctgcacgt     10080
     accaggatat caatattgtg gaccgggcac taaactagcc aagagattag ctcgcggaga     10140
     tccgggtatc aatccattgg atcaggcgtg caagcaacac gatatagcct attctcagga     10200
     tcgaaaaaat attacagcaa gaaacaccgc tgacaaaatt ctcgctgaaa aggcgtggca     10260
     aagattcaaa gccacagacg ctagtttagg ggaaaaagct gctgctttta ctattaccag     10320
     tgccatgaaa ttgaaatcca aactcggcat gggagcattc cctagtacga attctagtaa     10380
     agtgagtaag aacaaaatga agccgaagaa aactactttg aaaagcttga ttcgaagtgc     10440
     ttcaaagtcc atgattccta atcgtagtgc tcgaaaagct ataagttcgg cgttaaaggg     10500
     agctcaggat gctgtgaaaa aagctggtgg taggaaaaat attgtaatac ctcgagtatt     10560
     gcctatcccg cagaaaactg gaggattcct accatacctt attcctgcat ttgctggcct     10620
     aagtgctata ggcactatca ctaatggtgt aactggagtt gtcaaggcta ttaatgatgc     10680
     taaagttgct cgaaaacagc tagaggagag tgagaggcat aataaagaaa tggaagcact     10740
     cttacttgga aaggggctgt ttttaaaacc acataagaac ggcttaggtc tacatttaag     10800
     gcttggaaaa ggcttaaaag atggaaaaaa aaaatttcta cgtaaaactg ccttaccgag     10860
     ctctcacaga ctatgacctc atcaagtatg caaaaatttt gaaaataccg catttccgtg     10920
     gagttttcat gagaaatgct ttgccagccg atggcccacg tttttccgaa tcagcaatag     10980
     tcaatctcga tgataaggat ggtcctggta ctcactgggt tgcctataga aagcgaggca     11040
     ataacgtgac gtatttcgac agttttggtg acctacagcc accgattgat ctactgctat     11100
     atcttggtgt tagatgtgtc aaatataatt atgaaaggtt ccaagatttt ggtacataca     11160
     actgcggcca tctttgctta agctttcttt gtaaaaaact taattatcag ccaatataaa     11220
     tgtatcccaa tactcaagta acattagtca ttgacaaacc gtcatggaag aatcattgac     11280
     attaagttta tcaggaacat catctattct tgaagcacaa tattttccac ctatcgagtt     11340
     gtcaccagca cataactacg ttattggtct agtagaactc ctaactttca attcaattcc     11400
     aaatatcgac gaaggtaata ataaatttta cgtaggcgat caagtggttg tttttccaac     11460
     tggcagctac gaaattcaag atattgagtc atttctgatc gacgtgttac aacccgacga     11520
     tatagctatt agcatcaaac caaataataa tactcttcgc agtgtgataa cgtgtagtca     11580
     tactattgac ttcaggccaa aagattctat aggccgtctt ttaggcttta ctgaacgaat     11640
     tcttagagat accagtactc acatctcaga tttacctgtt gctattctca aggttaacac     11700
     attgagagtt gagtgtaata tcactagtgg agcctatata aacggagaaa aagttcatac     11760
     catccacgag tttttccctg ctgtaccacc gggatacaag attgtcgaag ttccatcgca     11820
     aatcatttat ttacccgttg ctgttaaaat tatagatcat cttcaagtac gcattgttga     11880
     tcaggaaggt aacttgatta attttcgtgg agaagttata aatacaagac tacacttgaa     11940
     acaactcaac tgaaatgggc atagtgtaca acaatagtaa agttggacga ggctatgaaa     12000
     acaaattaac gagggtgagg acgaatagtc atccacgaga caacaaaatt ggacgaagct     12060
     ataagaataa accaaaatgg atgagacgga tcagtcgtcg acgaacgctc aaagcgttaa     12120
     cacgtcacaa cgtgcagttc ttaaaaaacc taggcctaaa agtaagagct cttggtggca     12180
     aataacttgt gctttttttt gctgcctgcg aacgagaaaa agttgtgatg gaagagattc     12240
     ttgggattca gtcaggtgtc gtgtttgatg agtcggttgc acactacgaa attcatgcac     12300
     atcgacccca cattgcatca gcatttaata gcagtgatga aattcgcatc ttaattcaac     12360
     atcaagattt atgtctttta ccctctcaaa gttccctacg tatttctgga cgtataacaa     12420
     ctggagatga taaatctctt gagaaaacaa aactagttaa taacgccatc tgccatctgt     12480
     ttgaagaaat acgatatgaa ctaaatggta tagaaattga taggtgtaag aatgttggat     12540
     tgacaacttt aatgaaagga tggatatctt tctctcccag tcagagttta atgcttgaaa     12600
     atgctggttg gatagacatt gaagagaaaa aatctattat caatgatcat tcttattttg     12660
     aagtgtcaat acctttgagt atgatatttg gtttcgctga ggactatcgc aaagttgtgg     12720
     ttaatgcaaa acatgaatta attctcacaa gatcaagaga tgatgttagt gccgttatac     12780
     aagtacctga aaatcaaatt ttcgaaaagt ataagcttaa attgactcag attgagtggc     12840
     ttgtgcctta cataactgca tcagacagac gaaaaattcg tttgcttgat gttattgcaa     12900
     aagacaagcc tatttctatg agtttccgca attgggagtt gtatgagtat cctcttttgc     12960
     caaaaacttc taggcatgtg tggactgtca aaacttccaa tcagttggaa aagcctcgtt     13020
     ttgttatttt gggctttcag aataagcgaa aaaatgatcc tgcttttaat gccagtctct     13080
     ttgatcactg taatatcagc aatgtaaagc ttttcttaaa ctcacagtac tatccttatg     13140
     gaaatcttaa tcttgatatt aataaaaatc agttttcaac attatatgat atgtataaga     13200
     attttcaagc cgcctattac gggaaagaac cagaacctat gctgaataaa aaagatttta     13260
     tcacacacat gcctcttatt gtaattgact gctctaagca gaatgaagct ttgaaaagcg     13320
     cgccagtgga cgtgcgcttg gagtttgaag cacgagagaa tttcccggaa aatgtatctg     13380
     cttactgtct cattctacac gatcgcatcg tagagtacaa tcccattagt ggtgacgtga     13440
     gaaaacttgt ttaagcacgt atataaaatt aaaaaaaaaa aaactagcag tgaagtcagt     13500
     ctttatcatg atggagtaca tggtggacat gcagggcttt aagaagcctg gcaacgatta     13560
     tgtgcttaaa gagttggcga ttcttccact ccatggagat gatgagcctc aagtatttct     13620
     cttcaagccg ccatttcctt ggcgcaaact aaatgataaa tacaaacgtg aaaatttatg     13680
     gcttgagcta tcctatcatg gattagattg gcaatcaggt gttatcgact acacagaaat     13740
     tggtaatgtt cttcgggaga atctcaaaga tgctaagaag atttttgtga ttggagaagt     13800
     gaagaaaagg tggctcgaaa ggtttaattt tcaagttaat gatatggttg attatccaga     13860
     gtttgaactc ccaacattag ctactgcatg tcctcaccat aatggtgcgt atagatctat     13920
     gtgtgccacc cacaatgtca aacgaatgaa aaaattctac tttcatatgg aatgggaaga     13980
     tgttactgat tctgaagaag atgtataata aaaaaactca atgaaactgt attttttttg     14040
     aaattatgtc ataaataaat gtattgaatt atattgttgt tattatttat gtagcctttc     14100
     cctcaaaact agtttaagat taaaatatta agaaccgatg attcattctg ataaaacaca     14160
     cacttgcgca gtgcctacac taacgtgtat ataaactaat ttcggtgcag agtgctgctt     14220
     agttcatcac gcagcatcaa acgcgacgga tacgcgttta tatcgcagtt agtacgacgc     14280
     ttttgagctg caaaataaaa atggagtttt acgaggatta tgttattgag attagaggtt     14340
     ttctggacgc ttctcgacag tttttaccaa aagaagtggc tgtggtgtcg cttatgagac     14400
     cagcgatcag tcattggatt gtgcggcccc cgtgcaattt ttccacctta cctatggatg     14460
     tgcgccaaaa caacgacttt cagtcgaagc gagtgcatgg acttcgctgg ttcgagggtg     14520
     attgttccat tagaaagtta cagcaacatt tgtacactgt agcaaaaaat gcacatcgaa     14580
     tttacgttta tgaagataat acagccactt atttggaatc gaccataggg tgtactgtga     14640
     ttaacattca gcagtatatg gtgccatcgc gtcacattct taatatggga tattcaacaa     14700
     aggcgttaat gtgtggtact catgatgtac aaaaaagtct acgtagaaag caatattgcg     14760
     cacttagtaa agctcatcaa ataaaattgt ggctttgctc tttggtggaa agtagcattg     14820
     aaccagactc agaatgtttt ttagacgcgc ttaatagtta taagaagaaa ttttctaaaa     14880
     cgcttcccag ttgggatact gttgatggaa ttaatgctaa tgatactgat actgatactg     14940
     atagtgactc tgaaactgat actaatgttg gtgtcaaaaa cgatgactgt gtgtaggcaa     15000
     aaaaaaaaaa gagtaaagta agcataaaat ttaagatcaa aaaattaaag tacatcttgc     15060
     cgtgtggtag tacaaagaaa ttagcgccgt cttataagct gatgagaatt tgcgtattgc     15120
     ttcagttatc ctgtgacgat agatcaggca acatcaacaa catgggtccg atctttagca     15180
     aaccaaaata tgagagcctc agtaagaagg aggaggagga ggaagataaa aatagccgaa     15240
     aacctctttt agaaaagcac gttgaggcat ctcaaccaaa agtgaaggga aattattatt     15300
     ccgaaaatat tcgctcttat ccaaataaag atggatatga tatattgaaa aaaaaaatca     15360
     ataaccatga aattcttgtg tatttttttt ttgaagctag caaaaatata tgtgtattaa     15420
     atttaaagtt ttgttattat tgaaacccat ttacatacta tcctaaaaat cttaaactta     15480
     aattcataag ctggctgaat tccttggcaa ggtactgcgt cgagtaagcc aacgttggtc     15540
     gcagctaaac gggatacgcg atccgctaca tccatatgat gctgtacatt atacgcctaa     15600
     atagaagcga agagttatcg gccacggctt acacatactg tatagcatga ctcgttgcac     15660
     ccgctcttgc taagaaaaaa atttacactg gtacattaac gccttaaata agaagcgaaa     15720
     agtcatggca cggctacaca tcgaagaata atagctccat tacttggaag gtactgcgtt     15780
     gagtaagcca acgttggtcg cagctgaacg ggatacgcga tccactgata agaaatacac     15840
     gttcatgctt gatcatcttc ctctcgcgct gtacgttggg cttgtcacac ctacaccttt     15900
     cggacccatc ctgatgacgt cggagctcga ttcgcggtcg gaaaggaagg gagccgtcag     15960
     taccatccga cgtcacagca tccggaagag gcccccttcc cctgacgtta ccatccgagt     16020
     agtccgcacc acccaccgcc cctactacct ataccgcccg tgcccctcct cccaccgccc     16080
     gatcagcctc tcccccacca ccgcctctcc tctaccgccc gatcagcctc tccccccacc     16140
     accgcctctc ctccaccgcc tcttctccac ccacagctat agctagagcc tctcccccac     16200
     cactacctca gggggggagc tgggggggtg ccagaaccgc catggtttac ctac           16254
//
ID   Polinton-1_DAn repbase;    DNA;    INV; 17900 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Polinton from fruit flies.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-17900
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 411-411 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. ~2000-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           2035..3879
FT                 /product="Polinton-1_DAn_1p"
FT                 /translation="MESKIVCDQCKKVITVNEFITHYDSCEGPRNAFAVLM
FT                 NNNPRSSNSSGNKFYRSRTTVPANNSGKAKQPSSKATVMRGDGLQGAANHL
FT                 KRKAGKENGAVNNDVERSDLEEQPSTSKRARIVSSNHLKRKAGKENGSVNN
FT                 DVERSDLEEQPSTSKRARIANAEDVNDSKICMDCKESYNSYNEMEHLTSAE
FT                 HRAALKKLVWGNKNIFPTIENNTFHVEKFRVIGESDICLKEFYNKCKQNLL
FT                 NIIKHGMSEHRSLKVTVSVHGRYIKPADEADTFIETIKNFATPSCSIYENE
FT                 YEDVEKILNNCNDLLIARADEFQEKDSGWSIKQFEYYEIQTVKLQHLPGSG
FT                 YVIAPQNIRKRNALINVKNNDVYCFKWCVLAHLSYMRHIKENFSTSAEKKA
FT                 SREKLARTSFYRVFDISQPFITHEQECLNFSGIEFPITKKGIQLFEKNNAQ
FT                 YSINVYEIINNRIVGPTIRTKEVKQKHIDILGINNPKEKCMHYAYITSIKT
FT                 LCKSQINSSNSERYFCRNCLQFYCTTNKTHNIKECGQVASXYPEPNTKSSF
FT                 KAFSKKLSPPVVIYADIEAVLENYQTASNNPEASFTLPKQKHTACAVSFYV
FT                 AHKYNPELNKLWTYDGK"
FT   CDS           11225..11692
FT                 /product="Polinton-1_DAn_9p"
FT                 /translation="MAKCYHQYYLNQCGEGLSHIGSLYISPRVVQQGRGIG
FT                 NFFSGLFNYIKPLLISGINALKNQAAETGKAVINDLGRKPLRNIIQEQSKI
FT                 ALHNLSDKAINKITKLQNGKGKRHKKRRPRKKRSHLTSKQGRKHTHSKKSR
FT                 KKSTTKFKISDIFSKSK"
FT   CDS           10603..11175
FT                 /product="Polinton-1_DAn_8p"
FT                 /translation="MFFQNEFFVTVLSNDSLNVFPDNVKCAFTNIVNIPET
FT                 MSDEWEVGITDIYLNNCFGKNHKKLRRDTKENTSEESSSNSSEFISLVNSE
FT                 TFRYKAAPLKADEIEYGPIFIYTDIIKPRCVGSKRPRCLRVLFTNGREKFM
FT                 QFRNVEYYPIENYSPNEISILITDSSGYKIPFETSSIPIFLTLHFRKRRKI
FT                 L"
FT   CDS           8955..9638
FT                 /product="Polinton-1_DAn_6p"
FT                 /translation="MFTQFIHPFTMLICGPSGSGKTTFLKNLINDRNDLIS
FT                 DPITRIIWCYGEEQAKPNFSNIEYFHGVPESIENENNEPILLVLDDLMMGA
FT                 FNKNVCELFTKGSHHRNLSVIVVTQNIFHKSSHTRDISLNTKYIVVFKNPR
FT                 DKLQFQCLARQIYPENPQELFRIYKEVTNEPHGYLLIDLTQGINDLLRFRT
FT                 EIFNPLYSVCYSDENGLQKEHKAIESEQTFIVCAQKSK"
FT   CDS           9908..10585
FT                 /product="Polinton-1_DAn_7p"
FT                 /translation="MIKSKHQLTKVILMHPNAYHKLLMNDRGNDLINIKFL
FT                 PILNNKKISDFDKWIKIQQELCAYQNKKRNKAFSHQSVSKSPVSLNQNVET
FT                 QTYITNDWKDSAASTSKGNKNESSLKRGGLPDLPSDDEEHLTEKSSTFPID
FT                 YKRTVTDTSFIDDKVVKKSLVDDKKIIKGPATEKKLKLRNRVKKNRDSPYP
FT                 LRNLKYINDLEKLHRANRKEKNIQIGKNKLNWISYS"
FT   CDS           8194..8706
FT                 /product="Polinton-1_DAn_5p"
FT                 /translation="MNKFERSNSVIVDFQYVVGNNKQIFVKELAFMPGGTV
FT                 IPNFFHFKPPYSLKELDSETLQQHNIHRKNIHGLDWMDGEIPYNCLGDILS
FT                 PLNKFANVIVRGEVKKEFLSKFLSNNIIDIYIGKSLTCYPNFFTNCKIHKK
FT                 VKLRCALNNLFRLFIILENCNYDIYFNGESYV"
FT   CDS           11692..12972
FT                 /product="Polinton-1_DAn_10p"
FT                 /translation="MSNHIECMKSELDLFAPHPTQSCILKTEEVSYNPIAS
FT                 LDSASSIEFVCLGNGETYRDLSSVYLKLVVQLKKIDNSNIEGNAVGVANNI
FT                 LHSIFRSSSVYLNNTLVSQSDNNYHYRSYLQTILNYGCDASESHLATQGYF
FT                 PNYGTQTPFKSDGCLILKNIFQNSNKVELFGKVHGDIFNQPKLLVNNVDLR
FT                 ITFNIEKTAFYLLEDGTESNLKILEAQLFMNHVVVNPSILLAHHHVLQTKN
FT                 AIYPYNKVEVKSFTIYPGNNTLSIDNAVIGQIPNFLVFCMVKNRAYSGNRG
FT                 LDPFNFENFKIQRFNLLVNGVQVPSQALEFDFSNSNNVQSSRAYNLLFRAC
FT                 GIKHYDRGLQISKEMFDKNSFILAFDLTADHSNSSVCSNLISQGTIRIEGR
FT                 FSEPLDEAVTCLVYCEYDSMIDIDKHRNIRVLL"
FT   CDS           3956..6214
FT                 /product="Polinton-1_DAn_2p"
FT                 /note="DNA polymerase B."
FT                 /translation="MKMFVQTLKDETMALYQKYWKDCKEPIHEFDIDDEDY
FT                 QEHGNCYACEEPIEMDDRDKYFDQFSGKYQGPIHKKCKISFKLSSAFFPVV
FT                 FHNLSRYDIHLFINELGGELKPIPSTKELYIALXQKIFQKGVANYSIKYID
FT                 SNRFLNSSLEKLASNMEDXDFKILKSKFSGEKFQQMRRKGVFPYDYXDSFS
FT                 KFNETELPPREYFYNTLTDEECSVSDYNFAKEIWDSFHCRSLRDYMKLYLE
FT                 SDVLILADVFENFRNICQKIYKLDPVNYVSAPSISWDAMMKYTKAELELIS
FT                 DPNMYNFLKRGIRGGLTQCTQRISHANNEYMKNYDEAKPKNYLSYIDANNL
FT                 YGWAMSQKLPFSNFKFLSESEINMFDIINTDSSGDTGFILEVDLEYPDDIH
FT                 DKHNSLPFCPENKVPPGGKIPKLLADLTDKEXYIIHLKQLQLCLQQGLKLK
FT                 KVHRILSFSQSYWLKPYIDLNTKHRKLAKNDFEKNFYKLMNNAVYGKTMEN
FT                 VEKRRNIALVTHYESRRNSPGFRQRVAMHNFHSLEIFGENLAAIESTKTSI
FT                 LYDKPIYIGFSVLELSKWLMYDYYYNFLLLECPSAKIIYMDTDSFIVSCEE
FT                 DIYTIMRENPSRFDTSNYDNINPFNIIPANNKELGLFKDENAGKVMTSFAG
FT                 LKAKAYSFLVETTNDDINIKKVKGVKYSVIKKLSHLDYIECIKHKKTYYGE
FT                 QRCIRSRGHQLYTEVINKISLYYKDDKRYVLIDNINTLAYGHYLLREILNS
FT                 LN"
FT   CDS           7225..6305
FT                 /product="Polinton-1_DAn_3p"
FT                 /note="integrase and chromodomain."
FT                 /translation="MSKHQVVDEIHKPCRKNFLRRRFVQKGIHDTWQIDLV
FT                 EMIPYSNQNGGYKYLLTAIDTFSKYAFGKPVKSKSAIDVATVMKSILKNFK
FT                 YKPKNIQSDQGKEFFNHLFKELMKKNNINHYHTFTHLKASICERFNRTLKN
FT                 KMWKMFSFNGNYRWITHIDTLVEDYNNSYHRTIKMRPVDVCKQNEEFILKT
FT                 CYNIVKVFPKHKYLVGDHVRISKYKGVFLKGYEPNWTTEIFKISKIKSTFP
FT                 ATYELVDYKGEPIKGTFYEAEIQKVKDKNAFLVEKIIRRKKNQVFVKWLGF
FT                 DNSHNSWINKTDLLK"
FT   CDS           7931..7248
FT                 /product="Polinton-1_DAn_4p"
FT                 /translation="MDTLQAKRDKATRKKQDHEVIFGFEYFVAQNLKLKCG
FT                 FSTSRKFTPMIWMQQHKNNYIGIDKEEWMQLLTYKEFIQLKLDQYDFLMSD
FT                 TILDHPTLSSIKCSFRFRKSDKQYVLVLNQFGNKIEIDSESWRSLIRLAIF
FT                 FTTFLCWNTVLKQQITYLYYNHIIPKCVSLQKFDIQLSDLEGNYDKNVQID
FT                 LTRLCFEISKKMTKEIKEDVLHYKKSLISKNSNVNNKK"
XX
SQ   Sequence 17900 BP; 6440 A; 2690 C; 2869 G; 5870 T; 31 other;
     agtagggagt aaacaggcga tcggctaatt tcgtgcacgc gtgtgtgtgt gtgtgtttgt        60
     gtgtgcgtgg gatcctatac acataaccaa acaaatatac atttatatat attcccatgc       120
     cagcaggcat ctcctgtcct ttcttgaggc cttgtcataa attttccacc tgagtgtaac       180
     tgataaaaaa gggccgcatc aggtcgatcg ttgttccgag gttttttgtt gacccttcag       240
     gtttaacgga atttcacttt cttttgacaa ttttttcctt ttgatacttg tttcaaccct       300
     tgtacaattt tatattagaa attaaatttc ttcgtataac tcaaaaaata atttttaaat       360
     atttcaatgg tcttggattg aaaaatcatt taaaatgata tgcaataaca tattatttag       420
     ttttcataat tattttttcc ttatgttgca caaatgatca tagtgatttg gttggatata       480
     tttttcttaa tcaatttaat ttattttttc acacacctaa tttgtctcat aggttgccca       540
     agtgaccaaa tgatcatggt gaattgggtg aatatatttt ttcctaatca attttcattt       600
     agtttttcac aaaccttatt tgaatgtcat aggtggcgca aatgatcaat tgaattggta       660
     gggacttagg caaacggcgt aaaatcgggg ggaaaaaatt cgaaaatggg aatacaggca       720
     aacggcgtat tcaccagatt tactagcgcc acctatgtgt caaatgtaaa atgtggtgaa       780
     tttactagcg ccatctacat gtcaaatgta aaaatgtggt gaatttacta gcgccatcta       840
     catgtcaaat gtaaaaatgt ggtgaattta ctagcgccat ttacatgtaa atattgacat       900
     gtaaaaagat cggctagtca tgaaatttga caggatcatg tagaaaactt gtgtcgagta       960
     aaatgatctg tcaaagagtg ctagcgttct caaatataaa tacatgtaga aaaaaactgg      1020
     aaagccctac cattagtttg cctgtatacc cattttcaaa ttttttcccc ccgattttac      1080
     gccgtttgcc taagtcccta ccaattcaat tgatcatttg cgccacctat gacacaaata      1140
     aggtttgtga aaaactaaat gaaaattgat taggaaaaaa tatattcacc caattcacca      1200
     tgatcatttg gtcacttggg caacctatga gacaaattag gtgtgtgaaa aaataaatta      1260
     aattgattaa gaaaaatata tccaaccaaa tcactatgat catttgtgca acataaggaa      1320
     aaaataatta tgaaaactaa ataatatgtt attgcatatc attttaaatg atttttcaat      1380
     ccaagaccat tgaaatattt aaaaattatt ttttgagtta tacgaagaaa tttaatttct      1440
     aatataaaat tgtacaaggg ttgaaacaag tatcaaaagg aaaaaattgt caaaagaaag      1500
     tgaaattccg ttaaacctga agggtcaaca aaaaacctcg gaacaacgat cgacctgatg      1560
     cggccctttt ttatcagtta cactcaggtg gaaaatttat gacaaggcct caagaaagga      1620
     caggagatgc ctgctggcat gggaatatat ataaatgtat atttgtttgg ttatgtgtat      1680
     aggatcccac gcacacacaa acacacacac acacacgcgt gcccgaaatt agccgatcgc      1740
     ctgtttactc cctactggag gcgtcaggct ctaagcacta tctcgtgttt cgagtcttct      1800
     gattggtttt cccaattaat tgacttgtgg aaattggggg gtggttttca ggtgtttcca      1860
     ttcatggctt caatacattc aaacacaaga acctgttctc atttttatgg atgaataggt      1920
     ttctatgatt attttagaga tacaattttt agtctaaatc tcgctttgcc ggttagaaca      1980
     ttttattcgt aaatttttat tcggaaattt taaaacaacc ccattatcgt taaaatggaa      2040
     tcaaaaattg tgtgcgatca atgcaagaag gtcattaccg ttaatgagtt tatcactcat      2100
     tatgattctt gcgaaggccc gcgaaatgcc ttcgcagttc taatgaataa taatccgaga      2160
     tcctcaaatt cttcgggtaa caagttttat cggtcgcgaa caacagttcc tgcgaataat      2220
     tctggaaagg ctaaacaacc ttcaagtaaa gcaacagtga tgcgtgggga tggactacag      2280
     ggagcagcca atcatttaaa acgaaaagct ggaaaagaga atggagctgt gaataatgat      2340
     gttgaacgaa gtgatctgga ggaacaaccg tcaacatcaa aaagagctag aatcgtgtca      2400
     tccaatcatt taaaacgaaa ggctggaaaa gagaatggat ctgtgaataa tgatgttgaa      2460
     cgaagcgatc tggaggaaca accatcaaca tcaaaaagag ctagaatcgc taatgcagaa      2520
     gatgtcaatg attcgaaaat atgtatggat tgcaaggaaa gttataattc ctataatgaa      2580
     atggagcatt taacttctgc tgaacataga gcagcattaa aaaaacttgt atggggaaat      2640
     aaaaacattt tcccaacaat tgaaaataat acttttcatg tagaaaagtt tagagtaatt      2700
     ggagaaagcg atatatgctt aaaagaattc tacaataaat gtaaacaaaa tcttttaaat      2760
     attattaaac atggaatgag cgagcataga tctctgaaag taacagtatc tgttcacggt      2820
     aggtatataa aaccagccga tgaagcagat acatttatag agacaataaa aaattttgct      2880
     actcctagtt gctcaattta tgaaaatgag tatgaggatg tggaaaaaat tttaaataat      2940
     tgcaatgatt tgctaattgc ccgagcagat gaattccagg aaaaggattc aggctggtca      3000
     ataaaacaat ttgaatatta tgagattcaa actgttaagc tacaacatct tcctggatct      3060
     ggatatgtta tagcccctca aaacatcaga aaaagaaatg cgctcataaa cgttaaaaat      3120
     aatgacgttt attgttttaa gtggtgtgtt ttagcacacc tttcatatat gaggcatatt      3180
     aaagaaaact ttagcacatc agcggaaaaa aaagcatctc gagaaaaact tgcaagaaca      3240
     tcgttttata gggtttttga catcagtcaa ccctttataa cacacgagca agaatgctta      3300
     aacttttcgg gaattgagtt tccaattacc aagaagggta tacagctgtt tgaaaaaaat      3360
     aatgctcaat acagcataaa tgtatacgaa attataaaca acagaatcgt tggtccaaca      3420
     ataagaacca aagaggttaa acagaaacac atagatatat tgggaataaa taacccaaaa      3480
     gaaaaatgta tgcactatgc atacattaca agcataaaaa cattatgcaa atcwcaaata      3540
     aactcttcaa attcggagag atatttttgc agaaattgtc tgcaatttta ttgcacmaca      3600
     aataagacac ataatataaa ggagtgtgga caagtggcat cawtatatcc tgagccaaac      3660
     acaaaatcgt catttaaggc gttctccaaa aaattatcac ctccagtggt gatttatgca      3720
     gatattgagg ccgttttgga aaactatcaa acggcatcaa ataatccaga ggcatctttt      3780
     acattgccta aacaaaaaca tactgcatgt gcagtatcat tttatgttgc tcataaatac      3840
     aaccctgagc tgaacaaatt atggacttat gatggtaaat aaattaaaat ataaaattat      3900
     aagtttaaat aaataatatt aattttccta tttataaatt acaggagctg actgcatgaa      3960
     gatgttcgtg caaacattaa aagatgagac gatggccctc taccaaaaat attggaaaga      4020
     ctgcaaggaa ccaatccacg agttcgacat tgatgatgag gactaccagg agcatgggaa      4080
     ctgttatgct tgcgaagaac ccatcgagat ggacgatcgg gataaatatt ttgaccagtt      4140
     tagtggtaaa taccagggtc ctatccataa aaaatgtaaa attagtttta aattaagtag      4200
     tgcctttttt ccagtagttt ttcataattt gtcaaggtat gatattcatt tatttataaa      4260
     tgaattaggt ggggaactca agccaattcc ctcaacaaaa gaattataca ttgcattawc      4320
     scaaaaaatt tttcaaaaag gggtagcaaa ttattcaatt aagtatatag attcaaatag      4380
     gtttttgaat tctagtctag aaaaattagc ctcaaatatg gaggacaawg attttaaaat      4440
     attaaaatct aaatttagcg gggaaaaatt ccagcaaatg aggagaaaag gagtatttcc      4500
     ttatgattat wtagatagtt ttagtaaatt taatgaaaca gagcttcctc ctagggaata      4560
     tttttacaat acattaacag atgaagaatg tagtgtaagc gactacaatt ttgccaaaga      4620
     aatttgggat tcttttcatt gtagatcttt aagagactac atgaaactat atttagaaag      4680
     cgatgtgctg attttagcag atgtgtttga aaacttccgc aatatatgcc aaaaaattta      4740
     taaattagac ccggtgaatt atgtttcagc tccatctatt tcatgggatg cwatgatgaa      4800
     atacacaaaa gcagagttag aattaataag cgatcctaat atgtataact ttttaaaaag      4860
     agggatacgc ggaggtttaa ctcaatgcac tcagagaatt tctcatgcaa ataatgagta      4920
     catgaaaaat tatgacgaag ctaaaccaaa aaattattta tcatatattg atgcaaataa      4980
     tttatatggt tgggcgatga gccaaaaact cccattttca aattttaaat ttttaagtga      5040
     gagtgaaata aatatgtttg atatcataaa tactgattca tcaggagata ccggatttat      5100
     tctagaagta gatctagaat atcctgatga tattcatgac aaacataata gtttaccatt      5160
     ttgtcccgaa aataaggtgc ccccaggagg aaagattcca aagttattag ctgatttgac      5220
     agataaggaa gkttatataa tccatttaaa acaattgcaa ttatgcttgc aacaagggct      5280
     taaattaaag aaagtacatc gaattctatc ttttagtcaa tcgtactggt taaaaccgta      5340
     tattgactta aatactaagc atcgcaaatt ggctaaaaat gattttgaga aaaattttta      5400
     taagctaatg aacaatgcag tatatgggaa aacgatggaa aacgttgaaa agcgtaggaa      5460
     catcgcacta gtaactcatt atgagtctag gcgaaattca ccgggattta ggcaacgagt      5520
     tgcaatgcat aatttccata gtttagaaat atttggagag aatttagcag ccattgaatc      5580
     tacgaagaca tcaattcttt atgataaacc aatatatatt ggattctcag tgctggaatt      5640
     atccaaatgg ttgatgtacg attattatta taactttcta ttgcttgaat gtccctcagc      5700
     taaaataata tatatggata cagattcatt tatagtttcg tgcgaggaag atatttatac      5760
     aataatgaga gaaaacccta gtcgattcga tacatctaac tatgataaca taaatccatt      5820
     taatataatt ccagcaaata ataaagaatt ggggttattt aaagatgaaa atgctggaaa      5880
     agttatgacc tctttcgctg gcttaaaagc taaagcatat tcatttttag tagaaacgac      5940
     caatgatgat attaatataa agaaagttaa gggggttaaa tatagtgtaa taaaaaaact      6000
     ttctcattta gattatattg aatgcattaa acataagaaa acatattacg gagaacaaag      6060
     atgcataaga agtagagggc accaattata cactgaagta ataaataaaa taagtcttta      6120
     ttataaggat gataaaagat atgtattaat tgataatatt aatactttag catacggtca      6180
     ttatttatta agagaaatac taaattcatt aaattaagtt gaaagatgta acttgtaaat      6240
     aataaaaaaa catgtaaata aaaaaattaa gtttaataaa taaaatatat tttgtatatg      6300
     ttcactttaa taaatctgtt ttatttatcc atgaattatg tgagttatca aatcctaacc      6360
     attttacaaa aacctggttt tttttccttc ttattatctt ttctactagg aatgcatttt      6420
     tgtctttaac tttttgtatt tcagcctcat aaaatgttcc ttttataggt tcacctttat      6480
     agtcaacgag ctcataagta gctgggaaag ttgattttat tttagaaatt ttaaatattt      6540
     ctgttgtcca gttaggctca tatcccttaa gaaatacacc tttgtatttg cttattctta      6600
     catggtctcc aactaaatat ttatgttttg gaaatacctt aacaatgtta taacaggttt      6660
     tcaaaataaa ctcctcattc tgtttgcaaa catcaactgg tctcattttt atagttctgt      6720
     gataagaatt gttatagtct tccacaagtg tatctatatg ggtaatccat cgataatttc      6780
     cattaaagct aaacattttc cacatcttat tttttaaagt tctgttgaat cgttcacaaa      6840
     tagatgcttt aaggtgtgta aatgtgtgat aatgatttat gttatttttc ttcattaact      6900
     ctttaaagag atgattaaaa aattcttttc cttgatcgga ttgtatattt tttggtttat      6960
     atttaaaatt ttttaatata gatttcataa ctgttgcaac atctattgct gatttagatt      7020
     ttacaggttt accaaaagcg tattttgaaa aagtatcaat agcagtcagt aaatatttat      7080
     aaccaccatt ctgattggaa tatggaatca tttcaaccaa atcaatttgc caagtatcat      7140
     gaatcccttt ttgaacaaat cttcgacgta agaaattttt tctacaaggt ttatgtattt      7200
     catcaacaac ttgatgttta ctcatgttta tatttttatg aatcttattt tttattatta      7260
     acgtttgagt tcttagagat taatgatttc ttataatgta gtacatcttc ttttatttct      7320
     tttgtcattt ttttagaaat ttcgaagcat aaacgagtta aatcaatttg aacattttta      7380
     tcataattac cttctaaatc ggataattga atatcaaatt tttgtaaaga gacacactta      7440
     ggaataatat gattatagta cagataggtt atttgttgtt ttaaaacagt attccaacat      7500
     aaaaatgttg taaaaaatat tgctagacgt attaatgatc tccaagactc actatcaatc      7560
     tcaattttat taccgaattg atttagtacc agcacatatt gtttatctga ctttctaaat      7620
     ctaaaactac atttaataga agataaagtg ggatgatcca aaattgtatc agacataaga      7680
     aaatcatact gatcaagctt tagttgtata aattccttgt atgtgagcaa ctgcatccat      7740
     tcttctttat caatgccaat atagttgttt ttgtgttgct gcatccagat cattggagta      7800
     aattttctcg atgtggaaaa tccgcatttt aactttaaat tttgagccac aaaatattca      7860
     aaaccaaata taacttcatg gtcctgcttt tttcttgttg ccttatctct tttagcttgg      7920
     agcgtatcca ttgaaaccga ttgatattaa caaactaaaa tgaaaaactg aaatagtctc      7980
     cttataaagc attggggata tgcataccgg tttcagttta tacatatata tattatacat      8040
     aatgtttata tactaaaata tatatatata tataaatatt ggtatgtatg ctagtaaata      8100
     atgtaatacc tacatatagt atatatgtaa gtggtatata aatagctaag atgagatctt      8160
     aaaagacagt ttacgttcaa aactctggct aaaatgaaca aatttgagag gagcaattct      8220
     gtaatagtag attttcaata tgttgttgga aataacaaac aaatatttgt taaagaattg      8280
     gctttcatgc caggaggaac tgtaataccg aacttttttc acttcaaacc cccatacagc      8340
     ttaaaggaat tggatagtga aactttgcag caacacaata tacatcgaaa aaacattcat      8400
     ggattggact ggatggatgg ggaaataccc tataactgct taggtgatat actttcgcca      8460
     cttaacaagt tcgccaatgt aattgtacgc ggtgaagtaa aaaaggaatt tttatccaag      8520
     tttctatcga ataatattat cgatatatat attggaaaga gtcttacatg ttatccaaat      8580
     ttttttacca actgtaaaat tcacaaaaaa gtgaagctaa gatgtgctct aaataattta      8640
     tttagactgt ttataatttt agaaaactgc aattatgata tatattttaa tggagaatca      8700
     tatgtataaa ttacttaaat aaagaatcag tatgattttg gatctttaat tgagaagttg      8760
     atttggaaaa atggatgggc tctttgggaa tgatcctagt aaaaaaggat acagtcaact      8820
     tatatactgc aactattgcg gatctgatac tcattttgaa aaggactgtg ctaaaaaacg      8880
     cgatcaggaa aaaaaacaat agaatcatta cctgtagcta ataaacattg aaaaattaaa      8940
     aaacttttat caatatgttt acgcaattta ttcatccttt tacgatgctt atttgtgggc      9000
     cctcggggtc gggtaaaaca acatttttaa aaaacttaat aaatgataga aatgatctaa      9060
     taagcgatcc aataactcga ataatatggt gttatggtga agaacaagcg aagccgaatt      9120
     ttagtaacat agaatatttc catggagttc ctgaatctat tgaaaatgaa aataatgaac      9180
     cgatactttt ggtattagat gatttgatga tgggtgcatt caataaaaat gtatgtgaac      9240
     tttttacgaa aggatctcat catcgaaatt tatctgtaat agttgtaact caaaatatat      9300
     ttcataaatc ttcccataca agagatatat cactaaatac aaaatacatt gtggtgttta      9360
     aaaatcctag ggataaatta caatttcaat gtttagctag acagatatat cctgaaaacc      9420
     cgcaagaact ttttagaata tataaggaag taacaaatga acctcatggt tatttactta      9480
     ttgatcttac tcaaggaata aatgacctgc taagatttcg aactgagatt tttaatccat      9540
     tatattcagt ttgttattct gatgaaaatg gtttgcaaaa ggagcataag gcgattgaaa      9600
     gcgaacaaac atttattgta tgtgctcaaa aaagcaaata ataaacttcg aaaagcaatt      9660
     atttgtaata gtgattccga gcttgtaaaa gtattgtctg agattgtgtt aaatacttta      9720
     aaaggaaacc ataaaatttc aaaaaatatc ctgaattcat taaaaaagta taaaaatgta      9780
     ttacgacata tttccagtcc aaaacaatct ttaaattcta agagaaaagt tctaattcaa      9840
     aagggaggat ttttacctat tttaataagc tcattgcttt ctggaatttt tggaaaaata      9900
     ttgaatcatg attaaaagca agcatcagct aactaaagta attttaatgc atccaaatgc      9960
     ataccataaa cttttaatga atgatcgagg taatgatctt ataaatataa aatttttacc     10020
     aattttaaat aataaaaaaa taagtgattt tgataaatgg attaagattc aacaagagtt     10080
     atgtgcatac caaaataaaa agagaaacaa agctttttca catcaatcgg tatctaagtc     10140
     accggtttca ttaaatcaaa atgtagaaac tcaaacgtat attacgaatg attggaaaga     10200
     ttccgctgcc agtacttcga aaggaaacaa gaacgagtca tcattaaaaa gaggtggttt     10260
     acccgattta cccagtgatg atgaggaaca tttaactgaa aaatcatcaa catttccaat     10320
     tgattataaa cgaactgtca cagatacttc tttcatagat gataaggtag taaaaaaatc     10380
     attagttgat gataaaaaaa taattaaagg acctgctact gaaaagaaac tgaaactgag     10440
     aaatagggtt aagaagaata gagattcacc ctatccactt cgaaatctta agtatataaa     10500
     tgatttagaa aaattgcata gagcaaaccg taaagaaaaa aatattcaaa ttggtaaaaa     10560
     taaattgaat tggatttcat attcctaagt caagattcta aaatgttttt tcaaaacgaa     10620
     ttttttgtta ctgtgctcag caatgactct ttaaatgtgt ttcctgataa tgtaaagtgt     10680
     gcttttacca atattgtaaa cattccagaa acaatgtctg atgaatggga agttggcata     10740
     actgatatat atttaaataa ttgttttgga aaaaatcata aaaagttacg gagagataca     10800
     aaagaaaata catctgaaga atcaagctct aattcatcag aatttataag cttagtaaat     10860
     tctgaaacat tccgttacaa agcggctcca ttgaaagcgg atgagattga atacggacca     10920
     atctttattt acacggacat tattaagcct cgatgtgtag gaagcaaaag acctcgttgt     10980
     ctaagagttt tgttcacaaa cggaagagaa aaatttatgc agttcagaaa tgttgaatat     11040
     tatcctattg aaaattattc accaaatgaa atttctatat taataacaga ttcaagtgga     11100
     tataaaattc ccttcgaaac ttcatctata ccaatttttc tgacactgca ttttagaaaa     11160
     agacgaaaaa ttctataaat ataatcgata ttggaaacta gtaattagaa ctaagttatc     11220
     aatcatggcg aaatgttatc atcaatacta tttaaatcag tgtggtgagg gtctaagtca     11280
     tattggtagt ctatatattt cacccagagt tgttcagcaa ggacgaggca ttggaaattt     11340
     ttttagcgga ctttttaatt acattaaacc acttttaatt tcggggataa atgcattgaa     11400
     aaatcaagct gcagaaactg gaaaggctgt tataaatgat ttaggtcgga aacccttacg     11460
     taatataatt caagaacaaa gtaaaatagc tctacataat ttatctgata aagcaattaa     11520
     taaaattacg aaattacaaa atggtaaagg aaaaagacat aaaaagagga gaccaagaaa     11580
     aaaacgcagt catttaacat ctaagcaagg acgtaaacat acgcattcaa aaaaatcaag     11640
     aaaaaaatca acaacaaaat ttaaaattag tgatatattt tcaaagtcaa aatgagtaac     11700
     cacattgaat gcatgaaaag cgaattggat ctttttgcac cgcacccaac tcaaagctgt     11760
     attttgaaaa ccgaagaagt atcatacaat cctattgctt cattggatag tgcatcatca     11820
     attgaattcg tttgtttggg aaatggtgaa acatatagag acctttcaag tgtttaccta     11880
     aaacttgttg tgcaacttaa aaaaattgat aatagtaata ttgaaggaaa tgctgttggt     11940
     gttgctaata atattttgca ttcaatattt agaagctcat cggtatattt aaataatact     12000
     ctggtttcac aaagtgacaa caattatcat tatagatcat atttacaaac cattttaaac     12060
     tatggttgtg atgcaagtga aagtcattta gcaacacaag gatattttcc aaattatgga     12120
     actcaaacac catttaaaag tgatggttgt ctaattctta aaaatatctt tcaaaatagt     12180
     aacaaagttg aattatttgg aaaagttcat ggtgatattt tcaaccaacc aaagctgctt     12240
     gtaaataatg ttgatttgcg tattactttt aatattgaaa aaacagcatt ttatttattg     12300
     gaagacggga ctgagtcgaa tcttaagata ttagaagcac agctttttat gaaccatgtg     12360
     gtagttaacc ccagtatttt attagctcat caccacgttt tacaaacaaa aaatgcaata     12420
     tacccataca ataaagttga agtaaaatca tttacaatat acccaggaaa taatacatta     12480
     tcaatcgata atgctgtcat tgggcaaatt ccaaattttt tggttttctg tatggtaaaa     12540
     aaccgagcat attcaggaaa tagaggatta gatcctttta attttgaaaa ctttaaaatt     12600
     caacgattta atctattagt taatggagta caagtgcctt cacaggcgct tgaattcgat     12660
     ttctcgaatt ctaacaatgt acaaagttca agagcatata atttactatt tagagcatgc     12720
     ggaattaaac attatgatcg aggtctgcaa atttctaagg aaatgtttga caaaaatagt     12780
     ttcatattag catttgattt aactgcggat cactcaaatt caagtgtttg ttctaactta     12840
     atatctcaag gaacaataag aatagaagga cgattctctg aacctcttga tgaggctgta     12900
     acatgtcttg tttattgtga atacgattct atgattgata ttgataaaca tcgaaatatt     12960
     cgggtacttc tttaaaaatg aatacaatac aaatcatgaa cttgctttca agcaatcaac     13020
     aaactaaaaa aatatttaaa ggcgtttttc cagcagataa actaccaaaa gaaattagtg     13080
     aatacccagc attatttgtg gttaacactg attattcaaa ccaaccagga atgcattggg     13140
     ttgcatttta cttctataac aaaaagtctg ctgaattttt tgattcttac ggacaatatc     13200
     cccagaaaaa agaatttgtt acatttttaa agagaaatgc atcaaaatat acttataaca     13260
     aacagcaatt gcaaggatac ttttccaata cctgtggaca ttactgtatg ctatttgctc     13320
     tttacaaaag caaccgaaaa actttaaaga gttttatcag gaatttcaaa acaaaagatt     13380
     tcgcctataa tgataagcta atttcaaaaa tgtttagtaa atgctttaaa tgaatttata     13440
     atcttaatat gaaaataaac aaatttttat atattatata aaaaatatat ttttattttt     13500
     cgggttcttg atacattctt ttagttattt tataatatct tatcataata tccatggctt     13560
     cctttatgta tattggaagt ttgtggcaat tacaagtgtc ggggccctca gttgcgtcat     13620
     catcactcca gggacatatt ttgtagtgaa atccatattt tgagtacagg agctcctttt     13680
     cttccaaatc ttccagggtt gcttttagat attcaagttt tttttggtgc tcctcgaaaa     13740
     gcatatcctc aaattgcagc agaaatagtt tgatttgatg cgaatacatt ttcgaggtgt     13800
     ttgggattat gtagaagaca caagactgat gattcacaat aaggaataga ctcttttata     13860
     ccatcactct tttgatataa attgtaaaaa tggagtgcta tatctagtca tctcttttcc     13920
     tttatatact agatgcgtta ttccattttc cttcaatttc ttaaatggtg ttttagttga     13980
     aaatttattt acataactct ttggtaaaaa tatccacagt ggttcgtcat ccttgccagt     14040
     taagtaaata gcgattttag ttccatatgt tgttttcttt atcttacacc caatgatctt     14100
     gtactcaaaa ttaatacata agtcctcgat ctttgtgtag ccaataacag gcttttgatc     14160
     attcagagta tctaagaaag actttggttc ataatacata agtgattcga gctcttttat     14220
     tggatgaaaa atatttccac ctaccattag attaatatta tatactcccg gagtcgatta     14280
     aaaaagaaaa ctgaatcatt taatcagtga tctcgctctt ttatactttt caatattgaa     14340
     aaaccccatc ccatctcatt gtgggcatat actttttaaa taaaatgata gaaagagatg     14400
     tcaatatgat tatttttaaa ttttaatgca actattattt gataataaga ctgaaagaga     14460
     tgcttgaatg attctttcat tttgttatat ctatgtatat tgtatccata ttgaatattt     14520
     tcctcataac atcctataaa aggagttcta gtttgttctt taagtcagtt tataacataa     14580
     atatcgaaat ggaaacattc gtttgtgatc tttgtataga cagtccctca tttaaatatc     14640
     gttatggatt aaaacgtcac attctaaaag tgcataactt cagcatcaca aaagctcgat     14700
     catcatacta taactgctac ttttgtcctg aagtgcaaaa gtactggctc cgagatgaat     14760
     tatatttgca ttttttaatg catcatccca agatattaat agaattaatt aacttaagaa     14820
     taaagacatc caaataaatt tcaatattca tcaatccatt tatataatga ttaatgcttt     14880
     atgtgagata aaaataaaaa accataatta aatttttata gaaattttta ttttgccaga     14940
     catttttatg tatagtttta ttcaatattt ttcatatatt catttaatat tgcatcatct     15000
     tcttcattca ttaattttaa ataataatct ttatcttgaa ttaattccga aaaaatgtta     15060
     tcgtcatctg gaaatgttgg aatgccacaa ttttcatctt gtgtctctgg gataaaacat     15120
     ggcgtattcg gtgcatcgtc ttctaatatg gaaatgtcct gggtgtttgg aacgatccaa     15180
     tcatcatcaa ggtcgatatt tgagggttct ggatagtccc atgtgggtgt gattatatta     15240
     taaaatgatg tgaaagaaat atttttcaca tcatcaaata attcctcaag agttttagct     15300
     ccgagatttg acagtgggaa aagatcatca ctcgattgac tgtcttcaaa tattacactg     15360
     atttgactca tggtttttta tacttttttt ttttgctgtt ttagggttta gttcaataac     15420
     ctgcttgggc tgttaaattt agactaacca ttggagtcct aaaataatca ttgacaccca     15480
     tcgatcctcg aaaactgaaa acaggttgtg acacttgaaa acaaccccta attttccaga     15540
     tcaaagaatt gagtaaacca atcaaaagac ctgggagcca tgaaagacag gataggaaga     15600
     agtgaagaga aggaaacaag atgctttgat ttttatatat ttgtgattat tttattcaat     15660
     attttcatat attcatttat taaataacga catattcata atgacgtatt cctcaacccg     15720
     ggaatcagat gaacatgaag tacgccgagg tttcgtagtc ctgaagattt ctatgtcatc     15780
     atcttcatca tacaactcct catctgaatg tatgtcaaga tcacataatc tgtaataata     15840
     atgtttcttg tcccggatgg gtataccaac acacccctca taatgactaa aaaatttttc     15900
     cagagagtaa ttgatgttgc ataaatcgca ggttacttgt ggatccatat tcgagacaaa     15960
     attttacgta taaaatgttc taaccggcaa agcgagattt agactaaaaa ttgtatctct     16020
     aaaataatca tagaaaccta ttcatccata aaaatgagaa caggttcttg tgtttgaatg     16080
     tattgaagcc atgaatggaa acacctgaaa accacccccc aatttccaca agtcaattaa     16140
     ttgggaaaac caatcagaag actcgaaaca cgagatagtg cttagagcct gacgcctcca     16200
     gtagggagta aacaggcgat cggctaattt cgggcacgcg tgtgtgtgtg tgtttgtgtg     16260
     tgcgtgggat cctatacaca taaccaaaca aatatacatt tatatatatt cccatgccag     16320
     caggcatctc ctgtcctttc ttgaggcctt gtcataaatt ttccacctga gtgtaactga     16380
     taaaaaaggg ccgcatcagg tcgatcgttg ttccgaggtt ttttgttgac ccttcaggtt     16440
     taacggaatt tcactttctt ttgacaattt tttccttttg atacttgttt caacccttgt     16500
     acaattttat attagaaatt aaatttcttc gtataactca aaaaataatt tttaaatatt     16560
     tcaatggtct tggattgaaa aatcatttaa aatgatatgc aataacatat tgtttagttt     16620
     tcataattat tttttcctta tgttgcacaa atgatcatag tgatttggtt ggatatattt     16680
     ttcttaatca atttatttat tttttcacac acctaatttg tctcataggt tgcccaagtg     16740
     accaaatgat catggtgaat tgggtgaata tattttttcc taatcaattt catttagttt     16800
     ttcacaaacc ttatttgtgt cataggtggc gcaaatgatc aattgaattg gtagggactt     16860
     aggcaaacgg cgtaaaatcg ggggggaaaa attaaaaaaa gtgtatacag gcaaactaat     16920
     ggtagggctt tccagttttt ttctacatgt atttatattt gagaacgcta gcactctttg     16980
     acagatcatt ttactcgaca caagttttct acatgatcct gtcaaatttc akgactagcc     17040
     gatcttttta catgtcaata tttacatgta aatggcgcta gtaaattcac cacattttma     17100
     tttgacatgt agatggcgct agtaaattca ccacatttta catttgacmc ataggtggcg     17160
     ctagtaaatc kgstsmgtac gccgtttgcc tgtatwcccw ttttckaatt tttccccccc     17220
     gattttacgc cgtttgccta agtccctacc aattcaattg atcatttgcg ccacwawgac     17280
     wcamatwagg tttgtgaaaa actaaatgaa attgatcagg gaaaaatata ttcacccaat     17340
     tcaccatgat catttggtcm cttgggcaac ctatgagaca aactaggtgt gtgaaaaaat     17400
     aaatkaaatt gattaagaaa aatatatcca accaaatcac tatgatcatt tgtgcaacat     17460
     aaggaaaaaa taattatgaa aactaaakaa tatgttattg catatcattt taaatgattt     17520
     ttcaatccaa gaccattgaa atatttaaaa attatttttt gagttatacg aagaaattta     17580
     atttctaata taaaattgtm caagggttga aacaagtatc aaaaggaaaa aattgtcaaa     17640
     agaaagtgaa attccgttaa acctgaaggg tcaacaaaaa acctcggaac aacgatcgac     17700
     ctgatgcggc ccttttttat cagwtacact caggtggaaa atttatkaca aggcctcaag     17760
     aaaggacagg agatgcctgc tggcatggga atatatataa atgtatattt gtttggttat     17820
     gtgtatagga tcccacgcac acacaaacac acacacacac gcgtgcmcga aattagccga     17880
     tcgcctgttt actccctact                                                 17900
//
ID   Polinton-1_DAzt repbase;    DNA;    INV; 16878 BP.
XX
AC   .
XX
DT   08-OCT-2019 (Rel. 25.03, Created)
DT   08-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila azteca genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-16878
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 590-590 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 6-bp TSDs. ~2000-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           2156..3817
FT                 /product="Polinton-1_DAzt_1p"
FT                 /translation="MASSVLCDLCNKLVNVKEFEFHYERCSSTPNSIVCDL
FT                 CSKSVDFGQFDSHYKKCLGPRNAFEVLMSRDTTSSDYQGPSTSAASKRPRM
FT                 EPSIGFGNIKCAICDESYPPSRELRHIISEKHKNAIAAQLEANENVILIST
FT                 ESRFPLKSYRIHSNKSDKIDLKDFYMDCKNDIVNLLRHCMSEYKSIKYNLK
FT                 VYGLYVKQIEDETLMETMKHFITSYQAIYEIDSIEEHLNDALENLINLSSE
FT                 FQEKDSGWGIKKFKYFELTMIKLEHIAANRFIPAPKTIKLRNAIINVKNED
FT                 DFCFKWCVLSSLAYKKHINTTFPTATMKKLARERLTTPSYYQCNIRQDVIY
FT                 YEGVRLDFSGIEFPITNKGVKRFEQANNDISINIYEIDNNGKNVVGPTVRS
FT                 PKIRSQHINILGINSDSMSMMHYAYITCMRKLCYSQHSKSHNAAYFCENCL
FT                 QFYSTSNTIHDTKECGKVAALYPEPKSKTIFKSFPKKLSPPVVIYADIEAV
FT                 LENFSRNLNDPSKSSTTTAQRHIACAASFYVVHKYEPVRNEMWTYEGKYYS
FT                 TLKVINS"
FT   CDS           11459..12748
FT                 /product="Polinton-1_DAzt_9p"
FT                 /translation="MTTHVECMKSELDLFEPHPTQSSILRTEEVAYNPIAS
FT                 LDSASSIEFVCLGNGETYRDLSSVYLRLVVQLRKNDNTNIEGNDVGVVNNI
FT                 LHSIFRSSSVYLNNILVSQSDNNYHYRSYLQTILNYGSDATESHLATQGYY
FT                 PNYGKLLSGRYVNTDGSIILKNIFQKSNKVELYGKVHGDIFNQSKLLINNV
FT                 DLRITFNIEKTAFYLMESETESNLKILEAQLFMNHITVNPSILLAHHHVLQ
FT                 TKNAIYPYSKVQVKSFTIYPGNNTLSIDNAVIGQLPNFLAFCMVKNKSYSG
FT                 NRTMDPFNFNHFKIQRFNLLVNGVQVPSQALEFDFTDSENVQSSRGYNMLF
FT                 RSSGIKHYDRGLQITKEMFDKNCFILAFDLTADHHNSTVCSNLISQGAIRI
FT                 EGRFSEPLTEAVTCLVYCEYDSMIDIDKHRNIRVLL"
FT   CDS           10394..10942
FT                 /product="Polinton-1_DAzt_8p"
FT                 /translation="MVYLTEFFATLLSNDSLNVFHDNVKCAFTNIVNIPEN
FT                 MNDEWEVGITDLYLNKCIKTMPENASIVTEETTEFVISLVNGETFRYANES
FT                 XESDPFENGLIFVYTDIIKPRCVGSKRPRCLRVLHYNGKEQLIQFKNIEYY
FT                 PIEIWSPKEISILITDSKGYKVPFESSATPIFVTLHFRKRKEML"
FT   CDS           8724..9407
FT                 /product="Polinton-1_DAzt_6p"
FT                 /note="ATPase."
FT                 /translation="MFKQFIHPFTMLICGPSGSGKTTFLENLINQRNDLIS
FT                 ISIDRILWCYGEEHAKPNFNNIEYYKGVPEKIENENNEPILLILDDLMMGA
FT                 FNKNVCELFTKGSHHRNLSVIVVTQNIFHKSSHTRDISLNTKYIVAFKNPR
FT                 DKLQFQCLARQIYPENSRELFRIYKEVTDEPHGYLLIDLTQGINDLLRFRT
FT                 DIFNSVYTVCFADENGLQKESKSAESEQTFIVCAQKGK"
FT   CDS           7168..6248
FT                 /product="Polinton-1_DAzt_3p"
FT                 /note="integrase."
FT                 /translation="MSKQQVVNEIHKPARKNFIRRKFVQKGINDTWQIDLV
FT                 EMIPYYKENKGFRYLLTVIDTFSKYAYAVPVKSKTSLDVSSAMKRIFKISR
FT                 YKPKNIQSDQGKEFFNITFGEVMQLNNINHYHTYTHLKASICERFNRTLKC
FT                 RMWKMFSMQGNHVWIHNLQDLVNDYNNSYHRTIKMKPIDVNRQNEEFILKT
FT                 AYNICKVFPQHKFSIGEPVRISKYKGIFTKGYEPNWTTEVFKIVKVKSTNP
FT                 VTYELEDYQGHIIKGSFYDQELQKVKDENAFLVEKIIRRKKDKVFVKWLGF
FT                 DETHNSWIDNKCLLK"
FT   CDS           7861..7187
FT                 /product="Polinton-1_DAzt_4p"
FT                 /translation="MDTLQSKRIRSTRKKQDHEVIFGLEYYVVHNLKLKCG
FT                 FSTTRKFTPMIWMQQSKNNFVGLDKDEWMQLITYKEYIQLKLDQYEFLMPD
FT                 TIIDHPLLPTIKCNFRFRKSDKQYVFIINQFGNKIEFDSESWRSLLRLGIF
FT                 FTTFLCWNTILKQQITFLYYNNIIPKCAALQKFDVQLSDLDGTYDRNVQID
FT                 LTRLCFEISKKMCIQIKRDVLEYKQSLLNKQSSKK"
FT   CDS           9677..10360
FT                 /product="Polinton-1_DAzt_7p"
FT                 /translation="MLKSKHQLNKVILMHPNAYQKLLNSEKENDLINITFL
FT                 PILNDKKTSDFNKWIKIRQELCYYQNKKRNKTMDLRARQQTPLSSPKSIGI
FT                 QTPEESVWIDSKPNTTNHYNKNNDSSKNERSIDSDFPALPIDSDDEDLKFE
FT                 KSVSSKNNKRKAEDTSFVDTHASKKQAVTKVKLTDKQKKLRVQLKRYKSET
FT                 HPFQDLKYVSGREKLSRSVRNRNTVQIGKNKINWLSYN"
FT   CDS           7970..8482
FT                 /product="Polinton-1_DAzt_5p"
FT                 /translation="MNTIDRNSSVIVDFQYLFGNNKQLFIKELAFMQAGTV
FT                 TPNFFHFKPPYHLNELDNEMIKQQNIHRQTINGLEWADGEISYLSLGEILS
FT                 PLNRFSTVIVRGEIKKKFLSKYLTNNIIDIDIGKSLALYPNFFTNCRIHKK
FT                 IPLRCALNNLFKLFVILENSNYDVYCNGDSYV"
FT   CDS           4320..6140
FT                 /product="Polinton-1_DAzt_2p"
FT                 /note="DNA polymerase B."
FT                 /translation="MDRSNFKNLKSKYQDEKFDMLRRKGVFPYDYLDSFQK
FT                 FEETQLPSREHFFNSLNDEECSVDNYNFAQKVWRTFSCNSIRDYLKLYLES
FT                 DVLILADVFENFRDLCSGVYRLDPINYVTAPSVSWDAMLKYTKVELELISD
FT                 PDIYNFLKSAVRGGLTQCTQRIATANNKYLNSKFRSSEPINYLAYIDANNL
FT                 YGWAMSQPLPYSNFKFLTKEEILSFSATNILACGDVGYILEVDLKYPNEIH
FT                 NKHNSLPLCPENKIPPGGKQTKLIADLSDKKNYIIHLKQLQLCIEQGMILE
FT                 KISRILSFKQSSWLKPYIDLNTSRRKKAKNEFEINFFKLMVNAVYGKTMEN
FT                 VEKRREVALVKHYQSRQNSAGFRQRIARHNFHSVEIFADNLAAIEETKTKI
FT                 FYDKPIYIGVSVLELSKWLMYDYFYNFHSIKCPSSKILYMDTDSFIISSEE
FT                 DFYDLIKNNPSRFDTSNYQESNRFGISCANNKELGLMKDENAGRIMTSFAG
FT                 LKAKAYSYLVAKDDRTDFNIKKVKGVKKSVVKRLSHEHYIECIKHKKTYYG
FT                 EQRVIRSRGHKIYTEIVNKISLNYKDDKRFILPNNISTLAHNHYEIKNILD
FT                 TINHTQNVI"
FT   CDS           12753..13208
FT                 /product="Polinton-1_DAzt_10p"
FT                 /note="adenovirus endoprotease."
FT                 /translation="MNTLQIEHLLSKHSKTRKIFKGVYSSDKLPKVISKYP
FT                 AFIIANTDSSSQPGTHWVAFYFNSKHSAEFFDSYGQYPQKKEFVKLLRNNS
FT                 IKFTFNKQPLQGYFSNTCGHYCILYGIFKSKQKTLNCFLKQFKKNDFNYND
FT                 KLIMKMFKKICLK"
XX
SQ   Sequence 16878 BP; 6010 A; 2623 C; 2740 G; 5503 T; 2 other;
     agtagctatt atataggcta tcaactatag gacagtgata gatatacaaa aaacaaacag        60
     aaagtgaaaa aggattcaac gacattgagt tccttttaca agaaatacat taaaaaacga       120
     cttctaaact attaccaaaa aactacctgt aaactattac caaaaaacta cctgtaaact       180
     attaccagat tcatttcaaa gggatgaaac acctgtttga gggttgtttg aatcgttaca       240
     tgaacccaat ctagaaaacc ggttcataga aaaccggtcc atcgtaaata tgagggagga       300
     gcaagagaga gagtataagt gagaggatct agatctattt ttagacgagg atcgagatct       360
     atttttagac acgagtgaaa gttgtcttgg attaaagtta gttcacattt tcgccgatag       420
     ggggcgccac ccaagtagta atgatatagg gtcccggcat aacggcgaaa gtggcgccat       480
     ccggtaatga gtggcggacc taacatagag ggggggctgt cgacttttga catgaaaatt       540
     ctacattcta cattctacat tctaacatga tcatgttaag tgaggggaat aatgttacta       600
     acttgatcat gttaaaatac ccaaaggata tattttaatt ttaacaggat catgttaaaa       660
     tacctatagg ataattttat ttacattgta ttatgaaaat aaatgtttta agaagaaagt       720
     atttatgggt acaatgtttt cagatgtccg taaagagatt tgagcagaca ttaagagtga       780
     aacwtatata gacaggatga tcaaatagta aaagacgccg ggaccctata tcattactac       840
     ttgggtggcg ccccctatcg gcgaaaatgt gaactaactt taatccaaga caactttcac       900
     tcgtgtctaa aaatagatct cgatcctcgt ctaaaaatag atctagatcc tctcacttat       960
     actctctctc ttgctcctcc ctcatattta cgatggaccg gttttctatg aaccggtttt      1020
     ctagattggg ttcatgtaac gattcaaaca accctcaaac aggtgtttca tccctttgaa      1080
     atgaatctgg taatagttta caggtagttt tttggtaata gtttacaggt agttttttgg      1140
     taatagttta gaagtcgttt tttaatgtat ttcttgtaaa aggaactcaa tgtcgttgaa      1200
     tcctttttca ctttctgttt gttttttgta tatctatcac tgtcctatag ttgatagcct      1260
     atataatagc tacttacagc tataagctat aataaaatct agtgagctgt gaacaaagat      1320
     ggacgacctt gaggttattt ttgtaaattc tcaaccggaa tcacccataa atcttgagtc      1380
     tcagtcagac tccgtggacc tctccttaat tttcgggatt aggactcaaa actctttgga      1440
     gagacagctc gagaatttaa atgctatgta tgatatacaa tgggatgatg atgattcctt      1500
     aattgcaatg tcgaatcctc attcatcata cgttttcccg gatgatgacg acatttttga      1560
     tttggttgat gaaaggcctc gcttccagga actacttcgg gatgaagatg acgatgaatt      1620
     aatagctgcg gtggaaagag ctgaggctga attttaatat tacgattcta gttataatac      1680
     aaatatttta tgtatttttc taaaaataat aaataaaata ctacatttat ccaatatata      1740
     ttttcaatgg tttctttttt acttttgatt ggttgaattt cgcttcctct tattacacgt      1800
     tacatccccc caaagagaat taggggattc gtttaaaact ggttttcaag ttaggattac      1860
     atgttacatc ccccaaagag aatcagaggg ttcgtttgaa actggtttcc aagttaggat      1920
     tacacaaaaa gaataagtgg atttcaggta gaatacaggt acaggtgtat ttattggttc      1980
     aatttcatat tctattaacc cctagttttt gtaggaatcg atgaaacagg ttttttgtat      2040
     acaaaatacc aggtaggagt tttgttgata aatagagtgt catttagcaa aaaaccctta      2100
     gtactattcc tatagtgaaa gtgaatagag atttaaaaca accttaaaac ttaaaatggc      2160
     atctagcgtg ttgtgtgacc tgtgtaacaa gttagtaaat gtaaaggagt ttgaattcca      2220
     ttatgagaga tgctcgagca ctccaaattc tatagtgtgt gacctgtgtt ctaagtccgt      2280
     cgatttcgga caatttgact ctcattataa gaaatgcttg ggtcctcgaa atgcatttga      2340
     ggttcttatg agcagagata ctacctcaag tgattaccaa ggaccatcaa cgtcagcagc      2400
     ctcaaaacgt ccgagaatgg aaccttcgat tggatttgga aatattaaat gtgcaatttg      2460
     cgatgaaagt tatccaccgt ctagagaatt gcgccacata atctcagaaa agcataagaa      2520
     tgcaatagca gcgcaactag aggcaaatga aaacgtcatt ttaatttcaa ctgagtcacg      2580
     gtttccccta aaatcatatc ggattcactc taataaaagt gataagatcg atttgaaaga      2640
     tttttacatg gattgtaaaa atgacatagt aaacctattg cgtcactgta tgagtgagta      2700
     caaatccatt aagtacaatt taaaagtata cggattgtat gttaagcaaa ttgaggacga      2760
     aaccttgatg gaaacaatga agcatttcat aacttcatac caggcaatat atgaaattga      2820
     ttcaattgaa gaacacttaa atgatgccct tgaaaactta attaatttga gtagtgaatt      2880
     ccaggagaag gattcaggtt ggggtataaa aaaatttaaa tattttgagc taacgatgat      2940
     taaattggaa catattgctg ctaatagatt cataccagca cccaaaacaa ttaaattgcg      3000
     aaatgcaatc atcaatgtaa aaaatgaaga tgatttttgt tttaagtggt gtgttctatc      3060
     ttcattagca tataaaaagc atataaacac tacatttcca acggccacaa tgaaaaaatt      3120
     agctcgagaa agattgacga caccatcata ctatcagtgt aacataaggc aagacgtcat      3180
     ttattatgaa ggcgttagat tggatttttc tggaatagaa tttccaataa caaacaaagg      3240
     agtcaaacga tttgagcaag ctaataatga tattagcatt aatatttacg aaattgacaa      3300
     caatggaaaa aacgttgtag gacccacagt gaggagtcca aaaattcggt ctcaacacat      3360
     aaacatacta ggcattaata gtgacagtat gtcaatgatg cattatgcct atataacgtg      3420
     catgagaaag ttatgctatt cacaacacag caaatcacac aatgcagcat acttttgcga      3480
     aaattgtttg caattttact caacctcaaa tactatccat gacactaagg agtgtggaaa      3540
     agttgctgct ttatatccag aacctaaaag caaaactata tttaaaagtt ttccaaaaaa      3600
     actatcaccg ccagtagtaa tttatgcaga catcgaggct gttttggaaa attttagtag      3660
     aaatctaaat gatccatcga aatcatcgac aactacagcg cagaggcata tagcatgtgc      3720
     agcatcattt tatgttgtac ataaatacga acctgttcga aatgagatgt ggacatatga      3780
     aggtaaatat tatagcactc taaaggtaat aaattcttaa tcataacgtt tttgttacag      3840
     gagaaaattg catcgaacaa ttttgccaac agcttcgggc taaaacagac aaactttatg      3900
     agaagtactg gaaatcttgt aaaaaaccca tttacaagtt cgatatttgg gatgaggact      3960
     ctcaggaaca cgacaattgc tatgcctgcg aggaaccaat tctggatgac gttcgtgaaa      4020
     aatatttcaa ccaattctca ggacagtatg ttggtccaat acataaggtg tgtaagcaaa      4080
     catttagatt aagcgatccc tttttcccgg tagtgtttca taacttgtct cgttatgata      4140
     tacatttatt tgtaacatcc ataaaagatg atataaagcc cattccttgc aataaagagt      4200
     tatatattgc gttaactcaa acatgtaaag taggacccct ttatcaacat caatacaaaa      4260
     taagatatat agattcaaat agatttttaa actcaagctt agaaaaacta gctagttata      4320
     tggatagatc caattttaaa aatttgaaaa gtaaatatca agatgaaaaa tttgatatgc      4380
     tacgacgaaa aggagtgttt ccttatgatt atttagatag ttttcaaaaa tttgaggaaa      4440
     ctcagcttcc ttcgagagaa cattttttta attctctaaa tgatgaggaa tgcagtgttg      4500
     ataactataa ctttgctcag aaggtttgga gaacgtttag ttgtaatagt attagagatt      4560
     acttaaaatt atatctggaa agcgatgttc taattcttgc tgatgtattt gaaaatttta      4620
     gggatctttg ctcaggagta tacagattag accctataaa ttacgtaact gctccttcag      4680
     tttcatggga tgctatgctt aaatacacaa aggtagaatt ggaacttata agtgatcctg      4740
     atatttataa ttttttaaaa agtgcagttc gaggagggtt gacccaatgt acccaacgca      4800
     tagcaacagc caacaataaa tatttaaata gcaaatttag gtctagcgag cctataaact      4860
     atctagcgta tattgacgcc aacaatttat atgggtgggc tatgagtcag cccctaccgt      4920
     attctaattt taaattttta actaaggagg aaattttatc attcagcgct acaaatatat      4980
     tggcatgcgg ggatgtagga tacatcttag aagtagattt aaaatatcct aatgaaattc      5040
     ataataaaca taatagttta ccattatgtc ctgaaaataa aattccacct ggaggaaagc      5100
     agacaaaatt aatagcagat ttatcggaca aaaaaaatta tataatacat ctgaaacaac      5160
     tgcagttatg tatagagcaa gggatgattt tagaaaaaat atctcgaata ttatctttta      5220
     agcagtccag ttggctaaaa ccttatattg acctaaatac atcacgtagg aaaaaggcaa      5280
     agaatgagtt cgagattaac ttttttaaat taatggtaaa tgccgtatat ggaaaaacga      5340
     tggaaaatgt agaaaagcgt cgggaggttg cgttagtaaa acactatcag tcaagacaga      5400
     attcagcagg gtttagacaa cgaatagcta gacataattt ccacagtgtt gaaatctttg      5460
     cagataattt agctgcaatt gaggaaacta aaacaaaaat tttttatgat aaacccatat      5520
     acataggagt tagtgtatta gaactgtcaa aatggctaat gtatgactac ttctataatt      5580
     ttcattcaat aaaatgtcca tcgtcaaaaa tactctatat ggatacagat tcatttatta      5640
     tctcatcaga agaagatttt tatgatttaa taaaaaacaa tcctagtcgc tttgatacat      5700
     caaattatca agagtcaaac agatttggta taagttgcgc taataacaaa gaactagggt      5760
     taatgaaaga cgaaaatgca ggtcgaataa tgacctcgtt tgcagggtta aaagcgaaag      5820
     catactcata tttagtagca aaagatgata gaactgactt caacattaaa aaggttaaag      5880
     gagtaaaaaa gtcagtagta aagagattat cgcatgaaca ttatattgaa tgtattaaac      5940
     ataagaaaac gtattatgga gaacagagag ttataagaag tagaggacat aaaatttata      6000
     ctgaaattgt aaataaaata agtttaaact ataaggatga taaaagattt atattaccta      6060
     ataatatctc aacattagct cataatcact atgaaattaa aaacatttta gatacaatta      6120
     atcatacaca aaatgttata taaataagca taatattata tatttagaaa tattatataa      6180
     ttaaaactat attgtaaatg ctaaaaaata aaaaaattaa tgtgataaac tattttttgt      6240
     ttaattattt taataaacac ttgttatcta tccatgaatt gtgtgtttca tcaaacccca      6300
     accatttaac aaaaacttta tccttttttc ttcggattat tttctccact aaaaaagcat      6360
     tttcatcttt cactttttgg agttcttgat cataaaatga tcctttaata atatgcccct      6420
     gatagtcctc cagttcatat gttacaggat tagttgactt tacttttaca attttaaaaa      6480
     cttcagttgt ccagttaggt tcatatccct ttgtaaaaat acctttatat ttacttattc      6540
     ttacaggctc acctatagaa aacttgtgtt gagggaatac cttacaaata ttataagctg      6600
     tttttaaaat aaactcttca ttttgtctgt ttacatctat aggtttcatt tttatggttc      6660
     ggtgatatga attattgtaa tcatttacta agtcttgtaa attatgaatc cagacatgat      6720
     taccctgcat actaaacatt ttccacatac gacattttaa cgttctatta aaacgttcac      6780
     aaatagaagc cttaagatgt gtatatgtat ggtaatggtt tatattatta agttgcatta      6840
     cctctccaaa ggtaatattg aaaaactcct ttccttgatc agattgaata tttttaggtt      6900
     tatatctaga tattttaaat attcgtttca ttgctgatga gacatctaaa gatgtcttag      6960
     acttcacagg aactgcatat gcatacttgg aaaacgtgtc aatcactgtt agcaaatatc      7020
     taaatccttt attttcttta taatagggta tcatttcaac taagtctatt tgccacgtgt      7080
     cattaattcc cttttgaacg aattttcgtc gaataaagtt ttttctagca ggtttatgta      7140
     tttcattaac aacttgttgc ttactcattt ttaatattat tttttatttt ttggatgatt      7200
     gcttatttaa aagtgattgc ttatattcaa gaacatcgcg ttttatttga atacacattt      7260
     tttttgaaat ttcaaagcat aaacgagtta agtctatttg cacatttcta tcataggtac      7320
     cgtctaaatc tgatagttga acatcaaatt tttgtaaggc tgcgcactta ggaataatat      7380
     tgttataata aaggaatgta atttgttgct taagtatcgt attccaacat aaaaatgtgg      7440
     taaaaaaaat tcctaatctt aacagtgatc tccaggactc gctatcaaat tcaattttgt      7500
     ttccaaactg atttattata aaaacatact gcttatcaga tttccgaaat ctaaaattac      7560
     atttaatagt aggcagtaat ggatggtcta taattgtatc aggcatcaag aattcgtact      7620
     gatcaagttt taattgaata tattccttgt atgtaattaa ttgcatccat tcatctttat      7680
     ctaaaccaac gaaattattt ttgctttgct gcatccagat cattggagtg aattttcttg      7740
     tagttgaaaa cccgcatttt agttttagat tatgtactac ataatattcg agtccgaaaa      7800
     taacttcgtg gtcctgtttc tttctggtag atcgaattct ctttgattga agcgtgtcca      7860
     ttagggttga atgcttttta taaactaaga actctgaatg aattgggctg tatataaagg      7920
     agatagatat cgatgactta ttcagtttct ttataaatct caaaccaaca tgaacacaat      7980
     cgacagaaat tcaagcgtta tagttgattt tcaatatctc ttcggaaata ataaacaact      8040
     ttttattaag gaactagcgt ttatgcaagc cggcacagta acaccaaact tcttccattt      8100
     caaacctcca tatcatctaa atgaattgga caatgaaatg attaaacaac aaaacattca      8160
     tcgtcaaacc ataaatggac tggaatgggc cgatggtgaa atatcatatt taagtttagg      8220
     ggaaattctt tcaccactta acaggtttag caccgtcatt gttcgtggtg aaattaagaa      8280
     aaagttctta tcaaagtatt taacaaataa cattattgat atcgatattg gaaaaagtct      8340
     agctctttat ccgaattttt ttactaactg tagaatccac aaaaaaattc ctcttagatg      8400
     tgctttaaat aatttattta agctttttgt tatattggaa aattcgaact acgatgtata      8460
     ctgtaatggt gactcatacg tttagcttat cagtttgtat taaacacttg tattaactag      8520
     ttgtttaaaa tggatacctt taagcgtttg tttgaaaatg atcctcgcaa aagaggatac      8580
     acacaagtcg tttattgcaa ttattgtgga tctgatactc atttcgaaaa ggactgtcac      8640
     aaaaaacgcg accaggagaa acctaaataa attattttaa gtggtagaaa acatttataa      8700
     atgatctata aataaaacct aaaatgttta aacaatttat tcatcctttt acaatgctaa      8760
     tttgtggacc ttcagggtct ggaaaaacaa cgtttttaga aaatttaata aaccaaagga      8820
     atgacttgat aagcatttca attgatcgaa tactttggtg ttatggagag gagcatgcta      8880
     aaccaaattt caacaacatt gaatactata aaggagttcc cgaaaaaatt gaaaatgaaa      8940
     ataatgaacc tattctttta atactagatg acttgatgat gggtgcattt aataaaaatg      9000
     tatgtgaact atttacgaaa ggttcacatc ataggaattt atctgtaata gtagttacac      9060
     aaaatatatt tcataaatca tctcatactc gggatatttc actaaataca aaatacatcg      9120
     tggcgttcaa aaaccctaga gataaactgc agtttcaatg cctagctaga caaatatatc      9180
     ctgaaaattc tcgggaactc ttcagaatat ataaggaggt tactgatgaa cctcatggtt      9240
     atttacttat tgatcttact caaggaataa atgatctcct tagatttcga acagatattt      9300
     ttaattctgt gtatacagtt tgctttgcag atgaaaatgg tttacaaaaa gaatctaaat      9360
     cggctgagag cgaacaaaca tttattgtat gtgctcaaaa gggcaaataa taaacttcga      9420
     aatgcaataa taagtaattg tgatattgag ttggtaaaag cattagtgga gatagtgtta      9480
     aatacattac aaggaaatca taagatatca aaagcgcaac tatatgctct taaaaagtat      9540
     aaaaatacat tacgttttat ttcatgttca aaaaggtcaa taaactccaa gcgaaaagtt      9600
     ctcatccaaa aaggtggatt tttaccaatt ctaataagtt cattgctttc ggggattttt      9660
     ggaaaaattt tgaacaatgc ttaaaagtaa gcatcaatta aacaaagtca ttttaatgca      9720
     tcctaatgca tatcaaaaat tgctaaatag tgaaaaggaa aacgatttaa ttaatataac      9780
     atttttacct attttaaatg ataaaaaaac tagtgacttt aataaatgga taaaaattcg      9840
     tcaagaattg tgttactatc aaaataaaaa aagaaataag acaatggact tacgagctag      9900
     acagcaaact ccactttcat cacccaaaag cattggaata caaacgcccg aagagtcagt      9960
     ttggatagat tctaagccca acacaactaa tcactacaat aaaaataatg attcttcaaa     10020
     aaatgaacgc tctatcgaca gtgactttcc tgctctacct attgacagtg atgatgagga     10080
     tttgaagttc gaaaaatctg ttagttcaaa gaataataaa cgtaaagctg aggatacttc     10140
     atttgtagac actcacgcat caaaaaaaca agcggtgact aaggttaagc ttactgataa     10200
     gcaaaaaaaa ctaagagtac aacttaaaag gtataaaagt gaaactcatc catttcaaga     10260
     cttaaaatac gtaagtggac gagaaaagtt gagtagatct gttagaaaca gaaacaccgt     10320
     tcaaattgga aaaaacaaaa ttaattggct ttcgtataat taataaacta aaaagaaaat     10380
     tttacattga aaaatggtat atttaacaga gtttttcgct acattactca gtaacgattc     10440
     gttaaatgta tttcatgata acgttaaatg tgcatttaca aacatagtga atattcctga     10500
     aaacatgaac gatgaatggg aagtaggaat tacagactta tatctaaata aatgtataaa     10560
     aactatgcct gagaacgcct ctattgtaac tgaagaaacg acagaattcg tgattagctt     10620
     agtaaatggg gaaacattta gatatgcaaa tgaatcagwg gagtctgacc cctttgaaaa     10680
     cgggttgatt tttgtttaca ccgacattat caaaccaaga tgtgttggaa gcaaaagacc     10740
     tagatgtctt cgagtattac attataatgg aaaggagcaa cttatacaat tcaaaaatat     10800
     tgaatactat cccattgaaa tatggtcacc aaaagaaatt tcaattttaa ttaccgattc     10860
     gaaaggctat aaagtaccat ttgaatcttc agcaactcca atttttgtta ctcttcattt     10920
     tagaaaacga aaagaaatgc tataaataat actgtaaagc taaacatttc ttcagagtat     10980
     aaatagccat catgacgaaa tcttatcaac aatattattt aaatcagtgt ggaggaggtt     11040
     taagtcatat aggaagtcta tatgttacac ccagagttat ccagcaaggt agaggaattg     11100
     gaaatttttt tagtggtctt tttaactaca taaaaccatt attcctttcg gggataaacg     11160
     caattaaaaa tcaagcttct gagactggaa aggctgtaat aaatgagttt ggtcgtaaac     11220
     ctctaagaaa cattatccaa gaacaaagca aaattgcatt gcaaaatctg tctaataaag     11280
     ctattaataa atttacgcga ttccaaaatg gagaaggtaa aaagaataaa aagagaaggt     11340
     ctaggaaaaa acaatctcat ttatcatcta aacaaggacg caaacatacg cactcgagac     11400
     caaaaaggac aaaatcaata aagaaattaa ctattagaga cattttctca aaatcaaaat     11460
     gactacccat gttgaatgta tgaaaagcga gctggatctg tttgagcctc atcctacaca     11520
     aagttctatt ctaaggactg aagaagttgc atacaacccc attgcttcgt tggacagtgc     11580
     ctcttcaatt gaattcgttt gcttaggaaa tggtgaaaca tatcgagacc tatcaagtgt     11640
     ttacttaaga cttgttgtac aactaagaaa aaatgataat accaacattg aaggaaacga     11700
     tgttggagta gtgaataata ttttgcattc aatctttaga agttcgtcgg tatatttaaa     11760
     taatatattg gtttctcaga gtgataataa ctaccattat agatcgtact tgcaaacgat     11820
     tttaaactat ggtagtgacg ccactgaaag tcacctagcc actcaaggtt attatcccaa     11880
     ttatggtaaa ttattatctg gaagatatgt taataccgat ggatccatta tactcaaaaa     11940
     tatttttcaa aaaagtaata aggttgaact atacggaaaa gttcatggag atatatttaa     12000
     tcaatcaaaa ctgcttataa ataatgttga tttgagaatt acttttaata ttgaaaaaac     12060
     agcattttat ttaatggaat ctgaaactga atcaaatctt aagatattgg aagcacaact     12120
     attcatgaac cacataactg ttaatccaag cattttattg gctcatcatc atgttttaca     12180
     aactaaaaat gccatttatc catacagtaa agttcaagta aaatcattta caatataccc     12240
     tggaaataat acattatcaa ttgataacgc agtaattgga cagcttccta attttttggc     12300
     tttttgcatg gtaaaaaata aatcatattc tggaaatcga acaatggatc cttttaattt     12360
     taatcatttt aaaattcaac gctttaatct attggttaat ggagtgcaag taccatctca     12420
     ggctcttgag tttgatttca cggactctga aaatgttcaa agctctagag gatataatat     12480
     gctattcaga tcaagtggaa taaagcatta tgatcgaggt ttacaaatta caaaggaaat     12540
     gtttgataaa aattgtttta tattagcatt tgacttaact gcagatcatc acaattcaac     12600
     tgtatgctca aatttgattt cacaaggagc tatcagaatt gaaggacggt tttctgaacc     12660
     tcttaccgaa gcagttactt gtctggtgta ctgtgaatat gactcaatga ttgatattga     12720
     taaacatcga aatattcgtg ttctattgta aaatgaatac attgcaaatc gaacatttgc     12780
     tttctaagca ttcaaaaaca cgaaaaattt ttaaaggagt ttattcctct gataagctac     12840
     ctaaagtcat ttcgaaatat cctgctttta taatagctaa tacggattct tcaagtcaac     12900
     caggaactca ttgggttgca ttttacttta atagcaaaca ttcagcagaa ttttttgatt     12960
     catatggtca atatcctcag aagaaagaat ttgtaaaatt attaaggaat aattcgatta     13020
     agtttacatt taacaaacaa ccactgcaag gctatttttc taatacatgt ggtcattact     13080
     gcattttata tggaatcttt aaaagcaaac aaaaaacatt aaattgtttt ttaaaacaat     13140
     ttaagaaaaa tgattttaat tataatgata agttaatcat gaaaatgttt aagaaaattt     13200
     gtttgaaata aaaaaacata ataagttaat catgaaaatg tttaagaaaa tttgtttgaa     13260
     ataaaaaaac ataatattgt tgtaatgtaa atgttatttt attgatttcg gatttattct     13320
     attgtttaag ttataatact tgagcattaa ttctaatgct tgagcttttt tagccggtaa     13380
     agtatgacac agacatgtgt caggtccatc agtagcatcg tcatcgctcc agggacacag     13440
     cttataatgg aacccaaact tggaataatg aagttccttt tcctccagat cctccaaaat     13500
     tgtcattaga ttttccaggg tagtcacatg gtcctcgaag atcatgtctt cgaattgcat     13560
     caaaaaaagt ttgatttgtt ttgcgtacat cttacgactg atgatgttgg tgatgatgtt     13620
     gatactgatg ttggttcaaa gagcaggact ctttatatcc aaaccttttc tcttgtaatc     13680
     atatgtttta tctatgtata ttgtaaatgg tttcttttta catgtgtata cgtatacata     13740
     tgtaatcctt ttgtctttat ttattctgta catggttagt tgtctttttt tctcttacac     13800
     aaatcagatg tattccattg aattctttat ttattcttta catataaatt ggaaatggga     13860
     agtgctatat ctattcatct cttttccttt atatatgaga tgtgaaattc catgatcctt     13920
     caacaacttg aatggtgttt tcgatgaaaa tttggtaaca taacttttag gtaaaaatat     13980
     ccatagttga tcgttgtcct tatcagttaa ataaaggact actttattgc caaatgatgt     14040
     ttttttgagt ttgcatcctg tgatcttgta ctcaaatcct atacatagat cctctacctt     14100
     ggtgtatcca atcgcaggtt ttatctcgtt aagtatctca aggaaagcct aagtacatac     14160
     acattttatt agacgatttt cattttatat aagaaaaaga atagttgttt acataccatt     14220
     ataataatag aaagtgttca aactactcac tgttttagac taaattattt attcaagatt     14280
     acatggtctt ttatacactc attagtacat aattgaaaga taaaaaccaa tagatctaat     14340
     taaataaaag ccaggtgtct taaatctgat tggttgttga ggagaatata tacatatgca     14400
     catatataca tatgtacata tatacttcaa atattatagt gtcactttct gtctatgtgt     14460
     acatagtcaa catgaaaacg ttatataaac agaatgaaat gtataccgtt ttgtagctat     14520
     gatcataacc tgaaatcata tataaggact tcagttcttt agatgattta gtttatattc     14580
     agttcgaaat gagtgcattt cattgcgagt tgtgttttgt aaaaaaatct tttagttctc     14640
     gtaatggact gaaaaaacac accttaaaag tacacaactt tagttattca aaatcgaaat     14700
     catcatttta tcaatgttgc ttatgtcctg gaactaagct gttttggctt agatttgatt     14760
     taaatatgca tattttattg acgcattaca acgaattaag gcaaataaat aaaaattaaa     14820
     tactaagaag taagataatc cagacatttc tttaaatata tatggcttta gatcgaatgt     14880
     accttatata atagaatatg aaattgaacc aataaataca cctgtacctg tattctacct     14940
     gaaatccact tattcttttt gtgtaatcct aacttggaaa ccagtttcaa acgaaccctc     15000
     tgattctctt tgggggatgt aacatgtaat cctaacttga aaaccagttt taaacgaatc     15060
     ccctaattct ctttgggggg atgtaacgtg taataagagg aagcgaaatt caaccaatca     15120
     aaagtaaaaa agaaaccatt gaaaatatat attggataaa tgtagtattt tatttattat     15180
     ttttagaaaa atacataaaa tatttgtatt ataactagaa tcgtaatatt aaaattcagc     15240
     ctcagctctt tccaccgcag ctattaattc atcgtcatct tcatcccgaa gtagttcctg     15300
     gaagcgaggc ctttcatcaa ccaaatcaaa aatgtcgtca tcatccggga aaacgtatga     15360
     tgaatgagga ttcgacattg caattaagga atcatcatca tcccattgta tatcatacat     15420
     agcatttaaa ttctcgagct gtctctccaa agagttttga gtcctaatcc cgaaaattaa     15480
     ggagaggtcc acggagtctg actgagactc aagatttatg ggtgattccg gttgagaatt     15540
     tacaaaaata acctcaaggt cgtccatctt tgttcacagc tcactagatt ttattatagc     15600
     ttatagctgt aagtagctat tatataggct atcaactata ggacagtgat agatatacaa     15660
     aaaacaaaca gaaagtgaaa aaggattcaa cgacattgag ttccttttac aagaaataca     15720
     ttaaaaaacg acttctaaac tattaccaaa aaactacctg taaactatta ccaaaaaact     15780
     acctgtaaac tattaccaga ttcatttcaa agggatgaaa cacctgtttg agggttgttt     15840
     gaatcgttac atgaacccaa tctagaaaac cggttcatag aaaaccggtc catcgtaaat     15900
     atgagggagg agcaagagag agagtataag tgagaggatc tagatctatt tttagacgag     15960
     gatcgagatc tatttttaga cacgagtgaa agttgtcttg gattaaagtt agttcacatt     16020
     ttcgccgata gggggcgcca cccaagtagt aatgatatag ggtcccggcg tcttttacta     16080
     tttgatcatc ctgtctatat atgtttcact cttaatgtct gctcaaatct ctttacggac     16140
     atctgaaaac attgtaccca taaatacttt cttcttaaaa catttatttt cataatacaa     16200
     tgtaaataaa attatcctat aggtatttta acatgatcct gttaaaatta aaatatatcc     16260
     tttgggtatt ttaacatgat caagttagta acattattcc cctcacttaa catgatcatg     16320
     ttagaatgta gaatgtagaa ttttcatgtc aaaagtcgac agccccccct ctatgttagg     16380
     tccgccactc attaccggat ggcgccactt tcgccgttat gccgggaccc tatatcatta     16440
     ctacttgggt ggcgccccct atcggcgaaa atgtgaacta actttaatcc aagacaactt     16500
     tcactcgtgt ctaaaaatag atctcgatcc tcgtctaaaa atagatctag atcctctcac     16560
     ttatactctc tctcttgctc ctccctcata tttacgatgg accggttttc tatgaaccgg     16620
     ttttctagat tgggttcatg taacgattca aacaaccctc aaacaggtgt ttcatccctt     16680
     tgaaatgaat ctggtaatag tttacaggta gttttttggt aatagtttac aggtagtttt     16740
     ttggtaatag tttagaagtc gttttttaat gtatttcttg taaaaggaac tcaatgtcgt     16800
     tgaatccttt ttcactttct gtttgttttt tgtatatcta tcactgtcct atagttgata     16860
     gcctatataa tagctact                                                   16878
//
ID   Polinton-1_DBi repbase;    DNA;    INV; 16949 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   14-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   Polinton DNA transposon from the Drosophila biarmipes genome.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DBi.
XX
NM   Polinton-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-16949
RA   Kojima K.K. and Jurka J.;
RT   "Polinton DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 994-994 (2012).
XX
RN   [2]
RP   1-16949
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (14-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~1790-bp TIRs.
CC   [2]: sequence updated.
XX
SQ   Sequence 16949 BP; 5932 A; 2863 C; 2808 G; 5345 T; 1 other;
     agtagctatt aaaagcggtt gcggaggttt tttaggcggt tttaaatgtg ttttgtatga        60
     gttgttttta attgcaagcg tatactcatc ccagaatcag tgtgtttggt attccacgga       120
     accctccctt tgtattgcat ttcaaatatt gtgacccctc gttatcttct gagaatgagc       180
     aggagaaagt gaacgtgcgt acccacgaac ccgaatctca cccctaccct cgagtccttg       240
     ctcatgactg cttgtgcgcg aaggtgtgaa attttaattt tgtgagtttt tttcaaaatg       300
     tgcagttttt attttagaac agagaaaatt ataccattgg aaagggcttg aaaaatgctt       360
     tccaatgaca ccaaattttt tttttttttt ttttagtgag ggggtatact atttacggta       420
     gcggaggtca tcgtcgtttt ttgccttttt cagtcgagta gtgggaatat acgggagcgg       480
     cggttttcgc agcggaggtt tggtcgctgc cgagactgcc gctgcgatga ccgccgctgc       540
     ggtcttatac tctagttttt cttatatgtt atacgattcc ttttgaggag tgtgtctagg       600
     aaaaatgagc tgaagaatca ctttaatgtt aaagttgtat aagacttata ggatcacttt       660
     ttagggctga ggatatcgaa attgtttttg tctacgataa agttagacgg gtgtgtatag       720
     aaaagtcagc tagtggaatc actttaaggt ttatgtttta aatttcttat tgggaacact       780
     tttcagggtt tatatctaaa ggccacccaa taaaatttat gtgtaggata agaagtttag       840
     ttttaagaat ttcttaaaac ggtgcactga agcggaaaat tgtaccgaat ttcaaattct       900
     gcctcctccc gtatattccc actactcgac tgaaaaaggc aaaaaacgac gatgacctcc       960
     gctaccgtaa atagtatacc ccctcactaa aaaaaaaaaa aaaaaatttg gtgtcattgg      1020
     aaagcatttt tcaagccctt tccaatggta taattttctc tgttctaaaa taaaaactgc      1080
     acattttgaa aaaaactcac aaaattaaaa tttcacacct tcgcgcacaa gcagtcatga      1140
     gcaaggactc gagggtaggg gtgagattcg ggttcgtggg tacgcacgtt cactttctcc      1200
     tgctcattct cagaagataa cgaggggtca caatatttga aatgcaatac aaagggaggg      1260
     ttccgtggaa taccaaacac actgattctg ggatgagtat acgcttgcaa ttaaaaacaa      1320
     ctcatacaaa acacatttaa aaccgcctaa aaaacctccg caaccgcttt taatagctac      1380
     tcttagctta aggcttagga aattcgaatg gctgcatcgc gacatcttat gccaatgctg      1440
     gcccgacttt aactgaccat ttattcatat cttgcttaca cagagattgc ctttccttaa      1500
     cctatgtcga agttgcacac cttcgatatt tacctacatc cagacccctc ctacaccacg      1560
     ttcacccccg gtaacttgtt atcaatcctt gtgttcgttt tccttctaat aaccattcta      1620
     ctggggtatt gggctgctcc ttttgttcga gaaccaatcg gattggttct aggagtacaa      1680
     catgcctgta tgcactccct gtagatgtca acctgttaag tgaacattct ggactataaa      1740
     aatgacacca ctcaaattgc tcaggatcag ttcttcaaat gcctcagtac tgtattctaa      1800
     aataattaga tccacatcgg tccttgcaat cgcgcctaac aattctaatc gtgcttttta      1860
     ccttttaaac gagtgggtga aaattggtaa caacattatc gtggttttta cctttataac      1920
     gcgtgggtga aaattgttaa caacattaca acatataaca atatattttt tgaataaaaa      1980
     tattaaaacc aaaaccctaa aaatggagtc attcgttgct tgtgatttgt gcaccaaaaa      2040
     tgtggagatg agtgagtttg aaactcatta tgctcagtgc tcaaagcctc ggaatgcctt      2100
     cgaggtttta atgtgtaaat caaaaataag gtgtgactta tgctctacct tagttcataa      2160
     ttatgaattt gacgagcact atcaaaattg taatggacct ataaatgcct tcaatgtttt      2220
     aatgaatgct gaaaaacggc aaccacaaaa cagaaggcaa aataatttgg acgatcatcc      2280
     cacaacatca tcaaatgctc tcaaacggat gagaatggat gagggtaagg aagtactcaa      2340
     acaaggaaaa aaagctaaga ttagcgaaaa taaaaatgat ttaaaattag aacttttatg      2400
     tcctacttgt ggtgataaat atcttgcatc aagggaacgt caacatatat tgaccgataa      2460
     gcataaaaat gcatcagcca gagaagtaaa aaataatgaa aacataattc ttcttaactc      2520
     tcaaactgtt tttcctgtta aatcatatcg aatcaatagt acagtccaaa acactattga      2580
     tttaaaagat ttttatcagc tttgccaaaa aaatataatt gaaattataa agcattgcat      2640
     gatagaatat agagccatta aattcaacct aagagtttat ggtacctata ttaaacaaac      2700
     agacgaagga gttactgttg aaacaacaaa acattttggg acatcttata aatctgtata      2760
     ccaaaatgaa agcattatcg atgaacttaa tatggcagta gatagcttac tagcatcgag      2820
     cagtgagttt caagaaaaag actctggttg ggcaataaaa aatttcaatt attttgaaat      2880
     tactataata aagctagaaa acattcctgc tagcggatac attcaggccc cgaagaatat      2940
     aagagcccga aatgcactta taaacgtaca gaatactgac gtattttgtt tcaaatggtg      3000
     catactggca ttcatagcta acaaaactca tgagagtgct acctttacaa cagcaaagca      3060
     aaaaaagtat tcacgagaga aaatgacaaa gcccacaact taccacatta atattaataa      3120
     tgaaataatt gtatatgacg gaataagatt ggatttttca ggaatcgagt ttccaataac      3180
     gaataaaggg attatccatt tcgagaaaaa taataaagac ttcagtataa atgtttatga      3240
     gatcgacgct gatggtgata aaattatcgg cccaacgttt agaaccaaat gtattcaaac      3300
     caaccacatc aatatattgg gaataaataa cgtaaaccag gacagtatgc attacgctta      3360
     cattacaagt gtaaaaagat tatgctactc acagcattcc aaggcaaaat caggaggata      3420
     tttttgtgat aactgtctac agtttttcac agttaataat actacccaca acaaacttga      3480
     atgcggaaaa gtggcctcgt tttaccctga accaaacact acaacttcat tcaagggctt      3540
     tcataaaaaa ttatctcctc cggtggtgat atatgccgat attgaggctg ttcttgaaaa      3600
     ctatagaaca tgcctaaatt cgtcttcaac atcgtcaaca acaaaagtgc agaagcatac      3660
     tgcatgtgcc gtatcatttt atatagcaca taaatataat ccggatctta acgaattgtg      3720
     gacatatgaa ggtatgtaaa aacaataaat aattaatttc ttagtatttt aaaaactaat      3780
     tcaaattttg tataatttta taggcgctga ctgcatacaa aaattctgca aatcactaaa      3840
     ggaaaaaact acgagcttgt tttacatgta ctggtcgacc cccaaaaacc cgattgctag      3900
     cacaatccat gaacaggaag gaaattgctg tgcctgtgaa aaggaaataa acgctgacga      3960
     cctggacaaa tattttgatc aattttctgg aaaatacatg ggtcccattc ataaaaattg      4020
     taagccaaag tacaaattaa gtgatccctt ctttcctgta gtatttcata acttatctaa      4080
     atatgacata catttattca ttactgaatt agaaggagac ttaagcccta taccctgtaa      4140
     taaagagctt tatatagcgc taacgcagac aattaaaata aatgcatcaa atagatataa      4200
     aataagatat atcgattcga ttagattttt aaattctagt ttagaaaaac tatcaagcta      4260
     catggaggac aaagatttta aaattctaag tactaaattt cagggagaaa aatttaagca      4320
     aatgcgtagg aagggtgttt cccttacgac tatttagata gttttgaaaa atttgaggat      4380
     acccagcttc ctgacattga tagtttttac aattctctca gcgaagaaaa ttgtagtata      4440
     gatgattaca attttgcaca aaaggtttgg aaaactttta actgtaatac tataaaagat      4500
     tatataaaac tttatttaga aagtgatgtt ttaattttga ccgatgtttt cgaaaatttt      4560
     agaaaaattt gtcagaaaat ttataagctt gaccctatta actatgttac agcaccgtca      4620
     atatcttggg atgctatgct caagtatact aatgtaaatt tagaacttat tagtgacgga      4680
     gacatgtaca actttttaaa aagagcgata aggggtgggt taactcaatg tacccaaaga      4740
     atttctatag ctaataataa atatataact aacttcgatt caagtaaacc aaataactac      4800
     ctcagctata ttgatgcaaa taatttatat ggttgggcaa tgagtcaacc cttaccgctt      4860
     tcaggattta aatttttaag taatgatcaa ttagaatctt tcgatttcaa aaatatttct      4920
     gctgatggaa atgtaggata tatattagaa gtggatttag aatatcctac tgatcggcat      4980
     gactcgcata actacttgcc tttctgtcca gaaaacaaag ttcctccagg aggtaagcag      5040
     caaaaactta tagctgattt atcgaataaa agcgaataca ttatccactt aaaacagctt      5100
     caactttgta tacagcatgg tttaattgta aaaaaaatac atagggtttt gtcttttaca      5160
     caatcatgct ggttaaagcc ctatattgat ttaaacactg atcaaagaaa actagccgaa      5220
     aatgattttg aaaaaaattt ttttaagtta atgaataatg cagtatacgg caaaacaatg      5280
     gaaaatgtgg ccaagcgtag aaatatagta ttagtaaaac attataaatc aagacaaaat      5340
     tcgccaggct tcaggcaacg catagctaga catgacttcc atagcgttga gatatttggg      5400
     acagatcttg cagcgattga atcaacacca tcaaaaatta tgtatgataa gccaatatac      5460
     ataggagttg ctgttttaga attatctaaa tggttaatgt atgaatttta ttataatttt      5520
     ctattactta aaagtccttc ttcgaaaata atttatatgg atacagattc atttatttta      5580
     tcttcagagg aagactttta cgaaactata aaagaaaatc ctgaacgatt tgatacctca      5640
     aattataaac tagaaaacca atttaatata gttcaagcta ataataggga acctggcaaa      5700
     atgaaggatg aacatgcagg tagggttatg acttcttttg ctggactgaa ggctaaggca      5760
     tactcttgtt tagttgataa ggaaggaaac gaaaacgaat gtataaaaaa aattaaagga      5820
     gttaagaaat cagttattaa aaaactgaat catgaagatt atatagaatg tataaaatat      5880
     aaaaaaacat tttatggatc ccagcgagtt attcgaagta ggtcgcacat cctctatact      5940
     gaaattatga ataaaataag tcttaattat aaggatgata agagatatat tttaccagat      6000
     aattgtaata cattggctca tggtcattat aatattgaac atatattaag tagtcaaaat      6060
     taaacccgtt attaagtaaa tgtttatatt ataagaataa aaatttgtaa ataaatagat      6120
     aaaaaattaa acttgttatt gttgcgtttt attactttag caggtcattt acagatatcc      6180
     atgagttgtg gctggaatcg aaaccgctcc attttacaag cacttgatta tttttccttt      6240
     ttagtatttt ctctactagg aaagcatttt tgtctttcac tttttgaagt tcctcttcat      6300
     aaaatgaccc attaataggg gtacccatat aatcttgtat ttcatatgtt acggggtatg      6360
     tagacttgac ttttaaaact ttaaaaactt ctgtggtcca attaggttcg tatcccttca      6420
     taaatgctcc cttgtattta cttattctaa caaaatcacc tactaaaaat ttatgttttg      6480
     gaaatatttt tggtatatta tataccgatt ttaaaataaa ctcttcattt ttcgtgcaga      6540
     catctatagg cttcatttta attgttcggt gatatgaatt attgtattga tttacgagat      6600
     aattgatgtt atgaatccac ttatatttac cctgcatact aaacattttc cacatacgat      6660
     tttttaatgt tctattaaag cgttcacata tagaagcctt gagatgcgta taagtatgat      6720
     aatgatttat atcaaattta tccattaatt tcctaaaagt ggaattaaaa aattctttcc      6780
     cttgatctga ctgaatattc ttgggtgtac ttttactctt tttaaaaaca gatttcattg      6840
     cctctgctac atccagggca gactttgact taactgcctc ggcgtatgca tactttgaga      6900
     acgtgtcaat aacggtcagt aaatatctaa aacccttatt ttctttcgaa aatggtatca      6960
     tttcaactaa atcaatttgc catgtgtcat ttatcccttt ttgaacgaac tttcgccgta      7020
     tgaagttttt tcgcgctgcc ttatgaattt catcgacaac ttgttgtttg ctcatcttaa      7080
     ggtgttgatt tattagtatt attttttatt tgatgacgat ggttgcttag tcaataatgc      7140
     ttgcttatat acaagaacat ccctttttat ttctgaacgc atcttttttg atatttcaaa      7200
     acataatcgt gttaaatcta tttgcacatc cttatcatag gtaccttcta aatcagatag      7260
     ttgaatatca aatttttgta aagatacaca cttaggaata atatgattat tgtaaagata      7320
     tattacttgc tgtcttaata tggagttcca acataaaaat gtagtaaaaa atatgcctaa      7380
     tcttagtaat gatctccagg actcagaatc aaactcaatt ttgttaccat actgattaat      7440
     cacaaaaacg tactgattat ctgatttcct aaatctaaag ttacatttta tggagtgcaa      7500
     gcacggatga tcaataattg tatcaggcat caagaagtca tactggtcca gtttcaactg      7560
     aataaattcc ttatacgtaa gaagttgcat ccattcgtct ttgtcaaatc caatgaaatt      7620
     atttttactt tgctgcatcc aaaccatcgg caaaaatttt cgagtagttg acagaccaca      7680
     tttcaatttt aagttatgaa caacataata ctcgaatcca aaaatgactt cgtggtcctg      7740
     tttctttcga gaagttttat ttcttttagt tacacacatg tccatcaggt aagactactt      7800
     taaataaact gtaaatatgt tctagtctta ccggtatata aaggagaaag ccctagcaag      7860
     cacaccctca gttgattaaa aaatctcaac caatgatgaa cacagtcgat cgtaattcaa      7920
     gcattatagt agattttcaa tatgtacttg gtaacaacaa acaagttttc gttaaggagc      7980
     tggcgtttat gcctgctgga actgttatac ctaatttttt ccatttcaaa ccgccatata      8040
     acataaaaga attggataat ggagctctta agcagcagca ccttaaccag cagaacataa      8100
     acggattgga ttggtcagct ggagatattc catacacaag tcttgaagaa atactcacac      8160
     cactcaataa gtatcacaca gttcttgttc gtggtgaaat taaaaagaat tttttaatca      8220
     agtatttatc aacaaacatt atcgatatag atatcggaag aagtttaact caactaccca      8280
     atttttttac gaattgtaga atacacaaga aaaaacttcc acttcgatgt tcattaaata      8340
     atttatttaa gctgtttgta ttcttagaaa acaccaatta tgaaatatat agtaatggtg      8400
     acacatgtgt ttaaaattta gtaaaaagaa attcatggtc ctatcaggtt gtctcttatt      8460
     atggattctt ttaagagatt ttttggaaat gatccccgta aaaatggata cacgcaactt      8520
     atttattgta attattgcgg atctgatact catttcgaga agaactgctc caagaaacgc      8580
     gatcaagtga atattaataa aacctaatat aacttaaaaa cattatataa gcaattagta      8640
     ataatataat atattaaaat tcattccgaa taaaaaaatt tttttaataa aaaatgttta      8700
     cacaatttat acatcctttt acaatgctta tttgtggacc ctcaggatcg ggaaaaacaa      8760
     cctttttaga aaatctaatc accaaaaaga atgatctttt taatatttca atagatcgaa      8820
     ttatttggtg ttatgcagag gagagtgcca agcccaattt cgaaaagatt gaatatttta      8880
     aaggagtccc tgaaacagtt gaaaatgaaa cgaatgaacc aattctttta atattggatg      8940
     acttgatgat gggagccttt aataaaaatg tgtgtgagct gtttacaaaa ggatcacacc      9000
     ataggaattt atcagtaata gtggtaactc agaacatatt tcataaatct tcgcacacca      9060
     gagatatttc actaaatacc aaatacattg ttgctttcaa aaatcctcgt gataagcttc      9120
     aatttcaatg tttagcaaga caaatttacc cagaaaaccc cacggagcta tttagaatat      9180
     ataaagaagt aacggagcaa cctcacggat atttacttat tgatctcact cagggcatta      9240
     acgatctctt aagatttaga tctgacattt ttaattcaga atattctgtg tgctattcaa      9300
     atgaaaatgg tttacaaaaa gagcctaaat cgcttgaaag cgaacaaaca tttattgtat      9360
     gtgctcaaaa aggccgacaa tagactacgt aaggcaatta taagcaatag taatagtgac      9420
     ctggtaaaaa caatagtaga gattgtattg aacacattac agggaaacca taaagttact      9480
     aaatcccatc ttaatgctct aaaaaagtat aaaaatgcat tgcgctacct ttcgtgccca      9540
     aaacgtacat taaactctaa gagaaaagtc cttattcaaa aagggggatt tctaccgatt      9600
     ctaataactt cattgctttc tggaattttt ggaaaactat taaaaaatga ttaagaataa      9660
     acataattta agcaaagtaa ttttaatgca tcctaacagc tatcagaaat tgataaacaa      9720
     tgatagagga aatgaattaa taaatataaa atttttacca atattaaata ataacaaaat      9780
     aagtgatttc gataaatgga tcaaaattcg tcaagaatta agttactatc aaaacaaaaa      9840
     acgtaataaa tcatggaatt ttcaaaatga acaaaaagcg aatcctatta caaccaaaac      9900
     aattgaatcc caaaccactg attggattga tataaaaccc agcacatcaa aatcaacatc      9960
     aaagtacgat cactcacgtc cggaaaaatt tgagtttccc gatttaccac ctgaaagtga     10020
     taatgaggat tttagttcaa ataaaaagaa aatgttgttt cagataaacg aaaagtgagt     10080
     gatacctctt ttttagatag tgaaacagat aaaaagaaaa taggattaga gaaaccagtg     10140
     ctcaaagcga agcttaatga acgacaacgc aaattcaaag caaaactaca aaaattgaaa     10200
     acggaaactt taccttatca aaattttaaa tatgtaacag gacgtgaaag gttaatgcga     10260
     tcggttagaa caaaaaatcc agtacaaact ggtaaaaata aattaaattg gatttcgtat     10320
     cattaacttc cataaatatc aaatatgggt tatttaaatg agatttttat cacattgtta     10380
     agtaacgact caatgaatgt atttcctgac aacgtaaagt gtgcatttac aaacattgtt     10440
     aacattccag aagacatgaa cgatgattgg gaagtcggta tttcagacat atatttgaat     10500
     aattacatta aatatacacc taaccaagat aaaaatgtcg ttgaagaaac cgagtttgtt     10560
     agtcttgtaa atgctgaaac atttaggtat aaaaatgtat ccgttaaaac gaatattcct     10620
     gaaaatggat tgatttttat ttacactgac ataataaaac caaggtcagt aggtagtaaa     10680
     agaccgcgat gtcttcgtgt aatgcattat aatggaaagg aaagaaatat tcaatttaaa     10740
     aatattgaat attacccttt ggacatatgg tcgccaaatg aaatctcaat actcattact     10800
     gattccaatg gatataaggt accatttgaa acttcagctg ttccgatttt cgttactctt     10860
     cactttagaa gaagaagaag gtcaggacta taaataatgc atacccaaat attatttatt     10920
     tagaaccaaa atagtcatca tggtgaaatc ttatcaggat tattatgtaa atcagtgtgg     10980
     tgggggctta agcaacatcg gaagtcttta catatctccg catatagtgc aacaaggacg     11040
     aggaatcgga aattttttta gcggtctttt taattacata aaaccacttt ttctttcggg     11100
     cataactgct ataaaaaatc aggctgctga gactggtaag gctgtaatca atgaatttgg     11160
     gagaaagcct ttaagaaata taattcaaga acaaagtaaa attgctttac aaaatctttc     11220
     aaataaagca attgataaaa ttacccgttt tcaaagtgga agtggaaaaa gaaataaaag     11280
     gctaggtaat aagaaaaaac gacttcatta tacatctaaa cgaccacgta aacataccca     11340
     aacgcaacat aaaaaaaaaa aatcaacaag aaaattaaat attaaagata ttttttctaa     11400
     agcaaaatga gtacgcatat cgaatgtatg aaaagtgaat tagatttgtt tgcggcacac     11460
     cccacgcaaa gttctattct aagaactgaa gaagtctcat acaacccaat tgcttctttg     11520
     gacggtgcct cttcaatcga atttgtttgc ttgggaaatg gtgaaacgta tcgagattta     11580
     tccagtgttt atttacgact tgttgtgcaa cttaaaaaaa atgataacaa cagcattgaa     11640
     ggaaatgctg ttggtgttgt aaacaatatt ctacattcaa tatttagaag ttcgtcagtt     11700
     tatttaaata atatactggt atcgcaaagt gataataatt atcactatag agcgtatttg     11760
     caaacaattt taaactatgg gagtgacgcc tctgaaagtc acttggcctc ccaaggttat     11820
     tttcccaatt ttggaagaat aacagcaggg aaatatgttt atccggactc gaatgaaacc     11880
     cttaaaaata tgtttcaaaa tagtaacaag gttgagttat tcggaaaagt tcatggagat     11940
     attttcaatc aaaccaaact gcttgttaac aatgttgatt taagaatcaa tttcaatatt     12000
     gaaaaaacag cgttttattt aatggaaact ggtactgaat caaatttaaa gatacttgaa     12060
     gcacaacttt tcatgaacca cataacagtt aacccaagca ttttattggc tcatcatcat     12120
     gttttacaaa caaaaaatgc tctgtaccca ttcagcaagg ttgaagtcaa atcatttaca     12180
     atatatccgg gcaacaacac actgtcgata gacaacgcag ttattggtca aataccaaat     12240
     tttctggcct tttgtatggt taagaaccgc tcatactcag gaaaccgagg cttagaccca     12300
     tttcaatttg aacattttaa aattcaacgc tttaacctat tggttaacgg agttcaagtt     12360
     ccttcccagg ctctggagtt cgattactcg aacgctgaaa aggttcagag ctcaagaggt     12420
     tataatatgc tttttagatc atgtggaatt aaacattacg atcgtggact acaaattacc     12480
     aaggaaatgt ttgattcaaa cagttttata ttagcctttg acttaactgc tgatcaatca     12540
     aattcaacta tatgttcaaa tttaatctct caaggtacta taagaatcga aggaagattt     12600
     tcggaaccac ttgctgaagc agttacttgc ttggtatact gtgaatacga ttcaatgatt     12660
     gatattgata agcatagaaa tattcgtacg ctcttttaaa atgaatactt tacaaattga     12720
     acattttctt tctaagcatt caaagacaaa atctattttt aaaggagttt ttccttctga     12780
     taggttacca aaaactattt taaagtatcc cgcactaata attgcgaata ccgacacttc     12840
     agatcaacct ggaactcatt ggattgcatt ttattttgat agtcgtaggt cagcagaatt     12900
     tttcgattca tatggtcaat atccccagaa aaaagaattt ttaaattttt aaaatctaac     12960
     gcttataaat tttgttttaa taagcaacaa ctgcagggat acttttctaa cacttgcgga     13020
     cattattgta tgctgttcgg tctttttaaa agtaaaaaga aaacactaaa ttctttttta     13080
     agaaaattca agaaaaacga ctattcattt aatgataaat taataataaa aatgtttaag     13140
     aaccatttta aaaaataaaa aaaacatata tatatttaag taaaattaaa tcgttttatt     13200
     tatggttttg gagcaatacg tttgtttaac ttataatatt taatcattag actaagggct     13260
     tcctctttca gtgcaggcag catatgacac tgacatgtgt ctggtccaga tgaggcatca     13320
     tcgtcgctcc agggacaaag tttataatgg aatccaaact tcgaatggat caactctttt     13380
     tcctctaaat cctccaaagt agcttttagg aactccatcc tttgtaggtg ttgctcgaaa     13440
     agcatgcctt caaattgcat caagaatagt tctatctgtt gagcgtacat ttttaaggaa     13500
     aactatttct ttttgagact gatttaagac tgttgttgga tttaaaaact cagctcttta     13560
     tattgaagaa tcttatttac tttacttatt tactgataaa aattcaattt gagcacaact     13620
     aaatctgttc agatcttttc ctttatatac catatgagtt attccattct catttaattt     13680
     cctaaatggt gtctttgtag aaaatttgtt cacataactt ttaggtagaa atatccaaac     13740
     atctttatcg tccttatcag ttaaatacag agctatttta gttccatatg gtgtcttttt     13800
     cagcttacat ccagtgatct tatactcaaa tccaatacat agattttcaa tttttgtgta     13860
     gccaatcaca ggcttcacgt catttaaggt ctctaagaag tcctataaaa ttcaacaaaa     13920
     ttaggtgata aagtatttac ttttaattta tatgcatacc atttttgatc agcgtaagtt     13980
     tggattcgtc gtgcactagt acctaactgt tgtatactaa ttctttaacc agaaattaca     14040
     tggtctttta tacttgtcaa aaactataca cttctatcaa ttcatgtgga gtaaatgaga     14100
     taacaatatg tcttcattat atgcaccaaa atacttattc aaactatgta atacttgaga     14160
     ataaagtcag aaatacatat cagtatgtct atctcttttt atatttatat aaatctttca     14220
     atagcgttaa aataaagtta gtatatataa cgtaagaatt gtccctcaaa tgctatataa     14280
     gataaatttt ttatagaaaa gtcagtttat ttttaaaaac atcgaaatgg tgaagtacca     14340
     ttgcgagttg tgttcagaaa caaaatcctt tactactcgc agcggtctaa aagcgcatac     14400
     attaaaaata cacaacttcg cctatcagaa atctaaatcc tccttttatt attgttattt     14460
     ctgtcctaaa gtacggaaaa tttggttgcg atacgacttt aatatgcatc gtctattggt     14520
     tcacaacgca gagctaaaaa gtatttgtaa ggcaaagaaa aattgttcaa taaataaaaa     14580
     acaattataa gccctcaatt ttaaaatagt ttttacttta tttttcttta tgcatggtgt     14640
     atttataatt aaaaagttaa gaatctaggt caaataaaac atctagtaat gcgtcgtcat     14700
     ctccatcatc cagcaaagtt aaataatggt tagtcggtgg cggttgaggt cccataagtt     14760
     cttcaaagat gtggtcgtcg ttaggaaaaa cctcatcttc tggcctggat aggtcgtcgt     14820
     ccaattgaaa ttcctgtgcg cactgaaata catcttcacc ttcttcgtgt gtgataaggg     14880
     attccaagaa agcctgcgta gtagtcccca atggaaactg gctccactca agagactcca     14940
     atcctgggtc cctattttgg gtcgacgatg cagccggttg aaatacgctt tgtagaaggc     15000
     gatcaaccga atcttctgct tcggaaacct gcacaagttc cagatccgag ttttcgatta     15060
     tttcgagatc agaatcttgc gtgggtggta attccgggtt gtcaatctca acctcgtttt     15120
     ccgaatcgat aaattctacg gttagatcca taggtatgca gtactgaggc atttgaagaa     15180
     ctgatcctga gcaatttgag tggtgtcatt tttatagtcc agaatgttca cttaacaggt     15240
     tgacatctac agggagtgca tacaggtatg ttgtactcct agaaccaatc cgattggttc     15300
     tcgaacaaaa ggagcagccc aataccccag tagaatggtt attagaagga aaacgaacac     15360
     aaggattgat aacaagttac cgggggtgaa cgtggtgtag gaggggtctg gatgtaggta     15420
     aatatcgaag gtgtgcaact tcgacatagg ttaaggaaag gcaatctctg tgtaagcaag     15480
     atatgaataa atggtcagtt aaagtcgggc cagcattggc ataagatgtc gcgatgcagc     15540
     cattcgaatt tcctaagcct taagctaaga gtagctatta aaagcggttg cggaggtttt     15600
     ttaggcggtt ttaaatgtgt tttgtatgag ttgtttttaa ttgcaagcgt atactcatcc     15660
     cagaatcagt gtgtttggta ttccacggaa ccctcccttt gtattgcatt tcaaatattg     15720
     tgacccctcg ttatcttctg agaatgagca ggagaaagtg aacgtgcgta cccacgaacc     15780
     cgaatctcac ccctaccctc gagtccttgc tcatgactgc ttgtgcgcga aggtgtgaaa     15840
     ttttaatttt gtgagttttt ttcaaaatgt gcagttttta ttttagaaca gagaaaatta     15900
     taccattgga aagggcttga aaaatgcttt ccaatgacac caattttttt tttttttttt     15960
     tagtgagggg gtatactatt tacggtagcg gaggtcatcg tcgttttttg cctttttcag     16020
     tcgagtagtg ggaatatacg ggaggaggca gaatttgaaa ttcggtacaa ttttccgctt     16080
     cagtgcaccg ttttaagaaa ttcttaaaac taaacttctt atcctacaca taaattttat     16140
     tgggtggcct ttagatataa accctgaaaa gtgttcccaa taagaaattt aaaacataaa     16200
     ccttaaagtg attccactag ctgacttttc tatacacacc cgtctaactt tatcgtagac     16260
     aaaaacaatt tcgatatcct cagccctaaa aagtgatcct ataagtctta tacaacttta     16320
     acattaaagt gattcttcag ctcatttttc ctagacacac tcctcaaaag gaatcgtata     16380
     acatataaga aaaactagag tataagaccg cagcggcggt catcgcagcg gcagtctcgg     16440
     cagcgwccaa acctccgctg cgaaaaccgc cgctcccgta tattcccact actcgactga     16500
     aaaaggcaaa aaacgacgat gacctccgct accgtaaata gtataccccc tcactaaaaa     16560
     aaaaaaaaaa aaaatttggt gtcattggaa agcatttttc aagccctttc caatggtata     16620
     attttctctg ttctaaaata aaaactgcac attttgaaaa aaactcacaa aattaaaatt     16680
     tcacaccttc gcgcacaagc agtcatgagc aaggactcga gggtaggggt gagattcggg     16740
     ttcgtgggta cgcacgttca ctttctcctg ctcattctca gaagataacg aggggtcaca     16800
     atatttgaaa tgcaatacaa agggagggtt ccgtggaata ccaaacacac tgattctggg     16860
     atgagtatac gcttgcaatt aaaaacaact catacaaaac acatttaaaa ccgcctaaaa     16920
     aacctccgca accgctttta atagctact                                       16949
//
ID   Polinton-1_DBp repbase;    DNA;    INV; 7049 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-7049
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 732-732 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Partial sequence. ~84% identical to
CC   Polinton-1_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1110..1745
FT                 /product="Polinton-1_DBp_1p"
FT                 /translation="YQYIQTQVPVFRFRGSIGFEVYAKNQIFSINLALPVK
FT                 AIFTLFLFPKNKKQKPKNIKMESKVACDLCSKVISVNEFITHYERCEGPRN
FT                 AFSEMNKKSQANGLAKVLYRSRTTVSKKQDENQQPKIQGIRIQGTTAKHSI
FT                 FNVSSAVKRKAGVPKETSPQEGQPMDIEEQPSTSKRARLDRTIAERIFVPI
FT                 VSKIMLSLRKEFIYILQIIEQH"
FT   CDS           1774..2889
FT                 /product="Polinton-1_DBp_2p"
FT                 /translation="HFSYNTQSDTFYTKKYKVFGVRDLDLKEFYMDVKIIL
FT                 KNINYKAIYVSSYNDIEYILNDDNEMLIAKADEFQERDSGWAIKHFTFYEI
FT                 QILKLEHLPGSGYVEAPKGIRKRNALINVKNNDIYCFKWCILAHIAYMKHI
FT                 QLNFDTSAQKKSAREKLPRTSFYGILDISQPIIKYDQKRLNFSGIEFPITK
FT                 DGIKLFEKNNSNYSINVYEIYNGRIEGPTIRTKEVKSNHIDILGIENPKEN
FT                 CLHYAYITSIKTLCKSQVNHSNSERYFCRNCLQFYCTTNKTHNIKECGQVA
FT                 ALYPQPNTKTKFENFSKKLSPPVVIYADIEAVLENYHTASNNPNASYTKPV
FT                 QKHTACAVSFYVAHKYNPHLNKLWTYEGK"
FT   CDS           3025..5229
FT                 /product="Polinton-1_DBp_3p"
FT                 /note="DNA polymerase B."
FT                 /translation="QILEGSKKPIYNFDICDEDYQEHGNCYACEEAISTDE
FT                 RVQYFNQFTGKYQGPIHRSCKDSFKLRAYFPVVFHNLSRYDIHLFINALGG
FT                 KLKPIPSTKELYIALNQTIFEKGKTNYTIKYIDSNRFLNSSLEKLASNMED
FT                 KDFKILKSKFSGEKFRQMRRKGVFPYDYLDSFEKFNETELPPREYFYNSLK
FT                 DEECSVSEYNFAKEIWSSFQCRTLKDYMKLYLESDVLILADVFENFRNICT
FT                 RIYKLDPVNYVSAPSISWDAMLKYTKVELELISDPNMYNFVKRGVRGGLTQ
FT                 CTQRISKANNEYMRNYDKTKPTNYLSYIDANNLYGWAMSQKLPISNFKFLN
FT                 ENESNSFDVQNTDSSGDTGYILEVDLEYPDEIHDKHNSLPFCPENKVPPGG
FT                 KQPKLIADLNSKEFYIIHLKQLQLCLTHGLKLKKIHRIISFSQSYWLKPYI
FT                 DLNTKHRKTAKNEFEKNFYKLMNNAVYGKTMENVEKRREITLVTRYESAQN
FT                 SPGFRQLVARNNFHSVEIFGESLAAIETTKTSIMYDKPIYIGFTVLDLSKW
FT                 LMYDYYYNFLLVECPTAKIIYMDTDSFIVSCKEDIYKMIKKNSSRFDTSNY
FT                 ESGNRFNIIQANNKELGLFKDENAGKIMTSFAGLKAKAYSFLVEDNDEYIN
FT                 TKKVKGVKQSVMKKLCHFDYIECIRHKKTYYGEQRCIRSRGHKLYTEVVNK
FT                 VSLSPRDDKRWVLVCNINTLAYGHYKLRSLLNTNG"
FT   CDS           6298..5372
FT                 /product="Polinton-1_DBp_4p"
FT                 /note="integrase."
FT                 /translation="MSKQQVVDEIHKTCRKNFLRRKFVQKGLHDTWQIDLV
FT                 EMIPYSNQNNGYKYLLTVIDTFSKYAFAKPVKSKSAMDVATVMKSILKDSK
FT                 YKPKNIHSDQGKEFFNQLFKELMKKNNINHYHTFTHLKASICERFNRTLKN
FT                 RMWKMFSFNGNYRWITHLNSLVEDYNHSYHRTIKMRPIDVCKQNEEFILKT
FT                 CYNIVKVFPRHKYVVGDHVRISKYKGVFVKGYEPNWTTEIFTISKIKTTFP
FT                 VTYELIDYKGDPIKGTFYEAEIQKVKDKSAFLVEKVIKRKKDQICLVKHWL
FT                 GFDETHNSWINKTDLLK"
FT   CDS           6982..6365
FT                 /product="Polinton-1_DBp_5p"
FT                 /translation="KRXSHXKKXNHEVIFGFEYFAAQNLKIKCGFSTSRKF
FT                 TPMIWMQQHKNNYIGFDKEEWMXLLTYKEFIQLKIDQYDFLMSDTILDHPI
FT                 LSTIKCNFRFRKSDKQYVLILNQFGNKIEIDSDTWRSLIRLAIFLTTFLCW
FT                 NTILKQQISYLYYNHIIPKCVSLQKFDIQLSDLDGNYDKNVQIDLTRLCFE
FT                 ISKKSDKRNKRRCNSL"
XX
SQ   Sequence 7049 BP; 2560 A; 1047 C; 1119 G; 2313 T; 10 other;
     caggaaaatt ttagtagtat gtaattaggc aaacggcgta cgagggaaat ttaatggcgc        60
     catctatggg tcaagtttgt gtaaaattgg gcagcggcat ctaccgttat attttatacg       120
     ttacgccctc tattgacata aaagcaaacg atcatgtcaa aaattaaact tgacaggatc       180
     atcgccgtct atgttttcta tattttctga tatcttgcat tggttcccat taagggaaat       240
     atgcatgtaa agaaaagatc atgtaaaaat gaawcttgcc aggatcatcg kttgcctaat       300
     tacatactac taaaattttt ctgccgctta tacgccgttt gcctaattcc ctacmaattc       360
     aactgmccac ttaagatacc tgtctaagat tcaggatcgt gaaaaaataa ataaaattga       420
     tgaacaaaaa aaatgcttat ttacaaaaat tatattcagg ttgctgcagt tcatttaaaa       480
     gtatatttta ctacaattct tttgtaatta atttaaaatt aatgatgaag aacaaataat       540
     tatttaaaaa acaaaatttt attatggtgt tgcatatcat ttaaaaggat tttttactcc       600
     aattcttttt taattaattt taaattaact cggacttata taaagaaatt taattttata       660
     atataaaata taatacagaa ttttacaagg agtaagtata tcacaagaaa accttttcgt       720
     agaaaagtga aaatccaccc tgaagggtca agaaaaaaaa aaaaggaacc aattgacctg       780
     ctgcgatccc tttttatcac tttcttgcag gagacatatt tatgtcaggg tcggatgaaa       840
     ggtcaatatg tattttttat ttaggattat atatatattg agtgtatatt ggattgtgga       900
     tttacgttcc caccaacata tacatgcata cacggatatg acgcaagaaa tcagccgatt       960
     gcctatttac tccctactgt aggctctagg ctctaagcgt tatcttttct ttcgagtctt      1020
     ctgattggtt ttcccgattc attaaccgga aaaatgtgkg gaaaattggg gtggttttca      1080
     tgcgttaact catgtacatg tattgatgat accaatacat tcaaacacaa gtacctgttt      1140
     tccgttttcg aggatcaata ggttttgagg tttatgctaa gaatcaaatt tttagtataa      1200
     atcttgcctt gccggttaaa gcaattttta cgctttttct ttttccaaaa aataaaaaac      1260
     aaaaacctaa aaacataaaa atggagtcga aagttgcatg tgacttgtgc tctaaagtta      1320
     ttagtgtgaa tgagtttata actcattatg agcgatgtga aggaccgcga aatgccttct      1380
     cggagatgaa caagaaatct caggccaacg gtttggcgaa agttttgtat cgttcgcgaa      1440
     caacggtgtc caaaaaacag gatgaaaatc aacaaccaaa aatccaagga atcaggatcc      1500
     aaggaactac tgcaaaacat agtatattca acgtatcatc agctgtaaaa cggaaggctg      1560
     gtgtgcccaa ggaaactagc cctcaagagg ggcaacccat ggatattgaa gaacagccat      1620
     caacatcaaa aagggctaga ctagaccgca caattgctga gagaattttt gtcccgattg      1680
     taagcaaaat tatgctttcg ttgaggaaag aattcattta cattctccaa atcatagagc      1740
     agcattaagg aaacttgtgt ggcaaaatgc taacattttt cctataacac ccaaagtgat      1800
     actttttaca caaaaaagta taaagtattc ggagtgcgcg atctagattt aaaagaattt      1860
     tacatggatg taaaaataat ccttaaaaac atcaactata aagcaattta cgtcagctca      1920
     tataacgaca tcgaatacat tttaaatgac gataacgaaa tgttaattgc aaaagccgat      1980
     gaattccagg agagggattc tggatgggct attaagcatt ttacatttta tgaaatacaa      2040
     atattgaagc tggagcacct tcctggttcg ggatatgttg aagcacctaa gggcataaga      2100
     aaaagaaatg ctctcataaa tgttaaaaat aatgacattt attgttttaa gtggtgcatt      2160
     ttggctcaca tagcatacat gaaacacata caattgaatt ttgatacatc agcgcaaaaa      2220
     aaatcagctc gcgaaaaact gcccagaact tcattttatg gaattttgga tattagccaa      2280
     cccattataa aatatgatca aaaaagatta aacttttcgg gaatagagtt tcccattaca      2340
     aaggatggaa taaagctgtt cgagaaaaat aactcaaatt acagcataaa tgtatatgaa      2400
     atttataacg gtcgcataga aggtcctaca attaggacta aagaagttaa aagcaaccat      2460
     attgatatat tgggtataga aaatcctaaa gaaaattgtt tgcattatgc atacataaca      2520
     agtataaaaa cattgtgtaa atcacaagta aatcactcaa attcggaacg atacttttgt      2580
     agaaattgcc tacaatttta ttgcaccaca aacaagaccc acaatattaa ggagtgcggt      2640
     caagtggctg cactataccc ccaaccgaac acaaaaacca aatttgagaa tttttctaaa      2700
     aaactgtcac caccagtggt aatttatgcg gatattgagg cggttttgga aaattaccac      2760
     acagcctcta ataatccaaa cgcctcttac accaagcctg tacagaaaca tacagcatgt      2820
     gctgtttcgt tttatgtggc tcataaatac aatccgcatc tgaataaatt atggacctat      2880
     gaaggtaaat aaattcaaat cataaaatta taagttttaa aattaataat aatattattt      2940
     ttattccttt ttataaatta cagggcatga ctgtatgaag gtgtttgtaa aaactttgga      3000
     agaggagaca atggttttat ataacaaata ctggaagggt caaaaaaacc tatatacaac      3060
     ttcgacatct gcgacgagga ctaccaggag catgggaact gttatgcgtg tgaagaggcc      3120
     atcagtacgg atgaacgcgt acaatatttt aaccagttca cgggtaaata ccaaggacct      3180
     atccatagaa gttgtaaaga tagttttaag ttaagagctt atttccctgt agtttttcat      3240
     aatttatcta gatatgatat ccacctattt attaatgccc tagggggtaa attgaaacca      3300
     ataccctcca ctaaagagtt atatattgct ctaaatcaga ctatttttga aaagggaaag      3360
     actaattata ctataaagta catagattcc aataggtttt taaattcaag tttagaaaaa      3420
     ttagcttcca acatggaaga taaagatttt aaaatattaa aatcaaaatt tagtggagag      3480
     aagtttaggc aaatgagaag aaagggagta tttccctatg attatttaga tagttttgaa      3540
     aaattcaatg aaaccgaact tcctcctagg gaatattttt ataattcgtt gaaggacgaa      3600
     gagtgtagtg ttagcgaata caatttcgct aaagaaattt ggagttcgtt tcagtgtaga      3660
     actctaaaag actacatgaa actgtatttg gagagtgacg ttttaatttt agcagacgtt      3720
     tttgaaaact tccgcaatat atgtacaaga atatataaat tagacccggt taattatgtt      3780
     tcagccccat ctatttcatg ggatgctatg ctgaagtata caaaagtaga actagaattg      3840
     ataagtgatc ctaacatgta caattttgta aaaagaggtg tacgtggagg actgactcaa      3900
     tgtactcaaa gaatttcaaa ggcaaataat gagtacatga gaaattatga taaaacgaaa      3960
     ccaacaaatt atttgtcgta tattgacgca aataatttat atggttgggc tatgagccaa      4020
     aaactcccaa tttcaaattt taaattttta aacgaaaatg aatctaattc atttgatgta      4080
     caaaatactg attcctcagg agacacaggg tatattttag aagtagattt agaatatcct      4140
     gacgaaattc atgacaaaca taatagttta ccattttgtc ccgaaaataa agttccacca      4200
     ggaggaaaac agcccaaatt aattgcagat ttaaattcca aggagtttta tattattcat      4260
     ttaaaacagc ttcaactatg tctaacacat ggattaaaat taaagaaaat tcacagaatc      4320
     atatctttta gtcaatcata ctggttaaag ccctatatag atttaaatac aaaacataga      4380
     aaaacagcaa aaaatgaatt tgaaaaaaat ttttataaat tgatgaacaa tgcagtatac      4440
     ggaaaaacca tggaaaacgt agaaaagcgt cgagaaataa cgctagtaac tcggtatgaa      4500
     tctgcgcaaa actctccagg gtttagacaa cttgttgcaa gaaataattt tcatagtgta      4560
     gaaatttttg gagaaagttt agcagcaatt gaaactacaa agacttcaat tatgtacgat      4620
     aagcctattt atattggttt tacagttctt gatttgtcca aatggctaat gtatgattac      4680
     tattataact ttttactagt agaatgtccc acagccaaaa taatatatat ggatacagac      4740
     tcttttatag tttcctgtaa agaggatata tacaaaatga taaaaaaaaa ttctagccgt      4800
     tttgacacat caaattatga gtcaggaaac cgcttcaaca taattcaagc taacaacaaa      4860
     gaattaggct tattcaaaga tgaaaatgct ggaaaaatta tgacctcttt cgcgggtcta      4920
     aaagctaaag catattcatt tttggtagaa gacaatgacg aatacataaa tacaaagaaa      4980
     gttaagggtg ttaagcaatc ggtaatgaaa aaactatgtc attttgatta tattgaatgc      5040
     attagacata agaaaacgta ctatggagaa caaagatgta taagaagtag gggtcataag      5100
     ttatatactg aagtagttaa taaagtaagt cttagtccta gagatgataa aagatgggta      5160
     ttagtttgta atattaatac tttagcatat ggtcattata aattaagatc tttattaaat      5220
     acaaatggat aatgtcaata atcttgtacg tatttttaaa aatattaaat aagacacaaa      5280
     aaaaaaataa ataaataaat aataataaaa attaaaaatg tatatatgta tgtataattt      5340
     gtataaataa attccaattt gtaaaatttt attttaataa atctgtttta tttatccatg      5400
     agttatgtgt ttcatcaaaa cctaaccaat gttttacaag gcaaatttgg tctttttttc      5460
     tttttattac tttttcaact aggaatgcac ttttgtcttt aactttttga atttcagctt      5520
     cataaaatgt accttttata gggtcaccct tataatcaat gagctcgtaa gtaactggga      5580
     atgtagtctt aatttttgaa attgtaaata tttcagttgt ccagttaggt tcatatcctt      5640
     taacaaatac acccttgtat ttgcttattc taacatggtc tcctactaca tatttatgcc      5700
     ttggaaatac cttaacaatg ttataacatg ttttcaaaat aaactcttca ttctgtttac      5760
     aaacatcgat tggcctcatt tttatagttc tgtggtaaga atggttgtag tcttctacaa      5820
     gcgaattcaa atgggtaatc catcgataat ttccattaaa actaaacatt ttccacatcc      5880
     tattttttaa agttctgtta aatcgttcac aaatcgaagc cttaaggtgt gtaaatgtat      5940
     gataatgatt tatattattt ttcttcataa gttctttaaa gagttgatta aaaaattctt      6000
     ttccttgatc ggaatgtata ttttttggct tgtatttgga atctttcaat atagatttca      6060
     taacagttgc aacatccatt gccgattttg attttacagg cttagcaaaa gcatattttg      6120
     aaaatgtatc aataaccgtt agtaaatatt tatatccatt attctgattg gaatatggga      6180
     tcatttcaac caaatcaatt tgccaagtat catgcaaccc tttttgaacg aactttcgac      6240
     gtaaaaaatt ttttctacaa gttttatgta tttcatcaac aacttgttgc ttactcattt      6300
     ttattttaaa aaaacttatt ttttattgtt aatgtttgag ttcttagaga ttaatgattt      6360
     cttataatga attacatctt cttttatttc ttttgtcact ttttttagat atttcgaaac      6420
     ataaacgtgt taaatctatt tgaacatttt tatcatagtt accatctaaa tcggataatt      6480
     gaatatcgaa tttttgtaaa gagacgcact tcggaatgat atgattatag tacagatagg      6540
     atatttgctg ttttaatata gtgttccaac ataaaaatgt agttaaaaat atagctaggc      6600
     gaattaatga tctccaagtg tcactatcta tttcaatttt attaccgaat tgatttagta      6660
     tcagaacata ttgtttatct gattttctaa atctaaaatt acatttaata gttgataaaa      6720
     tagggtgatc caaaattgta tcagacatta ggaagtcata ctgatcaatc tttaattgta      6780
     taaattcctt gtatgtaagc agttkcatcc attcttcttt atcaaatcca atataattgt      6840
     ttttgtgctg ctgcatccaa atcattggag taaattttct agatgtcgaa aatccacatt      6900
     ttattttcaa attttgagcc gcaaaatatt caaaaccaaa tataacttca tggttmtgtt      6960
     ttttctwatg gctctwtctc ttttagcttg gagtgtatcc attgaatctg aatgttatta      7020
     amaaactgaa attagttact aaaatgtgt                                        7049
//
ID   Polinton-1_DEl repbase;    DNA;    INV; 16861 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   25-JUN-2021 (Rel. 26.06, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DEl.
XX
NM   Polinton-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-16861
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from Drosophila elegans.";
RL   Repbase Reports 12(4), 576-576 (2012).
XX
RN   [2]
RP   1-16861
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (25-JUN-2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1810..3606
FT                 /product="Polinton-1_DEl_1p"
FT                 /translation="MELSVACDLCSKDIELSEFEAHYAKCSMPRNAFDVLM
FT                 SNTKRKRCDLCSTLVKNYEFDAHYRNCKGPRNAFNVLMAGGNRKEHQKRSI
FT                 HLLVNRSKTPDNVLDDIPEIPANAPEDQPTTSANALKRLRAEEDKEKHQSS
FT                 NPKKGRIEQRIELLCPTCGEQYMSTRERQHMLTDKHKNASAREVKNNVNII
FT                 LLTAETKFPVKSYRIDCAVKDMIDLNEFYQQCQKNIIEIIKHCMIDYRAIK
FT                 FNLSVYGTYVKQRDDGETVSTIKHFRTAYKSLYIYEDIVNELNSAIECLLT
FT                 LSSEFQEKDSGWAIQNFDYFETTIIKLENIPASGYIQAPKKIRARNALINV
FT                 QNTDVFCFKWCILASIANKAHENASFSTPQQRKYSREKMTKPKNYNININD
FT                 EIIIYDGITLNFSGIIFPIDKLGVRHFEKNNADFSINIYEIDEAGEKIIGP
FT                 TVQTKERRPNHINILGIDNIHQNMMHYAYITNVFTLCSSQFSKAKSGGYFC
FT                 ENCLQCYHVKNTTHNKFECGKVASFYPEPNTKTSFKGYHKKLSPPVVIYAD
FT                 IEAVLESYRTCLNSPSSSSTTKVQKHTACAVSFYVVHKYNPSQNDLWTYDG
FT                 K"
FT   CDS           13627..13235
FT                 /product="Polinton-1_DEl_12p"
FT                 /translation="MHFSNIKPWVSKSNISLKAIERNDHFSLKMYAQQIEV
FT                 FLMQFEDMLFEQHLERLKYLKATLEDLEEKELIHSKFGFHYKLCPWSDDDA
FT                 TSGPDTCQCHMLPVLEKEALSLMLRYYKLSRRLYRTETFNKLN"
FT   CDS           11457..12746
FT                 /product="Polinton-1_DEl_10p"
FT                 /translation="MSNHIECMKSELDLFTPHPTQSSILRTEEVSYNPIAS
FT                 LDGASSIEFVCLGNGETYRDLSSVYLRLVVQLKKNDNNVIEGNAVGVVNNI
FT                 LHSIFRSSSVYLNNILVSQSDNNYHYRAYLQTILNYGSDASESHLASQGYF
FT                 PNFGRLTAGKYVYPATNETLKNIFQNSNKVELFGKVHGDIFNQSKLLLNNV
FT                 DLRINFNIEKTAFYLMENETESNLKILEAQLFMNHITVNPSILLAHHHVLQ
FT                 TKNALYPFSKVEVKSFTIYPGNNTLSIDNAVIGQLPNFLAFSMVKNRSYSG
FT                 NRGLDPFHFEHFKMQRFNLMVNGVQVPSQALEFDYSNAENVQSSRSYNMLF
FT                 RSTGIKHYDRGLQITKEMFDTNSFILAFDLTTDHSNSTVCSNLMSQGTIRI
FT                 EGRFSEPLSEAVTCLVYCEYDSMIDIDKHRNIRTLF"
FT   CDS           12751..13206
FT                 /product="Polinton-1_DEl_11p"
FT                 /translation="MNTLQIQQLLSKHAKTQSIFKGVFPSDQLPKTIFKYP
FT                 ALIIANTDTSDQPGTHWIAFYFNSRRSAEFFDSYGQYPQKKEFVTFLRSNA
FT                 YKYFCNKQQLQGYFSNTCGHYCMLYGLFKSKNKSLKNFLKYFKKNDFSYND
FT                 KIILKMFKSNFKK"
FT   CDS           9617..10372
FT                 /product="Polinton-1_DEl_7p"
FT                 /translation="MIKNKHSLKKVILMNPHTFQKLINNSRGNELISTKFL
FT                 PILNNNKISDFDKWLKIRQELSFYQNKKRNKSWNIQNEQKSPFMSTKTTES
FT                 QTTDWIDIKPTTSELKPKTDATLGSPESDDEDFKSNKIPNSVNVQQKFKSD
FT                 VSLPKKIEFMDLPTESDGEDFKSNKTRNLLNVKRKIRDTSFLDDKEDIKKL
FT                 AVPKIKLSDQQRKLRVKLKKIKAVSLPFQDLKYITGREKLSRSVRTKPVQI
FT                 GKNKINWISYQ"
FT   CDS           10990..11457
FT                 /product="Polinton-1_DEl_9p"
FT                 /translation="MVKSYHEYYVNQCGAGLNNIGSLYVSPRIIQQGRGIG
FT                 NFFSGLFNYIKPLFLSGITAIKNQAAETGKAVINEFGRKPLRNIIQEQSKI
FT                 ALTNLSNKAINKMTRSQNGSGKRNKKRGSRKNRSHLTSKRQGKHTHHHQKG
FT                 KKKSRKLNISDIFSKVK"
FT   CDS           8664..9344
FT                 /product="Polinton-1_DEl_6p"
FT                 /translation="MFTQFIHPFTMLICGPSGSGKTTFLENLISKKNDLFN
FT                 ISIDRIIWCYGEESAKPNFSNIEYFKGVPETIENEINEPILLILDDLMMGA
FT                 FNKNVCELFTKGSHHRNLSVVVVTQNIFHKSSHTRDISLNTKYIIAFKNPR
FT                 DKLQFQCLARQIYPENPTELFRIYKEVTEQPHGYLLIDLTQGINDLLRFRS
FT                 DIFNSEYTVCYSEENGLQKESKSLESEQTYIVCAQKG"
FT   CDS           10395..10940
FT                 /product="Polinton-1_DEl_8p"
FT                 /translation="MCYSNELFVTLLSNDSMNVFPDNVKCAFTNIVNMPQD
FT                 MNEYWEVGITDIYLNNYIYKTTTKERNIAEETEFVSLVNAETFRYSNVPVE
FT                 SKIPENGLIFIYTDIIKPRSVGCKRPRCLRVMHYNGKERNIQFKNIEYYPL
FT                 DIWSPNEISILITDSNGYKVPFETSAVPIFVTLHFRKKRRLSL"
FT   CDS           7832..8347
FT                 /product="Polinton-1_DEl_5p"
FT                 /translation="MNTPSRNSSIIVDFQYLLGNNKQVFVKELAFMPAGTV
FT                 TPNFFHFKPPFNIKELDNETLKQQHINQRNINGLDWSAGDIPYTCLEDILS
FT                 PLNKYQTVIVRGETKKSFLTKYLSTNIIDIDIGKSLTELPNFFTNCTIHKK
FT                 KIPLRCSLNNLFKLFVFLENSNYEIYSNGDTSV"
FT   CDS           7011..6091
FT                 /product="Polinton-1_DEl_3p"
FT                 /translation="MSKLQVVNEIHKPARKNFRRRKFVQKGINDTWQIDLV
FT                 EMIPFSKENGGFRYLLTVIDTFSKYAFAEPVKTKSAPDVADAMKTVFINSK
FT                 CTPKNIHSDQGKEFYNSTFGELMKKCHINHYHTYTHLKASICERFNRTLKN
FT                 RMWKMFSIQGKYKWIHKIKFLVDQYNNSYHRTIKMKPVDVCPKNEEFILKS
FT                 VYNIPKIFPKHKFSVGDFVRISKYKGVFMKGYEPNWSTEVFKVIKVKSTDP
FT                 VTYDIEDYMSVPIEGSFYEVELQKVKDKNAYLVEKILIRKKNKVFVKWSGF
FT                 DSSHNSWISVNDLLK"
FT   CDS           7721..7038
FT                 /product="Polinton-1_DEl_4p"
FT                 /translation="MDMCLTKRNKTSRKTQDHGVIFGFEYYVVHNLKLKCG
FT                 LSTSRKFSPMVWMQQSKNNFVGFDKDEWMQLLTYKEYIQLKLDQYDFLMSD
FT                 SIIDHPRMSSIKCTFRFRKSDKQYVFVINQYGNKIEFDSESWRSLLRLGIF
FT                 FTTFLCWNSILRQQVIYLYHNHIIPKCASLERLDIQLSDLDGSYDPDVQID
FT                 LTRLCFEISKKMRAEIKRDVQVYKQSLLTKQSLCSNKK"
FT   CDS           15254..14748
FT                 /product="Polinton-1_DEl_13p"
FT                 /translation="MPQYCIPMDVTVQFIDSEDEVEVPPTQDSDVIIIENT
FT                 DQEPLDASDSQDAVELVLRGVFAPATVSTQTEPIGADYGSLEWSDFPLGRT
FT                 TEEVLNQLIRDDEDDEDDDQFQCGQRFELDEAFSNSQGNTFPDDDHIFDQI
FT                 IESNPSNEYLKMMDDDEDHNLLDVLFDLGL"
FT   CDS           3699..5960
FT                 /product="Polinton-1_DEl_2p"
FT                 /translation="MQKFCTALKQKTSSLYNIYWSTPKKPSVSPIDVRAQE
FT                 GNCTACEMEINAGDLDKCYNQFTGQYVGPIHKNCKPKYKLSDPFFPVVFHN
FT                 LSKYDLHLFITKLEGELSPIPCNKELYIALTQTININSTNRYKIRYIDSVR
FT                 FLNSSLEKLASYMEDKDFKILSTKFEGEKFKQMRRKNVFPYDYIDSTEKFN
FT                 ETQLPSIDRFYNSLSDEKCSIDDYNFALKVWESFNCQTIKDYLKLYLESDV
FT                 LILADVFENFRKICQQIYKLDPVNYVTAPSISWDAMLKFTNVQLELISDGD
FT                 MYNFLKRAVRGGLTQCTQRISIANNKYLKSFDPIKPINFLSYIDANNLYGW
FT                 AMSQPLPLSGFKFLDKEEVESFDYKNISVDGNIGYMLEVDLEYPSDRHDLH
FT                 NYLPFCPENKVPPGGKQGKLIADLTDKSEYIIHLKQLQLCLEQGLIVKKIH
FT                 RVLSFTQSCWLKPYIDLNTDQRKIAENDFEKNFFKLMNNAIYGKTMENVAK
FT                 RRKVALVRHYQSRQNSPGFRQRIARHDFHSVEIFDSDLAAIESTPSKIMYD
FT                 KPIYIGVTVLELSKWLMYEFYYNFLLIKSPSTKIIYMDTDSFILSSKEDFY
FT                 QTIRDNPDRFDTSNYKLENQFNIVLANNKEPGKMKDEHAGKIMTSFAGLKA
FT                 KAYSCLVEGEGNDIECIKKIKGVKKSVIKKLNHEDYIECVRHKKTFYGAQR
FT                 VIRSRSHILYTEIVNKISLNYKDDKRYILTDNVNTLAHGHFKISHILSRDQ
FT                 TNN"
XX
SQ   Sequence 16861 BP; 5919 A; 2915 C; 2814 G; 5208 T; 5 other;
     agtagctgga atatacagga gcggggggtt tttaacggtt ttataatcag ttgaattttt        60
     tccaaatgca ttcacataca aatttcataa tcagtgtaca tgatatccga tggaactcac       120
     tcgttttatt tggtttctaa atattctcgc caaatgttcg ggccgatcct tatcgtttga       180
     gaaaatgtac gagcaagtga acccgcatac ccacgaaccc taatctcaac cccaaccctc       240
     ttgtgcgtcc tgatgactgc ttgtgcgcga aggtgtgaaa gtaagaaagg gtacgagaaa       300
     gtgaacccgc atacccacga gctctaatct caacccccac ccacttgtgt gtcctcacga       360
     ctgcttgtgc gcgaaggtgt gaaattataa ttttgatagt tttgatcaaa aagagtaatt       420
     tttaattaag agtcgtgaca agtataccat tggaaaggtc ttgaaaaatg ctttcgaatg       480
     ataccaaact tttttttttt tttttttcct ttggtgaggg gtgcatataa ttttttcggt       540
     tttcctctgt ttttggtgta gtagtgggga cttacttaac cggcggttgg gagcggcggt       600
     cgtcgggcgg cggtcgtcga gtgcggcggt tagctaagac accctaaacc cgtggtgctt       660
     gtctaggata agccggattc gctgctcccg taagtcccca ctactacccc aaaaacagag       720
     gaaaaccgaa aaaattatat gcacccccca ccaaaggaaa aaaaaaaaaa aaaagtttgg       780
     tatcattcga aagcattttt caagaccttt ccaatggtat acttgtcacg attcttaatt       840
     aaaaattact cgttttgatc aaaactatca aaattataat ttcacacctt cgcgcacaag       900
     cagtcgtgag gacacacaag tgggtggggg ttgagattag agctcgtggg tatgcgggtt       960
     cactttctcg taccctttct tactttcaca ccttcgcgca caagcagtca tcaggacgca      1020
     caagagggtt ggggttgaga ttagggttcg tgggtatgcg ggttcacttg ctcgtacatt      1080
     ttctcaaacg ataaggatcg gtccgaacat ttggcgagaa tatttagaaa ccaaataaaa      1140
     cgagtgagtt ccatcggata tcatgtacac tgattatgaa atttgtatgt gaatgcattt      1200
     ggaaaaaatt caactgatta taaaaccgtt aaaaacccgc tcctgtatat tccagctact      1260
     ttcagcttaa ggctttggga aatgtccatg gttgcaatgc aacatcttaa gcaaatgttg      1320
     accctaacct aaggacaagg ttgatacacc atcaatattt acctacaacc tgaaccctcc      1380
     tacaccacgt tcaccacccg ataacttgtt atccatcctt gtattgattt gacctctgat      1440
     atccattaga caggtgtctg ggcgggtttc tatattcaag aaccaatcgg attggttcta      1500
     ggagtaaaac atacctgtat gcactccctg tatatgtcaa actgttaagt gaacattcta      1560
     gactataaaa atgacaccac tcaaattgct caggatcagt tcttcaaatg cctcagtact      1620
     gcattctgat aaatataatt tcatccggac cggttcgaga tatcgcgtgt accaataaga      1680
     tttattttgt tacggcttaa acccctatct gtgaaaaaaa atcgttgttt aaaacaaatt      1740
     attatataaa atataaaaat atataataca atttatcaaa aaaacaaaaa aaaaaaaaac      1800
     catatcaaaa tggagttatc agttgcttgt gatttgtgtt ccaaagatat tgagcttagt      1860
     gagtttgaag ctcattatgc caagtgttct atgcctcgga atgccttcga cgttttaatg      1920
     tcgaatacga aaagaaagag gtgtgactta tgttctaccc ttgtaaaaaa ttatgaattt      1980
     gacgcccact accgcaactg taaaggaccg cgaaatgctt tcaacgtttt aatggctgga      2040
     gggaaccgga aagaacatca aaagcgatca attcatctac tagtaaaccg ctctaaaact      2100
     ccagataatg tcctagatga cataccggaa attccggcta atgctccaga ggatcaacct      2160
     acaacttcgg ctaatgccct taagcgattg agagcggagg aggataagga gaaacatcag      2220
     tccagtaacc ccaaaaaagg tcgtattgaa caaagaatag aacttttatg tcctacttgt      2280
     ggtgaacagt atatgtcaac cagggaacgt caacatatgt tgacagacaa gcataaaaac      2340
     gcttctgcca gagaagttaa aaataatgta aatattattt tgctcacagc agagactaag      2400
     tttcctgtca aatcatatcg aattgattgt gcagtcaagg atatgataga cttaaatgaa      2460
     ttttatcaac aatgtcaaaa aaatataatt gaaattataa agcattgtat gatagattat      2520
     cgagccataa aatttaattt gagtgtatat ggtacatatg taaaacaaag agatgacgga      2580
     gagacagtta gcacaataaa gcattttaga actgcataca aatctttata catttatgaa      2640
     gatattgtaa atgagctgaa ttctgcaata gaatgtttac taacattgag cagtgaattc      2700
     caagaaaaag actctggctg ggctattcaa aattttgact attttgaaac caccattata      2760
     aaactcgaaa atattcctgc tagcggttac atacaggctc ctaaaaaaat aagagcccga      2820
     aatgcgctta taaacgttca gaacactgac gtattttgtt ttaagtggtg catactagca      2880
     tccatagcaa ataaagccca tgagaatgct agtttctcaa caccacaaca aaggaaatat      2940
     tcaagagaaa aaatgacaaa accaaaaaac tacaacatta acatcaatga tgaaattatt      3000
     atatatgacg gaataacgtt gaatttttcg ggaattatat ttccaatcga taaacttggt      3060
     gtacgacatt ttgagaaaaa taatgcggac ttcagcataa acatttatga aattgatgaa      3120
     gctggcgaaa aaattattgg accaactgtt caaacaaaag aaagaagacc aaaccacata      3180
     aatatattgg gtatcgataa tatacaccaa aatatgatgc actacgccta tataacaaat      3240
     gtgtttacat tatgttcatc acaattttcc aaagccaaat cgggaggata cttttgtgaa      3300
     aattgtcttc agtgttatca cgttaaaaac actactcaca acaaatttga atgcggaaaa      3360
     gtggcgtcgt tttatccaga gcctaacaca aaaacgtcgt ttaaaggata ccacaagaaa      3420
     ttatctcctc cggtggtgat atatgccgat attgaggctg ttctggaaag ttacagaaca      3480
     tgcctaaatt caccatcatc ttcgtcaaca acaaaagtac agaagcatac tgcctgtgca      3540
     gtatcatttt atgttgtaca caaatataat cctagtcaaa acgacttgtg gacatacgac      3600
     ggtaaataga aaaaactata ttacaaatta attaactatt agattttttt aaatgattta      3660
     tttatttaaa atttatcaaa atttcaggtg atgattgcat gcaaaaattt tgtacagctc      3720
     tgaaacaaaa aacttcgagt ctgtacaaca tatattggtc aaccccsaag aaaccgagtg      3780
     tcagccccat agatgttcgc gcccaagaag gtaattgcac cgcctgtgag atggaaataa      3840
     atgcgggcga tctggataaa tgctacaacc aatttactgg acaatacgta ggtcctattc      3900
     ataagaattg taagcctaag tacaagttaa gtgatccatt cttcccagta gtttttcaca      3960
     acttatcgaa atacgatcta catttgttca ttacaaaact agagggggaa ttaagtccaa      4020
     taccttgtaa taaagaacta tatatagcac taacgcagac aataaatatt aacagcacaa      4080
     atagatataa aattagatac atagattcag ttagattttt aaactcaagc ttggaaaaac      4140
     tagcgagcta tatggaagac aaagatttta aaattcttag tacaaaattt gagggagaaa      4200
     aatttaagca aatgaggagg aagaatgtgt tcccgtatga ctatatagat agcacagaga      4260
     aatttaatga gacacaactt cctagtattg ataggtttta taattctctc agtgacgaaa      4320
     aatgtagtat agacgattat aattttgcac taaaagtttg ggaatctttc aactgtcaga      4380
     ccatwaaaga ttatttaaaa ctttatttag aaagtgatgt tttaattttg gccgatgtat      4440
     ttgaaaattt tagaaaaatt tgtcaacaga tatacaagtt ggaccccgta aattatgtta      4500
     ccgcaccatc aatatcatgg gatgcaatgc ttaaatttac taatgtacaa ttagaactaa      4560
     taagcgatgg tgatatgtac aattttttaa aaagagcagt acgaggtggg ttaactcaat      4620
     gtactcagcg tatttccata gccaataata aatatttaaa aagctttgat cccataaaac      4680
     caataaattt tctaagttat atcgatgcaa ataatttata tggatgggct atgagtcagc      4740
     ccttaccgct ttcagggttt aagtttttag acaaagaaga agtagaatct tttgactata      4800
     aaaatatatc tgttgatggt aatataggat atatgctaga agttgatcta gagtaccctt      4860
     ccgatcgaca tgacctacat aactacctgc ctttctgtcc agaaaataaa gttccgccag      4920
     ggggtaagca aggaaagttg attgctgacc taactgataa aagtgaatac ataattcatt      4980
     taaaacagct tcaactttgc ttagaacagg gtttaattgt aaaaaaaata catagagtct      5040
     tgtcttttac tcaatcatgc tggctgaagc cttatattga tttgaataca gaccagagaa      5100
     aaattgctga aaatgatttt gagaaaaact tttttaagct tatgaacaat gctatttacg      5160
     ggaagaccat ggaaaacgtg gccaagcgcc gaaaagtagc tttagtaagg cattaccaat      5220
     cgcgacaaaa ttcaccaggt tttaggcagc gcatagctag gcatgatttt catagcgttg      5280
     aaatattcga ctcagattta gcagcaattg aatcaacacc atcaaaaatt atgtatgata      5340
     aacccatata tataggagta actgttttag aattatcaaa gtggttaatg tatgaatttt      5400
     attataactt tctattaatt aaaagtcctt ctacgaaaat aatatatatg gatacagatt      5460
     catttatatt atcttctaaa gaagattttt accaaactat aagggacaat cccgaccgct      5520
     ttgatacctc taactataag ctagaaaacc aatttaatat agttctggct aataataaag      5580
     aacctggaaa aatgaaggac gaacatgccg gtaagattat gacttctttt gctgggctta      5640
     aggctaaggc atactcttgt ttagttgagg gagaaggaaa tgatatagaa tgtattaaaa      5700
     aaattaaagg tgtaaaaaaa tcagttatta aaaaactaaa tcatgaagat tatatcgaat      5760
     gtgttagaca taaaaaaaca ttttatggag cacagcgagt tattcgtagt aggtctcaca      5820
     ttctttatac tgaaattgta aataaaatta gtcttaacta taaggatgat aagagatata      5880
     ttttaactga taatgtaaat acactagccc acggtcattt taaaatatct catatattaa      5940
     gcagagatca aactaataat taataataat aaaaaaatgt gttcccatac ttgtacaata      6000
     caataataaa atgtaaaaaa aaaaaaataa taaaatacaa ataaaaaatg taaataaagt      6060
     gaaatcaaat ttattttcag tgttttatta cttaagcaga tcatttacag atatccatga      6120
     gttgtggctg gaatcaaaac cgctccactt tacgaatact ttgttctttt ttcttataag      6180
     tattttctcc accaggtaag catttttgtc ttttactttt tgaagttcca cttcataaaa      6240
     cgacccttca ataggaacac tcatatagtc ttctatatcg taagttactg ggtctgttga      6300
     cttaactttt ataactttaa aaacttcggt ggaccaattg ggttcatatc ccttcataaa      6360
     tactcccttg tatttactta ttctaacgaa atcccctact gaaaatttat gttttgggaa      6420
     tattttggga atattataaa ctgattttaa aatgaactcc tcatttttag ggcatacatc      6480
     tacaggtttc atttttatag ttcgatggta agaattattg tattgatcta caagaaattt      6540
     gattttatga atccatttgt atttaccctg aatactaaac attttccaca tacgattttt      6600
     gagggttcta ttaaatcgct cacatataga agccttgaga tgtgtatatg tatgatagtg      6660
     atttatatga cattttttca taagttcccc aaaagtggaa ttataaaatt cttttccttg      6720
     atctgaatga atgttttttg gtgtacattt actatttata aaaacagttt tcattgcatc      6780
     tgctacatcc ggtgcagact ttgtcttaac tggttcagcg aacgcatact ttgaaaacgt      6840
     atcaataacg gtcagtaaat atctaaaacc tccattttct ttactaaacg gtatcatttc      6900
     gactaaatca atttgccacg tatcatttat ccctttttga acaaattttc ggcgtctaaa      6960
     gtttttccga gcgggcttat gaatttcatt aacgacttgt agtttactca tcttaaggcg      7020
     gtggtttgct tgtattattt tttattagaa cacaatgatt gcttagttaa tagtgattgc      7080
     ttatacacct gtacatctct ttttatttca gcacgcattt tttttgaaat ttcaaaacat      7140
     aaccgagtta aatctatttg tacatcggga tcgtaggaac catctaaatc agatagttga      7200
     atatctaatc tttccaaaga tgcacactta ggaataatat gattatgata aagatatata      7260
     acttgctgtc gtaatatgga attccaacat aaaaatgttg taaaaaatat acccaatcgt      7320
     aacaaagatc tccatgactc cgaatcgaac tcaattttgt taccatactg attaattaca      7380
     aaaacgtact gcttatctga tttcctaaat ctaaaagtac actttattga agacatgcgt      7440
     gggtgatcaa taattgaatc cgacatcaaa aagtcatact ggtcaagctt caattgaata      7500
     tattccttat atgttagcag ttgcatccat tcgtctttat caaatcccac gaaattattt      7560
     ttactttgct gcatccaaac catgggagaa aattttctgg aagttgacaa gccacatttc      7620
     aactttaagt tatgaacgac ataatattcg aatccgaaaa ttacgccatg gtcctgagtc      7680
     tttcgggaag ttttatttcg tttagttaga cacatgtcca ttgggttaga gtactttatt      7740
     taaactaaaa attggttctt gtcttgcggg tatataaagg cggaagccct tgcaaactca      7800
     ctcccagtcg attaaaaaaa ctcattcaat catgaacact ccaagtcgaa attcaagcat      7860
     tatagtagat tttcaatatt tactcggaaa caataaacaa gtttttgtta aggaactagc      7920
     attcatgccg gctggaactg tgacacctaa tttctttcat tttaaaccgc cgtttaatat      7980
     caaagaattg gataatgaga ctcttaagca acaacacata aatcagcgaa atataaatgg      8040
     attggattgg tcagctggtg atataccgta tacatgtctt gaagatatac tttcaccact      8100
     taacaagtat caaacagtta ttgttcgggg tgaaacaaag aaaagctttt taaccaaata      8160
     tttatcaact aacataatcg atatagatat tggaaaaagt ttaactgaat tacccaattt      8220
     tttcactaat tgtacaatac ataagaaaaa aattccacta cgatgttcat taaataattt      8280
     gtttaagctt tttgtattct tagaaaactc taattatgaa atatatagta atggtgacac      8340
     atccgtttaa gatttagtag aaaataatta gtggacccaa cctgatcgtt aactatggat      8400
     tcccttaaaa aaatttttgg aaatgatccc cgcaaaaagg gatacatgca gcttatatat      8460
     tgtaattatt gcgcatctga tactcatttc gagaagaact gcgccaagaa acgcgatcaa      8520
     gaaaagcata aaaaagctta gtgtaataaa aataaataat ataatatcct attataaaca      8580
     aaaattaagt aaaacacttt tatattaatc ttgaataaaa taattttwaa aatatatata      8640
     tatatatacc taaaactaaa aaaatgttta cacaatttat acatccattc acaatgttaa      8700
     tttgcgggcc ctctggatca ggaaaaacaa catttttaga aaacctgatt tccaagaaga      8760
     atgatctttt taatatttca attgatcgaa ttatttggtg ttatggggag gaaagtgcta      8820
     aaccaaattt tagtaatatt gaatacttta aaggagttcc tgaaacaatc gaaaacgaaa      8880
     ttaatgagcc tattctgttg attctagacg acttgatgat gggtgccttt aacaaaaatg      8940
     tttgtgaact gtttacgaaa ggatcacatc accggaattt atcagttgtt gtggttactc      9000
     aaaatatatt tcataaatca tcgcataccc gtgatatttc actaaatacc aaatatataa      9060
     tagcttttaa aaatccccga gataagcttc aatttcaatg tttggcaaga caaatttatc      9120
     cagaaaaccc aacagaatta tttagaatat ataaagaagt aacagagcaa ccccacggat      9180
     atttacttat tgatctcact cagggaatta acgatctctt acggtttaga tcagacattt      9240
     ttaactctga gtatacggtg tgctattccg aagaaaatgg tttacaaaaa gaatctaaat      9300
     cgcttgaaag cgaacaaaca tatattgtat gtgctcaaaa aggctagcaa taaactacga      9360
     aaggcaataa taaacaatag cgatagtgaa ctggtaaaaa caatagtgga aatagttttg      9420
     aacacattac gaggaaatca taaggttact aaaacgcatc taaattccct aaaaaagtat      9480
     aaaagtgcat tgcgctacct ttcatgtcca aagcgcacat taaactctaa gagaaaagtt      9540
     cttattcaaa aaggtggatt tttacctatt ctactaagtt cgttgctctc aggagttttt      9600
     ggaaaaattt taaaaaatga ttaaaaacaa acatagttta aaaaaagtaa ttttaatgaa      9660
     cccccacacc tttcaaaaat taataaacaa ctctcgagga aatgaattga taagtacaaa      9720
     atttttacca attttaaata ataacaaaat aagtgatttt gataaatggc ttaaaattag      9780
     acaagaactt agtttctatc aaaataaaaa acgtaacaaa tcatggaata ttcaaaatga      9840
     acaaaaatcg ccatttatgt caaccaaaac aactgaatcg caaactacag attggattga      9900
     tataaaacct acgacttctg aattaaaacc aaagactgat gcgacacttg ggtcccctga      9960
     aagtgatgat gaagatttta aatcaaacaa aattcctaat tctgttaacg ttcaacaaaa     10020
     gtttaagtct gatgtatcac tcccaaaaaa gatagagttc atggacttac ctaccgagag     10080
     tgatggagaa gattttaaat caaataaaac acgaaattta ttgaacgtta aacgaaaaat     10140
     aagagatact tcgtttttag acgacaaaga ggatatcaaa aaactggcag taccaaaaat     10200
     aaagcttagt gatcaacaac gcaaattgag agttaagcta aaaaaaatta aagcggtttc     10260
     attaccattt caagatttaa aatatataac aggacgagaa aagttgtcta gatcggttcg     10320
     aactaagccg gtgcaaatag ggaaaaacaa aattaattgg atatcttatc aataacagaa     10380
     atttcaatat aaagatgtgt tattcaaatg agttgtttgt cacattgctt agtaatgatt     10440
     caatgaatgt atttcctgat aatgtaaaat gtgcatttac aaatattgta aatatgccac     10500
     aagacatgaa tgaatactgg gaggtaggca ttacggacat atatctgaat aattacattt     10560
     acaaaacaac tactaaagaa agaaatatag ctgaagaaac tgaatttgtt agcttagtaa     10620
     atgctgaaac atttagatac tcaaatgttc ctgttgaatc taaaatacct gaaaatggat     10680
     tgatttttat ttatactgac ataatcaaac caaggtctgt aggttgtaaa agacctcgat     10740
     gtcttcgtgt aatgcattat aatggaaaag aaagaaatat tcaatttaaa aatattgaat     10800
     attatccttt agatatatgg tctccaaacg aaatctcaat actaattact gattcaaatg     10860
     gatataaggt tccttttgaa acttcagctg ttccgatttt tgtaactcta cactttagaa     10920
     aaaaaagaag gttaagccta taaataatac ataccccaat gatgtttaat tagaacaaga     10980
     atagtcatca tggtgaaatc ttatcacgaa tattatgtga atcagtgcgg tgccggacta     11040
     aataatattg gcagtctgta tgtgtctcca cgaattattc agcaaggacg aggaattgga     11100
     aattttttta gcggtctttt taattatata aaacctcttt tcctttcggg tataactgct     11160
     ataaaaaatc aggctgcaga gactggtaaa gcagtaataa atgaatttgg ccgaaagccc     11220
     ttaagaaata ttattcaaga acagagcaag attgcgttaa caaatctctc aaataaagca     11280
     ataaataaaa tgacacgctc tcaaaatggt agcggaaaaa ggaataaaaa gcgcgggtcg     11340
     agaaaaaatc gttctcattt aacttctaaa cgacaaggta aacataccca ccaccatcaa     11400
     aaaggaaaaa aaaaatcaag gaaattgaat attagtgata ttttttctaa agtaaaatga     11460
     gtaaccatat tgaatgtatg aaaagcgaac tagatttgtt tacaccacac cctacgcaaa     11520
     gttctattct aagaactgaa gaagtctcat acaatcctat tgcatccttg gacggcgcct     11580
     cctcaattga atttgtttgc ttgggaaatg gtgaaacata tcgagactta tcaagtgttt     11640
     atttacggct tgtggtgcaa ctcaaaaaaa atgataataa cgtcattgaa ggaaacgctg     11700
     tcggtgtagt aaacaatatt ttacattcaa tatttagaag ttcctcagtt tatttaaata     11760
     acatattagt atcgcagagt gataataatt atcattatag agcttatttg caaacaattt     11820
     taaactatgg aagtgatgca tcagaaagcc acttggcttc ccaaggctat ttcccgaatt     11880
     ttggaagatt aacagcagga aaatacgttt atccagccac taatgaaact ctgaaaaata     11940
     ttttccaaaa tagtaataag gtcgaattat tcggaaaagt tcatggtgat atttttaacc     12000
     aaagcaaact gcttcttaat aatgtagatc taagaattaa ttttaacatt gaaaaaacag     12060
     cattttattt aatggaaaat gaaactgaat caaatttaaa gatactagaa gcacaactct     12120
     ttatgaatca tataacagtt aacccaagca ttttattggc tcatcatcat gttttacaaa     12180
     caaaaaatgc tttataccca ttcagtaaag tagaagtcaa atcttttaca atatatccag     12240
     gcaacaatac actatcgata gataacgcag ttattgggca actacccaat ttcttggctt     12300
     ttagtatggt taaaaaccgc tcatactcag gaaaccgagg cttagatcca tttcatttcg     12360
     aacattttaa aatgcaacgc tttaacctaa tggttaacgg agttcaagtt ccctcccagg     12420
     ccttagaatt tgattactcg aacgctgaaa atgttcaaag ctctagaagt tataatatgc     12480
     tattcagatc gactggaata aagcattatg atcgtggtct acaaataacc aaggaaatgt     12540
     ttgatactaa cagtttcata ttagcctttg acctaactac tgatcattca aattccactg     12600
     tatgctcaaa tttgatgtca caaggcacta tacgaatcga aggaagattt tcagaacccc     12660
     taagtgaagc agttacttgt ctggtatact gtgaatatga ttccatgatt gatattgata     12720
     aacatagaaa tattcgaacg cttttttaaa atgaatactt tacaaattca gcaattgctt     12780
     tccaaacatg ccaagacaca atcaattttt aaaggagttt ttccgtcgga ccagctaccc     12840
     aaaaccattt ttaaatatcc tgctctaatt attgcgaaca ccgacacttc agatcagccc     12900
     ggaactcatt ggattgcatt ttattttaat agtcgcagat cagcagaatt tttcgattca     12960
     tatggacaat atccccagaa aaaagaattc gtaacatttt taagatcaaa cgcttataaa     13020
     tacttttgta ataagcaaca actacaggga tatttttcta atacctgcgg tcactattgc     13080
     atgctgtatg gcctttttaa aagtaaaaac aaatcactta aaaatttctt aaaatatttc     13140
     aagaaaaatg acttctcata caatgacaaa ataatactta aaatgtttaa gtccaatttt     13200
     aaaaaataaa attcgagttt ttaaaagata attaatttag tttattaaat gtttcagttc     13260
     gatacaatcg tcggcttaac ttataatatc taagcataag actaagggct tctttttcta     13320
     atacaggcag catatgacac tggcatgtgt cagggccaga cgtggcatca tcatcgctcc     13380
     agggacaaag tttgtaatgg aatccaaatt tagaatgaat tagctccttt tcctccaaat     13440
     cctccagagt agcctttagg tatttaagcc tctccaagtg ttgttcgaaa agcatgtctt     13500
     caaattgcat caagaagact tcaatttgtt gagcgtacat tttaagggag aagtggtcgt     13560
     ttctttcgat tgctttaaga ctgatgttgg atttagaaac ccagggcttt atattggaaa     13620
     aatgcattta tttctctttc ttatttactg acaaaaattc tatttgcgca caactatatc     13680
     tatttacatc ttttccttta tatattatat gagtaattcc gttctcattt aatttcctat     13740
     aaggtgtctt agtacaaaat ttgtttacat aacttttagg taaaaatatc caaacatctt     13800
     tgttgtcctt gtctgttaaa taaagagcta ctttggttcc atatggtgtc tttttcaact     13860
     tgcatccagt gatcttatac tcgaatccaa tacatagatt ttcaattttt gtataaccaa     13920
     tcacaggctt caattcgttc aatgtctcta agaagtccta agaaatcaac aaaaattact     13980
     ttatgattta tttatcgtca atatatatgc ataccatttt tgaacagcgc tagttttgat     14040
     tcgatgtgct ctagtaccta acagttgtgt actaattgat ttacctaaga ttacttggtc     14100
     ttttatacta tccagaacat gcaaaatata ccgatatctt ttttctcttt tatacataca     14160
     tatatacaca aacacaataa aactaaaaca cataactatg ctatattttc atatatactt     14220
     tattatagct atctctatct ttaagaaata gttacaaaaa aacatatacg aaacatagtt     14280
     caaactatgt aatgctttca tgtttacatt attatatcta tctctttttt aaataagtaa     14340
     atagttacaa aaaaaatgta cccatgaccc tatataagac aacattttta aagaaaactc     14400
     agtttatatt ttttaaatta aaatgaggaa gttcctttgt gagttgtgtc cagaaacaaa     14460
     atcgtttact agacgcatag gcctcaaaaa tcatatctta aagttacata actttaatta     14520
     tcaaaaatca agaacgtcat attattgctg ttatttctgt ccaaaagtac aaacattctg     14580
     gttgcgatat gattataacg ctcatctcct gttgaagcac gatgcagtct taaaaagcat     14640
     tcgcaaggca caagaaaatt atcaaataaa gaaaaaacaa ttttaacaac tgcatttttg     14700
     taaaaggttt tttatttatt ataatttttt tttcaacatg gaaattacaa tcccagatca     14760
     aataaaacgt ctagtaggtt gtgatcttcg tcgtcatcca tcatttttaa atattcgttc     14820
     gaggggttgg actcgatgat ctgatcaaag atgtgatcat catctggaaa cgtattgcct     14880
     tgagagtttg agaaagcttc gtccaattca aatctctgtc cacattgaaa ttgatcatcg     14940
     tcttcatcgt cttcatcgtc ccgtattagt tgattcaaaa cttcttcagt ggtcctcccc     15000
     aatggaaaat cgctccactc aagggagcca tagtcagctc caataggctc cgtttgggtt     15060
     gacactgtag caggcgcaaa cacgcctcgt aggaccagct caaccgcatc ctgagagtcg     15120
     gaagcatcca gaggctcctg atctgtgttt tcaataataa ttacatccga gtcttgggta     15180
     gggggtactt ccacctcgtc ctcggagtca atgaattgca cagttacatc cattggtatg     15240
     cagtactgag gcatttgaag aactgatcct gagcaatttg agtggtgtca tttttatagt     15300
     ctagaatgtt cacttaacag tttgacatat acagggagtg catacaggta tgttttactc     15360
     ctagaaccaa tccgattggt tcttgaatat agaaacccgc ccagacacct gtctaatgga     15420
     tatcagaggt caaatcaata caaggatgga taacaagcta tcgggtggtg aacgtggtgt     15480
     aggagggttc aggttgtagg taaatattga tggtgtatca accttgtcct taggttaggg     15540
     tcaacatttg cttaagatgt tgcattgcaa ccatggacat ttcccaaagc cttaagctga     15600
     aagtagctgg aatatgcggg agcggggggt ttttaacggt tttataatca gttgaatttt     15660
     ttccaaatgc attcacatac aaatttcata atcagtgtac atgatatccg atggaactca     15720
     ctcgttttat ttggtttcta aatattctcg ccaaatgttc gggccgatcc ttatcgtttg     15780
     agaaaatgta cgagcaagtg aacccgcata cccacgaacc ctaatctcaa ccccaaccct     15840
     cttgtgcgtc ctgatgactg cttgtgcgcg aaggtgtgaa agtaagaaag ggtacgagaa     15900
     agtgaacccg catacccacg agctctaatc tcaaccccca cccacttgtg tgtcctcacg     15960
     actgcttgtg cgcgaaggtg tgaaattata attttgatag ttttgatcaa aaagagtaat     16020
     ttttaattaa gagtcgtgac aagtatacca ttggaaaggt cttgaaaaat gctttcgaat     16080
     gataccaaac tttttttttt tttttttcct ttggtgaggg gtgcatataa ttttttcggt     16140
     tttcctctgt ttttggtgta gtagtgggga cttacgggag cagcgaatcc ggcttatcct     16200
     agacaagcac cacgggttcg gggtgtctta gctaaccgcc gcctgacgac cgccgcaccc     16260
     gacgaccgcc gctcccgacc gccggttaag taagtcccca ctactacmcc aaaaacagag     16320
     gaaaaccgaa aaaattatat gcacccctca ccaaaaaaaa aaaaaaaaaa aagtttggta     16380
     tcattcgaaa gcatttttca agacctttcc aatggtatac ttgtcacgac tcttaattaa     16440
     aaattgctct ttttkatcaa aactatcaaa attataattt cacaccttcg cgcacaagca     16500
     gtcgtgagga cacacaagtg ggtgggggtt gagattagag ctcgtgggta tgcgggttca     16560
     ctttctcgta ccctttctta ctttcacacc ttcgcgcaca agcagtcatc aggacgcaca     16620
     agagggttgg ggttgagatt agggttcgtg ggtatgcggg ttcacttgct cgtacatttt     16680
     ctcaaacgat aaggatcggc ccgaacattt ggcgagaata tttagaaacc aaataaaacg     16740
     agtgagttcc atcggatatc atgtacactg attatgaaat ttgtatgtga atgcatttgg     16800
     aaaaaattca actgattata aaaccgttaa aaaccccccg ctcccgcata ttccagctac     16860
     t                                                                     16861
//
ID   Polinton-1_DEu repbase;    DNA;    INV; 13644 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   09-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   Polinton DNA transposon from Drosophila eugracilis: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DEu.
XX
NM   Polinton-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-13644
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 996-996 (2012).
XX
RN   [2]
RP   1-13644
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-FEB-2022).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   [2]: sequence updated.
XX
SQ   Sequence 13644 BP; 4532 A; 2255 C; 2130 G; 4725 T; 2 other;
     agtagtatgt aaacgctggt tctggcacag atttatgggc tattaagctg tcacattagt        60
     gataaaaaca tggtttcccc caccccgaaa cccattatcc gtcgtctcct gtgataagga       120
     ttccccctca cccttttagt cagtatggat tctggcacag aaatcataaa cccataaatt       180
     atagttttta aaatcagtgc acgtgttcaa agaagtaata aaatgtgacg attgtgtcat       240
     gattagtttt ccgacccccc tatccgtaat ttgggaatat tgaaatgtat tcctgaccct       300
     aattaggagg attgggaacg tcttaagggg ttgaattttc tcaaaacaca ctgtcaattt       360
     ctatatatgt aagcctctgt ctacgtgtgt gcgtgtgtat ggttgagtgg gaaccccaga       420
     tgtgtgtgga aacatgacat gtggaaccga tgaggaagat ccattccaac acatagataa       480
     aaaggacaca cattagtgat taaaacatgg tttcccccac cccgaaaccc attatcagtc       540
     gtctcctgtg attaggattc cccttcacca ccccgcaggc ccttttagtc agtatggatt       600
     ctggcacaga aatcataaac ccataaatta tagtttttaa aatcagtgca cgtgttcaaa       660
     gaagtaataa aatgtaacga tatggagaac cgatatacgt tcatggacgc accataataa       720
     aattgtataa taaaattgtc aagtgcatag tcaagtataa gtcaatgttt caagttgttt       780
     attcaaattt cagatttttt agatttcagt aagtaaggag aaaagggata caagtaacgt       840
     tgcagtaatt gttttctgag aacatgtttc taagatattt ctagtagcta gaacatagga       900
     cataggctga ttataataca tcagttttat gtttagctga attgatttta aaattttaaa       960
     tacttatatg cacggatact cggtatgtat gtgtgcgcct gagtcaggta ttctataaga      1020
     tcctccctcc attggttttc tgaaagacat gaccctttgc tatctcttgg gcgagtccac      1080
     ctgggaactc acccctaccc tcaagtgtgc gctcgggtct gcttgtgcgc ggagctgcga      1140
     actcacccca accctcaagt gtgtgctgat atctgcttgt gcgcggaggt gtggaaattt      1200
     atttttaagc gttttaatga aaagttgcag tttttaactt acaatcgtat aaagcatact      1260
     attggaaagg gcttgaaaaa tgctttccaa tgacaccaaa cacaccaaac gtaatgtaat      1320
     gatcttggac tcctatgacc tatacccgaa atatagaaat tggaaagcat tttgtctgaa      1380
     ttctctggat ctgagcggaa aagtctccaa gctaccggaa ttacacaagc gaactctgga      1440
     gtttacccaa taccgcaagc agcttgaggt tccgttcgtc gtgtacgccg actttgaatg      1500
     tgtactggag cccagaaata ttgaagtaag cccaaaatta ttcaatttaa actctcatat      1560
     acctatagct tatgcttatt atataatatt aagtgtgcct ttgattctaa gctagataaa      1620
     tttgtaataa aaacaggtag taacgcagga tcaaattttg tagactctct tgtacaattt      1680
     taaaccaatc ataatgactc ctgaagacga gtttgaattt caggattcat taaattgtca      1740
     tatttgtaaa aaaatattat taaatgatag agttagggat cattgccatt taacaggttt      1800
     atttaggggt gcagctcatt ctaaatgtaa cttggagtat agactatgta aattatacca      1860
     gtgtttttcc atattctgaa ttctctggat ctgcggatgc tgctctaaga cataagactg      1920
     ttattatata aaattaagtg tgcctttgaa tctaagctag ataaaattgt aataaaaaca      1980
     ggtagtaacg caggatcaaa ttttgtagac tctcttgtac aattttaaac caatcataat      2040
     gactcctgaa gacgagtttg aatttcagga ttcattaaat tgtcatattt gtaaaaaata      2100
     ttattaaatg atagagttag ggatcattgc catttaacag gtttatttag ggtgcagctc      2160
     attctaaatg taacttggag tatagactat gtaaatttat accagtgttt ttccataatt      2220
     tttctaagta tgattgtcat ttatttattg aagacttggc taaaattcct gatagtatta      2280
     atgcaatccc agtaaataaa gaacaatata tttcggtgtc caaaaccata aaaacttcaa      2340
     atggaaacaa tttcgaaatt cgatttcttg acacattcag atttatgcca tcaattttag      2400
     atacccttgc ttctaattta attgatgatc agttaaatac agtaaaaaga ttttttaaaa      2460
     atgaaataga attcaggctt atgcgtaaaa agggtatctt tccttatgaa tatttagatt      2520
     cagctagtcg actggaggaa acttccctac catcaagagc agcattctat agtaacttga      2580
     cagaaaagga atgctctcaa gatgattatg aacacgcaca taatgtctgg tcacaatttt      2640
     ttttgttcaa gtctaaagga ttatctagag ttgtatttaa aaactgatgt tttcctattg      2700
     actgatatat ttgaaaattt tagaaaaata tgtttacaaa tttattcatt acaccctcag      2760
     ttgctcagtt tttactacac caggtctatc ttgggcagcc atgttaaaga ccacaaatat      2820
     tcaactagag ttattagtag ataatagcat tcgagggggc ttagtacaat gttgtcatag      2880
     atatacaaag gcaaataaca aatacttaac agattttgat ccaacaaagg aatcatcctt      2940
     tataatgtat ttcttccgtt ttgtccgtca aatagttttg catctaaaga ggataaagtt      3000
     aaaaaattaa tagctgacct cgggaacaaa aaaattatgt aatccattat agaaatttgc      3060
     agcaatgcat acaaaatggg ttaatattaa aaaagattca tagaggggtt cgctttttgc      3120
     aaaaaccttg gctaaagact tatattgact taaatacttt acatagacag aatgccaaga      3180
     ataaatttga aaaagatttt tttaaattaa tgaacaactc ggtctatggg aaaactatgg      3240
     aaaatcctga aaaacgtgta gaggttaaat tggtaactac atgggagtct acagatgttc      3300
     ataaactcgg tcggaaaaaa cattgtgcta aaaatttaat ttcaaaattc aattttcata      3360
     gtgcaactaa aataaatgac gagttctatg ccatccaaat gaaaaaactt tctgtggtat      3420
     ttgataagcc aatgtatttg ggttttgctg tattggactt atcaaagtgg aaaatgtatg      3480
     attttcatta ccaatacatg aaacccaaat ttcaagaaaa tttagtttta aattacatgg      3540
     atacagactc atttatctat actataaaaa ctgatgattt ttataaggat attcgtggtg      3600
     atattgaatc aaaatttgat acatccgatt attcagatag aagaatcgat ttatataatt      3660
     ttaaaaaagt taataaaaag aggttaggat attttaaaga tgagttgaat ggaaaaccaa      3720
     tgagtgaatt tataggtcta tgctccaaag tttatagtta taaaatagat gaagttgaaa      3780
     actcttataa taaagcaaaa ggtgtgagtt ccagaaattt aactatggat cattataaaa      3840
     atgtattact cactggaact ccactatatg gtagtaggac aatgtttaga tcaagggcac      3900
     acaaaatatc aacaaatagg gtatataaga atgtgctttg tgctaatgat agtaaaagaa      3960
     aacgtaaaca taatgaaaca gagtttgcaa tgttaaatca cgatgatcat ggtactctat      4020
     caataaaaca taaaaggtta atggaaaagg acattgtgga tagtatcaat ttcttagaac      4080
     ttgaaaatat atttttaaga gatataataa atgggagaaa tacagatgtc aatacattaa      4140
     atgaacttag agataagcaa gtaaacatag aacaagaatt attttataag tcaattgaat      4200
     tggaaatgtt ttattttgat cgagattgtg gtaaatataa gtaaaacaaa aataaattgt      4260
     aaaaaacata taatatttta ttaaaattgt tagtatacac attataaaat tgtacattta      4320
     tacgtatgta aatatattta ttaaatttaa ttatatatta taataagaaa aaaaaaataa      4380
     taataaaaca aaaataaaaa ttaaatatta cattgtcttt taatttggta tttgtactat      4440
     aaaatttcat ctttatttac ccagctggct tcgtccattg gaaagccaag ccattttacc      4500
     aaaactttat cacctcttcg ctttaaaatt ttctcaacta gaaatgtgtt cgggaattca      4560
     gtctttttga gttcttcttt ataaaaccca ccctgaatcg gattaccttt ataatcttca      4620
     agtaagtatg ttttggggaa tgtattgttg acttttctaa ttttaaagat ttctgttgta      4680
     taattcggtg tatacccttt ttcaaacaca tgtttatact tgctgatacg aacgtgatcg      4740
     ccatttcgta gtttactctc aacatatatc tttatgtgat tatatgagtc ttgtaatatt      4800
     tgtttttcat tagttgtgtt gacactgatt gggctcattt ttatggttct atgtacccta      4860
     ttattgtaat caaatatcaa atttttgtaa atatctatcc acttatattt cccattgaaa      4920
     ctaaactcac gccacattga ctctttgagt gttctattaa aacgctcgac aattgatgcc      4980
     ttaagagtgc tgaacgtcga ataatgattt atatcataac gtttcattaa ttgtttaaat      5040
     tttgtattaa aaaactcttt tccatcatct gtttgtaaat tttttggtgt tccatgacct      5100
     gattttaaga ttttctccat tgcttgggaa acatcattgg cattttttga ttgtagtgct      5160
     tcaccccaag caaatttaga aaacgtatca attacattta ataagtaacg ataacccttg      5220
     ttagatgttg aataaccccc catttcaacc aaatctgctt gccacagatc gtttattccc      5280
     ttcgtaatga ctcgtcttcg ttgaaaatgt ttacgagacg gtccgtgcaa ctcatttaca      5340
     attgctcgtt taatcatatt cttcgaatgg tgtataggct acaccttcta tttcaattgt      5400
     tgtctttttt ggtatcgctg tcggttttgt tacatactta aaaatatagt cctcaataac      5460
     ttttatcttt tcaagaactt tctcaaatat ttgatcagta ctatctgctc tcttgttata      5520
     gacctctatt ttattttcaa gatttgaaat ttttgtaagt cgacgattaa tactttgact      5580
     tacaagtttt cttaggtctt cccccaactt tctgacacac tcatctgtat attgttttgt      5640
     ggtcaagtca ttatcatcta agggcttaat agcgtttttg actcttttat tttgagcgtt      5700
     tagattacca tcagtatcaa ttaaaaaagt ttcatttaat ttaacacctc tttttaaatg      5760
     atctgatcgc tccctatcat tagaaaaatg tccaaacttg tcaacagaca tgatgattat      5820
     aaataaaaat cttttttgtg tttaatatat atactctaat taaacaataa ttccctcctc      5880
     tcgcagttcc tctactattg agaaaatctc attattgtga ttgttgttac ccgctgtttt      5940
     tgacgccact aaaatttgta accgttcgac tagttcattc acatcattcc aatatatata      6000
     atttggtttt gattcctcag atcatataac cgacccacga agtggagtgg atgttgtagg      6060
     attttcatta tcgtttatta tttttttaat aattttagta tatttaaatg cgcgggaacc      6120
     tttaattcga ttattcacgt tataacctaa tctgtgaaca tttgtttcca atataatatt      6180
     tttatatgtt ttcaaatcat gatcattata attttggggg tgtttatgaa atataagaga      6240
     gtacagacca ggagttagct cgcaactcat tccactagac aaatgaatct tattatcatt      6300
     aatttttagt tcactattcc ctaatgttaa tacattatct aaactttttt taggtccgta      6360
     agccttgtcc aatatatttt cccgactcaa atgactgata ttaaaatcat aatttttatt      6420
     atctatctcg tcttctatat ttatatcttc cctcatttca ttttcttttg taggcattga      6480
     tatagcttcc ggctcactcc ctttgtccac atcatcatta tatgtttcgc ctttctttcc      6540
     tttttcaaaa acatttgttt gtgaaaagaa atcattatac aaatcactat cattcataga      6600
     tcggtattga gataagtttc gttttgtctg atgttgtctc ccattggttg tatagtacag      6660
     atcatcgtca tctgtcatat cattctcata cttttcattt tcgtataatt cacgtttaac      6720
     cttggctcct acatttgttt ttaaaaatgt ttgcttttta ttttcgttaa caagttcatg      6780
     taaaggttct gtaataggtt taaatgtttc ctccaactct ataacacttt gattctttac      6840
     atgttttagg tcatcaaact ttctcttcaa ggcagatctc gcttttgtta actgagctaa      6900
     cacattcatt attgaaacct gcataaattt agataaagta aattttaaaa attatataat      6960
     ctttatgtaa tcactcttca gttactcgat ctatactgtt tactggaaac tataacttct      7020
     aatatttata tccacccatc catcccatga aataaaaaat gtattgttta tatagatttt      7080
     aaaattgtat ttattcgacg taacataaaa gtttttttat ttatttattt tttatatttt      7140
     atttacttat ttctaaatat aaattatcat tctttttatg aatattaaat ttcccatcaa      7200
     ccatttcctc aataaattcc tcccgaagat gtgtatacct ttccggggtg tatagaaagt      7260
     aatcctccaa ctccagaaca agggattttc caatcttcgt ccttttacac tccgccttga      7320
     agatggggaa ctttacattt tcaggcatcc ttgcctttga caaaatagat ttcttattac      7380
     atctattgaa ttcttgagtt accgtctcaa gctttattcg ttttgcatta ttttcaacat      7440
     caattggtat gaacgctgtt tctgcggcat catctttttc atcgttcttc tcgttgaaat      7500
     aacaaaccaa acttgtcgga ttaacaggtg tcttcctatt atcctcgtca gtaggatcga      7560
     attcgacttc tgtagtctcc tcgttcttat agttgttgtt ctccatgttc attttgttat      7620
     atatatgttg ctttttgttg tttagcagtt gttttttgtt gtttagcagt tgttttttgt      7680
     tgtttagcag ttgttttttt gttgtttagc attgtttttt tttcacttgt acaacgtctg      7740
     ttgaatgtaa agtcgaaact tggactgtga attttgaagt aggcagcccc gatttttata      7800
     ccatccagaa gtcacacata caaacgtata tacgacacat ttgtttcacc ctccctccac      7860
     gtcctaagtg taagccaatc aaaacgatgg gttattgact cactccattg acaaaggaaa      7920
     gtagaaatga aagacataaa tgaccacagt tgtatgtatc aaaatgttga actctctcgt      7980
     agttgtattg tatttgtttt cccaaatact tgacaacttc tataggtggt tgtagatttc      8040
     cgaaactatc aaaatgatgt atatcatttt tatttttgtt atatgcgacc caatgtgtac      8100
     cacttgattg tgaatcatct aggtttacta taccacattc tcgaattctt ggagagcgtg      8160
     gaagtaaatc ctcatatata ctcctcgaaa atttggtata tatttttgag caaaagttga      8220
     atgtctatat ttgaaagtgg tctattgggt agctgacata ttagtttttt cgcttcttac      8280
     catatccctt actatatggt tttaggtaga atccataacc tgttctatac ggtttgagat      8340
     ataacccttc tcctacagca acactttcaa tttttctatt atgtcgtttc ttctcctcca      8400
     tatcctcttt cgccattcta gcgttgttta ttgtttttgc aattgcggca cttcccgcct      8460
     accggcgggc agtacgattg gtaaaaaacc accagttttg ggtcattaat tattctggtc      8520
     tttcactttt tctttgaacc cattgtcgat tgaactgatt ttcgtgcaat tttaattgca      8580
     ctcataatgt ccaatggctt ttgtttttta atgttctagt agcagcgtta ataacagtcg      8640
     acagattcgt catctttact tttttcctcg tcgtcttccc tttacatttc ttttttgttt      8700
     ttgatatccc cattccaaat tttttctttg ctttcataat gttggtcacc aaatatgctg      8760
     ctgctttttc accaagagta ctgtctggtg cttttacacg tgaccaagct ttgtcaatta      8820
     atatagagtc tgcaatgtga cgttcatgta aatccttttt atgggaatat gctatatcat      8880
     gttctttaca agcctcatcc agtttattta ttccttgatc acctcgtttc aaacgttttt      8940
     ctaactgtgt acccggccca caaaatttat atcctggtat atgggcttca aacggtaatg      9000
     tattaattaa gttgttgaca agaccaccac ctcgtttaca attgaaaaca ctaatgaatc      9060
     gattataaaa acgcttcccc attatattga tgtttaatca tcaaagattt ctcatcgaat      9120
     gaggtacata agctttaaga atgcgtttaa taagtcaaaa acaaaaaatt atcgttagaa      9180
     atatcaacga tgaaaacgag aaaaaacaac ccccacgaca tagttctctc ttacctaata      9240
     caataagagc tcttattgtt ggaccttcaa attgtggtaa aaccaacatt atgctcagtt      9300
     tgatagagag tccaaacgga ttgaaattcg aaaatattta cgtgttttct aagagtttat      9360
     atcaacctaa atatgagtac ttggaaaaat taataaaacc tattaaagga atgggatatc      9420
     atactttctc tcataacgat ggtgtattag accccagtga agcaaaaaat aattctatta      9480
     tgatatttga tgatgtagct tgtgaaaaac aagacaacat aagatcttat ttttgtatgg      9540
     gtcgtcataa gaatattgat tccttttatt tatgtcaaac atatacccat atacctaaac      9600
     acttgattcg tgataatgca aactttataa taatgtttaa acaagatgat ttaaatatgc      9660
     gacatatata tagagatcat attaatacag atatggggta cgacacattc gtggaaattt      9720
     gtaaaaaatg ttgggaggat aaatttggat tcttgcttat aagtaaagat aacgatatgg      9780
     ataatggaag atatagaaaa ggttttgatc aatttatttt gatttaaaaa agttattgga      9840
     tttggtataa aaatagatta aaaataaaca tttccacagt ttaacaacag atttcattat      9900
     gtctagatca gtgaccttgt ccttgaatgg aaatagttct gttataaata caaactattt      9960
     tccaccaatc gaattggatg gacgttttga gtgtgcatta attgatttta atatgtacaa     10020
     ttcaatccca aatatagacg aaaaaacaat ctcttccata ttggaactaa tgtaatcacc     10080
     attcctactg gatcctatga actaaatgat ataactgatt atatttataa aaaacttaaa     10140
     gattatggta ttgaaaaatc ttttaaaatt aaaagcaata acaatactct tcaagtggaa     10200
     ataaccagta ctcgggagcc ggtttacttt aataaggaaa gatcaattgg ccaacttttt     10260
     ggttttgata aaagagtttt agagcctcac ccaacaaaaa catatctatc ggatcagact     10320
     gtcaatattt taaaaattaa tactattcgt ttggaatgta acataattag tggttcatat     10380
     gtagataata cacctaatca tacgttacat gaattcggta ttaatgttcc tcctggctat     10440
     aaaatgaatg tgacaccaca taatcttatt tacttgccaa tcaactgtga tgaaataagc     10500
     acactctcca tacgcatcgt tgatcaaaac ggagatttgg taaatttacg tggtgaaaac     10560
     gtttcgattc ggttgcatat tcgcatgata gaatgattat ttataataaa agacctggtt     10620
     catacactca accaagcatt actaattgta aagctataga aagaggatct actcwaaaaa     10680
     gaagttcact tactttaaaa aataaattat ttttaaagtc tctaggcttc aaagttaaaa     10740
     attattaaaa atatactgga agaaaaaaaa tgaacgaaat tttaaatgtt cgagaaaaag     10800
     tttactcgga tgagagtatt tcgaaaaaag agtttcatac ctattcgtcg tataatcaaa     10860
     catttaaacc aaacgatgaa attcgaatta ctatccaaaa tcaagacttg tatgtgctcc     10920
     ctcatgaaag ttacctcaac tttcaaggaa ttattagaca agatacaaca gtcggtccta     10980
     caactgataa tgttacaact ttttttaaaa ataattgtat ggcttacttc ttggatgaaa     11040
     tcaagtacga aataaatgga tgcgagattg atagaactcg atttgtcggt atgacaacta     11100
     ctcttaaaaa ttttttatca cttgataacc ttcaaagtca aaatctatca aattcttcct     11160
     tactttaact tttctgtccc attaaaaaat ttattggggt ttgctgaaga ttataaaaag     11220
     gttttgttga attgtaaaca tgaacttgtg ctaatgctaa ctaaaaacct agatgatgtc     11280
     tttgaaaaaa agagattgga acaaacattt aaattagaaa tgaccaatat aagttggaaa     11340
     attcctcatg tgacacctag tgacattgca aaaattaaga tgtatgatat tattaaaagt     11400
     ggtgtaaacc tacctattgc atttcgtagt tgggactcct acgttaaccc gaaattagga     11460
     caaggaacac accactgttg gaatgttaaa ctttcagcaa atcgggagag acctaggttt     11520
     gcaataatcg gatttacact gaacggaaaa cttgtcacaa ataatttatc aaacttgaag     11580
     gttcatttaa attctgactc atacccatat gataatttaa atgtcgactt caataagaat     11640
     cagtttgctc acctatatga aatgtattca agatttcaat ctagttacta caatcgtgag     11700
     tcacaaccat ttttaacacc atcggaattt aaaatgaaag ctccaattat cgtaattgat     11760
     ctatcatatc aaaatgaaac agtaaaatct ggtcctattg acgtgagaat ttcaactgaa     11820
     ctgaagacac caagtgacga aaatacccaa gcttattgcc tactcataca cgatcgatta     11880
     gtcgaatata atccattaaa cggattagta caacgagttg tttgatattg tttaaaaatg     11940
     attaaagata ttatatcaat tgatattcaa ggtttctttg acaataacaa taaatttatt     12000
     cttaaagaaa ttggaatagt agttgaaaag gaaccaaaat ttattcttaa agaaattgga     12060
     atagtagttg aaaaggaacc aaacttgaat aatagtttta ttatagaacc accatatgat     12120
     ttcactttat taaatacaaa atctcaaacc actgcaaact ggttaacaaa aaagcatcat     12180
     aaaatttgtt gkaacgatgg aggcgaaagt tttgcgcaaa cgcgacgata tcttaaggca     12240
     ataactattg gaaaaaaatt atctgtaagg ggatggaaaa gaaacgtttt ctacaatcgt     12300
     tttttggaaa ccaccatttg attaatgtcg aggacataca ttgtccgtca ttaaaccggt     12360
     ttagaggaaa cagatttccc tattgtaaaa atcatgtcaa aggtggtgtt tgtgctttaa     12420
     acaatgcata caacattcta aattttttta aaagtagttc aaaataaatg aaacatatct     12480
     atttgcattc aattcatttt gaagttgaga ccacttgtga caagacctgt ttcacaaaaa     12540
     aatatttcaa taaataatgg aatttcttga agaaattgat aatttttttc tacaattcaa     12600
     tgggaagata tttgaaaatc atttccaata ccttcttaaa accaaaatta tgttcatgaa     12660
     tcaaggtgct caagatctaa aaacaatgaa atatggtgaa cactttacat tctgtaacac     12720
     cgattcgagg ttggaaacat gcgcatgcct cttttacgta aatcgaagga atggagctag     12780
     aaaaataatt tcattgtatc aataattaat aaataaaagt attatgtgaa acgaaaaaaa     12840
     aaaacttgtt ttcttacttt ttatgaataa gggaagggaa atacatatat atagactcac     12900
     ttgcacacgt acacatatac actcatctat tatgatgtac actacccccg gaactcaacc     12960
     gcattcagcg cgtgcgcaac gggtgccgta acatgctctt acaagatgtt tacaaatcag     13020
     atgcacgcgt gtgaagtgac cctttattag gagtgaaatt acttagcgct gtgaaacaat     13080
     gactacacac acaaaaacca caacctcttg tatccttttt atctatgtgt tggaatagag     13140
     agagaaatac taaaacacac attttattac ggtgcgagca tggatcttca tcatcggttc     13200
     cacatgtcag gtttccacac acatctgggg ttcccactca accatacaca cgcacacacg     13260
     tagacagagg cttacatata tagaaattga cagtgtgttt tgagaaaatt caacccctta     13320
     agacgttccc aatcctccta attagggtca ggaatacatt tcaatattcc caaattacgc     13380
     ataggggggt cggaaaacta atcatgacac aatcgtcaca ttttattact tctttgaaca     13440
     cgtgcactga ttttaaaaaa ctataattta tgggtttatg atttctgtgc cagaatccat     13500
     actgactaaa agggtgatgg ggaatcctta tcacaggaga cgacggataa tgggtttcgg     13560
     ggtgggggaa accatgtttt tatcactaat gtgacagctt aatagcccat aaatctgtgc     13620
     cagaaccagc gttctcaacc tact                                            13644
//
ID   Polinton-1_DGr repbase;    DNA;    INV; 16383 BP.
XX
AC   .
XX
DT   28-SEP-2011 (Rel. 17.07, Created)
DT   23-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   Polinton-type DNA transposon from Drosophila grimshawi:
DE   consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DGr.
XX
NM   Polinton-1_DGr.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-16383
RA   Jurka J.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 12(7), 1180-1180 (2012).
XX
RN   [3]
RP   1-16383
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (23-FEB-2022).
XX
DR   [3] (Consensus)
XX
CC   >98% identical to consensus.
CC   [3]: sequence updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           848..2206
FT                 /product="Polinton-1_DGr_1p"
FT                 /translation="MFNNKNNNVNTMEGFNYVSRNNSAQGQSHPNYFDHLT
FT                 YVANTGMPANPTHSICNNNNIITNPTANSTSTTNNPTHSIFNNNSITLNPI
FT                 TTSTSPIINSVTTATTNTSSIINSVTTTNNINSVTNNTNSVASNIICNGVP
FT                 NQARVCTACNIQIASSKWSAHLRSNAHKMLVFTPVNSQVKLISSGFKNRIS
FT                 TFSFENKHKNVVDPTEFLGEAAQETLPLIHNVLLTHTACKMNIELFAEYIK
FT                 FTDDELLMTIKSHQSNMSVITASSDLGETIKDHSAIICVKMDEFQEKDSGW
FT                 TLSQILRLEVNINKYTPLKVSSFIETPKVLRNKKALINVKNADEFCFKWAL
FT                 ISALKAPANNQPARCSAYKVDAIESDVIQIDGALTLNFSNLDFPLPLDQIK
FT                 IFEAQNQNISINVFGFDEQSNAVNGPLYVTEMEKNTHISLMLLESEERGHF
FT                 VWIKNLSR"
FT   CDS           2371..4905
FT                 /product="Polinton-1_DGr_2p"
FT                 /translation="MHEEHRQQCGKVVSTLPAEEKASLSFKNFSRSLDVPF
FT                 VVYADFECVLTPLNSQLSENVIATSQHIPIAYSYYIKCAFNPTLDKLVLET
FT                 GVDAGVKFVKSLIRDVNDIYTCYLSTIKPINMSADDEFRFRNAAICHICEK
FT                 TLGNDRVRDHCHLTGLYRGAAHNACNINFQIAPFVPVFFHNFSKYDSHLFV
FT                 RELNKVEGDIKVLPLNKELYISLSKFIHIASHDKNLEIRFLDTFRFMASSL
FT                 DALSSNLDIASFNNVKAFFPLDDEFHLIRRKGVFPYEYIDSESRLDESALP
FT                 PRDKFFNSLSNTECSVEDYSHAQKVWSVFGCQSLKDYMELYLKTDVLLLSD
FT                 VFQNFRAICKKIYSLDPAHYYTTPGLSWDAMLKTTKIELELLTDINMYRFI
FT                 QNGIRGGLVQCCKRYSKANHMYMENYDSTKPSEFLMYLDANNLYGWAMSQY
FT                 LPYSGFRWMNDAELNAFDISSIKDNSESGYILEVDLLYPDSLHDYHNDLPF
FT                 CPSNQKPTSEAKVKKLVADLRSKIKYPIHYRNLQQCLRNGLVLTKIHKILE
FT                 FKQSPWLKKYIDLNTYHRTLAKNNFEKDFFKLLNNAVYGKTMENVEKRKDI
FT                 KLVTSWETTNRNRLGARALIAKANFHSSAQFAEDMYAIQMNRLHNVYDKPM
FT                 YLGFTVLELSKWQMYDFHYDYMKPKYQEKVSLNYMDTDSFIYSIETKDFFK
FT                 DIAEDVEMRFDTSDYPEELSKKYGIRRCNKKVLGMMKDENNGKRMLEFVGL
FT                 RAKMYSLSLEGGGCIKKSKGVKKSALDKLTINSYKQCLFEKKTFCDSMLMF
FT                 RSKIHNLYTHRIRKTTLSSRDDKRKIKEDGINTYAWGHYRISS"
FT   CDS           7089..6175
FT                 /product="Polinton-1_DGr_3p"
FT                 /translation="MSRRNLIEELHAPARKNFKRRRVIMKGIDDHWQADLV
FT                 EMRQYSSSNKGYKFLLTVIDTFSKYAWGQALKTKSAKEVERAFSGILKENR
FT                 IPKNLQTDDGKEFFNTDFKSLCRKHNINHYSTFSGLKASIVERFNRTLKEM
FT                 MWREFSYNGTYCWITIYKQLINEYNRKHHRTIQMSPVDVNSLNENKLLNTA
FT                 YNHIKIFNGSKFHVGDYVRISKHKHTFEKGYTPNWTTEIFKINQIQNTNPT
FT                 TYILEDYQGAVLKGGFYNEELRKTRFPNTYLIEKIIRRRKDRVLVKWLGFS
FT                 NDQNSWININEVL"
FT   CDS           8855..7884
FT                 /product="Polinton-1_DGr_4p"
FT                 /translation="MNEHILKELTKTRNALKRKFQSIKLGRAANEYQLEET
FT                 FKPITQPLQKIVTGNILANQLMKVKKEEEKGQVNSRNEIKSDENFSSIAEY
FT                 YDALEKGISELQTEDLSLAPSEESYNKPDTISSKDYNQTKEITDEIFNLSL
FT                 NDLDRQKKLDKAFGPTKKSGQIILGSSKISIYHKKIELESGEKWNLTPGLY
FT                 SLIYLKDPKGYDETDLDVYQKILSKTNAHRKNHLPDGPLKGNRSKKYTQII
FT                 KKLFSKNDNPSAMSTPLNKKSMHQGGSFMTLSSTKPNYVYWDDPNEIVARL
FT                 KLLVGSQAAGNTNHNNEIVSIVEELREAKIIY"
FT   CDS           10388..11071
FT                 /product="Polinton-1_DGr_6p"
FT                 /translation="MRLIKQKTNIEVRNIDFKNGEDKQIRHSRLLPNSIRA
FT                 LIVGPSNCGKTNVMISLIESPNGVKFENIYLYSKSLHQPKYEYLKTLVNPI
FT                 KGMGYFTFSENESVLAPSKAKKNSIMIFDDVACEKQNNIRAYFCMGRHNNI
FT                 DAFYLCQTYTRIPKHLIRDNANLIIMFKQDELNMKHVYQDHVGVDMKFDEF
FT                 KNICQFCWKEKYGFVLISKDDPLENGRYRRGFADFIRI"
FT   CDS           11963..13144
FT                 /product="Polinton-1_DGr_8p"
FT                 /translation="MTNLLTVREKPYSDESIIKKEYHSYSPYLQSFKSNDE
FT                 VRITIQNQDLYVLPSESFINIEGLISLANNNAPTGGGKLKNNCMSYLFDEI
FT                 RYELNGIEIDRTRFVGTSTTLKNYISLNKPESRMLENSGWFNGNEKLVPND
FT                 GYFNFSIPIKYLLGFCEDYNKVLLNCKHELILLITKNMDDVYHPKIGSIEY
FT                 KLNITNITWKVPHITLSDEKKLLMLNITKNGGSLPLAFRSWDCYLNPTLAE
FT                 GTHHVWNVKLAANRERPRFAIIAFILDNKLIQNQLRNLKVYLNSETYPYDD
FT                 LNINFSRERFATLYDMYANFQASYYMKQSEPLLTPKEFKEKAPIVVIDLTH
FT                 QNESVKTGPIDIRVSIELESASVRNTKVYCLLMHDRLVEYSPLTGLVQRIV
FT                 "
FT   CDS           11128..11817
FT                 /product="Polinton-1_DGr_7p"
FT                 /translation="MTTTLTLTGNSSILMANYHPPIELKGNYECALIDFHM
FT                 YNSIPNVDHDNNLFHIGEHVFEIPVGSYELSDIRNIIIEKMEEKEPNKLKH
FT                 PLIESNNNTLQVMISTKEHPIYFNKTNTIGQLFGFNKKVLTPNSIHISDQP
FT                 VDILKVNTIRIECNIVSGSYVNAESSHVLHEFALNVPPGYKMSEKPHNLIY
FT                 FAVNTREIQSLKIRIVDQDGNLVNLRNESVTLRLHLRERK"
FT   CDS           10319..9507
FT                 /product="Polinton-1_DGr_5p"
FT                 /translation="MVVRFYKSTSSKSQLYRGRGLINKIINSLPIELHIPG
FT                 YQFCGPGTKLESRLERGEKGINPLDAACREHDIAYASHKDLRNRHIADSNL
FT                 AERAWERVKASDSSLGERAAAYFVTNIMKAKKKFGMGLKQREYKKPCEKKK
FT                 KFMHAVRVATRALKKEKPYDIQSAIKIAKKAINKTFGRKKNEVIIPRVISV
FT                 PKVGGFLPLIPIITALGALGGLASGGASIAKSINSAKNAKKELEENKRHNR
FT                 KMEAIALGNGLYLRPYQKGYGISTDFPKNF"
FT   CDS           14353..15024
FT                 /product="Polinton-1_DGr_9p"
FT                 /translation="MDTLQLRKSRNSRKIQDHEIIFGFEYFVNLQLKLKCG
FT                 FSTTRRFTPMVWMQQHKRNFIGFGKEEWIQLLTFKEYIQLRLEQFEFLMPD
FT                 ALIDNPKIESIKCHFKIRKSDKQCILILNQYGNKIEFDSESWRAFIRLGIF
FT                 FTSFLCWNTLLKNQICNIYNNYIIPKCSKMGKYDVQLLDLNVSYGHEAEID
FT                 LTRLCFEISRKMGKEIKKDVNQYRQVLQKKVTQV"
XX
SQ   Sequence 16383 BP; 5436 A; 2822 C; 2762 G; 5361 T; 2 other;
     agtagtaggg aaatggggat tctatgacag gaagcaggtt attgcttttt cgatttttaa        60
     ttgcttcatt ataggagcta atttattgtt tttgggtggg ggagtgacag gtgtgtgacc       120
     ttttttagga aaatgtgtga ttttggatca cgtatgagac atttatgatc gaagggtata       180
     gatttatggc tgaccctttt tttattgtgg gttggtatga ggtggaggat cactcagcag       240
     cactagtgtg tgcgtacgtg attgtggttt taagggggat attgtgtgcg aggcgtgtaa       300
     cctgtaacct gtgtgccaga atcaggtgga ggatcactca gcagcactag tgtgtgcgca       360
     cgtgattgtg gttttaaggg ggatattgtg tgcgaggcgt gtaacctgta acctgtgtgt       420
     tagaatcaag tggaagatca gctagcagct ggcgcactgc tgtggatgtt catgatttga       480
     ttattgaggg tgggtgcaat gatcagtgga aaggtaatgc tcgcttctct tttgtcactt       540
     ttttgtcaat gcatagaact catacgagac ctcacacctg aatgttttcc cacacaataa       600
     ttaaagtatt attggtgaaa actgttgtta agtaggtact tcgcacgtac gtttgccacg       660
     tgctggtacc ttcttcgtgt gtttggttct cccctcgggc ttcatatctg tgcacctgcg       720
     ggcttcatat ctaacatttt ggattctgat ttctaaaacc ttagtagttt tcaaactcta       780
     caatcgtcaa ctcgtgtgtg ttgtgccctc aaagtttaaa acaaaaccat caaaacaacc       840
     aattaaaatg ttcaataata agaacaacaa cgtgaacacc atggaaggat tcaactatgt       900
     ctcccggaat aactcggctc aaggacagag ccaccccaat tatttcgacc acttaactta       960
     tgtggctaat acgggcatgc ccgccaatcc aacccactcc atctgtaaca acaacaacat      1020
     cattaccaat cccaccgcca actccaccag caccaccaac aatccaaccc actccatctt      1080
     caacaacaac agcatcactc tcaatcccat caccacaagc accagcccca tcatcaactc      1140
     cgtcaccacc gccaccacca acaccagctc catcatcaac tccgtcacca ccaccaacaa      1200
     catcaactcc gtcaccaata acaccaactc cgtcgcttcc aatatcatct gtaatggagt      1260
     accaaatcaa gccagggtct gcaccgcatg caatatacaa attgcatcat caaagtggag      1320
     cgcgcatctt cgttccaatg cccacaagat gctcgttttt acgcctgtaa atagtcaggt      1380
     gaaattaatt tcgagtggat ttaagaatcg gatctcgaca ttctcatttg agaataaaca      1440
     caaaaatgtg gtcgatccaa cagagtttct gggtgaagca gctcaagaaa ctcttccatt      1500
     aattcataat gtattgctaa ctcacacagc atgcaaaatg aatattgaac tctttgcaga      1560
     gtatattaaa ttcactgatg atgaattgct gatgacaatt aaatctcatc agtctaatat      1620
     gagtgtcata acagcgtcta gtgatctggg agagacaatt aaagatcact cagctataat      1680
     ttgtgtgaaa atggatgagt tccaagagaa ggacagtggt tggacactct cgcaaatctt      1740
     aaggctggag gtaaacatca ataaatatac tccactcaaa gtttcaagct ttattgaaac      1800
     gcctaaagtg ttgaggaata aaaaagcatt aattaatgtt aaaaatgctg atgaattttg      1860
     ctttaaatgg gcattaatat cagcccttaa agcaccagct aacaaccagc ctgcacgatg      1920
     ctcagcatat aaagttgatg cgattgagag cgacgtgata caaattgatg gagcactgac      1980
     gctcaatttt tccaatttgg atttccctct tccattggat cagataaaaa tttttgaagc      2040
     tcaaaaccaa aacattagca tcaatgtttt tggtttcgat gagcagtcca atgctgttaa      2100
     cggaccatta tatgtgacgg agatggagaa gaatacgcac ataagcctta tgttgctgga      2160
     gagtgaggag cgcggacatt ttgtgtggat aaaaaatttg tcaaggtaat atttaataaa      2220
     tactttttcc aaaaaaaaaa aacaaaattt ttaatacaaa tatatttgtt ttttttttat      2280
     acttccagac ttgtaagacg ccaacttaca tcgcacaaga cgcagttgta cttctgcaag      2340
     acgtgcttga atttttccca taatgcgcgg atgcatgaag agcaccgtca acagtgtggg      2400
     aaggttgtgt caacgctccc tgccgaagaa aaagcaagtc ttagttttaa gaattttagt      2460
     cgtagtttag acgtaccttt tgttgtatac gcagattttg agtgtgttct aacccccctc      2520
     aattcgcaat tgagtgagaa tgtaatagca acttctcagc atatccccat agcttattcg      2580
     tactatataa agtgcgcctt taacccaaca ttagataagc ttgttctaga aactggggta      2640
     gatgcaggtg taaaattcgt caagtctctt atcagagatg taaacgatat ttatacttgt      2700
     tacctaagca ccatcaagcc cataaatatg agtgcagatg atgagtttag gtttagaaat      2760
     gcagccattt gtcacatctg tgaaaaaact ttaggcaatg atcgagttag ggatcattgt      2820
     catttaactg ggttgtacag gggtgcagcg cataatgcct gcaacattaa ttttcaaatt      2880
     gcaccttttg ttcctgtatt tttccacaac ttttcaaaat atgattctca tttgttcgtt      2940
     agggaattaa ataaagttga aggtgatata aaagtactcc cccttaataa ggagttgtac      3000
     atatcacttt caaaatttat tcatattgca tcccatgata aaaaccttga aattagattt      3060
     ttagatacgt tccgtttcat ggcatcaagt ctagatgcac ttagtagcaa tctagatata      3120
     gccagtttca acaacgtaaa agcctttttc ccattagatg atgaatttca tctaatacgt      3180
     aggaaggggg tatttcctta tgagtatatt gactcagaga gcagattaga tgagtcagct      3240
     cttcccccaa gagataaatt cttcaacagt ttatctaaca cagaatgttc agtcgaagac      3300
     tattcccacg cacaaaaagt ctggtcagtt tttggatgtc aaagtcttaa agattacatg      3360
     gaattgtatc ttaagactga tgttctttta ctgtcggatg tctttcaaaa ttttcgtgca      3420
     atttgcaaga aaatttattc attagatccc gcccattatt acactacacc cggtctctca      3480
     tgggatgcaa tgttaaagac cacaaaaata gaactggaat tattaactga tataaatatg      3540
     tataggttta ttcaaaatgg tattcgtggt ggattagttc agtgctgcaa gcgctattcg      3600
     aaagccaacc atatgtatat ggagaattat gacagcacta agccatcaga attcctgatg      3660
     tatttagatg ccaataattt atatggttgg gcaatgtcgc aatatctccc atattccggc      3720
     tttagatgga tgaatgatgc agaattgaat gcatttgata tttcatctat caaagataat      3780
     tcagagtctg ggtacattct cgaggtagat cttttgtatc cagactctct tcacgattac      3840
     cataatgatc tacctttttg cccatcaaac caaaagccta cttcggaggc taaagttaaa      3900
     aaacttgttg ctgaccttag gtcaaaaata aagtatccca tccattatag aaatcttcag      3960
     caatgtctta gaaatggctt agtattaacg aaaatacaca aaattttaga gtttaagcag      4020
     tctccctggc ttaaaaagta catagactta aatacatatc atagaacact agcaaaaaat      4080
     aattttgaaa aagacttttt caaattatta aataacgctg tctatggaaa aacgatggaa      4140
     aacgtagaaa aacgtaaaga catcaaacta gtcacatcgt gggaaaccac taatcgaaat      4200
     agattgggtg ctcgtgccct cattgcaaag gctaatttcc atagttcagc acaatttgca      4260
     gaagatatgt atgcgattca aatgaatcga ctccataatg tgtatgataa gccaatgtac      4320
     ttaggtttta cagttctcga actgtcaaaa tggcaaatgt acgattttca ttatgattac      4380
     atgaagccaa agtatcaaga aaaagtttct ttgaattata tggatacaga ctcattcata      4440
     tattctattg agactaaaga tttctttaaa gacattgcgg aagatgtaga aatgagattt      4500
     gatacatctg actatccgga ggagttatca aaaaaatatg ggatcagaag gtgtaataag      4560
     aaagttttgg gaatgatgaa agacgaaaac aatggcaaaa gaatgttgga gtttgttggt      4620
     cttagagcca aaatgtattc attgtctctt gaggggggtg gatgcatcaa aaaatcaaaa      4680
     ggcgttaaaa agtctgcgtt agataagttg actataaata gttataagca atgtctattt      4740
     gaaaagaaga cattttgtga tagcatgttg atgtttagat ctaagattca caatttgtat      4800
     acgcacagaa taagaaaaac aactttaagt tctagagatg ataagagaaa aataaaagaa      4860
     gatgggataa atacatatgc ctgggggcat tatagaatta gttcatagta gtagtaagaa      4920
     aaaaaaaaaa ataataataa taatattaat aataaattaa ttaattaata aacaagcaat      4980
     aaaaaaaaaa aaatgttagt aaaagtaagt gaaaaaaaaa aatgtaaata aaattaagaa      5040
     gaaaaaaaaa aaaaaataaa aataaatgaa tatttaaaac aaaaaataag tacatctgtc      5100
     tcttttactt caatttatgc aagctgaaaa tgtagggtgt tgatatgaac aaaaaaggaa      5160
     aagtagaaat accaaatata tatatatata tatatatatg tgtgtgtgtg tgtgtgtttg      5220
     tgtatctgtt tgtgcctgta tttagaaatg cagtgtacct gtaaaaaaaa aaaaaaaaaa      5280
     aggagaagat aaacacaaga ctttagggtt caagtgtgtg cttgtgtacc tgcgtgtgtc      5340
     tatttaaaaa tgcactgtac ctgaataaaa agaagaagat gataaagaca tgattttagg      5400
     ttgaacatat atgcatttta tttgaattca tgaagctgaa aataaagtgt atatgtgtgt      5460
     atgtatgtgt ggaataaata ataacacaaa gaaatatgta ttttgtaatg tttttttatt      5520
     tattcattta aatgtgaatt aaagatgaaa tacaatttga tttgacttag tattaagata      5580
     atttgtattt attattatta ttattgttat tgttaaatat ttttaataaa acttaaaaat      5640
     tctattgaat tttcgagatc accstcagca tcgaaaattt tctttatatc ccattcctca      5700
     gcaatgggct cctcgaaaag aagctcatcg aaggtgggct ccatcctttg tccctcctcg      5760
     gttatatcga tgaggaaggt ttccgagtcg tcgtcaacct tttgcttctt gttgatcgaa      5820
     gcgtcctcct cctcctcgat tttccgtttc tctctgggtg aaatttccaa gagctcaagc      5880
     cattccgatg gactcagctg tcccaattga aaattcattg aattctcctc gtcgtccatg      5940
     aaatagaaga gctcctgaat gttcttcgac atctttttga atgagatact tgtattcaag      6000
     acgctctttt atatccgaaa ttccctacac tgagtacatt cgtttcatac ataaattaac      6060
     cgaaacctta gtgcacaggt ccgaaggttt aaaggaaatt actgacaggt tcatcacaaa      6120
     tcaatactgt tcatgaaatt ttaacctatt gatagtacac acacgtacga tttatagaac      6180
     ttcattaata tttatccaag agttctgatc atttgagaac ccaagccatt taactagaac      6240
     tctatctttt cgacgcctta ttatcttttc aatcaagtaa gtgtttggaa atcttgtttt      6300
     cctcaactct tcattataga aacctccttt cagaactgca ccttgatagt cttccagtat      6360
     gtatgtagtt ggattggtat tttgtatttg atttatttta aaaatttcag ttgtccagtt      6420
     cggtgtatac cccttttcaa atgtatgttt atgcttgcta atacgcacat agtctccaac      6480
     atgaaattta ctaccattga agatttttat atgattgtag gcagtattca acaacttgtt      6540
     ctcatttaac gaatttacat caacagggct catttgaatt gttctatgat gttttcgatt      6600
     gtactcattt atcagttgtt tataaattgt aatccaacaa tatgttccat tataactaaa      6660
     ctctctccac atcatctcct taagcgttct attaaaacgc tcaacaattg acgccttaag      6720
     accactaaaa gttgagtaat gattgatgtt atgttttcta cacaaactct taaagtctgt      6780
     attaaaaaat tcttttccat catcggtctg taaattcttt ggaattcgat tctccttaag      6840
     tatacccgag aatgcgcgtt caacttcttt cgcagatttt gttttcaatg cttgtcccca      6900
     tgcatatttc gaaaacgtat caataactgt caatagaaat ttatatcctt tattcgatga      6960
     tgagtactgt cgcatttcta ctaagtctgc ttgccaatga tcatcgattc ccttcataat      7020
     aactcttcgg cgtttaaaat ttttacgggc tggtgcatgt aattcctcta ttaaattcct      7080
     cctactcatg attatctttt tagttatttt tcttcatatt tagctttact ttaattttta      7140
     tttttattta tttgtattta ttttataaac gagaacaagg cctgcttcct tttgaaaagt      7200
     gctgtctgca gaacattttg aaacagtttg tatttagtac caatgctttg accattttcc      7260
     gtatagtctt ccaccaagtg gaaattactt tactctttat tccgctcatt tgagaaatgt      7320
     ccgaacttgt taacggtcct ataggttata actcatggca cacacaagac accttattta      7380
     tctattttat tatcgaatct taaagagtct atatttaatt ttatattttg attttcaccg      7440
     ttaaataaac ttcttaatga ctctatttgc gaattaaaat tcgtttgtaa agaactttct      7500
     gattttttca agagttcttc cacctcaatt ttatttttat taatctcatg aagaattgta      7560
     aatgatattt cacttattgt tttctgatcc gactgatctt ttccttttaa aagtttttca      7620
     aagctctcca ttgtttcttc tacttttctt tctaaaaaga ctttagtaac cgcatcatta      7680
     tcttccaagg gttcacccac attcttaaga cgtttgtttg aaaaaataat gttctgatca      7740
     ccatcaagta gaacaccagc aatttgtttt tttacacttg atctttcttt ttcattgctt      7800
     gatgagaaga agtgaccaaa cttgtcaaga ggcattttga tattactaaa ttattgttca      7860
     tcacagtatt atttatttat tcaataaata atttttgcct cacgaagttc ttcaactatc      7920
     gaaacgattt cattattatg attagtgtta ccagctgcct gtgagccaac taaaagttta      7980
     agtctagcaa cgatctcatt tggatcatcc caatatacat aatttggctt agttgaactg      8040
     agtgtcataa aacttccacc ctgatgcatg gatttcttat ttagaggtgt agacattgca      8100
     cttggattat cattttttga gaaaagtttt tttattattt gagtgtactt tttagaacga      8160
     tttcccttaa gcgggccatc aggtagatga ttttttctat gggcattggt ttttgataag      8220
     attttctgat atacatccaa atccgtttca tcataacctt taggatcttt caagtaaatc      8280
     aaagagtata atccaggagt aagattccac ttttcaccag attccagctc aattttcttg      8340
     tggtaaatag atattttaga actacccaaa ataatttgtc cacttttttt agtaggtcca      8400
     aatgctttat cgagcttttt ctgacgatct aaatcattta aactaagatt aaagatctca      8460
     tcagttattt ctttcgtttg attatagtct ttactactaa ttgtatcagg tttattataa      8520
     ctctcttcgc ttggtgctaa cgataaatct tctgtttgaa gttcagatat tcctttttcg      8580
     agtgcatcat aatattcagc aatactacta aagttttcat cacttttaat ttcattccta      8640
     ctatttactt gtcctttctc ttcttccttt tttactttca tcaactgatt tgctaatata      8700
     ttccctgtaa caattttctg aagcggttgc gttattggct taaacgtttc ctctaattga      8760
     tattcatttg cggctctacc taatttaata ctttgaaatt ttctttttag tgcgtttctt      8820
     gtttttgtca attctttcag aatatgctca ttcattttta attaaaaaac caacagatct      8880
     aaaccgaaaa acacctttat aggtggtttc tggttttcga gcggtttgat gcagtttatc      8940
     acgtggttaa tcacggtttt ttatgtggtt ttcatacagt ttaatgcggt tttcatatgg      9000
     tttccgatgt aaacaataca cccactctaa tcatactaaa gatagtataa ctatgtatca      9060
     tttttatata ctaaaataaa ataaaatata atctgatttt tattcattaa tttatttaaa      9120
     gttgaataca agctaattta aatcagcaga tttatgctgc agtaatagaa atcttaaaca      9180
     taagtgtcca cagttaaaag aaccgaatcg ttgaacttgg ttataattgt attttatatt      9240
     ctctcccaaa tatctaataa gctctaaagg tggcggtaaa tttccataac tatcaaaata      9300
     tctgatttgc ttatctgctt tgtagtaagc tacccaatgc gttccagctc cagttgaaat      9360
     gtccaagtta acaataccac attctctttt ccgtactcgt tttggtaatg agtctctcat      9420
     aaatacacct cggaaaaagg ggatatgttt gtgagcaaaa ctcaaaatgt ctatgtttga      9480
     gagcggctta ttaggtagct gaattaaaag ttttttggaa agtcagttga tataccatat      9540
     cccttttgat atggtcttag atagagtcca ttgcctaaag caatggcttc catttttctg      9600
     ttatgtcgtt tattttcttc caattctttc tttgcatttt tagcactatt aatactcttt      9660
     gcaatagatg caccgccaga ggcaagtcca cctaatgctc cgagtgctgt tataatgggt      9720
     ataagcggca agaagccacc aactttcgga acactaataa ctcgagggat tattacttca      9780
     tttttctttc gcccaaaagt cttgtttatt gcttttttag cgatttttat cgcagattga      9840
     atatcataag gcttctcctt cttcaatgct ctggtagcca ctcttacggc atgcatgaat      9900
     tttttctttt tctcacatgg ctttttatat tctctttgtt tgagtcccat gccaaatttt      9960
     ttctttgctt tcattatgtt ggttacaaaa taagctgcgg ctctttcccc aagactacta     10020
     tcagaggcct ttacacgctc ccacgctctt tcggccaaat ttgaatcagc tatatgccga     10080
     tttctcaaat ctttatgact agcatatgct atgtcgtgct ccctacaagc agcatctaat     10140
     ggatttattc ccttttcgcc tctttccaaa cgactttcta gcttagttcc tggaccacag     10200
     aactgataac ctggtatatg tagttcaatt gggagggagt tgattatttt attgatgaga     10260
     cctctacctc gatagagctg tgatttgcta ctagttgatt tataaaagcg cactaccatt     10320
     ttaattgatg tttattcttc aaagacttgc aagagagtaa cgatctgctg agagaagtgt     10380
     atctgatatg agattaataa aacaaaaaac gaacatagaa gtgaggaata tcgattttaa     10440
     aaatggagaa gacaaacaaa ttagacatag cagattatta cccaattcaa ttagagccct     10500
     aattgttgga ccttctaatt gtgggaaaac aaatgtaatg atcagtttga ttgaaagccc     10560
     aaatggagtg aaatttgaaa atatttattt atattcaaag tctttacatc aaccaaaata     10620
     tgaatacttg aaaacactcg tgaacccaat aaaagggatg ggatatttta cattttccga     10680
     aaatgaaagt gttctagcac caagtaaagc caaaaagaac tctataatga tttttgatga     10740
     cgttgcttgt gaaaaacaaa ataatattcg tgcatacttc tgtatgggac gacataataa     10800
     cattgatgcg ttttatttat gtcaaacgta tacacgcatc cctaaacatc ttattcgtga     10860
     taatgcaaac ctaataataa tgttcaagca ggatgaacta aatatgaaac atgtgtatca     10920
     agatcatgta ggcgtagata tgaaatttga tgaatttaag aatatatgtc aattttgttg     10980
     gaaggaaaaa tatggttttg tacttataag taaagatgat cctctagaaa atggacgcta     11040
     tagacgggga ttcgctgact ttattagaat ttgaaatata atatgaacaa atctcattat     11100
     tagttcactt agcaataatc gctcgaaatg acaacaactc ttacattaac gggcaacagc     11160
     tcaattttaa tggcaaacta tcatccaccc attgaattga agggaaatta tgagtgtgca     11220
     ctcattgatt tccacatgta taactcaatt ccaaatgttg atcacgataa taatttattt     11280
     catattggag aacatgtttt tgagatacct gttggatcat atgagcttag tgatataaga     11340
     aatattatta ttgagaaaat ggaggaaaaa gaaccaaata aattaaaaca ccctctcatc     11400
     gaaagtaaca ataatacgct tcaagtgatg atttcaacta aggaacaccc tatatatttt     11460
     aacaaaacga atactattgg tcaattattc gggtttaata aaaaagtact aacaccgaat     11520
     tctatacaca tctcagacca gcctgttgat attttaaaag taaatacaat tcgaatagaa     11580
     tgtaatattg taagcggatc atatgttaat gcagaatcaa gccatgtatt gcatgagttt     11640
     gctttaaatg tccccccagg ctataaaatg agtgagaagc cacacaatct tatttatttc     11700
     gcagtgaaca cgagagagat acagtcgtta aaaatacgga ttgttgatca ggacggaaat     11760
     ttagttaatt tacgtaatga gagtgttaca cttcgcctac atttaagaga gcgaaaatga     11820
     ttatttataa taaaaatgta tgctatcctc cattatcaaa cactttgagt tatactgcag     11880
     aagaaagaag gtcgttaagg acaacactta caacagagaa caaattgttt ttaaggtcat     11940
     tgggtttaag aattagagag caatgactaa tttattaact gttcgagaga aaccctattc     12000
     ggatgagagt ataatcaaaa aagaatatca tagctactct ccttatctac aatcatttaa     12060
     gagtaatgat gaagttagaa tcacaatcca gaatcaggac ttatatgtgc taccgagcga     12120
     gagttttatt aatattgagg gcttgatatc tttggctaat aataatgcgc ctactggagg     12180
     tggtaaactg aaaaacaatt gcatgagtta cctttttgat gagattcgat acgagttgaa     12240
     tggaattgaa attgatcgaa ctagatttgt tggcacttca acaaccttaa aaaactatat     12300
     ttctttgaat aaacctgaaa gtcgaatgct tgagaattct ggttggttta atggaaacga     12360
     aaaactcgtg ccaaatgatg gatattttaa tttctctatt cctattaaat acctacttgg     12420
     attttgtgaa gactataaca aagtcttatt aaattgtaaa catgaactaa tactactcat     12480
     aactaaaaac atggatgatg tatatcatcc taaaattgga agtattgagt ataaattaaa     12540
     tataactaat attacatgga aagtaccaca tattactctc agtgatgaga agaaattact     12600
     aatgttaaat ataacaaaaa atggaggctc actaccacta gcattccgca gttgggattg     12660
     ttatctcaat ccaacactag cagaaggcac tcatcatgtg tggaatgtaa aacttgcagc     12720
     caatagagaa cgcccacgtt tcgctataat agcctttata ctggataata aattgattca     12780
     aaatcaattg cgaaacttga aagtgtactt gaactctgaa acttatccct atgatgattt     12840
     gaatataaat tttagtcgtg aacgatttgc aactttgtat gatatgtatg caaatttcca     12900
     agcaagttac tatatgaagc agtctgaacc gttgttaaca cctaaggaat ttaaggaaaa     12960
     agcaccgatt gttgttatag atctaacaca tcagaatgag tctgttaaaa caggaccgat     13020
     cgatatcaga gtttccatcg agttggagag tgcaagtgtg agaaacacta aagtatattg     13080
     cctgcttatg catgatcggt tagttgagta ttcaccatta acaggattag ttcagcgcat     13140
     tgtttaaatc aattcgatgg agaatcaagt agttgttgac attcaaggat tttttggaaa     13200
     ttgcgacaat tttatattaa aagaaattgc tcttgttttt aagaatggtt attatcatga     13260
     tattcattac cttataagac cgccatatga ttttcttaga ctaacgaaga aggcccgtaa     13320
     aacggcaata tggttaacta gaaatcaaca caatctctgt tggaatgatg gaaatgatag     13380
     ctttttagaa gtcagaaact atcttcgtga gcttctcaaa gatatgagag taatcacaaa     13440
     gggagataca aagaaaaact ttcttgaaaa gtttctaaag acgtgtgtaa tcaacattga     13500
     agactttgga tgtccacgat tagatgcgat gaaattaaat gttttctccg attgtgggtc     13560
     ccatctaaat aaaggagtat gtgccctaag aaacgcacga gttgtattag attttattat     13620
     aatctgtaat ttaaatgtga tgtaaaccca ttggctaaat tgagtaaagc aaactcgata     13680
     tatagaattt tatagatttt atactttgtt tatatttagg aacataatgg tacaatcaaa     13740
     ttttaatttc catatatttc aaaattagag ttttctaaga ttacaaatag tttaaataaa     13800
     ttgtttagag cacattggtt tgttattttc ttatgtattc tacaatttgt gaaaaagttt     13860
     tgaaagtgtc ttaaactttg atctagttct aaatcaacta tttttgtact taaatattta     13920
     cttaaaaact gtttctttgc tcgacctcgt acaataactg tagcgaaact atttaatgga     13980
     cttaatatat caccaaggct taaataagaa atgtcgccat cacaccaatc caatccatcg     14040
     acatattgtt tagttgtttt tagggttttt cttgttattt catccagctc ttttatatca     14100
     taaggaggct tgaagtgaaa gaaattcgga aggattgatc cggcttgcat gaaggccaat     14160
     tcctttacaa aaatttgttg ctcgtttcca aatatatact gaaagtcaag aagaacacac     14220
     gagctcctgt ctatcttaat catgttgcgt ctaatgtgta taatgtactg agaagcatga     14280
     gcaagactct tcaccttaaa tagcgttcac aattcaattc ccaagttagt ttgagacaac     14340
     ttttcaatcg atatggacac acttcagcta agaaaatcca gaaattcaag aaaaattcaa     14400
     gatcacgaaa tcatttttgg tttcgagtat tttgttaatc tacaactaaa attaaagtgt     14460
     ggcttttcaa caacgagacg atttacacca atggtttgga tgcagcagca taaacgtaat     14520
     ttcattggat ttggaaaaga ggaatggatt caattactga cgtttaagga atatatccag     14580
     ttaaggcttg agcagtttga gttcttgatg cctgatgcac taattgataa tcccaagatt     14640
     gagagcataa agtgtcattt taagattaga aaatccgata agcaatgcat attaatttta     14700
     aatcaatacg gaaataaaat tgaatttgat agtgaatcat ggagagcctt cataagatta     14760
     gggatatttt tcacgtcatt tttatgttgg aacacactgc ttaaaaatca aatttgtaat     14820
     atatataata attatattat cccaaaatgt tcaaagatgg ggaaatatga tgtacaactt     14880
     ttagatttaa atgtgtctta tggacatgaa gcagaaattg atttaacacg cctatgcttt     14940
     gaaatttcaa gaaaaatggg aaaagaaatt aaaaaagatg taaaccagta tagacaagta     15000
     ttacaaaaga aagttacaca agtatagaca ctttataaat aaagtaaaat aattcttcag     15060
     ttgcatttct gcttttggag aatacacaac agaatgggtc taatttcgaa ttttggattt     15120
     aaaacaaatg taaggaaaat tgatgatttc ctcaaggagt ttgaggatgt aattttccct     15180
     gaacattcta aattgttgga ggaataccga gtatttttct tggaatatga aaactatcgt     15240
     ctaattaaat caaaatatgg aaagcacttg acagtgtgct catggtcttc ggataacgct     15300
     acagaaggag ttgatacatg tgcttgttac ttctttgcat catataaaag aaaactggat     15360
     cgtcttatat ttcaatatac taacttaaga aagaggttaa gcaaaatgga taataataat     15420
     aatatagttt cataatgtac atgtatccta aaattaaact ataacaataa gaataaacaa     15480
     attttcacat ttgtaaacat tctatatata taaataaata aaatatatta tgaaaattag     15540
     aaaaaaagaa gttattttat ttaaacattt taaactctac agacctaggt atgaagccca     15600
     caggtgcaca aagcaacgca ggctattatt tcaaattatt gtgaaattaa cawaaggagg     15660
     gtcactcaaa cagagtgcac tgtaaaaagg gagagaacca aacacacgaa gaaggtacca     15720
     gcacgtggca aacgtacgtg cgaagtacct acttaactac agtttacacc aataatactt     15780
     taattattgt gtgggaaaac attcaggtgt gaggtctcgt atgagttcta tgcattgaca     15840
     aaaaagtgac aaaagagaag cgagcattac ctttccactg atcattgcac ccaccctcaa     15900
     taatcaaatc atgaacatcc acagcagtgc gccagctgct agctgatctt ccacttgatt     15960
     ctaacacaca ggttacaggt tacacgcctc gcacacaata tcccccttaa aaccacaatc     16020
     acgtgcgcac acactagtgc tgctgagtga tcctccacct gattctggca cacaggttac     16080
     aggttacacg cctcgcacac aatatccccc ttaaaaccac aatcacgtac gcacacacta     16140
     gtgctgctga gtgatcctcc acctcatacc aacccacaat aaaaaaaggg tcagccataa     16200
     atctataccc ttcgatcata aatgtctcat acgtgatcca aaatcacaca ttttcctaaa     16260
     aaaggtcaca cacctgtcac tcccccaccc aaaaacaata aattagctcc tataatgaag     16320
     caattaaaaa tcgaaaaagc aataacctgc ttcctgtcat agaatcccca tttccctact     16380
     act                                                                   16383
//
ID   Polinton-1_DK repbase;    DNA;    INV; 7252 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   Polinton-type DNA transposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-7252
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila kikkawai.";
RL   Repbase Reports 12(7), 1175-1175 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..1639
FT                 /product="Polinton-1_DK_1p"
FT                 /note="DNA polymerase."
FT                 /translation="MPTSSVYSSPQDASEKTQIVNKHIPIAFAYYIKCSFD
FT                 PALDKYVTKTGSNVGRTFVDSLTSDLSAIYEKYMNYIVPLQMSAQDAFDFD
FT                 EALNCHICKGVLGNDRVRDHCHFTGQFRGAAHSECNLKYKTGDFIPVFFHN
FT                 MSKYDAHLFVKELGEIEGEIKIIPLNKEVYISISKYIPIGKNKLEIRFLDT
FT                 IRFMPSSLDTLAGTLNEGDFKVLRNQFPNSTDFSLLRRKGVFPYEYLDSER
FT                 KLMETCLPPRSXFFSKLTDSECSEADYLHAVQVWSHFKCKTLRDYLELYLK
FT                 TDVLLLTDVFQNFRAICKGIYELDPAHYYTTPGFSWDAMLKTTKISLELIS
FT                 DIDMILFIQSGIRGGLVQSSHRYTKANHKYLKDFDPTKESEYLMYVDANNL
FT                 YGWAMSEPLPYGDFKWLEPSEIESFNINSISESSEYGYILEVDLKYPYALH
FT                 DKHNDLPFCPANRRPSKNSKTAKLIADLCDKNKYIIHYRTLQQCLLNGLEL
FT                 EKIHSILRFKQKPWLKEYIDINTAHRTRANSNFEKDLLSF"
FT   CDS           3775..2858
FT                 /product="Polinton-1_DK_2p"
FT                 /note="integrase."
FT                 /translation="MSRRGIINELHAPARKHFLRRRVITKGINCLWQADLV
FT                 DMQKYSSTNNGYRYLLTVIDTFSKLAFGEALKSKTASHVSEALEKIFNSGH
FT                 GVPKNLQTDDGKEFFNIQFKSLMNRYEINHYSTFSTLKASIVERFNRTLKE
FT                 LMWKEFSYNGTYKWIDMYQALINFYNNKVHRTIKMAPVEVNADNERHILQT
FT                 VYNNIKMFAGSKLKIGDNVRISKYKGVFEKSFTPNWNVEIFTIYKIQNTYP
FT                 VTYLLKDLNGNPVKGGFYKEELKKTRFPNTYLVEKVLKRQGKRALVRWLGF
FT                 PKSDDSWINTSEIL"
XX
SQ   Sequence 7252 BP; 2161 A; 1306 C; 1330 G; 2400 T; 55 other;
     aaccgccagc tggaggtacc ctttgctgtg tatgccgact tcgagtgtat actcgagccc        60
     acaagacgca agtgagaaga cgcaaatagt aaataagcat attccgattg ccttcgcgta       120
     ttatattaag tgttcatttg accctgcctt agacaaatat gttacaaaga cagggtcaaa       180
     tgtcgggcgc acttttgtag atagtttaac gtctgatttg tctgctattt acgagaagta       240
     tatgaattat atagtccccc ttcaaatgag tgcacaggat gcttttgatt ttgatgaggc       300
     ccttaactgc cacatatgta agggagtttt aggaaatgat agagtgagag atcactgtca       360
     ttttacaggt caatttcgag gggctgcaca tagcgagtgt aacctaaagt ataagacagg       420
     agatttcata cctgttttct ttcacaatat gtctaaatac gatgctcatt tatttgtgaa       480
     agaactcggg gagattgagg gtgaaattaa aataatcccc ttgaataagg aggtatatat       540
     ttcaatttca aaatatattc ctataggaaa aaataaatta gaaattagat ttttagatac       600
     tattcgtttc atgccctcta gcctagacac ccttgcagga actttaaatg aaggggattt       660
     caaagttctt cgaaatcaat ttccaaatag cactgatttt agtttgcttc gtaggaaagg       720
     tgtatttccc tatgaatatt tagattctga gcgcaagctg atggaaactt gtctcccacc       780
     aaggagtgma tttttcagca aattaacaga ctcagaatgt tctgaagctg attatctcca       840
     tgcagttcag gtttggtctc acttcaagtg taaaacactt agagattatc tagagctata       900
     tttgaagaca gacgttttgt tgctgacaga tgtctttcag aattttaggg ctatctgtaa       960
     aggtatctac gaactcgatc ctgcccatta ttatacaact ccgggcttct catgggatgc      1020
     gatgttgaag actaccaaaa tatccctcga gttaatatcg gatatagaca tgattttatt      1080
     tattcaaagt ggaattcggg ggggtttagt tcaaagtagt catcgatata caaaagcgaa      1140
     ccacaaatac ctcaaagatt tcgatccaac taaggaatcg gaatatttga tgtatgtgga      1200
     cgcgaacaat ttatatggat gggcaatgtc tgaaccactc ccctatggcg attttaaatg      1260
     gttggaacct tcagaaatag aatcatttaa tattaattct atttctgaaa gtagtgagta      1320
     tggatacatt ctagaggtcg acttgaagta cccatatgca cttcacgaca aacacaatga      1380
     cctgcctttc tgtcccgcaa atagacgtcc ttcaaaaaat tccaagactg caaagttaat      1440
     agcggatctt tgtgataaaa ataaatacat tattcactac agaactttgc agcaatgctt      1500
     acttaatgga ttggaacttg aaaagattca cagtatcctt cgattcaagc aaaaaccttg      1560
     gcttaaagaa tatattgaca ttaacactgc acacaggact agggctaaca gtaatttcga      1620
     gaaagacttg ttaagctttt aaacaacacg tctatggtaa gacgatggaa aacagctaag      1680
     ctacagaatg ggaagctcca cctgtgggcc caaaaggtgg gcgcccgaga ttatgtgcta      1740
     gggacctaat agccagatca aattttcaca gtgcaactaa gtttactgaa aacatgtacg      1800
     caattcaaat gaataggttg cgtaacgttt gtgataagcc aacatatcta ggttttgtag      1860
     tgttggagtt atccaaatgg aaaatgtatg attttcacta ctcttatatg aaaccaaaat      1920
     ttcaagatgc actgaaatta aactatatgg atacagattc atttatctat tccattaaga      1980
     cagaggattt atataaggac attcgagatg atattcaatt aaaatttgat acatctgaat      2040
     accctgatga attggctagg caatatgatt ttctacagtg taacaagaag cgcttagggt      2100
     actttaagga tgagctgcat ggcaggccaa tgacagagtt tgtgggtcta aggtctaaga      2160
     tgtacgccta tacagcgtca agtgcaggta gcgagcccga aaaatgtgta aaaaaaaata      2220
     agggcgtgaa gcgaagtgcc ttggagaaaa ttacattcgg gaaatataaa aattgtttgt      2280
     tcacaggaca acaagaaagt gatagcatgt atttgtttcg gtctaggggg catgaaataa      2340
     tacatacaaa atttcaaaaa taacattaga taataaggat gataagaggc taatatgtga      2400
     agacggaatt gccacaaaag cgataggaca ctattcgaca agagaagggg aacttatggg      2460
     gtgtatctca actctagcag acaaagcacg ggggttaaat aatgaaactc ttgcgataat      2520
     gagtgaaaga aagagagaag acttaaaaag aaagttggag gaaacaaaca gtgcgctcga      2580
     cgaatatgaa cgagatttaa tttggcatta tattaaaata gctaaactag aaaatccaga      2640
     atttgtgata taaaatataa attcaaattt gtaaataaaa cattgtattt gagttttaaa      2700
     ttaaaaaaat ttattcaaaa tgtttagatc taagattaaa ataaataaat aaaatataat      2760
     gtataatgta aagttaaaat taaaaaaaaa aataataata ataaaataaa aaataaaaaa      2820
     aaaataaatg tgttgtatgt gtatgtttat ttcattacaa aatttcagat gtatttatcc      2880
     agctgtcgtc acttttcggg aagcccaacc aacgtacgag tgctcttttg ccttgtcttt      2940
     taagtacctt ttcaactaga tatgtgttgg gaaatcgggt ttttttcagc tcttccttat      3000
     agaatccgcc ttttacggga tttccattca agtcctttaa taggtatgtt accggataag      3060
     tgttttgaat tttgtatatt gtaaaaattt caacattcca attcggagta aatgattttt      3120
     caaaaactcc cttatattta gaaattcgaa cattgtcacc aattttcagt ttgctacctg      3180
     caaacatttt gatattattg tacaccgttt gcaagatatg cctctcattg tcggcgttta      3240
     cttctacggg agccattttt atagtcctgt gtactttatt gttgtaaaag ttaattaagg      3300
     cttgatacat atcgatccat ttataggtcc cattgtaaga aaactccttc cacattagtt      3360
     cttttaatgt cctgttgaat cgttccacaa tggaagcctt tagagtacta aatgtcgaat      3420
     aatgatttat ttcataacga ttcatcaacg acttaaattg tatgttaaaa aactctttcc      3480
     cgtcatctgt ttgtagattc ttaggtactc catgcccaga gttgaaaatt ttttccaatg      3540
     cttcagaaac atgtgaagca gtcttagact taagtgcttc gccaaaggcg agctttgaga      3600
     aggtgtcaat aactgtaaga aggtagcgat atccattatt cgtggaagag tacttttgca      3660
     tatccaccaa gtcagcctgc cataagcaat ttattccctt tgtaataact ctccgacgga      3720
     gaaaatgttt tcgtgcagga gcatgtaatt cattaataat accccgtcga ctcattttca      3780
     cacaagttac ttagaatatc cttttttttc aataatactt gaaataacaa cctcaagtct      3840
     gtctaaacga tcctcaatat cggtggccct cacatcagga atactaataa ttaactcctc      3900
     ttgatgtgac attagcgatg ctcttatatc gtgtatagcc ttgtcaacat attctttaat      3960
     gactaagtcc gaattctctt ttggaaagtc tccatttttt aagcgccttc gctgaatatt      4020
     aaagtttcca tccgtatcta tgaagagtcc tgtcccagtt ttttcatatc gttttaaatt      4080
     agtgttctgc ttgtcatgta aawaacgtcc aaacttgtca acggacatta tgattataat      4140
     cttatttgtt aatgtttcat aattatatac ttaattagaa tataatttta gcctctctta      4200
     gttcctcaat tatcgatgta atctcattat tgtggttttg attgcctgct gattccgatg      4260
     ctattaagag ctgaagtcgt tccactaatt cgtttggatc atcccagtag atwaasttag      4320
     gcttattcmt ctcaagtgtc atgaaaccag acccacttat catttctttt ttccctttgg      4380
     gtgtagattc ggcgacgggt accttagcta aaagtggttt aataattttc gaatatttca      4440
     atgctctcgt tcctttcact tgtccatttg gttgaaaatt tcttcgatac acatttgttt      4500
     ttattaatat ttctcgatat atttccaggt catctgcatt ataattattt gggaggtggt      4560
     gacatattaa agaatataat ccgcttgtga gtcgccagtt ttgaccatca tcaaattcaa      4620
     ttatattatt ggttacattt attttgttat ttcccaacat taattgmcca gcttcatttt      4680
     tgtatggtcc atatgtctta tccaaaattc gttctcgtgc cagttcacta acattaaaat      4740
     ttttcgggct ctcttcaaac agaggttgag ttgctatcaa tggagatgaa ttgagggagg      4800
     attgccttga taatacactt ggtgcgtgga gagacgcttg gcttgatatt gcaggtgatt      4860
     gatttaagtg gtgatcgggt ggtgagaatg aagaatcatc gtctatagcg ggttgggagt      4920
     aaaattgatc atctcatcat catcatcatc atcatctcta ttatcattgc gagtattctc      4980
     ataatcatct tcttcagcac ttttcaacct ccaatccgat agattgtatt caccttcttc      5040
     agcatttgaa tttttgstag gcgcagtata aaatgtaagt ttcctctttt tcatatgcgg      5100
     agttttattt tcaatctcca ccttagtttt atcatattgg ttctctttgt gtttattgta      5160
     ctcaattttt ttggtatgat tgacaagttc atttagcggt tcagttatsg gcttaaatgt      5220
     ttcttccaaa cccatagtat tctgactttt aaattgaaaa ttttttttaa agcatttcga      5280
     gttttattca attgtgataa aatattttgg ttcattgtga wgaaatttta gaatgtttca      5340
     atcgaaagaa caatactggt tatttctgtc tcggagttcg gtatgcactg agaaatawtt      5400
     aattaatcat gatcatatat acctaatctg ataaaccgam ctgataatca gacctgatct      5460
     gtttatcagg tctgataaac cgacccgaca atmagaactk gtwtcwkctc tgwtmtkttt      5520
     atcakktctg ttttsatttt taatctgaaa taaaaggctg aaaaakaawt ttcccgagtc      5580
     mcttttccca ataaaawatk tktaattttc wttttkatat tttttttatt tattgaattt      5640
     cgtacttaaa tctataatta cgtttccacc ctccagcttt aggmgggaat acatccctga      5700
     agaaaasttc tgaattacct catcactaag ctgcgagaac ccatccggga ggaatacawt      5760
     wcttgwgacc agttcgagca taatattggt gccgaacttt cccgccaccc gcctggccga      5820
     awaaatattg tcggcagctt gtgaaasstt agtttcctwt ttaccctgca ggcgttgaag      5880
     gcctgcatca gagggtcttc ctcaatatcc ctcaaaaggg catcgatgtc ctcctgcgtg      5940
     accccagggg gaaggttgga ggcggttgag ttggagctgg atgaggcgga tgggttgccg      6000
     gagttggata cgctgttgga gccggtgggg ctggtggtgg tggtgaastg gttcatgatg      6060
     ctggagtttc tgctgatgct ggtggctgct cgtcacgctt gctggtcgct gaatgatatt      6120
     tttcctagac gaggtccctg aatttatacc cgccaaggag cawatttctc ctcccactgc      6180
     tatccacttg tactatggta ttcggtctca agggatagaa cgtctagstt tgtaaaaggt      6240
     ctagcaaaaa tttaaggcat aaatgcccac agttaaaagt atcaaatttt tggaaacgct      6300
     gataattata wcttattttt tcccckaaat atctaattat ttctaaaggc ggctgcaagt      6360
     waccaaaact gtcaaagtag wacgagtctg atcctttctt ataatacgcc acccaatgcg      6420
     ttccttctga tgatgagtct gctaaattta ttattccacg ctcggaataa tgcggtactt      6480
     tgggtmtctc atctctcata taaacccccc gaaaatktgg aacattttta aaggcaaact      6540
     tcaatataaa attggawagt gctctcttgg gtagctcatt taatagtttt tttgattgca      6600
     tttttttgtc ttttgaaaat gatataccat agcctttmtt gtatkgttgt wggtacaagc      6660
     ctttacccaa cgatcagatt ccattttctg ttatgtctct ggttttcctc aagttgtgcc      6720
     tttgccatct ttgcattgtt tattgatttt acamttgcag cgctacctga cgctaaacta      6780
     cccacagcgc taagggctgt taaaataggt accaatggta aaaaaccacc aactttggga      6840
     actgctatta cccgtggaat tacaacattt ttcttacatc ccattgattt cgatactgca      6900
     ctgcgtgcca ctttaacagc attcaatatg tcgagtggct tattctttcg caattcgatg      6960
     gttgcctttt tgatawttga tgcaagagat kttttcacca ctttcttttt ctgctgcttt      7020
     gctcccatac caaatttctt ttttagcttc atcatgtttg taacaaaata tgatgcagcc      7080
     ctctcactaa tgctgctatc cgctgctttt actcgatccc aagccctatc aattaaaatc      7140
     gagtctgctt tatgacgctc ccccaaatcc tttgtatttg aatatgctat atcgtgttcc      7200
     ctacaagctt cgtctaagcc gttgatcccc cgatcaccgc gagctaatcg tt              7252
//
ID   Polinton-1_DPe repbase;    DNA;    INV; 15797 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   Polinton DNA transposon: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-15797
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(8), 1380-1380 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1619..3286
FT                 /product="Polinton-1_DPe_1p"
FT                 /translation="MASKVKCNMCDKSVDFSEFQSHYERCSDSRNNVVCDL
FT                 CSKSIDLIEFDSHYEACLGPRNAFEILMSKGSNSSDLQGPSTSGASKRPRL
FT                 DTPMXLRIIDCSICGESYPSSRERRHMMSDKHKNARAAQLEENENVILIST
FT                 ESRFPLKSYRVHSNKSEQIDLKEFFHDCKNDIINLLRHCMSEYRSIKYNLK
FT                 VYGLYVKNTDDESLTETMKHFITPYKPIYENELIDDHLNDTIENLITLSSE
FT                 FQEKDSGWAIKCFKYFELTMIKLEHIAANRFIQAPKKIKSRNALINVKNDD
FT                 DFCFKWCVLASLAYGTHLKTIYQTAALKKISRDKLTIPSSYRCGNIRQDII
FT                 YYEGVRLNFSGIEFPITSKGIKRFESANEDFSINVYEVDENGKNVVGPTVR
FT                 TKKIRTHHINLLGINSDNMQMMHYAYITCMRKLCYSQHSKSHNTAYFCENC
FT                 LQFYSTTNTIHDTKECGKVAALYPEPNTKTVFKSFSKKLSPPVVIYADIEA
FT                 VLENYHINLNDPSKSSTTMAQRHTACAASFYIVHKYNXHLNEMWTYEGKYF
FT                 HIPAKAINS"
FT   CDS           3351..5444
FT                 /product="Polinton-1_DPe_2p"
FT                 /translation="MKTDGLYEKYWKSYKKPIYQFNIWDEDYQEHGVCYAC
FT                 EKQISDDDREKFFDQFTGQYVGPIHKLCKQTFRLSDPFFPVVFHNLSRYDI
FT                 HLFVTSIKDELRPIPCNKELYIALTQICKLDESYLHQYKIRYIDSNRFLNS
FT                 SLEKLASYMNIANFKILKTKYQGEKFDMLRRKGVFPYDYLDSFEKFDESLL
FT                 PSRDNFYNSLNDEECSVEDYNFAQKVWSAFNCKSIRDYLKLYLESDVLILA
FT                 DVFENFRSLCSRVYRLDPINYVTAPSVSWDAMLKYTRVELELVSDPDIYNF
FT                 LKTAVRGGLTQCTQRIATANNKYLNNKFKPTEPINFLSYIDANNLYGWAMS
FT                 QPLPFSNFKFLSNDEISSFNVLSISASSDVGYILEVDLRYPDDIHNKHNSL
FT                 PFCPENKIPPGGKQTKLIADLTDKKNYIIHLKQLQLCIEQGMILEKISRVL
FT                 SFNQSCWLKPYIDLNTSLRKLASNDFEINFYKLMVNAVYGKTMENVEKRRE
FT                 VALVKHYDSRQNSAGFRQRIARHNFHSVEIFGDNLAAIESTKSRIFYDKPI
FT                 YIGVSVLELSKWLMYDYFYNFHSVKCPSSKILYMDTDSFIISSEEDFYDLI
FT                 KFNPNRFDTSNYLASNRFGINLANNKELGLMKDENAGKIMTSFAGLKAKAY
FT                 SYLIAKDDNTDYNVKKVKGVKKSVVKRLTHTHYIECINIKKLLWTTESY"
FT   CDS           8225..8908
FT                 /product="Polinton-1_DPe_4p"
FT                 /translation="MFKQFIHPFTMLICGPSGSGKTTFLENLINKRNDLLS
FT                 ISINRIIWCYGEEHAKPNFNTIEYYKGVPETIENENHEPILLILDDLMMGA
FT                 FNKNVCELFTKGSHHRNLSVIVVTQNIFHKSSHTRDISLNTKYIVAFKNPR
FT                 DKLQFQCLARQIYPENSQELFRIYKEVTDEPHGYLLIDLTQGINDLLRFRT
FT                 HIFNSEYTVCFSDENGLQKESKSTESEQTFIVCAQKGK"
FT   CDS           9178..9861
FT                 /product="Polinton-1_DPe_5p"
FT                 /translation="MLKNKHQLTKVILMHPNAYQKLVNNAQKNDLINITFL
FT                 PILNDKKTSDFNKWIKIRQELCYYQNKKRNKTMDIRTTQNKRLSSPQSIGI
FT                 QTQDESVWLDVKPNTSILNNKNNGSSKKELSITNEFSDLPNDIDDEDFLTE
FT                 KSFNSKPNKRKVEDTSFLDTQASKKPALTKVKLTDKQRKLRVKLKRYKSEP
FT                 NPFQDLKYVSGREKLMRAVRNSKAVQIGKNKINWLSYN"
FT   CDS           7465..7977
FT                 /product="Polinton-1_DPe_3p"
FT                 /translation="MNTIDRNSSVIVDFQYVFGNNKQLFIKELAFMQTGTV
FT                 TPNFFHFKPPYHLNELDNEMIKQQNINRQTINGLEWSDGEISYLSLGEILS
FT                 PLNRFSTVIVRGEIKKKFLSKYLTNNIIDIDIGKSLTFYPNFFTNCRIHKK
FT                 IPLRCALNNLFKLFVILENSNYAIYCNGDSYV"
FT   CDS           10957..12246
FT                 /product="Polinton-1_DPe_8p"
FT                 /translation="MTTHIECMKSELDLFEPHPTQSSILRTEEVSYNPIAS
FT                 LDSASSIEFVCLGNGETYRDLSSVYLRLVVQLRKSDNTNIEGNDVGVVNNI
FT                 LHSMFRSSSVYLNNILVSQSDNNYHYRSYLQTILNYGSDASESHLATQGYY
FT                 PNYGKLLSGRYVNTDGSIMLKNIFQNSNKVELFGKVHGDIFNQPKLLINNV
FT                 DLRITFNIEKTAFYLMESETESNLKILEAQLFMNHITINPSILLAHHHVLQ
FT                 TKNAIYPYSKVQVKSFTIYPGNNTLSIDNAVIGQLPNFLAFCMVKNKSYSG
FT                 NRALNPFNFDHFKIQRFNLLVNGVQVPSQALEFDFSNSENAQSSRGYNMLF
FT                 RSSGIKHYDRGLQITKEMFDKNSFILAFDLTADHHNSTVCSNLISQGAIRI
FT                 EGRFSEPLTEAVTCLVYCEYDSMIDIDKHRNIRVLL"
FT   CDS           10490..10957
FT                 /product="Polinton-1_DPe_7p"
FT                 /translation="MTKSYQQYYLNQCGGGLNHIGSLYVSPRVIQQGRGIG
FT                 NFFSGLFNYIKPLFLSGINAIKNQASETGKAVINEFGRKPLRTIIQEQSKI
FT                 ALQNLSNKAINKLTRFQNGAGKKNKKRRSRKKLSHLSSKEGSKHTQSRTKK
FT                 KKSTKKLTIRDIFSKSK"
FT   CDS           9892..10440
FT                 /product="Polinton-1_DPe_6p"
FT                 /translation="MVNVTEFFVTLLSNDSLNVYHDNVKCAFTNIVNIPEN
FT                 MNDDWEVGITDLYLNKCIKSRPENTSIVSEETTEFVISLVNGETFRYENES
FT                 IESEQFQNGLIFVYTDIIKPRCVGNKRPRCLRVLHYNGKEQLIQFNNIEYY
FT                 PIEIWSPKEISILITDSKGYKVPFESSAIPIFVTLHFKKRKEML"
XX
SQ   Sequence 15797 BP; 5604 A; 2464 C; 2508 G; 5189 T; 32 other;
     agcatgtgca gcttggcaac atgttgaatg taagtgtgca tcatattgct atgttattac        60
     gtgatcatgt taaataaata cttataagat attttattaa cattgaattg ggaaccaatt       120
     tctgctatgt tattaactgg tcaagttaaa taaatactta taggatattt tataaacatt       180
     gaattgggaa aacaaatgtg tgaagtttct gaaatttaca tcctatagaa aacataggtt       240
     ggaaacctgg gtatctagat gtccgtatag agggttgaat ggtaagagaa cacaaattaa       300
     tggagatata tataggagca cgcaaagaat aaaattataa taggaagaca tcaaaattaa       360
     ttaatgctac ttagagtaaa tatacgtctg tcccgtatcc ttactacttg gtggcgccac       420
     ctatcggcga taatgtgaac taacttcgat cttaatcctg tttctcaacc atgtaaaatc       480
     ctctcaaatc gatccttcgc tcatttatat tctctctcct cccacttact gtcaatgaac       540
     ctgtttttac gattggtccc gtttgcgatt caaacaaccc tcaaacaggt aggtcatccc       600
     tttgcaatga atctaatgtg atagtttaga ggtatttttt aagtgtttcc tgaaaaacgg       660
     tttcgatgcc cttgaacctt tctactttct ctataattta tattcctcct ttgtgtacct       720
     aacactgtcc catagcaaag tgcctatata ataactactc acagctaaca gctagkacat       780
     aaactagtaa tctttcaaca acgatggatg acctcgaaat catttttatc gattcccaac       840
     cggaatcaac cataaatctg gactctcagc cgagctccgt agacctgtcc ttgatttttg       900
     ggattaagac ccaaacctat ctcgagagca acttsacctg gttaagtgac attaaatggg       960
     atgatgacga cgatgaccca aggaatgcaa cgtctaataa tgataatcca kcatacattt      1020
     tcccggatga tgacaacatt ttcgatttag tagataatca ggatgatgat aaaagatctc      1080
     aactccagga actacttcgg gacgaagatg atgatgactt aattgctgcg gtaaaattag      1140
     ctgaggcgaa attttaataa tacgaataca tatttatata ataagaatat tttatgtatt      1200
     tttctaaaaa taatatatac atatgctata taataaatat aacacattta accactattt      1260
     attttaaatg ttttctgttt tacttttgat tggttgaatt tcacttcctc ttattacaag      1320
     agaatcatag gattcgtttg aaacaggttt cttccacgtg aggattacac aaaaagaata      1380
     agtggatttc aggtagaata gaggttgtaa cctttccctc atattattag attgacccag      1440
     taggaatcgt ttgaaacagg tttgtgagca ggtactgttg ttttggatat aaaagattaa      1500
     gaaggtgttt gggaggggcc taaaaagata ccatttaaaa aggaaaccct tagtcctgtt      1560
     tcaatagtga aagtggttag ttcgatacaa aaaaaaaaat aaataaataa aacttaaaat      1620
     ggcatcaaaa gttaagtgca acatgtgtga taagtccgtt gacttttcag agtttcaatc      1680
     tcattatgag agatgctctg attcgcgtaa taatgtggtg tgtgaccttt gctctaagtc      1740
     catcgactta atagagtttg atagtcatta tgaagcatgc ttgggaccta ggaatgcttt      1800
     tgagattctt atgagcaaag gatctaattc aagtgatctt caaggtcctt caacgtcagg      1860
     agcttcaaaa cggcctcgat tggatactcc gatggamcta aggattattg actgttcaat      1920
     ttgcggtgaa agttaccctt cgtctaggga aagacgccat atgatgtcgg acaaacataa      1980
     gaatgcaaga gcagctcaac tagaggaaaa tgaaaacgtt attttaattt caacggagtc      2040
     gcgatttcct ttaaaatcat atcgtgttca ctcaaataaa agtgaacaga ttgatttaaa      2100
     agagtttttt catgattgca aaaatgatat tatcaattta ttgcgtcact gcatgagtga      2160
     gtacagatcc ataaaataca atttaaaagt atatggatta tacgttaaaa acactgatga      2220
     tgaaagctta acagaaacaa tgaagcattt cattactcca tacaaaccaa tatatgaaaa      2280
     cgagctgatt gatgatcatc taaatgatac catagaaaat ttgataactc tcagcagtga      2340
     attccaggag aaggattcag gttgggcaat aaagtgtttt aaatattttg aacttaccat      2400
     gataaaacta gagcatatcg ctgcaaacag gtttatccaa gctcccaaaa aaattaagtc      2460
     acgaaatgca ctcataaatg ttaaaaatga cgatgatttt tgtttcaagt ggtgtgtttt      2520
     agcatcatta gcctatggaa cacaccttaa aactatatat caaacagcag cattaaaaaa      2580
     aatttcccga gataagttaa caataccatc atcctatcga tgcggaaaca tacggcaaga      2640
     catcatttat tatgaaggag taagattaaa tttttccgga attgagtttc caataacaag      2700
     caaaggaatc aagcgattcg aatcagcaaa tgaggatttt agcatcaatg tttatgaagt      2760
     cgatgagaat ggaaaaaacg ttgtgggacc cacagtgagg actaagaaaa ttcggactca      2820
     ccacataaac ttgcttggaa ttaatagtga taatatgcaa atgatgcatt atgcatatat      2880
     aacgtgcatg agaaaattat gttattcaca acatagtaaa tcccataata ctgcatattt      2940
     ttgcgagaac tgcttgcaat tttatagtac aacaaatact atacatgaca ctaaagagtg      3000
     tggaaaagtt gctgctttgt atcctgaacc taataccaaa actgtattca aaagtttttc      3060
     taaaaaacta tctccaccag tagtaattta tgctgacatc gaagcagttt tggaaaatta      3120
     ccatataaat cttaatgatc catcaaaatc atcaactact atggcacaga ggcatacagc      3180
     atgtgcagca tcattttata ttgtacataa atacaatgaw catctaaatg agatgtggac      3240
     atacgaaggt aaatattttc acattccagc aaaggcaata aactcataaa cattatgatt      3300
     tcgttatttc aggaccggat tgtatccaaa aattttgtca agcacttagg atgaaaaccg      3360
     atggacttta tgagaagtac tggaagtcct ataaaaaacc aatctaccag tttaacattt      3420
     gggatgagga ttaccaggaa cacggcgttt gctatgcctg cgagaaacaa atttctgatg      3480
     atgatcgaga aaaattcttt gatcagttta caggacaata tgtaggtcct attcataagc      3540
     tgtgtaaaca gacatttaga ttaagcgatc cctttttccc ggtagttttt cataacttgt      3600
     ctcgttatga tatacattta tttgttacgt caataaaaga tgaactaaga cccattcctt      3660
     gcaataaaga gttatatatt gcgttaactc aaatttgtaa gctcgatgaa tcttatcttc      3720
     atcaatataa aattagatat atagattcaa atagattttt aaattcaagc ttagaaaaac      3780
     tcgctagtta tatgaacata gcgaatttta aaattttgaa aactaaatat caaggtgaaa      3840
     aatttgatat gctacgacga aagggagtat ttccctatga ttatttggat agttttgaaa      3900
     aatttgatga atccctgctt ccttcgcgag ataattttta taattcactg aatgatgagg      3960
     aatgtagtgt tgaagactac aactttgctc agaaggtttg gagcgcattt aattgcaaat      4020
     ctattagaga ttatttaaaa ttatatttgg aaagcgatgt tttaattctt gctgatgtat      4080
     ttgagaattt taggagtctt tgttcccgag tgtacaggtt agaccccatt aattatgtta      4140
     ctgctccttc agtttcatgg gatgcaatgt taaaatacac aagggtagaa ttagaacttg      4200
     ttagtgatcc tgacatttat aattttttaa aaactgctgt tcgtggaggg ttgacccaat      4260
     gtactcaacg gattgcaaca gcaaataaca aatatttaaa taataaattt aagcctaccg      4320
     aacccataaa tttcctttca tatattgacg ccaacaactt atatggatgg gctatgagtc      4380
     aaccccttcc attttctaat tttaaatttc taagtaacga tgaaatttca tctttcaacg      4440
     ttcttagcat atcggcatct agtgatgttg gatatatttt agaagtagat ttgcgatatc      4500
     ctgatgatat tcataataag cataatagtt tacctttttg ccccgaaaat aagattccac      4560
     caggaggaaa gcagacaaaa ctaatagctg acttaactga taaaaagaac tatataatcc      4620
     atttgaagca gctacagtta tgtatagagc aaggtatgat tttagaaaaa atatctagag      4680
     ttttatcatt taatcagtcc tgttggctga aaccttatat tgacctcaat acatctctta      4740
     gaaaattagc tagcaatgac tttgagataa acttttacaa attaatggtt aatgccgttt      4800
     acggcaaaac aatggagaat gtagaaaaac gtcgtgaggt tgcattagtt aaacattatg      4860
     attcaagaca aaactcagca gggtttagac aacgcatagc aagacataat ttccacagtg      4920
     ttgaaatctt tggagataat ttggctgcca ttgaatcaac taagtccmga attttttatg      4980
     ataagcccat atacattgga gttagtgtat tagaactttc aaaatggtta atgtatgact      5040
     atttctataa ttttcattct gtaaaatgtc catcatcaaa aatactctat atggatacag      5100
     attcatttat tatatcatca gaagaagatt tttatgattt aattaaattc aatcctaatc      5160
     gctttgatac atccaattac ctagcctcaa acagattcgg tatcaatctc gctaataaca      5220
     aagagcttgg attaatgaaa gacgaaaatg caggaaaaat aatgacgtcg tttgcaggat      5280
     taaaagcgaa agcatactca tatttaattg ctaaagatga taacactgac tataacgtaa      5340
     aaaaggttaa aggcgtaaaa aagtcagtag tgaaacgatt aactcatact cattatattg      5400
     aatgcattaa cataaaaaaa ctattatgga caacagagag ttattagaag tagaggtcat      5460
     aaaatttata ctgaaattgt aaataagata agtctaaatt ataaggatga caaaagattt      5520
     atattacctg ataatatttc aacattagct cataatcact atgaaattaa aaatatttta      5580
     gatgctagta ataatacaca aaatatggta taagtaaatt taacattata ttattattat      5640
     ttttaatttg tgtataatta aaactatatt tcaatgtaaa aaatacacaa aaataaatta      5700
     aatctgataa atattttgcg tgcttaatta ttttaatata ctctttttat ctatccatga      5760
     attgtgtgtt tcatcgaaac ctaaccattt aacaaaaact tgttcttttt tccttctgag      5820
     tattttttcc actaagaaag cattttcatc tttaactttt tggagttctt gatcataaaa      5880
     tgagcctttg atcatttccc ccttatagtc ctccagttca tatgttacag gattagtaga      5940
     ctttactttt aaaattttaa aaacttcggt tgtccagttt ggatcatagc cctttgtaaa      6000
     aataccttta tatttactta ttctaacagg atcaccaatg gaaaacttgt gtttaggaaa      6060
     taccttacaa atattataag ctgttttcaa aataaactct tcattttgtt tgtttacatc      6120
     tataggcttc atttttatag tacggtgata tgaattatta taatctttta gtaagtcatg      6180
     caaggtataa atccacgtat gattaccctg catactaaag attttccaca tacgattttt      6240
     taatgttcta ttaaaacgtt cacaaataga tgccttaagg tgtgtatatg tatggtaatg      6300
     gttaatgtta ttctttttca ttaactctcc gaaggctaca ttaaaaaact cctttccttg      6360
     atcagattga atatttttag gtttatgttt agatattttt aatattttct tcaatgctga      6420
     taaaacatct aaagctgttt tagacttaac gggaactgca tatgcatact tcgagaacgt      6480
     gtcaattact gtcagcaagt gcctatatcc tttgttttcc ttataaaagg gtatcatttc      6540
     aactaaatcg atttgccacg tgtcattaat tcccttttgt acgaatttac gacgaataaa      6600
     atttcttcta gcaggcttat gtatttcatt aacaacttgt tgcttactca tttttaatat      6660
     aattttttat tttctattgt tatgttggga tgattgctta tttaaaagtg tttgcttata      6720
     ctcaagaaca tcgcgtttta tttgattaca catttttttg gaaatttcaa agcataaacg      6780
     ggttaaatct atttgcacat ttctatcata agtaccgtct aaatcagcta gttgaacatc      6840
     aaatttttgt aaggctgcac acttaggaat aatattatta tagtagaggt atataatttg      6900
     ttgcttaagt atcgtattcc aacataaaaa tgtggtaaaa aaaatgccta atcttaaaaa      6960
     cgatctccag gactcactat caaattcaat tttatttcca aactgattta ttataaacac      7020
     atactgctta tctgattttc gaaatctaaa attacactta attgtgggca ataatggatg      7080
     gtctataatt gtatcaggca tcaaaaaatc atactgatca agtttcaatt ggatatactc      7140
     cttgtatgta accaattgca tccattcatc tttatctaaa ccgacgaaat tgtttttgct      7200
     ttgctgcatc catatcattg gagtgaattt tcttgtagtt gaaaaaccgc atttaagttt      7260
     taaattatgt actacataat attcgagacc gaaaatgact tcgtgatcct gcttctttct      7320
     agtggaccta attctttttg attgaagcgt gtccatttgg gttgaatgct tttgtaaaac      7380
     taagaactct tactaaattg ggctgtatat aaaggagata ggcatcaaca actcattcag      7440
     tttcttacaa aatctcaaac caacatgaac acaatcgaca ggaattcaag cgttatagtt      7500
     gattttcaat atgtctttgg aaataataaa caacttttta ttaaggaatt ggcgtttatg      7560
     caaaccggaa cagtaacacc aaacttcttt catttcaaac caccatatca tctgaatgaa      7620
     ttggataatg aaatgattaa acaacaaaat attaatcgtc aaaccataaa tggattggaa      7680
     tggtcagatg gtgaaatatc atatttaagt ttaggtgaaa tactttcacc actaaataga      7740
     tttagcaccg ttattgtacg tggtgaaatt aaaaaaaagt ttttatctaa gtatttaaca      7800
     aataatatta ttgatatcga tatwggaaaa agtctcacat tttatccaaa tttttttaca      7860
     aactgtagaa tccacaaaaa aattcctctt agatgtgctc taaataattt atttaagcta      7920
     tttgttatct tggaaaattc taactacgct atctactgta atggtgactc atatgtttag      7980
     attttcagtt tatattcagc acttgtagta actagttgtt taaaatggat tcatttaagc      8040
     gtttgtttga aaaggatcct cacaaaagcg gatacacaca agttgtttat tgtaattatt      8100
     gcggatctga tactcactta gaaaaaaact gccccaaaaa gcgcgatcag gagacgcgta      8160
     attagaatat cttagatgtt agaaaacatt tataaaatat taataaataa aacataaccc      8220
     aaaaatgttt aagcaattta tacatccttt tacaatgctt atttgcggac cttcaggatc      8280
     tggtaagaca acgtttttag aaaatttaat aaacaaaagg aatgatttgc tgagcatttc      8340
     aattaatcga ataatttggt gttatggaga ggagcatgct aagccaaatt ttaataccat      8400
     cgaatactat aaaggagttc ccgaaacaat tgaaaatgaa aatcatgagc ctattctttt      8460
     aatactagat gacttaatga tgggtgcatt taataaaaat gtctgtgagc tatttacaaa      8520
     aggatcacac cacaggaatt tatccgtaat agtggtcaca caaaatatat ttcataaatc      8580
     atcacatact cgagatattt cactaaacac aaaatacatc gttgcgttca aaaatcctag      8640
     ggataagcta caatttcaat gcttagcaag acaaatttat cctgaaaatt ctcaggagct      8700
     cttcagaata tataaggagg tgacagatga accacatggt tatttactta ttgatcttac      8760
     tcagggaata aatgatctcc ttagatttcg tacacatatt tttaattctg agtatacagt      8820
     ttgcttttca gatgaaaatg gtttacaaaa agaatctaaa tcgactgaaa gcgaacaaac      8880
     atttattgta tgtgctcaaa agggcaaata ataaacttcg aaatgcaatt ataagtaatt      8940
     gtgacattga gttagtaaaa gcattagtgg agatagtgtt gaatactcta cgaggaaatc      9000
     ataagatatc aaaaaagcaa ctatatgctc taaaaaagta taaaaatgca ttacgtctta      9060
     tttcatgtcc aaaacggtca ataaattcta agagaaaagt tctcatccaa aaaggaggat      9120
     ttttacctgt tttaataagt tcattgcttt cggggatttt tggaaaaata ttgaacaatg      9180
     cttaaaaata agcatcaatt aaccaaagtt attttaatgc atccgaatgc atatcaaaaa      9240
     ttggtaaata atgcccagaa aaacgattta ataaatataa cgtttttgcc tattttaaat      9300
     gataaaaaaa ctagcgactt taataaatgg attaaaatac gtcaagaatt gtgttactat      9360
     caaaataaaa aaagaaataa gacaatggat atacgaacta cgcagaacaa acgactttca      9420
     tcacctcaaa gcattggaat acaaacacaa gacgagtcag tttggttaga tgtaaaacct      9480
     aacacttcca ttcttaacaa taaaaataat gggtcctcaa aaaaggaact ctctatcaca      9540
     aatgagttct ctgatttacc taacgacatc gatgatgaag attttctgac cgaaaaatct      9600
     ttcaactcaa aacctaataa gcgtaaagtt gaggatactt catttttaga cactcaagca      9660
     tcaaaaaaac cagcattgac taaagtgaag cttactgata aacagcgaaa gctaagagta      9720
     aaacttaaga ggtataaaag tgaaccaaat ccatttcaag acttgaaata cgtaagtgga      9780
     cgagaaaagt tgatgagggc tgttagaaac agtaaggccg tgcaaattgg aaagaacaaa      9840
     attaattggt tatcctataa ttaataaact gcaaagaacg tagaactaaa aatggtaaat      9900
     gtaacagagt ttttcgtgac attacttagt aatgattcgt taaatgtata tcatgataac      9960
     gttaagtgtg catttacaaa cattgtaaat attcctgaaa acatgaacga tgactgggaa     10020
     gtaggaatta cagacttata tctaaataaa tgtataaaaa gcaggcctga gaatacctca     10080
     atcgtatctg aagaaacaac agaattcgtt attagcttag taaatggaga aacatttcga     10140
     tatgaaaatg agtcaataga gtctgaacag tttcaaaatg ggttgatttt tgtttacact     10200
     gacattatca aaccaagatg tgttggaaat aaaagacctc gatgtcttcg agtattacat     10260
     tataatggaa aagagcaact tatacaattc aacaatattg aatattatcc cattgaaata     10320
     tggtctccaa aagaaatttc gatcttaatt accgattcca aagggtataa agtaccattt     10380
     gaatcttcag caattccaat ttttgttacc cttcacttta aaaaacgaaa agaaatgcta     10440
     taaataatac tgtaaagatg gaaatttatt cagagtagaa ataaccacca tgacgaaatc     10500
     ttatcaacaa tattatttaa atcagtgtgg aggagggttg aatcatatag gaagtcttta     10560
     tgtttcaccc agagttatcc aacaaggtag aggaattggg aattttttta gtggtctttt     10620
     taattacata aaaccactat tcctttcggg gataaacgct attaaaaacc aagcttctga     10680
     gactggaaag gcagtaataa atgagtttgg tcgaaaacct ttaagaacca ttatccaaga     10740
     acaaagtaaa attgctttgc aaaacctgtc aaataaagcc attaataagt taacccgatt     10800
     ccagaatggg gcaggtaaaa agaataaaaa gagaaggtct aggaaaaaac tatctcattt     10860
     atcatctaaa gaaggaagca aacatacgca gtcgagaacc aaaaaaaaaa aatcaacaaa     10920
     gaaattaact ataagagaca ttttttctaa atcaaaatga ccacccatat tgaatgtatg     10980
     aaaagcgaat tggatctctt tgagccacat cctacacaaa gctctattct gagaacagaa     11040
     gaagtttcat ataaccccat agcttcgttg gacagtgctt cttcaattga attcgtttgc     11100
     ttaggaaatg gggaaacata tcgagaccta tcaagtgttt acttaagact tgttgtgcaa     11160
     ctaagaaaaa gtgataatac caacattgaa ggaaacgatg ttggagtagt gaataatatt     11220
     ttgcattcaa tgtttagaag ttcgtccgta tatttaaata atattttggt ttctcagagt     11280
     gataataact atcattatag atcgtatttg caaacgattt taaactatgg tagtgatgcc     11340
     agtgaaagtc acttagccac tcaaggttat tatcctaatt atggtaaatt attatctggt     11400
     agatacgtta acaccgatgg atccattatg ctcaaaaata tttttcaaaa cagtaataag     11460
     gttgaactat tcggaaaagt tcatggagat atatttaatc aaccaaaact gcttataaat     11520
     aatgtagatt tgaggattac ttttaacatt gaaaaaacag cattttattt aatggaatct     11580
     gaaactgaat caaatcttaa aatattggag gcccaactat tcatgaacca cataactatt     11640
     aatccgagca ttttattggc tcatcatcat gttttacaaa ctaaaaatgc catttatcca     11700
     tacagcaaag ttcaagtaaa atcatttaca atatatccag gaaataatac attatcaatt     11760
     gacaatgcag ttattggaca gcttcccaat tttttggctt tttgcatggt aaaaaacaaa     11820
     tcatattctg gaaatcgggc attaaacccc ttcaattttg atcattttaa aattcaacgc     11880
     tttaatctat tggttaatgg agtacaagta ccatcgcagg cacttgagtt tgatttctcg     11940
     aactctgaaa atgctcaaag ctctagagga tataatatgc tattcagatc aagtggaata     12000
     aaacattatg atcgaggctt acaaattaca aaggaaatgt ttgataaaaa tagttttata     12060
     ttagcatttg acctaactgc agaccatcac aattcaactg tatgctcaaa tttaatatca     12120
     caaggagcca tccgaattga aggacgattt tcggagcctc ttacagaagc agttacttgt     12180
     ctggtatact gtgaatatga ctcaatgatt gatattgata aacatagaaa tattcgtgtt     12240
     ctattgtaaa aatgaataca ttgcaaatcg ataagttgct ttccaagcat tcaaaaacaa     12300
     aaasaatttt taaaggagtt tatccctctg atcagctgcc tcaagtaatt tcgaaatatc     12360
     ctgctttaat aatagcaaac acagattctt caagccattc aggaactcat tgggttgctt     12420
     tttactttga aaacaaatat tcagcmgaat tttttgattc atatggtcaa tatccccaaa     12480
     ataaagaatt tttaaaaata ttaaggaaaa attccacaaa gtttacattt aataaacaac     12540
     cactgcaagg ttatttttca aatacatgcg gtcattactg tatcctatat ggaatattta     12600
     aaagcagcaa aaaaacatta aattgttttt taaaacaatt taagaaaaat gattttaact     12660
     ataatgataa gttaataata maaatgttta agaaaattcg tttaaaataa aacacaatat     12720
     tatttcagag acatttaaga tgtttattga ttttttgagc tgggatacat tcttttattt     12780
     aagttatagt actttaacat taggtctata gcttctgctt tcttatttgg tagggtatga     12840
     cacaggcatg tgtcaggtcc gtccgttgca tcgtcatcac tccaggggca tagcttataa     12900
     tgaaagccaa acttggagta ctgaagctcc ttttcctcca gatcctccaa aatgctcatc     12960
     aaattttcaa gaatttgtac gtgctcctcg aagatcatct cctcgaattg cattaaaaaa     13020
     agttttattt gtttggcatg catcttgcag ctgacttctt gaatctatta ctgataatga     13080
     ttcaaagagc aggactcttt atatccacgt ctttgctctg tttcccttat atttttcttt     13140
     acccatgtat tggaaatgat aagtactata tctagccatc tcttttttac atatgtgtgt     13200
     atattcttaa cctttttctt tatttttgtc tttacatgta tagttgtctc ttcttctctt     13260
     acatatatat aatgggaact ctttatttac tctttacata taaattggaa atgggcagtg     13320
     ctatatctat tcatctcttt tcctttatat ataagatgtg agattccatg ctccttcaac     13380
     atcttaaagg gtgtttttgt ggaaaatttg gtcacataac ttttaggtaa aaatatccaa     13440
     agcggttcgt tgtccttatc agttaaataa aggactactt tatttccaaa tgatgttttt     13500
     ttgattttac atccattgat cttgtactca aatcctatgc acaggtcctc aaccttggtg     13560
     tatccaaccg ccggctttgt ctcgttaagt aattctagga aagcctaggt atatatttga     13620
     tkaagtgctt atcattttct atatagagat ttaaatattc ttacatacca ttatagtaat     13680
     agaaactatt caaactacta atgattttat actaaattat ttgaaagatt gcatgatctt     13740
     ttatactctc attaattcaa ttttatacaa atgtgatctg ggtagattgg tagttgagag     13800
     ataataagta aatggtttta aagctgtaat ggccagatgt cttaagtctg attggttgtt     13860
     gagtaataag ggatgaatta tggacacact gctgtatatt ggttcaaata ttatatttac     13920
     attttcggtc ttatataacc gtcaacatga aaaaattata taaacagaaa caaaatgcat     13980
     agaatttttg tttaaatgct gatcacttcc tatataagaa ctgtaagtta ctgagatagg     14040
     ttagttcact ttcacttcga aatgaggaca tttcattgcg agttgtgtta tgtaaaaaca     14100
     tcttttagtt cctgcaatga actgaaaaaa cacaccttaa aaatccacaa ctttagttat     14160
     tcaaaatcaa aatcatcatt ttatcgatgt tacttatgtc caggagctga actgttttgg     14220
     ttgagaattg acttcatatg catattttat ttaagcataa catggaatta aagcgaaaaa     14280
     tataaaataa atattaaaaa taaaataatc tgtgcgtttt taaatataaa tacctttaca     14340
     taaatttacc aactaagtat aatatgatgt gaaaatgaat caataaattc attcaaaagc     14400
     atcagtattc tacctgaaat ccacttattc tttttgtgta atcctcactt ggaagaaacc     14460
     tgtttcaaac gaatcctatg attctcttst aataagagga agtgaaattc aaccaatcaa     14520
     aagtaaaaca gaaaacattt aaaataaata gtgtttaaat gtgttatatt tattatatat     14580
     gtacatatgt atatattatt tttagaaaaa tatataaaat attcttatta tataaatatg     14640
     tattcgtatt gttaaaattt cgcctcagct aattttaccg cagcaattaa gtcatcatca     14700
     tcttcgtcat catcgtcccg aagtagttcc tggagtcgag atcttttatc atcatcctga     14760
     ttatctacta aatcgaaaat gttgtcatca tccgggaaaa tgkatgatgg attatcatta     14820
     ttaggcgttg cattccttgg gtcatcgtcg kcatcatccc atttaatgtc acttaaccag     14880
     ktsaagttgc tctcgagata ggtttgggtc ttawtcccaa aaatcaagga caggtctacg     14940
     gagctcggct gagagtccag atttatggtt gattccggtt gggaatcgat aaaaatgatt     15000
     tcgaggtcat ccatcgttgt tgaaagatta ctagtttatg tactagctgt tagctgtgag     15060
     tagttattat ataggcactt tgctatggga cagtgttagg tacacaaagg aggaatataa     15120
     attatagaga aagtagaaag gttcaagggc atcgaaaccg tttttcagga aacacttaaa     15180
     aaatacctct aaactatcac attagattca ttgcttgagg gttgtttgat cgcaacacgg     15240
     gaccaatcgt aaaaacaggt tcattgacag taaggggagg agagagaata taaatgagcg     15300
     aaggatcgat ttgagaggat tttacatggt tgagaaggag gattgagatc gaagttagtt     15360
     cacattatca ccgataggtg gcgccaccaa gtagtaagga taagggacag ccgtatattt     15420
     actmtaakta gcattaatta attttkatgt cttcctatta taattttatt ctttgtgtgc     15480
     tcctgtatat atctccatta atttgtgttc tcttaccwtt caaccctcta tacggacatc     15540
     tagawaccca gktttccaac ctatgttttc tataggatgt aaatttcaga aacttcacac     15600
     atttgttttc ccaattcaat gctwataaaa tatcctataa gtatttattt wamwtgacca     15660
     gttaataaca tagcagaaat tgkttcccaa ttcaatgtta ataaaatacc ttataagtaw     15720
     twatttaaca tgatcacgta ataacatagc aatatgatsc acacctacat tcaacatgct     15780
     gccaagstgc acatgct                                                    15797
//
ID   Polinton-1_DSer repbase;    DNA;    INV; 15210 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-15210
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1841-1841 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 6-bp TSDs. 604/609-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1310..2281
FT                 /product="Polinton-1_DSer_1p"
FT                 /translation="MYANNINFNNMQGIFCNSCQQNLPINVQWHHHVRTEQ
FT                 HKYFATRPLDGQVKQIIDGYKGRILQYMFTNEGAALRIPGEFLHEAGQALL
FT                 PHIERVLSFHTASKINFELFAEYMLVKEHETQVEIKSFQSKMSLVTISSNL
FT                 FDLYDSHTDSIKSKMDEFQEKDSGWTLTRILRVELNMLQCVPLKGSEYFDL
FT                 PARLKARRACVNVQNKDVFCFKWAIVSGLNPKEKGERCCVYDVDIKSSIIH
FT                 TNNIRIDFTGLTFPMKTDKINVFIQKNPHISLNVFGYDEDKDTIFGPLYTN
FT                 GSEKQHHLNLLYLDGPTTDINGHYVWIKNISG"
FT   CDS           2826..5273
FT                 /product="Polinton-1_DSer_2p"
FT                 /note="DNA polymerase B."
FT                 /translation="MNYVVPLQMSAQDSYDFDEALNCHICKGILGSDRVRD
FT                 HCHFTGQFRGAAHSECNLKYKTGDFIPVFFHNLSKYDSHLFVKELGEIDGE
FT                 IKIIPLNKELYISISKYIPLGKNKMEIRFLDTIRFMPSSLDKLAGNLNEGD
FT                 FKVLRNQFPNVKDFSLLRRKGVFPYEYLDSDKKLLETSLPPRENFYSKLTD
FT                 SECSEADYLHAVQVWSHFKCQTLRDYLELYLKTDVLLLTDVFQNFRAICSN
FT                 IYQLDPAHYYTTPGLSWDAMLKTTGISLELLTDIDMITYIQSGIRGGLVQS
FT                 SHRYTKANHKYLEDFDPSKESEYLMYVDANNLYGWAMSEALPYGNFKWLNQ
FT                 PEIEMFNINSICDESEYGYILEVDLKYPYSLHDEHNDLPFCPGNRLPSKTS
FT                 KTPKLIADLCNKSKYIIHYKTLKQCIDNGLELEKVHSILEFKQKPWLKKYI
FT                 DINTEHRTRAKSNFEKDFFKLLNNSVYGKTMENSLKRKDIRLVTEWEAPPV
FT                 GPKGGRPRLCARDLIARSNFHSATKFSENMYAIQMNRLHNVCDKPTYLGFV
FT                 VLELSKWKMYDFHYSYMKPKFQNALKLNYMDTDSFIYSIKTEDLYSDIRED
FT                 VALKFDTSEYPDQLARLYNFQQCNKKRLGFFKDELQGRSMTEFVGLRSKMY
FT                 AYTAAGVGSEPKTCVKKNKGVKRSCLEKITFNNYKNCLFTGQQECDSMYMF
FT                 RSRGHEISTLKITKITLDNKDDKRVICDDGISTLAIGHYKTVRREIEGCMT
FT                 ALEADSRVWLSRMSALGNTQNNEGERRTLKRKLEDTESALDEFEENLIWHY
FT                 ISMDKMRDPKIVFK"
FT   CDS           6391..5474
FT                 /product="Polinton-1_DSer_3p"
FT                 /note="integrase."
FT                 /translation="MSRRGIINELHAPARKHFLRRRVITKGINSLWQADLV
FT                 EMGKYSASNNGYRFLLTVIDTFSKFAWGEALKSKSAKDVVEAMEKIFKSGR
FT                 GVPKHLQTDDGKEFFNEQFKSLMKRHQINHYSTFSTLKASIVERFNRTLKE
FT                 LMWKEFSYNGSYKWVEIYKKLINFYNNKIHRTIKMAPIDVNVENEKHILGT
FT                 VYNNIKMFTGSKLKIGDNVRISKYKGVFEKSYTPNWNVEIFRIYKVQNTYP
FT                 TTYLLEDLNGNPIKGGFYKEELKKTRFPNTYLVEKVLKREGKRCLVRWLGF
FT                 PKTDDSWINNSEIL"
FT   CDS           9547..8987
FT                 /product="Polinton-1_DSer_5p"
FT                 /translation="MFSSSGIKSGTSSRKNIIQRRTSAKTSHQPPATSSTP
FT                 SKMKMFASSTASNSSTSSTASTSSTGTNTNSTTSTTITNLPEGVSQEDLNA
FT                 LMRDIEQDPLMLALNECRVKGKLSFSKLPVNMEFDIFSARRVAGKFGQNIM
FT                 LELANVLIYLPDRYNAIEDSLIYFFNSKCYTLIKRDDGNIDFNLKNVE"
FT   CDS           8131..6998
FT                 /product="Polinton-1_DSer_4p"
FT                 /translation="MNQNILSQLNKTRNALKKKFSELKQFKTQNIMGLEET
FT                 FKPITDPLNELVNNNKNINKKFLSNTEGDNQNDQFEFDKEIKTPLMKKRKL
FT                 TFYTAATKNSKPKYDAYKPLDWRLKSDDEYDNISGGDEVDENDQFYSQSVI
FT                 DDDSSFSPPDHHSHQSSPVLSNQATAHTTQTSPHTSPLIRSPPSVLEQSSK
FT                 NFNVSELARDHILDKTYGPYKNDSGQLMLGNNQINVSNNTIEFEDGQNWKL
FT                 TSGLYSLIFHHLPKNYNTDDLELYREILQKTNAYRRNFLPNGQVKGTRALK
FT                 YSQIIKPLLANLPVTKSTPKRDKENVTGSGFMSLERNKPNYVYWDDPNELV
FT                 ERLQLLIASETAGNTNHTNEITSIIEELREAKIIF"
FT   CDS           10845..10015
FT                 /product="Polinton-1_DSer_6p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MGKHFYNIISHKSNVKQGTGIINNLINTLPFEAHIPG
FT                 YNYCGPGTNLEKRLLRGDRGINGLDEACREHDIAYSNSKDLSERHKADSIL
FT                 IDRARDRVKALNSSISERAAAYFVSNVMKLKKKFGMGTKQQKKKVVKKTLA
FT                 SIIRKATIELRKNKPLDLLNAVKVARSAVSNSMGCRKNVVIPRVIAVPKIG
FT                 GFLPLVPILTALSAVGSLASGSAAIVKSINNAKMAKAQLEENQRHNRKMES
FT                 VALGKGLYLHPYKKGYGISFTKNNNTNKQKRNQKNY"
FT   CDS           11659..12354
FT                 /product="Polinton-1_DSer_7p"
FT                 /translation="MSTSLTIALNGNTSVLSEHFFPQIELNRNYECALIDF
FT                 YTFNSIPNVDKGNNLFHIGNKVIEIPIGSYEFEDIIKYIFNKLKEYELHNS
FT                 VTIECNTNTLQVQVVSKKETVYFNHQRSIGRLFGFNKRKLRPNENEIYVSD
FT                 NPVNILKINSVRLECNIVSGSYVGNKPNHVLHEFGINVPPGYKMNITPHNL
FT                 IYLPVNTREISTLEVRITDQNGELINLRGETVSIRLHLRSTE"
FT   CDS           12549..13742
FT                 /product="Polinton-1_DSer_8p"
FT                 /translation="MNEIFYVQEKPVNDESIVKKELHTYYPYQQNFKPNDE
FT                 VRITIQNQDLYVLPCESFLHFEGTLSKIIDTNTGTTSTNGVTGMLKNNCMA
FT                 YFLDEIRYELNGCELDRTRFTGITTTIKNFLSVGQQEGVLCRNAGWSGGDN
FT                 IPSGGHFSFSVPLKMLMGFAEDYKKVVLNCKHELVLLLTKNTDDMYIKTVD
FT                 GKTHNIAIHNICWKIPHIVPSDSAKIKMFNVVKSGATLPLAFRSWDCYINP
FT                 TLVQGTHHIWNVKLAANRERPRFAVIAFTLNGQLITNNLRNAKVYLNSEVY
FT                 PYEDLNIKYNENRFAVLYDMYTKFQESYYNREPRALLSPIEFIRKAPVVVV
FT                 DLSYQNESVKSGPIDVKISTELSVASEMNTKVYCLLIHDRLVEYTPLSGLV
FT                 QRIV"
XX
SQ   Sequence 15210 BP; 4944 A; 2670 C; 2774 G; 4819 T; 3 other;
     agtagtataa aaacgggatt ttcgggacct ttgatgtcgg caaaaggggt aataaaaatg        60
     caattaatgg gttagctgtc aaaacattta attgctttga gtaataaaaa tgcaattaat       120
     gagggttagc tgtcaacctg tcaatggatg ggggtaataa agatgcaatt aattagggtc       180
     agtgtatgta aaaggacact tgtgaacaag tgttcaagcg ccccaacaag gatgtggata       240
     cgagtgcgaa agggagggga gcgatcccga gcgatcccgg agcgcacgtg tacgttccca       300
     cgaccctcac tgaaagaaag ggacggggga ggcaattgaa aaggtcgcac cgcagcgatc       360
     ctgggccgca tcgatcccgt tcacgcacgt ggacgttgac ccacaatcct cacttaaaaa       420
     agggacgggg gtggaatgga agaagggtgc taacggaaaa atccacgctc tgctcgatcc       480
     tcgagcgcac ttggacgttg accctcaatc ctcacttaaa aaagggacgg gggtgaaatg       540
     gaaaattcca cgcccacgct ctgctcgatc atgttcacgc acgtggacgt tcacccacga       600
     tcctcactta aaaaagggat ggatgtgatt ttccttgaga gaaacacaca attccctcct       660
     tgaaaaagga tgggaggaag gggttttccc acactcattg catctggagt tgttcgaatg       720
     cgtgtgatga catatacaat tagcttatct aaataggggt ggtgggtgaa agggatacac       780
     ttgtaacggt ttctcagtga aggcggagct ggctttaaaa aggatggaaa gggtaagaaa       840
     atgtcaagtg tttggtatac attttctgat tttcgtgggt ccgcgtatga actagttgag       900
     tactaagaat cacttctagt tggcggtttg atctatccag agtggaaaaa ttaaataaat       960
     ttttaaaagt ttatcaaaaa tttataaagt ttattaaaaa atttataaag tgcaaacgtg      1020
     caaaagtgca aagtgcaaaa gtgcaaaact acaaaagtgt aaaagcacag aacagaaaaa      1080
     aaaatattaa gttaaattaa ataaaaatca aaaacaaaaa acaatcaacc atcaacaaaa      1140
     aacaatcaac aaaaatcaaa aacaaaaaac aatcaacaaa aaacaatcat caaaaaacaa      1200
     aatcatcatc atcatcatca tcatcatcat catcatcatc ttcatcttca tcatcatctt      1260
     catcttcatc ttcatcacca tcatcgtcat caacaccatc agtacaaaaa tgtatgccaa      1320
     caacatcaac ttcaacaaca tgcaaggaat tttctgcaac tcctgtcagc agaaccttcc      1380
     aattaatgtg caatggcatc accatgttcg cacagaacag cacaaatatt ttgctacccg      1440
     acccctagat gggcaagtaa agcaaattat tgatggatac aagggacgta tccttcaata      1500
     tatgtttacg aatgagggag cagctctaag gattcctggt gaatttttgc atgaagcggg      1560
     ccaggcgctg ctccctcata ttgaaagagt cctcagtttc catacagctt caaaaataaa      1620
     ttttgagctg tttgcggagt acatgttagt aaaagaacat gaaacgcaag tggaaattaa      1680
     atcgttccaa agtaagatga gtttggttac gatatcatcc aacctatttg atttatacga      1740
     ttcccatacg gatagtataa aatcgaaaat ggatgagttc caagagaagg acagtggatg      1800
     gaccctaaca cgcatactta gggtggagtt gaacatgctt caatgtgttc ctctcaaagg      1860
     atcggaatat ttcgatctac ctgcacgcct taaagcccgt agagcatgcg tcaatgtaca      1920
     gaacaaggat gttttctgtt ttaagtgggc aatcgtatcc ggattaaacc caaaggaaaa      1980
     gggagagcgg tgttgtgtgt atgatgttga tatcaaatca agcatcatac acacaaacaa      2040
     catcagaatc gattttactg ggttgacatt cccaatgaaa acggataaaa taaatgtatt      2100
     catccaaaaa aaccctcaca taagtcttaa tgtgtttggg tatgacgagg ataaggacac      2160
     tatttttgga cccctctata caaatggaag tgagaagcag catcatctca atttgctgta      2220
     tctggatgga cctaccaccg atattaatgg acattatgtg tggatcaaaa atatttccgg      2280
     gtaagcacac tcaaaaaaaa aaaaaaaaaa taaataaata aataaataat aaaacaaaaa      2340
     aaataaaaaa tatataaata tatggtatga tgataattga ctaactcaat ttttaattgt      2400
     taaattccag cctcctatct tcacagttag gaaaaaaagg aaataggcga tggttctgca      2460
     acaagtgcct ttccttttca acgagtgagg aaagggctca caggcactct gaaagatgca      2520
     gcaacattgt gtctcaacag cctaaggaag gggaaaatga cgtcaaattt aagaatgtcc      2580
     atcgccagct ggaggtgccc ttcgctgtgt atgcagactt cgaatgcata cttgagccca      2640
     caacaataga tgtaagtgaa aaaacccaat tagtaaataa gcatgtcccg atagcctttg      2700
     catattatat caaatgttca ttcgacccct cgttagaaaa atttgtatct aagaccggat      2760
     taaatgtcgg gcgcactttt gtagatagtt taacatccga tttgtccgct atttaccaaa      2820
     actacatgaa ttatgtagta ccacttcaaa tgagtgcaca ggattcgtat gattttgacg      2880
     aggccctcaa ttgccacata tgtaagggaa ttttaggtag cgatagagtc agggatcact      2940
     gccattttac tgggcaattt cgaggtgcag cacatagtga gtgcaacctt aaatataaga      3000
     caggagattt tatacctgtt ttcttccaca atctatccaa atacgattca cacttgtttg      3060
     tgaaagaact tggggagatt gatggagaaa ttaaaataat tcctttgaat aaggaattat      3120
     atatttccat ttctaaatat attccattag ggaaaaataa gatggaaatt agatttttag      3180
     ataccattcg cttcatgccc tctagcctag acaaacttgc aggaaattta aatgaagggg      3240
     atttcaaagt tcttcgaaat caatttccaa acgtaaaaga cttctcccta cttcgtagga      3300
     aaggtgtatt cccatatgaa tacttggatt ctgataaaaa attattagaa acctctctcc      3360
     cacctcgaga aaatttttat agtaaattga cagactccga atgctctgaa gctgattatc      3420
     ttcatgccgt tcaggtttgg agtcacttca agtgtcaaac acttagagat tatttggaac      3480
     tctatttaaa gacagatgtt ttgttgctca cagacgtttt tcagaatttt agggctattt      3540
     gctcaaatat ctaccaactc gatcctgccc attattacac aactccaggc ttgtcatggg      3600
     atgcgatgtt gaaaactaca ggaatatccc tcgaattact gactgatatt gatatgataa      3660
     catatattca atctggaatt cgagggggac ttgttcaaag tagtcataga tataccaaag      3720
     caaaccacaa atatcttgaa gattttgacc cgagtaagga gtcagaatat ttaatgtatg      3780
     tggatgctaa taatttatat ggatgggcaa tgtcagaagc actcccttat ggaaatttta      3840
     aatggttgaa tcaaccagaa atagaaatgt ttaatattaa ttctatttgt gatgaaagcg      3900
     agtatggata tattttagag gtagacttga aatatccata ctcgcttcac gatgagcaca      3960
     atgacctgcc tttctgtcct gggaacagac tcccttcaaa aacgtcaaag actcccaaat      4020
     taatagccga tctttgtaat aaatccaaat atatcataca ctataaaact ttaaagcagt      4080
     gtatagataa tggtttagag ctcgaaaagg tacatagtat cctcgaattc aagcaaaaac      4140
     cgtggcttaa aaaatatatt gatattaaca cagagcatag gactagggct aaaagtaatt      4200
     ttgagaaaga cttttttaag cttttaaaca actctgtcta tggcaagacg atggagaata      4260
     gcttaaagcg caaggacatt cgcctagtaa cagaatggga agctccacct gtgggtccca      4320
     aaggtgggcg tcctaggtta tgtgctaggg acttaatagc cagatccaat tttcacagtg      4380
     caacaaagtt tagtgaaaac atgtatgcaa ttcaaatgaa tagacttcat aacgtttgtg      4440
     ataagccaac atacctgggt tttgtagtgt tggagttatc caaatggaag atgtatgatt      4500
     ttcactactc atatatgaaa cccaaatttc agaatgcact taaattaaat tatatggata      4560
     cagattcatt tatctactct attaaaacag aggatttata tagtgacatt cgtgaagatg      4620
     ttgctttaaa atttgataca tctgaatatc cagatcaatt ggctaggcta tataatttcc      4680
     agcagtgtaa taagaagcgc ttagggttct tcaaagacga actgcagggt aggtcaatga      4740
     ctgagtttgt gggtcttcgc tcaaaaatgt atgcctacac agcagcgggt gtaggtagcg      4800
     agcccaaaac atgtgttaag aaaaataagg gagtgaaacg aagttgtttg gagaagataa      4860
     cttttaacaa ttataaaaat tgtttgttca caggtcaaca agaatgtgat agcatgtaca      4920
     tgtttaggtc gagagggcat gaaataagta cattaaaaat tacaaaaata actttagata      4980
     ataaggatga taaaagagtt atatgtgatg atggaatatc cactctagca ataggtcatt      5040
     acaaaacagt tcgtagggaa attgaaggct gtatgacagc tctagaagca gattcaaggg      5100
     tttggcttag ccgaatgtct gctctaggaa acacccaaaa taatgagggt gagagaagaa      5160
     ctcttaaaag aaaattagaa gataccgaaa gtgcgctcga cgaattcgaa gaaaatttaa      5220
     tttggcatta tatttcgatg gataaaatga gagatccaaa aattgtattt aaataaaaac      5280
     atcatatatt ttgtattact agtataataa tttatttaaa aatacttact ttaagactaa      5340
     taataaatta aatctatgtg tatataatat taagattaga ataaaattaa atgaatgaaa      5400
     aaaaaaaaaa atataatata taaaaataaa tatccaaaga aaacataaaa ctgtttgtgt      5460
     ctttatttca ttataaaatt tcagagttat ttatccagct gtcgtcggtt ttcgggaaac      5520
     ccaaccaacg tacaagacat ctttttccct ctcttttaag taccttctca actaggtagg      5580
     tattgggaaa tctagttttt tttagctctt ccttatagaa tccaccctta ataggatttc      5640
     cattcaagtc ttctaataga tatgtggttg gatatgtatt ttgaactttg tatatcctaa      5700
     aaatttcaac attccaatta ggtgtgtatg atttctcaaa tactccctta tattttgaaa      5760
     ttcgaacatt gtcaccaatt ttcagtttgc tacctgtaaa catttttata ttattgtata      5820
     ccgttcccaa gatgtgtttc tcattctcaa cattcacatc gataggagcc atttttatag      5880
     tcctgtgtat tttgttgttg taaaagttaa ttaatttttt gtagatttca acccacttat      5940
     agctcccgtt gtaagaaaac tctttccaca taagttcttt taatgttctg ttgaatctct      6000
     caacaattga agcctttaaa gtactaaatg ttgaataatg atttatttga tgtcgtttca      6060
     tcaaagactt aaattgttcg ttaaaaaact cttttccatc atctgtttga agatgttttg      6120
     gtactccacg cccagattta aatattttct ccattgcttc aacaacatct tttgcagact      6180
     tagacttaag tgcttcaccc cacgcaaatt tcgagaatgt gtcaattact gttagtagga      6240
     agcgatatcc attattcgag gcagagtact ttcccatttc caccagatca gcctgccata      6300
     acgaatttat tccctttgta ataaccctcc gacgtagaaa atgtttgcgc gcaggagcgt      6360
     gtaattcatt aataattcct cgcctactca ttatcaggta aaagactatt caattatttc      6420
     gaaaatccta ttttttcaat aatagatgag acaacaacct ccagtctctc tattcgatct      6480
     tcaatatctg cagttttcac atcaggaata ctaacaatta attcttgttg atgtgaaata      6540
     atagaatccc tcagcctctt tacagacttg tcgacgtatt ccttgttggc tatatcttta      6600
     gcttctttgg gaatcccaac atttttttca cgttgaatat taaaattacc ctctgtatca      6660
     gtatcgattc ccgtaacacc atcaaaactt tgaccaattg cttcttgaaa ttttgtaatc      6720
     aatgatgtta aggatactct caactcatga atagctttat caacatattc tttgatgacg      6780
     atgtctgcgt tttcttttgg gaagccacca ttttttatac gtcttttttg tatattaaag      6840
     tttccatcag tatctaggta gagtcccgtc tcagttttct catatcgttt taaattatta      6900
     gtgttgtgct tttcatggat ataacgtcca aacttgtcaa cggtcatgat gagtataatc      6960
     tcatttgaat atttcaacat aaatatatac taaattagaa tataattttg gcctctcgga      7020
     gctcttcaat tatcgatgta atttcgtttg tgtgatttgt atttccagct gtttccgaag      7080
     ctattaaaag ttgaagtcgt tccactaact catttggatc gtcccagtat acataattag      7140
     gtttattcct ttcaagtgac atgaaaccag acccggttac gttttcttta tcgcgtttgg      7200
     gtgtagactt ggtgacgggt aaattagcta aaagtggttt gataatttga gaatatttta      7260
     atgctctcgt tcctttcact tgtccgtttg gtagaaaatt tcttcggtag gcattagttt      7320
     tttgtaaaat ttctctatat agctccagat catctgtatt ataatttttt ggaagatgat      7380
     ggaatattaa agaatataat ccgctagtga gtttccagtt ttgcccatcc tcaaactcaa      7440
     tcgtattatt tgatacattt atttgattat tccccaacat taattgacca gagtcatttt      7500
     tgtatggtcc atatgtttta tccaaaatat gatctcgtgc tagttcacta acattaaaat      7560
     tttttgaact ctgttcaagc actgagggtg gagatctaat caatggtgat gtatgggggg      7620
     aggtttgagt tgtgtgagca gttgcttgat ttgataatac tggtgatgat tgatgtgagt      7680
     gatgatccgg tggtgagaat gaagaatcat catctataac tgattgggaa taaaattgat      7740
     cgttctcgtc cacctcatcc ccaccagaaa tattatcata ttcatcatca ctttttaatc      7800
     tccaatccaa tggtttgtat gcatcatatt tgggttttga attttttgta gctgcagtgt      7860
     aaaatgttag tttccttttt ttcataagcg gagttttaat ctctttgtca aattcaaatt      7920
     gatcattttg attgtctccc tctgtattgg acaggaattt tttgttaata tttttattat      7980
     tattaacaag ttcatttaat ggatcagtta tgggtttaaa tgtttcttcc aaacccataa      8040
     tattctgggt cttaaattgt tttaactctg aaaacttttt tttcaaagca tttcgagttt      8100
     tatttaattg tgataaaata ttttggttca ttgtgatgta atttgaaaat atttaaattc      8160
     gaagaataag agtggttatt tcagtcttgg ggttgggaat gtactgagaa aaaatttatt      8220
     aatcataagc atatatacat atatatttaa agaggtgtgg tattatctga tgtaataatc      8280
     agacctggta ttaacaggtg tgataaacag acctggttgt aagacctgat ctgataaaca      8340
     gacctggtat taacaggtct gataaacaga cctggttgta cgacctgatc tgatctgata      8400
     aacagacctg gtattaacag gtcgcagacc tggttgtacg acctgatctg atctgataaa      8460
     cagacctggt attaacaggt ctgataaaca gacctggttg tacgacctga tctgatctga      8520
     taaacagacc tggtattaac aggtctgata aacagacctg gttgtacgac ctgatctgat      8580
     ctgataaaca gagctggttg tacgacctga ttaagatttt aaagaatctg aaaaataaag      8640
     ttgtgaaaaa aaaaatatac ccaatatatt tcccaataat aaaaaatttt gaatttaatt      8700
     taatttaatt tattatgaaa attaattttt taaattttaa acaatctgaa aaataaatgc      8760
     tgaaaaagaa ccccaactcc catttcctaa tattaaaaaa atttcgattt tagtttacat      8820
     tttttaattt tatttttatt tatattttaa attttgtaag ttctgaaaaa taaaaatgct      8880
     gaaaaaaaga tccccaatac ccatttccca ataataaaaa ttttatttta agtttaaaaa      8940
     ttgtttattt tatttattta ttttttaatt tttttaaaag ctattattcc acatttttta      9000
     aattaaaatc tatattacca tcatcccttt tgataagggt gtagcattta gaattaaaga      9060
     aataaataag gctatcttca atagcattgt atctatcagg aagatagatc aatacattgg      9120
     caagttcgag cattatattt tgcccaaact tgccagctac cctcctcgct gaaaaaatgt      9180
     caaactccat gttgacaggg agtttgctaa agctgagctt acccttaacc ctacattcgt      9240
     taagggcaag catcagcgga tcctgctcaa tgtccctcat cagggcattg aggtcctcct      9300
     gagatacccc ttcgggtaaa ttggtgatgg tggtggaggt ggtggagttg gtgttggtgc      9360
     cggtggagct ggtggaggcg gtggagctgg tggagctgtt ggaggcggtg gagctggcaa      9420
     acatcttcat ttttgatgga gttgagctgg tggctggtgg ctggtggctg gtcttggcgc      9480
     tggttcttcg ctgaatgata tttttcctag acgaggtccc tgattttata cccgacgagg      9540
     agaacatttc tcctcctccg actacacagc atatgtggaa tgggagggga ttctaagaaa      9600
     cgtctatcga ctcatattgt ccacttcatg taaagtgaag gttaggcagg acatggcttg      9660
     aattgcactc tagtaaaaat ttgatacata aatgcccaca gttaaaagta ccaaattttt      9720
     ggaaacgatt gtaattatat tttatatttt tacccaaata tcttattact tctaatggag      9780
     gttgtaaatt cccaaaacta tcaaagtaaa acgagtgtgt ccccttctta aaataggcta      9840
     cccaatgcgt tccttctgat gtcgagtctg ctaaatttat tattccacat tcagaatgat      9900
     gaggaaattt cggtatttca tctttcatat aaactcctcg aaaatgagga atatttttaa      9960
     aggcaaactt caatatatca aaattcgata acgctctatt aggtagctca tttagtagtt     10020
     tttttgattg cgtttttgtt tgttggtatt attatttttt gtaaatgata taccgtaacc     10080
     tttcttgtat ggatgtaaat acaatccctt gcctaacgct accgattcca tttttctatt     10140
     atgtctctgg ttttcctcaa gttgtgcctt tgccatcttt gcattgttaa tagactttac     10200
     aattgcagcg ctacctgatg ctaaacttcc cacagcgcta agggctgtta aaataggtac     10260
     caatggtaaa aaaccaccaa ttttagggac tgctataacc cgtggaatta caacattttt     10320
     cctacacccc atagagttag atactgcaga gcgagccact tttactgcat tcaataagtc     10380
     aagaggttta ttctttcgca attcgattgt tgcctttctg atgattgagg caagagtttt     10440
     ttttacaact ttctttttct gctgctttgt tcccatccca aattttttct ttagcttcat     10500
     cacgttgctc acaaaatatg ctgcagctct ttcactaatg ctgctattca atgcttttac     10560
     acgatcccga gccctatcaa ttaagatgga atctgcttta tgtcgttcac tcaagtcctt     10620
     gctatttgaa tatgctatgt cgtgttcccg acaagcctca tctaaaccat tgatccctcg     10680
     gtcaccacga agtaatcgtt tctcaaggtt tgtgccaggt ccacagtaat tgtacccagg     10740
     tatatgagcc tcaaagggta aagtgtttat taaattattt atgataccag ttccctgttt     10800
     cacatttgat ttatgactga ttatattata aaaatgtttc cccattttat atcaacctca     10860
     attaacgaat gattgtcctc gaatgaagta cttatcttca aatcatgcgt ttattaagac     10920
     aaaataaaag tatcacagta agaaacattg aaggtggtgt gcatggtgaa attactcatc     10980
     cacgacacag ttcattgtta ccaaacacaa ttagagcttt aattgttgga ccatccaatt     11040
     gtggaaaaac caatgtgatg ataagtctta tcgaaagtcc aaatggctta aaatttgaaa     11100
     atatttacat attttcaaag agtttatatc aaccaaaata tgagtatttg gaaaatcttg     11160
     tgaaaccaat acgaggaatg ggatattata cattttcgtc aaatgatagt gttttgtcac     11220
     cagaagaagc aaaaaacaat tccattatga tatttgatga tgtcgcatcc gaaaaacaag     11280
     ataatattcg agattatttt tgtatgggac gacataggaa gattgattca ttctatttat     11340
     ctcaaacgta tacacatatt ccgaaacatt taattcgaga caatgcgaat tttattataa     11400
     tgtttaaaca ggatgactta aacatgcgtc gtatatatcg agatcatgtt aacagcgata     11460
     tggattataa ttcattcatg aatatatcaa gaaggtgttg ggaagataaa tttggatttc     11520
     ttctaatctc taaggatgat gatatgaaaa ctggacgata cagaaaagga ttcgatcagt     11580
     ttattattct cgaataaata ataatataag tataatgaag ttgataaaaa aacatacagt     11640
     tcacgattaa gcttcataat gagtacatcg ctaacaattg ctttaaatgg aaacacatct     11700
     gtactaagcg aacatttttt tcctcaaatt gagttaaatc gtaattatga atgtgctcta     11760
     atcgactttt atacattcaa ttctataccg aatgtagata aggggaataa tctatttcat     11820
     attggaaaca aagtcataga aatacctata ggctcatatg agtttgagga tataataaaa     11880
     tatattttta ataagctcaa ggaatatgaa cttcacaata gtgtaacaat tgaatgtaac     11940
     accaatactt tacaagttca agttgttagt aaaaaagaga cagtatattt taatcatcaa     12000
     cgatcaattg gacgattatt tggatttaat aagcgtaaat taagaccaaa tgaaaatgaa     12060
     atttacgtct cggataaccc tgtaaatatt ttaaaaataa attctgttag attggagtgt     12120
     aacattgtta gtggatcata tgtggggaat aaaccaaatc atgtgcttca tgaatttgga     12180
     atcaatgttc cgcctggata taaaatgaac attacaccac acaacttgat ttatttacct     12240
     gtcaacacca gagaaataag cacactcgaa gtacggataa ctgatcaaaa cggagaatta     12300
     attaatttgc gtggagaaac tgtatcaatt cgtcttcact tacgatcaac agaatgatta     12360
     tttataataa aaagacgtta catagctcct ttgataacat tattaaacct acagttgaag     12420
     tgaaagcatc atcatcttca aaatcatcat catcaacccg aggtccttca aatcaacggc     12480
     cgactctcac attaaaaaat aaattgattt taaaatcatt gggatttaat attaaataaa     12540
     taattcaaat gaatgagatt ttttatgttc aagaaaaacc tgtcaatgat gaaagcattg     12600
     ttaaaaaaga actacatact tattatccat atcaacaaaa cttcaagcca aatgatgaag     12660
     ttcgtatcac aatacagaac caagatttgt atgtccttcc atgtgaaagt tttctccact     12720
     ttgagggaac acttagcaaa attattgaca caaatacagg aacgacttcg acaaatggag     12780
     ttactgggat gctcaaaaat aattgcatgg cctattttct agatgaaata agatatgagt     12840
     taaacgggtg tgaattggat aggacacggt ttactggaat tacaacaact attaagaact     12900
     ttctctcagt cggccaacag gaaggagttc tttgtcgtaa tgccgggtgg agtggtggag     12960
     acaatattcc ttcgggagga catttcagct tttctgtacc tttaaaaatg ttgatgggat     13020
     tcgctgaaga ctacaagaaa gtagtgttaa attgtaaaca tgagctcgtt ctcttgctta     13080
     caaaaaacac tgatgatatg tatattaaaa cagttgatgg aaaaacacac aatattgcta     13140
     tacataacat atgttggaag attccccaca tcgttccaag tgacagtgct aaaattaaaa     13200
     tgtttaatgt agtgaaaagt ggagctactc tcccactcgc attccggagt tgggattgtt     13260
     atattaatcc aacattggta cagggaacac atcatatctg gaatgtaaag ttggctgcaa     13320
     atagggaacg cccacgtttt gctgtcattg catttacgtt aaatggacag ctaattacaa     13380
     acaatttgag aaatgcaaaa gtatatctaa attctgaagt ctatccctat gaggatttga     13440
     atattaaata taatgagaat cggtttgccg tcttgtacga catgtataca aaattccaag     13500
     agagctacta caatcgagaa ccacgggcac ttctatcacc catcgagttt ataaggaagg     13560
     ctcctgtcgt tgttgttgat ctctcatacc agaatgagtc tgtaaaatca ggaccgattg     13620
     atgtaaaaat ttccacagag ctaagtgtgg cgagtgagat gaatacaaag gtatattgcc     13680
     ttctcatcca tgatcgacta gttgaatata caccattgag tggattagtt caacgtatcg     13740
     tctaaaaatt ttataggata agatcattca atttttataa tcattgggag tagacgtcca     13800
     cggagcaatc aaaaatgatg tcattggaaa acaaaaccaa acccacaacc tcttttacaa     13860
     tacatcaact tgtaattaga ataaataatt tcatgaaaat gtataagaat aaaattttcc     13920
     ccgaacacga gcaatatctg gaggattcga taaaatattt ccatcagagg atgcctgata     13980
     caccgctggt ttcaaatata catggacaac atttcacatc ttgctcttgg gcgaatgata     14040
     atgtcaacaa tggtctcgat acttgcgcct gtcatttttt agtgttcgct ctcaaaaatc     14100
     attaaaaatt atgaaaatgt atgttgattt agaacatcgc ttctgatatt tatcttgata     14160
     aataaattat aatatataaa taatatatat ccatttttat tgggaaaaaa gggttgggat     14220
     gtwttttttt ttcagtattt atttttcaga tttactcttt cacttaaaag tcacaattcc     14280
     atatcaaaga agggcacatc ttttggtcaa tgaaagaaag ggtggtgagg gtgatccttc     14340
     ctcgaatttg tgaaaggatg gggtggtggt gtgtgtaagc atgtactatc tcgcagggaa     14400
     aatccacgct cgtggtgtgc gtcattcata tggttgtact ttggttgttc cgttccaaac     14460
     atgtaccctt cttcaattcc acccccgttc cttttttaag tgatggtcgt gggtgatcgt     14520
     ccaagtgcgc tcgaggatcg agcaagcgtg gattttccgt tccaacatgt acctcccatt     14580
     ccaccgtccc wttcttaagt caggatcgtg ggtgatcgtc cagtgcgctc gaggatcgag     14640
     tagagcgtgg gcgtggaatt ttccgttagc acccttctcc attccacccc catccttttt     14700
     aagtgaggat tgagggtcaa cgtccaagtg cgctcgagga tcgagcagag cgtggatttt     14760
     tccgttagca ccttccatcc acccccgtcc ctttttaagt gaggattgtg ggtcaacgtc     14820
     cacgtgcgtg aacgggatcg atgcggccca ggatcgctgc ggtgcgacct tttcaattgc     14880
     ctcccccgtc cctttctttc agtgagggtc gtgggaacgt acacgtgcgc tccgggatcg     14940
     ctcgggatcg ctcccctccc tttcgcactc gtatccacat ccttgttggg gcgcttgaac     15000
     acttgttcac aagtgtcctt ttacatacac tgaccctaat taattgcatc tttattaccc     15060
     ccatccattg acaggttgac agctaaccmt cattaattgc attttattac tcaaagcaat     15120
     taaatgtttt gacagctaac ccattaattg catttttatt accccttttg ccgacatcaa     15180
     aggtcccgaa aatcccgttt ttatactact                                      15210
//
ID   Polinton-1_DSuz repbase;    DNA;    INV; 15277 BP.
XX
AC   .
XX
DT   08-JUN-2021 (Rel. 27.01, Created)
DT   08-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-15277
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 142-142 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 6-bp TSDs. ~940-bp TIRs.
XX
SQ   Sequence 15277 BP; 5010 A; 2575 C; 2527 G; 5165 T; 0 other;
     agtagtaggg aaagacgggt tctgggacaa ttagcatatt aatggccccc gccccccctc        60
     ccccctcatt aacgtatgcg ggttctggga caattagcat aatccaataa ataaactgat       120
     tttaatgggc tttgaagtca taaaaatgtc acgatcatgt ctataaagag tatacttaat       180
     tgcccccatc gcccccacat ccccatgtga caatattgat catgtatcct tcccctcatt       240
     atgtgcaatt aatagtcagg tgagaaaggt gcacgtgaga aaggtcgcac aaccatagta       300
     tccaaaggtt gttatcttag aggaacatat ccgatcatgt tggggaaagg tgtgatcacg       360
     tacccttttg cctcattatc acaggtgttg ctgtgcacgt gtgaaaggtc gcacacccaa       420
     agtattcaaa gatggttatc ttagaggaac atgtccgatc atgttgggga ataatgtttc       480
     ctatgattgt aaaactaatt tagaaatcaa aagaacccca ataaaataaa tctcacaagt       540
     taatgattct cagatgtgga atattttcaa atacacattt ttgtttccgc cccagaacgt       600
     ttaactggta aattgtctaa gattctctcc tttccacaaa tgggtcataa acatgtcata       660
     aaagggattc aagcaagagc tacccgaaca tgcgcacctg tcaattacct gaccgcaata       720
     aaagggacac atgcacaacc cagaaggcgc acgctcattg acaagatcat gggcctcacg       780
     ccaacgacct catacgagct catacgacgt tcccataata ggggttgaaa tcacgaccgc       840
     gcaacagctc gcaagtagcc gacatatctc agtcaaggaa atattttcca ttctccgtac       900
     ctgtaatttt aactcgaaat aaaaagtcag aagtttattt tggtactgcg aacatgtttt       960
     tattatgtta tttaatcatt ttcattcttt tttctagatt atagtattta ttcataatgt      1020
     tgagtgcttc ctttttgtaa tccgaaattc gatggcatac acaagtatca actccctcag      1080
     tggctgcatc attgctccac acgcaggtgt ccatatggtt tccatgaata gatgttttta      1140
     tattacctcg ttcacattca aagagttttg attgtatgaa ctggagccgt acatagtgtg      1200
     cattgaacag aattccgtca aatacattca aaaagttatt tattttaact gaatgcatgt      1260
     tgtctatcta agtcaacaat atcgtcttac ccttttaaat atgcttacac gatttataag      1320
     gaaatttcta caggttttca tcttcttctt ttacccaaaa aatatgcatt ctcgaaattc      1380
     aacaaatgaa aatctttgat ttttcctctt cttttaccca aaaatgtgca ttctcgaaat      1440
     tcaacaaatg aaaatctttg ttttttccct aactcgaaat gattttttcc aaactgtccc      1500
     ctattggcta cctgagtatg atggtgtgtc taaaaaatga cctttccttt cccacctgca      1560
     gcaaagtatg tgcgacctct tctaaccaac actctccttt attctatgat tttgtgtctc      1620
     ctttatcgat ttgatggtgt cctattggtt acacttgtat caaatatttt tcaaaatcaa      1680
     tacttctcat ctcttctaac caatgaatag tcgatgtaac ctactagaat tgcctatatt      1740
     gttttcaaat ttaaaaaaat cttaagtatg catctctcat cttcaatatt atcgttcacg      1800
     cccacttcaa acactataaa tgatcgagga caatagttag tctaccaaaa atagtcttga      1860
     agtgggatac tctgctacgt caaacacaac ttgagtaaaa gtgaaaaaag tgatcgtgaa      1920
     aaaagaattt taccaaaacg aataaaataa aaatgaataa ccaaaatcag ttttgtcaat      1980
     cctgcaagtg tttcttgcta aagaataagt gggcaaatca tgtccgttcg gagttgcata      2040
     agcgaaatgc aattcaaccc cttgacggaa gagtcaaaaa aatttctgag ggattcaagg      2100
     gaagaatact acattacatg tatgtaaacg atggatcgga cttgatctta ccagagagtt      2160
     tcttgagtga agctggattg tccctgctac ctcatctcag cattctgtta gaaagttata      2220
     cttcagcaaa agtcaacttt gaactgtttg cagagtatat actttttaaa gatgaatctg      2280
     aagaaattga tatgaaaagt tttcaaagta aaatgacgat catgaacaaa gattctgact      2340
     tagaaaatat cttccatgaa cataccatgg aaataatttc aaaaacacaa gaatttcaag      2400
     agagagatag tggatggtct cttataaaat tgattcgctt ggaaatgaat gtgaatcatt      2460
     atacaccgat ggctggttca tctttcatac cactacctcg tttcctttta acgaaaaaag      2520
     caatagttaa cgtttgtaac gaaaatgacc actattgttt taaatgggct ttgatttctg      2580
     ccttgaaaat tgttaacagg ccgcaaagat gttcggcata taatattgat atatcgctgg      2640
     agataattcg aataagtgat gaaataatat tagatttcac agggttgact ttcccccttg      2700
     aaataaaatg tataaaaaat tttttaaaga agaatactca tatgagttta aacgtattcg      2760
     gatataatga agagacgagg gaaataattg gaccactttt tcaatcggaa gtggaaaagc      2820
     ctcttcatat caatatgatg tttttggaag aaggtggaaa tggacattac atgtacatta      2880
     aaaatatttc aaggtaaatt cttttattca tttttatctc ttttaagcaa tgaaataatt      2940
     tgtatatatt tctctttcaa agactaatga ctgctcagag aggaaatcag aagagggcgc      3000
     aatatttctg caatgtgtgt ttaaattttt ccaaaactga ggaagctgca ttgaaacaca      3060
     aaacgctctg cagtaaaaag gtctcaaaga tgccacaccc ccagaataat acattggaat      3120
     ttacccaggt tcaacatcag cttcaagttc cattcgttgt ctacgcggat tttgaatgca      3180
     ttctggaacc gaaaaatctt gaagtgagcc ctaaattatt taatattaat gaacatattc      3240
     caatatcata tgcgtattat ataaagtgtg cttttgattc tagactagat aaatttgttt      3300
     tagaaacagg aaaaaattcg ggagtaagtt ttgtagattc attgataaaa aatctaacta      3360
     aattgagtga tgactactta aataaaatag ttcctatgag aatgactttg gatgaccaga      3420
     aaatatttga taattcattg aattgttcta tttgtcagaa agatttaggg actgataggg      3480
     ttagagatca ttgtcatttc acaggtcgct ttagaggtgc agcccactct aagtgtaact      3540
     tggattataa agttaacaaa ttcataccag tattttttca taatttttca aaatacgact      3600
     gtcatttgtt tattcaagag ttgggaaaga ttcccggtga aatttccgta ataccaataa      3660
     ataaggaaaa ctatatttct gtctcgaaga aaataaaaag tttaagtgga aatagttttg      3720
     aaattcgttt tctcgataca tatagattta tgccatcaag tttagattcc ctagcttcta      3780
     atttagttga cgatcaattg aacactgtaa aatcgttttt cagtaatgat atagaatttc      3840
     gactaatgcg taagaagggt atatttccct atgaatattt agattccgcc agtagactcg      3900
     aggaaacttc cctcccacca agggaagcat tctatagtaa tttaacggaa agggaatgct      3960
     ctcaggaaga ttatgatcaa gctcttaaag tttggtcgca tttctcttgt tccactctta      4020
     aagattattt agaattatat ttaaaaacag atgtatttct tttaaccgac atttttgaaa      4080
     acttccgaaa aatttgtatg caaatttatt cacttgaccc agctcagtat tttacgacac      4140
     caggtctatc ttgggaggca atgttgaaat ctacaaatat tcaacttgaa ttgctgacag      4200
     atatagatat gtatagattt attcaaagta gcattcgagg tggtttagtt caatgttgtc      4260
     atagatatac aaaagcaaat aacaaatatt tgtcagatta tgattcctcg aaggagtctt      4320
     catttttaat gtatgtagat gcgaataact tgtatggttg ggcaatgtca caacctttac      4380
     catataaaga ttttaagtgg atgtctacca cagacataga caattttgat attaataata      4440
     ttccaatcga tagcaaatac ggttattttt tggaagtgga cttaatatat ccataccgtt      4500
     tacatgatct tcataatgat cttccatttt gtccgtcaaa ttgtctggcc tcaaaagagg      4560
     ataaggtaaa aaaattaatt gctgacctgg gaaataagaa aaattatgta atacattatc      4620
     ggaatttgca acaatgtata cagaatgggt tagtattgaa aaagatccat agaggtgttc      4680
     agtttttaca aaagccttgg ttaaagaatt acattgatct aaacacttta catagacaaa      4740
     atgcaaaaaa taaatttgaa aaagattttt ttaaattaat gaataattct gtttacggaa      4800
     aaacaatgga agatcccgag cgcagggtcg atattaagct tattagttca tgggaagctc      4860
     cggataactc caagactgga cgaaaagcac attgtgccaa aactttaatt tcaaaatcca      4920
     attttcatag tgcaactaaa attaatgata atttctatgc aattcaaatg aaaagattgt      4980
     ccgttctatt taataagcca atgtatttag gatttgcagt attagactta tcgaaatgga      5040
     aaatgtacga ttttcactat caatatatga agccaaagtt tcaggaaaag ttactcttaa      5100
     attatatgga tactgattca tttatctata caataaaaac tgaagatttt tataaagata      5160
     ttcgtaatga tcttgaagca aaatttgata catcggacta ttcagatgaa agaattaatc      5220
     tatataactt taaaagagtt aacaaaaaaa gtttagggtt ttttaaagat gagcttaacg      5280
     gtaaactcat gacagaattt gtaggtctgt gctcaaaggt ttattgttat agaatagatc      5340
     aagttaaatc ttcacataat aaagcaaagg gagtgagttc acgaaatctt acaatcgaag      5400
     actataaaaa cgttttatta actggggcct cactatatgg taatagaaca atgtttagat      5460
     caaaagcaca taaaataact acagttaaag taaataaaaa aattctttgt ggcaaagata      5520
     acaaaagaaa acgtaatgtt aatgaaacac aatttttaga gttaagtaat gaagaccatg      5580
     gtacgacatc aataaaacat cagagattaa ttgaaaaaga tattttagaa aatgttgaat      5640
     ggctagaatc aaattcattt tgcttgggtg agatgataca aaataattat gtgaacgatg      5700
     gagaatcatt agatagcctt aaatttcaaa aggaacatat tgaaaaagaa ctattttata      5760
     aatcagttga attggagatg ttttattatg atcgagactt tggaaaatat aaatgaaaat      5820
     gattttgagt ttgtaaaaag tatttttatt atatttaatt ttaatttaaa acattgtaca      5880
     aaaatattaa tattaaactt aatataagat aagataatat gtaaataaaa attaattaaa      5940
     taaatgattt attatactac aaaatgtctt ccttgtttat ccagctagtc tttgaaaacc      6000
     caagccactt aaccaaaact ttatttcctt ttcgccttac aattttttca actaggtatg      6060
     tgtggggaaa tcgtgttttt ttcagttctt ctttatagaa tccgccctga atcgggctac      6120
     catctaaatc ttcaagtaag tatgttttag ggtatgtatt cttcaccttt ctaattttaa      6180
     agatttcagt tgtatagttc ggtgtatacc ctttctcaaa gacatgtttg tatttactga      6240
     tacgaacgtg gtccccctta cggaatttac ttgcaacaaa tattttcagg tgattatacg      6300
     atgtttgtaa tatttgtttt tcattggaag aattgacttt acttggactc atttttattg      6360
     ttctatgctc tctattatta tatttattaa ttaattgttt atacatatct atccacttat      6420
     attttccatt gaaactaaac tcacgccaca ttaactcttt aagagttcta ttgaaacgtt      6480
     caactattga tgcttttaga gtactgaagg ttgaataatg atttatccta taacttttca      6540
     ttaatacctt aaatttggaa ttaaagaatt cagtgccatc atcagtttgc aggtttcttg      6600
     gtgttccatg acccgattta aatattctct ccatggcttg ggaaacatca tttgcatttt      6660
     ttgattttaa tgcctcaccc caagcatatt tcgaaaatgt gtctataaca gtcaacaagt      6720
     atcggtaccc atcattagat tttgaaaagg ctcccatttc aaccaaatct gcttgccaca      6780
     gatcgtttat accccttgta atcactcgtc ttcgttgaaa gttttttcga gatggtccgt      6840
     gcaactcatt tacgatttct cgcttaatca tattcttcta ataggctgaa aagcgacacc      6900
     ttctaactca attgtggttt ttttcggtaa tgatatcggt tttgttacat atttaaatat      6960
     atagtcctca atggttttaa tcttttccag aattttggca aaaatttggt cagcgctgtc      7020
     tgccctctta ctattcaatt caattttatt ttctaagctt gaaatttttg tgagtcgacg      7080
     attaacattt tgagttataa tttttcttaa atcttctccc aactttccga ggatctcatc      7140
     agtatattgt ttcgttgcta gatcattgtt gtctaaaggc ttagatccgt ttttgatacg      7200
     tttattttga gcatttagat taccgtcctc atcgatgaat aatccctcag tagaattaac      7260
     acgtcttttc aaattttctg atcgttcctt atcaacagaa aaatgtccaa acttgtcgac      7320
     agacatgatg tttataaatg taaaacatat ttgtccttcc tatttatact cattaatata      7380
     taatcctttc ttcacgcaat tcctctaata ttgaaaaaat ttcgttattg tggctggtgt      7440
     tacccgctcc ttttgatgct actaaaattt ccaatcgttc gactaactca tttacatcat      7500
     tccaatatac atagtttgga tttgatttct gaagagtcat gtaaccaaag cctgtttttg      7560
     agcgaagtgg agtagacgtt gtaggactga aatctttgtc tatcaacttc ttaataatat      7620
     ggctatattt gtatgctcgt gtacccttga ttctgttatt aggtttaaag cctactctat      7680
     gtatattcgt ttctaaaata atttttttat acattttcaa gtcttgatca tcatagtttt      7740
     caggtttact aagaaaaatt agagagtaca gaccaggagt cagatcacaa ctcattccac      7800
     tagaaaatgt tattttatta tttttaattt ttaattcttt atctcccaaa gttaatgaat      7860
     tgtttgcgct ttttttaggt ccataaccct tatccaacac atttcctctg gtcaaattac      7920
     tgatattaaa atcataatta taactagtgt tattatcttc tagctctgca tccacaccca      7980
     tatcggcctc tcctgtatac attggtaaag gtgttgtccc ttcttcttca cttttccgct      8040
     cctttttctc ttcttctata tcttcctcta tgttcgtttg tgaaaagaat tgattatagg      8100
     aatcactatc atcgaaagac cttggtggag ttatgtttcg attagactgc ggatctttct      8160
     cattagttgt aaagtagaaa tcgtcaagct ctctctcatc atcatcgtat ttcttaattt      8220
     gcttcatttc acgctttact tttatactat cttttacatt agaaatcttt tgttttttat      8280
     tttccttaac aagttcatgt aagggttcag taataggctt aaaagtttcc tccaattgta      8340
     aattcgtatg atttttgact tgtttgagat catcgaattt tcgcttcaaa gcaaatctag      8400
     ctttggttaa ctgtgacaaa atattcattg tagtatattg ttcaaacttt ataggtgaaa      8460
     gatttaaaat ttccgaaatt catgtagtca ctcctcagtt actaaacaaa tactgtttag      8520
     ggaacgccaa gatctgtaat atttatatac catttccgaa taaaaaaaaa aaaagattcg      8580
     atacattttc ttcattatat tttaaaaagt gtatttattg ttatattctt aaaatctcaa      8640
     tctttttaat gattactgac ttatttctaa atacaaattg tcattacttt tataaatatt      8700
     aaattttcca tcaaccattt cattgatgat atcatcttga agagaggtgt acctttccgg      8760
     catgtacaga atgtgctcct ccaactcgag agcaatagat tctccaacct ttgttgtttt      8820
     gcgctccgcc ttgaggatcg ggaatcttac attttcaggc atccttgtct tcgatagcag      8880
     tgtcttttta ttaaatttat tgaactcttt aactacaatg ttcatctggt tttcctgatt      8940
     catgatggtt gttgagtttt ttggacttga tacagttgtt ccacgttgtt tttagctgta      9000
     ttttgatgtt tactacctgt ttagcagttg ttcagtactt gtttcgtagt tgcttactac      9060
     ttgttttagc tggttaatag ctgttattag atggttatta tctgtttagt agctgttaac      9120
     tagttgttta ctagttgtta taagctggtc accaactgtt ttgagctgtt atgagcagtt      9180
     ataggctttt ttgttaagaa tgatcaaaaa ttcttgtcct ctagatgacg ttcgatgtga      9240
     agtagaaact tagactgtga atttgaacgc gtgcaggtcc actttttata ccatacagag      9300
     ttcacacata cacgtaccca tacattgatt ttcaaccccc caaatgtaaa ttaaccattt      9360
     aaatataccg gttttgactc cacattttct acgaaagaaa gtagaaaagc gaggcacagg      9420
     tgtccacagt tgtatgtatc aaagtcttga actctatcgt agttgtattg tattctatgt      9480
     cccaagtatt tcacaacttc tctaggtggc tgaagatttc caaaactgtc gaaataatgt      9540
     atattatttt tatttttatt atatgcaacc caatgtgtac cacttgatcg ggaattatct      9600
     aagtttacta taccacactc cctacttttt ggtgcttctg ggagtagatc tctcataaac      9660
     acccctctaa aatgtgggat atatttccta gcaaaatgta taatgtcgat atttgatagt      9720
     ggtctattgg gtagcagaga aattagtttt ttcgcttctt aattcctttc cccttactat      9780
     agggcttaag aaagaaacca taaccctttc tatagggctt gagatataat ccttctccta      9840
     cagcaacact ttcaattttc ctattgtgac gttttttctc ctccatatct tccttagcca      9900
     ttctcgcatt gttaattgtt tttgcaattg ctgcactacc acttgctaaa ctaccaagag      9960
     cgctgagggc tgtcaagatc ggcacgattg gtagaaaacc tccaattttg ggtacattaa     10020
     ttacacgagg tactttaaca tttttcttag aacccattga ttgatgaatt gatttacgtg     10080
     caactttaat tgcactcata atgtctaatg gtttttgttt ttttaatgtc ttagtagcag     10140
     cattaattac agtcgaaagg tttgtcttct tcattttatt cttcaatatc tttttccttc     10200
     ctttcttttc cgttttattc aatcccatac caaatttttt cttggctttc attatatttg     10260
     taacaaagta tgctgctgct ctttcaccaa gactgctatc tggtgccttg acacgcgacc     10320
     aggctttgtc aattaatatg gagtctgccc tatgtcgttc actcaatgcc ttgttttgag     10380
     aatatgcgat atcgtgctct ttgcaagctt catccaatgg gtttattcct tgatcaccac     10440
     gttccaaccg tttctgtaac tttgtacccg gtccacaaaa attatatccc ggaatatggg     10500
     cttcaaacgg taatgtatta attagcttat cgacaagacc accaccgtgt ttacaattaa     10560
     aaatacgact gatgcgatta taaaaacgtt tccccatttt attgatgttt aatcatcaaa     10620
     gatttctcat tgaatgaggt acattaggtt aaaagatgcg tttaataagt cagaaacaaa     10680
     aaattgtagt tagaaatatt aacgatgaaa acgagaaaaa tctaccgcca cgacatagtg     10740
     ctctcttacc gaacacaata agggctctaa ttgttgggcc ttcgaattgt ggtaaaacta     10800
     atattatgtt aagtctaata gagagtccta atggattaaa attcgaaaat gtttatatat     10860
     tttcaaaaag tttatatcaa cctaaatatg agtacttgga gaaattaatc aaaccgatta     10920
     aaggaatggg atatcataca ttctcccata atgagggtgt actagacccc agtgaagcta     10980
     aaaacaattc cattatgata ttcgatgacg tagcttgtga aaaacaagat aacataagat     11040
     cttatttttg tatgggtcga cataaaaata tcgactcttt ttatttatgt caaacgtata     11100
     gtcatatacc taaacatctg attcgtgaca atgccaactt tattataatg tttaagcaag     11160
     atgatttaaa tatgcggcat atatatcggg accatattaa cactgatatg aattatgaaa     11220
     catttgtgaa aatttgtcaa aaatgttggg aggacaagca cggattccta ttaattagca     11280
     aggataacga aatggataac ggaagataca gaaaaggatt tgatcaattt attatgattt     11340
     aaggagtaat ttcaatataa agcttggtta gatacttaca atcccacagt ttatcaagag     11400
     atttcaatat gtctagatca cttgcattat ccttgaatgg aaatagttcc attataaata     11460
     caaacttttt tccacctatc gaattgaatg gtcgatatga gtgcgctctt atcgatttta     11520
     atatgtataa ttcgattcca aatattgatg aaaaaaataa cctcttccac atcggtgaca     11580
     aggttattac aattccaact ggatcatatg aattgaatga tatcaccgat ttcatttaca     11640
     ataaactaaa agactataac ctggaaaata catttaaaat tcaaagtaat aataatacac     11700
     ttcaagttga aataactacc atgcgagagt cagtttactt taataaggaa agatcggttg     11760
     gacagctgtt tggtttccat caaaaagtac tagaaccaca tcctacaaaa acctatcgat     11820
     cagatcagac cgtgaacata ttaaaaatta atacaattcg tttggaatgt aatataatca     11880
     gcggttcata tgtagataat acaccgaatc atacattaca tgagtttggc attaatgttc     11940
     cgcctgggta taaaatgaca gtgacaccac ataacctaat ttatttacca atcaactgtg     12000
     acgaaataag cacactatct atacgcatag ttgatcaaaa cggtgatttg gtgaatttac     12060
     gtggtgaaaa cgtttcgatt cgcatgcaca ttcggttaat agaatgatta tttataataa     12120
     aagacgtagc ttaagtcctc agccaagcat tactaattgt aaagctatag aaagaggatc     12180
     aaaagtaaaa agaagctcac ttactttgaa aaataaacta tttttaaagt cgttaggctt     12240
     gaagcttcga gtataatata aaaggtggaa aggaaaacaa tgaacgaaat tttaaatgtt     12300
     cgagaaaagg tttactcaga tgagagtatt tcgaagaaag agtttcatac ttattcatcg     12360
     tataatcaaa catttaagcc aaacgatgaa attcgaatta ctattcaaaa tcaagacttg     12420
     tacgtgcttc ctcacgaaag ttaccttaat tttcaaggaa ttattagaaa agattcaccg     12480
     aatggaccta caactgaaaa tgttaccact ttttttaaaa ataattgtat ggcttacttt     12540
     ttggatgaaa ttaagtacga aataaatgga tgtgagattg ataaaacacg atttgtcggt     12600
     atgactacaa ccctaaaaaa ttatatatct ctggataatc ttcaaagtca aaatctatta     12660
     aattccggat ggagcagtgg ggacgaaata tctacgggac cccactttaa cttttctgta     12720
     ccattaaaaa atttattggg atttgctgag gattataaaa aagttttgtt aaattgtaaa     12780
     cacgaactag tgttgatgct aactaagaat cttggtgatg tgtttgaaca aaccagaaat     12840
     gaacaaactt ttaagttgga aatgacgaat ataacctgga aaattcccca tgtaactccg     12900
     agcgattttg caaaaattaa gatgtacgat attattaaaa gtggtgtaaa cctaccaatc     12960
     gcattccgga gttgggattc atatgttaac cccaaattgg ggtatggaag tcaacacagc     13020
     tggaatgtga aattgtcggc taaccgcgaa aaaccaagat ttgctataat tggatttaca     13080
     ctaaatggag aacttatcac aaataactta tcaaacttga aagttcactt gaattcagag     13140
     tcatatccat atgataatct gaatgttgat tttagtaaga atcagtatgc tcacctatat     13200
     gaaatgtata caagatttca gtctagttac tataatcgtg aatcacaacc atttttgacc     13260
     ccaaatgaat ttaaattgaa ggcccctatt attgtggttg atctttcata tcaaaacgaa     13320
     tcagtgaaaa ctggtcctat tgatgtgaga atttcaatag aactgaagac accaagtcat     13380
     gaaaataccc aagcttactg tctcctcata catgaccgtt tagttgaata taacccatta     13440
     aacggactag tacaacgagt tgtttaacat tagaaaaatg ttgaatgata ctgtttcgat     13500
     tgatgttcaa ggtttctttg ataataataa taattttatt ttaaaggaaa ttggaattgt     13560
     attcgaaaaa gatccaaact tgaataatag tattttaata gaaccaccat atgattttac     13620
     tttgctaaat acaaaatctc gaaagactgc aatttggtta accaatacac atcacaagat     13680
     tttttggaac gatggagaga acagttttcc acaaactcga aagtatctaa ggacaattac     13740
     aagcggaaaa caaattattt gtaaaggtgt ggaaaagaaa cgatttctac agaagttttt     13800
     tgggagtcgt cagctcatta atatcgagga aatgggctgt ccgtcattaa acaggtttaa     13860
     aggaaaccgg tttccctatt gtgaaacaca ccttaagggc ggggtttgtg ctctaaacaa     13920
     tgcatacatt attttgacat tttttaaaag tagctccaaa acaataaaat aattgttata     13980
     catcatttta aagttgagac tagatgtgta aagacctaca agaaaataga attaacaaaa     14040
     tgaaatttca tgaggaaatt gaccaattta ttgaacaatt taaaggagag ataactggtc     14100
     agcattttca atatcttcta aacacaaaat ctatgttcat gaatcgaggt ggacatgatc     14160
     tcaaaactac gaattatggt gaacacttta cattttgtaa tccagaaatg acgtcggaaa     14220
     cgtgcgcctg cttcttctat gcaaatcgcc ggaatcaaag cagaaaatta atttctatgt     14280
     ataacaaaaa tgttcgcaat accaaaataa atgaataaat gtattattat gctacaaaat     14340
     aaacttctga ctttttattt cgagttaaaa ttacaggtac ggagaatgga aaatatttcc     14400
     ttgactgaga tatgtcggct acttgcgagc tgttgcgcgg tcgtgatttc aacccctatt     14460
     atgggaacgt cgtatgagct cgtatgaggt cgttggcgtg aggcccatga tcttgtcaat     14520
     gagcgtgcgc cttctgggtt gtgcatgtgt cccttttatt gcggtcaggt aattgacagg     14580
     tgcgcatgtt cgggtagctc ttgcttgaat cccttttatg acatgtttat gacccatttg     14640
     tggaaaggag agaatcttag acaatttacc agttaaacgt tctggggcgg aaacaaaaat     14700
     gtgtatttga aaatattcca catctgagaa tcattaactt gtgagattta ttttattggg     14760
     gttcttttga tttctaaatt agttttacaa tcataggaaa cattattccc caacatgatc     14820
     ggacatgttc ctctaagata accatctttg aatactttgg gtgtgcgacc tttcacacgt     14880
     gcacagcaac acctgtgata atgaggcaaa agggtacgtg atcacacctt tccccaacat     14940
     gatcggatat gttcctctaa gataacaacc tttggatact atggttgtgc gacctttctc     15000
     acgtgcacct ttctcacctg actattaatt gcacataatg aggggaagga tacatgatca     15060
     atattgtcac atggggatgt gggggcgatg gggggcaatt aagtatactc tttatagaca     15120
     tgatcgtgac atttttatga cttcaaagcc cattaaaatc agttaattta ttggattatg     15180
     ctaattgtcc cagaacccgc atacgttaat gaggggggag ggggggcggg ggccattaat     15240
     atgctaattg tcccagaacc cgtctttccc tactact                              15277
//
ID   Polinton-1_DTa repbase;    DNA;    INV; 18487 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.11, Created)
DT   15-JUL-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Polinton transposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-18487
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6256-6256 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 18487 BP; 5877 A; 3070 C; 3118 G; 6418 T; 4 other;
     agtagtatgw aaatgggggt tctggatacg aaggctggat acaaaagtgg agggggaggt        60
     aattaattat gctaattagg gtaataaatc aggacaatgt gacaggtgtg gggggataat       120
     taaagttaat gggtgcgtga cgagtgatcg ttaattaggg tccacaatag ttatatccag       180
     cttttgtatg tagggtttgt attcaggaat caggaatccc gaaattcggt ccagaaatcg       240
     ggggagatat tactggggtg tgacgggtga tcgtaaatta gggtgataag ttgcttatat       300
     ctaggaattg tattcaggaa ttcgctcccc cgaatttcgt ttaagaaatc gggactctta       360
     ttaagcggga agaagttact ggggtgtgac gggtgatcgt aaattagggt ccacaatagt       420
     tatatccagc ttttgtatct aggaaatggg gtgaaaagag gggaggcatt ctgcttaagt       480
     ggttgacgag taggttgacg ggatcgaacg tgggagaagt tagaaaaata gggtgaaacg       540
     aggggaggga atctagttaa gcgggtgaga agttactggg gtgtgtcagg tgatcatagc       600
     gatatatttg ggttatccta gttaatgggg gagaaattac tggggtgtgc cgggtgtcct       660
     ttgcttagat taagaaagtg tggtgctcac acgggtacgt gttagaatgt cacgggctgt       720
     tgtcacgtcc aaaagaaaca gctgaaagca accacccttg aaaagggatc cctttgcttg       780
     ccactgagaa acaaactccc aaagaaacag ctgaaagcaa gcacccttga aaagggatcc       840
     ctttgcttgc cactgagaaa caaactccca ccccaataac aaaaagaaga tgttaatttg       900
     aattcaagta tatttttatt tttttaactt tttgagctga aagaaatagc tgaaaaaaaa       960
     tcacccatcc cccaaacaaa agaagatgtt aatttgaatt caagtatatt tttatttttt      1020
     aactttttga gctgaaagaa atagctgaaa aaaaatcacc catcccccaa acaaaagaat      1080
     atgttaattt taatttcaaa tatattttta ttgttttatt tattttttat ttgtaaattt      1140
     aaggttaaga tttttgtatt tgttaattaa agcaatagct ttaattctaa tgtatggtgc      1200
     ctggtgacat tgacatgtat ccgggccctc tcttacgtca tcgtcggccc agggacatgt      1260
     tagcatatgc acaccatacc tagattctct ctcaccgact cgatccatct gttgtagctt      1320
     ggagaagtcc atctccaggg actcccgatg atcctcaaaa atgaagtcac caaattcttc      1380
     gaggaaattg gtgatttcat cacacacgtg gttgttattc attctgctgc tgtttcttgt      1440
     tgtttcttga tgttgttggc gctgtttctt gttgtttctt gatgttgttg gcgctgtttc      1500
     ttgttgtttc ttgatgttgt tggcgctgtt tgtctgttga tgatgttgtt gtttgttgat      1560
     ttttggttgt tgattagttg tttgttgtat agttgatttt tggttgttgt atagttgttt      1620
     ttgttggttt ggtttgttga tttttggttg tagttttgtt gttattccaa acttatgttg      1680
     ctgctgctga tattattaat ccagacttgt aattcgaact gaaggttctt cccagtaact      1740
     tcttactttt atcccctctt catatgggga gcaaaaattt tccaccacca tcccttccct      1800
     cgcgatcatc cctttgagaa aattagttag acaaatgcaa atgtgactag aaaccgagta      1860
     gtcaacaacc tggttgctag gacacggttc actttcaccc ctccctcgcc atcaaatatt      1920
     cgatggaatc aaccaatgaa aataatgcaa gtctaatttc ttatattaaa tttaaggaaa      1980
     atattttcat caaccaatca attcgttgca actctaattt cctatattaa atttaaggaa      2040
     aatattttca tttaccaatc aaaactttga attttttaat tttcaaacta aagtttaagt      2100
     tcatactaat aatctatcct caaagttata tttaagctag aattttacca aattcagatc      2160
     agtgttttca aatttcttga agtgacctac tctttttact agtttcgaaa aacagtaaag      2220
     tgatcttatc aacgtgtgta cctcaattga aaagtggctt tgtgagaaca attaaattaa      2280
     aattacaaat taactacatt acaagtgact ttgtgaaaag aaaataaaaa tttaaaacaa      2340
     tctacaaatt aactacatta caagtgactt tgtgaaaaga aaataaaaat ttaaaacaat      2400
     ctacaaatta attacaattg taattctttc caaaataaaa attaaaatga ataaccaaac      2460
     ccaaaaatat tgtgagtcat gccgtcgttt catcccggtg ggagttcaat ggaatcacca      2520
     tgcacgaacc gcgaaccaca agatgaacgc tatggtacct ttggatggaa gaatcaaaat      2580
     gatttcggat ggattcaagg gtcgaatcct tcattatatg tttgttaatg aaggagagga      2640
     attaagatac ccggaagagt tcctcttcga agcaggagag gctttaaaat cgcatttatt      2700
     taatgtgctt caaagctaca tgtccggtaa agttaatttt gagctttttg cggaatatat      2760
     gctcgtgaaa gatgacgatt taaaaacgga gactaaacaa ttccaaagca aaatggaagt      2820
     tgttacaaac cactcggatt tagaccgcat attcaccaat cactcagacc atctgaaaat      2880
     aaaaatggaa gagtttcagg aaagggatag cgggtggacc ctactccgca taattcgatt      2940
     ggaaatgaat ttcaatcaat ttaaaccgct ttctggttcc tcatttatcc caacaccacc      3000
     caagcttttt tcgaaaaaag caataattaa tgtccaaaat aagaatgact catactgttt      3060
     taaatggact ttgatttcgg cacttacaaa ggtagcaagt aaccctagta tatgctacac      3120
     atataaagtt gatataaggg ccgaaagatt tgttttaaca tctggaataa atttggactt      3180
     cagtgggtta acattcccgc tcaaaataaa ggacatagac attttcattc aaaaaaacgt      3240
     tacattgagt attaacgttt ttggatatga tgaggaaagt gaaactataa ttggacctct      3300
     ttatcaatct ggagttgaaa agccgacgca cataaatata cttttcctgg aaggaaacgg      3360
     attcggtcac tacacatgga taaaaaatat ttcaaagtat gaattttact cgttatagac      3420
     ctacttttac ttattatgtt acattacttg ttttattttt cttttattta acagactaat      3480
     gactgcacaa aaaagatcta cataagggac ggacatggtt ttgcaatacc tgcttaaatt      3540
     tttcatcaac tgcaagtcac gcacttcgcc acaaggagct ttgcagtgga aaggttgtca      3600
     ctctcccaaa cccatataaa tcgacattga agtatacggc actgcgtcat caactaaaag      3660
     ttccgttcgc agtgtatgca gatttcgagt gtatacttcg acgtaaaaat attgatgtaa      3720
     gtcctaaact gtttaatgta aatgaacatg taccaatttc atatgcttac tttataaagt      3780
     gtgcatatga ttctagctta gataaatttg taatggaaac gggaggtaat tcagccataa      3840
     attttgtcaa ttcccttgta aataacttaa aaactattca tacaaattat ttgagtaaaa      3900
     ttgttcccat agtaatgaat ccagaggacg aatatgattt tgagtttacc ctcaattgtc      3960
     atatttgtga gaaggcttta gcggatgata gggttcgaga tcattgtcat tatacaggta      4020
     gatacagggg tgcagctcat tcgaaatgta atttagaatt gaaaacgtct aattttatcc      4080
     cagttttctt ccacaatttc tccaagtatg attgtcactt gtttatcaaa gaattaacat      4140
     taatacctgg agaaattaaa gttattccca taaacaagga gcacttcatt tcagtaatga      4200
     aaaaaattga aaatgaatgt ggaaacagtt ttgagataag gtttctagac acatttagat      4260
     ttatgtcatc tagtctagat gccttagcgt ccaatttaga agatgatcaa cttaaatcag      4320
     taagatcaca ttttaattgt gaaaatgaat ttaggcttat gcggaagaag ggtgtattcc      4380
     catatgaata tcttgattca gagcatagac tagaggaaac tagtttacca tcaagagacc      4440
     aattttataa tcagtttact gaaaagcatt gttctcaaga ggaatatagt catgctgtta      4500
     aagtttggac acaattttcc tgtaaatctc taaaggacta tctagagatt tatttaaaaa      4560
     ctgatgtatt attattaact gacgtttttg aaaatttccg tttaatttgc atgaaaattt      4620
     attctcttga cccagctcat ttttatacaa caccaggttt atcttggcag gcaatgctga      4680
     aaaccactca aattgagtta cagttaataa ctgatattga tatgtataaa tttatacaaa      4740
     gtggaattcg gggtggtttg gtacaatgct gtcacagata tagtaaagca aataataaat      4800
     atttaagtga ttatgatgct agtaaagagt catcattttt aatgtattta gatgcaaata      4860
     atttgtatgg ttgggcaatg tctcaacctt taccttacca agggtttaag tggttgtctc      4920
     ccatagacat agaaaatttg gtagtagaaa atattccaag cgatggacat tatggttata      4980
     ttttagaagt ggatttggac tatccataca gtatccatga tttacatagt gatttaccgt      5040
     tttgttcatc aacaaagtta gccactaata gcgaaaaagt aaaaaaatta attgccgacc      5100
     tcggaaataa aaaaaattat atcattcatt ataaaaattt acagcaatgt ttgcttaatg      5160
     ggttgcagct aataaaaatt catagaggga tacgttttga gcaaaaacct tggctcaaaa      5220
     cgtatataga ccttaacacc caatatcgtc aaaaagctaa aaattcattt gaaaaagatt      5280
     tttttaaatt attaaataat gcagtctacg gtaaaaccct agaaaatatc gagaatcgcg      5340
     ttgacattaa aatagtttgt gattgggatc ctccacagaa taataataat aaaagtggtc      5400
     gtaaaaaatt atgtgcacga gcattaattt ccaaatttaa ttttcaaagt gctacaaaac      5460
     tagagaatga tttttataca attcaaatga gaagaatgtc atatgtatac gataaaccca      5520
     tgtatcttgg gtttacagta ttagagttat caaagtggaa catgtataat ttccattatc      5580
     agtatatgaa accgaaattt caagataata taagattaaa ttacatggat acagattcct      5640
     tcatctatac aattaaaact gatgattttt atagagatat tcggaatgat atagaattca      5700
     aatttgatac atctggttat tccgaagaaa gagccaactt atataatttt aaaatatgca      5760
     ataaagcggt attaggtgtt tttaaagatg agcttcatgg tagaccaatg tcagagtttg      5820
     ttggtctccg tcctaaggtt tattgttata aaattgattc tatggacaaa tcgtttatga      5880
     aatctaaggg agtaacgaga acagcactag agtatctaga tattgaaaaa tataaaaagg      5940
     ttcttttcac tgaaaatcga atgtatggcg gcatgtcagt ttttagatct aaaaatcata      6000
     ccataaatac ttacaaaatg acaaaaataa ttctcgatgg taatgatacg aagagaaaag      6060
     ttgagggtga taaaatgtct acactccctt atcatcataa gggtttaata gaaagggaac      6120
     tcatatcaaa tgttcaaatc cttgagggag agtcacttgt tttggggaga caggtagatg      6180
     aaatagaaag tcttgaattc cagactgagg aacaaaaaac tttactcaag cgtctaaaaa      6240
     cagaaattga aaatgttgaa catgatttac tttacaagtc gcttgaactt gaaatgtttt      6300
     ataatgaatt gccccccgat cccaaaaaac agaaacaatt ttagatttaa caatgcaaaa      6360
     tatttattta attagtaagt ttgataaaag gtgttgaaca ataaaaatta acaaaatata      6420
     tataaatctt aaaaggtgtt gaacaataaa aattaacaaa atatatataa atcttaagca      6480
     atatatatat ataaatgttt atattttgtt agtataacat taagttgaac gaataacaaa      6540
     tacatttcaa taaattgagt attaaatata aaatatttgg gtgtgttttt aaattttttt      6600
     ttttttggaa attttttata aattgggtga gtatatttta tttgattggt tttgtacccg      6660
     ttgcctatat agataattcc acagttctaa ttcatgtggg ttcattttag cttcaggttc      6720
     agaatccctg tcttgaacag gttcatcttc ttcttcagct gatttttctt cctcgttttt      6780
     ttcccttatc tgttttagat aataacccaa ctctacttgt tcaggagtaa tatcattatt      6840
     ttcattactc tcatcgctat tgcttaagtt aatgtttata ttttggtgat aaagttgtgt      6900
     gatgtcatca tcagttaaat taaaactaga aatattatta gaaattgaat ttactgaaac      6960
     tacgttagat cctaaaaggt gaacatattc aactgaaatg agaaaaagaa aaaaaaaaaa      7020
     acgaattaat gaaatgaaat aatatatact aaagtaaatt aacttgcctt ttgttttgtt      7080
     taatatatta tttccttgag gaatttttat atccttctga aataaataag taatatgtta      7140
     tccctaattc atataaaagt tgttgcggtt caacaactcg ctacactcta atagacataa      7200
     ttttccccca tcagagtcta taccactcaa gtctagttcc tcaattgtta taacctctct      7260
     tttacttatc ttgggtggag gtggtaaatc tattgttttt ggtagaagtg gatagtaaaa      7320
     aagttcttca tcaatttcta cacagtttat ttgaatctta tacatatcta gatgagaatg      7380
     tttttttaac ctttttgaaa cgtaatggca ctggattctt aaagtgaaaa ggtccttata      7440
     accgagttta taatatctat cgaaacctct gtttcctgtt acaatagttc cgccctctct      7500
     attttccctt tcaagcaagt ctgatttaaa cttctctaac aattcctttt taagaaaaga      7560
     atattttttt tctacactac gcttctctgt tttatttaaa atttttgact cttcacttac      7620
     attatcatta ttaccatctt cttcatttag tggcgtaaat gattgtttgg agggtgacga      7680
     caaatcatcg tactcatcat agatttggaa attagctggt gggggtgttg atgatgatga      7740
     ttcttctgtt gcttctgttg atgatgatgc ttctgttgat gatgcttctg ttgttgttga      7800
     tgatgatgat gcttctgttg ttgttgtttc tgttgttgtt gtttctgttg ttgttgtttc      7860
     tgttgttgtt gtttctgttg ttgttgtttc tgttgttgtt gttgttgttg tttctgaaat      7920
     taaatatcat aacaaaagtt aacaaaaatc gaaaaaggaa aaaaagtaat ttgtgattgt      7980
     tatttatatt ggtatttacc ttgtggtgct tcgtcgtctt catctttttt tagtttcctc      8040
     tcttctgtwa tatagcttgc cattgttgkt gcttctgaaa ttaaatatca taacaaagtt      8100
     aacaaaccaa aaaaaaaaaa aatttttatt gttattattg ttttgatgtt cttaccttgt      8160
     gaggttttta gtttactctc taactcatca atgttattta tattcgctag tgaactgttc      8220
     ttaaatagat acaatttcag ctgaatattc aaaacatcat tgttagggag taaaatttga      8280
     ataattgtgg tttccattgt ctcgttgtat gtcgttagat gtgaagtggg tattacaccc      8340
     atttccacta ctcctattac agaaactatt attaaaaata gtttcattat tttattatta      8400
     ttcattttca caccacacac acacacacaa ttattaataa agtttgagtt tttagctttc      8460
     actttcactt ttatatgagc aatttgagct ccaattttca ccgtcttgtc ttgcttgcga      8520
     tcgctactga aaaaatcata agcgccccag tggtatttat ttagaatttt cagtatataa      8580
     ctcttatgta aacgaataaa gggatggggc aatcattcct aaatatgctg gcgaaccagt      8640
     ccaacaaaca gaaacaatat atacaaacct tgagtaaaca ttcttatagc cctccacacg      8700
     ccctccacag aaagcagaac attcttatcg ccctccacag aaagcagaac attctatcag      8760
     tctttgcgtg tgcgtatgtg gaaactattt ttgactttgt atacgtaggg tgcggccttt      8820
     cgatgcgggc gattgtgtct ggaaactatt tttgatgatg tgtacgtaca tgagcatgcg      8880
     agtctgaaca taattataga aaccacttgt aatggatgat cttcgaagtc tttgcgtgtg      8940
     cgtatgtgga aactattttg actttgtata cgtagggtgg tgggggattt tggctggaga      9000
     ctatttttga acttgtacat aagctgttac atgagcatgc cggtctgaac atatttattt      9060
     ttctgttgct gagttgatta gtatatggag tatatattct tttattttca wtgcgaataa      9120
     gagttgctct ataaaatatt atctttagat tcccagctat catatttttt tgaaaacccc      9180
     aaccaacgta cacggacttt attcccgtct ctctttatta ttttttccac taaatatttg      9240
     tctgggaaac gagttttttt cagttcttct ttgtaaaatc caccttgtat tggagtacct      9300
     tcaaagtctt ccaacaagta tgtggtaggg tatgtgtttt tcacacttgt tattttaaaa      9360
     atttctgtag tccaattcgg tgtatacccc ttttcaaaca catgtttata tttactgatg      9420
     cgtacataat ctccattacg caatttcccc acactaaaca ttttgagatg attgtaggct      9480
     gttttcaaaa tgtgtttttc attggaagaa ttgacgtcaa ttggggcgac cttaattgtt      9540
     ctatgtggtc ttttgttgta tatatcaatt aattttttat acatatcaac ccacttgtat      9600
     gttccgctaa aactaaattc acgccacata agttccttca aacttctgtt gaagcgttcc      9660
     acaattgaag cttttacaat tgaataggta gaataatggt ttattccata ttgtttcatt      9720
     aacgcgttaa attgtttgtt aaaaaattca gttccatcat ccgtttgtaa attttttggt      9780
     gttccacgtc cagatttgaa aattttttcc attgccattg agacatcttt agcgcttttt      9840
     gattttaatg cttctcccca ggcatatttg ctaaaacaat ccacaacagt caaaatataa      9900
     aaatatcctc cgttaagctt tgaatacttt cccatttcca ctaaatctgc ttgccagaga      9960
     tcatttatac cctttgtcac tacccttcga cgtttaaaat tacgtcgaca cggagcatga     10020
     atttctttaa caatacccaa tttatcactc atattttttg gtactagaac tttcttacta     10080
     ttggagttgc agtaccttct atttcaactg tctgtgattt taaaactgat ttcggttgag     10140
     taacatattt ataaacatag ctctcaatac tattaatctt tgttaacata ttggatagga     10200
     ttttatcaac attatcaacc ctcccattat taacttgaac taaattttcc aaagaagtta     10260
     ttttagaaag tcttcgatta agggatgtat ttattttcgt attaaggtct ttctttaacg     10320
     tctccaagtt ttcatcgaca tattttttcg tcgttgcatc cgaataatct attgggttcc     10380
     cacaattttt aattcgtttc tgttgggtat tcaggttttc gtcgccatca atgtacaacc     10440
     ccacaacagt tttaatatcc ctttttaaaa tatctgtgtg ctctttttcg tctgaaaagt     10500
     gaccaaactt gtcgacagac attttgttta taaggtaatt taaagtttgt gaaccttatt     10560
     tattcaatta atatataatt ttagcctctc gcagttcttc tattatagac atgatctcgt     10620
     tattgtgatt agtgttgcca gcggcctttg aagctattaa aagctgcaat ctttcaacta     10680
     attcattgac gtcatcccaa taaatataat tgggttttgc tctttgtagg gacatgtatc     10740
     caaatccctt tttatttgat tttttttgtt ttgattgaat tggggtggat atagctgaag     10800
     gatgtatatt ttcattgctc atgaactttt taataatgtt tgtatacttg tatcctctag     10860
     ttccttttat tcgcttattt ggatcaaaat ctattctatg tgcacttgtc tcagtaatga     10920
     tatctttata atttttcaag tctgtggcac tgaattgtgt aggtttatta tgaacaatca     10980
     gagaataaag cccaggagtc aaatcccacg tgcttccact tgataattga attttattat     11040
     gacttatatg taattcacta ttccccaaat ttaaggattt gggggttgat gaactttttc     11100
     taggtccata agcattgtcc agaactttat ttctcgatag actgctaata ttaaaatcat     11160
     agtctgcatg aattagactg ctagcatctg cttctttttc tagctgtgtt tctaaaggtg     11220
     tttctagcgg tgtttccggc tctgatccca attcaatatg tgactgtgaa aaaaatttat     11280
     catctgagtc actagtaaca tcatcattat aaatttttgt ttcttcattt cggctattat     11340
     tatcatcata atcgtaatca tgatcatcat cgtcatcata ccttaattga tgtttcttaa     11400
     gctttttact gggggtttca tttttaaata tttcactttt ttgctttaga accgttgatt     11460
     tatcttcgtt tgtattcata aactttcgtt ttttattttc actaactagt tcgtttaagg     11520
     gatctgttat tggcttaaaa gtttcttcca actcgtaagc attttgtgat ttaaaatgtt     11580
     ttagatcatt aaactttttc tttaatatat ttctcgtttt agtaagctga cttaaaataa     11640
     attgactcat tttgggtact ttcaaaactt tcaccaccgt cagcacaaaa gatgtaatac     11700
     cagtttatga actatacttt acagggttac atttcatact aatgaaagtt ataaaatata     11760
     tatattattt atatgatttt atttttggct gaaaaagaat cattttacat tgtttaaatt     11820
     tcctcttcaa ataaaagaat ttaatgtggg tgtgtgtgtg tgtgcatgtt ttattgaata     11880
     taataaatga ttatgtacaa atgttataaa tattacaaag tgataagtgg attaaacaat     11940
     tgtatttaac tctagttgca gggaatcatt gcttcttttt ataactcgat attccttgtc     12000
     cttgagcaac ttcagatgac catctttcat agtgttatat ctctttggta gatatagaat     12060
     atatttatcc agttccaagg caatggagtc cccataaaca gttttcttcc tctgcgcatt     12120
     gataattggg tagctgacgt ttatacccat cttgttttgt gatagcaagg gcttcaatgc     12180
     tcgcgtgttg aactccttta aaaccccgcc tcgaagaatt tcctcctcca taatggtgtc     12240
     cagctcactt tctgatggaa ttggttgatt catcatgttg ttgttggttt gaagtttgtc     12300
     ctcgaagaag gtggtttaaa tgagaagcaa gctgatcgac ttgacaagtt aatgttaaag     12360
     ttctgactgt aaagactaaa cgatttccga gctcatttta taccagttct cagaccgaga     12420
     tttccatagc aacaggttgt tgtttttcca cccttgttgt tttccaccct tgatgtttaa     12480
     aagtcgttaa atcagttact ttatgcaaca ggctgttgtt tttccaccct tgttgttttc     12540
     cacccttgtt gtttaaaagt cgttaaatca gttactttat ttgaatgaaa gcaggaattc     12600
     aatgcacagg tgtccacaat tgtatgttcc aaaacgttgt acctgttcat agttatattt     12660
     gattttatcc cctaagtatt tcacaacttc ttttggtggt tgtaaatttc caaaactatc     12720
     aaaatagaat atgctgtttt tgtttttgtg gtaagctacc caatgtgtac cccttgattt     12780
     tgagtcaccc aagttaatca ctccactctc attattttta ggtgttttag ggagagagtc     12840
     tctcataaac actcccctaa aatgcggtat atttctttga gcaaattcca ttatatctat     12900
     atttgataat gctcttttgg gtagctgacc aattagtttt tttgtttctt cattctccca     12960
     ccacgactgt tgtatggttt taggtataaa ccgtaaccat ttttatgggg ttttaagtat     13020
     agaccttcac ccacggaaac ttcttccatc tttcggttgt gtcttttatt ttcttctagc     13080
     tgttgcttag caatttttgc gtttgttatt aattttgcta cactagaagt tcctgaagct     13140
     aaactaccta tagcacttaa tgcagttaag atgggtacca gtggtaaaaa accccccatt     13200
     ttgggaacat ttattattcg aggaacttta acgtttttct tagatccgat tgaattatgt     13260
     attgctttac gtgcaatttt aattgcatta accacatcca ggggttttcg ttttttcaat     13320
     tcccgactcg cttctcttac aacagatgat agtctattta ttttcatcct cctacgcttc     13380
     ctcttcttct gttttttctt atttcgcttc cgaacaccca ttccaaaatg tttctttgct     13440
     ttcataatat tagttacaaa atatgctgct gctcgctcct taagagaact atccttcgcc     13500
     tttactcgct cccaagcctt gttaattaat tcagaatctg ccttatgtcg attgcttaga     13560
     tcgttgtttt gtgaataggc aatatcgtga accttgcaag cttcatccaa ctgattaatt     13620
     ccgtgatctc cacgctgtaa tcgctctgca agctttgtac cgggtccaca atagttatat     13680
     ccaggaatgt gaaactcaat cggaagagaa tctattaact tattaataag accacttcca     13740
     cgtttacggt gtaaataatg actgatgtga ttataaaaac gtttccccat tatatattgt     13800
     ctttattcat tgaagattta tcacggaata aacatattta taataggatg cgattaataa     13860
     agcaaaaaaa taacattatt gttcgtaaca ttgagaacgt gaataatgtt aaacaaccac     13920
     cacgtcacag tgaattatta ccaaacacaa ttagagctct tgtggttggt ccatccaact     13980
     gcgggaaaac taatgtaatg ataagtctta ttgagagtcc aaatggcttg agatttgaaa     14040
     atatatacgt gttttcaaag agtctatacc aaccgaaata tgattacttg gaaaagctat     14100
     ttaaaccgat taaaggtatg ggatatcata cattctctca gaacgaaact gttttaccac     14160
     ccaccgaagc aaaaaataat tcaatcatga ttttcgacga tgtggcttgt gagaaacaag     14220
     ataatattcg atcatatttc tgtatgggtc gtcacaaaaa tattgattct ttttatttat     14280
     gtcaaacata tacacggata ccaaaacatc ttatacggga caatgcaaat gtaattatta     14340
     tgtttaaaca ggatgattta aatatgcgat acatatttcg ggatcatatc atccctgaca     14400
     tgaattatga gacatttaca aaaatttgtc aaaaatgttg ggaggataaa tatggatttt     14460
     tatttataag taaggatgac aatattgata agggacgata tagaaaagga tttgaccaat     14520
     ttattcttct ttaattttaa tataagattg gggcggggtt gtatgacacc cagttgaaca     14580
     acagatttca aaatggttag atcattgact ctatcagtga atggaaatag ttccgttata     14640
     aacacagttt attttccacc aattgaatta aacggggaat atgagtgtgc gctagttgag     14700
     tttaacatgt acaactcaat tcccaacgtg gatgtaaata acaacctctt tcatattggt     14760
     gataaagtta ttattattcc caccggctcc tatgaactca acgatatttc tcaatttatt     14820
     tacaacaagt taaaggatta taatctggaa aatacagtga aaattgtaag caataataat     14880
     acacttcaag tggaaataat tagcagtaaa gaagatatat actttaataa ggagaggtca     14940
     ataggtcatt tgtttggttt taagcaaaga gtgttaaagg caaaccaaaa tcacttgtcc     15000
     gataatgctg tcaacatttt aaaaattaat tccattcgtt tggaatgtaa tattgtgagt     15060
     ggctcttacg ttgataatat accaaatcac gtattacatg agtttgcaat ttcggttcca     15120
     ccgggctata aaatgactgt gacaccacac aatctcatct atttacctat taactgcaga     15180
     gaaataagta ctctctcaat acatatcgtt gatcagaacg gagatttatt gaacttgcgt     15240
     ggtgaaaacg tatcaattcg catacatatt cgcgcaatag aatgataatt tacaataaaa     15300
     gcaacggtat acttcatcaa ccgcgcacta gcagttgtaa agctaaagga acaggattaa     15360
     atcgaaaggg tcttacatta aaaaacaaat tgtttttaaa atcactgggc ttcaaaattc     15420
     aaatctgata ataataataa taagaaagca ttaaaaatga atgaaatttt aaatgttcgt     15480
     gagagaccgt tttcagatga aagtatttcg aaaaaggaat atcatacata ttcctcgtat     15540
     catcaatcat ttaaagcaaa tgatgaaata cgtatttgta ttcaaaatca ggacttgtat     15600
     gtactccctc acgaaagcta tcttaatttt caaggagttg ttaagagagt agcagccgat     15660
     ggtacaagca ccactgataa tatcgaggtt acgtttcgca ataattgtat ggcaaatttt     15720
     attgatgaaa ttagatatga aataaatgga tacgaaattg atagaacacg gtttgttggc     15780
     atgagcagca cccttaaaaa ttatctatcg gaaagtcgtc aggagagtcg caaactttta     15840
     aatgctggat ggagtggtgg aaatgatatt attacaaaag gtaattttaa tttctcgcta     15900
     cccttaaaaa atgtaatggg gtttgctgag gattatagaa aagttttact gaattgtaag     15960
     catgaactta tacttttgct cacaaaaaat ctggatgatg tatatgttaa aaacaaatca     16020
     aaccatacat atgttttgga aatgactaat attagctgga aaatccctca tgtaacaccc     16080
     agtgatgctg caaaaattaa aatgtacgat ataataaaga gtggcgtaaa tttaccgata     16140
     gctttccgta gttgggatac atacattaac ccaaaactga tacagggaaa tcaacacgtc     16200
     tggagcctaa agataggaag taatagagaa aaaccgagat ttgctattat agccttcatg     16260
     ttgaatggag aactaattac aaataattta tccaacctga aagtccactt gaattcagaa     16320
     acgtatccat atgatgactt aaatgtaaac tttgaaaatg ataaatatgc ccacctttat     16380
     gatatgtatg caatgtttca aaagagttat tacaaccgcc cagcagaacc atttttatca     16440
     ccgacagaat ttaaaagtaa acctattatt gtagttgacc tttcatatca aaatgaaaca     16500
     gttaaatcgg gacctatcga cgtgagaatt tcaatcgatt tgaaaaaagc aaacaatgaa     16560
     aacactcaag catattgtct ccttattcac gatcgtttag ttgagtatag tcctttaagt     16620
     gggttagttc aaagaattgt ctaacaatat atcaatcaca taaaatggag aaagaactag     16680
     ttgcaattga tgtacaagga ttttttgata acaacgacaa gttcattcta aaggaaattg     16740
     gagttgtatt tagcaaagaa aataagttta acaataattt cgttatacaa cctccatttg     16800
     atttcactcg tcttaataac aagtcccgaa aaactgctct ctggcttacc aaaaaccatc     16860
     ataaaatttt ttggaacgat ggaataaaca actttaagca aacaagaaaa tatattaaac     16920
     aaatcacttc gggaaaggtg gttttatgca agggaattga aaagaaacgt tttctagaaa     16980
     tctttctcag atcaccgcac ataagagatg ttgaggaatt gggttgccca ccattaaaca     17040
     ccgtaaacat aaaccaattc ccattttgct caatacatat taaaagcggt atttgtgctc     17100
     tgaataatgc gcacaatatt ttaaattttt gcaatggaac tatggtctaa cacttataca     17160
     tatacaatgg ataacagaca aagtggatta ataaaccgaa ttaataattt cacatcccaa     17220
     tttggtgagg aaatttttaa agaagattta aaatatctca ttgatacgag gaatatgttc     17280
     atggataaag gagaagacga tcttaacaaa acggtatatg gtaatcattt tacgttttgt     17340
     aataatggat tcggcgaaga cgcgtgtgcc tgctttttct ataaaaatca tcgagacgga     17400
     gccttaaaac taatgtcatc atatttagtg tataagaaaa gtctgttaca aatttccaaa     17460
     taaacatgag ctaaattcat gacctaaatt caaattaaca tcttcttttg tttgggggat     17520
     gggtgatttt tttttcagct atttctttca ggtcaaaaag ttaaaaaaat aaataaatat     17580
     acttgaattt aaaatttaca tattcttttt gttattgggg tgggagtttg tttctcagtg     17640
     gcaagcaaag ggatcccttt tcaagggtgc ttgctttcag ctgtttcttt gggagtttgt     17700
     ttctcagtgg caagcaaagg gatccctttt caagggtggt tgctttcagc tgtttctttt     17760
     ggacgtgaca acagcccgtg acattctaac acgtacccgt gtgagcacca cactttctta     17820
     atctaagcaa aggacacccg gcacacccca gtaatttctc ccccattaac taggataacc     17880
     caaatatatc gctatgatca cctgacacac cccagtaact tctcacccgc ttaactagat     17940
     tccctcccct cgtttcaccc tatttttcta acttctccca cgttcgatcc cgtcaaccta     18000
     ctcgtcaacc acttaagcag aatgcctccc ctctttcacc ccatttccta gatacaaaag     18060
     ctggatataa ctattgtgga ccctaattta cgatcacccg tcacacccca gtaacttctt     18120
     cccgcttaat aagagtcccg atttcttaaa cgaaattcgg gggagcgaat tcctgaatac     18180
     aattcctaga tataagcaac ttatcaccct aatttacgat cacccgtcac accccagtaa     18240
     tatctccccc gatttctgga ccgaatttcg ggattcctga ttcctgaata caaaccctag     18300
     atacaaaagc tggatataac tattgtggac cctaattaac gatcactcgt cacgcaccca     18360
     ttaactttaa ttacccccac acctgtcaca ttgtcctgat ttattaccct aattagcata     18420
     attaattacc tccccctcca cttttgtatc cagcttttgt atccagaact ctcattttta     18480
     tactact                                                               18487
//
ID   Polinton-1_DY repbase;    DNA;    INV; 14782 BP.
XX
AC   .
XX
DT   15-MAR-2006 (Rel. 11.02, Created)
DT   15-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   A family of autonomous Polinton DNA transposons - a consensus
DE   sequence.
XX
KW   Polinton; DNA transposon; Transposable Element;
KW   Interspersed repeat; Maverick; Tlr; Polinton-1_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-14782
RA   Kapitonov V.V. and Jurka J.;
RT   "Self-synthesizing DNA transposons in eukaryotes.";
RL   Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006).
XX
DR   [1] (Consensus)
XX
CC   Termini are not included in the consensus sequence, which was
CC   built based on multiple alignment of several copies that are >90%
CC   identical to each other. It encodes a family B DNA polymerase
CC   (POLB-1_DY), retroviral integrase (INT-1_DY), ATPase (ATP-1_DY),
CC   cysteine protease (PRO-1_DY) and additional four unclassified
CC   proteins (PX-1_DY, PW-1_DY, PY-1_DY) conserved in Polintons from
CC   different species.
XX
FH   Key           Location/Qualifiers
FT   CDS           1642..4989
FT                 /product="POLB-1_DYp"
FT                 /translation="MKHFKTAYKSVYINEDIIDELNSAIDCLLTLSSEFQE
FT                 KDSGWAIKNFNYFETTIIKLENIPASGYIKAPQKIRARNALINVQNADVFC
FT                 FKWCILAFIANQNHENRTFTTPQQRKYSRERMTKPQSYNININDETIVYGG
FT                 MTLDFSGIKFPIEKIGVRHFEKNNVNFSINIYEIDEAGEKIVGPTIKTKER
FT                 KRNHINILGIDNITQNIMHYAYITNLYTLCSSQFSKGKSGGYFCENCLQCY
FT                 HVKSTTHNKLECGKVSSFYPDPNTTTSFKGYHKKLSPPVVIYADIEAVLEN
FT                 YKTCLNSSASSSTTQVQKHTACAVSFYVAHKDYPNLNELWTYEGKQNNIFI
FT                 KLYLTYIFKFYNFIGVDCIQTFCKTLKEKTLSLYYKYWVNSKKPRDDTFDE
FT                 QLQKGNCCACEKEINASDLDKFFDQFSGEYVGPIHRNCKPKFRLSDPFFPV
FT                 VFHNLSKYDIHLFITELEGDLSPIPCNKELYIALTQTIKINATSRYKIRYI
FT                 DSVRFLNSSLDKLSSYMEDKDFKILSTKFQGEKFKQMRRKGVFPYDYLDSF
FT                 EKFNDTQLPSIDSFYNSLSEENCSIDNFNFAQKVWETFNCRTIKDYLKLYL
FT                 ESDVLILADVFENFRKICKKIYKLDPINYVTAPSISWDAMLKFTNVNLELI
FT                 SDGDMYNFLKRAIRGGLTQCTQRISIANNKYLKNFDPKKPNNFLSYIDANN
FT                 LYGWAMSQPLPLSGFQFLDKEEVDSFDYKNIACDGSIGYMLEVDLEYPADK
FT                 HDLHNYLPFCPENKIPPGGKQRKLIADLTNKSEYIIHLKQLQLCLEHGLIV
FT                 RKVHRVLSFTQSCWLKPYIDLNTQQRKLAENDFEKNFFKLMNNAVYGKTME
FT                 NVAKRRQVALVKHYQSKQNSPGFRQRIARNDFHSVEIFGSDLAAIESTPSK
FT                 IMYDKPIYIGVTVLELSKWLMYEFYYDFLLIKSPSTKIIYMDTDSFILSSE
FT                 EDFYQTIKDNPQRFDTSNYKQENQFNIIQANNKEPGKMKDEHAGKVMTSFA
FT                 GLKAKAYSCLVDGEGNDPECIKKIKGVKKSVIKRLNHVDYIECIKYKKTFY
FT                 GSQRVIRSRSHILYTEIVNKISLNYKDDKRYISPDNCNTLAHGHYNIDNII
FT                 SSNFTNTQ"
FT   CDS           6013..5093
FT                 /product="INT-1_DYp"
FT                 /translation="MSKQQVVNEIHKPARKNFKRRKFVQKGINDTWQIDLV
FT                 EMIPFSKENKGYKYLLTVIDTFSKYAFAEAVKTKSAPDVVQAMETVFRTSK
FT                 CRPKNIQSDQGKEFFNSAFRELMTKFHINHYHTYTHLKASICERFNRTLKN
FT                 RMWKMFSMKGDYKWIHKIKFLVDQYNNSYHRTIKMKPVDVGVKNEEFILKS
FT                 VYNIPKIFPKHKFSVGDFVRISKYKGVFMKGYEPNWTTEVFKVLKVKSTRP
FT                 VTYEIEDYMSNPIQGSFYEEELQKVKDKNAFLIEKIIKRKKNQVLVKWSGF
FT                 DSSHNSWISVNDMLK"
FT   CDS           9296..9841
FT                 /product="PX-1_DYp"
FT                 /translation="MNYVNDFFITLLSNDSLNVFPDNVKCAFTNIVNIPED
FT                 MNDDWEVGITDMYLNNYISKTTAKETNLSEEAEFVSLVNAETFRYKNVAVE
FT                 SKISECGLIFIYTDIIKPRSVGSMRPRCLRVMHYNGKEKNIHFKNIEYYPL
FT                 DIWSPNEISILITDSSGYKVPFETSAVPIFVTLHFRKRRRSNL"
FT   CDS           9891..10357
FT                 /product="PW-1_DYp"
FT                 /translation="MVKSYQDYYVNQCGAGLSNIGTLYVTPRIIQQGRGIG
FT                 NFFSGLFNYIKPLFISGLNAIKNQAAETGKAVINEFGRKPLRNIIQEQSKI
FT                 ALQNLSNKAINKMTRFQNGSGKRNKKRGGRKKRNHLTSKRQRKHTQPSHKX
FT                 KKSSRKLNITDIFSNTX"
FT   CDS           7565..8281
FT                 /product="ATP-1_DYp"
FT                 /translation="MFRQFIHPYTMLICGPSGSGKTTFLENLINKKNDLFN
FT                 VSIDRIIWCYGEESAKPNFNNIEYFKGVPETIENETNEPILLILDDLMMGA
FT                 FNKNVCELFTKGSHHRNLSVIVVTQNIFHKSSHTRDISLNTKYIIAFKNPR
FT                 DKLQFQCLARQIYPENPMELFRIYKEVTEQPHGYLLIDLTQGINDLLRFRS
FT                 DIFNSEYTVCYSDEYGLQKEPKSLESEQTYIVCSQKGQQQTTEGNYKQW"
FT   CDS           10358..11647
FT                 /product="PY-1_DYp"
FT                 /translation="MSNHIECMKGELDLFAPHPTQSSILRTEEVSYNPIAS
FT                 LDGASSIEFVCLGNGETYRDLSSVYLRLVVQLKKNDNSVIEGNAVGVVNNI
FT                 LHSIFRSSSVYLNNILVSQSDNNYHYRAYLQTVLNYGSDASESHLASQGYF
FT                 PNFGRLTSGKYVYPSSNETLKNIFQNSNKVELFGKIHGDIFNQTKLLVNNV
FT                 DLRINFNIEKTAFYLMEKDSESNLKILEAQLFMNHVTVNPSILLAHHHVLQ
FT                 TKNALYPFSKVEVKSFTIYPGNNTLSIDNAVIGQLPNFLAFCMIKNRSYSG
FT                 NRGLDPFNFEHFKMQRFNLMVNGVQVPSQALEFDYSNSENVQSSRGYNMLF
FT                 RSSGIKHYDRGLQITKEMFDTNSFILAFDLTADQSNTTICSNLMSQGTIRI
FT                 EGRFSEPLSEAVTCLVYCEYDSMIDIDKHRNIRTLF"
FT   CDS           11652..12107
FT                 /product="PRO-1_DYp"
FT                 /translation="MNTLQIHNLLTKHIYTKSIFKGVFPSDQLPKTISKYP
FT                 ALIIANTDTSDQPGTHWIAFYFESRKSAEFFDSYGQFPQNKEFVTFLKSNA
FT                 NKYCYNKQQLQGYFSNTCGHYCIMYGLFKCKKKTLKYLLTNFKRNDFSYND
FT                 KLILKMFKSNFKK"
XX
SQ   Sequence 14782 BP; 5333 A; 2405 C; 2369 G; 4674 T; 1 other;
     aaaaaaaaaa caagttgggt gtcattggaa aggatttttc aagccctttc caatggtatg        60
     cttttcacga ttctgaaatt aaaaatacga cttttcataa aaactctcaa aattacaatt       120
     gcacttcttc gcgcacaagc aatcttggaa gggggtgtac ctgcgcgcac aagcagtcat       180
     aaggatgatc gcaagggtgg gggtgagatt tctgttcaag gctatgcacc ttactgtgtc       240
     ctcaattttc tgggaaggta actggtggtt ggattattag ttgagaaata tttagaaata       300
     tcaaacaaac tggttatagg gtcgtgtata cgtatatata aaaaatcata taatcataaa       360
     accgttaaaa aaccgtcgtt cccgtatatt ccagctactt tcagctaaaa gctatggagc       420
     cgttgagaag aaaatctaaa caatctgaag tcatagcgac tttcagctta aggctaccca       480
     cgttttaaat gtatgccttg caaaatgtta cttataaagt aacaatgact agtagtcacc       540
     aataatttca tgatccctga ctgcggtcat ccgaaataat tccctacaga gatatgtatt       600
     tcagattatc tgtgatctgt ctccattttc attatgctag gagaccccat aaaatcaaat       660
     atttatgact ctttgaacct attatcgaga aagtcaagcg gctatttacc tgcatccaaa       720
     cccatagctc gccctccttt tctgacttcc ccattgcagt ctgtgcagtc tgcagtctgt       780
     gaaggctcct taaatcgaga accaatcagg tggattctaa gagtagacac cccctgtaga       840
     tgtcaaactc tctaatcctc gtgtataaaa atggatcccc ttaaattgct caggatcagt       900
     tcttataata cctcagcact gcattcttat aatataattt cggtcgaact tgctcgggat       960
     atcacgtcta accgttttaa ttgtttgtgt ggactcaaac catttactgt gaaaaatttt      1020
     aaaaacgaat taaaatatat aaataaaata tatttataaa aaattcaaaa tggaatcatc      1080
     agtggcttgt gatttgtgca accaatgcat cgaaattagt gagtttgtct ctcattacgc      1140
     gaagtgctca gaacccagta aagcctgcga ggctttaatg ttaaactcta acattagatg      1200
     tgacttatgc tctaatctag taaaaaattg tgaatttgat gatcactacc aacgctgtga      1260
     aggaccccga aatgcattta gcattttaat gggtagagga aaactggatg aagaagaccg      1320
     ccctatgaca tcagctaagt ctataaaacg attgaggatg gaagaggata aggaaatatc      1380
     taacccccca aaaagaaaac aaattgactt aagaagggaa ctcttatgtc ctactcagag      1440
     aacgtcaaca tattttgacc gatatacata aaaatgcgtc ggccagagaa gttaagaaca      1500
     atgcgaatat catattgctt acatcagaga cgacatttcc agtaaaatca tatcgaattg      1560
     atagtccatt atttaaaaga gtatataagt gtatatggta catatataaa gcaaacagat      1620
     gaaggagtta cagtggaaac aatgaagcac tttaaaactg cctacaaatc tgtatacata      1680
     aatgaagaca ttattgatga gctaaattcg gccatagatt gcttacttac attaagcagc      1740
     gaatttcaag aaaaagactc aggctgggct attaaaaatt ttaactattt tgaaactact      1800
     ataataaaac tggaaaacat tcctgccagc ggatacatta aagctcctca aaaaataaga      1860
     gcccgtaatg cgctaataaa cgtgcagaat gccgacgtat tttgtttcaa gtggtgtata      1920
     ctagcattta tagctaatca aaaccatgaa aataggactt ttacaacccc ccagcaaagg      1980
     aaatattcga gagaaaggat gacaaagcct caaagctata acattaatat taatgatgaa      2040
     actattgtgt atggcggaat gactttagat ttttcgggaa ttaaatttcc aatcgaaaaa      2100
     ataggagttc gacattttga gaaaaacaat gtcaacttta gcataaatat ttatgaaatt      2160
     gatgaagcag gtgaaaaaat tgttggtccc acgattaaaa caaaagaaag aaaacggaac      2220
     cacattaata tattgggaat cgataatatt acccaaaaca ttatgcatta tgcgtatata      2280
     acaaatcttt atacattatg ctcttcacaa ttttctaaag gaaaatcggg aggatatttt      2340
     tgtgagaact gtcttcagtg ttatcacgtg aaaagcacta ctcacaacaa actggaatgc      2400
     ggaaaagtgt cctcatttta tccggaccct aatacgacaa catcgtttaa aggatatcac      2460
     aaaaaattat ctcctccagt ggtaatttat gcagacattg aggctgttct tgaaaattac      2520
     aaaacatgct tgaattcttc tgcttcctcg tcaaccacgc aagtacaaaa gcatacggca      2580
     tgtgcagtat ctttttatgt tgcccataaa gattatccta atcttaacga gctgtggacc      2640
     tacgaaggta aacagaacaa catttttata aaattatatt taacttacat atttaaattt      2700
     tataatttta taggcgttga ttgcatacaa acattttgta aaactcttaa agaaaaaact      2760
     ttaagcctgt attacaaata ttgggttaac tccaagaaac cgagggatga cactttcgat      2820
     gaacagcttc aaaagggaaa ttgttgcgcc tgcgagaaag aaataaatgc gagcgacctg      2880
     gacaaattct ttgatcaatt ttctggagaa tacgtaggtc ctatccatag aaattgtaag      2940
     cctaagttta gattaagtga ccctttcttt cctgtagtgt tccataattt atctaaatat      3000
     gatattcatt tatttattac tgaattagag ggggacttaa gtcccatacc ttgcaataaa      3060
     gagctctata tagcacttac gcaaactata aaaatcaatg ctacaagcag atacaaaata      3120
     agatacatag attcagtccg atttttaaat tcaagtttag ataaactatc aagctatatg      3180
     gaagataaag attttaaaat tctaagtacg aaatttcagg gagaaaaatt taagcaaatg      3240
     aggaggaagg gggtgtttcc ctatgactac ttagatagtt ttgaaaagtt taatgatacc      3300
     caacttccaa gcattgatag tttttataat tctcttagtg aagaaaattg tagtatagat      3360
     aactttaatt tcgcacagaa agtctgggag acatttaact gtcgaactat taaagactat      3420
     ttaaaactat atttagaaag cgatgtttta attttagcag atgtgtttga aaattttagg      3480
     aaaatttgca aaaaaattta taagttagat cccattaatt atgttactgc gccatcaata      3540
     tcatgggatg ctatgcttaa gttcactaat gtaaatttag aactaataag tgatggtgat      3600
     atgtataatt ttttaaaaag agcaattcgg ggagggttga ctcaatgcac tcagcgcatt      3660
     tctatagcaa ataataaata cttaaaaaac ttcgatccaa aaaaaccgaa caatttttta      3720
     agttatattg atgccaataa tttatatggg tgggctatga gtcaaccctt accactatca      3780
     gggtttcagt ttttggataa agaagaagtt gattcattcg actataaaaa tatagcatgt      3840
     gatggtagta tagggtatat gctagaagtt gatctggagt atcctgccga taagcatgat      3900
     ttacataatt atttaccatt ctgtcctgaa aataaaattc cacccggggg caagcaaaga      3960
     aagcttatag ctgatttaac taataaaagt gaatacataa ttcacttaaa acagcttcaa      4020
     ctttgtttag agcatggtct tattgtaaga aaggtacacc gagttttgtc ctttacgcaa      4080
     tcatgctggc tgaagcctta tatcgaccta aacacacagc agagaaaatt ggctgaaaat      4140
     gattttgaaa aaaatttttt taagctaatg aataatgctg tttacggaaa aacaatggag      4200
     aatgtagcaa agcgtcgtca agtagcttta gttaaacatt atcaatcgaa acaaaattct      4260
     ccaggtttta gacagcgcat agctagaaat gattttcata gcgtagaaat atttggttca      4320
     gacttagcag caattgagtc aacaccgtcc aaaattatgt atgataaacc catatatata      4380
     ggagtaacgg ttttagaact ctcaaaatgg ctaatgtatg aattttatta tgacttcctt      4440
     ttaattaaaa gtccatctac gaaaataata tatatggata cagattcatt tatactatct      4500
     tcagaagaag atttttatca aactataaaa gacaacccac aacgctttga tacttctaac      4560
     tataagcaag aaaaccaatt taatataata caggctaata ataaagaacc aggaaaaatg      4620
     aaagatgaac atgccggtaa ggttatgacc tcttttgcgg gacttaaggc taaggcatac      4680
     tcttgtttag ttgatggaga aggaaatgac cccgaatgca taaaaaaaat taaaggtgta      4740
     aaaaaatctg ttattaagag gctgaatcat gtagattata ttgaatgtat taagtataaa      4800
     aagacatttt atggctcaca gagagtaatt cgtagtaggt ctcacattct ttataccgaa      4860
     attgtaaata aaattagtct taactataag gatgataaga gatatatttc accagataat      4920
     tgtaacactt tagcccacgg tcattataat atagataata taattagcag taactttact      4980
     aatactcaat aacaaaaaat tattgtatac ccttgtaaat tacaaaacaa tacagaaatg      5040
     taaataaaca aaaaccaaat tgaatttgaa attattttat tgtgtttgat tacttaagca      5100
     tatcatttac agatatccat gagttgtggc tggagtcgaa accgctccac tttacaagca      5160
     cctggttctt ttttctttta attattttct ctattagaaa cgcattttta tcttttactt      5220
     tctgaagttc ctcttcataa aacgaacctt gaatagggtt actcatataa tcttctattt      5280
     catacgttac aggccttgtt gacttaactt ttaaaacttt aaaaacttct gtagtccaat      5340
     taggttcata tcccttcata aatactccct tgtatttact tattctaacg aaatccccta      5400
     ctgaaaattt atgttttggg aatatttttg gtatattata tactgatttt aaaatgaact      5460
     cttcattttt gacacccaca tccacaggct tcattttaat agttcgatga taagaattat      5520
     tgtattgatc tacaagaaat ttgattttat gaatccattt atagtcacct ttcatactga      5580
     acattttcca catacgattt tttagagttc gattgaagcg ttcacatata gaagccttta      5640
     ggtgtgtata agtatggtaa tgatttatat gaaattttgt cattaattcc ctaaaagcgg      5700
     aattaaaaaa ctcttttcct tgatctgact gaatgttctt aggtctacat ttactagttc      5760
     taaaaacagt ttccattgcc tgtactacat ctggggcaga ctttgtctta accgcttcgg      5820
     cgaacgcata ctttgaaaac gtgtcaataa cggttagtaa atatttatat cccttatttt      5880
     ctttactaaa tggaatcatt tcaaccaaat caatttgcca tgtatcattt attccttttt      5940
     gaacgaattt tcggcgttta aaatttttcc gagcaggctt atgaatttca ttaacaactt      6000
     gttgtttgct catgatcagg atttgatttc tttgagttac tttttattat aagacgttgc      6060
     ttgattagat aatagtgatt gcttatatac tagtacatcc cgttttattt caacacgcat      6120
     ctttttagaa atttcaaaac ataatcgagt taaatctatt tgtacatctt tatcatagga      6180
     accctccaaa tcagacagtt gaatatctaa cttttgtaag gatgcacact taggaattat      6240
     atgtttgtga taaagataaa taacttgttg tcgtaatatg gaattccagc acaaaaatgt      6300
     ggtaaaaaag atacccaatc ttaataaaga tctccaggac tcacaatcga actcaatttt      6360
     gttaccatat tgattaatta ctcaataata gtatctggca tcaggaagtc atactggtca      6420
     agcttcagct gtatacgagt atattcctta tatgtgagca cttgcatcca ttcgtcttta      6480
     tcaaatccaa tgtaattgtt tttactttgc tgcatccaaa tcatgaccga aaaattacga      6540
     gaagttgaca gaccacattt caactttagg ttatgaccaa cataatattc gaaaccaaaa      6600
     atgacttcat gattctgggt ctttcgagaa gatttcattc tttttactta tgcacgtatc      6660
     cattggctta gagtgcttta ttcaaactaa aagtatattc tgatcttggc ggtatataaa      6720
     ggaggaaaac tcaccctcag ttgattaaaa agtcaaccaa tcatcatgaa cactgtagat      6780
     cgaaattcaa gcattatagt actttcaata tttactggga aacaacaaac aagtttttgt      6840
     aaaagagtta gcgtttatgc cggccggaac tgtcatacct aatttctttc attttaaacc      6900
     accatttaac attaaggaat tggataatga aactcttaag caactacatt ttaatcatca      6960
     gaaaattaac ggattggact ggtcagctgg agatattccg tatacatgtc ttgaagaaat      7020
     actttcaccg ctaaacaaat accgtacagt tatcgttcgt ggtgaaatta agaaaatctt      7080
     tttaagcaag tatttaacag caaacataat tgatatagat attggaaaaa gtttaactca      7140
     gctacccaat ttttttacca attgtagaat acataagaaa aaacttccac ttcgctgttc      7200
     attaaataat ttgtttaagt tatttgtatt cctagaaaac tcgaattatg aaatatacag      7260
     taatggtgac acatatgtct aaacttaaat aaaaaataat ttgtaaacca tttagatcgt      7320
     ctactatgga ttccgttaaa aagttgtttg gtaataatcc tgagaaaaaa ggatactctc      7380
     gacttatata ttgtaattat tgcggatctg atacgcattt cgagaagaac tgcgccaaga      7440
     aacgcgacca ggaaaatcat aaaaaagcat agtatatttc ataacaaata tacaataaat      7500
     aacggaaaaa tatacatttt atagtttatc ttgtataaaa taaatcagtg aatatacatt      7560
     taaaatgttt cgacaattta tacatcctta cacaatgtta atttgcggac cttcaggatc      7620
     gggaaaaaca acatttctag aaaatctgat aaacaagaag aatgatcttt ttaatgtttc      7680
     aattgatcga attatttggt gttatgggga ggagagtgct aagccaaatt ttaataacat      7740
     tgaatacttt aaaggagttc ctgaaaccat cgaaaatgaa actaatgagc ctattctctt      7800
     gatattggac gatttgatga tgggagcctt taacaaaaat gtatgtgaac tctttactaa      7860
     aggttcccac caccgaaatt tatctgttat tgttgttact caaaatatat ttcacaaatc      7920
     atcgcatacc agagatattt cacttaacac taaatatata attgcattta aaaatcctcg      7980
     tgacaaactg caatttcaat gcctggcaag acaaatttat ccggaaaacc ccatggagtt      8040
     atttagaata tataaagaag taacagaaca accacacggg tatttactta ttgatcttac      8100
     tcagggaata aacgatctct tgagatttag atcagacatt tttaattcgg aatatacagt      8160
     gtgctattct gacgaatatg gtttacaaaa agagcctaaa tcgcttgaaa gcgaacaaac      8220
     atatattgta tgttctcaaa agggccaaca acaaactacg gaaggcaatt ataagcaatg      8280
     gtgataatga gctggtaaaa acaatagtag aaatagtttt aaatacatta cgaggaaatc      8340
     agacagtcaa taaagcgcat ctaagtgctt taaaaaagta taaaaatgca ttgcgatata      8400
     tttcatgtcc aaagcgtaca ttaaactcta agagaaaagt cctaattcaa aaaggtggtt      8460
     ttttaccaat tctaattagt tcgttgcttt caggaatttt tggaaaaatt ttaaaaaatg      8520
     atcaaaaata agcataattt aaataaagta attttaatga acccgaatac cttacaaaaa      8580
     ttacttaata atgatcgagg gaatgaatta ataattacaa aatttttacc aattttaaat      8640
     aataacaaaa taagtgattt tgataaatgg attaagattc gtcaagaact aagtttctat      8700
     caaaataaaa aacgtagtaa atcatggaat acttcaaatg aacaaaaatc atacttaaat      8760
     tcaacgagaa cagctgaatc tcaaacaata gaatcgattg atataagtcc taacacttca      8820
     aaattaaatt caaagttttc accgaacatg tcggagctct cggatttacc tcaaaaaact      8880
     gatgaagaag attttaaatc aaaagaaact gctaagttat tgaatgttaa aaaaaaggta      8940
     aaatccggta ttttactttc aagaaacgaa gagattcctg acttacctcc agaaagtgat      9000
     gatgaaattc caaataaaat tatcaataaa cgaaagataa gcaacacttc gttttcagat      9060
     gataaagaag atataaaaaa acaagcagta gtaagagtaa agcttactga aaaacaacgc      9120
     aggttaagag aaaagttaaa taaaattaaa gcaacggaaa cattaccata tcaaaattta      9180
     aattatataa caggtcgtga aaaattgcga agatcaacta gaaaaaattt agtgcaaata      9240
     gggaaaaaca aacttaattg gatatcttac caatagcaga aatttaaata taaaaatgaa      9300
     ttatgtaaat gatttcttta ttacattgct cagtaatgac tcattgaatg tatttcctga      9360
     taatgtaaag tgtgcattta caaacattgt aaatatcccc gaagacatga atgatgactg      9420
     ggaagtaggc attacagata tgtatctgaa taattatatt agcaaaacaa ctgcaaaaga      9480
     aacaaattta tctgaagaag cagagtttgt gagtttagta aatgctgaaa catttagata      9540
     taaaaacgtc gctgtcgaat cgaaaatatc tgaatgtgga ttgattttta tttacactga      9600
     cataattaaa cccaggtctg ttggtagtat gagaccccga tgtcttcgtg taatgcatta      9660
     taacggaaaa gaaaaaaata ttcattttaa aaatattgaa tattatcctt tggatatatg      9720
     gtctccaaat gaaatctcaa tattaattac tgattcaagt ggatataaag tacctttcga      9780
     gacttccgca gtgccgattt ttgttactct tcactttaga aaaaggagaa ggtcaaatct      9840
     ataaataata catacccaaa taatgcttac ttagaacact aatagtcatc atggtgaaat      9900
     cttatcagga ttattatgta aatcagtgtg gagcaggttt gtccaatata ggaaccctat      9960
     atgtaacccc gcgaattatt caacaaggtc gaggaatcgg aaactttttt agtggacttt     10020
     ttaattacat aaaaccactt ttcatttcgg gtttaaatgc tataaaaaat caagctgcag     10080
     agactggaaa agctgtaatt aatgaatttg gtagaaagcc attaagaaat attattcaag     10140
     aacagagtaa aattgcttta caaaacctat caaataaagc aataaataaa atgacacggt     10200
     ttcaaaatgg cagtggaaaa agaaataaaa agcgaggtgg tagaaaaaaa cgaaatcatt     10260
     taacatctaa acgacaacgt aaacataccc aaccgtctca taaaaraaaa aaatcatcaa     10320
     ggaaattaaa tattacggat attttttcta acacaaaatg agtaaccata tagaatgtat     10380
     gaaaggcgaa ttggatttgt ttgcaccaca ccctacgcaa agttcaattc tacgaaccga     10440
     agaggtttct tataatccaa ttgcatcctt ggatggtgcc tcctcaatcg aatttgtttg     10500
     tttaggaaat ggtgaaacat atcgagatct atcaagtgtt tatttacgac ttgtggtgca     10560
     attgaaaaaa aatgataaca gcgtcattga aggaaatgct gtcggtgtag taaacaatat     10620
     cttacattca atatttagaa gttcatcagt atatttaaat aacatattag tttcgcagag     10680
     tgataataat tatcattata gagcatatct gcaaacagtt ttaaactatg ggagtgacgc     10740
     ctcggaaagc cacttggcct cgcaaggtta ttttccaaat ttcggacgat taacatcagg     10800
     aaaatacgtt tatccgagct ctaatgaaac tctgaaaaat atatttcaaa atagtaataa     10860
     ggtagaacta tttggaaaaa ttcatggtga tatatttaat caaacgaaac ttcttgtcaa     10920
     taatgttgac ttaagaatta attttaatat tgaaaaaact gcattttatt taatggaaaa     10980
     ggatagcgaa tcaaatttaa agatattaga agcacaactt ttcatgaatc atgtaactgt     11040
     gaacccaagc attttattgg ctcatcatca tgttttacaa acaaaaaatg ctctttaccc     11100
     attcagtaaa gtagaagtaa aatcgtttac aatttaccca ggaaacaata cgctatcaat     11160
     agacaatgct gtaattggac aattaccaaa ttttctagct ttttgtatga ttaaaaaccg     11220
     ttcatactca ggcaacagag gactagatcc atttaatttt gaacatttta aaatgcaacg     11280
     ctttaatcta atggtgaatg gagttcaagt tccttcgcaa gctctggaat ttgactactc     11340
     gaactctgaa aacgttcaaa gctcaagagg ctataatatg ctattcagat caagcggaat     11400
     aaaacattat gatcggggtc ttcaaattac caaggaaatg tttgatacga acagttttat     11460
     attagccttt gatttaactg ctgatcagtc aaataccacc atatgttcaa atttgatgtc     11520
     gcaaggcaca ataagaatcg aaggaagatt ttcagaacct cttagtgaag ccgttacttg     11580
     tctggtatat tgtgaatacg attccatgat tgatattgat aagcatagaa atattcgaac     11640
     ccttttttaa aatgaatact ttacaaattc acaatttgct tacaaaacat atatacacaa     11700
     aatcaatttt taaaggagtt ttcccttcag accagcttcc aaaaactatt tcaaagtatc     11760
     cggctttaat tattgcaaac accgacactt cagatcaacc aggaactcat tggattgcat     11820
     tctatttcga aagtcgcaaa tcagcagaat tttttgattc ctatggacaa tttccccaaa     11880
     acaaggaatt cgtgacattt ttaaaatcta acgcaaataa atattgctat aacaagcaac     11940
     aactacaagg atatttttct aatacgtgtg gtcattattg cataatgtat ggtcttttta     12000
     aatgtaaaaa gaaaacgcta aaatatttat taacaaattt taagagaaat gacttttcat     12060
     ataacgataa attaatactt aaaatgttta agtctaattt taaaaaataa aatgcaagat     12120
     atttaagaaa atcaatgtag tttatttatt aagtcgtttg tttagcttat aatattttaa     12180
     cataatattg aaggcctcgt ctcttaaaat tggaagccta tgacactggc acgtatcggg     12240
     tccttccgaa gcgtcatcat cactccaggg acaaagcttg tagtggaatc catatttaga     12300
     atggatcagt tctttatcct ctaagtcctc cagagtgctc ttcaaatata taagctgcgt     12360
     tacgtgctcc tcaaatatca tgtcttcgaa ctgcatcaag aagagctcaa tttgtttgga     12420
     gtccattttc gttatggttc ttttaaggtt ttttaaagac tgatgttgga tttagaaaac     12480
     tcaaaccttt atattggaaa atttcattta cttatttatt tactgataaa aattcaattc     12540
     gtgcagaact atatctattt acatccttcc ccttatatac catatgggta ataccattct     12600
     catttaattt cctaaaaggt gtcttagtac agaatttgtt tacataactc ttaggtagaa     12660
     aaatccaaac atctttttcg tccttgtctg ctaaataaag agctacctta gttccataag     12720
     gtgtcttttt cagcttacaa ccagtgatct tatactcaaa tccaatacat agatcttcag     12780
     tttttgtata accaatcaca ggcttcgatt cattcagagt ctctaggaaa tcctagaaat     12840
     tcaataaaat ttgaacagga tttatttatt aatgtcctat atgcatacca tttctgacca     12900
     acgtgagatt tgattcgtta tgctcttgta actattcgta ttatactaat gcatttactt     12960
     acaattacga gacttttata ctgttcagca ctacatatat atatatatat atatatatta     13020
     caagaacaaa atactacgtg aaagagatac caatatatct gttatgctct ttatatacat     13080
     aaactcagtt aagcctatgt agaatatttt tatatacttg agtatatcta tctcattttg     13140
     tataaatata taacttcata tgaaataaaa ggttactaca aacctaatat aagacagcac     13200
     ttttctcgaa aactcagatt caatttttac tctcagaatg acaaagttgt attgtgagtt     13260
     gtgttcggaa acaaaatcgt ttgcttcacg cagcggttta aaaaaacata ccttaaaagt     13320
     gcataacttc agctatcaaa aatcaaaatc ttcttattat tgttgctttt tctgtcccaa     13380
     tgaacgaaaa ttctggttgc gatataatta caatgttcat ctcttgctga tgcacgatgc     13440
     agaattaaag agtatgcgta aatcaatgga aagttatcaa ataaagataa aacaagtttg     13500
     agaatttaat tttgtaaaat agttttattt aataaatttc tgtataatat agacaaatta     13560
     aaaacctaga tcaaataaaa cgtctagtaa tgaatggtca tcttcatcct tcattattcg     13620
     taaataaatg ttgggttgac ttggctcgat gaactgatca aaaatatgat catcatcagg     13680
     aaactcatag attataggat ctgtgtgcag tatatccata tcgaaatgct gtgcacattg     13740
     catttcttga tcgtctccat tgcctcgtat aagatcattt aaaacgtcct gcgttgccgc     13800
     tccaaaagga aaatcgctcc actcaagaga cgcaaattca cttccaattt ttgtagtggg     13860
     ggtagatgac atagaagggt caaatactcc tcttaagaag cgatctatcg aatcctctgt     13920
     gtcgatagcc tccacataac cttccttcga gccttcaatt atttcgacat cagagtcttg     13980
     agttaatgga acatttattc catttactga gtcaacaaac tctacagtaa gatccattgg     14040
     tatgcagtgc tgaggtatta taagaactga tcctgagcaa tttaagggga tccattttta     14100
     tacacgagga ttagagagtt tgacatctac agggggtgtc tactcttaga atccacctga     14160
     ttggttctcg atttaaggag ccttcacaga ctgcagactg cacagactgc aatggggaag     14220
     tcagaaaagg agggcgagct atgggtttgg atgcaggtaa atagccgctt gactttctcg     14280
     ataataggtt caaagagtca taaatatttg attttatggg gtctcctagc ataatgaaaa     14340
     tggagacaga tcacagataa tctgaaatac atatctctgt agggaattat ttcggatgac     14400
     cgcagtcagg gatcatgaaa ttattggtga ctactagtca ttgttacttt ataagtaaca     14460
     ttttgcaagg catacattta aaacgtgggt agccttaagc tgaaagtcgc tatgacttca     14520
     gattgtttag attttcttct caacggctcc atagctttta gctgaaagta gctggaatat     14580
     acgggaacga cggtttttta acggttttat gattatatga ttttttatat atacgtatac     14640
     acgaccctat aaccagtttg tttgatattt ctaaatattt ctcaactaat aatccaacca     14700
     ccagttacct tcccagaaaa ttgaggacac agtaaggtgc atagccttga acagaaatct     14760
     cacccccacc cttgcgatca tc                                              14782
//
ID   Polinton-1_FoCa repbase;    DNA;    INV; 16297 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-16297
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2493-2493 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.6% identical to consensus. 6-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           3142..6921
FT                 /product="Polinton-1_FoCa_1p"
FT                 /note="DNA polymerase."
FT                 /translation="MNSWKSCTRCIPCGLQFASARRFEKHVANHRRPFRLY
FT                 VCKLCNLEFTQHKAYDIHINSHRCPHCMYEDSDIFAVNNHILTHIKSSTTA
FT                 ASSRQTGSRKRQNDAYPFKEIAAFKGYVRTYRHRNKKKNAPYRTLMEYFSE
FT                 NKRCIYGIIKQCLNDYKSVKIQITLKCKFIRDTPFCDKEEEEYCTQFINSN
FT                 MKVVLNKFYLTDVLNEIDTNFQHQIEIFEKYGSGWNLCEILGSDIRVAEFE
FT                 ILRGGCFVSVPEELAGKKAIINPQMQGNKCFQWAFLIGMHINDIKSLHRAR
FT                 IRQYEKFVNNYDWKCIEFPTTQQNIKTFESRNAEKMFAVNVFGFDDRGKLN
FT                 IKYQSMHIRDKKRKIVNLLYVQTCANNPGHFMYINGIEKLYGSKNHHKRLL
FT                 CYNCLALFPSQARLNKHEELCFCFKKQRVCMPDPYDLREEPVCRFKKFENK
FT                 LKSRFVIYSDFEALCMKVKRRRGKIRQYAKHVPSGYCFVVVSNDEVIYKSL
FT                 YRGKDCMEIFVKELDEICDQLNSLNLNKVPMRNLTLEEQTLYEESNICHIC
FT                 ENVLQEDKVRDHSHETGRFRGAAHRQCNAKYRQKDRIPVLMHNFRSYDSHL
FT                 LLSYVRKLSAKEVKVIPSNSEKYMALLCENYVFLDSFLFLTASLDTLTNDL
FT                 LLGNNFEQDFKPLIQIFGQGAAKEMSRKGIYMYEYMDKWKKFDQKKFPKKS
FT                 DFYNSLASSGVSDVDYKYGKHIFKSYCSDLGDYHDLYLMTDTLLLACVFEK
FT                 FREVALTHYKLDPVHYYSLAGYSWDAALLNTKQVLDLFIDSAMYNTIELGL
FT                 RGGVSMISTRYASARNKYIRKSGKIKDGDNYLFYIDKNNLYGEALLQHLPT
FT                 GDFEWEDAEFVQNLTTEEILKWGDEDNIGRILVVDLGYGSALHPKHSEYPL
FT                 APEKICVNSKLLSSYQTDLISHYNMTYSEKQPKLVPHLGPRKRYAVHYRNL
FT                 KYYLKKGMTLEKVHSVIKFSQSAWLKNYVLFNGSLRQQARTIFEQNLFKFI
FT                 VNSIFGKSAEQVRNREDVRIVSNLEQMKKLTRHSNFKNYQILSPDLVITFL
FT                 DRAVVKLNKPLYIAFTVLDLSKLFMYEWHYDKIGEWFGERAKFLFTDTDSL
FT                 AYSITTEDLYEDLAEHADEFDFSNYDQSHFLYSNVNKKVIGKMTDEAKGNV
FT                 LESFVGVAPKMYSFLGKGIRKKAMKGVKKQIVDKYINHKRFKSVLFKQKKL
FT                 VCRMNLIRSRHHKLYSGNFSKVALHCFDSKRYILADGINTIAHHDCRIVA"
FT   CDS           8697..7735
FT                 /product="Polinton-1_FoCa_2p"
FT                 /translation="MAQRMRLVEDDEYKRLLKRHTPLSQVKEHFFRDASGR
FT                 ADQVLDNSEIPDDIKIQLYGSIMKSVKQQLNQILADPIKVKLSLDKPDAAI
FT                 NADSSADFSSLDHFSSAISSPNSTLNQSFASSKGSATAWDPDTLNEVPQSS
FT                 PLNLDDIILLRNEPANVKATKLIPLMTMLKSRPDLIKWDTNGRVTFFGTEF
FT                 APETNIIDLVNYVTRELKWSHNPAGINRMLTVCKMVNVPTTMLSKDVKQDL
FT                 MGPLEGIRIRSNQTDSASRMGGFKKWKPISSKDNLNSNSDSARSSRDTHGP
FT                 TPMRNVDSGAKRKRRRNQNASTSFGTPNL"
FT   CDS           9563..8970
FT                 /product="Polinton-1_FoCa_3p"
FT                 /translation="MKYIIEIEGFQLHSAFIIKELSIVASDLENHFFVKSP
FT                 YSFDRLHMNDRRIVRYCENRLHKIYWSSGNDKFITVRDYLQELLNRDVDNI
FT                 VYTKGMAKVNVLRNLFKLNCKLIDINTMDDNINQLWDQLRCEYNDLQEMTE
FT                 QQCPLRFHKANPHCSHFKAAVISFYFEKLQHQDEQMLTEESRFSEDVTQIQ
FT                 RPDQEETH"
FT   CDS           10213..9563
FT                 /product="Polinton-1_FoCa_4p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MEIDHGNTFQLLHPFSMSISGITQSGKTQFLKSLLLN
FT                 SNKIVTPAPDRVVICFTEEQEAYRELVSKLPHVELIKGLEFDLEEFNPDIN
FT                 NIIVIDDQMNDAVQSEKIHQLLTKGSHHKSVSVIILTQNLFPQGKHGKTMR
FT                 LNTHYTVIMKSPTFASQINYLSRQVFPNKSRFLPDAYKKATKNPYSYLVLN
FT                 LHPRCDDQYRVIQGILGETDKFVYLPK"
FT   CDS           12973..13551
FT                 /product="Polinton-1_FoCa_8p"
FT                 /translation="MDSYQLRYALLCSIEGFTAVCAIDQLKLIKEDSFSVI
FT                 CNNQTSTEPGMHWVCFRKSKGTDLVEYFDSFALPINMYPKRMLSFCREHGK
FT                 SIKYSQIQYQSNFSDACGDYCLNFLIKRSMAYSYEDIVNEFSETQLTSNDN
FT                 LVKQFVAINFKFPSFSNCEQVCQKECMKRGIDLNGVCTQTSKHCTKIFSRL
FT                 KVH"
FT   CDS           10991..10206
FT                 /product="Polinton-1_FoCa_5p"
FT                 /translation="MSFYLFLPSNVSPLYFPDNRISSFKVKLPKRFQFLPD
FT                 EYEVALTELTYNHSMKTFLRDSDRLIRFRTLVSEREIFTGVLEPHWRGTYV
FT                 LPNLNYSSIVTLCTELNKALQVESGKQITTFNYDSEVNRVSVNAEHSEIQL
FT                 SSLLSNCLGFPDIIKFTGKNTATNPPDCFGSMYHMFVYCDFVQPQIVGDSL
FT                 VPLLRIVDITGREGQTVTQTFRPYYLPISKLEFDTIEILLCNEYGEEIHFT
FT                 KGISVVTVHFRKRSFKHNNGN"
FT   CDS           11666..12970
FT                 /product="Polinton-1_FoCa_7p"
FT                 /translation="MAMINKYSSPSIRGQADLFSLPATDTTVESSFFAEYK
FT                 PVVNIQDSDAKIEFRIVGNSSQYLDLFDHFCYFRVKIICGDGKDLPADADV
FT                 STANLFMHSLFTNCDVSINQQLVSTSNNCYMYKAYMETLLTFGRDYINSQG
FT                 TCPLFILDTEEGKLDKANTGYEGRKKYIASSSPLELIDKLKFDLSYQQRYI
FT                 LNDTTVNISLTRATELFSLLYPGPKSGDPDLNPKIKFLDASLFVRKHVLYP
FT                 SIVLSHQKLLDSGHSARYPFKKSDVKFFSIPKSSQSFIEENVFMSTVPSRI
FT                 ILCLVPSSGFIGDYKINPFVFKNYKINFISLSVNNVPIPIRGLNLDFDNNA
FT                 YLLPYYMLFCSLGIAGQDQGLTFDRKKFAEMFTFFAFEINHSADSTLHLEK
FT                 TGSVRVEIKFASAVPEAVNCLVYSEHQRVLEIDKFRQISVQ"
FT   CDS           13557..14480
FT                 /product="Polinton-1_FoCa_9p"
FT                 /note="integrase."
FT                 /translation="MSFEKLNEIYFDPANPGSFGGPERLSKVAHISLQKAK
FT                 EFLQGHQTYTRNKYVRHKFPRRKIVVPSIDYLWQGDLITVTKFSRKNKGIK
FT                 FLLTVIDVLSRYAFVRPLSNKTCSVVAKAFQDILDTSGRKCKYLQTDRGLE
FT                 FRGAAFLKILDMNKINLFHNHSELKAAMIERFNRTLMLRLNKFFTFTNDTK
FT                 YIDNLQDFVQSYNSSVHRSINCRPKDVKPSNQFNVWMKSYEDLQKSKPSTP
FT                 KFRIGQYVRIKIQKATFEKGYASTFTTDLFKIREIVNSIPVTYKLSDNTGE
FT                 IILGVFYPEELSLVKI"
FT   CDS           11154..11663
FT                 /product="Polinton-1_FoCa_6p"
FT                 /translation="MKRLHIFDHSEYHKALHEQIGNGIPVFNGYRQKGGGL
FT                 GGILGYIGRYALPLLNKYILPHAKNALINTISDVTSGVPLKSSIKSNATSL
FT                 LNNVGNHIAGRQAGGNMVRTKRVKSSSISSLPLRSPAKKHCSVVRSKQTKG
FT                 YNKKRNNKIKKISKTKTSNRAKPRSRSDIFG"
XX
SQ   Sequence 16297 BP; 5174 A; 2847 C; 3117 G; 5157 T; 2 other;
     tgttgttata acttgaccat tgttaggcca agttataaca aatatgaaat tatcaaaagt        60
     gcatgcatgc aattgggcac gcaatgccaa aatgctcata tgagaatcag agcttctgca       120
     atgtttgaga ttgactaaac atgggattgt ttaaagtgta agcatgtatg caatgtcaaa       180
     atgttcatat gagaatggga gttttagcga cacttgagtg aacgagatcg tctaaacatg       240
     ggattgtttt taactctagt tgttatacaa tgccaaaatg ttcagatgaa tatgatcgtg       300
     cttgtgacaa cccagtgaac agactggaaa taccgaccag acggttaaaa agttaattta       360
     ttaattaatt aactaattca aaacagttta aatgaaaaat tgttagcaag ttggaagtga       420
     tatatgtgaa gtgatgaaca atgccaaaaa cgcgttattg tccagtcgaa ccgaatccct       480
     tatcaccgcg cggctcgcgg gataagaact cacttctttg aacgccgtgt tcttcgtctt       540
     tcttagttcc ttcaacgtat cgcactggtc cgtggtacat tgggattact gcaagctgcc       600
     cgaggcgtga cgccgctttg taagcgaagt tttcgctcga gttgttgtgc aagataatct       660
     tcatcgtccc agtataatca tggtcgatta tgccacctta aataaatttt ataaatttgt       720
     aattattcaa tttgtaacag taatgtaata atgagcaaca aacctgctgt ggatatcatt       780
     gttgctgcgg ccaatcctga cctcccctta atcaaaccaa agtggttgag gggcagtata       840
     acttggatcc ccgtctccac cacaccaaca ccgccaccac tgatttcgcc agagttttga       900
     gaaaataggt catatgctgc tgatccaggc gtagccttcc tcggaaacat tgcccgtcta       960
     tgacgacgaa caaagataag tccgtcaact gtgtgagaaa ttaatagaca acaattttag      1020
     ttaattaatg aagtattgga atttatttat tttcagaatt gatccggtgc taatttgaag      1080
     gtaagtattg agaggattta tggagcaata actaataatc tagtatttgt aaccaaaatt      1140
     tgaattttaa aacttttagt gagcttaaca tcaaataaag ctctaagcgt ccggttttgc      1200
     cgggagcatg ctaccaacgt cgttgcgcat ttcttctaac gcttttacta atgaccaata      1260
     gtggtcgacc agaatatttg cgcccacatt ttgatttttg cgtaaagata aatatgtttt      1320
     tgagttgtta tgccatgttt ggagtcggag gtagtattcg cctcctaaaa acccctccca      1380
     ccaaattgaa ttttgcgaat ctttcttctc ttcgtaggac gagaagtttt tcttaattgt      1440
     acctggctgt tcacctgctc ctccgccgct gaagtgaggc tggggatcct tcttggatgt      1500
     cttccgctta gcgtccttca cggccgactt gacttggtcc ttcacgatcc tcttcgcagg      1560
     cttcttatcg tcgtcgcctg aaagtgagca attaatttag ttaatgtttt gcattgagta      1620
     tttgaaaata atcgaattat ataaaatatt aatctacgtc tcgaatgtgt taatatttaa      1680
     aattaataaa taaaaaaata ttaccagctt ttcgcttagt tccagatccc gatccctgcc      1740
     taggtccttc gttagacttt ttcatgggct tcttttccgc atccttaact tcttctcgtc      1800
     tacctgtaaa taagagcgta aacgtaatgt aaatttacaa attaaaaaat aaaataaatg      1860
     agtaaaataa aacgataaat cttacggtcg ctatccttat gtttcttctc ggcttccttt      1920
     ctgcccttgt gggtcgtctt gttcttggcg tctcttctcg gggatcggtc cgattccgag      1980
     tcgtccgacc aaattgcttt cttgctccta ggccttttac cctcatcgct gctgcccgac      2040
     gaactgcgat gacttgaccg tgaagaacta ctatcgctgg aactgcggct cgtgctgcga      2100
     gtggcgctgc ggcttctgcg attatcgttt tctgaaatag aaattaaatt gtagattcaa      2160
     ataatttttt ctgttttctt tgcttttgaa gcaatttgct taagaatatg tctgaataaa      2220
     atttctgaaa gaaaaaaaac ttactttttg gcatgatgaa aaattttctt cttgttcaca      2280
     attcaaagtt aactcctcga aattatttct ttgactaata cgactaaatg gagatcgtcg      2340
     tcttttatat cgtgatttaa tctcaaaatt gaacatgatg acgacagtaa acaagaatat      2400
     aaaataatac gataacaagt gaatacttgc ttgttaatgg agtgatctaa ttaattactt      2460
     tgttgtgact atgcgtatta tcttctttgt ttgagttatt ttctttgtaa caagaggtat      2520
     ttagtagatt gttattaaat tattttttat ttatttttaa tacttctttc tgtgtacttg      2580
     atctttgaca ttttagtcgt catgatgtca cttcagtagt ataaatatga gaaccgaatt      2640
     atttttaaat tccatttggt atttgattat acacccgata tcaacacgcc aaattgtcac      2700
     aaataattta agctatcaac tcacaaaagt atgatacaca tacgtaaatt atgtcagctg      2760
     atgacataat tacttaattt aattgagatg atgatgatat aataattata ataaactttc      2820
     ttattattta gacgcaaatc tcggaatttt gtcgtattgt cgctgctgct gctgctgctg      2880
     ctgctgctgc tgctactact actcgcggct ggtgatgctc gaaggaatga aacaatctat      2940
     gtgagtacga ccaccacatt tatgtataat gacaatttaa taattaaata ctgtagcaga      3000
     ctggagaacg agcggattct tttataagcg gaggaatata tgcgttttca cttctctcat      3060
     atcaatgtgc gtccttgcga atttatgatt tattcaatat ttaatctttc ttatcctcat      3120
     ttcgtgtcat aatttttata gatgaattca tggaaatctt gtacgagatg catcccatgt      3180
     ggacttcaat tcgcctcagc aaggcggttc gaaaaacacg ttgcgaatca cagaaggcct      3240
     tttagattat atgtatgcaa gttatgtaat ttagaattca ctcaacacaa agcgtacgat      3300
     attcatataa attcacatag atgtccgcat tgcatgtatg aggacagcga tatttttgct      3360
     gtaaataatc atattttgac gcacataaaa tcttctacga cggcagcaag cagtcgacag      3420
     acgggatcga gaaagcgaca aaacgacgca taccctttta aagagatagc tgcatttaag      3480
     ggatatgtca gaacatatcg acatagaaat aagaagaaaa atgctccgta tcgtacatta      3540
     atggaatatt tttcagaaaa caagcgttgt atttatggca ttattaaaca atgcttaaat      3600
     gactacaaat ccgtaaaaat tcaaataacc ctgaaatgta aatttattag agacaccccg      3660
     ttttgcgaca aagaagaaga ggaatattgt acacaattta taaattcgaa tatgaaagtt      3720
     gtattgaaca aattttatct gactgacgtt ttaaacgaga ttgatacgaa ttttcaacac      3780
     caaattgaaa tattcgagaa atatggttcg ggatggaact tatgcgaaat tctaggaagc      3840
     gatattcggg ttgccgagtt cgagattttg cgaggtggtt gctttgtatc ggtccctgaa      3900
     gagttggctg gaaagaaagc aattatcaat ccgcaaatgc agggaaacaa atgctttcaa      3960
     tgggcttttc tgattggcat gcatattaac gatataaagt cacttcatag agcaaggatc      4020
     agacagtacg aaaaatttgt aaataattat gattggaaat gcattgagtt tcctacaaca      4080
     cagcagaata tcaaaacatt tgaaagtcga aacgctgaga agatgttcgc tgtaaatgta      4140
     ttcgggttcg atgatcgagg gaagctaaat attaaatacc aaagtatgca catccgagat      4200
     aaaaaacgga aaattgttaa cctactttac gttcaaacct gtgcaaataa tccaggacat      4260
     tttatgtaca taaatggaat tgaaaaactt tacggttcta aaaatcatca taagcgatta      4320
     ctgtgttata attgccttgc tctatttcca agtcaagctc gcttaaataa acacgaagaa      4380
     ctttgttttt gtttcaagaa gcaacgcgtt tgcatgccag atccctatga tttacgcgag      4440
     gagcctgttt gtcgatttaa aaagtttgaa aataagttaa aatctaggtt tgtcatttat      4500
     tcggattttg aggctctctg tatgaaagta aagcgaagaa gaggaaaaat acggcagtac      4560
     gctaaacatg ttccgagcgg ttattgtttt gtagttgtct caaacgatga agtgatttat      4620
     aaatcgttat atcgtggaaa ggattgcatg gaaatattcg taaaagagct tgatgaaatt      4680
     tgcgatcaac taaatagttt gaatttaaac aaggtgccca tgagaaatct tacattagaa      4740
     gagcaaacat tgtatgaaga gagtaatatt tgtcacattt gtgaaaatgt tctccaggag      4800
     gataaagtaa gggaccattc acatgaaact ggacgcttta ggggggcagc gcatcgtcaa      4860
     tgtaatgcca aataccgtca aaaagataga ataccggttt taatgcacaa ttttaggagc      4920
     tatgattcgc acttactgct tagttacgtc agaaaactgt ctgcgaaaga agtgaaagtg      4980
     attccgtcta attctgaaaa gtatatggcg ttgctctgtg agaattacgt ttttctggat      5040
     tcgtttctct tcctcacagc ctcgctggat actctgacga atgacttgtt gttgggaaat      5100
     aattttgagc aagacttcaa accattaata cagattttcg gacagggtgc ggctaaagag      5160
     atgtccagaa aaggaattta tatgtatgaa tatatggata agtggaaaaa gtttgatcaa      5220
     aaaaagtttc ccaaaaaatc cgacttttac aattcattgg caagttcggg cgtttcagat      5280
     gttgattaca agtacggtaa acatattttc aaatcatatt gctcggattt aggggattat      5340
     catgatctct atttaatgac cgatactttg ttgttggctt gtgttttcga gaaatttcgt      5400
     gaggttgcct tgacacatta taaactagat cctgttcact attattcgct agcagggtat      5460
     tcatgggatg ctgcattatt aaatacgaaa caggttttag atttgtttat cgattctgcc      5520
     atgtataata ctatagaatt aggactccgc ggtggtgttt caatgatttc gacgcgatat      5580
     gcttcggcga ggaataagta tatacgaaaa agcggaaaaa taaaagatgg agacaattat      5640
     cttttttaca ttgacaagaa caatttgtac ggggaagctc ttcttcagca tttgcccaca      5700
     ggagattttg aatgggaaga cgcagagttc gttcagaatt tgacaacgga agaaatttta      5760
     aaatggggcg atgaagataa tatcgggcga attttagtkg tggacctagg gtacgggtcg      5820
     gcattgcacc ccaaacattc agagtacccg cttgcccccg agaaaatttg tgtaaacagt      5880
     aagctacttt cttcgtatca gacagacctt atttcgcatt ataatatgac ttattctgag      5940
     aagcaaccta agctcgtacc gcatttgggc cctcgtaaaa ggtacgctgt tcattatagg      6000
     aatttaaaat attatttaaa gaaaggaatg actttagaaa aagtacacag tgtaattaag      6060
     ttcagtcaat ctgcatggtt gaaaaattat gtcttattta acggttcttt gcgtcaacaa      6120
     gcacgaacca tttttgaaca aaatctgttc aaatttattg taaatagcat tttcgggaaa      6180
     tccgcagaac aagtacgaaa tcgagaagat gttagaattg tgagtaacct agagcagatg      6240
     aagaagttga ctagacattc gaatttcaaa aattatcaaa ttttaagtcc tgacctcgtc      6300
     ataacttttc ttgaccgcgc agtggtgaaa ttaaataagc cgttgtatat tgccttcacg      6360
     gtactcgact taagtaaact ctttatgtat gagtggcact atgataaaat tggcgagtgg      6420
     ttcggggaaa gagcgaaatt cttgtttaca gatactgatt cattagcata ttcaataacc      6480
     actgaagatt tgtacgagga cttggctgag cacgctgacg agtttgattt tagtaattat      6540
     gaccaatcac actttcttta ttcgaacgtc aacaagaaag ttatagggaa gatgacagat      6600
     gaagcaaaag gaaatgttct agagagtttc gtaggtgttg cgccgaagat gtattccttt      6660
     cttggaaaag gtataagaaa gaaagcaatg aaaggtgtca agaaacaaat agttgataag      6720
     tacattaatc ataaacgatt taaatcagtg ctattcaaac aaaagaaatt ggtatgcaga      6780
     atgaatctga ttcgttcacg gcatcacaaa ctctattctg gaaacttttc gaaagttgca      6840
     ctccattgct ttgattcaaa gagatacatt ttagctgatg ggattaatac catagcccat      6900
     catgattgtc gcatcgttgc gtaaaccgtt tacatcggtt agaatttatg ttaagtgtat      6960
     atgtgaaata ataaaattaa gagttgtaaa ttgcatgaag taaacgaaaa tggttatatt      7020
     tcattttaaa tatattagtt ttatatttgt acaaacatgt aagtcgagtc tatgcaataa      7080
     atattttcaa aagaaatttg atccttttgc gacaaagtgg acaataatct tgtgtacaca      7140
     cgcagtctaa acacatactt aaatgggcac aaggcagaac cacgaatctc gcttcagatg      7200
     catcacaaat tttgcagata ggatcaacca ttacggtagc cagaattgga gttccagcag      7260
     ctgcagctga aaggtaatca ttataatatt ttgcatcgtc tgattttttc tgtagcgaaa      7320
     ctaacaaaat ttttaccatt ttcagaatga ggttcttcag aggcggtatc aacagaaaaa      7380
     tttttctata gaaataaaac aaagcttgta attctaatat tactaataca aatttgactt      7440
     gaaatttttt ttgataaaat taccttctga ttggctttgg ctttgttaac caataaatat      7500
     gtacacttat tcgaaaaaag agcgtgttca atccaaggat tatcttctgg caaccaattg      7560
     tgcgcgccga ccccacagaa ataacaaata actttatctg attcgccgga ataataaaat      7620
     ccacattcgg ccagcgtatg gggtgtttgc gccttattgg tcggccatcc ttcgtacgat      7680
     tgaagccgtt tttggaaagt gctcatgtcc ttattaaaca tgttgaaagg tttataagtt      7740
     aggtgttccg aaacttgtgc ttgcattttg atttcggcgt cgttttcttt tagcacccga      7800
     atctacatta cgcatcggcg taggtccatg tgtatccctc gatgaacgag ctgagtctga      7860
     gttagaattt aagttgtctt tacttgatat aggtttccat tttttaaagc ctcccatcct      7920
     agaagcgcta tcggtttgat tagaacgaat tctgattcct tccagtggac ccattaagtc      7980
     ttgcttaaca tccttggaca acattgtcgt tggaacgttt accatcttac aaactgttaa      8040
     catacgatta atacctgcag gattatgact ccacttcaat tctcgtgtta cgtaatttac      8100
     caaatcaatt atgttggttt ccggggcaaa ttctgttcca aaaaaagtta cccttccatt      8160
     tgtgtcccat ttgataagat cgggccttga tttcagcatg gtcatgagag gaataagctt      8220
     cgtagctttg acgtttgcgg gctcatttct gagtaagata atatcgtcca aatttaaagg      8280
     agaactttga ggaacttcat taagtgtatc tggatcccac gccgtcgctg aacctttcga      8340
     cgacgcgaaa ctctggttta aggttgagtt tggtgacgat atagcagatg aaaaatgatc      8400
     tagggagcta aagtctgcac tactatcggc attaatcgct gcatctggtt tgtctaggct      8460
     aagtttgacc tttataggat cagctagtat ttgattcaat tgttgcttta cacttttcat      8520
     gatggaacca taaagttgaa tttttatgtc atcagggatt tcagaattat caagtacttg      8580
     atcggctcga ccacttgcat cacgaaagaa atgctctttg acttgagata gaggggtatg      8640
     tctctttagc aaacgcttgt attcgtcgtc ttcaaccagt cgcattcttt gtgccatttt      8700
     ataaccccaa ttgtgagcca atggctctac ctgcaattgc acctaatgct gataaaactg      8760
     gtgaaatcag aaaaggtaga aaaccaccct tttgcaataa taagtgcttt ttcttcttgt      8820
     gtgataaagt tcgttttgac aattttctta ttgagtcttt gtgcaatgat aactttttta      8880
     atttctgttc tgctaccgga aaatttccac atacaatatt catagcaatc tctgtgagag      8940
     ctctaatttg gtcgggagtt gccgcttcaa tgagtttctt cctggtctgg tcgttggatt      9000
     tgtgtaacgt cttcagaaaa ccttgattcc tctgtaagca tttgctcatc ctgatgttgc      9060
     agtttttcga aataaaacga aattacagcc gccttgaaat ggctacaatg gggatttgct      9120
     ttatgaaatc gtaacgggca ctgttgctct gtcatttctt gcaagtcgtt atattcacat      9180
     cttagctgat cccataattg attaatgtta tcatccatag tattaatgtc aataagtttg      9240
     caatttagtt taaacaagtt tcgtaaaacg ttaacttttg ccattccctt agtatataca      9300
     atattatcta cgtctctatt caaaagttct tgtaaataat ctcgtacggt aataaatttg      9360
     tcgtttccag atgaccaata aattttatgc aaacgatttt cgcaataccg tacaattctt      9420
     ctatcgttca tgtgcaatct atcgaaacta tacggtgact tgacaaaaaa atgattttcg      9480
     agatcagagg cgacgattga caattctttt ataataaatg cactgtgcaa ctgaaagccc      9540
     tcaatttcaa taatatattt cattttggta gataaacaaa tttatccgtt tcacctaaaa      9600
     taccttgtat tactctgtac tgatcgtcac aacgtgggtg caaatttaac actaaatagg      9660
     agtaaggatt ttttgtagcc tttttataag cgtcgggaag gaagcgtgat ttgttcggga      9720
     aaacttgtct gcttaagtaa ttaatttgtg aagcaaacgt aggcgacttc ataattactg      9780
     tgtaatgggt atttaatctc atggttttac cgtgtttacc ttgcgggaat aaattttggg      9840
     ttaaaattat tacagagact gatttgtgat gtgacccctt tgtaagtagt tgatgaattt      9900
     tttcgctttg aacagcgtca ttcatttgat cgtcaattac aataatatta ttgatatccg      9960
     gattaaattc ctccagatcg aattccaagc ctttgattag ttcgacatga ggtaattttg     10020
     acactaattc tctatacgct tcttgttcct ctgtgaagca tattacaacc ctatctggtg     10080
     ctggagtgac aatcttattt gaatttagca acaaggattt taaaaattgt gtcttgcctg     10140
     attgcgtaat tcccgaaata ctcatagaaa aaggatgtaa caactgaaat gtattaccgt     10200
     ggtcaatttc cattgttatg cttaaaggat ctttttctga aatgaactgt cacgactgag     10260
     attcctttgg tgaaatggat ttcttctcca tattcattgc atagcaatat ttcgatggtg     10320
     tcgaattcca acttactgat tggtaaataa tatggacgaa acgtttgcgt tacggtttga     10380
     ccttcacgac ctgtgatatc cacgattcgt aatagaggaa ctagactgtc accaacaatt     10440
     tgaggttgta caaaatcaca atagacgaac atatggtaca tactcccgaa acaatcaggt     10500
     ggatttgtag cagtattttt tccagtaaat tttataatat cgggaaaacc cagacaattt     10560
     gacaataagg acgatagttg aatttcactg tgttcagcgt ttaccgatac acgatttacc     10620
     tcagaatcgt agttgaaagt ggtaatctgc ttcccgcttt cgacttgaag tgctttattt     10680
     aattctgtac ataatgtaac tatggatgaa taatttagat tcggtaatac ataggtacct     10740
     cgccagtgcg gttctaaaac cccagtaaaa atttcacgct cgctaacaag ggtacgaaaa     10800
     cgaattagtc tatcgctatc tcgcaaaaac gttttcattg agtgattata tgttaattct     10860
     gttagagcaa cttcgtattc gtcaggtaaa aattgaaaac gtttcggtaa ttttacctta     10920
     aaggaagaaa ttctgttatc tggaaagtaa agagggctaa cgtttgaggg taggaataaa     10980
     tagaaggaca ttttgtcgag agttcagagt tccataaaac tttaaactat taatgaagac     11040
     attttgagga tatgtcctca tatttatatc gttgctcgta gcttacagat atattgtgtc     11100
     gaatcgtcgc ttatgaaaag atcataattg tagtgtacta actaaggcgc aaaatgaaac     11160
     gtctgcacat atttgatcat tccgaatatc ataaggctct acacgaacaa attggaaatg     11220
     gaatcccggt atttaacggc tatcgacaga agggtggtgg tttaggaggt atattaggat     11280
     atataggtcg atatgcgctg cctcttttaa ataaatatat tcttccgcat gctaaaaatg     11340
     ctcttattaa cactatttct gatgtgacga gcggtgtacc tctaaagagc tcaattaaat     11400
     caaacgcaac gagtttgtta aataacgttg gtaatcatat agctggtcgt caagcgggag     11460
     gcaacatggt aagaacaaag cgagtaaaat ctagttccat aagttcatta ccgcttaggt     11520
     cgccggcaaa gaaacattgc tcggttgtta gatcgaaaca aaccaagggt tataataaga     11580
     aaagaaataa taaaatcaag aaaatatcta aaactaagac atcaaataga gccaagccaa     11640
     gaagcagaag tgatattttt ggataatggc gatgattaat aaatattcaa gtccatcaat     11700
     tcgcgggcaa gccgatcttt tcagtttgcc tgcgaccgat accaccgtcg aatcgagctt     11760
     tttcgccgaa tataaaccag tggttaatat tcaggatagc gacgctaaga tagaattcag     11820
     aattgtagga aattcttcac agtacttaga tttattcgat catttttgct atttccgtgt     11880
     aaaaataatc tgcggggacg gaaaagatct acctgccgat gctgacgtta gtacagcaaa     11940
     tttgttcatg cattcactct ttacgaattg tgatgttagt atcaatcaac aattggtgtc     12000
     tacgagtaat aattgttaca tgtacaaggc atatatggaa actctattga cgtttggaag     12060
     ggactacatt aattctcagg gaacttgtcc cttatttatc ttagataccg aggaaggaaa     12120
     actggataaa gcaaacactg gatatgaggg aagaaaaaaa tatatcgcat cctcgagccc     12180
     tctcgagcta attgataaat taaaatttga tttgtcctat caacaacgtt atatattaaa     12240
     tgacaccact gtaaacatta gcttaacacg ggccacagaa ctgttctcat tactttaccc     12300
     aggacctaaa agtggggatc ctgatctgaa cccaaagata aaatttttgg atgcaagttt     12360
     atttgtgaga aaacatgtcc tttatcctag tatcgtcctc tctcatcaaa aactcttaga     12420
     tagtggccac agtgccagat atccttttaa aaaatctgat gtaaaattct tttcaattcc     12480
     gaaatcgagt caatccttca ttgaagaaaa tgttttcatg agcactgttc cgtccagaat     12540
     tatattgtgt ctcgtcccta gttcgggttt tattggcgat tataaaatta atccttttgt     12600
     gtttaagaat tataaaatta attttatttc cttgtcggta aataatgtac caatcccaat     12660
     tagaggttta aatctcgatt tcgataataa tgcgtattta ctaccgtatt atatgctatt     12720
     ttgttcgctt ggaattgccg gacaagatca aggattaaca tttgaccgga agaagtttgc     12780
     tgaaatgttt acattttttg ctttcgagat aaaccatagt gcggattcga cgttacattt     12840
     agaaaaaact gggtcagtac gagtagaaat aaaattcgcc tcagcagttc cagaagcagt     12900
     taattgctta gtatactctg agcatcaacg tgttctcgaa atagataagt ttcgacaaat     12960
     cagcgtccag taatggattc atatcaacta agatatgccc tgctttgttc catcgagggt     13020
     tttacggctg tgtgtgcaat agatcagtta aaattaatca aagaagactc tttctcagtt     13080
     atctgtaata atcaaacatc caccgaacct ggaatgcact gggtttgctt caggaaaagt     13140
     aaaggtaccg accttgttga atatttcgat agctttgcat tgccaataaa tatgtacccc     13200
     aaacgtatgt tgtcgttctg tcgtgagcat ggtaaaagta taaagtattc tcaaatccaa     13260
     tatcagtcga attttagcga tgcatgtggt gattattgct taaatttctt aattaaaaga     13320
     tctatggcat acagctacga agatatcgta aatgaatttt cagaaacaca actcaccagt     13380
     aatgataacc ttgtaaagca atttgtggcg ataaacttta aattcccttc attttctaat     13440
     tgtgagcaag tttgtcagaa agagtgcatg aaacgtggga ttgacttaaa cggtgtgtgt     13500
     actcaaacca gtaaacattg cacgaaaata tttagtaggc taaaagttca ctaacaatgt     13560
     ctttcgaaaa gttaaatgaa atttatttcg atcctgcgaa ccccggaagt ttcggtggtc     13620
     cggaacgact ctctaaagtt gctcatattt cattgcagaa ggcgaaagag tttttgcaag     13680
     gccaccaaac atatacaagg aataagtacg ttcgtcacaa atttccaaga cgcaagattg     13740
     ttgtaccgtc aattgactat ttatggcaag gtgatttgat tactgttacg aaatttagca     13800
     gaaaaaataa gggtataaaa ttcttactaa ccgtaatcga cgtattaagc cgttatgcat     13860
     ttgttagacc gttgtcaaat aaaacctgct ccgtcgtagc aaaagcattt caagatattt     13920
     tagacaccag tggtcgtaaa tgtaaatatc ttcaaacgga ccgaggtctt gagtttagag     13980
     gtgcagcctt tctcaaaata ttagatatga ataaaataaa cttgtttcat aatcattccg     14040
     aactcaaagc tgccatgata gaaagattta atagaacgct aatgcttcgt ctgaataagt     14100
     ttttcacatt tacaaatgat acgaaataca tagacaattt acaagacttt gtacaatcct     14160
     ataattcttc agtgcatagg tccataaact gtcgaccaaa agatgtaaag ccttccaatc     14220
     aatttaatgt ttggatgaag agttacgagg atttgcagaa gtcaaagccg tctactccta     14280
     aatttcgaat cggacagtat gttagaatta agattcaaaa agcaacattc gagaaaggtt     14340
     acgcttcgac gttcaccact gacttgttca aaattcgaga aatcgtaaac agcatacctg     14400
     tgacatataa gttaagtgat aatacagggg aaataatttt aggtgtattt tatcctgagg     14460
     aattatctct cgtaaaaatt tgaaattagt tcccgaaaaa gtttctcgga aacctctgaa     14520
     ttatgaggct tataattttt tttttttaaa ttagcattcc cgaaccggtt ttgaaaatga     14580
     aataagcagc aataaataaa cataaaatac ataaaaaaaa tatccgaata aaaatataaa     14640
     tagaggcaat agtatttaag gagaaaattt gcgagtatta tccgcatttg ttcgctgagt     14700
     tcgaacctat tcacaagtct ataagatgga aaacagtctg aaggacttag cctcagacga     14760
     cgaaaaaatt acatctgaac aagtgcctga agatgcgcct gtttctgcaa atgagcgacc     14820
     caagcgtggt aagcccgatc tggatgggaa agccggttct tcgagtaaac cgtcgactgc     14880
     tcagaaactc aaaaagttca tctgtaaaag aaggaaaatc gaaaaatctt cacaagctcc     14940
     gttagcatca ggtactcatg tttttcatag gaagaattct tccgaatcat tgcttggcta     15000
     aggatcgtat attcatatgt aggtgttgaa ttttcatcgt ctggaacatc ttcatcgtcg     15060
     gcatcatcat ccgacaacga aggggctcat ggaacagacc ttaccgcagt ttgtggtatg     15120
     agcaaaatta tgccaaagcc atttttcaag ccaaggttga gcgctagaat tgatgatcac     15180
     tcgattgagt ggtacacctt aggcaatgag atcgttttag acattaagct ttgcggttac     15240
     agatgtacag aatactataa taatcatgtg agattccgag ggcactattt acatgaatta     15300
     cttaattttt tgaacgaaat accgaaaatt tatgaaaccc aacttcctac acaaactgct     15360
     ccgctcaaat attaaaaact ttgtaaaggc ttagaataat tagttaatat ttgtaaatgc     15420
     agatcttatg gaccaccttt ttccagatca tttgctaaat ggttgtatcg tgtttaataa     15480
     ggggttcgga ggaaagtctt acttgcaatg tacgacaatc ggtgaagaaa ttaccatcac     15540
     cattggcgga aattcgcttt ttgagttcat ttcaatgaac agaagtcagt ttggcgagtt     15600
     tttgaaagtg ttgaatgaaa tgaaaatcga gtgtcacaat ctcttcgatt tggacggacc     15660
     tttagactta actactagac aataggattt tagttaaata tgaataaaat gtttcctgca     15720
     cacacaaaaa ttgttcaatc ttatttattt ctaggtgata acgacgggaa acctgacggt     15780
     atcactaacg ctcaaaaggt ctttttcgca gtattcggaa tttcacctac accaaaacct     15840
     gccggcacta atcaaatcgg ttggcccgat agaggattcg aacttagtga ccagggtgca     15900
     tttgtgagga aagactattt tgtaatgtgc acactgaaat attggtatac cgaaatcccg     15960
     aaaattttga aaaggaactt taagatcata aagaaatgca attatgagaa acaagctatc     16020
     atacaagcca aaaacaatgt tcatattccc acatttgatt ttaccggcgt attaatggtt     16080
     tctaagcact acatggatta ataaaaacac gaaattgttt aaaaaacaga ggaacaaaat     16140
     gtctgcaccg tgtttttatt cgagcgcata tattgacatc gcatcgtaat ttatagaaat     16200
     aaaacaatat gaatttggcc acccgtggcc cattttccca gcggcccgca agggccgctg     16260
     ggaaaatgga ccasgggtgg ccaaattcac agcagca                              16297
//
ID   Polinton-1_HSal repbase;    DNA;    INV; 3554 BP.
XX
AC   .
XX
DT   24-OCT-2011 (Rel. 19.04, Created)
DT   24-OCT-2011 (Rel. 19.04, Last updated, Version 2)
XX
DE   Polinton-type DNA transposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3554
RA   Jurka J.;
RT   "DNA transposons from the Harpegnathos saltator genome.";
RL   Repbase Reports 14(4), 1008-1008 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. Incomplete sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           227..3553
FT                 /product="Polinton-1_HSal_1p"
FT                 /translation="MFVAGKNIFTLRYVFARGAPPMYDGSSVLTSHGREAK
FT                 MTLNIMYYEKSRHYNPILNLRAASGSQGYCVRCNSGYKPERGHRCSNACPR
FT                 CHGVPACEVSGVELIRCAACQREFYGSVCFERHRAQKSLQGTSSLSICNIL
FT                 RVCSDCGRLRNLRNKHNCNEIFCRVCNALQPMNHLCYMKPLRCDTGSSDTM
FT                 NPQRVGNENVVDDIDEATETSKRVKGRIAFVFYDFETRQDDTIEGTENVKT
FT                 HVVTLCVAQQICESCMNVDDMALRCRWCGIREFIFRDNPVKQFVDFVTRPR
FT                 KSFKQIICIAHNASAFDAQFILRYLVESGNRVEPKLILNGTKIILLTVGQT
FT                 KFIDSVNYMPMRLSALPKAFGLKDTAGKGLFPHLFNTVENQHYIGPIPDAR
FT                 YYSPETMRPPERERFLEWHEDMVRKNIEFDFQREIVSYCRNDVDILRRACL
FT                 AFRKIFLDRGKVCPFEECTTIASTCMRVFRKNFLREKEIGIIPSGGYRRVN
FT                 NQSRKALKWLLWMERELGHTITHAGRSREHRIPEGLLVDGYYETTNPAQRH
FT                 VLQFHGCFWHGCPACFRVNRDSPLSTTVKGDTIESRYEHTRVTTSRLQKLG
FT                 YIVTEKWECVFDRELQDNQPMRDFLANHSMLETEPLDPREAFFGGRTGNIV
FT                 TRCDVTGTEKIRYVDVCSLYPFVLKTGSFPLGHPDVYVGEECSALIGIAPD
FT                 FDFSRVEGIVRCKVLAPRDLFHPVLPFRVRGKLLFALCRSCCETFSQSPCT
FT                 HDNPADREFEGTWVSCELRKAIEKGYSVRSVSEIWKYKISQYDPSTRLGGM
FT                 FAGYINCFLQLKQEASGWPAECTDDEEAKERYLREYEKTEGIVLDRNNIAV
FT                 NSGLRSVAKLCLNSFWGKFGQRSNLPNTEVVKTREHFMSLLTSPEHEIINI
FT                 LPVNDEVLYVSWRLRQEALVPSATTNVVIAAYTTAQARLKLYVYLEKLDRR
FT                 VLYYDTDSCIYLSTGDPNEYEPRTGNFLGDMTDELESYGQGSYIESFVSGG
FT                 PKFYAYVVRTPQGKIHEVCKVKGITLNFETSKYINFSSIKNLLVTNKIPID
FT                 ENEEEKKEDARKTSINLRFRAIRRTAFHDIVTRDESKSCVPVLLKRRFDDT
FT                 G"
XX
SQ   Sequence 3554 BP; 956 A; 778 C; 909 G; 911 T; 0 other;
     tgcagatcgg cgtcctcgat tgctcttggc cttccggagc gctccttgtc cgtcgaaatc        60
     gccacttctg aagcgtctaa accaatctcc gccggtaatt tccgatggtg catgttcgcc       120
     gtaggcctcc tcaagcaaac gacgtgcttc agctgcactt ttcttcaagt taaagcagaa       180
     gagcaaagct tcccgcaagt gccgcttatt tggcacaaaa ctcgacatgt tcgttgctgg       240
     aaaaaatatt tttacgttgc gatatgtgtt cgcacgtggt gcgcccccca tgtacgatgg       300
     tagcagcgta ctcacctccc acgggcgcga agctaaaatg actctgaata ttatgtacta       360
     cgaaaaatcc cggcattaca atccaatatt aaatttaaga gctgcatcgg gcagccaagg       420
     ttattgtgta cgttgtaata gcggatataa gccggaaaga gggcatcggt gctcaaacgc       480
     atgtccacgg tgtcacggcg ttccagcgtg cgaggtatca ggcgtagaac taatacgatg       540
     tgccgcgtgt caacgtgaat tttacgggtc ggtgtgtttc gagcgtcatc gtgcgcaaaa       600
     atcgctccaa ggcacttcat ctttgagcat ctgtaatatc ctgagagttt gcagcgactg       660
     tggccgtttg cgaaacttga ggaacaaaca caattgcaat gagatctttt gtcgtgtttg       720
     caacgcgttg caaccaatga atcatctatg ttatatgaaa ccacttcgat gcgacactgg       780
     ttcatccgac acgatgaatc cgcagcgagt aggaaacgaa aacgtagttg atgacattga       840
     cgaagcgaca gaaacaagta agcgcgtaaa aggtcgcatc gcgtttgtat tctatgattt       900
     tgagacgcgt caagacgata cgatcgaagg cacagaaaac gttaaaactc acgttgtgac       960
     gctctgtgtt gcgcagcaga tatgtgaaag ctgcatgaat gtagacgata tggcgttgcg      1020
     atgtcgttgg tgcgggatac gcgaatttat atttcgagac aatccggtga aacaattcgt      1080
     cgattttgtc acgagaccga ggaagagttt caaacagatc atctgcatcg cacacaacgc      1140
     aagcgcattc gatgcgcaat ttatcctacg gtacttggtc gagagcggta atcgggtgga      1200
     acctaagctt attttaaacg gtacgaagat tatattgtta accgttgggc aaacaaaatt      1260
     tatcgacagt gttaattata tgcctatgcg cttgtcagca ttaccaaaag ccttcgggtt      1320
     aaaggatact gcaggcaaag gcctgtttcc gcatttattt aacactgtcg aaaatcaaca      1380
     ttacatcgga ccgataccag atgcaagata ctattctccc gaaacgatga gaccgcctga      1440
     gcgtgagcgg tttttagaat ggcacgagga catggtgcgc aaaaacatag aatttgattt      1500
     ccaacgggaa attgtgagct attgccggaa cgatgtcgat attcttcgac gggcttgtct      1560
     tgcgttccgt aagattttcc tggatcgtgg aaaagtatgt ccgtttgaag aatgcacaac      1620
     catcgcctct acgtgcatga gagtttttcg taaaaacttt ctgcgtgaaa aggagatagg      1680
     tattattcct tcgggtgggt atcggcgtgt caacaatcaa tcccgcaaag cgttgaaatg      1740
     gttgttgtgg atggagcgcg agctcggtca tactataaca catgcaggta gatctcgcga      1800
     acatcgcata ccggaagggc tgctcgtcga tgggtattac gagacaacga atcctgcgca      1860
     aagacacgtg ttgcaatttc acgggtgttt ttggcatgga tgtcccgcgt gtttcagggt      1920
     gaatcgcgat agcccgctct cgaccaccgt gaagggggat actattgagt cgcgatacga      1980
     gcatacacgc gtgacaacat ctcgtctaca gaagctaggt tacatcgtaa cggagaagtg      2040
     ggagtgcgtc ttcgatcggg agttgcagga caatcaaccg atgcgcgatt tccttgcgaa      2100
     tcactcgatg ttagaaactg agcctctcga tcctcgcgaa gcgttcttcg gtggtcgtac      2160
     agggaacatc gtcacccggt gcgatgttac gggtacggag aagatacgtt acgtagacgt      2220
     atgctccttg tacccgtttg tgctaaagac gggctctttt ccgctcggtc acccggacgt      2280
     gtacgtgggc gaagaatgtt ccgccttgat tggtatagct cccgattttg actttagcag      2340
     agtggagggg atcgtgcggt gcaaggtgct cgctccgcgt gatctctttc accctgtact      2400
     cccatttcgc gttcgcggaa aattattgtt cgccctatgc cgtagttgct gcgagacatt      2460
     ttctcaatct ccgtgcacac atgataatcc ggccgatcga gaattcgagg gtacctgggt      2520
     atcctgtgaa ttacggaagg ctatagagaa gggctatagt gtcaggtccg tgagcgagat      2580
     atggaaatat aagatttcgc aatacgaccc aagtactcgg ttgggaggta tgttcgcggg      2640
     atatatcaac tgctttctgc aacttaagca ggaggctagc ggatggcctg ctgaatgcac      2700
     cgacgatgaa gaggccaaag agcgatacct gcgggaatac gaaaaaacag agggtattgt      2760
     tctcgataga aacaacatcg cggtaaattc ggggttgcgt tcggttgcaa agctttgcct      2820
     caattcgttc tggggtaaat tcggtcagcg atctaatctg ccgaataccg aggtcgttaa      2880
     gacacgcgaa catttcatgt cgctgctcac gagtcccgag catgaaatca taaacatatt      2940
     gcccgtgaac gatgaggttc tctacgtctc atggcgatta cgacaagagg cgcttgttcc      3000
     ctctgcaact acaaacgtcg taatagcggc ctacacgacg gcacaggcac gcttgaaatt      3060
     gtacgtttat ttagaaaaat tagatcgtag agtgttatat tatgatactg attcatgtat      3120
     atatttgagc accggtgacc ccaatgagta cgagccgcgt acgggtaatt ttttgggcga      3180
     tatgacggac gaactcgaaa gttatggtca aggtagctac atagaatcct ttgtatccgg      3240
     aggcccaaaa ttttatgcct atgtcgttcg cactccacaa ggtaaaatcc atgaagtttg      3300
     caaagtaaag gggataacct tgaacttcga gacttcgaaa tatattaatt ttagtagtat      3360
     aaaaaattta ttagtcacca ataaaatacc tatcgatgag aacgaggaag agaagaagga      3420
     ggatgcgagg aaaacttcga taaatctacg ttttagagcg attcgtcgta cagcgtttca      3480
     cgacattgta acgagagacg agagcaagtc atgcgtgccg gtgctcctaa aacgtagatt      3540
     cgacgacaca ggtc                                                        3554
//
ID   Polinton-1_LMi repbase;    DNA;    INV; 8133 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 19.11, Created)
DT   12-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-8133
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3020-3020 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. 3'-half is not covered.
XX
FH   Key           Location/Qualifiers
FT   CDS           4406..5446
FT                 /product="Polinton-1_LMi_4p"
FT                 /translation="MRDTLPKTMWRSGECGIVNLDVAGGPGTHWVAMLARR
FT                 IQVVYCISTHSETLSLQKNYSNTLQTAEVMFSTISIDTRITILTCVDICVX
FT                 CSFYRIRRRLYKDEHSXHLTSWVLSVMSYTLTLKDRSSVLSANYFPPIDLS
FT                 SGDWSIALTGLETYNSIPNITEANNKLHLEVNGVKETVVIEPGAYDIDELN
FT                 EVLKQLGKGIQLRANTSTLKSEIRTLNATIDFSQKGSIGQLLGFTKGQVLK
FT                 KDSNKFYSSDQTVDILPVSTIRVECNITTNSYLNDRLVHTIYGFFPSVGSG
FT                 YKIIEAPTNAIYLPVTVQTLDYLELRIVDQNNRLVDFRGEEIIVRLHLRQD
FT                 GRKV"
FT   CDS           join(1020..1553,1520..1828)
FT                 /product="Polinton-1_LMi_1p"
FT                 /translation="MTLLTHIDGVYFEHVCVFSKTLSQPKYQLLQEILRGV
FT                 KGVTYTTYSESGDIPPPEQVKPNTVFIFDDVAVENQDQIRRYFCFGRHMGV
FT                 DVFYLSQTYSRIPKQLLRDNANLIIAFKQDNLNLKHIYNAHVGTDMSFTDF
FT                 VKICADCWNHSQYGFLVIDKTRKLNDGRYRRNFQDFLHIVXTELSRFSAYI
FT                 TMHIAHCVXVYAPTWTNSHVCLSIVVIKVYKGRIYACTWILKFQTLERRIE
FT                 KVHTDLKQYAKHLLVLNNQDLNARVDVLDKKCEHFNYKDQ"
FT   CDS           join(1960..2664,2668..3021)
FT                 /product="Polinton-1_LMi_2p"
FT                 /translation="MSTKQKVIQARKAVREKLRLLKLGQLNREQTLRETFK
FT                 PVTDSLKHFKTTSRPEEEEEEDSIANFISNHSNSRIDKIYGVSKVKPYMLG
FT                 SKPIKLTENTIQIGDREFERTPGLLDLIFLKPTKDESKKYTPADLKRYGEI
FT                 LQLTDVHKKTRSQSSLKYKKIIKPLLEGNETDGDGIDIQNKSMDIGQAPEY
FT                 IYYSHPDEVIDRLRLLMASTAAGNTAHSNEIVSIISQLRQQGIIEERRRME
FT                 TVVREIHRPARRTYPRRHVMIKGLDDLWQADLVDMKEYSRVNSGFNYILMI
FT                 IDTYSKFAWALPLKTKTGKNVARVFEQLLQTGTNRCPVNLQTDHGTEFYNV
FT                 YFKRLWIGMV"
FT   CDS           join(2987..3583,3587..4033)
FT                 /product="Polinton-1_LMi_3p"
FT                 /translation="MCISRGYGSVWYNHYSTYTHLKASIVERLNRTIKAQM
FT                 WMRFNLRGSHNRTVHSTIKMRPIDVRDNELLKTVYFRIKMLDPRKQKFNVG
FT                 DLVRISKYKTTFEKSYLPNWSTEIFTVTKVQRTNPRTYILKDSKGEEIAGS
FT                 FYTEELQKSSEPDVFLVEKVIRRRGSRALVKWLGFPSSDNSWIAIDDLLYN
FT                 ETHGPHVHQHTMRGRRRVEGAGGLLDKLPVELHIPGYNYCGPGTKLQKRLA
FT                 RGDKGINLLDEACKEHDIAYASNSDRHTADRILADKAKAIRRKDLGIGQRL
FT                 AALAVDKTMRAKIKLGLGFRQVMNAARRALKKKKKRAVYDGMYIDCTACAK
FT                 MLEEP"
FT   CDS           join(5557..6780,6740..7183)
FT                 /product="Polinton-1_LMi_5p"
FT                 /translation="MSLLSITEAPTHDERIIRQEYLSHKPFASTTFNKNDE
FT                 IRIVIQHQDALTQPCRSFLYLDGSFRKKNVNQPVAADVKLTRNALAFLFQE
FT                 IRYELNGVEIDRTRNVGIASTLKTYISAAPTEGNSLENAGWYIDEPTDRST
FT                 ADYLRFTACIPLKLLMGYFEDMHGIIMNAKQELILIRSATDNNSYIQTSEG
FT                 GSEFIINSLTWKMPHISVSDEERLKLLKIMNTGALLPLHFRSWELFEYPML
FT                 PTASRQTWAIKTSVQMETPRFIILAFQTNRRGNLSIDSSVFDNCNLTNARV
FT                 YLNSEFYPYDNLHLQWDKNMYSLAYDMYARFRSSYYDDVEEIDGCSLSPRK
FT                 FKELAPIIVIDCSKQNEVIKSGPIDVRIEFEASANFPQLTAAYALVLHDRI
FT                 INYSPLTSIVQRSVLTIARSLVLYSGQYKKHFIMSSLSIHIVADVQGFQDH
FT                 ERDRFILKDIALIAFTEVIKTFSARIESPRLFKDVKCVKTRKCAMWLTRNY
FT                 HGIHWDEPGIPYKDLLKTLQALTTLNNNLRQRRREDYLAATTLQECCFTRP
FT                 GFLWLSCSP"
XX
SQ   Sequence 8133 BP; 2582 A; 1719 C; 1741 G; 2079 T; 12 other;
     agtagtgggg taacgggggt tctaccccac tgagaatcgc ccgtcgacga tagtgtcatc        60
     gacgccagac gctcggccaa ttgccggacc gcagatcaaa ggatgccgcc acaggatgat       120
     tgacaggtct tcccggaagg acaggatgat acatttaggt ccttttgatt cgctacttgt       180
     ccgaccgcta atcaaaggac gccgccataa gcacgattga caggttgcaa gtaaacaaca       240
     cctccctcgg ccacacacct ggcacgacgc ccccctccac ccctcggcgc cgccgccaga       300
     caggcagcac ctccgacagg tccagacctg tcgacccctc gacatgtctg tactcgcacc       360
     ctctgccaca cacctggccg ccaccgccgc cgctgccgcg acatgtccag tccggcgcca       420
     cccccggcga tcgcgtactt gtgatagagt gcatgcgcga aagaattgtc acggtgaccg       480
     cgtcacctcc gaaccgcaag ccgcctccgc ccggcaatta aaaaatgcct acgcgccgca       540
     cctcgcgcgt cagtcgaaga tgagtggtga cggggagaag aaggttcgtt ttaatacggc       600
     tgctaacgag acgcacttaa tgatcagttg gagatttgca tacacagcag ctcgtaaagg       660
     cgagtggcag caatatgcac tagatcggga gcgcttccac cgacgaatac agcaaatgga       720
     acgtgtctta gcacctgtga ttcagaaacg ctgcatataa gcaaattata tcaccaactt       780
     cttcttcttt gttggtcata ctgaaactga atgaatttat atatagctaa ctgtaggcct       840
     ctacttgact tagtcgataa catgtcgtgg tgggagaaac aacaaaattt cgtagttggt       900
     gactggtctg gtgatgggtt gggagaggat tcccagaaga aaaagaacgg tcattacttc       960
     ctgataatat acgtgcaata attgtaggtc cgtccaactg cggtaaaaca aatattctta      1020
     tgacgttgct cacgcatata gatggagtgt actttgaaca tgtttgtgta ttttctaaaa      1080
     ctctatctca acccaaatat cagttattgc aggagatact acgaggtgta aaaggagtca      1140
     cctatacaac gtacagtgaa agtggtgata tcccccctcc tgagcaagta aaacccaaca      1200
     ccgtattcat atttgacgat gttgcagttg aaaaccaaga ccagattcgt agatatttct      1260
     gtttcgggag gcatatgggc gttgatgtat tttatctaag ccaaacgtat tccagaatcc      1320
     caaaacagtt gctgcgtgat aatgcaaacc tcattatagc attcaaacaa gacaatttga      1380
     atttaaaaca tatttacaac gcccatgtcg gaactgatat gtcattcacc gactttgtaa      1440
     agatctgtgc agactgctgg aatcattcgc agtacgggtt cctmgttata gataaaacaa      1500
     ggaaactgaa tgacggtagg tacmgacgga actttcaaga ttttctgcat atataacgat      1560
     gcatatagct cactgtgtgm cagtstacgc accgacatgg acaaattcgc acgtatgtct      1620
     atcaatcgtc gtgatcaagg tgtacaaagg cagaatttat gcatgtacat ggattctaaa      1680
     attccaaact ctcgagcgtc gaattgagaa agtacataca gatctaaagc agtatgctaa      1740
     gcatctccta gtacttaaca atcaggacct aaatgcacgt gttgatgtac ttgataaaaa      1800
     atgtgagcac tttaactaca aagatcaatg atattgagag cgaaaaaatc gcagcgtctg      1860
     cagttgttat tgagaagaat aataataaga agaagataat aatagcggcc ctatataaga      1920
     gagcatgcga ccccagaagt ctgtttagta cgtgttgaga tgtcgaccaa gcagaaagtc      1980
     atccaagcgc gaaaggccgt tcgcgagaaa ttgagactgt taaagttggg gcagctgaac      2040
     cgcgaacaaa cattaagaga aacgttcaaa cctgttactg attccctcaa gcatttcaaa      2100
     acgacttcac gtccagaaga agaagaagaa gaagactcaa tcgcgaattt catcagcaat      2160
     catagcaatt ctagaataga caaaatatac ggtgttagca aagtaaaacc atatatgcta      2220
     ggctcaaagc ctataaaatt aaccgagaac acaattcaga ttggtgacag agagtttgaa      2280
     agaacccccg gtctattgga tcttattttc ctaaaaccta ctaaagatga aagcaagaaa      2340
     tacacacctg cagatctgaa gcgctatggg gaaatattgc aattgactga tgtgcataag      2400
     aagacgcgaa gccaaagcag cttgaaatac aagaagatta taaaacctct gctagagggg      2460
     aatgaaactg atggtgatgg tatagacatt caaaataaaa gtatggatat cgggcaagcc      2520
     ccagagtata tatattacag tcatccagat gaagtaatag acagactacg tctgctaatg      2580
     gcatcaacag ctgctggtaa tacagctcac tcgaatgaga ttgtttccat aatttcacaa      2640
     cttagacaac aaggcatcat cgaataagaa agaagaagaa tggagacagt ggtccgtgaa      2700
     atccatagac cagcacgtag aacgtatcct cgtagacatg ttatgattaa aggcttggat      2760
     gacttatggc aagctgacct ggtggatatg aaagagtatt ctagagtgaa tagcggtttc      2820
     aactatattt taatgatcat cgacacatac tcgaaatttg catgggcatt accgctgaaa      2880
     accaaaacag gaaagaacgt tgcacgagtg tttgagcaac tactgcagac gggtacgaat      2940
     cgatgtcctg tcaaccttca aacagatcac gggactgagt tttataatgt gtatttcaag      3000
     aggttatgga tcggtatggt ataaccacta ctcaacatac actcacctga aagcaagcat      3060
     cgtggaacga ctgaacagga ccataaaagc tcaaatgtgg atgcgtttca atctccgcgg      3120
     ctcgcataac agaacagtac acagcactat aaaaatgaga cccattgatg ttcgagataa      3180
     cgaactccta aaaacagtct acttcagaat taagatgcta gacccacgaa agcaaaagtt      3240
     taatgtgggg gacttggtgc gcatatcaaa gtacaagact acttttgaga aatcatacct      3300
     cccaaactgg tcaacagaga tatttacagt caccaaggtt caaagaacga atcccaggac      3360
     atatatctta aaggacagca aaggggaaga aatcgctgga agtttctata cggaggaact      3420
     gcagaagagc tcagaacctg atgtgtttct cgtggagaag gttataagac gccgtgggag      3480
     tagagctcta gttaaatggc tcggattccc ctcttctgac aatagttgga ttgccatcga      3540
     cgatttgcta tataatgaga cgcatggacc gcatgtacat cagtagcata ccatgcgcgg      3600
     taggagacgt gtcgaaggag cgggaggtct tctcgacaag ctaccagtcg agcttcacat      3660
     tcccggatat aactactgtg gacctggaac aaagcttcaa aaacgtctag cacgaggtga      3720
     taaggggatt aacctgctcg acgaagcctg caaagaacac gacatcgcat acgcgtcgaa      3780
     tagcgatcgt cacactgccg atcgaatttt agctgataaa gctaaagcaa tacggaggaa      3840
     ggatctcggc attggtcaac gtcttgcagc gcttgcagtc gataaaacca tgcgtgctaa      3900
     aattaagctt ggtttggggt tccgtcaagt tatgaatgca gcacgtcgcg cgctaaagaa      3960
     gaagaagaag agagcggtgt atgacgggat gtatattgac tgcactgcat gcgctaaaat      4020
     gcttgaagaa ccgtaatcac aaaggaaaag ttaaaacacc cggttctacc attaccgaag      4080
     acgtcaggtg gaattattcc ttttctaatt ccagctctgg cgggactctc gcgattggtt      4140
     ctctggccgg cggcgcatca gctattgcca gaacgtgaat aatgctaaaa atgccagcag      4200
     cagctagagg aggcgagaag acataaccga atgatggagg cggctgctat aggaaaagga      4260
     ctctacctga aaccgtacaa gaaaggactt ggctctttat aaataaaaaa aaaccgttaa      4320
     ccattctacc tgatagaccc ttactaatac cgatctcctc aagttcgcta aagaaaagtt      4380
     caaattccaa gatttcgagg gtttcatgcg tgatacatta ccgaagacta tgtggagatc      4440
     aggtgaatgc ggtatagtta atttggatgt tgctggtgga cctggaactc attgggtggc      4500
     tatgttggca agaagaatac aagtagtgta ctgtatttcg actcattcgg aaaccttaag      4560
     cctccagaag aactacagca atactttaca aacagccgaa gtcatgtttt ctacaatttc      4620
     catcgatacc aggattacga tacttacctg tgtggacatt tgtgtctsat gttccttcta      4680
     tcgaatacga agaaggctat ataaggatga acattcaama catctcacca gttgggtttt      4740
     gtckgtcatg tcgtacactc tgactttaaa ggatcgttca tctgtgttaa gtgcaaatta      4800
     cttccctcca attgatttaa gcagtggaga ttggagcata gccctgactg gcttggaaac      4860
     ctataactct attccgaata tcacagaagc taataataaa ctgcatctgg aagttaatgg      4920
     tgtaaaagaa actgtggtaa tagaaccwgg tgcatatgat atagatgaac taaatgaagt      4980
     tttaaagcag ctcggaaaag ggattcagct acgtgcaaac accagcactc ttaaatctga      5040
     aataaggact ctgaatgcaa cgatcgactt cagtcagaaa ggttcaatag gacagctact      5100
     aggtttcacc aaggggcaag tcttgaagaa ggactccaat aaattctaca gttccgatca      5160
     gactgtagat atactcccag tcagcactat tcgtgttgag tgtaacatca caacgaactc      5220
     ctacttaaac gacagactgg ttcatacaat ttacggtttc tttccatcag ttggttccgg      5280
     atataagatt attgaggctc ctacaaacgc aatatacctc ccggtgacgg tgcagacact      5340
     ggactacctg gagctgcgca tcgtagacca gaataaccgt cttgtcgact tcagagggga      5400
     ggaaatcatt gtgcggctac atctaaggca ggatgggcgt aaggtttaaa gcctctgcac      5460
     gcacagcgca tagcgtcagt tcaccactga acctcaaagc gataacacgt gtgaactacg      5520
     agttccttaa atcaattggg ctgaaacctc gcaaagatgt cattgctaag tataactgaa      5580
     gctccaactc acgatgagcg gattattcgt caagaatact tatcgcataa accatttgct      5640
     tcaactacat ttaacaaaaa cgatgaaatt aggatcgtca ttcaacacca ggacgctcta      5700
     acccagccgt gtcggagttt cctatacttg gatggatcgt ttaggaagaa aaatgttaat      5760
     caacctgttg cagcagatgt gaagcttaca cgtaatgctc tagcattcct gtttcaagag      5820
     atacgctatg aacttaatgg agttgaaatc gaccgcacaa gaaacgttgg aatagcatcg      5880
     actcttaaaa cctacatctc cgcagctcct actgagggta actcactgga aaatgcagga      5940
     tggtacattg atgagcctac agatcgatca acggctgatt acctgcggtt tacggcgtgc      6000
     atacctctaa aactgttaat gggttacttt gaggacatgc atggaattat catgaatgct      6060
     aaacaggaac ttattctgat acgaagtgcg acggacaaca actcatatat tcaaacaagt      6120
     gaagggggaa gtgagttcat cataaactct ctaacatgga aaatgcctca catcagtgta      6180
     tcagacgagg agcgtttgaa gcttttaaaa ataatgaaca caggtgcttt actgccgcta      6240
     catttccgct catgggaact gtttgagtat cctatgctac ctactgccag tcgacagacc      6300
     tgggctatta aaacctctgt tcaaatggag acacctcgat tcatcatact ggcatttcag      6360
     acaaacagac gagggaatct gtcaattgat tcatccgtat tcgacaactg caacttaact      6420
     aatgcaagag tctacctgaa ttcggaattc tacccttatg acaacttaca tctgcagtgg      6480
     gacaaaaata tgtacagcct agcatatgac atgtacgcaa ggttccgatc tagttactat      6540
     gacgatgtcg aagaaataga tgggtgttcc ctcagtccac gaaaattcaa ggaactggca      6600
     cctataatcg taattgactg ttccaagcag aatgaagtaa ttaaatctgg acctatagat      6660
     gtgaggattg aatttgaagc ttcggcaaat ttcccacaac tgactgctgc atatgcctta      6720
     gtcctgcatg atcggataat taactatagc ccgctcacta gtattgtaca gcggtcagta      6780
     taaaaaacac ttcatcatga gctctctaag tatacacatc gttgctgacg tacaaggctt      6840
     ccaagaccat gagcgcgatc gtttcatact gaaagacatc gcactcatag cattcaccga      6900
     agtgataaaa acgttctctg caagaattga atcaccaaga ctattcaagg atgtgaagtg      6960
     tgttaagacc aggaagtgcg ctatgtggtt aactcgtaac taccatggaa ttcactggga      7020
     cgagcccggc attccctata aagacttact aaagactctc caagctttga caacattaaa      7080
     caataatctt cgtcaaagga gaagagaaga ttacctggct gcgacgactc ttcaagaatg      7140
     ctgttttaca agacctgggt tcctttggct gtcctgctct ccataaactc aagagcaaga      7200
     aaaatagtgt tgtgtgtgca aatgataatg tacatatgct tgtatgttgg ttaaagaatg      7260
     aaaataaatt aaattttacc taagaaacct ttgtgttgtt atttaactac tcccctacct      7320
     caccttagtt ttaagagcta tactttgtat gtttaaatgc agctcgactt atagacgact      7380
     gcgtgcaatg cagatgtttc tgcctattgt acaaaaaata ttgtgtaaat gcatctctcc      7440
     ttatagaaga gtgcgtgcaa tgcagatgtt actgcttact gtacacaaaa aacatctctt      7500
     tctctccata tttttgaaga gtgaaaaata tatatttaaa aaaagkgggc tgggagaaat      7560
     caaataataa cgccaktatc aattttacwg gtttattgaa taaaaaacaa caatcttatt      7620
     ctttttgaac agtcacagtt ttgtgcagat ttcttaacac tacttgcacg tatgttagag      7680
     catacattta caattttgtg cagattttct tcttaacact acttgcacga tgctagagca      7740
     ttacatttac aattttgtgc ggatttctta aaactacatg cacttgtgcc aaggcattaa      7800
     cagttttgtg catgatttct aaagcagagg tacatcgcaa agcgtttcag ttttcttttt      7860
     ttttccttaa aattacgcat ttctaaagtt aatgtactac tactacaact aatgtgaaat      7920
     tccacccaga cagcacacaa cggttacaca caaatgagct gaagcagctg gatagcttca      7980
     gacgacaata gtacagtaag ctggaatact cgatatgtta cagcaatctg ttccaggtaa      8040
     ttcagtaaac tggagtacga acttttgttg ggtgtttctt aataagttat acattgaact      8100
     ggtkctgcct ttatataatg actagaacaa act                                   8133
//
ID   Polinton-1_NVi repbase;    DNA;    INV; 14499 BP.
XX
AC   .
XX
DT   10-APR-2009 (Rel. 14.04, Created)
DT   10-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-14499
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 791-791 (2009).
XX
DR   [1] (Consensus)
XX
CC   The sequence is incomplete.
XX
FH   Key           Location/Qualifiers
FT   CDS           9202..7967
FT                 /product="Polinton-1_NVi_3p"
FT                 /translation="MTQSLPCDGFKWVEDLNCDFFNVPDDAPVGYILEVDL
FT                 EYPESLHDTHKDLPLCPEHAAPPGSNQEKLLTTLNNKERYVLHYVALKQAL
FT                 KYGLRLKHIHRALQFNQKPWLKPYIDLNSEMRKNAKNEFEKMLFKLFNNAV
FT                 YGKTMENERKRVDVKLVNKWEGRYGCEAYIAQPNFHSCAIFNENLVAVQLA
FT                 RTEISVRKPIYIGLXVLDLSKSLVYRFHYEYMQERVGDKAKLLYTDTDSLI
FT                 YEVSDVDMYAVMKTDLHEFDTSDYPADNQFNIPLVNKKKVGLMKDECNGNI
FT                 MTEFVGLRSKMYSVKVQGQQPIKKAKGVKSSVVKSTIEFDDYIHCLRDKAT
FT                 ITRQQKNIRSRLHVIRTEKEQKIALSPHDDKRYLIPGQTDTLPWGHYMIDG
FT                 YQLIEEDEPSAKRVRLH*"
FT   CDS           join(11951..11481,11477..10179)
FT                 /product="Polinton-1_NVi_4p"
FT                 /translation="KVISENSATFQQNCRTTNCCPTNCRTSFSPLISEKKM
FT                 DLTNEFVDIVKELWRIVKYACDGDLNSSDLQRSIDLTSKAISEVEELIESS
FT                 ALNIYKKKTCQTSCGQLYSIHRLLNNCLLKVGSGLEGVTPSVTWDDTKSAF
FT                 KNNLKTGVITNVKYLDIIFMEDACVLFMLKIEEALLVHKSIKVDTILAAEY
FT                 MIVEENKEIVEVKYFNTKSASIYATSDLKEWFAVNVKQPIERDMEEFQERD
FT                 SGWTLRSILNLTVNMKKFSPMKAASYIELPMAIQKKRACVNVQNQDNECFK
FT                 WAILSALHPVDINAQRVSKYQAYANELNFKDIEFPVSVKQIPKFEKQNDVS
FT                 VNLFILKKKGSVFNVSCHLTASKKDXHVNLLXVQDTYIDXXEEEQQGNLRV
FT                 PRFHXVWIXDLSRLVNLQLSKNSHKKHLCDRCLHYFHDKPKLKAHVVDCLQ
FT                 ANMCKVSLPQEKDSVLEFKNVNNKERVPIVVYADFECILKPVDDNRAYQEH
FT                 EPFSIGCYVQYTYDEFKYISYRRKTEQDEDPAKWFVSQLYMLAEELTNMHK
FT                 NPLPMKDMDQRSFDCATTCHICGGPFNVTDIKIQDHCHLTGQ*"
FT   CDS           join(4241..3441,3487..3182,3186..2761,2768..1485)
FT                 /product="Polinton-1_NVi_1p"
FT                 /translation="MIVYKRRGRGLVNRLINNLPIELHLPGYQYCGPGTKL
FT                 TKRLARGDPGINPLDVACKEHDIVYSQNRENIEARNAADRVLAHKAWQRVV
FT                 SKDSGVKEKAAAFAVTSAMKLKSKFGMGVPFKKIVKAASKSIVPSKCARKV
FT                 ILSALKGARKAVKEAGGKRNIGIPRILPVPSKVGGFLPFLIPIFAGLSATG
FT                 AIAGGAAGIAKAVNDAKSAKQALEESQRHNRKMEDIALGKGLYLKPHKTGL
FT                 GLRLKPGNELRKKKDCRRKITSESSHEKKKIVDVRLPQRALTNIDLLKYAK
FT                 ILKIPYFRGVFMRNALPINGPHYRESAIVNLDDATGPGTHWVAYRKRGSEV
FT                 VYFDSFGDLQPPLELMLYLGVDKIKVKYNYERYQDYDTFNCGHLCLEFLEN
FT                 QKDSIGQLLGFTQRLLSSNVSHSSDLPVSILKVNVLRVERKITTGAYINGK
FT                 KVHTIHEFFPAVPPGYKIIAVXSQVIYLRITVKSIDQLQIRIVDEDGHLVN
FT                 FRGEVITVRLHLKQVSKYNGYRLRSRVYKESKMSKSHQSSANVKNANTAKD
FT                 SVSKKPRLKSWWKITCIFFCCQNGRNSHYEIHAHQPYNVSSYNNSDEIRIS
FT                 VQHQDLCLLPSASSLYVCGRLTKADGTLVKNTKFVNNAVCHMFEEIRYVIW
FT                 VSINPSQSLIIHNAGWLDVEEKENLINSEGYFDISIPLSMFICFTEDYRKV
FT                 VVNVKHEIILTRSRNDLNSVIQTPTKVATATTAAEYENFKIELMKVEWLMP
FT                 YVVLSNQHKIRMLSHIQKGKSIDMSFRSWELYEYPLLPTTPKHVWTVKTSN
FT                 QLEKPRFVILGFQTNRKEAKEINASRFDHCNISNVKLFLNSQYYPYGNLNL
FT                 DIERNQYAMLYDMYANFQHAYYDKSIEPMLKKQHFINYLPLIVIDCSKQNE
FT                 ALKNASVDVRLEFESKDNFPAGTSAYCLIIHDRS*"
FT   CDS           join(4341..5039,5075..6004,6008..6394,6348..7316)
FT                 /product="Polinton-1_NVi_2p"
FT                 /translation="MFKKQSVKLPVVNFDTIAEPEKKNKRHGDLLPDSIRA
FT                 VFCGPSNCGKTNSLLALITHPNGVRFENVYVYSKSLNQSKYKFLKDLLEPL
FT                 NGIQYFAFSENDDVIAPDNALPNSIMIFDDIACEKQNNVRAYYCMGRHKKV
FT                 DCFYLCQSYAQVPKHLVRDNVNLLVVFRQDEMNLKHLYNDHVNSDMSYSQF
FT                 RELCSKCWMDDKHGFLLIDKDSAINNGRYRKGFDTFAINIRHTSINMADIQ
FT                 RQKNILHQLVKAQNAVKRKYSLLKFGKDKFEQSIGETFKPIVDPLEKLVKT
FT                 VEKSEVSKRSRAIKKEVKDEMVKNESSNDSFDDDTIEPYHESDFETAASED
FT                 DDDDLNDTKIRRGVIQEHSNKEVADMYMTMLKHQQDNDKIYGVRKEGSEWM
FT                 LGDSSIVFGDRSIKVKDGRYPKTAGLMELLIAKQPKIYDQSDLQNYRSILE
FT                 ATNAHKKQYLSTQPIRVHNSKKYTNIINPMFSGKSGKGLPRYKIARRDTRM
FT                 DYVYWDDPNELVDRLRLLIAEQSAGNPSHINEIHSIIEELREGGYIYAVSF
FT                 TNIIIKMSVDVFGRNLKKSEGSRGPPGFGFKITTDGQYDMDKKRLCNVGDA
FT                 QNIDEAVSLFQLQMENQKILDLISRQERDLNNLDSLLEAYREQFDLKLLTY
FT                 KLEIDTIKEAVSQITSNIHSANVKRLCHRSQATFILQTFNMQHKKVIVEEL
FT                 HKPARRNYPRRSFDVRGLDETWQADLVEMQPYAKENKSFRYMLTVIDVFSK
FT                 FAWAVPVKKKTGEEVAAAMKSILRQGRVPKNLHTDRGTEFYNTNFQTLMKQ
FT                 YKINLYSTYSNLKASICERFNRTLKNKMWIQFSLQGNYKWLKILPDLITKY
FT                 NDTKHRTIXMKPNEVSTANQSQIFKRFTCESRLPKKPKFKIGDKVRLSKVK
FT                 QVFEKGYTPNWSTEIFTISRVAATNPVTYHLKDYQDNPITGGFYEQELLKA
FT                 KYPDVYLVEKVLKKRGKQVYVKWLGFDSSHNSWIDKTEI*"
XX
SQ   Sequence 14499 BP; 4371 A; 2760 C; 2776 G; 4557 T; 35 other;
     gccgtcatca gcacatgtcg ttatcggcac acgccgtcat cagtacatat cgttatcggc        60
     acatgccgtt tctgatacag gccggtactg gcacactcag atgagagagc ggtaagagag       120
     ctgtgagaga gcggtcgata acgtcatcaa cgctggcgtt gtcgaccgcg agatccccga       180
     tcgatgcgtc tcggtgctgg cggtgacgtc aacggcccga tgttaccttc tgctgttgat       240
     accgacagct tgcttcttta ccgtcatgta tcttctagat gacaaaaaga aaaaagatat       300
     cgttggctat gcaggggatt tgaaccggga accttgcggt cgccggccga gcgtcttacc       360
     gacttacccg ttacgggagt gatgactagt attcaatcaa gttagctcac tacttaaatc       420
     tcttataacc ctctttttca ggcatagaat aagtatttgt ggaaaacttt tgtgaatact       480
     gtttccaatc agaagatttt tccttctttt cctgtttctt atcatttttc gaatcaggaa       540
     gaggcttata acctgcacta ctaggtggtg aacccatgat gtacgaatga gcatgatgtg       600
     gaagttttct cgtatttata agtgatggga gccccaacca tcgctctcac ctgtgaggtt       660
     caaccatgta acttaacctc tccataaata ttttttcact cccactccat ggatgaacct       720
     tgtctctcca attgcttaca ttgctcttgc atgtatttct tcataagtcg tacattgtga       780
     agagcacagc tggctttata ggcgccatta tgatgaggac aaaccgttac gagtttgatc       840
     ttgtctagag gtggatatcc catttccgag atgtcgatta cgttgaattt gaaacgttcc       900
     aaccacttct tcttcaagga tcccattacc attactgcag tagagtcatg caaggcttcc       960
     cgaagaattt taccgatttc tgcatattcg atttctccag atgaccatgg tataccatga      1020
     taatgatatt ccaaccatgt attctcttgc ttatactttt ctgtgagtcg acgccatgga      1080
     aaaggctgtt tgaaaagtag tacaataggt tcgatatcat ctcttagaga aactatagat      1140
     aactccttga ggatgaagtc attgccgggc tgcttaaagc cttgcatgtc cactaagtac      1200
     tccatctcgg aatgactctg actagcagca agcttttctt tatatcatat ccccaccact      1260
     actacttcca tccccaccac aagcagcgca agaaaggagg cttgaatgcg cgcgcatagt      1320
     agtgcaagag tggggatatg aaagcgctct actcaggaga acattggaat gcaagtttca      1380
     aatctctcca tgaattcgat ttttgttatg atacaatgtg tgttattaaa taaatcaaac      1440
     gagttttttt acaacaccat ttgcgcaatt atactgaact atgatcaact acgatcatgt      1500
     ataattaaac aataagcaga ggttcctgcg ggaaaattat ctttggattc aaattccagc      1560
     cgaacatcaa ctgacgcgtt tttcaaagct tcgttctgct ttgaacaatc gatgactata      1620
     agaggtagat agttgatgaa gtgttgcttt ttcagcatag gctcaatact cttgtcatag      1680
     tatgcatgtt gaaagttggc atacatatcg tagagcatag catactgatt gcgttcaata      1740
     tctaaattta gatttccata aggatagtat tgtgaattta agaagagttt aacattactg      1800
     atattgcagt gatcgaaacg actagcatta atttctttcg cttccttcct atttgtttgg      1860
     aagccgagga tcacgaagcg gggcttttct aactgattag atgttttgac tgtccaaaca      1920
     tgtttgggtg tagtgggaag cagtggatat tcgtacagct cccaactacg aaaactcata      1980
     tcgatcgatt tacccttctg aatatgacta agcatccgga ttttatgctg attagataat      2040
     actacatatg gcatgagcca ctcaactttc atcaactcaa tcttgaaatt ctcgtactct      2100
     gctgcagtag ttgcagttgc gaccttcgta ggtgtctgta ttacggaatt cagatcattt      2160
     ctcgatctag tgagaatgat ttcatgcttc acgttaacga ctaccttgcg atagtcttca      2220
     gtaaagcata taaacatact tagaggtata gatatatcaa agtatccttc actatttatc      2280
     aaattctctt tctcctcaac gtcgagccag ccggcattat gtatgattag actttgactg      2340
     ggattaatcg atacccatat tacatatcgt atttcttcaa acatatggca gacggcgttg      2400
     tttacgaact ttgtattttt cacgagagta ccatcagctt tggttagcct accacataca      2460
     taaagcgaac tagctgacgg caaaagacac aagtcttgat gttgcaccga gatacgaatt      2520
     tcatcactat tattgtaaga tgaaacgttg taaggttgat gagcatgaat ctcataatga      2580
     gaatttcttc cattttgaca gcagaagaat atacacgtta ttttccacca actcttaagc      2640
     cgaggctttt tagaaactga atcttttgcc gtgttagcgt tcttaacgtt cgcggacgac      2700
     tgatgacttt tcgacatttt cgattcctta tatacccgcg accgtaaacg atacccatta      2760
     tacttgcttc agatgtaatc tcactgttat tacttcaccg cgaaaattaa ctaagtgtcc      2820
     gtcttcatca actatacgaa tttgaagttg atctatgctt ttcacagtga ttcgaaggta      2880
     aataacttga gaagwaactg caataatctt atagcctggt ggtactgcag ggaagaattc      2940
     atgtattgta tgcactttct taccgtttat ataggcaccg gtagtgatct tacgctcgac      3000
     tcgtagaacg ttgactttga gaatggatac aggtagatca gagctatgag agacgtttga      3060
     tgaaagaagt cgttgtgtga aacctagcaa ttgacctatt gaatcttttt gattctcaag      3120
     raattcaaga catagatgcc cacaattaaa tgtatcatag tcctgatatc tttcatagtt      3180
     atacttttat tttatcaacg cccaaatata gcattaattc tagaggtggt tgaaggtcac      3240
     caaaactatc aaagtacaca acttcgctac ctctctttcg atatgctacc caatgtgtgc      3300
     caggaccggt agcatcatcc aaattaacaa tagcagattc acgataatgt ggtccattga      3360
     taggaagagc attacgcata aagacacctc gaaagtatgg gatttttaag attttagcat      3420
     actttaagag atcaatatta gtgagagctc tctgaggtaa tcttacgtcg acaatctttt      3480
     ttttttctta actcatttcc aggcttaaga cgaagaccga gccctgtttt atgtggtttc      3540
     aaatagagac ctttaccaag agctatatct tccatttttc tattatgcct ctgactttct      3600
     tcaagagcct gttttgctga tttagcatcg ttaacagctt tcgctattcc agcagctcct      3660
     cctgcgatag caccagtcgc acttaaacca gcgaatatag gtataaggaa tggtaagaag      3720
     cctcctactt tcgatggaac tggtagaata cgaggaatac caatgtttcg tttaccacca      3780
     gcctctttga ctgcttttcg agctcctttt aatgctgata gaatgacttt acgagcacat      3840
     ttgctgggaa cgattgattt cgatgcagct tttactatct tcttaaatgg aacacccatt      3900
     ccaaatttag actttaactt catggcactt gtaacagcaa aagcggctgc tttttcctta      3960
     acccccgaat ctttcgagac aactctttgc caagctttat gggcaaggac tctatcagca      4020
     gcgttcctag cttcgatgtt ttctcgattc tgagaataga ctatatcgtg ttccttgcag      4080
     gctacgtcta ggggattaat acctggatcg ccacgagcta atcgtttagt gagtttagta      4140
     cctggtccac agtattgata acctggtaga tgaagttcaa ttggaagatt attgatcaat      4200
     cgattaacaa gacctcgtcc tcgacgtttg taaacgatca tttcacttta aaggttaaac      4260
     aacaactaat atcgagagta taaataccag ctctatttat agtctcacaa cagttgtaat      4320
     gcagacctct ctatacaaac atgttcaaga aacagtctgt taagcttccg gtagtaaact      4380
     ttgatactat tgcagagccg gagaagaaaa ataaacgaca tggtgattta cttccagata      4440
     gtattcgagc agtattttgt ggaccatcaa attgtggtaa aaccaacagt ttgctagctc      4500
     ttataacaca tcctaatgga gtaaggtttg aaaatgttta cgtctactct aaatcactca      4560
     atcagtccaa gtacaaattt ttaaaagatc ttctcgaacc attgaatggt atacaatact      4620
     ttgcattcag tgagaacgat gatgtcatag ctcctgataa tgcacttcca aactctatca      4680
     tgatcttcga tgatatagcc tgcgaaaaac aaaacaatgt tagagcatac tactgtatgg      4740
     ggagacataa gaaagtcgat tgtttctatc tatgtcagtc ttatgcacaa gttccgaaac      4800
     atcttgtaag agataacgtc aatctcttgg tagttttccg acaagatgaa atgaatctca      4860
     aacacttata caacgatcat gtcaactcgg acatgtcgta ttcgcagttt cgagaattat      4920
     gctcaaaatg ttggatggat gacaaacatg gattcttact gattgacaaa gatagtgcta      4980
     ttaacaatgg tagatatcga aagggttttg acacttttgc tataaatata agacacactt      5040
     agtcgacatt cattagtcta tttttgactg ttaaagtatc aacatggctg atattcagag      5100
     acaaaagaat atacttcatc agcttgtgaa agcgcaaaat gctgtaaaac gcaagtatag      5160
     tctgttgaaa tttggaaaag ataaatttga acagtcaata ggagaaactt ttaaacctat      5220
     tgttgatcct ctcgagaaac tagttaagac agttgaaaaa tctgaagtat ctaaacgtag      5280
     tagagcaata aagaaagagg ttaaggatga aatggtcaaa aatgaaagtt ctaatgacag      5340
     ttttgatgat gatacaattg aaccttatca tgaatctgat tttgaaactg cagctagtga      5400
     ggatgatgat gatgatttga atgatacgaa aattcgtagg ggagtaattc aagagcacag      5460
     taacaaagaa gtagctgaca tgtatatgac tatgttgaag catcagcagg ataatgataa      5520
     aatttatgga gttcgaaaag aaggttcaga atggatgtta ggtgactcat caatagtgtt      5580
     tggagatcga agcatcaaag taaaagatgg aagatatcca aaaacagctg gtttgatgga      5640
     attgctcatt gcaaaacaac ccaagattta tgatcaaagt gatttgcaga attatcgaag      5700
     tattctggaa gcgacaaatg ctcataaaaa acaatatttg agcacacaac caattcgtgt      5760
     tcataatagt aaaaaatata ctaacattat caatcctatg tttagtggra aaagtggaaa      5820
     aggattacct cgttataaaa ttgctagaag agatactcga atggattatg tgtactggga      5880
     cgatccaaat gagctagttg atcgtttacg cttacttata gctgaacaat cagctggcaa      5940
     tcctagtcat atcaacgaaa tccactcaat catagaagaa cttcgcgaag gagggtatat      6000
     atactgagct gtttcattta caaacatcat tatcaaaatg agtgtcgacg tgttcggacg      6060
     taatttaaaa aagagtgagg gaagtcgtgg ccctcctggt tttggtttca aaatcacaac      6120
     agatggycaa tacgacatgg ataaaaagag gttatgcaac gtgggagatg cacaaaacat      6180
     agatgaggct gtcagtttgt ttcaacttca aatggaaaac caaaaaattc tagatttaat      6240
     atcccgacaa gaaagagact taaacaattt agattctctt ttggaagcat acagagagca      6300
     atttgattta aaattactta cctacaagct agaaatcgat actataaaag aggctgtgtc      6360
     acagatcaca agcaacattc attctgcaaa cgtttaacat gcaacataaa aaagtaatag      6420
     ttgaagaact tcacaaacca gctcgacgga attatcctcg tcgcagtttt gatgttcgag      6480
     gattagatga gacttggcaa gctgatttag tagagatgca accttatgct aaagaaaata      6540
     agagttttag atatatgtta acagtcatag atgttttctc caagtttgca tgggctgttc      6600
     ctgtgaagaa aaagactgga gaagaagttg cggcagcaat gaagtccata cttcgtcaag      6660
     gtcgagtacc taagaatcta catacggata gaggcacaga gttttataat accaactttc      6720
     aaactctcat gaaacagtat aagatcaatc tgtactcaac gtatagtaat ttaaaagctt      6780
     ctatatgtga acgttttaat cgtacactca agaacaagat gtggattcaa tttagtttgc      6840
     aaggtaatta taagtggttg aaaatyttac ctgatttgat cacaaagtac aatgatacca      6900
     agcatcgaac tattrgaatg aaacccaacg aagtgtctac agcgaatcaa tctcagattt      6960
     tcaaaagatt tacttgtgag agtagattgc cgaagaagcc taagtttaag attggtgata      7020
     aggtacgatt gagtaaagtg aagcaagttt tcgagaaagg ctatacacct aactggtcaa      7080
     ctgagatttt cacaataagt agagttgcag caacgaaccc agttacatat catctgaaag      7140
     actatcaaga taatccaatc acaggtggat tctacgaaca ggagctcttg aaggcgaagt      7200
     atccagatgt ttatcttgta gagaaagtct tgaagaagcg tggaaaacaa gtatacgtta      7260
     aatggttagg gtttgatagt tcacataata gttggattga taagactgaa atataatttt      7320
     ctttttttkt tggaagtgat gagagcccca ccttcgctct cacctgtgag atacaaccat      7380
     agttaactat ctctccatta acttccttta tttattcaaa caattattta caatggttaa      7440
     catttagaca atacaaaatt caatgttatt ttcgcctttt gaggtcaggg acagcttcat      7500
     ctccttggct tgactagaca tactctcaaa ggtctctttg tccttctcca atgcagctga      7560
     tacacgggaa gggaggaaca cctgacattc atcgtctaga gtagccacaa ttctcagtcc      7620
     atatctggtt ttgactggac gtagggatgt caccatatgc ttctgtccgg tctgtagctc      7680
     agacatcttc ttcgtgggaa ggaatcctcc gctggcaatc ttgttgatag cgtccatctt      7740
     tgaggtcttt gctctttagc tcgttgatcg agaatgattt cgagagcgtt gggcttcctt      7800
     aagtatagtc ttccccacca ctactaccag cggtgacggc ggctcacaca tcggattggt      7860
     cggcagggag tctgcgcagt agagctgtga tctgaaacaa aatgtatgat taatataata      7920
     acaattataa ttgttattat attaattata aatgattata acatacctaa tgtaatctga      7980
     ctctcttcgc agatggctca tcttcctcga taagctgata tccatcaatc atgtaatgac      8040
     cccacggtag agtatccgtc tgaccgggga tcaggtatcg cttatcgtca tgtggactca      8100
     gagcgatctt ttgctccttc tcrgtcctga tgacgtggag gcggctgcgg atgttcttct      8160
     gytgtctggt gattgttgcc ttgtctcgaa gacaatggat gtagtcrtca aactcgatrg      8220
     tcgacttgac gactgacgac ttyacaccct ttgccttctt gataggttgc tgkccttgta      8280
     ccttgacsga gtacatcttg ctacggaggc cgacaaactc cgtcatgatg ttgccgttac      8340
     actcatcctt cataagtccg actttcttct tgttgactag agggatgtta aactgattat      8400
     cagcaggata atcagaagtg tcgaactcat gaaggtcagt cttcatcaca gcatacatat      8460
     ctacatcgct gacctcatag atgagactgt ctgtgtcygt gtagagcaac ttagccttgt      8520
     ctcccactcg ctcctgcatg tattcgtagt ggaagcggta aacaaggctc tttgacaagt      8580
     ccaacactgy caatccaatg tagatgggct tgcggacaga gatctcrgtg cgggcaagyt      8640
     gkacagccac gagattctcg ttgaaaatcg cacagctgtg gaagttgggc tgagcaatgt      8700
     atgcctcaca gccrtagcga ccttcccact tgtttaccag cttcacgtcg actctctttc      8760
     gctcattctc catggtctta ccatacactg cgttgttaaa gagtttgaag agcatcttct      8820
     cgaactcatt cttcgcattc tttctcatct cgctgttcaa gtcaatgtat ggcttcaacc      8880
     atggcttctg gttgaattgg agagcacgat ggatatgctt caatcgaaga ccgtacttga      8940
     gagcttgctt gagagcgacg taatgcagga catagcgctc cttgttgttc agagtggtta      9000
     gcaacttctc ttggtttgat cctggtggtg ctgcatgctc tggacagagt ggaaggtcct      9060
     tgtgagtatc gtggagactt tccggatact cgaggtctac ttccaagatg tatcctacag      9120
     gagcatcgtc gggaacattg aagaagtcac aattcaggtc ttccacccac ttaaagccat      9180
     cacatggcag ggattgtgtc attgccctag aaatatagga tttattagta tatcatcatt      9240
     aatataatta tttcaatgtg aacttaccat ccgtataggt tgttgacatc atagtacatc      9300
     aggtactttg actcttcatc ctcatcgtat ccagactcca tgtatcgatt attggccttg      9360
     gcatacctat tacagcattg gctgatacca cctcggatgc cccgctcgac gaagagcagc      9420
     atgtctatat cagttaacag ctggagcttg atgccagtat acttcaacat ggcatcccat      9480
     gtaaatccgg gggtggtata gtaatgagca ggatctagct cataggtatg aagacacttg      9540
     gatctgaagt cttcaaacac gttggcgagg agaagtacgt cagtttttag atagaggtct      9600
     gagtactggc caagagtttt gatgttgaaa gcattccaga ccgtctgagc atgcttgtag      9660
     tcctcgtctg atattccact atcatagagg ctactataga aactctcctt gtctggaagg      9720
     gaggtctcgt tcaagtagtc aaaagatttg atgtgatcgt acgggaacac acctttcctt      9780
     ctaagcaatt caatctgaac atcgctgaac tccttcttga actctttatc gactatttcc      9840
     aacttgtcta aatacgatgc aagtttgtca agtgaagatg gcatgaatcg gaaggagtcg      9900
     ataaacttga agttgatgtc gcttccatca atatgcttgg tgaaagagat gtacttctct      9960
     ttattttgcg gtatgataga gactcgtccc ttgaagttat tggcaagctc ctttatgaac     10020
     aagtgcgaat catatccgct caagttgtgg aatacaactg gaatacttct agagtcctta     10080
     tagttgagat tacaactgtt gtgagccgct ccacgatatc tggaaaaaaa gaatagttat     10140
     tagataaatt gataataatc agaataataa taaacaactt actgtcccgt aaggtgacaa     10200
     tgatcttgaa ttttgatgtc cgtcacgttg aacggtcctc cacagatgtg acaagtcgta     10260
     gcacaatcaa acgatctttg atccatatcc ttcattggca agggattctt gtgcatgttg     10320
     gtgagttctt cagctagcat gtagagttgt gaaacaaacc atttcgcagg atcttcgtct     10380
     tgttctgttt ttcttctgta actgatgtac ttgaattcgt cataagtgta ttgaacatag     10440
     cagccaatgc tgaagggttc atgctcttgg taagctcgat tatcgtcaac aggcttgagt     10500
     atrcattcga agtctgcata cacaactatt ggaactctct ctttgttgtt gacgtttttg     10560
     aattccagca cgctgtcttt ttcttgaggt aacgacactt tgcacatatt tgcttgtaaa     10620
     cagtcgacta cgtgagcttt caattttggc ttatcatgaa aatagtgaag acaacgatca     10680
     cagagatgtt ttttatgtga attctttgat aattgtaaat ttactaaacg agacaaatct     10740
     tyaatccata cgyaatggaa tcgtggaact ctcaaatttc cttgttgttc ttcttcctym     10800
     tcatctatat aagtgtcttg cacrarcary aggttcacat gkttatcttt ctttgaagct     10860
     gtcaagtgac atgatacatt aaatacacta cccttcttct tgagtataaa gagatttaca     10920
     gagacgtcat tctgcttctc aaacttcggt atttgcttta cagatactgg gaattcaata     10980
     tctttgaagt tcaactcatt cgcataggct tgatattttg aaactcgctg tgcatttata     11040
     tctacaggat gtaaagctga gagaatggcc catttaaagc attcgttgtc ttgattttga     11100
     acattgacac atgctctttt cttttgtata gccattggta actcgatgta tgaagcagct     11160
     ttcatggggc taaatttttt catattcacc gttaagttga gaatgctcct taaagtccat     11220
     ccagagtctc gttcctggaa ctcttccatg tctcgttcaa tcggctgctt aacgttaact     11280
     gcaaaccact cttttaagtc actagttgcg tagattgaag cagactttgt attgaaatat     11340
     ttcacttcca caatttcttt attttcttcg acaatcatgt actctgcagc gagaattgtg     11400
     tcaactttta tcgacttatg cactagtaac gcttcttcaa ttttcaacat aaagagaaca     11460
     catgcgtctt ccatgaatca gattatgtcc aaatatttca cgtttgttat aacaccagtt     11520
     ttgaggttat ttttgaatgc tgatttagta tcgtcccacg tcacactagg agtaacccct     11580
     tcaagtccac tgccaacttt tagtaagcag ttgttgagta atcgatgaat actataaagt     11640
     tgaccacayg aagtttgaca tgtctttttc ttataaatat ttaaggctga tgactctatc     11700
     aattcttcca cttcactaat agctttagag gttaagtcaa tcgatctttg caagtcgcta     11760
     gagtttaagt ctccatcaca agcatatttt acaatacgcc acaactcttt cactatgtct     11820
     acaaattcgt ttgttaaatc catttttttc tcacttatta atggagaaaa tgatgttcgg     11880
     cagtttgttg ggcagcaatt cgtcgttcga cagttttgtt gaaacgttgc actattttca     11940
     cttatcactt tttaagttgt ccagcagaga ttcgtcgttc agcagcgatt caacgtctga     12000
     cagcgttaca ctttttcaca gcactygtca ctttttacac cttcctttaa cgattcagca     12060
     tccaccagat tgyagttcag cagttaagaa gttcgttgta cactttcgtt cgatgatctc     12120
     ttggcacttt tacacaaaac tttttatata acttgtcact ttttacacag cagctcctta     12180
     ctccacgagt cgatgaacaa taatgatttt ttaaagcatc aattttttct taagtagagg     12240
     tctccccact ataatgcagt agaaaagctg taacgctgat tggttcgtaa gaatgtagaa     12300
     ggggaagcat tgatctgatt gattaagagg taagtggagg gggaagtcgt catctgattg     12360
     gttgacatag ctctcgcaag cagtataaag aggaaccaga tacgttttag taatcatttc     12420
     gtcatggcct acgtagtaga tatccaaggc ttcaagagca cttgcaacga gttcatcttc     12480
     aaagaggtag cgatcgttgc tctcgaggaa gatgcaactc catcagtctt gctctttcga     12540
     ccaccgtact cttggaacac cctaccgaga tggagaaaat gtgagaaccg gtggttagaa     12600
     cacaactatc taggaatatc ctggaatgat ggagagatac cttacgaaga tctagtgcat     12660
     actcttcata atcttctacg aggagctcat aagatctatg tcaaaggtcc ggagaaaaga     12720
     agatggttgg agagactagt acctcatgtc tttgaccttg gtgaaatgag atgtccatct     12780
     ttgaaagagc tgcgaaagaa gagttataca acatgcaaca accacaaact atgtaaaaaa     12840
     ccggtatgtg cagctgaaag cgcatgcgca ctgaagactt gggtacttgg acagaaacca     12900
     aatatatcag aggrtwtttg atgatgaagt agagaatatg taaaaaatca tagatccctg     12960
     gtatatatca gtcgattacg tttcctacat ataccgatag agatgggtaa agagctctgt     13020
     gtctgttttc agcctgaaat cagtgataac gtttcctgca tataccgaca gagcgttcgg     13080
     ggtctctttt catcttgaaa tcaagtatca aatttaaacc agatgtaata tgatcacata     13140
     tgacgatttt ctctatataa ttttgtttaa tttttttatt taaaattaca gcaaaattaa     13200
     tacgctgata taaagttaaa tataaatttt attcaatgtt tatatataca tataattttt     13260
     tattcgggct tattttatat taacacatta tttcaatgta caccatccgt taaatgaaac     13320
     tttgaattat cccgctcgta tgtgaagtgt catggccgat gggtaggata ttcaaagatg     13380
     gctgacgggt ggggtattca aaggtataaa aagacatatt taattttcca attattttat     13440
     taaattttcc agtaataaaa tagcaacgtt tggtatattg tgatataaac aatcacgtac     13500
     tgttttaaaa acaaatagat tttgttgtcg ggtgacctct ccacatattt catacaaaaa     13560
     atctctttat tcataaataa acttattcct tcttgcataa aatgagatgg ttgatcatcc     13620
     tgttccaaaa ttaatgacgt atagaaatca tgcattgtgc caaataccta aaaagtaaat     13680
     ttattattaa tatttgtaaa caataatata ttagttttac actttatatg aaaaacgtct     13740
     gcgaagaacg agttgaaaaa tttacaagtg taatacaggc ttgtgtaagt taaagtagcc     13800
     tggaatttaa cataatctta acctaactta cgtaaaggtc gtattacact tataaatttt     13860
     tcaaatcttt ctacactgac gtttgtcatg ttgagtgtaa acttgtttta ttatgattat     13920
     aaaaaattac cgaagcgact atttccaata aaagtaatct tttctgtata agcggtacgt     13980
     caatttgttt taagaaattg tgtagaattc caaataactc gatgccagtt ttcttgaagt     14040
     ttgttccatc ttcttgagtg tatagcattg ttgcatagaa cgagttattg tcgccataaa     14100
     actcctctcc aacttccaaa aacaacctta tcttaacaca tatatatata tatatatata     14160
     tatatatata tatatatata tatatatata aacgtatatt gatacacgac gtctgtttct     14220
     atataatttt ttaataatca tgtatagtcg atatacataa tcatatatga tcgtctattc     14280
     atacacaaag tttgtatcta tataatttta ataactcata tatggttatg tatactaatt     14340
     tatagtcaaa cataatcata aataatcata catcaattta gttgtagttg attgaagata     14400
     agtacttata tatgattgta aataaaaaat atatatttaa tcgactacaa ataaattgtg     14460
     taaacttatt tatgctcata catgactata ttaaatact                            14499
//
ID   Polinton-1_PBa repbase;    DNA;    INV; 16368 BP.
XX
AC   .
XX
DT   09-MAY-2012 (Rel. 19.03, Created)
DT   09-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-16368
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 642-642 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           4000..2804
FT                 /product="Polinton-1_PBa_1p"
FT                 /translation="MTDILNIEDEPIFDDRIVKIETHAYNPFANTTFGYSD
FT                 EIRIPIQQQDLYTLPYESFLYIEGKLTKNRVVEGSDVVLGNNFVAFLFDEI
FT                 RYELDGVEIDRNRNVGVTSTLKHYVTTSSDRSVILRNAGWDAHTSADGYFN
FT                 FCVPLYALLGFCEDYRRVIINARHELILIRSRNDNNCLMGNSALDPVVDLF
FT                 KIQWRMPHVLLSEIKKLSMLRTLESGRYLSMAFRSWDLYEFPLLQRTTKHS
FT                 WAIKTATQLEKPRYVIFALQAGRKNVMAEDTSRFDDCNLTNVKLYLNSECY
FT                 PYDDMNLDFDKNRWSVLYETYARFCKGYYGYEYLEPSLTVTSFLHNGPFVI
FT                 IDCSRQNESVKSATVDVRLEFETKENVPMNTTAYCLIIHDRVVHYNPLTNV
FT                 VRKIT"
FT   CDS           12355..9842
FT                 /product="Polinton-1_PBa_4p"
FT                 /translation="MNDCAIRLPSEDDKWLEFKNHTNKERLPFIVYADLEC
FT                 VLRRTEPAEREDASYTYQQHEVFSIGYYVRCSYDDALSVYRFRRDEDCVAW
FT                 FVRQLEDLAHQVKILLSANVPMETLSREQWEAYRSATRCHICEKSFASDDT
FT                 RVRDHCHLTGRYRGPAHSNCNLNYKDSYCIPIVFHNLSGYDAHFIITEIAT
FT                 AFEGRIDVLPITKEKYISFTKHVQDTTERSDSRNCVRLRFIDSYKFLNTSL
FT                 DKLASFLTKEKLKILRSEFSTVSNEDFDLLTRKGVFPYEYVDRADKLQDTH
FT                 LPPRESFYSSLTGDTVSENDYAHAANVWQRFSIRTLGEYSDLYLKTDVLLL
FT                 ADVFENFRESCVASYGLDPAHYYTLPGFTWDAMLKHTRVKFELLTDIDMVM
FT                 FIERGIRGGLSQCSGRYAQANNKYMRSYDPSKPSSYLMYFDVNNLYGWAMC
FT                 QPLPYAEFRWMEDIENFDASAIAPDSSTGYILEVDLEYPHHLHDRHTDLPF
FT                 CPTRDKPPGTRQDKLLATLYDKKRYVIHYRNLQQCTRHGLRIAKIYRVLQF
FT                 AQSAWLRDYIELNTHFRTCAKNDFEKNLYKLMNNAVFGKTMENVRNHVDVK
FT                 LLTKWDGRYGAEAMIAKPNFHSRSVFAENLIAVELRKLEVKFNKPIYVGMC
FT                 ILDISKICLYEFHHEYMSPLYREKCKIMYTDTDSLVYHIECDDVYETMKRD
FT                 IARFDTSDYPPDNAYGMPLANKKVPGLMKDENNGAIMTEFVGLRAKMYAVR
FT                 VDGRKDIKKAKGVKNNVVTRTITFDDYTRCLNEEIEMTRRQSCIRSKLHQV
FT                 YTVSESKIALSPYDDKRYIVPDSTETLPWGHWRIPL"
FT   CDS           4947..4195
FT                 /product="Polinton-1_PBa_2p"
FT                 /translation="MSLTLTLSGKSSVLATNYSPAIDLSDDDYELGLTILE
FT                 TYHTIPNVNASNNTFYFGKDDAEITIPEGSYELHAINEFLKREILRKRPRR
FT                 DAPEGNAGDTARGDDEIGEYPIVLRANYNTMRCEIKCAYRINFNKPHNIGS
FT                 LLGFSRRILQPRRWHESDVSINIMNVNIIRVECNVTAGAYSNDKSVHTIHE
FT                 FSPSVPPGYKISERPMQIIYLPVIVRSITELTIRIVDQNGRLLDFRGEEIT
FT                 VRLHVRRRQR"
FT   CDS           join(6379..7074,7087..8259,8263..9309)
FT                 /product="Polinton-1_PBa_3p"
FT                 /translation="MKFVRQPLTIRVANCDERARMMGDIATERKHGEMLPS
FT                 TIRAIICGPSNCGKTNVLISLLESPHGVRFENVYVYSKSLQQPKYRYLENL
FT                 LTSIEEIGYFTFSNNSDVIPPSEARPNSIFVFDDVACDKQDAVREYFSMGR
FT                 HSNVDCFYLCQTYARIPKHLIRDNANLLILFKQDGTNLKHVYNDHVNTDMS
FT                 YDEFCALCRDCWQREYGFLVIDKDSPLINGRYRKEFNTFAVPSMSIRQAGN
FT                 MDNTKDREKIAKQIAKTSDSIRKKYRALKIGKIAEDTALEKRFKPIVEPLK
FT                 QIVEKTEESQSIEREAKDLGIKKKQKREDSDDDNDNDITTTTDKDSYWTDV
FT                 GWLKLTPQSKKRRTTKELKAASDSLVFESTPIQPSKDPPKEPPLFLQKEDV
FT                 FETKDVSEPSFETTIKQSLQTQQGREALHNQLGPLGQKYVSPLLDDNGKND
FT                 TFDRVYGVYFDKNSGAMLGDKKFDVDKNDSIIIDNVRYNGTPGLYELIFKR
FT                 LPDDAVFTEDDKQTYKSILLTTNAHRRGHSAHNPIKGNRGSKYINIIAPLV
FT                 STYGSSGRKKGAGVSNIPTAMKLNDNKIDYVHWDDPNELVDRLRLLDASHR
FT                 AGNNAHDNEMLSIIEELREAGIIINSRIDETSQSINVSEEKNNFKLYILFT
FT                 IKHRRNMRSDGREKNVSSERRRLVEELHAPARRNFPRRRVIIRGYDDLWQA
FT                 DIVEMRPYSSFNRGHHYILTVIDALSKYAWAVPLKSKVGSETANAIAKIIR
FT                 ESGRCPRNLQTDMGKEFYNADVQKLLKKHNVNHYSTYTVLKASIVERFNRT
FT                 LKNDMWKMFTLNGTYKWVDALPRLVSDYNARKHRTIGMRPVDVTPAIAKRL
FT                 LDTVYSAIKIAGPAKFKVGESVRVSKYKTIFEKGYTPNWTTEVFKIVKVQR
FT                 TNPVTYLLEDYRGKSVAGAFYEHELHRATHPDVYLVEKVLRRKGDKVYVKW
FT                 LGFDRSHNSWINKSSVI"
FT   CDS           join(15006..15275,15208..15840)
FT                 /product="Polinton-1_PBa_6p"
FT                 /translation="MKFLEKRGKGGVNGLPCQKIYAISPPPSNDLHDKKGT
FT                 PLLHHSNNTQCIPPKEAAHRTMAKNKRRNVTRKFQLHFFIFFSFFQYCAIL
FT                 YIRVSFNCIFLFFSLFSNIVQYYIFNFHSISVERRAVRLLSRRYTLTATGY
FT                 KFLEIGINVGPPSYVEIALGDHRGQELILSLETWKGLYEQRWNIYKLLRND
FT                 YKDNFISVGPLTVRICLMNDVTLVRLESLNVRVTMIESTLRRMFALNECID
FT                 VTFDRLVRFVDTIDTKYTRFSNIASVVTDPEEVPNAIRDCDIFDRRQLVDC
FT                 ELLALVFSV"
FT   CDS           join(14078..13659,13687..13289,13361..12492)
FT                 /product="Polinton-1_PBa_5p"
FT                 /translation="MERSLEELTSSPLWDSISHLPVNVAVYFIKRHYTPTP
FT                 HFPIPRPRVKGRYNSTLCFSAPSERAEIILEACTYYHYRGHAYNILLPLSR
FT                 QKVAEIIPRSEDNHIWLFYSHQSPDMSEIQRFIYWLRVKAAIEKRKKESKK
FT                 MRKEKKKVKKCKIVLMRQHNNLKESRFCNMEHLERVERELLEQCSQVATLV
FT                 ECFAWLQRCEECIEQLEELSRVKRPRLTVANRQSAVARIARLAGAKVQLER
FT                 RFVHVGGEYASTVETMDLSFGEKSIRHLKAVYVREHSRDNGSLVWREIDTA
FT                 FESRILTGAVINVDYIEPRQFLEDAGGVVLERVRDIVQRHDSVKVNTAFNG
FT                 EFVTGDKRANKSINTKNSELFRVSNLDEWYEQYVIEPTLASLEEFQERDSG
FT                 WALSRILNLTVNVNKYNPMHAGCYIELPREIMLKRAVINVRSKDNACFAWS
FT                 VVAALHPAERNTNRELSYPHYTVLNLQDITFPMTLNQIKKFEHLNDISINV
FT                 YGIKEKEILPIRLTSRKMEKHANLLYVQDPRDDNAGHFAYIKDLSRLVSSQ
FT                 LSKXGHKKYFCDRYVF"
XX
SQ   Sequence 16368 BP; 4475 A; 3803 C; 3563 G; 4525 T; 2 other;
     tagtaatata gggccggttc taactcagaa gcgttgaggg gggtgcgggt gtgcgggggg        60
     aacggcgcgc aaccgaggag ctccggggag gggggagagg gggacggcgc gtgttgggcg       120
     acccagtgcc attgaacgta aacagcgtgc gattgaatcg acgattgatg ccttcagcac       180
     cgtgataaat aattacgaaa agataaataa cgaagatgat ataaaaaatt ggacaggcgc       240
     gtggacatga cgtcagaggg gggggggggc cgccgcccgc cgccgccgcc gccgccgccg       300
     ccgccaccgc cgcgcccgcc gccaccgccg ccgagtaaaa aataaaaaga aaaaaattaa       360
     aaaaagactc accaggttga ggtagaaagt cacttaaaaa aagtcactta aaaagtacaa       420
     aaaagaaatg tccaagaaaa aaaatgtcac gtaaaaaaat acacacaaaa aaatgtttaa       480
     caaatccaag aaaaaaaagc actcagtcac tttaacaaaa tacacacaaa aaagaaaaat       540
     gttaataatc catgaaataa ttttactccc tccggattac tcgcaggagg gggacttcat       600
     ccacataccg cgggattaac ccgcgggggg gacttctaaa taattgtcct cctcctcttc       660
     ctcctcttcc tcctcttcct gtgccgaagc caatgaacga atatattcgt acaagggtat       720
     tgaccatggc agttgcgcaa caccaacgag agggttgttg tcaatgtaat aaataagttg       780
     ttcctccaca tataccacaa agttaccacg gtactctgcc ccgttgaatc ttgcgcagat       840
     aatgacgcgt ggtaatgcca ttgcgaagac gttgcactca aagttcttca cgcaaaaagc       900
     aattgttttt cgcgcaccag tgattcttcg cgcacaaaaa ttattatcga ggccacgaag       960
     acgtttcaac gatatgcctc cacaagactc attgcatgag actgaacgcg gcgtgtcaag      1020
     agaagcgccg atactccggc tgctataaac aaatcgggga gacctatgat gatgatgatg      1080
     ttccgattta gacaaagaaa ttgtcgatga tatataatgg gtcatggggt gtgcaggatc      1140
     acagtagatg gaagtctaat gtgagagaga gagaaaagct gacgtgcata caaaaaaaaa      1200
     acgcaaaagt atcgcgtagt gtctaacgtt caacgagaag aaatggcaag tgaaaagaca      1260
     tcgcaggaat ttgattattt ggcgtatatt agagatttat taaaaattac ttatccaact      1320
     gaagcagtaa gtatatttat tcacatgtat ctttctaatg tttaaaaata ttattaaact      1380
     caatattgta aaaaatatta aactcaatat ttttgtaatt tgacagacat tatatctcga      1440
     tggtatctca gttgtggaaa ctgtgcaagt acggaatctt ataaaaattc agatacgcca      1500
     cccgaatggg gtacgtaact ttttctcctt tttttctttt tctctctttt gtcttttttc      1560
     ctttatttga tatgtaatgt attgtgtgaa attgagattt ttttattatt ttttgtagta      1620
     tttatgcata tatgatatca aaattaatgg ctttatgaat attaatcatc ggcggtggat      1680
     acggtatcag cgtcgccaac acaaggagta tttatacttt ttatgggaag aaattactcg      1740
     cgaggacgta tttgatttgc agagactctt tggtttacgt ccatatgaag atgatgaaga      1800
     agtgtggtga acattttcta caggatattc tcattacttt gaataattac ataattgaat      1860
     aattacataa gtaataaaga tccacaaatg aatgtatata caataaatat aaagtgcata      1920
     caataaataa aagtgtatga gttattcttt tgcattaaat aaatattaaa aaaatttttc      1980
     acttttttaa atcgtgattc aatttctttg tcatgtccat gaccgacaca ctgacctaca      2040
     ttcctgctcg acgcgcgcga gtcaccccgg caagataaac ttctcggcgt tatatgataa      2100
     gaagcggtac gtcgatcgtt agaattatca acgcatggga aagaaataaa aaacataatt      2160
     cgtatatcat atttatttta ttcatggtta tctgaccacc aattaaataa tttgaataca      2220
     ttttgtaatg cgcaattagt atagtgatat ccgcatcgca tagtattatc agcgtccaga      2280
     ttgtttagag aatctacgtc ttcgtaatca gcatccagag tctcgatgta cacgcgctca      2340
     tcgtccagaa gcaaattcca cagccattgt cgtttttcat gtcccttgac atatacgaca      2400
     gcatcgctgt catcgtcgtc gtcgtcgtcg tcgtcgtctt cttccgttcc atgcacagcc      2460
     tttgtaatca aactcttagc tttgctgtat gaaatcgttc cgtcgtccca tcgcagtcta      2520
     tggtgatgac gtatcaccca gcgtgcgcga gacttgtcgg cacttgcgag gaaatgccat      2580
     ggtatagggc ttgcgaaaat gtagtgagag agaacggtcc gttttctgag agcggcaaac      2640
     tcctttacaa caaactgtcc tccaacgaga aaaccttgca ggtctacgaa cgttggcacg      2700
     accatgacga gcaatttttc gagactgcgg tcgatttcga tgtatcgtag attttattgt      2760
     ctctctctct ctctctctct ctcatgtgcc agcgatgctc ttaggtgatc ttgcgtacaa      2820
     cattggtcaa cggattgtag tgaaccacgc gatcgtgtat aatgagacag tacgcggtgg      2880
     tattcatcgg tacgttctcc ttagtctcaa attccaatct cacgtccacg gttgcgctct      2940
     tgaccgattc gttttgtcga gaacaatcga tgattacgaa tggaccgtta tgtagaaaag      3000
     acgtgacggt gagactcggc tcgagatact cgtatccgta gtaacccttg cagaaacgcg      3060
     cgtacgtttc atacaacacg gaccatctgt ttttgtcgaa atcaagattc atatcgtcgt      3120
     acggataaca ttccgagttc agatagagtt tcacgttggt taagttgcag tcgtcgaatc      3180
     ggctcgtgtc ctcagccatg acatttttgc gacctgcttg cagagcgaag atgacgtatc      3240
     gcggcttctc gagctgagta gcggtcttga tggcccacga atgcttggtt gtacgctgta      3300
     acagcggaaa ctcgtacaga tcccacgagc gaaaagccat gctcaagtat cgtccgctct      3360
     ccaaagtgcg cagcatcgat agttttttta tctcgctcaa taacacgtgc ggcattcgcc      3420
     attgtatctt gaataagtcg accacgggat ccaacgccga atttcccatc aggcaattgt      3480
     tgtcgttacg cgatcgtatc aagatcaact cgtgacgagc gttgattatc acgcgtctgt      3540
     aatcctcgca aaatcccaac agtgcgtaga gaggtacgca aaagttaaaa tatccatccg      3600
     cgctagtatg cgcatcccaa ccggcattcc tcagaatcac gcttctgtcg gatgatgtcg      3660
     ttacgtaatg tttgagcgtg ctggttacgc ccacgtttct gttacgatca atctccacac      3720
     catcaagctc gtatcgaatc tcatcgaaca ggaacgcgac aaaattattt cccaacacca      3780
     catcagatcc ctcgacaact ctgttcttcg ttagttttcc ctcgatatat agaaagcttt      3840
     cgtacggcaa tgtgtacaga tcctgttgct gtataggtat tcttatctca tcgctgtacc      3900
     cgaacgtcgt attggcgaac gggttgtacg catgagtctc aatcttgacg atgcgatcgt      3960
     caaagattgg ctcgtcttcg atgtttagga tatcagtcat ttcacaagtt gcgcaccgcg      4020
     aatcctaaag cttgtaaaaa tttaacgttc gacgcgttaa gtttcttcct cttcttgacg      4080
     cagccggatg agcgaatatt gtcgatcgat gttttctttg taaaagatgc gttatctctc      4140
     tgcgtatgct tcgcttcgtt caacacgagc atctcaaatg tcacgctcgc gttatcgctg      4200
     tcgccgtcgt acgtgcaatc tgacggtgat ctcttctcct ctgaaatcga gcaatcgtcc      4260
     gttctggtca acaatgcgta tcgttagctc cgtaatgctc cgtacgatga ctggcaggta      4320
     aatgatctgc atcggccttt ccgatatctt atatcctggc ggcacgctcg gcgaaaattc      4380
     gtgtatcgtg tgcacacttt tgtcgttgct gtatgcgccc gcggtcacgt tgcactctac      4440
     acggataatg tttacgttca ttatgttgat cgacacgtcc gattcgtgcc accttcgcgg      4500
     ttgcagtata cgcctcgaga aacccagcag cgatccaatg ttatgaggct tgttaaagtt      4560
     tattctgtag gcgcatttaa tctcacacct catcgtgttg taatttgcgc ggagcactat      4620
     cgggtattct ccaatctcgt catcgccgcg cgcggtgtca ccagcgttac cctcgggcgc      4680
     gtcgcgtcgc ggacgtttcc gtaaaatctc acgtttcaaa aattcattta tggcatgcag      4740
     ttcatacgac ccctcgggaa tcgtaatttc tgcgtcgtct ttgccaaaat aaaatgtatt      4800
     gttcgaagcg tttacattcg gtatcgtgtg ataagtctcc aaaattgtta gaccaagctc      4860
     gtagtcatcg tcgctcaaat ctatggctgg agagtaattt gtcgcgagaa cgctgctctt      4920
     cccgctcagc gtaagcgtca gcgacatgat ggaaaaagcg ttcgacgaat actgagacgc      4980
     cgcgacattt tgtcggactt tataaattca cgcgcgtcgg ccgttttgga gaagaaacca      5040
     caagcacagc tgtccgcaga cgctctgatc gtacgtctga taggacgttc gattgtactc      5100
     tatcgtagca tcgtctccga aatatcgtat cagttccttg ggcggtcgaa gattaccgaa      5160
     actgtcaaag tacacaacgc gattgtttct ctttgcgtac gctacccaat gagtaccggg      5220
     acccgtcgtg tcgtccagat ttacgatacc attttcgttt cgacgcgcgc cgctaatcgg      5280
     taatgcgtca cgcatgaaaa cacctctaaa gtacggtacg cgcatacgct tcgccagctg      5340
     gtccaattgt acgttggtgg ttacacccgt aggtattttt atcgtctctt tggcgttttt      5400
     tttctttttt cgctgttacg cctcgtccgc ctttgtacgg ggcgagatac agtccccgtc      5460
     cgtatttgta cggagcgaga tacagtccct gtccgcgcgt ttccatcgcg cgacgttgca      5520
     gttcctcgag ttgacgttgc gcgactttcc tgtcgtttac cgctttcgcc acgctggccg      5580
     ctccgccgat taaggacccg agagcgccca aaattggcaa aatcggtaac acaccacctc      5640
     gtttcgccgt tggaagtatt cgtttctttt ttttgccggc ttttttcttc gccttcatac      5700
     ccatgccgat cttggtcttg gctttcatcg ctgcccaaac ggctgcagct gcagctttct      5760
     cgctcagagc cgaatctctc gcgatgacgc gtcctaaggc tttatcggcg agtaccttgt      5820
     ccgccgcgtg tctgtcggtg agatcgttgc tctgagaata cgcaatgtcg tgttcacggc      5880
     acgccgcgtc cagtggattt atgcccgttt cacctctggc taatcgcttt ttcagccgag      5940
     tacccggacc gcaaaactga tagccgggga tatgtagttc gaaaggaagc gcgtttatcg      6000
     ctcgattgag cagacctcca atgtagcctt cgtttgacgc tgctgctggc ataggccaca      6060
     atcctttatc ttcggtgcag gaccgtctat atgatctcga tcccacgatt gattataatg      6120
     ctcgacgcag cgacgatagg tttgaacctc caaatccgcc tttatatact ccggaagctt      6180
     gtcccacacg tgatcgatat aattaccgca cacgcgtaac agtacgacct tcggtatata      6240
     ttgcaactgc tcagcgctca aatcccgaat atcggaggga tgcgacagcg cgagatacat      6300
     ttttgctact gagcgattcg tggtttcgcg cgcctataaa taggcgttcg atcgaagcct      6360
     agataacgca gtgcgaacat gaaatttgta cggcagccgc tgacgatacg cgtcgcgaac      6420
     tgtgacgaga gagcgcgaat gatgggagac atcgcgacgg agcgcaagca cggtgaaatg      6480
     ttaccgagta ctatacgcgc catcatttgc gggccgtcga attgtggtaa aaccaacgtt      6540
     ctcataagct tgctcgagag tccgcacggt gtacgtttcg agaacgtgta cgtatactcg      6600
     aaatcgctgc aacaaccgaa atatcgatac ttggaaaatt tactaacatc gatagaagaa      6660
     atcggctact ttacgttctc caacaacagt gacgtcattc caccgagcga ggcacgtccc      6720
     aattcgatct tcgtcttcga cgacgttgcg tgcgataagc aagatgctgt gagagaatac      6780
     ttttcgatgg gccgccactc gaacgtcgat tgcttctatc tctgtcagac gtacgcgagg      6840
     atacctaaac atctgatacg cgacaatgcg aacctgctga ttctgttcaa acaggatggt      6900
     accaacttga aacatgttta caacgatcac gtgaataccg acatgtcata cgatgaattc      6960
     tgtgcgttat gccgcgattg ttggcagcgc gagtatggat ttctagtgat agataaggac      7020
     agtccgctta tcaatgggcg atacagaaag gaatttaata cgttcgcggt accgtaacgt      7080
     ggttaatcga tgtcgatacg tcaagcaggc aacatggata acaccaaaga tcgcgagaaa      7140
     atagcgaaac agattgcgaa aacgagcgat tcgattcgca aaaaatatcg cgctttaaaa      7200
     attggtaaaa tagctgaaga tacagcgttg gagaaacgct tcaagcccat cgtcgaacct      7260
     ctaaaacaga ttgttgaaaa aaccgaggaa tctcaatcga ttgaaagaga agcaaaggat      7320
     ctcggtatta agaaaaaaca aaaacgtgaa gacagcgatg acgacaacga taacgatatt      7380
     actactacta ctgacaagga ttcatattgg acggatgttg gatggttgaa attaacgccg      7440
     cagtctaaaa aacgacgtac aacgaaagaa ttgaaagccg cgtcagattc actcgtgttc      7500
     gagtctacac cgatacaacc atcgaaagac ccaccgaaag aaccaccgct gttcctgcaa      7560
     aaggaagatg ttttcgaaac aaaagacgtc agtgaaccgt cattcgaaac aaccatcaaa      7620
     cagagtctgc aaacgcaaca aggtcgagag gcgttgcata atcagctggg accattaggg      7680
     caaaagtacg taagccctct cctcgatgat aatggaaaaa acgatacatt tgatcgcgta      7740
     tacggtgttt atttcgataa aaacagtggt gcgatgcttg gtgacaagaa atttgacgtt      7800
     gacaaaaatg actccataat catagacaat gtgagataca atggtacacc aggattgtac      7860
     gaattgatct tcaagagact tcccgatgac gcggttttta ccgaggatga caaacaaacg      7920
     tataaaagta tattgttaac aacaaatgct catagacgtg gtcacagcgc ccataatccc      7980
     atcaagggca ataggggatc caagtatatt aacatcatcg ctccgctcgt atctacgtat      8040
     ggaagtagcg ggcgtaaaaa gggtgcaggc gtgagcaata taccaaccgc catgaagtta      8100
     aacgacaaca agatcgatta cgtgcattgg gacgatccca acgaactggt ggatcgactc      8160
     cgattgctcg acgcttcgca ccgagctggt aacaacgctc acgacaacga gatgctgtcg      8220
     atcatcgagg aacttcgcga agccggcatt attataaatt aatcgcgtat cgacgaaacg      8280
     agccagtcga ttaacgtcag tgaggaaaaa aacaatttta aattgtatat cttatttact      8340
     attaaacatc gtcgaaacat gcgatccgat ggacgtgaaa aaaatgttag ctccgagagg      8400
     cgacgactcg ttgaggaatt gcacgctccg gcgaggagaa attttccgcg aagacgtgtc      8460
     ataattcggg gatacgacga tctgtggcag gctgacatcg tcgagatgcg tccgtactcg      8520
     agtttcaaca gaggtcatca ctacatactc accgtcatcg atgcgttgag caagtacgcc      8580
     tgggccgtac cgctcaagag caaggtcgga agcgagacgg ctaacgctat cgctaagata      8640
     attcgagaga gcggaagatg cccgagaaac ttgcaaacgg atatgggaaa ggaattttac      8700
     aatgccgatg tgcaaaaact cttgaaaaaa cacaacgtta atcattattc cacgtatacg      8760
     gtgttgaagg catcgatcgt cgagcgattc aatcgcacgc ttaagaacga catgtggaag      8820
     atgtttacgc tcaacggcac ttacaagtgg gtcgacgcgc taccgcgtct cgtgtcagat      8880
     tacaacgcgc gcaagcatcg cactatcggc atgcgacccg ttgacgtaac tcccgcgatc      8940
     gccaaaagac tcttggatac ggtatacagc gcgataaaga tcgcaggtcc agcaaaattc      9000
     aaagtaggcg aatcggtacg cgtgagcaag tacaagacaa ttttcgaaaa aggttacacg      9060
     ccaaattgga ccaccgaggt gtttaagatc gttaaagtgc agcgtactaa tcccgtaact      9120
     tatctgctcg aggactatcg cggaaaatcg gtcgcgggcg cgttctacga gcacgaattg      9180
     catcgcgcga ctcatccgga cgtgtatctc gtggagaaag tactacgcag gaagggagac      9240
     aaggtttacg tcaagtggct gggattcgat agatcgcata actcatggat aaacaaaagc      9300
     agtgtgattt aattcatttt tcttattttt ataatgtatt aaaaaaataa atatacactg      9360
     tatacatgta tacaaagagt ttttattatt tttttcttcc attacatttt ttaaactata      9420
     catgtatgca acttacgaga acacatgtaa aactacatgt attataaaca atatatgtat      9480
     taagccgagt atacattaaa taaatcgaag agagaattaa agctaattcc tcagcaagca      9540
     ggatcttggt tgctattata aattatatat aaaataaatt tgaacagcta aattttattg      9600
     taaaaactac atataaaaac tacaaaaaat acatacatct atactacata tataacagta      9660
     tcgtataaaa cagtatcgta taaaactaca agaatacata cgttcataca tacatacata      9720
     tgatacatag gtacgtacat acatacgtgc atatatgcat acatataaac tatataaaaa      9780
     atataaaaat atatgtacat tgtataaaca tgtatatata tatatatata tgtatatatt      9840
     acaatggaat ccgccaatgt ccccacggta acgtctccgt cgaatccggt acgatgtatc      9900
     gtttgtcgtc gtacggactc agagcgattt tcgactcgga caccgtatat acttggtgta      9960
     gcttggatct tatacacgac tggcgacgag tcatttcgat ctcttcattc aagcaccgcg     10020
     tgtaatcgtc gaacgttatt gttcgcgtta cgacgttatt ctttacacct ttcgcctttt     10080
     taatgtcttt tctgccgtcc accctcaccg cgtacatctt cgctctgagt ccgacgaatt     10140
     ccgtcattat cgcaccgtta ttctcatcct tcattagacc gggtactttt ttattcgcga     10200
     gaggcatccc gtacgcgttg tccggcggat aatcgctcgt atcgaatcta gcgatatcgc     10260
     gtttcatcgt ctcgtacaca tcgtcgcact cgatgtggta tacgagactg tccgtgtcgg     10320
     tgtacatgat cttacatttc tcgcgataca gcggtgacat gtattcgtgg tgaaattcgt     10380
     acaagcagat tttcgatatg tcgagtatac acatacccac gtaaatcggc ttgttgaatt     10440
     ttacctcgag tttacgcagt tcgacggcga ttaagttttc cgcaaagacg ctgcggctgt     10500
     ggaaatttgg tttcgcgatc attgcctccg cgccataccg tccgtcccat ttggtcaaaa     10560
     gtttaacgtc gacgtgattg cgcacatttt ccattgtttt accgaatacc gcgttgttca     10620
     ttaatttgta caaatttttc tcgaaatcat ttttcgcgca cgttctaaag tgtgtattga     10680
     gttcgatgta atcgcggagc caggcggatt gagcaaattg tagtacgcga tatatctttg     10740
     cgatacgaag accatggcgc gtacattgct gcaggttgcg ataatggatg acgtaccgct     10800
     tcttatcgta taacgtcgcg agaagtttat cctgccgcgt gccgggtggt ttatcgcgcg     10860
     tcggacagaa aggtaggtca gtgtgtcgat cgtgcaaatg atgcggatac tcgagatcga     10920
     cctcgagaat ataacccgta gacgaatccg gagcgatcgc gctcgcgtca aagttctcaa     10980
     tgtcttccat ccatcgaaat tcggcatagg gcagcggttg acacatcgcc catccgtaca     11040
     gattatttac gtcaaagtac ataaggtatg atgacggttt cgacgggtcg tacgaacgca     11100
     tgtacttgtt attggcctgc gcgtatctgc cggaacattg actgagaccg ccgcgtatac     11160
     cgcgttcgat aaacataacc atatcgatgt cggtgagcaa ctcaaatttt acgcgcgtat     11220
     gtttcaacat ggcgtcccac gtgaaacctg gcaatgtgta gtaatgcgcg ggatcgagtc     11280
     cataactcgc gacgcaactt tcgcggaaat tttcgaaaac gtcggccaat aacaagacat     11340
     cggtcttgag atatagatcg ctgtattcgc cgagcgttcg gatggagaac cgctgccaga     11400
     cgttcgcggc gtgcgcgtaa tcgttctccg acaccgtgtc accggtcaac gagctataga     11460
     acgattcgcg cggtggtagg tgcgtgtcct gcagcttgtc cgcgcgatcc acgtattcgt     11520
     acggaaagac acctttgcgc gtcaacaaat caaaatcttc gtttgagacc gtggaaaatt     11580
     cggaacgtaa aatttttaat ttttctttcg ttagaaaaga tgccaattta tcaaggctgg     11640
     tatttaaaaa cttgtacgaa tctatgaacc gcaagcgtac gcaatttcgc gaatctgatc     11700
     tctcggtggt atcttgaacg tgttttgtaa acgaaatata tttttctttt gttatcggca     11760
     gcacgtcgat cctgccttcg aacgccgtag ctatttccgt gatgataaag tgcgcgtcat     11820
     aaccggataa gttgtgaaat actatgggaa tgcaatatga atctttataa tttagattac     11880
     aatttgagtg cgcgggacca cggtaacgac cggtaagatg gcaatgatcg cgtacccgcg     11940
     tgtcgtccga cgcaaatgat ttctcgcaaa tgtgacaacg cgtcgcgcta cgatatgcct     12000
     cccactgctc tctcgacaac gtttccatgg ggacattcgc ggataacaga atttttactt     12060
     gatgcgccaa atcttcgagt tgccgaacga accacgcaac gcagtcttcg tcgcgacgaa     12120
     atcgatatac cgataacgcg tcgtcgtacg agcatcgcac gtagtatccg atgctaaata     12180
     cctcgtgctg ctggtaggtg tacgatgcgt cttccctctc tgccggttcc gttcgccgta     12240
     gtacgcactc caagtccgcg taaacgatga atggaagtcg ttccttattc gtgtggttct     12300
     tgaattcgag ccacttgtcg tcctcgctcg gcagtcggat ggcgcaatcg ttcatctttt     12360
     cgcagtccgt tgtatgtgac tgcaatcttt cagacgaact gaagtaatgt agacatctgc     12420
     aaacggaaaa tatgattttt taataaacaa ttttataagg aattttataa gagaaataat     12480
     aaaatttgtt aaaatacata ccggtcgcaa aagtatttct tgtgtccktt tttactcagt     12540
     tgcgagctca caagacggga cagatctttg atgtacgcaa agtgccccgc gttgtcgtcg     12600
     cgcggatcct gcacgtacaa tagatttgcg tgcttctcca tcttccttga tgtcagccgt     12660
     atcgggagaa tctccttttc cttgataccg tagacgttga ttgagatgtc gttgagatgt     12720
     tcgaacttct taatttggtt caacgtcatc ggaaacgtaa tgtcttgcaa atttaacacc     12780
     gtataatgcg ggtacgacaa ttcccgattt gtattccttt cagccggatg cagagccgcg     12840
     accaccgacc acgcgaaaca cgcattgtcc ttggatcgta cattgatcac cgctcgcttt     12900
     aacataattt cccgcggtaa ttcgatgtaa catcccgcgt gcattggatt atatttgttc     12960
     acgtttacag tcaaatttag aattcgcgac aacgcccatc cactgtcgcg ttcttggaat     13020
     tcttcgagcg acgccaacgt gggttcgata acgtactgct cgtaccactc gtccaaattt     13080
     gacactcgaa agagttcact atttttagtg tttatacttt tgttcgcgcg tttatcgccc     13140
     gtcacaaact cgccgttaaa tgcagtgttc actttcacac tatcgtgtct ttgtacaatg     13200
     tctcgcactc gctcgagcac tacaccacca gcgtcttcta aaaattgtcg cggctcgata     13260
     tagtccacat tgatcaccgc accagtcaat atacggcttt caaatgccgt atcgatttct     13320
     cgccaaacga gagatccatt gtctctactg tgctcgcgta ctcaccacca acgtgcacga     13380
     aacgtctttc tagttgtact tttgcacccg cgagtcgcgc gatcctcgcc accgcagatt     13440
     gtctatttgc aacggtgagt cgaggacgct taacacggct aagttcctcg agttgttcga     13500
     tgcactcctc acatcgttgc aaccacgcga aacactccac caaggtagcg acttggctgc     13560
     actgctccag cagctcgcgt tccactcgct ctaggtgttc catattgcaa aatcttgatt     13620
     cttttaaatt gttgtgctgt ctcatcaaaa caattttaca tttttttact ttcttttttt     13680
     cttttctcta tagctgcttt aactcgaagc cagtatataa agcgttgtat ttccgacatg     13740
     tccggagatt gatgggaata gaacaaccat atatgattat cctcgcttct tggaattatc     13800
     tctgctactt tttgccgcga gagaggtagt aatatattgt atgcgtgtcc tctataatga     13860
     taatatgtgc acgcttccag aattatttcc gctctctcag aaggagcgga gaagcagaga     13920
     gtcgaattgt agcgtccctt aactcttgga cgaggaatcg ggaaatgggg agttggggta     13980
     tagtgtctct ttataaaata caccgccacg ttcactggta gatgagagat tgaatcccat     14040
     aacggagaac ttgttaattc ttccaatgac ctttccatat tgtttttata tcacatcaca     14100
     ctcttccact tgcatatgcc tcgttcacaa tgttgtcttt tttcaatttg tgcaaattgg     14160
     gcacatgttg catggcatta tcatacagac ggactgttgg caattggagc aaaatcggct     14220
     gtttagcgca ttgagagtat ctatctcgtg cttcctaacg gcatacaata ctccaatgtc     14280
     agtgtccgcc agacgaacca tgcattcggc acacagagtt agtgcaccac ccgttgaata     14340
     ataaaattgt attgaacaat actttttatt attattcaac gcaaggagtt ccgaacgggt     14400
     aacaattttt tctgcataat ccgtaaggtc atcactttga tcacttacgt aattgctatc     14460
     gtcagacaat gcgtgctctt cgtcttcaat atcaatgtca atattgtcaa tattgtcaat     14520
     ctccatttct tcttcatttt caaacacttc gtccactata ttcacaaagt cttcctcatc     14580
     catattaaac acattttcta tatttaacac attatccatt ttcaccgtca actatttttt     14640
     tcacacacat tagacttcca tctactgtga tcctgcacac cccatgaccc attatatatc     14700
     atcgacaatt tctttgtccc tttgtcggag catcatcata ggtctcccca atttgtttat     14760
     agcagccgga gtatcggcgc ttctcttgac acgccgcgac acgtacgccg atttcggcga     14820
     aaaaagccat cataagtctc cccgatttgt ttatagtaac cggagtatcg gcgcttctct     14880
     tgacacgccg cgacacgtac gtcgatttct acgaagagct atcttttcgc gggctcttcc     14940
     tagaaaaaaa tttgaacgtc atcgcgctcc tttgcgaaca tgtcgctaca tgtttgattg     15000
     caacaatgaa attcctagaa aaaaggggga aggggggggt taacggtttg ccatgtcaaa     15060
     aaatttacgc gatcagtcct cctccatcga acgatctgca cgacaaaaaa ggtactccgc     15120
     tcctccatca ttcgaacaac acgcaatgta ttccgccaaa ggaagcagcg caccgtacaa     15180
     tggcgaaaaa caaaagaagg aatgtaacgc gtaagtttca actgcatttt tttatttttt     15240
     tctctttttt ccaatattgt gcaatattat atatttaatt tccacagtat ttcggtggag     15300
     cgtcgcgcgg tgcgcttact gagcagacgt tacactctga cggccacggg ttacaaattt     15360
     ctggaaattg gaatcaacgt tggtccaccg agctacgtgg agatcgctct gggagatcat     15420
     cggggacagg aattgatact gtctctcgaa acgtggaagg gactctacga gcagcgatgg     15480
     aatatctata aattgctgcg aaacgattac aaagacaatt ttataagcgt cggaccgtta     15540
     accgtcagaa tttgtctgat gaacgacgtt acactcgtac gtcttgaatc tttgaacgta     15600
     cgcgtaacga tgatcgaatc gacgttacgt cgaatgtttg ctctgaacga atgtatcgat     15660
     gtgacgttcg atcgactcgt cagattcgtc gatacgatcg ataccaagta tacgcgattc     15720
     tccaacatcg cgtctgttgt aacagatccc gaggaagtgc cgaacgcgat acgcgattgc     15780
     gatatcttcg atagacgtca actcgtcgat tgcgagctgt tagctttagt ttttagtgta     15840
     taagaaaaaa acatgtgaat aaaaaaattt cacacttaaa aatgtattca atttgtttaa     15900
     aaatataaac atatataata tgcaaaaaac atgtatttct ttcatttctt tctcccccac     15960
     cataaaataa ttagaaaaat aacattcgcc ataagagaga gagccgcaac ggaagagata     16020
     atagatatat acgagagaga gatatttatt ttttactcgg cggcggtggc ggcggcggcg     16080
     gcggcggcgg cggcggccgc cccccccccc cctctgacgt catgtccacg cgtccaattt     16140
     tttatatcat cttcgttatt tatcttttcg taattattta tcacggtgct gaaggcatca     16200
     atcgtcgatt caatcgcacg ctgtttacgt tcaatggcac tgggtcgccc aacacgcgcc     16260
     gtccccccct cccccctccc cggagctcct cggttgcgcg ccgttccccc ccgcacaccc     16320
     gcacccccct caacgcttct gagttagaac cggccctata ttmctact                  16368
//
ID   Polinton-1_RPr repbase;    DNA;    INV; 5994 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Polinton DNA transposons: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5994
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3327-3327 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 3'-end is not determined. A few copies in the genome.
XX
SQ   Sequence 5994 BP; 1565 A; 1187 C; 780 G; 1752 T; 710 other;
     agtagagagg atttggcggt tctggcgcac ctaaaataca aaatggcggc catcccaccc        60
     ccctccccca accctacccc cacccctcct tattgaccaa tcatcgattt cgacgagggt       120
     ttaagccacg ccccctaccc ccaccccacc ttattgacca atcatcgaac tcgacgaggg       180
     ctttaggcca cgccccttcc cccaccccac ccttttaatc gaccaatcag cgaattcgat       240
     gacacccttt tacccccact ccttccccca cccttcttaa tcgaccaatc agcgaattcg       300
     acgacacccc tttaccccca ccctagccct actcctatca catgacacct acctttaccc       360
     ccccactccc accacctcta ggtcgtcgta ttcgttggcc tcctaagctc ctcctacaag       420
     atggcgtctc tcctaacagc tgtagtacac aagatggcgg acctcgtacc agctgatgac       480
     cacaagatgg cggacctcat acctccaccc ccctcgccca ttgatagaca ggaggggatt       540
     ttttttttta attattttta cttacctggg attcgatcct acaaccttcg tgctggtaga       600
     cacgtcatct gcaccagtcg gccacagtgg tagtctcgct tactctagtt ttgaatgttc       660
     tcttatgttt taacttggaa ttatttttta aaaaatctaa cccccctcac caagaatttt       720
     tttttttttt atttaaatta cccccactat cacaaaaata ttcaacttaa ataaaaatgg       780
     ataacctcac tttaggtaat agaaaaaatt atttacttac cccctccacc tggactgctt       840
     ccgctgctga tgacgcgacc tacactcact gaaaactaaa cccgaactga cacttggact       900
     gcgatactag cattaacccc ccaccacaat tacgtcacac tctaactagc caatagaatt       960
     gcatcttttt ttccaaatga ttacctctct ggacaggtct ctgtagcaag ccaccccctt      1020
     tcccttccac atcttttatc atacctgtta atttatatat atgccaacat agctgaacat      1080
     gctccaacaa gtctggacat gtagccagct gtttgaacag gcaagtaaaa ataatgatga      1140
     ctcataccat tgtcatatcc tcaacgagca cgaacatgct ccaacaagtc tggacatgta      1200
     gccagctgcc tctttcgctt taaccgtttt tttttttttg ttattatgaa gttaaaagta      1260
     aattgaactt tgaactttca tatatcttat tattatttcc gtttaccaac tatacaaacc      1320
     tgtatgaaca tatcatcggt gtagtctcaa tatgtgtgat tacctgaaca tgctccaaca      1380
     agtccggaca tgtagccagc tgcctcattc gctttaaccg tttttttgtt tccgtttacc      1440
     aactatacaa acctgtatga acatatcgtt gtagtctcaa tatgtgtgat tacctgaaca      1500
     tgctccaaca agtccggaca tgtagccagc tgcctcattc gctttaaccg ttttttgtta      1560
     ttatgaagtt aaaagtaaat tgaactttga acttattaat aaaatataaa taagttttaa      1620
     ttaacttttc tttatttata agtgtataaa gtaaaaataa gaatgaacaa acattaatta      1680
     aaacatttta tttttattta aaggaagtat acaagtaaaa taataacatt tatttcacag      1740
     tataaatttt atttaaattc tatgtcatat cttccattat taaagccttt gtacattatt      1800
     aacagttttt tctttgattg ttggtaatct tccaccattt catcagttat cactgccgca      1860
     aatctgcgtg gaaggaagat cctcgttggg tagtccattg tcgggccaat ataatgtaaa      1920
     tgggcaacga tggcatctcc aaatttagtg ttgattcttt cgaattgctt cacttcgtat      1980
     gagtatccgg ttcttagatc tgataatttg ccaatgcccg cagaccttgt attcacatca      2040
     ttcaaaaagc ttgccaactt agacatctaa aagaagaata ttatatgaaa gtatcacatc      2100
     attatcaaaa tattgtttca ataaaaaaaa gtattattac ttacctttga agtatgaagt      2160
     taacctctcg agctgtgggc aacgaatgac gaattacctt acaagcttca ctactctacc      2220
     gttacggatg tccccccccc cactctatga cgtcacttat agttagccaa tagaattgcg      2280
     tgcttgtctt ccctctctct ctcttgcaag tgtgtctctc tctctaaggt gaatcatacc      2340
     tcccaccttt gatgcaggac tcaacctgtc cgttaacttc atatatgttt cttagaaaaa      2400
     aacaatattt ttgaaactga actttgccct tattagcttt tattgcttta taaataataa      2460
     aactttgaat gtttgtagac ttaaaaactt actttttaaa aaatgttaac acgcttgcac      2520
     aacatgtttg aacaggcaag taaaaaataa tgatgactca taccattgtc atatcctcaa      2580
     cgtgcamaag ctgcagctta gttttttctt cttttttttt aactaaataa attttgtata      2640
     tgcgcccctc ttagttcggc ttccgcctta agcttcctca ccacgtcaag gtggaggtca      2700
     tcgaggaaga ttgttttttt attttttttt atttttttta ttttttttaa ataattttat      2760
     aataataaaa ggaataattg aaaaataaag caataattta acttaataca tttattgaaa      2820
     taaaacttaa aaagatacat atctacagaa aaatataaaa acttaaaaat caacttcaaa      2880
     tacaaataaa atatttaatt tctaattagt acattaaagt gaaataaata agaaatgttt      2940
     tgctatcgaa tcagtttatt ttaatggttg ttggaatttt agctgccttg catcaatcgc      3000
     attcatacat tgtacagaat ctgcacaaat cxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3060
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3120
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      3180
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xagtattgtg tataatacac      3240
     tgatttcctg ctgtttctaa tgaatcaagt tttggacagt cataatcttc taaattaatt      3300
     acacaacaac tgtacagatt ttgcaaaaga aatcttttct tttcataacc cttaacaaac      3360
     acaaatttat aattacaatc aataaacttg aaaatatctc taatcatttc atattcaata      3420
     tccccgtcat tccatttaat tttatgataa taattttcta accaataatt ggttcttcta      3480
     cttttttcac attgtttatg ttggacaggt ggcttgaata tccagtgtct gactgattga      3540
     aaattatagt ctaatagaga aagctcttta acaatataac ctcctacact gtctacaaaa      3600
     cactggaagt cagctatcag cacgcctgtc tgagccatac tgaacactga actagctctt      3660
     caagccttct tataccatac gacgtacaat acctgttaaa ggattatatt ctaccaccct      3720
     gtcgtgaata ataagacaat aggcagtggt gttgggcggg aacatttctt ttgattcaaa      3780
     ttccaatcta acatctaccg ggccacattt gatagattca cactgtttag aacaatctat      3840
     tacaattaag ggtgttttct ctttaaaatt ttgtaaagaa cttagaggat acatttgttc      3900
     tccataatat gacatttgaa aggaagcata catatgatat agaatggcaa aacggttaga      3960
     ggaaaaatct acattcaaat cgccgtatgg gaaagcttta caattaagat aaagttttac      4020
     atttgaaata gaacagtggt caaagtgact agcgttgctt tccacattat tagcacgtcc      4080
     ggtctgaaaa gctagaatga tatatcgggg cttttccatt tgactagatg tctttactga      4140
     ccagatttgc ctctgagtgg ccggcaacaa agggtaatca tagagttccc aacttctaaa      4200
     acttagagca aataccttag cagatttaag atgacgcata agagccaatc tctgatgttc      4260
     gttgactgtt acatagggca gcatccagca aagtttcacc atttcaattt tacacctctc      4320
     caccgcttgt tcttcattca atctgttgaa tttataggca tttccatctt gtctgcttct      4380
     aacaagtatc aattcttgtt taacattaat cacaattttc tggtaatctt cacaaaatcc      4440
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4500
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4560
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4620
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4680
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4740
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4800
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4860
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      4920
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxg atgttcgctc ggcaactgtt      4980
     ctcactggaa tgatgctctt tttctccgca actgtccttt tatcgctctt ctaaagtcta      5040
     accccatctc cgtctagtga tcaaatggcc aacttcagtt gtgagcctct cttttataag      5100
     acatccagca ggaagagtag acaaagctgg ccgcagttgt tagtgccaac tttctgatac      5160
     tgcttcctgt tccatgaaat tcgacttccc tttacatatc ggacaaattc agcaggggga      5220
     ttggcaccac tgctatcgaa gaattgaaca tattctcctc tcttcttgta acaaacccag      5280
     tgagtaccac tgccaacact gctatccaaa ttaaaaatgg ctcgttcatt tttccaaggt      5340
     ttctttggaa attcatcaat catgaatact cctctgaaat gaggaatttt atttgatttc      5400
     gccaacttaa ttagatcaaa attacttaac cgcaggcgag gtagcgtatc cagcattcgt      5460
     ttagcttttc cactcagttt tgaagatttg ccacccattc gtctaggagt ggggatgatt      5520
     ctcttctttt tcttcttatc tttagcacgt ctcatgataa actaaaacgt tgttagttgt      5580
     ttctggcttt atatatgaac atttttaaca ttctcccaac tgttgtgtga attatctaag      5640
     cccaaccatt tcaccaaaat tctatcacct ttccgtttaa taaccttctc cactaggtaa      5700
     ctgtcgggat gtttggccag ctgcagttcc tcgtgataga aacctccagc aatcattgcc      5760
     ccttataatc tttcagatga taggtgatcg gtatggtatt tttcacttca gcaactttaa      5820
     atatttctgt agaccatgaa gggcagtagc ctttagcaaa ttgagcttta tatttggata      5880
     tgcgtacatg atcaccagct ttgaacttgg gaatgctggc gtttttcaaa gttttcttcg      5940
     catatacttc acgtaacagc tgttcttcta tttcttttcc ccgtactgaa gccg            5994
//
ID   Polinton-1_TC repbase;    DNA;    INV; 13486 BP.
XX
AC   .
XX
DT   14-MAR-2006 (Rel. 11.02, Created)
DT   14-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   A family of autonomous Polinton DNA transposons - a consensus
DE   sequence.
XX
KW   Polinton; DNA transposon; Transposable Element;
KW   Interspersed repeat; Maverick; Tlr; Polinton-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-13486
RA   Kapitonov V.V. and Jurka J.;
RT   "Self-synthesizing DNA transposons in eukaryotes.";
RL   Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006).
XX
DR   [1] (Consensus)
XX
CC   This transposon is characterized by ~110-bp terminal inverted
CC   repeats and 6-bp target site duplications. The consensus sequence
CC   was built based on multiple alignment of several copies that are
CC   >90% identical to each other. It encodes a family B DNA
CC   polymerase (POLB-1_TC), retroviral integrase (INT-1_TC), ATPase
CC   (ATP-1_TC), cysteine protease (PRO-1_TC) and additional four
CC   unclassified proteins (PX-1_TC, PW-1_TC, PY-1_TC, and PZ-1_TC),
CC   conserved in Polintons from different species.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..904
FT                 /product="ATP-1_TCp"
FT                 /translation="MDLRFKSPFTAIVAGPTACGKTHFIIRFIKHLSLICD
FT                 TEFERVLWFYDEWQPLYQNNDINNNLQRIEFRQGVPDINEFDGVKATLIIL
FT                 DDLMREANGSVVDIFTKGSHHRNLSVFNITQNLFYQGKGQRDISLNANYIV
FT                 YFKNPRDKAQINFLARQIFPENIKFVQESYKDATMRPHGYLLIDLKQNTPD
FT                 DFRIRTNILPDEEPCYVYIPKKNYKYKSK"
FT   CDS           1810..2877
FT                 /product="INT-1_TCp"
FT                 /translation="TKLNEIKERYFIPRDPLSFSSADKLVKFTNIPKKEII
FT                 KWLEGVESYTLHKQVRRRFPRNSYHVTNIGDLFQADLVDMRNIAKHNRGVN
FT                 YLLTVIDVFSKFAWVKPLYTKTGKEVAAAFEEIFDERVPVNLQTDKGKAFL
FT                 AKNVQKLFKQNDINYYVTNNPDVKAAVVERFNKTLKTKMYKYFTHANSMHY
FT                 IDVLSDFIHSYNNSYHRTIKMTPNEVNPDNVLQVYNNIMSARKKDIKRIVP
FT                 ENVYKVGDHVRITKYKHVFEKGYMSNWSGEIFKITDVIMRQPVVYKISDLM
FT                 GEAIEGVFYHPELQRVTYNPESRFHIEKVLKKRYKRGKCEFLVQWKNYPSK
FT                 FNSWIPCSSLSAI"
FT   CDS           1036..1806
FT                 /product="PZ-1_TCp"
FT                 /translation="MEHARKMIMIDPSELERLHNRKDTQPNTLNELDHEMK
FT                 RIIDMKNIDDNEKWTLYNQVLQKYLKIISRSREPVCLPIIYPKKRNDQIKQ
FT                 SERISLNILGSLPRTLQVKANTLLNIITHKGVARNETGNVIFDGDIIPGSN
FT                 VFDLITDVMKSGGGSSKLSTEPVGWKKFAEILYKINVPRTLIVNPKRLKYI
FT                 NEQSSERKELKEKVKVKQSSLSKFITEKEEEEEEEEEEENQITKKSLRTLS
FT                 RKPRRLRVPWSPYKSN"
FT   CDS           4239..5549
FT                 /product="PY-1_TCp"
FT                 /translation="MSFLHPCSCECAKSELDLFALPPTQTSIESGQWVHYK
FT                 TVSSISENSPLEFVVPGGEDYIDLSQTLLSLCIKISKEDGSNYVAEDNIAP
FT                 VNNILHSMFSQVDVYLNQKLISPPNNTYPYKCYLETLLNYDSGAKNSHLTC
FT                 GLWYTDTAGKMNVIGNENIGYAERFKHTSLSKEIDLIGHLNCDIFNQEKFL
FT                 INGVEIRLKFARSRDSFALMSSNNLNGKIQITDATLMVRRNRINPSVLLAH
FT                 AKALELSTAKYPITRTELKVLTIPQGVQGKSLDNVYLGQLPKRCAVCFVTN
FT                 KAFNGDYTMNPFNFENFGLNYLSLYVDGNQIPSKPLQPVFVGGNRKFVSMY
FT                 HTLFSGTGIHYLNTGNGISRDNYADGYSIAVFDLTPDLSSHNGFSWNLIKN
FT                 GSLRIEVGFTRALTETVNCLVYGEFDSVLEIDKKRNVIVDYSN"
FT   CDS           3803..4234
FT                 /product="PW-1_TCp"
FT                 /translation="MHSCHYHNYYVNQAGSGGVGAIYKGSVYQKGHGFGSF
FT                 LRGLFRTVVPLLKSGIKTIGKETLRTGSNFLGDVVNEVPVKEAFKTRVNES
FT                 VQNLKHKAQDKLDNLVGSGVIKRRRIQSKNHSRFSAQRVKNCNRKSKSVPY
FT                 KDIFG"
FT   CDS           2928..3800
FT                 /product="PX-1_TCp"
FT                 /translation="MNYFPENTTTRFCTQLPKTVQLDGEWCVGLSEIQYPC
FT                 SFLTINNGENIIYCSFQFNVSAIIQKGEKAIDIMFKDPRCFTWIDEQIRSR
FT                 KYKSSKEFMYDFKMRKIKFESDVIITKYKTRIEAGNYETIEAVLDALNSLR
FT                 PLVQDNVEFRLNDGSKKITVTSSSKYLTSISFSPMLSLQLGFEPDTNVLNK
FT                 TSTHPANIILGLPSQLFVYSDIIEPQLLGEIMAKVIRIVVIDSKYYIYGTH
FT                 HTQLFSHPHYVPVLKREFENIEIDIRSSTGEKVPFQFETLCVKLHFKKIA"
FT   CDS           8242..11856
FT                 /product="POLB-1_TCp"
FT                 /translation="MNNESFPQKPLGISFRKFSEISSDVILNVIGAVLQSN
FT                 STFFSNDQLEIRVDRVRLPTGRGFSALDGKCVSFSEFAVAKNSIYVIENIN
FT                 NRCLAYALVVGKEYCDNNFNKNSLKKFSGLKGKIILDKIALKLCQDANVDL
FT                 DSNSGNYTHIQNFQNFLYDYVIVVYNSRDGRSVYFEGAKSHEKKKINLILE
FT                 NNHYNVILSLTGAFSTSYYCDLCHIRYSRPDRHKNCPYICPCCHSQPPCKT
FT                 DSALIKCNDCQRNFRGDICFSNHIRSNVCKKIMKCSKCDKHIWKNKIGKKD
FT                 EHICGVSYCNVCQQNKPIGHLCYMQSNKINKNKFDADNKLALFIFYDFETT
FT                 QDKKFDDKNSTVHEVNLCVMQQACSNCSKFEQLDENETCDNCGLRQNIFFD
FT                 KPVASLLEYIAEKSKIFNVYAIAHNMKGFDGCFILQYVFQNVSRWKPEVIR
FT                 TGTKLITIRCGKSITFLDSLNFIQLPLSKFPEAFKFEESKGFFPHFFNTND
FT                 NFNYIGPIPDKHYYGCDTMKTKERADFLTWHREQLANNYVFNLKDEILKYC
FT                 ILDVNILRKGCLKFRECFLKINNNVDPFLESLTIASACNLVFRRNFLKSET
FT                 IGIIPKNGYRCSDNQSKIAITWLSWLMQTENINISHAGNGREVRLNGSLLV
FT                 DGFCQETNTVFEFYGCWWHGCEKCFFNQTSNLNNKHDALFLRRENTFAIEE
FT                 KIRKLGCNIRTIWECTFRNDIKDNPDLNRFVNEHNLESFTPLNPRDCFFGG
FT                 RTNVCKLYYKCKDNEKIKYYDVCSLYPFINKYGKYPIGHPKKIYVGNDCLN
FT                 IDITTFEGVIKCIVMPPQHLYHPVLPYRYKGKLTFPLCKTCVEISNQYDCG
FT                 HKPEERQFTGTYVADELRKAVELGYVITLLLEAWEYNVVQYNKETNTKGLF
FT                 TDYVNRFLKMKQEYSGWLSWCDSEDKKQLYLTQYFEKEGIVLDAENISENS
FT                 GMRFISKIMLNSFWGKFGQRENPQKTEIIDDARTLFDLLTNHSRITHNLTI
FT                 VNNDVLLANWDSVCEDIIPLKTVNVIIAAYTTAGARLELYKYLEKLDRRVL
FT                 YFDTDSVIFTQKEDEWQPEIGNFLGDLTD*IGTNKNGVDSYISEFVSGGPK
FT                 NYAYRYWVTKERLFKTVCKVKGITLHYKNEKLLN*EKIKEFILNPELGSEL
FT                 ILYDRVIARTQRYEVISKEAKKTYRVNISKRRRLNDELYDTLPFGY"
FT   CDS           6102..6551
FT                 /product="PRO-1_TCp"
FT                 /translation="MNTLQLKRCLEMISRKKKHHVLVSAYNTLPVLITRPS
FT                 MVIINRDPDYMPGSHWMAVYIDKFGFAYFFDSFGNQPPRNIQKFLKRNALI
FT                 WSYNSSQIQDISSTVCGKYCTLFLLNYVLGNSVDDFLKLFNNNFYNNDKLC
FT                 NKMFTEYFMNK"
XX
SQ   Sequence 13486 BP; 4765 A; 2091 C; 2295 G; 4335 T; 0 other;
     agtagtaaat gagtgtaatt agtgatgttt taatgacttt ttaattactc ccttaatcac        60
     cagcgcttaa actttaatga ttttttttaa ttacccctta atcaccagcg ctttcacttt       120
     aatgacatgg gaaaaacaca cacacaaata ttgttctata aatagtacac cattcagcaa       180
     aagttttcat ttttgttttg gtgttaaata atgtaagacg ttagatattt gaataaaagc       240
     aagaaggatg gacttacgat tcaaatcgcc atttacagct attgttgctg gtccaactgc       300
     atgtggaaaa acgcacttta taatacgatt tataaaacat ttgagtttga tctgtgatac       360
     ggagtttgag cgagtgcttt ggttttatga cgaatggcag ccgttgtatc aaaataatga       420
     catcaataat aatctacaaa gaattgaatt tcgtcaaggc gttcctgata taaatgagtt       480
     tgatggtgta aaagcgacat taataatttt ggatgatctg atgagagagg ctaatggtag       540
     tgttgtggat atttttacaa aaggtagtca ccatcgaaac ctcagtgttt tcaacattac       600
     gcaaaatttg ttttaccaag ggaaaggtca gagagatatt tcgttgaatg caaattatat       660
     cgtttatttt aaaaatcctc gtgataaagc tcaaattaat tttttggcta ggcagatttt       720
     tccggaaaat ataaagtttg tgcaagaatc ttacaaggat gccaccatga gacctcacgg       780
     ttatttgttg attgatttaa aacaaaatac tccagacgat ttccgtattc gtacaaatat       840
     tctaccagat gaagaacctt gttatgtgta catccctaag aaaaattata aatataaaag       900
     caagtaactt attcgtcagt agtatatgag atgtcgcgga agttagaaag aaatgccgag       960
     ttactaaaat ttttgcataa aacaacacca gtatatcgga gtgttgggtc atttatttaa      1020
     taaataataa tcgtaatgga acatgcaaga aaaatgataa tgattgatcc atcagagctg      1080
     gaacgtttac ataaccgcaa agacactcaa ccaaacacct taaatgaatt agatcatgaa      1140
     atgaaaagaa tcatagatat gaaaaacatt gatgataatg aaaaatggac tttgtataat      1200
     caagtgcttc aaaaatattt aaaaattata agccgttcgc gggaacccgt ttgtctgccg      1260
     ataatttatc ctaaaaagag aaacgatcaa ataaaacaat ctgaacgaat tagtctaaac      1320
     attttgggtt ccttaccaag aacattacaa gttaaagcga atactttact aaacattata      1380
     actcacaagg gtgttgcaag gaatgaaacc ggtaacgtta ttttcgatgg agacataatt      1440
     cctggttcca atgtatttga tctaatcact gatgttatga aaagtggtgg tggtagtagt      1500
     aagctgagta ccgaacctgt cggatggaaa aaatttgcag aaattttgta taaaataaac      1560
     gttccacgta cacttatagt taatccaaaa cgtttgaaat atataaatga gcaaagttct      1620
     gaaaggaaag agttaaaaga gaaagtaaaa gtaaaacagt cgtcgttgtc aaagttcata      1680
     acagaaaaag aagaagaaga agaagaagaa gaagaagagg aaaatcaaat aacgaagaaa      1740
     tcattgcgaa cattatcaag aaaaccaaga cgcttgagag ttccatggtc gccgtacaaa      1800
     agcaactaga cgaaactgaa tgaaataaag gaaagatatt ttatacctcg tgaccctctt      1860
     agtttttcga gtgctgataa attagttaag tttacaaata tacccaagaa agaaattatt      1920
     aaatggttag aaggtgtgga atcttataca ttacataagc aagttcgtcg tcgatttcct      1980
     agaaatagtt atcacgtaac aaacataggc gatctatttc aagctgattt agtagatatg      2040
     agaaacatcg caaaacataa tcgaggtgta aattaccttt taactgtcat tgatgttttt      2100
     tccaagtttg catgggtcaa acccttatac acaaagactg gtaaggaagt ggctgcagct      2160
     tttgaagaaa tatttgatga gcgtgttccg gttaatcttc aaactgataa gggaaaagca      2220
     tttttagcga aaaatgtcca aaaattgttt aaacaaaatg atataaatta ttatgtaaca      2280
     aataatcctg atgtaaaagc tgctgtggta gaaaggttta ataaaacatt aaaaacgaaa      2340
     atgtataaat atttcacaca cgcaaatagt atgcattata tagacgtgtt atctgatttt      2400
     atacactctt acaataattc ttaccatcgt actattaaaa tgactcctaa tgaagtaaat      2460
     cctgataacg ttttacaagt atacaataat atcatgagtg caagaaagaa ggatattaaa      2520
     agaattgtac ccgaaaatgt gtacaaagtt ggagatcacg tcagaatcac taagtacaaa      2580
     catgtatttg aaaaaggtta catgagtaat tggagtggtg aaatattcaa aataactgac      2640
     gttataatga gacagcccgt tgtgtacaaa atttccgact tgatgggtga agcaatagag      2700
     ggcgtcttct accacccgga attacagcgt gtaacgtaca accccgaaag tagattccat      2760
     attgaaaaag tgttgaaaaa gcgatataaa agagggaaat gtgaatttct agtacagtgg      2820
     aaaaattatc cttcaaagtt taactcgtgg attccgtgca gttctctaag tgcaatatga      2880
     ataattaata caatgatttt tatttgacat tagtatcaaa tagttcaatg aattactttc      2940
     cggaaaacac gacaacgcgt ttttgcacac agcttccaaa aactgttcaa ttggatggtg      3000
     aatggtgtgt tggactttcg gaaatacagt atccatgttc attcttaact atcaacaatg      3060
     gtgaaaatat catttactgc tcttttcaat ttaacgtgtc ggcgattata caaaaaggtg      3120
     aaaaagccat tgacataatg tttaaagatc cacgttgttt tacatggatc gatgaacaga      3180
     ttcgcagtag aaaatacaag tcttcaaaag aattcatgta cgattttaaa atgcgaaaga      3240
     ttaagtttga aagcgatgta attatcacga aatataagac cagaattgaa gctggtaact      3300
     acgaaacaat cgaagctgtt ttggatgctt taaattcgtt aagaccttta gtacaagata      3360
     atgttgaatt tagattaaat gacggttcaa aaaaaataac tgtaacaagt agtagcaaat      3420
     atctgactag catatcattt tctccgatgt taagtctcca actgggtttt gaaccagata      3480
     caaatgtact gaacaaaact tcaacacatc ccgcaaacat tatattgggt ttaccttcgc      3540
     aactttttgt gtacagtgat ataatcgaac ctcaactgtt gggtgaaata atggctaaag      3600
     tgattcgtat tgttgttatc gacagcaaat attacattta cggtacacat catacacaat      3660
     tattttcaca tccacactac gtgccggtgt taaaaagaga atttgaaaac atcgaaattg      3720
     atataagaag ttcaacaggt gaaaaagtac catttcagtt tgaaactttg tgtgtaaaac      3780
     tacattttaa aaaaattgca taatgcattc ctgtcattat cacaattatt atgttaatca      3840
     agctggttcg ggcggtgttg gagcaattta taaaggctct gtttatcaaa aaggacacgg      3900
     ttttggtagt tttttaaggg gcttatttcg gacagttgta ccgttgctga aaagtggtat      3960
     taaaacaatt ggtaaagaaa cactacgtac tggttcgaat tttcttggtg atgttgttaa      4020
     cgaagtgcct gtaaaagagg catttaaaac gcgtgtaaat gaatcagttc aaaatttgaa      4080
     acataaagct caagataaac tagataattt agttgggtca ggagttataa aaagaagacg      4140
     aattcaaagt aaaaatcata gtcggttctc tgctcagcgt gtaaagaact gtaatcgtaa      4200
     aagtaaaagt gttccatata aagatatttt cggttaaaat gtcatttctg catccctgta      4260
     gttgtgagtg cgcaaaaagc gagctcgatc tttttgcatt accgccaact caaacaagca      4320
     ttgaaagtgg ccaatgggtt cattataaaa ccgtatctag tatatctgaa aatagtcccc      4380
     tcgaatttgt tgtacctggt ggtgaagact acattgattt atcgcaaact ctactttcac      4440
     tttgtattaa aatatccaaa gaagatggta gtaattatgt tgctgaagat aacattgctc      4500
     cagtaaataa tattcttcat tcgatgttta gtcaagttga tgtttatctc aatcaaaaac      4560
     tcatatcacc accaaacaac acatatccat acaagtgtta tttggaaaca cttttaaatt      4620
     acgattctgg agcaaaaaat tcacacttaa catgtggatt atggtatact gatacagctg      4680
     gtaaaatgaa tgttattgga aatgagaata tcggttacgc tgaaaggttt aaacatacat      4740
     ctctaagcaa ggagatcgat ctcattggtc acttaaactg tgacatattt aaccaagaaa      4800
     aatttttaat caacggcgtt gaaataagat taaaatttgc acgttctcgt gatagttttg      4860
     cattaatgtc atcaaataat cttaatggaa aaattcaaat taccgatgca actctgatgg      4920
     ttagaagaaa taggataaat ccaagcgtat tacttgcaca tgcaaaggct ttagagcttt      4980
     caactgcaaa atatccaatt acacgaacgg aattaaaagt tttaactata ccacaaggtg      5040
     tacaaggaaa gtcattggat aatgtgtatt tgggtcagct tccaaaaaga tgtgcagtgt      5100
     gctttgtgac aaataaggca tttaacggtg attacacaat gaaccctttc aattttgaaa      5160
     actttggatt gaattattta tctctgtacg ttgatggtaa tcaaattcca agtaaacctt      5220
     tacaacccgt ctttgttggt gggaatagga aattcgtttc aatgtaccac acgttgtttt      5280
     ctggtactgg tatacactat ctaaataccg gaaatggaat ttcgcgcgat aattacgccg      5340
     atggatattc gatagctgtt ttcgatttga caccagacct atcgtcgcat aatggttttt      5400
     cgtggaattt gataaaaaac ggaagtttac gtattgaagt aggatttact agagctctta      5460
     cagaaactgt caattgttta gtgtatggtg aatttgatag tgtattagaa attgataaga      5520
     agcgtaatgt aattgtagat tatagtaatt aatactcatg tatttagtat aaataaataa      5580
     aaatgtttta aagtaatatt tgtcagtttc atttaacatt tcatttgata tggttgtatt      5640
     tgtggatttt caagggttta attacggtaa ttgttccgat actctcacga taaaagaatt      5700
     agctgtattt aatacgaata aaagtgagcc gaagtccttt ttgttcaaac cgcccgaaga      5760
     tctttcaact ttaccacatc gctatcagaa gcaaaccgat tggttaacgc ataacttcca      5820
     cggactttca tggaattgtg gtatttacga gtacgaaaat ttgcctgaaa tattgcatga      5880
     aacaacgaaa aatgcaaaat gtatttacgt gaaaggaaca gaaaagagac gcctattact      5940
     gaaacgttta ccaaaaactc aaattgtaaa cattgaagat ttagagtgtc catcgcttcg      6000
     ttacttacga gaacattttg acacgacttg ttgtgtgaac cacataatta aaaacgctgt      6060
     atgtgctttt gaaaacgtac aaaacttggc tacttggtac aatgaatact ttacaactca      6120
     aacgttgtct ggagatgatt tctcgaaaga aaaaacatca tgttcttgtt tctgcgtata      6180
     acactttacc tgtcctaatc actagaccct ctatggtgat tattaacaga gatccagatt      6240
     acatgcctgg tagtcattgg atggctgtat acattgataa atttggtttc gcatactttt      6300
     ttgatagttt tggaaatcaa ccgccccgaa atattcaaaa gtttcttaaa aggaatgcat      6360
     tgatatggtc ttacaatagt tctcaaattc aagatatttc ttcaactgtc tgcggcaaat      6420
     actgtacttt atttctttta aactatgtat tgggcaattc tgttgatgat tttctaaagt      6480
     tatttaacaa caatttttat aataatgaca aactatgtaa taaaatgttt accgaatatt      6540
     tcatgaataa ataaagtctt tgcaagatcc atgttttttt ttctttcttt cctcatatct      6600
     cacaattcac tcaccagcac ggcgtgggcg gcgcgggtga cggcgcgggc gcgggtgcgg      6660
     ggcggcgcgg aacgaaacac gggcgcgaat ccggacgcgg gagcagacgg cgcgtagccg      6720
     agcacgggcg gcgacaagac ataatgagag tggttggcga catcaaaaat ctcacaaagt      6780
     atatctttac cttaccattc aataggctca gactaatccg gtggggtccg tctgcagact      6840
     atcaccgtag gagttctaga attatgtccc attttgtagg tctatgttta ggaaacgaaa      6900
     gaattaagga ttactttgat cagcatttgg aaaccgctcc cgctgatgag acgagacaca      6960
     tactttcaaa acaaatggta atatacataa tgtattctag gaagattttc tgttactcat      7020
     gtctcgtctt tacaaatatt tttgccctaa gggtaatttt cacctctccc acttaaggta      7080
     gttcgattta tcagtcagca tataaagggt gtagaaggaa taaaattttt acttgtcagt      7140
     ttcttcttaa gtgcgagtac tacacctaat aaatcatgta taattttgat aactttttga      7200
     ataatcaaag tgttagaaac ttattgtttc tttatgttgg tggttttttt aattatgatt      7260
     taaatttatt tcatcatgtg ttcaatcata taaattatac aattatgttt tcgggaattt      7320
     gtttaacaag tgaagaaatt cttatttaca ataagatgtc tcaacatatt aataatacca      7380
     aaaaaagtaa gtgtattatt tttgtaaaat tttatcaata gtctaacttt tttttttcgt      7440
     ttaattagaa gactctttat gcaataattt gttcaatcag tatgtggaca attttgatat      7500
     aaacttattt tctacttctc aaatatcgaa atctaatggt ggtactacta ctactagttc      7560
     tactactaat aaccaattaa accaagttaa gagcgcaaaa ggactaccaa acgagatttt      7620
     tataaccaaa aaaggcattt tcgtatataa aaataataat aacagtggaa attttaaaaa      7680
     cactacccca actaataccg aattgtgcgg tgagtgcatg aacacagcgg gtccttcgac      7740
     ttatacacca gtctgtaagt ttctcttatt tgattttttt ttccataata caatttttta      7800
     cattattagg tactcacaag aaatccgttg ttcaacatca gacaggttat ggaaattttg      7860
     atacaataaa ttttagtaaa ggtaatatat tttagaactt tgttctgtaa gttataataa      7920
     cctttttttt attatttaga tcaaagtaga caaaaaccta tcaccagtga ctcatataag      7980
     catattataa ttggaggttt cacggaaaga tttattaaaa aatttaatct caactcaaaa      8040
     tgtgtgacat ttactctaaa ggaattaact gaagaatatt tctcaaaccc tttgcaatgg      8100
     ttgaaagtaa tactttttct atttgtttat ttttccgtag aaaattaata cttttttttt      8160
     ttatatatat agaaagcaat tgatgaacta ctaaattacc tgggcaacga ttttcaacct      8220
     gaagatatta tcggcataac catgaataat gaaagttttc cacaaaaacc attgggaata      8280
     tcatttagaa aattttccga aatatcatct gacgtaatct taaacgtcat aggagcagta      8340
     cttcaaagca acagcacttt tttctccaac gatcagctgg aaattcgagt agacagagtg      8400
     cgtttaccga caggccgtgg cttttcagcg ttggatggaa aatgtgtaag tttctcagaa      8460
     tttgctgtag caaaaaatag tatatatgtc attgaaaata taaataatcg atgtttagcg      8520
     tacgcattag tagttggtaa agagtattgt gataacaatt ttaacaaaaa ctctttaaaa      8580
     aaattctcgg gtttaaaagg taaaattatt ttagataaaa tagctttgaa attgtgtcag      8640
     gatgctaatg ttgatttaga ctctaatagt ggtaattata cacatataca aaattttcaa      8700
     aattttttat atgactatgt tattgtagtt tataatagcc gagacggtcg ttcagtgtat      8760
     tttgaggggg cgaaatccca tgaaaaaaag aaaattaatt taattttgga aaataaccat      8820
     tataatgtca tattaagttt aacaggagca ttttcaacat catattactg cgatttatgt      8880
     cacattcgct attccagacc agatagacat aagaattgtc cctatatttg cccgtgctgt      8940
     cattcacaac ctccatgtaa aaccgatagt gctttaataa aatgcaatga ttgtcaacgt      9000
     aattttcgag gcgatatttg ctttagtaac cacattagaa gcaatgtttg taaaaaaatt      9060
     atgaaatgtt ctaaatgtga taaacatatt tggaaaaata aaattggaaa aaaagatgaa      9120
     catatttgtg gtgtaagtta ttgtaatgtt tgtcagcaaa ataaaccaat aggacattta      9180
     tgctatatgc aatcaaacaa aataaataaa aacaaatttg atgccgacaa taaattagct      9240
     ttatttattt tctatgattt tgaaaccaca caagataaaa agtttgatga taaaaacagc      9300
     acagttcatg aagtcaattt gtgtgtaatg cagcaagcct gtagcaactg ttcaaaattt      9360
     gaacaattag atgaaaacga aacatgtgat aactgtggat taagacaaaa tattttcttt      9420
     gacaaacctg ttgcatcact tttggaatac attgctgaaa aatcaaaaat atttaacgta      9480
     tatgcaatag ctcataatat gaaagggttt gatggctgtt tcatattaca atatgttttt      9540
     caaaatgttt cacgatggaa accagaagtg attcggaccg ggactaaact tattacaata      9600
     agatgtggta aatcaattac atttttagat agtcttaatt ttatacaatt accattatct      9660
     aaatttccgg aagcttttaa atttgaagaa agcaaaggct tttttccgca tttttttaac      9720
     actaacgaca atttcaatta tattggcccc attcctgaca aacattacta tggctgcgac      9780
     accatgaaaa ccaaagaacg agccgatttt ttaacatggc atagagaaca acttgcaaat      9840
     aattatgttt ttaatttaaa agacgaaatt ttaaaatatt gtattttaga tgtaaatatt      9900
     ctccgtaaag ggtgtttaaa atttagagag tgttttttaa aaattaataa taatgttgat      9960
     ccttttttgg aatctttaac tattgcttca gcttgcaact tggtatttcg ccgaaatttt     10020
     ctcaagtctg aaactattgg tattatacct aaaaatggtt accgttgtag cgacaatcag     10080
     tcgaaaatag ctattacttg gttatcatgg ttaatgcaaa ccgaaaatat taatataagt     10140
     catgctggta atggtcgaga ggtccggttg aatgggtcat tgttagttga cggattttgt     10200
     caagaaacta atacggtgtt tgagttttac gggtgttggt ggcatggttg tgaaaaatgt     10260
     tttttcaacc aaacatctaa tttaaacaat aaacatgatg cactttttct aagacgcgaa     10320
     aacaccttcg cgatagaaga aaaaattcgt aaattaggat gcaatataag aactatttgg     10380
     gagtgtactt tccgtaatga tataaaagat aatccggatt taaatcgttt tgtgaatgaa     10440
     cacaatttag agtcgtttac tccgttgaac cctagagatt gtttttttgg aggtcgcaca     10500
     aatgtgtgca agttatatta caaatgcaag gataacgaaa aaatcaagta ttacgatgtt     10560
     tgttccttgt atccgtttat aaacaaatac ggaaagtacc caataggtca ccccaaaaaa     10620
     atctatgttg ggaatgattg tttgaatatt gatataacaa cctttgaagg agttattaaa     10680
     tgtatagtaa tgcctccaca acatttatac catccagttt taccttaccg ttacaaaggt     10740
     aaattaacct ttccattatg caaaacatgc gtcgaaattt ctaatcaata cgattgtggt     10800
     cataaaccag aagaacgtca attcaccggt acttatgttg ctgacgaatt aagaaaagct     10860
     gtcgaactcg gttatgttat aacgctatta ttagaagcat gggaatacaa tgttgtgcaa     10920
     tataacaaag agacaaacac caagggcctt tttacagatt atgtaaatag atttttaaaa     10980
     atgaaacaag aatattctgg ctggctgtca tggtgcgatt cagaagataa aaaacaatta     11040
     tatctaacac aatatttcga aaaagaaggg atcgtgttag acgctgaaaa tatcagcgaa     11100
     aatagcggaa tgcggttcat ctctaaaata atgttgaata gtttttgggg aaaattcggg     11160
     caaagagaaa accctcaaaa aacagaaatt attgatgatg ctcgaacact ttttgattta     11220
     ttaactaacc actcgcgaat tacgcataat ttaacaattg taaataatga tgttttatta     11280
     gccaattggg acagtgtctg tgaagatata atccctttaa aaacagtcaa tgtaattatt     11340
     gccgcttata ctacagccgg tgcgcgatta gaactttaca aatacctgga gaaattagat     11400
     cgacgtgttc tgtacttcga tacagacagc gtcattttca cgcaaaaaga ggatgaatgg     11460
     cagccagaaa ttgggaactt tcttggtgat ttaactgatt aaatcggtac aaacaaaaac     11520
     ggtgtagaca gctatatctc cgaatttgtg agcgggggac cgaaaaacta cgcatacaga     11580
     tattgggtta caaaagaacg gttatttaaa actgtttgta aagtaaaagg tataacctta     11640
     cattataaga atgaaaaatt actcaattaa gaaaaaatta aagaatttat cctcaatcca     11700
     gagttagggt ctgaattaat attatatgat cgagttatcg cccgaacaca gcgttatgag     11760
     gttatatcca aagaggcaaa gaaaacttac cgcgtcaaca tttctaagcg tcgtcgtctg     11820
     aacgatgaat tatatgacac tttgcctttt gggtacaaat cataatgcac tcttttctgt     11880
     ttgtttctgt ttgtaaatta ttattgtaat atttgtaaat aaatgctgtt taattgttat     11940
     tattattagt attataatga tgattattat tattattatt aatattgtca tgtttacata     12000
     atatattatt ttgtaataaa aaaaataaca cagtcaaaca caagttttat ttatttattc     12060
     atttatttaa attaaaacca tttacactaa taaagatgga gcattataat cattaaactc     12120
     tctatagtat gctagcctct ttcgtacatg atattttata gaatgaggta acttaaagaa     12180
     aatttcgtac aaaacagaac ttgattcgaa acgttcaaca ataagtcttt tgacagtatt     12240
     ttcaaattct ttctcttcac ctccaccatt ttgcaatata tctaatgcga cagtgtcaat     12300
     gaagtgctcg taattattat aatatgattg cttgatgatg cgctgatcaa gtaaattgaa     12360
     aaaaaaatca ctaacgctta tcacattttg cactgtttca acacttaaat aacttggctt     12420
     atacacgtct tcaaattttg gaataaagcc aaggattttg ttcttgcaca ataccactct     12480
     gtaattttta agttcacaca taggaatttc tttatcgaca tcggttataa cgtatgcata     12540
     atcacgcatc ttctttacaa attcctcaaa ttcacttttt ataaacgatg tagcagccgt     12600
     cagttgagga ttgctaattt taataactgg aagataatct tcaaatggtt ttacaccaac     12660
     acttgaaaat ttgcttcctg attttttgtt atcggtatca cagtctcatc caaaagtcga     12720
     tatttttcat tttttatttt actcaattct tctgccttca tattctcgtc catttcatcc     12780
     gcaaacttgc tcatagcctt ctccaattcc acatcttcag gtaactctat caaaagctca     12840
     gaagaagaag aaggtgaatc ttgagacaaa accattactt gcgaacaggg aatttcacat     12900
     ttatactcgt catccaactt cggattttta aacgcatttg gatattcagt ttcttgcgac     12960
     ataaactcca cttcaatatt cgacttccca cgctttcgaa cttgacggag cattcttctt     13020
     tgattcattt ttctatatat ttaaaaaaaa agtgctatta tacacattaa tattttaaat     13080
     aaaaataatg tcaacttaca atttatcaac ctgggtaata cggacagatt tttttccccc     13140
     tccaaaaata tcaacaactt cttcacagga caaaaacacg aacactcaca aacacaagac     13200
     ctggtggaaa gcttcgtcaa agtggtaaca cacaactaaa ttaacaattt tcaaatttgt     13260
     ttttctacta tatactcaca cacactaaac taatttacag cgctggtaat tagactacac     13320
     taaaatccaa ttaaaatatc tttaaaatca ctcaaaagta caacgagtaa ttaaaaagcg     13380
     ctggtgatta agaggtcatt aacatgtcat taaagtgaaa gcgctggtga ttaagagggt     13440
     aattaaaaag tcattaaaac atcactaatt acactcattt actact                    13486
//
ID   Polinton-2B_CoFl repbase;    DNA;    INV; 17887 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 24.11, Created)
DT   25-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2B_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-17887
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2117-2117 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~87% identical to consensus. 23-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           4899..5795
FT                 /product="Polinton-2B_CoFl_1p"
FT                 /translation="MASVQYFKDVAHCIWQSFQQTINSEVDGSHIQRLIDT
FT                 CLTTIKDSDIFSLRNNLTTSEKQKLISAAALLKTVLQLLYDYLEVTESKKI
FT                 FMNEPVVFESDSEQKPKVFASESGQEDVSDLDKTFRNEDIVCVQGEGVATA
FT                 SNDENAAAVSLDDVNSAFENRITTTLIVNFKHLDLKKFLKDAEQKFIQRIR
FT                 RSLEKHTALKVNTILTAEYVIIKDNIKDMDLKYFNTKSQPIYQTTDIQQWF
FT                 DINVRQLIEKKMDDFQDKESGWSLHSILNLVVNINKLNPMQGSSFIDLPDY
FT                 IKKKMLV"
FT   CDS           14137..14823
FT                 /product="Polinton-2B_CoFl_9p"
FT                 /translation="MEETLTLSLSGTSSVLEAQYFPPIELSPKHNYVLGLV
FT                 ELFSFNSIPNIDENCNKFYVGNQVIVLPTGSYEIKDIRSFLIEVLQPRNIT
FT                 LDIKPNNNTLRSVIKCSHTIDFRPKDSIGRLLGFTQRVLKNNTTHISDLPV
FT                 AILKINALRVECNITSGAYINSHKVHTIHEFFPAVPPGYKIIEVPSQIIYL
FT                 PIIGRIIDHIQLRIVDQDGDLVNFRGEVITIRLHIKPSP"
FT   CDS           12873..13730
FT                 /product="Polinton-2B_CoFl_8p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MRRKRGHGLVNKVINSLPVELHLPGYQYCGPGTKLAK
FT                 RLARGDPGVNPLDAACKEHDIAYSKNRQDLKARHEADKILAEKAWQRVKAL
FT                 DSSIGERAAAALVTGAMKVKSKFGMGLEQEKKQSIKKRKRRMGRSKKKQCS
FT                 ALSAVIKAASQDMNTKSKSARDVISSALKGARSAVKKSGGKKYVTIPRILR
FT                 LPTQIGGALPLIPLFAGLSATGAIANGIAGIMKSINAAKSAKKQLAESQRH
FT                 NQTMEAIALGKGLYLKPHKTGLGVYLKPYAGKGLKKKKKKKSSKK"
FT   CDS           10666..9764
FT                 /product="Polinton-2B_CoFl_5p"
FT                 /note="integrase and chromodomain."
FT                 /translation="MEQIVEELHKAARRNYPRRKFNIRGLDETWQADLVEM
FT                 QPYARENKGYRYMLTVIDVFSKYAWAVPVKKKTGEEVTAAMHSILKKGRVP
FT                 VNMQTDRGKEFYNANFQNLMQKYKINLYSTYSNLKASICERFNRTLKDLMW
FT                 KKFSLQGNYKWLNLLQTLIKFYNNRKHRTIGLKPKDVVAENEVQILEKLKR
FT                 KCENSSKFKPKFKIGDKVRVSKTKQTFEKGYTPNWSTEIFTITRVAATNPI
FT                 TYHLKDYQDQPISGGFYEQELQKTKHPDVYLIEKVLRRRGNQVFVKWLGFD
FT                 STHNSWTNK"
FT   CDS           11705..10995
FT                 /product="Polinton-2B_CoFl_6p"
FT                 /translation="INKKKKREKFSDHDLTFESAISESDDDDDDTDLNNTI
FT                 QHQSHDSVQVSKNLSNNFYLQILDQNQKDLLDLKYGVRKENELYKLGDSRI
FT                 EFENNHIKIDDLKYPMTPGLMELLIKKHPNESLLTQEDFEKYYVLLKMSNV
FT                 HRKGFKKNGAIRTHNSNKFIKMIAPMFDLTVRKKGGSLLPHYKTARIMQQV
FT                 DYTHWDDPNELVDRLRLLIAEKSAGNTSHDNEIISIIEELREGGYIY"
FT   CDS           12700..11999
FT                 /product="Polinton-2B_CoFl_7p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MEFKEQSIKLQVPNFDAIVKQEKRSNRHGELLPDSIR
FT                 AVFCGPSNCGKTNSLLALIVHPNGVKFENVYVYSKSLHQPKYKFLKELLEP
FT                 IEGVKYLPFSEHETVVSPDDALPNSIMIFDDIACEKQDNVKAFFCMGRHKN
FT                 VDCFYLCQSYAQVPKHLVRDNVNFLVLFRQDEVNLKHVYDDHVNSDMPYIQ
FT                 FKNLCSNCWNDDKHGFVVINKDRQINNGRYRKGFDNFAIHLGHT"
FT   CDS           6226..6753
FT                 /product="Polinton-2B_CoFl_2p"
FT                 /translation="MCDRCFHYFWSKQKLEAHEVDCKHLNKYKITLPDREK
FT                 NEHILEFKNFTFKNRVPFVVYADFECLLVPVNDVRVYQRHKAYSIGYFLKC
FT                 CYDDSKSEYKSFRQSEENDDETPAQWFVKALHSLAIKLENLYKNPLKMIYL
FT                 TSEEQIKFDKAILCHICNQPFSSNDIKVRDHCHLTGK"
FT   CDS           7596..9233
FT                 /product="Polinton-2B_CoFl_4p"
FT                 /note="DNA polymerase B (C-terminal half)."
FT                 /translation="MVMFIERGIRGGISQCCNRYAKANNLYMKNGYKDDKD
FT                 EKYLMYYDVNNLYGWAMTQPLPYSGFKWIQNISSLGILNVADDAEIGYILE
FT                 VDLEYPKILHNAHKDLPFCAEHMTPPGSKQNKLMTTLYDKKRYVIHYRALK
FT                 QAVSHGLRIKKIHRTLQFNQNSWLKKYIDLNSEKRQNAQTDFEKMLYKLFN
FT                 NAVYGKTMENERKRIDVKLINKWEGRYGAETYIARPNFHSCDIFDEQLVAI
FT                 QLLRTDVCIKKPIYVGLSVLDLSKTLVYEFHYDFMKNKIGDRCKLLYTDTD
FT                 SLVYEITNQNIYNVMCENIEKFDTSDYHLNNEFHLPLVNKKIVGLMKDECN
FT                 GKIMLEFVGLRSKMYSVKIQDQNPLKKAKGVKSSVVKTTITFDDYITCLCE
FT                 NTSMTREQKNIRSHHHQLFTEKQTKIALSAHDDKRFLQPGCTDTLPWGHYS
FT                 IVGEESSNKREGSIEGVANQVAEAARAFTVLDPPKIDRTLADEPTVEGLVL
FT                 YKELSQPGKLILHSSRGFSKVELNQQKLTSPSSEPPSKKSKYSQGDIFFL"
FT   CDS           6778..7545
FT                 /product="Polinton-2B_CoFl_3p"
FT                 /note="DNA polymerase B (N-terminal half), maybe
FT                 frameshifted."
FT                 /translation="KKIFFFLIIMINLKKNFFRYRGPAHNKCNINYQDSRT
FT                 IPVVFHNLSGYDSHLFIKELAKCFPGRIQLLPQTKEKYISFTKYVEGTDIN
FT                 LRFIDSFKFMALSLDKLSSYLNEFKILETVFTNDDKYTIDQINLLKRKGLF
FT                 PYDYTSSFKKLGEKMLPSKQDFYSSLYEAHITDDDYEHAKNIWNTFNIQTL
FT                 GEYSDLYLKTDVLLLTEVFENFRNNCLEAYGLDPAHYYTTPGLTWDAMLKY
FT                 TKVRLFYNFLLILKI"
FT   CDS           15075..16136
FT                 /product="Polinton-2B_CoFl_10p"
FT                 /translation="MDEILSIQSPVAFDESIAHYEIHAHQPYASSTYGNSD
FT                 EIRISIQHQDLCLLPSKSSLHVYGRLVKADENTAVTNTALINNAICHLFEE
FT                 IRYEINAIEVDKCKNVGLTTLMKNWLSLYPDQNKSMINAGWLGVGEEEDDS
FT                 LTNNNGYFDIILPLNMILGFAEDYRKIVVNVKHELILTRSRNDINAVLQTP
FT                 LNVADPAAAATWEDFKIVILKLEWLMPYVVMSDSHKIRLLNYLQKDKFVSM
FT                 SFRTWELYEYPLLPSTSKHIWTVKTSNQLEKPRYVILAFQTNRKNQKNVSA
FT                 SMFDHCNIRNVKLYLNSQYYPYGDLNLDITRNQYALLYNMYANFQNSYYGK
FT                 KNAFIRQTSLS"
XX
SQ   Sequence 17887 BP; 5888 A; 3195 C; 3134 G; 5667 T; 3 other;
     agtagataag ctatggcgat tccagcacag cccccctccc ctcggtagcc cctctcgcgg        60
     tgttcccctc cttatggcgg tggccccctc tcgtggcgtg cccctcctta tggcggtggc       120
     cccctctcgc ggcgtgcccc tccccgcggc agcccctctt cgtcgatgag ttggactccc       180
     cttgcagcca atgggcgcgc gggtctggca ggcttgagtt tgcgtgcgct gcgatgcgca       240
     tttttcgcct acagcgctgc ttgagattgc gcgcgctgtt tgaatatctt gtgcagattg       300
     tgcacgcgat gggtatatgt attttttttt tgtaagcgag tgcgttgcac gatgatgtag       360
     gacgtgaagg ggtaggaaaa taattgttta acatttttat tgtttatttt ggttaatctg       420
     tttattttaa attwaaaaaa tttatattta caaaactaga cttgcaaaat attttcaaat       480
     tttatttgtt ctaacaataa ttataaagaa tttttttttt taatttgcgt ttacaagaat       540
     gaatggtcaa gtatgtgatt ctttcaattt catacttttc ccgactttgc atccaatctt       600
     tcatagccaa agcatttttc accgcacata ctggatcagt atgaaagctg tgatgtttgc       660
     atggctcata gtcttgtacg agatttttaa gagcaggaca cccatactct tcaatattaa       720
     taactctgaa aaaaatgttt gtattattcg taagaaaaat ttattttttt attttcaagg       780
     tatttttatt aagctaataa tatataaaat acatactcgc atggtagtat gttttgtaac       840
     cattttttct tttcacaacc tttgacataa actgttccag catcaatcag catgcgcttg       900
     aaattgttta ttccttccat gtgagaaata tcaccaaaat cccaacttag accatggaaa       960
     ttagcttcta gccatttatt atgtttttta tatttttttg gtagatgctc aaatggaaaa      1020
     ggtgggttaa gcacaataac aactggcaaa gtatccttgt taaggtcaac aaatgaaatt      1080
     tctttaaaaa taaaatagtt gacgaggctt ttaaagccct gaaagtctac aatgtactcc      1140
     attttaaaag gaaaaagtaa ccgatgctac tcggtctagt gtgatcaagt gaatgaagtc      1200
     gaaagcttga tgtggttcat aataggtacg ttttagctaa acggataagt gcgcattgag      1260
     catgcgcaaa ggctcctacc ccctcccaat tgtgtgcacc acctgcagcg ttgtcggagt      1320
     ttgcgcgcgc cagtgcaact gcgcaaaggc tcctagcatg cgcaaacgct cctacccctc      1380
     tcccaattgt gtgcaccacc tgcagcgttg tcggagtttg cgcgcgccat gtgcaacact      1440
     gcttgagttt tcatgcagct gatgggcgag cgactttaac agctcccttt cactttttca      1500
     cgtgttatcg gagtttgcgc gcgccatttg caacactgct tgaattttat gcagctgatg      1560
     ggcgagcgac tttaacagct ccctcttact tttccgcacg ttgtcgagtt tgcacgtgcc      1620
     atgtgccaca tggcttgagt atttatgcag ctgatgggcg cgcgctttaa tacctgtagg      1680
     ttgcagcttc ctttcacttt ttcgcgccat gtgcaacact gcttgagttc gcggtgcagt      1740
     atgcgtgcat tacctgtagc gttggttgag ttagtgcgtc ttcttagata tttaaaatat      1800
     tttgcacata cgatacttac acaaaaatat attttgtagg attatgcgca ttgtgtaata      1860
     atataggatg aggaatcaaa gggaaataat tgtacaagac tttatttatt tttgcctagt      1920
     gtatttttaa tgaaaaatat atacaaatac aaaatttaat tcataaaatt aatgtaactt      1980
     atccttaaaa taaattcaca aatattaaaa actttacaat tgttaaaatt aaaacgaaag      2040
     tctacgacag tgcttttttt tatcaggact gcctgtttcg tcctctgaag attttctttt      2100
     ttttttcacc gtactcatgt catgcagctc tggtgaagac aataagtcaa taataccgtg      2160
     aggtgttccc gagaggtcaa ctaatggtat aggctgtggc gattccgtga ggtcaacttc      2220
     tggaatcggt tgtggggatc tcgtgagatc gaccacgggt atcggttgcg gtgatcttgt      2280
     aagatccact tcatgtatca ccggtcttgt gaggttcgcc tcgagtgtcg gtgatcttgt      2340
     aacatctacc tcgaatattg gtgaccacat gagatctaca tcaggtgtag gcctatagac      2400
     acgtgttggt gatgtacggt tatgttcttc aagcatcgaa aaagatgctt gaagacacgt      2460
     gtcggtagaa ataaattcct cagcatcgtc tgaaaacaaa caaataaata aattttaaaa      2520
     attgaaacaa aatgaaattt tttatcaaaa taaatattct aatttaatcc tttatactac      2580
     ttaccgaaaa aggaggcgtg taacgatggt gataacaatt catcgtctaa tggtgtttcc      2640
     aatcgtccaa acatacttag ctctgtaagc tgtcttgctc ctggcaacgt gtcctcgttg      2700
     agaagtgctt cttctaccga aacgatgtta tttaggtgtg gagagcatgt taaaaagtta      2760
     ccctctaagt ctgaaacaaa aacaaaaaat ttacattttc attcatgtta aaaattttca      2820
     ttacatcttt aaatctaaga agatcttatt ttaataaata aacttaccaa aaaacgtgat      2880
     ttctcgcaat ggcaatgtag atgactgagc cggtctttca atatgagcac gcatattaaa      2940
     ttcttctgtg tataggactg agggcgatga tggtgatgaa tctaaattat cgttgaagcc      3000
     tcgttcaaat acctcattta aatcctgctc gaatatttcg tatgctggag gttgatccac      3060
     ttcatcctcc aagtcctgca caaattcctc ggacactaaa tcctccaaat tttcccattc      3120
     tagcacttca atgtcacttg aaaattcttc atttacagga gccatttcaa cagacaagat      3180
     atctactgtt taattggagt gtgactgata ttttcaacta actgttttcg actaactatt      3240
     ttgaagcaca acttcccttt taaagactcc ggtactgcta ctccgacaat ttaccccttc      3300
     tccatttatt ttctcatgcg cagtatgaaa aactcaaact agagtggtgg aaatttgccg      3360
     aacccccctc ccctaaattt tcacccacgc tgtatgagaa ttcaatatcc ttggagatgg      3420
     aaatttgtat cttgtagtga gccaatgaga gaactagaaa aggacatagt tatgccttcc      3480
     cctttccata tgcccacatc aaaggtctgt ggttgggaag aagtatcccc tctccatagc      3540
     atcaaatact ttaaaccaat aggaaaatta gaaaaagaca aatattttct cctactcatt      3600
     ccatcatatg caaaatcttc aacttatgga aagtggcttt cctcttcctc ttccgccata      3660
     gtcttaaaga gcaatccctt gaccttcgcc acgtgcttca gttatatttt taacatcagc      3720
     gacagcagcc gaggagagaa agaagttaca cttcaggata cttcgtacaa cgcatcagcc      3780
     aacgctctca agtgtgaagg tattttgtaa aatcttaata atttttttcc tttaaaaaaa      3840
     tgaaatatgt aatttttttt tctactcata aagacctatt aataacgtca tgaattcaaa      3900
     attttttaaa aagtttctca cttttctata aatagcaatt taattaaatc ttttaagttt      3960
     ctwttctcct cctttttcta caacaatgtg gttgcaagct atttgactca agacgcagaa      4020
     atgatgtcag acgcagaaat gatgtcacga gttcaatttc tttcaactac ttgacttctt      4080
     tctattctct acctttactt gtaacattaa ggaaacattt aaaaaatctt tttattcgac      4140
     tcaagacgca gaaatgatgt ctagacgcag aaatgatgtc atgagttctt tatttctttt      4200
     aattagttaa cttctttcta ttcttcacct tatttttttt tagtatttta aaaagcattt      4260
     acaaaaaaaa attttttcag cattaacatg gtgaagaaga cacgaaaggg tgatatcaga      4320
     agatatcaag aacgtctgat ttttcgtgcc ttaggacgca acgtagaaaa tttagaaagg      4380
     cagctcgtag atgattttcc agaagtagta gcaccaccag aacattcccc agctgtaatc      4440
     atggatcctc ttccagagct accttccaca ctactcaagg atcctcttcc agaagtagta      4500
     gtagtgtcaa cagagcaacc tattgcagca gaaataccaa cagaagttga aatgttcaac      4560
     atatcaacat ccacagcagt aacaggtact tttttttttt tttcctgttt ttcaaaagaa      4620
     atgaaggtga ttgaaaaaaa aaaaaagaag aaataaaagt cgaaatacac aaaaatgtat      4680
     aaaatgctaa aaaaacttat cgaacttata aaaaactttc gtttgtagag accaatttta      4740
     gtatcgtttt caatagtaaa attaatcatt ccaaaagaac gtatttataa aaaccccccc      4800
     cccccccatg ggctgatctc taaggatatt taggggtaga aatcaccgaa gcagctcact      4860
     tttgtgctgt tgcttgagta gttaacttct tgctagccat ggcttcggtt caatatttta      4920
     aagatgtggc tcactgcatc tggcaatcgt ttcaacaaac gattaatagc gaagtcgatg      4980
     ggagtcacat tcaaagacta atagacacat gtcttacaac tattaaggat agcgatattt      5040
     ttagtttaag gaataatttg acaacatcgg aaaaacaaaa attaatatct gcagctgcat      5100
     tattaaaaac tgttttacaa ctgctttatg attatttgga ggtaacagag tcgaaaaaaa      5160
     tatttatgaa tgaacctgtt gtttttgaat cagatagtga acaaaagcct aaagtttttg      5220
     catctgaaag tggtcaagaa gatgtgtcgg atttagacaa gacatttaga aatgaagata      5280
     ttgtatgtgt tcaaggtgaa ggtgtagcaa cagcttcaaa tgatgaaaat gctgctgcag      5340
     ttagtcttga tgatgttaac agcgcatttg aaaatcgtat tacgacaact ttaatagtta      5400
     attttaaaca cttggatctg aaaaagtttc tcaaagatgc tgaacaaaaa tttattcaac      5460
     gaatccgacg atctcttgaa aaacatactg cattaaaagt aaataccata ttgactgctg      5520
     aatatgtcat aattaaagat aacatcaagg atatggattt aaaatacttt aatacaaaat      5580
     cacagcccat ttaccagacc actgatatac aacagtggtt tgacataaac gtacgacagt      5640
     taattgagaa aaaaatggat gattttcaag ataaggaatc tggctggtct ctgcactcga      5700
     ttttaaattt ggtagttaat attaataaac taaatcctat gcaaggtagt tccttcatag      5760
     acttaccaga ctacataaaa aaaaaaatgc ttgtgtaaat gtagtaaaca aagacgacca      5820
     atgctttaaa tgggctgttt tatcagctct tcatccagta agcagaaatc caaatcgtgt      5880
     ctctaactat attaaatatg aaaatgagtt aaattttgat ggtattgagt ttccagttat      5940
     cccgaagaaa atcgtaaggt ttgagaatca aaacaatatt tcaatcaatt tatattttaa      6000
     aaaaaaaagg gtcatacatt tgatattttc cctaatcatt tgactgcaaa taaaaaagaa      6060
     aaacatgtga atgttttact tgtcgaaaac ttctatacag atgatgaaga atataacaat      6120
     aataaatgcg actccgtcgt agagtacaaa tatcattatg tgtggataaa aaatttatcg      6180
     cgtttaatac gaaaacagtt atctgagcat caacatgcag caaatatgtg tgatcgttgc      6240
     tttcactatt tttggtccaa gcaaaagtta gaagctcatg aagttgactg caaacattta      6300
     aataagtata aaattacact gcctgatagg gagaaaaatg agcatatact tgaatttaaa      6360
     aattttacgt tcaagaaccg tgtacctttt gttgtatatg cagacttcga atgtttgttg      6420
     gtacctgtta atgatgttcg cgtctatcaa agacataaag catatagcat tggttatttt      6480
     ctcaaatgtt gttatgatga tagcaaatca gaatataaaa gttttagaca aagtgaagaa      6540
     aatgatgatg aaacacctgc tcagtggttt gttaaggctc tccattcttt agcaataaaa      6600
     ttagaaaact tgtacaaaaa tcctcttaaa atgatctact tgacatccga agaacaaatt      6660
     aaatttgaca aagccattct atgtcatatt tgcaaccaac cttttagttc aaatgatatt      6720
     aaagtcagag atcactgtca tcttactgga aagtaagcat cattttatta aacttaaaaa      6780
     aaaatttttt tttttttaat aatcatgatt aatttgaaaa aaaatttttt tagatatcgt      6840
     ggtccagcac acaataagtg taatattaat tatcaagact caagaacgat acctgtagtt      6900
     ttccataacc taagtggtta tgattcgcat ttatttataa aagaacttgc aaagtgcttt      6960
     ccaggaagaa ttcaactttt accgcagacc aaagaaaaat atatttcgtt tacgaaatat      7020
     gtagagggta ctgatattaa tctacgattt attgattcct ttaaattcat ggctttatca      7080
     cttgacaaat tatcatcata tttaaacgaa tttaaaatat tagaaacagt gttcacaaat      7140
     gatgataaat ataccataga ccaaataaat ttattaaaaa ggaaaggctt atttccttat      7200
     gattatactt cttcttttaa aaaacttggt gaaaagatgt taccgtcaaa acaagatttt      7260
     tatagcagct tatacgaagc tcatataact gatgatgatt atgaacatgc taaaaacatc      7320
     tggaacacat ttaatattca aacacttgga gaatattcag atttatactt aaagactgac      7380
     gttctgctgc ttactgaagt ttttgaaaat tttcggaaca attgtcttga agcctatgga      7440
     ttggatccag ctcattacta tacaacacct ggcttaacct gggatgctat gttgaagtat      7500
     acaaaggtta gactttttta taattttttg ttaattttaa aaatttaaaa atattataat      7560
     tgcaggtaaa actagaattg ttaactgata ttgacatggt tatgtttatt gagcgaggca      7620
     ttcgtggagg catatctcaa tgttgtaatc gatatgcaaa agccaacaac ttatacatga      7680
     aaaacggcta taaagatgat aaagatgaaa aatatttaat gtattatgac gtaaataact      7740
     tgtatggctg ggcgatgact caaccattac cttattcagg ttttaaatgg attcaaaata      7800
     taagttcctt aggtattttg aatgttgctg acgatgctga aattggttac atactcgaag      7860
     tagaccttga atatcctaaa attcttcaca atgctcataa agatttacca ttctgtgctg      7920
     agcatatgac gcctccagga tccaaacaaa ataaactaat gactactttg tatgacaaaa      7980
     agcgatatgt gatacactat cgtgcactta aacaagctgt aagtcatggt cttcgtataa      8040
     aaaaaataca tagaactcta cagtttaacc aaaattcatg gctaaagaaa tacattgact      8100
     taaacagtga aaagcgtcaa aatgcacaga ctgattttga gaaaatgtta tataagttat      8160
     ttaataatgc tgtttatgga aagactatgg aaaatgaacg caaacgaatt gatgttaaac      8220
     tcatcaacaa gtgggagggg cgatatggtg cagagacata catcgcacga ccgaatttcc      8280
     acagctgtga catatttgat gagcagcttg tagctataca actacttcgt acagatgtct      8340
     gtataaaaaa accaatatat gttgggttga gtgtcttaga tttatcaaaa acacttgtat      8400
     acgaatttca ttatgatttt atgaaaaata aaataggaga ccgatgcaaa cttttgtaca      8460
     cagacactga tagtcttgtg tatgaaataa caaatcaaaa tatttataat gtaatgtgtg      8520
     aaaatattga gaaatttgat acttcagact atcatttgaa taatgagttt catttgcctc      8580
     tggttaataa aaaaattgtt ggtttaatga aggatgaatg taatggaaaa atcatgttgg      8640
     aatttgtagg actacgaagc aaaatgtaca gtgtgaaaat tcaagatcaa aatccattaa      8700
     agaaggccaa aggtgttaaa agttcggttg tgaagactac aataactttt gacgattata      8760
     taacatgttt gtgtgaaaac actagtatga cacgagagca aaaaaatata agatcgcatc      8820
     atcatcagct ttttactgaa aaacagacga aaattgcact aagtgctcat gatgacaaac      8880
     gatttttgca acctggttgt acagataccc taccatgggg tcattacagc atagtgggag      8940
     aagaatcatc caataagagg gaaggatcga tagagggggt agccaatcag gtagcagaag      9000
     ctgcaagggc ttttactgta ttggatcccc caaaaataga ccgaacacta gcagatgagc      9060
     ctacagtgga ggggttggtg ctatataagg agttgtctca accaggcaag ctcattctac      9120
     actccagcag aggtttcagt aaggttgaac ttaatcaaca gaagctgaca tcaccttcaa      9180
     gtgaaccacc gagtaaaaaa tctaaataca gtcaaggtga tatatttttt ttatagtaaa      9240
     tatttgtgca tatttactca gcatatgtat gtatgaatat tttatgctaa gttccatgtt      9300
     ttttattttg ttaaagatgg atcttgcagc actcaacaaa atcgctgaca gtgattttct      9360
     tcctacgaag aaactttccg aattgatacc taatcaaaac tacatggtgt caaaactaag      9420
     aaaagtgtat actaaatttg gacctaagat agttgcagaa cttgacgatg aatttcaaat      9480
     ttttctgcag acgaaaataa gctcagctct atttaaaaac gaagaatttt ataatgaatt      9540
     gttggaggct gtaaataaat ttaaattatt tatagtgtac aacggaaaac acatcatatt      9600
     ttcttatgca taatgtaaaa aaggtgaaaa aataaattac aatttttttc caaaatttga      9660
     gtatttattt aaaatattct tactacgtaa tattttcaat attacttgat acatataaga      9720
     atcttataat ttttttactt aacgtaattg aaaaaaaatc ttatttattc gtccaactat      9780
     tgtgagtact gtcaaaaccc aaccatttga caaaaacttg attgccacgt cttcgaagaa      9840
     ccttctctat gaggtataca tcaggatgct ttgttttctg cagttcttgt tcgtagaaac      9900
     ctccagaaat aggttgatct tggtaatctt tgaggtgata cgttattgga tttgttgctg      9960
     ctactcgcgt gatggtaaat atttccgtcg accaatttgg cgtatatcct ttttcaaatg     10020
     tttgtttggt tttgctcact cgtactttat caccaatttt gaatttaggc ttaaacttac     10080
     tgctattttc acattttctt ttcaacttct ccaaaatttg aacttcattt tcagccacaa     10140
     catcttttgg tttcaaacca attgttcggt gttttctatt gttataaaat ttaattaacg     10200
     tttgtaacaa attcaaccat ttataattgc cttgcaaact aaattttttc cacatcaaat     10260
     cttttaaagt acgattgaat cgctcgcata tagacgcttt cagattgctg tacgttgagt     10320
     ataaatttat tttatatttc tgcatgagat tttggaagtt tgcattatag aattctttgc     10380
     cacgatcagt ttgcatgttc acgggcaccc gtcctttttt caatatcgaa tgcattgctg     10440
     cagttacttc ttcaccggtt tttttcttga caggtacagc ccatgcgtac ttggagaaaa     10500
     catctattac agtgagcata taccgataac ctttgttttc acgagcgtaa ggctgcatct     10560
     ctacaaggtc tgcttgccaa gtttcgtcta agccacgtat gttgaatttt cggcgaggat     10620
     agttacgcct ggctgcctta tgaagttcct caacgatttg ctccatgtat taattgtcta     10680
     ggtttaagtt ttttgaatca gcttgaataa atgggaattt tttttgcaag ttgtatataa     10740
     aaattcgaaa tttatctatt tttttttcaa gtcttttaat tacttcaatc aagtaagcat     10800
     aatttacagc atcttgaggc tgttttggtg ttccaacatt gcacagcctt ttattatcta     10860
     agtcatactg tccatctgcg gtaagtttat atccaatacc gggaggacct cggctaccgc     10920
     cttcggtcct acccaatttt cgaccgaata catcgacact cattttgata ctgaagcaat     10980
     gattacatgc atcaatatat atatcctccc tcacgaagct cttcgatgat tgatataatt     11040
     tcattgtcat gacttgtatt tcctgccgac ttttcagcta ttaataagcg taagcgatct     11100
     actaactcat taggatcatc ccagtgtgta taatctactt gttgcattat tcgagcagtt     11160
     ttataatgag gtagcaacga tccacctttt ttacgaaccg tgagatcgaa cattggagca     11220
     atcattttaa taaacttatt actattatgg gttcgtatag ctccgttttt tttaaaccct     11280
     tttctgtgaa catttgacat ttttaataat acgtagtatt tttcaaaatc ctcctgtgtc     11340
     aacagagatt cattaggatg ctttttgatg agtagctcca ttaatcccgg agtcattgga     11400
     tactttaaat catctatttt gatatgatta ttttcaaatt ctattcgcga atcgccaagt     11460
     ttgtacaact cattttcttt tcgcactcca tactttaaat ctaataaatc tttctgattc     11520
     tgatcaagta tttgtaaata aaaattattt gataaatttt tactgacttg aacagaatca     11580
     tgagattgat gttgaatagt attatttaaa tcagtatcat catcatcatc atcactttca     11640
     ctaatggcag actcgaatgt taaatcatga tcactgaatt tttctctttt tttttttttg     11700
     ttgattcact ttatcaactt tattactttc ttcatcgttt ttattataaa aataattgtg     11760
     agtaacagaa ttattacttt tttttttgtt tcggcgacaa tttccattaa agggtctgtt     11820
     attggtttga aagtttcact aagtactttt tcagcctcat tttttccaaa cttcaacagt     11880
     ctgtactttt cttgaaccgc ctctcgcgcc ttcactaact ggcgtagaac gtctttctct     11940
     tgttgataca tgatgatgat gatccaatgt cttgcaacac actgtaacga ttgcgctagg     12000
     tatgtcctaa atgtatggcg aaattatcaa agccttttct gtagcgacca ttatttattt     12060
     gcctatcctt gtttataacg acgaatccat gtttatcatc attccagcaa ttagagcata     12120
     aatttttaaa ttgaatgtat ggcatgtctg agtttacatg atcatcatac acatgcttca     12180
     aattaacttc atcttgacga aataaaacta aaaagttgac attatccctt acaagatgct     12240
     ttggcacttg agcatatgac tggcaaagat agaagcagtc aacatttttg tgtctaccca     12300
     tgcagaaaaa ggcctttaca ttatcttgtt tttcacaggc tatatcatca aaaatcatta     12360
     tagaattcgg taaagcatca tctggtgaga ctacagtttc gtgttcactg aaaggtaagt     12420
     atttcacacc ctctataggc tccaatagtt cttttaaaaa cttgtacttt ggttgatgta     12480
     gtgattttga atacacgtac acattttcaa acttaactcc attgggatgc acgattagag     12540
     ctaataagct attagtttta ccgcaattag atggaccgca aaatactgcg cgaatactgt     12600
     cagggagtag ttcgccatgt cgatttgaac gcttttcttg ttttacaata gcgtcaaaat     12660
     taggaacttg taattttatg gattgctctt taaactccat gtctatactg tatgaataat     12720
     cagttcaaac taatctttta atgaaatagt acaacgctta tatagtttga gctctttatt     12780
     tgtcaacgaa tttgtctact ataaatacat tattcatttt ctcgaacgct tagtcataat     12840
     ccaacctctg aagactaatc atcatcatca tcatgcgtcg taagagagga cacggtcttg     12900
     taaataaagt cataaattct ttaccagtag agcttcattt gcctggctat cagtactgcg     12960
     gtccaggtac taagctcgct aagcgtcttg ctagaggcga tccaggggta aatccgctgg     13020
     acgcagcgtg caaagagcat gatatagcgt actcaaaaaa tcgacaagat ttgaaagcca     13080
     gacacgaagc agataaaatt ttagctgaga aggcttggca aagagttaaa gctttagatt     13140
     caagtattgg tgaaagagca gcagctgccc tagtgactgg cgctatgaag gttaaaagta     13200
     aatttggtat ggggttggag caagagaaaa aacagagtat taaaaaaagg aaaagaagga     13260
     tgggtaggtc aaagaaaaaa caatgtagtg ctttaagcgc agttattaag gctgcctcgc     13320
     aagacatgaa tactaaaagc aaaagtgctc gagatgtcat tagtagtgct ttgaaaggtg     13380
     ctcgtagtgc ggttaaaaaa tcgggaggta aaaagtatgt tacgattccg cgcatcttac     13440
     gccttcctac tcagattggt ggagctttac ctttgattcc cttgtttgct ggtttgagtg     13500
     caaccggtgc tatagccaat ggaatagctg gaattatgaa gagcataaat gctgctaagt     13560
     cagccaaaaa gcagctagca gaaagtcaga gacataatca aaccatggaa gctatcgccc     13620
     ttggaaaagg tctttatctc aaaccgcata aaactggatt aggagtctat ttaaagcctt     13680
     acgctggaaa aggtttaaaa aaaaaaaaaa aaaaaaaaag ttcaaagaaa taaaattacc     13740
     tgatcgagct ctgaccaaca tagatttgat gaaatattct aaaatcttaa aaattcctca     13800
     ttttcgtgga gtattcatga gaaacagttt acctgctgac ggtccatggt tttgtgaaac     13860
     agctatagta aatcttgatg ataagaatgg acctggaact cactgggtgg cttatcgaaa     13920
     acgtggtaat aatgttgtgt actttgacag ttttggagat ctgcagccac ctactgactt     13980
     aatgttgtat ctagaagtta gtaaagtgaa atataatcat aagcgatatc aagaatttaa     14040
     ctcctacaac tgcggtcatt tgtgcttaaa gtttctttta aaacaaatat aactttctta     14100
     catggggaga aaccacttag ttacacttca acaaccatgg aagaaacatt aacactcagc     14160
     ctttctggta cttcttctgt tttagaagca cagtattttc caccgattga attatcacca     14220
     aaacacaact acgttcttgg cttagtagaa cttttctcat tcaactccat cccaaatatt     14280
     gatgaaaatt gtaataaatt ttatgtcggc aatcaagtta ttgtattacc aacaggcagt     14340
     tatgagatta aagatattag atcatttttg attgaggtat tacaacctcg caacataact     14400
     ctcgatatca agccaaacaa taatacgctt cgaagtgtta tcaagtgcag tcatactatt     14460
     gattttagac ctaaagattc tataggccgt ctattaggtt ttactcagag agttctaaaa     14520
     aataatacca ctcatatttc agacttacct gtagctattc taaaaataaa cgcattaaga     14580
     gttgaatgta acatcacaag tggagcttac ataaacagtc acaaagtaca cacgattcat     14640
     gaattttttc ccgctgtacc acccggatat aagattattg aagttccttc acaaataatt     14700
     tatttaccga tcattggacg tatcattgat catatacaac tacgcattgt agatcaggat     14760
     ggtgatttag taaattttcg tggagaagtc ataactataa gattgcacat aaaaccctct     14820
     ccataatggg tatcatttat aatcagacaa atcatatagg cagctcaata tgcactccag     14880
     cactcagtca acaacgagct ctcaaagcgt tgagacgtca gagaaaaaag tccatcaaag     14940
     catcgagaca tccaagaaaa cgattgacac atcaaaaact aactcatcaa aacattcagt     15000
     ttataaaaag tctcggtcta aaaataaaaa gccctggtgg aaactaaatt ggatactttt     15060
     ttgttgtata caaaatggac gagattctaa gtattcagtc tccagtcgca tttgacgaat     15120
     ctattgcgca ctatgagatt catgctcatc agccgtatgc atcatcaaca tatggcaata     15180
     gtgatgaaat tcgcatttca attcaacatc aagacttgtg tcttttacca tccaaaagtt     15240
     ctttacatgt ttacggaaga ttggtcaaag cagatgaaaa tacggcagta acaaacaccg     15300
     cattgataaa taacgccatc tgtcacttat ttgaagaaat acgatatgag ataaatgcta     15360
     tagaggtaga taagtgcaaa aatgttgggc taacaaccct gatgaaaaat tggctatcgc     15420
     tttatcctga tcaaaacaaa tctatgataa atgctggttg gcttggcgtt ggagaagaag     15480
     aagatgatag tcttactaat aataacggct actttgatat tatacttcca ctcaatatga     15540
     ttttaggttt tgctgaagac tatcgtaaga tagttgttaa tgtaaaacat gagcttatac     15600
     ttacaagatc aagaaatgat ataaatgctg tgttgcaaac tccgctcaat gttgctgatc     15660
     cggccgccgc agcaacttgg gaagacttta aaatagtaat attgaagctt gaatggctta     15720
     tgccctatgt ggtaatgtca gattctcata aaattcgttt attaaattat ctgcaaaaag     15780
     ataagtttgt atctatgagt tttcgaactt gggaattata tgagtatccc ctcttaccta     15840
     gcacatcaaa acatatttgg acagttaaga catctaatca gttggaaaag ccacgttatg     15900
     ttattttagc ctttcaaaca aaccgaaaaa atcagaaaaa tgtaagcgct agcatgtttg     15960
     atcactgcaa tataagaaat gtgaaactct atttaaattc acaatattat ccttatggtg     16020
     atcttaatct cgatataaca cgtaatcagt atgcattgct atataatatg tatgctaatt     16080
     ttcaaaattc atattatggc aaaaaaaacg ccttcattag gcaaacatca ctttcttaat     16140
     cggatacctt taatcgtcct tgattgttcc aaacaaaacg agacattaaa aaatgctcca     16200
     gtcgatgtga ggctagaatt tgagtcgcat aacaatttcc ctgccaatac atcagcttat     16260
     tgcttaattt tacatgatcg tatcgttcag tatagtccaa tgagtgggga tgtcaagaaa     16320
     ctcatgtaaa gctatataaa cccgattcat gggctctgcg agcatcagtt tattctcagc     16380
     catcatggat aaaggccgga gtaacagctg gagtaaagaa gaagcagaaa ataaacggcg     16440
     gcaagaagag tgggaaaaat ttatgaagag aaacgagaag aaagatgtga aggttgaaaa     16500
     aacaaaatcg gtgggaaaaa aaatcaaaag ataaagactg taaaattgtt tgaaaattaa     16560
     tatgtttaat aagctttact ttaatcaata tgtcacataa accgagtacg agcaatttta     16620
     caactaatgt taagtatcaa aaaatctcaa ctaaggatga tgatgataga aacaagaaat     16680
     cttggctgaa aaacttcgtc gataagtatt caaccaacaa aggatcttgt cctaaaaatc     16740
     aaggttacga aaaaataaaa aagcaataaa attaaatatt ataattgcga aagatggagt     16800
     attttgtgga catgcaaggt ttcaagaaac cgggtaatga ttatgtgctc aaagaattgg     16860
     ctatccttcc gctcaatgct aacgatgcag aagcmcaagt atttcttttt aaagcaccct     16920
     tcagctggcg aaaattacca caaaagtata aacatgaaaa tttatacctt gaactttgct     16980
     atcatggact aacctgggac tcgggaaaaa ttgagtacac agagatagga aatattttac     17040
     gggagaatct tgaaaatgct acaaagatac ttgtcattgg agatctgaaa aaaaagtggc     17100
     ttgaaagatt tggctttaag gtcactgata tgacagacta tccaccgttc gaactcccaa     17160
     gattggttac tacttgcgct catcacaacg gagcctacaa atccatgtgt gctcttcata     17220
     atgtcaagcg aatgaaaaag ttttacttta atatggaatg ggttgatgtt gatgatgacg     17280
     atgataatga taatatagag ctgtaaaaat gtattgtatt ttaagaacaa catgtttaac     17340
     aaaatcgttt tgtaaatcat gtacattttt catttaatat aaactgattt taaaaataaa     17400
     acaaaaaatg tttaacaatt atttccctac cactccacat cctacattat catgcaacgc     17460
     gctcgctaac acaaaaaaag ttttgtatgc atataactac cacgtgcaca agctgcacac     17520
     ggtttcgcac attcaaacag cgcgcgcaaa tcagcgctgc agacgactta cgcacattgc     17580
     atcgcgcgca aactcaaact gcgttgcacg tcaccagctg gcgcacgcgg cgctacaggc     17640
     gctaatgcac attgcgcata aactcaaaca gcgcgcgcaa actcaagcag cactgcagct     17700
     ggcgcacgca acctcaagca gcgcacgcac aaggaatgcg aggaagccac agctcctgct     17760
     cgcccattgg ctgcagcagg gaccactcca cccgaaaaga ggggccgctc gccgcggaga     17820
     gggagtgggc cgaaatcgcc tggcgactcg agcccacctg ggccggaatc gccatagctt     17880
     atctact                                                               17887
//
ID   Polinton-2B_DSuz repbase;    DNA;    INV; 13002 BP.
XX
AC   .
XX
DT   09-JUN-2021 (Rel. 27.01, Created)
DT   09-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2B_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-13002
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 109-109 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 6-bp TSDs.
XX
SQ   Sequence 13002 BP; 4487 A; 2113 C; 2136 G; 4266 T; 0 other;
     agtagtaggg aaacgcgggt tctgggacaa ttagcatatt aatggccccc ggccccccct        60
     ccccccctca ttaacgtatg cgggttctgg gacaattagc ataatccaat aaattaactg       120
     attttaatgg gctttgaagt cataaaaatg tcgcgatcat gtctataaag agtatactta       180
     attgccccca tcgcccccac atccccatgt gacaatattg atcatgtatc cttcccctca       240
     ttatgtgcaa ttaatagtca ggtgagaaag gtgcacgtga gaaaggtcgc acaaccatag       300
     tatccaaagg ttgttatctt agaggaacat atccgatcat gttggggaaa ggtgtgatca       360
     cgtacccttt tgcctcatta tcacaggtgt tgctgtgcac gtgtgaaagg tcgcacaccc       420
     aaagtattca aagatggtta tcttagagga acatgtccga tcatgttggg gaataatgtt       480
     tcctatgatt gtaaaactaa tttagaaatc aaaagaaccc caataaaata aatctcacaa       540
     gttaatgatt ctcagatgtg gaatattttc aaatacacat ttttgtttcc gccccagaac       600
     gtttaactgg taaattgtct aagattctct cctttccaca aatgggtcat aaacatgtca       660
     taaaagggat tcaagcaaga gctacccgaa catgcgcacc tgtcaattac ctgaccgcaa       720
     taaaagggac acatgcacaa cccagaaggc gcacgctcat tgacaagatc atgggcctca       780
     cgccaacgac ctcatacgag ctcatacgac gttcccataa taggggttga aatcacgacc       840
     gcgcaacaac tcgcaagtag ccgacatatc tcagtcaagg aaatattttc cattctccgt       900
     acctgtaatt ttaactcgaa ataaaaagtc agaagtttat tttgtaccat aataatacat       960
     ttatttattt attttggtat tgcgaacaat tttgttatac atagaaatta attttctgct      1020
     ttgattccgg cgatttgcat agaagaagca ggcgcacgtt tccgacgtca tttctggatt      1080
     acaaaatgta aagtgttcac cataattcgt agttttgaga tcatgtccac ctcgattcat      1140
     gaacatagat tttgtgttta gaagatattg aaaatgctga ccagttatct ctcctttaaa      1200
     ttgttcaata aattggtcaa tttcctcatg aaatttcatt tcgttaattc tattttcttg      1260
     taggtcttta cacatctagt ctcaacttta aaatgatgta taacaattat tttatcgttt      1320
     tggagctact tttaaaaaat gtcaaaataa tgtacgcatt gtttagagca caaaccccgc      1380
     ccttaaggtg tgtttcacaa tagggaaacc ggtttccttt aaacctgttt aatgacggac      1440
     agcccatttc ctcgatatta atgagctgac gactcccaaa aaacttctgt agaaatcgtt      1500
     tcttttccac acctttacaa ataatttgtt ttccgcttgt aattgtcctt agatactttc      1560
     gagtttgtgg aaaactgttc tctccatcgt tccaaaaaat tttgtgatgt gtattggtta      1620
     acaaaattgc agtctttcga gattttgtat gtagcaaagt aaaatcatat ggtggttcta      1680
     ttaaaatact attattcaag tttggatctt tttcgaatac aattccaatt tcctttaaaa      1740
     taaaattatt attattatca aagaaacctt gaacatcaat cgaaacagta tcattcaaca      1800
     tttttctaat gttaaacaac tcgttgtact agtccgttta atgggttata ttcaactaaa      1860
     cggtcatgta tgaggagaca gtaagcttgg gtattttcat gacttggtgt cttcagttct      1920
     attgaaattc tcacatcaat aggaccagtt ttcactgatt cgttttgatg tgaaagatca      1980
     accacaataa taggggcctt caatttaaat tcattttggg tcaaaaatgc ttgtgattca      2040
     cgattatagt aactagattg aaaccttgta tacatttcat ataggtgagc atactgattc      2100
     ttactaaaat caacattcag attatcatat ggatatgact cagaattcaa gtgaactttt      2160
     aagtttgata agttatttgt gataagttct ccatttagtg taaatccaat tatggtaaat      2220
     cttggttttt cgcggttacc cgacaatttc acattccagc tgcgttgact tccatacccc      2280
     aatttggggt taacatatga atcccaactc cggaatgcga ttggtaggtt tacaccactt      2340
     ttaataatat cgtacatctt aatttttgca aaatcgctcg gagttacatg gggaattttc      2400
     caggttatat tcgtcatttc caacttaaaa gtttgttcat ttctggtttg ttcaaacaca      2460
     tcaccatgat tcttagttag catcaacact agttcatgtt tacaatttaa caaaactttt      2520
     ttataatctt cagcaaatcc caataaattt tttaatggta cagaaaagtt aaagtggggt      2580
     ccggtatata tttcatcccc actgctccat ccggaattta atagattttg actttgaaga      2640
     ttatccagag atataaaata ttttagggta gtactcatat tgatggacat ggacttgaca      2700
     cattggacac gttgtgttta gttgttatct agcagtattt tgacgcttac tttctcttta      2760
     gtcttgtttt tgggatggtt actttgtgta tggtacctgt aaagtacttg cttttggatg      2820
     attacttttt gtatagtatc tgtaaagtac ttggttttag atggtaacta actgttaaca      2880
     agtgttatga gttgttatag tttctggtta agaattatca aagcatacaa accaacttac      2940
     cgtgaactat aattacctga ccatcattaa agtcacatgc ccaagaccta aggagcaggc      3000
     cgtctgataa gttcatacat ctcaagacca ttgataaggg atgatgttcc gaccgtgcac      3060
     caactcggaa gtagccgacg tacctcattg aacaaaatac tttcccttca tccgtacttg      3120
     tagttttaat tacagtcaga aagaaatttt gtaggatcat ttaattttat tttatttaat      3180
     ttattattgt aaacatattt catttaattc ataatttaat atatattata tatattttta      3240
     tataattaat tttctaactc ctccttctgt aaaaaacgca tattttcgct tgcttcccat      3300
     agatagatgt aaaataattc ttacaaatta atgtttctca gatgttggat tattcttaaa      3360
     ccattcattt gttcagtcag aaacaaattt tataggatta tttaatatta ttttattatt      3420
     gtaaacatat ttcatttaat tcacaactaa atatatatta tatatatttt aaatatttaa      3480
     ttttctgact cctccctctg taagaaataa atgggttgtt aaccttcgtt ccaaacgact      3540
     attttcgctt ggttcccata gatagatgta aaataattct tacaatttaa tgtttctcag      3600
     atgttggatt attcttaaac cattcatttg ttcagtcaga aacaaatttt ataggattat      3660
     ttaaaattat tttattattg taaacatatt tcatttaatt cacaactaaa tatatattat      3720
     atatatttta aatatttaat tttctgactc ctccctctgt aagaaataaa tgggttgtta      3780
     accttcattc caaacgcata ttttcgcttg gttcccatag atagatgtaa aataattctt      3840
     acaatttaat gtttctcaga tgttgaatta ttcttaaacc attcatttgt tcagtcagaa      3900
     acaaatgtta taggatcatt taatattatt ttaatattgt aagcatattt catttaattc      3960
     ataattaaat atatattata tatattttta tataattaaa tttctgactc ctccctctgt      4020
     aagaaatata tgggttgtta accttcggtc caaacgcata ttttcggttg gttcccatag      4080
     atagatgtaa aattgttctc acaatttaat atttctcaga tgttgaatta tttttaaagc      4140
     attcatttgt tccatcccat aataatattg taatatattt cgaaagtctc gttagttagc      4200
     ataggagcgt ctttcaattt aatttctgat tcaagtttat gatagaggtt ttgggacctg      4260
     gtaatatcgg ttcttgttgt caactatttt tctagttcta gttttctaat tctattctat      4320
     ttgtatgagt aaggtatcat tgtctaagat tctgaataag tttaataagc tctttaatta      4380
     caatactgat tagctggtta ctatatattt agtagatgta tacaagttgt ttagtatctg      4440
     gtttctatat gtttaataga tgtatacaag ttgtttacta gatgtataca agtggtttac      4500
     tagctgttta gtatctggct actatatatt tagtagatgt atacaagttg tttagtatct      4560
     ggttactata tatttagtag atgtatacaa gttgtttagt atctggtttc tatatgttta      4620
     atagatgtat acaagttgtt tactagatgt atacaagttg tttactagct gtttagtatc      4680
     tggttactat atatttagta gatgtataca agttgtttag tatctggtta caatatattt      4740
     agtagatgta tgcaagttgt ttagtatctg gtttctatat gtttagtaga tgtatacaag      4800
     ttgtttacta gatgtataca agttgtttac tagctgttta gtatctggtt tctttatgat      4860
     tagtagatgt atacaagttg tttaatagat gtatacaagt tgtttactag ctgtttagta      4920
     tctggtttat gtatctttaa tatctgttta cttgatgttt actatttatt attagctggt      4980
     tactagttgc tattaaagtc tacgagcttt tatagtcttt tgttaagaat gatcaaaaaa      5040
     tcttgatcac tagacgactt tcaatgtgaa gtaaaaactt acactctgat ttttaatgtg      5100
     tttgctatga agaaagaaga aagaatgcaa agccaaatta tctcaagatt gatatataaa      5160
     tcttagagga acatgtccga ttatgttggg ggaagatgta tcctgtgatt gtaaaactaa      5220
     ttaagaaata aattgttcac aagttgtcta aaagctgtgt agaagctgtt ttgataaaca      5280
     attttgattc ataatgacag atattaagaa tatataataa tatcatccac tttaactagt      5340
     atattgttaa aataaaacat ttccattttt catgttcttt catcttatgt aggtataata      5400
     aatgtaatct taactacgat agctagcctt acatcccata acttagttat tagctacaat      5460
     aaaatgtcta gaaagaacaa aatatatgaa tgtcaaaaaa cgatttaaaa ctaactatat      5520
     ttgggaaagt aattgaaatc gctccggcgt aatacaataa aaaacaaaaa acactgtgat      5580
     tatcccattt tctatcacca taacaaatga gtatactcac acctaaatga ccaattgtat      5640
     cctttgtcca aaatgtctgt gactttcact tataaatttg tcaccgataa tttaaatccc      5700
     attaagcaaa ccacccattg ctaaccgtgc cataacccca gagtcaagtt ggttacctac      5760
     aataaacaca ggttatggtg taaaggattg ctaaaatgcc tcgacgcagg cgcaaaggtc      5820
     aaggtaatgg aaaaaattca tggaatatta tcccttcata aaaaaagtca taaaaaatat      5880
     aataaggaaa gtatttttta tttgcgaacc atttataact gttaccaaca acacaaatag      5940
     aagtaattga aatcgctccg ccgtaataca gtaaaaacaa aaaaaccata tcctttgtcc      6000
     aaaatgtctg tgactttcac ttataaattt gtcaccgata atttaaatcc cattaagcaa      6060
     accacccatt gctaaccgtg ccataacccc agagtcaagt tggttaccta caataaacac      6120
     aggttatggt gtaaaggatt gctaaaatgc ctcgacgcag gcgcaaaggt caaggtaatg      6180
     gaaaaaattc atggaatatt atcccttcat aaaaaaggtc ataaaaaata taataaggaa      6240
     agtatttttt atttgcgaac catttataac tgttaccaac aacacaaata gttatgttac      6300
     aagggttccg aaaaagtcca cagcgaaggt gcaaaagtaa gcacaaacaa taaaaaatcc      6360
     ttggaagatt ggaaaaacaa aattttaaat ttaagtggaa taacactctc aaaactaata      6420
     caagggttag tcataaattg cttgccagca ctaacagtat ttaaagagct gtttgctgct      6480
     tgataaccca ggcagaacac cagaagacat cacagcagaa agatgaccga aattcctagc      6540
     gacatcactg aaatgcgcgc tcgcctgagc gagcaaaggc gcgagtgggc cgcgaaagga      6600
     gagccctacc cgacagaaga atgggcacgc caagaggtgg aagcgctgca ggaagaagca      6660
     gagcatcagt attgggagga actcccacta ttagacgcgt tgaggaccac tgcgtttcag      6720
     ctccggaggg ttctatcgaa tcgtccggta aacgaggata ggttgctcgc gctggtagat      6780
     cgccaggagc aaaacatgct aaactatgaa gcatggatgg cgacccacga gaggataaag      6840
     gaagaggcgg actggtacac cgcagtgtac aaaggcctgt tccggaaccc attgttcccg      6900
     agctttcccg tcaccaggcg gaggagcgtc cgcccaggta tgggcttatt cccgaccgag      6960
     gagcggagac agcaggcggc tgagagagag gcggaggagc cactcttccc gggagaaggc      7020
     acattccgcc gattttcatt ctaagggaaa ttaagcaatt agaaaacaaa aaaaaaaaaa      7080
     ataaataaat aaaataatta taaaaataaa aaataataaa taaaagaaat atataaaaag      7140
     tacaaaaaac agatattacc aggtcccaac gtgccttcgt cgaggcattt tcggaaccct      7200
     tgtaacataa ctatttgtgt tgttggtaac agttataaat ggttcgcaaa taaaaaatac      7260
     tttatttatt atatttttta tgaccttttt tatgaaggga taatattcca tgaatttttt      7320
     tgggatttaa attatcggtg acaaatttat aagtgaaagt cacagacatt ttggacaaag      7380
     gatacaattg gtcatttagg tgtgagtata ctcatttgtt atggtgatag aaaatgggat      7440
     aatcacagtg ttttttgttt tttattgtat tacgccggag cgatttcaat tacattccca      7500
     aatatagtta gttttaaatc gttttttgac attcatatat tttgttcttt ctagacattt      7560
     tattgtagct aataactata gttatgggat gtaaggctag ctatcgtagt taagattaca      7620
     tttattatac ctacataaga tgaaagaaca tgaaaaatgg aaatgtttta ttttaacaat      7680
     atactagtta aagtggatga tattattata tattcttaat atctgtcatt atgaatcaaa      7740
     attgtttatc aaaacagctt ctacacagct tttagacaac ttgtgaacaa tttatttctt      7800
     aattagtttt acaatcacag gatacatctt cccccaacat aatcggacat gttcctctaa      7860
     gatgtatata tcaatcttga gataatttgg ctttgcattc tttcttcttt cttcatagca      7920
     aacacattaa aaatcagagt gtaagttttt acttcacatt gaaagtcgtc tagtgatcaa      7980
     gattttttga tcattcctaa caaaagacta tgaaagctcg tagacgttaa tagcaactag      8040
     taaccagcta ataataaata gtaaacatca agtaaacaga tattaaagat atataaacca      8100
     gatactaaac agctagtaaa caacttgtat acatctatta aacaacttgt atacatctac      8160
     taatcatata gaaaccagat actaaacagc tagtaaacaa cttgtataca tctactaaac      8220
     atatagaaac cagatactaa acaacttgca tacatctact aaatatattg taaccagata      8280
     ctaaacaact tgtatacatc tactaaatat atagtaacca gatactaaac agctagtaaa      8340
     caacttgtat acatctagta aacaacttgt atacatctat taaacatata gaaaccagat      8400
     actaaacaac ttgtatacat ctactaaata tatagtaacc agatactaaa caacttgtat      8460
     acatctacta aatatatagt agccagatac taaacagcta gtaaaccact tgtatacatc      8520
     tagtaaacaa cttgtataca tctattaaac atatagaaac cagatactaa acaacttgta      8580
     tacatctact aaatatatag taaccagcta atcagtattg taattaaaga gcttattaac      8640
     ttattcagaa tcttagacaa tgatacctta ctcatacaaa tagtatacaa atagaataga      8700
     attagaaaac tagaactaga aaaatagttg acaacaagaa ccgatattac caggtcccaa      8760
     aacctctatc ataaacttga atcagaaatt aaattgaaag acgctcctat gctaactaac      8820
     gagactttcg aaatatatta caatattatt atgggatgga acaaatgaat gctttaaaaa      8880
     taattcaaca tctgagaaat attaaattgt gagaacaact ttacatctat ctatgggaac      8940
     caaccgaaaa tatgcgtttg gactgaaggt taacaaccca tatatttctt acagagggag      9000
     gagtcagaaa attaattata taaaaatata tataatatat atttaattat gaattaaatg      9060
     aaatatgttt acaataataa aatattaaat gatcctataa catgtttctg actgaacaat      9120
     gaatggttta agaataattc aacatctgag aaacattaaa ttgtaagaat tattttacat      9180
     ctatctatgg gaaccaagcg aaaatatgcg tttggaatga aggttaacaa cccatttatt      9240
     tcttacagag ggaggagtca gaaaattaaa tatttaaaat atatataata tatatttagt      9300
     tgtgaattaa atgaaatatg tttacaataa taaaataata ttaaataatc ctataaaatt      9360
     tgtttctgac tgaacaaatg aatggtttaa gaataatcca acatctgaga aacattaaat      9420
     tgtaagaatt attttacatc tatctatggg aaccaagcga aaatagtcgt ttggaacgaa      9480
     ggttaacaac ccatttattt cttacagagg gaggagtcag aaaattaaat atttaaaata      9540
     tatataatat atatttagtt gtgaattaaa tgaaatatgt ttacaataat aaaataatat      9600
     taaataatcc tataaaattt gtttctgact gaacaaatga atggtttaag aataatccaa      9660
     catctgagaa acattaattt gtaagaatta ttttacatct atctatggga agcaagcgaa      9720
     aatatgcgtt ttttacagaa ggaggagtca gaaaattaat tatataaaaa tatatataat      9780
     atatattaaa ttatgaatta aatgaaatat gtttacaata ataaattaaa taaaataaaa      9840
     ttaaatgatc ctacaaaatt tctttctgac tgtaattaaa actacaagta cggatgaagg      9900
     gaaagtattt tgttcaatga ggtacgtcgg ctacttccga gttggtgcac ggtcggaaca      9960
     tcatccctta tcaatggtct tgagatgtat gaacttatca gacggcctgc tccttaggtc     10020
     ttgggcatgt gactttaatg atggtcaggt aattatagtt cacggtaagt tggtttgtat     10080
     gctttgataa ttcttaacca gaaactataa caactcataa cacttgttaa cagttagtta     10140
     ccatctaaaa ccaagtactt tacagatact atacaaaaag taatcatcca aaagcaagta     10200
     ctttacaggt accatacaca aagtaaccat cccaaaaaca agactaaaga gaaagtaagc     10260
     gtcaaaatac tgctagataa caactaaaca caacgtgtcc aatgtgtcaa gtccatgtcc     10320
     atcaatatga gtactaccct aaaatatttt atatctctgg ataatcttca aagtcaaaat     10380
     ctattaaatt ccggatggag cagtggggat gaaatatcta ccggacccca ctttaacttt     10440
     tctgtaccat taaaaaattt attgggattt gctgaagatt ataaaaaagt tttgttaaat     10500
     tgtaaacatg aactagtgtt gatgctaact aagaatcatg gtgatgtgtt tgaacaaacc     10560
     agaaatgaac aaacttttaa gttggaaatg acgaatataa cctggaaaat tccccatgta     10620
     actccgagcg attttgcaaa aactaagatg tacgatatta ttaaaagtgg tgtaaaccta     10680
     ccaatcgcat tccggagttg ggattcatat gttaacccca aattggggta tggaagtcaa     10740
     cacagctgga atgtgaaatt gtcgggtaac cgcgaaaaac caagatttgc cataatggat     10800
     ttacactaaa tggagaactt atcacaaata acttgtcaaa cttgaaagtt cacttgaatt     10860
     ctgagtcata tccatatgat aatctgaatg ttgattttag taagaatcag tatgctcacc     10920
     tatatgaaat gtatacaagg tttcaatcta gttactatag tcgtgaatca caagcatttt     10980
     tgacccaaaa tgaatttaaa ttgaaggccc ctattattgt ggttgatctt tcatatcaaa     11040
     acgaatcagt gaaaactggt cctattgatg tgagaatttc aatagaactg aagacaccaa     11100
     gtcatgaaaa tacccaagct tactgtctcc tcatacatga ccgtttagtt gaatataacc     11160
     cattaaacgg actagtacaa cgagttgttt aacattagaa aaatgttgaa tgatactgtt     11220
     tcgattgatg ttcaaggttt ctttgataat aataataatt ttattttaaa ggaaattgga     11280
     attgtattcg aaaaagatcc aaacttgaat aatagtattt taatagaacc accatatgat     11340
     tttactttgc taaatacaaa atctcgaaag actgcaattt ggttaaccaa tacacatcac     11400
     aaaatttttt ggaacgatgg agagaacagt tttccacaaa ctcgaaagta tctaaggaca     11460
     attacaagcg gaaaacaaat tatttgtaaa ggtgtggaaa agaaacgatt tctacagaag     11520
     ttttttggga gtcgtcagct cattaatatc gaggaaatgg gctgtccgtc attaaacagg     11580
     tttaaaggaa accggtttcc ctattgtgaa acacacctta agggcggggt ttgtgctcta     11640
     aacaatgcat acattatttt gacatttttt aaaagtagct ccaaaacgat aaaataattg     11700
     ttatacatca ttttaaagtt gagactagat gtgtaaagac ctacaagaaa atagaattaa     11760
     cgaaatgaaa tttcatgagg aaattgacca atttattgaa caatttaaag gagagataac     11820
     tggtcagcat tttcaatatc ttctaaacac aaaatctatg ttcatgaatc gaggtggaca     11880
     tgatctcaaa actacgaatt atggtgaaca ctttacattt tgtaatccag aaatgacgtc     11940
     ggaaacgtgc gcctgcttct tctatgcaaa tcgccggaat caaagcagaa aattaatttc     12000
     tatgtataac aaaattgttc gcaataccaa aataaataaa taaatgtatt attatggtac     12060
     aaaataaact tctgactttt tatttcgagt taaaattaca ggtacggaga atggaaaata     12120
     tttccttgac tgagatatgt cggctacttg cgagttgttg cgcggtcgtg atttcaaccc     12180
     ctattatggg aacgtcgtat gagctcgtat gaggtcgttg gcgtgaggcc catgatcttg     12240
     tcaatgagcg tgcgccttct gggttgtgca tgtgtccctt ttattgcggt caggtaattg     12300
     acaggtgcgc atgttcgggt agctcttgct tgaatccctt ttatgacatg tttatgaccc     12360
     atttgtggaa aggagagaat cttagacaat ttaccagtta aacgttctgg ggcggaaaca     12420
     aaaatgtgta tttgaaaata ttccacatct gagaatcatt aacttgtgag atttatttta     12480
     ttggggttct tttgatttct aaattagttt tacaatcata ggaaacatta ttccccaaca     12540
     tgatcggaca tgttcctcta agataaccat ctttgaatac tttgggtgtg cgacctttca     12600
     cacgtgcaca gcaacacctg tgataatgag gcaaaagggt acgtgatcac acctttcccc     12660
     aacatgatcg gatatgttcc tctaagataa caacctttgg atactatggt tgtgcgacct     12720
     ttctcacgtg cacctttctc acctgactat taattgcaca taatgagggg aaggatacat     12780
     gatcaatatt gtcacatggg gatgtggggg cgatgggggc aattaagtat actctttata     12840
     gacatgatcg cgacattttt atgacttcaa agcccattaa aatcagttaa tttattggat     12900
     tatgctaatt gtcccagaac ccgcatacgt taatgagggg gggagggggg ccgggggcca     12960
     ttaatatgct aattgtccca gaacccgcgt ttccctacta ct                        13002
//
ID   Polinton-2_ACe repbase;    DNA;    INV; 14167 BP.
XX
AC   .
XX
DT   25-MAY-2012 (Rel. 19.03, Created)
DT   25-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton DNA transposons from Atta cephalotes, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_ACe.
XX
OS   Atta cephalotes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Atta.
XX
RN   [1]
RA   Suen G., Teiling C., Li L., Holt C., Abouheif E.,
RA   Bornberg-Bauer E., Bouffard P., Caldera E.J., Cash E. et al.;
RT   "The genome sequence of the leaf-cutter ant Atta cephalotes
RT   reveals insights into its obligate symbiotic lifestyle.";
RL   PLoS Genet 7(2), e1002007-e1002007 (2011).
XX
RN   [2]
RP   1-14167
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Atta cephalotes genome.";
RL   Repbase Reports 14(3), 538-538 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to the consensus.
XX
SQ   Sequence 14167 BP; 4304 A; 2995 C; 3190 G; 3675 T; 3 other;
     tgagtccgtc tgattcgatt agagcactgg tctctccagg tttcaccatt tccataacgt        60
     gtaagttctt taaaaaaata agttagtcga atatagagag ttagttatat acagagttca       120
     aaaataataa taacaaaaat tactttttag cgcaggaaat cgaacaagat cgggaggaag       180
     atgtggagtc tggggaggag gaggaggaag aggaggagga ggaggaggag gaggaggagg       240
     aggataatga ggacgatatc gataatgttt tgatgatgat gatgatgata atgaggagca       300
     ggacaacgct aatgctgagg acagcgttga tgacaacggc gatgatgagg aggaggagga       360
     aatacgtgac gagatagaag cgactcagga ggcaatagag gaagaagaag aaaacagata       420
     ttacgcacct cttgaaaatg aaggtaataa tatttttact ttttacttta aatttgcttg       480
     ttgctcgaga tacttaaaca gatattttta tcagatattt cgtattctcc tgttctgcct       540
     atgtcgccgg aatattaaaa atttgcaaat aagaaaaaca ttatccgccc acgtacgatc       600
     atgtaaacag ctgtaggtga gttatcttgc catgctgtaa tgttacgact agtagtataa       660
     gtttctgact taatatatat agcgatgtta tcgcagatta ataaggtttg tttaactttt       720
     tttacagtac aaactggcgg tggtaccgac catcctactt ccgcggttgc ttctacatcg       780
     cttctgcatg caagggaaga aaacgccttg gaagaagaat cctcgcaaaa tttcgaggac       840
     tccatcgacg atgatcatca tcagcagcag cagcagcagc agcagcaacg gcaacagctg       900
     catcatcatc gggaggaaaa taatcatcac cggccggatc aacaacagga ggttagagat       960
     aactttgctt ttatcgagtt aagggcggaa aactcgcgtc ggtttagaaa ttttgcgata      1020
     ctagggaggg aggcaacttt cgcgatacgt ccgccacccg aaggtacaga tatcgttcgt      1080
     tggatagaaa gcgcgttccg tgaaattcgg gtgtatgcac tacattcgtg cgaaccgaac      1140
     gattacgtag gattatcgtt cgagtcggcg gatctagcgc gtggtccggc tggtctatcg      1200
     tttcgtccag cacgcgattt aactcatgag gacatatggc aactcgtgag ttcgctggcg      1260
     caaagtgctg gaggattcga tatcgcagaa aattttacaa tacgcgtttt caaagtctca      1320
     gtaccagccg gtcgcgggcg tcaatctaat cgattaactc gcgaagatgt agccaaacgc      1380
     tcgattttgc aaataaacaa tacagacaat ttgtgttttc cccgttcgct cgtagtggca      1440
     cgcgtgcatc aagagcgtgg gcaactgcgt acgggggaac tgcaagaaag atgggaatcc      1500
     gtgagatacc agcgttcttc gttacagcgt aagctggccg aagaattaac gaaagccgct      1560
     ggtatcacga ttcccgagga aggttgtgga attcgcgaaa tcgagcaatt ccaacggatt      1620
     ctcgcttccg aaaatattgc aattatgata tataatttca gtactttcgg tcgaggcgag      1680
     aatccgatgt acgacggctg cgttactttc ctccctaggt cgcgaaccct cgtgtcgttt      1740
     aaatataatg tattacgagg gctcgcgaca ttataatcct atattaaata taaaagccgc      1800
     cgccggttct cgcggaggat attgcgtgca acgtgggctt tcgtaacgac agaggtcatc      1860
     gatgcacaaa aaaatgccca cgctgctacg ccatcccgtc ttgcgaacgc cccgacgttg      1920
     agttgattaa gtgcgattcg tgcgttcgcg tcttcttcgg gcgtgcatgt ttcgaacgtc      1980
     atcgagcgca gggatcatat aatcaatccc tcgcaagcgt ttgcgaatcc attaaaattt      2040
     gtaacggatg cgggcgattg gttaattcaa aatcgcgaca cgattgcgac gtagtttatt      2100
     gcaaaacttg ccgatcgtta cagtcttcga atcatttgtg ttacatgcgg cctctttgtc      2160
     gtaaagcctc agtagaaaac cttggagagg gtacgagtac tgtagcatcg cgagaagaaa      2220
     atccgcaaac aaatacgaat gacgtcgaag acacggtcga gtgtgttaaa agagatcgcg      2280
     tcgcattcgt gttttatgat ttcgaaacgc gacaagacga gacgctcgaa ggaacggaga      2340
     acgtaagaat tcacgttcca actctctgcg tcgcgcaaca aatttgcgaa gcgtgcgcgg      2400
     gaatagaggt catgtcattg cgatgtcgtt ggtgtggagt gcgcgaattc atatttagta      2460
     gtgatcccgt aaaagagttt gtcgatttcg cgacgcgaac atctaaatat ttttaaaaaa      2520
     tcatctgtat cgcgcataat gctaaagcat ttgacgctca gttcatttta aagtacctcg      2580
     ttgaaaagtc gggaataacg gaagaacctc ggatgatttt gaacgggacg aaaattatcg      2640
     ttatgacgat tggtcgtaca aaatttattg atagttcaaa ttatatacct atgcgtttag      2700
     ccgatttacc caaggctttc ggactgcggg atactttggg taaaggtttt tttcctcatt      2760
     tgtttaatac gctgcaaaat caaaattata ttggaccaat acctgacgct cgatattatt      2820
     cgcccgagca aatgaaaccc gaggaacacg agcgttttat ggtttggcac gaggaaatgt      2880
     cgcgatcgaa tttcgttttt gatttcaaac aagaaatagt aaaatattgt cggaatgacg      2940
     tagatatcct tcgacgtgcg tgcatggcgt tcagaaaaat ctttttagaa cgcggagatg      3000
     tgtgtccgtt tgtagaatgc acgactatcg cttccacatg tatgaaagtt tttcgcaaaa      3060
     actttttacg cgaggaagaa ataggaatca ttccaccggg cggatataga tataaagaca      3120
     atcactcgca caaagcacta cagtggttag tgtggatgga gcgtgagctc ggacatccta      3180
     taattcatgc ggggcgaggc cgcgagtatc gaattgccgg tacgcccgtc gacggatatt      3240
     acgaagtcga atcagcgaac gagacgttgc gttacgtgtt acaatttcat ggttgttttt      3300
     ggcacggttg tcccaactgt taccaaatca atcgtgaaag gaaacttacg tccggggcat      3360
     cacgcgaaga tacaatcgat gctcgatacg aacgaactct cgcaatgaca tggcgtcttc      3420
     gacaacgcgg atatagagtg atggagaaat gggagtgtga atttgcacga gaaaagcgcg      3480
     agaatcgcga gatgcacaat tttctcgaaa accatccgat gctaatcaac cctcctctcg      3540
     accctcgcga ggcgttcttt ggtggccgta cggaaaatat cgtaacccga tacgaagtta      3600
     cgggtacgga gaaaatacgt tatgtggacg tgtgttctct gtatccgtac gtattgaaaa      3660
     cgggtacttt tccgttaggc caacctacga tttatatcgg agaacaatgt tcggagttaa      3720
     ttggcgtagc tccgaatttt aatttkgatt ctgtcgaggg tatcattcgg tgcacagtac      3780
     ttcctccacg cgatctcttt caccctgtac tcccgtaccg cgtacaaggc aaattgttgt      3840
     tcgggctgtg tcgtagttgc tgcgaaacat tctcgcaggc cgagtgcact cacgatctcc      3900
     ccgccgatcg tgaattcgta ggtgcatggg tatcctgcga attgcgcaaa gccctcgaga      3960
     aaggttatct cgtgacgaat gtgagcgaaa tatggcaatt tagagtcaca cgattcgatc      4020
     cttgtacgag gcaaggtggt ttgtttgccg aatatatcaa tagttttttg aaattaaagc      4080
     aggaagctag cggatggccg agcgaatgcc aggatgacga gagtaaggaa cagtaccttc      4140
     gggaatacga agaaactgag ggtattgttc tcgatagaaa taatatcgtt cgaaatcctg      4200
     gtttacgttc ggtcgcgaag ctctgcttga attctttctg gggtaaattc ggccaacgaa      4260
     ccaatttgcc taatacagag atcgtaaaaa aatacgaacg tttggcaacg ttgctcacga      4320
     gttcagagca cgaaataacc aatatattac ctgtcaatga cgagataata tatgtttcgt      4380
     ggcgactacg cgaagagacg gtcgcgcctt ctccgcaaac caatcctgta atcgcggcat      4440
     ggacgacgtc acaagcacga ctgatattat acgaatatct agagaaatta ggtagtcgcg      4500
     ttttatattg tgatacagac tcgtgtattt acgtaagcag aggcgaaccg agcgagtacg      4560
     agccgcgtac ggggaatttt ctgggcgata tgacggacga actcgagagc tacggacggg      4620
     gcagttttat cgagtcgttc gtgtccgggg gcccgaaatt ctatacgcgt acgtcgttcg      4680
     tacaccggaa ggtaaccgac acgagatttg taaagttaaa ggaataacat taaattataa      4740
     gaactctcga attataaatt ttaatagtat taggaaatta ataatggata atgaaagaga      4800
     aaggcgcgat gaagaagaag aagaaacggg agaggcagca ataaatttga gttttagcgc      4860
     aatccggcgc accgtgtttc acgaaatcgt aacgcgaaac gaaacaaaga cgtgcgcacc      4920
     ggtattggta aaacgcaaat ttattaataa tcgctattcc cttccgtatg gtttcaggag      4980
     agaataacga tcttcttctt tttctttctc tcacttatat tttaagctca tgagttttcc      5040
     gcctatttgc gtagtattta agtattatgt aagaaaaaac ttgaatttaa gttttttgta      5100
     aataataaaa tataagtatc tctcttttgc aaaaaaatat ttttattaga attttattga      5160
     atgatttaat gtaaaaatgt aaaaacataa aaatgtaaat attgtttctg aataattgaa      5220
     ttttttgtgt aagagttagc aaaaatataa tcaacataaa aaaattaaaa ttatatatgt      5280
     ttccttttca tccttcctct tttttaaaaa aagtatcgaa taaaaaatat tttgtacttg      5340
     aagaaaacaa gaagaggtga tttattatat aattctaact agcctttccg atttttctac      5400
     gaaagctttt ccctcgctgc ggcatcagag taagmttact cgtcggcgat gccacgcgct      5460
     cacttaacga taaaaatata cgctgatcgc gagcctcttt gacgcgaaga taagcttatg      5520
     cgcgtcgcac cgcggcgaga tcagcttttc gccccgccgc ggtggtcttc gctgacaagc      5580
     tcacgcgggg gtacgctgac gcgagcgctc gtccgccgcg tgggggcctc cgtcgcgatg      5640
     atcagcttat cccccctgtc cccctcctaa aattatttcg tttcgcgaat ttctattcta      5700
     gaaatcaaac gacgtttttt tctttttgct tttgaagtcg cgcacggaga tcgatcattc      5760
     atttcgtaaa atggacgtgc gctggaaaca tccttggacg tcgatcgtat gcggaccgat      5820
     cggttgcggg aagacgatct ttgtgaaggc ttttctccgg catttatctc tcatgtccga      5880
     cgtgcgcttt gagagagttt tgttttatta cgcggaatgg caagaagcct atcgtcaatt      5940
     acaatacgac acacgtgtaa aagaattcga agaacagcgt tggggatgca gcaatactaa      6000
     aacgacgaag aagaatataa ttgaatttcg cgagggatta ccactccgga agattattcg      6060
     aacgatcctc tttctccgaa attagtgata atcgacgatc ttatgagaga atcgtcgtgc      6120
     gatcgtggat ctttttatca aaggcagtca tcacaagaat ctcagtgtta ttcttatctc      6180
     gcagaatcta ttccatcagg gacgtggcca gcgtgatata tcacttaacg cgaattacat      6240
     cgtcgttttc aaaaatccac gcgatcgcgc tcaaattcgt catttagcgc gtcaagtcta      6300
     tcccgacgat ccgaaattct tagaagaggc atactatact acgacgccac atcgagaccg      6360
     ggtatttgtt gctcgatctg aaacaatcaa ccccggacga gtatcgattt cgaacgtgta      6420
     tttttcccga ggatacgatt cattacgtct acgtgccgcg tagatcattt tccagcggat      6480
     tcgtataaaa gttgagaacg ggtaatcgta tgtgtcagtc gtagattttt ttctcgcgat      6540
     gaaggtgagt gacgagaaat cgcacagagc gacgaaaatc gccacacatt cgatcggtaa      6600
     gagaaacgcc tgtctcctcg cagcgctcta tcatttgaac aaaattcaac gcacaacctt      6660
     cttgcgcaac gctgacgaaa aactaattcg ttgtatctgt gaatgtgttt ttaatacact      6720
     caaaggtaac gtctcgctcg aacggtgtga aaaaaatcgg ttaacgaaat acaaaaaggc      6780
     tctgcgtcgc gtcgttgcaa aacgtggtaa ttggaaggat aaaagaaagc tgttggtgca      6840
     gcgaggcgga tttttacctt atattatcga ccttattatc actaattatc gaagaaacga      6900
     aatagtaggg ataaaacgtt atggagaggg ctaaaaaaat ggttttaatt tcgacggaaa      6960
     atctggagag aatgcatcat cagttacgtc aaaatccgac atcattcgtt gacggagagt      7020
     caaaagaaat aacagtaccg caaaattcgg ataacatctc gagcactaat aatacagcgc      7080
     aaaccccggg aactcatcta acacgactcg atgcggagat gagtcgtatt cttaattccg      7140
     gctggccgcg tgacgaaagt gagaggtgga aaatgtacag agaggcatta tggcgatacc      7200
     tacgatttat ccaagaaacg cgaagacaga aagacgtacg taacgaaaac gaaaatgcag      7260
     aagacaatgc tacacgagat gcctccgctg ataacgagac gacgacggcg tttttcacga      7320
     tctcacgcaa acatccgata taccaccgcc atcacattcc attaataaca cagatattat      7380
     tacgaaaaat ttcgaaattt cgagcgagca taatcatacg atgaaaagca tcgaggaaat      7440
     actggaaagc gtaccgaaat cttatcgtaa gcatgcacac ttactgatga aacatttgtt      7500
     tcgaaaagct gtgcctgata gaattagttg ggacgagcat ggaatcgtga ctatagatgg      7560
     caacgtcgtg aaagattcga atatcgctga cttaataaac gatgcaatgc gcgagagaaa      7620
     aactgtgaaa gcagcgggta gaaatcagtt tgcacgatta ctccgtgtgt tgaacatacc      7680
     ttctgcactg gtgagaaata aaagattatt gtccacgcac ggtgttgctg taaacaatgt      7740
     aaaacttcga cctcgcgcga gttccacgcc ttttatatcg aaagcgcgag ttccacgtcg      7800
     attgtatcga gagcacgagg aaggagaaaa acgtaaaaat tacgaacaag aaatagacga      7860
     ggaaagttcg ttgattcttt ctcacgtaca tgaaaaacwg atacccccgt atctttgcaa      7920
     acgggaaaaa atcggttact cggttggaaa aaactgagat aacgatgaca tttgaaaaac      7980
     tatactacga tccgtcgcat tatgcgagct attcggcggt ggataatcta actcgtgccg      8040
     ttaaaccgaa tttctcgcgg ggagaagtcg tacgctggct cgaatcgcaa gacgcgtaca      8100
     cgttgcaccg accattgcgc agaaaatttc cgcgattgca ttacaacgta acaaacattg      8160
     acgatgtgtg ggaggcagat ttgatcgaac tccgaaatct aaaaagttac aatgacggtt      8220
     attcctatct gttagtgatt atcgatgtac taagtaaata cgtctgggta gaaccgttac      8280
     gcgacaaaac gagtaactgc gtgataaaag ctttccatcg cgtactagcg aaaagcgaag      8340
     gacgagtacc cgtatacttg caaacggaca agggcaaaga atttgtcgca caatcaatgc      8400
     agaaatttct taaagaaaac gacatacgtt ttcgggtaac gcgcaatccg gacattaaag      8460
     ccgccatcgt cgagcgcttc aacagaacac tgaaagagcg aatgtggcgt tacttcacgc      8520
     ataaaaactc gcgacgctac atcgatgttc ttcaggatat tgtacgcgct tacaatcaca      8580
     cgcgtcactc gtccacgaga atgcaaccag cagtagtaac gagagaaaac gcacgtatcg      8640
     ctcgtgaaaa tatagctcgt cgttggaaaa acgaaacgtt aaagaaacgt gcgcgaaagg      8700
     ttaaatatcg cgtcggagat ctcgtatcag tagagcgaaa ggcgccttcg agaaaggata      8760
     cgaggctaag tggagcgagg agatatttca aatttaccgt gttctcgatt ggcgaaaccc      8820
     tcacgtgtac gaactgcgag atttagcaga cgaagtcata gacggtattt tttatgagca      8880
     agaattaact cgagttgaga aaaacttaga ggaagaacag tttatcgtcg atcgcgtgat      8940
     aaagagtagg ggacgaggag ctaataagca agtgttagtt agctggcgcg gttatcccag      9000
     taagtttgat acttggattc cggcttcgag tttaatttct cttcgcgatg gaggaggaac      9060
     aatttcttct ggtacttccg agtaacagca gtatgcgtca ttttccggat aatacaacat      9120
     cgtcctttat cacggaatta cctcactcta tagtgttaca tgggcaatgg gaggttgcga      9180
     taagcgagat tcaatttccc tgtagctttt tacacgtacg tcataacgaa aatgtgatca      9240
     gattcgtcga tgttaaaccc gatgagggga cgaatggtgc gtttacggca aaagaagtta      9300
     catttccaaa tggaatttac aacgatatcc atgagcttat tgatgcgatt aataccgcgt      9360
     gtaaagttgc cgaatcgcat ttttatttcg aacagcaaaa agcgtctggc ggtaaagtct      9420
     tgataagtat taactgcgat gagaaatgca aaatgctaca tcatataaac ttttccgata      9480
     atcttctacg aatgctaggt ttcgcatcag caatttccag taaacaccaa ttttattcca      9540
     agctcgcgat acgtaaacct aattcgaatg aaacagaaga gaaaactttt cttactcacg      9600
     gatttaataa ggagacggga aaacgacttg cagacggtta ctggagtagc gagccctgta      9660
     gtttgtggcg cggtatcccc gataaaatgt tcgtttattg cgatatttgt gagcctatat      9720
     aacaggcgat gtacgtactc ctcttctcag gatagttccg gtcgagatac gcagtcataa      9780
     ttacgcattt ggtgcaaatt tggtgaagca tttctcattt ccaaattata tcccattgcg      9840
     acgaacgaat ttcagaacga tcgaaataga tataagagat catcttggaa aaaaaattcc      9900
     attcgaattc ggaacgctga cagtgacgct gcactttaaa cgtaagcaat aactttcttt      9960
     cttccgtgta cgcgagtgtg actagtgtag tctttagtta ggaactaacg atggaatatg     10020
     aggagtattt tgatgcgcgg gacaccggta gcagaggtgg aattccacgt gttttcgtcg     10080
     gctcgcccta ccagcgcgga catggaatcg gaagctttct cggcgggtta tttagaaaaa     10140
     tactacccta tctaaataaa ggtgcacgtg ctgtcggtaa agaagcttta cgtgcgggaa     10200
     ttaacgtaat agaagatgtc gaaaataata aaccgttaaa ggaagcggtc aaaagtcggc     10260
     tcgcggaatc gcggggtaat ctgaagagaa aagccaaaga aaaaataagt tccctgatga     10320
     agggatcggg atataaaata tccgcgaaat ccgcggcgct tcagtttcca cccggtggtc     10380
     gagatagacg tatcgtgcat cgtaaacgac gacgatcaaa agaaaatcat cgagaagtac     10440
     acagggaaga agagcaaaaa agtaacgaag aagaaaaaga aaattcgtgc tacaggaaga     10500
     aagacgaaaa aatcatccgc taggaaacat cgagtcaaga aacgcgacgt atccgacata     10560
     ttctcttaat tgagataaga attcgtggct gaagaaaaag catgtctttt cttcataccc     10620
     actcgagcga gtgtataaag agcgaactcg atctcttctc tctgcctcct acgcaaacca     10680
     gcattgagag ttcgcaatgg atttattaca aacccgtaac ttcgctcgcg gacgactcgc     10740
     ccatagaatt cgtcataccc ggacatggag aagactatct agacctcact cacaccatgt     10800
     tgagccttcg catacgcgta gaaagcgaac gcggggagag cacatcggtc gcacccgacg     10860
     gcagggcaaa agtaggaccc gtaaatcatt tactgcattc catgttcaac caaatcgacg     10920
     tatatttcaa tcaaaagctc gtatcgccac caaacaacgc ttacgcgtac cgcgcgtaca     10980
     tcgaggcgtt atgcttcacc cgcaaaaacc tcccatctaa cttcttgctt atgggacgcg     11040
     gatatccctg gttacatgga cgacacatta gactcgtcaa atccaaatac agcgctcgag     11100
     agacgcgcgc aatacattca aggaaatcgc gctctagatc tcattggtca ccttcactgc     11160
     gacgttttca atcaagataa atttttaatt aacggagtgg aagttagaat gagactcgta     11220
     cgttcgaaag attcattttg tcttatggag agtaaaacga tatcgaaaat acgcattctt     11280
     gacgctagtc tactcgtaag aagagcaaaa ataagcccgg gtgtgctact cgcacacgct     11340
     agaatgctga gtaaaactac cgccaagtat ccccttacga gagtcgaagt taaaacattc     11400
     acgatacatg caggcgtcgt gggggaatcg atagacaatg caatactcgg acagctgccg     11460
     aaacgaataa tagtcggttt tgtcgataac aaggcgttta acggcgatag aaaattgaac     11520
     ccgtttaatt tcaaaaatta cggtataaat ttcttttcgc tgtacgccga tggcatgcaa     11580
     attcccagta gaccgataca accaaatttt tcgaaagacg agccgctcta cgttgaagct     11640
     tatcacacat tattctcggg aaccggcatt cactttctga acgagggtaa ttctataagt     11700
     agagacgatt acgccaatgg ctacactctt ttcgctttcg atcttactcc agatctatcc     11760
     gctaattgcg caggacattg gaatctcgta aaacacggaa gcttacgatt agaagtgaga     11820
     ttcgaaaaag ctctttccgt gactattaat tgtatcgtct atgccgaatt tgataacgtt     11880
     ttagaaatcg actcctcgcg tcaagtcatt gtcgactttt ccggttagcc ctatggcttc     11940
     cgcgagaaaa ttattttccc cccccactac acattttttt ctcatctaat tggacacgcg     12000
     agatgacgaa aaaagcttca gtcttgtttg cgacaccgac gccagcgttt cgtgacgtaa     12060
     aaaaagtagc aaaattcgaa tatcataatg gatatagtca tcgacataca aggttttcgc     12120
     gatgtcgaag aaaactttat tccgaaagaa gtcgcggttc tagcgattaa tgcgacgatc     12180
     accggacact ggattatgac gtcaccctgc ccatttgacg atttacccga gagagtaaga     12240
     cgagaaaaca actggcttac acgaaattat cacggaatcg aatggttcga tggagacgtc     12300
     aatccaaaaa aactttacga tacatctgcg tgacattaca cgacacgcac gctacatcta     12360
     tatcagagga cgagagaaga cacgctatct gagtaatcta ctctctagaa acgtatataa     12420
     tctggaggga atttctccgg ctttcaaaaa tctaccagat ttcgaaggtc gtggacaacg     12480
     ctgcacgcat cacggatttc gaaccagcgt cgaatcacat tgcgccttac gcaacgctta     12540
     caaattgaaa cgctggctaa ctatacgaaa tagcagcaat tcaagttacg atagccttcc     12600
     ctcagaaaat tggagcgaga gcgacgtcga gagcgaaaag acagacagtg ggaatttttc     12660
     aattcaattt aaaaatcaga aacacgatat cattcgcaac attgaagcgt ggaggaaaaa     12720
     tatctcgaca gaaaagacga accagagtga ggacaaacaa gcgacagacg aggagaaaaa     12780
     agatcttcca aaattcgact ggtagagata aagctaacac tagcgtctca caatcatcga     12840
     gcatttttga gagctccaca tcgcacacgc cggcaaaaga ggtacatttt gaatttacgc     12900
     aaacatttcc tctctcacgc tctccgacga cgagaaatga attcgctgga agttttaaac     12960
     gcattacatc atctcagtgt ccgacatgcg ggggtctatc ctgccgatcg actgccgagg     13020
     gtgtggacga ggtcgactgc cattgtcgct aacacggacg atcacaatcg acctggcgaa     13080
     cactggatcg ccttctacat cgatgaacat ggaacaggga cgtatttcga tagctatggc     13140
     ttgccgccct tagatccaag attcctctta cgacttcgac gaaactccac cacgtatcgc     13200
     tggaatacga caacgctaca aggaatactt tctcaaactt gcggacaata ctgctgtgta     13260
     tttctacatt ttatgtgtaa tggctataat cttagccagt ttcttaatct gtttacctct     13320
     gattgtaagc gaaatgaccg attaatcgta cagttatttc ataaaatttt tcttcattgt     13380
     aaacataaat tcgtaaattc tcgtgttgta tgccgtcatg ttcaaacgtg tactctttca     13440
     aaaaaataaa ataactactt catgtaatat cccttttaaa taaacgtttt gaacttgtaa     13500
     atatcgtctg tttcttactc ctaccctccc caccctcatt tacaatagat acattttctc     13560
     ccgtattaca gacttagata atgtacatta aatacataaa atatagaaag aattttttta     13620
     aagtaatgct cgaagacgtc gcgccagttg aacatgttcg ttcctgtttt acctctcccc     13680
     attcttccta gcaaaagcaa gactctctct agactcccta attttcgtat aagatctcat     13740
     ctctcataaa taaaaacatt cacaaacgcc aacacgtcgg agacattgtg ccgcgccaac     13800
     aaaaaaatga ccgtcataaa accgcccgct attcatgccc agtgttcgta ctctgtcctc     13860
     acgacaaaaa atgctacaga ctcactcact cattttttcg gactttaccc tccattttgt     13920
     caaaggtcct ctagcacctc ccttctccaa tcacctcgcg ggtaggtaca gtgcgagcca     13980
     atcagatctt tgggcaagta tagggcgaac caatcagaac acaccattta attaccctat     14040
     tacccccacc cttcactcct cgaccaatca gagcacgccc ttttcctgac tgacccgtct     14100
     aggccacgcc catggcgccg gagggagacg tggagggggt ttgttttgac gctgcccaca     14160
     tactact                                                               14167
//
ID   Polinton-2_CoFl repbase;    DNA;    INV; 19335 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 24.11, Created)
DT   25-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-19335
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2107-2107 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 573/572-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1221..628
FT                 /product="Polinton-2_CoFl_1p"
FT                 /translation="MDFIISIHGFYNADRHFIPKEFSVVSLQGNVVGHWII
FT                 KPPCNFNDLPSDIKKHNNHQTVEVHGIEWFEGDVTLNDLKYHLITIAKNLK
FT                 RIYTYGSDEAKFISSILTREVHDXSQMHRTFKDFEDKVSSPVCLTHGQNHF
FT                 EKKKLFCALHKAHLLKQWFLTSISIKSSKQDSDLYYAAYQRLKRQKQQPTW
FT                 MTGYDVVG"
FT   CDS           15592..16278
FT                 /product="Polinton-2_CoFl_9p"
FT                 /translation="MEETLTLSLSGTSSVLEAQYFPPIELSPKHSYVLGLV
FT                 ELLSFNSIPNIDENCNKFYVDNQVIVLPTGSYEIEDIKSFLIEVLQPRNIT
FT                 LDITPNNNTLRSVIKCSHTIDFRPKDSIGRLLGFTQRVLNNNTTHISDLPV
FT                 AILKINALRVECNITRGAYINSNKVHTIHEFFPAVPPGYKIIEVPSQIIYL
FT                 PIIGRIIDHIQVRIVDQDGNLVNFRGEVITIRLHIKPSS"
FT   CDS           14304..15185
FT                 /product="Polinton-2_CoFl_8p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MIMHRKRGRGLVNKIINSLPVELHLPGYQYCGPGTKL
FT                 AKRLARGDPGVNPLDAACKEHDIAYSKNRQDLKARREADKILADKAWQRVK
FT                 ASDSSIGEKAAATFVTGAMKLKSKFGMGLKKEKKKKKHCINKRKRKKSSLK
FT                 KQGSALSAIIKAASQDMNTNSKKARDVISSALKGARTAVKKSGGKKHVKIP
FT                 RILRLPTQIGGALPLIPLFAGLSATGAIANGIAGIIKSINATKSAKKKLAE
FT                 SQRHNQTMEAIALGKGLYLRPHKTGLGVYLKPYVGKGLKKKKKKKKIKKSS
FT                 KQ"
FT   CDS           14129..13428
FT                 /product="Polinton-2_CoFl_7p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MEFKEQSIKLQVPNFDAIVKQEKRSNRHGELLPDSIR
FT                 AVFCGPSNCGKTNSLLALIVHPNGVKFENVYVYSKSLHQPKYKFLKDLLEP
FT                 IEGVKYLPFSEHETVVSPDDALPNSIMIFDDIACEKQDNVKAFFCMGRHKN
FT                 VDCFYLCQSYAQVPKHLVRDNVNFLVLFRQDEVNLKHVYNDHVNSDMPYIQ
FT                 FKNLCSNCWNDDKHGFVVINKDKQMNNGRYRKGFDNFAVHLGHT"
FT   CDS           8266..8907
FT                 /product="Polinton-2_CoFl_3p"
FT                 /note="DNA polymerase B (N-terminal half), maybe
FT                 frameshifted."
FT                 /translation="MIPIIFHNLSGYDSHLFIKELAINFPGRVQLLPQTKE
FT                 KYISFTKYVEGTDINLRFIDTFKFMPSSLDKLSSYLDEMKIIESTFSNDNY
FT                 DMNQINLLKRKGIFPYDYISSFEKLEEKKIPTKQDFYSSLYEAHITDEEYE
FT                 HAKSIWNTFNIQTLGQYSDLYLKTDVLLLAEVFENFRNNCLEAYELDPAHY
FT                 YTTPGLTWDAYVEVYKGLKIFFKL"
FT   CDS           12075..11455
FT                 /product="Polinton-2_CoFl_5p"
FT                 /note="integrase."
FT                 /translation="MEQIVEELHKAARRNYPRRKFNIRGLDETWQADLVEM
FT                 QPYASENKGYRYMLTVIDIFSKYAWAVPIKKKTGEEVTAAMHSILKKGRVP
FT                 VNMQTDRGKEFYNANFQNLMQKYKINLYSTYSNLKASICERFNRTLKDLMW
FT                 KKFSLQGNYKWLNLIQTLVKLYNNRKHRTIGLKPKDVTAENEVQVLKKFLK
FT                 NVKIAVSQNLKLAIKYA"
FT   CDS           16530..17783
FT                 /product="Polinton-2_CoFl_10p"
FT                 /translation="MDEILSIQSPVAFDESIAHYEIHAHQPYASSTYGNSD
FT                 EIRISIQHQDLCLLPSRSSLHVYGRLVKADGNTAVTNTALINNAICHLFEE
FT                 IRYEINAIEVDKCKNVGLTTLMKNWLSLRPDQKFMINAGWLGVGEEADDLT
FT                 NDNGYFDIMLPLNMILGFAEDYRKIVVNVKHELILTRARNDINAVLQTPVN
FT                 ANAADPAAVATWEDFKIVILKLEWLMPYVVMSDSHKIRLLNYLQKDKFIPM
FT                 SFRTWELYEYPLLPSTSKHIWTVKTSNQLEKPRYVILAFQTNRKNQKNVSA
FT                 SMFDHCNIRNVKLYLNSQYYPYGDLNLDITRNQYALLYHMYANFQNSYYGK
FT                 DCTPSLGKQHFLNRIPLIVLDCSKQNESLKNAPVDVRLEFESHTNFPANTS
FT                 AYCLILHDRIVQYSPMSGDVKKLV"
FT   CDS           12805..12404
FT                 /product="Polinton-2_CoFl_6p"
FT                 /translation="MTPGIMELLIKKHPNESLLTQEDFEKYYILLQTSNVH
FT                 RKGFKKNGAIRTHNSNKFNKIIAPMFDITVRKKGGSLLPHYKTARITQQVD
FT                 YIHWDDPNELVDRLRLLTAEKSAGNTSLDNEILSIIEELREGGYIY"
FT   CDS           8951..10690
FT                 /product="Polinton-2_CoFl_4p"
FT                 /note="DNA polymerase B (C-terminal half)."
FT                 /translation="FKVKLELLTDVDMLMFIERGIRGGISQCCNRYAKANN
FT                 AYMEEGKRDDMDEKYLMYYDVNNLYGWAMTQPLPYAGFKWIENINPTGILN
FT                 VEDDAEIGYILEVDLAYPETLHNAHKDLPFCAEHMTPPGSKQKKLLTTLYD
FT                 KKRYVIHYRALKQAVSHGLRITKIYRAIQFHQSSWLKTYIDLNSQKRQNAK
FT                 NDFEKMLYKLFNNAVYGKTMENERKRIDVKLINKWAGRFGAEAYISRPNFH
FT                 SCDIFDEQLVAIQLMRTDIFIKKPIYIGLSVLDLSKTLVYQFHYDFMRNKI
FT                 GDQCKLLYTDTDSLIYKITNKNIYNMMRENIREFDTWDYPINNDFNMPREN
FT                 KKIVGLMKDECNGNIMLEFVGLRSKMYSVKIQNQKLLKKAKGVKSSIVGAT
FT                 ITFEDYIKCLTESSSITREQKIIRSRHHQLFTEKETKIALSAHDDKRFLQP
FT                 GCTDTLPWGHYSIVGDESSNKREGSIEGVANQVGEAARTVPVLDPSKIDRT
FT                 LADEPTVGGSVPYKESSRPGKLILHSSRGPSKVELNQQKLTSPLSEPPRKK
FT                 PKYSQGNIFFFFFFFFFFLIVNICAYSHSICNV"
FT   CDS           6200..8266
FT                 /product="Polinton-2_CoFl_2p"
FT                 /note="Histone acetyltransferase (MYST family)."
FT                 /translation="MATVQHFKDVAHQLWKTYQQTINRYDAAHIQIQLDSS
FT                 LTVLKDSDFFFSKKKNDLSTSELQKFQSAIALLKTLIQLLYDRLEIVEAAK
FT                 IFINESEVFVSDSDREVEAAVTAFENEPEVFEPENNIEIASTSKFENNFTK
FT                 YVQGEGIAAGASTSAVIPSTTTLPVAENNKTVSLEDVNSAFEKRIMTALIV
FT                 NLKHLDLRNFFKDAKKQFFNRIQQSLSKHEALKVNTVLSSEYVTVKDNIES
FT                 ADIKFFNTKSQSIYQTTDLDDWFDKNVQQPIEQSMDDFEDAGSGWFLHSIL
FT                 NLVININKLNPMRGSSFIDLPDYIKKNACVNIVNTDNQCFKWAILSALHPV
FT                 NKNANRVSNYRRYENELNFNDIEFPVTPKKISKFEKQNNVSVNLYFLKKKG
FT                 NTYNVCPSHLSGNKKENHVNLLLVESFYIDDEEDDNTINIENDLNTEYKYH
FT                 YVWIKNLSRLIRKQLSEHQHAANICDRCLHYFWSKDKLKAHEEDCKNMNSC
FT                 KIILPKKEKNEHILEFKNFTYKNRVPFVVYADFECLLESVENKRAYQHHVA
FT                 YSIGCYIKCSYDDSQSEYKSYRQNDVNNDETPAKWFVNILYLLALKLEELY
FT                 KNPIKMIDLTTAEKVMYDQACLCHICNHPFSLVDKKVRDHCHLTGKYAYFF
FT                 FYFTVTIIIISYTKQKNIFSIAGFEVLRIASVILIIMIHE"
XX
SQ   Sequence 19335 BP; 6536 A; 3328 C; 3402 G; 6066 T; 3 other;
     agtagataag ctatggcgat tccagcccag gtgggctcga gtcgccaggc gatttcggcc        60
     cactccctct ccgcggcgag cggcccctct ttttgggtgg agtggtccct gctgcagcca       120
     atgggcgagc aggagctgtg gcttcctcgc attccttgtg cgtgcgctgc ttaaggttgc       180
     gtgcgccagc tgcagtgctg cttgagtttg cgcgcgctgt ttgagtttat gcgcaatgtg       240
     cattagcgcc tgtagcgccc gtgcgccagc tggtgacgtg caacgcagtt tgagtttgcg       300
     cgcgatgcaa tgtgcgtaag tcatctgcag cgctgatttg cgcgcgctgt ttgaatgtgc       360
     gaaaccgtgt gcagcttgtg cacgtggtag ttatatgcat acaaaacttt ttttgtgtta       420
     gcgagcgcgt tgcatgataa tgtaggatgt ggagtggtag ggaaataatt gttaaacatt       480
     ttttgtttta tttttaaaat cagtttatat taaatgaaaa atgtacatga tttacaaaac       540
     gattttgtta aacatgttgt tcttaaaata cataaaaatt tggcggaaaa aatttatcag       600
     tattatttat attatgtgct tcgcttaacc aaccacgtcg tagccggtca tccatgtagg       660
     ctgttgcttt tgtcgtttaa ggcgttgata tgctgcataa tataaatcgc tgtcttgctt       720
     tgatgactta attgatatgc tagtcagaaa ccattgtttt aataaatgtg ctttatgtag       780
     ggcacaaaat agttttttct tttcaaaatg gttttgtccg tgtgtaaggc atactggaga       840
     agagactttg tcttcaaagt ctttgaaagt acgatgcatt tgggamaaat cgtgaacttc       900
     acgtgtcagg attgaactta tgaacttagc ttcatcactt ccgtaagtat aaattctttt       960
     caggttcttg gcaatagtta ttagatgata ctttaagtca tttaaagtaa catcaccctc      1020
     aaaccattcg attccgtgga cttctaccgt ctggtgatta ttatgctttt ttatatcaga      1080
     cggtaaatca ttaaaattgc aaggtggctt gattatccaa tggccaacaa cgtttccttg      1140
     caaggaaacc actgaaaatt ctttcggtat gaagtgtctg tcagcattat aaaagccgtg      1200
     gatactaatg atgaaatcca tgatgtgttt atgagtattt tgaaattgtg aatatttaag      1260
     ttaaaaatga ttttttctaa tatatttttt atttgacaag gctctcgttt tcaccgttgc      1320
     tgttactact tgtgtcacat gggtaaaact gagtgaataa taatatacaa cctgtattta      1380
     taacttttct ttatcagagc tagtgacatc tgcccaccca acagcgctgc gtaaaattgc      1440
     gcaatctttc tccatgagca agtatgagat gtagctttcc ttctctccga gtgcctgagc      1500
     cgctcttgtg attacaatcg gtcagttaaa tagcttagaa gcacaacttt acttttaaaa      1560
     attattttta catcttattc tgaattataa ttacatattc taacagttct ttattattgg      1620
     caaaaaaaat ttttaatgag gaaaaactac tttatacatc gaactaagca catttttttg      1680
     atttaattta aaatatatcc aatcccttat tgcagaaaca tttctgatag cacataaagt      1740
     taatgttaaa ggcatggtat ttgcatggca aataggcttc gttaagtttt gcaagcgctg      1800
     ggcatccata ctcctcaata ttaacgactc taaaagtgta gaaaacatga atgacttgca      1860
     cctttattat attctatcat gtgtgcatat atacatactt gcatgttagt atttcttcca      1920
     ggtatttttt tttttttcaa gacccttgac gaaaaccgtt tccgcgtcaa caagttcagt      1980
     tttaaatata ttaagcgctc tttcatagga aatgtttccg acatttcagc ttataccatg      2040
     gaaattggtt atcaaccaac gattttgttt cttgtccgca tggataaatt tttccacgcg      2100
     aaaggcggct taagcactat tacaactgcc atggaatccc tatttttccc aagttcgaca      2160
     atgaaatttc tttaaaaaga aatttattat ttgtagtctt aaaaccctgg atatctacaa      2220
     tatactccat cactaaaaga gaaatatacc ttcttcggtc gagggtatac aaacaaatga      2280
     atatagcgtt aaagtacatt acactaaata cccaataaag tatcccgatc cttttatgtg      2340
     aattgagcat aactctttac ctcaatacgt ctaaaataga ttttcactgt atacatttta      2400
     ttgacgtgcg tgttatactt tgaaaaccta tggctatgtg cacttggtca taaaatgcag      2460
     gtagcaagtt tgtcggacct tgggatatag gtataataaa ttttaagact ctgtaatctt      2520
     taaaatgcag ttatatttat aatatttctt tatttaaata cgatatattt tacaatttat      2580
     ttacaatata ttttacaatt tatttacaat attaaaattt taacttgcga catactcttt      2640
     ttttttcatt tcattttcaa cttcttcctc aacccttttt ctttttaata aattcttaac      2700
     ttcaactatt tctggagatg attcgatttt cggctgcgga gaaatggata tgaccgcaac      2760
     ttctggcgaa gaggtcaaat cgataatttg tgaccctgtg ctgactggag tgatgtgctt      2820
     aagtctagag gtactctttg cggtgaaata ctcccaattt ctgtttcgag agagtaaaaa      2880
     ctctcagtgt acgaaagagt tggagagccc ggtgattcat cgcctgagga acatgaatcc      2940
     tcataatctg ttgaacaaaa taaaaaaaat tatgttaaaa agaaagaaaa gaaaaaataa      3000
     gaagaagaaa cgtttaagaa gactagagaa aaaaattaaa agtaattaaa ctcactttct      3060
     gtcggctgta aaactaccga cagatcaagt ggagctgttt gctccgtaat atgttctgct      3120
     gctgttgctg ctcgaagagc atcaaaagtc tccgtgtacg aaggagttgg ggagatcggt      3180
     gattctcgaa ctacatcggt ttcaccgcct gaggaacatg aatcctcata atctgttaaa      3240
     caaaataaaa gaataatgtt aaaaaagaac aaaaagaaaa aatagaagaa gaaacgttta      3300
     gaaaactaga gaaaataatt aaaagtaatt aaactcacct tcaaatttaa cattttctac      3360
     attggcaatg gtagtttcgg tttctgccgg ctgtaaaact accgacagat caagtggagc      3420
     tgtttgctcc gtaatatatt ctgctgctgt gctgctcgaa gagcatcaaa agtctcagtg      3480
     tacgaaagag ttggtgagga gatcggtgac tctcgaacta catcgatgtc accgactgaa      3540
     gaacacggtc tcgaaatatg attttcaaaa taatctacat agtgtcaaac aaaaaaaaaa      3600
     ttttttaaat aatgttaaaa ataatgttaa aaagaaaaaa taagaagaag aaacatttga      3660
     agaagaatgg agaaagtaat taaaagtaat taaactcacc ttcaaatata aaattttcaa      3720
     cgttgtcaat attggttgta gtttctgccg actgtaatac aaccgacaga tctaaaggag      3780
     ctatttgccc cgcaacgcat tctgctcgaa gagcgtcaaa attctccgtg aatggagaga      3840
     tcggtgattc ccgaactcaa tgaaaataaa aaaaaaaaaa aaaaaaaaaa aaaaacttac      3900
     cgataactgc agagttttca tcataagttg atgaaagtat tgagtccacc caaaaatcgt      3960
     cgtctatcag ttgttcagga aatatttcat ctaagatatt aataacacta ggcggcatct      4020
     cgtttaaaaa atttcggaac tccaaatcct cttcgagttc aatctcactt gtctgataaa      4080
     ctggtcgcgt tctagccatt gcaataataa tatccaactg tatggttcaa agtactattt      4140
     ctgaatgatt gamatcaaag tgctactcng cttttcttaa ttttagagca actactccga      4200
     tccaataaga aaacagctgc gttagaaaag gatgcaagtg caataccaaa acagcagtta      4260
     gaaaaagata caagtgcaac acccgcctcc gcagtcccct cccttcaaaa atgtgcaaag      4320
     catgcgaaac tatgttttgt acctatggta tgcgcaaaaa ccctctccct tggtctcatg      4380
     catacaggta atttttcgca tgtatgaatt tttccttcta cgataggttt ttcaaatttt      4440
     caaatagcca atcagaaata acttacgccc tccttcaccc ttctacacac attttcatgc      4500
     actttccgga ggatttaaga gctgctcttg accttaattt caaatcatag ctagtgaatc      4560
     acgcaaggag ccagcaactt ggggagtatt cacacgacta ggaatcatcc ttcaacaaaa      4620
     taaggtactt ttattttata atttattagc tttgctcttt ctcaccctca tcagtttttt      4680
     tatttttttt ttacatctta tcaatcgctt tagccgcaga aatgattggc aaaagttcta      4740
     ttttaactct ctccacagca atgatgttga gagttcttta attttttaaa atctttttca      4800
     ttaaaataac acttttaccg cagaaatgat ggtaaagatc tgttctaact ctctccgcag      4860
     aaataatgtt gagagttttt aatttccttc ctccctttga tttaaattga aaaatttttt      4920
     taaaataatg taggttttta tgaacgtaat atttttttac agcacaaaaa atggttaaaa      4980
     aaacatcaac tggtgacatc cgaaggtaca acgaacgact ttttcgtcgt gcgatagata      5040
     ctttcgcaag ggagtataga agaagaagaa gagcaggcga ttgtagaccg tgtagaccct      5100
     gcgagtcatg agatacccac ggaggaggat cccttagcag atgctgtgga agctgtttat      5160
     catgatcaag atgctgctgc tgctatgaat cctcttggag acgttgccca agaagcagtc      5220
     ccacatagat tttttttttg aagaagaaaa acgtaagaaa aaaattatta ttttatattg      5280
     aatctttata ttttgtaata ttttcttgat aaatattttg tttctttttt cttagaagaa      5340
     aacaccctta cagcatctga agctgcatgg gtagaggaag tattagctgt taaacgcccg      5400
     ccgcggggcg ggcgccggca gcaaacccaa cacatatacc aagtatgaat gaatatggta      5460
     aagaaggaaa aaaaaaaaaa aaaaattcat tctatttttc agtgaacaac caccgcttac      5520
     accacagcat gaagcttctt tgcttgttgc agcacgggta gtaccgttag acaacgagct      5580
     tctgacaaac aatctacaag aatggaccga cgaagatcgg aatattttaa ccttgagggt      5640
     ggagacagct cttcaaaatc aaaggccgag ggtaatccaa cgagaaatga agaagatgat      5700
     aagcgaacgg atgaaagaac gtgaaagaat tttaaaacag gaaacctggc ttaaaaaaag      5760
     aattgaaaaa gctgaagaaa aaaaaagaga ggctatagaa aagctcaagc aacggagttt      5820
     agctttagcc gcaaaaaaat agagcaagtc gaaagcgacc tattaaagaa aattatgtgg      5880
     atgatttttg tgagaaaaaa aaaaaaaaat cgtggagaaa aaaaagtagt agtagtagta      5940
     gtagtagtag tagtagtagc agtagtagta gtagctaaaa attaagtaaa tttaaatgta      6000
     aaaaaaaata aaaaaaaata aaataaaatg aatttactct agttgtgatg agttttgtat      6060
     aaacaactgt gtaccccccc cctccccctc catatgccta ctattttcta aaatttgttt      6120
     tataataaga ttggagctgc ttaaacagct cattttcatg taatctgtga gcaagtaaac      6180
     ttgcagtttc aagttagcta tggcaacagt acaacatttt aaagatgtgg ctcaccagct      6240
     atggaaaaca tatcagcaaa ctataaatag atatgatgct gctcatatcc aaattcagtt      6300
     agatagcagt cttacagttc taaaggatag tgattttttt tttagtaaaa aaaaaaatga      6360
     cttatcaact tccgaattgc aaaaatttca atcagcgata gctttactaa aaactttaat      6420
     acaactactt tatgatcgct tagaaatagt ggaagcagca aaaatattta ttaatgagtc      6480
     tgaagttttt gtatcagaca gtgatcgtga agttgaggca gcagttacag catttgaaaa      6540
     tgaacccgaa gtgtttgaac cagaaaataa tatagaaatc gcgtcaacta gcaagtttga      6600
     aaataacttc acaaaatacg ttcaaggtga aggtatagct gcaggggcat ctacatcagc      6660
     agtaataccg tcaacaacaa cacttccagt tgctgagaac aataaaacag taagtctcga      6720
     agatgttaat agtgctttcg aaaaacgaat catgacagca ttgattgtta atttaaaaca      6780
     tttagatttg agaaattttt ttaaagatgc aaagaagcag ttttttaacc gaatacaaca      6840
     gtctcttagc aaacatgaag cactaaaagt taacacagtg ttgtcatctg aatatgttac      6900
     agtaaaagat aacattgaaa gtgccgatat aaaattcttt aacacaaagt cacaatccat      6960
     ttatcaaaca actgatttag acgattggtt tgataagaat gtgcaacaac caattgagca      7020
     aagtatggat gactttgaag atgctggttc tggctggttt ttacattcaa tattaaattt      7080
     agtcatcaac atcaataaat tgaatcctat gcgaggtagt tcatttatag atttaccaga      7140
     ctacattaaa aaaaatgctt gtgtaaatat tgttaacacg gacaatcaat gctttaaatg      7200
     ggctatttta tcagcattgc atccagtaaa taaaaatgca aatcgtgtct caaattatag      7260
     aagatacgaa aacgagttga attttaatga tattgagttc ccggttaccc ctaaaaaaat      7320
     ttctaaattt gaaaaacaaa ataatgtttc ggttaattta tattttttaa aaaagaaagg      7380
     taatacttat aatgtttgtc ctagtcattt atcaggaaac aaaaaagaaa atcatgttaa      7440
     ccttttactt gttgaaagtt tttatattga tgatgaggag gatgataata caatcaatat      7500
     tgagaacgat ttaaataccg agtataaata tcattatgtt tggattaaaa atttgtcacg      7560
     tttaatacgc aaacagttgt ctgaacatca acatgccgca aacatatgtg accgatgcct      7620
     tcattacttt tggtctaaag ataaattgaa agcccatgaa gaagattgca aaaatatgaa      7680
     tagttgcaaa attattctac ctaaaaaaga gaagaatgag cacatacttg aatttaaaaa      7740
     ttttacatac aagaaccgag taccttttgt tgtttatgcg gactttgaat gtttattgga      7800
     atctgttgaa aataaacgtg cgtatcaaca tcatgtagca tatagtattg gatgttatat      7860
     caaatgcagt tatgatgata gtcaatcaga gtataaaagt tatagacaaa atgatgtaaa      7920
     taatgatgag acacctgcta aatggtttgt caatattctt taccttcttg ctttaaaact      7980
     ggaagaattg tataaaaatc ctatcaagat gattgatttg acaacagcag aaaaggtcat      8040
     gtatgatcaa gcttgtttat gtcatatatg taaccatccc tttagtttag ttgataaaaa      8100
     agtacgagat cattgtcatc tgactggaaa gtacgcatat tttttttttt attttactgt      8160
     aacaattatt attatttcat acaccaaaca aaaaaatatt ttttctattg caggtttcga      8220
     ggtcctgcgc atagcaagtg taatattaat tatcatgatt cacgaatgat accgataatt      8280
     tttcataact taagcggtta tgattctcat ttgtttataa aagaactcgc gattaacttc      8340
     ccaggaagag ttcaactttt acctcagaca aaagaaaagt atatttcctt tacaaaatat      8400
     gttgaaggaa ctgatattaa tctacgattc atagatacct tcaaatttat gccttcatct      8460
     ctcgacaaac tgtcatcata tttagatgaa atgaaaatta tcgaaagtac attctcaaat      8520
     gataactacg atatgaatca aataaattta ttaaaaagga aaggcatatt tccgtatgat      8580
     tatatatcct cgtttgaaaa actagaggaa aaaaagatac caacaaaaca agatttttat      8640
     agtagcttat acgaagctca tattactgat gaagagtatg agcatgctaa aagtatctgg      8700
     aatactttta acattcaaac acttgggcag tattcagatt tatacttgaa gactgatgtg      8760
     ctactacttg ccgaagtttt cgaaaatttt cgaaacaatt gtctcgaagc atatgagtta      8820
     gacccggctc attattatac aacacctggt ttaacttggg atgcctatgt tgaagtatac      8880
     aaaggtttga aaatattttt taaattataa ttcattatga aataataata atattaatga      8940
     tgttaattga tttaaggtga aacttgaatt attaactgat gttgacatgc ttatgtttat      9000
     tgagcgcggc atacgaggtg gcatcagtca atgttgtaat cgctatgcta aagcaaataa      9060
     tgcatacatg gaagaaggca aacgcgatga tatggatgaa aaatatctaa tgtattatga      9120
     tgtcaataat ttgtatggtt gggccatgac gcaaccattg ccttacgctg gtttcaaatg      9180
     gattgaaaat attaacccaa caggtatttt gaatgtagaa gatgatgctg aaatcgggta      9240
     tatactcgaa gtagatcttg cttaccccga aactctccat aacgcacaca aggatttgcc      9300
     attctgtgct gagcacatga cacctccagg atccaaacaa aaaaaattat tgactactct      9360
     gtacgacaaa aaacgatatg taatacacta tcgggcactc aagcaagctg tgagtcatgg      9420
     tctccgtata acaaaaatct atagagccat acagtttcat caaagttcct ggttaaaaac      9480
     atacattgac ttaaacagtc aaaaacgtca aaatgcaaaa aatgactttg agaagatgtt      9540
     gtacaaatta tttaataatg cagtatatgg aaaaacaatg gaaaatgagc gcaagcgaat      9600
     tgatgttaag cttatcaaca agtgggcagg aagatttggg gcagaagcat atatttcacg      9660
     tcccaatttt catagttgtg acatatttga cgagcagctt gttgctatac aattaatgcg      9720
     cactgatatt tttattaaaa aaccaatata cataggatta agtgtcttgg acctgtccaa      9780
     aacacttgtg tatcaatttc attatgattt tatgagaaat aaaattgggg atcagtgcaa      9840
     actgttgtat accgacactg atagtcttat atataaaata acgaataaaa atatctataa      9900
     tatgatgcgt gagaatatca gagaatttga cacgtgggac tatcctatca acaatgactt      9960
     taatatgcct cgtgaaaaca aaaaaattgt tggtcttatg aaagatgaat gcaatggtaa     10020
     tattatgttg gaatttgtag gattgcgaag taaaatgtat agcgtgaaaa ttcaaaatca     10080
     aaaactatta aaaaaagcta aaggtgtaaa aagctccatt gtaggagcta cgataacctt     10140
     tgaagattac atcaagtgtc tgactgaaag ttctagcatc actcgagagc agaaaattat     10200
     tagatcgcgt catcatcaac tattcactga aaaagaaacg aaaattgctt taagtgcaca     10260
     cgacgacaaa cgatttttgc aacctggttg taccgatact ctaccatggg gtcattatag     10320
     catagtggga gatgaatcat ccaataagag ggaaggatcg atagaagggg tagccaatca     10380
     ggtaggagaa gctgcaagga ctgttcctgt attggatccc tcaaaaatag acagaacact     10440
     agcagatgag cctacagtgg gggggtcggt accatataag gagtcgtctc gaccaggcaa     10500
     gctcattcta cactccagca gaggtccaag taaggttgaa ctcaatcaac agaagctgac     10560
     atcaccttta agtgaaccac ctcgtaaaaa acctaaatac agtcaaggta acatattttt     10620
     tttttttttt tttttttttt tttttcttat agtaaatatt tgtgcatatt cacacagcat     10680
     atgtaatgta tgaataattt atgctaactt tcatgttttt ttgtttgtta aagatggatc     10740
     ttgcaacact caacaaaatc gctgacagtg attttctgcc aacgaaaaaa ctttccgaat     10800
     tgattcccga ccaaaactac atggtgtcaa aactaagaaa agtttatact aaattcggac     10860
     ccaagatagt tgcagaactt gacgatgact ttcaaatttt tctgcagact agaataagtg     10920
     cagctctgtt taaaaacgaa gaattctata atgaattatt ggatgctgta aataaattta     10980
     aattatttat gtatacaatg gaaaacacat tatattttct tatgtgtgat gtaaaaaaag     11040
     tgaaaaaaaa aattacaatt ttctctaaaa tttgagtatt tatttaaaac attctttcta     11100
     tgtaacattt tcattattac ttgatacata ttacaatctt atgatttttt aacttaaagt     11160
     aattcaaata tcttagttat ttattcgtcc aactattgtg agtactgtca aaacccaacc     11220
     atttaacaaa aactcgattg ccacgccttt gaaggatctt ctctatgagg tatacatcag     11280
     gatgttttgt tttctgcagt tcttgctcgt agaaacctcc agaaataggt tgatcttgat     11340
     aatctttcag atgatacgtc gttggatttg ttgctgctac tcgcgtgatt gtaaatattt     11400
     ctgtcgacca attcggtgta taaccttttt cgaatgcttg ttttgtcttg ctcacgcgta     11460
     ctttatcgcc aattttaaat tttggctcac tgctattttt acatttttta aaaatttttt     11520
     caagacttga acttcatttt cagcagtaac gtctttcggt ttcaaaccaa ttgttcgatg     11580
     cttcctattg ttatataatt taactaacgt ttgtatcaaa ttcaaccact tataattgcc     11640
     ttgcaaacta aattttttcc acatcaaatc ttttaaagta cgattgaatc gctcgcatat     11700
     tgaagcttta agattgctgt aagttgagta taaatttatt ttatattttt gcatgagatt     11760
     ttggaagttt gcattataga attctttgcc gcgatcagtt tgcatgttta ctggcacccg     11820
     tccttttttt aatatcgaat gcattgctgc agttacttct tcaccagttt ttttcttgat     11880
     gggtacagcc catgcgtact tggagaaaat atctattaca gtgagcatat accgatatcc     11940
     tttgttttcg gaagcgtaag gctgcatctc tacaaggtct gcttgccaag tctcatctaa     12000
     accacgtatg ttgaattttc ggcgaggata attacgcctt gctgccttat gcagttcctc     12060
     aacgatttgc tccatgtatt aattgtctag gtttaagttt tctgaatcag cttgaataaa     12120
     tgggaatttt ttttgtaagt tgaatataaa aattcgaaag ctatctattt ctttttcaag     12180
     ctttttaatt acttcaatca agtaagcata atttactgca tcttgaggct gtttcggtgt     12240
     tccaacattg cacagtcttt tgttatttaa gtcatactgc ccatctgttg taagtttata     12300
     tccaatacca ggaggacctc ggctaccgcc ttcggtttta cctagttttc gaccgaatac     12360
     atcgacactc attttgatac taaagcaaaa attgtgcaca tcaatatata tatcctcctt     12420
     cacgaagctc ttcgatgata gataaaattt cattgtcaag acttgtattt cctgctgact     12480
     tttcagctgt taataagcgt aagcgatcta ctaactcatt aggatcatcc caatgtatat     12540
     aatctacttg ttgcgttatt cgagcagttt tataatgagg tagcaacgag ccgccttttt     12600
     tgcggaccgt gatatcgaac attggagcga taattttatt gaacttatta ctattatggg     12660
     ttcgtatagc tccgtttttt ttaaaccctt tcctgtgaac atttgaagtt tgtaataata     12720
     tgtagtattt ttcaaaatcc tcctgtgtca acagagattc attaggatgc tttttgatga     12780
     gtagctccat tattccagga gtcattggaa actttaaatc atttattttg atacgattgt     12840
     tttcaaagtc tattcgcgaa tcgccaagct tgtacaactc attttctttc cgcactccat     12900
     actttaaatc taataaatct ttctgatttt catcaagtat ttgtaaataa aaattattta     12960
     atgaattctt actaatttgc actgaatcaa ctgattgatt ctgaatagta ttatttaaat     13020
     cagtatcatc atcactttca ctaatggcag actcgaatgc tatatcactt tcactaaact     13080
     tttctctgtc ttttgatgct tttctttatc aactttatta ttttcttcat cgtttttatt     13140
     ataaaaataa ttatgagtaa cagaattatt actattattt tttcgttttt ttgtttcggc     13200
     aacaatttcc attagagggt ctgtaattgg tttaaaagtt tcactaagca ctttttcagc     13260
     ctcatttttc ccaaacttca atagtctgta cttttttcta acagcctcac gtgccttcac     13320
     taactgatgt agaacgtctt tctcttgttc atacataatg ataatgatgc tgacgatgat     13380
     gatgatgatg cttcaatgtc ttgcgactga ctgtaatgat tgcactaggt atgtcctaaa     13440
     tgtacagcaa aattatcaaa accttttctg tagcgaccat tattcatttg tttatcttta     13500
     tttataacaa caaatccatg tttatcatca ttccagcaat tagagcataa atttttaaat     13560
     tgaatgtatg gcatgtcgga gtttacatga tcattataca catgcttcaa attaacttca     13620
     tcttgacgga ataaaactaa aaaattaacg ttatccctaa caagatgctt tggtacttga     13680
     gcatatgact gacaaagata gaagcagtca acatttttgt gtctacccat acagaaaaag     13740
     gcctttacat tgtcttgttt ttcacaagct atatcatcaa aaatcattat agaatttggt     13800
     aaagcatcat cgggtgaaac tacagtctca tgttcgctga aaggtaagta tttcacaccc     13860
     tctataggct ccaataaatc ttttaaaaac ttgtattttg gctgatgcag cgatttagaa     13920
     tacacataca cattctcaaa cttaacacca ttgggatgca cgattaaagc caataagcta     13980
     ttagttttac cacaattaga tggaccgcaa aatacagcgc gaatactatc ggggagtagt     14040
     tcaccatgtc gattcgaacg cttttcttgt tttacaatag cgtcaaaatt cggaacttgt     14100
     aattttatgg attgttcttt gaattccatg tctactcggt atgaaggatg agtgacaact     14160
     aatcttttaa ttgaatagta taacgctttt atattttgag ctctttattg taacgaattc     14220
     gtctactata aatacattat ttgttttctc gaacgcttag tcataatcca acctctgaag     14280
     actaatcatc atcatgcatc atcatgatca tgcatcgtaa gagaggacga ggtcttgtaa     14340
     ataaaatcat aaattcttta ccagtagagc ttcatttgcc tggatatcag tattgtgggc     14400
     ctggtactaa gcttgctaag cgtcttgcta gaggagatcc aggagttaat ccgctggacg     14460
     ccgcgtgtaa agagcatgat atagcatact caaaaaatcg acaagattta aaagccagac     14520
     gcgaagcaga taaaatttta gctgataagg cttggcaaag agttaaagct tcagattcaa     14580
     gtattggtga aaaagcagca gctacctttg tgactggcgc tatgaagctt aaaagtaaat     14640
     ttggtatggg gctaaagaag gagaagaaga agaagaaaca ttgtattaac aaaaggaaaa     14700
     gaaaaaagag tagcttaaaa aaacaaggta gtgctttaag tgcaattatt aaagctgctt     14760
     cacaagacat gaataccaat agcaaaaaag ctcgagatgt cattagtagt gctttgaaag     14820
     gtgctcgtac tgctgttaaa aaatctggtg gtaaaaagca tgttaaaatt ccccgcatct     14880
     tacgccttcc tactcaaatt ggtggagctc tacctctgat acccttgttt gctggtttga     14940
     gtgcaacagg tgctatagcc aatggaatag caggaattat taaaagcatc aatgctacta     15000
     agtcagccaa aaagaagcta gctgagagtc agagacataa tcaaaccatg gaagctattg     15060
     ccctcgggaa aggtctttat ctcagacctc ataaaactgg attaggagtc tatttaaagc     15120
     cttacgttgg aaaaggttta aagaaaaaaa aaaaaaaaaa aaaaatcaaa aaaagttcaa     15180
     agcagtaaaa ttacctgatc gagctctgac caacatagat ttgatgaaat attctaaaat     15240
     cttaaaaatc ccacgttttc gtggagtatt catgagaaac aacttacctg ctgatggccc     15300
     gcggttttct gaaacagcta tagtaaatct tgatgataag aatggacctg gaactcactg     15360
     ggtggcttat cgaaaacgtg gtaataatgt tgtatatttt gacagttttg gagatcttca     15420
     gccacctatc gacttaatgt tatatctaaa agttaataag gtgaaatata atcataagcg     15480
     ttatcaaaaa tttaactctt acaactgcgg tcatttgtgc ttaaagtttc tttcaaaaca     15540
     aatataactt tcttacatca agagaaacct cttagttata ctttgacaac gatggaagaa     15600
     acattaacac taagcctttc tggtacttct tctgttttag aagcacagta ttttccacct     15660
     attgaattat cgccaaaaca cagctacgtt cttggcttag tagaactttt gtcattcaac     15720
     tcaattccaa atattgatga aaattgtaat aaattttacg ttgacaatca agttattgta     15780
     ttaccaaccg gtagttatga gatcgaagat attaagtcat ttttaattga agtattacaa     15840
     cctcgcaaca taactcttga tattacgcca aacaataata cgcttcgaag tgttatcaag     15900
     tgcagccata ccattgactt tagacctaag gattctatag gtcgtctatt aggtttcact     15960
     cagcgagttc ttaacaataa caccactcat atttcagact tacctgtagc tattctaaag     16020
     ataaacgcat taagagttga atgtaacatt acgagaggag cttacataaa tagcaacaaa     16080
     gtgcacacga ttcatgaatt ttttccagct gtaccaccag gatataaaat tattgaagtt     16140
     ccttcacaaa taatttattt accgattatt ggacgtatta ttgatcatat tcaagtacgt     16200
     atagtagatc aggacggtaa tttagttaat tttcgtggtg aagtcataac tataagattg     16260
     catataaaac cctcttcata atgggtatca tttataatca aacaaatcat ataggtagct     16320
     caatatgcac tccagcactc agtcaacgac gagctctcaa accgttgaga cgtcagaaaa     16380
     aacagtccat aaaagcatcg agacatctaa gaagacagcc aacacgtcaa aaactaactc     16440
     atcaaaacat acagtttata aaaagtctcg gtttaaaaat aagaaaccct ggtggaaaat     16500
     aagttggata cttttttgtt gtataaaaaa tggacgagat tctaagtatt cagtctccag     16560
     tcgcatttga tgaatctatt gcgcactatg agattcatgc tcatcagccg tatgcatctt     16620
     caacatatgg taacagcgat gaaattcgaa tttcaattca acatcaagat ttgtgtcttt     16680
     taccatccag aagttcttta catgtttatg gaagattggt caaagcagat ggaaatacag     16740
     cagtaacaaa tactgctttg ataaacaacg caatctgcca cttatttgaa gaaataagat     16800
     atgagataaa tgccatagag gtcgacaagt gcaaaaatgt tggattaaca acccttatga     16860
     aaaattggtt atcacttcgt cctgatcaaa aatttatgat aaatgccggt tggcttggtg     16920
     ttggagaaga agctgatgat cttactaatg ataacggcta ctttgatatc atgcttccac     16980
     tgaatatgat tttgggtttt gctgaagact atcgtaagat agttgttaat gtaaaacatg     17040
     agcttatact tacaagagca agaaacgata taaatgccgt gttgcaaact ccagttaatg     17100
     ctaatgctgc tgatcccgcg gccgtagcaa cttgggaaga ctttaaaata gtaatattga     17160
     agctcgagtg gcttatgcca tatgtggtaa tgtcagattc tcataaaatt cgtttattaa     17220
     attatctgca aaaagacaag tttataccta tgagttttcg aacttgggaa ttatatgagt     17280
     atcccctgtt acctagcaca tccaaacata tatggacagt taaaacatca aatcagttgg     17340
     aaaagccacg ttacgttatt ttagcctttc aaactaaccg taaaaatcag aaaaatgtaa     17400
     gcgccagtat gtttgatcac tgcaacataa gaaatgtgaa actctactta aattcacaat     17460
     attatcctta tggtgatctg aatcttgata taacgcgtaa tcagtatgca ttgctatatc     17520
     atatgtatgc taattttcaa aattcatact atggcaaaga ttgtacacct tcactgggca     17580
     aacagcactt tctcaatcga atacctttaa tcgttctcga ttgttcgaaa caaaacgagt     17640
     cattgaaaaa tgctccagta gatgtgaggc tagaatttga gtcgcataca aattttcctg     17700
     ccaatacgtc agcttattgc ttaattttgc acgaccgtat agttcaatac agtccgatga     17760
     gtggggatgt caagaaactt gtgtaggata taaagttgat tcagggcttt gctagcatca     17820
     gtttattttc aaccacaatg gataaaggtc ggagcaacag ctggagtaaa gaagaagcag     17880
     aaaacaaacg acgacaagaa gagtgggaaa aatttatgag gagaaacgag aagaaagaca     17940
     taaaggttga taaaacaaaa tctgcggaaa aatcgaaaga taaagactgt aaaattgttt     18000
     gaaaattaat atgtttaata agctttactt taatcaatat gtcacataaa ccgtgtacga     18060
     gtaattttac aactaatgtt aagtatcaaa aaatctcaac taaggatgat gatgatagaa     18120
     ataagaaatc tgggctgaaa aacttcgtcg ataaatattc aaccaacaaa ggatcttgtc     18180
     ctaaaaatga aggttacgaa aaaataaaaa agcaataaaa ttaaatacta taattgcgaa     18240
     agatggagta ttttgtggac atgcaaggtt tcaagaaacc gggtaatgat tatgtgctca     18300
     aagaattggc tatcctcccg ctcaatacta acgatgcaga agcccaagta tttcttttta     18360
     aagcaccctt cagctggcga aaattaccca aaagtataaa catgaaaatt tataccttga     18420
     actttgctat catggactaa cctgggactc gggaaaaatt gagtatacag agataggaaa     18480
     tattttacgg gagaatcttg aaaatgctac aaagatacat gtcattggag atttaaaaaa     18540
     aaagtggctt gaaagatttg gctttaaggt cactgatatg acagactatc caccgttcga     18600
     actcccaaga ttggttacta cttgcgcaca tcacaacgga gcctacaaat ccatgtgtgc     18660
     tcttcataat gtgaagcgaa tgaaaaaatt ttactttaat atggaatggg ttgatgatga     18720
     tgatgacgat gatgataata atatagagct gtaagaatgc attgtatttt aagaacaaca     18780
     tgtttaacaa aatcgttttg taaatcatgt acatttttca tttaatataa actgatttta     18840
     aaaataaaac aaaaaatgtt taacaattat ttccctacca ctccacatcc tacattatca     18900
     tgcaacgcgc tcgctaacac aaaaaaagtt ttgtatgcat ataactacca cgtgcacaag     18960
     ctgcacacgg tttcgcacat tcaaacagcg cgcgcaaatc agcgctgcag acgacttacg     19020
     cacattgcat cgcgcgcaaa ctcaaactgc gttgcacgtc accagctggc gcacgcggcg     19080
     ctacaggcgc taatgcacat tgcgcataaa ctcaaacagc gcgcgcaaac tcaagcagca     19140
     ctgcagctgg cgcacgcaac ctcaagcagc gcacgcacaa ggaatgcgag gaagccacag     19200
     ctcctgctcg cccattggct gcagcaggga ccactccacc cgaaaagagg ggccgctcgc     19260
     cgcggagagg gagtgggccg aaatcgcctg gcgactcgag cccacctggg ccggaatcgc     19320
     catagcttat ctact                                                      19335
//
ID   Polinton-2_DBi repbase;    DNA;    INV; 8566 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Polinton DNA transposon from the Drosophila biarmipes genome.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-8566
RA   Kojima K.K. and Jurka J.;
RT   "Polinton DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 995-995 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 8566 BP; 2750 A; 1469 C; 1364 G; 2982 T; 1 other;
     aaataacaca ttgaaaagga actattttat aaatcaattg aattggagat gttttattat        60
     gatcgagact ttggaaaata taaataaaaa atattttgag tttgtaaaaa gtttatttat       120
     tattttaaaa tttatttaag taaagattgt acaaaaatat tattaaacta agtataagat       180
     aagctgaata tataaaatga aattaaataa atcacttgtt atactacaaa atgtctcctt       240
     atttatccag ctagtctttg aaaaccccag ccacttaact aaaactttat ttccttttcg       300
     ccttacaact ttttcaacta ggtatgtatg ggggaatcgt gtttttttga gttcttttta       360
     tagaatccgc cctgaatcgg actaccatct aaatcttcaa gtaagtatgt tttagggtag       420
     gtattsttca cctttctaat tttaaagatt tcagttgtat agtttggtgt ataccctttc       480
     tcaaaaacat atttaattgg aacaaatatt ttcaagtgat tataggacgt ttgtaatatt       540
     tgtttttcat tggaagaatt gacattactt ggactcattt taattgttct gtgcacccga       600
     ttattatatt tattaattaa ttgcttatac atatctatcc acttatattt tccattgaaa       660
     ctaaattctc gccacattag ttctttaaga gttctttaaa acgttcaact atagatgcct       720
     ttagagtact gaaggttgaa taatgattta tcctataact tttcaagaat tcagtaccat       780
     catcagtttg caggtttttt ggtgttccat gacccgattt aaatattctt tccatggctt       840
     gagaaacatc attagcactc tttgacttta atgcctcacc ccaaccaaat tttgaaaatg       900
     tgtctataac agtcaacaag tatctgtacc catcgtttga ttttgaaaag gctcccattt       960
     caaccaaatc tgcttgccac agatcattta taccccttgt aatcactcgc cttcgttgaa      1020
     agttttttcg agatggtcca tgcaactcat ttacaatttc tcgcttaatc atatttttct      1080
     aataggctga aaagcgacac cttctatctc aattgtggtt tttttcggca atgatattgg      1140
     gtttgttaca tatttaaaaa tgtaatcctc aatgctttta atcttttcta gaattttgtc      1200
     aaaaatttgg tcagcgctgt ctgccctctt attatacaat tcaattttat tttctaagct      1260
     tgaaattttc gtgagtcgac gattaatatt ttgagttata atttttctta aatcttctcc      1320
     caactttccg atgttctcat cagtatattg tttcgtggct agatcatcgt tatctaaagg      1380
     ttttgttcca ttcttgatac gtttattttg agcatttagg ttaccgtcct catcgatgaa      1440
     taatccttca gtagacttaa cacgtctttt caaattttct gatctttcct tatcaacaga      1500
     aaaatgtcca aacttgtcga cagacatgtt gtttataatt gtaaaacatt tgtgcacttg      1560
     ctatttatac ccattaaaat ataatccttt cctcacgcaa ctcctctagt atggaaaaaa      1620
     tttcattatt gtgactagtg ttacccgctg ctttcgatgc caccaaaatt tccaatcgtt      1680
     caactaactc attaacatca ttccagtata catagtttgg atttgacttc tgaagggtca      1740
     tgtaaccaaa acctgttttt gagcgaagtg gagtagacgt tgtaggattg aaagtattgt      1800
     ctatcaactt cttaataata tgggtatatt cggtatagga ttaaagccta ctctatgtat      1860
     attcgtttct aatataattt ttttatacat ctttaaatca tgatcatcat agttttcagg      1920
     tttactaaga aaaattagag agtacagacc aggagtcaga tcacaactca ttccactaga      1980
     aaatgttatt ttattatctt taatttttag ttctttattc cccaatgtta atgaattgtt      2040
     tgcagttttt ttaggtccat aacctttatc caacacattt cctctggtca aattactgat      2100
     attaaaatca taattataac tagtgttttt atcttctaga tctgcgtcca gacccatatc      2160
     gacctcttct gtatacattg gtgaaggtgt tgccccttct tcttcaatct tttccgtctc      2220
     ctttttctct ttttctacat cttcctctat attcgtctgt gaaaagaatt cgttatagga      2280
     attactttca tcggaagacc ttcgtgaaat tatatttcga ttagattgga ggtctttctc      2340
     attagttgta aagtataaat cgtccaactc tttctcatca tcatcgtatt ttgtatattt      2400
     attcaattca cgttttactt ttatactgtc ttttacatta gatgtctttt gttttttatt      2460
     ttccttaaca agttcatgta agggttcggt aatgggttta aaagtttcct ccaattgtaa      2520
     attcgtctga tttctgactt gtttgagatc atcgaatttt cgcttcaatg cgaacctagc      2580
     tttggttaac tgagacaaaa tattcatcgt agtatatttt acaaacttta tagggaaaga      2640
     atttaaattt tttcgaaatt catgtagtca ctcctcagtt actaaacaaa tactgtttag      2700
     gaaacgccat tatctgtaat atttatatac catttcccaa taaaaaagat tcgatatatt      2760
     tttttcatta tatttaaaaa aagtgcattt attgttttat tcttaaaatc tcacattttt      2820
     aatgattatt ggcttatttc taaatataaa ttgtcattac ttttatgaat attaaatttt      2880
     ccatcaacca tctgattgat gatattatcc tgaagagagg tgtacctttc cggcatgtag      2940
     aggatgtgtt cctccaactc gagagcaata gattctccaa cctttgttgt tttgcgctcc      3000
     gccttgagga tcgggaatct tacattttca ggcatccttg tcttcgatat cagcgtcttt      3060
     ttattaaatt tattgaactc tttgattaca atattcatct ggttttcatg gttcatgatg      3120
     gtgattgagc tttttggacg tgctacggtt gttacccgtt gttaccttga tggtttagac      3180
     ttggtcttgg atggtaatta cttgaacagg ggtgtactgt ttctgtactg tagctgtact      3240
     gtagctgtac tgtagctgta ctgtagctgt actgtagctg tactgtatct gtactgtatc      3300
     tatactgtac tgtctatttt gttaagaata atcaaagttc ttgttcacta gatgacgatc      3360
     gatgtgaagt aaagacttag actgtgaatt tcaacgcgtg cgggtccact ttttatacca      3420
     tacagagctc acacgtacac gtacccacac attgattttc aaccccccaa atgtaaatta      3480
     accaaccaaa tatacctgtt atgactccac atcttctacg aaagaaagta gaaaagcgag      3540
     gcacaggtgt ccacagttgc aaagtcttga actctatcgt aattgtattg tattctataa      3600
     cccaagtatt tcacaacttc tctaggtggc tgaagatttc caaagctatc gaaataatgt      3660
     atattatttt tatttttatt atatgcaacc caatgtgtac cacttgattg tgatttatct      3720
     aggtttacta taccacactc ccgaattctt ggtgtttctg ggagtagatc tctcataaat      3780
     acacctctaa aatgagggat atgtttctta gcaaaacatg taatgtcgat atttgatagt      3840
     ggtctattgg gtagcagaga aatagttttt tcgcttctta actcctttcc ccttactata      3900
     gggcttgaga aagaaaccat agccctttct atagggttta agatataatc cttctcctac      3960
     agcaacacct tcaattttcc tgttgtgacg tttcttctcc tccatatctt ctttagccat      4020
     tcttgcattg ttaattgtct ttgcaattgc ggcactaccg cttgctaagc taccaagagc      4080
     gctgagggcc gtcaagatgg gcacgattgg tagaaaacct ccaattttgg gtacattaat      4140
     tacacgaggt attttaacat ttttcttgga acccattgat tgatcaattg atttacgtgc      4200
     tactttaatt gcactcataa tgtctaatgg tttttgtttt ttaatgtctt agtagcagca      4260
     ttaataacag tcgaaaggtt tgttttcttc attgtattct tctttatcgt tttcctcccc      4320
     ttcttttccg tcttattcaa tcccatccca aattttttct tcgctttcat tatatttgta      4380
     acaaagtatg ctgctgcctt ttcaccaaga gtgctatctg atgccttgac acgcgaccag      4440
     gctttgtcaa tcaatatgga gtcggctcta tgtcgttcac tcaatgcctt gtttgtagaa      4500
     tatgcaatat cgtgctcttt gcaggcttca tccaatgggt ttattccttg atcaccgcgt      4560
     tccaaacgtt tctgtaactt tgtacccggt ccacaaaaat tatatcccgg aatatgggct      4620
     tcaaacggta atgtattgat tagcttatcg acaagaccac caccgtgttt acaattaaaa      4680
     atacgactga agcgattata aaaacgtttc cccattttat tgatgtttaa tcatcaaaga      4740
     tttctcattg aatgaagtac attagattga aagatgcgtt taataagcca aaaacaaaaa      4800
     attgtagtta gaaatattaa cgatgaaaac gagaaaaatc taccgccacg acatagtgtc      4860
     ctcttaccga atacaataag agctctaatt gtcgggcctt ccaattgtgg taaaactaat      4920
     attatgctaa gtttaataga aagtcccaat ggactaaaat tcgaaaatgt ttatatattt      4980
     tcaaaaagtt tatatcaacc taaatatgag tacttggaga aattaatcaa accgataaaa      5040
     ggaatgggat atcatacatt ctcccataat gacggtgtac tagaccccag tgaagccaaa      5100
     aataattcca ttatgatatt cgatgacgta gcttgtgaaa aacaagacaa cataagatca      5160
     tatttttgta tgggtcgaca taaaaatatc gactcttttt taaatagtca tataccgaaa      5220
     catttgattc gtgacaatgc caactttatt ataatgttta aacaagatga tttaaatatg      5280
     cggcatatat atcgggatca tattaacact gatatgaatt atgaaacatt tgtaaaaatt      5340
     tgtcaaaagt gttgggagga taagcacgga ttcctcttga ttagcaagga tgatgaaatg      5400
     gataatggaa ggtacagaaa aggatttgat caatttatta tgatttaagg agtgatatca      5460
     ataaaagctg ggttagatac caacaatccc acagtttatc aatagatttc aatatgtcta      5520
     gatcacttac attatctttg aatggaaata gttccattat aaatacaaac ttttttccac      5580
     ctatcgaatt gaatgggcaa tatgaatgcg ctcttattga ctttaatatg tataattcga      5640
     ttccaaatat tgacgaaaaa ataatttatt tcacatcggt gacaatgtta ttacgattcc      5700
     tactggatca tacgaattga atgacatcac cgatttcatt tacaataaac taaaagacta      5760
     taaccttgaa aaaacattta aaatccaaag taataataat acacttcaag ttgaaataac      5820
     taccttacga gagccagttt actttaataa ggaacggtcg gttggacaac tgtttggctt      5880
     ccatcaaaaa gtactagaac cgcatcctac aaaaacctat cgatcagatc agactgtgaa      5940
     catattaaaa attaatacaa ttcgtttgga atgtaatata atcagcggtt catatgttga      6000
     taatacaccg aatcatacgt tacatgagtt tggcattaat gttccacctg ggtataaaat      6060
     gacagtgaca ccacataacc taatttattt accaatcaac tgtgatgaaa taagcacact      6120
     atctatacgc attgttgacc aaaacggtga tttggtgaat ttacgtggtg aaaacgtttc      6180
     gattcgcatg cacattcggc tgatagaatg attatttata ataaaagacg tagccttagt      6240
     cctcagccaa gcattactaa ttgtaaagct atagaaagag gaccatcagt aaaaagaagc      6300
     tcactcactt tgaaaaataa attattttta aagtcgttag gattgaagct tcgagtataa      6360
     tataaaaagt gaaaaggaaa acaatgaacg aaattttaaa tgttcgagaa aaggtttact      6420
     cagatgagag tatttcgaag aaagagtttc atacttattc atcgtataat caaacattta      6480
     agccaaacga tgaaattcga attactatcc aaaatcaaga cttgtacgtg cttcctcacg      6540
     aaagttacct taattttcaa ggaattatta gaaaagattc accgaatgga cctacaactg      6600
     ataatgttac cacttttttt aaataattgt atggcttact ttttggatga aattaagtac      6660
     gaaataaatg gatgtgagat tgatagaaca cgatttgttg gcatgactac caccctaaaa      6720
     aatttatatc tctggataat cttcaaagtc aaaatctatt aaattctgga tggagcagtg      6780
     gagacgaaat ttctacggga ccccacttca acttttctgt accattaaaa aatttgtggg      6840
     gtttgctgag gattataaaa aagttttgtt aaattgtaaa cacgaactag tgttgatgct      6900
     aactaagaat cttggcgatg tgtttgaaca aaccagaaat gaacaaactt ttaaactgga      6960
     aatgacgaat ataacgtgga aaatccccca tgtaactccg agtgattttg caaaaattaa      7020
     gatgtacgat attattaaaa gtggtgtaaa cctaccaatc gcattccgga gttgggattc      7080
     atatgttaac ccgaaattgg ggcatggcag ccaacacagc tggaatgtga aattgtcagc      7140
     taaccgcgaa aaaccacgat ttgctataat tggatttaca ctaaatggag aacttatcac      7200
     aaataattta tcaaacttga aagttcactt gaattctgag tcatatccat atgataatct      7260
     gaatgtcgat tttagtaaga atcagtatgc ccacctttat gaaatgtata caagatttca      7320
     atctagttac tataatcgag agtcacaacc atttttgacc ccaaatgaat ttaaattgaa      7380
     ggcccccatt gttgtggttg atctttcata tcaaaacgaa tcagtgaaaa ctggtcctat      7440
     tgatgtgaga atttcaatag aactcaggac accaagtcat gaaaataccc aagcttattg      7500
     tctccttata catgatcgtt tagttgaata taacccatta aacggactag tacaacgagt      7560
     tgtttaaagt taagaaaatg aagaaagaaa ctgtttcggt tgatgttcaa ggtttctttg      7620
     ataataataa taaatttatt ctaaaggaaa ttggaattgt attcgaaaaa gatcctagct      7680
     tgaataatag ttttttaata gaaccaccat atgattttac tttgctaaat acaaaatcta      7740
     gaaaaactgc aatttggtta accaataaac atcacaacat tttttggaac gatggagaaa      7800
     atagttttcc acaaactcga agatttttga ggacaattac aaacggaaaa ctgattattt      7860
     gtaagggtac tcaaaagaag cgatttctag agaatttttt ttgggaatcg tcagcttgtc      7920
     aatatcgagg aagtgggctg tccctcatta aacaggttta aaggaaaccg gtttccatat      7980
     tgtcaaacac atcttaaggg cggggtttgt gctctaaaca atgcatacaa tattttgaca      8040
     ttttttaagt gtagcatcaa aacaagaaaa taattttata tacatcattt taaagttgag      8100
     gctagatgtg taaagagcta caagaaaaca agattgataa aatgaaattt catgaggaaa      8160
     ttgaccaatt catcgagcaa tttaaaggac agataatcgg tcagcacatt caataccttc      8220
     taaaaacaaa aactatgttt atgaatcaag gtggacatga tctgaaaact acaaactatg      8280
     gtgaacactt tacattttgt aatcctcatt taacatcggc aacgtgcgca tgcgtcttct      8340
     atgcaactcg ccagaacgga gccagaaaat taatatcaat gtataacaaa tcatgttcgc      8400
     aataccaaaa taattgaata aatgtattat tatgctacaa aataaacttg tgacttttta      8460
     tttcgagttt aaattacagg tatacttgtg cgttgtaccc ttttgggaac gtgtcagaga      8520
     tacataggta gtcagtgagc gtgcccctcg cacttgtgtg cggcat                     8566
//
ID   Polinton-2_DBp repbase;    DNA;    INV; 3416 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3416
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 733-733 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. Partial sequence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           730..1107
FT                 /product="Polinton-2_DBp_2p"
FT                 /translation="NSFPLSVCKFFGTPRPDFIIFSIAFVTSPAFFDFIAS
FT                 PHPYLENVSITVNKYLYPLLDDAYAPISTKSACHKSLIPYTITLRLGKFLN
FT                 DGRCSSFTISRLLISLFYLVQMVSSLKIQFHFLILRLV"
FT   CDS           1034..600
FT                 /product="Polinton-2_DBp_4p"
FT                 /note="integrase."
FT                 /translation="MSKRDIVNELHRPSFKNFPRRRVIVYGINDLWQADLV
FT                 EMGAYASSNKGYRYLLTVIDTFSKYGWGEAIKSKNAGEVTKAMEKIMKSGR
FT                 GVPKNLQTDNGNEFYNKQFGELMKRYEINHYSKFSPYRKTDFDEIIQSSKN
FT                 ICKWRH"
FT   CDS           1429..1034
FT                 /product="Polinton-2_DBp_5p"
FT                 /translation="MVLKDYDGNLNVQRKRFKNSLPPIHEDDIVTKSYVDD
FT                 EISKVVQNTSNQISNQLQKQKIYTFRSRINHIENKVIDISKKLEIYSLKTI
FT                 NKIVEDIDKIESNIFNIIIKPTARLKSETESLEKKPFVPNKIKI"
FT   CDS           2009..2959
FT                 /product="Polinton-2_DBp_1p"
FT                 /note="zinc-finger."
FT                 /translation="MAIYCEKCNITLSGNQTWSHHLRTEQHKRNVIEPVDG
FT                 RIKKISQGFTARIVHYVFENVNKNITHPSKFMEEAGEAFLPHLYPLLQSYS
FT                 SIKINFELFGEYALLKEDRECFEIKSFQSKMTILSAYSDLENEYAHHMEKI
FT                 LARMEEFQEKDSGWTLLHLNRLEMNINKYSPIRGSSFIKTPVVLEKKKAII
FT                 NVQNINDEFCFKWSIIAALSNLSKNAHTDDVADKRCSQHKVNISDDIIHVN
FT                 GHTINFSDLEFPLKPTEIGKFMKNNSDISITFFGFDDGVIFGPIFYPPEVR
FT                 VNSINLLLLEEGCKAHYTWIKNLSR"
FT   CDS           3042..3395
FT                 /product="Polinton-2_DBp_3p"
FT                 /translation="KILIFIFKLSNVFSKFIFSLVSSQNSREKSKQWFCPI
FT                 CLNYSLSEEAANRHSEFCGKKVSRLPNIKDATLRYTNYQKEVMIPFTVYAD
FT                 FERILKPNVSQESINLILLIHMYLFHMHTI"
XX
SQ   Sequence 3416 BP; 1097 A; 537 C; 531 G; 1242 T; 9 other;
     taatctttct atgattctag ttgtttttgt gaattctaaa ttctatttaa gaaatgtgta        60
     gacacatgag gcaaagacgg catgtgttaa tttacacata cattccgttg asgtcaatgc       120
     gtaaatttta attgctctwt gctcccagtk gkttwtktka attcttttst wtttgagaat       180
     tctgaaatgt gtagacacat gaggcaaaga cggtatgtgt taatttacct acacatacat       240
     tcaatgcgta aattttaatt gctctatgct cccagatgtt gttatagaat ttcgtttttg       300
     tgtatccaac tatcttctga ttttgaaaaa cctagccaac gcacaaatac atgatcacct       360
     tttcttttta gaatcttttc aatgagataa gtattaggga attttgtttt tttaatttct       420
     tgtttataga atcccccttg aactggatcc cccttcaagt cctcaagtaa atatgtagtg       480
     gggtatgtaa catattttgt actttccgga ctcgaaaaat ttccgttgtc cagtttggag       540
     tataaccttt ttcaaacaca tgtttatata tacttattcg tacatgatcc ccctttttaa       600
     tgtctccatt tacaaatatt tttagatgat tgtatgattt catcaaaatc tgtttttctg       660
     taaggactaa attttgagta atgattaatt tcatatcgtt tcattaattc tccaaattgt       720
     ttattataga attcatttcc attatctgtt tgtaaattct ttggtactcc acgaccagat       780
     ttcattattt tttccattgc ttttgtaact tctcctgcat tttttgattt tattgcttca       840
     ccccatccat atttagaaaa tgtatctatt actgttaaca aatatctata ccccttattg       900
     gatgatgcat atgctcccat ttcaaccaaa tcagcctgcc ataaatcatt aataccatat       960
     actataactc tacgtcttgg aaaattctta aatgatgggc gatgtagttc atttacaata      1020
     tctcgtttac tcatatcttt attttatttg gtacaaatgg tttcttctct aaagattcag      1080
     tttcactttt taatcttgcg gttggtttaa taatgatatt gaaaatatta ctttctattt      1140
     tatctatatc ctccactatc ttattaatag ttttcaggga ataaatttcc aattttttag      1200
     aaatatcaat cactttattt tcaatatgat tgattcgaga tctgaatgta tagatttttt      1260
     gtttctgtag ttgattagaa atttgattag atgtattttg tactacttta cttatttcat      1320
     catcaacata ggattttgtt acaatatcat cttcatgtat ggggggtaga gaatttttaa      1380
     atcgtttcct ctgaacattt aaatttccat catagtcctt aagtaccata tactttggaa      1440
     tttttctaca cctcgtttta tgtcccgtga gtactctttc tcatttataa aacaaccaaa      1500
     cttgtcaact gtcattttaa ttataaaata aataacgaaa gaatggtata tttatttatg      1560
     atccacatta attactacaa cttcgtcttt attttcacga cttgcaaatg gacttttttg      1620
     aagaatcact ccatctattt ctatatgctc agaacgaacg gggtgtgggg tgtttttaat      1680
     atgtttgttt aaatagttat ttagattttc cggtctaatt ctggacgtaa ggtatacttc      1740
     ctgtgccaga acttgtgaaa tcatttcaca cattttttaa atgtgtagaa accaccccgg      1800
     ttattcattc caagtatgga gagcacctat catcctgtgc atgggcatat gatgattgta      1860
     aagttggacc ggacacttgc agatgtatgc atgttgaaaa gaaggaagaa gatgccttaa      1920
     aattgatgga acgatatatt aatttattta aaagactcga tggaaactaa tgtaactcaa      1980
     atatgactat gaataaaaaa aaattaaaat ggcaatctac tgtgaaaaat gcaacattac      2040
     cctatcgggt aaccagacat ggagccacca tctgaggacg gagcagcata aaaggaatgt      2100
     gattgaacct gtggatggac gaatcaaaaa aatttcacaa ggattcacag cgagaatagt      2160
     ccattatgtt tttgaaaatg taaataaaaa cattactcat ccatctaaat ttatggagga      2220
     agcaggagaa gctttcctac ctcacctcta ccctttattg cagagctatt cctcgataaa      2280
     aataaatttc gaactattcg gggaatatgc tcttttaaag gaagatagag agtgctttga      2340
     aataaagtca tttcagagca aaatgacaat tttaagtgcg tactcagatc ttgaaaatga      2400
     gtacgcacat catatggaaa aaattttggc gaggatggag gagttccaag aaaaggatag      2460
     tggatggact ttactccatc taaatcgatt ggaaatgaat attaataaat attcacctat      2520
     aagaggatcc tcctttatca aaacaccagt agtcttagaa aagaaaaagg caataataaa      2580
     tgtgcagaat attaatgatg aattttgttt taaatggagt ataattgcag cattaagcaa      2640
     tttatccaaa aacgcacata cagatgatgt agctgataaa agatgtagcc aacacaaagt      2700
     aaatatatct gatgatatca ttcatgtcaa tggccacaca ataaattttt ctgatttgga      2760
     attcccattg aaaccaacgg aaatcgggaa atttatgaaa aataatagtg atatcagtat      2820
     cacgttcttc ggcttcgatg atggagttat ttttggcccc attttttacc ctcccgaagt      2880
     gagggtaaat tcaataaatt tacttctgtt agaggaaggg tgtaaagcgc attacacttg      2940
     gataaaaaat ttatcaaggt aagttttatt attattatgc taacaatttt atatatatat      3000
     atatacattt atatatattt ttgtttttgt tttttaatta aaaaatttta atatttattt      3060
     ttaaattatc taatgttttt tctaaattta tttttagttt ggtttcctct caaaattcga      3120
     gagagaaatc taagcaatgg ttttgcccca tttgcttaaa ctattcactt agtgaagaag      3180
     ctgccaaccg gcattcggaa ttttgtggga aaaaggtgtc cagactcccc aatataaagg      3240
     atgctacgct gcggtataca aattaccaga aggaggtgat gattccgttt acggtatacg      3300
     cggactttga acgtatcctt aagccaaatg taagtcaaga atcaattaat ttaatattat      3360
     taatacacat gtacctattt catatgcata ctatataaag tgtgcatatg ataata          3416
//
ID   Polinton-2_DEl repbase;    DNA;    INV; 17525 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.08, Created)
DT   25-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-17525
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4044-4044 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
SQ   Sequence 17525 BP; 6350 A; 2702 C; 2633 G; 5839 T; 1 other;
     agtagctaca actaatgcat tcggccttta attttattgg ggttgaaaag ggattcagta        60
     atgccatagg tttcaccgaa atgttcagtg tgcatggttc tgtatcccaa gatttcggtc       120
     accaaaaaca caggtacttt tccctatacc taaaaaatag cctttgtata cacatagata       180
     ggataaacct aaaaaatagc ctttgtatac acatagatag gataacggaa tttctgattt       240
     taactagaaa ctatcctgac ggctgagagg cagagaaaga gagaaagtct ctcttagaaa       300
     catttgacta gctcaactag atactaaatt attttataac atgtatatta ataatttcaa       360
     gtcagagcgc cttaaattaa aagaccgtaa ttatatatta tatttattaa ttatatattt       420
     taattatata ttataataat attattctta aacaatttaa actgtctaaa taaaaattta       480
     aaatatatat tattcataaa aattaactga cgattttaaa tttttatcat attcttacat       540
     agttaaaatt attaagaaaa aatgttgttt gttatttatc atatttttaa atcaactcca       600
     gcgctcaacc ggtacaaata cagcgcctgc gctatcggat taaatgttat gtaatgtaaa       660
     acaaaaattc taggctgtta cttaacatat tttaaaatca gatcctgatc tcaacagaat       720
     caaaaacagt ttcagcggtt aacctgttca aacgactatt ttacattcca gaattttaca       780
     ttagttcact atttcgccgc cagggggcga caatgagagt aaggatatat gcaacccgcc       840
     aaacggccaa agcgccatct atgtctcagt atgcgcggct tagctcgtaa agcgtcatct       900
     aagagtcatt aattttgggt tgcgtcttga ctatatgagg atcaatttga caggatccct       960
     ttgaaaactg tgattacata tatccttact ctcattgtcg ccccctggcg gcgaaatagt      1020
     gaactaatgt aaaattctgg aatgtaaaat agtcgtttga acaggttaac cgctgaaact      1080
     gtttttgatt ctgttgagat caggatctga ttttaaaata tgttaagtaa cagcctagaa      1140
     tttttgtttt acattacata acatttaatc cgatagcgca ggcgctgtat ttgtaccggt      1200
     tgagcgctgg agttgattta aaaatatgat aaataacaaa caacattttt tcttaataat      1260
     tttaactatg taagaatatg ataaaaattt aaaatcgtca gttaattttt atgaataata      1320
     tatattttaa atttttattt agacagttta aattgtttaa gaataatatt attataatat      1380
     ataattaaaa tatataatta ataaatataa tatataatta cggtctttta atttaaggcg      1440
     ctctgacttg aaattattaa tatacatgtt ataaaataat ttagtatcta gttgagctag      1500
     tcaaatgttt ctaagagaga ctttctctct ttctctgcct ctcagccgtc aggatagttt      1560
     ctagttaaaa tcagaaattc cgttatccta tctatgtgta tacaaaggct attttttagg      1620
     tttatcctat ctatgtgtat acaaaggcta ttttttaggt atagggaaaa gtacctgtgt      1680
     ttttggtgac cgaaatcttg ggatacagaa ccatgcacac tgaacatttc ggtgaaacct      1740
     atggcattac tgaatccctt ttcaacccca ataaaattaa aggccgaatg cattagttgt      1800
     agctacttaa agctgtagtt gtattaattc atggaactac tgattgtaaa cccatttaat      1860
     taatagtatg agatctcgac aagatctcca ccaccatata ctctatggtt gaaccaccca      1920
     agtaaacaga acgcatctac atacacacaa ctattcagtc gccatcacag ttgtttgaga      1980
     accatgtact tctagaaatt ttccaccctc acacacacac aagcamacac gcacccacaa      2040
     tcccatatgt ttatcgaata tatacgagtc tcccctaccc tattctccaa acagagatag      2100
     ttaaaaaaga gtcttcgttc aattatatca accaggtaaa agttagttct ttggatctaa      2160
     ggaacgaata gacatcgtcg gtttactgcg ttctgtttaa aactctattt tcgtttttaa      2220
     tttttgtgtg cttaataaaa aagtataaac aaaaaatatt aagcaatggc ttcagtgcag      2280
     tgcgatattt gtaataacaa aattaatctg tcggagttcg aagttcatta cgaggagtgc      2340
     tcaaaacctc gaaatgctat tgcaccaaaa aataagatta gttgtgattt atgttcaatt      2400
     gatgtagatt gtgaaaaatt tagtgatcat tataaaatgt gtctaggacc aaaaaatgct      2460
     ttcaatgcgc taatgcaagc ccgggccaaa aatacaaaaa agatagatat caacgaatat      2520
     gatattattg accagctacc atctacttcg agtgctggaa ttaagcgaag tagaaatgat      2580
     gaaaattccg ctcttgagag taatccaaaa aggattaaat ctcaaatcga aattatctgc      2640
     gatctatgtg gagaaagata tccccaaacc ggaaaaatca aacatttaaa atcggaaaag      2700
     cataagaatg caattgctag aagagtaaca gatgttgaaa taattcatct ggcttcagat      2760
     acagaattcc caatcaaatc ctatagggtt caatcaacca gcacatccaa ttttattgat      2820
     ataaaagaat tctataatca atgtcaaaat aatattaaac aaattcttac tagatggcta      2880
     gaggaataca tatcaataaa attcagttta caagtatatg gactatatgt aaaatacaca      2940
     gaggagggag agtgtattga aacctttaaa cattttggaa cggcctacat atctgtgtat      3000
     gatgttgata acttacctac tagaattgat gaaggtatcg attatttatc aaatgctagt      3060
     agtgagttcc aggaaagaga ttctggatgg gcaataaaag catttaaata ttttgatatt      3120
     acaataataa aactggagca cattcctgta agaggatata tttcagcacc tcctactatt      3180
     aaggctaaga acgctttaat taatgttaaa aacaatgata attattgttt taagtggagt      3240
     atactagctt ctatagctta taaaagtcat tctttggaaa cattttctaa ccccagacaa      3300
     cggaggtttg ctagagaaca attacaactc cccataaaat atataaatgt taacatttca      3360
     caagaaaaaa taaagtacaa acaagtggaa cttaattttt caggaataga gtttcctatt      3420
     acgaaaaagg ggataaaaaa atttgagaaa ttgaacccca actttagtgt taacgtatac      3480
     gaacacgatt ctaaaggaac acaaattgtt ggaccagtag taagaactga ttttaagggg      3540
     agaccatccc atatcaattt gctggcaatt tcaaacaaca atttgatgca ttatgcttat      3600
     ataacctgta tgagaacact atgctactca cagcattcaa aatctagaac ccctgcctat      3660
     ttttgtgaaa actgtttaca gtttataacg tcaacaaatt ctacacatga taccaaggaa      3720
     tgcggtaaag tggctgcgga atatccaaag ccgaatacca taacaaaatt taaaaatttt      3780
     tataaaaaac tatcaccacc ggtagttata tatgcagaca ttgaagcggt attaaaaaaa      3840
     gttcacacaa cccaaaacga tccatcaatt tcatctacaa cgacatctca agagcatatt      3900
     gcttgcgctg tatcattttt tgtggtacat aaatataacc caagtcttaa tagacaatgg      3960
     acctatgaag gtaaaaacaa tattacaatc taaagtgatt taatattaat aaatatattt      4020
     tcttttaaag gagatgattg cattaaaaag ttttgtcaag cactcaagga tactaccaag      4080
     ggcttatacc acaaatattg gaccacccaa acaaggctcc aagatgaatg cgaaccgatc      4140
     tccgtcgaca acgataattg ctgtgcctgt gagttaccga tacgggataa cgcagaaatg      4200
     ttttatgatc aattctctgg tagccatata ggctatatcc ataaaaattg taaagtagat      4260
     tataagttaa ctgaagcgtt tttcccagta gtttttcata acctttctag gtatgacatt      4320
     catttattta ttaaggaatt aggaaataat ttaaaaccga ttccttgtaa taaggaatta      4380
     tatattgctt tgacccaaac tattagattt gatgaaaaag attattacaa aattcaattc      4440
     atagattcca acaggttttt aaattctagt ctagaaaaac tagctagcta catggatgaa      4500
     tctaatttta aacttttaaa aactaaattt caaggggaga aatttaatca aatgagacaa      4560
     aaaggggtat tcccatatga ctttttagat agttttgaaa aaatggaaga aaaaaatctc      4620
     ccgccaattg aatatttcta taattcccta acagaccaac cttgttcttt tgaggcttac      4680
     caatttgctc aaaaggtttg gtcaaccttt aattgtaaga gtattaggga ttatttaaaa      4740
     ttgtatttag aaagtgatgt tatgatttta gcagatgttt ttgagaattt tagaataata      4800
     tgcctacaaa tatataagct tgacccagtt aattatgtaa cagctccatc aatttcctgg      4860
     gatgctatgt taaagttcac gcgaaccgaa ttaactttaa taagcaatcc tgatatgtac      4920
     aattttatta aaagatctat acgaggggga ttgactcaat gcacccaaag aatttcgtgt      4980
     gctaataata agtacatgaa agattttgat agtaacaaac ctgttaactt tttagcttac      5040
     atagatgcta ataatttata tggatgggct atgagtcaac ctcttcctat atcagaattt      5100
     aaatttttga ataatctgga aattaatcaa ttcgatatta aaaatatatc aacagaaggg      5160
     gattacggat ttatgttaga agtagacctt gaatacccta ctgaaattca tgatgctcat      5220
     aattcgctgc ctttttgtcc tgaaagtaaa atacctccag actccaaaat atcaaaatta      5280
     attgcagact tatgtaataa agaaaattat attattcatt taaaatatct gcaactttgt      5340
     attcaacatg gacttaaaat aaaaaaaatt cacagaatac taaaatttag acaatcttgt      5400
     tggttaaaac cctatataga tttaaataca aaacatagaa aattagctaa aaatgaattt      5460
     gaaaaaaatt tctataaatt aatgaataat gctatatacg gaaaaactat ggaaaacgtt      5520
     gaaaagagac gagatatagc tctagtttcc cattaccatt caaaacagaa ctctcctgga      5580
     tttagacaac gaatagctag tcacaatttt cacagtgtag cactttttgg acccaattta      5640
     gctgcaatag aagccacaaa atctcgcata cgttatgata aacccatata tattggttca      5700
     agtgttttag aactttctaa atggttaatg tatgattatt tctacaattt tctatcgatt      5760
     aagtgtcctt catcaaaagt tatttatatg gatactgatt cctttatatt gtcaacgcaa      5820
     gaagattttt ataaattaat caaagaaaat ctgaatcggt ttgatacttc aaactttaaa      5880
     caaaataaca tctataatat acctcaagtt aataataaag aattgggttt aatgaaggat      5940
     gaaaatgcag gtcaaataat gaagtctttc gcagggttaa aggctaaagc ctactcgctc      6000
     ttagttgtaa aggaacctaa tcaaaattca gatcaaagtc cttatgattg tattaaaaag      6060
     ataaagggag ttcaaaaatc ggttgtaaat aaattatcac atactaatta tatagaatgt      6120
     attaaacaaa agaaaacttt ttatggtgaa caacgagtta ttagaagtcg atctcataac      6180
     ctttatactg agattgttaa caaaataagt cttaattata aggatgataa aagatttata      6240
     ttatccgata atatacatac gctagcttac ggtcatttta aaattagaaa tattttagat      6300
     gagaattaag attaatcaaa atgtatttaa aatatattaa tgtatacatt gtaaatttgt      6360
     aatatatata tatatatata taaatataaa taaataaata aattattatt taaaagaaat      6420
     aattttgtgt atgtgtttct attccatctt attatttcag cagattttgt ttatcgatcc      6480
     atgaagcgtg gctttcatca aaaccaaacc acttaacttt aagttgattc tttcgtttct      6540
     ttaaaatttt ctctactaaa aatgcattag ggtcttttac tcgttgaagt tccggttcat      6600
     aaaatgatcc attaataggt tcactcttat aatcctccaa gtcatatgtt acaggataag      6660
     ttgcctttac ttttattatt ttgaatacct cagccgtaaa attgggttcg tatcctttca      6720
     taaatacacc cttatattta cttattcgaa cgtaatcccc cactgaaaat ttgtgttgtg      6780
     gaaatatctt gggcatatta taaactgatt ttaatatgaa ttcttcattt ttagggcata      6840
     catccacagg attcattttt attgttctgt ggtatgaatt attatattca tacacaagat      6900
     ctttgatttt gtgtatccat atatattttc cctgcatact aaacattttc cacattttat      6960
     tttttaatgt tctattaaat cgttcacata tagaagcctt taaatgtgtg taggtatgat      7020
     aatgatttat ttgtttttgt ttcatcaaat tttcaaatgt agaattaaaa aattcttttc      7080
     cttgatctga ttgaatattt tttggcgtag ttttagctgt tttgaatata gttttcattg      7140
     cttcaactac atcctgtgca gactttgatt taactgcgat ggcataagcg tattttgaga      7200
     acgtatcaat aacagtaagt aaatacttat atccaccatt ttctttacta aaaggaatca      7260
     tttcaactaa atcaatttgc caggtatcat ttatcccttt ttgtacaaat ttacgacggg      7320
     taaagttttt tcgagcttgt ttatgaattt cattaacaac ttgctgttta ctcatttctt      7380
     tattttttat taggtgatga tgaacgttta gatattagtg attgcttata tacaagtaca      7440
     tcgtttttta tttctttacg catctttttt gaaatttcaa aacacaatcg tgttaaatct      7500
     attttaacat ttttatcgta agatccctcc aaatcagata attgaacatc atacttttgt      7560
     aatgaaacac actttggaat aatgtgatta taataaagat atataacttg ttgacttaat      7620
     attgaattcc aacataaaaa tgtagtaaaa aatataccta atctcagtaa ggatctccag      7680
     gactcactat caaattcaat tttgttaccg tactggttta ttactataac atactgctta      7740
     tcagatttcc gaaatctaaa gttacattta atagtagaca tgattgggtg atcaataatt      7800
     gtatcgggca ttaagaaatc gtattgatca agttttagtt gaatatactc cttgtatgta      7860
     agaagttgca tccattgatc tttttcaaat ccaacgaaat tatttttact ttgttgcatc      7920
     cagatcattg gtacgaattt tcgtgatgtt gacagcccgc atttcaactt taaattttgt      7980
     acaacatagt actcgaaccc gaaaatgact tcatgatcct gattctttcg gggtttttta      8040
     ttgcttttaa cttgacacat gtccatagtg gttgagctct attttaaaac tgttagtttg      8100
     aatcaatccg accgctatat aaagggaagt gttcagacag ttctacactc agttgattaa      8160
     aaaatctcat cccaccatga acaccgtaga tcgaagttca agcgtaatag ttgatttcca      8220
     atatttactc ggaaacaaca aacaaatttt tgtaaaggaa cttgcattca tgcaagccgg      8280
     aacagtgatt cctaattttt ttcatttcca accaccattt aatataaagg aattggataa      8340
     tgaaacaatt aaacagcaac acttaaatcg acagaatatt aatggattgg attggtcagc      8400
     tggagatgta ccatatacct gtttagaaga aatactcact cccctaaata agtatagttc      8460
     agttattgtc cgtggtgaaa ttaaaaaaca ttttctatct aagtatttat caactacaat      8520
     tgttgatatt gatattggaa aaagcttaac tcaactacct aattttttca ccaattgtaa      8580
     aattcacaag aaaaagttac cacttcgatg ttcattaaat aatctgttta agctttttgt      8640
     aatcttagaa cattccaact atgaagtata ttgtaatgct aacatatatg tttaaccatc      8700
     agtaataaaa ttatcactga actaagaggc tgtctttatc aatggattcc ttcaagggcc      8760
     tgtttgggaa tgacccccgc aaaaagggtt atactcaact catttattgt aattattgtg      8820
     gatctgattc tcatttcgaa aagaactgcg ctaaaaaacg tgatcaggaa aaatctaaat      8880
     aaacacatat tgtaattcaa ggataatttt tatgaaaata aaaatgttca ctcaatttat      8940
     acatcccttc acaatgttaa tttgtggccc ttcaggatct ggaaaaacaa cctttctcga      9000
     aaatctaata aacaaaaaga atgatttgct aaatgtttca gtagatcgaa ttatttggtg      9060
     ttatggagag gagagtgcta aacctaattt taataacgta gaatatcata aaggagttcc      9120
     cgaaataatt gaaaatgaga ataaggaacc tattctttta atattggatg acttaatgat      9180
     gggggcattt aataaaagtg tatgtgaact gtttacgaaa ggatcacatc atagaaattt      9240
     atcagtagta gtcgtaactc aaaatatatt tcataaatca tcgcatacca gagatatctc      9300
     actaaacaca aaatacatag ttgtttttaa aaatcctcgt gataaacttc aatttcaatg      9360
     tttagccaga caaatttatc cagaaaaccc gtcagaactt ttcagaatat ataaagaagt      9420
     aacagagcaa cctcatggat atttactaat tgatctcacc caaggaatca acgatctctt      9480
     aagatttaga actgacattt ttaatttaaa atttacagtg tgttattcag atgaaaatgg      9540
     tttacaaaaa gaacctaaat cgcttgaaag cgaacaaaca tttattgtat gtactcaaaa      9600
     aggctaacaa caaactacgt aaggcaatta taagtaatag tgatagtgag ttggtaaaaa      9660
     cattagtaga gatcgtatta aacacattac acggaaatca taagcttacg aaaaaccatt      9720
     taactgcact caaaaagtat aaaaaagtat tacgatattt atcctgtcca aagcgttctt      9780
     taaattctaa gagaaaagtt ctaattcaaa aaggtggttt cttgccaatt ctaataaatt      9840
     cattgctttc tggaattttt ggaaaaattt tgaatcatgt ttaaaaataa acataattta      9900
     aacaaagtaa ttttaatgaa ccccatcact tatcagaaat tggttaacga aaatagaggt      9960
     aatgaattaa taagtttaaa atttttacca attttaaacg atcagcgaat aagtgatttc     10020
     gataaatgga taaaaattcg ccaagaattg tcttattacc aaaataaaaa acgaaataaa     10080
     tcatggcatg gacaaaatga tcaaaagaca cctcttacat taactagacc taatgagtcc     10140
     caaacaattg attggattga tgaaaaacct agttcttcgg ggactaaatt taaatttgat     10200
     gaatcacttc caaaaaaggt tgaacttcct gacttaccat ctgaaagcga agatgaagat     10260
     tttaagtcga atagaaaaaa tactttattg gataacaaac gaaaaataag tgaaacttcc     10320
     tttttagata ctaatgaaaa tgttaagaag atggcagtga caaaagtgaa gcttaatgat     10380
     aaacaacgca aattaagagt aaatttaaaa aaaattaaag cgggaacatc tccatttcaa     10440
     aatctaagat atgtaacagg acgtgaaaaa ttaagtagat cggttagaac tagaaatcca     10500
     gtacaaatag gaaaaaacaa acttaattgg acttcatacc aataattgcc atatttaatt     10560
     ctaaaaatgg gttatttaca tgagttttat atcaccttac tcagtaatga ttcactaaat     10620
     gtatttcctg ataatgttaa atgtgcattt actaatattg taaatattcc tgaagatatg     10680
     aatgatgatt gggaagttgg aattacagac atttatctaa ataattatat caaacatgta     10740
     tcagataaag aaataaatac ttctaaagat atagaaaacc ccgaagcaga atttataagt     10800
     ttagtaaatg ctgaaacatt tagatatact aatgtaccca ttgaatcaaa aacacctgaa     10860
     cttggattaa tttttattta caccgatata atcaaaccga gaattgttgg gagtaaaaga     10920
     ccccgttgtc ttcgtgtttt acattataat ggaaaagaaa aaaatattca gttcaaaaat     10980
     attgaatatt acccgttaga catctggtca ccaaacgaga tctcaatttt aattacagat     11040
     tcaaatggat ataaggtacc gtttgaaaca tcggtagtcc caatatttac tactcttcac     11100
     tttagaagaa ggaaaagatt tatactataa ataatacttg ctcgattata agtaactcag     11160
     aataaaaata gtcaccatgg tgaaatctta tcatcaatat tatttaaatc agtctggtgg     11220
     aggattaagt aatataggaa gtctttatat atcacctcga atagttcaac aagggcgagg     11280
     aatcgggaac ttttttagcg gtctttttaa ctacataaaa ccactttttc tttcgggctt     11340
     aaatgctata aaagatcaag ccactgaaac tggaaaagct gtaattaatg atctcgggag     11400
     aaaaccatta cgaaatattg ttcaagaaca aagtaaaatt gctttacaaa atctgtcaaa     11460
     taaagcaatt gataaaatga ctcgcttcca aaatggtaat ggaaaacgga ataaaaagcg     11520
     tagtgcaagg aaaaaaagac ttcattcaac gtccaaaaca catagtaaac gtaccaaaac     11580
     gccgcaaaaa agaaaaaagt tatcaagaaa attaaatata agcgatatat tctctaagac     11640
     acaatgagta accatattga atgtatgaaa agtgaattgg atttgtttgc tccgcaccct     11700
     acacaaagct ctattctaaa aactgaagaa gtatcataca atccaattgc atcattagat     11760
     agtgcttctt caatcgaatt tgtttgtttg ggtaacggtg aaacatatag agatttatca     11820
     agtgtttata tacgtcttgt agtacaatta agaaaaaatg acaacagtgc catcgaagga     11880
     aataccgtgg gtgtagtaaa caatattcta cattccattt ttcgaagttc ttcagtttat     11940
     ttaaataaca tattggtatc acagagtgat aataactacc attatagagc atatttgcag     12000
     acagttttaa attacggtag tgatgcctct gaaagtcact tatcagctca aggttattat     12060
     ccaaattttg gacgaataac tgcgggtcaa tatgtttatc ccacaacaaa tgatacccta     12120
     aaaaatatat tcaaaaatag taataaggtt gaactatttg gtaaagttca cggagatatt     12180
     tttaatcaac ctaaactgct cgtaaacaat gttgatttaa ggattaattt caatattgag     12240
     aaaactgcat tttatttaat ggaaaatgaa tcggaatcaa atctaaagat attagaagct     12300
     caacttttca tgaatcatat aactatcaac cccagcatac tattagctca tcatcatgta     12360
     ttacaaacca aaaatgctat atacccattt aacaaagtcg aagtaaagtc ttttacaata     12420
     tacccaggaa acaatacttt atcaatagat aacgcagtta tcggtcagct accaaatttt     12480
     ttagcatttt gtatggtaaa aaaccgttca tactcaggaa atcgtagttt ggatccattc     12540
     gatttcgaac attttaaaat tcaacgattt aatcttttgg taaatggagt tcaagttcct     12600
     tctcaagcct tagagtttga ttactcgagc gctgaaaacg cacaaagtgc aagaggttat     12660
     aatatgctat ttagaggaac tggaataaaa cattacgatc gaggactgca aattacaaag     12720
     gaaatgtttg ataaaaatag ttttatatta gcctttgact taactgctga tcattcaaac     12780
     tcaacggttt gctcgaattt aatatctcaa ggaactatta ggattgaagg tcgattttca     12840
     gtaccacttg ctgaagcagt gacttgttta gtttattgtg aatacgattc aatgatagat     12900
     attgataaga atcgaaatat ccgagttctt ctttaaatat gaatacatta caaatacata     12960
     atttactgtc taagaatgca tatacaaaat ctatatttaa aggagttttc ccatcagatc     13020
     aactaccatc aactatttta aagtttccag cgctaattat tgcaaacact gatacttcaa     13080
     cccaaccagg aactcattgg attgcattcc atttcaaaag taatagatcc gcagaatttt     13140
     ttgattcata tggccaatat cctcaaaaaa aagagttcat tacattttta agaaaaaatt     13200
     cggttaaata tttgtttaat aaacagcaac ttcaaggcta tttttcaaac acttgtggtc     13260
     attattgtat actatacggt ctgtttaaat gtaaaaaaaa atcattgaac tgcttcctaa     13320
     aaaattttaa gcgaaatgac tttttttata acgataagtt aattctgcaa atgtttaaga     13380
     aatattttaa aaaataaaaa gacaagtaat ttttaattaa aatcaattaa gattatttat     13440
     tgtttcggat ctatacagtc tctgattcaa cttataatat tttaacataa tattaagggc     13500
     ttcgtcttgt aatataggga gtctatgaca ttggcatgtg tctggtccaa cctctgcatc     13560
     atcatcactc cagggacaaa gcttgtagtg aaatccaaat tttgagtgaa ttaactcttt     13620
     ttcagccaaa tcctccagtg taatgcgtaa ataatccagt ctagtaacgt gctcctcgaa     13680
     aatcatatcc tcgaactgaa tcaaaaacaa ctgaatttgt ttagccagca tttttgtttt     13740
     gttgggtttt aatatgattt cactccttta gattgagaac cagactgatg tttaaaagag     13800
     aatctttggg gtttatatga ggaaattctc actatatact ttatttattt aaagacaaaa     13860
     attcaatgtt tgcaggactg tatttgttca tatctttccc cttatataca agatgagaaa     13920
     taccattctc ttttaatttc ttaaagggtg tcttagtaga aaacttgttt acataatttt     13980
     ttggtagaaa aacccatata tgctcgttgt ccttgtctgt taaataaaga gctattttat     14040
     ttccatatgg tgttttcttt agtttacatc caatgatttt atattcaaat ccaatacata     14100
     gattttcaat ttttgtataa ccaatcagag gttttaactc atttagggtg gatatgaagt     14160
     cctgaagaat caagttaatt atcatattat attatataaa catttaaaca cacataccat     14220
     tttgaagtgg gattgtagga attgattatt ttctggtaaa taccgaatgt gtactaattt     14280
     acttacagaa taatacatag ccttttatac tctcgaagcc cttatttaca acgaaaatag     14340
     tatataaata tatactatat acaaatatat atatatatta tgtacaatag tatataaata     14400
     tatacaatat acaaatatat attatggaca aaagtatata aacacatata ttcaaaattt     14460
     caattcaaaa tcatatttaa aggtcatgtt catctgatat tcctcagttc attatagaat     14520
     cggaatggaa gcgtttattt gtgagttgtg tgtttatccg aaaacctttt ctactcgtaa     14580
     tggtttaaaa caccatacct tgaaaataca caacttcagc tatccaaaat cgaaatcgtg     14640
     ttattatcaa tgtggttttt gtcctgaaat aaaaaaattc tggctgcgac acaatttgta     14700
     tatgcataca ctactgaagc ataacttcca tcttaaagaa aacatcaaat ttatgtacga     14760
     acattttaat gaaccgaaca taactacatt aaaacatcaa aacaatgtta agttcgatgt     14820
     atttccagct atccaaaatg aataaaaaaa atttttaaat attgattttt taatattctg     14880
     tttatttttc ttattggttg caaggttcct gttaaattcg aagtattcca agatatttaa     14940
     aataaataaa aagatttttt aaatattgac tttttaatga tttatttatt tatttttatt     15000
     gtttacaaag ttcttgattc caactatcat taagtaaatc taaataagga tttgggtcag     15060
     catcttccac tccatcaaat acgctgtcat cgtcagggaa gtccggtatg gtttccacct     15120
     ctattggttg tccaaaggct gtaagcatcc aggcgaacga ttcttcttcc acattccgtc     15180
     gtaattggga gtccaaatac tcctgggagc tcataccgat aggattttca tccaattcta     15240
     agttttgcag gtcctcagga atttcttggg ttgatgtaat agctggataa aatgagcgct     15300
     gaatattcat atcaagatcg gcagctgcat caacatcgtg aactaacttc tcagtgatgt     15360
     catcaacgaa gatcacggaa gtatctgatg tgttcatgtt tacaaattgt gtttacaaat     15420
     tgaaatgaat attgtaacca tggatgcacc acattttata tccaaaaatc cagagtatcg     15480
     acttatttaa agatgtagtt cgattggtta acggtagtgc gtgtttgctt gtgtgtgtga     15540
     gggtggaaaa tttctagaag tacatggttc tcaaacaact gtgatggcga ctgaatagtt     15600
     gtgtgtatgt agatgcacca tagagtatat ggtggtggag atcttgtcga gatctcatac     15660
     tattaattaa atgggtttac aatcagtagt tccatgaatt aatacaacta cagctttaag     15720
     tagctacaac taatgcattc ggcctttaat tttattgggg ttgaaaaggg attcagtaat     15780
     gccataggtt tcaccgaaat gttcagtgtg catggttctg tatcccaaga tttcggtcac     15840
     caaaaacaca ggtacttttc cctataccta aaaaatagcc tttgtataca catagatagg     15900
     ataaacctaa aaaatagcct ttgtatacac atagatagga taacggaatt tctgatttta     15960
     actagaaact atcctgacgg ctgagaggca gagaaagaga gaaagtctct cttagaaaca     16020
     tttgactagc tcaactagat actaaattat tttataacat gtatattaat aatttcaagt     16080
     cagagcgcct taaattaaaa gaccgtaatt atatattata tttattaatt atatatttta     16140
     attatatatt ataataatat tattcttaaa caatttaaac tgtctaaata aaaatttaaa     16200
     atatatatta ttcataaaaa ttaactgacg attttaaatt tttatcatat tcttacatag     16260
     ttaaaattat taagaaaaaa tgttgtttgt tatttatcat atttttaaat caactccagc     16320
     gctcaaccgg tacaaataca gcgcctgcgc tatcggatta aatgttatgt aatgtaaaac     16380
     aaaaattcta ggctgttact taacatattt taaaatcaga tcctgatctc aacagaatca     16440
     aaaacagttt cagcggttaa cctgttcaaa cgactatttt acattccaga attttacatt     16500
     agttcactat ttcgccgcca gggggcgaca atgagagtaa ggatatatgt aatcacagtt     16560
     ttcaaaggga tcctgtcaaa ttgatcctca tatagtcaag acgcaaccca aaattaatga     16620
     ctcttagatg acgctttacg agctaagccg cgcatactga gacatagatg gcgctttggc     16680
     cgtttggcgg gttgcatata tccttactct cattgtcgcc ccctggcggc gaaatagtga     16740
     actaatgtaa aattctggaa tgtaaaatag tcgtttgaac aggttaaccg ctgaaactgt     16800
     ttttgattct gttgagatca ggatctgatt ttaaaatatg ttaagtaaca gcctagaatt     16860
     tttgttttac attacataac atttaatccg atagcgcagg cgctgtattt gtaccggttg     16920
     agcgctggag ttgatttaaa aatatgataa ataacaaaca acattttttc ttaataattt     16980
     taactatgta agaatatgat aaaaatttaa aatcgtcagt taatttttat gaataatata     17040
     tattttaaat ttttatttag acagtttaaa ttgtttaaga ataatattat tataatatat     17100
     aattaaaata tataattaat aaatataata tataattacg gtcttttaat ttaaggcgct     17160
     ctgacttgaa attattaata tacatgttat aaaataattt agtatctagt tgagctagtc     17220
     aaatgtttct aagagagact ttctctcttt ctctgcctct cagccgtcag gatagtttct     17280
     agttaaaatc agaaattccg ttatcctatc tatgtgtata caaaggctat tttttaggtt     17340
     tatcctatct atgtgtatac aaaggctatt ttttaggtat agggaaaagt acctgtgttt     17400
     ttggtgaccg aaatcttggg atacagaacc atgcacactg aacatttcgg tgaaacctat     17460
     ggcattactg aatccctttt caaccccaat aaaattaaag gccgaatgca ttagttgtag     17520
     ctact                                                                 17525
//
ID   Polinton-2_DEu repbase;    DNA;    INV; 16883 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   09-FEB-2022 (Rel. 27.02, Last updated, Version 2)
XX
DE   Polinton DNA transposon from Drosophila eugracilis: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DEu.
XX
NM   Polinton-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-16883
RA   Kojima K.K. and Jurka J.;
RT   "Polintons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 997-997 (2012).
XX
RN   [2]
RP   1-16883
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (09-FEB-2022).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   [2]: Sequence updated.
XX
SQ   Sequence 16883 BP; 5886 A; 2817 C; 2866 G; 5310 T; 4 other;
     agtagctaga acataggaca taggctgatt atagtacatc agttttacat ttagctgact        60
     tgattttaaa attttaaata cttgtatgca ctgatactcg gtatgtatgt gtcgcctgag       120
     tcaggtattc tataagatcc tccctccatt ggttttctgg aagacgtgac cctttgctat       180
     cccttggatg agtccacctg agaactcacc cctaccctca agtgtgcgct caggtctgct       240
     tgtgcgtgga ggtgcgaact caccccaacc ctcaagtgtg tgctgatatc tgcttgtgcg       300
     cggaggtgta aaaatttatt gttaagcgtt ttaatgaaaa gttgcagttt ttaacttaca       360
     atcgtataaa gcataccact ggaaagggct tgaaaaatgc tttccaatga caccaaacac       420
     attttttttt ttttttagtt gagggcctat attgagaccc ccaattaccg aaatttttgc       480
     ctttttaggg tagtagtgag cacttggggc atcggcgaat tggcactcgg ctaaaatggc       540
     actcggcgaa atggccctcc actgattagc cgcccgccca gccagtgtct aggataaatc       600
     tttggttggg gtcttggctg agaaaccgtt ttcgggtata ggtcatagga gtccaagatc       660
     attacattac gtttgtaatt cattccgttt tccccaagtg ctcactacta ccctaaaaag       720
     gcaaaaattt cggtaattgg gggtctcaat ataggccctc actaaaaaaa aaaaaaaaaa       780
     aaagtagtgt ttggtgtcat tggaaagcat ttttcaagcc ctttccagtg gtatgcttta       840
     tacgattgta agttaaaaac tgcaactttt cattaaaacg cttaacaata aatttttaca       900
     cctccgcgca caagcagata tcagcacaca cttgagggtt ggggtgagtt cgcacctcca       960
     cgcacaagca gacctgagcg cacacttgag ggtaggggtg agttctcagg tggactcatc      1020
     caagggatag caaagggtca cgtcttccag aaaaccaatg gagggaggat cttatagaat      1080
     acctgactca ggcgacacat acataccgag tatcagtgca tacaagtatt taaaatttta      1140
     aaatcaagtc agctaaatgt aaaactgatg tactataatc agcctatgtc ctatgttcta      1200
     gctactttca gcttaaggcc agaaattttt aattgcttca cgatcgaatg caagtgctga      1260
     caacgtggtt acaagtaaat atatatataa aggtaaaatg tttatttcat aacgattgtg      1320
     catgaccgtt tccgattcct tttaagtctt aaaaaaaata tttattgcaa ttgacggtgt      1380
     tctgaccgtt acttcccaca cacctgtatt tacattcgtg gaacccttgg gcatcgttct      1440
     tatcaagtga acatagaaag ggaaaatctt tcttacacgg agattgtgca cgaactatcc      1500
     cgctgtccgt agaaaccatt aaatggaata tttactacac ttgtcatttt cctgaccagt      1560
     cttccgcaca caccgatatt tactttcact gaactctcag gcctcattat catcatccgt      1620
     taatttgttc gccatccttg tcttccttat ccttcaatac catatgactg gcgtccgggg      1680
     ctcctatgta tactcaaaac caatacgatt ggttctagga gtaaaacata cctgtatgca      1740
     ctccctattg gtaacattag gtgaacatag tctagagact atataaatga caccactcaa      1800
     attgctcaga atcagttact caaaggcctc agaactacat taaaagtctc ggtgctttat      1860
     tgtgtttatc tttgtcattt tcgtcggtgc ttaaaaatta taaacaattt ttacaaatat      1920
     atatatatat atatatatac aaatacattw caaatattat aataacttaa aaactacatc      1980
     gtttaaatca aaaaaatgga gtcaacaatt gcatgtgatt tgtgtgctat gattgtgaag      2040
     atgtgtgagt ttagtgatca ctatgccaag tgttccaaac ctcggaatgc cttcgaggtt      2100
     ttaatggcaa gttctaaaat aagatgtgac ttgtgctacc gtatagtccc caactataaa      2160
     tttgacgagc actataagaa ttgtgaagga ccgcaaaatg cattcagcat tttaatgaag      2220
     aagaaggata ataaaggaaa acaacaggaa ccagctattg ttcgagacga tattccctca      2280
     acatcagcaa atgccctcaa gcggataaga atggatgagg gtaaggaacc aaatagtcct      2340
     acaaaaaagc ttaagatttc gggaaataca caagagcaaa aaagagaaat tttatgtcat      2400
     acttgtggta tccagtatct tgagtcaagg gaacgtcagc atatgctaac cgattaccat      2460
     aagaatgctt cggtccgaga agatgtaaat tataaaaata tttcacaaat tgtgagtaac      2520
     tctaagtttc ctgtaaaaac atatagaatt aaatgtccca acgaaaatgt aattgactta      2580
     aatgattttt atcaattttg tcaatcaaat ctacttaaaa taattgagga ttgcatgtca      2640
     gaatatagag caatcaaatt ctcgttaaga gtgtacggga cttatatgaa acaaatagat      2700
     gacggagaaa ccgttgaaac caggaaacac tttggaacgg cgtatagatc ggtatatcaa      2760
     gttgaaaata ttactgtaga attaaatgcc gcaatagaat ctctaataac atcgagcagt      2820
     gagttccagg aaaaggattc tggttgggct atcaagaact ttgattattt tgaagccact      2880
     atagttaaac tagaaaacat tcctgcaagc ggtttcatac cagctccgaa tagcataaga      2940
     tcgcgaaatg cgataataaa tattcaaaac acagacgtat tttgttttaa gtgggcaatt      3000
     ttagcatttc tagctaacaa gcgatttcag aatgctactt ttgcaacgcc acaacaaaag      3060
     aaatattcac gggagaaatt aacgaaaccc gcaaactacc acataaatat caatgcagaa      3120
     gtcattgttt atgaaggaat gagactggat ttttcaggaa ttgagtttcc aattaccaaa      3180
     aaaggaataa gtcagttcga gaaaaaaaaa gattttagca tcaatgtgta tgaaattgat      3240
     aatgacggta aaaaaattgt gggacccaca gttaaaactc aagagattct accaaaccac      3300
     gtaaatatat taggaattaa taaccgtcaa aatatgcact atgcctatat tacgtgcatc      3360
     aaaagattat gcggctcaca gcattcaaaa tcgcacgcag gaaaatattt ttgtgataac      3420
     tgcctgcagt tttatacaac aacgaacact acccacaata agcttgaatg tggaaaagtg      3480
     gcttcgtact atcctgaacc gaatacgacc acttctttca atggatatca taagaagcta      3540
     tcacctccag tagttatata tgcagacata gaggcggtcc ttgaaaacta tgagatctgc      3600
     ttaaataatc cggctacttc ggcaacaaca aaggtgcaaa aacattcagc gtgtgcggta      3660
     tccttctaca ttgcacacaa atatgatcca actctgaatg agttatggac atatgaaggt      3720
     aaattaaaaa aattaagtta ataaatttga aataatttaa attttataaa attacaggtg      3780
     aagattgcat taagcaattt tgtaaaactc tcaaagaaag gactttgagt ttattttaca      3840
     aatattgggc cacagcaaaa agtcccagta cagatccaat cgatgacttt gaccaagaag      3900
     gaagttgctg tgcctgtgaa aaggtaatca acgatggcga cctggacaaa cacttcgacc      3960
     aattttctgg gaaatacgta ggtcctattc ataagaactg taagcctaaa tataaattaa      4020
     gcgatccatt ttttcctgta gtttttcata atttatctaa gtatgatata catttattta      4080
     ttactgaatt ggaaggagat ttaaacccca ttccttgtaa taaagaattg tacatagctc      4140
     ttacacaaac tataaaacta aatgcattaa atagatataa aattaggtat atagattcag      4200
     tacggtttct aaattctagc ttggaaaaat tatcaagcta tatggaagat agggatttta      4260
     aaattctcgc aacaaaattt caaggagaaa aattcagaca aatgcgtagg aagggtgtat      4320
     ttccttatga ttacttgaat agctttgaaa agtttaacga aacccagctt cctagcattg      4380
     atagttttta taattctctt agcgatgaaa attgtagtgt tgaagattat agttttgcac      4440
     agaaagtttg ggacacattt aattgtaata ctataaggga ttacttaaag ctttacttag      4500
     aaagtgacgt tttaatttta gccgatgtct ttgaaaactt tcgaaatatt tgtcgtagaa      4560
     tttataagtt agacccaata aactatgtaa ctgctccctc aatatcatgg gacgcaatgt      4620
     taaagttcac caacgtacac ttagaattaa taagtgatgg tgatatgtat aactttttaa      4680
     aaagagctgt aagagggggc ttaactcaat gcagtcagag aatttccata gcaaataata      4740
     agtacttaaa taactttgat cctagcaaac gaaataattt cttaagttac attgacgcaa      4800
     ataatttata tggatgggct atgagtcagc ccttaccact ttcagggttt aaatttttaa      4860
     ctagggaaga aatcgcatta tttgactata aaaatatatt atctgatggt gatgtaggat      4920
     atatgttaga agttgacctg gaataccctc ctaatcaaca tgactctcat aattatttgc      4980
     ctttttgtcc tgaaaataaa gttcccccag gaggcaagca ggccaaactg atagcagact      5040
     taactaacaa aagtgggtac ataattcatt taaaacagct tcagctttgt ttacagcatg      5100
     gtttgatttt gcgaaaaatt cataggattt tgtcatttac acaatcatgc tggttaaaac      5160
     cctatattga tttaaatact aatcaaagaa aattagcacg aaatgacttc gaaaaaaatt      5220
     tttataagtt aatgaataat gccgtatacg gaaaaactat ggaaaatgtt gaaaagcgtc      5280
     gtaaagtagt tctagtaaaa cattatgagt ctagacaaaa ttctccaggc tttaggcaac      5340
     gtatagctag aaatgatttc catagcgttg agttatttgg aaccgattta gcggcaattg      5400
     aatcgacacc atcacaaata atgtatgata agccaatata cataggagta gcagttttag      5460
     aattatcaaa gtggcttatg tatgaatttt attacaactt tctattagtt aaaagtccat      5520
     ctacgaaaat aatatatatg gatacagact cctttatttt atcatcagag gatgatttct      5580
     atgagactat aaaagcaaat cccgatcgct ttgatacctc aaattataag ttagaaaata      5640
     aataccaaat aattcaggcc aataatagag aaccaggaga aatgaaggat gaacatgctg      5700
     gagatgttat gacttctttt gctggtctta aagctaaggc atattcttgt gtagttgcaa      5760
     aggataaaaa taaaacagaa tctgttcaaa aaattaaagg agttaaaaaa tctgttatta      5820
     aaaaactaag tcatactgat tatattgaat gtataaaata taaaaaaaac attttatgga      5880
     gcacagcgtg taattcgtag tagatcacat actttgtata cagaaattat gaacaaaata      5940
     agtcttaatt ataaggatga taagagatat attttaccag ataattgtaa tacattagct      6000
     catggtcatt ataaaattga acatattata aatagtgatc aagataataa tctattgtaa      6060
     agtatatmtg taaatatgta aatatatttt gtattattaa aattttattt taagaaaaat      6120
     atgtgaataa ataaatgttc aacaatatat ctaattgcgt tttattattt aagaatttta      6180
     tttacaggaa tccacgagtt gtgactagaa tcaaatccgc tccacttaac gaatacttga      6240
     ttattttttc tttgaagtat tttttctatc aggaatgcat tcttatcttt aactttttgt      6300
     agttcctgtt cataaaatga cccatcaata gagttgcctc tgtaatcttg aatctcatat      6360
     gttactggat atgtagactt aacttttata actttaaaaa cctccgttgt ccaattgggt      6420
     tcatatccct tcataaacgc tcccttatat ttacttattc gaacaaaatc atctacagaa      6480
     aatttatgtt ttggaaaaac tttagggaaa ttatacaccg ttttcaaaat gaactcctca      6540
     tttttaatgc aaacatcagc agggttcatt ttaatggttc ggtgatatga atgattgtac      6600
     tggtttacaa gatattttat gttatgaatc catttataat ttccttgcat actaaacatt      6660
     ttccacatgc gattttttaa tgttcgatta aaacgctcgc atatagaagc cttaagatgt      6720
     gtgaaagtgt gataatgatt tatattaaat gtgctcatta atgttttaaa tgttgaatta      6780
     aagaattctt ttccttgatc tgactgaata ttctttggtt tacttttgct cgctttaaag      6840
     acagttctca tcgcttctgt aacatccatg cggattttga cttcacagct tcagcgtatg      6900
     catactttga gaatgtgtca ataacagtca ataaatatct ataccctcta ttttctttcc      6960
     taaagggtat catttcaact aaatcaattt gccatgtatc attaatcccc ttctgaacaa      7020
     atttacgacg caaaaagttt ttgcgtgccg gtttgtgaat ttcatcaaca acttgttgtt      7080
     tactcatttt aagttgctga tttattttat tttgttttat tttttatttg atagtgatat      7140
     ttgcttagtt aatatggact gcttatatag aagtacatct ctttttaatt cgttacgcat      7200
     ctttttcgaa atttcaaaac ataatcgtgt taaatctatt tgtacatctt taccgaaaga      7260
     accctctaag tcagctaact gaatgtcata cttttgtaat gacacacact taggaataat      7320
     atgattatag taaagatata ccacttgttg tcgtaatatt gaattccaac ataagaaggt      7380
     tgtaaaaaat ataccaagtc ttagtaagga tctccaggac tcagagtcaa actcaatttt      7440
     gttaccatac tgattaatta caaaaacata ctggttatcc gatttcctaa atctaaaatt      7500
     acatttcata gatgacatgc aggggttatc aawaattgtg tcaggcatca agaagtcata      7560
     ctggtccagt ttcaactgaa tatattcctt atatgtgaga agttgcatcc attcgtcttt      7620
     atcaaatcca acaaaattac ttttactttg ctgcatccag atcataggca aaacattttt      7680
     tagaagtgga taaaccacat ttcaacttta aattatgtac aacatagtat tcgaatccaa      7740
     aaatgacctc atggtcctgt ttctttcgtg aagttttatt tcttttcggt acacacatgt      7800
     ctattaggtt agagcacttt attttaacta aaactttatt ctaatctgtc cggtatataa      7860
     aggaaaaggc cttcacatgt acaccctcag tccagttcaa aatttcaaac catcatgaac      7920
     actgtagatc gtaattcaag cgttattgtt gattttcaat atttatttgg aaacaacaaa      7980
     caagtttttg tcaaggagct tgcattcatg ccagcaggaa cggttatacc aaatttcttt      8040
     catttcaaac cgccattcaa cataaaagaa ttggataagg aaactcttaa gcagcaacat      8100
     ttaaatcaac aaaatataaa tggtttggaa tggtccgctg gagatatacc atatacagcc      8160
     ctagaagaaa ttctctcccc actcaataag tatagttcaa ttattgttcg tggtgaaatt      8220
     aaaaaaaatt ttatcaaagt atttgtcagc gaccataatc gatatagata tcggaagaag      8280
     cttaacccag ctacccaatt ttttcaccaa ttgtaaaata cataagacaa aatttcctct      8340
     acggtgttcc ctaaataatt tgtttaagct atttgtaata ttggaaaact caaattacga      8400
     agtatattgt aatactataa cgtatgttta agcttcagta ataaataaat agttgaacct      8460
     acaagttgtc ttatacaatg gagtcattca agggtttgtt tgataatgat ccgcgcaaaa      8520
     ggggatacac acaactgatt tattgtaatt attgtggatc tgatactcac ttcgagaaga      8580
     actgctctaa aaaacgcgat caggaaaaac ataaataaac ctaatgtagt ttaaggataa      8640
     gataaaaaat ctatttcaaa tataataaaa aataaaaata aataaaatgt ttacgcagtt      8700
     tatacatccc tttacaatgt tgatttgcgg accatcagga tcaggaaaaa caactttttt      8760
     ggaaaactta ataaacaaga agaatgattt gctaaatact tcaataaatc gaattatttg      8820
     gtgttatgga gaggagagtg ctaagccaaa ctttaataat gttgagtact ataaaggtgt      8880
     tcctgatgta attgaaaacg aaactaatga acccattctt ttaatattgg atgacttgat      8940
     gatgggggct tttaataaaa atgtatgtga gctctttaca aaaggatcac atcataggaa      9000
     tttatccgta atagttgtaa ctcaaaatat attccataag tcatcgcata cccgagacat      9060
     atcattaaac acaaaatata ttgtgatgtt taaaaaccct cgtgataaac tacaatttca      9120
     atgtttagca agacaaattt atcctgaaaa tccaactgag ttatttagaa tatataagga      9180
     agtaacggaa caaccacacg gatatttact tattgatctt actcaaggaa tcaacgatct      9240
     tttaagattt agaacggata tttttaattc cgaatatacc gtgtgctttt cagacgaaaa      9300
     tggtttacaa aaagaatcta aatcgcttga aagcgaacaa acatttattg tatgtgctca      9360
     aaaaggccaa caataaactt cgaaaggcaa ttataagtaa tagtgatagt gacctcgtaa      9420
     aaacattagt agagattgtt ttaaacacat tacaaggcaa tcataaagtt acaaaatcac      9480
     atctaaatgc tcttaaaaag tataaaaatg cattgcgata tctctcatgt ccaaagcgta      9540
     ccctaagctc caagagaaaa gttcttattc agaagggtgg tttcctacct attctaatta      9600
     gttcattgct ttccggaatt tttggaaaaa ttttaaaaga tgattaaaaa taaacataac      9660
     ttaagcaaag tagttctaat gcatcccaac gcataccaaa aactggtaaa caatgaccgg      9720
     ggtagtgaac taatagatat aaaatttgaa taacaataaa ataagtgatt atgacaaatg      9780
     gataaaatac ggcaagaatt atgctactac caaaacaaaa aacgtaataa atcatttaac      9840
     tttcgaaata ttgattcaaa atcaacccct atatctagca gaattaatga aactcaaata      9900
     ttagattggg atgatgcaaa accgaatact tcagaatcaa taataaaata tgaagaaaaa      9960
     ttaccaaaaa atgaagtcct tacaaattta acaactgata gtgatgaagg agaacttaag     10020
     accgaggaac ggacaaagtt gttaaacgat aagcgaaaat taagtgagac ttctttttta     10080
     gacgataaag aagatattaa aagaaaagca gtgacaaaag tgaagcttaa tgatcaacaa     10140
     cgtaaattaa gggtaaagct gaaaaaatat aaaatagatt caaatccatt tcaagatctt     10200
     aaatatgtgt ctggacgtga aaagttaata agatcggttc gtgctaaaaa ccaaatagga     10260
     aaaaacaaaa tcagttggat ttcttatcaa tagtgcttaa tttaaataat aaaaatgggg     10320
     aatttagatg aaatgtttat cacattgctc agtaatgatt cattgaatgt atttcctgat     10380
     aacgtaaagt gtgcatttac aaacattgta aatatcccac aagacatgaa cgatgattgg     10440
     gaagttggca ttatagacat gtatctcaat aattatatta atcaaacttc caataaagaa     10500
     attccaatac gtgaagaaac ggaatttgtt agcttagtaa atgctgaaac atttagatat     10560
     aaaaatgtaa gcgttgattc aaaaacacct gaaaatgggt tgatttttat ttatactgac     10620
     ataattaaac ctagatctgt aggctgtaaa aaacctcgtt gtcttcgagt aatgtattat     10680
     aatggaaaag aaaaaaatat tcaatttaaa aatattgaat attatccttt ggatatatgg     10740
     tcaccaaatg aaatctcaat actaattact gattcaaacg gatataaggt tccatttgaa     10800
     acgtcaacag ttccgatttt tgttactcta catttcagaa gaagaaggac gttgtaaagt     10860
     ctataaataa tacgggctta aaaattattt actcataata aaaacagtca tcatggtgaa     10920
     atcttatcac gaatattatt taaaccaatg tggtggcggt ttaagcaata ttggaagtct     10980
     ttatgtatca ccacgaatag ttcaacaagg acgaggaatc gggaactttt ttagtggtct     11040
     ttttaattat atcaaaccac tttttctttc gggtataact gctataaaaa gtcaggctgc     11100
     tgctactgga aaggctgtaa tcaatgaaat cgggagaaag cccttaagaa atatcctgca     11160
     agaacagagc aaaattgctt tgaaaaattt atcagataga gcaattgata aaataacccg     11220
     attccaaaac ggggaaggaa aaagaaataa aaagcgaggc accagaaaaa aacgacatca     11280
     tttaacatcc aagcaacagc gtaaacaaac caaaccgcat cataaacgaa aaagaactat     11340
     aagaaaatta aatattagcg acattttttc taagacaaaa tgagtaacca tatcgaatgc     11400
     atgaagagtg aactggattt gtttgcacca catcccacgc aaagttccat tataagaact     11460
     gaagaagttt catataaccc aattgcttct ttagacggag catcatcaat mgaatttgtc     11520
     tgtttaggaa atggtgaaac atatcgagac ctatcaagtg tttatttacg acttgttgtg     11580
     caacttagaa aaagtgatag caccggcatt gtaggaaacg atgtcggtgt agtgaacaat     11640
     atcttacact ctatatttag aagttcctca gtttatttaa ataatatatt agtatcgcag     11700
     agtgataata attatcatta tagatcgtat ttgcaaacag ttttaaacta tggaagtgat     11760
     gcctcagaaa gtcacttagc ctcccaagga tatttcccga attttggacg aataacggca     11820
     ggcgaatatg tttatccaga taccaatcta aagcttaaaa atttatttca aaatagtaat     11880
     aaggtggaac ttttcggaaa aatccacggc gatatattta atcaaccaaa actgctagta     11940
     aataatgttg atttaagaat taattttaat attgaaaaga ctgcatttta tttaatggaa     12000
     actggtactg agtcaaattt aaagatactg gaagctcaac ttttcatgaa tcatataaca     12060
     gttaacccaa gcattttatt ggctcaccat cgagttttac agaccaaaaa tgctatatac     12120
     cctttcaata aggttgaagt aaaatctttc acaatatacc caggaaataa tacattatct     12180
     atagacaatg cagttattgg acagctaccc aattttctag ccttttgtat ggttaaaaac     12240
     cgttcatact caggaaaccg tggtttagat ccatttcatt ttgaacattt taaaattcaa     12300
     cgatttaact tattggtgaa tggagttcaa gttccttctc aagctcttga gtttgattac     12360
     tcgaatggtg aaaatgttca gagctcacgg ggctataata tgctattcag atctagtggg     12420
     ataaaacatt atgatcgtgg tctgcaaatt acaaaggaaa tgtttgacac aaacagtttt     12480
     atattggctt ttgacctaac tgccgatcat tcaaattcga gtgtttgtgc gaatttaata     12540
     acccaaggaa ctatacgaat cgaaggaaga ttctcagaac cacttactga agcagttact     12600
     tgtctggtgt actgcgaata cgattccatg attgatattg ataagcatag aaacatacga     12660
     ttactccttt aacatgaata cattacaaat taaatatttg ctatcaaagc atgcaaaaac     12720
     acgattgatt tttaaaggag ttttcccttc ggaccagtta cctgaaacta taaaaaagta     12780
     tccggctctt attattgcga ataccgatcc atcagataaa cctggaactc attggattgc     12840
     cttctatttt gatagcccta agtcagctga atttttcgat tcatatggtc aatatccgca     12900
     gaaaaaggaa ttcataacat ttttaagatc aaacgcccat aaatattttt ttaataaaca     12960
     acaactacaa ggatattttt ctaacacctg tggtcattat tgtatgttgt tcggactttt     13020
     taaatgtaga aataaatcac ttaagtgctt cctgaaaaat ttcaagaaaa acgactttac     13080
     ttataatgat aaacaaatac ttaaaatgtt taagaaaaat ttcaaaaagt aaaataaaat     13140
     ttttttatta taagtttagt ttatttaatg tttctgagcg atacaatctc tggtttaact     13200
     tataatattt aagcataata ttaagggcct cgtcttctaa tatcggcagc atatgacact     13260
     gacatgtgtc tggtccagat gtagcatctt catcactcca aggacaaagt ttgtagtgga     13320
     atccaaactt tgaatgtatt aactcctttt ccgctaagtc ctcaagggtg gcttttaaat     13380
     attcaagcct cctgaggtgt tgctcgaata acatgtcttc aaactgcatc aagaagactt     13440
     caatttgttt agcgtgcatt tttgtaagac ttgtaacttg ttaaggttga actaagactg     13500
     attttggaat aagaaattca atcttttata aggggaattt cttatttact tcatttattt     13560
     acttcattta tttactgata aattcaattt gagcacagct atatctattt ggatcctttc     13620
     ctttatatac catatgagaa attccgttct cagtcaattt cttaaatggt gtcttagtag     13680
     aaaatttgtt tacataactt tttggtagaa atatccaaat atcctcattt tccttattgg     13740
     ctaaataaag gcatatttta gttccataag gtgttttcct taatttacat ccggtgatct     13800
     tataatcaaa cccaatacat agatcttcaa ttttcgtata accaataaca ggttttgatt     13860
     catttagggt ctctaagaaa tcctatgagg aataagtaga ttaggaagga ttatatacat     13920
     aaagaagtgt ttatatacca tttttgattg gttagagatt ggagtcgtgg tgttctagtc     13980
     actagtcgtt gaatactaat ttgttacatg aattacatgg tcttttatac atgaaagaat     14040
     atatctattt cactctttca tgtacacatt atatatatgt atatattata tacaggtgta     14100
     ccacaacaca gttaaagtat ataatataca atttttcatt taaaaccctt taaaatagat     14160
     gtattttttt aaaaaaaact cagttcagtt tcacatcaaa atgggcaagt ttcattgtga     14220
     gttatgctcg gaatcaaaat cttttactac gcgcaacagt ctaaaagttc ataccttaaa     14280
     agtacacaac tttagctata caaaatcaaa gtccttttat tactactgtt atttctgtac     14340
     tgatgttcgg aaattttggc tgcgagacga ttttaatatg cacatgatat tgatgcacga     14400
     tgctgaatta aaaagtataa ataaaacgaa agagaaatat ctaataaaga acaagaactt     14460
     taaatattga atttatataa cgtgttttta tttcataatg ttttaagaca aatatacaaa     14520
     tattaggaat ctaatcttaa gagaacatcc attaaaacac tatcctgtcc gtcatccata     14580
     agttgttgat attttgtctg cggttcattt tcaattatct cattaaaaat gtgatcatca     14640
     tttggaaaca ggctaggctc agactcatcc aaatcaaacg tttgagcaca ctgcatattc     14700
     ttatattgct cttcgctttg ttcaagcaga ataagttttc ttagaacttc ctgggtatcc     14760
     ttacccatag gaaagtcttc aaagcctaaa gaatccaatt ctgatggagt ggtttgagtt     14820
     gacgatgagg gtggttcaaa tacttctcgt aggtatcggt ccacggtgtc ttcatcgtcg     14880
     agatccaatg cgcagtccgg ctcagaatct tcaataattt ccacatcgga gtcctggtca     14940
     tcgatttcat ctgacccgat aactttaacg tttataccga aaggttggtt aacgagggtc     15000
     ttatcagcct caaaagaatt ataaaattca acagtaagat ccatagttat gtatttctga     15060
     ggcctttgag taactgattc tgagcaattt gagtggtgtc atttatatag tctctagact     15120
     atgttcacct aatgttacca atagggagtg catacaggta tgttttactc ctagaaccaa     15180
     tcgtattggt tttgagtata cataggagcc ccggacgcca gtcatatggt attgaaggat     15240
     aaggaagaca aggatggcga acaaattaac ggatgatgat aatgaggcct gagagttcag     15300
     tgaaagtaaa tatcggtgtg tgcggaagac tggtcaggaa aatgacaagt gtagtaaata     15360
     ttccatttaa tggtttctac ggacagcggg atagttcgtg cacaatctcc gtgtaagaaa     15420
     gattttccct ttctatgttc acttgataag aacgatgccc aagggttcca cgaatgtaaa     15480
     tacaggtgtg tgggaagtaa cggtcagaac accgtcaatt gcaataaata ttttttttaa     15540
     gacttaaaag gaatcggaaa cggtcatgca caatcgttat gaaataaaca ttttaccttt     15600
     atatatatat ttacttgtaa ccacgttgtc agcacttgca ttcgatcgtg aagcaattaa     15660
     aaatttctgg ccttaagctg aaagtagcta gaacatagga cataggctga ttatagtaca     15720
     tcagttttac atttagctga cttgatttta aaattttaaa tacttgtatg cactgatact     15780
     cggtatgtat gtgtcgcctg agtcaggtat tctataagat cctccctcca ttggttttct     15840
     ggaagacgtg accctttgct atcccttgga tgagtccacc tgagaactca cccctaccct     15900
     caagtgtgcg ctcaggtctg cttgtgcgtg gaggtgcgaa ctcaccccaa ccctcaagtg     15960
     tgtgctgata tctgcttgtg cgcggaggtg taaaaattta ttgttaagcg ttttaatgaa     16020
     aagttgcagt ttttaactta caatcgtata aagcatacca ctggaaaggg cttgaaaaat     16080
     gctttccaat gacaccaaac acttactttt tttttttttt ttgagggcct atattgagac     16140
     ccccaattac cgaaattttt gcctttttag ggtagtagtg agcacttggg gaaaacggaa     16200
     tgaattacaa acgtaatgta atgatcttgg actcctatga cctatacccg aaaacggttt     16260
     ctcagccaag accccaacca aagatttatc ctagacactg gctgggcggg cggctaatca     16320
     gtggagggcc atttcgccga gtgccatttt agccgagtgc caattcgccg atgccccaag     16380
     tgctcactac taccctaaaa aggcaaaaat ttcggtaatt gggggtctca atataggccc     16440
     tcaactaaaa aaaaaaaaaa agtgtgtttg gtgtcattgg aaagcatttt tcaagccctt     16500
     tccagtggta tgctttatac gattgtaagt taaaaactgc aacttttcat taaaacgctt     16560
     aacaataaat ttttacacct ccgcgcacaa gcagatatca gcacacactt gagggttggg     16620
     gtgagttcgc acctccacgc acaagcagac ctgagcgcac acttgagggt aggggtgagt     16680
     tctcaggtgg actcatccaa gggatagcaa agggtcacgt cttccagaaa accaatggag     16740
     ggaggatctt atagaatacc tgactcaggc gacacataca taccgagtat cagtgcatac     16800
     aagtatttaa aattttaaaa tcaagtcagc taaatgtaaa actgatgtac tataatcagc     16860
     ctatgtccta tgttctagct act                                             16883
//
ID   Polinton-2_DK repbase;    DNA;    INV; 6981 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version -1)
XX
DE   Polinton-type DNA transposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-6981
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila kikkawai.";
RL   Repbase Reports 12(7), 1176-1176 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1358..2116
FT                 /product="Polinton-2_DK_1p"
FT                 /translation="MNSTNNNNSNIISTSSTSTSNAGSIPPLAVTSGIYCK
FT                 YCKIYLPMGVQWKNHIRTEAHKVFATQHITGSVKQILDGFKGRILQYMFVN
FT                 EGPAVRNPIEFFDEAGVAFLPHLKKALTTHLCSKINFEFFGEYMLVKEHDT
FT                 RVEIKSFQTKMTFITSASNLPAYMNFHKEELEIKMGEFQERDSGWTLIRII
FT                 RMEMNMMKCDPMKGSAHFKLPEILQRKNAVINVNNNDEYFVLSGQFFRAFQ
FT                 QMISHSDAQYIG"
FT   CDS           3545..4792
FT                 /product="Polinton-2_DK_2p"
FT                 /note="DNA polymerase."
FT                 /translation="MSSSLETLANNLNDEDLNVLSXQYPNREDFXLLRRKG
FT                 VFPYEYLDSSQKLEDISLPPREKFYSNLTETECSEDDYAHACKVWSHFKCQ
FT                 SLKDYLELYLKTDVLLLTDIFQNFRGICLQVHELDPAHYFTIPSLSWDAML
FT                 KTTQITLELLTNIDMIRFIQCGIRGGLVQCSHRYTKANHKYLKDFDSTKES
FT                 EYLMYVDANNLYGWAMSEPLPYXKFKXLEVEEVEKFNVENISDDGEYGYIL
FT                 EVDLEYPYSLHDLHNDLPFCPANKLPTVNSKAKKLIADLXDKESYIIHIKT
FT                 LKQCMKNGLKLKKIHSILEFKQKPWXKIYIDINTEHRTRADTTFKKDFYKL
FT                 LNNSIYGXCLESXEKXXDVRLVTEWEAPPSGPQGGFPRLCARELISRPNFH
FT                 SATRFTDKLXAMYSAKEITKRL"
FT   CDS           4912..5598
FT                 /product="Polinton-2_DK_4p"
FT                 /translation="MKADDLYADIRNDIEYKFDTSEYSDELAKQYNFKQCN
FT                 KKRLGFFKDELNGRSMTEFVGLRSKMYAYKSESVGNQPEKCVKKNKGIKYS
FT                 SLRKITFDGYKTCLFTGQQEYDSMCMFRSRGHEISTIKITKITLDNKDDKR
FT                 IICDDRVSTLAIGHYSTVENRIRGEMAILEAQSQDLESQIQRQTDSSQSLI
FT                 RTERLKRKLKENESATINQMTHLIKHFASDYYAKKLKEC"
FT   CDS           6671..5826
FT                 /product="Polinton-2_DK_3p"
FT                 /note="integrase."
FT                 /translation="MKGIDDLFQVDLVEMGKYSSTNKGYRYLLTVVDAFSK
FT                 FAWGEAIKSKTGKDVTEAMEKVFKTGGRVPKNLQSDDGKEFFNSHFKALMK
FT                 RYKINHYSTFSTLKASIVERFNRTLKELMWKEFSFNGTYKWIDMYKELINN
FT                 YNNTTHRTIKMAPIDVNSENENHILKTVYNNIKMFTGSKLKIGDNVRISKY
FT                 KGVFEKSYTPNWSTEIFKIIKVQNTNPVTYLLEDLNSNPIKGGFYKEELKK
FT                 TSFPDEYLVEKVLKRKGNRALVRWLNFPKSADSWIEKSEIL"
XX
SQ   Sequence 6981 BP; 2445 A; 1214 C; 1287 G; 1973 T; 62 other;
     atcagtagtt gcgaatgcac agaagcgggc cagctttgat ctttaatcgt taattagggt        60
     cattaattaa atagataggg gtgatctgac ccctgtcacc ttaaaagggt agggtaataa       120
     aaattgatta gggtgtgatt gaatggattg aggacacgtg agaaacgtgt gcggaagcgg       180
     taccgccccg aagacgcacc gatacgggag cgagggagcg ataacgcaca cgatacggct       240
     tcgagtgcgt atgcgaggga gcgatatcgt tcgacccgcg cgcgagcggg agcgttaccg       300
     ccccgaagac gcactcgaag cggtttcgag agggagcgat atcgttcgat ccgcgcgcga       360
     gcggggcgtt accgccccga aggcgcactc gaaacggctt cgagcgcgta tgcgagggag       420
     cgatatcgct cgacccgcgc gcgttggagg gtgaaaaggt cacataccac agtgcagtcc       480
     cgctgttaaa gaaattgaaa ggacgaacga gtgcgatcct taaagggatg aagatgtcag       540
     caaaagccgg tgtacacctg cgaagcacaa tgcaattaag agggatgaaa aggtcacagt       600
     cacccgagat ctttaggagt gatagagaac ttgtgtgtgc tacccttcca ccaaaggaca       660
     gtcactgaag aagcaaacga aaaagggatg gagggtgaaa aggtcataaa ctgcattcat       720
     cckttcmatt ctccctatca ttcgcaacgt gctgtgatat gcatgaaggc tcatgtcttc       780
     atcttagaag agccgacttt cgcataaggg tggggcggta tgggaaaakg ttcagtttsa       840
     atccatttct ctgataaaaa agtctgaaca tcgaaaaagg aaagtaactc ctccatccat       900
     tctaactcct gcaatggtat ggggcgccac acaagaaaaa ggatcttttt tctattcaat       960
     cgtgacgaat gcaaaactgg atcaaaatgt tgcaaaccca ggtgaatgag accatagagc      1020
     cttaacgcag agttctagag tttcactttt agtttgcgtt ccaagcgact tcatcacgcc      1080
     ggtcttccct tcaacttgaa gaaaatcaaa agtgctagtg aaaattgaag aaaaatcaaa      1140
     tttaaacatt ttaaccaaaa aaaaaaaata aaaacattta aaatcaaaag caaaaacttt      1200
     tagtttacat tccaagtgat ttcaacacgc cggtcttccc ttcgtcttaa agaaaagaca      1260
     aaagtgcaaa aacaaataaa caaaacaaaa taaaaaacat taaaaaaata aataaattta      1320
     ttttatttca acaaacaaaa tcaaaattaa catcaagatg aattcgacaa acaacaacaa      1380
     cagcaacatc atcagcacca gctccacctc cactagtaat gctggttcca ttccccctct      1440
     tgcggtaacc agtggaattt actgcaaata ttgcaaaata tatttgccga tgggagtgca      1500
     atggaaaaat catatccgca ctgaagccca taaagtcttc gccacacaac atataactgg      1560
     aagtgtgaag cagattttgg atggattcaa gggacgaatt ctgcaataca tgtttgtcaa      1620
     tgaggggcct gcagtcagga atcccattga attcttcgat gaagcgggtg tagcatttct      1680
     tccccattta aaaaaagcgc tgaccaccca cctttgctcc aaaattaatt ttgagttctt      1740
     tggagagtat atgttagtaa aggagcatga tactcgtgtt gagataaagt cattccaaac      1800
     taaaatgaca tttattactt cagcatcaaa tttaccagcc tacatgaatt ttcataaaga      1860
     ggaactggaa ataaaaatgg gagaattcca agaaagggac agtggttgga ccctaattcg      1920
     catcatcaga atggaaatga atatgatgaa atgtgatcca atgaaaggat cagctcattt      1980
     caagctccct gaaatactac aacgcaaaaa cgccgtaata aatgtgaata acaatgatga      2040
     atattttgtt ttaagtgggc aattctttcg agcttttcaa caaatgataa gccacagcga      2100
     tgctcaatat atagggtgaa catttcatca gatgtaatat acgctgaagg aggtgtaaaa      2160
     ctagatttta ctggattaaa tttcccagtg gtgstggacg atgtgaagga gttcactgca      2220
     caaaatccwc acataagcat maatgtgctt ggatgkgmta ccgacataaa taaagtattg      2280
     gaccacttta ttcagatgga ktggaaaaaa ataagcacat aaakttgatg tttgtaaaak      2340
     gascaacggc caacgttccc ggacatttcg tctacataaa aaatatgtca cggtaagtaa      2400
     caataaagtt agaaaataaa taaataataa aaaaaataaa twgwtcggct gggggkaaac      2460
     ttmtmamttc cgaaagcaca cactattaaa acactcccgc gccgcagtcg taaaacacca      2520
     aagaaaaatc accwccaags agamkastmk cagsccsggg gggcgcggct attttcwgca      2580
     wcaaaggagt ggacttggtc cgctttattg ggcttcatam aasgaattaa aatacaagcg      2640
     ggagckggag atcaaaacta sgagagcggg agcggccgct cagcgatgcg acgatcgkcc      2700
     agagccgaag catccgctag aagagcggga gcgcaaactg agagcgagag cgcgagctga      2760
     gggggggggg ggggaacata agctccwgac ctgaacataa ataaataaat aaataaataa      2820
     ataaataaat aaataaaatt ataaatattg taatataatt aatatkctaa ttaaagtcaa      2880
     aaaattactt ttccagacwa ctctcagccc aaatgggtaa gcatcaggag gcgcgactct      2940
     tstgcaacaa gtktttggtt actcaacgaa taatatgtat actggaaccg atgtcagtag      3000
     cagtaagtga gaaaacaaag ttaattaata ggcatgttcc aatatcattt gcatactaca      3060
     taaagtgtgt atataattct aatttagata agttagtttt aaaaacaggt ggaaatgtta      3120
     gtcgcacttt cattgaaaat ttaacgtccg atttgtccga gatatatcaa aatcatatgt      3180
     caaaaataat tccacttcaa atgtctcaam aggacaatct amactttaat gcagctctta      3240
     attgtcatat ttgtaaggga aaattaggga atgacagagt ggagatcact gtcattttac      3300
     aggcagattt cgaggtgcag ctcataatga ttgcaatctc aaatttaaaa caggtaattt      3360
     tattcccgtt ttcttccaca acttttccaa atatgacgcc catttatttg tgaaagatct      3420
     cggtgaaaca gaaggagaaa ttcgtgtaat tcctacgaac awggaattat atatagccat      3480
     ttcaaaatat gtcccagtag gaaaaaatac attggaaatt agattcttag actcattcag      3540
     attcatgtcc tctagtctag aaactcttgc gaataattta aatgatgaag atttaaatgt      3600
     tttaagccaw caatatccaa atagagaaga tttcwccctt cttcgtagga aaggtgtttt      3660
     cccatacgaa tatttagatt cgtctcaaaa acttgaagat atttctcttc cgccaaggga      3720
     aaagttttat agcaatttga cagagacaga atgttctgag gatgattacg cacacgcatg      3780
     taaagtatgg agtcatttca agtgtcaatc acttaaagac tacttagaat tatatttaaa      3840
     aactgatgtt ttgttgttga ccgacatttt tcaaaatttt agaggaattt gtttacaagt      3900
     tcatgagctt gatcctgctc attattttac aatcccgagt ttgtcttggg atgctatgct      3960
     gaaaactaca caaattaccc tcgaattact cacgaatatc gacatgattc gatttataca      4020
     gtgtgggatt cgagggggct tagtacaatg tagtcatagg tataccaagg caaaccataa      4080
     ataccttaaa gattttgatt ctactaagga gtcwgaatac ctaatgtatg tggatgcaaa      4140
     taatttgtat ggttgggcca tgtctgagcc cctaccttat gsaaagttta agtkgttaga      4200
     agtagaagaa gtagaaaaat ttaatgtaga aaatattagt gatgacggcg agtatggata      4260
     tatattagag gttgacttag aatatccata ctcgcttcac gatttacata atgatctccc      4320
     tttctgtcca gccaacaagc tccccacagt aaattcaaaa gcaaaaaagt taatagcaga      4380
     tctccawgac aaggagagtt atattattca tatcaaaacc ctaaagcagt gtatgaagaa      4440
     tggattgaag cttaaaaaga ttcactctat ccttgaattt aaacagaagc cctggwtaaa      4500
     aatttatatt gatataaata ctgagcatag aaccagggca gacactacct ttaaaaaaga      4560
     cttttacaag ctcctaaata attcaattta tggaawatgc cttgagtcaa stgaaaagma      4620
     wgwagatgta cgtttagtca ctgaatggga agctccaccc agtggtccac aaggcggatt      4680
     tccacggcta tgcgccaggg agttaataag tcgacccaat ttccatagcg caacaaggtt      4740
     tactgacaaa ctgwatgcta tgtattcagc taaagaaatt acgaaacgtt tgtgataaac      4800
     cactttactt aggtttcgta attttagaat tatcaaatta tcgtatatga aaccaaaatt      4860
     tgaaaataaa ttaaaactta attatatgga taccgattca ttcgtttact catgaaagct      4920
     gatgatttat atgctgacat cagaaatgat atcgagtata aatttgatac atccgagtat      4980
     tcagatgaac tggctaagca atataatttt aaacaatgta ataaaaagcg cttaggtttc      5040
     tttaaggatg aattgaatgg taggtcaatg acagagtttg taggcttgag gtcaaagatg      5100
     tatgcctata aatcagaaag tgtcggtaat cagcctgaaa agtgtgtgaa aaagaacaag      5160
     ggtataaaat atagcagcct aagaaaaata acatttgatg gatataaaac atgtttattt      5220
     actggtcagc aagaatatga ttctatgtgt atgtttagat ctagaggaca tgaaataagc      5280
     acgataaaaa taacgaaaat aacattagac aataaagatg acaagcgaat tatttgtgat      5340
     gatagagttt caactttagc aataggacac tattcaacag tggaaaatag aattaggggt      5400
     gaaatggcga ttttagaagc tcagtcacag gatttggagt ctcaaattca gagacaaact      5460
     gatagctctc aaagtcttat tcgtacagaa agactaaaaa ggaagttgaa ggaaaatgaa      5520
     agtgcgacta tcaaccaaat gacacattta ataaagcatt tcgcttccga ttattatgct      5580
     aagaaattaa aagaatgtta agaaacacaa aaaaaaaaaa aaaaaaaaat tgtaaaatat      5640
     attaataaat aaatacaact attaatttaa gtttgaaaca atatacttta tttaaaaatg      5700
     tttaaatata agatattaaa ataaatctaa tgtatataat actacgcaca taattataat      5760
     caatacaaaa caaaaaacaa ttataataaa aataaaataa aaatatttct ccatgtgttt      5820
     tattataata tttcagattt ttcaatccaa ctatcagcac tttttggaaa attgagccag      5880
     cggacaagag ctctgttacc ctttcttttc aagacttttt caactaggta ttcatctggg      5940
     aaactagttt ttttcagttc ttctttataa aaaccaccct taattggatt agaatttaaa      6000
     tcctccagta agtatgtcac aggattagta ttttgtactt taataatttt aaagatttca      6060
     gtgctccaat ttggmgtata ggatttttca aaaactcctt tatatttaga aattcgaaca      6120
     ttatcaccaa ttttcagttt gctacctgta aacattttta tgttattgta tacagttttt      6180
     aaaatatgat tctcattctc gctgtttaca tctatgggag ccatttttat tgttctatgt      6240
     gttgtattat tataattatt tattaactct ttgtacatgt caatccactt atatgtccca      6300
     ttgaaagaaa actctttcca catgagttct tttaatgttc tattaaaacg ttcaacaatt      6360
     gaagccttta gtgtactaaa agttgaataa tgattaattt tatatcgttt cattaatgct      6420
     ttaaagtgtg agttaaagaa ctctttccca tcatccgatt gaagattctt aggtactctt      6480
     ccmccagttt taaatacttt ttccatggcc tcagttacat ctttaccagt ttttgattta      6540
     attgcttcac cccatgcaaa ttttgagaat gcatctacaa cagtaagaag gtagcgatac      6600
     cctttattag tggatgaata cttccccatc tcgactaagt caacttgaaa taaatcatca      6660
     atccccttca taataaccct acgacgtaaa aatttttacg tgatggagcg tgtaattcag      6720
     taataatacc ccgcctactc attttcacac aagttactta gaatatcctt ttttttcaat      6780
     aatacttgaa ataataacct caagtctgtc taaacgatcc tcaatatcgg tggccctcac      6840
     atcaggaata ctaataatta actcctcttg atgtgacatt agcgatgctc ttatatcgtt      6900
     catagcttta tcaacatact cmttgataac tatgtcacca ttctcwkttg gaaagcctcc      6960
     attktttata cgtctgcgtt g                                                6981
//
ID   Polinton-2_DSuz repbase;    DNA;    INV; 14159 BP.
XX
AC   .
XX
DT   09-JUN-2021 (Rel. 27.01, Created)
DT   09-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-14159
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 106-106 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 6-bp TSDs.
XX
SQ   Sequence 14159 BP; 4828 A; 2252 C; 2283 G; 4793 T; 3 other;
     agtagtaggg aaagacgggt tctgggacaa ttagcatatt aatggccccc gcccccttac        60
     taattagcat attaatgacc cccgcctctc actaattaac atattaatga cccccgcctc       120
     ttcattaatg tatgcgggtt ctgggacaat taacataatc cataaattat ctgattttaa       180
     ggggtttaga tgtcataaaa atgtcacgat catatccata aagagtatac taaattgcca       240
     cccccccaac cccacaccac catgtgacaa tactgatcac gtgacctttt tgcctcatta       300
     tcagcaatta atattcagca ggtgttgctg tacacgggag aaaggtcgca cactttcccc       360
     acatctccat gtgacaatat tgatcacgta tccttttcct cattatcagc aattaatatt       420
     cagcaggtgt tgctgtgcac gtgagaaagg tcgcaaaccc aaaacatcta aagctggttg       480
     ccttagaggg acatgtccga tcatgttggg gaataacgtt tcctatgatt gtaaaactaa       540
     tttagaaatc aaaagaaccc caaataaaat aaatcccaca agttaatgat tctcagatgt       600
     cgaatatttt caaacagact tttttttcgc cccagaatgt ttaactggta aattttttca       660
     agatctctcc tttctacaaa cgggtcataa acatatcata aaagggattc aagcaagagc       720
     tacccgaaca tgcgcacctg tctattacct gaccggaata aaagggacac atgcacaagt       780
     ctgaaggcgc acgcccattg acaaaatcat gagcctcacg ccaacgacct cacggctaag       840
     tgcgagctct aatacgttcc cataataggg gttgaagtca cgaccgcgca acaactcgca       900
     agtagccgac atatctcagt caaggaaata ttttccattc tccgtacctg taattttaac       960
     tcgaaataaa atgtcagaag tttattttgt accataaaaa tacatttatt catttacatt      1020
     tatttatttt ggtattgcga acattttttt ttatatatag aaatttattt tctgctatga      1080
     ttccggcgat ttgcatagaa gaagcaggcg cacgtttccg acgtcatttc tggattacaa      1140
     aatgtaaagt gttcaccata attcgtagtt ttgaggtcat gtccacctcg attcatgaac      1200
     atagtttttg tgtttagaag gtattgaaaa tgctgaccaa ttatctctcc tttaaattgt      1260
     tcaataaatt ggtcaatttc ctcatgaaac ttaatttggt taattttgtt ttcttgcaca      1320
     tccttacaca tctagtctca actttaaaat aatgtataaa aattatttta ttgttttgaa      1380
     gctactttta aaaaatgtca aaataatgta tgcattgttt agagcacaaa ccccgccctt      1440
     aaggtgtgtt tcacaatagg gaaaccggtt tcctttaaac ctgtttaatg acggacagcc      1500
     catttcctcg acattaatga gctgacgact cccaaaaaac gtctgtagaa atcgtttctt      1560
     ttccacacct ttacaaataa tttgttttcc gcttgtaatt gtccttagat actttcgagt      1620
     ttgtggaaaa ctattttctc catcgttcca aaaaattttg tgatgtgtat tggttaacca      1680
     aattgcagtc tttcgagatt ttgtatttag caaagtaaaa tcatatggtg gttctattaa      1740
     aaaactatta ttcaagtttg gatctttttc gaatacaatt ccaatttcct ttagaataaa      1800
     attattatta ttatcaaaga aaccttgaac atcaatcgaa acagtatctt tcaacatttt      1860
     tctaatgtta aacaactcgt tgtactagtc cgtttagtgg gttatattca actaaacggt      1920
     cttgtatgag gagacaataa tcttgggtat tttcatgact tggtgtcttt agttctattg      1980
     aaattctcac atcaatagga ccaattttac tgattcattt tgatatgaaa gataaaccac      2040
     aataataggg gtcttcaatt taaattcatt tggggtcaaa aatggttgtg attcacgatt      2100
     aactagattg aaatcttgta tacatttcat ataggtgagc atactaattc ttactaaaat      2160
     caacattcag attatcacat ggatatgact cagaattcaa gtgaactttc aagtttgata      2220
     agttatttgt gataagttct ccatttagtg taaatccaat tatggcaaat cttggttttt      2280
     tgcggttagc cgacaatttc acattccagc tgtgttgact tccatacccc aatttggcgt      2340
     taacatgtga atcccaactc cggaatgcga ttggtaggtt tacaccactt ttaataatat      2400
     cgtacatctt aattttttgc aaaatcgctc agagttacat gtggaatttt ccagatttta      2460
     ttcgtaattt ccaacttaaa agtttgttca tttctggttt gctcaaacac atcaccaaga      2520
     gtcttagtta gcatcaacac tagttcatgc ttacaattta acaaaacttt tttataatcc      2580
     tcagtcaatc ccaacaaatt ttttaatggt acagaaaaat tttaattggg gatcccgtag      2640
     aaatttcgtc tccactgctc catccagaat ttaataggta ttgactttga agattatcca      2700
     gagatataca attttttagg gtagtagcca taccgacata gacttgacac gttggactcg      2760
     ttgtatttag ttgttaccta gcagtatttt gatggttact ttctttttag tcttgctttt      2820
     ggatggttac tttttgtata gtacctgtac agtacttgat tttggatggt tactatctgt      2880
     atagtatctg taaagtactt ggttttagat gataactaaa tgttaacaag tattatgagt      2940
     cgctatagtc tcttattaag aactatcaaa gtacacaagt taaagtttct aagatgtgtt      3000
     agccaaacac acttgcagtg aactatcatt acctgaccgt catcaaagtc acatgcccaa      3060
     gacccaagga cattgaataa aatacttccc cttcatttgt acctggagtt ttaattacag      3120
     tcagatacaa aatttgtagg attattcaat atttctttat atattttatt attgtaaaca      3180
     tatttcatta aattcataat taattatatt ttatgtatat ttgtatataa ttaattttct      3240
     tacttcagcc ctctgtaaga aacatgtcgc ttattaatct tcgttccaag cgtagatttt      3300
     cgcttggttc ccatagatag atgtaaaata gttctcacaa tgtaatcttt ctcagatgct      3360
     gaattatttt taaagcattc atttgttcca tcccataata atattgtaac atatttcgaa      3420
     ggcatcatta gctagcatag gagcgcctat caatttaatt tttgattgaa gtttatgata      3480
     gaggtgttgg gacctggtaa tatcggtttt tgttgtcaac tatttttcta gttctagttt      3540
     tctaattcta ttctatttgt atactatttg tatgagtaag gcatcattgt ctaagattct      3600
     gaataagttt aataaactct ttaattacaa tactgattag ctggttacta tatatttagt      3660
     agatgtatac aagttgttta gtatctggtt tgatatgttt aatagatgta tacaagttgt      3720
     ttactagatg tatacaagtt gtttactagc tgtttagtat ctggctacta tatatttagt      3780
     agatgtatac aagttgttta gtatctggtt actatatatt tagtagatgt atacaagttg      3840
     tttagtatct ggtttctata tgtttaatag atgtatacaa gttgtttact agatgtatac      3900
     aagttgttta ctagctattt agtatctggt tactatatat ttagtagatg tatacaagtt      3960
     gtttagttct ggttacaata tatttagtag atgtatgcaa gttgtttagt atctatgttt      4020
     agtagatgta tataagttgt ttactagatg tatacaagtt gtttactagc tgtttagtat      4080
     ctggtttcta tatgattagt agatgtatac aaggtgttta atagatgtat acaagttgct      4140
     tactagctgt ttagtaactg gtttatatat ctttaatatc tgtttacttg atgtttacta      4200
     tttattagct ggttactagt tgttattaac gtctacgagc ttttatagtc ttttgttaag      4260
     aatgatcaaa aattcttgat cactagacga ctttcgatgt gaagtaaaaa cttacactct      4320
     gattttcagt gtgtttgcta tgtacgtaag aaagaatgca aagccaaaat agctcaagat      4380
     tgatatataa atcttagagg aacatgtccg attatgttgg gggaagatgt atcctgtgat      4440
     tgtaaaacta attaagatat aaattgttca caagttgtct aaaagctgtg tagaagctgc      4500
     tttgataaac aattttgatt cataattaca gatattaaga atatataata atatcatcca      4560
     ctttaactag tatattgtta aaataaaaca tttccatttt tcatattctt tcatcttatg      4620
     taggtataat aaatgtaatc ttaactacga tagctagcct tacatcccat aactatagtt      4680
     attagctaca ataaaatgtc tagaaagaac aaaatatatg aatgtccaaa aaccatttaa      4740
     aactaactat aattgggaaa gtaattgaaa tcgctccggc gtaatacagt aaaaaacaaa      4800
     aaacactgtg attatcccat tttctatcac cataacaaat gtgtataccc acacctaaat      4860
     gaccaattat atcctttgtc caaaaatgtc tgtgactttc acttataaat ttgtcaccga      4920
     taatttaaat cccattaagc aaaccaccca ttgctaaccg taccataacc ccagagtcaa      4980
     gttggttacc tacaataaac ataggtggtg gtgtaaagga ttgctaaaat gcctcgacgc      5040
     aggcgcaaat gtcataaaaa atgatcataa aaatataatt aggaaagtat tttttatttg      5100
     cgaaccattt ataactgtta ccaacaacac aaatagttat gttacaaagg atttgcttca      5160
     atgcctcgac gcaggcgcaa aggtcaaggt attggaaaaa aattcatgga atattatccc      5220
     ttcataaaag aggtcatata atatataatt aggaaagtat tttttatttg cgaacaattt      5280
     ataaatgtta ccaacaacac aaatagttgt tacaaaggat tggtaaaata ccttgatgca      5340
     ggcgcaaagg tcaaggtatt ggaaaaaaat tcatggaata ttatcccttc ataaaagagg      5400
     tcataaaata tataattagg aaagtatttt ttatttgcga acaatttata aatgttacca      5460
     acaacacaaa tagttgttac aaaggattgc taaaatacct tgatgcaggc gcaaaggtca      5520
     aggtaatgga aaaattcatg gaatattatc ccttgaccaa aaacgaaagt ttcttctatt      5580
     tggataataa aaaaatatat attaattcaa tactttgatt tttccatcaa aatgcttgat      5640
     aaatctagtt gtttgatatt ctctaactaa ttgagtaata tgttttcatg tgcctattta      5700
     atttaccaaa aacagtatta gtcttctctc ataaaattct ttggatccct ctaattcccc      5760
     accggtgaaa tatatgttcc tcatatttaa taatgatggt ttgtcataga tgggtacttg      5820
     taattcatat ttaagatact tacatccttc tctaactaat atccttttat ccatcatgta      5880
     aacaggttta gaattgtatt gcgtgcttca acccctagcc acacccacca ctgtaacaga      5940
     tttcactttt ccaatggctg ccccagctac ctaaactgta catttctttt gattttctct      6000
     tttcctttct aagcaatgta cacaattttt aaactggttc tgacctccct ctttaatggc      6060
     atcctctact ttattttcgt tatatttctg atcttttcct aacagtaggt tgttaaactt      6120
     ttattatttt atgggattat tgagcacccg aaatccctga tattaagtca taacatgtaa      6180
     ctagcagaat atagtaaaag acatcagact ctaaaaagac tagatttacc tacaattcaa      6240
     tttaccatct acaatccctg gagaagagct tagtatttgc agtttaattt tcaaatttat      6300
     tgatttcaca gattcccgct ggtaaatacc aatttttaac aaatggctgc caactccata      6360
     ccattcagac actggtttac aacctcatag aactgactct caaggtatct gtaatgcaca      6420
     atatatttct gtctcttttc ttctaatcaa tattaaaaaa tttcataaac tggttttgga      6480
     gttcatttta ttcttagaat taaattatta aaaattatta agccaacaga gataataatg      6540
     attttgtgat agtatcccgt cagtaataat acataattct tatttgtata ttttcaaatt      6600
     tttttatttt agaaaattat tcattaatca cattcaaata atattcataa tatatcttac      6660
     aattttttaa atttatcaat aawgtttccc aattattaat attaaatgat attgcatcat      6720
     atctattttt aagattaaat attaagaata aaaattctkt tccactcctc ctacttaatg      6780
     atgaccatta taaaattata attatcaaca actattatat taaatacaat taaatgtacg      6840
     cgtactcata taacaacagt tcccaatatc gatatatgat ggcctacaat cttactttgc      6900
     ctttgatttc cggtttctta tgtattcttc ttctcacttt gacacagtat ggaatggttt      6960
     tacttaagcc aatcgcatgg gatggtggtt tgattcttgg ggagggggtt tgatccttgg      7020
     atataaagta cctgctcgat tctacgttct gtcttttcct ggttgatgag attacaaaac      7080
     ctaaaacagt acaaaatttg aatcgaaaga cataagatga ctgaaatcaa caagcaaatc      7140
     aaccactgtg attttaaaat aaatgaagat ttgttggttg agataggaat cttcaaggaa      7200
     attttaaagg tttccaaaga gtcgcggcga gaattcggta gtatctatta tgatactata      7260
     gaagagttgg acatcctgaa atggcgcttg gtggatttgc agagcgaaaa caataacgat      7320
     tcccatctct ttgatattga gaacgtggaa aatcgaatca ccgagctgat gatggagaca      7380
     accaagtttc aacagcaaat tgatcttcac gatgcggaaa tcgaaaataa tccgctgtca      7440
     cgactgctcc tggaagttaa ggagatgatt tttcgtataa gggattcaat atcagactta      7500
     gagtatctta aatttaatgg tgaggcagas caatgtgagt tggtcagcgc tatgtctcgc      7560
     gaggacgacc ccatcttaat atttaatctt aaaaatagat atgatgcaat atcatttaat      7620
     attaataatt gggaaacttt attgataaat ttaaaaaatt gtaagatata ttatgaatat      7680
     tatttgaatg tgattaatga ataattttct aaaataaaaa aatttgaaaa tatacaaata      7740
     agaattatgt attattaacg ggatactatc acaaaaacat tattatctct gttggcttaa      7800
     taatttttaa taatttaatt ctaagaataa aatgaactcc aaaaccagtt tatgaaattt      7860
     tttaatattg attagaagaa aagagacaga aatatattgt gcattacaga taccttgaga      7920
     gtcagttcta tgaggttgta aaccagtgtc tgaatggtat ggagttggca gccatttgtt      7980
     aaaaattggt atttaccagc gggaatctgt gaaatcaata aatttgaaaa ttaaactgca      8040
     aatactaagc tcttctccag ggattgtaga tggtaaattg aattgtaggt aaatctagtc      8100
     tttttagagt ctgatgtctt ttactatatt ctgctagtta catgttatga cttaatatca      8160
     gggatttcgg gtgctcaata atcccataaa ataataaaag tttaacaacc tactgttagg      8220
     aaaagatcag aaatataacg aaaataaagt agaggatgcc attaaagagg gaggtcagaa      8280
     ccagtttaaa aattgtgtac attgcttaga aaggaaaaga gaaaatcaaa agaaatgtac      8340
     agtttaggta gctggggcag ccattggaaa agtgaaatct gttacagtgg tgggtgtggc      8400
     taggggttga agcacgcaat acaattctaa acctgtttac atgatggata aaaggatatt      8460
     agttagagaa ggatgtaagt atcttaaata tgaattacaa gtacccatct atgacaaacc      8520
     atcattatta aatatgagga acatatattt caccggtggg gaattagagg gatccaaaag      8580
     atcaatttta tgagagaaga ctaatactgt ttttggtaaa ttaaataggc acatgaaaac      8640
     atattactca attagttaga gaatatcaaa caactagatt tatcaagcat tttgatggaa      8700
     aaatcaaagt attgaattaa tatatatttt ttttattatc caaatagaag aaactttcgt      8760
     ttttggtcaa gggataatat tccatgaatt tttccattac cttgaccttt gcgcctgcat      8820
     caaggtattt tagcaatcct ttgtaacaac tatttgtgtt gttggtaaca tttataaatt      8880
     gttcgcaaat aaaaaatact ttcctaatta tatattttat gacctctttt atgaagggat      8940
     aatattccat gaattttttt ccaatacctt gacctttgcg cctgcgtcga ggcattgaag      9000
     caaatccttt gtaacataac tatttgtgtt gttggtaaca gttataaatg gttcgcaaat      9060
     aaaaaatact ttcctaatta tatttttatg atcatttttt atgacatttg cgcctgcgtc      9120
     gaggcatttt agcaatcctt tacaccacca cctatgttta ttgtaggtaa ccaacttgac      9180
     tctggggtta tggtacggtt agcaatgggt ggtttgctta atgggattta aattatcggt      9240
     gacaaattta taagtgaaag tcacagacat ttttggacaa aggatataat tggtcattta      9300
     ggtgtgggta tacacatttg ttatggtgat agaaaatggg ataatcacag tgttttttgt      9360
     tttttactgt attacgccgg agcgatttca attactttcc caattatagt tagttttaaa      9420
     tggtttttgg acattcatat attttgttct ttctagacat tttattgtag ctaataacta      9480
     tagttatggg atgtaaggct agctatcgta gttaagatta catttattat acctacataa      9540
     gatgaaagaa tatgaaaaat ggaaatgttt tattttaaca atatactagt taaagtggat      9600
     gatattatta tatattctta atatctgtaa ttatgaatca aaattgttta tcaaagcagc      9660
     ttctacacag cttttagaca acttgtgaac aatttatatc ttaattagtt ttacaatcac      9720
     aggatacatc ttcccccaac ataatcggac atgttcctct aagatttata tatcaatctt      9780
     gagctatttt ggctttgcat tctttcttac gtacatagca aacacactga aaatcagagt      9840
     gtaagttttt acttcacatc gaaagtcgtc tagtgatcaa gaatttttga tcattcttaa      9900
     caaaagacta taaaagctcg tagacgttaa taacaactag taaccagcta ataataaata      9960
     gtaaacatca agtaaacaga tattaaagat atataaacca gttactaaac agctagtaag     10020
     caacttgtat acatctatta aacaacttgt atacatctac taatcatata gaaaccagat     10080
     actaaacagc tagtaaacaa cttgtataca tctagtaaac aacttatata catctactaa     10140
     acatagatac taaacaactt gcatacatct actaaatata ttgtaaccag aactaaacaa     10200
     cttgtataca tctactaaat atatagtaac cagatactaa atagctagta aacaacttgt     10260
     atacatctag taaacaactt gtatacatct attaaacata tagaaaccag atactaaaca     10320
     acttgtatac atctactaaa tatatagtaa ccagatacta aacaacttgt atacatctac     10380
     taaatatata gtagccagat actaaacagc tagtaaacaa cttgtataca tctagtaaac     10440
     aacttgtata catctattaa acatatacaa accagatact aaacaacttg tatacatcta     10500
     ctaaatatat agtaaccagc taatcagtat tgtaattaaa gagtttatta aacttattca     10560
     gaatcttaga caatgatgcc ttactcatac aaatagtata caaatagaat agaattagaa     10620
     aactagaact agaaaaatag ttgacaacaa aaaccgatat taccaggtcc caacacctct     10680
     atcataaact tcaatcaaaa attaaattga taggcgctcc tatgctagct aatgatgcct     10740
     tcgaaatatg ttacaatatt attatgggat ggaacaaatg aatgctttaa aaataattca     10800
     gcatctgaga aagattacat tgtgagaact attttacatc tatctatggg aaccaagcga     10860
     aaatctacgc ttggaacgaa gattaataag cgacatgttt cttacagagg gctgaagtaa     10920
     gaaaattaat tatatacaaa tatacataaa atataattaa ttatgaattt aatgaaatat     10980
     gtttacaata ataaaatata taaagaaata ttgaataatc ctacaaattt tgtatctgac     11040
     tgtaattaaa actccaggta caaatgaagg ggaagtattt tattcaatgt ccttgggtct     11100
     tgggcatgtg actttgatga cggtcaggta atgatagttc actgcaagtg tgtttggcta     11160
     acacatctta gaaactttaa cttgtgtact ttgatagttc ttaataagag actatagcga     11220
     ctcataatac ttgttaacat ttagttatca tctaaaacca agtactttac agatactata     11280
     cagatagtaa ccatccaaaa tcaagtactg tacaggtact atacaaaaag taaccatcca     11340
     aaagcaagac taaaaagaaa gtaaccatca aaatactgct aggtaacaac taaatacaac     11400
     gagtccaacg tgtcaagtct atgtcggtat ggctactacc ctaaaaaatt gtatatctct     11460
     ggataatctt caaagtcaat acctattaaa ttctggatgg agcagtggag acgaaatttc     11520
     tacgggatcc ccaattaaaa tttttctgta ccattaaaaa atttgttggg attgactgag     11580
     gattataaaa aagttttgtt aaattgtaag catgaactag tgttgatgct aactaagaat     11640
     cttggtgatg tgtttgagca aaccagaaat gaacaaactt ttaagttgga aattacgaat     11700
     aaaatctgga aaattcccca tgtaactctg agcgattttg caaaaaatta agatgtacga     11760
     tattattaaa agtggtgtaa acctaccaat cgcattccgg agttgggatt catatgttaa     11820
     cgccaaattg gggtatggaa gtcaacacag ctggaatgtg aaattgtcgg ctaaccgcaa     11880
     aaaaccaaga tttgccataa ttggatttac actaaatgga gaacttatca caaataactt     11940
     atcaaacttg aaagttcact tgaattctga gtcatatcca tgtgataatc tgaatgttga     12000
     ttttagtaag aattagtatg ctcacctata tgaaatgtat acaagatttc aatctagtta     12060
     atcgtgaatc acaaccattt ttgaccccaa atgaatttaa attgaagacc cctattattg     12120
     tggttgatct ttcatatcaa aatgaatcag taaaattggt cctattgatg tgagaatttc     12180
     aatagaacta aagacaccaa gtcatgaaaa tacccaagat tattgtctcc tcatacaaga     12240
     ccgtttagtt gaatataacc cactaaacgg actagtacaa cgagttgttt aacattagaa     12300
     aaatgttgaa agatactgtt tcgattgatg ttcaaggttt ctttgataat aataataatt     12360
     ttattctaaa ggaaattgga attgtattcg aaaaagatcc aaacttgaat aatagttttt     12420
     taatagaacc accatatgat tttactttgc taaatacaaa atctcgaaag actgcaattt     12480
     ggttaaccaa tacacatcac aaaatttttt ggaacgatgg agaaaatagt tttccacaaa     12540
     ctcgaaagta tctaaggaca attacaagcg gaaaacaaat tatttgtaaa ggtgtggaaa     12600
     agaaacgatt tctacagacg ttttttggga gtcgtcagct cattaatgtc gaggaaatgg     12660
     gctgtccgtc attaaacagg tttaaaggaa accggtttcc ctattgtgaa acacacctta     12720
     agggcggggt ttgtgctcta aacaatgcat acattatttt gacatttttt aaaagtagct     12780
     tcaaaacaat aaaataattt ttatacatta ttttaaagtt gagactagat gtgtaaggat     12840
     gtgcaagaaa acaaaattaa ccaaattaag tttcatgagg aaattgacca atttattgaa     12900
     caatttaaag gagagataat tggtcagcat tttcaatacc ttctaaacac aaaaactatg     12960
     ttcatgaatc gaggtggaca tgacctcaaa actacgaatt atggtgaaca ctttacattt     13020
     tgtaatccag aaatgacgtc ggaaacgtgc gcctgcttct tctatgcaaa tcgccggaat     13080
     catagcagaa aataaatttc tatatataaa aaaaaatgtt cgcaatacca aaataaataa     13140
     atgtaaatga ataaatgtat ttttatggta caaaataaac ttctgacatt ttatttcgag     13200
     ttaaaattac aggtacggag aatggaaaat atttccttga ctgagatatg tcggctactt     13260
     gcgagttgtt gcgcggtcgt gacttcaacc cctattatgg gaacgtatta gagctcgcac     13320
     ttagccgtga ggtcgttggc gtgaggctca tgattttgtc aatgggcgtg cgccttcaga     13380
     cttgtgcatg tgtccctttt attccggtca ggtaatagac aggtgcgcat gttcgggtag     13440
     ctcttgcttg aatccctttt atgatatgtt tatgacccgt ttgtagaaag gagagatctt     13500
     gaaaaaattt accagttaaa cattctgggg cgaaaaaaaa gtctgtttga aaatattcga     13560
     catctgagaa tcattaactt gtgggattta ttttatttgg ggttcttttg atttctaaat     13620
     tagttttaca atcataggaa acgttattcc ccaacatgat cggacatgtc cctctaaggc     13680
     aaccagcttt agatgttttg ggtttgcgac ctttctcacg tgcacagcaa cacctgctga     13740
     atattaattg ctgataatga ggaaaaggat acgtgatcaa tattgtcaca tggagatgtg     13800
     gggaaagtgt gcgacctttc tcccgtgtac agcaacacct gctgaatatt aattgctgat     13860
     aatgaggcaa aaaggtcacg tgatcagtat tgtcacatgg tggtgtgggg ttgggggggt     13920
     ggcaatttag tatactcttt atggatatga tcgtgacatt tttatgacat ctaaacccct     13980
     taaaatcaga taatttatgg attatgttaa ttgtcccaga acccgcatac attaatgaag     14040
     aggcgggggt cattaatatg ttaattagtg agaggcgggg gtcattaata tgctaattag     14100
     taagggggcg ggggccatta atatgctaat tgtcccagaa cccgtctttc cctactact      14159
//
ID   Polinton-2_DTa repbase;    DNA;    INV; 17104 BP.
XX
AC   .
XX
DT   15-JUL-2021 (Rel. 26.11, Created)
DT   05-AUG-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Polinton transposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-17104
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6206-6206 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 17104 BP; 6017 A; 2793 C; 2799 G; 5494 T; 1 other;
     agtagctata ttaaaggcta tttcacattt ctttcatggt ttaaaaagga aatcacacac        60
     accaggggtt ttctcaaaag taaactgaat acattcactt tctataccac atttctggta       120
     acagaacaca cataaaacag gtctttgagt aggcaaaagg tttcaattgt tacctgcatt       180
     gtcaccaaaa aacaacctca catctagcca acaataaaaa aatccttgaa cccttgaatc       240
     cttgaatact catattatag cgttaaaaag gtttcaatcc ttcagagaga gagggtgaca       300
     ccctctggat tggattttct gtaaaataag tataaaacat agactgtgaa attaataatt       360
     tagtggtaac cattctaact taaaatataa tatttagttg taatcaaaaa tattcagggt       420
     aacctggact tgatagagtg ttaggatcaa atgatattta aatgataagg aaaattcttt       480
     acaattattt tattcgtttt agtacaatcc gtgcacaatg ggttgatagg aagaacttta       540
     catcacgcga ttttgaaaat tttttgcata tttttccgca gaaggggggg gagattgaga       600
     gatagacata cgggcgcttt accatcccac tagcgccacc tggtgttagc cgggtttcaa       660
     acctttagcc aagtttcgaa cccggttcgc gtctagggaa tatgtgcgcc acctggattt       720
     agtcgagttc caaacccggt tcgagtctag gggaaatgtg cgccacctgg atttagtcga       780
     gttccaaacc cggttcgagt ctaggggaaa tgtacgattt gtatgaaatt agttttaaaa       840
     gcagtgtcct taaaaatcta ctgcatgtct atctctcaat ctccccccct tctgcggaaa       900
     aatatgcaaa aaattttcaa aatcgcgtga tgtaaagttc ttcctatcaa cccattgtgc       960
     acggattgta ctaaaacgaa taaaataatt gtaaagaatt ttccttatca tttaaatatc      1020
     atttgatcct aacactctat caagtccagg ttaccctgaa tatttttgat tacaactaaa      1080
     tattatattt taagttagaa tggttaccac taaattatta atttcgcagt ctatgtttta      1140
     tacttatttt acagaaaatc caatccagag ggtgtcaccc tctctctctg aaggattgaa      1200
     acctttttaa cgctataata tgagtattca aggattcaag ggttcaagga tttttttatt      1260
     gttggctaga tgtgaggttg ttttttggtg acaatgcagg taacaattga aaccttttgc      1320
     ctactcaaag acctgtttta tgtgtgttct gttaccagaa atgtgggata gaaagtgaat      1380
     gtattcagtt tacttttgag aaaacccctg gtgtgtgtga tttccttttt aaaccatgaa      1440
     agaaatgtga aatagccttt aatatagcta ctttcagcta aagttgtatt ggccagaata      1500
     acctgagagt ataggcttga acctgttaca atctttacaa gatcctcccc caaccaacca      1560
     atatcggata tttctttaga acccatagct actttcagct attgttgtat tggacaaaat      1620
     aacctgagag tacaggttgt caaacctgtt agcgataata tgaaatcttt acaaatcttt      1680
     tgaacccacc caagtaaaca agaacacctg gacatacaca cccctgttga gtcgccatca      1740
     cagatctttc ccacccttac acatgcacac acacacacac acacacacac acacacaaac      1800
     ccatcatgaa ccaatcaacg tgaatttagg aaaaacatgg tttgaacatt cgactgctta      1860
     atatttaaaa ttagttcttt aatgcaaagg aatacagaaa catcgtcggt tttctaactc      1920
     caattttttt gttcaatcta atttgattta tttgacaatt tttataatgg cgtctgtgca      1980
     gtgcgatatt tgcaacgagc atattaacgt gtcggtgttc gagtcccatt atgaggggtg      2040
     ttcgaaaaac cctcatgaaa aagtgcgtaa tataaaaatt atttgtgact tatgtcaaaa      2100
     aagtttggaa agttccaaat ttgacgaaca ttataaaaag tgtaatgggc cgaataatgc      2160
     attcgaacta ttgatgaatg tgcagaatca tgtggatgaa cagccttcta cgtcaagagc      2220
     cgctgctaaa aggaatgcaa tggactctac cactaaaaac caggaaaaag ggattaagcc      2280
     ccagaaaaaa atggtctgtg agttgtgtaa agaggtttac cctgaatcgg gatatcttaa      2340
     gcatgctact acatctgagg atcatatgag ttttataaaa gaatttgatg agcaatataa      2400
     aaagtctgct tgggcgaata atgcatacaa cctattgatg aatgagcaga atcatgtgga      2460
     tgaacaacct tctacgtcaa gagccgctgc taaaaggaaa aggaatgcaa tggactccac      2520
     aaaaaaaagc atggaaaaaa ggattaagac acaggaaaaa aagctatgtg agttgtgtgg      2580
     tgatgtttac cctgaatcgg gatatcttaa gcatataaca tcggagaagc ataagagtgc      2640
     agtagtgagg tataaaaatc tcgaaataat tgagatggct tcgaaaagtg aatttccaat      2700
     aaagtcatat cgagtgcagg ctccgggaac ggaatgcatt gatattaaag acttctataa      2760
     taaatgtcaa gctaatattt taaaaatcct gactagttgg agtgaagaat acatttctat      2820
     taaatttagt ataaaagttt atggaatgta tgtaaaattc acagatgaag gtagttgtgt      2880
     tgaaacacta aagcattttt caactgctta catatcagtt tatgatggat ttgatttagt      2940
     cccactcatt gatagtgcta tggactattt atcaaatgca tgcagtgagt ttcaggagag      3000
     agactcagga tgggccataa aggcttttaa atattttgag attttagtaa taaaattaga      3060
     gcacgtccct gttaaaggat ttattcccgc tccacctcca attaaggcaa aaaacgcact      3120
     gattaatgtc aacaattttg ataactactg ctttaagtgg tgtttgctcg cctcgattgc      3180
     ttataaaaat cacctgacga caatttttat aacagacaga cagcgcagtg ctgctagaga      3240
     gaatttgcaa tatccaaaaa aatatagtgg atttgcaatt tcacaagatg taatttgcta      3300
     caaaggagtg gaattaaact ttaccggaat agagtttccg ataacaacaa atggtataaa      3360
     gaagtttgag aaacaaaatc aaacctacag catcaatgtt tacggaattg attataacag      3420
     gaatctgatt attggtccta ttgtaagaag tgcaaataga tcaagaccaa atcatattaa      3480
     cttgttgaac attgaagatg gaaaaaacag gcattatgcc tatataacaa gtatgaaaaa      3540
     gttatgctac tcgcagtata caaagtcgag atctgctgca catttttgtg aggattgttt      3600
     acaattcata acaagtacaa atactacaca tgccacaaag gagtgcggaa aagttgcctc      3660
     tgaatatcct aagcccaacg aaactacgga atttacaaat ttttataaaa aactatcacc      3720
     acctgttgta atatatgcgg acattgaagc tgtgttgagg agttaccata ctgttaaaaa      3780
     cacggcaaca gtctcatcaa ctacaaaaga aaaggaacac attgcctgcg cggtatcatt      3840
     ctacgaggta cataagtaca acccatcttt aaatagccaa tggacctacg acggtaatta      3900
     taaacagtta taaagttata tattatatat ttatttatat atattttctt cttaaaggtc      3960
     cagactgtat tcaacaattt tgtaaagccc ttaaagacac aactttgagg ctttataatc      4020
     gttactgggg tcaccatcca gagacagccc gggagttgga agcatgggag gagtacgccc      4080
     aggagaatga aacttgctgc gcctgtgaac tcccaatact agatttagcc ggtaaatact      4140
     ttaatcaatt tacgggttgc tacatggggc caattcataa aaaatgtcaa tcttattata      4200
     agctgaacca tgcatttttc ccggtagttt ttcataacct ttcacgatat gatattcatt      4260
     tatttataag agaattaggt gacaatttaa agccaatacc ctgtaataag gagctttata      4320
     tttcattaac gcaaacgatt agaataaaca acagcatgca atataaaatt caattcattg      4380
     attcaaatcg atttttaaat tcaagcttgg aaaaactggc tagctatatg gacaattcaa      4440
     gttttaagct attaaacaaa aaatttcagg gggaaaaatt tgaacaaatg aggcgaaagg      4500
     gagtatttcc gtatgacttc ctagatagtt ttgataaatt taatgaaaca gcgcttccac      4560
     caattcaata ttttttcaat tctctcactg atcaggaatg ttctgtagag gattacgagt      4620
     ttgcccagaa ggtctggtca acatttaagt gtagaaatat aaaagattat ttaaagttat      4680
     acttagaatc cgacgtaatg attttagcag atgttttcga aaactttaga aagatatgtt      4740
     tacagatata taagctagat cccgtaaatt atgtaacagc cccatcaatt tcatgggatg      4800
     caatgttgaa atttactcga gtaaaactaa cattaataag tgatcccaac atgtacaatt      4860
     ttataaaaag atctatacga gggggtttga ctcaatgcac ccaacgaatt tctaatgcaa      4920
     ataataaata tatgagagat tttgataata aaaaaccttc taatttctta gcatacattg      4980
     atgctaacaa tctatacgga tgggcaatga gtcaacccct tccactatca aattttaaat      5040
     ttttaaatga tcaggaaatt aagcagttta acttattaaa tatcccagaa aataccgata      5100
     cagggtatat gttagaagta gacctggaat atccagttga gctgcataac gctcataatt      5160
     ctttaccctt ctgtcctgaa agtaaaatac ctttaggttc aaaaacacct aagctaatag      5220
     cagatttaac aaataaggaa aattatataa tccatttaaa atatctgcaa ttatgtattc      5280
     agcacgggct taaagtaaaa aaaattcata ggatactttc attcacggaa tctaggtggt      5340
     taaagccgta cattgacctt aatacaaaac accgaaaatt agcaaaaaac gaattcgaaa      5400
     aaaatttttt taaattaatg aataacgctg tttacgggaa aacaatggag aacgtagcaa      5460
     aacgccggga catagttctt atatcccatt atcattcaag acaaaattca ccagggttta      5520
     gacaacgtat agctggccac aatttccata gcgtagaact atttggaccc aacttagctg      5580
     caattgaatc tacacagact attattcgtt atgataaacc tatatatatt ggatctagtg      5640
     tattagagtt atcaaaatgg ttgatgtatg attatttcta taattttctt gctgtaaagt      5700
     gtccttcgtt aaaaataatt tatatggata cggattcatt tatactatcg tctaaagaag      5760
     acttttactc gttaatcaaa gaaaacccag accgttttga cacatccaac tttaaaccta      5820
     ataataaata taatattata cctgctaata ataaagaact gggtctaatg aaagacgaga      5880
     acgcagggca agttatgacg tcctttgctg gtttaaaggc caaggcctac tcaattctag      5940
     tggaaaagga tttatatcta gtgggaaagg atagtaaaca aagtcaatat gaaagtatta      6000
     aaaagataaa gggtgtgaaa aagtctgttg taaataaatt atctcattct gattatattg      6060
     aatgtattaa acaaaagaag acttattatg gtgagcagcg aaccattaga agtagagcac      6120
     atcatcttta tacggaaatt gttaacaaaa taagccttaa ttataaggat gataaaagat      6180
     ttgtattatc tgatagcata aatacattag ctcatggtca taaagaaata cctgataaca      6240
     taaatacgtt agctcatagt cataatgaaa taaaccattc ttaagtttat tagtatataa      6300
     ttgtaaatgt ttatatttaa atgaataaaa taataaaata aaatttcttt atgtgtttgt      6360
     gttatttttt caatttttta tttcagcaaa ctttttttat ctatccacga ggagtgacta      6420
     tcgtcaaaac cgagccactt aaccttgatt ttattctttc gtcttgcaat tattttttct      6480
     accaagaaag catttggatc tttgacaagt tgaagttctt gatcataaaa tgatcctctg      6540
     atgggttcac ttttataatc cttcaactca tatgttaccg gattagtagc cttaactttt      6600
     attactttaa aaacttcagt tgtccaattg ggttcataac ctttcataaa tacaccctta      6660
     tatttactta ttctaacgta atcccctata gagaatttat gtctcggaaa aatctttgga      6720
     taattataaa ctgattttaa aataaattct tcattttggg cgcatacatc caccggtttc      6780
     attttaatgg ttctgtgata cgaattatta tattcgtaca caaggtcttt gattttatgt      6840
     atccatttat atttaccaat catactaaac attttccaca tgcgactttt taatgttcga      6900
     ttaaaacgct cgcatataga tgcctttaag tgtgtatagg tatgataatg atttatatgg      6960
     tgactcttca ttaattctcg aaatcttgaa ttaaaaaatt ctttcccttg atcagactga      7020
     atattttttg gtttagtttt agcagttata agcacatttc gcattgcttc aactacatcc      7080
     gttgaggact ttgatttaac aggctgggca tatgcatatt ttgaaaatgt atcaataaca      7140
     gtgagtaaat atttatatcc acaattttct ctgctaaaag ggatcatttc aactaaatct      7200
     atttgccatg tatcatttat ccccttttga acaaattttc gtctgatgaa attttttcga      7260
     acctgtttat gaatttcatt aacaacttcc tgtttgctca ttttgtattt ataaatatta      7320
     ttttttatta gtttgtgatg aatgcttaga cataagtgat tgcttatatt caagtacatc      7380
     gctttttatt tctttacgca tcttttttga tatttcaaag cacaatcggg ttaaatctat      7440
     atgcacattt ttatcgtaag acccacctaa atcagttagt tggatatcat atttttgtaa      7500
     agatacacac ttaggtataa tatgattata gtaaaggtat ataacttgct gttttaatat      7560
     agaattccaa cataaaaatg ttgtgaaaaa tatacctaat cgtataaagg atctccagga      7620
     ctcactatca aattcaattt tgttgccata ctgatttatt accattacgt attgcttatc      7680
     agatttccga aatctaaaat tacattttat tgtagacatt aatggatgat caataattgt      7740
     gtccggcatc aagaaatcgt actgatccag tcttaattga atgtactcct tgtacgtaag      7800
     aagttgaatc cattgatcct tttcaaatcc aacaaaattt tttttgtttt gttgcatcca      7860
     caccattggt gaaaattttc gggttgttga taaaccacat tttagtctta aattatgtaa      7920
     cacatagtat tcaaaaccaa aaatgacttc atgatcttga ttctttcggg aatatctatt      7980
     tttcttatct tctcgcgtgt ccataccggt tgatccctta attagaacta ccttcttatt      8040
     gcaatcggac cgctatataa aggtaaaagt ttgggcacta gactacccag ttgtgaaaaa      8100
     aatctcgaac aatcatgaac actgtcgatc gaaactccac cgttatagtt gactttcaat      8160
     atttacttgg acccaataaa caactatttg ttaaggagct agcattcatg caggctggaa      8220
     cagttatacc gaacttcttt catttcaaac caccctttag tttaaaggaa ttggataatg      8280
     acacaattaa acaacacact ttaaatcgag atagtataac tggattggat tggtcgtcag      8340
     gagatgttcc atatacagca ctagatgaaa tactcacacc cctgaacaga tatagaacta      8400
     ttattgtgcg cggtaacatt aaaaagtatt ttttgactaa atatttatcg acaactatta      8460
     ttgatataga tattggaaca agtttaacaa aactaccaaa ttttttcact aattgtctaa      8520
     tacataaaaa taaaccacca cttagatgtg cattaaataa tttgtttaaa ttatttgtat      8580
     acttagaaaa ctcaaattat gaaatctatt gttgtgttga cacacttgtt taagtcttag      8640
     ttaataataa atagttcaag taagaggacg tttcataatg gaattcatta ggagtttgtt      8700
     tggaaaagac ccccgcaaaa tgggctatac tcagcttatt tattgtaatt attgtggatc      8760
     taatactcat ttcgagaaaa actgtgctaa aaaacgagat cggtaaaaat atatatatat      8820
     atatatataa accctttgta aatagggatt acattataaa gtcgaaaaat ttaaataaat      8880
     ttaaatattt tatataaaaa tgtttacaca attcattcat cctttcacaa tgttaatttg      8940
     tggaccttca ggatctggaa aaacaacatt tttagaaaat ctaataaata aaaagaatga      9000
     ccttttaaat atttcaatag atcgaattat ttggtgttat ggagaagaga gtgcaaaacc      9060
     tagttttaat agtgttgagt actataaagg agttcctgaa tctattgaaa atgaaactaa      9120
     cgaaccaatt cttttaatat tggatgactt gatgatggga gcatttaaca aaaatgtttg      9180
     tgagctgttt acaaaggggt cacaccatag gaatctatca gtagtagtgg taacacaaaa      9240
     tatatttcat aaatcttcac acaccagaga tatttcactt aacacgaaat atattgttgt      9300
     ctttaaaaat cctcgtgaca agcttcaatt tcaatgttta gcaagacaaa tttatcctga      9360
     aaacccgacg gagttattca gaatatataa agaagtaact gagcaaccac atggatattt      9420
     acttattgat ctcacccaag gagttaacga tcttttaagg tttagaacag acatttttaa      9480
     ttctgaatgc acagtgtgct acgcaaatga aaatgactta caaaaagagc ctaaatcgat      9540
     tgaaagcgaa caaacattta ttgtatgtgc tcaaaaaggc cgacaataag cttcgtaagg      9600
     caataataag caatagtgat agtgagctga taaaaacaat agtggaaata gttctaaaca      9660
     cattacaagg aaaccataag gttacaaaat cccatctaaa tgccttaaaa aaatataaaa      9720
     atgcattgcg gtatctttca tgttcaaaga gcacaataaa ctcaaagaga aaagtcctta      9780
     ttcaaaaggg tgggttttta ccgattctca taacttcatt actttcggga atatttggaa      9840
     aaattttaaa aaatgattaa aaataagcat aatttaagta aagtaatttt aatgcatcct      9900
     accacttttc aaaaattttt gaaacacgat cgaggaaatg aattaataac aatgaaattt      9960
     ttaccaattt taaataataa caaaattagt gattttgaga aatggataaa aattcgacaa     10020
     gaattgagta tctatcaaaa taaaaagcgt aataaatcgt ggggtactcg aaatgaggaa     10080
     aaattaacaa ttactccatc catatcaacg gaatcaccct catcatcaga ttgggttgat     10140
     ataaaaccaa ccacatcaga ttcaaaaccc aaatttgatg aatcacgctt aaaattatca     10200
     gacctaccag atttacctcc cgaaagcgaa gatgaagatt ttaaaccaat tgaaatacct     10260
     aacattaaac gaaaggttgg ggaaacttct tttttagata ctaagatcga tgttaaaaga     10320
     aaatcactaa caaaagtgaa gcttaatgat aaacaacgaa aattaagagt aaagttaaaa     10380
     aaatataaag ctgaaaaatt accatttcaa gatctaacat atgtaacagg acgcgaaaaa     10440
     cttattagat cgcttcgacc caggaatact gtacaaatag ggaaaaacca aatcaattgg     10500
     atttcatatt aataccatta aatttataaa ttaagatggt atatttaaat gagatgttta     10560
     tcacattgct tagtaatgat tcaatgaatg tatttcctga taatgtaaaa tgtgcattta     10620
     caaacattgt aaatatacca gaagacatga atgattcttg ggatgtaggt ataacagaca     10680
     tatatttgaa taatcacatt aaacatgcac caaataaaga aacaaatgta gttgaagaaa     10740
     cagaatttgt tagtcttgta aatgctgaaa catttagata taaaaatgta tctattgaat     10800
     cgaaattaac tgaaaatggg ttgattttta tttacacaga tataataaaa ccaaggtcag     10860
     taggtagtaa aagacctaga tgtcttcgtg taatgcatta taacggaaag gaaaaaaata     10920
     ttcagtttaa aaatattgag tattatcctt tagatatttg gtcaccaaaa gaaatctcaa     10980
     tacttattac ggattcaaat ggatataagg tcccatttga aacatcatct gttccgattt     11040
     tcgttactct tcactttaga agaagatcac ctctataaat aaaacaaccc caaataatat     11100
     ttacttagaa cacaaactga catcatggtg aaatcttatc aggaatatta tgtgaatcag     11160
     tgtggtgggg gtttaagcaa cattggaaca ttgtatgtat caccgcaaat agtacaacaa     11220
     ggacgtggaa tcggaaactt ttttagcgga ctttttaatt acataaaacc acttttcctt     11280
     tctggtatga atgctataaa aaatcaggct gcgcagactg gtaaagctgt ggttaatgaa     11340
     ttggggagaa aaccattaag aaatattatt caggaacaga gtaaaattgc tttacagaat     11400
     ttgtcaaata aagcaataga taaagtaact cgctttcaaa gcggaaatgg aaaaagaagt     11460
     aaaaagcgta gggtaaggaa aaaacgagct cattcattat cgaaacgaca acgtagtaat     11520
     accaaatcga atcaaaaaag aaaaaagatt acaaaaaaat ttaaaataag tgatattttt     11580
     tctaatacaa aatgagtaac catatcgaat gcatgaagag tgaattggat ttatttgctc     11640
     cacatccaac gcaaagttca attttaaaaa ctgaagaagt ttcatacaac ccaatcgctt     11700
     ctttagatgg agcctcctca atcgaattcg tgtgcttagg aaatggggaa acttacagag     11760
     atttatcaag tgtttattta cgtttagtag tacaacttag aacaaatgac aacaactcca     11820
     ttgaaggaaa cgcagttggt gtagtaaaca atattttaca ttcattgttt cgaagttctt     11880
     cagtttattt aaataacata ttagtatcac agaatgataa taattatcat tatagagcat     11940
     atttgcaaac acttttaaac tatggtagtg acgcatctga aagtcacttg gcctcccaag     12000
     gttattaccc aaatttcggg cgaatagccg cagggaaata tgtttatcca gcaacaaatg     12060
     aaacccgtaa aaatattttt caaaatagta acaaggttga attatttgga aaaattcatg     12120
     gtgatatatt taatcaacca aaattacttg tcaataatgt agatctgaga attaatttca     12180
     atatcgaaaa gacagcattt tatttgatcg aaaatggtac cgaatcaaat ttaaaaatac     12240
     tagaggcaca actgttcatg aatcatatta cagttaatcc aagcatttta ttagcacacc     12300
     accatgtttt acaaacaaaa aatgctctat acccgtttaa caaagttgaa gtcaaatcgt     12360
     tcaccatata tcctggtaat aatacattat cgatagacaa cgcagttatt ggtcaactac     12420
     cgaattttct agcattttgc atggttaaga atcggtcgta ctctggaaac cgcagcttag     12480
     acccctttaa ttttgaaaat tttaaaattc aacgatttaa cctactggtt aatggagtgc     12540
     aagttccatc tcaggctctc gagtttgatt tctcgaacac cgaaaatatg caaagttctc     12600
     gaggatataa tatgctattt aaatcttgtg gaataaaaca ttttgatcgt ggactacaaa     12660
     ttacaaagga aatgtttgat acaaacagtt ttatattagc ctttgatcta actgctgatc     12720
     attctatttc aacaatttgc tcaaatttaa tatctcaagg caccatcaga attgaaggaa     12780
     gattttcaga accacttact gaagcagtaa cttgcttagt atattgtgaa tacgactcta     12840
     tgattgatat tgataagaat cgaaatattc gagtacttct ttaaaatgaa tacaattcaa     12900
     attcaacatt tacttacgaa gaataaatat acaaaaccaa tttttaaagg tgtttttcct     12960
     tcagatcaac taccaaaaac catttccaag tatccagcac taattattgc taacaccgat     13020
     acttctacac aagctggtac tcattggatt gccatttatt ttgagagtca caaatcagca     13080
     gaatattttg attcatatgg acaatatcct cagttaaaag aattcatagt atttttaagg     13140
     aaaaattcaa gaaaatttgt ttttaacaaa cagcaactac aaggatattt ctcacacaca     13200
     tgtggtcatt attgcatcct gtatgggctt tttaaaagta aaaagaaatc attagtttgt     13260
     ttcttgaaaa aatttaggaa gaatgatttt tcgtataatg ataagttaat aatgaaaatg     13320
     tttaaaacaa actttaaaaa taaaaagtca aagtaaatag aatattattt aagattattt     13380
     attgcttggg ttctatacaa tcgttggttt aacttataat atttcaacat aatatttagg     13440
     gcttcttgtt ttaaaatcgg taagctatga cactgacagg tgtctggtcc agcagttgca     13500
     tcgtcatcac tccagggaca aagcttataa tgaaacccat acttggagtg aataagctct     13560
     ttgtcctcca agtcctctaa ggtaagcctc aaatattcca gtcgtctggc gtgatcctca     13620
     aaaatcatat cttcaaattg catgaggaac aactcaattt gtttggagta catttttgat     13680
     taactttact cttcctggat taagaaaaga ctgatgtgga atgaagataa ccactggttt     13740
     atattggaac tgctatttac tttatttagt ttttcattat aaattcgaac gtaggagggg     13800
     aaaatctttt tatatctttc cctttatata caatatgaga aattccattc tcgctcaatt     13860
     tcttaaaggg tgtctttgaa gcaaacttgt ttacataact tctcggtaaa aatatccaaa     13920
     tctcatcact gtccttgtct gttaaataaa gagctatttt agttccataa ggtgttttct     13980
     tcagtttaca accaatgatc ttatattcaa aatctacaca tagattctcg atttttgtat     14040
     aaccaatcat aggcttcaat tggttgagtg tgtctataaa ggcctaaaat acacacacat     14100
     tagttttcta ggagatatac atatatttaa tatggtacaa accattttga gcagcgttat     14160
     ttttattggt tcttttcaga gaattcactg atgtatacta acttatttat acgataccgt     14220
     acagcctttt atacgttcaa actgtacact cttaaatata tatatatata tatatataaa     14280
     ttgtatatat atatatatat atacaatatt ttgtatgtat agtttttata cagcgtagga     14340
     tagtgttcct tctacatata tagggcaagt tgtataaagg attgttcagt ttattttata     14400
     atttcagaat gaccacgttt atttgtgaac tctgtcctaa aacgaaatca tttactactc     14460
     gaaacgctct gaaagtgcac actttaagta aacataattt tagttatgag aaatcaaaat     14520
     caagctacta tgtgtgctgc ttctgtccta taacaagaaa attctggctg cggaacaatt     14580
     tgcttatgca catcctactg gtacacaact tttctctgaa atcacaattc caccctgata     14640
     tttggacgta tccgaaaatg ttattagata attccaataa ataaaaacta taattaaata     14700
     caagtgaatt gaatgtttat ttattttata tatatatata tttttttttt ttttttttcg     14760
     aaaaatggac atttttatta ctttttatga ttgtagtagg ctacacaatt gtgtgttcca     14820
     actgtcgttc agtaaatcca ataaaggatt aggaacctct tctattccat caaaaatgtg     14880
     gtcgtcctcc ggaaattgaa aaattgcttc ttgggagtcc agtaaaaatg cgtcatcaaa     14940
     tggttgaccg taaatttgct gcgcccaatc gaccgactcc tcattttcct ttggggatgg     15000
     tacgccatcc aaatactggt tccagtcgtc cttccagctt tcctgcgttg aggaaacaca     15060
     aggcccgaac acatttctca gtgtttcatc aactgagtcg acttcatcga tgacaattgg     15120
     ttcatcgttg acgaactcaa cagaaattat tgaatcctcc atttgtgaaa tctaagttgc     15180
     tactgactcc acaaacaaac agttctcatt ttatatcaag gaacacccac ttgactcttg     15240
     tatgaatgtg taaggtcagt agaagttcta ttgttcgatt ggttaactgc tattgaacca     15300
     ctgaaaatga aaattgggat ttctagttgt gtgtgtgtgc atgtgtaagg gtgggaaaga     15360
     tctgtgatgg cgactcaaca ggggtgtgta tgtccaggtg ttcttgttta cttgggtggg     15420
     ttcaaaagat ttgtaaagat ttcatattat cgctaacagg tttgacaacc tgtactctca     15480
     ggttattttg tccaatacaa caatagctgm aagtagctat gggttctaaa gaaatatccg     15540
     atattggttg gttgggggag gatcttgtaa agattgtaac aggttcaagc ctatactctc     15600
     aggttattct ggccaataca actttagctg aaagtagcta tattaaaggc tatttcacat     15660
     ttctttcatg gtttaaaaag gaaatcacac acaccagggg ttttctcaaa agtaaactga     15720
     atacattcac tttctatacc acatttctgg taacagaaca cacataaaac aggtctttga     15780
     gtaggcaaaa ggtttcaatt gttacctgca ttgtcaccaa aaaacaacct cacatctagc     15840
     caacaataaa aaaatccttg aacccttgaa tccttgaata ctcatattat agcgttaaaa     15900
     aggtttcaat ccttcagaga gagagggtga caccctctgg attggatttt ctgtaaaata     15960
     agtataaaac atagactgtg aaattaataa tttagtggta accattctaa cttaaaatat     16020
     aatatttagt tgtaatcaaa aatattcagg gtaacctgga cttgatagag tgttaggatc     16080
     aaatgatatt taaatgataa ggaaaattct ttacaattat tttattcgtt ttagtacaat     16140
     ccgtgcacaa tgggttgata ggaagaactt tacatcacgc gattttgaaa attttttgca     16200
     tatttttccg cagaaggggg gggagattga gagatagaca tgcagtagat ttttaaggac     16260
     actgctttta aaactaattt catacaaatc gtacatttcc cctagactcg aaccgggttt     16320
     ggaactcgac taaatccagg tggcgcacat ttccctagac tcgaaccggg tttggaactc     16380
     gactaaatcc aggtggcgca catattccct agacgcgaac cgggttcgaa acttggctaa     16440
     aggtttgaaa cccggctaac accaggtggc gctagtggga tggtaaagcg cccgtatgtc     16500
     tatctctcaa tctccccccc cttctgcgga aaaatatgca aaaaattttc aaaatcgcgt     16560
     gatgtaaagt tcttcctatc aacccattgt gcacggattg tactaaaacg aataaaataa     16620
     ttgtaaagaa ttttccttat catttaaata tcatttgatc ctaacactct atcaagtcca     16680
     ggttaccctg aatatttttg attacaacta aatattatat tttaagttag aatggttacc     16740
     actaaattat taatttcaca gtctatgttt tatacttatt ttacagaaaa tccaatccag     16800
     agggtgtcac cctctctctc tgaaggattg aaaccttttt aacgctataa tatgagtatt     16860
     caaggattca agggttcaag gattttttta ttgttggcta gatgtgaggt tgttttttgg     16920
     tgacaatgca ggtaacaatt gaaacctttt gcctactcaa agacctgttt tatgtgtgtt     16980
     ctgttaccag aaatgtggta tagaaagtga atgtattcag tttacttttg agaaaacccc     17040
     tggtgtgtgt gatttccttt ttaaaccatg aaagaaatgt gaaatagcct ttaatatagc     17100
     tact                                                                  17104
//
ID   Polinton-2_FoCa repbase;    DNA;    INV; 15297 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-15297
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2494-2494 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 6-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           3962..7639
FT                 /product="Polinton-2_FoCa_1p"
FT                 /note="DNA polymerase B."
FT                 /translation="MSFRSSKLLEVHMNTYHRCEYCDFSANIFDLIEHNEA
FT                 HKRGVIKSMKFDQRGRGLRLNAFPFSEIEAFKGFMKTYRFRNTHEDNNIIS
FT                 VRDFFNRFKFKINQILFHNVSIYNSIKFQITLLCKFKRMHPSVDEEEVEFM
FT                 ETTEQYFNSSLKIILSPLYINRIFCDMVNEIDNNVEIFERNGSGWILDEVK
FT                 GCDIRTAQFEILKGGCSCIIPSHLKNKNAIVNPDNKENDCFVSAFLICMHG
FT                 DSVDNRHRGRISQYEKFKTHYDFSSLKFPTSLKDIIAFEKRHKHIKIGINV
FT                 FGIDQEEQLNVLRLTPHANSRTHKIVNILYIQDAFKQHGHYMSILNFSRLI
FT                 NRQGHHRKFVCYNCLNTFGDEKRLDSHQQLCFEFKTQKVSVPSVVDGKIPF
FT                 CSFESKKLSNKLKCNFVMYGDFEAMLTDDNTSTTSIDKHKISGYNLAVIGP
FT                 NKKLVHISKYRGPNSIDKFIDEVNLQASFCIQRNKIHIAMKQLSLEEEYDF
FT                 SMADSCHICEHDFDHQSIKVRDHDHNTGLFRGAAHRECNASYIQKVKIPVL
FT                 MHNFRNYDSHLLLSSATKFGSGNTFVIPQNSEKFIGIICDKFMFIDSFMHL
FT                 PKSLDTLVTNLHAKPEGFDDKFGIMIQHFSKERAVKLSRKGVYPYSYFSSW
FT                 DKFKETKFPDISEFYNTLTCEGISQEDYDFGKSVFETECTDLGSYHDIYLT
FT                 TDVLLLACVFESYRDMAISNFKLDPCHYFSLPGFSWDAALLSTKVKLELVT
FT                 DQDMYNTIESGIRGGVSMISHRYSEAYNKYMEDYEEGVKEDSFLLYIDKNN
FT                 LYGEALQQPLPVSDFQWESQEFIDNLSIDDILAWGDEDEIGRILVVNLEYP
FT                 CELHLLSEHNEYSLAPEKITISMNQLSKHQRELLTSYNIKYSEKQKKLVPH
FT                 LGSRKMYPVHYRNLKYYLEKGMVLTKIHKIIKFVQRPWLKDFVNLCCDLRR
FT                 KATNKSEQDFFKLIVNAIFGRSMMNVRNQQNVYIVNSIETAKYYSRLSNFR
FT                 KFEILSPNLVLVFMSKPSIVLDKPIYTAFSVLDLSKLFMQVWHYDKIKKWY
FT                 GIKARFLFTDTDSLAYQIKTADLYADLRLVKNDFDFSDFDHTHPLYSTENK
FT                 KVIGKMKDESNGKIMYSFVGVSPKMYSFAGKNIHKIAMKGVKQSLVRKHVT
FT                 HKAFMETLFEQTKYMCRMNLIRSKNHKLTTANYTKVALHSFDSKRFILPDG
FT                 ISTLAHNHFLIPTYNK"
FT   CDS           10395..9781
FT                 /product="Polinton-2_FoCa_3p"
FT                 /translation="MKYVIEFEGFLLPRGFVFKEITICNIKCTEDPTYFQK
FT                 HFFIKPPCHFNSLTVHEKRIVKYCENKLHKIYWFAGRDKFNSVLAYLSTLN
FT                 DATVYTKGLQKANVLKNLGFNWTVINTEDLLVENTEDCSENLPIQDSIECP
FT                 LSFHIDNAQCSHAKALKILNDLSSYMRNESLPKSEPLVSEETCDMQGVEEE
FT                 EDHSGSIPGRDTSTK"
FT   CDS           9530..8646
FT                 /product="Polinton-2_FoCa_2p"
FT                 /translation="MSKKMRVVSEDEYSQLLKKTNTMEHAKTHFFTDKDQE
FT                 ATSVLGSLIPEDIKVQLYSSLMKRVNNQLKDILDKPISVRMVSGEDKSSIG
FT                 KSNTISTNETPPPVTPSSTESTPVGSPEKFTLSESDIKMLKEFPTTQMNKA
FT                 HNLLGFLKCHPEMIKWDKSGRVTFWGSEFEPDSNISDLMSYSIRDLKWTTS
FT                 PNGINRFLRVCKMLNVPAALFSTVVRNDLMGTLDSIPLKQTATLSAHKLSS
FT                 FSAWEPLNQNDALNKTFDPYRTPTGIPQRPRNTKDVTSRQKTSYGFPHDRM
FT                 AFD"
FT   CDS           11042..10395
FT                 /product="Polinton-2_FoCa_4p"
FT                 /translation="MEIEGHSLKLLHPFSLIISGVSQSGKSEFVKKLLTHD
FT                 AQLIEPCPSRIIVSYTENQPAYDDMAKHNNRIEFRQGLDFDMSEFSNKHPT
FT                 LLIIDDQMKDVLTNEKIQTLFTRGIHHNSVSVILLTQNLYPQGKFGRDIRL
FT                 NCHYMVIMRSPTFASQIQYLGKQLFPHNTNFLSDAYKRATEQPYSYLFLNL
FT                 HPLCNDRTRVLQGIFSDEPKYVYIPK"
FT   CDS           12408..13718
FT                 /product="Polinton-2_FoCa_7p"
FT                 /translation="MALINEFSQPSIRGQVELFGLPPTDTTVESSFYAEYK
FT                 PVVNIQDNDAKIDFRITGNASQYLDLFDHFCYLRVKVVASDGKDLPAAAEV
FT                 STSNLFMHSLFSQCDVSINNQLVSTSNNCYMYKAYLETVLTYGTDYINSQA
FT                 TCPLFYKDTDNGSLKDTNTGYKKRKQWIQASKPVELIDKLKFDLAYQHRYI
FT                 LNDTTVTISLARAVETFSLLCGALASGSPAINPKVKFLDASLFVRKHVLYP
FT                 SIVLSHQKLLEGGHSARYPFKKSEVKFFSIPKSSQSFIEENVFLGTIPTRI
FT                 VICLIPSKGFVGDYDVNPYVFPHYNLNYISLSVNNVPYPIKGLQLDFDSDI
FT                 KLLPYYLLYCSLGTAGQDQGLTFDREEFCSGQTFFGFDINQSTGSDSALQL
FT                 EKNGCVRIELKFAKALPEAVNCLVYSEHFKILEIDRFRQISVQ"
FT   CDS           11905..12405
FT                 /product="Polinton-2_FoCa_6p"
FT                 /translation="MKHVHVFHHEHYHRVLENQIGKGIPVFRGYRQKGGGL
FT                 GSILGFIGRYGLPLITKYILPHAAPAIMSTVSDITNGQSIKTALKSNAIKM
FT                 AKKVGKSILKPQAGAGLGSRKRKALLGATSEECKVLHESHHSSNPKKSKAS
FT                 SVKSGNKRKTPTAPKKRRSIFSKRDIFG"
FT   CDS           11787..11035
FT                 /product="Polinton-2_FoCa_5p"
FT                 /translation="MSFYLHLPSNVSPRYYPNNRMSLYKTKLPKRLNFISN
FT                 EYEVAITEFTYVNSLKTFQQDDARKILFPNDPENNIGHRMVKNKQYQDVQS
FT                 LVEEINLCLVLNDEVYASFAYNPETNRVHFLKGCGTFYINVCLANMLGFDL
FT                 YTLDDTCRFDVSRIATNTPNLSRGIYHIFIYSDIIKRQIVGDCLCPLLRMV
FT                 NVSSKKNEAVTHEFRPYYLPLSQLEFDTIEILLCDEFGDELQFEKGQCIVT
FT                 LHFRKQQNGN"
FT   CDS           14287..15213
FT                 /product="Polinton-2_FoCa_9p"
FT                 /note="integrase."
FT                 /translation="MKTDKLLKEIYFNPKHIGSFGGPHRLSAATGVSLKDA
FT                 VTFLQHYETYTTNKSVKHKFFRRKMTSHEVDYCWQADLIDISKYSRLNKGT
FT                 KYLLTVIDTLSRFAFVKPLRKKDGKSVTESFKELILNSNRKPKFIQTDEGK
FT                 EFFNKQFYNLLKEQDIKLFHNHSPLKAAMVERFNRTLMTRLQKVFTYRKTN
FT                 VYYDILQEVVDSYNESKHRIIECSPRSVNKYNQMDVWFRSNKDVLMMKHQK
FT                 PKLKSGDFVRIKINKALFRKGYSPTFTDKIYKISEAHNSKPMTYSIMDNSG
FT                 EKVLGIFYPQELSKVLT"
FT   CDS           13721..14287
FT                 /product="Polinton-2_FoCa_8p"
FT                 /translation="MNSLQLRYALINSMNLFIAVCAKDQLDSINSKTFAII
FT                 SNNQSSNEAGMHWLAFYKETESSVLEFFDSFGMPLGFYGKEFEDFALRNEK
FT                 KVRQSSSQFQSNSSNLCGGYCLYFLINRNRGLSYDKILNKFNSENTLVNDK
FT                 IVSNFVKTNLYFPKCSKCGIECSGKCANSLSDICIQKNRHCVRIFQTIQS"
XX
SQ   Sequence 15297 BP; 5009 A; 2578 C; 2700 G; 5009 T; 1 other;
     tgatgatctt atggtcgcac ttccgctccg cgagcggaag tgcgaccagt gaaggagaga        60
     aagtgaaaga gagaaagttt acaaaatatt aaaatgaaaa aaagtttctt ctactagcag       120
     tttcttctac tagcgaggtg cttccgcacc ctagcgtgcg gatgggagac cagtgaaata       180
     aaagctccac caggagaaaa agttttctct ccgagcagct gctgctacaa ggagcttgct       240
     cattaactaa tgtaagccat gcacgttatt cactactact aatatcaact taaatgcaac       300
     gtgcaatttg caaagaaaat attcacattt gagaggagat tattttaaaa ataaatactt       360
     gcaaaagtgt gtgtgtgtgt gtgtgtgtgt ttgtgtgatg aagggtcata caggatggag       420
     attgatatca ataaattgta acaacagcac caaagatagg atgataaatg aaggttttat       480
     tttctggtaa gtgtgtaggt tacatgaaat atatgtacat atgaaaatac gcatgtttca       540
     ttgcaaaata tttgcaaaat taagcttggt atgcttagtt cattaattat tttagatttt       600
     agttatgatt ttcattatta ttttttcttt cttttcaagt tacatattcc gtcttactgc       660
     aacattgtgt cttacagcgg aaagtgaaag taactcgacc aagagagaaa agtttcttcc       720
     actagtagct ccaacaagga gctcgcccac caactaatgc aagcatgttc ttcaggtaca       780
     gttcaatata ggagacattt tatgtaacaa atattaacat ttttgaggac atttatttca       840
     gttattagat taaatatttg gattaagttt gtgcgtgtgt tttatttatt gaatcaaggg       900
     tcgtgcagga aggatggtga aattttaaca ttagctgcga agatatttaa gtttaagtaa       960
     attttactta gtttatattg aatatagtaa aaattgctcg tttttatttt ccagaggagc      1020
     catatccttt ggctccacgc cgagaagcaa caggtgctgt ggtggtaata atttcatcaa      1080
     acgtagactt cttcaacggt ccattatgga gttttataat caagaactga gcaacacgat      1140
     ccccaagttc aacttgatat ggaagtttcc catggttgat tagcataacc cccaaagttc      1200
     cttcaaaatc ttcatcgacc acgcccccca tgacgtcaat tttatgccgc aacgctaacc      1260
     cagaccttgg tttaatcaaa ccaacatggc ccaacggtaa tttaacttga atcccaatat      1320
     ccatcaatat catttcccct gctttaagta acgctccgga ttgacagtac aaatcataac      1380
     cagcagattg agggtgcaac tttgttggaa atttactttc aaaggtcttc ctaataaagt      1440
     ggaccgttct atagtcatct agaaggttaa tatttataca ttttttattt aaacttcaat      1500
     tgttagtcaa actattataa ttatcgactt atttttatat atttgaaata tgtaggaaat      1560
     caactactac attcaatcca tataatgagg agataccatc aaaacgggat accaaaaatt      1620
     gtcaggtaaa agaaagcttt ctttggcttg gaaaatcgaa gtcatagcta cgttacatga      1680
     tttaacaaat tttaattttc tttggagtgt tataggcaag aagtgaaaaa actgtgtatg      1740
     tcccattata taatcgttat ttgaaataat tataagatct tccgaatttt tatagacgcc      1800
     ctgattagaa tctacttcct ctgaccaacc aacttgttca gcttaagaga ggtaaagaaa      1860
     aaatagattt cagtttaatt ttgaaaggat ttatgggatc caggtagtat aatcagggtc      1920
     tgtgtcaatc tttgtttgca gggtattgca agctgcaacc aacgattgaa aatatttaaa      1980
     cgacaggttt gcccctgtgg tttgattctt tctgatgcag acataagcct gcccattttt      2040
     tctccaagtt tggagtttta gccaaaaccc ctgacctagc tggccctccc aatggacaat      2100
     attttgtcca ctaggatcgt cactcctttc cccttcggga gcaaaattaa gcgaaatagg      2160
     acctttgtaa gatgatgaag gcacatatgc ttcatatgct ccggagctga tgatgatgag      2220
     cttgcaggag gaatcgtagt acgagcaaca ggaacaagcg ccgttgaagg aacaggaaca      2280
     gcagaaggcg gaacactctt gactcgacct ctcttctccg ctggggactt ttctgcaatt      2340
     aatagaaata aaaatttaaa gcttatgatt acaacaaatt tccctattaa cattttaaaa      2400
     taattattga catcttaccc ttttcagcca tcttcctctt gttagcggcg gcagcagcct      2460
     tgactgtctt ctcttcagga ccagtgtaga acaagcttaa cgggtttcga cgagcggcat      2520
     ctagctcctt cttggaagca gcgtcaacct tcttcgcatc agctgcattc tcccttgctt      2580
     cccgtcgtcg tttctgctcc gtatataaat caactttttt cagtttaaca actggctcca      2640
     gtttctttga tttggttgca ggttctttgc gctttgactt aggcactgca tacaaatcat      2700
     ccacgaggtt cagccctgat agtagaaaca atttacaatt aaattaaaaa tgaacaataa      2760
     gtatatgacc taataaatca aataaaatat cttacgtttt tgcgaatgtt catttgcagg      2820
     aacaaaatca ggatcctcct ctggctcaga cggagaatcc tcgtcctctt cgtcttcatc      2880
     ctcctcctca tcagtgaaag gtccgcttgg ttcctcctca tcatcgtcta cgacgaatcc      2940
     agcgtcaaag acttcaggtt gtcgacggtg agaaagaaga aaagctcgtg cgtcctcaga      3000
     ctctcgactt cctggcttag cctcctctaa gatttttcgt gctcttgcca ctgcgtttat      3060
     ccctgctaaa atttacgtaa atattggaat ttatttaaga tttcaagttt atattttatc      3120
     aacatttgaa aattttccta aagcttgttt agtttcttaa aattatttta tttgtgtttt      3180
     aggaaaactt accctgagac attttggagt ttttaaagtt tttatttctt ctttggaaat      3240
     cctttgcacg taatgttgaa acattgacta acttgctcat tattttgcca attgttttta      3300
     tagtcttagt aatttacaaa aaaaaaattc caaaataagt acataccgta aaaatgtaat      3360
     aactccctag gggttactaa ttcaattatt tacaaaatac ggttaatagt ggtaagtggt      3420
     aattaatatt ttttacagta ttggagttga agtgatggta tgttttatta tatgtaaaca      3480
     cattcctggt attaagataa tgacgtcacg ccgagatata aaaaaagatg ttgttataca      3540
     tattttctca caagcatttt ttagaataca cacttcttga ctttgatttt ggaaattttg      3600
     gtaagttatt ttttatttat ttattatttt taaatttcca agtttaaatt tatacaatta      3660
     attctcaaaa tttgtttttt tttctccgtg cttagtgtat gagtacttca ttcggagcaa      3720
     cctaataata gttgagagat ttacatcaca aagaaaatgg tgagatcact tagacaagaa      3780
     tgtgtataaa ctgttgatag ttactgagat tgttgtttta ttttggcagg ctcctcgtat      3840
     taagacgaca acattccaat gcttgaaatg ttttaggaga ttcttaaatc gtcagcattt      3900
     tgcgtcacat ttactaaggc accgagatga aaacaagaga aaattgtgtc aatattgtac      3960
     catgtcattc aggtcgtcta aattgttaga agtacatatg aatacttatc atagatgtga      4020
     atattgtgac ttctcagcca acatttttga tcttatagag cacaatgaag ctcataaaag      4080
     aggagttata aaatccatga aatttgatca aagaggaaga gggctacgac tgaatgcttt      4140
     ccctttctct gaaattgaag cctttaaagg ctttatgaaa acttacagat ttagaaatac      4200
     acatgaggat aataatatta tttctgttag agattttttt aatagattta agtttaaaat      4260
     taatcagatt ctatttcaca atgtttcaat ttataatagc attaagtttc aaataacgct      4320
     tttgtgtaaa tttaaacgta tgcatccaag cgtggatgaa gaagaggtag aattcatgga      4380
     aacaacagaa caatatttta attcttctct taaaattatc ctcagtcccc tctacattaa      4440
     tagaatcttt tgtgacatgg ttaatgaaat cgataataat gtggaaatct tcgaacgaaa      4500
     tggcagtggt tggatattag atgaagtgaa aggctgtgat atacgaacag ctcagtttga      4560
     aatattaaag ggtggatgtt cgtgcatcat tcccagccat ctgaaaaata agaatgccat      4620
     tgtgaatccc gataataagg aaaatgattg ctttgtttca gcttttctga tctgcatgca      4680
     cggagattca gtagataaca ggcatcgtgg aagaatatct caatatgaaa aatttaaaac      4740
     tcactacgat ttctcttcgt taaagtttcc aacatcgttg aaagatatca tagcattcga      4800
     aaagcggcac aaacatatta aaattggtat taatgtgttt ggtattgatc aagaagagca      4860
     gcttaacgtt ttacgcctaa cacctcatgc aaatagcaga acgcataaaa tcgtaaacat      4920
     tctatacatt caggatgctt ttaagcaaca tgggcattac atgtctatcc tgaatttttc      4980
     tcgcctaatc aacagacagg gacatcatcg aaaatttgtt tgctacaatt gtttgaatac      5040
     tttcggagat gaaaagcgtc ttgattcaca tcagcagttg tgttttgagt ttaaaactca      5100
     aaaggtttct gttccttcag tcgttgatgg aaaaattcca ttctgctctt ttgagagtaa      5160
     aaaacttagt aataaactaa agtgtaactt tgtgatgtat ggagattttg aagcaatgct      5220
     cacagacgat aataccagta cgacctcaat agataaacac aaaatttcag gatataatct      5280
     tgcagtaatt ggcccaaata agaaactggt tcatatatcg aaatatcgtg gtccaaatag      5340
     cattgacaaa tttatagatg aagtgaatct acaagctagc ttttgcatac aaaggaacaa      5400
     aatccatatc gctatgaaac aactttctct agaggaagaa tatgattttt ctatggcaga      5460
     ttcctgccac atttgtgagc atgattttga tcaccaatct ataaaagttc gagatcatga      5520
     tcacaatact ggattattta gaggagctgc tcatagagaa tgtaatgctt cgtatattca      5580
     aaaagtcaaa atccctgtac ttatgcataa ttttagaaat tatgactctc acctgctgtt      5640
     aagttcagca acgaaatttg gttctgggaa tacgttcgtt atccctcaaa actctgaaaa      5700
     atttataggc attatttgtg ataagttcat gttcatagat tctttcatgc atctgcccaa      5760
     atctttagat actcttgtaa caaaccttca tgcaaaaccc gaaggctttg atgacaagtt      5820
     tggtataatg atacaacatt tttcaaaaga acgggctgta aaactctcaa ggaaaggtgt      5880
     ctatccatat tcttatttca gttcttggga taaatttaag gaaaccaaat ttcccgatat      5940
     ttcagagttt tataacaccc tcacttgtga agggatttca caagaggatt atgattttgg      6000
     taagtcagtg tttgaaaccg aatgcactga cctgggttcg taccacgaca tatatttaac      6060
     aacagatgta cttctgttgg catgcgtttt tgaaagctac agggatatgg caatttctaa      6120
     ctttaagctt gacccttgtc actattttag tctcccaggc ttcagctggg atgctgctct      6180
     tctgagtaca aaagttaagc tagaacttgt tactgatcaa gacatgtaca atactataga      6240
     gtctggcatt agaggaggag tatctatgat atctcataga tattctgaag cttacaacaa      6300
     gtatatggaa gattatgaag aaggagtcaa ggaagactct tttcttcttt atattgataa      6360
     aaacaacttg tacggtgagg cgcttcagca gcctttgcct gtttctgatt ttcaatggga      6420
     aagtcaagag ttcattgata atttaagtat agatgatatt ttggcatggg gtgatgagga      6480
     tgaaatcggt agaattttgg ttgtcaattt agaatatccc tgtgagctcc acctgttgag      6540
     cgagcacaac gaatattcac tagctccgga gaaaattaca atttccatga atcaactctc      6600
     gaagcatcag cgggagcttt taacttccta taacattaaa tattcagaaa agcagaaaaa      6660
     attagttcct catttaggat ctagaaaaat gtatccagtg cattatagaa atctcaaata      6720
     ttatttggag aagggaatgg tattaacaaa gattcataag ataattaaat ttgttcaaag      6780
     gccctggctt aaagattttg taaacctttg ttgtgattta cgacgaaaag ctacaaacaa      6840
     atctgagcaa gactttttca agctaatagt taacgcaatt tttggacgta gcatgatgaa      6900
     tgttaggaat cagcaaaatg tatatatagt taatagtatt gaaacagcaa aatattattc      6960
     caggctttcg aacttcagaa aatttgagat tctttctcca aacttggtac ttgttttcat      7020
     gagtaaacct agtattgtat tggataagcc aatatataca gcgttttcgg ttttagatct      7080
     cagcaagttg tttatgcagg tttggcatta tgacaagatc aaaaaatggt atggaattaa      7140
     agccaggttc ctttttacag atacggacag cttagcctat caaattaaaa ccgctgatct      7200
     ttatgctgat ttaagactgg tgaaaaatga ttttgacttt agtgattttg accacactca      7260
     tccactttat tctacagaaa ataaaaaagt gattggtaaa atgaaggacg agagtaacgg      7320
     aaaaatcatg tatagttttg tgggtgtttc tccaaaaatg tattcctttg caggcaagaa      7380
     tatccataag attgctatga aaggagtcaa acaatcttta gtacgaaaac atgtaactca      7440
     taaagctttt atggagactt tgtttgagca aacaaaatat atgtgcagaa tgaatttgat      7500
     tcgttcaaag aatcataaac taacaactgc aaattataca aaagtagctt tgcatagttt      7560
     tgattcgaaa cgttttattt tacccgatgg aattagtaca cttgctcaca atcatttttt      7620
     gattcctacg tacaacaagt aaaatattta aaattaacaa gtaccaatta tttatttagt      7680
     gaattattgt acagtttaaa cataacaata aaatgattac aattacaaat atataaataa      7740
     taaataaaat atgtacagtt taaggtttga aaacttttgt tattccctta atttggcatc      7800
     tacaaatagg acataggtct tgggtagtag agcatggaaa gcaggagcaa atgtgacaac      7860
     atggagtgaa catgtaatta gcttcttcga gtttacacac cgaacacaga aatgtttcca      7920
     tcaggctatg aaggagtgta agagtagcat tttcttgatt ttcaccattc tcatcctttg      7980
     acgaatttat ttgtttgcat agactctgta ataaaaaaat aataaaacaa taaaataatt      8040
     attttgataa aactgaaaat atataaaagc attacaaaat tacattatat ttttggtaag      8100
     tataactttg gtctaaatcc ttcgataaaa tagtctgcaa tttaggtttg tgcaaagaga      8160
     ggaatggaca gtcacttgaa tgaatagagt gttcaatcca gggatcatca cttggcagcc      8220
     aattatggat tattattcca caataataac aagaaagccg atctccatat ccagtagagt      8280
     aaaatcctgc ttcactaaaa tttttgggat tttgcttaca ttttccggtc cagtttttga      8340
     atgttgctaa acgatcacta tttagacaca tatctttgtt atcaatatcg tatggtttat      8400
     agaccagagt tggaaaagtt tcatcttgga gaaccatgtt tagtatttaa aataaatacg      8460
     gaaaacctta tctgattaga actgaatcgc atgagctctg acactacaat gaacatatca      8520
     ctaatatgtc gtactacttt agcatagttt attaaattat taaaacaatt tttttacaca      8580
     aaccagacct caaagttaag aaggaatttt tttgttgttg ttgttgttca aaaacgaata      8640
     cctcagtcaa aagccattct atcatgtggg aaaccatatg aagtcttctg tcttgatgta      8700
     acgtccttag tgttgcgagg tctttgggga attcccgttg gagtacgata tgggtcaaag      8760
     gttttattca gagcatcatt ttggtttaac ggttcccatg cactgaagct cgacagctta      8820
     tgagcactga gcgtagctgt ttgttttaga ggaatagaat ctaaggtacc cataagatca      8880
     tttctcacta cagttgaaaa tagagcggca gggacattta acattttaca cactctcagg      8940
     aatctgttga ttccgtttgg ggatgtggtc catttcaaat ctctaatgga gtaactcatt      9000
     aaatccgaaa tgttagagtc aggttcaaac tcacttcccc agaaagttac tcgtcctgat      9060
     ttatcccatt ttatcatttc aggatgacac tttaaaaacc cgagcaaatt gtgagcttta      9120
     ttcatttgag tggtaggaaa ttctttcagc atttttatat ctgattcaga taacgtgaat      9180
     ttttcagggg aaccaactgg agtagactct gtgctagaag gagttacagg tggaggagtt      9240
     tcattagtgg agatagtatt actttttcct atggatgatt tatcttcacc agaaaccatt      9300
     ctaacggaaa taggtttatc taaaatgtct ttcaactgat tatttacacg tttcattaaa      9360
     ctactgtaca attggacttt aatatcctcc ggaattaagg atcccaaaac tgatgtagct      9420
     tcctgatcct tgtccgtaaa aaagtgagtt ttagcatgct ccattgtgtt ggtctttttt      9480
     agaagctggg aatactcgtc ttcactaaca actctcattt ttttcgacat tttaatattt      9540
     agtttttaaa accctaagtg tgaactaatc gctcgtcctg ctattgcacc aagagctgaa      9600
     agcacgggtg ttattaagaa tggaagaaaa cctcctttct gtactaaatg ttccttcttg      9660
     cttttatgtg attttgactt ttttgataat tccctgattt gatctttgtg tttgtgtaat      9720
     ttctttcttg tttcctcgtc tacttgaaaa cgaccttcta atatatttac agcaatttca      9780
     cttagtgctc gtatctcgtc cggggatgct tcctgaatga tcttcttcct cttcaacccc      9840
     ctgcatgtca caagtttctt cagaaacgag aggttccgat ttaggcagtg actcatttct      9900
     catgtagctt gataaatcgt tgagaatttt taatgcttta gcatgtgagc attgcgcgtt      9960
     gtcaatatgg aatgagagcg gacattcaat agaatcttgt ataggcagat tttcagaaca     10020
     gtcctctgta ttttcaacca ataaatcctc tgtgttaata acagtccagt taaatcccaa     10080
     attcttcaaa acgtttgcct tttgtagtcc tttagtgtat actgtagcat catttaaagt     10140
     agacaaatac gccagaacac tattaaactt gtcccgccca gcaaaccagt aaattttatg     10200
     aagtttattt tcacaatact tcactatacg cttttcatgt acagtaagag agttgaaatg     10260
     acaggggggt ttaataaaga aatgtttctg aaaataagtg gggtcttccg tacacttaat     10320
     attacaaatt gttatttctt taaacacaaa tcctcttgga agtaaaaatc cttcaaattc     10380
     aataacgtac ttcattttgg tatgtacacg tattttggct cgtctgaaaa aattccctgg     10440
     agcactctgg ttctgtcgtt acacaaaggg tgtagattga ggaataagta cgagtatggt     10500
     tgctcagttg ctcttttata ggcatcagat agaaaattcg tattatgtgg aaaaagctgt     10560
     ttacctaaat attgtatttg agatgcgaac gtaggagacc tcataattac catataatga     10620
     caatttagtc gtatatcgcg tccgaatttt ccttgaggat atagattttg tgttaataga     10680
     attactgata ctgaattgtg atgaattcct cttgtgaata acgtttgaat tttttcattc     10740
     gtcagcacat ccttcatttg atcatcaatt attagcaaag ttgggtgttt gttactaaat     10800
     tcagacatat caaaatccaa tccttgtcta aattcaatcc gattattatg tttagccata     10860
     tcatcataag caggttgatt ttctgtgtaa gaaacaatta tccggcttgg gcaaggctca     10920
     attaattgtg catcatgagt cagtaatttt ttaacaaact ctgactttcc tgattgagaa     10980
     actccggaaa taattaacga gaagggatgt aaaagcttta gagaatgacc ttcaatttcc     11040
     attctgctgt tttcgaaaat gcaacgttac tatgcactgt cctttttcaa actgaagttc     11100
     atcgccaaat tcgtcacata gaagaatttc aattgtgtca aattcaagtt gacttagtgg     11160
     taaataataa ggacgaaatt cgtgagtcac ggcttcattt ttctttgaac ttacattaac     11220
     cattcttagt aggggacaaa gacagtctcc tacaatttgt cttttaatta tatcactata     11280
     tataaaaata tgatatattc ccctagatag gttkggggtg ttcgttgcta tcctactaac     11340
     gtcaaatcga cacgtatcgt caagggtata taagtcaaac cccaacatgt tagctaaaca     11400
     cacatttata tagaatgttc cacaaccctt taaaaaatgt actctatttg tttcagggtt     11460
     atatgcaaaa cttgcataaa cttcgtcatt aagtactaag cagagattga tttcttcaac     11520
     aagtgactgt acatcttggt attgtttatt tttaaccatg cgatgaccaa tattgttttc     11580
     tggatcattt ggaaatagta tttttcttgc gtcatcttgc tgaaacgttt tcaaagaatt     11640
     tacgtaagta aactctgtaa tagctacttc atattcgtta gatataaaat tcaaacgttt     11700
     tggtagttta gttttatata acgacatcct gttattagga tagtaccgtg ggctaacatt     11760
     agaaggtagg tgtaggtaaa atgacatgat ttttcgttta taagtaaaga cttttcttga     11820
     taacttccat tattcaactg cttagcgtac gaagcttcat acagttttta tcctttttcc     11880
     agggcactac taatagtcta aaaaatgaag catgttcatg tatttcacca cgaacactat     11940
     caccgtgtgt tagagaatca aattggtaaa ggcatacccg tgtttagagg ttatagacag     12000
     aaaggaggtg gtctaggaag tattctggga tttatcggtc gatatggatt accgctcatt     12060
     accaaatata ttctacctca tgcagcgcct gcaattatga gtacagtatc tgatattaca     12120
     aatggtcaat caattaaaac agccctaaaa tccaatgcta ttaaaatggc taaaaaggtt     12180
     ggaaaatcta ttcttaaacc ccaagcagga gctggattag gttctagaaa acgaaaagct     12240
     ttactaggtg caacgtcaga agagtgtaag gtgttgcacg aatcacatca ctcgtccaac     12300
     ccaaagaaat ctaaagcttc atccgtaaaa tcgggcaaca agagaaaaac accaactgca     12360
     cctaagaaaa gaagatcaat ttttagtaaa cgggatatat ttggataatg gcattaatta     12420
     acgaattctc tcaaccgtct attaggggac aagtagagtt atttggtctt ccacctacag     12480
     acacaacggt tgaatccagt ttctacgcag aatataaacc tgttgtaaat atacaagata     12540
     acgatgcaaa aattgatttt cgaattactg gaaatgcatc gcaatatctt gacttgtttg     12600
     accatttctg ttatcttaga gtaaaagttg ttgcatcgga tggaaaagat ttaccagcag     12660
     cagcagaggt tagtacttct aacttattta tgcattccct gttttcgcaa tgtgatgtta     12720
     gtataaataa tcaacttgtt tcaaccagca ataactgtta catgtacaaa gcttatttag     12780
     aaacagtttt gacatacgga actgattaca taaattccca agcgacttgt ccactattct     12840
     acaaagacac tgataatgga tcgctgaaag atactaacac aggctacaaa aaaagaaagc     12900
     aatggattca agcctcgaaa ccggtggaat taattgataa attaaaattt gaccttgctt     12960
     atcaacatcg atatattttg aatgacacaa cagttaccat tagcctagcc agagctgttg     13020
     aaacgttttc ccttttgtgc ggggcacttg cttcaggtag tcccgcgatt aatcccaaag     13080
     taaaattcct tgatgcgagt ctatttgtta gaaaacatgt tttatatcct agtattgtct     13140
     tgtctcacca aaagttactt gaaggagggc atagtgctcg ataccccttc aaaaaatcag     13200
     aagtaaaatt tttttcaatt ccaaaatcgt cacaatcctt tatcgaagaa aacgttttcc     13260
     ttggtacaat cccaactaga attgtcatct gtctaattcc gagtaagggt tttgttgggg     13320
     actatgacgt taatccttat gtattccccc attacaatct taattatata tcattaagtg     13380
     tgaacaatgt tccctatcct attaaaggtt tacaacttga ttttgacagt gatattaagt     13440
     tattaccata ttatttactg tattgttctc ttggaacagc aggacaagat caaggtttga     13500
     cttttgacag agaagaattt tgtagtggtc agacattttt tggatttgac attaatcagt     13560
     ctactgggtc agattctgca ctacagttgg aaaaaaacgg atgtgtaaga atcgaattaa     13620
     aatttgctaa ggcactgcct gaagcggtaa attgtttagt ttattctgaa cattttaaaa     13680
     tcttggagat tgacagattt agacaaattt ctgtacaata atgaattctt tacaacttcg     13740
     atatgcctta atcaactcta tgaacctttt catagctgtt tgtgccaaag atcagttaga     13800
     tagtattaat tcaaaaacgt ttgcaattat tagtaataac caatcttcaa acgaggcagg     13860
     gatgcactgg ttagctttct acaaagaaac tgaatcgtct gttctagaat tttttgatag     13920
     ctttggaatg cctttaggtt tttatggaaa agaatttgaa gattttgcat taagaaacga     13980
     gaaaaaggtt agacagtcat catctcaatt tcagtcaaat tccagcaatc tgtgtggagg     14040
     gtattgctta tacttcttaa ttaatcgaaa ccgtggcttg tcctacgata aaattttaaa     14100
     taaattcaac tcagaaaata ctcttgtgaa tgataaaata gtatcaaact ttgtaaaaac     14160
     aaacctttac tttccaaaat gttccaaatg tggaatcgaa tgtagcggaa aatgtgcaaa     14220
     tagtctcagc gatatttgta ttcagaaaaa tagacattgc gttcggatat ttcaaacaat     14280
     tcaatcatga aaacagacaa acttttgaaa gaaatctact ttaatccaaa acatattgga     14340
     agttttggtg gaccacatcg gttatctgca gcaacgggag tatccctgaa ggatgctgta     14400
     acttttctac agcattatga aacatataca acaaacaaat ctgtgaagca taaatttttt     14460
     agacgtaaaa tgacttccca cgaagttgat tattgttggc aagctgattt aatagatata     14520
     tcaaaatatt caagattaaa caagggaaca aaatatttat taacagtaat agatactcta     14580
     agtagatttg cttttgttaa acctctaaga aaaaaagatg gaaaatcagt aacagagtct     14640
     ttcaaggaat taatcctaaa ctcaaatcgg aaaccaaaat tcatacaaac agacgaagga     14700
     aaagaatttt ttaacaaaca attttataat ttattaaagg aacaagacat aaaattattt     14760
     cataaccatt cgccacttaa agcagcaatg gtcgaaaggt ttaatagaac tctgatgacg     14820
     agattacaaa aagttttcac atatagaaaa acaaatgtgt attatgatat tttacaagaa     14880
     gtagtagatt catataatga gagcaaacac agaattattg aatgttcgcc taggtctgtc     14940
     aacaagtata atcagatgga tgtttggttt cggagtaata aagatgttct tatgatgaag     15000
     catcaaaaac cgaaattaaa atcaggagat tttgttagaa ttaaaataaa taaagcgctt     15060
     ttcaggaaag gctattcccc tacttttaca gacaagattt acaaaattag cgaagctcat     15120
     aacagcaaac ctatgacata ttccataatg gataattcag gggaaaaagt gttaggaatt     15180
     ttctatcctc aagaactatc taaagtgtta acctaagcta tttacatgca aaattatttg     15240
     aaaaatgaaa gcggtcccca tttccgctgg tgcggaaatg gggaccgaga ttcatca        15297
//
ID   Polinton-2_LMi repbase;    DNA;    INV; 7239 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 19.11, Created)
DT   12-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7239
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3021-3021 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           2333..1632
FT                 /product="Polinton-2_LMi_1p"
FT                 /translation="MRFKKHARQLPIAPITEKNDGTSAARSRKHGDLFPDT
FT                 IRCIISGPSNCGKTNVIINLLVHENGLSFKNVYVFSKSLQQYKYKFLAQVI
FT                 DGIGDIGYFPFTSNDEVIPPDKALPHSIFIFDDIVCDKQDNMRAYFSMGRH
FT                 YGVDCFYLCQTYSKIPKQLIRDNANIIVLFKQDERNMRHVFSDHVNPDMTF
FT                 NAFIDLCKEIWSANAHNFLVISKDDDLYNGRYRCNFDKYICINV"
FT   CDS           4626..5849
FT                 /product="Polinton-2_LMi_3p"
FT                 /translation="MSYLLSVREKIHADNSVTRFQYRRYQPYSRPNFAYND
FT                 KISIAINDKDLYLLPCESHLYIHGRLLKADGSGVATDIHLNKNCMLHLFSE
FT                 IQYHLNNKQIEDVRNPGIVTLMKGYASFTPSEAKVLQNAGWGEKEELKEFV
FT                 DSDGSFSFCIPLSMALGFAEDYRKIILNAKHELVLVRSAHDANSIIADAVD
FT                 TKSKIVLDNIYWDIPEIQVSEKEKISLMKIIKNDLRLNLAFCHWELTECIA
FT                 PELDKWTWQVKSKPGLETARYVIIAFQTDRKAMNADCSIFDAIDLTKLEIK
FT                 LNSSKYPYENYSVNFTTKNTALAYAMYSKFQSVYYETRGKIANPLMSHKEF
FT                 QKCPIHVFDCSRQEENLISSNSDMRIEMELQKPFPKNTNAYCLVIHDSVIE
FT                 MIPSTSEVSRMDSA"
FT   CDS           join(6280..6540,6528..6932)
FT                 /product="Polinton-2_LMi_4p"
FT                 /translation="MRSSRIPKNLQTDLGKEFYNSNFTKLMQKYKINHYST
FT                 YSVMKACVVERFNRTLKGMLFKRFTAKGSYKWIDGVQDLVSQYNNRNIEPK
FT                 HRTIKMKPVDVKDNSLLSTVYSKIKMVDPRKPKLKVGDFVRISKHKSVFEK
FT                 GFTPNWSMEIFKIIDVRETNPRTYFLEDYLSRPVAGGFYCEELQKTKYPTS
FT                 YLVEKIIRKKRNRALVKWLGFDSTHNSWIATS"
FT   CDS           join(2382..2828,2804..3550,3514..4353)
FT                 /product="Polinton-2_LMi_2p"
FT                 /translation="MFEVARRKRGGSLLNSAINRLPVELHIPGYSYCGPGT
FT                 KLAKRLQRGDVGINKLDSACKEHDIAYAKHPNSLSDRHRADLILADKAVQR
FT                 IKASDAKLSEKIAALAVAGAMKAKVKLGMGINKKKNMKRNKKIGGNEXKGL
FT                 IKKFALVLSQKIRSGLKSMKPGTNFWGAVKAAHKIASDAAPKAKKSTIKER
FT                 ILPLPKRGGFLPLIPIFAALSALGGLAGGAAGIAKAVVDAKNARKELSELQ
FT                 RHNQTMEAIALRKGKGLYLGPYRKNGFGLYVGKKKKFSLNSLPKRALTNID
FT                 LERYARKLEIPHFRGVFMRDTLPNKPKRYESAIVNLQTDSEPGSHWVSFKK
FT                 RGNDVYYFDSFGNLPPPLEIVRYFKNCTIKYNYNTFQSPKSHRCGHLCLKF
FT                 INSGVWSSLFKVYKFRINYCEFQYIMDVGEDGMTFSLSGKNSIITSTFNST
FT                 INLSHHHSYEIALLNLFSYNSIPNITSKNNNFYFYNYIGNNEILDKVTIKP
FT                 GTYELKDIFSSLLMEIELYNAKFVNDDAPEDDKRKFKVELRISYHKPYKRC
FT                 KIWCNVAVDFTLDNNIGSVLGFENMYIDKETSTLAVHGVNIQNVNVLCIDC
FT                 NISAGSFHNGAPMHTLHQFWPAVPPGYKIVESPNSPIYMPVVVQHIKELSI
FT                 SIRDQDGNLVDFDGEEITVRLHLRKKARW"
XX
SQ   Sequence 7239 BP; 2317 A; 1425 C; 1426 G; 2070 T; 1 other;
     aggtacgcta tggggcttct ggacaaattg ggggcttctg gacagcctgg ggggttcaga        60
     agagaatgtg aacctcctga ccgtctggtt gcctacctcg caggggccat acaacaatat       120
     ggcggacata aacaagatgg cggacataaa caagaaacaa tatggcggac ataaacaaat       180
     ggcggacaaa aacaagatgg cggacataaa acaatatggc ggacataaac aacagatggc       240
     ggacacaaac aacaagatgg cggacatatg cgggaagatc attaatatat atataaactc       300
     aagtttattc tgtcatgaca gcttccaaga tcgtaagatg acattgcatt ccctcaacta       360
     gtactttcga gtacaacctc tgatttcaag caataatcga agcctctcga agttcttctt       420
     caatagcaat tatttcatta tcgtgagctg tattcccagc tcccttggac gctagtaaca       480
     ggagcaatcg ttccaccagt tcattcggat cattccaatg cacataactc acatgttcag       540
     tattagtttt ccaatcttta actttgagat cattttcgtt ctcaccatat ccgtccagcc       600
     ccattccttc tttagccaac acgccttctt tttctaacaa ggggcgaatt atgttagtat       660
     acttgtaacc ctcgttgaca tttattggtc tgcgggaatt ataactttgt ctatatgcat       720
     tggtggcaaa tagtatttta gcataattgc gaagatccat agctgtataa ctgttttact       780
     gggtttgttt ttaaacaaga gattatacaa tcctttcgtt ccagaatatt ttactttatg       840
     aattattaaa tcatctccat caactcgtac tggggaattt ccaatcgccc acgtctttaa       900
     ttcatcatca aacctaatgc catatatagg atccgctgtt tttctgtctt ggggtttatg       960
     aaaaaataat ttcgccagtc ttccttcatt ctcgtcagca ctatcatcat tatcccctcc      1020
     tccttcttcc tccaaatctt cttcttcttt tgttcttctt ttgcaactag agctgtgtca      1080
     tctggtttta tgaatgcacg tttctcatca atgtcttcaa gttcattctt tttatccaca      1140
     actccaggct tgagctggtg ggtctcttga atcaatctct gtagcggttg agttactggt      1200
     ttcattactt tgttcagtac actctcagct tctgcctcac gtctttgtag taaagcaaat      1260
     ttcttgcgta tagcgcgtcg agcttccagt actcgcttgt taagtttcat cttctcattt      1320
     aaagcgagcg tgcagtggcg tggtctcacg tcttttttct gtctcacgtc tttgtagtat      1380
     atccaatttc ttgcgtttag cacgtcgagc tttcggtacg cgattttttt atgatttatc      1440
     ttttcatcaa tgcaattgtc ctgcaacatg acgcagctgg attataaacg catatatata      1500
     tcacttcatc tatgctggag gaccatccgc taagaggtta cccgagctgt ctgtagcgcg      1560
     tcctctacaa cgcgcttggc tagtagcgca cgcacacaca cacacacaca caccgcacaa      1620
     cgcaactcct atacattaat acaaatatac ttatcaaaat tacagcgata acgtccatta      1680
     tataaatcat catctttact tataactagg aaattatgcg cgttagcact ccatatctct      1740
     ttacacaaat caatgaatgc attaaatgtc atatcaggat taacgtgatc actgaaaacg      1800
     tgtcgcatat tacgttcatc ttgtttgaag agaacaataa tattagcatt atctctaatt      1860
     aactgtttcg gaattttgct gtaagtctga cataagtaaa aacagtctac gccataatgg      1920
     cgacccattg aaaagtatgc tctcatatta tcctgtttat cgcaaacaat gtcatcaaaa      1980
     atgaaaatgg agtgaggaag tgctttatcc ggcggtatta cttcatcatt actcgtgaat      2040
     gggaaatatc caatatctcc aatgccgtca atcacttgag ctagaaattt gtatttatat      2100
     tgctgcaaag atttggagaa tacataaacg ttcttaaatg acagaccatt ctcatgcaca      2160
     agaagattaa ttatcacatt cgtttttcca cagtttgaag ggccggatat aatacatcta      2220
     attgtatctg gaaatagatc tccatgtttg cgactccgtg cagctgatgt cccatcattc      2280
     ttttcggtaa taggagcaat gggaagttgg cgtgcgtgct tcttgaagcg catcttgaag      2340
     ttaactagtg agtcttatat aagaagagta acggtattca tatgttcgaa gttgcacgaa      2400
     gaaagcgtgg tggatcactt cttaatagcg caatcaatcg cctacctgtc gaactacata      2460
     tacctggtta ctcttattgc ggaccaggca caaagttagc aaaacgactg caaagaggtg      2520
     acgttggaat caataaacta gactcagctt gcaaagaaca cgatattgcg tatgcaaaac      2580
     acccaaacag tttgtctgac aggcatagag cggacttgat tctagcagat aaagcagtac      2640
     aaagaataaa ggcctcagac gctaagctca gtgaaaaaat agccgcccta gcggtggctg      2700
     gtgcaatgaa ggccaaagtc aaactcggta tgggtattaa taaaaagaag aatatgaaga      2760
     ggaataaaaa gattggaggt aatgagmtga aaggattaat taaaaaattc gctctggtct      2820
     taagtcaatg aaacctggca ctaatttctg gggagcagtg aaagcggctc ataaaattgc      2880
     ttcggatgca gctccaaaag caaaaaaatc tactattaaa gaacgcatat taccacttcc      2940
     caagagaggt ggctttttgc ccctcattcc aattttcgca gctttatcag cacttggtgg      3000
     actggcagga ggtgcagcag gcattgccaa ggcagttgta gatgcaaaaa atgctcgcaa      3060
     agagctgtcg gagttgcaac gacataacca aactatggag gccatagcgc ttcgcaaagg      3120
     caaggggctg tatttagggc cttataggaa gaatggtttc gggctatatg tggggaagaa      3180
     aaaaaaattc tcattaaaca gccttcccaa aagagcgctt acaaacatcg acttagaacg      3240
     ctatgctaga aaacttgaaa taccccactt tcgaggtgtc ttcatgagag acactttacc      3300
     aaataaacct aaaagatatg agagtgcaat tgtcaacctc cagacagata gtgagcctgg      3360
     ctcccactgg gtttctttta agaagagggg aaatgatgtc tactattttg atagtttcgg      3420
     caatttaccg cctcctctag aaatagtcag gtatttcaaa aattgtacta ttaagtacaa      3480
     ctacaatacg tttcagtcgc ctaagagcca taggtgtggt catctttgtt taaagtttat      3540
     aaattccgga taaattactg cgaattccaa tacataatgg atgttggcga ggacggcatg      3600
     acgtttagcc tgtcgggtaa aaactcgatt ataacctcca catttaattc cacaattaat      3660
     ttgtctcatc atcattccta cgaaattgca ttactcaact tattttcata caattctata      3720
     ccgaacatta cgtctaaaaa caataatttt tacttctata actacattgg taataatgaa      3780
     attctagaca aagttactat aaaacctgga acgtacgaac tcaaagatat attttcatct      3840
     ttactaatgg agattgagtt gtacaacgcc aagtttgtca atgatgatgc gcccgaggat      3900
     gataaacgga aattcaaagt agaactgaga atctcttacc ataaacctta caaacgatgt      3960
     aaaatctggt gtaatgtagc tgttgatttt acactggata ataatattgg ctcagtccta      4020
     ggatttgaga atatgtatat tgacaaggaa acttcaacgc tagctgtgca cggtgtaaat      4080
     attcagaacg ttaatgtgct atgcatagat tgcaacattt cggctgggtc cttccacaac      4140
     ggcgctccta tgcacacatt acatcagttc tggcccgcag tcccacctgg atataagatt      4200
     gtggaatcac caaattcacc catttacatg ccagttgttg tacaacacat taaagagtta      4260
     agtatatcta ttagagatca ggacgggaat ctagttgatt tcgacgggga ggaaataact      4320
     gtgagattgc atttaagaaa aaaagcgaga tggtaaacct ctacagtcaa caacttacgc      4380
     atgatgagat gaatgtatct acaaatagaa aataaaaaag aaaaagagtc aaatgaagaa      4440
     gaaagaggct atatataaaa agagacaagt gaagcagatt aaaaagaaga agaagattga      4500
     tgtaaaaagt gttgactcca tacaatcgag aactactatc gagagtgggc tatagtgtgc      4560
     tgtaaatacc aacgtcactc tccgtgaact ctcattcaaa attgctacta gatataagga      4620
     agacaatgtc ttatttactg agtgtgagag agaagattca cgccgataac tccgttaccc      4680
     gatttcaata tcgtagatac caaccgtaca gtcgaccaaa tttcgcttac aatgataaaa      4740
     tatcaatagc gataaacgat aaagacttgt acctgttgcc ttgtgagagc catctttata      4800
     ttcacggtcg tctactaaag gcggatggat cgggagtggc tactgatatt catttaaaca      4860
     aaaattgtat gcttcacttg ttttctgaaa ttcaatatca tttgaataac aagcaaatag      4920
     aagatgtgcg caatcctgga attgtaacgc tgatgaaggg gtatgcctca ttcacaccga      4980
     gcgaagctaa agtattgcaa aatgcaggat ggggggagaa agaggaacta aaagaatttg      5040
     ttgactccga tgggagtttc agcttctgca ttccactgag catggcactc ggcttcgctg      5100
     aggattacag gaagattatt ttaaacgcta aacatgaact tgtgttggtt cgtagcgcac      5160
     atgatgcaaa tagcattatc gcagatgctg tcgacactaa gtcgaaaatt gtgcttgata      5220
     atatttactg ggatatacct gaaattcaag tgtctgaaaa agagaaaata tcattaatga      5280
     aaatcataaa aaatgatcta aggctgaatt tggcattctg ccactgggaa ctaactgaat      5340
     gcatcgcgcc ggaacttgat aaatggacgt ggcaagtaaa gagcaagccg ggtctcgaaa      5400
     ccgctcgata cgtaattatc gcatttcaaa cagacaggaa agccatgaac gctgattgta      5460
     gtatattcga cgccatagat ttgacaaaat tagagataaa actgaactca tcaaaatatc      5520
     cctacgagaa ctactcggtt aactttacca cgaagaatac ggcgctagcg tatgccatgt      5580
     atagcaaatt tcagtctgtg tattatgaga caagaggaaa aattgcaaat cctctcatga      5640
     gtcataaaga gtttcagaaa tgtccaattc atgtctttga ttgctcacgg caagaagaaa      5700
     atctgatatc ttctaactct gatatgcgaa ttgaaatgga gctacaaaaa ccatttccaa      5760
     agaatacaaa tgcatactgt ctggttattc acgactctgt tattgaaatg ataccatcaa      5820
     ccagcgaggt ttcacggatg gatagcgcat aataagagaa acatgtacac gtcatatttg      5880
     attgccaagg attccgcgtc gtaaataatc aatttattcc gaaggatgtt gcctttcgga      5940
     tgttgagcaa cgagatcaaa atgtaaaatt actgcataaa tggtggattc atatttcact      6000
     actaataata ataatgtatc tttttaatca ttttttatat ttccaccttc ctgtatagcg      6060
     ccgctcgcac gcaaaattta tcccaggaga agcatcatcg tgaaaggaat cgatgattta      6120
     catcaagctg atttaattga tctcattgca tatcacaaat acaattcagg gtataaatat      6180
     ttactagcag tgattgatgt ctattctaaa tacgcttggg ttgctcctct gaagaccaaa      6240
     tcatctgacg aggtcactaa tgcactcaga aaaatatata tgagaagtag taggatacca      6300
     aaaaatttgc aaactgactt gggtaaagag ttttacaata gtaatttcac aaagttgatg      6360
     cagaaatata agattaacca ttactcaacg tattctgtaa tgaaagcttg cgtggtcgaa      6420
     cgattcaata gaactcttaa aggcatgttg tttaaacgtt tcacggcaaa gggttcctac      6480
     aaatggattg atggagtgca agatctcgta agtcaatata acaatagaaa catagaacca      6540
     taaaaatgaa accagttgat gtaaaggaca atagtctttt atctacagtg tacagcaaaa      6600
     tcaagatggt ggatccgcga aaacccaagc tgaaagtcgg tgattttgtt agaattagca      6660
     aacacaagtc tgttttcgaa aaaggattta caccaaattg gtctatggaa atatttaaaa      6720
     ttatagatgt gcgggagact aatccacgaa catactttct cgaggattac ctgtcacgac      6780
     ccgttgcagg aggtttctac tgtgaagaac tacaaaagac gaaatatcct acgtcatact      6840
     tagtcgaaaa aatcattaga aaaaagagaa atagagcatt agtgaaatgg cttggatttg      6900
     acagcactca caattcgtgg attgctactt catgacgaag gtcataagat gcaggatggt      6960
     cctccagcaa attgaatgtc tcgcgacatg ctcgcagcgt tagtatctct tctgaacccc      7020
     ccatggaggc ggcatatggg cgcggcctca gtttgaattc gtaccgatgc caattaattt      7080
     ttttgatgac tcagcggtct agcctcgtac cacacttatg taatatgata ccctcgtgac      7140
     gtcatcagtt tgatcgcaat gttgcaatgc gcatgcgcgg ctgaggttca cattctcttc      7200
     tgaacccccc atggaggcgg catatgggcg cggccgcct                             7239
//
ID   Polinton-2_NVi repbase;    DNA;    INV; 8996 BP.
XX
AC   .
XX
DT   14-APR-2009 (Rel. 14.04, Created)
DT   14-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8996
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 792-792 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           964..1929
FT                 /product="Polinton-2_NVi_1p"
FT                 /translation="MEHAKKMVLVPHENVERLQSVLANGVRDNNVGSILKT
FT                 VQTPGNVMTRLDAEMSNILNSSTCKSEREKWSQYRSVLQRYLQFKDVDSYA
FT                 KVMKKEEKDKEQRQMKKKNDNDYDKGADDNYNDDDNDIQRVEEEDRIDASI
FT                 IESVPPKYRRKAGHVLRKLRVSGNITWDANGGVTIGGVRIHHANMIDLIND
FT                 TMRNRKCPPPLGHTQFAVALRESFIPREFIGNKRVWKNMMAGTSPGNSTPV
FT                 PPGGASGVIPRRVLTPEGINRLFRTPSPRRAESASRANSSAIDSSEADKSS
FT                 SGTVAARVLKRKKTVAGQASAKKSSSIHF*"
FT   CDS           2522..3622
FT                 /product="Polinton-2_NVi_2p"
FT                 /translation="XTFITHLHTQQRTPVLKNFFKLHGQEKKWKKGEKEKF
FT                 HRESVVEWLESQDAYNLHRPVRRRFARRSYNVRNLDDVWEADLMDLRSLKT
FT                 YNDGYSYILTVIDVVSKFSWLEXIKEKTSRNVAEAFSRVLSRSNGRQPICL
FT                 QTDKGKEFIGRETQQVLRDNDIVHRVARSPDTKAAIAERLIRTVKERIWRY
FT                 FTHKNTRRYIDVLQNIIAAYNHSKHSATKMTPASVTVYNVAKARENLQRRY
FT                 DKNEHKVMRPKFKVGELVRVSRARSVFDKGYERGWTLELFKVARISLTRQP
FT                 PVYHLQDLSGEDIDGCFYAEELSRVRKDLEGASFEIESILRSRGKGRSKEY
FT                 FVSWKGYPEKFNSWVKASQLSQI*"
FT   CDS           7764..8531
FT                 /product="Polinton-2_NVi_4p"
FT                 /translation="MAYQEENKLRPVQLLSTLYTLDKSYTTEIIVGLEYSN
FT                 LQDEYYRPAVRLLGDDSKGITFTHXQWLQFTKCFNDFFKYLCDHSSSSSDS
FT                 MTGQQICGTGWTAKFTHSQRDRAIEIVDSSPPKTFAIVSKRNHSTIILKKA
FT                 KFLRLYEYIVKCIDARLEYLKFVAGSVSCVARETVEYIKSVNPDNIPVRQF
FT                 GIYTITLVKAIINLIDDKWFDSVTTTVQTRAMEMKDQIPLSRNDIVDIFYQ
FT                 LVSHHLDRIVDILX*"
FT   CDS           join(5744..6421,6411..7199,7066..7605)
FT                 /product="Polinton-2_NVi_3p"
FT                 /translation="MDPAGSFSVHIEEANLLVRRVKISPSILLAHAQSLSR
FT                 ATAKYPLTRVEVKAVTMHSGVHGETLDNIILGQLPKRIILGFVNNKAFNGD
FT                 RLLNPFNFEHFNINFLCLYVDGVQVPSKPLQPDFTTRNLYVDAYHTLFSGT
FT                 EIHFLNEGNQVTRENYPHGYCLFAFDLTPDLSANDCSHWNLIKHGSVRLEV
FT                 RFSNALTETVNCILYAEYDNILEIDASRQVIIDFSSISAVKNSLLLTDVAT
FT                 LYCTYKCCACDFYSQSLPLIFDNPALSYTLHSIMDVIIDIQFFKDAKHRNV
FT                 PKEVAVVAVDGNFSSHWILTPAIALDHLSEDIRNENDWLTQYHHGLDYFDG
FT                 EVSFKSVKKILRELSKSVQKIYVRGNDKWLLLRKIIPRRIFNLEYDQECPS
FT                 FAKLSSDVYCMHHAVKTCHSNYRCALNNAYRLKSWLSVRASKKAEIRNTLS
FT                 DLCNGQSSDTKESIENSLAYCRCISSRSDTEGVDETDSVCCKYGAIYAMDS
FT                 LQILKNLSKIRSHTVGVFPADQIPKVWTKPTAFVVNTDDHTRSGMHWVAVY
FT                 ADKSCNAFYFDSFGLPPFIPDHINRLRKNCKHFRWNNIRLQSDSSDVCGQY
FT                 CIMFLHYMSNGLGFKKFLENFSENLQKNDDVVRRYVCCKQRKKSDDDDFIG
FT                 NGSCIVRCLQSCSSKMSLL*"
XX
SQ   Sequence 8996 BP; 2823 A; 1783 C; 2059 G; 2327 T; 4 other;
     agtagtttct caaagatctc gatcgtctgt gcgatacaac aatcgagcgt gtgattatct        60
     actacgcaga gtggcagcca agctacaagg agctacagag caaaaaagta gaatttcgcg       120
     agggtttgcc acagactagt gactgggctg ctgatcctag acctaaactt gttatcattg       180
     atgatttgat gcgtgaatcg tcatccagtg gtagtatagt cgatatattc tctaaagcgt       240
     cccatcatca ctcgctctcg gtgatattca tcacgcagaa cgtcttccat cagggtaaag       300
     gacaacgcga catatctctg aacgctcaat acattgtgat ttttaggaat ttgcgcgaca       360
     gatctcagat actacattta tcgcgtcagc tgtgtccgga ggatccacga ttcttgcaag       420
     aagcctactg ggacgccacc tcgagaccct acggttatct tctgctggat ttgaagcaga       480
     atacaccgga caactgcaga tttcgcacct gtatatttcc ggacgacgag ttgcactacg       540
     tctatgtgtc acgcaataaa aagataaaag gtggtgatac attgaacctt gtaccaatcg       600
     cctccctgtg atgggttcgc ctaagaagcg acatcccttt actcgcaagg acgctgtcat       660
     tctgaaggcg ctttttcatt taaataataa tcagcgaaag gctctcttgc agacggctga       720
     ttcaaaactg gtgcgtcata tttgtgagtg tgccctgaat gtgctaattg gtaacgttcc       780
     actggagaag tctcacaagt cacgtttacg caggcacgca aaaactttgc gaaaactagc       840
     cgaaccttgt gtgagtctgt caaaaaagaa gaaaattatt gtacagcgtg gtggtttctt       900
     gcctgcatta ttagcaccga tcatcggcac gctgttggct agtatcatta gtaagtagac       960
     aatatggaac acgccaaaaa gatggttctt gtacctcacg agaacgttga acgtctccag      1020
     agtgtgttag caaatggtgt ccgcgataat aatgttgggt ctatactaaa gacagttcag      1080
     acaccgggta acgtaatgac caggttggat gctgaaatga gcaatatact gaattcgtct      1140
     acttgcaaaa gtgagcgaga aaaatggagt caatatcgat cagtactaca acgctatctt      1200
     caattcaaag atgttgatag ctatgctaag gtcatgaaaa aggaggagaa agataaagag      1260
     cagcgacaga tgaagaaaaa gaatgacaac gactacgaca aaggcgctga tgacaattac      1320
     aatgacgatg acaatgatat acagcgcgtc gaagaagagg atcggatcga tgcgagtatc      1380
     atagagagtg tacctccaaa gtacagacgt aaagccggcc acgtattgcg taaattacga      1440
     gttagtggta atatcacttg ggatgcaaac ggtggtgtga caataggtgg tgtgcgtata      1500
     caccacgcca acatgattga tctgataaat gatactatga gaaatagaaa atgtccacca      1560
     ccacttggac atacgcaatt cgccgttgct ctccgtgaat catttatacc gcgcgaattc      1620
     atcggtaata agcgcgtttg gaagaatatg atggctggta catcacctgg gaattctaca      1680
     ccagtaccac caggtggtgc tagcggtgtt attccacgtc gggttttgac accagagggc      1740
     atcaatcgtc tatttagaac accatcacct cgtcgtgctg agagtgctag tcgcgcaaat      1800
     agcagtgcta ttgacagtag cgaagcagac aaaagcagta gtggtacggt agcagcgcga      1860
     gtactcaagc gaaaaaaaac agtcgccggt caagcgagtg cgaaaaaaag tagcagcatc      1920
     cacttctgaa gttacaacat ggcgacgttt gagcgggaga ttcagcccga gcaagagacc      1980
     aaaatcacag aagacgaaga acaagagcaa gaacgagcaa gtgtaaaaaa tagtgcacta      2040
     gatgaattga tcgatctact gccgtttgaa atgcacgtgc ccggatacag attctgtggt      2100
     ccaggtacaa aactagcgga acgtattgaa cgtggtgaag tcggcatcaa tccgctggat      2160
     gaggcatgtc gtcagcatga tttagtctac ggggataagc aaggcaatcg acgtaaggct      2220
     gatcgcgtgc tagctgaata cgcattttcg cgaatgctcg cggatgaaac agccagagac      2280
     gagcgaacac tggcaatgat gactgcctgc tgtatggtga gcaagataac gttcgaaaaa      2340
     ttttttcacg aataaaaaga gcgctgaagc agaaaaagaa aaaggacaag aaaataaaga      2400
     agaaatctat tagcaaagtt gacgcatcgg tgaaaacagt gaaagagcat aaaaaaaatt      2460
     gaaaaaagaa aaaaagatgc acaatgagta gtgggatgag ggggtaaaaa gaaaaatttg      2520
     agsaacattt attacgcacc tccacaccca gcagcgtacg ccggtgttga aaaacttttt      2580
     caagctacac ggacaagaaa aaaagtggaa aaaaggtgaa aaagaaaaat ttcatcgtga      2640
     aagtgttgtg gagtggctcg agagtcaaga tgcgtataat ctacatcgac ccgttagacg      2700
     acgatttgca cgacgtagtt acaatgtgcg aaatttagat gatgtgtggg aggctgatct      2760
     gatggatttg agatctctaa aaacttacaa tgacggctac agttacattc tgacggtgat      2820
     cgacgtcgtc agtaaattta gttggctgga gycgatcaag gaaaaaactt cgagaaacgt      2880
     cgctgaggct ttctcacgtg tgttgtcgag aagcaatggg cgtcaaccaa tatgcctcca      2940
     gacagataag ggcaaagaat tcattggtcg tgagacacag caagttttgc gcgacaacga      3000
     cattgttcac agagtggcac gcagcccgga tacaaaggca gccattgcag agagactgat      3060
     acgaactgtc aaggagcgaa tttggcgata ttttacccac aaaaatacac ggagatacat      3120
     cgatgtgttg cagaacataa tagcggcgta caaccacagt aagcactcgg cgacaaagat      3180
     gacaccggca tctgtgactg tgtacaacgt tgccaaagca cgagagaatt tacagcgtcg      3240
     ttacgataag aatgagcata aggtgatgag acctaaattc aaagtcggtg agctggttcg      3300
     cgtcagtcgg gcaagatctg tctttgacaa aggttacgag agaggctgga cactggagct      3360
     atttaaagtc gcacggattt ctctgacacg gcagccacct gtctatcatt tgcaagatct      3420
     gtcgggtgaa gacatagacg gttgttttta cgctgaggaa ttgagcagag ttcgaaagga      3480
     tttggaaggt gcatcttttg aaatagaaag tattttgcgt agcagaggta agggtcgttc      3540
     gaaggagtat ttcgtcagct ggaaaggtta tccagaaaag ttcaattcct gggtcaaggc      3600
     tagccaactt tcgcaaatat gaaagatcaa ttttacatta ttttgcctag caacagcagc      3660
     atgaattatt tctcggaaaa cactacaacg cattatgtta cacagttgcc acaacagatc      3720
     aaattacaag gttcatggtt ggtcgcgctc actcagaagt tcaaatacct ctgacattcc      3780
     aacacgtgcc atctgaaaaa gaggagagaa aaatttccct aaaacgaata ccacccacaa      3840
     gacttgagac aaatgagacg agagaggaaa attttacaat cactgaatca ttgattcgtc      3900
     cgggaaatta tacaaatatt ctcactctag ttgaggaaat aaataattta gaatgcatcc      3960
     gtggtcattt gagggtgaca gttgaacgtg gcggttatgt aacgatcagc cgagtctgcg      4020
     caaagagtag ctgctcacag ttcagtcacg agctctattt atcggaaaaa gtaaaaaaaa      4080
     ttcttggatt tgaaaaagga gagacaagga atttgtttta ttggaaatca atacactata      4140
     gagtcggata gacctgctgg actttccaat gggctaccat ccatgttcat gatctacagc      4200
     gacatctgtg agccatatgt gacaggtgat gttcaatcgc gtctactacg agctgtatcg      4260
     atgaataccg ataattacga atatggtact actcgaatca aaagtttctc cccaccaatg      4320
     tatataccac tgttattcaa cgcatttcag acaattgaaa tagatataag agaccaatgt      4380
     ggccagtcga taccattcga ttacgggaca gtgactgtaa cacttcattt caagaaagtc      4440
     gatgactagt cttcatgaat cgctacgaag attatttcaa ctgccaattt ggcaatggct      4500
     accagtacgg tgggggaggg ggacggaatc cttacaccgg tggagttggc cacatttaca      4560
     tcggatctcc ctaccaaaga ggtcacggcg gtatcggctc ctttctagct ggcatatttc      4620
     gccgcgtcct tccactcatc agtcgcgggg ccaaagctgt gggtaaagag gccgtacgta      4680
     cgggattcaa catcatatcc gacgttgcat cacacaacac accggtgaag gagtctttcc      4740
     gcaatcgtgt gagagaatct ggtgagattc tgaagagaaa agctgaggag aaactggaca      4800
     agttgatgga ggggtcagga tataaaatgt cacgctacgg aaatcctgct cagttgcagt      4860
     tgctcgctgg tcctgtcaca gcgcgtagga gaaaaagagg tgttggcgga agaaagaaac      4920
     gcaagtcgag gagtggtggt ggtgtaaaga agagaagtgc aacaagaaag attaagagac      4980
     agaagaagaa gaagaaaaca tctcgaaata aaaaaccttc gtctagaagg agaaaaagaa      5040
     gcagaacgac gagagatatt tttgacagtt aaagatggcg ttcttacata cccattcgtg      5100
     cgaatgttta aagtcggagc tgctattgtt tgacattcca ccgacccaaa caacaatcga      5160
     aggctcgcat tgggttcaat ataagcctat atcgtctttg accgatgatt caccgataga      5220
     atttgtgata cccgggaaca gcgatgaata tctcgatctg gctcatacaa tgcttagtct      5280
     tcgtgtgagt ataaaatcta gtacaagcga agaagatgtg gctgaggctg atcgagcggc      5340
     ttatagactt ttaacagccc gggtgggacc agtcaacaat tttatgcatt cactattcaa      5400
     tcaagtggat gtatttttca atcagaaacc cgtgtcacca cctaccaatg cttatgccta      5460
     cagagcatac atagagacgc tgctaaatta cggacctgcc gccaaaacct ctcacctgtc      5520
     gactgtgatt gtccttgtgg tgtgacgata cggcatggaa aaatgaacaa cacagaaaac      5580
     ctgaacgagg ggtttgtgga aaggcgaaag ttacttgctg caaataaacc tgttgaccta      5640
     gttggacacc tccatacaga tgtgtttaat caagagaagc tactgctcaa cggcgtcgaa      5700
     gtaagggtgc gtttgagtga aatcgcgcga taacttttgc ctgatggacc ctgcgggctc      5760
     tttttccgta cacattgagg aggccaatct tctagtgaga cgtgtaaaaa tcagtcccag      5820
     tatattgctt gcacatgctc aatcgctctc acgagcaacg gctaaatatc cattgacacg      5880
     ggtggaagtc aaggcagtca ctatgcacag tggtgtacac ggtgaaacat tggacaatat      5940
     catattgggt cagctgccga agagaatcat cctgggtttc gtcaataaca aagcttttaa      6000
     tggtgatcgg ctgctcaatc ccttcaattt tgaacatttt aatataaact ttctatgttt      6060
     gtacgttgat ggggtgcagg tgccctcaaa accactgcaa ccggacttta cgacgagaaa      6120
     tctatatgtg gatgcgtatc acacactgtt ctccggtacg gaaatacact tcctcaacga      6180
     gggtaatcaa gtgacgcgcg agaactatcc ccacggctac tgtctatttg cttttgattt      6240
     gactcccgat ttatcggcga atgactgcag ccactggaat ttgattaaac acggtagtgt      6300
     tagactagaa gtacgtttta gcaatgcact aacagaaacg gtcaattgca ttctgtacgc      6360
     agagtatgat aatattttgg aaattgatgc ctcgcgtcaa gtgatcatag atttcagcag      6420
     ttaaaaacag tttacttctc acagatgtcg ctactctcta ctgtacatat aaatgctgtg      6480
     catgcgactt ctacagtcag tctcttcctc taattttcga caatccagca ctgtcatata      6540
     cgcttcactc aatcatggat gtgatcattg acatacagtt cttcaaggat gccaaacatc      6600
     ggaatgtgcc aaaagaggtt gccgtggtgg ccgttgatgg gaactttagt agtcattgga      6660
     tactgacacc tgcgatagcg cttgatcatc tgagtgaaga tatacgaaac gagaacgatt      6720
     ggctgaccca atatcatcac ggtctggact actttgacgg cgaggtgtca tttaagtcgg      6780
     tgaaaaaaat tttaagagaa ctttcaaaaa gtgtgcaaaa aatatatgtt agaggtaatg      6840
     ataaatggct attgttacgc aaaataatac ctcgccgaat ttttaatctt gagtacgatc      6900
     aggaatgtcc gtctttcgct aaattatcgt ctgatgtata ctgtatgcat cacgctgtta      6960
     aaacttgtca tagtaattat cgatgcgctt taaataacgc ttaccggtta aaatcgtggc      7020
     tgtctgtgcg tgcttccaaa aaagccgaaa ttcggaacac tttaagcgat ctatgcaatg      7080
     gacagtcttc agatactaaa gaatctatcg aaaattcgct cgcatactgt cggtgtattt      7140
     ccagccgatc agataccgaa ggtgtggacg aaaccgacag cgtttgttgt aaatacggat      7200
     gatcatacga gatcgggtat gcattgggtc gccgtatatg cggacaaatc ttgtaacgct      7260
     ttttactttg atagttttgg attaccccca tttatacccg atcatattaa tcgattgaga      7320
     aaaaattgta aacattttcg ctggaataat attcgactac agagcgattc ttccgatgtt      7380
     tgcgggcaat attgcatcat gtttttgcat tacatgagta atggtctggg cttcaagaaa      7440
     tttctcgaaa atttttcaga aaatctgcaa aaaaatgatg acgtggtaag acgatatgtc      7500
     tgctgtaaac aaaggaaaaa aagcgatgac gatgatttca ttggaaatgg cagttgcatt      7560
     gtcaggtgct tacaaagctg tagttctaag atgtcgttat tgtaatccga ggagataatg      7620
     ataccgtatc tctctcacac gtggctgttc ccactaccac cacaatcctt atccccacca      7680
     taccttccca ccttcagact ttgtgctaag agtcagagtt agtcgttcga aggtggcggt      7740
     ggtgatcgtg agagactcgc acaatggcgt accaggagga aaacaaactt cgtccagttc      7800
     agctcctgag cactctgtac actttggaca agtcgtacac aacggaaatc attgtcggcc      7860
     tggaatacag caacttgcaa gacgagtact acagaccagc tgtgcgacta ttaggcgatg      7920
     actcgaaagg aattactttt acccacratc agtggttgca attcacaaag tgtttcaacg      7980
     actttttcaa gtatctttgc gaccacagta gcagcagcag cgattctatg acaggtcaac      8040
     aaatttgcgg tacaggttgg acagcaaaat tcactcacag tcagagagac agggctatcg      8100
     aaattgtgga tagtagccca cccaagacat ttgcaatagt gagcaaacgg aatcattcaa      8160
     ctattattct aaaaaaagct aagtttctac gattgtatga gtatattgtg aaatgcattg      8220
     atgcgcgtct agaatatctt aagtttgtag cgggtagtgt aagttgtgtt gctagagaga      8280
     ctgtagaata cattaagagt gttaatccag acaatatacc agtaagacaa tttggtattt      8340
     atacgataac tcttgtaaaa gcaattatca atcttattga tgataaatgg ttcgatagtg      8400
     tcacaacaac tgtgcagacg cgtgcgatgg aaatgaaaga tcaaattccg ctcagtcgta      8460
     atgatattgt cgatatattt taccaacttg tatctcatca tcttgataga attgtcgata      8520
     tattawaatg aaataggtga ttaattatgt ctgttttctt ttattaattt tactactatc      8580
     cttcttgtaa atattatctt cgaaagcaag aaaaaaagtt accaatgtac atcacaattt      8640
     gtataattat ctcattaaat atatattgaa taaataatct atcgttacaa aatataaaat      8700
     acttatcttg tattatttat tgctatcctt tcttacccat tcccatagta gaaaattatc      8760
     ttaaaaaata tcaagttata ttacattatt cataaaaaca ttcttaaaaa aaaataataa      8820
     gtaaatcaat agagagataa attggggaga gggaacagga agggggaaag aagcgccttc      8880
     ccccactatc gcatgacgtc actcctcgct gtggcgccag acatctatcc caccaccacc      8940
     tctaggcaga taattggggt attgtttgtc tcgtccatag cgaggggtat actact          8996
//
ID   Polinton-2_PBa repbase;    DNA;    INV; 18080 BP.
XX
AC   .
XX
DT   10-MAY-2012 (Rel. 19.03, Created)
DT   10-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-18080
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 643-643 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           4734..9047
FT                 /product="Polinton-2_PBa_1p"
FT                 /translation="KSSIIKIFIINIFCFPFSVQTGGGVSREEEEQEDRYL
FT                 HRLQNHSTDLQQHHQQQHQQQQQHQQQQQQQHSTQQQQQQQQQEHRLTDED
FT                 AAVDDSDTVSENFTYIVLRAENSRKFQKFEVLGREATFAIRPLAEGASDIV
FT                 NYLENAFREIHAYAIRLSGPGDYVGLSFDSPNLSHGPAGLSFRPARDLTHE
FT                 DIWKLVSSVAQSAGGFDIAMDFTIRVFNVAVPLGRGGSNKLTRESVAKRSI
FT                 LQIKNSDNLCLPRSLVAARIYCERGTLRTGELHERWESVRYATSSLQRELA
FT                 IELTRSAGIVIPEEGCGYNEIERFQRFLAAENIAIIIYNFSSFGRGEKPRY
FT                 DGRALLASLGREPSYTLNIMYYEDSRHYNPILNLRAAGGSRGGYCETCNEG
FT                 FRNDRGHRCAKKCPRCRASPPCVNRDREIIRCEACNRTFFGNSCFERHRAE
FT                 KSYNGKSRASICNSVKICSDCGRFIRANTVHKCDTVFCKTCRSLQPSNHLC
FT                 FMRPLARKASDPGEGTSTLIMRAEKKACENENDNVAMNEQTNGRVAFIFYD
FT                 FETRQDETLVGTENVRIHVPTLCVAQQICVACANEDDMTVRCRWCGMREFV
FT                 FRLDPVKQFVDFATRTTKCFKQIICIAHNAKAFDAQFILKYLVENPKSTHE
FT                 PRVILNGTKIVVMTVGHTKFIDSINYMPMRLSDLPKAFGLSDTSNKGCFPH
FT                 LFNTIDNQSYIGSIPDARYYSPDHMSPEEREKFHAWHAEMVRENYIFDFQR
FT                 EIIRYCRNDVDILRRACMSFRKIFLERGNVCPFEECTTIASTCMRVFRKNF
FT                 LREEEIGVIPSGGYRNVDRQSHKALQWLVWMERELGHPIIHAGRGREYKVD
FT                 GTPVDGYYETVTENGSRRWVLQFHGCFWHGCPSCFKVNRDSTLSSANRGDT
FT                 IDARYERTLAMSWRLRKRGYHVMEKWECSFDREISNNREMQNFLKDHPLIK
FT                 NTPLDPREAFYGGRTGNIVTRYEVSGTEKIRYVDVCSLYPFVLKTGVFPIG
FT                 HPKIYVGQECSSLIGVSPNYNFNSVEGLVRCKVLPPRDLFHPVLPYRVQGK
FT                 LLFALCRSCCETFSQVECTHESPVDREFEGTWVSCELRKAVEKGYLVTHVS
FT                 EIWEYKVARYDSDTRQGGLFAEYINTFLQLKQEASGWPSECREDADDDAKE
FT                 RYLREYEETEGITLDRRNIARNPGLRSVAKLCLNSFWGKFGQRSNLPNTEI
FT                 IKSHQQFMTLLTSPEHEITGILPVNDEVIYVSWRLRKEAVVHSPLTNVVIA
FT                 AYTTAQARLKLYSYLELLDKRVLYYDTDSCIYVSTGDPNEYEPRTGNFLGD
FT                 MTDELESYGRGSYIESFVSGGPKFYAYIVRTPSGCTHETCKIKGITLNSSN
FT                 SGLINFSSIKNMLIEKERTRRDEAGPSINLHFSAIRRTAFHDVVTRDETKI
FT                 CSPVLLKRRFINNRYSVPYGYAPE"
FT   CDS           9750..10463
FT                 /product="Polinton-2_PBa_2p"
FT                 /translation="MKSRTDANLAFRKMDVRWKHPWTSIVCGPTGCGKTIF
FT                 VKRFLRHLSEMADVRFERILLYYAEWQDAYQQLQYETRDFVAAIEFHEGLP
FT                 RPEDYSSDPARPKLIIIDDLMRESSSSEAIVDLFTKGSHHKNLSVILITQN
FT                 LFHQGRGQRDISLNANYFVVFKNPRDRAQIRHLARQVYPNDPKFLEEAYHD
FT                 ATSQPHGYLLLDLKQSTPDEYRFRTSIFPDDTANYVYVARRSFSGSFV"
FT   CDS           14585..15907
FT                 /product="Polinton-2_PBa_5p"
FT                 /translation="MSFLHTHSSECLKSELDLFSLPPTQTSIESSQWIYYK
FT                 PVTSLADDAPIEFVVPGHGEDYLDLTHTMLSLRVRVESLPGPGTAAGGNKV
FT                 GPVNHLLHSMFNQIDVYFNQKLVSPPNNAYAYRAYIEALLNYSSPAKTSHL
FT                 TSSLWDTDEPGHMDALLESGTPNQALVRRARYVQGGRSLDLIGHLHCDVFN
FT                 QDKFLINGVEVRMRLVRSRDAFCLMEANSTSKIRILDASLLIRRAKISPGV
FT                 LLDHARMLSKTTAKYPLTRVEVKTFTIHAGVVGESIDNAILGQLPKRVIVG
FT                 FVDNKAFNGDRKLNPFNFKNYGINFFSLYADGMQIPSRPLQPNFSKDEPLY
FT                 IEAYNTLFSGTGIHFLNEGNSISREDYADGFTLFAFDLTPDLSANCAGHWN
FT                 LVRHGSLRLEVRFEKAITTTINCILYAEFENVMEIDSSRQVIVDFSG"
FT   CDS           join(10467..10883,10796..11935)
FT                 /product="Polinton-2_PBa_3p"
FT                 /translation="KYRPRILSRQSRKFLAMKKRTSSINARKIAECSIGKK
FT                 NICLLEALCYSNKNQRASFLRWADEKFIRCICECVFNTLKGNVPLERSEKN
FT                 RLSRYKTTLRHLARKRCNWKSKKKLLLQRGGFLPYLIGPILSFLFSKIIGG
FT                 EKAITTARRIFTVSYRAYTILPIFKNYRRVVREKRNRVMERAKKMVLISTD
FT                 NLERMQXRFQQQQQHPVIGTTENAARQNLEMIQGENLNSVQTPGTPLSRLD
FT                 SDMSRILNSPTPRDVSEKWKLYKEVLWRYLHFDKTQKEDSTRNAADENNSD
FT                 AREGDVAEQARESPSKSPHLEEYVSNTVRAESLRRRERQSVEKILENVPKS
FT                 FRAKARLLLKHLIDKAVPARITWNEEGIVTIEGNVIKDSNITELINDAMRE
FT                 RKTVKAIGRGQFARLLRTTNTPAVLVGNKELLATTFVKILSPPRASSTPKI
FT                 PRKLSTTTTTTTTTGTRRVRRMRKGKKRKTEEXERAKCALFLSPRFRKDDI
FT                 PITFVKDSRQARKRRLLDWSELK"
FT   CDS           15916..16956
FT                 /product="Polinton-2_PBa_6p"
FT                 /translation="MVGNLTPPLWSLLIFTRTTTENSFSFTRHMNYAASEK
FT                 SIFYIMDIIVDIQGFRDIEGKFIPKEVALIGVNEAFVDHWIVLPPYPFTEL
FT                 PEKSRKENNWLSQNFHGIEWIDGTADSEHFTVELREIARRVRYIYSRGREK
FT                 VLYLQKTLGRNVYNLEGISPAFKNLAEDEEHELRCGHHGFHRNSNKFRCAL
FT                 RNACKLRYWMQSQEGSNSSCNSSNDDSFTDESFNDSDTESGVFTIKRNFPN
FT                 LLRWRNKSLETEQAECEQMKAEKEELSKLAHEKKETSTVKSKQEDKNIATP
FT                 ERGEITESSPLSARDEFARNLTGAASSQCRTCGCVSCRQNPDGVDEVDGHR
FT                 REHR"
FT   CDS           join(11935..12669,12639..13073,13024..13917)
FT                 /product="Polinton-2_PBa_4p"
FT                 /translation="MTRLENLYYDPAHYAGYSATDNLARAAKPNFSRKEVA
FT                 RWLESQDAYTLHRPSRRKFPRLRYNVTNIDDLWEADLIELRSLKSYNDGFS
FT                 YLLVIIDVLSKFVWVEPLRDKTSNCVTRGFQNILSRSDGRAPVYLQTDKGK
FT                 EFIARPLQDFLKERGIRYRVARNPDIKAAVVERFNRTLKERMWRYFTHKNT
FT                 RRYIDVLQDIVRAYNHTRHSSIRMQPATVTRENARIARENMERRRGGRERR
FT                 GRRKRREREKGASKVVEQKAKFDVNDLVRVSRAKATFEKGYEARWSEEIFR
FT                 VCRVLHWRKPRVYELCDLSGEHIDGIFYEQELARVNKNLAEEEFIVERVIK
FT                 SKGRGANKQVLVSWQGYPNKFDSWIPASSLTFLQDGGGAIFHGSSERLFSK
FT                 MEEEQFFMVLPSDSSKKYFPGNTTSSFTTQLPHSVHLFGEWEVALSEIQFP
FT                 SSLFHVRRGDNKVRFVDLKNXXDEKNADKFTVKELHLQAGVYENTEELIYA
FT                 INKECRRADSHFTFELQKGSGGNIRISIDCDDNCTLVHYINLPANIFQILK
FT                 INTDDTGTIYRHKLPNSSELTPFLKLGYAIGSGRTVSFWTVEPCSLWHGIP
FT                 DKMYVYCDICEPYITGDTRSPLLRIVSIDTPGCNYTYGTNLVKYFPTLQYT
FT                 PLRQTKFRKIEIDIKDHRGEKIPFESGTLIATLHFRRVR"
XX
SQ   Sequence 18080 BP; 5522 A; 3670 C; 4189 G; 4690 T; 9 other;
     agtagtatgt gggctgctat ggggcgtcaa aacaaacccc caccactttc ccactggcgc        60
     caggggcgtg gcctccagct gtcaagatag ggcctccacg tggaaatgga gcgttctgat       120
     tggctgaggg gcgtggccgg agataattag gtaattaatg gtgcgttctg attggattct       180
     cccatagttg cccggcgtgt gattggacgc tcccatagct gcccacgtgc gtgattggat       240
     gctcccaaag ctgcccgggg tgtgattggt tgtcgaaatg ctagacgaaa agatagggga       300
     ggggatgaaa gtgtctgggt ccgttcgagg tccgacaaaa tggcgtgtgc aaagatggcg       360
     gacacctgag gagaatttgt tccgggatct gatcgggggt gcgataaaat ggcgacaaga       420
     aggatgmcgg ggtgttgaag ggggatatac ctgactagcg gagaatggaa tgcggtttta       480
     tggtacggta gacaggacgg ggcgaagaaa gaaaattgat tctttgtata tgaggggaat       540
     aaatcgaatt tttctcaaga ggattctcga ggtctaatag ctagtgaaac cattaaaaat       600
     ttgttccggg ctgattgggg tctgataaaa tggcgactac ggagatgaca gtcgtctgaa       660
     ggaatatact gacgagaatg gaatgtgaac tttatggtat gatacggtat gaatgacttt       720
     ataacttgga ttgaaggaag gaaattgatt ctttgcattg cattgctccg aggtcgctcg       780
     tgggctccgg caaaatgatg ccagcgataa gaaggacgag gaacgtctga agggaatatg       840
     cttgtcctgg cgagaacgga atgcgamttt tatggtatga tacacagctt agatcgaagg       900
     aaactgattc tctgtatata tgagatacaa atcacgtttt ttcttaagcc ggaaggtttt       960
     tccagaccca atagctaacg aaactattaa aatttgttcc gggtccgctc gtgggatccg      1020
     acaaaatggc gccagcgata agaaggacga cgaacgtctg aagggaatat gcctgtcctg      1080
     acgagaacgg aatgcgaatt tatggtatga tacacagctt agatcgaagg aaactgattc      1140
     tctgtatata tgagatacaa atcacacatt tttcttaaga cgaaagattt tttccaaacc      1200
     taatagctaa cgaaaaacta ttaaaattta ttccggggcc gatcgtgggt ccgacaaaac      1260
     ggcgccagcg ataaaaagga cgacgaaggg aatatgctcg accccggtgc taatggaaaa      1320
     agatttttgc ggtacgatac gcagaacgcc ccgaaagtag gaatttactt tgtatatatg      1380
     ggaatttgtt actttgtata tatgggatgt aaatcgagtt tttcttaaga cgaaaggcct      1440
     ttctcgacgc ctaatagcta gcgaaactta aaaatttgtt tcgagaccgc tcaggattcg      1500
     ataaagcgat atctgcgaca agaaagatga gggaagtctg aagggaatat acttgacctg      1560
     acgagaacgg aatgcgatag gaaaacagga acgaacaggt tcgcactaaa tgtttttcta      1620
     acgaactcgg agctcttatt ctataacaaa cgctctgaaa aaatgtctga aaaatttttt      1680
     agatatttct agctcgaagc aacgtagcgc gttaattttt aggttggagt gaaaagaaaa      1740
     taagaggggc aaagacagga atttaagtta caaaatcatt aagtttattg ttatattgtt      1800
     gtacatatta tatcaattca taaataaaag ttacaaatta cgatttgaga aaataatacg      1860
     aagaatttca ttaaatctca gagaagttaa ttccacaaat attatatcga aatacatatc      1920
     cagaaatgtt aaatcgttta tttgcgtgcg tacattgcgc gcgatttcgt gataatttcc      1980
     tttcaaactg agttttacaa tatcgctatc tatgtaactt tttggaaggt ttaattctat      2040
     ttcttttata agatattgcg cgcatttgtt aacattatcg gtcacgtttt gtaaatgttt      2100
     taagtgcgcg tcgacacatt tcacaatatt tttcaaaccg tgaaaagtac tcttctgcat      2160
     cacaattgcg acagcatagg ttttacgcct cttcgtcggt ggctgcgaat ccgtagtcgt      2220
     tcctcgatgt tgaatttcga tattttccat agtggcctct tcattttctt tatacgccag      2280
     taatatggac cgtgacccat aagaggaggt aaagttgatc gcaacatttt tgacaatgat      2340
     aggatccggt ctcgatttat tgttagcgtt taaatactcg tcgataagcc ccatgttgtt      2400
     taggaattgt tgccaggaat cagcgtcgaa ataaattcct tctgcataat taccggttaa      2460
     tttaaccatt ggcacaaaaa ttccttcgtt tgtcgtttgc aatccgacgt gtatcctttt      2520
     cgtgtgagag atgttgagtc catatgttgt cgagagcatc atatggaact tgtcgtttcg      2580
     ttcctcgtta caattttcct tcggaatatc gcagatgtac ttgcgcctct cggaatcggg      2640
     ggcawtgctc ggttccggag tattacgctt ctcggtatcg ggaacagctt ttcggctcgc      2700
     cattgttcct gttttcttct caaatgtaac taataatcac aagcgtcgaa atgagagact      2760
     acttcggatt tacgaagttg aaacctcgaa ggatggcact cgaatgaacc gagggctgac      2820
     gaattcgtcg agctcatcga cttatctact aagaaaaaag aactgcgcgc gcagatgggc      2880
     aaatgaaaaa ttataaaatt taaaaaattt taaaaggttt taaaatttaa aaattttaaa      2940
     ttgtaaaatt ataaaatctt ttaaacttta gattttctag acttttaaaa cttcttcgca      3000
     aaatattttt taataataaa cctagaaact acaaaataag agagttagag atgtttcttg      3060
     agtggggagc tcggattttc ttttagctaa gttttagcta gagaaataga aaagaaaagg      3120
     tgagagaata gtagaaaagg tgagagaata gaaaaggtgt aacctgtatt aaggagaatt      3180
     ttggcctgtc caatggcgct gcattttctg cgggccgccc tcttttcgga gtgcgcgagt      3240
     aagattttca aagtataaat accgtgcgga attatagaaa agtctatttc cgagattata      3300
     ctttctcggg gtgacttggc cggtttttac attactgcgc cgattcgttc gctgtcttaa      3360
     ttctaaaaaa tagtgaagga gtgaaaaatg gcactcwgtg aaaaattaag aagatttttt      3420
     atcgtgtgcg cgaatatcaa cccgacgata aacgcgagtg cttatatctc attattaaca      3480
     aatgaagaag aaacaaatta catcacgttt gcaaaattcg taccggagtg ctcgaaaacc      3540
     ctattgagca ttatgttcag attagggtat ttcgcggaca aaagactttt aaatattgta      3600
     aaagaataca taaccggtgc aatggctggc gtgggggagg atgatgccgg cggacatatc      3660
     gcttatttta caaggtgcac cggaggaggt aaatatttat ttttaaagta attgaaatta      3720
     gaatatgtag gtataaaaaa ttctaaattt aaatattttt tttaagcgag agataacatc      3780
     gcggttgtac atccgtacca actacgagga ttgagacgcc ccgccgaaga tgaggcggaa      3840
     ggagtaaacg akcgtgagta aaataataga aaattgatat aattgaaaat ctagatttct      3900
     aaattttcag atttttaaat taaaatatcg aatttttagg acgagtgcga atgcggatag      3960
     acgtgcaacc tgaggaggag gaggagggta tcccaacggt tgatctggtt tcaggtaaga      4020
     aaatagcaaa tattgctttc aaaattatct cacagaatat cgaattcaat taataaaagc      4080
     ttaattttgt ttcagatgtg gaggaaaata gcgatgagga gccgactctg agcgaagccg      4140
     acaccgaaat ttacacaccg cgtgagtaat tatttaaaat aataaaagtt ataaaactcg      4200
     tattagctaa ttcttgaaaa aaggataata ataataataa cgacttcttt cttttttagt      4260
     acaagcaaac gacctggatg aatccgaata tggagaagaa gaaaatgagg aggaggagga      4320
     aaacgaagaa gaacaagaag aagatgaaga aggagaagaa attgacgaag aagaaagaca      4380
     agaagataga gaaggagaag aagatgacga tgacgatgac gaggaagaag acgatggcga      4440
     agaaaatgaa aacaggagaa gagcctttga gcaaatgtgc gatgggcttt tagaagaaga      4500
     gatcgaggtt ttccatcagt gcgaaacacg gacgggctat tctccggaaa attatgaagg      4560
     taaatttaat attattttta aattttaaga taatttattc tttccgataa atttataatt      4620
     aaatgttttt ttgctagatt aatacgctct ataaaagctt tgtaaaagcg aagaggaaag      4680
     ctgctcaagg taagagatac cttcggtatg ctggaatcta ttcgctaaca taaaaatcga      4740
     gtataattaa aatatttatc attaatattt tttgtttccc attttcagta caaacaggag      4800
     gaggcgtttc acgcgaagaa gaagaacaag aagatcgtta tttacaccgg cttcagaacc      4860
     attcgacgga tcttcaacag catcaccagc agcaacatca gcaacagcag cagcaccagc      4920
     agcagcagca gcagcagcac agcacacagc agcagcagca gcagcaacag caggagcacc      4980
     ggttaaccga cgaggatgcc gcggtcgacg acagcgacac ggtcagtgaa aatttcactt      5040
     atattgtatt acgggcggaa aactcgcgta aatttcaaaa atttgaagta ctaggtaggg      5100
     aggcgacatt cgcgatacgt cctctcgcgg agggtgctag cgatatcgtg aattatttag      5160
     aaaacgcgtt tcgcgaaatc cacgcgtatg cgatacgttt gagcggaccg ggcgattacg      5220
     tggggttatc cttcgattcg ccaaatttat cgcatggccc tgcaggtctt tcgtttcgtc      5280
     cggcgcgaga cttgactcac gaggacatat ggaaactcgt gagttcggta gcgcaaagcg      5340
     ccgggggttt cgatatcgcg atggatttca ccatacgcgt ttttaacgta gcggtacctt      5400
     tggggcgagg gggatcaaat aaattaacgc gagaaagcgt cgcgaaacgc tcgattttac      5460
     aaataaaaaa ttccgacaat ctatgccttc ctcgctccct cgtagcggcg aggatttact      5520
     gcgagcgtgg tactctgcgc acgggagaat tgcacgaacg gtgggaatcc gtaagatacg      5580
     cgacttcttc gttacagcgt gagttggcga ttgagttaac gaggagcgcg ggtatcgtga      5640
     tccccgagga aggttgcgga tataatgaaa tcgagcgttt tcaacggttt ctcgccgcgg      5700
     aaaatatcgc tataataatt tataatttta gtagttttgg ccgaggtgaa aaaccgaggt      5760
     acgacggtcg cgcattactc gcctccctcg gacgcgaacc ttcgtataca ttaaatataa      5820
     tgtattacga ggattcgcgt cattataacc ctatattaaa tttaagagct gcaggcggtt      5880
     cgcgcggcgg ttactgcgaa acgtgcaacg agggctttcg aaacgatagg ggacatcgtt      5940
     gcgcaaaaaa atgccctcgt tgtcgcgcct cacctccgtg cgtaaatcgt gatagagaaa      6000
     taattaggtg cgaagcgtgt aaccgtacgt ttttcggtaa ttcttgtttc gagcgtcacc      6060
     gagcggaaaa atcatataac gggaaatctc gcgcgagcat atgtaattcc gttaaaattt      6120
     gtagcgattg cgggcgattt atacgtgcaa acacggtaca taaatgcgac acggtctttt      6180
     gtaaaacatg tcgttcgtta caaccgtcga atcatctatg tttcatgcgt cctcttgctc      6240
     gtaaagctag tgatcccggc gagggtacaa gtaccctgat aatgcgagca gaaaaaaagg      6300
     cgtgtgaaaa tgaaaatgat aacgttgcga tgaacgaaca aacaaacggt cgtgtcgcgt      6360
     ttatatttta cgattttgaa acgcggcaag acgagacgct cgtaggtacc gaaaacgtga      6420
     gaattcatgt accgactctt tgcgtagcgc aacaaatttg cgtagcatgt gcaaacgaag      6480
     acgacatgac ggtgcgatgc cgatggtgcg gaatgcgcga gttcgtattc cgtctcgacc      6540
     ccgtgaaaca atttgtcgat ttcgcaacgc gaacgacaaa atgtttcaaa caaattattt      6600
     gtatcgcgca taatgcgaaa gcgttcgacg cgcaatttat cttaaaatat ttagtagaaa      6660
     atccgaagag cacccatgaa ccgcgcgtta ttttgaacgg aacaaaaatc gtcgtaatga      6720
     cggtcggaca tacgaagttt atcgatagca ttaattatat gccgatgcgt ttatccgatt      6780
     tacctaaggc ctttggtctg agcgatacgt cgaataaagg ctgtttcccg cacttattta      6840
     atactatcga taaccaatcg tatataggat caattcccga tgctagatat tattctcccg      6900
     atcacatgtc gccggaagaa cgcgaaaagt tccacgcatg gcacgcggaa atggttcgtg      6960
     aaaattatat ttttgacttt caacgcgaaa ttatcagata ttgtcgaaac gacgtagata      7020
     tccttcgacg agcgtgcatg agttttagaa aaatattttt agaacgtgga aacgtgtgtc      7080
     cgtttgagga atgtacgact atcgcttcca catgcatgag agtttttcgt aaaaactttt      7140
     tgcgtgagga ggaaatagga gtcattccgt cgggcggtta cagaaacgtt gacaggcaat      7200
     cgcacaaagc tctgcagtgg ttggtgtgga tggaacgcga actcggacat cccattatcc      7260
     acgcggggcg aggccgcgaa tataaagtcg atggcacgcc cgttgatgga tattacgaaa      7320
     cggttacgga aaatgggtca cgacgctggg tgctacaatt tcacggttgt ttctggcatg      7380
     ggtgcccttc gtgttttaaa gtaaatcgcg atagtacgct ttcgtctgcg aatcgcgggg      7440
     atacgatcga cgcgcgctac gaacggacgc tcgcgatgtc atggcgcctt cgtaaacgcg      7500
     gttaccacgt gatggagaaa tgggagtgct ccttcgaccg agaaatttcg aataatagag      7560
     aaatgcagaa ttttcttaag gatcatccgt tgataaagaa cactcctctc gatcctcgcg      7620
     aagcgtttta tggtggacgc acgggaaata tcgtcacgcg atacgaagtt tcaggtacgg      7680
     aaaaaatacg ttacgtcgac gtatgttctc tgtatccttt cgtattgaaa accggcgttt      7740
     tcccgatcgg gcatcctaaa atttacgtag ggcaagagtg ttcttcgtta atcggggtat      7800
     caccaaatta taatttcaac tcggtcgaag gtctcgtgcg atgtaaagta ctcccaccac      7860
     gtgatctctt tcatccggta ctaccgtatc gcgtacaagg taaattattg tttgcgttat      7920
     gtcggagttg ctgcgaaacg ttctcacaag ttgagtgtac tcacgagagc ccggtggatc      7980
     gagaattcga gggtacctgg gtatcttgtg aattacgcaa agccgtcgag aagggttatc      8040
     tcgtgacgca tgtgagcgaa atttgggaat ataaagtcgc gcgatacgat agcgatactc      8100
     gtcaaggcgg actgtttgcc gaatatatta ataccttttt gcaattaaaa caagaagcga      8160
     gcggctggcc gagcgaatgc agggaagacg ctgacgatga tgctaaggag cgttaccttc      8220
     gggaatatga ggaaaccgag ggtatcacac tcgacaggcg aaacatcgca cgcaatcccg      8280
     gtttacgttc ggtcgctaag ctttgtttaa attcattttg gggaaaattc ggccaacgat      8340
     ccaatttgcc gaataccgaa attataaaat ctcaccagca atttatgact ttgcttacga      8400
     gtcctgagca cgagataacc ggtatattac ccgtaaacga cgaggtaata tatgtttcgt      8460
     ggcgactccg aaaagaggcg gtcgtgcatt ctccgcttac gaacgttgtg atcgcggcat      8520
     acacaacggc gcaagcacga ttaaaattgt acagttactt agaattattg gataaacggg      8580
     ttttatatta cgacacggat tcgtgtatat atgttagtac cggcgatccg aatgagtatg      8640
     aaccgcgtac ggggaatttc ctgggcgata tgacagacga gctcgagagc tacggccgcg      8700
     gtagctacat cgaatcgttc gtttccggtg gtccgaaatt ctacgcgtac attgttcgta      8760
     ctccgtcggg gtgcacacac gaaacatgta aaattaaggg tattacttta aattcatcga      8820
     atagcgggtt aataaatttt agcagtatta agaatatgtt aatagaaaag gaaagaacaa      8880
     gacgagacga agccggtcca tcgataaatc tacatttcag tgcaattcga cgcacagcgt      8940
     ttcacgacgt tgttacgcga gatgaaacaa agatatgctc accggtattg ctgaaacgta      9000
     gatttattaa taaccgttat tcggttccgt acggttatgc accggaataa attttctcgt      9060
     cctaatcttt cttaaataat cgagttttcc gcccctagtc aaagattgta agaaattttt      9120
     gtaaaatata tttttcagag agaacgagat gtaaaaataa tgtaaatgtg tacatgtgct      9180
     aatattaatt tatatcttaa gtaaatattg taattttaaa attaagaagt tttattttta      9240
     taaaattgat tttcgattta ttttaaataa atctataaaa attatatttc ttaaaacatg      9300
     ttttttcccg taactccttt ccgccttcct tccgccattt aaaaaaaata aacgtattta      9360
     catgcacaga aaaaatttga tttctttaat ttccttccct cgctgtattt tttataaaaa      9420
     cgataccttt tatagaaaag gtaagaatat atatatagaa caaattttaa aaaagatttt      9480
     tcatttcata taaaaatatt ttatatttaa gaaaaatgat tttatcttta attttttaac      9540
     gcaaactata tggctggctt ataacgctgt ttcgctggcg cgagcatctt cgaggataag      9600
     cttgctcaca ccgcgggggt gaatcagctc gccccgcggt gtttttcgct agccctcgcg      9660
     ggggaacgct ggcgcgagcg tatcttcgcc gcggtgggcc ccccggtcgc tgggataagc      9720
     ttacagcccc ctcacaacca tcagccttta tgaaatcgcg cacagacgcg aatctggcat      9780
     ttcgtaaaat ggatgtacgg tggaaacatc cgtggacgtc gatcgtgtgc ggtcccacag      9840
     gatgtgggaa aacgattttt gtgaagagat ttcttcgtca tttatccgaa atggccgatg      9900
     tacgtttcga aagaattttg ctttattacg cggagtggca ggatgcttat caacagcttc      9960
     aatacgaaac tcgagatttc gttgcggcga tcgaatttca cgagggatta ccgcgtccgg     10020
     aagattattc tagcgatcca gctcgtccga aattgataat aattgacgat cttatgaggg     10080
     aatcgtcttc gagcgaagcg atcgtagatc tgtttaccaa gggaagtcat cataaaaatc     10140
     tcagcgtaat tctcatcaca caaaatctct ttcatcaggg gcgcggacaa cgcgacatat     10200
     ctctgaacgc gaattacttt gtggttttca aaaatccccg ggatcgcgcg caaattcgtc     10260
     atctcgctcg tcaagtctat ccgaacgatc caaagtttct cgaggaagcg taccacgacg     10320
     ccacgtccca acctcacgga tatttattgc ttgatctaaa acaatcgact ccggacgagt     10380
     atcgttttcg cacgagcata tttcccgatg atacagcgaa ttacgtttat gtagcgcgca     10440
     gatccttttc cggaagtttc gtataaaagt atcgtccacg cattctctcg cggcagtcgc     10500
     gcaagttcct cgcgatgaag aagagaacgt catcgattaa tgcgagaaaa atcgcggaat     10560
     gctcgatcgg taagaaaaat atctgtcttc tcgaagcgct gtgttattcg aacaaaaatc     10620
     agcgcgcctc tttcttacgc tgggcagacg aaaaattcat tcgctgtatc tgtgagtgcg     10680
     ttttcaatac tctcaagggt aacgttccgc tcgaacgcag tgaaaaaaat cgtctaagca     10740
     gatataaaac aactttgcgt cacttagcga gaaaacgttg taattggaaa agtaagaaaa     10800
     agctattact acagcgaggc ggatttttac cgtatcttat cgggcctata ctatccttcc     10860
     tattttcaaa aattatcgga gggtagttcg agagaaaaga aatcgagtta tggaaagggc     10920
     aaagaagatg gtcttgattt ccacggataa tctcgaaaga atgcagcawc ggttccaaca     10980
     acaacaacaa catccggtaa taggcacgac ggaaaacgcc gcacgacaga atttggagat     11040
     gatacaggga gaaaatttaa attccgtaca aacacccggt acgcctttat cacgactcga     11100
     ttcagatatg agcaggattc ttaattcacc cactccgcgc gatgtaagcg agaaatggaa     11160
     attgtataag gaagtacttt ggcgatatct tcattttgat aaaacgcaaa aggaagattc     11220
     gacgcgtaac gccgccgatg agaacaattc agatgcgcgg gagggagacg tagcggaaca     11280
     ggcgcgcgaa tcaccgagca aatctcctca tctcgaagag tacgtaagta atacagtacg     11340
     ggccgagtct ttgcgtaggc gcgagcggca aagcgtcgaa aaaatattag aaaatgtgcc     11400
     gaaaagtttt cgtgccaagg cacgtttact tttgaaacat ttgattgata aagcagtacc     11460
     cgcgagaatt acttggaacg aagaaggaat cgtgactatc gagggtaacg ttataaaaga     11520
     ttcgaatatc acggaactga taaacgatgc gatgcgcgaa agaaaaaccg tgaaagcaat     11580
     aggaagaggt cagtttgcac gattactgcg tacgacgaac accccggctg tactcgtagg     11640
     aaataaggaa ttgttagcaa ccacatttgt caagatatta tcaccaccac gagcgagttc     11700
     caccccgaaa ataccaagaa aactttcaac gacgacgacg acgacgacga cgacggggac     11760
     gaggagggta cgacgcatga gaaagggaaa aaaacgcaag accgaagaag wagagcgagc     11820
     gaagtgcgca ttgtttcttt cgccgcgttt tcgtaaagac gatatcccta taaccttcgt     11880
     gaaagattct cgacaggcaa gaaagagacg cttactcgat tggagtgaat tgaaatgacc     11940
     aggcttgaaa atttgtatta cgatccagcg cactatgcgg ggtattcggc aacggataac     12000
     ttggcgcgtg ccgctaaacc gaatttctct cgtaaagaag tagctcgctg gctcgaatcg     12060
     caagacgcgt acacactgca ccgcccctcg aggcgaaaat ttccacgatt acgttacaac     12120
     gtgacgaata tcgacgatct gtgggaggcc gatttgatcg aactccgtag tctcaagagt     12180
     tataacgacg gattttctta tctgctcgtg attatcgacg tacttagcaa attcgtctgg     12240
     gtggaaccgc tgcgggataa aacgagtaat tgcgtgacaa ggggcttcca aaacattctc     12300
     tcgagaagcg atggacgagc gcccgtgtac ttacaaaccg acaagggtaa agaatttatc     12360
     gcacgcccgc tgcaagattt tctgaaagaa agaggcatac gttatcgcgt agctcgcaat     12420
     ccagacatca aagccgctgt cgttgaacgc ttcaatagaa cgttgaagga gcgaatgtgg     12480
     cgctatttta cgcataaaaa cacgcggcgt tacatcgatg tgttgcaaga tatcgtgcgc     12540
     gcttacaatc acacccgtca ttcgtccatc aggatgcaac cggcgaccgt tacgagagaa     12600
     aatgcccgca tcgcacgtga aaatatggag cgacgtagag gcgggagaga gagaaggggg     12660
     cgtcgaaagt agtagaacaa aaggctaaat tcgatgttaa cgatctcgta cgcgtcagta     12720
     gagcgaaagc cactttcgag aaaggatacg aagcgcggtg gagcgaggaa atatttcgag     12780
     tttgtcgcgt tctccattgg cgaaaacccc gcgtgtacga attgtgcgat ttatcgggtg     12840
     aacacatcga tgggattttt tatgaacaag aattagcacg ggtcaataaa aacttggcgg     12900
     aagaagagtt tatcgtcgag cgcgtgataa agagcaaagg acgcggtgct aataaacagg     12960
     tgctagttag ctggcaagga tatcccaaca aattcgacag ttggatcccc gcttcgagtt     13020
     taacttttct ccaagatgga ggaggagcaa tttttcatgg ttcttccgag cgatagcagt     13080
     aagaagtatt ttccgggaaa tacaacctct tctttcacca cacaattacc tcatagtgta     13140
     catttattcg gagaatggga agtcgcgctt agcgagattc aatttccctc cagtctcttc     13200
     cacgtacgtc gaggagataa taaggttaga tttgtcgatt tgaagaacgw aaakgatgag     13260
     aaaaatgctg ataagtttac ggtgaaagaa ttgcacttac aggcaggggt ttatgaaaat     13320
     acagaggaac ttatctacgc gattaataaa gagtgcagac gcgccgattc gcattttact     13380
     ttcgaactac aaaaaggctc aggtggtaat atccgtataa gcatcgattg tgacgacaac     13440
     tgtactctcg ttcattatat aaatctgcca gctaatattt ttcaaatatt gaagatcaac     13500
     accgatgata ccggcacaat ttaccgtcac aagttaccta attccagcga attaacgccg     13560
     tttttgaaac tcggttatgc catcggtagt ggacgcacag tatctttctg gactgtagaa     13620
     ccctgtagcc tatggcacgg tatccctgat aaaatgtacg tttattgcga catttgcgag     13680
     ccttacataa ccggcgatac gcggagtccg cttcttcgaa tcgtttcaat cgatacaccc     13740
     ggctgtaatt acacgtacgg gacgaatctg gtaaaatatt tccccactct gcaatatact     13800
     ccattgcgtc aaacgaaatt ccgtaaaatt gaaatagata taaaagatca tcgtggagaa     13860
     aaaataccat tcgaatccgg aacgctgata gcgacattac actttagacg tgtccgttaa     13920
     ttatcatttg cggtggaaag tctcggagct ttgagaaaaa actaatcacc ccatggaata     13980
     cgacgagtat tacgaaaggc agaacggtgg aggtagggga ggaggaattc cgcgaatttt     14040
     cgtcggttca ccctatcaac gtggtcacgg aatcgggagt ttcctcggag gattatttag     14100
     aagggcactt ccttatctaa gcaggggaat acgtgcactc gggaaagaag ctttacgcgc     14160
     cggaattggc gtgatagagg atgttgaaaa caatactccg ttcaaggaag ctctcaaaac     14220
     gcgactcaag gaatcgggta gaaatctcaa gagaaaagcc agagaaaata taagcgaatt     14280
     aatgaaggga tcgggatata aaacatccgc aaaaatgcgc gtggctcagt ttccctttgg     14340
     agggcacgac gcacgcaccg gtaaatccgg gagaagccct gttcgtaaac gtagacgagt     14400
     cggtaaaaaa aagaaatcga cgaaaatcgg cgtgaaaaaa ccgaataaaa aatcatcgaa     14460
     aaggaaagca gcggcgaaaa aaactaaaaa gcggacgaaa catcgacgaa atagcgggaa     14520
     aaagcgcacc gtatccgata tattcgctta actgacgcga gtgtgaatcg taagtttgag     14580
     aaatatgtct tttctccata ctcactcgag cgagtgttta aagagtgagc tcgatctttt     14640
     cagtttacca cctactcaaa cgagtatcga gagttcacaa tggatttatt acaaaccggt     14700
     aacttcgctc gcggacgacg cacctataga attcgtcgta cccggacacg gagaagatta     14760
     tctagatctc acgcatacca tgctaagcct tcgcgtacga gtggaaagtt tacccggccc     14820
     tggaacagcg gcaggaggaa acaaagtagg ccctgtaaat catctactac attcgatgtt     14880
     caaccagatc gatgtatact tcaatcaaaa actcgtatca cccccgaaca acgcctacgc     14940
     gtaccgcgcg tacatcgaag cattgttaaa ttattcttca ccggcaaaaa cttcccatct     15000
     gacttcttct ctctgggaca cggacgagcc cggtcatatg gacgcgctat tagaatcggg     15060
     aaccccaaat caagctctcg taagacgcgc ccgatacgtc caaggaggtc gttcgctgga     15120
     tctaataggc catcttcatt gcgacgtctt taatcaggat aaatttttaa ttaatggggt     15180
     agaggttaga atgagactcg ttcgctcgag agatgcgttt tgtctcatgg aagccaactc     15240
     aacgtcgaaa atacgtattc tagatgctag tttgctcata agaagagcaa aaataagccc     15300
     cggagtgtta ctcgatcatg cgagaatgtt gagtaaaaca accgccaagt atcctctgac     15360
     acgagtcgaa gttaaaacgt tcacgattca cgcaggagtg gtaggagaat cgattgataa     15420
     cgcgatactc ggccagcttc caaaacgcgt aatagtcgga ttcgtcgata acaaagcgtt     15480
     taacggcgat agaaagctaa atccatttaa tttcaaaaat tacggcataa atttcttctc     15540
     gttatatgcc gatggcatgc aaattccgag cagaccgctg caaccaaatt tttcaaaaga     15600
     cgagccgctc tacatcgagg cttataacac cctcttctcg ggaactggca tccattttct     15660
     aaacgagggg aattccataa gcagagaaga ttatgccgat ggattcacgc ttttcgcttt     15720
     cgatctcact cccgatctat cggcaaattg cgcaggacat tggaatcttg tcagacatgg     15780
     aagtttacga ttagaggtac gattcgaaaa ggcgattaca acaacgatta attgtatcct     15840
     ttacgcagag ttcgaaaacg tgatggaaat cgactcttcg cgtcaagtca ttgtagattt     15900
     tagcggataa agacaatggt gggaaacctc acccctccac tgtggtcact ccttatattt     15960
     actcgaacta caacggaaaa cagcttcagt tttactcgac acatgaacta cgccgcttcg     16020
     gaaaaaagca tattctacat catggatata atcgtcgata tacaaggttt ccgtgacatc     16080
     gagggaaagt ttataccgaa ggaagttgcg ctcatcgggg ttaacgaagc tttcgtagat     16140
     cattggattg tgctaccacc gtatccgttc accgaattac ccgaaaaatc gagaaaagaa     16200
     aacaactggc tctcgcaaaa cttccacggt atcgaatgga ttgacggaac agccgattcc     16260
     gaacatttca cggtggaact acgtgaaatt gcacggcggg tacgttacat atatagcaga     16320
     ggccgtgaga aagtacttta tttgcaaaag acgctcggca gaaacgtata taatctagaa     16380
     ggaatctctc ccgcattcaa aaacctagcg gaagacgagg agcatgaatt acgctgcggt     16440
     catcacgggt ttcatcgaaa ttctaacaaa tttcgttgcg cgttgcgcaa cgcgtgcaaa     16500
     ctgagatact ggatgcaatc gcaagaaggc agcaacagca gctgtaactc gagcaacgat     16560
     gattctttta ccgatgaaag cttcaatgac tccgatacag aaagcggagt ttttacgata     16620
     aaacgaaatt ttccgaatct ccttaggtgg agaaataaga gcttggaaac agaacaagcg     16680
     gagtgcgaac aaatgaaagc ggagaaagaa gagctatcga aactcgcaca tgaaaaaaag     16740
     gagacttcta ccgtaaaatc caagcaagag gataaaaata tagcgacacc agagaggggg     16800
     gaaataactg aatcgtctcc cctttctgcg agagatgaat tcgctcgaaa tcttacgggc     16860
     gctgcgtcat ctcagtgtcg gacatgcggg tgtgtatcct gccgacagaa tcccgatggt     16920
     gtggacgaag tcgacggcca tcgtcgcgaa caccgataat cacgatcgcc ctggacaaca     16980
     ctgggtcgcc ttctacatag acaagcatgg agaaggcact tatttcgata gctacggact     17040
     acctcccttg gattccagat tcaatctgcg acttcaacga aactctacta cccatagatg     17100
     gaacatcatg cgtctacagg gcacattttc tcagacttgt gggcaatatt gctgcgtatt     17160
     tctttattat ttgtcccgcg gttataatct taaacaattt ctcgaaacat tcagcgagga     17220
     ttacgaagat aatgatagat taattgtaca attatttcgt aaaatctttc ttcatggaaa     17280
     aagtaaatgc gataaatctc atataacgtg ctgccatata caaacttgta cttttaagaa     17340
     taagtaaata ttaaaaaaca ctattatgaa atgatatgta caatgatgta ttacataata     17400
     ataataataa acttaatgat tttgtaactt aaattccagc cctcttattt tccctccaac     17460
     ctaaaattaa tcctagctac attacttcaa gctaaaaata tctaaaacat tttgcagaca     17520
     ttgcgtttgt cataggataa gagcttcgta taaccccgag gtcgttaaaa catctaaagc     17580
     gaacttgtcc gttcctgttt tcccatcgca ttccattctt cgctagtcag gtatatcccc     17640
     cttcaacacc ccgtcatcct tcttgtcgcc attttatcgc acccccgatc agatcccgga     17700
     acaaattctc ctcaggtgtc cgccatcttt gcacacgcca ttttgtcgga ccccgaacgg     17760
     ccccagacac tttcatcccc tcccctatct tttcgtctag catttcgaca accaatcaca     17820
     ccccgggcag ctttgggagc atccaatcac gcacgtgggc agctatggga gcgtccaatc     17880
     acacgccggg caactatggg agaatccaat cagaacgcac cactaattac ctaattatct     17940
     ccggccacgc ccctcagcca atcagaacgc tccatttcca cgtggaggcc ctatcttgac     18000
     agctggaggc cacgcccctg gcgccagtgg gaaagtggtg ggggtttgtt ttgacgcccc     18060
     atagcagccc acatactact                                                 18080
//
ID   Polinton-2_RPr repbase;    DNA;    INV; 17029 BP.
XX
AC   .
XX
DT   08-AUG-2012 (Rel. 20.10, Created)
DT   08-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Polinton DNA transposons: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-17029
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3328-3328 (2015).
XX
DR   [1] (Consensus)
XX
CC   A few copies in the genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           3782..2199
FT                 /product="Polinton-2_RPr_1p"
FT                 /translation="MIRYLILTVCLPYALSYNNSTINYLQIYGYLNQDDSS
FT                 LTAASSALKLFQTIHSLPADGQENEETIRFMNRSRCGVEDNFTPFMVDSSK
FT                 YKWGGQNLTWTIYPVKYFVVAEKAFSLWSKHSGLGFHHDQHKPNITISFAS
FT                 RKHLCTTNRWNFCFKDFDGLGGVLAHAEFPSEDREQVEIHVDENEHWNGAL
FT                 MIPADDELSLYSVLIHEIGHALGLQHTSHKNSIMYPYYYFPGFIKHIDDID
FT                 LQTPEIDAIQLLYGEKKMTVTKPTTTTTTTTTTPKPIPPFQPLLADICQFK
FT                 NVIDNFLVINKRIYFFYRRLVWSIPLQKNLRNIRDFTRPLSIMRWLDFLPK
FT                 NFVKVSAIYQRPNNDIVLIANRQVYLLDHMVLRLKSRPSYHSLLRDGNVNA
FT                 VINANKGKTYVIYDSFFVNEINECDDLKGDYVGDISNVFPGIPRNVSTAFK
FT                 GIDGCLYFKANDLFYIYNEFLESSVGTLNNPLSLFDIECNERDNIINDIHG
FT                 LVKKLWYKQSTQVTTATTTTTSVDEIYDSLNI"
FT   CDS           7239..6556
FT                 /product="Polinton-2_RPr_3p"
FT                 /translation="MRLEKQSERLPIYNLLPDVENLASRHGVLLPNSIRAL
FT                 ICGTSGSGKTNLITCLILHPNGLKFENIYVCSRSLQQEKYLYLEEVCKRVP
FT                 EVGFSTVNDTNQVPTPEEAKTNSIIIFDDIAMDQQDVIRQYFSMSRHRSID
FT                 CFYLTQSYARIPKHLIRDNANFIMLFKQDDLNLRHVYSDHISSPDISFEKF
FT                 KQICHACWDEPHGFVAIDKTRDVNKGRFRKGLDTFIYI"
FT   CDS           14732..11484
FT                 /product="Polinton-2_RPr_6p"
FT                 /translation="MQMVQDMKQLVLRNQEKKKKFHLWEPKKDELYSEQRE
FT                 EIEYETAFKHRLKSWFFSCVTCQDLHEFLSNIRGKIIDKIKKLLESYTAIK
FT                 VNIMVECVFVNTLDEETDRSFKTKNKPVFQATDXAEFVDEEFASIIVEKEE
FT                 AQMKKSGWSLKKVNGLRLRINKYSPLSFKGSSYIALPEVIERKKACINVKN
FT                 NDFECFRYSILAKLVTKDAARMSKYKNLVHGYNFDCITFPTPLSSIPIFEK
FT                 MNNISINVFGLEENNSLFPLKVVKEELADHRDLLLLSDDEGRTHYVYVKNF
FT                 DKLIRLQKTRRKCGIKVCKRCFTHYQTLNGESAEEKLNEHSRFCTEHQVAR
FT                 IEMPVKKPYLQFEHVERVLRVPYVIYADFEAILQPVIGCDPNPQDTYTNIY
FT                 SKHIPMSFCIYVKESAQVCDVPSSLPKKPYIYRGGNAAAHFVECLKRIAEE
FT                 ILRLYSLPNTAMDISEEEELSFQSARTCHLCNQQIEEGQTKVRDHCHITCK
FT                 YRGAAHDYCNLRIQNPTFIPVLLHNLSGYDSHFIVKELGFDEETIDLIPSS
FT                 SEKYISFSKSINGGRIKLRFLDTFRFMPSSLDSLVRNLSELEEVNRFFPSK
FT                 HADLLTRKGVFPYEYITDWNKLEETSLPPKESFYSRLNQSGISQEDYEHAV
FT                 NVWNTFQFKTLGQYADHYLLLDTLQLCSVFENFRTITLKNHKLDPCHYYTA
FT                 PGLTFDAMLKFTNVRLQLLTDYDMILLLERGIRGGICQVSHRYAXANNHYM
FT                 TDYDANKESTFISYQDCTNLYGKAMTMSLPYGGFQWVPPETFSLESTKDDD
FT                 DVGYILDVDLEYPSQLHKLHNDLPFLPETITINKHKKLVPHLGTRSNYVVH
FT                 YVTLRQALEHGLKLVKINRVLKFNQSKWLSPYVEFNAELRKVARNDFEKDF
FT                 FKLMNNAIFGKTMENIRKRVNIQLVSSARKIERLVARPDFIDRTIIGENLA
FT                 AIHMAKRCIVFNKPIYVGMSILDLSKTVMYNYHYNIMLPKYGIERLKLCYV
FT                 DTDSFTYFLKTQDFYKDMTSLLDYMDTSDYPANHPCYSIKNRKVMGTFKDE
FT                 VAGKIIRGFVGLRAKMYSIDVEGGKX"
FT   CDS           join(7453..7887,7891..8232)
FT                 /product="Polinton-2_RPr_4p"
FT                 /translation="MKAKVKLGGGNGKRRKCVSVKDVINAARITSPLLSIS
FT                 DGSKKALRKAKRYIKNKTKIRKIPRVLPVPRTGGILPFLVPLFAGLSALGS
FT                 LAGGATAIAKAVKNTQEARDRLEEMRRHNRKMEEQHVGSGFFLKPYKTGYG
FT                 LVKKAELLPPTTNIDLLKFAKDIPHFRGVYMRDTLPKDIKADECAIVNLDS
FT                 IRNNGTHWVAYSKKGNEITYFDPFGNLRPPLELLRYFKNCKITYNRQRYQE
FT                 WNTPYCGHLCLNFLYNNA"
FT   CDS           join(9094..10290,10280..10996)
FT                 /product="Polinton-2_RPr_5p"
FT                 /translation="MEEILNVNDEVVFDDRITDYQWHNHMPINSSMNNSDE
FT                 IIISIQQQDIFTVPSKSFLYIQGQVKKEADQDVKLVRNAFLFLFDEIKYQL
FT                 NGVLIDHVRNPGITTTLKGYVSFTRDKVETLEIAGWKPPSGCKSSDEEGNF
FT                 DCCIPLDTVMGFFEDYNRIILQGRHELILHRSKSDNDSMLAAHATTKANIE
FT                 IKSIQWRVPYVKVSDQQKLKFLNVVNRGKTIPMAFRSWDLIEYPTLPASTK
FT                 HTWALKTSTNLEKPRYVIVGFQTNRKHNFTADPTIFDQCNITNVKLFLNSQ
FT                 AYPYHDLNVNYNKNYYSSIYYMYQDFQNSYYGRENNPLLCKHMFKDLAPII
FT                 VIDCSRQSEAIRSSSVDIRIEMECSEAFKANTTAYALILHDTLVEYSPLQG
FT                 LVRRISDVYKTSFFFFVGYCWIYNAAASRESQSVSSSVTAMNGVVIDFQAF
FT                 LFKKKYIVKEVTLIDLLNYTVIAHWLLTPPEEKXXEGRSYPNKWLESNLHA
FT                 XEWTKGDIRYEXFNSLIQXATQDFRALFGKGYEKCKHLGNILGRDVLDLGE
FT                 FGCPSLQKLPGATLFEICEDTHSYRTQYCSLKQAKQLAFWISANLDKVNLE
FT                 QMDARIKTFSDYDGELDGNLLAIHGLLPLPENSYMLLLRQ"
FT   CDS           join(6518..5616,5612..5175,5238..4258,4248..3886)
FT                 /product="Polinton-2_RPr_2p"
FT                 /translation="MDPKLTKQLIQTSQILRNKFKSMKRGLQLSQEKLETS
FT                 FRPITAPLQELVKKKKKXEEAMVKVEPVKKEEEEEETPLKHDSLLLQXLKG
FT                 EESIGPLLKPYVYKSITSAXTAAASDLDDRYGIRILPTGGMVIGNVNVTIN
FT                 GNDLVIKNKLFEGTPGLYQLLFLKRPTSYTENDLQVYKNILELSNAHKQQF
FT                 SEEKQMSGSKGWKYKNIVRPLFHPGEGGAEHRLLPQASPPPPSKPYQFRSV
FT                 KKKTGMGMWEGQSIYEYWDDPNELIARLQILFASKLAGHSGHENEIESIIE
FT                 ELXEANIIYNYGNVISFACTGHMSTIDKFGRPWSQSPLHVDRKEEEEYVDF
FT                 KHKRLTGIDDPVDIYDAVNKRHLQNYYVKLADLEEYMRVYVTKLVNEREDL
FT                 VTKSYLLNVYDQSRLQSTTTFVNRIFEVMNNRISLLPPHTPVTAFLLKKVL
FT                 ETNKSIAAAYTCYSLSVEKSSRNVMANIKEEIVDELHKPSRVHYPRRQTIL
FT                 KGLDDLWQMDLIEFLPYARENKGFKYILTVIDCFSKFAWVEPVKSKGGKDI
FT                 VKALEHILSGSGRIPENIQTDNGKEFYNAHFKQLMKSYQINHYSTFSKIKC
FT                 AIVERFNRTFKGLMYRLFSLQGSYKYIGHLSRLIDKYNNTVHRTIGMKPSE
FT                 VNQSNAHEILTXKRRRQRGEPRFKEGDYVRISKNRTVFSRGFTPNWSAEIF
FT                 KVVAVRRTIPYTYLLEDMSKQPIQGAFYSQELQKTKFKDVYLVEKILRRKH
FT                 DKVYVKWWGFPKPSWINAKDLVNIFAFIFSLPFVQLTSSSWNTEHLESILS
FT                 HPLYGRFRQDLDSIKVNLGDFDKAALLVKVESAIKDLEEIAKECKQRSTTD
FT                 GXHYANCVWANEDCEEGPDTCICSYAAMLDHEISQALNTLYG"
XX
SQ   Sequence 17029 BP; 5148 A; 3411 C; 3059 G; 5357 T; 54 other;
     agtagatata aagtggggat cctggcgcag ggcaaatgag ccakgccccc cagccgcctc        60
     tggtttacgw tatccttacc cctctccctc aacattgtgc aggtagtcmc cctctacccc       120
     cacccccacc camgwccccc aactcctcca tcgcagcccc ccagcckcct ctggtttacg       180
     wtatccttac ccctctccct caacattgtg caggtagtcm ccctctaccc ccacccccac       240
     ccacawcccc caactcctcc atcgcagccc cccagccgcc tctggtttac aatatcctta       300
     cccctctccc tcaacattgt gcaggtagtc ctcctctacc cccaccccca cccccaaccc       360
     ccaactcctc catcgcagag tagatataaa gtggggatcc tggcgcaggg gcaaatgagc       420
     caggcccccc agccgcctct ggtttacaat atccttaccc ctctccctca acattgtgta       480
     ggtagtcccc ctctaccccc cgcccccaga cagggcaaat gagtgagaaa taaaaaatta       540
     tttttatctg gtgtattcga tccgacgact ctgtgcacca aaagccgacg ctttaccatc       600
     cttgaccata gtggtagtct tgtgtatggt tatgaaagat gtgaatctta tgtttcgcgg       660
     cggcggttct ctctgtgggg gattccagtt ttgtgcccgg ggatccggtt ttgatgtcaa       720
     ggttacgtag gcgacagttg ctgttggctc agggttattc cagcagtgaa ttccttttga       780
     gggggggttg tcctggtagt tacatgtcgc ggcaggtgtg cgcactgctg gaacatgctc       840
     gtgcatagca gggttaatgc actggtggtg ttgagatcag gtttttaaat gtcaaggtta       900
     tgtaggcgtg gctgttggta gggttattgc accggttata gttttgttta ctcttaattc       960
     cttttaccgg cgtgtatata taggatatat atttatttta tcttaaagat tgaatcttac      1020
     gaccgtgagg tgcggcggta gttagataag aaatcggtgg attatatatc atataggtaa      1080
     gaaacacctt gctatgctat ttggcgaagc gatttcagcg acccccacwc ctttaccaac      1140
     tggacagstg tattgcacaw cattatgcaa agagtaacgg ctacagtttt actacctacc      1200
     ttaaatgtgs tgcggcggta gttagataag aaatcggtgg tgggggatta tatattcaag      1260
     tttttawtat atctaccttt agttaccaac atgtctaata aagagtatgg acttcaattg      1320
     tgcaccagtt ttgccatcaa caatagtaat agtaagagaa tcatttccgg tctatctgaa      1380
     gatgatattc ctattgctgc gttgaaagga cgkaaggctg aggtgattta tattagccag      1440
     gaggattggc gtgttttcta cgacaagcgt ggaatatgtg aagatttttt caagaaaaaa      1500
     aaggtggagg aggaggaaat tagattgcaa tattcgacaa tgactttgga gaagaagggt      1560
     gtgcataagg tgattacatt tacggccaaa cctacatgga tggatacatt tttgaattta      1620
     gagcctccta aaatatctct gttaagaaat gaatattttc aactgttggc aatgtataat      1680
     tgtttacaag atcagtttaa ttatttaagt agaatctata agccttgtac gctagaatat      1740
     aatccagagg agaataaaga gaattagaaa ttcatgtgtt ttttttttat ttctacttaa      1800
     cccccgtcaa ggacaaggaa ataaaaaaaa aattaaaaaa aattatattc ttaatctttt      1860
     acatctgttt tttattactt tcttcaacat taaatacttt acacatttgg atttatgaaa      1920
     tgaaagtatt tgcgaccgtg cccaaaatac tttacatcct tgacattgct taatctctgg      1980
     gttcatcttt gaacattccc taatatggtc tgccaacgaa ccagtcctga caatgtgtgt      2040
     gtaaataatt gggcatctag atactaaaag agaagtacaa ttaaaaacaa aaacaaaaaa      2100
     aaaatcgtaa aaaaaattct tacagtttas atggctcatg gtgtggatgt tgtggcaaaa      2160
     ctgaaccgga attatttaac ccctacatat atatattaaa tgtttaggct gtcataaatt      2220
     tcgtccacag aagtggtggt ggtagtggca gtggtaactt gtgtactttg cttataccat      2280
     aatttcttga caagtccatg tatatcattt atgatattat ctcgttcatt acattcaata      2340
     tcgaataagg ataatggatt gtttagagtg ccaacggagg attctagaaa ttcattgtat      2400
     atatagaaaa gatcgtttgc tttaaaatat aaacaaccat ctataccctt aaaagcggtg      2460
     gaaacgttac gtggtattcc ggggaaaaca tttgatatat ctcccacata atcacccttc      2520
     aaatcatcac attcgtttat ttcatttaca aaaaaactat catatataac atacgttttt      2580
     cccttattcg cattaattac cgcatttaca ttaccatctc ttagcaaaga atgataacta      2640
     ggtcgtgatt ttaaacgtaa taccatatga tctaaaaggt aaacctgacg gtttgcgatt      2700
     aaaactatat cattgttagg acgttggtaa atggcagaaa ctttgacaaa atttttaggt      2760
     agaaaatcta accatctcat tatggataat ggtcgtgtaa agtctctaat atttcttaaa      2820
     ttcttctgca gaggtatact ccatactaat cgtctgtaga agaaataaat tcgtttattt      2880
     attaccagaa aattgtcaat tacattttta aattgacaaa tatcggctag tagcggttga      2940
     aaaggaggta ttggtttagg cgtcgtcgtc gtcgtcgtcg tcgtcgttgt aggttttgta      3000
     acagtcatct tcttctctcc atacaacaat tgtatagcat caatttctgg agtttgaaga      3060
     tcaatgtcgt caatgtgttt gataaaacct gggaaataat agtatggata cattatggaa      3120
     ttcttatgcg atgtatgttg taagcctaaa gcgtgtccaa tctcatgaat caaaactgag      3180
     tataaggata gctcgtcatc agcaggtatc atcagggcac cattccaatg ttcattttca      3240
     tctacatgta tctccacttg ttctcgatct tcactgggaa actcagcgtg tgctaagaca      3300
     ccgccaagtc catcaaaatc tttaaaacaa aaattccatc tatttgtagt gcaaagatgt      3360
     ttcctactgg caaaggaaat tgtaatgttt ggtttatgtt gatcatggtg aaaacctagt      3420
     ccagaatgtt ttgaccagag agaaaaggct ttctctgcta ctacaaaata tttaactgga      3480
     taaattgtcc aagttaaatt ttgtccaccc catttatatt tactactatc gaccatgaag      3540
     ggggtgaaat tatcttcaac accgcatcta gatctattca taaaacgtat tgtttcttca      3600
     ttctcctgcc catctgccgg tagagagtgt atagtctgga atagttttaa agcgctgcta      3660
     gctgctgtta aagaactatc atcttgattc aaataaccat atatttgtag ataattaatc      3720
     gtagagttgt tgtaggataa tgcgtaaggt aaacaaaccg taagaattaa gtaccttatc      3780
     atgttgaccg tatgcwgcgt agtttacaaa tgaatgagga aacacacaag gatcgatata      3840
     aatagaagac aattaagaga gagaaaaaaa atatatattt atttaaccat acaaagtgtt      3900
     taatgcttgc gaaatttcat gatctaacat agctgcgtaa ctacaaatgc atgtatcagg      3960
     cccctcttca caatcttcat ttgcccagac acaattcgcg tagtgacmtc catcagttgt      4020
     actcctttgt ttacattcct tggctatttc ctccaggtct ttaatggctg actcaacttt      4080
     cacaagtaaa gcagccttat cgaaatctcc aagatttact ttgatgctgt ctaaatcctg      4140
     tctgaatcgg ccgtataagg ggtgtgagag tatactctcc aagtgttccg tgttccatga      4200
     tgatgatgtt aactgtacga aaggtaacga gaaaatgaag gcgaaaatct agtattagtt      4260
     gactaaatcc tttgcattta tccaagatgg tttggggaac ccccaccatt tcacgtacac      4320
     cttatcatgt tttctacgca atatcttctc cacaagatat acatctttga atttagtttt      4380
     ctgtaattcc tgcgaataaa atgctccttg tataggttgt ttggacatat cttctaaaag      4440
     ataagtgtaa ggtattgtcc tgcgaacagc tacaacttta aatatttcag ctgaccaatt      4500
     tggtgtaaaa cctctggaga atacggttct atttttggaa atgcgaacat aatctccttc      4560
     cttaaaacgt ggttcacctc tttgcctcct cctcttcmtc gtcaatatct catgcgcgtt      4620
     actctgattc acttctgaag gtttcattcc tatggtacgg tgaactgtat tgttatactt      4680
     gtctattaga cgagataaat gaccaatata tttgtaacta ccttggaggc tgaataaacg      4740
     atacattaat cctttaaatg ttctattaaa tcgttcaaca atggcacatt taattttgct      4800
     aaatgtactg tagtgattaa tttgatatga tttcataagc tgcttgaaat gagcattgta      4860
     gaattccttg ccattatctg tttgaatatt ctctggaatg cgtccactac cgctaagaat      4920
     atgttccaaa gcttttacaa tatcctttcc tcctttggac tttaccggct ctacccaggc      4980
     aaacttggaa aaacaatcaa tcactgtcaa tatatacttg aaacccttat tttcacgcgc      5040
     gtaaggcagg aattcgatga gatccatttg ccatagatca tccaatcctt ttaaaatagt      5100
     ttgtcgtcta ggataatgca ctcgtgatgg tttgtgaagt tcatcaacta tttcctcttt      5160
     gatgtttgcc atcacgtttc tagaactttt ttcaacagaa aggctgtaac aggtgtatgc      5220
     ggcggcaata gacttattct attattcata acttcaaata tacgatttac aaaggtggtt      5280
     gtcgactgta gtcgagattg atcgtaaaca ttcaacaggt atgattttgt gaccagatct      5340
     tctctttcat tcactaattt tgtaacatat actctcatat attcctctaa atcagccagt      5400
     tttacataat agttttgaag gtgtctctta ttaactgcgt cataaatgtc caccggatcg      5460
     tctattccag tgagtcgttt atgtttaaag tcaacgtact cctcctcctc cttcctatca      5520
     acgtgcaatg gactctgcga ccacggtctg ccaaatttat ctattgtaga catgtgacct      5580
     gtgcaggcaa aactaatgac atttccgtag ttttaataga ttatattagc ttctmtcaac      5640
     tcctcwataa tagattctat ttcattttca tgtccgctat gacctgccag tttagaggca      5700
     aacagaatct gtaatcttgc gattaactcg tttggatcgt cccaatattc gtagatactt      5760
     tgaccttccc acattcccat acctgtcttt ttcttcaccg atctaaattg atatggcttg      5820
     gatggcggcg gcggtgaagc ctgtggtaac aacctatgct cagctcctcc ttctcctggg      5880
     tggaaaagag gtctaactat atttttatac ttccatcctt tactaccact catctgtttt      5940
     tcctcactaa actgttgttt atgagcatta ctcaattcta gaatattttt ataaacttgt      6000
     aaatcgtttt ccgtatatga tgtgggtctt ttaaggaata ataactgata taaacctggt      6060
     gtcccctcaa acaatttatt ttttatcaca agatcatttc catttatggt tacatttaca      6120
     tttccaatga ccattccacc ggttggtaat atacgaatgc cgtacctatc atctaaatcc      6180
     gacgccgccg ccgtatsagc agaagtgatg gatttatata cgtatggttt aagtagagga      6240
     ccaatacttt cctctccttt caactsttgc agcaatagag aatcatgttt tagaggcgtt      6300
     tcctcctcct cctcctcttt cttaacaggt tccactttaa ccattgcctc ctcctwcttc      6360
     ttcttctttt taactaattc ctgaagcggt gcagtaatag gtcgaaaact ggtttccaac      6420
     ttctcctgag ataactgcaa accacgtttc atacttttaa atttattacg caatatttga      6480
     gaagtttgaa taagttgttt agtaagttta gggtccatga ctggtwctga tgaagaggtt      6540
     sttgcaatca ctctatatat agataaatgt atctaatcct ttccgaaatc ttcccttgtt      6600
     tacatctctt gtcttatcaa tggctacaaa cccgtgaggc tcatcccaac aggcgtgaca      6660
     tatttgtttg aatttttcaa aggaaatatc cggcgaactt atatgatcgc tatagacatg      6720
     tcttaaattt aaatcatcct gtttgaatag cataataaaa ttggcattat cacgtattag      6780
     atgttttggt attcgagcat aactctgtgt caagtagaaa caatcaatgg atctgtgccg      6840
     actcatactg aaatactgtc taataacatc ctgctgatcc atagcaatgt catcgaaaat      6900
     aataatggag tttgttttag cctcttcagg cgtgggcacc tggttagtat cgtttactgt      6960
     ggaaaacccc acttccggca cccgtttaca aacctcttcc aagtataaat acttttcctg      7020
     ttgtaacgat ctgctacata cgtaaatatt ttcaaatttc aatccatttg gatgtagaat      7080
     taaacaggtg attaggttgg ttttacccga accagatgtt ccacagatca atgctcttat      7140
     actattcggc aagaggacac catgacgact ggccaagttc tcaacatcag gtagtagatt      7200
     ataaattggt aatcgttcac tttgtttctc tagacgcatg actagctcta tatataaacg      7260
     ctcacgtagc aaacactttt atcataatga gaaagaaaac cgtcgggaga ggacttataa      7320
     actcagtgat tgacaaacta ccatttgaag cacacattcc cggttataat tattgtggtc      7380
     ccggaactaa acttaaaaag agattatcac gaggtgggcg agaaagcagc agcctgggct      7440
     gttacaaacg ttatgaaagc taaagtgaaa ttgggtggtg gtaatgggaa acgtcgtaaa      7500
     tgtgtttccg ttaaagatgt gataaatgca gctcgtataa cttcaccgct attgtccatt      7560
     agtgatggtt caaagaaagc gctgagaaag gctaaacgtt acattaaaaa taaaactaaa      7620
     ataaggaaaa ttccaagagt gttaccagtg cctagaaccg gtggtattct accattttta      7680
     gtgcctttat ttgcaggact ttctgcgcta ggaagtttag ctggaggcgc tacggcaata      7740
     gctaaagcag tcaagaatac tcaagaggcg agagatcgtt tggaggaaat gagaagacat      7800
     aatagaaaaa tggaagagca gcatgttggc agtggatttt ttctcaaacc ctataaaact      7860
     ggttatggtt tagttaagaa agcagaatga ctacttcctc ctaccacaaa tatagatttg      7920
     ttaaaatttg ccaaagacat tcctcatttt agaggtgtat atatgcgcga caccctacca      7980
     aaggatatta aagcggatga atgcgccatt gtgaatttag attcaattag aaacaatggt      8040
     actcattggg ttgcgtatag taaaaaaggt aatgaaatca cctattttga tccatttgga      8100
     aatcttagac ctccattaga gcttttacgc tatttcaaaa actgtaaaat tacctacaat      8160
     cgtcagaggt atcaggagtg gaatacgcct tattgtggac atttatgttt aaactttctt      8220
     tataataatg cctaatctgg tgtagagagg tcagtcatgt cgttcacctt cacgctgact      8280
     ggtacatcca gtgtgcttag taatgacata tttcctccca ttgatctatc atcagaaggt      8340
     tacagcatcg gtttactcag cctacaatcc tacaactcta taccgaatat aattcaagat      8400
     gtaaacaata aatttcatta tggggatggt ggagtgattg aaattctcta ctggtgcgta      8460
     cgagattgac gctattgcgg actacctaaa gagaaacatt aaatctccag attttatcaa      8520
     aatcagaggt aatgtgaama cgttaaaagt tgaactaatg tgttcgcaam cgawccattt      8580
     caacagggaa cattccattg gtccgctact cggattcaca aaacawagag tgttggagaa      8640
     gatggcggtt catcagtctg atgaactagt gagaatacat aatgtaaata cggtggcagt      8700
     taattgtaat ttggccatag gttcctatag aaatggagaa cctggacata caatatatga      8760
     attttctcct acagttcctc caggttataa gctagtacaa gagcccagtc cggtcattta      8820
     tttcccagtc actggagaga gaattgacaa tattacgcta actctcacgg atcaagataa      8880
     caatatagtg gattttcgta aagaagtgat taccatacgt ttacatttaa aacagaatgg      8940
     gctttgatta ccaaaggaga aaaagtataa aaagcggtag cgttaggagt aaaccataca      9000
     gtactgctac ccgcaggacg aggttaacac ctgcaaatat caaatttcta cagagaatag      9060
     gattggtggt aaagcggcgg cggcagcggc gcaatggaag agatattaaa cgtgaatgat      9120
     gaagtagttt tcgacgatcg catcaccgac taccaatggc ataatcatat gcccattaat      9180
     agttcaatga acaattctga cgagatcatc atctccattc aacagcagga catattcacc      9240
     gttccttcaa agagttttct ctacattcaa gggcaggtga aaaaagaagc tgatcaagat      9300
     gttaaattag tgagaaatgc cttcttgttt ctctttgatg aaatcaaata tcagttgaat      9360
     ggagttttga ttgaccatgt ccgtaaccct ggaattacca ccactcttaa aggttatgta      9420
     tcttttacca gagacaaggt ggaaacattg gaaattgcag gatggaaacc tccaagtgga      9480
     tgtaaatcta gcgacgaaga gggaaatttc gattgttgca ttccactgga taccgtcatg      9540
     ggcttctttg aagattacaa tagaataatt ctacagggta gacatgaact tattctgcat      9600
     agaagtaaaa gtgataatga ctcaatgctt gccgctcatg cgactacaaa ggctaatata      9660
     gagatcaagt ctatccaatg gagggtaccg tatgtgaaag tgtctgatca acagaaatta      9720
     aagtttctaa acgttgtcaa taggggaaag accattccca tggcatttag atcttgggac      9780
     cttattgaat atccaaccct acctgcatct actaaacata catgggcttt gaaaactagc      9840
     acaaatttgg aaaaaccacg ctatgttatt gtaggatttc aaacaaacag gaaacataat      9900
     ttcactgcag atcctacaat ctttgatcag tgcaacatta caaatgtgaa actattttta      9960
     aattcacaag catatcccta tcacgaccta aatgtaaact ataacaaaaa ctactacagt     10020
     tccatatatt acatgtacca ggatttccaa aatagttact atggaagaga aaacaatcct     10080
     ctattgtgca aacatatgtt taaggatctt gcacccatta ttgtgattga ttgttcacgt     10140
     caatctgaag ccattcgctc atcctctgtt gatataagaa ttgagatgga atgtagtgaa     10200
     gccttcaagg ccaacaccac agcgtacgca ttaattttgc acgacacact ggtggaatac     10260
     tcccctctac aaggactagt cagacgtata taaaaccagt tttttttttt ttgtggggta     10320
     ttgctggata tataatgcgg ctgcttccag agagagtcag tcagtcagtt catcagttac     10380
     agcaatgaac ggtgtagtga tagatttcca ggcttttctt ttcaagaaaa agtacatcgt     10440
     caaggaggtt acacttatmg atctccttaa ttacacagta attgcgcatt ggctgctcac     10500
     gcctccwgag gagaagtwcg awgaaggaag aagttacccm aacaaatggc tggagagcaa     10560
     tctccatgcc wtagaatgga cgaaagggga cataaggtac gaaaamttta attcactaat     10620
     ccagsaggca acccaagatt tcagagcatt attcggaaaa ggatacgaaa agtgtaaaca     10680
     cttggggaat atccttggaa gagatgtcct ggacttgggc gaatttggat gtccgtcgtt     10740
     gcagaaactg ccaggggcca cattgtttga aatatgcgag gatactcatt cctatagaac     10800
     gcagtattgc tcgctaaagc aagcaaaaca gttggctttt tggatatctg caaatctgga     10860
     caaggtgaac ttggagcaaa tggatgcaag aattaaaacc ttcagcgatt atgatggtga     10920
     actggatgga aatctactcg ccatccacgg gttactacca ctaccggaaa acagttacat     10980
     gcttcttttg cggcagtgaa gtaaacatca agagggggag aaggaggatg tgcctctgct     11040
     gcagccattc acaagactgc gagtggaaga agacctgttt ataatatttt tttttttatg     11100
     taaatatttt tttaatatgt aaatatgttt ttaaaaaata aaaaatgatt atttgaaaac     11160
     ttgtcttttt tttggaggag gagaaagaaa aacacacttt ttttttttaa aaaatatttt     11220
     attttacaaa taattatggt gattacatag atgccttata acctatggct aatgtttgaa     11280
     cattgtctgc aaggatctct cgtttatcat caaatggtga taaagatacc ttgtttattt     11340
     cactagtatg cactacatgt ttctttgact ggattacact catcaaagtt tkatgttcat     11400
     ttttagagaa caaacagtct acataatctt ggaaacatat tgtcttttgc acasaactac     11460
     ttttaattcc tttcactttt ttawtatttc cccccctcta catcgatgga atacattttg     11520
     gctctaagcc ctacaaaacc tctaattatc tttcccgcca cttcatcttt aaatgtcccc     11580
     ataacttttc tatttttgat ggaataacag ggatggttgg cgggataatc agatgtgtcc     11640
     atataatcta ataaacttgt catatcttta taaaaatcct gtgtttttag gaaatatgtg     11700
     aaagagtcgg tatcgacata gcagagtttt aatctctcta taccatattt aggtaacatt     11760
     atgttgtagt gataattata cattacagtt tttgataggt ctaaaatgct cattcccaca     11820
     taaattggtt tgttgaatac aatacacctt ttagccatgt gaattgcggc caagttctcg     11880
     ccaattattg tacgatcaat gaaatccggt ctagctacta aacgttcaat tttcctcgca     11940
     ctagacacca attgaatgtt cacccgttta cgtatgttct ccattgtttt accaaaaatt     12000
     gcattattca tcaatttgaa aaagtctttt tcaaaatcat ttctagccac ctttctaagc     12060
     tcggcattaa attccacata cggacttaac catttagatt gattaaactt tagtacacga     12120
     ttaattttca ccaatttcaa accatgctct aacgcttgtc gtagagtaac gtaatgaaca     12180
     acataattac tacgcgtacc taaatgtgga actagcttct tgtgtttatt aattgtaata     12240
     gtttctggta gaaagggtag atcgttgtgt aacttgtgta gttggcttgg atattccaga     12300
     tcaacgtcca ggatatatcc aacatcatca tcatcttttg tagactctaa ggagaaagtc     12360
     tctgggggca cccattgaaa tcctccgtaa ggtagagaca ttgtcatagc ttttccatac     12420
     aaattcgtac agtcttggta agatataaat gtactctcct tattcgcatc ataatcagtc     12480
     atgtaatggt tgttggcgmg agcgtaccta tgtgawacct gacagatacc tcctctgatc     12540
     cctctctcga gtagcagtat catatcgtag tcggtcaaca gttgtagacg aacgtttgta     12600
     aattttagca ttgcatcaaa tgttaatcca ggagctgtat agtaatgaca tggatccagt     12660
     ttgtgatttt tcaacgtaat tgtgcgaaaa ttttcaaaaa cagaacataa ttgaagagtg     12720
     tctaagagaa ggtaatgatc tgcatattgt cccaaagttt taaactggaa tgtattccac     12780
     acattaactg catgttcata atcctcttgg ctaatgccac tttgattaag cctgctatag     12840
     aaactttctt taggcggaag tgaggtctct tcaagtttgt tccaatcggt tatgtattca     12900
     tagggaaata caccttttct agtcagtaaa tctgcatgtt ttgaggggaa aaatctattc     12960
     acttcttcca actctgagag atttctcact agagaatcta gactggatgg catgaagcga     13020
     aaagtgtcca aaaatcgcag ttttattcta ccaccgttga tacttttaga gaaggaaata     13080
     tacttttcac tactacttgg tatcaagtca atagtctcct cgtcaaagcc caactcttta     13140
     acaataaagt gactatcata accgcttaaa ttatgcagca ggacgggtat aaaagtggga     13200
     ttttgaatcc ttaaattgca ataatcatgc gcagcacctc tatatttaca agttatatga     13260
     caatgatccc tcacctttgt ttgcccttcc tctatttgct gattgcatag atgacaggtg     13320
     cgtgcgcttt gaaaagacaa ttcctcttct tcacttatat ccatggcagt atttggaagt     13380
     gaatacaatc ttaatatctc ttcagctatt ctttttaaac attctacaaa atgtgctgct     13440
     gcatttccac ctctgtagat gtatggtttt ttgggtaatg atgagggtac gtcacacact     13500
     tgcgcagatt ccttcacata aatacaaaaa ctcataggaa tatgtttact ataaatgttt     13560
     gtatacgtat cttgaggatt aggatcacac ccaatcacag gttgtaatat tgcctcaaaa     13620
     tctgcataaa tgacgtacgg cacccgcagc actcgctcca catgttcaaa ttggaggtag     13680
     ggctttttca caggcatctc gattcttgca acctggtgtt cagtgcagaa tctggaatgt     13740
     tcatttagtt tttcctcagc cgactctcca tttagagtct gataatgtgt gaaacaccgt     13800
     ttacacactt ttatcccaca tttccgtcta gttttctgca aacgtatcaa tttgtcaaaa     13860
     ttcttcacat acacataatg agttctacct tcatcgtcgc taagcaaaag taaatcccta     13920
     tgatcagcta gttcttcttt cacaaccttt aaagggaata aactattatt ctcttcaaga     13980
     ccgaatacgt ttatggaaat attattcatt ttttcaaata tcggtatgct agagagcgga     14040
     gttggaaatg ttatgcaatc aaaattatag ccatgcacta aatttttgta tttactcatg     14100
     cgtgcagcat ccttggtcac aagttttgcc agtatggaat atctaaaaca ctcaaagtca     14160
     ttatttttaa cattgatgca agcctttttc ctctcaatca cttccggtaa tgctatgtag     14220
     gaactgccct tgaaggagag cggcgaatac ttgttaattc gtagccgaag gccattgacc     14280
     tttttcaatg accatccgct tttcttcatt tgagcttcct ccttttccac aatkattgag     14340
     gcaaattcct catctacaaa ctctgctama tctgtagctt gaaacaccgg cttgtttttc     14400
     gtcttaaacg atctatcagt ttcctcatcg agagtattta caaaaacaca ttccaccatt     14460
     atgttaactt taattgcagt ataactttca agtagttttt taattttgtc tataatttta     14520
     cctctaatgt ttgagagaaa ttcatgcaga tcttgacacg taacgcagct aaagaaccaa     14580
     gatttcaatc tatgtttaaa cgccgtttca tactcaatct cttcacgttg ctcagaatat     14640
     aattcatctt ttttcggttc ccataggtgg aacttcttct tcttctcttg gttcctcagg     14700
     acaagttgtt tcatgtcttg taccatttgc atggctgaga aattttttcc tacaatattt     14760
     acaagtatag gattttgaac aagttagtct atgccgtgtt aaatttttcc cactactaaa     14820
     agacttttta catasttcac attgagctgc tgctgcaagt tccatgtttt accacggact     14880
     gacggtcaaa aattttttta ctttatttta ttctttaaaa acaagacccc acccttcttt     14940
     aaaggcacgg tcaagaatca ttttgtctaa ttgcttatca caaaaaccac atgactgggc     15000
     aggctgaatt gtcaccaaca aggacttaca taaggagcat tttatatttt cccttttttt     15060
     cgaacgttta cgtaaaatgt gagtactttt gaggtctaag aggtcacaaa catcatacga     15120
     ttctgcacaa tcgtcacata tgtttccgtc ttttttagtt atgtacacac tatacctaac     15180
     acatacataa ttatctactt ctaataagtt ctctgaattc ataattgttt tacaagagta     15240
     aagaaagaat aaaaaaaaaa acccttcacc taaaaaacgc gtctagaata aaatatatat     15300
     tttttacaag aataaaaaga aaataaccct tcacctaaaa cgcgtatatt ataaaacatg     15360
     tcttgacgag tcacacctaa acgcgtctat atttgacatc tattctgtgt cttgacgcac     15420
     ccacaataga catgtcttat tacgttttaa ttattcttct tcttcctctt cctcttcttc     15480
     caacccgcct gcgtttcttt atcagccaca gttacaaatt tgtataactg ggaccctcct     15540
     ttttccccca gataaatgag gttaagatta cctttataac tgttaattag ctgttcatcg     15600
     attgcctgaa gaatcctctt gggcaggaag agatgtgcga tcccctggtc gtatgctata     15660
     gtcactctca atgacttccc gtacctggtg tccagcactc ctatctcctt wattctatac     15720
     ttccttccts ttattaaatc tgctggtttt atgtagattg cacctttagt gctcgcagaa     15780
     ttgagtgctt gacaaagatc cctagccaca aaaaaaaaac aaaatactat tgaactttat     15840
     acatgtctga acaattaaac caaaaaaaaa caaaaaaaaa aacaagaaaa ttatttctac     15900
     ttacattatg gtccggtatg gtgggcaggt gttgtgcaat gtcttccatc taaacccggc     15960
     ctatttatac acgccggaga accccctctc taagacttgg aataaaagta aaaaaccaac     16020
     cggagcaatg ttcgtaacct tgkttagagt tggatgtgca aaccacttaa aaaaaatact     16080
     gtgtaacatt gacaacgatt tccaatttaa attctaatct aactaccgcc acatgacggc     16140
     cgtaagattc aaatttattg ctctaaaatg gcaagagttt ttaccatacc ataataaata     16200
     tgtttcttta agataaaata aatatatcct gtttattata cwcgccggta aaggaattaa     16260
     gactttggag taaacaaaac tataaattat aactggtggg aaaaaccctt ccaacagcca     16320
     ctgtcgccta cgtaacctta acatttaaaa accggatctc aacaccaccg gtgcataacc     16380
     ctctgtgcac gaacatgttc cagcagcgcg cacacctgca ataacactgt cgcctacgta     16440
     accttgacat ttacaaaacc ggatctcata taggtaagat tttagattgc tatgctatcc     16500
     acgaagcagt ttcaacgacc ccctctcctc caattatcat cttaaccaaa tatatcctgt     16560
     ttattatact cgccggtaaa ggaattaaga ctttgaagta acaaaactat aaattataac     16620
     tgctgsaata accctgccaa cagccactgt cgcctacgta accttgacat ttacaaaacc     16680
     ggatccccgg cccacaaaac ttgaatcccc accacagaga accgaccgca aaacataaga     16740
     ttcacatctt tcatawccat acacaagact accactatgg tcaaggatgg taaagcgtcg     16800
     gcttttggtg cccagagtcg tcggatcgaa tacaccaggt aaaaatawtt ttttatttct     16860
     cactggctca tttgctctca ctkgccctgt ctggaggagt tgggggtggg ggtagagggg     16920
     gactacctgc acaatgttta gggagagggg taaggataac gtaaaccgga ggcggctggg     16980
     gggcctggct catttgcccc tgcgccagga tccccacttt atatctact                 17029
//
ID   Polinton-2_TC repbase;    DNA;    INV; 16981 BP.
XX
AC   .
XX
DT   15-MAR-2006 (Rel. 11.02, Created)
DT   15-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   A family of autonomous Polinton DNA transposons - a consensus
DE   sequence.
XX
KW   Polinton; DNA transposon; Transposable Element;
KW   Interspersed repeat; Maverick; Tlr; Polinton-2_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-16981
RA   Kapitonov V.V. and Jurka J.;
RT   "Self-synthesizing DNA transposons in eukaryotes.";
RL   Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006).
XX
DR   [1] (Consensus)
XX
CC   This transposon is characterized by 225-bp terminal inverted
CC   repeats and 6-bp target site duplications. The consensus sequence
CC   was built based on multiple alignment of several copies that are
CC   >90% identical to each other. It encodes a family B DNA
CC   polymerase (POLB-2_TC), retroviral integrase (INT-2_TC), ATPase
CC   (ATP-2_TC), cysteine protease (PRO-2_TC) and one unclassified
CC   protein (PY-2_TC) conserved in Polintons from different species.
XX
FH   Key           Location/Qualifiers
FT   CDS           1834..2235
FT                 /product="PRO-2_TCp"
FT                 /translation="MVSEKKLPVKLPRHALTNIEIIKFARLLQIPNFRGVY
FT                 MRNKLPKIIHKNETGIINLDEEKNSGTHWTAYVKNKNNILYFDSMGNLKPP
FT                 TEIINYFKSDNDGNNITYNYDGYQKMGSYNCGQLCLKFLYRHTCKL"
FT   CDS           3082..4287
FT                 /product="PY-2_TCp"
FT                 /translation="MFDIEKGIEWDEGVVGYKFQSHEAYTARYENTDEIRI
FT                 PLQEDLCTLPCDSLILIEGQLVKTDATTNKTVPATETKFVNNGVAFLFSEI
FT                 RYEVSGVTVDTNTKPGITTTMKNLASLNQSESLKLTMSGWDLNEEATKPID
FT                 GYFQACIPLNRLLGFAEDYKNIMLNIPQELILIRSNSDVNALICATNEKAR
FT                 VVIDKIAWLVPHIVPGLKEEVKLTKTIEKDKEIAVPYRSWELHSLPLFPNT
FT                 TKCSWPVKISTKFETPRYIIFGLQSNREGQLDKNMSKFDRGDITNMRVFLN
FT                 NERYPYENLNISYKKHHFGILYEMFTNFRSRYYYTDKKETHITPTQFFDSY
FT                 PLIIIDCSMQKTGLQTQSIALRIEFDTDTGISEGTTAYALVISDRAFTYTP
FT                 LTKSVKQV"
FT   CDS           8033..11146
FT                 /product="POLB-2_TCp"
FT                 /translation="MKRAIVNVQNQDIHCFGWSVVAAVCLPMGPEHLPSSY
FT                 PHWSTLFNFQGIEFPVKLDSIAKFESQNNVSINVYGLELLYVNNKVKFEIV
FT                 GPLYFTNFKKPVHINLLLLSDNDGNQHYCTITNLPRLVSSQLSKHHHSKFF
FT                 CDGCLQYFTTQALLDRHSSTDCGKLYARIPNNELITNRFGYNVPANVLEFQ
FT                 NYHHKMTIPFIVYADFECLLKPMSTVAPNPNQSFSIKTFLHQPYSCAYYIK
FT                 CSYNDQLSKFQSFRGQSSVVDFITALEIDLIEIYKKYLSIVQPMLPLTIQE
FT                 EFDYLTATECHICQKPFQQNDIKVKDHCHLTGRYRSAAHSNCNLNFQIPNF
FT                 IPIVFHNLTNYDSHLFIKELALEESEINILGKTKEKYITFSKKICVGEYLN
FT                 SNNRIVKEHLHLRFIDSFQFLACSLEKLAAALDDAQCMEVKRYFPVDREFQ
FT                 LIRQKGVFPYSFIDDFSKLDLTELPQKIDFYDKLRDEHISEDDYQRANTVW
FT                 DTFHCQTLGEYSDLYLKSDILLLADVFENFRNMCLKHYELDPAHYVTAPSL
FT                 SWNAMLKFTHVKLELLTDIDMLHFFKKGIRGGVSTCVKRAAQANNKFLPNY
FT                 DPSKPTSYILYLDATNLYGWAMSEVLPLGGFTWLTQDEINSLSIMDLTDTT
FT                 PEGYVLEVDISYPHHLHNSHNDMPFLPENLIPPNGKCAKLIPNLCAKTNYI
FT                 IHYRNLKQALQNGLELTKIHRVLKFNQSSWLKPYIDLNTKLRNQTKNKFEK
FT                 DLFKLMNNSVYGKTMENVDNRVDIKLATHWKKNGHKYGAETWIAKPQFKNC
FT                 SIFTENLVAIEMNKVQVTYDKPIYVGFSILEISKTLMYDFFYNFLKVKYGN
FT                 NVQLLYTDTDSLILEIYTENVYNDIKQNIDRFDTSNYPENNIHDIPKTVSI
FT                 IGKMKDEYAGVPIVLLYGTGAKAYCVQTVNDLIKKAKGVSKHVIDKSLTLL
FT                 QYRAIATNPSSSSVFCVMNVFKSYLHNMYTELRNKIALSNFDDKRYILGNS
FT                 IDTLAWGHYDIDRDRNLDSLIRELQKYVEPTD"
FT   CDS           11237..11968
FT                 /product="ATP-2_TCp"
FT                 /translation="MCKVFLFVFCKSTMKLVQQKDLLKISNHDYSVCVPYQ
FT                 HFPKHNTLFNNSVKRGLVVGRSGCGKTNVILSLLLHPNRLRFTDIYLFSKT
FT                 LQQPKYQFLKSVLAPLDKVGYYEYEDGAEIPPPKEIKPYSIIIFDDVVTCN
FT                 QNIIRDYFCFGRHYNIDCIFISQTYSSIQKQLIRDNANFIIIFPQDVLNLK
FT                 HIFNDHVGTDMSFETFQKMCSQCWQKPYGFVTIDKDAEQDNGRYRNGFDQF
FT                 IKI"
FT   CDS           13634..14575
FT                 /product="INT-2_TCp"
FT                 /translation="MKRSDLNIKRQVVNELHAPARVNFKRRRVIVKGLNDL
FT                 LQLDLVEMIPYSRVNKGFKYILMVINVFSKFVWAVPLKNKSALSVVNAMSE
FT                 ILKTRRNVPKNIQTDLGKEFYNKHFQQLMNKYKINHYSSYSNLKSSVVERV
FT                 NRTIKGMMYKEFSVQGHYNWINILPDIIKKYNNTRHRTTGLKPISINKKNE
FT                 RKVLDQVYSHLKTMDIYKPKFKVGDFVRISKHRHLFKKGYTPNWSNEVFTV
FT                 SKIQNTNPRTYLLQDVSGETIRGGFYTEELQKVKYPNVYLVEKVLRKKGNR
FT                 LFVKWSGIDKTHNSWINSSDIT"
XX
SQ   Sequence 16981 BP; 6035 A; 2811 C; 2839 G; 5293 T; 3 other;
     agtagataac gaatgggggg acaacacaac acaaccttga ccttgagttt gaccccgccc        60
     attttccctc tctttctttc aaggccactc gttctctctc ttactttttc aaggccaacc       120
     cctcccactt cccccaccac ttcaaggcca aggcattatt ggaccttgat gttttcaagg       180
     tcaaggtcat tcatgttact ccccactttt gcaaggccaa caacttccct ctttacttat       240
     cattcaaggt cactgcagct aatatatata gaattcaata caaattcaaa aacagtatct       300
     aataagtatt tctcaatatt aaagtagtaa aaaaaatgtg gtatcgtttt acttgtgaag       360
     gtgtcataat agtggaagaa acgtgtttcc acaaccagtt aggacacata tctttggaag       420
     gtggttggga acgtttcttt aatagagtgg ttgtgtgtga acagtgcagc actaaggaca       480
     tttctattat taatccagat gggtggaata attctttaag tattgacatt acgtgtaatg       540
     aagaagaatt taaagagtta cttagaaaat atggtttcct ttgtcataag tgtaaaactc       600
     cgtgttacac agctagccaa gtggatccgg aaaatgccca aaaaattata gctatatacc       660
     actaacttaa atcagcataa tggaagttga caatggtatg taatatgaga ttgtatgtac       720
     ttgtagaaat taagttttaa atgttttcag atccttactg ctacatgctc ttttgcctgt       780
     ctccaaagga ctgtagtaaa agaaaattct tttgtttaaa atgtgtgaag attatggcag       840
     tgagatttca catttgtcat ctacatgtga cttcagtgtt aaactacaag tgtttttggt       900
     gtaatacagt aataggacag aattctcagt tgtgtggaaa taatttaata aacaaaatga       960
     ctgttaaaat atggtatttt agtagagagc gacaaatgat gttttatgat tctgatgact      1020
     atgattctga cgactcatca agtagctgtg atagtggtat agaatgttag ttagttaata      1080
     agagtagaaa ttaaatataa acaacttgta accttagatt aaattagtat ctagattgtt      1140
     cttttgctgt atggataaaa gtaaataaat gaagttatat aataaacaga cttgtgattc      1200
     tcaacatagt attgattcaa ctctgacaaa gagaggttgg ggtctaataa ataaattaat      1260
     aaataaatta cccattgaat tacatatacc gggttatcag ttttgtggtc ctggaaccaa      1320
     attacaagaa cgaattgcac ttggacatag tggtagaaat aaattagatc aggcttgtaa      1380
     agaacacgat atatcgtacg ccaacgaaac taatttgcaa aaacgacacg aagcagataa      1440
     gttattatta agtaaagcag ttgaacgttt aaaagcaaaa gacgcatcgt ttggggaaaa      1500
     agcagctgca ttagcaattg ctggtataat gaaaggcaaa gtaaaattcg gaatgggagc      1560
     taaaagtaaa aagggtaaaa aaaagaagac aaaaaaacaa cgagttctag ttgctcctaa      1620
     atatggtggt tttttaccat tcctattacc actattaggt gctctaggcg ctttaggagg      1680
     aggagctgca gggatagcga ctgctgtaaa taaagcttcg gtagataaaa aaatgttgga      1740
     ggaaactatg cggcataata aagcaatgga aatgagtagc ggtaaaggtg taggaaaaac      1800
     taaagggaaa ggtctttaca ttggtccata taaatggtat cagaaaaaaa actcccagta      1860
     aaattaccac gtcacgccct cactaatatt gaaataataa agtttgctcg actattacaa      1920
     attccaaatt ttagaggtgt atatatgcgt aataaattac cgaaaattat acataaaaat      1980
     gaaacaggaa ttataaattt agatgaagaa aaaaatagtg gaactcattg gacagcatat      2040
     gtaaaaaata aaaataatat attatacttt gatagtatgg gcaatttaaa acctccaaca      2100
     gagattatca attatttcaa aagtgataat gatggtaata acattacata caattatgat      2160
     ggatatcaga aaatgggttc atataattgt ggacaattat gtttaaagtt tttatataga      2220
     cacacatgca aattataagt ttagtcgaat caaagatgct gtttgtatta acaggaaaat      2280
     cagcgatact aagtgctgac tttaatccac cgattgatgt tagtgatggt gtctatgaac      2340
     tgggtgttac aaattttgaa gtctacaaca gtataccgaa tattgatgaa gaaaataata      2400
     aattcttttt cggggatgtc gaatttaaaa taccgaccgg ttgttatcaa ttaaccgata      2460
     taaacaacta tttacaacat gtaattgaaa aacaattcag taatgacctc ttatctatta      2520
     ctgcaaacaa taatacatta catacacata tcaaagcaac aaaagatgtt gactttacca      2580
     aaccaaatac tatcggacca gtgttgggat ttaatagtca aatagttcca aaaaatattg      2640
     gaaaagattc ggataatatt gcagacataa tgaaacttaa ttcgattatg attgaatgta      2700
     atattacaat tggaagtttt aaaaatggag aacctgtaca cataatttat caattttttc      2760
     caaacgttcc acctggattt aaaatagtac agtcaccaga tcatgtgatt tacctaccca      2820
     ttagtgttaa aactatcaga aatattacac ttaaaataat agatcaagat gaaaagttgg      2880
     tcaattttca acaagagact gtaacagttg gattacattt gcagaagaaa gaagaaaatg      2940
     ggtattagtt ttagaactga ctcatataaa aagcaacaaa agtgtagaaa aacagttagt      3000
     acgaaacgaa acgtgcaaca attaagtaat aaaaataaac tgtttctaaa atcattagga      3060
     tttgaattat acacataaaa aatgttcgat attgagaagg gtattgagtg ggatgaaggt      3120
     gtggtaggtt acaaatttca aagtcatgag gcatatacag ccagatatga aaacacggat      3180
     gaaattcgaa ttcctttaca agaagatttg tgtacactac catgtgatag tttaatttta      3240
     attgagggac aattggttaa aaccgacgct acaaccaata aaactgtacc agcaacagaa      3300
     accaagtttg taaataatgg tgtcgctttt ttgtttagtg aaatacggta tgaagtaagt      3360
     ggagtaactg tagatacaaa cacaaagcca ggtattacaa caactatgaa aaatctggca      3420
     tcattaaatc aaagtgaaag tctgaaatta acaatgtctg gttgggatct aaatgaagaa      3480
     gccactaaac ctatagatgg atattttcaa gcatgtatcc cattaaatcg actattagga      3540
     tttgcagaag attataaaaa tataatgcta aacataccgc aagagttaat attaattcgt      3600
     agtaatagtg atgtcaatgc attaatttgt gcaacaaatg agaaagcacg agttgtaatt      3660
     gataaaattg catggctagt tccacatatt gtgcccggtt taaaggaaga ggttaaattg      3720
     acaaaaacca ttgaaaaaga taaagaaatt gcagtaccgt acagaagctg ggaacttcat      3780
     tcgctgccac tctttccaaa tactacaaag tgtagttggc ctgtgaaaat ctctacaaaa      3840
     tttgaaacac ctcgttatat tatctttggc cttcaaagca atagagaagg acaacttgat      3900
     aaaaatatga gtaaatttga tagaggcgat ataaccaata tgagagtatt tctaaataat      3960
     gaacgatatc cgtatgaaaa tttaaatatt tcatataaaa aacaccattt cggtatatta      4020
     tatgaaatgt ttacaaactt tagatcccga tactattata cagataaaaa agaaacacac      4080
     attacaccta cacagttttt cgacagttat ccactaatca taattgattg ttcgatgcaa      4140
     aaaactggtt tacaaacaca gtctattgca ctgagaattg aatttgatac agacaccggt      4200
     ataagtgagg gaaccaccgc atatgcatta gtcattagtg accgagcctt tacatataca      4260
     ccgttgacaa aatctgtaaa acaagtctaa attaatatta atagtaatgg agaacgaagt      4320
     gattatagac gttcaaggtt acaaaattgg aaaaaagttt atagttaaag aactggctgc      4380
     tttaagagga gacaaactcg cacactatgt ttttcaaccc cctttccctt cacaactttt      4440
     gaatcctcaa gatgaaaaac aagtaaaatg gttaatgaag aattatcatt gtattgactg      4500
     gaatatggga catattccat attggaaaca cgtacaagtt ataaacaatg tgttgaagga      4560
     tgttgacaaa atttacgtaa aaggaagaga aaaagccgaa tttttgaaaa aatatacaca      4620
     taaacaagtt attgaatttc cacaacaacc aacattacac gccgataaag ttaaatgcat      4680
     gtaccatctg aacgataacg catattgcag tctacataat gtattttttt taaaacaaac      4740
     atttcgttaa aagtgtacaa aacattgtgt taataatctc aactcatcag tctattggta      4800
     atcatggatc aagagagttg gataacgtgt cgtaataatc caggacatcg cctgaaagta      4860
     aaacatcttc gacgacattt acgaagatgt cttccacaac gtgaatattc ttggaggagt      4920
     tttgattgcg gaaatgggaa ttattttgat tcatctttat cccataatac taataatgat      4980
     tatcaacaat catcgagaag caactttgaa aatacaaact cttcaaaaaa tattttttgt      5040
     aatgaaatgg aatattaatt gaattaataa ttaattgtag tatttataaa taaatgttat      5100
     aaatttataa acatttgtat ttttttcata atatttacca ctcccttaca cattcaataa      5160
     tccttataca ccacccaaaa aaaaattcat ttcatttata aaaaagagtt gattattgca      5220
     gtggatataa gtgatttttg tcatttttca ataaattaaa caggttaacg atgtccttga      5280
     aacaggcggt tacactccat cctgtctaca tagggcttct ttttacattt ttttgtatca      5340
     atatgttaac cttgatggaa tacaccaatg tagttgcatt aagtgcatac aaagaagttg      5400
     accttgacgg gagctttcaa caatttataa aattgcaggg agtgcatgca gaaattcatt      5460
     ctgtgttgta caggtagtct gtgtacgaaa taatgtgttc aaattatttt gctaatttta      5520
     aaccgtgtac tcatggtgac gagtgttctc agtgtcccgg tccctcaact aggacaactg      5580
     taagtaacca gtcatcaaag ttattattta aagtattgaa gggaaaagtt gcaaatccct      5640
     atcaaaaccg tagtggtttt aatagggata aacctagaat caatatcgtt tctgatgtaa      5700
     ttattagacc tgctaattca aaattaatca aaaatgatga gacacaattt gaacaatttg      5760
     tcaagtcgtc tttaagtcaa tatttgaggg aagattgtct tgaagaggat gtgattgaat      5820
     gtagtcagtt aagtgtgaaa gagaagcaat tagctaatca cgctgttgct aatattgttc      5880
     aaatcgttga tgaggatgat gatgattcta tggttactcc ttcatcacaa cctgatagtg      5940
     aattatcgtt ttctttacca ttcacgcaat acctggctca acatggtatt gaaaatgatt      6000
     attcggacga catctcgttg accttaatag accagtttat taacgaagac gaggcggcgt      6060
     ccaatccggt tgtggatgaa ggaacttgtc ccatcaataa ttcggttacc gatgagttaa      6120
     atgtatttga taatgatatg gtggtggtgg tggaagaacc cccaatctct cccagtccac      6180
     cactaccacc acaaagcccc ttcgttgagc cagtgtttac ccgccccgtt acaccaacat      6240
     ctcctgaagc ggcacccgcg gtattaactc aaccccctat gataatatcg caggacatca      6300
     ttgacgcttt atcggagcct tgggttgagg tggaaaacat tatcaatggt aacgttgaac      6360
     atccccctca acccaattca ccgattattg aggaaaatga tgttctgcca gagagattgg      6420
     tggtggtaga ggccgaaaat aacatcattc ggtcaccaca accatcacca ccaccgtcac      6480
     ccataatatt atcacagggc gtcaatgaca tgcaacaacc atctggatcc gaggttgatg      6540
     tggaacttaa cattatcaca ccaccactcc ctcatcctcc tgcaacgttc gatccgatga      6600
     gtattattac tcaaaatgtc attgacgcac tggcagagcc gtgggttgaa gagaggaggc      6660
     agggtgaaga gatggatgtt gaaaatgaca tcattcaacc ctctcaattg tcacccattc      6720
     tagggcaaat aaataatagg attgagaata gggtggaggg tggagacgtt gatgtcgaaa      6780
     acgaagacaa tgacgacgac gacgacatca ttccacccac tccccctcac tcacgatcaa      6840
     ggaggcgtcg gcgccctaga aagcctcgta gacgttcgcg aaagtcgcca ttaatattaa      6900
     ttattaataa ttataatatt aatattaata ttaatgatgt taatattaat aattaatatt      6960
     aataaatcct atttccatcc cacactcata tcaagtacat ttaattcgga cgcgattttc      7020
     caaattttaa catcatacta cctacaacac gatggcaagc atgctgctcc tcctcgaggt      7080
     cttgctggat acctatctct gaacacaaaa aaatatatat ttatatagta taaataaaag      7140
     tcattcaaag atagtaacag aaggcagcaa atttataatt aaactttgtt agtaacctgt      7200
     ttaatttatt gatttatatt ttcataagaa aatgcatcac tgtgaaaact gtaataaaca      7260
     atttacaacc cgtcaatcac gactacgcca cgaaaagctc tattgtcaag tggtcaaaaa      7320
     acaggaaaat ggaggaccgg ccgccaaaaa acagaaaata tgtcattcaa ctggtaagtt      7380
     ttaactaata ggtactctat ttttcaatta tttttctttt ctagctagca acaattatat      7440
     gtgcgttaca tgtaatcaag aaattgctcc aaagcttatt acggcccatg agagaagtag      7500
     acagcataga aataattgtc aaagtactcc cttggaggat ggggtgtttg cactcagcag      7560
     tgcatttaaa tcacgcatcg cttcatatag gatttgtgat gagggccatt atatcgattt      7620
     aaatgaattt atggataaaa ttcacaataa attacttaga cttattgttt cacaaattga      7680
     aaaatttagt acaatcaaaa taaatttgga attatttgga ttgtatacca ttgagtcaaa      7740
     aaatatattt gatgtaaaat ctttcaatac tactaacaga attgtcactt taggcacgaa      7800
     tattaggaat atgttgcatg actttcaaga agttattagt caaaaaatga tggatttttt      7860
     ggaacgagat tcaggtagtt atatattgta aaaatcttta taatacaatt attttttttg      7920
     cttctttgtt ttaggctgga cacttgtgaa aatcttacat ttagaattaa atgtaaacta      7980
     ttacaatcca ttgaaagctt catcgtatat cccactaccg ccaagcgtga aaatgaagag      8040
     ggcaatagtt aatgttcaaa atcaggatat tcattgtttt ggttggagtg tcgtagcagc      8100
     agtgtgtcta cctatgggac cagaacattt gcccagttca tatccacatt ggtcgacact      8160
     ttttaatttc caaggtattg aatttcctgt aaaactggat agtattgcaa aatttgaaag      8220
     tcaaaataat gtctctatta atgtttacgg acttgaatta ctttatgtaa acaataaggt      8280
     aaaatttgaa attgtgggac cattatattt tacaaacttt aagaaaccgg tacacataaa      8340
     tttattattg ttgagtgata acgatggtaa tcaacattac tgtacaataa ctaatttgcc      8400
     acgtttagta tcttcccaac tctcaaaaca tcatcattca aaatttttct gtgatggatg      8460
     tctacaatat ttcacaaccc aagctttatt agatagacat tcttcgactg attgtggaaa      8520
     actttatgct agaatcccaa ataatgaatt aataacaaat agatttggtt ataatgttcc      8580
     cgctaatgta ttagaatttc aaaattatca tcataaaatg actatcccat ttattgttta      8640
     tgctgatttc gaatgtttat tgaaacctat gagtacagtt gcaccaaatc caaatcaatc      8700
     attttcgata aaaacttttc tccatcaacc atattcatgt gcatattaca ttaaatgttc      8760
     atataacgat caattatcta aattccaaag ttttcgagga cagtcatctg tggttgactt      8820
     tattacagca ttagaaatag atttgataga gatttataaa aagtatttaa gtattgtaca      8880
     accaatgctt ccattaacta ttcaagaaga gtttgattat cttacagcaa cggaatgtca      8940
     tatttgtcaa aaaccttttc aacagaatga tattaaagta aaagatcact gtcatttaac      9000
     gggtcgttat aggtccgccg cgcacagtaa ttgtaacttg aattttcaaa ttccaaattt      9060
     tattccgata gtatttcata atttaacaaa ttatgatagt cacttattca ttaaagagtt      9120
     ggcccttgaa gaaagtgaaa ttaatattct tggtaaaact aaagagaaat atattacatt      9180
     ttcgaaaaaa atttgtgtag gcgaatatct aaattcaaac aatcgaatag tcaaggagca      9240
     cttacacttg cgttttatag atagttttca gtttttggca tgttcattag aaaaactggc      9300
     agcagccttg gatgatgctc aatgtatgga agtaaaacga tactttcccg ttgacagaga      9360
     atttcagtta attagacaga aaggggtttt tccatattca tttatcgatg atttttctaa      9420
     attagatctc acggaattac cacaaaaaat tgatttttac gataaacttc gcgatgagca      9480
     tatttctgaa gatgattatc aacgagctaa taccgtatgg gatacattcc attgtcagac      9540
     tctaggcgaa tattctgatc tctatttaaa aagtgatatt ttactattag ctgatgtctt      9600
     tgagaatttt cgaaacatgt gccttaagca ttatgaactt gatccagcac attacgtgac      9660
     agcaccatct cttagttgga atgctatgct taaatttacc catgtaaaat tagaattatt      9720
     gactgatata gatatgttgc attttttcaa aaaagggatt cgtgggggag ttagtacatg      9780
     tgttaaacga gcggctcaag caaataataa atttcttcca aattatgacc cttcgaaacc      9840
     gacatcatac attttatatc tcgatgcaac aaatctctat ggttgggcta tgagtgaagt      9900
     actcccttta ggtggattta cttggttaac gcaagacgaa attaattcac ttagtattat      9960
     ggatttgact gataccacac ctgaaggtta tgtccttgaa gtagatatct cttatcctca     10020
     tcatttacac aactctcata atgatatgcc atttctacct gaaaatttaa ttccaccaaa     10080
     cggaaaatgt gctaaactca ttccaaatct atgtgctaaa acaaactaca taatacacta     10140
     tcgaaattta aaacaagccc tacaaaatgg actggaattg acaaaaattc atagagtact     10200
     aaaattcaat caatcgtcat ggctcaaacc atatattgat ttaaatacga aattacgaaa     10260
     tcagactaaa aataagtttg aaaaagattt atttaaactc atgaataata gtgtgtatgg     10320
     aaaaaccatg gaaaatgtcg ataatcgggt agatattaaa ctggctacac attggaaaaa     10380
     aaacggtcac aagtatggag cagagacatg gatagccaaa ccacaattta aaaattgttc     10440
     tatttttact gaaaatttag ttgcaataga aatgaataaa gttcaagtaa cgtatgataa     10500
     acctatttat gtaggattca gtatattgga aatttcaaaa actttaatgt atgacttttt     10560
     ttataatttc cttaaagtta agtatggaaa taatgtacag cttttgtata cggatacgga     10620
     ttcattaatt ttagaaattt atacggaaaa cgtatataat gatattaaac agaatatcga     10680
     tcggtttgat acttcaaatt atcccgagaa taatattcat gatattccta aaactgtgtc     10740
     tattatcggt aaaatgaaag atgagtatgc tggtgtacca attgtactac tttatggcac     10800
     cggtgccaaa gcatattgtg tgcaaacagt gaatgattta attaaaaagg ctaaaggtgt     10860
     aagtaaacat gtaattgata aatctctaac actgttacaa tatcgggcaa ttgcaacaaa     10920
     tccttcatct tcatcagttt tctgtgttat gaacgttttc aaatcttatt tacataatat     10980
     gtataccgaa ttaaggaata aaatagcact gtctaatttc gatgataaac gatacatttt     11040
     aggtaattca attgatacat tagcctgggg acattacgat attgatagag atcgaaattt     11100
     agattctcta attagagaat tgcaaaaata tgtggaaccc actgattgaa ttttacctta     11160
     ttgtagatat gtaacgatat gtaaccattt atttatacta catatttatt attattatgt     11220
     atttataatt gatgtaatgt gtaaagtatt tttatttgta ttctgtaagt caacaatgaa     11280
     acttgtgcaa caaaaagatt tattaaaaat ttctaatcac gactattcag tttgtgtacc     11340
     ctatcaacac tttcctaaac ataatacttt attcaataat agtgtaaaaa gaggactagt     11400
     ggttggacgt tctggatgtg gaaaaacaaa tgtgatatta agtctcttgc tgcatccaaa     11460
     tagattacgc ttcacagaca tttacttatt ttcaaaaacc ctacaacaac caaaatatca     11520
     atttttaaaa tcggttctgg cacctctcga taaagtcggt tactatgaat atgaagatgg     11580
     tgccgaaatt cctcctccta aagaaatcaa accctattcc ataataatat ttgatgatgt     11640
     agtaacttgt aaccaaaata taatacgtga ttatttttgc tttggtaggc attataatat     11700
     cgattgtata tttattagcc aaacgtattc ttccattcag aaacaattaa ttcgtgataa     11760
     tgctaatttc ataattatct ttcctcagga tgtattaaat ttaaaacata tttttaatga     11820
     tcacgttggt acagatatgt catttgaaac ctttcagaaa atgtgttcac agtgttggca     11880
     aaaaccgtat ggatttgtta ctattgataa ggatgctgaa caagacaatg ggcgttatcg     11940
     taacggtttt gatcagttca ttaaaatata aatgtaaatg tttgtcaaag atttatttat     12000
     tagtcgacga tcgacatgga taaacgttta gctttagagc tggataaggc aagacgacac     12060
     gttaaacaaa aagtacgatc attatcttca cacattgcaa gttcgcaaag acgtttcgca     12120
     acccacattc aacctctaac cgatccaata aaaagtttaa tttctgaaat taaacatgaa     12180
     cgcgaagttg tcccaaaaca ggaaaaaata tcaattcatc atgaggtcaa gcaaccggag     12240
     gcgaagcgac tttttgagtc aacgactaca agccgtagta ctacatcgct cgatccacga     12300
     ttcagtttaa tgcgacaaca tgcggctgct agcacaccca gagaggaggg agaatcactc     12360
     aggaacgtga ccattggaaa gttgcaagaa acattaataa atttgtcaaa aaccgatgca     12420
     tttcgccatt ttcttaaaca atggaccggt ttacctcgac agtacattga agatatgatt     12480
     attgacacag aaaacaaatt tgatcatcaa tatggtgtga gacatggaac cgaggcaaat     12540
     aaatttttta ttggcaattc tgaaattgat ttcaaagacg atcatgtaat cgttcaaaat     12600
     gtagcttatc ctgatacacc tggattgtat gaattatgaa tgcagacaga aaaaactata     12660
     aaccaaatgc acaaattctg gggaatgtag ggaacaaata taaaacaatt attcgacatt     12720
     tctcgagaca gccactaccg tttcaggaac accgtgcatc tcagtcgccg ccattttaca     12780
     gtgatactga agaaagcctt gatgccgatc aaggtcaatc gactcctgtc cagcaacgaa     12840
     gccgcagtag tagtctttca attctcgtac caccagcacg taaacagtat ccgcgacttc     12900
     gcaacatacc tgcaatacaa cgattgcagg ctcaaggtca tgaacaatca actccgacaa     12960
     gtagtatcca accaatatca aaaagagtta agggtggtgg tattcttcgc acattggctt     13020
     taacagataa aaatttagaa tttgttccct acaaaaatcc caacacactc gtaaatagac     13080
     tacgtctttt attatcatcg acagtagctg gtaataataa tcatatgaat gaaatcaatc     13140
     gcatcataac agaattgcgt gaatcgaaaa taattcgtta ataatttaga gacgacttgt     13200
     atatattgca aacacattat attttatagt tagtatttct acatacttta ttcattcaat     13260
     agacaagaat atgacattag ataaatttgg tgaacacatt agtgaacaca gaattcggac     13320
     aactttacaa cgtgtcaaat ctttctcata taccacaatc tcactctttg ggacactgga     13380
     tccagctaaa aaactttttg tattatttaa tattggtacg aattatattt tcccattaaa     13440
     agaagcaacg attacgtctg taaatggtag tccatcgagc gggtggattg cattaattaa     13500
     ttcgaaacaa actacgaatt taattggtca aattttacgt gaaggtgaca aactatcatt     13560
     taaatatgga cccaaaacat cagaagctaa accgatatat atatagaaat agttttaaaa     13620
     gtaccaatcc accatgaagc gtagtgattt aaatattaag cgtcaagttg ttaatgaact     13680
     acatgcaccg gcgagagtga actttaaaag acgacgtgtg atagtgaaag gtttaaatga     13740
     tttattgcaa ctcgatctgg ttgaaatgat accatattca cgcgtcaata aaggctttaa     13800
     gtatatctta atggttatca atgttttttc taaatttgta tgggctgttc cattaaagaa     13860
     taagtcggct ttaagtgttg taaatgcaat gagtgaaatt ttaaaaactc gacgtaacgt     13920
     tcctaaaaac attcaaacag atctgggaaa ggagttttac aataaacatt ttcaacaatt     13980
     aatgaataaa tacaaaatta atcactacag ttcttattcg aatttaaaaa gtagtgtcgt     14040
     cgagcgcgtg aatcgaacaa tcaagggaat gatgtataaa gaattttcgg tgcaaggtca     14100
     ctacaactgg ataaacattt tacctgacat aataaaaaaa tacaataata ccagacatag     14160
     gactactggt ttaaaaccga tttcaataaa taagaaaaac gaacgcaaag ttttggatca     14220
     agtttatagt catcttaaaa caatggacat ttataaaccc aaatttaaag ttggtgattt     14280
     tgttcgaatt agtaaacatc gacatctttt taagaaaggg tacaccccaa attggagtaa     14340
     tgaagtattt acagtttcga agattcaaaa tactaatcct agaacttatt tgctacaaga     14400
     tgtttctgga gaaacaatac gaggaggttt ctacactgaa gaattacaaa aagttaaata     14460
     tccgaatgta tatctcgttg agaaagtttt acgaaagaaa ggtaaccgtt tattcgtcaa     14520
     gtggagtgga atagataaaa ctcataactc ttggattaat tcatcggata ttacatagat     14580
     aattattatt attattataa attgtttttt ttttaataaa ataaactaaa aggaatcaat     14640
     taaaacactt tatttcatca atattatagg tagtacatta aatatcctta aatctattat     14700
     aaatcctcca tattattcta ccacttattt aattataaac taattaaatc aagacgcctc     14760
     ttgaaacctt tagtttacct cgcctttggc gcgcgcccga cactgatcaa ggttaacaag     14820
     tctgcatcac attacctatg cataagaaga cgcacataaa taatacatga atacaaatac     14880
     tataaaaaat aaaactacaa caatgctatt tttagtaact aatttgaatt tttgaattgt     14940
     agttttgtct gtggaaagca atttcacata tccacatttt ggagaatgtt ttttatgctc     15000
     cataaacgca tcatcacttt tttcccatcg tgaaattatt actccacaaa caaaacactg     15060
     ggtacaatca gatatttgaa tataaaacaa tcccgctttt gctaaactcc atggagatgg     15120
     gtatgaatgt acccagttct tatatgataa cagtctttta tcaaaacact cgtataaact     15180
     tttttcatat tgtccatcgt ctagacacat gattttttat ttattcattt attttaagaa     15240
     actatcacta gcacaaaacg cacactactt cacacacata agtctttttc cgataatttc     15300
     atcctactct tcggcaccct cgttaactgt aaatgaaata tacatttctt taatttcttt     15360
     tcatcctcca ttttacatta tgttcactca cctaatattt catcatcaac acgttgaaac     15420
     tcaaaacaat gtgcagatgt cgggtttcta gcatcttctt ttcccaaata tattaaatat     15480
     agtggacgtg gatctcgtaa taactcatca attttctcct cagtcaaata atcacttatt     15540
     cttctcggca gaaacactgc ataattgtcc aactcaacaa gcactgaatt tccgaacaga     15600
     gactttgtgc gtctaatatt atgtatgcgg aatcttgtgt tcaactctag ctcaccagct     15660
     tttaaaatgg gcttctgtcc gcatcgagcg attcgattca atacatccat gacccagcag     15720
     cgaatactct tagacattaa cacagatata tgcacttttt tatattctta tttctcggag     15780
     gattaaatca gtactgactg ctatcaaact tgtactaaat tctatatatt aactataccc     15840
     ccacttttta accttgaatg aaaatgcacc aatattgtgg ccttgaaaaa gtgagataat     15900
     gagaaaaagt gagatgaaaa catcaaagat aaagagggaa tgagtggtct tgaaacagtg     15960
     agcgactctc tgcttgcagg tcacacttac ttgtatcagt aggttgaaat aggtgtacat     16020
     aaaaacatgt agcttttttt tacaactttt atttttttat acaataatat aatatttaca     16080
     ttttactacg actactacta ctacttagct aaacttattc tacactattt tctacgaaag     16140
     aaccccggcc ctaaaaaaat tcacaataaa ttactgttga aaaagattca ataaaactta     16200
     cttctttaat ttaaggcatt atgattcttt ttagttttta ggaagtcgag gtagctgggc     16260
     tcattgaaat gatcccagtt ctcctcttct tctttcamca tcacttcaca tgaggccctt     16320
     tgttttatga catgtttcct tttactyytc aggaagtcga ggtagctggg ctcattgaaa     16380
     tgatcccagt tctcctcttc ttcttcttgc accatcactt cacttgaggc cctttgtttt     16440
     tctttatcgg cccgatggca cttccaaatg tgcctttcga gccgaaacca aagaagaacg     16500
     tggtttttgt cgtatggaca aattatcaca tcctctgaaa aaaaattatt tccaactaaa     16560
     ctactaaaaa aatattaaac ttaccaggag tattataaat cgaactcttt cttatggctt     16620
     ccatttttca agaatttctt gttatatgca gatatacaca agaactgtgt tacacaacac     16680
     aacacattaa cttttataca gtttggggtg gaaaatgagt aaggacaatt gcgcgattca     16740
     tcttgaatga gtgaggagtt gttggccttg caaaagtggg gagtagcatg aatgaccttg     16800
     accttgaaaa catcaaggtc caataatgcc ttggccttga agtggtgggg gaagtgggag     16860
     gggttggcct tgaaaaagta agagagagaa cgagtggcct tgaaagaaag agagggaaaa     16920
     tgggcggggt caaactcaag gtcaaggttg tgttgtgttg tccccccatt cgttatctac     16980
     t                                                                     16981
//
ID   Polinton-3_CoFl repbase;    DNA;    INV; 17482 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 24.11, Created)
DT   25-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-17482
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2108-2108 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 350/347-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1900..959
FT                 /product="Polinton-3_CoFl_1p"
FT                 /translation="MDSRQVSFTPTERLEMEVCKQLFESSPITNSQDAGQV
FT                 VADHLLLLQPHNSQDAGPLIADRLFPSLPVEEELGELVEYLQSDDRNDDDL
FT                 FWQRLAAHPISPLLFDGPFPPITPISPTPSFTKEFDEQHEIARRQTSPPPP
FT                 ELPPIIDLTWSPVKKSAVSKATLSNVDPIPPVILNTLLPLISPSSPTPSFT
FT                 EEFEKKHTSHRATSPSPPPASPPIIDLTWSPVKQLVMSEAASPIVGPNSDV
FT                 LQPLDLSTKNLSQQDNMPPPPPHHHQLNLKTRQPSTKKGRGRVPSMEGRRK
FT                 KKYVEVLYKKRMSKYYIQIKFY"
FT   CDS           13877..14563
FT                 /product="Polinton-3_CoFl_8p"
FT                 /translation="MEETLTLSLSGTSSTLEAQYFPPIELSPKHKYVLGLV
FT                 ELLTFNSIPNIDVNNNKFYVGDQVVVIPTGSYEIEDIQSFLVNVLQPKDIS
FT                 ISIKPNNNTLRSVVRCSHTIDFRPKDSIGRLLGFTERLLQDNLTHDSDLPV
FT                 SILKINALRVECSITSGAYINGKKVHTIHEFFPAVPPGYKIIEVPSQIIYL
FT                 PVIGRVIDHLQLRVVDQDGNLINFRGEVITIRLHIKPSS"
FT   CDS           12457..11756
FT                 /product="Polinton-3_CoFl_7p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MKFKEQSVTLQVPNFDAIVKQEKRVNRHGELLPDSIR
FT                 AVFCGPSNCGKTNSLLALIVHPNGLKFENIYVYSKSLNQPKYKFLKELLEP
FT                 IDGVKYLPFSEREAVVSPDDALPNSIMIFDDIACEKQDNVKAFFCMGRHKN
FT                 VDCFYLCQSYAQVPKHLVRDNVNFLALFRQDEVNLRHVYNDHVNSDMPYTK
FT                 FKELCSSCWNDDRYGFVVINKDVQIKNGRYRKGFDNFALNIRDT"
FT   CDS           14771..16018
FT                 /product="Polinton-3_CoFl_9p"
FT                 /translation="MDDILSIQSPVAFDESIAHYEIHAHQPYASSTYNNSD
FT                 EIRISIQHQDLCLLPSRSSLHIHGRVVKADGTTTAANTKLVNNAILHLFEE
FT                 IRYEINAIEIDKCKNVGSTTLIKNWLTLNPDQDVLTENAGWLGTSNELNLT
FT                 NNNGYFDLLIPLSMIFGFAEDYRKIVVNVKHELILTRSRNDLNAVLQSEIP
FT                 AAEPNGVATWEDFKILILKLEWLMPYVVMSDAHKIRLLNYLQKDKFVSMSY
FT                 RTWELYEYPLLPTTSKHIWTVKTSNQLEKPRYVILAFQTNRKNQRGINASQ
FT                 FDHCNIRNVKLYLNSQYYPYGDLNINITNNHFALLYDMYANFQNSYYGKDR
FT                 APLLSKYQFQHAVPLIVLDCSKQNESLKNAPVDVRLEFESHDNFPNNTSAY
FT                 CLILHDRIVQYSPMSGDVKKLM"
FT   CDS           11712..10768
FT                 /product="Polinton-3_CoFl_6p"
FT                 /translation="MYEGEKDVLNQLVKAREAVKKKYRQLKFGKDEVEKVL
FT                 SETFKPITDPLQEIVTTTKKNERNSSVIYNYLNNDKNKDVTKAKTKEPPND
FT                 DNSTVFESAASESDDNMNEDTDEMNKTIQYMSNNVEINENLSRNSYLQMLD
FT                 NDQKKLLDLMYGVRKENRTYKLGNLPIYFDNNKITMDKLEFPMTDGLMELL
FT                 IKKHPNTNLTTEEDMQKYYMLLKISSVHRRGFDKNEPIRQHNSHKFNKIIA
FT                 PMFDGVPSKTGGSLLPQYKIARKTQHVDYVHWDNPNELVDRLRLLTAERSA
FT                 GNPSHDNEIISIIEELREAGYIY"
FT   CDS           6430..6894
FT                 /product="Polinton-3_CoFl_3p"
FT                 /note="DNA polymerase B (N-terminal half), maybe
FT                 frameshifted."
FT                 /translation="MKRTIFFYFRYRGPAHNKCNLNYQDSRMIPVIFHNLS
FT                 GYDSHLFVKELATCFSGRIQLLPQTKEKYISFTKYVEGTDVSLRFIDSFKF
FT                 MTSSLDKLSSYLKELKILETVFSNDDHYTTDQINLFKKKVCTLTIIHLLLK
FT                 NLRNVGFHQKKVSTAA"
FT   CDS           10437..9856
FT                 /product="Polinton-3_CoFl_5p"
FT                 /note="integrase."
FT                 /translation="MERVVEELHKAARRNYPRRKFDVRGLDETWQADLVEM
FT                 QPYASKNKGYRYILTVIDVFSKYAWAVPIKKKTGEIVSTAMQSILKDGRVP
FT                 VNLQTDHGKEFYNFKFQNLMQKYKINLYSTYSNLKASICERFNRTLKDLMW
FT                 KQFSLQGNYKWFHVLQTLIELYNNRKHQTIGMKPKDVTTENEIQVLTKFKK
FT                 KMQT"
FT   CDS           7196..8923
FT                 /product="Polinton-3_CoFl_4p"
FT                 /note="DNA polymerase B (C-terminal half)."
FT                 /translation="LQVKLELLTDIDMVMFIERGIRGGISQCCNRYAKANN
FT                 SYMKEGYEANKSDKYLMYYDVNNLYGWAMTKPLPYGGFKWIQNVSPVGILN
FT                 VADDGEIGYILEVDLEYPKTLHDAHKDLPFCAEHIAPPASKQKKLMTTLYD
FT                 KQRYVIHYRALKQAVSHGLRIKKVHRVLQFNQSPWLKEYIDFNSEKRKNAT
FT                 NDFEKMLYKLFNNAVYGKTMENERKRIDVKLINKWEGRYGAESYIARPNFH
FT                 SCDIFDEQLVAIQLLRTEISIKKPIYVGLSVLDLSKTLVYQFHYDFMKSQM
FT                 ADQCKLLYTDTDSLLYEISNYNIYNVMRENIIEFDTWDYPINNDFNMPRSN
FT                 KKIVGLMKDECNGKVMLEFVGLRSKMYSVRIQDQKPLKKAKGVKSSVVNAM
FT                 IDFDDYIKCLCENTSMTREQKSIRSRHHQLFTEKETKIALSAHDDKRYFQS
FT                 GSTDTLPWGHYSIVERGLVNQGKELEGGKTANLIENEEVGIETANQNKETG
FT                 REKTAHLKPSKIEGEVAVEGQATVEGLAPYKEVSQSAELIILPARGSNRTG
FT                 LKRQQEPLSPSVVVSDNVTPSKKPRLRTG"
FT   CDS           4481..6400
FT                 /product="Polinton-3_CoFl_2p"
FT                 /translation="MATVQHFKDSATCLWQSYQQVVESKVNAAQIQRLLDC
FT                 SLVTLKDADTFSKSCKLTTSEKQKFQAAVALLKTTVQFLYDHLEIVEAERI
FT                 FIDEPQVFVADSEQEVTAAVKAFENEPAIFIPESTQKAGLAISVQGKGVTE
FT                 TGPTTSIQDEGMIEATAAPVLQDDRSVNLNDVNSAFEKRITTALIVNLKHL
FT                 DLKKFLKDAKHQFVKRIHRSLSEYEALKVNTVLAAEYIIVKDNFENVDLKY
FT                 FNTKSQAIFQTTDLNEWFDVNVQQPIEKNMDDFSDKESGWSLLSILNLVVN
FT                 INKLNPMRGSSFIDLPGYIKNKNACVNVVNRDVQCFKWAILSAIHPTKRNP
FT                 NRVSNYVQYENELNFDGIDFPVNPKQIRKFENQNKVSVNLYFFKKRNDVYN
FT                 VFPSHLTINKKEVHVNLLLLESFYVDHEEDDNMNEGNNHLNEEYKYHYVWI
FT                 KNLSRLVCKQLSKHGHAVHICDRCFHYFSSKQKLEKHEVDCKILNKCKIIL
FT                 PNRNQKDDILQFKNFTYKNKVPFVVYADFECLLEPTKSSRAYQSHRAFSIG
FT                 YFVKCSYDDSKSEYKSYRKSDENDDETPAKWFVRSLYLLALKLEELYKNPI
FT                 KMTNLTLEEQFKYNEASLCHICNQPFSLDDIRVRDHCHLTGK"
FT   CDS           16435..16989
FT                 /product="Polinton-3_CoFl_10p"
FT                 /translation="MNDSNNNLRFLCRKKDKMEYIVDMQGFKKPGNDYVLK
FT                 ELAILPLHPNDAEVQMYLFKAPFAWRKLSQKYKDQNSYLKRNYHGLAWNSG
FT                 NIKYTEIGNILRENLKDATKIFVNAELKQKWLERFGFKVTDMTDYPLFELP
FT                 KQVTSCPHHNGAYKTMCALHNVKRMKKFYLYTEWEDESDDNKELYT"
XX
SQ   Sequence 17482 BP; 5876 A; 3001 C; 3089 G; 5516 T; 0 other;
     agtagataga ctaggccgat acgagcacac gccgaatcca gcacacgtcc ccctccctgc        60
     ccacgtgcac gaccgtgcgc ggacagccac gactctgcac gaagcgctag gggttgtgca       120
     cagcttcctt ctctctggtt tgcctgtagg agagcgtgtt gttttgtatg tatatggatg       180
     agagccccaa ccacacgctc atatctgtga ggtatgacaa ataagtgtta cctttccaag       240
     gtaatacgtg tacacatata catgttcatc tacatacata gataaatact tacgtacgat       300
     gcgtgtatgt atatattttt ataaagattt ttaatttaaa atgtataatg ggtaggtaat       360
     agggtaggac tagagttaga gatgtagcac tgtatcttta gatcgagtgg tccttggttt       420
     caatttgact atgtatagat ttttttatgg gtggactgtt tatgcacagc agaaatagaa       480
     tcagcaaaat aacagcagta ggaattatct tgtttgtgta tcgacaggtc cttggttcga       540
     atttgactac cagcctatgt ataatttgtt ttattggtgg actgtttacg cacagcagaa       600
     atataatctg caaatagcag tagcagcagt aaaatcagca gtaggagtta tcttgtatta       660
     ttattacctt tctacgtata actaagagat ccaacgatac acttacctgt agggtacatc       720
     agcagccaga actatctttt atttatgacc gaagtgtctc agccatacgc tctttcgcgt       780
     gcagtacaac caatacttat tactaagaga gggtttatct gaatagatac gaacacgaat       840
     gggacaagga tggaattttt aaattataag gtaataagtt tcgttaaaaa caaattttat       900
     ttaacttttt taccatttat ttttcaagta ataaaaatat ttgttttaca acattttaat       960
     aaaatttaat ttgtatataa tacttcgaca ttcttttttt atataatact tcgacatact      1020
     ttttttttct tcttccctcc attgatggta ctcttcctct tccttttttt gttgacggtt      1080
     gtcgagtttt taagttcaac tggtggtggt ggggtggtgg tggtggcata ttatcctgct      1140
     gactgaggtt tttagttgat aaatccagag gctgcagtac atcactattc gggccaacta      1200
     ttggcgacgc tgcctcggac atcaccaatt gtttgaccgg tgaccatgta agatcaatta      1260
     ttggtggtga tgcaggtggc ggtgacggtg atgttgcccg atgactagta tgcttctttt      1320
     cgaactcctc cgtaaatgaa ggagttgggc ttgatggtga tatcaacggc aaaagtgtat      1380
     ttagtattac tggtggtata gggtcaacat tcgacaacgt tgcctttgat accgctgatt      1440
     tttttaccgg tgaccacgtg aggtcaatta tgggcggcag ttcaggaggt ggcggtgatg      1500
     tctgacgtct agcgatttca tgctgctcat cgaactcctt cgtaaatgaa ggagtaggac      1560
     ttattggtgt tatcggtgga aagggtccat cgaataataa cggtgatatt gggtgagcgg      1620
     ccaatctctg ccaaaacaaa tcatcgtcgt tgcggtcatc actttgcaaa tattcaacta      1680
     attcacccag ctcttcttca actggcagcg atggaaaaag gcgatcagcg atgagcggcc      1740
     ctgcatcctg agagttatgt ggttgcagca gcaatagatg gtcagcgacg acttgtcctg      1800
     catcctgaga gttggtgatt ggtgaagact caaacaactg cttgcagact tccatttcca      1860
     aacgctccgt cggtgtaaaa gatacttggc gagaatccat gtcgatgaat gaatgaattt      1920
     ctgagggact gacacctcgt ttaaataggc agtcgaacag ctacgccgaa aaattgtagt      1980
     attagaaaag gatacaatta tgtctgctac tatctctctt ctttaaatgc aaatagcatt      2040
     atacatatag aaattcgtga gaaggggaaa actgcgtctt gcatctattg gaccatcagt      2100
     gagcagaaat ccataagtaa gggaaaattg tattagaaaa ggatacaatt atgactgtat      2160
     ctatcactct tcttcaaatg taaacagcat tatacatgga aaaattcatg agtaggggaa      2220
     aactgcgttt tgcagccatt ggaccatcat tgtgcgaaaa ttcatgagta ggggaaattg      2280
     cacatccaaa atacaccccc ctcccccacc taatacatac atgtgtatgt acgcaagtta      2340
     gtcatgcact tgattttctt cgagtggcaa aataaatttg cccacttcta caacagcatt      2400
     caaggaagca acaagtctga aagaggaaaa cagcaaacaa ggagctcaat tccagaagga      2460
     aaaggaaaag gaatatcaac ggtagccgaa acagaagcag cagtaaagga agtggtccat      2520
     aaatttgacg cagcaaaagt aagagtgcct cgattttaaa atcataaaat ctttttcttt      2580
     tttcccttac atagttggct aaatctgtat ttctaaagtt gtttctactt tttcccaaac      2640
     tcgcttgact aaaactatct ctctgaaaaa cttttcgtag agaaaatatt tttcataatt      2700
     tttttctgac acattttact ttaaaattaa gctactaaaa aatttttttt tcaaacttaa      2760
     aaaaattttt tctcatagtt tattatatca atctacatac gtttgatacc aactgctttt      2820
     cataaattat tttctacttt ttcttatacg cgctcaacta aaactatatt tctaagaaaa      2880
     aattttccga gtgaaaatat ttttcctgac acattcaccg tttacttatt ttttattctc      2940
     aaagtgaaaa ttacttttcc tttcacataa ttcattacat ctactacata tgttttattc      3000
     acactgcctt taaatttttt ttttattttg caaacttaaa ttatttttgt tcgttttagc      3060
     tcgacacaac ttctatacct acaccagcat taggaagaaa atagctacga cgataagcag      3120
     tagcaagcag tgtgccataa agttacaagg actgaagtat cccacgagac ccatccagca      3180
     gcagcaaagg taagttatct gtattacaat gattgctttt attttctctt tctacgacgt      3240
     attgtgaaag aatgttttca ctttctactg cggtcgtgat cttcctacta taaatttcaa      3300
     ccatttctca gatagaaaaa aagtattttt gtttttcaaa taatacataa tgcagtgttc      3360
     attcacgtat tcctattttt ttttttttta cagagcagat gccagtatta tttgaagatg      3420
     tcttcgacca agtgtgcaaa aatttcatcc cgctaccacc accagtttca ccaattcaat      3480
     cagatggtcc tttatggtgg ctctttgatg aagaggacga cgacagacga aaaaaaaaaa      3540
     agaagtaaag gacgctacca tctcctatac tggtggagga gctgtacaag caaccacgcc      3600
     acctcctcca tcatcaacac caccattacc accgctcaca ctaccatcac catttaaaga      3660
     atcaccgcca ctaccattat caccaacact accaccaaca tcatcgcatc agcagcagca      3720
     gcagcagtca ccattgtcga ttcaaccgct gccagagaat attgaggaat ggacagaaga      3780
     tgataaaaaa gaactggata tgagagtcca aatcttgcta aagcagcagg agttaaaaat      3840
     aagggcaggt gaaatcataa aaatgatgaa ggttcggttg aaaataatcg aaaataatcg      3900
     gaaaaaatta gaagaaaaag agaagcgtca agctgcccag ctgaaaaaaa agcgattgaa      3960
     tcaaaagaaa agaaaagaaa aagagaaaat gaagaaaatg aagaaaaaaa tataaatgta      4020
     aaaaaaaagt tatagttgaa taatgaacat tatatttgta attttgtaag aatataactg      4080
     tattattaaa tgtaataaat attatttaat tttttttaat attaagtctt ttattgtaac      4140
     ataatgttaa acttcttttt agataagaaa aaaaactttt aaaattaaag ttttaccgca      4200
     attattaatt aactttttgt ttgatgttaa tacctttcta ataactataa tattatcata      4260
     cctgtaatac tgacttcttg taaggtattt accaccaccc caagtcatct ctttctctca      4320
     ttcacacaca cgcatacgca catacataca cacatgcttc ccacccctat ttaaatatgc      4380
     tttttgctaa actctgaagg tatttaaagg agtttacgtt gacagagcag ttcattttaa      4440
     cccagtgact cgattactaa gcttcctcct gcaagaagtc atggctactg tacagcattt      4500
     caaggattcg gctacctgcc tgtggcaatc ataccaacaa gttgttgaaa gtaaagtcaa      4560
     cgctgctcaa attcaaagac tgttagattg tagtcttgta acattgaagg atgctgatac      4620
     ttttagtaag agttgcaagt taacaacctc tgaaaaacaa aaatttcagg cagctgtggc      4680
     tttactcaaa actaccgtac aatttcttta tgaccatttg gaaatagtag aggcggagag      4740
     aatatttata gatgaacctc aagtttttgt ggcagacagt gagcaagaag tgacagcagc      4800
     agtcaaggca ttcgaaaatg aacctgcaat ttttatacca gaaagtacgc aaaaagcagg      4860
     ccttgcaata agcgtccaag gtaaaggtgt gacagaaacg ggccctacaa caagcattca      4920
     agatgaaggt atgatagaag cgacagcagc tcccgttctt caggatgata gatcagtaaa      4980
     tttaaatgac gttaatagtg catttgaaaa acgcattacg acagctttga tcgtaaattt      5040
     aaaacaccta gatctgaaaa agtttttaaa agacgctaaa catcagtttg taaaacggat      5100
     ccatcgatct cttagtgaat atgaagcgtt aaaagtaaat acagtgttgg cagctgaata      5160
     tataatagtt aaagataatt ttgaaaatgt agatttaaaa tactttaaca caaaatcaca      5220
     agctatattc cagacaacag acttgaatga gtggtttgat gtgaatgtac aacagccaat      5280
     agaaaaaaat atggatgatt ttagtgacaa agaatcaggc tggtctttgc tctcaatttt      5340
     gaatttagtt gtgaatatta ataaactgaa tcctatgcga ggtagttctt ttatagattt      5400
     gccaggttac ataaaaaaca aaaatgcttg tgtaaatgta gtgaacagag acgttcagtg      5460
     ttttaaatgg gctattctgt cagcaataca tccaacaaaa agaaatccaa atcgggtctc      5520
     gaactatgtt cagtacgaaa acgagttaaa ctttgatgga attgattttc ctgttaaccc      5580
     aaagcaaatt agaaaattcg aaaaccaaaa caaagtatcg gtgaatttat atttttttaa      5640
     aaagaggaat gatgtataca atgtttttcc cagtcactta acaataaata aaaaagaagt      5700
     ccatgtgaat cttttacttc ttgaaagctt ctatgtagat catgaagaag atgataatat      5760
     gaatgaaggt aataatcatt taaacgaaga atacaaatat cattacgttt ggataaaaaa      5820
     tttatcccgc ttggtatgta aacaattatc taaacatgga catgcagtac atatatgtga      5880
     tcgttgcttt cactattttt cgtcaaaaca aaagttagaa aagcatgaag tcgattgcaa      5940
     aattctaaat aagtgcaaaa ttatactgcc caatagaaat cagaaagatg atatactaca      6000
     attcaaaaat tttacgtata aaaacaaagt acctttcgtt gtatatgcag actttgagtg      6060
     tttgctagaa cctacgaaga gcagtcgtgc ttatcaaagt catagagcat tcagtattgg      6120
     ttattttgtt aagtgctctt acgacgatag caaatcagaa tataagagtt atagaaaaag      6180
     tgacgaaaac gatgatgaaa cacctgctaa gtggtttgtt cgttctctgt atcttcttgc      6240
     tctaaaacta gaagaattat acaaaaaccc tataaaaatg acaaatttga cacttgaaga      6300
     acagtttaaa tataatgaag cttctttgtg tcacatatgc aaccaaccat tcagcttgga      6360
     tgatataaga gttagagatc actgtcatct cactggaaag taagtgtact ttttttaaca      6420
     tattatatca tgaagcgtac aatatttttt tattttagat accgtggtcc cgctcataac      6480
     aaatgcaatc ttaattatca agactcgaga atgatacccg taatttttca caacttgagc      6540
     ggatatgatt cgcatttgtt tgtaaaagaa cttgctacat gcttctcggg aagaatccag      6600
     cttctaccac aaacaaaaga aaaatacatc tcatttacaa aatatgtgga agggactgat      6660
     gtcagtcttc gatttattga ttccttcaag tttatgactt catctcttga taaattgtca      6720
     tcttatttaa aggaattaaa aatattggaa acagtatttt caaatgatga tcattacact      6780
     acagatcaaa taaatttatt taaaaaaaag gtgtgtaccc ttacgattat acatcttctt      6840
     ttgaaaaact taaggaacgt aggcttccat caaaagaaag tttctacagc agcttagtcg      6900
     aagcccatat cagtgatgaa gaatatgaac atgctataaa tatttggaat actttcaaca      6960
     tacaaacact tgggcagtat tccgacttat atttaaagac agatgtattg ttactagttg      7020
     aaatatttga aaactttaga aataattgtc ttgaggcata tcatttagat ccagctcatt      7080
     attacacaac gcctggccta acatgggacg cgatgttgaa atttacgaat gtgagtaata      7140
     tgtgcaaagt attaagatcg ttacacatat ataatttata taaataaaat tataattaca      7200
     ggtaaaattg gaactgttga ctgacataga tatggttatg ttcatcgagc gtggaattcg      7260
     tggtggtata agccaatgtt gcaatcggta tgccaaggcc aataattcgt acatgaaaga      7320
     aggctatgaa gctaataaaa gtgataaata tttgatgtat tatgatgtta ataatttgta      7380
     tggatgggct atgaccaaac cattgcctta tggaggcttt aaatggattc aaaatgttag      7440
     tccagttggt attttgaacg tggcagatga tggagaaata ggttacatac ttgaagtgga      7500
     ccttgaatat cctaagactc ttcacgatgc ccataaggat ctacctttct gtgctgagca      7560
     catcgcacct ccagcgtcca agcaaaaaaa attgatgact acactatacg ataaacaacg      7620
     atatgtgatc cactatcgcg cgctcaaaca agccgttagc catggtcttc gcataaaaaa      7680
     agttcataga gttttacagt tcaatcaaag tccgtggtta aaggaatata tagactttaa      7740
     cagtgaaaag cgtaagaatg caacaaatga ctttgagaaa atgttatata aattatttaa      7800
     taatgctgtg tatggaaaaa cgatggagaa tgagcgcaaa cgtattgatg tcaagcttat      7860
     taataaatgg gaagggcgtt acggtgctga gagttatatc gctcgaccaa atttccacag      7920
     ctgtgacata tttgatgagc agttagtggc tatacaatta ttacgcaccg aaatcagcat      7980
     caagaagcca atatatgttg gattgagtgt cttggaccta tctaagacac ttgtatatca      8040
     atttcattat gactttatga aaagtcaaat ggcagatcaa tgcaaacttt tatacacaga      8100
     caccgacagt cttctgtatg aaatatcaaa ttacaatatc tacaatgtga tgcgtgaaaa      8160
     tatcatagaa ttcgacacat gggactatcc tatcaataat gattttaaca tgcctcgtag      8220
     taataaaaaa attgttggcc ttatgaagga tgagtgcaat ggaaaagtca tgttggaatt      8280
     cgtaggattg aggagcaaaa tgtatagtgt aaggattcaa gaccaaaagc cattgaagaa      8340
     agccaagggt gtcaagagct cagtagtaaa tgctatgata gactttgatg attacatcaa      8400
     gtgcttatgc gaaaatacta gtatgactcg agagcaaaaa agtatcaggt cacgacatca      8460
     tcagctcttt actgaaaaag aaacaaaaat tgcgctcagt gcgcatgatg acaaacgcta      8520
     ttttcaatct ggttctacag acaccctacc atggggtcat tacagcatag tggagagggg      8580
     attagtaaac caaggtaaag agctagaagg gggaaagaca gctaatctga tcgaaaatga      8640
     agaagtaggg atcgaaacag caaatcagaa taaagaaaca ggaagagaga agactgctca      8700
     tctaaagcca tccaaaatag agggggaagt tgcagtggag gggcaagcca cagtggaggg      8760
     gctagctcca tataaggaag tgtcacagtc agcagagctc attatactac cagccagagg      8820
     ttcaaatagg actggactga aaagacaaca agagccccta tcgccatcag tagtcgtttc      8880
     tgacaacgtt acaccaagta aaaagcctag acttcgcaca ggttagcatg attttttttc      8940
     aatttttttc tttaaaaaaa aaaaaaaaaa aaaaaaaaaa tgttacagat ggatcttgca      9000
     caactcaata acatcgctaa caaaggtttt ctgccgaaga aaaaaatttc cgacatgatt      9060
     ccacacaaga aatatatggt gaccaaactg aggaaggtca acactagatt tgggccaaca      9120
     gtagtagctg agttggctga cgattttcaa atctttttac cgtttaaaat atgcatagct      9180
     ctgtatgata atgatgactt ttataacgaa ctgctggatg ctgttaataa gtttagatta      9240
     tttttaatgt acaatggaaa acatattgta ttttcttatg attaagaata agtaaataaa      9300
     atgacaattt ctttcaaatt tgaagtattt atttctcgaa tacacttcct gttacagtta      9360
     gaacgatttt tttcttaata taatattcaa tttaatacat catattgaac aaaatttcct      9420
     taacacattt ttttttaaaa ttgaaaaagt tttattttaa taatttattt gatcaattat      9480
     ataaaaaata tttttttact tattatggaa aaaagatttt ttcataattt acgcttatca      9540
     atccaactat tgtaagtgtt gttgaaaccc aaccacttta caaaaacttg ctgtccacgt      9600
     cttcgaagaa ctttttccac caggtaaata tcaggatttt ttgttttttg cagttcctgc      9660
     tcataaaaac ctccggagat aggttgatct cgataatctt tgagacgata cgtagttgga      9720
     tttgttcctg ctacatgagt gattgtaaat aattctgttg accaattagg agtatagcct      9780
     ttttcaaata cttgttttat tttgctcacg cgtactttat caccaacttt gaattttggt      9840
     tttggtttgc tgctacgttt gcatcttttt tttaaatttt gtcaggactt gaatttcgtt      9900
     ttcagtagta acatcttttg gtttcatacc aattgtttga tgttttctat tattatataa      9960
     ttcgatcaac gtttgtaaaa catgaaacca tttgtaattg ccttgtaagc taaattgttt     10020
     ccacataagg tcttttaaag tacgattgaa tcgttcgcat atagatgctt tgaggttgct     10080
     gtaggttgag tataagttta ttttgtattt ttgcattaga ttttgaaact taaaattgta     10140
     gaattccttg ccgtggtcag tttgcaagtt tactggcacc cttccgtcct ttaatataga     10200
     ctgcatcgct gttgacacta tttcacctgt ttttttcttt atcggtacag cccatgcata     10260
     ctttgaaaaa acatctatta cagtaagtat atacctataa cctttgtttt tactagcgta     10320
     aggctgcatc tcgacaaggt ccgcttgcca agtctcatct aagccacgca cgtcaaattt     10380
     tcgacgagga taattacgtc ttgctgcctt gtgaagttcc tcgacaactc gttccatgtg     10440
     ttaaatgtct aaatttattt ttgttgaatc agcttgaata aatgggaatt ttttttgtaa     10500
     attgtatatg aaaattcgaa tgctatctat ttctttttca atacttataa ttttttcagt     10560
     taagtaagca cgatttacag catctcgagg ttgtttcggt gctgcaacat tgcacaatct     10620
     tttattatct aagtcatact gtccatctgc agtaagtttg tatccgaccc caggaggacc     10680
     ttgggtaccg cctttactcc tacctagttt acgaccaaat acatcaacac tcattgtgat     10740
     actgaaacaa aatgactgct caccttaata tatataccct gcctcacgta gctcttcaat     10800
     aattgatatt atttcattgt catgacttgg atttcctgcc gatctttcag ctgtgagtaa     10860
     tcgtaaacga tccacaagtt cgttgggatt gtcccagtgc acgtaatcta catgctgcgt     10920
     ttttcgggcg attttgtatt gtggtaataa tgatcctccg gttttacttg gaacgccatc     10980
     gaacatagga gcaataattt tattaaattt atgactgtta tgttgcctaa taggttcatt     11040
     tttatcaaat cctcttctat gaacactcga aatttttaaa agcatataat atttttgcat     11100
     atcctcttcc gttgtaagat ttgtattcgg gtgttttttt atgagtagct ccattaatcc     11160
     gtcagtcatt ggaaattcga gtttgtccat tgtaatttta ttattatcaa aatatattgg     11220
     taaattccca agtttatatg ttctattttc ttttcgtacc ccatacatca aatccaataa     11280
     ctttttttga tcattatcaa gcatttgcaa atatgagttc ctcgataagt tttcattgat     11340
     ttcaacatta ttagacatat attgaatagt tttattcatt tcatcagtat cttcattcat     11400
     attatcatca ctttcactgg cagcagactc gaacaccgtg ctattatcat cgttgggtgg     11460
     ttctttagtt tttgctttcg taacatcttt atttttatcg ttatttaagt agttatagat     11520
     tacagatgaa tttctttcat ttttcttggt tgtagtaaca atttcctgta aaggatctgt     11580
     tattggttta aaagtttcgc ttaggacttt ttcaacttca tcttttccaa actttaactg     11640
     tctgtacttt tttttcacgg cctctcttgc ctttactaat tgattaagta cgtctttttc     11700
     tccttcatac atgttgatgc tttaatggct ttcgttggac tacaaatttt tgctatgtat     11760
     ctcttatatt taaagcaaaa ttgtcaaaac cttttctata tcgaccattt tttatctgta     11820
     catccttgtt tataacaaca aatccatacc gatcatcatt ccaacagcta gagcataact     11880
     ctttaaattt agtatatggc atatctgaat ttacatgatc attatacaca tgtctcaaat     11940
     taacttcatc ctgacgaaat aaagctaaaa aatttacgtt gtctctcaca agatgttttg     12000
     gtacttgagc atatgactga caaagataga aacagtctac atttttatgt cttcccatgc     12060
     agaaaaaggc tttcacatta tcttgttttt cacaagctat atcatcgaaa atcataatag     12120
     aatttggtaa ggcatcatct ggtgagacta ctgcttcgcg ttcactgaaa ggtaagtact     12180
     tcacaccatc tataggttct aatagctctt ttaaaaattt gtatttgggt tgattcaatg     12240
     actttgaata tacgtatata ttttcgaatt tcagtccgtt aggatgtact attaatgcta     12300
     ataagctatt ggttttacca cagttagatg gaccacaaaa tacagcacga atactatctg     12360
     gaaggagctc accatgtcga tttacacgct tttcttgttt tacaatagca tcaaaatttg     12420
     gaacttgcaa tgttacagac tgttctttaa atttcatgtc tgtgctgtat aacgtaatag     12480
     ttacaactga actgtgagat aaaatgatac tgccctttat actcttgcat ttttatgtta     12540
     tactatggct acattgcaac tgatctgatg agtataagta tacatatttt tttcgcaata     12600
     ctcagtcaca acccaacctt caaagtgaaa tgatcataca ttgtaagcga ggatatggtc     12660
     ttgtaaataa aatcataaat tctttacctg tagaaattca tttaccaggt tatcagtact     12720
     gtggtccagg tactaaactt acggaacgcc tcgctagagg tgatcttgga gtaaatcctc     12780
     tggatacggc gtgcaaagag catgatatag cttattcgaa aaatcgatac gatcttgaga     12840
     ctagaaacaa agcagataaa attttagctg agcgagcttg gcaaagagtt aaggcttcag     12900
     attcgagtat tggtgaaaaa acagctgctg ttctggtaac aggtgcaatg aagcttaaga     12960
     gtaaattagg tatgggtttg gaacagaaaa agaaaaagaa aagaggttca aaaaagaaat     13020
     gcgtataaaa aagaaactaa aaactactat gaacacagtt attaaggctg cctcgcatca     13080
     aatgaatact aagagcaaaa atgctcgtaa agtaatcagt agtgctttaa aaggtgctcg     13140
     caatgcagtt aaaatgtgtg gtggtaaaaa aagtattaaa attcctcgta ttttacgcgt     13200
     tcctgctcga attggtggag ctttacctct gattccttta tttgctggct tgagtgcaac     13260
     tggcgctttg gcaaatggta ttgcaggaat tatgaagagc gttaacgcgg ctaagtctgc     13320
     aaaaaaaaac tagaagaaaa tcaaagacat aataaaacta tggaagctat tgcgttagga     13380
     aaaggtctct atcttaagcc tcataaaact ggattgggag tatatttaaa accatttggt     13440
     aaaggtctga aaaaaaaaat tctaaaaaag taaaattacc tttaagagct ttaacaaatg     13500
     tagatttaat aaaattctct aagagtttaa aaatttcttt ttttcgtgga gtatttatgc     13560
     gaaatgactt acccagtgat gggccatggt atcgtgaaac tgctatagta aatcttgacg     13620
     acaagaatgg acctggaact cactgggtgg cgtatcgaaa atatggccag aatgttgttt     13680
     attatgacag ttttggagat ttgcagccac ctattgattt aatgttgtat tggggtgttg     13740
     atacagttca gtataatcac aaacgatatc aaaaatttaa ctcttacaac tgcggtcatt     13800
     tgtgcttaaa gtttttgtca aaacatatat aagcacttaa aatagtaaaa aaaatctcag     13860
     ttttacattg acggtcatgg aagaaacatt aacacttagt ttgtctggta cttcttctac     13920
     cctagaggcg caatattttc cacctattga attatcacca aaacacaaat atgttcttgg     13980
     tttagtagaa ctcctaacgt tcaattcaat tcctaatatt gacgtaaata acaataaatt     14040
     ttacgtgggt gatcaagtgg tagttattcc aactggcagt tatgaaattg aagatattca     14100
     gtcattttta gtcaatgtgt tacaaccgaa agatataagt atcagtatca agccaaataa     14160
     taatacgctt cgtagtgttg ttaggtgtag tcatactatt gatttcagac caaaagattc     14220
     tatagggcga ctactaggtt ttactgaacg attactacaa gataacttaa ctcatgactc     14280
     tgacttacct gtatccattc tcaagattaa cgcattacga gttgagtgca gcatcactag     14340
     tggagcttat ataaacggaa aaaaagttca tacaattcat gaattttttc ctgcggtacc     14400
     accaggatat aaaattattg aagttccatc acaaataatc tacttacctg tcattggacg     14460
     agtcatagat cacttacaac tacgcgtagt tgatcaagat ggtaatttaa tcaattttcg     14520
     tggagaagtc atcacgataa gattacacat taaaccttca tcgtaatggg tatcatttat     14580
     aatcacaaaa agtatataaa cagcttgaca tgtacttctg cgctcagtca acggcaagct     14640
     tttaaatcgt cgagacgtca gaaaggacaa cggaagcatc aaaaattgac caatcaaaac     14700
     atacagtttc ttaaaagtct tggcttaaaa ataaaaggtg tgaactaacg ttcaaatttt     14760
     taccttaaag atggatgaca ttttaagcat tcagtccccc gttgcgtttg atgagtctat     14820
     cgcacactat gaaattcatg ctcatcaacc atatgcatca tcaacatata ataatagtga     14880
     tgaaattcgt atatcaattc aacatcaaga cctatgcctg ctaccatccc gcagttcttt     14940
     acatattcat ggaagggtag tcaaagcaga tggtactacg acggctgcaa atactaaatt     15000
     agtaaacaat gctatccttc atctatttga agaaataaga tatgagatta acgctataga     15060
     gatagataag tgtaaaaatg taggttcgac aactctcatt aaaaactggc taacgctcaa     15120
     tcctgatcaa gacgtattaa ctgaaaatgc tggttggctt ggtacttcaa atgaacttaa     15180
     tctaacaaat aataatggct actttgatct tttgattcct ctcagtatga tttttggttt     15240
     tgctgaagac tatcgtaaaa tagttgttaa tgtaaagcat gaacttatac tcacaagatc     15300
     tagaaatgat ttgaatgcag ttttacaaag tgaaattcct gctgcagaac ctaatggagt     15360
     ggcaacttgg gaagacttca agatattaat attaaaacta gaatggctca tgccttacgt     15420
     tgtaatgtca gatgcacata aaattcgtct acttaattat ttgcaaaaag ataaatttgt     15480
     atctatgagc tatcgaactt gggaacttta tgaatatcca cttttaccta ctacatcgaa     15540
     acatatatgg acggtcaaga cgtccaatca gttggaaaag ccgcgctatg ttatactagc     15600
     ctttcagaca aatcgtaaaa atcagagagg tattaatgct agccagtttg atcattgtaa     15660
     tataagaaat gtaaaactgt atttaaattc acaatattat ccttatgggg atctcaatat     15720
     caatataaca aacaatcatt ttgcattgtt atatgacatg tatgcaaact ttcagaattc     15780
     atattatggt aaagatcgtg cacctttgtt aagcaaatat caatttcaac atgctgtacc     15840
     tttgattgtc cttgactgtt ctaaacaaaa tgagtcgtta aagaatgctc ccgtagatgt     15900
     gcgattagaa ttcgaatctc acgacaattt tcctaataat acatcagctt actgcttaat     15960
     tttacatgat cgtatcgttc agtacagtcc catgagtggg gatgtcaaaa aacttatgtg     16020
     aggctataaa acccgatgca tgacactaca aacttcatta atctgttaac cgccatggaa     16080
     aaaggtcaga gcagttggac tagagaaaaa gaagagaata ggcgaaggca agaagagtgg     16140
     aaaaaatttg agaagagaca cgctgaggaa tggaaagaaa aagaagctag gcaaaaatca     16200
     aaagatctta aatgttgtaa aatcctttaa aaataaaaaa atcaacttgc taaaaaagat     16260
     atttattgat caacatgtct cataagccaa ccattagcaa attcactact gatgttaaat     16320
     atcaaaaact ttcaaccaag gatgatgatg atgacagaaa taaaaaatct tggctgaaaa     16380
     atttaacaga aaagttctca actaataaat catcatttcc taaacgtgaa aattatgaac     16440
     gattcaaaca ataatttaag gtttttatgt agaaaaaagg ataaaatgga atacatcgta     16500
     gacatgcaag gctttaaaaa gcctggcaat gattacgtgc ttaaagaatt agctattcta     16560
     ccgctccatc cgaacgatgc tgaagtacaa atgtatcttt tcaaagcacc ctttgcttgg     16620
     cgtaaattat cacagaaata taaagatcaa aattcatatc ttaaacgtaa ctatcatgga     16680
     ctagcctgga attcaggcaa tataaagtac actgagattg ggaatattct acgagagaat     16740
     cttaaagatg ccaccaaaat ttttgtgaat gcagaactaa aacaaaagtg gcttgaaaga     16800
     tttggattta aagtcactga tatgacagat tatcctttgt ttgagctccc aaaacaggtt     16860
     accagttgcc ctcatcataa tggagcttac aaaaccatgt gtgctcttca caatgtcaaa     16920
     cgcatgaaaa agttctactt atatacagaa tgggaagatg aaagtgatga taataaagag     16980
     ctgtacacat aaatatttaa gaacaatgta attcgtactt tgtaaattgt aattcaaaat     17040
     aaattttcta aaaaataaga ataaatgttt taagatttac tattattttc ctaaaaaata     17100
     aaaatccact ccttgtccta cccactctca tcatacatta tacattttaa attaaaaatc     17160
     tttataaaaa tatatacata cacgcatcgt acgtaagtat ttatctatgt atgtagataa     17220
     acatgtaatg tgtacacgta ttaccttgga aaggtaacac ttatttgtca tacctcacag     17280
     atatgagcgt gtggttgggg ctctcatcca tacatacaaa acaacacgct ctcctacagg     17340
     caaaccagag agaaggaagc tgtgcacaac ccctagcgct tcgtgcagag tcgtggctgt     17400
     ccgcgcacgg tcgtgcacgt gggcagggag ggggacgtgt gctggattcg gcgtgtgctc     17460
     gtatcggcct agtctatcta ct                                              17482
//
ID   Polinton-3_DSuz repbase;    DNA;    INV; 19569 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-19569
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 107-107 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 6-bp TSDs.
XX
SQ   Sequence 19569 BP; 6348 A; 3136 C; 3060 G; 6946 T; 79 other;
     agtaggtagt taatacggga gctggctcac taggtaataa atcatgtcaa aaaaggaggt        60
     gggggtgacc ctaattagtc acgcatggtt gcacactgac cctaattagt cacgcatggt       120
     tgcacacagg tgttctaatg acctacttag cataattaat tcaaaaaggg gggtgttgct       180
     gaccctagtt agatgagcat ggttgcacac aggtcactta atgaggttag aaagtggtgt       240
     gtaggagtgt gagagagtgg tgttttgata tgtcttgttt tgtcttgtct ttttctcaag       300
     ctaaaggtgc gtgtgtgata ggggtgtttt gtcatgcgtg gaattttgtg gagtgcaatg       360
     gttgcacaca ggtcactatg ttgcttctaa cttgtgttag aacgcgttat gcgtgggcgt       420
     tttgttgagt caattagggt tgtaggtgac acctggcttg cgtgtgtgat aggggtgttt       480
     tgtcatgcgt gggattttgt ggagtgcaat ggttgcacac agatcactat gttgcttcta       540
     acttgggtta gaaggcgtta tgcgtgggcg ttttgttgag tcaattaggg ttgtaggtga       600
     cacctggcta cggtcttgtg gtcaaaaggt gttggtttga gggatattag accgcatact       660
     tttgtggtgt gaaacaagcg tgagttcggt aacctccccc tctttagcga gcattagatg       720
     ggaaagtgag cgtgggagtg taacaaaaac gttgttttgt tatgcgtggg cgttttgttg       780
     attcaattag ggttgtaggt gacacctgtt agtgtaacct gcctacggtc ttgtggtcaa       840
     aatggtgact gtggtggtgg tggttcctaa cagaacaaaa ccaaatgaga tcgtttgttt       900
     agtcaaatac gtttttcttt aatcatattt gaaaattttt tctcatgcgc ttacatgaga       960
     gagaaaacgg ttaccttcta agttttcaaa aaatgtatgt gttaaggaga aatgtggaaa      1020
     gtagttcagt tttagaaaac tattcgtttt acaaggggtg ttttgtcatg cgtatgaatt      1080
     tgtaaaacta tatttaggcg gaggaggagg aggaagggaa gttgtttttc tatgcgtggg      1140
     cgttttgttg attcaattag ggttgtaggt gacacctgtt agtgtaacct ggctacggtc      1200
     ttgtggtcaa aaggtgttgg tttgagggat attagaccgc atacttttgt ggtgtgaaac      1260
     aagcgtgagt tcggtaacct ctcccctctt tagcgagcat tagatgggaa agtgagcgta      1320
     ggagtgtaag agggatggtg gtggtggcgg tgcttgtggt ggtggttcct aacagaatat      1380
     acacatttat acacaaaaac aaatgagatc gtttgtttag tcaaatacgt ttttmtttmw      1440
     wcatattcgt ctwaaattwk ttcwcattgm gtcttwtaga wagakgaaac kgtwwccttc      1500
     catcagtttt caaaaggcgt mttcktcaag gagaaatstg gaaagcwktt cagcatkcak      1560
     amamctgcww gwgtcgggtc saaccatcta saatcgtcgt gtgaaccctc cggtaatkca      1620
     magctagakk awagktgtgt cwmcwtackt tsmatccgaa ttmgatttgk gskggmttmt      1680
     acawmttkat aaaaatgtat gaaatgmttt accaaktkcg wagcaawgtt scktgaactg      1740
     tgawctaccc aswtccgtgc tscsttaaga actcwtcaat tattgakgaa atcatwwwwt      1800
     mcttcammgt aawagtctga awgtwtawct taaastgaag tttggtasag gtaactcgtw      1860
     gtacwatact tccaaaaaaa aaaggaaaaa ataaaaacaa aaaaaatgaa taagtattgt      1920
     ggaaagtgca acattaccct atcgggtaac atttcgtggg ctcatcatct gcgaacggag      1980
     caacacaaga agaatgttgt tgaaccagtg gattcaagga taaaaaaaat cagttctgga      2040
     tttcaaggaa ggattgttca ctacttatat gaaaacacca acaatgatgt aatttatcca      2100
     acacaattta tggagcaagc aggagaagct tttctacctc acttgtatcc attgttggaa      2160
     agttatgcat cggtgaaaat aaattttgaa ctttttggag agtacggact tttgaaggaa      2220
     gaaaaggaat gtattgaaat aaagtcattt caaagtaaga tgacaataat tagtgcctat      2280
     tcgaacattg aaaatgaata taaggagcac atggaaaaaa ttttggcgag gatggaagaa      2340
     ttccaagaaa gggatagtgg atggactttg cttcatctca ctcgattgga gatgaatatt      2400
     aatcaatatt cacccttaag aggatcatct tatataaaac taccctcttg tttagaagga      2460
     aaaaagcaat tataaatgta aaaaacacag atgatgaata ttgttttaaa tggagcttaa      2520
     tcgcagcatt aagtaaacta aataagaatg cgaacagatg cacaagctat aaagtgaata      2580
     taaatgatga agtaattcaa gtcaatggga tcacactaaa tttcactgga ttgcaatttc      2640
     cactaaagcc tgcggatata tcgaaattta tggaaataaa taaggacata aatattacac      2700
     tttttggatt cgacgatgga gttatattcg ggcccatatt ttactctcct gaagtgagga      2760
     gaaatcatat aaatatgttg atactggagg aaggatgtaa agcacactat acttggataa      2820
     aaaatctctc aaagtaagtt gttttatcat tttatcatta ttatatcttt tacctgtttt      2880
     tgtttttaaa tttcataata tttatttgct ttcatactta aaaaaaaaat tttttttttc      2940
     ttgtgtttat ctttttttag tttggtttcc tctcaagttt cgagagacaa atcaaaaaaa      3000
     tggttctgtc aaatttgctt aaattactca ttgagtgaag atgctgccaa ccggcattca      3060
     gaagtctgtg ggaaaaaagt ctcgcgttta cccaacatga aggatgccac tttacggtat      3120
     acaaatgttc aaaaggaagt gatggtccca ttcacagttt acgctgactt tgaatccatc      3180
     cttcaaccaa ttaataaaaa cgaaacatta aatttaaata ttataaatat acatagacct      3240
     gtttcatatg catactatat aaagtgtgca catgataaca gtttagataa gtttgtctta      3300
     gaaactgtat ttaactcggg aatgaatttc ctgttatcac taatagaaaa tttaagtttt      3360
     atatatgaaa actatatttc aaaatctgtt tctttaataa tgtcagatgt tgaagaagat      3420
     gatttccaaa aatctaataa ttgtcatata tgcaacactc ctcttttatt agacagagtt      3480
     agggatcact gtcacttcac aggaaaattt aggggggcag cacataatga gtgtaattta      3540
     aaatacacag ttccaaaatt tattcctgtt ttcttccaca atttcaccag gtatgattgc      3600
     catctattta ttaaagattt ggcagtcata cctggtgaaa taaaggtaat tccattaaat      3660
     aaggaacaat atatatcaat ttcaaaaatt ataactttaa gtaatggtga taactttgaa      3720
     atccgttttc tagactcgtt tcgatttatg ccttctgctt tagatacatt agcttcaaat      3780
     ctagatagtg aacaaatgtg tataacaaga tcatttttcc ctaatgaaaa tcatttcaac      3840
     ttaatgcgac gaaagggtgt atttccatat gaatatttag attcagttga gaaattaaaa      3900
     gaaagtaaat tacctcctag agaagctttc tatagttcct taaccgaaaa tgaatgttca      3960
     gttgaaaatt atactcacgc acaaaaggta tggaatgagt tttcttgtaa taatcttaaa      4020
     gattatttag aattatattt aaaaacagat gttttattaa tgtctgatgt ctttgaaaac      4080
     tttcgaagac tttgtagtaa aatttattca cttgatccag cacatttttt cactacacca      4140
     ggattatcat gggaagctat gttaaaatgt actaaaattg aattagattt attaactgat      4200
     atagatcagt ataaatttat tcaaagtggt attcgtggtg gcttagttca atgtacatgt      4260
     agatatgcta aagcaaataa taaatatgtt gagaattttg atagtactca aaaatcatca      4320
     tatttgattt atttggatgc aaataattta tatggttggg ctatgtcaca atctttacca      4380
     tatggaggtt ttgaatggat ttcaaggggg gaacttgata gtattaacat tgctgagatt      4440
     gcagatgata gtgaatatgg atacattttt gaggtagatt taaaatatcc tttaaaattg      4500
     cacgataaac ataatgacct tccattttgt tgtaataatc agttaccaac aaagtcagac      4560
     aaaataaaaa aattaattgc tgatttaagg gataaagaaa aatatataat tcattataaa      4620
     aatcttcaac agtgtataga aaatggatta attctaacaa aaattcatag aggtcttcgc      4680
     ttctttcaga aaccttggct aaaaacatat attgatttga atacattcca tagaactaat      4740
     gcaaaaaata catttgaaaa agattttttt aaacttttaa ataatgctgt ctacggtaaa      4800
     acgatggaaa atgtagataa gcgcgttaat attaaattaa ttactgaatg ggaaagtgct      4860
     tcaccatccg attcttctgg tccaaaaagg cattgcggta gatctcttat ttcaaagtca      4920
     aacttccata gtgtcaaaca gttttcagaa aacttctttg cctttcaaat gaaaagatta      4980
     aatgtgttgt acaacaaacc tttatattta ggttttgctg tattagattt atcgaaatgg      5040
     aaaatgtatg attttcatta taattatatc aaacctaaat acaatgaaaa tgttcaatta      5100
     aattatatgg atacagattc ttttatatat accattaaca ctgaagattt ttataaagat      5160
     attcgaatga tgttgagatg aagtttgata catcagatta ttctgatgaa ttacttaatc      5220
     tctataattt tcctaaagct aataaaaaaa ggttgggttt ttttaaagat gaactcaatg      5280
     gaagacctat gactgaattt gttggtttga gatcaaaaat gtatgccttt aaaacatcta      5340
     atagtaatga cagctctgaa aaaacagtga aaaaatcaaa gggtgttaaa agaagtgcaa      5400
     tagatcaatt aacttttaat agttttaaaa aatgtttgtt ttcggaagag gaagtggtag      5460
     gctctatgtc aatgattaga tctaaaaatc atcttttatc aacaattaaa tgtaaaaaag      5520
     tagttctcag tcataaagac acaaaggttc ttatacaaga caataaaatt aatacactac      5580
     aatatggcca ttataaaata gatgaaaaaa gattagaaaa taaacttaat gaaatggatt      5640
     caaatattta tgtttatgaa caaagaataa aagaaataga gaattgttct aatagaaata      5700
     attatcaaga gaatgaaata gaaaaattta agaaaaatat atatgaatgt gaatttgaaa      5760
     tgttttatac agaactagaa ttaaatttat tagattgtaa aaaaaatgaa taaatgtact      5820
     ctataattgt aaataagaca gaacaaacaa cgctttttta tttaaagggt aaaatgtaag      5880
     gtaatgtata aactaaatat tacaattcac aatattatta ttattattat tataaaattt      5940
     ttatttaaca gaacaaacat cgcttttact tacagggtaa tgttaaaatt tatgagaatt      6000
     aacagaacat gaaaatttga atttaacaga agaattacaa tattttcttt gaattacatt      6060
     caatttgttt actttcttct atatttagtg gtatagtttg tttatagtta tctataccac      6120
     cctgtaatct atatacttta ttgtcatcat tacttaaagg aattgattta atgtatttat      6180
     cattatcttc atctaaatta aacggtatag tttgaacata gttatctata ccaccctcaa      6240
     caagaatagt ttcatcctca ctagatgatc ttggaataca tggttccgga ttttcatcat      6300
     cataaaggat tgtatcatgg tcatcatcat catcatcatc atcatcgtca tcaccataca      6360
     aattatgaga aaatttacca tcctcttttt tattaatgtt ttggagatct gaaaatataa      6420
     atattttact atatatatat atacaaatat tattttatat gtatttaacc aacctttttg      6480
     agctccatcc gaaatattat tttcaacttt tttatttatg ttttggagtt ctgaaaatat      6540
     atatatatat atatattagt atataaaatt atatatatat atatatatat attaaactca      6600
     ccttttttta atttactcga attattattt tcatcttcta tttttatatt ctgtaaaaat      6660
     aaacatattt ccctactaaa tcagattatg ttataatatc actattagtt attttgaaat      6720
     cgttaatatc gttaattgat attttatctg tactaatctg actttctttt ttatttaaat      6780
     attcaagcat catttgagct gctaaatttc tctttcttaa atatatccca ttaattcttt      6840
     ctgcttcctc tatttcaatt tcttggattt gtggaccatc actaagataa cctgtttctt      6900
     cttcttctat ctcttctctt ttactctctt gtttggagag aagatcagca tcctttgata      6960
     ttttttcata gacaatcctg tcttttcgtc tctctgcatt aattactgtt tgggataaaa      7020
     cttctgcaaa ttcaaaacaa tttattctta aagttgctaa gggggtatta gtattgcgtt      7080
     tagatttttg atggcgttgg cgattagata aatattttaa attcatacgc ttagatttac      7140
     ttagacttcg tctagaatgt gttcttctat atatattatt gtaatgacat ttaactccta      7200
     ctgtagcagt tttgtattgg atggtaaaga atctgtttag accccttctt cccaaatcca      7260
     tatgccctcc tattctcctt tcattttcaa ctaatttttg cttaaaattc tcaattatag      7320
     ctctctttgt gaattcgatt tgagagttgt gtatgttttc agtgcttttt aatttatgag      7380
     tagtgttcct ttttattgga acccgactta cactttcaaa ttctgtatca ctatcactga      7440
     tccccaacac taattcttgt gacgtattac taaatgttgg tgctcgactt acgttttcaa      7500
     attctctctc actatcaatt atacccatat caattttttc tgatttttct tctcctatgt      7560
     tcttattttc tatgtgatca acactttcat tttcgctatt aaaatcaaaa agattggttg      7620
     gggttgtagt tgttgatgta gctgtttttg ttgtatcttc ttccagaagt tcttttttta      7680
     atgtagttgc tgctgttgta gttgttgttt cttccttctc ctcctcctcc agaattcccc      7740
     ttctcattgt aggtgtagtt gcacttgttg tagttgaggt agatgtagtt gtagtagatg      7800
     ttgatgtaga tatttcttct tcaactgtac ttgcacttgt acttgttgtt aagtcttttt      7860
     cattaatgct accattaata gcattaaata ttttagtatc gagttcactt tttaagtttg      7920
     gtatctcctt ttcatcactt gtcttgttta tgagatccat aaaaatatga ctgtcctcta      7980
     ggatctcaaa ttttaagtca attttaatga ttttttttag ttttggaaca ttgataaata      8040
     acccaatcga attattggaa gtcgatgggt tttcaattaa agtcatttca ttggggagtg      8100
     gtaccatttt caccatcgga ttaaagaggg aaagtatcac aaaaaatatt ataaaaaccg      8160
     tcattttaat tttgattttg tttttttttg acaatcgaac aaacgaacta tcgaatgaat      8220
     aagcaaacga tccgaaattg agttgcgtga acgaatagat ggaaactgaa cactttttga      8280
     aattcttctg cctttatacc ctccagattt gtatatataa atatgtaacg ttctgtttaa      8340
     attcttatct gtacatgctt ttcttcacac tttataaata ggaattgcgt gattgtgaag      8400
     aaacataatt tatttcacgc attgacgtca atgtctacat ttttattgtt gtttatagaa      8460
     tttcgttttt atgaatccaa ctatcttctg attttgaaag gcctacccaa cgcacaagca      8520
     cataatcaag ttccacccaa aattcttatc tgtatatact cttttagtct agccaacgca      8580
     caagctcata atcaagttcc gttccgttta taaataggaa ttgcgtgctt gtgaagagga      8640
     aacataattt attttcacgc attgacgtca atgcctacat tttaattgtt ctatgcttcc      8700
     acttgttgtt tatagaattt cgtttttatg aatccaacta tcttctgatt ttgaaaagcc      8760
     tagccaacgc acaagcacat aatcaccttt ttgtttcaca atcttttcaa caagataagt      8820
     attagggaat tttgtttttt taatttcttg tttatagaaa ccgccttgta ctggatcacc      8880
     cttcaagtcc tcaagtaaat atgtggtggg ggatgtattt tgtactttcc gaattcgaaa      8940
     aatttccgtt gtccagtttg gggtatagcc tttttcaaag acatgtttat atttacttat      9000
     tcgtacatga tccccctctt taaagtcccc atttgtaaat atttttagat gattgtatga      9060
     tctcatcaaa atctgttttt catttttagc attgacgtca ataggcttca ttttaatcgt      9120
     tctatgcttc ctgttattat aattattaat caactctttg tatatttgaa gccaagtata      9180
     ttttccatta aaactaaact cacgccacat aagttctttt attgttctat taaaacgttc      9240
     cacaatagat gctttaagag tactaaatgt tgagtaatga ttaatttcat atcttttcat      9300
     caattctcta aattgtttat tatagaattc atttccatta tctgtttgta aattctttgg      9360
     tactccacga ccagatttca ttattttttc cattgctttt gtaacttcat ctgcattttt      9420
     tgattttatt gcttcacccc atccatattt agaaaatgta tctattactg ttaacaaata      9480
     cctatacccc ttatttgatg atgcatatgc ccccatttca accaaatcag cctgccataa      9540
     atcattaata ccctttacta taactctacg tcttgggaaa ttcttgaatg atgggcgatg      9600
     taactcattt acaatatctc gtttactcat agctttattt tatctggtat aaatggtttc      9660
     ttctctaaag attcagtttc accttttaaa actgaggttg gtgcaattat ataattgaaa      9720
     atgttacttt ctatttcatt tatatcctcc actaccttat taaaagtttt catgagaaat      9780
     tccaattttt tagaaatttc actcactttt ccctcaatat tattgattcg aggtcttaat      9840
     ctaaagattt gttgtttctg cggttgctta gaaatttcat tagatgtatt ctgtactact      9900
     ttacttattt catcatcaat ataaatcttt gttgcaatat cattttcatg aatggggggt      9960
     agggaatttt taaatcgttt cctctgaaca tttaaatgtc catcataatc attaagtata     10020
     ctttgaaatt tttctagacc ttttgttata tctcttgagt actctttctc atttaaaaaa     10080
     caaccaaact tatcaactga cattttaatt ataaaataaa taatgaaaga gtggtatatt     10140
     tatgtatgat ccacattaat tgttaaaact tcttcttcgt ttacacgatg tgcaaatgga     10200
     cttttccgaa gtattattcc atctatttgt gtctgatcag aacgaatgat tggtggaggt     10260
     ttttttaaat gttggtttat gaatttgtta aaattttcca atttatcaac aaactctttt     10320
     attgaattat gtatatactc catttgagtt atcattttta ttactttact ttccagctct     10380
     gatactcttt tatttcgtag ttgaaatgat ttagttatag tttccatttg atgtgatttc     10440
     gcttcattaa ttttatcatc aacatacaat ttaatagcca aatcatttcc gtttattggt     10500
     tttgaagagt ttttaattct ttttttctga acatttatgt gaccatcagt gtctatatat     10560
     atacctgtaa gactctcaac ttcccttttg aaaagcaagg aaaaatctct atcatttgaa     10620
     aagtgaccaa acttgtcaat agacatttta ctattaaaca aaatgagaaa atgttttcta     10680
     ttttattaat atattatttt tgcttcccgc aattcttcta ttattgaaag aatttcatta     10740
     gtatggttat tattaccagc cgctctcgat gccattaaga gttgcaatct ttcaacaagt     10800
     tcattaacat tatcccaata tacatagttt ggtggtattt tttgtagtct catataccca     10860
     gaaccagtat gttcttcatt tactgaagat gatattaatg gtttaataat tgaagaatat     10920
     tttttagaac gattcccctt tacttgacca tctggttgat agtttctttt gtgagcactt     10980
     gtttcaatta aaatgttttt atatgattct aaatcgttct tagtataatc cttaggacta     11040
     ttatgaaaaa ttaaagagta tagacctggt gatagagtcc ataaatttcc acttcctaat     11100
     tccatcaaat tttttttaat tttaagtgtt gtattaccca acattaaaat attattttct     11160
     tctcttggtc cataactatt gtctaaaatc ttttcttgct ttaactgatt aatgttgaga     11220
     ttgtacttca ccccggtttc ttcatataca ctttcattta aatcatctgt gtgaggttgt     11280
     tgtgaaacat cggattcatc tataagagac tgttgtgaaa catcagattc atctataaga     11340
     gactgtcgtg aaaaagcatc aacataagca tcactctcac tatcactttc gattactctc     11400
     tcgtgttccc ttttttcttt tttactttta ggtactctta tattctcttt cttgaactta     11460
     gtcttaatat catgtgtatc attaatatat tcctttttat tcaatttttt attttcagtg     11520
     agtaattcat gtaaaggttc tgtaataggt ttaaaagttt cctccaaatt tgatacgttc     11580
     tcatttttta tttgtttcaa ttcatcaaat tttcttttta atgaatttct acttttcgtc     11640
     aactgttcta aaagtttacg cttcattgtt gtcgttttct ctgatactca tgtgctactg     11700
     ggaaaaatgt actataattt aaatatttat aacaaagggt ttgagtttga gttttataaa     11760
     actttatttt tatttttatt tttattttta tttatcaaaa tagatacatt aataatatta     11820
     aaaatgaaaa cattttaagc tttatttaat tctaaataga gattgttatc attcctttta     11880
     ataatacaaa aaagattatc ttttatataa tcaattgttg aatcctctaa agttgagtat     11940
     cgttccggca agtacagcat atactcttca agttcaagag tgagggtcat cccaaagctg     12000
     gttttcttac gttgagcacg tcgaataggg tagcacacct ccgattccat cttcgccttt     12060
     gttaagagag gttttggtgc gttaccatta aactccttga gtactttcat cattcccgga     12120
     ttgaccattt gtagttgttt cttcttgtag ttgttttcgt tgtttttgtt gcttttacct     12180
     gtttttgttg ttgattttag ttgttatttt agcagttgta gctgtttttt gttgtttaat     12240
     ttacctgttt ttagcagttg tagctgtttt tgttgttaat tttagttgtt tttagcagtt     12300
     gtagctgttt ttgttgttaa ttttagttgt tttttagcgg atgtagctgt tttgttgttg     12360
     ttttcagctg tttttagcag ttgtatctgt tttaattgtt gttgttgtct tactgtttta     12420
     actgtttttt atgttgttct tattgttgtt gattttgatg attgcaagat tttttaggtt     12480
     gaaactttag gctgagaacg ttttagcttg aaacttttag gttgagactg tttgcaggtg     12540
     gtttttaaat gtgtgttaga ataacttttg atcgagtttt tataccttga ggtaaactaa     12600
     ccctccctgt tctctctcat tcttgattta gcatcgacca atcatagcag tgaatagcat     12660
     gtaaataggg tgggtttcaa gaatcataga gaaattactt gatcatagtg taaaagttag     12720
     ggtgggatag agagagtaag aattggaggg acaggtgtcc acagttggta ctattaaagt     12780
     cttgttttct ctcatagtta tagttaatgt tattccccaa gtatttcaca atttcttttg     12840
     ggggttgtaa atttccaaaa ctatcaaagt aatgtatact ttttttattt ttgttataag     12900
     ctacccaatg tgtaccattt gatgaactat catctaggtt tataattcct gactcttctc     12960
     tccaaggaga tttggggagt gagtctctca taaacacacc tcggaaatgt ggaatgtact     13020
     tttgagcaaa attcaaaatt tcgaaatttg aaagaggttt tttaggtagc ttagtaatta     13080
     gttttttgga tttcctctaa atggattaag atataatcca taaccttttc tataaggttt     13140
     aagaaacata ccttcaccca ccttaatact ttccattttc ttattatgtt gcttactctc     13200
     ttctaattgt tttttcccca tatttgcatt attaatagtt ttagcaatag ctgcactacc     13260
     agaggcgaga ctacctaatg cacttagtgc agtcaaaatg ggtacaatag gtaaaaaacc     13320
     accaattttc ggtacattaa taatacgagg aatcttaatt ttttttttat ttctgccaat     13380
     tgatttattg actgctttac gtgcaacctt aatcgcactc attagatcta gtggcttctg     13440
     agttttcaat gcccgcattc ctgtttggat aacatttgaa aaactcttta cctttgattt     13500
     ccttttctta cactttctct ttgttccctt tttcacaccc attccgaatt tcttttttgt     13560
     tttcataata tttgtaatca agtatgctgc tgttttctct gcaatactac tatcttttga     13620
     accaacacgt tcccacgctt tatttattag tactgcgtca gccctatgtc gatcagctag     13680
     atccttatat tgtgaatatg caatatcatg tactctacaa gcttcatcca attgatttat     13740
     cccacgatca ccgcgctcca acctttgttt tagctttgtt ccaggtccac aaaaattata     13800
     accaggaata tgtacttcaa atggaagtgt gttaattatt ttgttgataa taccactacc     13860
     tcgtttcaag tttgaactct gactgcaaca attataaaaa cttttaccca ttttatataa     13920
     tgtttaatca aggagcattt ctcatcgaat gaagtacatt acacacgtga atatgcgttt     13980
     aatacgtcaa aaacaagaaa tctgtgttag aaatatcgag ggtggtgatc attcattaac     14040
     aaattcagtt ccacgacata gttctttatt acccaataca ataagagcat tggttgtcgg     14100
     tccctcaaac tgtggaaaaa caaatgttat gctcagcctt attgaaagtc caaacgggct     14160
     aaaatttgag aatatatatg tattctcaaa gagtttatat caaccaaagt atgagtattt     14220
     agagaaacta attaaaccga taaagggaat gggatattat acgttctcac aaaatgatga     14280
     agttttacca cccgctaagg ctaaagaaaa ctctattatg atttttgatg atgttgcttg     14340
     tgaaaaacaa aacaacattc gttcatattt ctgtatgggg cgtcataaaa atatagattc     14400
     tttttaccta tgccaaacat atactcatat tccaaaacat ctaatacgtg ataacgcgaa     14460
     tatgattata atgtttaaac aagatgattt aaatatgcgt catatatatc gtgatcatgt     14520
     aaatactgat atgtcctatg attcatttat gaaaatttgt caaaagtgtt ggagtgataa     14580
     atacggattc ctcataataa gtaaagataa cgatatggaa aagggaagat acaggaaggg     14640
     ttttaatgaa tttataatta tttgagaata taagtttcat tctgtaagct atattttcac     14700
     agtacattat tagaccccaa aatgagtaga tcattcactc ttacattaaa tggtaatgaa     14760
     cccattacaa acatttctta tttcccaccc attgaactga caaatggtga atatgagtgt     14820
     gcactcattg actttcatat gtacaactct atacccaatg ttgatataaa taataatcta     14880
     tttcatattg gtgataaagt aattcaactt ccaatcgggt catatgaact caatgatatt     14940
     tatgattttc taaaaaataa actaaaagat tatgatcttg agaaaacatt tcaaatggag     15000
     agtaataata acacacttca agttcatatt acaactacca aggaacctat ttattttaat     15060
     agaaacaact ccattggaca attgcttggt ttcaataaaa aaataattta tcccgacttg     15120
     aaaaaaacat atatatctga tcaacctgtc aacattttaa aaataaacac aatacgctta     15180
     gtatgtaata ttataagcgg gtcatatatt gatagtagac aagatcattc attatacgaa     15240
     tttggaatta atgttccacc aggctataaa atgaatatca caccacacaa tcttatttac     15300
     ttaccagtca acactagaga aataagtaca ctctctattc acataactga tcagaacggt     15360
     gaattaataa atttacgcgg tgaaaactat acaattcgtt tacacttaag attaatacaa     15420
     tgattatata caataaaaga ggtgatacct accatcatca gcacacttta aaacataaag     15480
     ttataggaag aggatcgaaa ccaaaaagac acacacttac attaaaaaat aagttaattc     15540
     ttaaatcatt gggcttcaaa gtgcgagttt aactaaagtc atggggttga atgaaatatt     15600
     ggcagtacgg gaaaaacctt tctctgatga aagtatatca aagaaggaat atcacagcta     15660
     tcaaccctat caacaatcat ttaaaccaaa tgatgagata agaattacaa tccaaaatca     15720
     agatttatat gtactccccc atgagagtct tctaaatttt caaggagata ttaccctaat     15780
     taaggaaggg ggagtggtag aaactcaaaa tgttattgcg aaaatgagaa ataattgtat     15840
     ggcatacttt ttagatgaaa tacgctatga aatcaatggt gttgaaatag atagaacaag     15900
     atttagtggt attacttcta caataaaaaa ctttgtttct ttaaatcaat ttgaaagcaa     15960
     gagactttac aattctggat ggagtggagg acccgttttc aatttaagcc cccacttcaa     16020
     cttttcaata ccccttaaaa acctacttgg atttgctgaa gatttcaaaa aagtattatt     16080
     aaattgtaaa catgaactag tactattaat atcaaaaaat tttaatgatg tacttgaaca     16140
     agataaattt gagaatgcac aattagtcgg aaaatatcat ctcaatatga ctaatattac     16200
     atggaaaatt cctcatataa cacccagcga ttcaacgaaa attaaaatgt atgatattat     16260
     aaaaagtgga accaatctac cgattgcatt ccgtagttgg gatacataca ttaatcctaa     16320
     actaagtaat ggaacaaatc atgtttggaa tgttaaatta gctgctaacc gagaacgtcc     16380
     acgatttgct ttaattggat ttaaagataa ccactatctg attacaaaca atttaagaaa     16440
     tctaaaggtc tatttaaact ctgaaactta tccctacgat gacttaaact tggactttga     16500
     taaagatcga tttgctcacc tatatgatat gtactgcaag tttcaatcta gctactataa     16560
     ccgaagtgaa tctcctttac tatcacctac agactttaaa actaaagctc ctattatcgt     16620
     aattgactta tcatatcaaa atgaaatggt taaatcgggg cccattgatg ttaggatttc     16680
     aattgaactt accaagcccg ctatcgaaaa tgttcaagta tattgcgtgc tcatacatga     16740
     tcgtttagtt gaatataacc cgttgaatgg tctagttcag cggattgtct aacaattaat     16800
     caatcaatca tgagtgaaga tattgttgca attgatgttc aaggatttct tgggaacaac     16860
     aataaattta ttctaaagga aattggagtc gtattcaaaa acgagacaat cttgaattct     16920
     aattttatca tacactctcc acatgatttt attgaattga ataagaaatg tagaaaaaca     16980
     gctacttggc taacaaaaaa acatcacaaa atttattgga atgatggagt atactttttc     17040
     aaagaaacac aaatgtatct aagagaaata attagaaaac aggaaataat ttgtaaggga     17100
     tatcaaaaaa ggttattcct acaaaaattt ttaaaaattg ataatgtaat taacattgat     17160
     gaaattggtt gtccctctct aaaaataatg gatggaaagc actttccata ttgttcatta     17220
     catgctcggg atggtgtctg ctctctgaac aatgctcata aaatcttaaa cttttacaca     17280
     aacgaaaact cctaaacacc ttttaaacaa ttcattcaca ttttgagagt cgggaaaata     17340
     agtttacgaa atgactgatt ctaataacaa tcttaatata ccgacttatt catctttaat     17400
     aaataaaatt aattttttta ttaatacatt tggaaatatg atttcaaaag aggacttgaa     17460
     attactactg gagacaagga acatgttcat gggtactgac gtaaaggagt ttataaaaac     17520
     aacatttgga gaacatttaa atttatgtac attttctaat gataatatag aaacttgtgc     17580
     ttgttttcat tttgtaattc aacaatatag agttagaaaa ttaatttcat catatattga     17640
     aatttttaaa taaagagaaa accaaaaaaa aaaaattttc tattgttttg aatttgtttt     17700
     cgagggtggg tctatcatca gctgttgcat tttttaacat ctgttttcta agtataatac     17760
     aacgagttat ctctaccaaa ctttagttta agataaacat tcagactatt acgttgaaag     17820
     aaaaaatgat ttcctcaaaa attgaagagt tcttaaggga gcatggaagt gagatcttca     17880
     aggaacatgc tacgaaattg aaatcatttc atacattttt taaagatgta gaagccaccc     17940
     cactaattca ttcaaagtat ggagaacacc tatcatcctg tgcatgggca tatgatgatt     18000
     gtaaagttgg acctgacact tgcaggtgta tgcatgttga aaagagagaa gaagacgcct     18060
     taaaattgat ggaaagatac attcatttat ttaaaagact caatgtaaac taatttaaga     18120
     cgaatatata gaaataaaaa cgtatttgac taaacaaacg atctcatttg tttttgtgta     18180
     taaatgtgta tattctgtta ggaaccacca ccacaagcac cgccaccacc accatccctc     18240
     ttacactcct acgctcactt tcccatctaa tgctcgctaa agaggggaga ggttaccgaa     18300
     ctcacgcttg tttcacacca caaaagtatg cggtctaata tccctcaaac caacaccttt     18360
     tgaccacaag accgtagcca ggttacacta acaggtgtca cctacaaccc taattgaatc     18420
     aacaaaacgc ccacgcatag aaaaacaact tcccttcctc ctcctcctcc gcctaaatat     18480
     agttttacaa attcatacgc atgacaaaac accccttgta aaacgaatag ttttctaaaa     18540
     ctgaactact ttccacattt ctccttaaca catacatttt ttgaaaactt agaaggtaac     18600
     cgttttctct ctcatgtaag cgcatgagaa aaaattttca aatatgatta aagaaaaacg     18660
     tatttgacta aacaaacgat ctcatttggt tttgttctgt taggaaccac caccaccaca     18720
     gtcaccattt tgaccacaag accgtaggca ggttacacta acaggtgtca cctacaaccc     18780
     taattgaatc aacaaaacgc ccacgcataa caaaacaacg tttttgttac actcccacgc     18840
     tcactttccc atctaatgct cgctaaagag ggggaggtta ccgaactcac gcttgtttca     18900
     caccacaaaa gtatgcggtc taatatccct caaaccaaca ccttttgacc acaagaccgt     18960
     agccaggtgt cacctacaac cctaattgac tcaacaaaac gcccacgcat aacgccttct     19020
     aacccaagtt agaagcaaca tagtgatctg tgtgcaacca ttgcactcca caaaatccca     19080
     cgcatgacaa aacaccccta tcacacacgc aagccaggtg tcacctacaa ccctaattga     19140
     ctcaacaaaa cgcccacgca taacgcgttc taacacaagt tagaagcaac atagtgacct     19200
     gtgtgcaacc attgcactcc acaaaattcc acgcatgaca aaacacccct atcacacacg     19260
     cacctttagc ttgagaaaaa gacaagacaa aacaagacat atcaaaacac cactctctca     19320
     cactcctaca caccactttc taacctcatt aagtgacctg tgtgcaacca tgctcatcta     19380
     actagggtca gcaacacccc cctttttgaa ttaattatgc taagtaggtc attagaacac     19440
     ctgtgtgcaa ccatgcgtga ctaattaggg tcagtgtgca accatgcgtg actaattagg     19500
     gtcaccccca cctccttttt tgacatgatt tattacctag tgagccagct cccgtattaa     19560
     ctacctact                                                             19569
//
ID   Polinton-3_DTa repbase;    DNA;    INV; 3744 BP.
XX
AC   .
XX
DT   01-SEP-2021 (Rel. 26.11, Created)
DT   01-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Polinton transposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3744
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (01-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A TE fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(24..1496,1524..3527)
FT                 /product="Polinton-3_DTa_1p"
FT                 /translation="MELKSPYETCKEYHNPLEAIEINLPSTSKAANHITVE
FT                 KRPKMEAVDEHDAISKFHGSEMYPNFPIKTGNLCSVCGETYVSTRKMQHIL
FT                 TDKHRIAATDQLERNKNVLLISTESIFPVKTYRVDSTKTEFDIMEFYKQCE
FT                 SNIMKVLLYCLTEYKVLIKFNLKLYGLYAKLTEKEEKCEVIQHFEAPFMTT
FT                 FNIESIAELLNKAIEAITFLSREFQDLDPDWTLENLLYFEITVLKCDYRIP
FT                 TSGFVTVPRNVDSRYAVINVINFDVYCFKWCILAYIAYRKMKNSKFKNNFE
FT                 KQTALQNLQFKDHYQVANISRDMIEYEGFSLNFSGIDFPITREGIKLFEAN
FT                 NIEFTINVFDVDDDDTSIVGPTIKSNATRNHCINLLSLHDDKENSIHYAYI
FT                 VSKRKLCFPQAKEYNAFEKKITHDTKESEKEQHTNMRFTSFTKKLSPPIVI
FT                 FARIKTFANSAHTELKACSVAIYIVHQYNPHLNEIWTYEGNHIQYCTFFIL
FT                 GADCIKKFWIKLKAKTISFFFNVWRGSKDQIDDLNICEEDYQMNGRCCACE
FT                 DHIAKEDREKYFNQFTGKYVGPIHKACKLTYVLTDPFFPVIFETLSRSDLY
FT                 LLITELGNDLKPTPSRTDMYTVLTKVIRTNFKLKYELKFMDANKFLNFSLR
FT                 KLSSFMDKAHFKNLHSKFQGDSFEQMLKKCKFPHDYVDSFSKMNETQLPHL
FT                 TKLRILSSQEKFTVEDFNCAQETWNTFKCRSISEFSELYMKSNTLILADVF
FT                 EQFRSFCLKIYKLDPINYDDAASMSWDAMLKLTKVELDLISDPDKNIFFKK
FT                 AIRESLVQFTPRLSIANNKYMENFDPKKRSNFLAHLEAEGLYDWAMCQPLP
FT                 FSKFEFLNSSQIALLDVRNISTNGNLGYMLEVDLKYPAYLQRRHQSLPFCP
FT                 EHKTLEGGKHSKLLADVTDRKNYIIHLKHLQLVLGHGLILTKVHRVLVFNQ
FT                 SCWLKPYIELNLNGRKLAQSEFESHFFKLMNQVVLKKVMTTAENINNVVFV
FT                 THNESRKKSAGFKQRISRDNLHNVKILGEKVAAIESIIEINYGKSMFIGAC
FT                 VSEISKWLMYEHYYNFLLVKCPSIKILYMDTNLFVTSSEYDIYKLIKENPS
FT                 CFDTSNYNSTNLYQILPSNYIQLGILTDKNASRIMTLFVALRERGYSVLVE
FT                 "
XX
SQ   Sequence 3744 BP; 1354 A; 614 C; 623 G; 1153 T; 0 other;
     ataaatgttc ttttgtcaaa aacatggaat taaaaagtcc atatgaaact tgcaaggaat        60
     atcataatcc tttggaagcg atcgaaatca acctgccttc aacttccaag gcagcaaatc       120
     atatcacagt tgaaaaacgc ccaaaaatgg aggcagtcga cgaacacgat gcaatctcca       180
     aattccacgg atctgagatg tatccgaatt ttccaattaa aacagggaat ctgtgctcag       240
     tatgtgggga aacttacgta tccacaagga aaatgcaaca tatacttaca gacaaacaca       300
     gaattgctgc cactgatcaa ttagaacgga acaaaaatgt tcttttaata tcgacagaat       360
     caatttttcc agtaaaaact tatcgtgttg actcaactaa aactgaattc gacataatgg       420
     aattttacaa gcagtgtgaa agtaatatta tgaaagtatt gctttactgt ctgactgagt       480
     acaaagtttt gataaagttt aacctaaaac tttatggatt atatgcaaag ttgacagaaa       540
     aagaagaaaa atgcgaagta attcagcatt ttgaggctcc attcatgaca acatttaata       600
     ttgaatccat cgccgagcta ctaaataaag cgattgaagc tataacattt ttatctagag       660
     agttccaaga tttggacccc gattggacat tagaaaatct tctgtatttt gaaatcacag       720
     tacttaaatg tgattataga atccctacaa gtggatttgt aactgtccct cggaacgtag       780
     actctagata tgcagtgata aacgtaataa acttcgatgt atattgtttt aaatggtgta       840
     tcttagcgta cattgcctac agaaaaatga aaaactcaaa attcaaaaat aactttgaaa       900
     aacaaactgc tttacaaaac ttacagttta aagatcatta tcaagttgcg aacatttctc       960
     gagacatgat tgaatatgaa gggttttcac tcaatttttc gggaatagat tttcccataa      1020
     ccagagaagg aattaagctt ttcgaggcaa acaatattga atttaccata aatgtattcg      1080
     atgtggatga cgatgatacg agtatagtag gaccgactat taaatcgaat gcgacccgga      1140
     accactgtat aaacttattg tcattacacg atgacaaaga aaactcaatc cattacgcgt      1200
     atattgtaag caaaaggaaa ctatgctttc ctcaagccaa ggaatacaac gccttcgaaa      1260
     aaaaaattac tcacgatact aaggaaagtg aaaaagaaca acataccaat atgcgtttta      1320
     cgtcctttac aaaaaaactt tctcccccga tagtaatttt tgcgagaata aagacatttg      1380
     cgaattcagc acatacagaa cttaaagcgt gttctgttgc tatttatatc gttcatcaat      1440
     ataatccaca tcttaacgaa atttggactt atgaaggtaa tcacatacaa tattgctaaa      1500
     caaaaccaga ataataattt taaacatttt ttatcctagg tgcggactgc ataaagaaat      1560
     tttggataaa actcaaagcc aaaacaattt catttttttt taatgtttgg cgaggctcca      1620
     aggaccaaat cgacgaccta aacatttgtg aagaggatta tcaaatgaat ggaaggtgtt      1680
     gtgcttgcga ggatcacatc gccaaagagg accgagaaaa atattttaac caatttactg      1740
     gaaagtatgt tggcccaatt cataaagcct gtaagttaac atacgtgtta actgatccct      1800
     tttttccagt tatatttgaa accctgtcga gatctgattt atatttacta ataacagaat      1860
     tagggaatga tctaaagcca actccttcaa gaacggatat gtatacagta ctcaccaaag      1920
     taataagaac taattttaaa ctaaaatatg aacttaaatt tatggatgca aataagtttt      1980
     taaactttag tttaaggaaa ctttccagct ttatggataa ggcacatttc aaaaatctgc      2040
     attccaaatt tcaaggggac tccttcgaac agatgcttaa gaaatgcaag tttccccatg      2100
     attatgttga tagcttttct aagatgaatg aaactcaatt gcctcaccta actaaattaa      2160
     gaatcttgtc aagtcaagag aaattcactg ttgaagactt taattgtgcc caagaaactt      2220
     ggaacacttt taaatgcagg agtataagcg aattttcgga gctatatatg aagagtaata      2280
     ctctaatttt ggcagatgtt tttgaacaat tcagaagttt ttgcttaaaa atatacaagt      2340
     tagacccaat taattatgat gatgcggctt caatgtcttg ggatgccatg ctgaaactta      2400
     ccaaggttga actagacctc attagtgacc ccgataaaaa catatttttt aaaaaagcta      2460
     tacgtgaaag tttggttcaa ttcacaccaa ggttatcaat tgctaataat aagtatatgg      2520
     aaaattttga tcccaaaaag cgttcaaatt ttttggccca tttggaggct gaaggtttgt      2580
     atgattgggc aatgtgccag cccttgccat tttcaaaatt tgagtttttg aatagtagtc      2640
     aaattgcatt gctcgatgtt cgaaatatat ctacaaatgg taatttgggg tatatgcttg      2700
     aagtagatct taaatatccc gcttatcttc aaagaaggca ccaatccttg ccattctgtc      2760
     cagaacacaa aacacttgag ggcggaaaac attctaaatt attggctgat gtgacagata      2820
     gaaaaaatta tattattcat ttgaaacatc ttcaacttgt tttagggcac ggtctgattt      2880
     taacaaaagt acatcgagtt cttgttttca atcaatcttg ctggttaaag ccttatattg      2940
     agttaaactt aaacggaaga aaactagctc aaagtgagtt tgaaagccat ttcttcaagc      3000
     taatgaatca agttgtcctt aaaaaagtaa tgactactgc agaaaatata aataatgttg      3060
     tctttgtcac tcataatgaa tctagaaaga aatctgctgg atttaagcaa cgcatttcaa      3120
     gggacaattt gcataacgtt aagatccttg gtgaaaaagt agcagctatt gaatcaataa      3180
     tcgaaatcaa ttatggtaaa tcgatgttta ttggtgcgtg tgtttctgaa atctccaaat      3240
     ggttgatgta tgaacactat tataactttc tattagtgaa gtgtccttca ataaaaatat      3300
     tgtatatgga cacaaacttg tttgttacct cttcagaata cgatatctac aaactaatta      3360
     aagaaaaccc tagctgcttc gacacgtcta attacaatag tactaatttg tatcaaatat      3420
     taccatctaa ctacatacaa ctaggtatac taacagataa aaacgccagt agaataatga      3480
     cattatttgt cgcgttgaga gaaaggggat actcagtttt agttgagtga atttaggaga      3540
     aaaacatttc tttagaactt agaaaagaat ccaattatta ttaattggga caaccatggc      3600
     tttgaaatgt tccaatactt tcttattatg ttcttcatac aaatttcaaa agataaactt      3660
     attaaatgaa gtaaagtaat taaatttctt tgttttttta agggaggtgg atgtttttcc      3720
     ttacctatta atataaaatc tcta                                             3744
//
ID   Polinton-3_FoCa repbase;    DNA;    INV; 20918 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-20918
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2495-2495 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 6-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           2212..986
FT                 /product="Polinton-3_FoCa_1p"
FT                 /translation="MNAGILEGADGFSIGRNIRRGLDFHYQRRFPSISLVL
FT                 KETPPRYRTSASWYRNYRDNDGLDLHWVQLDFFAGTRKLPPHFCLFATWGS
FT                 KAVIINDNSRMRVDPSLLIQVRNNDAIRIIVVLIRFREEFLHWHFVQEVDF
FT                 VDSDHDEYALLILNRDNGMGTYHNPLDNNRTASLSFVRHIADAFSACLRQT
FT                 FFIHPAGTLSGHLFPYFESGGNSGRALALWVSAIESCQRLGSDLETALGEF
FT                 MKRKHVAGQLIFDIEENKYLFRDSTLEGVLDFVRSRTRVANNDNIVEIFRP
FT                 RLASRPHPPLVALSPQSPPILPPPLPSPSSPPPTRPLSPQTPPLSPIPPAL
FT                 QPPPPSPSSPPPTRPVSPQSPPLSPILPILPPPPSSPPAPXSRKRKTSTPI
FT                 RRSERAKQQKTCKCC"
FT   CDS           18460..17162
FT                 /product="Polinton-3_FoCa_9p"
FT                 /translation="MAKPKQIVNFIRSETDLFSEPGYDLTLASSHRVDYHP
FT                 ITNISDRSTPLTFIIQGNDSQYIDFSETQLYIRCKIVDSKGADRDAAQTDT
FT                 APVNNFLHSMFSQVAIYFNDTQITSPTSLYPYKAYLETLLSFGKEYTKTQA
FT                 MAALYHKEADPTTGDEGWKTREKLANNSKVFELCGKLKTDIFNQNRFCIPG
FT                 IDIKIVLYRAPDSFCLLSKTSGSAQDAAQLHIMEAKFVVQKHTLLPSITMG
FT                 HLRLMEKGQPACYPMRRGDMKSFSLSAGTLQYTNESLITGLLPDRLVVGIV
FT                 SSKAVHGHYNENPFNFLQADISSITVTVNSEQVTSQTFELDFDNKKSIEAY
FT                 FSVFSGLGLSNLDTGIELTFDIFKTGKTLYVFDLRHQHDGFAIPRHGSVKI
FT                 EIKLRNATTSALTVLCHCDYQSVLYVDKNRHIYFKDYSM"
FT   CDS           15907..16629
FT                 /product="Polinton-3_FoCa_8p"
FT                 /translation="MARKMKVVPESWYKKILALNSQQDVDLDLEEKLKAEK
FT                 TNIFGNSTIPDEVKILLLQNLNRQLIDNKRQDDKKPLLVKNAENETATEQP
FT                 STVISKPTREVSGATLDVLLNNTTGRGRKILEFLQANGVKITADKVIVNDV
FT                 TYTLKKMNALLVGLCHGFSAKSTLKSDPSMLNLLQFIKSKSPPADLFPTTV
FT                 NQFIVKQKGSGLKRKQLKKKKTKKQSAWIQKKVHEHRINKLTRKMQKWNPF
FT                 "
FT   CDS           13653..12100
FT                 /product="Polinton-3_FoCa_6p"
FT                 /translation="MATKQSNISGIVPPPNSPASPNQEEKGNPTFPTSAAT
FT                 PSANPTQSSATRADKRELETSTLATDDKKIKIEDDRIIQVYSNELLEKIQI
FT                 VIERKKKCIYLDLPTCFYVIKRLVGAMHKDPAIRVQLSTLCMQMYQEFPFF
FT                 ASRMLYEEAEEHGFKESKLAYRSENPAIWVSPFNDDYYVFIKQEGVSVNFK
FT                 LDDSWDVIHKIVKTAFPLVVGDEGRYIAFFQCFERFLSEILYACEDLHMAN
FT                 TYERLKGEMMKLGFNEVREGATPKFYVMNNWVSVSIPDFNQAKDEDEEDEE
FT                 RKVLGCEIQTDILLNPWLLNLYEHPLQNYGIISPAEMCAKKRMLREIRKRT
FT                 KPTKPKFDIMMMAEYYETSGWTPVAEDDWADIXEKEGVYVFGIDETGQIWQ
FT                 KFRTEANQDVKIWEGVLEELCKPKDGEEEPNDKTITDGKDAKPCMHPHHQF
FT                 RGNWPAKYFELRKWKRVAKYGDFPPNTNGKRKNAWLVDSEGQTWMKDYVDL
FT                 REVTVPVFFVPEKCNCGQLTKM"
FT   CDS           15511..14570
FT                 /product="Polinton-3_FoCa_7p"
FT                 /note="integrase."
FT                 /translation="MIMGSASAARIKSSYLNVKNPGSLSGLGGFIKSGKRK
FT                 ESRREIENVLKTIPAYTLHRSRRKIFPRRVVYVKHINDQWGMDLMDVSKYS
FT                 KTNYNTHFLLTAIDIFSKRGYIEPLKNKSGLVVMKGIEKIFKRSKGLPLRI
FT                 QVDLGREFYNVHCKEFLEDLGIKLFSVQSELKSCVVERFNRTILEKIHRFM
FT                 TNYETTKFVDRLSDLENNYNSSYHRSIKCAPKEVNKKNEQIVFARLYNKLI
FT                 GATDTRQEKFKVNDVVLISKVKKIFEKGASANFNKEKFIVNEIKTTFPRTY
FT                 ILRDLKGDILEGGFYREEMQKI"
FT   CDS           19794..18970
FT                 /product="Polinton-3_FoCa_10p"
FT                 /translation="MSSFYVHIESNSSFSHFQDNTISSFRNWLCSPIILEP
FT                 NSYEVALVECAYPSTPIRFGKGDELYKVLIKSNDINSPVNENKTIYNNIVS
FT                 LDLFKNNTYSEYKTQDEWITVCNNTNIETFDDLLEAMSTKDFLFKHYNGYT
FT                 LLSTRTVEEDVVYDFQFNTQMANILGFPHQIHCNSSLQADYKFNFKSNNSR
FT                 YYIYCDIVENQHVGDTTAPILRSLVNPYTDIDKIVSKTFNNLQYVSVAKPS
FT                 MDYIHMYIRNEFGEPPPFSFGSFSATLHFRRKRF"
FT   CDS           6456..7154
FT                 /product="Polinton-3_FoCa_3p"
FT                 /translation="MPASIDKLSKSLAHGNNTEHFKTTKKMFSSSNGRTAL
FT                 FRDGNVELLMGKGIYPYTYMQSLENFKEEKLPGIEHFFNDLTEEPCSPKDY
FT                 QNAQKVWDSYKIKNLGEWHDLYCLLDVSILADCLERTRDILWDSYGLDVAH
FT                 YLSLPMVAFDGVCKLGNVELEYLGLDEYQWFETGVRGGVCGAGGMRIAQAN
FT                 NPYMQELHDKNKPTSYISFLDINNLYGKNFLFPPKNYLLLLKM"
FT   CDS           10686..10069
FT                 /product="Polinton-3_FoCa_5p"
FT                 /translation="MESSNDQKVFPVQESFGLLQTFLKHGAYKLHGNSYSP
FT                 LHFLSDRVVLENATGSIEVEIESVLHLALNLVLVARDSPASSRDIAFFSSE
FT                 CQSLLEDMNNKQHKRGTYLTNPELPLQYKPKTYPFRQWTGIAPFDKNKEPT
FT                 LSKMESRIKHRFLTQRFIAQDDVQGYRQHKGCPSGPPPLDVYGIQCGICEH
FT                 SAGDHASWDAPGLTLC"
FT   CDS           4221..6080
FT                 /product="Polinton-3_FoCa_2p"
FT                 /translation="MTMYINKCCPQCSKKFCTNYELDHHMQKEHPYKGIPI
FT                 QVGGGLIKRYLPLTRSLYTGLINVYELDVKNNEFKDAFQFFETIFSELEFI
FT                 LNQELDEKKCLKISSELKCHFYKTSVDPVTMQMIVSDRTNPDPVFRGVTHS
FT                 VYRSDSIRTIVNSLAWKMCNSVAAYINKKSGWILDFVSGFEISVGRFQPIG
FT                 GTGFKTRNNLLKYVSPATVLSIDNTDPMTGRPDQNCFSLSILASKILPSLK
FT                 AQYKEHVNRLQEKRSTYINELNKHGFNWDGLSTPIDMSQFSTFSKNNPDVD
FT                 LHVFVYEEEDAAKQLYSDLLSKPTRTAKDKLQIKKEIRNSIYPLYSSNKIP
FT                 QFRVKERILKHTHADTEVSNLQEIDILLILEETEQGWTGHYALIRNFNALI
FT                 SLTXNKSYCCKNCVNCFTSEDRLNEHRPNCLALGMQQVTMPEDKTYSFNKY
FT                 GRMVKAPFRYLIIFLHSAIFSKYLSSFQRYFGDFESLLRSKNARLPESERQ
FT                 LHLAEHTPSGYAWICLDWNNTIVSYKVHRAKRDDENVVARFFEDIFEDQEI
FT                 RQEEIESIQKEAKYNMKINPQLKKRLTHLIENDPDSLDPCYFCKKKLQVNP
FT                 KDKTVFHHDHFSRQFLGLAHDR"
FT   CDS           7730..8785
FT                 /product="Polinton-3_FoCa_4p"
FT                 /translation="MRPSGRWLHPLKINHTPKKIFLSFGRQLFDFFLKITF
FT                 FFGSYLQCIENKRKRQSMSVISTEAQMKRVLRKPTYQRIIEINKDVQIAVK
FT                 KRMAVYLDKPIAVGVAILDISKTMMYDFHYDYMVPKYGDAAKVLYGDTGAE
FT                 RFPALQTNFKKRFPAVKVLKKRFPVISDSLVYFVETEDIYKDMQANSDMFD
FT                 LSEHGGILEFMKDPTNHKRLKKMKDEFGSAVLWKFAVAKPKMYAAEAITWD
FT                 AEGNMIKKIKIAAKGCKSSAIAHQISYDLIDDIINRCHQEQISFRSIVSSK
FT                 HTINTIFCKKNALNGFDTKRFIVNPMLTYAHGHVDAPKYIAEQALLNSQGF
FT                 CNHNILCRG"
XX
SQ   Sequence 20918 BP; 6372 A; 4037 C; 4212 G; 6293 T; 4 other;
     agtagtagaa gtgkctaggt tttttcgcca aagatttctc gcccgcttta tttcttatgg        60
     ggaaatcctt ggctaggttt tctcgccaag gatttctcgc ccgctttatt tcttatgggg       120
     aaatccttgg ctagggcttc tcgccaagga tttctcaccc actttatttc ttatgggaga       180
     agccacggat ttctcgccca ctctatttct tatgggagaa gccacggatt tctcgcccac       240
     tctatttctt atgggaaaaa aagacgggtc ctcatcacac acacttctta tgaggaaaaa       300
     gagggctcct cgccacatac ttttccttac gggaaaaaat acgggtcctc gccgccatac       360
     attgccttat gagggaaaaa gacggttaga ctttgcaagg tatgtattac ggtgagaagg       420
     acggaaggtt gcaattacga ggctcaaacc agacacgtaa ctaacaagtt acaagagtat       480
     gtgccctgga ggcgaaaggg ttgcacctga caagggttta tggggccgaa catgagtgag       540
     cgagagggaa tgactcttgc tacagcagta atagttgggt cgagtaaaat ttctaccgac       600
     caaccaaact acacagactt gcttctcttt tcccaagtct cccaatatca tcatggagaa       660
     gggaaaaggc aaccgtaaag tgtgtgcaat gtcttaaatg gacaagttgg atgaaaaaaa       720
     ggtggagtgc aaccttttaa tgactagtag tgcaactcct attatggagg aagagcaaat       780
     gatggtgttc aatggtggaa ataatgaaca tggatgcaaa aaatatgcat atgcaaagta       840
     attatggtgg aaataaaata caaattttta tttaaaaaac aaacaaatca aatccaaatt       900
     cagttcaact tcaaaaaatt caaattttta agaagaaatt atgaaaagtt gtaatgagcc       960
     ggttcatttt tattgatgca aatcagcaac atttgcatgt tttttgttgc ttagctcgct      1020
     cggaccgccg aataggggta gaagttttcc tctttcgtga tsgtggggct ggcggggatg      1080
     acggtggggg tggcagaatt ggtagaattg gcgagagcgg tggagattgt ggtgagacag      1140
     gccgagttgg tggcggcgac gacggagagg gaggtggagg ttgcagagcc ggtggaattg      1200
     gcgagagtgg tggagtttga ggcgagagtg ggcgtgttgg cggcggcgaa gacggagatg      1260
     gcagtggggg tggtagaatt ggtggagatt gtggcgagag tgccaccaaa ggtggatggg      1320
     gacgagaagc aagccgagga cgaaagattt caacgatgtt atcattgttt gcaactcgcg      1380
     tgcgagaacg cacaaagtca agcactcctt caagagtact atcacgaaaa aggtatttat      1440
     tttcttctat atcgaaaata agctggcctg ctacatgttt gcgtttcata aactctccca      1500
     gcgctgtctc gagatcagag ccaagtcgtt ggcaagattc tattgccgat acccacaagg      1560
     ccagcgctct ccccgaattt cctccgcttt cgaagtaggg gaacaagtgc cccgataatg      1620
     taccagcagg gtgtataaag aaagtttgcc ttaagcaggc tgaaaatgcg tccgctatat      1680
     ggcgaacaaa agaaagagaa gcagtcctat tattgtcaag cgggttatga tacgttccca      1740
     ttccgttgtc gcgatttaag attaataatg catattcatc gtggtcagag tctacaaaat      1800
     ctacttcttg gacgaagtgc caatggagga attcctcccg aaaacggatt aggaccacaa      1860
     tgatgcgtat cgcatcatta ttgcgaactt gaattagcaa ggaagggtct acacgcatgc      1920
     gagaattatc attaatgatt accgctttgg agccccatgt tgcaaaaaga caaaaatgcg      1980
     gtgggagttt tctcgtcccg gcgaaaaagt ctaactggac ccagtgaagg tccagcccat      2040
     cattgtccct gtagttccta taccatgatg cactggtccg gtaccttggg ggggtttcct      2100
     tcagcactag gctaatcgat ggaaaacgac gctggtagtg gaagtccaac ccacgccgaa      2160
     tgtttcgccc gatggagaac ccgtcggcgc cctccaagat gcccgcgttc atgaccgcct      2220
     caaagaactg ataataaaat aataataata cgtatgttat gtattacata actaaaactc      2280
     ttagaatgat actgattaat gattagtaat ttaagaggct tacagtcggt ttggtacaag      2340
     gattgatcat cctcgtcacg gtgttagaca gactcgtcat ctgcatccgt gcagatgtca      2400
     tggcgttgta gacgctttgg agcctgggac tcaatgcttc cgattttcgc agtttcttcg      2460
     ccaattgcat gacatcatcc acttcaatac tcatgcgctc gagagcgcaa aagaattttg      2520
     cagccttaaa aaataaggcg tagtccatgg cgtgggtgtt gccaaacgag ggtgatgaga      2580
     tgaacatgtt taaaagtttt cgcgaacttt taacaactga aactgtagtt tgagtaacaa      2640
     gtgtgatttg aagacgagac ttgataagta agaagcaaaa tcgcaactga aagaaataat      2700
     cagttggaag gagaaaggaa gacaggaaac aaaagggaaa agaaaatgca ctcttttaca      2760
     agaaaggatc tatttatgag tatcatgctg agaagcaata aaaaaaagac ttgcactctt      2820
     ttcgaggaag cagaaaagga ttgatttatt tgaaggttta ctcaataatt taacaagaga      2880
     gtgacacaga cagcagagtc aaacttttgt caattgtatt tcttccaaga aatgagatga      2940
     aaaaaaggtt tgagcatagt tattttcatc aaacgtttcc cacgaatgac aagaaaagga      3000
     tctggttgaa aatgaccagt attttcatca agattagaga atgcacctaa aacaagaaaa      3060
     cgttcttcca agaaaatgga aaaatgacca gtatttttat aaatatgaga aatgcggtta      3120
     aaaataaacg ttcgcttgca ggaaatgaga tgaaaatgtc cagtaattct taaatgaaac      3180
     gtttcctcag aataaaagta gcaaagagga ggaaaataag ttagtagaaa gagtaacatc      3240
     gtgcaaacct gtggcaaaat gagaatttct gattttatag ttccagtggc tactggttat      3300
     cattgcttat tatgtagcga agcaaattct aattcacttc gtatcatcaa atatcatata      3360
     aaaaataaac atgttcaaca atgtgacaac tgccaaaaag aagttattca gcctcatatc      3420
     tgcgataaaa tctgtgcctt gtgtatgcaa atacatagta atttgtgtgg tatctgctct      3480
     ggtaatcatt gcccaagtgt gtgccaactc gtcggtgaat taataagtga tgaaaaatgc      3540
     gattactgcc aggaaagtca tgatattagt tcatgttcca aagttggtga agttatggac      3600
     gtagattatt ctcaaaaaga cgatccaatt gccggaacca gcaagtaagt aaagtttttg      3660
     agattatgaa tgcagtatta cgcagagggg tagtttagcc cacatgaagg gcaaaagagg      3720
     ggaagtaaag gtcagactag ggtttatgat cttaaagtgt aagcagcctc gctgcggcgc      3780
     gaacagttgc ataacatcgc ggttatgtct cagattacct caaatatctc acattgcccg      3840
     gtgtctcaga ttaccccaaa tattgtctca gattacccag ggtctcagat taccccaaat      3900
     atctcacatt gcccccggtg tctcagttta ccccaaatat ctcatattac cccatgtctc      3960
     agattacccc aaatatctca gattacccca aatatctcag attccccaaa tatctcatat      4020
     taccccaaat atctcagatt accccgtgtc tcagattacc ccaaatttct aaaattgtcc      4080
     ccaaatgtct cagattgcct cccgtgcctc agattactgg tttaccttta gcttagtggg      4140
     tttttcttac cttttccagc aacaaacgtc caagtgatga gcctactccc tctccaaaac      4200
     gttggcgtga agaacctgac atgaccatgt acatcaacaa gtgttgtccc cagtgttcaa      4260
     aaaaattctg caccaattat gagttggatc atcacatgca gaaagaacac ccctacaagg      4320
     gaattcctat tcaagttggt ggtggattaa ttaagaggta cttgccccta acaagaagct      4380
     tgtacacagg cttgatcaat gtgtacgaac tggatgtgaa gaacaatgag tttaaagatg      4440
     cgtttcaatt ctttgaaacc atcttttccg agcttgagtt cattctgaac caagaactag      4500
     atgaaaagaa atgtctgaag atctcgtcag aactaaagtg tcacttttat aagacgtcag      4560
     tggatccagt caccatgcaa atgatagttt ctgaccgtac taatcctgac cctgtatttc      4620
     gcggagttac ccactcagtt taccgttctg attcaatcag aacgatcgtc aactcactcg      4680
     cctggaaaat gtgtaactca gtagcagctt atatcaacaa aaagtctggc tggatcttgg      4740
     attttgtgtc tggctttgag attagcgtcg gaagattcca accaattgga ggaacaggat      4800
     tcaagacacg gaacaattta ttgaaatatg ttagccccgc tacagtgtta tcgattgaca      4860
     atacggatcc aatgactggt cgaccagacc aaaattgttt ttcactgagt attttggcat      4920
     caaaaattct gcccagcttg aaggctcaat ataaggaaca tgtgaaccgt ctccaagaga      4980
     aacggtctac ttatattaat gaactgaaca aacatgggtt caactgggat ggtttatcaa      5040
     cacctattga tatgtctcaa ttttcaacgt tctctaagaa caatcccgat gtcgatctgc      5100
     acgtgtttgt ctatgaagaa gaagatgctg ctaagcaact ttactctgac ctgttaagca      5160
     agccgactcg caccgctaag gataaactac aaatcaaaaa agaaatccgc aattccatct      5220
     atccacttta ctcttcaaac aagattcccc agttccgtgt taaagaaaga atcttaaaac      5280
     acacccatgc cgatactgaa gtttcaaatc ttcaggaaat cgacattctt ttgattttgg      5340
     aggaaactga acagggatgg acagggcact atgccttgat acgcaatttc aacgctctaa      5400
     tctcgctcac tamaaacaag tcatattgtt gtaaaaattg cgtgaactgc ttcaccagcg      5460
     aagaccgatt gaacgaacac cgtcccaact gcttggcgct aggaatgcag caagtgacta      5520
     tgccagaaga caagacgtat tccttcaaca aatatggccg gatggtaaaa gctcctttca      5580
     ggtacttgat aatttttcta cactctgcta tcttttctaa atatctttca tcttttcaaa      5640
     gatattttgg cgattttgag tcactgttaa gaagcaaaaa cgcccgtctc cctgaaagtg      5700
     aacgtcaact tcatctagcc gaacacacac catcaggtta tgcgtggatt tgcctggatt      5760
     ggaataatac aatagtctct tacaaggtac atcgggcaaa gcgcgacgat gaaaacgttg      5820
     tggcgagatt ttttgaagac atttttgagg atcaggaaat acgacaagaa gaaattgaaa      5880
     gcatacagaa ggaagcaaaa tataatatga aaattaatcc tcaactaaag aaacgtctga      5940
     ctcatctaat tgagaatgac cctgacagtc tcgacccatg ctacttttgc aaaaagaaat      6000
     tacaagtaaa cccaaaggat aaaaccgttt ttcaccacga tcacttttct cgtcaatttc      6060
     ttgggttggc ccatgacagg tagatcaaaa tagaatgatt aatccgttta tgttactcat      6120
     catacttttt atttttgtag ttgcaatatt gatgcccgta ttagacgagt acctcctgtt      6180
     tactttcacg gacttaggta aacatatact tattaatttt aaaatataaa agttaagatc      6240
     aatttgtaat gcagaaatta cgatgctcac ttcctggtat caaatttcac cgcggacatg      6300
     gatgtagaag ttatcccatg taccagtgag aggtttgtaa atatttttaa atcaaatttt      6360
     tgattttgtt gacaagtaat ttttttgtta ggtttctctc cttctcggta cagaggggaa      6420
     aacgtaaggt gaggtttgtg gatagcgccg ccgtgatgcc agcctcaatt gacaagttgt      6480
     caaaatccct tgcccatggc aacaacacgg aacatttcaa gacgaccaag aaaatgtttt      6540
     ccagttccaa cggacgaacc gccctcttcc gcgatgggaa tgttgaactg ttaatgggga      6600
     aaggaatcta tccctacact tatatgcaat ccttggagaa cttcaaagag gagaaattac      6660
     caggaattga acatttcttc aatgacctca ccgaggagcc ctgttcccca aaagactacc      6720
     aaaacgccca aaaggtttgg gacagttata aaatcaaaaa cttgggggaa tggcatgatc      6780
     tatactgttt actggacgtc agcattctcg ccgattgtct cgagaggact agagatattt      6840
     tgtgggattc ctacgggttg gacgtggcgc actacctaag cctccccatg gtggccttcg      6900
     atggagtctg caaactcggg aacgttgaac tggagtactt gggcttagac gagtaccaat      6960
     ggttcgaaac tggagttcgc gggggggtct gtggagccgg gggaatgagg attgcgcagg      7020
     caaacaaccc ttacatgcaa gaattgcatg ataaaaataa accaacgtcg tatatatctt      7080
     ttttagatat caacaatttg tatggtaaga actttttgtt tccgccaaaa aattatttgc      7140
     ttcttttaaa aatgtgatca ctccttagga tctgcaatgt gtgaattcct accattaaag      7200
     gactacaagt ggatgactca accccagctc gattctgtat ccctcgatcc tcacaagttt      7260
     ttcaactctg ttgccgatga cgctaccact ggttactttt tcgaaattga tataatcgca      7320
     cccccagaga cccataacaa gctaaatgac tacccccctg ctccaacaca tcgtataatt      7380
     acctcagaag aactatccga attccaacaa catcaagtag agcaattgga aattccaaac      7440
     tcagccttta cgacttcaaa actagtggcg gacttgaacc cgaagctgaa ttatgtctgt      7500
     cactatagaa acattaaacg ttttctacaa ttggggctca agattacaaa ggtttgtacc      7560
     tttctttata gtgcttttaa tataaaacta acattgatat ataaatagat tcatcgaggc      7620
     atgcagttta cccaggctcc gtggatgaaa aattttgtcg acttcaacac tagaaaacgt      7680
     attgaagcgg tcacggagta cgagaagaac ttctacaagc ttcttaataa tgcggccttc      7740
     gggaaggtgg ttacaccccc tcaaaattaa ccacaccccc aaaaaaattt ttttgtcttt      7800
     tgggcgccaa cttttcgact tttttctaaa aataactttt ttttttggtt cttatttgca      7860
     gtgcatagaa aacaagagaa aacgacaatc catgagtgtc atcagcacag aagctcaaat      7920
     gaaacgcgtt ctccgcaaac caacatatca aagaattatt gagatcaaca aagacgttca      7980
     aattgcagtc aagaagcgta tggcagtcta cttggacaaa ccgattgcag tgggcgtggc      8040
     tatcttggat atcagtaaaa ctatgatgta tgattttcac tatgactata tggtgccaaa      8100
     gtatggggat gctgcgaaag tcttgtatgg agacacaggt gctgaacgtt ttcctgcttt      8160
     gcagacaaat tttaaaaaac gttttcctgc agtcaaagtt ttaaaaaaac gttttcctgt      8220
     tatttcagac tctcttgttt attttgtgga gacggaagat atttacaagg acatgcaggc      8280
     caatagtgac atgtttgacc tgagcgagca tggagggata ctagagttca tgaaggatcc      8340
     aaccaaccac aaacgtttaa agaaaatgaa ggatgaattt ggctcagcgg ttctgtggaa      8400
     gtttgccgtt gcaaagccaa aaatgtatgc tgcagaagcg ataacatggg atgctgaagg      8460
     aaacatgatc aagaaaatca agattgcagc aaaaggatgt aaaagttctg ccatcgctca      8520
     tcagatttcc tatgatttaa ttgatgatat tataaatcga tgtcatcagg aacaaatttc      8580
     cttcaggagc atagttagta gtaaacatac cattaatacc atattttgca agaaaaatgc      8640
     gttaaatgga tttgatacta aaagatttat tgtaaatcca atgttgacat atgctcacgg      8700
     tcatgttgat gcgcccaaat atattgccga gcaagctctt ttaaattcac aaggtttttg      8760
     taatcacaac attttgtgta gaggataaat tgattgaatt tttgtaaata aatctcatta      8820
     acagtacagc aaccatggaa gcttgtaacg acgttgatat tcgcttaaaa acaccattta      8880
     cattaactat ggcaggcggt acccagagcg ggaagagcac gctgacagcc aagatcataa      8940
     aacgtcgcat ggaaataatg catccgccca ttgcatcagt tcattattgc taccaagagt      9000
     accagccagc tctgtttgag caaataaaaa aggacgcccc atccattgta ttccagaagg      9060
     gtctgcccac agagtttgga ggagatggcg aacccttatt gctgatacta gatgatctaa      9120
     tgaccgatgt agcaaaatct gaagaaatgg tcaaggcgtt tacaatatat agccatcata      9180
     ataatatttc aattatattt ttaactcaaa attttttcga gaaaggtaaa actagaagta      9240
     ttactttaaa ctcaaaatat attgttgctt tgaagaatcc tcgagacacc acttttgttg      9300
     cacagcttgg tcggcaaatg aatggtggta aaaataatcc tgtccttcaa tttgcatttg      9360
     acgatgttat gaaaaaaccg tatggttatc ttgtaataga tttaagtcag acacaagacg      9420
     agcgttacag gtttaggtca agtttatttg aggaagattg tataatatac acaaagaatg      9480
     aataaattaa gtttgcttag aactcgaagt agcatgatct atcaagttct ttcgatatgc      9540
     aattactgaa atgtccacca aatcctttag aaaacaagct agagatgccg agttgatttg      9600
     aattttctgc tcaagtccct caatcgtctg gctaatggtg atgagcgtgt ttcctttggt      9660
     tgattcagta cttaaaacgt atgaacgact tcttttttgt atgcattttc gtttaggtaa      9720
     atgaataaga gtgtcaaaaa actctgcatc agatatgctc tctggtggtg atgccataat      9780
     gaagtcaaaa ctacaaatga ttacaatatt tacattttat tgatataaaa accaaaaaga      9840
     gcgcgagctc agggacctag gtatagatat ggcaataagc caaagttgta tatgtttaca      9900
     taggaatata tatggcaata agccaaagtt gtatatgttt acataggaat atatatggca      9960
     ataagccaaa gttgtatatg tttacataga tttgccatat tggcatatat atggcaataa     10020
     gccatatgtt gtatatgttt acatagattt gccatattgg catacttagc ataaggttaa     10080
     gcccggcgcg tcccacgaag cgtgatcacc agcagaatgc tcacaaattc cacactgtat     10140
     accataaaca tcgagtgggg gtggtcctga agggcagccc ttgtgttgtc gataaccttg     10200
     cacatcatcc tgggcaataa atcgttgggt aagaaacctg tgctttattc ggctttccat     10260
     cttggataga gttggctcct tatttttgtc aaatggggca atacccgtcc actgcctaaa     10320
     tgggtatgtt ttcggtttgt actggagtgg aagttcggga ttggtcagat atgtccccct     10380
     cttgtgttgc ttattattca tatcctccag caaactctga cactcacttg aaaaaaatgc     10440
     aatgtcccgc gatgaggcag gcgagtcacg agcaaccagt actaaattta gtgccaaatg     10500
     tagcactgat tcaatttcaa cttcaatact tccagtcgca ttctccaaaa caacacggtc     10560
     actcaaaaaa tgaagaggag aatacgagtt gccatggagt ttgtacgctc catgtttcag     10620
     aaaagtttgc aaaagtccaa aggactcttg aacaggaaaa actttttgat cgttcgacga     10680
     ctccatcgca actgaaggtt tacaggctag tatcttgcac tttatagctc ggctgcaacg     10740
     ttttcttttc actcttgggt atattcttgt tgcatccttc aaaatacgtt ttaataaggt     10800
     cttcttgagg ttttaatgga catggagtct ttacgtcaaa cggacgaacc caattatccc     10860
     tgttatactg agaaggtcgg ggtttgcctt caagcatagc tttagaactt cttctatatt     10920
     cttccaaatc ttcgtaccga aaaggtcttg agaggccagc ttcaagcatg cgtagtgaaa     10980
     tgtcaaagag ttgaagttga tgaaattcca cacgtccagt gtcgttcatc aagacataaa     11040
     gactccgtgg tgcgcactcg gctattccat tagccgaaac caaatattga ccgtcctttg     11100
     gatatagcga tagataacct ccacacgttt cataaaattg aaaatgattg gcgtaaagca     11160
     tggggttcac aactattgta ccgtccgagt tagagtgtaa ggatttcttg cgaggtagtt     11220
     ttgacggttt gggttttcta aatttttcca cgtctggtcg acgttttttc tttatgttat     11280
     ccttctccat acttgagttg ttgttgttgc gtgaacgttt ggagcaaaac tagttgaatt     11340
     cggcattatt tcgtgcttta tattctcgaa aaaatatata agaaactcac gatagtacgc     11400
     catacagtaa actagtgtca caataaaaaa tattccaaca aagagaataa gtacaacgca     11460
     caaacagccg agcactgctt gacagaattc aagcatacaa cgttcacact ttgtcttttt     11520
     tcgacggggg gtctccatcc taacgttttt agactagtcc aagagtaaca tatgtaaagt     11580
     ttttagtagt gtcaatatga tgatctaata ctatgcgtaa gctggcaaat gttcctatat     11640
     acatgatata acttgtaaca aaaataagac aggaaatgca aaggattatg aacgagtaaa     11700
     aacgttctat aaacgttttt actgactgag ctacagactc cattactatg gtcttgttgt     11760
     cacaaactgc aaaactcaaa tgattgtttt actgtatgta aacttgcttt ttagtcaagt     11820
     cccatgaact tgaaaggaaa aggtctggta accacaaaat gatgatccaa cactatacgt     11880
     attgtagcaa atgaaccact atatataatg taactgagta ccaaaagaaa gcaagaaatg     11940
     aatatgaaaa tgtatgagtt tcgttcaaca aacgttttcg tctttgatgc ttccatgctc     12000
     cttggatagc tgtatcatgc aaatacaaga ttcaaactga ttacaaaaca atggtgtgta     12060
     taccaattta tttactcttg aaaaaaaatc aaataattac atttttgtca attgcccgca     12120
     gttacatttt tctggaacga aaaaaactgg aaccgtaact tcacgtaaat ctacatagtc     12180
     cttcatccat gtctgcccct ctgaatccac cagccaggcg ttcttccgct ttccattggt     12240
     attgggtgga aaatcaccat actttgctac ccgtttccat tttcgcaact caaagtattt     12300
     tgctggccag ttaccacgaa attggtgatg gggatgcatg catggctttg cgtccttccc     12360
     atctgtaatg gtcttgtcat ttggttcttc ctcgccatcc ttgggtttgc atagctcctc     12420
     caaaactcct tcccaaatct ttacgtcttg atttgcttca gtacgaaact tttgccaaat     12480
     ctgccccgtt tcgtcaatcc caaaaacgta gaccccctct ttctcggsta tgtctgccca     12540
     gtcatcttcc gcaactggtg tccatccaga cgtctcatag tactcagcca tcatcattat     12600
     gtcaaacttg ggcttggttg gttttgtacg ttttcgaatt tcacgcaaca tcctcttctt     12660
     ggcacacatt tcggctggtg agataatgcc ataattctgc aacggatgtt cgtataaatt     12720
     caacagccat gggttgagca ggatatcagt ttggatttca caacccagca cttttctttc     12780
     ttcatcttct tcatcttcat ctttggcttg gttaaagtcg ggaattgaaa cactaaccca     12840
     gttattcata acataaaact tgggtgtagc tccctctcga acttcgttga atccaagctt     12900
     catcatttct cctttcaatc tttcgtaggt gtttgccatg tggagatctt cacaggcgta     12960
     caggatttcg cttaaaaatc gttcaaagca ttggaaaaat gcaatgtatc gaccctcatc     13020
     gccaaccacg agagggaatg cagtcttgac aattttgtgg ataacatccc atgaatcgtc     13080
     aagtttgaaa ttaacggaca ctccttcttg cttgataaac acatagtagt cgtcattgaa     13140
     ggggcttacc caaatggctg gattctcact tctatacgca agcttgcttt ctttgaatcc     13200
     atgttcttcg gcctcttcgt agagcattcg gctcgcaaag aaagggaact cttggtacat     13260
     ctgcatgcaa agcgtactca gttggactcg tatagcagga tccttgtgca ttgctccaac     13320
     gagtcgttta atcacgtaga aacaggttgg cagatccaag tagatgcact ttttctttct     13380
     ttcaattaca atttggatct tttcaagtaa ctcgttagaa tacacttgga tgatccgatc     13440
     atcttcaatc tttattttct tgtcgtcggt tgcaagagta gaggtttcca attctcgctt     13500
     gtcagctcgg gttgcagaag attgggtggg gttggcactt ggggttgcag cagacgtcgg     13560
     aaaagtgggg ttgcccttct cttcttggtt tggggaagca ggggaatttg ggggtgggac     13620
     aattcccgaa atgttggatt gttttgtagc cataatgatt ttcgaaaact tggttgggtt     13680
     tacaaacttg atgattactt tgtgaaagta gagtaaagac tgtactgacg actgaaaaat     13740
     tcactcgctt cttatagtgg aggagacgtt tttccaccaa tgctattgta atagtggtca     13800
     acagcatcga ttggctgtga atacaacatt ggaggggtta tggatctttt atcgtccgtt     13860
     tcgtaaaagg tcggtagtgc gatggagaac cttttcaagt cttcaacttc tctttcgttg     13920
     tgctcctgta ttagtcgtgt tatttcagaa cgtagtgtga gtgcagacaa aacgtttcct     13980
     ccatttttca tgtaaaacgt tagcaattgt tcacatagtc gaggcacttc atgaatgtca     14040
     aactcaatgc ggttcgtctc cttggaaaga tttattgttg tgtttgtact tgttttctta     14100
     aaccaagctt taagtttcat gaaacgttct tgctctgttt gggactcttc ctccaacctc     14160
     gactgaaaag gaattcctct gttgtataac cttgggctaa gtaggtagtc cattgtcctg     14220
     cttcgtcaaa cgattactga ttataatata gtgtgctgtt cttccttttt gtatttttct     14280
     ggaaacgttt ctagatatac aatcccgcat tgaatgcata aaagcatcca atttgggctc     14340
     tctaaatagt tatgataacg ttttgtagtt ttcttacacg agtcacactt tcgtccaaca     14400
     cttgataatg caaactcaat atcaaaaact tctatagagt tattctcgtt gctcggatta     14460
     tcaacttgag aagaacagca caaggatttg gcacaaatac aacaattgga cttgaaccta     14520
     gcaaatatgc cagagatctg tgatactagt cctcttatgc actccatcat attttttgca     14580
     tttcttctcg gtagaatcct ccttccaaaa tgtctccttt aagatcacga agaatatatg     14640
     tacgggggaa tgtcgttttt atttcgttaa ctataaactt ttctttattg aaattagctg     14700
     aagcaccttt ttcgaatatt ttcttcactt ttgagattaa gacaacgtca ttcactttga     14760
     atttttcttg acgagtatcc gttgctccaa ttaatttgtt gtataagcgc gcaaacacaa     14820
     tttgctcgtt cttcttgtta acttcctttg gtgcacactt tatacttctg tgatatgaag     14880
     agttgtagtt gttttcaaga tctgatagtc gatcaacaaa tttagttgtt tcatagtttg     14940
     tcataaatct atgaattttt tccaaaattg tgcgattgaa cctctcaacc acgcaagatt     15000
     tgagttctga ctgaactgaa aacaatttta tcccaagatc ttcaaggaat tctttacaat     15060
     gaacgttata aaactcacgc ccaagatcaa cttgtatgcg aagaggcagt cctttgcttc     15120
     ttttaaaaat cttttcaata cctttcatta caactagacc actcttattt ttgagcggtt     15180
     caatatatcc tcgcttggaa aaaatatcta ttgccgtaag caaaaaatgc gtgttgtaat     15240
     tggtctttga atatttagaa acatccatca ggtccattcc ccactgatcg tttatgtgct     15300
     ttacgtatac cacacgtctc ggaaaaatct ttctacgaga ccggtgtaac gtataagcag     15360
     gaatagtttt caaaacgttt tcgatttctc gacgagattc ttttcgtttt ccagacttta     15420
     tgaaacctcc tagtccgctc aaggagcctg ggttcttgac gtttaggtag gaggacttaa     15480
     tccttgctgc acttgctgaa cccattatca taactgacta ctatataaaa ccaacgtttg     15540
     cagatatagg gcatagtcat gataaggact ctgactgatt atggctccga aaaatcgtgt     15600
     taagctccat gcttcttact tgcatcgtct atgtaggagc aaacccaagg acagaaaact     15660
     gcttataaat aaagcaacag gagaacaaat tcgttccatt tgtgaacttt gcctcaatct     15720
     aaacaacaga aatattcctg tgacaaaggc tcagaaaaat aaattattgc gacacaagac     15780
     tgccatacaa aaactttgtt taaagtcacc aatcaaaagt aaaaagaagt acttgtgtca     15840
     aaaggggggc tttcttcctg tgctagttcc gattttaacc acattagttg gtggacttgt     15900
     tggaaaatgg ctagaaaaat gaaagtggta ccagaaagtt ggtacaagaa aatcttggcg     15960
     ttgaattctc aacaagatgt tgacttggat cttgaagaga aactgaaagc tgagaaaacc     16020
     aacatttttg gaaactctac aatacctgac gaagtaaaga tcttgctttt gcaaaattta     16080
     aatcgacaac ttattgataa caagaggcag gatgacaaaa agccactact tgtgaagaat     16140
     gcagagaacg aaactgctac tgaacagccc tcaacagtga tttcaaaacc aacacgtgaa     16200
     gtttcaggtg ctactctaga tgtgctttta aataacacaa ctggacgggg acggaaaatt     16260
     ctcgagtttc ttcaagcaaa tggtgtaaaa ataactgctg ataaggttat tgtaaatgat     16320
     gtgacatata cgttgaagaa gatgaacgcg cttctcgttg gattatgtca tggattctcg     16380
     gcaaaatcca ctctcaaatc ggatccatca atgttgaatt tgctgcagtt tataaagtcc     16440
     aagtcccctc cagccgatct ctttccaacc accgtcaacc aatttattgt caagcagaag     16500
     gggagtggtc tgaaaagaaa gcagctgaag aagaagaaga caaagaagca gagtgcatgg     16560
     attcaaaaga aggtgcacga acacaggatt aacaaattga cgaggaaaat gcaaaagtgg     16620
     aacccatttt aatttcgtac aaaatttatt gaattttgat gaattttctt gttacaacat     16680
     ttttgattta ataaatgaat cttgttattt ataaattctt tgactaatct atcattttta     16740
     gaataatcct ttgaaaaatt actgtacaca tttcttacac taaaaccatt tactcgtttc     16800
     cataaaaacc aaattgagta gtgcccgcat acgttactgt ttggagattg taattggaca     16860
     caattttgta ttgcaccagt tccatgtcgt tcgataaatt cacgaaaatt acttgcataa     16920
     gcatcaactc ctactccata actgcagaaa aaatttattg gtaggttcct gttttcaata     16980
     aacatgcatg tccagtgttc gcctggatga gaagtgggac ggttattgat tacaatagca     17040
     ataggataat gttctaaaac aagttcatcc aactcatcac aggcacaaac atcaaaggta     17100
     attttatttt tacaaaacag tcctgctaga attcggtaaa tctgatccgt gttcattttt     17160
     acatggagta gtccttaaag taaatatgtc gattcttgtc aacgtacaaa actgattgat     17220
     aatcacaatg acaaagaact gttagggcag acgtagttgc atttcgtaac tttatctcga     17280
     ttttcacact tccatgtctt ggtatggcga acccatcatg ttggtgtctc aagtcaaaaa     17340
     catagagagt ttttccagtt ttaaaaatat cgaacgttag ttctattcca gtgtcaagat     17400
     ttgatagacc cagtcccgaa aatacgctaa agtacgcttc aatacttttc ttattatcga     17460
     aatcaagttc aaacgtttga gatgttactt gctcagagtt cacggttaca gtgatgcttg     17520
     atatatctgc ttgaagaaag ttaaatgggt tttcattgta atgtccgtgt acagctttac     17580
     tcgagacgat gccgactaca agacgatctg gcaaaagacc cgtaattaga ctctcgtttg     17640
     tatactgtag tgttccggca gatagggaaa atgatttcat gtctcctctt cgcattggat     17700
     agcatgcagg ttgacccttt tccattaatc ttaaatgtcc cattgtaatt gatggaagta     17760
     gagtatgctt ttggacaaca aatttagctt ccataatgtg aagttgtgct gcatcttgtg     17820
     ctgatccgga ggtcttgctt agcagacaaa aactgtctgg tgctcgatat agtacaattt     17880
     ttatatcaat tcctgggatg caaaatcggt tttggttaaa tatatccgtc ttcagttttc     17940
     cacacagttc aaacactttg ctattatttg ccagtttctc tcgagttttc cacccttcat     18000
     ctcctgtggt tggatctgct tctttgtgat acagagcagc cattgcttga gtcttggtat     18060
     actctttgcc aaaagatagc agagtctcca agtaagcctt gtatgggtat aatgaagttg     18120
     gggaagtgat ttgcgtatca ttaaaataaa tagcaacttg actaaacatt gaatgtagaa     18180
     aattgttaac tggcgcagta tcagtttgag cagcatccct atcagctccc ttgctatcta     18240
     caatcttgca gcgaatatag agttgtgttt cagaaaagtc aatgtattgt gaatcatttc     18300
     cttgaataat aaatgtcaga ggagtggatc gatctgaaat gtttgttatt ggatgataat     18360
     caactcggtg tgagctggca agagtcaagt cgtagccggg ttcagagaat agatcagtct     18420
     ctgaccgaat aaagttaaca atttgctttg gtttagccat tttctcaatc aaacaaggat     18480
     ggtttggaaa taagctttcg tcttgacgat ttcttcttct tcttcttcgt tttcgacttt     18540
     gattttaaac gtttgagagg tttacgtttt ggctttcgtt tgattttacg ttttgttggt     18600
     ttacgagttc ttgcttgacg ttttcgaact ctccttcttc gtctaatcct accaccagac     18660
     tggttgagta aattcgttcc agcctctttt aaggcactca ttgcattcga acgcaaagaa     18720
     tctttgaaag attgcttatt atttataaca tccattgcga tatttttaac tgctgacttt     18780
     atgggaggca caacgtgtgg taacagtgat tttacaaaag gtagtaaacg actggctatg     18840
     gcgccaaaaa ctccaccaag accagctccc ttttgtcgat aataacttgc cttataagcc     18900
     aatgatcctc caatctgagg ttcgtaggct tggtagtaat catcataatc gttttctgaa     18960
     tacattttag aaacgttttc ttctaaaatg aagtgtagca ctaaaacttc caaatgagaa     19020
     tggaggaggt tcaccaaact cgttccttat atacatgtga atatagtcca tggatggttt     19080
     tgccactgag acatattgta aattgttgaa cgtttttgaa acaattttat caatatcagt     19140
     ataaggattt acaagcgatc ttaggattgg tgctgtggta tcgcccacat gctggttttc     19200
     gacaatgtca caataaatat aatatctcga gttatttgat ttaaagttga atttataatc     19260
     tgcttgtaag cttgagttac aatgaatttg atgagggaat ccaagtatgt tggccatttg     19320
     cgtattaaat tgaaaatcgt agactacatc ttcttcaact gtccgagtgg ataaaagagt     19380
     atatccgttg taatgtttaa acaaaaagtc ctttgtagac attgcttcaa gtaaatcgtc     19440
     aaatgtttcg atattagtat tgttgcaaac tgttatccat tcatcctgag ttttatactc     19500
     ggaatacgta ttatttttaa acaagtcaag tgacacaata ttattataaa ttgttttgtt     19560
     ttcatttacg gggctattaa tgtcattact ttttattaac actttgtaca attcatcgcc     19620
     ctttccaaaa cgaattggtg tagatggata agcacattct accaaggcta cttcgtacga     19680
     gttgggctcc aaaattattg gtgagcataa ccaatttcta aagcttgata tcgtattatc     19740
     ttgaaagtga gaaaatgagg agttgctctc aatgtgaaca taaaaggacg acatgatgac     19800
     gtttcttcaa ttctgaggac taaactcgtg tgacgttcac aaaatttttg taagccattt     19860
     tatagtcaat tttcggggtt tttattaatc gtcgaacatg taacaagcaa accctgcaat     19920
     cagttttatt ttggatttcg tactctgaca attcggtttc gtaaccgtct tgagataagg     19980
     tttggtttga ttttccactt tcaattatag aatatgagca gattattacg agtaacgtta     20040
     tatcaaatgc caagataaaa aggctcaacc aaactaaatg tttgggcaca cagtagaaag     20100
     gcatttttaa acttgaagac tctgcgagta actaagaatt gaatgagtat tacttgtcta     20160
     tatagaggta aaatgattcg ttgatggttt ttaagataag tggggaattt gagacaattg     20220
     gggtaaattg agatacttga ataaaatgag acaaataggg taaattgaga catttttgat     20280
     aatttagtct caaacgtccc gccatcattt cttctcaacc catgtacccc catctgaaag     20340
     atttttttcc ataagaaata cattgttggg gtaatttgag attttgggta attttagtaa     20400
     tttggggtaa tcagagacac caggataatc tatggcacgg gggtaaactg agatatttgg     20460
     ggcaatttga gaagtcccgc cattattttt cgacacatga aaatacatct gagactttgg     20520
     ttactataag cagtcagcat atccttgcaa tacataccca tgctataaag gccttgtggc     20580
     gagaagccct aaccgtcttt ttccctcata aggcaatgta tggtggcgag aacccatatt     20640
     ttttcccgta aggaaaagta tgtggcgagg agccctcttt ttcctcataa gaagtgtgtg     20700
     atgaggaccc gtcttttttt cccataagaa atagagtggg cgagaaatcc gtggcttctc     20760
     ccataagaaa taaagcgggc gagaaatccg ttggcttctc ccataagaaa taaagcgggc     20820
     gagaaatcct tggcgagaaa acctagccaa ggatttcccc ataagaaata aagcgggcga     20880
     gaaatctttg gcgaaaaaac ctagacactt ctactact                             20918
//
ID   Polinton-3_LMi repbase;    DNA;    INV; 5107 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 19.11, Created)
DT   12-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5107
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3022-3022 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. 3'-half is not covered.
XX
FH   Key           Location/Qualifiers
FT   CDS           4243..3428
FT                 /product="Polinton-3_LMi_2p"
FT                 /translation="MFTMDESCAKRIKINDDTLKWICKDSAFKGRICTGMI
FT                 VNELGFKDPNEFVRACRPLFVTKVQELNQPLKINVSLACKFVLPKSGKERV
FT                 MYINTKNTPLFPLDDDVIDWYSTNITERILRNLETFQARDSGWALKEILKL
FT                 CINVNVNKGFYVGAHKKLPKVIANKHAVVNIDSGYDDDVYCFKWSIIAALY
FT                 PANENVCRLSNYLPYTDSLNFEGISFPAELKDVTTFEKNNATVSINVYGIQ
FT                 ISEQEWLTIGGDEDYKGKKFTVVPLHVFKKL"
FT   CDS           join(3205..1925,1940..1455,1500..949,986..708)
FT                 /product="Polinton-3_LMi_1p"
FT                 /translation="MPKGEKQYIKFNNYSHQIKSAFIIYADIECLLLPGSD
FT                 NDMHSHKPYSIAYYLHCTYNSEYSKFQLYRGSDCMQWFSKQLYLLADQIKN
FT                 YLLQNKKMNISSEEEQEFQTAKICHICKEHFSKSDIKHRDHCHFTGRFRGA
FT                 AHAACNINYRPNFTVPVVMHNLTNYDSHFIIMNLCEDSERQVNPGRVSVIA
FT                 SNMEKYKTFSKSIAVDYRQDIKFRFIDSFNFLICSLEKCVSYLHPDELKIT
FT                 RQFFPEDEKFNLINKKGVFPYEYISSESVLIEEQLPPIDSFKSLLTGETTI
FT                 KDSDYQRACDVWRVFECKTLGEYSDLYLKTDVLLLADVFENFRTLCIKTYD
FT                 LDPAYYVTSPGLAWDALLKSTNVKLQLITDIDQLQFVERGIRGGIVHCSCR
FT                 HAIANNRFMSNYNQNEEESYIIYLDVNSLIAGRSYSWAMKQYLPISDFTWV
FT                 PADNFDVTKIADDSEIGYILEVDLDYPENIHDLHSDLPLCPEKMVPPPHSD
FT                 KAGIPKKLICTLYNKXNYVIHYRNLKQCLNNNLILRKIHRVLSFRQAPWMK
FT                 PYIDINAEKRMAATNDFEKKIFKLMNNSVFGKTIQNVRKMVMQRFWKNYXK
FT                 CSQNGDVKLVTKWDGRYGAAALIAKPNHKRSVIFKENLVAIELGRLNVVFD
FT                 KPIAVGMAILDISKTLLADFHYGYMLKQFPANHVKMCYTDTDSLIYHIKTA
FT                 NIYDVIRKDAHKWFDTSSYPADNKYNIPLVNKKVVGLMKDELNGDVITEFI
FT                 GLRAKMYALETEEQRIMRRAKGKQKNNGLCEELKDKTLFCKSLXIDDYRQC
FT                 VLNDIEKTVEQYVIRSKLHTVSTIKETKLALSSNDDKRYILNDKVSTLAWG
FT                 HFRERQLTAQQNE"
XX
SQ   Sequence 5107 BP; 1523 A; 959 C; 910 G; 1706 T; 9 other;
     agtaggtacg ctgtggggct tctggaacaa attgggacag cctgggattc aggagagaat        60
     gtgactttgg accgtctggt tgcctacctc gcaggggcat aacaagtggc gggcataaag       120
     gcaagatggc ggacataaac aatatggcgg acataaacaa tatggcggac ataaacaaga       180
     tggcggacat aaacaatatg gcgcacataa acaagatggc ggacataaac aaaatatggc       240
     ggcagtggca cacaaacaat atggcggaca taaacaacaa atggcggaca caaacaacaa       300
     gatggcggac ataaacaaca atatggcgga catataaaat gccaatactc tccagctatc       360
     ctattgcagc tctcagctca tttcagccac atttaatctg tgctgcgaaa tgacccagga       420
     ctcacggtga ggacgtggct gcaaggcgag tcccacctcc accctaccca accaaccaac       480
     caggggtgaa ttttatttac aatatttaca gtaactattt actttgtaca atgtataaaa       540
     gtactttagg ccttttgcgc gaattmagta aaacaagaat gggtctagtt atatttttat       600
     acattaagga cataaacttc actattagaa aaaattttta ttttcattta taatgttttc       660
     cgcactatta atttgtattg cagaaaaggt ttccacccta atagttactc attctgttgt       720
     gcagtcagct gtctttctcg aaagtgtccc caagctaaag tactgacttt atcattgagg       780
     atgtagcgtt tatcgtcgtt tgatgataaw gctaatttag tttcttttat tgtcgagaca       840
     gtgtgtagtt ttgatcgaat tacgtattgt tcaacagttt tctctatatc atttaacaca       900
     cattgtcgat agtcgtcaat asttaacgat ttgcagaaga gcgttttatc ctttagctct       960
     tcgcataatc cgttgttctt ctgtttctag tgcatacatt tttgccctca gwccwataaa      1020
     ttctgttata acatctccat ttaattcatc tttcattaaa cctacwacct ttttattcac      1080
     aagtggaatg ttatatttgt tgtctgcagg ataacttgat gtatcaaacc atttgtgwgc      1140
     atcttttcta atcacatcat aaatattggc ggtttttatg tggtaaatta ggctatctgt      1200
     gtcagtatag cacattttaa catggtttgc tggaaattgt tttaacatat aaccataatg      1260
     aaaatcagca agaagtgtct ttgatatgtc taaaatggcc atacccacag ctattggttt      1320
     atcaaatact acattgagtc ggcctaactc aatggctact aaattttcct taaatatgac      1380
     actcctttta tgatttggct tcgcaattaa agctgcagcg ccatagcgcc catcccattt      1440
     tgtcacgagt tttacatcac cattttgcga acattttgwa tagtttttcc aaaaacgctg      1500
     ttattcatta gtttgaaaat ttttttctca aagtcattgg tggcagccat acgtttctcg      1560
     gcattaatgt ctatataagg cttcatccat ggagcctgac ggaatgacaa tactctatga      1620
     atttttctta gaatgaggtt gttgtttaaa cattgtttta aatttcgata atgaatgaca      1680
     taattmtttt tattatataa tgtgcatatc agttttttag gtatgcctgc tttgtcagag      1740
     tgtggaggtg gcaccatttt ctcaggacat aaaggtagat ctgagtgtag atcatgaata      1800
     ttttctggat agtctaggtc aacttctaaa atataaccta tctctgaatc atcagctatt      1860
     tttgtcacat caaagttatc tgcaggcacc catgtgaaat cggagatagg taggtactgt      1920
     ttcatcgccc agctataaga ctattaacat caaggtaaat tatataagat tcttcttcat      1980
     tttgattata atttgacata aacctattgt tagcaatagc atgccgacat gagcaatgaa      2040
     caattccgcc tctgatgcct cgttcaacaa attgtaattg atcaatatct gtaattagtt      2100
     gtaattttac gttagtgctt tttaataaag cgtcccaggc taagccaggt gacgttacgt      2160
     aataagctgg gtccagatca tatgttttta tacagagtgt tcggaaattt tcaaatacat      2220
     cagccaatag taaaacatcc gtttttaaat ataaatcgga gtactcgcct aaggtcttgc      2280
     attcaaatac tcgccataca tcacatgccc gttggtaatc actatcttta atggttgttt      2340
     caccagtcag taagcttttg aacgaatcaa taggcggcaa ctgttcttct attaaaacag      2400
     actcgctact tatatattca tacggaaata cacccttctt attaatcaaa ttgaattttt      2460
     catcttcggg gaagaattgt cttgtaattt taagttcatc gggatgcaag taggagacgc      2520
     atttttctaa agaacaaatc aaaaagttga atgaatcaat aaatctaaat tttatgtctt      2580
     ggcggtaatc cacggcaatt gatttagaaa atgttttgta tttttccata tttgatgcga      2640
     ttactgaaac acggcctgga tttacttgtc tctctgagtc ttcgcacaga ttcattatta      2700
     taaagtggct atcataatta gttagattgt gcataactac cggcacagta aagtttggtc      2760
     tataatttat attacatgca gcatgcgctg ctcctcgaaa tcggcctgta aaatgacaat      2820
     ggtctctatg ttttatatct gatttactga aatgctcttt gcatatgtga caaatttttg      2880
     ccgtttgaaa ttcttgttcc tcctcagaac tgatattcat tttcttgttt tgcaacaaat      2940
     aattttttat ttgatctgcc aacagatata attgtttact gaaccattgc atacagtcag      3000
     atcctcgata taattgaaat ttagagtatt ccgaattata agtacaatga agataatagg      3060
     cgatgctata tggtttgtga ctgtgcatgt cattatcact tccgggtagt agcagacatt      3120
     ctatatctgc atatatgatg aatgccgact ttatttggtg gctatagttg ttaaatttta      3180
     tatattgctt ttctcctttg ggcatgatac tattgactgc tttaaattgt gaacaattta      3240
     ctagatgagc agccaacttt tcttttgaat gaaaataaca tagacaacgt tcacatattt      3300
     caattttttc ttatgagcag taatactgct acgtgctagt ctcgaaaggt tctttatata      3360
     acagaaatgg taaatttcag tattttctat aggaagcatt agcagattta cgtgtttctc      3420
     ccgtttataa ttttttgaat acatgcaatg gaacgactgt aaactttttc cctttatagt      3480
     cttcgtcacc tcctatagtt aaccattcct gttcggaaat ttgaatgcca taaacattta      3540
     tagacactgt agcattgttt ttttcgaaag ttgtcacatc cttcaattct gcagggaaag      3600
     atataccctc aaagttcaat gaatctgtat atggaagata attagataag cggcaaacat      3660
     tttcatttgc tgggtacaat gcagcaatta ttgaccactt gaaacagtaa acatcatcat      3720
     catatcctga atcgatatta acaactgcat gtttgtttgc tatcacttta ggtaattttt      3780
     tatgtgctcc cacataaaaa cccttattaa catttacatt aatgcaaagc ttcaaaatct      3840
     ctttgagagc ccaaccagaa tccctagctt gaaaagtttc tagatttctt aatattcgtt      3900
     cagtaatatt agtcgaatac caatcaataa catcatcatc taatgggaat agaggagtgt      3960
     tcttcgtatt aatgtacatc actctttcct tacctgattt gggcagcaca aatttacatg      4020
     ccagagaaac attgattttt aatggctgat tgagctcttg caccttggta acgaataaag      4080
     gccgacatgc tctaacaaac tcattaggat ccttaaaccc aagctcattc actatcatac      4140
     ctgtgcaaat gcgtcctttg aatgcactat ctttacagat ccatttgagt gtatcatcat      4200
     tgattttaat tcgttttgca caagactcat ccattgtaaa catttgtgtt ttcaacagca      4260
     aatctgggtc ctcttatata gcgacggcga tgacgacgca ctgaggaaat gattcacaat      4320
     ttcatggtta tgtagacaag tagaaattgc taattctccg gtggaaagat ttctttcttt      4380
     cgaatatgca gaaagaaata atcgcaacgg aatttcatct ccggtttagg gtttctttca      4440
     gctaatacgt aagaaagaaa gaattaatct ccgcagaaaa catctcttgc gaacgctgtg      4500
     tgcatacagc cggctcccga cagctgatag gatcatgtca cacagaccgc cgccgctttg      4560
     ataaagccac cgcatttcat tgctgcgctt tccagcacga gtgtaattct ccggccgggc      4620
     atttcttgcg aacgctgaga gaaaatattt tttgctgaca gaattaaaaa tggatttcca      4680
     gatagaaatt acagtttgag agaaatgatt ttttactgat ggaattaaaa atgaaccggt      4740
     ggtcttacat aacttgcacg cagtaatgtt ttcaacagca aaacgatttt gtcacatttc      4800
     gacgttttct gtttgctgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg      4860
     tgtgtgcaga attaaaatcc gaattcaatt gcggagcata tagaaatctt ttacatcacc      4920
     tcccccacca ccgtcatccc agccatatat atataaaacg gaggcggtcg gcccatcgcc      4980
     agtggtcgag tatacgtgcg tagtctgcaa gtttttaaaa atcgcatctt atgccttcac      5040
     catgaacttc aatcacaaat tgtgagtact gtcaaatcca agctcactaa tgcactattt      5100
     ctctttt                                                                5107
//
ID   Polinton-3_NVi repbase;    DNA;    INV; 12588 BP.
XX
AC   .
XX
DT   14-APR-2009 (Rel. 14.04, Created)
DT   14-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-12588
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 793-793 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(4443..3613,3664..3245)
FT                 /product="Polinton-3_NVi_1p"
FT                 /translation="MITHNGSGLVNKLINKLPIELHLPGYQYCGPGTKLSK
FT                 RLARGDLGINPLDAACKEHDIAYSENPNNIQARNVADRVLAEKAWQRVTSS
FT                 DANLREKAAGFAVSNIMKVKSKLGMGLSGKRRKMQKKRKLLALKNVIKSTA
FT                 KSFIPSNDSHSSIKSALMVARKHIKNVGGKTNIKIPRVLPVPKVGGFLPAL
FT                 IPIFAGLSAVGSLAGGAAGITQAINRANAAKQQIEEQKRHNKKIEMLALGK
FT                 GLYLKPHKTGYGICLKQRKRKRMQQKRSQRKKTSLTAETYATKTFAKKKNV
FT                 VDVIRLPHRPLTDYDLLKYARLLKIPNFRGVFMRNDLPANKSHYRETAIIN
FT                 LDDKKGAGTHWVAYRKNGNNVFYFDSFGDLQPPEDLMKYLKIDKVKYNYKR
FT                 YQEFDTFVLWSPLPKIFMQSTR*"
FT   CDS           join(10800..10399,10456..8579,8661..7915)
FT                 /product="Polinton-3_NVi_3p"
FT                 /translation="MLKILIINVPSKKHPNRVTNYFPYEDELNMSGIEFPV
FT                 SLKKIPKFEKQNNGISVNVFGLDEKSIVPLYLTSEKKENHVNLLLLTEVET
FT                 DSLEENISHFVYIKNLSRLVSDNLARRKKKRFICDRCLNFSLVKKIKEEEV
FT                 YMRPMLKFFFSEKNLAMHEEHCKLLNDCKVKLPTEGRDYVEFKNYGFKEKV
FT                 PFTIYADCECLLKPLESKDGSESNTTPMQKHEIYSIGYYFKCAYNDTLSVY
FT                 RSYRGVEAARWFSEELRIIEMSVTDLYKNVIPMTPLTSDEIISYNTATVCH
FT                 ICEKPFLDGNVKVQDHCHLSGKYRGAAHAGCNLNYQDSRIIPVIFHNLSGY
FT                 DAHFIISDVSNHFPGQVYLLPITKEKYISFTKSVENSDIKFKFIDSFRFMP
FT                 SSLEKLSSYLEEYKIVDREFSSLEKEKINLLTRKGVLPYEYITSWDKLDET
FT                 TLPDLDKFFSTLNDSGISMEDYEHAQNVWHSFNIQTLGEYSDLYMKTDILL
FT                 LADVFENFREHSIKAYGLDPAHSTPGFSWDAMLKHSGIRLKLLTDIDMVLF
FT                 IERGIRGGLSQCSHRYATANNKYMLQDYKTEEETSFLIYLDANNLYGYGES
FT                 QYLPYDDFEWITDCENFDFFSVADNAPNGYILEVDLEYPYELHDEHNDLPF
FT                 YPEHLTPPGSKQNKLLATLQHKKNYVIDYRALKQVIAHGLRLRKIHRVLKF
FT                 KQSPWLKSYIDLNSSMRAQPKNEFEKYLFKLMKEKSERKASNKMGWKIWSP
FT                 GIYIIPKFSKKRVNVKLLTKWDGRYGAQAYISYPNFHSSSIFNENLVAIQL
FT                 RKTKVIINKPIYVGLVVLDLSKRLMYDFHYNYMRKMYKDNCKLLYTDTDSF
FT                 IYAIKCDDFYEDMKSNIHRFDTSDYPADNIFNMPRVNKKIVGLMKDECNGK
FT                 ILTEFVGLRSKMYATRINGQDCVKKIKGIKGSVVKKSIKFDDYVDCLRNTC
FT                 IKHRKQHVIRSRLHNVETIRQNKIALSPYDDKRRIQDDNIQTLAWGHYTMK
FT                 GT*"
FT   CDS           join(4539..5234,5244..5660,5611..6228,6219..6638,
FT                 6642..7565)
FT                 /product="Polinton-3_NVi_2p"
FT                 /translation="MDLQEQSLKLPVINFDTLTESNPKRYKRHGNLLPDSI
FT                 RAVFCGPSNCGKTNALLSLIIHPNGLKFENIYVYSKSLNQSKYKFLEKLIE
FT                 PLEGIQYLPFGEHDLVVSPDEARANSIFVFDDIACEKQDNVKAFYCMGRHK
FT                 NVDCFYLCQSYAQVPKHLVRDNVNLIILFRQDDMNLKHVYNDHVNTDMSYQ
FT                 RFKDLCSSCWNSNHGFLVIDKDSKINDGRYRKGFDKFIINMEYSTVRLESD
FT                 KMADFNQQIAVLREVEKARNAIKRKHTLLKSQKIDFEKAVNDSVKPIVDPL
FT                 EKLIHVTETTNHMKEKSEPKVETGRKKKLKIEKVEKKDDIAEDSEGDIEVD
FT                 TEDDIKFESALSESEEEDLEETIKNKKKVSLKKKILKRLLKIKKNEIEDEY
FT                 IDLLLNGQMQTLDTVYGVRRMRNDKLKVGDSFIDFDDNFITIGRKKYKKRP
FT                 GLIQLLFMKNPDQSLITAEDMKDYDEILNDTNAHRKYYLPHEAIRVQDSKK
FT                 YTHYISKSMKEVKLKKGKGLSSISYKVARKNAYMDYIYWDDPNELVDRLRL
FT                 LTAETAAGNQSHINEIQSIIEELREAEYIYIYLLICRVELSLSIKMSIDVF
FT                 GRQLIRTDTVRGPPGQGFKLTADGQFDLENHKLCNVADATEANDVITLKVM
FT                 KENVKLESEKIIHDFNQILNDKKLDTIGNDVSEIKKSIIELYDKIKVIEFF
FT                 INENSSTTTTTTRAHFMIKMKESLVEEIHKPARRNYPRRSFKIRDIDETWQ
FT                 ADLVEMLPYANENKGFKYMLTVIDIFSKFAWTVPIKQKSGKYVTKAMKSIL
FT                 VKNRVPRNLQTDRGKEFYNKEFQQLMKNFKINLYSTYSNMKASICERFNRT
FT                 LKSKMWKRFSLRGNYKWIDILQDITLQYNKSKHRTIGMKPIDVNSTHVKEI
FT                 LTRLAAQKKLRQHKEAKFKVNDKVRVSKSKQLFEKGYTPNWSTEIFTVYKV
FT                 SNTVPRTYHLKDYQDKPIAGGFYEEELLKTRYPDIYLVEKVLKKRGNKLYV
FT                 KWLGFDNSHNSWINKNDV*"
XX
SQ   Sequence 12588 BP; 4059 A; 2153 C; 2182 G; 4194 T; 0 other;
     agtagtatgg gctgcgcggc tacggcgcca ccgaataccg acagtcggta gccggcaaat        60
     ctactttacc gacaggtaaa tctgtcatac cgacgcgggc agcctgcatt tgaatttctt       120
     gccgatttac gacgccagct tgcattcgat gttggtaaga tatatttttg aaacatctga       180
     tgacgtggta cggatgtgat ggcaatcccc ctcccgtgtt aaatatagct cttcaccaca       240
     ttatacagtg tgccgagctc tccgcattgt atctatactc tcttctcccc gcagtccgat       300
     gcgggctgca acgatctgcc ttaccgacgg gtgaatctgt cataccgacg tccgacgcgg       360
     gcagccggaa tttaaattcg atgcatgtat ggaatttaaa aattcgttct tatctgtttt       420
     accgacgtcc cacgcggcag cctgcattcg aatttcttac cgatttaatc ctagtattat       480
     aatttattac tttatgaatc atttattatt tgttaaagta tacgtataga aagagtttaa       540
     ataaatacat tatgaatttt ttctttcttt ttctatatca atgtagaatt aagacttatc       600
     caacttataa gaattcggaa gagatgacag aaaggaataa taaataaatg tatgcaaaat       660
     ataagattac tttttgttta ttaaaaaatt ataacttaat acaaacatta ttcttaacaa       720
     tatgtatgat attatctcag aacttcttgt aaccttgctg ttctggcatg gaattcatgt       780
     tgctggaata cttgctgaaa taatttttcc attctttgct tttatcagca ggcttagagc       840
     aaggctcacc tcgatatgta ttacattgtt tgccatcttg tacttttcta gcgttcttat       900
     cttcaaccag aggtgtatat gaaactttat ttcgactcat tttggagaaa gtcgtaacca       960
     cactaagatc ttatggttat ttgtacagct ttatatagag aaaaaggtgg tggtggagga      1020
     aaatttttta aattaaataa tttttttaac atctccactt ataggattat acttgacaat      1080
     gcgatcatgt ataattaaac aatatgctgt tgtatcagcg ggtatatttt cttttgtttc      1140
     aaactcgaga cgtacatcca cagctgcttg tttcaatgat tcattctgct tggaacagtc      1200
     aataactata agcggtgcat atgtgatgaa ttcttccttg cttaaaagag gattcatatt      1260
     ttcatgataa taagcacttt gaaattgtgc atacatatca tacaacattg caaattgatt      1320
     attatcaata tcaagattaa gattattgta tggataattc tgcgagttaa gaaaaagttt      1380
     tacattgcta atcttacaat gatcaaaatg gctacaattt ttactattat gtccttttct      1440
     agcagtttga aatgctagga taataaagcg tggtttttcc aactggtttg atgttttgac      1500
     ggtccataca tgctgagtag tacgtggaag tactggatat tcatacaatt cccaagaccg      1560
     aaaactcata gcaatgggta tatctttttg aatgtagtta taaagttgta ttttcctttt      1620
     gtctgataaa actacataag gcataagcca ctctatacga gatatggtta atttaaaatc      1680
     atcatacgta gctctatttt caaccattat tgcctcctgc attcatatca ctccttgatc      1740
     ttgtgagaat aagttcatgt ttagcattta caataatttt tcgatagtct tcagcaaaac      1800
     cgaaaatcat tgatagaggt atagtgatgt caaaatttcc attgttatca gttattaccc      1860
     ctcttctgaa acattagtcc atccagaatt ctcattatat ttattctgac ttggtgcgaa      1920
     ggaaacataa cctttcattg tactagttag gccgacattt ttacatcgat caatttcaat      1980
     cgcattcatt tcatatcgca tttcctcgaa cagatgacat atagcattgt tcacaaactt      2040
     ggtatgttgc agcgcagtac catctggttt tgttaattta ccacaaatat gaagtaaact      2100
     tttggaaggt agcaaacaaa tcttgatgtt gaatagaaat acgaatttca tcactattat      2160
     tgaacgatgc tgatgtatag ggttgatgtg catgaatctc ataatgagct acagactcat      2220
     aaaaaatgat tggtgattgt atatcaaggc ccccctccct ccattttttt caggtataca      2280
     gcagcaaaca aaaacacaat ttattttttg ctccttttta cttttctgaa accgtttcct      2340
     ctttttacct tgagacctag actccgtaga aactgaatgt tctgacgtgt taactgtttg      2400
     acgattcgtt gtcgactgac tttctgacga catactggat tattaatata atttttttag      2460
     gcttggtatt gaaaacgatt cccattatta aacattcttc aaatgtagac gaattgttat      2520
     aacttctcca cgtagattta ccaaatcacc atcttgatct acgatccgca attgtaagtg      2580
     atcaataatt ttaactgtta tcggtaaata tataatttgt tttggaactt caattatttt      2640
     gtaacctggt ggaactgcag ggaaaaactc gtgaatggta tgaacttgat tttgattaat      2700
     gtatgctcca gatgtgatat tacactctac tcgtagggca tttactttta gaatggctac      2760
     aggcaagtca gagttgtgag ttatataggg tttcaacagt cgtggagtga aacctagaag      2820
     tcgagctatc gagtctttgg ggcgaaagtc tacttcatgg ctacatgtaa tgacacttct      2880
     cagtgtatta ttattaggtt taataattag cgtgatattt tttaggctga gaatttcctg      2940
     cagagtacgt tcaatatctt ctatttcata gctaccagtt ggtaattcaa tgatttcttg      3000
     tccaacataa aatttattgc ttttgaagtc cacattaggt atggagttga aagttagtaa      3060
     ttcaaccaat ccgagaacgt acattttatc tgaatcgagt tcaattggtg gaaagtattg      3120
     agtttccaga acagacgaag tgcctgacag gctcaaagtt agcgattcaa tcattttgaa      3180
     tgtaagtaag atactgatag tttatcgatc taatcacttc ttatatagac gaaaattgtc      3240
     tgtgtcaccg agttgattgc ataaaaattt taggcagagg tgaccacaaa acaaaagtat      3300
     caaattcttg atatctttta taattatatt taactttatc aattttcaag tatttcataa      3360
     gatcttcagg tggttgtaag tcaccaaaac tgtcgaagta gaaaacatta ttgccatttt      3420
     tacgataagc tacccagtga gtaccagctc cttttttatc atccagattt ataattgcag      3480
     tttctcgata atgactttta tttgcaggta aatcatttct catgaagact cctcgaaaat      3540
     ttggaatttt caataagcgc gcgtatttca gtaaatcata gtcagtcaat ggacgatgtg      3600
     gtaaacgtat tacgtcaacg acgttttttt tctttgcgaa cgtttttgtt gcatacgttt      3660
     ccgcttacgt tgtttcaaac aaatgccata acctgtttta tgaggtttta agtaaagtcc      3720
     ctttccgagt gctaacattt ctattttttt attatgtcgt ttttgttctt caatttgctg      3780
     cttagcagca tttgccctat taatagcttg agtgatacct gcagctcctc cagcaagtga      3840
     gcctacagca ctcaagccag caaaaatagg aattagagct ggaagaaaac cacctacctt      3900
     aggcacaggt agtacacgtg gaatcttgat atttgttttt ccacctacat tttttatatg      3960
     cttacgagct accattaaag ctgatttgat tgaactatgt gaatcattgc taggaatgaa      4020
     tgattttgcc gtagacttga tcacattttt caatgctaac aattttcttt tcttttgcat      4080
     ctttcttctc tttccactga gtcccatacc taactttgat tttactttca tgatgtttga      4140
     aacagcaaaa ccagctgctt tttcacgtaa attagcgtca ctggaggtca ctcgttgcca      4200
     cgctttttcc gctaaaactc tatcagcaac gtttcttgcc tgaatattgt taggattctc      4260
     tgagtaagct atatcatgtt ctttacatgc agcgtctaga ggatttattc caagatctcc      4320
     acgtgctaac ctcttagaca gtttcgtgcc tggaccacag tactgataac caggcaaatg      4380
     taattctata ggtagcttat ttattaactt atttacaaga cccgatccgt tatgggtgat      4440
     catcactctc ggaaagtttt ctgtaaactg acgtaataac tataaatgca tgcttttata      4500
     cttatatcca gtcagttgga attgatcttt aaaagaagat ggatctgcaa gaacaatcac      4560
     taaaattacc ggtaatcaat tttgatacac tcactgaatc aaatcctaaa cgttataaac      4620
     gacatggaaa cttacttccg gatagcattc gagctgtttt ttgcggacca tctaattgtg      4680
     gaaaaacaaa tgctttatta tctctcataa tacacccgaa tggtctcaaa tttgaaaata      4740
     tatacgtata ttcaaagtct ctaaatcagt caaaatataa atttctcgaa aagcttattg      4800
     aaccactaga aggtatacaa tacttacctt ttggcgagca cgaccttgtt gtatcacctg      4860
     atgaagctcg agctaattct atatttgtct ttgacgatat tgcatgtgaa aaacaagata      4920
     atgtcaaagc gttctactgc atgggcagac ataaaaatgt tgactgtttc tacttatgtc      4980
     aatcgtatgc acaagtacca aaacatttag ttcgtgataa cgttaattta ataatacttt      5040
     ttcgacaaga tgatatgaat ttgaaacatg tatataatga tcatgtgaat acagacatgt      5100
     catatcaaag atttaaagat ttatgttcat catgttggaa tagcaatcac ggctttcttg      5160
     taattgacaa agattcaaaa attaatgatg gccgttacag aaaaggtttc gataaattta      5220
     taataaatat ggaataagtt tagtattcga ctgtgagact tgaaagtgac aagatggctg      5280
     attttaatca acagattgct gtgctgcgag aagtagagaa ggctcgtaat gctataaaac      5340
     gaaaacatac tttattgaaa agtcagaaaa tagattttga gaaagcagta aatgattctg      5400
     ttaagcctat tgttgatcca ctggaaaagt tgatacatgt gactgagaca actaatcaca      5460
     tgaaagagaa aagtgaacct aaagtagaaa ctgggagaaa gaaaaaatta aaaatagaaa      5520
     aagtggagaa aaaagatgat attgcagaag atagtgaagg tgatattgaa gttgatactg      5580
     aagatgatat taagtttgag tcagctttaa gtgagtctga agaagaagat cttgaagaga      5640
     ctattaaaaa taaaaaaaaa tgagatagaa gacgagtaca tagacttatt gttaaatggt      5700
     caaatgcaaa ctttagatac agtatatggt gtacgaagaa tgcgtaacga taaactcaaa      5760
     gtcggtgata gtttcataga ttttgatgat aatttcatta caattggtcg aaaaaagtat      5820
     aaaaagaggc ctggtctgat tcaattgttg ttcatgaaaa atcctgatca aagtttaatt      5880
     acggctgagg atatgaaaga ttatgatgaa attttaaatg ataccaacgc acatagaaaa      5940
     tattatcttc cacatgaagc tatccgtgtg caagacagta aaaagtatac tcattacata      6000
     agcaagtcta tgaaggaagt caagcttaaa aaaggtaaag gcttatcatc catatcgtat      6060
     aaagttgctc gtaaaaacgc atatatggac tacatttatt gggatgatcc aaacgagctt      6120
     gttgatcgtt taagattgct tactgctgaa acagcagctg gaaatcagag tcatataaat      6180
     gaaatacaat ccattatcga agaactccgt gaagctgaat atatttatta atatgtagag      6240
     tagagctatc gctcagtatc aaaatgagta tcgatgtatt cggacgacaa ctgatccgta      6300
     ctgacacagt tcgcggtcca ccaggtcagg gtttcaagct tactgcagac ggacaatttg      6360
     atttggaaaa tcataaattg tgtaacgtag ctgatgctac ggaagcaaac gatgtgataa      6420
     cgttaaaagt catgaaagaa aatgttaaac tggaatctga aaaaattatt catgatttta      6480
     atcaaatttt aaacgataaa aagttagata caattgggaa tgatgtatct gaaataaaaa      6540
     aatcaatcat cgagttatat gataaaataa aagtgattga attttttatc aatgaaaact      6600
     catctactac taccactact actcgtgcac attttatgta aataaaaatg aaagaatcgt      6660
     tagtggaaga aatccataag cctgcaaggc gtaactatcc tcgtcgctca tttaaaataa      6720
     gagatattga tgaaacatgg caagcagatc tcgttgaaat gttaccgtac gcaaatgaaa      6780
     ataaaggctt caagtatatg ctcactgtta tagatatttt ttccaaattt gcatggactg      6840
     tgccaataaa gcaaaaaagt ggaaaatatg taactaaagc tatgaagtcg attctagtaa      6900
     aaaatagagt accacgaaat ttgcagacag atcgtggtaa agaattttac aacaaggaat      6960
     ttcaacaatt aatgaaaaat tttaaaataa acttgtattc gacttatagc aatatgaaag      7020
     cttcgatatg tgaacgcttt aatcgtaccc ttaaaagtaa aatgtggaag cgttttagtt      7080
     tgcgtggtaa ttataagtgg atagatatac tgcaagatat aaccttgcag tacaataaat      7140
     ctaagcatcg gacaattggt atgaaaccta tagatgtaaa ttccacacat gttaaagaaa      7200
     ttcttactcg attagctgct caaaaaaaat tacgtcaaca taaggaagct aaattcaaag      7260
     taaatgataa agttcgagtt agtaaaagta agcaactgtt tgaaaaagga tatacaccta      7320
     actggtcaac tgaaatcttt actgtatata aagtatcaaa tactgttcca cggacttacc      7380
     atttgaagga ttatcaagat aaaccaatag caggtggatt ttatgaagaa gaacttctca      7440
     agactagata tccagatatt tatttagttg aaaaagtttt aaagaaacgt ggaaataagt      7500
     tatatgttaa atggcttggt tttgataact ctcataatag ttggataaac aaaaatgacg      7560
     tgtaactatg gatataagta aaataaaaaa attaataaaa attttcttgc ttatttattt      7620
     atttttatac caatttcttt acattttctt aagagtactg gaataagaat tgtatgtgtt      7680
     ttctcaatcc tcattttgaa acgttctcga tcacaggcag cttgctccca ctctccacaa      7740
     cgagccttat gataggcaaa tttccatgca tacattggat gaactgtgac atcgtccgaa      7800
     aaatgtacgc gttttttctc ctctttgctt ctcacgcttc tgaaattaaa tgttatgcat      7860
     gtttaaaaaa ctagaaaata aaaataatta aactgatctg ataaataatc atacttacgt      7920
     acctttcatc gtataatgac cccatgctaa agtctgtata ttatcgtctt gaatgcgtct      7980
     tttatcgtcg tatggactta gagcgatttt gttctgtctt atggtttcca cattatgcag      8040
     tcgtgaacgt ataacgtgct gttttcgatg tttgatgcat gtgtttcgaa gacaatctac      8100
     ataatcgtca aatttaatgc tcttttttac aacggaaccc ttgattccct tgattttttt      8160
     cacacaatct tgaccattga tccgagtggc atacatttta cttctcaagc cgacaaactc      8220
     agtaaggatc ttgccattgc actcgtcctt cataagacca acaatttttt tattgacacg      8280
     aggcatgtta aatatattgt cagctggata atctgatgta tcaaacctat gtatgtttga      8340
     tttcatgtct tcgtaaaaat catcgcactt tatagcgtat ataaaactgt cggtgtcagt      8400
     gtacagaagt ttacaattgt ctttatacat ttttcgcata taattgtaat gaaaatcgta      8460
     catgagtctc ttagaaagat ctaagactac aagtcccacg taaataggtt tattaattat      8520
     aactttagtc ttgcgaagct gaatagcaac caaattttca ttaaaaatag aactgctatg      8580
     aaaatttggg tatgatatat atgcctgggc tccatatctt ccatcccatt ttgttagaag      8640
     ctttacgttc actcttttct ttcattaatt tgaacaaata tttttcaaat tcatttttag      8700
     gttgtgctct catcgagcta ttcaggtcta tgtaagactt taaccatgga gattgcttga      8760
     attttaaaac tcgatgtatt tttctcagac gaaggccatg agcaatgact tgtttcaaag      8820
     ctctataatc aatgacataa tttttcttat gctgaagtgt agccaatagt ttgttttgct      8880
     tagatccagg aggtgttaga tgctctgggt agaagggtaa atcattgtgc tcatcgtgca      8940
     attcataagg atactctaaa tccacttcta aaatataacc gtttggagca ttatctgcta      9000
     ctgagaaaaa atcgaaattc tcgcaatcag ttatccactc aaagtcatcg tatggaagat      9060
     actgcgattc tccataaccg taaaggttgt tggcatctaa gtaaattaaa aaactggttt      9120
     cttcttcagt cttataatcc tgcagcatgt atttattgtt agcagtcgca tatcgatgtg      9180
     agcattgact taaacctcct cgaatacctc gctctatgaa taaaaccatg tcaatgtctg      9240
     tcaatagttt taatctaata cctgaatgtt taagcatagc atcccaagaa aatcctggtg      9300
     tagaatgtgc aggatctaag ccatatgcct ttatactatg ttctcgaaaa ttttcaaaaa      9360
     catctgcgag taataatata tcagttttca tgtataaatc agaatattcg cccaatgtct      9420
     gtatgttaaa cgaatgccat acattttgcg catgttcata gtcttccatg cttattccag      9480
     aatcattgag tgtactgaaa aatttgtcta gatcaggtaa agtcgtttca tccaatttat      9540
     cccacgaagt aatgtactca tatgggagta caccttttct cgtcagcaga ttaatttttt      9600
     ctttttctaa gcttgaaaat tctctatcaa cgatcttata ttcttcaaga tatgaggata      9660
     atttttcgag cgatgaaggc atgaaacgaa aagaatcaat gaatttgaat ttaatatcac      9720
     tattctccac actcttcgtg aacgaaatat acttctcttt tgttatagga agtaaataga      9780
     cctgcccagg aaaatgattt gatacgtctg agattataaa atgagcatca taaccactta      9840
     agttgtgaaa tattacaggt ataattctag aatcttgata attgagattg caaccagcat      9900
     gtgcagctcc acgatatttt cctgaaaggt gacaatgatc ttgaactttt acattaccgt      9960
     ccaaaaatgg tttttcacaa atatgacaga cagtagcagt attataactg attatttcgt     10020
     ccgacgtgag tggagtcata ggtatcacat ttttatataa atcggtgaca ctcatttcaa     10080
     taattcgcag ctcttcagaa aaccagcgag cggcttcaac acccctgtaa gatctgtata     10140
     cagatagagt atcattgtaa gcacacttaa aataatagcc aatgctataa atttcatgct     10200
     tttgcatagg cgttgtattg ctctcactgc cgtctttact ttcaagtggt tttaatagac     10260
     attcacaatc agcataaatt gtaaatggca ctttttcttt aaaaccatag tttttaaact     10320
     ctacgtagtc tctgccctct gtagggagtt taactttaca atcgtttagg agtttacagt     10380
     gttcttcatg cattgctaaa tttttttcac taaagaaaaa tttaagcatc ggtcgcatat     10440
     aaacctcttc ttctttctac gtgcaagatt atcacttact aagcgtgata gattttttat     10500
     atacacaaag tgagatatgt tctcttccaa agagtcagtc tccacttcag tgagtaaaag     10560
     aagatttacg tggttttctt ttttctctga tgtcagatag agaggtacaa tactcttctc     10620
     atcaagtcca aaaacattta ctgaaattcc attgttttgc ttctcaaact ttggaatttt     10680
     tttcagtgaa actggaaatt caattccact catattaagt tcatcctcgt atggaaaata     10740
     atttgttact cgatttggat gtttttttga tggaacattg attatcagaa tttttaacat     10800
     ttatgcatgc ttctttttta actaaaaatt ctggcagagg tatatacgag ctaccagtac     10860
     gtattggatt aaatacattc atattaattt gtatattgac aattgaatgt aagtccaacc     10920
     agaatcttgc tcttcaaact cctctatttt agtgagaaga ggttccatga tgtgatcaat     10980
     aaaccactgt ttaactatag atgctgcaaa aatttctgta ttttttgtat tgaaatgctt     11040
     tgtttcaata cattctccct cttcatcacc atccacattt ttcacaattt ttttaaattt     11100
     acatgataag actgaattaa ttttctatct caatatgctg aatattagct actatactgg     11160
     tacgcatcct attattaaat gcactatcta catcaatcca tcttacacgg gcatttatct     11220
     tattttgcac aagcccacca ccggattttg tcaatctctc atgtaatttt atgtaaaaac     11280
     attcaatttt accaatcata tacatattga tcgtttttag agacagagaa gagtttgtct     11340
     tttaaggcaa tacgtaattg tttaagacat aaatcacatt gacttttcca acgatttatc     11400
     acaatcgtat cagtagtagg tctggataat aaaagctcct cagcttcctc cagatgatgc     11460
     actaatgatc gacaattatc caaaagagta gccatgtcac ttgcttgttg acaactaaaa     11520
     aattaagcat gctgctaaaa atatataacc aggggagatc aaagcattta taaatattaa     11580
     agaaggggta aaatcataga gattttttga taaatcaact tagtatgaat ttaaataaaa     11640
     tttgtctata tcaattaatg tttttgtatt tgttttttat atttgaattt ttgcattagc     11700
     attttatagt gtgtgattta atgtactgat atgtgaatta ttatcgttaa gatatatatc     11760
     gtgttactgt aagatacaaa tctcgacacg gcggtgccat gtacagtttt tatatcgtat     11820
     aaataggctt tcttaaactt attcgataca gcgaaaatct agaaatatat tgtcataaga     11880
     atagcataaa acgtttgcaa tataatgttg gtttgagtgg cgactcccct ccatacgctc     11940
     cgcacatcat acatttgaat ttgcaggtca aacatagcgc gcgcctgacc aagagtagaa     12000
     gtatatgtat ggctatactc ggcacgcata gaactcggca ctatgtgcgc gctgtggcga     12060
     tgagagtata tctatatcta tactcagcgc gcagtatagc ccgcgacgga ctgctgcggc     12120
     gagaagagag tataggtata cacggagagc tcgacactgt atgcgtacag cgtgcgctgt     12180
     atagtaaaga gagtatatct atatcgatac tcagtgcgta catcggactg aaagctcgac     12240
     tgccagcatg cgctgttggt atgagagaat atctatatct aactcagcgc gttgcagcgc     12300
     gtatcggact gtgggaagaa gagagtatag atacgatgcg gagagctcgg caaactgtat     12360
     aatgtggtga aaagctgtct ttagcacggg aggaggattg ccatcacata tgcaccgcgt     12420
     catcagatgt tttaaaaata tatcttacca acatcgaatg caagctggcg tagtaaatcg     12480
     tcaagaaatt caaaggcagg ctgcccgcgt cggtatgaca gatttacctg tcggtaaagt     12540
     agatttgccg gcattcggtg gcgccgtagc cgcgcagccc ctactact                  12588
//
ID   Polinton-3_PBa repbase;    DNA;    INV; 18021 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-18021
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 644-644 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 18021 BP; 5512 A; 3645 C; 4127 G; 4717 T; 20 other;
     agtagtaagt ggggcactat ggcgcgtcaa aacaaacccc caccaccttc ccactggcgc        60
     caggggcgtg gcccccgacg gtcaaaaact ggcagccacg tggaaatgga gcgttctgat       120
     tggtcggtgg ggatsggaga tgataattag gtaattagtg ggagcgttct gattggttgg       180
     ctccgtagct gccmgacgcg tgattggctc tacccatagt gccccatgtg tgcgattggt       240
     tgtcgaaatg ctagacgagg taggggaagg gtgagaaagc gtctgggacc gatcggagtc       300
     cgaaaacaaa atggcgactg cgaaaagaaa tatggcgggt ctgtaagagg aatatacttg       360
     tcgagaatgg aatgcgattt tttgttcacg tgggatggag cgaagagaag aaaaccgatt       420
     ttttgtggaa ttttactggt tgtatacggg atatgaagaa tcacgttttt cttagggcga       480
     aaggtttctc ggcgtctcat agtcggtgaa tttagataaa tttctcgact cgtttgacat       540
     tttttgtatg ggggaaatat aggttacgag tggatatagg ttttgaagac atgcgatttt       600
     cggtgtgtaa taaccattat ttaccagctc gtacggtatt tggctggagg aaaacgggaa       660
     cggacaggtt cacactaaag gtttctgatg acgacgacga cgacgaactc ggagttatac       720
     gaggatttta tcctatccac aaacacgcgg gctgaaaaaa ttttctttcg acgtgacgat       780
     aactatgcag gcatactgaa gggagagaga gagagagaga gagagagaga gagagagaga       840
     gagagaaacg tgtgggtcag gaaagcatag aggtactaga agacaataga aaaacacgct       900
     cgcgcaggcc cgcgtaaatg actttcaaaa aggaagagtt gtgaaaaatt taggataaag       960
     ggagagataa agaaacgacg taaatttgaa tttatgttac caagtataag tcgaatttat      1020
     ttttcgcata tatgaatatg ttttgttaca gagttattct tcttgttaca aaattaaata      1080
     tacgaatatt atacaaaaat tataactcac gattcaataa aattatagta gtaatttctt      1140
     taaattttaa tgtaattaat tctaaaaata caatatcaaa atatgtatcc aaaaatggta      1200
     aattatttat ttgcgttctc acagcaagtt cgatatcctt ttggttgcct cggacagtga      1260
     gtttgatgat atcggcgtcg atgtaattgt taggtagaca tagttctatc tccttgatca      1320
     aataacgtgc gcactcgtta acagtatcga cgacggatgc tagctggttt atacgagcat      1380
     cgacacattt gacgatattc tccatccctt gaaaagtagc ttgttgcatt acaactgcga      1440
     cggaataagt tttccttttt ttcgacggag gttgttcctc cgttttcgag tctgcttgcg      1500
     tatttccggt actgttttct ttaggaaaat tttcattttc cttatacgtc accaatacag      1560
     ctttcgcacc gtaggcagag gtgaagttga tgaatatgtt tgcaaatgtg atgggattta      1620
     ctttgctttt gctgcttccg ttaaagtatg cgctcatgta ccgaatactg tcttgaaatt      1680
     gctgccacgt gtccggatca aagctgattc cttctgcaga attaccactc aatttaacga      1740
     caggctcgaa gatcttttcc ttagataatt gtaatcccac gtgtaatttc ttcgtatgag      1800
     aggtattgag agggtacgtc gtagaaagca gcaaattttg ttccacattt tgcacagagt      1860
     tcttgaatat cttgcgaata ttttctagtt tagcgggatt cgcagcttct tgttgtccgg      1920
     ccatattact cgatgagaga attttgaaca aaatgtccac ttttaacaaa cgaaaactcg      1980
     gagggatatt ttcgaagtag acgcttcgaa tgtcgatact cgagtgaagc agtgtagcgg      2040
     tacaacatta cctacctata tcgcatcttc ccctcctttg aaataaacaa aaaagtacgt      2100
     tttataaata atatacagtt aaaccgattc tagaagattc tagaagaaac gcgtattttc      2160
     gctttgtctc tgcttttttt caaggaaaaa ctttcctcga ataacagaat tattacagat      2220
     tcgatcatgt tcgaacacgc gcgaatcttc gatgttagat gagaaaaatt ttaaataaat      2280
     aaattattga acattcgagt aaactataat tttacgttgc tctttttcaa caaggaaaga      2340
     attttctcga ataaagcgaa tattacaggt tcgatcacgt tcgaacgtgt cagggtatta      2400
     gatgagaaaa tttaaaaatc atcgtaaaat catcgtaaat catcgtaaaa tgcagaaact      2460
     atttcaagaa gaagaagaaa gtatcgaaat atacaataga agtacgagta agaaatattt      2520
     tataaatgtt taaaatttgt taatgtttaa tttgttaaat gtttaaaaat ttgaagaagc      2580
     gagaactttc cttccgaaaa atttaaataa ctatttattt ggacgtgcta tatatctggc      2640
     gccgtttata cgccgttagt aaacaaaaaa aaagtgaaat cgaaaaaggg tcaagctaca      2700
     agtaatataa atttttcaag aaaaaatgat ttattacttg ggctgagata gcattcctac      2760
     ccctcgccct ctcgaaacta caggataatt ctacaatttt ttataaatct cttttggaaa      2820
     agattttccc tatatatagt gcgtcttgcg ctattctaaa actatttccg agttgaactc      2880
     ttccgtgctt catctcggtt tcgtcacgcg ggwtttaaaa gtttgtgttc gggwtatttt      2940
     gcgcgaataa aggtgcgaaa aatgggcagt gwagtkatta aaagaakcat aaagttagca      3000
     tcgatgttgg atatccgcat aaacgcggag aaatttttgt ctaaaatatc caacgtttcg      3060
     ctcgatgcca actatctgct ttttacacgt ttttcgtgcg aatgttctga tacaatattg      3120
     ggggtgctgt atcagctggg atactttggt gccgacgcgc gtttactccg gattgccgga      3180
     gaaataattg aaacgcgacg tgcggttgga cacgaggagg aggatgtggg tggacacatc      3240
     caaaatctcc tctctcatct ccacaatggt aagtgactct ctattatttc tataaaagta      3300
     actcatatat cgaactcgcg gtttagctaa tttttaataa taaattgtag taagaaatgc      3360
     gcgtcaaaga gccacgcggt agtgtatccg ctcacgcaga ttcggaggcg acgcgcggag      3420
     gacgagccag aagcaggacc agcacgtaag taatttcgct aaaaactagc caggaagaat      3480
     gttaaaatgt aatttttaca attttctaag attaaaatat taaatgcttt taggaagggc      3540
     tcgtatttta cctacacagg aattggagga ggaggaggag gaggaagagg cgcctccgga      3600
     aattattcaa ctatcatctg gtaggtttac atttttaaat aaataatctt taaaacaaat      3660
     ggtaaaaggt agaaaatctt aatacaactc tgtttttaga tacggcagta agtactcccg      3720
     atcagcgtgt gttttcacct ggtaagttga tagagaaaaa atattaatta attaaagtac      3780
     ataatatctt tattaatcaa aggacataat attaatatca aaaataaaaa tttacgatat      3840
     attttttctt agaatacgac catatgtact cccccgtaat cccggaggag agaatctgga      3900
     gcgaggaaga aggggaagaa gaagaagtgc aggaagaaga agaagagcag gaagaagaag      3960
     aggaagagga gagggaggag aggaggaaga ggagggggag gaagaggaga tggaggaacg      4020
     cgaggaagaa cccgaagaag gcgaagagga aattagagaa acaccgcctg gtatataatc      4080
     cttttcatct taatttctcg atttatgttc gtatttaatt ttaaattatc gaatttttaa      4140
     taggaatcct cccagtccta ttctctacgt gagaaggagc cgacgataaa aggcgttacc      4200
     tcagaaaaac atgtatgttt atcaaattaa atacgaacat aatattctaa gcaaactcga      4260
     agtattttct ataaaattct aatttttgta acttttgtac agaagcgaac atcgaagagc      4320
     cgcagcgtgg aggaggactt gctgctcagg aaaatttgga ggagggggag gtggaggagg      4380
     agcaggaaac agcaggcgaa gaaagagaag aggaagagga agaggaggag gaggaggcgg      4440
     cggctgagga aggaggacaa gtggaagagg aggaggaaga aggaggacaa gtggaagagg      4500
     aggaaagaga acaagcacgt ggcggggagg ttagaaattt taatcattta atattaatcg      4560
     gggaaaattc gcgccggttt agaaattttg caatattagg aagagaggcg atattccgtt      4620
     tgcgtccgct acccgaagga gtcggtgttt ataactggct tgaaaacgcg ttcgccgaaa      4680
     ttcatgccta cgcgttacat acctccgaac cgcacgatta cgtgggattt tcattcgatt      4740
     cggaggattt aacgcacggc ccggcgggat tatcgtttcg accggcacgc gacttaactc      4800
     gcgaggacat ttggcgcctc gtgagttcag tagcgcaaag cgccggaggt ctcgatatcg      4860
     cgcgggattt taacgtacgc gttttcaatg tcgcggcacc cagaggtcgc ggacgcgttt      4920
     caaataaact cacacgggaa gacgttgcga aacgttcgat tttawcaatc tccaattccg      4980
     ataatttatg ttttccccgc tctctcgtga ccgcgcaaat ttatcacgaa cgcggtacgt      5040
     tgcgtgcggg ggaacttcac gagcggtgga atgtggtaag acatcagaat tcctcgttac      5100
     aacgcgaact cgcgttggat ttgacgagga gagctggtgt caccattcca ccggagggtt      5160
     gcgggattcg ggaaatagaa tgtttccaac gctttctcgc cgcatctgat atagctattg      5220
     ttgtttataa ttctgctact tttggacgcg gcgagagacc cttatttgac ggaagcacgg      5280
     tactcgcctc tctagaacgc gaacctttat atcggctaaa tattatatat cacgagcaac      5340
     atcgacatta tagcccaatt ttaaatttaa aagcagccgc ggggagtaga ggggggtatt      5400
     gtattccatg taatatcggg tatcgtgagg aaaggggtca ccgctgttcg aataaatgtt      5460
     ctcgttgtaa caacgtgccg ccgtgcgatc aacgcgaaat cgtggaactc gttaggtgtg      5520
     agacttgcaa acgttcgttc ttcggaaacg catgcttcga acatcatcgg gcgacaaagt      5580
     cgtatgacgg taaaactccg acgagcgttt gtaacaccat tcgtctctgc gaaggatgcg      5640
     ggcgggttgt aaaaacgaca aaaaaacacg aatgcggcgt ttctttttgt aaaatctgca      5700
     gtttgcaaaa acccgtaaac catctttgtt acatgcagcc tctctctcgc gaagacagat      5760
     cctccgttgt tgagtgcggc ggggattctt ctgtatttgc gagagagagc gagcagaata      5820
     actcgggtga gcgggaatgc aaaaagggac gagtggcatt cgtgttttat gattttgaga      5880
     cacgccaaga ccaatcgctt gagggaaccg aaataaaaat tcacgtcccg actctgtgcg      5940
     tcgcgcaaca gatttgcgat tcgtgcgcgg agatagatga tttgtcggtg cgatgcgagt      6000
     ggtgcggagt acgcgaattt gtttttcgcc aggatccggt aaaacaattt atcgaattcg      6060
     caacacgtcc tacaaaacat tttacacgta ttatttgcat agcgcataac gcgaaatcgt      6120
     tcgacgcgca gtttatcctt cggcacattg tagaaaatta ttccggatta gaacctcgtg      6180
     taattttaaa cggtacaaaa attatggtcc taacagcgaa tcgcacgaaa tttatcgaca      6240
     gtgttaatta tatgccaatg cgtttgtcag aattaccgaa ggccttcggg ttaccggata      6300
     cttgtgacaa aggtgtcttt ccgcacttat ttaatactgt cgataatcaa acatatgtcg      6360
     gtccactacc cgatgttcgt tattacgcgc ccgaaacaat gcgaacagag gaacgcgaac      6420
     gttttctcgc gtggcacgca gaaatgtcgg gaaaaaatgt agtatttgat ttccaacgtg      6480
     aaatactcga gtattgtcgc accgatgttg atatccttcg ccgagcatgc atggccttcc      6540
     gaaaaatatt cttacagcgg ggaaacgtgt gtccattcga ggaatgtaca actatcgctt      6600
     caacgtgcat gagagttttt cggaaaaact ttttgcgcga aggagaaata ggaatcattc      6660
     cttcgggtgg atacaggttt aaagataacc agtcgcgcaa aggcgcgcaa tggttaattt      6720
     tgaaggaacg tgagttaggt catcggataa ttcacgcggg acgcggacgc gagtatcgtt      6780
     tagcggaagg catgctcgtc gacgggtatt acgaatgcga gaatgggggt gagacgcggc      6840
     gtcacgtctt gcaatttcac ggttgctttt ttcacggatg cccgtcttgc tatccattaa      6900
     atcgtgataa aacgctcgaa aattttaacg acacgtttga cgcgcgttac gaacgaacgg      6960
     ttgcaacgtc ttggcgatta cgtcgtcaag gatatatcct aacagaaaaa tgggagtgcg      7020
     ttttcgacga agaaatgcgc gagaatcgag agatgcgaga atttctcgaa aatcacccca      7080
     tggtgcaaat cccacctctc gatcctcgcg atgcattttt cggcggacgc accggcaata      7140
     tcgcgactcg atacgaggtt acgggcaccg agaagatacg gtacgtagac gtatgttctc      7200
     tgtacccgta tgtactcaag accggagttt tcccaattgg tcacccggat atttatgtgg      7260
     gcgaggaatg cgccgattta attggaatcg cgccaaattt taattttact ccggtcgagg      7320
     gtctcgtacg ttgccgagta ctccccccac gtgatctctt ccaccctgta ctaccgtacc      7380
     gcgtgcgcgg taaattatta tttgctcttt gccgtacatg ttgcgaatca ttttctcgcg      7440
     acgcgtgcac tcacgacgat cctgcggagc gtgagttcga gggcacatgg gtgtcctgcg      7500
     aattacgcaa agcagtcgaa aaaggatatc tcgtgacgcg ggtagacgaa atttggcagt      7560
     acaaatctac gcgttataac cccgaaacgc gacagggagg gttgtttacc gaatacatca      7620
     acactttttt acaactgaaa caagaggcga gtgggtggcc gagcgaatgc aacgacgacg      7680
     ttgctaaaga acgctacctg agggagtatg aagcaaccga aggtatcatt ctcgataaaa      7740
     acaacatcgt acgtaattcc ggcttacgct ccgtcgccaa actctgcctt aattcgtttt      7800
     gggggaaatt cggccagcgg agtaacctgc cgaatacaga aataataaga tcccctcagc      7860
     gtttcgccga attgctgtcg agtcctgaac acgagatagt cggtgtattg cccgttaacg      7920
     aggatgcgat atacgtttca tggcggttaa agagcgaagc ggtggtacct tcaccgataa      7980
     ctaacgtggt gatagcggca tacacgacgg cacaggcgcg attaaaatta tacgaatatt      8040
     tggaaaaatt agatcgtcgc gtattatatt acgatacaga ttcatgtata tatacgagca      8100
     gcggtgatcc cgaggagtac gaaccgcgta caggtaattt tttgggtgac atgaccgacg      8160
     aactcgagag ttacgggcgt ggtagcttca tcgaggcgtt tgtctctggc ggaccgaaat      8220
     tttacgcgta cgtggtacgt acaccggacg cacgaaaata tgaaatatgt aagataaagg      8280
     ggattaaatt gaattttgaa aactcgaggc tgcttaattt taagagtatt tataatttat      8340
     tattaaatag ggaaaaagag gaggaggaag agataaatct gcgatttaaa acaattcgcc      8400
     gcaccgcgtt tcacgaagta ataacgcgaa acgaggtgaa aacgtgtgct cctgttttat      8460
     taaaacgcag attcatcgac aatcttcttt cttatcccta cggttttacg atataatatt      8520
     ttacttaaaa ttaagttagg ttaaggctcg gattttcccc gtcctcccgc aaatgtaaat      8580
     atgtacagaa tatgtataca gaataaatat gcttgtaaaa attaagatta tttttatttt      8640
     agttatagtt tattttagta ttaaatttaa gaaaaaatgc gaaatttgaa aaatgtatat      8700
     tatacgagtt tcgattagaa aatgtaaaat tacaaatgta aatttgcgtt tagttattaa      8760
     gaaaaaatgt aataaaaata tttatttctc taatcgtaag aaaaagtata ataaaaattt      8820
     tgtaaaatta aatttttaaa tccaattttt tcccactttc ctataatttt cctataactt      8880
     tcttttatcg ctaatttttt atatagaaaa tattttgaat ttacaataga gaatcattaa      8940
     aatactttgt aaaatatctt ttaaattata atcctaaatt ataatcgcat aagttacgat      9000
     ttttaaattt tgtaaaagaa aaagttataa atttttacgt ccgtaataat aagtattcaa      9060
     ttattttttc cgcgagtaag tttctccggc ttgaattagc tttcgaggag caccgcgtac      9120
     aagctcgtaa gcgacggtgc tctcgcggtg gacgctcgca cgagcgtacg agcgcggctt      9180
     gtcgcggacg agtacgagct cgttacgcaa agatgctggc gcgagcacac ctccgccgcg      9240
     gtggggccct tccgcgagta agctccaatc tcaaaaattt ctctgagaaa aaatcaagaa      9300
     cctcaagtgt tccattcctt tgtttattaa tctaagtacg acgcgcaagg cgttcatttc      9360
     gcgaaatgga tgtacgctgg aaacatccgt ggacgtcgat cgtgtgcgga ccgacgggat      9420
     gtggaaaaac aatctttgta aagagatttc ttcgtcattt atccgctatg gcagatgtct      9480
     actttgagag aattttgttt tattacgccg aatggcagga tgcttatcag caacttcaat      9540
     acgaaactcg agattccgca atcgaatttc acgagggatt accgcgtccg gaagattatt      9600
     ctaacgatcc aacgcgcgcg aaattgataa taattgacga tcttatgagg gaatcatcct      9660
     cgagcgaagc gatcgtggat ctgtttacca agggaagtca tcataagaat ctcagcgtaa      9720
     ttctcatcac gcaaaatctc tttcatcagg gccgtggaca acgcgatata tctctcaacg      9780
     cgaattactt tgtggttttc aaaaatccac gagatcgcgc gcaaatccgc catctcgctc      9840
     gacaagtcta tcccaacgat ccaaagttcc tcgaggaagc gtatcacgac gccacgtctc      9900
     aacctcacgg atatttattg ctcgatctga aacaatcgac tcccgacgag tatcgttttc      9960
     gcacgtgcat atttcccgat gatacgctga actacgttta cgtatcgcgc agatcctttt     10020
     ccggaagttt cgtataaaag tatcgtactc gcattctctc gcgacagtcg cgcaacttcc     10080
     tcgcgatgaa gaagagaaga gmgtcttcgg ttaatgcgag aaaaatcgca gaacgttcga     10140
     tcggtaagaa aaatatctgt cttctcaaag cgctgtgtta tttgaacaaa aatcaacgcg     10200
     cctctttctt acgtcaggcg gatgaaaaat tcattcgttg tatccgcgag tgcgttttca     10260
     atactctcaa gggtaacgtc ccgctcgaac gttctgaaaa aaatcgtctc agcaaatata     10320
     aagcatcttt gcgtcgcata gcgaaaaaag acggtaattg gaaaagtaag aaaaagctat     10380
     tactacagcg aggcggattt ttaccctatc tcatagggcc tatactttcg ttcctatttt     10440
     cgaaaattat cggagaatag tcagagagag agagagagag agagagagag agagagagag     10500
     agagagagag agagagagag agagagagag agagtaaacc taattatgga aagggcaaag     10560
     aagatggtct tgatttccac ggaaaatctc gaaagaatgc agcatcgcct ccaacaacat     10620
     cagcaatcgg taataggcac cagggaaaac tccacgcggc agaattcgga gacgatacat     10680
     ggagaaaatt taaattccgt acaaacaccc ggaacgmctt tgtcacggct cgattccgat     10740
     atgagcagga ttcttaattc acccactccg cgcgatgtaa gtgagaaatg gaaattgtat     10800
     aaagaagtac tttggcgata tctccatttt gataaagcgc aaaaggaaga ttcgacgcgt     10860
     aacgccgccg atgagaacaa ttcagatgcg cgggagggag acatggcgga accggcgcgc     10920
     gaatcacaac atcgagcaaa ctttctcatc ttgacgagca agtaagtaat atactacggg     10980
     ccgagtctct gcgtaagcgc gaacggcaaa gcgtcgaaaa aatattagaa aatgtgccga     11040
     aaagttttcg cgccaaggcg cgtttacttt tgaaacattt gatcgataaa gcagtacccg     11100
     cgagaattac ttgggacgag gaaggaatcg tgactatcga tggtgacgtt ataaaagatt     11160
     cgaatatcac ggaactgata aacgacgcga tgcgcgagag aaaaaccgtg aaagcaatag     11220
     gaagaggtca gtttgcgcga ttactgcgta cgacaaacac cccggctgta ctcgtaggaa     11280
     ataaggaatt gttagcaacc acatttgtca agatattatc atcaccacga gcgagttcca     11340
     ctccgaaaat accgagaaaa ctttcaacgt caacgcgcga cgcgacgcga cgacgaggag     11400
     gagagtacga cgcacgagaa agggacaaaa acgcaagacc gaagaagaag agcgagcgaa     11460
     gtgcgcattg tttctttcgc cgcgttttcg taaagacgat atccctataa ccttcgtgaa     11520
     agattctcga caggcaagaa agagacgctt actcgattgg agtgaattga aatgaccagg     11580
     cttgaaaatt tgtattacga tccagcgcac tatgcggggt attcggcaac ggataacttg     11640
     tcgcgtgccg ctaaaccgaa tttctctcgt aaagaagtag ctcgctggct cgaatcgcaa     11700
     gacgcgtaca cgctgcaccg tccgtcgaga cgaaaatttc cgcgattacg ttacaacgtg     11760
     acgaatatcg acgatctgtg ggaggccgat ttgatcgaac tccgtaatct caaaagttac     11820
     aacgacggat tttcttatct tctcgtgatt atcgacgtac ttagtaaatt tgtctgggta     11880
     gaaccgttgc gggataaaac gagcaattgc gtgacaaggg ccttccaaaa cattctctcg     11940
     agaagcgatg gtcgagtacc cgtgtactta caaaccgaca agggtaaaga atttatcgcg     12000
     cgaccgttgc aagatttttt gaaagaaaga ggcatacgtt atcgagtagc tcgcaatccg     12060
     gacgtcaaag ccgccgtcgt tgaacgcttc aatagaacgt tgaaggagcg aatgtggcgc     12120
     tattttacgc ataaaaatac gcggcgttac atcgaagtgt tgcaagatat cgtgcgcgct     12180
     tacaatcaca ctcgtcattc gtccatcagg atgcaaccgg cggccgttac gagagaaaat     12240
     gctcgcatcg cacgcgaaaa tatggagcgg cgtagagggg gagagagaag ggggcgtcga     12300
     aagtagtaga acaaaaggct aaattcgatg ttaacgatct cgttcgtgtc agtagagcaa     12360
     aagccacttt cgagaaagga tacgaagcgc ggtggagcga ggaaatattt cgagtttgtc     12420
     gcgttctcca ttggcgaaga ccccgcgtgt acgaattgtg tgatttatcg ggtgaacaca     12480
     tcgatgggat tttttatgaa caagaattag cacgggtcaa taaaaatttg gcggaagaag     12540
     agtttatcgt cgagcgcgtg ataaagagca gaggacgcgg tgctaataaa cagctgctag     12600
     ttagctggca aggatatccc agcaaattcg acagttggat ccccgcttcg agtttaactt     12660
     ttctccaaga tggaggagga gcaatttttc atggttcttc cgagcgatag cagtaagaag     12720
     tatttcccgg gaaatacawg ctcttctttc accacacaat tacctcacgg cgtacattta     12780
     ttcggggaat gggaagtcgc gcttagcgag attcaatttc cctccagtct cttccacgta     12840
     cgtcgaagmg ataataagat tagatttgtc gatttgaaga gcgaaaagga tgagaaaaat     12900
     gctgataagt ttacggtgaa agaattgcac ttacaggcag gggtttatga aaatacagag     12960
     gawcttatct acgcgattaa taaagagtgc agacgcaccg attcgcattt tactttcgaa     13020
     ctacaaaaag gctcaggtgg taatgtccgt ataagcatcg attgtgacga caactgtact     13080
     ctcgttcatt atataaatct gccagctaat atttttcaaa tattgaagat caacatcgat     13140
     gataccggca caatttaccg tcacaagtta cctaattcca acgaattaac gccgtttttg     13200
     aaactcggtt atgccatcgg tagtggacgc actgtatctt tctggactgc agaaccctgt     13260
     agcctatggc acggtatccc tgataaaatg tacgtttatt gcgacatttg cgagccttac     13320
     ataaccggcg atacgcggag tccgcttctt cgaatcgttc caatcgawac acccggmtgt     13380
     aattacacgt acgggacgaa tctggtaaaa tatttcccca ctttgcaata tactccattg     13440
     cgtcaaacga aattccgtaa aattgaaata gatataaaag atcaccgtgg agaaaaaata     13500
     ccattcgwat ccggaacgct gatagcgaca ttacacttta gacgtgtccg ttaattacca     13560
     ttcgcggtgg aaagtctacg gagctttgag aaaaaactaa tcaccccatg gaatacgacg     13620
     agtattacga aaggcagaac ggtggaggca ggggaggagg aattccgcga attttcgtcg     13680
     gttcagccta tcaacgtggt cacgggatcg ggagtttcct cggaggatta tttagaaggg     13740
     cacttcctta tctaagcagg ggaatgcgcg cactcgggaa agaagcttta cgcgccggaa     13800
     ttggcgtgat agaggatgtt gaaaacaaca ctccgttcaa ggaagctctc aaaacgcgac     13860
     tcaaggaatc gggcggaaat ctcaagagaa aagccagaga aaatataagc gaattgatga     13920
     agggatcggg atataaaaca tccgcgaaaa tgcgcgcggc tcagtttccc tttggagggc     13980
     acgacgcacg caccggtaaa tccgggagaa gcsctgttcg taaacgcaga cgagtcggta     14040
     aaaaaaagaa atcgacgaaa atcggcgtga aaaaaacgaa taaaaaatca tcgaagagga     14100
     aagcagcggc gaaaaaaact aaaaagccga cgaaacatcg acgaaatagc gggaaaaagc     14160
     gcaccgtatc cgatatattc gcttaaccga cgcgagtgtg aatcgtaaat ttgagagata     14220
     tgtcctttct ccatacccac tcgagcgagt gtttaaagag cgagctcgat cttttcagtt     14280
     tacctcctac tcaaaccagt atcgagagtt cacaatgggt ttattacaaa ccggtaacct     14340
     cgctcgcgga cgacgcgcct atagaattcg tcgtacccgg acacggagaa gattatctag     14400
     atctcacgca taccatgcta agccttcgcg tacgagtgga aagtttaccc ggccctggaa     14460
     catcgacagg aggaggagga ggagggagca ggaggaaaca aagtaggccc tgtgaatcat     14520
     ctactacatt cgatgttcaa ccagatcgac gtgtacttca atcaaaaact cgtatcaccc     14580
     ccgaacaacg cctacgcgta ccgcgcgtac atcgaagcat tgttaaatta ttcttcaccg     14640
     gcaaaaactt cccatctgac ttcctstctm tgggacacgg acgagcccgg tcatatggac     14700
     gcgctattag aatcgggmaa ccccaatcaa gctctcgtga gacgcgcccg atacgtccaa     14760
     ggagaacgtt cggtggatct aataggtcat cttcattgcg acgtctttaa tcaggataaa     14820
     tttttaatta acggagtgga ggttagaatg agactcgttc gctcgagaga tgcgttttgc     14880
     ctcatggaaa gcaactcaac gtcgaaaata cgcattctag atgctagttt actcataaga     14940
     agagcaaaaa taagccccgc agtgttactc gaacatgcga gaatgctgag taaaacaacc     15000
     gccaagtatc ctctgacgcg agtcgaagtt aaaacattca cgattcacgc cggagtggta     15060
     ggagaatcga ttgataacgc gatactcggg caacttccga aacgagtaat agtcggattc     15120
     gtcgataaca aagcgtttaa cggcgacaga aagttaaatc catttaattt caaaaattac     15180
     ggcataaatt tcttctcgct atatgccgat ggcgtgcaaa ttccgagtag accgctgcaa     15240
     ccgaatttct caaaagacca tccgctctat gtcgaggctt ataacaccct cttctcagga     15300
     acaggcatcc attttctaaa cgaggggaat tctataagca gagaagatta tgccaaaggt     15360
     ttcacgcttt tcgctttcga tctcactccc gatctatcgg caaattgcgc tggacattgg     15420
     aatcttgtca gacatggaag tttacgatta gaggtgcgat ttgaaaaagc tattacctca     15480
     acgattaatt gtatcgttta cgcagaattc gataacgtgt tagagatcga ttcctcgcgt     15540
     caaattatcg ttgattttag cggatgagac atactcgaat ttcccccctc ccaccgttat     15600
     ctatttttca tttctatttc ttcgaaagct taacaaaaag tagccgcagt tttgctttag     15660
     acgcgaacgt cgtcacttcg tgcaaaataa attgaaagta tattctacgc atcatggata     15720
     tagttatcga tatacaaggt ttccgcgacg ctgagggaaa gtttatgccg aaggaagtag     15780
     cggttgtcgc cattaacgaa gcattcataa gtcactgcat tatgatgcct ccatatccat     15840
     ttgtcgaatt acccgaaaaa tacagacgag aaaacaactg gctctctcga aacttccatg     15900
     ggatcgagtg gtttgacgga acagtcaatt ccaaacattt catggcggaa ctatgtgaaa     15960
     ttgcacggca agcgcgttac atatacaccc gaggtcgaga gaagatacat tatttggaaa     16020
     atacactcgc aagaaacgta tataatctag aaggaatctc tcctgctttc aaaaacctgt     16080
     cggaaggcga agagcatgaa ttgcgctgcg gtcatcacgg gtttcagcga aattccgaca     16140
     aatttcattg cgcgttacgc aatgcatgca aattgagata ctggatgcaa tctcaagaag     16200
     ggaactgcta cataagcagc gctaattctt ttaccattga aagttccgat gacagtgata     16260
     cagaaagcga ggtttttaca ataaaacgaa attttccgaa tctcgttacg tggagaaata     16320
     agagattaga aaaagaacag gcgaggtgcg aacaaataaa agccgagaaa gaagatctat     16380
     cgaaactcaa gtgtgaaaaa aaggaagctt ctaccctaca atcctcgcaa gaggataaaa     16440
     atataacgac accgacgagc caaaaaacaa gtcaaacatc attccacacc gcggaagatg     16500
     aattcgctcg aaatcttacg agcgttgcat catctcagta tcgaacatgc gggtgtgtat     16560
     cctgccgaca gaatcccgag ggtgtggacg aagtcgacgg ccatcgtcgc gaacactgat     16620
     aatcacgatc gtcctggaca acactgggtt gctttctacc tagacaagca cggagaaggc     16680
     acgtatttcg atagctacgg actaccaccc ctggattcca gattcaatct acgacttcga     16740
     cgaaactcta ctactcataa atggaacatc acgcgattac agggcacatt ttctcagacc     16800
     tgtggacaat attgctgcgt atttctttat tatttgtctc gcggttataa gcttaaacaa     16860
     tttctcaaaa tattcagcga agattacgaa gataatgata agctaatcgt acaattattt     16920
     cgtaaaatct ttcttcatgg aaaaaagaaa tgtgaaaaat ctcatgtaac gtgctgtcat     16980
     atacaaactt gtacttttaa gaacaattaa acattaaaga aacactatta tggtataatt     17040
     tgtataatga tataacaata aatctaattt ttgtaacata aattctttgt ccattttact     17100
     tcctttccca ccgatttaaa accaatttta gccacataat tccaagctag aaatatctaa     17160
     tcgtttttta aatatttttc gtttgtttac catagaatta aggaacataa cctcgctagt     17220
     gtataactcc aaatgttaga aaaatctaga gtttacatct agaaaatttt ttcaatccgc     17280
     gtgtttgtct tagaataaaa gcttcgtata actccgaatt cgacgtcatc gacgtcagaa     17340
     atatatagtg cgaacctgtc cgttcccgtt ttcctcctcc caaataccgt acgacctggt     17400
     aaataatggt tattacacac cgaaaatctc atgtcttcaa aacctatatc cactcgtaac     17460
     ctatatttcc cccatacaaa aaatgtcaaa cgagtcgaga aatttatcta aattcaccga     17520
     ctatgagacg ccgagaaacc tttcgcccta agaaaaacgt gattcttcat atcccgtata     17580
     caaccagtaa attccacaaa aaatcggttt tcttctcttc gctccatccc acgtgaacaa     17640
     aaaatcgcat tccattctcg acaagtatat tccttttaca gacccgccat atttcttttc     17700
     gcagtcgcca ttttgttttc ggactccgat cggtcccaga cgctttctca cccttcccct     17760
     acctcgtcta gcatttcgac aaccaatcgc acacatgggg cactatgggt agagccaatc     17820
     acgcgtcggg cagctacgga gccaaccaat cagaacgctc ccactaatta cctaattatc     17880
     atctcccatc cccaccgacc aatcagaacg ctccatttcc acgtggctgc cagtttttga     17940
     ccgtcggggg ccacgcccct ggcgccagtg ggaaggtggt gggggtttgt tttgacgcgc     18000
     catagtgccc cacttactac t                                               18021
//
ID   Polinton-3_RPr repbase;    DNA;    INV; 10522 BP.
XX
AC   .
XX
DT   08-AUG-2012 (Rel. 20.10, Created)
DT   08-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Polinton DNA transposons: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-10522
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3329-3329 (2015).
XX
DR   [1] (Consensus)
XX
CC   A few copies in the genome. 3'-end is not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           3589..2510
FT                 /product="Polinton-3_RPr_2p"
FT                 /translation="MDPKVTQHLIKTSKSLREKFKSLKRGLQLSQQDLERS
FT                 LKPITKPLQELVEQNKKRSKKAALKSDASTSTTSLEEYVKLPLKEEEEVKL
FT                 PLKASTPIPRKDVLDIKMEEETFEDDDSPLEQIKQIHSKEELEKSLEEVEE
FT                 IGSLIKPYLLKHMTSDTKDLDDRYGIRVLPTGGMTIGNAQVAIEDNDINVN
FT                 GNWYKGTPGLLQLLFLKKPNKYTVEDLENYKDILEVSNAHKQQFSDEKXLS
FT                 SSKGFKYKNIIAPLFYPSMGEQSAQPYFTPPSTADQVTRTPRTTIATKPIQ
FT                 RRYGLRHTTTTTGKGMDVGQNVYEYWDDPNELVDRLRLLYASTSAGHTGHG
FT                 NEIHSIIEELREADIIY"
FT   CDS           4319..3627
FT                 /product="Polinton-3_RPr_3p"
FT                 /translation="MRLEKQSERLPVYNVIPSGEEQEANEGRHGQLLPDNI
FT                 RALICGSSGSGKTNLIACLLLQPNGLKFGNVYLCSRSIQQEKYLYLEXVFK
FT                 LVPEIGFHKINDTQQVITPDNAEKNSIIVFDDIAMDQQDIIRQYFSMGRHR
FT                 GIDCFYLTQSYARIPKHLIRDNANFIIIFTQDDLNLRHIYNDHVSSPSVSF
FT                 NNFKEMCEVCWDAPYSFLTIDKTRDVHNGRFRKGLDTYIYI"
FT   CDS           6295..7323
FT                 /product="Polinton-3_RPr_4p"
FT                 /translation="MEEILDVNKKVNFEERITDFEFHSHQPFNQSLDNSDE
FT                 IIIAVQQQDIYTVPAKSFLYIQGQLIKEGSKTIDPSELRIVRNGFLFLFDE
FT                 IKYQLNGVLVDHVRNPGITSTLKNYASLSPDKASGMEMSGWMMPTEYVKLA
FT                 DENGNFDACIPLDIVMGFFEDYNQIILQGKHELILHRSRTDNDSIQVLGDH
FT                 PNVKASIKLKSVQWKMPYVKVSDEQRLKFLNLVNKGKTVHMAFRSWDLVEN
FT                 PSLPTNTNKQTWSVKTSTNLEKPRYIIIAFQTNKKNNAESDMSQFNHCNIS
FT                 NVKLHLNSEVYPYDDLNIDFSKNHFSMLYYMYQNFQHSYYGKDFKQGTVQG
FT                 "
FT   CDS           join(2461..2063,2094..1135)
FT                 /product="Polinton-3_RPr_1p"
FT                 /translation="MSIDKFGRPLHHLKTVFHASDDEDGEFIDFENKRILG
FT                 INSPVGSSDAVNKIYLEQFVTEGLEKYIKKLDLVTNTYLQEQFVSKRYLLE
FT                 TYDEARKKVTDNFVRGLFTVFRNRLSLLNPNVPITAATLKTIFEPLQLRLK
FT                 RFLNHKDMSSKEAVVVELHRPARSRYPRRRTLLKGIDDLWQADLMEMIPYA
FT                 RQNSGYKYILAVIDCFSKYAWVEPVKSKSAKDITQAMNNIFISSERVPKNI
FT                 QTDNGKEFYNVSFTKLMKKHNINHYSTYSQVKSSIVERFNRTFKSMLYRLF
FT                 SLRGNYNYTKNLPDLINTYNNKVHHTVGMTPSEVNSSNEAFLLANVYSSKV
FT                 KRKDKQRFKEGDFVRVSKKRTIFSRGYTPNWSTEVFKIINVRNTIPYTYLL
FT                 EDLTGQPIQGAFYAQELQKTKYKDVYLVEKILRRKNDKLYVKWLGFKKPSW
FT                 INKNDLVE"
FT   CDS           join(9660..8923,8919..8395)
FT                 /product="Polinton-3_RPr_5p"
FT                 /translation="MENLRNRRNIKLVCDAKKLEKLISKPTFIDRTLYGEN
FT                 LAAVHMAKTVIKFVKPIYIGLSVLDLAKHTMYEYHYEVMLPKYGPEKLSLA
FT                 YMDTDSFIYFIRTNCIFQDMLAMLDYLDTSDYPNDHLCFSTKNKKKLGKFK
FT                 DEACGRIITEFVGLKAKMYAIRFEDNFKEILKAKGIQNSALKKFIQYKDYL
FT                 KCLQTKCVMRTPVNNIKSIKHDMFTVKINKISLSPHDDKRIIDANGINTKA
FT                 IGFKEFFCLLDVLKCGDDAYLNEEILQIIERIFFHPMDEVLEIIKRNLKMF
FT                 ASFNIASFAVQNNTNEYHIFVNLKNFYSKLFIPHIVAVNNLNFLNRKNVNG
FT                 IPYLSFFNKLTVFVFIFKSIGPTSLNSVKYSLRLNHTSSRNPYVVICKNNC
FT                 IIPLLFKNVNPLSLKLISVYALLTCVE"
XX
SQ   Sequence 10522 BP; 3428 A; 1760 C; 1796 G; 3519 T; 19 other;
     agtagaggga aaaagagaga tctggcgcat tacgtcatca acgtcggatc caaatcccct        60
     ccttccttca tgtgggttgg ggggttgggg gtcaggttaa tataagaaaa aaagtttttt       120
     aaaatactcc tagcttcgat cctgcgatct tttactctaa agtcagcaac tctaaccact       180
     agaccatcag tgttactggt aaaaatatgt attatttaag gtctatcaag ttggggcggt       240
     cactccgcct ttcctcgccg tagctgtgcc gatggagcgt gaggtgtatg tgtgtgtgcg       300
     ggggggggga tgtattgcat tctccacagc ttcatctctg ttcacggtta gatccccccc       360
     cctattcgat ggttaggagg gtgctcttcc acgtccctag ctgtacagtt cctcaagtaa       420
     cttccgttat accacctcct ctctcagttt aattttttac cgatattttt ttaaacgttt       480
     tggtgaagag tgagtggggg gggggatcta caagactttc agtgatttct acttttataa       540
     catcagtttt acgcaaacat ggctatgagt gaaatgggtc tgcagctgac tacaagtttt       600
     ccactcaaca aaaacaactc caaggtattg attactggtc tctcccaaga ttatgtgcct       660
     ctaatagcgg tgagatcgag aaaagatgtt atttatctag atgtkgaaga ctggacaact       720
     ttgaagtcaa gcatgcagac tttcagtgac ttcttcaatg ggaaagaagc ggttccgtcc       780
     aggtgaaatc aacctcagca aagcaacagt atactttgtt aagttcacgc acaagacgat       840
     ttccatccgg gggaaagcaa cttggttgga ggacctccta agttttcaac ctacgaagat       900
     caacctgcta agaaatgaat acttaaaact tcagagcttg ttagaagatg taaatgttca       960
     attggattat ttatcaaaac tttgtgttcc taatacattg tttccatatt ataaagaaaa      1020
     ttaataaaca ttttcacccg caaactaagt tttttttata ttttataaat tcctctaaaa      1080
     tgtttttagt aaggagagga taagagagaa aaaaaaccta cacaaacttt attattctac      1140
     taaatcattt ttatttatcc aagagggttt cttaaaccct aaccacttta catacagctt      1200
     atcattttta cgtcttagta ttttttctac aagatataca tctttatatt tagttttctg      1260
     cagttcttgt gcataaaatg ctccttgaat aggctgtcct gtcaaatctt ccaacaagta      1320
     agtatatggg atagtgttac ggacatttat aattttaaat acttcagtgc tccaattggg      1380
     tgtgtaacct ctgctaaata tagttctctt tttcgaaaca cgtacaaagt ctccttcttt      1440
     aaaacgttgt ttatctttcc tttttacttt agaagagtat acattagcta gtaagaatgc      1500
     ttcattgcta gaatttactt ccgatggtgt cataccaaca gtatggtgta ctttgttgtt      1560
     gtaggtattt atgagatcag gtaagttctt tgtataattg tagtttcctc tgagactaaa      1620
     taagcgatac agcatagatt taaaggttct attaaatcgt tcaacaattg aacttttaac      1680
     ttggctgtaa gtactatagt gattaatgtt gtgcttcttc atgagttttg tgaaggaaac      1740
     attgtagaat tccttcccat tatcagtctg aatatttttt ggtactcttt cacttgaaat      1800
     aaaaatatta ttcatagctt gagtgatatc tttagcgctt ttggacttaa caggctccac      1860
     ccaggcatac tttgaaaaac aatcaatcac tgctaatata tatttgtaac cactattttg      1920
     acgagcatat ggtatcattt ccattaaatc agcttgccat aaatcatcaa tacctttgag      1980
     caatgtacgc cttcgagggt agcgtgaacg tgctggtcta tgaagttcaa caactactgc      2040
     ctctttgcta gacatgtctt tatggttcaa aaatcgtttt aagcgtagct gcagttatag      2100
     gaacatttgg gttcaataaa cttaatcggt tcctaaaaac agtgaataaa ccgcgcacaa      2160
     aattatctgt aacttttttt cgggcttcgt cgtacgtttc taaaagataa cgtttactaa      2220
     caaactgttc ttgtaaatat gtatttgtta ctaaatctaa cttttttata tacttttcca      2280
     atccttcagt tacaaattgt tcaagataaa tcttattaac agcatctgaa ctaccaactg      2340
     gactattgat tccgagtatt cgtttatttt caaagtctat aaattctcca tcttcatcat      2400
     cactagcatg aaatactgtt tttaagtgat gcaaaggtct gccaaacttg tctatagaca      2460
     tatcgaaaac caaacaacaa ctgataattt attccacaag taattcctaa taaataatat      2520
     ccgcctctct caactcttcg attatagaat gaatttcatt tccatgtcca gtgtgaccag      2580
     cacttgttga tgcatataag agccgaagtc gatccactaa ttcatttgga tcatcccagt      2640
     attcataaac attttgccca acatccatac ctttaccagt agtagtggtc gtatgtctta      2700
     gaccgtatct tctttgaata ggctttgttg caattgtagt ccgaggtgtc ctagtaactt      2760
     gatctgcagt tgatggtggt gtgaaatagg gttgagccga ctgttcaccc atagaaggat      2820
     aaaataaagg agctataata tttttgtatt tgaatccttt gctkgagcta agakgttttt      2880
     catcactaaa ttgttgttta tgtgcgttac taacttctaa aatatcctta taattttcca      2940
     aatcttctac agtgtatttg ttcggctttt ttaaaaataa taattgtaat aacccaggag      3000
     tacctttata ccagtttcca tttacattga tatcattatc ctcaatggct acctgtgcat      3060
     ttcctatcgt catgcctcca gtaggtaaca ctctaatgcc gtatctatca tctagatctt      3120
     tagtatctga agtcatatgt ttcaataaat atggttttat taaagatcct atctcttcta      3180
     cttcttctaa gcttttctcc aattcctctt tactatgtat ttgttttatt tgctctagag      3240
     gagaatcatc atcttcaaac gtctcttctt ccattttaat atctaaaaca tcctttcgtg      3300
     gtataggagt tgaagcttta agcggtaatt tgacttcttc ttcttctttg agcggtaatt      3360
     taacatattc ttcaagtgat gtcgtagaag tcgaagcgtc agattttaaa gcggcttttt      3420
     tagaacgctt tttattctgt tcaactaact cttgaagcgg ttttgtaatg ggctttaaac      3480
     ttctttccag atcttgctgt gataattgaa gacctctctt taaacttttg aatttttctc      3540
     gcagagattt agaagttttg ataagatgtt gtgtaacttt aggatccata atgaaaaatg      3600
     atagaccgat ggaaaatatt gctctatata tagatgtatg tatctaaacc ttttcgaaat      3660
     ctaccattgt gtacgtctct tgttttatct attgttagaa aactgtatgg tgcatcccag      3720
     cagacctcac acatttcttt aaaattatta aatgacacac ttggtgaact tacatgatcg      3780
     ttatagatat gccttaaatt taaatcatcc tgcgtaaaaa ttataataaa attggcatta      3840
     tcacgtataa gatgtttagg aatccttgca tagctttgtg tcaaatagaa acaatcaatt      3900
     cctctatgcc ttcccatact gaaatactgt ctgattatat cctgttgatc cattgcaata      3960
     tcatcaaata ctatgataga attcttttca gcattgtcag gagtgattac ctgctgcgta      4020
     tcgttgattt tgtgaaaacc tatttctggt actaatttga atacgstttc taaatataaa      4080
     tacttttctt gttggataga tcggctacat aagtacacat ttccaaattt taacccattc      4140
     ggttgtaaaa gcaaacaagc tatgagatta gttttaccag accccgaact accacaaata      4200
     agtgcacgta tattatcagg caacaattgg ccatggcgac cttcatttgc ttcctgttct      4260
     tcacctgaag gaatcacgtt ataaacaggt agacgttcac tttgtttctc caaacgcata      4320
     ctgatgatga tggstctaat tcacaaccta tataagcaga wtcagagcka aaatagtcaw      4380
     cataawgaga aggaaaacaa cgggtakagg tctgataaat tcggtgatta acaagcttcc      4440
     atttgaagcg cataktccag gatatagatt ttgtggcccc ggaactaaat tacaagaaag      4500
     attawgccgt ggtgataaag gtgttgaccc ttcagacgaa gcctgtaagg aacacgacat      4560
     tgcatatttt aaaaacaaag atttgaactc aaggcataaa gctgatcgca tcttagcgga      4620
     aaaagcttgg caaagaacaa aatcaagtga ctcatctttt ggtgaaaaag ctgctgcttg      4680
     ggctgttact aacgctatga aaatgaaagt aaaattggga ggwggtggtg gtatcaagaa      4740
     gaagaaaaaa actwwcaaag atgtaataag tgcagctcgc gtcacatcgc ctacatcaat      4800
     tagtggagcc kccaaaacgg cactcaaaaa agctaaaaag tttttatcaa aatcaaaact      4860
     agacaaatta ccaagaatat tgccagttcc aagaactgga ggtgttctcc cttttctggt      4920
     accattattt gcaggtttat ctgctctagg aagtctagca ggtggagcag cagcggttgc      4980
     taaggcagtt aaagatacga gagatgctag agaccgtcta gaggaaatga gacgtcacaa      5040
     tcagaagatg gaagaacaga aaattggcca aggtttctac cttaaacctt ataaaaaagg      5100
     atatggtctt tatattaagc aatattgact actactacct aacagagctc tcacaaatat      5160
     agagttgatg aaatttgcca aaaacgtacc tcattttaga ggtgtttata tgcgtgattc      5220
     tttgccaagt tatcctaaaa ctaatgaatg tgctattgta aatctagatt cagtgaaaaa      5280
     cataggtact cattgggtcg cctatattaa aaaaaataat gaagtaattt atttcgatcc      5340
     ttatggaaat ctaagaccac cgttagaact cctacattat ttcagaaact gtgwtattac      5400
     atacaatcgt agaagatatc aagattggaa tacaccatat tgtgggcatt tatgtttgaa      5460
     atttctatat aataacgatg aataagcatt tacggaattc agtcatgtcg tacaccttta      5520
     ccttaacagg agcttcaagc attcttagtg ccgtcttttc caccaattaa tttaggtggt      5580
     gtttagcatt ggtttactaa gttttcagtc atataccgaa tatcattgaa ggatttaaca      5640
     atctttttca ttatggagac aatgttatta gtttacctac aggaattatg aagtgaagca      5700
     tagcgcgtta tctaaaatca catataagcc agattcattg aattgaaagg taataccaac      5760
     acattgaagg tggaattaac atgtacacaa cctgtttact tcaataaaga acattcgatc      5820
     ggccctttac tgggctttac taaacatgag gtgttagaaa aaatgatcac tcataaatca      5880
     gacgaaattg tacagattca tagtgtcaat acagttgcaa ttaactgtaa tatagcatcc      5940
     ggttcatata gaaacgggaa accaggacat actatatatg aattttcacc attagttcct      6000
     ccaggattta agatcgtaca agaaccttct ccagtcattt actttccagt tatcggtgaa      6060
     gtaatcaaca atataacact tgttataaca gatcaaaacc agaacttagt ggattttcgc      6120
     ggagagacaa ttaccatcag attacatcta aagaaaaatg ggtattgatt ttcgaaagta      6180
     taaaatggat tacgctgaag tgaaatcagc tagtattcaa cgattacctt accgagcgtt      6240
     aacaccatca aatatatact ttctacaaag tataggactt ttgattaaac caaaatggaa      6300
     gaaatactag atgtgaataa aaaagtgaat tttgaggaga gaataacaga ctttgaattt      6360
     cactctcatc agcctttcaa ccaatcattg gacaattctg acgaaataat aatcgccgtt      6420
     caacagcaag acatctacac tgttccagcc aaaagttttc tatatattca aggacaattg      6480
     attaaagaag gttctaaaac tatcgatcca agtgaactga gaatagtaag aaatggattt      6540
     ttgtttttgt ttgacgaaat caagtatcag ttgaatggtg tgctggttga tcacgttaga      6600
     aatccwggaa tcacaagtac attaaaaaac tatgcatctc ttagtccaga taaggcgtca      6660
     ggaatggaaa tgagcggctg gatgatgcct actgaatacg ttaaattagc tgatgaaaat      6720
     ggtaattttg atgcttgcat tccactagac attgttatgg gattctttga agattacaat      6780
     caaataattc tacaaggaaa acatgagtta attctacatc gcagcagaac ggataatgat      6840
     agcattcaag ttttagggga tcaccccaat gttaaagctt ccattaaact aaaatctgtg      6900
     caatggaaaa tgccgtatgt taaagtktct gatgaacaaa ggttaaagtt tttaaattta      6960
     gtcaataaag gaaaaaccgt tcacatggca tttagatcat gggacctcgt agagaacccc      7020
     tctctgccta ctaatactaa caagcaaact tggtctgtga agacgtcaac aaatctagaa      7080
     aagccccgtt atatcataat tgcatttcaa acaaataaaa agaataatgc agaaagtgat      7140
     atgtctcagt ttaatcactg taatatatca aatgttaaat tgcacctaaa ttcagaggtt      7200
     tatccttatg atgatcttaa catagacttc tcaaagaatc acttttcaat gctatactat      7260
     atgtatcaaa atttccagca cagttattat ggaaaggatt ttaagcaagg aacagttcag      7320
     ggatgaggga ccgattatcg tcatagattg ctcgcgtcaa atagaagcgg ttaaagccag      7380
     ttccgttgac attagaatag aattggaagc tgcagaaaat tttaaagctg gtacaacagc      7440
     ctacgcttta attttacatg atgcactagt tgaatataat ccattaacag gtttagttag      7500
     aagaatataa gggaggggag gtagtattaa tagaggagat ttggaggaga aaatcagttc      7560
     ataatgcgtg ctggtgtaat tgacttccag ggttatctta ctcctcaaaa ctgttatatt      7620
     gccaaggaag tgactatcat aaatgtggac tctccttcag tgttttggca ttggttattc      7680
     aaacctcctt ctcaagaaga ttccaaaatt tatctacaaa caaatgggta tttcataccc      7740
     ttcatgaaat aaattggtat gatggagatg tagaatattc tgaattaaga agcttgtgtc      7800
     aaaaatcaac agaaaatttc acgatattgt ttgctaaagg tcttgaaaaa tctgtttttc      7860
     ttgaaaaact tattggaaaa gaagtctttg atcttcaaga ttttggctgc ccatcactga      7920
     aatgtctcac ttcaacaatg gaatttatta aatgtatcta ccattgtgga aagaaatcca      7980
     actgttcatt aaaatttgca aagatattag ccgattggat ttcaaataat agatcaaagg      8040
     tggatcttta tgatgcaaga ataagagaaa aaacattcaa tcattggacg ggatcagtga      8100
     atgcaagttt actttcattt aatggcttct tctacacaag aaaacacacg ttaaaatgta      8160
     tttattgcgg gcttgaactt ttagacaata ttcacttttg cccttgtgct gtacataaat      8220
     taaataatcc aaagtgcatt tggtttgtaa aaaatggttt aatagaataa acaatttttt      8280
     tttaatctct tgtttacttt ttttgttttt cctaacctaa ttatgatata gtttaaagga      8340
     aaaaaaacat tttttttctt ttcagccttt attactaaaa agcagaaatt attattcaac      8400
     acaagtaagt aaagcgtaaa cgcttatcag ttttaaagat aatggattta catttttaaa      8460
     aagtaatggt ataatacaat tgttcttaca tataacaaca taaggatttc tgcttgaagt      8520
     atgatttaat cttaaagagt actttacact attcaatgaa gtaggaccaa tgcttttaaa      8580
     aataaataca aaaactgtta atttgttaaa aaaagataaa tatggaatac cattcacatt      8640
     ttttcggttt aaaaagttca aattgtttac tgcaactata tgaggaataa ataatttaga      8700
     ataaaagttt tttaaattta caaaaatgtg gtattcattt gtattgtttt gtacagcaaa      8760
     agaagctata ttaaagcttg caaacatttt caaatttcgt tttataattt ctaaaacttc      8820
     atccattgga tggaaaaaaa ttctttcaat tatctgaagg atttcctcat ttaaatatgc      8880
     atcatcgcca cattttaaga catctaacaa acaaaaaaat tattctttaa atcctattgc      8940
     tttagtattt attccattag catcaattat acgtttatca tcatgtgggg ataaacttat      9000
     tttatttatt tttacagtaa acatatcatg ttttatggat tttatattgt taactggtgt      9060
     tctcatcaca catttggttt gtaaacactt caaatagtcc ttatattgaa taaatttttt      9120
     taaagcagaa ttttggattc ccttagcctt taaaatttcc ttgaaattat cttcaaaacg      9180
     gattgcatac attttcgctt taagacctac aaattctgta ataattctcc cacaagcttc      9240
     atctttaaat tttccgagtt tcttcttgtt tttagttgaa aaacagaggt gatcattagg      9300
     gtaatctgaa gtatccaaat aatctaacat agctagcata tcctgaaata tacagtttgt      9360
     ccttatgaag tatatgaatg aatctgtatc catatatgca agcgagagct tctctggacc      9420
     gtacttagga agcattactt cgtaatgata ctcatacata gtgtgcttag ctaagtctaa      9480
     aacacttaaa cctatgtata tcggtttcac gaattttata acagttttgg ccatatgtac      9540
     tgctgctaaa ttttctccat aaagtgttcg atctataaat gttggttttg aaattaactt      9600
     ttccaatttc ttggcgtcac atactaattt tatatttctt ctatttcgca gattttccat      9660
     cgttttccca taaactgaat tgttataaag cttatataaa tctttttcaa agttattcgt      9720
     tgcagatgca cgaagattgg tattatattc aatgaatggt cttaaaaatt cacgttgacg      9780
     aaatttcaac gctctattta ttttttttaa aataatccca tgtcttaggg cttgttttaa      9840
     agctacgtaa tgaacaatgt aattatttct atcgtttaaa tgactgttgg agttgactgt      9900
     tgtgattgat actgaacggt cacgtttagt gtgctctgca ataaattcat ttttttttag      9960
     tggttaaata acggtatttg aatcggattt ttggtgatat tgtgtaaaaa gtgtttttaa     10020
     tcattttatg aaattggttt tgttaaaaac taaagaacag tttaattgca gttaattaaa     10080
     ttagccagat tctttttaat tttagagtta gaatttggtt tgtttctata tgatcagtag     10140
     agtggggggc acctggtttc tgataacaac aggtagaggg agaacagtag cagcaggtag     10200
     acacgcccac tttgttacaa atctagtact tgcattagta aattagactg attagagata     10260
     actgctactt tcgaatctct atgtgtgatc gtacacagtc tagttgtaat tttgataata     10320
     ctgcaacaga gtcagtagat aaacctgcaa aaagaaggag gagcaacagt tcgcctgaga     10380
     taaaaatgag taaaaaacaa cagggtgcag aatcaagtga gaagattgag tttacggcag     10440
     caaatatgga aaatttattc ggcaaagtaa atgaggtgtt agttaaaata aactcactgc     10500
     ctacaagaga agattttaat ag                                              10522
//
ID   Polinton-3_TC repbase;    DNA;    INV; 17681 BP.
XX
AC   AC154128;
XX
DT   15-MAR-2006 (Rel. 11.02, Created)
DT   15-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   A family of autonomous Polinton DNA transposons - a fossilized
DE   genomic copy.
XX
KW   Polinton; DNA transposon; Transposable Element;
KW   Interspersed repeat; Maverick; Tlr; Polinton-3_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-17681
RA   Kapitonov V.V. and Jurka J.;
RT   "Self-synthesizing DNA transposons in eukaryotes.";
RL   Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006).
XX
DR   GenBank; AC154128; Positions   37011   19331.
XX
CC   This transposon is characterized by 981-bp terminal inverted
CC   repeats and a 6-bp target site duplication. It encodes a family B
CC   DNA polymerase (POLB-3_TC), retroviral integrase (INT-3_TC),
CC   ATPase (ATP-3_TC), cysteine protease (PRO-3_TC, corrupted by a
CC   stop codon) and one unclassified protein (PY-3_TC) conserved in
CC   Polintons from different species.
XX
FH   Key           Location/Qualifiers
FT   CDS           5444..4224
FT                 /product="PY-3_TCp"
FT                 /translation="MSASKLQVYSSPEIDDSISKEEEHTYSPQVRSFDNND
FT                 EIEIIINQRDIWISLFESFIQVDGEFIPDPVPETGGGNVTLTNNAAAYLFE
FT                 NVSYELNNVELDSVREVGTVSTIKTFLCYGKDEVRALTLAGWNDQESQQLK
FT                 TFNETDNTFSFRIPLSYLLNLPFDYHRIVSGHQKLRLIRSRNDANCFISTG
FT                 TRKATLKINNIELKAKHVYPNDEIKLTILEGINKDRVISLPFRKWEIHELP
FT                 SVRQTNNDIWRVKTSTQLERPRFIIVCFQTNRKNNPKSDVTLFDHCDVRSV
FT                 RLWLNSNVYPYETWKLQFAKNKYLEAYQAYVDFYKEFNGKDRAEPILSYTD
FT                 YTKRPIFVLDCSKQNEAIRSSTIDISLEFESDNNFPADTRAYCIIIHDRIM
FT                 QYYPLTGIIRQLI"
FT   CDS           6692..6123
FT                 /product="PRO-3_TCp"
FT                 /translation="KKLPIKLPNRALTDNDLRRYAKLLKLPKFKGVFMRDE
FT                 LIHMKPDKTECAIINLDSKKGSGTHWVCYRKTNKQVDYFDSYGNLKPPLEL
FT                 VRYLGNCNIYFNHDRYQFLSYNCGHLCLMFLHNKR*DNHVFYSVMYKTFSL
FT                 TGVESTLSEHYEPPIDLEENSNYSIALIGFYTNNNIPNIEEGTNKFYYFAP
FT                 "
FT   CDS           10386..11330
FT                 /product="INT-3_TCp"
FT                 /translation="MVRLKQVSDVKQKLVNEIFKPARRNFKRRRTIIKGLD
FT                 DLWQVDLAEMQNLSYHNNGFKYILVVIDCFSKFLWTRPLKSKSANEVSRAM
FT                 ESILKNEKERIPKNLQSDQGKEFYNTTFQDLMRRYNINHYSTYSVKKAAIA
FT                 ERVIRTLKSKIYRYFTLFATHKWINKLQEITKNYNTTIHRTTGRKPTEINA
FT                 SNQGDITAYDHLKIVDKNRKKFKVGDFVRISKEKMLFEKGYTPNWSTEIFK
FT                 ISKINLTNPVTFLLEDKEGQPIKGAFYIWELSKTQYPDVYLVEKVIRRKGT
FT                 KLFVKWLGLPDNQNSWIEMKDIT"
FT   CDS           7541..8233
FT                 /product="ATP-3_TCp"
FT                 /translation="MKVLKQKLQLPIINHDYNNVDNKHKMSHRHGTLLPES
FT                 IRCIICGPSGGGKTNILLSLLFDPNGLKFENIYIYCKSLYQPKYKLLSDVL
FT                 QKIKGMEYNQYEHNEDVLDPKDAKNNSIFIFDDVIMCNQAKIRDYFCMGRH
FT                 KNIDSFYLCQTYTKIPKHLIRDNANLLVILKQDLLNLKHVYEDHVGADMKF
FT                 EQFCEICQECWKNQYGFLVICKDNELNKGRYRKGFDHFIQV"
FT   CDS           13367..16549
FT                 /product="POLB-3_TCp"
FT                 /translation="MEILFLELNINKFNPLRASTYIPLPKDIAKRRAVINI
FT                 HNDDNECFKWSVLAHLHSTEVNVNRHRVDAYREFEEELDFTDISFPVKLTD
FT                 IFKFEALNNISVNVYGTEQRFDHEKGKWVSDIIGPFYLTSKKRDIHVNLLL
FT                 IVDDERMIKHYCLISNISRLISSQLSKHNHAKFICNGCLLFFSSEQKLVKH
FT                 RKYACNEVVTTLPTSDLIINKFGKEVPGNELTFQNFDKSLKVPFVFYFDFE
FT                 SILKPLRNDNSADNIRTIVTHLHEPYSFGYYIKCAYNDNLSIYRTYRGKDA
FT                 PKIFVKWLQDDVNRLYHDHLKHIVPLEMTPLDELVFQISTHCHLCKEPFKT
FT                 DYGSLNCDRVRNHCHLTGEFLGPAHSICNLNYKIPKYIPVFCHNLTNYDSH
FT                 LFIKALATEKTIINCIAQTKEKYITFSKKILVDKVMNTTTNTVDNIFITLR
FT                 FVDSFRFLSFSLDKLSQTLTSNECLTIRKHFPDDNQFNLIRQKGVFPYSYL
FT                 DCFNKLDDTSLPLIQQFYDNLNKTDISEHDYERAQEVWNLFDCKTLGDYSD
FT                 IYLKSDVLLLTDIFENFRKVCLKIYELDPAHYLTAPSLGWDAMLKMTGIKF
FT                 ELLTDIDMVHFFRKSIRGGLCQCSKRKAVANNKFLSNHDPSKPTSFIMYLD
FT                 ATNLYGAAMSEYLPYSGFRWEDPNEFNDNLILNLTDNADVGYIFEVDLEYP
FT                 SELHNLHNDLPFCPEKFIPPSSKTEKLCATLNNKVHYVLHYRNLRQAIQGG
FT                 LKLINIHRVLSFNQSPWLKTYIDLNTEMRNKSKNALEKDVFKLMNNSVFGK
FT                 TMESIDKRVNVKLVTSWNNIGRKPGAESLIARPNFKNSSIFTPNFVAIQLE
FT                 NEKVFYNKPLYVGFTILDISKTIMYDFYYNFIKLKYGNNATLLYTDTDSLV
FT                 IEIFCENIYDDIKSNIERFDTSNYKAENIHGIPVSSSVIGKMKDEYKGRVI
FT                 SEFLGTGAKAYCVDVEGELSKKAKGIKHNVITSELHKIDYQNAVTVPNTEI
FT                 IKEMNIFRSKLHNIYTELKKKIALSFKDDKRYILNNSEGRTLSWGHKNILP
FT                 QTQE"
XX
SQ   Sequence 17681 BP; 6215 A; 2711 C; 2788 G; 5967 T; 0 other;
     agtagataga gatagccggt tcaaaaacca cctccacctc cctctactgc gcatgtgtga        60
     aaattgtgtc agtcagccgc agacgcaagc gcgtaatcgc agctcgctgg cctgcgacca       120
     gctggtcagc cggcctgcgg ccgactgacg ccatttgtga tgatgcaaat atatttatgt       180
     agtataataa taataataat aataataatc gtcgccatct tggaagtttg aaagtcggcg       240
     gcggtcattt ttgtttaatg gtaaattggc gccaaattta aattatttca aaattaatat       300
     ttgaaattag tcggccatgt ttgtttgtta aaaaaaatgg cgccaaaatt ttaatttatt       360
     taaaaattaa tattgggtgt aatgttggta gcgccgatgt cgtcacaaat tccgcctaaa       420
     ttctcacgtt agatggcgcc acggtctgca aacttttcgc tagatggcgc tgccgtcagc       480
     gcagccgtca atcaaagatg gcgctggcct ccattttttt tttttaaaca caccccccgc       540
     ccgtttgcga atatgcaacc aagaaaacaa gtagtagtag tagtagtagt agtagctttt       600
     tggggttgtg aaatttttgg tttttggggt tgtgaaattt tgaatatatg atttttgaaa       660
     tgtgcaattg tgaatacatg aagtatatat acaatacatg ctgtattgag ttaagcaaaa       720
     tatcagaaaa tcatcgcgct tgtcactaat aactaataaa ggaaagtcat tattttatcg       780
     ataaggaaaa aaaacctagt atatgtagtt ttttattttt gtaatgttgt ttgcctaact       840
     tgtctgttgc gcaccaagtt tattttgtta tttgtttaaa atataatgca aaaaaagttg       900
     ttgttgttgt tgttccttcc atggggagtc gaacctcagg taggtagagt ggatagtgct       960
     gtctattttg gaaacctgaa aaaaatcata aattagtttt ttaaatagag gtgaacatga      1020
     cacttaccaa aaaattttac attaatcttc gtgaacaata cgttcgaaat taaaaatgtg      1080
     ggcatcatgt tcctgatttc cattagcttg cttacgtccc atataaatca aataagatcc      1140
     gagtccttcc attagtgtcg taattatggt atcattcata actgctgtta gtcgtttagg      1200
     taaaaaaact ttaccgacgt tgtccagata tgctaccatc ataaccccat gttgtgtgtt      1260
     tgccttggtt aaattgatga ttttatattt cttgttcact tccaaatcgt tggcactgac      1320
     atatgtatca gtatattcac aggcagcaat tttattcaga tttaatagtt gatcagccat      1380
     tacagaatcc tttgaaattt aaatgcaaaa atacacagcg gagcacatac aacttctcac      1440
     aaagatagtt ttaataaaac tggtgaaatg tgtaaaaaac ggaactttta taatcaattt      1500
     ttgcggttaa cagataacac gctttcctaa aaaataaaaa tgaaataaaa tatgatttaa      1560
     tactaatttt gtggtttacc ttatcgtagg aattttgtga cgcacttttt gtttgataaa      1620
     aatttgataa aaattttcct aaaaaattaa acacattttt agcaatcaaa tgtggtaaac      1680
     aaatttaaaa aattaaagaa tttaccaaaa aaagattatt tatgttggtt ttagagaaga      1740
     attcagtagt ctgaatcgga agaatttgtg gatgaagaac ttgtgccgaa gtcaatattt      1800
     tcgataaact tacgatgcgt ctttttggca caacttttgt aggtctgaag ctgaattaga      1860
     tgtttaaatt agatgtttag aaagaacgtt ttattaagtt gtaatataaa cttactgtaa      1920
     acaaacactg atgaatacac caactacacc aactatcttc ttcacgagta taatctgtta      1980
     aattttcaac caggactgca ttgtgtgtaa taatcttttt aaaagataat tttttcaatt      2040
     gaattaagat gggttctcgc ggacaattaa tgttaaatat agataaagtt ttaggtcccg      2100
     cttgtatgac actcttagta aactcatcat attcaaagta attattttca ttaaaaaagt      2160
     acagctttcc gtttaaatat ctaaatgtcc ttgttatttt attaggaaca ccttcaaata      2220
     attcgtttgt taaaccagga acattatatc cagagatgca actagataat gtaatatatg      2280
     tattatctct gagaaaaaga taaataccac ctgagtaagt tgttatcgct gccgaaattg      2340
     gacttgatat tttaaattct tcgcttatag atttcggata attagtttta aatctaaaag      2400
     tagataatga aaaaaatata aacttcagct tttacaataa ttactatatc atctgttgag      2460
     ggtttatgat aaattgttgt aaattcttca aaatcttttg gtaaaaaatg ttaaccgccc      2520
     agtaattaat taaggttttg gatatgaatt tttacctatt tcaattaaac aaatccactt      2580
     tttttataaa agatgtataa atgtgtttta actattagaa atgtatatat tgtttgtaaa      2640
     ctattggata taaatttttt ggggaaaatg attgtaacga taaattaata atcaaataca      2700
     actggatatt tataaaattt ttgattcata aatttacaag aaaaaaacgt tagacaggaa      2760
     ataagatcac aaaaataatc agaatgaata ttatttttta ttatacataa aacaaactac      2820
     atacttaaac taaaaaagtc atacacctaa ataaattttt aattgcagtt tttaagccaa      2880
     acctaacgct atgaacatca taaaaaacgc tatgaacatc ataaaacgat ccaacatgta      2940
     tgaggtttaa tgtacccata cccaaatgtc aattataccc cgctcctcat cggtgtctat      3000
     cgcggcggtc aagcgcccca cggtaaaaat atcaaaataa cctccaaggg atgggggcgg      3060
     ttccagtcgc agatagatgt taataaggga aacccactcg aaggtgcccg cgggaatttg      3120
     ggtgaggagg tggtccacct cctcttcggt taacccagcg tggttaacaa ccaaatctgg      3180
     gttatagtcc ccatagtaac ctgcgggatg ttctgtaaca aaagaaagag aaatttaata      3240
     aatagattac attaatttat taagactgat gatgaagtgt tgtaattaaa tttcaaacaa      3300
     ttgattcgga aaaaatttaa aataaaataa tgtaaaaatt atttctactt actagacatg      3360
     atggttgtgt tgactgttga tatttcaata aaaattattt cacacactaa aagttgatcc      3420
     ctttatactt tttgtaatct taactagagt ggagagggca ggttaatgaa gtaggagaag      3480
     gaaacgagat taaaacttta aacgtttatt tcggtaaatt ctgaattaca taattataaa      3540
     taaaccgtac attattaaga ctacagatac atattttagt ttttaagtaa tgatgcatac      3600
     ataacggaag ttgtggttgc aattttggac aagagtttgc ttcctccaaa ttgatgatcc      3660
     tagggtaaaa gtcctttgaa tcgaaaaatt gtcttaaaaa atcctcttta acgcttcctt      3720
     ttacgtaaat aatatcgata acatcatcga taatattttc ttctagtatg ttataaatat      3780
     tttcatagtc gatatttcca ctgttgtaac gtaatagatg atgatttaat tctaaatatt      3840
     tcacttgttt ttttacatct gcacttagtt gacgaaacgg caccggtgat ttaaacaaat      3900
     agtgaccagt tcgatgtcca tcaaatattg ttaattcttt aacgatgaat tcaggtatat      3960
     aaaatccttg aacatcaatc actactacct tcatgttgaa cacttaaatc tagactgaaa      4020
     aatttgttca cgatgagcag aatttaagat ctcctttaaa atatttttca tttgattaat      4080
     tctaaactta aacctttctc tgtctgcagc gcattgtatc caatagtttc cttttctagc      4140
     atcttgataa gcatatgacc aaactattag attatgtact tccggagcac tatcacttat      4200
     agtaacactt tttttcatcc ttatatcagt tgtctaatta ttcctgttaa cggatagtac      4260
     tgcattattc tatcatgaat gataatacaa taagctcttg tatcggctgg gaaattatta      4320
     tcgctttcaa attctaagct gatatcaatg gtggaacttc gaattgcttc gttttgcttg      4380
     gaacagtcta atacaaatat cggtcttttt gtataatctg tatagcttaa tataggttca      4440
     gcacgatctt ttccattaaa ttccttataa aaatcaacgt aagcttgata tgcttctaaa      4500
     tatttatttt tagcaaattg tagtttccat gtttcatatg gataaacatt tgaattcaac      4560
     cataaacgta cgcttcttac atcacaatga tcaaatagag taacatcaga ctttggatta      4620
     ttttttcggt ttgtttgaaa gcaaacgata ataaatcttg gtctttctaa ttgagtagat      4680
     gttttaactc tccagatgtc gttattagtt tgtcgaactg atggaagttc atgaatttcc      4740
     cattttctga acggtaacga tataacacga tctttgttga tcccttctaa tatagttaat      4800
     ttaatttcat catttgggta aacatgtttt gcttttaatt caatattgtt aatcttaagt      4860
     gtcgcttttc tcgttccggt agaaatgaaa caattagcat cgttacgact tcgtattaat      4920
     cgaagttttt gatgaccgct aactatccga tgataatcaa atggtaaatt taacagataa      4980
     gataaaggga ttctaaatga aaacgtatta tcagtttcat taaatgtctt cagttgttga      5040
     ctttcttgat cattccatcc agcgagagtt aatgctctta cttcatcttt gccataacat      5100
     agaaaagttt tgattgtaga tactgttccg acttcacgta cactatctaa ctcaacatta      5160
     ttcaattcat agcttacatt ctcaaataaa tatgctgctg cattattagt caaggttaca      5220
     tttccaccgc cagtttccgg taccggatct ggtatgaact caccgtccac ttgtataaat      5280
     gattcaaaga gagaaatcca aatatctctc tgattaatta taatttcgat ttcatcattg      5340
     ttatcgaaag atcttacttg cggactatat gtatgttctt cctctttact tatgctgtcg      5400
     tctatttccg gtgaactgta aacctgaagt ttgctggcgg acattatatc ctaacgattt      5460
     aagaatctgc acgctctgat gtgataatgt cgactgatga caagatactg actgataatt      5520
     tgatggattg tatgattttt tatattgatt ttgaaacact aaacccatgt ttatgcttct      5580
     tttttcagag caagacgaat attgattgtt tgaccgttaa aatctatagg acaatggtct      5640
     tgatcaacaa tatcaatagt taggttaggt atattggatc tattaatgat aggtaaataa      5700
     ataggattta atggttccac aaaaatctgt tcggctggac taacacttaa agcagtttca      5760
     taaagagtat gagattcttt gtttttgtag aaagaacctc ttacaatatt acactcgata      5820
     cgtattgtat taaccttaat tatgttaaca ggtaaatcac tttcatgtaa ttgtcttgct      5880
     ttaagtttcc ttttagaaaa acctaacaat ttaccaatac tatcttcgtg agcgaaatta      5940
     atgtcgtaaa tactaaatat ctcacacttt aatgtgtttt cgttagcctt caatgaaaat      6000
     gtattctgtt tttgagcatc agttgcagat cgtccactaa gaataatttg tatatatttt      6060
     tctatagcag ctatttcata agcacctttc ggaaatgtta tcactttttc ttcagtagtg      6120
     ttcggagcaa aataataaaa tttatttgta ccctcttcta tatttggtat attattgtta      6180
     gtataaaaac cgattaaagc tatagaataa ttcgaatttt cttcaaggtc aatgggtggc      6240
     tcatagtgtt cagacagcgt actttcaaca cctgttaggg agaatgtctt atacatgact      6300
     gaataaaata catgattatc tcatctttta ttatgtaaaa acatcaaaca taaatgtccg      6360
     caattatatg ataaaaattg ataacgatca tgattaaagt aaatattaca atttcctaag      6420
     tatcgtacta attctagagg tggctttaga tttccataac tatcaaaata atcaacctgt      6480
     ttatttgttt ttctataaca aacccaatga gttccggatc cttttttaga gtccaaatta      6540
     atgatagcac attctgtctt atcaggtttc atatgaatta attcatctct cataaaaacg      6600
     cctttaaatt tgggtagttt taataattta gcatatcttc ttaaatcatt atcagttagt      6660
     gccctattag gcagttttat tggtagtttt ttggaaattt acgtaaatac aatccataac      6720
     ctcgtggttg ctttcgaaga tataaaccac ttcccgcctt cccgatagcg atatcttcca      6780
     gtactttatt atgacgttta ttctcatcta atttctgttt cgctgcttta gcatcattta      6840
     cagctttagt tatagcagca gcacctccgc ccatagcccc taaggcacta agtcctccaa      6900
     aaattaatgg taacaatggt aaaaatcctc ctgtttttat aggtataata cgaggaattt      6960
     ttatacgctt acgacctcca gattttctaa ctgctatacg agcagctgat aatgcagatt      7020
     ttatattatc atatccctta ttttctaaat ttgataaaag agctttatga aaaggttgtt      7080
     gttttttctg tgtcctcttt ctagatttct ttgtcttcct tttcgatttt ttcctttgga      7140
     ttcccatacc taatttcctt ttgactttca ttgcgttagt tacaaaccag gcacttgctt      7200
     tttcaccaaa tgaagcgtct ttagacttaa cacgtgacca tgcactatct tctaaaattc      7260
     gatccgcttg atgtctatct tttaaatcgt tggaattagc gtaagctata tcgtgcgttt      7320
     tacaaaagct gtcaagcttg tttattccag gatcacctcg ttctaaccgt ttcttaagtt      7380
     ttgtaccagg tccgcaatat tgatatcctg gtaaatgtaa ttcaaaaggt aatttattga      7440
     ttgcagtatt taatagtcct tcccctttga aagacaacat ttaactgaac ttttttccct      7500
     atataaacct tcttataaat gtttttaatt tagtatgaaa atgaaagtgt taaagcaaaa      7560
     attacaatta cctatcataa atcatgatta taataatgtt gataataaac ataaaatgtc      7620
     tcatcgacat ggtacacttt tacccgaatc aatacgttgt ataatttgtg gaccttctgg      7680
     tggaggaaaa actaacatat tattgtcttt attgtttgat cccaacggat tgaaatttga      7740
     aaacatatat atttattgta aatcattata tcaaccgaag tataaactgc ttagtgatgt      7800
     gctacaaaaa attaaaggaa tggaatataa ccagtatgaa cataatgaag acgtgctaga      7860
     tccaaaagat gcaaaaaata actctatttt tatatttgat gatgtcataa tgtgtaatca      7920
     agctaagata agggattact tttgcatggg ccggcataaa aatattgata gtttctatct      7980
     ctgtcaaaca tatacaaaaa taccgaaaca tttaattcga gataatgcaa atttattggt      8040
     aatattaaaa caagatctgt taaatttaaa acatgtatat gaagatcatg ttggtgctga      8100
     tatgaaattc gaacaattct gtgaaatatg tcaggaatgt tggaaaaacc aatatggttt      8160
     tttggttata tgtaaagata atgaattaaa taagggtcga tatagaaaag ggtttgatca      8220
     ttttattcaa gtgtagagtg atatctattt gagaacgttt ccagaccggt taatatcagt      8280
     ttcacagcgg ttagtatcgg tgcgatatcg gttaataccg gttccaaagc ggttagtatc      8340
     ggttagatac cggttagaga ccggttaata tcggtctcag accggttagt atcggtgtga      8400
     tattggttaa taccggttcc agagcggtta ttatcggata gagaccggtt aatatcggtt      8460
     tcagaccggt taatgtctgt taaaaagcag ttcctgatcg gtttgagatc ggttaatatc      8520
     agtttgagac ccgttataat agcagtcgaa taagaagtta tataaacaat aattctgatt      8580
     tgttcggtta gtttataaca ttaagcggta atgatgggta ccaaaccaga tcaaaacctt      8640
     aaaagacata tattaaaagc agctgattca attcgaaaga agtataaagc cataaagtta      8700
     aacagcagtg aagcggatga gtcaattaaa aagctttttc agcctgttat aaatccttta      8760
     gaagaaattt caataaaatt ggagaagcaa tctccaccac cacagcaaca acaacaaaaa      8820
     caacacaaaa gaccaaaaca tcatattcaa aagcaaagga aacaatttct taaactacca      8880
     aaaaaagaaa agattaaaca agaacttgaa ctaccagttg aagaaacata tgaacctagt      8940
     acatcactgc gacaaccaga agaaatatat gagtcattac cagaaataaa agaagaagat      9000
     gaagaaacca aatctgacac tatggatgat ttaattaata gcagacatat tttagatgaa      9060
     tttttagaac aatatcctcc agttgcgaga aatgcaatag aagcagtttt agagaaaacc      9120
     agtgatcaga catttggtcc tagatataat tcaaaagaga ataaactatt tatgggtaaa      9180
     catgaattaa taatcagtca aaatggtgat ttaattttag ataatgaatc atttcctggt      9240
     actcctggtt tatacagact aatatttttt aaaaaccctg aagataaata cactcaaatt      9300
     acaaaagagg atcggtcagc atacaaaaaa atacttgaaa tttctaatac acatagaaaa      9360
     aataatgatc ccacaaaaca actaaaaggt catagaggtg taaaatatac tcaaattgtg      9420
     caaccaatgt ttacttcatt tcctaaatct ccgtttattg gtgaaggatt attcactaat      9480
     aaacgtgtag aatatgttta ctgggatgac ataaatgaat tagtgtcacg tctagcatta      9540
     ttacatgcag cgacaaaagc gggtaacaat tcccatctga atgaaatttt atcaatagaa      9600
     gaagaattaa aggaatgtgg tgtaatatat taggcttaag tttttttctg gttaatcctc      9660
     agtgttgaaa tgcccattga tctattcgga cgtaaagtgt tatcagcatc aagtgcattt      9720
     tttaaatcta caccatcacc ttttgttttc actgctgatg gtgaccttga tttaaaacat      9780
     catagaatct gtaacattaa tgatccaaca gaagacaaag attgtgcgaa taaggtatat      9840
     attgatttag taagtaaaca aatataccaa aagatggaag gagtaatagc tgctttaacg      9900
     gatttaaata ataatgttca taaagcagat gctatatgga tggataaatt taatcagtta      9960
     aacttaacca tgaatgttaa gtacaaaata cttgatgaaa aaattgataa tataattgct     10020
     acaattcctc acacgattga atcagaattg cataacaaac atttaagtat aaattatgaa     10080
     atcgataaca agtggaaaaa atttatgaat aattcaaatg agataaccag acgaataaaa     10140
     aaacttgaag aacgctttga aggaatcgat agtattaaga taaaaccaga aaccatttcc     10200
     aaacgttcta aagcaggtga tacagatcaa cttgaaaatg tacctatatc aaagaaaagg     10260
     aaagtaacag attcatatga aaatagtgaa agatagaacc catgcctcat aataaaaaca     10320
     agtgtcctcc aggtcaaatg tcagatcgtc atggaaattg tagagaagtg taccgtaaat     10380
     aagcaatggt tcgactaaag caagttagtg atgtaaagca aaaattggta aacgagatat     10440
     ttaaacctgc acgcaggaat tttaaacgaa gacgtactat aattaaagga ttggatgatt     10500
     tatggcaagt agatttagca gaaatgcaaa atttatctta tcataataat ggatttaaat     10560
     atattttagt cgtaatcgac tgtttttcta aatttttatg gaccagacca ctgaaatcga     10620
     aatcagctaa tgaggttagc agagctatgg aatcaatact gaagaatgaa aaagaacgaa     10680
     taccaaagaa tttacagtca gatcaaggaa aggaatttta taataccact tttcaggatt     10740
     tgatgagacg ttataatatt aatcactata gtacgtacag cgttaaaaaa gcagcaattg     10800
     ctgaacgagt tatacgtact ttaaaatcca aaatttatcg atattttacg ttatttgcga     10860
     cacataaatg gataaataaa ttgcaagaga taaccaaaaa ttataatact acaatacatc     10920
     gaacaacagg aaggaaaccc acagagataa acgcttcgaa tcaaggagac ataacagcat     10980
     atgatcatct aaagattgtt gataaaaaca gaaaaaaatt taaagtcgga gatttcgtaa     11040
     gaattagcaa agaaaagatg ttatttgaaa aaggatatac acccaattgg tcaacggaaa     11100
     tttttaaaat cagtaagatt aatctaacca atcctgtaac atttctgcta gaagataaag     11160
     aaggtcaacc aatcaaagga gctttttata tttgggaatt atcaaaaact caatatcctg     11220
     acgtctattt agttgagaaa gtgattcgac gtaaaggaac taaattattt gtgaaatggt     11280
     taggtttacc agataatcag aatagttgga ttgaaatgaa agatattacc taataaataa     11340
     gaaatatata tacgatataa ttatttaacg tctaatttag ttccatttaa gatggcaacg     11400
     agtgtagaac ctgttataaa aaaagtgctg cattttgaaa aaaccataag cgatattcga     11460
     ttactaatga aactggaact actgaaatta ggaccgtgcc agttgatgga tatatttcat     11520
     aaattaccgg aaacatatca acaagatcat gatataaagc tgaatctacc atgtttacaa     11580
     cattattata acagttttga cgaagatcag tttgatggtc ctccttcatc aataaataat     11640
     tgtgtttcgt gtattttaga tgatacagga agccaacaac aacaacaaca acaacaacaa     11700
     caacaacaac aacccactgc gtttcaagtg taatgcctct tttgaactca tcactcatct     11760
     tgtttgttac tcttatacaa aatgtgttgt acgtgcaaaa accgttagat gttgtagata     11820
     tgtacatcgt cttcactagt gaaagtccta acaacacaag atggtctcct ctctggaaaa     11880
     gtttattttt caacgatgtt gattaccaat ggaagaagat gaatctgggt tatttgagca     11940
     atactgcaat agaaatattt aaatatgaaa atgtttctat agcaaactct gtaatatatt     12000
     ttaaattaag actagttttt accaatagta attatattga tactgactgg aagagactta     12060
     tacttaatga tcatgatgta gtttcaataa aaaattgttt taatcatgtt cctacctttt     12120
     tagcaatgtt tggaattgtt tgtacatgtt ggatcgtttt tatgatgttc atagcgttag     12180
     gtttggctta aaaactgcaa ttaaaaattt atttaggtgt atgactttgt tagtttaagt     12240
     atgtagtttg ttttatgtct aataaaaaat aatattcatt ctgattattt ttgttatcat     12300
     atttcctgtc taacgttttt ttccttaaaa acgttaaatt tttatcagtt atattttgaa     12360
     ttttttgaat ttttacgtaa ggaaccacaa tatccggttg caaagtttat ggaatataaa     12420
     atcatatcgc atcaatgatt aattcatttc tacttcgact gtccgtgtat gaaagtaatc     12480
     atgttcaagt gctctcaatg cgataacaag tttactcgca aagatgcttt aacacgtcat     12540
     gtaaaaaaac atagtaagta aatacatttt acgttataga aattgtttta attaagagca     12600
     tttttaaggt gataaattat ctaaactcac ttgcaccgga tgtaaaacgt catttacgag     12660
     atttgataac tataggcgtc atattacaaa ttcatcattg tgttcaatgg attcggatga     12720
     tatgactcct aaaaaagccc gcctgacaac tagaacacct ttacaaggta tttttgtaaa     12780
     tattctttat attattatta ttataacttg tttttgtttt tagaagttac tactaacgct     12840
     ccatcatgtt catttcatca attttgtgaa atatgcaata gtcactacag aggatccaga     12900
     ttaaaccatt tacgttcttt aaaacataaa agtgtcatct ccgccaaaat taatgatgat     12960
     gatgatttcg ttgaagaata tcaagttgcc ttcaaatcaa gaattacctc ataccgattg     13020
     aaaaattcac aactagatga cttggaagtg tgcaattttt ttgaaagaaa tcaagataaa     13080
     cttatcactt taataactag aaaactgaga gaatttaacc aacttaaaat taatttcgaa     13140
     ctttttgcta aatatatttt accttctaaa gacattatcg aaatcaaatc attcaacact     13200
     aaaaatatca tcatttcaat atcgacaaat attaaggtag aactggaaga aatatgtggc     13260
     gtcataaaaa acaaaatgag tgaattcttg gaaaaagata gtggtaagta atatcaattt     13320
     tatttataaa catattattg tattaaattt tttaggttgg attttaatgg aaattttgtt     13380
     tttggaactt aatatcaaca aattcaatcc actacgtgca tcaacatata taccattacc     13440
     gaaggacata gcgaagcgga gagcggttat caatattcat aatgatgata atgaatgttt     13500
     caaatggtct gttttggcac accttcattc aactgaagta aatgttaatc gacatcgagt     13560
     tgatgcttat cgtgagtttg aagaggaatt agattttaca gatatttcat ttccggttaa     13620
     attaactgat atttttaaat ttgaagcact taataatatt agtgtaaatg tctatggaac     13680
     agagcagcgt tttgatcatg aaaaaggtaa atgggtatca gatattatag gtccctttta     13740
     tttaacttct aagaaacgag acattcatgt aaatttatta cttatcgtag acgatgaaag     13800
     aatgatcaaa cattactgtc tgataagcaa catttctcga ttaataagtt cacaactttc     13860
     caaacataat catgctaaat ttatatgtaa cggttgtcta ttattttttt cgagtgaaca     13920
     aaaattagtt aaacatcgta agtatgcttg taatgaagtt gtcactacat taccaacttc     13980
     tgatctgatt ataaataaat ttggtaaaga agtgcctggt aatgaattaa catttcaaaa     14040
     ttttgataaa tctcttaaag ttccttttgt attttatttc gattttgaat ctattttaaa     14100
     acctttacgc aatgataatt cagccgataa tatccgtaca attgttacac atttacatga     14160
     accatatagt ttcggatatt acataaaatg tgcatataat gataatttat caatttatcg     14220
     gacttatcga ggaaaagatg ctcctaaaat ttttgtgaaa tggttgcaag atgatgtaaa     14280
     tagactttat cacgatcacc tcaaacatat cgtaccactt gaaatgactc cgttagatga     14340
     attggttttt caaatatcta cccattgtca tttatgtaaa gaacctttca aaacagatta     14400
     cggaagtcta aattgtgata gagttcgtaa tcattgtcac ttaacaggtg aatttttagg     14460
     acctgcacat tctatttgta atttaaatta taagattcca aaatatatcc ctgttttttg     14520
     tcataattta actaattatg atagtcattt atttattaaa gctttagcaa cagaaaagac     14580
     catcattaat tgcattgctc aaactaaaga aaagtatatt acattttcaa aaaaaatttt     14640
     agttgataag gtcatgaaca cgactacaaa tacagttgac aatattttta taacgcttag     14700
     attcgtagat tcgttccgtt tcctttcttt ttcattagat aaattatctc agactttaac     14760
     ttctaatgaa tgtctaacca ttcggaaaca ctttccggac gataaccaat ttaatttgat     14820
     aagacaaaaa ggtgtttttc catattcata tttggattgt tttaataagt tagatgatac     14880
     cagtttacca ttgattcaac aattttatga taatcttaat aaaactgata tcagtgaaca     14940
     tgattatgag cgagcacagg aagtctggaa tctatttgat tgcaaaacgt taggtgatta     15000
     ttccgacatt tatttaaagt ctgatgtttt gttactaaca gacatttttg aaaatttcag     15060
     aaaggtttgt ctcaaaattt atgaactaga tccagctcat tacttaacag caccttcatt     15120
     aggctgggat gctatgttaa aaatgactgg aattaaattc gaattgttaa ctgatataga     15180
     catggtacat ttctttcgaa aatctattag aggaggactt tgtcaatgtt caaaacgtaa     15240
     agcagtagca aataataagt ttttatcaaa tcatgatcct tctaaaccaa cttcttttat     15300
     aatgtacctt gatgcaacca acttgtatgg agcagcaatg tctgaatatt taccttatag     15360
     cggttttcga tgggaagatc ctaatgaatt caatgataac ctaattctca atttgacaga     15420
     taacgctgat gtaggttata tattcgaagt tgatttagaa tatccttctg aattacataa     15480
     tcttcacaac gatttaccat tttgtcctga aaaatttatt cctccctcta gtaaaactga     15540
     gaaactttgc gcaaccttga acaataaagt acactatgtt ttacattatc gaaatttaag     15600
     acaagctata caaggtggtt taaaattaat taatattcac cgtgttttaa gttttaatca     15660
     atcaccatgg ttgaaaacat atattgattt aaatacagaa atgcgtaaca aatcaaaaaa     15720
     cgcgttagaa aaagatgtat ttaaattaat gaataattca gtttttggta aaaccatgga     15780
     atcaattgat aaaagagtaa acgtgaaatt ggtaacatca tggaataata taggtagaaa     15840
     accaggtgct gaaagtttaa ttgcacgacc aaattttaaa aattcatcta tctttacacc     15900
     aaattttgta gctattcaat tagagaacga aaaagttttc tacaataaac ctctgtatgt     15960
     aggttttact attctagata tcagtaaaac tattatgtat gatttttatt ataatttcat     16020
     aaaacttaaa tacggtaaca atgcaacgct tttgtatacc gatactgata gtttagtaat     16080
     tgaaattttt tgtgaaaata tttatgatga tattaaatct aatatagagc gttttgatac     16140
     ttcaaattat aaagcagaaa atattcatgg aatacctgta tcgtcttctg tcatcgggaa     16200
     gatgaaagat gaatataaag gacgtgtaat atcagaattt ttaggaacag gtgctaaagc     16260
     atattgtgtg gatgttgaag gtgaattatc taaaaaagct aagggtatta aacacaatgt     16320
     aattacaagt gaattacata aaattgacta ccaaaacgca gttactgttc caaacactga     16380
     aattattaaa gaaatgaata tctttcgttc gaagcttcat aacatttaca cagaattaaa     16440
     gaaaaaaatt gctttatctt tcaaagatga taaacgttac atcttaaaca attctgaagg     16500
     tagaacatta tcttggggtc ataaaaatat tcttcctcaa actcaggaat aatatttaat     16560
     ttgtattgta gttattgtat tataatgttt atgtattata atatgtatgt atgtatgtac     16620
     ttatatttag atgtaataaa caattaaagt aatttattgt ttttattatt atccattaac     16680
     caaatagctt atgtgaattt gtttcaggtt tccaaaatag acagcactat ccactctacc     16740
     tacctgaggt tcgactcccc atggaaggaa caacaacaac aacaactttt tttgcattat     16800
     attttaaaca aataacaaaa taaacttggt gcgcaacaga caagttaggc aaacaacatt     16860
     acaaaaataa aaaactacat atactaggtt ttttttcctt atcgataaaa taatgacttt     16920
     cctttattag ttattagtga caagcgcgat gattttctga tattttgctt aactcaatac     16980
     agcatgtatt gtatatatac ttcatgtatt cacaattgca catttcaaaa atcatatatt     17040
     caaaatttca caaccccaaa aaccaaaaat ttcacaaccc caaaaagcta ctactactac     17100
     tactactact acttgttttc ttggttgcat attcgcaaac gggcgggggg tgtgtttaaa     17160
     aaaaaaaatg gaggccagcg ccatctttga ttgacggctg cgctgacggc agcgccatct     17220
     agcgaaaagt ttgcagaccg tggcgccatc taacgtgaga atttaggcgg aatttgtgac     17280
     gacatcggcg ctaccaacat tacacccaat attaattttt aaataaatta aaattttggc     17340
     gccatttttt ttaacaaaca aacatggccg actaatttca aatattaatt ttgaaataat     17400
     ttaaatttgg cgccaattta ccattaaaca aaaatgaccg ccgccgactt tcaaacttcc     17460
     aagatggcga cgattattat tattattatt attattatac tacataaata tatttgcatc     17520
     atcacaaatg gcgtcagtcg gccgcaggcc ggctgaccag ctggtcgcag gccagcgagc     17580
     tgcgattacg cgcttgcgtc tgcggctgac tgacacaatt ttcacacatg cgcagtagag     17640
     ggaggtggag gtggtttttg aaccggctat ctctatctac t                         17681
//
ID   Polinton-4_CoFl repbase;    DNA;    INV; 18070 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-18070
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2104-2104 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 185-bp TIRs. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           1213..410
FT                 /product="Polinton-4_CoFl_1p"
FT                 /translation="MDLFKQKQKYFLTRDSDKPGSDFINFDENTRDSESAI
FT                 ISTAKVLLHSYPLNKTATKKIVVGLHYNIHRQCFEPLLQFSKCQFTGGVII
FT                 NAYVWSELKDHFAFINDYFTNKNTRQMDRIQVGNIELVFTSSYGKKSVIFD
FT                 KNEFSDGEDADRKKKTYDSTIVMQHCTFLGLAQSVICVDERLRQIESVATL
FT                 VTKCKEFIVNELIVLLESMTETNKTTVSNLEKLIKEHFSYLRKNVKGNLYS
FT                 TIDNFFLENNFDMVFLELTTYCLEIF*"
FT   CDS           8744..9367
FT                 /product="Polinton-4_CoFl_3p"
FT                 /translation="MDLVVDIQGFYDSDRRFIPKEVAVVSIQANVIGHWLI
FT                 KPPRPFNDLPYDVKKYNNHRTLEVHGIEWFDGDTTINYLKYSLITLTKNLK
FT                 RIYMYGNDGAEFISSILAREVHDLSQIHTSFKMYENKKIGLPICLTHAQKH
FT                 FKDKQSFCALYRACLLKEWIIKTESLKKASALDSDAYYNAYQKLKRQRSLR
FT                 PSPGCPDVVDCVGDNKK*"
FT   CDS           16929..17480
FT                 /product="Polinton-4_CoFl_5p"
FT                 /translation="MEEYLEYKDIQDYGRRLEMSIEEIGRKRKWNDFVSKW
FT                 LKFEEMHRCDVRVKFPYEDRYCNNLSYGSEAICSKHKTIRGSLCAAYHLTT
FT                 KAIEAGVPEDHMGMVAFFELLLRKQYAYKFNLIQSDIGHQTWEVGLKKRSR
FT                 HLRLRDGFIEEINCDDKKCEEGCREVQGRFTKPGKLVMYRRNRR*"
FT   CDS           join(2185..2506,2597..2740,2826..2912,2997..6686,
FT                 7070..7543,7979..8178)
FT                 /product="Polinton-4_CoFl_2p"
FT                 /note="DNA polymerase B."
FT                 /translation="MEASMVSALFEVVRSCVRYATIVSEDARKVYTDKWFS
FT                 NVLPTYSVNELIGVLQELFTIYLAGVHAVALYPLYLIRSPIAIQAVVECLP
FT                 SNARNIGMLKEMYKTYDKLVANICFEDSENLSNVDGALKRKQEDPLDDGMP
FT                 GPSGAGLSYKKIKISSESETDRQQEEVSEPMPGPSGLTMMRYTPADRVDGI
FT                 DSAYIEQQQEQPPYHQHGRGVASVAVQTEDEPDTSIGTKYITLESDKKKFV
FT                 KSFKTTCRAIKFKITNPSDAANTLDWIKNAFQELITVIKKNYSSNYLVGID
FT                 LHSDALTEGSAGIYYKLIDQINFQDIWGLCEKIEQSKRIIDIAKTLVVEVT
FT                 YVKLPQGWGAQEDIINSLSKKGVLVINNRDNLCLARALVCGKVLTAKNCSS
FT                 DWSQQWKKIKTENEQKSEAIKLMQECDIEINNEQGYGYVEFSKFQRYFEQH
FT                 NICIRIFEYESFGDDTALIYDGANDGAVYCTSFINIMYYEDIGHYNLIKNL
FT                 LTVRSMYFCATCNKNYKRVGEHVCKSVCPACNGSPNCNNTNDTLKKSCTDC
FT                 RREFYGDQCYNNHKIKGSFARTKNHKRATRSICDVVKICNSCAKLINLAKG
FT                 KHECGKKYCKECKSVHKFNTLCSMQPITLKNNLNAKKNCFIFYDFETRQDK
FT                 ELHDTANTCVHIPILCVLQVRCDACIDEIEENPHAICPFCGIKQIIFEGEE
FT                 CLKSFVDFAVRFESKTFASFICIAHNSKAFDGQFILKYIVDNKKGTPEIIL
FT                 NGRNIILMSLGKTKFIDSLNYLPMKLADLPKTFSLAGNIKKGYFPHLFVTS
FT                 DKNYKGPYPDSRSYAPDSMNTRDRAKFLEWYHKVTSDVNAQFDFKKELVEY
FT                 CVQDVKILREACTAFRKIFIQVGKVDPFVESVTIASACSVLYRKNFLKKDT
FT                 IGIIPATGYTHAGQFSKKCIHWLLWEEKVRNVEIIHAGRSREYRSIEGLLV
FT                 DGYLKPQVETMNPKGTVFQFHGCYFHGCIRCFPNDRYQKLNNNETFTERYE
FT                 NTMKTSFKIKEYGYEVIEMWEHDFDKFIKNNNEYLDYIKNHPIAEICTINP
FT                 RDAFYGGRTGNIVTHYTIKNNERIKYLDVCSLYPYICKTGTFPLKHPKIYT
FT                 GNDCLELSGKNFENFQEKVEGLVKCTILPPRNLFHPILPTKMNSRLLFGLC
FT                 RTCMVTSSQEECKHDSVSDRALSGTWVSVEIKKALELGYKLLKINVIWQYE
FT                 VAKYDQTSQSGGLFTEYIDTFLKIKQEASGWPSTVKTEEDKLEYINNYEHK
FT                 EGIKLDICNIKKNSGLRSVAKLCLNSFWGKFGQRGNLPQTSIVNDYKELLK
FT                 ILCDSEKYVENCLPANDSVMYVTWRYKEEVALSSPCTNVAVAAYTTAQARL
FT                 KLYSYLEKLDRRVLYYDTDSVIFTSNNENVSEYQPPTGSLLGQLTDELEVY
FT                 DTVRAIKKVCADGNCDCHRYCCRVPTCKYYPPYKSSLKGLAWHSLLHTLVK
FT                 LKADGEVKAYHEMYENLLKLDFIEMTFEYVRVLGYFNESSVIWRLQKPVEN
FT                 LEPNDQLNTVPYNRLLDAHIFLNIRTAELLHLIDTNRIIRIQFHKVRRLDE
FT                 EQRDDGYFQASSIINYHGSTEYNDNIQEFENITIAEILFIINTNKITDIYV
FT                 IAIQDDNCQNDWCASVGMHL*"
FT   CDS           join(10737..11028,11351..11940,12016..13026,
FT                 13181..13876,13937..14419,14578..15816)
FT                 /product="Polinton-4_CoFl_4p"
FT                 /note="integrase."
FT                 /translation="MKPSTPKNGRFKQPPRRVDEAREAPFERKYIAILEAL
FT                 AHLNREQRVALLKKGDKKLIDCLCECVLNILKGVVSLKNSQKKIFLKFKSV
FT                 LRQLIAKSQDSNSYSNEYDKLKEYLRVLHRYLYFIDEKREPMQIAENEVKN
FT                 ITTTTDDYGMSEETIVSTVPKVYQQKSMLLLKHLKGYKNNIKWDSTGTVIY
FT                 KGKKIDGSNIIDLINDAARRRKNVKSVGRKIFAKVLREINTPQELVGNTDL
FT                 LKIVDRDSSSLLLDGTSNIKSLGEDEETFEHETFSSPLEKTVHDNKSNDDK
FT                 HVKQYFTPNHEAAFSGVRNLIRVNKNKISPEKIKEWLQKHDAYTLHKSIRR
FT                 KFPRLFYDVNARDELWEADLIQLTSLKNYNDGVSFILIVIDVLSKFVWVQP
FT                 LKDKSCRNVTAGFKKILENSQSRSPFMLQTDRGTEFLGSEFQRFLKDNAIK
FT                 FRVAKNPDVKAAVVERVIRTFKERMYRYFTYKNTYRYVDVLQDLISGYNNT
FT                 PHSTTKLAPSSVTIYNAHIARQNLVNSRQPRTKQRHSQSKYNYKVGDYVRI
FT                 SRDKNVFEKGAVKTWSEEIFKITRILKRQNLHVYELSDLDDEKIEGFFYSQ
FT                 ELNPVRKERVSEQDHKIDKILKTRGKGKNKQHFLPKEIELSGKWEVGISEI
FT                 HVPYTILHVRREEAVISDPGEEKKCFIQHGTYDSVHSLCEEINRKWLEYYH
FT                 KDKKCQQLIYDHRGGFVFIGFPIIGPGRTRTCGKTPAVSTVVKRVIGFEEG
FT                 LTEIERDRAEIRGDYRLLFHGKQPASLSRAVPDQLFIYSNICESSIVGDTF
FT                 APLLKIVNLAAQEINFGSTIVKRYTPPAYVPLLNNRFHTIDIDIRDQFGKP
FT                 ISFEFGTLTVGYHTQHGGGRGVKHVFAGSYRQRGHGLGSFFTGLFRSAMPY
FT                 IVRGARAVGKEALRAGVNIIDDIGESNIPFKHAFKNRINESGKNLKRKATE
FT                 KIVKLMEGSGYNALPYKKRAQSRRRSGGVNNSLNAAEKKKKSRSRKVKRKI
FT                 GTRKKNKKNSKKKKSNRKTALEANRWVHYKPVSSLSDESPIEFVISSQNED
FT                 YIDLAHTMLRVNVKLTPYDKDGDALVAPVNNFLHSIFNQVDVYFNQKLVTP
FT                 PNNAYPYRAYIETLLNYGPAAKSSHLSTNLWETDVAGEMDELPGSKKNSAL
FT                 TKRQEYLKDGKTIDLMGHLHCDVFNQDKLLLNGVEVRLRLIRSKDAFCLMD
FT                 ASTKNYSISITEATLLVRRVKVSPTVLIAHAKTLANTTAKYPITRVEVKSF
FT                 TLHSGISGDCLDNVILGQLPKRIILGFVDNKAFNGDRKMNPFNFQNYSINF
FT                 LSLYVDGVQVPSKPLQPTFTGNTPMYVEAYHTLFSGTGIYYMNEGNSIHRK
FT                 DYPNGYCLFAFDLTPDLSSHFAGHWNLVKNGTVRIEVRFETALTKTINCIL
FT                 YAEFDNILEIDSNRQVVVDFNS*"
XX
SQ   Sequence 18070 BP; 6231 A; 2981 C; 3409 G; 5440 T; 9 other;
     agtagmaagg gtamtatttk tccagacact ctkatagata tatgtcatac ggctggckgc        60
     gagagcgggg gcgtggccgg ggtcctattt tggcagatgc cacgtgatcc tgcgtggsta       120
     gccagtatgc kcggaagagg gcgcgcggtg gccccgcgtm attwaaatat tattaccgac       180
     gctgcctggc cggttaaaaa tttgttttaa ttcttgaccg ctctttgtaa gggttagtat       240
     aaggagcggg tggtgggtgg ggttttttaa ataaattaaa aaatatattt catacatata       300
     ttatataaaa ataaacagaa tgtttaaatg ttttacaata ttattacaat attacaatat       360
     tacaatgtta caacattatt aatcctattt aatttaatat ttatgtcatt taaaaaatct       420
     ctagacagta cgttgttaac tctaaaaata ccatgtcgaa attattttct aaaaagaaat       480
     tatcgatcgt agagtaaaga tttcctttga cattttttcg taaatatgaa aagtgttcct       540
     ttatcagctt ttccaaattt gatacagtgg ttttattcgt ttcagtcata ctttctaata       600
     aaacaattaa ctcgttcact ataaattcct tacacttagt aactaacgtt gctacacttt       660
     cgatttggcg aagtctttca tccacacata tgacagattg agcgagtcct aaaaatgtac       720
     agtgctgcat aacaatagtt gaatcgtacg tttttttttt cctatcagca tcttctccgt       780
     cactgaattc atttttatca aaaataactg atttctttcc gtaagatgat gtgaatacca       840
     actcgatatt ccctacttgt atgcgatcca tctgacgggt gtttttatta gtaaagtaat       900
     catttataaa agcaaaatga tctttaagtt cgctccatac atatgcattt ataattacac       960
     ctcctgtaaa ctgacatttt gaaaactgca acaaaggctc gaaacactga cgatgtatat      1020
     tatagtgaag cccaacgacg atttttttcg tagccgtctt gttgagtgga tacgaatgca      1080
     gtaatacctt tgcagttgat atgatagcac tttcactgtc tcttgtattt tcatcaaaat      1140
     ttatgaaatc ggatcctggc ttgtcactat cacgcgttaa aaaatatttt tgtttctgtt      1200
     tgaatagatc cattttacag atcgatgtaa cgtagtaaaa tttgaatcac tcgtgttgtt      1260
     ttacttcact taaaaattta aagaaataca cgtttgcgaa cagggtgaac gttacctatg      1320
     caaccgtcgt tatcgatacc gtgaagatga ctgacagtct aatagaaagg tgatacttta      1380
     atgctaaaat ttttcatttc tgctgcactc tccctctcaa attttttgtc gatacatgat      1440
     tcataaggat gtcctataga tagtacacca tttatgttta tcacgtacac tgctacggaa      1500
     aaacctgcta aaacatgctt gaacgcgagc tcaaacctat attttgtctt tcttttagtc      1560
     atctgagaag tattcgcgaa caaatgtagg gtttttcctc actctttttc aaaatatgaa      1620
     agagaggaag tgacgacggt ggaaaatatg caattgtccc tcagttgcaa catatttatt      1680
     gtccctcagc tacaataatt ttaatctttt tcaaaacata aagaactata agaaacagcg      1740
     gtgaaagtgc gtgattgtcc ccccggtagt aatatttgac gtcatacctg tagagtttcc      1800
     caggctatga cttgagtgga cctatctgac tgtgtatacc ttttactttt atcataatct      1860
     cgctaaaact tcgaccaaag gggggaaagt atagaagtag ctaaggaaga gaagaaaacg      1920
     taaaagaaaa tcagtcctta tccgacactc ttagccgaat cacatcttgc tgatacgtta      1980
     caataacttt ccgcgttaca attcgttcga ggtcttcctc aatttacttg aaagttaaat      2040
     acagtgtatt tcttgcattt atttaaactt gtttaaattt ttgtaacagt gtgtttttac      2100
     tgtggcgttg ctttagtttt ttggttagct acagaaattt ttcttagttt tttttttgcg      2160
     ttaataaaaa aagtaaaaga aaaaatggaa gcatctatgg tcagtgcttt attcgaggtt      2220
     gtccgttcgt gtgtgcgata cgcgaccatc gtgtcggaag atgcgcgtaa ggtgtacacc      2280
     gacaagtggt ttagtaacgt gctacctaca tactccgtta acgaattaat aggagtatta      2340
     caggagcttt ttaccattta cctggcgggg gtgcacgcgg ttgcgttgta ccctctgtat      2400
     ctaattcgta gtcccatagc catccaagcg gtggtagagt gtctaccgtc taacgctagg      2460
     aacatcggga tgttgaagga aatgtataag acgtacgata aacttggtaa gtaatgtatt      2520
     gtattgtatt ttttcaaagt tttttatact tacaaatttt gcatgatcag taaaattaaa      2580
     cgaaatcctg ttttagttgc caacatatgt tttgaagatt ccgaaaatct ttcaaacgtt      2640
     gatggtgcac ttaagagaaa gcaggaggac cccttggatg atggtatgcc tggaccgtca      2700
     ggggcgggcc tctcttacaa gaagataaaa atatcttcag gtaaattaaa atctttacgt      2760
     acacgtcttt tttctatcat ccattttaac tttcaaaatt atattcattt caaaatatta      2820
     cgtagagagc gaaactgacc gccagcagga ggaggtatcc gaaccgatgc ccggtccgtc      2880
     ggggttaact atgatgcgtt acacccctgc aggtaactaa taaatttaat attcgagttt      2940
     ctcaaacaca atgtataaca ttttaattat aattgtaaca tatttttatt ttacagatag      3000
     agttgatggg attgatagtg cttatatcga acaacagcag gagcaacccc cttatcatca      3060
     acatggaaga ggtgttgcaa gcgtcgccgt gcaaacagag gatgaaccgg acacgtcaat      3120
     aggtacaaaa tatattactt tggaaagcga taaaaaaaaa tttgtaaaat cttttaaaac      3180
     cacttgtcgc gcgataaaat ttaaaattac caacccttcc gatgcagcga atactttaga      3240
     ttggatcaag aacgcttttc aagaacttat aactgttatt aaaaaaaatt actctagtaa      3300
     ttatcttgta gggatagatt tgcactcaga cgcgttgact gagggatcgg cgggtatcta      3360
     ttacaaactt attgatcaaa taaattttca agacatctgg ggtctatgcg aaaaaattga      3420
     acaaagcaaa cgaataatcg acatcgcgaa aactttagta gttgaggtta catacgtcaa      3480
     actccctcaa gggtggggtg cacaggaaga tattataaat agtttgagta aaaaaggcgt      3540
     cttagtgata aataatagag ataatctatg tttagctagg gctcttgtat gtggtaaagt      3600
     tttgactgcg aaaaattgtt cgtcagattg gtcccaacaa tggaaaaaaa ttaaaaccga      3660
     aaatgaacaa aagtcggaag ctattaaatt aatgcaagag tgtgacattg aaataaataa      3720
     cgaacaaggg tatggatatg tagagttttc gaaatttcag cgatattttg aacaacataa      3780
     tatatgtatt cggatatttg aatatgagtc ttttggtgat gacacagctc ttatatacga      3840
     tggtgctaat gacggagcag tatattgcac atcatttata aacatcatgt attatgagga      3900
     catagggcat tataatttaa ttaaaaattt attaaccgta agatcaatgt atttttgtgc      3960
     aacatgcaat aaaaattaca agcgtgtggg tgagcatgtt tgtaaatcgg tttgccctgc      4020
     atgcaatggg tcgccaaatt gtaataacac caacgatacg ttaaaaaaat cttgcactga      4080
     ttgtaggaga gaattttacg gagatcaatg ttataataat cataagataa aagggtcatt      4140
     tgcgcgtaca aaaaatcaca aaagagcgac aagaagcata tgcgatgtag ttaaaatttg      4200
     taattcatgt gccaagctca taaacttagc taaaggtaag catgaatgcg gaaaaaaata      4260
     ttgcaaagag tgtaaaagcg ttcataagtt taacacgctt tgtagtatgc aacctattac      4320
     gttaaagaat aatttaaatg ctaaaaaaaa ttgtttcatt ttttacgact ttgaaacgcg      4380
     acaagataaa gaattacatg atacagccaa cacgtgtgta cacataccga tcctttgcgt      4440
     gctgcaagta cgatgcgatg cgtgtataga cgagatagaa gaaaatcccc acgcgatttg      4500
     tcccttctgt ggtattaaac agattatttt cgagggtgaa gagtgtctaa aaagttttgt      4560
     tgattttgca gtaagatttg aaagtaaaac tttcgcttca tttatctgta tagctcataa      4620
     ctctaaggct tttgatggtc aatttatatt aaaatatatt gtagataata aaaaaggtac      4680
     tcccgagatt attcttaatg ggcgtaatat tattcttatg tcgttaggaa aaactaagtt      4740
     tatagatagt ttaaattact tacccatgaa attggctgat ttacccaaaa cgtttagtct      4800
     tgcaggaaat ataaaaaaag ggtattttcc acatttattc gttacgagcg ataaaaatta      4860
     taaaggtcct tatccagatt ctcgctccta cgcgccagat tctatgaaca cccgcgatcg      4920
     cgcaaagttt ttagaatggt accataaagt aacttcagac gtaaacgcgc agtttgactt      4980
     taaaaaagaa cttgttgagt attgtgtgca agatgttaaa atattacgtg aagcttgcac      5040
     ggcttttcga aaaattttta tacaagtcgg aaaagtagac ccctttgttg aaagcgtgac      5100
     aatagcaagt gcgtgttccg tactatacag aaaaaacttt ttaaaaaaag atacaattgg      5160
     gattattcca gcaactgggt atacacacgc agggcagttt tctaaaaaat gcatccactg      5220
     gcttttgtgg gaagaaaaag taaggaatgt agagatcatc catgcaggta gatcgcgaga      5280
     atatcgttca atagaaggtc ttctcgttga tggttattta aaacctcaag tagaaacaat      5340
     gaatccgaaa ggaaccgtgt ttcagtttca tgggtgttat tttcatggtt gtattcgctg      5400
     ttttcctaac gatcgatatc aaaaattgaa caataatgaa actttcaccg aacgatacga      5460
     aaatactatg aaaacaagtt ttaaaataaa agaatacggt tacgaagtga ttgagatgtg      5520
     ggagcatgat tttgacaaat ttataaaaaa taataacgag tatttagact atataaaaaa      5580
     tcacccaatt gcggaaatct gcactataaa ccctcgagat gctttttacg gtggtcgtac      5640
     agggaatatt gtcacacatt atacgattaa aaataatgaa aggataaaat atttggacgt      5700
     ttgctcacta tacccttaca tttgtaagac aggcacgttt ccacttaaac atccgaaaat      5760
     ttataccggg aatgactgtt tagaattatc aggaaaaaac tttgaaaatt ttcaagaaaa      5820
     agtcgaaggt ttagtaaaat gcacaatttt accgccgcga aatttatttc accctatact      5880
     tccaacaaaa atgaatagtc gtttactttt tggattgtgt cgcacgtgta tggtaacatc      5940
     ctctcaggaa gaatgtaaac acgattcagt gtcagatagg gctttatccg gtacatgggt      6000
     atccgtcgaa ataaagaaag ctctagaact agggtataaa ttattaaaaa ttaatgtcat      6060
     ttggcaatat gaagttgcta aatacgatca gacttctcaa agtggtggtt tatttacaga      6120
     gtatatagac acttttttaa aaattaagca agaagcaagt gggtggccca gtacggttaa      6180
     gacggaagaa gataaattag aatatatcaa taattatgaa cataaagaag gtattaaatt      6240
     agacatctgt aacattaaaa aaaattcggg tctgcgttct gtagcaaaat tatgtttaaa      6300
     ttcgttttgg gggaaattcg gtcaaagggg aaatttacct caaactagta tagttaatga      6360
     ttataaagag ttactaaaga tattatgcga tagtgagaag tatgtagaaa attgtctacc      6420
     ggcgaatgat agtgttatgt atgtaacgtg gcgatataaa gaggaagtgg cgctttcctc      6480
     tccatgtaca aacgttgctg tagctgcata tacgacagct caagcacgtt taaaacttta      6540
     ctcatacttg gaaaaactcg atagaagagt tttgtattat gatacagact cagtaatatt      6600
     tacaagtaat aatgaaaatg tcagtgaata tcaaccacct accggttcgt tattaggaca      6660
     gttaacagat gaattagagg tgtatggtga gggatcgtat atagagacct ttgtttcagg      6720
     aggtcctaaa ttttatgcgt accgtgtgcg tacagctgct ggggggtttc atgatgtatg      6780
     caaagtcaag ggtattaaat taaattacga aaattcatta aaaataaatt tcgattctat      6840
     tgtaactatg gttgatcgat ggaatgaaaa taatgtcgaa tcagataaca caataaaaat      6900
     taaaaatacg atgattagaa agtccgacat acatgaagtg gtaacgcgta atgaagaaaa      6960
     aacatgtgcg atagttttaa aaaagcggcg gtttatttcg gaaaccttat cgtatccttt      7020
     tggttatcag aaaaaataaa ataaaatgaa taaattattt ttgttataga tacagtacgc      7080
     gcaatcaaaa aagtctgtgc tgacggaaat tgtgattgcc atcggtactg ttgtcgtgtg      7140
     ccaacgtgca agtattatcc accctataaa tcctctttaa aaggattagc atggcactcc      7200
     cttttacata cgcttgttaa actcaaagca gatggagaag ttaaagcgta tcacgaaatg      7260
     tacgaaaatc tattaaagct tgattttatt gagatgacct ttgaatatgt aagagtgttg      7320
     gggtatttta acgagtcaag cgtcatatgg aggcttcaaa aacccgttga aaatttggaa      7380
     cccaacgatc agttaaatac tgtaccgtac aatagactat tagatgcgca tattttttta      7440
     aatattagaa cagcagaact cttacatcta atcgatacaa atcgaattat aagaattcag      7500
     tttcataaag ttagacgttt ggatgaagag caacgtgatg acggtgtgat ttataaatgt      7560
     tgcaacggtc atttgataaa aagaacatat tataaccgat ggattgacgt agttaaacat      7620
     agacgtagac taagattatt ggaaaatgaa ttctaaaaaa ttgtttttat gtatatgaaa      7680
     attacttgat taaactaatt tgatactttg atttgtttgt tatagatctc atgcgtacta      7740
     ttcaaacata ctgctcttca tcaaaatgtt catgttttga aaatgtttgt aaatttcctg      7800
     aatgtattcg ttttccaact tttcgccaga cgttgcaagg cttatcgtgg cactcattat      7860
     tccatacgtt gatagaatta aaaaattaaa aagcagatat ccgcttatag acaattgtat      7920
     caaaaaatgt acatcatgaa aacagtttcc gatatcatat ttcatgtaaa atttataggc      7980
     tattttcaag catcgagtat tataaattat catggctcta cagaatataa cgacaatatt      8040
     caagaatttg agaacattac aattgctgaa attttattta taataaatac aaataaaata      8100
     acagatattt atgtaatagc aatacaagat gacaattgtc aaaatgactg gtgtgcgtct      8160
     gttggtatgc acttgtaaaa cacaaataca aaatatattg taataatgat ttttttttaa      8220
     tttttaataa atagagttct tcccaacatg aatgtgaaac tttttttatt tttccctaat      8280
     taatattttc ttataaaatt ttgatattca atatatatta tatactaacg ctgtggaaga      8340
     aaaacgatga tggttatagt tgcgaaaggt gagtcacttg cttctttcat ctcttttact      8400
     catagcatga tcatttttat gatatttttc aaaggggctt gttaagataa aggagagaga      8460
     gagagagata gaaaaaaaaa gatgtcgcta cattctgtaa aaatatatta taagagcatg      8520
     ttataatatg ttttttactc agtatttcat gatgtctgca agtagtaaga aggaaaaggg      8580
     tactatagaa gagaagaccc ctctacttac cagaaaggac gaggagaaaa aaaagaaatc      8640
     gttattttcg tcggttaaaa aattcacgac cgatcgattc tccagcaacc aaaaatcttg      8700
     tccagagaat aaatattata agagagtgta gtagttcacc atcatggatt tggttgtaga      8760
     tatacaaggt ttttatgact ctgacaggcg ttttatacca aaagaagttg ccgtggtatc      8820
     gatacaagca aatgtcatcg gtcattggtt aattaaacca ccccgcccat tcaacgattt      8880
     accttacgat gtaaaaaagt ataataatca ccgcacgcta gaagttcacg gtatagagtg      8940
     gtttgacgga gataccacaa taaattattt aaaatatagt cttattacgc ttactaaaaa      9000
     tctcaagaga atttacatgt atggtaacga tggagccgag tttataagtt caatactagc      9060
     acgtgaggtt cacgacttat cgcaaattca tacctcattc aaaatgtatg aaaataaaaa      9120
     aattggttta ccaatttgtc taacgcatgc gcaaaaacat ttcaaagaca aacagtcatt      9180
     ttgtgcactg tatagagcat gtttgttaaa agaatggatc atcaagactg aatctctaaa      9240
     aaaagcatca gcgttggata gtgatgcata ttataacgcc taccagaagc ttaaacgtca      9300
     aagatcgcta cgaccatccc ctggatgtcc tgacgttgtg gattgcgtcg gtgataataa      9360
     aaaatgaaac aattatttgt tactgtacgt ttttgaaaaa agttattgca aaataaaatc      9420
     gtcaaactaa tattttggct ttttttagag tggtacccca tccgaaattt tatttttaaa      9480
     aaatcccata cttataaata ttaggtgtaa taaaatatat aaataaaaaa aataaaaaaa      9540
     aataataata tgcaagccct gaagagatca aattgaatca acggtttcat gtcgatgaaa      9600
     ccattaacca actgagctat tcaggacttg catcttccaa aatcagaata aggtagtaca      9660
     actactttgt aagtaataaa agtatacgag tcgttcattt gcgtagttag ataccaatgc      9720
     aggtaatatt tttccggtgc atgctccttc catctaccca agggagtagt tgagagaaga      9780
     agagagtagc gtctgatgtg tacgtagaga caaatcagct gacgctcaca catcgaacca      9840
     acccatgcgt aagatgcata tatatataga atatacatat atacgcttaa gtattagcta      9900
     caaaatcgta ctgttgcacc caccaccaca aagtaggtat gcttttcggt aaagtattta      9960
     acgtactagc ttttcaaaat ataattagta taaaaaatat tgtcataatg gatacccgtt     10020
     ggcaacatcc gtggacaagc atgatttgcg gtccaactgg ttgtggaaaa acagtttttg     10080
     ttaaaagatt tctaaataat atagaacaaa tggcaagcgt tacatttgac cgtattttat     10140
     tttattatgc agagtggcag gatggctata aaagtgagaa ttttttgaaa aacggacgac     10200
     aaattgaatt tcacgagggg ttgccaaaac cttctgatta ttcaaacgat cctcatctta     10260
     aaaaactttt aatcatcgac gatctgatgc gcgaatcgtc gaatcatgtt gtggtagatc     10320
     tttttacaaa agggagtcac cataaaaata ttagtgtaat gtttataacg caaaatattt     10380
     ttcacaagtc aactcattcg cgagacataa gtctgaacgc atcgtatatt gtcgtattta     10440
     aaaatcctcg cgatcgcgcg cagatacaac atttagcgag acagatatat cctgaagatc     10500
     cgaaatttgt gcaagaggcc tatcaagatg caacggctaa aggtcatggt taccttatga     10560
     ttgattgcaa acaggacact ttggatgagt taagatttcg tgcgtgtata ttccccgacg     10620
     acgagtatca atatgtttac ctgccaaaat atgcaacgag tgctttcgcg catttgggtt     10680
     aaattaacag ataaaatagt ttgtagtaac gcatagctct cagttttctt ttgacaatga     10740
     agccatcaac accgaaaaac ggacgtttca aacaaccccc tcgtcgtgta gacgaggctc     10800
     gtgaagctcc ttttgaaaga aagtacattg caatattaga agctctcgct catctcaata     10860
     gagaacagag agttgcatta ttaaaaaaag gagacaaaaa attaatcgac tgcttgtgcg     10920
     agtgtgtttt aaacattctc aaaggtgttg tttctctgaa aaacagtcaa aaaaaaattt     10980
     ttttaaagtt taaaagtgtt ttaagacaat tgattgcgaa aagtcaaggt aaaaattcgt     11040
     ggaaaaaaaa gaggaaaatt atagttcaaa aaggtaacgg ttttttaccg ttaatattac     11100
     aacctattct aagtgaaata ttatcaagaa tattgtaaaa ataataaaat ggaaagaggg     11160
     aaaaaaatga ttttactgtc taaagaccaa ctcgaaagaa taaaaagaga aagcactacc     11220
     gtaggaggaa accccggtcc ttctactcct acagccgcaa ataatttttt cacacattct     11280
     attttacaaa ccacacagac agccggagat aacttgagtc gattagacga ctcgatgaaa     11340
     aaaattctag attcaaattc gtatagcaat gaatacgata aattgaagga atacttgaga     11400
     gttttacaca ggtatttata ctttatcgat gaaaagcgtg agccaatgca gattgctgaa     11460
     aacgaagtta aaaatatcac tactactaca gatgattatg gaatgagcga agaaacgatt     11520
     gtcagtactg tacctaaagt gtaccaacaa aaatctatgc tgcttttaaa acatttaaaa     11580
     ggatacaaaa acaatattaa gtgggatagt acaggtacag taatttataa aggtaaaaaa     11640
     attgatgggt caaatattat cgatttaatt aatgatgctg caaggcgaag gaaaaatgtt     11700
     aaatcggtgg ggagaaaaat ttttgctaaa gtacttcggg agataaacac tcctcaagaa     11760
     ctcgtgggaa atacagacct cttgaaaatc gtagatcgcg acagttcaag cttgctgttg     11820
     gatgggacca gtaatataaa gtcgctcgga gaagacgaag aaacgtttga acacgagact     11880
     ttttcatcac ctttggaaaa aactgtacac gataacaaat ctaatgatga taagcatgta     11940
     gtacattcat ctacaccaaa atcaagcggt gttaaaagct ggttacgata ttaataaata     12000
     atgaatgtgc tagagaaaca atattttacc cctaaccatg aagcagcatt ttctggggtc     12060
     cgcaatttaa taagagtaaa taaaaacaaa atctcccccg agaaaatcaa agagtggctg     12120
     caaaaacatg atgcttatac tttacataaa tctattcggc gaaagtttcc acggttgttt     12180
     tacgatgtta atgctagaga tgaattgtgg gaagcagatc tcattcaact gacgtcatta     12240
     aaaaactaca acgacggagt gtcttttatt ttaattgtaa ttgatgtatt aagcaaattt     12300
     gtatgggtgc aacctttaaa agataaaagt tgccgtaatg taacagcagg ttttaaaaaa     12360
     attcttgaaa atagtcaatc tcgctcgccc tttatgttac aaacggatcg agggactgaa     12420
     tttttaggca gtgaatttca gcgctttttg aaagacaatg ctataaaatt tcgagttgcc     12480
     aaaaaccctg atgttaaagc ggccgtagta gagcgcgtca ttcgaacgtt taaagagcgt     12540
     atgtacagat attttacata caaaaataca taccgttacg tagacgtttt acaagattta     12600
     attagtggtt acaataatac cccccactct acaacaaagt tagcgccaag cagtgtaaca     12660
     atatataacg cacatatagc acgacaaaat ttagtcaatt cgagacaacc tcgaacaaaa     12720
     caacggcaca gtcaaagtaa atataattat aaagtaggtg attatgtacg cataagccgt     12780
     gataaaaatg tgtttgaaaa aggtgcagta aaaacatgga gtgaagagat atttaaaatt     12840
     actcgaattt tgaaaagaca aaatttacat gtatatgagc tcagtgattt agatgatgaa     12900
     aaaattgaag gattttttta ctctcaagaa cttaaccctg ttcgcaaaga gcgtgtctcg     12960
     gagcaagacc ataaaattga caagatcttg aaaacaagag gaaaagggaa aaacaaacaa     13020
     cactttgtta gttgggcagg ataccctgaa aaatttaact cgtggataaa ttcaagcgat     13080
     ttaaaaaaca atgcatcata acgagtttac tgtaactcta cctagcaata gtagtatgat     13140
     atattttccg aacaatacta caacaaattt ttccactcag ttaccgaaag agatcgagct     13200
     tagtggtaaa tgggaggtag gaatttccga gattcacgta ccgtacacta ttttgcatgt     13260
     acgacgagaa gaggcagtaa taagcgatcc tggtgaagaa aaaaagtgtt ttattcagca     13320
     cggcacctac gactctgtac atagtttatg cgaggaaata aatagaaaat ggttggaata     13380
     ctatcataaa gataagaaat gtcagcagct aatttatgat catcgaggcg gatttgtatt     13440
     tattggattt ccaataatag gaccaggacg tacaagaaca tgcggaaaaa ctccggctgt     13500
     atcaactgta gtaaaacgcg ttattgggtt tgaggaagga ctgaccgaga ttgagcgtga     13560
     ccgtgccgaa ataagagggg attacaggct attgtttcac ggtaaacaac cagcaagctt     13620
     atcaagagcg gtacccgatc aactttttat ctattctaat atatgtgaat caagtatagt     13680
     tggtgataca tttgcacccc tgctgaaaat agtaaattta gccgctcaag aaattaattt     13740
     cggaagcaca attgtcaaga gatatactcc accagcctac gtacccctcc tcaataatag     13800
     atttcataca attgatatag atataagaga tcaatttggt aaaccaatat catttgagtt     13860
     tgggacactg accgtggtgt tacattttag gaaagttttc ttttaagcga atcgttacaa     13920
     aatggttttt tacgaggggt atcacacaca gcacgggggc ggaagaggag tcaagcatgt     13980
     gtttgcgggg tcatatagac agagaggaca tggattaggc tcttttttca ctggactatt     14040
     tcggagtgct atgccctaca tagtcagagg tgctcgtgcc gttggaaaag aagctttacg     14100
     agcgggagtg aatataattg acgatatagg ggaaagcaat attccattta aacacgcatt     14160
     caagaatcgg ataaacgaat ctggtaaaaa tttaaaacgt aaagctacag aaaaaattgt     14220
     gaagctgatg gaaggatcgg gatataatgc tttaccatat aagaaaagag cacagtctcg     14280
     gcgtagaagc ggtggtgtaa acaactcgtt aaacgctgca gaaaaaaaga aaaaaagtcg     14340
     ttcgagaaaa gtcaagcgaa aaataggtac gcgtaagaaa aataaaaaaa atagtaagaa     14400
     aaaaaaatca aacagaaagg taaaaaaaag agttgttcgc aaaactaaga gaaaggcagt     14460
     aaaaaataaa aaatcaaaac cagtagatat ttttggataa tcatgtcttt cctgcatagt     14520
     cacacagacc cttgcttgaa gagcgaattg gatttatttt ccgttcctct cacgcagacg     14580
     gcattagaag ctaaccgatg ggtgcattac aaacctgttt cgtcgttaag cgacgagagt     14640
     ccaatagagt tcgttatcag ttctcaaaac gaggattaca tcgacttggc ccatacgatg     14700
     ctcagagtga atgtcaaatt gacaccttac gacaaggatg gggatgcgct tgtagctcca     14760
     gtaaacaatt ttttacactc gatattcaac caagttgacg tatattttaa tcaaaaactc     14820
     gtgactcccc caaataatgc ttacccttac agagcataca ttgaaacgct tttaaattac     14880
     ggccctgcag caaaatcatc gcatttgtca acaaatcttt gggaaacaga tgtcgctggt     14940
     gaaatggacg aattacccgg ctcgaaaaaa aattcagctc ttactaaacg tcaagaatat     15000
     ttaaaagacg gaaagaccat agacttaatg ggtcatttac actgcgacgt attcaatcag     15060
     gataaattat tattaaatgg cgtcgaagtt cgtttacgtc taatacgctc aaaagatgct     15120
     ttttgtctca tggatgcttc aacgaaaaat tattctatca gcattaccga ggctacgctt     15180
     ctcgttcggc gagtgaaagt tagccctaca gttttgatcg cgcacgcaaa aactttggct     15240
     aacactacgg caaagtatcc aattacgcgc gtcgaagtca aatcttttac cttacatagc     15300
     ggtataagcg gtgactgttt ggataacgtt atccttggac aacttccgaa aagaatcatt     15360
     ttaggttttg ttgacaacaa agccttcaac ggggatcgaa agatgaatcc attcaacttt     15420
     caaaattatt ctataaattt tttgtcgtta tacgttgatg gtgtacaagt ccctagtaaa     15480
     ccgctgcaac cgacttttac aggtaacaca cctatgtacg tggaagcata ccatacttta     15540
     ttttcgggca ccgggatcta ctacatgaac gagggaaaca gtattcacag aaaagactat     15600
     cccaatgggt attgcctgtt tgcattcgat cttacacctg atctctcatc acattttgca     15660
     ggtcattgga atttagtaaa aaatggtaca gtacgaatag aggtgcgttt cgagacagct     15720
     ctcacgaaaa ctataaattg cattttgtat gctgaatttg acaacatatt ggaaatagat     15780
     tcaaatcgtc aagtagttgt agatttcaac tcataagaat tcatacatct gttattatgg     15840
     actcgttgca actgcgtaga gctctttgca atatacctgc agcgacggtc ggcgtattcc     15900
     ccgctgacca gttacctttt gtttggacga gaccgtgcgc tctcatagtt aataccgacg     15960
     aaagttccaa acctggctcg cattgggtag ctatatatgt tgatattaaa ggtgatggag     16020
     tgtactttga cagctatggc cttccaccca cgatctctca tcatattgat agactcaaaa     16080
     gaaactgcat tacttaccat tggaatgtac aacagcttca aaatattaat tccaccgttt     16140
     gcggaaatta ctgtatcgat tttttatttt tcatgtgtaa caactattct ttaggcatgt     16200
     tttgttcatt tttttcaaca aatactctta taaatgataa aatagctgta acttttttta     16260
     atcgtataac tagacgtaga aattatagaa ataatcgtat tgtaagcaat acatgtactc     16320
     aaactagtaa atctaagtgc aaccatagaa aagtacatta ttaaaattta tatgtaagct     16380
     taattcgata atgtgagttt ttataaaaaa tatatgtata tgatacattt taagatggtt     16440
     tttattttaa aaacccgcct aaccacccac tcctaataat tgttttacga tgtactttga     16500
     tgaaaatgaa taacttagaa ttatattttt aattttcaaa attttcacac aaaatgttat     16560
     tgagaaacgt aagcatcaag tagacttcct tgactttaac cgatgttcga ctttaagccg     16620
     atgcattttt ccaatccctg tagacttatg agtaatgaag tgtttgctcg aaatgtataa     16680
     gtattccata gctcttgggt ttctctgacc ctacttactc tacactatag gttttagtct     16740
     actttcaaaa ctatcagcca gtggtcgaac aatcggtcaa aatgtttttc gatttggtgc     16800
     tagtttactt tatgtttgtt gcaaaaatcg tgatctattg tcatgagata atagattatg     16860
     ctatctattc aatacaccat gattttaatt ggttgttgat taatatagct agatatttcg     16920
     acgcaaaaat ggaggaatat ctagagtata aggacataca ggactatggt cgccgtctgg     16980
     aaatgtcaat cgaagagatc ggaaggaaaa gaaagtggaa tgattttgtt tccaagtggc     17040
     tcaagttcga ggagatgcac aggtgtgatg tgagagtgaa gtttccatat gaagatcgat     17100
     actgtaataa cttgagttat ggatcggaag caatatgctc gaaacataag accataagag     17160
     gatcactatg tgcagcatat cacctcacta caaaagctat agaagccgga gtacctgagg     17220
     atcatatggg tatggtggca ttttttgagc tgttgctgcg taagcaatac gcttataaat     17280
     ttaacttaat acaatcggac ataggccatc aaacatggga agtcggtttg aagaaacgga     17340
     gtcgccacct ccgtcttcga gacggattta ttgaagaaat aaattgtgac gacaagaaat     17400
     gtgaagaagg gtgtcgtgag gtacagggac gatttaccaa acctggtaag ctcgtcatgt     17460
     atcgaagaaa tcgtcgttag gcttcactat aatatacatc gtcagtgttt cgagcctttg     17520
     ttgcagtttt cattaaagtt aacaacgtac tgtctagaga tttttttaaa tgacataaat     17580
     attaaattaa ataggattaa taatgttgta acattgtaat attgtaataa tattgtaaga     17640
     catttaaaca ttctgtttat ttttatataa tatatgtatg aaatatattt tttaatttat     17700
     ttaaaaaacc ccacccacca ctcgctcctt atactaaccc ttacgaagag cggtcaagaa     17760
     ttagaacaaa tttttgaatt ttgcaacttt taaatcccgt cacgcttacc aatcggcaca     17820
     gttggaactt ggacgcctta attttccccc ctccaaaaaa aaaaaaaaaa attgttaccg     17880
     gccaagcagc gtcggtaata atatttaaat tacgcggggc caccgcgcgc cctcttccgc     17940
     gcatactggc tacccacgca ggatcacgtg gcatctgcca aaataggacc ccggccacgc     18000
     ccccgctctc gccgccagcc gtatgacata tatctatgag agtgtctgga aaaatagtac     18060
     ccttactact                                                            18070
//
ID   Polinton-4_DSuz repbase;    DNA;    INV; 19615 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-19615
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 108-108 (2022).
XX
DR   [1] (Consensus)
XX
CC   98% identical to consensus. 6-bp TSDs.
XX
SQ   Sequence 19615 BP; 7366 A; 3289 C; 3338 G; 5618 T; 4 other;
     agtagggtgt atttgtatgt tctggataaa acgatggtgt atttgtatgc tctggataaa        60
     tttgtattgt atgttctgac tcactgtttc gctggtgcgg gggcgcttat cgcgagcgga       120
     agttgttgtt gtggaagctg ctagggccgc gctcactccc cctcccactc cccctcccag       180
     ttcccctccc acttcccctc ccgcttgccc tcccgcttgt cctggtgctt gaccctctgg       240
     ggggttgcgc tcactccccc tcccacttcc cctcccactt cccctcccac ttcccctccc       300
     acttcccctc cccctccccc tcccctcccc cctccctatt ttattgaaat gtactacata       360
     agtattttat ctctctttct tttcagattt ttttcgtctc gcaaactggt ataaatatga       420
     gatgtatagt actggggtaa ttcagaaagc agaagtcaaa ttcagagcaa gaactcactt       480
     acactatttg aagaatcctt catcatcagc attataagca gcagcagcag cagcaaacat       540
     gtctgacttt ggagaacagt ttaacgagct tggggccgtc tctctacccc caataagagt       600
     gttaaggctc tcccgtttga cacaccgatt gtgatacaga acgctgaagt gaagcagaca       660
     cgcttcggcg ctaaaattat gctcacattt gaagattttg tggtgttctt accagaacgc       720
     tttagtactc tgtcatcgca agctgtggag cacatggcga cggggggcta caagctagtc       780
     aaacttaaat cagaagggga taattatatt ttaaattttt gtaacgaata agaaaaaaat       840
     aaaataaact tttttaatta atatttaaaa caaaacaaaa caaaaacaaa aatgggtgat       900
     gctttacata acaataacaa tcctgggcct agtaacacaa atcctgtcgc tagtgaaata       960
     cgatattgtg atgtctgtaa tctaaatgtt gctaaaatta gttggtcgca tcacttacgc      1020
     accaacttgc ataaacaatt atctggtgcg caaataagtg ataacttgcg gtgtataaga      1080
     agtgcatttc ggaatcgtat tgaaacttat ataatcacaa atccaaataa agaatgcttg      1140
     gatatcaatt tatttcaaca atcaatcaaa gaacaagtga tcactctact ccaagaagct      1200
     caaaaaaaac acgtcaatat caaatttaat tttgaacaat tctgtaatta tgttttgatt      1260
     aaagagagtg aagatcattg tgaaatcaat ctaaagtcat ttcaaacaaa aatgcaagtc      1320
     ttaaatccaa caacgagtca gactgaaaat ctaaatgaaa taatcaaaaa tttaaatgac      1380
     tatataaaaa gtgagatgag cgagtttcaa gaacgagaca gtggttggtc cctaattgaa      1440
     atagttcatt tagaagttaa tataaataaa tatcagctaa taaagggctc gaatttcatt      1500
     ggtttaccaa gagaaatagt aaacagaaaa gcctgcatca acgtgcaaaa tagagacgaa      1560
     tattgtttta aatgggcatt aatatcggct tttgtgaaat taccttgtaa taagaatcta      1620
     cccaatcaat ataaacgtaa aggcatttac aacattggat cggatataat aaatataaat      1680
     aataaatcgt taaattttag tgggttaaaa ttccccacac cggtcgacag cataaaaata      1740
     tttgaagaaa ataatcctga aattagtgta actgtgttgg gtgtagacag cgatgaaaag      1800
     acaattatcg gcccatatta tttaactaat aataaaactg gcaacgtctt acacactata      1860
     tatctactac ttctcgagaa ggatgacaaa tatcactatg cttggattaa aaatatttcc      1920
     aagtaagtat taaattagaa aattaaaaaa taaaaaaatt atatttattt ctttgcttct      1980
     ccattagatt acttcgcaaa caaataacga aaagtacgag gaagattcat ctatgcaatg      2040
     gctgttttct acatttctac gatagcgaca aactggaacg acatattatg gagtgtaata      2100
     gaattataac tgagatgccc acaaatgaaa cggcgacttt aagatttaaa aatttaaaaa      2160
     atcaattaga tgttcctttt gtagcatatg ctgattttga gtgtatttta gaagggatga      2220
     atctgaaaac ttcggataac ataaatttga ttcaaaagca cataccgtat gcatatagtt      2280
     attatataaa gtgttcattt gacaatagtt tggatatata tcgaatatat tatggtgaag      2340
     attgtgcaac acattttgtt gagagcatat ataatgattg tttagtgtta tatcaaaatc      2400
     acttaaatgt aacgataccc ttatatccgc tatcaatgga gcaacaaaaa ataattgact      2460
     tagaacaaaa ttgtagtata tgcggtaatt tattcactga tcaatctaaa agagttctag      2520
     accattgtca cttaacaggc aaatatagag gtgtagcaca taataattgc aatttaaact      2580
     ataaattagc aaaatttttc ccaatatttt tccataatct ctcggcatac gatgctcatt      2640
     tatttgtaaa agaattaatt aaaattcctg gtgatatttc tataattccg ctaaacaaag      2700
     agttttatat ttcgatctca aagaaaattt atataaatcc caatgaaacg ttagaacttc      2760
     gatttttaga ttcatttaga tttatgcctt ccagtttaga cagcttagcc agttatttaa      2820
     aagaagaaaa tctaaccaca ataaagtcat ttttcacgga cccgaacaaa tttcaaatgg      2880
     ttaaacgtaa aggcatattt ccgtatagct atttaaattc agttgaacgc ttgtcagata      2940
     cacaattacc gttgcgcgaa aatttttata accaattaac tgatagacac tgttctgaag      3000
     agagttatca gcacgctcaa aacgtttgga atgccttcga gtgcacaaat ttattagatt      3060
     atttattatt atatttgaag gtagatgtgc tgttgctatg cgatgttttt gagaatttta      3120
     gaacagtatg taaaaaaatc tataatttag atccttgtca atattataca actcctggtc      3180
     tatcgtggga tgctatgttg aagacaacta aaattgaatt agaactactc acagatattg      3240
     atatgtataa ttttataatg aaaggtatta gaggtggtct tgttcaatgt agtaaacgtc      3300
     attctattgc aaataacaaa tatctaaata acgattacga ctgtgagaaa gaatcaaatt      3360
     atattgtata cttagatgtt aataatttat atgggtatgc tatgtcacaa gctattccgt      3420
     ataaaaattt taaatggcta gaagaaacag aagagggaaa ttttgaaaat tttgatttaa      3480
     acacgtgcgt agatgatcaa ccaattggtt atattttaga ggtcgatttg gaatacactg      3540
     aaaacttaca cagccagcac aatgatttac cattttgttc gcagaacaaa aaaaatgaaa      3600
     atatgcaaca atcaaaattg attgcagact tgacaaacaa atataattat ataattcact      3660
     atagaaattt gcagcaatgt cttcgacatg gactgatttt aaagaaaatt catcgaatat      3720
     tacaatttga tcaatctgat tggcttaaaa aatatattga ttgtaacaat catcacagaa      3780
     cattggctgt taatgatttt gaaaagaatt ttttcaaact gctaaacaat gcagtctatg      3840
     gcaagacaat ggagaatgtc gacaagagaa aatcaattag attagtgtcc aggtgggaga      3900
     gtgatggtaa aaaattggga gctagagcac ttatctcaaa atttaatttt aagaatatat      3960
     tgcaattggc cgatgatttc tttgcaattc aaatgaaaaa agtgcatgtt gtctatgata      4020
     agcctgtcta cattggcttc accgttctag aattatcaaa atttaaaatg tacaattttc      4080
     actatgacta tatgaagccg aaatatcaag aaaatataaa tttaatgtat atggatactg      4140
     attcttttat ctatgatatt aagactatag atttttatga tgacattcgt tttgaaattg      4200
     atcagcattt cgatacttca gaatatgata aggataatgt ttttaaatta ccattgataa      4260
     acaaaaaaaa attaggtatg atgaaagatg agtgcagggg ggatataata aaagaattta      4320
     ttggactcag agctaaaatg tattcaatac aagtctctaa tataaataat gctgaaacaa      4380
     cggagatcaa aaaaattaaa ggagtaaagg cgagtgtgac ctcaaaatta actattaacg      4440
     attttcgaga ttgcttgtat aaaaaaaata agcaagttgg aacaatgtac ttatttaaat      4500
     cgaaattaca tcaaatttat acgcaagagt atacaaaagt caccctaaac tatttagatg      4560
     ataagcgcta tataaaagag aataatatag acacacttgc atggggtcac aaagatatag      4620
     cctactaagt taagctaaaa ataaaaaaaa attgtctttt ttkctttata caaatatatt      4680
     acattttatt ttttcgaaat aaaaatttta aacataaatg accacagtta tatgtattga      4740
     atttttgttc atttctatag ttatattcaa tgggtggttt taaatatttc acaatttcaa      4800
     tgggcggttg caaatcacca aaactatcat agtattcttt ataatttcta ttcttgaaat      4860
     atgctaccca atgcgtgcca ctaccgcttt cgttatctaa attaattatc ccacattcgt      4920
     tggtccatgg tttcttgggg agacgatcac gcataaaaac accacgaaag tgtctaaaat      4980
     gctgtttacc aaaatcaatt aaatcaatat cggtaagtgc ttgtttgggt agcatattta      5040
     ttagtttttt ggtgaatatg gcttataaaa tagtccatat cctttcttat aaggtttcag      5100
     gaaaagtcct tttcccatcg caattgattc catatagcgg ttatgacgtg tcgcttcggc      5160
     taattgttct ttaccatttt tgacagcgtt tattgcttta gcaacagcag atccaccact      5220
     agcaagacca ccaactgcac caagtgcagt caatattggt atcaacggta ggaatccccc      5280
     aatttttggt aatggtatca ccctcggaat attggagata ttattcgcta gacctcgtct      5340
     tcgtcctcgt tgtcctcgtt gtcctcgatg aaaactaggt gggattgatt gttgagatat      5400
     ctgaattgct tcatcgatac tcgtaggatt tcttcgtttc aaaattcgct tcgtttgact      5460
     cacaatgctt gcgaatgatt tttttcttgt ttgtcgatga cgtcgacgtt gttttttttt      5520
     attactagct ggtttcctct tacgttgacg tcgatgagat ttgtttttag acatacctag      5580
     accgaattta acttttgttt tcatagcgtt agtcacaaac caagcagcag aacgttcttt      5640
     tagaccgcta tcttttgctt taaaacgttc ccacgctcta tcacctaata tatcatcggc      5700
     ctgatgacga tttttcaggt ctttgaattg tgaatatgca atatcgtgct ctcgacacgc      5760
     tgcatctagc ggattaatcc ctttgtctcc acgtttcaaa cgctctgcaa gttttgtgcc      5820
     tggtccacaa aattgatatc ctggcaaatg aagttcaatt ggtagtttgt taatcaagtt      5880
     gttaacgagt ccactaccaa ttcgatactg atatgaattt aatttatgtt tataatttat      5940
     acgcattatt gcatttcctt tttttttttt tgttttttgt ttatgactat tctgtttcaa      6000
     tgacaatcgt acattaaaca aaaacgaaat atatactcaa atatttatag tattttcatt      6060
     agtagttgta aaaatttgtc caataaaaca acacaacaac aacaacaaca acaacaacaa      6120
     aatgagattt ataaaacaaa ccagacaaat taaagttcga aatgtcgatc aaatttgtgg      6180
     tgagggggat aggagtggaa aaattacaca tagcccattg ttaccgaatt cgatacgcgc      6240
     tctaattgtg gggccatcta attgtggaaa gacaaacgta atgataagtt tgatcgaaag      6300
     tcccaatgga cttaaatttc aaaatatata catttattca aaatcgttgt atcagccaaa      6360
     gtatcaatat ttaatgaaat tgattaaacc aattaagggg atacacatgt tcacgttttc      6420
     agacaaggaa aaagtcgtca gtccagaaag ggctagacca cactcaataa tgatatttga      6480
     tgacgtaatc tgtgataagc aaacagcaat aagagattat ttctgtatgg gtcgccacaa      6540
     acacatagac tccttctatc tatgtcaaac ttatacaaaa ataccaaaac atttaatacg      6600
     tgacaacgct aatttgatta taatttttaa acaagatgaa atgaatatta aacatattta      6660
     caatgatcat gttataggcg atatgacttt taagcaattt ataaaaattt gtgaggaatg      6720
     ctggaagcaa aaatatgaat tcgttctcat aagtaaagat aatgatattg ataaaggacg      6780
     atatagaaaa ggattcgata gttttataca tctataatca tcatcatctc tcgatcagct      6840
     ctggatcagc tcggcatcag ctttggatca gctctgaatc agcttcggat cagctttgga      6900
     tcagcttttg gatcagctat atatatatat atacatatat atatcatata ttttactagt      6960
     aaataattgg tttttaaaca aacaacaaca acaacaacaa ccacagcagc aatggtgaaa      7020
     tcaaaaaata agactaaagt gttggatgat ctgattcaaa ccagattgtt gttgacacag      7080
     aaattgaaga gcatgaagtc gaatgaaatg gatcgaatta atatgctgga aaataccttt      7140
     aaaccaatta caaaaccttt gaatgtgatt gcggaaaatt ttctaaaaaa gaacaagaag      7200
     gcaaacaaat acaacgtcga gaatccgact aacaacaaca acaacaataa taagcgtgaa      7260
     ctgataaaat atgatgatca tcagcatcga ggtcttcaag aaggagaaca acagcagcag      7320
     cagcagcaac aacaacaaca aaaacaacaa caacatgttg aaatgcttaa acacaaaaga      7380
     cgatactctc caaagagggt tatgcgaaga agactagaca acaccgacaa cacaaacaac      7440
     gatttggaga taaaagtgag aaaatttaaa tcctataatg caaacagaag gaaaagaaga      7500
     ccttatcaac gaagaaacat ccagcatgag gatgctgctg ctgctgctgc tgctaatgat      7560
     gatgatgcta atgtgtttga tatggaattt aatcgtccgc aaataacgag ttttccaata      7620
     accaacaaca acaacaacaa caacccaccc gacttgatag atacttccaa cgatatccta      7680
     tcagactata cttcattttt ggatagtcaa agagcaaaat actctaattt attagaaaaa      7740
     aacagtcctg cacacacact aaaacggggg aacgatgatg accacaatgc agtagttagt      7800
     agtagtacat ctgctgctct ccctctccct ctccctcctg ctccccctgc ccccccagct      7860
     ctccccctgc tccccctgcc cccagctctc cctgctgctg ctgctgctgc tgttgatgat      7920
     gatgatgatg attatgattt aaaattaagt ctttttaaaa atctcaaacg taatgctaac      7980
     attgagaatt tatctttagc agcagtccag cctaataaca agagatacaa attacctttt      8040
     aatctgctac aaagagattc tatgcttgaa aaaagtcgta aggtcaatgg tcccaaattt      8100
     aatagattta aaaaaacagc acaggcatcg tcatcgaaca ttataaattt tataccgaga      8160
     tcatacacac acacacaaaa aaaacgaagt gctcacacag aaaatttacc tctgcctcag      8220
     tcttcttctt cttcttcctc taataaaaga ttaaaattaa tcgaaaaaag agattctatg      8280
     cttgagaaaa gttttttgat aaatggaccc agatatccaa gatataacaa gacaaaacaa      8340
     cagccacaac aacaacaaca acaacaacaa cagcaacaaa acaacaacaa tgtgatcaaa      8400
     aaggaaaaac aaattgcaat caagagaaaa gtttcgatca agaaatcacc gtttttgcat      8460
     aatattcagc tcttaaaaag tcaaaaacaa ttggacatgt tgtatggtct gaatataaaa      8520
     gaaaatggtg aatggtattt tgccaatagt aaattgaaat ataataataa taacacaatt      8580
     attattgata aggaaaaatg gaaattgact cctggtctat ttcaattgtt atttcacacg      8640
     aagcccgcgc attattcaaa tctggacttg aaaaattatc gagatattct cttaagaaca      8700
     aacgcacaca aacgaaaata tcagaatagt tcacaagtta aggggtctaa atcatttaag      8760
     tatcagcata ttataaaaaa tctattcaaa ccgaaaacac aacttattgg taaaggtttg      8820
     cttacaacac aaacagcagc agcagcagca gcaacaacaa aatcttactc caaggaggat      8880
     agaggataca agtattggga tgatccgaat gaattaatcg agagattacg attactatta      8940
     gcatccgaga gtgctggaaa taccaatcac aaaaacgaaa ttatatccat tattgaagag      9000
     cttagagagg caaatataat aaaatgaatc agattaataa atttggtgaa agcttgtcgt      9060
     ccggaggagt aggaggagga ggaggaggag taggaggagc aagtctaaaa aaatatattt      9120
     taaatcgaca agagaaaacg gatattgatt taaacagctt gagacagagc ataaatattt      9180
     taaaaagcaa aataattaca ttggaaacaa accttcaatc agaggtcagt gaaagtgcga      9240
     atcttataaa attagctcta gaggactact ctcaagatat ttatactaag tatatagagc      9300
     gattagaaga aaatattcaa cggcttgagg acgttctctt taaattactc tctacacagc      9360
     tacctacgga tgaggtgaaa aaaattaaag tacagttccc cattgttgtt aaatatattg      9420
     acaataaaat aaaacaaaat gagtgacaac aacaacaaca acaataactt gaatgcggat      9480
     aaaagacaac tcaccgaaga gttgcataga caaggacgaa aaaattttat cagacgacgt      9540
     gtgataatga aggggataga tgatttatgg caagccgatt tagttgaaat gataccctat      9600
     cagttatata ataagggata tcgttatctt ttaactgtta ttgacacgtt ttcgaagcaa      9660
     gcatgggctg ttgctattaa aaacaaaaca ggagacagcg tcacaaagag tatgaaaagc      9720
     attttcgatg atgcacaaag aaaaccgaaa aacttacaaa cagatgatgg taaagaattt      9780
     ttcaataaga catttcaaaa tctgatgaaa ttaaatcata ttaatcatta ttcaacgtat      9840
     agtattttaa aagccagcat cgttgaacga tttaatagaa ccatcaaaaa tatgatgtgg      9900
     aaagagttca gctatcaagg tagctacaaa tggattaata tctataaggc attgattgct      9960
     aaatataata acacatacca taaaacaatt ctgatggcgc caaacgatgt aagttttcta     10020
     aatgaagaat tactcctcca agccgtttac aatcatctga aaatcactca taaaccaaaa     10080
     ttcaaagttg acgattatgt gcgaataagt aaatataaac atgtgttcga aaaaggttat     10140
     actccaaact ggacaactga gatattccaa atcaaacgga tacaaaatac caatcccatt     10200
     acgtatatat tgaaagatta tcagggaaat gatattaagg gaggatttta cgaatatgag     10260
     ctgatgaaaa ctaaatttcc cgatacatat ctagtggaga aggttattag acgtcgaaat     10320
     ggtagagcat tcgttaaatg gttaggattc tcatcagagc ataattcctg gattgatttg     10380
     taaacacaca cacacacaca cacgcacaca cacacgcagc atactatata tgtgtatgtg     10440
     taaagcctat aaacatttca ttccctcccg aaccgttaag atgtcgataa cattaacact     10500
     aacaggcaat acgtcagtac ttgttgcaga ttattttcct ccaattgaac ttgaacagaa     10560
     ctatcagtgt gcgttaatca gtctggacac ttataattcg attccaaacg ttgacgtaga     10620
     caataattta tttcatattg gtaaacattt gataaaaatc cccgtaggtt cctatgaaat     10680
     cagcgatatt aacgatctat tgacacgaaa atatagaaag ttaacacaga atgagaccga     10740
     cggaagtccc aaattctatc tagttccaaa ctataacact ttgcaatcag aaattttctc     10800
     tgcaactgat gaaatatatt tcaataagga aaagtcaatc ggctctttat tgggattcac     10860
     ttcgaatata ttaagcccta atatattaca tacttctgat aaggcaattg atatcacaaa     10920
     aattaatacc atttgtgtac aatgcaatat tataaatggt acatatataa acaacgaaac     10980
     aacacacaca ctacatcagt ttgcgcttgt cgttagtcct ggatataaaa taactgaggt     11040
     accacaaaat gttatatatc taccagtaaa cacaaaagaa atacattcga taactttaaa     11100
     aatctgtgat caagacggta atctgattaa ttttcgcggt gaaagaatta caataagatt     11160
     acatttaaaa ccaatataaa aaaaatgatt atatacaaca acaacaacaa cgtctataaa     11220
     aaggcattat cactcaattc tccctcactc gcttcaccaa cgctgaccag attagctact     11280
     cgacaacaac aacgacggcg acgacaacaa aaacaaatcc cattaacgga gtgcaataaa     11340
     aaatttttat tgagtttagg attcaaatta aaaaaaaaaa aaaatgtcac atataattaa     11400
     cgtgctcgag aaaccgacta ttgataattc aataataaag aaagattatc atagttattc     11460
     accctatttg cgatcgtatg agaacaatga cgaaattcgg attgccatac aaaatcaaga     11520
     tttgtatgtg ttgccgagcg aaagttttct tcacattcaa gggcatatca caaaagttga     11580
     tgatcaaatc gaaaccacaa tagctttatt gaataattgc atggcgtatc tatttagtga     11640
     aatacgatat gaattgaatg gtattgaaat tgatcgaaca cgacatttgg gtgtaacaag     11700
     cgatttaaaa aattatttat caattaaacg aaatcaagaa cacttgctcg aaaattgtgg     11760
     atggtccatc acagacaatt taaaacttga aagaggaaac tttaattttt gcgtgccgtt     11820
     gaatctgtta cttggatttg ctgaggacta caataaaata ctgctgaatg ggaaacacga     11880
     gctagttcta ttaagaggaa aagataacga tgatgtttat aagagcactg ctgtagcttt     11940
     aacaatgagt caattgaaaa tgacgatttc gagcattgtt tggaaaatgc cccatgtaca     12000
     attgtctgat gcttataaat tgtacatgtt taatgtgata aacaaacaaa cgccattatt     12060
     gattcccttc aggagttggg atatatacta taacccagta gttccacaga cwactacatt     12120
     tatttggagt gttaaattag ctgctgaaac tgaacgccct cgctatgtta ttatcgcatt     12180
     taaaaacaat aagaagtatg ttcattgtga tttagtcgat gtgaaagtat atctcaattc     12240
     tgaagtatat ccgtatgacg gattaaatca aaatttttct tataatagat atgcactatt     12300
     atacgatatg tatatcaatt ttcaaaaaag ttactacggc tgtgagtcac aaccgttatt     12360
     atcgctagag acttataaaa ataaggctcc cattattgtc ttagatgtaa cgcatcaaaa     12420
     tgaagcagta aaaagtggac ccattgatat acgaattgag attaaaacac aaagtaatat     12480
     cccttcaaaa acatctgcat actgtctcat aattcatgat aaattattcg aatatacacc     12540
     gctatcaaac gaggttagaa aaatattata aatatatata tatatatata caatgtacgt     12600
     atatgtgaat attttttcta ttgcgttctc tgtgagaatg cagcaagcaa gcaagcaagc     12660
     aagcattagt agcaagtcga actgcaagct agaaactaca atcaaaacga gaataaaaac     12720
     caaataaaaa aaatataaaa aataaaaata aaaatgttgc gaataataat cattgtaatt     12780
     attttactat tcggttgcaa tttcggggag ggaaactgta atcctattcc gaatcctgaa     12840
     tttgcttcta ttctgaatat caccaatagt atcaatacaa atacaaaaag tgtagaattt     12900
     aatataacat tatcgaacaa cgaggtgtta aaagtaaacc tctcattaga atttatgaga     12960
     caaccatcat caacaccacc accaccacca ccaccaccac caccaaccac aacaataaaa     13020
     cccagtgagt gggtggaatt gataactgaa tcgtcaacac caacaccacc agcagctgca     13080
     ccaccaacat caacagctaa cgatgaggac aatgccgagg ataatattaa agttacggtt     13140
     gatcaagtaa tcgaattgtt tcaagcaaac ctaatagaaa aggagaaaaa tattggagga     13200
     atactgaatg caacagtacc attctataga cactttaatc tccaatataa agagtcggct     13260
     atatcaattc gttgtttgta taaaagcaat tatgagaaga gaacactaaa tataaaatgc     13320
     aatcaatata ttgagacaat cattattgaa cgtttattag caaacggtga ggtagaacaa     13380
     acatttgtcg aaaaaaaccc caacaccctg aagaacatta tcctcaacga agacatcaac     13440
     aactatatac aaactgagac gatgacaatc acttgagaga gagagagaga gagagagaga     13500
     ggggcacgcg ctagaagtcg attacaacac acaaacaaac agacgcagcc aataaacgat     13560
     aatcagtgga gagccggagc cccgagagaa agagagcaga caaaaaaaac ttttttaatc     13620
     tttttttata cttataccta tatatattta tatacacata ctttattcat gcatttactt     13680
     actagtgttg ttgttgttgt tactaagcta tcagcccaaa acaaatgcag ctaatactca     13740
     ataatcagta gagagagagc caaagccaga gcccgagaga gagagacgtc aaaaaaaaaa     13800
     tttatattct ttatacctat atattataca tgcattcatg cattttttta ctttaatcac     13860
     aattctgtaa aactagtctt taagcattca cccacaggga aagtatataa tcgcataata     13920
     aaaattaata ataaatacac aaaataaaaa taattatggt tttgatatta ttatttgtac     13980
     ttggaatcct cgttggaata gcgtcagtaa aaagcgaata tgatatcaaa aaaattccct     14040
     accaaacgga aattaaatac tctagttttg atctcgttgt aaacgaaaca ttgactgtca     14100
     aagtaaattt aatttttgaa ctcaataccg catttgtgga agtgattcga gagagcagca     14160
     gcagcagcag cagcagcagc aacaacaaaa atcaaaatga tattagattt aaacgagatt     14220
     tggtactatt cgaacatatg cctcttactt tccccacgat cgatgaggta gttgaaaatt     14280
     tccgccgaga gttaattaga aaagaagagg atattggtgg aataattgac tcacccgctg     14340
     taatttgtag atatttcaaa ttaaaatact tgagaagtat tgtcaatatt cgatgcaatt     14400
     atcatagcga tttcgaaaat aaaacattac gaattttttg tcatcactat aatgctgtaa     14460
     gcaataccaa tgagcgaaac ctgatagaga aaaattattt ttttgaacga gactttacca     14520
     acgatgaggg agatgattat tacgataaag ccaaccccac caaccttcag ttagagagac     14580
     acatcggaac gtataacatc aatgattatc aacaggtttt gcatatgaat attcaataat     14640
     aacaacacac aaaaaaaaaa aaataatgac atttacaaaa aaaattattg attttattca     14700
     aaattatcta cacattctgt cgcccgagga taaagaaact ctccaaagta tacatatgcg     14760
     attagaacat attaaaaatt taaatattac ctttaatcaa atggaaacga ataaagagat     14820
     gagtacaact tatgctgctg ctgctgatga tgtagtagat tgtgaaaaag aacaacattt     14880
     caagtacata caacaaaaat tggttgatga acatgacgca ttacaaatta tgacttccta     14940
     tcaaattttg taagtatact acttataaat atatatatat atcagttatt ttatttgtta     15000
     tatatatata tttcagatca tcatcatcat catcatcgtc aacatctagt atatccgaac     15060
     aataagtggg aggcttcctg tgttgtttgt gtgtgtgtgt gtgttgtatt atagagcgag     15120
     agattgtaaa aaggaaaaca aagaaaatgg gatggaaaat taaggcaaga tagaatgtga     15180
     tatatagtat atagattcag ctataaaatt gagtgtatgt tggtcagtag atttagtatg     15240
     ttgaaaatta ttctcgagtc tctctctcaa gcatttcgaa caaaaaaaaa tgcattttcg     15300
     cgtattccta ttactgttag tatgcgcagt cgctaaaatc acttcaaatc aaacaacaac     15360
     aacaacaaca acaacaacaa caccacaacc cccgacaaca acagaaacag caacaacaac     15420
     aacaacaaca acaacaacac aaacaacaac cagcaccaaa gaaccagact catcagcagc     15480
     agcagcagca gacaacacaa catcagcaac acaaacaaca accagcatca aagaaccaga     15540
     ctcatcatca gcagcagcag cagcagcagc agcagcagac aacacaacag cagcaacaca     15600
     aacaacaacc agcatcaaag aaccagactc atcatcacag cagcagcagc agcagcagca     15660
     gcagcagcag cagcagcagc agcagcagca gacaacgatg acatttcaaa aacatcactt     15720
     gtaccaaaat atgtctatca tattaacatt actattatat ttttattatt gcttttgtta     15780
     gtctatcttg caattgtaat atttcaaata atcttttctt gttatataga ctgcatcaaa     15840
     gttgagatga ctgaagatgc agcatcacca gttcgaaata ataataataa ttacgaactt     15900
     aataatgcat attgtactca aaatatttaa aaaacaaaaa aaagaaaatt agaaataaat     15960
     taaaatacta atatttcata ttgtggtgaa actaaaaaaa aaaaatcgta tttaatattg     16020
     ggggtgagcg ggagggaggg cgggagggag agcgggaggg agggcgggag ggagagcggg     16080
     agggagagcg agagggagag cggagcggga gggagagcga gagcgggagg gagggcggga     16140
     gggagagcga gagcgggagg gagggcgggt aggtagagcg agagcgggat ttttttttat     16200
     cactcacttg ttgtgcagtt gaggaattta aatcacccac tcagccaata aatttaaaac     16260
     actttatttc ttcgttatca caagaagaaa aaaaatacaa aaaataaaaa tacatacttt     16320
     gtattgcaag tgattgtgtg tgtgtgtgtg tgtgtgtgtg cacttattgc gcagttgtga     16380
     atttaaatca catttttttt ctcaaagcat actcttatca tccactcagc caataaattt     16440
     taatgtcctt tttttcttcg ttatctttca cataacttta aaaaaaaaat acccagcaag     16500
     ccacctactc aaataaaaaa attgagcgtg ggggtagaaa taaacaaatt aataattttt     16560
     tttttgcaat ggatgcagtt atcgcacatc cggtgttcaa aagggatttc aaacaaaaaa     16620
     cacttacttt gtatttgcaa gtgattgcga gaaaatgtag cgtccacata cacacactca     16680
     atcagcgaaa agtttccaat aaatagcgct gagacagtca aattcaaagt cagttcataa     16740
     ttgaattaag tacgtgaaca atatatatat aaccaaaaaa ctaagcaagc aagcagaagt     16800
     taacatggag tcacaaacga tcaaatacaa gaaagtggta gtaggagcag aagaagcatc     16860
     cggttcaaat tggttaagca aattgagtag accaccgaaa gcgcttcgat gctccaattg     16920
     caaatgtgtg gtgtgtaccc acagacaacc cggttacgca acctcagaag aagacgaaga     16980
     agaagaagac tataccgtcc acgattacaa gatcttaact caaattcctg atgacaccat     17040
     tgaggataat aacgtaggtc tccaccataa ccatacctgc tgcgcctaga caaaacaaga     17100
     aaaaaaaaca taaaaaagaa tgtaaaatta taatttattc ttcatctctt tttttattta     17160
     tattttttca atcaaaaaaa aaaaaaaata aagggttcca aaaacacaca agtttctaaa     17220
     tctatcattg atggtgatgg tgatgctgct gctgctgctg ctagtactga tgatggtact     17280
     actgatgatg ctgctgctgc tgctgctggt gttgctgatg ctgatgctgc tgctgctgct     17340
     gctggtgttg ctgaaaagga agatcctcga cccaataagt tggttaaatc caccactgtt     17400
     aactctcttg ctaaacgaag atctatcaac agtgaagacg ctgttggtgt tgctgatcga     17460
     gaaattcgag agttaaagga tgaaattgaa gagtttcgta cgttatacga tgatgtaata     17520
     tctagcgctg atctgagaac cttacggact gtaaaaagac ttttgacagt aagaacagta     17580
     cttactccgg gggactacag agccttacgc ccaatcaggg ggcagttcat gtggggagcg     17640
     tttaatttaa tgcaacgtta tcgcttcttg cgtgaaaacc taacaaaaaa aaatcctaaa     17700
     attagtattg aagatgatga tgacgttttc ggtgcgggat acaataatag gaaagaatta     17760
     agcagttatg agattgaaac attcgttaat acagacgaag ttgatgagct aaaaaaagaa     17820
     atcgacgaat tttgcattga atatgaagac attctccctg atttcgaact acaaacctta     17880
     cgaaatatga gaaaattgat gacgataggg gcacacttat cagacagcga attgacgttt     17940
     tcacgtaaca ttagaaaacg ttttaaagtt ggagtttata ttataataca acgctaccag     18000
     gacttggccg atagaattga aaggcgataa taataataat aatatacaca tatataacaa     18060
     taacctatat atatatatta atctatcaac attaataaaa aaaacttatt tactcctgaa     18120
     aatagaatct cttaatatac aacgttctca tttcagctta cagtcacaaa aacaaaaaaa     18180
     aaaaaaaaaa aaaacaatat tatattgttt ctgtttaacg atctattgat tatattaata     18240
     ttcacaaaat attgcactag aacgttgaac agaaacaata tcaaaatcaa cgatcgtgtg     18300
     tgtgtgtgtg tgtgtaacgt aagttgaaga gtatattttt tccgtatcga tgaggaagat     18360
     ctgctatatt taatagatct tttttacgcg atcaggaaaa aaatatattt ttaaagcctt     18420
     caaaagaaaa aaaacagaaa tgcagagaaa gtgatgtgag ataaagagta tttttttttt     18480
     ttgtgtcgcg gaaagagatt tgctatttat ttaatagaag aactctttcc gcgataacaa     18540
     aaaaaagata tatctaaagc cttcaataat gtgtgtgtag aaattaaaaa aaagtgaagt     18600
     gtgtgataaa aagagtatat tatttgttgt catcatggga aaaatatctg atatatttaa     18660
     tagatatagc accacggtga catcaaaaat atatttaaag ccttcaaaaa tgcggagaaa     18720
     gttaagtgaa agagtatatt gttttaatgt tattgtgttg aaaaatctaa tatatttaat     18780
     agatattgca ccacgattac atcaaaaaat atatttaaag ccttcaaaaa aaaaaaaacg     18840
     cggaaaaatt gaagtgaggg taaaagaaga gtatattatt tattgtttta acgttatggt     18900
     gtsgaaaaat ctaatatatt taaaagatct ttaaacacga taacttcaaa aatatattta     18960
     aagccttcaa aatgcagaga aagtgaagtg agataaaggg tatattcttt ttaatgttat     19020
     tgtgtgaaaa atctaatata tttaatagat tattcgtcat gatgacatta aaaatatata     19080
     ttttaagcct tcaaaaaaaa aatgtagaga aagtgaagtg agataaaaaa tagagtttat     19140
     tgttttctat ggggctacat actctttgta ctatattaat attcacataa tacggagatt     19200
     tgtagtccaa agaaaataat atacatacat atataatttt taaacgagta acgacaaaaa     19260
     aaatatattt ttaaagtaaa gtgagataaa aagagtatat tgttttctat ggttgaggag     19320
     gggagttggg agggaggggg ggagggggag tgggaggggg agkgggaggg ggagtgagcg     19380
     caacccccca gagggtcaag caccaggaca agcgggagga caagcgggag gggaactggg     19440
     agggggagtg ggagggggag tgagcgcggc cctagcaact tccacaacaa caacttacgc     19500
     aagcgataag cgcccccgca ccagcgaaac agtgagtcag aacatacaat acaaatttat     19560
     ccagagcata caaatacacc atcgttttat ccagaacata caaatacacc ctact          19615
//
ID   Polinton-4_LMi repbase;    DNA;    INV; 14821 BP.
XX
AC   .
XX
DT   12-MAY-2014 (Rel. 19.11, Created)
DT   12-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-14821
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3023-3023 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           7371..6811
FT                 /product="Polinton-4_LMi_4p"
FT                 /translation="MKIYNINHYSTFTELKASVVERFNRTLKEKMWKKFSL
FT                 QGNYKWLDIVSKLVDEYNNTVHRTIKMKPIDVNEKNYKPNAMVMYPTKAKY
FT                 SIGDKVRISKLKGIFEKGYTANWSTELFEIEDVIYSDPITYKLKDIKGTFY
FT                 EHELQKTKYPDVYLVEKVLRKKGDKVYVKWLGFDNSHNSWVNKDNVIT"
FT   CDS           12485..13225
FT                 /product="Polinton-4_LMi_5p"
FT                 /translation="MQLTSSLADKIRMEGHIVNNGKIKSKKNEVLYPLEML
FT                 GGFFKYYEGIKFEGDLTVXLHGSSANDSILRWSSTNADGNEIAGTLPKEGK
FT                 IVVKSMEIRVPVVKYEPNYEIEKREFMLKNPKIPISFYELQTVEVAGLSGK
FT                 TNFEIDITNYYNSMEFDMPYFIFVVFQTNRKNNQLLDSSVYDHVKLRNLYL
FT                 KNGRNEIFPHEMWNIELKGAVDINPYNFITNYPIYVINITYRKNIVVTQKT
FT                 TMCYIQ"
FT   CDS           14529..13777
FT                 /product="Polinton-4_LMi_6p"
FT                 /translation="MKLGKPRSVCKMHKPRSKKSIHSKKSDNKNDTSKKCT
FT                 KCEMIKDITEYGTKLGKPRSICKKCINQDRKSRYHSKKTNNIQNEVNNIQN
FT                 DEKLNDMQKLVLQFEKADNIDILDPNLPNFIQPDVPEINQNGYCQNCNEWC
FT                 SDGTRCYNCYPDKISQHNNHKYREKYFMDKLNKLMKIEPNGALYISFSGFD
FT                 KSRIIEVFDVFNNHYKGKALPYEYFIAKIAELLNIKHEIEVHDTKRNSNLW
FT                 QQFLDMKPLI"
FT   CDS           join(6231..5290,5314..4736)
FT                 /product="Polinton-4_LMi_3p"
FT                 /translation="MYINEDTSIATIDENSNCYDKNKAIKYLNDYGYLDIP
FT                 DNQNTQVSDDAFREALMLFQLTYNLEINGELSDDTLNFMKMPRCGVKDEFG
FT                 SYRTSMYKWNKKNIKWYYKGATKKVLHVAEAAFNLWQKYIDIQFHYDSNNP
FT                 DILITNKRRKHRYEIDKNMHCSKELDGKGNVLGHAFFPTLNNDPVEIHMDD
FT                 DELWYLEIDENTPKYQTNLFEVLVHEIGHTLGLLHSDVYGSIMYAYYNGSH
FT                 LELSQDDIEAIQSLYGKVSPQPTTPKIIVNVPTSSTPIEPVASLCENKHFD
FT                 HLLFANGNLYVLYKNGCGLVMIKWVWIGNDMKSKLITDWLTFLPKNLQIIN
FT                 GIYQRPTGEVVIFVDNMIYMMYLDTLQLIPGYPKPLSSTGLRNDYKINGVV
FT                 NTYTGKTFVFHNDFFYVEIDECNFKYKVRGIITRQFSGLPPAVSSVFRYIN
FT                 GMLYFFKDDTFYEYNEFTKKVVKXGTTDLSLFGINCALIPDVIDVLKIQYK
FT                 SLNIFLLYKWI"
FT   CDS           join(3710..3480,3484..3014)
FT                 /product="Polinton-4_LMi_2p"
FT                 /translation="MNVNELKALAKHLNLNGYSKLRKSDLLQLIQNTQTLF
FT                 PFATDIFEEPNEEMFIIIIQLKKHFKIRYKHIILKTTLKLNYRSTTYYDIT
FT                 KPTVYQLIKDNRKIYNGLKVNLILFCEFKLNITNEIKEFRFSTYNYIITNE
FT                 KDLNKFYVKRKQQMLTHMHDFQDRGSGWMLNRIIGLQLGINKYTPLNGSSY
FT                 IELPKILKDKKACINVKNNDEKCFLWAIASALNPVGNVIELVTI"
FT   CDS           join(2726..2388,2445..1948)
FT                 /product="Polinton-4_LMi_1p"
FT                 /translation="MCLQHFNSESKLNTHKEDCSKNKSVKIRVPNKGECIT
FT                 FKNYNHTMRVPFVIYADFESLLLKMDTCEPNPDESYTMKYQKHEPSGFCYY
FT                 VKYIHDKIKILLYIEDQMHIRNLLKQNKDPVVYRGPNAHKKFIEMIKNEVE
FT                 EIGHIYSQIEPMKKLTNTQTKIHNESKRCSLCESPYTPTNRKVHHHDHLTG
FT                 NYIAPLCNECNLKLQQPTFVPIFLHNLTGCDSHLXIKELGYEIELIPNNEE
FT                 KYISFGKQTNNLNEVYCTFRFMASSLDKLSLIYQKLNA"
XX
SQ   Sequence 14821 BP; 4873 A; 2189 C; 1714 G; 6020 T; 25 other;
     agtagatgag gaatgggcat tctggaccaa ctgccaaaat cagtcattta aaccctattt        60
     cattgctatt ttaagaccat ttatcatcaa aatcagcaat tgttcttatt ttcagcatga       120
     tatagccata aagtagggaa atgcataatt gggacacttt tatgaataat gaattaatat       180
     ttacaatata tacacacata cctagtgatg atgaatcagt atttacaaat agtatctata       240
     atatatatag aactagtgat gattaattaa ttatatacaa taaactataa tgtccaagtg       300
     gaagttattt attccatcat tcaaaatgtg ccttttatca tcatttgcac ttaatgctat       360
     tttgtatata tttcatgttt ataacttcta attaattcat tgatctatat aattcactat       420
     tgttgaataa gcattcttta taatcatcaa ttgatatttt attctttact actgattttt       480
     taacaccttt agattttttc tttatttcat caccaacttt atatgcatac cttttagctc       540
     ttaatcctac aaattcagtc attacttttc cattacattc atctttcatc tttcctaata       600
     cctttttatt cacttgtggt atattgtaaa cattatcatg tggataatca cttgtatcaa       660
     agtgttcaat catatttttc atatccataa aagtcatctg tttttatatt gtatatataa       720
     ctatcagtat cttgataaca caactcaata ttcttctcca tattttggtt tcattattct       780
     ataatgaaaa tcatacatca gttctttaga taaatcgagt atactcattc caacatagat       840
     gggtttatta aatttaattt cagttttatt catatgaatt gctaccagat tttcattaaa       900
     tattgttcga tgtttgaaat ttggtttagc tattaattat cacatttttt accatctgat       960
     actaatttta tattcactct attacatatg ttttccattg ttttaccaaa cacagaatta      1020
     ttcatcagtt taaagaaatc tttttaaaag tcatttgttg ctttcatcct catttcagta      1080
     ttcaaatcta tatatttcct cagcaatcag actgtttaaa ttttaaagcc ctatgtattt      1140
     ttgttaattc aatcctaatt gtagatattg ttttaagttt cgataatgta caacgtattt      1200
     atatttatta tttaatgttg ttaataatgt atgtccattt tctggtgcta atggtacatc      1260
     tttatgtttg tcatgtaact caattggata ttctaaatca acttcaaata tatatccata      1320
     ttcagaatta tctgatattt tcatcacatc aatatctaaa ttattttgcc attcaaattc      1380
     accatatggt aaatattgtg acattgcatg tccatataaa ttatttgcat ctaaatacat      1440
     taaatagttg attccttgtt tgaatcataa tgtttcatgt atttattatt tgctttaaca      1500
     tatcttttac aacattgtgc tataccacct cttataccat tttcaatcat taatatcata      1560
     tcataatcat gtaataattc cagtggttgt ttagtcatta ttaacatagc atcccatgat      1620
     aaaccaggtg ctgtataata ccatgcagat ctaatcatat gctttataca agtttttcta      1680
     aaattttcaa acatcagcca ataataatct gttttaagat ataatcatga tattcaccat      1740
     attttgaata ttgattttcc aaaataactt tgaktgtaga taatctgcag tagttatatt      1800
     ttcttcatta agtttgctwt agagtgcttc tttaggtggt aattgtgttt cattgaatct      1860
     attccaactg tccatataat catatggata aatgcctttt taataactag atccactaca      1920
     tcatcattaa agaattgttt aatattaagc atttaacttt tgataaatta atgataactt      1980
     atctaatgat gatgccataa atctaaatgt acaataaacc tcgtttaaat tatttgtttg      2040
     tttgccaaaa ctaatatatt tttcttcatt atttggtatt aactctattt catatccaag      2100
     ttcttttata wacaaatgtg aatcgcaacc agttagattg tgtaaaaata taggtacaaa      2160
     tgttggttgt tgaagtttaa gattacattc attacatagt ggtgctatat aattgccagt      2220
     taaatgatca tgatgatgta cttttctgtt agttggtgtg tatggtgatt cacataatga      2280
     acatcgttta gattcattat gtatttttgt ttgcgtattt gttaactttt tcattggttc      2340
     tatttgtgaa tatatatgtc caatttcttc aacttcattc ttaatcattt caataaattt      2400
     cttatgtgca tttggtcctc tatatacaac aggatcttta ttttgtcatg aatatatttc      2460
     acatagtaac aaaatccaga tggttcatgt ttttgatatt tcattgtata tgattcatct      2520
     ggatttggtt cacatgtatc catcttcaat aataagcttt caaaatcagc atatataaca      2580
     aatggaacac gcattgtatg attataattt ttaaatgtta tacattcacc tttattaggt      2640
     actctaattt taactgattt atttttagaa caatcttctt tatgtgtatt tagtttactt      2700
     tctgaattga agtgttgtaa acacatttta catagatgaa ttttaccatg atgtgatgtt      2760
     ttctgatttc taactaaacg tgataaatct ttaatccaac aataatgaga atttttacat      2820
     tttcatgtat aataaatcta tgtgtacttt attttcacat tttgtaacct ttaatggata      2880
     tatttcatat ttctcatcat acgcatacac attaatcgat atattgagtt tacattcata      2940
     tttaggaata ttatcaattt taactggata ttctattgtc caattttagt ttctaattgt      3000
     ttcatacatt ctatatagtt actagttcta ttacgttacc aactggattt aatgctgatg      3060
     ctatagccca caagaaacat ttttcatcat tattcttaac atttatacaa gcttttttat      3120
     cttttaatat cttaggtaat tcaatatatg atgaaccatt aagtggtgta tatttgttaa      3180
     ttcctaattg taaaccaatt atcctattta acatccatcc tgaacctcta tcttgaaaat      3240
     catgcatatg tgttaacatt tgctgtttac gtttcacata aaatttattt agatcctttt      3300
     catttgtaat gatgtagttg tatgttgaga atctaaattc ttttatttca ttagtaatat      3360
     tcaatttgaa ttcacaaaac agtattaaat tcacttttaa tccattatag attttacgat      3420
     tatcttttat taactgatat acagtaggtt tagtgatgtc ataatatgtt gtggatctat      3480
     aattttaatg ttgttttcaa tattatatgt ttgtaacgta ttttgaaatg ctttttcaat      3540
     tgaatgataa ttatgaacat ttcttcatta ggttcttcaa atatatctgt agcaaatgga      3600
     aatagtgttt gagtattttg aatcaactgt aataaatctg atttacgtaa tttagaatat      3660
     ccattaagat ttaaatgttt agctaatgcc ttcagttcat taacattcat tgatgatgga      3720
     tctttatttt caatattagc caaagataca tttctaattt ttctttttct tttattatga      3780
     ttatctcaaa taatatctgt agcatatgga aacactgaaa ttttatakac tctatcaaat      3840
     caggtttacg tagtttagag tagcctttaa gatttaaact cttagctaaa ctttgagttc      3900
     attaattgtg ttgtagctcc atttattaag gaaaaaacta taattttgtt gtctgtattt      3960
     gttgtctact gtagacaata ttacatattt atgtatataa ttattattag aatatttggt      4020
     agcaatacat ctatttatta aggataaaaa ctattacttt tgttgttgta tttgttgtct      4080
     atttatttga acattagtgt atctatttat gtatataatt attattaaga atatttagtg      4140
     ccaaaactca ctatatatac agatatttag ggtccgcatg ccgtaccctg aaatagagta      4200
     tataattatg acatgtcata aattgaattt tttctgtcat aagtttgttg tgaattaatg      4260
     ttttaaatgt cgtttgttac atacatttta ccacattcac atgtaacctt ttctaaaatt      4320
     ttatccttat attatcataa tatttcatag tattgacatg cacattgatt acatatacta      4380
     cgatgaccat cttttttaaa tttgtcaata tgaaattcat taatattttt ttcatttcac      4440
     atcgactaca ctttttggtc gtatccattt attaaaatgt gttaaattct aacacatgta      4500
     atttatctat cattccatta tatacaatat tccaaccaat catgccatcc tatcattttt      4560
     ccatatctat ctggtaatat aattttgaat tcattattga gttccaaaaa tgttttataa      4620
     ccaaatttgg tatttatgac atcaacattt gtaatttgat actctttatt cacttcaaca      4680
     tcacacagtt tcatcaatgg tatattttta ttgatactat taagcttagt agctagatcc      4740
     atttatatag tagaaaaatg ttcaagcttt tgtattgtat ttttagtaca tctattacat      4800
     ctggaattaa tgcacaattt ataccaaata atgataaatc agttgtacca mcttttacta      4860
     ccttctttgt gaattcatta tattcataaa aagtatcatc tttgaaaaaa tacaacatac      4920
     cattaatgta cctaaatact gaacttacag caggtggtaa tccagaaaat tgtctggtta      4980
     taataccacg wactttatat ttaaaattac attcatctat ttcaacatag aaaaagtcat      5040
     tatggaaaac aaacgtttta ccagtatatg tgttaactac accattaatt ttataatcat      5100
     tacgtaatcc tgtactagat aatggttttg gatatcctgg tattaattgt aatgtatcta      5160
     aatacatcat atagatcatg ttgtcaacaa atattacaac ttcaccagtt ggtctttgat      5220
     atattccatt tattatttgt aaatttttgg gtaaaaatgt taaccaatcg gttattaatt      5280
     ttgatttcat atcattacca atccacaccc atttttataa agtacatata aatttccatt      5340
     tgcaaacagt aagtgatcga aatgtttatt ttcacataat gatgcaacag gctcaattgg      5400
     tgtagatgat gtaggtacat ttacaattat ttttggtgtt gtaggttgtg gtgatacttt      5460
     accatataaa ctttgaatag cttcaatatc atcttgagat aattctaaat gtgatccatt      5520
     atagtatgca tacataattg atccatacac atctgagtgt agtaaaccta atgtatgacc      5580
     aatttcatgc actaacactt caaatagatt tgtttggtac tttggtgtat tttcatcaat      5640
     ttccaaatac cacaattcat cgtcatccat atgaatttca actggatcat tattcaaagt      5700
     tggaaaaaat gcatgtccta acacattacc ttttccgtct agttcttttg aacaatgcat      5760
     atttttatct atttcatatc tatgttttcg tcttttattc gtaattaaga tgtctggatt      5820
     attgctgtca taatgaaact gaatatcaat atatttttgc cacaaattaa atgctgcttc      5880
     tgctacatgt aacacttttt tagttgcacc tttataatac cattttatat ttttcttatt      5940
     ccatttatac atgctagttc tatagctacc aaattcatct tttacaccac atctaggcat      6000
     tttcataaaa tttaaagtat catcacttaa ctcaccattt atctcaagat tgtatgttaa      6060
     ctgaaatagc attaatgctt ctctaaatgc atcatcactc acttgagtgt tttgattatc      6120
     tggaatatcc aaataaccat aatcatttaa gtactttatt gctttattct tatcatagca      6180
     attactattt tcgtcaatag tagcaataga agtatcttca tttatataca tttaaaaaat      6240
     tctattttca tatattcatt ktcactattg aaatatagat caataatatg atcatctatt      6300
     gttgaagaaa attcccaatc agatgaagta attgattctt taaaasttag aaatatcttt      6360
     tcatcataat tatawatamt aattctgtaa gtagtatata acattttttc ctgttttata      6420
     taaccaattc taagattatt gtgtaaataa aaatgtatgt taaattcttc aagtttagat      6480
     atgacatcta tcaacctcat ttattagtaa caaaaatagc atattaaatt gggtctgaca      6540
     tataatgaaa aaatattaat gatttggatt atttatttta tcatctaaaa aacaagataa      6600
     aaattcaaaa atggataaga taacatacaa atgcaaaata tgtttagata caacattaga      6660
     ttatcatgat ttctgtttct taaaatattc ataaacaaca catatttctc accattcaaa      6720
     tcataaacat aattcaaaga ctcatcagtt aactgattta tgaatacaga acatcatcat      6780
     caagaagaaa aaactatcac tctttattca ggtaattaca ttatccttat ttacccaact      6840
     attatgtgaa ttatcaaatc ctaaccattt aacatatact ttatcacctt tttttcttaa      6900
     cactttttca acaagatata catctggata ttttgttttc tgtagttcat gttcataaaa      6960
     ggttcctttg atgtctttca atttgtacgt aattggatct gaatatatta catcttcaat      7020
     ttcaaataat tccgttgacc aattggcagt atatcctttt tcaaatattc ctttcagttt      7080
     gcttatccta actttatcac caatagaata ctttgcttta gttggataca taaccattgc      7140
     attaggctta taattttttt cattaacatc tattggtttc atttttatag ttcgatgtac      7200
     tgtgttgtta tattcatcaa ctaattttga gacaatatct agccacttgt aattgccttg      7260
     aaggctaaat tttttccaca ttttttcttt taatgttcta ttgaatcttt caacaacaga      7320
     tgcttttaat tctgtaaaag ttgaatagtg attgatgttg taaattttca tcagttcttt      7380
     aaaatctctg ttatagaatt cttttccatt atctgtttgt aaattttttg gttttctgtg      7440
     tctaaatatt ttttcaaaag catcagttac attttaccag ttttatcttt aactggaata      7500
     gcccaagcaa atttagaaaa cacatcaatc acagtcaata aatatttata gcctttattt      7560
     attttcgaga ttcctttcaa atttccagaa tccatttcaa ctaaatcagc ctgccataaa      7620
     tcatcaatcc caaatgatac tacttttctt ctattataat ttttcctcat tggtttatgt      7680
     aattcattaa ttatttcttc acgaacatca gatttatttc aatttttaac aaatttactc      7740
     tttttagttt tacatactga acaatacctt caattctttg ccttccattt tttgttgtta      7800
     ctctgtgagg attatgtgtt tctgtaaatt ttttacactt caaacaataa atgtgatcca      7860
     tttatatagc ataaaaatta ttcttctaaa aacaattcac caaatataat taattttaca      7920
     tctacaggtg taacagtatg tatatctttt aaccttatag ttagacaatc tgattagtgt      7980
     acatttattg aaacattmtc ttcatttatt tcatatggta catgatttcc tattaatgta      8040
     atcatcaaat ttgaggtttt ttagtagtat gattctttta agcctgaaat catattcaaa      8100
     atgtgcattt tktggtattt mcaktctaaa gaaaattcaa ttaacttgtt tgtcatgtac      8160
     cwtgccttct attttttcaa catctgtttc taatcaggta tatttcatta aaatcattta      8220
     caatatcatg acttatttcg ttcatcaatt ctgctttagt gacatagtta ttgaattgtg      8280
     ttagaatact catgtattca ggttttgtaa catattcctt ttctaagtat tgtttagtaa      8340
     cagcatcata accacctatt ggatctttta tatctactaa tcttctacct ttaaaatcaa      8400
     cataagtttt agttacttta aaaatgtacg taattctttc tggaattgtt taatcaaatt      8460
     cttttggttc taaatattct attttatttc caaaaatgtc catttattaa attcaaaata      8520
     tcattaaatt tataattatc acatagtagt tttaaaacaa atagacataa atgaccacat      8580
     attacttcat caaaattttg tattctttca gtattgtagt atagttcatt ttccctaaat      8640
     agttaactag ttgttttggt atattaccac caaatgaatc aaaaacaaat ttattatcat      8700
     tattcttata gtaacaaatc caatgagtac caacatgatc agatgtatct aaattaacta      8760
     ttccacattc attaattttg gtttatttgg taattcatca atcatgaaac accacgaaag      8820
     tgtttaattt ttaattgttt agcaagtttt tctatatcaa aattacttaa tgcattagga      8880
     tatttatcaa ttactttttg gaatttttta accctgtacc tttcttttcc atttccaagt      8940
     tgtgtctttt ctgttcttct aattcttcat cagctttctt cttgtttata ctgcatttgc      9000
     aattgctgca gatccaccag ctagtgaacc aattgttgct agatatggta atgcwgctaa      9060
     taacaatggt aaaaatccac cttcatgttg tgttaatcct ttccttcttt cttttttgtt      9120
     agatattcaa taatcttttt cacaacagga atacctaatg taacaagtaa atttccacca      9180
     gttttctttt ctttcttttt tgaacatcag ttaaaaatgg ttcaattgca tttaattgtt      9240
     cattattgac tttaatttaa ttgattttgg tttagttttg ccactaggta gcaaagtata      9300
     atcaatagta aagttattca tttatataga taaaaattta taatccccaa ccattttcat      9360
     caacattata aacccatwcc taattttcgt tttccataca ttattcctct aactgctgtt      9420
     gctgctactt tttcaccaaa tgaagcatca cttgcataca ttctttcttt tgcagctaat      9480
     tgaagttctt tatcagctgc atgtctagat tctaaatctt tatgatctct atatgcaata      9540
     tcatgttgtt tgcaagcttc atctaatgga tttattcctg atcaccwtgt gctaatcttt      9600
     catctaattt tgtacctgga ccacaataat tataaccagg aagatgcatt tcgaatggaa      9660
     tttgttaatc aagtgtttac taatcctttt ccatatttat cacttttcca aaatgtgtgt      9720
     ggaagaaatt attcaaaaat ctaatcaagt atggaattcc ttttggatta tcgttatgaa      9780
     atcactaaat ttgtttgtta acatctgtgc tataccaact ttttcattat gataattttt      9840
     atttccagct agttcttcac catgaattac tgctaatcta tcgattaatt gtcgaacatc      9900
     attcatccaa acatattcaa ctggtttttc tgtatatttt ttaactaaac cttcaccttt      9960
     ttttagggtg ttttctgatt ttggaaaata gacatcaaca attttttatc aaatttttat     10020
     atttattacc tctacttgat tttattttat ttggattatt atcagaatat aatgctcctg     10080
     aatatatatc tgcataattt gataaatcta cagatcaaat ttttcattca tatcatccat     10140
     agtaatttgt tttttagtta aaagtcatta atccatctgt accttcatat gttttttcac     10200
     caatttttaa tttatctcca ttaaattcta caggtaaatt accaacatat ttaaacatgc     10260
     caacaggttt taatccaaaa actttatctt cactatgatt aatatacttt aacattcttt     10320
     cactaacatt tattttttta gcactttttt ctcttcttca tatttattca atacatcttg     10380
     aatttctgat tcacttaaat ctatttacca gcaatcatat tttttaattg gtgatatatc     10440
     tcacatgata tggaatcatt tgtttttcaa cttctctatt ttcttcaatt gctttcagaa     10500
     cattatcacc taatccttca atccttgttt tacttgttca attgcatcaa taacaggttg     10560
     atcttctttt ttatattttt catattctgt tcttggttgt tttttccaaa gcttaaattc     10620
     ttcttttaat tgttcagctt tctttctatt tcgtttagct ttttaacaac atcttcatca     10680
     tattttgcaa acatttataa agaaaaaaca ttaatgttta tgtttaacat ttatgtttta     10740
     tgtttaacgt ttatgtttga tgttatgttt atgttaatgt ttgttgacat tgatgtttat     10800
     gttgttatga aatgttgtat tttatttctg aacttacctc atttggtttt ctagtcatgt     10860
     ctattgtgaa aaatccaaac tcatcattcc aacatttact acacatttct ttaaagtcat     10920
     caaactttaa atctccacca acaaactcat gataaatgtg atktagattt gtgtcatcct     10980
     gtctgaaaat atttaaaaaa ttgagattat ctctgactag ttgttttgtt atttttgagt     11040
     agtttgagcc aaataaaaac aatctattcc tttatgtcta cctctagtaa aatattctct     11100
     wactacatct tgattttcaa gaataaagtc atcaaaaaca actactgaat tatattcaca     11160
     ttgatctaat ggtacaattt catcattact ttcaataaaa gtagcaatat tttcattttg     11220
     cttatcttca attttttaca ttttttaata aattcttgat actttggttg atctaaactt     11280
     ttagaataaa catacaaatg attaatttta ttccaattta accatcctgg tgctaaaata     11340
     tagttatcaa tcatcaatgt agttttacca cawccacttg gtccwataat agcacatcta     11400
     attgaatttg gtaaaagttt accatgttta ttttttggtt tcttttctgg aattcgtatt     11460
     tttggttccc aatctgtctt catttaatta ccaataaatg agtagaataa ttcaactgag     11520
     tggtaattca tcagtactca aaaaaagatt aactgttcct ataagagata gttttaaaag     11580
     tgtagcattg gttggatttt atacacattt ttaactccaa atgttacaac aaaaaataat     11640
     aaattatatt gtgatggtga aacaataatt aattccaact ggtcaatata ctttggaaag     11700
     tttggaaaaa tatattcata caaagaagcc taatatccat attaaagcag atgaaatttt     11760
     aaatagggtt actattgaaa gtgatgttaa gctgtatatg gacataaaaa agaggataat     11820
     atagcaagtt tgctaggatt tagtaatcag actattaatg caaacgaaaa gactgttgct     11880
     aagatgttcc taagattatt ccatttgaat taataaatgt aaattttaat ctagctgatg     11940
     gmatgtatgt aaagcataat gatcattttc atcgtgaaac aaatattatt gcttcattta     12000
     agccaaatgt tgaatttggt gcaccaataa tttatgagcc ttatcatcct cttttgttcc     12060
     agttcatgat aaaattcagg atttagtggt aactataact gacgaaaatg acaatctaat     12120
     cgatttcaat ggtgctactg tgactgtaat tttattctta ataaatgaag aacaaaattg     12180
     aaagctatca gtttcagtca ttcccagtga atgaaaaaag aaaaaataac ctgaatattc     12240
     ctaataaaga tacagaaatt aacatcaatg ttggtgatgg atggatgcat cctaatcaag     12300
     ctcaattgta catgaatttt gatgttattc attcagatgg atcgattttt cagcatatga     12360
     tggcaagtca aatgttaagc taattgataa ttatgttgta aagctatttg actttataac     12420
     cattaaaaaa ggaaacaata ttttatctag aattgagcat ccatttatat catcaactgt     12480
     tttgatgcaa ttgacttcat ctctggctga taaaatacga atggaaggtc atatagttaa     12540
     caatggtaaa ataaaaagta agaaaaatga agtactatat cctctagaaa tgttaggtgg     12600
     attttttaaa tattatgaag gaattaagtt tgaaggtgat cttactgtak ttttacatgg     12660
     stcaagtgca aatgattcta ttcttagatg gtctagtaca aatgcagatg gaaatgaaat     12720
     agctggtaca cttccaaagg aaggtaaaat tgtagtaaaa agtatggaaa ttcgcgtacc     12780
     agttgttaaa tatgaaccta attatgaaat tgaaaaacgt gaatttatgt tgaaaaaccc     12840
     aaaaattccg atatcattct atgaattgca aactgtagaa gtagctggat taagtggtaa     12900
     gacaaatttt gaaatagaca tcacaaatta ctataattca atggaatttg atatgcctta     12960
     cttcatattc gttgtatttc aaacaaatcg taaaaataat cagttgcttg actcatcagt     13020
     gtatgaccat gtaaaactac gtaacctata tttgaaaaat ggtagaaacg aaattttccc     13080
     acatgaaatg tggaatattg aactgaaagg agctgttgac ataaatccat acaacttcat     13140
     aacaaattat cctatctatg tgattaatat aacatataga aaaaatatag tagttacaca     13200
     gaaaacgact atgtgctaca ttcaatgata aaattccgaa tgatacactg cttacatagt     13260
     tatgtatgga aagaaaaatc tgacttatga tgctcaacat agaatgctaa cagaaaactt     13320
     ttaactgtct gtatattctg atgaagcaaa tcagcaaatg gccaaaaaaa aaaaaaaaaa     13380
     atctactttt agcattaaaa atgaataata ttattaagac acaaatatgt ttataagttt     13440
     gtattatatg tcacaaataa taaaaatgca tttaaaagat aattatgatt ctagtattac     13500
     acatttagac aaagaatgaa aatgacttaa atgaagtaat gcctgaaaaa tgtaatcaat     13560
     agtaataaat gggtgtagta tttttagaat gatgacagta aatgaatata atgttcttct     13620
     aattgtatat ttcaattata tgaaaagtat tattataatg tgtaatcatt attaaagcaa     13680
     aaaagcatga aacattacaa acttattgta tatatcttgg cggagctcta atttgtgctt     13740
     ccatatattc atcaaattcc ttttgttttt taattatatt aaaggtttca tgtctaaaaa     13800
     ttgttgccac aaattactgt tacgtttggt atcatgtact tctatttcat gtttaatatt     13860
     taacagttca gctatttttg caataaaata ctcatatggc aaagccttgc ctttataatg     13920
     attattaaac acatcaaata cttctataat acgactctta tcaaaaccac taaacgaaat     13980
     atacaatgca ccattgggct caattttcat taatttattt agtttatcca taaaatactt     14040
     ttctcgatat ttatgattgt tatgttggct aattttatct ggataacaat tatagcaacg     14100
     tgtaccatca ctgcaccact cattgcaatt ttgacaataa ccattttgat taatttcagg     14160
     aacatctggt tgaataaaat taggtaaatt aggatcaagt atatcaatgt tatctgcttt     14220
     ttcgaattgt agaactagtt tctgcatatc atttagtttt tcatcattct gaatgttatt     14280
     cacttcattt tgaatgttgt tggttttctt tgaatgatat ctgctttttc gatcttgatt     14340
     tatgcatttc ttacaaattg atcttggttt acctaatttc gttccatatt ctgttatatc     14400
     ttttatcatt tcacatttag tacacttttt tgatgtgtca ttcttattat cacttttctt     14460
     tgaatgaatc gattttttcg atcttggttt atgcatttta caaaccgatc ttggtttacc     14520
     taatttcatt ccatattcat tttatctttc agcatttcac acctagtaac ttctgacaat     14580
     gttgtccatt tattatataa aaaatgtcag tatttgttgc ccattattgt attgtctgta     14640
     aatattaatt cattattcat aaaagtgtcc caattatgca tttacctatt ttatggctat     14700
     atcatgctga aaataagaac aattgctgat tttgatgata aatggtgtta aaatagcgat     14760
     gaaatagggt ttaaatgact gattttggca gttggtccag aatgcgcatt cctcatctac     14820
     t                                                                     14821
//
ID   Polinton-4_NVi repbase;    DNA;    INV; 12608 BP.
XX
AC   .
XX
DT   14-APR-2009 (Rel. 14.04, Created)
DT   14-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-12608
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 794-794 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus may be  incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           5021..3786
FT                 /product="Polinton-4_NVi_1p"
FT                 /translation="MEEVLSIQSPVVFDESVAHYEIHAHQPYTLSNFNNSD
FT                 EIRIGIQHQDLCVLPSRSSLHICGKLQKPDGTAIEGTRFVNNAICHLFEEI
FT                 RYELNAIEIDRCKNVGLTSLMKGFVSFNPSQSSAIENAGWLDIAETQRLDD
FT                 NGYFDVSIPLGMILGFAEDYRKIVVNAKHELILTRSNSDVNSIVQTQVVVA
FT                 GANVYEDYQVEITKIEWLMPYVVLSDKHKIKLLNHLEKDRPITMSFRSWEL
FT                 YEYPLLPSTSKHVWTVKTANQLEKPRFVILGFQTNRKGRKTANASRFDHCN
FT                 ISNVTLFLNSQHYPYGNLNLNITNNQYALLYDMYANFQNAYYNKEVEPMLK
FT                 KADYLSYAPLIVIDCSKQNESLKQASVDVRLEFEARANIPVGTSAYCLILH
FT                 DRIVEYNPMSGDVKKIV*"
FT   CDS           7221..7916
FT                 /product="Polinton-4_NVi_3p"
FT                 /translation="MDFQQQKIKLPVSNFDTLTEQQKVQKRHGELLPDNIR
FT                 AVFCGPSNCGKTNTLLALITHPNGLKFENVYIYSKSLKQPKYKFLEKLLRP
FT                 LPGIQYFPYSEHDTVVPPDDVLPNSIMVFDDVACERQDNVRAFFCMGRHKN
FT                 VDCFYLCQSYAHIPKHLVRDNVNVLVVFRQDDVNLKHIYDDHVNPDMTYTN
FT                 FKALCSACWKEGKHGFLFIDKERPINDGRYRKGFDCFATNI*"
FT   CDS           11961..10291
FT                 /product="Polinton-4_NVi_5p"
FT                 /translation="REISIAKEKRRFPLRLCEFIGKTQRFRATAKRFWNKF
FT                 NISNLGQYSDLYLKTDVLLLAEVFENFRTSCLKAYGLDPAHYYTAPGLTWD
FT                 AMLKYTNIELELLTDIDKVMFIERGIRGGISQCCNRYSRANNIYMGTDYDA
FT                 DQYSKYLIYYDVNNLYGWAMQQSLPYGGFKWMTETAISQTDFSSVDDESAI
FT                 GYILEVDLEYPEQLHDDHRDLPLCPQHMKPPGSTYSKLMTTLHSKERYVLH
FT                 YRNLKQALANGLQLQRIHRVLQFNQRPWLKAYIDLNSSMRKEAKNEFEKNL
FT                 YKLMNNAVFGKTMENVRKRVDLKIVTKWDGRYGAEALISQPNFHSRSILDE
FT                 NLTIIELTKTEVNMDKPIYVGLCVLDLSKTLYSFHYDYMKKQFGDDCKLLY
FT                 TDTDSLIYELRNIDIYEVMKRDIEHFDTSDYSENNTFGMPVANKKVVGLMK
FT                 DECNGRIMTEFVGLRSKMYSIRVEGQDKVKKVKGVKTAVVQNSITFDDYIQ
FT                 CLQNMSTQTREQCIIRSHTHNVFSEKQVKLALSPHDDKRYLLRGETDTLPW
FT                 GHYKIMQTD*"
FT   CDS           join(7160..6288,6423..5950,5953..5216)
FT                 /product="Polinton-4_NVi_2p"
FT                 /translation="MYWDQLRAVLSCIMIIHKQQRRKGRGLVNSLINKLPV
FT                 ELHLPGYQYCGPGTKLAKRLARGDPGINTLDRACKEHDIAYSQNRENVEAR
FT                 NAADKVLAAKAWERVRAADAGVGEKVAALAIAGTMKAKSKFGMGLKRIKKK
FT                 KPSISLAKVIKAASTSAVPSNNSHAVIRSALKAARQAVNKAGGKKNIRIPR
FT                 MLSVPSKIGGFLPFLIPIFAGLSATGALAGGAAGIAKAVNDASAAKRQLDE
FT                 SQRHNKTMEAIALGGRGLYLKPYKEGYGMYLKRGQGLRKKKKTSNCRNAHQ
FT                 NNGSYCARWPRSLSETLQRGLWYVPETWARFKKKKKNFKLPQRALTDADLL
FT                 KYARILKIPYFRGVYMRNALPASGPHYRESAIVNLDDKSGPGTHWVAYRKR
FT                 GNHVVYFDSFGDLQPPQDLMEYWNVSRVKYNQEHYQDYNSYNCGHLCLKFL
FT                 LNDIYISVGSASASVSLVRVVMEDSLTLSLSGTSAVLEAQYFPPLELSANK
FT                 SYVLGLVELLTFNSIPNIDTGNNKFYVGGEVIILPTGSYEIEDIEKSLKEA
FT                 LTPKGITLKLKPNNNTLRCMIKCNRSIDFQPDDSIGKLLGFTSRVLSPNTD
FT                 YESDLPVTILKINALRVECNITSGAYINEHKVHTIHEFFPAVSPGYKIIEV
FT                 PSPIIYLPVTVKTINNLQLHIVDQDGHLVNFRGEVITIRLHIKSV*"
FT   CDS           join(7970..8926,8877..9356,9277..10239)
FT                 /product="Polinton-4_NVi_4p"
FT                 /translation="MADFRREKAVLQQIDKAREAIRRKHRLLKQGKASMEK
FT                 ALGETFKPIVDPLEKLVRVKEEVKPDIKQELKKEKSFDDDVKDDEDNEDDT
FT                 LLNETADTSFESAQEDSEDEKIEKDSKIKNKHSLSLKENRHEKDTEMNNKY
FT                 LSALMQNRQRYLDHVFGIRQDGQILKIGDSPIEITRNNIIVLNRKYPKTEG
FT                 LQELLFRLHPDEALIKSDDLQNYKNILEATNAHRKYYSYNQPIRQQNSKKY
FT                 NNIIAPLFKVQSKTGGGLLPRYKVARKGTLMDYIYWDDPNELVDRLRLLMA
FT                 ERLAGNNSHLNEIHSIIEELREAKIIYTKSIPSSKSCEKLKLYINRRREHV
FT                 EVSSKMSVDVFGRQSNRSKGRRGPPGVGYKLTADGHFDIGSRRLCNVAEPL
FT                 ELNDAVNLAVLQRSINSEIRSVHEITSDLRQSIDAVELAVQIAKDENAEKL
FT                 RKIDLAISELYEILLKNSQNNNDTSKGETSGGTSVNCMRFCLKILRIIMTH
FT                 QKARLVEELHKPARRNYQRRRFIMRGLDDTWQADLVEMQPYAQENKGYKYL
FT                 LTVIDVFSKYAWAVPLKQKTGNEVAAAMKSILQQGRVPKNLHTDRGKEFYN
FT                 SSFESLMKQYGINLYSTYSNLKASICERFNRTLKNKMWMQFSLRGNYKWLD
FT                 ILPDLLTEYNNSKHRTIGMKPKDVSRENEAKVLKRFSHQESRKKAKFKVGD
FT                 KVRVSKMKQVFEKGYTPNWSTEIFTISQVVPTYPVPTYKLKDYRDQPIAGG
FT                 FYEQELLKAKYPDVYLVEKVLKKRGNKLYVKWLGFDNTHNSWINKSDL*"
XX
SQ   Sequence 12608 BP; 3779 A; 2487 C; 2504 G; 3838 T; 0 other;
     acatgctgca tcacaggtca gacagcatct acgcaatgca taccagcagt agctagccgc        60
     atggatcaag ttagacgtga gcacctttat ctgtacgcat cgacggcata ataagctcga       120
     ctgcaaagtg tgacgagagc cgtgcgacgg gggtgattgc gtcagcggtt agctgcaggg       180
     tggcttcgga cggcatactt cctgctgact ccaggaggct gctcaaggtg tgcatctgac       240
     accgggagtc agctgctgtt gcaggctcca ggggcagcat atttcggtat actccgggta       300
     gcttacgagg gatccgctca agctcagagg ctacgcatta cagaattttc tgggagcatg       360
     ggatcaggtt gcatgtgttt ttccttgcca aacgtcagcc cggtgagcgg tagctgacag       420
     tcgctgcagt atcgggttac ccagcattgt tttttcgcag gtccgtatat ccagcgtagt       480
     atgtagccgc ggatattttg tcaagtggtg tcttattgtc actgctgcga atcactttcg       540
     atcaagtcat ctttcgctag tgatattctt cttctacgaa tgcgcggctc ttttgaagac       600
     gattcgcatg aacgtcgcag tgaatattat tattttctgc gataacgatg tatttttcac       660
     tcacattgcg gctcttttaa gatgatctcc catgaacgtc gcagcgtata ttattatgtt       720
     tatgcgtgtg ccttattttt ttcaccgctg tgaatttgcg cttcacgcag tcgaatcatc       780
     tttcacaacg gatattatct ttctttgaaa tagtcttacg agcgcgcttg gatataagca       840
     ttttgttatt attcaattgg atagttttac atttttctaa atagaggggg acccattaac       900
     gggttgctat aaaagccagc ggactgacag aaaatgagca gttcgacttt tgagtaaata       960
     ccttacacat cgtactatat caagcttact ttaagttgaa gtatacgaac tatggatttt      1020
     gaagaattaa ataaagttgg tcaacacgcg tatctgccaa cgaaaaaaat ttctgaatta      1080
     gaagtagaaa aaaagtttaa aataactaaa ataaaacagt ttaaaataac taaaataaaa      1140
     cagttgaaaa caaaatttgg aaataaaatt tacgttgaat tagatgattg tttcggtatt      1200
     tttgtaccat caagagtttc aaaatattta acagataatc aagattattt aaacaagtta      1260
     ttagctcagt ctcaagaagg aaaaatttat ttacaatatt ttggtggtga tacaaataaa      1320
     gtacaattcg gaaattttta aaataatcat aagagctata ctagtatata ctcatatgtc      1380
     atctcgaacg cgaagagaga tgaaacggcg tggcgtgtcg aattaaaaaa gaggaacgca      1440
     caacgctgca ctgcatattg tttatgaaaa cttatcctct accgtatact accataatac      1500
     tgtctacgtg acccttcgag tatataaagc ctaaggatca tcagagagac catagttcca      1560
     gctcatccac tcaagctaag acatcttgtc agttcttctg ttagctgcat tctctctcat      1620
     cgtatccgag tttctacgtt tccatcgtat ttaacagtaa gtatcaagat attgttttat      1680
     tttaaagatt tttgaatcta tcttatagta aacaaaaaat catgccgata ttagcgcagc      1740
     ttgtttgctt taacgaaatg atactcggaa aaaaattatt atacatagat tttattatgt      1800
     gcaatgtgat aaagcaagct gactccgctg cgtgcatcca tatttcattt taaaatcata      1860
     gaaaacggat atctttttta gctgtcattt ttagtaaata ccttaaactt aattaatact      1920
     tataaataat atttttattg caggaattag aaaaatgagc agcagcagtg gctatggaag      1980
     taacagcaat gctagcgggg acagcggcgg ctcatccaac ggggagtata tttttatact      2040
     tccaagagtt cgagcacctg caggaatgga ttaaccctac tcctgctgaa ctgcgctcta      2100
     ttaatttggc tatagaccag tacgatgatg acacgtttga aattttcatg gtcatgagat      2160
     ccataccaac gcatctgatg aaagtattca acatttttag ctttcaaaaa gtgtcaagtt      2220
     taccaaataa cttctaaatt aaatatattc aataatgtag tgcaacgttt tgaaatgtta      2280
     tatgtagtgc aacgttttga aatgttaagt gtagtgcaac gttttgaaat gttaagtgta      2340
     gccttttgta gcaatataac cgctcttgga aagtattaca gtggttaaat aaaaataaaa      2400
     gaaaaaacaa ataacaattt ttgtacactc gctggtagtg gattctcgtg gaatgtttgt      2460
     gaaatgaagt agccttattg gttagttttt tttttgttaa gtcaaaccct ctgattggag      2520
     cataattaaa aaaaaaaaaa aacctttccg taagaatccg ctactaccga gtgtacataa      2580
     atcctatgat tattccttct cctaatgcac gtatttttat ttttaattat tcaattattt      2640
     tgaaattttt taaaaaaatt ttgatgttaa aatttttaaa tttgggtttt ttaattgaaa      2700
     ttatttttaa ttatagaggg attaggtaca ggtttataaa atagtagtca caattaaaat      2760
     aaatacattt attttataga caacatctca agttttttca taagtactgg tacaataatt      2820
     ttgtccgttc tttcaatcct taatttaaaa cgctctcgat ctcgggctgc ttgctcccac      2880
     tctccacgac gtgccttttt atatgcatac acccatgtac acattaaatg aactgttgga      2940
     ttttcttgaa aacgcacctc cttcttcatg ttgctattca ttttgagcat ttagtttaca      3000
     ctgcacacaa tctcttttta aaggtggaac tccactctca attgaattgt gctctcgaca      3060
     gcgtagacac tccaaaatct ctgagtcctg ctttaggtgc tctggcagct tatcccaagc      3120
     tagctcgata ctattggcgg caaatgttat gaggaattct cgtggtaaat atgcaatatc      3180
     tctcagagtc ataaatgata ggttctctgt gcgataaaat tctctgagag atctctcaaa      3240
     agatggcgta ttgtcgtgat aaaacttttt cagcaacaat acatttctgt gtgcgcagtt      3300
     tgccttgaac gctaacttat ggtgtgggca cagtggctca caaaatatca tatttcagcc      3360
     tttgtaacga gggaaagccc atttcaccca tatcaactac gtgaaaattg aacttctcga      3420
     gccattgctt cttctcggct cctttgacgt acacaacact cgcgttatgt agaacagttt      3480
     tcaagacatt ttccagctcc tcgtaggcca gatcccccga actccatgat aatccgtgat      3540
     aattgcgttc cagccagaga ttttcagact tgtacttggc tgtgagtcta cgccaaggtg      3600
     tgggcggctt gaaaaaaaaa taccaatgtc ttgagttgag cattaagtgg aactatggca      3660
     agttccttga cgacaaattc gttcacaggc tttctgaatc cttgtacatc gagcacgtac      3720
     tccattttga ctgaatgcct accacaagct gcttctcaat ttataccatc ttctcccacc      3780
     accctttaaa caattttttt cacatctcca ctcatagggt tgtattcgac tatgcgatcg      3840
     tgtaggatga gacagtatgc agaggtgcca actggaatat ttgccctagc ctcaaattcg      3900
     agacgtacat caactgatgc ttgcttaagt gactcatttt gttttgagca gtcaatgaca      3960
     atgagagggg catacgacag atagtcggct tttttcagca ttggttctac ctctttgttg      4020
     tagtaagcat tttgaaagtt ggcatacata tcgtagagta gagcatactg attattagta      4080
     atattgagat tgagatttcc atagggatag tgttgagagt tgagaaaaag tgtaacgttg      4140
     cttatattgc aatgatcaaa gcgactagca ttggctgttt ttcgtccttt gcgatttgtc      4200
     tggaagccaa gaataacaaa gcgaggcttc tccagctgat tggcagtctt gacagtccac      4260
     acgtgtttcg atgtactggg caacaatgga tactcgtata gctcccagct acgaaaactc      4320
     atggtgatag gtctatcctt ttccagatga ttgagcaatt taattttatg tttatccgag      4380
     agcaccacat atggcattag ccattcaatt ttggtgattt caacttggta atcctcgtaa      4440
     acatttgcac cagccacgac tacttgcgtc tgcacaatag aattcacatc agaatttgat      4500
     cttgtgagaa taagctcgtg tttggcattc acaacaattt tgcgataatc ttcggcaaaa      4560
     cccaggatca taccaagtgg aattgatacg tcaaagtagc cattatcgtc aagccgttga      4620
     gtctctgcaa tgtcgagcca gcctgcattt tcaatcgctg agctctgact agggttgaat      4680
     gatacgaatc ctttcatgag acttgtcaag cccacattct tgcatcgatc aatctctatg      4740
     gcgttgagct cgtaacgaat ttcctcaaat agatgacata tggcgttgtt tacaaatcgc      4800
     gtgccctcga tagcagtgcc atctggcttt tgcaattttc cacatatatg tagtgaactg      4860
     cgcgaaggca gcacacatag atcttgatgt tgtataccaa tgcgaatttc atcgctgtta      4920
     ttgaaattcg ataaagtata gggctgatgc gcatgaatct cgtaatgcgc aacagattcg      4980
     tcaaatacga caggtgactg tatgcttagc acctcttcca tttcgctgaa agcagcaaaa      5040
     tattacacaa cttatttttt tccaaggaca actcttaaac ctagactttt tagaaactgt      5100
     atgttttgac gtgttagcgc tttgagcact cgtcgacgac tgatcgctcg acggcatggc      5160
     acgttactat tataaccttt accaacttta gtattgtaca caatacccat aatgctcaga      5220
     ctgatttgat gtgtaatcta attgttatga cttcaccacg aaaattaact aaatgaccgt      5280
     cttgatcgac gatgtggagc tgcaagttat ttatagtctt gacggtgact ggtaggtaaa      5340
     taattggtga tggtacttcg ataatcttgt agcctggtga gacagctgga aagaattcgt      5400
     gtatggtgtg taccttatgc tcatttatgt atgccccaga tgtaatatta cactcgacgc      5460
     gtaaagcgtt gatcttgaga atggttactg gcaagtcgga ttcgtaatca gtatttggtg      5520
     acaatacgcg actcgtgaaa cccaacaatt tgccgataga atcgtctggc tggaaatcaa      5580
     tcgatcgatt acacttgatc atgcaacgaa gggtgttgtt attcggcttg agtttgaggg      5640
     ttatgccttt tggtgtaagc gcctctttca gactcttctc aatgtcttca atctcgtagc      5700
     tgcctgtagg caaaattatc acttctcctc ccacgtaaaa cttgttattg cctgtatcga      5760
     tgtttggtat tgaattgaat gtcaacaact caacaagtcc gagaacgtaa cttttgttag      5820
     ctgaaagttc aagcggtgga aaatattgag cttccaatac agctgaagtt ccagacaggc      5880
     tcagtgttag tgaatcttcc atgactactc gaactaaact gactgaagcc gaagcagaac      5940
     caacacttat atatcattca gaagaaattt taggcaaaga tgcccacagt tgtagctatt      6000
     gtaatcttga taatgctcct gattgtactt gactctgctc acattccaat attccatgag      6060
     atcctgaggt ggctgcaaat caccaaaact gtcaaaatac actacatggt tgcctcgttt      6120
     tcgataggcg acccaatgcg tgcctggtcc gcttttatcg tcaagattga cgattgctga      6180
     ttcgcgatag tgtggtccac tcgctggtag tgcatttcgc atgtaaacac cccgaaaata      6240
     tggaattttc aggatgcggg catatttgag aaggtcagcg tcagttagtg cgcgttgcgg      6300
     caatttgaag tttttttttt ttttcttaaa ccttgcccac gtttcaggta cataccatag      6360
     ccctctttgt aaggtttcag atagagacct cggccaccga gcgcaatagc ttccattgtt      6420
     ttgttatgtc tttggctttc gtcaagctgt cgtttagcgg cgctagcatc gttcactgct      6480
     ttagcgatac cagcagcgcc acctgctaat gcacctgttg cactcaaacc ggcaaatatc      6540
     ggaatgagaa atggtaggaa tcctccgatt ttggatggga ctgacagcat acgtggaata      6600
     cgtatatttt tcttgccccc agccttgttt acagcttggc gagcagcctt cagagcgcta      6660
     cgaatgactg cgtgagagtt gttgcttgga acagcagaag tggaagcagc tttgatcact      6720
     ttagccagtg aaatagatgg cttcttcttt ttaatccgtt taaggcccat tccaaactta      6780
     gattttgctt tcatggtgcc tgctatggcg agagcagcta ctttttcacc aactcctgcg      6840
     tctgccgctc ggactcgctc ccaggctttt gcggccaaaa ccttatctgc agcgtttctt      6900
     gcttcaacgt tttctcgatt ctgtgagtag gcaatatcgt gctccttgca agctctatca      6960
     agagtattga ttccaggatc tccacgtgct agacgttttg ctagtttagt gccggggccg      7020
     cagtactgat atcctgggag atgcaactcg actgggagct tattgataag tgaattcact      7080
     aaaccacgac ctttgcgtcg ttgctgctta tgtatgatca tgatgcatga gagtacagct      7140
     ctcaactgat cccaatacat tataaacgcg ctttttatag ctaacagcaa tagtcgctct      7200
     caagctgacg aagcgttcac atggatttcc agcaacaaaa aatcaagcta ccggtgtcga      7260
     atttcgatac tctaacagag cagcaaaaag tgcaaaaacg tcacggggaa ttactgcctg      7320
     acaatattcg agcagtattt tgtggaccat caaattgtgg taaaaccaat acactgctcg      7380
     ctctcataac gcatcccaat ggactcaagt ttgagaacgt gtacatctat tcaaagtcgc      7440
     tgaaacagcc caagtacaaa tttctcgaga agcttttgcg acctctacct ggtatacagt      7500
     acttccccta cagtgaacat gatacagttg tgccacctga cgacgtactc cctaattcaa      7560
     tcatggtttt cgatgacgtc gcctgtgaga gacaagacaa cgtcagggct ttcttttgca      7620
     tgggaagaca caaaaatgta gactgtttct atctctgtca gtcatacgct cacattccga      7680
     aacatttggt gcgcgataac gtaaatgtgc tagtagtttt tcgtcaagat gacgtaaatc      7740
     tcaaacacat atacgatgat catgtgaatc ccgatatgac atatacaaac ttcaaagctt      7800
     tatgctcagc atgctggaaa gagggtaaac atggatttct ttttatcgac aaggagcgac      7860
     ccatcaatga tggacgatat agaaaaggtt ttgattgctt cgccacaaat atataacgta      7920
     tagcaggtgt gagtagttgc agtagactgt gattcatcaa agagtcaaca tggcagactt      7980
     tcgacgtgaa aaggcagttc ttcagcaaat tgacaaagct agagaagcaa ttagacgcaa      8040
     acatagatta ttgaagcaag gtaaagctag catggaaaaa gctctgggcg agacttttaa      8100
     gcccatagta gatccactag agaaactggt gagagtgaaa gaagaggtta agccagatat      8160
     taaacaagag ttaaaaaaag aaaaaagttt cgacgatgat gttaaagatg acgaagataa      8220
     tgaggatgat acgctactga atgaaacagc tgatacttca tttgaaagtg ctcaagagga      8280
     tagtgaggac gagaagattg agaaagacag taaaataaag aacaagcatt cactatcgtt      8340
     aaaagaaaat cgtcatgaga aagacacgga aatgaacaat aagtatctgt cggcgttaat      8400
     gcaaaatcgc caacgatatc tcgatcacgt gtttggaatt cgtcaagatg gtcaaatact      8460
     caagattggt gattcaccta tagaaatcac cagaaataat ataattgttt tgaatagaaa      8520
     atatccaaaa actgaaggac tgcaagagct gctttttaga ctacatccag atgaggcctt      8580
     gattaagtca gatgatttgc aaaattataa aaatattctc gaagctacaa acgcacacag      8640
     aaaatattac agttacaacc agcctatacg tcaacagaac agtaagaaat ataataacat      8700
     cattgctcca cttttcaaag tgcaaagcaa gaccggtggt gggcttctac caagatataa      8760
     agttgcaaga aaaggaactc tcatggacta catatattgg gatgatccca acgaactagt      8820
     tgatcgtcta cgcttgctca tggctgaacg attagctgga aataatagtc atctgaacga      8880
     aatccattcc atcatcgaag agttgcgaga agctaaaatt atatattaac cgtagacgtg      8940
     agcacgttga agtcagtagc aagatgagcg tcgatgtgtt tggacgtcag tcgaatcgct      9000
     ctaaaggtcg tcgtggtcca cctggtgttg gctacaaact aactgccgac ggacacttcg      9060
     acattggaag cagaagattg tgtaacgtag cagaacccct agagctcaac gatgcagtga      9120
     atttagcagt ccttcagcga tcaatcaatt cggaaatacg cagcgttcac gagatcacaa      9180
     gtgatctgag acaatcgatt gatgctgtag aattagctgt acaaatcgca aaggatgaga      9240
     atgctgaaaa actgagaaaa atagatttag ctataagtga attgtatgag attctgctta      9300
     aaaattctca gaataataat gacacatcaa aaggcgagac tagtggagga acttcataaa      9360
     ccagctcggc gtaattatca gcgtcgacgg tttataatgc gtggcttgga cgatacctgg      9420
     caagctgatc tggtggagat gcagccttat gcacaagaga acaaaggcta caagtacctg      9480
     ctgacggtta tcgatgtctt ctcaaagtac gcttgggccg tacctttaaa gcagaaaact      9540
     ggcaacgaag ttgcagcagc aatgaagtct attctgcaac agggtcgtgt gccaaagaac      9600
     ttgcataccg atcgaggcaa agaattttac aactcctcgt ttgaaagcct tatgaaacag      9660
     tatggcatta atctctactc gacatatagc aatctcaaag cttcaatctg tgagcgcttt      9720
     aatcgcacac tcaagaacaa gatgtggatg caatttagtt tacgaggtaa ttataaatgg      9780
     ctcgatatct tacctgattt actgacggag tacaataaca gcaagcaccg caccatcggt      9840
     atgaaaccta aagatgtcag cagagagaat gaagctaaag tccttaaacg tttctctcac      9900
     caagaaagca gaaaaaaagc caaatttaag gttggagata aggtgcgagt gagcaaaatg      9960
     aagcaagtat ttgaaaaggg ttatacaccc aactggtcga cagagatttt caccattagt     10020
     caagttgtgc caacgtatcc agtgccaacg tacaagctga aggactatcg agatcaaccc     10080
     atcgctggag gtttttacga acaggaattg cttaaagcca aatatccaga tgtttatctc     10140
     gtggagaaag tattgaaaaa acgaggaaat aagctttatg taaaatggtt agggttcgat     10200
     aatacgcaca atagttggat aaataaatca gatttataaa taaatgttta caaattgtct     10260
     ttttattcta acattgtata caatttattc ttaatctgtc tgcataatct tataatggcc     10320
     ccaaggtaaa gtatcagttt cacctcgtag caagtacctt ttatcatcgt gtgggcttaa     10380
     agctaatttt acttgttttt cactaaatac attatgcgtg tgagaacgaa taatgcattg     10440
     ttcacgagtc tgtgtagaca tgttctgtaa acactgtatg taatcgtcaa aagttattga     10500
     attttgtact acagcagttt tcacgccttt tacttttttc accttgtcct gaccttccac     10560
     tcgaatactg tacattttac tgcgcaaacc aacaaattca gtcattatgc gtccgttgca     10620
     ctcatctttc attaagccaa ctactttctt gtttgccact ggcattccaa aggtattgtt     10680
     ctccgaatag tccgaagtgt caaaatgttc aatatcccgc ttcataactt catatatatc     10740
     tatattacgt aattcgtata ttaaactatc cgtgtctgta tacagcagct tacaatcatc     10800
     gccgaactgc tttttcatat aatcatagtg aaagctatat aacgtttttg ataaatcaag     10860
     tacacagagt ccaacataaa taggtttatc catattaact tcagttttag tcagttctat     10920
     aattgtcaaa ttttcatcta gtatgctgcg actgtgaaaa ttaggttgac taataagagc     10980
     ttcagcaccg tacctaccgt cccatttggt aactattttc aggtcaactc gctttctcac     11040
     gttttccata gttttaccaa atactgcatt attcattaac ttgtaaagat ttttttcaaa     11100
     ttcatttttt gcttcttttc tcatgctact attcaaatct atatacgctt ttagccatgg     11160
     cctctgatta aactgtaaga ctctatgtat tcgttgaagt tgcaatccat tagccagagc     11220
     ttgctttaaa tttcgataat gcaaaacata tcgctcttta gagtgtaaag tcgtcatgag     11280
     cttcgagtac gttgaacctg gtggcttcat gtgctgagga catagaggca agtctctatg     11340
     atcgtcgtga agctgctctg gatactccaa gtccacttca agaatgtagc caattgctga     11400
     ttcatcatct acgctggaaa agtcggtttg actgattgct gtctctgtca tccacttaaa     11460
     gcctccatat ggtagtgatt gttgcattgc ccatccatac agattattaa catcataata     11520
     gattaaatat ttggaatatt gatcagcatc atagtcggta cccatgtaaa tgttattcgc     11580
     tcgagaatag cggttacagc attgacttat tcctcctctt attccacgct caatgaacat     11640
     tactttgtca atgtcagtga gtagctctag ttcaatattt gtatatttga gcattgcgtc     11700
     ccaagttaag cctggtgctg tataatagtg tgctggatct aatccgtatg ctttcagaca     11760
     gctggtgcga aaattttcaa aaacttcagc tagcagcagt acatctgttt tcaaatagag     11820
     gtctgaatat tgacccaagt ttgaaatatt gaatttattc caaaatcttt tggcggtagc     11880
     tcggaaacgt tgagtttttc caatgaattc acataatcgt aagggaaaac gccttttctc     11940
     cttagcaatt gatatttctc ttcagtcagc tggttatctt tgttaaactc ttgcttgagg     12000
     atattcacat cttcgaggta agatgacaac ttgtctagtg acatgccata aatcgaaaag     12060
     agtcgataaa tttgaaattg atatcactac catcaatgtg tttcgtaaat gatataaatt     12120
     tctccttatt tataggcagt aggttgactc taccaggtat acattgagca atatctctga     12180
     ttaaaaagtg tgaatcatat ccagtcaggt tgtgaaagat cactggaaca gagcgagaat     12240
     cttgatagtt caagttacac ttctcatgct cctcgatatc tgaaacacat ttaagtatag     12300
     tacttgtcat cggggcgcta ttgttgttat tattattatt acgtgaaaat attaccttcc     12360
     agtgagatgg cagtgatcac gtactctatc aagctccaga actttctcac aaatgtgaca     12420
     agatgtagct cgctggaaag actgctcttg ctcccaagtc aatgtctcaa taggtatggg     12480
     acaccaaaat actgtttcaa tgttttcagc aagttgtaaa agctcgtcaa caaaccattt     12540
     tgcaggatta ggtcctctat agctacgata atacgagagt gaatcatcgt aactgcattt     12600
     catataat                                                              12608
//
ID   Polinton-4_PBa repbase;    DNA;    INV; 15965 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   18-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-15965
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 645-645 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 15965 BP; 5004 A; 3010 C; 3244 G; 4706 T; 1 other;
     agtagctata taaggccggt tctaactcgg gagctccgag gggggtagag gggcagaggg        60
     gttccgcgac gcggggcact ccataagcga tggatgcggg gtccgcgggg caagggaggg       120
     gggaagtgcg tcactaggcg cggggtccgc ggggcgagga ggtggaatat ggcgcggggt       180
     ccgcgaagcg aggggtcacg tgcggggtcc gccgccgccg ccgccgccgc tgtcatcatg       240
     ttctctctct taccattttt tcttctctct tccttcctct tctctcttcc ttcctctttt       300
     cttaagttct ctctctttcc accaaggtat ctcgttttgt cttgatattt ttttgtaatt       360
     ttaatttttt aaattaatta ttttatttaa aattaattat ttatttaaaa ttaattattt       420
     ttttaaagga gattttttta aatattactt agtaatttaa atttattatt atgagtgata       480
     ttattattcg cgacaagatg cgtcggcacg cgactcgtta tcgcagcgca acctgaaacc       540
     gctgaattga aaggaagaat ggagaataaa ccgagtaata tttatcataa tatacattta       600
     ttggtcatgt aatgcatagt gtacaatatt atctattgcg tacgctaata attcacaatc       660
     tataatcgaa gttttgtcaa aaatgtcgct ctcgcgcaaa gtttttattg caatatgttt       720
     atctgtgata caattccgcc gtaaaaagtt tataaattgt ttaaattttt cgctgacacc       780
     atatatattc tcatagagcc agtaatatac atgttcgacg caatgttcaa gttcaaatag       840
     aaagaatacg gttgacggct tcatgtacaa gcatgtatcg cgcaatgtaa actttacaat       900
     atttgtattt cgcatttgaa caagttctat aactagatca tgaatcgaca atgatgaagg       960
     agcaattgat tgcacaagct gctcgatatc cacacgtttc tcgatgaggg ttttccacat      1020
     tacataaggc aataatattt gattgcctcg attatcacca atacgtaatt ccacatagga      1080
     tacaggtccc acgttgattc caatatccaa atatttataa gctgtggatg ttaaggcaaa      1140
     tcttcttccc aagatacgag atgtacaagg ttccgaagat gatgaattat gagaagatat      1200
     actgtaagga gaagaataca tataagtaag ctattaatat attaaaatat ataaaatgta      1260
     taagaaagat ttgtggtaat gaaacttact gttttttgta cgcctcattc tgttgaatcg      1320
     aagtgtaata attcacagag cttcccttgt acattttttc aagagctgtt tctttttaca      1380
     gaggtataga ctgttcgtct ttcacagagc gattaatgca ataatgattg ttgaagttct      1440
     ttttaatttg tatacccctc tattcttttt tcgacggtct actacgcgag atgtgaaata      1500
     taactctcat taaaattgca attttgcatt tttgcataag cgccgacgaa tggcagctgc      1560
     gatgagatta tacagaataa atctacttta ggcacgtttt cgtacatcat tcgatatatg      1620
     atgtaactgt agacactgca acatttgcag taatattagc gccaatatat ggctgctgcg      1680
     atgaatttcg cgtaaatatc tttatcatgt cacaatgaga tcacctcacg tattaaaatt      1740
     gcaaatttgc aaatccacat aggtcaacgg tacgaaatat atattttttt aagaacaatt      1800
     gatgtttttc gcgatgagat cggacacgtg ttaaaattac aaacttgcaa tttcacgtag      1860
     gttaatggta tgaaatatga tattaagaac aatgggcacg tcacaacgtg tcctgcgatg      1920
     agatcattgt gttaaaaacg caattgttgc attttcacat aagtcaagaa taaaatcttt      1980
     atacatcatt tgatacactc tgaaattaaa tgccacatgc gaaaatattc taaaggagat      2040
     acaaccatca ttggtaagat ataatgaaaa gactgtgaca cgttctgtca ttagtcgaat      2100
     tgtaagttga gagttgtaca tcaaagaaga taattaatat ggagcaaacc gaatgtgttc      2160
     ttttggaaca atctatccga ttgaattcga gagaagagta cgtcgcgtgg gagcaacgat      2220
     gcgacaagta tatcgagtcg ctagaagagc atggtcgaat taaacgcccg cgattatcaa      2280
     ttagtattag acaatcattg gtcgcacgga tagcgcgact cgaaagtttg aaagattcgg      2340
     tacgccaacg attcgtgacc gcgggtgctg gatacagcgc aggcctcaga tggcgcgaga      2400
     ttaatacggc gtttgaaagc cgtgttttga ctggtgcggt cattaatacg aagcacatcg      2460
     aacctcgcca atttctcgag gatgcgaaga acattgtgtt tgagcgtgtg caaaatatca      2520
     tgcagaaaca taacaatatc aaggtgaata cagtatttaa cggtgaattt gttgcgaatg      2580
     acaaacgtgc aaataaaagt gtcaacacga gaaactgtga actctttcgt tcgtccaatt      2640
     tacacgagtg gtacgagttg cgcgttattg agcctacctt ggcatccctg gaagaatttc      2700
     aggaacgcga tagcgggtgg gcattgtcgc gtatactcaa tttgactgtt aatataaaca      2760
     aacacaatcc tctgcacgcg ggatgttaca ttcagttacc gcgggaaatt atgatgaaga      2820
     gagcggtgat caacgtacag tctacggaca atgcgtgttt tgcatggtca gtggtcgcgg      2880
     ctctgcatcc aattgaaaga aacacagaac gagaatcctc gtatccacat tatacgtcgg      2940
     tactcaattt tcaaaacatt gagtttccga tgacgttgga ccaaattaaa aagtttgaat      3000
     ttctcaacaa catatccata aatgtatact gcatcgaaaa gaagaaagaa ctttcgatcc      3060
     ttccgacacg tcttaccaat acgaagaagg aaaagcatgt caatctgctg tacgtgcagg      3120
     atccgcggga cgataacgcg ggacatttcg tgtggatcaa gaatctgtcc cgcctcatag      3180
     gctcgcaact caacaaaaaa gaacacagga aatttttttg tgaccggtaa gtatacatat      3240
     tttaataagt tgagaaatat tttatactcg tttaaaaaaa actaaaataa ttatgtttct      3300
     tgcagatgtt tacactattt tagcatgagt gaaaaattgg aggctcacat catagactgt      3360
     acagagatga acgactgtgc catcagatta ccgagtgagg acaacaagtg gctcagtttc      3420
     aacaattata acaggaaaga acgagttccg tttgtcgtgt acgcggactt ggaatgcatc      3480
     ctggagaaga cggaaaatgg acatccgaaa acatcaagct acgcgtacca gcaccatcgg      3540
     gtatttagca taggatatta tgtacgctgc tcgtacgata actcactatc cacatatcgg      3600
     tttcgtcgcg ataaggattg cgtcgtgtgg tttgccgagg aactcagaag tttagcgcat      3660
     cgcgtaaaga ctattttgtc cgctaatgtc cctatggcaa attttacgcg agaagattgg      3720
     gaaaaattta ataacgctac gtactgtcac gtgtgcgaaa aaccgttcgc tccagatgac      3780
     acgcgggtac gcgatcattg ccatctaacc ggtcgattta gaggtcccgc gcattcaaat      3840
     tgtaatttaa attacaaaga ctcgcattgc attcccatag tttttcacaa tttatccggc      3900
     tatgacgcgc attttatcat tacggaaata gctacggcat atgaaggacg agtagaatta      3960
     cttccgataa caaaagaaaa atacatttcg tttacaaaaa atgtcaaaga tacggaagac      4020
     aaaaatgatc agaaaaattg tgttaaatta cgatttattg attcattcaa atttctcaat      4080
     accagtctcg acaaactggc atccttcttg agtaaagata agctacgaat attgcaatgc      4140
     gagtttcaaa atttatcgac acaagatttt aatttactga cgcgaaaagg catctttccg      4200
     tacgagtaca ttgactgcgt cgaaaagttg gaggagttat gtttaccatc acgcgaatca      4260
     ttttacagtt cattgacagg tgacaccgtg tccgagagcg attacgcgca cgccggcaac      4320
     gtatggcagc ggttctccat ccgaacgctc ggcgaataca gcgatttata tctcaagact      4380
     gacgtcttgt tgttggctga tatctttgaa aattttcgtg atagttgcat cgcgagttat      4440
     ggactcgatc ctgcgtacta ttatacccta ccgggtttta cgtgggacgc aatgttgaag      4500
     catactcgcg tcaatttcga actgctcacc gacatcgaca tggtcatgtt catcgaacgc      4560
     ggtatacgcg gtggtctaag tcaatgttcc aaccgatacg cgcgagccaa caacaagtac      4620
     acgcagtcat acgatccatc gaaaccatcg tcgtacctta tgtactttga cgttaacaac      4680
     ttgtacggtt gggcaatgtg tcaaccattg ccttacgcaa attttcgatg gatcgtcgac      4740
     gtgtccaatt ttaacgtaaa cgcaacacca ctggattcgc ctatcggtta cattctcgag      4800
     gtagatttgg agtacccgga acatcttcac gacgcgcaca ttaacctacc gttttgtcca      4860
     acgcgcgata aaccacccgg taagcgacag gacaaactcc tcgcaacctt gtacgataag      4920
     aaacgttacg tcatacatta tcgcaaccta cagcaatgta ttcgtcacgg tcttcgcgtt      4980
     acaaaaatac atcgcgtatt gcaattttcg caatctccat ggctccggga gtatatcgaa      5040
     ctcaatacga aatttagaac actcgctaaa aatgatttcg agaaaaattt atataaattg      5100
     atgaacaacg cggtctttgg caaaaccatg gagaatgtgc gcaatcacgt cgacgttaaa      5160
     cttttaacaa aatgggaggg aagatatggc gcggaggcaa tgatcgcgaa accaaatttc      5220
     cacagtcgaa gcgttttttc agagaacttg atcgcgatcg aattgcgtaa actcgaggtg      5280
     aagttcgaca aaccaatcta tgtaggtatg tgcatcctcg acatatcaaa gacatgtttg      5340
     tatgaatttc attacgatta catgtcacca ttgtatggcg agaaatgtaa agtaatgtac      5400
     acggataccg acagtttaat ttatcacatc gagtgcgacg acgtctacga tatcatgaaa      5460
     cgtgatattg aaagattcga cacgagtgat tatgcggttg ataatgtata cggtattcca      5520
     ctcgctaata aaaagatacc aggtttgatg aaggacgaaa acaatggtgc aattatgact      5580
     gaattcgtag ggcttagagc aaaaatgtac gccttgcgtg ttgatggaaa aaatgatacg      5640
     aaaaaagtca aaggcatcaa gagtaacgta gtaacaaaat cgataacatt tgatgattac      5700
     acacagtgtt tgcgagacga gactgaaatg acacgacagc agtcttgtat aagatcaaaa      5760
     ttgcataaag tatatacgat atccgaaaca aaaattgctc taagtccgta cgatgataag      5820
     cgatacattg tacccgactc taccgacaca ctgccatggg gacattataa aatatcgtta      5880
     taatacatat cttataaata aaaaactcat ttgttttgta taatatatat ttatatattg      5940
     taaataaaaa ttcatttact tctataataa attgtaatac atgtattgta taaagaaact      6000
     tgtattaaat ttattttaca acacgttact tttgtgtatc catgaattgt gcgaattatc      6060
     aaatcccaac catttaacat aaacctcgtt cccccttttg cctaatactt tttcaacgag      6120
     atacacgtcg gggtttacaa cgcgatgcaa ttcgtattcg tagaatcctc cagcgattga      6180
     ttttccacat gaatcttgca atagatacgt cacgggatta gttttctgaa ctttgatgat      6240
     cttaaacacc tccgtggtcc aatttggcgt ataacctttt tcaaatattg tcttgaattt      6300
     actcacacgt accgaatcgc ctactttgaa tcgtgcgggt gcagcaattt ttatgtgatt      6360
     atacactgtg gtcaagagtt tgtctgcgat tgcgggggta acatcgatgg gtcgcatacc      6420
     gatagttcga tgctttcgcg tattatacgc cgagacgaga cgtggtaaca agtcgagcca      6480
     tctataattg ccattatgag taaacatctt ccacatgtca tttttcaacg tgcgattgaa      6540
     ccgttcgacg attgatgctt tcattacaga atatgtcgaa tagtgattaa tatcgtgtct      6600
     ctttatgact ttttgtacat ttgcattata aaattccttt cctctgtcgg tctgcaaatt      6660
     tttcggacat cttccatcgt ctcgaattat cttttcgatc gctcttgcaa cttcgtctcc      6720
     actcttggtc ttgagcggta cggcccatgc gtgcttgctc agcacatcga taatagtgag      6780
     gatatagtgg taacctttgt tgaatcgcgt ataaggtcgc atctcgacta catctgcctg      6840
     ccataggtca tcgtacccgc gtactatgac acgtcttcgt ggaaaatttc ttctcgccgg      6900
     agcgtgcagt tcctccacta gccgctgctt ctcagaattt ttcttcttct cgaacatcac      6960
     gacacgcaaa taacacaaaa tttggtgtat attcttatct acgtactctc ggtgcgatga      7020
     gtaatcatca tttgtcgaag ctcgtttaaa ataatctgca cgtccttttg gaacgcaatc      7080
     aatttcttct cgatttcgtt ctgtcgatcc ttcaaaattt gtacactatg ttccacgtac      7140
     cgtttgttta caacgtcgcc atcatctacc ggtaacgcta cacgtcgaat tttgcgtgac      7200
     tttgcgtcaa agtcggctgc gaccacgcaa agagcgttat cgcgcacgta atttctgact      7260
     aatccactcc attggtagta cggttccgct ccgcttcttc cgagtgatgt cccaaacttg      7320
     ttgattggca tttcgacgct tgttaaatga ctcatttcct tgacacgcgg ttcaatttat      7380
     aatgagatca gcttcaacaa gttcctcgat aattgactgt atctcgttgt cgtgagcgtt      7440
     gtgaccagct tggcgcgaag cctcgagtaa tcggagacga tctacaagtt catttggatc      7500
     atcccaatgc acgtaatcga tggcattatc gtttagtgtc atgacacgtg gtatacctct      7560
     tccgactttt tggggtagaa ggggtgcgat tacatacttg tatttgtatc ctttattacc      7620
     cataactgga ttaagcatat tatgattacg tctatgcgcg tttgtcagta gcaaaatatc      7680
     tttgtatttc tgtttatctt cttcagtgta caattcatcg tcaggtactt ttttaaaaat      7740
     taactcgtaa agaccttccg ttcccaagta tcttattccg tttataaata tattgtcatc      7800
     tttgcttaca tcgaaacgct tatcaccaag catcatgcca tcgttggtga aataaacacc      7860
     gtaaacgtta tctatatcct tgtttccggt taaaacagct cccatgtact tttgtcctag      7920
     tggaccgaaa tgattttgca acgtttctag accttccgag gtttgtaact gacgtcgaac      7980
     agacatcacc agtgactcgt tggtagtttc gaaaacatct tcgacaggta aaatattgtt      8040
     cgaaggctgt tcatatggtg ttgcatgatg tgtgacatta atcggaacag aggtcatcac      8100
     tgatacgtcc gataaagcgt ttgatcgttt tcgtggagta gaagttatca gtgaatcatc      8160
     taaattttgc gaccgttttc gttttgtctc ccttgtcacg ttagactcca tcttatagtt      8220
     aggttcttca ccgccagtat tttcaacaat ttgaatcaaa ggttcgacaa tcggtttgaa      8280
     ctgtctttcc aaagcaatat cctcttccat cttacccgtt tttaaggcgc gatacttctt      8340
     gcgaattgaa tcgctcgttt tcgcaatctg ctttactatc ttctcgcgat ctctaatctc      8400
     ctcgttatta tccatgttcg taaacgttgt ctagtcgacg tatcaacaac aactaacaac      8460
     attatagtat cgcaaaatcg ttaaattctt ttctgtatcg tccattagca agcgtgctgt      8520
     ctttgtctat cactacgaaa ccatattttt gttgccaaca actgcgacac aattcacaga      8580
     aatcctcgta ggacatgtca gtgtttacgt gatcgttgta tacatgtttt agattggtat      8640
     catcttgttt aaatagaatc aacagatttg cgttgtcgcg tataagatgc ttgggtatct      8700
     ttgcatacgt ctgacagaga tagaagcaat cgacgtcagc gtgacggccc attgcaaagt      8760
     actctcttac tgtatcttgc ttgtcgcacg ccacgtcatc aaagataaag atggaattcg      8820
     gaagcgcttc gctcggtgga atgacgtcgc tattattgga gaatgtaaaa taaccaattt      8880
     cttctatcga tgttagtaaa ttttccaagt atcgatattt cggttgctgc agcgatttag      8940
     aatatatgta cacgttttca aagcgcacac cgtgcggact ctccagcaaa cttatcaaca      9000
     cgtttgtttt gccacaattt gacggtccac atatgatacc acgtatagaa gtgggtagca      9060
     tgtttccatg tttgcgtgtt ttcctttcaa gttgtacttt gtcgtctaaa ttaatcactc      9120
     tgatcgtctg cgattgtcgc acgaattgca ttttgtctcc ctacaacgac aataactgaa      9180
     aacggtatag aaaaagcgga tctatttata gaggagtacg gagcgaaacc gctcagtaat      9240
     caaaatgttt cttatcgtgt cagatagctg cgatatttac aatataacat ccgaacagtt      9300
     acaatatata ccgaaagttg ttttgctacg agaatttcaa aactgcatag atctcttgtg      9360
     ggacaagctg cccgagcata taaagacgga tttggaggtt cgaacctatc gtcgctgcgt      9420
     cgaacattat aaccaaccgt ggcaacgcac acacatcgac ggtccgacac cgttgataaa      9480
     gaattgtgac gaatgtcagc gagaggcaga ggtctgttaa atcgagcgat aaatgcgctt      9540
     cctttcgaat tgcatatccc cggatatcaa ttttgcggtc ctggaacgca tttagaaaag      9600
     cggttggcta gaggcgatcg aggaattaat atattggatg ctgcgtgccg cgaacacgat      9660
     atagcttact cacaaagcaa cgatctcgct aaacgacacg tagccgacaa tatactcgcc      9720
     gcaaaagcgc gaaaacgcat caccgcgaga gattcgactc tgggtgaaag agctgccgcc      9780
     gcagctgtct gggcggccat gaaggccaag acaaaaatcg gcatgggttt gaaaatgaag      9840
     aagaagccga tgaagaaagc aatgaataaa agaatacttc cggtagcgaa acgcggtggt      9900
     atcctaccta tcctgccatt gttgggagtt ctcggttcat tggttggtgg agcggcggga      9960
     gtcgccaagg cagtgaacga taacaaagct gcgcaacgtc aactagaaga attgaaacgt     10020
     cataatcgtg ctatggaagg tcatggactt tatctcgctc cgtacaagcg tggacgaggt     10080
     gcctcttcaa gaaaaaaaaa cgtcaaagag acgttaaaaa ttcctaaagg tataactacc     10140
     aacgtacaac tacaacaatt ggcaacgcgt atgcgcattc cgtattttag aggtgttttt     10200
     atgcgtacta ccttacctac aggagtacat cgaaacgaga gcggtatctt gaatttggag     10260
     ataatgctga gggatcaggt actcattggg tagcgtatgc aaagaggggg gatcgagcta     10320
     tttattttga tagttttggc aatcttcgac caccgaagga attggtacga tatctagaaa     10380
     agacatacat cgagtataat cgcacagcat atcaacggta tgatcaaagc aattgtggac     10440
     aactatgcct gcagtttctg aagggagttg acaatcaatt taagaaccga cattgcgttg     10500
     tataaagtca gtattcgatc aaacatgtca ctaacgttta cgttgaccgg taagagtagt     10560
     ctgctctcgg taagctactt tccagccata gatttgagcg atggtgatta cgaactcggt     10620
     ctggcagatt ttgaaacgta ccacgcgata ccgaatgtaa cattgtctaa taacaaattt     10680
     tactttgacc aagacgacaa aaaaattgtc attcccgaag gatcgtacga actgcatgac     10740
     ataagcagat atttaaaacg tgcaatatta caacaatatc ctcgtctcaa cgatgttgtg     10800
     aaaaagaaga tgctcgaaag agaagatgaa gggaacgagt atccactgat tattcgagct     10860
     aataacaata cgatgaagag cgagatcaag tgcgcttatc gaataaattt cgtcaaacct     10920
     gacaacattg gaccgctgct tggattttcg tcgaatcgta tgctggagcc gcaacaatgg     10980
     cacgaatcag acgtaccgat aaatatcgtc aacgtaaata ttattcgcat agaatgcaat     11040
     atgaccgctg gtgcgtacag caacgacaag tgcgtacata cgatacatga gttttcaccg     11100
     agcgtgccgc caggatataa aatatcggaa acgccgacgc aaatcattta ccttccgatc     11160
     atcgcacgga gcattacaga tttaacgata cgcattgtgg atcaagacgg ccgattgctc     11220
     gattttcgcg gagaggaaat caccgttaga ttgcatatac gcagacgaca gcgataacaa     11280
     gggtgttgaa tgaaatgcta gtgttgaacg agcaggtgaa acaaataaag gacacaattt     11340
     ttgaggcgac gactaagagt actaaatcat acggtaaaaa gaaactcaac atatccaacg     11400
     ttaaattttt aagatcatta ggattcatcg ttcgaaatga ttgatatctt aaatattgga     11460
     agtgagccgg tctttgacga tcgcgtcatc aagattgaga ctcacacgta caatccgtac     11520
     gcaaacacga cgtttggaca taacgatgaa ataagaatac ctatacaaca gcaagattta     11580
     tacaccttgc catgcgaaag ctttctctat gtcgaaggaa aattgacgac aaagaagaaa     11640
     aataatgaat cagtgacaac tcttggaaac aattgcgtag catttatgtt tgatgaaatt     11700
     cgatacgaac tcaatggtgt ggagattgat cgcaacagaa acgtcggaat aaccagtaca     11760
     atcaagaatt atgtatcgct gacgtatgac aaggcgctaa ttttgcgaaa cgcaggatgg     11820
     gacatttcat cgaccatatc ggaaggatac tttaattttt gcgtaccgct caatctgttg     11880
     tttggctttt gcgaagatta caaacgtgtg gttgttaacg ctcgtcacga attgatactg     11940
     atacgagcgc gcagcgacaa caactgtatg gtgggagttt cgacgatgga accggaaata     12000
     gaattattca aagtacagtg gcgaatgcct catgtaatgt tgaatgaaat caataaacta     12060
     tctttgttgc gagctttgga aagtgggcga tatctgagca tgagttttcg ctcgtgggat     12120
     ttatacgagt atcctttatt acaaagtaca accaaacatt cgtgggctgt aaaaacgtcg     12180
     actcagctag agaaaccgcg gtacgttatc tttgctctgc agacgggccg aaagaataac     12240
     gtgtctgaag atgttacgat attcgatgac tgtaaattga ccaatgtgaa actttattta     12300
     aattccgaat tttatccgta cgacgactta aatctagatt ttaacaaaaa tagatacgcc     12360
     atcctctttg acatgtatgc acgttttcgt aaatcatatt acggatacga ttgttacgaa     12420
     acgcttttca ccgtaggaac atttttgaca aaaggaccta ttgtggtcat tgactgctcg     12480
     cgacaaaacg agtccatcaa gagcgctact gtagatgtac gaatagaatt tgattgtaaa     12540
     gaaaatgtac cgccgaatac taccgcttat tgtctcatct tgcacgatcg cgttatcgag     12600
     tattgcccat tatccaatgt agtgcgcaag attatgtaaa ctgcaacgtt tgcaaatatc     12660
     ccctcttttt taatataaga aaggaataaa aatccgatgt atttgtcgat ggagcgtagt     12720
     ctcaaaggaa ttgttttttc gtcatgatcg ttccaacgtt tgcggatctg caaggattcg     12780
     tcgtcggaag gagatttgtc gtgaaggaag tggctgtgtt gagaaagggg acaattctct     12840
     ctcattatat ttttgcaagt cctataccat ggcatctcct tacaaaatcc gacaaatcst     12900
     tgcgcttcct ggttgattgc aaatcatcat ggcttgcgat gggaagacgg aatgattccg     12960
     tatagcatgg cggaacgttt gattacaaca gctgtgattg acatagaaga tgaagctctc     13020
     atatacgtta aaggatgtca gaagaaagaa tggttgacaa atatgctcga tagcgatgcg     13080
     agggatgatg tcatcatcga aaccttggat attgattata aagatttaga atcgttgaat     13140
     aatctagatg ttagcaatac ttttcgatgt gtaaaacatt cgaaacattg cgcgttacaa     13200
     aatgtattta aaatatttaa ctggtggtta caacgccaga aagaaaaatt tttaaaataa     13260
     aaaatattta aacattaatg tgttgtattc ctttacccta tccatgtata tattgtagtt     13320
     tagatgctaa atataagtat aaatgcaaaa actgctagct tgacacaaat gatagtacat     13380
     acacatatat aacatatgaa attgagatat ataacatatg aaattgagat atataaacga     13440
     aagagaccga gacttttgtc agtaattgag atatataaac ggaagagaga acgagacttc     13500
     tgaatctact gttagaaatt aaagatatta tggctgataa taatgttata ttaattaacg     13560
     atgaagaagt aatggcaaat aatcaaaacg aaatcgaagt gatagattta gtgaatgaag     13620
     aagtgatagt agcaaatcaa gaagaaattg aagtgattga tttggtagat gaagataata     13680
     ttgaggatga agttatggac attgaagatg aagatgacgg tgatgatgat aatgttgttg     13740
     atgacattga tgatgatgat agtgatgacg acgatgatgc aatgaatatt gatgaagaag     13800
     tgctcgaaga ctctgattat gacagtgatg atactgactt taatatgagt ttcaaacata     13860
     aactcttgaa tcaacgtgaa attaatgcag taaatgaact aagaagaatg tgccgcgtta     13920
     cattttacta ttcagcagga aattctagtt cgagattttg tacagaatgt tttgtgagaa     13980
     ttagagactt gtattcgcac attaatgttc ttcgtataca cgaaattgac tcttttggca     14040
     caatggaagg actattttgt accgagtgta gaactccgct atatcaaata atgttgtgtg     14100
     atatgtgtcc tatatgtgta aattaaaact atggagcaca taaatgctac atataaatta     14160
     taaaggtacg tatgaatatt tattttaaat ttacaataat ttttaaattt taaataactt     14220
     ctttgttttt atttgttata gtcagtgaaa aaagaagaca ttaacataaa tctcgcgatg     14280
     tcaacccgtg tttctaaaag ataagaaaga tgcaaagcgt atcatgtatc agcggcaaga     14340
     cgaaggagtg tcatccttaa ccgtcagtag acgttcagac tcgattcatc aagtattaag     14400
     tgcaagttct actgactgaa tactaagtgc gtgcgagtaa cttataaggt aaatattata     14460
     aaagaaaaaa atttaagtga gttaaataaa atataatatt aattgtgaaa taaaatcaaa     14520
     agatgaaacc gccaacgagc caagaaagcg tgaaagcagt agacggagtc atcccggagg     14580
     agtatccgga aacttacgag ccacttctgc tgggaacatg cgtaaaagct ataaactctg     14640
     ccagtgtcat ctacagagaa gatgacgctc cttttcgaag gatatgcgaa gactgctttc     14700
     atgcagaagt gcaagacttt aatcgtgttc gagtagcaat aacaaactgg cacacattat     14760
     gtaaagtagt gccagaaaat tatgaattaa aaagaaaatg ttttatttgt cataaacttt     14820
     taatggaata taatatagct tcagattgtc gcgagtgtat taaagagttt ataattaata     14880
     atgaaaaata ttattggtta gatgagatag atatattaca agacgaagaa aattaaattt     14940
     aagttactaa ataatatttt ataatatttt ttacatttta tattttatat gttatatttt     15000
     aaaatttcag tattttagaa tttattttct aacatattgt atatgttgta ttccatcata     15060
     ttacattctt aaattaatgt ttttttatat ttcgttatgt ttcgttattt atgtttaata     15120
     aaatatattt cattgaccta cgtaaaattg caagtttgta atttttaaca cgtgtccgat     15180
     aaaatgatct taccgtttta aagatatata tttcataccg tcgacctatg tggaatattt     15240
     tcgcatgtga tatctaattt cggagtgtat caaatgatat ataaagtaga taaaaaaata     15300
     aataatatca accataaaat taagaacaaa acttcgatta tagattgtga attattagcg     15360
     tacgcaatag ataatattgt acactatgca ttacatgacc aataaatgta tattatgata     15420
     aatattactc ggtttattct ccattcttcc tttcaattca gcggtttcag gttgcgctgc     15480
     gataacgagt cgcgtgccga cgcatcttgt cgcgaataat aatatcactc ataataataa     15540
     taataaatta ctaagtaata tttaaaaaaa tctcctttaa aaaaataatt aattttaaat     15600
     aaataattaa ttttaaataa aataattaat taaaaaatta aaattacaaa agatatcaag     15660
     acaaaacgag ataccttggt ggaaagagag agaacttaag aaaagaggaa ggaagagaga     15720
     agaggaagga agagagaaga aaaaatggta agagagagaa catgatgaca gcggcggcgg     15780
     cggcggcggc ggaccccgcc gtgacccctc gcttcgcgga ccccgcgcct agtgacgcac     15840
     ttccctcctc ccttgccccg cggaccccgc atccatcgct tatggagtgc cccgcgtcgc     15900
     ggaacccctc tgcccctcta cccccctcgg agctcccgag ttagaaccgg ccttatatag     15960
     ctact                                                                 15965
//
ID   Polinton-4_RPr repbase;    DNA;    INV; 9400 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   09-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   Polinton DNA transposons: consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-9400
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3330-3330 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 3'-end is not determined. A few copies in the genome.
XX
SQ   Sequence 9400 BP; 2868 A; 1977 C; 1835 G; 2675 T; 45 other;
     agtagagagg atttggcggt tctggcgcac ctaaaataca aaatggcggc catcccaccc        60
     ccctccccca accctacccc cacccctcct tattgaccaa tcatcgattt cgacgagggt       120
     ttaagccacg ccccctaccc ccaccccacc ttattgacca atcatcgaac tcgacgaggg       180
     ctttaggcca cgccccttcc cccaccccac ccttttaatc gaccaatcag cgaattcgat       240
     gacacccttt tacccccact ccttccccca cccttcttaa tcgaccaatc agcgaattcg       300
     acgacacccc tttaccccca ccctagccct actcctatca catgacacct acctttaccc       360
     ccccactccc accacctcta ggtcgtcgta ttcgttggcc tcctaagctc ctcctacaag       420
     atggcgtctc tcctaacagc tgtagtacac aagatggcgg acctcgtacc agctgatgac       480
     cacaagatgg cggacctcat acctccaccc ccctcgccca ttgatagaca ggaggggatt       540
     ttttttttta attattttta cttacctggg attcgatcct acaaccttcg tgctggtaga       600
     cacgtcatct gcaccagtcg gccacagtgg tagtctcgct tactctagtt ttgaatgttc       660
     tcttatgttt taacttggaa ttatttttta aaaaatctaa cccccctcac caagawtttt       720
     ttttttattt aaattacccc cactatcaca aaaatattsa aaaataaaaa tggataacct       780
     cactttaggt aataaaaaaa ttatttactt accccctcca cctggactgc ttccgctgct       840
     gatgacgcga cctacactca ctgaaaacta aacccgaact gacacttgga ctgcgatact       900
     agcattaacc ccccaccaca attacgtcac actctaacta gccaatagaa ttgcatcttt       960
     ttttccaaat gattacctct ctggacaggt ctctgtagca agccaccccc tttcccttcc      1020
     acatctttta tcatacctgt taatttatat atatgccaac atagctgaac atgctccaac      1080
     aagtctggac atgtagccag ctgtttgaac aggcaagtaa aaataatgat gactcatacc      1140
     attgtcatat cctcaacgag cacaaacatg ctccaacaag tctggacatg tagccagctg      1200
     cctctttcgc tttaaccgtt ctcttgttat tatttccgtt taccaactat acaaacctgt      1260
     atgaacatat catcggtgta gtcttaatat gtgtgattac ctgaacatgc tccaacaagt      1320
     ctggacatgt agccagctgc ctctttcgct ttaaccgttt tattatttcc gtttaccaac      1380
     tatacaaacc tgtatgaatc atatcgtcgg tgtagtctca atagatgaca tgtgtgatta      1440
     ccttgaacat gctccaacaa gtctggacat gtagccagct gcctctttcg ctttaaccgt      1500
     tttattattt ccgtttacca actatacaaa cctgtatgaa catatcatcg gtgtagtctc      1560
     aataggatga cacgtgtgat tacctgaaca tgctccaaca agtctggaca tgtagccagc      1620
     tgcctctttc gctttaaccg ttttttttgt tattatgaag ttaaaagtaa attgaacttt      1680
     gaacttatta ataaaatata aataagtttt aattaacttt tctttattta tcacataatt      1740
     tgtatatggc ttaatattgc tcaacttgca tgtctgagct tgccctgttt gaattggtca      1800
     gtaactaact gatatctccc acccttgggc atgacgtcac ttatagttag ccaatagcat      1860
     ttcgtgtttt tactaataat cgattatcat aatcgattct tctgatgata taaaagtcgc      1920
     tccgaattct gctgcggtca tacagtgttt agtgttctta gtgtcaacaa cttttccagc      1980
     atcctgcttt ctttgtattg taagtactta tttttattaa ctttttacaa atatatatat      2040
     attcatattt tttattagtt cacttttttg tatttcattt atttctaagt tttcaatttt      2100
     taatttcatt ttgtatagtt aattttactt cttgtatata tttmtttagt aatttaatct      2160
     tagtmtagtt tatattgttt attcattttt attaataatt tttaaatatt cgcgctttat      2220
     aaatatatat atatttgtat ttattatttc gtgttacgta ctattttatt aataatggag      2280
     tgtcagtatt gtggaaaaat atttatacgg ggggactata aggaacgtca tgaacgtgct      2340
     tgcgccgcaa atgagcaatc tcgtcaatgt ccaaattgta gagaaaggta ttcttctaga      2400
     aaaacgatgc ttgctcattt gcgacgctgc ggtactgaaa cactgacagt catggcaaaa      2460
     cgagctcgta ttgaggcagc tcaaggccat ttatatgaag tggagtcagc ctttgggagg      2520
     actcttcgaa cttttttcct tccaagttcc ggggcagtcg acgcaatgga atttctaaca      2580
     ggtcagatag aaacattgcg tcgtctgctt caggaagtaa tggcagacag cgattctccc      2640
     ctgaaatata acttggtctt ggaggcgacc tttgaaaaca tcaaaggtga aacttgtgat      2700
     cgcgccttca agactaagaa caaagtaatt tatgaagact cctccatcga cgactctctt      2760
     aatgagagct tcaagaagat tatagtagag atggaggagt caacactaaa ggggagcggc      2820
     tggtgcctaa aagagttcga cggagtcctc ttaagagtaa acmgatttmm ccctctsggg      2880
     gctccagctt cattcctctt cctcctcaca ttgccaataa aaaagccgtc atcaatgtgc      2940
     aaaatactga tgaccggtgt ttcmagtacg csatwctctc ccgcctcgtc acaaagaatc      3000
     cacaacgcgt tagtaagtat gmtaatwtag agcacaggta caattttgac tgcatttcct      3060
     tccccactcc tctccatgag gtgaaaaaat ttgagaagta caacaacatc acgatmaatg      3120
     ttttcgccct tggagagaaa ggaaacgtgt accctttaaa ggtggtaaag caggagaagg      3180
     aagaccatcg cgatctcctt ctcctgactt tagagaatgg acggagccac tacacttata      3240
     ttaaagattt taatagatta gtggtccgtc aaattactga tcatgaacaa agggtacacg      3300
     tttgtaagcg atgctttacc catttcaaca tggatggtga aagcatcgct gagcgggtga      3360
     aggaacatat ggagtattgt ggagtaaata gaccgacccg gattgtattg ccaacatgca      3420
     atgacgatgg gacccctcca actgtatctt ttacgaaaat acaaaatcag atgaggattc      3480
     ccatcgtcat ttatgctgat tttgaggatt aaagaaaatg ataaaacaat ccgtcgcaac      3540
     aacccctacc agagccacct cctatgagct tctgcaccta tgtaaggttg cagaagacat      3600
     actcgccact gctcccgccg acttccctgc ggagctacat ctatacgggg aggacccgcg      3660
     agaagtttat ggctacataa aggcggtggc gagaaggtgg ccggtgtctc cataagcggc      3720
     catgctaccc ctgacaccat cccagctgga agccttcccc aatgtcacct ctgtaacctt      3780
     cccttcccga taaagtggcg gatcagatca catcactggt gtgtatcgtg gtcctgctca      3840
     ctcttcctgt aatatccttt accgcactcc tcgtttcctt cccgtcttcc tccacaatct      3900
     gagcggctac gacgcccact ttattgttcg ccagttgggg tatgactcaa gtcgcattga      3960
     cgtcatcccc aacagcgaag agaaatacat ctcatttagc aagcaagtgg gcgctctaac      4020
     cgtcagattt gtggacacct tccgtttcat gtcttccagc ttagataggt tgtccaagaa      4080
     tttgcccaac aataaattta tagatacggg caaattcttc cccgccgaca agatggatct      4140
     ggtcgtaaga aaaggagtgt acccctatga ttacacagat tcgttcgaga aacttaggga      4200
     gacggttcta ccccctaagg aggcattcta tagcaccctt aatgaatgcc acatctcgga      4260
     cgaagactat cagcatgccc agtcagtttg ggaggccttt gaaattagaa ccctaggggg      4320
     gtacagcgaa ctctacctta aggtagacgt aatgctcctg tgtgacatct ttgaaaattt      4380
     cagggatgtt tgcataggag catattcgct ggaccccgcc tggtatttca cggccccmgg      4440
     gctggcwtgg gatgccatgc tgaagtgtac aggggtacaa ttagaactcc ttacagatta      4500
     tgaccagctc ctaatgattg agcggggcat aaggggcggc atttgccaat gcagtcatcg      4560
     ctatagcaaa gccgataata aatacctcaa cccagatcgc gaccccctta aggaatcgaa      4620
     atacattgcc tacctagatg caaataattt gtacgggtgg gcaatgtcaa atccgcttcc      4680
     ttacggggct ttcgaatggg tatcagatcc ggatactcta gactggggca atatgcagga      4740
     agatggtccc ttcgggtata ttgtcgaagc cgatattgag tatccggccg agttgcacga      4800
     actgcacaac gatttccccc ttctcccgga gaatagggtg cctccgggac aggctaataa      4860
     gaaattgttg gctccattga ccaacaggga gaaatacgtt gttcacttcg tcaacttgag      4920
     gcaggctatg ggtttaggtc tgcggttggt acgcgtacat agagcgctgc gattcaggca      4980
     gtcccgttgg ctwmgttcct acatcgacct caacactcaa atgagacaac aggcgacgaa      5040
     cgacttcgac aaagacttct acaaacttat gaacaacgcc gtctttggaa aattcatgga      5100
     ggacgtacga aaacgaacga aaatagaact ggtaaccgac gaacgtagaa tacggaaact      5160
     aatagcgaaa cctactttta aggacaggac gatctacwca gagacgctgg ctgctgtaca      5220
     tctggacttt gaacagatca cgatgaacaa accaatttat gttggaatgg ccattcttga      5280
     tctgtccaaa gtccggatgt acgacttcca ctacaataca atgctaamma gatacggwmc      5340
     tgacaaacta aaactwttgt acacagacac tgacagcctc atktackwag taaagacgga      5400
     agacttttac gaggacataa ctacaatgat ggacgaactk gacaccwsag actaccctga      5460
     cggacatcca tgtaacagca acagaaacaa gaaggtgttg gggaagttca aggacgaggc      5520
     cagcggagag cctgtatctg aattcgtggg cctccgcgca aaaatgtacg cattacgcat      5580
     ccggggacaa gagttaaaac gggsgaaagg gataaaaaag gcagctgtgg aaaagaaaat      5640
     aacttwtgat gattatgtgg ctgccctgtt cgacggaaaw gagtttacca cctcttttag      5700
     aacaatcatt tcaaaagagc acaagctctt ttccgttgaa cagaaaaaag tatctmtttc      5760
     gccccacgac gacaaacgac atctagtcga tcgtgttcat actcttgccc atggccactt      5820
     tgctatagcg awtgtacctg tgtagcctcg tttctaggtg ttgtatatag tgtacatatt      5880
     agtcaagtag ttaggttagt ttaaggtggt ggtcatttta tttatttatt tatttattta      5940
     aattatttaa atttcttaat aaaacattat ttttatttat tcattttatt atgttttttt      6000
     tttctattca ttcaaatttt tttttaagtt catttatttc actttttttt ttcatttaaa      6060
     tttactctaa atttagaaaa aaaaataaaa aaaaaaaata aataaataaa taaaaataca      6120
     aaaaaaggtg gcgggaaatt ctattttata tacttttttt tatttatagt tagtatgcat      6180
     gctttgtaaa tatttgatct taattttaat atattattta tttattttta cttttttttt      6240
     attgttattg ttattgttat tttatttatt atatttactt attatttttt tttttttgta      6300
     taatgagcat gagttatgta tatatatata tatatataag agagacggga gagcgattct      6360
     tgttattctt catcatgcgc ttgataaagc aacatcacac cctctcagtg caaaaccttg      6420
     acgacagggc ctcttccaag aaatgttcca aacacggtcc gcttttccca gattccatta      6480
     gatgtttaat atgcggaccg tctaattgtg ggaaaactaa cctgatgttg agtttaatat      6540
     acgatccaaa ggggttgaga tatgaaaata tatatttgtt tgcaaagtca ttacaacagc      6600
     ccaagtaccg gaagctagct caaattttag aacctttaaa agatattggg tactttgaat      6660
     ttgaagacaa ttctcaagtt cccccaccta aagaggccct gccaaattca ataattattt      6720
     tcgatgatat agcatgtgac aagcaagata atgtaagagc ctatttttgt atggggcgcc      6780
     acagtggagt tgatatattt tatctaagtc aaagttatac tagagttcct aagcacttag      6840
     taagagaaaa tgcaaatttc ctaatactct ttcggcaaga tgaattaaat ttgagaagaa      6900
     tttacgatga ccatatcaat tccgacatgg aattcaaaac tttcagaaaa atttgccact      6960
     ggtgttggaa agaaaataga tatggttttc tagtgttgga caaagataga cagattactg      7020
     agggaaggta tcgaaaaggt ttcgaagccc ttgaagatca ttgttcactg agccatggag      7080
     aggtsaacta gtgacgtgat gcgtggaata atmgaaacca gaaaggmgat tcaagaaaag      7140
     tgwaatttwt tgaagagaaa cagagaagag amcgatgaat atttgaaaat gaaatatcaa      7200
     cctttattga gtccattgaa gcattggtgg aaaagcagga aaagccacca cttgaataaa      7260
     acaatctcct aaaccggaag tagctacttg tgaaacaccc cttccacctc caaagagact      7320
     aaaatttctg aggctggaat cggctacaac accgccgtca agattaacaa aaacatggca      7380
     tgaagaactt tcaaccccaa agcgaccgga agttctaaag ttatcttctt ctgcttctgc      7440
     tgaagcaacc agcccgcttc aagaggtacg agaacaagca caaacgcccg aagggaagga      7500
     aatttcagca aaatatttga aggaagttgg agaaatgtcc tcaaaatata tcaaaaaatt      7560
     tattaaaaat gagaccaagg acttggatat gatatatggt gtagtttatg acggccggag      7620
     atttagtatt ggtgacwcag tggtctccat cagcaaagat attctatctg ttggtgataa      7680
     tacctatttc ggcacaccag gtcttttcga gttattattc ttgacaaatc caaacttgtc      7740
     tatggtgaaa aagacggatt atatcaatta taagagcata ctgcaacaga cgaacgctca      7800
     tagagaaggg cacagccctt ccggaccaat taaagttctg aacacaaaca tgaaatacaa      7860
     gaatgtgatt tcaaaattgt tttcaacaaa aagaggtgcc ggatatgtag atcctaacat      7920
     gcttgtagat cgattaagaa gcttacttgg caccaacaat gccagcgcgg aaataaaaag      7980
     tattgaagcc cagctgagag atggaggtat aatagcgtag tgtggacatg agcaagcttc      8040
     atttcatcat ggcctctgtt aaggaacaga ttgtaaacga gttgcataga ccagcaagaa      8100
     gagtgttcaa gagaagagca gtccttctga agggcttaga tgacctatgg caagccgacc      8160
     tggtggaact aataccctat gctagattca ataaaggtca caaatatctg ttgaccgtga      8220
     ttgattgttt ctccaaatat gcatgggcga tccctctgaa gaataagaca gccctggaag      8280
     tgagtcaagc attcgagaaa gtattagccg atcggaagcc aaacaatttg caaacggata      8340
     atggaaaaga gttttacaac aagatatttg gcaagctgat gaacgtgaac ggtataaatc      8400
     actattctac ctatagtaac ttaaaagctt caatagtgga gagattcaat cgtactctga      8460
     aagcggcaat gtggaaaaaa tttagtctcc aaggatcgta cgactggtta accggcatta      8520
     aatcgctagt gaacaaatat aataacacta aacacagaac gattaaaatg gcaccggctt      8580
     cagtacgggg aaaagaaata gaagaacagc tgttacgtga agtatatgcg aagaaaactt      8640
     tgaaaaacgc cagcattccc aagttcaaag ctggtgatca tgtacgcata tccaaatata      8700
     aagcgcaatt tgctaaaggc tactgccctt catggtctac agaaatattt aaagttgctg      8760
     aggtgaaaat accataccgg tcacctatca tctgaaagat tataaggggc aatggaggtt      8820
     tctatcaaga ggaactgcag ctggccaaac atcccgacag ttacctagtg gagaaggtta      8880
     ttaaacggaa aggtgataga attttggtga aatggttggg cttagataat tcacacaaca      8940
     gttgggagaa tgttaaaaat gttcatatat aaagccagaa acaactaaca acgttttagt      9000
     ttatcatgag acgtgctaaa gataagaaga aaaagaagag aatcatcccc actcctagac      9060
     gaatgggtgg caaatcttca aaactgagtg gwaaagctaa acgaatgctg gatacgctac      9120
     ctcgcctgcg gctaagtaat tttgatctaa ttaagttggc gaaatcaaat aaaattcctc      9180
     atttcagagg agtattcatg attgatgaat ttccaaagaa accttggaaa aatgaacgag      9240
     ccatttttaa tttggatagc agtgttggca gtggtactca ctgggtttgt tacaagaaga      9300
     gaggagaata tgttcaattc ttcgatagca gtggtgccaa tccccctkct gaatttgtcc      9360
     gatatgtaaa gggaagccga atttcatgga acmggaagca                            9400
//
ID   Polinton-4_TCas repbase;    DNA;    INV; 10523 BP.
XX
AC   .
XX
DT   03-MAY-2012 (Rel. 24.09, Created)
DT   03-MAY-2012 (Rel. 24.09, Last updated, Version 1)
XX
DE   DNA transposon from the red flour beetle genome.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-4_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-10523
RA   Jurka J.;
RT   "DNA transposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1705-1705 (2019).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..4087
FT                 /product="Polinton-4_TCas_1p"
FT                 /translation="MSDTVSSLAKRSINLIREYISKIKTLDEINSFSKYIN
FT                 RSVKIVSKALINKIHETNIHENPHSLEASLAHLKYYRLKLKKIKKDLLNNK
FT                 SSKVGQGLSNVPKKTFGQKVLWEDLNSCFKGRIRSGFISNIHIKDPAIFLT
FT                 RAYKSFVLKIKKELAKSMLKVNVVFSGNFIQPSTLEIDLKTFATRNNHIDS
FT                 TTNIREWYHENVVSVILNKLESFAEKDSGWALYEILGLKVNINQYDPIKFG
FT                 NNSSFVEVPNFIKKKRCIINVQNNDQFCFLWSVVSALYPVKNNPHRTSSYP
FT                 NFENVLRYDNISFPITIRDIEKFEIMNNLSINLYCIEEKNKIFPARLSTYN
FT                 KNNDKNIPTINLLMLPTNNMDEEETHHNKKLYYHFVWIKHLSRLLSHQLST
FT                 HEHKTFICERCLNYFTTEDILTKHKIHCQKLNQYSVSLPRDTSLKFKNHLY
FT                 KEKVPFVIYADLESILVKCSQIDNNIHSKTIPYQKHIACSIAYYLKCSYDD
FT                 SLSKFQLYRNQDCIQWFVKELKDIAEQCDKIFKNKLPMEKLSYDQERSYKE
FT                 SNICHICNKTIESDQIKVRDHNHLTGKFRGPAHQRCNLNYQDSYTIPVVFH
FT                 NLSGYDAHFIIKELSTAFAGNIKLLPINKEKYISFSKSVGGTDVTFRFIDS
FT                 FRFMSKSLDQLSSNLKAEQKIITRKFCKTNEEFNLLIKKGVFPYDYVDSWD
FT                 KLNETILPSKKDFYSTMHGSNISEDSYKHAETVWQTFKIQTLGEYSDLYLR
FT                 TDVILLADVFETFRETCLNTYKLDPLHYFTLPGLTFDAMLKSTGICLELLS
FT                 DIDMIMFIERGIRGGVSQCSNRYAKANNHYMKDGYNSNEELSYLMYFDVNN
FT                 LYGAAMSQYLPYGNFRFLEDFNITEILNTSDTSNDGYIIECDLEYPTPLHD
FT                 LHSDLPLAPQHLKPPNSKSKLEKLLLTLFPKINYIVHYRNLKMYLRLGLKI
FT                 TKVHRVLTFNQSPWLKEYIDLNTRLRQQSQNEFEKDFFKLMINAIYGKCME
FT                 NVRKHKDIRIVTRWDGRYGMRDLISKPNFHSSVIFEEDMSIVEMNKLNVVL
FT                 NKPIYVGFCILDISKIFIYEFHYDYIKNKFGNNAKLLYTDTDSLIYHFKTE
FT                 DIYKNIKEDIHRFDTSDYKLDNKFNIELKNKKCPGLMKDENHGKIMLEFVG
FT                 LRSKMYSYTVDSDTEDEEHDYDEVGPAIKRKKFVKKSKGCTKSSIKHITFN
FT                 DYKKCLFDLDIFRSTQRLIRSKKHSVYSIKQEKVVLSPYDDKRILLRNTTD
FT                 TRPWGYAINPT"
FT   CDS           4340..5125
FT                 /product="Polinton-4_TCas_2p"
FT                 /translation="MEHQQCQEEESTENLFIKNRCFHIEYEEYEAYRHVQE
FT                 INLYKSIKKYHKEQPMVRWLLKKSNCIISDNAWLWFARAYEVPRLIDLYLL
FT                 VEKKLEMDKYIKELMNLLQQTNRIYINFNEMDNILTKQTKQFKFYFFELLR
FT                 NSSDSLADDELSKYYLVENIKNNYKTINECINTFVCEAAYLANYKPLRSFF
FT                 GTLFLFDLSFKFNPLENQRHQDILDWLKKNIRKGEENPEAHLGWTTGADSA
FT                 RWPSMKLTDYKDTYDLLCILT"
XX
SQ   Sequence 10523 BP; 3642 A; 1588 C; 1628 G; 3647 T; 18 other;
     gctattttta gttcatgatg tcatggttat tttaagttca tgaggtcact gttattttta        60
     gatcatgatg caatatttaa tcagtataaa tatgagggtg aaagcgtgaa ttttaacagt       120
     cttcagacaa tcttcataca gtgaaaatac aagttgtgat taattcatat aattattgtt       180
     aacagtcttc gtgcttcttc gtatagtgaa aatacaagtt gtggataatt cataggtata       240
     attattgtga caaaagtgaa aaaacgtagg tatgtctgac acagtgagct ctttagctaa       300
     acgttctata aatttaattc gtgaatacat tagtaaaatt aaaactttag atgaaattaa       360
     ttcgttttcg aaatatatta ataggagtgt taaaatagtt agcaaagctt tgatcaataa       420
     aattcatgaa acaaacattc atgaaaatcc acattctttg gaagccagtc ttgctcattt       480
     gaaatactat cgactcaaat taaaaaaaat taaaaaagac ttactcaaca ataaaagcag       540
     taaagttggt cagggattat caaatgtacc gaaaaaaaca tttggtcaaa aggttttatg       600
     ggaggattta aattcttgtt ttaaaggaag aattcgttca ggttttattt caaatattca       660
     tataaaagat ccagcaatat ttttaacacg agcatataaa agttttgtat taaaaattaa       720
     aaaagaatta gcaaagtcaa tgcttaaagt aaatgttgtg ttttcaggta acttcataca       780
     accatctacg ttggaaatag atttaaaaac atttgcaact agaaataatc atatagattc       840
     aacaactaat attagagaat ggtatcatga aaatgtagtt agtgtaatat taaataaatt       900
     agaatcattt gctgaaaaag atagtggttg ggcgttatat gaaattttgg gattaaaggt       960
     aaatattaat caatatgatc caataaaatt tggaaataat tcaagttttg tggaagtacc      1020
     gaactttatt aaaaaaaaac gttgtataat aaatgtacag aataatgatc aattttgttt      1080
     tctttggtca gttgtgtctg cattatatcc tgtaaaaaat aatccccaca gaacatcatc      1140
     atatccaaat tttgaaaacg ttttaaggta tgataatata agttttccaa taacaattag      1200
     agatattgaa aaatttgaaa taatgaacaa tttatcaatt aatttatatt gtattgaaga      1260
     aaaaaataaa atatttccgg cacgtttaag cacttataat aaaaataatg ataagaatat      1320
     tcctacaatc aatttactca tgctaccaac aaataatatg gatgaagaag aaacgcatca      1380
     taataaaaaa ttatattacc attttgtatg gattaaacat ttatctcgcc ttttatcaca      1440
     tcagttgtct actcatgaac ataaaacatt tatttgcgaa cgatgtttaa attattttac      1500
     aaccgaagac attctaacca aacataaaat tcactgtcaa aagcttaatc agtattcagt      1560
     gtcattaccn cgcgatacat ctttgaaatt taaaaatcat ctttataagg aaaaagtgcc      1620
     atttgtaatt tatgctgatc tcgaaagtat tttggtaaaa tgttctcaaa ttgataataa      1680
     tattcacagt aaaactatcc cttaccaaaa acatattgct tgtagtatag cttattactt      1740
     aaagtgttca tatgatgact cgctttcaaa atttcaatta tatcgtaatc aagattgtat      1800
     tcagtggttt gttaaggaac taaaagacat tgccgaacaa tgtgataaaa tatttaaaaa      1860
     taaattaccc atggaaaaac ttagctacga tcaagaacgt tcatataaag agtccaatat      1920
     ttgtcacatt tgtaataaaa ctattgaatc agatcaaatt aaagttcgag atcataatca      1980
     tttaacggga aaatttagag gaccggctca tcaacgatgt aatttaaatt atcaagattc      2040
     atataccatt cctgttgtgt tccataattt gagtggatat gatgctcatt ttattattaa      2100
     agaactgtca acagcttttg ccggtaatat taaattacta ccaataaata aagaaaaata      2160
     tatatcattt tccaaatctg tgggaggtac tgatgtcact tttcgattta tagattcgtt      2220
     tcgttttatg tctaagagtc ttgatcaact ttcatcaaac ttaaaagctg aacaaaaaat      2280
     aataacacga aaattctgta aaacaaatga agaatttaat ttattaataa aaaaaggggt      2340
     atttccatat gactatgttg acagctggga taaactcaat gaaacaatat taccatcaaa      2400
     aaaagatttt tatagtacaa tgcatggatc taatatatct gaagatagtt ataaacatgc      2460
     agaaactgtg tggcagacat ttaaaattca aacattggga gaatatagtg atctatatct      2520
     acgtactgat gttattttgt tggctgatgt tttcgaaact tttcgagaaa catgtttaaa      2580
     tacttataaa ttagatccac ttcattactt cactcttcca ggattaactt tcgatgcaat      2640
     gctgaaatct actggaatat gtttagagct attaagtgat atagatatga taatgtttat      2700
     tgaacggggt attagaggag gtgtttcaca gtgtagtaat agatacgcaa aagccaataa      2760
     tcattacatg aaagatggat ataattcaaa tgaagaactt tcatatctca tgtattttga      2820
     tgtcaacaat ctctatggcg ccgcaatgtc tcaatattta ccttatggta actttagatt      2880
     tttagaagac tttaacatta cagaaatttt aaatacatca gatacttcca atgatggtta      2940
     tataattgaa tgtgatttag aatatccaac tcctttacat gatttacaca gtgacctacc      3000
     tttagcacca caacatttaa aaccaccaaa ttccaaatca aaattagaaa aattgctttt      3060
     aacattgttt ccaaaaatta attatatagt ccattatcgc aatttaaaaa tgtatttaag      3120
     acttggttta aaaattacta aagtacatcg cgtcctaaca tttaatcaga gtccatggct      3180
     taaggaatat atagatttaa atacacgctt aagacagcag tcacaaaacg aatttgaaaa      3240
     agattttttt aaactaatga tcaatgctat atatggtaag tgcatggaaa atgtacgtaa      3300
     acataaagac attagaattg taactaggtg ggacggtagg tacggtatgc gcgatttaat      3360
     ttcaaaaccc aattttcata gttctgttat atttgaagaa gacatgtcga tagttgaaat      3420
     gaataaatta aatgtggtac taaataaacc aatttatgta ggtttttgta ttttagatat      3480
     ttcaaaaata tttatttacg aatttcatta tgactatatt aaaaataagt ttggtaataa      3540
     tgcaaaattg ttgtacacag acaccgatag tttaatatat cattttaaga cggaagatat      3600
     ttataaaaat attaaggaag atattcatcg ctttgatact tccgattata aacttgataa      3660
     taaatttaat atcgaattaa aaaataagaa atgtccaggg ctcatgaaag atgaaaatca      3720
     tggcaaaatt atgcttgaat ttgttgggct tcgatctaaa atgtattcct atacagttga      3780
     ttcagacact gaagatgaag agcatgatta tgatgaagta ggtccagcta taaaacgtaa      3840
     aaaatttgtg aaaaagtcga aagggtgcac aaaatcttca ataaaacata ttacatttaa      3900
     tgattataaa aaatgtttat tcgatttaga tatatttcgt agcacgcaaa gactcattcg      3960
     atctaaaaaa cactctgtgt attctataaa acaagaaaaa gtggtcttaa gtccatatga      4020
     tgataaacgc atattattaa gaaatactac ggatacaaga ccttggggat acgctattaa      4080
     tccaacgtga aatatagagg agcggtatat gaaacaaatt cttaaaaaaa ataattaata      4140
     aataaataat gaaacgatac ataaatttac tacttggtaa tccaatgtga aataaaggaa      4200
     agtgatcata cgaagaaaaa gaaggtaatt acatccgatt agaattgcac tgtcttatgt      4260
     acatatataa catttatatt atatacatac agatgtatat atgacagtgc aattctaatc      4320
     ggatgatagt tgtagcaaga tggaacatca acagtgtcag gaagaagaat caacagaaaa      4380
     cttatttatt aaaaatcgat gttttcatat tgaatatgaa gaatatgaag catatcgaca      4440
     tgtgcaggag atcaaccttt acaaatcaat aaaaaagtat cacaaagaac aacctatggt      4500
     aagatggctt cttaaaaaat caaactgcat aatttcagac aacgcttggc tgtggtttgc      4560
     acgagcatat gaagtacctc gactgatcga tctatatttg ctagtggaga aaaaactaga      4620
     gatggataag tatattaagg aattaatgaa tcttttacag caaacaaatc gaatatacat      4680
     taatttcaat gagatggata acattctaac aaaacaaact aaacagttta aattttattt      4740
     ttttgaattg ttaagaaata gttcagattc tttggcagat gatgaacttt caaaatatta      4800
     tcttgttgaa aacattaaaa ataattataa aactataaat gaatgtatta atacatttgt      4860
     ttgtgaagct gcttatttag ctaattataa accattaaga tcattttttg gaactttgtt      4920
     tctgtttgat ttatctttta agtttaatcc attggagaat caaagacatc aggacatttt      4980
     ggattggtta aagaaaaaca ttagaaaggg tgaggaaaat cctgaagcac atcttggctg      5040
     gactactgga gcagattcag cacgttggcc ttccatgaaa ttgacagatt acaaagatac      5100
     ctacgatttg ttatgtatac ttacgtaacc tgtataatgt actgcagttt tgtgaaataa      5160
     aacaatgtat aagttttgta tgtgttttat taaacaactt tatcatacat aataaaacta      5220
     aatctaagat gaaaaacaaa agagatatta ataatattaa attagtagct acactaaatt      5280
     gtattaacaa tatcttgagg tgccgatctt gagagagtct tgagatatcg aagataagca      5340
     tacattagag aaaacaaaac acaaaaataa ataacactaa aaataaatga atacatttta      5400
     aattagcaca ctacacaaca cgaataacac cttgagctgg aatatatttc gctactctat      5460
     catgtagaat tagacaatga gctgtcgtct tccctggtat gttggttctg gtctcaaact      5520
     cgagtcggat ggaaacagga cttcttttga gcatttcact ctgcttggtg caatcaacaa      5580
     ctactattgg tgcaatggtc ttgaattctt caggcgtgaa gattggttcc cccactttat      5640
     ccaaaaatga tgcttggaat tcaataaaca tttcatataa tgcggcaaag gaattattgt      5700
     tgaaattcaa atttaggtta tcatatggat acatttcgtc gttgagatag actttaacgt      5760
     ttctcaaatt gcagtgatcg aattgactgt aatctttgga aagttgattt tttctatcgg      5820
     tttgaagtcc gaaaaatata tattgtggtt tctcgattga tgttttaata gaccatgtat      5880
     gtcgctgagt ttgtggtaac agaggatatt catgcaattc tctgcttcta aagggaacat      5940
     ctagttcacg attctttgat aacgtatcaa ttagacgtaa tcgttctgca tccgaaactg      6000
     ttatatgagg cattttccaa aagatttttg aaatgttaat tttcacgtta tgtactgttt      6060
     catcgttaac aactagagca tttagatcag tattgcttcg aacaagaaca agttcttggc      6120
     gaacattcaa tattattttt cgaaaatctt cacacaaacc caatattagt ctcaatggaa      6180
     taactacatt aaagtatcca gaatcttgat caataattgt tgatggagat ttgggaaacc      6240
     atccagcatt ttgaagagca atactttcat tagtattgta cgttgcataa cctttcataa      6300
     ttgatgctaa accaggattt cgtactctat caactacatt accagcaatc tcatatctta      6360
     cttcatcaaa cattaacatt ataccattat tagcaaattt aacgtttggt gaaattatgg      6420
     tttcatgttt atcatttgtt gcgattactt ttccttcaat atacaatgaa ctcaaccaag      6480
     gaagtgtata tacatcttga tgttcgattg gtaatcgtat ttcatcattc aaattgaaag      6540
     aagtggatgc gtatggttga tgcgtacgtt tttcagcata acttattgat gtatcaaaaa      6600
     cagctttttc atttacattt aatatttcaa aattcattat ggaaatttat ttaaatacac      6660
     aacgtaataa tagacgcaca cttagtttac actaatacag taaaaccgag agatttaaga      6720
     aagttcttgt ttttcgatgt taatcgtttt agtctacgat gtcgactaag tgatttaatg      6780
     tttgttgacg tatttataca atttttattg acattaaacc gtttacggta ggaatcaaaa      6840
     actaatccca taattttttt ttttgtgttt tatgttgaga ggagcttttt aagatgcaac      6900
     cttaccgtga tggcttcacc acgaaaattg actacatttc catcttgatc agttatttta      6960
     agtaccaata aagaaatttc atttcgatta attggtaaat agnttacatt ggttggcgct      7020
     tctacaattc gatacccggg aggtacagtt ggaaaaaact catgtaaaac atgtactgct      7080
     tttccatttc tatatgaaga cgataccaga ttgcaatgta cgcataaagc gtttacttta      7140
     tgaattttag ctggcaaagg agagatgtgt tttacattag gttttaacac agtngatgta      7200
     aagcctaata tactggctat ggtattttct ttagtgaaat caatcgttat tgttgatttg      7260
     atttctactt ttaacgtatt tgtattcgat tttattgata aaataggtgc tctcctttca      7320
     tgaatgttac tatcaactat tttagtagaa tctttatcaa caagtattat gggattaaca      7380
     ttactcttgc tattcttttc ttcatcttgt tgttggatat gataatattt tttaacaatt      7440
     tctttattaa gatatgtatt aatatcatca atttcataag atccttcagg tatttctata      7500
     catacctctt cattatcttc acttacatan aagaatttat tattggtgtg atcaatattc      7560
     ggaaatgaat tataagtttg taggttagtt antccaatca cataactgct gtcattttct      7620
     aangctattg atggactata ttgagatgtt agaantgaac tgtttccagt taaagtaaat      7680
     gtcattgaca ttttattgca ctggtatata ggccantaga ggtagcacgt attaaacaac      7740
     cttgctgacc acaaggtaat gaatagtatc agtgagtgcc tctgataatt ttacgtcttt      7800
     aaatactccg tttacaaccg attgtttgtt acgttgatac gcacattttt tgaaaggtcg      7860
     ttgtgggcgt tgcaaggttt tagattatac agcaagttac aactacgttt caccttgcag      7920
     agcaatatga gaaggaaatg cantnngaga atnncttgta tttgtcgttg tngttgttgt      7980
     acnagaattg aaggcataga tgtccacaat taaccgtacc atatttttga attngctcat      8040
     gatngtacag gatttnacat ggtccattgc tttctaaata tttaactagt tctcgcggtg      8100
     gttgaagatt accatgacta tcaaaatatg tagcttctcg cctacgtttt acgtaagctg      8160
     tccaatgagt acccctacca ctttcatcat ctaaatttaa tataccacat tcattgattc      8220
     gtacgttttt aggcaacaaa tctctcataa aaacacctct aaaattttga atttttaaca      8280
     ttttacaata tttacacaga tctacatcag taagaggacg tctgggaagc tttatcggta      8340
     tttttttgga aattttgaac gatctaaaaa aagaccgaga cctgttttat atggtttcaa      8400
     ataaagacca tttccatctt tgttctttcc taatgcaacc gcttccattg cctgattatg      8460
     tcgtttattt tctttaagtt gttcattagc aaccttcgcc tggttgactg ctctggcaac      8520
     ggctgctgca ccaccaccca aagacccgag agcccccaaa gcagcaaata ttggaataag      8580
     aggcagtgca ccacctgtct tcggtactga aatcactctc tttggatgta cctttttttt      8640
     tccccgaagc tgttttacag cttttattgc tgcacctatg gcactcttca tatcatcaaa      8700
     ttttccatta ttcaatgtgt ttttcgcttt acttattaaa tcactaaatt taattaatcc      8760
     ttttcctgat ttcttcactt tgccaattcg tcttctatgt ttttgcattt tattattagg      8820
     acatcccatt ccaagtttta atttggcact cattgctgtt gaaactccta aagcagcaaa      8880
     tttctcacca atagaagcgt caggggcacg tcttctctct ttcgcgcgtt cgagtagaat      8940
     acgatcagct ttatgtctat tttctaaatc ttgatgttcg ttataagcga tatcgtgttc      9000
     tctgcacgct tcgtctaatt tattaatacc acgatctccg cgctctagtc gtttttcaag      9060
     tttggttcct ggaccacaga attgataacc aggtatgtgt aattcgaatg gtagtttatt      9120
     aataacagaa tttacaattc ctgaaccaac aactgcagtt tgatttcgta tctttctttg      9180
     gaaagcttta ttacgactga taagttttga tcttttcttg atcatttata ctttttactg      9240
     tctaagaatg tggaatattc tacaaaccca aaacaatgtt gtatgattgc agaagattta      9300
     actactaagt taaatagtta aagaaggagt atttatactt ttttctctcg ttttctctct      9360
     ttcattgatg ataattttca attcaagaaa tggtttaaga atcatttcta catcgcgaat      9420
     tcgtttctga aaccacatcc tatctcttac ccaatagcct ttcctatctt cattaacatc      9480
     attcaaaaca taaagagtaa catcttcatt gaatcttact tgttttaaat ttttcatttt      9540
     gagttttgag taacaaaatc gggttagatt gggttataag tcttttttca actaattatt      9600
     taagttagga tagtgtagta tacctaaata aacactacaa aacaccttct aagagcacac      9660
     catttttagt aagattttgt ttgctatata tatatatata agtctttcgc gcatccaact      9720
     ctactgcgcg aagacgcatt tatttaaatg cgataagcga acaaaagccc gccgttgaag      9780
     tttcttatcg aaaggaatgg aaggaaagag cgtggggttt caataaaaca tacaatcatt      9840
     cgagcgtggg cgtacgccac ctccgcgttt atttgtttgc tgatggagag taacactatg      9900
     cagcacactt tactttactt gactgcaact ttttttaaat ttataagtac ttgatacatt      9960
     tctaaatctt cttttaatct ttttagattt aataaatata acttgaaccg atcactatac     10020
     atttttttta agttgttata gttcctatcc tttatcacgt tggaagtctt cttttttact     10080
     gacttcataa ttgttgttgt tgttgtgttg actttttggg gttgctgact tttcacttta     10140
     agtctaatat ctctcctatt tctttcactt tgaattatca ctttttgatt atcactcatt     10200
     ttcacttaaa tttgcacaac agtgagatga gtgaataatc tatgcataca acaagttcgc     10260
     agttttatag gtacatcatt atgagatcta aggggactga ggcgtcagga tttcacttaa     10320
     tgagtcacaa tctaaaaata gcaatgactt atcgattcaa taataactat gacatcataa     10380
     tctaaactta ggcatgacgt catgttccaa aaatagcaat gaccgcaggg attcccataa     10440
     ttttcaatgt gggatttccc aggagattct tatcctgacg tcatgatcca aaaatagcca     10500
     tgacatcatg atctaaaaat agc                                             10523
//
ID   Polinton-5B_LMi repbase;    DNA;    INV; 10157 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 19.11, Created)
DT   13-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton-5B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-10157
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 2918-2918 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 10157 BP; 2647 A; 1953 C; 2384 G; 3158 T; 15 other;
     agtagtaggg caacaggggt ttagtccact gagaatcgcc cgtcttttgt ttgtcatcga        60
     cgccaggtac cgttaccacg ctcggccaat tgcccgaccg cagatcaaag gatgccgcca       120
     cactcgaaca atagcgcact taaggatgat tgacaggtta catgtaattg cacttaaaac       180
     tgacgcactt gcaggacacg taaacaccta cctgtatgcc gccccagacg ccgacgccgc       240
     cagactgacg ccacccccac ccctccaccc tcggccactt gcctgaccgc taatcaaagg       300
     acgccgccac ccgcccttcc ggaaggacag aacaaacaat atcgcactta gcgatgattg       360
     tcataaccgc ctacgacgac cgcaccactt gtgcgaggtc tgcccccacc cctccacccc       420
     cagcagacgc ccaattgccc gacctccgca cccaattaat ttaattaaat ttgcatatca       480
     atttaattgt aacaacctat gtttttatca gtaacaaggg caactgcctc cacaagtaag       540
     cacttgcgtg agcacagccc ccgccccccc cgctaccgcc cccaccccac cccaccgaca       600
     gccctaaaga ttgccgcccc ccgcgcgacc cggtccggga ctcgaacccg cgcccctaga       660
     attttatttt acaaaagtta ttacttatag acgtacacca acattgaaaa aagagcaatt       720
     attgcatact tcggcagtac aattacctgg aataatawca tcgaacatgt ccgcctccac       780
     aagtggacac ttgtggagtg ccgcccccca cccccgcccc ccaggccatc caccaccgct       840
     ccctattatt ttatgcatta acaattacaa cattacatat gaaatttgca tatcaattta       900
     accgccagcc gccaccgccg ccgccgacag gtacgcctcc gattattatt ttgcataata       960
     gtcgtactta gtacgwattt attaaggaag aatatttctc tcggaagtaa tgtttaacaa      1020
     caaatgttta taaacaatta ccaacgatgc cagggacctc gcgacatttc gtaacttaca      1080
     tagaaacgat ttatttaaac aactctaaac gagtgcaaaa ccctccgccc tcgcgctagt      1140
     gtggctaaaa ctagaccgcc cagtcctcta gggtcgagcg cacgagcgct tgcagcctgg      1200
     caggtgaaag cgtccaccta cagccagaaa tagcaaggaa tgcgtttaaa gcccatccgt      1260
     ctgttagcct aggcaaaata actgtataga cgatgctcac aacagccgac gaacgtaatg      1320
     taacggtaac gaccgcccca aacctgagtg tcaaacactg taggcgtgta acacagctac      1380
     cttaacaatt tctctcggaa acggtatgaa cgatcatcgt ttaaacgcct aacagtaacg      1440
     tagctcgatc tccagtgcga tcgcagtgtt ctccaggcaa gctacataaa acaaacatat      1500
     gctaaatgtt taaacaaaat atcataacgt tttaagcatt ctctctcaaa aaacatctga      1560
     gctacatatc caaatgatca aaaccttcta cgcaagacct ctgcacagac acaccacttt      1620
     gacgaggata gcgcgcattg catttattta atggagctgg acccagcctg acaacagcag      1680
     tcagcgtcag cctcccgtcc cgaaagcaaa catgctttca catacaagcc ccatctaacg      1740
     acaaccctct ttctctctct cgtataaatc ataccagtcg ctcttaaaat tatcaagttc      1800
     cgaaatttaa tactccctct cgtaccctgt tacaatacac atatttcttt tcgaaacata      1860
     ccaacagttc cttagatcga tgtatcgctg tcccccatcc agtacttcga cagataagkt      1920
     ttcggtcttc ctgtaatcca ccacttttat ggttttatac accttccgac aataccgaga      1980
     attcgggtag tttaattcta cctcctgcgt atacccatct aaggaatctc tctgtcctgt      2040
     tacaatgcaa acgattcttt acaacaggtc aaataccgat aatcgagcag cccagaagac      2100
     gtttaaaccc tattgtacaa cggagagtca caataacaaa aaatgcgtga aataatctac      2160
     cgatttccga ccgtctacac taaaactttt ttttctcgaa agcattgacc taacaactcc      2220
     ttattcgaca atacagcaac cacggaaccg aggtagtact ttacctgccc aatgcaacac      2280
     agattttcag ttctgtagaa caagatcgac cagcccttta cccacaaaaa ttcctactcc      2340
     aagttccttt cttgtgactt cttttttcat tccactaaac cgaacttgga tttttttttt      2400
     aaagtagctt tctccgcaaa cgaagatgct aacctacaca ccgagataca tttatagttc      2460
     atatgtcgaa gataggcctc gcccatatgt gggttatttg atcccccacc tggaaatacc      2520
     actcaaaagt atcatttggg gatcaccccg ggtcttgctg gcacaagaaa cgctggttgt      2580
     ggtgtgaatt ttgtgatcag tggcttgatt taccctaaaa ctcagtcacg tgatcaatct      2640
     atctctatac cacacgtctc gaagaataca tctggaakcg aaggatgcgt tgcacctctc      2700
     acccatatgt gggttatttg gtctttcgcc tagaaatatc actcaaaagc ataatttgga      2760
     gaactagtcg gagtcatact aagacatgaw ccgttgtttk tgatgtgwat ttttgtgctc      2820
     agtagcttat taccctgaaa ccggaacaga ggtcgatctg tgtattttaa gtttttctgc      2880
     ctctgcacaa attacatgtt tttggttgcg aatataagca atctaggaat attcttctgt      2940
     tgacagaccc tttacccttc ggtggtgtgt gtagttgact cttgcgagtt gtctgttggt      3000
     gtcgtaagat accttatact gcttctgcag tgttatcgat gtgcgctgat gcgtctgtag      3060
     tcgaagatat gattacctaa aatacgatgc gtattgtatt ctacaaggtt aaactaaatt      3120
     ggtctggatg gttaataata ctgtagactg ttgttactat ggatatattc tgtaaggtgg      3180
     gtgtggtgta tacgatatat gtaataagag ttgagtaacg aagcgagtgt tctgtctctc      3240
     cattgtgtgt ttttatcggg ttctcagagg tacgctgtgt ggtcgttaac gtctgcatcg      3300
     ccttctatct ggaaaacacg gtcgatgatt gttcgattct gcggttagta tagtcctgac      3360
     cctaactaga ggcgtttata ttctatttta tcagctctgt ttctcctcta taccckgatc      3420
     taacattcaa taggatcgas tggtaagata caaaaaagct mttgcatgtt gtacttatct      3480
     gcgtggggtc caaatgtctg atctatcgac gcgatttcct cttaaacata aagacgtggt      3540
     tagttgtagg agacgtacaa cctcgcgatg tatttggatt taaatagttc cccagctaca      3600
     atattacggg tctatttacc ttaaaaaggg atagaagtgg gtctgttgtg tttttttttc      3660
     gtagctctgt gcaattttcg cgatgtagga tgggacaaat aaatagccta gatggagcgc      3720
     tggtctaaaa ctttaccttc catgcgtata aattatacat aaaaacgtta cttgttgttt      3780
     ggaggaggac ataagacgaa tgaccctggt tctgttgtgt aagaagaccg gtgtaataca      3840
     tggttcttca tatagaatga tcatgcaaaa agcacatttc gagagcattt gtgtgtctta      3900
     ctaggtgagc ctcgttttgt cctaaaacgg atgtaggtgt gctgtgttgt aagcctatgg      3960
     ttttgatgtt aaaatcatcg atctgtgggt cgctttgccc tataaagggt tagagttgga      4020
     tctaatgtgt tgtaatctgg tgtagcaccg tgggaccgag ttagacgcat tctaagtttc      4080
     ttccctctgt ggaaagagcc ttttactctt ctgcggtgta tatagagcac ccttacgagg      4140
     tgtttgctgt aggtcctaag atctgtaggg ggggatcaag tgtgttgaga gcagtacaac      4200
     gtcgaaggag tcgtacaacc tcgcgatgtg tttggattta aataggtctc cagctacagt      4260
     attacgggtt accttaaaaa agggatggag tggtctgatg ttttttctgt agccccgtgc      4320
     atttttcgcg aggcatgatg tggcatatga acaacctaga tggagcgctg gtctaaactt      4380
     taccttccgt gcatataaat tacatataca aacgttactt gttgtttgct gtagaacata      4440
     agacgaatgg cattgggtct gttttgtacg aatattggtg gagcacgtgg ttcttcgtat      4500
     agaatgatca tgcaaaaagc acatttcgag taatatttgt gcgtcttact aggtgtggtt      4560
     cgttttgtcc taaaaagggt tagatgttaa tgttttgtgt tgtaagcctg tggtttgatg      4620
     tgaaaatcat cgatctgtgg gtcgttttgt cctaaaaaaa aagggttaga gttggatcta      4680
     aggtgttgta agctgttgta gcacagtatc taggtttctt ccctctgtgg aaagagcctt      4740
     ttactcttct tggtcctaag atctgtaggg gagggattaa gtgtggagag gatcgctcca      4800
     acgtcgttgt gattacctaa aatatgtagt agtttgcatc tgcaacagct atttgttgtt      4860
     aagacttata gcttttcgtg tagaacgttt cggttttaca ggwctatgga tmtaggagaa      4920
     aataccggaa gataggttat gtgtcagaag agcagtgctt cgattgatcg agtatctgtt      4980
     agttggtcag ttatcggaga tgtacttctg tgctgttcta gtctacagct aagcawgcgt      5040
     tcgtttaaat cgatgttgtg cgatacgttg gtgtatggac tagagtttga cttagagact      5100
     gtctttattg tgtgtcgatg ttgcttaaga gcgaagtatg ctgtgacaaa tcgttgtttt      5160
     ttttaattct tatggctgtt gatagaagta atgtaatatt cttcttcgta aaataggtct      5220
     cgtgtattcg taatctggtg cggacgatgt atcttggctt gtgcgaaata ccgatttcga      5280
     tctgtttagt cgtacagttc gctgcaacga ggtgttctac atttgtggac tgcatattga      5340
     tacttagtag tatggttatg tttagggctt ggggtgttta cgaatggacg tctctcggtg      5400
     gcgtagcgga gatgcttgcg gcggtaaatt attgttcttc gatctagaag catcgatttc      5460
     ttgattggtt agatcaaaca aggtgcggtg tattcatctc gtctttagtg ttgtttacgt      5520
     gcgaatggat gcctcctgta gcgtgtggcg atgtttgtgc ttcggtcgag aagcatagtt      5580
     cgacaatctc aatagtttgg tgtcttggat gatcttctag cgttgcggtg gtaaattatt      5640
     gttcttcggt cgagaagcat cgaattcaat aaaccctatg gttaggtgat ttaaagctgg      5700
     gtagttacct tctttgggag gcgtgtttaa tcgtttgttt agtctctaaa ggactgctct      5760
     tggcgttcga taaaattttg ggtgttgtat tagttcgaaa tggtctagac tatttttttc      5820
     gttgttagtt gtaaggatta gatatataaa tataagaaaa gagcttgttg ttgatctgga      5880
     tcgttccttg ttagctgttc tatgtgtgtc agtcattttt acgatgtaat tgggtgtgtt      5940
     acagatgttt atcgggagta ttgatttgtt agaaggtgga atacgatgac tgtttgtgct      6000
     cgagtgattg tcaaacgtac gaggtatgtg gtctagtgac tgatagaaaa cttttcagaa      6060
     atactgtctg gtggagtatg caatgcaaaa agatgcatga tcaatcggtt agatgttcgg      6120
     gagggatcca ccaacgacgc agagttaccg agattgtcgt ttgctagtta gtttagaact      6180
     ttagtagaaa agagctggga tggttagatc cttttgctgt agttcagtcg ttgggttgga      6240
     gatggttgtt gttacataga gtgtcgtagg ctagttgggg tagaatttaa gtaaaaagtg      6300
     tttgaaatat gcgctacagt gtctgtttcc agttgtggat gatgttgtgt tgcgatagag      6360
     ctctaaagaa gtcgctttag gattatgttc ttaaaacttt gcgctgtgta cgttacgaag      6420
     tattgcctgt ttgatcgtgt gttagtggtg tttaatttac gagtggtgtg cgatggtaaa      6480
     ttatttctga tcttttaact tatacatgcg tagtaaattc gacaagttcg tcatggagac      6540
     aaggcgaagt taccatctcc cctacctggc ggcggcgttg tgagagcact cggaatactg      6600
     gagaaactcg gcaaggagac actggagaac atctcgagga aatcatttgg ctgtacctta      6660
     taaagtgggg cgagccgatg ttaaactaga tctccatctt cgtgttggtt tgggcatccc      6720
     acacgatttc gcagtgattt ttttatttaa caaactgggt atgtgtaagt acttagtatc      6780
     cacccattac tttcgcttgg aaggaggctg tatagggcag ctggaatcga ttgacgtcga      6840
     atacatttat ttgtcgaatc acgagttctg gtgtcgataa aattaccggt agtcacctta      6900
     tctattttat aacaggcgtt tgcgggatac ttttatctct tcgtttggca ttaccagact      6960
     ggaggttgca atatacactt aaggactaga tcgggaacgg ggacagccaa tatttacaaa      7020
     gtgcagccct gtactgtgtg tcactcccat ccattcctta gagagcagtt cttgtgctgt      7080
     gttttgctgg gttaataaga acaccgaaaa ttgactggtg tgtccgtaaa tctagcgaac      7140
     tctgggacgt ttgcggtctt aaggggtagt tgattgcgat tgcatggtaa tgcgtagaaa      7200
     tattatgatc gatgtcgcgt tttcctgcgt tgtgtgctgt cgtttgagcc ctaaggcgca      7260
     ctactttcgt ctttaaacgt ttttgtttgt gtaatactat tccgagagag aggatgatag      7320
     tgcagacgac ctcgttgatg aatgttttgg cctctagagg gtctactaaa tttcgctgtg      7380
     tctactatta ttattaggat gggtcatcta tcatcgcctg tactttgaca tagggcttcg      7440
     aaatatgcga ggtttgttgg ctataaattt tctggtgttg cggtgtgtag gcagcattta      7500
     ggcatcttcg tttgcggtag acagctactt gtaattatcg atttaaaaaa ataaatccga      7560
     gttaggttta gtggatgaaa aaagaatcac aggaaaggag cttgatttgt gtttggagta      7620
     agaatttttg tctatatttt gggtaaaggg ctatcgatct tgctctacag aactgaaaat      7680
     ctgttgtagt gtgttgcatc gggtaggtaa agtattacct tatgtcctct cggtttgtgg      7740
     ttgctgtatt ggcgagcgtc attcgaagaa ggatgttgtt gtcaggcttt cgaaaaaaaa      7800
     gttttagtgt ggacggtcgg aaatcggtaa actgctgatc ttaaattatt tcatgatttt      7860
     ttattgttta ttgtaactct ccaaggaaat accgttgtat aacagggttt agttttgttt      7920
     aaacgtagaa agaacaattt taaatgtctt ctggagtgct cgaatgtcgg tatttgacct      7980
     gtgtcagtaa atgttgtaaa gaatcgtttg cagtgtttaa tattgtaaca gggtatggtc      8040
     gacagagaga ttccctttgc tatgtttagt ttcagaagat gggtatatgc aagaagatgt      8100
     gtactgctgt agcatttgct ttataaggga aataagaggt gaaattaaac tacccgaatt      8160
     ctcggaaggc gcagaactgg atattaagtg gattacagga agacgtggag ttcgaaaact      8220
     tacctgtcga aatactggat gggagacagc gatacatcga tctaaggaaa cgttgtaaag      8280
     acttggtaca tttcgaaaag aattgtctaa tattgtaaca gggcatggtc gctaaagaga      8340
     gagagtatta aatttcggaa cttgataatt ttaagagcgg ccacaaagtg cgactggtat      8400
     gatttgtacg tgagagcagg ttgtcgttag cctgtctttc tgtctgagtc cagccaggaa      8460
     gtctgataac atcgcttgca gatctaaatt tagacgcatt ccttccaggt ataacggcgg      8520
     ttgagtgacc gagtggcttt cgccatgttc ggtaaaatgc cgtgtgtgta agctgcagtg      8580
     ttcgaaatct atagtttcta tgcagacttg tgcttgaatc ataagatgtc cttgccgatt      8640
     ttcgctattt ccgtcagtaa attcgttttt tttataaaca atatgtcttc tgctgctgtt      8700
     gttgttgttg tgttaccgaa agagtgtttg acatacaagt ttgtggcgtt cgttaccgtt      8760
     acatcccgtt tattatctaa cgcgcgctat tattaaacac gtccgtcggc tgttgtatac      8820
     gtagtctaaa cgaagagctg gagagaatgt aaaataaaga acgttatgat attttgttta      8880
     aacatttagc atatgtttat agaatgtttt atgtagcttg ccggagaaca tggtgtttgt      8940
     gatcgcattg gagatcgagc tgtgttctgt ggcgttttac ttttaaaagg gtctcgtgtg      9000
     tctacgagag aaattgttta aggtagtgtg ttatgtgtgt tacacacatt gtggcgtcgt      9060
     tactaacgtg cgctattttt tttttcgtcg actgttgcaa gcatcgtcta tgcgaagaga      9120
     tacatttatt ttgcccaggc accttagggg gcgaacgatt tccgaaagac ggaacagttt      9180
     tttggatagt cctaaatgtt tggttagaat tgtttttaaa taattgtcga taaatgtaca      9240
     acacccaccc gtagcattac accgaatttc tttatgctgt gtctatattt acctgaaaaa      9300
     ttgcgagttg tacttaaggt ttgatgtatt acgttactta aactgtatgt accaacgtaa      9360
     tgttctaatt ggcaaaaaca taggatgtcg caattaatat gcaaattagg tataaaaact      9420
     gggagcggtg gtggaggcct ggcagtgggc ggggggagtg attgtttacg aaactcttgc      9480
     aggtacatgt ttgatgttat tccaggtaat tgtattgtct gaagtacggt tataaataaa      9540
     ataattggct ccttttttcc aatgttggtg taggacagag taatacaacm tgtacgtcga      9600
     taagtaataa cttttgtaag aaaaaattat tttaggggcg cgggttcgag tcccggaccg      9660
     ggtcgcgcgg gggcggcaat ctttaggact gtcggggggg tgcggcgggg atgagggcgg      9720
     gggcgggcgg aggcggttgc cctataagtt gctcaattaa attgatatgc aaatttaata      9780
     cggaatgttc taattgttaa tgcatataca taggatgtcg caattaattt gatatgcaaa      9840
     ttaggaataa aaaataatag ggagcggtgg tggatggcct gggggcaggc gggggcggta      9900
     gtggcccaag tgtccacttg tggaggcggt cacgttgttt acgagaacgt tacttgttat      9960
     ttgtcattcg tccttaagag cgtcattgtc ttactaagtg caattacatg ttcgatgcaa     10020
     gtgcactatt gttcgagtgc ggaagggggt ccatcggcgg tcgggcaagt ggcckagggt     10080
     ggaggggtgg gggtaacgta cccgccaagc atcatgggta gattctcagt ggggtggtac     10140
     cccattgcta tactact                                                    10157
//
ID   Polinton-5C_LMi repbase;    DNA;    INV; 3678 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.11, Created)
DT   17-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton-5C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3678
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3024-3024 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. 3'-end is not covered.
XX
SQ   Sequence 3678 BP; 1061 A; 994 C; 648 G; 973 T; 2 other;
     agtagtgtgg taaagccggt tgaagcacag ggtacccaca atgcattgcg cgagtaccga        60
     tacccccacc ccaccacgct cggccaattg cccgaccgca gatcagagga tgccgccacc       120
     cgtccttccc ggaaggacga aagatgattg acagtttaca tgtaattgca tttaggtcct       180
     tttgattgtc atcgacgcta cttgtccgac cgctaatcaa agggcaccgc ctcgcacttc       240
     cgggaacaaa caaaagatga ttgacagccg ccccctcgac atgtctgtac ttgcgctacc       300
     cccaccctca gccacacacc tggccgacac gccgccccct ccacccccgc cagccgccgc       360
     cgccgccccg ccgccagacg ccaccccctc cacactcgcg accgcttctc aaaggacgcc       420
     gccacccgcc ctacccgcga ggacagaaca aacaataccg cacttagcga tgaccgcatc       480
     gacatctcta aacaacaccg cccccgccag ccgaccccta cacccaggac aggggcgtac       540
     tgcactctta acggcgatcg cgccccgcca ggtcagcagc caattaaatt gcatatttat       600
     taagcgcgcc acgagacacc gcagcgatcc ctacgccaga tctcgatttg tttttattcg       660
     catataaaat ttttaattct gacaacctat gtaacaattt ccgccgttta ttattctcgg       720
     aaaataaagc taccatattg ttcttcgtat gtatttttaa caagaatttc ggtgtaatgc       780
     taaaaaacaa ttttaaacat ttagaacaga aatgtttagt tggtctctgg acaaaaaata       840
     accgtatact acagcttgta gtaaaatatt aaaactcgta tgcaaaattt gcaagtaaga       900
     atttatcgat gcgcaaacac tcccatctct ctccatgctc ttcgcataga ctacaaatac       960
     aacagccgac agacgtgttt aataatagcg caggttagat aataaacggt aacgaacgcc      1020
     acaaacttac gtatccatct taacatatac tctttcgata tccaaaaaca attctagcca      1080
     gagtcaaaca tttgggacta accaaaagaa aagaaatggt ccgtttcgga acttgaccgc      1140
     caccttagat ctataagcaa aataaatgta tctcttcgtt tatggctgca acagctgacg      1200
     attgtgttaa atatagcgcg cgttagaatg taatggtaac gaacgctaca aacatatatg      1260
     tccagtgcac tttgtgcccg ctcttaaaat tatcacgttc cgaaatgtaa tactctctct      1320
     ctttagcgac cattttaagg taaatagaca cacagatcaa cgaagtacac gtcacaactt      1380
     tcgatgtata ggcgccttct atctcctaac ccccaaccag taaatcgaca ggtacaggta      1440
     cagttctaac tccaaggcgc gtagtcatct ctccaccaca cacctgagca cgtgatcccc      1500
     caacccctcc tcctccacta cgaaactgac ggggatccga tcctcggaga tacacacgtg      1560
     accacattta tttattatta cgcactgcat ctaggttaca agttctctga tcagcacact      1620
     gcagttacgg taaacgcgtt tggaaatatt acattttttc ttctgcagga agggacagat      1680
     gagcgcagaa tctctccctg gcgaagacgc gcccgattgc cgcagccgac cataacaggt      1740
     gttacatggc cggaatccat tgtgaaagaa tcctttcgcc tactgcatac acagatttct      1800
     gacagcactc ctccattaga gctcaaatca cccacacttt gcgacaacgt ctggatttcg      1860
     gacactgcta tcttaccgaa aatgagaaat tttttttctc tgcatttgac ccgtccattc      1920
     ttaaacctag atatttcctt agatcgatgt atcggtatct cccaaccagt tctacgcctt      1980
     ccgacaatat tcttctaagc actctggtat tttaacttta cccattattt cctggttata      2040
     acactctgcg tgtacgccac cgactcttat gatacccgca attccgtatg gaacactagg      2100
     ttatgcataa aacgaccgct tgttaactgt ggttattcca tcggttttta actctgcaaa      2160
     tggctgctcc aacacccagt cctcaacatt tggatacaat gtagcccttc tccaaacgag      2220
     aatgcaacac gtttgtcgtg tgttccgcta atttcggtca atacaacgac gcgagaccaa      2280
     tcccccgggc tgtttagtgt aaaagcaaat attttttaag acgtaatcgt agctagattt      2340
     ctccacacta tctgtttaaa ccgggcttgc acatatgcaa tagcctcctt taaagccttt      2400
     gtcttcgcca tataacccag ttttcgttta cccttcttct taggacttgt ggaataacgt      2460
     aggcgatatc tacgtctgtg gagaataaag tcctggaatg ctaaaatatg ctttaatata      2520
     gctccttgct cgactctcca agtaatttac aggtagacag ttgaaactaa aacataatgt      2580
     ataagctttt ctcggtccca gagagcggtc aattttcggg tactctttaa tacccaagta      2640
     atcaaattgc agaataactg atctctaaaa gcgtatgtta gccgggacca tatggatggg      2700
     agcgatgcac agtacaacgg cgcactttgt aaataccgta tcttctcttt tagaacactt      2760
     aaacaatctt cttgcacaga tccataacca caatcctcca tcctggtaat gccatcttct      2820
     cgacccagcg aaaaaataaa agtcctcaca atcgcctgtc tggacgcttt ataaaatcga      2880
     tattgtagct accgataact ttgcttacac cagggctcgt gatttgacaa atttattatt      2940
     tattttgatt ctacaattcg acgccaacca cgttaagcag tcgtttccaa ttgtcttgtc      3000
     gtcgcccgca accacgttgc tgttgctcct tccatccgaa agtcatgctc ggatacgaac      3060
     gccactcggt taaaaacaaa tcccttcgaa atcttgtgtg ttgtccaaat ccaggagatg      3120
     gaagccatct acacgaagct gctgtagtat agatgggagc tcctccatta aaacatcgat      3180
     tagttgcact ttataagata tatacccaca ggacgtacat atttcccccc tgtattccac      3240
     aaagtagcca caaatagtaa cttcgtctta tctccagcgt ttgcagtatc gaacttgctg      3300
     aatttactac gcaggtagat ccgcacatct ataacaatac ctcaccacac acgcactcca      3360
     ctggctacaa ctagcgcact ttaagttacc aaactatagg agttttataa aacacgttga      3420
     ttttcgacga aagaattatg atttaccaca gcaggcatat ccgctacgta acataatgga      3480
     caccagccgt aaagtagaca acactagcat acgattaaac aggcgatgct tcgacgaaag      3540
     atcagataac gtacacactg caaagttttt ttacaaccac maaagtcggc ttctttagag      3600
     ctctactgcg acgtgtattt agagtatatc aacacttttt acttaaattc catcccatct      3660
     agcctacagc actctmtg                                                    3678
//
ID   Polinton-5_CoFl repbase;    DNA;    INV; 18140 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 24.11, Created)
DT   25-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-5_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-18140
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2109-2109 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5-bp TIRs? The exon-intron structure
CC   is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           1005..2159
FT                 /product="Polinton-5_CoFl_1p"
FT                 /translation="MLKIPCLVPVAKRKVFVSDTSVRYAPGKPRVLSVDEK
FT                 PKILLPLKYKDYEIDDEFFLRKKIIVSDNSAKSDSNTNNIKTEENVNDDDD
FT                 DSVDNDENVNDDDGDSVDNDKNVNDDDDYDSVDKDENLKRENDREPSISVS
FT                 GLPKISLPLKYRYFRLDHELPFKKRIVIDSSVSGSNGDNDINKIKNKINEN
FT                 NYDNHDSDNNDVSESDSIISVGGLSVISLPLKYRYLGFNHELPLKKRNVVN
FT                 DSVDDSDGGADCESLVSVGDLSDWYSGPVDTTIDVSDNEDYHNSGSDSESV
FT                 LKQKSVADSDSDETFNGFSFSKDEESAQLFSLQTIMKPMMIGLVKRKKISR
FT                 KDKCSLCQLKYYNQNRKKGRKWCYYNGLNGWLCSLCIQIFE*"
FT   CDS           12164..13036
FT                 /product="Polinton-5_CoFl_6p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MIIHNRKGCGVINTLINKLPVELHIPGYQYCGPGTKL
FT                 AKRLARRDPGINPLDKACKQHDIAYSQNRENIAARNTADKILAEQAWQRFK
FT                 AKDASLGEKAAAFTITNAMKLKSKLGMGSFRNTSSSKVSKNKMKKKKKITL
FT                 KSLIRSASKSMVPSSCARKVISSALKRAREAVKKVGGKKNIVMPRVLPIPR
FT                 KTGGFLPYLIPAFAGLSALGAITNGVTGVIKAINDAKVARKQLDESERHNK
FT                 EMEALLLGKGLFLKPYKNGLGLHLKPGKGLKDKKKNFLCKTALPSSHRL*"
FT   CDS           16463..17125
FT                 /product="Polinton-5_CoFl_9p"
FT                 /translation="MEFYEDYVIEIRGFLDASRQFLPKEVAVVSLMRPAIS
FT                 HWIVRPPCNFSTLPMDVRQNNDFQSKRVHGLRWFEGDCSIRKLQQHLYTVA
FT                 KNAHRIYVYEDNTATYLESTIGCTVINIQQYMVPSRHILNMGYSTKALMCG
FT                 THDVQKSLRRKQYCALSKAHQIKLWLCSLVESSIEPDSECFLDALNSYKKK
FT                 FSKTLPSWDTVDGINANDTDTDSDSGTDTNV"
FT   CDS           9833..8871
FT                 /product="Polinton-5_CoFl_4p"
FT                 /note="integrase."
FT                 /translation="MEEVVKELHKPARRNYLRREFDVRGLDETWQADLVEM
FT                 IPYARENKGYKYMLTVIDVFSKFAWAVPVKNKSGQDVTAAMKSILTEGRVP
FT                 TNLQTDRGKEFYNANFQSLMQKYKINLYSTYSNLKASICERFNRTLKHAMW
FT                 RKFSLQGSYKWIDILPKLLADYNDRKHRTIAMKPKDVSAANSNNVIKIFIS
FT                 KKTLERKKPKFKLGDKVRVSNIKQMFEKGYTPNWSTEIFTIARVAPTSPPT
FT                 YHLKDYQEQPISGGFYEQELQKTKYPDTYLVEKIISRRKNCVLVKWLGFDN
FT                 IHNSWIDKKDLSRVFPKLDVNIKKFAEN*"
FT   CDS           join(11911..11260,11173..10209)
FT                 /product="Polinton-5_CoFl_5p"
FT                 /note="Poxvirus A32 protein."
FT                 /translation="MSFVEQNIKLPVVNFDEIVKQDKKIKRHGDLLPDTIR
FT                 AVLCGPSNCGKTNSLLALITHPNGLRFENVYLYSKSLNQPKYKFLKQLLEP
FT                 INGVKYFSFSDHESVISPDKALPNSIMIFDDIACEKQDNVKAFFCMGRHKS
FT                 IDCFYLCQSYAQVPKHLVRDNLNLLVIFRQDDMNLKHIYNDHVNTDMMYNE
FT                 FKKLCVNCWGVGKHGFIVIDKERDVDDADNMDDFRKEKHILRQVEKAREAV
FT                 RRKHRLLKSGRENFEKQIGETFKPITDPLNKIIYDKKKEKNLSPSFESPPG
FT                 EPFKPFKPKIKNIDTSTFQSANSNSNDEDDTSSLDDTIKNYDTVVEKSDDD
FT                 SAHDIDENLSMNPYLQILDRNEPELDRIYGIRKERDGRYILGDSPIYFKKS
FT                 QIHIKDLRYPMTDGLMELLIKKHPDKKHMTPDNLAQYKQILETSSAHKRKF
FT                 DKNETIRPYNSNKFNNVIAPLFNLTQVKKKGGSIPSFKIAKLNTQMDYVYW
FT                 DDPNELVNRLRLLVAEKSAGNLSHINEINSIVEELREANIIY*"
FT   CDS           join(13424..13574,13784..14112)
FT                 /product="Polinton-5_CoFl_7p"
FT                 /translation="MGESLTLSLSGTSSILEAQYFPPIELSSAHNYVLGLV
FT                 ELLTFNSIPNIDEGFTERVLRDTTTHNSDLPVAILKVNTLRVECNITTGAY
FT                 INGEKVHTIHEFFPAVPPGYKIVEVPSQIIYLPVAVKIIDHLQVRIIDQDG
FT                 NLINFRGEVINIRLHLKQLN*"
FT   CDS           join(3593..2998,2837..2778)
FT                 /product="Polinton-5_CoFl_2p"
FT                 /translation="MAAINDMLPHVNSLNLHMLPKKVLLKYFGAQIDTIYE
FT                 ALSENLKNDSDIKEHLRCYDHYNTERDQIDGPAPMKRDCLMCNLKTTADTS
FT                 DKRKFIVDVQGYQINKNNFIFKEVAILNMKTDAKPLVFLFKPPYPWIFLSK
FT                 TNMYQVSWLETNFHGILWRSGKISYDKVQHTIQSVINMSDEVYVKGLEKTK
FT                 WLARILPEWPSAPYVILMHLKNGYKIQNX"
FT   CDS           join(14403..15606,15661..16169)
FT                 /product="Polinton-5_CoFl_8p"
FT                 /translation="MEEILSIQSGVVFDESVAHYEIHAHRPHIASAFHNSD
FT                 EIRILIQHQDLCLLPSQSSLRIAGRITNEEDGALLRTTLVNNAICHMFEEI
FT                 RYELNGIEIDKCKNVGLTTLMKGWISFSPSQSLMLENAGWIDIEEKKSIIN
FT                 DHSYFEVSIPLSMIFGFAEDYRKVVVNAKHEVILTRSRDDVSAVIQVANNQ
FT                 NFEKYKLTLTQIEWLVPYITASDRRKIRLLDIIAKDKPISMSFRNWELYEY
FT                 PLLPKTSRHVWTVKTSNQLEKPRFVILGFQKKRKNEPASNASLFDHCNISN
FT                 VKLFLNSHYYPYGNLNLDINKNQFSILYDMYKNFQAAYYGKEPEPMLNKTD
FT                 FITRMPLIVIDCSKQNEALKSAPVDVRLEFEARENFPENVSAYCLILHDRI
FT                 VEYNPISVFNMMEYVVDMQGFKKPGNDYVLKELAILSLHGDDEPQVFLFKP
FT                 PFPWRRLNDKYKRENLWLELAYHGLDWKSGDIDYTEIGNVLRENLKDAKKI
FT                 FVIGEVKKRWLERFNFQVNDMVDYPEFELPTLATACPHHNGAYRSMCATHN
FT                 VKRMKKFYFHMEWEDVTDSEEDV*"
FT   CDS           join(4059..4794,5050..5403,5509..5863,5946..6618,
FT                 6688..8250,8480..8776)
FT                 /product="Polinton-5_CoFl_3p"
FT                 /note="DNA polymerase B."
FT                 /translation="MFTAQYFKDEAISIHKSYQEVIKSESDIYTNKMLSYC
FT                 YTVLQNADIFCKRQDLTISDKQKFQAAVALIKTLMQRLYDRLEIIEAVKLF
FT                 ENEPDFFEHSQLVKSDYHKVTQGVGISTATPDTIATTSFKDASVDWEVINS
FT                 AFENRINTALIVNRKHLDLLTFMEDARQQFVKRIKQTLDEHQALKVNTVLA
FT                 AEYVKVKDENEIVDIKYFNTKSQAVFQTTDLYEWFMMYVQQPIEKDMEDFQ
FT                 DKESVHPKAIKKFERQNDVSINLYFLKKKRNVYDVFPCHVTSQKKDKHVNL
FT                 LLVESFYFDENEETEHQENNVHVSNKFHYVWMKNLSRLVHRTFSKKCASFI
FT                 CDRCLHHFWTAQKLLAHETDLYADFECLLQPVKRDHVFQEHKAFSIGFFIK
FT                 CSYDNRKSQYKSYRQNCEEDEAPAMWFVKSLHALAFQLQYLYDNPCKMINL
FT                 TTQEHDEFGNALLCHICNESFRSKAEKVRDHCHFTGKYRGPAHNKCNLNYK
FT                 DSRIIPIIFHNLSGYDSHLFIKELSMSFPGQVQLLPRTKEKYISFTKYVEG
FT                 TNINLRFIDSFKFMGSSLDKLSSYLDNFEMLERIFMNDDKYSIEQIGLLKR
FT                 KGVFPYDYVSSFEKLQENSLPSKNDFYSSLYEAHISDQEYEHAINVWNTFN
FT                 IKTIGQYSDLYLKTDVLLLAEVFENFRNNCLEAYELDPAHYHTSPGLTWDA
FT                 MLKYTKIQLELLTDIDMLMFIERGIRGGISQCSNRYAKANNQYMNEGYQPN
FT                 EDEKYLMYYDINNLYGWAMTQPLPYSSFKWTQNMNPVGITNVKDDAEIGYI
FT                 LEVDLEYPETLHNAHKDLPFCAEHKTPVGSKQKKLMTTLYDKNRYVIHYRA
FT                 LKQALKHGLYLKKIYRVLEFKQSTWLKEYIDLNSSKRQNAKNEFEKMLFKL
FT                 FNNAVYGKTMENERKHVDVKLVNKWEGRYGAEALIARPNFHSCDIFDNQLV
FT                 AIQLLRTEICIKKPIYVGLCVLDLSKIRVYRFHYDFMKNYVGDQSKLLYTD
FT                 TDSLLYEVTNTNMYKVMSDNLEEFDTWDYAENNPFNIKRGNNKIVGLMKDE
FT                 CNGNIILEFVGLRSKMYSIKIQNQKPLKKAKGVKNNVVQATITFDDYIKCL
FT                 CENTSMSREQKSIRSRHHQLYSEKENKIALSAYDDKRYLQYGQTDTLPWGH
FT                 YSIIPRLINEEETTYQRSEPGGEPTNQQVEFLSNKGGRAIYEELQQPTELN
FT                 LSTTPKRINIENFTDKTMNLDKLNRIASGQYLPTKKLREVENDRIFMLTKL
FT                 KKVNTQYGMKIVAELDDEFQMFLPKMIVDALLEDENYLMKLQGDANKMKLF
FT                 MCVKGSKVIFSYA*"
XX
SQ   Sequence 18140 BP; 6101 A; 3119 C; 3223 G; 5697 T; 0 other;
     agtagtatag ctagggggat acggagccac cgtggcctcg tatcccccta cggatacgga        60
     gccactgtgg cctcgtatcc ccctacggat acggagccac tctggcctcg tatcccccta       120
     cggagccggt caggcatacg tactagcacc ggatccagct cgtatccccc tacggagcca       180
     gtcaggcata cctactagcg ccggaccgtg ctcgactcga tgcgtcttgc tccacaatgc       240
     atatatggat gagctgcaaa ataaggctct atttacgtat gactctgctg gagaaaatat       300
     cgagccacaa acacagatat caagtgtaat gtaatatcat acttttgatc tcaccggtgt       360
     ggacgtgatt cactcacttg ctaatttata cacactatcg ttgacggaag ttgtccatag       420
     cacgcgtact tatgttactc gaaagagatg aaagaataaa cgtgctcgat gcgtcttgct       480
     ccacaatgca tattatatgg atgagctgag atataaggct ctatttactt atgacaccac       540
     tggagaaaat atcgagccac aatgagtcaa caagagctct aatattgaga tactcgaaca       600
     atacaatact ttcttcgtgg taaaggtaac cgatacatat aaaaaataaa cctctacatc       660
     atgtagagct cttatatcct caaaacatgt accaagaata aagtcatgag taaagtaatc       720
     tttatgatat ataaaatata atgattgaat atcttgtaca cttctcatct tcatggtata       780
     tgtaacctat acatataaaa aaataaactc ttatgcagct ctcacatatc cccaaaatct       840
     aaacatacat ggagagttaa ggcatgagga aaaataatat aaggggtatg attcctttgg       900
     agaaggcaga tgatttgcta ccttcggatg ttgcaaacct cgaaaataac gcgagtgagc       960
     catcgaaaag attttcgttc acgttttaaa ttttaaattc aaacatgctt aaaatacctt      1020
     gcttagtacc agtggcaaaa cgaaaagtat tcgtttcaga taccagtgtg cgttatgcgc      1080
     cgggcaaacc gcgagtgtta tcagtagatg agaaaccaaa aattttatta ccacttaaat      1140
     ataaggacta tgaaatagat gatgagtttt ttttaagaaa aaaaataatt gtgagtgaca      1200
     atagtgccaa aagtgatagt aatacgaata acattaaaac cgaagaaaat gtaaacgatg      1260
     atgatgatga tagtgttgat aacgatgaaa atgtaaacga tgatgatggt gatagtgttg      1320
     ataacgataa aaatgtaaac gatgatgatg attatgatag tgttgataaa gatgaaaatt      1380
     taaaaagaga aaacgatcgt gaacctagta tttcagtgag tggcttacca aaaatctctt      1440
     taccattgaa atatagatac tttagattgg atcatgaact tccctttaaa aaaaggattg      1500
     taatcgatag tagtgttagt ggtagtaatg gtgacaatga cataaataaa attaaaaata      1560
     aaataaatga aaacaattat gataatcatg acagtgataa taacgatgtg agtgaaagtg      1620
     actctattat ttcagttggc ggtttgtcag ttatctcact accattaaaa tataggtatt      1680
     taggatttaa tcatgagctt cctttaaaaa aaaggaatgt ggttaacgat agtgttgatg      1740
     atagtgatgg tggtgctgat tgtgaatctc tagtttcagt aggtgattta tcagactggt      1800
     acagtggacc agtcgatacc acaattgatg ttagtgataa cgaagattat cataatagtg      1860
     gtagtgacag tgaatcagta ttaaaacaaa aaagtgtcgc tgattctgac tctgacgaaa      1920
     catttaatgg ttttagtttt tcgaaagacg aagaaagtgc acagttattt tcattacaaa      1980
     cgataatgaa accaatgatg attggacttg taaaaagaaa aaaaatctcg cgcaaggata      2040
     aatgttcgtt gtgtcagctc aaatattata atcaaaatag aaagaaagga cgaaagtggt      2100
     gttattataa tggtttgaat gggtggttat gcagtctctg cattcaaata ttcgaataag      2160
     tggatcgcaa taatagtaat caacgtcatc atcatcatca tcattatata tggttatcaa      2220
     agtaattatt aaaatatttc aataaattct ttcagttatg ttttaaaact gttctaatta      2280
     ctctttttgt caaaattatt ctaaatatat aaaaatacat attgtatatg tttgatcgta      2340
     attttattaa taaagaaata tttaaaaagt attttgtcta aaagatattt acttttacta      2400
     attactcatg catactttgt tattatttaa aataaataaa atttaagacc attgggatcc      2460
     tcagttggta tgaatacttt attaggatag aaatgcttaa taaatatctt tattattttt      2520
     gtagtcaaaa taatttactt atatttttaa gattaaccat atgatttaaa ttttgtaaac      2580
     caaacttaaa aacaaaatat gttttattgg taagttcaat gaaaaagaga caatattttt      2640
     tctataaact aaatactttt ttattcaaac taaaaatgca ctacaattta aatagtaaac      2700
     aatttattag aatgaataac atttatccat tatccataac atttatctga aatgtcaatc      2760
     ttgacttatt tatcacctca ttttgaattt tgtatccatt ttttaagtgc ataagtatta      2820
     cgtaaggcgc actgggccag catatagttg catgctttat gattagcaca aaatattgat      2880
     ccatcataca aagtgtttag cgctgggcac ccaaaatctt cgagattatg aattaagctg      2940
     aaaaccaatt tcattagttt aatgatttgt ttgccagtct aaaacttgaa aacttaccat      3000
     tcaggcaaaa ttctagccaa ccacttagtt ttttctaatc ccttaacata tacctcatca      3060
     ctcatgttga tgactgattg tattgtatgc tgcactttat cataagatat ttttcccgat      3120
     ctccaaagta ttccatgaaa gttagtttcc aaccatgata cttggtacat gtttgtctta      3180
     gataaaaata tccatggata aggaggttta aaaagaaata ctaatggttt cgcgtcggtc      3240
     ttcatgttca atatggctac ctctttgaaa atgaagttat ttttgttaat ttggtaacct      3300
     tgaacatcga ctataaattt tcttttgtca ctagtatctg cagtcgtttt cagattacac      3360
     attaaacaat ctcttttcat tggtgcagga ccatcaattt gatctctttc tgtattataa      3420
     tgatcataac aacgtaagtg ttctttaata tcagagtcgt tttttaagtt ttcacttaga      3480
     gcttcatata tagtatctat ttgagcgcca aagtatttaa gaagaacttt ctttggcaac      3540
     atatgcagat tcaaggagtt cacatgaggt aacatgtcat tgatggcagc catcacgtta      3600
     ctgactaaaa tcattcattt gcgagtgtat ataaacaatt gcgacataga atacagtgct      3660
     ataggaacag tggagaaggg tacatttaaa aattagcact atacaccctc cccactatta      3720
     atactgttga tgttatgact aacacttttc atgtcttatg gagctggcaa gctcagctta      3780
     gagggcgcaa aagagaagag ccttcagcca atgagaattt accatatata gtataggata      3840
     gtagacataa gcagtagatg gcatatatat attttgcatg tatatagatg tactatgata      3900
     actcccattg actggactct ctcttttacg ccctctgctg agtttgccaa ctcactagtc      3960
     tgatatgcgt aaatataaaa cccgcgtcgt agcatgaacc gttcagtttc ttgaaaatta      4020
     tcaaagagaa ttagacttgt ctactaaaaa agtgaatcat gtttactgct cagtatttta      4080
     aagatgaggc aataagcata cataaatcat atcaagaagt tataaaaagt gagagtgata      4140
     tatacacaaa taaaatgtta agttattgct acacagttct tcaaaatgct gatatttttt      4200
     gcaaacgtca agatttaaca atatcagata aacagaaatt tcaagctgct gtggctctga      4260
     ttaaaactct gatgcaacga ctttacgatc gattagaaat aatagaagcg gtcaaattat      4320
     ttgagaatga acctgatttt tttgaacact ctcagctagt aaaaagtgat taccataaag      4380
     taacacaagg agtaggaatc tcaacagcga cgccagatac tatagccaca acatccttta      4440
     aagatgcatc agtggattgg gaggttatta atagtgcttt cgaaaatcga ataaatactg      4500
     ctttaatcgt gaatcgcaaa catttagatc tcctcacatt tatggaagac gctcgacaac      4560
     aatttgttaa gcgaataaaa caaactctgg acgaacatca agcgttaaaa gtgaatacag      4620
     tgctcgctgc tgagtatgtg aaagtgaaag atgaaaatga aattgttgat attaaatatt      4680
     ttaatacaaa gtcacaagct gtttttcaaa caactgattt gtatgaatgg tttatgatgt      4740
     atgtacaaca accaattgaa aaagatatgg aagattttca agacaaagaa tctggttggt      4800
     cattacgttc tatactaaat ttagtcgtaa acattaataa acttaatctt atgagaggaa      4860
     gttcttatat tgaattgcca aattatattt aaaaaaaaca ggcttgcata aatgtgatga      4920
     ataatgataa tcaatgcttt aaatgggcta ttctatcagc gttgcatcca gtgcagaatc      4980
     atgcatatcg tatctccaac tacactcagt atgaaaatga attgaatttt aatgatattg      5040
     aatttccagt acatccaaag gcaattaaaa aatttgaaag acagaatgat gtttcaataa      5100
     atttatattt tttgaaaaaa aaaagaaatg tatatgatgt tttcccttgt catgtaactt      5160
     ctcagaaaaa agataaacat gtgaatcttt tgttggttga aagcttttat tttgatgaaa      5220
     atgaagaaac agaacatcaa gaaaataatg tacatgtatc caacaaattt cactacgtat      5280
     ggatgaaaaa tctttctcgc ttggtacaca gaacattctc taaaaaatgt gcatcattca      5340
     tatgtgatcg ttgtcttcat catttttgga cagcgcaaaa attactagca catgaaactg      5400
     attgtaagag tataaataaa tgtaaaatta cacttcctaa aaacaataat tatgaaaaca      5460
     tacttaaatt taaaaacttt acttataaaa atcgtgtacc atatgtagta tacgcagact      5520
     ttgaatgttt gttacaacct gttaagcgtg atcatgtttt tcaagagcac aaggcattta      5580
     gcattggatt ttttattaag tgtagttatg ataatcgtaa atcacagtac aagagttaca      5640
     gacagaattg tgaagaagat gaagcacctg ctatgtggtt tgtaaagagt ttacatgctt      5700
     tagcatttca attacagtac ttatacgata atccatgcaa aatgataaat ttgacaactc      5760
     aagaacacga tgaatttggt aatgccctgc tgtgtcatat ttgtaatgag tctttcagat      5820
     caaaagcaga gaaggttcga gatcattgtc actttactgg aaagtaaata tcaaacaatg      5880
     aaatattact ttatggtact atttgtatta tgtagacaat ttattatgta taaaatatat      5940
     ttcaggtatc gaggtcctgc acacaataag tgtaacctta attacaaaga ctcaagaata      6000
     atacctataa tctttcataa cttaagtggt tatgattcac atttgtttat aaaagaactt      6060
     tcaatgagct ttccaggcca ggtgcaactt ctcccacgaa caaaagaaaa atacatatct      6120
     ttcactaagt atgttgaagg gaccaacata aatcttcgtt ttatcgactc ctttaaattc      6180
     atgggttctt ccttagataa attatcatca tatctggata attttgaaat gttagaaaga      6240
     atattcatga acgatgataa atacagtatt gagcaaatcg gattattaaa gaggaaaggt      6300
     gtatttcctt atgactatgt ttcttcattt gaaaagctcc aagaaaacag tcttccctca      6360
     aaaaatgatt tttatagcag tttatacgaa gctcatattt ctgatcaaga gtatgaacat      6420
     gccataaatg tatggaacac atttaatatt aagacaatcg gacaatattc cgatttatat      6480
     ttgaagacag atgttttgct acttgcagaa gtgtttgaaa attttcgaaa caattgtctt      6540
     gaagcatatg aattggaccc agctcattat catacttcac ctgggttaac ctgggatgca      6600
     atgttaaaat atacaaaggt agtgattgtg cttttaaata cataaatttt ttatcgataa      6660
     atcttataaa ttaagacatt ttttcagatt caattggaat tattaacaga tattgatatg      6720
     cttatgttta ttgaacgtgg tatacgagga ggcattagtc aatgtagcaa tcgttatgcc      6780
     aaagctaata accagtatat gaatgaaggt tatcaaccta acgaagatga gaaatatctt      6840
     atgtattatg acatcaataa tttatatggg tgggctatga ctcaaccatt accttatagt      6900
     agttttaaat ggacacaaaa tatgaatccg gtgggtatca cgaacgtgaa agatgatgct      6960
     gaaattggtt acattctcga agtagatctt gagtatccag aaacgctaca caatgcacat      7020
     aaggacttac cattttgcgc tgaacataaa acacctgtag gatccaaaca gaaaaaatta      7080
     atgactactt tatacgacaa aaatcgctac gtcatacatt atcgagcact taaacaagca      7140
     ttaaagcatg gtctctactt gaaaaaaatt tatcgagtat tggaatttaa acaaagtaca      7200
     tggttaaagg agtatataga cttgaatagt tcaaaacgcc aaaatgcgaa aaacgaattc      7260
     gagaagatgt tgttcaaact gtttaacaac gcagtttatg gaaagacgat ggaaaatgag      7320
     cgaaaacatg ttgatgtaaa actcgttaat aagtgggaag gacgatatgg tgcagaagca      7380
     cttattgcta gaccgaactt tcatagttgt gatatctttg acaatcagct tgttgcaata      7440
     cagttgttac gtactgaaat ctgcattaaa aaacctatat acgttggatt atgtgtctta      7500
     gacttatcaa aaatacgtgt ttatagattt cactatgact ttatgaaaaa ttatgtaggg      7560
     gatcaatcta aactactcta tactgatact gatagtcttt tatatgaagt aactaacacc      7620
     aatatgtata aagtcatgag tgataatctt gaagaattcg atacatggga ttatgctgaa      7680
     aacaatccat ttaacattaa acgaggcaat aataaaattg ttggcctcat gaaagatgaa      7740
     tgtaatggaa atatcatatt agaattcgtg ggattgagga gcaagatgta tagtataaaa      7800
     atacaaaatc aaaagccatt aaaaaaagca aaaggtgtaa aaaacaatgt ggtacaggct      7860
     acaatcactt ttgatgatta tatcaaatgt ctatgtgaaa atacaagcat gtctcgagag      7920
     cagaaaagta tccgatcacg tcatcatcaa ctctactcag aaaaagaaaa taaaatagcc      7980
     ttgagtgcgt atgacgataa gcgttatcta cagtatggtc aaacagatac cctaccctgg      8040
     ggccactata gcatcatccc aagacttatc aatgaagaag aaaccaccta tcagagaagc      8100
     gaacctggag gggaacctac caatcaacaa gtcgaatttc tgtcaaacaa aggggggaga      8160
     gccatatatg aggagctgca acaaccgact gagcttaatc tgtcgacaac tccaaagagg      8220
     attaacattg aaaattttac agacaagaca gtgcgttcta gtaggattgc acactcatct      8280
     aactttgaag gttgtgacac catcttgaat aaaaagccta aattaactaa aggttagtaa      8340
     aaaattcaat atatcttttt tgttaaatta atgcatgcac tgataattcc ttaaatgctt      8400
     caagctgcac agttaataca ctatcaatta atttttttta ttttacacaa gcttttaaat      8460
     attttgtttt gtgttacaga tgaatcttga taaattgaat cgtattgcta gtggtcaata      8520
     tctccccact aaaaaactga gagaagtgga aaatgatcgc attttcatgc tcacaaaact      8580
     gaagaaagtc aatacgcagt atgggatgaa gattgttgcc gaattggacg atgaattcca      8640
     aatgtttctt ccaaaaatga ttgtagatgc gttactagaa gatgaaaatt atttaatgaa      8700
     attgcaagga gatgcgaata aaatgaaatt atttatgtgt gttaagggaa gtaaagttat      8760
     attttcatat gcataattat gtaataattt tagtgtaaaa taaaaaacaa gttcaatgta      8820
     aatttgtgta ttttatttat ttacttttga tacaattaac actaataatt ttaattctct      8880
     gcaaattttt ttatattaac atcaagtttt ggaaaaacac gtgataaatc ttttttatca      8940
     atccaactat tatgaatatt gtcgaaaccc aaccatttaa caagaacgca attttttcga      9000
     cgacttataa ttttttcgac aagataagta tctgggtatt tggttttctg gagttcctgt      9060
     tcatagaaac ctccagagat tggttgctct tgataatctt ttaaatggta agttggtggg      9120
     ctagtaggag ctactcgtgc tattgtgaaa atttcagtag accagtttgg tgtatatcct      9180
     ttttcaaaca tttgcttgat attgctcact cgtactttat cacccaactt aaatttaggt      9240
     tttttccttt ctaatgtttt tttagatatg aaaattttaa taacattatt tgaattagca      9300
     gctgatacat ccttaggttt catagctatc gttcggtgct tcctatcatt gtagtctgcc      9360
     aataacttag gtaaaatatc aatccactta tagctacctt gtaaactgaa ttttctccac      9420
     atagcatgct tcagtgtacg attaaatcgc tcacatatgg atgctttgag attgctataa      9480
     gtagagtaca aattaatttt gtacttttgc atgagacttt gaaaattcgc attgtaaaac      9540
     tctttaccac gatctgtttg taaattagtt ggaactctcc cctctgttaa tatcgacttc      9600
     atagctgcag tcacatcttg accactttta ttctttacag gcacagccca tgcaaacttt      9660
     gaaaatacat caatgactgt aagcatatat ttataacctt tattttctcg agcataaggt      9720
     atcatctcta caagatcagc ttgccatgtt tcatccaagc cacggacatc aaactctcga      9780
     cggagatagt tgcgtctggc aggtttatga agttctttca ctacttcttc catctctcct      9840
     aaatgtcttc tcgagttgta ttagatgttt gcgccacaat ctccttaact gtgtgtattt      9900
     cacgctgcaa atttagtact gtttctgaga atacatcact caaattgctc aatagtagac      9960
     ttattttctc ttgttcatct aaaatgaaac ttttttcctt ctgtaaagta gtgagattta     10020
     cagcatcgta aggttgaaca gctgatgcaa cattgcacaa tcttttattt tccaaatcaa     10080
     attgaccatc tgtggtgagc ttatacccca atcctcgagg acctcgacta ccacttttcg     10140
     acttagctaa tccacgtccg aatacgtcga tgttcatttt gatactgaag tcaaattgat     10200
     aaccaagctc aatatataat attagcttca cgaagctcct caacgattga atttatttca     10260
     tttatatgac taagattacc agctgacttt tctgccacta gtaatctaag tcgattgacc     10320
     agttcgttag ggtcgtccca ataaacgtag tccatttgcg tgttgagctt agcaattttg     10380
     aacgaaggta tggatccacc tttcttcttc acttgtgtga gattaaataa aggggcaata     10440
     acattattaa atttgttact gttgtatggg cgaatcgtct catttttgtc aaattttctt     10500
     ttatgcgcac tcgaagtttc caagatttgt ttgtattgag ctaaattatc tggtgtcatg     10560
     tgctttttat caggatgttt ttttatgagt aactccatta atccatcagt cattgggtat     10620
     cttagatctt ttatgtgaat ttgacttttt ttgaaatata tgggtgaatc accaagtata     10680
     tatcgtccgt ctctttcttt tcttatccca taaattcgat ccaattccgg ctcatttcta     10740
     tcaagaattt gtaagtatgg gttcatggat aaattttcat cgatatcatg cgctgaatca     10800
     tcatcacttt tttcaacaac ggtatcatag tttttgatag tatcatccaa cgaagaagta     10860
     tcatcttcat cattactatt actatttgct gactggaacg ttgatgtgtc aatattttta     10920
     atttttggct taaaaggctt gaaaggctct ccaggtggag attcaaagct tggtgaaagg     10980
     tttttttcct tctttttgtc atagatgatt ttattaagcg gatcagtaat aggcttgaaa     11040
     gtctccccta tctgtttttc aaagttttct ctgcctgact ttaataatcg atgcttacgt     11100
     ctaacagctt ctcttgcttt ttcaacttga cgaagaatgt gtttttcctt acgaaaatca     11160
     tccatgttgt ccgcttgatg gttaacaata gactaataca cacttaatga gcatgagtaa     11220
     tatttatagc aaaagcgtca aaacctcttc tgtatctacc atcatccaca tctctttcct     11280
     tgtctattac aataaaccca tgttttccaa ctccccaaca gtttacacat aattttttga     11340
     attcattata catcatgtcg gtattaacat gatcattata gatgtgcttc aaattcatat     11400
     catcttgtcg aaatatcact aagagattta aattatctct gaccaaatgc tttggaactt     11460
     gagcatatga ttgacaaaga tagaagcaat caatactttt gtgacgtccc atgcagaaaa     11520
     aggctttcac attatcttgt ttttcacagg caatgtcgtc gaatatcatt atggagttgg     11580
     gtagtgcctt atcgggagat atgactgatt catgatcact aaatgaaaaa tactttacac     11640
     catttatagg ctccaacagt tgttttagaa acttatactt tggctgattc agcgattttg     11700
     agtatagata aacattctca aatctcaatc cgttgggatg agtaattaaa gcaagtaaac     11760
     tgtttgtttt accacagttt gatggaccac aaagaacagc tcttatagta tcgggtagca     11820
     gatcaccatg gcgttttatt ttcttatctt gcttaacgat ttcgtcgaaa ttcacgacag     11880
     gaagtttaat attctgttcc acgaagctca tgtttgttgt atgctgactc aactaaaact     11940
     gaaatataat actatgaata atatgccttt atactttcaa gctcatgcgt catcgtattt     12000
     tcaaatcttg ctgatcagtt agttgaaatt aatgaaagga agtttaatat tatgttctcc     12060
     ggggctcgcg ttgactgaat actgactcag ttgaaatatg aaactataaa tagtgctcta     12120
     ctcatatttt caagctcatt catgattagg cacttgaaaa gtgatgatca ttcataatcg     12180
     caaaggctgt ggagttataa acacacttat caacaaactg cctgtagaac tgcacatacc     12240
     aggatatcag tattgcggac caggaactaa attagccaag agattagctc gtagggatcc     12300
     aggtatcaac ccattagata aagcttgtaa acaacacgat atagcctatt ctcagaatcg     12360
     agaaaacatc gcggcaagaa acactgctga caagattctc gctgaacagg cgtggcaaag     12420
     attcaaagcc aaagacgcta gtttagggga aaaagctgct gcttttacca tcaccaacgc     12480
     catgaaattg aaatccaaac ttggcatggg atcgtttcgt aatacgagtt ctagtaaagt     12540
     gagtaagaat aaaatgaaga agaagaagaa aatcactttg aaaagcttga ttcgaagtgc     12600
     ctcgaagtct atggttccaa gtagttgtgc tcggaaagtt attagttcgg cgttaaagag     12660
     agcgcgggag gctgtgaaaa aagttggtgg caagaaaaat attgtaatgc ctcgagtatt     12720
     gcctatacca cgaaaaactg gtggcttttt accatatctt attcctgcgt ttgctggctt     12780
     aagtgcttta ggtgctatta ctaatggtgt aactggagtt atcaaggcta ttaatgatgc     12840
     taaagtcgct cgaaaacagc tagatgaaag tgaaaggcat aataaagaaa tggaagctct     12900
     cttacttgga aaggggctct ttttaaaacc atataagaac ggcttaggac tacatttaaa     12960
     acctggaaaa ggcttgaaag ataaaaaaaa aaatttccta tgtaaaactg ccttaccgag     13020
     ctctcacaga ctatgatctc atcaagtatg caaaaatttt gaaaatccca cattttcgtg     13080
     gagtttttat gagaaatgct ttgccagccg atggcccacg tttttccgaa tcagcaatag     13140
     tcaatctcga tgataaagat ggtcctggta ctcactgggt tgcctataga aaacgaggca     13200
     ataacgtgac gtatttcgac agttttggtg acctgcagcc accaattgat ctaatgctat     13260
     atcttggtgt taataatgtc aaatataatt atcagaggta ccaagatttt ggtacataca     13320
     attgcggcca tctttgctta agctttcttt gtaaaaaact ctatcgtcag cctatataaa     13380
     cgtatctcaa tactcaagta acattagtca ttgaaaaacc gccatgggag aatcattgac     13440
     attaagttta tcaggaacat catctattct cgaagcgcaa tattttccac ctatcgagtt     13500
     gtcatcagca cataactacg ttcttggtct agtagaactt ctaactttca attcaattcc     13560
     aaatattgat gaaggtaata ataaatttta cgtaggcgat caagtggttg tttttccaac     13620
     cggcagctac gaaattaaga tattgagtca tttctgatcg atgtattaca acccgacgat     13680
     atagctatta gcatcaaacc aaacaataat actcttcgca gcgtaataac gtgtagtcat     13740
     actattgatt tcagaccaaa agattctata ggccgtcttt taggctttac tgaaagagtt     13800
     cttagagata ccactactca taactcggat ttacctgttg ctattctcaa ggttaataca     13860
     ttgagagttg agtgcaatat cactaccgga gcctatataa acggagaaaa agttcatacc     13920
     atccacgaat tttttccagc cgtaccacca ggatacaaga ttgtcgaagt tccatcgcaa     13980
     ataatttatt tacccgttgc tgtgaaaata atagatcatc ttcaagtgcg cattattgat     14040
     caggacggta acttgattaa ttttcgtggt gaagttataa atatacgact acacttgaaa     14100
     caacttaact aaaaatgggc atagtgtaca acaacaacaa caacaacaaa agtaaagttg     14160
     gacgaggtta tgaaaataaa ttaacgaggg taagaacaat tcgtcattca cgagccacca     14220
     aaattagacg aagctataaa actcaaccaa aatggatgag acggatcagt tgtcgacaaa     14280
     tgcccaaagc gttaacacgt caaaacgtgc agttcttaaa aaacttaggc ctgaaagtaa     14340
     gagctcctgg tggcaaataa cttgtgcttt cttttgctgt ctgcaaacaa aaaaacgccg     14400
     agatggaaga gattctcagc attcagtcag gtgtcgtatt cgatgagtcg gttgcgcact     14460
     acgagattca tgcacatcga ccccacattg catcagcatt tcataacagt gatgagattc     14520
     gaatcttgat tcaacatcaa gatttatgtc tcttaccttc tcaaagttcc ctacgtattg     14580
     ctggacgtat aacaaatgaa gaagatggtg ctttgttaag aacaacacta gttaacaacg     14640
     ccatctgcca tatgtttgaa gaaatacgat atgaactgaa tggtatagaa atcgacaagt     14700
     gtaaaaatgt tggattaaca actttaatga aaggatggat atctttctct cccagtcaga     14760
     gtttaatgct tgaaaatgct ggttggattg acattgaaga gaaaaaatct attatcaatg     14820
     atcattctta ttttgaagtg tcaatacctt tgagtatgat atttggtttt gctgaggact     14880
     atcgcaaagt tgtggttaat gcaaaacatg aagtaattct tacaagatca agagatgatg     14940
     ttagcgccgt tatacaagta gctaacaatc aaaatttcga aaagtataag cttacattga     15000
     ctcagattga gtggcttgtg ccttacataa ctgcatcaga tagacgaaaa attcgtttgc     15060
     ttgatattat tgcaaaagac aagcctattt ctatgagttt ccgcaattgg gagttgtatg     15120
     agtaccctct attaccaaaa acttctagac atgtttggac tgtcaaaacg tccaatcagt     15180
     tggaaaagcc tcgttttgtc attttgggct ttcaaaaaaa acgaaaaaat gagcctgctt     15240
     ctaatgccag tctctttgat cattgtaata tcagcaatgt gaaacttttc ttaaactcac     15300
     actattatcc ttatggaaat cttaatcttg atattaataa aaatcagttt tcaatattat     15360
     acgatatgta taagaatttt caagcagcct attacgggaa agaaccagaa cctatgttaa     15420
     ataaaacaga tttcatcaca cgcatgcctc tcattgtaat tgactgttct aagcaaaatg     15480
     aagctttgaa aagcgcgcca gtggacgtac gcttggagtt tgaagcacga gagaatttcc     15540
     cggaaaatgt atctgcttac tgtcttattc tacatgatcg tatcgtagag tacaatccta     15600
     tcagtggtga cgtaagaaaa cttgtttaat cacgtctatg aaattgaaaa atattcgcag     15660
     tcttcaacat gatggagtac gtggtagata tgcagggctt taagaaacct ggcaatgatt     15720
     acgtgcttaa agagttggcg attctttcac tccatgggga tgatgagcca caagtatttc     15780
     tcttcaagcc accatttcct tggcgcagac taaatgataa atacaaacgt gagaatttgt     15840
     ggcttgagct ggcctatcat ggattagatt ggaaatcagg tgatattgac tacacagaaa     15900
     ttggtaatgt tcttcgggag aatctcaaag atgctaagaa gatttttgtg attggagaag     15960
     tgaagaaaag gtggctcgaa aggtttaatt ttcaagttaa tgatatggtt gattatccag     16020
     agtttgaact cccaacatta gctactgcat gtcctcacca taatggtgcg tatagatcta     16080
     tgtgtgccac ccacaatgtc aaacgaatga aaaaattcta ctttcatatg gaatgggaag     16140
     atgttactga ttctgaagaa gatgtataat aaaaaaactc aatgaaactg tatttttttt     16200
     tgaaattatg tcataaataa atgtattgaa ttatattgtt gttattattt atgtagcctt     16260
     tccctcaaaa ctagtttaag attaaaatat taagaaccga tgattcattc tgataaaaca     16320
     cacacttgcg cagtgcctac actaacgtgt atataaacta atttcggtgc agagtgctgc     16380
     ttagttcatc acgcagcatc aaacgcgacg gatacgcgtt tatatcgcag ttagtacgac     16440
     gcttttgagc tgcaaaataa aaatggagtt ttacgaggat tatgttattg agattagagg     16500
     ttttctggac gcttctcgac agtttttacc aaaagaagtg gctgtggtgt cgcttatgag     16560
     accagcgatc agtcattgga ttgtgcggcc cccgtgcaat ttttccacct tacctatgga     16620
     tgtgcgccaa aacaacgact ttcagtcgaa gcgagtgcat ggacttcgct ggttcgaggg     16680
     tgattgttcc attagaaagt tacagcaaca tttgtacact gtagcaaaaa atgcacatcg     16740
     aatttacgtt tatgaagata atacagccac ttatttggaa tcgaccatag ggtgtactgt     16800
     gattaacatt cagcagtata tggtgccatc gcgtcacatt cttaatatgg gatattcaac     16860
     aaaggcgtta atgtgtggta ctcatgatgt acaaaaaagt ctacgtagaa agcaatattg     16920
     cgcacttagt aaagctcatc aaataaaatt gtggctttgc tctttggtgg aaagtagcat     16980
     tgaaccagac tcagaatgtt ttttagacgc gcttaatagt tataagaaga aattttctaa     17040
     aacgcttccc agttgggata ctgttgatgg aattaatgct aatgatactg atactgatag     17100
     tgactctgga actgatacta atgttggtgt caaaaacgat gaccgtgtgt aggcaaaaaa     17160
     aaaaaagagt aaagtaagca taaaatttaa gatcaaaaaa ttaaagtaca tcttgccgtg     17220
     tggtagtaca aagaaattag cgccgtctta taagctgatg agaatttgcg tattgcttca     17280
     gttatcctgt gacgattgat caggcaacat caacaacatg ggtccgatct ttagcaaacc     17340
     aaaatatgag agcctcagta aggaggagga ggaggaagat aaaaatagcc gaaaacctct     17400
     tttagaaaag cacgttgagg catctcaacc aaaagtgaag ggaaattatt attccgaaaa     17460
     tattcgctct tatccaaata aagatggata tgatatattg aaaaaaaaaa tcaataacca     17520
     tgaaattctt gtgtattttt ttttgaagct accaaaaata tatgtgtatt aaatttaaag     17580
     ttttgttatt attgaaaccc atttacatac tatcctaaaa atctcaaact taaattcata     17640
     agctggctga attccttggc aaggtactgc gtcgagtaag ccaacgttgg tcgcagctaa     17700
     acgggatacg cgatccgcta catccactga taagaaatac acgttcatgc ttgatcatct     17760
     tcctctcgcg ctgtacgttg ggcttgtcac ctacaccttt cggacccatc ctgatgacgt     17820
     cggagctcga ttcgcggtcg gaaaggaagg gagccgtcag taccatccga cgtcacagca     17880
     tccggaagag gcccccttcc cctgacgtta ccatccgagt agtccgcacc acccaccgcc     17940
     cctactacct ataccgcccg tgcccctcct cccaccgccc gatcagcctc tcccccacca     18000
     ccgcctctcc tctaccgccc gatcagcctc tccccccacc accgcctctt ctccacccac     18060
     agctatagct agagcctctc ccccaccact acctcagggg ggagctgggg gggtgccaga     18120
     accgccatgg tttacctact                                                 18140
//
ID   Polinton-5_DSuz repbase;    DNA;    INV; 17092 BP.
XX
AC   .
XX
DT   14-JUN-2021 (Rel. 27.01, Created)
DT   14-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-17092
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 130-130 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 6-bp TSDs. The consensus is ~99%
CC   identical to that of Polinton-1_DBi from D. biarmipes.
XX
SQ   Sequence 17092 BP; 5986 A; 2876 C; 2824 G; 5401 T; 5 other;
     agtagctatt aaaagcggtt gcggaggttt tttaggcggt tttaaatgta ttttgtatga        60
     gttgttttta attgcaagcg tatactcatc ccataatcag tgtgtttggt attccacgga       120
     accctcccgt tttattgcat ttcaaatatt gtgacccctc gttatcttct gagaatgagc       180
     aggagaaagt gaacgtgcgt acccacgaac ccgaatctca ccccctaccc tcgagtcctt       240
     gctcatgact gcttgtgcgc gaaggtgtga aattttaatt ttgtgagttt ttttcaaaat       300
     gtgcagtttt tattttagaa cagagaaaat tataccattg gaaagggctt gaaaaatgct       360
     ttccaatgat accaaatttt tttttttttt tttttagtga gggggtatac tatttagggt       420
     atcggaggtc atcgtcgttt tttgcctttt tcagtcgagt agtgggaata tacgggagcg       480
     gcggttttcg cagcggaggt ttggacgctg ccgagactgc cgctgcgatg acagccgctg       540
     cggtcttata ctctagtttt tcttatatgt tatacgattc cttttgagga gtgtgtctag       600
     gaaaaatgag ctgaagaatc actttaatgt tcaagttgta taagacttat aggatcactt       660
     ttcagggcta aggatatcga aattgtttgt gtctacgata aagttagaag ttagtgtata       720
     gaaaaattag ctgaggatat cgaaattgtt tgtgtctacg attaagttag acgggtgtgt       780
     atagaaaaat tagctagtgg gatcacttta aggtttgtgt tgtaaatttc ttattgggaa       840
     cacttttcag ggtttatatc taaaggccac ccaataatat ttatgtgtag gataagaagt       900
     ttaggtttaa gaatttctta aaacggtgca ctgaagcgga aaattgtacc gaatttcaaa       960
     ttctgcctct ctcgtatatt cccactactc gactgaaaaa ggcaaaaaac gacgatgacc      1020
     tccgataccc taaatagtat accccctcac taaaaaaaaa aaaaaaaaaa tttggtatca      1080
     ttggaaagca tttttcaagc cctttccaat ggtataattt tctctgttct aaaataaaaa      1140
     ctgcacattt tgaaaaaaac tcacaaaatt aaaatttcac accttcgcgc acaagcagtc      1200
     atgagcaagg actcgagggt agggggtgag attcgggttc gtgggtacgc acgttcactt      1260
     tctcctgctc attctcagaa gataacgagg ggtcacaata tttgaaatgc aataaaacgg      1320
     gagggttccg tggaatacca aacacactga ttatgggatg agtatacgct tgcaattaaa      1380
     aacaactcat acaaaataca tttaaaaccg cctaaaaaac ctccgcaacc gcttttaata      1440
     gctactctta gcttaaggct taggaaattc gaatggttgc atcgcgacat cttatgccaa      1500
     tgctggcccg accttaactg accatttatt catatcttgc ttacacagag attgcctttc      1560
     cttaacctat gtcgaagttg cacaccttcg atatttacct acatccagac ccctcctaca      1620
     ccacgttcac ccccggtaac ttgttatcaa tccttgtgtt cgttttcctt ctaataacca      1680
     ttctactggg gtattgggct gctccttatg ttcgagaacc aatcggattg gttctaggag      1740
     tacaacatgc ctgtatgcac tccctgtaga tgtcaacctg ttaagtgaac attctggact      1800
     ataaaaatga caccactcaa attgctcagg atcagttctt caaatgcctc agtactgtat      1860
     tctaataaaa taattagatc cacatcggtc cttgcaatcg cgcctaacaa ttctaatcgt      1920
     gctttttacc ttttaaacga gtgcgtgaaa attgttaaca acattatcgt gctttttacc      1980
     tttataacga gtgggtgaaa attgttaaca acattacaac atataacaat atattttttg      2040
     aataaaaata ttaaaaccaa aaccctaaaa atggagtcat tcgttgcttg tgatttgtgc      2100
     accaaaaatg tggagatgag tgagtttgaa gctcattatg ctcagtgctc aaagcctcgg      2160
     aatgccttcg aggttttaat gtgtaaatca aaaataaggt gtgacttatg ctctacctta      2220
     gttcataatt atgaatttga cgagcactat caaaattgta atggacctat aaatgcattc      2280
     aacgttttaa tgaatgttga aaaacggcaa ccacaaaaca gaaggcaaaa tcatctggac      2340
     gatcatccca caacatcatc aaatgctctc aaacggatga gaatggatga gggtaaggaa      2400
     gtactcaaac aaggaaaaaa agctaagatt agcgaaaata aaaatgattt aaaattagaa      2460
     cttttatgtc ctacttgtgg tgataaatat cttgcatcaa gggaacgtca acacatattg      2520
     accgataagc ataaaaatgc atcagccaga gaagtaaaaa ataatgaaaa cataattctt      2580
     cttaactctc aaactgtttt tcctgttaaa tcatatcgaa tcaatagtac agtccaaaac      2640
     actattgatt taaaagattt ttatcagcat tgccaaaaaa atataattga aattataaag      2700
     cattgcatga tagaatatag agccattaaa ttcaacctaa gagtttatgg tacctatatt      2760
     aaacaaacag acgaaggagt tactgttgaa acaacaaaac attttgggac atcatataaa      2820
     tctgtatacc aaaatgaaag cattatcgat gaacttaata tggcagtaga tagcttacta      2880
     gcatcgagca gtgagtttca agaaaaagac tctggttggg caataaaaaa tttcaattat      2940
     tttgaaatta ctataataaa gctagaaaac attcctgcta gcggatacat tcaggccccg      3000
     aagaatataa gagcccgaaa tgcacttatt aacgtacaga atactgacgt attttgtttc      3060
     aaatggtgca tactggcatt catagctaac aaaactcatg agagtgctac ctttacaamt      3120
     gcaaagcaaa aaaagtattc acgagagaaa atgacgaagc ccacaactta ccacattaat      3180
     attaataatg aaataattgt atatgacgga ataagattgg atttttcagg aatcgagttt      3240
     ccaataacga ataaagggat tatccatttc gagaaaaata ataaagactt tagtataaat      3300
     gtttatgaga tcgatgctga tggtgataaa attatcggtc caacgtttag aaccaaatgt      3360
     attcaaccta accacatcaa tatattggga ataaataacg taaaccaaga cagtatgcat      3420
     tacgcttaca ttacaagtgt aaaaagatta tgctactcac agcattccaa ggccaaatca      3480
     ggaggatatt tttgtgataa ctgtctacag tttttcacag ttaataatac tacccacaac      3540
     aaacttgaat gcgggaaagt ggcctcgttt taccctgaac caaacactac aacttcattc      3600
     aagggctttc ataaaaaatt atctcctccg gtggtgatat atgccgatat tgaggctgtt      3660
     cttgaaaact atagaacatg cctaaattcg tcttcaacgt cgtcaacaac aaaagtgcag      3720
     aagcatactg catgtgccgt atcattttat atagcacata aatataatcc ggatcttaac      3780
     gaattgtgga catatgaagg tatgtaaaaa acaataaata attaatttct tagtatttta      3840
     aaaactaatt caaatttttt ataattttat aggcgctgac tgcatacaaa aattctgcaa      3900
     atcactaaag gaaaaaacta cgagcttgtt ttacatgtac tggtcgaccc ccaaaaaccc      3960
     gattgctagc acaatccatg aacaggaagg aaattgctgt gcctgtgaaa aggaaataaa      4020
     cgctgacgac ctggacaaat attttgatca attttctgga aaatacatgg gtcccattca      4080
     taaaaattgt aagccaaagt acaaattaag tgatcccttc tttcctgtag tatttcataa      4140
     cttatctaaa tatgacatac atttattcat tactgaatta gaaggagact taagccccat      4200
     accctgtaat aaagagcttt atatagcgct aacgcagaca attaaaataa atgcatcaaa      4260
     tagatataaa ataagatata tcgattcgat tagattttta aattctagtt tagaaaaact      4320
     atcgagctac atggaggaca aagattttaa aattctaagt actaaatttc agggagaaaa      4380
     atttaagcaa atgcgtagga agggtgtttt cccttacgac tatttagata gttttgaaaa      4440
     atttgaggat acccagcttc ctgacattga tagtttttac aattctctca gcgaagaaaa      4500
     ttgtagtata gatgattaca attttgcaca aaaggtttgg aaaactttca actgtaatac      4560
     tataaaagat tatataaaac tttatttaga aagtgatgtt ttaattttga ccgatgtttt      4620
     cgaaaatttt agaaaaattt gtcagaaaat ttataagctt gaccctatta actatgttac      4680
     agcaccgtca atatcttggg atgctatgct caagtatact aatgtaaatt tagaacttat      4740
     tagtgacgga gacatgtaca actttttaaa aagagcgata aggggtgggt taactcaatg      4800
     tacccaaaga atttctatag ctaataataa atatataact aacttcgatt caagtaaacc      4860
     aaataactac ctcagctata ttgatgcaaa taatttatat ggttgggcaa tgagtcaacc      4920
     cttaccgctt tcaggattta aatttctaag taatgatcaa ttagaatctt tcgattacaa      4980
     aaatatttct gctgagggaa atgtaggata tatattagaa gtggatttag aatatcctac      5040
     tgatcggcat gactcacata actacttgcc tttctgtcca gaaaacaaag ttcctccagg      5100
     aggtaagcag aaaaaactta tagctgattt atcgaataaa agcgaataca ttatccactt      5160
     aaaacagctt caactttgta tacagcatgg tttaattgta aaaaaaattc atagggtttt      5220
     gtcttttaca caatcatgct ggttaaagcc ttatattgat ttaaacactg atcaaagaaa      5280
     actagcggaa aatgattttg aaaaaaattt ttttaagtta atgaataatg cagtatacgg      5340
     gaaaacaatg gaaaatgtcg ccaagcgtag aaatatagta ttagtaaaac attataaatc      5400
     aagacaaaat tcgccaggct tcaggcaacg catagctaga catgacttcc atagcgttga      5460
     gatatttggg acagatcttg cagcgattga atcaacacca tcaaaaatta tgtatgataa      5520
     gccaatatac ataggagttg ctgttttaga attatctaaa tggttaatgt atgaatttta      5580
     ttataatttt ctattactta aaagtccttc ttcgaaaata atttatatgg atacagattc      5640
     atttatttta tcttcagagg aagactttta cgaaactata aaagaaaatc ctgaacgatt      5700
     cgatacctca aattataaac tagaaaacca atttaatata gttcaagcta ataataggga      5760
     acctggaaaa atgaaggatg aacatgcagg tagggttatg acttcttttg ctggacttaa      5820
     ggctaaggca tactcttgtt tagttgataa ggaaggaaac gaaaacgaat gtataaaaaa      5880
     aattaaagga gttaagaaat cagttattaa aaaactgaat catgaagatt atatagaatg      5940
     tataaaatat aaaaaaacat tttatggatc ccagcgagtt attcgaagta ggtcgcacat      6000
     cctctatact gaaattatga ataaaataag tcttaattat aaggatgata agagatatat      6060
     tttaccagat aattgtaata cattggctca tggtcattat aatattgaac atatattaag      6120
     tagtagccaa aattaaaccc gttattaaat aaatgtttat atgtttatat tataagaata      6180
     aaaatttgta aataaataga taaaaaatta aacttgttat tgttgcgttt tattacttta      6240
     gcaggtcatt tacagatatc catgagttgt ggctggaatc gaaaccgctc cattttacaa      6300
     gcacttgatt atttttcctt tttagtattt tctctactag gaaagcattt ttgtctttca      6360
     ctttttgaag ttcctcttca taaaatgacc cattaatagg ggtacccata taatcttgta      6420
     tttcatatgt tacggggtat gtagacttga cttttaaaac tttaaaaact tctgtggtcc      6480
     aattaggttc gtatcccttc ataaatgctc ccttgtattt acttattcta acaaaatcac      6540
     ctactaaaaa tttatgtttt ggaaatattt ttggtatatt atatactgat tttaaaataa      6600
     actcttcatt tttcgtgcag acatctatag gcttcatttt aattgttcgg tgatatgaat      6660
     tattgtattg atttacgaga taattgatgt tgtgaatcca cttatattta ccctgcatac      6720
     taaacatttt ccacatacga ttttttaatg ttctattaaa gcgttcacat atagaagcct      6780
     tgagatgcgt ataagtatga taatgattta tatcaaattt atccattaat ttcctaaaag      6840
     tggaattaaa aaattctttc ccttgatctg actgaatatt cttgggtgta cttttactct      6900
     ttttaaaaac agatttcatt gcctctgcta catccagggc agactttgac ttaactgcct      6960
     cggcgtatgc atactttgag aacgtgtcaa taacggtcag taaatatcta aaacccttat      7020
     tttctttcca aaacggtatc atttcaacta aatcaatttg ccatgtgtca tttatccctt      7080
     tttgaacgaa ctttcgccgt ataaagtttt ttcgcgctgc cttatgaatt tcatcgacaa      7140
     cttgttgttt gctcatctta aggtgttgat ttattagtgt tattttttat ttgatgacga      7200
     tggttgctta gtcaataatg cttgcttata aacaagaaca tcccttttta tttctgtacg      7260
     catctttttt gaaatttcaa aacataatcg tgttaaatct atttgcacat ccttatcata      7320
     ggtaccttct aaatcagata gttgaatatc aaatttttgt aaagatacac acttaggaat      7380
     aatatgatta ttgtatagat atattacttg ctgtcttaat atggagttcc aacataaaaa      7440
     tgtagtaaaa aatatgccta atctgagtaa tgatctccag gactcagaat caaactcaat      7500
     tttgttacca tactgattaa tcacaaaaac gtactgatta tctgatttcc taaatctaaa      7560
     gttacatttt atggagtgca agcacggatg atcaataatt gtatcaggca tcaagaagtc      7620
     atactggtcc agtttcaact gtataaattc cttatacgta agcagttgca tccattcgtc      7680
     tttgtcaaat ccaatgaaat tgtttttact ttgctgcatc caaaccatcg gcaaaaattt      7740
     tcgagtagtt gacagaccac atttcaattt taagttatga acaacataat actcgaatcc      7800
     aaaaatgact tcgtggtcct gtttctttcg agaagtttta tttcttttag ttacacacat      7860
     gtccatcagg taagactact ttaaataaac tgtaaatatg ttctagtctt accggtatat      7920
     aaaggagaaa gccctagcaa gcacaccctc agttgattaa aaaatctcaa ccaatgatga      7980
     acacagtcga tcgtaattca agcattatag tagattttca atatgtactt ggtaacaaca      8040
     aacaagtttt cgttaaggag ctggcgttta tgcctgctgg aactgttata cctaattttt      8100
     tccatttcaa accgccatat aacataaaag aattggataa tggagctctt aagcagcagc      8160
     accttaacca gcagaacgta aacggattgg attggtcagc tggagatatt ccatacacaa      8220
     gtcttgaaga aatactcaca ccactcaata agtatcacac agttcttgtt cgtggtgaaa      8280
     ttaaaaagaa ttttttaatc aagtatttat caacaaacat aatcgatata gatattggaa      8340
     gaagtttaac tcaactaccc aattttttta cgaattgtag aatacacaag aaaaaacttc      8400
     cacttcgatg ttcattaaat aatttattta agctgtttgt attcttagaa aacaccaatt      8460
     atgaaatata tagtaatggt gacacatgtg tttaaaattt agtaaaaaga aattcatggt      8520
     cctatcaggt tgtctcttat tatggattct tttaagagat tttttggaaa tgatccccgt      8580
     aaaaatggat acacgcaact tatttattgt aattattgcg gatctgatac tcatttcgag      8640
     aagaactgct ccaagaaacg cgatcaagag aatattaata aaacctagta taacttaaaa      8700
     acattatata agcaattagt aataatataa tatattaaaa ttcattccga ataaaataaa      8760
     tttttttaat aaaaaaaatg tttacacaat ttatacatcc ttttacaatg cttatttgtg      8820
     gaccctcagg atcgggaaaa acaacctttt tagaaaatct aatcaccaaa aagaatgatc      8880
     tttttaatat tccaatagat cgaattattt ggtgttatgc agaggagagt gccaagccca      8940
     atttcgaaaa gatagaatat tttaaaggag tccctgaaac agttgaaaat gaaacgaatg      9000
     aaccaattct tttaatattg gatgacttga tgatgggagc ctttaataaa aatgtgtgtg      9060
     agctgtttac aaaaggatca caccatagga atttatcagt aatagtggta actcagaaca      9120
     tatttcataa atcttcgcac accagagata tttcactaaa taccaaatac attgttgctt      9180
     tcaaaaatcc tcgtgataag cttcaatttc aatgtttagc aagacaaatt tacccagaaa      9240
     accccacgga gctatttaga atatataaag aagtaacgga gcaacctcac ggatatttac      9300
     ttattgatct cactcagggc attaacgatc tcttaagatt tagatctgac atttttaatt      9360
     cagaatattc tgtgtgctat tcaaatgaaa atggtttaca aaaagagcct aaatcgcttg      9420
     aaagcgaaca aacatttatt gtatgtgctc aaaaaggccg acaatagact acgtaaggca      9480
     attataagca atagtaatag tgacctggta aaaacaatag tagagattgt attgaacaca      9540
     ttacagggaa accataaagt tactaaatcc catcttaatg ctctaaaaaa gtataaaaat      9600
     gcattgcgct acctttcgtg cccaaagcgt acattaaact ctaagagaaa agtccttatt      9660
     caaaaagggg gatttctacc gattctaata acttcattgc tttctggaat ttttggaaaa      9720
     ctattaaaaa atgattaaga ataaacataa tttaagcaaa gtaattttaa tgcatcctaa      9780
     cagctatcag aaattgataa acaatgatag aggaaatgaa ttaataaata taaaattttt      9840
     accaatatta aataataaca aaataagtga tttcgataaa tggatcaaaa ttcgtcaaga      9900
     attaagttac tatcaaaata aaaaacgtaa taaatcatgg aattttcaaa atgaacaaaa      9960
     agcgaatcct attacaacca aaacaattga atcccaaacc actgattgga ttgatataaa     10020
     acccagcaca tcaaaatcaa catcaaagta cgatcactca cgtccggaaa aatttgagtt     10080
     tcccgattta ccacctgaaa gtgataatga ggattttagt tcaaataaaa aagaaaatgt     10140
     tgtatcagat aaacgaaaag tgagtgatac ctctttttta gatagtgaaa cagataaaaa     10200
     gaaaatagga ttagagaaac cagtgctcaa agtgaagctt aatgaacgac aacgcaaatt     10260
     caaagcaaaa ctacaaaaat tgaaaacgga aactttacct tatcaaaatt ttaaatatgt     10320
     aacaggacgt gaaaggttaa tgcgatcggt tagaacaaaa aatccagtac aaactggtaa     10380
     aaataaatta aattggattt cgtatcatta acttccataa aaatcaaata tgggttattt     10440
     aaatgagatt tttatcacat tgttaagtaa tgactcaatg aatgtatttc ctgacaacgt     10500
     aaagtgtgca tttacaaaca ttgttaacat tccagaagac atgaacgatg attgggaagt     10560
     cggtatttca gacatatatt tgaataatta cattaaatat acacctaacc aagataaaaa     10620
     tgtcgttgaa gaaaccgagt ttgttagtct tgtaaatgct gaaacattta ggtataaaaa     10680
     tgtatccgtt caaacgaata ttcctgaaaa tggattgatt tttatttaca ctgacataat     10740
     aaaaccaagg tcagtaggta gtaaaagacc gcgatgtctt cgtgtaatgc attataatgg     10800
     aaaggaaaaa aatattcaat ttaaaaatat tgaatattac cctttggaca tatggtcacc     10860
     aaatgaaatc tcaatactaa ttactgattc caatggatat aaggtaccat ttgaaacttc     10920
     agctgttccg attttcgtta ctcttcactt tagaagaagg agaaggtcag gactataaat     10980
     aatgcatacc caaatattat ttatttagaa ccaaaatagt catcatggtg aaatcttatc     11040
     aggattatta tgtaaatcag tgtggtgggg gcttaagcaa catcggaagt ctttacatat     11100
     ctccgcatat agtgcaacaa ggacgaggaa tcggaaattt ttttagcggt ctttttaatt     11160
     acataaaacc actttttctt tcgggcataa ctgctataaa aaatcaggct gctgagactg     11220
     gtaaggctgt aatcaatgaa tttgggagaa agcctttaag aaatataatt caagaacaaa     11280
     gtaaaattgc tttacaaaat ctttcaaata aagcaattga taaaattacc cgttttcaaa     11340
     gtggaagtgg aaaaagaaat aaaaggctag gtaataggaa aaaacgactt cattatacat     11400
     ctaaacgaca acgtaaacat acccaaacgc aacataaaaa aaaaaatcaa caagaaaatt     11460
     aaatattaaa gatatttttt ctaaagcaaa atgagtacgc atatcgaatg tatgaaaagt     11520
     gaattagatt tgtttgcggc acaccccacg caaagttcta ttctaagaac tgaagaagtc     11580
     tcatacaacc caattgcttc tttggacggt gcctcttcaa tcgaatttgt ttgcttggga     11640
     aatggtgaaa cgtatcgaga tttatcaagt gtttatttac gacttgttgt gcaacttaaa     11700
     aaaaatgata acaacagcat tgaaggaaat gctgttggtg ttgtaaacaa tattctacat     11760
     tcaatattta gaagttcgtc agtttattta aataatatac tggtatcgca aagtgataat     11820
     aattatcact atagagcgta tttgcaaaca attttaaact atgggagtga cgcctctgaa     11880
     agtcacttgg cctcccaagg ttattttccc aattttggaa gaataacagc agggaaatat     11940
     gtttatccgg actcgaatga aacccttaaa aatatgtttc aaaatagtaa caaggttgag     12000
     ttattcggaa aagttcatgg agatattttc aatcaaacca aactgcttgt taacaatgtt     12060
     gatttaagaa tcaatttcaa tattgaaaaa acagcgtttt atttaatgga aactggtact     12120
     gaatcaaatt taaagatact tgaagcacaa cttttcatga accacataac agttaaccca     12180
     agcattttat tggctcatca ccatgtttta caaacaaaaa atgctctgta cccattcagc     12240
     aaggttgaag tcaaatcatt tacaatatat ccgggcaaca atacactgtc gatagacaac     12300
     gcagttattg gtcaaatacc aaattttctg gccttttgta tggttaaaaa ccgctcatac     12360
     tcaggaaacc gagccttaga cccatttcaa tttgaacatt ttaaaattca acgctttaac     12420
     ctattggtta atggagttca agttccttcc caggctctgg agttcgatta ctcgaacgct     12480
     gaaaaggttc aaagctcaag aggttataat atgcttttta gatcatgtgg aattaaacat     12540
     tacgatcgtg gactacaaat taccaaggaa atgtttgatt caaacagttt tatattagcc     12600
     tttgacttaa ctgctgatca atcaaattca actatatgtt caaatttaat ctctcaaggt     12660
     actataagaa tcgaaggaag attttcggaa ccacttgctg aagcagttac ttgcttggta     12720
     tactgtgaat acgattcaat gattgatatt gataagcata gaaatattcg tacgctcttt     12780
     taaaatgaat actttacaaa ttgaacattt tctttctaag cattcaaaga caaaatctat     12840
     ttttaaagga gtttttcctt cggataggtt accaaaaact attttaaagt atcccgcact     12900
     aataattgcg aataccgaca cttcagatca acctggaact cattggattg cattttattt     12960
     tgatagtcgt aggtcggcag aatttttcga ttcatatggt caatatcccc agaaaaaaga     13020
     atttttaaaa tttttaaaat ctaacgctta taaatttttt tttaataagc aacaactgca     13080
     gggatacttt tctaacactt gcggacatta ttgtatgctg ttcggtcttt ttaaaagtaa     13140
     aaagaaaaca ctaaattttt ttttaagaaa attcaagaaa aacgactatt catttaatga     13200
     taaattaata ataaaaatgt ttaagaacca ttttaaaaaa taaaaaacat atatatttaa     13260
     gtaaaattaa ttcgttttat ttatggtttt ggagcaatac gtttgtttaa cttataatat     13320
     ttaatcatta gactaagggc ttcctctttc agtgcaggca gcatatgaca ctgacatgtg     13380
     tctggtccag atgaggcatc atcgtcgctc cagggacaaa gtttataatg gaatccaaac     13440
     ttcgaatgga tcaactcttt ttcctctaaa tcctccaaag tagcttttag gaactccatc     13500
     ctttgtaggt gttgctcgaa aagcatgcct tcaaattgca tcaagaatag ttctatctgt     13560
     tgagcgtaca tttttaagga aaactatttc tttttgagac tgatttaaga ctgttgttgg     13620
     atttaaaaac tcagctcttt atattgaaga atcttattta ctttacttat ttactgataa     13680
     aaattcaatt tgagcacaac tatatctgtt cagatctttt cctttatata ccatatgagt     13740
     tattccattc tcatttaatt tcctaaatgg tgtctttgta gaaaatttgt tcacataact     13800
     tttaggtaga aatatccaaa catctttatc gtccttatca gttaaataca gagctatttt     13860
     agttccatat ggtgtctttt tcagcttaca tccagtgatc ttatactcaa atccaataca     13920
     tagattttca atttttgtgt agccaatcac aggcttcacg tcatttaagg tctctaagaa     13980
     gtcctatcaa attcaacaaa attaggtgat aatgtattta cttttaattt atatgcatac     14040
     catttttgat cagcgtaaga ttggattcgt cgtgcactag tacctaactg ttgtatacta     14100
     attctttaac cagaaattac atggtctttt atacttgtca aaaactatac atttctatca     14160
     attcatgtgg agtaaatgag ataacaatat gtcttcatta tatgtaccaa aatacttatt     14220
     caaactatgt aatacttgag aataaagtca gaaatacata tcagtatgtc tatctctttt     14280
     tatatttata taaatctttc aatagcgtta aaataaagtt agtatatata acgtaagaat     14340
     tgtccctcaa atgctatata agatacattt tttatagaaa agtcagttta tttttaaaaa     14400
     catcgaaatg gtgaagtacc attgcgagtt gtgttcagaa acaaaatcct ttactactcg     14460
     cagcggccta aaagcgcata ccttaaaaat acacaacttc gcctatcaga aatctaaatc     14520
     ctccttttat tattgttatt tctgtcctaa agtacggaaa atttggttgc gatacgactt     14580
     taatatgcat cgtctattgg ttcacaacgc agagctaaaa agtatttgta aggcaaagaa     14640
     aaattgttca ataaataaaa aacaattata agccctcaat tttaaaatag tttttacttt     14700
     atttttcttt atgcatcgtg tatttataat taaaaagtta agaatctagg tcaaataaaa     14760
     catctagtaa tgcgtcgtca tctccatcat ccagcaaagt taaataatgg ttagtcggtg     14820
     gcggttgagg tcccataagt tcttcaaaga tgtggtcgtc gttaggaaaa acctcatctt     14880
     ctggcctgga taggtcgtcg tccaattgaa attcctgtgc acactgaaat acatcttcac     14940
     cttcttcgtg tgtgataagg gattccaaga aagcctgcgt agtagtcccc aatggaaact     15000
     ggctccactc aagagactcc aatcctgggt ccctattttg ggtcgacgat gcagccggtt     15060
     gaaatacgct ttgtagaagg cgatcaaccg aatcttctgc ttcggaaacc tgcacaaggt     15120
     ccagatccga gttttcgatt atttcaagat cagaatcttg cgtgggtggt aattccaggt     15180
     tgtcaatctc aacctcgttt tccgaatcga taaattctac ggttagatcc ataggtatgc     15240
     agtactgagg catttgaaga actgatcctg agcaatttga gtggtgtcat ttttatagtc     15300
     cagaatgttc acttaacagg ttgacatcta cagggagtgc atacaggcat gttgtactcc     15360
     tagaaccaat ccgattggtt ctcgaacata aggagcagcc caatacccca gtagaatggt     15420
     tattagaagg aaaacgaaca caaggattga taacaagtta ccgggggtga acgtggtgta     15480
     ggaggggtct ggatgtaggt aaatatcgaa ggtgtgcaac ttcgacatag gttaaggaaa     15540
     ggcaatctct gtgtaagcaa gatatgaata aatggtcagt taaggtcggg ccagcattgg     15600
     cataagatgt cgcgatgcaa ccattcgaat ttcctaagcc ttaagctaag agtagctatt     15660
     aaaagcggtt gcggaggttt tttaggcggt tttaaatgta ttttgtatga gttgttttta     15720
     attgcaagcg tatactcatc ccataatcag tgtgtttggt attccacgga accctcccgt     15780
     tttattgcat ttcaaatatt gtgacccctc gttatcttct gagaatgagc aggagaaagt     15840
     gaacgtgcgt acccacgaac ccgaatctca ccccctaccc tcgagtcctt gctcatgact     15900
     gcttgtgcgc gaaggtgtga aattttaatt ttgtgagttt tgttcaaaat gtgcagtttt     15960
     tattttagaa cagagaaaat tataccattg gaaagggctt gaaaaatgct ttccaatgat     16020
     accaaatttt tttttttttt tttktggggg tatactattt agggtatcgg aggtcatcgt     16080
     cgttttttgc ctttttcagt cgagtagtgg gaatatacgg gaggaggcag aatttgaaat     16140
     tcggtacaat tttccgcttc agtgcaccgt tttaagaaat tcttaaaact aaacttctta     16200
     tcctacacat aaatattatt gggtggcctt tagatataaa ccctgaaaag tgttcccaat     16260
     aagaaattta aaacataaac cttaaagtga tcccactagc taatttttct atacacaccc     16320
     gtctaacttw atcgtagaca caaacaattt cgatatcctc agctaatttt tctatacact     16380
     aacttctaac tttatcgtag acacaaacaa tttcgatatc ctcagccctg aaaagtgatc     16440
     ctataagtct tatacaactt gaacattaaa gtgattcttc agctcatttt tcctagacac     16500
     actcctcaaa aggaatcgta taacatataa gaaaaactag agtataagac cgcagcggck     16560
     gtcatcgcag cggcagtctc ggcagcgtcc aaacctccgc tgcgaaaacc gccgctcccg     16620
     tatattccca ctactcgact gaaaaaggca aaaaacgacg atgacctccg ataccctaaa     16680
     tagtataccc cctcactaaa aaaaaaaaaa aaaaaatttg gtatcattgg aaagcatttt     16740
     tcaagccctt tccaatggta taattttctc tgttctaaaa taaaaactgc acattttgaa     16800
     maaaactcac aaaattaaaa tttcacacct tcgcgcacaa gcagtcatga gcaaggactc     16860
     gagggtaggg ggtgagattc gggttcgtgg gtacgcacgt tcactttctc ctgctcattc     16920
     tcagaagata acgaggggtc acaatatttg aaatgcaata aaacgggagg gttccgtgga     16980
     ataccaaaca cactgattat gggatgagta tacgcttgca attaaaaaca actcatacaa     17040
     aatacattta aaaccgccta aaaaacctcc gcaaccgctt ttaatagcta ct             17092
//
ID   Polinton-5_LMi repbase;    DNA;    INV; 16418 BP.
XX
AC   .
XX
DT   12-JUN-2014 (Rel. 19.11, Created)
DT   12-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-16418
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(11), 3025-3025 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(7889..7794,7833..6940,7121..6795)
FT                 /product="Polinton-5_LMi_1p"
FT                 /translation="MDSVFDLVQDCLSVLNENKRYLQSASPPCGGETVSAK
FT                 CFSTMRRRITNTLDNSCCVVFNSVLQFMYWGNKNTRKLTGVQVNLPDTKDR
FT                 EKLIHYVLSAFSFNCLPVNYVEIRNTDTSKDDISSTLKSYIKAGETYFSQS
FT                 RTLFSTLPPDIDIAELGLAPTNNVIPQVQRKRVNVSHRLKPFPIKEITPLR
FT                 AVNVLCARKRKLEMADIDAKRRKLEYMAKATAIKDEYKLMLEKDEAMADVQ
FT                 ARFTYGFKQRVWRNLVTTGTYKIFAFTVNSQGDWSRVGVLAENSGTQNVFY
FT                 AKNVLHSRLEKGYIVSKCGGLGVGAAICRVKNGWNNNITVREIGHASVYWP
FT                 KIAEHRTSSTRKTCCILVWRRATLYPNVEDWVLEQPFAELKTDGITISNKQ
FT                 SFAIVVNLVFHTEITTGLCIRGVGTYTHRDASAIPVCHTGNNGKS"
FT   CDS           join(8320..8619,8701..8994,9097..9501,9393..9620,
FT                 9678..9971)
FT                 /product="Polinton-5_LMi_2p"
FT                 /translation="NLRKHCTSRLYGGYLVLRLEISVKTIIWRTSWSLTRG
FT                 ESAGCGVNFVIRGLIYPKKRDRGLFAAFEHLLRRWVKNKVLQGWRLQYTIT
FT                 GWIVFLTLCKTVHSCCVVFNSVLQFVYWGNKNTRKLTGVQVNLPDTKDREK
FT                 LIHYVLSAFSFNCLPVNYVEIRNTDTSKDDTSSTLKSYIKAGETYFSNPEH
FT                 CSPHCLQIRNYTATCINVLCARKLEMADIDAKRRKLEYMAKATAIKDEYKL
FT                 MLEKDEAMADVQARFTYGFKQRVWRNLVTTGTYKIFAFTVNSQGDWSRVGV
FT                 LAENSGTQNVFYAKTCCILVWRRATLYPNVEDWCWSSHLQSRNTERLLREN
FT                 VLHSRLEKGYIVSKCGGLVLEQPFAELKTDGITISNKQSFAIVVNLVFHTE
FT                 ITTGLCIRGVGNVHTNARLFSSRSIARRCRAGYKSYKGGGMQEETKIRNGV
FT                 REHTFPVPFELLAGTEIGDADVDLNYKLKIKLDKIKVTPNKNKERVVFCMY
FT                 ITLFPVCKHVC"
XX
SQ   Sequence 16418 BP; 4720 A; 3485 C; 3479 G; 4730 T; 4 other;
     agtagtakgg tagtgccggt ttcacgccac tgagattcgc ccgtcgacga tagtgtcatc        60
     gacgccagac gctcggccaa ttgccggacc gcagatcaaa ggatgccgcc acactcgaac       120
     aatagcgcac ttaaggatga ttgacaggtt acatgaaagt gcacttaaca ctggtgcact       180
     taacacttgc aagtaaacaa caccccccct ccacccccgg cgccgccgcc agacaggcgg       240
     cacctccgac aggtccagac ctgtccaccc ccgccagact gacgccacat ccccccgccc       300
     ccagccacgc acctggccga cacgccgccc ccgacagacg cccaattgcc cgacctccgc       360
     ctccagttaa ttaaattaaa tttgcatatc aatttaattg taactaccta tgtttttaac       420
     agtaacaagg gcaactgcct ccagaagtaa gcacttgcgt gagcacagac cccgcccccg       480
     ctaccgcccc ccacctccac cccaccgaca gtcctaaaga ttgccgcccc ccgcgcgacc       540
     cgatccggga ctcgaacccg cgcccctaga attttttttt tttttttttt acgaaagtta       600
     ttgcttatag acgtacacca acattgggaa aaaaaggagc caattattat tgcatacttc       660
     ggacagtaca attacctgga ataacacgag agtttcgtaa acaaattgac cctgccagcc       720
     gccaggccag cgaccaccgc tcccaattat taagtgcgat accatgtgtt ttaattagga       780
     cattacgtcg ctacatatag tttaatacat cgaaccaggc tttaagcaag tttagttgcg       840
     ttgtatgcct tggatggact tgttcttctg cttagatgtt aatggagaag tgattcgaga       900
     tagcatagcg gttaggtgtc tcgtatctga ttaacaccac gtcttctgct aatgccagtc       960
     gttacaaccg ataaacaaac gtaacaccca accaattacg tcgtaaaatg atccagcact      1020
     tcgatagagt aacaaatgta aagtaatata gttacaaacc atccgaacac acaattcccc      1080
     aacaagagcc gcgtacttag aggttctgtg ggtcaaaaga ctctccttgt aacgatctcc      1140
     acccgtgcat tttaggacta atgttccgtc tgctagccta ggcaaaataa ctgtatagac      1200
     gatgctcaca acagccgacg aacgtaatgt aacggtaacg accatcccaa acccgagtgt      1260
     caaacactgt agacgtgtaa cacaatttcc ttaacaattt ctctcggaaa cggtacgaac      1320
     gatcctcgtt taaacgctta acagtaacgt agctagatct ccagcgcgat cacaaacaca      1380
     gtgttctctc gacaggctac ataaaataag catatgctaa atgtttttaa aaaaattcat      1440
     acctttttaa gcatcctctc tcaaaaaaaa aacatctgag ctacatatcc aaataatcaa      1500
     aaccttctac gcaagacctc tgcacacaca ccactttgac gaggatagcg cgcattgcat      1560
     ttatttaatg gaactggacc cagctgagtt ttgacaacag agggcactgt cgacccccct      1620
     cccaaaagca aacatgcttt cacatacaag ccccatctaa cgacaacccc cctctctctc      1680
     tctcgtgcaa atcataccag tcgcacttaa aattatcaag ttctgaaatt taatactccc      1740
     tctcgtaccc tgttacaata cacataattc tttccgaaac ataccaacag ttccttagat      1800
     cgacgcatcg ctgtctccca cataagtttt cggtcttccc gtaaaccacc acttttatgg      1860
     ttttatacgc cttccgacaa ttccgagaat tcgggtagtt taattccacc tcctgcgtat      1920
     acccatctaa ggaatctcta tgtcctgtta caatgcaaac gattctttac aacaggtcaa      1980
     atatcgatat tcgagcagcc cagaagacat ttaaacccta ttgtacaacg gagaatcaca      2040
     ataaaaaatg tgtgaaataa ttttccgatt tccgacagtc tacactaaaa ctttttttct      2100
     cgaaagtatt ggcctaacaa cacccttatt cgacaataca gtaaccacgg aaccgaggta      2160
     gtactatacc tgcccaatgc aacacagatt ttcagaacaa gatcgatcag ccctttaccc      2220
     acaaaaattc ctactccaag ttcctttcct gtgacttctt ttttcattcc actaaaccga      2280
     actcgaattt atttttttaa agtagctgtc taccgcaaac gaagatgcta acctacacac      2340
     cagaaaattt atagccaaca aacctcgcat atttcgaagc cctgtgtcaa agtacaggcg      2400
     atgatagaag acccacccta ataataatag tagacacagc gaaatttagt agaccctcta      2460
     gaggccaaaa cattcatcaa cgaggccgta tgcactatca tcctctctct cggaatagta      2520
     ttacacaaac aaaaacgttt aaagacgaaa gtagtgcgcc ttagggctca aacgacagca      2580
     cacaacgcag gaaaacgcga catcgatcat aatatttcta cgcattacca tgcaatcgca      2640
     atcaactacc ccttaagacc gcaaacgtcc cagagtgcgc tagatttacg gacacaccag      2700
     tcaattttcg gtgttattaa cccagcaaaa cacagcacaa gaactgctct ctaaggaatg      2760
     gctgggagtg acacagtaca gggctgcact ttgtaaatat tggctgtccc cgttcccgat      2820
     ctagtcctta agtgtatcgg tcaatacaac gacgcgagac caatcccccg ggctgtttag      2880
     tgtaaaagca aatatttttt aagacgtaat cgtagctata tttctccaca ctatctgttt      2940
     aaaccgggct tgcacatatg caatagcctc ctttaaagcc tttgtcttcg ccatataacc      3000
     cagttttcgt ttacccttct tcttaggact tgtggaataa cgtaggcgat atctacgtct      3060
     gtggagaata aagtcctgga atgctaaaat atgctttaat atagctcctt gctcgactct      3120
     ccaagtaatt tacaggtaga cagttgaaac taaaacataa tgtataagct tttctcggtc      3180
     cgagagagcg gtcaattttc gggtactctt aatacccaag taatcaaatt gcagaataac      3240
     tgatctctaa aagcgtatgt tagccgggac catatggatg ggagcgatgc acagtacaac      3300
     ggcgcacttt gtaaataccg tatcttctct tttagaacac ttaaacaatc ttcttgcaca      3360
     gatccataac cacaatcctc catcctggta atgccatctt ctcgacccag cgaaaaaata      3420
     aaagtcctca caatcgcctg tctggacgct ttataaaatc gatattgtag ctaccgataa      3480
     ctttgcttac accagggctc gtgatttgac aaatatttat tatttatttt gattctacaa      3540
     ttcgacgcca accacgttaa gcagtcgttt ccagttgtct tgtcgtcgcc cgcaaccacg      3600
     ttgctgttgc tccttccatc cgaaagtcat gctcggatac gaacgccact cggttaaaaa      3660
     aaaaatccct tcgaaatctt gtgtgttgtc caaatccagg agatagaagc catctacacg      3720
     aagctgctgt agtatagatg ggagctcctc cattaaaaca tcgattagtt gcactttata      3780
     agatatatac ccacaggacg tacatatttc ccccctgtat tccacaaagt agccacaaat      3840
     agtaacttcg tcttatctcc agcgtttgca gtatcgaact tgctgaattt actacgcagg      3900
     tagatccgca catctataac aatacctcac cacacacgca ctccactggc tacaactagc      3960
     gcactttaag ttaccaaact ataggagttt tataaaacac gttgattttc gacgaaagaa      4020
     ttatgattta ccacagcagg catatccgct acgtaacata atgcacacca gccgtaaagt      4080
     agacaacact agcatacgat taaacaggcg atkcttcgac gaaagatcag ataacgtaca      4140
     cactgcaaag tttttttaca accaccaaag tcggcttctt tagagctcta ccgcgacgtg      4200
     tatttagagt atatcaacac tttttactta aattccatcc catctagcct acagcactct      4260
     ctgtaagcgc caaacatttc caacacagta acagaactac acctgcagtc aacactaacc      4320
     tacaacaaac ggatctagcc attccaactc gttttttaca aaatttttga cccaactagc      4380
     atgctgcaag ctctgtatac gtccgtaaca acctccaaac gcaacccagg cagggctatc      4440
     cttacagtcg tcactaaccc agtaccaact ctaagttcct ccacatacac tccgcataaa      4500
     caagttacca cagacggtgt tataaccgcg atcagtaaca gacaagatct cccagacaca      4560
     gcgcatttta ataaagtttc gatctctccc cacccaataa ctgcattggt tgcttgaccc      4620
     gtcccaaaca tccaaccaca actttgtttc caatgcatag cccggcagac aatatttctg      4680
     gaacgctttc tatcagtcaa tagactacat acctcgtgcg tttaacgagc attcgcgcac      4740
     aaaccaccat cgtattccac tccttctaac aaattattac tctcgataaa catctgtaac      4800
     acagtgtaaa aaatgatcga cgtgcacacg cacagaacag ctaacaagaa aagatctaga      4860
     tcaaagccaa gttcttataa tccttacaag cagcaacgca aaatagtcta caccatttcg      4920
     aactaataca acaccagatt tttttatcga tctccaagag caatccttta gagactaaac      4980
     atacgattaa acgcacctcc caacgtaggt aactaatcct ctttaagtta tctaactcga      5040
     tgcttatcga ccaaagaaca ttaatttacc actgcaatca tctccgatac gctaccgaga      5100
     gacgtccatt cgtaaacaca gctaaaagaa gatataaata ccccacatcc atagcacata      5160
     accatgctac taagtatcta tatgcatttc cacaattgtg gatcacatct gcgttgcatc      5220
     gaatcgcacg actaaacagt tcgaaatagg tatttcgcgc aagctagcat gcatactcac      5280
     attccatgct atttccggct gcaggcgagt gcggacctgt tgactcatcg tagacgctgg      5340
     tttggagcgt gtacgtccta tacatgtaaa cataccagtc gacgctcgca cctgacctgg      5400
     agaagttatc ggtttaattt ttcctggccg caccagattc cgaatacacg agagctattt      5460
     ttacgaagat agaattacgt tgattgtaac aacagacata agaataaaaa acgatcgaaa      5520
     tgccacagct ataccatagc tcttaataca ccatcatccc aataaagaca gcctttacaa      5580
     cccataaaga gacaaccgca cacatgcgta ttaccgacaa atactgcaac atttcctcgc      5640
     agctgacaca aacgatgttt ttaccgtacg agatgactac agcagtcgtt ataactttta      5700
     tacgcagata catacacaga cagtaggatg agcgctaatt tgcgatgtag ctattacaga      5760
     aacgaaacat agtttttttt agaaaatcga taagaagaag aacgaaattt atacaagatg      5820
     aaccaatgtg caataagtca aaccccactc catacagcaa tgtaccgagc aacatcgatt      5880
     taaacgaacg ctttgcttag ctgtagaata gaacaacaca gaattacatc tccctaacag      5940
     atactttacc gagggagtta ctgctctctg acaacaagca acctgtcttc tggtatcttc      6000
     tcctaaaccc tgtaagaccg aaacgttcta ctcgagaagc tataagtctt tacaacaatt      6060
     aactgttgca gatgcaaact attacagatt ttaggtaatc acatcgacaa agaacgggat      6120
     tacaaccctt ttttaggtca aaagtagcca cagatcggag aaattcaaat caaaaccact      6180
     ggttccttac ctagtaagac acctagatgt tattcgaaaa atgctttttg cgtgatcatt      6240
     ctatacaaag aaccatttaa aataaaaaaa acagcacgtt attgtacaac tctttaaccc      6300
     taaccacttc ttcttgtact cggtggatgt ccaaatgcgg ctcatactaa gcaaaaactg      6360
     ggagattcgt acatcctata ctaatcctct cgcacaacag agccagtacc tttaatctta      6420
     tgctttcgta gaatttttat taagatagta aataagaaca caagttttac agcacaaaac      6480
     ttttattaca tttagcatac atgtttacat acaggaaaca aggttatata tataacacag      6540
     aatacaactc gttctttatt cttgttaggt gtaactttaa ttttgtccaa tttaattttt      6600
     aacttgtagt ttagatccac atcggtgtct cctatttccg ttccagccag aagttcgaaa      6660
     ggtacaggga aggtatgttc tcgaactcca ttacgtatct tcgtttcctc ctgcattcca      6720
     cctcctttat agcttttata accagctctg caccttctgg caatgcttct agacgagaac      6780
     aatcgggcat tttaactttt cccattattt cctgtatggc atactggtat agcacttgcg      6840
     tccctatgtg tgtacgtacc aactcctctg atacacaatc ctgtggtaat ttccgtatgg      6900
     aacactaggt ttacgactat tgcaaacgat tgcttgttag atattgttat tccatccgtt      6960
     tttaactctg caaatggctg ctccaacacc cagtcctcca catttggata caatgtagcc      7020
     cttctccaaa cgagaatgca acacgttttt cgcgtagaag acgttctgtg ttccgctatt      7080
     ttcggccagt acaccgacgc gtgaccaatc tccctgactg tttactgtaa aagcaaatat      7140
     tttataagtc ccagtcgtaa ccagatttct ccacaccctc tgtttaaagc catatgtaaa      7200
     cctggcttgc acatctgcca tagcttcgtc tttctccagc attagtttgt actcgtcctt      7260
     tatggcagtt gctttagcca tatattctag cttccttctc ttggcgtcga tatccgccat      7320
     ttccagtttt ctttttcgcg cacataagac attaactgca cgtagcggtg taatttcttt      7380
     aatggggaat ggcttaagtc tgtgcgatac atttactctt tttcgctgga cttgtggaat      7440
     gacattgttt gtaggtgcca gacctaattc ggcgatatct atatctggag gcagtgtgga      7500
     gaacaatgtt ctggattggg agaagtatgt ttcccctgct ttaatgtagc ttttaagtgt      7560
     actacttata tcgtctttgc tggtgtcagt attacgaatc tccacgtaat ttacaggtag      7620
     acaattgaaa ctaaaagctg atagaacata atgtataagc ttttctcgat ctttagtgtc      7680
     tggaaggttt acctgtacac ctgtcaattt tcgggtattt ttattacccc agtacataaa      7740
     ttgcaggaca ctattaaaca ctacacagca gctgttgtct aaggtgtttg ttattcgcct      7800
     ccgcatggtg gagaagcact ttgcagatac cgtttattct cgtttaaaac acttaaacag      7860
     tcttgcacaa ggtcaaaaac actatccatc cggtaattgt atattgtagc ctccagcctt      7920
     gtaatacctt gttcttgccc caacgacgaa gtaagtgcat caaatgcagc aaatagacct      7980
     ctgtctctct ttttagggta aatcaagcac ggatcacaaa attcacacca caaccagagg      8040
     attctcccct wgtaagactc caggacgttc tccaaattat ggtttgactg atatttccag      8100
     gcgaagtact aaataacctc catataggcg agaggtacaa tgcttccgta gattctaggt      8160
     gcgttcttcg ggacktgtgg tatagagaca gattgaccag acggcagagt acggctcctt      8220
     acatatgact gttagttaat tagattgaat agtacggtgc tgcactctgc cgtctggtca      8280
     atctgtctct ataccacaag tcccgaagaa cgcacctaga atctacggaa gcattgtacc      8340
     tctcgcctat atggaggtta tttagtactt cgcctggaaa tatcagtcaa aaccataatt      8400
     tggagaacgt cctggagtct tactagggga gaatccgctg gttgtggtgt gaattttgtg      8460
     atccgtggct tgatttaccc taaaaagaga gatagaggtc tatttgctgc atttgagcac      8520
     ttacttcgtc gttgggtcaa gaacaaggta ttacaaggct ggaggctaca atatacaatt      8580
     accggatgga tagtgttttt gaccttgtgc aagactgttt aagtgtttta aacgagaata      8640
     aacggtatct gcaaagtgct tccccctcca ccatgcggag gcgaataacg aacaccttga      8700
     cacagctgct gtgtagtgtt taatagtgtc ctgcaatttg tgtactgggg taataaaaat      8760
     acccgaaaat tgacaggtgt acaggtaaac cttccagaca ctaaagatcg agaaaagctt      8820
     atacattatg ttctatcagc ttttagtttc aattgtctac ctgtaaatta cgtggagatt      8880
     cgtaatactg acaccagcaa agacgataca agtagtacac ttaaaagcta cattaaagca      8940
     ggggaaacat acttctccaa tccagaacat tgttctccac actgcctcca gatatagata      9000
     tcgccgaatt aggtctggca cctacaaaca atgtcattcc acaagtccag cgaaaaagag      9060
     taaatgtatc gcacagactt agccattccc cattaaagaa attacaccgc tacgtgcatt      9120
     aatgtcttat gtgcgcgaaa actggaaatg gcggatatcg acgccaagag aaggaagcta      9180
     gaatatatgg ctaaagcaac tgccataaag gacgagtaca aactaatgct ggagaaagac      9240
     gaagctatgg cagatgtgca agccaggttt acatatggct ttaaacagag ggtgtggaga      9300
     aatctggtta cgactgggac ttataaaata tttgctttta cagtaaacag tcagggagat      9360
     tggtcacgcg tcggtgtact ggccgaaaat agcggaacac agaacgtctt ctacgcgaaa      9420
     acgtgttgca ttctcgtttg gagaagggct acattgtatc caaatgtgga ggactggtgt      9480
     tggagcagcc atttgcagag ttaaaaacgg atggaataac aatatctaac aagcaatcgt      9540
     ttgcaatagt cgtaaaccta gtgttccata cggaaattac cacaggattg tgtatcagag      9600
     gagttggtaa cgtacacaca tagggacgca tagtgctata accagtatgc catacaggaa      9660
     ataatgggaa aagttaaaat gcccgattgt tctcgtctag aagcattgcc agaaggtgca      9720
     gagctggtta taaaagctat aaaggaggtg gaatgcagga ggaaacgaag atacgtaatg      9780
     gagttcgaga acataccttc cctgtacctt tcgaacttct ggctggaacg gaaataggag      9840
     acgccgatgt ggatctaaac tacaagttaa aaattaaatt ggacaaaatt aaagttacac      9900
     ctaacaagaa taaagaacga gttgtattct gtatgtatat aaccttgttt cctgtatgta      9960
     aacatgtatg ctaaatgtaa taaaagtttt gtgctgtaaa acttgtgttc ttatttacta     10020
     tcttaataaa aattctacga aagcataaga ttaaaggtac tggctctgtt gtgcgagagg     10080
     attagtatag gatgtacgaa tctcccagtt tttgcttagt atgagccgca tttggacatc     10140
     caccgagtac aagaagaagt ggttagggtt aaagagttgt acaataacgt gctgtttttt     10200
     tattttaaat ggttctttgt atagaatgat cacgcaaaaa gcatttttcg aataacatct     10260
     aggtgtctta ctaggtaagg aaccagtggt tttgatttga atttctccga tctgtggcta     10320
     cttttgacct aaaaaagggt tgtaatcccg ttctttgtcg atgtgattac ctaaaatctg     10380
     taatagtttg catctgcaac agttaattgt tgtaaagact tatagcttct cgagtagaac     10440
     gtttcggtct tacagggttt aggagaagat accagaagac aggttgcttg ttgtcagaga     10500
     gcagtaactc cctcggtaaa gtatctgtta gggagatgta attctgtgtt gttctattct     10560
     acagctaagc aaagcgttcg tttaaatcga tgttgctcgg tacattgctg tatggagtgg     10620
     ggtttgactt attgcacatt ggttcatctt gtataaattt cgttcttctt cttatcgatt     10680
     ttctaaaaaa ctatgtttcg tttctgtaat agctacatcg caaattagcg ctcatcctac     10740
     tgtctgtgta tgtatctgcg tataaaagtt ataacgactg ctgtagtcat ctcgtacggt     10800
     aaaaacatcg tttgtgtcag ctgcgaggaa atgttgcagt atttgtcggt aatacgcatg     10860
     tgtgcggttg tctctttatg ggttgtaaag gctgtcttta ttgggtgatg gtgtattaag     10920
     agctatggta tagctgtggc atttcgatcg ttttttattc ttatgtctgt tgttacaatc     10980
     aacgtaattc tatcttcgta aaaatagctc tcgtgtattc gaatctggtg cggccaggaa     11040
     aattaaaccg ataacttctc caggtcaggt gcgagcgtcg actggtatgt ttacatgtat     11100
     aggacgtaca cgctccaaac cagcgtctac gatgagtcaa caggtccgca ctcgcctgca     11160
     gccgaaatag catggaatgt gagtatgcag cgcgcgacct atttcgaact gtttagtctg     11220
     cattcgatca acgcagatgt gatccacaat tgtggaaatg catatagata cttagtagca     11280
     tggttatgtg ctatggatgt ggggtattat atcttctttt agctgtgttt acgaatggac     11340
     gtctctcggt agcgtatcgg agatgattgc agtggtaaat taatgttctt tggtcgataa     11400
     gcatcgagtt agataactta aagaggatta gttacctacg ttgggaggtg catttaatcg     11460
     tatgtttagt ctctaaagga ttgctcttgg agatcgataa aaaaatctgg tgtttattag     11520
     tcgaaatgtg tgactttgcg tttaaggatt ataagaactt ggctttgatc agatctttct     11580
     tgttagctgt tcgtgcgtgt gcacgtcgat catttttaca ctgtgttaca gatgtttatc     11640
     gagagtaata atttgttaga aggagtggaa tacgatggtg gtttgtgcgc gaatgctcgt     11700
     taaacgcacg aggtatgtag tctattgact gatagaaagc gttccagaaa tattgtctgc     11760
     cgggctatgc attggaaaca aagttgtggt tggatgtttg ggacgggtca agcaaccaat     11820
     gcagttattg ggtggggaga gatcgaaact ttattaaaat gcgctgtgtc tgggagatct     11880
     tgtctgttac tgatcgcggt tataacaccg tctgtggtaa cttgtttatg cggagtgtat     11940
     gtggaggaac ttagagttgg tactgggtta gtgacgactg taaggatagc cctgcctggg     12000
     ttgcgtttgg aggttgttac ggacgtatac agagcttgca gcatgctagt tgggtcaaaa     12060
     attttgtaaa aaacgagttg gaatggctag atccgtttgt tgtaggttag tgttgactgc     12120
     aggtgtagtt ctgttactgt gttggaaatg tttggcgctt acagagagtg ctgtaggcta     12180
     gatgggatgg aatttaagta aaaagtgttg atatactcta aatacacgtc gcggtagagc     12240
     tctaaagaag ccgactttgg tggttgtaaa aaaactttgc agtgtgtacg ttatctgatc     12300
     tttcgtcgaa gcatcgcctg tttaatcgta tgctagtgtt gtctacttta cggctggtgt     12360
     gcattatgtt acgtagcgga tatgcctgct gtggtaaatc ataattcttt cgtcgaaaat     12420
     caacgtgttt tataaaactc ctatagtttg gtaacttaaa gtgcgctagt tgtagccagt     12480
     ggagtgcgtg tgtggtgagg tattgttata gatgtgcgga tctacctgcg tagtaaattc     12540
     agcaagttcg atactgcaaa cgctggagat aagacgaagt tactatttgt ggctactttg     12600
     tggaatacag gggggaaata tgtacgtcct gtgggtatat atcttataaa gtgcaactaa     12660
     tcgatgtttt aatggaggag ctcccatcta tactacagca gcttcgtgta gatggcttct     12720
     atctcctgga tttggacaac acacaagatt tcgaagggat ttttttttaa ccgagtggcg     12780
     ttcgtatccg agcatgactt tcggatggaa ggagcaacag caacgtggtt gcgggcgacg     12840
     acaagacaac tggaaacgat tgcttaacgt ggttggcgtc gaattgtaga atcaaaataa     12900
     ataataaatt atttgtcaaa tcacgagccc tggtgcaagc aaagttatcg gtagctacaa     12960
     tatcgatttt ataaagcgtc cagacaggcg attgtgagga cttttatttt ttcgctgggt     13020
     cgagaagatg gcattaccag gatggaggat tgtggttatg gatctgtgca agaagattgt     13080
     ttaagtgttc taaaagagaa gatacggtat ttacaaagtg cgccgttgta ctgtgcatcg     13140
     ctcccatcca tatggtcccg gctaacatac gcttttagag atcagttatt ctgcaatttg     13200
     attacttggg tattaagagt acccgaaaat tgaccgctct ctcggaccga gaaaagctta     13260
     tacattatgt tttagtttca actgtctacc tgtaaattac ttggagagtc gagcaaggag     13320
     ctatattaaa gcatatttta gcattccagg actttattct ccacagacgt agatatcgcc     13380
     tacgttattc cacaagtcct aagaagaagg gtaaacgaaa actgggttat atggcgaaga     13440
     caaaggcttt aaaggaggct attgcatatg tgcaagcccg gtttaaacag atagtgtgga     13500
     gaaatatagc tacgattacg tcttaaaaaa atatttgctt ttacactaaa cagcccgggg     13560
     gattggtctc gcgtcgttgt attgaccgat acacttaagg actagatcgg gaacgggaca     13620
     gccaatatta caaagtgcag cctgtactgt gtgtcactcc cagccattcc ttagagagca     13680
     gttcttgtgc tgtgttttgc tgggttaata acaccgaaaa ttgactggtg tgtccgtaaa     13740
     tctagcgcac tctgggacgt ttgcggtctt aaggggtagt tgattgcgat tgcatggtaa     13800
     tgcgtagaaa tattatgatc gatgtcgcgt tttcctgcgt tgtgtgctgt cgtttgagcc     13860
     ctaaggcgca ctactttcgt ctttaaacgt ttttgtttgt gtaatactat tccgagagag     13920
     aggatgatag tgcatacggc ctcgttgatg aatgttttgg cctctagagg gtctactaaa     13980
     tttcgctgtg tctactatta ttattagggt gggtcttcta tcatcgcctg tactttgaca     14040
     tagggcttcg aaatatgcga ggtttgttgg ctataaattt tctggtgtgt aggttagcat     14100
     cttcgtttgc ggtagacagc tactttaaaa aaataaattc gagttcggtt tagtggaatg     14160
     aaaaaagaag tcacaggaaa ggaacttgga gtaggaattt ttgtgggtaa agggctgatc     14220
     gatcttgttc tgaaaatctg tgttgcattg ggcaggtata gtactacctc ggttccgtgg     14280
     ttactgtatt gtcgaataag ggtgttgtta ggccaatact ttcgagaaaa aaagttttag     14340
     tgtagactgt cggaaatcgg aaaattattt cacacatttt ttattgtgat tctccgttgt     14400
     acaatagggt ttaaatgtct tctgggctgc tcgaatatcg atatttgacc tgttgtaaag     14460
     aatcgtttgc attgtaacag gacatagaga ttccttagat gggtatacgc aggaggtgga     14520
     attaaactac ccgaattctc ggaattgtcg gaaggcgtat aaaaccataa aagtggtggt     14580
     ttacgggaag accgaaaact tatgtgggag acagcgatgc gtcgatctaa ggaactgttg     14640
     gtatgtttcg gaaagaatta tgtgtattgt aacagggtac gagagggagt attaaatttc     14700
     agaacttgat aattttaagt gcgactggta tgatttgcac gagagagaga gagaggggtt     14760
     gtcgttagat ggggcttgta tgtgaaagca tgtttgcttt tgggaggggg gtcgacagtg     14820
     ccctctgttg tcaaaactca gctgggtcca gttccattaa ataaatgcaa tgcgcgctat     14880
     cctcgtcaaa gtggtgtgtg tgcagaggtc ttgcgtagaa ggttttgatt atttggatat     14940
     gtagctcaga tgtttttttt ttgagagagg atgcttaaaa aggtatgaat ttttttaaaa     15000
     acatttagca tatgcttatt ttatgtagcc tgtcgagaga acactgtgtt tgtgatcgcg     15060
     ctggagatct agctacgtta ctgttaagcg tttaaacgag gatcgttcgt accgtttccg     15120
     agagaaattg ttaaggaaat tgtgttacac gtctacagtg tttgacactc gggtttggga     15180
     tggtcgttac cgttacatta cgttcgtcgg ctgttgtgag catcgtctat acagttattt     15240
     tgcctaggct agcagacgga acattagtcc taaaatgcac gggtggagat cgttacaagg     15300
     agagtctttt gacccacaga acctctaagt acgcggctct tgttggggaa ttgtgtgttc     15360
     ggatggtttg taactatatt actttacatt tgttactcta tcgaagtgct ggatcatttt     15420
     acgacgtaat tggttgggtg ttacgtttgt ttatcggttg taacgactgg cattagcaga     15480
     agacgtggtg ttaatcagat acgagacacc taaccgctat gctatctcga atcacttctc     15540
     cattaacatc taagcagaag aacaagtcca tccaaggcat acaacgcaac taaacttgct     15600
     taaagcctgg ttcgatgtat taaactatat gtagcgacgt aatgtcctaa ttaaaacaca     15660
     tggtatcgca cttaataatt gggagcggtg gtcgctggcc tggcggctgg cagggtcaat     15720
     ttgtttacga aactctcgtg ttattccagg taattgtact gtccgaagta tgcaataata     15780
     attggctcct ttttttccca atgttggtgt acgtctataa gcaataactt tcgtaaaaaa     15840
     aaaaaaggaa gggcgcgggt tcgagtcccg gatcgggtcg cgcggggggc ggcaatcttt     15900
     aggactgtcg gtggggtgga ggtggggggc ggtagcgggg gcggggtctg tgctcacgca     15960
     agtgcttact tctggaggca gttgcccttg ttactgttaa aaaacatagg tagttacaat     16020
     taaattgata tgcaaattta atttaattaa ctggaggcgg aggtcgggca attgggcgtc     16080
     tgtcgggggc ggcgtgtcgg ccaggtgcgt ggctgggggc ggggggatgt ggcgtcagtc     16140
     tggcgggggt gtggacaggt ctggacctgt cggaggtgcc gcctgtctgg cggcggcgcc     16200
     gggggtggag ggggggtgtt gtttacttgc aagtgttaag tgcaccagtg ttaagtgcac     16260
     tttcatgtaa cctgtcaatc atccttaagt gcgctattgt tcgagtgtgg cggcatcctt     16320
     tgatctgcgg tccggcaatt ggccgagcgt gtggcgtcga tgacactatc gtcgacgggc     16380
     gattctcagt ggtccagtac cgccactgcc atactact                             16418
//
ID   Polinton-5_NVi repbase;    DNA;    INV; 18379 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   15-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-5_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-18379
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 795-795 (2009).
XX
RN   [2]
RP   1-18379
RA   Bao W. and Jurka J.;
RT   "Polinton-5_NVi.";
RL   Direct Submission to Repbase Update (11-MAY-2009)Polinton-5_NVi
RL   reach the 5'-end..
XX
DR   [2] (Consensus)
XX
CC   The consensus may be incomplete at 3'- ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           16719..17384
FT                 /product="Polinton-5_NVi_7p"
FT                 /translation="MEAMDAYLNHSFTFYQDFGNPSKILLPNHDVTFTNSF
FT                 GARAIGIDERPTPTSAPTAEMTTHNGQQFISSVGGGGGHDEETQQHPPAQP
FT                 ACKKQKKYESPPSVIMHQQTFAGLRQVKECIDLRFKQLEELSGLVNRGVDS
FT                 ILDYIKDALKREEAELCREILKNVNSFKQYYALHKYKIDEIVKTNLNFATV
FT                 SVDVLDVVLTEIYAFGLARIAKDVYDVMFPL*"
FT   CDS           8968..9630
FT                 /product="Polinton-5_NVi_3p"
FT                 /translation="MDTRWKHPFTACIAGPTGAGKSWFLKKFLEHLPEMCD
FT                 ARFDRVLLYYTEWQETYRSEFKVGGSAAVPIEFREGLPQRSDYSVDTGKKK
FT                 LLILDDLMRESSNDIVLDLFSRSSHHLNLSVFLVTQNIFHQGKSQRDISLN
FT                 SKYLVIFKNPRDRAQIRHLARQIYPEDPRFLQEAYIDATRGPHSYLFLDLT
FT                 QAAVDEYRVRTCIFPSDDIQYAYVPKFGKK*"
FT   CDS           join(14973..15671,15620..16072)
FT                 /product="Polinton-5_NVi_6p"
FT                 /translation="MTDYVIDIQGFRDINKKFIPKEVGVLSLQSRIVGHWI
FT                 IRAPCSFTELPADMQQTNNYCTLDVHGLEWHDGDISFKNLRRNLCNLVKDA
FT                 RRIYVRGQAKAKFLEKVVARRIINLEDFSAPSFDELSMQFPNVLLCTSHGI
FT                 KKFENKKNFCALRRAYQIRRWIHSIVASPHRSDPYDINSQVMYQAILDYDR
FT                 LQMERYHYPERFRASDVVDGIKKEADEKKDGAVEEEYVDAPSTREKRRCGR
FT                 RRVRRCTINMNTRQIITAIRGLKADSIGVYAANHVPKLLSTPTAIVTNLDT
FT                 SDQPGSHWVAIFIDKNGYGIYFDSYGVAPVSKHHLDRLGKNCTRFDWNKKQ
FT                 VQSVDSKVCGEHCIMFLYHMCSGISLRKYLRFFFIRLCQE*"
FT   CDS           join(2663..3055,3062..3586)
FT                 /product="Polinton-5_NVi_1p"
FT                 /translation="MRVIERASLPRVAEMSSATNEVRDAILRVANALKGRH
FT                 LPVQRKCTREWYVRVHRMCEERLRRELRCLLTHCAYRWIADFYQRYFKHSS
FT                 VVIKIVGSFLVERGARDVYCLRHIIEEHGKCLQCSLQSVFKKKYFIFVLLV
FT                 ARITLQEDAEESDSDATLFVVSSPPSPQRATSSEEEEEEEEQEEQEQEEQE
FT                 DIQAPMEEPMEDDAESEIEDSDHGDDRPGVSEQAVYRAGAPAPLRGSEQTM
FT                 EAAMILLSFRYEPAPEFGPTRAEVFEGFATRDETAEEVAMNPYARFDQYSS
FT                 FDRRINESKRNFF*"
FT   CDS           join(12405..12851,12823..13449,13453..14823)
FT                 /product="Polinton-5_NVi_5p"
FT                 /translation="MLQRKCACVDQHQTTFNEKICRIFGFEDSETRRKNGT
FT                 FVTSSMGSVVALGNRPASLSRAIPDQLYVYTDVCEPHTVGDTQAALLRIVS
FT                 VDSAKYKFGSNIVRHFAPAHYIPLLHHSFRSIVIDIRDQHGVRIPFEYGTL
FT                 TVTLHFKRNRRLRFTLNVIARERKKERERERERERERATLCHDESLHTLLR
FT                 RASRRWRSETRLFRFNVSARTRLGAWLGGLFRKILPYIASGARAVGKEAVR
FT                 TGINVLDDVANNGSNFKEAFKYRTKESGKKLKRKAGEKIAEMMKGSGYKSR
FT                 AMHRRRQLRKTRTSSTIGSSKKRKQHTAGRKKRVTRKTKKRPKKRSTQQQQ
FT                 QSLRSVTDIFGPRRIFGVKMAFLHSHSTECMSSELDLFTLPATQTSIESSS
FT                 FLHYKPVSSLSDDVDAPLEFVVPAGSEHYFDLAHTMLHVQAKIVPADEATA
FT                 TTEDLKVGPINNFMHSMFNQIDVFFNQKIVSPPNNAYPYRAYIETLLNYAP
FT                 AAKESHLTASLWYDDTSGGFDSPANAVSTATAPMIVNKGLENRKYFTQNRR
FT                 YFDMIGHLHHDLFNQDKMLINGVEMRVRLVRSKDAFCLMDATADGKFKLSI
FT                 KEATLIVRRVKISPGVLLAHAQALSKTTAKYPITRVEVKSFTLHSGILGDS
FT                 IDNVIHGQLPKRIILGFVENKAFNGNRALNPFNFQHFSINYISLYVDGVQI
FT                 PSKPLQPRFTGLDKLYIDAFQTLYTGTGVHFLNEGFGINRYNYYKGNFLTA
FT                 FDLTPDLSAHCATHWNLVRSGSIRIEVRFETALLTAINCIVYAEYDNVLEI
FT                 DSSRQIVTDFSA*"
FT   CDS           join(9683..10111,9957..10907,10832..12055)
FT                 /product="Polinton-5_NVi_4p"
FT                 /translation="MAPTTSKKKQAGCCIPVAALDTKHFNRKRVAVLNALC
FT                 HTDGQQRTALLRTADKRLVRCICECALNILQGVIKIKDSHKRRLKKHKNVL
FT                 RKLTICNNKKSVSDWQKKKRVLVQHGGAFLPLLLAPIIGALVSKLFNSKSA
FT                 AAEDRFAIIRNLSAIGRKRNEFSYSTVVLFCRFYSHLLSGLLSRSYLIQSQ
FT                 QQRKTKMDRARKMIIVPEDMFSRMQNVQPAAAAPPVVNESCENSVQTCGDN
FT                 LSRLDSEMHTILHSNKFTDEREKCQNYLQVLRRYLFFKDSERHAEHDYERD
FT                 VDEIEATSAPMTEEIILDSVPKSYAQKTRLLLKHWKTVAGDRLKWDSTGRV
FT                 SIDGRPIQDSNIIELISDVVARRKKTLDQSEVPIGRLPFAKFIKTVDTPIK
FT                 LIGNPEIVKIGKNLTEPNNTAKRRLPSKESIDALMEIHNASSSESPASPAL
FT                 TRNRAKNKWLRLANFQQRITGIACFDEKSSKEQVATSRKLLSMSSSSYEQQ
FT                 YDVSHEAGYAGARNLVRVNRKGKLFSAADTREKERIYEWLSNQDAYTLHRP
FT                 VKRKFPRLSYNVSNIDDVWECDLLQLTTIKEHNDGYCYLLVVVDVLSKHAW
FT                 LEPLRDKTTANVTAAFGRILERSNGRVPILLQSDKGKEFVGSTFQEFLKKR
FT                 DIKFRTARNPDIKAAVVERLNRTVRERMWRYFSHNNTQRYIDVVQKIIEAY
FT                 NHTQHSGTKMRPCDVSIYNAAKARENLAKRARLQSTYKNREKMASGVINKY
FT                 KPGSYVRISRTKNTFEKGYEKNFSEEVFKIKRISNRQQLPTFILEDLNGEE
FT                 IDGFFYLEELAHVGTKRMSDAAEQFKIERVIRTKGRGSKKQLLVKWAGYPD
FT                 KFNSWIKASEVQKI*"
FT   CDS           join(4859..5935,5835..6611,6404..7855,7734..8549)
FT                 /product="Polinton-5_NVi_2p"
FT                 /translation="MLSWVELAIRDIYEYLLTLIKSGSDRVGVSISSEYFA
FT                 NGSAGLSYRLASALTGDDLWSVVSGLVQSNANFRVDESFTVCLTVVEMPVG
FT                 AGGSRRKNLTVDSVSQRSIIQISNRDNLCLPRALVVGEAKIALQTNDTPAM
FT                 RAEWNVIRDGRRQLQHERAVKLCQDAGVLVPREGCGVQELRQFQHYFTARG
FT                 TALVAYEKDSMGSGEAPFFDGRCDACTTVIFLLYSELHYDVIVNIFGAAKA
FT                 KFFCTFCNRGYSNIEDHNCRQLCSRCFVSPPCSENEALQKCASCNRSFFGD
FT                 VCFRNHSVAGSYKAKHKRLCDVLQICLTCCKSVNRQRGKHECGKNWCRHCK
FT                 STHGYNQHCFIQPKKKTGSAVSTSAAKIGVDIASRHTVIINTVLYSRKKND
FT                 ASAKKYLYVFYDLETMQEASYRGDESIKMHVPNVCVAQQVCTECISSDDIS
FT                 EWCPSCGVREHIFTEDPVGQLLQLVVRDKTDFENIICIAHNARGYDAQFVL
FT                 RRLVERKINCAPSIILNGQKILCIRYGRTKFIDSLSYFQMKLAALPATFGL
FT                 GETTKKGCFPTFLTPRLTPNTVAPYRMRTIIRPTLCRRASASSSCCGTARC
FT                 VQRTQYSISARKSSTTVAWMDYEKRLFSHLFNTSANAEYRGAIPDAHYYSP
FT                 DTMSSSEREQFLLWHSEMRAANAVFDFSKEIVDYCRMDVTILRRACVAFRK
FT                 IFLEVGDTDPFVVATTIASACSHLYRKNFLKPQTIGIVPRGGYRRADKHSQ
FT                 KAVEWLLQCEREIGREIVHAGRAREYRLPEGFLVDGFLPSTNPAENPIVFE
FT                 YQGCYTHGCPECFKNNRNKPNAWGRTFDALLESTRAKIAQIQQLGYETREI
FT                 WECEFDRVKRENPEIAKYVSEHPLISKITLNPRDAFFGGRTENFVAVYDAK
FT                 PGERILYTDICSLYPYICKRGRFPLGHPKVYVGEESDELTGGNLNNFSAID
FT                 GLVKCKVLPPRKLYQPLLPIKMHGKLLFALCRTCCEEMRQSDCCHPDASQR
FT                 EFSGTWVADELRKAIELGYTITEIFVIWQYSMTEYDPLTGEGGLFAGYIDT
FT                 FLRLKQEASGFPAWCVDAESKARYVREYRENEGISLVLGQVRTARSRKHRG
FT                 FQLGALTRNRKRVTFASIAKMRGYRSFWGKFGQRDNLKQTVIVKEREDLLK
FT                 LLTAEDKEVLSLLLVNEEVMYASWQYIDDAVESTPYTNVVIAAYTTTLARL
FT                 KLFSYLEKLGKRTLYCDTDSCIFVCNENAQEYRPPLGSLLGDMTNELDEGT
FT                 YITSFLSGGPKFYGYRTVNSRTGEVSEKCKVKGISLNFSNSLRINYPSIKS
FT                 MIENYFKPDEENECINLKFNSIKRLPDHTVVTREEVKSCSIVLKKRRYVTP
FT                 GLSLPYGYKS*"
XX
SQ   Sequence 18379 BP; 5084 A; 4222 C; 4522 G; 4550 T; 1 other;
     agtagtatat gggctggtat ggagagactg ggcgtggcct agagtgacgt caccagtccc        60
     gtggctagcg ccagttgttt atgtaaacag aagcccatgt ttatatcaac agtagctgat       120
     aaggttaata aacatgattt acgaccgcta ctgtcataaa cagtctgtca tcgatgggtg       180
     acttttattt gtttatttat aaataattat aaataatttt taaacaaaag ctatattacg       240
     catacgatgc cagccctccc ccttttaccc caagcagacc cgagcgcgac tctctctctc       300
     tttcgctgtc tactccatac cggccccgag ctcgaacgca cgtgcgcgac tctcgctata       360
     ccagcccgta gcccccctct ccttttacac tatagtagcc cctgagctct ggcgcggtgg       420
     ctcccgccgc tgctgtaccg gacccgcttc tctctctctc tctctctctc tctctctctt       480
     ccctctctac gccatactcg cgcgcgtccg ccaaagccgc cgtctacctg tcgctcgcgt       540
     atacctgctg tttggctttt attgccctag cgccgactct gatcctttct gcgctgtaaa       600
     gagagagatt gttccacgta tataatttat atggtggccc tgaaaagggc cgattgtttt       660
     ttgaaatata tattattgta attagcgttt cagcttgctg tagccgtctt tttcggggca       720
     cgaaaaggtg tttgtggaaa aggatttttg attctgtgac gaggaggagg aggatttttt       780
     agacagatta ttataaccgc ttttctctgg atacgagaaa gtgttggttg agaatgacga       840
     ctgattgttc tgctttcttg gctccttgct tctcatgaga ggctgtctct cctcccacgt       900
     agaacctttt ttctgctctt tgctctgctc ctgtcccatg gtcgagttgc tgctttgccg       960
     gtcgcttgac gaatgattcg catcgaaatg aacgcgtgca tatataactc tactactcgg      1020
     tgccgcaaag cttactctaa atttcggctt tggggatcgt tgatgggagt gggggttttg      1080
     cacgcataaa aagagaaatt ctggcacaat atttatttac taaaaaacgc gtacgagtcg      1140
     aatgactcag cttacaaggt aatgaaataa taaaatgaca cacgagcgcg cgcacacaca      1200
     cacacacaca cacacacaaa catacttaca cagccacaca cacacacaca ctctaaattt      1260
     ctacgctata aattacaaac aagcgataca cctacacttg cgagtggcgc gttgttggcg      1320
     cagttgacgt gtgggccctc ctcgcagtaa accaggcacc aactctttcg gcggagtagg      1380
     catccgatga aagttgtaag gtacgctgcg gttgcggcgt gctgtcggtg gcgtaccttg      1440
     gacgttgttg tcgtcaccgt cgttgtcgtc gcctgctgat gatggtggag gcgaaggcga      1500
     tctcggcgaa tccatatcca ggatgcacgg gcagggctgt ccgttgcact tccagcagcg      1560
     aaagagaagg cacctccagc actgctgcca cacgtcgtgc tccgaactgt tggtgatgca      1620
     cactctgcac ctcacgttga tcggcacaaa ctgtaccgcc agagaagcct ttcgctcggc      1680
     ttcttgctgt ttttgctgca acagcgctga catgtccagc attctctgct ggtagcgctc      1740
     gagctggccg ttcagcttct ccattgcacg ttttttagct tcgatacttg cgagaagcgc      1800
     atcgcgttgg gctgctaatt ttttcaattc tgccatgatg gtggccacgt gtgtgctctc      1860
     tgtagggact cagagcggac tgatcggtgc aagccgtgtc ataaacgtaa gccgttggca      1920
     aaaatttctg cacgtaggta gagggggacc gcacctctcc actctttgcc ttttaacgac      1980
     gttcgttgtc ttaagaatgc gagaccgttg gtaacgctat actcggactg gattatttgt      2040
     atacacttga gctccagcgt cgtgggctta tcagaaaaaa tcggagacgg gtgagagcga      2100
     aagaaaggtt ctcaatgtct cgcgaatcag ctccaggaag tatcgtgtga tcatggactc      2160
     gggctttgtt ttattatcgc caacggatta gttttcaaaa ctaagcagag aacgaatcat      2220
     cggatctccg gtagacactt gagaataagt gtaaactgtt tgtacagaga ttacaggtgt      2280
     ccggtaagag agattaaaaa gggtcagccg tagagtcata aaaaactgtt cggtccgtgt      2340
     caccggatct agcggtggcg acggtccatt ctctgagacg tccgctatcc gcctaaggtt      2400
     tatgactgct acgtgcctaa agcgcaaaca gcgagtacgg tatcggattt atttctttcg      2460
     atcactggtg gcagcctgga tttctcagct atggctgtaa tatgcgctgt tttaaaacaa      2520
     atccccctct ttaacggttt ttctgctctg cgatcttctt attcgatgaa atcactccta      2580
     agaaaggcat gatattttca tatcagccct gagccgtcta caaaactcct ccgtacgcta      2640
     gcgcagtcat cagtctctcg aaatgcgtgt cattgagaga gccagcttac cacgtgtcgc      2700
     agaaatgtcc agtgctacga acgaagttcg cgatgcgatc ctgcgcgtag ccaacgcgct      2760
     caagggtcgt cacctacctg tgcagaggaa gtgtacccgc gagtggtacg tgcgcgttca      2820
     tcggatgtgc gaggagaggc tgcgacgcga gctgcgctgc ttgctgacgc attgcgcgta      2880
     ccgctggatc gccgattttt atcagagata ctttaaacat tctagtgttg tgataaaaat      2940
     cgtcggcagt ttcttggtgg aacgcggtgc acgcgatgtg tactgtctga ggcatatcat      3000
     cgaggaacat ggtaagtgtt tacagtgttc cctacaatca gtttttaaaa aaaaataata      3060
     gtactttatt tttgttcttc ttgtagctcg aattaccctg caggaggacg ctgaggagag      3120
     cgacagcgac gcaacgctgt ttgttgtgtc gtcacctcct tcaccacagc gagccacttc      3180
     atccgaggag gaggaggagg aggaggagca ggaggagcag gaacaggagg agcaggagga      3240
     tatacaagct cctatggagg agcccatgga ggatgatgct gagagcgaga tagaggacag      3300
     cgatcacggc gatgatcggc ctggcgtctc cgagcaggct gtctacagag cgggcgctcc      3360
     agcaccgctg agaggtagcg agcaaacgat ggaggctgcg atgattctgc tctcgttccg      3420
     ctacgagcca gctcccgagt ttggtcctac gagagccgag gttttcgagg gctttgcgac      3480
     tcgggatgag accgctgagg aagttgcgat gaatccgtat gcacgcttcg atcaatacag      3540
     ctcgttcgac cgtcgtatta atgaaagtaa gagaaatttt ttttaacttt taaattttct      3600
     taaaaaatta ttattactaa ctgttcgaaa attagtttaa tatacgaaca gagaacgaga      3660
     aggttcgaga agcttgttat cttattttaa aattcggcgg ttttcgctag accgcacggc      3720
     accagtgagg ttgccatggc gacgcgagct cgctcgctcc tactctatct ctctccgcct      3780
     gattcgcgac cggtcttctg ccgctttcgc cgatttgtgt tatttagtta tcgtattgcc      3840
     gaagcgctgt aaggactcgc ctcacagtga cgaccgttaa acagtatcgt ttgtttatgt      3900
     atcagtactt ttaacactat agccttcatt tcttttccgt agtttcaaca tttgtaaata      3960
     cactcgatct tacaataaat atcaaagcct tttcttacgg catagtaatt caagttaacg      4020
     atggagagtg tttttgttta ttgccagcta gcccttcgag atccacaagt ctgtaacatc      4080
     agttcgagag actataaata ctaacaataa taatttttta agttatcaga cgtcgtctga      4140
     acgaaggcat ggagccctgt ccggatgcag atccagaaaa tgacgcggct atgatttttc      4200
     aagctgctgc gctacgaatc gtgaataacg gtcgtgcgca ggaagtacgt tggttaaaca      4260
     acttgcttga aaaatcagca gacgagttat tttctatgac tgcgttcgag atggccgagt      4320
     tgttcagcga catcattcaa tgctacaacg gtcgtgcgga agaatgaagg ctcgcttctt      4380
     tgcagtcgac gacgataatg tcagcagcag cagcagcagc gaggaagagg gcccatcatc      4440
     gccggcaata tcatcggact cttcaacagt gctgagccct acattgtcga tgctgcagga      4500
     ggtcgggttc tacgatgcgg gtcacccgat catcgatgac agcacagcga gcggcatatc      4560
     gcaggtaggc ggcggcggtg acggcggcga tacctcgagc gaagagcgcc ggcggtgacg      4620
     gcggcgatac ctcgggcgaa gaggcaccgt cgccgaacaa tagtattgta agcggttctg      4680
     ctgcagcttc tgattcggat caggaggagg gaaggaggag gaggaggagg aagctcgtga      4740
     cgatgagcgt tatcgtcgct tcgaaattat cgcgaatacg gtgcatcgcg tacggaaatt      4800
     ccgtacagac gctcgccgtc tgacgctacg gattaaaaca ccgccgcgtg ggaccaacat      4860
     gctcagctgg gttgagttag caatacgtga catttacgag tatttgctaa ctctaatcaa      4920
     aagcgggagc gatcgcgtcg gtgtttcaat ctctagcgaa tatttcgcaa acgggtcggc      4980
     cgggctctcg tatcgtctcg cgagcgcgct gactggcgat gatttatggt ctgtggtgtc      5040
     tggactcgtt cagagcaacg caaattttcg agtcgacgag tcatttaccg tttgtttgac      5100
     cgtcgtagag atgcctgtag gtgcaggtgg ctctcgacgg aaaaacttga ccgtcgacag      5160
     cgtttctcaa cggtccatca ttcagatcag caatcgtgac aatctctgtc tgccgagagc      5220
     gctcgttgta ggcgaggcga aaatcgcgct tcagacgaac gataccccgg cgatgcgagc      5280
     cgagtggaac gtcatccgcg acggtcgtag gcaactacag catgagcgag ctgtaaaatt      5340
     gtgccaggat gccggtgttc tcgtacctcg cgaaggttgt ggtgtacaag agcttcgtca      5400
     attccagcat tattttactg ctcgtggtac agctttagtt gcttacgaga aagactcgat      5460
     gggcagcggt gaagcaccat tttttgacgg acgctgcgat gcctgcacaa ccgtaatatt      5520
     tttgctctac tccgagcttc attacgacgt gatcgtcaat atttttggag ctgcgaaggc      5580
     aaaatttttc tgtacttttt gcaatcgcgg ctacagtaat atcgaggatc acaactgtag      5640
     gcagctgtgt tcgcgctgct tcgtctcgcc accctgtagc gagaacgaag ctttgcaaaa      5700
     atgcgcatcg tgcaatcgca gttttttcgg cgatgtatgt tttcgcaacc attcggttgc      5760
     gggatcatac aaagcgaagc acaagcgatt gtgcgatgtg ctgcagattt gtcttacctg      5820
     ctgcaaaagc gtgaaccggc agcgcggtaa gcacgagtgc ggcaaaaatt ggtgtcgaca      5880
     ttgcaagtcg acacacggtt ataatcaaca ctgttttata cagccgaaaa aaaaatgatg      5940
     cttcagcgaa aaaatatctt tatgttttct acgatctgga aacgatgcaa gaagcatcgt      6000
     atcgaggcga tgaaagcata aagatgcacg tcccgaatgt ctgcgttgca cagcaagtct      6060
     gcacggagtg cataagttct gacgacattt cagaatggtg tccctcgtgc ggtgtgcgcg      6120
     agcatatatt taccgaagat cccgttggtc agctgctaca gcttgtagta cgcgacaaaa      6180
     cggactttga aaatataata tgcatcgcgc acaacgcacg agggtacgat gcgcaattcg      6240
     ttttacgacg gcttgtcgaa cgtaaaataa attgcgcgcc aagcatcata ctgaatggtc      6300
     agaaaatact gtgcatccgg tatggacgca caaagttcat cgatagtctc agctattttc      6360
     aaatgaagtt ggccgcgttg cctgctacat ttggtttagg tgagactacg aaaaaaggct      6420
     gttttcccac ctttttaaca cctcggctaa cgccgaatac cgtggcgcca taccggatgc      6480
     gcactattat tcgcccgaca ctatgtcgtc gagcgagcgc gagcagttct tgctgtggca      6540
     cagcgagatg cgtgcagcga acgcagtatt cgatttcagc aaggaaatcg tcgactactg      6600
     tcgcatggat gtgacgattc tgcgtcgcgc gtgtgtggct ttcagaaaaa tttttctcga      6660
     ggtcggagac acggacccgt ttgtagtggc tactacaatc gcgtccgcgt gctctcatct      6720
     ctatagaaaa aatttcttaa agccacagac tataggaata gtccccaggg gcgggtatag      6780
     gcgcgccgac aagcactccc aaaaagccgt cgagtggctg ctgcagtgcg agcgagagat      6840
     cggtcgcgaa atcgtgcatg caggcagagc gcgcgaatat cggcttcccg agggattttt      6900
     ggtcgacgga ttcttaccat ctaccaatcc agcagaaaat cccattgttt ttgaatacca      6960
     gggctgctat acgcatggct gccctgaatg tttcaaaaac aatcgcaaca agccgaatgc      7020
     ctggggtcgt actttcgacg cgttgctcga gagtacacgc gctaaaatcg cgcagatcca      7080
     acagctcggt tacgagacgc gcgaaatttg ggagtgcgag tttgacagag tcaagcgtga      7140
     aaaccccgaa atcgccaagt acgtgtcgga gcatccgctc atcagcaaaa taacgcttaa      7200
     tcctcgtgac gcgttcttcg gcggacggac cgaaaatttc gtcgcagttt acgatgctaa      7260
     gccaggcgag cgtattctgt atacagatat atgctcgctg tatccttaca tttgtaaacg      7320
     aggcagattt ccgctcggtc atccaaaggt ttacgtcggc gaggaatctg atgagctgac      7380
     gggtggcaat ctcaacaatt tttcggccat agatgggctg gtaaaatgta aggttttacc      7440
     gccgagaaaa ttgtatcagc ctcttttgcc gataaaaatg cacggcaagc ttctcttcgc      7500
     actgtgtcgt acatgctgcg aagagatgcg gcagagcgat tgttgccacc cggatgcgag      7560
     tcagcgagag ttcagcggaa cctgggtggc ggatgagctg cgaaaagcca tcgaactcgg      7620
     ctatactata actgaaatat tcgtcatatg gcagtatagt atgaccgagt acgatccgct      7680
     cacaggtgaa ggaggacttt tcgctggcta catcgacact ttcttgcgat taaagcagga      7740
     agcatcgggg tttccagctt ggtgcgttga cgcggaatcg aaagcgcgtt acgttcgcga      7800
     gtatcgcgaa aatgagggga tatcgctcgt tctggggcaa gttcggacag cgcgataatt      7860
     taaaacagac ggtgatcgtc aaggagcgcg aagacctcct taaacttcta acggccgagg      7920
     ataaagaggt cttgagtctc ctgctggtca acgaggaggt gatgtacgcg agctggcagt      7980
     acatcgacga tgctgtggag tctactccat atacgaacgt agttatagca gcctacacga      8040
     caactctggc ccgcttgaaa ctattttcgt atttggagaa gctcggcaag cgaacgctgt      8100
     actgcgacac tgattcgtgc atatttgtgt gcaacgaaaa cgcacaagaa tacaggcccc      8160
     cgttaggctc gttgctcggc gatatgacca acgagctcga cgaagggact tatattacga      8220
     gcttcctctc gggtggtccg aaattttacg gctacagaac cgtgaattcg agaactggcg      8280
     aggtatccga aaaatgtaaa gtcaagggta tctcgctaaa tttctcgaat tctttgagaa      8340
     taaattatcc tagcattaag agtatgattg aaaattattt taagcctgat gaagagaatg      8400
     aatgcattaa tcttaagttt aattctatta aaagattgcc agatcacact gtcgtcacgc      8460
     gagaagaggt caaatcgtgt agcatagttc taaaaaagcg taggtatgtt actcccgggt      8520
     tatcgctccc gtacggttac aaaagttaag tatagtatgt aagttgtttg tgaataaata      8580
     aaagtaaatt taagaatctc gtttttgtat tagtttttaa gtaatataaa ttgttctgcg      8640
     ttatgtttaa tatatttata ataaaaaaaa agtattttaa aatttttctt gtaattataa      8700
     catccttctc tctcctttac ccactcatca tcgcacgctt ataggcgagc cgtacatgca      8760
     cgcgtataga cggctcgtcc gcggatgata ctcgtggccg ctaatatacg cttataagcg      8820
     gcccgcgtga gtatacgcgt atacgcggcc cgcgtgagta tacgcgtata cgaggcccgc      8880
     gagagtacac gcgtatacgc ggcccgcggt agaggaataa tattaataaa aagcgctttt      8940
     cgggaagaga gcgctttagt cgaaaagatg gatacgcgtt ggaagcatcc ttttacggcg      9000
     tgcatagcag gaccgacagg agctggaaaa agctggtttc tgaaaaaatt tctcgagcat      9060
     ctgccggaga tgtgcgatgc tcgcttcgac agggttctgc tctactatac cgagtggcaa      9120
     gagacgtacc gcagtgaatt caaagttggc gggagtgctg ctgtacctat cgagtttcga      9180
     gagggacttc cgcagcgaag cgattactcc gtggatacgg gaaagaaaaa attactgatt      9240
     ctcgacgact tgatgcgaga atcatcgaac gatatagttc tggatttgtt ctcgcgttcg      9300
     tctcatcatt tgaatttgtc ggtctttctg gtgacgcaga atatttttca ccagggaaag      9360
     tctcagcgcg acataagttt aaattcaaag tatcttgtta tatttaaaaa tcctcgcgac      9420
     agagctcaga ttcggcatct cgcgcgacaa atttatccgg aagatccgag gtttctgcag      9480
     gaggcttaca tagacgctac gcgcggacct cactcgtatc tttttctcga tctaactcaa      9540
     gcggccgtgg acgagtatag ggttcgcacg tgtatattcc caagcgacga tattcagtac      9600
     gcctacgtgc cgaaattcgg taaaaagtaa aaatacaaaa taggtgtgca gagctctcgg      9660
     catagacagt aggcgagaag ctatggcgcc aacaacatcg aagaagaaac aggctggctg      9720
     ttgtataccc gtggctgcgc tcgacaccaa gcatttcaac agaaaacgag tagctgtact      9780
     gaacgctctt tgtcacacgg acggccaaca acgtacggct cttttacgca cagccgacaa      9840
     gagactcgtg cgttgcatat gcgagtgcgc tttgaatatc ttgcaaggtg tgatcaaaat      9900
     caaagactcg cataaacgac gactcaaaaa gcacaaaaac gtgctgagaa aattgacgat      9960
     ttgcaataat aagaaatctg tcagcgattg gcagaaaaag aaacgagttc tcgtacagca     10020
     cggtggtgct tttttgccgc ttctactcgc acctattatc ggggctcttg tctcgaagtt     10080
     atttaattca aagtcagcag cagcggaaga ctaaaatgga tcgtgcgaga aaaatgatta     10140
     tcgtgcccga agatatgttt tcgcgcatgc aaaacgttca gccagcagca gcagcaccgc     10200
     cagtagtaaa cgagtcgtgt gaaaactctg ttcaaacgtg cggcgacaat ctctcgagac     10260
     tcgattccga gatgcacaca attctacatt cgaataaatt tacagatgag cgtgaaaaat     10320
     gtcaaaacta tttacaagta ctgcggcgat atctgttttt caaagattcc gaacgtcacg     10380
     ctgaacacga ttacgagcgc gacgtcgacg aaatagaggc cacatcggca ccaatgactg     10440
     aagaaattat actcgacagc gtgcccaaga gttacgctca aaaaacgcgc cttctgctga     10500
     aacactggaa aaccgttgcc ggcgatcgtc tcaagtggga tagcactggc agagtcagta     10560
     tagacggccg gcccatacaa gattccaaca ttatagaact gattagcgac gttgtcgcac     10620
     gcaggaaaaa aacactggat cagtcggaag tgcccatcgg ccgtttacct ttcgccaaat     10680
     tcatcaagac agtcgacaca ccgataaagc tgattggaaa cccggaaata gtgaaaattg     10740
     gtaaaaattt gacagagccg aataatacag cgaaacgacg actgcctagt aaagagagca     10800
     tcgacgcgtt gatggaaata cacaacgcta gcagcagcga atcaccggca tcgcctgctt     10860
     tgacgagaaa tcgagcaaag aacaagtggc tacgtctcgc aaacttttaa gcatgtcgtc     10920
     gtcgtcgtac gagcagcaat acgatgtctc gcacgaggct ggttacgcgg gtgcgcgcaa     10980
     tctcgtgcgt gtaaatcgaa aaggcaaatt atttagcgcg gctgacacgc gggagaaaga     11040
     acgtatatac gagtggctta gtaatcaaga cgcctatact cttcacagac ccgttaagcg     11100
     taaatttccg cgattaagtt acaacgtgag caacattgac gacgtatggg agtgcgattt     11160
     gcttcaatta accacgatca aagagcacaa cgacggatac tgttacctac tcgtagtggt     11220
     ggatgtattg agtaaacacg cgtggctgga gcctctacgc gataaaacta cagccaacgt     11280
     caccgcagcc ttcggacgaa tactcgaacg cagcaacggt cgcgtcccga tactcttaca     11340
     atccgacaag ggtaaggagt ttgtaggctc gacgtttcag gaatttttga aaaaacgcga     11400
     catcaaattc cgtacagctc gaaaccccga tatcaaagcg gctgtggtgg aaagactaaa     11460
     ccgtactgta cgcgaacgaa tgtggcgata cttttctcac aataacacgc aacgttacat     11520
     cgacgtggtg cagaaaatca tcgaggctta caatcatacg caacacagcg gtacaaagat     11580
     gcgcccctgt gacgtgagca tctacaatgc tgcgaaagcg cgcgaaaatt tagcgaaaag     11640
     agctcgtctg caatcgactt acaagaatcg cgaaaagatg gcgtcaggtg taatcaataa     11700
     atacaagccc ggatcttacg tacgcattag tcgcacgaaa aatactttcg agaagggata     11760
     cgaaaaaaac tttagcgagg aagttttcaa gattaagcgc atatccaaca gacagcagtt     11820
     accaacgttt atcctggaag atttgaacgg cgaagagatt gacggctttt tctatctcga     11880
     ggagctcgct cacgttggca caaaacgcat gtcggacgct gctgagcaat tcaaaataga     11940
     acgcgtaatt cgtacaaagg gtcgtggctc gaagaagcag ctactcgtca agtgggctgg     12000
     ctatccggac aaattcaact cgtggatcaa agcctctgaa gtacaaaaaa tttaaaaatg     12060
     gaccagaacg atttttacct agttctgcct agcaacagca gtatgatgta ctacaacgaa     12120
     aacgccacca gctgctttac aacgcagctc tcgcgcgagc tcagactcag cgggaattgg     12180
     tccgttgcgc tcgtcgaaat tcacgtgccg agcactgtca cgcacattca agaatcggac     12240
     gccttttaca cgtttaaaca gtcggaaaac gcaaagcagg aaacgcattt tttccgcacg     12300
     gtatttacga caagatcgag caactagcca acgaaataaa taaatcagcc gcctttcacg     12360
     atcatctgcg tctcgaagtt gcaccctttc aaaagggcta ctacatgcta cagcgcaagt     12420
     gtgcctgcgt tgatcagcat cagacaacgt ttaacgaaaa aatttgccgt attttcggtt     12480
     tcgaagattc cgagactcgg cgaaaaaacg gcacctttgt cacatcgtca atgggcagtg     12540
     tagtcgcgct aggaaacaga ccagcatcgc tttcccgagc tattcccgat cagctctacg     12600
     tgtacacgga tgtatgcgag ccacacactg taggcgacac tcaagctgct ctactgcgta     12660
     tagtttccgt ggatagtgca aagtacaaat tcggcagtaa tatcgtgaga cattttgcac     12720
     ctgctcatta tattccactt ttacatcaca gttttcgctc gattgtcata gatataaggg     12780
     atcagcacgg agtgcgaata ccattcgaat atggaacgct gacggttacg cttcacttta     12840
     aacgtaatcg ctagagagag aaagaaagag agagagagag agagagagag agagagagag     12900
     agagcaacgc tatgtcacga tgagtcacta catacgctac tacgacgagc aagtaggagg     12960
     tggaggagtg agacacgtct attccggttc aacgtatcag cgcggacgag gttaggtgcg     13020
     tggctcggag gtttatttcg caaaattctt ccgtacatcg cttccggtgc cagagctgtg     13080
     ggcaaagagg ctgtgcgcac aggcatcaac gtgttggacg acgttgcaaa caacggctcg     13140
     aatttcaagg aggcgttcaa atatcgtact aaagagtctg gaaaaaaatt gaagagaaaa     13200
     gccggtgaaa agatagcaga aatgatgaaa ggctctggtt ataaatcacg cgcaatgcat     13260
     cgaaggcgtc agttgagaaa gacacgtaca tcgagtacaa tcggctctag caaaaaacgc     13320
     aaacaacata cggcaggacg gaagaagaga gtcacgagaa aaacgaagaa gaggcctaaa     13380
     aagagaagta ctcagcagca gcagcagagt ttgagaagtg ttacggatat ttttggtcct     13440
     aggcgtattt agtttggggt aaaaatggca tttttacatt ctcactcgac ggaatgcatg     13500
     tccagcgagc tggatctttt cacgcttcca gccacccaaa cgtccattga aagcagcagc     13560
     tttctgcatt ataagcctgt gtcgtctctt agcgacgatg tcgacgcacc attggaattt     13620
     gtcgtgccgg caggtagcga gcattacttt gatctggctc acactatgct tcatgttcaa     13680
     gctaaaatcg tacccgctga cgaggctacc gcaacgaccg aagaccttaa agtcggaccg     13740
     atcaacaatt tcatgcattc aatgttcaat cagattgacg tttttttcaa tcagaaaatt     13800
     gtttcgccgc ctaataacgc ctatccttac agagcgtaca tcgagacgct tctcaactac     13860
     gctccggctg ctaaagagtc acatcttaca gcgagtctgt ggtacgacga cacgagcggc     13920
     ggtttcgatt cgccagctaa tgcggtgagc actgccacag cacctatgat cgtgaacaaa     13980
     gggctggaaa atcgcaaata ttttacacag aatcgacgat actttgacat gattggacat     14040
     ctacatcacg acctctttaa tcaggataaa atgctgatta atggcgtaga aatgcgcgta     14100
     cgtctagtga ggagtaagga tgctttttgt ctgatggacg cgacagccga tggaaaattc     14160
     aaactcagca tcaaagaagc tacactcata gttcgcagag taaaaatcag tcctggagtt     14220
     ttactggctc atgcgcaagc gttatcgaaa accacggcta aatatcccat aacgagagtc     14280
     gaagttaagt cgtttactct tcactcggga atattgggcg attcgatcga caacgttata     14340
     cacggtcagc tgccgaagag aataatcttg ggctttgtgg aaaacaaagc attcaacgga     14400
     aaccgcgcgt taaacccttt taattttcaa cacttctcta taaattatat ttctctctac     14460
     gtcgacggcg tacaaattcc aagcaaacct ttgcagccac gtttcacggg tctcgacaaa     14520
     ctctacattg acgcttttca aacactttac acgggcacag gcgtgcattt tctcaacgaa     14580
     ggttttggca tcaatcgcta caactattac aaaggcaatt ttttgacggc cttcgatctc     14640
     actcctgatt tatcggcaca ctgtgccaca cattggaatc tcgtgcgctc gggtagcata     14700
     cgcatagaag tgagatttga gacggctctt ctcactgcta tcaactgtat cgtttacgca     14760
     gagtacgaca acgttctgga aatcgactct agccgccaaa tcgtaacgga ttttagcgct     14820
     tgatgcgcac gcacactcga tcgcagcgcc tcaaaaaaaw ttttttttga ttcgcgcttc     14880
     ataaggcgag cgcgctgaca gtctgcagtt agtctccctc tcgaaacagc cagcacctaa     14940
     cgtactcgag cagcaacagc atcatcgtca tcatgacgga ctacgtgatc gatattcaag     15000
     gctttcggga tataaataaa aaatttattc ccaaagaagt cggagtttta tctctccaga     15060
     gccgtatagt tggtcattgg atcattcgcg cgccgtgcag ttttaccgaa ttacccgcgg     15120
     atatgcagca gacgaataat tactgcactc tcgatgtaca cggtctagag tggcacgacg     15180
     gagatatctc cttcaagaat ctgcgtcgta atctgtgcaa cttggtgaaa gacgcgcgcc     15240
     gtatatacgt gcgtggccag gcaaaagcca agtttttgga aaaagtagtg gctcgaagaa     15300
     tcatcaattt agaagatttt agtgcgcctt cgtttgacga actctctatg caattcccta     15360
     acgtcttgct gtgcaccagc cacggtatca agaaattcga gaacaagaaa aatttttgcg     15420
     cactgcgtcg agcctatcaa atcagaaggt ggatacactc aatcgttgcc agtcctcatc     15480
     gaagcgaccc gtacgacata aatagccaag taatgtacca agctatatta gattacgatc     15540
     ggctgcagat ggagagatat cactatcccg aaagatttcg tgctagcgac gttgtggacg     15600
     gaattaaaaa agaagctgac gagaaaaaag acggtgcggt agaagaagag tacgtagatg     15660
     caccatcaac atgaatacgc gtcaaataat cacagctatt agaggattaa aagccgattc     15720
     aataggagtt tacgctgcta atcacgttcc gaaattgcta tccacaccga cagctattgt     15780
     aacgaatctc gacacgtccg atcagccagg atcacactgg gttgccatct tcatagataa     15840
     aaatggatac ggaatttact ttgacagcta cggagttgca cccgtatcaa agcatcatct     15900
     tgatcgactc ggaaaaaact gcacgcgatt cgactggaat aaaaaacaag tgcagagcgt     15960
     cgactctaaa gtatgtggcg agcactgcat tatgtttctg tatcatatgt gtagtggcat     16020
     ttctctgcga aaatatctac gttttttttt catcagactt tgtcaagaat gacgcattag     16080
     ccgttaagtt ttatcgaagg ctcatgagaa gaatgcaaaa taaaacaatg cgtcatcgcc     16140
     atcatcgagt caacgcattc ccacgcacga gttctacagg acggggttac tgtaatcaga     16200
     tctgcacagc caagaccgga tgtttgttat ctgagcagtt tatacaaacg tactaggtgt     16260
     gacggttgcg ttaaacaaaa caacttctat cgatatcaaa cgtgtctcgt ttcactatgg     16320
     aatgtaaata ctgtaacggc cgtttctaga aagaactgcg actcgttgac gctcgctctt     16380
     tgtcgtccca ttctttataa aggtgtcgtg gcgcagtcgc cagccatcag tcgtaagaac     16440
     actctcgtca agtagacctc gtgtgtaaaa aatctttgca atggattcag cagcagcagc     16500
     agcaccaagt gccgagtctt ggaaaaataa gccgatcacc tgcaacttgt tgtactcgac     16560
     gacgtacgcg ctcaacaaat caaactgcaa gcgtgcaacc ataggcctgg agtattacgg     16620
     cggttactac agagcagtgt taaaaatttg tgccaatgga tcgccagcca agtatgtgac     16680
     actcgacaca cacagcgtgg gaagtgatca aagatcagat ggaggctatg gatgcatatc     16740
     tgaatcactc cttcacgttc taccaggatt ttggaaatcc tagcaagatc ctccttccaa     16800
     atcacgatgt cacattcaca aacagcttcg gagcaagggc gatcggcatc gacgagaggc     16860
     caacaccaac atcagcacct acagcagaaa tgacaaccca caacggtcag cagttcatca     16920
     gcagtgtcgg cggcggcggc ggccatgacg aggaaacaca acagcatcca cctgcacagc     16980
     ctgcgtgcaa gaagcagaaa aagtacgaga gtccgcctag tgtaattatg catcaacaaa     17040
     cgttcgctgg cttaagacag gtaaaagagt gcatcgattt gcgttttaaa cagctcgagg     17100
     agctttcggg attagttaat cgcggcgtgg actcaatttt agattatata aaagacgctt     17160
     tgaaaagaga agaggctgaa ctatgtcgtg aaattctgaa aaatgtaaac tcgttcaaac     17220
     aatattacgc ccttcataaa tataaaatcg acgaaattgt taagacaaac ttaaatttcg     17280
     ccactgtaag cgtcgacgtt ttagatgtag ttttaacaga aatctatgcg tttggcttag     17340
     ccagaatcgc aaaagatgtg tacgacgtta tgtttccgct ataacttttt ttattcatct     17400
     cctatcgtta gtttctaagc tgtaaatatg ctttattgtt ctacgcacac acacacacac     17460
     acacgcgcgc ataaatatat catgtattca atttttactg ttttattaaa taaatataag     17520
     agtgtatcaa acaaaaattt ctctatttta atgtgtacaa atcccatcaa taaaccccaa     17580
     agctgaaatt tagagtaggc tttgcggcac cgtgtagtag gaaatcatac aggttacata     17640
     ttattacagc gcagaaagga tcagagccgg cgctagggca ataaaagcca aacagcaggt     17700
     atacgcgagc gacaggtaga cggcggcttt ggcggacgcg cgcgagtatg gcgtagagag     17760
     gggagagaga gagagaagcg ggtccggtac agcagcggcg ggagccaccg cgccagagct     17820
     caggggctac tatagtgtaa aaggagaggg gggctacggg ctggtatagc gagagtcgcg     17880
     cacgtgcgtt cgagctcggg gccggtatgg agtagaaagc gagagagaga gagagagaga     17940
     gagagagaga gagacaccgc gtcagagctc ggggctacta tagtgtaaaa ggagaggggg     18000
     gctacgggct ggtatagcga gagtcgcgca cgtgcgttcg agctcggggc tggtatggag     18060
     tagacagcga aagagagaga gagagtcgcg ctcgggtctg cttggggtaa aaggaggagg     18120
     gctggcatcg tatgcgtgat atagcttttg tttaaaaatt atttataatt atttataaat     18180
     aaacaaataa aagtcaccca tcgatgacag actttttgtt tatgacagta gcggtcgtaa     18240
     atcatgttta ttaaccttat cagctactgt tgatataaac atgggcttct gtttacataa     18300
     acaactggcg ccagccacgg gactggtgac gtcactctag gccacgccca gtctctccat     18360
     accagcccat atactactc                                                  18379
//
ID   Polinton-5_PBa repbase;    DNA;    INV; 19981 BP.
XX
AC   .
XX
DT   21-MAY-2012 (Rel. 19.03, Created)
DT   21-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Polinton-type DNA transposon, consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-5_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-19981
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the Pogonomyrmex barbatus genome.";
RL   Repbase Reports 14(3), 646-646 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 19981 BP; 5290 A; 4844 C; 4785 G; 5059 T; 3 other;
     agtaggataa caaagggggt ccgatgtccc ccaggggtat gggggggggc gaggggagag        60
     agggggatcg tagaatcccc aggggmcatc ggaccccctt tgagtcggta agatgatttt       120
     ctttcctcag agggttcgta tccggggaga gaaggtggat ccctctggcg gtcgtcgaga       180
     caggtttatc cctctcggtc ggtaaggcgg tcgcggggtt tccccgggtc ggttcccccg       240
     ttctcgacgc cgccctagcg tttttttcta gcgttttttt ctagcgtttt tttcgggcgc       300
     gttctcgacg ccgccctagc gttttttttc gggcgcgtcc tagcgtttcc cgctaggtaa       360
     ccccgggcgc gtcatcgacg ccgccctagt gtgttttttt cgggctcgcg tagccttggg       420
     cgcgttacgc cgccctagcg ttttccgcgc ggtctagcgc ttttcgcgta gccttgggcg       480
     cgttctcgac gccgccctag cgttttccgc gcggtctagc gcttttcgcg tagccttggg       540
     cgcgaacgtc gcgattaggc gcgtcgtcga ggcgactcgc gttgtttaca ggatgttgcg       600
     gtttgtcgcg tcgccttagt cgtgtctgtt ttccataacg tcgcgattag gcgcgtctcg       660
     cacgtcgcga ttaggcgcgt ctcgcgtccg agcgttttcc gcggggctta gcgcgtcctg       720
     tttgtggttt gacgtgtttt ttacgtcact ttagagagta tttaactagg agtgtcgacg       780
     atatattgtt agtagtttgc gagatggaga gtcagtctaa tgtttcggag agtcagttta       840
     atgttttgga gagtcaattg aaggatccgg agataatatc gctcttagaa gattcgctcg       900
     agctctcgag agagatggaa cgcgagatag tggaacggga gaaacacgcg atgacgatgg       960
     ggcgtgagaa acggcctacg atcgagcggg aagaggagaa cgagatatcg gcggaggtcg      1020
     agagcgatgc ggtcgactcg ctcgagttga tgcgcgcgat gtggacgtct atgcattcga      1080
     cgtcgtgtaa tttgcggcta atgatggcgt ttttgtctaa acatctggcg attcatcgag      1140
     gaacggagcc gatcgcgcgt atacgcgagg ctgagcgtat gaggaacgct atacgtatcg      1200
     ttactgatgt ctggagtcga aagggtccgt ggaactcgta ctgttctggg gacagtatgg      1260
     ttcgcttggt cgagagttcc gcgacgccgg acgagcgtgc gtcgcttatg gagatcgaga      1320
     taacgaagga ggcttcttcg aattggataa gagattactg ggaatatctg gcgcgtttga      1380
     aaacgacgaa aggggatctc gacgacgagt acgagaaata tcttgcgcgt ttgaatacta      1440
     cgagagggaa tgatgagagt tgtggcagtg gtttagacgc attgttcgcg tctctatctg      1500
     gagataagga ggaggctgat cgattcgttc agtatgtgac gaagttgaag ggtggacgac      1560
     agctcgaggc gagatctccg ggcgagaaag ggatcgattg cgaattggtt cgaatgtacg      1620
     tgtacaatgt caaggatata gttaagaaga agagacgcaa ctggtggaag tatgcgaaat      1680
     tgagagttca atttttgaac tccgtgtcgg atcggaagaa gcagttgatg cgacagttga      1740
     tagatcgagt cgccgatgat ctgaggaaag tacccggagt gcgcggggaa gcgagaagcg      1800
     tcgagtgcga cagcgagtag gaatgtatcg ctatgacgtt cgcgcgaatt atcgtcaggg      1860
     ggtattgatt gtggcgaaga gcgcgagtat atgtaaaaga aaaatgtact aatatttcta      1920
     tgtaaaagaa tatattaata tgtatactaa ttgaatatat gtataagaat atacacgaat      1980
     atatgtatac taattattaa tcgaatatat gtataagaat atacacgacg aatatatgta      2040
     taagaatatg tacacgaata tatgtgtaaa agtgtgcgca aatatgatgt cgaagttttt      2100
     ttctcgttcc gagaacgtat gagagagacg agagtgggag tcgcgcgaga agaaaattat      2160
     cgtaggagta ttaataagaa gataatattt cattgggaat gtgaatgttg tgcgatgcgt      2220
     catttttcgc gctcgctacg cgtgactacg ggaagtctga ccgcaacggc gatagaagat      2280
     tagtcagtct attgtttatt tcttcgttct ttattctatt gctattttat cgttgtcatg      2340
     cttttatttt tgttctctat tgtgtacttt tgttctctat tttgtattgt taatgatatt      2400
     gcgtatggga tctttagcga gatcgtcatt cgttggtgtg taatcgcgct acttatattt      2460
     ggattcgttc gacgagaata atctcacgcg atagagaata gaaattaaag cgattttaat      2520
     ttctgattcg cgactcggat cgattcatcg cgtcggtcct cgccctctcg cgaccgatgg      2580
     caacatcgat cgaacggttc gcgcgtattt cggtcggcga cgcgcagtgt cgatttgact      2640
     tctgtctcgc gcgatgacgc ccgctcgtgg aatcgccgtg atcgcgtgcg cgatagccgt      2700
     tatcgcggcg attcgcgact ccgtcgccga cagcgacgag gaggcgattc ggtttttgca      2760
     aacctacgga tatctggatg gcgataacgt gcaaacgata tcagataacg cgacgttggc      2820
     tctgagacac gcgattgcgc tttttcagga gtattatcgt atacctggtg atggtgttct      2880
     taacgaagct acattggaac agatgcgtaa accgcgatgc ggcgtcaaag atatattaaa      2940
     tgacttggac gattctccga ggaaatgggc gaagacgcat ctcacttgga actttcatct      3000
     ggcgagcgag agcgttctac gagtcaccga agtcgcgttc gagatgtggg ctgcgaattc      3060
     gtcgctgacg ttcgagcgca attcgacgaa tcccgatatc gtgatatcgt ttcggaaagg      3120
     ttttcacacg tttgtagatc ctcggcatca aggtagccga atatgtccgt cgttgctgga      3180
     cggaccagga aacgtgttag ctcacgcttt tttaccatcg tcagaagtgt cagaggtgca      3240
     cgtggatagc gcggagaagt ggcacatcga gttaactgtt aatcctgacg atacgattca      3300
     tctgttgcat acgttgacgc acgagatcgg tcacgcatta ggattacatc acagtccttt      3360
     aaaagatgcg ataatgtacg cttttgttcc ctctaagacc tttcccgtgc gattgagcga      3420
     ggcggatttt ctcgccattc agaatttata cggtttaaga aataagagcg aaattgcggg      3480
     accagttacg acgaccgtag cgacgaccac gattgcgacg cgcgatacgg ggaattccgc      3540
     ggatctgtgc gcgttgcgac gcgtcgatgc ggtgttggta ttagaaaata gaatgtatgt      3600
     ggcgtatcga cattacttat ggtcggtcga tctaaacgga aaatcttacg gcaggtcgtt      3660
     gttactgacg gactatctgc gttttcttcc cgataatttt acgcgtttgg cgggtgcgta      3720
     tcgacgacct tcgggccaac tcgtattgtt tgttgacgat acggtttata tgatagaata      3780
     tccgagtttt gagctagtac cgggttggcc gaggaaattg aaagatatga atcttcctcc      3840
     taatgcgaaa attaacgctg tgattaatac taacgcggga cgaacgttcg cgatctacaa      3900
     cgacgagatc gtggccgaga tcgacgattg ctcgatgata gccgtcaggc ataattcgtt      3960
     gcacgcgata tttcctggga ttccacccgc tgtaacgtcc gccgttcgat acatcgacgg      4020
     taatctgtac ttttttgtta aacgacagtt cttcaaatat aacgaattta ctagaagtgt      4080
     aactatggcc ggtaaatttg attcggagat ttttggtatc gtgtgtccaa aggacggatt      4140
     gttagagcaa ttgcgcgctc ttttgaaaag actcgctcag atgaggaacg tattttcgag      4200
     cgaggacgat ttagaagagg agagggagga ggaagaggca cggaagtttt cgcatagtgt      4260
     atagagctaa ggatacgaaa cgtttacgaa cagtattgcg cgatctcttc gatcgtaaag      4320
     atgtacgata tcgagcgctc gcaggattcc gagacgtgcc gagtcgacga gagcgatgac      4380
     gcgaaaagga gaaagaggac gctcgacgat gacagatcga tcgcgtcgag tcatagtaac      4440
     gccggttata cgaataattc agttagaatt ctagaacgaa aatattcctt gactaagacg      4500
     ggatacaaat ttcttaatgt atgtgttact cttgagcgct cctcgcgcgt gaatattatt      4560
     ctgggagata gtcatggcaa ggaggtctcg atgtcgcccg atacgtggag gcagcttgtc      4620
     gagcaacgag acgttctctt gaagtatctg cagagtatca acggagaacc gtcctttcca      4680
     gccccgttgg atattggaaa tatgaccgtg cgtttcggaa aaatcaacaa cttgacgata      4740
     ttacgcctgg aaacatccgc ggctcgcctg gccatgtcga aggaaacagt gaaaaatatg      4800
     ttcgagctcg agcattgcat cagtcgactc gttatctcgt tgaccaagat attaggaaaa      4860
     attaatgcga aattggcacg tttcaaggat attgcgttaa ccgctaagga taaggaaaat      4920
     atctcgaaag ttatacgcga tagcgatgcc tacgatcgta acgacattat cgattgcgaa      4980
     ctcgttgctc tgtactttgg gatgtaagat tgagatgaaa taaaagtgag atatatcata      5040
     aacaatgttt tgtgtatttc ctcaagcatg tatataagta tagcgagcga taaaacaatt      5100
     cgattatagt ataagcaatg aatctaatta taatatataa gcactgaatc taatataatg      5160
     attaaaacta atttcaattc gattatagta taagcaatga atctaattat aatatataag      5220
     cactgaatct aatataatga ttaaaaacta atttgacata tgatataagt cgttaatgcg      5280
     atattacaat tcggtgatac attcccgtcg ttttgaccac cagtcgtaca atttgcacac      5340
     gttctccatt gcgcaatgct tcgcgtgacg ctcgcagtga aatgctcgaa cgtcgtccag      5400
     agtgcttagg cgccctatat cctcgaaatc cgcgtcaata gtctcgacga tcacgtcgtg      5460
     atccgcgatg acgtcgcagc cgagaatttc ctctaaccac ttctttttct ccaagccttt      5520
     gacgtacact cgtttaggcg cgtctcgcga ttgatcgcac acgctgtttc gaatcacgtg      5580
     cttcgagagt ctgtacgcga cgtcgccgtc gctccactgc aggccgtgat gattggaggt      5640
     tatccaacac gctttagatt tttccgtttt tgtaagaaga ttccaaggta tcgcttctcg      5700
     aaatattcga tgggtcagct cttttccatt ttttaatatt gccacctctt taaccgtaaa      5760
     tttttctcga acggtaaaac cttgcagatc gacgaagatc ggtatgttcg gcatcgctct      5820
     cgtaggaaaa ccgcgattac gtgagtttac gtacgacgtt cgtcagtggg ttatactcta      5880
     caactctatc gtgaatgatg agacaataag ccgttgtgtt agccggaacg ttctctttgc      5940
     attcgaattc tacgcgaacg tcgacggtgg cgctcttgat cgattcgttc tggtgggagc      6000
     aatcgatgac cactagcgga ccgtattgca gaaatctagt gacagacatg aacggttcgc      6060
     aagtctcaca cccgtaatac gtctttcgaa attttagata catatcgtac agtactgcga      6120
     acttgtttcg ctcgaaatct agattcatat cgtcgtaggg atagaactcg gaattcaaat      6180
     agagttttac attagtcagc ttacaattgt cgaatttaga aatgtcttct gacggtacgt      6240
     tttttttccg gtctgtagcg caaagatcac gtatcgcggt ttctccaatt gcgttgccgc      6300
     ttttaccgcc caggaatgct tggtcgtact ttgcaacagc ggaaattcgt atagatccca      6360
     cgaacgaaag cccatgctca gatatcgtcc actgtccaat gttcgcagaa gcgatagttt      6420
     gttaacgtca ttaagtatca cgtgtggcat tcgccactgt attcttaaca aggtgatctt      6480
     cggtctctga tctgaatacg ctacgacgca attgttatcg ttgcgagcgc gtatcagaat      6540
     gagttcgtgt cgcgcgttta tcactatgcg tttgtaatcc tcgcagaaac caaggagtac      6600
     gttgagaggc acacaaaagt tgaaatcgtc caacgctata ggcggtattt cccatccggt      6660
     gttctgtaaa actctatctc tctcgtagct caacgatgca tagtttttca tcaaggtcgt      6720
     tatgccgacg tttctgctct tatcgatctc cacgccatta agctcgtatc gaatctcgtc      6780
     gaacataaac gcgacgcagt tattgactag ctttgttctc gtaacttctt tcgccgtgcc      6840
     ttccttcgcc gtgccttcct tcgcgctctc tctcgtcgcg aattttccct cgatgtatag      6900
     aaaactttca cacggcaacg tatacagatc ctgttgctga ataggtattc gtatctcgtc      6960
     gctgtatccg aacgtagtgt tagcatatgg attgtaagtg tgagtttcta ttttcacgat      7020
     acgatcgtca aagatcgggg cacctccgat acttaaaatg tcgctcgcca tgtcgattct      7080
     tcacgacgaa acctaaagat cttaagaatg caacgttcgc ggcgttcagc tcgttcgctc      7140
     ttccctcgtg tgccttcctc gtcgcgtcgt tttgcggtgg gatcgcggat gtagcgtttg      7200
     cgtcttctct tcctctcgag taccactcat ttagaacgag catcttttgc tctcgcgcat      7260
     ttctctctaa tgccttcgtc gtcgcacgtg aagtcgcgcc gttatctctt ctccgcgaaa      7320
     atcgatcggt cgcccgtctt gatccacgat tcgaagcgtg atatcggtaa cgtttcgcgc      7380
     gatgatcgga aagtaaatga tcgatgttgg agcgttcgac agtttatatc ccggaggaac      7440
     attcggcgaa aactcgtgta tcgtgtgaac cggctcgtta ttgctgtacg cacctgcggt      7500
     gatattgcac tccacccgaa tgatatttac gcccatgata ttcacgggtc cgtcggacgt      7560
     atgccatttg ttcggtcgta gcacgcgcga cgatgagaat cccaggagcg aaccgatatt      7620
     gttcggtttc gcgaaatcga tttgatgctc gcatctaatt tcacttctca tagtgttctc      7680
     attggctcga atgatcagag accgcgcgcc tctctcgccc tcgtcgctct cgtcatagac      7740
     gatgtcgtcg ctctcgtcat cgtcgctcgt cctcttgctt tcgtcgatct ttcgcttttt      7800
     agagatagcg gcgtttagat atctgtctat cgcacttaat tcgtacgaac cttcgggaat      7860
     cacgatcgtt ttgtcgtcgt aatagaactt attattcgtg gaatcgacat tcggtatagt      7920
     gttgtacgtc tcgaaattcg tgagacctaa ctcgtaatcg tcgtcgctca gatctaaagc      7980
     gggaaaatag cacgccgtga gaacgctact cctaccggtg aacgaaagac tcagcgacat      8040
     cgcgaccgat tttcgagaga aatcgcaggc acaactgacc gcaaatgttc tgatcgtacg      8100
     tctgatacga tccgcgattg tacgttatat ttacgccgcc gagatatctc tcgagttccc      8160
     tcggcggtcg aagattgccg aaaccgtcga agtaaatcgc gtcgtttccc ctcttcgcat      8220
     aggcgaccca gtgagtaccc gaacccatcg agtcgtcgag attcacgatg ccactctcgt      8280
     tacgtcgcgc ctttaatggt aatgcgtcac gcataaacac tcctctgaag aagggtactc      8340
     gtagacgacg cgccgaacgg ttcaattgtt cgttcgtcgt gatgccggag agcggtaacc      8400
     tgagcgatcc taacgtttct ttccatgatt tttttttcgt tcttctcgtc acaccgctgc      8460
     cacgtttgta aggcgctaga tgcaatccgt gaccctccat cgctcgattg tgacgttgca      8520
     actcctccag ttgacgccgt gcagttttac tggcgtttac cgccttcgcg acacccgccg      8580
     cgccaccgat taaagaaccg agcgcgccta atatcggaaa aatgggtaac aagcctccac      8640
     gtttcactgt tggaagtatc ctcctcctcg ttgtcgtctt cctcctcttc tttctcaaac      8700
     ccatgcctag ctttgtcttt gttttcatag cagcccatac ggcggtcgcg gcagctctct      8760
     cgccgaaggt ggaatctccg gctgttatac gttcgcgcgc tttctcggcg agagctcggt      8820
     cggcgtcgtg gcgatcggcg agtttcttat ttcgcgaata ggcgatgtcg tgctcgcggc      8880
     acgccgcatc caacggattt acgcctcgat cgccgcgcgc caatcgtttc gcgagatggg      8940
     tgccgggccc acaaaattga tacccgggaa tatgtagttc gaagggaagc gcgtttatcg      9000
     ccgcattgag tagtcccacg ccgctaaaca ttcgttacaa tttttgataa gaggcgcagg      9060
     accgtctata tgcgattgtt gccacggacg attataatgt tccagacaca cgcgacaacg      9120
     ttgtacctcg ggatccgctc tcagatgatc gggtaatctg tcccacagta gctccacgta      9180
     tctgtcgaaa tcacgcacga gaacgaactt cggaataagt tgcaactgtt gagtggatag      9240
     attgagaata tcgcgtttgt ccgttaatag gggaaacata ccgatcactg tgcgcgatcg      9300
     aatcgccgtc gagtataagt ggagcaatta tcggtcgcgt cttctcgaag cgagcgcgcg      9360
     taaatgcgat tcgttcgacg gtcgccagct ataggagtgc tcaatctcga tcgtaaggct      9420
     cgacgaatct cgggcgacgc ggtcgggagg gcgcgcagac acggccctct actaccgaac      9480
     acgatacgtt gcatcatttg cggcccctcc aattgcggta aaacgaacgt gttgataagc      9540
     atgctcgaaa gtccgcatgg cgcacgcttt gagaatgtgt acgtctactc gaaatctctg      9600
     caacaaccaa aatatcgata tctggcggaa ctgctcgagt cgatggacga gatcggctat      9660
     cgcgcgttct caaacaatag cgacgtcgtg ccaccgagcg aggcgcttcc cgattcgata      9720
     ttcgtgttcg acgacgtggc ctgtgacaag cagaacgcga tcagggaata ttttgccatg      9780
     ggtcgacact cgaacatcga ttgtttctat ctttgtcaga catacgctaa aattccaaaa      9840
     cacctgatac gcgacaacgc gaatctcttg attctgttta aacaagatgg cactaaccta      9900
     aagcacgttt acaacgagca cgtgaacacg gatatgtcgt atgagaattt ttacgcctta      9960
     tgtcgcgcgt gttggaaacg caaatatggt ttcgtagtca tcgataaaga cagcgcgtta     10020
     agaaatggta gatacagacg aggatttaac gatttcgccg tggtgtaaag cgatcagttg     10080
     tgctacgaga atggacgttg acgctgcggc tggtacgaat gtcgctcggc tggaaaaaac     10140
     ggcgcgagag atcgcgaaga ctcagaactc tatacgtaaa aagtacagag agttaaagac     10200
     cggtgagata gaagaggaga tcgcgctgga gagacgactc aagccgatcg ttcagccgtt     10260
     gaaacgaatt gccgagaata ctacgcgaga cgagggaatc gacccgatcg cgttcgtcgg     10320
     tgctaagaga aaacgcgaaa ccgatgacga cgatgagcca tcgtctagat cgacgagaag     10380
     acgcctctcg acgagatcgc ccttgatcgc gacggtgagt cccgcgacta gaaacgaatc     10440
     ggaagaatca atctcgaacg cgcaatgggg accgttaggt cgcaaatata tgggcgcgct     10500
     tctaagcggg gacaaacaga gcgagatcga tcacgtttac ggagtgtact tcgatttaga     10560
     cggctcgatg cttggcgata ggcgattcga cgtgaccgcc gacgacagcg tgatcgtggg     10620
     cgacacgcga tatccgggta ccccgggctt gtacgagttg atcttcaaga gacttcccga     10680
     cgacgctgtg tacacggaga acgacaagca aacgtacaag agtatactgt taactacaaa     10740
     cgcccatcga cgtggccaca atgcgcttat gcctattcta ggaaacaaag gtttcaagta     10800
     caaacatatc atcgcgccgc tattgctcga taaggacaaa agtggcgctg gtattagtaa     10860
     agcgagaaaa aaagggatcg actctattcc atccgctatg cgggtgagaa acaaaggaat     10920
     cgagtacgtc cattgggacg atcccaacga actagtcgat cgtcttcgat tgctcgatgc     10980
     ctctagacga gctggcaacg acgctcacga caacgagatt ctatcgatac tcgaggaact     11040
     tcgcgagatc gacgcgatcg agtaaaacgt ggcgcgcgct ggtggcgacc ggtattcccg     11100
     ttatgttggt gaacaagttc ggaagaccgc tggagtcgtt cggcggaggc gacagggcac     11160
     gctcgcgacc gtcgatcgat tccttacgtc gctatatgcg taataacgct ctctgtctaa     11220
     gtgacgatta ctacgacgct agagacaaaa ttatacggcg tttagccaca cctagaaccg     11280
     ataccgacgc cgcgagtaaa agttacgtgg acagcgcgtt tcgagacgcg gaagcgaaaa     11340
     tctccgagac gagcgaattc tcgacaagca ctcgaacttt attgtcgaag atgaacgaga     11400
     gcacggttag atcgatcggc gaattggagg aatctatgac gcgcgtagcc agattgtttc     11460
     tcaaatacga tatgcagatc gccgagatta cgagcagatt atcgcgcgcg gtagattcgt     11520
     cacccgcgag ggcatgatgt ccgtgaataa attcgggaaa tctctggaga agcaacgcgg     11580
     cattgacgat cgttcgacga tcgcatccct gcgggcgtac gtgcgtcgca gcgcgctctg     11640
     ccttaatccg gacgactacg acgtcaacag acgtaagata cgccatttgg atacaccgat     11700
     cgatgatacc gacgcgacaa ccaaaggtta tgtcgacgaa gcgcttcgcg taaggagcga     11760
     ggaatcgaaa gttctaacga acgagctacg aaaacagcta gaagatatga acaagcgaat     11820
     tcggaatatt ctcctgcagt attacgacgt aaaaaccgag gtggacgttc tgcggcatct     11880
     cgagaagaag agcgaagcct cgctcgtcga tcacgacaaa cgaatagagg agacgagaga     11940
     cacggtggaa caagagctcg aaaaacggga cgaatcgcga gagagagatc tgagcgagat     12000
     ccgaggagtc atcgagacgc tcggtgacac tcaggagaaa cgaacgcgaa atctagagga     12060
     atcgctgcga cagatcgagg aaaggaggga agccttgttc gtcgatctcg ataaacgaat     12120
     aagagaaacg aaacaagcac tcgataaacg gaacaatcaa cgaattaaag atctgctcat     12180
     gtttcaacgt gagttaggac gaatggagga aaaacaagac aaagtgcgaa ctagagactc     12240
     gagcgagatt cgaaagaccg tcgagacgat cagcgacgct caggagaaac gaacacagat     12300
     cctagaggaa tcactgcata atctagagaa atccgtgcga aacgagctcg acgcatcgtc     12360
     gacgagccgc gagaaaatat cgacgaacgt ggagaatctc gcgcgtagcg tgacagatct     12420
     gacgagaatc acgagagagc taacgaataa agcggtaacg agagagacac tggacaagac     12480
     gctggcctcg ttgaacgtgg ataaaatagt gactagagaa acgataaacg aattactaat     12540
     cgcactaaaa acggatattc caaatatcat gaaacacacg attaacgttt ggaacgagga     12600
     acaggagcga acacgcacga ataaaaccaa cgcgaatcgc gcctcctcgt aaaatcaacg     12660
     atgagcgtcg agaagaggag actcgtcgag gagcttcaca agcccgcgcg aagaaatttt     12720
     ccgcgtcgtc gagtcgtagt gcgcgattac gacgacctgt ggcaggccga tgtcgttgag     12780
     atgcgtccgt acgcgcgaca aaacaaaggc tacaattacg tgatgacggt tatcgatgtg     12840
     ttgagcaaat acgcgtgggc tgtgccgctg aagagcaaga gcggaagcga ggtagccgcg     12900
     gcgttatcca agatatttcg cgacgacgct cgacatccgc gaaatctaca aacggacaag     12960
     ggcaaggagt tctacaacgc ctccgtaaaa gcgattactg acaggtacga tatacgccac     13020
     tactcgacgt actcggtgat gaaggcggcg gttgtggagc gatttaatcg cacgctcaag     13080
     aacaacatgt ggaaactctt cacgctaaac ggatcgtaca gatggctcga cgctctaccg     13140
     cgtttaatct cggagtataa caatcgcacg catcgaacga tcggaatgcg accggcggac     13200
     gtaactccag ccattgccaa gagactcctc tccacggtat acagtcactt gaagatcgca     13260
     gcccccgcaa gattcaaggt gaacgatccg gtacgcgtca gcaagttcaa aacgattttc     13320
     gaaaagggat atacgcctaa ctggacgact gagatttttc gaatcgctaa ggtgcaacac     13380
     acgaatcccg tgacgtatct gctaaaagac tatcgtaaag aaccaatagc cggagggttt     13440
     tacgaacacg agttactgcg agtttccaat cctgatatct atctcgttga gaaagtatta     13500
     cgtagaaagg acgataaagt ttttgtcaaa tggctaggaa tggacaatac acataactct     13560
     tggattcaca aaacagctgt attataatga ataaagaatg tacagtatca cttattctat     13620
     attagtacaa attttactta ttctatattg gtacaatttt ttatactaca ttagtatgta     13680
     ataatggtat cttataatgg tatcttataa tggccccacg gtaatgtatt agtggagtca     13740
     ggtattaagt atcgcttgtc gtcgtaagga ctcaaaacta gctttaattc ggacacggtg     13800
     taaacctcgt gcagcatcga gcgtatgcac gcctgacgtc tcgattgctg caacgattcg     13860
     ttcaagcaac acgcgaaatc ctcgaacgtt atcgttttcg cgacggtatt cctcctaacg     13920
     ccctttattc tcttcgtatc gctctttccc aaaactctca gagcatacat cttcgcccta     13980
     agtcctatga actccgtcat tatcgctccg ttgttctcat ctttcatcaa accaagaacc     14040
     ttcttattcg cgcgcggtat atcgtacgcg ttgtcgtcgg aataatcgct agtgtcaaat     14100
     ctcgcgatat ctcgcttcat attctcgtaa acattttgac attccagaaa atatatcaag     14160
     ctatcggtat ccgtgtacat aattttgcat ttagagcgat aaagcggtat catataatcg     14220
     taatgaaaat cgtacaatcg catcttagat atttctagaa tgcacatacc gacgtagatt     14280
     ggtttgttaa attgaacctc gagtttgcgt aactcgatag ccataagatt ctcgtcgaaa     14340
     acgctcctac tgtgaaaatt cggtttcgcg atcagcgcct ctgcgccata tcttccgtcc     14400
     caacgcgtca cgagtctcac gtctacgtaa ttgcgcacgt tctccattgt tttaccgaaa     14460
     accgcgttgt tcatcagctt atacagattt ctctcgaact cgttgctcgc gcgagttctc     14520
     cgttccgtat tgagctcgat gtacgcgcgc aaccaaggag actgcgcgaa tcgcaacgcg     14580
     cgatagatct ttgtcacgcg taaaccgtgt cgcacgcact gctgaagatt gcgataatac     14640
     gtcacgtaac gcgacttgtc gtagagcgtg gcgagtagct tttcgtttcg atttcccggc     14700
     ggtctctcgc gcgtcgggca aaacggaaga tccgcgtgat cgtcgtgaag atgtcgcgga     14760
     tattcgagat cgacttctag aatataacca atatcggagt cagatggcac ggacataata     14820
     tcgagaccct cgacattctc gacccaccga aattccgcat acggtaaagg ttcgcacatg     14880
     gcccagccgt agagattgtt cacatcgtaa tacataagat acgacgacgg ctgagacgag     14940
     tcatatgatg attcatattg attattaact cgcgcgtatc tattcgagca ttggcttaaa     15000
     ccgccgcgta taccgcgctc tacgaacatc accatatcga tatcggtgag cagatcgaat     15060
     cgaacgttcg tatatttcaa catagcgtcc cacgtatatc ccggtaatgt gaaataatgc     15120
     gctggatcca aattgtaact ttccatacaa gtatctcgaa aattttcaaa gacatccgcc     15180
     aagagaagca catccgtttt caaatataga tcgctgtatt cgccgagagt tttcacgtga     15240
     aaacgttccc atatccttcg cgcgtgttcg taatcactaa cactcacagt ttcaccagtt     15300
     aaagaactgt aaaaagcttc gatcggcggt aattcggtta ctaacagttt atcaacgcta     15360
     tcaatatact cataaggaaa tacgcccttg cgcgtgagca actcgaaatc ctccgcgatg     15420
     agatcagaaa attcgaatcg cgagatcctc aatttttctc gatctagata cgaaactact     15480
     ttttctaaac tagtattaag aaacttaaac gaatccacga aacgtagctt aacacaagtt     15540
     ttccattttc cgtacgtcga atcgttgacg attttcgaaa acgcgatgta attttcctta     15600
     gtcaacggta acaaatcgac tctaccctcg aaagcgttcg ctatatcctt aataatgaaa     15660
     tgtgcatcat aaccggatag attgtgaaaa aaaacaggaa taacgaacgc gttctgatag     15720
     ttcaaattgc aactcgcgtg cgcgggtcct ctatatcgtc cggtaagatg acagtgatca     15780
     cgcacacgaa tatcgtacga ctcaaagctc tttccgcaca cgtgacaatt tgtcgccttt     15840
     tgaaaagcgt tccactcgtt cggcgtgagc tccgacatcg gtacgctcgc gcacagaatc     15900
     ttcttcacgc gacacgcgag agcgcgcagc tcctcgacga accacgagac gcagtcgtcg     15960
     cctcggcgaa atctatacgc ggaaacgatt ccgtcgtacg tgctatgcaa ataatatcct     16020
     acgctaaacg ccttgtggtg ttgataggcg aatctattgt cgagactccc actgaatcgt     16080
     tgatttccct tttctaagac acactccaga tctgcataca cgacgaatcg tagtctctcc     16140
     tttctgtcgt gattgtgaaa agagagcaac ttgtcgtcct cgctcggaag aataacagca     16200
     cagtcgttcg cttttccgca ctcgatgcta tgcgcgacca atttctcatt tgaataaaaa     16260
     taatgtagac atctgaaaaa tacaatatat aattaataca aaatttatct cgcaacgaga     16320
     ataatctctc ttacgcttac cgatcgcata tgtatttttt tccttatgct tatttatttg     16380
     cgacgttaac agtcgagaca agtgctttat ccatacgaaa tgaccgacat tatcgccgcg     16440
     ccgttcgttc gacagataga gcaaatttac gtgcgtagac tttttgtttc ccgtaagcga     16500
     caaaggaacg atcatgatat cgtttctccc cgttttctct cgaatagcaa atacgttaat     16560
     agacaaatca ttgagacgtt cgaatctagc gatatttcgt agtgtcatag gaaaatcaat     16620
     accatcgaaa ttcagcacca acgaatagtg aggatacgac gacgatctat ccgagtgtat     16680
     atcaacggga tatagagcgg ccatcaccgc ccacgcgaaa cacgcattgt cgtgtgaacg     16740
     tacattaatc acggctctct tatatcttat cttcggagga agtaacatcc aacatccagc     16800
     gtgcataaga ttacacttat ttacattaat cattaaattt aatatccgaa ataacgccca     16860
     accgctatcg cgttcctgaa attcctccag cgacgtcaga acaacattca taacgttccc     16920
     gtcgtaccat tctcgtagat cggacatacc gaatagctga caattcttcg tgcgaatgct     16980
     cttaacggcg cttttatcat tcgcgacgaa ctccccgtga aacacggtgt tgacctttaa     17040
     acacgcgtgc atatcaagat cgactcgcac tcgctcgagc accgtggccc tcgcgtcctc     17100
     aagaaaccgt cgaggttcga tgtactcgat atttaccaca gcacccgttc gtacgcgatt     17160
     cgcgaaagcc gtctcgatat ccacccattc gaatcccttc gaaccgtcgt atcctgcacc     17220
     caagtaacta aaacgtcgac tcaaagcgaa tctcgcaccc tccaactgcg ctattcgaga     17280
     gattaaagaa tttatcgttc cggtaaccgt aggatcgact ctattctcac atctttctct     17340
     caagacctcg agacactcga tacactcctg ttcccaaata cgataggcgc acaccccttc     17400
     aactcccgcc gcgcgttcga gaagatcgcg actcttctcc atgtcgcaac ttcccacact     17460
     gtgttacccc aattgtccgt aggaacgacg aatttaacgt ctcgaacttt tttctctctc     17520
     gctgttctct cgtagattac cgctctatcg ctcagagcga gcaacgtttc gatccacagt     17580
     ttctctcgcg gactctccgt accgatcccc cgtcgcaagt gatacgtggc cacattccag     17640
     cgaacatttt ctctcgtcac gatccactcc ttgtcgttac cgggcgcaat agtctcgtga     17700
     cactctaaac tatcgtcact ctcaataagc aactcgcaac gatcgtcatc gggatcgcga     17760
     tacgtcacgt tacgatcgaa cgcgcgtaaa aacgattcgt cgctctcgct cgaagacgaa     17820
     ccaccgttag gcgcgactgt ttccatatac gttcctaaca atgagagaaa atgcctctca     17880
     cgactagata tatacccccg agacagcgtc gaaaacgcga caatcgcgac attccgaaat     17940
     gacaaaacac gtgacatctt acataatcaa aacgcgcgtc ttcccgttgc aacgaaaaca     18000
     ggatgcgcta gatccccgcg gaaaccgtct agacacagaa cgcgcctaac cgcaacatcc     18060
     tacaaatagc tctttcctgt ttttatatgc ctgatacaat aatacaacaa tagagtaata     18120
     aaataataac aatagagtaa taaaataata acaatagagt aataaaatat tctctcatca     18180
     ttaatactcc tacgacaatt ccccctcctc gcacgacctc catctctcat acattcccaa     18240
     taccgttgtc cttgatattg cacattaaat ctctcattat taatactcgt gcgacgattt     18300
     ccccctcgcg cggtctccac ctctcgttac tcatacgttc ccaataatat aacgtcatcc     18360
     tcggtatcac taattgaaga ttcccgacgc atcgtcgatc cgcctctcgt ccccgcgata     18420
     cgccgcaaac gaacgaggaa aaactccgtt tctctctcgc ggttaatctt attctctcat     18480
     acatattcat atatacaatc catagttata ttacgattat aatacatact tacatgcgcg     18540
     cacacttagt tgcgccaatt gttgccaacg cgctctcttc tttttctctc ctcctcgtac     18600
     gcggctgacg aaacgacacc gcttttcctc ccatacttac gatgagcgca aaaaaacatc     18660
     tcgtcgtcat cgttatcatt aaacacatcg taataaccgc tttcgtgaaa attcaccatg     18720
     tactcctgtc gcctgctaat ctcgatcggc ttcttctttt cgtagagtac ctccaataaa     18780
     agattatatg ccatccctcg ataatgatga catacgcacg cctctattat ctttttaggc     18840
     gaaatctcac gttgaggcgg aactcgacaa ccgcgcctct ttaattgatt ggaaatcggt     18900
     gcgtattgtc ctctcacgac gtattccgtc acattgaccg atggatacgc cgtsacattt     18960
     cgcaatggag aggatgttag atcatccagc gaatggcacc aacacatctc atcgtcgtcg     19020
     atcattcgtg tctcacatat ctggcaccga ttcgccactt taacggttct cgccatcgta     19080
     aacacacggc gacaagtatc gctcaaaaaa tcgcctcgac gacgcgtcaa accacaacgt     19140
     tctacaaaac aggacaagcg ggcatgcgtt atatatcctc atagtcacct agacataaaa     19200
     acacgcctaa ggcgatgtaa caaaccgcga catcccgcgm aacaggacgc gctaggccac     19260
     gcgagacgcg cctgatcgcg acgttatgga aaacagacaa accgcaacat cctgtaaaca     19320
     acgcgagtcg cctcgacgac gcgcctaatc gcgacgttat ggaaaacaga cacgcctagg     19380
     gcgacgcgac aaaccgcaac atcctgtcaa caacgcgagt cgcctcgacg acgcgactaa     19440
     tcgcgacgtt cgcgcccaag gctacgcgaa aagcgctaga ccgcgcggaa aacgctaggg     19500
     cggcgtaacg cgcccaaggc tacgcgagcc cgaaaaaaac acgctaaggc ggcgtcgatg     19560
     acgcgcccgg ggttacctag cgggaaacgc taggacgcgc ccgaaaaaaa aacgctaggg     19620
     cggcgtcgag aacgcgcccg aaaaaacgct agaaaaacgc tagaaaaaac gctagaaaaa     19680
     acgctagaaa aaaacgctag aaaaaaacgc tagaaaaaaa acgctagggc ggcgtcgaga     19740
     acgggggaac cgacccgggg aaaccccgcg accgccttac cgaccgagag ggataaacct     19800
     gtctcgacga ccgccagagg gatccacctt ctctccccgg atacgaaccc tctgaagaaa     19860
     gaaaatcatc ttaccgacaa agggggtccg aggtcccctg gggattctac gattccccct     19920
     ctctcccctc gccccccccc catgcccctg ggggacctcg gacccccttt gttatcctac     19980
     t                                                                     19981
//
ID   Polinton-6_CoFl repbase;    DNA;    INV; 18639 BP.
XX
AC   .
XX
DT   25-OCT-2019 (Rel. 24.11, Created)
DT   25-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-6_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-18639
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2110-2110 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. ~60-bp TIRs. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           13140..13829
FT                 /product="Polinton-6_CoFl_8p"
FT                 /translation="MGDAFTLSLSSTSSVLEAQYFPPIELSPQKNYVLGLV
FT                 ELLTFNSIPNIDESNNKFYVGEEVVTLPTGSYEIQDIENFLIDILTPEDIS
FT                 ISVKPNNNTLRSIILCSHPIDFRPEDSLGSVLGFTKRILTPNKTHESDKPV
FT                 XILKVNALRVECNITTGAYINERKVHTIHEFFPAVPPGYKIIEVPTQIIYL
FT                 PVAVKTIDHLQVQIVDQEGKLINFRGEVITIRLHVKQLN*"
FT   CDS           10532..10128
FT                 /product="Polinton-6_CoFl_5p"
FT                 /translation="MTDGLMELLIKKHPDKAYMTPDNLAQYKQILETSSAH
FT                 KRKFDKNETIRPYNSKKFNDVIAPLFNLTHVKKKGGSIPSFKIAKLNTQMD
FT                 YVYWDNPNELVNRLRLLVAERSAGNPSHTNEINSIVEELREANIIY*"
FT   CDS           18038..17625
FT                 /product="Polinton-6_CoFl_11p"
FT                 /translation="MLPIKEVEEPQTPEDSLEPVIESAVVPAINEDLLQVL
FT                 NFRRRRTFPFDKSIYNVVAEVLVWPNHYRYYSIYTNDIRELEREFPNVFTG
FT                 TYNWCSYNTYYSVRAPVHMLVYFGEHGYSPLTAINLQEFQRTMGEDLIY*"
FT   CDS           join(11391..11082,10992..10640)
FT                 /product="Polinton-6_CoFl_6p"
FT                 /translation="MIFDDIACEKQDNVRAFFCMGRHKNVDCFYLCQSYAQ
FT                 VPKHLVRDNLNLLVIFRQDDMNLKHIYNDHVNTDMTYNDFKKLCVKCWGVG
FT                 KHGFVVIDKERDVNNVNMDAFHKEKHVLQQIEKAREAVKRKHRLLKLGKEN
FT                 FEKQISETFKPITDPLHKIIYKTNKEKNVPQSFEFPSKEPFKPFKPKNHID
FT                 TSMFQSANSNSDDEDGKEDIYKYLMKISQN*"
FT   CDS           join(9751..9316,9170..8845)
FT                 /product="Polinton-6_CoFl_4p"
FT                 /note="integrase and chromodomain/chromo shadow
FT                 domain."
FT                 /translation="MEAVVEELHKPARRNYLRRKFDVRGLDETWQADLVEM
FT                 IPYARENKGYRYLLTVIDVFSKYAWAVPVKNKTGTDVTAAMKTILTEGRVP
FT                 TNLQTDRGKEFYNVNFQGLMKNYKINLYSTYSNLKASICERFNRTLKHAMW
FT                 KKFSVRGTISKLKVGDKVRVSNTKQVFEKGYTPNWSTEIFTVTRVAPTKPF
FT                 TYHLEDYQQQXISGGFYEQELQKTKYPNTYLVEKILRRRKNQIFVKWLGFD
FT                 NTHNSWTSKDQL*"
FT   CDS           join(3174..2843,2763..2613)
FT                 /product="Polinton-6_CoFl_2p"
FT                 /translation="MAKYVIDIQGFKTIFNEFIFKEVAILPLEEEDSTPTV
FT                 FLFKPPHPWGQLRPENKRENRWLERNYHGLLWDSGEVPYEDLIVTFQSIIK
FT                 EDDVIYVKGLEKTKWLRQVLLNRFIYNFEECLSLKQFNMTHVTCTNHTFKS
FT                 AYCAVKNAAAIKKSILKKNKA*"
FT   CDS           join(16058..16739,16874..17085)
FT                 /product="Polinton-6_CoFl_10p"
FT                 /translation="MDFYEDYVIEIGGFLDASRQFLPKEVAVVSLMRPAIS
FT                 HWIVRPPCNFSTLPMDVRQNNDFQSKRVHGLRWFEGDCSIRKLQQHLYTVA
FT                 KNAHRIYVYEDNTATYLESTIGCAVINIQQYMVPSRHILSTGYSTKALMCG
FT                 THDVQKSLRRKXYCALSKAHQIKLWLCSLVESSIEPDSECFLDALNSYKKK
FT                 ISKMPPSWDTIDGTNTDDTDTDSDSETDTNVDVKNDVRNINNMGPIFSKPK
FT                 YESLSKEEEKDKNIRKPLIEKHVEASQPKVKRNYYSENICSHPKKDGYDIL
FT                 KKKNQ*"
FT   CDS           join(11894..12631,12781..12999)
FT                 /product="Polinton-6_CoFl_7p"
FT                 /note="Parvovirus coat protein VP1."
FT                 /translation="MIIHRRKGRGVINTVINKLPVELHVPGYQYCGPGTKL
FT                 AKRLARGDPGVNLLDEACKQHDIAYSQNPDDITARNEADKILSEKAWQRFK
FT                 AKDSSIGEKATAFAVSSAMKVKSKLGMGLSKNKKIKKVRKKKLGKSVTLKN
FT                 LIQSAKTSMVTSKCARKVVSSALKGARKALKKAGGKKNIRTPRILHIPQKI
FT                 GGFLPYVVPTFAGLSAVGAIANGASGIYKAINQANEAKKQLEESARHNKKW
FT                 KLFYLIPHFRGVFMRNDMPSSGPHQNESAIVNLDDKDGPGTHWVAYKKQGD
FT                 DVTYFDSFGDLQPPLDLMLYLRCWYY*"
FT   CDS           join(14031..15227,15298..15783)
FT                 /product="Polinton-6_CoFl_9p"
FT                 /translation="MEEILNVQSGVTFDESIAHYEIHAHQPYISSAFNNSD
FT                 EIRISIQHQDLCLLPSQSAIHIVGRITLNNNTAVTRTELVNNAICHLFEEI
FT                 RYELNAIEIDKCKNVGITTLMKGWISHYPGQSSMLENAGWLDIAETNKLVN
FT                 DEGYFDVSIPLSMILGFAEDYRKVVVNAKHELILTRSRNDLNAVVQTAASD
FT                 VYEDFKITLTRIEWLMPYVSASDRLKIRLLNVIAKDKPISMSFRNWELYEY
FT                 PLLPTTMKHVWTVKTSNQLEKPRFVVLGFQTNRKGQKAVNASRFDHCNISN
FT                 VKLFLNSQYYPYGNLNLNINHNQFSLLYNMYTNFQNVYYGKETEPMINKND
FT                 FITHMPLIVIDCSKQNEALKSAPVDVRLEFESRDNFPQGTAAYCLILHDRI
FT                 IEYNPLVYAMMEYVVDMQGFKKPGNDYVLKELAILSLSERVEPQVFLFKPP
FT                 FPWRKLSQKYKRENLWLELYYHGLDWKSGNINYTEVGNVLRENLKDAKNIF
FT                 VIGELKKRWLERFSFQVNDMTDYPEFELPTLATTCPHHNGAYKSMCATHNV
FT                 KRMKKFYFGVGRC*"
FT   CDS           join(1799..1666,1422..1383,1308..1101,1050..668)
FT                 /product="Polinton-6_CoFl_1p"
FT                 /translation="MPPSEEAVVPNDTPTPLIESATLPIVNPGFDLLLRSR
FT                 RRQRFPFNIAWRTEEDLSSEMQWYQQQSQKMYSLRHYFNLFLINVMQYCNK
FT                 ILDKYLMYDDVTIYDLRKHMSPQEKEKKEVGIDTSQKISSRQCNNLRYHQT
FT                 SLCSKHENMKKPLCAAYHLMGKAEATEGFTRAHEGLVSFLELLLRRQYSFV
FT                 YNLNDKGHKKWERELEFISRHYYLQNGVIKEIDCDKDECEELCHLVRGFFT
FT                 SDGELIMYKRVFK*"
FT   CDS           join(3373..4216,4358..4545,4652..4796,4872..5331,
FT                 5405..6002,6150..7391,7469..7858,7959..8285,
FT                 8387..8686)
FT                 /product="Polinton-6_CoFl_3p"
FT                 /note="DNA polymerase B."
FT                 /translation="MERLFDNSANADCVENFVIFCEIVRVEHQRLLNGENT
FT                 TKIQDIVDNSVIVLESIKNYQQSVKLSPHIKQKLLNIECLITTFLETFFKK
FT                 LEIQGHGLANTSSHDDDAAVVWKELDSAFQNRIRTVIIVNSKHLDVVKFLN
FT                 SAEKEFVLKVPEILNQQHALKINAVLAAEFVLVKNDTETTEVKYFNTKSEC
FT                 IFHTTDLHEWFENNVQKPIATDIDEFQERDSGWTLRSILNLVVNINKYQAM
FT                 NGSSYIELPSSIIKKKACVNVKNLDHQCFKWAILSALHPAKKRKNTFKTFP
FT                 LHLTAEKKAKHVNLLLIENQYIEMDDKGKTNKKQKKFNNEDDDFNYSEMMR
FT                 EVYEEYEEEDAESEESLESRVSRTDDDEYHCHYVWVKDLSRLVRSSLTKLE
FT                 CVKVNKCKVSLPKCGNNILKFENYKNKNQVPFIVYADFECLLKPVHNSERA
FT                 IQHHEALSVGYYVKCSFNDTKSRYVSYRKETESCENPATWFVKEMRDLAVN
FT                 LQSMYNNPVPMRLLTEEEDFDFFNADKCHICEKYIKNDDKIHDHCHFTGRY
FT                 RGPAHNECNLKYQDSRTIPIVFHNLSNYDAHLFIQELVTCFPGRVEVIPQT
FT                 KEKYISFTKYVEGTRINLRFIDSYRFLPSSLDKLASYLEQHNILETTFSQD
FT                 DAYTMDQIKLLKRKGVFPYDYVTSFEKLQETVLPSKNDFYSKLYDAHISTE
FT                 DYIHAQTIWKIFNIANLGQYSDLYLKTDVLLLAEVFENFRSNCLEISLELI
FT                 TDIDMFMFIEKGIRGGISQCCNRYAEANNHYMDDYRKNDAEKYIIYLDVNN
FT                 LYGWAMTQRLPYGGFEWVENVDKQSHDFYKISNESDYGYILEVDLEYSEVL
FT                 HDSHKDLPFCSEHISAPNSKQKKLMTTLHNKHKYVLHYEALKQAENHGLRV
FT                 TRIHRALKFQQSKWLKEYIDLNSDKRKKAKNEFEKMLFKLFNNAIFGKTME
FT                 NERKRINVKLLDHWDGRYGAGAYIAKPNFHSCDIFDENFVAIQLQRLEVMM
FT                 RKPIYIGLSVLDLSKTLVYRFHYDYMISKLKNDCKLLYTDTDSLIYEIKNH
FT                 DIYEMMKTDIQEFDTSNYPEDNKYKMPLKNKKIVGLMKDECNGNIITKFVG
FT                 LRSKMYSILVQNQDIIKKAKGVKTNVVKATIDFNDYIDCLRDQNININREQ
FT                 RCIFSNITDTLPWGHYKVNQKRRDGVVEEEKAKEDGENVTSPRSESHADIS
FT                 PGDHKVINRELRSQQMERKKNSDEDRRETACIGERIREGISVVTSRKEIEE
FT                 PSHPEQLQNKRTYDQMQNNEPDREILDPNDEINKERNREEQKGDDNGQEVT
FT                 CQKETSGGGITVVELPHVVVETLYKKPQQQPQXSLIRVARQQHQVIDRLVF
FT                 EARGIDQQQPHKRTSVGTDNFEELSLRKKAKHNFEMSDLAALNKAASGGFL
FT                 PCKKITEMIVNHSYMVTKLKKVNTKYGTKAVVELNDEFQIFLPSAVSKNIV
FT                 DNEAMYNNLLDSIQKMELFITYNGCHIQFSSV*"
XX
SQ   Sequence 18639 BP; 6296 A; 3169 C; 3380 G; 5778 T; 16 other;
     agtaggtaag ctgggagggt tctggctcac cccccccccc caggaggaag ctgtagcgtg        60
     agggttctgg ctcaccaagg gggggggagc tgtagcgcga gggtatgggg ctccgcgggc       120
     ggagggggag tgccacaaga gcgggtcagc cgagctatat tgcgcgagct tatccgcgct       180
     cctctttcca gtgtcggatt gttctctaga ctcgctttgg gatgggacca tttacctaca       240
     cgcatgaaaa tgcacactcg tgtacgcgca tgtgtaagtg ctgatgctgg atggtatctg       300
     gcttactccc gctccgaggg aggggacgat cccatgtgtt gtacttgcga ggaggccccc       360
     gctttgacca ctcacctata cgcgcatgca tgaaaatgca catacgcgta cgtgcatgtg       420
     taagtgcgcg cgcccgtgct aatattttcc aagtgatcat acctatatcc tcccaatcgc       480
     tcaacgcttg cccacttgcg tgctattttt ttttctcgag agcgggtgca tagagttatg       540
     ggctatcaaa taaatacaaa aaatatattt ttaatacata tattgtataa aaacacacat       600
     cttagaaata agcttacata tgagcgcgca aacaaaactt gatacgtatg tttttaagaa       660
     cacacactta tttgaacact cttttataca ttattaattc accatccgag gtaaaaaatc       720
     cccgcaccag gtgacacaac tcctcacact catctttgtc gcaatctatc tcttttatca       780
     ccccgttctg aagataatag tggcgactga taaattccaa ttcacgctcc cactttttat       840
     gtcctttgtc gtttaaatta tacacaaatg aatactgtct ccgcaacagt agttctaaaa       900
     acgacacaag accttcatga gcccgtgtaa aaccttctgt cgcttcggct ttacccatca       960
     ggtggtaagc agcacataat ggttttttca tattctcgtg tttactacac aatgatgtct      1020
     ggtgatacct taagttgttg cactgcctac ctggataagg ggatatcaca cgagcctcac      1080
     acaaatataa tttcttgaac ttgagatttt ttgcgatgta tctattccaa cctctttttt      1140
     ttctttttct tgaggtgaca tatgcttgcg taaatcgtag attgtaacat cgtcatacat      1200
     taaatattta tccaaaatct tgttgcaata ttgcatgacg tttatcagaa ataaattaaa      1260
     ataatgacgt agagaataca ttttctgaga ttgctgctga taccactgct gtaaaaaaaa      1320
     aaaaaaaaaa ataaaagaaa tgacatttat ttttaaaaaa taagtaggag tgaacaactt      1380
     accatttcag aagataaatc ttcttctgtc ctccacgcta tactttaaaa gttcacagca      1440
     scgcaaaaca gtgtawgtgt cttttttaaa gtataaaacc acgtgtaatg gatttgcgtt      1500
     acttttagct ttaaaataca agttatacgg tttccatgta ttcctgtcag twataagtcc      1560
     wggtaataca cattcaagtg ttcaactgga atgwcccaca attgaaaaaa tctataatga      1620
     tttttccaca gtagaatttc cacgaccacg ttttctctaa cacacttgaa aggaaaccgt      1680
     tggcgacgtc tcgaccttaa caatagatca aatccaggat tcactattgg taaagtcgca      1740
     ctctcgatta agggtgtagg agtatcgttg ggaacgactg cttcctcgct cggaggcatc      1800
     tcaacgactg caaccttttc cagcagatct ttttgttata aaaaatttta agctagtgga      1860
     gagttgtatg ttctaactgt aaatataaaa aaaaacgtgc atgtatattt ttaagccctt      1920
     atctatagta gacttgctta ttaaattaca atatagggtg atattcaata tgtctcaata      1980
     ataagagagc aaaagcattg tgcaaaattc attcttaaaa atgcctatgc tgaaataaaa      2040
     agtgggtacg tgttttgata cgtaaaaaaa tatttactta ttagtgcaca tataagatgt      2100
     ttatcccgta ttatgcgctt gcctatttaa agagaggagt ctctctttcg gtcgggtgag      2160
     atktgacaga tgaagcgata agagctaagt caatgtgttg tataaataaa agtgacccgt      2220
     taccgtggct caattgccaa ggtatgagta tgaataaagt gtacctgtct gctattagca      2280
     cgaaagagca agtgatagat cttgttaaac gaggaaagct ctgccgaagt atattagctt      2340
     acatacgcac acatattgat gtgtgatact taaattatac actcgtactg aaattttggc      2400
     cgtgtcagac atcagcatct tacctgaagt agatgagcaa agcggcttaa gaggatgggg      2460
     ataaaaaaat caacacttat aaataatttt ttgtgatcat tttattgatg cacataaaat      2520
     aatgtcactt ctcttaggca gtggtgaaca aaattggttg actgtatttt aaatttctat      2580
     aaatcaactt tatatcaagg atagcttatc tgttaagcct tattcttttt taatatactt      2640
     ttttttatag ctgcagcatt cttcacagca caataggctg atttaaatgt atgatttgta      2700
     catgtcacat gagtcatgtt aaattgtttc agtgacaaac attcttcaaa gttgtaaatg      2760
     aacctaagag ggagaaaata gtcctttagt ttttatttat tatcttttat ttattataca      2820
     ttggatttta tgaatcatat acctattgag gagcacttga cgaagccatt tcgttttttc      2880
     aagtccttta acataaatta cgtcatcctc tttaataata gactgaaaag tgacgattaa      2940
     atcttcatag ggcacttctc cagagtccca aaggagacca tggtaattac gttctaacca      3000
     tcgattttca cgtttatttt caggccttag ctgaccccag gggtgggggg gcttgaaaag      3060
     aaatactgtt ggtgtagaat cttcttcctc taaaggtaga attgctacct ctttaaaaat      3120
     gaattcgtta aatatagtct taaagccttg aatatcaatc acgtatttag ccatcttcaa      3180
     gctagtacaa ctaacagcca actgacatta atgcttactt acaacctctt tttatacact      3240
     atacgtgtat tatagttttt tttattgcac caccackagg tagcgctttt atctacgtaa      3300
     ccaaatagct taaaacatat gtcaaagcac cgtaggaatc atttgaggac gatagcaatc      3360
     ggtgtcagca tcatggagcg actttttgat aattctgcta atgctgactg tgtagaaaat      3420
     tttgtgattt tttgtgaaat agtgcgagta gaacatcaac gactgttgaa tggtgaaaat      3480
     acaacaaaaa ttcaagatat agttgataat agtgtgatag tgcttgaaag cattaaaaac      3540
     tatcagcaat ctgtgaaatt gtcaccgcac attaagcaaa agttattaaa tattgagtgt      3600
     ctcataacaa cttttttgga aacatttttt aaaaaattgg aaattcaagg acatggtctt      3660
     gctaatacat caagccatga tgatgatgct gctgtggtgt ggaaagaact tgatagtgcg      3720
     tttcagaatc gtataagaac tgtcattatt gtgaatagca agcacttgga tgtggtaaaa      3780
     tttctgaact ctgcggaaaa agagtttgtt ttaaaagtgc cagaaattct aaatcagcag      3840
     catgctttaa aaattaatgc agttttagca gcagaatttg tcttagtgaa aaatgatacg      3900
     gagactactg aagttaagta ctttaacact aaatcggaat gtatttttca tacaactgat      3960
     ttgcatgaat ggtttgaaaa taatgttcag aaacccattg ctaccgacat tgatgaattc      4020
     caagaacgag attccgggtg gactctgcgc tctattttaa atttagtagt aaatataaat      4080
     aaatatcagg ctatgaatgg tagttcttac atagaactac ccagttctat tattaaaaaa      4140
     aaagcttgcg ttaatgttaa gaatttagat caccaatgtt tcaaatgggc cattttgtcg      4200
     gcactacatc ctgcaagtaa aaatgcgtat cgagtctcga attataaaaa atatgaaaat      4260
     tattacgatt tcactgggat aacatttcca gtgcaaccta agcaagtacc gaaatttgaa      4320
     aaacaaaatg atatttcggt taatgtatat tttttagaaa agagaaaaaa tacttttaaa      4380
     acttttcccc ttcatttgac agctgaaaaa aaggctaaac atgtaaattt gttactcata      4440
     gaaaatcagt atatagaaat ggatgataag ggaaaaacaa ataaaaaaca aaaaaaattt      4500
     aacaacgaag atgatgattt taattattct gaaatgatga gagaggtaga agaagaagaa      4560
     tgatgatgat gatgcagaag aagatgatat agaagagagt gaagagacaa attatgatct      4620
     taaccgtgct aatgatggga ttatagaaga ggtatacgaa gaatacgaag aagaagatgc      4680
     tgagtcagag gaaagcttag agagcagggt tagtcgtacg gatgatgatg aataccattg      4740
     ccattatgtg tgggttaaag atttgtctcg gcttgtaaga agctctctta ctaaatgtaa      4800
     acgtaaaata cacatttgcg atcgttgtct gcattacttc aaaactaatg aaaaacttat      4860
     aatacacaca gtggagtgcg ttaaagtcaa taaatgtaaa gttagcttgc caaaatgtgg      4920
     taataatatt ttgaaatttg aaaattataa gaataaaaat caagtgccat ttatagtata      4980
     tgcagacttt gagtgtttat taaaacctgt acacaatagt gagcgagcaa tacaacacca      5040
     tgaagcatta agtgttggat actacgtaaa gtgcagtttt aacgatacta aatcacgata      5100
     cgtttcctat agaaaagaaa ctgaaagctg tgaaaatcca gctacctggt ttgttaaaga      5160
     aatgcgagat ctcgccgtaa atttacaaag tatgtataac aatccagtgc caatgagatt      5220
     actaactgaa gaagaggact ttgatttttt caacgctgac aaatgtcata tatgtgagaa      5280
     gtatattaaa aatgatgata aaattcacga tcattgtcat tttactggaa ggtaaatatt      5340
     ttttttacac ttctaatgaa tattattttc tcctcaaagt tatttataaa tttttttatt      5400
     ttagatatcg aggccctgca cataatgaat gtaatctcaa ataccaagac tcgcgaacaa      5460
     tacccatagt tttccacaac ctaagtaact atgatgcgca tttatttata caagaacttg      5520
     ttacttgttt tcctggaaga gtagaagtaa tacctcagac gaaagaaaaa tatatttctt      5580
     tcacaaaata tgttgaggga acgagaatca acttacgttt tattgactct tatcgatttt      5640
     taccttcatc gctcgataag ttggcatcct atttggaaca gcataacatt ttagagacta      5700
     cttttagtca agacgatgca tacaccatgg atcaaatcaa attgcttaaa agaaagggtg      5760
     tgtttccata tgattatgta acatcatttg aaaaactcca agaaactgtg cttccatcaa      5820
     aaaatgattt ttatagcaaa ttatatgacg cacacataag tactgaggat tatatacatg      5880
     ctcaaactat atggaaaata tttaatatag caaatctcgg acagtattca gatttatacc      5940
     tcaagacaga tgtgcttcta ttagcagaag tttttgaaaa ctttagaagt aattgtctag      6000
     aggtatacaa attagatgct gctcactatt ttacaacacc aggctttact tgggatgcta      6060
     tgttgaaaaa accaaagtaa gtttaccata tatatacaca aagagtttca ctagaacatt      6120
     aaaaaataaa tttataactt tttttacaga tttcactaga actcattact gacattgaca      6180
     tgttcatgtt cattgaaaaa ggtataagag gaggaataag tcagtgctgc aacagatatg      6240
     ccgaagcaaa taaccactat atggatgatt acagaaaaaa tgatgctgaa aaatatataa      6300
     tctatttgga tgtgaacaat ttatatggtt gggctatgac tcaacgactt ccttatggtg      6360
     gattcgagtg ggttgaaaac gttgacaaac aatctcacga tttttataaa attagcaatg      6420
     aaagtgatta tggatatatt ttagaagtag atttggaata ttcagaggtg ctccatgatt      6480
     ctcataaaga cttaccgttc tgctctgaac acatttcagc tccaaattca aaacagaaaa      6540
     aattaatgac tacgttacac aataagcata aatatgtact tcattatgaa gctctcaagc      6600
     aagctgaaaa tcatggatta agagtaacaa gaattcatcg ggctttaaag tttcagcaaa      6660
     gtaaatggct caaggagtat atagacctga atagtgataa aagaaaaaaa gctaaaaatg      6720
     agtttgaaaa aatgcttttc aaacttttta ataacgctat ttttggaaag acaatggaga      6780
     atgaaagaaa gcgaatcaat gttaagcttt tagaccactg ggatgggcgt tacggtgcag      6840
     gcgcatatat tgctaaaccc aactttcata gctgtgatat ttttgatgaa aattttgtag      6900
     cgattcaatt acaacgattg gaagtaatga tgagaaagcc catatatatt gggcttagtg      6960
     tattagactt gtctaaaacg cttgtatacc gctttcatta tgattatatg atttctaaac      7020
     taaaaaatga ttgcaaactg ttgtatactg atacagacag tttaatatat gaaattaaaa      7080
     accatgatat ttatgaaatg atgaaaactg acattcagga attcgataca tctaactatc      7140
     ctgaagataa taagtataaa atgccgctta aaaataagaa aatcgtggga cttatgaagg      7200
     atgagtgtaa tggtaatatt attacgaaat ttgtcggtct tagaagtaaa atgtacagca      7260
     ttctcgttca gaatcaagac ataataaaaa aagcaaaggg tgtcaagacc aatgttgtta      7320
     aagccaccat tgattttaat gattacattg attgcctacg cgatcaaaac ataaacataa      7380
     atcgagagca agtaaatatt agatctcgtc tgcacaagat ttatactgaa aaacaaaaaa      7440
     aatagctctt agctctcgtg atgataagcg atgcattttc tctaatatca ctgacacatt      7500
     accctggggg cattataaag taaatcaaaa acggcgagat ggagtggtag aagaagagaa      7560
     agctaaggag gatggagaaa acgtaacaag tccaagaagt gagagtcatg ctgatatatc      7620
     accgggggac cataaagtaa taaatagaga actgagatca caacagatgg agagaaaaaa      7680
     aaatagtgac gaggacagac gggaaacagc ttgtatagga gagagaattc gagaagggat      7740
     cagcgtggtg acatcacgaa aagaaataga ggaaccttca catccagagc aactgcaaaa      7800
     taagcgtaca tatgatcaaa tgcaaaacaa tgagccagac agagaaatat tagatccagt      7860
     catagagaaa aattaaagag cgaaatatga taacttttag ttttcatgat agcgagcaat      7920
     gtaatgttac ccctatgact gactcatcgt ctwgcgagaa tgatgaaata aataaagaac      7980
     gtaacagaga agaacaaaag ggtgacgaca acgggcaaga agtaacttgt caaaaagaaa      8040
     cgagtggggg ggggattact gtagtagagc tacctcacgt ggtagtagaa accctatata      8100
     agaaaccaca gcaacaaccg caggmcagtt tgattagagt tgccagacag cagcatcaag      8160
     tcatcgaccg tttagtattt gaagcaaggg gtatcgacca acaacaacct cacaagagaa      8220
     caagtgtggg gacggacaat tttgaagaac tctcattgag aaaaaaggca aaacacaatt      8280
     ttgaggtaaa tgtaaatttg tttccttcat aaccattttt taccttattt attagttttt      8340
     catgaatatt aaaactaatt aaaaattttg tgtttctttg ttacagatgt ctgatctggc      8400
     agctttaaat aaagccgctt ctggaggctt ccttccatgc aagaaaatca ccgagatgat      8460
     agtaaaccac agctatatgg tcacgaaatt aaagaaagtt aacactaaat acggaacgaa      8520
     ggcagttgtg gaactcaatg atgagtttca aatattttta cctagtgcag tgtcaaagaa      8580
     tattgttgat aatgaagcga tgtataataa tttattagac tccatacaga aaatggagct      8640
     ctttataact tataacggtt gtcatattca attttcaagt gtataggtta aatagttttt      8700
     gtggaaataa ccaaaacaac catgtattgt gtttttcttc ataaaaattt tatttaataa      8760
     atcaacttct tcgcagttca aacatttttt tttattttgt ctccatgcgt ttaccacatt      8820
     ttttatacat catattttct acaattacaa ttgatctttt gaagtccaac tattgtgggt      8880
     attatcaaaa cccaaccatt taacgaaaat ttgatttttt cgtcggcgta gaattttctc      8940
     aacaagataa gtattaggat acttggtttt ctgcagttcc tgctcgtaaa agccaccaga      9000
     gattkgctgc tgctgataat cctccaaatg gtaagtgaat ggctttgttg gtgctactcg      9060
     ggttacagta aaaatttctg tcgaccagtt aggtgtataa cctttttcaa agacttgctt      9120
     agtattactc acacgtactt tatcaccaac tttcaatttt gatattgttc cttttttcga      9180
     aaatataaat ttttgtaaaa tatttttttt cattaactac tgaaacatct tttggcttca      9240
     caccaatcgt tcggtgtttt cgattattgt aagaagttat cagctgttgt aaaatattga      9300
     gccacttgta attacccctt acactaaact ttttccacat agcatgcttt agggtacgat      9360
     taaatcgttc acatatagac gccttaagat tactgtacgt ggagtataag ttaattttgt      9420
     aatttttcat gagaccttga aaatttacgt tgtaaaactc tttaccacga tckgtttgca      9480
     aattagttgg aactcttcct tccgttaata tagttttcat agctgcagtc acatctgtac      9540
     cagttttatt ttttacgggc acggcccatg catacttgga aaatacatct atgactgtca      9600
     gcaagtatct gtaaccttta ttttcacgag cataaggtat catctccaca agatcagctt      9660
     gccatgtttc atccaagccc cgaacatcaa actttcggcg gaggtagttg cgtctcgcag      9720
     gtttatgaag ctcttccact actgcttcca tccctcctaa atgtcttctg gagttatatt      9780
     agatatctgg gtcaaaatct ccttaattgt atttatttca cgctgcaaat ttagtattgt      9840
     ttctgagaat acatcactca aattgttgac tagtagactt attttctctt gctcattcaa      9900
     aatgaatctt ttttctttct gtaaagtagt gagatttata gcatcattag gttgaacagc      9960
     tgatgcaaca ttgcacaatc ttttattttc taagtcaaat tgaccatctg aggtgagctt     10020
     atatccgatt ccaggaggac ctcgactacc accttcagac ttagctgatc cacgtccgaa     10080
     tacatcaatg ctcattttaa tactgaagtt aaatttaata agcaagctta atatataata     10140
     ttagcttcac gaagctcctc aacgattgaa tttatttcat tagtatgact aggattacct     10200
     gctgatcttt ctgccactag caatcttagt cgattaacta gttcgttagg gttgtcccag     10260
     taaacatagt ccatttgcgt gtttagttta gcaattttaa atgaaggtat ggacccacct     10320
     tttttcttta catgtgtaag attaaataat ggggcaataa catcattaaa ttttttactg     10380
     ttgtatggac gaatagtctc atttttatca aattttcttt tatgtgcact tgaagtttcc     10440
     aagatttgtt tgtattgagc taaattatct ggtgtcatgt atgctttatc aggatgcttt     10500
     ttaatgagta actccatcaa cccatcagtc attggatatc ttagatgctt tatttgaatt     10560
     tgattatttt tgaaataaat gggtgaatca ccaagtacat attgtccgtt tttttctttt     10620
     cttatcccat aaattcgatc taattctggc ttattttcat caagtatttg taaatatctt     10680
     cttttccatc ttcatcatca ctgttactat tagctgattg aaacattgat gtgtcgatat     10740
     gattttttgg cttaaaaggc ttaaaaggct ctttagatgg aaattcgaag ctttgcggta     10800
     catttttttc cttatttgtt ttatagatga ttttatgaag cggatcagta ataggcttaa     10860
     aagtctcact aatttgtttt tcaaaatttt cttttcctaa ctttaacaat cgatgcttgc     10920
     gtttcacagc ttctctcgct ttttcaattt gttgaagaac gtgtttttcc ttatgaaatg     10980
     catccatgtt tactgcttga tagttaacaa aagactgatg catacttaat gaaaatgagt     11040
     aatatttatt gcgaaagagt caaaacctct tctatatcta ccattattta catctctttc     11100
     cttgtctatt acaacaaatc catgtttccc aactccccaa catttaacac ataacttttt     11160
     gaagtcatta tacgtcatat cggtattaac atgatcatta tagatgtgtt tcaaattcat     11220
     atcatcttgt cgaaatatca ctaagaggtt taaattatct ctgactaaat gctttggaac     11280
     ttgagcataa gattgacaaa gatagaagca gtcaacgttt ttgtgacgcc ccatgcagaa     11340
     aaaggctctc acattatctt gtttttcaca ggcaatgtca tcgaatatca ttatggagtt     11400
     gggtagtgcc ttatctggag atatgactga ttcatgctcg ctaaatgaaa aatattttat     11460
     gccatctata ggatctaata gttcttttag aaacttatac tttggttgat tcaacgattt     11520
     tgagtacaaa taaacattct caaatctcaa tccattggta tgagtaataa gagatagtaa     11580
     gctattggtt tttccacagt ttgatggacc gcaaaaaaca gctcttatag tatcgggtag     11640
     caaatcacca tggcgtttta ttttcttatc ttgttcaacg atacatcaaa attcacgacg     11700
     ggaagtttaa tattctgttc cacgaagctc atgttaactg catgctgact caaccgagac     11760
     taaaagtgat agtgtaatca gcatgttttt aaacatttaa gcctggcgct gctaacctgt     11820
     tttaaacata aaactataaa tagcgtgcta ctgatgttta tgagctcagt taacgttgca     11880
     cactcgagaa gtgatgatca ttcatcgacg aaaaggtcgt ggtgtcataa atacagtcat     11940
     aaacaaactg ccagtagaac tgcacgtgcc aggatatcag tattgcggac cgggcactaa     12000
     actagccaag agattagccc gtggagatcc aggcgttaac ctattggatg aagcttgtaa     12060
     acaacacgat atagcttatt ctcaaaaccc agacgacatt acggctagaa acgaagcaga     12120
     taagattctt tcagaaaagg cttggcaacg ctttaaagcc aaagattcaa gtattggtga     12180
     aaaggctacc gcttttgctg tgagcagtgc aatgaaagtg aaatccaaat taggaatggg     12240
     tttatcaaag aataagaaaa taaaaaaagt aagaaaaaag aagcttggaa aaagtgtgac     12300
     tttgaaaaac ttaattcaaa gtgctaaaac gtctatggtt acaagtaaat gtgctcgcaa     12360
     agttgtaagt tctgctttaa agggagctcg aaaagctttg aaaaaagctg gtggtaagaa     12420
     aaatattaga acaccacgca tattacacat acctcaaaag attggtggtt ttttaccata     12480
     cgtcgtaccc acatttgcag gtctaagcgc tgtaggggct attgctaatg gtgcgagtgg     12540
     tatatataaa gcaataaatc aagcaaacga agccaagaaa cagcttgaag aaagtgcgag     12600
     acacaataaa aaatggaagc tattttactt ggtaaaggcc tcttcctaaa accgcacaga     12660
     aaaggtttag gtctatactt aaaaccagga aggggattaa aaaaaaaaag ttcgaagtaa     12720
     aactgcctaa tcgagctctc acaaataaag atattattga aatatgcaaa aatgttaaag     12780
     ataccacatt ttcgaggagt attcatgaga aacgatatgc catctagtgg tccacatcag     12840
     aatgaatcag ctattgttaa tctagatgat aaagatggtc ctggtactca ttgggttgca     12900
     tacaaaaaac aaggtgatga cgtaacatat tttgatagtt ttggcgatct acaaccaccg     12960
     ctagatttga tgttatacct tcggtgttgg tattattaag tataattacg aacgatatca     13020
     agaatttaat acttataact gtggtcatct ctgtctaaga tttttaaata ataagcttaa     13080
     ctataagcgc ctataagcaa gggatatgaa aaaaatttat catttattga tgaaccgtca     13140
     tgggagacgc attcactttg agtttgtcta gtacatcatc cgttctcgaa gcacaatatt     13200
     ttcctccgat tgagctctca ccgcaaaaaa attacgttct tggtttagtg gaattactca     13260
     catttaattc catacctaat attgacgaga gtaataataa attttacgtg ggtgaagagg     13320
     tggttacttt accaacgggc agctatgaaa ttcaagatat agaaaatttt ctcatcgaca     13380
     tattaacacc tgaagatatt tcaataagtg taaagcccaa caataacacg cttcgtagca     13440
     taattctgtg tagccaccca attgattttc gaccagaaga ctcgttggga tcagttttag     13500
     gttttacaaa acgcatactc acaccgaata aaactcatga gtcagataaa cctgtakcaa     13560
     ttcttaaggt aaatgcactt cgagttgagt gtaacattac tactggagca tatataaatg     13620
     aacgtaaagt tcacacgatt catgaatttt tccctgcagt tcctcctggg tataaaatta     13680
     ttgaagttcc aacacaaata atttacctac ccgttgcagt caagacaata gatcatcttc     13740
     aagttcagat tgttgaccag gaaggaaaat tgataaattt ccgaggagaa gtcataacaa     13800
     taaggctaca cgtgaaacaa ttaaattgaa ggaatgggta ttgtatatgt tgtgaaggaa     13860
     agaaaaaaat ttgaagagga tatataagta aaccaacatg ggaaaggcaa atcagttatc     13920
     aacgagcaac caaagcatta acacgtcaga acgcacagtt tttaaaaagc ctaggcttaa     13980
     aagtgatcgt tggctaaaat ttatttgcat attttcctgt tgttttaaag atggaagaaa     14040
     ttctaaacgt tcagtcaggt gtcacattcg acgaatcaat tgcacactac gaaattcatg     14100
     cacatcagcc ttacatttca tcagcattca acaatagtga tgagatacgc atctcaattc     14160
     aacatcaaga tttatgtctc ttaccctcac aaagcgctat acatattgtc ggacgtatta     14220
     cattaaacaa taatactgca gtcacccgaa ctgagttagt taataatgct atttgtcatt     14280
     tgtttgaaga aattcgctac gaactgaacg ccattgaaat agacaagtgc aaaaatgttg     14340
     gtataacaac tttaatgaaa ggttggatat cacactatcc aggtcaaagt tcaatgctag     14400
     aaaacgcagg atggctagat attgccgaaa caaacaaatt ggtgaatgat gaaggttatt     14460
     ttgatgtttc tataccttta agcatgatac ttggctttgc tgaggactat cgtaaggttg     14520
     tagtaaatgc aaagcatgaa ttaatcctca cgagatcgag aaatgactta aatgcagttg     14580
     tacaaacagc tgctagtgat gtttacgaag actttaaaat tacattgact cgaatagaat     14640
     ggctcatgcc ttacgtaagt gcatcagaca gacttaaaat acgtctgctt aatgtcattg     14700
     caaaagataa gccaatttcc atgagttttc gcaattggga gttgtatgaa tatccccttc     14760
     ttccaacaac tatgaaacat gtttggaccg taaaaacatc aaatcaactg gaaaagccgc     14820
     gatttgttgt tttaggcttt caaacaaatc gtaaaggtca gaaagctgtc aatgctagtc     14880
     gctttgatca ttgtaatata agtaatgtta aattatttct taactctcag tactacccat     14940
     atggcaatct taatctcaat attaatcata atcaattttc tttactctac aatatgtata     15000
     caaattttca aaatgtctat tatggtaaag aaacagaacc tatgattaat aaaaacgatt     15060
     ttattacaca catgccactc atcgttattg actgttcaaa acaaaatgaa gctttgaaaa     15120
     gcgcgccagt tgatgtgcgt ttggaattcg aatcaagaga taattttccg caaggaacag     15180
     ctgcttactg tctgattcta catgatcgta taatcgagta taatcccgtg agtggggatg     15240
     tgagaaaact tgtctaaact tgctcataga aaaataaaac agcattagtc atttaagtta     15300
     gtmtatgcca tgatggagta tgtagtggac atgcaaggct ttaaaaagcc tggcaatgat     15360
     tatgtgttaa aagaattagc gattctttcg ttaagtgagc gcgttgaacc acaagtgttt     15420
     ctttttaaac caccgtttcc ttggcgtaag ttgagtcaaa agtataaacg tgaaaattta     15480
     tggcttgagc tctactatca tggattagat tggaaatctg gtaatattaa ctatacagaa     15540
     gttgggaatg tgctacgaga aaatctcaaa gatgctaaga atatttttgt aattggagaa     15600
     ttgaagaaaa ggtggctcga aaggtttagt tttcaagtta atgatatgac tgattatcca     15660
     gagtttgaac tcccaacatt agcaactaca tgtcctcatc ataatggtgc gtataaatct     15720
     atgtgtgcca cccacaatgt caaacgaatg aaaaaattct attttggagt ggggagatgt     15780
     taaaaactta gtaaaactgt acttttaaaa aaatctgcaa ataaatgtat atttatattt     15840
     gttattattt ataacctttc cctaaaaacc agcgtaagat taaaatatta agaaccaatg     15900
     attaatttta caaaacataa acacacactt gcacagtgtg ggatgtatat aaagaatttc     15960
     agtgcagagt gctgcttagt ttatcacgca gcatcaaacg cgacggatac gcgtttatat     16020
     cgcagttagt acgacgcttt tgagctgcaa aataaaaatg gatttttacg aggattatgt     16080
     tattgagatt ggaggttttc tcgacgcttc tcgacagttt ttaccaaaag aagtggctgt     16140
     ggtgtcgctt atgagaccag cgatcagtca ttggattgtg cggcccccgt gcaatttttc     16200
     caccttacct atggatgtgc gccaaaacaa cgactttcag tcgaagcgag tgcatggact     16260
     tcgctggttc gagggtgatt gttccattag aaagttacag caacatttgt acactgtagc     16320
     aaaaaatgca catcgaattt acgtttatga agataataca gccacttatt tggaatcgac     16380
     catagggtgt gctgtgatta acattcagca gtatatggtg ccatcgcgtc acattcttag     16440
     tacgggatat tcaacaaagg cgttaatgtg tggtactcat gatgtacaaa aaagtctacg     16500
     tagaaagmaa tattgcgcac ttagtaaagc tcatcaaata aaattgtggc tttgctcttt     16560
     ggtggaaagt agcattgaac cagactcaga atgtttttta gacgcgctta atagttataa     16620
     gaagaaaatt tctaaaatgc ctcccagttg ggatactatt gatggaacta atactgatga     16680
     tactgatact gatagtgact ctgaaactga tactaatgtt gatgtcaaaa acgatgtccg     16740
     tgtgtaggca aagaagaaaa aagtaagcat aaaatttaaa atcaaaaaat aaagtatatc     16800
     ttacaattag tgccttctta taaactgatg aaaatttgcg tacagcttca gttatactgt     16860
     gacgattgat caggcaacat caacaacatg ggtccgatct ttagcaaacc aaaatatgag     16920
     agcctcagta aggaggagga gaaagataaa aatatccgaa aacctcttat agaaaagcac     16980
     gttgaggcat ctcaaccaaa agtaaaaaga aattattatt ccgaaaatat ttgctctcat     17040
     ccaaagaaag atggatatga tatattaaaa aaaaaaaatc aataatcagt ccttgccagg     17100
     actatgaaat tttttttgta ttttttgaag ctacaaatat atgtattaaa ttaaatttaa     17160
     attttttgtt attattaaaa tccatttaca ttactacaac cttaaaatta caaatttatt     17220
     agmttgctta tttattggta aggtactaca tctacaaatg agtaagccaa aacaagttat     17280
     tgtcaaaaat atttacattt cttagtgaaa aatatattat cacaagtaaa aaatgttcta     17340
     acagaaaata ttcaactaca caaataatta ctaacacaat taaaaaacac ttttcataac     17400
     actgtactgt ttttakcact ttaaagaatt gctgattttt tatataaaca taattaatca     17460
     cttgagtttc tatcgcttaa aataaaataa ttttgtgctg ctgatgcatt tcattatttc     17520
     atcctgtaag aaaaaaattt attaggataa aagctgtgca gaataaaagt tgtgtaaaat     17580
     ttttattcaa aactttacct gctgttatag atgatgtcac gttttcaata aatgagatcc     17640
     tctcccattg tacgctggaa ctcttgtaaa tttatcgctg tcaaaggaga atatccatgt     17700
     tctccgaaat acaccaacat gtgtacaggt gctcttacgg agtagtatgt gttataactg     17760
     caccaattgt aggtgccagt aaaaacattt gggaactctc gttccaactc acgaatgtca     17820
     tttgtataga tactatagta tctataatga tttggccaaa ctaatacctc agccaccacg     17880
     ttgtatatac ttttatcgaa gggaaacgtt cgccttcgtc gaaaatttaa aacttgtaac     17940
     aaatcctcat tgattgcggg aacaaccgca ctttcaatga ctggctcaag agagtcttct     18000
     ggagtttgag gctcctctac ttctttgatt ggaagcattt cgtcaactga aaatcgttct     18060
     ccaagacgca ttcgaatttt ttatttttcc cattcatagt catatgtttg ggatgttatc     18120
     agctgttaga ctgttgaacc attcataaat acaattcaaa gaacaaaaca agccaaagtc     18180
     ctttgaggca gtcttattta gagaagtatt gcttacatct gtggggtcta atttgtgata     18240
     acagagtgtt ctactataac gtctataggg ctttgcagta aagtgcatga ttcaactaaa     18300
     cgcttactcg ttctatctca ttgatgtcta catatatgat gactcggaaa atattagcac     18360
     gcgcgagtac ttatacatgc acatgtgtac attttcatgc atgcgtgtag tggtcaaagg     18420
     gggggggata agctcgtgca atagcacggc tgacccaaca cacgtacaca tacgtcacac     18480
     aggggccttc tcacaagtgt ccgcccgccc ccctccactc ggagcggcga cagctcagag     18540
     ccacccactt ggaggggggg agccccatac cctcgcgcta cagctccccc ctgccaccct     18600
     aggggggagg tgagccagaa ccctcacagt atacctact                            18639
//
ID   Polinton-6_NVi repbase;    DNA;    INV; 10272 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-6_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-10272
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 796-796 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus may be incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(204..830,749..1903)
FT                 /product="Polinton-6_NVi_1p"
FT                 /translation="MLMFVERGIRGGISQCCNRYAKANNPYMKEGYDANAD
FT                 EKYLMYYDANNLYGWAMTEALPYGKFKWVTNLETPNFFNVPDDGPKGYILE
FT                 VDLEYPITLHGAHRDMPFCAEHMCPPGLKQKKLMTTLHDKKNYVIHYRALK
FT                 QALAHGLRLKKIHRALEFEQSKWLKPYIDLNSAKRTAAKNEFEKCFSNYLI
FT                 TLFMEKLWRTRESTSRSSWKMLFKLFNNAVYGKTMENERKHVEIKLVTKWE
FT                 GRYGAEALIAKPTFHNCTIFDENLVAVQMFRAEVCIKKPIYIGLSVLDLSK
FT                 TLIYRFHYDYMLERAGDKCKLLYTDTDSLVYEVSNLNMYEIMRTDIHEFDT
FT                 SDYAENNQFDMPRVNKKIVGLMKDECNGDILLEFVGLRSKMYAMLVQNQKP
FT                 IKKAKGVKSSVVKATIEFDDYITCLQENTILTREQRNIRTRQHKLFTEKEV
FT                 KIALSARDDKRFLQKGKTDTLPWGHYSIIVDEQPTAAVLSSREEEEAIAVA
FT                 GPSREGEKQQLSWLESQSLSPPQSSRRYSKREKQSWWGSAYMSGIPGARSS
FT                 YCLLKSQRKDLFINHRRRRKERATTIPRRKNNSAKVSSIKRAHIHL*"
FT   CDS           join(7888..9123,9065..9634)
FT                 /product="Polinton-6_NVi_4p"
FT                 /translation="MDEILSIQSPVSFDESLAHYELHAHQPYTVSSYNNSD
FT                 EIRIAIQHQDLSLLPSRSSLHVCGKLTKPNGTALARTKLVNNAICHMFEEI
FT                 RYEINAVEIDKCKNVGLTTVMKGWISHNPSQSLIMENAGWLDIAETKSLTN
FT                 ASGYFDVNIPLSMIFGFAEDYRKIVVNVKHELVLTRSRNDLNAIIQTATLA
FT                 DGVATFEEYKLELTKIEWLMPYVVASNTNKIRLLNYIEKNRPISMSFRSWE
FT                 LYEYPVLPTSTKNVWTVKTSNQLEKPRFVILGFQTNRKNQQAENASQFDHC
FT                 DISNVKLFLNSQYYPYGNLNLDINRYQYAVLYDMFANFQSLYYDKVSEPVV
FT                 NKNDFISRLPLIVIDCSKQNESLKSAPVDVRLEFESRDNFPAGTSAYCLIL
FT                 HDRIVQYNPVSGDIKTLISYTIASFSIILSAVISRRSYKMEYAVDMQGFKK
FT                 PGKDFVLKELAILPLEEDAEPVVLLFKEPFPWCKLSQKYKRENLWLELYHH
FT                 GLSWDSGDHEYTEIGNLLRDALKDASKIFAIGDVRKKWLERFNFKVTDITD
FT                 CGYPATDHPKLVTICTNHNGAHKATCARQNVRLMRRYYFDNVFMEWDDISS
FT                 DEA*"
FT   CDS           join(4919..3981,3977..3543,3565..2633)
FT                 /product="Polinton-6_NVi_2p"
FT                 /translation="MSDFHQEKNVLHQLVKARNAVKRKYSLLKFGKDNFEK
FT                 AVEETFRPIVDPLQKLVESENKKSITAATSPVDNSHKNPFKRKVKKIKSER
FT                 PIDDDDETYKFDEDNESYWANSTMQDDGAETAYDTADSENETSISKPSLPF
FT                 LNQANLDKIYGLRKENENYMLGNSIVKFEDKKIVVDNVEYPKTAGLMDLIA
FT                 YRNPDKKIVSSDDMKNYRSILEATSVHKKKLNPKADIRSSNSKKYTDFIAP
FT                 LFFGKREKEGGALPRYKIARMNTRMDYVYWDDPNELVDRLRLLIAEQSAGN
FT                 PSHVNEIHSIIEELREGGYIRALPVNXIIKMSVDVFGRNLKKNEGDRGPPG
FT                 FGFKITKDGQYDLDNKRLCNVAAPHKLNEAVDLGTLHTIHQMEHKKVRDVT
FT                 DKLREELKDLDSLIEAHRDEMDRQVLELQADVKAIKDALKEMAEANAISAF
FT                 KATTLEKTADNGAKKLLIMEHERLVEELHKPARRNYPRRKFVMRGLDETWQ
FT                 ADLVEMLPYSKENKGYNYLLTVIDIFSKYAWAVPVKKKTGKEVAAAMKSLL
FT                 SQGRVPKNLHTDRGKEFYNSDFKNLMQKHKINLYSTYSKMKASICERFNRT
FT                 LKSAMWKKFSLRGNYKWLDILPGLLATYNGSKHRTIGMKPKDVSRTNEADV
FT                 LKRFTDKVKPVKKPKFKVGDKVRVSNAKQVFEKGYTPNWSTEIFTITKVAA
FT                 TKPTTYHLKDYQDQPISGCFYEQEILKAKYPDVYLVEKVLKRKGNXIFVKW
FT                 LGFDSTHNSWINKTDNV*"
FT   CDS           join(5767..6558,6562..6963,6989..7696)
FT                 /product="Polinton-6_NVi_3p"
FT                 /translation="MIVHRRQRRGRGFVNKIINKLPVELHLPGYQYCGPGT
FT                 KLAKRLARGDPGINQLDVACKEHDIAYSQNRDNDEARTIADKILADKASKR
FT                 ASSKDASIGEKIAAFAVSKTMKLKTKLGMGAKRKRRTKKSLRLNKIVKAAA
FT                 KSMIPTNNARKAILSALKGARDAVKKAGGKHKVLVPRVLPVPSKVGGFLPL
FT                 LIPIFAGLSAAGALAGGAAGIAKAVNDSKAAKLQLEETSRHNRKMEELSIG
FT                 QGLYLKPHKTGMGLRIAHGKTLIKKKTSLKLRLPGRPLTDSDLVKYAKILK
FT                 IPHFRGVFMRNDLPXNGPRYNESAVVNLDDASGPGTHWVAYRKRGKSVVYF
FT                 DSFGNLQPPTDLMXYLNVNGVKYNPDRYQDYNSFNCGHLCLKFLSNKLNTP
FT                 RRTILILNSTVMENSLTLTLSGSSSILEAQYFPPIELSPHKQYVLGLVELL
FT                 TFNSIPNIDKGNNKFYVGKEEIVLPTGSYKIQDIDSXLREILTKKKISISI
FT                 QPNNNTLRSIIKCNRKIDFRPQDSIGALLGFTQRVLQENXKHSSDLPVAIL
FT                 KVNALRIECNITSGAYINGQLAHTIHEFFPAVPPGYKIIEVPSQVIYLPIT
FT                 VKSIDHLQIRIVDQDGHLVNFRNETITIRLHLKPT*"
XX
SQ   Sequence 10272 BP; 3074 A; 2166 C; 2112 G; 2890 T; 30 other;
     ttgagaattt tagaagtaat tgtctgcatg catatggttt agatccagct cactactaca        60
     ctacgccagg tctgtcatgg gacgctatgc tgaaatatac acaggtgaat ataactaaga       120
     taatctaaag ctatgaaaat gggcaaaata tttatattat taattatttc taggttcgat       180
     tggatctctt gacggacatt gacatgctca tgtttgtcga gcgtggaata cgaggaggaa       240
     tcagccagtg ttgtaaccgg tacgcgaaag ctaacaatcc atacatgaag gaaggttacg       300
     atgctaatgc tgatgaaaag tacctcatgt actatgatgc caacaacctg tacggctggg       360
     caatgaccga ggcgttaccc tatggaaaat tcaagtgggt aactaatctc gagacgccca       420
     acttcttcaa cgttcccgac gacggcccga aaggatatat tctcgaagtg gatctcgagt       480
     atccgataac gcttcacgga gctcatcgag atatgccctt ctgcgccgag cacatgtgtc       540
     caccgggttt gaagcagaag aaattgatga cgacacttca cgacaagaag aattatgtca       600
     ttcattacag agcattgaaa caagctctgg cacacggact tcgtctgaag aaaattcatc       660
     gcgctctgga attcgagcag agcaaatggt tgaagccgta catagactta aacagtgcca       720
     agcgaacagc cgccaagaat gagtttgaaa aatgcttttc aaactattta ataacgctgt       780
     ttatggaaaa actatggaga acgagagaaa gcacgtcgag atcaagttgg tgacaaagtg       840
     ggaaggaaga tacggtgccg aagctctcat agcgaagcca actttccata attgcaccat       900
     cttcgacgaa aatcttgtgg cagtgcagat gttccgtgcc gaagtttgca ttaagaagcc       960
     gatatatatt ggactgagcg ttttggactt gtccaagact ctgatatatc gctttcatta      1020
     tgattacatg ctcgaacgtg ctggtgacaa gtgcaagctt ctgtataccg atacagatag      1080
     cttggtctac gaagtgtcaa atctcaacat gtacgaaata atgcgcacag acatacatga      1140
     gtttgacact tcggactacg ccgagaacaa tcagtttgac atgcctcgcg tcaacaaaaa      1200
     gatagtgggt ctgatgaagg acgagtgcaa cggcgacatt ttgctagaat ttgttggact      1260
     tcgaagcaaa atgtatgcca tgctagtcca gaatcagaag cccatcaaga aagcgaaggg      1320
     tgtcaagagc tcggtagtca aggccaccat cgagttcgac gactacatca cgtgcctgca      1380
     agaaaacacg atactaactc gagagcagcg gaacattcgg acgagacagc acaagctctt      1440
     caccgagaag gaagtgaaga tagctttgag tgctcgagac gacaagcgtt ttctccagaa      1500
     aggtaaaacg gatacgctac cctggggtca ctacagcatc atcgtggacg agcagccaac      1560
     cgcagcagtt ctatcatcga gagaggagga agaagcaatc gctgttgcag gaccgtcaag      1620
     agaaggggag aagcagcagt tgagctggct agagagccaa tcactgtcgc cgccgcaatc      1680
     gagccgccga tattcgaaga gggagaagca gagctggtgg ggatcggcct atatgagtgg      1740
     gatccctgga gccaggagct catactgtct cctgaagagc caacggaagg atctattcat      1800
     caatcaccgc cgacgaagaa aagaaagagc aacgacgatc cccagaagaa aaaataactc      1860
     tgcaaaggta agtagcataa aacgtgcaca cattcaccta taatatatac ataattatta      1920
     ataagaattg ttaactttgt gtgttacaga tggatatgga aaatctaaac cgcatcgcta      1980
     agggaggatt ccttcctaca aagaagctgt ccgagctgga aaaggatcaa atgtacatgg      2040
     tcacagtctt gaaggaggtc aagaccaagt tcgggtctaa gatcgtggca gagctgaaca      2100
     gagagttcga catcttcctc ccgaagaagg tctccgacac cttcctggca gacgagagct      2160
     tctatgagaa catgcaggat gcggccaaca agctcgaact gttcgtgaca taccgtggcg      2220
     gatacgtagt cgagttttcc agcaaatgaa tgcgtcgtga agtggttgaa ctagtctgga      2280
     aytgtatgaa cgagaacgag ctrggaataa attgtttwca ctcgtagtga ctagtttagt      2340
     ctgcgcattt acaaatagtt ttaagttagt ttgtaaaatc gtcatcgtgc tacatagacg      2400
     agtgtgcttt tagtcagtga tagtttttaa gaatgtcgaa ttgtaagaca aagtgtgcgc      2460
     gtgtgtgtac ctgtgtctgc gtgtgcgtat gtgcgtgttt ttgcttgtat ataataagtt      2520
     agtaataagt atgtatctag gcgcgcggca gttataaata aataaataat tttttttgtt      2580
     cacttaaaat ttgatcttat tattaaaaaa aacacaatca ttaatacatt tattatacat      2640
     tatcagtttt attgatccag ctattatgag tgctgtcaaa acccagccat tttacaaata      2700
     tttkatttcc ttttctcttc aaaacttttt caactagata tacatccgga tatttagctt      2760
     ttaatatttc ttgctcgtag aagcatccag agattggctg atcttgatag tcctttagat      2820
     gatacgtcgt tggtttagta gcagctactt tggtgatcgt gaaaatctca gttgaccagt      2880
     ttggagtata tcctttttca aatacttgtt tcgcattgct cactcgtact ttgtcaccga      2940
     ctttgaactt tggcttcttc acaggtttaa ctttgtcagt aaaacgtttc aacacatcrg      3000
     cttcgttagt acgcgataca tctttaggct tcataccaat agttcgatgt ttgcttccat      3060
     tataagttgc taataaacca ggtaaaatgt ccaaccattt gtagttgccg cgtaagctga      3120
     attttttcca cattgcggat ttcagagtgc ggttgaaacg ttcgcaaatt gaagctttca      3180
     ttttgctata cgtcgagtac agattgatct tatgcttttg cataagattt ttaaaatcag      3240
     aattgtagaa ttctttgcct ctgtckgtgt gtaagttttt tggtactcga ccttgactca      3300
     acaacgactt catcgccgca gcaacttctt ttccagtttt tttcttcaca gggacagccc      3360
     aggcatactt cgaaaatata tctatcacag tgagcaagta attatagcct ttgttctcct      3420
     tggagtaagg tagcatttct accaaatcag cctgccaagt ttcatccaat cctcgcatga      3480
     caaactttcg acgaggatag ttacgacgag caggcttgtg aagttcttct acaagtcttt      3540
     catgctccat tatcagcagt tttttctaat gttgtcgctt tgaaggcaga tatagcatta      3600
     gcttcggcca tctctttgag agcgtctttt atagctttca catctgcttg tagttctaaa      3660
     acttgccgat ccatttcatc tctgtgtgct tcaattagag aatccaaatc cttcaattcc      3720
     tctctcaatt tatccgtgac gtctcgcacc tttttatgtt ccatttggtg tatagtatgg      3780
     agcgtaccca agtcgacagc ttcgttgagt ttatgaggcg ctgctacatt gcatagtctc      3840
     ttgttatcca agtcatactg tccatctttt gtaattttga aaccaaaacc aggagggcca      3900
     cggtccccct cgttcttttt caaattacgt ccgaacacgt cgacgctcat tttgataatg      3960
     ycgtttacgg gcaatgctca gcgtatataa ccaccttcgc gaagttcttc tatgatcgag      4020
     tgaatctcgt ttacgtgact gggattgcca gccgattgtt cagcgataag caaacgtaga      4080
     cggtcgacca gttcatttgg atcgtcccaa tatacgtaat ccatacgcgt gttcattcta      4140
     gcaattttgt atcgaggcag tgctccacct tccttttctc tctttccgaa gaaaagaggg      4200
     gcgatgaagt cygtatattt tttgctattt gaagatcgaa tatctgcctt agggttgagc      4260
     ttctttttgt gaacactcgt tgcttctaaa atgctgcgat aatttttcat atcatcagaa      4320
     ctgacgattt ttttgtcagg atttctgtaa gcgatcaagt ccatcaaccc agcagttttc      4380
     ggatactcaa cattgtcgac tactatcttc ttatcttcga actttactat tgagtttccg      4440
     agcatgtagt tttcattctc cttgcgtaat ccatatattt tgtccaaatt cgcctgatta      4500
     agaaaaggta aactgggttt actaatcgat gtttcattct cactatcagc tgtatcataa      4560
     gctgtctcag ctccgtcatc ttgcatagta gaattcgccc aataagattc attatcctcg      4620
     tcaaatttgt aagtctcatc atcatcgtca atgggtcgct cagatttgat cttttttact      4680
     tttcgtttga aaggattttt atgcgagttg tctactggtg atgtagcagc agtgatagat      4740
     ttcttatttt ccgattcaac tagtttttga agtggatcaa cgattggtct aaaagtttct      4800
     tcaacggctt tctcaaaatt atcctttcca aatttcaata agctgtattt gcgcttgaca      4860
     gcgtttcgcg ctttgaccag ctgatgaagt acgtttttct cttgatgaaa atcagacatg      4920
     ctagcacttt ggcattcaat gtcagactaa gtatacagta ctaagcacga gctatattta      4980
     tagcaaactg atcgaacccc tttcgatatc ttccagcatt gattggacta tctttgtcaa      5040
     tcatgagaaa tccatgattt acatctgacc aacattgcgc gcataaatcc ttgaagcgtg      5100
     cgtatgtcat gtcagaattt acatgatcgt cgtataagtg ctttaaattc acatcatctt      5160
     gtcgaaatac taccaacaaa ttgacgttat ctctcacaag atgtttaggc acttgcgcrt      5220
     atgactgrca aagatagaag cagtcaacyt ttttatgcct acccatrcaa aagaatgctc      5280
     tgacgttatt ctgcttttca caagctatat cgtcgaatat catwattgaa ttrggaagtg      5340
     cgctatctgg tgctataact tcttcgtgtt cactgaaagg aaaatacttt atacccttga      5400
     gaggctccaa tagttgtttt aaaaatktat actttggctg attaagcgac ttggagtaca      5460
     cgtatacatt ttcaaatcta acaccgttgg gattagttat gagcgctagc aagctgttag      5520
     tcttgccgca attcgacggc ccgcaaaaaa ccgcccttat gctatcaggc aatagatcac      5580
     catgccgctt aactttttta tctcgctcaa cgacggaatc gaagttcggt accgggagct      5640
     tgataggctg ttccttaaaa ttcatgcttt gaactgttcg gatgctcgac atctactagt      5700
     cgctcaggta taaatagagc gcttatatac tctcgccatc agttaatcat aaaccttcag      5760
     aggggaatga tcgtacacag acgacaacga cgtggtcgtg ggttcgtaaa taaaattatc      5820
     aacaagcttc cggtggaact tcacttgcca ggatatcaat actgcggtcc aggtactaag      5880
     ttagcgaaac gtttagcacg aggagatcca ggaattaatc aacttgacgt agcctgcaaa      5940
     gagcacgata ttgcatattc gcagaatcgt gataacgacg aggcaagaac cattgctgat      6000
     aaaattttag ctgacaaagc ttcaaaaaga gcttcttcga aagacgctag tatcggtgag      6060
     aaaatagctg cttttgctgt ttcaaaaacc atgaagttaa agacaaaact cggaatgggt      6120
     gcgaagagaa aaagaagaac taagaaaagc ttacgattga ataaaatcgt aaaagctgct      6180
     gccaagtcta tgataccaac caataacgct cgcaaagcca ttctttctgc attgaaaggc      6240
     gctcgcgatg cggttaagaa agccggtggc aagcataagg tactggttcc acgcgtttta      6300
     cccgtaccgt ccaaagtagg tggattcttg ccattactca tacctatttt cgctggattg      6360
     agcgctgctg gcgcactggc aggaggagct gcaggtatcg cgaaagcggt caacgactcc      6420
     aaagcagcta agttacagtt ggaagaaact tcgagacata atagaaarat ggaggaattg      6480
     agtatcggtc aaggacttta tctgaaacct cacaaaacgg gaatgggtct tcgcatagcg      6540
     catggcaaga cattgattta aaaaaaaaaa acgtcactca aactaagatt accagggaga      6600
     ccgctcactg actccgacct cgtgaagtat gccaaaattt taaaaatacc tcattttcgc      6660
     ggtgtattca tgagaaacga tttgcctgyt aatggtcctc gttacaacga atcagctgtc      6720
     gtaaacttgg atgatgctag tgggcctgga acgcactggg tggcatatcg taaacgagga      6780
     aaatcagtag tttatttcga tagttttggc aatcttcagc cgcctacaga cttaatgatr      6840
     tacttgaacg tgaacggagt caagtacaac ccagacagat atcaagacta taattcattt      6900
     aactgcggtc atctctgcct taaatttttg agcaacaagc tcaatactcc tcgtcgaact      6960
     atataaagat gcaaaaagtc tgagttgact cattctcaat tcaacagtca tggagaattc      7020
     acttactctg actctttctg gcagttcatc catactcgaa gctcagtatt ttccacccat      7080
     tgaattatca ccgcataaac aatacgttct tggattagtt gaacttttaa cttttaattc      7140
     gatacccaat atcgataaag gaaataataa attttacgtt ggtaaggagg aaatcgtctt      7200
     acctactggt agttacaaga ttcaagatat cgatagtyat cttcgtgaaa ttttgactaa      7260
     aaagaagatt tcgatcagca tacaacctaa caacaatacg ctccggagta ttataaagtg      7320
     caatcgyaag attgattttc gaccgcaaga ctcgattggt gcattactcg gcttcactca      7380
     acgcgttctg caagaaaacw tgaagcattc ttctgacttg ccagttgcta ttcttaaagt      7440
     gaatgctctg cgaatcgagt gcaacatcac tagcggtgcc tacataaayg gacaattagc      7500
     gcatactatt cacgaatttt ttcccgctgt gccgccagga tataagatca tcgaagtccc      7560
     gtcgcaagtc atttaccttc caatcaccgt caagagcata gatcacttac aaattcgcat      7620
     agtcgatcaa gacggacatc ttgtaaattt tcgaaacgaa actattacta tccgattgca      7680
     tctaaaacca acgtaatggg aatagtttat aatagcaaag tcggtagagg ctatataagc      7740
     aaaccgacrt gtcgttcagt tatcagtcgt cggcgaaacg ccaaagygct aacacggcaa      7800
     aacatacagt tcctaaaaag cctaaatttg cgagtcatcg ctcctggtgg aaaataaatt      7860
     gcatactatt ctgctgtttg acaaaaaatg gacgagattc taagcataca gtcaccagta      7920
     agctttgatg agtcgttagc acactatgag ctgcacgctc atcaacccta cacggtctca      7980
     tcttacaaca acagcgacga aattcgcatc gccattcaac atcaagattt gagccttttr      8040
     ccatcacgta gttcgctgca cgtttgcggt aaattaacta aaccaaatgg cactgctcta      8100
     gcacgtacta agctagtaaa caatgctatc tgtcacatgt tcgaagagat cagatatgaa      8160
     attaatgctg tagaaatcga caagtgtaaa aatgtcggtt tgaccacagt catgaaaggc      8220
     tggatttcac acaatcccag tcaaagttta ataatggaaa atgcaggctg gttagacatt      8280
     gcagagacta aatcactgac caatgcctcc ggctacttcg acgtgaacat accgctgagt      8340
     atgatattcg ggtttgccga agattacaga aagatcgtag tcaacgtgaa acacgagctt      8400
     gtactaacga ggtcgcgaaa cgatttgaat gcaattattc agacggcgac tcttgcggat      8460
     ggtgtcgcta ccttcgagga atataaatta gaattgacaa aaattgaatg gctcatgccg      8520
     tacgtcgtag catccaacac taataaaatt cgacttctaa attacataga aaagaatcgt      8580
     ccgattagta tgagtttccg cagttgggag ttatacgagt acccggttct tccaacctcg      8640
     actaaaaatg tgtggactgt caagacttcc aatcagttgg aaaaaccacg cttcgtaatc      8700
     ttaggatttc aaacaaatcg taagaatcag caagctgaga atgccagtca attcgaccat      8760
     tgcgatataa gcaacgtgaa gcttttccta aactcgcagt actatccata cggcaactta      8820
     aatttggaca tcaaccgtta tcaatatgcc gtattgtacg atatgttcgc gaatttccag      8880
     agcctctact acgacaaagt ttcagagcct gtcgtaaata agaacgattt tatttcacgc      8940
     ttaccactca tagtaatcga ctgctcgaag cagaacgagt ccttgaaaag tgctccagtc      9000
     gacgttcgtc ttgaatttga atctcgagac aactttccag ctggaacttc agcttactgc      9060
     ttgatcttac acgatcgcat cgttcagtat aatcctgtca gcggtgatat caagacgctc      9120
     atataagatg gagtacgcag tggacatgca gggcttcaag aaacccggaa aagacttcgt      9180
     cttgaaggag ctggccatac tacccctcga ggaagacgct gaacctgttg tacttttatt      9240
     caaagaacca tttccttggt gcaagttatc tcagaagtac aagcgtgaaa atttatggct      9300
     tgaactttat catcacggat tgagctggga ctccggtgat cacgaataca ctgaaatagg      9360
     aaatcttctt cgagatgcac tcaaggacgc cagcaagatt ttcgccattg gtgatgtacg      9420
     aaagaagtgg ctcgaacgat tcaactttaa agtcaccgac atcactgatt gcggctatcc      9480
     agccaccgat catccaaaac tagtcaccat atgcacgaat cataatggag cgcacaaagc      9540
     cacctgtgca cgacagaacg tcagactcat gaggcgttac tacttcgata acgtgttcat      9600
     ggagtgggat gacatctcgt ccgatgaagc ataaatactc gcgcaatcgc tcattcgagt      9660
     catttcatca aaatgagttc aaaccgaagc agctccggct acacgaggct cccaaatgac      9720
     gacgacgacg ataaaacaaa aaaagattcc tcggcatcat cctcctcctc ctcctctaaa      9780
     ttgaaagagt attcgcaaaa gtattctaca aatacgaatt ctctgcctga acaaaatggc      9840
     tacaaaagat tcaagtagcg cgctaaaaag tcacaatggg tgagtcgcta aggcgacagg      9900
     ctcgagatcg aaaaatcccg agttcaaatc cccgtgactt catttttttt ttcwacttac      9960
     caaaataata taatttaaaa atrtatgaat tagagtcact gaaaaatcat tagtagtagt     10020
     agtagtagta gataagctta tattngtgat tyatacttaa cttaataaca atttctgatg     10080
     ggtaagtcgg taagatgctc ggctggcaac ccaaaggttc ccggttcgaa tccccgcaaa     10140
     accgaaattt ttttcttact tcgcagtgaa ttagraacga attttgtgaa gtaaagtagt     10200
     attaccatga agtgatatca ccatgaagtg gtatcaccat gaagtggtat caccatagct     10260
     tatctactgc ca                                                         10272
//
ID   Polinton-7_NVi repbase;    DNA;    INV; 8494 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-7_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8494
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 797-797 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           1135..2814
FT                 /product="Polinton-7_NVi_1p"
FT                 /translation="MASIDFFERLVQXLRDTLQNVDQMSNNDIHYWLDMCN
FT                 STIKELNEKIXKSNLTRGEKQKCQTCLTHLSCMQVEFEQHLHRGGSLQAEE
FT                 TEARVEWRDVQSAFQNRIRTGVVVNIKHVDILSFLNDAQKLFKVKTKXCLX
FT                 EYNAVKINSDFIAEFSMQKNGEETTDIKYFTSESATVYLSTDLEEWFKDNI
FT                 KEPILSQLEEFQEKDSGWTLKSIISLCINMKKYSPIKGSSYIPLPKFIEKK
FT                 KACVNVXNNDNQCFKYAILSALYPSKSNANRVNQYRLHENELNFGDIEFPV
FT                 KLKNIPKFEKLNNISVNVYMLRKYGPKFEVSPCHITSEKKEKHVNLLIIQD
FT                 FYIDEHEENNRADDGILPKYHYVWIKSMSRLLSSQLSKTHIKSYHCERCLQ
FT                 IFYSEERLEIHENDCKNLNNCRINLPDSKNNILKFEDYSKSEKVPFVIYAD
FT                 FECLLKPTENENAFQLHEAYSIGYYIKCSFDDSLSGYRSYRRKNEEEETAA
FT                 AWFVQELKSIGEKIDVLYKNPKPMRLTDLEEISFRRSTTCHICRKPIXGEE
FT                 LAVRDHCHLTGR*"
FT   CDS           3014..5347
FT                 /product="Polinton-7_NVi_2p"
FT                 /translation="MKGRVTLIPHNKEKYISFTKYIDDCDISFRFIDSWRF
FT                 LPSSLEKLASYLENVPIAVKEFRSDGFTDEKIDLLRRKGVFPYDFVNGLDK
FT                 LTTTKLPEKNDFYNKLTDSHIAEEDYKHAVQVWDKFNISTLGEYSDLYLKT
FT                 DVLLLADVFESFRETSLKAYDLCPAHFYTTPGLTFSAALKMTKVELELLTD
FT                 IDMLMFIESGIRGGISQCCNRYAKANNPYMGSSYDKDQKTKTLLYFDINNL
FT                 YGWAMVQPLPVGKFKWIEYETNPSFFNTPPDSDIGYFAEVDLEYPEEIHDD
FT                 HRDLPFCAEHLAPPGSKQKKLLTTLNDKKRYVIHYRALKQVLDNGLRLKKV
FT                 HRILSFEQRAWLKPYVEFNTEKRKQAKNEFEKLFYKLLINAVYGKCIERER
FT                 KRVDVRLVNKFTGRYGAEARIALPNFHSCAIFDENLVAIQLKRTSITIKKP
FT                 IYVGLSILDLSKTLVYDFHYSYMKKRVGEKCKLLYTDTDSLIYEVEDVDMY
FT                 QVMKEDIHKFDTSDYDENNQFGIPRVNKKVPGLMKDECCGKIMTEFIGLRS
FT                 KMYSILIDGAETVKKAKGIKSSVVKKSITFEDYRKCLQDLVIIKREQCNIR
FT                 SKLHIVHTEKQEKIALSPHDDKRFLLPHSTDTLPWGHYRIMEEQMAQAAMQ
FT                 VEGDAEEGIVVEERGNNDEGRKREGESERGHEATNENASRVGMTLYGDEGE
FT                 QIRIEYDVLEEFMHEWDPSLDRIGSEQEERRDILLEAMEGAEIVVGNGLYE
FT                 RTQHDEEHIREIEANNQPCAKRPRLT*"
FT   CDS           join(8035..7235,7320..6799,6827..5901)
FT                 /product="Polinton-7_NVi_3p"
FT                 /translation="MKSESPLQQPSNHILDKNSSKKMKKRIRIDRSSLLND
FT                 QNNNKTSLLDYTVYDYDDDDDDDAFDTITNSTFRSASGKNESAEDFLSLLD
FT                 KSRRTIDNIYGVRKVDGVYMIGDSEIEFDDKYVKVRNESYPKTNGLMELLF
FT                 KKYPDDLLLSSADRENYRKILEATNAHRKKFSKDESIRMSRSNKYKNILAP
FT                 MFRSTPRKKNNSSGGGLIPKYKIAKKNSSIDLVYWDDPNELIERLRLLIAE
FT                 RSAGNNNHTNEIQSIIEELREAGHIYLPNDLLEITITPMKSSQLLKNYVKL
FT                 DIYIDTHNFLICISSTMSLDVFGRKLEGSQQVSRGPPGIGFNFTSDGDFDL
FT                 EXKRLCNLGEPRXPNDAITLHSLKVILQTEXNYIASKLXGIGEVIEEYKQQ
FT                 VEKHQLEVNAKLKYLYXTTQRNYSGVDYIIEELNNFIIKEDGTSKSSSKKM
FT                 ERQRVAEELHKPARRRYKRRKYDIRGIDETWQADLVEMIPYSKENKGFHYL
FT                 LTVIDIFSKYAWAVPVKSKSGNDVTAAMKSILKEGRVPKNLQTDQGKEFYN
FT                 SIFQKLMKKHNIHLYSSHSNLHASICERFNRTLKNAMWLEFSKQGSYKWLD
FT                 ILPNLLKAYNSRKHRTTGIEPENVTQANEREVKRRFPNEKSPVKKPKFKVG
FT                 DKVRISRIKNVFEKGYTPNWSTEIFTITRVVKTDPVTYHLKDYYDKPVSGG
FT                 FYETEIHKTMYPEIYLVEKVLKKSGKRVYVKWLGFSDEHNSWINKNEIV*"
XX
SQ   Sequence 8494 BP; 2760 A; 1382 C; 1478 G; 2801 T; 73 other;
     atttccarta taarcatgta catttattat tttaaatatc aatttcatct agaccaaatg        60
     takcwtctaa ataatttagc agccaagctc gtattgaaat aacattgtga acagcacaca       120
     taggttttct tcttatgcag agatcatgat traagcagaa gtactggttw tcacttatta       180
     tttcttcaag aggtggacat ccaaagtctt caacatttga aattgatctg aaaaaaataa       240
     gaaaanaatt aaararaagt ttcaaatagt ttyaaaataa ttaacttaca trtttggcaa       300
     wawatttttt atccattggg ctttctgctc tccttttayr aatatttttt ctactccttg       360
     cgtrcagatt tgtaaaattt katgaagacg gtgatatgga atatctccag arttccaygc       420
     tattccatga tgactctttt cwakccattg agtcatacat ttttcttcyt cagtyagttc       480
     ttcccatgcc attggaggtt tgaaragata wgcrgtcggt aaagcagttt tcctcaaatt       540
     gaggaaactr atttctttga aaataaaagt atcttctgcg attctttgaa atccttgaat       600
     gtcgcaaata taaacatttt cttcttgaca ttgcaatata gtatttttaa acaacaaatc       660
     gtagtcacgt gttctatcca tcttgcarct ttgtagacag ttcagtaaga agtgatctcg       720
     cnagattcta rcatcctggt tttataatam gaaactccgc ctytcrctct tcyaggattg       780
     gatgaaaatg caagccctca tttgttgggt gaaaagacga tttttggttg gttsaaaagg       840
     aagaaaattc atcccttctc tagaaaattt tcctcctctt agtctcataa tcttctagga       900
     ttggatgatg gaaaaaatgt gtagccctta ttggaagaaa attcatctct tcccgagaaa       960
     atctttctcc tctctcctca gcagcgagat cttccacctc tccttatgat gattttagct      1020
     ttaaaagaga gaaatttctc ttrgacgagc acagttcatc tgtcgcagtt ascaaaaaaa      1080
     atttagtctt atttttgtgc aagattacta gtgataytct agtgaaaagt aaaaatggct      1140
     tcgattgatt tttttgaacg tcttgttcaa ktacttcgtg acactttaca aaatgtagat      1200
     caaatgagca ataatgatat tcattattgg ctagacatgt gtaattctac tataaaggaa      1260
     ttaaacgaaa aaattgmtaa atccaatctt acgagaggag aaaaacagaa atgtcaaact      1320
     tgtttgacac atctttcatg tatgcaagtt gaatttgaac aacatcttca tcgaggaggt      1380
     agtctacaag ctgaagaaac wgaagctaga gttgagtggc gwgatgtgca rtcagcttty      1440
     caaaatcgaa ttagractgg tgtggttgtk aatataaaac atgtggacat tttaagtttt      1500
     ttraatgatg cacaaaagct cttcaaagtt aagacaaaar catgyttara agaatataat      1560
     gctgtgaaaa taaattctga ctttattgca gaattttcta tgcagaaaaa tggagaagaa      1620
     acgacagaya ttaaatattt tacaagtgaa agtgctacag tatacttgtc aacagattta      1680
     gargaatggt ttaaagataa tatcaaagag cctattcttt cacagttaga agaatttcag      1740
     gaaaaggatt ctggctggac tctgaagagt attataagtt tgtgtataaa tatgaaaaaa      1800
     tattctccaa tcaagggaag ttcttacatt cctcttccaa agtttataga aaagaaaaaa      1860
     gcatgtgtta aygttcrtaa taatgacaat cagtgtttta agtatgctat wctttcagca      1920
     ttatatccta gtaaaagtaa tgccaataga gttaatcaat atcgattgca tgagaacgaa      1980
     ttaaactttg gtgatataga atttccagta aaacttaaaa atattccgaa atttgaaaaa      2040
     ctaaataata tttcagtaaa tgtatacatg cttagaaagt atggaccaaa gttcgaagta      2100
     tcaccttgtc atattacgtc agaaaagaag gaaaaacatg taaatctact catcattcaa      2160
     gatttttaca tagatgaaca tgaagaaaat aatcgtgctg atgatggaat cttgcctaaa      2220
     tatcattacg tttggatcaa aagtatgtct cgacttttga gttctcaact gtctaaaact      2280
     catataaaat cttaccattg tgaaaggtgt ttacaaatat tttatagtga agaaagattg      2340
     gaaattcatg aaaatgattg taaaaattta aataattgtc gaattaattt gcctgactct      2400
     aagaataata ttctcaaatt tgaagattat agtaagagtg aaaaagttcc ttttgttatt      2460
     tatgcagatt ttgaatgttt attgaagcct actgagaatg agaatgcttt ccaactgcat      2520
     gaagcataca gcataggata ctacataaaa tgcagctttg atgatagctt atctggctat      2580
     agatcataca gaagaaaaaa tgaagaagaa gagacagctg cagcatggtt tgttcaagaa      2640
     ttgaaatcaa ttggtgaaaa aattgatgta ctctacaaga atccaaaacc aatgagactc      2700
     acagatttag aggaaatatc ttttcggaga tcaacaactt gtcatatatg tcgaaaacca      2760
     atcmatggtg aagaacttgc tgtacgagac cattgtcatc tcacagggcg gtaagttgtc      2820
     ttctcaatta tatttgaaat aaagtaaacg aaattttgta attctaagat agattttctt      2880
     cttcagtttc agaggtgcag ctcayaattc atgtaacttg aattataagg attcaagatt      2940
     tattcctgtg gtttttcata acctcaatta cgacactcac tttattttaa aagagattgc      3000
     tacttctacg ttgatgaaag gacgagtcac tctaatacct cataataagg aaaaatatat      3060
     ttcatttaca aartatatag atgactgyga catcagtttt agattcatag attcttggcg      3120
     ttttttacct tcatcattgg aaaagcttgc atcatatctg gaaaatgtgc cgatagcagt      3180
     aaaggaattt cgatcagatg gatttacaga tgaaaagata gatcttcttc gacgaaaagg      3240
     tgtatttcca tatgattttg taaatggatt agataagttg acgactacaa aattgccaga      3300
     aaagaatgat ttttataata agctaacaga ttctcatatt gctgaagaag actataagca      3360
     tgctgtccaa gtttgggata agttcaatat tagtacgttg ggagaatatt cagatcttta      3420
     tctgaaaacc gatgttttac tattggccga cgttttcgag agttttcgag aaacatctct      3480
     taaagcctat gatttatgtc ctgctcactt ttatacgact cctggactaa cwttttcagc      3540
     agctctaaaa atgacaaagg tagaattgga gcttcttaca gatattgaca tgctaatgtt      3600
     tattgaatcg ggcattcgag gtggaataag tcagtgttgt aatcggtatg ccaaggcaaa      3660
     caatccatat atgggttctt catacgataa ggatcagaaa acaaagactc tcttatattt      3720
     tgatattaac aatctttatg gatgggcaat ggtacagcct ttaccagttg gaaaatttaa      3780
     atggattgaa tatgagacaa atccaagttt tttcaataca ccaccagatt ctgatatagg      3840
     ctattttgct gaagttgact tggagtatcc tgaagaaata catgatgatc atagggattt      3900
     acctttttgc gcagaacatc ttgcaccacc tggctcaaag cagaagaaac ttctcacgac      3960
     tttgaatgac aagaaaaggt atgtcattca ttatcgagca cttaagcagg tgttagataa      4020
     tggacttcga ttaaaaaagg tgcataggat tttgagtttt gagcagaggg cgtggctcaa      4080
     accatatgtt gaatttaaca cagaaaagag aaagcaggca aagaatgagt ttgaaaaact      4140
     cttctacaaa ttrttaatta atgcagtcta tggaaagtgt attgaacgag agcggaaacg      4200
     tgtagatgtg cgattagtaa ataaatttac aggcagatac ggagcagaag cacgcatagc      4260
     tctaccaaat tttcacagtt gtgcaatctt tgatgaaaat ttggttgcca ttcagctgaa      4320
     gaggacaagt attacaatca aaaaaccaat atacgttggt ctctctattc tagatttgtc      4380
     aaaaacatta gtatatgatt ttcattattc atatatgaaa aagcgagttg gagaaaaatg      4440
     caaactcctt tatacggaca cagatagttt aatatatgaa gttgaggatg ttgatatgta      4500
     tcaagtaatg aaagaagata tacataaatt tgatacttct gattatgacg aaaataatca      4560
     gtttggaatt ccacgtgtta ataaaaaagt tcctggattg atgaaagacg aatgctgtgg      4620
     caagattatg acagaattca ttggtttaag aagcaaaatg tayagtattt tgattgatgg      4680
     agctgagaca gtgaaaaaag ccaaaggtat aaaatccagt gttgtaaaga aatcaatcac      4740
     gttcgaagat tatcgaaaat gtcttcagga tcttgttatt ataaaacgtg agcagtgcaa      4800
     tattcgttca aaattacaca ttgtgcatac tgaaaaacag gaaaaaattg ctctaagtcc      4860
     acacgatgat aaaagattct tattgcctca tagtacagac actttgcctt ggggacatta      4920
     cagaattatg gaagaacaga tggcgcaagc tgcaatgcaa gtagaggggg atgcggagga      4980
     ggggattgta gtggaggaga ggggcaacaa tgacgaagga cgaaaaagag agggagaaag      5040
     tgagaggggg catgaagcaa ccaatgaaaa tgcttcacgg gtggggatga cactttatgg      5100
     tgatgaaggt gaacaaatca ggattgaata tgatgtttta gaggagttta tgcacgagtg      5160
     ggatccatca ttggatagga taggatctga acaagaagag agaagggata tattactaga      5220
     ggctatggaa ggggcagaaa ttgtggtggg aaatgggcta tatgaacgga cgcagcacga      5280
     cgaagagcac attcgagaaa tcgaagcgaa caaccaacct tgtgcaaaga gaccaagact      5340
     cacctaactc taaaataagt aagttctatt tcttagttct ccctcactac ttgtctttct      5400
     cctcaattct cacctatgag acatttttca ctaacataaa ttcttatttt tacttttcag      5460
     aatggatcta tctgcactca acaagattgc tgagcgcgag ttcttgccta agaagaaagt      5520
     cacggacttg gaaaaagatc atgagtacat ggtgactgca ctcaaggagg tsaagacgag      5580
     attcggcacg aagatcgtgg cygaaatcga tgacagcttt caaatatttc tgccagagaa      5640
     gatctcatca gcaatcttga aagatcaaga acttttcaat aatctctcta acacagcaaa      5700
     taaacttagt ttatttataa catatcaggg tggaacttct tttaagttca gtacttgcta      5760
     aaaataaata aaataaaata caaagattga ttatttttaa aaactattta tttgttcgaa      5820
     acttgtacat aatatacatg aataaataca ttattaaaca taatttacaa ttgttttctt      5880
     atttatatac cttagataat tcatacaatc tcatttttat ttatccaact attgtgctcg      5940
     tcactaaatc ctaaccattt aacatatacg cgtttaccac ttttctttaa aactttttct      6000
     actagataaa tttcaggata catagttttg tgaatttccg tttcataaaa gccgccagag      6060
     acgggtttat cataataatc tttgaggtgg taagttactg gatctgtttt tacaactcgc      6120
     gttattgtga aaatttccgt agaccagttt ggygtgtaac ctttttcaaa aacatttttt      6180
     atcctactta ttcgtacttt atctcctact ttgaatttcg gttttttcac tggcgacttt      6240
     tcatttggaa aacgtctctt gacttctcgc tcatttgcct gtgtaacatt ttcaggctcg      6300
     attcctgttg tccgatgttt tctcgaattg tatgctttga gcaagttagg tagaatatcc      6360
     aaccatttat agcttccttg tttgctgaat tctaaccaca ttgcattttt taacgttcta      6420
     ttgaatcgtt cgcatatgct tgcatgaaga ttactatgtg aagagtataa gtgtatattg      6480
     tgcttcttca taagtttttg aaaaattgaa ttgtaaaatt cttttccttg gtcagtttgt      6540
     agattcttcg gtactcgtcc ttctttcagt attgacttca tagctgcagt aacatcatta      6600
     ccactctttg acttgactgg cacggcccat gcatactttg aaaatatatc tatgacagtg      6660
     agtaagtaat gaaaaccttt gttctcttta gaataaggta tcatttctac aagatcagct      6720
     tgccaagtct catctattcc acgtatgtca tattttcttc tcttgtatcg ccgacgtgct      6780
     ggcttgtgca gctcttcagc tactctttga cgttccatct tctttgatta taaaattatt      6840
     caattcttca ataatataat caacaccaga gtaattacgt tgagttgtat yataaagata      6900
     tttcaatttt gcattcactt ccaattgatg tttttcaact tgctgcttat attcttctat      6960
     aacttcacca attccagyaa gtttagaagc tatataattt ayttcagttt gtaggataac      7020
     tttcagtgaa tgcaaagtga ttgcatcgtt tggatkacgt ggctctccta gattgcaaag      7080
     tcgcttmtct tctaaatcaa aatcaccgtc tgatgtaaaa ttaaaaccaa tgcctggagg      7140
     accgcgactc acttgctgcg agccctcaag ttttcttccr aacacatcga gactcatggt      7200
     actactgatg caaataagaa agttgtgcgt gtcaatatat atgtccagct tcacgtaatt      7260
     cttcaataat tgactggatt tcattggtgt gattgttatt tccagcagat cgttcggcaa      7320
     tcaataatcg aagtcgttcg ataagctcgt ttggatcatc ccagtagacg agatcaatgg      7380
     aagaattttt cttagctatt ttatatttag gtataagtcc tcctccgctg ctgttgttct      7440
     ttttacgtgg agtgctgcgg aacattggtg ctaagatatt tttatattta ttacttctcg      7500
     acattcgtat agattcatct ttgctgaatt ttttccgatg agcatttgtt gcttccagaa      7560
     tcttgcgata attttcacga tctgctgaac tcagaagaag atcatccgga tattttttaa      7620
     atagcaattc catcagtcca ttcgttttag gataactttc atttctgact ttgacatatt      7680
     tatcatcaaa ctcaatttct gaatcaccaa tcatatacac tccatcaacc tttcgcactc      7740
     cgtatatatt atcaattgtt ctacggcttt tatctagcaa tgataaaaag tcttcagctg      7800
     attcattttt tccactcgca gatctaaatg tagaattggt tattgtgtca aaagcatcat      7860
     catcatcatc atcatcataa tcataaacag tataatccaa taaacttgtt ttattattat      7920
     tttgatcgtt gagcaaactt gatcgatcga ttcttattcg ttttttcatt ttcttactgc      7980
     tgtttttatc caaaatgtga ttggatggtt gctgcagtgg gctttcactt ttcatctcaa      8040
     caagtttttc aagtggtgtg atgactggtt ttagagtatc accgatgact ttttcaaaat      8100
     catctttctc ctgttttaat aaagtgtatt ttttttaata gcctcacgag ctcgcaagag      8160
     ctcactaaga acattcttct ctttcttgaa gtctgacatg ctgacgtggc gatgtctaca      8220
     actgaactgt aagtttgaga ctcataattc cttttttatt gcaaaacagt caaatccttt      8280
     tctgtatcta ccctcattca tcgrtctatc ttttcaataa cratgaatcc atatctatca      8340
     ttcttccaac attcagaaca aagattccga aattcattga aagttaaatc ggtattcaca      8400
     tgatcttcat agatatgttt aaatttacat catcttgtcg ataaattact aacaaattga      8460
     cattatccct aatgagatgt tttcctatat gagc                                  8494
//
ID   Polinton-8_NVi repbase;    DNA;    INV; 16996 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.06, Created)
DT   15-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-8_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-16996
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1157-1157 (2009).
XX
DR   [1] (Consensus)
XX
CC   TIR is 122-bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           1482..637
FT                 /product="Polinton-8_NVi_1p"
FT                 /translation="MAEAILLANQEKQDVVAEEFNSERAKNHSRPLLFAST
FT                 YLLNKSGSKKLYIGLEYDDSTQKYQPIIELKNTQYSRGLRIDIESWLELEN
FT                 KLEDISTYFKSNSVALCIQQQERIKLKKMDIILTTSYGMKSVMFVLQQQLQ
FT                 QTQESLYVQKKKRALMPSITMQKRTFDGLLNIVVCVNERYRRLERVLNEIN
FT                 ECKNLLRDELAEILTLYDYHNTERSYDIIKSIVIDKRKYLKENILKKLSPK
FT                 NSCFLDNYFEMIFTEMIVLHSDVFHDEVYNIFCNQNAQKI*"
FT   CDS           14795..13707
FT                 /product="Polinton-8_NVi_6p"
FT                 /translation="MMQEIEKQYFDPGHAVGFTGARNLISANKKKIPASRI
FT                 KDWLTRHDTYTLHKPIRKKFPRLYYDVLGLDHVWEADLIVLSSLKSHNDNY
FT                 SYLLVVIDVLSKYTFVEPLRDKTVKEVTKAFKQILNKNKNRCPYMLQTDAG
FT                 KEFVGKEFQKFLSETGIKFRVARNPDVKAAVVERFNRTLKERMFRYFTYKN
FT                 TKRYIDVLQAIVQSYNNSIHSTIKMKPAAVTVYNAQEARKNMLEKSLKQQV
FT                 IRKRPRYKVDQYVRISRERNIFEKGYEKGWSEEIFKIVKVKKRQNLFIYEL
FT                 VDLEGEEIEGFFYPEELSLVHSERVSREEYKINEILKTRGKGAKKEYFVSW
FT                 IGYPDKFNSWILASDVTKL*"
FT   CDS           12054..11023
FT                 /product="Polinton-8_NVi_4p"
FT                 /translation="SSGRFFFNQKLVTPSNTLYPYRAYIETLLNYGPDAKT
FT                 SHLSTSLWGADTAGKMDEKPATDCANKGLLSRQKFTSDGKVVDLLGHLHID
FT                 VCNQDRFLLNGVEMRVRLVRAKDAFCLMDASDKNYSVHIKEASLLVRRAKI
FT                 NPGVLVAHAKTLATTTAKYPLTRVEVKAFSMHNGILGECLDNVILGQLPKR
FT                 LIIGFVNNKAFNGDRLLNPFNFQNFGINYLSLYIDGQQVPGKPLQPSFSAA
FT                 APLYVDCYHTLYSGTGIHFANEENDIDRTEYPDGFCLFAFDLTPDMSAHCG
FT                 THWSLVRNGNVRIEVRFDKPLTHTVNCIVYAEYDNILEIDSMRQVILDYNS
FT                 *"
FT   CDS           16935..16111
FT                 /product="Polinton-8_NVi_8p"
FT                 /translation="MARRGKSSWVSRWGVMTQERVSPGGAPWGGDRGGQEG
FT                 SWTAYSTFFVSVSLYAKMDTCFMHPWTMICAGPTSAGKTVFVQRFLKHLDV
FT                 LANVKFDRIIFYYSEWQESYRVENVEIEFREGLPRNEDYSNDPEKRKLLII
FT                 DDLMRESANNGTIIDLFSKGSHHRNASVIYICQNIFHKGQRDISLNANYMV
FT                 LFKNPRDRAQIQHLARQLYPEDSKFLQEAYYDSTIKPYSYLVIDLKQSTPE
FT                 ELRFRSCIFPDDEYHYVYIPKYSSSQYSKLNVV*"
FT   CDS           join(10819..9977,10007..9441)
FT                 /product="Polinton-8_NVi_3p"
FT                 /translation="MDFIIDIQAFHDKEGLFLPKEIAVIAVDRNFIAHWIV
FT                 KPPCDYNELPKGIISTNSYLSCYHHGIEWYDGEAALEDIYPSLRYIAREAH
FT                 TIYTRGYQKANLLERILGRQITNLEEYSCPSFRNLSSVDDHICMYHGGKSE
FT                 HLTCALAYTFRVRSWLRKALYGHTEIDMNEQRKKKKSPIEKPPRRALVDGA
FT                 TSSSSSSSSSGSSVAPRKISVNNNNISKITTSVTATPAEVIESCFAVIVEE
FT                 EEAAAAASRARGTGGGGSGANRKTKRGRSRRRALLLETLRKKSPTTRNLTM
FT                 NSLQIQQALRGISAQTVGVFPADRLPRVWTRPVAIIANTQEHHLPGAHWIA
FT                 IFVDKNGHGVYFDSYGIQPTVSYHLDGLRRNCTLFTWSTSRLQSFDSDVCG
FT                 NYCVDFLYFMCRYNCAMDFSKLFCGDTRSNDKLCMVIFRKIMKSIKKKKFK
FT                 SVSNSCSYCIQSCKSESCKKKKRI*"
FT   CDS           join(16078..15695,15691..14867)
FT                 /product="Polinton-8_NVi_7p"
FT                 /translation="MAKRASRESRALIRKKNNASPFEEKYFVLLQALRHSN
FT                 KEQRLALLRTADEKLVKYICECALNVLKGVVCLNVTEKNKLKKYKTILRNL
FT                 TKVTKRKKNSWKSKKRIIVQKGGSFLGFLLPPILDLFLNAKMERARKMVLI
FT                 PQESLQKMQASVKTASINSLPAAAGVQGVPEQEKKLTSESIQTPGDKFSRL
FT                 DSEMRQILDSGKYTTDSDKYRDFLQVLQRYLFFVDEKRRFDDKKNLADGKS
FT                 DEKDQMSDEYILESVPKLYKNKTKLLLNHLKNNSNRISWSATGVVKIDGEK
FT                 IKNSNIIDLVNDVARARKNIKAAGRQQFGELLFTTQIPREFIGNSEFFNLN
FT                 GSLSRSGFENGLEKSWKKSRREEDEDDDEEEIDDFQNSKSDSSLIMDTIVA
FT                 KKAKRRQQ*"
FT   CDS           join(13704..12925,12934..12377)
FT                 /product="Polinton-8_NVi_5p"
FT                 /translation="MNQSEFTVVLPSNSSMTFFPDNTTTSFSVRLPRAIDL
FT                 HEKWQVGLSEIHIPCTTLHLRYKDTLISPAEGKDNFHFQHGVYKSVQGLID
FT                 AINEGFKEYHDNQTAKELLYDEKGGYVTLREYPELVKKKSRLGKPVQRILG
FT                 FGNGTFRITLESETKPYRDYVASQPATLAHAIPDQLFIYSNICEPCIVGDA
FT                 HAPLLRIVNVEARDYKYGSTIVKRYSPVNYIPLLNSRFQIIDIDIRDQFGS
FT                 SIPFEFGTLTVALHFRREFKRILKMNYYDTYYSAQSGGGGGGIASVYVGSR
FT                 GQRGHGIGSFLGGLFRRALPFLAKGARAVGREALRAGINVLDDVTENNMSF
FT                 KDSLNNRLAESGLKLKRKANEKISELMEGSGYKGMVLKRASQLQYVSRARK
FT                 TANKKKKRRTSKKKTKAVKRLKSGRKKKKNTRGKKVKSAVNKKRRKSTKKN
FT                 *"
FT   CDS           join(3484..3936,3861..7637)
FT                 /product="Polinton-8_NVi_2p"
FT                 /translation="MDISNVSDDESNTPSHATPASPPSSSSPSTSPPASPP
FT                 APTQLDPHYQVGRGIDRGDLKKVVILNESTRRARNFFTAARDVEFGFIITP
FT                 NIDNPIVYLRSALLEIYRYLVSGLNENILIGVTVNSDRFLLEATHGFQCER
FT                 SAISTLTIFGTVIFARGDAWFPVRKIRDFDFNDLWNRIGSVTQSNEAFFID
FT                 ETLRVNVTYSDLPRGGNGLQESKLVDALNRQSILTIKNNDNLCLPRAIACG
FT                 LVFLEKAESERTIWEKNWRKIAFNSMAHQRTCAIEISQKAGVVVPEEGCGY
FT                 TEFQKFQLYLLDYGVALMVYYIESLGRGEGALFNGKAFFDGVNIKYTKKIN
FT                 IAFHRDINHFNLILNLTALCVKKHQRYYCEDCNTVYTRPFHHKCENLCISC
FT                 NTSPACQALGAAITCDDCHREFKNPQCFANHKAPGSYTMSKSKNARRSICQ
FT                 FVKYCTFCHYVYDIDSNKHNCKNMYCTNCKAVHEKNANCYMQIRPLKKNSR
FT                 VVTTTTNFHPETLFVFYDFETTQNTVLREEGENSVYLHVVNLCVAQFACSS
FT                 CLNENDVSQFCNYCGLRQHVFTKEPISSFLNLVLRKKTNFKNIICIAHNAK
FT                 AFDSQFVLRDIVENRIVKESGSVPSLIMNGRKIILISFGKTKFIDSINFMP
FT                 MKLAALTASFGLPEEAKKGYFPHLFNTDDNADYEGPYPAAEYYAPDAMSSK
FT                 EREHFFNWYNEVSIREEFNMRREIVSYCVQDVTVLRLACLKFRQIFLDCAN
FT                 LCPFTESVTLAGSCSLAYARNFLKDNLIGLISNEGYVRVDRHSQKAVEWLL
FT                 WVEQQVGREIIHAGRGREYTLFGRIKVDGFLADLQNPETGTVYQFHGCYFH
FT                 GCPICYPTRRDAPLLDRTTLNQKYESTLAISAKIRSNGFILVEMWEHDFNS
FT                 NIATLNAFKRLIENHPIAHNEILNPRDAFYGGRTGNIATLYKVEPGEKIKY
FT                 VDVCSLYPFVCKTGKFPIKHPRVYNSTDCLELTGPNFEYFDRVEGLVKCTI
FT                 LPPRKLFHPVLPYRLHNRLLFPLCRTCCEILSKVPCTHVTPEARALSGTWV
FT                 SDEIKKSLQLGYTILNISVIWQYEITQYDPKAGNQDDTTCGLFTDYINLFL
FT                 KLKQESSGWPRNCTDEASKAAYIAYYKEKEGIDLDPQKIEKNPGMRSVAKL
FT                 CLNSLWGKFGQRGNLPNTEIINSSEQFLQLLTSPEKEVGRIVLVNENVIYA
FT                 ASKLKTEVATSARNTNVVIAAYTSAQGRLKLYEYLENLGERVLYYDTDSVI
FT                 YVSKGERDEYEPETGSLLGQLTDELEEYGEGSYIETFVSGGPKFYAYRVRA
FT                 PNGETFDTCKVKGIRLNYENSQKINFDSVLEMMENHEFDIIDAEEEEEGEE
FT                 EVNEDRGANNCIYVRNFHIGRTSVNDIISFKQTKKCRAVLKKKTIC*"
XX
SQ   Sequence 16996 BP; 4983 A; 3409 C; 3388 G; 5210 T; 6 other;
     agtagagagg ggcaagccca ggcagacagg taggggaggt aaaagagggg aggggtggcg        60
     ccgtggctcg tcggggcaag tctagttggg cccctctggt gggaggtgat gacgtaagag       120
     cgtcgcacgt gcggtggcgc gtccccggcg gggggtactg cagggcccgt gtgggtgtag       180
     ggatcgcacc cgcgctacag gaggtcattt gcacaatgaa aaggacaata agtgcgttta       240
     tctgttggct agctacgaca tgcgcattga cccttttttt tatatagcat accgagctat       300
     gtaagtggcg tkaaagcaat gagctgcagc agaatttttt tcctacagga tgtgtagagg       360
     gatcgaccct ttttttgaca aggtgaaatt tcgtgcgatt tggaggaaag ctacgagaaa       420
     aagcagtgag agaaatgcta ttatgcgtgt ttctcggaga aataaaactg aaggtttttt       480
     tattttacaa gctttgttaa aatgaatttt tgtactaaag attgacgtat atagtatgtt       540
     ttcaatagaa cattttttaa ataatcgggt agttgtgagg aggatggtga aggttaaaaa       600
     tttttaaaag caaaattatg taaataaatt ttttatttat attttttgag cattttgatt       660
     acagaaaata ttgtaaactt catcgtgaaa aacgtcacta tgaagtacta tcatttcggt       720
     gaaaatcatt tcaaaataat tatcaagaaa acaagaattt ttcggtgaga gtttttttaa       780
     aatgttttct tttaaatatt ttcttttatc aataactatg cttttaataa tatcatagct       840
     tcgttcagta ttatggtagt catacaacgt taaaatttca gcaagttcgt cgcgtaacaa       900
     atttttgcac tcattaattt cattcaatac gcgttctaaa cgccgataac gctcatttac       960
     acacactaca atgttcaata atccatcaaa tgtccgcttc tgcattgtta ttgatggcat      1020
     caaggccctc ttcttctttt ggacgtaaag agattcttga gtttgttgta gctgttgttg      1080
     gagcacgaac atcactgact tcatcccgta tgaagtagtt agaataatgt ccattttttt      1140
     cagttttata cgttcttgtt gttgaataca taacgcaaca ctgtttgatt tgaaatacgt      1200
     cgaaatatcc tctagtttat tttctagttc aagccagctt tcgatatcga ttctgagccc      1260
     tctggaatat tgagtattct ttagttcaat aatcggttgg tatttttgtg tggaatcatc      1320
     gtattccaag ccgatataaa gtttcttcga tcccgacttg tttagaagat acgtagaggc      1380
     aaacagaagc ggacgactgt gattttttgc tctttcactg ttgaattctt cggcaacaac      1440
     atcttgcttt tcctggtttg caagtaagat agcttcagcc atgttgttgt tgaataaagt      1500
     aaataaaaca ctgtcttgaa atgcacaacg ttttgttcaa ttagttagac gttgttgtta      1560
     aataaagcac tatcttgaac tgcacagtga atttacagcg atgcacaagg taaaaaaatc      1620
     gagagttttt ccagttagga cgtcaatgaa aaaaaaaatt ccacaaagat cgagtaactg      1680
     gatagagcga gaggtagact gtgtatggat gctcacggtc aagtgtaccc tttttttata      1740
     gcggtttggt gtcactgcga gaaaatcccg gctrctggtg gtggtggtaa acggttcaga      1800
     gtagagggtg gggggtgcgt gcggcccaat acaagggatg acctgactcg gcgtgagagt      1860
     ggtggtggta gcgtaggtga gccacaggtc cagaagaggg gatactcagg gcatccctgt      1920
     attatgtaaa aaaagggcac tgatgcacct gtattgtgga aagtgtatga aaaaaaatgt      1980
     caactgttct acactgagga agaaaattct ttcgagggtg gacgagatct cgggaaaatc      2040
     tagtggtcac tctgagtttc gcttgcgcag tgcaaactac gttccgtgtc taaggctaaa      2100
     aatgtctctc cgaaaaattg tgtggcgtct cgttcactat ttagtggaca acaattatga      2160
     cgtggagaga ttgtttgtgc aaaaaaagtg gcaaaagtgc gtgaaacaag caagcgagcg      2220
     tggcttgctg aaaatcgcgg aaaaagtgtt tagccacgca cggccacgac aaataggccg      2280
     gtgctacccg ctgtatagga aaaatgaaga gctggttcga ctagccgggc aagtgtgtga      2340
     agcttgtcac cattgggact acacacgtaa tcgaggtcca ttacgtgtgc ttgcagagcg      2400
     aaaccgtaag taaactctat gattctggat aaacttttct tttgttttgt tttttaaacg      2460
     tgtggcacat tttaaaatat ttgtggttta caggccgtgt tgcactatcg ccgccagtcg      2520
     cagcagcacc aacaccgccg ccggctgtgc aagcattacc agtgccggta tcagcagcag      2580
     cagaagcaac tgcaacaatt gaggcgtgca tggaattact ggggactaat gccgatgatt      2640
     gggtcgagtg gaatggcgaa tcttgctctc caacatcttc gcaagtcccg gtggcggata      2700
     ggactataac gagcgaagag agagaagtcg aactaagcat acaaggtacg acggatgcgt      2760
     ggatcgactg gagtggtgac atgctccagg tgccgccgcc gccgatcgat gtacagccct      2820
     cgtcagcatc gtcaccgtct cttagaccgt cttcttctgc gccgatctcg gaagtagaaa      2880
     atggtaagtt tcaaatttaa tatacattgc acgcacacac acacacaacg tagtaatgaa      2940
     aaatatttaa aaataataat aacattttaa tttatatttt cagtcttcga agatctccag      3000
     ggttattttg acgacgacaa cgaggatgat aacgatgtaa ttatcctgtc cgatcaaccg      3060
     gcttttcctg accttggaaa tgtcaccctt gaaggggtga tgtttgaggc tgccgagatg      3120
     ttcgagacgg ggtcagctgc gtacgctgat atcctcaatg caggactaga accgcaggcg      3180
     caatcacagg gtcctcttta cgaggacata agtgacgaag aagccttgag catcatattc      3240
     gactcgcaat tggtgcccga tgacagcatc gcttggctcg aggcggctgc tgctaatgcc      3300
     gcygctgctg ctgctgcagg tccttcacag ataacatgtc tcgacgttca aggtgtgtaa      3360
     tttatataaa taaaaaaaaa agaaattttg tcaacgatat tctgtaatta atttatttat      3420
     agtattataa taaatgaaac aaattaaact aaaaaaaatt cttgtattta tttaaaaaaa      3480
     gatatggaca tctccaacgt cagcgatgac gagtccaaca cacccagcca tgccactcca      3540
     gcatcacctc catcatcatc atcaccgtca acatcacctc cagcatcacc tccagcacca      3600
     acacaactag atcctcatta ccaagtaggc agaggaatag atagaggtga tttaaaaaaa      3660
     gtcgttattt taaatgagag tactcgtcgt gctcgtaatt ttttcaccgc ggctcgcgac      3720
     gtagaattcg gttttataat aacgccgaat atcgataacc cgattgttta cctgcgttcg      3780
     gctttattag aaatttatcg atatttagta tcgggtttaa atgaaaatat tttaatcggc      3840
     gttacagtaa atagtgatag atttttgctc gaggcgacgc atggtttcca gtgcgaaaga      3900
     tccgcgattt cgactttaac gatctttgga accgtatagg tagcgttaca cagagtaacg      3960
     aagcattttt tatagacgag actctccgcg taaatgtgac ttattcagac ttaccacgcg      4020
     gtggtaatgg tctgcaggag tcaaagttgg ttgacgcgtt aaatcgtcaa tcaattttga      4080
     ctattaaaaa taacgataat ttatgcctac cgcgggctat cgcatgcggg ttagtttttc      4140
     ttgagaaagc ggagtccgaa cgcacgatct gggaaaaaaa ttggcgaaaa atcgccttta      4200
     attcaatggc gcaccaaaga acatgtgcaa ttgaaatttc tcaaaaagct ggagtagtcg      4260
     tgcctgaaga aggctgtggc tataccgagt ttcagaaatt ccaattatac ttgttggatt      4320
     acggagttgc gctaatggta tattatatag agagtttagg ccgtggagag ggtgcgttat      4380
     ttaacgggaa agcatttttt gacggagtaa atataaaata tactaaaaaa attaatatcg      4440
     cgttccatag ggatattaat cattttaatt taattttaaa cttgactgcg ttatgtgtga      4500
     aaaagcatca gcgatattac tgtgaagatt gtaacacagt atatacgcgg ccttttcatc      4560
     ataaatgtga aaatctttgc atatcgtgca atacttcacc agcgtgtcag gctctcggtg      4620
     cggccataac ttgtgacgat tgccaccgtg agtttaaaaa cccacagtgc ttcgcaaatc      4680
     acaaggctcc tggctcgtac acgatgagta aatcgaaaaa tgcgcgacgc tcaatttgcc      4740
     aattcgtaaa gtattgtact ttttgtcatt atgtttatga tattgactcg aataaacata      4800
     attgcaaaaa tatgtactgt acgaattgta aagcagtgca tgagaaaaat gccaactgct      4860
     acatgcaaat tagacctcta aaaaaaaatt cacgtgtagt tacgacaaca acaaattttc      4920
     acccggaaac tcttttcgtc ttctacgatt tcgagacgac gcaaaacacc gttctaagag      4980
     aagagggtga aaatagcgtt tacctacacg tggtaaattt atgcgtggcg cagtttgcat      5040
     gctcgtcgtg tttaaatgaa aacgatgtat cgcaattttg caattattgt ggccttcgcc      5100
     aacacgtttt cacaaaagag ccgatttcta gctttttaaa tttagttttg cggaaaaaaa      5160
     ctaattttaa aaacatcatc tgcattgcgc ataacgcaaa agcatttgat tcacaattcg      5220
     ttctacgtga cattgtagag aatcgaattg tgaaagaatc cggcagcgtt ccgagcttaa      5280
     ttatgaacgg acgaaaaata attttaataa gtttcggtaa aacgaaattc atagatagca      5340
     taaattttat gcctatgaaa cttgccgcat tgacagcctc gttcggtctg ccggaagaag      5400
     caaagaaagg atatttcccg catctgttta atacagatga taacgcggat tatgaaggtc      5460
     cttatccggc agccgaatat tatgcaccgg atgcgatgag ctccaaggag cgtgaacact      5520
     tttttaattg gtacaatgaa gtatcaatta gagaagagtt caatatgcga agagaaatag      5580
     tctcttattg cgtgcaagat gtaactgtct tgcgattagc ttgtttaaaa tttagacaga      5640
     tattcttaga ttgcgctaat ctgtgtccat tcacggaaag cgtgactttg gctggctcgt      5700
     gctctcttgc ttatgcccgt aatttcctaa aagataattt gataggtctt ataagcaacg      5760
     aaggttatgt gcgcgtcgat agacatagcc aaaaggccgt agagtggttg ttatgggttg      5820
     agcagcaggt aggcagggaa atcattcatg ccgggcgtgg acgggagtac acccttttcg      5880
     gtcgtataaa agtcgacggg tttttagcgg atcttcaaaa tccagaaacc ggtacagtgt      5940
     accagtttca tggatgttat tttcatggct gtccgatctg ctatccaacg aggcgcgatg      6000
     cgcctcttct agatcggact actctcaatc aaaagtatga gagtacccta gcaatttcag      6060
     ctaaaataag atcaaatggt tttattttag ttgaaatgtg ggagcatgac tttaattcga      6120
     atatagctac tttaaacgct tttaagcgct taatcgaaaa tcacccgatc gcgcataatg      6180
     aaattctcaa tccgcgagat gctttttacg gtggtcgcac gggtaacatt gcgaccttat      6240
     ataaagtcga accgggtgaa aaaataaaat atgtcgatgt ttgctcttta tacccctttg      6300
     tttgtaaaac gggcaagttt ccgataaaac acccgcgcgt atataacagc accgactgtc      6360
     tcgaactaac tgggcctaat tttgaatatt ttgaccgtgt tgagggctta gttaaatgta      6420
     cgattctacc gccgcgtaaa ctctttcatc ctgtgctacc gtatcgtctg cataatcggt      6480
     tactttttcc cttatgcaga acttgttgtg aaattttgag caaagtccca tgtacacacg      6540
     taacgccgga agctcgcgcc ttaagcggta catgggtatc ggacgagatt aaaaaaagtt      6600
     tacaactcgg ttatacaatt ttaaatatca gcgttatctg gcaatacgag ataacgcagt      6660
     acgaccctaa agccggtaat caagacgaca cgacatgcgg attgtttacc gattacatta      6720
     acttattttt aaagttaaaa caggagagct cgggctggcc acgtaattgc acggatgagg      6780
     ctagtaaagc ggcttacatc gcctattata aagaaaagga gggtatagat ctagatcctc      6840
     aaaaaataga gaaaaatccg ggcatgcgct cggttgcaaa actttgttta aatagtttat      6900
     gggggaaatt tggacaacga ggtaatttgc caaacaccga aataattaat tcgagtgagc      6960
     agtttttaca attattaact agcccggaaa aggaagtagg tagaatagtt ttagttaacg      7020
     agaatgtaat atatgcagcc agtaagttaa aaacagaagt agctacttcg gcgcgaaata      7080
     cgaatgtagt gatagccgct tacacgtctg cgcaaggacg tttaaaattg tatgaatatc      7140
     tcgaaaatct aggcgagcgg gtactgtatt atgataccga ttccgtcata tacgtatcaa      7200
     agggtgagcg tgatgagtac gaaccagaaa ccgggtctct gctaggccaa ttaacagatg      7260
     aactggaaga gtacggagaa ggctcttaca tcgagacctt tgtttcgggc ggtccgaaat      7320
     tctacgccta tagagtgcgt gcacccaacg gcgaaacctt tgatacgtgt aaagtaaagg      7380
     gcatccgact caactatgag aatagtcaaa aaataaattt cgactctgtt ttagagatga      7440
     tggaaaatca cgaattcgat attatagacg cagaggagga ggaggaggga gaggaggagg      7500
     taaatgagga tcggggcgcg aataattgta tatatgttag gaatttccat ataggtcgaa      7560
     cgtcagtcaa tgacattatt agttttaagc aaacgaaaaa atgtcgcgct gttttgaaaa      7620
     aaaagacaat ttgttaatca tcgatattct gtaccatatg gttatataca tgaataaaaa      7680
     ataaaaataa aaattatatc ctattttatt tactcaaccc cttaaatcct ataaaataat      7740
     agcatccctc aggcggcggc ggcgcggcgc ggtggcttgc tgatcagcgg gaccggaccc      7800
     cccccccccc ccccggcacg cgctctagta ggctagtagc gagggcgcgt gcacgcgcgc      7860
     aggtaaaaaa agacctagca gggccgctgg gtaggacttt tactcgacgc gcaggtaagc      7920
     ggtttaaccc cggcgcaggt gaatgaccag cggtgtcgct tctcgcactg cagttgacct      7980
     atattttaca aggagacatg cgccactata gaagcaacac ctgtagtggc gctctgaacc      8040
     gaaaattcgt atacagcatg gatgattttc ttcactattt cctcctcctc ctcctyywtt      8100
     cctctctcac cccacttatt tttttcgcta tagcaacact agatgtagag agagagagag      8160
     agagagagag agagagagag agagagagag agagagagag agaggggaga aaccaaattt      8220
     tctttttgct ctagtaaaat ctgtcatacg tagacagttt gtagaggtag caactcctgc      8280
     atcatgaatc ctcgtggagt tcttgcacgg gacatggatc ctttgattca tacagttcat      8340
     gaagtgagag tgtctgcgtt tcaaacacca tcttgtttcc atatacaatt aataaaagaa      8400
     gatgccgcgt acgtgaaatt ggaggcagaa atgttaaatt attatagtac acagtcgttg      8460
     ttatattttt gtgaagaaag ttttacaatt tcaatggaaa aatctgattc accagtgtta      8520
     cacaaggaaa aactccacga gttaaaggta agaaaaagaa gaagaagaag aagaagaaga      8580
     atgaggaatc caaatttatt ttttacgata atatagtgac agaatttttt tttcatttta      8640
     gggaaacacg ataattgcag tgaaaataat gggaagatgg ttacgaggag taacagaaga      8700
     aggatgcccg caacgatgcc gactaataga taatggtaca tgtgtgactc tgattgagtc      8760
     aaacgaggaa agtggcattt atctgctaga agcccgattt cttgccttac ctccacgagc      8820
     aattttagct ggacttggtt tcgtcatgcc catatcgaca aatggtctcc actggtcacc      8880
     tcgttctgct gaaatatttc ttatggtcac cgtaaaccgt attctaagat gcgtttttgc      8940
     acaaaaagga ttattcgaca attcagctta cgtatttcta agcagtgtgg gcaaggaagg      9000
     tggaggtatg gttcatgtga atccaatgct tgtcgcattt gacacagcca tgaatgatct      9060
     caccggaatg catcatccaa tctggccatc agatactttg cgttaataat atataaattt      9120
     catataaaaa taataataat aaaagtaaac gaaaaatcta tcaaagttgt ttttctcttt      9180
     ctgtctttta acctttttct tgacaagaat attaataaaa tttaagacgg aggaggagga      9240
     ggaaataaat aaacatacgt atttcacgta aaaataattt gaaacacaac tacaattttt      9300
     tcttttaaaa aaatttatta aatcagttga ttgttaaaaa aaatatacgt aatacatgag      9360
     aaattcttaa atctagaata aatgcggtta tataattcac tcataaattt tgaatacgta      9420
     gtaatgtaaa ttaacaaaag tcagattctt ttctttttct tacaagattc ggatttacaa      9480
     gattgaatgc aataagaaca tgagtttgat acacttttaa attttttctt ttttatactt      9540
     ttcataattt ttcggaaaat taccatgcat aatttgtcgt tactccttgt gtcgccacaa      9600
     aagagtttag aaaaatccat agcacaatta tagcgacaca taaaatacaa aaaatccaca      9660
     caataattgc cgcacacatc ggaatcgaaa ctctgcaacc gacttgtaga ccacgtgaat      9720
     agtgtacaat ttcgtcgcaa tccgtcaagg tgatacgaca cggttggttg tataccgtag      9780
     gagtcgaaat aaacgccatg accgtttttg tcgacaaaaa ttgctatcca gtgagcacca      9840
     ggtagatgat gttcttgagt attagcaata atagcgaccg gtctcgtcca caccctgggt      9900
     aaccggtctg ctgggaagac tccgacggtc tgtgctgata tgcccctcag tgcctgctga      9960
     atctgtagtg agttcatcgt aaggtttcga gtagtagggc tcttcttcta cttctccctc     10020
     tctttgtttt tctatttgcc ccactaccac cgccaccggt accacgagca cgactagcag     10080
     cagcagcagc ttcttcttct tcaacaatga cagcaaaaca agattcgata acctcggcag     10140
     gtgtggcagt aactgaagta gtaattttgc tgatgttgtt gttgttgaca ctgattttac     10200
     gaggtgctac agacgaccct gatgacgacg acgacgacga cgacgatgta gcaccatcca     10260
     cgagtgctct tcgaggaggt ttttcaattg ggctcttctt cttctttctc tgctcgttca     10320
     tgtcgatttc ggtgtgaccg tataaggcct ttctcaacca tgagcgcact ctgaatgtgt     10380
     aagccaatgc acacgtaagg tgttcagatt ttcctccgtg atacatgcaa atatgatcgt     10440
     ccacactgga taagtttcta aaggatggac agctgtattc ttcaaggttt gtaatctgtc     10500
     ttcccaaaat acgctctagt agattagctt tctggtagcc acgtgtgtaa attgtgtgtg     10560
     cttctctggc aatatagcgt aacgacgggt aaatgtcctc caacgcggcc tcaccatcgt     10620
     accattctat accgtgatga taacacgaaa gataagaatt agtcgaaatt attcccttgg     10680
     gtaattcgtt gtaatcacac ggtggtttca caatccaatg agcgataaaa ttacggtcaa     10740
     ctgcaattac agcaatctcc ttgggtaaaa ataacccttc tttatcgtga aaagcttgga     10800
     tatcaatgat aaaatccatt gtagctatcg actgtttctt tctcaaatac tagagatgaa     10860
     ctaacagccc tcaaaatccg gagaggttat ataggcaaac cctctccctt ctttacggtt     10920
     tctccctctc tccctcctgc atacaacgca gaactttaac gaaaaagagg gaggaggcag     10980
     agttctgtga ttcgttcgtt cgttcttact gttacgcaca tcttatgaat tgtaatctaa     11040
     aataacttga cgcatagaat cgatctctaa aatattgtca tattcagcat aaacgataca     11100
     atttacggtg tgtgttaatg gtttatcgaa acgcacttcg atacgcacat ttccattacg     11160
     gactaaggac caatgcgtac cgcaatgagc agacatgtcg ggggtaagat cgaatgcaaa     11220
     caaacaaaag ccatcgggat attctgttct atcgatatca ttttcctcat ttgcaaagtg     11280
     tattccagta ccagaataaa gagtgtggta acagtctacg taaagaggcg cagctgcgga     11340
     gaagcttggc tgtaacggtt tacccggcac ttgttgacca tcgatataaa gtgataaata     11400
     attaataccg aaattttgaa agttgaatgg atttagtaat ctatcgccgt taaaagcttt     11460
     attattgaca aatcctatga tgagtctttt cggtaattgc ccgagaatta cattatctaa     11520
     acactcgccg agtataccgt tatgcatgct gaatgcttta acctcgacgc gtgtcagagg     11580
     gtattttgca gttgttgtcg ctaatgtttt agcgtgtgcc actaaaacac ctgggtttat     11640
     ttttgctcgt cgtacaagta aactagcttc ttttatatgt acactataat ttttatcgga     11700
     ggcatccatt aaacaaaaag cgtcctttgc acgtaccaaa cggactctca tttctacacc     11760
     atttaaaaga aatctatcct ggttacatac gtcaatgtgc agatgtccta aaagatcaac     11820
     gacttttcca tcgctcgtaa atttttgacg acttaaaaga cctttattcg cacaatcagt     11880
     ggcaggcttc tcatccattt ttcctgctgt atccgctccc cataacgacg tcgagagatg     11940
     cgaagttttt gcatcaggtc cgtaattcaa taaagtttca atgtacgctc tataaggata     12000
     cagtgtatta gacggcgtca caagtttttg attgaaaaaa aaacgtccac ttgactaaac     12060
     attgagtgca agaaattgtt cacaggtgcc acactcgcat ccgtttcctt gttgtggggt     12120
     gttatttgaa catttagttt gatcatagta tgagctaaat ctatatactc ttcgcctgct     12180
     gcggcgacta aaaattctaa aggtgcttga tcggagagtg atgaaacagg cttgtattcc     12240
     acacatgatg atgattcgat agtggtctgg gtcattggta gtgaaaacaa atcaagctcc     12300
     gattttaagc actcgcagct tgaatgatgt aagaaagaca ttttaaattt ttgatttaat     12360
     cgaaaatatc caaaacttaa ttttttttag tagatttcct acgctttttg ttcactgcac     12420
     ttttcacttt ttttcctctt gtattcttct tcttctttct accacttttt agtcttttta     12480
     cagcttttgt ttttttcttg ctagttcgcc tcttcttctt cttattagcg gtcttgcgtg     12540
     cacgactgac gtactgcaac tgtgacgctc gtttgagcac catcccttta tagccggagc     12600
     cttccataag ttcgcttatt ttctcattag ccttacgttt tagtttcagt ccagactcgg     12660
     ctaggcgatt gttgagggaa tccttaaatg acatattatt ttctgtcaca tcgtcgagga     12720
     catttatacc tgctctcaag gcttctcggc cgacagctcg ggctcctttc gccaaaaacg     12780
     gtaatgctcg tcgaaatagt ccacccagga aggaaccaat accatgaccg cgctgccctc     12840
     gcgagcctac atacacactc gcaataccgc cccccccacc accactctgt gcactataat     12900
     atgtgtcgta gtaattcatt tttaaaattc tcttctaaaa tgaagtgcaa cggtcaacgt     12960
     tccaaactcg aatggtattg aactcccaaa ttgatctctt atatcaatat ctataatttg     13020
     gaaacgactg ttcaaaagtg gtatataatt aacaggtgaa tatcgtttaa caatagtact     13080
     accgtattta taatcccttg cttcaacatt cacaattctt aacagaggcg catgtgcgtc     13140
     gcctacgata cagggttcac aaatgtttga ataaataaaa agttggtcgg gtatagcgtg     13200
     agcgagagta gcaggttggc tagctacata atctctataa ggtttagttt ccgactccag     13260
     tgtaattcta aaggtaccat ttccaaaacc aagaatacgt tgtacaggct ttccaagtct     13320
     gcttttcttt tttacaagct ccggatactc tcttagagta acgtaacctc ctttttcatc     13380
     gtaaagcaat tctttagccg tttgattgtc gtgatattct ttaaagcctt cgtttattgc     13440
     atcaatcaaa ccctgtacgg atttatatac accatgctgg aaatgaaaat tatccttccc     13500
     ttctgcaggt gatattaacg tatctttata acgtaaatga agcgtagtgc agggtatatg     13560
     aatttctgac agtccaactt gccacttttc atgtaaatcg attgcacgag gtaatcttac     13620
     tgaaaaacta gtcgtcgtgt tgtccggaaa aaatgtcatg ctactattac tagggagcac     13680
     tactgtgaat tccgattgat tcatttttac agctttgtta cgtcacttgc gagaatccaa     13740
     gagttaaatt tgtcgggata gccgatccag cttacgaaat actccttttt agctccttta     13800
     ccgcgtgttt ttaagatttc atttatttta tattcttctc gcgatactct ttcactgtgc     13860
     accaaactca attcttctgg gtagaaaaat ccttcaattt cctcaccttc taaatcaacc     13920
     agttcataga tgaacaagtt ttgacgtttt tttactttaa caattttaaa aatctcttcg     13980
     ctccagcctt tttcgtaacc tttttcaaag atgttacgct ctctgctaat tcgaacatac     14040
     tgatccactt tatatctcgg tcttttccgt ataacctgtt gttttaaaga tttttccaac     14100
     atattttttc tagcttcctg tgcattgtaa actgtcacgg cagcaggttt catttttatc     14160
     gttgaatgta tactattgtt ataactctga actatagctt gcagtacatc aatataacgt     14220
     ttcgtatttt tataggtaaa atagcgaaac attcgttcct ttagcgttct gttgaatctt     14280
     tccacaactg cggcttttac atcaggatta cgcgctacac gaaattttat acccgtttca     14340
     cttaaaaact tttgaaattc tttaccaaca aattcttttc ccgcatccgt ttgcaacata     14400
     taaggacagc gatttttatt tttatttaga atttgtttaa atgctttagt cacttctttt     14460
     acggttttgt cacgcaacgg ctcgacaaaa gtatatttac ttaaaacatc aatcactact     14520
     agcaaatatg aataattatc gttgtgactc ttcagagatg acagaactat gagatcggct     14580
     tcccatacgt gatccaatcc caaaacatcg tagtacaaac gtggaaattt ttttcgaata     14640
     ggtttgtgaa gtgtataagt gtcgtgtctt gtcaaccagt ccttgattcg tgatgctggt     14700
     atctttttct tattcgcact tattaaattt ctcgctcctg taaagccaac cgcatgcccc     14760
     ggatcaaaat attgtttctc aatttcttgc atcattatta tgtcatttca accgtaattc     14820
     attccaacgt ttagttatag gagtagatgt tcgagaacta ttttttttat tgctgacgtc     14880
     gttttgcttt ttttgctaca attgtatcca ttattaacga agaatcactt ttactgtttt     14940
     gaaaatcatc gatttcctct tcgtcatcgt cttcgtcttc ttctcgtcga ctttttttcc     15000
     aacttttttc aagtccgttt tcaaaaccac tgcgagacag agaaccattg agattaaaaa     15060
     attcactatt tccaatgaac tccctcggaa tctgggttgt aaaaagtaat tcaccaaact     15120
     gttgtcgacc cgcggcttta atatttttac gtgctctggc tacatcattt accaagtcaa     15180
     ttatgtttga attttttatt ttttctccgt caatttttac aacaccagtt gcactccaac     15240
     ttatccggtt actattattt ttcaaatgat ttaataaaag ttttgtttta tttttgtata     15300
     attttggcac actttcaaga atgtactcat cgctcatttg atctttttca tcacttttac     15360
     catctgctaa atttttctta tcgtcaaacc ggcgtttttc atcgacaaaa aatagatatc     15420
     tctgtaaaac ttgtagaaaa tctctgtact tgtcactatc tgtcgtatat tttcctgaat     15480
     ccaagatctg tcgcatttcg ctatcaagcc gtgaaaattt atctccaggt gtttgaatag     15540
     attcactcgt taattttttc tcctgttctg gaactccttg tacgccggct gctgctggca     15600
     aactatttat tgatgctgtt tttacacttg cttgcatttt ttgtaaactt tcttgaggaa     15660
     tcaaaaccat ttttcgtgct ctttccattt tttatgcgtt tagaaaaaga tccaaaatag     15720
     gtggcaacag aaagcctaga aaactccctc ctttttgtac aataatgcgc tttttactct     15780
     tccaagaatt tttttttcgt tttgtaactt ttgttaaatt acgcagaatt gttttatact     15840
     ttttcagctt atttttttcc gtgacgttta aacatacaac accttttaat acgttcaatg     15900
     cacactcaca aatgtacttt acaagttttt catcggcagt acgcaataac gctagtcgtt     15960
     gttctttatt agaatgtctc aatgcctgca gcaacacaaa atatttttct tcaaaaggcg     16020
     atgcgttatt cttctttcta attaacgctc gactctcacg agatgctcgc ttcgccattg     16080
     tcggattata actgaaccga tattttctct ttacacaaca tttaacttgc tgtactgact     16140
     cgacgaatat ttgggaatat aaacataatg atattcatca tcaggaaata tacaactacg     16200
     gaaacgtaac tcctcaggtg tactctgctt caaatcaata actaaataag aatacggctt     16260
     tatagtacta tcataataag cttcttgcaa aaacttggaa tcttcggggt atagttgacg     16320
     agccaaatgc tgaatctgtg cacggtcccg aggattctta aataaaacca tataattcgc     16380
     attcagcgat atatcgcgct gccctttgtg aaatatattc tgacatatgt aaataaccga     16440
     tgcattacga tgatgacttc ccttactaaa caaatctatt attgtaccat tattcgctga     16500
     ctcgcgcatc aaatcatcta ttattaacaa ttttcgtttt tccggatcgt tcgaatagtc     16560
     ctcgttccgc ggtaatcctt cacgaaattc aatctctaca ttctccactc tataactttc     16620
     ttgccattca ctataataaa atattattct atcaaacttc acattagcca acacatcaag     16680
     atgctttaaa aatctctgta caaacactgt tttacctgcg gaggtaggac cagcgcaaat     16740
     catagtccac gggtgcataa aacaagtatc cattttagca tataatgaca cactaacaaa     16800
     aaaagtacta tacgcggtcc aagacccttc ttgaccgcca cgatccccac cccagggggc     16860
     cccgccggga ctcactcgct cttgcgtcat caccccccac cgcgagaccc aactagactt     16920
     gccccgacga gccatggcgc caccctcccc tcctttacct cccctacctg tctgcctggg     16980
     cttgcccctc tctact                                                     16996
//
ID   Polinton-9_NVi repbase;    DNA;    INV; 17121 BP.
XX
AC   .
XX
DT   02-JUL-2009 (Rel. 14.07, Created)
DT   02-JUL-2009 (Rel. 14.07, Last updated, Version 1)
XX
DE   autonomous Polinton DNA transposon - consensus.
XX
KW   Polinton; DNA transposon; Transposable Element; Polinton-9_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-17121
RA   Bao W. and Jurka J.;
RT   "Polinton DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(7), 1551-1551 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           5453..9370
FT                 /product="Polinton-9_NVi_2p"
FT                 /translation="MISAEYYIFTIDNLRACSRLDANAEDIQRWMDIARAA
FT                 IDSLNTLLEQPTNSVGKIRQLQNFYAHLQSVWRVLEGGLKRGGGLEQQPRV
FT                 TWDDVHSAFQSRIRSGIITNVQHIDIKSFMKDAASLFKEQIELALAEHKSI
FT                 KVNTELAAEYVITXTEEETTAIKYFNTKSQSIFQTTNLDTWFSSNVSQSIE
FT                 RDMEEFQEEGSGWSLRSILHLTVNINKFNPLRGSSYIQLPEPIERKKACVN
FT                 VQNDADDQCFKWAILSALHPAEKNSSRVGKYKAFENELDFTGIEFPVMPKQ
FT                 ISKFERQNEISVNLYMLKKNGGGQFDVSPCHITASKREKHVNLLFVQDHYE
FT                 DEDEQNDDDDDDENVPSLKFHYVWIKYLSRLVSSQLSSRKAKQFICDRCLH
FT                 YFWTADKLAEHERDCTRLNSFKVKLPNETNNRLKFKNYRYKERSPFVVYAD
FT                 FECLLKPVEEDKRAYQEHEAFSVGYYVKCSFDESKSTYKSYRKTAVGEQEA
FT                 AKWFATSLHELGQELEQLYEHPVPMDEMSSEEKREYTWARVCHVCARPFSE
FT                 QDKKVKDHCHFTGKYRGPAHTGCNINYKDSRTIPVIFHNLGGYDSHLFIRE
FT                 ISNAFPGRIVLLPQTKERYISFSKYMGKSEVNFRFIDSIRFMASSLDKLAS
FT                 YLQELKTVEAVFEKDDAYSAQQIDLLKRKGVFPYEYVSTLEKLDETCLPAQ
FT                 SEFHSRLTDSDISSDDYEHAKAVWQAFDIRTLGEYSDLYLKTDVLLLTEIF
FT                 ENFRDNCMKAYGLDAAHYYTTPGLSWDAMLKFTGVELELLTDIEMLLFIER
FT                 GIRGGVSQCCNRYAEANNKYMAENYDPTKESKYLMYFDVNNLYGWAMTQSL
FT                 PCSGFKWIEDIENASFYDVADDSPIGYILEVDLEYPEELHDSHKDLPMCPE
FT                 HRVAPESKQEKLMTTLYDKERYVIHYRSLKQALKHGLRLKKIHRALSFNQK
FT                 AWLKDYIDLNSEMRKRAENEFEKNLFKLMNNAVYGKTMENERKRVDVKLVN
FT                 KWKGRYGAEALIAKPNFHSCSVFDENLVAIQLARTEISITKPIYVGLSVLD
FT                 LSKSLVYRFHYDYMRSRFGDNCKLLYTDTDSLVYEIGGRDVYEIMKEDLHE
FT                 FDTSDYPQDNPFEMPRANKKIVGLMKDECNGKIMTGFVGLRSKMYAVRIQG
FT                 QQMSIKKAKGVKSAVVKKTLTYEDYVHCLLENATISREQCNIRSRLHVLRS
FT                 EKESKVALSPNDDKRYLLEGENTDTLPWGHYKIPENARKRAASDEVEGASK
FT                 RAASDEXEGASKRARVEGXSRVEGSDGANISRAVXGENSFASQH*"
FT   CDS           11195..10341
FT                 /product="Polinton-9_NVi_3p"
FT                 /translation="MSKKAIVEELHRPARRTYTRRKFDVRGLDETWQADLV
FT                 EMQPYSRENKGYRYMLTVIDTFSKFAWAIPVKRKTGEDVAAAMKSILLSEG
FT                 RVPKNLHTDRGKEFYNSTFRNLMKQYEINLYSTYSNLKAAICERFNRTLKN
FT                 AMWKQFSLRGSFKWYDVLSKLLTAYNSRKHRTIGMKPKDVTAANVELVMKK
FT                 FAHEAAAAKQQKPKFKVNDKVRVSKAKNLFEKGYTANWSTEIFTISRVRRT
FT                 KPVTYELRDFRDEPIAGCFYEQELSKTAHPDVYLIEKGLEETR*"
FT   CDS           14114..14800
FT                 /product="Polinton-9_NVi_7p"
FT                 /translation="MDSSLTLSLSGTSSVLEAQYFPPIELSKQKIYVLGLV
FT                 ELLTFNSIPNIDTDNNKFYVGGEEIILPTGSYEIEDIDVYLREALTPKGIS
FT                 FSLKPNNNTLRSVIKCSHPIDFRPRDSIGSLLGFTERILPENVSHSSDRPV
FT                 AILKVNALRVECNITSGAYINGQRVHTIHEFFPAVPPGYKIIEIPSQVIYL
FT                 PITVRSIDQLQVRIVDQDNRLVNFRGEIITIRLHLKQI*"
FT   CDS           12790..12083
FT                 /product="Polinton-9_NVi_5p"
FT                 /translation="MNFREQAVKLPVVNFDTITEHGERRVKRHGALLPDSI
FT                 RAVICGPSNCGKTNSLLALITHPNGLRFENVYVYSKSLNQSKYKFLKELLE
FT                 PIDGMRYFAFSEHEEVVPPDKALPNSIMIFDDVACEKQNNIRAFFCMGRHK
FT                 SVDCFYLCQSYAQVPKHLVRDNVNLLVIFRQDDVNLRHLYADHVNCDMTFA
FT                 QFKELCSSCWADDKHSFLMIDKDSPINEGRYRKGFDCFAINIGRC*"
FT   CDS           join(12042..11488,11539..11198)
FT                 /product="Polinton-9_NVi_4p"
FT                 /translation="MSDSNSQQKHILEQLVKARSAVKRKFDLLKYSKENFE
FT                 RALGETFKPIVDPLQQLVVNSSVAREQKLPAAAANKRIIKSDDDLYTDSTA
FT                 KENKTSQANETIQAAAADTTFESANSDSDNDDGAKSLSLLLRRKNVDKVYG
FT                 VRKDQDGGGGYKLGKSRIXYDGDIITVDDXTFPKTDRIVLWSRLQIXNFPE
FT                 NRPNRALVSAADLKNYQEILELSSVHRRNFRPDEILRYHNSNKNTXTLSLL
FT                 SFYPTTRRPRPQSRXRRRKVAVHCFRRTKSPGEIQKWITFTGTIQINRNIH
FT                 SLNDEL*"
FT   CDS           13197..13754
FT                 /product="Polinton-9_NVi_6p"
FT                 /translation="MKIKSKLGMGMKSRRRMATTKRRPSTRLNAIVKAASR
FT                 AMIKGTNSHEVIASALKGARDAVKKAGGKDNVAIPRVLPLPHKVGGFLSLL
FT                 IPIFAGLSAAGALAGGAAGIAKAVNDSKAAKEQLEETRRHNRAMENISVGK
FT                 GLCLKASKTGLGLHLKPYRGSSFKKKLLRDKLAREGADRRGHREVR*"
FT   CDS           join(3860..4432,4436..5263)
FT                 /product="Polinton-9_NVi_1p"
FT                 /translation="KSERQREKVKLFSTSRERTSSRYTQKMELIIDFQGFQ
FT                 SFKGEFIAKEIGIMPSRFSDENAEPQSILLSPPICCTKHIAAEYLPTNQWL
FT                 TNNFHGIGWDDGWVPFLRMEEELTDRVAYATKVYVKGAEKKGIMKLLCPNV
FT                 NVVDLTDYGCPPLRELCSGHFVDCPDHKNCSNPVCAKLNVKVLAEWLEKYW
FT                 MIYVFDIIKFEKKICRFHDKNISKNVRNNCLRARTFLAHLLLAIRRTSRAI
FT                 ASHYSYSSQTSSMWAYSVFSLPQSVPDLCTPTAAVASSISEKLRNFYHYYE
FT                 DNDVDYVLDLQSFKVGSHFIHKELAIASLEGDASPIDVYLFEPPFEWTSLS
FT                 SEQRRENSWIERKLIGIPWSAGTFGYDDVVKILEKSLKNARNVYVKGFEKK
FT                 RWLEERLAPSTAVRVIDMEVLGCPSLKHFPKTGDCENHPLLSSDPQCAGRN
FT                 VHALRSWMQTYRGVFGEDVCY*"
FT   CDS           join(14790..15551,15555..16205)
FT                 /product="Polinton-9_NVi_8p"
FT                 /translation="NRYNGYRLQQQQSRSWLYKQADETQRDQSSANRQSAN
FT                 TTKRRLPEESQIQSTSSWKIIMQEILSIQAPVAFDESVAHYELHAHQPYTP
FT                 SGYNNSDEIRIAIQHQDLYVLPSRSSLHIHGKLTKADGSAVERTRLVNNAI
FT                 CHMFEEIRYEMNAVEIDRSKNVGLSTLMKGWISFNPNQSSMLENAGWLDVE
FT                 ETFQVTNNAGYFDINIPLSMILGFAEDYRKIVVNVKHELILTRSRSDLNAV
FT                 TQTAGRNAAGQDVEDINIGLLKIEWLMPYVVASNVQKIRLLQSVEKNKPIS
FT                 MSFRSWELYEYPLLPVSTKHVWTVKTSNQLEKPRFVVLGLQTNRKSLRTAN
FT                 ASRFDHCNLSNVKLFLNSQYYPYGNLNLDINRNQYSVLYDMYANFQNAYYD
FT                 KNPKPLLKKADFITHIPLFVIDCSKQSETLKSAPVDVRLEFESRDNFLANT
FT                 SAYCLILHDRIXQYSPVSGDVKKLV*"
XX
SQ   Sequence 17121 BP; 4645 A; 4213 C; 4272 G; 3976 T; 15 other;
     agtaggtaag ctgtgcgggt accagctcat gcgggtccta gctcaccccc actctttgcg        60
     gctaccagct cactcagtcc cctctccgag cggctaccag ctcacccagg gtaccccctc       120
     agccacgctc gcgtaataaa gagcgcactc ttgcgtcaaa gtgtcatttc gtgtcgagca       180
     gcatcatcat gagagtgggc gacaagagga gcgaaaacgc acgaggcagc tatacagcag       240
     cagtcgaagt tagccagcaa acggctacga tagagaggcc gccccttaaa gagcctaagg       300
     aagcgcgacg ctggtcgagg ccggaacaaa atattacaat cagtccttat aaggactaga       360
     agtttataaa acgtagtaat gaaatacttg tgtgtgtgtg agagagagag agagagagag       420
     agagagagag agagagagag agagagagag agagagagag aatgaaacag ttcttttcca       480
     taaccgcggc gccgcgattt ttaccgcgag aatctttacc gagcaagagc gcgctaggcg       540
     gcaaatacgc gcgcacgaac cgagcagcaa agattttacg gagagagaac gtttgagaat       600
     ctttaccgcg cgcgctatgc tgaaagagcg cgctattggc aaagatgcgc acgcagtaaa       660
     gatttcttac agcgagaaag ttctctctgc cgcgcgcgaa agagcgcgcg tacgcccact       720
     cctcagcgtg cgcgctattg gttcggcaca gatgcgcgcg aaggcataag acagagcgcg       780
     ctttgacgag cggtatcagt cattcatcgt tcgtcatggc agaagcagca gcagcaaagc       840
     aacggcggcg gcagattccc ctatctcgcg agctgcgcag cgggactaga gtcgtatttt       900
     cgacagcgga cgacagcagg agcaataggc tttctcaact acctcgcgcg tggagacaaa       960
     gttccattta ctacggagta gcgagccgac gatgacagca gcggtgacct tcgtcctaag      1020
     acggcacaac taaccaatca gtctttttga ggactacaaa aaattttaac gtagaaataa      1080
     aagacttgtg tgagaatgaa agtgagaatg aaacagttct tttcagaact atagcgtagg      1140
     atagaacgcg ccgcgatgag cagtcaacgg cagatgtccc ccactatctt gccagccgca      1200
     acataaagag cgagtgcacg ggacaagagc cccaacagcg gcggcggcag attcttccac      1260
     tctcttacga gtcgcgcagc ggggactaga gccacaaaga tgaagcgacg gcggcagcaa      1320
     ccactcagtt ccctcactat ctcgcgagtc gcgctctctc aataaaacgg gagcgcgcgc      1380
     ggactagaga tacattctta acggtggtgg cgagcagacg accgcggtag agagagagag      1440
     agaatcatcg caggcggaga tgcgagcggc cggctcttac cagcgcaatg cgtctcatcg      1500
     acccaaggtc ccatgaaatt tccatcagta cttttcagga ctagaaatat aattcaaacg      1560
     tgaaacaaac tgtctttctc tctctctctc tctctctctc tctctctctc tctctctctc      1620
     tctctctctc tctctcatca gctcgcacgc gaacgagagt tttaaagaag cggtagtgag      1680
     cagtttactg cgactcgacg tctcataatt tttcaaacag tccttttcag gactataata      1740
     tcatgtgtta tactatgctc tctcgagagg ttcaattctt ttcaaaaaaa cgatagcgcg      1800
     atatatagcc gcagcgagaa tctttgccga gcactgaaag agcgcgcaaa gatgcacgcg      1860
     ccgcagtaaa aatttcttac agwatgttcg agaatcttta ccgcgcgcta ttggcaaaga      1920
     tgcgcgcgca gtaaagattt cttacagcga gaacgttctc tctgccgcac gcgaaagagc      1980
     gcgcgtaccc ccactcctca gcgcgcgcgc tattggctcg gcacagatcc gcgcaaaggc      2040
     ataagacaga gtgcgctttt acgagcgcta tcagtcattc attgttagtc atgacagaag      2100
     catcagcagc agcagcagca gcagtagcaa gtcgcggcgg agatggcagt cagtagtccg      2160
     tagtataacc ggcttcgaaa gaaccattcg ccgagacgcc gagaaatgca cataaggctc      2220
     gacggcgaat gccgaaacct gctcctcgag tcgaagaaat tcactggacg ccttcagtcc      2280
     atgaaattcg taacaggaca atcgagatag agcgtcagag agcacctcgc agccgcagca      2340
     aggagcggca gcaagagttg cggaagctca cgcgcaagcc acgctacgtg agcccgaagc      2400
     gaaagccatg agcgacgatg aatatgcaca atcggccctt tacagggcca ccaaaaattt      2460
     tcaaaacgta gaaaacaaac tgtttccctt tctcctctcc ctctctctct ctctctagat      2520
     agttaagaat ggctctagaa aaataaggct cattcgatcg tcaacgttcg agatgtgctg      2580
     tccacgaggc ataagcgcag tcgaaagatc gacgagtgag atcaagcgag aatttcaaat      2640
     gatctgcatc ttagcgatga tgcaagttca tttggaagcg ctcgctcaca ttgaacgaga      2700
     cgacattcgt gatcgtgagg aaatgtttga ggtgttgtac cacattcaaa ctttctatct      2760
     cgacatgaac gaggacgacg acgacgacga cagttagcag cagcagtaaa aaaaagcaaa      2820
     tcggcccttt tcagggccac caaaaatatt aaacgtagaa tattctatta ttcccctcca      2880
     ctcttctacg agcatacact tatattcagc gatgacagct gcatactgtc attcgctttt      2940
     tgactgccaa catgtgctgt ccaagacgat tgagcatcag agagcgaaag gaacgtcaag      3000
     agcttgctag tcttaaactc gcgatgattg tggaaattgt gagaatttac tcggaagctg      3060
     ctgctctgct agctcgacat cgagcctcgc caaactcgag tcgagttaga acattctggg      3120
     atctcatcga ccagagattt ttccagtagg aaacaatcgg cccttttcag ggccactaaa      3180
     ttctcacaac gtagaatacg actatatgcc cccaccacca ccaacacctt aaagtataag      3240
     tatctgcgcg agctcgagag agagctcatt cttcgcagac atgccgagac gacgacgacg      3300
     agtcatcaga ccctgcgact ctccaagagc acgaccgcga caagagcaag attcgacgag      3360
     acgacgactc ttcacgacat ctgatcggga ggcgtcagtg gagatcgaga ggcctcattc      3420
     accgttccta gcggcttctt ggctcggtac gccaagagta gagtcaccgc caccgactga      3480
     ctcatcggcg tcctcgtcgt catcgtcgtc gtcatcctct tcatagagtc tctataatat      3540
     ttgaaaaaat cagtcctttt aaggactaca aatctatctt aacgtaagac agtgactatt      3600
     tttttaacca tctgcgtgac cttgaaaatg cttgaagaag aatatgttgg tagtgcgagg      3660
     ccgtggatac gaaatcccac gagacctaag aaacttccaa cgaattctct cagacctcct      3720
     tctcgccaag taaaagagaa ggagtcgcgg aaggtgccgg tgctgccgct ctcccctccc      3780
     tctcatggtc tgtggatcat agaataatta cccccaccaa tcgttggact gttcgccatt      3840
     tttgtaattt aatgtataaa agtcggagcg gcagcgcgaa aaagtcaaac tattctcaac      3900
     ttctcgagag agaacatcra gtagatacac gcagaaaatg gagcttatta ttgacttcca      3960
     aggctttcag tctttcaaag gcgaatttat cgctaaagaa atcggcataa tgccaagtcg      4020
     ctttagcgac gaaaatgccg agccgcaaag tattttgctg agtccgccga tatgctgcac      4080
     gaagcacatt gcggcagagt atctgccgac aaaccagtgg ttgaccaaca acttccacgg      4140
     catcggctgg gacgatggat gggtcccctt cttgcggatg gaagaggagc tcaccgatcg      4200
     tgtggcatat gccaccaaag tatacgtcaa gggtgcggag aagaaaggga tcatgaagct      4260
     gctatgcccg aacgtcaacg ttgtggacct gaccgactat ggctgtccac cactccgaga      4320
     attatgttca ggccacttcg ttgactgccc ggaccacaag aattgctcga acccggtttg      4380
     cgctaagttg aatgtaaaag tcctcgcaga gtggctcgaa aaatattgga tgtagatata      4440
     tgtatttgat ataataaaat ttgaaaaaaa aatctgtcgt tttcacgaca aaaatattag      4500
     taaaaacgta cggaataact gtttgcgcgc gcgcaccttt cttgcgcatc tccttctcgc      4560
     tataagaagg acgtcgcgag cgatagctag tcattattcg tatagctctc aaacaagcag      4620
     tatgtgggcc tacagcgtgt tctcgctacc tcagagcgtc cccgatctct gcacgccgac      4680
     agcagccgtg gcgagcagca tctccgagaa gttgcgaaac ttctaccact actacgagga      4740
     caacgacgtc gactacgttc tggatctgca gagtttcaag gtcggcagcc acttcatcca      4800
     caaggagctc gctatagcca gtctcgaggg tgatgcatcg ccgatcgacg tatacctctt      4860
     cgagccgccg ttcgagtgga ctagcttgag cagcgagcaa cgtcgtgaga acagctggat      4920
     cgagaggaag ttgattggaa tcccttggtc cgctggaaca ttcggctacg acgacgtagt      4980
     gaagattctc gagaaaagtc tcaagaatgc ccggaacgtc tacgtcaagg gattcgagaa      5040
     gaagaggtgg ttggaggaga ggttagcgcc gtcgactgct gtacgagtca tcgatatgga      5100
     ggtcttgggt tgtccatcgc tcaagcattt ccccaagaca ggcgactgcg agaatcatcc      5160
     tctgctctcc tccgatcctc aatgtgctgg acgaaatgtt cacgcattga gatcgtggat      5220
     gcagacgtat cgcggtgtct ttggagaaga tgtgtgttac taatatgtac tttcttttga      5280
     aataaaatca taaaaactgt cgttttcacg gcaaaaaaaa ataacgtaga acaagcttat      5340
     acttgtcacc tctccagcgc gtgcgcaggc tgacggcgtg tatttaagtc gtcgcgagcg      5400
     ctagcgctca ttctgaagta ttcattcttg aagctatttc cgaagcgaca acatgatctc      5460
     cgcggagtat tatattttca caatcgacaa tctgagagcg tgctctcgtc ttgacgcgaa      5520
     cgccgaggac atccagcgtt ggatggatat tgcgcgagca gccatcgatt cgctgaacac      5580
     tctgctagag cagccaacga attccgttgg caaaattcgg cagctgcaga acttttacgc      5640
     tcatctccag agcgtttgga gagttctcga aggcggtttg aagcgaggag gtggcctgga      5700
     gcagcagccg cgagtcacct gggatgatgt gcattcggct tttcaaagcc gcatcagaag      5760
     tggcatcatc acgaacgtgc agcacatcga catcaagagc ttcatgaagg acgctgctag      5820
     cctcttcaaa gagcagatcg agctcgcttt ggccgaacac aagtcgatca aggtcaatac      5880
     cgagctcgcc gccgagtacg tcatcaccrc caccgaggag gagacgactg cgatcaagta      5940
     ttttaatacg aaatcacagt cgatcttcca gactacgaat ctcgatacgt ggttctcgag      6000
     caacgtaagt caatccatcg aaagagacat ggaggagttt caagaggagg gttcgggctg      6060
     gtcgcttcgt tccattctac atctcacggt gaatatcaac aagttcaatc cgttgcgagg      6120
     cagctcctac atccaactcc cggaaccgat cgagaggaag aaagcctgtg tcaacgtgca      6180
     aaacgacgca gacgaccagt gtttcaagtg ggccatactc tcagccttgc atccggctga      6240
     gaaaaattcg agccgcgttg gcaagtacaa agccttcgag aacgagctcg atttcacrgg      6300
     tatcgagttt ccggtcatgc ctaagcagat ctcaaagttc gagagacaga acgagatctc      6360
     ggtcaatctt tacatgctga agaagaatgg cggaggacag tttgacgtgt ctccctgtca      6420
     cattacggct tcgaagagag agaagcacgt caatcttctc ttcgtacaag accattacga      6480
     ggacgaggat gagcagaacg acgacgacga tgacgatgag aacgtaccct ctctgaaatt      6540
     ccactacgtg tggataaaat atttatcgcg attggtctcg tctcagctga gctctcgcaa      6600
     agcgaagcaa ttcatttgcg atcgttgtct gcactatttt tggactgccg acaaactagc      6660
     ggagcacgag agagactgca cgaggctcaa cagcttcaaa gtcaaactgc cgaacgagac      6720
     gaataatagg ctgaaattta aaaattatcg ctacaaggag cgttcaccat tcgtagtgta      6780
     cgctgacttt gaatgcctgc tcaaacctgt cgaggaagac aagcgcgctt atcaggagca      6840
     cgaagcgttc agcgtcggct actacgtaaa gtgcagcttc gacgaatcca agtcgacgta      6900
     caagagctac aggaagacgg ccgttggtga acaggaggca gctaaatggt tcgctacgag      6960
     tcttcacgag ctcggacaag aactcgagca gctctacgag catccagtac ccatggatga      7020
     gatgagctcg gaagaaaaac gcgaatacac ctgggctaga gtttgtcacg tctgcgctcg      7080
     acctttcagc gagcaggaca agaaagtgaa ggatcattgc cacttcacgg gaaagtatcg      7140
     cggtccggct cacaccggct gcaatataaa ttacaaggac tcgcggacga ttccagttat      7200
     ttttcacaac ttgggcggct acgactctca tctcttcatc agggagatct ccaacgcctt      7260
     tccgggccgt atcgtgctgt tgccgcagac gaaagagcgt tacatctctt tcagcaaata      7320
     catgggaaag agcgaggtga actttcgatt catcgactct attcgcttca tggcctcatc      7380
     cttggataag ctggcatcct atttgcaaga gctgaagact gtcgaggcgg tgttcgagaa      7440
     ggatgacgct tacagcgcgc aacagatcga tctgctgaaa cgtaagggag tgtttcctta      7500
     cgagtacgtg tccacgctgg aaaaactcga cgagacttgt ctgccagctc agtcggaatt      7560
     tcacagccgc ctgactgaca gcgacatctc cagcgacgac tacgagcacg cgaaggcggt      7620
     atggcaggct ttcgacattc ggacgctcgg cgagtactcg gatctgtatc tcaagacaga      7680
     tgtgctacta ctcaccgaga tctttgagaa ttttcgagac aactgcatga aggcttacgg      7740
     tctggatgcg gctcactact acacgacacc cggtctctcg tgggacgcga tgctcaagtt      7800
     tacgggcgta gaactcgagc tgctcaccga tatcgagatg ctactcttta tcgagcgagg      7860
     cattcgcgga ggtgtgagtc agtgctgtaa tcgctacgca gaggccaaca ataagtatat      7920
     ggccgagaac tacgatccga caaaggagtc caagtacttg atgtactttg acgttaataa      7980
     cctctacggg tgggccatga cgcaatccct gccttgctcc ggcttcaagt ggatcgagga      8040
     catcgagaac gcgagtttct acgacgtggc cgacgacagt cccatcggct acatcctcga      8100
     ggtggatctg gaatacccgg aggaactcca cgactctcac aaggatttgc caatgtgtcc      8160
     ggagcacagg gtagcgccag agtcgaagca agagaagctg atgactacgc tctacgacaa      8220
     agagcgttac gtcattcact acagaagtct caagcaggcg ctgaagcatg gtctccgctt      8280
     gaagaaaatt cacagagccc tgagtttcaa tcagaaggcc tggctcaagg actacatcga      8340
     tctcaacagc gagatgcgca agagagccga gaacgagttc gagaagaatt tgttcaaact      8400
     catgaacaac gcggtctacg gcaaaacgat ggaaaacgag cggaagcgcg tcgatgtgaa      8460
     gctcgtgaat aagtggaaag gtcgctacgg cgctgaggct ctcatagcta agccgaattt      8520
     ccacagctgc tccgtgttcg acgagaatct cgtagcgatt caactggctc gcaccgagat      8580
     cagcatcacc aagccaatct acgtgggact cagcgttctc gatctctcca agtcgctcgt      8640
     gtacagattc cactacgact acatgaggag tcgattcggc gacaactgca agctgctcta      8700
     taccgatacg gatagcttgg tgtacgagat cggtggccgc gacgtctacg aratcatgaa      8760
     ggaggatctc cacgagttcg acacgtcgga ctatccgcaa gacaatccgt tcgagatgcc      8820
     gcgcgccaat aagaagatcg tcggcctcat gaaggacgaa tgcaatggga agatcatgac      8880
     aggattcgtc ggcttgcgca gcaagatgta cgccgttcgg attcaaggtc agcagatgtc      8940
     catcaagaag gctaaaggcg tgaagagtgc tgtggtgaag aagacgctca cctacgagga      9000
     ctacgtacac tgcctactcg agaacgctac gatctcgaga gagcagtgta atattcgctc      9060
     gcgacttcac gttctcaggt cggagaaaga gagcaaggtg gctctaagtc ccaacgacga      9120
     caagcgatat ttgctcgaag gggaaaacac cgatacgctt ccttggggtc attacaaaat      9180
     ccccgaaaac gctcgcaaaa gagcggcttc tgacgaggta gagggcgcca gcaagagagc      9240
     ggcttctgac gagktagagg gcgccagcaa gagagcgcga gtggaggggg astcgcgagt      9300
     ggaggggagc gatggagcga atataagtcg agccgtcgyc ggtgagaatt cattcgcttc      9360
     gcagcactag tagcagcagt agtaagctac atataccagc aagtaagaaa gatcagcagc      9420
     agcagcagta aaaatggatc tacaaaagct gaacgaagtc gccaagacta aggagtttct      9480
     cccgacgaag aagatcgccg agctcgagga aggccgagtc tacaaggtca ccaagctcag      9540
     gatggtcaac acgagatttg gaaggagaac cgtggcggag ctcgacgatg ctgtgcaggc      9600
     gtttctaccc caacgcttcg ccttggcttt cgacaaggat gaggagttct tcaacagaac      9660
     ggcggaagaa gctagcagct ccaagctatt cctaaccaag aacgcaggca gcagcaacat      9720
     tgcattctcc tcttctccct gaacattgta ataataataa tattgtttga aataaaattg      9780
     aaaaaatgtc gttttaacga caaaaaaata acgtagtcac gaggaacaaa caaaatattt      9840
     ggagaggggc gagctgtgaa tataagccag gcatctgcct actctgaatc attagctcaa      9900
     cagtcgcaga acatycaaca acatgctcgc cgacaaaacg atagccgact tggaggaaga      9960
     tgtaacgtac atggttacag agctccaact catcagcacc gagtcaggaa cgcaagctgt     10020
     ggctcgtctg aacgactcat ctcagcttct tctaccacaa cgtttcgccg tagccttcga     10080
     gaacgaggag gaatacttct acatactgac agctgcagct aatacctaca ggctattcgt     10140
     cactaagaag cagaacggaa gccttgaatt ttcttttctt taaacatgta tatgtattta     10200
     ttgtgaataa actatgtgtc gttttcacga caaatacaaa gagaaataac gaggaacaaa     10260
     atattttttc cactgactga gatttgtcga tccacgtatt gtgagtgttg tcaaatccaa     10320
     gccaatttaa gaatacctcc ttacctcgtc tcttcaagac ccttctcgat gagatagacg     10380
     tccggatggg ccgtcttcga gagttcttgc tcgtaaaagc agccagcgat aggctcatcg     10440
     cgaaagtctc ttagttcata agtcactggc ttcgtgcgtc tgactcgaga gatagtaaat     10500
     atctcggtcg accagttggc cgtatagcct ttttcgaaca aatttttcgc tttgctcact     10560
     cggactttgt cattgacttt gaactttggt ttctgctgct ttgctgctgc tgcctcgtgt     10620
     gcaaactttt tcatgactag ctcgacattg gcagccgtca catccttagg cttcataccg     10680
     atagtacgat gcttgcgact gttgtaggca gtcaggagtt tactcaacac atcgtaccat     10740
     ttgaagctgc cgcgtaaact aaactgcttc cacatggcat tttttaacgt acgattgaag     10800
     cgttcgcaga tcgcagcctt gagattacta tacgtcgagt acagattaat ctcgtactgt     10860
     ttcatgagat tccgaaaggt ggagttgtaa aattctttgc cacgatccgt atgcaagttt     10920
     ttaggcactc gaccttccga cagcagtatg cttttcatag cagctgctac gtcttcgccg     10980
     gtttttctct tcacgggaat ggcccaagcg aatttcgaaa acgtgtctat gacagtgagc     11040
     atatatctgt agcctttgtt ctctcgcgaa taaggttgca tctcaaccaa atcagcttgc     11100
     caagtctcgt ctaatccacg aacatcgaat tttcgacgcg tgtacgtacg acgagctggc     11160
     ctatgtagct cctcaacgat tgctttcttc gacatgttca cagctcgtca ttyagagagt     11220
     gaatgtttcg attgatttgg atcgtcccag taaacgtaat ccatttttgt atctctcctg     11280
     gcgattttgt acggcggaag cagtgtaccg ctacttttct tcttcttytt cgactttgag     11340
     ggcgaggacg acgtgttgtt gggtagaaag agaggagcga taaagtcrtc gtatttttat     11400
     tactattgtg ataacgcaaa atctcatcgg ggcggaaatt cctcctgtgc acgctcgaca     11460
     attcgagtat ttcttgataa ttttttagat ctgcagccga gaccagagca cgattcggtc     11520
     ggttttcggg aaagttstat catcgactgt aatgatatct ccatcatact ytattcttga     11580
     tttgccgagt ttatatccgc cgccgccgtc ttggtccttc cgcacgccgt aaaccttatc     11640
     cacattttta cgacgcaaaa gaagcgaaag cgattttgct ccgtcgtcgt tgtcgctgtc     11700
     gctgtttgcc gattcgaacg tcgtatccgc agcagcagcc tgtatagttt cattcgcttg     11760
     agaagtctta ttctccttag cagtagaatc agtatacaag tcatcgtcag attttattat     11820
     tcgtttattt gctgcagcag caggcaattt ttgctctcta gcaactgaag aattgaccac     11880
     taactgttgc aagggatcga cgatcggctt gaaagtctca cccaacgctc tctcaaagtt     11940
     ttctttactg tatttcaaca gatcaaactt tcgcttaact gcgcttcgcg ctttcacgag     12000
     ctgctcgagt atatgcttct gctgactatt actatcagac atgttgacat atcaacggtt     12060
     agtgatagac tgttatagat cgctaacatc gtcctatatt tatagcaaag cagtcgaaac     12120
     cctttcgata acgaccctcg ttgatcggac tatctttgtc gatcatgaga aaggagtgct     12180
     tatcgtcggc ccagcagctc gagcataatt ccttgaactg cgcgaatgtc atgtcgcaat     12240
     tgacgtgatc tgcatacaag tggcgtaaat tcacgtcatc ttgtcgaaat ataaccagca     12300
     aattgacatt atctctcacc aagtgcttcg gcacttgagc gtacgactga cagaggtaga     12360
     agcagtcgac gctcttgtgt cgacccatgc agaaaaatgc gcgtatgtta ttttgcttct     12420
     cgcatgcgac gtcgtcgaat atcatgatcg aattgggtag tgccttgtca ggcgggacta     12480
     cttcctcgtg ctcgctgaaa gcaaagtagc gcataccatc gatcggttcc agcaactctt     12540
     tcaaaaattt atatttcgac tgattcagcg acttggagta gacgtacaca ttctcgaatc     12600
     taagtccgtt cggatgcgtt atgagagcga gaaggctatt ggttttaccg cagtttgatg     12660
     gtccgcaaat gactgcgcgt atactgtcgg gaagcagagc tccgtgacgt ttcacgcgtc     12720
     tctccccgtg ctcggtgata gtgtcaaagt tgaccacggg gagcttcaca gcctgctctc     12780
     tgaagttcat tctctcaaat ctcggctaag actgatcgat ttcctataaa taggctgctt     12840
     ttatagccgc ctgcatcagt tatcattgga ccttcgtgga gtaatgatcg tacacattga     12900
     gagcggacgt ggtttggtga acaaagtgct caacaaaatt cctgttgaac ttcatttgcc     12960
     gggctatcag tactgcggac caggaacaaa gttagctaaa cgtctagcta gaggagatcg     13020
     aggcataaat cctctcgatc aagcttgcaa agagcacgat atagcgtact cgcagaatcg     13080
     cgagaacgta gaggctagaa atcaggccga tagagtatta gccgacaaag cttggcagag     13140
     agtcagcctg acgcgaaatt agatgagaaa tttccgctta cgccgtatcg aaagcgatga     13200
     aaataaaatc gaaattggga atgggtatga agagtaggag gagaatggct acgacgaaga     13260
     ggagaccatc cacgaggctg aacgctatag tgaaggcagc ctcgagagcg atgatcaagg     13320
     gcactaatag tcacgaagtc atcgcatcgg ctttgaaagg agctcgcgat gccgtgaaaa     13380
     aggctggtgg caaagataac gtggccatac cacgagtcct gccactacct cataaagtag     13440
     gtggctttct ttctctcctc atacccattt ttgctggact gagtgcggcg ggtgctttgg     13500
     ctggaggagc tgctggcatt gccaaggcgg tcaacgactc caaggctgcg aaagagcagc     13560
     tagaggagac tcgtcgacat aacagagcga tggaaaatat cagcgtgggt aagggactct     13620
     gtctgaaagc cagcaagact ggattgggcc ttcatctcaa gccctatcgc ggaagcagtt     13680
     ttaaaaaaaa acttcttcga gataagcttg cccgagaggg cgctgacaga cgtggacatc     13740
     gtgaagtacg ctaaaatctt gaaaattcca tattttcgag gtgtattcat gcgtaacgcg     13800
     atgcctgcga gtggtccacg aaagcgcgaa tcagccgttg tgaacttgga cgatgcgagc     13860
     gggcctggaa ctcactgggt agcgtatcgc aaacgagacg acaacgtcgt ttacttcgat     13920
     agctttggag atctacagcc tcccttggac ttgatgctgt atttgggagt gaacgagatc     13980
     cagtacaatc acgagagata tcaagattac aacaccttca actgcggaca tctctgtttg     14040
     cagttcttga gtaataagct atataagagg cgactgccgt gaatgcacat tcattcagca     14100
     ttcgacagtc agtatggata gctcactcac tctgagtctc tccggaactt catctgtact     14160
     cgaagctcag tactttccac cgattgagct ctcgaagcaa aagatctacg ttctcggtct     14220
     agttgaactg ctcacgttca actccattcc caatatcgac acggataata acaagttcta     14280
     cgtcggtggg gaagaaatta tcttacctac ggggagctac gaaatcgagg atatcgacgt     14340
     ttaccttcgc gaagctttga ctcccaaggg tatatcgttc agtctcaagc ccaacaataa     14400
     tacgcttcgt agcgtgataa agtgcagtca tccgatcgac tttcgtccgc gagactcgat     14460
     cggctctctg ctgggcttca ccgagcgcat cttaccggag aacgtgagcc acagttcgga     14520
     tagacctgta gctattctaa aagtcaacgc tctgcgagtc gagtgtaaca tcacctcggg     14580
     tgcctatata aacgggcagc gcgtgcacac tattcacgag ttctttcctg ctgtacctcc     14640
     aggatacaag atcatcgaaa ttccctcgca agtcatctat ctgccaatca ctgtgagaag     14700
     catagatcag cttcaagtgc gcatagtcga tcaagacaat cgcttggtta attttcgcgg     14760
     agagataatc accatcagat tacacctaaa acagatataa tgggtatcgt ttacaacagc     14820
     agcaaagtcg gagctggcta tataagcaag ccgacgagac gcagcgagat cagtcgtcag     14880
     cgaatcgcca aagcgctaac acgacaaaac gtagacttcc tgaagagtct caaattcaga     14940
     gtacgtcctc gtggaaaata ataatgcagg agattctgag tatacaggcg ccggtggcct     15000
     tcgacgagtc tgtagctcat tacgagttac acgctcatca gccctacacg ccatctggat     15060
     acaacaacag cgacgagata cgcatagcca ttcaacatca agacctatac gttcttccct     15120
     cgcgcagctc gctgcacatt cacggcaaac tgacgaaagc cgacggcagc gccgtggagc     15180
     gcacgcgatt ggtcaacaac gcgatatgcc acatgttcga ggagattcga tacgaaatga     15240
     atgccgtgga aatcgacaga tctaaaaatg tcggtcttag cacgctcatg aaaggctgga     15300
     tttctttcaa tcccaatcag agctcgatgc tcgaaaatgc tggctggtta gacgtcgagg     15360
     agacgtttca agtgaccaac aatgccggct atttcgatat caacataccg ctcagtatga     15420
     tactcggctt tgccgaggac tatcgcaaaa tcgtggtcaa cgtcaagcac gagctcatac     15480
     tgacgagatc gcgaagcgat ctgaacgccg tgacgcagac tgctggcaga aacgcggctg     15540
     gacaagacgt ttaagaggac atcaatattg gactattgaa aatcgagtgg ctcatgccct     15600
     acgttgtcgc gtcgaacgtg cagaaaattc gtctgctgca gtccgtggag aagaacaagc     15660
     cgatcagcat gagttttcgc agctgggagt tgtacgagta tccgctcctt cccgtctcca     15720
     cgaagcacgt gtggacggtg aaaacgtcga atcagctgga gaagccgcga ttcgtcgttc     15780
     tcggtctgca gactaatcga aagagtctga gaactgcgaa cgccagtcgc ttcgatcact     15840
     gcaatctcag caacgtcaaa ctcttcctca attcccagta ctatccctat ggaaatttga     15900
     atctcgatat caatcgaaat cagtactctg tactgtacga tatgtacgca aatttccaga     15960
     acgcctacta cgacaagaat cccaagccgc tgctgaagaa ggcggacttt atcacgcaca     16020
     tacctctctt cgttatcgac tgctccaagc agagcgaaac gttgaagagc gcgcctgtcg     16080
     acgttcgtct ggaattcgag tcacgtgata attttctcgc caacacttcg gcctactgtc     16140
     tcatcctgca cgatcgtatc rttcagtata gtcctgtcag cggagacgtg aagaagctcg     16200
     tgtaatggag tacgctgtgg atatgcaagg cttcaagcag cctggaaacg atttcgttct     16260
     caaggagctg gctattgtct cgctcacgga cgagagcgag cctctagtcc tgctgtttcg     16320
     agaaccgttt ccctggagaa gactcacgga aaagtatagg aaggagaatg agtggctaga     16380
     gcgcagccat cacgggctat cctggtcatc gggcaacata gcctacaccg aggtcggcaa     16440
     gctgctccgg gaagctcttc gagacgccag caagatcttc gtcagaggag aactacgccg     16500
     acgatggcta gaacgtttcg atctcaccgc cactgatatc tgcgattacg gatatccctc     16560
     ggaagatttg ccgaaaatcg tgactgtatg caccaatcac aatggagcct acaagtctac     16620
     ctgcgctctg caaaatgtca aaatcatgaa actctactat ctcaccaacg ttcacatgga     16680
     gtgggaagat gtttcggaga ctgaggagta cgcttaatat gcgagcgact gaaaagtgcg     16740
     gcggtgggtc gagagtaaga tctcggcctg ctgtactggg ggtaccgggt tcaaatctcg     16800
     gccgcggata aattttttgt gatattccgc tgggtaagct gggacccgca ctggcttgcc     16860
     gactacgagc gcgcgctctt tattaccggc tggcagagct gggacccgca tactgtctga     16920
     ctcgccgact gacactctga cgcgagagcg cgctctttat tacgcgaccg aaactggcaa     16980
     aaaggggggg taccctgggt gagctggtag ccgctagaag tgggagctgg tagccgctcg     17040
     gagagggagt gagctggtag ccgcaaagag tgggggtgag ctgggacccg catgagctgg     17100
     tacccgcata gcttacctac t                                               17121
//
ID   Polinton1N_TCa repbase;    DNA;    INV; 4078 BP.
XX
AC   ChLG8;
XX
DT   09-MAR-2008 (Rel. 13.03, Created)
DT   09-MAR-2008 (Rel. 13.03, Last updated, Version 1)
XX
DE   Putative non-autonomous Polinton-type element.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Polinton1N_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4078
RA   Jurka J.;
RT   "Putative non-autonomous Polinton-type element from Tribolium
RT   castaneum.";
RL   Repbase Reports 8(3), 373-373 (2008).
XX
DR   EMBL/GenBank/DDBJ; ChLG8; Positions 12143371 12147448.
XX
CC
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1792..2631
FT                 /product="Polinton1N_TCa_1p"
FT                 /translation="MESDVDNLWRIDEMPVTDESTKSYTYNEIRESNINMK
FT                 ELEQYTLETNISGWKHLSGAYIFVKSKIKNNPNNYATISNNGINDFDYVRL
FT                 FYEEVLIEETNYVGVATLISNLIEFSGDVSDTSASQLCWYPDTADSADTSQ
FT                 YKYEAQDKSVKFKDLNVDIKTIISKITNNSAFNKGYLERWLLTKDEKTITK
FT                 FIPLSKIYRFVRDCNKVLNGKIRIELRKNRVKIDKTLEKNRYIRFGDISRI
FT                 SNPETTSIMLELECGETVKLIFGAAQAKEDFYEAITVIR"
XX
SQ   Sequence 4078 BP; 1441 A; 673 C; 685 G; 1279 T; 0 other;
     actactaagt gagccccttg aggacacagc actttttaag gtaaaacacc tcgattttca        60
     aggtagatca aaattctaaa aggtagatca aaaagtctaa aatttgaagg tacgaagaca       120
     gccccttcag aacactcaat aatttcaagc aaaacaccct gcttttcaag ggtaaacaaa       180
     aaagcaaaaa aaaaaaacgt taaaacacca ccgattttcc aggtagttaa aaaaacatca       240
     aataatcata aaaacacccc gattttcacg ggtgaacaga aaagcaaaga aaatcgttat       300
     aatatcccga ttttcaaggg taagcagaaa agcaaaaaaa atcgtgaaaa caccccgatt       360
     ttccaggtat ttaaaaaagt aaaaaatatc aagcaaaata acccgatttg caagagtaaa       420
     cagaaaagca aaaaaatcgt gaaaacaccc ccgattttca ggggttaaca gaaaagcaaa       480
     gaaaatcata aaacctcctc ggttttactc cgttatagta ataagaaagg attaggataa       540
     ttatataact acttatatca aaaatagata aagaagataa gagttatctc aatcagttgt       600
     gcgaattaga aaaaaataat gaaaattcgg tgtataccca cacggtatac acccctgaaa       660
     ttggtgaata tatctattaa aatcgaggaa aagtttacca ctcgttcttg acgaataaaa       720
     aacgcaatta taagaattcg ctctgctcat gagtggacta cgtccacgga ttgtcttttt       780
     tttctaatta gtcgcagact tgagtcacct ccagctgacg ctaatatcca aacggtattg       840
     tatcaaagtt ttctaaaaca accctcttat cataaacaaa accaaattct tttgtttcta       900
     ttttatttaa gagttcctta gttttagtat ctctggtaat tcgattatac tgcctttctt       960
     ttctaaaata ttatttatac tattggaatc gatctttttg gatgtctcat agtttaacgt      1020
     aaatcctttt attttacaaa caactttatc cgtattagtc ttataacaat aactttttgg      1080
     acctgttgat aaccagtcaa caatccacac atccttacct aattcatcgg tccactctcc      1140
     caataaacaa ccggttttga tagtattttt accatcgtca atatatacaa cgctatcagt      1200
     atcataatat acaaccgcct ctcccctctc agtaagtctt cgccttcggc tctgggcagg      1260
     cttcgccagt ctttcttgta gaataaatgg cacttgtcgt tcatagaaaa caattatttc      1320
     cgaaacaata tgggtttggt cttaaatatc atagagatat tagaggtgga aatatttttc      1380
     aatctataaa aaaatgctat acctgcaata ggctttttat atcgtaatat attaaaacct      1440
     ttttggaaaa ataataaaga ggatatcatt caaggtgtga cttcagggat taaaaatata      1500
     gcgtctacat acgtaaaatc gccgccgttt tctacttata aagaagaaat tataaatcca      1560
     attctaaaca aaatgaaaga aaaatcgatg aatgaacatt tacgaggcga cggattgaaa      1620
     aaggctaaga caggcagggc gaatcgatta actaaaaaat caaaggagat tattaaaaat      1680
     ctgctgaatg cttaagtttc ttaaaagact tcgcctttcg cctgcggagc cgtagtccct      1740
     ttcagggacg ctctggggct gatttcatca gacttctttt tatttaaata aatggaaagc      1800
     gatgtggaca atttatggcg tattgatgaa atgcctgtga ccgatgaatc aacaaaaagt      1860
     tatacttaca atgaaataag agaaagtaat atcaatatga aagaacttga acagtatacg      1920
     ctcgaaacta atataagtgg atggaaacat ttatcaggtg cttatatttt tgtcaaatct      1980
     aaaattaaaa acaatccaaa taattatgca actatatcaa ataatgggat aaatgatttt      2040
     gactatgtga gactattcta tgaagaggta ttgatagaag aaacaaatta tgtgggcgtt      2100
     gctacgttaa tttcaaatct gattgaattt tctggagatg tttctgatac ttcagcatca      2160
     caattgtgtt ggtatccaga cacagcagat tcagcagata cgtctcaata caaatatgag      2220
     gcgcaagata aatcggtaaa atttaaagat ttaaatgttg atataaaaac tattatttca      2280
     aaaatcacaa ataattctgc attcaacaaa ggatatttag agagatggtt gttaacaaaa      2340
     gatgaaaaaa ctattacaaa atttattcct ttatctaaaa tttaccggtt tgtacgagac      2400
     tgtaacaaag ttttgaatgg aaaaattcgc attgaattac gtaaaaatag ggtgaaaatt      2460
     gataagactc ttgaaaaaaa tcgatacatc cgatttggtg atatctcccg aattagcaat      2520
     ccggaaacga ccagcataat gttggagttg gaatgtggtg aaacggtgaa actaatattt      2580
     ggagccgcac aggcgaaaga agatttttat gaagcaatta ctgtcattag gtaaaatcct      2640
     tatcaacagt tactaatttt tacaagtggc tataaagaaa aatatacata aactttgtat      2700
     gtaaatgaat ttatgaaatt ttttatgtat aattttttat ctgcgtactt gttttttttc      2760
     agctccgatt ctggaaattc tgagtaataa taaatttatt ttgttactta cttgatataa      2820
     taaattaatg tgtaaattat aatatatttt tttggcctcc tgtactgtaa aacgtgaatg      2880
     acagttgccc atttataaaa ggtaacttga cctttaaaca cgatgctgta aactggtagc      2940
     aaacaattag gtaaagtaat cacaaaacac tggacgatta gacatgttta agatacaaac      3000
     cgtgcttacc ataattaagt tcgtataacg aaatacttgt tacctataat tatttaattc      3060
     aatcgaccat ggtgtatatt taattagtga aaatataaat ccccccggaa cagcgccacc      3120
     tatacatacg tttgggaacc acaaatgtca ttgattcaac caaaccaatt cgaaatttta      3180
     cacaagttta tcattcggcg tattattaaa atatttggat aaaatgtctg taacatggta      3240
     tgtgagcctt gctaggatat taccgcattc gagtgtaaat agctatttta atactgtcac      3300
     gtagtgactg ggggtttgct cagaggtagg gcgtcttaat aaaaataccg agaggtctaa      3360
     tcaacaagtt tacttacaga ctagttaaca agtaaaaata aatgtcaata cagcatgcct      3420
     acctttttgg ggctaggtct ttcaggacga agtcccagct cttggcggcc cacacgcgaa      3480
     tccccgataa ttaatattag tttaatagcg agccagcaaa gtgctgactc gtcttaacag      3540
     cgacacacat tttcgtaaca atacactgtt gaaaaccaaa tttgtttgga tatatacagg      3600
     tgtcccaaaa ttcgcggaac agctgagtgg taggttaata actgatgccc tgaagtgggc      3660
     caatagaaaa atagggcaaa atctttgaaa aatgttaatt ttaaaatata cctttaaaaa      3720
     tgggggtgtt ttcacgattt ttttttgctt ttctgcttac ccttgaaaat cgggatatta      3780
     taacgatttt ctttgctttt ctgttcaccc gtgaaaatcg gggtgttttt atgattattt      3840
     gatgtttttt taactacctg gaaaatcggt ggtgttttaa cgtttttttt tttgcttttt      3900
     tgtttaccct tgaaaagcag ggtgttttgc ttgaaattat tgagtgttct gaaagggctg      3960
     tcttcgtacc ttcaaatttt agactttttg atctaccttt tagaattttg atctaccttg      4020
     aaaatcgagg tgttttacct taaaaagtgc tgtgtcctca aggggctcac ttagtagt        4078
//
ID   PONY_AA     repbase;    DNA;    INV; 511 BP.
XX
AC   .
XX
DT   29-OCT-2001 (Rel. 6.09, Created)
DT   29-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon PONY - a consensus.
XX
KW   DNA transposon; Transposable Element; PONY_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Tu Z.;
RT   "Molecular and evolutionary analysis of two divergent subfamilies
RT   of a novel miniature inverted repeat transposable element in the
RT   yellow fever mosquito, Aedes aegypti.";
RL   Mol. Biol. Evol 17(9), 1313-1325 (2000).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 511 BP; 170 A; 96 C; 92 G; 150 T; 3 other;
     taccgttttg attcatatta cggacactta aggcctcagt gaagtataac ccagcataga        60
     gcatacaaaa taaatcattc tgtatgattc cttagcgcta tcgagcgtcg gaaaccctta       120
     actttcgaat ggtgggtgaa gaatacgctt ccgcaacttg aataatttta aataaatcaa       180
     aatgtgtggc cttttcatga ttcttattcc ggacgcttcc tcacttttgc ctcatattcc       240
     ggacactttg attcaaattc cggacagctc atgaaaatca ttaatagaac agtcaaatca       300
     ttaattgaaa tcgttaaacc actaaagaga cgtctaargy agttgggcat tataaatttt       360
     canagatatt tatggaaaat gcttattaaa acgagcctcg aaagtgagaa cttttgaacg       420
     gcaaaaattg aaacatttcg tgtgaaatgt ttcccataca aagtagagtg tccggaatat       480
     gaagctgtcc gtaatctgag ccaaaacggt a                                      511
//
ID   Proto2-1_BM repbase;    DNA;    INV; 1110 BP.
XX
AC   .
XX
DT   29-APR-2010 (Rel. 15.07, Created)
DT   29-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1110
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1048-1048 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..1006
FT                 /product="Proto2-1_BM_1p"
FT                 /translation="GTYATPVYACFLDLSKAFDLVSYDLLWKKLENIKLPT
FT                 EINNILKFWYGNQINNVRWAGALSLPYRLECGVRQGGLSSPTLFNLYMNEL
FT                 IGELSRTRIGCFIDGVCVNNISYADDMVLLSASICGLRQLVSLCEGYAKSH
FT                 GLVYNCKKSEIMVFETRGGTHDKIPPVVLNGTPLTRVYKFKYLGHVLTPDL
FT                 KDDEDIERERRALSVRANMIARRFARCSLKVKVTLFRAYCTNFYTCSLWAG
FT                 YTQRSYNALRVQYNNAFRVLVVLPRFCSASGMFADAHIDCFYATMRKRCAS
FT                 LVNRVRASSNSILSMIASRLDCIYMGRCGAISHGMLPQ"
XX
SQ   Sequence 1110 BP; 292 A; 221 C; 282 G; 315 T; 0 other;
     gtgtcatgtt ctatgaggca cgtacgcgac acctgtttat gcctgctttc ttgatctgtc        60
     caaggcgttt gatttggttt cctatgacct cttgtggaaa aagttggaaa atattaaact       120
     acccacggaa ataaataaca ttctaaagtt ttggtatggg aaccagatca acaatgtgcg       180
     atgggctggg gctttgtctc ttccgtatag gttggagtgc ggggtgagac aaggcgggtt       240
     gagctcgcct acgctcttca acctgtatat gaacgagctg atcggcgagc tcagtaggac       300
     caggattggt tgtttcatag acggggtgtg cgtaaacaac atcagctacg cagacgatat       360
     ggtgctgctg agcgcgtcta tctgtggcct aaggcaactt gtttctttgt gtgagggata       420
     cgccaaatca cacggtttgg tgtacaactg taaaaagtcg gagatcatgg tctttgagac       480
     caggggtggg acgcatgata aaatacctcc cgtagtactc aacggaacgc cattgacaag       540
     agtttataaa tttaaatatc tcggccatgt gttgacccct gatctcaaag atgatgaaga       600
     tattgaacga gagcggagag cgttgtcggt tagagcaaac atgatagctc gcaggtttgc       660
     acggtgttca cttaaagtca aggtcaccct ctttagggcc tactgtacta acttttacac       720
     gtgcagcttg tgggctggat atactcaaag atcgtacaac gctctccgtg ttcaatacaa       780
     taacgcgttt agggtgctgg tggtgctgcc ccgcttttgt agcgcatcag ggatgtttgc       840
     agacgcgcac atagattgtt tttacgctac catgcgtaag aggtgtgcat ctctggtaaa       900
     cagagtgagg gccagctcca acagtatcct gagcatgatc gcaagcaggc tggactgtat       960
     atacatgggt cgctgtggtg ccatctccca tgggatgtta ccacagtaat tcattgtgat      1020
     gtaaatataa ctactaacat aggtctaagt cttattaaca atttatatga gtcatggata      1080
     cttgaaataa aaacattatt attattatta                                       1110
//
ID   Proto2-1_Hmel repbase;    DNA;    INV; 2147 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a Proto2 element from Heliconius melpomene.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2147
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-2147
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2054
FT                 /product="Proto2-1_Hmel_1p"
FT                 /translation="LLNKIKWGYRNEEQIDCYFNICNDQLKHVILPSECEN
FT                 CFEKFCHNXSHRXIIDKLYDTLISILSXAATVSYDIKGDNSSARSPDRLRG
FT                 WNIHVNNAHREARSKFLTWVWYGKPNSGTLYNDMVKSRKIFKSRLKWCQNH
FT                 QEQIKMDALASHHSKGDFGKFWKFTNKLSSRPGLPAVIDGVGEPQIIANLF
FT                 KNQFTVQSSQKLSVRVPDAEINLKDINTSVNTKMVTKIIQSMTRGKSPGHD
FT                 SLSIEHLLHAGPRLAELIALLFNLCIVHSYLPPNLMRTVVVPIVKNKTGDS
FT                 ASSSNYRPISLATIIAKILDSVLSAQLDCYLHIHELQFGFRPQLSTESAIL
FT                 SLKHAVRYYSDRNTPVYACFCDLSKAFDLVIYNILWGKLQQVGMPTELILL
FT                 FKYWYNNQLNFVKWANEYSDPYRLECGVRQGGLSSPKLFNLYINALIEGLS
FT                 GMNVGCHIGGVSFNNISYADDMVLLAPSVSAIRKMLAFCESYAEVHGLVYN
FT                 SKKSEYLVFKSGNKVPENVPSIKLNGKNLARVHQFKYLGHIVTEDLRDDLD
FT                 IERERRALSIRANMLARRFARCSTAVKITLFKAYCTSFYTSSLWVNYTQRS
FT                 YSALRVQYNNAFRALLGLPRYCSASSMFAHAGVDSFPAILRKKASSLLRRV
FT                 RGSRNSVLXAIADSGDCPLIRHMCDITMSLLVIKY"
XX
SQ   Sequence 2147 BP; 622 A; 388 C; 484 G; 643 T; 10 other;
     tgttacttaa taaaattaag tggggatata gaaacgaaga gcaaattgat tgttatttta        60
     atatttgtaa cgatcagtta aaacatgtta ttctcccaag tgagtgtgaa aactgttttg       120
     aaaagttttg tcataatmaa agtcatagat stattattga taaattgtat gacactttga       180
     tatcwatatt gtctaawgca gctacagtat cttatgacat taagggtgat aactcgagtg       240
     ctcgttctcc agacaggctg agaggctgga atatacatgt aaataatgcg catmgggaag       300
     ccaggtctaa gtttctcacg tgggtttggt atggcaagcc caatagtggt actctgtaca       360
     atgatatggt aaagagtcgt aaaatcttta aaagtagact gaaatggtgc caaaatcatc       420
     aagaacaaat aaagatggat gcgcttgcct ctcatcacag taagggtgat tttggtaaat       480
     tctggaaatt cactaataaa ttaagttcta gacctgggtt gccggcggtc atagacggcg       540
     taggtgagcc ccaaattata gcgaaccttt ttaagaatca gtttactgta cagtcttcac       600
     agaaattgtc agttagggtg cctgatgctg agattaattt aaaagacatt aacacttctg       660
     taaatactaa aatggttact aaaattatac agtcaatgac tagaggcaaa tcacctggcc       720
     acgatagtct cagcatcgag cacctcctgc atgcggggcc tcgccttgca gagttgatag       780
     cgcttctttt taacttgtgt atagtacatt catacttacc tccgaatttg atgagaacgg       840
     ttgtggtacc gatagtcaaa aataaaacag gagattcggc tagcagttcg aattataggc       900
     ctatttcttt agcaacaata atagctaaga tactcgacag tgtgcttagc gctcagttag       960
     actgttatct tcatattcac gaattgcaat ttggatttag acctcagtta tccacggaaa      1020
     gtgcaattct gagtctgaag catgctgtca ggtattactc agatagaaac acacctgtat      1080
     atgcctgttt ctgtgacctg tcgaaagctt tcgacctagt catatataat atcttgtggg      1140
     gaaagttaca gcaggtggga atgcctactg aactaatttt attgtttaaa tattggtata      1200
     ataatcaact aaattttgtt aaatgggcaa acgagtactc ggatccgtat aggttagaat      1260
     gtggrgtgag acagggaggg ttgagctccc ctaagctttt taacctctat atcaatgcgc      1320
     tgatagaggg actcagcggc atgaatgtcg gatgtcatat cggtggtgtt tcttttaata      1380
     atattagtta cgcggatgac atggtgctgc tggctccctc tgtcagtgct attaggaaga      1440
     tgctggcttt ctgtgagtca tatgctgaag tgcatggatt ggtgtacaat agtaagaaga      1500
     gtgaatatct agtctttaag tctggaaaca aagtaccgga aaatgtgcct tcaattaagc      1560
     tcaatgggaa aaatcttgct agagtacacc aattcaagta tctaggccac attgtcacag      1620
     aggacctaag agatgaccta gatattgagc gagagcgcag ggcgttgtcg atcagggcga      1680
     acatgttggc tcgcagattt gctcgttgct caactgcagt gaagatcacg ctttttaaag      1740
     cctactgcac ttccttttat acgagcagtc tgtgggtcaa ctatactcag aggtcgtaca      1800
     gcgcgttgcg tgttcaatac aataacgcct tcagggcatt gctggggctg ccgcggtact      1860
     gtagcgcctc gagtatgttc gcgcacgcag gggtcgacag tttcccggcc attctccgha      1920
     agaaagcaag ctctctttta aggcgagtgc gcggcagccg caacagtgtc ytgarsgcta      1980
     tcgccgacag cggggactgt ccgctgatcc ggcacatgtg tgacattaca atgtcactat      2040
     tagttattaa gtactaacac tatatattaa gttttattgt attattacta acatatatgg      2100
     atcatgtgtt gtccgaacaa taaacatttt tatttttatt tttttat                    2147
//
ID   Proto2-1_PPo repbase;    DNA;    INV; 2840 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2840
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3124-3124 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..791,707..2683)
FT                 /product="Proto2-1_PPo_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="HEIQELGNISRSFRYAGKSAVDTSAGLLRGRPYGGVA
FT                 LLWNSXSFXSVSVXSCVSDRXVAIKVNVTGRSFLVFSVYMPTDSSXNFLEY
FT                 VECLSEIVXLVENNNTESVFVLGDFNAHPGEXFCNELINFCNDQKRECIDF
FT                 XXLGLSSNTYTFVSDINGSQRWLDHCLVTEAASGSVTQVRVLYDVYWSDHY
FT                 PLQIQCNIETLQETAEPPRTPTNRVLWGVRDRGQTXMYTKXCNDKLKTIDF
FT                 LASFINAVTQSAQITMRIMLKLTKNNXFPSELHQCCDSICSNNNANHVKIM
FT                 NDLYLKIISSLQEAAVISSQSTKKARVRPIAGWNQYVRDAHRDARQKFLTW
FT                 VAHGRPKKGLLYDEMCSSRVVFKKKIKFCQKNQEXIKINNLVTCHKNKDFR
FT                 GFWNRTKKMSPKPCVPASIEGTQDPRXIAELFSSHFQVRSPLRNXXRXVEV
FT                 VVSGVPKRITAKXVELXIKGMTRGKSPGHDGLSIEHFSYAGPHLPRLLGLL
FT                 FTLCIRHSYLPPDLMRSLVIPIVKNKTGDXGXKNNYRPITLATTAAKILDG
FT                 LIEXQLNRHLXLHDAQFGFRPRLSTECAILSLKHTVKYYTDRRTAVYAAFL
FT                 DLTKAFDLVKYXVLWSKLVEAGVPGEYINVLKYWYDHQTNQVKWLDQLSRA
FT                 YRLECGVRQGGLSSPSLFNLYINQLIVELSSAGVGCSIDGCTVNSISYADD
FT                 MVLLSPSVAALRRLIVICEEYANTHGLVYNVXKSELILFRARGRKREHIPP
FT                 IKLNGVDLRRVSSFKYLGHVVTEDLKDDKDIERERRAMAVRANMLARRFAR
FT                 CSTEVKITLFKAYCQTFYTCNLWVSYTQRAVSALRVQYNNSLRMLLGLPRH
FT                 CSASEMFAQTRIDGFNAILRKRTASLLRRVRESTNSILRGLSEKPDCPIMG
FT                 HWRRVHMRVAGIGSPRSF"
XX
SQ   Sequence 2840 BP; 747 A; 599 C; 689 G; 758 T; 47 other;
     cacacgaaat ccaagagctt ggtaatataa gcagatcgtt tcgatacgca ggcaagtccg        60
     cggtcgatac mtcmgctgga cttctacgag gtaggcccta tggtggtgtg gctcttttat       120
     ggaacagttm magtttcgas agtgtgtcag ttmtctcctg tgtgagtgat cgcmtcgtcg       180
     ctattaaggt gaatgttacg ggacgttcct tcttggtatt ttcmgtctac atgccaactg       240
     actcgtcgga kaattttcta gagtatgttg aatgtttaag tgagatagtt kcactwgtgg       300
     aaaataataa tactgaatcw gtttttgtat tgggagattt caatgcacac ccaggtgagc       360
     mtttctgtaa tgaactkata aacttttgta atgaccaaaa acgggagtgc attgatttca       420
     mawtgctagg cttaagttcc aacacmtaca cctttgtaag tgacataaat ggtagtcagc       480
     gttggcttga ccactgttta gtcaccgagg ccgcgagtgg ctctgttact caagtacgkg       540
     tcctatacga cgtctactgg tcggatcact atccactaca gatccagtgt aatatagaaa       600
     ccctgcaaga gacagcggag ccaccgcgca cccccactaa cagagtctta tggggagtgc       660
     gagatagggg tcaaactgmt atgtacacca aaakctgtaa tgataaacta aaaacaatwg       720
     atttcctagc gagcttcatc aatgctgtga ctcaatctgc tcaaataaca atgcgaatca       780
     tgttaaaatt atgaatgact tatatctgaa gataatatct tcattgcaag aggcggccgt       840
     gattagctca cagtctacta aaaaagccag ggttcggccc atcgctgggt ggaaccagta       900
     tgttcgcgat gctcaccggg acgccaggca gaagttttta acttgggtag ctcatgggcg       960
     acccaagaag ggacttttat acgatgaaat gtgttcctcg agagtagttt tcaaaaagaa      1020
     aataaagttt tgccaaaaaa atcaggaakt aatwaaaatt aataacttgg taacktgcca      1080
     taaaaataaa gactttcgag gattttggaa tcggacaaaa aagatgagcc ctaagccstg      1140
     cgtcccggcm agcatcgagg gcacacagga tcccagggmg atagcggagc tgttcagttc      1200
     gcattttcag gtgcgatcgc ctttgagaaa tcsgwgtcga gstgttgagg tcgtcgtgtc      1260
     cggtgtgccc aaacgtatca ccgctaaaga wgtcgagctw wcaattaaag gaatgacgcg      1320
     aggmaagtca cccggacatg acggcctmag catcgagcat ttctcktatg ctggcccgca      1380
     cctcccgagg ctkctgggtt tgttatttac actctgtatc aggcattcct acttgccacc      1440
     ggacctaatg aggtctcttg tgattcccat tgttaaaaac aagactggtg acmcaggggw      1500
     taaaaataac tatcggccta tcacgctagc tacwactgca gcaaagatac ttgacggtct      1560
     gattgaggka caactcaacc gtcacttgwc actgcatgac gcacagttcg gcttcaggcc      1620
     gcgtttatca acggagtgtg cmattttgtc cctcaaacat actgtcaagt attacacgga      1680
     taggaggact gctgtctacg cggctttcct ggaccttacs aaagcgtttg acctggttaa      1740
     gtacgasgtt ttatggtcta aattagttga ggccggtgtt ccaggcgaat atattaacgt      1800
     tttaaaatat tggtacgatc atcaaactaa ccaggtcaaa tggctkgatc agttgtctcg      1860
     ggcgtatagg ttggaatgcg gggtgaggca gggtggcctg tcctcgcctt cgctttttaa      1920
     tctgtacata aatcagttga tcgtggagct cagcagcgcc ggcgtcggat gctccatcga      1980
     cgggtgcact gtaaacagta ttagctacgc ggacgacatg gtgctgctga gtccttcggt      2040
     tgccgcttta agacgactga tcgtgatatg tgaggaatat gcgaacactc atggcctcgt      2100
     gtacaatgta mgcaagagcg agttaatact gttcagagct agaggtcgta agagggaaca      2160
     tattcctcct ataaaattaa atggcgtgga cctacgtagg gtctcgtcct tcaagtacct      2220
     cggacatgtg gtcactgagg acttgaagga tgacaaagat attgaaaggg agcgaagggc      2280
     gatggcagtc cgtgccaaca tgctcgcccg cagatttgcg cgatgtagta cggaggtgaa      2340
     aatcacactc tttaaggcgt actgccagac gttctacacg tgcaatctgt gggttagtta      2400
     cacgcaacgg gctgtcagcg ccctccgcgt ccaatataat aatagcctta ggatgctgct      2460
     gggactcccc cgacactgca gtgcgtcaga gatgtttgcg caaacgcgga ttgacggctt      2520
     taacgccata ctgcgcaaac gtacggcctc tcttttacgc agagttcggg agagtaccaa      2580
     cagcatccta agagggctta gtgagaagcc cgactgcccg atcatggggc actggcggcg      2640
     cgtacatatg cgcgtagccg gcatcgggtc ccctagatcg ttttaatttt agtttctcct      2700
     ttttctttat gtgtgtgtgt gtaatgtaat ataatatgta attcttctgt ctatgtaata      2760
     taatatgtag tgttcctgta aatatcatat gtgtaatatt ctgttacatg aattaaataa      2820
     attattatta ttattattat                                                  2840
//
ID   Proto2-1_PXu repbase;    DNA;    INV; 513 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-513
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3079-3079 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..408
FT                 /product="Proto2-1_PXu_1p"
FT                 /translation="DLDXEGERRALSVRANMXARRFAQCTTPVKITLFKAY
FT                 CQSLYTCSLWVKRSQRAYNALRVQYNNGFRALLGLPRFCSASGMFADAGVD
FT                 GFAALIRKRAASLMRRVRDSANSYLQLIVDRVGLDCPVLAMWTRLHVP"
XX
SQ   Sequence 513 BP; 116 A; 101 C; 137 G; 157 T; 2 other;
     gacttagatw tagaaggaga acgcagggca ttgtcagtca gagcgaacat gktggctcgt        60
     aggttcgcac aatgtaccac acccgtgaaa attacacttt ttaaagctta ctgtcagtcc       120
     ctttatacgt gcagcctatg ggtcaagcgt tcgcaaaggg cttacaatgc cttgcgggtt       180
     caatacaaca atgggttcag ggctctgttg gggctgccgc gcttctgcag cgcgtctggg       240
     atgtttgctg atgctggtgt tgacggcttc gccgcattga tcaggaagag agcagcatcc       300
     ctgatgcggc gggtgcggga cagcgccaac agctacctgc aactcattgt tgatagagtg       360
     ggattggact gtccagtgct ggccatgtgg acacgtctac atgtgccctg aagagttttg       420
     tgttttattt ttgtgctaga atttaaattt gtattttttg ttttgtatgg accatgtgtc       480
     tgaattaaag atttattatt attattatta tta                                    513
//
ID   Proto2-2_Hmel repbase;    DNA;    INV; 630 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a Proto2 element from Heliconius melpomene.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-630
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..465
FT                 /product="Proto2-2_Hmel_1p"
FT                 /translation="VNRVTEFKYLGHIVTENLKDDKDMERERRALAVRANM
FT                 LARRFAGCSLPIKIALFKAYCQTFYTSGLWASCTRRAAHILRVQYNNAFRV
FT                 LLKLPYHCSASGMFADAHISDYFAIMRKKVASVIQRVRASANSILKVFADR
FT                 VDGPTIGRFIRLHVQN"
XX
SQ   Sequence 630 BP; 191 A; 98 C; 131 G; 210 T; 0 other;
     gtaaataggg taactgaatt taaatacctg gggcacattg ttacggaaaa cttaaaagac        60
     gataaagaca tggaaagaga acgcagggca ttggctgtaa gggccaatat gctggctcga       120
     aggtttgctg gttgttcatt acctattaaa atagcactat ttaaagctta ctgccaaaca       180
     ttttacacca gcggcctttg ggctagttgt actcgaagag cagcccatat tcttcgagtt       240
     caatataata atgccttcag ggtgctgttg aagctccctt atcactgtag tgcatcaggc       300
     atgtttgcag atgctcacat aagtgattac tttgcgataa tgcgcaaaaa ggtggcatct       360
     gttatacaaa gggtaagggc aagcgccaac agcatcctga aggtatttgc agatagagtg       420
     gatgggccca caatagggag atttattagg ttacatgtgc aaaattagct atgtgtttta       480
     aaagttatta tattattatg tattattata tttatatttg ttatcttttg tattttattt       540
     tactaacata gttcttaagt cattgtacta accagctatg agcccatgta gcttgagaat       600
     aaaagatttt taattttatt tttatttttt                                        630
//
ID   Proto2-2_HMM repbase;    DNA;    INV; 2505 BP.
XX
AC   .
XX
DT   20-FEB-2013 (Rel. 19.10, Created)
DT   20-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-2_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2505
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2815-2815 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2395
FT                 /product="Proto2-2_HMM_1p"
FT                 /note="apurinic-apyrimidinic endonuclease, reverse
FT                 transcriptase."
FT                 /translation="NECSVEXCSVNIVFMLGDFNAHPNELFFNELTHFCKE
FT                 QYWXCVDYXMLSSSNPNTYTYTSDINGSSRWLDHCXVTKFAKNYIKSINIL
FT                 NEVSWSDHYPLEVICSLXIPTLLDKSLQLKAENNKIIWGHRDNDQIKLFTE
FT                 LCNKRLRLIELPEEMRECCDNICNDSNHNIVINKLYRDIISILQEAAIASY
FT                 KTVLNNKKKYVTGWNKHVRPFHVAARQCFQSWVWAGKPTYGMFYEKMHYAR
FT                 KAFKNKLKWCQDKEQQIKMDILATAYKTKNFGKFWRFTNGLNARPSRAVEV
FT                 GGVSGFENIANMFRNEFAIKPNNVLCKSDTKDIVNSDKDLFIFTLNEINKV
FT                 LQGXKRGKSPGHDGLSIEHLRYAGVHLPSVLKLLYNLCCRHRYLPDDMLRT
FT                 VVVPIMKNRTGDAADRANYRPISLATITAKVLDGLLDARLNKALKLHDAQF
FT                 GFRPKLSTESAILCLKQTVQYYTERKTPVFACFLDLSKAFDLVSYEILWXK
FT                 LKSRSSLNSHLIDLFKYWYNNQTNIVKWGNAFSDPYKLKCGVRQGGLTSPR
FT                 LFNLYIDPLIEKLNRAGVGCSVDGISMNNISYADDMVLLSPSVSGLKKLLK
FT                 ICEEWAEVNGLRYNSKKSVFLLFRGNIKNTNYKPNFELNGVPLKQVPEYKY
FT                 LGHIVTERLIDDNDMERERRALSVRGNMLARRFTHCTLQVKLALFRAYCQS
FT                 FYTCSLWSNFTRRSYNALRVQYNNVLRAVLGRPRHCSASTMFAEAGVDDFY
FT                 AIIRKRVASVIGRVTSSTNTLLSTLACKMEGPLWRHWNNIHVNTNKI"
XX
SQ   Sequence 2505 BP; 809 A; 391 C; 554 G; 739 T; 12 other;
     aaatgaatgc agtgttgagk actgtagtgt taatatagtt tttatgttag gtgattttaa        60
     tgcccatccc aacgaattat tttttaacga attaacgcat ttttgtaagg agcagtattg       120
     gsattgtgtg gattatgawa tgttatcaag tagtaacccc aacacttata cctatactag       180
     tgatattaac gggtcatcgc gttggctaga ccactgcstt gtmactaagt ttgctaaaaa       240
     ctatattaaa agtattaata ttttgaacga ggtatcatgg tctgatcatt accctttgga       300
     ggttatttgt agtttaaama taccwacttt gttggataag tctttgcagt taaaggcaga       360
     aaataataaa ataatatggg gtcataggga taacgatcag attaaacttt ttacagaact       420
     atgtaataag agattaaggt taatagaatt accggaagaa atgagggagt gttgtgataa       480
     tatttgtaat gattctaacc ataacatagt gattaataaa ttatatagag atataattag       540
     tatattgcag gaggcagcta tagccagtta caaaacagtt ctaaacaata agaaaaaata       600
     tgttacaggg tggaacaaac atgtaaggcc atttcatgta gcggctcggc aatgctttca       660
     gtcttgggta tgggcgggta agccaaccta tggaatgttt tatgaaaaaa tgcattacgc       720
     gcgtaaggcc tttaaaaata aacttaaatg gtgtcaggat aaagaacagc aaattaaaat       780
     ggatatactg gcaacagcat ataaaactaa gaacttcggt aaattttggc gctttactaa       840
     tggactgaat gcacggccga gtcgggccgt ggaggtgggg ggagttagcg gctttgaaaa       900
     tatagcgaat atgtttagga atgaatttgc aataaaacca aataatgtct tatgtaagag       960
     tgacactaaa gacatcgtga acagtgataa agacttgttt atttttactc ttaatgagat      1020
     taataaagta ttgcagggtw ctaaaagggg aaaatcacca ggtcacgatg gcttgagtat      1080
     tgagcatttg aggtacgctg gtgtacatct ccccagtgtc ctcaagttat tgtataatct      1140
     ctgttgtaga catagatatc tcccagatga tatgttacga acagttgtag tacctattat      1200
     gaaaaataga acaggtgacg cggcagatag ggcgaattac aggccgatat ctttggccac      1260
     aatcactgct aaggtgctgg acggtctgct tgatgctcgt ttaaataaag cacttaaatt      1320
     acacgatgca caatttggtt ttaggcctaa actttcaact gaaagtgcga tattgtgcct      1380
     caagcagaca gttcagtact atactgagcg gaaaacgcca gtatttgcct gttttttgga      1440
     cctgtctaaa gctttcgatc tcgtgtcata tgagatactg tggaakaagt tgaaatcacg      1500
     ctctagtcta aattctcact taattgacct atttaaatat tggtataata atcagacaaa      1560
     tatagttaag tggggtaatg cgtttagtga cccgtacaaa ttgaagtgtg gggtaagaca      1620
     ggggggcctt acatcaccta ggctatttaa tttgtacata gacccactaa ttgagaaact      1680
     gaacagagct ggagtagggt gttcagtcga tggcatttcc atgaacaata taagttatgc      1740
     agatgatatg gttttattga gtccgtcagt cagtgggctt aaaaaattac tgaaaatttg      1800
     tgaagaatgg gcggaggtga atgggctcag gtacaatagt aaaaagagcg tctttctttt      1860
     gtttagagga aatatcaaaa atactaatta taagccaaat ttcgaattaa atggtgttcc      1920
     gcttaagcaa gtacctgagt acaaatacct cggccacatt gtaaccgaac gtctgattga      1980
     cgataatgat atggagcggg agcgcagggc gttgtcagtt agaggaaaca tgttagcgcg      2040
     tagattcaca cattgtacat tacaagtaaa gttagcccta tttcgagcct actgccaatc      2100
     tttttacact tgcagcctgt ggtctaactt tactcggcga agctacaacg ccttgcgtgt      2160
     ccagtacaac aatgtgctga gggcggtgct agggaggcct cgtcattgca gtgcgtcaac      2220
     gatgtttgcg gaggcaggag ttgatgattt ttacgcaatc attcggaagc gggtcgcttc      2280
     tgtaataggt agagtcacga gcagcactaa caccctcctc agcacattgg catgtaaaat      2340
     ggaaggccca ctatggaggc actggaataa tatccatgtt aatacaaaca aaatatagat      2400
     aataaattat atcaattact aacgtaggtt aagcaawtgt ttactaacaa aattwtwtat      2460
     ggactggatg tccgaaataa agatttatta ttattattat tatta                      2505
//
ID   Proto2-2_PPo repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-127
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3125-3125 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 127 BP; 47 A; 11 C; 10 G; 59 T; 0 other;
     taataatgta actagtaatt attttaaatt gtttcttaat tttttactaa cactagtcag        60
     taagattttt tactaacaaa atatgagatc ttctctgaaa taaagtttat tattattatt       120
     attatta                                                                 127
//
ID   Proto2-3B_PPo repbase;    DNA;    INV; 130 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-3_PPo; Proto2-3B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-130
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3126-3126 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated. ~82% identical to
CC   Proto2-3_PPo.
XX
SQ   Sequence 130 BP; 45 A; 19 C; 15 G; 51 T; 0 other;
     accttaaagc tgtctaaagt tgcactctgt tcactaatat atattctgtt ttgtcactaa        60
     cataatttaa gaaacttact aacaatttta tgagctgatt gtacgcttga aataaaagtt       120
     attattatta                                                              130
//
ID   Proto2-3_Hmel repbase;    DNA;    INV; 1824 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a Proto2 element from Heliconius melpomene.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1824
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-1824
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1512
FT                 /product="Proto2-3_Hmel_1p"
FT                 /translation="FIYDKXHESRKLFKSKLKYCQNNEKQIKLDIIAQNYA
FT                 NKDFXKFWNNTNKLNPKSSLPVSVDGKFNPTDIANAFRKHFKVVSPLLPQS
FT                 QVFDAGCRDGDFTVGFSECEVASVIKEMVRGKSPGHDDLSVEHLKYAGLHL
FT                 PRVLTMFFNLCMSHCYLPDKLMYTLVVPVVKNRTGDASDLSNYRPISLATI
FT                 IAKVLDGLLDRRLADSIKLHDLQFGFKPGLSTESAIFCLKQTVQYYTARKT
FT                 PVYACFLDLSKAFDLVSYNLLWNKLQCETGLPLDVISIFKYWYDNQRNCVK
FT                 WAGKQSNDYSLECGVRQGGLSSPMLFNFYVNKLIEGLSSTYIGCHVGGTCI
FT                 NNISYADDMVLLSPSIGALNKLLHMCEEYAVAHGLRYNASKSEFMVFQAKD
FT                 LRSQRTVTSVDLGGTQLKRVDRFKYLGHWVTETLSDTVDIERERRALSVRC
FT                 NMLIHRFARCSQQVKLTLFKAYCQTFYTCSLCGHTAHYAFNIIMLSGCCSI
FT                 CRAFVARR"
XX
SQ   Sequence 1824 BP; 490 A; 344 C; 443 G; 545 T; 2 other;
     ttcatttacg ataaaawgca cgagtcgaga aaattattta aaagtaaatt aaaatattgt        60
     caaaataatg aaaaacaaat aaaattggat attattgccc aaaattatgc taataaagat       120
     tttawtaaat tttggaataa cactaataaa ctgaatccaa aatcgagcct tcccgtgagt       180
     gtagatggta aatttaatcc gactgacata gcgaatgctt tccgtaaaca ctttaaagta       240
     gtgtctcctc tccttccgca gtcgcaggtg ttcgatgctg gatgtcgtga cggggacttc       300
     actgtagggt tttcggagtg tgaggttgcc tcagttatta aagaaatggt taggggtaag       360
     tcccccgggc acgacgatct cagtgtcgag catctgaagt acgcaggatt gcacttgccg       420
     cgagttctta caatgttctt taacttatgt atgagtcatt gttatttacc ggataagtta       480
     atgtacactc ttgttgtacc tgttgtaaag aatagaacgg gggatgcctc cgacttgtcc       540
     aattatagac ctatatcctt ggctacgatt atagctaagg tgctggacgg tttgcttgac       600
     agaagattgg ccgacagtat caaactccat gacttacagt ttggttttaa gcctggtctg       660
     tctacagaga gtgccatttt ctgtctcaag cagactgtgc agtactacac agctcgaaaa       720
     actccggtgt atgcttgctt tttggacttg tcgaaggcat tcgatttagt ttcttacaat       780
     ttattgtgga ataagctaca gtgtgaaacc ggtctgcctc tcgatgttat atcaatattt       840
     aaatattggt atgacaacca gaggaattgt gtcaaatggg ctggaaagca gtcgaatgat       900
     tacagtttgg aatgtggagt gaggcagggg ggattgtcct cacccatgct ttttaacttt       960
     tatgttaaca agctgatcga ggggctcagc agcacctaca taggatgtca tgtaggaggg      1020
     acgtgcatca acaacatcag ctatgcagac gatatggtgc tgctgagccc gtcgatcggt      1080
     gctttgaata agttgcttca catgtgtgaa gagtacgcgg tggcccatgg gcttagatat      1140
     aatgcatcta aaagtgagtt catggttttt caggcgaagg acctgaggag tcaacggaca      1200
     gtaactagtg ttgatctagg gggcactcag ttaaaaagag ttgaccgatt taaatatcta      1260
     ggtcactggg tcactgagac tttgtcagac acggtggata tagaaagaga gcgtagggcg      1320
     ctgtctgtcc gctgtaacat gttgattcac agatttgcgc gttgtagcca acaggtcaaa      1380
     ctgacgcttt tcaaagccta ctgtcaaaca ttctacacgt gcagtctgtg cggacatacg      1440
     gcgcactacg cgttcaatat aataatgctt tcaggatgtt gttcgatctg ccgcgctttt      1500
     gtagcgcgtc gttgatgttt gccgagtcgc gtaccgattg tttccccgcg attattagaa      1560
     agcggtgcgc ttcgctgtgg gcgcgagtgc gcggagcatc gaacaccatc ctgagcacgt      1620
     tggctgaccg atgggactcc acattgctta gtcgctgggc taatcttcat gctcctgcta      1680
     ccagctacag tcaatagtgt aggagtctca acggaagcca gtttttgttt gtatatgtgt      1740
     gtgtttgtgt ttgtattaac atagggtaag ttttaattgt tactaacaag tggactaatg      1800
     tcttaaataa ataaatttat tatt                                             1824
//
ID   Proto2-3_PPo repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-168
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3127-3127 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 168 BP; 58 A; 23 C; 32 G; 55 T; 0 other;
     tttatgacat gcgaaaaggg ctccctggtg cgggtgcggc cagccaacat cttggatgaa        60
     gtaatgcttt attagaaaat tttgtagtgt acaacataat taagtcttac taacaaacta       120
     tgagcaaaat gtagcttgaa ataaagttat tattattatt atattata                    168
//
ID   Proto2-4_PPo repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-225
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3128-3128 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 225 BP; 77 A; 34 C; 42 G; 72 T; 0 other;
     gtgcgagcca gcccaacacc attctacata tgattgccag cagactggat tgtagatata        60
     tcaatcactg cataaagctg cacgtggcag gcgataattg tacattttag aataacattt       120
     ggatgtatgt gtgactaaca taggtattaa gttttttctg ttactaacaa actatgagca       180
     aaaaagaagt gtagcttgaa ataaagttta ttattattat tatta                       225
//
ID   Proto2-5_PPo repbase;    DNA;    INV; 203 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   Proto2; Non-LTR Retrotransposon; Transposable Element;
KW   Proto2-5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-203
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3129-3129 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 203 BP; 82 A; 32 C; 35 G; 54 T; 0 other;
     cggcagccgc aacactatcc tggaggtggt ggggagccgc atggacagcc cagtctataa        60
     gcactgggta aatgtccatg tgcactaata taagtatata atctatttta aatgtacaat       120
     actaacttag actaagtcaa attttactaa caaaataatg gatgtatatc tgtaaaatta       180
     taataaataa aaaataaaaa aaa                                               203
//
ID   PROTOP      repbase;    DNA;    INV; 4480 BP.
XX
AC   .
XX
DT   14-JUL-1999 (Rel. 4.06, Created)
DT   29-JAN-2003 (Rel. 8.00, Last updated, Version 2)
XX
DE   Autonomous DNA transposon; a molecular fossil.
XX
KW   P; DNA transposon; Transposable Element; HOPPEL;
KW   P-like DNA transposon; PROTOP; PROTOP.; PROTOP_A; TIR;
KW   insertion element 1360; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-580
RA   Kapitonov V.V. and Jurka J.;
RT   "PROTOP.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
RN   [2]
RP   1-4480
RA   Kapitonov V.V. and Jurka J.;
RT   "PROTOP.";
RL   Direct Submission to Repbase Update (26-DEC-2002).
XX
DR   [2] (Consensus)
XX
CC   The PROTOP consensus sequence encodes PROTOPp, a 855-aa P-like
CC   transposase (positions 1221-3785, just one ORF).
CC   PROTOP has perfect 31 bp-long TIRs and its copies are flanked by
CC   7-bp target site duplications generated upon their integration
CC   in the genome.
CC   Nonautonomous derivates of PROTOP are deposited in Repbase Update
CC   as PROTOP_A and PROTOP_B.
CC   All P-like transposases, including PROTOPp (positions 31-89),
CC   contain a conserved ~60-aa zinc finger motif (smart00692, DM3)
CC   at their N-terminus. The DM3 motif is located downstream of the
CC   previously reported zinc finger motif.
XX
FH   Key           Location/Qualifiers
FT   CDS           1221..3785
FT                 /product="PROTOPp"
FT                 /translation="MAKKKRRYISGNKCSLSHCRKSRRDFPALKLFRFPER
FT                 DPTMLIRWAEKCQFTEDFVASTSSLFLCQDHFSPDDIGVKYLKKGAIPDRN
FT                 LIKYKSCNNADINLNAVGSPPRKRHRSQSPVEVCRQCHKNAKTLKVFQKKY
FT                 FAFKKLSDERQIRIKMLRKENSNLKRKLVRLESKTEKNIYSEIDKINLTGN
FT                 EKILAKMLLKEKKGTNTRWNDCEKLFAQSIYYRSTSTYTFLRDSLKLNFPS
FT                 PSSLQKWNSIKKLQPGDNECLYSALKEAIKEMNASDKECILACDEVAIKKN
FT                 LTYNVSVDIIDGIEHLLDRSNKIGSHICVFVVRGILKKWKFILNYFVAETN
FT                 IKGDCLKSLIYKNIIIAETIGFKVRGVVYDQGGNNRKCTSLLEVTNEKPYF
FT                 TLNNKKYYMFYDIPHLFKSVRNNFLKANFETPDGLVDFDVIREVYELDHGS
FT                 VTRMTKLTRSHVNPTRFELMRVCLATQTLSHTVAAAIKTCNQNKQLHRNSS
FT                 EVAASTAAFVQKVNDYFDCLNSRVLTDKNPMKCALQVNNGVWNKLKEMQEY
FT                 LKSVKYHGNKIYCVDGLIQTTEAIFGLVEDLFKDHTDHFFFLTSRVNQDPL
FT                 ENIFACVRAKGGNCRNPSVNEFNIIIAKLISLHIFKFSQKSNCESDDDVML
FT                 PIEFDSIIYQPFIEKKEIQQQEYSVSFSKIVQDNERYFDQNIDNFLCNDVP
FT                 IELTSSRYFVGYIAKGSSCDKCRSVILKETEHLTAPSELFIHEKNYSIESD
FT                 FGKLKAPSDLFFNICKIHIKAFENIFKNNKKQMCIKKFIVEQCIKCTNESS
FT                 AFSLWFYENNECYAHRTDLLNKLIKVLLFKHCKWTVIADRQKKQAKLSILS
FT                 HK"
XX
SQ   Sequence 4480 BP; 1595 A; 693 C; 760 G; 1432 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     cgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttcgaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactgtatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccttagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca ccatgcgaaa aattcttgtt       300
     ttgcattgcc ttaacgttat tattatttga aaatagatta gaaatagcca aatctatgta       360
     catattatca caaaataaat ttcaaaaatg actttatatt agaatatttg tcattagagt       420
     attcagcttg cggcgtgtga aaaattaata aggcaatgat tgttgagtgc ttgtgtccgc       480
     acttcgtgcc tcaagatatg accaaagcaa agacactaga ataattctag tgtctttgat       540
     atgacttttg caataaacag ttttcatatt tttatttatt ttataaattt ttattttcta       600
     cttcgtatta tttttatgaa atatttattt ctcaatgtaa tgtcttcttt ttgtaaaatt       660
     tatgttttaa attacagtag ttataataat ttatatttta cttcctttaa ttatttagta       720
     tatttattaa gtcatttgac ttaatatgat ttatgtatgt aaatgatcca tttttattat       780
     ttaaaatgca cattagattc agttgttttt cagtttgttt tttttttttg ttatattcca       840
     attcgatatt tttaaaaagc gcgccatttc gggtgggaag aaaagcgcgc caattttttt       900
     gtttttcctt ttaatttctc ttagcccgtt tgcttaaagt tggctatacg cagagctcct       960
     cgattttttg atattttcgc tatataatcg aatttatatt caactaaagt cgttttgttg      1020
     caaaagtaaa gtacggaaat ataagcgcaa atagtaattg cgataaatag tgaatagtga      1080
     atagtgttta cgtattttcg taatttgacg cgctaataca acgtgctgct gcttttcgac      1140
     aaaggtttga gttgaaattt ataaattgta agtgaaaaaa aaaaaacatt ttaatggccc      1200
     atttgaataa ccttatggat atggccaaga aaaaaagaag atacataagt gggaacaagt      1260
     gcagcttatc ccactgtcgg aaatctaggc gcgatttccc cgctcttaaa ttgtttagat      1320
     ttcctgaaag ggatccaaca atgctaataa gatgggcgga aaaatgccaa tttacagaag      1380
     attttgtggc gagcacttca tcactgtttt tatgccaaga tcatttctcc ccagatgata      1440
     ttggggttaa atatttgaag aaaggggcaa ttccagatcg caatcttata aaatataaaa      1500
     gttgcaataa tgccgatatt aatttaaatg ctgtaggatc gcctccacga aaaagacacc      1560
     gctcacagtc ccctgttgaa gtttgtcggc agtgccataa aaacgcgaaa acattaaaag      1620
     tgtttcaaaa aaaatatttc gcttttaaaa aattgtcaga tgagagacaa attagaatta      1680
     aaatgctgag gaaagaaaac tcaaatctaa aaagaaaatt agttaggttg gaatctaaga      1740
     ccgaaaaaaa catatattct gaaatagata aaattaattt aacgggaaat gaaaaaatat      1800
     tggcgaaaat gcttcttaag gaaaaaaagg gcacaaatac aagatggaat gattgcgaaa      1860
     aattgtttgc tcagagcata tattacaggt ccacttcgac atatacgttc ttaagagact      1920
     cgctgaaatt aaattttcca agtccatcat ctttgcaaaa gtggaacagc ataaaaaagt      1980
     tacagccagg agacaacgaa tgtttgtact cagcccttaa agaagctata aaagaaatga      2040
     atgcatctga taaagagtgc atattggctt gtgatgaagt agcaataaaa aaaaacctaa      2100
     cttacaatgt gtcagttgat attatagatg gaatagagca tttacttgat cgctctaata      2160
     aaatcggaag ccatatttgc gtatttgttg ttcggggtat tttaaaaaaa tggaaattta      2220
     tattaaacta tttcgtggcc gaaacgaata taaaaggcga ttgcttaaaa agtcttattt      2280
     ataaaaacat tattattgct gaaacaattg ggttcaaagt aaggggtgtt gtgtacgatc      2340
     aaggaggtaa caatagaaaa tgtacctcac tacttgaagt caccaatgag aaaccttact      2400
     ttaccttaaa taataaaaaa tattatatgt tttatgacat tccgcatctt ttcaagtctg      2460
     taaggaataa ttttctaaaa gctaattttg aaacccctga cggactagtt gactttgatg      2520
     tcattcgaga ggtttacgaa ttagatcatg gatcagtaac gagaatgact aaattaacaa      2580
     ggagtcacgt taatccaact agatttgagc taatgcgcgt atgtttggca actcaaacac      2640
     ttagccacac tgttgcagcg gcaattaaga cttgtaacca aaacaagcaa ttacatcgaa      2700
     atagttccga agttgcagct tctacggctg catttgtcca aaaagttaat gattactttg      2760
     attgcctgaa tagcagagta ttaactgaca aaaaccccat gaaatgcgcg ctccaagtta      2820
     acaatggagt ttggaataaa ctaaaggaaa tgcaggaata cctaaagagc gttaaatatc      2880
     acgggaataa aatatattgt gttgatggct tgatccaaac tactgaagct atatttggac      2940
     tcgtcgaaga tctctttaag gatcacacag accacttttt ctttttaact agtagagtta      3000
     accaggatcc ccttgaaaat atatttgcgt gcgttcgagc aaaaggtggt aactgcagaa      3060
     atccttcagt taacgaattt aatataataa ttgccaagct catatctcta cacattttta      3120
     aattttcaca aaagtcgaat tgcgaatcag atgatgatgt tatgttgcca atagagttcg      3180
     attcgataat atatcagcct ttcattgaaa aaaaagaaat acagcaacaa gaatactctg      3240
     tatcattttc caaaattgtg caagacaatg agaggtactt tgaccaaaat atagataact      3300
     ttttgtgcaa tgatgtaccc attgaattaa cttccagtag atattttgtt ggatatattg      3360
     ctaagggatc cagttgcgat aaatgcagat cggtaatttt aaaagaaacc gagcatttaa      3420
     cagctccatc agagcttttt atacatgaga aaaactactc aatagaatcg gacttcggga      3480
     aattaaaggc accatctgat ttatttttta atatttgcaa aatacacatt aaagctttcg      3540
     aaaatatttt taaaaataat aaaaaacaaa tgtgtataaa aaaatttatt gttgagcaat      3600
     gcattaagtg cacaaatgaa agtagtgcct tctcattatg gttttatgaa aataatgaat      3660
     gttatgcaca tagaacagat cttttaaaca aacttataaa agttttgctt tttaagcatt      3720
     gtaagtggac tgtgatagct gatagacaaa aaaagcaagc taagctcagc attctatctc      3780
     ataaataaaa aaaatgagcg atatttaaat aactgacgac tgaaaaatcg agcaatatat      3840
     aataaaaaac aatagttaga aaaataactt aattggggaa catggaaatg ttttaatgtt      3900
     aaacattaaa atatttcaag tcgactcgaa ggtcatatac gtaaatatag gaccccatta      3960
     caattgtaat ggcctccccg tggtgttccc tgggtaccga ttattacaca tattacacat      4020
     aattaattat caacataaat ataaatatgt aaacggtagc taattcgagc ggcgatttta      4080
     acaaacgaat ttaaaaagct ttaaaattaa aaaattttaa aattaaaatt aaaattttaa      4140
     aattataata atcagggcgc gaatttttaa aaattatttt atttcatcat attgctacga      4200
     aattggcaaa aaactaccct aatatgtaca atgtaaattc atttcttcga tcagaattga      4260
     tttcggcccg aaaatcgtct tctagcacaa cacgcacaca tatacgcgtt ctcgtctctt      4320
     gtttttactc acacaagcaa gcaaattcta tttttagatt tcttacgttc tcagcgtgag      4380
     cgagcggaaa gagagcaatt ttggccgtca ccaaaaaagt ggctgcatag tgccaaacca      4440
     atgtatggcc gttacgcatc ttgttattct agtgtctttg                            4480
//
ID   PROTOP_A    repbase;    DNA;    INV; 1105 BP.
XX
AC   .
XX
DT   02-JUL-1999 (Rel. 4.06, Created)
DT   02-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Nonautonomous form of PROTOP DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; HOPPEL;
KW   P-like DNA transposon; PROTOP; PROTOP_A; TIR;
KW   insertion element 1360; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Kholodilov G.N., Bolshakov N.V., Blinov M.V., Solovyev V.V.
RA   and Zhimulev F.I.;
RT   "Molecular-genetic characterization of a new element in the
RT   Drosophila melanogaster genome with various localizations.";
RL   Dokl. Akad. Nauk. SSSR 295, 984-989 (1987).
XX
RN   [2]
RA   Kurenova V.E., Leibovitch A.B., Bass A.I., Bebikhov V.D.,
RA   Pavlova N.M. and Danilevskaya N.O.;
RT   "Hoppel-the family of Drosophila melanogaster mobile elements
RT   flanked by short inverted repeats and localized preferentially
RT   within the heterochromatic genomic regions.";
RL   Genetica 26, 1701-1712 (1990).
XX
RN   [3]
RP   1-1105
RA   Kapitonov V.V. and Jurka J.;
RT   "PROTOP_A.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   [3] (Consensus)
XX
CC   This mobile element has been reported by [1] as insertional
CC   sequence 1360. It has been reported again in 1990 under
CC   name HOPPEL [2].
CC   Classification of this mobile element as a nonautonomous
CC   DNA transposon derived from autonomous P-like transposon
CC   PROTOP (proto-P) has been made by [3].
CC   PROTOP_A has perfect 30 bp-long TIRs and it generates
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome [3].
CC   The average divergence between PROTOP_A copies and their
CC   consensus sequence is 3%. There are about 100 copies
CC   of PROTOP_A scattered in the D.melanogaster genome.
XX
SQ   Sequence 1105 BP; 370 A; 183 C; 188 G; 364 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     ggccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcataaag tgatagcaga caactgtatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccttagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca ccatgcgaaa aattcttgtt       300
     ttgcattgcc ttaacgttat tattatttga aaatagatta gaaatagcca aatctatgta       360
     catattatca caaaaataaa tttcaaaaat gactttatat aagaatattt gtcattagag       420
     tattcatctt gcggcgtgtg aaaaattaat aaggcaatga ttgttgagtg cttgtgtccg       480
     cacttcgtgc ctcaagatat gaacaaagca aagacactag aataattcta gtgtctttga       540
     tattactttt gcaataaaca gttatcatat ttaattattt agtatattta ttaaatcatt       600
     tgacttaata tgatgtaaca ttaacattaa aagtgtttca aaaaaaatat ttcgctttta       660
     aaaaattgtc agatgagaga caaattagaa ttaaacataa atataaatgt gtaaacggta       720
     gctaattcga gcggcgattt taacaaacaa atttaaaaag ctttaaaatt ataatagtca       780
     gggcgcgaat ttttaaaaat ttttttattt tatcatattg ctaggaaatt ggcaaaaact       840
     accctaatat gtaccatgta aattcgtttc ttcgatcaga attgatttcg gcccgaaaat       900
     cgtcttctag cacaacacgc acacttatac gcgttctcgt ctcttgtttt tactcacaca       960
     agcaagcaaa ttatattttt agatttctta cgctctcagc gggagtgagc ggaaagagag      1020
     caattttggc cgtcaccaaa aaagtggctg catagtgcca aaccaatgta tggccgttac      1080
     gcatcttgtt attctagtgt ctttg                                            1105
//
ID   PROTOP_B    repbase;    DNA;    INV; 1153 BP.
XX
AC   .
XX
DT   24-JUL-2000 (Rel. 5.06, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   PROTOP_B is a nonautonomous form of PROTOP DNA transposon.
XX
KW   P; DNA transposon; Transposable Element; HOPPEL;
KW   P-like DNA transposon; PROTOP; PROTOP_A; PROTOP_B; PROTOP_B.; TIR;
KW   insertion element 1360.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1153
RA   Kapitonov V.V. and Jurka J.;
RT   "PROTOP_B.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
DR   [1] (Consensus)
XX
CC   PROTOP_B is a consensus sequence of a family of nonautonomous
CC   DNA transposon derived from the autonomous P-like transposon
CC   PROTOP (proto-P). The PROTOP_B consensus sequence is 95%
CC   identical with PROTOP_A. Both elements contain completely
CC   different
CC   central portions. PROTOP_B has an unique 571-706 portion, whereas
CC   PROTOP_A has an unique 620-810 portion.
CC   PROTOP_B has perfect 31 bp-long TIRs and it has generated
CC   7-bp duplications of target sites upon its integration
CC   in the genome.
CC   The average divergence between PROTOP_B copies and their
CC   consensus sequence is 7%. This divergence is an overestimate
CC   of the family age since PROTOP_B consists from several minor
CC   subfamilies. There is 95% identity between consensus sequences
CC   of these subfamilies, and members of the subfamilies have
CC   accumulated ~5% divergence from their consensus sequences.
CC   There are about 50-100 copies of PROTOP_B scattered in the
CC   D.melanogaster genome.
XX
SQ   Sequence 1153 BP; 345 A; 196 C; 183 G; 427 T; 2 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     cgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttcgaga gcgagagagc       120
     ggagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactgtatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgtcccttc accttagaag       240
     ttcttagact ttaaatctat attatttttg atcaattggc accatgcgaa aaattcttgt       300
     tttgcattgc cttaacgtta ttattattta aatatagctt agaaatagta atagccgaat       360
     acataatatc acaaaataaa tttcaaaaat gactttatat tagaatattt gtcattagag       420
     tattcagctt gcgacgtgtg aaaaattaat aaggcaatga ttgttgagtg cttgtgtccg       480
     cacttcgtgc ctcaagatat gaccaaagca aagacactag aataattcta gtgtctttga       540
     tatgactttt gcaataaaca gttttcatat ttttatttat tttataaatt tttattttct       600
     actacgtatt atttttatga aatatttatt tctcaatgta atgtcttctt tttggaaaat       660
     ttatgtttta aattacagta gttataataa tttcctttgt atttgcttta attatttagt       720
     atatttatta agtcatttga cttaatatga tgtatgtaaa tgatccawtt ttattattta       780
     aaatgcacat tagattcagt tgtttttcak tttcagtttt ttttttttat attccaattt       840
     gatattttta aaaagcgcgc aatttcatca tattgctacg aaattggcca aaactcccca       900
     aatatgtaaa ttcgtttctt cgatcagaat tgatttcggc ccgaaaatcg tcttctagca       960
     caacacgcac acatatacgc gttctcgtct cttgttttta ctcacacaag caagcaaatt      1020
     ctatttttag atttcttacg ctctcagcgt aagcgagcgg acagagggca attttggccg      1080
     tcaccaaaaa agtggctgca tagtgccaaa ccaatgtatg gccgttacgc atcttgttat      1140
     tctagtgtct ttg                                                         1153
//
ID   PRSAT1      repbase;    DNA;    INV; 142 BP.
XX
AC   M76467;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   P.ratzeburgii satellite repeat sequence.
XX
KW   SAT; Satellite; Simple Repeat; Constitutive heterochromatin;
KW   PRSAT1; heterochromatin repeat; Satellite repetitive element.
XX
OS   Palorus ratzeburgii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Palorus.
XX
RN   [1]
RP   1-142
RA   Ugarkovic D., Plohl M., Lucijanic-Justic V. and Borstnik B.;
RT   "Detection of satellite DNA in Polorus ratzeburgii: Analysis of
RT   curvature profiles and comparison with Tenebrio molitor satellite
RT   DNA.";
RL   Biochimie 74, 1075-1082 (1993).
XX
DR   GenBank; M76467; Positions       1     142.
XX
SQ   Sequence 142 BP; 53 A; 19 C; 26 G; 44 T; 0 other;
     gaatccgaaa caaaatcgtt ccttaaatac gaaatgcgaa tgatttaaga acgtttgcag        60
     agaaatctgg ctgatacatt cgctaatttt taaaattaag cagtaaaatg taaagtttgc       120
     atggtttcag ctgtatttaa ga                                                142
//
ID   pSOS_SO     repbase;    DNA;    INV; 691 BP.
XX
AC   D38566;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Fern sawfly repetitive DNA sequences.
XX
KW   pSOS family; pSOS_SO.
XX
OS   Strongylogaster osmundae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Tenthredinoidea;
OC   Tenthredinidae; Selandriinae; Strongylogaster.
XX
RN   [1]
RA   Sonoda S.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (20-OCT-1994)Shoji Sonoda, Faculty
RL   of Agriculture, Okayama University, Laboratory of Applied
RL   Entomology; 1-1 Tsushima-naka, Okayama, Okayama 700, Japan
RL   (Tel:0862-51-8324, Fax:0862-54-0714).
XX
DR   Genbank; D38566; Positions       1     691.
XX
SQ   Sequence 691 BP; 247 A; 69 C; 153 G; 222 T; 0 other;
     aattcgaata gaagtgtttt agttgaggga tcgaatacaa gtgtagtagt gattgggtgt        60
     gggggctcta gtagtggtgg tgggggtaag gattcaggga aaagaaaaat cagcaggatg       120
     ttacggaaag tcgtataact aaagattgtg ttcatgagat aggagattga aaggactgat       180
     tgttagagta acggaaacgg tttatgatag tgaggatagg tttgagaaga ttagaaactc       240
     attttcaaaa atatagaaat attaaataaa cttacagttt agagaaaata ttatatctaa       300
     tacagggtta taggtcggta cattacagga tgaatgagag cttacattgc aaattaggaa       360
     aaggatcttt caaatctatc ggaatgatga aactcttgat caacatcgag agataattgt       420
     aatcacaatt gataaattca atgaataaat ttcaatctta cccttcttat taattgtttg       480
     gaaaaatata aaatcgacgt tcattgattg ctgaggaagc atactatctg gatttatcat       540
     aacaattgga tgaaaaacat gtataggtct ccgagaatgc atgtacaaga atgtttgcaa       600
     tttattaaat ctgttaatat caagttttat tcattatgaa attgtttacg tttacaagtt       660
     tgaattattc gtttgtagtg agttagtcga g                                      691
//
ID   PST1        repbase;    DNA;    INV; 168 BP.
XX
AC   X56472;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.scalaris Pst-1 major satellite family unit.
XX
KW   SAT; Satellite; Simple Repeat; PST1; Pst-1 repeat;
KW   Pst-1 satellite family; Repetitive sequence; satellite DNA.
XX
OS   Stauroderus scalaris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Gomphocerinae;
OC   Stauroderus.
XX
RN   [1]
RP   1-168
RA   Rafferty A.J.;
RT   "PST1.";
RL   Direct Submission to Genbank (05-NOV-1990)J.A. Rafferty, PATERSON
RL   INST. FOR CANCER RESEARCH, CHRISTIE HOSPITAL, WILMSLOW RD,
RL   MANCHESTER M20 9BX, UK.
XX
RN   [2]
RP   1-168
RA   Rafferty A.J. and Fletcher L.H.;
RT   "Sequence analysis of a family of highly repeated DNA units in
RT   Stauroderus Scalaris (Orthoptera).";
RL   Unpublished.
XX
DR   GenBank; X56472; Positions       1     168.
XX
SQ   Sequence 168 BP; 51 A; 27 C; 37 G; 53 T; 0 other;
     ctgcaggtgc agtgtgcagc ctggtaaacg taaaataata aattacattg tctaagagga        60
     ctagagccgt ttaattgtgt atatatcgtg ttttgtgcat ttccatggaa acgacttatt       120
     gtcatttcta acttctaaaa gcatggatac tagtgccata caggagag                    168
//
ID   P_DB        repbase;    DNA;    INV; 2935 BP.
XX
AC   X60990;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   D.bifasciata p-transposon.
XX
KW   P; DNA transposon; Transposable Element; P-transposon; P_DB;
KW   Repetitive element.
XX
OS   Drosophila bifasciata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-2935
RA   Hagemann S.;
RT   "P_DB.";
RL   Direct Submission to Genbank (26-JUN-1991)S. Hagemann, Inst fuer
RL   Allgemeine Biologie, Waeringerstrasse 17, 1090 Wien, AUSTRIA.
XX
RN   [2]
RP   1-2935
RA   Hagemann S., Miller J.W. and Pinsker W.;
RT   "Identification of a complete P-element in the genome of
RT   Drosophila bifasciata.";
RL   Nucleic Acids Res 20(3), 409-413 (1992).
XX
RN   [3]
RP   1-2935
RA   Hagemann S., Miller J.W. and Pinsker W.;
RT   "P-related sequences in Drosophila bifasciata: a molecular clue
RT   to the understanding of P-element evolution in the genus
RT   Drosophila.";
RL   J. Mol. Evol 31(6), 478-484 (1990).
XX
DR   GenBank; X60990; Positions       1    2935.
XX
SQ   Sequence 2935 BP; 1003 A; 495 C; 589 G; 848 T; 0 other;
     cataatggaa taacataagg tggtcccgtc gtgaggccga agttttacga agtatccact        60
     tatttcagtg cacgtttgct tgttgaagag aaaggttgtg tgcggacgaa ttttttttga       120
     cattctttaa cccttaagcg tgacacatat taatatgaaa tattgcaaat tttgctgcaa       180
     agttgtgacg gcgggagtga gtcttgttca tgttccgaag tgtagtgtaa aaagaaaatt       240
     gtgggaagaa agcctggggt gcagcctggg tggaaactcg caaatctgtg ccacacactt       300
     taacgattcg cagtggaagt ctacagagaa caaaggccag gcaaataaaa gaaggcgact       360
     taataaagat gccattccaa caaaagaaat agagcctgaa ccagaaaatg taaaagaagg       420
     ctacaccagt tccagtacgc aaacagagta agttaaaata gtaaaagaag catgtgcaat       480
     aatgtaaaca ataatgtaac tgtgtttgta ggtgctgttc attgtccaaa gaaaataaga       540
     gcctgaggca gacaattcga gcgatggagt acgatttaca acgtttacga agtcagcttg       600
     aggagtctcg ccaattagaa gagtctcttg ggaaaatttt tacagagact caaattaaaa       660
     tccttaagaa tggtggaaaa agaagcacat ttacatcaga cgacatatcg gcagctattt       720
     gtctccacac cgctggccct cgagcgtata accatctata caaaaaagga tttccattac       780
     ccagccgtac cacgttgtat agatggttat cagatgtgga gataaagaca ggatgtctgg       840
     atgttgccat agatcttatg gaaaatgatg caatggatga ggccgacaag ctttgcgtag       900
     tggcctttga cgagatgaag gtcgctgcag cctttgagta cgacagctca gcagatgtga       960
     tttacgagcc cagcaactat gtgcaactgg ctattgttcg tggtctcaaa aaatcgtgga      1020
     agcagccaat tttttttgac ttcagcaccc gaatggacgc agataccctg aacaacataa      1080
     taaggaagct acacacaaaa gggtatccag tagtagctat tgtatccgat ttgggttctg      1140
     gaaaccaaag actttggtca gagcttggtg tatcagaatg taagtttgtc acaagcatta      1200
     aaattaaaaa taatctttaa tattttgtaa ttttttttta gcaaaaacct ggtttagcca      1260
     tccaacggac gaacatttga aaattttcgt tttttcggat acaccacatt taattaagtt      1320
     ggtccgaaac cattacgtgg attccggatt aacattaaat ggaaaaaagt tgacgaaaac      1380
     gacagtacaa cagacactta atcattgtac taagtcagat gtctctattc tgtttaaaat      1440
     aagcgagaac catttaaatg ttcgctcgct agataaacaa aaggtaaaat tggcaacgca      1500
     gcttttttcc aacactaccg ccagctccat cagacgctgc tattcgttgg ggtatgatgt      1560
     ggagaatgct tgcgaaacgt cggatttatt taagttgctg aatgattggt tcgacgtgtt      1620
     taattcaaaa ttgtcaacgg caaattgcat ccaatccacg cagccttatg ggaagcaact      1680
     tgaattccaa agagatgttt tggaaaaaat gacaaaaata atgagttccg aaattcttgg      1740
     caaatcccaa aagctgccat ttcaaaaagg gattattgtt aataatgcat ccctggatgg      1800
     attgttctta tatttaaaag ataaatacaa catggagtat ttattaacta gccgtcttaa      1860
     ccaagacata gtggaaaatt tttttggcgc tatgcgatcg aggggtggtc agtttgacca      1920
     tccaactcca ctacagttta agtataggtt aagaaaatat ttaataggta tgtcaaattt      1980
     agaaaaatga attacaaatt aattcatttt attaattaaa ttttttaaat gtttagctat      2040
     atgtttcagc aaagtgtgga tcgagaatgt aggtagttat gtggtgtctt atgtgttttg      2100
     tcttttatat gtttctttta attttattat ttactaataa ttcttatact ttatccagcc      2160
     aagaatacag aattgttgag aaacactgga aatgtggaag aagacaacac tgatagctgg      2220
     cttaatttag actttagctc taaaaattca gaaaattggg aaaataatcc tgaagatgtt      2280
     gagcctgaag atgacgaaca aaccatagca aacaacatac ctgcagacat cgaaatggat      2340
     gagttgacgg aggatgccat agagtatgtc gccggctatg tcattaaaag gctaaggacg      2400
     agtgactgcg tcgaacaatc ttcgacattt acctatgtag atgaggtgtc tcacggcggt      2460
     cttattaaac cgtcggatca atttaaaaat aagctcaaag agctagaaaa aatttttttg      2520
     cattatacaa aagaaaattt taaaataaca aaaaatttaa aagaaaaatt aataatcgca      2580
     gcacaaaatg tagagctgga taagtttgta atttcttttt attttaaaat aagaatatac      2640
     tttagagtta agtacttaaa caaaaaaatt tgtattaaga accaaaagca gcgtttactt      2700
     ggtaactcaa aactattaaa aatgaaactt taaaaaaatt gctcgtctct ttattataaa      2760
     tggcatattc aaagcctacg gacatgctaa gggttaatca acaatcacat tgccgcctca      2820
     ctcacactta ctacgacact cagtttacta tgttcctttc actcgcactt attgcaagca      2880
     tacaataagt ggatgtctgt tgccgacggg accaccttat ggttattcca tcatg           2935
//
ID   P_DG        repbase;    DNA;    INV; 2888 BP.
XX
AC   L32023;
XX
DT   02-JUL-1999 (Rel. 4.06, Created)
DT   02-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   P_DG is a P-like element from Drosophila guanche.
XX
KW   P; DNA transposon; Transposable Element; DROPELB; P element;
KW   P repressor; P_DG.
XX
OS   Drosophila guanche
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-2888
RA   Miller J.W., Paricio N., Hagemann S., Martinez-Sebastian J.M.,
RA   Pinsker W. and de Frutos R.;
RT   "Direct submission.";
RL   Unpublished (1994).
XX
DR   GenBank; L32023; Positions       1    2888.
XX
CC   CDS (transposase)	join (742..1357,1411..2174).
XX
SQ   Sequence 2888 BP; 894 A; 562 C; 635 G; 797 T; 0 other;
     aatggcaaat gtaaaagttg aaaaaaaaaa aaggtacaca tatactaact gagtaccggg        60
     tataaaagtt gtgacgcgta agaagcgtct tacacatccc ctgctcgttt ttaccttcgg       120
     ttctcttgga atcttcatcc ggactgtttt acaaagtaaa caaaacaaaa cagcactcag       180
     ctgtttcaga attatagccg tatggaatac agtttacatg cctggtcaca ctctgtcgcc       240
     agcaaaacaa ttgcacatct acatagattc ggaaaaggtt gaacaaaatt tctatttttt       300
     tcaattgcta accgtatgag cgccaaaata tgaagtggtg tagtatatgc cgcaaggtcg       360
     acaatgatgt gaaagtggtt catgtaccga agtgtttaga gaagagaaaa ttgtgggagc       420
     aaggtctggg ctgcagcctt actattaact cgacaatttg cgattcacat ttcgatgctt       480
     ctcagtggaa gtcggcaaca agtaaagggc aggtatataa aagaaggcga ctgaaagctg       540
     atgctgttcc gcatggcgag cctgaaccaa aatttgttaa attaggcttt gcaaactcga       600
     gtacgcaaac agagtaagct aaacatgctc aaataaatat ttacacaaat gccaatacta       660
     atttgtttgt aatgtaggga caacgtgata aatcatgcaa tacgtgtgga gaacgagagt       720
     ctgaggaaac agaatcgtcg aatgcagaaa gaaatgcatt ctttacgtca gcaacttgag       780
     gactttaagg aattggaaat cagtctaaaa accattttca ccgagaccca aataaatata       840
     ttgaagagtg gaggcaagag agccgtattt aatgcaacag acatgtctgc tgctatttgc       900
     cttcataccg cgggacctcc tgcatacaat catctttata gaaaaggatt tcctttgccg       960
     agtcgagcaa cattatacag atggttggca gatgttaaca tcagtacagg tacccttgat      1020
     gtcgttatag atctcatgga aaatgaggaa atgcccgaag tggataagct atgcgttttg      1080
     tcctttgatg aaatgaaggt tgctgctgca ttcgagcatg acagctcagc ggatgttgat      1140
     tatgagccaa gcacctatgt tcaactggcc atagctcgtg gcttgaataa gtcttgggag      1200
     cagccagtat tcttcgattt cagtactcta atggacgcgg acactctgca ttcaataata      1260
     aacaaactgc acaaaagagg ctatcccgta gtagctattg tctctgattt gggcgctgga      1320
     aatcaaacat tatggacaga gcttggcata tcggagagta agtttcttat acgagttaaa      1380
     atccgaaatt taatttattt tttgttttag caaggaattg gtttacccat ccagcggatg      1440
     aagatttgaa aatattcgtt ttctcggata ccccacatct gataaagttg gtccgtgacc      1500
     agtatgttga ctccggacta atcatcaacg gaaaacgatt gactaaatcg acagtccagc      1560
     agacaattag ccactgtgct aagccagatg tgtcgatgtc attcaatatt accgataatc      1620
     accttaatat tggaccgctc gccaaacaga atatcaaatt ggcaacgcaa ctgttctcca      1680
     atacaaccgg cagcttcata agacgatgca atgcattggg ttataacgta cagaacgcat      1740
     ccgaaaccgc tgatcttttt aaaattatca atgattggtt cgcggtcttc aactcaaagt      1800
     cttcaacatc aaattccatc gaaccgacgc agccttatgg caaacaaatc gaaatccaac      1860
     gaggcatttt ggccaaaatg tctgagatta tgagctcgga gatacttgga gtgggagccc      1920
     acagcctgcc cttccaaaaa ggcattttag tcaacaatgc atcccttgaa ggtttgtatt      1980
     gctatctatc ggaaaagtac gagatgcaat acatttttac aagtcgtctc tcccaagaca      2040
     ttgttgagaa cttttttatc gccatgcggc ctaaaggtga acagtttgag catccgactc      2100
     cacttcaatt taagtttatg ttaagaaaat atatatcagg tatgacaaaa ttaaataaac      2160
     caattgataa ataattgatt tgaacaatac aaattgtgac atagaaataa ttgttttaag      2220
     ttattttata tttatattaa atttgaggga cacgtgttat agaggaatga tatggttgta      2280
     tatctagggt tcctgctcca tgggagctgt attaaagagc gtgtagcatg tgctcaagtc      2340
     taagtttgct aaagtaccgc attgtttttc gactgcagac gctcgcgtat gatccgctgt      2400
     gcgctgaaat ttccttggcc gctgctggca gtacctgtgg gatcaggatg cgcacattgg      2460
     ccgcatggta taagttgtgt aggcaaaaag tgcgcgtaaa gtcctcgaaa tagaactgca      2520
     tttccagagt gatgaacagt cggatgaggt ccagggccag cttggcatcg tgcctggcca      2580
     gctggccgcg tataagctgt tcgtctgtgc ccagagctcc ctcaaagacc tgatagttct      2640
     cgcacttgga gcgaacgagc tgcagcaggt ccagcaggaa cttgggcgct cttcgagcgt      2700
     gttggaaatg tcgtaagaac tcatcatcca agtttagcgg tattttgaga ttaattatac      2760
     ccgttactcg aagagtaaat agggtatatt gtatttgtgg ggaaacaatg taattcacag      2820
     aaggaagcct ttccaagccc aaaaggaata tatatttttg attcagcatg aatagccgag      2880
     tcaatgtg                                                               2888
//
ID   Q           repbase;    DNA;    INV; 4526 BP.
XX
AC   U03849;
XX
DT   03-DEC-2002 (Rel. 7.11, Created)
DT   20-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   Q is a non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; CR1 clade;
KW   ORF1; ORF2; Q; reverse transcriptase.
XX
NM   Q.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4526
RA   Besansky J.N., Bedell A.J. and Mukabayire O.;
RT   "Q: a new retrotransposon from the mosquito Anopheles gambiae.";
RL   Insect Mol. Biol 3(1), 49-56 (1994).
XX
DR   Genbank; U03849; Positions       1    4526.
XX
CC   Q is a CR1-like non-LTR retrotransposon. It encodes a
CC   DNA/RNA-binding
CC   protein (Q-ORF1p) and the reverse transcriptase (Q-ORF2p).
XX
FH   Key           Location/Qualifiers
FT   CDS           1264..4413
FT                 /product="Q-ORF2p"
FT                 /note="reverse transcriptase"
FT                 /translation="MIPWKHPTQHLFLDRPKTTVLHLRTYTSLQSIAFFST
FT                 RRSSAHCTQQTRQASCSDNAAQLTYRLPALSNRHNDNATAEYLSCYYQNVR
FT                 GLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSL
FT                 SGSSSRGGGVLLAVSNAYESIELPSRDRSLEYICVRVACNNAHLYVMVVYI
FT                 PPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPSISWSTADPSS
FT                 SPAYSSITHYEPTARSLANNTFVDGFKFNGLVQLNHINNSHGRMLDLLYAN
FT                 NAAAKLCSPVFPSVVPLVPLDSYHPALDFNIRINSSTRRNSTTRQNSTTTA
FT                 LYRYNFAKADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVC
FT                 VPVQRPKPNPPWADRTLKRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLYC
FT                 SYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSITYKGATSAN
FT                 TNEMCNLFADRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVL
FT                 SALAQLKPSFAPGPDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWR
FT                 KSWMVPIYKKGDRTDAINYRGITSLCAIAKVFELVIYKNLLHACRSYLSPY
FT                 QHGFVPKKSTTTNLVEFVTYCTSQIDAGAQVDAIYTDLKAAFDSLPHAILL
FT                 AKLDKLGIPSPLVQWLKSYLIHRTYIVKIDKHMSKEIVSSSGVPQGSNIGP
FT                 LLFILFINDVTLALPPDSISLFADDAKIFAPINNTGDCTFLQDCIEIFCSW
FT                 CKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNRQNHAKDLGVLLDS
FT                 SLNFKQHIDDVVARGNQLLGVVIRTTNEFRNPMCIKAVYNCIVRSVLEYSC
FT                 VVWSPTTASSIARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEP
FT                 LSVRRRNAQCSFIAGLLNGSIDSSPLLHRVDIYAPSRTLRSRETLRLAQPR
FT                 SSAGRSDPMFRMSAVFNTVSDCFDFDISTQCFKERLRLLPWPQ*"
FT   CDS           210..1376
FT                 /product="Q-ORF1p"
FT                 /note="DNA/RNA-binding protein"
FT                 /translation="QCCAVITRDFAMAAICFSCAEPLEATGCIISCAYCDA
FT                 TFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNMLKNPRCRSVKEIGAQVGF
FT                 QAALNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRR
FT                 RIIEDSASPGVNKIVNSRGNTLCAASSPNAYTNTTIAVQPAPTQPHELVGT
FT                 DPLSSPLQAAPREPFTDRIWIRLSAYQRPSLWNKWSLSVKRRLATDDVIAY
FT                 CLLRRGVSVDSMNWLSFKVRVPAILRDAALTPSTWPVGIGVREFFQSRQHD
FT                 HQTSSPIATRNRFTTRTPATSTEHRYTTRTPTTTHRLAARTSTPPDPETTS
FT                 SQQCHPPVNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN*"
XX
SQ   Sequence 4526 BP; 1117 A; 1250 C; 917 G; 1242 T; 0 other;
     acgtttgacg tttgacgttt aattgttcgg ccgcatttcc gtcgcgctcc gtgatttttc        60
     aataattctc ttgtgttttc tgcgtcgcat cgcattgttg ccttttctac ggactattaa       120
     actgtttaac atcatcgctt cgtcttggcg aattgtttag tcctgcatca caactgtggt       180
     ttcctgctgt tttttcctgc tcggcttagc agtgttgtgc tgtgattacg cgtgatttcg       240
     cgatggcggc tatttgcttc tcgtgtgctg aaccgctaga ggccaccggc tgcatcatca       300
     gttgtgcata ttgtgacgct acgttccacc gcggctgttg caaattgccc cccgagctga       360
     ttgacgcagt attgtccaat gtcgacctgc actggagctg cattggctgc actaacatgc       420
     ttaaaaatcc gcgctgccgt tccgtaaaag aaataggcgc ccaggtcggt ttccaagccg       480
     ccctcaactc agctgtagca gctattggca agctcgttga gcctattgtc gccgaagttc       540
     gcagtggttt taccctcctt caaactgcat ccacgcctca caatcggaac tctgatcctc       600
     gaccagctac tggtagaaag cggaggcgta taatcgagga ttcggcatct cctggtgtaa       660
     acaaaattgt aaacagtcgc ggcaacaccc tttgtgccgc gtcatcgcca aacgcataca       720
     ccaacaccac gattgccgtc cagccggcac ctacacaacc gcatgaactg gtgggaaccg       780
     atccgttatc gtcaccgctt caagctgcac ctcgtgagcc attcacagat aggatctgga       840
     tccgcctatc cgcttatcaa cggccgtcac tgtggaacaa gtggtcgctt tctgtaaagc       900
     gtcgcttagc caccgatgac gttatagcgt attgcctgct gagaagaggg gttagtgtgg       960
     acagcatgaa ttggctttca ttcaaagtga gggtcccggc tatccttcga gatgcggcac      1020
     tcacaccatc cacctggccc gtcggtatcg gtgtacgtga gttttttcaa tcccgtcaac      1080
     acgaccacca aacctcatct cctatagcca cccgaaaccg ctttactaca cgcacaccag      1140
     ctactagtac tgaacaccgc tacaccacac gcacaccaac aacgactcac cgtttagccg      1200
     cacgcacgtc tactccacct gatcctgaaa caacatcatc acaacagtgt caccccccgg      1260
     tgaatgatac cttggaagca cccaactcaa cacttgtttc tggaccgccc caaaaccacc      1320
     gtgcttcatc tccgcaccta caccagtcta caatcgatcg cttttttctc aactagacga      1380
     agttccgctc attgcacgca acaaacacgc caagcctcat gctctgacaa cgcagctcaa      1440
     ttgacttacc gtttacccgc tttatccaac cgccacaatg acaacgctac cgctgagtat      1500
     ttaagctgct attatcaaaa cgttagaggt ttgcgtacta aaacaaaaga atttcactta      1560
     gctgtatcag aggctgactt cgatctcatc gcactcacgg aaacttggct tgttgacaac      1620
     attccatctg ctcttctctt caacaacaac ttctctgttt accgctgtga tcgctctctc      1680
     agcggctcta gctctcgcgg tggtggtgtt ttgctagccg tttctaacgc atacgagtcg      1740
     atagaattac cttcccgtga tcgttctctc gagtatattt gtgtgcgcgt cgcctgtaat      1800
     aacgcacatc tgtacgtcat ggtagtatac attccaccgc agcttagctc cgagatatcg      1860
     actcttcgct ctctacatga ttgtatcagc agcttcactc tcagactgaa gccttcggat      1920
     ctgctgtttg ttattggcga tttcaatcag cctagcataa gctggtccac agctgatcct      1980
     tcgtcctcgc cagcatactc atcaatcacg cactatgaac caactgcgcg ctcactggcc      2040
     aacaacacct ttgtggatgg atttaaattt aacggattag tgcaacttaa tcacatcaat      2100
     aattcacacg gacgcatgct tgacctgctc tacgctaaca atgctgcagc taaattgtgt      2160
     tcgcctgtct ttccaagtgt tgttccgctt gtacctcttg actcctacca tccggcgtta      2220
     gacttcaata tacgtattaa ctcgtcgacc cgacgcaatt cgacgactcg acaaaactcg      2280
     acgacaaccg cattgtatcg ttataacttt gctaaagctg actatgtgaa actgaacgac      2340
     atgatatcaa tgtttaacaa tagctttcat tgttccaatt ttatttcact tgacgaagca      2400
     gtatgttcat tctcgtcctt catgctgcaa gcttttgttg tatgcgtccc agttcagcgt      2460
     cctaaaccta accccccctg ggcggaccgc acactcaaac gactcaaacg tgtaaaaaga      2520
     gctgcttatc gtcactacca aacgcgccgc tgccaaagat ctcgctcgat ctactttgac      2580
     acgcactctt tatactgcag ctataacagg tttcgatatc gcagatattt gagtaaaatt      2640
     caacgtaacc tctgcaggtg gcctgactcg ttttggcgct tctacaacag caaaacaaaa      2700
     tccacgcata caccgaaatc cattacgtac aaaggagcaa caagtgccaa cactaatgaa      2760
     atgtgcaatc tcttcgcgga tcgcttcgca gattgcttct caccggccat gaatgatacc      2820
     gataccattg atgctgctct cgtcaacact ccggctggag caattaacat gagcactcct      2880
     ttcatcgaca gtgagatcgt tttatctgcc ctagcgcaac taaagccttc cttcgctcct      2940
     ggacccgacg gaattccttc taccgtgctg aaacgctgtc aaacgacggt agcacctatc      3000
     cttgcaaaat tgttcaatgc atcgctagcc aatggctact ttcccaaagc gtggaggaaa      3060
     tcttggatgg ttcctattta caaaaagggc gacaggacag atgccatcaa ctaccggggt      3120
     attacatcct tgtgtgccat tgccaaggtg ttcgaactag tgatatacaa aaatctgcta      3180
     catgcatgcc gcagctacct aagtccgtat caacatgggt tcgtgccaaa aaagtcgact      3240
     accacgaacc tggttgaatt tgtaacctat tgcactagtc aaattgatgc cggagctcaa      3300
     gtcgatgcaa tttataccga tctaaaagca gcattcgact ctcttccgca cgcaattctt      3360
     ctcgctaaac tcgataagct aggaattccc agcccgctcg tacagtggct taagtcgtac      3420
     ctaattcatc gcacatacat cgtgaaaatt gataagcaca tgtccaaaga aatagtcagc      3480
     agctcgggtg tgccacaagg aagcaacatt ggcccgcttc tcttcatatt gtttatcaac      3540
     gatgttaccc tcgctttacc tcccgacagt atcagtctgt ttgccgacga cgcaaaaatt      3600
     tttgcgccta ttaacaacac aggtgattgt acattcctgc aagactgcat cgaaattttc      3660
     tgttcgtggt gcaagcgtaa tggactgact atctgcatcg agaaatgcta ctgtgtgtct      3720
     tttagtcgat gcaggagccc agtgactggg acctacttca tggacggcac tgcagttaat      3780
     cgacagaatc atgccaaaga cctgggcgtt ctgcttgact ctagtttgaa ctttaaacag      3840
     catatcgatg acgttgtagc cagaggaaat caattacttg gcgtggttat ccggacaact      3900
     aatgaattcc gcaaccccat gtgcatcaaa gctgtgtaca actgtatcgt tcgttcggtt      3960
     ctggaatatt cgtgcgtagt ctggagccca actaccgctt cttcaattgc tcgaattgag      4020
     gcgattcaac gtaagctcac gagatatgcc ctacgcctac ttccctggca ggatcgcaat      4080
     aatcttcctc cgtatgctgc gcggtgccgt cttctaggcc ttgaacctct ttcggtcaga      4140
     agacgcaatg cacagtgttc tttcatcgct ggattgctaa atggctctat cgactcatcg      4200
     ccattgttgc atcgagtcga catctatgca ccatcccgaa cacttaggtc tagagaaact      4260
     ctacggctcg ctcaaccccg ttccagtgct ggtcggtcag accctatgtt ccgcatgtcg      4320
     gctgtcttca acactgtctc ggattgcttc gacttcgaca tctcaactca gtgcttcaag      4380
     gaacgtctcc ggcttttgcc gtggccgcag tgaattgcga tgcaaatctt gtttttgcta      4440
     tgtatttttt tttttttatt gaactgttac atcttaatta ggccatacgg ccgttgaaga      4500
     ttaataaata ataataataa taataa                                           4526
//
ID   QUASIMODO-u2_I repbase;    DNA;    INV; 4686 BP.
XX
AC   .
XX
DT   07-DEC-2019 (Rel. 24.12, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 1)
XX
DE   QUASIMODO-u2_I is the internal part of a non-autonomous
DE   Gypsy-related retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   internal portion; QUASIMODO-u2_I; QUASIMODO-u2_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4686
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (07-DEC-2019).
XX
DR   [1] (Consensus)
XX
CC   flanking LTRs are 97% identical to each other. In the genome, it
CC   is often
CC   observed embeded in a larger duplication fragment.
XX
SQ   Sequence 4686 BP; 1965 A; 780 C; 679 G; 1262 T; 0 other;
     ttttttttat cataatttct tagagctaaa agattagttc gagattaata aagcgcagct        60
     cgtggcgaac aaactttcgt ttgtgcttca gtttatacaa agcagatccg caaaagaatt       120
     tatgtgacaa aatatttgta aatagttatg taacgatgtt ggatactatt aatacaaatt       180
     aaaaaaaact gcaagtgacc attaaagtgt gacccaccaa aataaataaa agttgtgact       240
     gttaccaggt cagtgttgtg tagcccatct aacattgact ggaccgctac taaggtgtgt       300
     gaattaaaaa aaataataat aaaaccctgg tatctaccga gtgatttaaa gcaaaaatca       360
     acaatagcca aatacatggc acaacccagt gaaaaaatta tgattctatc tgagttacat       420
     ttgaatcagg ctttgggcca gattcgccac atcccaacat ttgacggttc cacaagagaa       480
     ctggcatcat ttgtgagacg tgtggacttc gtgatgtccc tatacacgac aacagactag       540
     aggcaacata gtgtactcta cagtgccatc gagatgcagc tgtcccgaca ctcacaagaa       600
     gtgtcccagc tacaacagtg caacacttgg gctgaactac gttcagtcct cattgatgaa       660
     ttcaaaaccc aaatcctatg cgaagagttg ctaagacgac tttacaacac gtactggagt       720
     ggtagtattc gtaagtttgt agaataacta gaaaataaga tgtttgaaat tttaagtaaa       780
     ttatcactag aaaataatta tacaaataca actctttata ccgccgcaat ggctaatatt       840
     ataaaagatg taatttctaa aagaattcca ggcagaatga atgttcatga ctttagcaag       900
     atacgacatt acaacaacaa cattattaat tgttatacaa ttgtattaaa tacagaaaaa       960
     gctaaagcta aatcaaacag tccatctaca tcacaaagca gtagtaaaaa taatgaacat      1020
     cagaagaata aaagaaataa taatgaccaa ggtataaaac cttattatat tcaaacacag      1080
     ccaaatcaaa attaaaataa ttatgcaagt aataattaaa aaaaagttga aaataaccaa      1140
     gcgacataca gtgagttcaa acaaatttta gaccaaggta gagcgcaaaa cgctctaaaa      1200
     tttcaaaaac ccacatctta ttttacaact aaacagcccc aaaagaaggc agcgtgaaag      1260
     ttccagtggt cagtctaaaa tggacactag tgaaaatttt catcaacttg cctcgggatc      1320
     ggaatcagaa gtagaagtag aagaacctac tcattcatac aaataactat gaacgatatc      1380
     aaactcaaat gtttgattga cacaggttca tcaataaatt tgatgagtaa aaattttttc      1440
     aattgtccga ttaactcaaa agctccatta gatgtacaca caataatcag tcaaattatt      1500
     ttaaaatcaa aaattgcatt aaaacctagt aaacttgtcc gacaaagaaa acatttatat      1560
     ttattatatt gagtaattga caacgaactc aatgaaacaa atgaatttcg acttgatcat      1620
     ctaaacgatg cagagaggaa ggccctcacc agtgtctgaa acgagtttag tgacatacag      1680
     tacaaagaag gtgaaaattt gaccttcaca agtacaacta aacatgtcat aacaactaaa      1740
     cacgaagacc caatctaaga cgtccatatt aatacccaca aagctttgac gaagaagtcg      1800
     aaaaccaaat gaaagacatg atgcaacaag gcatcataag aaaatcgaat tctccgtatt      1860
     gctctcctgt ttgggtagca aacctcgcaa aaggttttca tcaaataaaa atggatgaaa      1920
     actctatagc gaagacagct tttcccacca aaaatggtca ttttgaatat actcgaatgt      1980
     catttggttt aaaaaatgca accgcaactt ttcaacgttg catgaataat ctcttagcag      2040
     atttaatata caaaaacttt ctcgtatata tggatgacat aattgtatat tccacttcat      2100
     tggaagagca cataatgtct ttgcgaaagg tattctcaaa gctcagagaa gcaaatttaa      2160
     aattacagct agacaaatgc gaattcctta aaaaagaaac tgaattctga atcactgaaa      2220
     gtggatttcc ctataccaaa gtccattaag gaaataaaat catttcttgg tctttgcggt      2280
     ttttaccgca aatttattcc aaacttcgct aaaatagcaa aaccaatgtc attacgacta      2340
     aaaaaaggct caataataaa tatcaaagac taagactatt acttagcttt tgaaaaatta      2400
     aaagtgttaa taacgtccga tcccatatta atacacctag attttaaaaa atcaaattaa      2460
     atgaatttaa tatcatatca aatatctcca tggtaaagaa aaccatgtag cagatattct      2520
     atcaagtgta aaaatttaag aaaacttcct agaagaaacc ttcagtaaca tttcgttacc      2580
     aactcaagct actattcaca gtgctcaaga agataaccaa tcttatattt ccttaacgga      2640
     aagaccaatt aatttctaca acaggcagat agaatttata aaagacgata ataataccat      2700
     agaaaccaaa agatactttc ataaaacaaa aattaaaatt cattacatag aaatgacaaa      2760
     tgtccatgcc aaagaattaa ttaaagaatt tttatgtacc aatagaagcg taattttctt      2820
     tcattacgaa atagatttcc ttacatttca aaacgcttac atagaaattg tcagtccgaa      2880
     taacataact aaaattatga aatcaaacat caaattaaaa gatgttgaaa tgtattcaga      2940
     atttaaagaa ataattgtaa aaagccacag agaactttta cacccaggaa tagagaaaca      3000
     aacaaacctt ttcaaagaaa aatattatta cccagactac caaaagttaa tacagaacat      3060
     tattaatgaa tgcgaagtat gcaacatatc aaaaacagaa catagagata ctaaactaaa      3120
     ctatgggtta acaccgaaaa ctcttaatcc cagagaaaaa tatgttatag atttttattt      3180
     aatcaataat aaaacattcc tgttatgcat tgacatttat ttcaaatatg ccgccttgat      3240
     tgaagtcagc agtagagact ggctggaagc aaaaagagct ctccttaaaa ttttaaatga      3300
     aatgggaaaa ccgtccgaaa tcaaggaaga taaagattca gcttttatat gttccgcgtt      3360
     acatttatgg cttaggtccg aaaatgtgaa tataaatatc acaacaagta aaaatggaat      3420
     ttctgacatt gaaagattcc ataaaacagt caatgaaaag ttaagaatca ttaatagtga      3480
     gtccgaccca gaaaataaga taacacaatt tgaaactatt ctctatgtat ataaccacaa      3540
     aactaaacac aatacaactg gtagaatacc cgctgatatt ttcatttatg caggaatacc      3600
     tgcatatgac acccaaaagg agaaacaatc gaaaatagat cagttgaata gagatagaca      3660
     tagctatgaa gtaaatacca gatataaaca agcaccattg gtaaaaacaa ctaacccatt      3720
     taggaaaaca ggacacatgg aacaaataga tgtgaaacat tacgaagaaa caaatagaga      3780
     tggaaaagtt gaacattata aatctaaatt taaaaaaaaa aacaaaagaa aattaataac      3840
     agtaaataca attccagctc aactcctgaa aatcaagtgg ggtccgatat aatatgtttc      3900
     gtccgtaccg tccgtggtca aagcctagag gtgaacccaa tacaagctaa aaatgaatat      3960
     cttatattta aaacaggatc aattaatata cctataaatt aatgatgaat atcactattt      4020
     ttccgtaaac ttaacaaaaa ccgaccaaac ttttgcaaat ttaattaacc aagccgaaga      4080
     atatggtact atagcccaaa tccaatattt acctgaaaaa attagacaga ataagaataa      4140
     taaaacgcaa taaacgtggt ttaattaata ttataggtac cgcatataaa tacctttttt      4200
     ggcactttag atcaaaatga caaagaagaa ttagaacaaa aaataagcga tctttctcaa      4260
     catagtattc aaattaatga attgaatgaa gtaatagaag tagtcaatag aggcaataat      4320
     caaccattta agcgcaataa gtaaaggtga cagaagatta gaacttttaa tatttaattt      4380
     acaacacttt accgaataca ttgaagatat aaaactgaat tataagtcaa atcaattacc      4440
     aacagaatgt agatattcaa aaacacataa caatattgga ataacttatg tagaaccaaa      4500
     cataatttta acttggaaat tatcaaaaat tgtattaaat gaaaactgta taactaatag      4560
     agaaattata atagaaggag acaatataat aaaagatttt aattgttctt ttcaaataga      4620
     aaacatataa attagaagca caacactaga ctacacacaa acgaggctta attttaaggg      4680
     tggggt                                                                 4686
//
ID   QUASIMODO-u2_LTR repbase;    DNA;    INV; 485 BP.
XX
AC   .
XX
DT   07-DEC-2019 (Rel. 24.12, Created)
DT   07-DEC-2019 (Rel. 24.12, Last updated, Version 1)
XX
DE   QUASIMODO-u2_LTR is an LTR part of Gypsy-related retrovirus
DE   QUASIMODO-u2.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   QUASIMODO-u2_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-485
RA   Bao W.;
RT   "LTR retrotransposons in the Drosophila melanogaster genome.";
RL   Repbase Reports 19(12), 2705-2705 (2019).
XX
DR   [1] (Consensus)
XX
CC   LTRs are 96% identical to each other. In the genome, it is often
CC   observed embeded in a larger duplication fragment.
XX
SQ   Sequence 485 BP; 166 A; 102 C; 73 G; 143 T; 1 other;
     agtgacatat gtaatgctca accacataac atatatctac aacatatacc wgccacttta        60
     tatattcttt tacttagcaa caatagaaca tagaaccaag aatgccttag cacataagat       120
     aaacaattat tagaacccca acttcttggt gacaataaca aattcgtccg atgtaaaaaa       180
     tttaacataa acatccgcag tcttattcgt tattcccact agaagggtga aagctgctta       240
     cacagcttca cggatcaaaa ctttccacgt atttcaaact ttgctgatct gtatccatgc       300
     gcaatccact caagagagcg cctaattaac gtaaacataa atgagagcct atgtacgctc       360
     aatatgaaga agtaaattag ctcagccaag ggtttgctaa gcgttcgctt tgcaaattag       420
     atttagattt tattcatact tcaattgtgt aagacgtgaa tttgtctccg acgttcgctt       480
     aagtt                                                                   485
//
ID   QUASIMODO2-I_DM repbase;    DNA;    INV; 5456 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 4)
XX
DE   Drosophila melanogaster retroviral like element QUASIMODO2,
DE   internal consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; pol domain; MCCLINTOCK; QUASIMODO2-I_DM.
XX
NM   QUASIMODO2-I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RA   Gentles A. and Jurka J.;
RT   "Drosophila retroviral-like element QUASIMODO2.";
RL   Direct Submission to Repbase Update (30-NOV-2004).
XX
RN   [3]
RP   1-5456
RA   Jensen S.;
RT   "Update and sequence correction.";
RL   Direct Submission to Repbase Update (28-FEB-2011).
XX
DR   [3] (Consensus)
XX
CC   There are 5 nearly perfect copies in the genome - >99%
CC   similarity to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           781..2061
FT                 /product="QUASIMODO2-I_DM_1p"
FT                 /translation="MAVAAPSPIILSDSNMIQVERQINGVEQFNGDPQTLY
FT                 TFISRIDFILALYQTTDERQKLTIFGHIERNIAGEVIRTLGVTNLTTWTEL
FT                 RTHLILNYKPQRPNHLLLEDFRNTQFRGNVREFLEEAERRRQILTNKLDLE
FT                 SDTAETTLYNQLIRTSIETLILRLPIHIQLRIVKCEIPNLRSLINILQEKG
FT                 IYEIATTYKNNTKPVSNPIKSPNNATHRQTTNYYNHTTPFQPSYNAMYQPI
FT                 RQPISYIPPQLPRTNPNPFSQYQYRQLHPQPNVSVIAQPRPLNRQHTFDQN
FT                 RPGLSYSNALNTRENITTGGPALKRQRPSDSGQSRMSFDEAHYQEELDQTH
FT                 QQFNPYMHYGNHPQYPFDLYMPYGPPPNNIPIYYMPYDPPQQHPVGIQEMA
FT                 EAREEPTEPPMELITEAQTAENFRPQASEQANS"
FT   CDS           2025..5141
FT                 /product="QUASIMODO2-I_DM_2p"
FT                 /translation="EFSAPSLGTSQFIIIKHKGLNLKCLIDTGSTVNMATQ
FT                 NFFKLPIQEIAKKINSSNGQFIAQKKVTLPKNNLFPKPYDFFIYPFSTKYD
FT                 LILGRQLLDEGTTSVNYGPRTVTIYGHVHEMIDAFLPSEEIHIQDTQNNSF
FT                 RLDHLNSEEKAKLITLLKEFQDLQYKKGDQLTFTNNVKHTIRTSHNDPVYR
FT                 KPYGYAPGLDTEVENQIKEMLDQGIIRESNSPYCSPIVVVPKKPDISGQKK
FT                 YRIAIDYRYLNEITIADKYPIPNMDEILSKLGGCNYFTTIDLIKGFHQIEM
FT                 DPESIPKTAFTTKTGHYEYTRMPFGLKNAPATFQRCMNDVLRPLLNKICMV
FT                 YLDDIIVFSASLEEHLQSLRAVFQALSNANLKLQLDKCEFLKHDTYFLGHM
FT                 VSPEGIRPNPEKLRAIENYPLPTKPKEIKSFLGLTGFYRKFIPHFAQIAKP
FT                 LTTCLKKDKKVDIKNPEYIEAFKRLKLLISNDPILRSPDFKKKFVLTTDAS
FT                 NVALGAVLSQDGHPISYISRTLNDHETNYSTIEKELLAIVWATKTFRHYLL
FT                 GRHFEIASDHQPLCWLHKMKEPNAKLTRWKFRLAEYDFDIKYVKGKENHVA
FT                 DALSRITIEEAFFTEATQHSAQEDNQNLISLTEKAVNNYNRQVIFTKGPEK
FT                 VKQENYYKKKIIHISYETLTHKKAKQYLIDYFVNNHSALYIDSDADFETIQ
FT                 AAHKEIINPSTTKVIRSLTLLKNIKSYAEFKELILQSHEKLLHPGIQKTKK
FT                 LFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTKVPFKLTPSIEFCRDK
FT                 FVIDIYSVEGKHYLSCIDTYSKFATLEQIKTKDWIECKNALMRIFNQLGKP
FT                 KLLKADRDGAFSSLALKEWLETEGVELQLNTTKTGVADIERFHKTINEKIR
FT                 IINTMKNTETDLSKIETILYTYNHKTKHDTTGQTPAHIFLYAGQPTLNTQE
FT                 LKRTKIDKLNKGREDHDIDTRYRKGPLQKGKLDNPYKPTKNVEQTDADHYK
FT                 ITNRNRAMHYYKTQFKKRKKINQTHTPTQMATS"
XX
SQ   Sequence 5456 BP; 2254 A; 1136 C; 815 G; 1251 T; 0 other;
     tggcgcagtc ggtaggataa ctcaaagatt gcttgatgcg aaaatataaa atttttaatt        60
     cctgtaatct gtgatatccg ccaaagaact tacgtagtgt tactgtgaaa gtgaagtgtt       120
     gaccattaat acgcctacac ttaaaagaac agtgagacac atctgtttaa acaacagtga       180
     acttccaaca tttaccggag ctataaatcc agaatttttt tttggttact ccgaacaagt       240
     gaattgctgg aaaataaaaa ataaaaaaaa aagaacctaa aactaaatat attaaggaat       300
     taccaaataa gtgaaaaaat taaaatctaa gtgaaagaaa acataaggaa gtaaacccaa       360
     atcaatcagt taaaaaaaaa aatctctaat gcgaactatt aaataagtgc atataaaaca       420
     aaactatata cacttaaaga aaatatatat ctaaataaac tctatctaag ctcaacggaa       480
     aataacaaaa gaaataaatc ttaacgtgtt atcaagagag gagagttata gacttcaaac       540
     gtaacataag tgaaaaatca ataggagtga ataaaattta aattaagaca aataaaaaac       600
     tgaagatata aagtttgaat aaattaaaaa taaactaaaa ctatacaata caaaaataaa       660
     aataacaata ataaaattat gaaataaccg ctactcacga aacatcagca actataaaca       720
     tttaaaaaca aaaaaaaaag aaaccaacaa ttttgtactc taataaaaaa aaaaaaaaaa       780
     atggcagtag cagcaccaag cccaataata ctgtccgact cgaacatgat tcaagttgaa       840
     cgacaaataa atggagtcga acaattcaac ggggacccac agaccctgta tacgttcatc       900
     agccgcatcg atttcatcct ggcactatat caaacgaccg acgaacggca gaagctcacc       960
     atcttcggac acattgagcg caacatcgcg ggagaggtca tccgcacact aggagttacg      1020
     aacctcacca cctggacgga actcaggact catctgatcc taaactacaa accccagaga      1080
     ccaaatcatc tactattgga ggacttccgg aatacccaat tccgaggtaa cgttcgtgaa      1140
     tttttagaag aagccgaacg tagacggcag atattaacaa ataagttaga cttagaaagc      1200
     gacactgcag aaactaccct gtataaccaa ctaatacgaa ccagtataga aacattaatt      1260
     ctaagattac caattcacat acagttaaga atagttaaat gcgaaattcc gaatttaaga      1320
     tcattaataa atatattgca agaaaaggga atttatgaaa tagcaactac atacaagaac      1380
     aatacaaagc cagtctcaaa tcccattaaa tcacctaaca atgcaactca cagacaaaca      1440
     actaactact ataatcatac aacaccattc caaccatcat acaacgccat gtatcaacca      1500
     attcgccaac caatttcata tataccacct caattaccca gaactaaccc taatccgttt      1560
     tcccaatacc aataccgtca acttcaccct caacctaacg tatctgttat agctcaacct      1620
     agaccattga atcgtcaaca tacatttgac cagaaccgac caggacttag ttattcaaac      1680
     gcactaaata caagagaaaa tataacgacc ggtggaccag cactaaagag acaacgaccg      1740
     tctgacagtg gacaatcacg tatgagtttt gatgaggctc attaccaaga agaattagac      1800
     caaactcatc aacagttcaa tccttacatg cattacggga atcatcccca atatcctttc      1860
     gatctttaca tgccttacgg gccgcccccc aacaacatcc cgatttatta catgccttac      1920
     gaccccccac aacaacatcc ggttggcata caagagatgg cagaggcacg agaagagcca      1980
     actgaacctc ctatggaatt aataacagaa gctcaaacgg ctgagaattt tcggccccaa      2040
     gcctcggaac aagccaattc ataattatta aacacaaagg actcaattta aaatgcttaa      2100
     tagacacagg ctcaacagta aatatggcca ctcaaaattt tttcaaatta ccaatccaag      2160
     agatagcaaa gaaaataaac tcaagtaatg gccagttcat tgcacaaaag aaagtaacgt      2220
     tacccaaaaa taatcttttc cctaaaccat acgatttttt catatatcct ttttcaacta      2280
     aatacgactt gattttagga cgacaattac ttgacgaggg aactacatca gtaaattacg      2340
     gaccccgtac agttacaata tacggacacg tgcacgaaat gatcgatgcc ttccttcctt      2400
     cagaagaaat acatattcaa gatacacaga ataattcctt taggctagac cacttaaatt      2460
     ccgaagaaaa agcaaaattg ataaccctcc taaaagaatt ccaggacctt caatataaga      2520
     agggagacca gctcacattc actaataacg taaaacacac tattagaaca tcccataatg      2580
     acccagtata cagaaagcct tacggatacg cacccggact agataccgaa gtagaaaacc      2640
     aaataaaaga aatgttagat cagggaataa tccgagaaag caattcccct tattgtagcc      2700
     ccattgtagt agtacccaag aaaccagaca tctccggaca gaagaaatac agaatagcca      2760
     tagactaccg ttacctcaat gaaataacaa tagcagacaa atacccaata ccaaatatgg      2820
     acgaaatctt aagcaagtta ggaggctgca actattttac tacaattgac ttaatcaaag      2880
     ggtttcacca aatagaaatg gaccccgagt ctatccccaa aacagccttc acaactaaga      2940
     cagggcatta cgagtatacg cgtatgccat ttggactgaa aaacgcccca gctaccttcc      3000
     aacgatgtat gaacgatgta cttcgtccac tattaaataa aatctgtatg gtatacttgg      3060
     acgacattat tgtattttca gcttccttag aggaacatct tcaatccctt agagcagtct      3120
     ttcaagcatt atctaatgct aatctaaaac tccaattaga taaatgcgag tttttaaaac      3180
     acgacacata tttcttagga catatggttt ctccagaagg tataagacct aacccggaaa      3240
     aactacgagc aatagaaaat tacccccttc ctactaagcc gaaggagata aaatcatttt      3300
     taggactcac aggtttttat agaaagttca taccccattt cgcacagatt gcaaaacccc      3360
     taacaacatg tcttaaaaag gacaaaaaag tagatattaa aaacccggaa tatattgagg      3420
     cattcaaaag gttaaaactc cttatttcaa acgatcccat acttcgatca ccagacttca      3480
     agaaaaaatt tgtactcaca acagacgcta gtaatgtagc tctaggagca gtactttctc      3540
     aagatggtca ccccataagt tatattagca gaacacttaa cgaccatgaa acaaactaca      3600
     gtacgattga aaaagaacta ctagctattg tttgggcaac gaaaacgttt agacactatt      3660
     tgctaggtcg acattttgaa atagcaagtg atcaccaacc gttgtgctgg ttgcacaaga      3720
     tgaaggagcc caacgctaaa ttaacaaggt ggaaattcag acttgcagaa tacgacttcg      3780
     atattaaata cgtcaaaggc aaagaaaatc atgtagcaga tgccctatcc aggattacta      3840
     tagaggaagc gttctttact gaagctacac agcacagcgc ccaagaagac aaccagaatt      3900
     taatttccct aacagaaaaa gcggtaaata attacaatag acaagtcatt ttcactaagg      3960
     gaccagaaaa agtaaaacag gagaattatt ataagaaaaa gatcattcat atttcgtacg      4020
     aaacactcac tcataaaaaa gccaaacagt atttgataga ttacttcgta aacaaccaca      4080
     gcgctttata catagacagc gacgctgatt ttgaaacaat acaggcagcc cataaagaaa      4140
     ttatcaaccc aagcaccaca aaggtaatta gaagcctaac tttactaaaa aacattaaat      4200
     catatgcaga atttaaggaa ttaatccttc aatcccatga aaagttattg cacccaggaa      4260
     tccagaaaac taagaaatta tttagtgaaa actacttttt tccaaatagc caactacaaa      4320
     tccaaaacat tataaacgaa tgtcaagttt gtaatctagc aaagtcagag catagaaata      4380
     ccaaagtccc atttaaactc acgccaagta tagaattctg tagagacaaa ttcgttatag      4440
     atatttattc agtcgaaggc aaacactatt tgagctgcat agacacttat tcaaaattcg      4500
     ctacactaga gcagataaaa accaaggact ggatagaatg caagaacgcc ctgatgcgca      4560
     tatttaatca attgggaaaa ccgaagctat taaaagcaga cagagatggt gcattttcaa      4620
     gtctagcatt aaaagaatgg ttagaaacag aaggagtaga actacagcta aataccacaa      4680
     aaacaggagt agcagatata gaacgttttc ataagaccat taacgaaaaa ataagaataa      4740
     tcaatactat gaaaaatact gaaacagacc tgagtaaaat agaaactata ctttatactt      4800
     acaatcacaa aacaaaacat gacaccacgg gacaaacgcc cgctcacata ttcttatacg      4860
     caggacaacc taccttgaac acgcaggaac taaagagaac taaaatagac aaattaaaca      4920
     aaggtagaga agaccacgat atcgacacaa gatacagaaa aggaccatta caaaaaggca      4980
     aattggacaa cccatataaa ccaaccaaaa acgtagaaca aacagacgct gaccattaca      5040
     aaattactaa tagaaacaga gctatgcatt actacaaaac acaattcaaa aaacgaaaga      5100
     aaattaatca aacccatacc ccgactcaaa tggctaccag ttagactaca cagattcaca      5160
     attatatttt gagaaaagaa aacaaagtgt atagtaatga aaataaagaa ataaacaatg      5220
     aatgtgtcac caatataatt aagcacctaa atccaatctg taattttaag ccaataccca      5280
     caaatgaatt aatgaaatat atagaataat gatgtataca aaactaaaat taagaaaaaa      5340
     caaaaaaaaa aaaatcagga cataccacca caaactggaa tggaagaagt tccactaccc      5400
     ttactatatc catcagtccc agcccaagta taggcttatc tttaagggaa gggaag          5456
//
ID   QUASIMODO2-LTR_DM repbase;    DNA;    INV; 498 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   29-MAR-2007 (Rel. 12.04, Last updated, Version 2)
XX
DE   Drosophila melanogaster retroviral like element QUASIMODO2, LTR
DE   consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; pol domain;
KW   endogenous retrovirus; MCCLINTOCK; QUASIMODO2-LTR_DM.
XX
NM   QUASIMODO2-LTR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RA   Gentles A. and Jurka J.;
RT   "Drosophila retroviral-like element QUASIMODO2.";
RL   Direct Submission to Repbase Update (DEC-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 498 BP; 151 A; 107 C; 69 G; 171 T; 0 other;
     agtgacgtat tcacgccaac tcatcacgct cagttaattg aatattcgcg ccacccaaac        60
     tgggccgctc ttgtaaacgg attcccaagc tctcctcaac gtaaacatcc aagaacatca       120
     catgatttta ccgtttaaag ctattttctg cgttatctgc gtgtcgatcg ttattacttc       180
     acttcacaac cttgggagat attccgtttt tttcctattc tttatttctg taacccatag       240
     aggcccctcc tcaattctca ctcacatttg taatcagtct taagttgaaa gttagaccgt       300
     aaagttcaat aagtcttaaa ccgatattta ataaaaaaca aaaccgaatt tattcagtgt       360
     ttaatttatt tcggagttga tcctagttta aatacggatc atttgttcga cttaaaaaaa       420
     taaaaactat ttaactttca gcgttgatct tagtttaaat acggatcatt tgttcggctc       480
     aattaaaaac tatttaac                                                     498
//
ID   QUASIMODO_I repbase;    DNA;    INV; 6060 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   QUASIMODO_I is an internal portion of QUASIMODO retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Retrovirus;
KW   gag-like; pol; env-like; QUASIMODO_LTR; QUASIMODO_I;
KW   internal portion.
XX
NM   QUASIMODO_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6060
RA   Kapitonov V.V. and Jurka J.;
RT   "QUASIMODO_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   [1] (Consensus)
XX
CC   LTR of QUASIMODO retrotransposon is listed in Repbase Update as
CC   QUASIMODO_LTR. It can be an active retrovirus since some of
CC   its copies are identical.
CC   QUASIMODO has strong target-site specificity: it generates
CC   duplication of the TATAT target-site upon its integration
CC   into genome.
CC   QUASIMODO_I internal sequence encodes gag (position 406-1413),
CC   pol (position 1344-4613) and env-like (position 4477-6033)
CC   polyproteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           406..1410
FT                 /product="QUASIMODO_I_1p"
FT                 /translation="MAQPSEQIMILSELHLNQALGQIRHISTFDGSTRELA
FT                 SFVRRVDFVMSLYPTTDKRQHSVLYSAIERQLSQHAQEVSQLQQCNTWAEL
FT                 RSVLIDEFKTQIPYEELLRRLYNTYWSGSIRKFVEELENKMFEISSKLSLE
FT                 NNYTNTTLYTAAMANTIKDVIYKRIPDRMFMTLARYDITTTTLLRQVAQRE
FT                 GLYDTIVLNTEKAKAKLNSPSTLQSSSKNNGSQKNKGNNNDQGIKPYYIQA
FT                 QQSQNRNNYASNNSKKVESNQATYNEFKQKLEQGRAQNALNFQKPTSYSTT
FT                 NQPQKRQRESSSGQSKMDTSENFHQLASGSESEVEEEHTHSYK"
FT   CDS           1416..4610
FT                 /product="QUASIMODO_I_2p"
FT                 /translation="MNDIKLKCLIDTGSSINLMSKNFFNCPINSKAPLDVH
FT                 TINGQIILKSKITLKPSKLCPTKQTFYLHKFSEKYDILLGREYLEDSKATI
FT                 CYTSNTVTLNKYTFKLRLEDINEEEETPKESLKENLLDSPNIEYVNYVIDN
FT                 ELNETNEFRLDHLNDEERKALTSVLYEFSDIQYKEGENLTFTSTTKHVITT
FT                 KHEDPIYRRPYKYPQSFDEEVENQMKDMIRQGIIRKSNSPYCSPVWVVPKK
FT                 PDASGKSKFRIVIDYRNLNEITVDDKYPIPVMDEILDKLGNCQYFTTIDLA
FT                 KGFHQIQMDENSIAKTAFSTKNGHFEYTRMPFGLKNAPATFQRCMNNLLAD
FT                 LIYKNCLVYMDDIIVYSTSLEEHIMSLRKVFLKLREANLKLQLDKCEFLKK
FT                 ETEFLGHIITTDGIKPNPAKIKAVVNFPIPKSTKEIKSFLGLCGFYRKFIP
FT                 NFAKIAKPMTLRLKKGSIINIKDSDYYLAFEKLKVLITSDPILIHPDFKKS
FT                 FSLTTDASNFAIGAVLSQEHKPICYASRTLNEHEVNYSAIEKELLAIVWAT
FT                 KYFRSYLFGRKFEIHSDHRPLVWLDSIKEPNMKLQRWKIKLNEFDYHIKYL
FT                 PGKENHVADALSRVKIEENFLGETSSNISLPTQATIHSAQEDNQSYISLTE
FT                 RPINYYNRQIEFIKDDNNNVETKRYFHKTKIKIHYIEMTNVHAKELIKEYL
FT                 CTKRSVIFFHNEIDFLTFQNAYIEIVSPNNITKVMKSNIKLKDIETYSEFK
FT                 EIIIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISKTE
FT                 HRDTKLRYELTPETFNPREKYVIDFYLINNKTFLSCIDIYSKYAALIEVSS
FT                 RDWLEAKRALLKIFNEMGKPSEIKADKDSAFICSALHLWLRSENVNINITT
FT                 SKNGISDIERFHKTVNEKLRIINSESDPENKITQFETILYVYNHKTKHNTT
FT                 GRTPADIFLYAGTPAYDTQKEKQSKIDKLNKDRHSYEVDTRYKQAPLVKSK
FT                 TTNPFKKTGHVEQIDEKHYEETNRGRKVEHYKSKFKKQKRINKSKYNSSST
FT                 PENQVGSD"
FT   CDS           4477..6030
FT                 /product="QUASIMODO_I_3p"
FT                 /translation="MRNITKKQIEEEKLNIINLNLKNKRELIKVNTIPAQL
FT                 PKIKWGPIKQLFIITLIICFIRAVRGQSLEVNPIQAKNGYLIFKTGSINIP
FT                 INYEYHYLSVNLTKTEQTFANLIKQAEEYGTIAQIQYLTEKLDREMNGIRI
FT                 IKRNKRGLINIIGTAYKYLFGTLDQNDKEELEQKIYDLSQHSIQINELNEV
FT                 IEVVNRGIEVINHLSAISEGDRRLELLVFNLQQFTEYIEDIELGMQLTRLG
FT                 IFNPKLLRHDPLSHVNSEKLLNIKTSTWLKSDANEILIISHIPRDIIKTAL
FT                 FNIVPYPDKDNNILIENVNDKYYIQDNQVYKQNSGKPIINKCITGILNQIP
FT                 TECRYSKTHNNIGITYVEPNIILTWKLSKIVLNQNCIINREIIIEGDNIIK
FT                 AFNCSVQIENILITSTTLDYTQTVYINNNVTKLEPLSYLNAKEIIKEHTNT
FT                 YNTLQIITLTILAIIILTLILYFIYKYKGIPKKLIVKYKKENPKQIEQQNN
FT                 TTTENINTVLDTNPVLYPRISA"
XX
SQ   Sequence 6060 BP; 2532 A; 1030 C; 885 G; 1613 T; 0 other;
     tggcgcagtc ggtaggatcc gcgtgtgaac ataatctctt agagctaata gattagttcg        60
     agattaataa agcgcaactc gtgacgaaca aagtttcgct tgtgcttcag ttcatacaaa       120
     gcagatccgc aaaagaactt atgtgacaaa atatttgtga acagttatct aactctcgat       180
     gttggatact attaatacaa atataaatta aaaaactgca agtgaccatt aaagtgtgac       240
     ccaccaaaat aaataaaagg tgtgactgtt accaggtcag tgttgtgtag cccatctagc       300
     attgattgga ctgctacaaa ggtgtgcgaa ttttaaataa ataaaataaa accccggtat       360
     caatctacca agtgattcaa agaaaaatca actatagcca acaacatggc acaacccagc       420
     gaacaaatta tgattctatc tgaattacat ttgaatcagg ctttgggcca gattcgtcac       480
     atctcaacat ttgacggttc cacaagagaa ctggcatcat ttgtgagacg tgtggacttc       540
     gtgatgtccc tatacccgac aacagacaag aggcaacata gtgtactcta cagtgccatc       600
     gagaggcagc tgtcccaaca tgcacaagaa gtatcccagc tacaacagtg caacacttgg       660
     gctgaactac gatcagtcct cattgatgaa tttaaaaccc aaatcccata cgaagagttg       720
     ctaagaagac tttacaacac ctactggagt ggtagtattc gtaagtttgt agaagaacta       780
     gaaaataaga tgttcgaaat ttcaagtaaa ttatcattag aaaataatta cacaaataca       840
     actctttata ccgccgcaat ggctaatact attaaagatg taatttataa aagaattcca       900
     gacagaatgt tcatgacatt agcaagatat gatattacaa caacaacatt attaagacaa       960
     gtagcacaaa gggaaggcct ttacgataca attgtattaa atacagaaaa agctaaagcc      1020
     aaattaaaca gtccatctac actacaaagc agtagtaaaa ataatggttc tcagaagaat      1080
     aaaggaaata ataatgacca aggtataaaa ccttattata ttcaagcaca gcaaagtcaa      1140
     aatcgaaata attatgcaag taataattca aaaaaagttg aaagcaacca agcgacatac      1200
     aatgagttca aacaaaagtt agaacaaggt agagcgcaaa acgctctaaa ttttcaaaaa      1260
     cccacatctt attctactac taaccagccc caaaaaaggc agcgtgaaag ttccagtggt      1320
     cagtctaaaa tggataccag tgaaaatttt catcaacttg cctcgggatc ggaatcagaa      1380
     gtagaagaag aacataccca ttcatacaaa taaccatgaa cgatatcaaa ctcaaatgtt      1440
     tgattgacac aggttcatca ataaatttga tgagtaaaaa ttttttcaat tgtccgatca      1500
     actcaaaagc tccattagat gtacacacaa taaacggtca aattatttta aaatcaaaaa      1560
     ttacattaaa acctagtaaa ttatgtccga caaagcaaac attttattta cataaattct      1620
     cagaaaaata cgacattttg ttaggcaggg aatatttgga agattccaaa gcaactatat      1680
     gctatacatc caatacagtc actttaaata aatacacatt taaattgcga cttgaagata      1740
     ttaacgaaga agaggaaaca cctaaagaga gtttaaaaga aaacttatta gattccccaa      1800
     atattgagta tgtcaattat gtaattgaca acgaactcaa tgaaacaaat gaatttcgac      1860
     ttgatcatct aaacgatgaa gagaggaaag ccctcaccag tgtcttatac gagtttagtg      1920
     acatacagta caaagaaggt gaaaatttga ccttcacaag tacaactaaa catgtcataa      1980
     caactaaaca cgaagaccca atttacagac gtccatataa atacccacaa agcttcgacg      2040
     aagaagtcga aaaccaaatg aaagacatga ttcgacaagg aatcataaga aaatcgaatt      2100
     ctccatattg ctctcctgtt tgggtagtac ccaaaaagcc agatgcatcg ggaaaatcga      2160
     aatttcgcat agtcattgac tatcgcaacc tcaacgaaat aaccgttgat gacaaatacc      2220
     caataccagt aatggatgaa atattggata agcttggaaa ttgccaatac tttacaacca      2280
     ttgacctcgc aaaaggtttt catcaaatac aaatggatga aaattctata gcgaagacag      2340
     ctttttcaac caaaaatggt cattttgaat atactcgaat gccatttggt ttaaaaaatg      2400
     cacccgcaac ttttcaacgt tgcatgaata atctcttagc agatttaata tacaaaaact      2460
     gtctcgtata tatggatgac ataattgtgt attccacttc attggaagaa cacataatgt      2520
     ctttgcgaaa ggtattctta aagctcagag aagcaaattt aaaattacag ctagataaat      2580
     gcgaattcct aaaaaaggaa actgaattct tagggcacat aattacaaca gatggtatta      2640
     aaccaaatcc cgcaaaaatt aaagccgtag tgaatttccc tataccaaag tccactaagg      2700
     aaataaaatc atttcttggt ctttgcggtt tttaccgcaa atttattcca aacttcgcta      2760
     aaatagcaaa accaatgaca ttacgactaa aaaaaggctc aataataaat atcaaagatt      2820
     cagactatta cttagctttt gaaaaattaa aagtgttaat aacgtccgat cccatattaa      2880
     tacacccaga ttttaaaaag tctttttcat taactactga tgctagcaat tttgctatag      2940
     gcgcggtatt atcgcaagag cataaaccta tatgctatgc tagcagaact ctgaacgaac      3000
     atgaagttaa ttattccgca atagaaaagg aactccttgc tattgtttgg gccactaaat      3060
     atttcaggtc ctatttattt ggtagaaaat tcgagatcca tagtgatcac aggccattgg      3120
     tttggcttga ttcaattaaa gagccaaaca tgaaacttca gagatggaaa atcaaattaa      3180
     atgaatttga ctatcatatc aaatatctcc ctggtaaaga aaaccatgta gcagatgctc      3240
     tatcgagagt aaaaattgaa gaaaacttcc taggagaaac ttccagtaac atttcgttac      3300
     caacacaagc tactattcac agtgctcaag aagataacca atcttatatt tccttaacgg      3360
     aaagaccaat taattactac aacaggcaga tagaatttat aaaagacgat aataataacg      3420
     tagaaactaa aagatacttt cataaaacaa aaattaaaat tcattacata gaaatgacaa      3480
     atgtccatgc caaggaatta attaaagaat acttatgtac caaaagaagc gtaattttct      3540
     ttcataacga aatagatttc cttacatttc aaaacgctta catagaaatt gtcagtccga      3600
     ataacataac taaagttatg aaatcaaaca tcaaattaaa agacattgaa acatattccg      3660
     aatttaaaga aataattata aaaagtcaca gagaactttt acacccagga atagagaaac      3720
     aaactaacct ttttaaagaa aaatattatt acccagacta ccaaaagtta atacagaaca      3780
     ttattaatga atgcgaagta tgtaacatat ccaaaacaga acatagagat actaaactaa      3840
     gatatgagtt aacaccagaa acttttaatc ccagagaaaa atatgttata gatttttatt      3900
     taatcaataa taaaacgttc ctgtcatgca ttgacattta ttcaaaatat gccgctttga      3960
     ttgaagtcag tagtagagac tggctggaag caaaaagagc tcttcttaaa attttcaatg      4020
     aaatgggaaa accgtccgaa ataaaggccg ataaagattc agcttttata tgttccgcgt      4080
     tacatttatg gcttaggtcc gagaatgtga atataaatat cacaacaagt aaaaatggaa      4140
     tttctgacat tgaaagattc cataaaacag tcaatgaaaa gttaagaatc attaatagtg      4200
     agtccgaccc agaaaataag ataacacaat ttgaaactat tctctatgta tataaccaca      4260
     aaactaaaca caatacaact gggagaacac cagctgatat tttcctttac gcaggaacac      4320
     ctgcatatga cacccaaaaa gagaaacaat caaaaataga taagttgaat aaagatagac      4380
     atagctatga agtagatact agatataaac aagcaccatt ggtaaaaagt aaaacaacta      4440
     acccatttaa gaaaacagga cacgtagaac aaatagatga gaaacattac gaagaaacaa      4500
     atagaggaag aaaagttgaa cattataaat ctaaatttaa aaaacaaaag agaattaata      4560
     aaagtaaata caattccagc tcaactcccg aaaatcaagt ggggtccgat taaacagtta      4620
     ttcataataa cacttataat atgtttcatc cgtgccgtcc gtggtcaaag cctagaggtg      4680
     aacccgatac aagctaaaaa tggatatctt atatttaaaa caggatcaat taatatacct      4740
     ataaactatg aatatcacta tttgtccgta aacttaacaa agaccgaaca aacttttgca      4800
     aatttaatta aacaagctga agaatatggt actatagccc aaatccaata tttaactgaa      4860
     aaattagaca gagaaatgaa tggaataaga ataataaaac gcaataaacg tggtttaatt      4920
     aatattatag gtaccgcata taaatacctt tttggcactt tagatcaaaa tgacaaagaa      4980
     gaattagaac aaaaaatata cgatctttct caacatagta ttcaaattaa tgaattgaat      5040
     gaagttatag aagtagtcaa tagaggcatt gaagtaatca accatttaag cgcaataagt      5100
     gaaggtgaca gaagactaga acttttagta tttaacttac aacagtttac cgaatacatt      5160
     gaagatatag aacttggtat gcaattaaca agacttggta tttttaatcc caaattatta      5220
     agacatgatc cattatcaca tgtaaattcc gaaaaattgc taaatataaa aacttctacg      5280
     tggttaaaat cagatgcaaa tgaaatactt attatttccc atattcctag agacattata      5340
     aaaactgcac tttttaacat cgtaccatat ccagacaaag ataataatat acttatagaa      5400
     aatgtaaatg ataaatatta tattcaagat aatcaagttt acaaacaaaa ctcaggaaaa      5460
     ccaataataa acaaatgtat tacaggaata ttaaatcaaa taccaacaga atgcagatat      5520
     tcaaaaacac ataacaatat tggaataact tatgtagaac caaacataat tttaacttgg      5580
     aaattatcaa aaattgtatt aaatcaaaac tgtataatta atagagaaat tataatagaa      5640
     ggagacaata taataaaagc ttttaattgt tctgttcaaa tagaaaacat attaattaca      5700
     agcacaacac tagactacac acaaacggtc tatatcaata acaatgtaac aaaattagaa      5760
     ccattatcat atctaaatgc taaagaaata attaaagaac acactaatac atacaacaca      5820
     ttacaaatta ttacattaac tatacttgct attataatac ttacacttat actatatttt      5880
     atttataaat ataaaggcat tcccaaaaaa ctaattgtta aatataaaaa agagaatcca      5940
     aaacaaatag aacaacaaaa taacacaaca acagaaaata taaatacagt acttgatact      6000
     aatcctgtat tgtatcctag aatatccgcc tgaggacagg ctaaatttaa aggatgggga      6060
//
ID   QUASIMODO_LTR repbase;    DNA;    INV; 658 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   29-MAR-2007 (Rel. 12.04, Last updated, Version 2)
XX
DE   QUASIMODO_LTR is a long terminal repeat from QUASIMODO
DE   retrovirus-like element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; LTR; Retrovirus;
KW   QUASIMODO_LTR; QUASIMODO_I.
XX
NM   QUASIMODO_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-658
RA   Kapitonov V.V. and Jurka J.;
RT   "QUASIMODO_LTR.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   [1] (Consensus)
XX
CC   QUASIMODO_LTR is an LTR from QUASIMODO endogenous retrovirus; it
CC   flanks QUASIMODO_I internal sequence and can be found as a solo
CC   LTR. TATAT target-site duplications.
XX
SQ   Sequence 658 BP; 233 A; 160 C; 103 G; 162 T; 0 other;
     agtagcatat gtgccatagt ataagaccac atatacttac acacacacac acatacataa        60
     ccacatagga acagccatac acaaaatcat agaatgcctt aggatataag tcataaaatc       120
     atgtatccaa taagaaccca aattctggtg acaataacaa atccagccta ccctaatgta       180
     aacattaaca tccgctgccg aatcagttat tcccaccaaa gggtcaaaac cgcttacgca       240
     gctcaagttc tcggctgatc agtacccatg agtgatccac tcaagaaggc acccaatcca       300
     acagacataa acatccgcag ccgcattcgc gactcccacc agagggtcaa aactgctaac       360
     acagctttaa gggtcaaaac tttccacgta gctcaaactc ggctgatcta tatccatgcg       420
     caatccactc aagagagcgc ctaattaacg taaacataaa tgagagccta tgtacgctca       480
     atatgaagaa gtaaataagc tcagccaagg gtttgctaag cgttcgcttt gcaaattaga       540
     tttagatttt attcatactt caattgtgta agacgtgaat ttgtctccga cattcgctta       600
     agtttttgat caataaaaat actttttttt ataaaccaac aaaccgcgaa gttgtaat         658
//
ID   QUETZAL     repbase;    DNA;    INV; 1680 BP.
XX
AC   L76231;
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   25-SEP-2007 (Rel. 12.10, Last updated, Version 3)
XX
DE   Quetzal, a DNA transposon of the Tc1 superfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; TIR;
KW   Tc1 superfamily; Quetzal.
XX
NM   QUETZAL.
XX
OS   Anopheles albimanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1680
RA   Ke Z., Grossman G.L., Cornel A.J. and Collins F.H.;
RT   "Quetzal: a transposon of the Tc1 family in the mosquito
RT   Anopheles albimanus.";
RL   Genetica 98(2), 141-147 (1996).
XX
DR   GenBank; L76231; Positions       1    1680.
XX
CC   TA target-site duplication. The closest known element to the
CC   Quetzal is the Uhu transposon from D.heteroneura. It has 236 bp
CC   TIRs (position 1-236 and 1445-1680). The transposase is encoded
CC   by the sequence 373-1398.
XX
FH   Key           Location/Qualifiers
FT   CDS           373..1395
FT                 /product="QUETZAL_1p"
FT                 /translation="MTREELSVSKRQDIIRLHGAQGKSYTEIAMLTNINRN
FT                 TVARVIQRYKYEGRVSNLPRKGRPSVCTDRMRRAIKRLVDAEPEISAQSVA
FT                 IVLNERHGIAISCETVRRYIHKFGYKAYNRRKKPQISPINRKRRLEFAKKY
FT                 VNHPPEFWKKVLFTDESKFNIFGWDGTIKVWRPPGEGLNPKYTAKTVKHNG
FT                 GGVLVWGCMAANGVGNLQVIDGIMDQYVYINILKQNLGPSLEKLGMSQDYW
FT                 FQQDNDPKHTAFNSRLFLLYNTPHQLKSPPQSPDLNPIEHAWELLERKIRQ
FT                 TRIKNRVDLENKLKEAWITISEDYTQNLVNSMPRRLAEVIKMKGYATRY"
XX
SQ   Sequence 1680 BP; 561 A; 320 C; 355 G; 444 T; 0 other;
     cacttctcca caaaagtgaa tacacagcaa acagttttag gaataaatgc ctctagttgt        60
     gcatagaccg aattaaaaat atgggaaaat tatcaattat gctttgacct atttgcaatc       120
     gattgacgct tggtacgatg tccgtccgat gttgaagttc cgagaaattc tcggaaaact       180
     gctgggatgc ctcaaaatcg ttccacaaaa gtaagtacac agcacaggtg ttcgttttgt       240
     tttgaatcgt agataaactt ttaattgatg cgttaatgat cgattgggtg caatatgctc       300
     agtcgttcag atagtttcga ggtgaacagt ttttagcttc caaatcgact gcagtttacc       360
     ataattccaa aaatgaccag agaagaactt tctgtctcta aaagacaaga tattataaga       420
     ttgcacggcg ctcagggcaa aagctacaca gaaattgcaa tgttaacaaa cattaataga       480
     aatactgtcg ctagggtcat ccagcggtac aaatacgagg gccgtgtatc taatttacct       540
     agaaagggtc ggccctcggt gtgcactgat cgtatgcgac gggcgataaa acgattggtg       600
     gatgctgaac cagaaatcag tgctcaatct gtagctatag tacttaacga aaggcacggt       660
     attgccattt catgtgagac agtgcggcgg tacattcata aatttggcta caaggcttac       720
     aacaggcgca aaaaacctca gatcagccct atcaatcgga aacggcgatt agaatttgcg       780
     aaaaaatacg ttaaccaccc acccgagttt tggaaaaaag ttttatttac agacgagagt       840
     aaatttaaca ttttcgggtg ggatggcaca ataaaggttt ggcggccacc cggagaaggc       900
     ctgaacccta aatacacagc caagacggta aaacataacg gagggggtgt gctagtttgg       960
     gggtgtatgg cggcaaatgg tgttggaaat ttgcaagtta tagatggaat tatggaccaa      1020
     tatgtttata tcaacatttt aaagcaaaat ttaggaccaa gtttggaaaa attagggatg      1080
     tctcaagatt attggttcca acaagacaat gatccaaaac acacggcatt caattcacgg      1140
     ctatttttgt tgtacaacac tccccaccag ctaaaatcac cgccccaaag tcccgacttg      1200
     aacccaatag aacatgcttg ggaattactt gaacgaaaaa ttcgtcaaac acgaattaaa      1260
     aaccgtgtcg atctagaaaa caaattaaaa gaagcgtgga tcacaatttc tgaagattat      1320
     acgcaaaatt tggtaaattc aatgccacga aggttggcag aagttataaa aatgaaaggg      1380
     tatgctaccc gatattgaaa acgttacaaa atgtcgaagg acacgaaata aaaacgaaat      1440
     acccaacgaa cacctgcgct gtgtacttac ttttgtggaa cgattttgag gcatctcagc      1500
     agttttccaa gaatttctcg gaacttcaac atcggacggc atcgtaccaa gcgtcaatcg      1560
     attgcaaata ggtcaaagca taattgataa ttttcccata tttttaattc ggttctatgc      1620
     acaactagag gcatttattc ctaaaactgt ttgctgtgta ttcacttttg tggagaagtg      1680
//
ID   R1          repbase;    DNA;    INV; 5092 BP.
XX
AC   M19755;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   08-NOV-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   R1 repeat family.
XX
KW   transposon; Repetitive element R1; R1.
XX
NM   R1.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5092
RA   Xiong Y. and Eickbush H.T.;
RT   "The site-specific ribosomal DNA insertion element R1Bm belongs
RT   to a class of non-long-terminal-repeat retrotransposons.";
RL   Mol. Cell. Biol 8(1), 114-123 (1988).
XX
DR   GenBank; M19755; Positions      44    5135.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..1849
FT                 /product="R1_1p"
FT                 /translation="FGTMSEEERELFSPRVSLARSPPRGPTAPLPAPMPPP
FT                 APRGVRAGAAMSAKGRRTGLHIPVASGLSSSAPVTPVDPVAGVPSFPIPVA
FT                 SGAPTGPLDVAAQGRLELLERANRAVRGIMSVATAASKLNKSEVNLISELG
FT                 RDILAVVGALGIQLSDKELVVERLRSAEASARRDSVAPSMAAGAAAGSGTG
FT                 PATFATVLRTGPGGVPRSIGASQGPSLAFYPSEGNAELKTAEDTKKEVKKA
FT                 IDPKSMAIGIQSVRKVGNAGVVVQTTSPGAAVKLRNAAPPSLRVTEPRRRQ
FT                 PLVAVNGVEGDPSFEEVIECLASQNLDPEEWPLTRVRAELTGAFKKGRRQS
FT                 NNTTVVFNASPRIRDALVKIGRVYVGWVACEVTDFVRVTCCNKCQQYGHPE
FT                 KFCRAKEATCGRCGEDGHRMEACKAASACCATCRRFRREAMHPTASRDCPA
FT                 RRHAEERFLNQVEYGY"
FT   CDS           1830..4982
FT                 /product="R1_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="IRSSMDIRPRLRIGQINLGGAEDATRELPSIARDLGL
FT                 DIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHITVVHI
FT                 GGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWH
FT                 SLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGESYVD
FT                 VTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPG
FT                 EPCALRRYRDRGVDWDLFRSRIHERMGSLDLEEPVAALCEKFTGVITRTAE
FT                 ECLGSLKADRTDRGYEWWTPVLDKLRVAQGRARRRWQKARRTGGEEEEQSG
FT                 RVFRDRRREYRRAMHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNV
FT                 VNGVEYAGRCSDDVSGAMRTLMWALCPDDYMSRDTPYHARVRIMAALPPSG
FT                 RDADPLSKDSLRAIIGSLKNTAPGIDGLTARIIKKALPAAEAEFVAVYARC
FT                 VVEGTFPPVWKDGRLLVLPKGNGRPLTDPKAYRPVTLLPVLGKILEKVLLQ
FT                 CAPGLTHSISPRQHGFSPGRSTVTALRTLLDVSRASEQRYVMAIFLDISGA
FT                 FDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKVSTMGC
FT                 PQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAQLER
FT                 RAHAVLGLAEGWASRNKLDFAPAKSRCIMLRGKFQRPPIVRYGSHVIRFEN
FT                 QVTVLGVSSTIASLSRHAAAIGERASRCFGKMSRVSASAWGLRYRALRVLY
FT                 MGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAAL
FT                 PVLAGVLPADLEVTRAGRRMRECEGLARELAAERRRRIDGDVLVVWQNRWV
FT                 SEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLRE
FT                 GHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDE
FT                 KNFRLLREFAIHGTRRALRANHEDCLATKNVGDVSSPRTGRMLVE"
XX
SQ   Sequence 5092 BP; 967 A; 1281 C; 1751 G; 1093 T; 0 other;
     tgacttcgcc gtcggccttg gtcgaggaca gacgtgcgtt ccgttatttc tttattttcc        60
     gtcatttaag tgtattgtgt ttctattggt gtatcggacc ctctcgtttc ggcttgaggt       120
     ttaagtcata agacgccgcg gccatcttgc tgtgtgagcg gtgtgacgag tgcgaaggcg       180
     gagtttagct cgacgtggag tcggcccctc tcgcttcctc ttgggtgccg gtccatatag       240
     gtcggtgtcc atattggatt gcgtgtgaga cggccgattt gcgtgagggc ggacccgcca       300
     tttaggtctg tgacagtgac actagtgtgc gatagtgacg ttttataatt tgctgtgggc       360
     ggtagccgcc attttgtgat agtgacactc gaggatgcga cagtgacgtt ggtttgtgtt       420
     tgtgttcgtg tgcgtgtgtg aatatctttg cgtgatagta atataatttg gaacaatgtc       480
     ggaggaggag agggagctat tttcccctcg ggtctctttg gcgcgctcgc cgcctagggg       540
     accgactgca cctctgccgg cgcctatgcc gccgccggcc ccccgggggg ttagggcggg       600
     agcggctatg agtgccaaag gccggaggac cggcctgcat atcccggttg cttctggact       660
     gtcgtcctcg gcgcctgtca ccccggttga cccagtggct ggtgtcccta gcttccccat       720
     tcctgttgcg tcgggggctc cgactggacc ccttgatgta gcagcgcagg ggaggctgga       780
     gctgctcgag cgggcaaacc gagcggtgcg cgggatcatg tcggtggcga cggcggcatc       840
     taagctcaat aagtcggagg tcaatctaat ctctgaactc ggtcgcgata tcctggccgt       900
     agttggggcc ctcgggatcc agctctctga taaggagctg gtggtcgaaa ggctccgctc       960
     ggcagaggcc tctgcacggc gtgactccgt ggcgccttcg atggctgctg gtgcggcggc      1020
     cgggtctggg actgggcctg cgaccttcgc cactgtcctc aggacgggcc ctggtggggt      1080
     cccgaggtcc attggggcct ctcaggggcc ttccttggca ttctacccgt ccgagggcaa      1140
     tgcggaactg aagacagctg aggacacaaa gaaagaggta aaaaaggcca ttgaccctaa      1200
     gtcaatggct attggaatac agagcgtaag gaaggttggg aatgcggggg tagtggtgca      1260
     gaccacgtcc cccggggccg cagtcaagct tagaaatgct gccccgccat cactgagagt      1320
     caccgaaccc aggcgccgac agcccttagt agctgtcaat ggcgtggagg gcgacccctc      1380
     cttcgaggag gtaatcgagt gcctggctag ccagaacctc gacccggagg agtggcccct      1440
     cactagggta cgagcggagc tcacgggggc gttcaaaaag gggaggcgac aatccaacaa      1500
     cactactgtg gtgtttaacg cctcccctcg catcagggac gccctcgtga agattggcag      1560
     agtgtatgtg gggtgggtcg cctgtgaggt cacggacttt gtccgggtga cctgctgcaa      1620
     taagtgtcag caatatggtc acccggagaa attttgccgg gccaaggagg ccacctgtgg      1680
     ccgatgtgga gaggatggcc accgaatgga ggcctgtaag gcagcctccg cgtgctgtgc      1740
     gacctgccgg cgattccgtc gcgaggctat gcacccgacg gcctcgcgcg actgtccggc      1800
     gcgccggcat gcggaggagc gcttcctaaa tcaggtcgag tatggatatt aggccccgac      1860
     ttcgtattgg ccaaatcaat ctgggtggtg cagaggatgc gacgagggag ctaccctcca      1920
     ttgcacggga tctcggcctg gatattgttc ttgtacagga acaatattcc atggtcgggt      1980
     tcctagccca atgtggagca caccccaagg cgggtgtgta tatccgcaat agggtgctcc      2040
     cctgcgcggt tctgcaccac cttagcagca cacatataac ggtagtgcac attggggggt      2100
     gggacttata tatggtgtct gcgtacttcc agtatagtga ccctattgac ccatacctgc      2160
     accggctcgg gaatattctt gaccggctgc ggggggctcg ggtcgttatc tgcgcagaca      2220
     ctaatgccca ctcgccattg tggcactcgc tgcccaggca ctacgtcggt cggggtcagg      2280
     aagtggctga ccgccgcgcc aagatggagg atttcattgg ggcgaggcgg ttggtcgtcc      2340
     ataacgcgga tggccacctg ccgaccttca gtacggcgaa cggagaatct tatgtcgatg      2400
     tcacgctgtc tacgcgggga gtacgcgtgt ctgaatggcg tgtaactaat gaatcatcga      2460
     gcgatcaccg gctcattgtg tttggggtgg ggggcggtac aacaggggag cgggacgagg      2520
     acgaggaggc gcggagcgat ttgaggccgg gcgagccgtg cgcactgcgt cggtaccggg      2580
     accgtggggt ggattgggac ctcttcagat cgcgtatcca cgagcgaatg gggagtctgg      2640
     acctcgagga acctgtggct gccctttgcg aaaaatttac cggggttata actcgcacag      2700
     ctgaagaatg cttaggatca ctgaaagcag atagaactga caggggttat gagtggtgga      2760
     ccccagtact cgataagctt agggtagccc agggtagggc caggcgtcga tggcaaaagg      2820
     cccgccgaac ggggggtgag gaagaggagc agtctgggag agtcttccgc gaccgcaggc      2880
     gcgagtatcg aagagcgatg catgacgctg agaccgcctt ttaccgggag atcgctgaag      2940
     ggggaaaccg tgacccgtgg ggactagcgt atcggacggc gagtggtagg cgacgcgcac      3000
     caactaatgt ggttaacggg gtggagtatg cggggcggtg ctcggatgat gtgagtgggg      3060
     ccatgcgcac cttgatgtgg gcgctgtgtc cggatgacta tatgtctcgg gacactccgt      3120
     accatgcgcg ggtgcgtatc atggccgcgc tccccccatc cgggcgggac gcagacccgc      3180
     tgagcaaaga ctcccttcgt gccataattg gctcactgaa gaataccgca ccgggcatcg      3240
     acggtttaac ggcgcgcatt atcaaaaagg cacttccggc tgctgaggcc gagttcgtgg      3300
     ccgtatacgc acggtgcgtt gtggagggga ccttcccgcc ggtgtggaag gatggccgcc      3360
     tacttgttct gccaaagggg aatggcaggc ccttaacgga ccctaaggcg tatcgcccgg      3420
     tcaccttgct gccggtcctg ggaaagatct tggagaaggt attattgcag tgtgctcctg      3480
     gcctcaccca tagtattagt ccgcgccagc acgggttctc tcctggacgc tcaacggtga      3540
     cggcgctgcg aactctgctg gacgtgtcgc gcgcctcgga gcagaggtac gtaatggcca      3600
     tattcttgga catcagtgga gctttcgata acgcgtggtg gcccatgata atggtgaagg      3660
     ccaagcggaa ctgtccgccc aacatctatc ggatgctgac ggactatttc cgcggacgcc      3720
     gtattgccgt tgtcgcgggg gaatgtgcgg aatggaaggt gtccacgatg ggctgtccgc      3780
     agggctcagt gctcgggccg acgctctgga acgttctgat ggatgacctg ctcgccttgc      3840
     cgcaggggat agagggaaca gagatggtcg cctatgccga tgacgtgacg gtactggtta      3900
     ggggtgactc acgggcgcag cttgagagga gagcgcacgc cgtgctagga ctcgcagagg      3960
     ggtgggcgag caggaataag ctcgattttg ccccggcgaa gtcccgatgc ataatgctga      4020
     ggggaaagtt tcagcgtccc cctatagtcc ggtacggcag tcatgtcatt cggttcgaga      4080
     accaggtgac ggtgttgggc gtctcttcga cgattgcctc tctttcgcgg catgcggcgg      4140
     ccattggcga gagggcgagc aggtgcttcg gcaagatgtc tagagtttcg gcttcggctt      4200
     gggggctgcg atatagggct ttgcgtgtct tgtacatggg cacttatgtt acaaccctta      4260
     cctatgcggc ggccgtatgg tatttgcggg ctgctgtgca cgtcgtgcgc agcgtgctgc      4320
     ttaggacgca gcgcccgtcg ttgacgctgc taacgaaggc ctaccgttcg tgcagcacgg      4380
     ctgctttgcc ggtgttggcg ggcgtcctgc cggcggacct ggaggtgact cgtgctggac      4440
     ggaggatgcg ggagtgcgaa ggattggcgc gggagttggc ggcggagaga cgacgacgga      4500
     tcgacggcga tgtcttggta gtttggcaga acaggtgggt gtctgagggt aaggggaggg      4560
     aactgtacaa gttctttccc gatgttgcgg acaggaagaa ggcaacgtgg atggagccgg      4620
     actatcagac ctcgcagatc ctcacgggtc atgggatctt taataagcgg ttggcggata      4680
     tgcgactgag ggaggggcat gcttgcgact gcggggcggt tgaggaggat agggaccatg      4740
     tcctgtggga gtgtcctctc tatgacgaaa tccggggcag gatgctcgat ggaatctcgc      4800
     ggtctgaggt gggcccagtt taccacgcgg acctggtcag ggacgagaaa aattttcggc      4860
     tcttgcgcga gttcgcgata catggcacac ggcgcgcact gcgcgcgaat cacgaggact      4920
     gcctggcgac gaagaatgtg ggtgatgtta gcagccccag aacggggaga atgctagtgg      4980
     agtgaagggg acggtgttag tttgtagaac cgatcggtac cttggtgccg tgaagttcat      5040
     gcttcggtcc taataaccgc aaggttggtg ggaccatggg aggtggtggg aa              5092
//
ID   R1-10_BTa   repbase;    DNA;    INV; 6436 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-10_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6436
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 950-950 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           539..3037
FT                 /product="R1-10_BTa_1p"
FT                 /translation="MRKCLRHNRIHCKTCKCLLHTTTDCGSKGCFDRKLYL
FT                 YRQETMSSNLTKKGSTESSDSSLQPTPTTSNNKETSAVASDAATITTPSNV
FT                 ILIPPLPPPLPPPTITNNPLSVPNDFEDLSQDIIRTSTPTKTPNQRENPAP
FT                 SDNEYLSVQYQKLSDLQLELELKKFKAELEEKESLFTAISTEIQEKRKHQT
FT                 TLQSQIRDTNIETNDYPEIDNTIKKINEEVNLLQKERANINTNRNDIKGLI
FT                 ISLETEFENRISHNKMNDINVDPNITLTPSNIISMEGITEESIKRRRTETK
FT                 SDDLDTSFSDTEYEREKREKRNRTDNDNKKSNLRAARKKEPLIPKNPSISG
FT                 QSQITSFLKSEKDKPPEQLTGQPDEQDDNVKKYNIFTSNPKQKKTKNQKNC
FT                 DSPPSSSKDTKTNPPQIKQNVPKGNKTTDAETTGKAIEDPQFMTDFLKNNP
FT                 LPQEFSTNSMLYLFNFFQTFMLHVNSKQSESILGKKCEELEEKNQKLENTL
FT                 KDKEKEIKELRTKLENCKSKLPLKPSNPWFNNEFPALKQSRRVTREITSKR
FT                 LTDTIISKDPDVVEYQFSSPDGELIEEKVYDEFCENELNDLPEGSMITWNT
FT                 ISKDKKKIQLKCRTNNKEALNKIIISKFKRALDAEPDVKKRSEVLKLGPVP
FT                 ASMSDTQILNKIKEELRVNIKDDDITIFRKTNLRTLPGKMAIYMRVHSPIL
FT                 EKLVELKEIYLSTFSGRATIEPIIMVTPCLICLDVNHSTKQCVRNKDDPLC
FT                 LNCGQPKHKISDCKNKKKCINCARKNISQNTDHLPSSPICPIFKEAWNKGF
FT                 NRCEREAGELYLKNLCNKILPNFEPNQETPI"
FT   CDS           3037..6231
FT                 /product="R1-10_BTa_2p"
FT                 /translation="MKSHSLPNNKFQILSSEQNDVNNPDLHSNLIDVSYNT
FT                 PNKPTSGSKPTSVSNCTNEQSKNNITFTALLCNLDGRPTSHNIMKQIASDE
FT                 NAGLILLTEPNEKISNWEGHLVNHNKNVAIYSNRNQIGNIREHNIGNNILS
FT                 VEWENLVIVTCYFSPNENKRNFQIALLELDILLKNINKPYIVTGDFNARSM
FT                 KWGDIKTETRGRVFEEFIEGNNLIIHNDCTKFVPTFCDEQGESVVDLVLSS
FT                 PDIAQDIDIEVLEDVVADHKCIKLVFNKKVIQEPSGVRPGGWYINPKKFSD
FT                 LAKLTKLKVNGAASKLSPELCEKILTEALDELFVRKDSAERKKPMYWWTEE
FT                 IGALRKVCMNMRRKLQRHREEIRKSRNANLTLKFNSDTLKDYKEAKHNLIR
FT                 AIAESKGSIWKKMIRNLEDDMWGAAYKIVKRRIKNPKRFDETSMSNSEILE
FT                 TVEKLFPNHGPTIWTPEIQNLDSSIDEITPITETELRQALSKIKINKAPGT
FT                 DYFLPIITKIFVDSNFHGFLDMLNGLMKDKIFPKEWKEARLALIPKGNKRK
FT                 KAYRPICILSTFSKIYEHIINNRLQTQIDLSESQFGFRKGRSTIHAINKIR
FT                 ELYEKNRKLGIKKRLMVAVGLDVKNAFNSLRYSDVIIALREQGVELYLIEL
FT                 MKDYLNERFLICGNLRVPVYSGCPQGGILSPLLWNLVYEHVIRNRESPNVE
FT                 KIAYADDLLVIFFTVNARTLKIDTEYVSNNIKNRLEEKSLELECSKSEGIV
FT                 ISSKKKDQIAEIVIGGEIIETKKNMRYLGIQLSKNLSMTKHLETVCERASK
FT                 VGFGFRSLLPNLHGPSFQKRKLLINAIMSIIFYAVSVWQSAIDLESNVALL
FT                 TKTLRPFRRSLVSGYVTCSNTGLEILSGILPAKLLVEERVRKFRNEDPNVY
FT                 KASLVDRWESSWFNAENRDNWMKKLITRDTFKDFIFRQHGQLNFYLTQFFT
FT                 GHGSFGSYLHRFHLRESPDCPFCGAVDTPEHTFFICSKFEKERFDAEAYLK
FT                 QSLNRENIVEIMLDNKDKWIIIDKMITAILKIKNSEFNRPKPTSTDEMPEG
FT                 GSGVSAKG"
XX
SQ   Sequence 6436 BP; 2334 A; 1331 C; 1140 G; 1628 T; 3 other;
     cttagggacg gaaaacagtg tttctccaag tgcagtgaag tgggtagaag tgttgcgcaa        60
     catcaaaatt gccaactcta cccactcact cgccggattt ttcaattttg cgcatgcgca       120
     ctttgaggga gaatgggcaa cactggaaga gtctcaatct gaacatctga tgatataaag       180
     agatatagaa gtcctcactg cgcatgactc tacgatgaca ccactacaaa gaagacacct       240
     actatcattt actcgatcaa aatgaagtaa attgataact ggaccgtttg tttactggtg       300
     attactccag gacttacgcc cgcttcgctg tccgtcgaat ctattgctac ctacaactac       360
     ccaagcccgc cgcccgccgc cgccgccgtg ccgcgccgcg ccgcgcgccg tgtcgtctca       420
     ccacgccccg ccgcacctct tgctgtgcgt cgcgccgcgc gccgctgcat gccgctgggt       480
     cccactgtgc tggtcttcta gttcgtcccc gcaacttata cctacctgaa ttctcttcat       540
     gaggaaatgc ttgcgtcata accgtattca ctgtaaaacc tgtaaatgct tattacatac       600
     aactacagac tgcggatcaa agggctgttt tgataggaag ctttatctct atcgccaaga       660
     aacgatgtcc tcgaatttga caaaaaaggg ctctacagaa tcttctgatt ctagccttca       720
     acctacccca acaacaagca ataataagga aacttctgcc gttgcatccg acgctgctac       780
     aataacaaca ccctccaatg tcatacttat tccaccatta cctccacctt taccgcctcc       840
     tacaatcact aacaatccct tatcagtacc taatgatttt gaagatcttt cacaagatat       900
     tatcagaaca tctaccccca caaaaacacc caatcaaaga gaaaacccgg caccctctga       960
     taatgaatac ctgtctgttc aatatcaaaa attatcagat ctacaactag aactagagct      1020
     caagaaattc aaggcagaat tagaagagaa ggaatctctt ttcacggcaa tctccacgga      1080
     aatccaagag aaaagaaagc accaaactac tcttcaatct caaatcagag acacaaacat      1140
     cgaaacaaat gactaccctg aaatcgacaa caccatcaag aaaattaatg aagaagtcaa      1200
     tttgttacaa aaagaaagag caaacatcaa cacaaataga aacgacatta aagggctaat      1260
     tatctctttg gagaccgaat ttgagaatag aattagccac aacaagatga acgacataaa      1320
     tgtagatcct aacatcacct tgaccccctc caacataatc tctatggagg gaatcacaga      1380
     ggaaagtatt aagagaaggc gtacagaaac taaatccgat gatcttgata cttcttttag      1440
     tgacacggag tacgagaggg aaaaaaggga aaaaagaaac agaaccgata atgataataa      1500
     aaagtcaaat cttagagccg ccagaaaaaa agaaccttta atcccaaaga acccctctat      1560
     ttctggacaa tcgcagataa ccagtttcct taaatctgag aaggataaac ccccagagca      1620
     actaactgga caacccgatg aacaagatga caatgtcaaa aagtacaata tctttacctc      1680
     aaatccaaaa caaaagaaaa ccaagaacca aaagaattgt gactcacctc cttcgtcatc      1740
     aaaagatact aaaaccaacc ctccccagat aaagcaaaac gtacccaaag gaaacaagac      1800
     aactgacgca gaaacaaccg gaaaagccat tgaagatcca caattcatga ccgactttct      1860
     aaagaacaat ccacttcctc aagaattctc gacaaactct atgctgtacc tttttaactt      1920
     ctttcaaacc tttatgcttc atgttaattc taagcaatca gaatcaatat taggcaaaaa      1980
     atgtgaggaa ttagaagaaa agaaccaaaa actcgagaac accttaaaag ataaagagaa      2040
     agaaattaag gagctaagaa caaaattaga aaattgtaag tcaaaattgc ccttgaaacc      2100
     ctccaaccca tggtttaaca atgaattccc tgccctaaaa caatcacgtc gagtaaccag      2160
     agaaattacc agcaaaagac tcaccgatac tataatatct aaagatccag acgttgtaga      2220
     atatcaattt agctctccag atggtgaatt aattgaggaa aaagtatatg acgaattctg      2280
     tgaaaatgaa cttaatgatc tccctgaagg ttccatgatc acttggaaca caatctctaa      2340
     agataaaaag aaaattcaac tcaaatgcag aaccaataat aaagaagcac ttaacaagat      2400
     tataatttcc aaatttaaga gagctttaga tgctgaacca gacgtcaaaa aaaggtctga      2460
     agttcttaaa ttaggccccg tccctgccag tatgagtgat acacagatcc taaataaaat      2520
     taaagaagaa ctaagagtga atatcaagga cgatgacatc accattttta ggaaaacaaa      2580
     cttaagaaca ctaccaggaa aaatggccat atatatgaga gtccactccc ctattctgga      2640
     aaaattagtc gaactcaaag aaatttactt aagcaccttt agtggcagag ccacaattga      2700
     accaattatt atggtaactc cctgcctcat ttgtttagat gtcaatcatt caaccaaaca      2760
     gtgtgtaaga aacaaagatg atcctctctg cctcaactgt ggtcaaccta aacacaaaat      2820
     ctctgattgc aaaaacaaaa agaaatgtat taattgtgct agaaagaata tcagtcaaaa      2880
     tacggaccac ctcccctcaa gtcctatatg cccaattttt aaagaagcat ggaataaagg      2940
     atttaataga tgtgagagag aagcaggaga actctatctt aagaaccttt gcaacaaaat      3000
     actccctaat tttgagccaa accaagaaac acctatatga aatcacactc actacctaat      3060
     aataaattcc agatactgtc atctgaacag aatgatgtaa ataatcctga tttacattcc      3120
     aatctgatag atgtttcgta taacacccca aacaaaccta catccggttc taaacctact      3180
     tccgtttcta attgcactaa tgaacaatct aaaaataaca tcaccttcac tgcactacta      3240
     tgtaatcttg atggaagacc aacatcccat aatattatga aacaaatagc atccgacgaa      3300
     aatgcaggcc ttattctctt aactgaaccc aacgaaaaaa tctccaactg ggaaggtcac      3360
     ttagtgaatc acaataaaaa tgtagctatc tattcgaaca gaaatcagat tggaaatatc      3420
     agggaacata atataggtaa taatatttta agtgtagaat gggaaaacct agttattgtc      3480
     acatgttact tctcacctaa tgagaacaaa cgcaattttc aaatagcttt gttagaatta      3540
     gacatactcc ttaagaatat aaataaacct tatattgtaa cgggggactt taatgcacgc      3600
     tccatgaaat ggggggatat taagactgag acaaggggaa gagtttttga agagtttatt      3660
     gaaggcaata acctaatcat tcataatgac tgtacaaaat ttgtcccaac attctgtgat      3720
     gaacagggtg aatcagtcgt agatttggtc ctttcttcgc ccgacattgc ccaagatatc      3780
     gacattgaag tattggaaga cgtagtggct gaccataaat gtattaaatt agtctttaat      3840
     aagaaagtaa tccaagaacc ctcaggagtc agacccgggg gctggtacat caatcccaaa      3900
     aaattctctg acttagccaa attaactaaa ctaaaagtaa atggagcggc atctaaactc      3960
     tccccggaac tttgtgagaa aattttgact gaagcactgg acgagctttt cgtgagaaaa      4020
     gactccgcag aaaggaaaaa gccgatgtat tggtggaccg aggagatcgg cgccctgaga      4080
     aaagtatgta tgaatatgag aagaaaactc caaaggcata gagaggaaat taggaaaagt      4140
     cgtaacgcta atcttacctt aaaatttaac tctgatactc taaaagatta taaagaagca      4200
     aaacataatc tcataagagc aattgctgaa tctaaaggat caatatggaa aaagatgatc      4260
     cggaatcttg aggatgatat gtggggagct gcgtataaaa tagtcaagcg aagaatcaaa      4320
     aaccctaaaa gatttgacga aacatccatg tcaaacagcg agattttaga aacagtggaa      4380
     aaactatttc ctaaccacgg gcccactata tggacaccag aaatacaaaa cttggactca      4440
     tcaatcgatg aaattacccc cattaccgaa acagaactta gacaagccct cagcaaaatt      4500
     aaaattaata aagctcctgg cactgattac tttttaccta tcataaccaa aatttttgta      4560
     gactccaatt ttcatggttt cctcgatatg ctcaatggac tgatgaaaga taaaatattt      4620
     ccgaaagagt ggaaggaggc acgtctggct ttgatcccta agggcaataa aaggaagaag      4680
     gcatatagac cgatctgtat cctcagtact tttagtaaaa tatatgaaca catcattaat      4740
     aacagactac aaacgcaaat cgacctctcc gaaagccaat ttggctttcg gaaaggaaga      4800
     tccacaattc atgccattaa taaaattaga gaattatatg agaagaatag gaaacttgga      4860
     attaaaaaga gactgatggt ggcggtcggt ctagatgtca agaacgcatt taattcccta      4920
     agatactctg atgtcatcat tgcccttagg gagcaagggg ttgaacttta tctgattgaa      4980
     ctgatgaaag actatttgaa tgaaagattt ttgatttgtg gtaatctcag ggtgcccgtc      5040
     tattcggggt gtccccaggg cgggatactt tcgccactgc tttggaactt ggtatatgaa      5100
     catgtaatac gaaacaggga atctcctaat gttgagaaga ttgcgtatgc tgatgatttg      5160
     ttggttatat tcttcactgt aaatgctaga acgcttaaaa ttgacacgga atatgtctcg      5220
     aacaacatca aaaatagact agaagaaaaa tccctggaac tagaatgttc caaatcagag      5280
     ggcatagtca tctctagtaa aaagaaagat caaatagcag aaattgtaat aggaggagaa      5340
     ataattgaga caaaaaagaa tatgagatat ttaggtattc aacttagtaa aaatttatct      5400
     atgaccaaac acttggaaac tgtatgtgag cgggcctcta aggttggctt cggttttagg      5460
     agtctcctac caaatcttca tggaccatca tttcagaaaa gaaaattatt gataaacgcc      5520
     atcatgtcca taatctttta cgcggtctca gtctggcaat ccgcgataga ccttgaatct      5580
     aacgtcgcat tactaacaaa aaccttaaga ccattcagga gatcccttgt ttcgggatat      5640
     gttacttgtt ctaataccgg tctggagatt ctctctggaa ttctgccagc taaactatta      5700
     gtagaagaga gagttaggaa attcaggaat gaggatccca atgtctataa agcctcactt      5760
     gtcgacagat gggaatcgtc ctggtttaat gcagagaata gagataattg gatgaagaaa      5820
     ttaattacta gagatacttt taaagatttt attttcaggc aacacgggca acttaacttc      5880
     tatctgaccc aattttttac ggggcatggc tcttttggaa gctatctcca taggttccat      5940
     ctgagggagt ctccggactg tccgttctgc ggggcggttg acacaccgga acacaccttt      6000
     tttatttgct ctaaatttga gaaagaaaga ttcgatgcag aggcttacct gaaacaaagt      6060
     ttaaatagag agaatatagt cgagatcatg cttgataaca aagataagtg gattataata      6120
     gataaaatga ttacagctat cttaaaaatc aaaaactcag aatttaacag acccaaaccc      6180
     acttccaccg atgaaatgcc agagggcggt tccggtgtgt cagcaaaagg ctgacaacaa      6240
     gtttccgacc tgccgtccag tgttcactta ttataagtca attttaaatt tgatcatttc      6300
     ttctcaaaag acaccttttt atwctttatt tgttcttcat attttgtcca tttactcttt      6360
     aagatattca ctaatcgaga awtggaaatg aactgtacca acttgtaata gaacttgtca      6420
     aawaaaaaaa aaaaaa                                                      6436
//
ID   R1-10_DTa   repbase;    DNA;    INV; 4866 BP.
XX
AC   .
XX
DT   25-JUL-2021 (Rel. 26.10, Created)
DT   01-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4866
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5908-5908 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 4866 BP; 1566 A; 1093 C; 1211 G; 951 T; 45 other;
     cgacagagta cttgctaagg tgagaaggcg gtttttaaat cccgttcgcg tctgttcccg        60
     aggagggcgs cgtttgggtt agcgtctgtc ccagattggg cggctattgt cacaattgcc       120
     ttttttcaga tcsgcagaca ctaaagaagg tctcmcgctg atgacaacgg cattccaaca       180
     cctcagtacc cagattgaaa ccctggctaa atggctgctg ggctaatgct gaagttaccc       240
     ccgtcctctt aaaacttggc gagtctttaa atacgttcaa accacatcat cgcggaaccg       300
     atggtacagg tgcagttgag agaactcctg cttagcatcc gccctggctc tgaacgcagg       360
     tacccataag gacctacgtc aaccctcgca tgaacctcac tgcttgcata ggacccatgg       420
     gggcatcagg gacgactgta catatgtgag gagatagcga cttaaagttt ggacccatat       480
     agcatgcaga acagtaataa aacccaagaa gaagagcgag aagttttcca gaagagtaaa       540
     aaaatggcga ggtcgccaga tcaaggcgtt accaaacgaa ggaaatacag cgaaagtggt       600
     taatcccgag gaaccaaacc gaactacggc aatacagaac gaggatcagc aaacccctgc       660
     cccatcccaa gatgttagac cgacgacagg ctccccaaga ctagagctta tctataagat       720
     gagagcctta gaagaggaaa cgatcgagaa gtgcagatca gtgcttcgaa aaatgaagta       780
     tgcgatgtta aggcagcgaa acatcagtat ggatgttaaa gacggaacgt cagaactgag       840
     tgaactcctg gatgttgtcg ggaattacag gaaaagctgg ctgactgccg aaacagagag       900
     ggtcgagata gagaaagcgg cagctgaagc caaccaaagg ctagaggaaa ccgacacacc       960
     agtttcgtct cgcaaaaagc ggactgcctc tagcccggtc gagcaagagg cttctaaaaa      1020
     acccaagaat aaagaagcca aggacggctt taaaacagtt actcggaaga agggaaaccc      1080
     aaaaaatcac aaacagaggg aacgaatgag acggtcacgg ttaacccagg aagaagagat      1140
     aaccccaaaa tacgtatcag atcccgacca gatgctgtag tggtcaagcc cgcggaaggc      1200
     acgagttatg ccgaggtgct aagggagctt aggaaaaact tgaagcctga cgagactgat      1260
     atagccatcc gctcagtcag gaaaaccaag tcagggattt gctactagag ttatcaaaag      1320
     gagaggccga gttgcatgcg ggcaggccag cgaggacgca cggtaggcaa atcaggcgag      1380
     atgcgagacc tagacagtct gacaaacgag gaggaggtca taactgcaat aaaggctata      1440
     ataggcgagc agagtcagga agtcaaagtg agactaactg gcgtaaacaa tttggagcaa      1500
     aaacgtgcgt tcgttatact gccaacagaa gaagcagcta aaattctcaa ggagccaaga      1560
     atcaagattg gatggacacg atgccgagtg aaacggtgca tcgaagttac acgatgcttt      1620
     agatgctttg gagtagacca catacaaagg gattgctcgg gaccagacag gagaggtctg      1680
     tgtattaggt gtggagagcc ggggcacaag atgagaagtt gctcgaagac gccgaagtgt      1740
     tgcctgtgtg cgcaggctgc gcagccaata cccgcaaggc acaaatatga aaattctaca      1800
     agcaaacctt cactgaagcc gtatagcaga tgacctgctg tcccaaatag tactagaaca      1860
     gcacgcggat ttggttataa tttgagagca atatagagtg aaacgccgag taatctggct      1920
     ggaaaacgac gataagctat atggatccca gctgcgggtg acatacgatg tctcggtgac      1980
     ggcagaggta gctgttacgt gtatgtacaa cttgaggaat tcaccatatt tagctgttat      2040
     ccaaccccta acgatacaat agaagctttc caacagaaaa tcaatgacat tgaagacata      2100
     gctcagcaaa tgcagggaag ccttatagta gctggcgact ttaactctag agcagaagac      2160
     tggggcatgc gaacaaccaa caccaccgct aacgtgggca taactccgac gtttcagcga      2220
     atgggtcaaa tgagcacaat accggatata acgctagtat cagagaactt tgcgcacaga      2280
     atactagact ggaaagtcct agacatttac aatggaagcg accacgaaaa catatcattc      2340
     agtactgaaa gaagcactgt tcagcatgta gggaatcaat cacgaacttg tcaccgatag      2400
     aatgttaacc gactaaacaa gaccctctta atacgagaaa ttgaccggat caaaactgaa      2460
     agcaatgaga gagctagcgt ggagagcgtt gttagcagca ctatgtccac cataaaaagg      2520
     gcttgttatg ctgctatgcc aaagtctgga aatccccaca gacgaggagc agaggtatac      2580
     tggtggacgg aggagataaa tgatttccgc ttctcctaac tttcgctgta ggcgtcatct      2640
     cacacgagct aggagaagcg gaagtttcac tacacaggag aaggagtaca agaaggcaaa      2700
     aaagcttctt aacattgcca ttcgcataag taaacgagat aaatggaaat ccctctgaaa      2760
     cgttaacaag gtcccattat gaagaagctt aggtcaagaa gtactcagcc agatatagat      2820
     gaaggactat ggataacatt gtcaaaactc ttttccccct ccatccgatc agaccagctt      2880
     acacagcacc gcagccgcac gagcagcact ttgaattgtt ctccgaggat gaactaacta      2940
     aggcaagacg cagcatgaag aataggaaag caccaggacc cgacaatata ccaaccgaag      3000
     ttcatcgaag agagcagacc tgatgtacta ttaaatatgt ataacaagtg cctgcagaat      3060
     ggaatattcc ccgatccgtg gaagatacag aagctggtct tgataagcaa aggaaaagga      3120
     gacccgaaaa ccccatcagc ttatcgaccg ctctgcatgc ttaacacgac tggaaagcta      3180
     ctggaaaagc tgatcaagct ccgactagct tctgctgtcg aagtacccgg tggcctctct      3240
     cgcagacaac acggtttccg accaggaagt cgtaaatgca gcactggcaa gtsaagkggg      3300
     caaccatgca ascagaccca tagtgctttt ggcgacacta gacgtcaaaa acgcgtttaa      3360
     tagtgtcagg tggtcggaca tgatcgattc gctaaacaga cgcttccata tcccagaata      3420
     tctgatgcgg ctaatagaca gctatcttaa gaaccgaaaa ctgatttatc agacaagagg      3480
     aggcgaaaaa cagatagaca tcacctcggg agcagcccaa ggttccatac tgggaccgga      3540
     actgtkkaac atcagttacg acgatatcct cagaacagaa atgcccgacg acacattcct      3600
     cgtaggctat gcggatgacc tagtcgcagt tatcccagma cgcaatactg agcacgcccg      3660
     acggacacta aaccaagtta tgattcgtgt aaacgcgtgg atgaactctc gtggcttaca      3720
     gctggcttcc gaaaaaackg agctactgct agtcacmaga aagcagatgc cactagagat      3780
     agaattaagg ctcaccgaga caactawtcg gacacagaag wcaataaagt acctcgggkt      3840
     caggctggac tcaagamtga cctttgggcc acaaattgaw tacgctagag ccaaggctgc      3900
     agagacagca aggcatctta gcggacttat ggcaaacatc ggkgggccaa taccatccag      3960
     acgaaagttg ttaatgaaca attcttctgt atggatgtga agtgtgggct gacwcgctaa      4020
     aaacaaattg magactaaaa actttgatgg ctatacaaag aacctctgcc ttacgcataa      4080
     taagcgcata tcgcacggtk tcgkgtccag cagcctctac gatctccgac magcaggagc      4140
     wtctaagcaa tcgatwttgg acmtaaaaag agaaaccctc aagacctggc aagaaagatg      4200
     ggaacgcgaa gktactggaa gatggacaag aagacttatc cccgacctta aaagctgggt      4260
     ggatagacga cacggtgatg wagactacta cgttacccaa gtgctcacag gccacggtta      4320
     cttcagttcc ttccttaaca agatggscaa aagcacgsaa gccagctgtw tatacgctga      4380
     tgctgaagcc gacaacgcag aacatacaat gttttattgt acgaaattck cgcaggmacg      4440
     aaatagtctw acacgagtga tcggacagat tacgccggaw acaatagtcg ccaagatgtg      4500
     cgaaagcgaa gagaactgga gggcagcagc tgcttttatc ggagacattc tgcgmtcgaa      4560
     gaaaagggac sttgatgmaa ggatataaaa agggcagtct ggacgcagac atsagacgkg      4620
     ctctggkgat cgcctctcct tgggtgccaa tggatatcwa ctgtggtaga gacgagcctt      4680
     agagctttgt atgagtagat gaacgcgcac tgckcgcmag agkccccact ttgaagtaat      4740
     gcgaaagctt ttccgaagtg gatacaggcc tgatgaggas gggtttttag tgggtgcaag      4800
     ccccacatac cacggtagtg tgagatgcag aagtcatttt cccccccagc ccaaacaaaa      4860
     aaaaaa                                                                 4866
//
ID   R1-10_DWi   repbase;    DNA;    INV; 4784 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-10_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4784
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1971-1971 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >97% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           297..1574
FT                 /product="R1-10_DWi_1p"
FT                 /translation="MPLQRTPPPPGQGAVQQVAPSLVAQNAALTVETCQDA
FT                 TPKRSRDSTAYSPNSGGNVPPKKSKVQPKVKALDEMSILLDSIAVHYSKEK
FT                 DASGKINRSITNTFREKVARLQELVVVARCHERSGPTQVSPRVRDNKEVRK
FT                 KSAQQPADKREEQPHDPAQKDNNTWQRVGASSRAARQKSGIPRRVKPEALL
FT                 VQPASGCSYSEVLAMVTRRSDDKLKRVSEQVIKVRRTVKDGLLLELKGAPE
FT                 DKQLLKDELKHVLGESAGVRVLAPIKHAIIRELDELTEPCDLIAALANQAS
FT                 VDEDCCTVRSLRRGLSGSKVAVISAAETVMRKLLALGRVRVGWSCCRIKEL
FT                 DELPKRCYRCLRAGHISAKCPSQVDRSNCCLRCGVEGRKAASCGVKDPICF
FT                 LCQEEGRQPTNHFAGSHRCPLNGTKRQPRAHQ"
FT   CDS           1574..4564
FT                 /product="R1-10_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMRLNFIQVNLNHCAVAQDLLHQTVREGGYDLALVSE
FT                 PYRSERNADWVSDINGKAAIWSCGTSNLPIEEVAQMEGFVRAKIGGYWVYS
FT                 CYLPPSYTLERFGCIIDAISVDARGRQGVIIGGDFNAWAIEWGSTRSDARG
FT                 RLLLECFCNLSVSLLNSGTRNTFSRAGAGSIVDLTFASDSLAPQSNWEVGR
FT                 HYTGSDHEAIVFTVGTTRQRAERTCPIGKSYKLESLNLHTFSSVLENLRDV
FT                 RLGDADAAANSIMSTLESACDASMSQRKAYRRHHKPVCWWNDSIADVRRRC
FT                 FXARRMYQRARGTLAFSDLHLDYKRCCKALKKAIKDSKRECFLALCDSAEQ
FT                 DPWGKAYQTVVKRLHIDKTPAPKDAQTVRGIVDTLFPQIVDELPVLHPPLH
FT                 PHIEECTVDEVLDIVRKLKPAKAPGPDGIPNHILKIAVSLQAESFVDLYNS
FT                 CLREGAFPSRWKKQNLVLLTKPGKTSLEASSFRPICLLDTAGKVLESLICA
FT                 RLSSAIQANGGLSEQQFGFRKAKSTTDAIARVVNIAADAIAGVRWKGGSKE
FT                 YCLVTTLDIRNAFNSARWSRILVALADFGVPRYLLSCVRQYFQGRTICYTT
FT                 NDGPVVRTVSGGVPQGSVLGPLLWNTMYDGVLRLKFPPGTHITGFADDIVL
FT                 AVVAKTVKEVEERSNAAIKSVEQWLQAAGLQLAAHKTESVLISSRKAVETA
FT                 KVQVGSAVIESKRAIKYLGVLLDTRLSFREHLQHAGEKAAKSAHALSRILL
FT                 NTRGPRQGRRLLLSTVTTSTALYAAPAWIDGMKVKSYRRGLEATHRLSAIR
FT                 VCSAFRTVSDEAALVIAGMMPIDEQAAIIEAVAKARRGGSSDGPGATRSLA
FT                 RQQSMRRWQERWDTSTKGRWTHKLIPDISAWVLRKHGEVNHYLTQLLSGHG
FT                 CFRTYLRRFGHETSDECTWCGSGIPEDAEHILLHCPRFEAARFSLECAMGH
FT                 RATLENLTRLMVADPRAWDAVSTFASVVMKELRRLERQRHEE"
XX
SQ   Sequence 4784 BP; 1218 A; 1244 C; 1315 G; 1003 T; 4 other;
     tataattaaa taatttcata ttctctatts aatttgttgt cacctatawt tgagtttccc        60
     cccactatac atatacatat atatattttt gcttgctgtt gacggcaccg gcaggtcaag       120
     gctcaaatcc gctggaagca tctggagatt aaattttctt ttttccttcg ttgcttgttt       180
     tttttttcct ttatttattt tttttataaa taaataaaga cctagtaaga agtttccgag       240
     tcggagcggc ataactccca tcgctaggca gggggaaata cttgcccgcc gagggaatgc       300
     cattacagcg cacgcctccg ccaccagggc aaggggcagt acaacaggtt gccccaagtc       360
     tcgtggctca aaatgcggca ctgacggtgg agacttgtca agatgcgacc ccaaagcgat       420
     ctagagactc cacagcgtat agccctaata gcggcggtaa cgtaccccca aaaaaatcga       480
     aggtacagcc aaaggtcaag gcgctggatg aaatgagcat cctcctggac tcaattgctg       540
     tccattactc taaggagaaa gatgctagcg gcaaaataaa ccgcagcatc acaaatactt       600
     ttagggaaaa ggtcgccaga ctgcaagaat tagtcgtggt cgcccgctgc cacgagcgaa       660
     gtgggccgac gcaagtgtca cccagagtaa gggacaacaa agaggtgagg aagaagtcng       720
     cacagcagcc tgcggacaaa cgagaggagc aaccccacga ccctgcccag aaggacaaca       780
     atacgtggca gcgggtcggt gcgtcatcgc gggcggcccg tcaaaaatct gggatacctc       840
     gcagagtcaa gccggaagct ctcttggtcc agccagcatc gggttgtagc tacagcgagg       900
     tcttggccat ggtaacgagg cgcagcgatg ataagctcaa acgcgtaagc gagcaagtca       960
     tcaaggtacg gcgtaccgtc aaagacgggt tgctactcga gctaaagggg gcccctgagg      1020
     acaagcagtt gctgaaggac gagctgaagc acgttctagg ggagtcagcc ggagtacggg      1080
     tccttgctcc aatcaaacac gcaattatcc gcgaactgga cgaactgacc gagccatgcg      1140
     accttattgc tgcattggca aatcaagcaa gtgttgacga ggactgctgc accgtcagga      1200
     gtctacgccg cgggctctcc gggtccaaag tcgcagtcat cagtgcagct gagacggtga      1260
     tgaggaagct actggcatta ggcagagtcc gtgttggttg gtcctgttgc cgcataaagg      1320
     agctggacga gctgcctaag cgttgctacc gctgcctcag ggctgggcat atatcagcga      1380
     agtgccccag ccaagtggat aggtccaact gctgccttag gtgtggagtg gaaggacgta      1440
     aagccgcgag ctgtggagta aaagacccca tctgcttcct atgccaagaa gagggccgtc      1500
     agcctacaaa ccattttgcg ggcagtcatc ggtgccccct taatggaaca aagaggcaac      1560
     cacgggccca tcaatgatgc gcctaaattt catacaagtg aaccttaacc attgtgccgt      1620
     cgcgcaggat ctgctccatc agacggttcg ggaaggcgga tacgacttgg ccctagtcag      1680
     tgagccgtat agatcggaga ggaacgccga ctgggtatcc gacatcaacg ggaaggctgc      1740
     tatttggtcc tgtgggacta gtaatcttcc aattgaggaa gtcgcccaga tggagggctt      1800
     cgtccgggcc aaaattggag ggtactgggt ctacagttgc tacctgcctc ccagctacac      1860
     cctggagagg ttcggatgta tcatcgacgc catttctgtc gacgctaggg gccgccaagg      1920
     tgtcatcatt gggggcgatt ttaatgcctg ggcaattgaa tggggcagca ctcgctccga      1980
     cgcacggggc cgtctcttgc tcgagtgttt ctgcaacctc agtgtctcgc tgctcaactc      2040
     cggcacaaga aacactttca gtagagccgg tgcaggatcc attgtagacc ttacgttcgc      2100
     cagtgactct ttagcgcctc agtcgaattg ggaagttggg cgtcactaca ccggtagcga      2160
     ccacgaggcc attgtcttca ccgttgggac aaccaggcaa cgagctgaac gaacgtgtcc      2220
     catcgggaaa agctacaagc ttgagtccct aaacttgcac acgttcagca gcgtgttgga      2280
     gaatctacgc gatgtacgcc taggagatgc agacgcggca gccaactcta tcatgtcgac      2340
     actcgagagt gcctgtgatg cgagtatgtc ccagcgcaag gcatacagaa gacaccacaa      2400
     accagtctgt tggtggaatg acagcatcgc cgacgttcgc cgcagatgct tccncgcgag      2460
     gcgcatgtac cagcgtgcta gagggacgct agccttctca gacttgcatc tggactacaa      2520
     gcggtgctgt aaggctctca aaaaggcaat caaggacagt aaacgcgagt gtttcctggc      2580
     cctatgcgac tcggcagagc aggacccatg gggaaaggcg taccagactg tcgtgaagcg      2640
     cttgcatata gacaagactc cggcaccaaa agacgcgcag accgtccggg gcatagtaga      2700
     taccctcttc cctcaaatcg tggacgaatt gcctgtcctg catcccccgc ttcacccaca      2760
     catagaggaa tgcacagtgg acgaggtact tgatatagtc cggaaactca aaccagcgaa      2820
     ggctccggga cccgacggaa tccctaacca tatactgaag atcgcggtct ctttacaagc      2880
     tgagtccttt gtggacttgt ataacagttg cctgagggaa ggtgcctttc catccagatg      2940
     gaaaaaacag aacctagttc tgctaacgaa gccagggaaa acttcgctcg aagcgtcttc      3000
     gttcagaccg atctgcctcc tggacacggc aggcaaagtc ctggagtccc tcatttgcgc      3060
     aaggcttagc tcagccatcc aagccaacgg aggactttcg gagcagcagt tcggtttccg      3120
     gaaggctaag tccacaacgg atgccattgc acgcgtggtt aacattgcgg cggacgcgat      3180
     cgccggtgtt agatggaaag gggggtcaaa ggagtattgt ctggtaacca ccctagacat      3240
     aagaaacgcc ttcaactcgg ccagatggag ccgtatccta gtcgcattag ccgactttgg      3300
     agtcccacgc tacctcctta gttgcgtgcg acaatatttt caaggaagga ccatctgcta      3360
     caccactaat gatggcccag tagtgcggac agtgtctgga ggtgtgcccc aaggctcggt      3420
     actgggacct ttactttgga acacgatgta cgacggagtc ttacgcctga agtttccgcc      3480
     tggcacccac atcacaggtt tcgcggacga tatagttctt gccgtggtcg ccaagaccgt      3540
     caaggaagtt gaggaacgct cgaatgccgc catcaaaagc gtcgagcagt ggctccaggc      3600
     cgccggcctc cagttggcag ctcacaagac ggagtcagtg cttatcagca gcaggaaggc      3660
     tgtggaaact gcgaaagtac aggtgggcag cgctgtgata gaatccaaga gggccattaa      3720
     atatctcggc gttctactgg acactaggct cagttttagg gagcatcttc aacatgctgg      3780
     agaaaaagca gccaaatccg cccacgctct atcgcgcatc ctcttgaaca cgcgcggccc      3840
     gaggcaggga cgacggctac tgctctctac cgtcaccaca tcgacggccc tatacgcagc      3900
     accagcgtgg atcgacggta tgaaggtgaa aagctaccga cgaggtctcg aagcaaccca      3960
     ccgactaagc gctataagag tctgcagtgc attccgcacg gtctcggatg aagcggcgct      4020
     cgtcatcgca ggaatgatgc cgatcgacga acaggcagcg atcatcgagg cagtcgccaa      4080
     ggccagacga ggaggtagct cagatgggcc gggagcaacg cgcagcctag cgaggcaaca      4140
     aagcatgcgg aggtggcaag agcgttggga cacctcgacc aagggaaggt ggacgcacaa      4200
     gctcatccct gatattagcg cgtgggttct gcgtaagcac ggcgaggtaa accattacct      4260
     gacccaactg ctaagtggtc acggctgctt caggacatat ctgaggaggt tcggccacga      4320
     aacttcggac gaatgcacct ggtgcggcag cggaataccc gaagacgccg agcatatttt      4380
     gctgcattgc cccaggttcg aagcggcaag attttccctg gagtgtgcaa tggggcatcg      4440
     cgcaacattg gaaaatctga ccaggctgat ggtcgctgat ccccgagcct gggatgccgt      4500
     cagcactttc gcgtcggtgg tgatgaagga gctcagaagg ctcgaacgtc agaggcacga      4560
     ggaatgatcg cccagggccc tgtgaagcag tacctaaaag tagtcccgct tgaccctgta      4620
     tttgtatcca cctccccctc taacctcacg agtgtattgt actgttcttt gtttggtgac      4680
     gccataattt attgttatta tactcttttc tttatatgtt acgttaatat gttgttattt      4740
     atatatgagt aataaatgga attaaaaaaa aaaaaaaaaa aaaa                       4784
//
ID   R1-11_DTa   repbase;    DNA;    INV; 5200 BP.
XX
AC   .
XX
DT   25-JUL-2021 (Rel. 26.10, Created)
DT   01-SEP-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5200
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5906-5906 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 5200 BP; 1828 A; 1097 C; 1252 G; 1012 T; 11 other;
     cccgcagggg cacccaacac cgggtgacgg gcctgatata cccgcggacc cccagtcacg        60
     gcaagacact ggaacgataa attgacttac attatgcaca caaaagacga tttatgatat       120
     cgggcttgac gaatgcagca tactgacacc ttagtgcgca agagtgacat tttgcagaaa       180
     cggctatcgg gataatgtta ctttcgcctc cgtccagtta aaacttagca agtctcttcg       240
     tacgttcaaa tcacatcacc gttgactcgg cggtacaggt gcagttgaaa tgattcctgc       300
     tttgcgtccg tcctggctct gaacacaacc gcccatgaag cgttgtgtca accctcgcat       360
     gtacctcact gcttgcatag ggacccatgg ggacatttgg gacaactgta cataggtgag       420
     gagatagcgg cgtagagttt ggacccttta atgcaagatg acaactcaat taacwccaaa       480
     caatatagaa gaagctttcc gaaagagcaa cttgatgggt aggtcgcctc aaagaaacgc       540
     gaccatcgaa aggaaggaaa ataatgaact tgctgaacag aacactccga aaacaggaaa       600
     ggattccgaa gcaccacagc agatagaccc tcaaactcct gaaatagtta ggaaagagac       660
     agcaccgaca acacagcgaa gctccccgcg acaggaacta atatataaga tgagaacatt       720
     agaggaagaa tctctgacca agtgcaaggc aataataagg aagatgaagc gtgcgatgca       780
     aaaacaaaga aacatcagca tggawgtcaa ggacggtaca gctgaactta cggagctctt       840
     cgatgttata gaaagctaca gagcgagctg gaaaaaagct gaagtcgaaa aactaaaaga       900
     matgagtaag gcaataccaa agaccttgaa gatagtcgac accccgctgt cgtcaaccca       960
     aaagagagca gctaccagcc cggcattaca ggactcaagc aaaaaagcca gagataaaga      1020
     atcaaataat ggctttcaaa cagtgactaa caaaaaamgg aaaaaatatg caaaatcgga      1080
     cgaacgaaat wtaaaaagag acgttaatgg wgagaagaaa gataaaccta ggacaagagt      1140
     aagatctcga ccagatgctg tgctagtaag gctaactgaa ggaaagagct atgcagaagt      1200
     tctgagggac ctacgaaata gcgtgaaacc agaaaatgat gtcagtaata tcctgtcgat      1260
     aagaaaaaca agatcaggtg acatgctcct agaattgtct agggggagca aagccgaact      1320
     attatgcgag actatcaaga ccaggctcaa gggtgatgca acggttagaa ccatgaaaca      1380
     gcaaaccaaa ctggaaattc gagatataga cagtattaca gaggaaagtg agatcatttc      1440
     cgcaattaaa actgggatag gagatactac cgaagaaatc aaaattcatc tgactggagt      1500
     aaatagctcg gagcaacgac gggccttcgt taccttaacg acagaagatg cagcgaaaat      1560
     attgaaggac ccaagaatca ggattggctg gaccctgtgt cgagtaaaag aatgcatcga      1620
     cactatgcga tgcttacaaa tgctttggag tgggacacac gcaaagggat tgtaagggac      1680
     cagatcgaag aaacctatgt atcagatgcg gagaggctgg gcacaaaatg aaagaatgca      1740
     aaaacccagt aagatgttgt gtttgcgcag cggaggaaag gatagagcta aaccaccttc      1800
     ctgggacwac aaaatgtcat agcggcgcaa gtaaaaacag ggaatgaaag tcctacaggc      1860
     aaatatgcac agaagcagaa cggccaatga tctgctgctt caaatagcgt tggagcatca      1920
     tgtagatcta gccattatca gcgaacaata caaaactcgg gaggacggtc tgtggataga      1980
     agacgagacg aaaaccgcgg ctttatggat cccagctttc agcaccgtta cacaccacac      2040
     ccccattaga cagaattgct acgtatcagc acaagttgcg gactggaccg ttattagctg      2100
     ctacctaaca ccctccgatg acattacgac tttccaaaga aaactcgaag atatcgaaga      2160
     tgctgccaag caagctcagg gaaaggttct attagcaggt gactttaact caagagcgga      2220
     agaatggggc atggcatcaa ccaactccag aggcaggaaa attctaaaca tggctgcaag      2280
     actcggaatg gtagttgcaa acataggatc aaccgctaca tttagacgac ctggaaatga      2340
     aggaacaatc ccggacataa cgcttgtgtc ggaagaaatg gcaaacaagg tcgccgaatg      2400
     gaaagtatta gaaatcttta acggaagcga tcacgagtat atttcctaca agctgacaca      2460
     aggcgatcaa aatcgctctg aaaatcgtct tagcctagga aaaaagggat ggaacgcaaa      2520
     tagactgagc aaaacaaagc tcatcaacga aattgataga aaagcagata ctatacggca      2580
     aaacgacgag aatataatca acgacactat gtcaattatt aaaaaagcgt gcaacgtcgc      2640
     aatgccaaaa cggggaaacc cacacaggca aggtcaagaa gcatactggt ggacaaatga      2700
     aataaaaatc ttaagagaga aatgcctcaa aactagacgc cgcctcaccc gagcaagacg      2760
     tagaggaata tttactgccc aggaacagga gtacaaaaaa gctaagaagg atcttaatat      2820
     tgctatccgg aaatccaaga ttaataaatg gaagtgcctt tgcaacgatg ttaactctga      2880
     cccttgggga ctaggctaca aaatcgtcat gaagaaactt aggtcccgga gatccttgcc      2940
     ggaactacag gtagaacaga tggacaatat tgtcagagca ctcttcccta ctcatgagat      3000
     tcggccgcgg agaagaacgg tgcccgaccc cgaagaacga gtagacatgt ttacattgga      3060
     agaacttgtc agggcaacaa aaagtttaaa aagtaggaaa gccccgggac ccgataacat      3120
     acctgcggag gtcctgcaag caattgcaga gaggcgacct aatcttctgc tcgatatgtt      3180
     taatgcttgc atccgaaaag gactatttcc cgagcaatgg aaactgcaac gtctggttct      3240
     gataagcaag ggcaaaggag atcccttatc gccatcggca tatcgaccat tatgtatgtt      3300
     aaatacgaca ggaaaactcc tagaaaagat gatcaaacct cgtctagcag cagcagttaa      3360
     cagagccgga ggactctctc caaggcagtt cggttttaga ccagggaggt ccacaataga      3420
     ggcaattcaa aaggtgtatt gcgaagcact acgaagccaa caaggaaatc cctactcgag      3480
     acctatagta ctcttagcaa cactggatgt caaaaacgca tttaacagcg ttaaatggga      3540
     aaatattaca gacgcactag aacacaaatt caaaatcggt ggatacctct tgaaaatatt      3600
     acaaagctac ctcgaagacm ggaagctact gtaccaaaca aaggcaggcg agaaatgtgt      3660
     aaaggtaaca tcaggagctg cacaaggatc aatactggga cccgagctat ggaatattag      3720
     ctacgacgaa atactgcgca tagaaatgcc ggaagacacg accttagtag gatatgcgga      3780
     cgatatagtt gcagttatct cggctagtaa ccccgaaaac gcacagcgta agctaaacca      3840
     ggtgatgctc cgggttaaag gatggatgga caataacggt ttgcagcttg ccacggaaaa      3900
     aaccgagttg ttgctagtga caacgaagca gatcccacta gaaatagata tgagagtagg      3960
     agaaaatatc attaggacgc agaaagtgat aaaatatcta ggagttcgtc ttgagcccaa      4020
     actgacgttt aaggctcaaa ttcagcacgc taaaagccgg gcgaccgaca ctgcaaaatc      4080
     acttagcaga ctcatggcaa acttaggtgg accaatccag tcaaaacgca aactacttat      4140
     ggaagtgaac catgcaatcc tgctttatgg atgtgaggtt tgggctagaa cactgcgtgt      4200
     aaagtgcaga ctaaaaccct tgctcgaagt tcaaaggaca atagcattga ggataatcag      4260
     cgcctataga acggtatcag gaccagcagc tctagtcact gcgggtgtaa taccgattga      4320
     tctcctagca agagaacgcc aaaaagtcta cgagctaaag maaagtggag tagcgacaag      4380
     acaaacaaaa gagctgtgta gagaagagag cctggacttg tggcaaaata gatggcagca      4440
     tgaatgctcg ggaaaatgga cagctacgct tatacccaac ctcaagggct ggacaaaaag      4500
     aaaacacgga aacgttgatt acttcctaac tcaaatgctg actggccacg gctatttcag      4560
     ggcctttttg cacactatcg ggaaaagcgc aaaagctacg tgcatttatg aagacgccga      4620
     gagggacagt gtagaacaca ctatattcca ttgtgatcgg tttcgatcag aacgcacggg      4680
     actaacggat gccattggag atatatcgcc tgaaaacata gttgaacgaa tgataagcag      4740
     tgaggcggcc tggaatcacg ttaaaaccta tgtcggaacg atcttaaggt caaagaaaaa      4800
     cgaacttgat agacgagaaa cggtatagac tgactagtta agaaaggaag agttgaagaa      4860
     aaaaggaacg ggacgaaagg atccagcatg ggtagtctgg acgcagacca tcaaaccggc      4920
     tctgtggatc gtctctcctg gggggccaac ttttatcggt tacggtacgg gttggcaaac      4980
     caatagagac gagccataga gctttgaatt gtacagacga gagcttatgc tgagcaagaa      5040
     gccccacttc aaagaaatgc gaaagctttt ccgaagtgga tgcaggcctg acgagcgggg      5100
     ggtttttagt gggtgcgagc cccacatacc acatctacga cggtagtgtg agatgcataa      5160
     ggmattttcc ccccctcaaw ccaaaaaaaa taataataaa                            5200
//
ID   R1-11_DWi   repbase;    DNA;    INV; 4284 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-11_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4284
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1972-1972 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with ~98% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           478..990
FT                 /product="R1-11_DWi_1p"
FT                 /translation="QTVKQDNEITQGLKAAIQDALGDSAVVRVPKKAIVVE
FT                 IKDILRAYTPDDVLKAVFASQDGDIPADASPRLRKAYGNTQTATQRLPAEL
FT                 AEKLLSEGTIRIGWSVCRVRIKVEPLRCFKCLEFGHVAKNCGSQFNASQQC
FT                 FNCGSTEHHRASECCEEPSCILCTRAGGKCLT"
FT   CDS           1162..4020
FT                 /product="R1-11_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSRGGWIQSLDGGSAIWACESSPCQLENNHAAVGFVR
FT                 AELSGVRIYSCYLAPSLTADAYYGILDALIDDARGHEKVVIAGDFNAWSVD
FT                 WASTNWRGRAVLEALASLDVVLLNEGSQHTFNRGGAASIIDLTFASSGLFN
FT                 SIKWRISNHYTGSDHEGILCDIGANSNRAATTRNSCKGYKAETLNPQLFAE
FT                 SLVINTTNDPETAADAVTTCLTEACNRSMARRGTYRRHHTPVYWWSNDIAA
FT                 ARRDCHIARRQYSRSGGSDNADTLRQQYKAKRKILKRAIKDSKRTLFLELC
FT                 DTADTDPWGKAYNTIVKKLHGHKQQAPTDSEKLGRIVSSLFPAVHDPAETQ
FT                 DPSATPAEYDVEITVREVIDAARKIADDKAPGPDGIPSRATKLAVSLQPEA
FT                 FAELFNLCMRSGIFPSRWKIQKPVLIPKPDKPPXDPSAYRPXCLLDTLGKV
FT                 FERVICSRLEVAIREVGDLAPLQFGFRRARSTVDAIKTVVDIAANAIEGTR
FT                 WKGGDKEYCLIVTLDVKNAFNSARWNKILAALEGFGVPMYLTRIIRGYLSN
FT                 RTLLYSTDDGLRTHHISAGVPQGSVLGPTLWNVMYDGILRLTLPAGCTMVG
FT                 FADDIALVVVAKHLSLVETNCNEAVLMVKSWLDRMGLELAAQKTEAVLVSS
FT                 RKKVETASIKIADETVASKRALRYLGVIIDTRLSFREHLAMTNTKAAGTCR
FT                 ALSRIMLNSRGPKQWRRQLLMTVLKSVILYAAPIWARAAATPSYXRGLAAT
FT                 YRLSALRVCCAFRTVSTEAALVIAGMPPIDLLALEDQEVFLAVRSNNATRR
FT                 VARTEARQRTIDRWQRRWDEALNGRWTHSLIPNIRAWIGRNHGQVSFPMTQ
FT                 FLSGHGCFRSYLHRFKIDNSALCTWCTEDIEEDASHALFTCGRFAEQRTRL
FT                 GTQLGTSINAGNLISIMLENESNWRACSDYAASTAAEVRRLERERATXG"
XX
SQ   Sequence 4284 BP; 1256 A; 1005 C; 1122 G; 887 T; 14 other;
     atgtcgccca gagagttggt gtcggatgtc accaatgtgg aagaagtggc gggtcccgat        60
     cggccgttag tctcsgatat tccggaactt satgagctgg scaagctgct ctatgcactg       120
     kccaaaacct tcacmacaaa ggaaggtggc aagccaccaa ctcgkcatgt aactgcaggt       180
     aacaaggacg cgattacgag aatgtacgag ctccaaagac tgctctgtca aaatgcgatt       240
     gccggcaaac tcgcaagcaa gcccataacg agcgaaagag cgacgcaaat gtcccccgag       300
     gccgccaaag tggwacttaa aaagccgaaa ccgactcgaa atcwgcccaa tgtggacctg       360
     tgcctacaaa atggcaataa agtcactccg aagaggcccc gcgaggaaca gccatcaaat       420
     agaaactcac caatsaagaa gcggcgggct cacgatagac tgagktcggg catgtagcaa       480
     acggtgaagc aggataacga aatcacacag gggctaaagg cggctataca agatgcactt       540
     ggcgatagcg cagtagtccg agttcccaaa aaggcgatcg ttgtggaaat taaggacatc       600
     ctgagggctt acacgccaga cgatgtgctc aaagcagtgt tcgcatcgca agacggagat       660
     attccagcag atgcatcgcc aagactacga aaggcatacg gcaacacgca gacagcgaca       720
     caacgactac cagccgagct ggccgaaaag ctacttagcg agggcacaat tcgaatcgga       780
     tggtcagtct gtagggtgag gatcaaggta gaaccactca gatgcttcaa atgcttggag       840
     ttcgggcatg tagcaaaaaa ctgtggcagc caatttaacg catctcaaca gtgcttcaat       900
     tgtggcagca cagagcacca tcgtgccagc gaatgttgtg aagaaccatc gtgcatcctc       960
     tgtacccgag cggggggaaa atgtctcaca taaaacgcta agcagggtgt gtccggcgtt      1020
     cctgaaggcc ttaaacaaaa tcagggatgt ttagagcact gcagctcaac ctcaatcatt      1080
     gcagggccgc ccatgactta ctgactcagt cagtcaggga gttacgggta gcggctgcat      1140
     tgataagtga gccttacccg catgagtaga ggaggctgga ttcagtcgct ggatggagga      1200
     tcagcaattt gggcatgtga aagttcgcca tgtcaattgg aaaataatca cgcagctgtt      1260
     ggatttgtaa gagcagagtt atctggcgta cgaatatata gctgttactt ggcccccagc      1320
     ctaactgccg atgcttatta tggcattcta gatgccctaa ttgacgacgc cagaggccac      1380
     gaaaaggtgg tcatagcagg cgattttaac gcctggtctg tggattgggc aagcacaaac      1440
     tggaggggaa gagccgttct tgaggcgtta gcatccctcg atgtggttct gctcaacgag      1500
     ggatcgcaac acacttttaa caggggtggt gcagcgtcga taattgacct gacatttgcc      1560
     agcagcgggc tgttcaacag tataaaatgg aggatcagca accactacac cggcagtgac      1620
     catgaaggca ttttgtgcga cataggagcc aatagcaata gagcagcaac tacgcgcaac      1680
     tcgtgcaaag ggtacaaagc tgagacgcta aacccgcagc tattcgccga atcgctggtc      1740
     attaatacca caaatgaccc ggagactgca gcagatgcgg tgacaacttg cctcacagaa      1800
     gcatgtaaca ggagtatggc aagacgaggc acatatcggc gacaccacac acccgtgtac      1860
     tggtggtcta acgatatcgc cgcagctaga agagactgcc acatagcgcg tcgccaatat      1920
     tctcggtcag gaggcagcga taatgcggat acactgaggc agcagtataa ggctaagaga      1980
     aaaatactca aaagagcaat caaagacagc aagcgtacgc tatttctcga actttgtgac      2040
     acggccgaca cagatccttg gggaaaggca tataatacaa ttgtaaaaaa gcttcacggg      2100
     cacaagcagc aagctccgac agactccgag aaactcggcc gcatcgtatc tagccttttc      2160
     ccggcagtgc atgacccagc agaaacgcaa gatccatcgg cgacaccagc agaatatgat      2220
     gtagagatta cggtaagaga ggtaattgat gctgcaagga aaatcgcaga cgacaaagcg      2280
     ccaggcccag atggaatacc aagccgcgcc actaagctag cggtgtccct gcagcccgag      2340
     gcgttcgcag aactctttaa cctatgcatg aggtcaggca tattcccaag cagatggaaa      2400
     atccagaaac cggtccttat tcccaagcct gataagccac cagakgatcc ctcagcatat      2460
     aggcccaytt gcctgctaga cactctaggc aaagtgtttg aaagagtcat ctgcagcaga      2520
     ctggaagtgg ccataagaga ggtaggggac ttggctccgc ttcagttcgg gtttcgcaga      2580
     gcacgctcga ctgtcgatgc cataaaaaca gttgtagaca tagcggcaaa tgcaattgaa      2640
     ggcacaagat ggaaaggcgg agacaaggag tattgcctga tagtcacact tgacgtcaaa      2700
     aatgcattta attctgcccg ctggaataaa attctagctg cattggaagg ctttggagtg      2760
     cccatgtacc taacacgtat catacgtggc tatctcagca accggactct cctgtacagt      2820
     accgatgacg ggcttagaac gcatcacatc tcagccggag tccctcaggg ctcggtatta      2880
     gggccgacat tatggaatgt aatgtatgac ggcattcttc gtttgacgct accggcagga      2940
     tgcacgatgg tgggcttcgc cgacgacatt gcactggtgg tagtggcgaa gcatctgagc      3000
     ctggtagaaa ctaactgcaa tgaggcagtg ttgatggtca aaagttggct ggacagaatg      3060
     gggttggagc tggcggcaca aaaaacggag gcagtgctag tcagtagcag aaaaaaggtg      3120
     gagacagcat caatcaaaat tgcggatgaa acggttgcgt ctaagcgagc actgcgttac      3180
     cttggagtaa taattgatac caggctaagt ttcagggaac atttggcgat gactaacaca      3240
     aaggctgcag gcacttgcag ggcactttcg cgtataatgc tcaactccag gggccccaaa      3300
     caatggagaa ggcagctcct catgacggtt cttaaatccg ttatcttata tgccgcgccc      3360
     atatgggcca gagcagcagc aacacctagc tacwccagag gattggcagc gacatatcgg      3420
     ctgagtgctc tacgagtctg ctgtgcattc aggacggtat ccacggaggc agcactggta      3480
     attgcgggca tgccaccaat tgatctacta gccctagagg atcaggaagt gttcttggca      3540
     gttcgcagca acaacgcaac tagaagggtc gctcgcacag aggcgaggca gcgcacgatt      3600
     gatagatggc aaaggaggtg ggatgaggca ttgaacggaa gatggactca ctcgcttata      3660
     ccgaatataa gagcctggat aggaagaaat catggccaag tgtcgttccc gatgacacaa      3720
     ttcttaagcg ggcacggctg ctttcgcagc tatctgcatc gtttcaagat cgacaatagt      3780
     gcgctatgca cttggtgcac cgaagacatt gaggaggatg ctagccatgc actatttacg      3840
     tgtggccgat ttgcggagca gcggactcgg ctgggaacac agctgggtac atctattaac      3900
     gcgggcaatc taatatcgat tatgttagaa aacgaatcta actggagagc atgcagcgac      3960
     tatgcggcat ctacagcagc tgaagttcgc aggctagaac gcgagagggc tacgktaggg      4020
     taagtaggga atttctgtgc tttcgatgca atggcccact ggctagtccc gaaagtaatg      4080
     ttccctacac ccaaatgcac aagccaccag cagtaacaaa ctttctcttt cctatatttc      4140
     tgtttatttt ttttcttacc tatgtagcct atgttattac ttgtaatatt tattgttaaa      4200
     tttctataac ttactatact atatcctcac catctaaata aatgaatgaa caaaaaaaaa      4260
     aaaacaaaaa atataaaaaa gaaa                                             4284
//
ID   R1-11_PPo   repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-11_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-131
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3141-3141 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus. 5'-truncated.
XX
SQ   Sequence 131 BP; 24 A; 35 C; 42 G; 30 T; 0 other;
     taggggcggt gtgttccagg agatcccgcc tcttattgcg gttggggcca ccgtggggtt        60
     ttagtcggcg cgagtccgac atacaccctg tcccgcaggg gtatgcgtag gcatttcccc       120
     acgtaaaaaa a                                                            131
//
ID   R1-12_DTa   repbase;    DNA;    INV; 4649 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4649
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           393..1469
FT                 /product="R1-12_DTa_1p"
FT                 /translation="MAGVFQPSRKIPRSPILTAAPGPSQQSVTHHAGQESG
FT                 QDTPKRQREVSSPTGSLRKTPAKKSKADHELKRSENLVEIGSILDQLIELI
FT                 NVKQVRHINLQMKEMFKKMKALQEDASSQCIEAAGPSRTSPIAKECPTCRA
FT                 KIGNAVDKQQQTTNSRRRDDATQTVAIQTEPAPMHRPAEPITQENVGMGNR
FT                 PKEKAILSKRREKSTFAKQPDGNPIPSRSRPDAWQKAEPRKRARKNRRPEA
FT                 VVIEANGKSYSEVLAMVTRRSDGKLQDLSESVNKVRRTASGNLLLELSRGS
FT                 NSSAVLMKKDLESVLEGAAAVRALSEDTRVQFLVLSDLDPLVVAEDLTKAL
FT                 VDQFDVEANAVKLKSL"
XX
SQ   Sequence 4649 BP; 1286 A; 1232 C; 1351 G; 780 T; 0 other;
     gccatgggga aactcatgac caccgttgga tcccaactgt gccaccaaac ccactctctg        60
     gaaaatccac gttgcgtctg acccatagtg ggcggcttcg tggtctgcgt ctgcgccata       120
     gtggccggca gtactaaaaa aacctggcag caggtataaa atgcaaaaac ctggcagaag       180
     gtataaactg cttcatgaga aggaatgtcg attaaaaaca taactactcc aggtggcaac       240
     cacttaagtg gaaatccacc cgtggacaca tccacggcag gggcacggat tctggaggcc       300
     ccaaatccca ttctaaccaa acctgaagag gtggtggtag gcttggccac ctcggcagtg       360
     aagcaacaag ctcaaaggag aaggagaatg acatggcggg agtcttccag cccagcagga       420
     agatcccgcg atcaccaatt ctgacagcgg ccccaggccc ttcccagcaa agcgtcacac       480
     accacgctgg ccaggagagc gggcaagaca cgcctaagcg gcagagggag gtcagtagcc       540
     ccaccggatc gctcaggaaa acgccggcaa agaagtcgaa ggccgatcat gagctcaagc       600
     gcagcgaaaa cctggtggag atcgggtcga tcctcgacca gcttatagag ctcataaacg       660
     tcaagcaagt gcgccacatc aacttacaga tgaaggagat gtttaagaaa atgaaggctc       720
     tgcaggaaga cgccagcagc caatgcatag aggccgccgg acccagcagg accagtccca       780
     tagcgaaaga gtgcccaacg tgcagggcaa aaatagggaa tgctgttgat aaacagcagc       840
     agaccacaaa cagcagaagg cgtgacgacg caacgcagac ggtcgccata caaacagagc       900
     cagccccaat gcaccgccca gctgagccga tcactcagga aaacgtcggc atgggcaata       960
     ggccgaagga gaaagcaatt ctctcaaaac gccgagagaa aagcaccttc gctaagcagc      1020
     ccgatgggaa ccctatcccg agccgaagcc gcccagacgc gtggcagaaa gccgagccta      1080
     ggaagagagc ccgcaaaaat aggcgaccag aagcagtggt catcgaggcc aacgggaaat      1140
     cctacagcga ggtcctggcg atggtcaccc ggcgaagcga cggcaagcta caggatctta      1200
     gcgagagcgt gaacaaggtg cgtcgcacag caagtggcaa ccttttgctc gagctcagca      1260
     gaggcagcaa cagtagcgcc gtgctgatga agaaggacct ggaatccgtg ctggaaggag      1320
     ctgcggcggt aagggcactt tcagaggaca cgagagtgca attcctagtg ttaagcgact      1380
     tagaccctct agttgtagca gaggatctca caaaggcact agtggaccag tttgacgtcg      1440
     aggccaacgc agtcaaactg aagagccttt gaccgtcctt cagggacaca cagtcggcca      1500
     cgatagggct gccgtgtaag aggcaaaagc ggtccttgca aagggcaagc taaaggtggg      1560
     ctggacagtc tgcagagtca gcgagatcgg ccatatcgca gcgcgatgcg ctagcaaggt      1620
     ggacaggagc ggaggctgtt ttcgttgcgg agaaaagggg cacaagatcg ctcagtgccc      1680
     aaacggcagt ttatgctttt tgtgtgcagg tagcgacccc aaagcgagaa accacatggc      1740
     aggcagtcgc cagtgcccgc acgcaacgag acccgtacgc aagcctagcg tatggaagtg      1800
     attcaattaa acttgaatca ctgtagagcg gaccacgact tgcttcagca aaccgtgcgc      1860
     gagcagaaga cggactacgc catcctgagc gaaccctacc gaacgggcga cgacgaagaa      1920
     tggaccgcgg acctatcggg taaagccgcc atttggaggt gcggtagaag cgcgcagaac      1980
     ataagggagg tgaggcgagc gaatggattc gtccgcggaa aggtgggcca gtactggatc      2040
     tacagctgct acctcgcccc cagcctctcg ctcgcgacct ttggcgaaac catagacgaa      2100
     atctgtgcgg atgcccgagg gaagctcaac gtcctgttgg cgggagattt caacgcgtgg      2160
     gctgtcgact ggggaagtca gtggacaaac gcgagaggac gcatagtggt agaggccgtc      2220
     gcctcgctag acctggtgct cctgaacgaa ggctcccaac agacgttcaa cagggcagga      2280
     gctggctcag tgatagatct gacgtttgcg agttcttcac agccagcgat catgaggcca      2340
     tcttgtgcag cctgggggta cggccgagca ggacggaaac ccagccgcgt attataaagg      2400
     catacaggac ggatacccta aacgtaccag agttcttaag agcggcccaa ggtctaaatg      2460
     gagcccagcc caacagcgct aacgaggcag ccgacacatt cgccgcacgc ctagagtccg      2520
     catgcgacag agggatgcag cagcggaaac attaccggca gaacacgcgc caacgtactg      2580
     gtggaatcag gacattgaag atccacgtcg atcgtgctta cacgctagga ggcagctgca      2640
     gcgatcgaga ggatcagaca ggttcgagga gtgccaccaa tatttcaaag agaagagaag      2700
     ggctctaaaa gtggccataa gagcgtccaa gaggtcatgc tatctgcagc tctgcgattc      2760
     agcggaaggc aacccatggg gcagcgccta caggctagtg ataaagagta cccggcagct      2820
     gtgtcggaga tgctcaacaa gtgcctccgg gaaggacaat ttccggcaag gtggaagaga      2880
     caaaagcttc tgctgctggc gaagccaggg aagccaccgg gggaaccgtc ctcctaccga      2940
     cccatctgcc tactggacac cataggaaag gtcctggagt cagtaatctc gaccagactc      3000
     aacgcggcac tagaggcatc cggcggctta ttccgaccgc cagttcgggt tccgaaagcg      3060
     ccggtcaact gtggatgcag tcaaaacggt cgtcgactta gcccgcgatg caatcgctgg      3120
     gacaagatgg aagggtggcg acaagaagta ctgcttaatg gtcacactag acattcgcaa      3180
     cgccttcaat tcggctaact gggatcggac gatggaggct ctcaggaact tcaacgtacc      3240
     tgggtacctg cttaacatca tcgacagcta cttcagcaac agagtgctgt tgtacgaaac      3300
     aagcggcgga gcagcatcat acgacgtaac ggctggcgtt ccacaaggct ccgttctggg      3360
     tcccctcctt tggaacacga tgtacgacgg ggtcctaaga ctggagttcc cagaggatac      3420
     cacggtgatc gggttcgccg acgacgtagc cctcgttgtc gtcgccaagg aactggcgga      3480
     taccgagtct agagcgaatg aaagcataag agcggtagaa gactggttgg ctcacgccgg      3540
     cctcgcgtta gctccacaca agaccgaggc agtcctgttt tcgagccggc aacaggtaga      3600
     gacggcatgt gtctcggttg gtggcacctc aatatcatcg cagagagcca tcaggtatct      3660
     cggcgtattc tggacaccaa actgtcgttc cgggagcacc ttgattacgc gcacgaaaag      3720
     gcaaccgcta ctgtaagagg tctgtcccga atcctcctaa acaccagggg ccctaggcag      3780
     gataccagga aattgctaat gagcgtggca tcgtcgcaaa ttctgtacgc agctccggtg      3840
     tgggcggacg ccatggccgt cttggagcaa taagggtcgc ctgtgccttc cgaacaatat      3900
     cggatgatgc agtcctagta atcgctggac tggcaccaat aagcgagaga gcgcgcgagg      3960
     ccaaagagat ctaccaagca aggcagcgag gcgacacgaa cgtggcgcaa cgcaaaagcg      4020
     aatggcgcgc taagactctg agcaactggc aaaggaactg ggaagcgtct agcaaaggga      4080
     gatggaccta caaactcatc cccaacatcg aggaatgggt atcccgtaag cacggccagg      4140
     tcgacttcta cctgactcag gctctaagcg gccatgggtg ctttcgaagc tacctcaagc      4200
     gcttcggcaa ggacacggaa gacgggtgcc cgaaatgcgg cagcggtata ccagaggacg      4260
     caagccacgt aatctttgag tgcaggcggt tcgagttcca aaggcttagg ttggaggaag      4320
     cgacacgctg gagagtaact gcagagaacc tggtccacat aatgctgagt agcaaaagga      4380
     actgggagga ggtagcggaa tatatagccg aggtgatgaa ggcactcagg caggctgaaa      4440
     gagagagaag gtagcatcgt gggctgaccg ggcgaagcaa tgcttagcgg ccgtaccgcc      4500
     cgatcgcggt ccactatagc caccactttt atccccacac ccccattcac ccacacccaa      4560
     taccccacct accattgttt tatatgttat acttatattt attttaaatt ttaataataa      4620
     atcaacactt agaatacaaa aaaaaaaaa                                        4649
//
ID   R1-12_DWi   repbase;    DNA;    INV; 5036 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-11_DWi;
KW   R1-12_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5036
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1973-1973 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with ~96% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..1852
FT                 /product="R1-12_DWi_1p"
FT                 /translation="MMKRTPPPQRQQVARPLAPASSVPVATPDAALVVDAH
FT                 EATPKRLRSPSVGAEGTDGEAANNGACIKKSKVGQVRPTCNELEEMGHILA
FT                 SIATHYSRDKDASGKINRSITNEFREKVARLRELHAAVIGLLQDKGPISQL
FT                 PVACATCSMSPPKRVSRQQQTELVNSPSKRDXPCQTSPXDDSGRHQARPHQ
FT                 QKTQQKNRQHPQKSSTRLQTAQYQQGQQQLHQQSQSSQXGSQQQAMQXQQL
FT                 HPXDVXQPRAQQNXXSSQEWVKVGPSRSSRKPXAKISGKLQKSRPEALLIQ
FT                 ANEGLSYSQVLERVTRRTDGXLDHVREHVMRVRRTAKDGLLLELRKCTADT
FT                 TQSLKEAISQVLGEEAGVKALTRHKAVAIHGMDEKATPQELVAKLADQAKV
FT                 EATSXRVRSFRSSFRNTMSAVVCAPEAVALKLLEVGRVRIGWDSCRIKELE
FT                 AQPARCFRCLCVGHIAANCPSDTDRSNCCFRCGNPGHKSADCSAAVKCFLC
FT                 AEMGLSPLNHIAGSRACPSSGAQRMQKDAK"
FT   CDS           1852..4860
FT                 /product="R1-12_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIQPHLKFLQLNLNHCIAAQDLLQQTVRELSADIALL
FT                 SEPYRVGESGRWAKAACGKAAIWCCGSNVLVMQDVLSADGFVRARIGRNWV
FT                 YSCYLAPSLSLERFGSILDSISNDARGRQGLIIGGDFNAWATEWGSTRTDA
FT                 RGRILLEGFANLSISLLNVGTQHTFRRAGTGSVVDLSYASDXIAASAVWSV
FT                 GVAYSASDHEIVTFSIGRNRHPPARTLPLRKSFKLDTLNPLLFAESLEGLT
FT                 XCPNTNAEEAANLIMSRLDEACVASMAQRGSFSRHHTPVCWWNEAIADARR
FT                 ACLRARRLYQRARHSLNFEALGLEYRRRRKALKVAIRDSKRECFLELCDSA
FT                 EQDPWGKAYQTVVKRVHGNRQSSPSDTTTVRSIVSSLFPDAPELSHVSPLG
FT                 THLQVEECSLAEVIETVRRQKPNKAPGPDSIPNTALKLAVTIHPHVFTELY
FT                 SKCIREGVFPTRWKLQNLVLLPKPGKPPDEASSYRPICLLDTAGKVLESML
FT                 CSRLESAILAGGGLSEHQFGFRKARSTIDAINRVVHLAAEAIDGSRWKGGS
FT                 KEYCIVVTLDVKNAFNSARWDRILDALATFNIPSYLMNCVRSYFRDRRIRY
FT                 STDDGLEERGVSAGVPQGSVLGPLLWNTMYDGVLRLEFEXHTHIVGFADDV
FT                 ALVVSAKDLHVAEERCSVAIAKVGHWLSAAGLKLAAQKTEAVLISSRKRVE
FT                 TARIRVGDSLVVSKRAIKYLGVMLDTRLSFKEHIEYCSSKAAASARSLARI
FT                 LLNTRGPKQGRRLLLSSVVKSTALYAVPSWIKGVEVRSYRRSLESTHRLSA
FT                 IRVCSAFRTISDDAALVIAGMMPIDECAAIASATFVASRQSSGSNITQPRG
FT                 QARLMAWQHSMRRWQERWDSSPKGRWTHALIPDITQWVSRKHGEVDYYLTQ
FT                 LMSGHGCFRSYLKRFHHDVSDECTWCGAGIIEDASHVLQHCPRFDEERHRL
FT                 ERVMGEPVTQCNLAGMMVANSNVWQAAAAFAAHVMKKLRQLERERSAN"
XX
SQ   Sequence 5036 BP; 1278 A; 1283 C; 1415 G; 1039 T; 21 other;
     tggaaacttc tatatatcgt ttttttattm catatttatt tatttattta aacgaaatta        60
     aatttgtata gtctggccat aatttgtttt ccatagtagt ttctttgaat acatagttct       120
     gtttactgtt ccttgtctat tgtcgggctg cgtcaatagg ggcaattgtt ggtgtcgccg       180
     ccgagttgga gcggcataac tcccagcgtt gcggcaagag gaaattcttg tcctgcgagg       240
     gaaattgcct ctagaacgcg cggccgagtc aataatgatg aagcggacgc cgccaccgca       300
     gcggcagcag gtggcaagac cccttgcacc cgcctcgtcg gtgcctgtgg caacaccaga       360
     cgctgcccta gtagtggatg ctcacgaggc aacgccgaaa aggcttagaa gcccatctgt       420
     tggggctgag gggaccgatg gcgaggcagc caataacggg gcctgcatta aaaaaagcaa       480
     ggtggggcag gtgcggccta cttgcaacga gttggaggaa atgggccata ttctggcctc       540
     aattgctacc cattatagca gagataagga tgctagtggc aaaattaacc gcagcatcac       600
     taacgagttt agggagaagg ttgctcggct gcgagaactg cacgcagcag tgatcggctt       660
     gcttcaagac aaagggccga tctcgcaatt gccagtggcg tgtgccactt gcagcatgtc       720
     tccacctaaa cgtgtgagta ggcaacagca aaccgaactg gtgaattcac cgtctaagcg       780
     ggataakccs tgtcaaacgt caccaktcga tgactcaggt cgtcaccaag cgaggccaca       840
     ccagcagaag acgcaacaga agaatcgcca acacccacag aagtcgtcta cacggcttca       900
     gacggcgcag taccagcagg ggcagcaaca gctccatcag cagagccaat ccagtcaamt       960
     tggatcacag caacaagcca tgcagcasca gcagctacac ccgwctgatg tgsagcagcc      1020
     tagggcacag caaaatsccc amagcagcca agaatgggta aaggtgggcc cttcgaggtc      1080
     ctcccgcaag cctaamgcga aaatcagtgg gaaactwcag aaatcccgcc cggaggcgct      1140
     actaattcag gcgaacgaag gcttgagtta tagccaagtt ttagagcgcg tgacgaggcg      1200
     cactgacggg cakctggatc acgtccgtga gcacgtaatg cgagttcgac gcaccgctaa      1260
     agatgggctt cttctggaac tccggaaatg cacagcggac acaacccagt cccttaagga      1320
     ggcgatcagt caagtccttg gcgaggaggc aggcgtgaaa gctctaaccc gccataaggc      1380
     tgtagccatt cacggcatgg acgagaaagc gacgccccag gaattagtgg ctaagctggc      1440
     tgaccaagcc aaggtcgagg cgacgtcgmt tagagtaaga agcttccggt ctagttttcg      1500
     gaatacgatg tcagccgtgg tttgtgctcc cgaggcagtg gcattgaaac tcctagaggt      1560
     gggcagagtt cgaattggat gggatagctg ccgaataaag gagctagaag cgcaacctgc      1620
     gcgctgtttt cgwtgcctat gtgttggcca catcgccgca aactgcccaa gcgacacaga      1680
     taggtcaaat tgctgcttca ggtgtggcaa tcctggwcac aagtctgcag actgctcggc      1740
     cgccgtcaag tgctttttat gtgccgagat gggcctgagt cccttaaacc acatagcggg      1800
     tagccgcgcg tgcccatcca gtggtgccca gaggatgcag aaggacgcca aatgattcaa      1860
     ccccatttga agttcttgca gttgaacctg aatcactgca tagcggctca ggacctgctt      1920
     cagcagactg tgcgtgagtt gtcggcggat atagctctac tgagtgagcc ctatagagta      1980
     ggagaaagtg gtcgctgggc caaggcagcg tgcggcaaag cagcaatttg gtgctgcggt      2040
     agtaacgtgc tagtcatgca ggacgtccta tctgcggacg gctttgtcag agcgcggatc      2100
     ggcagaaact gggtgtacag ctgctacctt gcacccagcc tgtcactgga gcgtttcgga      2160
     agcattctag acagcatctc gaacgacgca agaggacgcc aaggtctcat catcggtggg      2220
     gatttcaacg cctgggccac cgagtggggc agcacccgta ctgacgcccg cggccgtatt      2280
     cttcttgaag gttttgccaa cttaagcata tctctgctta acgtcggcac acaacacacc      2340
     ttccgaaggg ccggcacagg atcggtggtg gatctttcct acgccagcga cwgtattgct      2400
     gcttcggctg tttggagcgt aggcgtggca tactctgcca gcgaccatga aatwgtgaca      2460
     ttctccatag gcagaaacag gcacccgcca gcgcgaacgt taccgcttcg gaaatccttc      2520
     aagctggaca ctctcaaccc gcttttgttc gctgaaagcc tggaaggact cacggwgtgc      2580
     cccaacacaa atgcagaaga ggctgcgaac ctgatcatgt cgagactcga tgaagcgtgt      2640
     gttgccagca tggcccagcg tgggtcattc tcgcgccacc acaccccagt ctgctggtgg      2700
     aacgaggcaa tcgctgatgc cagaagggct tgtcttcgag cgagacggct atatcagcgg      2760
     gcaagacatt cgctcaactt cgaggcactc ggtctggagt acagaaggcg gaggaaagcc      2820
     cttaaggtgg cgatcaggga tagcaagcga gaatgtttcc tcgagctatg tgattcggca      2880
     gaacaagacc cttggggcaa agcctaccag acggtggtca aacgagtaca cggaaacagg      2940
     cagtcatccc catcagacac aaccactgta cgctccatcg tcagcagcct atttcccgac      3000
     gccccggagt tatcgcatgt gtctcccttg gggacacacc twcaagtgga agaatgctcg      3060
     ctcgctgagg tcatcgagac ggtgaggcgt caaaagccaa ataaagcccc gggtcccgac      3120
     tctatcccca acaccgcact taaactggca gtaacgatac accctcatgt attcacggag      3180
     ttgtactcaa aatgcataag agaaggagtc tttcccacca ggtggaagtt acaaaacctt      3240
     gtgttgttgc ccaagcccgg aaaaccacca gacgaggcat cctcgtatag gcccatttgc      3300
     ctgttggata cagctggcaa ggtgctggag tcgatgcttt gctcgagact ggagtcggcg      3360
     atattagcag gcgggggctt atccgagcac cagttcggat tcagaaaggc cagatccaca      3420
     atcgacgcaa taaaccgtgt ggttcacctg gcagctgagg caatcgacgg ctctagatgg      3480
     aaaggcggca gtaaagaata ctgtatcgtg gtgacgctcg acgtgaagaa cgcgtttaac      3540
     tcagcaaggt gggatcgcat actggacgcg ctggcaacat tcaatatccc aagctatttg      3600
     atgaactgcg tgcggagcta ctttcgtgac aggagaatcc gatactcaac ggatgatggc      3660
     ctggaagaaa gaggggtatc ggctggtgtt ccacaaggat ccgtcttggg ccccttgttg      3720
     tggaacacca tgtatgacgg agtcctgcgc cttgagttcg agcmgcacac acacattgtc      3780
     gggtttgctg acgatgtcgc actggtggtt tcggccaagg accttcacgt cgccgaagag      3840
     cgttgtagcg tggcgatagc caaagttggc cactggctat cggccgcagg gcttaaattg      3900
     gcagcgcaaa agaccgaggc ggtgctcatt agcagccgga agcgcgtcga aaccgcaaga      3960
     atcagagtag gtgactccct cgtggtatcc aagcgtgcca ttaaatacct aggtgtcatg      4020
     cttgacacta gattgtcctt caaggagcac atagaatact gcagtagcaa ggcagctgcg      4080
     tcggcccggt ccctagcccg tatattgctg aatacgcgtg gcccgaagca aggacggcgc      4140
     ctgctactat cgagcgtcgt aaaatccact gccctgtacg cagttccttc gtggattaaa      4200
     ggtgtggagg ttaggagcta caggaggagc ctcgagtcga ctcatcgtct aagtgcgatt      4260
     agagtgtgta gcgctttccg caccatatcc gatgacgcag ctctggtgat cgctggaatg      4320
     atgcccatcg atgaatgtgc ggcaattgcg tcggccacgt ttgtagcatc aaggcaatca      4380
     agtggcagca acataaccca accaagagga caggcgcgac tcatggcatg gcagcactcc      4440
     atgcgcagat ggcaagagag gtgggactcc tcgcccaagg gacggtggac ccatgcacta      4500
     atcccggaca tcacacaatg ggtgtcgagg aagcacggtg aggttgacta ctaccttact      4560
     cagctcatga gcggccacgg gtgcttcagg agttacctga agaggttcca ccacgatgtc      4620
     tccgacgagt gcacatggtg cggcgctggc atcatagaag atgcgagtca tgtgctgcaa      4680
     cactgcccaa gatttgacga ggaaagacac cggttggaga gggtcatggg cgagccggtg      4740
     acgcagtgta acctcgccgg gatgatggtc gcaaactcta acgtgtggca ggcggccgcc      4800
     gccttcgccg cacacgtgat gaagaaactt aggcagttgg agagggaaag gtcggcgaat      4860
     taaagaagca cacggtctgt gaagcaatac cgacaagtcg tcccgcagta accgtaatcc      4920
     ttttttcatt atgcccgact tcgtatgttt gttcccttgt tatgttattt gtaattatgt      4980
     tagcaatgtt ttaaatgaaa taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa          5036
//
ID   R1-12_PPo   repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-12_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-240
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3142-3142 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 240 BP; 52 A; 66 C; 83 G; 38 T; 1 other;
     ggggcgcctt aggggcagcg tcccaatttg ggacgcacga gggccccttc ccggggcggt        60
     cagtggggcg tcgcggtggc aagcgcaagc gatcccgtgg cgtcccacac aatggccagg       120
     agggaacgaa ggggtttagt gaggtatgcc ccccactatg gggggagagt cccacataac       180
     tcacgtgtct gccccgaggc atggagtatg cgtaamgcat tccccttcgg aaaaaaaaaa       240
//
ID   R1-13_DTa   repbase;    DNA;    INV; 3649 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3649
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(986..2635,2635..3561)
FT                 /product="R1-13_DTa_1p"
FT                 /translation="MSGMSAKNNSTPGGSHKSGNPPVGTPTVRARILEGLP
FT                 NIPTHPAVAVADLAATLGNAPSQKEETSKGDAAAFRKSSLLARSPPLAPSP
FT                 VPERSAVGDPVDSAKRGRDPASLTSGPKGTLPKKSKAAQEEPTSDAEKEQE
FT                 QALTRTECVTKLEKLLDELHSLVHEKQVRQINMKAMIAEMRKLKSGIEQSA
FT                 VEPEETSALESVGCKCSLTQPAGKPVETKAQQTAVVPRKDRAVQTDPWRRV
FT                 SQQDCIAGASVAPKQRRAPPTQTTAPAAPRNGAKKARPDALAMPQVSERRQ
FT                 GSSVRPPEPEPMTAGNSWSTVARKRKQTRRARPDAVVVEAPGSEILALVTR
FT                 REDSQLTDLGGAVTKVRRSARGNLLLEVARGTSESVESMRDSISRVLGDAA
FT                 EVRALTEESKVCVFDIRNLDAITTESEIRTAPAEQYQLSEGAVRIRSLRPG
FT                 YGESKTAVFSLPCSMAKEVRRRGEVRIAWTRCRVRELGHIAIRCKSLVDKS
FT                 GCCIKCGESVHKAVACKKEPVNPPVSSRKVNARPGSKSSQAGNGGTGIPSN
FT                 VCNLIQLNLNHCRAAQDLLMQTVREVAADVAILSEPYRVSVGGEWAKDRSG
FT                 KAALWLCGDRRLRMSNILAVDGFVRAEVGSYSIYSCYLAPSLPLEAFCRIL
FT                 DDLSSDLRGRANVIVGGDFNAWAQEWGSVSTNVRGRAVLKAFASTDVVLLN
FT                 DGERHTFARAGAASIIDLTYVSGTISQTARWGICDAYTGSDHEAILCSVGV
FT                 SAEDTRSVPRPRKAYRPDTLCTQAFANALDGMAAEVTGGANEMANRIATTL
FT                 ELACDQSMRLRDSFRRNHRPVIWWSDLIADLRTTCLRARRQLTHARGTPRV
FT                 AWRSEA"
XX
SQ   Sequence 3649 BP; 904 A; 1004 C; 1127 G; 614 T; 0 other;
     gtgtgtgtga agtcgccggg cacggatgcg tcgcggtggc gctcccccga tgaacgcgtg        60
     gtgtgagggc tgtggcaggg ccccctgtaa aatcagatgc taaccggccg cgtgaaacgg       120
     ctgagctcgc tcacctgcag tgtcataccc gtggtgtcca cggaggattc aggtagtccg       180
     atcttccaat ccttagatct gggccagcgg agggtgtggt gagaatactt ccccagataa       240
     ccttcatggt tgttgttgcc tccgctcgta aacgtctctc tcgcggtaaa tgtggctgcc       300
     cccgcagcat acgccagtca cgtcagctgt cggcaagatc agctgtgacc gagtgttgag       360
     aagcaccaat aaaatcgcac aggtctggca acactccgcc gccaacaggg ggcgctgtgc       420
     taatcgacca gcaggaggcg ctgtcgccag tttttgtgct gactaaagct acatgctatg       480
     acgtgcgtat gcaatctgca tagcatagct ttcagggctg ctgctcttga tccttggcag       540
     gaggtagtgg aatgcgggtg aaacccaaac acaaggctcg cacagaggaa ctttaaggtg       600
     gtaaaggtca tggagcagac caattgccaa ccccaccgct gggcggtaca cctttaaacg       660
     gggctctggc gactcccacc tgcttagtca cggggaaacc aacgaggcca acgagggacc       720
     tcgcaagtac acatgccgcc cccgccccac ccctccacgt agcgtctgtc ccacaatggg       780
     cggctacgtg atctgcgtct gggccatagt ggtcggtaga aaatcaagca gcaggccata       840
     gctgcaccca aaaaaaaaaa tccaggtagc gtctgaccca aagtgagcgg ctatttggtc       900
     tgcgtctgcg ccatagtggc cggcagcttc agtacctggc agaaggtata aaatgcagcc       960
     tagcattggg cgacaatgca actgaatgtc tggaatgtct gctaaaaaca attctactcc      1020
     aggtggcagc cacaagagtg gaaatccacc cgtgggaacc cccacggtta gggcaaggat      1080
     tctggagggc ctaccaaaca ttccaacaca ccctgccgtg gcggtggctg acttggccgc      1140
     cacgctaggt aatgcaccaa gccagaagga ggagacgagc aagggagacg cagcggcttt      1200
     caggaagagc agtctgctgg cccgatcccc acccctcgcg ccatccccgg tgccggagag      1260
     gagtgcggtc ggcgatccgg tagactcggc caagaggggc agagacccgg ccagtctgac      1320
     gagcggtccg aagggtacgc tcccaaaaaa gagcaaagct gcccaggagg agcccacttc      1380
     tgacgctgaa aaggagcagg agcaggcgct cactcgtacc gagtgcgtca ccaagctcga      1440
     aaagctgctg gacgaactcc acagcctggt gcacgagaag caggtgcgcc aaattaatat      1500
     gaaggcgatg atagcggaga tgcggaagct caaatctggc atcgagcagt cggcagtgga      1560
     gcccgaggaa acgagtgcgc tggagagcgt aggctgcaaa tgctccctga cccaaccagc      1620
     tgggaagcct gtcgaaacca aggcacagca gacggcggta gtgccgagga aagaccgggc      1680
     agttcagact gacccgtgga gaagggtcag ccagcaagac tgcatagccg gggctagtgt      1740
     cgcccccaaa cagaggcgag cccctccaac ccagaccaca gcccccgcag cgccaaggaa      1800
     cggcgccaaa aaggctcggc cagatgccct agcgatgcct caggtatcgg agcgtcggca      1860
     agggagttca gtaaggccac ccgagcccga gcccatgact gccgggaatt cgtggagcac      1920
     agtggctaga aagagaaaac agactcgcag agcacgccca gacgcggtgg tagtggaagc      1980
     tccagggagc gagatcctgg ccctggtcac gagaagggag gacagccagc tgaccgatct      2040
     cggaggggct gtcaccaaag tgcgtcggtc ggctagggga aatttactcc ttgaggtagc      2100
     cagagggaca tcagagagcg tcgagtccat gagagacagc atctccaggg tcctgggcga      2160
     cgctgcggaa gtgcgagccc taacggagga gtcgaaggtc tgcgtcttcg atatacgcaa      2220
     cctcgacgcg atcacgacgg aaagcgagat acgtaccgcc cccgccgagc aatatcagct      2280
     aagcgaagga gcagtgagaa tacgaagtct ccgccccggg tacggggaat caaaaacggc      2340
     ggtctttagc ctgccttgct cgatggcgaa ggaagtcagg cggcgcgggg aggtccgtat      2400
     agcctggacc aggtgcagag tgcgggagct aggacacatc gccattaggt gtaagagtct      2460
     cgtggacaaa agcggctgct gtatcaagtg cggcgaatca gtccacaagg cagttgcctg      2520
     caaaaaggag ccagtgaacc ctccagtgag ttccagaaag gtcaacgctc gacccggcag      2580
     caaaagcagt caggccggaa acggcggtac cggtatcccg agcaacgtat gtaattgatt      2640
     cagctcaacc tgaatcactg cagagcggcg caggacctgc tgatgcagac ggtgcgcgag      2700
     gtagcggcgg atgtggccat acttagcgag ccatacaggg tgagtgtggg aggagagtgg      2760
     gcaaaggacc gctctggcaa ggcggccctt tggctctgcg gagacaggcg actgaggatg      2820
     tccaacattc tggcagtgga cggattcgtg cgggcggagg ttggcagcta ctccatatat      2880
     agctgctacc tggcgcctag tctcccactg gaggcgttct gtaggatctt ggacgaccta      2940
     agctccgatc tacgtggcag ggccaacgtt atagtcggag gagacttcaa cgcctgggcc      3000
     caggagtggg gatccgtctc gaccaacgtc agaggacgcg cggtactcaa ggcgtttgca      3060
     tcgacagacg tcgtcctcct caacgacggt gagcggcata cgtttgcaag agcaggagcc      3120
     gcctccatca tcgacctaac gtatgtgagt ggaacaattt cccaaacagc tagatgggga      3180
     atctgcgacg catataccgg gagcgatcac gaggcgatcc tatgctcagt gggagtttcc      3240
     gcggaagata cccgctcagt accgcggccc agaaaagcct accggcctga cacgctgtgc      3300
     acgcaggctt tcgcaaacgc gttggacggc atggcggccg aagtgacggg tggagccaac      3360
     gagatggcga accgcatcgc aacaaccctg gagcttgcct gcgaccagag tatgcgactg      3420
     agagactcgt tccgaaggaa ccataggcca gtgatctggt ggagcgattt gatcgccgac      3480
     ctcaggacca cctgcctccg agcccgtagg cagctgaccc atgcgcgcgg caccccacga      3540
     gtcgcgtggc gcagtgaggc ctagtgattt ttttaattac atccgagccg taatttataa      3600
     ggttaaaaaa aattaaaatc aataaaaaca cgaatacaaa aaaaaaaaa                  3649
//
ID   R1-13_DWi   repbase;    DNA;    INV; 5097 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-13_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5097
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1974-1974 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 8 sequences with ~96% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           764..1930
FT                 /product="R1-13_DWi_1p"
FT                 /translation="MDTMFNKGDDGKKPVRHINLGTKNAIVRMKELHEAIC
FT                 HIMMGSKSVVKAARSEIATQTSPLNARQPRNDAKXIDLAGNTPKRQREDAI
FT                 VQRNTPPKRQRAMAQNTARRDPEPGTLQKVSTPEPQAAHGAAEWQTVSRKR
FT                 VNKPSLRKARPEVILIKANEGCTYAEILSLVTRRPDGKLDDVKNSVKRTRK
FT                 TATGDLLLELKGGGKANSKKLTEDLSQVLGQQASVRAAGAEAWLEMRNLDN
FT                 LATEEEIKKSMXLKIGDDAEQVNIRGLRKSFRGKQMAILSMPRTIAAKLLK
FT                 EGFIEVGWDMCPIRERHAQKRCYKCLCFGHKAENCTSAKDRTNWCLRCGQT
FT                 EHKAATCNNKPVCFNCVDAKRTDASHYTGSRRCPLATTGEQDASKK"
FT   CDS           1930..4908
FT                 /product="R1-13_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMKILQLNLNHCGAAQDLLAQTIRELNVDVAVLSEPY
FT                 KTQTGCFWAADRTSKAAIWACSNRAPAAEAVYSSDGYVCAKLGDIWLYSCY
FT                 LPPSLRLEEFESRLDNLAAHARGKRKVVIAGDFNAWSHEWGSSSTNARGRS
FT                 LLEAFAILDLAILNTGTSYTFTRADYGSVIDVTFASSQIASAIQWELSSHY
FT                 TASDHMAIICNIGSRAQQTAVQEKRKMYRIDALNSEVFASSLAIPELTGDA
FT                 NKQAEMIMESVVAACDCSMPIRRAHSRHHPHVYWWTNNIAEARKKCLRARR
FT                 AYQRARGSITYSHLGDEFASRRRELKRAIKESKRRCFLQLCDEASSDIWGM
FT                 AYKMTVKKLKAVRPAAPSEGHMVNIVQTLFPDTSYMAPREMLQMDHTDHIS
FT                 VSTDELLAAAAQMHDQKAPGPDAIPNKALKLAVRLQPEKFTQVYSKCFEEC
FT                 IFPDIWKEQDLVLIPKPNKPQDDPSAYRPLCMLDSAAKLLEKLICTRLERA
FT                 IAVAGNLSPMQFGFRKAKSTIHALATVVEIARKSIEGQRWKNGNKKYCLVT
FT                 TLDVKNAFNTANWSRIIEALSMFHVPVPLIALIKDYFRNRKLRYSTRSGDR
FT                 IHEVRGGVPQGSVLGPILWNAMYDGILRISLPTDCHIIGFADDVALVVVAK
FT                 QLSEAEEKTVTSIAIAKQWLANAGLELADQKTEAVLISSRKTVEQAKIVLD
FT                 TCTIRSARAIRYLGVFLDTRLCFREHLGHASARAAELGRSLSRIMLNTRGP
FT                 GQSQRLLLMNVVRSTMLYGAPVWADAMETKSYRRGLEATYRLGALRVCRGF
FT                 RTISDDAALVISSMVPIDLLAKEAQNIFRSRQSAEWLPPARREATAEARRS
FT                 SLAEWQSRWAASQKGRWTFKLIPDLHTWVNRRHGEVTFELTQLLSGHGCFR
FT                 SYLFRFGHESSAECTLCRQGIQESPEHVIFYCMRFTNERQRLTAVLGEEPT
FT                 PFNLVNIMITSQSAWSAVCTYAAATIRTLRELERERNT"
XX
SQ   Sequence 5097 BP; 1522 A; 1254 C; 1289 G; 1024 T; 8 other;
     aactgtgkgt catacaaact gtgcgtcaga acattgagac tcctccgtaa aattgttttc        60
     cttttcggtc ttcttggact ggggaggctt accattacac ggattcmmag tgctccagct       120
     agaagtccca attccacctt ttgggtgggc caaaggtccg aaccaaccct aggaataagg       180
     gggagcggcg agggggcagc tagccacccw tttttcccgc ctctcgcaac tattacttgc       240
     gtgggtgaga aaaaattgcc aaatttctcc actttccttc caccgcgttg cagcaacaaa       300
     ttccaacagc tgtgatcgca gtgttgatsa gcgccaaaag ctcagtcgga gccgccctgg       360
     caggtggcgc cactctgcag cctcgcttga accgggaaaa agcgccactc ttttttcccg       420
     cgaatttcaa aaaattcaaa tacaaacgag gcgctggcgc caaaattgtt gtttgagaga       480
     tggagcgtta tgtcctgtca atggaccacc aagcccgctg cgatgacgca ttggggcaag       540
     atgcgcaaag tttggatgcg gcatttgcta agcggccaaa aattagcggt caccgcctgg       600
     caaggccatt cacgtggaga ctgagaagtt ggcgattcac gctaatcgat ctggaacggc       660
     tggaacaccg gcaatagctc ccagcagccc ggagacttcc gtttctccag aagttgtatc       720
     taatgtggca gagctagatg agctgggatc gctcatctgg gaaatggaca cgatgttcaa       780
     taaaggagat gatggcaaaa aaccagtacg ccacataaat ctcggcacca agaacgcaat       840
     agtacgaatg aaggagctac acgaagcgat atgccacata atgatgggca gcaaatcggt       900
     ggtaaaggcg gcaaggagcg aaatcgccac ccaaacttcg cctctgaatg ctagacagcc       960
     cagaaatgat gcgaaamaga tagatttggc aggaaacacc cccaaacgcc agagagagga      1020
     cgccattgtc cagcgcaata ccccaccaaa gcgacagcga gcaatggcgc agaacaccgc      1080
     acgtcgcgat ccggagccag gtactctgca gaaagtcagc acgccagagc cgcaggcagc      1140
     ccatggagct gcggaatggc aaactgtatc acgaaagaga gtgaacaagc catctctgag      1200
     gaaagccaga ccggaggtga tcctaatcaa agcaaatgag ggctgcacat atgccgaaat      1260
     cctgagccta gtcaccagaa ggccagacgg caagctcgac gacgtcaaaa atagcgtcaa      1320
     gaggactaga aaaacggcta caggcgattt acttcttgaa ctcaagggtg gtggaaaggc      1380
     caacagcaaa aaattgaccg aggatttgag ccaggtcctg ggccaacaag cgtcagttcg      1440
     agcagctgga gcagaggcgt ggcttgaaat gcgcaacctc gacaacttag cgacagaaga      1500
     ggaaataaaa aagtcaatgm aactgaaaat tggcgatgac gccgagcaag tgaatataag      1560
     gggcttgcgc aagtccttta gaggcaaaca gatggccatt ttaagtatgc cgcgtactat      1620
     agcagccaaa ctactaaaag aaggctttat agaagttggc tgggacatgt gtccgattcg      1680
     cgagaggcat gcccaaaaaa gatgctacaa gtgtctatgc ttcgggcaca aagcagaaaa      1740
     ttgcactagt gccaaagacc gcacaaactg gtgccttaga tgcggacaga ccgagcacaa      1800
     agcagccaca tgcaacaata agccagtttg ctttaactgc gtagacgcaa aacgcacgga      1860
     tgcgagccac tacactggta gtcgtcgttg cccgctggca accacaggtg agcaagacgc      1920
     cagcaagaaa tgatgaagat cctacaacta aatctaaatc actgcggggc ggcgcaagat      1980
     ctactggcgc aaactatacg cgagctaaac gtagatgtag cagtactaag cgagccttac      2040
     aagactcaaa ctggatgttt ttgggctgcg gatagaacgt ctaaggctgc catatgggcc      2100
     tgcagtaaca gagcgccggc cgcagaggct gtatactcct ctgacggtta tgtgtgcgca      2160
     aaactaggcg atatttggct atacagctgc tacctaccac ctagcctccg tttggaagag      2220
     tttgaaagta gactcgacaa cctcgctgcg cacgcaaggg gtaaaagaaa agtcgttatt      2280
     gctggagact ttaatgcatg gtcccacgaa tggggaagca gctcaacaaa tgcacgagga      2340
     cgcagcctgc tggaagcttt tgccatacta gatctggcga ttctaaatac tggtacaagc      2400
     tacactttta ccagagcgga ctacgggtca gtgattgatg tgacttttgc cagcagccag      2460
     attgcaagcg ccatacagtg ggagctaagc agccactaca ctgccagcga ccacatggcc      2520
     attatttgta atattggcag tcgagcccaa caaacagcgg tacaagaaaa acgcaaaatg      2580
     tacagaattg atgcactaaa ctctgaagta ttcgcatcat cactagcgat cccagaacta      2640
     actggagatg ccaacaagca ggcagaaatg atcatggaat ctgtagttgc agcttgcgat      2700
     tgcagcatgc ccatccgcag ggctcatagc agacaccatc cccatgtata ctggtggacc      2760
     aacaatatcg ccgaggcccg gaaaaaatgc ctgcgcgcaa ggcgcgccta ccaaagagcg      2820
     cggggcagca tcacctattc acatctcggg gatgaatttg caagcagacg ccgcgaacta      2880
     aaacgcgcta taaaagaaag caaacgccgt tgtttcctac agctatgcga tgaagcgtcg      2940
     agcgacattt ggggcatggc gtataaaatg accgttaaaa agctgaaagc agtcagaccc      3000
     gctgcaccaa gcgagggcca catggtgaac atagtgcaaa cgctctttcc cgatacctca      3060
     tatatggctc ccagggaaat gctgcaaatg gatcacactg atcacataag tgtcagcaca      3120
     gatgagctgc tagcggctgc tgcacaaatg catgaccaaa aagcgcccgg tccggacgcg      3180
     attcccaaca aagcgctcaa actagcagtg cgactccagc ctgaaaagtt tacccargtg      3240
     tactccaaat gctttgagga atgcattttc ccagacattt ggaaagagca agatctagtg      3300
     ctaataccaa agccaaacaa gccgcaagat gacccgtctg catacagacc actctgcatg      3360
     ctagactctg cagccaaact gctagaaaaa ctaatctgca caagactgga gagggcgatt      3420
     gctgtagcgg gtaatctctc gccgatgcaa ttcgggtttc gcaaggctaa atcaacaata      3480
     cacgcattgg caacagttgt tgaaatagcg agaaaatcaa ttgagggaca gcgatggaaa      3540
     aacggtaata aaaaatactg cttagtaacc acacttgatg tgaagaacgc gttcaacaca      3600
     gctaactgga gccgcatcat cgaggcgcta agcatgttcc atgtgccggt cccgcttatt      3660
     gccttaataa aggattactt ccgaaatcgc aagctacgat atagcacaag gagtggcgat      3720
     cgaattcacg aagtacgagg tggagttcca cagggctcgg tacttggccc gatactgtgg      3780
     aatgctatgt atgacggcat tttacgaata agcctcccga ctgactgcca tatcatcggt      3840
     tttgcagatg acgtggctct cgtagtcgtg gcaaagcagc tctcagaagc agaagaaaag      3900
     acggtcacat cgattgccat agcaaaacag tggcttgcga acgcaggact agaactcgca      3960
     gatcaaaaaa cggaagcagt tcttatcagc agcaggaaaa cggtggagca ggcaaaaatt      4020
     gtgctagaca catgcacaat ccgctcggct agagcaatcc ggtacttagg tgttttcttg      4080
     gatacacgcc tctgtttccg ggaacacttg gggcacgcga gtgcaagagc ggctgaactg      4140
     ggaagatccc tgagccgaat catgctcaac acaagaggcc cgggacaatc tcaacgatta      4200
     ttactgatga acgtcgtcag gtcgaccatg ctctacggcg cgccagtatg ggcggatgcg      4260
     atggagacga agtcatacag acgaggatta gaggcaacat accgtcttgg ggctcttcgc      4320
     gtatgccgtg gcttccgcac aatttcggat gacgcggctc ttgtaatatc aagtatggtc      4380
     ccaatagacc tactagctaa agaagcgcaa aacattttta gaagtcggca gagtgcggaa      4440
     tggttaccac cagccagaag ggaggcaact gcagaagcca ggcgatcaag cctagcagaa      4500
     tggcaatcac gctgggcagc atcgcagaag ggcagatgga cattcaaact tatcccggat      4560
     ttacatacat gggtaaacag gcgacatggc gaagtcacct tcgaactgac ccagctcctt      4620
     agcggccatg gatgtttcag gtcataccta ttccgatttg gacacgagtc cagtgcggaa      4680
     tgcaccctgt gtagacaagg catacaagaa agccctgaac atgtgatctt ttactgcatg      4740
     aggtttacca acgagaggca aaggctaacg gcagtccttg gagaagagcc cacacctttc      4800
     aacctggtaa acattatgat cacatcgcaa tcggcgtggt cggcggtgtg cacatatgct      4860
     gcagcaacaa taaggacgct acgagagctg gagagagagc gcaatacctg aggggcatcg      4920
     ccagcccact atagacctgc gaagcaatac cacaaggcag tcccgcagga tccctatagt      4980
     aaaattcttt tccttccctt tacttctctt gtctatactt ctgctttttg tatataactt      5040
     tcttttcctg tttatattta accatatacc aataaatgaa ttaaaaaaaa aaaaaaa         5097
//
ID   R1-13_PPo   repbase;    DNA;    INV; 659 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-13_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-659
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3143-3143 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..375
FT                 /product="R1-13_PPo_1p"
FT                 /translation="KRQLRLDSLDEWNRRXKEGITXSTTRVPDAINAYPTX
FT                 RKLELDPVLVQVLTGHGGFGGYLHKFRCKTNPSCICDLGRLRAEVETKMKE
FT                 KIVLENLNKLINNKKTRDIFVNFSKEIAKKVIKRNKV"
XX
SQ   Sequence 659 BP; 239 A; 100 C; 142 G; 172 T; 6 other;
     aagcgacaac tccgtctgga ctcgcttgac gaatggaaca ggcgctamaa agagggaatc        60
     acgscctcga caacgagggt scctgacgcc ataaacgcct acccgacacw tcgcaagttg       120
     gagttggacc ccgtgctggt tcaagtttta actggtcacg gggggttcgg tgggtacttg       180
     cacaagttta ggtgcaagac gaacccctcg tgcatctgcg atctcggtag attgagagca       240
     gaagtagaaa ctaagatgaa agaaaaaata gtgttagaaa acttgaataa actaataaac       300
     aacaagaaaa caagagatat ttttgtaaat tttagtaaag agatagcgaa gaaagtgata       360
     aaaagaaaca aagtgtaaaa accgaatact ggacatattt taacaactgt acataggtat       420
     atattttaaa atgtagtcat aattataatc tagtcctagt agtaatagta acttattgtt       480
     tttttttaat gttttttaat tgtaaatagg taagaatttt aaaatgtatt aatgattgta       540
     ttattttata ttggaactgt aagtattgtw tttkaaataa aataaagtaa acaaagtcct       600
     tggattcacc acgccagggg gagaacgacg gggcggcgaa aggccgccca aaaaaaaaa        659
//
ID   R1-14_DTa   repbase;    DNA;    INV; 5432 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   17-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5432
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Direct Submission to Repbase Update (17-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A sample sequence.
XX
SQ   Sequence 5432 BP; 1285 A; 1302 C; 1596 G; 1249 T; 0 other;
     cagtcgattt tggattgctc gagtgagcag acgtgtgttt tcgtgcgctc cgttagttaa        60
     ttcaaaaaca acagtccccg gttagctaca tagctgaaac tagcaccaaa attcgtgttt       120
     attgcctgtg aaaacgtttt cggttttttc tgcatgaaaa actgtgcggt tgagtgatat       180
     ttcgcgtttt tcattttgtg aattttgttt tcatatttgc ctcatttagg catattttat       240
     ttgacagttg tctgaaaggt aattgtgact ttgctatttg tcatatattt ggtacggaaa       300
     ttggacaaag gtgtgtgact ttgataagtg gttcgagcat tggaatttca gcaaatcagc       360
     tgattgggat accagatcag caaaatagag tcggggttcc atccaatatg gatgttagcg       420
     agtctgggag tgaacatggg agcagccgca gttcagcccg tggaaggacc gtgcgcgcta       480
     ggggaaaacg cagtatgggg ccgccgagag atgcatcacg ggcaaaggtt ccagctattg       540
     gtgggacaaa ggacacgcca gtgtctttag atgaagaaaa tgagccatta tggatggaga       600
     tgccgagtgc tgctgcgatt gccgcaagtt cagctgaccc tgtgaatgct gctctgaacg       660
     ccgctgaaaa cgccgctgcg actattgacg ccccagatac tgcacccatt gttaccccag       720
     atattccggt agtctccatc atggagaagg taaagatggg aagcggtgcc atagcacgag       780
     aattggcgga catccggacc tcgttcgcga aagtattggt tgcctcgacg accagctcaa       840
     aactggctgg aaaaatccag aataatttca acaggtatga ggagattatc agtgctatga       900
     tgattcacat tggagtcctc gaggatcgtg caagcagaca accaacgcca acaccggtcg       960
     tctcggctgc ctcctatgca actactgctg caagaggcgc gcatcttgtt ggccaacctg      1020
     ctccccccgt agccgcacca cggagcgtga acattcgcga aacgtggtca gcggtcgttg      1080
     ccggcgacga tcccaccctc tcgggaaggc agattgcgga caaaatccgc aaggaggttg      1140
     cgcccgccct gggcgttagg gttcatgagg tgcgtgagct gaagagaggc ggtgctatta      1200
     ttcgcacgcc atctcgagca gaaatgacca aagttgtcgc atctgcaaag ttcgctgagg      1260
     tgggccttaa ggtgtcgagg aatccgatta taaaacctcg ggtgattgtg caagacgttg      1320
     acaccaccat aggacacgag gaatttatgc tggaactcaa agagaaaaac tttgaggatt      1380
     ggtcgatgaa gcagtttcag aaagcggtgg ttttgaccac aaagccctgg tctactgcca      1440
     acggtgccac aattaacgtg acactggaag tagacgacca ggcgctgagc cttctagatg      1500
     gtggcagagt ttacatcaag tggttctctt atcgctgtcg gcggcaagtg cgcacctacg      1560
     cttgccataa ttgcctggga ttcgaccaca agattgacaa ctgcaggtat acgaagcagg      1620
     tctgccgtca gtgcggacag gatggccaca aagcggtaca atgttgtaac ccggtggatt      1680
     gccgtaactg ccggcataaa gggcttccct caggacatta tatgctctcg ggaggttgcc      1740
     cgatatacgg cgcggtgata gcaagggtgc aagctagaca ttaatatgtt cagcttcatc      1800
     caagcaaatt gtggcaaagg ccgttgcgct ttcatcgagc ttgccaagca ggtgagagat      1860
     gctggccacc tgttcgcact agtccaggag ccctacgtgg acacagctgg aagaatgact      1920
     ggactccctg gagggatgag ggtcttcgca gacaagagga ggaaagccgc aatcatagtg      1980
     gatgatgcaa atgccatctg catgcccatc gagagcctga cgacggagta cggagtgtgc      2040
     gtgagtgtca cgggaagata cggcactatc tttctggcct ccgcatactg ccggcataga      2100
     gctgctctgg agccctacac cgactacctg gattcggtcc tgctgctggc cagcacgaca      2160
     ccgacaatcc ttggaataga tgctaacgcc gtgtccccca tgtggtttag taaatctcca      2220
     cccaactctg gagatagtca tcgtcgcgaa cggggacagc acttgaccga gtggatcatt      2280
     gcaagcggtg cctgtgtgct caacacagcc agccaggtgt tcacgttcga taatattcgc      2340
     tccagtagtg atatcgacgt gaccttcgcc aacgacgcag cgcgagcatg ggctatgttc      2400
     gaatggagag tcgacttctg ggatctcagt gaccacaaca ttatcactgt tgaggttact      2460
     ccagatccca atagggccgt tgagagccta gctccggtac cgcaatggag actctccaat      2520
     gtaagttggc gaagattcgg tgaggagcta aggagtgcag caagaggtct cgaggaactg      2580
     gaggaatcgc cgttggacga acgagtgtct gccctccgct ctaccgtaca ggacgtgtgc      2640
     gacagagtga tggggcgcag gatgcctgca gaaaggagaa aagtaatatg gtggaatcct      2700
     gaactgagta ccaaacgcca agaggttcgg agactgaggc ggaggctgca ggaagctcgt      2760
     cggagtggta ccgatgatgc tgtgcaactt gttgctggtc tgaggcttgc ttcagcccag      2820
     tacaagaagc ttatcctgac gacaaaggag caaaactggc gggacttcgt gggacggcac      2880
     aaagatgatc catgggggca cgtctaccga atatgccgag gccggaagaa gacaaccgat      2940
     ctcggatgtc ttcggtcgaa cggcgcgctt atcgtaaatt ggctcgactg cgcaaacgtg      3000
     cttcttcgcc acttctttcc agttgcggag tcgactgcac gcgtggacgt acaccctggt      3060
     gccccgccaa ttctcgaatc cttcgaggtg gcgacctgcg tctccaggct gaaaagtcgg      3120
     agatctccgg gtatggatgg catcacgggt ggcatcgtca aggaggtatg gcgtgccatt      3180
     ccggagcacc tgacgtcgct gtactctcga tgcctctcgg aaggatactt ccctgacgag      3240
     tggaagcacc cgagagtgat accgctggta aaggggcctg ataaggacag gagcgatcct      3300
     tcgtcctatc gtggcatatg ccttttgcca gtgttcggaa aggtgctcga aggactcatg      3360
     gtgaatcgac tcaaggatgt gctaccggat ggctgcagat ggcaatttgg atttcggcct      3420
     ggacgctgcg tggaggatgc ctggaggcat gccacaacca cagttgacaa caccacgtcg      3480
     caatacgtcc ttggaatttt tgtcgatttc aagggagcat tcgacaatgt ggagtggagc      3540
     gcagtgctcg atcggcttgt cgacgtcggc tgtcgtgaga taagcttgtg gaaaagctac      3600
     ttctccggcc gaagggcaag catcatcagc aggtatgaag cagccacagt ctcggttaca      3660
     cggggctgcc cgcaagggtc cattagtggt ccattcattt ggaaccttct gatggatgtg      3720
     ctgcttcagc gcctagagcc acattgtgct gtgagcgcgt atgcagatga cttgctactt      3780
     ttcgttgacg ggaattcccg tgctgatctg gagcgaaaag gcgagcagtt gatgagcatc      3840
     gtgggagcct ggggatctga agttggagtg agcgtgtcca ccagcaagac ggcaatcatg      3900
     ttgctgaaag ggaagctttc gcaacgaagg agaccaacgg tgcgttttgc tggagcaagc      3960
     ctaccgtatg tcgaaaaata ccggtacctg ggcatcttag tcggcgagcg gttgagtttc      4020
     ctcccgcata tctcggcaat tcgagatcgg ctgactggag tcgccgcggg gctagcacgg      4080
     gtgcttcgag tcgattgggg actcagttcc cgcgcaaaga ggaccatata taggggactc      4140
     atgatgccat gtgcactctt tggtgcctcg gtctggtaca aggcggtgag taggggtaaa      4200
     tccctaaaac tcctcacctc gtgccagagg accatccttt tgggatgcct accggtatgc      4260
     cgcacagtgt ccaccgtggc actgcaggtg cttgctggtg ctcctccaat ggatcttgac      4320
     gctcatcggt ctgctttgaa gttcaaacta cggaaggaaa tccccctgga taccaacgac      4380
     tggctgcatg gactggatat gaccgggatg aactggaagg acaagatggc tctgctagac      4440
     gagcgtctgc taaatgagtg gcagctcaga tgggatagcg cggatcacgg gcatgtgact      4500
     cgcgaattct tcccagaggc agcgtttgtc tacaagagga aagactttgt ctttactcta      4560
     aaagccggat tcttactgac aggacacggg tcgctaaacg cattcttgca cggcaggact      4620
     ctcagcacca cgaccgcatg ctcatgtggg gaggttgacg agagctggct tcacgtgtta      4680
     tgtgaatgcc ggctgtacaa tgaattgcgt gacctcgatg ctctcggaat tgtccaggac      4740
     caaggaagat ggatcgtcgc gggagtagta gagaccccag aacggatgcg tctcctagaa      4800
     gttttcgcgg atgctgcctt tttaaggcga aggatggcta cgacggatgg aaggcgaacc      4860
     acaggcgctg ggctctagcc caactcaccc ctgctgtgtg gctagcggcg aagaattcta      4920
     ccacagcttg tcatagcttg tcgtaggagg cgactaatat ggcatgggtg ccccatccga      4980
     gcttgtcgga gcttaagggg tgaggcctac cgagcctgta atttcggtac cacgggttga      5040
     gcagttccaa ggctgctcat tgaggtcggc cccctagtgg gagtatcgtg gtggctgtgg      5100
     ttgacaccca tatcgcgggt agagccttcg ggctcgacgt ggagttgcgt catacaactc      5160
     gggtgctgtg acccaaagat cagtagggat ttagatagat cctgctcctc agcaaggggg      5220
     aatgcttgcc cgacaagtaa gcattcaaat tgctaccggg gtggttgcta tgtacatagc      5280
     tatagcttct agtccggggc gttggtctgg cgcttaacct agacacattg cactatacac      5340
     tcacttgtgg gtgtataaga gtgccgtggt tgtaatccct tcagtgtgga acacgccacg      5400
     ttaaataagc ttcggaggga tccgatggac ac                                    5432
//
ID   R1-14_DWi   repbase;    DNA;    INV; 4471 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-14_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4471
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1975-1975 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           88..1341
FT                 /product="R1-14_DWi_1p"
FT                 /translation="MLRSPPPQSRAAVAPKSNSPMVRPVTAEADVANSSAR
FT                 ANGSIVALQSGLVAASPAATTTLSAGAHTSILHAPAKRVRKEAGSPGGNFP
FT                 KRAKSRQQRGATIDDEIEEMGSLLQHIIEATSPXSEAKKXSDEEKXVXDAS
FT                 KGEVKRQRHINDKLRRQFLRLKVLHDRVALPKKRPAAILVQSKGGMSYSDM
FT                 LKLVTXSQDAKLQAVGXSVQKVRRTAKGDLLLELNQVGAENVSKIQQDIDT
FT                 ALEGQVEAKSLANLVRLDVLEMDEEATKAEICHAVLMQLSLKVTEDDIKSL
FT                 RPSYGGSQKAILCLPANVAEPILKAGQLKIGYSVCRVRLNQDATRCYRCLA
FT                 FGHVAARCQDPIDRTNWCLKCGSKDHKIRDCANNANCCLCAARGVTERAHI
FT                 AGSLRCPSANASGQEKPAPRKRYV"
FT   CDS           1298..4324
FT                 /product="R1-14_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQAGKRSRPHENAMFNFIQLNLNHCEAAHELLKQRVR
FT                 ETRSDVAIISELFRRMSAENWICSNSGKAVLWACGSPNVQLRSRLAGGHFV
FT                 RALINGKWIYSCYFPPSLDYLDFCESLDELAADARAHSPFVIAGDFNAWAQ
FT                 EWGSSITNARGRAVLESLASLDVALLNCGSRNTFNSAGRGSIIDLTFVSNS
FT                 LARFAAWRLDDNYTASDHEAIIFSLGQAARPQQTRTQAVELPYKADTLNTQ
FT                 AFTAAIYDATLAAGSAQGMADQLCGMLASACDASMARSRPFNKHHQPVFWW
FT                 NDEIGDLRRACLTARRRYQRARKRLDVNWPQMHSTFSQARKSLKKAILAAK
FT                 KEVFLNLCDSAEHDPWGKAYKLVVKRIHANRQSAPTGAADLKKIVDALFPS
FT                 RSNLFSASPIAPARLSTIDAVSTEEILVAAKSLKPGKAPGPDLFPNRAVKL
FT                 AMTLRPEAFVETFXKCLLEGVFPSQWKVQKLVLLPKPGQPPDVASSYRPIC
FT                 LIDTVGKVLEGLINTRLNDLISRSNGLSENQFGFRKARSTIDAISKVVNIA
FT                 ANAIEGSRWKGGSKKYCLVVTIDVKNAFNTADWGCILGSVCRLEAPVYLQA
FT                 IIRSYFDGRVLRFNTDEGCDSRHISAGVPQGSVLGPLLWNIMYDGILRIPL
FT                 PQGCETIGYADDVALVIVAKDLATTEAFASCAIEKITNWLHSVGLSLAVLK
FT                 TEAVLISSRKTVEVARILXERSAIASKRAIRYLGVWIDTRLCFREHLNHVH
FT                 TKAASTGQALPRIMLNTRGPKQERRLLLASVLKSVILYSAQVWSQAIHVPS
FT                 YSKGIKATYRLCALRVCSAFRTVSEDAALVIAGMIPIDLLADEAKAIAVAV
FT                 SRGTPKKEASSEAXXRSLVTWQRRWDASSKGRWTHLLIPNVTEWTERKHGQ
FT                 VSFQLTQLLSGHGCCRSYLHRFGHEHVPFCLVCGSSTVEDARHILFECVRF
FT                 NNERQRVADLINTALTPDNLVTAMLAKSAIWDAVCGFAGVVCQVLRQEERA
FT                 RNG"
XX
SQ   Sequence 4471 BP; 1224 A; 1100 C; 1186 G; 945 T; 16 other;
     ttattctgta cttgccacac cccccttgtc aattttttcg accttgaaga caatacaggc        60
     gaggttgctc agccacagtg tggagcgatg ttacgctccc cgccgccaca gagcagagca       120
     gctgttgccc caaagagcaa ctctcccatg gtgcgacctg tcacagcaga agctgatgtc       180
     gccaatagca gcgcaagagc aaatggatcg attgtggcac tgcagagcgg cttagtagca       240
     gcgtcaccgg cggctacgac aactctgtcg gcaggcgccc atacgagtat tttgcatgcc       300
     ccagcaaagc gagtcagaaa ggaggcaggt tccccaggcg gaaattttcc gaaaagagcc       360
     aagtcaaggc aacagcgtgg cgccacgatt gatgatgaaa tcgaggaaat gggatccctg       420
     ttgcagcata taatcgaagc caccagcccn ttsagcgagg caaagaaana ctccgatgag       480
     gagaaasaag tkknagacgc ctctaagggc gaggtaaagc ggcaacgtca tataaatgac       540
     aaactaaggc gtcagttcct taggctaaag gtgttgcatg accgtgtagc acttccgaaa       600
     aagcggcccg ccgctattct ggtacaaagc aagggcggca tgtcatacag cgatatgttg       660
     aagctggtga ccagnagcca ggatgcaaag ttgcaggctg ttggcganag cgtncaaaag       720
     gtgaggcgta ccgcaaaagg cgatctcttg ctagagttaa accaagtcgg cgctgaaaat       780
     gtcagcaaga tacagcagga catcgacaca gctcttgaag gccaagtcga ggctaaatcg       840
     ttggcaaatc ttgtcagatt ggacgtgttg gaaatggatg aagaggccac caaagcagaa       900
     atatgccatg cagtattgat gcagctaagt ctaaaggtga cagaggatga tatcaaaagc       960
     ttgcgtcctt cctatggcgg atcccaaaag gcaattctat gccttccggc aaacgtggca      1020
     gaaccaattt tgaaagcggg gcagctaaag atcggctact cagtatgcag agttagactc      1080
     aaccaggacg caaccagatg ctacagatgc ctggcatttg ggcacgtagc ggctcgatgt      1140
     caagacccga ttgacaggac gaattggtgt ttaaaatgtg gcagcaagga ccacaaaata      1200
     agagactgcg caaataatgc caactgttgc ctatgcgcag ccagaggtgt caccgagcgg      1260
     gcacatatag ctggcagcct taggtgtcca tccgcaaatg caagcgggca agagaagccg      1320
     gccccacgaa aacgctatgt ttaattttat ccaattaaac ttgaatcact gcgaagcggc      1380
     tcacgagctg ctgaagcagc gggtgcgcga aacgaggtct gacgtggcaa tcataagtga      1440
     gctttttcgt aggatgtctg ctgagaattg gatatgcagt aattccggca aggccgtgct      1500
     ttgggcatgt ggcagtccca atgtacaact gcgttcgagg ctagcaggcg ggcattttgt      1560
     cagagcctta ataaacggca agtggatcta cagctgctat ttcccgccta gtctagacta      1620
     tctggacttc tgcgaatcgc tggacgaact agcggcggac gcgagagcgc acagcccgtt      1680
     cgtaatagct ggagacttca atgcgtgggc ccaagaatgg ggcagcagca taacaaatgc      1740
     tcgcgggcgc gccgttctag agtcgctagc ctcattagac gtcgcacttc taaactgcgg      1800
     ctctcgcaac acgttcaaca gcgcaggcag aggatcaata atcgacctta ccttcgtcag      1860
     caacagcttg gcgagatttg ctgcatggcg gctggatgac aactacacag ccagcgacca      1920
     tgaggccatc attttttccc ttggacaggc agctcgacca caacagacgc gtacccaggc      1980
     agtggaatta ccatataaag ctgacacgct taacacccag gcatttacag ctgcaattta      2040
     cgatgcgacg ctggctgcgg gatctgctca aggcatggca gaccagctat gtggcatgct      2100
     ggcatcagcc tgcgatgcga gtatggcccg ctccagacca ttcaataaac atcaccaacc      2160
     agtcttctgg tggaatgatg aaattggaga tctacgaagg gcttgcctaa ccgcaagaag      2220
     gcgttaccaa agggcaagga agcggctgga cgtaaactgg ccacagatgc actccacttt      2280
     tagccaagcg agaaaatccc tnaagaaggc catccttgca gccaaaaaag aggttttcct      2340
     caatctgtgt gactcagctg agcacgaccc ctggggtaag gcctataaac tagtagtaaa      2400
     acgtatccat gcaaaccggc aatccgcgcc aacaggtgcc gcagacctca aaaaaatagt      2460
     cgacgctctc tttccaagcc gatcgaacct ttttagcgca tcgcccatcg cacctgcaag      2520
     gctttctacc atcgatgcag tctccacaga agaaatttta gtcgcagcca aatcgcttaa      2580
     gcccggtaag gccccaggcc cggatttatt cccgaatcgt gcagtcaaac tggctatgac      2640
     gctacgccca gaagcatttg ttgaaacctt taawaaatgc ttattggagg gagtttttcc      2700
     atcgcagtgg aaagttcaaa aactggtatt gctgccaaag ccggggcagc cacctgacgt      2760
     agcatcctcc tacaggccga tttgtctaat agacacagtc ggcaaagtcc tggaaggact      2820
     aatcaacact aggttaaacg atctaatcag caggagcaat ggcctctcgg aaaaccaatt      2880
     cggctttcgg aaggcaaggt cgacgataga tgcaatcagc aaagtagtta atattgctgc      2940
     aaatgcaatc gagggctccc ggtggaaggg cggctctaaa aaatactgcc tggtcgtcac      3000
     aatagacgtt aagaacgcct tcaacacagc ggactggggc tgcatcctgg gstcggtgtg      3060
     taggctggaa gcgccggtat acctgcaagc catcatacgg agttattttg atgggagagt      3120
     gctgcgattc aacacagatg agggctgcga cagtcgccac atttctgccg gggttccaca      3180
     agggtccgta ttgggcccgc tactgtggaa cataatgtac gacggcattc tgaggatccc      3240
     tctaccacaa ggatgcgaaa ccatcggata cgcagatgac gtggcgttag tgatcgtagc      3300
     caaggatctt gcgacgactg aagcgtttgc atcctgcgcg attgaaaaaa ttacgaactg      3360
     gcttcactca gtcggtctct cactggcagt gctaaaaacg gaggcggtgc ttattagtag      3420
     taggaagaca gtggaagttg ctaggatact agwagagaga tctgcgattg cctcaaagcg      3480
     ggctatacgt tacctgggcg tatggataga cactcgtcta tgctttcggg aacatctgaa      3540
     tcacgtacat accaaggcgg cgagtactgg gcaggccttg ccccgaatca tgttaaatac      3600
     cagaggcccg aaacaggagc gcaggctgct gctagcgagt gtgctaaagt cagtgatatt      3660
     gtattcagcg caagtatggt cgcaagctat tcacgtcccg tcatacagca aaggcattaa      3720
     agccacatat cgtctatgcg cacttcgagt gtgcagcgct ttcaggaccg tttcggagga      3780
     cgctgcgttg gtaattgcgg gtatgatccc aatcgaccta cttgccgatg aagccaaggc      3840
     gatcgccgta gctgtcagcc gcggcacacc caaaaaagag gccagctctg aggcgagwaw      3900
     tcggagtctt gtgacttggc aaagacgctg ggatgcctct agcaagggaa ggtggacgca      3960
     tctcctcatc ccaaacgtaa cggagtggac ggagagaaaa catgggcaag tttccttcca      4020
     actcacacaa ctgctttcag gtcacggatg ctgcagatca tatctgcacc ggtttgggca      4080
     tgagcatgta cccttttgct tggtctgcgg cagcagcaca gtcgaagacg caagacatat      4140
     cttgtttgaa tgcgtcaggt tcaacaacga gcgacaaagg gtggcagacc tgatcaacac      4200
     tgcccttaca cctgacaact tggtcacagc tatgctggcc aaatcggcga tctgggacgc      4260
     agtatgcggc tttgcgggtg tggtctgtca agtcctcaga caagaggaac gcgcaagaaa      4320
     cggataagta tgctagcaac acgtttttgc gaagcaattc cccctgggac gtcccgcaaa      4380
     aattgtttcg tattatgcct gcagtccgat agaaaacatt gtatattctt atgttattgt      4440
     ttttatgtta taaataaagg aattaaaaaa a                                     4471
//
ID   R1-14_PPo   repbase;    DNA;    INV; 302 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-14_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-302
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3144-3144 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 302 BP; 72 A; 75 C; 95 G; 59 T; 1 other;
     gagggacgag gggaggtccr catccagtaa gagatggaga gggcgcgcac gggttcccgc        60
     gcacaacaga ggctgaacga tcgttgagga ggtccacaac catcaccatc ggggtgtgtg       120
     atgaatatta acatgtgccc atgccccggt gaacggtgaa gtcgagggaa ccagaggggg       180
     tttagtgggt aggctccacg ttccttccct tttgggcagg aatgtggaga gagtcccaca       240
     taccctgtgt gtctttcccc aaggcacctg ggatgcgtaa cgcattcccc ctcttaaaaa       300
     aa                                                                      302
//
ID   R1-15B_PPo  repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-15B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-200
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3145-3145 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. 5'-truncated.
XX
SQ   Sequence 200 BP; 44 A; 52 C; 72 G; 32 T; 0 other;
     ctcgggtgga caaggggaag ttcgccactc ggagtagaga gggcgcgcgg ttccccgcgc        60
     aaagggccaa accgaggagg ctacagccat caccaccggg ggtgtgagaa tacttcgtgt       120
     gcccacgccc cggtgcggtg aaacgatgga gacagggggt tttagttggt agctcccgct       180
     tatcggggga gccaacataa                                                   200
//
ID   R1-15_DWi   repbase;    DNA;    INV; 5743 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-15_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5743
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1976-1976 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~97% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           1034..2596
FT                 /product="R1-15_DWi_1p"
FT                 /translation="MLQRSPPQQGVSQNEAESQKKGANLDLNPAGTLMVAG
FT                 XNLMANXVCEESKTQPSDTPKRARGTPSPASSPETRSVPFKRVKVQPVCRE
FT                 LDEMGLVLESISMMTVKCKDGRNRSITNPLRENVAKLQRLHADLILLFQGK
FT                 GVAPEETASPGLVPPQRASREQQTDAESATASEVLPARSCHCXCECXKPPS
FT                 SATIGNXGSTSTSNNTSQAGQKSPKNSKSIPXLQRQQRHRMLPAXSVQKSD
FT                 QREDEGQISIRTSNSESSQGWQEVGPKRKTRVKEAKPRRAKPDALLIEPSS
FT                 GVSYSDVLALVTRRADEKLDHVRSHVSRLKRTAKDGLLLELGNAQSDSRGL
FT                 MDEISXVLGDSAGVKVLRKFKSAIIRNLDDIAEPCHIXQALVKHANIDAST
FT                 CTVKSMRPGYKRNTQVAIITAPDVVMQKILLLGKLEVGWNLCSIKELEELP
FT                 TRCYRCLGFGHVAXKCSSQTDRSNCCLKCGQPGHKAAKCDGSETCFLCIEA
FT                 GVDRAKIGHRAGSRLCPQLRRTGKN"
FT   CDS           2601..5567
FT                 /product="R1-15_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTPKIKVIQLNLNHCIAAQDLLHQTIREVSADIAILS
FT                 EPYRMESIGGWVSDSTNKASIWTCSALQAPLVNVRSYDGFVRAQICGSYWV
FT                 YSCYLPPSLSIARFGEVIDELVDDARGRXPVIIGGDFNAWATEWGSSHTDR
FT                 RGRLLLEALTTLNVSLLNTGSKKTFNRAGMGSIIDLTFVSDPLVRFSNWKV
FT                 CDIYSASDHEVILFSIGRSTPSHHTTVSEGAFRVDTLSIPAFCGNLLFNTS
FT                 ENSAENMANSIMHSIETACNASMTRRKLFKRPYAAVHWWCDNIAAARRACF
FT                 RARRLFQRSRGTESFESLRLEYHSKRLDLKHAIRTSKRECFLRLCDSAEHD
FT                 PWGKAYQTVVKRVDVGKTSIPSDAASLNQIVSSLFPQKQAQPPLATRSSEI
FT                 EITACTKTELLEIVNKLNNKKAPGPDGIPNRALRLAVNLHPDVFIKMYNAC
FT                 LREGTFPSRWKRQNLVLLPKPGKPPGEASSYRPICLLDTAGKILESLIARR
FT                 LNKAIEQGGGLSPNQYGLRKARSTIDAISTVVDXARDAISGNRWKGGTKQY
FT                 CXVVTLDIRNAFNSAEWSRIMGSLASFGVQGNLLHIVDSYFTNRRLRYSTV
FT                 DXSEEYSISAGVPQGXVLGPXLRAYDGVLRLNFDPGTRIIGXADDIAVVVT
FT                 EKELAAAEXKCNNAIATIGRWLAVAGLELAAHKTEAVLISSRKKVETASIE
FT                 VGGKTITSKRAIKYLGVMLDTRLCFREHLEYTCXXALXSARALARIMLNTR
FT                 GPKQERRLLLTSVTKSISLYAAPVWASALRVKSYRRGLESVFRLCAMRICS
FT                 AFRTISDDAAHVIAGLSPISDLAYEADAMYRALHSTPVVERSPLASIRQEI
FT                 RGEHVARWQQRWTESAKGRWTYCLIPDLQQWIGRSHGQVTFYLTQILSGHG
FT                 CFRAYLKRFGHEASDECTWCGAGIVEDARHIAFHCPRYEAQRRELESRIGT
FT                 RITIENLVPLMLENGRAWEAVCEFAAAVMVDNGD"
XX
SQ   Sequence 5743 BP; 1578 A; 1371 C; 1484 G; 1269 T; 41 other;
     ttctccagtg cggtcgcgtt ttgttacagc tccgtaattt atataaaaaa tcgtagttaa        60
     saggacttga ctagatccsa aaactgcgcc gagagagtct cctgcgtttt ccctgttcga       120
     tagtgatagt gckatagwaa tcgcgtccca gcaaggtgct agtagtgctt ttgttttttt       180
     ggagcwccag tggtttggtg accaattcgg gcgtagcggg gtcgcctcct acctcctgca       240
     tttgtgaggg tgaggtgaac gtagctactc ttgtaagcat ctctccacat tcctccacca       300
     gctgattggc agacctgccg gaccacccaa acaacatagg gccccgcatg ttaacagctg       360
     cccttaaact gttaacttgt agcctagatc cctaccagcc gagaggtaag cggagctttt       420
     atccagcata atattccccc ccttgtgcac cataacacgg aaactgtaag ggcacctgca       480
     agcaaacttc tagccgmcgc ctggttccak caccccgtgg cgccgggggt agcacctcag       540
     ttgcttaagc cgaattccct ggttcaaatc ccggcgaagg aatttgctaa aatcccctgt       600
     tggttcaatc taaatatata tattcttttt atttttaatt aataaattga tataaattta       660
     agttgagtct gcaccaaatt tgctgcattg catacagtct gtgccaagcc ggcgcgaatc       720
     cgcctctggc ggagcggtaw gaggccaagc ctaaaggatc ggtagaggta taggttcaaa       780
     tcctgkgtta cacctatatt tgttctcctt ttttttggtt tttcwtcttt tttttggttc       840
     cacttttgcc aaagtaacct tggtctactg gtcaacgctc tagttctata ctagcttgga       900
     tttaggccac cgagwcgggg cggtatatct cccagccgtc gtcaggagga aattcttggc       960
     caccggggga cttgcgtacg taggmcaagg catactggaa gctgagtacg aatcggcgtt      1020
     cgggcgacga ccgatgctgc agcggtctcc gccacagcag ggagtcagcc aaaatgaagc      1080
     agagagccaa aaaaaaggag caaatctgga tctaaatcct gccggcacac tgatggtcgc      1140
     cggtkccaat ctaatggcga accwagtctg tgaggagtcg aaaactcaac catcggacac      1200
     cccaaaaaga gcaagaggca ccccgagtcc tgccagtagc cctgaaacga ggagtgttcc      1260
     gttcaaaaga gtaaaagtgc agccagtatg cagggagcta gatgaaatgg gactcgtgct      1320
     agagtccatt tcaatgatga csgtaaaatg taaagatggg cgtaatcgtt cgataacgaa      1380
     cccgcttagg gaaaacgtgg cgaaacttca gagactgcat gcagatctga tactgctttt      1440
     ccagggcaag ggcgtcgcac cagaggagac agcaagtcca ggcttagtcc cgccgcagcg      1500
     agcaagtaga gagcagcaaa cggatgcaga aagtgcaacg gcatcggagg tacttccagc      1560
     caggagttgc cactgtmcct gtgaatgcak gaagccccca tcaagtgcta caataggaaa      1620
     cgscgggtca acttcgactt cgaataacac ctctcaggcg ggccaaaaaa gtccgaagaa      1680
     ttcgaaaagt ataccacawt tgcagcggca acagaggcat cggatgttgc cagccscttc      1740
     kgtgcaaaaa agtgatcaga gggaagatga aggtcaaatc tcaatccgga ccagcaatag      1800
     cgagtctagc caaggstggc aagaagtagg cccaaaacgt aagacccgcg taaaggaggc      1860
     caagccccga agggcaaaac cagacgccct gctgattgag ccgagctctg gagtcagcta      1920
     tagcgatgtt ctggcattgg ttacccggcg agcggatgag aagctggacc atgttcgcag      1980
     ccatgtaagc agactmaagc gtactgccaa agatgggctt ctgctggaat taggcaacgc      2040
     ccaaagcgat tcccgaggcc tgatggacga aatttccmaa gttctaggcg actcagctgg      2100
     ggtcaaagtt ctcaggaaat tcaagtccgc aattattcgg aatctggatg acatagctga      2160
     gccttgccat attatkcaag ctttagttaa acacgcgaat attgatgcat cgacgtgtac      2220
     ggtgaagagt atgcgaccgg gatataaacg caatactcag gtggcgatca tcacagcccc      2280
     ggatgtggta atgcaaaaaa tactgctact gggtaaactg gaagtaggct ggaatctctg      2340
     cagtatcaag gaactggaag agctaccaac tcgatgctat cgatgcctgg gctttggcca      2400
     tgtagcascc aaatgcagca gccaaaccga taggtcgaac tgctgcctca aatgtggaca      2460
     gccaggccat aaggcggcaa agtgcgatgg gtcagaaact tgcttccttt gcattgaagc      2520
     aggcgtagac agggccaaaa taggccacag agctggtagt cggctatgcc ctcagttgag      2580
     gcggaccgga aaaaattaag atgacgccca aaataaaagt gatacagctg aacttgaacc      2640
     attgcattgc ggctcaagat cttttgcacc aaacaatccg cgaagtatca gcagatattg      2700
     caattctcag cgaaccatac agaatggaaa gtattggagg ctgggtctca gactcgacaa      2760
     acaaggcttc tatttggacc tgcagcgcac tccaagcacc tctggttaat gtgcgatcat      2820
     acgatggctt cgtcagagcg cagatctgcg gtagctactg ggtatatagc tgctacctac      2880
     cccccagctt atccatcgct agatttggag aggtcattga cgaactagtg gacgatgcta      2940
     ggggccgcas cccagttata attggcggcg attttaatgc atgggccacg gaatggggca      3000
     gtagtcatac agatagaaga ggccgtttgc ttcttgaggc tctgacgact ctcaacgttt      3060
     cgttactcaa cacagggtcc aagaaaacct tcaacagagc aggtatggga tcaataatag      3120
     acttgacgtt tgtaagcgat ccactggtgc gattttccaa ttggaaagta tgcgatattt      3180
     actccgcaag cgatcatgag gtaatattgt tctccattgg ccgtagtaca ccttctcacc      3240
     atactactgt gagcgaagga gcattcagag tggatacttt gagcattcct gctttctgtg      3300
     gaaacctgct gttcaacaca agtgaaaaca gcgcagaaaa catggcgaac agtattatgc      3360
     atagcattga gacagcctgc aacgctagca tgacacgtcg aaaacttttt aaacgcccct      3420
     atgcggctgt acattggtgg tgcgacaata tagcggcagc cagacgagcg tgtttccgtg      3480
     cgcggcgact gtttcagcgt tcaagaggta cagaaagttt tgaatctcta aggcttgaat      3540
     accatagcaa acggctggat ctaaagcatg ctatcagaac tagcaaaaga gaatgcttcc      3600
     tgcgtctttg cgattctgcc gagcacgatc cctggggcaa ggcttaccag accgtggtca      3660
     aacgcgttga tgtcgggaaa acatcaatac catctgatgc agcgagcctg aatcaaatcg      3720
     tcagctcact tttcccacaa aaacaggccc agccaccact ggcaactcga agcagtgaga      3780
     tagaaataac agcgtgcacg aaaacagaac tgttggaaat cgtcaacaaa ctaaataata      3840
     agaaagctcc tggccccgac ggcatcccga acagagcttt aaggctggca gttaatctgc      3900
     accctgatgt gttcatcaaa atgtacaatg catgtctgag agaaggaact tttccatcca      3960
     gatggaaaag gcagaatctg gtactcctac caaaacccgg caagcctccc ggcgaagcct      4020
     catcatatag gcctatctgt cttctggaca cagcagggaa aatattggaa tcgctcatag      4080
     ctcgtaggct caacaaggct attgagcaag gaggtggact ttctcctaac caatacggnc      4140
     ttagaaaggc aagatcaacg atagacgcga taagcacagt tgtggacama gccagagacg      4200
     ccatatctgg taaccgatgg aaagggggaa ccaaacaata ctgcatkgtg gtgactctcg      4260
     acatcagaaa cgcattcaac tcggctgaat ggagtcgtat aatgggcagt ctggcttctt      4320
     tcggcgttca gggtaatctg ctgcacatag tggacagcta cttcacaaat aggcgcctcc      4380
     gatactcgac ggtggacgkc tcggaggaat atagcatctc tgctggagta ccacagggtt      4440
     sagtcctggg ccccmtcctg cgggcctacg acggagtcct cagactmaat tttgatccgg      4500
     gcacacgcat aatcggcttk gccgatgata tcgcggtggt ggtaacggaa aaggagcttg      4560
     cagcagcgga amaaaaatgc aacaacgcca ttgcaactat tggccggtgg ctggctgttg      4620
     caggtcttga attggcagcc cacaagactg aagccgtttt gattagcagc aggaagaaag      4680
     tcgagaccgc ctctatagaa gttggtggca aaactatcac atctaagagg gccatcaaat      4740
     acctaggkgt aatgctggat acacgactct gcttccgtga gcacttggag tatacgtgcm      4800
     agamggcact gngctctgcm cgcgcgctgg caaggatcat gctcaataca agaggcccca      4860
     aacaagagag aaggctgttg ttaactagcg tgacaaaatc catttccctg tacgctgccc      4920
     ccgtttgggc tagtgcgcta cgggtgaaaa gctataggcg agggctggaa tcggtcttta      4980
     gactctgcgc aatgagaatt tgcagtgcgt tccgcacaat ttcagacgat gctgcgcatg      5040
     tcatcgctgg tctgtctccg atcagcgatc tagcgtacga agcagacgcg atgtacagag      5100
     cgctacactc cacaccggtg gtcgagcgat cgcccttagc cagtatacgg caagaaatac      5160
     gaggcgaaca tgtggctcga tggcagcaac gatggacaga atctgcgaag ggccgttgga      5220
     cttactgcct tatcccagac ctacaacagt ggataggcag aagtcacggg caagttacgt      5280
     tttacctgac gcaaattctg agcggccatg gctgcttcag agcctatcta aagcgtttcg      5340
     ggcacgaggc atccgacgaa tgcacgtggt gcggagccgg cattgtcgag gacgcaaggc      5400
     acatagcttt tcactgccct cgctatgaag cacagagacg cgagttggag tccaggatcg      5460
     gcacgcgcat caccattgag aacctggtgc ctctgatgtt agaaaacggt cgcgcatggg      5520
     aggcagtgtg cgagtttgcg gcagccgtta tggtcgacaa cggcgactag agaggctgag      5580
     aagggaggat tagtttaaag gttaagttta agccggccgc tgcgaagcaa tacctcgcgg      5640
     tagtcccgca gtagcttgtt tgagtcacac cgccaataac taactatgta tatacgtgaa      5700
     gtaaatgaaa ttttgttgta aataaaaatg aatataaaaa aaa                        5743
//
ID   R1-15_PPo   repbase;    DNA;    INV; 298 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-15_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-298
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3146-3146 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 298 BP; 72 A; 79 C; 90 G; 57 T; 0 other;
     ccgtactcga gtggcgagct aaggggaagc tcgccactcc gatgagtagc agagggcgcg        60
     tggttctccg cgcaagaggg tctaaacacc gaggaggcgt aacagccagt caccaccggg       120
     gagtggaaga atacttcctg tgtgcccaca ccccggtgcc cggtgaaaag atggagacag       180
     tggggtttta gttggtatgc tcccgcttat cgggagtgag tccaacataa cctccgcgcc       240
     tttcccctct tagggcgcgg gggtatgcgt aaagcatttc cccactataa aaaaaaaa         298
//
ID   R1-16B_PPo  repbase;    DNA;    INV; 127 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-16_PPo;
KW   R1-16B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-127
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3147-3147 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated. ~78% identical to
CC   R1-16_PPo.
XX
SQ   Sequence 127 BP; 29 A; 34 C; 33 G; 31 T; 0 other;
     agatcccgcg gctccttatt atggcagttg gaggccaccg tggggtttta gtcggcgcaa        60
     atccgacata accacccttg tccctgcaag ggtggtatgc gttaggcatt tccccacgtt       120
     aaaaaaa                                                                 127
//
ID   R1-16_DWi   repbase;    DNA;    INV; 3521 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-16_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3521
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1977-1977 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~97% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           578..3367
FT                 /product="R1-16_DWi_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRRLSDPTATPYGXRARAADGKWVYSCYLPPSVSHDN
FT                 FXRALDEIVNDARSRSPXNAWXLDWGSAVTNARGRSLLEAFASLDLVLLNR
FT                 GSSFTFSRASGGSVIDLTFVSGGLFRSSSWSVGEIYTASDHEAILFTLGVT
FT                 KPRQAALPQSRVYKSDTLDVXAFAEAWATHEWTQSTAQRMADQLSSLLAAS
FT                 CNASMAVRRPFKGRQQPVFWWKSSIGDTRRTCLASRRRYQRARKRGLETWP
FT                 QLWAAYSACRKELKKAIYEAKREVYLSLCDTADQDPWGRAYKIVVKRVYAN
FT                 RFSSPTEASELERIVCDLFPQRADSLNCRRVEHVASRYHVPVTTEEVLAAA
FT                 RSLKQNKAPGPDSIPNRALRLAMATRPEIFAATFDQCLKEGVFPSQWKLQK
FT                 LVLLPKPGKPAEEASSYRPICLVDSVGKVLESLISARLSEAINEGGGLSAN
FT                 QYGFRKARSTIDAVSRVVCTAADAIKGSRWKGGAKEYCLVITLDVKNAFNT
FT                 ADWGCILDAARSFGIPSYLYEVIWSFFSGRRLVYAASTGSVQRQVSAGVPQ
FT                 GSVLGPLLWNIMYDGILRLDMPSRCQLVGYADDVAVVVVGKELKDVESTAN
FT                 TAIASIMTWLRSVGLVLAAHKTEAVLISSRKLVETATVTIDGIEVKSARAI
FT                 RYLGVWLDTRLCFREHLAEVQRKAAESSRALARIMLNTRGPKQERRMLLMS
FT                 VVKSQILYAAQIWAPAMEVDSYRRLISPTYRLCALRVCSAFRTVSEDAALV
FT                 IAGMVPIDILAAEVRVTAEATSRGIPKSVAKADARRLSLRKWQDRWDAAPN
FT                 GRWTHRLIPNIEAWVGRKHGQVNFYLTQVLSGHGCFRQYLNRFGHDHFPTC
FT                 PACPEGAIEDAHHVAFSCGRFSAERQRAERAIGQTLSVASLVPSMLESKDN
FT                 WAAVSTYFGAIMRELRRLERERVGST"
XX
SQ   Sequence 3521 BP; 862 A; 914 C; 1044 G; 686 T; 15 other;
     cgggcaggtg gckcgcgcac tgtcaaacca ggatagatgt gctggatatg gacggcgaaa        60
     ccacgaggga agagcaactg agcgtgcaaa ttgaagactc gcatataaaa agtctgcgcc       120
     cagcccgcga cggctgtcaa agcgcgtccc gtcagcagtg gccgagatca tcttgaaggt       180
     tggcaacctc aacctcggcc atgtagcagc tcgctgctcg gacccggtgg acaggacaaa       240
     ctggtgcctg agatgcggtg gcaaggaggc gaaggagtgc aggaacgcac tcaattgctg       300
     tctatgtgag gcggcgggcg aaagcaatak agcccatgcg gtcggtagcc agcgatgtcc       360
     agcaacaacg ggtgtaccac maaagttgat cgaaaagggc caccaaaatg agtagattcc       420
     ttcagctgaa tcttaaccac tgsgaggcwg cacacgacct acttgcgcaa aacattcgcg       480
     aagtcaaagc ggagcwcgca atcataggcg agcccttcag gaaaaagtcs acckkcattt       540
     gggtggccag tacctccggt aaggccgcac tctggtcatg cggcgcctct ccgatccaac       600
     tgcgacaccm tatggcwgga gagcgcgcgc agcagacgga aaatgggtct atagctgcta       660
     cctgcccccc agcgtgagcc atgataattt ctktagagcg cttgacgaga tagtcaacga       720
     cgcgcgttct cgcagcccak tcaacgcatg ggmccttgac tggggaagcg cggttaccaa       780
     cgcgagagga cgatcgcttc tggaagcttt tgcatcgctg gacttagtcc ttctgaacag       840
     agggtcgagc ttcacattca gcagagcaag cggcgggtcc gttatcgacc tcaccttcgt       900
     cagcggcggg ctatttaggt cgtcatcatg gagcgttggt gaaatctaca cggccagcga       960
     ccacgaggcg atattattca ccctaggcgt caccaaaccc cgtcaggcgg cgctgcccca      1020
     aagcagggta tacaaaagcg acactctgga cgtaagwgcc ttcgccgagg catgggcaac      1080
     acacgagtgg acccagagca cagcccagcg gatggcagac cagctatcca gcttgctggc      1140
     tgcatcgtgc aacgcgagca tggcggtaag gagacctttt aagggacgtc agcaaccggt      1200
     cttctggtgg aaaagctcaa ttggagacac acgtagaacg tgcctagcct ctaggcggcg      1260
     ttaccagaga gcaaggaagc gaggattgga gacatggccg cagctatggg cagcctatag      1320
     cgcatgcagg aaggagctga agaaggctat atatgaagcg aagcgggaag tgtacctaag      1380
     tctctgcgac acggccgatc aggacccttg gggcagggca tacaaaatcg tggtcaagag      1440
     agtctacgcc aacagattct cttcacctac tgaagccagc gagttggaac gtattgtctg      1500
     cgatcttttc ccccagcgag cggactccct aaactgtagg cgcgttgaac atgttgcttc      1560
     ccgctaccat gtaccagtta ccaccgaaga agtgcttgcg gccgccaggt cgctaaaaca      1620
     aaacaaggcc ccgggcccgg actccatccc caaccgtgca cttcggctgg caatggcaac      1680
     tcgcccagaa atattcgcgg caaccttcga ccagtgcctg aaggagggag tattcccatc      1740
     tcagtggaag ttgcaaaagc tggtgctgct ccccaagcct gggaaaccag cagaggaagc      1800
     gtcgtcatat cgtccaatct gcctcgtgga ctccgtgggt aaggtgctgg aaagcctcat      1860
     cagcgccaga ctgagcgagg cgatcaacga ggggggcggc ctatccgcca atcagtacgg      1920
     atttcgcaag gcaaggtcca caatagacgc ggtcagcaga gtagtgtgta cagcggccga      1980
     tgctattaag ggttctcgat ggaaaggagg tgcgaaggaa tactgcctag tgatcaccct      2040
     ggacgtgaag aatgccttca acacggcgga ttggggctgc attcttgatg ctgccagaag      2100
     cttcggaatt ccgtcgtacc tgtacgaggt gatatggagc ttcttttcgg ggagaaggct      2160
     ggtgtacgct gcgtctactg gatccgttca acggcaggtg tctgcaggag tgcctcaggg      2220
     ctctgttctg ggtccccttc tgtggaacat catgtacgat ggcatccttc gactagacat      2280
     gccgagtagg tgtcagctag tcggctacgc ggacgatgtc gcggtcgtag tggtgggcaa      2340
     ggaactgaag gatgtagagt caacggcaaa tacagccatt gcatccatta tgacctggct      2400
     gcgctcggtg ggcctagtac tagcggcgca taagacggaa gcggtgctaa tcagcagccg      2460
     gaagttagtg gaaacggcca ccgttactat cgacggtatt gaggtgaaat cggctagagc      2520
     aattcgatac ctaggagtgt ggctcgacac aagattgtgt ttccgagaac acctagcgga      2580
     ggtacagcgg aaggcagcgg aatcgagtag agcactcgcc aggatcatgc tcaacacaag      2640
     agggcccaaa caggagcgga gaatgttgct gatgagcgtg gtaaaatcgc aaatattgta      2700
     cgcagcccag atctgggcac cggccatgga ggtcgatagc taccgtcgcc tcatcagtcc      2760
     gacgtatcga ctctgcgctc tcagagtatg tagtgccttt aggactgttt cggaggatgc      2820
     agcattagta atcgccggca tggtgcccat cgacattctg gcagccgaag ttcgggtcac      2880
     tgcagaggcc accagcaggg gcattccgaa gagtgtcgcc aaagcagacg ctagaaggct      2940
     cagtttgagg aaatggcagg accgatggga cgctgcacca aacggcagat ggacgcaccg      3000
     cctcatcccc aacattgagg cttgggtcgg tagaaagcac gggcaggtga atttctacct      3060
     cacgcaggtg ctgagcggac acggctgctt ccgccaatac ttaaacaggt tcggccacga      3120
     ccacttccca acgtgtcctg cgtgtcctga aggagcaatc gaggacgccc accacgttgc      3180
     atttagttgc ggccgcttca gtgcggagag acagcgggcc gagcgggcga tcggccagac      3240
     cctatcggtg gccagcttgg tacccagcat gctggagagc aaggataact gggcggcggt      3300
     gagcacctac ttcggagcca taatgcggga acttaggaga ctggagcgag aaagagtcgg      3360
     ttcaacatag aagctgccac aaccctggcg aagcaattcc caatgggacg taccgccggg      3420
     cgggcatttt ttatgtatcc acgttaatcg atttcttttg tcagtctggt tgtattttgt      3480
     tgatctcttt tttttatata tgttaataaa tgaattaaaa a                          3521
//
ID   R1-16_PPo   repbase;    DNA;    INV; 284 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-16_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-284
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3148-3148 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 284 BP; 76 A; 70 C; 73 G; 65 T; 0 other;
     ctcctaatta gttacgaagt atctgggctc tcggtgcata ggatagggcc taagcaccaa        60
     taccgagact ccgagatggc cgtaaaaatg tgcaggacgg ctacattcgt agcaaagcgt       120
     tggggggtca cggtcgcgtt ccaaatggag atcccgtgac ccctcgttag cgctgtggga       180
     gaccaccgtg gggtttttag ttggtgcaag cccaacatca ctcatcttta cccctataaa       240
     gatgagtatg cgtctaggca tttccccacg ctaaaaaaaa aaaa                        284
//
ID   R1-17_DWi   repbase;    DNA;    INV; 3093 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-17_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3093
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1978-1978 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with ~99% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..647
FT                 /product="R1-17_DWi_1p"
FT                 /translation="LLAQTVRELDVDVAILSEPYRVGASSLWAADITGKAA
FT                 IWTCXKNPLLIQSVQRNNCFVRAKIDXVWLYSCYLAPSLNIREFEAVLDQL
FT                 SADVRGKTKVVVAGDFNAWSEEWXSSSTNAKGRTVLEAFATSDLVVLNTGS
FT                 EFTFNRAGYGSVIDVTFTSRQIFNTAKWELCSHYTASDHTAIMCTIGDSPA
FT                 AAAVTPDKPLCFPTMVGDAMIYLGN"
FT   CDS           670..2877
FT                 /product="R1-17_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRQQRAARRSIAGTEGLLTAGIAEARNRCLRARRCYQ
FT                 RARGKDFTSLQQEYADRRRLLNRLIKDSKRKCFLDLCNEAETDIWGMAYKL
FT                 AMKKLKAIKPAAPLEQHMEHIVKTLFPSTSTVLPRNDSPTLSEYSPVTTEE
FT                 VLLAAGHLQDNKAPGPDAIPNKAIKLAARLQPEKFADVFSKCLKECTFPEI
FT                 WKKQNLVLIPKPNKPLEDPSGYRPLCMLDAAAKMLEKIISTRLEAAISQAG
FT                 DLSPMQFGFRKAKSTLDALSTVVDIAEKAIEGQRWKGGGKKYCLITTLDVK
FT                 NAFNTANWTKIIDALGRFQVPENLIFTIEDYFRNRVLNYDTRNGVRSYEIR
FT                 GGVPQGSVLGPLLWNAMYDGILRINLPPECHIVGFADDVALVVVAKHLREA
FT                 EEKTVVSMGAAKQWLSDAGLTLADHKTEAVLVSSRKTVEVAKIELETCTIQ
FT                 SSRSIRYLGVLLDTRLSFKEHLQHVNTKAAETCRALSRIMMNARGPRQAQR
FT                 MLLMNVVKSTILYGAPVWAEAMQRKTYRRGLDSTYRLGALRVCRGFRTISD
FT                 DAALVIAGMTPLDILAKEAQMIFQQRQGQVWTPTTRRTIIKMAKEASVAEW
FT                 QHRWAGSTKGRWTHKLIPDINAWINRRHGEVTYELTQFLSGHGCYRTYLHR
FT                 FGHETSNECTWCQEDVAESPEHIIFECPRFQEERWNLAVEMGETPTVANLT
FT                 KNMMRTKRSWSAVCNYAFVTMSKLRLLERERHAGGA"
XX
SQ   Sequence 3093 BP; 912 A; 726 C; 785 G; 665 T; 5 other;
     gcttgctcgc gcaaacggtg agggaattgg atgtagatgt cgctattctt agtgagccat        60
     acagagtagg ggctagcagc ctgtgggcag cggatataac tggcaaagcg gctatttgga       120
     cctgtgkcaa aaacccactg ctcatccagt ctgtgcaacg aaacaactgt tttgtgcggg       180
     caaaaataga tgakgtatgg ctctacagtt gttatttggc accaagccta aacatwcgtg       240
     aatttgaggc tgtgctcgat caactttctg cagacgtgcg tggaaagacc aaggtagttg       300
     tcgccggcga ttttaatgct tggtctgagg aatgggscag cagctcaaca aacgcgaaag       360
     gccgcactgt actcgaagca ttcgccacct cagatctggt agtgttgaac acaggcagcg       420
     agttcacatt taacagagcg ggctacggct ctgtcatcga cgtgaccttc accagcaggc       480
     aaatttttaa cacagctaag tgggagcttt gcagccatta tacagccagc gaccatacag       540
     caatcatgtg cactattggc gacagtccag cagcagctgc agttacaccg gacaaaccat       600
     tatgctttcc aaccatggta ggagatgcta tgatctatct aggaaattaa tggccgccat       660
     cactgcagca tgcgacagca gcgtgccgca cgcaggagca tagcaggcac agaaggtctg       720
     cttactgctg gaattgctga ggccaggaat agatgcctga gggcgaggcg atgttaccag       780
     agagcccgag gaaaggactt caccagcctg cagcaggaat atgctgatcg ccgcagatta       840
     ctcaacaggc taatcaagga tagcaagcgt aagtgctttt tggacctgtg caacgaggct       900
     gaaactgaca tctggggtat ggcatacaag ctagccatga aaaagcttaa ggcgataaag       960
     ccagcagcac cgttagaaca acatatggag catatcgtta agacgctgtt cccaagtacg      1020
     tcaacggtat tgccaaggaa cgacagtccc acattaagcg aatacagccc ggtaactaca      1080
     gaggaggtgc tattggcagc agggcacctg caagacaaca aagcccctgg ccccgatgca      1140
     attcctaaca aagcaattaa gctagctgcc cgcttgcagc cggaaaaatt tgcggatgta      1200
     ttttccaaat gtctcaaaga gtgcacgttt cccgaaattt ggaaaaagca gaacctggtg      1260
     cttattccga agccgaacaa gccgcttgaa gatccttctg gctaccgacc actctgcatg      1320
     cttgacgctg cggcgaaaat gctagagaaa atcatcagca caaggctgga agccgctatc      1380
     tcacaggctg gagacctttc gcccatgcaa tttggattca gaaaggccaa atccacgctg      1440
     gatgcactat cgacagtagt cgacatagcg gagaaggcga ttgaagggca acggtggaaa      1500
     ggtggcggga aaaaatactg ccttataacc acactcgacg ttaaaaacgc ttttaatacg      1560
     gccaactgga caaaaataat tgatgcactt ggcagattcc aagtaccgga gaacctcata      1620
     ttcaccatag aggattactt ccggaatcgc gtattaaatt acgacacccg aaatggagta      1680
     cgatcctatg aaatcagggg aggcgtaccg cagggctcag tacttggccc gctcctgtgg      1740
     aacgccatgt atgatggcat actgcgcata aatttgcccc cagaatgcca catagtagga      1800
     tttgctgacg atgtagcgct agtggtcgtc gcaaaacatt tacgtgaggc ggaggagaaa      1860
     acggtggtgt ccatgggagc agcaaaacag tggctttctg atgcagggct gacactagcg      1920
     gaccacaaaa cagaggctgt ccttgtaagc agccgaaaga cggtggaagt tgccaaaatc      1980
     gaactggaaa cgtgtaccat acaatctagc agatcgataa gataccttgg tgtcttactg      2040
     gacacaagac tttcttttaa ggagcacctg caacatgtca atacaaaggc agcagaaaca      2100
     tgtagagcat tgagtcgcat aatgatgaat gcaaggggcc cacggcaagc acagagaatg      2160
     ttgcttatga acgttgtcaa atcgaccata ctctatggtg caccggtatg ggcagaagca      2220
     atgcagcgga aaacgtacag aagaggactt gactctacat accgtcttgg cgctctgcgt      2280
     gtttgccgtg gcttccggac catttccgat gacgcggcgc tagtcattgc agggatgaca      2340
     ccgcttgaca tactggcaaa agaggctcaa atgatcttcc agcaacggca gggacaagta      2400
     tggaccccca cgaccaggcg aacaatcatc aaaatggcga aagaagccag cgtggcagaa      2460
     tggcagcatc gatgggcagg ctcaacaaaa ggtcggtgga cccacaagct gatacccgat      2520
     ataaatgctt ggataaatag gcgtcatggc gaagtcacct atgagcttac gcagttcctt      2580
     agtggtcatg gctgttatag gacatatctg caccgttttg gacacgaaac cagtaatgaa      2640
     tgcacatggt gccaagaaga tgtggcggaa tcaccggaac acatcatatt cgagtgccca      2700
     aggttccagg aagagcgatg gaatctggcg gtggaaatgg gagagacacc cacagtcgcc      2760
     aatttgacaa aaaacatgat gagaacaaaa cggtcatggt cagcagtgtg caactatgca      2820
     ttcgtgacta tgagcaagct gaggctcctt gagcgagaac gtcacgctgg aggggcataa      2880
     ctgatgcccg ccattatccc tgcgacgcaa taccgcaagg cagttccgca ggattcgtat      2940
     ggcagcattt tttctctctc ctaatctctg tactcttatt tctacttata taacctatgt      3000
     tatcacctgt cctgtttatt kttaaaactt gtactactca ctacactaca tcttcacttt      3060
     ttaaataaac gaattaaaaa aaaaaaaaaa aaa                                   3093
//
ID   R1-17_PPo   repbase;    DNA;    INV; 908 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-17_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-908
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3149-3149 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated. ~8bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..528
FT                 /product="R1-17_PPo_1p"
FT                 /translation="VEGNERADVLAKQAAVGVKTKPHYDKCPVSFVKRHLR
FT                 LDSLEEWNRRYVEGETASTTKVFFPDAVGAYPVLRKIELDPVLVQVLTGHG
FT                 GFSEYLHRFKCKTSPSCMCDPARGESVLHAIIDCPVFEARRAAIEVKIGEK
FT                 IELANIRNIIRNSSARETFLEFSKYVATKLISKNKVP"
XX
SQ   Sequence 908 BP; 302 A; 148 C; 184 G; 274 T; 0 other;
     gtggaaggaa acgaaagggc ggacgtactt gccaagcaag ctgcggttgg agtaaagacc        60
     aaacctcatt atgataagtg tcctgtttca ttcgtcaagc ggcatcttcg tctggattcg       120
     cttgaggaat ggaacaggcg ctatgtcgag ggggaaacgg cctcgacaac caaggtcttc       180
     ttcccggacg ctgtgggagc ctacccggta ctccgcaaaa tcgagttgga ccccgtgctg       240
     gtgcaagtct taacaggtca cgggggcttc tccgaatact tacacagatt caagtgtaag       300
     acgagcccct catgtatgtg tgacccggca cggggtgagt ccgtgctgca cgcaataata       360
     gactgccctg tctttgaggc acgcagggca gcaattgaag tgaaaatagg agaaaagata       420
     gaattggcca atattagaaa tataattaga aattcaagtg caagggaaac gtttttagaa       480
     tttagcaaat atgtagcaac aaaattaatt agtaaaaata aagtgcctta aacctagtca       540
     tattaaaact ttagtgaatt gtaacgtagc atattaatct agtcatttta atgtatagcc       600
     aatctagtca ttctaactgt aattttatta ttttatactc attttatact tatcctatat       660
     tttattttac atttcatttg ccagatataa ttttaataat gtccataatt ttaatattgt       720
     acctgtagtc ttagtaatat ttattttaat cttaatgtat cttagcttgt gtattttaaa       780
     aaatctgtaa aaataaaatg taaaatgtat gagataaaaa tgtaatgatg tagatgaatt       840
     atatgaagca taataaaggc tctggcttcc atgctagagg aattgtataa ttaataaaaa       900
     aaaaaaaa                                                                908
//
ID   R1-18_DWi   repbase;    DNA;    INV; 1851 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-18_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1851
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1979-1979 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98% identity.
XX
SQ   Sequence 1851 BP; 460 A; 475 C; 532 G; 382 T; 2 other;
     ctgcaaggcg gtggtatcag cgcgccagaa aaagcggcgg cccgtcttgg cccatcctga        60
     gggaaacttt ctgcgcggct aggaaagcac tcaagaaggc aatccactcg agcaagcgga       120
     gctgtttcct tgacctatgc gactcggcgg aaaatgaccc atggggcagg gcatacaaaa       180
     tcgtggtcaa gcgcatttat gcctcgaagc agcgaccacc aacggatcca gaaatgctca       240
     aaggcattgt tgcaggactg ttcccccata ctggaggaga aatagtgagt cgacggatca       300
     gcagcactct ccccttcgca gtagagccta ttgagctgga ggagataggt gcggcagcaa       360
     aggggctgaa aaacggcaaa gcacccggcc cagacggaat ctcaaactgc gccataaaac       420
     ttgcgatgac agagagtcca gaactctttg ctgaagtcta cacccagtgc ctgcgagagg       480
     gctctttccc tgcaaggtgg aaaggcggct cgaagaaata ctgcctcgtc gtcacgctag       540
     acgtaaaaaa tgctttcaac acggcggaca gggggcgtat tctggatgcc cttcagtcgt       600
     tcagcgatcc tgcctacctg cgcgccatcg tgtggagcta ctttcacggc aggcgacttg       660
     tgtataggtc agacggggct cgaatcgtac aatgtttcgg ctggagtacc atccagaggc       720
     ggctgtgcct gcaggttgcg aactaatagg ataccatcat agtggtgagt aagaccatca       780
     gacaggccga tgatggggcg aactctgcca tagcgaccat catgcgttgg atgagctccg       840
     tgggcctgag cctggcagcc caaaaaaccg aagcggtgct gattagtagc cgaaagattg       900
     tagagaccgc cacaatccta atcgacggaa acacggtgca gtcagagcgt cgaccgctac       960
     ctcggagtat ggatcgacac ccgmctctgc tttagggagc acttggcgta tgtaaacgaa      1020
     aaggcatccg cgagcgtccg tgccctctca aggatcatgc cgaacacgag gggcccaaca      1080
     ggatccagga agctgctaat gacagtctgc aggtcgatca ttttatacgc ggccccaatc      1140
     tgcgcacgcg ccatgagcgt cgccggggtt tcgcatggta tcagcggcac ttgtgatcgc      1200
     cggagtggtg cctatcgacc tacaggcgaa ggagatggaa attatatcag ctacagagcg      1260
     tggatctctg gccaggcgcc gcgcgcgatc ggacgctaga gacgcaagca tcgacctgtg      1320
     gcaggctaga tgggatgcgt aggataaagg caggtggacc cacagattaa tcccgaacat      1380
     aaagaagtgg acagagagga cacgttttgg gcacgatagc tctcaatgct gtccggtctg      1440
     gcccggcgaa atagtggaag acgcgcaaca catcctgttc gtgggcagac gctttgacga      1500
     cagtaggagg gcgcttgaac tggaggcaaa cgtggaaata tgctccgaaa accttgtgga      1560
     tctgatgctg gcgagaaaga gcatgtggga ggcggtgaac agtttcgccg cgtcaacaat      1620
     ccgcgagctg cgcttagccg agcatggcag ggctggacct ggagtggcat aggaggtagc      1680
     agcaggatcc cggccgcmca agttgtcaaa gcagtgtctc ccccattttc ttcctttttc      1740
     tgtcacccac ctttttccct catatgtatt tattctttac cctatatttt gttgttagcc      1800
     ctataacgtt tttcatctct gttccattta gttgcttaat aaataaataa a               1851
//
ID   R1-1B_CoFl  repbase;    DNA;    INV; 2880 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   R1-1_CoFl; R1-1B_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-2880
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2380-2380 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. This family is inserted into (TAC)n
CC   microsatellties. The consensus of 3' terminal region is ~93%
CC   identical to that of R1-1_CoFl. It looks internally deleted
CC   derivative of R1-1_CoFl, and closely related to telomeric
CC   repeat-specific families SART.
XX
FH   Key           Location/Qualifiers
FT   CDS           938..2410
FT                 /product="R1-1B_CoFl_1p"
FT                 /translation="MKNVDAKQVPQAVTSLRESAGSSDPVKARVTDAGPTD
FT                 SGGGHKDVSHGQQGLLNVPWPFLTDKGRRGSLSSIGTNDTEDSNVSVFSHQ
FT                 TREELASLEESVTRLGVKRQQVADKVQSATNDITETLQLINDKYGNTANAV
FT                 KNGLKAALKHLQEAEVLRKGCLTEEDLYTNAWKSSFESLQWREKRRDNFRR
FT                 HVQKRTLNTALKEIERSKRNRSPSDSPEKRQQTMSSKKKKTGSGKQEEIPL
FT                 NDKTSQKKKVDATTTVVVKMAEGQTFATVLKTMKANFDPDKAKVAVQSVVT
FT                 TKKGDILIKAKGVENATAFSQQIEKSVAGQGTVKMSDRKVTLEVRDLDAIV
FT                 EEDEVKEAFARTFGHQSQEPEVALLKPNARGQRLALIKVDEASARQVEKEG
FT                 RLRVGFVSCRIRRRIEVTRCYKCLGYGHVSGNCENENRSKLCFRCGSSNHR
FT                 KKECPGPARCFLCPTTDNKHEAGSGSCPLFRRALKEARDKAQAGSK"
XX
SQ   Sequence 2880 BP; 830 A; 655 C; 806 G; 587 T; 2 other;
     cccgggtggg gttttcgcta gtttctccat accgggcgct tccccgggtg gcggataggg        60
     gcatcctctt aaaatatgag gtgacgatgg gcagctgggg tggctctctg tggtggtggt       120
     cgggggcgtg gatcgggggg cgtgtgtggc gttggcgtgt gtatctgcgg cgatgtggac       180
     gggggactag tgccccatgc ctccatcggt gtggatgcat gggccggctc tgcttgtgct       240
     ccttgttctt cgctttttgc tgcttccgtg ggtggcactc cattgcttga tgcgggccaa       300
     caaaaactag cacccgtcgt gtatagaagt aagcggcggt taaaacattc ttctcagata       360
     catgcatcac acactctcac taaacaaaca cagggacact tacggattgt tctgggttgc       420
     gtgtggcggg tccttttccg ggcttgcgtt ggaggcctgg cggcgggtga agccggatga       480
     tgaggcccgg gtaagtctgg gtaaccacat ctgatatggc tgtacgcctc ataaacaaaa       540
     aagacgtggt gggccgacta atctaggctt actaccactg aggaggctat atggcggcac       600
     cttagtgcct tacgccagcc cgttttgttg ggttgtctgc gcggtctcgg gactgtacac       660
     ctgccgctcg tctcgctggg atgaccgttg tgtaccaaca aatacataca ttacacacga       720
     acaccattct tacacttgtt actcaacgcc agggcagtct ccgcgggtgg gactgaggga       780
     gagtggcgac tcccggccgg cccgagcaag tagcggtttt ctctggtaac agagagggct       840
     gctgccctgg ttttaaccct ttccaaatac ttatttctag aaaaaaaggg tagtgctggc       900
     cttcgcgggt cagtacgaca ctaaaaaaga tgccaaaatg aaaaacgtcg atgcaaaaca       960
     agtaccccag gcggtaacct ctctgaggga atccgccggc agttccgatc cggtgaaagc      1020
     ccgggtgact gacgcaggcc ccacggattc tggggggggc cacaaagacg tgtctcatgg      1080
     ccaacaggga ctgctaaatg ttccatggcc ttttcttaca gacaaaggac gaagaggaag      1140
     cctgtcgagt ataggcacta acgacaccga ggacagcaac gtgtcggtat ttagccacca      1200
     gacccgggaa gagcttgcct ctttagaaga aagtgtcact aggctcggag taaagcgaca      1260
     gcaagttgct gataaagtcc aatcagcaac gaatgacatt acagagacgc tacaactgat      1320
     taacgataag tacggcaaca cagcgaacgc tgttaaaaat gggctcaaag cggcgcttaa      1380
     gcatcttcaa gaggcagagg tgctaagaaa aggctgtctt actgaagaag atttgtatac      1440
     caacgcttgg aagtcgtcat ttgaatccct gcagtggagg gaaaaaaggc gagataattt      1500
     ccgacggcat gtacagaaam gaaccctgaa cactgcctta aaggaaatag aacgaagtaa      1560
     aagaaacagg agcccatcgg acagccctga gaaacgccag cagactatgt cttcaaagaa      1620
     aaagaaaaca ggcagtggca aacaagaaga aattccactg aatgacaaaa caagccagaa      1680
     gaaaaaagtg gacgccacaa caacagtagt agtgaagatg gctgaaggac agacctttgc      1740
     aacggtgctg aagactatga aggcgaactt tgaccccgat aaggctaaag tggcagtcca      1800
     aagtgttgtc actacaaaaa aaggagacat acttattaag gccaaaggtg tagagaatgc      1860
     tactgcattc tcacagcaaa ttgaaaagtc ggtagccgga cagggtactg tcaaaatgag      1920
     cgacagaaaa gtgacattag aggtccgaga cctggatgcc attgtagagg aagatgaggt      1980
     caaagaggct ttcgctagga cttttggaca tcagagccag gagccagaag twgctctctt      2040
     aaagccaaat gccagaggac agaggctggc tttaataaag gtggacgaag catctgccag      2100
     acaagtagaa aaggaaggca ggttacgagt tggctttgta agctgccgaa ttcgaagaag      2160
     aatcgaagta acaagatgtt acaaatgcct gggatatgga cacgtctcgg gcaactgtga      2220
     gaacgaaaac agatccaagc tttgcttccg gtgtggaagc tcaaaccacc ggaagaaaga      2280
     gtgtccaggc ccagcacggt gcttcctttg cccaacaacg gacaacaagc acgaagcagg      2340
     cagcgggagc tgccctctat ttagaagagc cctaaaagag gccagggata aggcccaagc      2400
     aggatcaaaa taaggcaaaa aggccttgag ttgaaagaca ggcttatgtg gacccacgct      2460
     gcgctgggta ctttttacct atcagcaagg gaaagcatta agcttatagt ggtgctggct      2520
     aagtaggcgg cctactatga agcgctagac aaggtgctgg tcctcaggga ccccgagtcc      2580
     ttttcaggac tcgagagcat cagcacctct agcaaatggt ggcgagttag ctcgttaatg      2640
     ctgtgagacg cgatggtctc cctggtggct ccaccctgaa gtaatgctaa cgcggttccg      2700
     gggtggatca aaagccacgc ggcatggggg ggggttttag tgggtatggg tggtctaata      2760
     aaaaaaatcc accgagtccc acactaccgc tgtccctgcg gtgtgcctca atgcatttcc      2820
     cctccctcca caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      2880
//
ID   R1-1B_DK    repbase;    DNA;    INV; 4678 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DK;
KW   R1-1B_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4678
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1353-1353 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~89% identical to R1-1_DK.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..1239
FT                 /product="R1-1B_DK_1p"
FT                 /translation="MEEEDPFVGKTALARXPSAPRDEEEAAAFSRSSKLSR
FT                 SPQLHXPQEGGRGSDATPPPKRLRDPASPAGSPRTTXAKKSKASEEAACLQ
FT                 DLQEMGKLLQEVSARMMDKSTRHITVPLRDMIARVTTLHSSILVASRAAAA
FT                 GVXDRQESRVASNLCLKCAQNTRSVDKEQQTMSAWKKEASVQTEPWRRLSQ
FT                 TDAPGLPAPVLAPXPTRXAQQESAKAPKKPRANPPLAAHGAAVQQLTXRKP
FT                 ESQANRXNGLEVAKGSAEXASAMKESIEKVLGDSASVRATTEEGHCLGGXK
FT                 YRPDHDEAGGLRRPRGAIQLRXGESKSAQYAPRLRGNPSCGGQLARLPCQN
FT                 XPPSG"
FT   CDS           1160..4510
FT                 /product="R1-1B_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRRGFAETQAAVVSLPVSLAKTVLHRGEVRIGWTICR
FT                 IRERLGPVRCFRCLEPGHIAIHCKGPVDRSGCCINCGGPGHKAASCSKEPS
FT                 CFMCSAAGRKETRHKAGGRGCPASNSGNTNPKPACRLIQLNLNHCRAAQDL
FT                 LSQTVRELGSEVAVLSEPYRVGSSRDWATDRSGKAALWLCGEDAPELRDTK
FT                 AAEGFVRANIGGIWLYSCYLXPSLSLEAFGRILDELSSDLRGRSNVVVGGD
FT                 FNAWAMEWGSSRTNARGRAVLETFASLDVVLLNEGSRQTFSRAGVGSVIDL
FT                 TFASSALASRARWRISDAYTASDHEAIECSLGTAHRTRGPLLPDRKAFRQD
FT                 TFRPRAFASALEGFTACEDDGANEMANKLAAAVDGACNQSMLLRKPFRKHH
FT                 SPVFWWSEEIADLRRKCLRSRRLLQRARGTSRLPACNDRYKVARKELKTAI
FT                 RNSKRECFLKLCDAADEDPWGGAYKMVVKRLNAGGSAPTDPATLESIVGTL
FT                 FPNGRQVAICPSTELGDIRWVSEAEVLQAGRSLKLKKAPGPDAIPSRATKL
FT                 SLSLLSSEVACLFNKCLLEGTFPDRWKRQRLLLLPKPGKPPGEASSYRPIC
FT                 LLDTIGKVFERVISTRLGEAIEAAGGLSPEQYGFTKGRSTLDAIARVVKIA
FT                 EDAIAGTRWKGGTKSYCLVVTLDIRNAFNSADWSRTLESLRKFNIPGYLLN
FT                 VALSYFSNRVLTLDTSMGSREYNISAGVPQGSVLGPLLWNAMYDGVLRLPM
FT                 PACTSLVGFADDVAIVVAAKEIAXVEARADTAIQAVEAWLALAGLELAAHK
FT                 TEAVLISSRKAVETASVLVGGTRIRSQRAIKYLGVLIDTRLSFKEHLEYVH
FT                 KKASGTVGALSRMLPNTRGPKQCSRKLLSSVVTAQILYAAPVWAKAAAVKS
FT                 YMRGVEATYRLCAIRIACAFRTISEDAALVIAGQVPLTELIRERKEISESL
FT                 QDRRSPLSRAEVKLAARRTSMVNWQARWDSSSKGRWTHRLIPDLARWVERA
FT                 HGQVSFYLSQVLSGHGCFRQYLKRFGHETEDWCPECGTGILEDAHHVLFEC
FT                 RRFGLERHELEVAAGSPITAETLVPTMLGDPKAWEAADAFAAHVMKTLRTL
FT                 ERRRKERPE"
XX
SQ   Sequence 4678 BP; 1055 A; 1284 C; 1496 G; 819 T; 24 other;
     cccgaggccg cgtaagktcg cgctgctggc aggcggaaaa aggtctckga tctgaccaag        60
     ctccgattcc ccgcctaggc ggtgtcccga tcaagsgact tcgggsaccg agttggggcg       120
     gtatatcccc cgtcgtagag ccagggggaa atscctagcc agcgtgggag cscggcgctg       180
     accgacaagt ckgctatgga ggaagaagac cccttcgtgg gcaaaacagc gctggcgagg       240
     awgccaagtg caccgaggga cgaggaggaa gcagcggcgt tcagcaggag cagcaagctc       300
     tcccgatcgc cacagctgca cgwgccccaa gaaggagggc ggggttcgga cgctacgccg       360
     ccccccaaga ggttacggga ccctgctagc ccggctggwt caccgagaac tacgmcggcc       420
     aagaagagca aggcgtctga ggaggcagcc tgcctgcagg atctccagga gatgggcaaa       480
     ctcttgcagg aggtctctgc cagaatgatg gacaagtcga cgcggcatat taccgtgccg       540
     ctgagggaca tgattgctag agtgacgacc ctgcactcga gcatcctagt ggcaagcaga       600
     gcggccgcgg caggtgtcak cgacaggcag gagagccggg tcgcaagtaa cctgtgcctw       660
     aaatgcgctc agaacacacg gagcgtcgat aaggagcagc aaacgatgtc cgcctggaag       720
     aaggaggcat cagtccaaac cgagccatgg agaaggctaa gccagactga tgcgccggga       780
     cttcccgcac cagtgctggc cccgcmcccc actcgtmtag cgcagcagga aagcgcaaag       840
     gcgcccaaga agccccgagc gaatccgcca ctggctgccc acggtgctgc ggtccagcag       900
     ttgacgkctc ggaagcctga gagccaggcg aaccgcgawa acggcttgga ggtggcgaaa       960
     gggagcgccg agascgcctc ggcaatgaag gaaagcatcg agaaggtgct cggggactca      1020
     gcgtcagttc gcgcaacgac cgaggaaggt cactgtcttg gaggtwcgaa atatagaccc      1080
     gatcacgacg aagcaggagg tctgcgccgc cctcgcgggg caattcaact tcgakgcgga      1140
     gagagtaaaa gtgcgcagta tgcgccgcgg cttcgcggaa acccaagctg cggtggtcag      1200
     cttgcccgtc tcccttgcca aaacsgtcct ccatcggggt gaagtccgga ttggatggac      1260
     catttgcagg atccgggaac gacttggccc cgtaaggtgt ttcaggtgcc tcgaacctgg      1320
     gcatattgcg atccactgca agggccctgt ggacagaagc ggatgctgca taaactgtgg      1380
     cgggccggga cacaaggctg cttcgtgcag caaggagccg tcatgcttca tgtgctctgc      1440
     ggctggaaga aaggagacga ggcacaaggc aggaggcagg ggatgtccag cctcaaacag      1500
     tgggaacacg aatcctaagc ctgcatgcag gttgattcaa ctcaatctga atcactgcag      1560
     ggctgcgcag gatctcctgt cgcagacggt acgggagctt ggctcggagg tcgcagtcct      1620
     gagcgaaccc tacagagttg gtagcagccg cgactgggcc actgaccgct ctggcaaggc      1680
     ggccctgtgg ctctgcggag aggatgcgcc ggagctgcgc gacaccaaag cagcggaagg      1740
     attcgtccga gcgaacattg gcggcatttg gctgtacagc tgctacttgg macccagtct      1800
     ctcactggag gcgttcggca ggattctgga cgagctgagc agcgatctgc gtggacggag      1860
     caacgttgtg gttggcggcg acttcaacgc ctgggccatg gagtgggggt cctcccggac      1920
     caacgccaga ggccgagcgg tgctggagac tttcgcctcc ctggacgtag tccttctgaa      1980
     tgaaggctcc aggcagacct ttagcagggc aggggtgggc tcggtaattg acctcacctt      2040
     cgccagtagt gcgcttgcca gccgagcccg ctggaggatc agcgatgcct acaccgccag      2100
     cgaccacgag gctattgagt gttcgttagg taccgctcac cgcacaagag ggcccctact      2160
     cccagatagg aaggcgttca ggcaagacac cttcaggccg cgggcatttg caagcgccct      2220
     tgaaggcttc acggcatgcg aggacgatgg agccaacgag atggccaaca aactagcggc      2280
     tgcggttgat ggcgcgtgca accaaagcat gctactgagg aagccgttta ggaagcatca      2340
     ctccccggtg ttctggtgga gcgaggagat cgctgacctt cgccgcaaat gcctccgaag      2400
     cagaaggctg ctgcagcgag ctagaggcac ctcgcgcctt cctgcgtgca acgaccgcta      2460
     caaggtggca aggaaggagc tgaagactgc catcaggaac agtaaacgcg agtgcttcct      2520
     caagctgtgc gacgccgccg atgaggatcc ttggggagga gcctacaaaa tggtggtgaa      2580
     aaggctcaat gcgggcggca gtgccccaac tgacccggcg actctggaga gcatagtcgg      2640
     cacgttgttt cctaacggac ggcaggtcgc gatctgcccc agtaccgagt tgggcgacat      2700
     ccgctgggtc tcggaagctg aggttctaca ggccggcaga agcctgaagc ttaagaaggc      2760
     gccggggccg gacgccattc cgagcagagc aaccaagctt tctctatcgc tgctgtcgtc      2820
     cgaggtggcc tgcttgttca acaagtgcct cctggagggg acgttccccg acagatggaa      2880
     aaggcagcgg cttttgctgc tgcccaagcc aggcaagcca ccwggtgagg catcgtccta      2940
     taggccaatc tgtctgctgg acacgattgg caaggtcttc gagagagtga tctcaactcg      3000
     gttgggcgaa gccatcgaag ccgctggtgg tctctcccct gaacaatacg gattcacgaa      3060
     gggacggtct acgctggacg ccattgcgag ggtcgtcaag atcgcggagg atgccattgc      3120
     aggaaccaga tggaaaggtg gaaccaaatc ctattgtctg gtcgtcaccc tcgacatcag      3180
     gaatgccttc aattctgcag actggagccg aacgctagag tccctgagga aattcaacat      3240
     tccggggtac ctactgaatg tagcgctcag ctacttcagc aacagagttc tcacgttgga      3300
     cacgagcatg ggttccagag agtataatat ctcagccgga gtccctcaag gctccgtcct      3360
     gggacctctt ctctggaacg ccatgtatga cggcgtactg aggcttccga tgcctgcctg      3420
     caccagcctg gttggctttg cggacgacgt cgctatcgtc gtggcagcga aggagatagc      3480
     tkccgtggag gcgcgagcgg acacggccat ccaagccgta gaggcgtggc tggctctcgc      3540
     ggggctagag ttggcggctc acaagacgga agctgtcctc atctcgagcc ggaaagcagt      3600
     ggagacggcc agcgttcttg ttggagggac gaggatccgg tcgcagcggg cgataaaata      3660
     cctgggcgtc ctcatcgaca ctcgactatc ctttaaggag cacctggagt acgtccacaa      3720
     aaaggcaagt gggacggtag gagcgctctc cagaatgctg ccgaacacga gagggccgaa      3780
     gcaatgttcg aggaaactgc tatcgtcagt tgtgaccgcg cagatcttgt acgcggcacc      3840
     agtatgggcc aaagctgcag ctgtcaaaag ctacatgcga ggagtggagg cgacctaccg      3900
     cttgtgtgcc atcaggatcg catgcgcgtt ccgcacaatc tctgaggacg cggctcttgt      3960
     tatcgcaggg caagtcccac tgacggaact catccgggag aggaaggaga tctccgaatc      4020
     cctacaggac aggcggtcac cgctgtccag agccgaggtg aagcttgcag ccagaagaac      4080
     gagcatggtg aattggcaag ctcgatggga ctcctcttcg aagggccgtt ggacgcacag      4140
     gctcatccca gacctagcgc gatgggtaga gagggcgcat gggcaggtga gcttttacct      4200
     tagccaggtg cttagcggcc acggatgctt ccgccagtac ttgaagcgct ttggccatga      4260
     gacggaagac tggtgcccgg agtgcggcac tggcattttg gaggacgcgc atcacgttct      4320
     cttcgagtgc cgcaggttcg gcctcgagag acatgaactg gaggtagcag cgggatcacc      4380
     gattaccgcc gaaacattgg tgccgacgat gctcggggac ccaaaagcgt gggaagcggc      4440
     agacgcattt gccgcccacg tcatgaagac cctcaggact ctggagagaa ggcggaagga      4500
     gcggccggag taggggcctc cgcgcccgcg aagcaatgcc aggcggcggt accgcacggc      4560
     gtgagctctt attccctcgc acctttcttc gtcttactgt tggagcatta ttgttattat      4620
     tattattaat ctattatatt agggaataaa taattatttt gaatacaaaa aaaataaa        4678
//
ID   R1-1B_DVi   repbase;    DNA;    INV; 3057 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.09, Created)
DT   09-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1B_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3057
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1951-1951 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. All copies are inserted into (CA)n
CC   microsatellites, like Waldo elements. They are in tandem arrays
CC   with R1-1_DVi and R1-3_DVi sandwiching (CA)n microsatellites.
XX
SQ   Sequence 3057 BP; 883 A; 762 C; 773 G; 639 T; 0 other;
     cggacgcgtt tgtaactgct ccgctcgaaa aataatcaaa tcggtggttt ttctgagaaa        60
     attatagtga agttagtgca cgtgtgatct gtgtcatagg ccttatacac caaaaggtgc       120
     gtggcggtac tcactgcgaa gcccgtgcag agcgttcctg gtggtggcgt ctactgctcc       180
     acgatccagg cgaggggaat ggaggcgtct ccttggcgtg ttttttgcgc tattgtgagt       240
     tttatcactc aagtttagta gccggtgcgc gaagctattt gtgaagttgg ttgcattcac       300
     tctaacagct gtaagtagtg ttggctagcg cagctcacaa ccagctaatc tgcactagtg       360
     aaccagcggc caaactgcgc cttaaatgac gacttcctgt tgatcaaagc gatcaatcgc       420
     ggcaaactgc accagcggag acgatctgaa aggcgtttgc ttctgatgtg gggatatagg       480
     ccacgtagca aagagctgct ccaagtcacc aaaatgtagc ctttgcacac gaaaaggcga       540
     aaaatctacg gaccacgcta caggcagctt taaatgtccg gcgtaccgcg gggcagtacg       600
     taaaatgaaa tggtaagatt acttcaatta aatcttaacc actgcatagc tgctcaagcc       660
     cttttagagc agactgttag agaaatgcgc atcgatattg ccattatcag cgaaccccac       720
     catatagaca caaactgccc gagattatgg accgcggatc agggcggaaa aactgctctc       780
     tggatatgtg gcgagccttc gacgtcattg gagaacacaa agcccttcac tgggtttgta       840
     cgcgcacgat atggcagcct atggatacac agctgctacc tagcccgagc atgcagctta       900
     gcgagtttca agctgcatta gacgcattta tagacgacgc aagggggcgg aaggtcataa       960
     ttgctggtga cttcaacgcc tgagcagtga aatggggcag ccaagcaacc aacgcaagag      1020
     gtcgtgccct gttggaaagc ttggcagttc tgaatattgg cttgttaaac tccgggacgg      1080
     aaaacacctt tagtcggggc ggtatcggat caataatcga tctcaccttc gcaagctcgt      1140
     cacttttcgg cgcaacgaaa tggaaataaa gtgacgtata taccgcaagc gaccactccg      1200
     ctatattatg cacgattggt gaaagaactg cagccagatc cagaagctca agtcgtaaag      1260
     cctaccgctt ggatactttc gaccgcgtga cgttttcgaa cgcagtccag ccggcaacgc      1320
     agagaataga gcctcccaaa tggcaatcca attgacacgt gccagatgaa agcatgaaaa      1380
     atcggaaaac gtttcggcgc caccatgtac ccacatactg gtggaacgag aatattgccg      1440
     aagcacggcg gaactgcatc caagccagaa ggagatacca gcgagcccga ggtagaccca      1500
     actacggcga agaccaacta ggatatcaga gggcctgaag actgctaaag aaggccattc      1560
     gagatagcaa gcgagaatgc ttcctggagc tatgcgacta tgcgaatacg atccttgggg      1620
     caaggcgtat aaaactgttg taacgagact ctacgccgga aagcaaatgc agcctcccga      1680
     cccaggtgag ctgaagcgga ttgtggaaac gctattccca atcagacccg acatagagcc      1740
     ctcaccgagt caaggagcag ccactccagt gcaaatcgac gaaatttcag tcgatgaggt      1800
     gttgacgatc gccagaagcc tcaagcccag taaggcgccg ggtccggatg gaattcccaa      1860
     ccgagcgctg aaattggcca tgcgcctaca gcccgtgcag ttcgtacagc tcttcaacac      1920
     gtacctaagg gagagaactt tcccctcaat atggaaacgc caagcactgg tcttgttacc      1980
     gaagctaggc aagccatcgt catacaggcc gatttgcctc ctggacacgt taggcaaagt      2040
     gctgaagaag ctaatttgca gcaggcttga agctgctctc gagaaaaatg gaggtttgtc      2100
     ccaaagccac tttggcttca ccaaggcaaa gtcgacaatt gacgctttgg aaaaagtcgt      2160
     cggcatagca acaaacgcca tccaaggatc aagatggaac gcctttaaca cagcaaggtg      2220
     ggacaaaaca ttggaagcac tatcaacata ccgcgtccca tattactctc aggagatgat      2280
     acgcagctat tttagagaaa gactgatgca atacgacacc gcagatggcc ccactacaca      2340
     ccaagtgtcc gctggggtgc cccaaggctt agttctagaa cccctcctct ggaacatcat      2400
     gtacgatgac tggaacttcc gatcgataca agtatcgtcg gcttcgcgga cgatgtgacc      2460
     tttgtagtcg tcggcaagga attaaaggac gtaaaggaat cgtgcaaaca cagtattgac      2520
     cgtatgcacc aatggctggc agcagctgga ctcgagctgg ctgctcataa aacagaagcg      2580
     gtgttagtca gcagtcgaaa aagagtggaa acagcgcaca taagagtcgg cagtgcgaca      2640
     atagaatcag caagggcgtt aaagtacctg ggtgtcatgc tagacacaag aatgtcgttc      2700
     aaagagcact tggagtacgt gcactagaaa gcagcaaagt cctgtcgagc gctatccagg      2760
     attatgctaa acagcagaga ctccgtctcc ttatgaccgt aaaccgagcg gtaataatgt      2820
     acgcgtcccc atctggagca gagctatggc tgttcccagc tacagccggg gcgtacactc      2880
     tatatatcgc ctaagcgctc tacgggtcag ctgcgcattc cgcatttagg tagcaagaac      2940
     atgcctgtga agcaatgctt cgcggccgtt ccgcaggcaa tccacgctac ctaaacaata      3000
     ccccaactat aacctaagct aaataactaa gcataaataa actgaataca aaaaaaa         3057
//
ID   R1-1C_DK    repbase;    DNA;    INV; 3156 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DK;
KW   R1-1C_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3156
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1354-1354 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The consensus is ~77% identical to
CC   that of R1-1_DK.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           17..3004
FT                 /product="R1-1C_DK_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRAAQDLLTQTVRERGSEVAILSEPYR
FT                 IGNSRDWATDRTGKAALWLCGVGAQQMCDIKAADGFVRANVGGTWLYSCYL
FT                 APSLSLESFGRILDELSIDLRGHSNVVVGGDFNAWAIEWGSSRTNARGRAV
FT                 LETFASLDVVLLNEGSRQTFSRAGAGSVIDLTFVSSALARRARWTIGEVYT
FT                 ASDHEAIECSLGMAGRPSGPPPLPRRAFRQDTFRPRAFASALEGFAVDEAD
FT                 GANVMANKLADAVEDACDRSMLQRRPFRGNHRPVFWWSEEIAELRRICHRS
FT                 RRLLQRARGSPLLVECSERYKAARKALKIAIRDSKRESFLKLCDAAEEDPW
FT                 GGAYKMTVKKLNAGGNAPSDPEALEGIVRALFPDGQPVGNFPRAEPGEFRS
FT                 VTEAEVLQAGRNIKPKKAPGPDGIPSRATKLALALLPEQVAGLFNKCLQEG
FT                 TFPVRWKRQRLLLLAKPGKPPGEASSYRPICLLDIIGKVFERVIATRMTEA
FT                 VEAAGGLSTEQYGFRKGRSTMDAIMKVVKTAREAIAGSRWKGGTKSYCLVV
FT                 TLDIRNAFNTADWGRTLESLRMFNIPSYLLNVALSYFSNRVLTTDTCLGSR
FT                 AYKVSAGVPQGSVLGPLLWNAMYDGVLRLPMPEGTSLVGFADDVAIVVVAK
FT                 ELATVEAHADAAVQAVESWLANAGLQLAAHKTEAVLVSSRKAVETASVRVG
FT                 GTTIRSQRAIRYLGVLLDTRLCFKEHLEFVHKKASGTAGALSRMLLNTRGP
FT                 KQATRKLLTTVVTSQMLYAAPVWAEAAKVKSYVRGVEATYRLCAVRIACAF
FT                 RTISEDAALVIAGQVPLTELVRERAEIYAAAQXREATQQTRAESKITARRR
FT                 SLENWQNRWDSSQKGRWTHTLIPNLTSWVERSHGQVDFYLTQVISGHGCFR
FT                 SYLKRFGHETEDWCPVCGSGVVEDARHVLFECHRFDHERQELEAVAGSSIX
FT                 AETLVPMMLADQRVWEATATFAADVMKSLREQERRRKEQTE"
XX
SQ   Sequence 3156 BP; 738 A; 840 C; 1026 G; 548 T; 4 other;
     ggaacaaacc aaccaaatgc agctaattca gttaaacctg aatcactgca gggccgcgca        60
     ggatcttctg acgcagacag tgcgcgaacg cggctcagag gtagctatcc tcagcgagcc       120
     atacaggata ggaaacagcc gagactgggc cacggaccgt actggcaaag cggccctgtg       180
     gctatgcgga gtgggtgcgc agcagatgtg cgacatcaag gcggctgacg gcttcgtcag       240
     agcaaatgtt ggcggcacgt ggctatacag ctgctacctg gcgcccagcc tttcgctgga       300
     gtccttcggt cgtatcctgg atgaattgag catcgacctc cggggacata gcaacgtggt       360
     ggtcggtggc gactttaacg cctgggctat cgaatgggga tcttcccgga caaacgcaag       420
     aggccgcgcg gtgctggaaa cctttgcctc gctggacgtc gtcctcttga acgaaggctc       480
     ccggcagacc ttcagcaggg caggcgcggg atcggtcatc gatctcacct tcgttagcag       540
     tgcgctggcc cgccgcgccc gttggacgat cggggaagtc tacactgcca gcgaccatga       600
     ggccatcgag tgctcgctag ggatggccgg ccgacccagt ggccccccac ctctaccaag       660
     aagggcgttc cggcaggaca ccttcagacc tcgggccttt gcaagcgccc ttgagggatt       720
     cgcagtggac gaagctgatg gagccaacgt gatggcaaac aagctggccg acgccgtgga       780
     agacgcctgc gaccggagca tgctccagag gaggccgttc cgaggaaacc accgcccggt       840
     tttctggtgg agcgaggaga tcgccgagtt acgccgcatc tgccaccgct ccagaaggtt       900
     gcttcagaga gcaagaggaa gcccgctcct tgtggaatgt agcgagcgat acaaagcggc       960
     gaggaaggcg ctgaagatcg ctatcaggga cagcaagcgg gaaagcttcc ttaagctgtg      1020
     tgatgccgcc gaggaggatc catggggagg cgcgtacaag atgacggtga agaagctyaa      1080
     cgcgggggga aacgccccat ccgacccgga ggcactggag gggatcgtca gagccctatt      1140
     cccagatggt cagcctgtcg gaaacttccc aagagctgag ccaggwgagt tccgcagcgt      1200
     cacggaagcc gaggtactgc aggccggcag gaacataaaa cccaagaagg cgccgggacc      1260
     cgacgggatt ccaagcagag cgacaaagct ggctctagcg ttgctgccgg agcaagtggc      1320
     cgggcttttt aacaaatgcc tccaggaagg tacgttcccc gtgaggtgga aacggcaacg      1380
     gctgttattg ctggccaagc caggcaagcc gccaggagag gcttcctcct acaggccaat      1440
     ctgcctgctg gacataatag gcaaagtctt cgagagggtg atcgcaacca ggatgacaga      1500
     agccgtcgaa gcagcgggcg gcctatccac tgagcaatac ggcttcagga agggaaggtc      1560
     gaccatggat gccatcatga aggtggtcaa gacggctagg gaagccatcg ctggttccag      1620
     gtggaaagga ggaacgaaat cctactgtct agtggtaacc ctggacatta ggaacgcgtt      1680
     caacacggct gactgggggc ggacactgga gtccctgagg atgttcaaca tccctagcta      1740
     cctgctgaat gtagcgctaa gctactttag caacagagtg ctcacgacgg acacatgcct      1800
     gggttccaga gcatacaaag tctcagccgg agtcccgcag ggctccgttt tgggacccct      1860
     gctctggaac gccatgtacg atggagttct gagactccca atgccagagg gcaccagcct      1920
     ggttggtttt gccgatgacg tcgccatagt ggtggtagcc aaggagctag ctacggtgga      1980
     ggctcacgct gacgcagcgg tgcaggctgt agagtcgtgg ctagcgaacg cagggctgca      2040
     gctggcggcc cacaagacgg aggcggtgct tgtctcaagt cgaaaagcgg tggagacagc      2100
     tagcgtgagg gtcggtggaa ccacgatacg gtcccagcgg gcaatccggt acctcggcgt      2160
     tcttctagac acgcgcctgt gcttcaagga gcacctggaa tttgtgcaca agaaggccag      2220
     cggaaccgca ggagctttat ccaggatgct gctaaacact agagggccga agcaagcaac      2280
     ccggaagctg ctcacgacgg ttgtgacgtc gcagatgctg tatgcagcgc cagtgtgggc      2340
     ggaagccgct aaggtgaaaa gctatgtgcg aggggtggag gcaacctata ggctgtgcgc      2400
     cgtcagaatc gcgtgcgcct tccgaaccat ttcggaagac gcggcgctgg ttatcgccgg      2460
     acaagtcccg ttgacggagc tcgttcggga gagggcggag atctacgcag ccgcgcaggw      2520
     cagggaagca acccagcaga ctagagcaga gtcgaagatt accgccagaa ggagaagcct      2580
     cgagaactgg cagaatcgct gggactcatc gcaaaaagga cgctggacgc acacgctcat      2640
     ccccaacctt acgagctggg tagagaggtc gcatgggcag gtagatttct acctcaccca      2700
     ggtgatcagc ggtcatggct gcttccgcag ctacctaaag cggttcggcc acgagacgga      2760
     ggactggtgc ccagtgtgcg gctccggcgt cgtcgaggac gcgcggcacg tgctgttcga      2820
     gtgccaccgg tttgaccacg agcgacagga gttggaggcg gtagcagggt ccagtatckt      2880
     ggcagagaca ctggtgccga tgatgctggc agaccagcgt gtgtgggagg ctacagcgac      2940
     attcgccgcg gacgtcatga agtctctcag ggagcaggag cgaaggcgaa aggagcagac      3000
     agagtagggg tcacagcgcc cgcgaagcaa tgccaggcgg cggtaccgct gggcgtccga      3060
     ttcgtattct ttctgttaat tgttaagcca tccatgttta tgtgtagtgt atgtatatat      3120
     tgtagagtaa taaatataac gaatataaaa aaaaaa                                3156
//
ID   R1-1_AEc    repbase;    DNA;    INV; 3994 BP.
XX
AC   .
XX
DT   20-AUG-2012 (Rel. 19.03, Created)
DT   20-AUG-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Panamanian leafcutter ant
DE   genome: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-3994
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Panamanian leafcutter ant
RT   genome.";
RL   Repbase Reports 14(3), 746-746 (2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..3443
FT                 /product="R1-1_AEc_1p"
FT                 /translation="MSFALAQTNLNHSAGAQSMLMQCLAEWGGGLAIAADP
FT                 YRIPESHPNWAGDSLGRVAVVSRHARDIPPMIPISAGEGFTLVEWGPIDVA
FT                 GCYFPPRLMRREYEDALESLGEHIRRRFPRPILVGGDFNAHALEWGSPSTD
FT                 SRGDSTLLWAARHGLVLLNRGRASTFVGARGESIVDLTRATPAAAIKXRGW
FT                 HVDAGSLGEMTDHRLIRMELVSTPAEVSLRRRRREMERRWALRKLDPGALE
FT                 VSLLSSTWPERNPARSVEEEADWLGDAMSRACDASMPRCRPVARRAAYRWS
FT                 EELAELRRATVAARRKYTRRRRRGTDAETEVAAGALRDARSALRAAIRRAK
FT                 ADAWREFVSSLDRDPWGRPYGXVTKKLRPWAPPITETLDARFLEDVVAALF
FT                 PNRERDIPERAGPPSGWTEELSVTGEEMAKAFARLKGRPRAPGPSGVHGRV
FT                 WLAAAPIVGDRLRQLFTSCLRXGXFPRSWKRARLVLLRKEGKPAESPSAYR
FT                 PXCLLDDAGKLLERVIAARIVRHLSRDGPNLSRGQYGFREGLSTIDAVRQV
FT                 RALSEQMTAGGEVALAVSLDIANAFNSVPWGRVVGAMRGHHLLPPYLVAIV
FT                 EDYFRDRQLEFHDKMGLQQRRDASCGVPQGSVLGPLLWNVAYDYVLRAALP
FT                 PGCHVVCYADDTLVVAGGTTWERAVGTANVAVACVVGSXKELGLRVAPAKS
FT                 EALFFHDGKSGVPPQAHIVVDDVRVPVGPTIKYLGLTVDGRWGFVEHFDEL
FT                 APRLGRRADALLGLMPNLRGPNESVRRAYMHAVLSGALYGAPVWSGKALAS
FT                 RRIKQKLHSVQRRLALRICRAYRTVSYAAAMVLAGIPPAEYVADALAETFA
FT                 GVKAIRLRGGVVTPRTVDRLRRNARRRVFGEWRATLENDPPTTGARTVEAI
FT                 LPCLEEWVGRGWGGLSFHATQVLTGHGCFGEYLCRIGKEPTARCRHCDGDR
FT                 DTAQHTLEACPAWAGERGVLVREIGEDLSLPAVVKEIVGGESAWRAFSSFC
FT                 DRVMSQKEEAERQRERAPGGRGPLPPPPPPGGGAGGGGGDARGGGVGGRRG
FT                 RRLQPGRSRPGSPLARPRRRDRPTGRERRRPSPPIQEVTEEEDDGGVCGGG
FT                 RGRRSLLPLRHXRRLRVSDAGRXEAAADCRP"
XX
SQ   Sequence 3994 BP; 654 A; 1256 C; 1456 G; 614 T; 14 other;
     gagggcgagg agcgagggac caaataatgt ccttcgccct cgcccagacg aacctcaacc        60
     actcggccgg ggcacaaagc atgctcatgc agtgcctcgc cgagtggggg ggggggctgg       120
     ccatcgccgc agacccatac cgaatcccgg agagtcaccc caactgggcg ggggactctc       180
     tgggacgggt ggcggtggtc agccggcacg cgcgcgacat cccgccgatg attcccatat       240
     cggcggggga ggggttcact ctggtagagt gggggcccat cgacgtagcg gggtgctatt       300
     tccctcctcg cctaatgagg agggaatacg aggacgccct ggagtctctg ggggagcaca       360
     ttcgacgacg cttccccaga ccgatactgg tgggtgggga cttcaacgcc cacgcgttgg       420
     agtggggttc cccatccacc gactccaggg gcgacagcac cctgctgtgg gcggcgaggc       480
     acggcctagt cctactgaat aggggccgtg ccagcacctt cgtgggggcc cggggggagt       540
     ccatcgtcga cctgacgcgg gcgacccccg cggcggccat caagatncga ggatggcacg       600
     tggacgccgg ctccttgggc gagatgacgg atcatcgtct gatccggatg gagctggtgt       660
     ccacccccgc ggaggtgtca ctaagacgcc gccgacgaga gatggaacgt cgatgggccc       720
     tgcgcaagtt ggaccccggc gccctcgagg tgagcctcct ctcctccacc tggccggaac       780
     gtaacccggc ccgctcggtg gaggaggagg ccgactggct cggggacgcc atgtcgcgcg       840
     cgtgcgacgc gtcgatgccc cgctgccgtc ctgtggcgag aagggcagcc taccggtggt       900
     ccgaggagct agctgagcta cgacgggcca ccgtggccgc caggaggaag tacactcgcc       960
     gcagacggcg gggcaccgac gcggagacgg aggtggccgc cggggcgctc cgtgacgcaa      1020
     ggagcgccct tagggcggcc attaggaggg cgaaggccga cgcctggcgc gagttcgtct      1080
     cctccctgga cagggatccg tgggggaggc cctacggaat ngtgacgaag aaacttcgtc      1140
     cgtgggcccc cccgataacg gaaaccctgg acgctcggtt cctggaggac gtggtggccg      1200
     ccctctttcc caacagggaa agggacattc cngagagggc cggccccccg tccggatgga      1260
     cggaggagct gagcgtcacc ggggaggaga tggcgaaggc cttcgcccgc ctgaagggga      1320
     ggccgcgggc gcccggaccc tccggcgttc acggcagggt ctggctcgcc gcggccccca      1380
     tcgtgggcga tcgnctgagg cagctcttca cgagctgcct cagaganggc atntttccca      1440
     ggtcgtggaa gagggccagg cttgtcctcc tacgcaagga gggcaagccg gcggagagtc      1500
     cctccgctta taggccgatn tgcctgctgg acgatgcggg gaaattgctg gagcgagtca      1560
     tcgctgcccg catcgtccgg cacctgtccc gggatggtcc caatctatcc cgcggtcagt      1620
     acggcttccg ggagggcctg tcgacgatcg acgccgtcag gcaggtcaga gccctctcgg      1680
     agcagatgac cgcgggaggg gaggtggcgt tggcggtgtc cctggacatc gccaacgcct      1740
     tcaacagcgt cccgtggggc cgggtggtgg gggcgatgag aggacaccac ctcttgcccc      1800
     cctacctggt cgccattgtc gaggactatt tccgggacag gcagctggag ttccatgaca      1860
     aaatgggact ccagcagcgg agggacgcgt cgtgcggcgt tccacagggg tccgtgttgg      1920
     gccccctact ttggaacgtc gcatacgact acgttctccg cgcggcccta ccccccggct      1980
     gccacgtcgt ctgctacgcg gacgacacgt tggtggtggc cgggggcacg acctgggaga      2040
     gagccgtggg aacggcgaac gtcgcagtgg cgtgtgtggt cggctccatn aaggagttgg      2100
     gcctgagggt ggcccccgct aaatcggaag ctctgttctt ccacgacggg aagagcgggg      2160
     tgccccctca ggcacatata gtggtggacg atgtccgcgt cccggtgggg cccacgatca      2220
     aatatctggg cctcaccgtg gatggtcgct ggggcttcgt cgaacacttc gacgagctag      2280
     ccccgcggtt gggccgccga gcagacgctc tgctcggcct catgcccaac ctccgcggtc      2340
     cgaacgagtc ggtcaggcgg gcgtatatgc acgccgtcct gtccggggcc ctttacgggg      2400
     ccccggtttg gagtgggaag gccctggcca gccgccgaat aaagcagaag ttgcacagcg      2460
     tgcaacggcg gctggccctg cgtatctgta gggcctacag gacggtgtcg tacgcggccg      2520
     ccatggtcct cgcggggatc ccccctgccg agtacgtggc cgacgccctg gcggaaacct      2580
     tcgccggggt gaaggccatt cggcttcggg ggggggtcgt aaccccgagg accgttgacc      2640
     gactgaggag gaacgcccgt cggcgggtct tcggagagtg gcgcgccact ctcgaaaacg      2700
     acccgccgac aacgggcgcc cggaccgtgg aggccatcct cccctgcctc gaggaatggg      2760
     taggcagggg atggggcgga ctatcgttcc acgcgacgca ggtgctcacc ggacacggat      2820
     gtttcgggga gtacctgtgt cgcataggta aggagccgac cgctcgttgt cgccactgcg      2880
     acggggaccg ggacaccgcg cagcatacgc tggaggcctg cccggcctgg gcgggcgagc      2940
     gcggtgtcct ggtccgggag ataggggagg atctctccct gccggctgtc gtgaaggaga      3000
     tagtcggcgg ggagagtgct tggagggcct tctcctcctt ctgcgatcgg gtgatgtcgc      3060
     agaaggagga ggctgagagg cagagggaga gggcaccggg aggtcggggc cctctcccgc      3120
     ccccgccgcc tccgggcggc ggagctggcg gggggggagg agatgcgcgg ggtggcggcg      3180
     tcgggggncg acgcgggcgc cggctccagc cgggtcgctc gcgccccggg tcaccgctcg      3240
     cgcgtccgcg ccgccgagac cgccccacgg ggcgagaacg gcggcgacct tctcccccta      3300
     tacaggaggt aaccgaggag gaggacgacg ggggtgtatg tggggggggg cggggccggc      3360
     ggtccctcct ccccctccgt catcancgac ggctccgcgt ctcggacgcg gggcgcngtg      3420
     aagcggcggc ggattgccga ccctagggtc ncatcgccgc cggacaangg ntgacccccc      3480
     gcgcgcgggg atatagtacc gccgccccct agtcatgacg actgtgcggc ggtgacaggg      3540
     tctctgcatc gccgtgcgcg gggggtgtcc cctcgcggcg ccaagatatg aggggcgcca      3600
     aacactcgat tagtgaccct tggagggctg gggatcccgg cgggggccgg gatccccaat      3660
     tcccgcgccc caataacaac cggggggcgg acgcgggggt ggtgtccccc cagcgcccga      3720
     atgttgggcc gtcggtgcct cgcaccgccc ggggtcgtct tctcgacgtc ttaaaatccc      3780
     cgggcgagaa aggatgtcgg cacacaaagc tgactggcca gaggggctga ctcccagaag      3840
     tatgctgcac gcgttcctgg gagcccctca cacaaggcct gttcaggaca cctggagggg      3900
     ttttagtgga tgcaagcccc acataacccc gggctcttcc ccgaggcccg aggtatgcat      3960
     taggcatttc ccctccgtta tcaaaaaaaa aaaa                                  3994
//
ID   R1-1_AP     repbase;    DNA;    INV; 5868 BP.
XX
AC   Contig61185;
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 4)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_AP.
XX
NM   R1-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5868
RA   Jurka J.;
RT   "Non-LTR retrotransposons from pea aphid.";
RL   Repbase Reports 9(8), 1793-1793 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   May be 5'-truncated. It is inserted at the site identical to the
CC   integration site of other R1.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           782..2170
FT                 /product="R1-1_AP_1p"
FT                 /translation="MSDNNEMEEEAEPSTSQAGSLQRSPPSLGGSPSHKKT
FT                 KAGPAPAPKARVAIKWIRHTLDLASTRKSAMAVETQRNLFEKLEELDTAVT
FT                 DLVIENLQLRSQVEEARRSAEICVGAAASQFGTELRLREAAHEQTLEAVVA
FT                 RYAEKEAIRTHEAATKAREGEAAIAENIADRHEPDDQTFAQVTKRRQRQPR
FT                 KEQPPVDRTAARSKSRNARRARLLDESRKEEHQPAFVIQPSDTAKASETSI
FT                 GIWKAVMSKRIVPRCHTITTKQGKVIIKPQNKETADVLKSLARESNVLQEE
FT                 ALMWPRFIIRGAPTSMPEDTLQEAILDQNPELGIESGCIDRVFKPVFKTGP
FT                 RDRDDTNWVVEVNPMYYQNVRKIEHLYIGFMRCRVAGYDEVTQCHLCLRYG
FT                 HPAAKCNETQQTCAHCGRKGHVAGECPAAEGEPSCSNCHGKHNAREKSCSA
FT                 RTNHLVGRSRRTDYGKTQ"
FT   CDS           2170..5184
FT                 /product="R1-1_AP_2p"
FT                 /translation="MSFPPLKIVQLNMGRAAAVSDQLLSYCQDTGVDIALV
FT                 QEPYTNRGRLTGFEVAPIRCYLSMGTRRRGGPRHIDHGAAIIVLNPNLVVA
FT                 SRDSGRVKNFVSIDLDCGAEGQWTMISGYFKYRVPTEIHVSALESLTEQNG
FT                 NSLLIGLDANAFSTRWFSRINDRRGEVLSQFIDAQRLQVENKRSVHTTFRG
FT                 PRGKTNIDVTLSSGQISTRVRDWTVLPGITSSDHQLIRYEVDAQPRRFVQP
FT                 PPRYNVNRALVEQFKMEFHLRSEGRQCHQDIDSMATAIVEDITAAADLYIP
FT                 KSSHRRKVKPPWWTDELLAARRNLRRAARRVDDTVTRAEYNVLRNSYTSLL
FT                 RKCKIGSWRRFCTTEGKLPWGKLYRWMRQGVKPQSVPVLMMRPDGTQCQTL
FT                 DESLTSLLNTLIPNDPDQEDPAPVESNEENWTETTEVELRTFAWSVAPNRA
FT                 PGADCISGKMVRLLWQNLHPRLRSLANSCMRRAKFPKDWKAAVVVPILKGV
FT                 GRDIRNPKSYRPVSLLPVLGKIVEKIINVSLRTQIEPRLTGKQYGFTPGRS
FT                 TLDAIRNLLTWSRLNEEKYVLTVFLDITGAFDNLKWSALLEDLATLGVSEH
FT                 TRSLIMDYLSGRTATLKIGGVSKTVRVTKGCPQGSILGPILWNVTMEALLR
FT                 AEQPQYVNMQAYADDVAISVAGPTRASIIRRTEQALQPVLQWARSRGLSFS
FT                 AQKSTAMITKGSLVHGFTLAFGDERIVTVPHTKYLGVTIDSDWKWDVHIER
FT                 LTEDHDDIFSRLRGTMGAGWGIKRENLMTLYRGVFLPRVAYGVSLWVHAVG
FT                 SEGNKKRLHRLQRRVLLGLTCAYRTTSTDALQVLAGVLPLDLELKWIAIKE
FT                 DAKGLPEGVRRGTIHLAYEDIMDEWQSRWSNSHKGRWTHQCFPDVRARQTS
FT                 PLAMGHEVAQFLTGHGNFRAKLAYFGRQPSPVCLCGAEDEFVDHVIFRCER
FT                 HSAHRAHLELEVHRAGHLWPCEMETLVSSKRLYTALVRFAKTAAYYEQLD"
XX
SQ   Sequence 5868 BP; 1492 A; 1533 C; 1716 G; 1127 T; 0 other;
     agtgtccact ttactgtgga gtccgaaaga cgtgcgttgc tacggttgat cgtgctccga        60
     ggggcgccct cttgcggttt ttctgtgcag acgctgtaag tccctgattc ttcaggaatt       120
     ttttccgttt ttggtgcgta ccgggttaat acaagtgcgc gaacagaccg gtgtcgattt       180
     tgagtcggtc tgtccaaaac cctctctgtg gggaccgttt ttgtgtctgc ccataaggct       240
     aacacggccg ccctgtggta tcagctggta tttgccgagc gatttttgtt ttttcgtcag       300
     acacgagacc aggcgtcaag agcctgacga cgtgagttcg gtcattatat aacgtaatat       360
     tacgtaatat cacttaaacg tgacccccca cctagtggct ggtataggta gtataccacc       420
     ccctcccgaa aagtttaatt ggctataact tccaagggaa aaggggtaca gaccccggac       480
     ccagggggaa ctcaattttt gagcacacca cttgttttcc cgtatttggg aacaaagccc       540
     ccaccccccc ccctgatttg agttaagtat aactacgtgg gaaatcgccg caagagccta       600
     ggggcaacgg ttatcggtta ccctaggtca gggccgcaat ccgacccaat agggaacggg       660
     gtaccccccc accccccatt ttggtttttc gttttttggg cagaaatcgt ttagggaggc       720
     tatctaaacc cataccccgc aggggaaact cggggtttcg aattcccccc ccaccagagg       780
     gatgtcggac aataacgaaa tggaagagga ggcggaacct tccacgtccc aggcaggtag       840
     tctgcagagg tctccccctt cattaggtgg atctcctagc cataaaaaga cgaaggctgg       900
     acctgccccg gcgccgaagg ccagagtggc cattaagtgg atcagacaca ctttggactt       960
     agcgtcaacg agaaagtccg ctatggcggt agagacgcag aggaaccttt ttgaaaaact      1020
     ggaggagctg gatacggcgg tcaccgacct tgtgatcgaa aacttgcaac tcagaagtca      1080
     ggttgaggag gcgaggaggt cagcggagat ttgcgtgggg gctgccgcat cacaatttgg      1140
     caccgagctt cggctgaggg aggcagctca tgagcagacc ttggaggctg tggtggccag      1200
     atacgccgaa aaggaggcca tcagaacgca cgaagccgcg accaaggcca gggagggtga      1260
     ggctgccatc gctgagaaca ttgcggaccg gcatgagcct gatgatcaga cattcgccca      1320
     ggtcaccaaa aggagacaga ggcaaccccg aaaggaacag ccaccagttg atcgcacagc      1380
     ggctaggtcg aaatcgagaa acgctagaag agccagactc ctggatgaga gcagaaagga      1440
     ggagcatcaa ccggctttcg tcatccagcc gtcagatacc gccaaggcca gtgaaactag      1500
     cataggcata tggaaggcgg taatgtcaaa gagaatagtg ccgagatgcc acacgattac      1560
     tacgaaacaa gggaaagtga taattaaacc acaaaacaag gagacagcgg atgtcctgaa      1620
     gtctctcgcc cgggaatcca atgttctcca ggaagaagca ctgatgtggc ccagatttat      1680
     catcaggggc gccccaacat ccatgccgga agacaccttg caggaggcca ttctggacca      1740
     gaatccggaa ctcggaatcg agtcagggtg tatcgacaga gtgttcaaac cggtattcaa      1800
     aacaggtccg cgtgacagag acgatacaaa ctgggttgtg gaggtaaatc ccatgtacta      1860
     ccaaaacgtc aggaaaattg agcaccttta cattggtttc atgaggtgta gggttgcggg      1920
     gtacgacgag gtcacacagt gtcacttgtg tctcagatat ggtcacccgg cagcgaaatg      1980
     taatgaaaca caacaaacct gcgcacactg tggtcgaaag gggcacgtgg ctggggagtg      2040
     cccggcagcc gaaggagagc cgtcctgttc taattgtcat ggcaagcata acgccaggga      2100
     gaaatcctgc tctgcgagaa cgaaccacct ggtgggaaga tctaggagga cggactacgg      2160
     gaagacgcaa tgagcttccc acctctcaag attgtgcagc taaatatggg ccgagctgcg      2220
     gcagtcagcg accagctgct gtcctactgt caggacacgg gcgtggacat tgccctcgta      2280
     caggagccgt acaccaacag aggcaggctc acaggtttcg aggtggctcc catcaggtgt      2340
     tacctctcca tgggcacgcg ccgcaggggc ggtccacgac acatcgacca cggggctgcc      2400
     atcatagtgc tcaacccgaa cctggtggtc gcgtcccgcg attctggccg cgtgaaaaac      2460
     ttcgtcagta tcgacctcga ctgtggtgcc gaaggtcagt ggacgatgat cagtggttac      2520
     tttaagtacc gtgtgcccac tgagatccat gtcagcgccc tggaaagcct cacggaacaa      2580
     aacgggaaca gtttgctaat aggcctggac gcaaacgcat tctctaccag gtggttcagc      2640
     cgaatcaatg atagacgtgg cgaagtgctc tcccagttca ttgacgccca acgccttcag      2700
     gtagaaaaca agagaagcgt acacaccacc ttcagaggtc cccgcggcaa aaccaacatc      2760
     gacgtaacgt tatctagcgg tcagatctcg accagggtac gcgattggac tgtcctgcca      2820
     ggcatcacgt ccagtgatca ccagctgatc aggtacgagg tggacgctca acccagaagg      2880
     ttcgtacagc ccccgcccag atacaacgtc aatagggcac tagtagagca gtttaagatg      2940
     gagtttcacc tgcgatccga gggcagacag tgtcaccaag acattgacag catggcaacc      3000
     gccatagtcg aggacatcac ggcagcggct gatttgtaca ttccaaagtc gagtcataga      3060
     aggaaggtca aacccccgtg gtggacggat gaactcctgg cagccaggcg caacctacgc      3120
     agagcggcaa ggcgtgttga cgacactgtc acccgagcag agtataatgt cctaaggaac      3180
     tcctacacct cgctcctaag aaagtgcaaa atcgggtctt ggcgcagatt ctgtacgaca      3240
     gaaggaaaac tcccatgggg aaaactgtac agatggatga ggcaaggtgt taagccacag      3300
     tcggtaccag ttcttatgat gcgcccggat ggaacacagt gccagacgct ggatgagtca      3360
     ctgacctcct tactgaacac gctgattcca aacgacccag accaagagga cccggcaccc      3420
     gtagaatcaa atgaggaaaa ctggacagaa acgacggagg tagagctgag aacctttgcg      3480
     tggtccgtcg ctccaaacag agcaccaggc gcggactgta tcagtgggaa gatggttcgc      3540
     ttgctgtggc aaaacctgca cccgaggctg cggagcctgg ctaacagctg catgaggagg      3600
     gcgaagttcc ccaaagattg gaaagcggca gtggttgtcc caatactcaa gggcgtgggt      3660
     agggacatca ggaacccgaa gtcttaccgc ccggtcagcc tgctgccagt tcttggcaag      3720
     atagtcgaaa aaatcataaa tgtgagcctc aggacccaga tcgagccgag actcacgggg      3780
     aagcaatacg gcttcacccc aggcagatcc acgctggatg caatccggaa tctgctgacc      3840
     tggtccagat taaacgagga gaaatacgtt ttgacggtgt tcttggacat aacaggggcg      3900
     tttgacaacc ttaaatggtc agcgctcctg gaggacctcg cgaccctggg agtcagcgaa      3960
     cacaccaggt cactgatcat ggactacctg tccggcagga ccgcgacgtt aaaaataggc      4020
     ggggtgtcaa agacggtaag ggtcaccaag ggctgcccgc agggttctat ccttggccca      4080
     atactttgga atgtcacaat ggaggcgctc ctcagagcgg agcaacctca gtacgtaaac      4140
     atgcaggctt acgcggacga tgtcgcgatc agtgtagcag ggcctacaag agccagtata      4200
     atccgacgca ccgaacaggc actccaacct gttctccagt gggcgcgctc aaggggactg      4260
     agtttctcgg ctcagaaatc aacggcaatg attaccaagg gttccctggt tcacgggttc      4320
     accctggcct ttggtgacga gcggatagtg acggttcccc acacgaagta cttgggagtc      4380
     acaattgaca gtgactggaa gtgggatgtt cacatagaaa gattgaccga ggaccatgat      4440
     gacatcttct cgagattacg cggcacaatg ggtgcaggat ggggcatcaa aagagaaaat      4500
     ttgatgaccc tgtacagagg agtttttctc ccacgagtgg cgtacggtgt cagtctttgg      4560
     gtccatgcag tgggttctga aggcaataaa aagaggttgc acaggctaca acgcagggtt      4620
     ctgttgggac ttacctgcgc gtacagaact acttccaccg acgcactgca ggtcctagcc      4680
     ggggtcttgc ctctagacct cgagctcaaa tggatagcga tcaaagagga cgcaaaaggt      4740
     ctaccagagg gagttagacg gggaaccata cacttagcct acgaggacat catggacgaa      4800
     tggcagagta gatggtccaa ttcacacaaa ggtagatgga cacaccaatg cttcccggat      4860
     gtccgtgctc gacaaaccag cccgttggca atgggacatg aggtagccca attcctcacc      4920
     gggcacggga acttcagggc caaattggcg tactttggca ggcagccatc cccggtgtgc      4980
     ctttgcggag cggaggacga attcgtggac cacgtaatat tcagatgtga acgacacagc      5040
     gcacacagag cgcatctgga actggaggtc cacagagccg gacacctctg gccatgcgaa      5100
     atggagaccc tggtttcttc aaagagactg tacactgcac tggtcaggtt cgcaaaaact      5160
     gcagcgtatt atgagcagct tgactgagac tgcgaaacag gacgggcaag acactctgcg      5220
     agccagagtg ccaaaccccg catatgttct gaacgagtgt caaggagtga gaaggcagaa      5280
     gcggttcata tgcggggccg tcctgagggg acactcgtgc gtcggggacg cgggcggcgc      5340
     tgacgcggac aacagtggtt cgcggacaac cggaggcgcc gcggtgaccg aaagcttcgg      5400
     cgagtaggtc acacctacat cgggccctgt gtctggggcc atggaagaat acagacacag      5460
     tctaccccgc ttgtcgtacg aggcgactaa aggggtgggg ttgcgaccta cgcatcgcgg      5520
     gcgagcgccc gcggtcaagg cccaccaaga gcctgctgag ccagcgaatc ttgggagacc      5580
     gggcgtgccc tgtcggacat cccaccggtg atggcctacc taacgggggc gagaccggtg      5640
     ccacgggaag ggggggagcc ccactgtccc gagttatgcc cgggccagtg cccctctacg      5700
     ctgggcgggc gtcggcatgc cgtcgggcgc ccagtgccgg tttggtttcg tggtggctgt      5760
     agcgggagct accgtatggt tcaagccaag gctggcaggc gaagtctcca gtgaatggct      5820
     gtaccgccac gggggtgcga atccctttgg cgttgcagtt tctcctgg                   5868
//
ID   R1-1_BM     repbase;    DNA;    INV; 2930 BP.
XX
AC   .
XX
DT   25-APR-2010 (Rel. 15.04, Created)
DT   25-APR-2010 (Rel. 15.04, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_BM.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2930
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(4), 625-625 (2010).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..2918
FT                 /product="R1-1_BM_1p"
FT                 /translation="MTGVLRFLQGNLNHCARAQDLLFQSMAEGLTHLAVVA
FT                 EPYRVPSSPDWAADLEGRVAIIRRCCVGAPPRFXVVERGRGFVAVLWAEVF
FT                 VLGVYFSPNRTLAEXXVFXSELSRVVGRSHSRRXLVLGDLNAKSLXWGSSR
FT                 TCPRGRAVEERLVGSGLLVLNRGAELACVRRLGGSVVDVTFATPDVANRVR
FT                 GWAVMVGEETLSDHRYIRFGVAAPPAESIRGSSLLCGGGAGGPRWAQKRLN
FT                 VERLCEAAVVQAWRLDSLGEPADVCEGVEHLREAMSRVCDAAMPRIRALAP
FT                 KRRVHWWTEEIASQRRLCDVSRRAYQRYRRRRTRRDPDEEDRLYEVYRTAI
FT                 RALRLAIGEAKEAAWNDLLASLDRDPWGRPYRLARNALRRWAPPATSTLPP
FT                 ETLQRVVGGLFPDFTGTAFVPPVMTTARVADGGEPEDVSQAEFDSAVQRMR
FT                 AKRTAPGPDGISSRAWALALTGDGLGPALRGLFSXCLREGRFPEPWKTGRL
FT                 VLIPKEGRPRDEPSGYRPIVVLDEAGKLLERVVASRLVQHLESVGPDLAPN
FT                 QYGFRRGRSTVDAVLRVRHLSDRACSEGGVLLAVSIDIANAFNTIPWSTIV
FT                 ESLRFHRVPPSLRTLIEDYLSGRNVVFPERRGWGRKAVSCGVPQGSVLGPL
FT                 LWDIGFDWVLRGASLRGVDVVCYADDTLVTARGADYRAAAILATAAVSTVV
FT                 SRIRRLGLEVALRKSEAVCFHPVRRGPPPGANLIVGGVSIAVQPKLKYLGL
FT                 VLDSRWRFDHHFGELVPKLLGMAGALARLLPNVGGCSAGVRRLYLGVVRSM
FT                 ALYGAPVWSPALSARNAALLLRAQRALAVRVIRGYRTISREVACALAGSLP
FT                 WDLEAEVAAAVYRRRTQSLSRGRTPGPSAVGRWRRAARHLAYESVVVLRGK
FT                 CFARLFQGVVSREKLGEVKDLGSSLLPFFLSGGAGVRHXPVRYPPRPGIRK
FT                 WIPQR"
XX
SQ   Sequence 2930 BP; 426 A; 886 C; 1020 G; 580 T; 18 other;
     gctcggacgg gctgagagac atcgaatggc gccctgctat gacaggtgtc cttcgattcc        60
     tgcaggggaa tctcaaccac tgcgccagag ctcaggacct tttgttccag agcatggcgg       120
     aggggttgac ccatcttgcg gtggtcgccg agccgtatcg ggtcccttcg agccccgatt       180
     gggcggccga tttggagggc cgagtggcna tcatccggcg ttgttgtgtg ggtgctccgc       240
     ccaggttcgn cgttgtcgag agaggtcgcg gcttcgttgc cgtcctctgg gccgaggtat       300
     tcgtgttggg agtgtacttc tccccaaaca ggacgctcgc cgagttngng gttttccnna       360
     gcgagctcag ccgcgtcgtt gggaggtcgc actcccgacg gatnctcgtt ctnggngacc       420
     tnaacgcnaa gtcattgnct tggggntcct cnaggacgtg ccccagaggt agggcggtgg       480
     aggagcggct ggtcggaagc ggtctcctcg tcctcaatcg cggcgcggaa ctcgcgtgcg       540
     tgcgacgttt gggcgggtcc gtggtcgacg ttacattcgc cacgcccgac gtggcgaatc       600
     gcgtacgcgg ttgggccgtg atggtcggcg aggagacgct ctccgaccac cgctacattc       660
     gtttcggtgt cgcagcgcct ccggcggagt ctatccgggg ctcttccttg ctctgcggtg       720
     gcggcgcggg gggtcctcgt tgggcccaga agcgcctcaa cgtcgagagg ttgtgtgagg       780
     cggccgtagt ccaggcatgg cgtcttgact cgcttggtga gccagcagac gtgtgcgagg       840
     gggtggagca tctgcgcgag gcgatgtcgc gggtgtgcga cgccgctatg cctcgcatta       900
     gagctctcgc tcctaaacgc agagtccact ggtggaccga ggagatcgcc agccagcgcc       960
     ggctgtgcga cgtcagtcgt cgcgcatacc agcggtatcg acgacgaaga acgcgccggg      1020
     accccgacga ggaggaccgc ctgtacgagg tgtacaggac ggcgataagg gccctgcgct      1080
     tggctatcgg ggaggcgaag gaggccgcct ggaacgacct actggcctcg ctggaccgtg      1140
     acccgtgggg gcggccctac aggctggcgc gcaatgcgct ccgccgttgg gccccccccg      1200
     caaccagcac cctgccgccg gagacattgc agcgggtagt cgggggtctg tttccggatt      1260
     ttaccgggac ggccttcgtc ccccctgtga tgacgacggc gcgggttgct gatggcgggg      1320
     agcctgagga cgtctcccag gcggagttcg attcggctgt gcagaggatg cgggcnaagc      1380
     gcacggcncc cggtcccgat gggatctcgt cccgagcgtg ggcgctcgcc ttgacgggcg      1440
     acggcttggg gcctgccctc cgagggctgt tcagcnggtg cctccgtgag ggcaggttcc      1500
     cagagccatg gaagactggt cggctcgtcc ttattcctaa ggagggccgg ccacgtgacg      1560
     agccgagcgg gtaccgccca atcgtcgtgc tggacgaggc cggtaagctc ctcgagcgcg      1620
     tcgtcgccag tcgcctcgtc cagcacctcg aaagcgttgg gcctgacctg gctcctaacc      1680
     aatacggttt ccggagaggt cgctccaccg tggacgcggt cttgcgcgtc cgccacctct      1740
     ccgatcgtgc gtgctccgag gggggcgtgt tgttggctgt gtcgattgat atcgccaacg      1800
     ccttcaacac gatcccttgg agcacgatcg tggaatcgct ccggtttcac cgcgtccccc      1860
     ctagtctccg caccctgata gaggattacc tctcagggcg aaacgtggtc ttccccgaga      1920
     ggagggggtg gggacggaaa gcggtgtcgt gcggggtccc gcaggggtcg gtactgggac      1980
     cactcctgtg ggacatcggt ttcgactggg tcctgcgcgg tgctagcctg cgtggcgtcg      2040
     acgtagtgtg ctatgccgac gacacgctgg tgacggcccg cggagccgac tacagagccg      2100
     cagcgatcct tgcgacggcg gcggtctcca ccgtcgttag tcgcattcgg agattaggtc      2160
     ttgaggtggc cctccgcaag tccgaagcgg tgtgctttca cccggtccgg aggggacctc      2220
     ctccgggagc gaatctcata gtcggcggag tatcgatcgc tgtccagccg aagctcaaat      2280
     atttgggcct cgtgctggac agtcgatggc gcttcgacca ccactttggt gagttagtcc      2340
     cgaagctgct ggggatggcg ggcgcgctag cccgtcttct ccccaacgtc ggtggttgca      2400
     gcgccggcgt ccggcgtctg tacctggggg tcgtgcgcag tatggctttg tacggcgctc      2460
     ccgtgtggtc gcccgcactc tccgcgcgca atgcggcttt gctgctacga gcgcagcggg      2520
     cgctcgcggt gagggtcatc agggggtacc gtacgatctc ccgggaggtc gcctgcgccc      2580
     tcgccggttc ccttccttgg gatctcgagg ccgaggtagc ggctgcggta taccggcgca      2640
     gaacacagtc cctgagtcgg ggacggacgc ccggcccgtc ggctgtcggt cggtggaggc      2700
     gtgctgcgcg tcatctggcg tacgagtcgg tagtcgttct gcggggcaag tgcttcgcgc      2760
     gcctttttca aggcgtagtc tcccgtgaga aattggggga ggtgaaggac ctcggctctt      2820
     ctcttctccc cttcttcctc tcaggaggcg ccggagtccg acatnacccg gtccgttacc      2880
     cccctcgacc gggtatccgt aaatggattc cccagcgtta aaaaaaaaaa                 2930
//
ID   R1-1_BTa    repbase;    DNA;    INV; 7225 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7225
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 716-716 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           650..3193
FT                 /product="R1-1_BTa_1p"
FT                 /translation="MMEENTETNLLLQGFSVPPEPVGRESPPSNGSESAFP
FT                 TDRHQASGQNQTRQIPGPNQPHRRKSTIGEQLRDFLHLGKPKGTEVPRSEV
FT                 SLSHNLEVSDDGNSRRPSIETLIQKEIVSSALGTPPNSRPQATTLPPVPPP
FT                 QAENRTPNRNKRRRKKSLTPPPDSDWRETLAQAAREGKEKIAEMNNRRTLL
FT                 MEHLERSKGRCTKEQRNDVDGVMSELLATIDTLCQALLSACEIRSNQPTLK
FT                 DVDMDSVYTESDTESIFSVAPTTKNNTARSRLKSSPARLQQNVLPVIDISP
FT                 SAPPNRGAAIAETITNAVRGETEKLKQEILKEIVAEIKKILPATLAPPAPQ
FT                 PSVNTTSSTTCPNKETIQPLTLINPTGEGTSQGHQVPPQDHPKRKDATYQK
FT                 NFPPLKRPVHIQVRRVRNEAGASTDTEDDAPSSPKWVQVRSRKSKQATRKR
FT                 TQSTNSRTSATSCRESAAEPPRGPLGTSGSPSTNSNNNGNSRGTNINRKDI
FT                 PSSQPANKRKSKRGRGKKSQSAQTARPAKETDPSTDILVTLKAPLPNATAE
FT                 ETLTALRREINPVREKIEFISIARAKQRDVRVTCATGADALRLQAAINRSR
FT                 SLVGRIQPKALPRIALRGVPADMSDQALMSDVSLLLKELMVPPPKILFRLG
FT                 ARGSRTETRVIEVNPEQRVRLLEGGGRIRCGWTIVRASDHTSMPQCHRCQL
FT                 LGHTQEKCVRAAGQDICRYCADNHASRDCPTKEDPSTYKCHGCAKNKLKGP
FT                 PHMSGDSNRCSYIRQKRTMTRKMVQYTTLPPGIRAICAPPSPGTSVAHASN
FT                 APIVTTSSSTTTPPPEPVPTTNGPQTQMEVDPSSPPPSTGSQPKRQ"
FT   CDS           3199..6444
FT                 /product="R1-1_BTa_2p"
FT                 /translation="MAPRPARPLRIGQANIAHREAEHRLIERRMADHQLDV
FT                 YLVQELLGEQYGFRKWRLLGVSNTPKVIGRISGNSADAAIIVANPDLGVLD
FT                 LSGEYPEYLAVAEIGTGRDRYIFVSVYLSPNDTADAFNSKIEQLTEVVVRF
FT                 QGYPIIVGGDFNSWSSSWSPRQTNTRGATVDAMAIANRLQVENDPNSIPTF
FT                 KNVNGESWPDVTLTGGPASVTNWEVLEDAIDSDHRLIQFQAGIEVPVDRKD
FT                 TFLKPAYEMMNMAAFTDALAVHAERRCPANASKDQIDQEIEDLTLVINEAT
FT                 KAALPRVRKTEHSWWDDELEEAKKNLNRLVRASARCHPDDREIVHQRRKEA
FT                 RRHMRLLLRQKKEDYRSQMRMQSFARDGPWGVVYKLAANKLRRPLPRAPLL
FT                 LPGNETQGSLMKQTLSNTLNRMLPDDTQEGETDYHRGLRDSFHRLPDTPHS
FT                 FPFDAGALRKAAEKLISGKAPGPDGVLAPVLKMALPTIGEWLLSIYVSCQQ
FT                 TGYFPTAWKRGRLATIPKGGEDRDPSNISDLRPLTMLSEMGKMLERLIGLR
FT                 SEEANSEALSDNQYGFRRSRSAVDAIKGVVDFLKDPANGKHRMFISLDIKG
FT                 AFDHAWWPSIMEQIRRKGYPKDIAALWLSYFSDRIVTLSDSGEKAEKRLTK
FT                 GAPQGSVRGPEAWNLIADTLLRKDLPPGCKVFAFADDIGYCIGGNTAAELA
FT                 RKAAVIMGTAEEWARQNKLAFSTGKCWRLIYKNTVRVNRTFLHGEPIPTVD
FT                 SGRYLGVIIDKDLNFEAHAHHVAGKIKRLFMALRRLVPRREANFRCLLDIY
FT                 KGAVLPVATYAAEVWGHRCAVTRAARPLDSAQRACLIGITGAYATTSAPAL
FT                 QVAAGVPPLSMAIQALAARRIGIEQGESDLFGTHLVLPPGSSKAEWKARAE
FT                 LVTVEAWQRAWEAESRGRTTFNFCPTIEERVRLKIPMTPARTQFFTGHGGF
FT                 GCQLVRIGKAIAGLCPDCGVEDNPGHRLDNCPHFATERAEAQQAGLDRSRN
FT                 FVMDLGTVPDAIWVRWSKDRTEEIKDMEARLVALETSSSSSEDSDPDAPDT
FT                 PPMPANRPRRACTANAAYRDIDSSP"
XX
SQ   Sequence 7225 BP; 2006 A; 2226 C; 1816 G; 1177 T; 0 other;
     tgttcagagc tatccaactt gcgctctcca cagagcgagc cctcgcgaca ccgactcgcg        60
     atcacccaac ggcgaactcc gcttcgagtc gcgaaccgat cgagcccaac tcgacctcgg       120
     gcacgaccgg acctcgcgct cgcgctccca cgccttcgcg agccaagtca tcacgttacc       180
     tacctgagtc gccattacac cacctctcca caagagcgag ccctcgcgac acctactcgc       240
     gatcacttca cctctaacgg cgaactccgc ctcgagccgc gaaccgaccg agcccaactc       300
     gaactcgggc acggccggac ctcgcgctcc ccctcgctgg cgtgagccaa gtcaccgagt       360
     tacctacctg agttgctacc gctccacctc ccagcggtcg aacttcgcat cccgctagcc       420
     aaacggctct accacggtac gcaacttacc tcgagccaac caccgacgag cgacagcgct       480
     ccaactcgcg ccgcgcactt aaccaagccc gaccaacgac aagtagccca gcggtgcgcg       540
     attcggaacg cgcacccttc tcacgggcac ggattccgac agcccagaac ctgacgatag       600
     cggaacttag gattttaacg gaaccagggc agccccctat caataatcta tgatggaaga       660
     aaatacggaa acaaacttac tgctgcaggg gttttcggta cccccagagc cggtaggtag       720
     ggaatctccg cccagcaatg ggtcggagtc cgcgttccct acagatcgtc atcaagcgag       780
     cggacaaaac caaactaggc aaattccagg accaaaccaa cctcatagga ggaaaagtac       840
     tatcggggaa caacttaggg atttcctaca cctagggaag cctaagggaa cagaggttcc       900
     ccgctccgaa gtcagcctca gtcataacct tgaggtatca gacgacggca actcgcgccg       960
     tccctcgata gagacactga ttcaaaagga gatcgtgagc agcgccttag gtacgccacc      1020
     caactccaga ccccaggcca ccaccctccc ccccgtccca cctccccagg cggagaacag      1080
     aactcctaac aggaacaaac ggaggaggaa aaagagcctc acccctcctc ccgacagtga      1140
     ctggagggag actctcgccc aagctgcgag agagggaaag gaaaaaatcg cggaaatgaa      1200
     taaccgcagg acacttctaa tggaacacct cgaacgatcg aagggtagat gcaccaagga      1260
     acagaggaac gatgtggacg gggtcatgtc tgaactcctc gccacaatcg acactctgtg      1320
     ccaagcccta ctcagcgcgt gcgagataag atcaaaccag cccaccctga aggacgttga      1380
     catggactcg gtctataccg agtcagacac ggaatcgatt ttttcggtag cccccacgac      1440
     gaagaacaac accgcgcgct cccggctgaa atcatcgccg gccaggcttc aacagaacgt      1500
     cttaccggtg atagacatct ccccctcagc ccccccaaac agaggggcag caatcgctga      1560
     aacaatcacg aacgcggtca ggggcgagac agaaaagtta aaacaagaga ttttaaagga      1620
     aatcgtcgcg gaaatcaaga aaatcctgcc cgcgacgttg gcacctcccg ctccccagcc      1680
     ctctgtgaac accacctcgt ctacaacttg tccgaacaag gagactatcc aacccttgac      1740
     tctaattaac ccaactgggg agggcactag ccaagggcat caagtaccgc cccaagacca      1800
     tcccaagcgc aaagacgcga cctatcagaa aaacttcccg ccgttaaaga gaccggtcca      1860
     catacaggtc cgcagggtga gaaatgaagc cggtgcttcg actgatactg aagacgacgc      1920
     gccctcctca cccaagtggg ttcaggtgag aagccgcaaa tcgaagcagg cgacccgaaa      1980
     gaggacgcaa tcgacaaaca gtagaacgag cgcgacctcc tgcagggaat ccgccgcgga      2040
     gccacctcgc ggccccctag ggacctccgg ctcgccttca acaaacagca acaacaacgg      2100
     gaacagccgt ggcactaata taaaccgaaa agacatacca agctcacaac cggccaataa      2160
     gcgtaaaagc aaacgaggga ggggtaagaa aagccagagc gcccagacgg ccagacccgc      2220
     aaaggaaacg gacccgtcca cggacatcct ggtcacactt aaggcacccc ttccaaacgc      2280
     aacagcagag gagaccctta ctgcgttgag acgcgagatc aacccggttc gggagaagat      2340
     cgagttcatc agtattgccc gcgcgaaaca gagggacgtc agagtaacat gcgccactgg      2400
     tgcggacgct ctccgcctac aagcggcaat aaacaggtcc agatccttgg tagggagaat      2460
     acaacccaag gcgctcccta gaattgctct acggggcgta ccagcggata tgagcgacca      2520
     agcgctcatg tcggacgtct ccctactact caaggagcta atggtccctc ccccgaagat      2580
     actcttcaga ctcggggcaa gaggatcaag aaccgagacc agggtgatag aagtcaatcc      2640
     tgaacaaaga gttcgcctct tggaaggagg tggacgcatc cgatgtggct ggacaattgt      2700
     tcgagccagt gaccacacca gtatgcccca atgtcacaga tgccaactgc tggggcacac      2760
     acaagagaag tgcgtaagag cggcaggcca agacatctgc cgctactgcg cagacaatca      2820
     cgcatctcgg gactgcccca ccaaggagga cccctccacg tataagtgcc acggctgcgc      2880
     caaaaataaa ctcaaggggc cgccacacat gagtggtgac tctaataggt gcagttacat      2940
     acgccagaaa cgcaccatga cgcgcaaaat ggtgcagtat accactcttc cacccgggat      3000
     ccgcgccatc tgcgctcccc cttcaccggg tacgtcggta gcgcacgcat ccaacgcacc      3060
     tatagtaacc acatcatcat cgacaaccac tccacccccg gaacccgtcc ctacaacgaa      3120
     cgggccccaa actcaaatgg aggtggaccc ttcgtctcca ccccccagta ctgggagcca      3180
     acctaaacgc caataaatat ggccccccga ccagcaaggc cgctgcgcat cgggcaggcc      3240
     aatatcgccc acagagaggc agaacaccgc ctcatagaga ggcgcatggc agaccaccag      3300
     ctcgatgttt acctagtcca ggagctacta ggcgaacagt acgggttccg gaagtggcgg      3360
     ctccttggag tttctaacac acctaaggtc atcggaagaa tctcggggaa ctccgccgat      3420
     gctgctataa tcgtcgcaaa tcccgacctc ggcgtcctcg acctatccgg ggagtacccg      3480
     gaatacctcg cggtcgcgga aatcggcacc ggacgggaca ggtacatctt cgtctctgtg      3540
     tacctgtcgc caaacgacac tgcggatgca tttaacagca agatagagca gctgacggaa      3600
     gtggtagttc gtttccaagg gtacccaatc atcgtaggcg gggacttcaa ttcctggagc      3660
     tcctcctgga gcccaaggca gaccaacacc agaggggcaa cggtcgacgc gatggcaata      3720
     gccaatcgct tacaagtcga gaacgacccc aattccatcc caactttcaa aaacgtcaac      3780
     ggagagtcgt ggccggacgt cactttaacc ggcggacccg cctccgttac taactgggaa      3840
     gtccttgaag acgcaataga tagcgaccac cggctcatcc aattccaggc cgggattgaa      3900
     gtccccgttg accgaaagga tacatttcta aagcccgcct acgaaatgat gaatatggca      3960
     gcgttcaccg acgccctagc agtacacgca gagagacgat gtcctgctaa cgcctcaaaa      4020
     gaccaaatcg accaagaaat tgaagacctc acactggtca taaacgaggc aaccaaagcg      4080
     gcacttcctc gagttcgaaa aacagaacat tcctggtggg acgacgaact cgaggaagca      4140
     aagaagaacc ttaacagatt agttagggcg tcggcacgct gtcacccgga tgacagagaa      4200
     atagtacacc agcgcaggaa agaggcgaga cgccacatgc gcctcctcct tcgacaaaag      4260
     aaggaggact accgaagcca aatgcgaatg cagagcttcg cgagggacgg cccctgggga      4320
     gtggtgtaca aactcgcggc aaacaagctg cgaaggccgc tccccagagc ccccttattg      4380
     ctacccggaa acgagaccca agggtcccta atgaaacaaa cgctaagcaa caccttgaat      4440
     cgtatgttac ccgacgatac gcaggaaggg gaaacggact accaccgagg actccgagat      4500
     tcttttcatc gtcttccgga tacgccccac tcctttcctt tcgacgccgg agcgctgaga      4560
     aaggcggcgg aaaaactcat cagcggcaaa gcacctggac cagatggtgt tctggcccct      4620
     gtcctcaaaa tggccctccc aaccatcggg gagtggctcc tttccatcta cgtttcatgc      4680
     caacagacgg gctattttcc taccgcatgg aagcgtggcc gactagccac aattccaaaa      4740
     ggaggtgagg acagggaccc gagcaacata tcggacctca gaccactgac gatgctctca      4800
     gaaatgggca agatgctcga gagactcatt ggtctgaggt cagaagaagc caactccgaa      4860
     gcactatccg ataatcaata cggattcaga agaagtcgca gcgccgtcga tgcaataaag      4920
     ggagttgtag actttctcaa ggaccccgcg aacggcaaac accgtatgtt catcagcctc      4980
     gatatcaaag gagcgtttga ccatgcctgg tggccctcca taatggagca aataagacgc      5040
     aaaggatacc ccaaggacat cgcggccctt tggcttagct atttctcgga ccggattgtc      5100
     accctctccg acagtggaga aaaggccgag aaacggctaa ccaaaggggc cccccaaggc      5160
     tccgtcagag ggcctgaggc atggaatctc attgccgata cccttctgag gaaagatctt      5220
     ccgccgggat gtaaagtgtt tgccttcgcg gacgacatcg gatattgcat cggcggcaac      5280
     acagccgctg aattagcaag gaaagccgcc gtcatcatgg gaaccgccga ggagtgggcg      5340
     cgtcaaaaca aactcgcttt ctcgaccggg aagtgctgga ggctaattta caaaaacacg      5400
     gtacgagtga acagaacgtt cctccacggg gagccaatcc ctaccgtgga cagtgggagg      5460
     taccttggag tcataattga caaggacctc aattttgaag cccacgctca ccacgtagcg      5520
     gggaaaatca aacgtttgtt tatggcgctg cggaggctag tcccccgcag agaagccaat      5580
     ttcagatgcc tcttagacat ctacaaagga gcagtcctcc ctgtggcaac atacgccgcg      5640
     gaggtctggg ggcaccgctg cgctgtcacc cgagcagcca ggcccctgga ctccgcacag      5700
     agagcatgcc tcataggaat cacaggagca tatgcaacga catcagcccc agcactccag      5760
     gttgcagccg gagtcccgcc actcagcatg gccattcagg ctctcgccgc aagaagaatt      5820
     ggcatcgagc aaggggaatc cgacctcttc ggaacgcatc tagttctccc ccctggctcc      5880
     agcaaagccg aatggaaggc gagagctgaa ttagtcaccg tcgaagcctg gcagagggca      5940
     tgggaagcgg aatcccgagg cagaaccacg ttcaacttct gccccaccat agaagaacgg      6000
     gtccgcctca agatcccgat gacccctgcc aggacgcaat tcttcactgg ccacggcggc      6060
     ttcggctgcc aacttgtcag gatcggcaaa gccatcgcag gactctgccc agattgcggg      6120
     gtcgaagaca accccggaca ccgcctggac aactgtccac acttcgccac cgagagagca      6180
     gaggcccagc aagccggtct tgaccggtcg agaaacttcg taatggacct cgggactgtt      6240
     cctgacgcca tctgggttcg atggtcaaag gacagaaccg aggaaatcaa agacatggag      6300
     gccaggctcg tcgctctgga gacgagttcc tcatcgtccg aggactcgga tccagatgcg      6360
     cctgatacac ctcccatgcc agccaacaga cccagaagag cctgcacggc aaacgcagcc      6420
     tacagggaca tcgactcctc accgtgagga aggacagcac cgtggcgcta ggcgtcgcag      6480
     ccggcctgct gtgcaggcga cagagcagcg acccgccctg cgatggcgga taggcctagt      6540
     gcagacccgg tccgcgtttt aggtaaggca actgccgggt gagcgagccc tctgcgaggg      6600
     agcccccagt ctttagtatt aagcactacc tgtcgtacac atatcgacac atgtcgacaa      6660
     atgccccacg acagagccaa gcaataaaca agagatcctg cctctcagga ctaagcctaa      6720
     accaaacctt aacaaaaatc taattcgatc tagtcattcc ctcccctagt ctagaatcaa      6780
     ctgactagac gccgccaaaa cgtgcgtgca gaatccccct gaacacacag agacaagcaa      6840
     aagactcacg actaccccgg actaaggcac accggagtga gggagcccaa gagcccctcc      6900
     ataggcactc aggacgggag cacccagagg gacagcccgt ccaaaccccc ctcaattttt      6960
     cctccggaat aacttcccat ccaaaacata caccccctgg taatgtaaat gagacccccc      7020
     cagaatccct ccccacaatc taagtcaact acacgctgga atagcgttga cggttaatct      7080
     ctaagtgtat tataatttat gtaaactatg tacttgtttt gatggacaat aaaaggaaaa      7140
     atacaaaaga ggggcggtgg gaaaggcgag agagcctttc ccaccgcccc ttttttttaa      7200
     aaaaaaaaaa aaaaaaaaaa aaaaa                                            7225
//
ID   R1-1_CFl    repbase;    DNA;    INV; 4097 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.04, Created)
DT   11-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4097
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Camponotus floridanus
RT   genome.";
RL   Repbase Reports 14(4), 1042-1042 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~88% identical to consensus.
XX
SQ   Sequence 4097 BP; 654 A; 1183 C; 1614 G; 632 T; 14 other;
     cttgggtccg ctgccctgtc agagcggcgg acgacctggc caaagccgcc cgcataagaa        60
     tagagtggac gaccggggtg gaactggcag cggcgcgtcc cacccactgt tttaggtgct       120
     ggggagaggg acacgtggcc tccaggtgca ggggcgccga ggacgggtcc cgcacctgtt       180
     atagatgcgg gacggtgggc cacacggctg catcctgcca ggcggcccct tattgcctgt       240
     cgtgtgcgga ggcggggagg aagacggatc accgggggag gagcgagctg cggactccat       300
     tgggacgggc cccgccgacc cccgctgcgc cctcgcgcaa agggacaagg cgagggggag       360
     cgggagccga ggcgtctcaa cagsggcagc agcagcggca ggaaacagca gcggcaatag       420
     caagcagccc aagaacgccg cggcccttga gggggacagg agggaaagag aaagaggggg       480
     agaaggaggc ggcggaggag aggatggaga taggggacat gatggccaaa ggtaagccag       540
     cgcccctatc tatcctacag gccaacctca accacgcccg ccgtgcgcag gatcttttct       600
     gcacacaatg gcggagcgcg gttgtgggtt gggcgtggcg tcggagccgt acgcggcccc       660
     cccgatcacc cgtcctggtt tccggggggt gcctgggagg ggctgccccc ctggtggcca       720
     tcgtgcgggg ggcgatgaag ggtcgccccc ctgcaggatg gggaccaggg gtcggcactt       780
     cgcgatggtg tggtggggga ccacctgcgt tataggcgta tacctccctc cctcgctgag       840
     cctggcccag tttgaggccg agctcggcga ggtaagaggc ggtgaggagc ggcctccccg       900
     ggccggtcct cgtgatgggc gacttcaact ccaaatctcg gagttggggt tgcccgtccg       960
     aggatcggcg gggagacgct gcgagactgg gcgggtcact ggctgaccct gctcaatgtg      1020
     ggtccggcca catgcgtgag gccgcagggg gagtccatcg tcgatttgac gtgggcctcc      1080
     tctgggtttg cgcatgtggg ggtggagggt ggccctgagc tcgagaccct gtcgatcaca      1140
     ggtacatcga gctcagcttg gcccgacatc cgcccaccgg gccggaccgc gggaggagcg      1200
     taggtggtcc ctcaccaaac tgaacccgga cctcctgatg gcctcgatgc aggcctcgct      1260
     atgggtctgg ggggaggacc ctctggcgtg ggaggaaagg ggtggaggag ttggcatcga      1320
     ggcttcgcag tgctctctgg ggagcctgcg atgcctcgat gccaagggta aggaggggat      1380
     gcgggaggag gtcggcgtac tggtggaccg aggagatgcg aactccgcgt gcggccagcg      1440
     ccgacttcaa gtgttggaag gaggccgtag cgaggctgta ttgagcgggc gcgggaggag      1500
     tgtcgggatg cccggcactc cctcggcgcc gccatcggga ggtccaagac agggcttggg      1560
     aggagctgct cgcctccctg aacgaggacc cgtgggggcg cccgtacaga atggttctca      1620
     ggaaattgag gccgcgggcg cctccgacca cggagtctct ggcccccggc ttccttgggg      1680
     aggtggtgga gactctcttc cccgggggag ccgggggcgc agtgcccttc cccctctcgg      1740
     gccgtatgcc cgagtggagg gagggctggg aggtgacagc ggaggagatg cgggagccgt      1800
     ccggaggatg aagccgaata aggctcccgg tccggacggc atcccgggca agatctgggc      1860
     cctggtcgtg ggtgaagctg gcgggcccct tcacgaggtg cctcagggag ggggtcttcc      1920
     cctccctctg gaaggaggcg agactagtcc tcctcccgaa gggagggagg gaccccgacg      1980
     atccatcggc ttaccgacct ctctgtcttt tggacgaggt cggtaagctg atggagcggg      2040
     tgctggtggg gcgctcaacg agcacctgca gcgggtgcag ggctcaacga gcgccagttc      2100
     gggttccggg cgggccggtc gacatcgacg cgatcgacgt ctgcgggccc gctcggaaca      2160
     gatagtccaa cacggggggg tggcgttggc tgtgtcctgg acatagccaa cgcgttcaac      2220
     accctcccgt gggacagata ggggggggct gcgacgcacg gggtcccgaa ttacctgcca      2280
     gggtaatccg ggactatttc aagggaggag tatctcctac cgcgatgccg agggggtgcg      2340
     caggcggggc ccgtcgtgcg cggtgttcca caggggtccg tcttgggccc gttgctgtgg      2400
     gacatcgcgt acgatgaggt actggggagg gtccttcccc ccggctgcca tgtcatctgc      2460
     tatgcagatg acacgttggt ggtagtcggg gggaaggact ggagggacgc gatcgcgttg      2520
     ggcaacatcg cggtggccgg ggtgttcgcg gcataaaggc gctgggcctg gaggtggccc      2580
     cccggaagac ggaggccgtc ttcttccatg acggctcccg ggccccccca ggctcacatt      2640
     tagggtggac ggccatgacg tccaggtggg gacccggatg aatatctggg tctccacctg      2700
     gatggcaggt ggaccttcga ggagcacttt gcccagctgg cccccaggat ggggggggta      2760
     gcggcctcgc tggcgaggct gctgcccaac ctgggggggg ccggacggcc gtgtccgcaa      2820
     gcttatatgt gggcacggtc ggatcggtgg ccctttacgg ggcccgatct gggcgggtgc      2880
     tgcctcgagg tccaacagga tcaggggcgt gctgcggggg gcacaccgcc ccatagtttt      2940
     aagggccgcg cgcgcatacc gcacgtcgcg tatgcggcgg cgacggtgct ggcggggtcc      3000
     ccccccctgg agctcctggc ccggsccggg csgmcgcgta ctgggggagc tccgtgggga      3060
     ggggaactat ggtggggccg ggggccaaga gggccatcag gccgtaaggc ggcggactcg      3120
     gtcctcgtgg actggcagcg gcaattagcc gggccggccc acgaggacca aagagtggtg      3180
     ggggccgtcc tccctgtctt cagggagtgg mtggggagga cctgggggcg catcaccttc      3240
     cgggtggcgc aggtggtgac cgggcatggt tgcttcggtt actacctgtg ccgcatcggg      3300
     agggaggcga cccccgggtg ccaccactgc ggggaggacc gggacacggc gcagcacact      3360
     ctcgaggcct gtccggcctg ggaggtgcag cgccgtgccc tggccgcggt ggtgggggma      3420
     gacctctccc tccgcgccgt ggtgcgggcc atggtgcggg gggaggagca gtggmgggcg      3480
     gtggcctcct tttgcgagga ggtcatgmgg accaaggagg aggcggagag ggatcgkcgg      3540
     mkgatgccgc ccccacgggg aagcgcagga tgtcgcggcc cggaggacgc ggcgggggag      3600
     gaggaggctg mctgggcctc caggccccag cgcggacggg actgatggga gaggggccct      3660
     gttggggscc caccccccct tcactgcagg ctaggcggac aggtgggggc tagagggagg      3720
     ttccggggct ggcagggcct gatggcctac ctggtggccc ccctccctcc ccccaccacg      3780
     gcataggaag aggccccgtt caggggccgc ggcgaggggg ccccggtgtg gagcggggag      3840
     atctcccacc gggacagaac cccattagac ggagccggga ggcggacggg tgtcctccct      3900
     cccggctaca acggagggat tgcggtgggg gggtcgcgga agaatgcccg tggcgtgccc      3960
     gtggcccccc ctccgtgaca ccgcggtgga ggacacccgc aggggtttta gccggtagga      4020
     gtccggcata accctctctc cctccccgag gagaggggta tscatgaggc atttcccctg      4080
     cgtatcaaaa aaaaaaa                                                     4097
//
ID   R1-1_CoFl   repbase;    DNA;    INV; 5592 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5592
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2381-2381 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. It appears inserted into
CC   microsatellties.
XX
FH   Key           Location/Qualifiers
FT   CDS           921..1874
FT                 /product="R1-1_CoFl_1p"
FT                 /translation="MALISTTKGGWEGETDERVYPFIKDPVEKPDQGGELD
FT                 VAADAAFDDLARALDELRALMVRHPNTAGTIKTNVVAAVTAMGVLRRLQER
FT                 VREKEELPLSNNQAKAKNAGKRKRGRGGETPSPQLTPGKAVKKAKGAGPQL
FT                 KPESVPAEVPAEKAEWTKAQRKGKKEKKEAKGNKPQEGTEKTPKVAKERRP
FT                 RVRPEAILVVPAQGKKYAEVLALMKKVDVTGLGASVGSVRETRTGGVLVEL
FT                 KNTESKHRDAFAEAIKSAVADAGGVRTLAPRSAWEIRDVDPTVTEGDVEAA
FT                 VKGCFDEGASPVWLCGCLLEQTEETA"
FT   CDS           1878..5201
FT                 /product="R1-1_CoFl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="PTSRYLRRRPRFSKRGTTLGWAGLTAGCDKRSQLSVA
FT                 SGAWASGTLRGSVAGPTGPGRAGGAVKRVTWHETARERSELFPVRKRGPET
FT                 GHQTCRWDCRVWGPSGACSDDSAEMALILQVNLDRTVLAHDLLDQFSRARG
FT                 VDMLFISEPSRTLPGRGWFCDRTRGAAILIRSDKFSVSDTGGGDGFVWIRC
FT                 GSVFYVSCYISPNISIGVFRERLAELEDTVRVCRESGDVVLAGDFNSKAIA
FT                 WGEPRTDPRGRAVLEMAARLDLIVMNSGGSATFRRPGNRGTIIDLTLVSSE
FT                 MAARVSDWQVLEDYTASYHQYVSFVIHEDRGAASRDVIRRRVNGWNVAKLN
FT                 RDLLLEAMVGAPPPADLNKIKNQAEAEALVSGTTRRVKEWCDACMPKRSAG
FT                 RGRRSCYWWTEDIADLRREAQHLRRLAQRHRTREGAGAAAAAYKEAKRALV
FT                 RAIKVSKNRCWRELIAEVDKDTWGLGYRIALKRLRGSDPAPPMEPSFLERV
FT                 VSCLFPEHPARRREDISVGQVPLFTLEELRSVASETPGRKAPGPDGVPSEV
FT                 LKIIAAEKPHVLLDMFNACLRVGLFSRRWKIQRLVLLDKGKPPPLVPSSFR
FT                 PLGMLNNAGKMLERLIRTRLRGEVSLSENQYGFRKGRSTVMAVAEVLESVE
FT                 EAWKPSHKTRSVCVLATLDVKNAFNSAKWSDIMRALKRQNVPDYLRKILDS
FT                 YLQDRVLRYDTKDGPKERRLTSGVAQGSALGPDLWNLVYDELLRLEMPPGV
FT                 KLTGFADDIALHVTARSREEAERKIRWAVAIVSEWLRDHGFELAVGKTEMV
FT                 VLTRQRWFGGDFRLSVAGEVICASPVVRYLGVWIDSRLTFGEHIRRAADKA
FT                 AGVSGALSRLMPNVGGPREAKRRLLASVSNSILLYGAEVWADALARKDLRE
FT                 RLTSVQRIGSLRIACAYRTVSSAAAMVIARTIPVVLLARERRRKFLGSGDQ
FT                 SDSDRREETLTTWQQEWDRAVVGRWTHRLIPDLRPWVERGHGEVNYHLTQF
FT                 LSGHGQFDAYLHRMAVRASPRCSYCPALDDTVEHTFFVCERWHRERQQLVD
FT                 GIGVAPTPETIISEMLSSEEGWTAVDGFVGSVLRQKKEEERAAVQVAGAPE
FT                 "
XX
SQ   Sequence 5592 BP; 1247 A; 1400 C; 1865 G; 1079 T; 1 other;
     cccgggtatc tctaccgctg ataaagtcgg acgtccgaaa acaaaaaaga tgtggcgatc        60
     cttttaacta aggaatctgg ccattgacgg actacatgga gggcacctta gtgcacacca       120
     gctggtactc tttcgctcgg ccggtgttaa cgatgtggtg gttgtattcg cctcggatcg       180
     tgggctgggg ctggcatgaa gcaggagaac cacaccctac actttcacaa taccttatca       240
     cctagtttgc tatttctggg aactcctaaa aagtagtccc tagccgaggg cagaaggctc       300
     gccgtgtttg ccgtgcggtg cgacccgtga gcggccaaag ggagatcctg ggcagtaagg       360
     cgatacctag gctgcgtgcc gaagtgaccc gagctgtctt tggctcctgc tgactgcaag       420
     acgggaggcc ggattcttaa ccaggtccgg tcaatcggct aacactgggc aggtcgcggc       480
     ccggggcggg ctggtcgcgc tgctgctgcg gccttgcggg cttggcgggg ggcctgttgg       540
     gctgggtggg tgtgggggcg tggcagtttt ctgcttagct cctgctcctt ttcggcttcg       600
     cggttcctcg ctgggctcgg gggattgctg tcgtggcgtt tctggcttgc tcctcttcgt       660
     ggctccctca gtgtggtgag tgcgttctgc cgcgtgatgt ctgccggaaa ctctccagag       720
     agtggatcgc ttctggttgg ggcgtgatgc tcgagggagt ggaggtgggc tagggcggca       780
     gggcgtgcta tatctcgggg ttacccaccc ggaccgaaac cgcccttcag acatgtgttg       840
     ggggcggccg gcggcctcca ccggtgaggg atccagatgg gtcggtgggg accttgggat       900
     gaattttgtg tgttttagat atggcgctaa tttcaacaac caaaggagga tgggaaggag       960
     aaacggatga gagggtatac cctttcatca aggatcccgt ggagaagccc gaccagggag      1020
     gagagttgga cgttgctgct gatgcggcgt tcgacgacct agccagggcc ttggacgagc      1080
     ttagggcgct catggtgagg caccccaaca cggcaggcac cataaagacc aacgtcgttg      1140
     cggcggtgac tgccatgggt gtcctgaggc gcctccagga gcgggtaaga gaaaaagaag      1200
     aactgcctct aagtaacaac caggcaaagg ctaaaaatgc aggaaaaagg aagcgaggac      1260
     gagggggaga aaccccgagc cctcagctta cgccaggtaa ggccgtgaaa aaggcaaaag      1320
     gggctggacc tcagctgaaa ccagagagtg ttccagcaga ggttccagcc gagaaagctg      1380
     aatggacgaa ggcccaaaga aaggggaaaa aggaaaaaaa agaggctaag gggaacaagc      1440
     cccaagaagg tacggagaaa acccccaagg tcgcgaagga gagacgtccc agggtcaggc      1500
     ctgaggcgat attggttgtg ccagcccaag gcaagaagta tgccgaggtc ctggccctga      1560
     tgaagaaggt tgacgttacc gggctcgggg cgagcgtggg atctgtcagg gagacgagga      1620
     cgggaggtgt cctcgtcgaa ctgaaaaata ctgagtccaa gcaccgcgat gcgttcgccg      1680
     aggcaattaa aagtgccgtg gcggacgcgg gtggtgtgag gacactggcc ccgcgctcgg      1740
     cctgggagat aagggacgtc gacccaacgg tgacagaggg ggacgtcgaa gcagcagtaa      1800
     aaggctgctt tgacgaaggg gcgtcccccg tatggctgtg cggttgtctt ctggaacaaa      1860
     cagaggaaac cgcatagcct acgtcgaggt acctgcgacg gcggccccga ttctcgaaaa      1920
     gagggaccac attaggctgg gctgggttaa ctgcaggatg cgacaaaaga tcacagttga      1980
     gcgttgcttc aggtgcctgg gcttcgggca cattgcgagg cagtgtggcg ggcccgacag      2040
     gaccggggcg tgctggaggt gcggtgaaaa gggtcacgtg gcacgaaact gctcgagaaa      2100
     gaagtgagct gtttcctgtg cgaaaacgtg gtcccgaaac cggacaccag acatgtcgct      2160
     gggactgccg ggtgtggggc ccctcgggcg cctgcagtga cgactcggcg gaaatggcgc      2220
     tgatcctgca ggtaaacctg gataggaccg tgctcgcgca cgatctgctg gaccagtttt      2280
     cccgtgcccg gggtgtggat atgctcttca taagtgagcc atcccgcacg ttaccgggcc      2340
     gaggctggtt ctgcgacagg acaagaggcg cagccatcct gattcgcagc gacaagttct      2400
     ccgtatccga taccggaggt ggagacgggt tcgtgtggat caggtgtggt agtgtttttt      2460
     atgtgagttg ctacatatcc cctaacattt cgattggtgt cttcagagag cggcttgccg      2520
     aactcgagga taccgtccga gtgtgcaggg aaagtggtga tgtagtcctg gccggcgact      2580
     ttaactccaa ggccatcgct tggggggagc cgagaaccga ccccagagga cgggcggtgt      2640
     tagagatggc tgcaaggctg gatctcatcg tcatgaactc tggtggttca gcaacgttca      2700
     ggcgacctgg taaccgggga acgatcatcg atctcacgct ggtgtcgtca gaaatggcgg      2760
     cacgggtctc cgactggcaa gtcctggagg actacacggc cagttatcac cagtacgtca      2820
     gcttcgtgat acacgaggat cgtggtgcag cttcgcgaga tgtaatccga aggcgcgtta      2880
     acgggtggaa cgttgcaaaa ctcaaccgag atctgctact ggaagccatg gttggcgcgc      2940
     cacctccagc cgatttaaac aagatcaaaa atcaagcgga ggctgaggca ctcgtgagtg      3000
     gcactacgag acgggtcaag gaatggtgcg acgcgtgtat gcccaaaagg tctgccggga      3060
     ggggtcgacg ttcgtgctac tggtggaccg aggacattgc tgacttgcgc agagaggcgc      3120
     agcatctacg gcgtcttgca cagcgacaca gaactcgcga aggcgccggg gcagctgctg      3180
     ccgcgtacaa ggaagcaaaa agagcgctgg tgagggcgat caaggtgagc aagaaccgat      3240
     gctggcgcga gctcatcgcc gaggtggata aggacacgtg gggcctgggc taccggatcg      3300
     cgttaaaaag acttcgcggt tcggacccgg cgccgccgat ggaaccttcc ttcttggaga      3360
     gagtggtctc ttgcctcttt ccggagcatc ccgctaggag gcgggaggac ataagtgtag      3420
     gacaggtacc tctcttcact ctcgaggaat tgaggtcggt ggcatcggag acgccggggc      3480
     gaaaggcccc tggtccggac ggggtgccgt ccgaagtcct caagataata gctgcggaaa      3540
     agccacacgt tttgttggac atgttcaatg cgtgcctgcg cgttggactg ttcagcaggc      3600
     gttggaagat ccaaaggctt gttcttctgg acaagggcaa accacccccc ctggtcccgt      3660
     cgtcattccg acccttaggt atgttaaaca atgctggaaa aatgctagag aggctgatca      3720
     gaacccgctt gagaggagaa gtcagcctct cagaaaacca gtatgggttc cgtaaggggc      3780
     gatcgacggt tatggctgtg gccgaggtcc tcgagtcggt cgaggaggca tggaaaccct      3840
     ctcataagac gaggagcgtc tgtgtcctgg cgactcttga cgtgaagaat gccttcaact      3900
     cggcgaaatg gtccgacata atgagggccc tgaagcgcca gaatgtaccg gactacctga      3960
     gaaagatcct ggacagttac ctccaggatc gagtactccg gtacgacacg aaggatggac      4020
     caaaagagag gcgtctgacg tcgggagtcg ctcagggatc tgcccttggc cccgatctct      4080
     ggaacctggt ctacgacgaa cttttgcgcc ttgaaatgcc tccgggggtc aagctgacgg      4140
     gctttgctga cgacatagca ttgcacgtca cagcgagatc gcgagaggag gccgagcgca      4200
     aaatacggtg ggcggtcgcg atagtgtcgg agtggctccg ggatcacggt tttgagctag      4260
     ctgtaggaaa aacggagatg gtcgtcctca ccaggcagag gtggttcggg ggtgactttc      4320
     gcctgagcgt tgcgggtgag gtaatctgcg cgagtccggt ggtgcgctac ctcggagtgt      4380
     ggatcgattc acgactcacc ttcggggagc acatcagaag agcagccgat aaagccgctg      4440
     gggtctctgg ggcgctttca cggttaatgc cgaacgttgg gggcccgcgg gaagccaaaa      4500
     gacggctcct tgcgtcggtc tccaactcga tcctgctgta cggcgcggag gtgtgggcgg      4560
     acgcactcgc gaggaaggat ctccgagagc gcctaacttc ggtgcagcgc atcggatcct      4620
     taagaatcgc gtgtgcctac cgcacggtct cctccgctgc cgctatggtg atagcacgaa      4680
     cgatacccgt cgtgttgctt gcgcgggagc ggcgaaggaa attcctgggc tccggcgacc      4740
     aaagcgatag cgacaggcgg gaggaaacgt tgacgacgtg gcaacaggag tgggatcggg      4800
     ctgtagtggg tagatggacg caccgcctga ttccggacct gcggccatgg gtggagagag      4860
     ggcatggaga ggtaaactac cacctcaccc agttcctctc cgggcatggt cagttcgatg      4920
     cctatctcca ccgcatggcg gtgagggcat cacctaggtg ttcttactgc cctgcgttgg      4980
     atgataccgt cgaacatacg tttttcgtgt gtgagagatg gcaccgtgag cgccagcagc      5040
     tggtggacgg gatcggcgtg gcgcccactc ccgaaaccat catctctgag atgctcagca      5100
     gcgaagaggg gtggacggca gtggatggct tcgtcgggtc agtcctccgg cagaagaaag      5160
     aagaggagag agccgccgtg caggtagcgg gggcccctga gtgaaggatg cggactcaag      5220
     ctgcgatgag tatttatact catcagcaag gggaagcatc attgaagcgc tagaagacgg      5280
     gtgccggtcc tcagggaccc cgagtccttt tcaggactcg agaggactgg cacctctagc      5340
     aactggtggc gagcttgctc gctaatgctg tgagacgcga tgktctccct ggtggctcca      5400
     ccctgaagta atgctaacgc ggttccgggg tggatcaaaa gccacgcggc atgggggggg      5460
     gttttagtgg gtatgggtgg tctaataaaa aaaatccacc gagtcccaca ctaccgctgt      5520
     ccctgcggtg tgcctcaatg catttcccct ccctccacaa aaaaaaaaaa aaaaaaaaaa      5580
     aaaaaaaaaa aa                                                          5592
//
ID   R1-1_DAn    repbase;    DNA;    INV; 5094 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5094
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 398-398 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           715..1938
FT                 /product="R1-1_DAn_1p"
FT                 /translation="MXPPPISGIRVDQYRSGTQEMGKASLEDLGKEITLLV
FT                 EMLEDGKRRSIHQPMRDVIESIRTLYERLAAQKDEQGGKEAPKTHQASQTS
FT                 PLFRPVAEPRRKGVGPNPPSTKRSRREPSHAATQTRAGTGQPGQPTEPDPG
FT                 TQRTKDAPKWKLVGPKKGKNQRRPNPAPKEKPKPDALVITAKGEASYADIL
FT                 RRVKQDKKLQELGEAVTRIRRTQKGELLLQLKKSGEDTAGYRALVTESIGD
FT                 EVEVRSLSHKIEIECRDLDEITTREEVAEAIGKLVETPGLPETDILLRKSF
FT                 GQTQTAIIRMPAGSARKVLDIGWVKVGWVRCRLRERTRVIKCYRCLEFGHM
FT                 AKQCQSAIDRSRMCRRCGKDGHMAKNCAEEPKCAFCTSAGKDAGHVAGSGK
FT                 CPIFRSALLNTKKK"
FT   CDS           1938..4898
FT                 /product="R1-1_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRCTQINLNHCEAAHSLLRQAVIDGGTQVVLISEPYR
FT                 SIPGNGWLSSSCKGAALWSTETAPQDTRTSCEGFVRASIKGVTFYSCYAPP
FT                 RWDISRFQRMLRSLVSDARGRSPVVIGGDFNAWSPEWGSRVANERGISLLE
FT                 HFATLDVVLANRGQKWTFNKAGRGSIIDITFISSALIRKCDWEVSDSFTFS
FT                 DHQAIHFTLGGVSRKWIPKVTGPKWKDKSLDREAFSVALQTHDWTQPSSPE
FT                 ESANDLSRSIAAACDCAMPTRTRCRRRASVYWWNQDIQRLRTACLRARRRY
FT                 QRARVAEDRITKMEEFKAAKKALKLAIKASKRECFRRICDEAQVDPWGTAY
FT                 KVVMKKMKGQEYLRPTCPILLRKIVESLFPKHPPKREILIAGDAEPFTPVS
FT                 EEEVRSYAKKIGTRKTPGPDGIPNAALKQAMEEKPEVFAETFNKCLQRGTF
FT                 PKNWKIQNLILLPKGNKPTDDPSGYRPICLLDTVGKVLEMTIATRISKTIE
FT                 EKGALSGNQYGFRKARSTIDAIKAVTDMAEAAIAGSRWRWGDKEYCAMVTL
FT                 DIRNAFNSANWTRIHRALFLAGTPVYLQRIISSYLSDRTLLYETEEGTKRY
FT                 EVTAGVPQGSVLGPLLWNIMYDEVLRIELPEGCKLIGFADDLALMVVAKET
FT                 KEVETKANNAIKCISAWMADSGLDLAAHKTEAVLFTSRKKVEHITIQVGNC
FT                 PIRSKDAIKYLGVMLDNRLSYGAHVDYVTKKSAGIQGALSRMLPNIGGPKE
FT                 GRRRLLASVVTSVLLYAAPIWAASVRGNLGLKRKLGASYRLAALRVISGFK
FT                 TISEDAALVLAGMIPIDILATEAEEIYKSIQQEGSTAPREAIKRSARQWSL
FT                 SIWQERWDSATKGRWTHRLIPNLQEWIGRDKGQVSYQLTQFLSGHGGYRKY
FT                 LHRIGHEESPECPNCPGADEDPEHILYMCRRYRARAGALPAPEHLIRYMCK
FT                 AEEQWNRVSQVIAYTQGDLRRLENERRLRENA"
XX
SQ   Sequence 5094 BP; 1452 A; 1288 C; 1492 G; 856 T; 6 other;
     ccccccccgc ccggcagcgg gggcttagaa tactaccggg gcttgacctg gtttgtcgta        60
     agaggcgact aacaggtacg ggggatgwcc ctgctggacg aagttttcca tccaggccga       120
     tagtctgatg gccaagcttc caagtcacgc agggaaagtg cagctcgcaa cctttctcct       180
     tcaggaaagg tatccccccc cactgtggga aaatgcgaga aggcgactag ggccgagtcc       240
     agtaacaccc taggatagga cactggacca acgagatagg aaagatgaac cctgggctga       300
     caggcagccg tattctggca ccttagtatg cggagtgaac tcccgctgaa atggctgtcg       360
     ggctaatgcg gcttctgccc ccgtcccgct aaaatctggc aaatcttcga aaacgctcct       420
     taggcgtcgc cactaagctg gccgtgcagg ctcagatgga ccatacctga ccaacgcgga       480
     tctggctctg aactcttcac ctcgtaaggg ctagagtcaa ccctagcatg gacctcactg       540
     caagcaaagg taaccatggg atcaaccacg cgactgcaca acacctaagg acaacggatc       600
     aggagttggg acccwacaac atgagtaact caaatagcaa caaaaataat gtagacggag       660
     aagcagcctt cgcgaaaagc tgcaaactcm cgagatcacc cagcagcagg ctggatgtwg       720
     ccccccccca tttcagggat ccgcgtggac caatacagga gcggaaccca ggagatgggt       780
     aaagcatcgc tggaggacct cgggaaggag atcacgctgc tggtggagat gctggaggat       840
     ggaaaamgga ggtccatcca ccagccgatg agggacgtta tagagagcat ccgtactctc       900
     tacgagcgac tggctgccca gaaggacgag caaggwggca aagaggcgcc gaaaacccac       960
     caggcgtccc agacgtcccc cttatttcga ccggtggcgg aacccaggag gaagggtgtt      1020
     ggacccaatc ccccgagcac caaaaggagc aggagggagc cttcgcatgc ggctacgcaa      1080
     acgagggccg gaacaggaca accagggcag cctacggaac ccgatcctgg tacccagagg      1140
     acgaaggacg cccccaagtg gaagctggta ggcccgaaaa agggcaagaa ccagcggaga      1200
     cctaacccag cgcccaagga gaagccgaag ccggacgcgc tggtcatcac ggccaagggc      1260
     gaggccagct acgccgacat cctgcgacgg gtgaagcagg acaaaaagct gcaggagctg      1320
     ggagaggccg tcacaaggat aagaaggacc cagaaaggag aactccttct ccaactgaaa      1380
     aaatctggag aggacaccgc ggggtacaga gcactggtta cggaatcgat cggagacgag      1440
     gtggaagtgc gctctctgtc gcacaagata gagatcgagt gcagagatct ggacgagatc      1500
     accactaggg aagaggttgc agaagcgatc gggaagctgg tagaaacgcc aggattgcca      1560
     gagacggaca tccttttaag gaagtcattc gggcaaacgc agacagccat aatcaggatg      1620
     cctgcgggga gcgctaggaa agtcctagat ataggttggg tgaaggtagg ctgggtgaga      1680
     tgtagactca gggaaaggac ccgagtcata aaatgttata ggtgcctgga gttcgggcac      1740
     atggcgaaac aatgccagag cgctatcgat cgctcacgca tgtgccggag atgcggcaag      1800
     gacgggcata tggccaaaaa ctgcgcggag gaacccaaat gcgcgttctg caccagcgct      1860
     gggaaggacg cgggacacgt ggctggaagt gggaagtgcc cgatatttag gagcgccctc      1920
     ttaaatacga agaaaaaatg agatgcacgc aaataaacct caaccactgc gaggcagcac      1980
     actcgctgct aaggcaggcg gtcatagacg gcggaacaca ggtcgtcctc atctcagagc      2040
     cgtacaggag catcccagga aacggatggc tttcaagcag ctgcaaggga gcggccctat      2100
     ggtcgacgga gacggcccct caggacacta ggacatcctg cgaaggcttc gtccgagcca      2160
     gcataaaggg tgttaccttt tatagctgct acgccccgcc gagatgggac atttcgcgct      2220
     tccaaaggat gctgaggagc ctagtttcgg acgcaagagg cagatcgcca gtggtcattg      2280
     ggggagactt caatgcttgg tctccggagt ggggaagcag agtagccaac gaaaggggca      2340
     tcagcctctt ggagcacttc gcgaccctgg acgtggtcct tgccaatcga ggccaaaagt      2400
     ggaccttcaa taaagcaggg cgtgggtcga ttatcgacat aacattcata agcagcgctc      2460
     taataagaaa gtgcgactgg gaagtcagcg actcttttac tttcagcgac caccaagcca      2520
     tacactttac ccttggaggg gtaagtagga aatggattcc caaggtgaca ggaccgaaat      2580
     ggaaggacaa gtccctggat cgagaagcat tctcggtagc tctccagacg cacgactgga      2640
     cccaaccatc atctccagag gagtcagcaa acgacctatc gaggtctata gcagctgcct      2700
     gcgactgcgc catgcctacg aggacacggt gcagaagaag agcttcggta tactggtgga      2760
     accaggacat ccagcgactc aggactgcct gcctgcgagc aaggaggcga taccaaagag      2820
     caagggtggc agaggatcgg atcactaaaa tggaggaatt caaggcagcc aagaaggccc      2880
     tgaaactggc aataaaagcc agcaagcgag aatgttttag gaggatctgc gacgaggcac      2940
     aggtggaccc atgggggacc gcctacaaag tagtcatgaa aaaaatgaaa gggcaggaat      3000
     accttaggcc aacatgcccc attctactaa ggaaaatagt agaatcgctg ttcccaaagc      3060
     atccgcccaa gcgggaaatt ctaattgccg gagacgcgga gcccttcact ccagtttcgg      3120
     aagaggaggt cagaagctac gcgaaaaaga tcggcactag gaagacccca gggcccgacg      3180
     gaatcccaaa cgccgcccta aaacaggcaa tggaggaaaa accggaggtc ttcgcagaga      3240
     ccttcaacaa gtgcctccag cgaggcactt ttccaaaaaa ttggaagatt caaaatctta      3300
     ttttgctgcc gaaagggaac aagccgactg acgacccatc aggatacagg cccatatgtc      3360
     tcttggacac ggtagggaaa gtcctcgaga tgaccattgc cacgcgcatc tcgaaaacca      3420
     ttgaggaaaa aggagcgctc tctgggaacc aatatggatt ccggaaggca cgctctacga      3480
     ttgacgcgat caaggcggtg accgacatgg ctgaagctgc catcgcagga tctaggtgga      3540
     gatggggcga taaggagtac tgcgcgatgg taacattaga catccgcaac gcctttaact      3600
     cggcaaactg gacacgcatc cacagagcct tattcttggc aggaaccccg gtatacctgc      3660
     aacggataat ttccagctat ctctcagaca ggacactgct ctatgagacg gaggaaggaa      3720
     cgaaaaggta cgaggtgaca gcgggtgttc cacaaggatc ggttctcgga ccgctcctat      3780
     ggaacatcat gtacgacgaa gttctcagga ttgagcttcc ggagggatgt aagctcatcg      3840
     gcttcgcgga cgacctcgcc ctgatggtgg tggccaagga aaccaaggaa gtagagacca      3900
     aggcgaacaa tgcgataaag tgcatttcgg catggatggc ggactcggga ctagacctgg      3960
     cggcgcacaa aacggaggcg gtcctcttca caagcaggaa gaaggtggaa catatcacca      4020
     tccaagtggg caactgccca ataagatcta aggacgcaat aaagtattta ggagtcatgc      4080
     tggacaacag gctgtcttac ggagctcacg tggactacgt gaccaaaaaa tcagctggaa      4140
     tccaaggagc actatctcgg atgttgccaa acattggagg cccaaaagaa ggcaggagac      4200
     gccttctggc cagtgtcgtc acgtcggtcc tactgtatgc agcgccgata tgggcagcat      4260
     cagtcagagg aaacctaggg cttaaaagga agctaggcgc atcgtaccgg ctcgcagcgc      4320
     tacgagtcat atcgggcttc aagacgatct cggaggacgc agccctcgtc ttggcaggaa      4380
     tgatccccat agacattctg gcaaccgaag cggaggagat atacaaatcc atccaacaag      4440
     agggaagtac ggcaccccgg gaggccatca agaggtccgc ccggcaatgg tcattatcca      4500
     tttggcagga gaggtgggat tcagcgacca aaggaagatg gacgcatagg ctaatcccca      4560
     acctacagga gtggatcgga agagacaagg gccaggtgag ttaccaactt acccagtttc      4620
     tttcaggcca cggggggtat agaaagtacc tccacaggat cgggcacgag gaaagcccag      4680
     aatgccctaa ctgcccagga gcagatgagg acccagagca catcctctat atgtgtagga      4740
     ggtaccgtgc aagagcagga gctctaccag ctccagagca cctaataaga tatatgtgca      4800
     aagcagagga gcagtggaac cgggttagcc aggttatagc ttatacacag ggcgacttaa      4860
     gaaggctaga aaatgaacgt cgcttaaggg agaatgccta ggttaggcaa cccttccccg      4920
     cgaagtaata ccttacagtg gttccgcggg gtctgtggtg tgtgcggggg tggttttagt      4980
     acgtaggcac tggctagaca cgccggtgaa tcgtgcatac tattggtacg ggccaatagt      5040
     atctaggata gatttccacc tcaatggcgc aatccaaaaa aaaaaaaaaa aaaa            5094
//
ID   R1-1_DAzt   repbase;    DNA;    INV; 4218 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila azteca genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-4218
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 875-875 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.3% identical to consensus. It looks a part of large repeat
CC   array. ORFs are broken.
XX
SQ   Sequence 4218 BP; 1012 A; 1039 C; 1238 G; 928 T; 1 other;
     cacatgccca gcgagtagca tagtcgcggc aggatactcg gccattatcg cggaaatgtc        60
     ttccgtaagg atggctgtga tcgaggcagt attaagaggt caaatgccaa cggaggcctc       120
     catggcaata ctcgccgcag ccaacagata cgacgagttg gtcatggcac tggctggaga       180
     aaaactgcgc ctagaggaaa aagcacggat cccgcttcca ctgaaaccca tcgctgctcc       240
     accgatcgcc aagccacgcg acacctggtc tgctctaata cagagcaaag acccgaagga       300
     gacaggtaag caaatagttg agcgggttaa gaagactgtg gtgccgaatc tcggagtacg       360
     agtacacgaa gttcgcgagc tgaagagcgg aggagcgatt attcgcactc cctcagtcag       420
     cgaattggaa aaggttgtgg ccagcacaaa gttctccgaa gcaggcctca aagtgaggaa       480
     gagcccggag gccaaacctc agattatggt ctacgacgtt gacacgtcca tcccacctga       540
     gaagttcatg gaggagctct attcaaagaa cctggaggaa gtaatgactg ccgccgagtt       600
     caagaagtcg gttcacctgg gcaacaaacc ctggtcggtc accaacggca ccatggtcaa       660
     cgtgacgctg gaagttgata cgaaggcaca agaggcactg cgagaatgtg tctacatcaa       720
     gtggttccga tgtcgctgcc gttccctggt gcgaacgtac gcctgtcaca ggtgtgcagg       780
     cttcgaccac aaggtgtctc agtgtcgcct taaagagaac gtgtgccacc ggtgtggaca       840
     gaacggccac aatgttgcac gatgccctaa cccggtggac tgccggaact gccgcttcaa       900
     gggatacccg tcagcacact ccatgctgtc agcggcttgt cccatctatg ctgcggtatt       960
     ggcgagggtg caagctagac attaatgttt agcttaatcc aagcaaattg tggtcgtggc      1020
     cgagcggccg tgatggaact cggatccatc atacgcagct ccggtcgtct gttcgcactg      1080
     gtccaggagc cgtacgtcga tggagcaggg cggatttttg gcctggaatg cgagtgttcc      1140
     aggagtgttc cagccgcact cccgtcatct ttgggctaga cgcgaatgca gtacccccgg      1200
     cgtggtttag caaactctct gagcatgctc gggggcaagc tagctatgtg cggggtgagc      1260
     tgctatctga gtgggtacta gagaaccgag ccggggtgct caatttagcc agtcggacgt      1320
     ttacgttcga taaccgcaga ggccaaagtg acatcgacgt aacaatcgtc aaccaagccg      1380
     cgactatgtg ggccacatac gattgggaag tgagggaatg ggacaccagt gaccacaaca      1440
     taatacatgt tgaagtcacg cctggtgtta ccgatgcagt cgagtacatt actcctgtgc      1500
     cgtcctggaa gctttccaat gcgcgctggc gattgtttga ggatgaagtg ataagggaga      1560
     cagccgaatt gccggaaaac atcgctaaat caccgctgga tgaccaggtg actgcactgc      1620
     actcgttagt gcacagagtg tgcgacagtg tatgccgaga gccgtcagga aagtagtttg      1680
     gtggaccgcc gaactacaat ccaaacgcca agaggtcagg agactgaggc gacagctcca      1740
     gaacgctcgt cggcacgaga ccagtgaagc ggagcagctc gtggttgcgt tgagaatctc      1800
     ctcagcgcaa tacaagaaac tcatccaaac gacgaaggag gacaattggc gatgcttcgt      1860
     gggagaaaac agagatgatc catgggggca cgtctacaag atttgccgag gccgcaaaaa      1920
     gagtacggag attggagggc ttcggataaa tggtgaactg gttacaacat ggcttgactg      1980
     tgcgattgag ctcctccgca actttttccc tgttgcggag tcgaatgcac acattgctat      2040
     tgaatccgag gctccaccgg ccctcgaagc tttcgaggtt gatgcatgcg tcggcaggtt      2100
     gaagagcagg cgctctcccg gcatggacgg catcacaggt gccatttgca aggcagtgtg      2160
     gcgtgccatt cctcagcact tgacagcgtt gtattcccgc tgcctggaga cagggtactt      2220
     tcccaagaga tggaagcatc ctggtgaatc gtcttaagga taccataccg gatggctgca      2280
     tatggcaatt tggatttcgc aagggacgct gtgtcgagga tgcttggaac cacgtcacta      2340
     gtacagtttc ggccagccag tcgaaatacg tgctcggaat attcgtggat ttcaagggag      2400
     ccttcgacaa cgttgagtgg aatgctgcat tacaccgtct ccttgagctg ggatgtcgag      2460
     aagcaaactt gtggcgaagt ttcttctccg gccggagtgc gagcatcgtc agcaggtatg      2520
     aagaagccac tgttccggtg acaagaggtt gcccacaggg gtccataagt ggtccattca      2580
     tatggaacat cttgatggac gtgctgcttc agcgcttgga gccacttggt gcgctcagcg      2640
     cgtatgctga cgatttgctc ctcctcatcg agggaaattc ccgctcagag ctggagcata      2700
     aaggagcgga cctgatgtct atcgtaggcg cttggggagt tgaagtcggc gtggccgttt      2760
     taactagcaa gacggcgatc atgctgctca aaaggtatgc ttagacggcc gccagtggta      2820
     cggtttgctg gagcaagcct gccatacagg cgtaagtatc ggtacctggg catcacggtc      2880
     ggcgaacggt tgagttttct cccgcacatc gctggcctgc gagataagct gactggagtc      2940
     gtaggggcat tgtcgcgcgt gctgcgggtc gactggggac tcaggttccg cgcaaagcgg      3000
     acaatatatg ccggactcat ggtgccatgt gcactatttg gtgcctcggt ttggtcagtc      3060
     gccatgacgg cgcaakcaat cacgaagatg attgcgtgcc aaagagctat cctgattgga      3120
     tgcctaccga tatgccgaac agtgtcctcc gtggcattgc aagtacttgc tggagccccc      3180
     ccgtttgatc tggtcgccag acgtctggca atcagattca aactaaagcg tgactacccg      3240
     ctggaggaga gcgattggct atacggcgaa gatttggcaa aatctaagct ggaagcagaa      3300
     gatgacgcga ctagacgaat gcatgctgtg cgagtggcaa cgcagatggg atgatggtag      3360
     ctccccagga cgggtgccgc accgcttcat cccgaacgta agcttcgtct acagcgagcg      3420
     aaggtttggc ttcacgctgc gcgctggatt cctgctgact ggccatgcat cgctcaatgc      3480
     atttttgcat cagagaaggc taagcgacac gcctgcatgt ctatgcggcg cagagcgcga      3540
     ggattggcag cacttcttat gtgactgtcc cctctatgca gatttgcgag acctcgatgg      3600
     acttggagtg cagcacatag atggcgaatg gaatttttcc gaagtggtgg ctacgcagga      3660
     gaggatgcag ttgctggatc gattcgcagg agaggcgttc tccaggaagc gacaactgct      3720
     ggaccctatg gcgacacatg ggccgtcagt cccggactac tagagtcaaa actgacaccc      3780
     catggattcc ctatacggtg cttgccgggg ccaaaaggga gggcgatcga tctcttaatt      3840
     tcgtccacgg gttgggcagt ggtccaagac tgtccattga ggtaggcccc cttgtgggag      3900
     ttcgtggtgg ctgtagttag aaccgttagg ttcctcgtgg agttgcgctc ttaaccgggt      3960
     accgtgaacc atagatcgga agaggtgtta ggtacacctt gcccttacca agggggattg      4020
     tatgttccga caaaacatac agtcaattgg tactaggatg agtcgctatg tacatagcta      4080
     tagcttctta tcctagggcg ttaattggcg cttcgtacca gattcatgtg tttatatttt      4140
     atataataga caccgtggtt ttaatcccta cctgtggaaa atgccacgtt aaataaaact      4200
     gcgagaacag attcattc                                                    4218
//
ID   R1-1_DBi    repbase;    DNA;    INV; 4279 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4279
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 940-940 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..628
FT                 /product="R1-1_DBi_1p"
FT                 /translation="VXEVRELKRGGAIIRTPSQAEMSKIVASAKFAEVGLK
FT                 VSKNTAAKPRVTVQDVDTTVTPDEFMMELKEKNFEEMSLKEFQKAVVLATK
FT                 PWSAANSATINVTLEVDDQALAVLESGRVYIKWFSYRCRSQVRTYACHRCL
FT                 GFDHKVSECRYARENQVCRQCGQNDHVAAKCKNAVDCRNCRHKGLPSGHYM
FT                 LSGGCPIYSTVLARVQARH"
FT   CDS           633..3719
FT                 /product="R1-1_DBi_2p"
FT                 /translation="MFSFIQANCGRGRCAVIELAKRMRDAGHLFALIQEPY
FT                 VDAGKRLTGLPGGMRIFADKRKKAAIIVDDPSAICMPIETLTTDYGVCVSV
FT                 TGKYGTIFLSSVYCQYSAALQPYTDYLDTVLLLASRTPTILGLDANAVSPM
FT                 WFSKTPANSGDRLNRERGQLMDEWIIASGACVLNTASQVFTFDNHRSRSDI
FT                 DVTFTNEAARVWATYEWRVDFWELSDHNIITVEVTPDPSSTVESLAPVPQW
FT                 RLSNASWRRFRVELRDAAECLEELEESPLDDHVSALRSIVHEVCDRVIGRR
FT                 IPAARGNVIWWNPELSTKRQEVRRLRRRLQAARRSGTDDVERLAAGLRLAS
FT                 GQYKKLILTTKEQNWRDFVGRHKDDPWGHAYRICRGRKKTADLGCLRSNGA
FT                 LLTTWHDCANILLRNFFPVAESTVREDITPAAPPTLEAFEVATSVAKLRSR
FT                 RSPGMDGITGGIVKEVWRAIPQHLTKLYSRCLSEGYFPAEWKHPRVIPLVK
FT                 GPDKDRSDPASYRGICLLPVFGKALEGIMVNRLKDVLPDGCRWQFGFRPGR
FT                 CVEDAWMHAKNTVSNSRERRVLGIFVDFKGAFDNVEWNAVLDRLVDVGCRE
FT                 IDLWKSYFSGRSASIISSYEAATVSVTRGCPQGSVSGPFIWNLLMDVLLQR
FT                 LEPHCALSAFADDLLLFVDGNSRADLERKGEQLMDIVGAWGAEVGVSVSTS
FT                 KTAIMLLKGNLSHTRRPTVRFAGASLPYVTKCRYLGILVGERMSFLPHISS
FT                 LRDRLAGVAGGLARVLRVDWGLSSRAKRTIYSGLMVPCALFGASVWYKAAS
FT                 RGKSLRLLTSCQRTILLGCLPVCRTVSTVALQVLAGAPPMDLDAHRMAVKF
FT                 KLRKHVPLDESDWLHGQDLSVLDWKSKMALLDECLLNEWQLRWDQAAHGSV
FT                 TRQFFPEAAFVYKRKNFVFTLRAGFLLTGHGSFNAFLHGRTLSTTTACSCG
FT                 EVSEDWLHVLCECRLYSDLRDLDALGVVRVQERWNVAGVVETPERMRLLGA
FT                 FADAAFSRRRMEATRDEPQAPGQ"
XX
SQ   Sequence 4279 BP; 982 A; 1071 C; 1297 G; 928 T; 1 other;
     agtgcwggag gtgcgagagt tgaagcgggg cggcgcgatt attcgcacgc cctcgcaggc        60
     ggagatgtcg aaaatcgttg cctccgcaaa attcgctgag gtgggcctta aggtgtccaa       120
     aaacactgcc gcgaaaccca gggtgacggt acaggacgtg gacaccactg tgacgccgga       180
     tgaatttatg atggaattaa aagagaaaaa cttcgaggag atgtcgctga aggagttcca       240
     gaaggcggta gtcctggcga ccaagccctg gtcagctgct aacagcgcca caataaacgt       300
     gacgctggaa gtagatgatc aggcgttggc cgttctcgaa agcgggaggg tgtacatcaa       360
     gtggttctct taccgctgcc gctctcaagt gcgcacctat gcgtgccacc gatgtcttgg       420
     ctttgaccac aaagtcagcg agtgtcggta cgctcgagaa aaccaggtct gccgtcagtg       480
     cggacagaac gaccacgtcg cggcgaagtg caaaaatgcg gtggactgcc gtaactgccg       540
     ccataaaggg ctaccctcgg ggcactatat gctctcgggt ggatgcccga tatacagcac       600
     ggtgctagcc agggtgcaag ctagacatta acatgttcag cttcatccaa gcgaattgtg       660
     gtcgaggccg ttgcgctgtc atcgagcttg caaaacggat gagagatgct ggccacctgt       720
     tcgcactcat tcaggagccc tatgtggacg caggcaagcg tctcactgga ctccctggag       780
     gcatgaggat cttcgccgac aagaggaaga aagctgccat catcgtggac gacccatctg       840
     ccatctgcat gcccatcgag acattgacga cggattatgg agtgtgcgtg agtgtcacag       900
     gaaaatacgg caccattttt ctgtcctccg tatactgcca gtactcagct gccctgcagc       960
     cctacactga ctacctggat acggttctgc tgctagccag caggacaccg acaatcctcg      1020
     gacttgatgc gaatgcggtt tccccgatgt ggttcagcaa aactccagct aactctggag      1080
     accgtctgaa tcgcgaacgg ggacagctca tggacgagtg gatcatcgca agcggtgcct      1140
     gtgtgctcaa tacggccagc caggtgttca cgttcgataa tcaccgctcc agaagtgata      1200
     tcgacgtgac cttcaccaac gaagcagcgc gtgtgtgggc aacatacgaa tggagagttg      1260
     acttctggga gctgagtgac cacaacatca tcactgttga ggttactcca gatccaagca      1320
     gtaccgttga gagcctagct ccggtaccgc aatggaggct ctccaatgca agttggcgaa      1380
     gattcagagt agaactaagg gatgcagctg aatgtctcga ggaattggag gaatcgccgt      1440
     tggatgatca tgtgtcagcc cttcgctcca tcgtacacga agtgtgcgac agggtgatag      1500
     ggcgcaggat acctgcagca aggggaaacg taatatggtg gaatcctgaa ctgagtacca      1560
     agcgccaaga ggtcaggaga ctgaggcgca ggctgcaggc agctcgccgg agtggcaccg      1620
     acgatgttga gcgacttgcc gctggattaa ggcttgcctc aggccagtat aagaagctta      1680
     tcctgacgac aaaggaacaa aactggcggg acttcgtggg acggcacaag gatgatccat      1740
     gggggcacgc ctaccgaata tgccgaggcc ggaaaaagac agccgatctt ggatgtctta      1800
     ggtcgaacgg cgcgctactt acgacatggc acgactgcgc aaatatactc ctccgcaact      1860
     tcttccctgt tgcggagtcg acggtgcgtg aggatataac tcctgctgct ccaccgaccc      1920
     tcgaagcctt cgaggtggca accagcgtcg cgaagctgag aagccggcga tcgccgggaa      1980
     tggacggcat cacgggtggg atcgtcaagg aggtatggcg tgctatccct cagcacctga      2040
     cgaagttgta ctctcggtgc ctctcggaag gatattttcc tgccgagtgg aaacacccga      2100
     gagtgatacc gctggtaaag gggccagata aggacaggag cgatcctgcc tcttatcgtg      2160
     gcatatgcct tttgccagtg ttcggaaagg cgctggaagg gatcatggtg aatcgactga      2220
     aggatgtgct accggatggc tgcagatggc aatttggatt tcggcctgga cgctgcgtgg      2280
     aggatgcgtg gatgcacgcc aaaaacaccg tttccaacag tcgcgagagg agggtgctgg      2340
     gaatctttgt cgatttcaag ggagccttcg acaatgttga gtggaacgcg gtgctggatc      2400
     ggcttgtcga cgtcggctgt cgagagatag acttgtggaa aagttatttc tccggtcgaa      2460
     gtgccagtat catcagcagc tatgaagcgg ccacagtgtc ggttacacgg ggctgcccgc      2520
     aagggtccgt cagtggtcca ttcatttgga acctactgat ggatgtgctg cttcagcgcc      2580
     tggagccaca ttgtgctctg agcgcgtttg cagatgactt gctacttttc gtcgatggga      2640
     attcccgtgc cgatctggag cgaaagggcg agcagttgat ggacatcgtg ggagcctggg      2700
     gagctgaggt tggagtgagt gtgtcaacca gcaagacggc aatcatgttg ctgaaaggga      2760
     atctttcaca cactaggaga ccgacggtac ggtttgctgg agcaagcctg ccatacgtca      2820
     ccaaatgccg gtaccttggc atcttagtcg gcgagcggat gagttttctc ccgcatatct      2880
     cttctctcag agatcggctg gctggagttg ccggagggct agcacgggtg ctccgagtcg      2940
     attgggggct cagctcccgt gctaagagga cgatatacag cggactcatg gtcccctgtg      3000
     cactcttcgg tgcctcggtc tggtacaagg cggcgagcag gggcaagtcc ctaagactcc      3060
     tcacctcgtg ccagaggacc atcctattag gatgcctacc ggtatgccgc acagtgtcca      3120
     cggtggcact gcaggtgctt gctggtgctc ctccaatgga tttagatgct cacaggatgg      3180
     cagtgaagtt taagctgagg aagcacgttc ccctggacga gagcgactgg ctccacggac      3240
     aggacttgtc tgtgttggac tggaaatcca agatggctct gctagacgag tgtctgctaa      3300
     atgagtggca actcagatgg gatcaagcgg ctcacggttc cgtgactcgc cagttcttcc      3360
     cagaggcagc gttcgtctac aagaggaaga actttgtctt taccttaaga gccggattct      3420
     tgctgacagg acacgggtcg ttcaacgcat tcctccatgg cagaaccctc agcaccacaa      3480
     ccgcatgctc atgtggagag gtgagtgagg actggcttca cgtactatgt gagtgccgcc      3540
     tctatagcga tttgcgtgac ttggatgccc ttggagttgt tcgagtccaa gaacgatgga      3600
     acgtcgcagg agtagtcgag accccagaac ggatgcgtct cctaggagct tttgctgatg      3660
     ctgccttctc gaggcgtagg atggaagcga cgagggatga accgcaggcg ccgggacaat      3720
     agtcccaaaa cccccttgcc gtgtggcaac ggcgaagaat actgccacag cctgtcattg      3780
     cttgtcgtag gaggcgacta atatgacatg gttgccccat ccgagcttgt cggagctgaa      3840
     ggggtgaggc ccaccgagcc tgaaatttcg gtgccacggg ttgagtggtt ctccaaggct      3900
     actcattgag gtcggccccc tagtgggagt ttcgtggtgg ctgtggttga cacctatatc      3960
     gcgggtagag tctccgggct cgacgtggat gttgcgttaa tacaactcgg gtgctgcgac      4020
     ccaaagaaca gtagagattt tagatagatc tcgcccctac gcaaggggga gtgcttgccc      4080
     gacaagcaag tacttaaatt gctactgggg tggttgctat gtacatagct atagcttcta      4140
     gtccggggcg ttggtttggt gcttaaccca gacccgtgca ttatatactc acttgtgggt      4200
     atattagaat gccgtggctg taatcccttc agtgcggaac acgtcacgtt aaataagttc      4260
     ggagggatcc gagacacac                                                   4279
//
ID   R1-1_DBp    repbase;    DNA;    INV; 3599 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 17.05, Created)
DT   17-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3599
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 726-726 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..441
FT                 /product="R1-1_DBp_1p"
FT                 /translation="EITTKEEVSEAIGKLVESPGVPVSDILLRKAFGQTQT
FT                 AIIRLPAACARKAMKIGWLKVGWVRCRLRERTRVIKCFRCLEFGHMAKQCQ
FT                 SAIDRSRMCRRCGKDGHMAKDCAEEPKCAFCSNAGKEAGHIAGSGKCPMFR
FT                 SALSQRKS"
FT   CDS           444..3332
FT                 /product="R1-1_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKCTQLNLNHCEAAQSLLRQAVRDEQTQVVLISEPYR
FT                 SIPGNGWLASSCKGAALWSTETAPQDIRTSSEGFVRAKINGVTFYSCYAPP
FT                 RWEISRYXRMLRSLVADARGRSPVVIGGDFNAWSPEWGSRAPNERGTSLLE
FT                 HFAALDVVLANRGQKLTYSKAGRGSIIDITFVSSALIRRCNWEVSDAFTFS
FT                 DHQAIHFTLGGVSRKRIPKVTGPKWKDTRLDREALSVTLQALDRTSSSSPE
FT                 GAAEELSGSLAHACDSAMPRRKPSRRGAPVYWWNQDIQQLRTACLRARRRF
FT                 QRARGSEDLTTRTEEFKAAKRALKLAIKASKRECFKKICDEAEVDPWPGTA
FT                 YKVVMKRIKGQEHLRPTCPTLLRKIVEALFPKHPPKRETIPADDGEPFTPV
FT                 TEEEIRSYAKKIKAGKTPGPDGVPNSVLRQAMQEKPEVFAETFNKCLQHGT
FT                 FPKKWKRQNLILLPKGNKATDDPSGFRPICLLDTVGKVLEMAIATRVSKFA
FT                 EAKGTLSVSQYGFRKARSTVDAIKAVTDTAEAAIAGTRWKWGDKEYCAMVT
FT                 LDIRNAFNSANWTRIQRALFLAGTPRYLQLILSSYLSDRTLLYDTDEGPKS
FT                 YEVTAGVPQGSVLGPLLWNIMYDEVLRIELPTGCKLIGFADDLALLVVAKE
FT                 TKDVETNASEAIRRISTWMSDSGLDLAAHKTEAVLFTSRKKVEYITIQVGN
FT                 CCITSKEAIKYLGVMLDNRMSYGAHVEYSTIKAARIQGALSRMLPNVGGPK
FT                 EGRRRLLASVVTSVLLYAAPIWAASVRRQQGLKKKLGASYRLAALRVISGF
FT                 RTISEEAALVLAGMIPIDILANEAEEIYASNRQRGRNSSREAIKKSARQAA
FT                 LSSWQERWDSTTKGRWTHRLIPNIQEWIGRNNGQVSYQLTQFLTGHGGTEN
FT                 TSIDSDTTKVQCAPTAQEQTRTQSTFCTIVGDIVPSSDRYQIRSSSWNSCV
FT                 AHRSNGTG"
XX
SQ   Sequence 3599 BP; 1020 A; 881 C; 1047 G; 648 T; 3 other;
     gagatcacta caaaggagga ggtttctgaa gccattggaa agctggtgga atctccaggg        60
     gtgccggtaa gcgacatcct tttaaggaag gcttttggcc agacgcagac agccataatt       120
     agactgcctg cagcgtgtgc tcggaaagca atgaagatag gctggttgaa ggtaggctgg       180
     gtgcggtgca gactcaggga aaggaccaga gtcattaagt gcttcagatg cctcgagttt       240
     gggcacatgg cgaaacaatg tcagagcgcc atcgaccgct cacgaatgtg caggagatgt       300
     ggcaaggacg gccatatggc aaaagactgc gcggaagaac ctaagtgtgc gttctgcagc       360
     aacgccggga aggaagcagg acacatagca ggaagtggga aatgtccgat gtttaggagc       420
     gccctctcac aaaggaaaag ctaatgaagt gcacccagct caaccttaac cattgcgagg       480
     cggctcagtc gctgcttagg caggcggtca gagacgagca gacacaggta gtcctcatct       540
     cggaaccata taggagcatc ccaggaaacg gatggctggc aagcagctgc aagggagcgg       600
     ctctgtggtc aacggagacg gctccccagg acattaggac atccagcgaa ggttttgtcc       660
     gggccaaaat aaatggggtt acattttaca gctgctacgc cccgccaaga tgggaaatct       720
     cgcgctaccw aaggatgcta cgaagcctgg tagcggatgc aagaggcaga tcgccggtgg       780
     tcattggagg ggacttcaac gcctggtccc cggagtgggg aagccgagca ccgaacgaga       840
     ggggtaccag tctactggaa cactttgcgg cactggacgt ggtcttggcc aatagaggcc       900
     aaaagctgac gtacagcaag gcagggcgtg gatctattat cgacatcacc ttcgttagca       960
     gcgcactaat aaggaggtgc aactgggagg tcagtgatgc ttttactttc agcgaccacc      1020
     aggcaataca cttcaccctt ggaggggtaa gtaggaaacg gattcccaag gtgacaggac      1080
     cgaaatggaa ggacacgcgt ttggatcgag aagcactctc ggtaaccctg caggcgctgg      1140
     accggacttc atcatcctcc ccggagggag cagcggagga actctcagga tcactagcac      1200
     atgcttgcga cagtgccatg cctaggagga aacccagcag aagaggagca ccagtatact      1260
     ggtggaacca ggacattcag caactaagga ccgcctgcct gcgggcaaga agacgcttcc      1320
     aaagggcaag aggctcagag gacctaacca ccagaacgga ggagttcaag gcagctaaga      1380
     gggccttgaa actggctata aaagccagca aacgtgaatg ctttaaaaaa atctgcgacg      1440
     aggcggaggt ggacccatgg cccggcacag cctacaaggt cgtcatgaaa aggattaaag      1500
     ggcaagaaca ccttagacca acatgcccta ccctattaag gaaaatagtg gaggctctgt      1560
     tcccgaagca cccgccaaaa agggagacta taccagccga tgatggggag ccgtttacgc      1620
     cagttacgga ggaggagatc cggagctacg caaaaaagat taaggctgga aagactccag      1680
     gaccagacgg agtgccaaat tccgtcctga ggcaggccat gcaggagaaa ccggaggtct      1740
     tcgctgagac cttcaacaag tgtcttcagc acggcacttt tccaaaaaag tggaagaggc      1800
     agaacctcat tctgctgccg aaagggaaca aggcgacaga cgacccatca ggattcaggc      1860
     ccatatgtct cctagacacg gtagggaaag tcctcgagat ggccatagct actcgcgtct      1920
     cgaaattcgc tgaggccaaa ggaacgctct cggtcagcca gtacggcttc cgkaaggcgc      1980
     gctccacggt ggacgccatc aaagccgtga ccgacacggc ggaagcagcc atcgcgggaa      2040
     ctcggtggaa atggggagat aaggagtatt gcgcgatggt aacactagac atccgcaacg      2100
     ccttcaactc ggctaattgg acacgtatcc aacgagcctt gttcttggca ggcactccta      2160
     gatacctaca actaatatta tccagctacc tttcagatag gacactgctg tacgacacgg      2220
     acgaaggacc aaaatcctat gaggtgactg cgggggtgcc gcaaggatcg gtcctcgggc      2280
     cacttctttg gaacatcatg tacgacgaag tactcaggat cgaactaccg acaggatgca      2340
     aactcatcgg cttcgcggac gacctggcgc tgctcgtggt ggcgaaggaa accaaggacg      2400
     tggaaaccaa tgcgagtgaa gcaatacgga gaatwtcaac ctggatgtct gactctggac      2460
     tggacctagc agcacataaa acggaggcag ttctcttcac gagcaggaag aaggtggagt      2520
     acattaccat ccaggtgggc aactgctgca tcacgtcaaa ggaggcaatt aaatacctag      2580
     gggtaatgct ggacaacagg atgtcctacg gagcgcacgt ggagtactcc accataaaag      2640
     ctgcaaggat ccaaggcgca ctctcaagga tgctgccaaa cgtgggaggc ccaaaggaag      2700
     gcaggagacg tcttttagcc agtgtcgtca cgtcggtctt gctgtacgca gcgccgatat      2760
     gggctgcgtc agtcagaaga caacaggggc ttaagaaaaa gctaggggca tcgtaccgac      2820
     tagcggccct acgcgtcata tccggcttta gaaccatatc cgaggaagcc gccctcgttc      2880
     tagccggaat gattccaatt gatatactgg ctaatgaagc ggaggaaatc tacgcatcca      2940
     atcggcaacg gggaaggaat tcatcccgag aggccatcaa gaagtcagcc cgacaagcgg      3000
     cattatcctc atggcaggag aggtgggact caacgaccaa aggtagatgg acgcacaggc      3060
     taatcccaaa catccaggag tggatcggaa ggaacaacgg tcaggttagt taccagctta      3120
     cccagtttct tacaggtcac gggggtacag aaaatacctc catagattcg gacacgacga      3180
     aagtccagtg tgccccaact gcccaggagc agacgaggac ccagagcaca ttttgtacaa      3240
     ttgtaggaga tatcgtgcca tcgtcggatc gctaccagat ccggagcagc tcgtggaatt      3300
     catgtgtagc tcacaggagc aatggaactg ggtaagccag ttgatagctt atacacaggg      3360
     cgacttaaga agactcgaaa atgaacgtcg cttaagggag aatgcctaga ttaggcaacc      3420
     cttccccgcg aagtaatact tagcagtggt accgcggggt ctgtggtgtg tgcgggggtg      3480
     tctttagtac gtaggcgccg gctagacatg ccggtgaatc gtgcatgcta ttggtacggg      3540
     ccaatagtat ctaggataga ttttcacctc aatggcgcaa tccaaaaaaa aaaaaaaaa       3599
//
ID   R1-1_DEl    repbase;    DNA;    INV; 4777 BP.
XX
AC   .
XX
DT   21-SEP-2011 (Rel. 17.04, Created)
DT   04-APR-2012 (Rel. 17.04, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4777
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 574-574 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           401..1288
FT                 /product="R1-1_DEl_1p"
FT                 /translation="MDKVKGSGHDEAQALAVARAEEELLRKFQMMKQKVPR
FT                 SPTGIEQTSEAHPXSAPPKVAGPIFNFSSNVDDQTTPKRSREATSPEEAID
FT                 GAQKKQRVQKSATALTDELGKMLDEMIAKFTDTKSNNKKVVRHVTQATIDS
FT                 LQAMKKLQSEISATLDETHARAPTACAAQQTTPSMVGPGQEAASTERVHTG
FT                 TGNQTRNPGWQQVRRKTKKPRVTGENIRESEDHARLTVNRKSQRPDAILIK
FT                 CSEGSYADMLKLVKTEPTLQGLKDGVQGIRRTANGSLLLKMQKPSDPATQQ
FT                 LHTA"
FT   CDS           1700..4618
FT                 /product="R1-1_DEl_2p"
FT                 /translation="MVKVLQINLNHCRAAQDLLTQTAIEQQADVAIXSEPY
FT                 KAKHEGVWQHSADGRAAIWSCGQPSGHLSQRASRAGYTRAMFRGLTIYSCY
FT                 IAPSVRISEFRAIMQEIADDARGRSPILIAGDFNAWSTTWGSASTTQRGTI
FT                 LLEALASLNVCLLNEGNRPTFSKSGRESIIDLTFASPELARNCAWRVSDIY
FT                 THSDHALIITQTRPRLASPSSRLTSYKAHTLNTVALLAHMEGVCVTGDANT
FT                 CAKNLADRVKAACDASMGKAMKGGNGRRPVPWWNEEIDGARRDCLAARRRC
FT                 QRSRGRGNQELSEATYRAKRKVLKNAIKASKARCFQELCEAADAEPFGSAY
FT                 RMVMGKLNRQPTPTDHLQLGNIVATLFPTQPPLTWQATGLGDTVLTSEAEV
FT                 LAALRKTKAGKAPGPDGIPNAALHTIVAAYPGIFAEMYNKCLIQRTFPTGW
FT                 KRQRLVLIPKPGKMNDDASSYRPLCMLDTMGKIFERIICTRLEKELDDLGA
FT                 FSDHQFGFRKEKSTIDAIRAVTQLAAKAIEGERWIGGSKEYCLVCTLDVKN
FT                 AFNSANWNLVLRALRLMGISDYLTDLVADYFKDRVLTYSSDVGEHEYQVTG
FT                 GVPQGSVLGPILWNAMYDGILRQALPEGCTVVGFADDIALVTVAKTLEEAT
FT                 VRCSLSIDTLMSWLADNGLSLAEHKTEAVLISSRKIVEKATIRVGSTLIAS
FT                 SDSIKYLGVMIDHRLSFKTHLAYAAAKASRSTASISRMMANTRGPKQHSRR
FT                 IIATVVTSTILYAAPIWAEAMKTATYSRQCKAVYRRCALRITSSFCTVSEE
FT                 AALVIAGTIPIDLLAAERRTGSTGSRTQRSSTIEAWQRRWNSASTGRWTHR
FT                 LIPSLIPWLQRRHGQVDFYLTQMISGHGCYKEYLYRFKHEPNPCCDHCGTA
FT                 SIEDAEHAFFICPLYARNRAEAELRTERFLTVDNVINCMLENQRNWDAVAN
FT                 LAAGILKDLRRREQSRRN"
XX
SQ   Sequence 4777 BP; 1358 A; 1279 C; 1301 G; 832 T; 7 other;
     agtttccaca agccgcacac gcgcgttttt cccggcacaa ccaaacaaca gcgatcagct        60
     gattgcagtg ttggacagcg ccgagcttaa cagtgagctt aacattaagc tttcccgatt       120
     gagctttaca gcggctgcta gggagctatc cgatatcggt tacccgggat atttaaaata       180
     aaaaattaaa tacaaaataa acccaatttt accaccttcg ccactgcctc caggggtgga       240
     tgagcaaaca gccaaggtac cggccaattc ccaaccccac cgcgatagcg gcgccagctc       300
     aaacggggcc ctggggaccg agtcggagcg gtatagctcc catcaggcat cagccggggg       360
     aaatcccggt tcaccgaggg acctccaact ggtgcaggcg atggataagg tgaaagggtc       420
     cggacatgac gaggcccagg cccttgcagt tgccagggcg gaggaagagc tgctaaggaa       480
     gttccagatg atgaaacaga aggtgccgcg gtctcctacg gggatagagc agacttccga       540
     ggctcaccca ktgtcagcgc cccctaaagt agctggacca atcttcaact tcagcagtaa       600
     tgtggacgat caaaccacgc cgaagagaag tcgggaagca accagccctg aagaggccat       660
     cgatggagcc cagaagaagc agcgggtcca gaaaagcgcc acagccctca ccgatgagct       720
     gggtaagatg ctcgacgaaa tgatcgcgaa atttactgac acgaagagta acaacaagaa       780
     ggttgtccga catgtcaccc aggccacgat cgactcactg caggctatga aaaagctgca       840
     aagcgagatt agtgcgacgc tggacgaaac tcacgccagg gctccgaccg cctgcgcagc       900
     ccagcagaca acgccatcga tggttggccc aggacaagaa gccgctagca cagagagggt       960
     gcatactggc acagggaacc agacgagaaa ccctggctgg cagcaggtta ggcgcaaaac      1020
     caagaagccc cgcgtgactg gcgagaatat cagggaaagc gaagaccacg cgagactcac      1080
     cgtgaatcgg aagagccagc gccctgacgc tatcctgatc aaatgcagcg aaggatcgta      1140
     cgcagacatg ctcaagttgg ttaaaaccga gcctaccctw caggggctta aggatggggt      1200
     gcaaggcata cgcaggacag ccaatgggag cctgctactc aagatgcaga aaccctcaga      1260
     cccagccacg cagcaactgc atacagcatg aagtccgtct tcggcgggcg ctgcacctag      1320
     gatgcgaaag gcctatggcg gaacccaaac ggcgacggtt cacctcagac aagagcatgc      1380
     acagcggatc ctcgacaagg ggaaatccgg taggatgggt aatcgccgca taaggcagaa      1440
     aatggagccc aggcgatgct acaaatgcat gggataggcc atatgtctgc tagatgccca      1500
     gcgtcggagg caacagccaa aaacacgcag gaatcctgct tcagatgtgg caaggatggs      1560
     cacaagtaca gaacttgtac tcagggcaaa ccgaaatgta tmatttgcac gagacgagga      1620
     ataactggag gagaggccga acactcgacc ctcagcaggt tgtgtcctga gtaccggaaa      1680
     gctctgaact gtatacagca tggttaaggt tctacagatt aacctaaacc actgcagagc      1740
     ggcgcaggac ctactaaccc agacggcaat cgaacaacag gctgatgtgg caatamtcag      1800
     cgagccctat aaggccaaac acgaaggcgt atggcaacat agtgcggacg gtagagcagc      1860
     gatttggagc tgcgggcagc cttctggaca cctatcgcaa agggcatcca gagcgggata      1920
     caccagagcg atgttcagag gcctaacaat ctacagctgc tacattgccc cgagcgtacg      1980
     cattagcgag ttcagagcaa taatgcagga gatcgctgac gacgcacgcg gcaggtcacc      2040
     aatcctcatc gcaggtgatt tcaacgcatg gtccacaaca tggggcagcg ctagtacgac      2100
     acagcgggga accatcctcc ttgaggcgtt ggcttcgtta aatgtttgcc tactcaacga      2160
     agggaacagg ccaaccttta gcaagtcagg ccgggaatcg attatcgatt tgaccttcgc      2220
     cagcccagaa ctggcacgta actgcgcatg gagggtgtca gacatctaca ctcacagcga      2280
     ccacgcgctg atcatcaccc agacaagacc cagattggcc tcccctagca gtcgcctaac      2340
     gtcctacaaa gcccataccc ttaacacagt ggccctccta gcacacatgg aaggcgtctg      2400
     cgttacagga gacgctaaca cctgcgcaaa gaacttagcc gatagagtta aggcggcgtg      2460
     tgatgcctcc atgggaaaag ccatgaaagg tggtaatggg cgtagaccag ttccgtggtg      2520
     gaacgaggag atagacggag caaggagaga ctgcctagcg gcccgacgca ggtgtcagag      2580
     aagcagagga cgcggaaacc aagagctgag cgaagcaacc tatagggcca agagaaaggt      2640
     gctgaaaaat gcgatcaaag ccagcaaggc cagatgcttc caggagctgt gcgaagctgc      2700
     ggatgcagaa ccattcggct cagcatacag gatggtcatg ggcaagctca acaggcagcc      2760
     gacccctact gaccacttgc agcttggcaa catagtggct actttgttcc ccacacagcc      2820
     gccgcttacc tggcaagcca ccggattagg cgataccgta ctcaccagcg aagccgaagt      2880
     actggcagca ttaaggaaaa ccaaggctgg aaaagcccct ggtccggatg gcattcccaa      2940
     tgctgcactg cacacaatag tggcagctta cccgggtata ttcgcggaaa tgtacaacaa      3000
     gtgtctcatc caacgaacct tccccacagg atggaagcgg cagagattag tgctcatccc      3060
     aaaaccgggc aagatgaacg atgacgcatc gtcatacagg cccctttgta tgctagatac      3120
     gatgggtaag atatttgagc gcataatatg cacccgcctc gaaaaggagc tcgacgatct      3180
     cggagctttc tcggaccacc agtttggttt ccggaaggaa aaaagcacca ttgacgcgat      3240
     ccgagcggtc acccaactgg ctgctaaggc aattgaagga gaaaggtgga taggcggctc      3300
     aaaagagtac tgcctcgtat gcactctgga tgtcaagaat gcatttaact ctgccaactg      3360
     gaaccttgtc ctgcgagcgc ttcgtctaat gggaatttct gactacctta ccgacctcgt      3420
     agcggactac ttcaaggaca gagtgctcac atactcttca gacgtcggag agcatgagta      3480
     ccaggtgaca ggaggagtac ctcaaggctc agtcctgggc ccgattctgt ggaacgccat      3540
     gtacgacggg atcctaaggc aggcactacc cgaaggatgc accgtagtgg gctttgcgga      3600
     cgacatagcg ctggtaacag tagckaaaac cctcgaagag gccacggtaa ggtgcagcct      3660
     ctccatagac acccttatga gctggctcgc agacaacggg ctatcgcttg ccgagcacaa      3720
     aacggaggca gtgctcataa gcagcaggaa gattgttgag aaggcaacaa ttcgagtcgg      3780
     atcaacctta atagcatcaa gcgactcaat caagtacctt ggggtaatga tcgatcacag      3840
     attatcgttc aagacccacc tagcttatgc agcagccaaa gcgtccagat cgactgcatc      3900
     catctcaagg atgatggcca acacccgagg accaaagcag cacagcagaa ggatcatagc      3960
     cacagtggtg acctcgacca tcctgtacgc cgcgcccata tgggccgagg ctatgaagac      4020
     cgcaacatat agtcgccagt gcaaagctgt ctacagacgc tgcgcactgc gcatcacaag      4080
     cagcttctgc acggtatcag aggaagccgc gctagtgata gccggtacaa taccgataga      4140
     cctcctggcg gcagaacgaa ggacaggaag tacaggaagt aggacccagc gcagcagcac      4200
     gatagaggct tggcaaagga ggtggaacag tgcgagcaca ggacggtgga cgcacaggtt      4260
     aatccccagt ctaatccctt ggctgcagag aagacacggg caggtagatt tctacctcac      4320
     acagatgatc tccgggcacg gatgctataa agaatacctg tacaggttca agcacgagcc      4380
     gaacccctgc tgcgaccact gcggcacmgc aagcatcgaa gacgcggagc acgcattctt      4440
     catctgcccc ctatacgcga ggaaccgagc cgaagctgaa ttaagaaccg agcgtttcct      4500
     gacagtggat aacgttatca attgcatgct ggaaaaccag aggaattggg atgcggtagc      4560
     taatctggcc gctggcatcc tgaaggactt aaggcgtcga gaacagagtc gacgcaacta      4620
     gcaataagga cgagcggcaa cctgaccgcc atccgtcccg cgaagtatag ctttgcggcg      4680
     gtcccgcggg aacggaactt ttctacttct tcttcttctg tcttttgtat ttcttctgta      4740
     tatatttaag cttttcttaa ataaaaaaaa aaaaaaa                               4777
//
ID   R1-1_DEr    repbase;    DNA;    INV; 5641 BP.
XX
AC   .
XX
DT   18-FEB-2012 (Rel. 17.03, Created)
DT   18-FEB-2012 (Rel. 17.03, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila erecta genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DEr.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5641
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila erecta genome.";
RL   Repbase Reports 12(3), 409-409 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           814..2541
FT                 /product="R1-1_DEr_1p"
FT                 /translation="MRTRVKNVGRYKTTPGGNQLVGNPPVENSTAGARILE
FT                 APNPILNQPGEVVASLAASTAKATSQQEKGMDNAGAFLGGGKILRSPTSTA
FT                 KATSQQEKGMDNAGAFLSSRKILRSPILPRAPAPLQAGGSNLAEGVDVQDT
FT                 PKRARTPNSPSGSSRKTPPKRTKADRQLLCAGKLTEIGLVLDQLMILTNVK
FT                 QVRHINVQMKAMFAKMKALQEDASRELETEYEPGNAPTNALPGCPKCGGRK
FT                 AKAVDKLQQTNPSPKRDSFAQTDAPYPSKIPKQHSRSPGAAQVPQRVKPRE
FT                 KRASPPKRQAKTAEKATAQQAETQSRGKPDAWXKVEARKKARLTRRPDAVI
FT                 VEAKGKTYSEVLALVTRRSDGQLQELEKSVHKVRCTASGSLLLELSRDGDR
FT                 KATLMKSGLEAVLDGVATVRALSKDSRMQFLSVSDLDPLVAAEDLSKALAD
FT                 QFNIDPSSIKLRSLRPSFRDTQTATIGLPCREAQAVLAKGKLKVGWTVCRV
FT                 KESEARPRCFKCLEFGHIAVRCKSPANRSDCCLKCGQTGHKIASCTQEAKC
FT                 FLCTSARKADAKHIAGSRRCPMSTKPLRK"
FT   CDS           2511..5516
FT                 /product="R1-1_DEr_2p"
FT                 /translation="MPYEYQATEKVKIIQINLNHCEAAHHLLSQTMRETQA
FT                 DVALISEPYXRTPGMDYILDETRSAAILTNGVSRPRNLRIGSFYVRGVVGD
FT                 LCLYSCYLPPRLTLQEFSAILEDLANDARGERNVVIAGDFNAWAEEWGSVH
FT                 TNARGRTLQEAFASLEVALLNTGSEHTFSRAGAGSVVDLTFCSSSLFQRAQ
FT                 WSLSDVYTASDHKAIICDLTSRRRTAAPPTQRQFNPRTLQRDTFLRELGNP
FT                 XIGGNAADSVECLTRAVETACRASMKVSRSHHRHREPVYWWTEEIAEARRN
FT                 CLRARRRQQREQGLPNNEFRRQEYAVNRRTLKRLIKQSKRRCFLDLCDSAE
FT                 QDPWGSAYKIVIKKLSQAKPLKAGDAAHMTAIVEHLFPAVPLAPQAADAAP
FT                 ADASALIFTXDEXRKVARDXPSGKAPGPDGIPDIAIKLGMNEHPEAFAKVF
FT                 NQCLTEGLFPKRWKRQKLVLLPKPNKPPESPSSYRPICLIDHLGKAFERCL
FT                 SSRLQVAISAAGDLSPMQFGFRKARSTVDAIATVKEIASKAVQGTRWQGGT
FT                 KEYCLVVTLDIRNAFNSARWDVTIGALRNLGVPDALVGILKSYFSDRVLVY
FT                 DTEGGTLEHRVTCGVPQGSVLGPLLWNAMYDGVLRLPLPGRTKVIGFADDI
FT                 AIVIVAKTVREAEGLGNASICTIVEWLTSVGLDIADHKTEAVLISSRKQVE
FT                 TATIQVGGATITSVRAIRYLGIMLDTRLSFKEHLAETNRKAASVARALARI
FT                 MLNCRGPRQGRRLLLQSVCRATALYAAPIWAEATNRQSYIRGLEATHRLCA
FT                 LRVCSGFRTISDDAAQVIAGTIPIDLLAVEAKEIYDAIKQIGEECSTAQRR
FT                 AIKANARAHSLERWQSRWQQSTKGRWTHRIIPDVTRWTLRRHGEVNFWLTQ
FT                 ILSGHGCFRSYLTRFGHDDDRNCPECGVEETAEHIIFNCRRFDRDREGLMG
FT                 NIMEPSTLGERMISDQCFWGQFSNFAADSMKRLRAAERERARIRPPE"
XX
SQ   Sequence 5641 BP; 1496 A; 1514 C; 1642 G; 975 T; 14 other;
     gtggcgcgaa gtgttcgaag acggctgcat catgttggcg ctcccggaaa aactccaaaa        60
     ttttacgcgc tgagtcagct gggacgcgcc aggggctgcg gcctatatca gcgatgctgt       120
     ccagtgcact tacccggtga ggacatgatc tccggagttc catggaccgt ccgccggctg       180
     agacctccag ggccatggga taggtcaggg tgagagaatt attcggagct ttctcttcag       240
     ttttctcttt cgtccccttt cttttttttg tgcaacgcga gatgcaatgc cacgccagct       300
     gatctaagcc agctgtttac ccagtgttgg aaaacgacag ccgcaagcgt ctccgaccac       360
     aggtggcgct gtggttttcg gggacttctt atcgctaact gtcaacagct acttgctatg       420
     caactcgaca aacgatcttg gcgctggttg tagcatactt tcctgggctg ctgatgagaa       480
     tccttgacga caacccatgg aatcacagcg aaaatngacc caaaaggctc gggctngtag       540
     ttataggtnt taaaggtcaa ggagcagacc aatagccaaa ccccaccgcg cacgcggtac       600
     acctaaagca ggggcactgg cgaccgagtt ggagcggtat aactcccacc ggtgaagaac       660
     ccttccccac ttctcaccat cacactgaaa tccacggagc gtctgaccca taatgggcgg       720
     ctccgtggtc tgcgtctgtg ccacaatggc cggcagtaat ctaaacctgg ccgtaggtat       780
     aaactgcaaa acaaacctgg cagtaggtat aaaatgcgta cacgagtaaa gaatgtcggt       840
     aggtataaaa ctactccagg tggtaaccaa ttagttggca atccacccgt ggaaaactcc       900
     acggcagggg cacggattct ggaggcccca aatcccattc tgaaccaacc tggcgaggtg       960
     gtggcaagct tggccgcctc gacagcgaaa gcaacaagcc aacaagagaa gggtatggac      1020
     aacgcggggg ctttcctagg tggtgggaag atcttgcgct cgccgacctc gacagcgaaa      1080
     gcaacaagcc aacaagagaa gggtatggac aacgcggggg ctttcctaag tagtaggaaa      1140
     atcttgcgct cgccgatctt gccaagggca cctgcgccac tacaggctgg cgggtccaac      1200
     cttgccgagg gagtagatgt gcaggacacg ccaaagcggg ctcggacccc aaacagcccc      1260
     tccggatcga gtcgcaaaac acccccaaaa aggacgaagg ccgatagaca gctcctgtgt      1320
     gccggtaagc tgacggaaat tggactggtc ttggaccagc ttatgatcct gaccaatgtc      1380
     aagcaggtgc gacacatcaa cgtccaaatg aaagcgatgt tcgccaaaat gaaggccctt      1440
     caggaggacg ccagcaggga gctggaaacg gagtacgaac caggcaacgc acctacgaat      1500
     gccctgccgg gatgccccaa gtgcgggggt agaaaagcga aagccgtgga caaactacag      1560
     caaactaacc ccagcccaaa aagagacagc ttcgcacaaa cggacgctcc ctacccgtcg      1620
     aagattccga agcagcactc aagaagccca ggggcagccc aagtaccaca gagggtgaag      1680
     ccgagggaga agagagccag ccctccaaag cggcaggcga agacagcgga gaaagccacg      1740
     gcacagcaag ctgaaaccca gagtcgtggc aagccagacg cgtggangaa ggtggaggcg      1800
     aggaagaaag cacgcttgac gcggagaccc gacgcggtga ttgtggaagc aaaaggcaag      1860
     acctacagcg aggtcttggc tttggttacg aggcgaagcg acggccaact gcaggagctt      1920
     gaaaagagtg tccacaaggt ccgctgcaca gcgagcggca gcttattgct cgagctgagc      1980
     agggatggcg acagaaaagc aacgctgatg aagagcggtc tagaagcagt gttggacgga      2040
     gttgcgactg tgcgagcgct gtcaaaggac tcgaggatgc agttcctatc ggttagcgac      2100
     ttggacccac tagtcgctgc agaggacctt tcaaaggcgt tggcggacca gtttaatatt      2160
     gacccaagct caataaagct gagaagcctt cgaccctcct tcagggatac ccaaacggca      2220
     acaataggcc tgccgtgtag ggaggcgcaa gcggtcctgg ccaagggaaa gctgaaggtg      2280
     ggatggacag tctgcagagt caaggagagc gaggctagac ctaggtgctt caagtgcctg      2340
     gagttcggcc acattgcggt gcgatgcaag agccctgcaa atcgcagcga ctgctgtctc      2400
     aagtgcggac aaaccgggca caagatagcc agctgcacac aagaggccaa atgcttccta      2460
     tgcaccagtg ccaggaaagc cgacgcaaag cacatcgcgg gtagcagaag atgccctatg      2520
     agtaccaagc cactgagaaa gtgaagatta tccaaattaa tctcaaccat tgcgaagctg      2580
     cgcaccacct gctgagccaa accatgcgcg aaactcaagc cgacgttgct cttattagcg      2640
     agccgtatan aagaaccccg gggatggact acatactcga cgagacaagg agcgccgcga      2700
     tcctgaccaa cggggtaagc cgaccaagga acctgcgcat cggctcattc tatgttcggg      2760
     gggtggttgg tgacctgtgc ctgtacagct gttacctacc accacgccta acccttcagg      2820
     agttttcagc aatcctagag gatctggcta acgacgcaag aggagagcgg aacgtggtca      2880
     tcgcggggga ctttaacgcc tgggcggaag aatggggctc agtccacacg aacgcaagag      2940
     gacgaaccct ccaggaagcn ttcgcgtcgc tggaagtngc tctcttaaat acgggatcgg      3000
     agcacacctt cagcagagct ggagccgggt cggtagtgga cctcaccttt tgcagtagct      3060
     cgctattcca gcgcgcacag tggtccctca gcgacgtata cacggccagc gaccacaaag      3120
     cgataatctg tgaccttacc agcagaagac gcaccgcagc cccaccaacg cagaggcaat      3180
     tcaacccaag gacgctccag cgggacacgt tcctgaggga acttgggaat cctgncatcg      3240
     gcgggaacgc agcggacagc gtggagtgtc tcactcgagc agttgagacg gcatgcagag      3300
     ccagcatgaa ggtgtcgagg agccatcacc gtcatcggga gccagtctat tggtggacag      3360
     aggagatcgc agaggcacgc agaaattgcc tacgggcaag acggcgtcag caaagggagc      3420
     agggcctccc caacaacgag ttccggaggc aagaatacgc ggtaaaccgt cggaccctga      3480
     agagactcat caagcagtca aaaaggagat gcttcctgga tctatgcgat tcagccgagc      3540
     aggacccatg gggatcagcg tataaaatag taataaaaaa gctaagtcaa gcgaaacccc      3600
     tgaaagccgg agacgccgcc cacatgacgg cgatcgtgga acacctgttc ccagcagtgc      3660
     ccttggctcc gcaagctgca gacgcggctc ctgcggacgc atcggcactg atattcacan      3720
     cggacgaaat ncgcaaggta gccagggatn tgccatcggg aaaagcacca gggccagatg      3780
     gaatcccgga catcgccatc aagctaggaa tgaacgagca cccggaagca ttcgcaaagg      3840
     ttttcaacca gtgcctcacg gaaggccttt tcccaaagcg ctggaagaga cagaagctgg      3900
     tactncttcc naaaccaaac aagcctcccg agagtccatc gtcatacagg ccgatatgcc      3960
     tgattgacca cttgggcaaa gctttcgagc gatgcctgag cagtagactg caggtagcca      4020
     tctccgctgc aggggacctt tcgccaatgc agtttggctt caggaaggcg agatctaccg      4080
     tggacgcgat cgctacggtg aaggagatcg cctcgaaggc agtgcaaggg accaggtggc      4140
     aaggaggcac caaggagtac tgtctagtgg tgacactaga catccgtaat gcgttcaatt      4200
     cggcaagatg ggacgtcacc ataggagccc tacggaacct aggcgtaccg gatgcattag      4260
     tgggcattct taagtcatac ttcagcgacc gagtactagt ctacgacaca gaagggggca      4320
     cactggagca cagggtaacc tgcggagtcc cacaaggctc agtacttggg ccactgctgt      4380
     ggaatgcgat gtacgacggg gtgctgagat taccactacc aggaagaacc aaggtgatcg      4440
     gcttcgccga cgatattgcc atagtaattg tggcaaaaac agttcgggaa gccgagggcc      4500
     ttggtaacgc atctatctgc accatagtgg agtggctcac atcggtcggg ctagatatcg      4560
     cagaccacaa aacggaggcc gtgctgatat ccagccgcaa gcaggtcgag acagccacca      4620
     tccaagtcgg tggcgccacc atcacgtcgg taagggcaat ccggtacctt ggaattatgc      4680
     tagacaccag gttgtcgttt aaagaacacc tggcggagac aaatcggaag gcggcgagcg      4740
     tcgctagggc cctagcacga ataatgctca actgcagggg ccctaggcag ggacgcaggc      4800
     ttctgctaca gtctgtctgt agggcgacag cactntacgc agcccccata tgggccgaag      4860
     ctaccaacag gcagtcttac atcaggggcc tggaagcgac gcacagactg tgcgccctga      4920
     gagtgtgctc cggtttccgg acaatatcgg acgacgcagc ccaggtcata gctgggacca      4980
     tcccaataga cttgttggcg gtagaggcga aggagatcta cgacgcgatt aagcagatcg      5040
     gagaagagtg cagcactgct cagaggcgag ccataaaagc caacgccaga gctcatagct      5100
     tggaaaggtg gcagagtcgg tggcagcagt cgacgaaggg gcgatggacc cacaggataa      5160
     tcccggacgt gaccagatgg accctaagac gtcatggcga ggttaacttc tggctgaccc      5220
     agatcctaag cggtcatggg tgttttagaa gctacctaac caggttcggc cacgatgatg      5280
     accgcaactg cccagaatgc ggcgtcgagg aaaccgccga gcacatcatt tttaattgcc      5340
     ggagattcga ccgcgaccgg gaaggcttaa tggggaatat aatggagccg tcgaccctag      5400
     gggagcgcat gatctcggac cagtgcttct ggggccagtt cagcaatttc gctgcggact      5460
     cgatgaagcg gttgcgtgca gctgagaggg aaagagccag aatacgtcca ccggagtaac      5520
     acagagcgca ccctggccct gcgaagcata gcctagcggt agtaccgcag ggactccagg      5580
     atctatcttg ttccttttat tccaaacaac cgttactccc gctcctcctc ctaagcaaaa      5640
     a                                                                      5641
//
ID   R1-1_DEu    repbase;    DNA;    INV; 4963 BP.
XX
AC   .
XX
DT   21-DEC-2011 (Rel. 17.06, Created)
DT   21-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila eugracilis genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-4963
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit flies.";
RL   Repbase Reports 12(6), 920-920 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           208..1839
FT                 /product="R1-1_DEu_1p"
FT                 /translation="MMVNNAITPGGNHSSGNPPVGKPTVGARILEAPNTIK
FT                 PTTDEAVASLAAPAAKATSXQSAEQSSAFMSSSKILRSPIMQATRSTAMPT
FT                 GGVPAGEDKETPKRTREQSSPSEPQRATPAKRTRASTGQPCSSMLAELEEI
FT                 LEDIIQQTHEKQVRSINLKMKRMFCRMKELQEGLSGILSNPSDVGTTAVAA
FT                 EVVCARCGQADIAKTDQSTQTLPTRRREAAAQTDPWRRLSQDSAAPPPRGA
FT                 PPASAKAPKIRAREGSTQRTSSHPDARTAGVGGQRMAAQTAASGPGWETAS
FT                 RRKPRTSTRPDALVVEGKGMKYSEVLALVTRRRDGQLKEFSQNVHKVRRTA
FT                 TGNLLLELAKNRTDSTDAMRENLEKVLQGAAEVRALSEDSKTKYLEIRDLD
FT                 PLATEVDIRLALTEQFEVDGKAVRLRSLRAKTWDTQTAIIGLPSKIATVVA
FT                 SKGRVRIGWTVCRIRERQSQPRCYRCLEVGHIASQCRSPTDRSGCCIRCGK
FT                 SGHKIANCPNESTCFVCATKGEKEAKHLAGSRRCPLSIGAVKDKTGCK"
FT   CDS           1833..4817
FT                 /product="R1-1_DEu_2p"
FT                 /translation="MQVIQLNLNHCRAAQDLLRHTVGEVNADIAILSEPYS
FT                 VGPGEEWATNNQGKAAIWICNSSAEGPCQVRRGEGFVRIQWGGTWVYSCYL
FT                 APSLSLDAYCKALEELAVDARGKHPVLIAGDFNAWAQEWGSTTTNARGRAL
FT                 LEILAPLDLALLNEGNQETYNRAGAGSIIDLTFVSSSLARTSTWEIADIFT
FT                 ASDHEAILCSLGTSQAISSIPPCGKAFRQDTLVVQQLETHMRTAELDLHET
FT                 ANESAEALATALDAACKASMKERTTFARHHKPAPWWTSQISSLRKECLRSR
FT                 RSLQRARGTDAQEQRHLEFKAARKALKTAIRVSKRELFLKLCDEADRDPWG
FT                 QAYRMVSKKVKAGSQPPSDPVALRAIIDVLFPSSRAEGIRPAIEDLEDEPV
FT                 EAVTAEEVLVAARNLASKKAPGPDAVPNRALKVALAQIPEKVAAIYNQCLY
FT                 EGSFPKVWKKQRLLLLMKPGKPPGEAASYRPICLLDTVGKVLEKILATRLQ
FT                 AAISREGGLADEQYGFRKGKSTVEAIMRVKNLAASAIQGTRRNGGAKQYCL
FT                 VTTLDVKNAFNTASWSRTLQALKELRIPAYLLKMVDSYLSERVLLYDTREG
FT                 QKERVISAGVPQGSVLGPLLWNTMYDGVLRLPMGEGTTIVGFADDIALVVV
FT                 AKTVRGVETLTNSAVVKVEAWMSSAGLLLAPHKTEAVLISSRKKVETATVL
FT                 VGGVAVTSRRAIKYLGVWLDTRLSFREHLEYAHRRASETTRALSRMLLNIR
FT                 GPRQERRKLITSVVSSQILYAAPVWAEAMGVRSYARGVEADHRLCALRTSS
FT                 AFRTVSDDAALVIAGLIPIKELVRERKELANMAQDSLSSVSVRRREVRATS
FT                 LTNWQRRWEESSKGRWTFRLIPDVGKWTDRKHGQVDFYLTQALSGHGCFRS
FT                 YLKRFGHESEDFCPSCGSGVTEDPLHVLFECRRFVEDRLTMEEILEEPFTP
FT                 SSMVPLMLQTPAKWEAIAVYVAKTMMELRALERARNGREE"
XX
SQ   Sequence 4963 BP; 1286 A; 1322 C; 1548 G; 800 T; 7 other;
     gggggcggta tatcccccat cgtagccccg atgatacgcn cgcccncccc cccttcttct        60
     tcccactaca aatcctcgta gcgtctgtcc cataatgggc ggctacgggg tctgcgtctg       120
     agccatagtg gccggcagcg aaccccaacc tggcagaagg tataaaatgc taacctggca       180
     gtaggtataa aaagcacaac tggaanaatg atggttaaca acgcaattac tccaggtggc       240
     aaccactcaa gtggaaatcc acccgtgggg aaacccacgg tcggggcacg gattctggag       300
     gccccaaaca ccatcaaacc cacgaccgac gaggcggtgg ctagcttggc cgccccggca       360
     gcaaaagcga caagcnaaca aagtgcggag caatcctcag cgttcatgag cagctccaag       420
     atcctgcggt cacccattat gcaggcaacg cggagcacag cgatgccgac aggcggtgtt       480
     cccgcgggtg aagacaagga gacccctaaa aggacgaggg aacaatccag tccatcagag       540
     ccccagagag cgactccagc caagaggacg agagcgtcaa cagggcagcc ttgctccagc       600
     atgctggcgg agttagagga gatattggag gacatcatcc agcaaacgca cgagaaacaa       660
     gtgaggagca tcaatctcaa aatgaagagg atgttctgca ggatgaagga gctacaggaa       720
     ggccttagcg ggatcctctc caaccccagc gatgtaggga caacggcggt agcggcggag       780
     gtcgtctgtg cgaggtgcgg tcaggcagat attgcgaaga cagaccagag tacgcaaacc       840
     ctcccaaccc ggcgtaggga agcggcagcc cagaccgacc cgtggcgacg gcttagccag       900
     gacagcgcgg ctccaccacc aagaggcgcg ccaccggcct cggcaaaggc cccgaaaatc       960
     cgagcaagag aagggtccac ccagcggact tcaagccacc ccgacgccag gacagcggga      1020
     gtagggggcc agaggatggc cgcacagacc gcagcgtcag gaccaggatg ggaaacagct      1080
     tcacggagga agccaaggac gtccacccga cccgacgcgc tagtcgtgga aggcaaggga      1140
     atgaagtaca gcgaggtgct tgccttggtc accagacggc gggacggcca gctgaaggaa      1200
     ttcagtcaaa atgtccacaa agtgcgccgc accgctactg ggaacctgct gctcgagctg      1260
     gcaaaaaacc gtacggatag cacggacgcc atgagggaga acctcgaaaa ggttctacaa      1320
     ggggctgccg aagtgcgggc actgtctgag gatagcaaaa cgaagtacct agagatcagg      1380
     gacctcgatc cgctagcgac ggaggtggac attcggcttg cactgaccga gcagttcgaa      1440
     gtggatggga aggcggtcag gttaaggagt cttcgtgcaa aaacctggga cacacagacc      1500
     gctatcatcg gtctacccag caaaattgcg actgtagttg cgagcaaagg cagggtgagg      1560
     atcggatgga cagtgtgtcg gattcgggag aggcagagtc aaccgaggtg ctaccgatgc      1620
     ctggaagttg gccacatagc gagccagtgt cgaagcccca cggataggag cggatgctgc      1680
     atccgctgtg gcaaaagcgg gcataagatc gccaattgcc ccaacgagag cacctgcttc      1740
     gtttgcgcaa caaagggcga gaaggaggca aaacacctag caggaagtcg acggtgtccg      1800
     ctttccattg gtgctgttaa agataagaca ggatgcaagt gatccagctg aacctgaatc      1860
     actgtagagc ggcgcaggat ctcctgcgac acacggtagg cgaggtgaat gctgacatag      1920
     ctattctcag cgagccgtac agcgtcgggc caggcgaaga gtgggcgacc aacaatcagg      1980
     gcaaggcggc catctggatc tgcaacagtt ccgcggaagg accatgtcaa gtaaggagag      2040
     gcgaagggtt cgtgagaatc cagtggggag gtacatgggt gtacagctgc tacctagccc      2100
     caagcctctc actcgatgct tactgcaagg ctctagagga gcttgcggtc gatgccagag      2160
     gcaagcaccc agtgctaata gcaggtgatt ttaacgcgtg ggcacaggag tgggggagta      2220
     ccaccacgaa tgctagaggt agagccttgc tggagatcct agcacccctg gacctcgcac      2280
     ttctcaacga gggcaaccag gaaacctaca acagagcagg cgccggttcc atcatcgacc      2340
     tgaccttcgt cagcagtagt ctggcacgga catcaacgtg ggaaatcgcc gacatcttca      2400
     cggccagtga ccacgaggcc atactntgct cgctnggaac cagccaggcg atctcgagca      2460
     ttcccccctg cggcaaggcg tttcggcagg atacgctagt agtccaacaa ttggaaaccc      2520
     atatgcgaac ggcggagctt gatctccacg agacagccaa cgaatcagcg gaggcgcttg      2580
     ctacggccct tgatgcggct tgcaaggcaa gcatgaagga gcgcacgacc tttgctcggc      2640
     atcacaagcc ggccccgtgg tggacaagcc aaatctcgtc tctccgcaaa gagtgcctaa      2700
     ggtctagacg atccctgcag cgagctcgag gcaccgacgc gcaggagcaa aggcaccttg      2760
     agttcaaggc agctaggaaa gcgctgaaaa cagccattcg ggtcagcaag cgagagttgt      2820
     ttctcaagct atgcgatgaa gcggatcgcg acccatgggg acaggcgtac agaatggtgt      2880
     caaaaaaggt caaggcgggg agccaacccc cctccgaccc ggtagcactg agggcgataa      2940
     tcgacgtcct gttcccaagc agtagagcgg agggaatccg cccggctatt gaggatttgg      3000
     aagacgagcc ggtggaagcc gtcacagcag aggaggtgct agtggccgct cggaacctag      3060
     cctctaagaa agctcccggt ccggacgcgg tgccaaatcg agcgctaaaa gtggctctgg      3120
     cccaaatacc agaaaaggta gcagccattt acaaccagtg cctgtatgaa ggatccttcc      3180
     cgaaggtgtg gaagaagcag aggctccttc tgctaatgaa gccaggtaag ccaccaggag      3240
     aggccgcatc ttaccgaccg atctgccttc tagacacggt aggcaaggta ctggagaaga      3300
     tcctggccac aagactccag gcggcgataa gcagggaagg tggactggca gacgagcagt      3360
     acgggttccg gaaagggaag tcaacggtgg aggccattat gagggtaaag aacctggcag      3420
     caagcgccat ccaaggcacc agacggaatg ggggtgccaa gcaatactgc ctggttacca      3480
     ccctggacgt gaagaacgcc ttcaacacgg cgagctggtc gcggactctc caagccctga      3540
     aggagctgag gatcccggca tatctgctaa agatggtgga cagctacctg agcgaaagag      3600
     tactcctgta cgatacgcgg gaagggcaga aggagcgagt gatctccgcg ggagtgcccc      3660
     agggctctgt actggggccg ctcttgtgga acaccatgta cgatggagtc ctccgattac      3720
     ctatggggga gggtacaacc atcgtaggat tcgccgacga tatagccctt gtggtggtgg      3780
     cgaagacagt tcgtggggtg gaaaccctaa ccaactccgc ggtggtgaaa gtggaggctt      3840
     ggatgtctag cgccggcctt ctcctcgccc cacataagac ggaagcagtg ctgatttcga      3900
     gccggaagaa ggtcgagact gcgaccgtac ttgtaggagg agtggccgtt acctcgagga      3960
     gagccataaa atacctaggg gtctggctgg acacaaggct ctcgttccgg gagcaccttg      4020
     agtacgccca caggagggcg agcgagacga cgagagccct atcgcggatg ctcctcaaca      4080
     tcagaggccc gaggcaggaa aggagaaagc tcatcactag cgtagtgagc tcccaaatcc      4140
     tctacgccgc cccagtgtgg gcngaggcga tgggagtaag gtcctacgcg cggggagtcg      4200
     aggcagacca ccgcctctgc gcgttacgga catccagcgc ctttaggacg gtatcggacg      4260
     acgcggccct agtgatcgca gggctgatac ccatcaaaga gctggtccga gaaaggaagg      4320
     agctggccaa catggctcag gacagccttt cttcagtgtc ggtcaggagg agggaagtga      4380
     gagccacaag tctgacaaac tggcagcggc gatgggagga atcttccaag ggacgctgga      4440
     cgtttcggct cattccggac gtgggtaagt ggaccgatag gaagcatggc caggtagact      4500
     tctacctcac gcaggccctt agcggccatg ggtgcttccg aagctactta aagcgctttg      4560
     gccacgaaag cgaggacttt tgcccgtcgt gcggcagtgg agtcacagag gaccctctcc      4620
     acgtcctctt tgaatgtagg agatttgtgg aggatcgcct aaccatggag gagatcctgg      4680
     aagagccctt cacacccagc agcatggtgc cgctaatgct gcagacgccg gcgaagtggg      4740
     aagccatagc cgtatatgtg gccaagacca tgatggagtt gagagccctg gagagggcac      4800
     gtaacgggcg ggaggagtag ggcgtcagag ttgtgcgaag cattgcttca cggccgtacc      4860
     gcacgacttc ggtccaagct cttgcagccc agtcagggaa aagaaaaatg tacagtagat      4920
     ctataagatg gtttgtaagg agcgaataat aaaaaaaaaa aaa                        4963
//
ID   R1-1_DF     repbase;    DNA;    INV; 4830 BP.
XX
AC   .
XX
DT   09-JAN-2012 (Rel. 17.06, Created)
DT   09-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4830
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 985-985 (2012).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..1690
FT                 /product="R1-1_DF_1p"
FT                 /translation="MASRGPGPVSIIKEAPQGKAESAAAKDSAAPEADPFR
FT                 KSSKMGRSPTKVPKSPPIFSPAVEQEQAXTAHAGGPTEAGVFHFSAISEQG
FT                 LAPLIANGDIDGVVGAIGAKLSQLNSMMXGKTRVMVTIPMKELVQQVIALQ
FT                 KSAVRILETAPKNPSEQKPTPKRSRESPRAGKLSAPKRQKVPQPCGTSNKV
FT                 VKSITYASAAKEISGPLPPSHAAKGTKEGAEKWSTVTKKPKKQQPKKQQQQ
FT                 RKLPPRTDALVVKCGEGMQYAEVLKLVKNNPTLQQHKDCVKGIRMTGRGEL
FT                 LIKMMKTADPATSKLQKAMQETLSDKAEVKELKELVQVEIRDXAEFSSKDD
FT                 IIQAVFANYEGDIPPAAIPSLRKAYGGTLIARMSIPPVLAEKILAEGKIRI
FT                 DWAHCRVRKTVEPKRCYKCLAFGHMALHCRSKVDLSKACFNCGGLDHESKS
FT                 CSKEARCLLCAKTHGANCKHHTLSRSCPAYQQALKAKGK"
FT   CDS           1690..4650
FT                 /product="R1-1_DF_2p"
FT                 /translation="MKILQLNLNHCRAAQDLLAQTVRALKIDLAILSEPYA
FT                 SKHDGIWFQNTQGGAAIWSCSPRPLQIQCRHSGRGFVRAKVGSLTIYSCYI
FT                 APSVDSQTFGSIVDDILEDARGRHPIIIAGDFNAWATEWGSRLTNHRGHIL
FT                 LDAVARSGLTLANTGSANTYEKAGMGSVIDITFMSPTLTRTSAWQVSEIYT
FT                 GSDHRAITMEIRDGRFKRKNTNASTGFRDSTLDPQALILMAEDLAYDERKN
FT                 ANENAVCIKKATWSACAASMQRRRAGGNGCPPVYWWTDAIAEARRKCHQAR
FT                 RQYMRSRGRPNFASLQRLYKSLRSALKKEISASKKRCFAKLCDDADARPWG
FT                 TAYKLVMGKLAAFSRPTPTCPEQLSNIVAHLFPPSVALQPQQEPSPLQSDN
FT                 IPTFTNAAEVLAEVRRIKVEKAPGPDMIPNKALKIIMTERLEIFVRLFNAC
FT                 FAQRTFPEAWKMQRLVLLPKGSQNDNLAAYRPLCMLDTVAKVYERLICNRI
FT                 EVALSEGPGLSHNQFGFRKKRSTVDAIGLVHKLASEAIQGARWRGGSKKYC
FT                 LVTTLDVKNAFNTANWVRILSALRRLQVPSYLVDIVSEYLSNRQLLYDTEE
FT                 GRRSYAVSAGVPQGSVLGPTLWNCMYDGILNLQLPEGATIIGFADDIAVVA
FT                 VAKHLNEAEAVTNAXVEQASHWLCANGLKLAEHKTEAVLISSRKAVETAQI
FT                 IVGRTIIRSKPFIRYLGVMLDHRLTYKFHLEVTGNKAAKVATSLARMLGNV
FT                 NGPKQQSRRLLASVVKSTIMYAAPIWAPAMTSPTYSRSCRAAYRRAALRVI
FT                 CGFRTISEDSALFLAAMTPLDLLAKQAQELAGGYASMEETRARVVSAWQSR
FT                 WSGSAKGRWTYKLLPDVERWTERKHGQVDFYMTQLLTGHGCFKSYLHRFGH
FT                 ETDPFCTHCAGAIEDAEHVFFVCPRFEAIRHELSLAIGKPFTVSDLMDTLL
FT                 GSQNNWDAVSKMTVFVMKSMRRAERQRNRLXT"
XX
SQ   Sequence 4830 BP; 1292 A; 1258 C; 1324 G; 940 T; 16 other;
     gggtgatacc ccccctgcgg gtgagtgaaa gcccttttca ctcaattttc cgaattgggt        60
     gattaggtct gccatcttcg tggtcagttg actgatcagc tgcgctgcag agttaccaac       120
     tcttgcgcga gcgtnagccg agctgccaac ccgcggggaa agctctaaag caagctctcc       180
     tccgacctaa agcgtagcat acctntaggc ggcaggtagg agtcaaaaga tttaaaggat       240
     ggcgagccgt ggccctggcc cggttagcat aattaaggag gcgcctcagg gcaaggccga       300
     aagcgcagca gctaaagact ctgctgcgcc ggaagccgac ccatttagga agagcagcaa       360
     gatggggaga tcaccgacga aggtgccgaa atctccaccc atcttctcgc ctgcagtaga       420
     gcaggaacag gcgganacgg cgcatgctgg aggtcccaca gaagcggggg tcttccactt       480
     cagcgcaatt tccgagcagg gactggctcc gcttatcgcc aatggcgaca tagacggagt       540
     cgttggcgcg atcggggcga aattgtccca gctaaacagt atgatgntag gcaagacgag       600
     ggtgatggtg acgattccta tgaaggaact cgtgcagcag gtcatcgccc tccaaaagtc       660
     agcggtaagg attctggaga cggctccaaa gaatcccagt gagcaaaagc ccactcccaa       720
     gaggtcacgt gagagcccta gagccggtaa gctctcagcg ccaaaaaggc agaaggtgcc       780
     gcaaccttgc ggcacaagca ataaggtggt gaaatccatc acctacgcna gtgcagcgaa       840
     ggaaatttcc ggccctcttc cgccgagcca tgcggccaaa ggcacgaagg agggtgcgga       900
     aaaatggtcg acggttacca aaaaaccgaa gaagcagcag ccaaaaaagc agcagcagca       960
     gagaaaactc cctccacgca cagacgcact agtcgtcaag tgtggcgagg gcatgcagta      1020
     tgccgaagtg ttaaagttgg tgaaaaataa cccaacttta cagcaacaca aagattgcgt      1080
     caaaggcata cggatgactg gtaggggcga gcttctcatc aaaatgatga aaacggccga      1140
     cccagccaca tccaaactac agaaggcaat gcaggagact ctgtctgata aggcagaggt      1200
     taaagaattg aaggagctag tccaggtcga gattagggac atngcggaat tttcgtcgaa      1260
     ggacgacatc attcaggcgg ttttcgccaa ctacgagggc gatattccac cagcggccat      1320
     tccttcccta aggaaggcat acgggggcac gctaatagcc aggatgagca tcccgcccgt      1380
     tcttgcggag aagatcctag cggaaggaaa aatccgcatc gactgggcgc actgtagggt      1440
     ccgtaaaacc gtagagccaa agcgatgcta taaatgcctc gcatttggtc acatggcctt      1500
     gcactgccgt agcaaggtcg atttgtccaa agcgtgcttt aactgcggtg ggctcgatca      1560
     cgagtccaaa agctgcagca aagaggcacg ctgcctacta tgcgcaaaaa cccatggcgc      1620
     aaactgcaag caccacacgc ttagcagaag ctgcccagct taccagcagg ctctcaaagc      1680
     aaaggggaaa tgaaaattct ccaattgaat ttgaaccatt gcagagcggc tcaggacttg      1740
     cttgcacaaa cggtgcgagc cttaaaaata gacctggcca ttttgagcga gccatacgca      1800
     agtaagcacg atgggatttg gtttcaaaac acccaaggtg gtgcagcaat ttggagctgc      1860
     agcccgagac cactgcagat ccaatgccgg cattcaggca gaggttttgt cagggcgaag      1920
     gtgggtagcc ttaccatcta ttcgtgctac attgcaccca gcgtcgactc ccagacattt      1980
     ggcagcattg tcgacgacat tctggaggac gctagaggac gacaccccat catcattgcc      2040
     ggcgatttca acgcctgggc aacggagtgg ggcagtcgcc tcacaaacca tagaggccac      2100
     atattgttgg acgctgttgc ccggtcaggc ctcactctgg ctaacacagg gtcagccaac      2160
     acctacgaga aggcgggaat gggttcngtg atcgacatca cgtttatgag cccaacctta      2220
     accaggacgt cagcatggca agtctcagag atatataccg gaagcgacca tcgggccatc      2280
     accatggaaa taagagacgg gcgatttaaa cgcaaaaaca ccaatgcgtc cactgggttc      2340
     cgagattcta ccctcgaccc gcaagccctg atcttaatgg cggaagacct cgcgtacgac      2400
     gagcgtaaga acgccaacga aaatgctgta tgcataaaga aggcgacttg gtcagcatgc      2460
     gcagcttcca tgcaaaggag acgtgctggc ggaaatgggt gtcccccggt gtattggtgg      2520
     accgatgcca tagcggaggc gcgcaggaag tgccaccagg cacgaaggca atatatgcgc      2580
     tctcgaggta ggccgaactt cgcctcactc caacgcctct acaaatcctt gcggtcggct      2640
     cttaaaaagg agatctccgc gagcaagaaa cgatgcttcg caaaactatg cgatgacgca      2700
     gacgcacgtc cctggggtac agcgtacaag ctggtaatgg ggaagttggc ggccttcagc      2760
     cggcccaccc caacatgtcc tgagcagctc agcaacatag tggcgcacct cttcccgccg      2820
     agcgtagcac tgcagccaca gcaagagccc tccccgctnc aaagtgataa cattcccacg      2880
     ttcacaaatg ccgcggaagt cttggctgaa gttaggagaa tcaaagtcga aaaggcccct      2940
     ggcccagata tgattcctaa caaggcatta aagatcataa tgacggagag attagagatc      3000
     ttcgtcaggc tcttcaatgc ctgtttcgcn cagagaacgt tccctgaagc ctggaaaatg      3060
     cagagactgg tactnttacc caagggcagt caaaatgata accttgcggc ctatagacca      3120
     ctctgcatgc ttgacacagt ggcaaaggta tacgagaggc tcatctgcaa ccgcatcgaa      3180
     gttgcactgt ccgagggtcc gggcttatcc cataatcaat ttggntttag gaagaagcgc      3240
     tccacagtgg acgcgatcgg gctggtgcac aaactggcct ccgaggcaat ccagggagca      3300
     cgttggcgag gcggtagcaa aaaatactgc cttgtgacta ctctggacgt aaagaacgca      3360
     tttaacacag caaactgggt gcggatactt tcggccctga gacgtttaca ggtccccagc      3420
     tatctggtgg acatagtctc agagtatctt agcaacagac agcttctata cgatactgag      3480
     gagggccgtc gaagctatgc agtttcagca ggagttcctc agggctcggt gctgggccct      3540
     accctctgga actgcatgta cgacggaata cttaacctac agctccctga aggagctacg      3600
     atcattggct tcgcagacga tattgctgtc gtcgcagtag cgaagcacct aaatgaagcc      3660
     gaagctgtaa cgaatgcgnc cgtcgagcaa gcttcccact ggctatgtgc taatggcttg      3720
     aagctcgccg agcacaagac ggaagccgtc ttgattagca gcaggaaggc ggtagaaacc      3780
     gcccaaataa tagtgggtag gacaattata cggtccaagc ccttcattag gtaccttggc      3840
     gtaatgctgg accaccggct tacgtacaaa ttccatttag aagtgacggg caacaaagcg      3900
     gccaaagttg ccacgtccct agctaggatg ttagggaacg ttaacgggcc taaacagcag      3960
     agtaggcgcc ttcttgccag tgtggtaaaa tccacaatta tgtatgcggc accgatctgg      4020
     gctccggcca tgacctcgcc nacttatagc cgctcgtgca gggcggcata cagacgcgcc      4080
     gcactccgag tcatttgtgg ctttcggacc atttccgagg atagcgcgtt gttcctagcc      4140
     gccatgacgc ccctggacct gctcgcaaag caggcgcagg agctggccgg cggatatgca      4200
     tcgatggagg agactagagc ccgcgtggtc tcagcgtggc aaagccgatg gagtggcagc      4260
     gcaaaaggta ggtggacgta taagcttctg cccgatgtgg agcgttggac agaaagaaag      4320
     cacggacaag ttgacttcta catgacgcaa ctattgacag gacatgggtg cttcaaatcc      4380
     tatcttcata ggtttgggca cgagacggac cccttttgca cacactgtgc gggggcaatc      4440
     gaagacgcag aacatgtatt ctttgtctgt ccgagatttg aagctataag gcatgagctc      4500
     agcttagcga ttgggaagcc gttcacggtc tctgacctga tggatacgct actgggctca      4560
     caaaacaatt gggatgccgt nagcaaaatg acagtctttg tcatgaaatc catgcgtcgc      4620
     gctgaacgtc agcgcaaccg ncttcnaacc tagtttaatt actagttgcg gcttttcagg      4680
     ccatctcccc cctcgcgaag taatacccaa ggttaacccc tgcggttgtg ccgtgagaag      4740
     gaaaacggag agtaggttcg gggttttagt gggtgaaaga cccggacttc ggctcttcaa      4800
     gctttcccgc ctatacaaaa aaaaaaaaaa                                       4830
//
ID   R1-1_DGr    repbase;    DNA;    INV; 5561 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   grimshawi.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DGr.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-5561
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. grimshawi contains two subfamilies of R1.
XX
FH   Key           Location/Qualifiers
FT   CDS           187..1644
FT                 /product="R1-1_DGr_1p"
FT                 /translation="IPYRYLRVCALKKSIYRLSRVVMPPRKKRSAELEAGG
FT                 AQMVSSDDDTSQSSDAASLAEVRRRGVLSKQQLRKAASETAVDSAGKNVER
FT                 RRAEGNLVVTLRVPREKGEVCNSGTPSVSAGVPAVEEPIAACSASNALPLR
FT                 QRGTPIEKMKAISKELVECALAECMTGSLVGSMLGYATQYEELLFSLIAEN
FT                 ERLKGRLEAVRFNATNEHAGHVTAGQTRVPPAAVHRGGPMSTMSSAPEMPP
FT                 PVETWSLVVRSKTAGKTAKEVVDKVVKEVGPTLGVRVHEVKPLRDGGAIIR
FT                 TPSVAERRKIAGNAKFSEVGLEVSVKERLGPKVVVQGVHAVISPDEFMAEL
FT                 YELNLKDKMSKEAFTKGVRIASKPWSQEGSAAVNVVLEGAGLAMQTLLDVG
FT                 RCYVKWFSFRVRNFDPVVGCYRCLGFDHKVAECRLKQDVCRRCGQMGHRVA
FT                 QCSNALNCRNCAFKGRPSEHLMMSPACPVYSAIVARASARH"
FT   CDS           1589..4714
FT                 /product="R1-1_DGr_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CLQLALCTVQLWRGRVLDINMSSRLLQLNCQKSYAVM
FT                 CDVGGMIVRRGSVVALLQEPYVTNGCVRGLPAGMRVFPDSRANSAVVVNDV
FT                 SIECTVVNSTDWGVCVSLSGNFGRLFVASVYCKFGDPLEPYIAYMDEVLLL
FT                 ASSVPFILGIDANAPSPLWFSKISRSARYLNRSRGEVLAEWAVSQDVRVVN
FT                 EPSEWYTFAGPMGQSDIDVTLANVAATSVFGFQWSVLGGHGVSDHNPIEIV
FT                 ITHTSTTRESDGGNRWRTCGANWPLHGIFVSEAATQVPLSTFSAMNVDEQV
FT                 VCVNRWVTCANDRLFERHRKVNLKRVKWWSHELSVKRRSVRSLRKRFQRAR
FT                 SANAENAGQLRLAYSQCMNEYKQMLVRVKEDEWRSFLERNKDDPWGRAYKV
FT                 VRGRRREADVSGLRVGDVQLTAWSDCMNVLLNEFFPRADHQNLPPSVVGDV
FT                 DPLLDSELEVAFSMLKSRKSPGMDGFTGEMCKSVWKSIPDYMNVMYGKCMN
FT                 EGYFPNEWKCARVIVLLKSPDRVRSNPRSFRGISLLPVLGKVLERVMVERL
FT                 QERVSSQMSDRQFGFRKGRCVEDAWRFVSDSVESSNSRHILGIFVDFKGAF
FT                 DHLSWPSVLERLSECGCRELAIWESYFSGRRACAVGRHESVSLNVVRGCPQ
FT                 GSICGPFIWNLMMDTLLWQLERVCKCCAYADDLLILVEGQSRADVEASAAT
FT                 YLRVVYEWGLRVGVSLAMDKTVTMLLKGRLSRSRPPLVRLNGVSLRHVSEV
FT                 KYLGIVFGERMCFTPHIAYVKGRLLSLVGQVRRILRSDWGLSRSAARTVYD
FT                 GLFVACATYGSSVWCKAVLTVVGRKNVLACQRVMLLGCLPVCRTVSTEAMQ
FT                 VLLGVAPLDLEIRRRSLSYRIKRRLPLLQNEWLADRDVESLGLSECKKLLN
FT                 ECVLSDWQVRWDTSENGRVTHRFIREVTFAVDRPDFRLHLSFGFLLTGHGS
FT                 LNAFLHSRRLCDSPECPCGWVGETWEHVLCECPLYADLRDLSVLGITRGIS
FT                 GYDVSQVLSTCEGVRRMSEFARAAFARRRLIRGEVG"
XX
SQ   Sequence 5561 BP; 1222 A; 1118 C; 1771 G; 1450 T; 0 other;
     cagtacgagt tcagacttgg gaacgaacgg acgtgtcttt gctgtcgcgg ttaaacagag        60
     ataacggtac aacaagtaac gggatcttgt ttactttcca gcgcgtttac agttgcgctg       120
     ttctacatct gctttcgcat ttgcgttcgc tgtgcgaaaa ctgtacattt tttcgtgtgc       180
     gtgtaaatcc cttatcggta cttacgtgtg tgtgcgttga aaaaatctat ttatagattg       240
     tcacgtgttg tgatgccgcc acgtaagaag cgttcggcgg agcttgaagc ggggggggcg       300
     cagatggtgt cgtcagatga cgacacgtcg cagtcctctg atgcagcgag cttagctgag       360
     gtaaggagga ggggtgtgct gagtaagcaa cagttgagga aggcagcttc cgagacggct       420
     gtagactcag caggtaagaa tgtcgaaagg cggcgcgcgg agggtaatct ggtggttacc       480
     ctcagagtgc cgagagagaa aggcgaggtg tgcaattcgg gcacgcctag tgtgagtgct       540
     ggtgttcccg ctgtggagga gcccattgct gcgtgttcgg cgagcaatgc gttaccgttg       600
     aggcagaggg gaacgccaat agaaaaaatg aaagcgataa gcaaagaact ggtagagtgt       660
     gcactcgctg agtgtatgac gggttcactg gtcggtagca tgttaggcta cgcgacgcag       720
     tacgaggaat tgctgttttc gcttatagcg gaaaatgagc gcctcaaggg gcgtttggag       780
     gctgttcgct ttaatgcgac caatgagcat gctgggcatg tgacagctgg ccaaacgcga       840
     gttccgcccg cagccgtgca ccgggggggt cccatgtcga caatgtcgtc tgccccggag       900
     atgcctccac cagtcgagac ctggtccttg gttgtgcgca gcaaaactgc tggtaagacc       960
     gccaaggagg tggtggataa ggtagtgaag gaggtagggc ctaccttagg tgtgcgcgtc      1020
     catgaggtga aacctctgcg ggatggcgga gcgatcattc gcacaccatc tgttgccgag      1080
     cggaggaaga ttgcggggaa cgcaaaattc agcgaagttg gtctggaagt gagtgtgaaa      1140
     gagagactgg ggccgaaagt ggtcgtgcag ggcgttcacg ctgtaatctc gcctgacgag      1200
     ttcatggctg agctatacga gctgaacctc aaggacaaga tgtccaaaga ggccttcact      1260
     aaaggtgtcc gcattgcgag taagccttgg tcgcaagagg gtagcgcagc agtgaatgtt      1320
     gttctcgagg gtgctggcct ggccatgcaa accctcttgg atgtcggacg ctgctacgtg      1380
     aaatggttct catttcgtgt gaggaacttt gacccggtag tgggttgcta tcgctgcctt      1440
     ggcttcgacc ataaggtagc ggaatgccgg ctcaagcagg acgtctgtcg tcgctgcggc      1500
     caaatgggtc accgcgtggc tcagtgcagc aatgcactga actgtcgcaa ctgcgcattc      1560
     aagggtaggc cgtctgagca tctcatgatg tctccagctt gccctgtgta cagtgcaatt      1620
     gtggcgcggg cgagtgctag acattaatat gtctagcaga cttcttcagt tgaactgtca      1680
     gaagtcatat gcagtcatgt gcgatgtggg tggcatgatt gtgagaagag gcagcgtagt      1740
     tgccctgctg caggaaccct acgtgacaaa tggttgcgta aggggattgc ccgcgggaat      1800
     gcgagtattt cctgacagca gggccaactc tgctgtcgtt gtgaatgatg tcagtatcga      1860
     atgcactgtt gtgaattcga ctgactgggg tgtgtgtgtg agccttagtg gcaattttgg      1920
     tagattgttc gtagcaagcg tatactgtaa gttcggggat cccctcgaac cgtatatcgc      1980
     gtatatggat gaggtgctac tactggctag tagcgttccg ttcatccttg gtattgacgc      2040
     gaatgcaccg tcccctttgt ggttcagtaa gatatctaga tctgctaggt atctgaaccg      2100
     ctctaggggt gaggtgctgg ccgagtgggc tgtgtcccag gatgtccggg tcgttaacga      2160
     acccagcgag tggtacacgt ttgcgggccc gatgggccag agtgacattg atgtcactct      2220
     tgcgaatgtg gcagcaacga gtgtgtttgg ttttcaatgg agtgtactgg gtggacacgg      2280
     tgtgagtgac cacaatccga ttgagattgt catcactcac acttccacca cgcgtgaaag      2340
     tgatgggggt aaccgctggc gcacttgtgg tgcgaattgg ccccttcatg ggatttttgt      2400
     gagtgaagcg gcaacgcaag ttccgcttag cacttttagt gcaatgaatg ttgacgagca      2460
     ggtcgtatgt gtgaataggt gggtgacttg tgcgaatgat cgcttgtttg agaggcaccg      2520
     aaaggtcaac ctcaaacgag tgaagtggtg gtcgcatgag ttgagcgtta agcgtcggtc      2580
     agtgcggtcc ctaaggaagc gattccaaag ggccagatct gccaatgccg agaacgctgg      2640
     ccaacttagg ttagcttaca gccagtgtat gaatgagtac aagcaaatgc ttgtaagagt      2700
     gaaagaggat gaatggcgtt cctttttgga gcgcaataag gacgacccct ggggtcgtgc      2760
     ttataaagtt gtgagaggta ggcgtaggga agcggatgta agtggcctcc gtgtcggtga      2820
     cgttcagtta acggcatgga gtgactgcat gaatgtctta ttgaatgagt tcttccctag      2880
     agcggatcat cagaacttgc caccgagtgt ggttggtgat gttgacccgc tcctggatag      2940
     tgaattggag gtggctttct cgatgttaaa gtcgaggaaa tcacctggta tggatggttt      3000
     tactggggaa atgtgtaaga gtgtctggaa gtcaattcca gactatatga atgtaatgta      3060
     tggaaagtgt atgaatgagg gatatttccc caatgagtgg aagtgtgcaa gggtgattgt      3120
     gcttttgaag tcgcccgata gggtcaggag caatcctcgt tcctttcggg gcatcagtct      3180
     cctaccagtg ctgggtaaag tgctggaaag agtcatggta gaaaggctcc aagagagagt      3240
     gagtagccaa atgtcagatc ggcaatttgg ttttaggaag ggcagatgtg tggaagatgc      3300
     gtggagattt gtaagtgact ccgttgagtc cagcaactcc aggcatattc taggcatctt      3360
     tgttgatttt aaaggggcgt ttgaccacct gagttggccg agtgtgttgg agaggttgag      3420
     cgaatgtggc tgccgggaat tggctatttg ggagagctat ttctctggca gacgtgcgtg      3480
     tgctgtaggt cggcatgaaa gtgttagcct gaatgtggtt cgtggctgcc cacagggatc      3540
     catctgtggt ccatttatat ggaacctcat gatggatacc ttgctatggc agctcgagcg      3600
     tgtatgcaag tgctgtgcgt atgcggacga cctgctcatt ctggttgagg ggcaatcgcg      3660
     agcggatgta gaggcaagtg cggcaacgta cttgcgagtt gtgtatgagt ggggtctcag      3720
     agttggcgtc agtctggcaa tggacaagac cgtgacaatg ctgcttaagg gcagattgtc      3780
     gcgtagtcga cctccattgg ttaggctaaa tggcgtcagc ctgaggcatg tgtcggaggt      3840
     gaaatacctc ggcattgtgt ttggcgagag gatgtgcttc actcctcata tcgcatatgt      3900
     gaaagggcga ttgcttagtt tggttggaca agtgcgtcgg attttgagaa gtgactgggg      3960
     cctcagcaga tctgctgctc gcaccgtata tgatggtcta tttgttgcct gtgcaactta      4020
     tggatcgtcg gtatggtgta aggcagtctt gactgttgta ggcagaaaga atgtgctggc      4080
     ttgccagcgt gtgatgttgt tagggtgtct gcctgtatgc cgcactgtct ccacggaggc      4140
     aatgcaggta ttgttaggag tagcccctct ggacttggag atcaggcgtc gaagcctgag      4200
     ctataggatc aagaggcggt tgccgttgct gcagaatgaa tggttagcgg atagggatgt      4260
     ggagagttta gggcttagtg agtgcaagaa attgctaaat gagtgtgttc tgtctgactg      4320
     gcaggtcaga tgggatacta gcgagaatgg gagggtcact cataggttta ttcgggaggt      4380
     cacatttgct gttgaccgtc cagacttcag gcttcacctg agttttggat ttttgttgac      4440
     gggccacggg tcgctgaatg cattcttgca ttcaagacga ctctgtgata gcccggaatg      4500
     cccttgtggc tgggtgggag agacatggga acatgtcctc tgtgagtgcc ctttgtatgc      4560
     agatctgcga gatctaagtg tgcttgggat aacgcggggt attagtgggt atgacgtaag      4620
     tcaagtgctc tccacttgtg aaggggtaag gagaatgagt gagtttgcac gggctgcatt      4680
     tgccagacga cgtctcatac gtggagaagt tgggtgaatg ttgaatgtct gttgggggta      4740
     tgaatgtggg ggtgtgtgaa tggattgctg agttgcgttc gggggtcacc agtcccggct      4800
     ttatggagca aaactggaag tatccttgtg gtacgagttc tgaccggagg actgatccgg      4860
     taccacgggc gttggggtgt tcaggggcgg tctcgaccct cggctctcag cgctgttgtt      4920
     ggggatatca gctggccgcc tagcggtctg aattcgttca gttattaatg ccgctgtttg      4980
     cggaagagga aggaataggc ctcgctcccc acagtgagaa aaccatgtcc ataaagcatg      5040
     gcgtatactg ttccatctgc gatttggtgt ttacatcaat tcgcattcta ttccgtacag      5100
     tgatatcttt ccttcttttt gggtcaccaa cccgtaactg tttggagttt aaattgggag      5160
     taccctatgg gtacgaggct tgaccggagg cttgtttccg gtaccacggg taatcaggag      5220
     cccgcggaac cttgtttccg tcctggtttt tggttgcggc ccttcgggga gtttcgtggt      5280
     ggctgtggtt tgacacccaa atgcgggtag agcaattgac tcggcgtgtt gttgcgctat      5340
     acaacagggt gccgtgaccc atagatcgga agtcgtttta ggtaggcggc cctccaaacc      5400
     aaggtggaag ttcacgacca aacagtagtg acttcaaatt ggtacctgcg gaatattagt      5460
     tccaatgggg cggtaattga cgcttaaatt aattcctgtg cttagcaccg tgagattaag      5520
     ccatcccggc aggtgctcac gttaaaccaa ttgactttaa t                          5561
//
ID   R1-1_DHyd   repbase;    DNA;    INV; 5807 BP.
XX
AC   .
XX
DT   09-OCT-2019 (Rel. 25.08, Created)
DT   09-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila hydei genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-5807
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2452-2452 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Seen in tandem.
XX
FH   Key           Location/Qualifiers
FT   CDS           461..1525
FT                 /product="R1-1_DHyd_1p"
FT                 /note="zinc finger."
FT                 /translation="MIAMRRWQLCWLEPPLLPPSLPPPVLLLLPLLLPPVV
FT                 AAPVVAAPAAVTPAVTAPAAATPAAAAASSAAAAAATSSLTCSNEMVQRML
FT                 AIEQELRRAVVRDGVPSNVALSVLDAGARYQELVLSLYGRVVELEAQSRAR
FT                 PQAVAPFAVPAANAAIARADAPIAAPRTRKAAETWSAIVTSSNPEETPQQV
FT                 AERVRKDVAPALGVRVHEVRELKRGGAIIRTPSSGEIRRVVANPKFKELGL
FT                 DIKRTAALRPRITVLDVDSCITVKQFMDGLFKNHFQGHMSCAAFEKSVAIA
FT                 SKAWKQGDGPITSSWSWSRRPWISWRNTTGSTWIGSPSAGDRWCARMRATG
FT                 VSALTTRSPNAG"
FT   CDS           1701..4805
FT                 /product="R1-1_DHyd_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSITQANCGRSRAAVIELGVRMRNTGSKFALIQEPY
FT                 VDRGGRITGLPAGMRVFSDRRNKAAIVVDDQEVVCMPVSSLITEYGVCVSV
FT                 SGNFGSIFLTSVYCQFNTEIEPYLLYMDAVLLLASRTPVIYGLDANAVSPL
FT                 WFSKLPERSRGYLNRQRGELLANWVQGSRAGVLNVRSSVYTFDNRRARSDI
FT                 DVTIASDSASTWATYDWNVSEWDLSDHNIITVVVTPDPLSTVESYAPVPSW
FT                 KLQRADWRRFSDELMTASLELPLEEFHQMASDEQVSALRSLVHQVSDTVLG
FT                 RQQLQARRRVGWWNAALTDARRELRRARRRLQHARRNHSDSADDLATYFRI
FT                 TRKEYVRMMLKVKEEDWRRFVGEHQEDPWGRAYRICRGRKTCTDLGCLRWN
FT                 DEQVVTWHDCANVLLRSFFPAAERPVDVTIPSEVPPALDRFEVETCIARVR
FT                 SKRSPGLDGITGGMVKAAWRAIPEYLTALFSRCLAEGYFPTEWKRPRVVAL
FT                 LKGPDKDRSDPASYRGICLLPVFGKVLEGIMVNRVKEVLTDESRWQFGFRP
FT                 GRCVEDAWSHVVSSVEASSARYVLGIFVDFRGAFDHVEWDAALRRLSDLGC
FT                 REVGIWRSFFSDRKASIVSSFGEVSVDVTRGCPQGSISGPFIWNILMDTLL
FT                 HRLEAECTLSAYADDLLLLVEGNSRSQLELKGAQLMELVGGWGIEVGVSVS
FT                 ATKTVTMLLKGRLSSGRPPAVSFAGANLRYVTQCRYLGITVGERLSFLPHV
FT                 ASLRDRLAGVVGALTRVLRVDWGLSPQARRRIYAGLMVPCALFGAXVWYKV
FT                 VMRLVGARRALKSCHRLILLGCLPTCRTVSTDALEVLAGAPPLDLAAMRIA
FT                 MQSKMKRNYPMVEGDWLYDQDVSTLDRNMRRALLDERLLREWQLRWDDSEH
FT                 GRVTHKFIPDVSFVYSRPDFKFTMHASFLITGHGSMNAFLHARGLSETAEC
FT                 PCGDPVEDWQHILCVCPLYADVRDPEGLGIQQNTSGDWTFADTLTTNESMQ
FT                 LLEDYARIVFSRRRMLLDAGAGPGRPVPD"
XX
SQ   Sequence 5807 BP; 1277 A; 1538 C; 1693 G; 1292 T; 7 other;
     cagtttgtgt tcgacagtcg ccgcgagtgg acgtgcttac gcttgcctgc gtagawttta        60
     ttgccgctta gaaatctaaa gagtgcttaa attgtcttct cggcgataag ctgtgcgcga       120
     gtaactgtat cttacagtta cagttgctgc gccgtgattg gtcggccaat cagaaacaaa       180
     ctaaaaagtg ckgcatactt ttgcgctgca aagatataaa aaagkgttgc ataccctaag       240
     gctgcgtttc ttctgcctts tgttgcctag cgcctaggca tggagagcga cgctagcagc       300
     agtgctgcca gctcggcgcg atcagtgtcg ggccgtaaga agcgcgggcg ccccgctgcg       360
     gtggcgcgcg tgtcaacgcg cttgatgtcg gacgacgtca tgccgccacc gctggattcg       420
     cccccgcgga agctacgtgc gccagccttg agctcgggcg atgatagcga tgcgtcgctg       480
     gcagctgtgc tggctggagc caccactact gccgccgtcg ctgccgccgc cagtgctgct       540
     tctgctgccg ttattgctgc cccccgttgt tgctgccccc gttgttgctg cccccgctgc       600
     tgtcacscct gctgttacag cccccgctgc cgctactcct gctgccgctg ccgcttcctc       660
     tgctgctgct gctgccgcca catcaagttt gacctgttca aacgagatgg tccaacggat       720
     gttggccatc gaacaagagc tcaggagagc tgtagttcgc gatggagtgc ccagcaatgt       780
     ggcactaagc gtgctggatg caggagcacg ctaccaggag cttgtcctga gtctgtacgg       840
     cagggttgtg gagttagagg cgcagagccg tgcccgccca caggccgttg cgcccttcgc       900
     tgtccccgct gccaacgccg caatcgcccg cgctgacgct ccaatcgctg caccacggac       960
     ccgcaaggca gcggagacgt ggtcagcgat tgtgactagc agcaatcctg aggagacgcc      1020
     tcagcaagtc gctgaacgcg ttcgcaagga tgttgccccc gctcttggtg tccgcgtaca      1080
     cgaggtgcgt gagctgaagc gaggtggtgc gataatccgc acaccgtcgt caggagagat      1140
     ccggagagta gtggctaacc caaagttcaa agaacttggg ttagatatta agagaaccgc      1200
     agcgctcagg ccaagaataa ccgtcttgga cgttgacagt tgcatcactg tcaagcagtt      1260
     catggacggt ttgtttaaaa accactttca agggcacatg tcgtgtgctg cttttgaaaa      1320
     gtctgttgcg atcgcctcca aggcgtggaa gcaaggcgat ggccccataa catccagctg      1380
     gagctggagc agaaggccct ggatatcctg gaggaacacg acaggatcta cgtggattgg      1440
     ttcgccttcc gctggcgatc gatggtgcgc acgtatgcgt gccacaggtg tgtcagcttt      1500
     gaccacaaga tcgcccaatg ccggatgaaa gagcagatct gccgtcagtg cggacagtcc      1560
     ggacaccgag ccgggaaatg ctgcaatcct gtgcactgca ggaattgcag cttcaagggg      1620
     ctaccctgtg cgcatttaat gctctcagcg gcttgcccga tttacggagc tgtgctcgcc      1680
     aaggtggctg ctagacacta atgtttagca tcacccaggc aaactgcggt cgcagtcgag      1740
     ctgccgtgat agagctcggt gtcaggatga ggaacacagg atccaagttc gcactgatcc      1800
     aggagcctta cgttgatcgt gggggaagga tcaccggatt accggcaggc atgcgagttt      1860
     tctccgaccg ccgcaataaa gctgccatag tcgttgacga ccaggaggtc gtctgcatgc      1920
     ctgtctcgtc gctcatcact gagtacggcg tatgcgtgag tgtgtctggg aactttggct      1980
     caattttcct cacctccgta tactgccagt tcaatactga aattgaaccg tacctgctgt      2040
     acatggatgc ggtgctgctg ctagccagcc gcacgcctgt catctatggc ctagatgcga      2100
     acgcagtatc ccccctgtgg ttcagtaagc tccccgagcg ctctcggggc tacttgaaca      2160
     ggcagcgggg tgagctgcta gcaaattggg tacagggcag ccgagccgga gtgctaaatg      2220
     tccgcagcag cgtgtacacg ttcgataatc gcagggcaag aagcgatatc gacgtaacga      2280
     tcgccagcga ttcagcgtct acgtgggcca cgtatgattg gaatgtaagc gagtgggatc      2340
     tgagcgatca caacatcatt actgttgttg taacgccgga tccattaagc actgttgaga      2400
     gctatgctcc ggtgccctcg tggaaactcc aacgggctga ctggcgacgt ttcagtgatg      2460
     agctgatgac tgcatcgttg gaacttcctc tggaggagtt tcaccagatg gcatctgatg      2520
     agcaggtctc cgcactccgc tccctggttc atcaggtgag cgacactgtg ttgggacgcc      2580
     aacagctaca agccagacgt cgtgtgggtt ggtggaatgc cgccctcact gatgcacgtc      2640
     gcgagctcag gagagcccga cgaaggcttc agcatgcgcg tcgaaaccac agtgacagtg      2700
     ctgatgacct cgccacgtat ttcaggatca cccgaaagga atacgtgagg atgatgctta      2760
     aggtgaaaga ggaagactgg agacgatttg tcggcgagca ccaggaagac ccatgggggc      2820
     gtgcctaccg gatatgccga ggccgcaaga cgtgcaccga tctcggttgc cttcgctgga      2880
     atgacgagca agttgtaacc tggcacgact gtgcgaacgt cctgctccgc agcttctttc      2940
     ccgctgcgga gaggccagtg gacgttacca ttcctagcga agtaccccca gcccttgaca      3000
     ggttcgaggt agagacatgc atcgccagag ttcggagcaa acgctcacct ggtttagatg      3060
     gcataactgg gggtatggtc aaagcggctt ggcgcgccat ccctgagtac ttgacagcgt      3120
     tgttttcccg ctgcctggca gagggatact tccccactga gtggaagcgc ccacgtgtgg      3180
     ttgcgctcct caagggccca gataaggaca ggagcgatcc agcgtcctat cggggtatct      3240
     gcctgttgcc tgtcttcggc aaagtactcg aagggatcat ggtgaaccgt gtgaaggagg      3300
     tgctcacgga cgagagtcga tggcaattcg gctttcggcc cgggcgctgc gttgaggatg      3360
     cctggagtca cgtcgtgagc agtgtcgaag ccagctcggc tcgatatgtg ctcggtatct      3420
     tcgtggactt caggggtgcg ttcgaccatg tcgaatggga cgcagctcta cgccgactat      3480
     cggatctagg atgcagggaa gttgggatct ggcgcagctt tttctcagac cgaaaggcaa      3540
     gcatcgtcag cagcttcggc gaagtcagtg twgatgttac acgtggctgt ccgcaggggt      3600
     ccatcagtgg tccatttatt tggaacatcc tgatggacac tcttctgcat cgccttgaag      3660
     cggaatgtac actaagtgca tatgctgacg acctcttgct gctcgtagag ggaaattcca      3720
     gatcccaact ggagctcaaa ggtgcccaac taatggaatt agttggagga tggggtatcg      3780
     aggtaggcgt ctcagtctcg gcaacgaaga ctgtgacgat gctccttaag ggaaggctgt      3840
     catctggcag accgcccgcc gtaagctttg caggagcaaa cttgcggtat gtgacgcaat      3900
     gccgttacct tggcatcacg gtcggcgagc ggttgagttt tctcccgcat gtcgcgtcct      3960
     tacgcgatcg gctggccgga gtcgtcggag ccctgacccg tgtgctacgc gttgactggg      4020
     gactcagtcc gcaagcacgg cgaaggatct atgccggact catggtgcct tgtgcgctat      4080
     ttggtgccwc ggtttggtac aaggtggtga tgagactagt cggcgccagg agggcgctca      4140
     agtcctgcca ccggctcatc ctattagggt gcttgccaac gtgccgaacg gtatctacgg      4200
     atgcccttga agttcttgct ggagctccac cgctggacct tgcggcgatg cgtatagcaa      4260
     tgcagtcgaa gatgaagcgt aactacccta tggtagaagg cgactggctc tacgatcaag      4320
     acgtttcgac ccttgatcgt aacatgagga gagccttgtt ggacgaacgc ttactgcgtg      4380
     agtggcaact ccgatgggat gacagcgagc acggccgtgt gacgcataag ttcatcccgg      4440
     acgtaagctt cgtctacagc cgcccagact tcaagttcac gatgcatgcc agtttcctca      4500
     taactggcca tggctcgatg aatgccttcc tgcatgcgcg tggtctaagc gagactgctg      4560
     aatgtccatg tggcgatccc gtagaggact ggcagcacat cttatgtgtc tgccccctct      4620
     atgcggatgt gcgagacccg gaagggcttg gaattcagca gaatacatcc ggtgattgga      4680
     ctttcgctga caccctgacg accaacgaga gcatgcaact gcttgaagat tatgctcgca      4740
     tagtcttcag caggcgacgc atgctgcttg acgctggagc tggacctggt cgaccagtac      4800
     cggactgacg taagtcaaaa ctggtagtag catttactac gaaaggccta ccaatgcctc      4860
     aaattggtag acgatctccc cggagtgaat cgcaggtcca accaaagtcc ttaatttggt      4920
     agacaaaatc cattcggacg agtcgaaggg cagaccaaag cctcaatttg gtagattttc      4980
     cttataacga ggaaagtcga gggtcatacc aaagtcccta aatttggaag acgaatccta      5040
     atggactagt cgaaaggccg accatagcct caatttggca gacaaaatcc ccgcgatgag      5100
     tcgcagggcc taccagagcc ctaatctggg agacgtgccc ttgtggacac atcgaaggtc      5160
     ttaccaaagt ccttaagttt ggtagacaaa atccattcgg actagtcgaa gggcaaacca      5220
     aagcctcaat ttggtagact ctcttctctc cggagaaagt cggaaggctg accaaagtcc      5280
     tcaatttggg agacaaatcc ttatggacta gtcgaagggc ggaccaaagc ctctcaattt      5340
     ggtagactca ctctttcggg agtctgtcgc tggtgtctac ccagttcctg gttgtcggaa      5400
     accaaaatgg gaagcagtct ctgactgcga acagccgatc aaagctgtta atttgaacca      5460
     cgggatgggc tggtggccaa ggccagccca attgaggttg gcccccttta gtgggagtat      5520
     cgtggtggct gtggttgata aaatgttgtg gttcaacgta aagttggacc acagccggaa      5580
     gctgtccccg cagtcagcag aggttaagat aggcctcgcc tctacccaag agggaagcca      5640
     tgcccgacag catgaattca aacttggtac ctaaaagagt ttcttttagg ggcgttggtg      5700
     gacgcatcgt attcacccgc tgtactttgt gtcacatatg tggctcaaac gcgtaccgtg      5760
     gttgtaaacc ccctcggggt acacgccacg ataaataaat atcagga                    5807
//
ID   R1-1_DK     repbase;    DNA;    INV; 4865 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4865
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1355-1355 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           199..1725
FT                 /product="R1-1_DK_1p"
FT                 /translation="MEEENPFVGRXALAXXPXAPRDEEEAAAFGRSSKLSR
FT                 XPXXHEXQEGGRGXGXTPPPKRLRDPASPAGSPRTTPAKKSKASEEAACLQ
FT                 DLQEMGXLLQEVSXRMMDKSTRHITVPLRXMIARVXTLHSSILVASRAAAA
FT                 GVSDRQESRVASNLCXKCAQXTRSADKEQQTVXAWKKEASVQTEPWRRLSQ
FT                 TDAPGLPAPVLAPPPXRLAQQKSAKAPKKPRAXPPPAAHGAXXQXXXARKP
FT                 ESQANXENDWEVVARKPRTARRTRPDAVIVHASGKSYSEVLAMVTRREDKQ
FT                 LSDLGRCVXKVRRTNNGNLLLEVAKGSAESATTMRESIEKVLGDXASVRAT
FT                 TEDSKVLVLEVRNIDPIATKQEVCAALAGQFNFEAERVKVRSMRRSFAETQ
FT                 TAIVSLPVSLAKAVLHRGEVRIGWTICRIRERLGPVRCFRCLEPGHIAIHC
FT                 KGPVDRSGCCINCGEPGHKAASCNKEPSCFICSAAGRKETRHKAGARGCPA
FT                 SNSGYANPKPACS"
FT   CDS           1626..4250
FT                 /product="R1-1_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLCGRKEGDEAQGRRQGMSSLEQWVRESQACMQLIQL
FT                 NLNHCRAAQDLLSQTVRELGSEVAVLSEPYRVGSSRVWATDRSGKAALWLC
FT                 GADAPEMRDTKAAEGFVRANVGGTWLYSCYLAPSLSLEAFGRILDELSSDL
FT                 RGRSNVVVGGDFNAWAMEWGSSRTNARGRAVLETFASLDVVLLNEGSRQTF
FT                 SRAGVGSVIDLTYVSSALASRARWKISEAYTASDHEAIECSIGAAHRTSGS
FT                 LLPDRKAFRQDTFRPRDFANALEGFTAGEADGANETADKLAWAVDGACSQS
FT                 MLLRRPFRKHHSPVFWWSEEIADLRRKCHRSRRLLQRARGTPRLLACNDRY
FT                 KAARKELKTAIKNSKRECFLKLCDAAEEDPWGGAYRMVVKRLNAGGCAPTD
FT                 PATLERIVGSLFPSGRQVLICPSTELGDIRWVTEAEVLLAGRSLKPKKAPG
FT                 PDAIPSRATKLTLSLLTSEVAGLFNKCLLEGTFPDRWKRQRLLLLPKPGKP
FT                 PGEASSYRPICLLDTIGKVFERVISTRLSQAIEAAGGLSPEQYGFTKGKST
FT                 LDAIAKVVKLAQDAIAGTRWKGGSKSYCLVVTLDIRNAFNSADWSRTLESL
FT                 RNFNIPGYLLNVAHSYFSNRVLTLDTSMGPKEHNVSAGVPQGSVLGPLLWN
FT                 AMYDGVLRLPMPVSTNLVGFADDVAIVVVAKELASVEARADTAIQAVESWL
FT                 AVAGLELAAHKTEAVLISSRKAVETASVLVGGTRIRSQRAIKYLGVIIDTR
FT                 LSFKEHLEYVHQKASGTAGALSRMLPNTRGPRQYTRKLLSSVVTAQILYAA
FT                 PVWAEAASVKSYMRGVEATYRLCAIRIACSFRTISEDAALVIAGQVPLTEL
FT                 IRERKEISESLQDRRSPRPTLR"
XX
SQ   Sequence 4865 BP; 1063 A; 1367 C; 1606 G; 771 T; 58 other;
     caacccgggg ccgcgcaagg tcgcgctgct ggcaggcgga aaaaggtctc ggatctgacc        60
     aakccccgat tccccgccta ggcggtgtcc cgakcaasgg gcttcgggga ccgagttggg       120
     gcggtatatc ccccgtcgta gagccagggg gaaattcctg gccagcgtgg gagccckgcg       180
     ckgaccgacw agccggmtat ggaggaggaa aaccccttcg tgggcaggwc wgcgctggcg       240
     agkwcgccaw gtgcaccgag ggacgaggag gaggcggcgg cgttcggsag gagcagcaag       300
     ctctcccgww cgccacmgmt gcacgagscc caagaaggwg ggcggggcwc gggckctacg       360
     ccgcccccca agaggttgmg ggaccctgct agcccggctg gttcaccgag aactacgccg       420
     gccaagaaga gcaaggcgtc wgaggaggca gcctgcctgc aggatctsca ggagatgggc       480
     aawctmttgc aggaggtctc wkccagaatg atggacaagt cgacgcggca tattaccgtg       540
     ccgctgaggg amatgattgc cagagtgamg accctgcact cgagcatcct agtggcaagc       600
     agagcggccg cggcaggtgt cagcgacagg caggagagcc gggtcgcaag caacctgtgc       660
     ckgaaatgcg cccagawcac mmggagcgcs gacaaggagc agcaaacggt gwccgcctgg       720
     aagaaggagg cwtcggtcca aaccgagccw tggagaaggc taagccagac wgatgcgccg       780
     ggactwcccg caccggtgct ggccccgccm cccmctcgtc tagcgcagca gaaaagcgca       840
     aaggcgccca agaagccccg wgcgaakccg ccaccggctg cscacggtgc wkcggwgcag       900
     cakwkgmcgg cccggaagcc tgagagccag gcgaaccscg aaaacgactg ggaggtcgtg       960
     gcgaggaagc cgagaacagc gcgccgcact cgcccggacg ctgtcattgt ccacgcgagc      1020
     ggcaagtcct acagcgaggt gctcgcaatg gtgacgagga gagaggacaa gcagctgtcg      1080
     gacctgggac gctgtgtgkc aaaggttcgc cgaaccaaca acggcaacct gctcctggag      1140
     gtggcgaaag gtagcgccga gagcgccacg acaatgaggg agagcatcga gaaggtgctc      1200
     ggagatwcag cgtcggtgcg cgcaacgaca gaggactcaa aagtcctcgt cttggaggtg      1260
     cgcaatatcg acccgatcgc gacgaagcag gaggtctgcg ccgcmctcgc gggccagttt      1320
     aacttcgagg cggagagggt gaaagtgcgg agcatgcgcc gcagctttgc tgaaacccaa      1380
     actgcgatag tcagccttcc cgtatccctt gccaaagccg tcctccatag aggtgaagtt      1440
     cggattggat ggaccatctg caggatccgg gaacgacttg gtcccgtgag gtgcttcagg      1500
     tgcctagaac ctgggcatat tgcgatccac tgcaagggcc ctgtggacag gagcggttgc      1560
     tgcattaact gcggcgagcc gggacacaag gcggcttcgt gcaacaagga gccgtcwtgc      1620
     ttcatatgct ctgcggccgg aaggaaggag acgaggcaca aggcaggcgc caggggatgt      1680
     ccagcctcga acagtgggta cgcgaatccc aagcctgcat gcagttgatt caactcaatc      1740
     tgaatcactg cagggctgcg caggatctcc tgtcgcagac ggtgcgggag ctgggctcgg      1800
     aggtggcagt cctgagcgaa ccctacaggg tcggtagcag ccgcgtctgg gccactgacc      1860
     gctctggcaa ggcggccctg tggctctgcg gagcggatgc tccggagatg cgcgacacca      1920
     aagcagcgga aggcttcgtc cgggcgaacg tcggcggcac ttggctgtac agctgctacc      1980
     tggcacccag tctctcactg gaggcgttcg gcaggattct ggacgagctg agcagcgatc      2040
     tgcgtgggcg gagcaacgtc gtggtcggcg gcgacttcaa cgcctgggcc atggaatggg      2100
     ggtcctcccg gaccaacgcc agaggccgag cggtgctgga gaccttcgcc tccctggacg      2160
     tagtccttct gaacgaaggc tcccggcaga ccttcagcag ggccggggtg ggctcggtaa      2220
     tcgacctcac ctatgtcagc agtgcgctgg ccagccgcgc ccgatggaag atcagcgagg      2280
     cctataccgc cagcgaccac gaggctatcg agtgctcgat aggcgccgcg catcgcacga      2340
     gtgggtccct actcccggat aggaaggcgt tccggcaaga caccttcagg ccgcgggatt      2400
     ttgcaaatgc cctcgagggc ttcacggcag gcgaagcaga cggagccaac gagacggccg      2460
     acaagctggc atgggccgtg gacggcgctt gcagccaaag catgctactg agaaggccgt      2520
     tcagaaagca ccactccccg gtgttttggt ggagcgagga gatcgcggac ctgcgccgta      2580
     aatgccaccg cagcagaaga ttgctgcagc gagctagagg caccccgcgc cttcttgcgt      2640
     gcaacgaccg ctacaaggcg gcaagaaagg agcttaagac tgccattaag aacagcaaac      2700
     gagagtgctt cctcaagctg tgcgacgccg ccgaggagga tccatgggga ggagcctaca      2760
     gaatggtagt aaagaggctt aatgcgggtg gctgtgcccc aaccgacccg gcgacgctgg      2820
     agaggatagt tggctccctg ttcccgagcg gtcggcaggt cttgatctgc cccagcaccg      2880
     agttgggcga catccgttgg gtcacggaag ctgaggttct ccttgccggt agaagcctga      2940
     agcccaagaa ggctccgggg ccggacgcga ttccgagcag agcaaccaag ctgactctat      3000
     cgctgctgac gtccgaagtt gccggcctgt tcaacaagtg ccttctggag gggacgttcc      3060
     ccgacagatg gaaaaggcaa cgtctgctgc tgctgcccaa gccaggcaag ccaccaggag      3120
     aagcatcgtc ctacagaccg atctgtctgc tggacacgat cggcaaggtg ttcgaaaggg      3180
     tgatctcaac ccggctgagc caagccatcg aagccgctgg tggactctcc ccggagcaat      3240
     atggcttcac gaaggggaag tctacgctgg acgccattgc aaaggtagtc aaattggcgc      3300
     aggatgccat tgccggaacc aggtggaaag gaggaagcaa gtcctactgc ctggtggtca      3360
     ccctggacat caggaatgcc tttaactcgg cagactggag ccgtacgcta gagtccctga      3420
     ggaactttaa cattcctggg tacttgctga acgtagctca cagctacttc agcaacaggg      3480
     tactcacgtt ggacacgagc atgggtccca aagagcacaa cgtctcagcc ggagtcccgc      3540
     agggctccgt cctgggtcct ctcctttgga acgcaatgta cgacggcgtg ctgaggcttc      3600
     cgatgccagt cagcaccaac ctggttggat ttgcggacga cgtcgctata gtggtggtag      3660
     caaaggagct agcatctgtg gaggcgcgcg cggacacggc catccaagcc gtagagtcgt      3720
     ggctggcggt tgcaggtctg gagttggcgg cccacaagac ggaagcggtc ctaatctcga      3780
     gtcggaaagc ggtggagact gctagcgtgc tggttggagg gacgaggatc cggtcgcaga      3840
     gggcgatcaa gtacctgggc gtcatcatcg acacccggct gtccttcaag gagcacctgg      3900
     agtacgtcca ccaaaaggcc agcggcacgg ctggagcgct ctccaggatg ctgccgaaca      3960
     ctagaggtcc aaggcagtac acgaggaaac tcctmtcatc ggtggtgacc gcgcagatcc      4020
     tgtacgcggc accagtttgg gccgaagctg cttcggtcaa aagctacatg cgaggagtgg      4080
     aggcgaccta ccggctatgt gccatccgga tcgcatgctc gttccggaca atttcggagg      4140
     acgcggcact agtgatcgca gggcaagtcc cactgacgga gctcatcagg gagaggaagg      4200
     agatctccga atccctacag gacaggcggt caccgcgtcc tacgctgagg tgaagcatgc      4260
     cgctagaaga aggagcatgg agaactggca agctcgatgg gactcttctc cgaaaggccg      4320
     gtggacgcac aggctcatcc cagacctagc gcgatgggta gagagggcgc atggccaggt      4380
     gagcttttac ctcagccagg tgcttagcgg ccacggatgc ttccgccagt acctgaagcg      4440
     cttcggccac gaggcggaag actggtgccc ggagtgcggc tctggcatag tggaggatgc      4500
     gcaccacgtt ctcttcgagt gccgcaggtt cggcctcgag agacaggaac tggaggaagc      4560
     agcgggatcc tcgattagcg ccgaaacctt ggtgccgagg atgctggaag acccaaaagt      4620
     ttgggaagcg gcagaaacat ttgccgctca cgccatgaag accctcaggg cgatggagcg      4680
     aaggcggaag gagcggccgg agtaggggcc tccgcgcccg cgaagcaatg ccaggcggcg      4740
     gtaccgcacg gcgtgagctt ctattcccac gtacctgttc cgtcttgtcc tagttgtaac      4800
     tttaagtgta ttatagttta ttagttattg taagatggaa taaaataatt ggaatacaaa      4860
     aaaaa                                                                  4865
//
ID   R1-1_DMo    repbase;    DNA;    INV; 5557 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5557
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 5557 BP; 1278 A; 1339 C; 1579 G; 1361 T; 0 other;
     ttctgacagc cgactggtgc ggacgtgttt tttcgagtgc tcgtgaaaaa gtgaaaataa        60
     aataaaataa aataaattat ataaacagtg tttaatatta attaataata gttaatttat       120
     tatatactga cttacttttg tgcgaccgcg gagcgcgggg agtgcggaaa ataaacaatt       180
     acaatattta atattgggaa aattttgtaa cattacgtgg cctttagtgg aagtgttgca       240
     attttataga tatcgataat ttgcaatcga gcatacggtc actcacacat gcaaaaagag       300
     cattttggaa aataaaaggt ttggtcacat cttttagctt ttttaaaatt tacaggactg       360
     gtcacactta atttggcggg aaatttaaac ggagaaaatg gctgctgctg gccatagcag       420
     cttcactgag acaggtggcg aaagtgatgt ttctttggtg cctgtttcta ttggcagaag       480
     gcggaagacg ttgaggaaga catctaacca tgacgacata atatatacag tccctgagtc       540
     gccgccccgc aagaagcgcc caggtaagaa ggaacaaact gatgattcgg atgcctctgt       600
     cgcccctgct gcccctgttg ccccttttga ctctgttgct cctgctgagc ttcctgagtc       660
     tgctgagcct gctgcccccg ttgccgaccc tgttgctgct gcccctgctg ttgccccttc       720
     tgcaacatca gccgtctatc ctggtattgg agaggagact gctgcagctg accattctgg       780
     aggacgtaag gaggtgagtt ccaactcgat ggtccaacaa atgttggcca tcgaaaagaa       840
     gctcaggaga gccgtcgtcg ccgatggagt gcccagcacc gttgcactga gtgtcttgga       900
     tctggcggcc aagtaccagg agttagtgct tgacatgtat ggcaggatga aggaactgga       960
     agccgtcgcg tttacccgcc cacaggtcgc tgccccccaa atgagtgctg ccctcgccac      1020
     ttcttacgcc gccgttcctg caactgcagc cgcagctccg attgctgctc ctcgggcccg      1080
     caaagttgcg gaaacgtggt cagcgatcgt gacgtccagc aacccggagg agacgtctca      1140
     gcaagttgct gagcgcgtcc gtaaggaagt tgcgcccgca ctgggtgttc gcgttcacga      1200
     ggtgcgtgag ctgaaacgtg gcggtgcgat tattcgtacg ccatctgttg gcgaaatacg      1260
     gagggttctt acaaatccaa agtttaaaga agttggcctc gatgtcaagg agaatgctgc      1320
     tattcggccc aagatcaacg tggttaacgt tgacagcagc atcacgccga agcagttcat      1380
     ggagggtctt tttaagaacc acttcctcgg acactgctcc agtgcagcgt tcgaaaagtc      1440
     ggttaagatt gcctcaaagc catggaacag cgacgatgga cccacggtca acgttcaact      1500
     ggagctggaa aggaaggcgc tggacatcct ggaggactcg gaaaggatct acgtagagtg      1560
     gttttctttc cgctggtacc cgctgacccc gacttatgct tgctttaggt gtttcagctt      1620
     tgatcacaaa atagcaacat gtcggatgaa ggaacaagtg tgtaagcgat gcggacaatc      1680
     ggggcatcgt gtctcgggct gtaggaatcc tgtgcattgc aggaactgca gtttcaaggg      1740
     tttacccgcg gggcatcata tgctctctga gacttgcccg atttacggac gtgtgctcgc      1800
     cagggtggct gctaaacatt aataatgttt agtatcatcc aggctaactg cggtcgcagc      1860
     cgagctgccg ttatcgacct tggagttcgg atgaggcact caaggacgat gttcgcattg      1920
     ctacaggagc catacgttga ccgtggagga aggatcaccg gattaccggc aggcatgcga      1980
     gtcttctccg accgacgcaa caaagctgca attatcgtag atgacccgga ggtcatctgc      2040
     atgcctgtct cctcgctcat aaccgagttt ggcgtatgcg tgagtgtgtc gggaaacttc      2100
     ggctcgattt tcctcacctc cgtatactgc caatttaaca cagaaatgga accataccta      2160
     ctatacatgg atgcggtgct gcgactagcc agccgcacgc ctgtcatcta tggccttgat      2220
     gcgaatgcag tatcccccct gtggttcagt aagctacccg agcgctctcg gggctacctg      2280
     aacaggcagc ggggtgagct gctagctgat tggattcagg gaagtcgagc cggcgtgctg      2340
     aatgttcgta gtagtgtata cacgtttgat aatcgcaggg cgcggagcga tattgacgtg      2400
     accattgcca gtgattcggc gtctacgtgg gcaacgtatg actggagtgt aagcgagtgg      2460
     gatttaagcg accacaacat catcactgtt gtggtgacgc ttgatccgga aagcacagtt      2520
     gagagctatg ctcctgtgcc ctcgtggaaa cttcagaatg ctgactggcg gcgtttctgt      2580
     gatgagttga ggactgcatc gatggaaatc cccctggaga actttcgtct tatgacatcg      2640
     gatgaacaag tggctgcact gcgctccctg gtccatcagg tgaacgacac tttgtttggg      2700
     cgtcgacaac cgcaagctag acgtcgtgtg ggctggtgga atgccgccct catggacgca      2760
     cgccgtgcgc tcaggagagc ccggcgaagg cttcaacatg cgcgtcgtac tcaaagtgat      2820
     agtgccagtg cccttgcctc gcatttcagg atcacccgaa agaaatacga gaggatgata      2880
     cttaggacga aggaggaaga ctggaaacga tttgttggcg agcatcagga tgatccatgg      2940
     ggatcagtct acaagatatg ccgaggccgc aagacgtgca ccgatatcgg ttgccttcgc      3000
     tggaacaatg agcagttcgt acctggcatg actgcgcgaa tgtcctgctc cgcaattttt      3060
     tcccagctgc ggagaggcca gtggacattg ttgttcctcg cgaagtaccc ccagccctcg      3120
     aaactttcga ggtcgagatg tgcatcgcca gagttcggag caggcgctcg cctggcttag      3180
     atggcatcac agggggtatg gtcaaagcgg cctagcgcta ttccggagca catgacagcg      3240
     ttgtactccc gctgcctggc agatggatac tttccctttg agtggaagcg cccacgtgtg      3300
     gttgcgctcc tcaaaggcct cgataaagac aggagcgatc cagcgtcata tcgaggcatc      3360
     tgcctactac ctgtctttgg taaagtactg gaagggatca tggtgaaccg cgtgaaagag      3420
     gtgctcacgg gtgagagtcg atggcaattc ggctttcgcc ccggacgctg cgtcgaggat      3480
     gcctggagac atgttgtgag tagcatcgaa gccagcccgg ctcgatacgt gctcggaatc      3540
     ttcattgact tcaaaggagc attcgaccat gtcgaatggg atgcagcgtt acgccgacta      3600
     tcggatctag gatgcaggga aattgggatc tggcgcagct tcttttcgga ccgaaatgcc      3660
     agcatcatca gcagctttgg tgaagccagt gtgaacgtct cacgtggctg cccgcagggg      3720
     tccattagtg gtccatttat atggaacatc ttgatggatg tccttctgct ccgccttgaa      3780
     gcgcgctgca catttagtgc atatgctgat gacttgctgc tgctcgtcga ggggaattcc      3840
     agatcccaac tggagctcac aggcgcccaa ctaatggaga tagttggagg atggggtatt      3900
     gaggtgggcg tctcagtttc gataacgaag actgtgacga tgctccttaa gggaaggctg      3960
     tcagctggca ggaatcccgc cgttagattt gcaggagcaa atctgcggta tgtgacgcaa      4020
     taccgttatc ttggcatcac agttggcgag cggttgagtt ttctcccgca tatcgcgtct      4080
     ttacgcgatc ggctggctgg agtcgtcgga gccctgaccc gtgtgctacg cgttgactgg      4140
     ggactcagtc cgcgcgcacg gcgaaggata tatgccggac tcatggtgcc ttgtgcatta      4200
     tttggtgcct cgatatggta caagacggcg atgagactag tcggcgccag gaggtcgctc      4260
     aagtcctgcc atcgcatcat cctgttagga tgtttgccta cgtgccgaac ggtatccact      4320
     gatgcccttg aagtactagc tggagcccca ccgctggacc ttgttgcgac gcgcaacgct      4380
     atgcagttta agctgaagag gaactacccg atgatagggg gcgattggct ctacggtcaa      4440
     gacgtttcga cccttgatcg tactatgagg agagccttgc tggacgaacg cttgttgcgt      4500
     gaatggcaga tccggtggga tgacagcgaa cacggccgtg ttacgcataa attcatcccg      4560
     gatgttagct tcgtttatag ccgtcccgac ttcagtttca cgatgctgac cagtttcctc      4620
     ataactggtc atggctcgtt gaacgctttt ctgcatgcgc gtggtctaag cgagactgct      4680
     ggatgcctat gtggccatcc cctagaggac tggctacacg ttttgtgtgc ctgccccctc      4740
     tatgcggatg tgcgggatct gcaaggactt aggatccagc agtctggaac cggtgactgg      4800
     attgtggcgg agactttgac gaatcaggat agtatggaac ttctggattg ctacgctcgc      4860
     acagttttca ctaggcgacg cacgctgcta gatgctggag gacctggacc tggccgacca      4920
     gtgccggact gacgttagtc aaaactggta gtagacttgt ctacaaaggt ctgaccaaag      4980
     tccgtaagtt tgggagacga atccatttgg aggagtcgaa gggccgacca gagccttaat      5040
     ctggtaggtt atctcttcgg aggtgccgcc ggtgttaacc cagttccagg ttttcggaaa      5100
     ccaaaatggg cagtagtcgc ggactacgtt cagccgatca aagctgcaaa ttgtaacaga      5160
     tttgaaattt gaaccacggg atgggctggt gtccaaggcc agtccaattg aggttggccc      5220
     cctttagtgg gagtatcgtg gtggctgtgg tgtttattta gctgtgtctt cacaaaagtc      5280
     ggagcacagc tgttgggtcc aatgtgtatt tggatcacaa ccggatgctg tacccgtagt      5340
     cagcagaggt tatgataggc ctcgcctcga cccaagaggg aattgtgtcc gacaacacaa      5400
     ttcgagttgg tagctaaaag agttctttta ggggcgttgg tggacgcatt tttttcaccc      5460
     gctgtactat gtgtcactta tgtggcacat gagagtaccg tggtagtaaa ctcccattgg      5520
     agtacacgcc acgtaaaaca aatcaaggat tctgtcc                               5557
//
ID   R1-1_DPer   repbase;    DNA;    INV; 5020 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5020
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1666-1666 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. This family is inserted into (CA)n
CC   microsatellites, like Waldo elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           476..1855
FT                 /product="R1-1_DPer_1p"
FT                 /translation="MSDQREQAAACSTPLTSSFAWDEENPFRRRNALARSP
FT                 NQPAEAVEERARSSPPTLQRPQEEQADPKERAMAHLASLGQKARELRKLMV
FT                 LPKRSITNPMRDLVDEIEYLQRELESCWQAISAEQAVAKVAQPAVTERAGK
FT                 RARPEPRNTTHPSPSPSPRPKKPKHGPKKSKKTEKKPQEGQMRDAVARKGP
FT                 EDAPKEREVGWVKVVARQRPKPKQQQRPRPPRSDAIVIAATGTVSYADILR
FT                 KVKTEPSLKKLGQSVQGVRRTAKGELLLMLEKSADPRTQEMQAAVKEALGS
FT                 TVEVRSLTETVILEVRDIDEVSTQEEVLAELKAQAGVEICEAAAISIRPAY
FT                 RSTQTLTLKVPPAIAKPLLEKGRIRLGWGYCRIRPKSTPRRCYKCMEFGHI
FT                 APNCKSSQDFTKCCYNCAGADHQAKDCKDEPSCILCKRHRVKDPKHQTTSS
FT                 RCPQYQKAMQQMKDR"
FT   CDS           1855..4815
FT                 /product="R1-1_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKIIQLNLNHCEMAQQLLDQTIREHRIDVAVISEQYR
FT                 NRNSGEWIADSSKKAAIWSCASPTQQLLQTYVGDGFARARINGVHIYSCYL
FT                 PPSLSLQQATQALERIAEDAREKHPTLIAGDFNAWATEWGCPRTNPRGQAL
FT                 LECFATLDAVLLNTGTQQTFGRAGTGSIIDLTFVSSSLSRRTTWEVSGLYT
FT                 GSDHQALICEIQEAGAPNPFIGKRIGYKTETLEPDMVRAMFEDYETNGTAE
FT                 ERASQLAIHTLEACDASMLRKRRSLNNRRPAYWWNAAIGSARQECQRKRRL
FT                 YQRSRGSPEFERLQGEYKESRRCLKRQIKDAKRKCFEKLCDDADANPWGYA
FT                 YRLVMKRLRVFSPPPPMCADLLVNIVETLFPEKVAAQRVMDRIPPPEIEAT
FT                 TGAEVLEALQRIKNGKAPGPDGVPNAVLRTAIETNPQMYVDLFNACMSEGT
FT                 FPRPWKRQRLVLLPKGNKPTEEPSSYRPLCMLDTVGKILERIIHTRLEKAV
FT                 TRQLSPRQHGFRKGRSTVDAIGEVCEIAKRAIDGTRWMYGTKEYCIVATLD
FT                 VQNAFNSANWDHILEELRNFQVPPYLQNIIADYLRDRXLIYETDKGTREHQ
FT                 ITGGVPQGSVLGPLLWNIMYDGILKMDMPMGATVIGFADDIAIVVVAKQKE
FT                 AAEEICNDAVERARTWLSGRDLALATHKTEAVLISSRKVVETATIRVGDCT
FT                 ISSSPSLKYLGVMIDHRLSFKHHMAYASSKAGKTAVALSRIMANTGGPKQP
FT                 RRKLLASVVGSTLMYAAPIWVDAMKHKTYARECNAVQRLCALRVCCAFRTV
FT                 SQDAALVVAGMIPIHLLAREAAGIRAQRTLGTTDQDTRGALRQRTILQWQD
FT                 SWDNSSKGRWTHRLIPDLKSWLNRSHGQVEYHLTQLLTGHGCFKAYLHRFK
FT                 HEDDPFCVVCAGVIEDAEHCFFECPRFRQEREDLSNKLGRMPAVTNLAECL
FT                 LESEGNWAAIRFMAVTMATKLRREERARNARR"
XX
SQ   Sequence 5020 BP; 1454 A; 1260 C; 1470 G; 833 T; 3 other;
     gtctgtgtat tctagtgagt gcggtcgtgt ttttaaatcg ttccgtataa ttcagtggaa        60
     aacgtcggaa gttagcctgg aaaagaggca aagagtagtt agcgcgagcc atagtagtgc       120
     tgcgttactt acctgcgcgg aacgcaagtc cgcaagcaga gaagcggcca cctggccaat       180
     agtactggcc gaaatcccag tgggacgccg tcgagccata ggccgaaggg gggggaagga       240
     ggagcaggta agtgcctgtt ttcctattct tcttcgctgt gattcttggc gccacttgtt       300
     ggttgctgcc ttctttttgt ttttgggcaa aattggccaa gcacaccgca agtggtgttg       360
     gataacgacg gaagaacagc tgactggagg ctaagtgctg gaaaacgaca gcgtctggcc       420
     aatagagggc gcggccacag caaccggagt tgccagatca acggccagat cggagatgag       480
     cgatcagcgg gaacaagctg cggcttgcag cactccgctg acaagctcat tcgcctggga       540
     tgaggagaat ccctttcgcc ggagaaatgc tctggcgcga tcgccaaacc agccggcgga       600
     agcagtggag gagcgcgcaa gatcctctcc tccaacgctg cagcgccccc aagaggagca       660
     agcagacccg aaggagaggg ccatggcgca tttggcgagc ttgggccaaa aggccagaga       720
     gttgaggaag ctgatggtgc tcccaaagag gtccatcacg aacccaatga gggatctggt       780
     ggatgagatc gaatatctgc agcgagagtt ggaatcgtgc tggcaggcga tctctgcgga       840
     gcaggctgta gccaaggttg cacagccggc agtgacggag agggcgggaa agagggcacg       900
     gccagagccc aggaacacca cccacccgtc cccgtccccg tccccaagac cgaagaagcc       960
     aaaacatgga cccaagaagt caaaaaaaac ggagaagaag ccgcaggaag gccaaatgag      1020
     ggacgccgta gctcgcaagg gaccggagga cgccccaaag gagcgagagg tggggtgggt      1080
     gaaggtcgta gccaggcaaa ggccaaagcc aaagcagcag caacgaccaa gaccgccacg      1140
     cagcgatgca atagtcatcg ccgccaccgg cactgtctca tatgcagaca tcctaaggaa      1200
     ggtcaagaca gagccaagtc ttaaaaagct agggcaatcg gtgcaagggg tgcgacgcac      1260
     agcaaaagga gagctgttgc tgatgctgga aaaatcggcg gacccgagaa cccaagagat      1320
     gcaggcagca gtcaaggaag cgctaggaag cacggttgaa gtaaggagtc ttaccgaaac      1380
     tgtcatcttg gaggtaaggg acatagacga agtgtccacc caagaggaag tcctagcgga      1440
     actcaaagcg caggcagggg tggaaatatg cgaggccgca gccatctcca tcagaccagc      1500
     ctataggagc acgcagaccc tgaccctgaa agttccaccg gctatagcaa agcccctcct      1560
     ggagaaagga agaattcgcc tggggtgggg gtattgcaga atacgaccca agtcaactcc      1620
     ccgaagatgc tacaagtgca tggagtttgg ccacatcgcg cctaattgta agagcagcca      1680
     agacttcacg aagtgctgct acaattgcgc aggagccgac caccaggcca aagattgcaa      1740
     agacgaacca agttgcattc tttgcaagcg ccaccgggtg aaggacccga agcaccaaac      1800
     gacgagttcg aggtgcccgc agtaccaaaa ggcgatgcag caaatgaagg atagatgaaa      1860
     atcatccaac taaacctcaa ccactgcgag atggcacagc agctgctgga ccagaccata      1920
     agggagcacc gtattgatgt agcagtcata agcgagcaat accggaatcg caactcggga      1980
     gagtggattg ctgactcgag caagaaggca gcgatatgga gctgtgcgag tcccacacag      2040
     caactactgc aaacatacgt cggagacgga ttcgccagag cccggataaa tggagtgcac      2100
     atatatagct gctacctgcc cccgagcctc agcctacagc aggcgacgca ggcactggaa      2160
     aggattgctg aagacgcgcg ggagaaacac cctacgctca tagccggcga tttcaacgct      2220
     tgggcgacgg agtggggatg cccgagaacg aacccaaggg gacaggcact cctagaatgc      2280
     tttgcgacgt tggatgccgt actgctgaac acaggcacac agcagacgtt cggcagagct      2340
     ggaacggggt ctataataga ccttacgttc gtgagcagca gcctcagccg caggacaacg      2400
     tgggaagtta gtggcttata caccgggagt gaccaccaag ccctcatatg tgaaatccag      2460
     gaagcgggcg cacctaaccc gttcattggc aagcggatcg gttataagac cgaaacgcta      2520
     gagccggata tggtccgggc catgtttgag gactacgaga ccaacggtac ggctgaagag      2580
     agagcaagcc aactggctat acatacgctg gaagcatgtg atgcctccat gctaaggaaa      2640
     agaagaagcc tgaacaaccg caggccagck tattggtgga acgctgcaat aggtagcgcc      2700
     aggcaggagt gccagcggaa aagacgacta taccagcgtt cgagaggttc cccggaattc      2760
     gagaggctcc aaggagaata taaggaaagc agacgctgct tgaagaggca gatcaaagat      2820
     gccaagcgca aatgcttcga aaagctctgc gatgacgcag atgcgaaccc ttggggctac      2880
     gcatacaggc tggtaatgaa gagactgcga gtgttcagtc ccccgccgcc aatgtgtgca      2940
     gatctgctgg ttaacatagt agaaacccta ttcccagaga aagtggcagc ccagagggtg      3000
     atggatagaa taccgccacc tgaaatagaa gccaccacgg gagcagaagt cctcgaagct      3060
     ctacaacgga taaagaacgg caaagcacca ggacctgatg gggtcccaaa tgccgttctc      3120
     cgcacggcta ttgagaccaa tccacaaatg tacgtggatt tattcaatgc gtgcatgtcc      3180
     gaagggacct tccccagacc atggaagcga cagcggctag tcctcttacc caaggggaac      3240
     aagccgaccg aggagccatc atcctataga ccactctgca tgctcgacac agtgggtaag      3300
     atcctcgagc gcataatcca caccaggctg gagaaggcag taacgcgtca gctctcaccg      3360
     agacagcacg ggtttcgcaa aggcaggtcc acggtggacg caatcggcga ggtatgtgag      3420
     atagcaaagc gagctatcga tggcacccga tggatgtacg ggaccaaaga gtattgcata      3480
     gtggcaacac tcgatgtcca aaatgcattc aactctgcca attgggatca catactagaa      3540
     gaactgagaa actttcaagt accgccgtat ctgcagaata tcatcgcgga ctacctaaga      3600
     gaccgaktgc tcatatatga gacggataag gggacacgtg agcaccaaat cactggagga      3660
     gttccccaag gatcggtcct cggcccgctg ctgtggaaca tcatgtatga tggaatcctc      3720
     aagatggata tgccaatggg cgcaacggtg ataggctttg ccgacgacat agcaatagtc      3780
     gtagtggcaa aacagaaaga agcggcggaa gaaatctgca acgacgcggt agagagagcc      3840
     agaacatggc tatcagggag ggatctcgca ttagccaccc acaaaacgga ggcggtgctc      3900
     ataagcagca ggaaagtagt ggagacggcc acgatccgag taggagactg cactattagc      3960
     tccagtccaa gcctgaagta cctgggggtc atgattgacc acagactcag cttcaagcat      4020
     cacatggcgt atgcaagcag caaagcagga aagacggcag tggccctatc ccgcatcatg      4080
     gccaacaccg gaggcccgaa acagccaagg cgaaagctac tagcgagcgt agttggctca      4140
     acgctaatgt acgckgcacc aatatgggtt gatgcaatga agcataaaac atatgcccga      4200
     gaatgcaacg cagtccagag gctgtgtgcc ctgagggtgt gttgcgcatt cagaacggta      4260
     tcccaagacg ccgcacttgt ggtagcagga atgattccca tccatctgct ggcaagagaa      4320
     gccgcaggaa tcagggcaca gcgaaccctg gggactacgg accaggacac cagaggtgcc      4380
     ttaaggcagc gcacaatcct gcaatggcaa gattcgtggg ataacagcag caaagggcga      4440
     tggacccata ggctaatccc agacctgaag agttggctga accgtagcca tggacaagtg      4500
     gagtatcacc tgacacaact gctgacagga cacggttgct ttaaagccta cctgcatagg      4560
     tttaagcacg aggacgaccc cttctgcgtg gtctgcgcag gggtcatcga agacgcagag      4620
     cactgcttct tcgaatgtcc aagatttcgg caagaacgag aggatctaag caacaagctt      4680
     ggaagaatgc cagcggtgac aaacctggca gaatgcctgc tggagtcgga aggaaactgg      4740
     gccgcgatta gattcatggc cgtaactatg gctaccaaac tgcgtcgcga agaaagagca      4800
     cgcaatgcaa ggagataaag gataaaggag attgttaaga gaagagccct acgggcatct      4860
     ccccccggcg aagtaatatc tcgcgacagt accgccggga tccgggatag gtgtggttgg      4920
     ttttagagcg gttagagtcc ctcacttcgg cttcggctga gtcggcatga agctttcctg      4980
     tagtcacaca acaacaaaaa aaaaaaaaaa aaaaaaaaaa                            5020
//
ID   R1-1_DRh    repbase;    DNA;    INV; 5004 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.08, Created)
DT   03-JAN-2012 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-5004
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1691-1691 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           703..1938
FT                 /product="R1-1_DRh_1p"
FT                 /translation="MDQANPFAKSTAMTRSPTLQAQHKVEQQPKQAEAITS
FT                 LEDVIAKIGLAVNGLSLLFKDHRVVKQPMRDLLTELVELHKTAVASIKQEE
FT                 ATGKECRESATQTTPRAEQRDNKLCGKERIVATPKRAREPAAGQKCTPPMK
FT                 RVHRERLQEKRHEDFQQVADRNPKGNSKRQLRARPDAIVVARVGEITYAEL
FT                 LKAVKGDSTLKHVSGDVQTIRKTAKGDLLLQLKKSPDHSAEEVKKAVGNAL
FT                 GVKAVVRALTEQTRLEVMDLDEVTTKEEIVEALNSKLGDTPLSEEAVKSLR
FT                 ATRNGLQIATLXLPTPTANKLVNLGKIRIGWVICRIKPIFSPKRCYKCLAF
FT                 GHISSNCTEKTDLRGACFKCGGKDHEARSCNRDPHCLLCAQKRDLPTNHAS
FT                 GSFKCPAYVEAVKSQQRC"
FT   CDS           1896..4892
FT                 /product="R1-1_DRh_2p"
FT                 /translation="MPSVCRGGKISTKMLRVMQLNLNHCRVAQDLLTQTIS
FT                 ELKIDLAILSEPYKAIRSNTWVTDQLGKAAIWTCGQPAQHLACVKASKGYV
FT                 RAKLKDLWVFSCYFPPSWTLEEFSETIDSLAXDIRAHSPAIIAGDFNAWST
FT                 EWESASTNARGRVVTETFASLDVVLQNTGSTPTFRRAGAQSIIDLTYVSAS
FT                 LAATATWEISETYTASDHSAIISTIRTRRTATPTITRGHYKENTLDIPAFR
FT                 AALEGMELADNERALMEKVKEACDASMQRSKSFKGRKPVYWWNQAIEEARR
FT                 ECISARRAYHRARGTEAFHILREVFTQKRKILKRKIKSSKKLCFLQLCDEA
FT                 ENDLWGKAYKVVMKKTNAVKNVTPTGSEKLGEIIRHLFPAQETRQAEAFGV
FT                 PDHQIPPVTLQELVNIAQKVPNNKAPGPDGIPNRALKLAISMYPSTFASAY
FT                 TKCLAQACFPERWKQQKLVLIPKPGKDKDEPSAYRPICLLDTAGKILESIV
FT                 SARLGEAIEAAGGLSESQYGFRKARSTLDALEAVDRIARQAIEGKRWLGGN
FT                 KQYCLVATLDIKNAFNSASWSRIMASLGMLNIPKYLQAIVSDYLSDRWLHY
FT                 DTDEGPQRYEITGGVPQGSVLGPLLWNTMYDGILRLNFQQGVNVVGFADDV
FT                 AVIVVKKSIAEVESSTNAAISRISEWLQIVGLELAEQKTEAVLISSRKKVE
FT                 TARITVGGAQVETKRAIKYLGVMLDTRLSYREHLQATHKRAHGVTMAVSRM
FT                 MLNHRGPKSTSRKLLFNVAKSSIMYAAPIWAEATTKKSYTKGIESDYRIGA
FT                 LRVASAFRTVATEAILVISGITPVELAVVEAKENFEARKVADTQADHRLAK
FT                 LRSRTKSLENWQQRWDRAETGRWTHRLIPNIAAWVNRPHGELTFHLTQVLS
FT                 GHGCFKEYLHRFGHETSPICDTCGTVENAEHALTTCVRFGEERLRAEQILG
FT                 TPITVEGLVPSMLESQDNWTAVCSLAAEVTTELRRLERIRNERP"
XX
SQ   Sequence 5004 BP; 1530 A; 1240 C; 1360 G; 870 T; 4 other;
     agtagtcagt gagtgtagac gtgttttcaa ttacctcctg agtttttcca attagaaagc        60
     cttaaacagc cctgaaaagg taaacaaagt gaacagcgtg atccccatag gaggcggtac       120
     gtaccagggt gggtctgtgc gttgagtaca ccatatttta gcgattagat cagttaaaac       180
     tggtgctcca ccgagggtag aggggagagg ggtcaccaag actctgtttt ctcccgctct       240
     cttcccactg ggaaaacaaa aacaaagttt tcccgcgggc gatttgcgcg tttccctttt       300
     tggcaactgg acaaacagct gatcactccg atagtgctgg aaagcgctca aaccacagcc       360
     agaatcggaa acagaaacca gccgctacta tcggctagaa aaaattgcat aattctaggc       420
     cgagctcaac cagtagaaga tattcaactc gtagcagtca gcttctgaaa gggtcgaagc       480
     gtagagttca aaagcgaagg ccgaacttct tcactagtct agatagggga attaggggca       540
     gcaagtcaag gatccgacaa attccaaccc ccccgcttag gcggtgcctc agcaaacggg       600
     gctctgggga ccgaaaaggg gcggtataac ccccatcgtt agaaagtcta ggagaaatct       660
     gagaccagcg agggaacccc tgtcgcggac gttgaaagac caatggacca ggcaaacccc       720
     ttcgcaaaaa gcacagcgat gaccagatcg ccaacgctgc aggctcagca taaggttgaa       780
     cagcagccaa aacaagcgga ggcaatcacg tccctggagg acgttattgc gaaaataggc       840
     ctcgccgtga atggcctctc ccttctgttt aaggaccaca gggtcgtcaa acagccgatg       900
     cgcgatctcc taacagagct ggtagagctg cataaaacgg cagtggcctc catcaagcag       960
     gaggaagcca caggaaagga gtgcagggaa agtgccacgc aaaccacacc gagagccgaa      1020
     cagcgtgaca acaagctgtg tggcaaagaa aggatagtag cgacaccgaa aagggcaagg      1080
     gagccagcag caggccaaaa atgtacgcca ccaatgaaga gggtacatcg ggaacggcta      1140
     caagagaagc gacacgaaga tttccagcaa gtagctgaca gaaaccctaa gggaaattca      1200
     aaaaggcagc tcagggccag accagacgcc atcgtggttg caagagtcgg ggagattacc      1260
     tacgcggaac ttctcaaggc cgttaaagga gactccacgc taaaacacgt cagtggggac      1320
     gtacagacca tccgaaagac ggccaaggga gatcttctgc tgcaactgaa gaagtctcca      1380
     gaccacagcg cggaggaggt taaaaaggct gtcggaaacg ctctcggggt taaagcagtt      1440
     gtaagggccc tgaccgagca aaccagactt gaggtcatgg acttagatga agtcacaacc      1500
     aaggaggaga tagtggaggc tctaaatagt aagctaggcg atacccctct ttctgaggag      1560
     gccgtaaagt cgctgagagc caccagaaac ggcctgcaga tagccacact antgttgcca      1620
     acacccacag cgaacaagtt ggtaaacctg gggaaaataa ggattggatg ggtgatctgc      1680
     cggattaaac ccattttttc gccaaaacgc tgctataagt gtctcgcgtt cggccatatc      1740
     tcgtcgaact gcacggaaaa aacggacctg cgcggagcat gtttcaagtg tggtggaaaa      1800
     gaccacgagg ccagaagctg caatagggac ccacattgcc tactctgcgc gcagaaaaga      1860
     gatctcccaa cgaaccacgc gtctgggagc tttaaatgcc cagcgtatgt cgaggcggta      1920
     aaatctcaac aaagatgcta agggtcatgc agctaaacct taaccactgc agggtggccc      1980
     aggaccttct cacccaaaca atttccgagc tcaaaataga cctggcaatt ctgagcgaac      2040
     cctacaaagc aattagatcc aacacgtggg tcacggatca attgggaaaa gcagcaatct      2100
     ggacatgtgg gcaaccggcc caacatctag catgcgtgaa agcatcaaaa ggctacgtaa      2160
     gggcgaagct aaaagacctt tgggttttta gctgctactt tccacccagc tggacactag      2220
     aggagtttag cgagacgata gacagcctgg caancgacat aagagcacac tcgcctgcga      2280
     ttattgctgg ggacttcaat gcgtggtcaa cggagtggga gtcagcctca acaaacgcca      2340
     gaggaagagt ggtcactgag acgttcgcat cgctggacgt ngtcctacaa aacacgggtt      2400
     ccacccctac atttaggaga gcgggagcgc agtccataat cgacctcacc tacgtaagcg      2460
     caagcttggc ggcgacggcg acctgggaaa ttagcgagac ctacacggcg agcgaccata      2520
     gtgcaattat aagcaccatc cgcacgagaa gaaccgccac accgacaatt actcgaggac      2580
     actacaaaga aaatacgctc gacataccag catttagagc ggccctggaa gggatggaat      2640
     tagcggacaa cgaacgggca ttgatggaaa aggtcaagga agcctgcgac gccagcatgc      2700
     agcgcagtaa aagcttcaag gggcgcaagc cagtctactg gtggaaccaa gcgattgagg      2760
     aggcacgccg tgaatgcata agcgctagga gagcctacca tagggcccgc ggaaccgaag      2820
     ccttccatat actcagggaa gttttcaccc aaaagaggaa gatcctaaag cggaaaataa      2880
     aaagcagcaa aaagctgtgc ttcctgcaac tctgcgatga agcagaaaac gacttgtggg      2940
     gaaaggccta caaggtggtn atgaaaaaaa ccaacgccgt taaaaacgtg accccaacag      3000
     gctccgagaa actgggagag ataataaggc accttttccc agcgcaggaa acgaggcaag      3060
     cggaagcgtt cggtgtcccg gaccaccaga taccgccggt gaccctacag gagctggtca      3120
     acatagccca gaaggtacca aacaacaagg caccagggcc agatgggatc ccaaatcggg      3180
     cactcaaact ggccatcagc atgtacccga gcacctttgc cagtgcatac actaagtgcc      3240
     tggcccaagc ctgcttccca gaacggtgga aacagcaaaa gctggtgctt ataccaaagc      3300
     caggaaaaga caaggatgaa ccgtcggcat ataggcccat ttgccttcta gacacggccg      3360
     gcaaaatact ggaaagtatt gtcagtgcaa gactcggaga ggcaatagag gctgccggag      3420
     ggctctcaga aagtcagtat ggctttagaa aggctcgctc aaccctagat gcactggaag      3480
     ccgtggaccg catagccagg caggccatag aaggcaaaag gtggctggga ggaaacaaac      3540
     aatactgttt ggtggcaact ctggacatca aaaacgcctt caactcggca tcctggagca      3600
     gaataatggc ctcactcggg atgctgaaca tcccaaagta cctgcaggcg attgttagcg      3660
     actacctgag cgacaggtgg ctccactacg acacggacga aggacctcaa cgctacgaaa      3720
     tcacaggagg agtgccacaa gggtccgtcc taggcccatt attgtggaac accatgtacg      3780
     atggtatcct gcgactaaac ttccagcagg gcgtaaacgt tgttggcttc gcggacgacg      3840
     tcgcggtcat agtggtaaaa aagtccatag ccgaggtaga aagctctaca aacgcagcaa      3900
     tcagcaggat aagtgagtgg ctacaaatcg tgggacttga actggctgag cagaaaaccg      3960
     aggcggtact catcagcagc aggaaaaaag tggaaacggc acgaatcact gtgggcggag      4020
     cccaagtgga gacgaaaagg gctataaaat acctaggggt catgctggac accaggctgt      4080
     cctacaggga gcacctgcag gcgactcata agagggcaca cggagttacg atggcagtgt      4140
     cccgaatgat gcttaaccat agaggcccaa aatccacgag caggaagcta ctgtttaacg      4200
     tagcaaagtc gtccatcatg tatgcagcac caatatgggc cgaggcgaca acaaaaaaga      4260
     gctacacaaa gggtatagag tcggactaca gaataggagc tcttagggta gcctccgcct      4320
     tccgcacggt cgctacagag gccattctgg tcatcagtgg aataacacca gtcgagctcg      4380
     cagttgtgga ggccaaggag aacttcgaag cgagaaaagt agctgataca caggcggacc      4440
     accgcttggc aaaactaagg tcaagaacaa agtcccttga aaactggcag caaagatggg      4500
     atagggcaga aaccggccgg tggacgcacc gactcatccc caatatagcg gcttgggtaa      4560
     acagaccaca cggcgaacta acgttccatc tgacacaggt gctgagcgga catggatgct      4620
     ttaaggagta tttacatcgc ttcggccacg agacaagccc aatctgcgat acctgcggaa      4680
     cagtggaaaa tgccgaacac gcactaacca cttgtgtcag gttcggagaa gaacgcctaa      4740
     gagctgaaca aatcctgggg accccgatca cagtggaggg acttgtacct agtatgctgg      4800
     agagtcagga taactggaca gctgtatgca gtctggctgc ggaagtcacg acggaactga      4860
     ggcggctgga acgcataagg aacgagaggc cctaaacagg ccagccagcc ttgcgaagca      4920
     atgcttcacg gcagtcccgc aagtctggat atcatatgta tatttatttt tgtctatgta      4980
     tgtaatttat gaataaaaaa aaaa                                             5004
//
ID   R1-1_DSer   repbase;    DNA;    INV; 5868 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5868
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2048-2048 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1035..2735
FT                 /product="R1-1_DSer_1p"
FT                 /translation="MSEYNINTPGGSHKSGNPPVGKPTARARILEALPNTP
FT                 SHPVEAVADLAASVGTAPSQETVMDKGDPAAFRKSSLMARSPPLAASPAPA
FT                 RSKTGDPADSAKRGRDPASPVSGPRGTXPKRSKATVVEPPSDTEEVKERAL
FT                 TRTESACRLGKLLDELHSLVHEKQVRHINNAIRSMIDEMRNLNSCIELAAE
FT                 GPEEPREPYARESVCSKCSQAAPGGKPGVSKAQQTAAAGRKDRAVQTEPWR
FT                 RFSQPTDAGTSSEVPGRTRAPQVQATAPAATARGIRNAQRAPQAKSRATGY
FT                 GTGNAAGPTRPPDPVPANGGDSWSTVVRRKKQTRKARPDAVIVEAPGKSYN
FT                 EILALVTRREDSKLTNLGGSVSKVRRTARGNLLLEVARGSNESAESMRVSI
FT                 SQVLGDAAEVRALTEESKVCVFEIRNLDAITTESEIRTAFSDQYQLSEGAV
FT                 RIRSLRPGYGETKTAVLSLPSSMASEVRRRGEVRIGWTRCRVREREGPPRC
FT                 FRCLELGHIAIRCKSLVDKSGCCIKCGEAGHKAATCSSGRGVGPGESNHQP
FT                 DKKRTPGTNGGLVRSRPECS"
FT   CDS           2729..5725
FT                 /product="R1-1_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRAAQDLLTQTVREVGADVAIISEPYR
FT                 VREGGVWAKDRSGKAALWLCGDGLRQMSNILAADGFVRAEVGGYHIYSCYL
FT                 APSLPLEAYSRILEDLSSDLCGRANVIVGGDFNAWAQEWGSVLTNARGRVV
FT                 LEALAATDVVLLNNGGRHTFVRAGAASVIDLTFVSRAISHYAKWEVSDVYT
FT                 GSDHEAILCSVGVPVVGTRSALRPEKAYRPDTLCIRTFTNVLDGMVTGEPR
FT                 GAEGMANHVAAALEHACDQSMRLRGSFRGSRRPVFWWSDEIADLRSTCHRA
FT                 RRQLTRARGSPRALECSEAFKIARKALKVAIRGAKRDRFLQLCDEAEEDPW
FT                 GGAYRMVVKSLRAGSTAPSDPEELDVIVRALFPSGAPVTVEPSADRHPDVD
FT                 CEVSEEEVIRLGRSVHHKKAPGPDAIPNRALKIAIALHPREFAALYSKCLE
FT                 EGIFPERWKRQKLLLLSKPGKPPGEPSSYRPICLTDTAGKVFEKIVAARLT
FT                 AAIEESGGLSPSQFGFRKGRSTLDAIELVKDIAGSAIAGTRWKGGSKSYCL
FT                 VVTLDIRNAFNTADWNRTLESLVALNIPGYLLKVVRSYFSERVLVVASAMG
FT                 SRAYEVSAGVPQGSVLGPLLWNTMYDGVLRLPMPSGTTVVGFADDVAVVVT
FT                 AKERTAAEDLANEAIGTIEAWLTSAGLELAAHKTEAVLISSRKAVETAEIR
FT                 VGGTAIRSQRAIKYLGVLIDTRLSFREHLEYAQKKASGTAGSLARILLNTR
FT                 GPKQITRKLLTSVVTSQILYAAPVWAKAAATKSYMRGVEATYRLCAVRVAS
FT                 AFRTVSDDAVLVIAGMVPLRELVREKAEVRCALRSHEGPGGGAKAEAKSAA
FT                 RGRSYESWQAKWDASSKGRWTHRLIPNLVAWMERKHGQVDFYLTQVLSGHG
FT                 CFRSYLKRFGHDDEDGCPECGSGVAEDVYHIVFECRRFDEERAALEEVAGA
FT                 EIRVDTLVPMMLEXPRLWEATAAFSAKVLKALRVLERGRRERTG"
XX
SQ   Sequence 5868 BP; 1297 A; 1602 C; 1950 G; 1014 T; 5 other;
     gtgtgacgtg gtcgcgagtg cggttgcact gcggtggtgc tcccgcaatt tgtgtttggt        60
     gcgcgggttg cggcagtgta ccctgcgcaa cggggcgccg gcaggctgcg tgaagctggc       120
     ggcggtactc acgtgcagag ccgggtccca ggcgtccgcg gaggatccgg aaaaatccaa       180
     acctcggatt ccaatgattc gagtcgacgg agagagtggt gagagcattt cccccgatgt       240
     tttttgttgt tgcctctgtt gctttcgcga gttgccttct cccgaggtaa acgtggctgc       300
     ccccgcagtt ttttcgctag tcacgtcagc tgttggcgag atcagctggg tctagtgttg       360
     tggggtgcca gagacctacc cggtctggca gcccccccct gcctttggtg gcgtcgggct       420
     actcgagcga caggtggcgc tgtcaagccc tttctcacgc tgtagaaagc tccttgttgc       480
     gacacccacg tctgctctgc atatgctgga ggtagcatat atttttgggc tgcggccctt       540
     gatccttggc aaggggtaag gggaagtggg tgaaacctaa gtcctaagct gcactgggag       600
     gcctgagtgt ggtaaaggtc aaggatctga ccaaccgcca tccccaccgc tacgcggctc       660
     accattccta acggggctct ggcgaccgag caggagcggt ataactccca cctgttcagt       720
     cacggggaaa ctcctggcca acgtgggacc ccgaaagtgc actggccgtt tcgtctgtcc       780
     ttcccaaacc ccctcgcagc gtcggtccca aagtgggcgg ctgcgtgaaa ccgtgtcggt       840
     gccatagtgg ccggcggtgg taaatgcctg gcagcaggcg ttagctgcac ataaattcca       900
     aacccaggta gcgtctgacc cacagtgggc gactacctgg tctgcgtctg tgccatagtg       960
     gccggcagcc aaagaacctg gcagaaggta taaaatgcag ccttgcattg ggcgacaatg      1020
     caccctttac tggaatgtcg gaatacaaca taaatactcc aggtggcagc cacaaaagtg      1080
     gaaatccacc cgtggggaaa cccacggcta gggcaaggat tctggaggcc ctacccaaca      1140
     ctccatcaca ccccgtcgag gcggtggctg acttggccgc ctcggtaggt actgcaccaa      1200
     gccaggagac ggtaatggac aagggggatc ctgctgcatt caggaagagc agcttgatgg      1260
     cccgatcccc acccctcgcg gcgtccccgg cgccggcgag gagtaaaacc ggcgatcccg      1320
     ctgactcggc caagagaggc agggacccgg ccagccctgt gagcggtccc aggggcacgc      1380
     ktcccaaaag gagcaaagct accgtcgtcg agcccccatc cgacaccgag gaggtcaagg      1440
     agcgggcgct tacgcgcacg gagagcgctt gcaggctcgg aaagctgctg gacgagcttc      1500
     acagccttgt ccacgagaag caggttcgcc acatcaacaa cgccataagg tcgatgattg      1560
     acgagatgcg gaacctgaac tcttgcatag agctggcggc cgaaggacct gaggagccca      1620
     gggagccgta cgctcgggag agcgtctgct ccaagtgctc tcaggcagca cctggcggca      1680
     agcctggcgt aagcaaggcc cagcaaacgg ctgccgcagg gaggaaggac cgggcagtcc      1740
     aaacggagcc gtggcgaagg ttcagccagc caacagacgc ggggacgagt agcgaagtcc      1800
     cagggcggac gcgagcccca caagtccagg ctacagcccc tgcagcgacg gcgaggggta      1860
     tccggaatgc ccaacgagct ccccaagcaa agtctcgggc aacagggtac gggacaggga      1920
     acgcagcagg accaacaaga cctccagatc ccgtgccagc gaacggcggg gactcgtgga      1980
     gcaccgtggt caggaggaag aagcaaaccc gcaaagctcg ccccgacgcg gtgatagtag      2040
     aggcaccagg aaaaagttac aacgagatcc tggcgctggt caccagaagg gaggacagca      2100
     agctgaccaa cctcggaggg tcagtcagca aggtgcgtag gacggccagg ggcaacttgc      2160
     tcctggaggt agccagaggg agcaacgaga gtgccgagtc catgagggtc agcatctctc      2220
     aggtcctcgg cgacgcggct gaagtgcgag cgctgacgga ggagtcgaag gtctgcgtct      2280
     tcgagattcg taacctcgac gcgatcacga cagagagcga gatccgtaca gccttctcag      2340
     accaatacca gctgagtgaa ggtgcagtga ggatccgaag cctccgcccc gggtatgggg      2400
     aaacaaaaac ggcggtcctc agcctgccta gctctatggc gtcggaggtt aggcggcgag      2460
     gcgaggtccg cataggatgg acccggtgta gagtccgtga acgcgagggc cccccgcgct      2520
     gctttagatg cctggaactc gggcacatcg ccatcaggtg taagagcctg gtggacaaaa      2580
     gcggttgctg catcaagtgt ggcgaagcag gccacaaggc tgctacctgc agttccggca      2640
     gaggagtcgg ccctggagag tcgaaccacc agccggacaa aaaaaggact ccgggcacaa      2700
     atggcgggct cgtccgctca agacccgaat gcagctgatc caactcaacc tgaatcactg      2760
     cagggctgcg caggacctgc tgacgcagac ggtgcgcgag gtaggggcgg atgtagccat      2820
     aatcagcgag ccctacaggg ttagagaggg aggagtgtgg gccaaggacc gctctggcaa      2880
     ggcggccctg tggctctgtg gcgacggcct gcggcaaatg tccaacatcc tggcagcaga      2940
     tggattcgtg agggcggaag ttggcggcta ccatatctat agctgctatc tggcgcctag      3000
     cctcccgctg gaggcgtaca gcaggatcct tgaggacctc agcagcgacc tatgtggaag      3060
     ggccaacgtc atagtcggag gcgacttcaa cgcttgggcc caggagtggg gatcggtcct      3120
     gaccaacgcc agaggacgcg tggtgctgga ggctttggcc gcgacagacg tcgtcctcct      3180
     aaataacggg gggcggcaca cgtttgtcag agcgggagcc gcctctgtca tcgacctcac      3240
     atttgtgagc agagcaatct cccactatgc caaatgggag gttagcgatg tctacaccgg      3300
     gagcgaccac gaggcgatcc tgtgctccgt cggagtgcct gttgtaggta cccgttcggc      3360
     tctgcggccc gaaaaagctt accggccgga cacgctgtgc atccggacgt ttactaatgt      3420
     gttggatggc atggtaacag gggagccgcg tggagctgaa gggatggcaa accatgtggc      3480
     agcagcgctg gagcatgcat gcgaccagag catgcggctg agagggtcgt ttcgaggaag      3540
     tcgcaggcca gtcttctggt ggagcgacga gatcgccgat ctgcgatcca cctgccaccg      3600
     tgcccgcagg cagctgactc gtgcgcgcgg ctctccgcga gccttggagt gtagcgaggc      3660
     cttcaaaatt gcgaggaagg ccctcaaggt ggccataaga ggcgcaaaga gggaccgatt      3720
     cctgcagctc tgcgacgagg cggaggagga cccttggggc ggtgcgtacc ggatggtggt      3780
     caagagcctg agagctggca gcacagctcc atcggacccc gaggagctgg atgtcattgt      3840
     gcgagcgctg ttcccgagtg gagctccggt gaccgtggag ccgagcgcgg accgccaccc      3900
     cgatgtcgac tgcgaagtct cggaagagga ggtgattcgg ctgggaagga gcgtgcacca      3960
     caagaaggcg ccggggccgg atgccatacc caacagggcc ctgaaaatag ctatagcact      4020
     tcacccgagg gagttcgccg cattgtactc caagtgcctg gaggagggaa tctttccgga      4080
     gaggtggaaa aggcagaagc tgctgctgct ctccaagccg ggcaagccac cgggggagcc      4140
     atcctcctac aggccaatct gcctgaccga caccgctggc aaggtgttcg agaagatcgt      4200
     ggcagccaga ctaactgcgg ccatcgagga gtccggaggt ctctccccga gccagttcgg      4260
     tttccggaaa gggaggtcca cgctcgatgc cattgagttg gtcaaggaca tagctggttc      4320
     ggccatcgcg ggtacgaggt ggaaaggcgg ctccaagagc tactgtctcg tggttacgct      4380
     ggacataagg aacgccttca acaccgcgga ctggaaccga accttggagt ccctcgtcgc      4440
     cctgaatatc ccagggtact tactaaaagt agtaaggagc tactttagtg agagagtgct      4500
     cgtagtggcg tcagctatgg gttccagagc atacgaagtc tctgccggag tcccccaggg      4560
     ctccgtgttg ggacccctgc tctggaacac catgtacgac ggggttctgc gactacctat      4620
     gcccagtggc actactgttg tcgggttcgc cgacgacgtg gcagtggtcg taaccgccaa      4680
     ggagcgtacc gctgcggaag acctggcgaa cgaagcgatc ggaacgatcg aggcatggct      4740
     tacgagcgcc ggcctggaac tagcggcgca caaaacggag gcagtcctga tctcgagcag      4800
     gaaagcggtg gaaacggccg agatccgggt cggtggaacc gcgatcagat cgcagagggc      4860
     gatcaaatac ctcggcgtcc taatcgacac acggctgtca ttcagggagc acctggagta      4920
     tgcccagaag aaggccagcg ggacggcagg aagtctcgcc cgcatactgc tcaacaccag      4980
     agggcccaag cagatcacca ggaagctgct gacgagcgtc gtaacatcmc aaatattgta      5040
     tgcggcgccg gtgtgggcaa aagcagccgc gacgaaatcs tatatgcggg gcgttgaggc      5100
     cacctacaga ctgtgcgctg ttagggtggc gagcgcgttc aggacggttt cggacgacgc      5160
     cgttctggtg atagccggca tggtccccct gagggagctg gtccgtgaga aggcggaggt      5220
     tcggtgtgcg ctgagaagtc acgaaggacc aggaggcggc gctaaggccg aggcgaagag      5280
     cgcggctaga ggaaggagct acgagagctg gcaggcgaag tgggacgcct cgtccaaagg      5340
     gcgctggacg cacaggctga tccccaacct agtggcatgg atggagcgga agcatggtca      5400
     ggtggatttc tacctgaccc aggttttgag cgggcatggt tgcttccgta gctacctcaa      5460
     gaggttcggt catgacgacg aggatggttg cccggagtgc ggttctggag ttgcggagga      5520
     tgtgtaccac atagttttcg aatgccgcag attcgacgag gagagggccg ccctggagga      5580
     ggtagcagga gcggagatca gggtggacac gctggtgccg atgatgttgg agamtcccag      5640
     gttgtgggaa gcgacagcag cattctctgc caaggtgctg aaggctctca gagtgctgga      5700
     gaggggtaga agggagcgga cgggctaaga ggcctactat tgtgcgaagc attgctttgc      5760
     ggccgtaccg cacaataagg gcccttgcct cgttcctagt ctctaagtat taatgttacg      5820
     ttaggtgttg ttctataaat aaakacgaat ataaaaaaaa aaaaaaaa                   5868
//
ID   R1-1_DSi    repbase;    DNA;    INV; 3570 BP.
XX
AC   .
XX
DT   14-JAN-2012 (Rel. 17.08, Created)
DT   14-JAN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3570
RA   Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1667-1667 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           439..3432
FT                 /product="R1-1_DSi_1p"
FT                 /translation="MMRLIQLNLNHCTAAQDLLVQTVRERRVELALLSEPY
FT                 RTPASPDWAFDRTKKAAIWRCSRETQQITDVLSDIGFVRARVGRWWVYSVY
FT                 LAPSLTLIAFSRALDRLAADARGRTQVLIAGDFNAWSESWGSSTTNARGRM
FT                 VLEAFATLDLALLNHGNRHTFRRAGLGSVVDLTFTSGSSYRLARWRLSEDY
FT                 TGSDHLAIICDLGSPPSSQAQTPAQARIKYKTDSLDTQVFREQFLPTASRQ
FT                 GAELTAVELMRRLKAACDASMQSSRPHSRQRAPVYWWNQEIETARRECLSA
FT                 RRRYQRARGAESFAERQSEYRARRKTLKLAIRESKRKCFLDLCDSADSDPW
FT                 GSAYKVVVKKAYTRTPKLLDPAMLRSVAEHLFPVMDGLRPADPATGDHVDS
FT                 DATVSSDEILELAKLLKDGKAPGPDGIPNRALRLALHLQPDSFAKAFTKCL
FT                 EEGVFPSCWKIQKLLLLPKPGKPPEEPSSFRPICLIDGTGKLLEKLVCIRL
FT                 ERAIADAGDLSRSQFGFRKARSTVDAVNRVVEVAAQAIDGTRWKGGSKEYC
FT                 LMVTLDIRNAFNTARWDRILEALIGFSVPAYLVRIIRSYFSDRVLLCESSE
FT                 GVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLV
FT                 VDKYPGKAEESCNQNIRAIEHWLSSMGLELAPEKTEAVLISSRKAVETATV
FT                 EVGCTKVSSSRAIKYLGVMIDTRLSFREHLAYANSKAAGVNRALSNIMLNS
FT                 RGPKQASRRLLTSVTRATMLYAAPVWAKALGTESYAQGLNATHRLSALRVC
FT                 CAFRTVSNAAALVIAGIPPLDLLAKENEVVFNQTHGRRLSPGVKKAIRAEA
FT                 RQHTLETWQHRWTNEPKGRWTQQLIPNLKPWLERKHGDITFHLTQLISGHG
FT                 CFRSYLMRFGHEDADDCPWCGGGRSETAEHVLFSCVKYARERSSLETVLGG
FT                 RLNADNLVPFMLQGEAEWQAVNSFAAAITTELRRAERARRVHE"
XX
SQ   Sequence 3570 BP; 881 A; 1017 C; 1061 G; 610 T; 1 other;
     caccacggaa gacgagttga agagtgcctt ggaggcccag gcagagatcc ctgcagcagt        60
     cgtggctatc aagagccttc ggcaatcgca gtacggaggg aagactgcgg tgatagcagt       120
     cccagccaat ctgacggacc cgctgatcaa gcgtggcaag ctgagggtag gatggtccca       180
     atgcttgatc aaggagctgg agccacgcca aagatgcttc agatgcctgg aagaaggcca       240
     catagcggcc cactgcagaa gcaccgtgga cagaagccag tgctgcttca gatgcgggac       300
     cgcgggacac aaagccgccg agtgccctaa cgaagctaag tgcttcttgt gcgcaagcag       360
     aggtagccaa gcgaccaacc accaaatggg cacccggaag tgcccattgg cgggtaaagg       420
     agcaccaaag gcactgcaat gatgcggctg attcagctaa acctgaatca ctgcacggca       480
     gcccaagacc tgctagtgca gacggtgcgt gaacgcagag tggagctcgc gctacttagc       540
     gagccctacc gaacgccggc tagcccagac tgggccttcg accgcaccaa gaaagcagcg       600
     atctggaggt gcagcagaga aacccagcaa ataaccgatg ttctttcgga catcggattt       660
     gttagggcca gggtaggcag atggtgggtg tacagcgtat acctagcccc cagcctgacc       720
     ctaatcgcat tcagccgggc actggacaga ctggcagcgg atgctagagg ccgcacccag       780
     gtcctaatag cgggcgactt caacgcatgg tcagagagct ggggcagctc aaccaccaac       840
     gcgagaggca ggatggtgct ggaggctttc gcgacgttgg acctggctct tcttaaccat       900
     ggaaaccggc acacgttcag gcgcgccgga ctgggctctg tggtggacct caccttcact       960
     agcggctcgt cgtacaggct agcgaggtgg agactcagcg aggactacac tggcagcgac      1020
     cacctggcca tcatctgcga cctgggaagc ccaccctcgt cccaagccca gacaccagcc      1080
     caggccagga ttaaatacaa gacggactct ctggacacgc aggtgtttcg agagcagttc      1140
     ctacccacgg cgagcagaca aggagccgag ctgacggcag tggagctgat gaggcggctg      1200
     aaggccgcgt gcgacgccag catgcaatcg agcaggccgc acagccgaca aagagcccct      1260
     gtctactggt ggaaccagga gatagagacg gctcgtcgtg agtgcctctc cgccagacgt      1320
     cgctaccaac gcgcgagagg tgcggagtcc tttgccgaac gccaatccga atacagagcc      1380
     cgcagaaaaa cgcttaagtt agccataagg gagagcaagc gcaaatgctt cctcgaccta      1440
     tgcgactctg ccgacagcga cccatgggga agtgcctaca aggtggtggt caagaaggcg      1500
     tacaccagga ctcctaagct actggaccca gcgatgctcc gcagtgtagc ggaacacctg      1560
     ttccctgtga tggatgggtt acgcccagcc gacccagcca caggggacca cgtcgattcc      1620
     gacgccacgg tcagcagtga cgagatcctg gagctggcaa aactgctgaa ggacggcaag      1680
     gcccccggac ccgacggcat cccgaacagg gcgcttcggc ttgctctcca cctccagcca      1740
     gactcgtttg cgaaggcatt caccaagtgc ctggaggaag gagttttccc gagttgctgg      1800
     aaaatccaaa agctgcttct cctcccaaaa ccagggaaac cacccgagga gccttcatcg      1860
     ttccggccaa tatgcctcat cgatggaact ggcaagctcc tggagaaact ggtgtgcatt      1920
     cggcttgaga gggctatcgc cgacgcgggt gacctctcac ggtcccagtt cggattcagg      1980
     aaagcgcggt ccaccgtcga cgctgtcaac agagtggtcg aagtagcggc ccaagcaatc      2040
     gacggcacca gatggaaggg tggcagcaaa gagtactgcc tcatggtcac tctagacatc      2100
     aggaacgcct tcaacacagc gagatgggac cggatcctag aagcactaat tggcttcagc      2160
     gtcccagcct acctagtcag gatcatacgc agctattttt ctgatcgggt cctactgtgc      2220
     gagtcgtcgg aaggcgtctt caggcaccag gtcaccggtg gagtcccgca aggctcggtc      2280
     ctcggcccgc ttctgtggaa caccatgtac gacgggatac ttcgcctacc gctggtcggg      2340
     aggagcgaga tcgtaggctt cgcggacgac gtggccttgc tcgttgttga caagtatccc      2400
     ggcaaggccg aagaaagctg caaccaaaac atcagggcca tcgaacattg gctcagttca      2460
     atggggctag agctggcgcc ggagaagact gaggctgtcc tgattagctc aaggaaagcg      2520
     gtggagacgg ccaccgtcga agtaggctgt accaaggtgt cctcctctcg ggcaatcaag      2580
     tacctgggag tcatgataga caccaggctt tcgttccggg aacaccttgc ctacgctaac      2640
     tctaaagcag caggagtaaa tcgggcgcta tcaaacataa tgttgaactc ccgaggccca      2700
     aaacaggcga gcagaaggct gctgacgagc gtcacccgag cgaccatgct atatgccgcc      2760
     ccggtgtggg caaaagcgct tggtaccgaa agctacgccc agggcctaaa tgctacccac      2820
     agactttcgg ccctacgtgt ctgctgcgcc ttcagaacag tgtccaacgc ggcggcattg      2880
     gtgatcgcag ggataccgcc tctggacctg ttagcgaagg aaaacgaagt ggtcttcaac      2940
     caaacccacg gtcgaagact ctcccccggc gtcaagaagg caatacgagc tgaagcaagg      3000
     cagcacaccc tggagacatg gcagcacagg tggaccaacg agcccaaggg tcgctggacg      3060
     cagcagctga tacccaacct caagccgtgg ctagagcgga agcacggcga cattacgttc      3120
     cacctaacgc agctgatcag cgggcacggt tgctttcgca gctacctgat gcgctttgga      3180
     cacgaggatg cggatgactg tccatggtgc ggaggtggtc ggagcgaaac agctgagcac      3240
     gttctcttct cgtgcgttaa atacgctagg gaacggagct ctctggaaac cgtacttggc      3300
     ggcagactga atgcggacaa cctagtccca ttcatgctgc agggggaggc ggaatggcaa      3360
     gcggtcaaca gcttcgccgc agcgataacc accgagctca gaagagccga gagagccagg      3420
     agggtccacg agtgagcaaa tcctgatcgt cctcgcgaag caatgcttca cggccatacc      3480
     gcggggagtc ctggatttgc cctcntaaat gttattatgt tgtatagtat atagtttaga      3540
     ataagggttc aataaacgaa ttaaaaaaaa                                       3570
//
ID   R1-1_DSuz   repbase;    DNA;    INV; 5303 BP.
XX
AC   .
XX
DT   11-JUN-2021 (Rel. 27.01, Created)
DT   11-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5303
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 604-604 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           631..2178
FT                 /product="R1-1_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MEEAENPFAGRPVVARSPRQPREDGTDGVAAAFKKGS
FT                 KLARSPAPSTTQVDELIVDTEEAKDTPKRTRDPASPANSQRTTPAKRSKAS
FT                 HEATCLEDLLELGKLLQEVSTKMMDKTARHITVATRETFVRMKALHTNILE
FT                 ANREGGKDDSIRVNGQDAAIVCAKCSRSLQSADKEQQTTPVWRRDSAAQTE
FT                 PWRRISQPTVAGGSVAQVAPPSTRPTQQKSAKAPRSTRKNPPKGPQERDAT
FT                 HAGASKTVSPAIPVAEWEVVKKKPRATRRARPDAVVVQASGKSYSEVLAMV
FT                 TRREDKQLSDLGSCVSKVRRTINGNLLLEVAKGSAESAEAMKESIARVLGD
FT                 AASVRAMSDETKLLVLEIRDIDSIATEQEICAAIASQYGIDAERIRVRSLR
FT                 RGYAESQLAVISLPYSLGKTVLHRGEVRIGWTICRIRERTGPPRCFKCLES
FT                 GHIAVNCKSLVDRSDCCMRCGEKGHKAAKCSKEPSCLFCSAAGRKETRHQA
FT                 GSRLCPATTSGTGRPRPSCN"
FT   CDS           2070..5165
FT                 /product="R1-1_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFILLCGRKKGDQAPGRKQTLPSHNQRDRETSAVMQL
FT                 IQLNLNHCRAAQDLLKQTVRELGSEVAILSEPYRVESSSDWVTDRTGKAAL
FT                 WLCGVSVPPMRDTMAVEGFVRANVGGTWIYSCYLAPSLSLTSFSRIMDELI
FT                 SDLRGRSNVVIGGDFNAWAEEWGSLYTNARGRTILEAIASLDIVLLNEGSQ
FT                 HTFNRAGAGSIIDLSFASSSLSRSTRWRIGEVFTASDHEAILLTVGGPPCQ
FT                 SQPMTGPRKAYRQDTFRTQTFASALEGLAVSELDSADVAANKLAARLEEAC
FT                 DQSMQQRKTFRKHHAPVYWWSEEIASLRRTCLRARRLVQRARGTANLSACN
FT                 SSFKSAKKALKLAIRDSKRESYLKLCDELENDPWGRAYKTVVKRVSAGNRS
FT                 PTDPAVLEGIVQVLFPEGRRHCIPRWTRQIGSQICPVTETELLSAARNLKS
FT                 KKAPGPDLVPNRAVKTLLSLHPGVVASLYNTCMLEGTFPDRWKRQKLLLLP
FT                 KPGKPAGEASSYRPICLLDTIGKVFERVIATRLNAAMEDAGGLSSNQYGFR
FT                 KGKSTLDAIERVTNIAAKAIAGTRWKGGTKKYCLVVTLDIRNAFNTADWGR
FT                 TLEALRSFNIPDYLLNVVHSYLSKRELVLDTSVGPRTYEVTAGVPQGSVLG
FT                 PLLWNTMYDGVLKLPLPSSTDIVGFADDVALVVVAKEVAAVEAAANCAIRA
FT                 VEEWLAVAGLELASHKTEAVLISSRKAVESAHIQIGGSTITSQRAIRYLGV
FT                 MLDTRLSYREHLEFVNKKASETTGSLCRILLNTRGPKQDRRRLLATVVKSQ
FT                 LLYAAPVWAEATAVSSYMRGVNSTYRLCAVRISSAFRTISDDAALVIAGQV
FT                 PLCELVREAKEIRAALAGEQADRSTKTEVKRRARMQSVVNWQAAWDISSKG
FT                 RWTHKLIPSIEPWLSRKHGQVDFYLTQALSGHGCFRSFLKRFGHDTEDGCP
FT                 ECGSGIVEDAQHVLFECRRFGYDRQILTETTGARVRPETFVPLMLLKEANW
FT                 EATAAYAASVLRTLRRTDNERREVTA"
XX
SQ   Sequence 5303 BP; 1319 A; 1417 C; 1626 G; 941 T; 0 other;
     tatctcgttt taaagtcagt gtagcgacgg tcgttaccta aaaagtgtac tgtgtatagt        60
     gcgagacact ccgggactag aggtacgtac cagggcactg ttccggcggg gcctccgaac       120
     gtatccccaa gtcttggact ggtgaggctg ctgtcggttc gtgggccagg ggggggatcc       180
     tctcccgcgc ccatcgagtg agaggctttc acctcgaatt ctctctcacg cgcacagcat       240
     ccacaagctg ccacccgcgc gttttttccc tcatcactgc aaacaacaaa atcagctgtt       300
     tacagtgttg aacaacgtcg gggtaggagc ttaacagcgc ggatccccgc gcctaacagc       360
     acatagtgtt ggaaagcgcc ataaacgcgg gcccagccaa agtttttgaa ttttgaatat       420
     tcgaaattct ccaaattctg gcaccgggat tcagggacgg caaaaggcag aaggccaagg       480
     atcgggctaa attccaaccc ctccgccgcg gcggtgtcta tcaaaagggg cactggggac       540
     cgaaaagggg cggtatatcc cccatcgtaa gcctagggga aatctgtggc cagcgcggga       600
     gcctccctcg aacaaaccgg gtagcccgag atggaggagg ctgaaaaccc tttcgcgggc       660
     agaccagtgg tggcaagatc tccccgccag ccgagggaag atgggaccga cggagttgca       720
     gcggcattta agaagggcag caagctcgcc cgctcgccgg caccttcgac aacccaagtc       780
     gatgagctga tcgtagacac cgaggaagct aaggataccc ctaagaggac gcgtgatcct       840
     gcgagcccag ctaactcgca gaggacaacg ccggccaaaa ggagcaaggc ctcccacgag       900
     gcaacctgtc tggaggatct cttggagctg gggaagcttc tgcaggaggt atccaccaag       960
     atgatggaca agacggcgcg ccacataact gtcgccacga gggagacgtt cgtgcgcatg      1020
     aaggcgcttc acacgaacat cctagaggcg aacagagagg gcggcaagga cgacagtatc      1080
     agggtgaatg ggcaagatgc tgcaattgtg tgcgcgaaat gctctcgaag cctgcagagc      1140
     gccgacaaag aacagcagac aacgcctgtc tggaggagag attctgcagc gcaaacggag      1200
     ccttggcgaa ggataagcca gccgactgtg gctggaggat ccgtggctca agtggcccca      1260
     ccatccacgc gcccaacgca gcagaaaagt gccaaagctc ccaggagcac ccgaaagaac      1320
     ccgccaaaag ggccacaaga gagagatgcg acgcacgctg gcgccagtaa gactgtgagc      1380
     cccgcaattc cggtcgctga gtgggaggtg gtcaagaaaa agccgagggc cacgcgtcgc      1440
     gccagacccg acgccgtcgt tgtccaggcg agcgggaaat cgtacagcga ggtgttagcc      1500
     atggtgactc gaagggaaga taaacagctg tcggacttgg gaagctgtgt atccaaggta      1560
     cgccgcacca ttaacggcaa cctactgctc gaggtggcca aaggcagcgc agaaagtgca      1620
     gaagccatga aggagagcat tgcgagggtg ctaggcgacg cagcgtcagt gcgagccatg      1680
     tcggacgaga ccaaactgct cgttctggag atacgagaca tcgactccat cgcgacggag      1740
     caggaaatct gcgctgcgat tgcgagccag tatggtatcg acgcggagcg catcagagtt      1800
     cggagtctgc gtcgaggcta cgcggagtcg cagctagctg tgatcagctt gccctactcc      1860
     ctggggaaaa ccgtcctcca tcgtggcgag gtgcggattg gatggaccat ctgcaggatc      1920
     cgggaaagaa caggcccccc aagatgtttt aaatgcttgg aatccgggca tattgcagtt      1980
     aactgcaaga gcctagtgga caggagcgat tgctgcatga gatgtggtga aaaagggcac      2040
     aaggcagcca agtgcagcaa ggagccttca tgtttattct gctctgcggc aggaagaaag      2100
     gagaccaggc accaggcagg aagcagactc tgcccagcca caaccagcgg gacagggaga      2160
     cctcggccgt catgcaattg attcagctaa atctgaacca ttgtagggcc gcgcaggacc      2220
     tcctgaagca gacggtgcgt gagctgggtt ctgaggtggc gatactcagt gagccataca      2280
     gagtggaaag cagcagcgat tgggtcacgg atcgcacagg caaagctgca ctgtggctct      2340
     gcggcgtgag tgttccacca atgcgggaca cgatggcagt agagggattt gtccgagcga      2400
     acgtaggcgg cacatggatc tacagctgct acctggcccc cagtctatca ctgacgtcct      2460
     ttagcaggat catggacgag ctgatcagcg acctaagagg aaggagcaac gtggtgatcg      2520
     gaggcgactt taacgcctgg gccgaggaat ggggctccct ctataccaac gccagggggc      2580
     gcaccatcct tgaagcaatt gcgtctctgg acatcgtcct gttgaacgag ggctcccagc      2640
     acaccttcaa cagagctggg gccggttcaa tcatcgatct atcgttcgcg agcagctcgt      2700
     tatcccgtag cacacgctgg aggataggcg aggtgttcac ggccagcgac catgaggcca      2760
     tcctgctgac agttggcggt ccaccgtgcc aaagccagcc gatgaccggg ccaagaaaag      2820
     cctaccgcca ggacaccttt aggacacaga ccttcgccag cgcactggag ggattggctg      2880
     tatctgagct ggactcggca gatgtagcag cgaacaaatt ggcagccaga ctggaggaag      2940
     cctgtgacca aagcatgcag cagcgtaaga cctttcggaa gcaccacgcg ccagtgtact      3000
     ggtggagcga ggaaatcgct agcttgcgca ggacctgcct tcgagccagg aggttagtcc      3060
     aaagggcgag aggcaccgca aacctttctg cctgcaactc tagctttaag agtgcaaaga      3120
     aggcactcaa actggcgatt cgggacagca agagggagag ctacctcaag ctctgtgacg      3180
     agctggaaaa cgacccatgg ggaagagcct acaagacggt ggtcaagcgt gtgagtgccg      3240
     gcaacaggtc gcctactgac ccagcggtcc tggaaggcat tgtccaagtg ctgtttccag      3300
     agggtcgccg ccattgcatc ccccgatgga cgcgacaaat tgggagccag atatgtccgg      3360
     tcacggagac ggaactattg tctgcggcaa ggaacctgaa gagcaagaag gcacccgggc      3420
     cggatttggt cccgaacagg gcagtgaaga ccctgctatc cctccatccg ggcgtggtag      3480
     catcgctcta caacacgtgc atgctggaag ggaccttccc cgacaggtgg aagcgccaaa      3540
     aacttctgct cctgccgaag ccagggaaac cagcgggcga agcttcttcc tatagaccca      3600
     tctgcctgct ggacactata ggcaaggtct tcgaaagggt cattgcaaca aggcttaacg      3660
     ctgctatgga ggacgccggt ggactgtctt ccaaccagta cggtttccgt aaagggaaat      3720
     ctacactgga cgcgatagag agggtcacca atattgctgc taaagccatc gcgggtacca      3780
     gatggaaagg tgggacgaaa aagtattgtc tagtggtcac gctggacata cggaacgcgt      3840
     tcaacacagc cgattggggg aggacactgg aggcactacg gtccttcaac atcccggatt      3900
     acctgctgaa tgtagtgcac agctacctca gcaaaaggga gttggtccta gatacctctg      3960
     tgggccccag gacgtacgag gtgacagccg gtgttcctca aggctcggta ctgggccctc      4020
     tgctttggaa cacgatgtat gacggtgttt tgaagctccc actgccgagc agcaccgaca      4080
     ttgtgggctt tgcggatgat gtcgcgctgg ttgtggtggc caaggaagtt gcggccgtgg      4140
     aggcagctgc aaactgcgca attcgagcag tggaggagtg gctcgcagtg gcgggcctag      4200
     agctggcctc tcacaaaact gaggcggtgc tgatttcaag caggaaagca gtggagtcgg      4260
     cgcacattca gatcggaggg tcaacgataa cttctcagcg tgccataagg tacctgggag      4320
     tcatgctgga cacccgcctc tcctaccgcg aacacctgga gttcgtaaac aagaaggcaa      4380
     gcgaaaccac aggatcgctc tgcaggatcc tgctgaatac caggggaccg aagcaggaca      4440
     gacgcaggct cctcgcgact gttgtcaagt cgcagttgct gtacgcggct ccagtgtggg      4500
     ctgaggccac tgctgtgagt agctacatgc gaggtgttaa ctcgacgtac cgcctgtgcg      4560
     ccgttagaat ttcgagtgcc ttcaggacga tctcggacga cgcagccctt gtcatcgcag      4620
     gccaagttcc cctgtgtgaa ctggtgcggg aggccaagga gattcgcgcg gctctagcag      4680
     gcgaacaggc ggaccgcagt accaagaccg aggtgaagag aagagccagg atgcagagcg      4740
     tcgtcaactg gcaggcagcc tgggacatct ccagcaaggg tcgctggacg cacaagctca      4800
     tccccagcat agagccatgg ctaagtagga agcacggcca ggtggatttt tacctcacgc      4860
     aggcgctgag tggacacggc tgcttccgaa gcttccttaa gcgcttcggg cacgacacgg      4920
     aggacggttg cccagagtgc ggcagcggca ttgtcgagga cgctcagcat gtcctttttg      4980
     aatgtcgccg ctttggctat gaccgccaga tactcacgga gaccaccggg gcaagagttc      5040
     ggccagaaac ctttgtgccc ctcatgctgc tgaaggaggc gaattgggaa gcgacggcag      5100
     cctacgcagc gagcgtactg cgaacgctgc gtcgcaccga taacgagagg agagaagtaa      5160
     cagcctaggt ggctaccatt gcgcgaagca ataccttgcg gtgataccgc gcaaccacgg      5220
     ccccctactc ctgttcttga actcactttt aatgtatata gttgtatgaa ataaatgaat      5280
     ataaaaaaaa aaaaaaaaaa aaa                                              5303
//
ID   R1-1_DT     repbase;    DNA;    INV; 5261 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   03-SEP-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DT.
XX
NM   R1-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5261
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1717-1717 (2012).
XX
RN   [2]
RP   1-5261
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~87% identical to R1-2_DBi.
XX
FH   Key           Location/Qualifiers
FT   CDS           656..2104
FT                 /product="R1-1_DT_1p"
FT                 /translation="MSGRGSGAQHPGASLGVAPNDSGGTPANKGLAPPPNA
FT                 DGFHTPLSSLPDWANMGADPFKKSTAMARSPEKRVECGGKQPGTPPVGGKS
FT                 TPKAADEEQGDVLKQLSGLGSKARELKRLMDGKRSITNPMRDIVDEIDYLQ
FT                 REVLSAVQGIIEEQEKAKETANKTCAEVLASGNSKRPRGQETGKTLAVPAK
FT                 KAMHKAPDSNASQSAKKGKHAGTESTSKPKKPGKKPEEWQQVRQKTRKPRM
FT                 RPPRNDAIVIATSSGGSYADILKKVKAEPQLKELGQAVQAVRRTAKGELLI
FT                 LLNKVSDPKTAELQNTMQAVLGSNVDVRALTETMLVEVKDIDEITEKTDIL
FT                 CAVKSQFDVELPESAVMSLRTAYGGTQTATLRVMPDIGRRLIEKGKIRLGW
FT                 TSCRIRPKITPKRCFKCMEFGHIAGNCRIQEDCXKCCYNCGAKEHQARGCK
FT                 AKACCMLCKRKKEKDCDHPTMSGKCPYFRRAMQGLRGK"
FT   CDS           join(1942..2094,2104..2463,2450..5080)
FT                 /product="R1-1_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLLQLRRKGAPSQRLQGKGLLHALQTQEGEGLRPPNN
FT                 EWEMPVLQEGYARAMKFLQINLNHCAVAQLLLEQNVIEENVDIALISEQYR
FT                 NKNSGEWLADDSKKSAIWSCGNPKLQISRKKSGNCFARAHVNGIAFYSCYL
FT                 PPSHSLRQAISVLEGIAEDARENRPAVISRGLLAGDFNAWATDWGSPRTNP
FT                 RGKALLESFAALDLVLLNSGTKPTFSRAGTSSIIDLTFVSAGLASGSSWEV
FT                 SDTYMGSDHAAIICTIKSRNGPPRVPRTVXGYKIETLDVEMVQMLFEDLST
FT                 SGSAEERANHIADYAKLACDASMQRKGRNPSGRRPAYRWNQSIAEARKDCH
FT                 RARRAYQRSRGRPEFESLQXVFREKRRALEKTIKESKRRCFNNICEEIDSN
FT                 PWGFAYKLVTKRLRVFSRPSPTCPVALKRIVETLFPEQESMARTSQIVNTA
FT                 SIKLTSAEEVLRVLKTILDDKAPGPDGIPNKVLKIAIKANTKEYVDMYNAC
FT                 LTEGVFPSRWKQQRLVLIPKGDKPAEEPSSYRPLCMLDTVGKILERIIHSR
FT                 LEGALVETNGLSEMQYGFRKGLSTIDAVGKLCEIADKAIEGKRWLYGTKQY
FT                 CIAATLDVKNAFNSASWDHTLNALRNLNVPMYIQRVIASYFEGRLLLYETD
FT                 SGQSTHRVSGGVPQGSVLGPLLWNAMYDGILRITMPEGARLIGFADDVAIV
FT                 VSAKKLPDAQRICNEAGERASAWLDAKGLTLAAHKTEAVLISSRQVVETAT
FT                 IKIGEATIKSRPSLKYLGVMIDHRLTFKDHLAYASGKAGRTAAAISRIMAN
FT                 TRGPRQPGRRLLVSVVTSTLMYAAPIWARATETESYMQEADSVQRLCALRV
FT                 CCAFRTVSHDAALVISGIIPIDLLALESVEIRAGSSGIAPAEPLRKRCREL
FT                 TIAKWQERWERSSTGRWTYKLIPELQRWLGRKHGHVDFYLTQLLTGHGCFK
FT                 YYLNRFKHESYPHCPLCESDNEDAEHVFFVCPRFENERRDLSMRVGRTPAA
FT                 CNLVDIMLDSEENWSAVCNMATIVLKKLRIAERLRNSNRIES"
XX
SQ   Sequence 5261 BP; 1553 A; 1237 C; 1447 G; 1018 T; 6 other;
     tgagaaagca gagagtgcgg tcgcgtctta aaatcgctcc gtctaaccct tctagttttc        60
     agcacaaatc aaaaagcgca gccggccatc cggctaggag aaccagcaca mgtacctgga       120
     catcctctgg tggccaggag gccgtgggcg acatctggga attgtatccc caacaggttt       180
     ggcggccagg caggggccgg tcataggcga gggaggggag gtgtctctgc ctcttattat       240
     aaatttccac tcgttgtttg ttagttgttg ccaaattttc actcgcgctt ttattttcgc       300
     aaacacacgt tcagtggtgg aaagcgcttg cgcgatcagc tgatcgtagt gtgcgaaagg       360
     ggctgcgggt gccatagcag cgagcttcgg acagggtgca ggccaagcac gtaagtgtgt       420
     gccgttgcac gtagggaaat actgggcggt tcttttgaat ttgggcggta cttttaaaaa       480
     aaattgaaat atatttattt tttaatattt aagattwatt ctttatttta aattttattt       540
     ttattttctt ttctttaaat tgtgtccgat tgaagatcag caggatactg cgggaaaaag       600
     gtccaacctc cccgaaaaac cagtgcacac gcactgaatc ctccaggcgg ggaaaatgtc       660
     gggcagggga tcgggggcac aacatcctgg cgccagccta ggagttgcgc caaacgatag       720
     tggaggcacg ccggccaaca aaggcctggc gccgccgcct aatgccgacg gctttcacac       780
     gccgttgtcc agtctacctg actgggccaa catgggagct gacccgttta aaaaaagcac       840
     cgcgatggcg agatcgccag aaaaaagggt ggagtgcggt ggcaagcagc ccggcacacc       900
     cccagtagga ggaaaaagca ccccaaaagc tgctgacgaa gagcagggtg atgtgctaaa       960
     acagctgtcc ggcctgggat cgaaggccag ggagctgaag aggctaatgg acggaaagcg      1020
     ctccataaca aaccccatga gggatattgt cgacgaaatc gactatctcc agcgggaagt      1080
     cctgtcggct gtgcagggca taatcgagga acaggaaaag gctaaggaga cagccaataa      1140
     aacctgcgca gaagtgctcg cgagcggaaa tagtaagcgc cccaggggcc aagaaactgg      1200
     gaaaacgcta gctgtaccgg caaaaaaggc gatgcacaag gcaccggaca gcaatgccag      1260
     ccaaagtgct aaaaagggga aacacgctgg gacagagagc accagcaagc ccaaaaaacc      1320
     tgggaagaag cctgaggaat ggcaacaggt tagacagaag acaaggaagc caaggatgcg      1380
     accgcctcgc aatgacgcga tagtgatcgc cacctcctct ggagggtcct atgcggacat      1440
     ccttaaaaag gttaaggctg aaccgcagct gaaagagcta ggacaagccg tacaggctgt      1500
     caggcgcaca gctaaggggg aattactaat cctcctaaac aaggtatctg acccaaaaac      1560
     cgcggagctt cagaacacaa tgcaggcggt cctgggcagc aatgttgatg tcagagcgct      1620
     gactgagaca atgctggtcg aggtaaagga tatagacgag atcaccgaga aaacggacat      1680
     tctatgtgcg gttaaatcac agttcgatgt ggagctgcca gaatccgcgg tgatgagtct      1740
     aaggacggca tacggtggca cgcaaactgc aacacttaga gtcatgcctg acatagggag      1800
     acggctcata gagaagggaa aaatcaggct gggttggact tcgtgtagaa tccgcccaaa      1860
     gataacacct aaaaggtgtt ttaagtgtat ggagtttggc catatagcag ggaactgcag      1920
     gatccaagag gactgcwcaa aatgctgcta caactgcggc gcaaaggagc accaagccag      1980
     aggctgcaag gcaaaggcct gctgcatgct ctgcaaacgc aagaaggaga aggattgcga      2040
     ccacccaaca atgagtggga aatgcccgta cttcaggagg gctatgcaag ggcttagggg      2100
     taaatgaagt tccttcaaat aaacctaaac cactgtgcgg ttgcccaatt gttgctggag      2160
     caaaatgtca tcgaggaaaa cgtagacatt gcactcataa gcgagcaata caggaataaa      2220
     aattccggag aatggctagc agatgatagc aaaaaatcgg caatatggag ctgcggaaat      2280
     ccgaagcttc agattagcag aaaaaaaagc ggaaattgct tcgctagggc ccatgtgaat      2340
     ggtatagcgt tctatagctg ttacctgccg ccaagccata gccttcgcca ggcaatatct      2400
     gtactcgaag ggattgcaga agatgcccgg gaaaatcgcc cagccgtaat tagccgggga      2460
     ctttaacgcc tgggctaccg actggggctc tccccgaaca aatccgaggg gaaaggcgct      2520
     acttgagagc ttcgccgcac ttgacctagt gctgctgaac tctggaacga aaccgacttt      2580
     ttctagagcc ggcaccagtt ccatcattga cctcacattt gtgagcgctg gattggcctc      2640
     gggctccagc tgggaggtta gtgacaccta catgggtagt gaccatgcag caataatctg      2700
     cacgataaag tccagaaatg gcccaccacg ggttcctagg accgtgscag ggtacaaaat      2760
     agaaacgcta gacgtggaga tggtacagat gttgttcgag gacctctcca ctagcggttc      2820
     agctgaagaa cgggcaaacc acatcgcaga ctacgccaag ctagcctgtg atgcatctat      2880
     gcagagaaag ggaagaaacc catcaggaag aagacctgca taccggtgga accaatccat      2940
     tgcggaagcc aggaaagact gccacagggc aagacgcgca taccaacgct caagaggaag      3000
     gcccgaattt gagtcactwc aamtagtttt cagggaaaaa agacgagccc tggaaaaaac      3060
     cataaaagaa agcaaacgca ggtgctttaa taatatatgc gaagaaatag actccaaccc      3120
     atggggcttc gcatataaac tcgtcacaaa acggcttcgg gtatttagta ggccatcgcc      3180
     gacatgccca gtcgccctaa aaaggatagt ggaaacacta ttcccagagc aagagagtat      3240
     ggcgcgaacc tcacagatcg tgaacactgc gagcataaag ctcacaagtg ccgaagaagt      3300
     cctccgggta ttgaagacaa tactggacga caaggcaccg ggaccagatg gcatcccgaa      3360
     taaagtcctt aaaattgcca taaaggcaaa cacaaaggag tatgttgaca tgtataacgc      3420
     atgcctaaca gaaggtgtgt tccctagtcg ctggaaacaa cagcggctgg tactcatacc      3480
     aaagggggac aagccggcgg aggagccttc ttcatatagg ccactctgca tgctagatac      3540
     ggtgggtaaa attctcgaaa gaataatcca ctcccggcta gaaggtgccc ttgtcgaaac      3600
     caacggcctc tcagagatgc agtacggttt tcggaaggga ctatctacca tcgacgccgt      3660
     cggtaaactg tgcgaaatcg cagataaagc catcgagggg aaaaggtggc tgtacggcac      3720
     taagcagtac tgcatagcgg caacgctgga tgttaaaaac gcattcaact ccgctagctg      3780
     ggaccacacg ctaaatgcat tgagaaacct aaatgttcca atgtatatac agagagtaat      3840
     agcgagctac ttcgaaggcc gcctgctcct gtacgaaact gattccgggc aatcgaccca      3900
     cagggtgagc gggggagtcc cacaaggatc agtcctaggc ccattgttat ggaatgccat      3960
     gtacgatggg atccttagga tcacgatgcc cgaaggggca cgactcattg gctttgccga      4020
     tgacgtagct atagtagttt ctgcaaagaa actcccagat gcgcagagga tctgcaacga      4080
     agctggggaa cgagcaagcg catggctcga cgccaaggga ctcaccttgg cagcgcacaa      4140
     gacggaagca gtcctgataa gtagcaggca ggtagtagag acggcaacta tcaaaattgg      4200
     agaagccaca attaaatctc gcccaagcct aaaatacttg ggtgtcatga ttgaccaccg      4260
     gctaaccttc aaagatcatc tagcgtacgc tagtggcaag gcaggtagga ccgcggccgc      4320
     aatctcgagg attatggcaa atactcgggg accgaggcaa ccaggtcgga gattactggt      4380
     aagcgttgtc acatcgacgc tgatgtacgc tgctcccata tgggcccgag ccactgaaac      4440
     ggaaagttat atgcaagaag ccgactccgt gcagaggctg tgtgccctgc gggtatgctg      4500
     tgcgttccgc acggtatccc atgatgcggc attggtaata tcgggaatca taccgatcga      4560
     cctgctggca ctggaatcag tggagatccg agcaggcagc tcaggaatcg cacctgctga      4620
     acccctacgg aaaaggtgca gagaacttac cattgcgaag tggcaagaga gatgggaacg      4680
     aagtagcaca ggacgttgga cgtataagct tatcccagaa ctgcagagat ggctgggaag      4740
     gaagcatgga catgtggact tctacttaac gcaactgttg acaggacatg gatgctttaa      4800
     atactatcta aataggttta agcatgaaag ttatccgcac tgtccactct gcgagtcgga      4860
     taacgaagac gcagaacacg tgttttttgt ctgtccgaga tttgaaaatg aacgaagaga      4920
     tctgagcatg agggttggga ggacgccagc cgcttgtaac ctggtggata ttatgcttga      4980
     ctcagaagaa aattggtctg ctgtatgcaa catggccaca atagtactca aaaaactgcg      5040
     catcgcagaa agactgcgaa attccaatag gatagaatcc tagagagccc taagggcatt      5100
     ccccccccgg cgaagtaata cctaacggca gtaccgccgg ggaagcgggg agggggtgga      5160
     gtttttactg ggttagagtc ccagacttcg gcaagctagc ccagctccga gttggctttc      5220
     gatgcttttc accaccacta acaaaaaaaa aaaaaaaaaa a                          5261
//
ID   R1-1_DVi    repbase;    DNA;    INV; 5178 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   R1-type non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5178
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila virilis genome.";
RL   Repbase Reports 12(9), 1991-1991 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           731..2044
FT                 /product="R1-1_DVi_1p"
FT                 /translation="KMEDELHAFARRSALQRSPSHQAVTPVQQRVAASSPA
FT                 KASEELPRTLRGTIEKMGLVLNGLTALFNGQRHINGLMREELARVESLQKV
FT                 ALKLCAPETKCDEAQTTPSLARRAEPNVLKTRPTKLGGQKEASTPKRPRDG
FT                 VPEQRRTPSKKAKRQGQNPAKQAVLTHQKTAPANSNLAGHNGNPESWTAVN
FT                 GRKRTQKRPRADAITVRGVGDCTYADMLRLVKSDPALKHLSGDVHGIRKTA
FT                 KGDLLLRLNRKPEHSADELQEAVGKALGDRAVVRTLTETSQVEIKDLDELA
FT                 TKEEVLEAIKSALQDDSLPIETIKSLRPAFGGQQRATVTLPAPKARTLVEK
FT                 AKVRIGWVVCRIRAIDQPKRCFKCQGFGHIAANCTSGDDMKGACFRCGDTG
FT                 HEAKSCSKPPKCSLCIRKGEKSTDHATGSFKCPAYREAVRKMKC"
FT   CDS           2005..5040
FT                 /product="R1-1_DVi_2p"
FT                 /translation="MSGVSRGSTQNEMLRLLQINLNHCIAAXAILEQTVRE
FT                 MRIDIAIISEPHHRETNCPRIWTEDQDGKAALWVCGDPSTSLTKTKSFTGF
FT                 VRAQYGSLWIYSCYLAPSMQLCEFTAALDALVDDARGRKVIIAGDFNAWAV
FT                 EWGSQATNARGRALLESFAALDIALLNFGSENTFTRGGIGSIIDLTFASSS
FT                 LFSATKWQLSDLYTASDHSAIICTIGEGTAASTRSLSRKAYRLDTFDPVAF
FT                 SNAVHSLATAGNAERRASQMACQLSRACDESMQTRKTFRRHHVPTYWWNEN
FT                 IAEARRNCIQARRIYQRARGRPNYAEQQLRYQSARKILKKSIRDSKRECFL
FT                 ELCDSAEYDPWGKAYKTVVKRLYAGKQAQPSDPSELKLIVETLFPIRPDVL
FT                 HTQAIPSSHVAAMPSLIDEVSVEEVLTIARSLKPSKAPGPDGIPNRALKLA
FT                 MSLRPAQFVQLFNMCLMERTFPTIWKLQTLVLLPKPGKPPDDPSSYRPICL
FT                 LDTLGKVLEKLICNRLQVAVDNNGGLSQNQFGFTKAKSTIDALEKVVGIAT
FT                 NAIQGSRWKSGTKKYCLIVTLDVKNAFNTARWDKILDALSTFRVPYYLQET
FT                 IRSYFTGRLLQYDTADGPTTHQVSAGVPQGSVLGPLLWNIMYDGILRLELP
FT                 IDTSIIGFADDVALVVVGKELKDVEESCNHSIDRVHQWLAAAGLELAAHKT
FT                 EAVLVSSRKRVETAHIRVGSATIESARALKYLGVMLDTRMSFKEHLEYVHK
FT                 KAAESCRALSRIMLNTRGPKQQRRRLLMTVNRAVIMYASPIWSRAMAVPSY
FT                 SRGVHSIYRLSALRVSCAFRTVSDEAALVIAGMVPLSELATEAVVCYRAHD
FT                 GSNTANSTRTEARMQSVARWQARWDRASKGRWTHRLIPNLEAWTNRKYGNT
FT                 NFYLTQLLSGHGCFRSYLKRFGHDNTDECSWCGRGIIEDANHVIFECGRFA
FT                 ANRQELEDIMGRPITVXNLVTSMIETAQKWDAASTFAAEVMRELRRVERSR
FT                 RRTADI"
XX
SQ   Sequence 5178 BP; 1481 A; 1339 C; 1397 G; 958 T; 3 other;
     gagattgttt tcatagagtg cggacgcgat ttgcaactgc tccgtgaaaa taaacaaata        60
     aacctgtgaa attaaagtga agttagtgca cgtgtgcagg gaaccgagac aggcctaaga       120
     caccaaaagg tgcgtggtgg tactcactgc gaagcccgtg cagaccattc ctggggtggc       180
     gtctacagtt ccacgatcca ggcgagggga gtggaggcgt ctacttggcg tgtttgtgcg       240
     ctttttgtga gttttaccac tcaattgtat tagccgtctc gcaaagctat ttgtgcagtt       300
     ggttgcattc actctaacag ctgttagtag tgttggctag cgcagttcac aaccagctga       360
     tctgcactat agagccagct gccaaactgc gtagcggaga taccaaccag gcgataagct       420
     gtaactggca gaaagtacag catactttcg ggcttacgct gttcttgcta agcatttaag       480
     ctttggagaa agaacaggca aagaagccga tatcggtgct cactacaggc tccagggcaa       540
     aaaaggagca aaaggtcgcg gaacagacca atttccaacc cccccgccgc ggcggtgccc       600
     ataaaaacgg ggctctggtg accgagtcgg agcggtataa ctcccagcgg ttaatagcca       660
     gagggaaacc gttggccacc gagggacttt cctgtagagc cctgatagtt agagcaggtg       720
     cccagagtga aaaatggagg atgagctgca tgcctttgcg cgccgctctg cactacagcg       780
     atcaccgtca caccaggcgg tcacgccagt gcagcaaaga gtggctgcgt cgtcgccggc       840
     aaaagcgagt gaagagctgc caagaacgct aagaggcacg attgagaaga tgggcttagt       900
     cctaaacggc ttaacggcgc tgttcaacgg acaacgccac attaacgggc tgatgcgaga       960
     ggaactcgcg agagtagaaa gcctgcagaa ggtggcgctc aagctctgtg cgccggaaac      1020
     gaagtgcgac gaggcgcaaa cgacgccgtc attagccaga cgtgcggagc cgaacgtgct      1080
     aaagacgcgc ccaacgaagc tcgggggcca aaaagaggca agcacgccca aacggccgag      1140
     ggatggcgtg ccagagcagc gcagaactcc ctccaagaag gctaaacgcc agggtcaaaa      1200
     cccagcgaag caggcggtgc tcacgcatca aaagacagcc cctgcaaact ccaacttagc      1260
     tggccataat ggcaacccag agagctggac agcagtgaac ggacgtaagc gaacgcagaa      1320
     gcgtcccaga gccgacgcca ttacagtccg cggagtgggt gactgcacat atgccgatat      1380
     gctcaggctc gtgaagagcg acccggccct caagcaccta agtggcgatg tgcatggcat      1440
     tcgcaagacc gcgaagggcg atcttctgct gcgcctcaat aggaagccgg agcactccgc      1500
     agatgagctt caagaagctg tgggaaaggc attgggtgac cgggcggtag taagaacgct      1560
     aaccgaaacg tcccaggtgg agatcaagga cctggatgag ctggcgacta aggaggaagt      1620
     gctcgaagcg attaaaagtg ccttacaaga cgactccttg ccgattgaaa cgatcaaatc      1680
     gctgcgacca gcatttggcg gccagcaaag ggccacagtt actctcccag cgccaaaagc      1740
     caggacgctt gtcgagaagg ccaaagtgag gatcggatgg gttgtctgcc gtattcgtgc      1800
     aatagaccaa ccaaagcgat gctttaaatg ccagggtttt gggcacattg cggcgaactg      1860
     caccagcgga gacgatatga aaggcgcatg cttcagatgc ggggacacag gtcacgaagc      1920
     aaagagctgc tccaagccac caaaatgtag cctttgcata cggaaaggag aaaaatcaac      1980
     ggaccacgct acaggaagct ttaaatgtcc ggcgtatcgc gaggcagtac gcaaaatgaa      2040
     atgttaaggt tactccaaat aaaccttaac cactgcatag ctgctcangc catcttggag      2100
     cagactgtta gggagatgcg cattgatatt gccattatca gcgaacccca ccaccgagaa      2160
     accaactgcc cgagaatatg gaccgaggat caggatggaa aagctgcgct ctgggtatgt      2220
     ggcgacccat cgacatcgct gacaaaaaca aagtccttta ctgggtttgt acgcgcacaa      2280
     tacggcagcc tgtggatata cagctgctac ctggccccaa gcatgcagct ctgcgaattt      2340
     acagctgcat tagatgcatt agtagatgac gcaagggggc ggaaggtcat tattgctggt      2400
     gacttcaacg cctgggcagt ggaatggggc agccaagcaa ctaacgcaag aggtcgtgcc      2460
     ctgttggaaa gcttcgcagc cctagatata gccctgctaa acttcggctc ggaaaatacc      2520
     ttcactcgag gtggtatcgg atccataatc gatcttacct tcgcaagctc gtcacttttt      2580
     agcgcaacaa aatggcaact aagcgactta tacaccgcaa gcgaccactc cgcaataata      2640
     tgcacgattg gtgaaggaac tgcagccagc actagaagcc taagtcggaa agcttaccgc      2700
     ctggatactt tcgaccccgt ggccttttcg aatgcagtcc actcgcttgc cactgccggc      2760
     aacgcagaga gaagagcctc ccaaatggca tgccagctat cgcgtgcctg tgacgagagc      2820
     atgcaaaccc ggaaaacgtt tcggcgccac catgtaccca cgtactggtg gaacgaaaat      2880
     attgccgaag cacggcggaa ctgcatccaa gccaggagga tataccagcg agcccgaggt      2940
     agacccaact atgccgaaca gcagctaagg tatcagagtg ccagaaaaat actaaaaaag      3000
     tccataagag atagcaaacg agaatgtttc ctggagctat gcgactcagc cgaatatgat      3060
     ccttggggca aggcgtacaa aactgtcgtt aaaagactct acgccggcaa acaagcgcag      3120
     ccttctgacc caagtgagct gaagttgatt gtggaaacgc tattcccaat cagacccgac      3180
     gtattacaca cgcaagccat accatcgagc cacgtagcag ccatgccgtc tctcatcgac      3240
     gaagtctcag tcgaagaggt gctgacgatc gccagaagcc taaagcccag taaggcaccg      3300
     ggtccggacg gaatccccaa ccgagcactg aaactagcca tgtccttgcg gcccgcgcag      3360
     ttcgtgcagc tttttaacat gtgcctaatg gagagaactt tccccacaat atggaaactc      3420
     caaacgctag ttttattacc gaagcctggt aagccgcccg acgacccatc gtcatacagg      3480
     ccgatttgcc tcctggacac gttaggcaaa gtgctggaga agctaatctg caacaggctt      3540
     caggtagctg tcgacaacaa tggtggcctg tcccaaaacc aatttggttt caccaaggca      3600
     aagtctacaa tagacgctct ggagaaagtg gtcggcatag caacaaacgc catccaagga      3660
     tcgagatgga aaagcggcac aaaaaagtac tgcctcatcg tcacgctgga tgttaaaaac      3720
     gcctttaaca cagccaggtg ggacaaaata ttggatgcat tgtcaacgtt ccgcgtccca      3780
     tattatcttc aggagacgat acgcagctac ttcactggaa gactgctgca atacgacacc      3840
     gcagacggcc ccactacaca tcaagtgtcc gctggagtgc cccaaggctc agttctagga      3900
     cccctcctct ggaacatcat gtacgatggc atcctccgac tggaactccc gatcgataca      3960
     agtatcatcg gcttcgcgga cgacgtggcc cttgtagtcg tcggcaagga attgaaggac      4020
     gtagaggaat cgtgcaacca cagtattgac cgtgtgcacc aatggctggc agcagctgga      4080
     ctcgagctgg ctgctcacaa aacagaagcg gtgttagtca gcagtcgaaa aagagtggaa      4140
     acagcgcaca taagagtcgg cagtgcgaca atagaatcgg caagggcgct aaagtacctg      4200
     ggtgtcatgc tagacacaag aatgtcgttc aaagagcact tggagtacgt gcacaagaaa      4260
     gcagcagagt cctgtcgagc gctatccagg attatgctga acacacgggg accgaaacag      4320
     cagagacgcc gtctccttat gaccgtaaac cgagcggtaa taatgtacgc gtcccccatc      4380
     tggagcagag ctatggctgt tcccagctac agccggggcg tacactctat atatcgccta      4440
     agcgctctac gggtcagctg cgcattccgg acggtatcgg acgaagcggc gctggttatc      4500
     gcaggaatgg tcccgctaag cgaactggca acagaagctg tagtttgcta tagagcccac      4560
     gatggaagca acacagcaaa ctcgactcgc actgaggcaa ggatgcagag cgtagcacga      4620
     tggcaagcac gctgggatcg cgcatctaaa ggacgctgga cgcataggct tatcccaaac      4680
     ttggaagcct ggacaaatcg caagtatggc aatactaatt tttatttaac gcagctccta      4740
     tcaggccacg gatgcttcag gagctactta aagcgattcg gccacgacaa cacagacgag      4800
     tgttcttggt gcggcagagg aatcatagag gacgccaatc acgtcatatt cgagtgtgga      4860
     cgtttcgcag cgaacagaca ggaactggag gacatcatgg gcagacctat cacggtggan      4920
     aacctggtca cgagcatgat agagaccgca caaaagtggg acgctgccag caccttcgca      4980
     gcagaagtaa tgcgagaact caggagagtt gagcgcagca gacggagaac cgcggatatt      5040
     taggtagcaa gaacatgcct gtgaagcaat gcttcgcggc cgttccgcag gcaatccacg      5100
     ctacttaaac aataccccaa ctataaccta agctaaataa ctaagnataa aataaactga      5160
     atacaaaaaa aaaaaaaa                                                    5178
//
ID   R1-1_DYa    repbase;    DNA;    INV; 5381 BP.
XX
AC   .
XX
DT   16-MAY-2009 (Rel. 14.06, Created)
DT   16-MAY-2009 (Rel. 14.06, Last updated, Version 2)
XX
DE   R1-type non-LTR retrotransposon: consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; R1-1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5381
RA   Jurka J.;
RT   "LINE-type retrotransposon families from fruit fly.";
RL   Repbase Reports 9(6), 1155-1155 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           636..1724
FT                 /product="R1-1_DYa_1p"
FT                 /translation="MDSPAGGSAPKGDDPFRRSSRMSRSPTRGVEITVQGA
FT                 GTHAPAVEKGDQTGPHTTAAITSNRTAVVASLAPAATITTSQKKISDLISV
FT                 PTQNIASKSPPGSPIRPLDLSALQHENLRSILDMMDMCAFETQRHVTKETK
FT                 GAITDLAALNTRAIQLQQSTVNVAAPAKDIATQTEAEAQKKRPASSALKSV
FT                 TEKFPVLPPPNKAPKAAATKAKVPNPASFAGVAKNASSTVEWTKVKPKRIR
FT                 KKPEAFILKKTGEASYADILLKMRADPNLSEFGNQVRRIRRTQQGELLLEV
FT                 KGKASENVPLYRGAIEESLKEMAAVRTGTQRMALTCSGMDEATTAEELHRC
FT                 MVSQFECCPRRCEGPAQNA*"
FT   CDS           2072..5038
FT                 /product="R1-1_DYa_2p"
FT                 /translation="MMLDAIKIIQLNVNHCAAAQSLLAHTAAERSVDIMLL
FT                 SEPYSPGIGNPSMILDESGKAAIKCCSPLHVQERAYLPMRGIAYARVKGVH
FT                 IYSCYAPPSDSTDQFEEMLDTLVNHARGRCPTIIAGDFNAWAVEWGSRVSN
FT                 PRGRAVIDAMMMLDLTLLNDGRVPTFNNDRGTSFIDVTFVSRGLVANSSWT
FT                 VLDVVTLSDHALITFSVSSTGTTRSQPRRSLGQAWDTRKFDKDMLQYQIDT
FT                 LLIPTGDAETMAAELMKILVAMCDATMPRKKKVQRKPPVYWWSPVLQQMRS
FT                 ECLKARRRAQRARGSPHQTELLEAFKAKRTAFKHGISAAKAQAYKNLLDSV
FT                 DDDTWGLAYKLVSNKLRKRDVPPSDPDVLANIVAELFPMQSTTWQPLAAAP
FT                 VSDFPSITAQEVVEAARRIKANKAPGLDGIPGVVVKAVALSRPDIFRDTFQ
FT                 QCLLDGVFPARWKSQKLVLLPKGKGPAQAAVSYRPLCLLDIVGKLFERILY
FT                 ARIEAVTESTXGLSSHQYGFRKGKSTLNALTAVRNIAKNALEGDRWLGGKK
FT                 EYCAIVTLDVKNAFNTARWPLILDAMYTMGIPEYLRIAVGSYFRNRILWYD
FT                 TENGPKSYRVSAGVPQGSVLGPILWNIMYDGILAIRKPTGAELHCFADDVA
FT                 ITAVAKTIMETQEKCNATIRAAIDWFEKAGLAIAAHKTEAVLLSSRKKVES
FT                 MQVSVSGTQVSSAESLKYLGVLIDHRLSFKDHAKYASRKAAITSAALSRLM
FT                 PNVGGPRDPARRLLVTVAKATLLYAAPIWSDATKKGSYLNGARMVIRSMAL
FT                 RLIRGFRTISQDAALVLAGMPPADLEIKALVLISNGATRDEAYERVVGEWQ
FT                 TRWQMSQRGRWTYQLIPEIDAWTQCSHKTLDYHMSQFLTDHGCFRAYLHRF
FT                 RHVDSAQCLYCIDAVETAEHVLMHCSRFSAEREQLKALAGDPLSPNGLITA
FT                 MTANVNKWELGHRIIINMMKRVRADETANRAGN*"
XX
SQ   Sequence 5381 BP; 1476 A; 1331 C; 1490 G; 1083 T; 1 other;
     aaagtgtttt ctaatacgga cgtgtttttt atacgctgcg caaaatttcg attattttgg        60
     tgtcaccgtg gccagaacaa ttggttttcg tgcagtgttc catagcggta gtgcgcgggt       120
     gttcgccgca ctatcgaatc gacataaagg agcgcgtaaa caataaaaca gaaggaggta       180
     ttattgcaat cggactgaca ctgcaatttt gcaatttttt gttgtaggtc agctgttaaa       240
     tcagctgttg gtgctgccaa cctatcgcag ttggcgatct agtccgagcg gcgttgccag       300
     acaaacggcg ctaccagacc tgcattggag atcggttagg gcgcgcaacc agctaaattc       360
     aaattcgaat tcaaattcga atctgctttt agagcggtcg ctttcggaaa agggagtcgg       420
     cacaaaggtc gcggacagac cgaaaatcaa cctctcaccc ttgcggtgcc taagtagagg       480
     ctctggtgtc cgagaagagg cggaataacc tccagcagtc aacgcctagg ggaaatctgt       540
     ggcctacgtg ggaactctct tttcaaaaaa gctgatccgc gtgttgggac agaccgagaa       600
     gcatcctctc acccttcttg tgccacgttt gtacaatgga tagtccagcg gggggcagtg       660
     cccccaaagg cgacgacccc ttcaggagaa gctccaggat gtcgcggtct cctacgagag       720
     gagtagaaat aacggtgcag ggtgctggta cccacgcgcc ggcggttgag aaaggggatc       780
     aaacgggccc ccatacgacg gcggcgataa cgagcaaccg cactgctgtg gtagctagcc       840
     tggccccggc agcaaccata acaacaagcc agaaaaagat cagtgatctc atcagcgtgc       900
     cgacgcagaa tatagcgtcg aaatctccac ctggttcgcc aatacggcct ttagacctgt       960
     cagcgctcca gcacgagaat ctgaggagca tcttggacat gatggatatg tgcgcatttg      1020
     agacgcagcg acatgtcacc aaggagacta aaggtgcaat aacggatctg gctgctctta      1080
     atacaagagc gatccagctg cagcagagca cagtcaacgt agcggccccc gctaaagaca      1140
     tcgctacaca gacagaggca gaggctcaga agaagcgtcc agcatcgtcg gccttaaaaa      1200
     gcgtaacgga gaagtttcca gtgttacctc ctccaaacaa ggctcccaaa gcggctgcta      1260
     ccaaggcaaa ggtaccaaac ccagccagct ttgcaggggt tgctaagaac gctagcagca      1320
     cggttgaatg gacaaaggtg aagcctaagc gcatacgcaa aaagcccgag gcgttcatat      1380
     taaagaaaac tggcgaagca tcgtatgccg atatactgct taagatgaga gcagatccga      1440
     acctaagcga gtttggcaac caagtgagga gaattagaag gactcaacag ggggagctac      1500
     tgctcgaggt gaagggcaaa gcctccgaaa acgtaccctt atacagagga gccatcgaag      1560
     agtcccttaa ggaaatggcg gcggtacgca cgggtacgca gagaatggcg ctaacttgta      1620
     gcggaatgga tgaggcgacc acggctgagg aactccatag atgcatggtc tcacaatttg      1680
     aatgttgccc aagaagatgt gaggggcctg cgcaaaatgc gtgacggcac acagatagcg      1740
     actgtgatgc tcagtgcaaa cgatgcaatc accgtgctta aaaggggctc ggttaacgta      1800
     ggctggtctc ggtgccgcat caatcaggat gtacgtccta caagatgctt caggtgcttg      1860
     ggatatggcc atagggcaac caactgcaag gcagccgacc gctccgactg ctgtctgcgg      1920
     tgcggcgtga aagggcataa ggcaaaagga tgcgtggccc caccaaaatg cctcatttgc      1980
     agcgagaatg ttgataggaa tcactcgaca ggtggctttg cgtgccccac ctataaggcg      2040
     aacatcgtaa aaggagtcaa gtgccgtcgc gatgatgctg gacgcaatta aaatcatcca      2100
     gcttaatgtc aaccactgcg cagctgctca gagcctgctg gctcatactg cggcggagcg      2160
     cagcgtagac atcatgctct taagcgagcc ctattccccg ggaattggaa acccttcgat      2220
     gatcttggac gagtcaggca aagcggccat aaagtgttgc agccctctcc acgtccagga      2280
     acgggcctac ctgccgatgc gcggcatagc atatgccagg gtgaagggtg tgcatattta      2340
     tagctgctac gccccgccta gcgacagcac tgaccaattc gaggagatgc tggacactct      2400
     tgtcaatcat gcgagagggc gctgtccgac aattattgct ggggacttta atgcctgggc      2460
     agtcgaatgg ggcagcaggg tatccaatcc cagaggcaga gcggtgatag atgctatgat      2520
     gatgctggac ctgaccttgc tgaacgacgg ccgcgtgccc acgtttaata atgacagggg      2580
     aacctcattt attgacgtca cttttgtcag cagaggccta gtggctaact caagctggac      2640
     ggtactggac gtggtaacgc tgagcgatca cgctctgatc acctttagcg tctcttcgac      2700
     tggcacaacc agaagtcaac cgagaagatc actggggcaa gcatgggata ccaggaagtt      2760
     cgataaggat atgctgcaat atcagatcga caccctacta atcccaacgg gtgacgcaga      2820
     gacaatggcg gcggagctta tgaaaatact cgtagcaatg tgcgatgcga caatgcctcg      2880
     caaaaaaaag gtgcagcgta agccccccgt atactggtgg agccccgtcc ttcaacagat      2940
     gcgatcggaa tgcctcaagg ctaggaggag agcacaacga gccagaggta gccctcatca      3000
     aacggagctt ctggaagctt ttaaagccaa gcgaaccgcg ttcaagcacg gaatctcggc      3060
     ggccaaggca caggcctaca agaatctgct ggatagcgta gacgacgaca cctggggtct      3120
     ggcctataag ctggtaagca acaaactgcg gaagagagat gtcccccctt cggaccctga      3180
     tgtcctggcc aacatcgttg cggagctttt tccgatgcag tcgaccacat ggcagccatt      3240
     agccgcagct ccagtctccg acttcccgag catcactgca caggaggttg tggaggcagc      3300
     aaggcgcatc aaggctaaca aagcccctgg acttgatggc attccgggag tagtcgtcaa      3360
     agcagtggcg ttgtctagac cggacatctt cagggacacc tttcagcagt gccttctgga      3420
     cggagtcttt ccagcaaggt ggaaaagcca gaagctggta cttttgccta aagggaaagg      3480
     tccagcacaa gctgcagtca gctaccgccc actatgcctt ctggacatag taggaaagct      3540
     atttgagcgc atcctatatg cccgaataga ggcggtaacc gagagcacam acggtctaag      3600
     cagccaccaa tatggctttc gaaagggaaa gagtaccctc aacgcactca cggcagtgag      3660
     aaacattgcc aagaacgcgc tcgagggcga cagatggcta ggtggcaaaa aagaatactg      3720
     tgcgattgtc acgctggacg ttaaaaacgc atttaacacg gcaagatggc ctctaatcct      3780
     cgatgctatg tacacgatgg gtatcccgga gtacctcagg atcgctgtag gcagctattt      3840
     tagaaatcgt atcctctggt atgatacgga aaatggacca aaaagctacc gagtctcagc      3900
     tggtgttcca caaggatctg tacttggacc gatcctgtgg aacatcatgt acgatggtat      3960
     actggcaatc aggaagccca caggagctga gctgcactgc ttcgcagatg acgtggctat      4020
     aactgcagtc gccaaaacga ttatggaaac ccaggagaag tgcaacgcaa caattagagc      4080
     ggccatcgac tggtttgaga aagctggact agcaatagcg gcacataaaa ccgaagctgt      4140
     cttattaagc agcaggaaaa aggtggagag catgcaagtc tcagtcagcg gaacccaggt      4200
     gtcttcagct gagtccttga agtacctcgg agtcctcata gaccacaggc tatctttcaa      4260
     ggaccatgct aaatacgcta gcagaaaggc agccatcaca tcggcagcct tatctcgact      4320
     tatgcccaac gtgggaggcc ccagagaccc agccaggagg ctattggtaa ccgtagcaaa      4380
     ggcaacgctt ctatacgctg cgccaatttg gagtgacgcc acaaagaaag gctcatactt      4440
     aaatggagcg cggatggtga taaggtcgat ggcccttagg ctaataagag gctttagaac      4500
     gatatctcag gatgcagcat tagttctagc aggcatgcca ccagccgatc tggagatcaa      4560
     ggctcttgtt ctcatcagca atggtgctac acgggacgag gcctacgaac gggtggttgg      4620
     agagtggcag acgagatggc aaatgtcgca acggggaagg tggacctacc aactcatccc      4680
     ggagatagac gcatggacgc agtgcagcca caaaaccttg gactaccaca tgtcccaatt      4740
     cctcacggac catggctgct tccgggccta cctacatcgt ttccgccatg tagactcagc      4800
     ccaatgccta tactgcattg atgcggtgga aaccgcggaa catgtgctaa tgcactgttc      4860
     taggttctcg gcggagaggg aacagctgaa agcgttagct ggagacccgc ttagtccaaa      4920
     tggattgatc acggcgatga cggcgaatgt aaataaatgg gagctgggac accgcatcat      4980
     cataaatatg atgaaacgag tccgtgccga cgagacggcc aacagagctg gcaattaaaa      5040
     cacagaagga gtgttcctgt gaggtggcgg gataagaata ctacctcagc gttcccggct      5100
     tgtcgtaaaa ggcgactaaa gggtggaaag gaggagcgct acatggccaa tgcatcagga      5160
     agggagagcg acctggcttc acatcctgct catcgaagtc ttaccttgac tggcagttcc      5220
     ggtgagcgtt tataggacag aggagcatac ggaggttttt gttttagtac gtaggcataa      5280
     tcccaccagg ggttatgaat cgtgcatgcc acctacggac ggtaggtggt atctttagaa      5340
     gattttaatt ttcctaccgt aaggcgatac aaaaaaaaaa a                          5381
//
ID   R1-1_Hmel   repbase;    DNA;    INV; 3013 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a R1 element from Heliconius melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3013
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-3013
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2721
FT                 /product="R1-1_Hmel_1p"
FT                 /translation="WALLSGLSLLNVGTALTCVRHNGGSVVDLSFASPSVA
FT                 CQVNNWRVEEEVETLSDHLYIRFDVSAQPALVVQRRGPSQRFPRWAVSRLN
FT                 PELAKEAAIVAKWSSQESIMSSSSSVEIMAGQLQNAMTKICDAAMPRARRW
FT                 SARRKMYWWSPEIAALRSSCIRARRAYTRCRRRDGLDPALESQLQGIYKER
FT                 KKALQHAISLAKREAYQELLAGLNRFPWGRPYLAARKKVRAQSAPLTETLS
FT                 PDFLLRLLVDLFPEPPRHIPPRMAPSSEHEEVSVIPLISEGEMNMALRRLR
FT                 AKKTAPGPDGVPGRXLSIALEHLGEXLRKLFDQCLLTGQFPKLWKEGGLCL
FT                 LRKEGRPLDSPSAYRPIVLLNEMGKILEKIIAARLVQHLEEVGPGLSEAQF
FT                 GFRAGRSTIDALNALKTRSLAATADKDVLLAVSLDVVNAFNSLPFETLREA
FT                 LRYHGVPFYLRRLLNDYLQDRVVLWIGGNGQIGRRSVGCGVPQGSVLGPIL
FT                 WNLGYDWLLRGRLPPGMSVICYADDTLVTARGTSYQEAAHLAEIGTCLVVD
FT                 RIEALXLRVSMPKTEALLFHGPRRGPPRXATLRIQGQDVEVRTQMKYLGLT
FT                 LXGRWSFASHFAQLAPKLVNAAGALGRLLPNVGGPDSPCRQLYVGVLRSMA
FT                 LYGAPVWADSLTVRNKTQLRKAQRLIAVRAIRGYRTVSWTAATLLASDPPW
FT                 ELQAEVLARVHAFRTSERSRGVQPSCEDVERIRRRADEALIRRWRGDLGSP
FT                 AAGLATVEAVRPHLDRWVKRRFGVLTFRLVQVLTGHGCFGKYLHQIARREM
FT                 SPVCHECDASVDSAHHTLAECPAWAPQRHALMAXVGRDLSLASVVGAMLDC
FT                 ERNWSAMVSFCESVIALKEAAERVRESSSNADSLRRRRPGGRRRRYAHLLL
FT                 PLP"
XX
SQ   Sequence 3013 BP; 611 A; 764 C; 928 G; 683 T; 27 other;
     tgggctctgc tctccgggct gtctctcctt aacgtaggga cagcmctcac ttgcgtgcgg        60
     cataatgggg ggtccgtagt ggacctctct tttgcctctc catccgtcgc gtgccaggtg       120
     aataactgga gagtagagga agaagtggag actttgtccg atcaccttta tattcggttt       180
     gatgtgtccg ctcagccagc gctggtggtt caacgtaggg gtccatctca aaggttccct       240
     aggtgggctg ttagtcgact taacccagaa ctggccaaag aggctgcgat tgtggcaaag       300
     tggagctctc aggagagtat aatgagctcc agctcaagcg tcgaaattat ggcaggccag       360
     ttgcagaacg caatgactaa aatttgcgac gctgcaatgc cgagagcccg gcggtggtca       420
     gcccgtcgca aaatgtactg gtggtcccct gagattgctg ccctgcggtc ttcttgcatc       480
     cgggcccgac gggcgtatac aaggtgtagg agaagggacg gtctcgaccc tgcacttgag       540
     agtcagctgc agggcatata taaagaaaga aagaaggctc tgcagcacgc tattagctta       600
     gcgaagcgtg aggcttatca ggagctatta gcaggtctta acagatttcc atgggggcgg       660
     ccctatctgg ctgcccgtaa aaaggtccgt gcgcaaagcg ctcctctaac ggaaactctg       720
     tcacchgact ttctcttacg ccttctggtg gacttatttc cggagccgcc taggcacatc       780
     ccccctagaa tggctccgtc ctctgagcat gaggaggtgt cggttatccc tctcatatct       840
     gaaggagaga tgaatatggc actcaggaga ctgagggcta agaaaacggc tccgggacca       900
     gatggtgtkc caggaagavt tttgagcatt gccctggaac accttggbga gvaacttcgg       960
     aagctatttg atcagtgcct tttaactgga cagtttccga agttgtggaa ggaaggagga      1020
     ctatgcctac tgcgcaagga gggtcgtcct ctggactctc cttccgcata taggccaata      1080
     gtgctgctga atgagatggg caagatctta gagaagatca ttgctgcccg ccttgttcag      1140
     cacctagagg aggtaggtcc tggtctttca gaggcgcagt tcgggtttag ggccggccgc      1200
     tcgaccattg atgccctgaa cgccctgaag acacggtcgt tggccgcgac ggcagataaa      1260
     gatgttcttc tcgccgtctc gttggacgtg gtcaacgcct ttaacagtct gccgtttgag      1320
     acgctaagag aggcacttcg gtaccatggg gtgcctttct atctccggcg gctgttaaat      1380
     gactacctcc aagacagagt agtcttatgg attgggggaa atggccagat cggtcgacga      1440
     agcgtcggtt gcggggttcc acaggggtcg gttttgggcc cgatactttg gaatctcggc      1500
     tatgattggc tcctgcgtgg tcgtcttcct cctggwatga gtgtcatatg ttatgcggat      1560
     gacactctag tcacggccag rggaacgtct taccaggagg cggcacactt ggctgaaatc      1620
     ggcacctgcc ttgtcgtcga ccgtatcgaa gctctksgtc tgagagtctc tatgcccaag      1680
     actgaggccc tcctattcca cggcccgcgt aggggtcccc cccgtarggc tactctgcgc      1740
     atccagggac aggacgtgga ggttcggact cagatgaagt atctgggtct gaccctkrat      1800
     ggacggtggt cattcgcttc gcacttcgct cagcttgcgc cgaagctagt aaacgctgct      1860
     ggggccctcg gcaggctcct gccgaatgtc ggagggccag attctccatg ccgacagctt      1920
     tatgtcggcg tgttgagatc catggctctg tacggtgccc ctgtgtgggc agattctctc      1980
     accgttcgca ataagaccca attgcggaaa gcgcagcgtc tcatagcggt gagagcaatt      2040
     cggggdtacc gtacggtgtc ctggacggcg gcaactctct tggcgagcga tccgccttgg      2100
     gaattacagg cggaagtgct tgccagagtt catgcttttc gcacaagcga gcggtcgcga      2160
     ggcgtacaac catcgtgtga ggatgtcgaa cggatcagga ggagagcgga tgaagccctg      2220
     atccggcgat ggagggggga cctggggtct ccggcggcag gcctggcgac agtagaggca      2280
     gttcgcccac acttggatcg ctgggttaaa aggaggtttg gtgtcctgac gttcagactg      2340
     gtgcaggttc tgacggggca cggttgtttc ggtaagtacc tgcatcagat tgcacgtcgg      2400
     gagatgtcgc cggtgtgcca ygagtgtgat gcctccgtgg attcggcgca tcacactctg      2460
     gctgaatgcc ccgcttgggc cccacaacgc catgccttga tggcggyagt gggtagagac      2520
     ctctcactgg ccagtgtggt aggggctatg ctggactgtg agaggaactg gtctgcaatg      2580
     gtctccttct gcgaatcagt aatcgcattg aaggaggccg cggagcgggt gcgcgagtcc      2640
     agctcgaacg cagactcgct ccgccgccgt aggccagggg gtagaagaag gcggtatgcg      2700
     catcttctac tccccctacc ctagaggagc taccgcggga gggtcaggyt gatcttcctr      2760
     carggttatt gcggatgccc tagggcaccc tgaaagcgay gatggcctgc aaaaggcggg      2820
     ccttccaccg aggcgtcgta gtagtatgcg cgagcgatcc tgcggcgtct cattttggtg      2880
     gagagggtth ccgctgggtt ttagtgggta bgatcggtyt caccggtgag tcccacagta      2940
     ccgctcatcc gtaaggcacg ccttccgtat gggcggtctg ygtaaatrca tttcccagvr      3000
     aaaaaaaaaa aaa                                                         3013
//
ID   R1-1_HMM    repbase;    DNA;    INV; 5443 BP.
XX
AC   .
XX
DT   04-SEP-2012 (Rel. 19.10, Created)
DT   04-SEP-2012 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-5443
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2816-2816 (2014).
XX
DR   [2] (Consensus)
XX
CC   It is similar to the TRAS family of silkworm, but only a minor
CC   fraction of this family are flanked with telomeric repeats
CC   (CCTAA)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           209..1534
FT                 /product="R1-1_HMM_1p"
FT                 /translation="MCPDPGSLRNPRRSGVPERLADPNELPDRPIPPEGKE
FT                 RDEPKNSVTEEXPGPRKRPSYASRTAEAKAWLTKAKIHLGNSRNLKSDIKA
FT                 EVTGAIERLYQLVKEAEAERLKEGGSTKDLREREEEKDSGEVKGKREEELS
FT                 KKLEAHALLIKENGEKMEELKRVLEHQRITLEKNTYASVAAGETKRVSPQP
FT                 AALHSVVVSSKNATDTGEEVLAHIREAVDAKDGWVRVEKVRKAKDRKVILG
FT                 CSSEAERERVKERLKRASDRLHVEEVKNKDPLLILRDVLTYNTDADILSAL
FT                 RKQNRGVFEGVPDEEFRAEIKFRRKARNPLSSHLIMSVSPGVWNRAVAAGA
FT                 LHIDLQKVRVADFSPLVQCSLCLGYGHSRRFCKETEPKCSHCGGSHMRTDC
FT                 ESWQNNKAASCCNCVGARLERADHNAFSTECPVRRKWDALARATTAYC"
FT   CDS           1380..5213
FT                 /product="R1-1_HMM_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="GRTVKAGRTTKRHRAVTALGPDSNGPTTMHSAQNARS
FT                 EGSGTRWPGQPQRTAKGAPVVQTRAGYTVVQANLQRSKLATNELMMFTERT
FT                 GTAIALLQEPYVGSIRTVKNYGGARIYQNTNIGEGTVKAAVAVFDQSLDVI
FT                 QCPELTTNNIAVVRIRTESWEITAVSYYFEPEQQIEPYLNHLERISRERGN
FT                 TRILIGGDANAKSAWWGSTSTDLRGEVMSGALDQFGLQVLNEGNTPTFDTV
FT                 RGIRRITSHIDVTACTDDLFNLVEEWRIDERATSSDHNTIIFKINLRKSRG
FT                 ITINRTTRVYNTKKANWKKFREKLLISLEQNYITETKIKLINNKTDIDCTV
FT                 ENYIKIINTVCEESIPKKKNKEKFNLPWWNEELAALKHEVATLKRRIRCAA
FT                 PVRRSKVVGEYLKAKEEYQEKEKSAQLASWKSFCEKQDREGIWEGIYRVIG
FT                 RTAKREQDILLKRNGKTCGPEDSAALLAEVFYPDDDPVQDGAEHCRIRKRA
FT                 EGINDGEKCERLDPPFTTYEMLAAVNGFNPKKAPGSDGLGADICQHAIATC
FT                 PDIYLGIANKCLELGHFPKIWKIATVVALRKPGKSDYTEPKSYRPIGLLPV
FT                 MGKILEKLLITRIRWHILPGLCTRQYGFMPQKSTEDSLYDLMGYINDKLLL
FT                 KKLVLIVSLDIEGAFDSAWWPAIKTRLAEESCPINLRRVIDSYLQDRRVAV
FT                 RYAGAEYSKNSTKGCVQGSIGGPTLWNLLLDPLLHGLVRQQIYCQAFADDV
FT                 VLVFEGDTGLELSLRANAALAYVQEWGTTNKLKFAPHKTQAMMVTRKLKYD
FT                 TPRLTMGGIGVEFSKEIKILGLTIDDKLTFNSHVNKLSVKVTNIXKQLSRA
FT                 AKASWGLQPEVIKLIYTAVVEPVVLYAASAWAKEAXKLGVRKRLDALQRGF
FT                 AQKIVRAHRTVSLNASLVLAGLLPLDLRVQEAAALYEIKRGKSEAVLGDRQ
FT                 IERRVGPFGLQHPAEGTALKFSSLEDREQVDRHNCQAVRMFTDGSKFEERV
FT                 GAAISVWNGDAETRAFKLKLASHCSVYQAELLALCRATALMLENPASSFGL
FT                 YTDSRSSLESVIGQKSLHPLVVQIRDNLRRCRTQNKHVCLFWVKAHAGLEG
FT                 NERADELAKLATKLKKRPDYDACPISFAKRLLRQKSIGEWNRRYQSGQTAS
FT                 GTKMFFPDVAGAYKTTRRLKMDTVLTQILTGHGGFSQYLHRFKCRESPSCI
FT                 CEPGTAESVTHILCECPVHSSERAQLEIRTGKRIAADNLKTLIRDRETHEA
FT                 FVGFCRSVGSKVIKRNK"
XX
SQ   Sequence 5443 BP; 1658 A; 1287 C; 1465 G; 1026 T; 7 other;
     attctgacac ggtaggccga gaggggaaga ttagattttt attgaaaaat cttttggttc        60
     ccctcacccc attacatatc ttcttccttc tttatttact cccggcagtt ttttatattt       120
     atttgactct gggtggctct atacaccacc cagtttgcat tgacaagtcc ctctggcaat       180
     accaaaatgt tcacacacca tcgaaaggat gtgcccggac cctggatctc tcaggaatcc       240
     cagaagaagt ggggttcctg aacgactcgc cgatccgaac gagctccccg accgtcccat       300
     cccgcccgaa ggaaaagaaa gagacgaacc gaagaatagt gtgaccgagg aaakccccgg       360
     ccctaggaag agaccaagtt acgcgagcag gacagccgaa gccaaggcgt ggctcacaaa       420
     agccaaaatc caccttggaa actcgcgtaa cttgaagtcc gacattaaag ccgaggtcac       480
     gggcgccata gagagattat accaactcgt gaaggaggcg gaagcagagc ggcttaagga       540
     aggagggagc acgaaggatc taagagagag agaggaggag aaagatagtg gcgaggtgaa       600
     aggaaaaagg gaagaggagt taagcaagaa attggaagcg cacgctctgc ttattaaaga       660
     aaatggagag aaaatggagg agttgaagcg ggtcctagaa caccagagga taacgctcga       720
     aaagaacaca tacgcgagcg tggcggccgg cgaaaccaaa agggttagcc cacagccagc       780
     cgcactacac tcggttgtgg tctcctcaaa gaacgccact gacaccggcg aggaagtact       840
     cgcacatata agagaggcgg tcgatgccaa agatggctgg gtcagggtgg aaaaggtcag       900
     aaaagcgaag gacaggaaag tgattttggg atgtagttcg gaagcggaga gggaaagagt       960
     caaggaaagg cttaagaggg ctagcgatag gttacacgta gaggaagtaa agaacaaaga      1020
     tccactcctg atcctccgcg acgtgctgac gtacaacaca gacgcagaca tcctaagcgc      1080
     cttgaggaag caaaatcggg gcgtcttcga aggtgttccc gacgaagaat tccgcgccga      1140
     gatcaaattc cgtcggaaag caaggaaccc cttgagtagc cacctcatta tgagtgtgtc      1200
     ccccggagtt tggaatcggg cagttgcggc gggtgcactg cacatcgacc tgcaaaaagt      1260
     cagagtagca gacttttcgc cactcgtgca gtgctcccta tgcctgggat atggacacag      1320
     cagacgcttc tgtaaagaaa ccgagccaaa gtgcagccac tgtggggggt ctcacatgag      1380
     gacggactgt gaaagctggc agaacaacaa agcggcatcg tgctgtaact gcgttggggc      1440
     cagactcgaa cgggccgacc acaatgcatt cagcacagaa tgcccggtca gaaggaagtg      1500
     ggacgcgctg gccagggcaa ccacagcgta ctgctaaagg cgccccagtc gtacaaaccc      1560
     gtgccggata cactgtggtt caggccaatc tgcaaaggag caaactagcc acgaacgagc      1620
     tcatgatgtt cacggaacgc accggaacgg ccatagcgct tctgcaggag ccttacgtcg      1680
     gcagcatcag gaccgtcaag aactatgggg gggcgaggat ctaccagaac accaacatag      1740
     gagaagggac tgtaaaagct gctgtagcgg tcttcgacca aagcctagac gttatacagt      1800
     gcccagaact caccactaat aacatcgccg tggtgaggat ccgtaccgaa tcctgggaga      1860
     tcaccgccgt ctcatactac ttcgagccgg aacagcagat cgagccttac ctgaaccacc      1920
     tagaaaggat cagcagggag aggggaaaca ccagaatcct cataggcgga gacgcaaacg      1980
     caaaaagtgc atggtggggt agcacgagca cggacctgag aggcgaggtg atgtccggtg      2040
     ccctggacca attcgggctg caggtgctga acgaaggcaa cactcctacc tttgataccg      2100
     taaggggaat taggcgaatc accagccaca tcgacgtgac agcatgcacg gacgacttat      2160
     tcaacctcgt ggaggaatgg aggatcgacg agcgtgcgac gagctcggac cacaatacaa      2220
     ttatttttaa aatcaattta aggaaatctc gtggaataac aataaacaga actaccaggg      2280
     tatataacac taaaaaagcc aactggaaaa aatttaggga aaaattatta atctcattag      2340
     aacaaaatta tataacagaa actaaaataa aattaataaa taataaaaca gacatagatt      2400
     gtacagtaga aaattacatt aaaattataa atacagtttg cgaagaatca ataccaaaaa      2460
     agaaaaataa agaaaagttt aacttacctt ggtggaacga agagctcgcc gcactaaaac      2520
     acgaagttgc aacgctgaaa cgtcgaatcc gctgcgccgc tccagtgcga agatccaaag      2580
     tcgtgggtga gtacctgaaa gcaaaagaag agtatcaaga aaaagagaaa agtgcccagt      2640
     tagcaagctg gaagagcttt tgtgagaagc aggataggga agggatctgg gagggaatat      2700
     acagggtaat cggaagaaca gcaaagaggg aacaagacat cttactgaag agaaacggaa      2760
     aaacctgcgg ccctgaagac tcagccgctc tgttggcaga agtcttctac ccggacgacg      2820
     atcctgtcca ggatggagcc gagcattgcc gcattaggaa aagggcggaa ggcataaatg      2880
     atggggaaaa atgtgagcgt ttggatccac catttaccac atacgagatg ctcgcggcgg      2940
     tgaacggctt caacccgaaa aaagcncccg gctcagacgg actaggagcg gatatctgcc      3000
     agcacgcaat agccacttgc cccgacatat atttgggaat tgcaaataaa tgtctggaac      3060
     ttgggcactt cccaaaaatc tggaagatag cgacagtcgt ggccctccga aaacccggga      3120
     aatcggacta cacggaaccc aaatcctatc gccctattgg gctcctgcca gttatgggta      3180
     aaatcctgga gaagctgttg atcacacgca ttaggtggca tatcctccca ggcctctgta      3240
     cccgccagta tggtttcatg ccccaaaaaa gcaccgagga ctccctctac gacctgatgg      3300
     gatatattaa cgacaaactt cttttgaaga aactagtcct aatagtctcc ctggacatag      3360
     agggagcctt cgatagcgca tggtggccag ctataaaaac tagactggct gaggaaagct      3420
     gccctattaa cctaagamga gtgatcgaca gctatctcca ggaccgaagg gttgccgtga      3480
     gatacgccgg cgcggaatac tctaaaaact ccacaaaagg ctgtgtgcag ggatcgatag      3540
     gtggcccaac cttgtggaac cttcttcttg atcccctgct tcatggactc gtacgtcaac      3600
     agatttattg ccaggcattc gcggacgacg tcgttcttgt gttcgaggga gacaccggtc      3660
     tggagttgtc cctgcgggcc aacgccgctc tcgcctatgt tcaggagtgg ggtacaacta      3720
     ataaactgaa gtttgcgcca cacaaaaccc aggcgatgat ggtgacgcgt aagctaaaat      3780
     atgatacccc acgcctgacc atgggcggga tcggtgtcga attctccaaa gaaatcaaga      3840
     tactcgggct gacaatcgac gacaagctca cctttaattc acacgtaaat aaattaagtg      3900
     taaaagtgac caacatttwt aaacagctgt ccagagcggc gaaagccagc tgggggcttc      3960
     agcctgaagt catcaaacta atwtacacgg cagttgtcga gccggtggtt ttgtacgcsg      4020
     cgagcgcatg ggcaaaggaa gcamaaaagt tgggggttcg gaagcgtttg gatgcattgc      4080
     agaggggttt tgcccagaaa atcgtcaggg cccaccgaac tgtctccctg aatgcctccc      4140
     tggtgcttgc tggattgctg ccacttgatc tcagggtgca ggaggcggcg gccctctatg      4200
     agatcaagag ggggaaatcc gaagccgtcc ttggggacag gcagatcgag cggagagttg      4260
     ggcccttcgg attgcagcac ccggcagagg gaacagccct caaattctcc agcctggagg      4320
     accgagagca ggtggacagg cacaactgcc aagcagtgcg aatgttcaca gacgggagta      4380
     agtttgaaga gcgagttggg gcggccatat ccgtgtggaa tggcgacgcg gaaaccaggg      4440
     ccttcaaact gaaacttgct tcgcactgct cggtctacca ggctgagctt ctggcgctgt      4500
     gcagggccac cgccctaatg ctggaaaatc cggccagctc ctttggccta tacaccgact      4560
     cgagatcatc actcgagtcg gtgataggcc aaaagtccct ccacccacta gtagtgcaaa      4620
     tcagggacaa cctgaggcgt tgtcgcaccc aaaataagca cgtgtgcttg ttttgggtga      4680
     aggcacacgc agggctggag gggaacgagc gcgcggacga gctggccaag ctagcgacca      4740
     aattgaagaa aaggccagac tacgacgcgt gtccgatctc attcgccaaa cgacttcttc      4800
     gtcagaagtc gattggcgaa tggaatcgga gataccagtc tggccaaacg gcctccggta      4860
     caaaaatgtt cttcccggat gtggcaggcg cttacaagac caccaggagg ctcaagatgg      4920
     acacggtact gactcaaata ttgaccggcc acggtgggtt ctcccagtac ttacatagat      4980
     ttaagtgcag ggagagccca tcgtgcatct gtgagccggg caccgcagag agcgtgactc      5040
     acattctatg cgagtgtccg gtccacagta gtgagagggc ccaactcgag atccggaccg      5100
     ggaaaaggat agcagccgac aacttaaaaa cattgataag ggacagggag acccatgagg      5160
     cattcgtggg tttctgtagg agcgtgggca gcaaagtaat aaaaaggaac aaataaatta      5220
     aaagtaattc agcgtcggcg cattcaaagc acattcagtt atttatccaa gatattctaa      5280
     agtcagacaa tcctaaagtc aatttcatca ttggcctagt gccacttctt caaaatttaa      5340
     atcagttgaa taaaatgaat cgaaaacaaa gtctctgatt acgtcagagg gacgagaaaa      5400
     taaaaaaaaa aaaaaaaaaa aacaaaaaaa gaaacaagaa caa                        5443
//
ID   R1-1_HSal   repbase;    DNA;    INV; 5095 BP.
XX
AC   .
XX
DT   26-APR-2012 (Rel. 19.04, Created)
DT   26-APR-2012 (Rel. 19.04, Last updated, Version 1)
XX
DE   R1-type non-LTR retrotransposon from the Harpegnathos saltator
DE   genome: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-5095
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Harpegnathos saltator
RT   genome.";
RL   Repbase Reports 14(4), 1045-1045 (2014).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1430..3580,3417..4757)
FT                 /product="R1-1_HSal_1p"
FT                 /translation="MQRMSELGAGLGVVAEPYWVPVRSVNWFGSPDGSVAM
FT                 VANPAAGTPPCVFRENGSSYVAVDWGPITVVGVYLPHHRNKAGLGELAPVK
FT                 RVLDRIGELVRRCHPRPVVIAGDFNAHSEGWGCSPRQRDPRGEAVIGWAAG
FT                 LGLLLMNRGSTSTCVRPGGQSVIDLTWATPSAAGLFQEWRVEAEGESLSDH
FT                 RHIAWALRLPKPARVLARCPGEGNFPLPKRWALNRLDTDRFRAAVLAATWH
FT                 LDVGPGEWDPSPAEGAGEIVGIVASACDAAMPQSHPRRRRATYWWTEELEN
FT                 LRDSSVQARRRYYRARRRGGDVAGTKEGYLRAREALKAAIVEAKRAAWEQM
FT                 VSSLDDDPWGRPYKRVMGKIRPWAPPPTESLDRQALEGLLDALFPRAEGGP
FT                 PEIPTPPLGEGDWDEGLAVSPEELTAARRRLGAKGKAPGPDGIPGRAWALA
FT                 LGEGNLSAATCRVLSGCLREGVFPPEWRRAKLVLLPKEGKAPGSASAYRPI
FT                 CLLDEAGKMLERIVADRLVQHLSSKGPNLHDRQYGFRPGRSTLDAIQCFRD
FT                 LTRAVVEEEGGVLLAVSLDITNAFNTLPWPEIGRALEHHGVPVYLRRILSA
FT                 YFGGRDLAFPVEGGVQGRRAMERGVPQGSVLGPLLWDIAFDRVLRTPLPPG
FT                 CHVVCYADDTLVVAGGRAGGKPASERRRHWHRWWEPSETWVSRWRPKRPRP
FT                 CSFTAGVGGRRRRPGSSPGGELGGSPPPSGDGIGIGGGNHQRPGSQGGAPK
FT                 DPGRVLSRQGSGGAAGDPGPRRWRPRPRRADDEISRPDAGQPMELRTPLQG
FT                 TGPQGAQGRTGCSQPDAHPRGPRLEGSPPVRHGGALDRPVRGAHMGATAGG
FT                 LPRRKARAAAGPEARANQGDSGVPYRVVHGGDHPGRRPPCGAPRRGEAPPL
FT                 LEGEGAPRGGEPVGQGPEGSEAPGRGPDPGEVEGLAVRPPGARASDGRGCP
FT                 PLPVRVAGRRGRGLSFRLAQVLTGHGCFGRYLRRIGKELTTRCHHCPALED
FT                 TAHHTLAACPAWAGERRVLAGAVGCREGEXSLPRMVKAMCGSEEAWAAAVS
FT                 FCEAVMSQKETAEWGRRPHRARGAAPGGRGTRQRARGGAGRGGLPDPRGPG
FT                 APSAARARHRSQGGSRGRRAAFPAFPPPSDRTSRDRGERCPGWGWARSPTN
FT                 PPLPD"
XX
SQ   Sequence 5095 BP; 848 A; 1607 C; 1942 G; 688 T; 10 other;
     cgccgcgctc kgcggccgtc accataacgt gccccgacgg aaaataccat gagttcatgg        60
     tcgaggccag gcgccgaatc agaccggcgg acctsgggat aaactcttcc ctgagggtcc       120
     gccgggccct gaacggggca atgctgatag aggtgcctgg cctcaacgtc ggggcgtccg       180
     ccgaccggct tgcggaggag ctccgcaagc tggcggcgga aaaaggcccc ggttatcgca       240
     tccagcggcc ggcaaagttc gcagcactgc gaattgctgg gctggatgcg acgaccgggg       300
     ccgaagaggt ggcggccgcg gtggccctcg ctgggggatg ctcgcctgag gaagtttcct       360
     cgggcgtgat gagcgtctcc cagcggggag tcggcgccat ggtggtgcgg tgtccgctgg       420
     cggcggccgc taaggtcgcc gccgcggagc gggttccagt gggctggacc cgcgccgggg       480
     tgacggcgct gcccgctcgc gcaacgctgt gcttccgctg cttagagcgg gggcacgtgc       540
     gcgagcggtg caccagcgcc gtcgaccgca gcggtatgtg ctaccgctgc ggtaaccccg       600
     gccaccgcgc caaggggtgc caggaggcgg tgcgctgccc ggtgtgcgcc gaggcgggca       660
     ggccctccgg tcacaagatc ggaggacctg cctgcaaacc ccctcccgga aggagaaagg       720
     ggggaaagaa gaaggaagga ggagagaggc agaaggggaa ggaggacacc ggcgggggga       780
     ggcccgaacc accaccgccg ggggaggacc ggacccgacg aagcctgggg aggagascgg       840
     accagtctcc tccccgccga gggactgagg gggagccggg gcggatccgg cccccccctg       900
     gcaagaaccc cagaggaaaa ggggaggagg gggactcctc ccccgaccta atagactggg       960
     actgggagcc ggagagcccc gatccaggag ccggaggaac ctctgccccg caggaagagg      1020
     agaggggaag aagaggccaa cagggacgag gacgacccgg aggaggasgc ccaggccgca      1080
     aaggtgagga gggtggagcc ctcgggcaca cccccaacag gtgtagagga aggggagtcg      1140
     gtgggagcgc tgcccccgac tcccctgcag gttgactccc cctcgtaccc ccgagaggag      1200
     gaggtcacgc aggtagggac cccccgtgtc tccgcggaga cacccgcgtt ggaggccacc      1260
     atggccgaaa ccccctccgg ggagaccgag acggcttgcc gtcggaagtc tcccaggagg      1320
     agggggtgga cgtaggcagc ccggaggagg cgtgtaaggc ttagccttca cgacactccg      1380
     ggccctacag gccaacctcg gccacggcgc ccgggctcag gacctctgca tgcagaggat      1440
     gtctgagctg ggcgccgggc tgggggtggt cgccgagccg tactgggtgc cggtacgcag      1500
     tgtgaactgg ttcggcagcc cggacggctc ggtggccatg gtggcgaacc ctgcagcggg      1560
     gacccctccc tgtgtattca gggagaacgg gtcctcgtat gtggcggtcg attgggggcc      1620
     catcactgtg gtgggggtgt atctccccca ccacaggaac aaggccggtc tcggkgagct      1680
     cgccccggtt aagagggtcc tcgacaggat cggggagttg gtgcgtaggt gccatccccg      1740
     acctgtcgtg attgccgggg acttcaacgc ccactcggaa gggtgggggt gcagtccccg      1800
     gcaaagggac cctcggggcg aggccgtgat cggctgggca gcggggctgg gcctgctgtt      1860
     gatgaacaga ggctcaacca gcacctgtgt gcggccgggg gggcagtcgg tcatcgactt      1920
     gacctgggct accccctcgg ccgccgggtt gttccaggaa tggagggtgg aggcggaggg      1980
     cgaatcgctg tctgaccaca gacatatagc gtgggccctc cgcctcccca aacccgcacg      2040
     ggtgctggcc cgctgcccag gggaggggaa ctttcccctc cccaaaagat gggctctcaa      2100
     tcgattagat acggacaggt ttcgggcggc cgtccttgcg gccacctggc acctagatgt      2160
     ggggccaggt gagtgggacc ccagccccgc ggagggggct ggggaaatwg tgggtatcgt      2220
     ggcgtcggcc tgcgacgccg cgatgcccca atcccacccc cgccggcgcc gggccacgta      2280
     ctggtggacg gaggagctgg agaatctccg agactcctcc gtccaagcca gacggcggta      2340
     ctaccgggcc cggcgacgag gcggggatgt cgcagggaca aaagagggct acctacgagc      2400
     tagggaagcc ctcaaggccg ccatcgtcga ggccaagcga gcggcctggg agcagatggt      2460
     gagctccctg gacgacgatc cgtgggggcg cccatacaag agggtgatgg ggaagatccg      2520
     cccatgggcg cccccaccga cggaatcgtt ggatcgccag gccctcgagg ggctcctgga      2580
     tgccctcttt ccgagggcag aagggggccc ccccgagatc ccgacccccc cgttggggga      2640
     gggagattgg gacgagggtc tggcggtgag tccagaggag ctcaccgcgg ccaggagaag      2700
     actcggggcc aaggggaaag cccctggccc cgacggaatc cctggccggg cctgggccct      2760
     cgccctcggc gagggaaacc tgtccgcggc cacgtgcagg gttctgagcg ggtgtctcag      2820
     ggagggggta ttccccccag agtggaggag ggccaaattg gtcctcctcc ccaaggaggg      2880
     caaggcaccc gggagtgcgt cggcctacag gccgatatgc ctgctggacg aggcgggcaa      2940
     gatgctggag cgcatcgttg ccgaccgcct cgtccagcat ctgtcctcga aggggccgaa      3000
     cctccacgac cgccagtacg ggttcaggcc cggaaggtcc acgctggacg cgatccagtg      3060
     cttccgggac ctgacccggg cggtcgtgga ggaggagggc ggggtgttgc tggcggtgtc      3120
     gctagacata acgaacgcct tcaacaccct gccctggccg gagattggac gggccctcga      3180
     acaccacggg gtgcccgtct atctccggcg gatcctgtcg gcctacttcg ggggcaggga      3240
     cctcgccttc ccggtggagg gcggggtcca gggccggcgc gcaatggagc gcggtgttcc      3300
     gcaggggtcg gttctcggcc ccctgctatg ggacatcgcg ttcgaccggg tgctgcgcac      3360
     tccgctcccc ccgggctgcc acgtcgtctg ctacgcagac gacacgttag tggtagccgg      3420
     ggggagagct ggggggaagc ccgcctccga gcggagacgg cattggcatc ggtggtggga      3480
     accatcagag acctgggtct caaggtggcg ccccaaaaga cccaggccgt gttctttcac      3540
     ggcaggggtc ggggggcgcc gccggagacc cgggtcctcg tagatggcgt ccacgtccgc      3600
     gtcgggccga cgatgagata tctcggcctg acgctggaca gccgatggag cttcggaccc      3660
     cacttcaggg aactggcccc cagggtgcgc aaggcaggac tggctgtagc cagcctgacg      3720
     cgcacccaag ggggcccagg ctggagggct cgccgcctgt acgtcacggc ggtgctctcg      3780
     atcgccctgt acggggcgcc catatgggcg ccacagctgg gggcctgccg cggcggaaag      3840
     cgcgcgctgc ggcaggccct gaggcccgtg ctaatcaggg cgattcgggg gtaccgtacc      3900
     gtgtcgtaca tggcggcgac caccctggcc ggcgtccccc ctgtggagct cctcgccgag      3960
     gagaggcacc tcctctactg gagggtgaag gagctccgcg gggaggggaa cctgtcggtc      4020
     agggccctga ggggtctgag gctccaggcc gaggcccgga cccgggagaa gtggagggac      4080
     ttgctgtccg acccccgggg gcccgggcca gcgacggccg aggctgtccg cccctgcctg      4140
     tccgagtggc aggcaggagg gggcgtggac tgtccttccg tctggcgcag gtgctgaccg      4200
     ggcatgggtg cttcggtcgg tacctgcgcc ggatcggnaa ggagctcacc acccgatgcc      4260
     accactgccc cgcgctggag gacacggcgc accacaccct ggctgcgtgc ccagcatggg      4320
     ccggggagcg ccgtgtcctc gccggggcgg tggggtgccg ggagggggaa mtctcgctcc      4380
     cgcgcatggt caaggccatg tgcgggagcg aggaggcgtg ggcagcggcg gtctccttct      4440
     gcgaggcagt aatgtcccag aaggagaccg ccgagtgggg gcgccgaccg caccgggcgc      4500
     ggggagcggc ccccgggggn cgagggacnc gacagcgggc ccggggcggc gccggccgag      4560
     gagggctccc cgacccgcga gggccgggag ctccctcggc cgcccgggcc cgccaccggt      4620
     cgcaaggggg gagtaggggg cggcgagccg ccttccctgc cttccccccc ccgagcgacc      4680
     ggacaagtag ggacaggggg gagcggtgcc ccggttgggg ctgggcccgc tcccctacaa      4740
     atcctcccct ccctgactag cagggagggg ggtaaggagg gagggtggat gtcccctccc      4800
     tccttgacag gagacaccag aaggccaacc ggcggggcaa cccgccgggg accgcgccct      4860
     ggattccctt cgtggaacag ggcgcggtac acaggtggcg aggggctccc ggaagggagc      4920
     cctggggccg gggggttggg gagggaatac gggagtagtt cccctgactc ccctcctcac      4980
     ggtccgacag gtagacatcc cgcaggggtt ttagtcggta agagtccgac ataaccccct      5040
     cccccccaag ggggggggta tccatgatgg atttcccctg cgtgaccaaa aaaaa           5095
//
ID   R1-1_LHu    repbase;    DNA;    INV; 4928 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.02, Created)
DT   14-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4928
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 482-482 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..4318
FT                 /product="R1-1_LHu_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNCSXILNLVRRSARLASRFRPDRAAVREVVGVPAAE
FT                 FRARSLVGSVVASASSRAPHRVVPERVRVGRGGIQSQVCSLRTVRIEIEKC
FT                 DRIARAIKSFRTVRVILERCDSFIGTNSRSGNVQPREAKIAKKRVRFADPI
FT                 QTHLENSSNDVSSSNSAENSVTATEPAVVCARSTGIRILQLNMRRSQVVSG
FT                 EVRQLASEKRLDVLLLQEPYVRKQNSSHVFYGLGRQIRVAAVRSQRPWAAV
FT                 AISNPNLEMLFVSQLSTTHCVCAEVQAPNFSFYVVSCYFQYSDEIEKHLSH
FT                 LEMVCHSLRGKRMLVALDANARSSLWGPQRTDERGAKLEDLIQAFGLQVLN
FT                 DAAQPPTYWTAGGSSYIDVTLSSPTMSQFIGEWKVRQDWTSSDHNSVDIRV
FT                 RVPKVTGNDRGAETNRFDTRRADWDRFAESLRDLSRSRLEVLGLQSAEEVE
FT                 LMAQELTVVLQEACKSSMPRKRRFRKSNPWWTRELTVIKKSVYRLRRATQV
FT                 GRGEPNYLTLRQEYRVSLRYYRREVRKAKLASWRKFVTSHGNSEAWGYVYK
FT                 QQAEKLRVERVVNTLRRGEYSTNTVEETASYLLDVHVPDDRENEDTDSQSI
FT                 VRENAQVAPNTADAPIFTEREVAEVVKSFKNNKAPGPDLIEVSVLKVACRT
FT                 IPGQIVRLLNGCLQWGVFPSTWKEGSLRVLLKSEDRDEKDPKSYRPICLLS
FT                 VVGKLFEKLIKLRLEDTSMAPDKVSDRQFGFTPGKSTEDAIVELRRMVSAS
FT                 EERYAVALLFDISGAFDNVWWPLVLDSFKNRDCPKNVFGVLRSYFSDRRVQ
FT                 IELGHGKVSKQATRGCPQGSVLGPTCWNVMFDGLLRELEEIAPGQYAAYAD
FT                 DLITVVRGNSRRELEMEGQRIVDRIVSWCKSAKLEISEKKTEAIVLKSEDV
FT                 RRAPIGRRGGDRPDRKRKTNTKKTDLAGRPPTIKIGDKSIKFKNSVRYLGV
FT                 HFDKGMKVGSHCEYLKSKVESLFARLGKLARSTWGLKYRALSTIYRGVFAP
FT                 TVAYAAAGWADLCTERDIRKLQSIQRKVLIPVVGAYRTSSRESLCVVAGAT
FT                 PVEILLQEGRARYEIRRARDTEIGEARVAATDEDAVKRIKAEGRRMWQARW
FT                 SSSTKGRTTYSFFGNISGRMGARWIQPDRWSAQVLTGHGDFRARLASLGLV
FT                 DSGACDCGGGEDTVPHFLLECERFEAQRVALRDMVGADSWRWPEVAPFLVE
FT                 TPEAFSLFSDFCRESLWIKQSEQ"
XX
SQ   Sequence 4928 BP; 1152 A; 1179 C; 1488 G; 1106 T; 3 other;
     cgagatgtgc actatgtccg acaagggtaa aaggccccca taaccatcat gtccagtggc        60
     tgtcggaaac aggggcatgt ctctacctcc tctccacttc tcccttttcc tcctcctacc       120
     cacattataa cccacttccc ctgtggccta tctccccctc cgctgcgcct tccctcgttc       180
     tgaagtgggg gtgggtctgc gcctaggcag gggccggggc gtgggcctgc tcgtgcggat       240
     gcgcggggga aggggcaggg gccgcagagt agagcctacc gggccctgcg ttgtcgggct       300
     aggcctcggc ctggtgcggc ggcgacggaa ccggttggtt tttttttttt tttttttttt       360
     tctaggtcgg gggttggggt gtccgaccgg cgggctcccc cgttttctgt tagtttgggg       420
     atttttcact ctaagaccaa ggtgttggtg ccgtgctcag ggtctgaatg gctgcgggag       480
     tgttttggtt aggcgttaac gcagtcgcta acggtccgct tcggggtacc tgccgacccc       540
     tcggtgtagc taggcttagt gtcgtatagg tggctctacg gcgctggaca tcccttccac       600
     catactcgtg ggaamaaaaa tgaattgttc tgawatttta aatttggtga ggaggagtgc       660
     ccgtttggcc agccgcttcc ggccagacag ggcggctgtt agggaagtgg tgggagttcc       720
     cgccgctgag ttccgtgcgc gatcgctcgt gggctcggtg gtggcctccg cttcttcgag       780
     agcgcctcac cgtgttgtgc ccgagcgagt ccgcgttgga cgcggcggga tacagtccca       840
     ggtttgcagt cttcgtactg tccgcatcga aatagaaaaa tgtgacagga tagcgcgcgc       900
     gataaaaagt tttcgtacag tccgcgtaat attagaaagg tgcgatagtt ttataggaac       960
     aaatagtagg tcaggtaacg ttcagccacg cgaggcaaag attgcaaaga aacgcgttag      1020
     attcgcggac cccatccaga cccacctgga aaactcatca aacgatgtta gctcgtcaaa      1080
     ctcggcggaa aattcagtaa cggctacgga gccagcggta gtttgcgcgc ggtccacggg      1140
     aattaggata ctacaactga acatgcgtcg ttcacaagta gtatcaggtg aggttcgtca      1200
     actggcctct gagaagcgac ttgacgtcct gttattgcag gaaccatacg tcaggaagca      1260
     aaattcaagc cacgtattct atgggctagg taggcaaatt agggtggcag ctgttcgctc      1320
     gcaacgtccg tgggcggcag ttgccataag taatccaaac ttagaaatgt tatttgtctc      1380
     gcagcttagt actacgcatt gtgtctgtgc ggaagtgcaa gcccccaatt tttcgttcta      1440
     cgtcgtgtcg tgctacttcc agtacagcga cgagatcgag aagcacctca gccacctcga      1500
     aatggtgtgt cattcactga gggggaagag aatgttagtt gcgttagatg ccaatgcgcg      1560
     gtcgtctctc tggggccctc agaggacaga cgaaagaggt gccaaactcg aggacctcat      1620
     ccaagcattc ggcctccagg ttctgaacga cgctgctcag ccacccacct actggacggc      1680
     gggagggtcg tcttatatag atgttactct ctcgtcccct accatgagcc aattcatcgg      1740
     cgagtggaaa gtgaggcagg actggacgag cagcgaccac aactccgtgg acatcagggt      1800
     gagggtgccg aaagtaacgg gcaatgatcg gggggccgag accaatcgtt tcgacacacg      1860
     tcgggccgat tgggatcggt tcgccgagag cctgcgcgat ctatccaggt cgcggctcga      1920
     ggtccttggt ctgcagtctg cggaggaagt agagttgatg gcgcaggaac ttacggtggt      1980
     gctccaagag gcctgtaagt cttctatgcc aagaaagcga aggtttagaa aatccaaccc      2040
     gtggtggact agagaactga ctgtcatcaa aaagtcagta tataggttaa gacgtgccac      2100
     ccaggtaggg cgaggggagc ccaattacct cacccttcgc caagagtacc gcgtatcttt      2160
     gcggtactac agaagggagg tgaggaaggc aaaactcgca agctggcgaa aattcgtcac      2220
     gtcgcacggc aactcggagg cttggggcta cgtttacaag caacaagctg aaaagctccg      2280
     ggttgagagg gtggtcaaca ccctccggcg gggcgaatac tctaccaaca ccgtagaaga      2340
     gacagccagc taccttctgg atgtccacgt cccagatgac cgggagaatg aggacacaga      2400
     tagccaaagc atagttaggg aaaacgcgca agttgcgcca aatacggccg acgctccaat      2460
     cttcacggag cgagaagtcg ccgaggtagt taaaagtttt aaaaataata aagcacccgg      2520
     acctgatcta atcgaggtca gtgtcttgaa ggtagcatgt agaacaatcc ccggtcagat      2580
     agtcaggtta ttgaacgggt gccttcagtg gggcgtcttt ccctcgactt ggaaggaggg      2640
     ctcattacga gttcttctga agagcgagga cagagacgag aaggacccga aatcctatag      2700
     gcccatatgt ctcctctctg tagtagggaa actcttcgaa aagctcatta agcttcgcct      2760
     agaggacacg tcaatggcgc ctgataaggt ctccgaccgg cagttcgggt tcacgcccgg      2820
     aaagtcgacg gaagatgcta tcgtggagtt gcggaggatg gtctctgcct ctgaagagag      2880
     gtatgccgtc gccctgctct ttgatatttc gggtgctttt gacaatgtct ggtggcccct      2940
     ggtactagat agcttcaaaa atagggactg ccccaagaac gttttcggag tgctccggag      3000
     ctacttcagc gatcgaaggg tgcagattga attagggcac gggaaagttt ccaagcaggc      3060
     aacgaggggg tgcccgcagg gctccgttct cggtcccacc tgctggaatg ttatgttcga      3120
     cggtctactt agagaattag aagaaatagc tccgggacaa tacgcagctt acgcggacga      3180
     cttaataacg gtagtaagag gaaattcgcg aagagaatta gaaatggagg gtcaaagaat      3240
     tgttgatagg atcgtaagtt ggtgcaagtc cgcgaaacta gaaatttcag aaaagaagac      3300
     ggaagcaata gtcttaaaaa gtgaagacgt acgtagagca cctattggta gaaggggagg      3360
     agaccgcccg gataggaagc gaaaaacgaa cacaaagaaa acagacctag caggaagacc      3420
     cccaacgata aagataggag acaaaagcat taaattcaag aattccgtta gatatctcgg      3480
     tgtccatttt gacaaaggta tgaaagtagg gtctcattgt gagtatttga aaagtaaagt      3540
     agagtcacta ttcgcgagat tgggtaagct agctagatca acatggggtc tgaagtatag      3600
     ggcgctctcg actatttaca ggggagtgtt cgccccgact gtggcgtatg ccgcagcggg      3660
     atgggcagac ctctgtacgg agcgcgatat taggaaatta caaagtatac agcgcaaagt      3720
     gcttattccg gtggtaggcg cgtatagaac gtcgtcgcgg gaatcattgt gcgttgtcgc      3780
     cggtgcgacc cctgtcgaaa tcctcctcca ggaaggcagg gctaggtacg aaattagaag      3840
     agctagggac accgagatag gagaagctag agtcgcagcg acagatgagg atgcggtgaa      3900
     acgcatcaag gcagagggta ggaggatgtg gcaggccagg tggagctctt cgacgaaagg      3960
     ccgtaccact tattcgttct tcggtaacat ttctgggagg atgggcgcgc ggtggattca      4020
     acctgaccgt tggagcgcgc aggtgcttac gggtcatggc gatttccgag cacgcctagc      4080
     gtcgctcgga ctcgtcgaca gcggcgcctg tgactgtggc ggcggtgaag acactgtacc      4140
     gcacttcctt ctggagtgcg aaagattcga ggcgcagaga gtcgctctgc gcgatatggt      4200
     aggggctgac agttggagat ggccggaagt agcacctttc ttggtggaga ctccagaggc      4260
     cttttccctg ttcagcgatt tctgcagaga gtcgctatgg attaagcaat ccgagcaata      4320
     ggcaggcggg gaaaggagtg tagtgggcgt agcgcgcgaa tcgtaaatag attctgggcc      4380
     atccactcgg ggtgcgtcgg agccctcggg cgtgggagcg cagcctcgta aacatctcgg      4440
     gtcaactgcg ttaccggatg gttaggtata ggaattagct ttctgttagg taggttttcc      4500
     aaccttaata tccaatgacg tgtttgtcat gtccttccca cccaacttca tgatcctcat      4560
     ccttattcct tcccaacagg gtcagagcgc gtgtccaggt acgggacacg aatgagcagg      4620
     cctccccgtg gtccccgtgg gcgtggctag ggtgcagggg gcggcggctg ggcgcgtcca      4680
     tcaacgmcgg gtgggtagcg tgtcctgttc gcttctccgg gtgtgcaaag gggtggttgc      4740
     accggtcacg gctgaactgc tcatcctgcg tgcgaacccg caggcgctgc tggatttttc      4800
     tatcgcccgg cttttggggt ttcgctggac agtggagagt attgtggcgt atagcgtttc      4860
     cacgctcagg cagcaggggt tttgttcctt tcgcggttca acaccctcac aatgaatgtc      4920
     cctatcta                                                               4928
//
ID   R1-1_LMi    repbase;    DNA;    INV; 5115 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.11, Created)
DT   27-OCT-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5115
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3185-3185 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(200..580,537..1286)
FT                 /product="R1-1_LMi_1p"
FT                 /translation="MSKYGRVLGIMREIPSGSKIPGCAHIKSFRRTAQFII
FT                 DDINKVPSRLQVQFEGNIYTVYLSMDDVVCYHCKAPGHVKANCPNVVSETN
FT                 NVTNIDNVSDFPALQTATSVNIPVRGRCYAANTSQDGTSEADAMQQIPLRM
FT                 EQVDNISPPTVLKLLPEHTKRRRSISDEGAPERKTKNSETFDNSLASNIXQ
FT                 EDPATDIQSSNVTTDETVVCQTATFSSAPSDSISVLVSGDQLQSATTPCEA
FT                 APAFSSTESHQNPLQPSIIERREDCDDKNSDCASVVSDISMDDMSHCAEXA
FT                 DEDPLSAEEXKSFVKATRKCKKVLPIAKKYTKDYAALRQMIDKNLVRVKDK
FT                 NIRSKLQKLSLALQKETGCKIDQRRIHDKTQPEH"
FT   CDS           join(1648..2247,2362..2688,2630..2947,2863..4923)
FT                 /product="R1-1_LMi_2p"
FT                 /translation="MDFGKLDNIXKFNNGTGVLIAVDSNARSSMWHDRITN
FT                 ERGREMEAYLSVNNLYIMNEKSDITTFESSTGKSNVDLTLTNGCLVQSLHD
FT                 WECCHDXSCSDHRIITFNIGTDSVQRNDNGYHNFKYIVNNANFRVFEESIV
FT                 KELEQQFLNQSAPMTLLDMDKELSMVAERETNIDGLVTDYEAAIDTAYKNA
FT                 FKIKDPLRLKEFSEESFILSRRRNTQKRFVKQNYDLGRNIVVLRLATIRGM
FT                 QSIVDVRTPSDTRKGHDDSKPRGYLNSMLITSFHWITRTKILNTIKMLGTL
FT                 PKCTNKDKISQRRKFVLVRYRNVQTRIKFHNGGNSYCNEQLNPKKSPGENG
FT                 INSLVLLRVFNMFPQFVTTIYNRCLQMACFPKLWKRAKIIPIVKPGKEQSA
FT                 EINKYRPISLLSLKRRYWKNFAWKGTERRNQQVSSNKSFITEAKILEKLLI
FT                 NRIMHFVYSRDLLHKNQYGFTPQTGTTDALMAVKEFVESSLTTKMCVIMVS
FT                 LDVQGAFDAAWWPGILKTLREFNCPANLYNLTRSYFSHRTATLNVNNLLIE
FT                 RSATKGCPQGSCCGPGFWNILYDSLLKLPYSGHSLVIAFADDLIVLTKGES
FT                 PLAAENICNTDMQLISTWASNNKLQFNEQKSKAILITRKRKFASSTIAIYL
FT                 NNKVLQQVDHLKYLGVIIDSKFTFNKHVQHITDKCTVLINALSRSARLNWG
FT                 LRATALQTIYKGAILPILSYGSPMWIDALERQYNRTKINRVQRLINLKMVK
FT                 AYRTTSSEALCVLSGLMPITLKIQEIAKYYNLVKTKDAKQTIDIALEYRSW
FT                 AHPADFTRITEKDASKSYAVEVYTDGSKSDDGVGSGIAIFVNKRLTYQIQL
FT                 KLSNECSNNQAEQFAIVNALEFINNLSNTDTTAVIHTDSRITLDSLRNPKN
FT                 HNLLIEEIRSKIRRLQTHNWLVHFEWVKAHQGIWGNELADNLAKRAARSRQ
FT                 STRYNKIPTSAVKKKLREEFRNKWDIEWHRTKNGGSTKPYFPTIRQRLMIK
FT                 LPISPNFTAMLTGHGKLKAYYQRFKIIEDGTCTCNSAVQTIDHVLFDCCNL
FT                 LKERDHLRKKIAAKGGGWPVSKYDLVHKYTTDFYNFCNSIRFPNV"
XX
SQ   Sequence 5115 BP; 1739 A; 1027 C; 1023 G; 1319 T; 7 other;
     gatattacgc attgttcccg cattgtcggg ggaatatctg tattttcctg aagtcaagta        60
     cgttgatcgc ttggtacaag aaggtgacat tacaattaaa ggaaccctta cttccctgag       120
     gcgtttcaaa agttcaagca ctcgaattgt tttttcgaat gtgtttcctt tcattccttc       180
     tagctcaatt ctgaccgcaa tgtctaaata cggtcgtgtc cttggaatta tgcgcgaaat       240
     accgtctgga tcaaagattc ctggttgtgc tcacattaag tctttcagac gtactgcaca       300
     gtttattatt gatgatatca acaaagtacc atcaagattg caggttcaat ttgaaggcaa       360
     catttacact gtttatttat cgatggatga cgtagtttgc tatcattgta aagctccagg       420
     tcacgtaaag gcaaactgtc caaatgttgt cagtgaaacc aacaatgtca ctaacattga       480
     caatgtcagt gacttccctg ctcttcaaac agccacatcg gtaaatatac cagtgagagg       540
     cagatgctat gcagcaaata cctctcagga tggaacaagt tgacaacatc tctccgccta       600
     cagttttgaa attacttccg gaacatacga agcgacgtcg ctctatttct gatgagggag       660
     caccagaacg taaaacaaag aattcwgaaa cttttgataa ctctctagca tcgaatatts       720
     gccaggaaga tccggcaaca gatattcaaa gttccaatgt cactactgac gaaacagttg       780
     tttgtcagac tgcgactttc agcagtgcgc catctgactc aatttctgtg ttagtgtcag       840
     gagatcaact ccagtctgca acaacaccct gtgaggcagc ccctgccttc tcttctacag       900
     agtcccacca gaaccctctt cagccttcaa ttatagaacg tagagaggac tgcgatgata       960
     aaaattctga ttgtgcttca gtcgtatcag atatatccat ggatgacatg tcgcactgtg      1020
     ctgaamatgc tgatgaggat cccttatcag cggaagaawt caaatcgttt gtgaaggcga      1080
     ccaggaaatg taaaaaagtg ctaccaatcg ccaaaaaata cacaaaggat tatgcagcct      1140
     tgagacaaat gattgacaaa aacctcgtca gggtaaaaga caagaacata cgcagcaaat      1200
     tacaaaagtt gtcactggcw ttacaaaagg aaacaggatg caaaattgat caacgtcgta      1260
     tccatgataa aacacaaccc gaacactaat aatgtacctt caaatgatgt actgaatcca      1320
     ggacaccata ttaaatgcat gcaagtaaat ctacagcatt ctcgagcggc tacagacaat      1380
     cttatggagt atattgtaca acacaatatt gacatcatat ttcttcaaga gccctactgc      1440
     ttgaacaata acacgttgga taggagaaag tacagagtat ttagcacggg aaatacgagg      1500
     aagagagcag cagtggtcgt caccaacaaa ttcatagacc tataacgctg cgtcaacttt      1560
     cagatgaaac acggtggtct tggaagtcac cataggttct cacacatttt atgcagtcag      1620
     tacaatggat attaagctga catcggtatg gattttggta aactagataa catttkaaaa      1680
     tttaataatg gaactggtgt gctcattgcc gtcgacagca acgctcggtc atctatgtgg      1740
     cacgatagaa ttaccaatga acgagggcga gaaatggaag catatttgag tgttaataat      1800
     ctttatatta tgaatgaaaa aagtgacatt acaactttcg agagcagtac tgggaaaagt      1860
     aatgtggatc taactttaac taatggttgt ctcgtacagt cattgcatga ctgggaatgc      1920
     tgccacgack aaagttgctc agatcatcga attatcacat ttaatatagg tacagattca      1980
     gtacaacgca atgataatgg ataccacaat ttcaagtaca tagtcaacaa cgctaatttt      2040
     agagtttttg aagagtcaat tgttaaagaa ctagaacagc agtttctaaa tcaatctgcc      2100
     ccaatgactt tactcgacat ggacaaagaa ttaagtatgg tggcggaaag ggaaacgaat      2160
     atcgacgggt tagtgaccga ctacgaagca gctatagaca cagcatataa gaatgccttc      2220
     aaaataaagg accctttacg actgaaataa aaaaagcggt cggttccatg gtggacaacc      2280
     gaattaacga ttcagaggaa aaaaaaaaaa caaatgctgc caggcgattg tatcaaagaa      2340
     cgcagaatga cgaggtatta agaattcagc gaagagagtt ttatcttaag cagaagaagg      2400
     aatacacaga agcgattcgt caagcaaaac tacgatcttg gaaggaatat tgtagtttta      2460
     cgtctggcaa caatccgtgg aatgcagtct atcgttgacg tcagaacgcc ctcagacacc      2520
     cgaaaggggc acgatgacag taaacctaga ggatacctca actccatgct gattacttca      2580
     ttccactgga taacgaggac gaagatactg aataccataa agatgttagg tacgttaccg      2640
     aaatgtacaa acaaggataa aatttcacaa cggaggaaat tcgtactgta atgaacagct      2700
     gaatcctaaa aagtctccag gagagaatgg catcaatagt ttagttctac tgagggtgtt      2760
     taatatgttt cctcaatttg ttactacgat ctacaatcgt tgccttcaaa tggcatgctt      2820
     ccccaaactg tggaagcgag ctaaaataat accgatagtt aagcctggaa aggaacagag      2880
     cgcagaaatc aacaagtatc gtccaataag tcttttatca ctgaagcgaa gatactggaa      2940
     aaacttttaa taaatcgaat aatgcatttc gtctactcca gagatcttct gcataagaac      3000
     cagtacggtt tcaccccaca aacgggtacg actgacgcgc taatggctgt aaaagaattt      3060
     gtggagagta gtctcacaac taaaatgtgt gtcatcatgg tgagtctgga tgtacagggc      3120
     gcctttgacg cagcttggtg gcctggtatt ttaaagacgt tgcgtgagtt taactgtcct      3180
     gcaaatctgt ataaccttac acgtagctat ttcagtcaca gaactgcaac gttgaatgtc      3240
     aacaaccttc tcatagaaag atctgctacc aaaggatgcc cacaaggttc ttgttgcgga      3300
     ccaggtttct ggaatatatt atatgattcc ttgcttaaat tgccttactc aggacactct      3360
     cttgttatag cctttgccga cgatctgatt gtactaacca aaggagagag tcctcttgcc      3420
     gctgagaaca tctgtaacac agacatgcaa ttaatatcga cttgggccag taataataaa      3480
     ctccaattca acgaacagaa atcaaaagct atacttatca ccaggaaaag gaaatttgcc      3540
     tcatcgacaa tcgcaatata ccttaataac aaagtgcttc aacaagtaga ccatctaaaa      3600
     tatctgggcg ttataatcga cagtaagttt acattcaaca aacacgttca acatattaca      3660
     gataaatgca cggtcttgat taacgctctt tccagatcag ctagactcaa ctggggtctg      3720
     cgggctacag cactgcaaac tatttataaa ggagcaatac tgcctatatt atcgtacggc      3780
     tcaccgatgt ggatagacgc actggagcga caatacaacc gtaccaaaat taatagagtc      3840
     caacggttaa tcaatttaaa aatggtcaaa gcttacagaa cgacatccag cgaagcactt      3900
     tgtgttttat caggtctcat gcccataaca cttaagatac aggaaatagc caaatattat      3960
     aacctggtca aaaccaaaga cgccaaacag acaatcgaca tcgccctaga gtacagaagc      4020
     tgggcacacc cggcagactt tacgaggata actgagaagg acgccagcaa aagctacgct      4080
     gttgaagtat acacagatgg aagcaagtca gacgacggag tgggttcggg gatagcaata      4140
     tttgttaata agaggcttac ttaccagata cagctaaaac tgtctaatga atgctcaaac      4200
     aatcaagcgg aacaatttgc catcgtcaat gctcttgagt tcataaataa tctctcgaat      4260
     actgatacaa ctgcagtaat tcacaccgac agcaggatta ctttggactc tttgcgaaat      4320
     ccgaagaacc acaacttgtt gattgaagaa ataagaagta aaatcagaag gttgcagaca      4380
     cacaactggc tggtgcattt cgaatgggtt aaggcacatc aagggatatg gggaaatgaa      4440
     ctagctgaca accttgctaa aagagcagct cgatcacgac agtcaacacg ctataacaaa      4500
     atacctacaa gtgccgtaaa gaagaaactt cgagaagagt ttaggaacaa atgggacatt      4560
     gagtggcaca gaacaaaaaa cgggggaagc actaaaccgt attttcctac gatccgacaa      4620
     cgtttaatga ttaaacttcc aatatctccg aattttacag ctatgctaac aggtcatggg      4680
     aaactgaaag cctactatca gcggttcaaa ataattgaag acggaacgtg cacatgtaac      4740
     agtgctgtcc aaactattga ccacgtgctt tttgactgct gcaatttatt gaaagagagg      4800
     gaccatctca ggaaaaaaat agctgccaaa ggaggaggat ggcccgtcag taaatatgac      4860
     ttagtacata aatacactac tgacttttac aatttttgta attcaataag atttcctaat      4920
     gtataaaact tttacaattt ttgtaattaa ttaagatttc ctaatgtata aaattgtttg      4980
     ttcctttgta aaccctgtca acttgtatac tgtacttgtg tttgtaagaa catttgatgt      5040
     aaccgcctga atcaaaccat caaacatgta atattgctat gtaatggggc atgttaaata      5100
     ataaataaat aaaaa                                                       5115
//
ID   R1-1_NVi    repbase;    DNA;    INV; 5582 BP.
XX
AC   .
XX
DT   18-AUG-2009 (Rel. 14.08, Created)
DT   18-AUG-2009 (Rel. 14.08, Last updated, Version 1)
XX
DE   non-LTR retrotransposon of R1 clade from Nasonia vitripennis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-5582
RA   Bao W. and Jurka J.;
RT   "R1 non-LTR retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(8), 1801-1801 (2009).
XX
DR   [1] (Consensus)
XX
CC   non-LTR retrotransposon of R1 clade.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(894..2309,2282..2677,2538..3305,3235..5307)
FT                 /product="R1-1_NVi_1p"
FT                 /translation="MCWGHVSCLHRRGDPGGRTHTRTKFDFSMDEATERNN
FT                 LRMEGCDVPADGDAVSGGGSKNLVGSLATINDIAAQNREGTGDIIGGSPQN
FT                 WXAAERKLEDQLLIIRSNLVKMKAKTNVQKNVSRVITDGMCEIYEAVEVGM
FT                 HELQRMKQLRQTLTEVQRTDTEETPRLKRKRDRQTPTPEPGTSDKQELXAK
FT                 DTWATVTNEETKRPRKRRRMLIKXDETKEPKARKTDRSNLKPRRSAILIKP
FT                 AEGKTYADVLLSXRQXVNLTDSKVDVRAIRKTKDGSVLLQLDKEQERQVFQ
FT                 QTIQNVLGQTATVKDVTSKVTLEFMDLDCVTTAQDVADAINRETGTTTDRN
FT                 VHVFDANNRGQALAVCEFDAKEATDLLKKGRIKIGWINCRIRPRLRVPRCY
FT                 RCLGYGHVRVDCKGPDRRDCCWKCGRKGHVGKACTSAPSCFLCAGRANQDL
FT                 AHVPGTASCAVFKAALTEYRTKQTKWTIQDETDKMDLTILQCNLNGSSVAH
FT                 SLLPQIAAETDADVLVISEQYRNLSEPSWIASSSNTAAVWVRGVNAARIID
FT                 SGAGEDYAWVRVGSVTIVSVYLSPNNSAQCARIRRQAGSPGRRRQXPYWRC
FT                 NRGGRLGWALSLLSVSTFLRTIVRSAREYEDKLEALEDVVRXLTGDVIVAG
FT                 DFNARAIEWGMPTTNRRGRLILQMAARLELEVINDGNVTTYRRPGFGNSIP
FT                 DITLATDRMLTRLRGWRVIEDYTASDHQYIVFNLTNDAALRQRQSMRTTRW
FT                 DIGRINRDEIKRQLQNVAIPSADLSQGRTDRAAAERSANDLEKYLQRICEA
FT                 AMPRKRYRQDRRQTYWWTQEIAEIRKECLRLRRLAGRERDSDDKRGYLAGI
FT                 QARETATREGNGTRTIREAISREYKLARRLLRQTINSTKRRCWRRLEDEVD
FT                 SDPWGEGYKIVTRKLGAWNPPETKDADTMERIVHDLFPTHQDRTDDTDMDT
FT                 AVECPLFTVAELESAAAKLKPRKAPGPDGVPGELLQIIVAEQPDALLRLYN
FT                 GCLTAGVFGGPWKGARLVLIAKGKGDPASSSSYRPLSLLNTPGKLYELLLR
FT                 PRLLQAVEAAGDLSDRQHGFRRGHSTIGAITHVIQIVDKTNDICHGARPLV
FT                 LLATLDVRNAFNSARWADILEALETTFRVPAYLVRVVKDYLRDRYLTYETS
FT                 DGTRRRKLTAGVAQGSILGPDFWNILYDGLLRLDMPDDTCLIAYADDVAAV
FT                 ITARNTHLAQLKLNQVMRRVSTWMTDHGLQLALQKTELLLLTRKRIDTIIP
FT                 MNVGTEHTITRNEVKYLGVTLDTKLTFWAHIRNATAKAAETTKALSRLMAN
FT                 TRGPRPSIRRLLMSVTHSIMLYGAEVWADALQVKKRAKAMTSVQRTGALRI
FT                 ACAYRTVSENAIFVIAGVIPIDLLARERKRLYVRSSNVGRADAATEERTRT
FT                 MEEWQTRWTTNGQGRWTHRLIPEVGPWKDRKHGEVDFYLTQFLSGHGYFRR
FT                 YLYRMNRVTTPECTYCGQAWDDAEHTFFRCNRWTEQRQRLETLLGTTITPD
FT                 NVTKLMITSEDAWRSIATYVGSILRGKKEDGCLDN"
XX
SQ   Sequence 5582 BP; 1575 A; 1305 C; 1682 G; 1010 T; 10 other;
     taataataat aataatccca tcgatatgtc cgctccttgt cgtaggcggt tgctttaaca        60
     tcttcgcaac ctgccgggtg atgggcttac gagagcagca gtcctctgag ggagtgaatg       120
     tatggcattc tggtgggagt gtaaatgagg gacgattgaa cgaaactcct taaaaagagt       180
     atcttgatga atcagcgcat ggagcggaga tgagctgcag tagcagaaag ggaaaccgaa       240
     tatgcaagct gcatgccaac cacagtcgga gccgtaggtc ctttaaaaag atcttgaccg       300
     gtcacacaga gacgcaggaa ggcacgcact atcgaagacc tctataaacg ggtgttcttt       360
     gagaagcgaa atcacacgcg gagcacaagc cgggactatg ccctttctgc ggcgaccccg       420
     cagcaatggt agcgtcttgg tggagagaat tgttgatgca tgattgaggg ggtcctataa       480
     acggatatct cccggacgta tcagagtgat agatgggagt gtcttgttgc cgtctaagtc       540
     aggggaaggc tgctctcaaa ctaatcaagc ggaccgccgt gttggccgtg cggtgcgacc       600
     cgtgagctgc caaaaggaga tcctgggtgg ggagacgatc ttaggctgcg tgccgaagtg       660
     actcgagcca cctttggctc ccgctgacgg caagacggga ggtcggctgc ctagccagca       720
     ccgatcaatc ggcttggcga gtgcctgctg tcgtgtgacg cctgctgtaa acttttcaga       780
     gagctgaaca cttttgttcg ggggtgggaa gctcgagaga gcggaggtgg gctagtgcgg       840
     cagtgggttc tatatcctgg tatgatgtac ccagtctggc atcgcctgca ggcatgtgtt       900
     ggggccatgt cagctgcctc catagacggg gggatccagg gggtcggaca cataccagga       960
     cgaagtttga tttcagcatg gatgaggcaa ccgaacggaa caatttgagg atggaggggt      1020
     gcgacgtgcc tgcagatgga gatgcggtca gcggaggtgg aagtaagaac ctggtaggta      1080
     gcctggctac tataaatgac atcgcggcac aaaatcgtga agggacgggc gacataatcg      1140
     gagggtcgcc acaaaactgg raggctgcag agaggaagtt ggaagaccaa ctactcataa      1200
     tacgcagcaa cctggtgaag atgaaggcga agacaaacgt ccaaaagaat gtcagtcgcg      1260
     taattacgga tggaatgtgt gagatctatg aagctgttga ggttgggatg catgaacttc      1320
     aacgtatgaa gcaactgcga cagactctca cagaagtaca aaggacggac acggaagaaa      1380
     cgccacgact caaacgtaaa cgggacagac aaaccccgac tccggaaccg ggaacttcag      1440
     acaagcagga gttgcyggca aaggatacgt gggcaaccgt cacgaacgaa gaaacgaagc      1500
     ggccacggaa acgaagacga atgctgatca aayaagacga gacaaaagag cccaaagcgc      1560
     gcaagacaga tcgctcaaac ctgaaaccca ggcgaagcgc gattttgatt aagccagcag      1620
     agggcaagac gtacgcggac gttctacttt ctatrcgaca garagtgaat ttgacggaca      1680
     gtaaagtgga cgtacgagct attcgtaaga ccaaagacgg ttctgtactg ctacagcttg      1740
     acaaagaaca ggagcgacag gtttttcagc agacgataca aaacgtactg ggacagactg      1800
     ccacagttaa ggacgtgact tccaaggtga cactggaatt catggacttg gactgcgtca      1860
     caacagcaca ggacgtcgcg gacgcgatca accgcgaaac ggggaccacg actgaccgaa      1920
     atgtccacgt ctttgacgcg aataaccgcg gacaagcctt agctgtctgt gagtttgacg      1980
     cgaaggaggc aacggatcta cttaagaaag gccgaattaa aatcgggtgg attaattgcc      2040
     ggatcagacc caggcttcgc gttccgaggt gctacaggtg ccttggctat ggacacgtga      2100
     gggttgactg caaaggaccg gacagacgag actgctgctg gaaatgcggc cgaaaggggc      2160
     atgtaggcaa ggcgtgcaca agcgcgcctt cctgcttcct ctgcgcgggg cgagccaacc      2220
     aagatctggc acacgtgcct ggcacggcct cgtgcgcagt attcaaggca gctctgactg      2280
     aatacaggac gaaacagaca aaatggacct gacaatactc caatgcaacc tgaacgggag      2340
     cagcgtggca cattcgctgc tcccgcaaat tgcggcggaa acggacgcgg acgtactcgt      2400
     gataagcgag cagtacagaa acctctccga gccatcgtgg atcgctagca gctcgaacac      2460
     ggcggcggtg tgggtgcgag gggtgaacgc ggcgcggatt atagacagtg gggccggaga      2520
     agactatgct tgggtaaggg tgggctctgt cactattgtc agtgtctacc tttctccgaa      2580
     caatagtgcg cagtgcgcgc gaatacgaag acaagctgga agccctggaa gacgtcgtca      2640
     garaccttac tggcgatgta atcgtggcgg gcgactttaa cgcgagagcg atcgaatggg      2700
     ggatgcctac gacgaacaga cgaggacgac tgattctaca aatggccgcc cgactagaat      2760
     tggaagtcat aaatgacgga aacgtgacca cctacagacg acccggcttt ggtaattcta      2820
     taccagatat aaccctagcc acggacagga tgttgacaag gctgagggga tggagagtga      2880
     tcgaggacta cacagccagt gatcaccagt acatcgtctt caacctgact aatgacgccg      2940
     cgttgaggca aagacagagc atgcggacaa cacgatggga cattggacgc ataaacaggg      3000
     acgaaatcaa gaggcaactg cagaacgtag caataccttc tgcggatctg tctcaaggac      3060
     ggacggaccg agccgcggct gaacggagtg ctaatgatct ggaaaagtat ctgcagcgca      3120
     tctgcgaggc cgcgatgcca cggaaacgat acagacagga cagaaggcag acctactggt      3180
     ggacgcagga aattgccgaa atcagaaaag aatgcctccg actccgcaga ttagcgggaa      3240
     gggaacggga ctcggacgat aagagaggct atctcgcggg aatacaagct cgcgagacgg      3300
     ctacttagac agacgatcaa cagcacgaaa cgacggtgtt ggagacgact ggaagacgaa      3360
     gtagattcag acccctgggg ggaaggctac aagattgtga ctcgcaaact tggcgcctgg      3420
     aatccccccg agacgaagga cgcggacaca atggagagga ttgtccacga tctctttcct      3480
     actcaccagg acagaacgga cgatacggac atggacaccg cagtggaatg tccacttttc      3540
     acggtggcgg agcttgagag tgctgcagcc aaactgaagc ctcgaaaagc cccgggacct      3600
     gacggcgtgc ctggggagct gctacagatc atcgtagctg aacagcccga tgcgctgttg      3660
     aggctctaca acggctgcct gacggcggga gtgtttggtg ggccttggaa gggcgcgcgg      3720
     ctggtcctca ttgccaaagg taagggggac cctgcttcgt cgtcctccta taggcctcta      3780
     agtctcctga acacgccggg taaattgtac gaattactgc tacgaccgag actgttgcaa      3840
     gcggtggaag ccgccggaga cctctcggac cgacagcacg gatttagacg aggacactca      3900
     acaataggag ctataacaca cgtaatacag attgtggaca agacaaacga catatgtcat      3960
     ggagccagac cactggtact cttggcaacg ctggacgtac ggaacgcttt caattctgcg      4020
     aggtgggcgg acatcttgga ggcgctggag acaaccttcc gggtgcctgc ctacctcgtg      4080
     cgagttgtaa aagactatct acgggaccgg tacctgacgt atgagacatc ggacggtacy      4140
     cgacggagaa agttgacagc aggagtagca cagggctcaa ttctgggtcc tgacttctgg      4200
     aatatactgt acgacggact gttaagacta gatatgccgg acgacacgtg cctcatcgca      4260
     tacgcggacg acgtggcggc tgtaattact gcacggaaca ctcacctggc gcagctaaaa      4320
     ctgaatcagg tgatgagacg cgtaagcaca tggatgacgg atcacggact ccaactggcg      4380
     ctacaaaaga ctgagctact gctactaaca aggaaacgta tagacacaat tatacctatg      4440
     aatgtgggga cggaacatac gattaccaga aacgaagtaa agtatctggg ggtgactcta      4500
     gatacgaaac tgactttctg ggcacacata cgcaacgcta cggctaaagc agcagagacg      4560
     acgaaagcct tgagtagact catggccaac acgcgaggac caagaccgag tatacggcga      4620
     cttcttatga gcgtcacaca ttcgatcatg ctctacggag crgaggtatg ggcggatgcg      4680
     ttacaggtaa agaaacgggc aaaggctatg acgagcgttc aacgaaccgg ggcactaaga      4740
     atcgcgtgcg cgtaccggac cgtatcygaa aacgcgatct tcgtaatagc gggcgtaatc      4800
     ccgatagacc tcctcgcgcg tgagcggaaa cgcttatacg tacggagttc gaacgttggg      4860
     agggcagacg ctgcgacaga agaacggact aggacgatgg aagaatggca gacgagatgg      4920
     acgacaaacg gacaaggtcg ttggacgcac agactgatac cggaggtcgg accctggaaa      4980
     gacaggaaac acggtgaggt ggacttctac ctcacccaat ttctgtcggg acacgggtac      5040
     ttccgaaggt atctatacag aatgaacaga gtgaccacac cggaatgtac gtactgcgga      5100
     caggcttggg acgacgcgga gcacacattt ttcaggtgca accgatggac cgagcagcga      5160
     cagagactcg agacattact aggcacgacg attacaccag ataacgtgac gaaactgatg      5220
     ataaccagcg aagacgcgtg gagaagcatt gcgacatacg ttggtagcat cttgcgaggt      5280
     aagaaagagg atggatgttt ggataattra gcgagagcga gagtgggaga ataagaatat      5340
     aagcgtagct atgaatgact ggaatagtaa ggaatgaatg tgcagaggaa gcgcaaagga      5400
     catgggccca gttcgaagta atgtgataaa ccgtaccggg ctggtgtcgg gcgtacaggg      5460
     agatatgtgt ttagtgggta ggggtggccg ccgccgccga gtcccacact tggagttctc      5520
     gcaagggaac accagtcagt ccgccacaag gattcacagg ctcctatcaa aaaaaaaaaa      5580
     aa                                                                     5582
//
ID   R1-1_PBa    repbase;    DNA;    INV; 1673 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1673
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 753-753 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. incomplete sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1670
FT                 /product="R1-1_PBa_1p"
FT                 /translation="LNRPTAPGPDGIPGRVWSRALSVLGAPVRRLSDSCLR
FT                 WGVFPRRWRRAKLVLLQKEGKPEDAPSAYRPICLLDDVGKMLERIIAGRVV
FT                 RHLSREGPNLSDGQFGFREGRSTIDAILRVRSLTEAIVNGGGVAMVVSLDI
FT                 TNAFNSLPWDVIGEAMKWHGLPEYLISIVRDYFRDRKLEFVTRDGLRRVRG
FT                 VTCGVPQGSVLGPLLWDLAYDRVLRTALPPGASVVCYADDTLLVAGGRDWG
FT                 ETLATANEAVAGAMRNIAGLGLEVAANKTEAMFIHDGSRGPPPEHARIRVG
FT                 AARVGVGPNLKYLGLTLDGRWRFGSHFRLLAPRVEAVANALSRLLPNLGGP
FT                 GARVRRLYAGAVHSVALYGSPVWAGELAANAGSLRLMRRAQRRVALRLARA
FT                 YRTVSHAAATVLAGVPPIELLAELHAGVYRRVRELRQGGGARLTPRAMGQI
FT                 REEERRRVLNSWRVQLGDPSAAGVRTTTAIRPCLAAWLGRAHGGLTFRLSQ
FT                 VLTGHGCFGEYLERIGKERTARCWHCAADRDSAQHTLXECPAXSGERGVLV
FT                 XVIGEDLSL"
XX
SQ   Sequence 1673 BP; 247 A; 524 C; 624 G; 274 T; 4 other;
     ggctgaaccg tcccaccgcc ccgggcccgg atgggattcc gggtcgggtg tggtcccggg        60
     ccctgagcgt gctcggtgct cctgtgaggc ggctgtctga cagctgcctc aggtggggag       120
     tcttcccccg gcgctggagg agggccaagc tggtcctcct ccagaaggag ggcaaaccgg       180
     aggacgcccc ttccgcctac aggccaatat gcctgctgga cgacgtcggc aagatgctgg       240
     agcgcatcat cgcgggccgc gtcgtccgac acctgtcccg ggagggtccg aatctgtcgg       300
     acggacaatt tggcttccgt gaggggagat cgacgattga cgcgatccta cgcgtcaggt       360
     ccctcacgga ggccattgtc aacggggggg gagtcgcgat ggtggtgtca ttagacatca       420
     ccaacgcctt taactccctc ccctgggatg tgatcgggga ggccatgaaa tggcatggac       480
     tccccgaata tttaatctcg attgtccggg attacttccg ggacaggaag ctggagttcg       540
     tcacgcggga cggactccgg cgcgtaaggg gcgtgacgtg cggggtcccg cagggctcag       600
     ttctgggccc acttctgtgg gacctcgcat acgacagggt cctccggacc gccctccccc       660
     ccggcgcgag cgtcgtctgc tacgcggatg atacgctgct cgtcgccggg ggcagggact       720
     ggggggagac tctggcgacg gccaatgagg ccgttgccgg ggccatgcgc aatatcgcgg       780
     gtctgggcct ggaggtggcg gccaacaaaa ccgaggccat gtttattcat gacgggtctc       840
     ggggcccccc tccggaacac gcccggatcc gcgtgggtgc agcccgcgtg ggggtgggac       900
     ccaacttaaa gtatctgggt ctcaccctgg atggccgttg gaggttcggg agccacttca       960
     ggctcctggc ccccagggtg gaggcggtgg caaacgcctt gtcccgcctc ctgcccaact      1020
     tgggtggtcc gggcgcccgc gtgaggcgcc tgtatgcggg cgcggtgcac tcggtggccc      1080
     tttacgggtc accggtgtgg gcgggcgagc tggcggccaa cgctgggagc ctgcgcctga      1140
     tgcgccgggc gcagaggcgc gtcgccctgc ggctggcgag ggcctatcgc accgtgtccc      1200
     atgcggcggc tacggtcctg gcgggggtcc cccccatcga gctcctcgcg gagctacatg      1260
     ccggggtgta ccggagagta cgggagctcc ggcagggggg gggagcgaga ctgaccccca      1320
     gagccatggg ccaaattcgc gaggaggagc ggcggagggt cctaaatagc tggagagtcc      1380
     agctggggga cccttccgcc gccggcgtcc ggacgacaac ggccatccgg ccctgcctgg      1440
     cggcgtggct gggcagggca cacggcgggc tcacgttccg cctctcccag gtgctcaccg      1500
     ggcacggctg cttcggtgag tacctggaga ggatcgggaa ggagcgcacg gccmggtgct      1560
     ggcactgcgc ggccgaccgg gactccgcgc aacacactct ggmggagtgc cccgcgwgga      1620
     gcggggagcg cggggtcctg gtcgmggtga tcggcgaaga cctctcgctg ccg             1673
//
ID   R1-1_PPo    repbase;    DNA;    INV; 5389 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-5389
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3130-3130 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. both truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           356..2548
FT                 /product="R1-1_PPo_1p"
FT                 /note="zinc knuckle."
FT                 /translation="MADFNKQNKNDVEESALRGVTKELRVVLTRTPTPARS
FT                 SAGGGEAESDSDTAASMASAGSGSRWCSVESLEYEGTGRFWREGRGQKRPI
FT                 EEVSPTSNSADSPAKSGRRKGRGRPPTTGEYVGLAAAKQAFLKASEEEIKA
FT                 RAEAELLESITEARRTRSALTPEASLETLSCRAIECDDDTAATVIRRIGAS
FT                 LEVVDKVASKSTNLKGTFVRALHDAVKAIKEDTQTLAQRTLSEETRHLQAD
FT                 NDRLHAEMASLRKELAEIKEEMKKRGSAPTSTDLTIGPAPVARPSSREMLS
FT                 VEEICRTVMVQVGGMVNARLASLEDRLLPERNLRPPLAFERRQEDTTYAAA
FT                 ASGSKAAPSTGAQGAAKKKAPRPPPPPAQPGPSGLKRKRRKKAPAVTTERS
FT                 DSARPSVNPPQRPPSRPLNPDALDENWVKVGKNGRAVKETAKPARRPQPKR
FT                 ANGRVFRSASAPLKTALKMPQSSAVVVTLTEEALKKGLTYSGVLKEAKAKV
FT                 DLKETIGVESVQFRRAVTGATIISIPGATSAAKADVLAQKLQEIYQDNSIR
FT                 VSRPERSVDIKIDGLDDSTTPEEVKECIVKKGECTPDQIRIGTLRPTRSGM
FT                 YGVWAHVPLTAANKLATGRFLVGWVVARVRIGTPKRLYCYRCLQSGHVASS
FT                 CDAEDRSQLCFKCGQEGHKAASCSAQAHCVVCAAAGKNANHRLGSLRCSAP
FT                 KKTAPRRAPVAERSAPPPSGEQMEIAETVQE"
FT   CDS           2553..5318
FT                 /product="R1-1_PPo_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSLRFLQANLNHCARAQDLLIQSLAQWSINXAVASEP
FT                 YTVPDRDNWVGDLEHLVAIYAGDTPPIVSTRRGKGCVGVKLANLTLIGVYF
FT                 SPNRSLAEFEEFLDDXNXFVQWGRPLDVVVAGDLNAKSRAWGSSVSDSRGE
FT                 VLLEWTAQHNLTPLNVGSEHTCVRAQGGSVVDVTFASSALARRVQGWEVLT
FT                 EVETLSDHRYIRCDILPSSSPPSRTCRNSATPPGIGPMWSLRSLDXETAEL
FT                 AXIIGXWSHKMEDXSVXDGVXWLAETLAHISDCAMSKVRPSRRRNKVYWWS
FT                 XDLXRLRKACVVARHQYTRYRRRRSGWNETEERRLYAEYQGAKKTLRGEIA
FT                 ASKDRAWEEFLGSLELDPWGRPYKLVMSKLRPWAPPLTTTLDXALLTSVVP
FT                 ALFPPCARNIGDDPSVSIPPGSVPEVSEAEMXLAKTKMQCKRTAPGPDGIH
FT                 GRVLALAVQHGLDDQLKTLLTKCLQEGEFPXKWKTGRLVLLRKPGKPETSP
FT                 SAYRPIVLLDEAGKLFERIIAGRITQHLTSAGPDLXDSQYGFRRHRSTLDA
FT                 IAKLRDVCAEATSRGGVAIAVSLDIANAFNTLPWDSIMAGLEHHDVPHYLR
FT                 RIVHNYLQGRRIVFPTRDSWESRXVECGVPQGSVLGPLLWNIGYDSVLRGA
FT                 FARGVQLICYADDTLVVATGSDYREAKLRATAGASQVTAKIRGLGLQVALE
FT                 KSEAICFQGPRRRGXQMGQEIVVGGTXIPIRSTLKYLGLTLDXXWSFRPHF
FT                 AALAPKLEATAAALSRIMPNVGGPSPKRRKLFAGVLRSKALYGCPIWADDL
FT                 CQQNRAMLRRSQRTINIRVARAYRTVSYDAGCVVAGLPPWHLEAAALADVY
FT                 WRRARFREEGGEPTPEEVRVWRTHAXNRVMDKWGEELXXARAGSWTLDAIR
FT                 PXLLXWVSRRWGHLSYRL"
XX
SQ   Sequence 5389 BP; 1177 A; 1518 C; 1665 G; 968 T; 61 other;
     gggctcgcca ccccctagct taccgtaatc tagtggtttc ttgatttccc tttatcttct        60
     ctttcttttt tcttcttcat tatgaatatt ttcctgtagt ttttcccccc ccttatttct       120
     tctacccttc aaagacctcc ctcgtggcgg gggggggtat gttgggggcc actagaccgg       180
     ggggcttgcc ttcattggcc ggcccgcgag aaggaaaact ctataacacc cgacagcgaa       240
     gtcgtaaaaa cctgcagata cctggcgccc tctgcagtat gtagccttac ccgtccggaa       300
     tgggcgtcac ccgggggtgg acacttatat cggccccact cgtgggatta agtacatggc       360
     agatttcaat aaacaaaata aaaatgatgt ggaggagagc gcgctgagag gcgttacgaa       420
     ggagctgcgg gtcgtgctaa cgcggacccc gacaccggcc aggtcatcgg ccggtggtgg       480
     agaggctgag tccgactcgg acacagccgc gagcatggcg tccgctgggt cggggagccg       540
     ctggtgctcg gtggagtcgc tggagtacga ggggactgga cgtttttgga gagagggccg       600
     cggtcagaag cggccaatag aagaggtcag tcccacttcg aactctgcgg actcccccgc       660
     caagagcggg cgaaggaagg gtcgtggccg cccgcccact accggcgaat acgtcggcct       720
     ggcagcggcc aaacaagcct ttttaaaggc ttcagaggag gagataaaag cccgcgcgga       780
     ggccgaactt ctcgagtcta tcaccgaggc tcgcaggact cgctcggcac tgaccccaga       840
     agcttcgctg gagacgctgt cgtgccgcgc tatcgagtgt gacgacgata ccgcagctac       900
     cgtcataaga cggatcggag ctagccttga ggtagtagac aaggtggcta gtaaatccac       960
     caacctcaag ggtaccttcg ttcgcgcact gcatgatgcc gtaaaggcta tcaaggagga      1020
     cacgcagacg ctcgcgcaaa gaacgttgtc cgaagagacg cggcatctgc aggcggacaa      1080
     cgaccgcctg catgctgaga tggccagcct ccgaaaagag ctggctgaaa ttaaggagga      1140
     gatgaagaaa cggggctccg cccccacctc cacggacttg acgatcggac ccgccccagt      1200
     agcgcggccc tcctcacggg agatgctctc cgtggaggag atctgtagga cggtgatggt      1260
     ccaggtaggc gggatggtta atgcccgcct ggcctcactt gaagacagac tcctcccgga      1320
     gcgtaatttg cgtcctcctc ttgccttcga aagaagacaa gaggacacca cctacgcagc      1380
     tgcagcttct gggtcaaaag cggcaccaag tactggagca caaggagcgg ccaagaagaa      1440
     ggccccccgt ccgccgccgc cgccagccca gcctggcccc agcgggctta aacggaaaag      1500
     gaggaagaaa gcacctgcgg tgactacaga gcggtcggac tctgcccgcc cctccgtcaa      1560
     tccgccacag cgccctccgt ctcgccccct gaacccagac gctctcgacg agaactgggt      1620
     gaaggtgggt aagaacggaa gggccgtgaa ggagacggct aaaccagcac gacgaccgca      1680
     gccgaaaaga gctaacgggc gggtcttcag atcggcgtct gcgccactga agaccgcatt      1740
     gaagatgcct caaagctcgg cggtggtcgt cacgcttacc gaggaagcgc tgaagaaggg      1800
     cctcacttat agtggggtcc tcaaagaagc aaaggcgaaa gtagacctga aggagaccat      1860
     cggggtagag tcggtgcagt tccgacgggc ggtcaccggg gctaccatca tcagtatccc      1920
     cggcgccacc agtgccgcga aagcagatgt cctggcccaa aagctgcagg agatatacca      1980
     ggacaactcc atcagggtgt ccaggcccga aagatccgtg gacatcaaaa ttgatggcct      2040
     ggatgactcc acaacaccgg aggaagtcaa ggagtgcatc gttaaaaaag gagaatgcac      2100
     gccggaccaa attaggatcg gtacgctgcg gcccactaga tcgggcatgt atggagtctg      2160
     ggctcacgtc ccactaacgg cagcgaacaa gctcgccacg ggacggttcc tggtaggctg      2220
     ggtagtagcg agggtcagga tcggtacacc gaaacggctt tactgctacc gctgcttgca      2280
     gagcggccac gtggcgagca gctgtgatgc ggaggaccgc agccagctct gctttaaatg      2340
     tggccaggag ggacataaag cggcttcttg ctcggcgcaa gcgcattgcg ttgtgtgtgc      2400
     ggctgccggc aagaatgcca atcaccgctt gggaagcctt mgatgctcgg cacccaagaa      2460
     gacggcccca aggagagcgc ccgttgcsga acgmagcgcg cccccaccga gcggggaaca      2520
     gatggagata gcagaaaccg tacaggaata gtatgtcctt acggtttctc caagckaatc      2580
     tcaaccactg cgccagggcc caggacttgt tgatccagag cctggcgcag tggtcaataa      2640
     atscagcggt ggcttcggaa ccgtacacgg tcccggacag agacaattgg gtwggggacc      2700
     tagaacatct ggtcgcgata tacgcaggcg acaccccacc aatwgtctcc accaggagag      2760
     ggaaaggttg tgtaggcgtc aagcttgcca accttaccct catcggcgtw tacttctcgc      2820
     cwaaccgatc cttggccgag tttgaagagt tcctkgacga cstcaacwcc ttcgtccagt      2880
     ggggaaggcc gctcgacgtc gtcgtggccg gggaccttaa tgccaaatcc agagcatggg      2940
     ggtcctcsgt ctccgacagt cgcggcgagg tgttgctgga gtggacagcc cagcacaatc      3000
     tgacaccact gaatgtgggc tcggagcata cgtgcgtgcg cgcgcagggt ggttctgtcg      3060
     tggacgtcac gttcgccagt tccgccctag cgcgtcgcgt acagggctgg gaggtgttga      3120
     cggaagtgga gaccctgtcg gaccaccgat atattcggtg cgacattctc ccctcctctt      3180
     cgcccccctc tcggacatgt cgaaactccg ccactccccc ggggattggg ccgatgtggt      3240
     ccctgcgatc tcttgatcsa gagaccgccg agctggcckc aatcatcggg wcgtggtcac      3300
     ataaaatgga ggacwgcagc gtacakgatg gagtaaamtg gctggccgag acattggcgc      3360
     acatctccga ttgtgccatg tctaaggttc gaccttcacg gcggaggaat aaagtttatt      3420
     ggtggtcgga wgacctckca cggctgcgaa aggcatgtgt tgttgcccgc caccaataca      3480
     cccgatatcg gagacggcgw tccggatgga acgagaccga agagcggcgt ctctacgccg      3540
     agtaccaggg ggccaagaaa accctgcggg gtgagatcgc tgcctctaag gatcgggcct      3600
     gggaggagtt cttgggcagt ctggagttgg acccatgggg caggccgtac aagctcgtta      3660
     tgagtaagct gcgcccctgg gctcctccac ttactaccac tctagacscg gcacttctaa      3720
     catcggtagt gccggctctg ttccctccct gcgcccgcaa catcggagat gacccctccg      3780
     tctcgatacc gcccggttct gtcccggagg tatccgaggc ggagatgamc ttggctaaga      3840
     ctaagatgca gtgcaagcgc accgccccag gtcccgacgg gatacatggg agggtgcttg      3900
     cacttgcagt wcaacacgga cttgacgatc aactkaagac tctgctgacc aagtgtctgc      3960
     aggaaggaga gttcccaamc aagtggaaaa ckggaaggct ggtcctgctg aggaaacccg      4020
     ggaaaccgga gacctcccca tctgcctatc gsccgatagt gctgttagat gaggccggca      4080
     agctgttcga aaggataatt gccggtcgca tcacccaaca tctmacctca gcgggaccwg      4140
     acctgkccga ctcccagtac gggtttagga ggcatcgstc cacattggac gcgatcgcga      4200
     agctaagaga cgtctgtgca gaggcgacgt cccggggtgg ggtggcgata gcggtgtcac      4260
     ttgacatcgc maacgctttc aacaccctgc cctgggacag cataatggcg ggactcgaac      4320
     accatgatgt cccccactac ctacgtcgca tagtccacaa ctatctgcaa ggaaggagaa      4380
     tagtttttcc cacacgggac agctgggaga gccgcgmggt sgagtgcgga gttccacagg      4440
     ggtcggtctt agggccgctc ctgtggaaca ttggatacga ctcggtgctg cggggagcgt      4500
     tcgcccgcgg ggtgcagctt atctgctacg cggacgatac gcttgtcgta gccaccgggt      4560
     cggattacag agaggcgaaa ctgcgggcta ctgccggtgc ctcgcaggtt accgcwaaga      4620
     tccgcggact gggcctgcag gtcgccctcg agaaatcgga ggcgatctgc ttccaaggcc      4680
     cgcggaggag aggacmgcag atggggcagg agatwgtagt cggkggtact kcgatcccga      4740
     ttmgaagtac cctcaaatat ctggggctaa cgctggacgm aamgtggagt ttcaggccgc      4800
     actttgcggc ccttgcwcca aaactggagg cgacggctgc ggcwctaagc cgtattatgc      4860
     cgaatgttgg mgggcccagt ccgaagcgcc ggaaattgtt cgctggagtg ctgaggtcga      4920
     aggccctkta cggttgtccg atctgggccg acgacctctg ccagcaaaac cgggcaatgc      4980
     tccggcgctc scagcgsacm attaacatma gggtggcgag ggcataccgc acggtgtcgt      5040
     acgatgccgg gtgtgtcgtc gctgggctgc caccttggca cctggaggcg gccgccctag      5100
     cggatgtcta ctggcgcaga gccaggtttc gagaggaagg tggagagcct accccagaag      5160
     aagtgmgagt atggagaacc cacgcccasa acagggtgat ggacaaatgg ggagaggagt      5220
     tgwcagmagc ccgggccggg tcgtggacgc tggacgcgat ccgcccgagw ctcctggmtt      5280
     gggtgagcag gcggtgggga cacctttcct accggctggt gcagatkctg accggcmacg      5340
     gctgtttcgg caamtatctg caccaaatag ccggtaggga accaacacc                  5389
//
ID   R1-1_PXu    repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-255
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3080-3080 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 255 BP; 53 A; 76 C; 87 G; 39 T; 0 other;
     cctctggtga tggacacggg ggagtccatc accggcgact gagggctgcc tccccccgag        60
     agggagctgc ctcggcagct ggcgcagacg gggccgcgga cgagagcgaa agcgtgcccg       120
     tggtcccgtc ccgatgcgtt ggaggaacag aggggtttag tgggtatgcc tccgctatgg       180
     aggagaatcc cacataacta ccgcgtcccc cccggggcgc ggagtatgca taaagcattc       240
     ccctctgaaa aaaaa                                                        255
//
ID   R1-1_SIn    repbase;    DNA;    INV; 5091 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5091
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 473-473 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1000..3351
FT                 /product="R1-1_SIn_1p"
FT                 /translation="MAKRLLQTNLNHARAAQDILLQCLAERGGGLAIAADP
FT                 YRIPDDHPHWAGDTLGRVAIVSQHARDAPPMLPVESGEGFVLVEWGPIDVL
FT                 GCYFPPSLSRGEYEAALERAGEAIFRRSPRPIIVGGDFNAHAVAWGSPTTN
FT                 SRGRLTLEWAAGLDLALLNRGRVSTFVGGRGESXVDLTWASPGALGRVSAW
FT                 RVEAAPLGELTDHRLIEMEVASTPAEVRARTRRQXAERRWVLRKLDQEALE
FT                 VSLTVSTWADRGQDAGAEAEAEWLCDAMSRACDASMPRSRPRAKRATYWWS
FT                 EELAQLRRATVAARRAFTRARRRGVEAEVEETRAALRDARKALRVAIRRAK
FT                 AEAWEEFISGLTRDPWGRPYKMAVGKLRPWAPPLTETLDPRFLKRVVDQLF
FT                 PTRGRDIPARSGPPPGWSEELGVRDHELEEAFARIRNKGRARAPGPDGVFG
FT                 KVWVRAAPVVGEDLKRVLTQCFKEGVFPRRWKRARLVLLRKVGKPAEDPSA
FT                 YRPLCMLDDAGKIHERVIANRIIRHMSRIGPDLSPGQFGFREERSTIDAIQ
FT                 HVRALVGSMTGEGRVALAVSLDIANAFNTVPWGRVVAALVEYYGLPPYLVE
FT                 TVRDYFRDRTLEYTDKEGLQQRRDMTCGVPQGSVLGPLLWDAAYDVVLRTG
FT                 LPPGCHTVCYADDTLVVAGGTSWEEAVARANWAVACAVGAIEDLGLRVAPH
FT                 KTEAIFFHDGSRGPPPQASVLVGRTGXGWGPQKGPHPMFQRRRLSQEVEEG
FT                 PACPAEESGQASGGPLHRPQSSWAGPESRWGQP"
FT   CDS           3270..4556
FT                 /product="R1-1_SIn_2p"
FT                 /translation="GKWASQRGPPPQASVLVGRTRIQVGTTLKYLGLTLDG
FT                 RWGFVEHFDDIAPRLGERANALRGLMPNLRGPGIGARCAYMHAVMSGALYG
FT                 APVWCGAMXASSKIKKHLHSVQRLLALRVARAYRTSPNDAXMVLAGVPPAE
FT                 FLATARAALYARVKASRLRGNXIAPRTMASWRERARRRAIEXWRDHLVENP
FT                 PTVGTRVLEAVLPHLEEWVDRPWGGLSYRMTQVLTGHGCFGEYLCRIGKEP
FT                 TARCHHCEAEVDSAQHTLEHCPAWDELRRVLKDEVGEDLSLGAVVAKMVLR
FT                 ESCWKAVASFCEQVMSQKEAAETARERQRGGRPGGGGGRRRRRRPNPRGND
FT                 GRGGDPRPPRDRPGPPDGGGPRRKRRRIAGAATPLPPNHRGGGGERRRPPR
FT                 RQRGGRASRLPCRRPRIRDPKQGEAVRAEYGSRRG"
XX
SQ   Sequence 5091 BP; 925 A; 1639 C; 1821 G; 677 T; 29 other;
     gcggagccct cccggtcggc cgggtcggtc aaaatcaggc cgccgagcac cgcggcggtc        60
     tcggtgacct gcgccgaccg ggagagntac gccgaggtga tgaggctcgc cagaggccag       120
     ataaacctcg aggccctcgg gatcggngac ctgaggcctc gnagggccgt gaccggagcg       180
     ctgatcctgg aggtcagggg cggcggcaac gccgaaaaag ccgacgccct ggccaacgag       240
     ctccgcgagg tcacggccca cagggacgac gtnagaatcg cccgcccctc caagtcggtg       300
     gagatcagag tnacnggnct ggacgactcc gtaacgacgg aggaggtggc gagcgccgtg       360
     gggagcgtcg gtggctgctc cccgcaggac gtnaaagtgg gagggatccg ccggggcccc       420
     aacggactcg gcacctgctg gctgcgctgc cccgcgaggg ctggcaaagc agtgctggcc       480
     gccccgcgct tcagggtggg gtggtccagc tgcagggcga cgctgccgcc ctagcgcctg       540
     cgccaataaa gcgtgttgcc cggtgtgcct cgacaggggc aaaccggcgg atcacagagt       600
     gggcagcaag tcctgccact ccaccgccag gaagggagga gcgccgcggg ccaaagcggc       660
     gcaacccgcg gacaaaggcc cgcagcaaaa acggcggcga aggaggggcg aaggggggaa       720
     cgggcngcca acccccctcc ggctcctctc ccccctccgc cgcgacgacg gctccttcct       780
     cctccaagaa gaagaagaag ggggcggcca aatcacaccc ccctcccaag gacccctccc       840
     ccccaggtgg agagggcgag ctcggggaag cggccgcgac caagntctcg accgcccccg       900
     ggggcccctc ctcaggcgag aaagggcgcc gggaggcggc ggtgtcgccg acacccatag       960
     nagcgatgga ggtggaggag cctcggccat caaccagcaa tggctaagag gctcctccaa      1020
     acaaacctca atcacgccag ggctgcacag gacatcctgt tgcagtgcct ggcggaaaga      1080
     ggcggagggc tggctatcgc cgccgaccca tataggatcc ccgacgatca cccacattgg      1140
     gccggggata ccttgggcag ggtggcgata gtcagccagc acgcgcgcga cgccccgccg      1200
     atgctcccgg tggagtccgg cgagggcttc gtcctggtcg agtggggacc catcgacgtc      1260
     ctggggtgtt acttcccccc gagtctcagt cggggggagt acgaggcggc cctggagcgg      1320
     gcgggagagg ccatcttcag gcgctctccc agaccaatca tcgtgggagg ggactttaac      1380
     gctcacgcag tcgcgtgggg gtccccgacc acgaactcca gaggccgtct caccctagag      1440
     tgggcggcgg gactcgacct cgcgttgctn aaccgaggtc gggtcagcac cttcgtgggt      1500
     ggccgcggtg aatccatngt ggatctcacg tgggcctctc cgggcgccct cggcagggtc      1560
     agtgcctgga gagtggaggc cgctcccctc ggggagctaa ccgatcacag gttgatcgag      1620
     atggaggtgg cctccacacc cgcggaggtg cgagcgagaa cccgccgcca aanggcggag      1680
     aggagatggg tcctcagaaa gctcgaccag gaggccctcg aggtcagcct cacggtgtcn      1740
     acgtgggctg accgggggca ggacgccggg gccgaggcgg aggcggagtg gctctgcgac      1800
     gccatgtcgc gcgcgtgcga tgcctccatg ccccgcagcc ggccaagggc gaagcgcgct      1860
     acctactggt ggtccgagga gctcgcccaa ctnaggcggg cgacggtggc cgccaggagg      1920
     gcgtttacgc gcgcccgacg ccggggcgtg gaggcggagg tggaagaaac gagggcggcc      1980
     ctcagagacg ccagaaaggc gctgagggtc gccatccgcc gggcgaaggc tgaggcctgg      2040
     gaggagttca tctcgggcct cacgagggac ccatggggaa ggccatataa aatggcngtc      2100
     ggcaaactcc gcccatgggc ccctcccctc acggagacgt tggacccccg gttcctaaag      2160
     cgggtggtcg accagctgtt ccccacccgc gggagggaca taccggccag gtccggtccc      2220
     cctccgggtt ggtcggagga actgggggtc agagaccacg agctcgagga ggccttcgcc      2280
     cgaatcagaa ataagggcag agcccgcgcg cccggcccag acggagtctt tggcaaagtc      2340
     tgggtccggg ccgcaccggt ggtgggtgag gacctcaaaa gggtcctcac ccaatgtttc      2400
     aaagaaggcg tatttcccag gaggtggaag agggcccggc ttgtcctgct gaggaaagtg      2460
     ggcaagccag cggaggaccc ctccgcgtac aggcccctct gcatgctgga tgatgcgggc      2520
     aagatccacg aacgcgtgat cgccaaccgc atcatccggc atatgtcccg gataggtccc      2580
     gacctatccc ccggccagtt cggattccgc gaggagcgct caacgataga cgctattcag      2640
     cacgttcgcg ccctcgtggg gtccatgacg ggggagggaa gagtggcgtt ggcggtgtcg      2700
     ctagatatcg ccaacgcctt taacaccgtc ccgtggggca gggtagtggc ggccctggtc      2760
     gagtactacg gcctgccgcc ctacctcgtc gagacggtga gggactattt ccgggacaga      2820
     acgctggagt acaccgacaa ggaaggactc cagcagcgga gggacatgac gtgcggcgtt      2880
     ccgcaggggt cggttctcgg ccccctgcta tgggacgccg cgtacgacgt cgtcctccgc      2940
     acgggcctcc cccccggctg ccacacggtg tgctacgccg acgacacgtt agtggtggct      3000
     ggggggacct cctgggaaga ggcggtcgcg agggcgaact gggcggtggc gtgcgctgtc      3060
     ggcgcaatcg aggacttggg gctgagggtg gccccacaca aaacggaagc catcttcttc      3120
     cacgatggct cccgggggcc ccctccacag gcctcagtcc tcgtgggnag gaccggtngc      3180
     gggtggggac ctcaaaaggg tcctcaccca atgtttcaga gaaggcgtct ttcccaggag      3240
     gtggaagagg gcccggcttg tcctgctgag gaaagtgggc aagccagcgg gggccccctc      3300
     cacaggcctc agtcctcgtg ggcaggaccc gaatccaggt ggggacaacc ctgaagtacc      3360
     tggggttgac cctggacggc cggtggggct tcgtcgagca cttcgacgac attgccccac      3420
     ggttgggcga gagggccaat gccctcagag gtctnatgcc caacctccgg ggcccgggta      3480
     taggtgcgag atgcgcgtac atgcacgcag tcatgtccgg ggcgctatac ggcgccccgg      3540
     tctggtgcgg ggcgatgngg gccagcagca agattaagaa gcatttgcac tcngtgcaaa      3600
     ggctgctggc cctacgcgtt gcgcgcgcnt atcgcacctc tccnaacgac gccntaatgg      3660
     tcctggcggg agtgccgcca gcagagttcc tggcaacggc ccgagccgcc ctgtacgctc      3720
     gggtcaaagc ctcccgccta cggggcaacg ncatcgcccc gaggaccatg gcgtcgtgga      3780
     gagagagagc ccgtcggcgg gcgatcgagg natggcgaga ccacctcgtc gaaaacccgc      3840
     cgacagtggg cacccgggtt ctggaggccg tcctccccca cctggaggag tgggtggacc      3900
     gcccgtgggg cggtctatcc taccgnatga cgcaggtgct caccggacac ggttgtttcg      3960
     gtgagtacct gtgtcgaatc gggaaggagc cgacagcgcg ctgccaccac tgcgaggcgg      4020
     aggtggactc tgcgcagcac acgctggagc attgcccagc gtgggacgag ctgcgcagag      4080
     tcctcaaaga cgaagtcgga gaagacctct ccctgggggc cgtcgttgcc aagatggtcc      4140
     tcagggagag ttgctggaag gcggtcgcct ccttctgcga acaagttatg tcgcagaagg      4200
     aggcggccga gacggccaga gagaggcaga gaggaggaag acccgggggg ggcggcgggc      4260
     gacgacgacg tcgccgaccc aacccccgcg gaaatgatgg tagaggcggg gacccccgcc      4320
     ctccgcgaga tcgaccgggc ccccccgacg gcgggggtcc ccgcaggaag cggagaagga      4380
     tcgccggcgc tgcaaccccc ctccctccaa accatcgagg aggaggggga gagcgacggc      4440
     gacctccccg acgacaacgg ggaggacgag cctcccgcct cccctgccga aggccccgca      4500
     tacgggaccc gaagcagggc gaggcagtcc gcgccgagta cggctcccgg cggggctaac      4560
     tccccgtgac atcgggggga gggtccctcc ccagtcaggg aggggtaacc ctcccagccc      4620
     cgccggggcg aggggagtgg ggcaagtgcc ccctcccccc acgagagcan cagggagctc      4680
     gcgccgattg gcgcagctag gcccgggaac catccggcgg gggccggacc cccgggcctg      4740
     tacccccaac accaacaggg gaagaggcgg gggagggacg gtgtccctct cccccgacct      4800
     agggcagact aggccctaaa gccctgccag gggtgcctac cgccaggggg cgcctagcgc      4860
     taaggcgccc ctggcgagac gagtcggccg ccaactggcc gaccgggtcc ggggggctcc      4920
     ggaagtatgc tgcacgcgtt cccggagccc cccagttatg gaccagggca ggacacccgg      4980
     agaggtttta gtgggtaggc cctcgccgac gcgtcgccgg cgggggagag ccccacataa      5040
     ccgccaggcc tcccccgagg cctggggtat gcggtaacgc atttcctctc c               5091
//
ID   R1-1_TCas   repbase;    DNA;    INV; 5354 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 24.09, Created)
DT   17-SEP-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   An R1-type non-LTR retrotransposon family from Tribolium
DE   castaneum - consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5354
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1801-1801 (2019).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >97% identity,
CC   and likely 5'-truncated. Target site is unknown, but the 3'
CC   flanking sequence is often GATTCCTTCAGT.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           529..1704
FT                 /product="R1-1_TCas_1p"
FT                 /translation="MTEPEDIIKLKNMETISVSGMPTNPSIPEDKALRCIL
FT                 DEINRNFKVISEFICSSKDSLNKRVEASIAASGLHSNLNDISRLYTISVTN
FT                 NRTSNNLEEKIKDTIVNTLCEMKTGIPTYAQIATSKSANVSQPNTRPHKTT
FT                 QTFKVLVYPNNNARNIDTSEKTKIALTKTIKPKDLNFKVDKIIPIRNNGIL
FT                 IESPNKEIEQLVNSPLLENSNLNAKMPNKIFPKILIKDVANTIAQDTLSSC
FT                 LKENVEEQITPPENWLIRLNKFGAPKNNSTSWIAEIHPIVWKLLINKGKLY
FT                 CEETWTSYRIENFLRLVKCFNCQRHGHIAKNCQSENCCGYCSNNEHSSKDC
FT                 PNKTTTEAHRCINCIRAKFRETSHHTDNSDCPIYKSKLEQYINSIDYGD"
FT   CDS           1697..4780
FT                 /product="R1-1_TCas_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MGTNLKLLQANLQNSRSATIQTINYILEKNVQVSFLQ
FT                 EPYTYQKSPNLYEIPGLRNLKLIANKREKFLACIIINDDELGVVSIPNSTN
FT                 ILLASCSLLINPNQVLIAASSYFPPSREFVECLNELQQLTQLAGQLPLLLC
FT                 GDFNCRSELWHDKLSDNNSPAMENFIIANNMCIFNEPNNPPTFETTNGASY
FT                 IDLTIGSEFLLNKIQTWKTVDINTSDHRAITFEFNDNYNQIFPEVNASMDQ
FT                 KICNFNIKKAAPLLEQLSTDLINKYPILISQNKIDQCLEKFYFELDKIISS
FT                 CSRVKKTFKNRPTFWNEQIEALRRQYLKAKKDLYKNKNPDLKEALYISMSQ
FT                 VKQKFKDRIKLDKEKSWENFVKEDLAPNPWGVVYRVAAEKFKKTNLLGVFE
FT                 NDGETSLNPSDAAKRLLHSLLPDDNEENETLSQKITRQDFNTIEMTYRYNI
FT                 DEVTNTELEIIIKNLKKKAPGLDKIDGNLTKIMHPSLSNFLLHIYNSCLRA
FT                 SYFPKCWKMGNLVVIPKDSGGDPSDIKNYRPITLLNDLGKIFEKLIRTRLF
FT                 KSTDVFHADNQYGFCVGKSSTDALQSFKNQLQAYNQKCKYTAAVFFDISGA
FT                 FDNVWYPSIIKSLRQKGVSPHLIRIMKSYVSDRNVIYSYRGIVNRKNCTKG
FT                 CPQGSVLGPTLWNTILDEFLRKKIAPNTETIAYADDIVVITGANTRNEFRS
FT                 TIQTIVTAVCQFAGNQKLQVSSSKTKIMMFNSPKRVHNRDLAIKINNSTIQ
FT                 IVTEHKYLGILFDSKFNFQKHINNVCSKARTIMMALRRKIKLRWNISVADS
FT                 ISAIYNHAIIPIVTYGSEVWADRLNISKIKSKLTSLSGLASRCIAGCYASV
FT                 SNDAAHVLAGVPPLDLEAARINCCKLLKKDQNCNLLGFEIEKSDFDTYKHA
FT                 REYVAILVEDLWQERWDSSTKGRTTYRFRPIVQSGLRYSHSFAATQILTGH
FT                 GNFMSHLQRVGKSETDECAECGVRDDPIHRLLVCPLFDVPRRDIYRSVNSP
FT                 FLSLNWIIHLKSELLEPFTALP"
XX
SQ   Sequence 5354 BP; 1804 A; 1121 C; 943 G; 1485 T; 1 other;
     ttgtaaaatt tctcaaacct ttcctacact ggacttttct tgtcacatct tacttcacca        60
     ttttttgctc aacttcaaaa ccgaaaagca aggtttggga aagctttgat aaattatcct       120
     ttcaatattg tccatcttca atttaggaga cggcatactt tgacgataga aaagctggaa       180
     atataattct ttaatttagt ataattaatg aaaatattgt aaatacatgc caaattttgt       240
     aaccgacttt ccgcccaatt tggcggctgt ttttagaata aacgtgcctt cgggcaccta       300
     tttttttttt ttttttgata ccaaatttca gtctgcatcg agtgctgaga gcgtgcggac       360
     gtgttttcga gagcggcgtg taccagtgca gcgcgcagcg agacagcgct tcccctaccg       420
     cgccacgtct ggacccccgc ggcggcctgt ccgtttcttc gcgcttgcgc ggctctactg       480
     tctgcwttgt tgtttgttaa gtttctttgt atctaattta atgttacaat gactgaaccc       540
     gaagatataa ttaagttaaa aaacatggaa accattagtg tatccggcat gcccaccaat       600
     ccgtccatac ccgaagataa agccctgagg tgcatcttgg atgaaataaa tcgcaatttc       660
     aaggtaatct cggaatttat ttgctcatcg aaagactcac ttaataaaag agtcgaagcg       720
     agtattgcgg ccagtggttt acactctaac ctaaacgaca tctcacgact atacaccata       780
     tctgttacca ataatcgtac cagcaacaat ctagaagaaa aaatcaaaga tacaattgtc       840
     aataccctat gtgaaatgaa gacaggcata ccaacttatg cacagattgc tacctccaaa       900
     tcagcaaacg tttcccaacc aaacactcga ccccacaaaa ctacacaaac atttaaagtt       960
     ttggtatacc caaataacaa cgctagaaat attgatactt cagagaaaac aaaaattgcc      1020
     ttgactaaaa ctattaaacc aaaagattta aacttcaaag tggataaaat tattcccatc      1080
     cgaaataacg gcattttgat tgaatcacca aataaagaaa tcgaacaact agtaaatagt      1140
     cccctgctag aaaactcaaa tctcaacgct aaaatgccta acaaaatctt cccaaaaatc      1200
     cttattaaag atgtggccaa cacaattgcc caagatactt tgtctagctg cttaaaagaa      1260
     aatgtcgagg aacaaatcac tcccccagaa aactggttaa tacgtttaaa taaattcggc      1320
     gcccctaaaa ataacagcac ctcttggatt gcagaaattc acccgatagt ctggaaactt      1380
     cttatcaaca aaggcaagct atattgtgaa gagacctgga catcttacag aatcgaaaac      1440
     ttcctcaggc ttgtaaaatg cttcaactgt caacgacacg ggcatatagc aaaaaactgt      1500
     cagtcggaaa attgttgtgg gtactgttca aataatgaac acagctcaaa agattgtccg      1560
     aataaaacaa ccactgaggc tcacagatgc atcaactgta taagagctaa atttagggaa      1620
     acaagccatc atacagacaa ctctgactgc cctatttaca aatccaaact tgaacaatat      1680
     atcaacagca tcgactatgg ggactaacct gaaacttctt caagcaaatc tccaaaattc      1740
     aagaagtgct acaattcaaa cgattaacta tatcttggag aaaaatgttc aagtttcgtt      1800
     tctgcaggaa ccgtatacat atcagaaatc acccaacctt tacgagatac caggcctacg      1860
     caacttaaaa ctaattgcta ataaaagaga aaaatttcta gcttgtatta tcataaacga      1920
     tgatgagtta ggtgtagttt ctatcccaaa ctcgaccaat attttactag cttcttgttc      1980
     tttgttgata aatccaaacc aagttttgat agctgcttcg tcgtattttc ctccgtcaag      2040
     agaatttgtg gaatgcctaa atgaacttca acaactcacc caattggccg gacaactccc      2100
     actactgctc tgtggcgatt ttaattgtag gtcggagctt tggcacgaca aactttcaga      2160
     taataattct cctgcaatgg agaactttat aatcgctaac aatatgtgta tttttaacga      2220
     acctaataat ccacctactt ttgaaaccac aaacggcgca agctacatag atcttacaat      2280
     tggaagcgag ttcctcctaa acaagattca aacatggaaa acagtggaca tcaacacctc      2340
     cgatcataga gctattactt tcgaattcaa tgataattat aatcaaattt ttccggaagt      2400
     caatgcctcg atggatcaaa aaatctgtaa ctttaacatc aagaaagcag cacccttgtt      2460
     ggaacaatta tctacagatt taatcaataa atatcccatc ctaattagcc aaaataaaat      2520
     tgaccaatgc ctggaaaaat tctactttga actagataaa attattagct cgtgctctcg      2580
     cgtcaaaaag acttttaaga acagacccac gttttggaac gaacaaattg aggccctcag      2640
     aagacaatat cttaaggcca aaaaagacct ttacaaaaac aaaaaccctg atttaaaaga      2700
     agcactatac atttctatga gtcaagtaaa acaaaaattt aaagacagaa taaagctgga      2760
     taaagaaaaa tcctgggaaa attttgtgaa ggaagattta gcccctaacc cttggggggt      2820
     agtctacaga gttgctgccg aaaagttcaa aaaaacaaac ttgttgggtg tctttgaaaa      2880
     tgacggagaa actagtctaa acccatcgga tgctgctaaa cgacttctac attcactact      2940
     ccctgacgat aacgaagaaa acgaaactct gtcacaaaaa attactagac aagactttaa      3000
     cacaattgaa atgacgtaca gatacaatat agatgaggtg actaacacgg aacttgaaat      3060
     aataatcaaa aacctaaaaa agaaagcacc tggactggat aaaatcgacg gcaacctgac      3120
     caaaataatg caccctagtc tatctaattt tctcttacat atatacaact cctgcctccg      3180
     ggctagttac ttcccaaaat gctggaagat gggaaattta gtggtcatcc cgaaagactc      3240
     aggtggagat cctagtgaca taaaaaatta tcgacctatt acacttctta atgatttggg      3300
     aaaaattttt gaaaaattga tcagaacgag actctttaag agcacagacg tttttcacgc      3360
     tgacaatcaa tacggtttct gtgttggtaa atcgtccact gacgctctgc aatctttcaa      3420
     aaatcagctt caagcctata atcaaaagtg caaatacact gcggctgttt ttttcgatat      3480
     aagcggagcc ttcgacaatg tgtggtatcc ctcaataatt aaatctcttc gacagaaagg      3540
     tgtcagtcct cacttaatac gaataatgaa aagctacgtt tcagacagga atgtaatata      3600
     ctcttacaga ggtattgtca acagaaaaaa ctgcaccaag gggtgtccac agggctcggt      3660
     actaggcccc accttatgga acaccatttt ggacgaattt ctaaggaaaa aaattgcgcc      3720
     aaacactgag acaatcgcat atgctgatga tattgttgta attacgggag caaacacaag      3780
     aaatgaattt agatctacaa ttcaaactat agtgacagcg gtttgccaat ttgcaggaaa      3840
     tcaaaaactt caagtctcgt ctagtaagac aaaaatcatg atgtttaact cacctaaaag      3900
     agtacataac agagatttgg caattaaaat caacaactcg acgatacaaa tagttaccga      3960
     acacaaatac ctaggaatcc tttttgacag taaatttaat ttccaaaaac acattaataa      4020
     tgtgtgttct aaagctagaa caatcatgat ggcgctccga cgcaaaatca aacttcggtg      4080
     gaacatctct gttgcagact ctataagtgc tatttataat cacgcaataa ttcccatagt      4140
     gacgtacgga tcagaggttt gggcggatcg actaaatatt tctaaaatca aaagcaaact      4200
     tacctcactc tcagggctgg catcgaggtg cattgcaggc tgttatgctt cggtatctaa      4260
     cgacgctgcc catgtgctgg caggtgtgcc tccgctagac ctggaggcgg caagaataaa      4320
     ctgctgcaag ctacttaaaa aggaccaaaa ctgtaatctc ttgggttttg agatagaaaa      4380
     gagtgacttt gacacttaca aacatgcgag ggaatatgtg gcgattttgg tcgaagactt      4440
     gtggcaagaa agatgggact cctctaccaa aggaagaact acctatagat ttcgtccgat      4500
     agttcaatcg ggacttagat attcacactc cttcgctgca acccaaatcc taacgggtca      4560
     tggcaatttt atgtcccacc ttcaaagggt gggtaaaagt gagacggacg aatgcgcgga      4620
     atgtggagtt agagacgacc ctattcacag acttctggtt tgccccctct tcgatgtacc      4680
     aagacgtgac atctacagaa gtgtaaactc accttttctg tccctaaact ggataatcca      4740
     cctaaaatcg gaacttctgg aaccgttcac cgccttgccg taggtgctcg gctacagtgc      4800
     gttggtgcgg gagtttcatg gcctgttgct tcgtattcgg cccagtttgt gagtgcgggg      4860
     gtgacgaatg gcctgtctcg tttaaaatat aaaaattaaa ataatactaa taataaaaat      4920
     gtgtttgcta ctgaaaaacc ctgatgtcaa acatgtgtgg ttacaaatgt ttcctacgat      4980
     acaaacagac tctactacct atacttcttt tattctttgt tagtttgtaa cataccttcc      5040
     atttgttttt gatcaccgaa agatccatgg aggtggtttg ttacatcgtt atcctcctct      5100
     ctagtattta tataatctgg cccaaacgcc gaagatgtta aatgatgtaa ctttttgtta      5160
     gttcccctta ctgagataac acataaatta aaggtgatga atttgttagt aaccattaga      5220
     gacactagta aactttaaaa ttacctttta gatgtttcac taagaatatt gtttaatttg      5280
     cacttgtttc ttgtcgcgcc caatttggtg catttatgtt aataaaggcc cctttggggt      5340
     gttttttttt tttt                                                        5354
//
ID   R1-2B_AP    repbase;    DNA;    INV; 6115 BP.
XX
AC   Contig17211;
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 4)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2B_AP.
XX
NM   R1-2B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6115
RA   Jurka J.;
RT   "Non-LTR retrotransposons from pea aphid.";
RL   Repbase Reports 9(8), 1794-1794 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   The termini are approximate.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           875..2125
FT                 /product="R1-2B_AP_1p"
FT                 /translation="MKKLRCSPDPVPVAREAIKWIRYTIESSATKKTNLPA
FT                 EIQRAMFDKLKALDTAVHDMVISNLQLSSQLEEARRSAEICVGAAAAQFGT
FT                 ELRLRETAHEQTLEAVVARYAEREALRQQELEARGPHAERVVTQEAPVETF
FT                 AQVARTARPPTTTASRKPDRSVSRATKRNKALKEAKQVEHIPAFVIKSCGG
FT                 KDPKEVRNVVWKKVASQQVQPNCHSTIAKDGIIKPLNRETADVLKSLAKTS
FT                 TLIVEDSPRWPRVIFRGVQADARPDELQSAIISQNGHLNINEDTTEEILRP
FT                 IFKQGKRDMDTTNWVMEVNPKYYDRFEDATVYIGFMRCKAAAFEEVTQCHI
FT                 CLKYGHPASKCQGTEPKCTHCSRAGHKAVECPAAEGDPICANCRGKHSARD
FT                 KTCSVRTAYLLGIAKRTDYGVSQ"
FT   CDS           2125..5136
FT                 /product="R1-2B_AP_2p"
FT                 /translation="MSLRPLKIVQLNMERAAAVNDQLLAYCQETGVDIAMV
FT                 QEPYTNRGKLTGFETAPIRCYLSKGTRRRGAPNYLDHGAAIIVFNANLVIV
FT                 ARCVGTIENFVSIDLDCDLEGIVTLISGYFKYRVPTAVHVEALGPLHQDTA
FT                 QEVLITLDANAFSTRWHSRINDRRGETLVTWLDDQNLRIANKRSPHMTFDG
FT                 PRGRTNIDVTVCSDNIYGKLRDWTVIPDATASDHNLISFTMTLRAREFIHR
FT                 ITRFNLLRRNHITFVQEYEARATRRAATDRDLDTMATQAIEDITYAAERHA
FT                 SRSNRRRKTLPPWWSPELTDKRKEVRAAARHKATGGRQLYNEKRNEYTMLL
FT                 RRNKISSWRNFCTLEGVQPWGKLYRWMKGGHKSLTAIGLMRLPDGSVSNSI
FT                 DESVSILLNALIPNDPNTQVDARPVPEEGDMDPVTEEELKVHAWGLSPNRA
FT                 PGMDSITARMVRVLWPVLAPRLVNIVNECLKTGQFPNNWKAAQVIPILKGQ
FT                 DRDIALPMSYRPVSLLPVMGKIAEKVINSRLTEQIRPRLTGKQYGFTQGRS
FT                 TSDAIQRLLTWSNLCLEQYVITIFLDISGAFDNLTWPALQRDLGSLGASKH
FT                 MRHLIADYLRGRTATMTIGGVAKTVRVTKGCPQGSILGPVLWNVTVEALLR
FT                 TDFPGHVNIQAYADDIAIYVSGPNRRTLIERSTTALLPVLAWARDRGLTFS
FT                 AQKSVAMITKGALVPGFTLTFGDERIVSVDNVRYLGIRLDQKKSFTPHFEA
FT                 LKNSSETLFSRLRGTIGAGWGLKRENILILYRGVFLPKIAYGAQFWAHKLK
FT                 TLQTIKKFGSIQRRALLGMTSAYSTTSTDALQVLAGVPPLDIEIKWMVNKA
FT                 VVALLPAHLRHDTMTAMRETLLDEWQIRWTNSLKGRWTFRFFPDIRARLLL
FT                 PLSLGHEVVQFLSGHGNFRAKLATFNLQPVSMCACGMGDEYAEHVLFNCFL
FT                 DADHRAVLELAVHRSGHLWPCNPATLVSTAKLYAALVKFSKVAAYMERP"
XX
SQ   Sequence 6115 BP; 1612 A; 1545 C; 1695 G; 1263 T; 0 other;
     gtgtccactt ttctgttgag tcgaattgac gtgtgttgct cgtgttaatc ttgctccgag        60
     gggcgccctc tagcgggttc tcattgcaga cgtcctaagt ccctgaatcg tcaggaattt       120
     tttgcgtttc aagtgcatac ttgtgtataa aaagtgcgcg aacagaccgg tgtcgatttt       180
     gagtcggtct gcttaaaacc tcccccgtgg ggtccatttt tgtgtaatcc cataagcaat       240
     acacggccgc ccgccggtat tgccgagcga tttttggatt ttagtcagct acgagaccag       300
     gtgtcaagag cctgacgagg tacgttcgga atcgttatta cgtaattcag acttaactta       360
     agtcccccac caagtggctg gtataggtgg tatactaccc cctccttaaa ttttcaagtg       420
     gccataactc ctagggttta aggggcacag cccctggacc aaggggaaac ccattttctg       480
     ggcgaaccgc atattctccc accgttggga actaagcccc cacccccccc cgattttgag       540
     ttaagcataa ctccgcggag aaacgccgca gaaccccagg ggcaacgact agtggtaccc       600
     ctagtgcagg gctacagttt tccgtgatag ggaacggggc aaccccccac cccccatttt       660
     ggtttttgac ttttaggtca gatacccatc caggaggcct ctagcacccg tacccccgcg       720
     gggaaactcg gggttttaaa tcccccaccc cccagaggga agaactgtga acaatggacg       780
     agaagattcc cagccagggg agcttccaca accagttccg ggcactagcc aacaggttct       840
     gaggacccca ccgtcggcag gctcctcgcc tggaatgaag aaactcagat gctcaccaga       900
     cccagtgccg gttgcccgag aggccatcaa atggatccgc tatactatcg agtcctccgc       960
     cacaaaaaag acgaacctac cagccgagat acaacgagct atgtttgata agctaaaggc      1020
     cctggacaca gctgtgcatg atatggttat cagcaatcta cagctctcta gtcaactaga      1080
     agaggctagg agatcggccg agatttgcgt tggagctgcc gcagcgcagt ttggcacgga      1140
     gctcaggcta agggagaccg ctcacgaaca aacccttgag gccgttgttg ccaggtatgc      1200
     ggagagggag gcattaaggc aacaggagtt agaggcgagg ggccctcacg ctgagcgtgt      1260
     cgtcacgcag gaagcacctg tggagacctt tgcacaggtg gcaaggaccg ccaggccgcc      1320
     cacaaccaca gccagccgca aaccggaccg ctcggtatcc agagccacaa aaagaaacaa      1380
     ggcgctcaag gaggcaaagc aagtcgagca catcccggca ttcgttataa aatcgtgcgg      1440
     agggaaggac cctaaggagg taagaaatgt ggtatggaag aaggtggcca gtcaacaggt      1500
     acagccaaat tgccactcaa caattgccaa ggatggcatc atcaagccct taaaccgaga      1560
     gacagcggat gtgttgaaat ctttggcaaa gacttcaaca ctcatcgtgg aagacagccc      1620
     ccgatggccc agggttatat tcaggggagt ccaagcagac gccaggccag atgaacttca      1680
     gagtgcgatc ataagccaaa acggccactt gaacatcaat gaggatacga cagaggagat      1740
     ccttaggcct atcttcaaac agggcaaaag agacatggat accacaaact gggttatgga      1800
     ggtaaatccg aaatactacg acaggtttga ggacgccacg gtatacatag gttttatgag      1860
     gtgcaaggcc gcagcatttg aggaggtcac acaatgccac atttgtttga agtacgggca      1920
     cccggcttcg aaatgtcaag ggaccgagcc gaagtgtacg cactgctcca gggccggcca      1980
     caaggcagtg gaatgtcctg ccgcagaagg agaccctatc tgcgcgaatt gtagaggtaa      2040
     gcacagcgcc cgcgataaaa cctgctcggt gaggaccgca taccttctgg gaattgcgaa      2100
     gaggactgac tacggggtct cgcaatgagc ctcagacctc tcaagatagt gcaacttaat      2160
     atggagagag ctgcggcggt caatgaccaa ctcttggcct attgccaaga aacgggtgtg      2220
     gacatagcca tggttcaaga accgtacaca aacaggggca aactgacggg ttttgagaca      2280
     gccccgataa ggtgctacct ctcgaagggt actcgacgaa gaggtgcgcc caattacttg      2340
     gatcatggcg ccgcaataat tgtttttaat gcaaacctgg tgattgttgc cagatgtgtg      2400
     ggaactatag aaaacttcgt ctccatagat ctcgattgtg acttagaagg cattgtgacc      2460
     ctaatcagcg gatattttaa gtaccgagtc cctacagctg tgcatgttga agcattggga      2520
     ccccttcacc aggatacagc acaggaggta ctcatcacgc ttgatgccaa tgcgttttca      2580
     acccgatggc acagcagaat aaacgaccga agaggggaaa ctttggtaac gtggcttgac      2640
     gaccaaaatc tacgcattgc aaataagcgc agtccacaca tgaccttcga tggaccccga      2700
     ggtcgtacca atattgatgt cacagtctgc agcgacaaca tctacgggaa gctcagggac      2760
     tggacggtta tcccagatgc aacggccagt gatcacaatc taatatcctt taccatgacc      2820
     ctgagagcaa gggaattcat tcaccgtata actcgtttca acctcctgag gagaaaccac      2880
     attaccttcg tacaggaata tgaagctagg gcaacacgaa gagccgcaac tgatcgtgat      2940
     ttggatacca tggctaccca ggcaatcgag gacatcacat acgcagcaga gcggcatgcc      3000
     tctaggagta accgtagaag aaaaacacta ccaccctggt ggtctccgga gctgactgac      3060
     aagagaaagg aggtacgtgc agcagcaaga cataaagcca ccggaggacg acaactatat      3120
     aatgagaaac gtaatgagta cacaatgctg ctgagaagga acaaaatctc ttcgtggagg      3180
     aacttctgca cacttgaagg ggttcagcct tggggcaagc tgtatcgctg gatgaagggc      3240
     ggacacaagt ccctcaccgc tatagggtta atgaggctcc cagatggttc agtttcgaac      3300
     agcatcgatg aatcagtgtc catcctgctt aacgccctga ttccgaacga cccaaacacc      3360
     caggtggatg cccgcccagt gcccgaagaa ggggacatgg atccggttac tgaggaggaa      3420
     ctcaaggtcc acgcatgggg cctgtcgcct aacagagctc cggggatgga tagtataaca      3480
     gccagaatgg tcagagttct ctggccggtg ttagccccga gacttgttaa catcgtaaat      3540
     gagtgcctga aaactggaca attcccaaac aactggaagg cggctcaggt aataccgata      3600
     ttaaagggac aagacaggga catagcatta ccaatgtcat atagaccagt gagcctgttg      3660
     cctgtaatgg ggaaaatagc ggagaaggtt attaactcca ggctgaccga gcagataagg      3720
     ccaagactaa cagggaagca atacggtttc acccaaggcc gttcaacgtc agatgcgatc      3780
     caaagactgt taacatggag caatctctgt ttggaacagt atgtcatcac tatatttctc      3840
     gatatatccg gtgcgtttga caacctaacg tggccggcgt tacagcgcga cctgggtagc      3900
     ttgggtgcca gcaaacacat gagacatctc atcgccgact atctgagagg tcgaacggcc      3960
     acgatgacca taggaggagt tgccaaaacg gtaagggtaa cgaaggggtg tccacaaggc      4020
     tcaattctgg gtccagtgct gtggaatgtg acggtggaag cgttgctccg aaccgatttc      4080
     ccgggccatg taaacatcca agcatatgca gatgacattg ccatatatgt atcagggcca      4140
     aacaggcgaa cattaataga gaggtcaaca acagcgctac taccagtctt agcctgggcc      4200
     cgggataggg ggctgacttt ctctgcccaa aaatcagtgg caatgatcac taaaggtgca      4260
     ctcgttccgg gctttacact caccttcggt gacgagagaa ttgtttctgt ggataacgtc      4320
     agatacctgg gcatacgtct ggaccagaaa aaatcgttta cgccacattt cgaggcactg      4380
     aaaaattcgt ctgagactct gttctcaagg ctgcgaggaa ccattggcgc aggatgggga      4440
     cttaagaggg aaaacatatt gattctttat cgtggtgtat tcctgccaaa gattgcttac      4500
     ggggcgcagt tctgggcaca caaattaaag acactccaga caatcaaaaa gtttgggtcc      4560
     atacaaagaa gagcactgct tggcatgacc agtgcatata gcaccacttc gacggatgca      4620
     ttacaggtgc tcgcgggagt accaccgctg gatattgaaa ttaaatggat ggtgaacaag      4680
     gccgtggtcg ctctcctccc agcacatttg aggcacgata caatgacagc catgagagaa      4740
     accttattgg acgagtggca aataagatgg acgaactctt taaagggcag gtggaccttt      4800
     cggttcttcc ccgacatcag agctaggcta ctgctccccc tttccttggg acatgaagtc      4860
     gtgcagtttt tgtctggaca tgggaatttc agggccaaac tcgcgacctt caacttgcaa      4920
     ccggtttcga tgtgtgcatg cggcatggga gatgagtacg cggaacatgt gttgttcaac      4980
     tgctttctag atgctgatca cagggcagtc ctggaacttg cggtacacag atcaggtcac      5040
     ctatggccgt gtaacccagc aacactggtt tctacagcca agctatatgc ggcgcttgtg      5100
     aagttttcga aagtagccgc ttacatggaa cgcccgtgag acggagaatt tgcaggacgg      5160
     gcaagacact ctgcgcgcca gagtgccaaa ccccgcatga gttctgacga gtgtcaagga      5220
     gagagaaggc agaagcggtt cacatgtggg gccgtcctga ggggacactc gtgcgtcggg      5280
     gacgcgggcg gcgctgacgc tgacaacagt ggttcgtgga caaccggagg cgccgcggtg      5340
     gctgaaagct taggtgagta ggccacacct acatcgggcc ctgtgtctgg ggccatggaa      5400
     gaatacagac acagtgtacc ccgcttgtcg tacgaggcga ctaaagggat ggggttgcga      5460
     cctacgcatc gcgggtgagt gcccgcggta aaggcctacc aagagcctgc tgagccagcg      5520
     aatcctggga gatcgggcgt gccctgtcga acatcctacc gatgatgacc tacctaacgg      5580
     gggtgagatc ggtgccacgg gaaggggggg agccccactg ccccgagtta tgcccgggtc      5640
     agtgcccctc tactttgggc gcgtgtcggc ttgccggcgg gcgcccagag ccggattggt      5700
     ttcgtggtgg ctgtagcggg agctactgat atggttcgag ccaaagctgg taggcgaagg      5760
     tcttcagtga acggctgtac cgacgcgggg atgcgagtcc ctgggtcgtt gcagtttctc      5820
     ctggatactc agctggtcta ccgttggata aaatcagcgg aggttttctg taaccaaaaa      5880
     cgggaagtga tgggataggt cacgacctca ccagaggtgg cacacggtgg ctccagacct      5940
     gtgccgtctg gtacggtgct tcggcaccgg tgctggtggt ccttagacga cacgctcgcg      6000
     gcgtgggcgc ttcggcgccc ccgcacgggt gaacctctat ggctcgtaac aagcgcacag      6060
     cgcttataca cggtccatag ttgtagccgc aaggcaccaa aaccgaggat accct           6115
//
ID   R1-2B_DK    repbase;    DNA;    INV; 4037 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DK;
KW   R1-2B_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4037
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1356-1356 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Fragment. The consensus is ~77%
CC   identical to that of R1-2_DK.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1470..4034
FT                 /product="R1-2B_DK_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRAAQDLLTQTVREVAADVAILSEPYR
FT                 VSVGGEWAKDRSGKAALWLCGGRRLRMSNILAADGFVRAEVGGYCIYSCYL
FT                 APSLPLEVFSRILDDLSSDLRGRPKVIVGGDFNAWAQEWGSVSTNARGRAV
FT                 LEAFASTDVVLLNDGERHTFVRAGAASIIDLTYVSGAISQTARWGICDAYT
FT                 GSDHEAILCSVGGPAEDTRAAPRPSKAYRPDTLCTQAFTNALDGMAAEVTG
FT                 GANEMANRIAATLEHACDQSMRQRGSFRGNHRPVFWWSDAIADLRATCLRA
FT                 RRQLTRARGTSRVAERSEVYRTARKALKTAIRDAKRDRFLQLCDEAEDDPW
FT                 GGAYRMVVKGLRAGSTAPSDPEALDGIVRALFPTGSPVTMEPSAERLPNDA
FT                 CEVSEAEVIQMGNSVPPKKAPGPDAVPNRALKLSIALHPRAFATLYSKCLE
FT                 EGTFPERWKRQKLLLLAKPGKPQGEPSSYRPICLTDTTGKVFERIISARLT
FT                 AAIEEAGGLSPNQFGFRKGKSTLDAIEAVTGIAESAIAGKRWKGGSKSYCL
FT                 VVTLDIRNAFNTANWNRTLESLAALNIPGYLMRIARSYFSERVLTVATDMG
FT                 SRAYEVSAGVPQGSVLGPLLWNTMYDGVLRLPMPSGTTVVGFADDVAVVVV
FT                 AKERTAAEAMANDAIRSIESWLASAGLELAAHKTEAVLISSRKIVETAEIR
FT                 VGGAVIRSQRAIKYLGVLIDTRLSFKEHLEYAQKKASRTAGSLSRILLNTR
FT                 GPKQITRKLLTSVVTSQMLYAAPVWAAAAETKSYMRGAESTYRLCAVRVAS
FT                 AFRTVSDDAALVIAGLVPLRELVREKAELRNALRGHHGPDRAAKSEAKIAA
FT                 RG"
XX
SQ   Sequence 4037 BP; 904 A; 1161 C; 1346 G; 609 T; 17 other;
     gtgtgtgwag tcgccgggca cggacgcgcc gcggcggtgc tcccccsacg wacgcgtggt        60
     gtgggggttg tggcagggcc ccccgcaaaa tckgatgckg ascggcckcg cgaagcggct       120
     gagaktgctc acctgcggcg tcacmcccgt ggtgtccgcg gatgatccag ggagcccgat       180
     cttccaawcc kcwgakctgg gccagcggcg ggagcggtga gaacttctct ctckcggtaa       240
     atgtggctgc ccccgcagca tgttggcgag atcagctgtg accgaagaga agcaaagccg       300
     cccaggagga gaccacccct ggcgctgagg ttgagcagga gacgacgctt actcgcaacg       360
     actgcgtcac caagctggga aagctgttcg acggactcca cagcctggtg catgagaagc       420
     aggtgcgcca catcaacatt acaatgaagg cgatgcatag cggagatgcg gaagctcaag       480
     tccggcatcg agcagtcaac agtggagccc gagagaatga gcgaggcccc ggagagcgta       540
     tgctgcggaa tgctcccaga tcctaccagc tcgggaagag cctgttgaaa gcaaggcact       600
     gcagacggcg gtagtgccga ggaaagaccg ggcagtccag actgacccgt ggagaagggt       660
     cagccaacaa gacggcatag ccggggctag tgacgtcccc aggcagaggc gagcccctcc       720
     agcccaggcc acagcccccg cagcgccgag gaacggtgcc agaaaggccg gccggtggaa       780
     gcccagggaa gagctacagc gagatccggc cctgtcacga gagggaggac agacagctga       840
     cgatctcgga ggggctgtca caaggtgcgt cggacggcta gggggaatct actcctcgag       900
     gtagccagag ggagcacaga gagcgctgag tccatgaggg acagcatctc cagggtcctg       960
     ggcgacgctg cggaagtgcg agccctaacg gaggagtcga aggtctgcgt cttcgagata      1020
     cgcaacctcg acgcgatcac gacggagagg gagatccgta ccgccctcgc tgagcagtac      1080
     cagctaagcg acggagcagt gaggatacga agcctccgcc ccgggtacgg ggaatctaaa      1140
     acggcggtct tcagcctgcc atgctcgatg gcgaaggaag tcagacggcg cggcgaggtc      1200
     cgcataggtt ggaccaggtg cagagtgcgg gagcgcgaag gccctcctcg ctgcttcaga      1260
     tgcctggagc ttgggcacat cgccatcagg tgtaagagcc cggtggacaa gagcggctgc      1320
     tgcatcaagt gcggcgaagc aggccacaag gccgttgcct gcaaaaagga gccagtgatc      1380
     cttccagcga gctccggaga ggccgacgtt cgacccggca gcaaaagccg ccaggccgga      1440
     aaaggcggta ccgacactcc aaggaccgta tgcagttgat tcagctcaac ctgaatcact      1500
     gcagagcggc gcaggacctg ctgacgcaga cagtgcgcga ggtagcggcg gatgtggcca      1560
     tactcagcga gccatacagg gtgagcgtgg gaggagagtg ggccaaggac cgctctggca      1620
     aggcggccct ttggctctgc ggaggcaggc gactgcgtat gtccaacatc ctggcwgcag      1680
     acggattcgt gcgggcggaa gttggcggct actgcatcta tagctgctac ttggcgccta      1740
     gtctcccact agaggtgttc agtaggatcc tggacgacct aagctccgat cttcgtggga      1800
     ggcccaaagt tatagtcgga ggagacttca acgcctgggc ccaggaatgg ggatccgtct      1860
     cgaccaacgc cagaggacgc gcggtgctcg aggcgtttgc atcgacagac gtcgtcctcc      1920
     ttaacgacgg tgagcggcat acgttcgtca gagcaggagc cgcctccatc atcgacctga      1980
     cgtatgtgag cggagcaatt tcccaaaccg ctagatgggg aatctgcgac gcatacaccg      2040
     ggagcgacca cgaggctatc ctatgctcag tgggaggtcc cgcggaagat acccgtgcag      2100
     caccgcggcc cagcaaagcc taccggccag acacgctgtg cacgcaggcg ttcacaaacg      2160
     cgctggacgg catggcggcc gaagtgacgg gtggagccaa cgagatggcg aaccgcatcg      2220
     cagcaaccct ggagcacgcc tgcgaccaga gtatgcgcca gagaggctcg tttcgaggaa      2280
     accacaggcc agtgttctgg tggagcgacg cgatcgccga cctcagggcc acctgccttc      2340
     gagcccgtag gcagctgact cgtgcacgcg gaacctcacg agtcgctgag cgtagcgagg      2400
     tctacaggac ggcgagaaag gccctcaaga cggccataag ggacgccaag agggaccgtt      2460
     tcctgcaact ctgcgacgag gcggaggacg acccctgggg cggagcgtat aggatggtag      2520
     tcaaagggct gagagccggc agtacagctc catcggaccc cgaagccttg gacggcatcg      2580
     tgcgggcgct tttcccgaca ggatctccgg tgaccatgga gcccagtgcg gagcgtctcc      2640
     caaacgacgc ctgcgaagtc tcggaagcgg aggtgatcca gatgggtaat agcgtgccsc      2700
     ccaagaaggc gccggggccg gacgctgtac ccaacagagc gttgaagctg tccatcgcct      2760
     tacacccgag ggcgttcgcc accctgtact ccaagtgctt ggaggagggg acctttccgg      2820
     agaggtggaa gaggcagaag ctactgctac tcgccaagcc gggcaagccg cagggggagc      2880
     catcctcgta taggcccatc tgcctcaccg acaccaccgg aaaggtattc gagcggatca      2940
     tttcagccag actgactgcc gccatcgagg aggccggtgg tctctcccca aaccagtttg      3000
     ggttcaggaa ggggaagtca acgctggacg ccatcgaggc ggtgacggga atagccgaat      3060
     cggccatcgc cggtaagagg tggaaaggcg gctccaaaag ctactgtcta gtggtaacgc      3120
     tagacataag gaacgccttc aacaccgcga actggaaccg aacgttggag tccctcgccg      3180
     ccctgaatat cccagggtac ctcatgagga tagcaaggag ctacttcagt gagagagtgc      3240
     tcacagtggc cacggatatg ggttccagag catatgaagt ctccgccgga gtccctcagg      3300
     gctccgtgct gggacccctg ctctggaata ccatgtacga cggcgtcctg cggctcccaa      3360
     tgcccagtgg cacgaccgtt gtgggcttcg ctgacgacgt agcggtggtc gtagtcgcca      3420
     aggagcgcac cgcagcagaa gctatggcaa acgatgcgat cagatcgatc gaatcgtggc      3480
     tcgcgagtgc cggcctggag ctagcggcac acaagacgga ggcagtcctg atatcgagcc      3540
     ggaagatcgt ggaaacggcc gagatccggg twggcggagc cgtgattaga tcgcagaggg      3600
     caataaaata cctcggcgtt ctgatcgaca cccggctatc gtttaaggag cacttggagt      3660
     acgcccagaa gaaggccagc aggacggcag gaagcctctc gcggatactc cttaacacca      3720
     gaggacctaa gcagatcacc aggaagctgc tgactagcgt cgtgacctcc cagatgctgt      3780
     acgcggcacc ggtgtgggct gcagccgccg agaccaagtc ctacatgcgg ggagcggagt      3840
     ctacatacag actatgcgct gtccgagtgg caagcgcatt caggacggtc tcggacgacg      3900
     ccgcgcttgt gatagcggga ttggtccctc tgagggagtt ggtccgcgag aaggccgagc      3960
     tgcgcaacgc gctccgcggg caccatggac ctgatcgcgc cgcgaagtcc gaggctaaaa      4020
     tagcggctag aggaaag                                                     4037
//
ID   R1-2B_PPo   repbase;    DNA;    INV; 89 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_PPo;
KW   R1-2B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-89
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3131-3131 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated. ~81% identical to
CC   R1-2_PPo.
XX
SQ   Sequence 89 BP; 31 A; 27 C; 20 G; 11 T; 0 other;
     gagttcccac ccgcacccaa cgtccctttc ccacaaatat gttaggggga acgagagggc        60
     ggcatagcgc cgcccaaaaa aaaaaaaaa                                          89
//
ID   R1-2C_PPo   repbase;    DNA;    INV; 76 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_PPo;
KW   R1-2C_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-76
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3132-3132 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 5'-truncated. ~79% identical to
CC   R1-2_PPo.
XX
SQ   Sequence 76 BP; 29 A; 19 C; 19 G; 9 T; 0 other;
     ataaacgtac ccaaaatccc tgatccacat gtcaggggta cgagagggcg gcatggggcc        60
     gcccaaaaaa aaaaaa                                                        76
//
ID   R1-2_AP     repbase;    DNA;    INV; 6087 BP.
XX
AC   Contig3122;
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 4)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_AP.
XX
NM   R1-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6087
RA   Jurka J.;
RT   "Non-LTR retrotransposons from pea aphid.";
RL   Repbase Reports 9(8), 1795-1795 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   As is other R1 elements, it is inserted into 28S rRNA genes. TSDs
CC   are TGTCCCTATCTACT.
XX
FH   Key           Location/Qualifiers
FT   CDS           764..2125
FT                 /product="R1-2_AP_1p"
FT                 /translation="MSTHSLEDITQEPQSPLPGTSQQQMRSPPSPGDSPQT
FT                 KKPKGLPTPGPVARVTIKWIRHTLDLASTRKTAMAVDVTRNLFSKLDELDT
FT                 AVIDLVIENLQLRSQVEEARRSAEICVGAAAAQFGTELRLREAAHEQTLEA
FT                 VVTRYAEKEAIRSLETAPVRQNVTEEQMCTEEPPTFAVVTRRKQSRTVDRI
FT                 ADRSRSRATTRNKRIRETRQAEHLPSFILNESPGKSNTEVRDLIWNQVVAK
FT                 NSRPKCHTITTKTGKTILKPSDKETVDALKYISKVSTLLKEDSLRWPRVII
FT                 RGVSSDMKFDHQIQQCIIAQNPELGFDDNEDEMVIKPVFKSGPRDRSTTNW
FT                 IVEVNPKHFEKFENTTIFLGFMRCRVSAYEEVTQCHLCLRYGHPASKCLEK
FT                 DCVCAHCGRKAHKAADCPAAEADPVCINCRGKHSARDKTCSARTAFLVNQV
FT                 RRTDYGKSQ"
FT   CDS           join(2062..2994,2998..3330,3278..5230)
FT                 /product="R1-2_AP_2p"
FT                 /translation="MLCKDGFLGQPGQEDRLWEVAMSVHPPLKIVQLNMGR
FT                 AAAVNDQLLAYCQESGVDIAMVQEPYTNRGKLTGFETAPIRGYLSKGTRRR
FT                 GAPNYVDYGAAIIVFNANLVIATRSVGTTENFVSIDLDCDADGTVTLISGY
FT                 FKYRVPTEVHVDVRGPLFQTAAQEVLITLDANAFSTRWFSRINDRRGKALV
FT                 TWLDDHNLNIANKRSPHNTFDGPRGRTNIDITVCSDYLLGKIREWAVIPAA
FT                 TSSDHNLISFTVDLSLREFIHRSIRLNLLRRNYNTFVQEYEARTTQRTEIA
FT                 LDLDTMATQVFEDVTYSANHATRSTRKRKVTPPWWSPELTNKRKEVRAAAR
FT                 HKADGGRQHYNSIRNEYTMLLRRNKVTSWKNFCTLEGVQPWGKLYRWMKGG
FT                 NKPLTAIGLMRLPDRRIGVHAAKCADPEGSPIDESVSTLLNVLIPNDPTTQ
FT                 EDARPALAEGDLDPVTEEELKVHAWGLSPNRAPGTDSITARMIRVLWPAIA
FT                 PRLVTIVNESLRTGRFPNSWKMAQVIPILKEQDRDTALPKSFRPVSLLPVM
FT                 GKITEKAINSRLSEQIRPRLSGKQFGFTPGRSTLDAIQSLLTWINLSAEQH
FT                 VITIFLDISGAFDNLLWPALQRDLCSLGASLHMRHLIADYLRGRTATMTIG
FT                 GVSKSVRVMKGCPQGSILGPVLWNVTVEPLLQTDFPDYVNIQAYADDIAIS
FT                 VLGPNRRTLIERAEATLLPALAWAHERGLTFSAQKSVAMITKGTLVPGFTL
FT                 SFGDERIVSADNGRYLGIRLDQKKSFMPHFEALKSSSETLFSRLRGTIGAG
FT                 WGLRRENIMILYRGVFVPKIAYGSQFWVHKIKTRQMIRNFGSIQRRALLGM
FT                 TSAYNTNSTDALQVIAGVPPLDIEIQWLVQKAEVALLPAQLRNETLKAKRE
FT                 ALLDEWQTRWSNSIKGRWTFRFFPDVRERLLLPLSLGHEVVQFMSGHGNSR
FT                 AKLASFNLQPDSRCACGMGEEFVDHVLYNCTLHAEHRARGTQSRSPMAVRS
FT                 GHVGFHIQALYGASKILQNGCLHGMPMRWKNTRTDKTLWAPECQTPHVFWT
FT                 SVKARDGRSGSHVGPS"
XX
SQ   Sequence 6087 BP; 1599 A; 1580 C; 1673 G; 1235 T; 0 other;
     cagtgtccac tttacagtgg agcctgtaag acgtgtgttg atacagttag tcgagctccg        60
     aggggcgccc tctagcggat ttctacggaa catgcgctaa gtcagtgagt tctcaaaaat       120
     tttttgtgtt tccagttcga gccagtgtat aaaaagttcg cgaacagacc ggtgccggtt       180
     ttgagtcggt ctgtccaaaa ccccctctgt ggggaccgtt tttgtgtctg cccataaggt       240
     taacacggcc gcccgccggt attgccgagc gatttttggt ttgtcgtcag ccacgagacc       300
     aggcatcaag agcctgacga ggtacgtttg gcagttcact tacgtaataa gacttatatt       360
     taagtgtccc ctcctagggc tggtataggt agtataccac ccccactcca acactttggg       420
     tggccataac tccgtgggtt ttgggccgca agaccccgga ccaaggggga acctattttt       480
     tgggctcacc attgaatctc ccgcattcgg gaacaaagcc cccacccccc cccccctgtt       540
     ttgagttaag tataactccg cgggaaatcg ccgtaagagc ctagaggcaa cgggcatcgg       600
     ttaccctagg ttggggccgc aatttgaccc aatcgggaac ggggcacctt tccacccccc       660
     attttggatt ttcgtttttg agcaaaaatc tgtcagttag acgaccagca ccaatacccc       720
     cgaggggaaa ctcggggttt tgagttccct cccctccaga gggatgtcga cacatagttt       780
     ggaggatatc acgcaggaac ctcaatcacc gttgccgggc accagccagc agcagatgag       840
     gtctccacct tcaccagggg actcgccaca gacgaagaag ccaaagggtt tgccaacccc       900
     gggaccggta gccagagtga caataaagtg gattcggcat accctagacc tggcctccac       960
     aaggaaaact gccatggctg tagatgtgac ccgaaatttg ttctctaagc tggacgagct      1020
     ggacacagca gtcatagatc tagtcataga gaacctccag ctgaggagcc aggtggagga      1080
     ggcaagaagg tccgcggaga tctgtgtggg ggccgctgca gcgcaattcg gaacagagct      1140
     acggctcaga gaggcggcac atgagcaaac cctggaggct gttgtgacca gatacgccga      1200
     gaaggaggcc atcaggtccc tggagacggc acccgtgagg caaaacgtaa ctgaagaaca      1260
     aatgtgcacc gaagaacctc caacatttgc tgtggtaacc aggaggaaac aaagccgaac      1320
     ggtcgacagg atcgcggatc gctcaaggtc cagagccaca acgaggaaca aaaggatcag      1380
     agagacacgg caggccgagc acctaccttc cttcatactc aacgagtcgc ccggcaaatc      1440
     aaatactgag gtacgcgacc ttatttggaa ccaggtggta gccaaaaact ccagacccaa      1500
     gtgccacacc atcaccacca aaactggcaa gaccattctg aagccctctg acaaggagac      1560
     cgtggacgca ctgaaataca tctccaaggt atcaaccctg ctaaaagagg acagcctgcg      1620
     ttggccaagg gtgatcattc ggggtgtcag ctcagacatg aagtttgacc accagataca      1680
     acaatgcatc atagcgcaaa acccagagct aggtttcgac gataacgagg acgaaatggt      1740
     gattaagccg gtattcaaga gcggtcccag ggacaggagt accacgaatt ggatcgttga      1800
     ggtaaatcca aaacacttcg agaagttcga aaacaccaca atcttccttg gcttcatgag      1860
     gtgtcgagtc agcgcctacg aggaggtcac acagtgtcat ctatgcttaa gatatgggca      1920
     tcctgcttcc aagtgcctgg aaaaagattg cgtctgtgct cattgcgggc ggaaggctca      1980
     caaagcggct gactgtcctg ctgccgaagc agatcccgtg tgcattaact gcagaggtaa      2040
     acacagtgcc agggacaaga catgctctgc aaggacggct ttcttggtca accaggtcag      2100
     gaggaccgat tatgggaagt cgcaatgagc gtccatcccc cactcaagat tgtgcagcta      2160
     aacatgggga gagcggccgc ggtcaacgac cagctcttgg cctactgcca ggaatcggga      2220
     gtggatattg ccatggtcca agagccttac accaacaggg gcaaactcac aggtttcgag      2280
     acagccccga taaggggtta tctttctaag ggcacacgac gaagaggcgc ccccaattac      2340
     gtggactatg gtgcggcaat aatcgttttc aatgccaact tggtgatagc gaccagatcc      2400
     gtgggaacca ctgaaaattt cgtctccata gacctggatt gcgatgcaga tggcactgtg      2460
     accttgatca gtgggtattt caagtaccga gttcccacag aggtgcatgt ggatgtacgg      2520
     ggacccctgt tccagaccgc agcacaggag gtactcatta cgctggacgc caatgcgttc      2580
     tcaacccgtt ggtttagcag aatcaacgac agacgaggga aggctttggt cacgtggctg      2640
     gacgaccata acctgaatat tgcaaacaaa cgcagtccac acaatacctt cgacggaccc      2700
     cgaggtagaa caaacatcga tatcacagtc tgcagtgatt acttattggg caaaatccgg      2760
     gaatgggctg tcattccagc tgccacttcc agcgaccaca accttatttc cttcactgtg      2820
     gatctgagtc taagggaatt catccaccgc agcatacgtt tgaacctctt gaggagaaat      2880
     tataatacct tcgtccaaga atatgaagcc aggacaacac aaagaaccga aattgctctc      2940
     gatctagata ctatggccac ccaggtattt gaggacgtaa catattctgc aaattgacat      3000
     gccaccagaa gcactcgcaa aaggaaagtc acaccgcctt ggtggtctcc tgagctgacc      3060
     aacaagagga aagaggtacg cgcagcagca agacacaagg ctgacggggg tcgacaacac      3120
     tacaactcca taagaaacga gtacacaatg ctgctgagga gaaataaagt aacctcgtgg      3180
     aaaaactttt gcaccctgga gggggtccaa ccctggggga aattataccg atggatgaag      3240
     ggcggaaaca aacccctaac ggcaattggg ctaatgaggc tccccgatcg acgaatcggt      3300
     gtccacgctg ctaaatgtgc tgatcccgaa tgacccaact acccaggagg atgcacgtcc      3360
     cgcgctagca gaaggggacc ttgatccagt aacagaggag gagctcaagg tgcacgcatg      3420
     gggcctgtcg ccaaacagag caccggggac ggacagcatc acggccagaa tgatcagagt      3480
     tctctggccg gcaatagccc cccggctcgt taccatagta aacgagagtc tgaggacagg      3540
     acgattccca aacagctgga agatggctca ggtcatacca atactcaagg agcaagatag      3600
     ggacacagca ctccctaagt ctttcaggcc tgtgagtctg ttgcctgtaa tggggaaaat      3660
     cacggagaag gcaataaatt ctcgactgtc cgagcagata agaccaaggc tctcaggtaa      3720
     acagtttggc tttacccctg gtcgctcaac attggatgct atccaaagcc tattaacatg      3780
     gatcaatctc agtgcagaac aacatgtcat aacgatattc cttgacattt ctggggcttt      3840
     tgacaacctt ttgtggccgg cactacagcg cgacctgtgt agtttgggtg ctagtctaca      3900
     catgaggcat ctcattgctg actacctgag aggtcgcacg gctaccatga cgataggagg      3960
     agtatccaaa tccgtgaggg taatgaaggg gtgcccccaa ggatcaatac tgggtccagt      4020
     attgtggaac gtcacagtgg aaccgctact acaaactgat ttcccggact atgtgaacat      4080
     acaagcctat gcagatgaca tagcaatatc tgtcttaggg ccaaacaggc gcacgctaat      4140
     cgagcgggct gaagccacgt tgctgccagc cctagcctgg gcacatgaaa ggggcttgac      4200
     tttctctgcc cagaaatccg ttgcgatgat caccaagggc acacttgttc cgggtttcac      4260
     tctctccttc ggtgacgaga ggatagtttc agccgataat ggaagatacc tggggatacg      4320
     gttagaccag aagaagtcgt ttatgccaca ctttgaggct ttaaaaagct cgtctgagac      4380
     cctgttctcg agattaagag gaaccatagg cgcaggttgg ggacttagga gagagaatat      4440
     catgatcctc tatcgcggcg ttttcgtgcc aaagattgcc tacggttcgc aattctgggt      4500
     ccacaaaata aagacacgac agatgatcag aaactttggc tccatccaga gaagagcact      4560
     gcttggtatg accagtgcat acaatacaaa ttcaacggat gccttacagg tgatagcggg      4620
     agtcccaccg ctggatatag agatccaatg gctggtgcaa aaagccgagg ttgctttgct      4680
     cccagcacaa ttgagaaacg aaactctaaa ggccaagaga gaagccttgc tggatgagtg      4740
     gcaaacaaga tggtcgaact cgatcaaggg caggtggacc tttcggtttt tccccgacgt      4800
     cagagaaaga ctactgctac ccctttccct gggtcacgaa gtggtgcagt tcatgtctgg      4860
     ccacggaaac tcccgggcca aactagcgag tttcaactta caaccagatt cgaggtgcgc      4920
     atgtggtatg ggtgaagagt tcgtggacca tgtgctgtat aactgtaccc tgcatgccga      4980
     acacagggct cgcggtactc agagcaggtc acctatggcc gtgcgatccg gacacgttgg      5040
     tttccacatc caagctttat acggcgctag taagattctg caaaacggct gcttacatgg      5100
     aatgcccatg aggtggaaaa acaccaggac ggacaagaca ctctgggcgc cagagtgcca      5160
     aaccccgcat gtgttctgga cgagtgtcaa ggcgagagat ggcagaagcg gttcacatgt      5220
     ggggccgtcc tgaggggaca ctcgttgcgt cggggacgcg ggcggcgcta acgcgtacaa      5280
     cagagcatcg tacaacatgg aggcgccgcg gtggccgaaa gccctggtga gtagttcaca      5340
     cctacatcgg gccctgtgtc tggggccatg gaagaataca gacacagtct accccgcttg      5400
     tcgtatgagg cgactaaagg ggtggggttg cgacctacgc atcgcgggcg agcgcccgcg      5460
     gtaaaggccc accaagagcc tgctgaaaca gcgaatcctg ggagatcggg cttgccttgt      5520
     cgaacatcct accgacgatg acctacctaa cgggggtgag gtcggtgcca cgggaagggg      5580
     gggagcccca ctgccccgag ttatgcccgg gtcagtgccc ctctactctg ggcgcgtgtc      5640
     ggcttgccgg cgggcgctca gagccggttt ggtttcgtgg tggctgtagc gggagctact      5700
     gatatggtta gagccaaagc tggcaggcga aggtctccgg tgaacggctg taccgtcacg      5760
     gggatacaaa tctctttggc gttgcagttt ctcccgggca cacagctggt ctaccgttgg      5820
     ataaaaacag cggaggttgc ccgtaaccaa aaacgggaag tgatgggata ggtcacgacc      5880
     gcaccagagg tggcacacgg tggctccaga cctgtgccgt ctggtacggc gcttcggcac      5940
     cggtgctggt ggtccataga cgacacgctc gcggcgtggg cacttcagcg cccccgcacg      6000
     ggtgaacctt tatggctcgt aacaagcgca cagcgcttac acacggtcca tagttgtagc      6060
     cgcaaggcat caaaccgagg atactct                                          6087
//
ID   R1-2_BTa    repbase;    DNA;    INV; 3676 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3676
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 717-717 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           346..3456
FT                 /product="R1-2_BTa_1p"
FT                 /translation="MQQDKLTVIDTPTYTTTQSENKKTPTRQSKTNNKEKS
FT                 FAALVCNMREMPAAYDVIYEISNRLNVGINIFTEPNKNRSTKNGHFLSSNN
FT                 RTAVSTNRNLIGQSTSWEKHENFVSFSWRGITIISCYFSPNDSNETLTQDL
FT                 DILRLKILQTPGEIIITGDFNCRSPMWGDKLLNTRGRILEDWILSTDLTAV
FT                 NQSIEYTPTFIGPQGDSVPDIVICTPQTLKKLKVKVLEDSVLSDHQSILIE
FT                 FNSNFSNNNTPNKIPSQEGWFLETSKYPEFSKLTKDLTQNHLQKTKELSPG
FT                 LCEEIITTAANLTFKRREAVKINKRPYWWNKEITKSKKNCDKKYREIMKKR
FT                 RRNEEIIEDQKQLIEYKNELKQKIMISKKEKWNEIIKDLDRDIWGRAYKIF
FT                 KNKLKRPSNHDTNSLTKEELLQTIDNLFPNYGYITWKKTHVPKEEIPLITN
FT                 EELFTAIRRQKNYKAPGPDNIIPVLTKIFINSNFTSFKNMLNSMLQQCIFP
FT                 KEWKTSKLALIPKPSKHAKKQKTYRPICMINTIAKIFEFILNQRLINSFTP
FT                 SKAQFGFRKNRSTTDAINNLKDIYHHHMHNSATQKRLLLLLNIDIKNAFNS
FT                 VSWDDVINTMIKRQIPQYLIEILKSYLSDRYLIFPEFKVQINSGXAQGGCL
FT                 SPTIWILIFDEILKLHTTPEILKQAYADDTLLIITGNDTQXLQKTTKEVTK
FT                 TIKNALKKKKLLTEDSKTEALLLHGPLKAKDIELTVGESNINAAPSLISLG
FT                 FTLTRGLRMGQHIKDMCSKAKKVVSNFRPILPNLGGPTFVKRKLIIHAVFS
FT                 IIFYGITVWADTXLTKTSKNELRKTIRPLKIALCSAYRTTSDFCLDIISGI
FT                 PPIEILIEERLARXNREDQYEIERDKIKKWLVLWNGEEKNYWIRSVVPDPR
FT                 RWLERKFGEPDFYITXFLSGHGAYAQYLHRFKLKDSPLCPCNKKEIDSPHH
FT                 TFFECKHNEDLRTKLETETNQTISTQNILEILTSSKENWRRVHHFIRETLI
FT                 RKQRLLNADQSTNASLEEKPNGNAEENQPQH"
XX
SQ   Sequence 3676 BP; 1492 A; 777 C; 523 G; 874 T; 10 other;
     aaacatatac tgccaacatc aatctsttta cttcagatgt gatttttgca aagatcgtgt        60
     tattccgaca ttaaaaacaa aaattcaagg gaaaattttt gaagtttacc caaaaatgcc       120
     ctattcattc aaactaacta accaaaatca acccttccaa gaactcaacc tctcaaaaaa       180
     tcagataccc tcaatctcca actctgagac wwcactacct aaaacaaact ctaaaaccaa       240
     tcataccatc atctacgatc ctaaaaaagg ttactttcaa aaaattaatc cagacaatca       300
     agaaaaacca aaaaaattaa tccagattta tacagattcg aaattatgca acaagataaa       360
     cttacagtca ttgatacccc aacctataca actactcaat cagaaaacaa aaaaactcca       420
     accagacaat caaaaacaaa taataaagaa aaatcattcg ccgcactagt ttgcaacatg       480
     agagagatgc cggcagctta tgatgtcatt tatgaaatct caaatagact aaatgttgga       540
     ataaacattt ttaccgaacc caataaaaac agatctacta aaaatggaca ttttctaagt       600
     tcgaacaata gaactgcagt atccactaac agaaatctaa tcggtcaatc cacatcctgg       660
     gaaaaacacg aaaactttgt aagtttctca tggagaggaa taacaattat aagttgttac       720
     ttctccccca atgactcaaa cgaaacacta actcaagacc tggacatcct gagactgaaa       780
     attctacaaa ctccaggaga aattatcata acaggagatt tcaactgccg ctctcccatg       840
     tggggcgaca aattattaaa cacacgaggc cgaattctag aagactggat attatccacg       900
     gacttaacag ctgtcaatca atctattgaa tacacaccaa ccttcatagg cccacaggga       960
     gactctgttc cagatattgt catatgcact ccccaaactt tgaagaaact gaaagtcaaa      1020
     gtcctggaag attcggtact cagcgatcac caaagtatcc taatagaatt caactccaac      1080
     ttttcaaaca acaacacacc gaataaaatt cctagtcaag aaggatggtt tttagaaaca      1140
     tcgaaatacc cagaattctc aaaactaaca aaagatttaa ctcaaaatca tctacaaaaa      1200
     acaaaagaat tatcacctgg tctttgtgaa gaaatcatca ccacagcagc aaatcttaca      1260
     ttcaagagaa gagaagccgt caaaattaat aagcgaccat attggtggaa taaagaaatt      1320
     accaaatcca aaaagaactg tgacaaaaaa taccgagaaa ttatgaaaaa aagaagaagg      1380
     aatgaagaaa ttattgaaga tcaaaagcaa ctaatcgaat ataaaaatga attgaagcaa      1440
     aagatcatga tatcaaagaa agaaaaatgg aatgagatta taaaggatct ggatagggat      1500
     atatggggtc gagcatataa gatcttcaag aataaactca aacgcccatc aaatcatgac      1560
     acgaactccc taacaaaaga agaattactt cagacaattg ataacttgtt cccaaactac      1620
     ggatacatta cttggaagaa aacccatgtt cccaaagaag aaattccgtt aataactaac      1680
     gaagaacttt ttacagcaat ccgtagacag aaaaactaca aagccccagg acccgataac      1740
     atcattccag tactaacaaa aatattcata aactcaaatt tcacttcatt caaaaatatg      1800
     ttaaactcca tgctacaaca gtgcatcttt cctaaagaat ggaaaacttc aaaattagca      1860
     ctaatcccaa aaccaagcaa acacgcaaag aaacaaaaaa cataccgccc tatatgtatg      1920
     ataaatacaa tagctaagat cttcgaattt atattaaatc aaagactaat aaactcattc      1980
     actccttcaa aagctcaatt tggatttcgg aaaaatcgca gtacaacgga cgcaataaac      2040
     aacttaaaag acatatatca tcaccatatg cataacagcg ccactcaaaa aagacttctt      2100
     ttgttgttaa atattgatat caagaacgca tttaatagtg taagttggga cgacgttatt      2160
     aacacaatga ttaaaagaca aatccctcaa tacttgatag aaatactgaa atcttacctw      2220
     tcagacagat atctaatttt cccagaattc aaagttcaga taaattctgg agsagcacaa      2280
     ggaggctgcc tttcccccac catatggata ttaattttcg acgaaatctt aaaattgcac      2340
     acaacaccag aaatcctcaa gcaagcatat gcagatgaca cccttttaat aataactggc      2400
     aacgatactc aakaactaca aaagactact aaagaagtwa cgaaaacgat caaaaatgca      2460
     ctaaaaaaga aaaagctact aacagaagat tctaaaaccg aagcacttct gcttcacggt      2520
     cccctcaaag ccaaagacat tgaactgaca gtcggcgaat ctaatattaa tgctgcccca      2580
     tcgctgatct cccttggttt cactttaaca aggggactca gaatggggca acacataaaa      2640
     gatatgtgct ccaaagccaa aaaagtagtc tcaaattttc gcccaattct tccaaatcta      2700
     ggtgggccta cgttcgtaaa aaggaagcta ataatacatg ccgttttctc aatcatattc      2760
     tacggtataa cagtatgggc cgatacaaaw cttacaaaaa caagcaaaaa tgaactcaga      2820
     aaaaccatca gaccccttaa aattgccctt tgttcagcat accgtacaac ctccgacttc      2880
     tgcctggaca taatctctgg aattccaccc atcgagattc tgattgagga acgtctggcc      2940
     agatwcaacc gtgaagacca atatgaaata gaaagagaca aaatcaagaa atggctagta      3000
     ctttggaatg gagaagaaaa gaactactgg attagaagtg ttgtacctga ccccagacgt      3060
     tggctcgaaa ggaaatttgg agaaccagac ttttacatca ctcasttctt atcgggccac      3120
     ggagcatatg cccaatacct ccatcgcttt aagctaaagg actctccact ctgcccttgc      3180
     aataaaaaag aaatagactc acctcatcat acattctttg aatgtaaaca taacgaagac      3240
     ttacgaacca aacttgaaac agaaacaaat caaactattt caactcaaaa catcttggaa      3300
     attttaacat cctcaaaaga aaattggaga agagtacacc attttattcg ggaaactctc      3360
     ataaggaaac aacgtctttt gaatgcagac caatcaacca atgcctccct cgaagagaaa      3420
     ccaaatggta atgccgagga aaatcaacca caacattaaa ctagagtctg aggaactcaa      3480
     gatacaatta ttattaactt agaaatctaa gcttccacgg gacagggggg aattataagt      3540
     aacaaataac tgtattattt aggaactttc ttttaaaatg taaacaaggc cttcgggtga      3600
     tattctgtta aatatcattc caccctgtaa ataaacataa taaaataatt gattttcgtt      3660
     taaaaaaaaa aaaaaa                                                      3676
//
ID   R1-2_CoFl   repbase;    DNA;    INV; 5544 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5544
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2382-2382 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           934..2217
FT                 /product="R1-2_CoFl_1p"
FT                 /translation="MAELGRERADSASEPHDLELGGGSKLDPEVEFRKSAD
FT                 IAFEVLARAMIDLKALMAKHPNTARTIKDLVGLAATAVGALKRYQDRLDEV
FT                 EEPEIGIEQKEKRKRRRGRETPSPKLTPEKASKKPRGLGFQPQPEHGVVGG
FT                 TGSGKNWTEVQNRKKKKKPVKEKAREDKIPKSVAKPSKATEGRSQRARPDA
FT                 IIVQPAEGKKYAEVLALMKRVNVVELGANVGSIRETRTGSVLVELRNTTSD
FT                 CREAFADALKNAVASAGGVRTLAPRLTYEIRDVDPTVTEQDVQAALRGCFE
FT                 GEKAPVLAVRLSSGTVRGNRVAYVEAPATAATILNKMHHIRLGWVNCRMRP
FT                 KYNAERCFKCLGFGHIARQCGGPDRTGACWRCGERGHVARNCSKKEVSCYL
FT                 CECVVPKPDTGHVAGTAGCQALRAFAGGAQRKWR"
FT   CDS           2121..5198
FT                 /product="R1-2_CoFl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRRPETGHRTRRWDCRVSSAAGVCRRSSAKMAVILQV
FT                 NLDRTVLAHDLLDQFSRARGVDLLFINEPSRTLPGRGWYCDRTGCAAILIR
FT                 SDKFPVSDSGGGDGFVWIRSGSVFYVSCYISPNISIGVFRGRLAELEDAIR
FT                 VCGENGDIVLAGDFNSKAITWGEPRTDSRGRAVLEMAARLDLIVMNSGSSA
FT                 TFRRTGNRGTIIDLTLASSQMAARVSDWQVLEDYTASYHQYVSFIINEEHG
FT                 ANLRGVPRGRAAGWNVAKLNRDLLREAMTSAPPPADLSKITNSAEVEALVG
FT                 GTMRRVKEWCDTCMPKRTARRGRRSCYWWTEEIANLRGEAQRLRRLAQRHR
FT                 NREDAEVAVAAYREAKSILVREIKVSKNRCWRELIADVDKDTWGLGYRIAL
FT                 KRLRGSDPVAPMEPSFLERVVSCLFPEHPERRREDISVGEVPLFTLDELRS
FT                 VVSETPGRKAPGPDGVPSEVLKVIAAEKPHVLLDMFNASLRNGLFSERWKI
FT                 QRLVLLDKGKPPPLVPSSLRPLCMLDNAGKMLERLIRTRLRGEVSLSDNQY
FT                 GFRGGRSTVMAVAEVLESVREAWKPSHKTRSACVLVTLDVRNAFNSAKWSD
FT                 IMRALRRQNVPEYLRKILDSYLQDRVLRYDTKDGPRERRLTSGVAQGSALG
FT                 PDLWNLVYDELLRLEMPPGVKLTGFADDIALHVTARSREEAERKIRWAVAI
FT                 VSEWLRDHGFELAIDKTEMVVLTRQRWFGGDFRLNVAGEAICASPVVRYLG
FT                 VWVDSRLTFWEHIKRAADKAAKVAGALTRLMPNVGGPREAKRRLLASVSNS
FT                 ILLYGAEVWADAVARRDVRERLISVQRIGSLRIASTYRTVSSAAVMVIART
FT                 IPVVLLALERRRKFLGSGDESDGDRRAETLTTWQQEWDQASVGRWTHRLIP
FT                 NLRPWVERGHGEVNYYLTQFLSGHGQFDAYLHRVAVKASPRCAYCPAVVDT
FT                 VEHTFFVCERWHRERQQLVDKLGVTPTPENIISEMLRTEERWRAVDGYVGS
FT                 VVRRKKEEEKAAAREAEAAL"
XX
SQ   Sequence 5544 BP; 1295 A; 1374 C; 1781 G; 1091 T; 3 other;
     actagagctc gaagtgagct gtctmgatcc ccgaatgaaa gccagccgac ttggagggcc        60
     agcaggggct gaccccccgt ccaagccact gagaatcagc ctgctgtctt ggtatggtgg       120
     taaccttgac aggtcttaac caatccccac cctgtcgtgt atagaagtaa gcggtggtta       180
     taacattctt ctcagataca tgcatcacac tctcactaaa caaacacagg aatacttacg       240
     gaatgtcctg ggttgcgkgt ggcggggcct ttcccggact tgcgttggag gcctggcggc       300
     gggtgaagcc ggacgatgag gcccaggtaa gtctgggtaa ccacatctga tatggctgta       360
     cgcctcataa acaaaaaaga cgtggtgggc tgactaatct aggcttacta ccactgagga       420
     ggctatatgg cggcacccta gtgccttacg ccagctcgtt ttgtcgggtt gtctgcgcgg       480
     tcgtgggact gtacacctgc cgctcgtctc gctgggatga ctgtagtgta ccaacatata       540
     catacattac acacgaacac cattcttaga cttgttactc aacgccaggg cagtctccgt       600
     gggtgggact gagggagagt ggcgactccc ggccagcccg agcaagtagc ggttctctct       660
     ggtaacagag agggctgctg ccctggtttt aaccctttct aaatacttat ttctagaaaa       720
     aaaggtagtg ctggccttcg cgggtcagta cgccactcaa acaagttgtc aaaatgaaga       780
     gcgtcaatga aaaacaacta ccccaggcgg taacctctct gagaaaatcc gctggcagtt       840
     ccgatccggt gaaagcccgg gtggctgccg taggctccac ggattctggg gggggggggg       900
     cacaaagacg ttactctcgt agtaaggaga atcatggcgg aactgggacg agaaagggct       960
     gactctgctt cagagccaca cgatcttgag cttggtggag gatccaagct ggacccggag      1020
     gtcgagtttc ggaaaagcgc kgacatcgca tttgaagtac ttgcgagggc gatgattgac      1080
     ctcaaggcgc ttatggctaa gcaccccaac acggcgagga ccataaagga cctcgtcggg      1140
     ctggcagcga cggctgtagg cgcccttaag cgttaccagg atcggcttga tgaagtggag      1200
     gaaccagaga ttggtataga acagaaagaa aaaaggaagc gaaggagagg aagggaaacc      1260
     ccaagcccaa aattgacgcc agaaaaggcc tcgaaaaagc caagagggct tggctttcag      1320
     ccgcaaccag agcacggcgt ggttggtgga acgggcagtg gaaaaaattg gacggaggtc      1380
     cagaatagaa aaaaaaaaaa gaaaccggtg aaggaaaagg ctagggagga taagatccca      1440
     aaatcagtag ccaagccatc aaaggccact gagggaagaa gtcagagggc caggcctgat      1500
     gcgattatcg tacagccagc agagggcaaa aagtatgccg aggtcctggc cctgatgaag      1560
     agggtcaatg ttgtcgagct cggggcaaac gtggggtcaa tcagggagac gagaacgggc      1620
     agtgttctcg tcgagttgag aaacaccacg tctgactgcc gcgaggcgtt cgccgacgcg      1680
     cttaaaaacg ctgtggcgag tgctggcggc gtgaggaccc ttgccccgcg cttgacatac      1740
     gagatcagag acgttgaccc aacggtgacg gagcaagatg tgcaggcggc acttagaggc      1800
     tgttttgagg gagagaaggc ccctgtcttg gcagtgcggc tgtcgtctgg cactgtcagg      1860
     ggaaatcggg tagcctacgt tgaggcacct gcgacggcgg ctacgatcct caataagatg      1920
     catcatataa ggctgggctg ggtgaattgc aggatgcggc ctaagtacaa tgctgagcgc      1980
     tgcttcaagt gcctgggctt tggccacatt gctaggcagt gtggcgggcc tgacaggacc      2040
     ggggcgtgct ggaggtgtgg tgaaaggggc cacgtggcac gtaactgctc caaaaaagaa      2100
     gtgagctgtt acctgtgtga atgcgtcgtc ccgaaaccgg acaccggaca cgtcgctggg      2160
     actgccgggt gtcaagcgct gcgggcgttt gcaggaggag ctcagcgaaa atggcggtga      2220
     tcctgcaagt aaaccttgat aggaccgtgc ttgcgcatga tctgctggac cagttctccc      2280
     gcgcccgggg tgtggacttg ctcttcataa atgagccgtc ccgcacgtta ccgggtcggg      2340
     gctggtactg cgacaggact ggatgcgcgg ccatcctgat tcgcagcgac aagttccccg      2400
     tatccgattc cggaggcggg gacggtttcg tgtggatcag gagtggaagt gtattctatg      2460
     tgagctgcta catttcccct aacatatcga tcggcgtctt tagagggcgg cttgccgagc      2520
     tcgaggatgc tattcgtgtg tgcggggaga atggcgacat agtcctggcc ggtgacttca      2580
     actccaaggc catcacttgg ggggagccga gaaccgactc cagggggcgg gcggtgctag      2640
     agatggctgc aaggctagat ctcatcgtca tgaactctgg tagttcagca acgttcaggc      2700
     gaaccggaaa ccggggcacg atcatcgacc ttacactagc gtcgtcacaa atggcggcgc      2760
     gggtgtctga ctggcaggtt ctggaggact atacggctag ttatcaccaa tatgtcagct      2820
     tcataattaa tgaggaacat ggtgcaaact tgcgaggagt gcctcgaggg cgcgcagccg      2880
     ggtggaacgt ggcgaagctc aatcgagatt tgttgcggga agccatgaca agcgcgcccc      2940
     ctcccgccga tttatccaag atcaccaatt cggcggaagt cgaggctctt gtaggaggta      3000
     ccatgagacg tgtcaaggag tggtgtgaca cgtgtatgcc caaaagaacc gccaggcggg      3060
     gccggcgctc gtgctactgg tggaccgaag aaattgccaa cctgcgcggg gaggcgcagc      3120
     gcctacgccg tcttgcacag cgacacagaa atcgcgaaga cgcggaggtg gctgttgccg      3180
     cgtacaggga agcaaaaagt atcctggtgc gggagatcaa ggtgagcaag aaccgatgct      3240
     ggcgcgaact catcgctgat gtagataaag atacgtgggg cctgggctac cgaatcgcgc      3300
     taaaaagact gcgcggctcg gacccggtgg cgccgatgga gccttccttc ttggagaggg      3360
     tggtctcttg tctctttccg gagcatcccg agaggaggcg ggaggacata agtgtgggcg      3420
     aggtgcctct ctttaccctc gatgaattga ggtcggtggt atcggagacg ccgggccgca      3480
     aggccccggg tccggacggg gtgccgtccg aagtcctcaa ggtcatagcc gcggaaaaac      3540
     cacacgtgtt gctggacatg tttaatgcgt ctttgcgcaa cggactgttc agcgagcggt      3600
     ggaagatcca aaggcttgtc cttctggaca agggtaaacc accccccttg gtcccgtcgt      3660
     cgctccgacc tttgtgcatg ctggataatg ccgggaaaat gctcgagagg ctgatacgaa      3720
     ctcgtctaag aggggaagtc agtctctcgg acaatcagta cgggtttcga gggggacgat      3780
     cgacggtcat ggctgtggct gaggtccttg agtcggtgag ggaggcatgg aaaccctcac      3840
     ataagacgag aagcgcctgt gtcctggtga ctctcgacgt tagaaacgct ttcaactcgg      3900
     ccaaatggtc cgacataatg agggctttga ggcgccagaa tgtaccagaa taccttagaa      3960
     agatactgga tagctatctt caggatcgtg tactccggta cgacacgaag gatggaccaa      4020
     gagagaggcg cctgacgtcg ggagtcgcac agggctccgc ccttggccct gacttatgga      4080
     acctggtcta cgatgaactt ttgcgccttg aaatgcctcc gggggtcaag ctgacgggtt      4140
     ttgctgatga catagcactg cacgtcacag cgagatcccg agaggaggcc gagcgcaaaa      4200
     ttcggtgggc ggtcgcgata gtgtcggagt ggctgcggga tcacggtttt gaacttgcga      4260
     tcgacaagac ggagatggtc gtccttacca ggcaacggtg gttcgggggg gactttcgcc      4320
     tgaacgttgc gggtgaggca atctgcgcaa gcccggttgt gcgctacctg ggggtgtggg      4380
     tcgactcacg gctcaccttc tgggagcaca tcaagagagc agccgacaaa gccgccaagg      4440
     ttgcgggagc gctaacacgg ttaatgccga acgttggggg cccgcgagag gccaaaagac      4500
     ggcttctggc gtcggtctcc aactcgatac tgctgtacgg cgcggaggtg tgggcggatg      4560
     cggttgcgag acgggacgtc cgagagcgcc tcatttcggt gcagcgcatc ggatctctaa      4620
     ggatcgcttc cacctaccgc acggtttcct ctgctgctgt tatggtgata gcacgaacga      4680
     ttcccgtcgt gttgcttgca ctggagcggc gaaggaaatt cctgggctcc ggtgacgaaa      4740
     gtgatggcga caggcgggcg gaaacgttga cgacgtggca acaggagtgg gatcaggcta      4800
     gtgtgggtag atggacgcac cggctgatcc cgaacctgcg accatgggtg gagagagggc      4860
     acggagaggt gaattattac ctcactcagt tcctctctgg gcatggtcag ttcgatgcct      4920
     atctccatcg cgtggcggtg aaagcatccc ccagatgtgc ttactgcccc gcggtggttg      4980
     ataccgtcga acacacgttt ttcgtgtgcg agagatggca ccgtgagcgc cagcaactgg      5040
     tggacaagct cggcgtgaca cccactcccg aaaacatcat ctctgagatg cttcgcaccg      5100
     aagagagatg gagggcggtg gacggttacg tcgggtcagt ggtccgtcgc aagaaggaag      5160
     aggagaaagc cgccgcgcgg gaagccgagg ctgcccttta ggcggcagca tggggaagca      5220
     acaaatgttg tagcgctaga gaacgggtgc caatcttccg ggaccccgag tccttttcag      5280
     gactcgagag gactggcacc tctagcaaat ggtggcgagt cagctcgtta atgctgtgag      5340
     acgcgatggt ctccctggtg gctccaccct gaagtaatgc taacgcggtt ccggggtgga      5400
     acaaaagcca cgcggcatgg gggggggttt agtgggtatg ggtggtctaa taaaaaaaaa      5460
     aaaatccacc gagtcccaca ctaccactgt ccctgcggtg tgcctcaatg catttcccct      5520
     ccctccacaa aaaaaaaaaa aaaa                                             5544
//
ID   R1-2_DAn    repbase;    DNA;    INV; 5437 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5437
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 399-399 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           855..2261
FT                 /product="R1-2_DAn_1p"
FT                 /translation="MEGKNKITPGGTHNSGNPPAEIPAARARILEALTIIP
FT                 TKTASPVAHLAGGSVCATSETAEELQAFGRGNKIKRTPPRQTASDHTPKRY
FT                 REPNSPPSSSQPEKKLKTPLSPIDEMGAILLDLLAKVNEQRVRSINQGMKN
FT                 SFARLKELQELLKDQTLMAPNQEAGDRCSCNREAGGNKAHVEEATQTTPVR
FT                 ATYSKVARTKGPAEKFPPQKGKQAAEIKGAKKSLARKSRPDALIITGNAGS
FT                 TYGDVLKLVTRRQDGKLNDVCQNVKKTRRTAKGDLLLELAAGKDAKVLDLR
FT                 QTLSQVLGEAASVRAVTEETNIEIRDLDDLTTKDELVAAIVAQMSTQEEAF
FT                 RVKSLRPGYSGTQVATLGAGPDLASKILSEGRLRIGWTVCRVRERKAQRRC
FT                 YRCLNFGHIAAFCKEQTDRSNWCLRCGKPGHKVATCTSEAKCFLCAAANKP
FT                 DQAHVAGSKRCPLGNIEATRSRRK"
FT   CDS           2261..5245
FT                 /product="R1-2_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRIIQINLNHCEVAQSLLEQYARDKRVDVALISEPFR
FT                 KTRSQNYILDSTQSAAIWVFGTQPENTFAGEGFVQAKVNGIWLISCYLPPR
FT                 LTLQQFGRTLDEVAEAARPITDVIVGGDFNAWAEEWGSALTNARGRTLLET
FT                 FATLDVALLNTGSRHTFSRAGCGSVIDLTFCSSRLFRRTTWALSDEYTGSD
FT                 HKYIICDTSNGARETPGSRPIRFNPATLHTQRFAQGIRMEDPIGDAEDGAQ
FT                 HIMLAVEQACRASMKLSRNHSRHHEPVLWWSPEIAEAKRECLRARRLHQRA
FT                 RGRPDFEPKRQEFADKRRALKTLIKEAKKRCFLEMCDAAEQDPWGTAYRTV
FT                 VKKAKQAKPLPPREPQTMENIVEHLFPTLNYDAQVAESETAMPVPFQEVTI
FT                 QEIVEVTAAMKSGKAPGPDGVPDIVIKLAMATCPAAFAKVFSNCIREGVFP
FT                 RRWKVQSLVLLSKPGKPPEVPSSYRPICLIDHAGKALERCILRRLQNAITL
FT                 AGEISPLQFGFREGRSTIDAISMVKRIAAKAIEGTRWAGGGKEYCLIATLD
FT                 IKNAFNTARWDAIVEALQNLNIPANLVGIIKSYLSDRILRYDTTAGTQEHV
FT                 ITCGVPQGSVLGPTLWNVMYDGVLRLELPERAQIIGFADDVAIVVVAKTLQ
FT                 LAETSCNAAIERVVEWLTQAGLNLAHQKTEAVLISSRKRVETATIQVGGHV
FT                 VKSSRAIRYLGVMIDTRLCFREHLIEANKKAANVARALARMMLNCRGPKQG
FT                 RRLLLQTVCRATILYAAPVWAEAAKTKSYVKGVKGTYRLCALRVCSGFRTI
FT                 SDDAALAIAGMVPIDLLATEAKVVYEALVDQREEHPAGHRQGLKRDARAAS
FT                 MASWQRRWDESTKGRWTHQIIPNISCWMRRKHGEVNFWLTQILSGHGCFRS
FT                 YLYRFGHDEDPRCPRCGIEETAEHIVLSCPRFTGARDEFLGGMTTAELLGR
FT                 RMIEDADAWSNVCSFAVTAMKELRRLERQRAVARSARSEP"
XX
SQ   Sequence 5437 BP; 1482 A; 1483 C; 1551 G; 920 T; 1 other;
     gttgaagtga ggtcgaacgg agtggaagtg ccgcgccgga gctcctagta gatccagtcg        60
     agtcggctgt cctgtacgcg aaaatagaac aaaaagactt caggtggctg gagcgaggca       120
     caagcaaagc tcacctatcc aagacgagtg gtccagtacc caggcgtccc ggccccggtc       180
     accaactcgc caagtgtctg gtccaaggcc aggggtgtaa ggggtaagca cacagtgtct       240
     cttagatttc cacttccctc tctttcgggt ggaaatttgt tttttcccgc ggagaaaccg       300
     cggcaacgct ttctgctggc acggatcgct caagcagctg atctgcggtg ctgggcaacg       360
     aacggctgcc acggtcttca cacaccggca gagggcgcca tcaagcgcaa ccgagggcga       420
     gagwaaatgc cgtcgccgac agatggcgcc gttagcagct ctcttgtctc ctacatgcga       480
     gcatacattt aggcgcgaca tatggtagca cctgtgcacc cggagagtga gaggacaccc       540
     tgagagtgtt gcggacaagg tgtacaaggt cacggatcgg accgattgcc aaccccaccg       600
     ccgcggcggt acaccctggt aatggggcac tggcgaccga gcaggggcgg tatatccccc       660
     atcgatgctt cgatggatgt cccacctctt cttgtccctc tcccccgcct aaaatccacg       720
     ctgcgtctgt cccatactgg gcggcagcgt ggtctgcgtc tgtgccacat tggccggcag       780
     ctacggtacc tggcaggagg tataaactgc aagcctggca gcaggtataa aatgcaacaa       840
     caaccaaaaa aggaatggag ggaaaaaaca aaattactcc aggtggcacc cacaatagtg       900
     gaaatccacc cgcggaaatc cccgcggcta gggcaaggat tctggaggcc ctaaccatca       960
     ttccaaccaa aactgcttca ccggtggcac acttggccgg tggctcagta tgtgctacaa      1020
     gtgagaccgc ggaggagcta caagctttcg gtcggggtaa caaaataaaa agaacccccc      1080
     cccgacagac ggcaagcgac cacaccccga aaaggtatcg ggaaccaaat tcaccgccca      1140
     gcagttccca acctgagaaa aagctaaaaa ctcctctatc tcccatcgat gagatgggcg      1200
     ccatcctcct ggacctcctc gctaaggtca acgagcaaag ggtcagaagc ataaaccagg      1260
     ggatgaagaa ctctttcgcg agactgaagg aactgcagga gttgctgaaa gaccaaaccc      1320
     tcatggcccc aaatcaggaa gcaggggata ggtgcagctg caacagagaa gcaggcggaa      1380
     ataaggccca cgtcgaggaa gcaacgcaga ccacgcccgt gcgagctaca tacagcaagg      1440
     tagcgaggac gaaaggccca gcggagaagt ttcctccaca aaaaggcaaa caggccgctg      1500
     aaattaaggg cgccaagaaa agcctagcca ggaaaagccg tcccgacgcg ctcattatca      1560
     cgggcaacgc aggaagcacg tatggggatg ttctcaagct agtcactcgc cgtcaagatg      1620
     ggaagctaaa cgacgtctgt caaaacgtta aaaaaaccag gcgcacggca aaaggtgatc      1680
     tcctgctaga actggcggca ggaaaagacg ccaaagtttt ggatttgagg cagacgctat      1740
     cccaggtgtt aggcgaggca gcgagcgtgc gagcggtcac agaggagacc aatattgaga      1800
     tccgcgatct ggacgacctc accacaaagg acgaactagt ggcagcgatc gtagcccaaa      1860
     tgagcacgca ggaggaggcc ttcagggtga agtccctccg accaggctac tctggcaccc      1920
     aagtcgccac tctgggagcg ggcccagatc tcgcctccaa gattctgagt gaggggaggc      1980
     tgaggatagg atggaccgtt tgcagagtca gggagcgcaa ggcccagcgt cgctgttaca      2040
     ggtgccttaa cttcgggcac atcgccgcgt tctgcaaaga gcagacggat aggagcaact      2100
     ggtgtctaag atgcgggaaa ccaggacaca aagtcgctac ttgcacgagc gaggcaaagt      2160
     gctttctctg cgcagcagcc aacaagccag atcaggcaca cgtcgccgga agtaagagat      2220
     gccccctggg caatatagag gctactagga gccgacggaa atgaggataa tccagataaa      2280
     cctcaaccat tgcgaagtag cgcaaagcct cctcgagcaa tatgcgagag acaaacgcgt      2340
     agacgtggct ctaataagcg agccatttag aaaaacaagg agccaaaact acattttgga      2400
     ctccacgcag agtgcggcaa tctgggtctt cggcacccaa ccagaaaata cattcgccgg      2460
     cgaaggcttt gtccaagcca aggtgaatgg catctggctg ataagctgct acttaccgcc      2520
     gcgtctcaca ctccagcagt ttggacgcac gctagacgag gtggccgaag cggctagacc      2580
     cataaccgat gtgatagtgg gaggagactt caacgcctgg gcagaggaat gggggtcagc      2640
     cctcaccaat gcaagaggcc gtacgctcct ggaaaccttc gcgaccctgg atgtggccct      2700
     gctaaacaca ggctcccggc acaccttcag cagagcagga tgcggctcgg tgatagatct      2760
     cacattttgc agcagcaggc tcttcaggag gacgacgtgg gccctcagcg atgagtacac      2820
     tggcagcgac cacaaatata ttatctgcga cacctcaaac ggagcaagag aaacgccagg      2880
     ctcgagacct ataaggttca acccagcgac gctgcacacc caaaggttcg cgcaaggaat      2940
     aaggatggaa gacccgatcg gagacgcgga agacggtgcg caacatataa tgctggcggt      3000
     ggagcaggca tgccgagcta gcatgaagct cagcagaaac cattcccgac accatgaacc      3060
     ggtcctatgg tggtcgccgg agattgccga ggcgaaacgg gaatgcctcc gagctcgaag      3120
     gcttcaccaa agagccaggg gaagaccgga cttcgagccc aaacggcagg agttcgccga      3180
     caagaggaga gctctaaaaa cccttataaa ggaggcaaaa aaacggtgtt tcctggagat      3240
     gtgcgacgcc gctgaacagg acccgtgggg aacggcatac cggacggtgg tcaagaaggc      3300
     caagcaagcc aagcctttac caccacgaga accccaaacg atggagaata tagtagagca      3360
     cctcttccca acgctaaact acgatgcgca ggtcgcagag agcgagacgg cgatgccagt      3420
     cccgttccaa gaggtaacca tccaggagat cgtggaggtc acggccgcga tgaagagcgg      3480
     caaagctcca ggtcctgatg gagtcccgga tattgtaatc aagctggcca tggcaacgtg      3540
     cccggctgct tttgctaaag ttttcagcaa ttgcataaga gagggcgtct tccccaggag      3600
     gtggaaagtg caaagcctcg tgctcctctc caagccgggc aagccgccgg aggttccgtc      3660
     gtcatatagg ccaatatgcc tgatagacca cgcaggtaaa gccctggagc gatgcatcct      3720
     ccgaagactc cagaacgcca taaccctcgc aggagaaatt tccccgctgc aattcgggtt      3780
     tagggagggg agatccacga tcgacgccat atccatggtg aagcggatcg cggctaaggc      3840
     catcgaaggg accaggtggg ctggcggagg caaggagtac tgccttatag ctacgctgga      3900
     catcaaaaat gccttcaata cggcccggtg ggacgcgata gtcgaagcgc ttcaaaacct      3960
     caacatcccc gcaaacctgg tgggaatcat caagtcatac ctcagcgacc gcatccttag      4020
     gtacgatacc actgctggca cccaggagca tgtgatcacc tgcggggtcc cgcaaggctc      4080
     cgttctaggc ccgacactat ggaacgtcat gtatgacgga gtgctaaggc tggaactgcc      4140
     ggaacgggca caaattatag ggttcgcaga cgacgttgcg atagtggtgg ttgccaagac      4200
     tctccaattg gcggagacct cctgcaacgc ggctatagaa agggtggtag agtggcttac      4260
     ccaagccggc ttgaacctgg cacatcaaaa aacggaggcc gtcctgatat ctagcagaaa      4320
     gcgagtggag acggccacaa tccaggttgg cgggcacgtg gtgaaatcct ccagagcgat      4380
     taggtacctg ggtgtgatga tcgacacgag gctatgcttc agggagcacc tgatcgaagc      4440
     caacaagaag gcggcaaacg tagccagagc cctggcgcga atgatgctaa actgcagagg      4500
     cccaaagcaa ggacgcaggc tccttctaca gaccgtctgc agagccacaa tcttgtacgc      4560
     agcgccagtc tgggcggaag ccgcaaagac aaaatcctac gttaaaggtg tgaaaggcac      4620
     ataccgatta tgcgccctga gagtctgctc gggttttcgc accatctcgg acgacgcagc      4680
     cctcgccatc gcaggcatgg tgccaataga cttgctagca acggaagcaa aagttgtcta      4740
     cgaggcattg gtagatcaaa gggaggagca cccagcaggc caccgccagg ggctgaagcg      4800
     agacgccagg gccgcaagca tggctagctg gcaaagacgc tgggacgaat ccaccaaggg      4860
     ccggtggacc caccaaataa tccccaacat ctcgtgctgg atgcggagaa agcatggaga      4920
     agttaatttt tggctaacgc agatcttaag cggccacggt tgctttagaa gctacctcta      4980
     caggtttggt cacgacgagg acccaaggtg ccctagatgt ggcattgaag aaacggcgga      5040
     acacatcgtc ctgagctgcc cgcgctttac cggagcgagg gacgaatttc tcggaggtat      5100
     gacgacggcg gagcttctag gtagaagaat gatcgaggac gccgacgcct ggagcaatgt      5160
     gtgcagcttt gccgtaactg caatgaagga gctgcgacga ctcgaaagac aacgagcagt      5220
     cgccagatca gcccgaagcg agccctagag cggtgacaca caccccaaac ctggccctgc      5280
     gaagcaaagc ttcgcggcat taccgcagga aaccaggact cctccactat cctatcgaat      5340
     ttccactagc tttcccttta ttttactttc ccttatttta ccaccgtatg cctagtactg      5400
     aaacttgtaa ataaaccgat taaaaaaaaa aaaaaaa                               5437
//
ID   R1-2_DBi    repbase;    DNA;    INV; 4402 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-4402
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 941-941 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..1241
FT                 /product="R1-2_DBi_1p"
FT                 /translation="MRDIVDEIDYLQREVLSAVQGILEEQERAKVTAKKXC
FT                 AEVLASGNSKRPRGHETGKTLAMPAKKAMHKAPASEASQGGNRGKHAXTES
FT                 TSKPQKPPQEWKKVEPKARKPKVRPPRNDAIVIATSTGGSYADILKKVKAD
FT                 PQLEDLGQAVQAVRRTAKGELLILLNKVSDPKTAELQSKMKAVLGSNVDVR
FT                 ALTETTLIEVKDIDETTDKTDVICAVKSQFDVELPESAVVGLRAAYGGTQT
FT                 ATLRVMPDIGRRLMEKGKLRLGWTWCRIRSKITPKRCFKCMEFNHIAGNCR
FT                 SQEDCSKCCYNCGAKEHQARGCKAKACCMLCKRKKEKDCDHPTMSGKCPYF
FT                 RRALQGLRG"
FT   CDS           1202..4219
FT                 /product="R1-2_DBi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSVLQEGFARAKGLMKILQINLNHCEVAQSLLEQNVI
FT                 EQNVDMALISEQYRNKNSGEWLANSSKKSAIWSCGNPRRQISRKKSGNCFA
FT                 RAHVNGIAFYSCYLPPSLSLPQAINVLEEIAEDARENRPAVIAGDFNAWAT
FT                 EWGSPRTNARGRALLESFAALELVLLNSGTKPTFSRAGTSSIIDLTFVSAG
FT                 LASGSSWEVSDAYMGSDHAAIICTIKSTNGPPRVPKTVVGYKVETLDVEMV
FT                 QMLFEDLSTNGSADERANRIADYTKVACDASMQRKGKLPSRKRPAYWWNQS
FT                 IAEARKECHRARRAYQRARGRLEFRALQIYYREKRRALEKLIKESKRRCFN
FT                 NICEEIDSNPWGFAYKLVTKRLRAFSRPSPTCPVFLKRVVETLFPEQEGMA
FT                 RIAQIVDTRSIKLTSPEEVLEVLKTIKDDKAPGPDGIPNKVLKIAIKANTK
FT                 QYVDMYNACLTEGVFPSRWKTQRLVLIPKGDKAAEEPSSYRPLCMLDTVGK
FT                 ILERIIHSRLESALVGTNGLSEMQYGFRKGLSTIDAIGKLCEIADKAIEGK
FT                 RWLYGTKQYCIAATLDVKNAFNSASWHHTLNALSKLNVPVYIQRVIASYFE
FT                 GRLLLYETESGQSTHRVTGGVPQGSVLGPLLWNVMYDEILRITMPEGARLI
FT                 GFADDVAIVVTAKKLPDAERICNEAGKRASAWLDSKGLALAAHKTEAVLIS
FT                 SRQKVETATIKIGEATIKSRPSLKYLGVMIDHRLSFKEHLAYASGKAGRTA
FT                 AAISRIMANTRGPRQPGRRLLVSVVTSTLMYAAPIWARATKNGSYLQEGDS
FT                 VQRLCALRVCCAFRTVSHDAALVISGVIPMDLLAVESVGIRAGSTGVETVE
FT                 SLRKRCRQLTIAKWQERWANSSKGRWTHKLIPELQRWLGRKHGHVDFYLTQ
FT                 LLTGHGCFKYYLNRFKHERYPHCPLCESDNEDAEHVFFVCPRFENERRDLS
FT                 IRVGRTPAVCNLVEIMLESEVNWSAVCNMATIILKKLRIAERLRNSNRIVS
FT                 "
XX
SQ   Sequence 4402 BP; 1355 A; 1012 C; 1197 G; 834 T; 4 other;
     tgacccattc aaaaagagca acgtgatggc gagatcgcca gaaaaaaggg cggagwgcat        60
     cggcaagcag cctggcaccc ccccaatagt agagaaaggc akcccaaaag ctgctgatga       120
     agagcaaggg gatgtgctga aacagcttac tgaccttgga tcgaaggcgc tccatcacaa       180
     accctatgcg ggacatagtc gatgaaatcg actatcttca gagagaagtt ctgtcggctg       240
     tgcaaggcat actcgaagaa caggagagag ctaaggtgac cgctaaaaaa wcctgcgcag       300
     aagtgctcgc gagcggcaat agcaagcgac ccaggggaca tgaaactggg aaaacgctag       360
     ccatgccagc aaaaaaggcg atgcataagg cgccggcaag cgaagctagc caagggggaa       420
     ataggggcaa acatgctgsg accgagagca ccagtaagcc ccaaaaaccc ccacaggagt       480
     ggaaaaaagt agaaccgaag gcgaggaagc ccaaggtacg tccgccacga aatgacgcga       540
     tagttatcgc aacatctact ggagggtcct acgcggacat ccttaaaaag gtaaaggcag       600
     atccgcagct ggaagaccta ggtcaagctg tacaggccgt caggcgaaca gcaaaggggg       660
     aactgctaat cctcctaaac aaggtctctg acccaaaaac cgcagagctt cagagcaaaa       720
     tgaaagcggt cctgggcagc aatgttgacg tcagagcgct gactgagaca acgctgatcg       780
     aggtgaagga catcgacgag accacggaca aaacggatgt catatgtgcg gttaagtcac       840
     agtttgatgt ggaactgcca gaatctgcgg tggtaggact acgggcggcg tacgggggca       900
     cccaaaccgc cacactaaga gttatgcccg acatagggag gcgtctcatg gaaaagggaa       960
     aactcaggtt gggatggacc tggtgcagaa tccggtcaaa gataacaccc aaaaggtgtt      1020
     ttaagtgtat ggaattcaac catatagcag ggaactgcag atcccaggag gactgctcta      1080
     aatgctgcta caactgcggc gcgaaggagc accaagccag aggctgcaaa gcaaaggcct      1140
     gctgtatgct ctgcaagcgc aaaaaggaga aggactgtga ccacccaaca atgagtggaa      1200
     aatgtccgta cttcaggagg gctttgcaag ggctaagggg ctaatgaaga ttcttcagat      1260
     caacctaaac cactgcgagg ttgcccaatc gttgctggag caaaatgtca tcgagcaaaa      1320
     cgtagacatg gcactcataa gcgagcaata tagaaataaa aactccggtg aatggctagc      1380
     aaatagtagc aaaaaatcgg caatatggag ctgcggaaac ccaaggcgcc agattagcag      1440
     gaaaaaaagc ggaaattgct tcgccagggc ccatgtgaat ggtatagctt tctatagctg      1500
     ctacctgccg ccaagcctta gcctccccca ggcaataaat gtgctcgaag agattgcaga      1560
     agacgcccgg gaaaatcgcc ctgccgtaat tgccggggac ttcaacgcct gggctacgga      1620
     gtggggctcc ccccgaacaa atgcgagggg aagggcgcta ctggagagct tcgccgcact      1680
     tgagctagta ctgctgaact ctggaacaaa accgactttt tctagagccg ggacaagttc      1740
     catcattgac cttacatttg tgagcgctgg actggcttcg ggctccagct gggaggttag      1800
     tgacgcctat atgggtagtg atcatgcggc aataatttgc acgattaagt ccacaaatgg      1860
     cccaccacgc gttccaaaga ccgtggtagg gtacaaagta gaaacgctag acgtggagat      1920
     ggtgcagatg ttgttcgagg acctctctac aaacggatca gcagacgaaa gggcaaaccg      1980
     catcgcagat tacaccaagg tagcctgtga tgcatctatg cagaggaagg ggaaactccc      2040
     atcaaggaaa agaccggcat actggtggaa ccaatccatt gcggaagcca ggaaagaatg      2100
     ccatagagca agacgcgcat accaacgagc aagaggaaga ctcgaattta gggcacttca      2160
     gatatattac agggaaaaaa gacgagccct ggaaaaacta ataaaagaaa gcaaacgcag      2220
     gtgttttaat aatatatgcg aagaaataga ctccaaccct tggggcttcg catataaact      2280
     cgtcacaaaa cggcttcggg catttagtag accgtcgccg acatgcccag tcttcctaaa      2340
     aagggtagta gaaacactat tccctgagca agagggtatg gcgcgtatag cacagatcgt      2400
     agacacgaga agcattaagc tcacaagtcc tgaggaagtc cttgaggttc ttaagacaat      2460
     aaaggacgat aaggcaccgg gacctgatgg aatcccgaat aaagtattaa aaatagccat      2520
     aaaagcaaac acaaaacagt atgttgacat gtataatgca tgcctaacag aaggtgtgtt      2580
     ccctagtcgc tggaaaactc agcggttggt actcatacca aagggggaca aggcagcgga      2640
     ggagccttcc tcgtataggc cactctgtat gctggatacg gtgggcaaaa ttcttgaaag      2700
     aattatccac tcccggctag aaagtgccct tgtcggaacc aacggcctct ctgagatgca      2760
     gtatggtttt cgaaagggac tatctacaat cgatgccatt ggtaaactgt gtgagatcgc      2820
     agacaaagcc attgagggaa aaaggtggtt gtacggcact aagcagtatt gcatagcggc      2880
     aacattggat gttaaaaacg cattcaactc cgctagctgg caccacacac taaatgcact      2940
     aagcaaactt aatgtcccag tgtacataca gcgagtaata gcgagctact tcgaaggtcg      3000
     cctgctcctg tacgaaacag aatcagggca atcgactcac agggtcaccg ggggagtccc      3060
     ccaaggatca gtcctaggcc ctttgttgtg gaatgtcatg tacgacgaga tccttaggat      3120
     cacgatgccc gaaggggcac gactcattgg tttcgcggat gacgtagcca tagtagttac      3180
     ggccaagaaa ctcccagacg cggaaagaat ctgcaatgaa gctgggaaac gagcaagcgc      3240
     atggctcgac tctaagggtc tcgccttggc agctcataaa accgaagcag tcctgataag      3300
     tagcaggcag aaagtggaaa cggccactat taaaattgga gaagccacca taaaatctcg      3360
     cccaagctta aaatacttgg gggtcatgat cgaccaccgg ctttctttca aagagcatct      3420
     agcgtacgct agtggcaagg caggcagaac cgcggcagca atttcgcgaa ttatggcgaa      3480
     cactcgtggg ccgaggcaac caggacgtag attactggtt agcgttgtca catcgacgct      3540
     gatgtacgct gctcccatat gggcccgagc cacaaaaaat gggagttatc tgcaggaggg      3600
     tgattccgta cagagactgt gtgccctgag ggtttgctgt gcgttccgca cggtatccca      3660
     tgacgcggca ctagttattt caggagtaat accgatggac ctgctagcag tggagtcagt      3720
     gggtatccgc gcaggtagca caggggtcga aactgtcgaa tccctacgaa aaaggtgcag      3780
     acaactcacc attgcaaagt ggcaggagag gtgggcaaat agcagcaaag gacgatggac      3840
     gcataagctt atcccagaac tgcagagatg gctgggaagg aagcatggac atgtggactt      3900
     ttacttaacg caactgctga caggacatgg atgctttaaa tactacttga ataggtttaa      3960
     gcatgaacgt tatccgcact gcccactctg cgagtcggat aatgaagacg cagagcacgt      4020
     attttttgtc tgtccgagat ttgaaaatga acgtcgagat ctgagcataa gggttgggag      4080
     gacgccagcc gtttgtaacc tggtggaaat tatgcttgaa tcagaagtaa attggtccgc      4140
     tgtatgtaac atggccacaa taattcttaa aaaactgcgc atcgcagaaa ggctgcgaaa      4200
     ttccaatagg atagtatcct agagagccct tagggcattc cccccccggc gaagtaatac      4260
     ctaacggcag taccgccggg gaagcgggga gggggtggag tttttactgg gttagagtcc      4320
     cagacttcgg taagctagca cagctccgag ttggctttcg atgctttaaa ccaccactaa      4380
     caaaaaaaaa aaaaaaaaaa aa                                               4402
//
ID   R1-2_DBp    repbase;    DNA;    INV; 5614 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 17.05, Created)
DT   16-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5614
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 727-727 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           940..2547
FT                 /product="R1-2_DBp_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSSKNEITPGGSHRSGNPPVGETTARARILEALNNIP
FT                 IIPDKAVPHLAALERNTTSAEELKSAKTGDPFKKSNKMRRSPLFAPQAGSS
FT                 AGTGSPAAVEKETPKRPREMLSPDKDQRAAPPKKNKAGSPPARSEECLTEL
FT                 GTIVNELLSWVTEKNKRHISAMQRSLITRLKDIHSILVGSVPEEHARPAIM
FT                 PKPVCPRCERAGIDTAEKEQQTLPTEVWTQDQAVQTGSIPNSTGPRSAHRD
FT                 SGAKVATANTAARPKPAVANPAADKGSDGEASRRRSEWTKAKPRNPERRRA
FT                 RPDAIVIQAAGMTYSQILSMVTRREDGKLDDLGPCVKKVRKTAKGGLLLEL
FT                 ARKKESSTQALKGCIEEVLGSKAEVRAYSEETKESLVELRGLDALATSEDI
FT                 IGAIAQQAAVDQGALKVKKLRSSYGETQTAIVAFPASLAKAIIAVGKVKVG
FT                 WSVCHMREKEVVARCYRCLGMGHIASACKSSKDRSGCCFRCGDSDHRAATC
FT                 KKDPRCFSCEDKGRKDVRHQTGSRSCPMSAKGGGPRTTGC"
FT   CDS           2590..5514
FT                 /product="R1-2_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MCCRRLRGRRRRHSAPKRATGSDNRWAXDLSGKAAIW
FT                 SCGATGATMHSVHSAEGFVRARIGGAWLYSCYMAPSLTTNEFERMMDCLGN
FT                 DIRGRSDVLVAGDFNAWAQDWGCPRTNARGRVVRETFASLDLVLLNEGNQH
FT                 TFSRAGAGSIIDLTFASPSLATGANWRISGSFTASDHEAILCSIGSPQERP
FT                 RDPNPRGYRVGTLQARNFTEAARDIGNVLPSGANEMADTLAAKLEAACMAS
FT                 MQRRSRYRRNHAPVYWWSXEIGSIRAECMRARRLMQRARGSDAFEERHXAF
FT                 KDRRKALKVAIRDSKRKCFLELCDSAEENPWGNAYRIVVKRLRAGSQSPTD
FT                 PNVLRTIVQALFPAGNQVTQLPTPPADNEAAEEVTEEEVLAIGRGLAPNKA
FT                 PGPDSVPNRALKLALALQPGSFAELYNKCIREGTFPTRWKVQKLLLLLKPG
FT                 KPREEASSYRPICLLDTTGKVFERVIAARLEAAIEEAGGLSPKQYGFRKGR
FT                 STVDAIAEVVGIARNAIAGTRWKGGSKQYCLIVTLDIRNAFNTADWSKTLA
FT                 ALRRFNVPSAIMNVVSSYFSCRVLLVDTDMGTESYDVTAGVPQGSVLGPLL
FT                 WNAMYDGILRLQLPAGCDVVGFADDVALVIVAKHREEAERAANKAIETMEM
FT                 WLQNAGLSLAPQKTEAVLVSSRKVLETATIRVGGMAITSQRAIKYLGVMID
FT                 ARLSFREHLDYIQGKAAATTRGLARILLNTRGPKQNRRRLLVSVASAQILY
FT                 AAPIWAEAMNTPSYRRGVDAVYRLGAIRVASGFRTVSDDAILVIAGMVPLK
FT                 ERARELKELKETRARNEGAGGTPNTAAREDAKERSLTAWQDCWDASTKGRW
FT                 THTLIPNLRRWVLRSHGQVDFYLTQVLSGHGCFRQYLKRFGHAEDDWCPEC
FT                 GSSIVEDARHVVFECRRFARERHRLETTAGRSIHPGNLVEVMLENQMLWDA
FT                 VASFAAALMQRLRSIEQERR"
XX
SQ   Sequence 5614 BP; 1404 A; 1541 C; 1787 G; 874 T; 8 other;
     ggaagtgcgg gtcgaagaaa gcggacgtgc cgcgcgggcg ctcccgagtg acgcggccaa        60
     acgctgcaga atctagaaaa ggagtgggta aatgggtgac cggacagctg gggacggact       120
     cacctgccga gcgaaccata acactccctg gataggtcac tagatggcct ccgcgaagat       180
     tcggatgagc cgccaaccgc cgaggtaaga ggcgcgaaga gagctttctc ttctaggaac       240
     tctctttgcg acacctttct cctgagttga ccgagctaag caaacgtggc tgcccccacc       300
     agaattgcgc aggtcatggc agctgatcgt aaccagctgg cgggcagtgt tgggaaacgc       360
     cctaacagtg tctgccggta gagggcgcta gacccggacc aagggcacca gggctgccga       420
     acgtcgcaat gacgcgacta caggagcccg ctagaggkcg ccagcgaccc aaggcaaags       480
     aaaagggtag catacctttc agggctgctg cctcaggtcc tttgaccaac ataaagcgga       540
     aggggctaga aaactctggc ctgccatgag gtgacaaagg tcatggagct gaccaactgc       600
     caacccctcc gctatggcgg ttcacccaca aaaggggctc tggcgaccga gcaggagcgg       660
     tataactccc atcggtcccg ccaggaggaa attccaggcg caccgatgga aggcagtgct       720
     gaaaccccca accacagcat gcattagcca tgctctatcc actttccccc cccccaaccc       780
     cccatcgaag aaggctagcg ctcagctgag ccggagaaaa aaccctcgca gcgtctgtcc       840
     cacattgggc ggctgcgagg tctgcgtctg taccaaagtg gtcggcagct tagacacctg       900
     gcagcaggta taaaatgcgc aacccccccc aattttggaa tgtcgtcgaa aaacgaaatt       960
     actccaggtg gcagccacag aagtggaaat ccacccgtgg gagagaccac ggctagggca      1020
     aggattctgg aggccctaaa caacatccca atcatacctg acaaggcggt gcctcacttg      1080
     gccgccctgg aaaggaacac tacaagtgca gaagagctaa agagtgccaa aacgggtgac      1140
     ccgttcaaaa agagcaacaa aatgcggcgc tcgccgctat tcgcgccaca ggctggcagc      1200
     tcagccggca ctggcagccc agcagcggta gagaaggaaa cgccaaagag gccacgggag      1260
     atgcttagcc cggacaagga ccagagggcg gctcccccga agaaaaataa ggctggcagc      1320
     ccgccggcaa gaagcgaaga atgcctgacg gagctgggca cgatagtgaa cgagctgcta      1380
     tcgtgggtca cggaaaaaaa taagaggcat atttccgcaa tgcaaaggag cctgataacc      1440
     agactgaagg acatccactc cattctggtc ggaagtgttc cggaggagca tgcgcgaccg      1500
     gccatcatgc ccaagccagt gtgccccaga tgcgagaggg ccggcatcga taccgcggag      1560
     aaggagcagc agacccttcc gacggaggtc tggacccagg accaggctgt gcagaccggc      1620
     agcatcccta acagcacggg ccccaggagt gcacaccggg actcgggggc caaagtagca      1680
     acggccaaca cggcggcaag gcccaagcca gcagttgcaa acccggctgc cgacaaagga      1740
     agcgacggcg aagcaagcag gagaaggtct gaatggacga aggccaagcc tagaaatccc      1800
     gagaggagac gagccagacc cgacgccata gtgatccaag cagcaggcat gacgtacagt      1860
     cagatcctaa gcatggtaac tcgcagggag gacgggaagc tagacgacct tggcccttgc      1920
     gtcaagaaag tgaggaagac agccaagggc gggctgctac tggaattggc caggaagaag      1980
     gagagctcca cacaggccct taaaggttgc atcgaggagg tcctagggag caaggcagag      2040
     gtgcgggcgt actcggagga gaccaaggag tcactcgtcg agctacgagg actcgacgca      2100
     ctagctactt cggaggacat catcggggct atcgcgcagc aggcagcggt ggaccaaggc      2160
     gccttgaaag tmaagaagct gagaagcagt tatggcgaga cgcagaccgc tatcgtggct      2220
     ttccccgcga gccttgccaa ggccatcatt gctgtgggca aggtgaaggt tgggtggtca      2280
     gtatgccata tgagggaaaa ggaggtcgtg gctcgctgct acaggtgtct tgggatgggg      2340
     cacatcgcaa gcgcttgcaa gagctcgaag gacaggagcg gctgttgctt ccgctgcgga      2400
     gactcggacc acagggcggc cacctgcaaa aaggaccctc gatgcttctc gtgcgaagat      2460
     aagggccgga aggatgtgag gcatcagact ggaagcagaa gttgccccat gtcagcgaaa      2520
     ggaggtggac ctaggacgac agggtgctag tgcttcagct gaacctgaac cactgcaggg      2580
     cggcccaaga tgtgctgtcg cagactgcga gggagacgaa ggcgacatag cgctcctaag      2640
     cgagccactg gctcagacaa ccgctgggca gwtgacctat cggggaaggc cgccatctgg      2700
     agctgcggcg caaccggcgc gacaatgcac tcagtgcaca gtgcggaggg attcgtaagg      2760
     gctcggatag gtggggcatg gctttacagc tgctacatgg cacctagcct aaccaccaat      2820
     gagtttgagc gcatgatgga ctgcctagga aatgatatca gaggccgttc tgacgtcctt      2880
     gtagcagggg acttcaacgc gtgggcgcag gactggggct gcccgaggac gaatgcgaga      2940
     gggagagtgg taagagaaac ctttgcctca ctcgatctcg tactgctgaa cgaaggaaac      3000
     cagcacacct tcagcagagc cggagcagga tccatcatag acctgacgtt cgcaagcccc      3060
     tcgctagcga ctggcgctaa ctggaggata agcggcagct ttacggccag cgaccacgaa      3120
     gcaatattgt gctcaattgg tagccctcaa gaacgaccga gggatccgaa tccacgaggc      3180
     tacagagtcg gtacgctcca ggcgaggaac ttcaccgagg cagcgcgcga catcggcaac      3240
     gtcttaccaa gcggagccaa cgaaatggct gataccctgg ctgctaagct ggaggcagcg      3300
     tgcatggcga gcatgcagcg gagaagccgc taccgcagaa accacgctcc cgtttactgg      3360
     tggagcgasg agattggctc catccgagct gagtgcatga gagcaaggag gcttatgcag      3420
     cgagcgagag gcagcgacgc ctttgaggag cggcaccwag ccttcaagga ccggcgcaaa      3480
     gcattgaagg tggccatccg agacagcaaa aggaaatgct tcctggagtt gtgcgactcg      3540
     gcggaggaaa atccatgggg caacgcgtac cggatagtgg tgaagaggct gcgcgcagga      3600
     agccagtccc ccacggaccc gaacgtacta aggaccatag tgcaagcact gttcccagcc      3660
     ggcaaccagg tcacccagct tcccaccccc ccagcagaca atgaagcggc tgaggaggta      3720
     acggaagagg aagtcctggc catagggaga ggcctggccc cgaacaaagc acccggcccg      3780
     gactcggttc ctaaccgagc cctgaagctg gctctagctc tgcagccggg cagctttgcg      3840
     gagctctaca ataaatgtat ccgcgaaggc acttttccca ccaggtggaa ggtacagaag      3900
     ctcctgctgc tcctcaaacc agggaaacca agggaggagg cgtcgtccta taggccaatc      3960
     tgcctgctgg acacaacggg caaggtcttc gagagggtga tcgcggcgag gctcgaagct      4020
     gccatagagg aggcgggagg gctgtctccc aagcagtatg ggttccggaa gggaaggtct      4080
     acggtggatg ccatagcaga ggtggtcggc attgctcgca acgcaatagc gggaaccagg      4140
     tggaaaggtg gctccaagca atactgcctg atagtcaccc tggacatcag gaacgccttc      4200
     aacacggcgg actggagcaa aacactggca gccctaaggc ggttcaacgt tcccagtgcc      4260
     ataatgaacg tcgtcagtag ctactttagc tgcagagtgc tactggtcga cacggacatg      4320
     ggcacggagt cctacgacgt tacggcgggt gtgccccaag gatcggtcct aggaccgctg      4380
     ctgtggaacg ccatgtatga cgggatcctg aggctgcagc tcccagcggg atgcgacgtc      4440
     gtcggcttcg cagacgacgt agcgttggtg atwgtggcca agcacaggga ggaagcggag      4500
     agagcggcga acaaggcnat cgagacaatg gagatgtggc tccaaaatgc cggtctaagc      4560
     ctagccccgc aaaagaccga agcggtgctg gtcagcagcc gcaaggtgct ggaaacggcg      4620
     acaatccggg ttggtggaat ggccataacc tcccagcggg ccataaaata cctgggcgtg      4680
     atgatcgacg cccggctctc cttccgcgag caccttgatt atatccaggg caaggctgca      4740
     gccactacca ggggcctcgc caggatcctt ctaaacacca gaggccccaa gcagaacagg      4800
     agaaggctcc tcgtgagcgt tgcctcggcg caaattttgt atgcagcgcc catctgggct      4860
     gaggcgatga atacgcccag ctacaggaga ggggtagatg cagtgtacag gctgggtgct      4920
     ataagagtcg cgtccggctt caggacagtc tccgacgacg ccattctggt cattgcgggg      4980
     atggtcccgc tgaaggagcg cgctcgagag ctcaaggagc ttaaggaaac ccgtgctcgc      5040
     aatgagggtg ccggcggcac ccccaataca gctgcaaggg aggacgccaa ggagaggtcg      5100
     ctcacagcct ggcaggattg ctgggacgcg tcgacgaagg gacgatggac acacaccctc      5160
     attcctaacc ttagaaggtg ggtgctgcga agccacgggc aggtcgactt ttacctgacc      5220
     caggtcttga gtggacatgg ctgcttccgg caatacctga agcgttttgg ccacgcggag      5280
     gatgactggt gcccggagtg cgggagttcg atagtcgagg acgccaggca cgttgtcttt      5340
     gagtgccgcc ggtttgcacg agagcgccac cgactggaga cgacggcggg ccgatcaatc      5400
     cacccgggaa acctagtgga ggtaatgctg gagaaccaga tgctctggga cgcagtagca      5460
     tcttttgctg cagcgttaat gcagaggctc aggagcatcg agcaggagag gcggtagggt      5520
     ggagagttgg ggcctgtggc gggcgaagca atgcctagcg gtcgtcccgc ccgttctcaa      5580
     gccctcacta tccatcatcc atgaacaacc acaa                                  5614
//
ID   R1-2_DEl    repbase;    DNA;    INV; 5188 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5188
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 564-564 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Several copies are flanked by (CA)n
CC   microsatellites, like Waldo elements.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..2020
FT                 /product="R1-2_DEl_1p"
FT                 /translation="MDATAEIGCLQAFDKRPKVGRTPPPSAPPVLAGDMFP
FT                 FERAGESETPKRGRDAMSPSSPEKQAKKSKCQKPPVELVLDLGNXIDGLIS
FT                 TCIEKKPAVRHINQSMKDTLMSIKEIQLELSERLEEVEAAKGRAATQTTPG
FT                 LASYSQVARKANLPGPEATKPPVLENRARPRMSGQTTQRNADKPIRRVRPD
FT                 ALVIAGAEGHSYSEILNMVTRRDDNELEEVRKNVRRIKRTAKGELLLELDG
FT                 SARSDTQAIKEDIGRVLGDHARVRAIVEEIHLEIRDLDDLSTKEEVAAAVS
FT                 AATGHQVDASRVKALRSAYAGTKVAVLGLVPQIAAKLLAEGKVKVGWSNCR
FT                 VRERSAERRCYKCLEFGHIAARCKSGVDRSACCLKCGKPGHKVANCSQEAN
FT                 CFLCVGARKTAVNHIAGSRRCPMSKKPSEK"
FT   CDS           1990..5001
FT                 /product="R1-2_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPYEQKTVRKVKILQVNINHCEAAHDLLKQTVREIQA
FT                 DVAIISEPYKKTPGPDYVLDTTKSAAILTIGSSRPQHLRAGSFFIRATVNE
FT                 VAIYSCYLPPRLSLQEFAAVLDELVDDARGRRNVIIAGDFNAWAVEWGSVC
FT                 TNSRGRTLLEAIASLDVALLNSGSEHTFSRAGAGSVVDLTFISSSLFSQAR
FT                 WRLSETYTASDHKAIICDIACGRPATTVPTNRRFNPKTFQEDAFLRGWRDP
FT                 ETGEHAESSSARLMGAMVTACKASMRETRSHHRNLEPVFWWTGEIAEARSD
FT                 CLRARRRQQRARGRPNIELRRLEYAESRRTLKRLIKQSKKKCFLELCDSAE
FT                 QDPWGSAYKVVVKKMGQVKPLGAGEASHMKTIVEHLFPTVTSVPQRAYAEP
FT                 ADTSPIRIHPDEIKKVARDMPXGKAPGPDGIPDTAVKLAMTEHPEAFANVF
FT                 NQCLAENTFPERWKIQKLVLLPKPNKVPEDPSSYRPICLIDHAGKALERCI
FT                 SHRLQAAISASGDLSPMQFGFRKAKSTIDAISALKGTASKAIEGTRWRGGS
FT                 KEYCLVVTLDIKNAFNSARWDITLEALHQLGVPESLVGIVQSYFSDRTLLY
FT                 DTNRGVMEHKITCGVPQGSVLGPLLWNAMYDGVLRLALPGRSKVIGFADDI
FT                 AIVIVAKTLQDAERLGNDAVAIIEEWLLAVGLNIAHHKTEAVLISSRKEVE
FT                 TAKIQVGGCTITSTRAIRYLGVMIDTRLSFREHLAEANKKAANVARALSRI
FT                 MLNTRGPKQGRRLLLQSVTRSTMLYAAPIWAEAVETQSYRKDLESTYRLCA
FT                 LRVCSGFRTVSDDAALVISGMIPIDLLAVEAKEIHEDIANLGRQCTPSQRR
FT                 EIKAKARGKSLDAWQTRWQQSTKGRWTHRVIPDIKKWMQRPKGEVNFWLTQ
FT                 ILSGHGCFRSYLTRFGHDDDPSCPQCGVEETAEHIIFTCPRFDRDRDEFMG
FT                 ETRDPTALGDRMISDEVFWGQMSNFAAVAMKALRTLERQRDRVRRGTSS"
XX
SQ   Sequence 5188 BP; 1440 A; 1348 C; 1458 G; 938 T; 4 other;
     aggagagtga gagtgagtca agtgcgcgaa cgtttttcaa atcagctctt ccggaaatct        60
     tgtccagctc caaaattcca gctgcaaaaa aggaaagctg tgaattcttc gcgatctgac       120
     aacttacgca accagcacag ggtgagatcc actaagccac agccgcaaac accccttgtg       180
     gaaaggcgct ttattttatc gcaccccaag cacccctctg ctgggcggag gaggcagggc       240
     caggggggaa gtcccgcgca ttccacaaca aagctatttg ttgttgtttt tccaccgtcg       300
     attgttttcc tttcctgctt tcccaaacca gcaaacgatc gaagcaaatc agctgatagt       360
     gctgagaaac tccgagcaga acccagctga tcgcggccag tgctgccatt gggtcagtgc       420
     tgccattggg tcagtgctgc catttggaag cacctgcagc gccttcgatt agtctcgcag       480
     ctccgagctt ctgtmagcgc atctgctgaa tttaaaaaaa tacgtcaggc aactagagga       540
     aaaggcaagg accgcattgc ctcccaaccc caccgcgcag cggcctctgg caaaaagggg       600
     ctctggggac cgatcagggg cggtgaaacc cccatcgggc gccggaagga aatttctcgg       660
     ccaccggggg agctataccg attcgtatta ccaattaagg ggtcgaaggc agggttagcg       720
     ggaagaggcg caacaacgag gccttccgat ggacgccacg gcggaaatcg gctgcctcca       780
     ggcgttcgac aagcgaccca aggttggtcg aacgccccca ccatcagcgc cgccggtttt       840
     ggcgggggac atgttcccat ttgagcgggc tggcgaaagc gagacgccaa aaaggggcag       900
     ggatgctatg agcccttcaa gccccgagaa gcaggcaaag aaatcaaagt gccagaagcc       960
     ccccgtcgag ctagtgctcg atttgggaaa tmtgatagac ggactgattt caacgtgcat      1020
     agaaaagaag ccggcagttc gccacataaa tcagagcatg aaggataccc taatgagcat      1080
     caaggagatc cagctagagc ttagcgaaag attggaggag gtagaggctg caaaagggcg      1140
     cgcggccacg caaacaacgc cgggtttggc gtcatacagc caagtggcta ggaaggcaaa      1200
     cctaccaggg ccggaggcaa caaagccacc cgtgctggaa aatagggcgc gaccgagaat      1260
     gtccgggcag acgacccagc gcaatgcgga taagcctatc aggagagtcc gccctgacgc      1320
     ccttgttata gctggggcag aaggccactc atacagcgaa atcctaaata tggtaacgag      1380
     gagagacgac aacgagctgg aggaagtccg taagaatgtg cgcagaataa aacgcacggc      1440
     caagggagag ctgcttctgg aactggacgg gtccgcaagg agcgacacgc aagccatcaa      1500
     ggaagatatt ggccgagtcc tcggcgacca tgctcgcgta cgagcaattg tggaggaaat      1560
     ccacttggaa atacgcgacc tagacgacct gtccaccaaa gaggaggtag cagcagccgt      1620
     atctgcggca acaggccacc aagtggatgc ctcacgggtc aaagcgcttc gctcagccta      1680
     tgcgggcaca aaagtggccg ttctcggact ggtgccacaa atagcagcaa aacttctcgc      1740
     agaggggaaa gtaaaggtag gctggtccaa ctgccgggtt cgggaaagat cggccgaacg      1800
     gcgctgttat aagtgtctgg agttcgggca tatagcggcc cggtgcaaga gcggagtaga      1860
     tcgcagcgcc tgttgtctaa agtgcggcaa accggggcat aaggtagcaa actgctcgca      1920
     agaagcaaac tgctttctat gcgttggcgc taggaagaca gcggttaacc acatagcagg      1980
     tagcaggaga tgccctatga gcaaaaaacc gtcagaaaag tgaagatcct gcaagtcaac      2040
     atcaaccact gcgaagccgc gcatgatcta ctaaagcaga ctgtgcggga aatccaagcc      2100
     gatgtggcga taatcagcga gccgtacaaa aagactcccg ggccggacta tgtactggat      2160
     actacgaagt ctgcggcgat cttgacgatt gggtcatccc ggccacagca cttgmgagcc      2220
     ggttcgtttt tcattcgagc tacggtgaac gaggtcgcaa tctacagctg ctacctgcca      2280
     ccacgcctct ctctccagga gttcgcggca gttctggatg aactggtgga cgacgcaagg      2340
     ggaaggcgaa acgttatcat tgctggcgac tttaacgcgt gggccgtgga gtgggggtca      2400
     gtctgcacga acagcagagg gagaacactg cttgaagcca ttgcgtcact tgacgtagct      2460
     ctactaaatt ccggatcgga gcacacattt agcagagcag gagccggctc cgttgtggac      2520
     cttacattca tcagcagctc acttttctcg caagcccgct ggcgcctcag tgaaacctac      2580
     actgcaagcg accacaaggc catcatctgc gacatagcat gcggtcggcc agctactacg      2640
     gtcccaacaa acagacgctt taacccaaag acgttccagg aggacgcgtt tctcagagga      2700
     tggagagatc ccgaaactgg tgaacacgcg gagagcagct cggcgaggct tatgggagcc      2760
     atggtgacgg catgcaaagc cagcatgagg gaaacaagga gccaccatcg gaacctagaa      2820
     ccagtcttct ggtggactgg ggaaatcgcg gaagcgcgca gcgactgcct gagggccaga      2880
     aggcggcagc agagggcgag aggtcgccca aatatcgagc ttaggaggct ggagtacgcc      2940
     gagagccgca ggactctaaa aaggctcatt aagcaatcca agaagaagtg tttcctggaa      3000
     ctttgcgact cagctgagca ggacccgtgg ggttcagcct acaaagttgt agtcaaaaag      3060
     atgggccagg taaagcccct cggcgccgga gaagcttccc acatgaagac gatcgtagag      3120
     cacctatttc caacagtaac ctcagttcct cagcgcgcgt acgcagaacc tgcagacaca      3180
     tcaccgatca gaatccatcc ggatgaaatc aagaaagttg ccagggatat gccckcaggg      3240
     aaagcaccgg gtccggacgg aatcccagat actgctgtga agctagccat gaccgagcac      3300
     ccagaagctt tcgcaaacgt cttcaaccag tgtcttgcgg aaaacacctt cccggagcgg      3360
     tggaagattc aaaagctggt tctgctacct aagccgaaca aagtaccgga ggacccgtct      3420
     tcatacaggc caatatgcct gattgaccac gcaggcaagg cactggaacg atgcatcagt      3480
     cacagactgc aagcggcaat ctcagcatcc ggggatctgt cacccatgca gttcggcttc      3540
     agaaaggcga aatcaaccat tgacgcgatc tctgcactta agggcactgc atcgaaggcg      3600
     atagaaggaa cgagatggcg gggaggcagc aaggagtact gcctagttgt gaccctggac      3660
     atcaaaaacg ccttcaattc ggcacgctgg gacattaccc tggaagcact ccaccaactt      3720
     ggcgtaccgg agagcttggt aggcattgta cagtcctact ttagcgatcg caccctactc      3780
     tatgacacaa atagaggggt gatggaacac aagatcacct gtggagttcc ccaagggtct      3840
     gtactgggac cgctgctctg gaacgccatg tatgacggcg tcttaaggct ggcgttaccg      3900
     ggaagatcga aggtgatagg ctttgcggac gatatagcca tcgttattgt ggccaaaaca      3960
     ctgcaagacg cagagcgtct tggaaacgat gcagtggcaa tcatcgagga gtggctctta      4020
     gcggtagggc tcaatatagc gcaccacaaa actgaggcag tgctcatatc cagccgtaag      4080
     gaagtagaga cagcgaaaat tcaagtcggt ggctgcacga taacatcaac cagagctata      4140
     cggtacctgg gagtcatgat agacacaaga ctgtccttca gggaacacct cgcggaagca      4200
     aacaaaaagg ccgcaaacgt cgctagagca ctatcaagaa taatgctgaa cacaaggggt      4260
     ccaaaacaag ggcgcagact actccttcaa tcggttactc ggtcgacaat gttgtatgcc      4320
     gccccaatat gggccgaagc agtcgaaacg cagtcgtaca ggaaggatct cgaatctacc      4380
     tatagactct gtgctctgag agtctgctcc ggattccgca cagtatccga tgacgcagct      4440
     ctagtcatct cgggaatgat ccccatcgat ttgttggcag tcgaggctaa ggagatccac      4500
     gaggatatcg ccaatctggg aaggcagtgc actccctcac agaggcggga aattaaggcg      4560
     aaggcaagag gaaaaagcct agatgcgtgg caaactcgtt ggcagcaatc aaccaaggga      4620
     cgctggaccc atcgagttat accagacatc aaaaagtgga tgcaaagacc aaaaggagag      4680
     gtaaacttct ggctgaccca gatactcagc gggcatggtt gctttaggag ctacctaacc      4740
     aggtttggcc acgacgatga ccctagctgc ccgcaatgcg gtgttgagga aacggcggag      4800
     cacatcatct tcacctgtcc acggtttgac cgcgacaggg atgaattcat gggcgagacc      4860
     agggacccga cagcgctggg agaccgtatg atctcggacg aggtgttctg gggccaaatg      4920
     agtaacttcg ctgcggtagc gatgaaagct ctacggaccc tagagaggca gcgcgaccga      4980
     gtgcgacgag ggacttcaag ctgaacaacg ccacagagca aatcctgatc ctgcgaagca      5040
     aagccacgag gtagtaccgc agggttataa ggaataaacc aactcacagc tatatctatt      5100
     caccctactt tatctctatt acctctcccc taatctttgt aaataccata ttctgacaat      5160
     aaaaccaact gaataaaaaa aaaaaaaa                                         5188
//
ID   R1-2_DEu    repbase;    DNA;    INV; 5211 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-5211
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 959-959 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           650..2089
FT                 /product="R1-2_DEu_1p"
FT                 /translation="MGGRGPGAQHLGASLGAGPTNNGGTPANKGLQAPPNT
FT                 DGFHTPLSSLPDWANMGADPFKKSSVMARSPEHKVEGSGKQPSTPPVAGKD
FT                 SPKAEEEQGDVLVQLTSLGSKTRELKKLMDGKRSITNPMREIVDEIDYLQR
FT                 EVLSAVQSMIEEQGKAKKAVEKTCAEVLASGKRPRGQETWKTAALPAKKAM
FT                 HKAPANEASQGGNKGKHAMAESTSNPQEPVKKPEEWKQVKQKARKPKVRPP
FT                 RNDAIVIATSTGGSYADILKTVRTEPQLKELGQAVQAVRRTAKGELLILLN
FT                 KVSDPKTAELQTTMKAVLGRNVDVRALTETMLIEVKDIDEITDKTDVLCAV
FT                 KSQFDVELPESAVVGLRAAYGGTQTATLRVMPDIGRRLLEKGKIRLGWTWC
FT                 RVRPKITPKRCFKCMEFNHIAGNCRNQEDCSKCCYNCGAKEHQARGCKAKA
FT                 CCMLCKRKKEKDCEHPTMSGKCPYFKKAMQGLRGK"
FT   CDS           2089..5064
FT                 /product="R1-2_DEu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKFLQINLNHCEVAQSLLEQSVTEQNVDMALISEQYR
FT                 NKNSGEWLANNSKKSAIWSCGNPMRQISRKKSGNCFARAHVNGIAFYSCYL
FT                 PPSLTLPQAITALEEIAEDARENRPTVIAGDFNAWASEWGSPRTNARGKAL
FT                 LESFAALDLVLLNSGTKPTFSRAGTNSIIDLTFVSAGLAPGCSWEVSDIYM
FT                 GSDHAAIICTIKSRNSPTRVPKTVSGYKVETLDAEMIQMLFEDLSTSGSAE
FT                 ERANHIADYTRLACDASMQEKRKNPSKRRPAYWWNRDIAEVRKECHRARRA
FT                 YQRSRGRPEFETLQIDYRERRRALDNAIKESKRRCFNMICDEIDSNPWGFA
FT                 YKLATKRLRVYSRPPPTCPASLRRIVETLFPVQVSTARTPPTGNIASIKPT
FT                 SAEEVLGILEKILDDKAPGPDGVPNKVLKIAIRANTKEYVDMYNACLTEGV
FT                 FPRRWKTQRLVLIPKGDKPVEEPSSYRPLCMLDTVGKILERIIHSRLEGAL
FT                 AETNGLSEMQYGFRKGLSTIDAVGKLCEIADKAIEGKRWLYGNKQYCIAAT
FT                 LDVKNAFNSASWHHTLNALRNLSVPAYIQNIISSYFEDRLLLYETESGQAT
FT                 HMVTGGVPQGSVLGPLLWNVMYDGILRIAMPEGAQLIGFADDVAIVVTAKK
FT                 LPDAEEICNEAGKRASAWLDDKGLALAAHKTEAVLISSRQKVETATIRIGE
FT                 AIIKSSPSLKYLGVMIDHRLSFKDHLAYASGKAGRTAAAISRIMANTRGPR
FT                 QPGRRLLVSVVTSTLMYAAPIWARATKNGSYRQDGDSVQRLCALRVCCAFR
FT                 TVSYDAAMVIAGIIPIDLLAEESANIRAGSTGVATAESLRKRCRELTISKW
FT                 QERWVNSSKGRWTYKLIPDLQRWLGRKHGHVDYYLTQLLTGHGCFKHYLNR
FT                 FKHERYPHCPLCESDNEDAEHVFFVCPRFENERLDLSIRVGRTPAACNLVE
FT                 IMLESEVNWSAVSNMATIVLKKLRIAERLRNSNRIES"
XX
SQ   Sequence 5211 BP; 1567 A; 1242 C; 1445 G; 957 T; 0 other;
     ggagagagag ttgagagagt tttgagtgcg gtcgcgtttt caaatcgctc cgcttattta        60
     tccaagttct caccgtaaag gaaaagtgca gccggccatc cggcgtggag tatctggaca       120
     cgcatctgga catcagctgg tggccagaag accgtggacg acacctggga acagcccggg       180
     aactaatccc caacaggttt gacgaccagg caggggccgg tcgtaggcga gggaggagag       240
     gcatccctgc ctcttcttgt ttcccactcg ttggttggca tagttgctgc cataattttc       300
     accgcgcttt tctttttttc agtaaacact aaatcagtgg tggaaagcgc ttgcgcgacc       360
     agctgattct agtgcgcgaa aaagacggcg ggtgccatag cagtaagctt tggataggtt       420
     gcatccaagc ggataagtgc gtgctgtagc acgcaggaaa gtttagggcg gttcttttat       480
     tttaaaaata gtaaagttct ctaaaatagt aacgtccgat cgaagtccag caggatattg       540
     cgggtaggaa aatcctgcgc ggctcttttc cttcctcaac atagtaacgt ccgattgaag       600
     acaaggaggt tactgcgggc aaaggcccaa acttcctgca ggcggagaaa tgggaggcag       660
     gggaccgggg gcacaacacc tgggcgctag cctaggagct gggccaacca ataacggagg       720
     cacgcctgca aacaaaggac tgcaggcgcc gcctaatacc gacggctttc acacgccatt       780
     gtccagtcta ccagactggg ccaacatggg agctgaccca ttcaaaaaaa gcagtgtaat       840
     ggcgagatcg ccggaacata aggtggaggg cagtggcaag cagcctagta cccccccagt       900
     agcaggaaaa gacagcccaa aagcggaaga ggagcaaggg gatgtgttgg tacagctgac       960
     cagcctggga tcgaagacca gggagttgaa gaaactaatg gacggaaagc gatccatcac      1020
     caatccaatg agggagatag tcgatgaaat tgactacctt cagagagaag tcctatcggc      1080
     ggtacaaagc atgatcgaag agcagggaaa agccaagaag gctgtggaaa aaacctgtgc      1140
     agaagtactc gcgagcggca agagacccag agggcaagaa acctggaaaa cggcagcact      1200
     tccagcaaaa aaggcgatgc acaaggcgcc ggcaaacgaa gccagccaag gaggaaataa      1260
     ggggaaacat gctatggcag agagcaccag caatccccaa gaacctgtga agaaaccaga      1320
     agagtggaaa caggtgaaac agaaggcacg gaagcccaag gtgcgaccac cacggaacga      1380
     tgcgatagtt atcgcaacct ccacaggtgg atcctatgcg gatatcctga aaacagttag      1440
     gacagagcct caactgaagg agctaggaca agctgtacag gccgtgaggc gcacagctaa      1500
     aggggaacta ttaatcctcc taaacaaggt ctccgaccct aaaaccgccg aactccagac      1560
     cacaatgaaa gcggtcctgg gtagaaatgt cgacgtcaga gcgctgactg agacaatgtt      1620
     gatcgaggtg aaggacatag acgagatcac cgacaagacg gacgtcctat gcgcggttaa      1680
     atcccagttt gatgtggaac tgccagaatc cgcggtggta ggattaaggg cggcatacgg      1740
     aggcacccaa accgccacac taagagtaat gcctgacata ggaagacggc tcctggagaa      1800
     gggcaaaatc aggctaggat ggacctggtg cagagtccgc ccaaagataa cacccaaaag      1860
     gtgctttaag tgtatggagt ttaaccatat agcagggaac tgcaggaacc aggaggactg      1920
     ttcgaaatgc tgctacaatt gcggcgcaaa ggagcaccaa gccagaggct gcaaagcaaa      1980
     ggcctgttgc atgctctgca agcgcaaaaa ggagaaagac tgcgaacacc caacaatgag      2040
     tgggaaatgc ccgtacttca agaaggccat gcaaggactt aggggcaaat gaagttcctg      2100
     cagataaacc taaaccactg cgaggttgcc cagtcgttgc tagagcaaag tgtcaccgaa      2160
     caaaacgtag acatggcact cataagcgag caatacagga ataaaaactc cggagaatgg      2220
     ctagcgaata atagcaaaaa atcggcaata tggagctgcg gaaacccaat gcgccagatt      2280
     agcaggaaga aaagcggaaa ctgcttcgcg agggctcatg tgaatggtat agctttctac      2340
     agctgctacc tgcccccaag ccttaccctt ccacaggcaa taactgcgct cgaagagatt      2400
     gcagaagacg cccgggaaaa ccgtcccacc gtaattgccg gagatttcaa tgcatgggcc      2460
     tcggagtggg gatcaccccg gaccaatgcg aggggaaaag cgctacttga gagcttcgcc      2520
     gcacttgacc tagtactgct taactctgga acgaaaccaa ccttctccag agccggcacc      2580
     aattccatca tcgacctcac atttgtgagc gctggattgg caccgggctg cagctgggag      2640
     gttagtgaca tctacatggg gagtgaccat gcagcaatca tctgcacgat aaagtctaga      2700
     aatagcccaa cacgagttcc aaaaaccgtg tcagggtaca aagtagaaac gctagacgcg      2760
     gagatgatac agatgttgtt cgaggacctc tctacaagcg gctcggctga agaaagggca      2820
     aaccacatag cggactatac caggctagcc tgcgacgcat ctatgcagga aaagaggaaa      2880
     aacccttcaa aaagaagacc cgcatactgg tggaatcgtg acattgcgga agtcagaaaa      2940
     gaatgccaca gggcaagacg tgcgtatcaa cgatcaagag gaaggcccga atttgagacc      3000
     ctacagattg attacaggga aagaagacga gccctggata acgcaataaa agagagcaaa      3060
     cgtaggtgct ttaacatgat atgtgatgaa atagactcca acccatgggg cttcgcatat      3120
     aaactcgcca ctaaacggct tcgggtatac agcaggccac cgccgacatg cccagccagt      3180
     ctaagaagga tagtggaaac actattcccc gtgcaagtga gcacggcgcg aacgccacct      3240
     accgggaata tagcgagcat aaagcccaca agtgccgaag aagtcctcgg aatactagag      3300
     aaaatattgg atgacaaggc accgggacca gatggagttc cgaataaagt cctcaaaatt      3360
     gcaattaggg caaatacaaa agagtacgtt gatatgtata acgcttgcct aacggaagga      3420
     gtgttcccca gacgctggaa aacacagcgg ttggtactca taccaaaggg ggacaaaccg      3480
     gtggaggaac cttcctcgta caggccgcta tgtatgctgg atacggtggg caaaattctg      3540
     gaaagaataa tccactcccg gctggagggt gcccttgccg aaaccaacgg cctctccgag      3600
     atgcagtacg gctttcggaa ggggctatca accatcgacg ccgtcggcaa actgtgcgaa      3660
     atcgctgata aggccattga gggaaaaagg tggttgtacg gcaataagca gtattgcata      3720
     gcggcaactc tggatgttaa aaatgcattc aactcggcta gctggcatca tacactaaat      3780
     gcactgagga acctaagcgt cccagcgtat atacagaata taatatcgag ctatttcgaa      3840
     gaccgcctgc tactgtacga aacagagtcc gggcaggcaa ctcacatggt caccggggga      3900
     gttccccaag gatcagtcct tggccctctg ttgtggaacg tcatgtacga tgggattctt      3960
     aggatcgcga tgccggaagg ggcacaactg attggctttg cggatgacgt agccatagtg      4020
     gtaacggcta aaaaactccc agacgcggag gaaatctgca acgaagctgg gaaacgagca      4080
     agcgcatggc tcgacgacaa gggtcttgcc ctggcagcgc acaagaccga ggcagtccta      4140
     ataagtagca ggcagaaagt ggagacggct acgatacgaa tcggagaagc aataatcaag      4200
     tcaagcccaa gtctaaagta cctaggagtc atgatcgacc accggctttc ctttaaagac      4260
     catttagcct acgccagtgg gaaggcaggt agaacggcgg ccgctatttc gcgaatcatg      4320
     gcgaacactc ggggaccgag gcaaccagga cgcagactac ttgttagcgt tgtcacatcg      4380
     acgctgatgt atgctgctcc catatgggcc cgagccacaa aaaatggaag ctacaggcag      4440
     gatggcgact ctgtacagag attgtgtgcc ctgcgggtat gctgtgcctt ccgcacggta      4500
     tcctatgacg cggcaatggt aatagcggga atcataccga ttgatctgtt agcagaggaa      4560
     tctgctaata tccgcgcagg tagcacaggg gtcgccaccg ctgaatccct acgcaaaaga      4620
     tgcagagaac tcaccatctc taagtggcaa gagaggtggg taaatagtag caaaggacga      4680
     tggacgtata agctcatccc agatctgcag agatggctgg gacgtaagca tggacatgtg      4740
     gactactact taacgcaact tctgacagga cacggatgct ttaaacacta tctgaatagg      4800
     tttaagcatg aacgctatcc gcactgccca ctctgcgagt cggataacga agacgcagaa      4860
     catgtgtttt ttgtctgtcc gagatttgaa aacgaacgtc tagatctgag cataagggtt      4920
     gggaggacgc cagccgcttg taacctggtg gaaattatgc ttgaatctga agtaaattgg      4980
     tccgctgtaa gcaacatggc cacaatagta ctcaaaaaac tgcgcatcgc agaaagactg      5040
     cgaaattcca ataggataga atcctagaga gccctaaggg cattcccccc cggcgaagta      5100
     atacctaacg gcagtaccgc cggggaagcg gggagggggt ggagttttta ctgggttaga      5160
     gtcccagact tcggcaagct aacccagctc cgagttggct ttcgaggctt t               5211
//
ID   R1-2_DF     repbase;    DNA;    INV; 3845 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3845
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 986-986 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..522
FT                 /product="R1-2_DF_1p"
FT                 /translation="SYHSAIEKALEKMATVNVRTHTVTVQCRGLIPELSTD
FT                 EELLEAIAKLAQVKRPDISSIKSRXDTYGGTQSVYVSLQAGXAKKILDLGH
FT                 IMVGWIRCRITEVKTPKRCYKCWAYDHVANACKEPDRTKLCRRCGTEGHQA
FT                 ARCTNEEKCALCKGTHAAGSAKCPKYQEAVRKIRI"
FT   CDS           522..3008
FT                 /product="R1-2_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRVLQLNTNHCRTAQDLLWQTTAEHKIDIALLTEPYK
FT                 DIESHRWITDTVKQAAIWITGNKTFQQKMTTGGGFVWAKLDGLYYVSCYAP
FT                 PRWSVEEFTSMMTSLELELRGKRPILLTGDFNAWSRTWGSDFTNARGRLVE
FT                 ETAAALDLVLLNAPGVHTFECARGRSIIDLAFADRATANRATWKVEDSIHT
FT                 HSDHKAIIMELSRGAPQAECRATRPKWKKSSFNLEAFKLAWQGTHLQGTTA
FT                 EAIAEEIAHKIEAACNASMTRGRYGGKRKPAYWWTSEIADLRKACIKARRR
FT                 AKRATLRPTFAELHGVYRERKWELKKAIVRSKNRCFREMRDRADVEPWGMA
FT                 YQTVMRKVKGPSAPQPKCPILLEKAVLTLFPPQEETSVEALPTIEPGDVPP
FT                 VTMEEVLSTLRRIKDNKAPGPDGVPNMVFKAAVMETPHIFAHIYSTCLTEG
FT                 TFPSRWKLQRLVLLLKPGKQPDQPSSYRPLCMLDTVGKVFERVICDRLQEY
FT                 LECPTGLSNTQFGFRRARSTVDAIRTVTDIAQNAISGGHRHMSYCAVITLD
FT                 VKNAFNSANWSRILLSLRNLRVPSYLLRIIRSYFRDRILQYETDTGSKTYR
FT                 VTGGVPQGSVLGPTLWNAMYDGVLRLKLPDKANIVGYADDIALVVVDKRLD
FT                 LLEAKCTDAASRIQRWLRNAGLELAAQKTEAVLISARRKKEKMIIAIDGHE
FT                 IVSQEAIKYLGVLIDTRLSFKQHLVGVSGKASAVTRALTRILPNVGGPQGQ
FT                 RRALLSTVADSITMYAAPIWAGAKKSHLRGITQIYRQSALRIGCAYRTVSN
FT                 DAICVIAGKPPVDCWQRSCLVCTASKE"
XX
SQ   Sequence 3845 BP; 1191 A; 919 C; 1005 G; 725 T; 5 other;
     tcttaccact cggcaataga aaaagcgttg gagaaaatgg caacggtaaa tgtcaggact        60
     cacackgtca ctgtccagtg taggggactc attcccgagc tcagcacaga cgaggaactt       120
     cttgaggcga ttgcgaaact ggctcaagtg aaacgaccgg acatatcgtc catcaaaagc       180
     aggmgcgaca catacggcgg cacgcaatcc gtttacgtat cgctgcaggc ggggktcgcg       240
     aagaagatcc tagacctcgg ccacataatg gttggatgga tccgatgccg gataaccgag       300
     gtcaaaacac caaaaaggtg ttacaaatgc tgggcatacg accatgtggc aaacgcgtgt       360
     aaagaaccgg accgcacaaa gctttgcaga cgctgcggca ccgaaggaca ccaagcagcg       420
     agatgcacaa acgaggaaaa atgcgcgtta tgtaaaggga cacatgcagc aggcagcgcg       480
     aaatgtccaa aataccagga ggcagtccgt aaaataagaa tatgagggtg ctacaactga       540
     acaccaacca ctgcagaact gcacaggatc tactatggca aacaacagcg gagcataaaa       600
     tcgacatagc cttactaacg gagccgtaca aagatatcga atcacaccgc tggattacag       660
     atactgtgaa gcaggcggca atctggatca cgggaaacaa aacgttccag cagaagatga       720
     caaccggcgg cggatttgta tgggccaaac tagacggcct ctactatgta agctgttacg       780
     cgcccccaag gtggtctgta gaagaattca caagcatgat gacttctttg gagctggagc       840
     taagaggaaa gaggccgatt ttgcttacag gagacttcaa cgcctggtca agaacctggg       900
     gcagcgactt tacaaatgca agaggtcgtc tagtagagga aactgctgca gcgttggacc       960
     ttgttttact gaatgcgcca ggagtccaca ctttcgaatg cgccagagga agatcgataa      1020
     tcgacctagc cttcgcagat cgagcgaccg caaatcgagc aacctggaag gtggaagact      1080
     caatccatac tcatagcgat cacaaagcta taattatgga gctaagtagg ggagcaccgc      1140
     aagcagagtg cagagcgaca cgaccgaaat ggaaaaaatc ttcctttaat ttggaggcat      1200
     tcaagctagc gtggcagggt acacacctac aaggtaccac agcggaagct attgcagaag      1260
     aaattgctca caaaattgaa gcagcctgca acgcatcaat gacgcgaggg aggtacggtg      1320
     gaaaacggaa accggcatac tggtggacaa gcgagatagc cgatttacgc aaagcttgca      1380
     tcaaggcgcg acggagagca aaacgcgcaa cacttcgacc gacctttgca gaactacatg      1440
     gcgtataccg tgagcggaaa tgggagctaa aaaaagcaat tgtgcggagc aaaaatcgct      1500
     gctttagaga aatgcgggac agagctgacg tcgaaccctg gggtatggca taccaaactg      1560
     tcatgcgaaa ggtgaaagga ccctcagcac cacagccgaa gtgtccaata ctgctagaaa      1620
     aagcggtact tacactcttc ccaccacagg aggaaacaag tgtcgaagct ttgccaacga      1680
     tcgagccagg cgatgtgccg ccggttacaa tggaagaggt gctaagcact ctgcgccgca      1740
     tcaaagacaa caaagcccct ggaccagacg gagtcccaaa catggtattc aaagcagcgg      1800
     taatggaaac gccacacatc ttcgcgcata tctacagcac atgccttaca gaaggaactt      1860
     tcccatctcg gtggaaactt cagcgactgg tgctgttgct gaaacccggc aagcaacccg      1920
     accaaccatc ttcctacaga ccgttgtgta tgctggatac agttggtaaa gtttttgaac      1980
     gcgtgatctg cgatcgcctg caggagtatt tagaatgccc tactgggctc tcaaatactc      2040
     agtttggctt tcgacgagca aggtcaacgg tggatgctat caggacagtg acagacatcg      2100
     cacagaatgc cataagtgga ggacaccggc atatgagtta ctgtgcagtt atcacactcg      2160
     acgtaaagaa tgcgttcaat tcggctaact ggtccaggat tctgctatcg cttagaaacc      2220
     tgagagtacc gagctatcta ctccgcatta tacgaagcta tttccgtgac cgcatactac      2280
     aatatgaaac ggacaccggc tcaaaaactt atagagtaac aggtggtgta ccacaaggat      2340
     ctgtcctcgg accaacgttg tggaatgcta tgtacgacgg ggtactgagg ctgaaactcc      2400
     cggacaaggc gaacatcgtg ggatatgcag acgacattgc gcttgtagta gtggacaaaa      2460
     ggctggacct gttagaggcg aaatgcacgg acgccgcatc acggatacaa agatggctca      2520
     ggaacgctgg gttagagcta gcagcacaga agacggaagc agtactgata agtgcacgca      2580
     gaaaaaagga gaaaatgata attgctattg atggtcatga aatagtttcc caagaagcca      2640
     ttaaatatct tggagttctg atcgacacga gattaagctt caagcagcac ctagtgggag      2700
     taagcggtaa ggcatcagcg gtcacgagag ccttgacaag aatacttccc aacgtaggag      2760
     gaccccaagg gcaacgaagg gcattattgt caacggttgc agactccatc actatgtacg      2820
     cagcaccgat ctgggcagga gccaaaaagt cccatctgcg agggataaca cagatataca      2880
     gacaaagtgc tctacgaata ggctgcgcat acagaacggt atcaaacgat gcaatctgtg      2940
     tcatcgcggg aaagccacca gtcgactgct ggcagaggag ctgtctcgtc tgtacagcaa      3000
     gcaaggagtg aggccaacac gcgaacaaaa agaggccgaa agagcgcggt ccatacgaaa      3060
     atggcagcaa cggtgggacc aatcggatga tggacgctgg acctataaac ttataccaca      3120
     aataagtgag tggataaaag gtggacacgg cgatgtcgac tactacacaa cgcagatcat      3180
     cagcggtcac ggctgtttcc gcggatacct tcatcgtttt cggctagcag acagtccatt      3240
     ttgtcccaac tgccccaacg aaatcgaaag cgcagaacat gttgctttcc actgcgatcg      3300
     cttcgaagaa gaacgacgaa cactggaggc agtacttggg cactctccat ctgctgaaat      3360
     tatcacgcac gatatgtgct cttccagaga taaatggaag gcaatgacag cgttcgcata      3420
     ctctgtgatg acaaggctcc aagaactgga gcgggaacaa aggaggacac cagaactgac      3480
     gacgttaaca gacgcctgag ttcatagctc ataacagaac cagacagaag acaaatcgat      3540
     tgcgcttgat cccaggcaaa atcgcttccg acgttccact catgtggaac tatcgatgcg      3600
     tatcgtctcc atacgccaag gacaggggac ccggacgcgg gtaccaggcg tgctaacagc      3660
     acaaaacggc tccaccccgt agtaatgttt actcggttcc ggggtggaat tcagccaggg      3720
     gaggaggatt gttataggtt agtgggtgca agccccacac accattagtg cgacggcact      3780
     tttgacggtg tcttcaggca ttggatttta acctcctmca waaaaaaaaa aaaaaaaaaa      3840
     aaaaa                                                                  3845
//
ID   R1-2_DGr    repbase;    DNA;    INV; 5678 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   grimshawi.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DGr.
XX
OS   Drosophila grimshawi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; grimshawi group; grimshawi subgroup.
XX
RN   [1]
RP   1-5678
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. grimshawi contains two subfamilies of R1.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..1761
FT                 /product="R1-2_DGr_1p"
FT                 /translation="RCFTVALIFAFALHLPSLCEKGTFFRVRVNLLSVLTS
FT                 VCVNKSIYRLSRVVMPPRKKRPAELVAEGALSVSSDDDTSLSSDASSDVVI
FT                 RRRGVLTKQRLRKATSETAVNSAGKNVDGRRSESNLMVTLKVPREKGEACN
FT                 SGTPGVSAGVPAVEEPIAARSASNALSLKRKGTPIEKMKAISKELVECALA
FT                 ECKTGTLVGSVLGYATQYEELLFTLIAENERLKGRLEAVRFNATNEHAGHV
FT                 TAGQTRVSPAAVSPRGPMSTMLSAPEMPRPVETWSLVVRSKTAGKTAKDVV
FT                 EKVVKEVGPTLGVRVHEVKPLRDGGAIIRTPSAAERKKIAGNAKFSEVGLE
FT                 VSVKERLGPKVVVQGVHAVISPDEFMAELYELNLKDKMSKEAFTKGVRIAS
FT                 KPWSQEGSAAVNVVLEGAGLAMQTLLDAGRCYVKWFSFRVRNFDPVVGCYR
FT                 CLGFDHKVAECRLKQDVCRRCGQMGHRVAQCSNALNCRNCAFKGRPSEHLM
FT                 MSPACPVYSAIVARASARH"
FT   CDS           1706..4831
FT                 /product="R1-2_DGr_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CLRLALCTVQLWRGRVLDINMSSRLLQLNCQKSYAVM
FT                 CDLGDMIVRRGSVVALLQEPYVANGCVRGLPAGMRVFPDSRANSAVVVNDV
FT                 SIECTVVNSTDWGVCVSLSGNFGRLYVASVYCKFGDPLEPYIAYMDEVLLL
FT                 AGSVPFILGIDANAPSPLWFSKISRSARYLNRSRGEVLAEWAVSQDVRVVN
FT                 EPSEWYTFAGPMGQSDIDVTLANVAATSVFGFQWSVLGGHGVSDHNPIEIV
FT                 ITHTSTTRESDGGNRWRTCGANWPLHGIFVSEAATQVPLSTFSAMNVDEQV
FT                 VCVNRWVTCANDRLFERHRKVNLKRVKWWSHELSVKRRSVRSLRKRFQRAR
FT                 SANAENAGQLRLAYSQCMNEYKQMLVRVKEDEWRSFLERNKDDPWGRAYKV
FT                 VRGRRREADVSGLRVGDVQLTAWSDCMNVLLNEFFPRADHQNLPPSVVGDV
FT                 DPLLDSELEVAFSMLKSRKSPGMDGFTGEMCKSVWKSIPDYMNVMYGKCMN
FT                 EGYFPNEWKCARVIVLLKSPDRVRSNPRSFRGISLLPVLGKVLERVMVERL
FT                 QERVSSQMSDRQFGFRKGRCVEDAWRFVSDSVESSNSRHILGIFVDFKGAF
FT                 DHLSWPSVLERLSECGCRELAIWESYFSGRRACAVGRHESVSLNVVRGCPQ
FT                 GSICGPFIWNLMMDTLLWQLERVCKCCAYADDLLILVEGQSRADVEASAAT
FT                 YLRVVYEWGLRVGVSLAMDKTVTMLLKGRLSRSRPPLVRLNGVSLRHVSEV
FT                 KYLGIVFGERMCFTPHIAYVKGRLLSLVGQVRRILRSDWGLSRSAARTVYD
FT                 GLFVACATYGSSVWCKAVLTVVGRKNVLACQRVMLLGCLPVCRTVSTEAMQ
FT                 VLLGVAPLDLEIRRRSLSYRIKRRLPLLQNEWLADRDVESLGLSECKKLLN
FT                 ECVLSDWQVRWDTSENGRVTHRFIREVTFAVDRPDFRLHLSFGFLLTGHGS
FT                 LNAFLHSRRLCDSPECPCGWVGETWEHVLCECPLYADLRDLSVLGITRGIS
FT                 GYDVSQVLSTCEGVRRMSEFARAAFARRRLIRGEVG"
XX
SQ   Sequence 5678 BP; 1246 A; 1129 C; 1803 G; 1500 T; 0 other;
     cagtacgagt tcagacttgg gaacgaacgg acgtgtcttt gctgtcgcgg ttaaacagag        60
     ataacggttc ttaaataacg ggatcttgtt tacatttcgc caatttactg ttgcgcttgt       120
     tttttgcatt tgctttcgca tttgccttcg ctgtgcggaa agtgtgaata acggtgcttt       180
     gagtagcggt actttgtgta gcggtgctct gagtaacggt gctttacagt tgcgcttatt       240
     tttgcatttg ctttgcatct gccttcgctg tgcgaaaagg gtacattttt tcgtgtgcgt       300
     gtgaatcttc tgtcagtgct tacgagtgtg tgtgtgaaca aatctattta tagattgtca       360
     cgtgttgtga tgccgccacg caagaagagg ccggcggagc ttgtagcgga gggggcgctg       420
     agtgtgtcgt cagatgacga cacatcgctg tcctctgatg catcaagcga tgtcgtgata       480
     agaaggaggg gggtgctgac taaacagcgg ttgaggaagg caacttccga gacggctgtg       540
     aattcagcag gtaagaatgt ggacgggcgg cgctcggaga gtaaccttat ggttaccctt       600
     aaagtgccta gagagaaagg tgaggcgtgc aattcgggca cgcctggtgt gagtgccggt       660
     gttcccgctg tggaggagcc cattgctgcg cgttcggcga gcaatgcgct atcattgaag       720
     cgaaagggaa cgccgataga aaaaatgaag gcgataagca aggagctggt agagtgtgca       780
     ctcgctgagt gtaagacggg gacactggtc ggtagcgtgt taggctacgc gacgcagtat       840
     gaggagctgc tgtttacgct gatagcggaa aatgagcgcc tcaaggggcg tttggaggct       900
     gttcgcttta atgcgaccaa tgaacatgct gggcatgtga cagctggcca aacgcgagtt       960
     tcgccggcag ccgtgagccc aaggggtccc atgtcgacaa tgttgtctgc cccggagatg      1020
     cctcggccag tcgagacctg gtccttggtc gtgcgcagca aaactgctgg taagaccgcc      1080
     aaggacgtgg tcgaaaaggt agtgaaggag gtagggccta ccttgggtgt gcgcgtgcat      1140
     gaggtgaaac ctctgcggga tggaggagcg attattcgca caccatctgc tgccgagcgg      1200
     aagaagattg cgggtaacgc aaaattcagc gaagttggtt tggaagtgag tgtgaaagag      1260
     agactggggc cgaaagtggt cgtgcagggc gttcacgctg taatctcgcc tgacgagttc      1320
     atggctgagc tatacgagct gaacctcaag gacaagatgt ccaaagaggc ctttactaaa      1380
     ggtgtccgca ttgcgagtaa gccttggtcg caagagggta gcgcagcagt gaatgttgtt      1440
     ctcgagggtg ctggcctggc catgcaaacc ctcttggatg ccggacgctg ctacgtgaaa      1500
     tggttctcat ttcgtgtgag gaactttgac ccggtagtgg gatgctatcg ttgccttggc      1560
     ttcgaccata aggtagcgga atgccggctt aagcaggacg tttgtcgtcg ctgcggccaa      1620
     atgggtcacc gcgtagctca gtgcagcaat gcattgaact gtcgcaattg cgcattcaag      1680
     ggtaggccat ccgagcatct tatgatgtct ccggcttgcc ctgtgtacag tgcaattgtg      1740
     gcgcgggcga gtgctagaca ttaatatgtc tagcagactt cttcagttga actgtcagaa      1800
     gtcatatgca gtcatgtgtg atttgggtga tatgattgtg agaagaggca gcgtagttgc      1860
     cctgttgcag gaaccctatg tggcaaatgg ttgcgtacgg ggactgcccg cgggtatgcg      1920
     agtatttcct gacagcaggg ccaactctgc tgtcgttgtg aatgatgtca gtatcgaatg      1980
     cactgttgtg aattcgactg actggggtgt gtgtgtgagc cttagtggca attttggtag      2040
     attgtacgta gcaagcgtat actgcaagtt cggggatccc ctcgaaccgt atatcgcgta      2100
     tatggatgag gtgctactac tggctggtag cgttccgttc atccttggta ttgacgcgaa      2160
     tgcaccgtcc cccttgtggt tcagtaagat atctagatct gctaggtatc tgaaccgctc      2220
     taggggtgag gtgctggccg agtgggctgt gtcccaggat gtccgggtcg ttaacgaacc      2280
     cagcgagtgg tacacgtttg cgggcccgat gggccagagt gacattgatg tcactcttgc      2340
     gaatgtggca gcaacgagtg tgtttggttt tcaatggagt gtactgggtg gacacggtgt      2400
     gagtgaccac aatccgattg agattgtcat cactcacact tccaccacgc gtgaaagtga      2460
     tgggggtaac cgctggcgca cttgtggtgc gaattggccc cttcatggga tttttgtgag      2520
     tgaagcggca acgcaagttc cgcttagcac ttttagtgca atgaatgttg acgagcaggt      2580
     cgtatgtgtg aataggtggg tgacttgtgc gaatgatcgc ttgtttgaga ggcaccgaaa      2640
     ggtcaacctc aaacgagtga agtggtggtc gcatgagttg agcgttaagc gtcggtcagt      2700
     gcggtcccta aggaagcgat tccaaagggc cagatctgcc aatgccgaga acgctggcca      2760
     acttaggtta gcttacagcc agtgtatgaa tgagtacaag caaatgcttg taagagtgaa      2820
     agaggatgaa tggcgttcct ttttggagcg caataaggac gacccctggg gtcgtgctta      2880
     taaagttgtg agaggtaggc gtagggaagc ggatgtaagt ggcctccgtg tcggtgacgt      2940
     tcagttaacg gcatggagtg actgcatgaa tgtcttattg aatgagttct tccctagagc      3000
     ggatcatcag aacttgccac cgagtgtggt tggtgatgtt gacccgctcc tggatagtga      3060
     attggaggtg gctttctcga tgttaaagtc gaggaaatca cctggtatgg atggttttac      3120
     tggggaaatg tgtaagagtg tctggaagtc aattccagac tatatgaatg taatgtatgg      3180
     aaagtgtatg aatgagggat atttccccaa tgagtggaag tgtgcaaggg tgattgtgct      3240
     tttgaagtcg cccgataggg tcaggagcaa tcctcgttcc tttcggggca tcagtctcct      3300
     accagtgctg ggtaaagtgc tggaaagagt catggtagaa aggctccaag agagagtgag      3360
     tagccaaatg tcagatcggc aatttggttt taggaagggc agatgtgtgg aagatgcgtg      3420
     gagatttgta agtgactccg ttgagtccag caactccagg catattctag gcatctttgt      3480
     tgattttaaa ggggcgtttg accacctgag ttggccgagt gtgttggaga ggttgagcga      3540
     atgtggctgc cgggaattgg ctatttggga gagctatttc tctggcagac gtgcgtgtgc      3600
     tgtaggtcgg catgaaagtg ttagcctgaa tgtggttcgt ggctgcccac agggatccat      3660
     ctgtggtcca tttatatgga acctcatgat ggataccttg ctatggcagc tcgagcgtgt      3720
     atgcaagtgc tgtgcgtatg cggacgacct gctcattctg gttgaggggc aatcgcgagc      3780
     ggatgtagag gcaagtgcgg caacgtactt gcgagttgtg tatgagtggg gtctcagagt      3840
     tggcgtcagt ctggcaatgg acaagaccgt gacaatgctg cttaagggca gattgtcgcg      3900
     tagtcgacct ccattggtta ggctaaatgg cgtcagcctg aggcatgtgt cggaggtgaa      3960
     atacctcggc attgtgtttg gcgagaggat gtgcttcact cctcatatcg catatgtgaa      4020
     agggcgattg cttagtttgg ttggacaagt gcgtcggatt ttgagaagtg actggggcct      4080
     cagcagatct gctgctcgca ccgtatatga tggtctattt gttgcctgtg caacttatgg      4140
     atcgtcggta tggtgtaagg cagtcttgac tgttgtaggc agaaagaatg tgctggcttg      4200
     ccagcgtgtg atgttgttag ggtgtctgcc tgtatgccgc actgtctcca cggaggcaat      4260
     gcaggtattg ttaggagtag cccctctgga cttggagatc aggcgtcgaa gcctgagcta      4320
     taggatcaag aggcggttgc cgttgctgca gaatgaatgg ttagcggata gggatgtgga      4380
     gagtttaggg cttagtgagt gcaagaaatt gctaaatgag tgtgttctgt ctgactggca      4440
     ggtcagatgg gatactagcg agaatgggag ggtcactcat aggtttattc gggaggtcac      4500
     atttgctgtt gaccgtccag acttcaggct tcacctgagt tttggatttt tgttgacggg      4560
     ccacgggtcg ctgaatgcat tcttgcattc aagacgactc tgtgatagcc cggaatgccc      4620
     ttgtggctgg gtgggagaga catgggaaca tgtcctctgt gagtgccctt tgtatgcaga      4680
     tctgcgagat ctaagtgtgc ttgggataac gcggggtatt agtgggtatg acgtaagtca      4740
     agtgctctcc acttgtgaag gggtaaggag aatgagtgag tttgcacggg ctgcatttgc      4800
     cagacgacgt ctcatacgtg gagaagttgg gtgaatgttg aatgtctgtt gggggtatga      4860
     atgtgggggt gtgtgaatgg attgctgagt tgcgttcggg ggtcaccagt cccggcttta      4920
     tggagcaaaa ctggaagtat ccttgtggta cgagttctga ccggaggact gatccggtac      4980
     cacgggcgtt ggggtgttca ggggcggtct cgaccctcgg ctctcagcgc ttttgttggg      5040
     gatatcagct ggccgcctag cggtctgaat tcgttcagtt atgaatgccg ctggttgcgg      5100
     aagaggaagg aataggcctc gctccccaca gtgagaaaac catgtccata aagcatggcg      5160
     tatactgttc catctgagat ttggtgttta catcaattcg cattctattc cgtacagtga      5220
     tatctttcct tctttttggg tcaccaaccc gtaactgttt tggagttaaa attgggagta      5280
     ccctacgggt acgaggcctg accggaggct tgctttccgg taccacgggt aatcaggagc      5340
     ccgcggaaca tagtttccgt cctggttttt ggttgcggcc cttcggggag tttcgtggtg      5400
     gctgtggttt gacacccaaa tgcgggtaga gctattgact cggcgtgttg ttgcgctata      5460
     caacagggtg ccgtgaccca tagagcggaa gtcgttttag ataggcggcc ctccaaacca      5520
     aggtggaagt tcacgaccaa acagtagtga cttcaaattg gtacctgcgg aatattaatt      5580
     ccaatggggc ggtaattgac gcttgaatta attccgtgct tggcaccgtg agattaagcc      5640
     atcccggcag gtgctcacgt taaaccaatt gactttaa                              5678
//
ID   R1-2_DK     repbase;    DNA;    INV; 3679 BP.
XX
AC   .
XX
DT   18-JUN-2012 (Rel. 17.07, Created)
DT   18-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3679
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1357-1357 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           547..3537
FT                 /product="R1-2_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQINLNHCRAAQDLLLQTVSEVAADVAILSEPYK
FT                 AREGGAWAKDRQGGPLAXWRRTAADVQHPFSRXMRAEVSGFCIYSCYLXPS
FT                 LPLDAFSRIXDNLCSDMRGRAKVVVGGDFNAWALEWGSVSTNARGXAVLEA
FT                 FASTDVVLLNDGMRHTFARAGAASIIDLTFVSSAISQDASWGVSDAYTGSD
FT                 HEAILCTVGAPEGTTRTLLRPRKAYRPDTLRTQAFANALDGMSAEALGEAN
FT                 EAANQIAAALEHACDQSMRLRGTCRRNQRPTFWWSDEIADLRSKCLHARRQ
FT                 MTRARGSSRLVECCEAYKSARRALKLAIREAKRECFLRLCDEAENDPWGGA
FT                 YRLVVKGLKAGSTAPSDPEALDSIVQALFPRGAPVVMTQPSAERHPNVDCE
FT                 VSEDEVIRTGRSVRTKKAPGPDAVPNRALKLAIALHPKEFATLYARCLQEG
FT                 TFPERWKRQKLLLLAKPGKPPGEPSSYRPICLTDTTGKVFEKVIAARLNAA
FT                 IERAGGLSPSQFGFRKGRSTLDAIEMVKXIAETAITGTRWKGGSKNYCLVV
FT                 TLDVRNAFNTADWNRTLESLAALNIPGYLLEIARSYFSQRVLIVDTDVGSR
FT                 VYEVSAGVPQGSVLGPLLWNTMYDGVLRLPMPSDTTIVGFADDVAVVVVAK
FT                 ERTAAEIKANAAIKAIESWLSSAGLELAAHKTEAVLISSRKKVETAEIQVG
FT                 GAVIESQRAVKYLGVLLDTRLCFKEHLQYAQKKASGTAGALARMLLNTRGP
FT                 KQNARRLLVSVVTSQLLYAAPVWAEAAKKKSFMRGVESTYRLCAIRVASAF
FT                 RTISDDAVLVLAGLVPLKELVREKSDIRAALHSQQGPERATTAELKSAARA
FT                 RSYGSWQARWDASPKGRWTHRLIPNIEAWMERKHGEVDFYLTQVLSGHGCF
FT                 RSYLKRFGHDTEDGCPECGSGIIEDAGHVFFECRRFDEERDELEAVAGSAI
FT                 RVDTLVPLMLSDQRTWDAVAEFSAKLMKSLRSLERVRNERTG"
XX
SQ   Sequence 3679 BP; 830 A; 976 C; 1224 G; 635 T; 14 other;
     tggsaaaagg sgstgctgwg cgccggggag atgaaggaga gcatcgagak ggtgctcggt        60
     gactccgcga ccgtgcgtgc gtcgacggag gacacgaaag tgctggttct ggaggtacgg       120
     aacgtcgact ctatcacctc gaagaaggag gtctgcgccg ctattgccgg ccagtttaac       180
     ttcgaggcgg aacgggtgag agtccggagc atgcgccgtg gccgctcaga gacgcagctg       240
     gcggtggtca gtctgcccgt cccactgkgc aaggcagtcc ttcagcgtgg agaggtgcga       300
     atcggatggt caacatgtag gatccgtgaa cggtccggcc caccgaggtg cttcaggtgc       360
     ctggaaaccg gtggatagga gtgcctgttg catcaaatgc ggagagtcgg gtcacaaggc       420
     agccgattgc tccaaggagc catcatgttt cctgtgcamg gcggctggta gcaaggagac       480
     gaggcaccag gcaggcggca tgggctgccc agcctcgaac agagggaaag ggaaccatat       540
     gcctgcatgc agttgatcca aattaatttg aatcactgca gagcggcgca ggatctgctt       600
     ctgcagacgg tgagcgaggt agcggcggac gtcgctatac ttagcgaacc atacaaggcg       660
     agggagggag gagcatgggc gaaggaccgg caaggcggcc ctttggctcw gtggcgacgg       720
     acagcggcgg atgtccaaca tcctttcagc cgacsgatgc gggcggaagt cagcggcttt       780
     tgcatttaca gctgctactt gkcccccagt ctcccgctgg atgcattcag caggatmmtg       840
     gacaacctat gcagcgacat gcgtggcagg gccaaggttg tagtcggagg cgatttcaac       900
     gcctgggccc tcgagtgggg atccgtctcc actaacgcca ggggacscgc ggtgctggag       960
     gcatttgcct cgacggacgt agtcctcctc aacgacggga tgaggcacac atttgccaga      1020
     gcaggagccg cctcaataat cgacctgacc tttgtgagca gcgcaatttc ccaggacgcc      1080
     agctgggggg tcagcgacgc ttacaccggg agcgaccacg aggcgatcct atgcaccgtg      1140
     ggtgcgccgg aggggaccac ccgcacactg ctgcggccca ggaaagccta ccggccggac      1200
     acgctgcgca cccaggcatt cgccaacgcg ctggacggca tgtcagccga ggcgctgggt      1260
     gaagccaacg aggctgcaaa ccagatcgca gcagccctgg agcacgcctg cgaccagagc      1320
     atgcggctga gagggacatg tcggaggaat caaaggccaa cattctggtg gagcgacgag      1380
     atagccgatc tccggtcaaa gtgcctccat gctcggaggc aaatgacccg ggcacgtggc      1440
     tcctctcgac tggtcgagtg ctgcgaagcc tacaagtcgg ccaggagggc cctaaaactg      1500
     gccataaggg aagcaaagag agagtgcttt ctgcggctct gcgacgaggc ggaaaacgac      1560
     ccctggggcg gtgcctacag attggtggtc aaagggctga aagcaggcag cacggctcct      1620
     tcggacccgg aagccctgga ctccatagtg caggcactgt tcccgagggg agccccggtg      1680
     gtgatgacgc agcccagtgc ggagcgccac cccaacgtcg actgtgaggt ctccgaggac      1740
     gaggtgatcc ggacgggaag gagcgttcgc accaaaaagg cgcctgggcc ggacgcagta      1800
     cccaacaggg ccctgaagct ggctatcgcg cttcacccaa aggagttcgc caccctatac      1860
     gccagatgcc tccaggaggg tacttttccg gagagatgga agaggcaaaa gctcctgctg      1920
     ctggctaagc caggcaaacc gcctggggag ccatcctcct acaggcctat ctgccttacc      1980
     gacaccactg gcaaggtgtt cgagaaggtg atagcagcaa ggctgaatgc cgccatcgag      2040
     agggcagggg gtctctctcc tagccagttt ggctttagaa aggggaggtc aacgctggac      2100
     gcgatcgaga tggtgaagsa gatagcggaa acggcgatca caggaacaag gtggaaaggc      2160
     ggctccaaaa attactgctt agtagtcacg ctggacgtaa ggaacgcctt caacactgcc      2220
     gactggaacc ggacgctgga gtccctcgct gcgctgaaca tcccagggta cctactggag      2280
     atagctagga gctatttcag ccagagggtg ctcattgtgg acacggatgt gggttccaga      2340
     gtatacgaag tctcagccgg agtccctcag ggctccgtgt tgggacccct gctctggaat      2400
     accatgtacg atggggttct acgactcccg atgcccagcg acaccactat cgtaggcttc      2460
     gccgacgacg tagcggtggt ggtagttgcg aaggagcgca cggctgcaga gattaaggcg      2520
     aatgctgcga tcaaggcgat cgaatcgtgg ctctcgagcg ctggtctgga gctagcggcg      2580
     cacaagacgg aggcggtcct catttcgagc cggaaaaagg tggaaacggc cgagatccag      2640
     gttggcggag ccgtgatcga gtcgcagagg gctgtgaagt accttggagt tctcctcgac      2700
     accaggcttt gcttcaagga gcatctccag tacgcccaga agaaggccag tgggacagca      2760
     ggagcactcg cgcggatgtt gctaaataca cgaggaccca agcagaatgc cagaaggctg      2820
     ctggtaagcg tcgtcacctc tcaactgctc tatgcggcgc cggtgtgggc cgaggcggcg      2880
     aagaagaagt ccttcatgcg gggagtcgag tcaacatata gactctgtgc catccgagtg      2940
     gcgagcgcct tccgtacgat ttcggacgac gcggtactgg tgctagccgg cctagtccca      3000
     ctgaaggagt tggtccgcga gaagtcggac attcgcgctg cgctgcacag ccaacaagga      3060
     cccgaaagag ccacgactgc cgagctgaaa agcgcggcca gggcaaggag ctatgggagc      3120
     tggcaggcca ggtgggatgc ctcgcccaag ggacgatgga cgcataggct catccccaac      3180
     atcgaggcct ggatggagcg gaagcacggg gaggtagact tttacctaac ccaggtgctg      3240
     agcgggcatg gctgcttccg cagctatttg aaaaggttcg gccacgacac ggaggatgga      3300
     tgcccggagt gcggatccgg gataatcgag gatgcgggac acgtcttctt cgaatgccgc      3360
     cgattcgacg aggagaggga cgagctggag gcggtagcgg ggtcagcgat cagggtagac      3420
     acgctggtgc cgttgatgct gtcggaccaa aggacgtggg atgcggtggc ggaattctca      3480
     gctaagctga tgaaatccct caggtcgctg gagagagtac gaaacgagcg gactggctga      3540
     gcggccttcc attgtgcgaa gcattgcttt gcggccgtac cgcacaatgc gggcccttgg      3600
     ccccgtcaat gcctagtttg tttgttgtat agtatttgtt aagtgtagtt aataaataat      3660
     aaacgtatat aaaaaaaaa                                                   3679
//
ID   R1-2_DM     repbase;    DNA;    INV; 3216 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   19-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   R1-2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2;
KW   R1 clade; R1-2_DM; endonuclease; reverse transcriptase.
XX
NM   R1-2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3216
RA   Kapitonov V.V. and Jurka J.;
RT   "R1-2_DM, a family of R1-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 27-27 (2002).
XX
DR   [1] (Consensus)
XX
CC   R1-2_DM belongs to the R1 clade of non-LTR retrotransposons.
CC   R1-2_DM is a separate family. Members of this family are ~92%
CC   identical to the R1-2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. R1-2_DM is only
CC   70%
CC   identical to R1_DM. The sequence is incomplete, its several
CC   hundred
CC   bp long termini are not reconstructed yet.
CC   There are ~15 copies of R1-2_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
CC   The R1-2_DM consensus sequence includes two open reading frames
CC   that
CC   encode a C-terminal portion of R1-2_DM-ORF1p (positions 1-716)
CC   and N-terminal portion of R1-2_DM-ORF2p (positions 719-3216)
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are most close
CC   to
CC   the R1-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase
CC   proteins, respectively.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..716
FT                 /product="R1-2_DM-ORF1p"
FT                 /translation="CSAVVMCDDPSIPGKQSAERVRKEVAPALGVRVHEVR
FT                 ELKCGGAVIRTPSVSEMKKVVANKKLAEVGLKVQPKKSQRPKVQVFDVDSG
FT                 IQPDGGIVRQQFKEEFSPAAFMKEMHLNTKPWSVTDGERANLTLEVDEKAL
FT                 NVLEQTGRVYIKWFSYRCRSLVHTYACHRCLGFDHKVSQCRVKETICPQCG
FT                 QAGHTAPRCTNPVDCRNCRFKGHPSRHSMLSFTCPIYGAVLARVNARH"
FT   CDS           719..3216
FT                 /product="R1-2_DM-ORF2p"
FT                 /translation="MFSFLQANCGRGRAPTIELXVRLRDSGHLFALVQEPY
FT                 VDLAGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVTEFGVCVSV
FT                 TGSFGSIFLCSVYCQFNTGLEQYLGYLDAVLLLASRTPVILGLDANAVSPM
FT                 WFSKLPERAQGSANYLRGELLSDWIQGCRAGVLNMPCDAFTFETPYARSDI
FT                 DVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPSW
FT                 NFSAARWRPFEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGR
FT                 RRPKTARKIVWWTAELSSKRQEVRRLRRRLQTARARASHDAEQLVSQLREI
FT                 SDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCLRXGG
FT                 RQYVTWHDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSR
FT                 RSPGMDGITAVIFKAVWRAIPEHITAFYSRCIRSGYLPSKWKRTIAVALLK
FT                 GSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRLKDVLPDGSRWQFGFREG
FT                 RCVEDAWRHVVSTVAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCR
FT                 EASLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIWNLMMDSLLQ
FT                 RLEPLRGFSALADDLLLFVEGTRIVLESKGEQLMSVVGAWEVGVAVLTSKT
FT                 ALLLGHFAQSRHTTVRFAGASLPYVDKYRYLGVTVVERLNVLPHIKSLRDR
FT                 LTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSAMR
FT                 HLVSCQRRILLGCLPVCRTVSTVAMQVLXGA"
XX
SQ   Sequence 3216 BP; 692 A; 827 C; 943 G; 751 T; 3 other;
     cttgctcggc ggtagtgatg tgcgacgacc cgagcatacc tgggaagcag agtgctgagc        60
     gggtccgcaa ggaggtcgcc cctgccctcg gtgtccgtgt acacgaggtg cgtgagttga       120
     agtgcggtgg agccgtcatc cgcacaccat cggtgagcga gatgaagaag gtcgtcgcga       180
     acaagaagct tgccgaggtt ggtctcaaag ttcagccgaa gaagagccaa cgacccaaag       240
     tccaggtgtt cgacgtcgac agtggaatac agcctgatgg aggaattgta cgtcaacaat       300
     tcaaggaaga gttctcccca gccgctttca tgaaagaaat gcacctcaac acgaaaccgt       360
     ggtcagtcac cgatggcgaa agagctaatc tgacgcttga ggttgacgaa aaggcgctga       420
     acgtccttga gcagaccgga cgggtctata tcaagtggtt cagttaccgt tgccggtcgc       480
     tcgtccacac ctatgcttgc cataggtgcc ttggatttga ccacaaagtt tcccagtgca       540
     gggtcaagga aaccatttgt ccacaatgtg gacaagctgg ccacacagca cccagatgca       600
     cgaatccggt ggactgccgg aattgtcgtt ttaagggcca cccttcgagg cattcaatgc       660
     tgtccttcac gtgccccatc tacggtgcgg tgcttgcgag ggtgaacgct agacattaat       720
     gtttagcttc cttcaggcaa attgtggccg tggccgagct cctaccatcg agctcgsagt       780
     ccgcttgcgc gactctggcc acttgttcgc attggtgcag gagccttatg tggacctcgc       840
     tggacgaatc acgggagtcc catccgggat gcgtgtgttt tcggacaggc gtggaaaggc       900
     tgccgtctac gtggacagca cggattccat ctgcatgccg atagagccgc ttgtcaccga       960
     gtttggagta tgcgtgagcg ttactggaag ttttggctca atcttcctat gctccgtgta      1020
     ctgccaattc aacaccggac tcgaacagta cctcgggtac ttggatgcgg tgctgctgct      1080
     agccagccgc acgcctgtca tccttggtct cgacgcgaac gcagtatccc ccatgtggtt      1140
     tagtaaactc cctgagcgtg ctcagggatc agctaactac ttacggggtg agctgctgtc      1200
     tgactggatt caaggatgtc gagccggagt gctgaatatg ccgtgtgacg cgttcacatt      1260
     cgagactccc tacgcacgta gtgatatcga tgtgacactc accaacgatg cagcgtctac      1320
     gtgcgctacg tacgactgga gagtggatga atgggatctt agtgatcaca acattatcaa      1380
     cgttgtggtt acgcgagacc caccaaacac agttgagagc tttgctcctg tgccatcctg      1440
     gaacttctcc gctgcacgct ggcgcccatt tgaggatgag gtgacaagac tggcttcgga      1500
     actcccggac gaattcgccg acacgccgtt ggatgaccag gtctctgcag tgcgctcgct      1560
     cgtgcactct gtgtgcgatc aagtgctggg acgcagacga cccaagaccg caaggaagat      1620
     agtttggtgg actgccgaac tttcttctaa acgccaagag gtcaggagac tgaggcggcg      1680
     gcttcagacc gctcgtgcgc gcgcaagcca cgatgccgag caacttgtct ctcagttgag      1740
     ggaaatctca gatcagtaca aggagctcat tctgaagtac aaagaggata actggaggcg      1800
     cttagtggga gagaacaagg acgatccatg ggggcaagtc tttaggattt gccgtggccg      1860
     caaaaggaca accgaactcg gttgtcttcg ctnaggtggc aggcagtacg taacctggca      1920
     cgactgcgcg ggtgttcttc tccggacctt ttttccattc tccagttttc ggcacccact      1980
     gtcattcctg aagagattcc accaccgctt gtcctctgag gtagacgctt gtgtcgcaag      2040
     gttgaagagc agacgctctc ccggcatgga cggcatcacc gcggtgatat tcaaggcggt      2100
     gtggcgtgcc attcccgagc acatcacagc gttttactcc cgctgtatca gaagtggata      2160
     ccttccctct aagtggaagc gcacaattgc agtggcacta ctcaaagggt cggataagga      2220
     caggagtgat cctgcttctt accgcggtat ctgtccgttg ttgtttgttt tcggcaaagt      2280
     gctagagggg atcatggtga accgattgaa ggacgttcta cccgatggaa gcagatggca      2340
     atttggattc cgagaaggac gctgcgttga ggatgcttgg agacacgtcg tgagcactgt      2400
     tgctgccaac caggcacaat atatgctcgg aatcttcgtg gacttcaaag gagccttcga      2460
     ccacgtggag tgggatgtcg tgatgagacg actcatcgac tccggctgcc gagaagccag      2520
     cttgtggaga agcttcttct ctggcaggag tgcaagttta gtcagcaggt atggtgaagt      2580
     gactgttccg gtaacacgag gttgccctca gggatccatc agcggtccat ttatttggaa      2640
     ccttatgatg gactcacttc tccagcgtct ggagccactg cgtggtttca gcgcgcttgc      2700
     agacgacttg ttgcttttcg ttgagggtac ccgaatcgta ctggagtcga aaggcgaaca      2760
     gctcatgtcc gttgttggag catgggaagt cggcgttgcc gtcctcacca gcaagacggc      2820
     gctgctgctg gggcattttg cccagagtag gcacactaca gtacggtttg caggagcaag      2880
     cctgccgtat gttgataaat accggtacct tggcgttaca gttgtcgagc ggttaaatgt      2940
     tcttccgcat atcaagtcgc tacgtgatcg gctgactgga gttgtgcagg cattggcacg      3000
     cgttctttgt gtggactggg gcctcagtcc acgcgccagg cggacaatat atgccggact      3060
     catggtgcca tgtgccttgt ttggtgcatc ggtctggtat gatggaccca gctctgccat      3120
     gaggcatctg gtctcctgcc agaggcgaat cctgcttgga tgcctaccgg tatgccgtac      3180
     agtgtccact gtggcaatgc aggtgctcgs tggcgc                                3216
//
ID   R1-2_DMo    repbase;    DNA;    INV; 1837 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1837
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1837 BP; 395 A; 334 C; 590 G; 518 T; 0 other;
     gcaataagga tgacccctgg ggtcgtgttt ataaaatagt tcgaggtaga ggcagggaaa        60
     cggatgtaag tagcctccgt gttggtaacg ttcagttaac ggcatggagg gattgcatga       120
     atgtcttgtt gaatgaattc ttccccagag cggatcatca ggactcacca cctagtgtgg       180
     ttaggcctgt tgatccgctt ctggatagtg agttggaggt ggctttctcg aggttaaagt       240
     cgaggaagtc acctggtatg gatggattca ctggagaaat gtgtaaaagt gtttggaagt       300
     caattccaga gtatatgaat gcgatgtatg cgaagtgtct gaatgagggt tatttcccca       360
     gtgaatggaa gtgtgcgaga gtgatagtgc tcctgaagtc gcctgacagg atcaggagca       420
     atcctagatc ttttcggggc atcagtcttc ttccggttct tggaaaagtt ctggaaagga       480
     ttatggtaga aaggcttcag gagagaatga gtgaccaaat gtctgacagg caatttggtt       540
     ttaggcaggg cagatgtgtt gaggatgctt ggaggtatgt tagtgactct gttgaggcta       600
     gcagctccac gtatgtcttg ggcatctttg ttgattttaa aggtgctttc gactacctga       660
     gttgggcgag tgttttgaga aggttggatg aatgcgggtg ccgagaatta gctctctgga       720
     agagctattt ctctggcaga cgtgcgtgtg ctgtagggcg gtgtgaatgt gtgagcgtaa       780
     atgttgttcg tggctgtccg cagggatcta tctgtggccc attcatttgg aacctcatga       840
     tggacccctt gctggtgcag cttgagcaga tgtgtaaatg ttgtgcgtat gcggacgatc       900
     tgctcatctt gattgagggt cggtcgcgtc ttgagatcga gacgaatgcg ggtatgtgct       960
     tgcgcactgt gtatgagtgg ggtgaaagtg ttggggtcag tcttgcaatg gacaagacag      1020
     tgtcaatgct gctcaagggc agattggcag ctagtcggcc acccattgtc agactgaatg      1080
     gagtgaatgt gaggtatgcg tctgaggtga aatacctcgg cataaccttc ggcgagagga      1140
     tgtgtttcac tcctcatatc gctggtctca aggcccggct acttggtttg gtggggcaag      1200
     tgcgtcgtat tttgaggtct gactggggcc taagcagacg tgctgtccgc accatctatg      1260
     agggtctgtt tgttgcatgt gcagcatatg gatcgtctgt atggtgcaag gcggtcacga      1320
     ctgtggtcgg cagaaagaaa gtgctggctt gccagagagt gcttctgtta ggttgtttgc      1380
     ctgtgtgccg cactgtctct acggaggcaa tgcaggtact gttaggagta gcccctcttg      1440
     acttggagat caggcgtcga gccttgatgt acaggatcaa gaggcggctg ccattgctgc      1500
     agaatgattg gctagcgggt agggatgtgg agagtttagg gcttagtgaa tgcaagagat      1560
     tggtgaaaga gtgtgttttg tctgactggc aagtcagatg ggacactagc gtgaatgggc      1620
     gtgtcactca tcggtttata cgggaggtta catttgccgg cagccgacca gactttgggt      1680
     tcggcctgag tcttggattc ctgttgactg gtcacggttc cctcaatgca ttcttgcatt      1740
     cgaggaacct ttatgacagt ccagaatgcc gttgtggctc ggctgctgag acatgggagc      1800
     atgttctctg tgagtgcaca aggtatgcag attttcg                               1837
//
ID   R1-2_DPer   repbase;    DNA;    INV; 4967 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4967
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1668-1668 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           397..1788
FT                 /product="R1-2_DPer_1p"
FT                 /translation="MEEEEKRVFERRTSLQRSPPQWQTPRGIWPREQAVEK
FT                 PAQLSLGTGTPLKAPLRVLPALTVSAPAEVPVNPFDFSSASTDKSGTGPKA
FT                 EGDLRAILASLVEKSTELSKMLRDARYLNKEMKELAQNVVRMQKSALHSFD
FT                 AKFQRKERVERRDQETQCSPQHDAPKRKLDKPTRSSPKRRNNMSGHPTLQS
FT                 HEQPARKTESAAPTEGEWEKVKSRAHARKPRPRPDVIIIEPKGEMTYAEIL
FT                 NLVTRNQSEKMKKVGESVSRVKRTAKGALLLELKDASKETAQLLREDIGTV
FT                 LGGKAEARALTQQTRLEMLDLDEMATSEDVRKAFSEQMGITLDVDAIKSLR
FT                 PGFGGTQRAIICLPATLATKALSVGKVKVAWSVCRIRERNLPLKCFRCLEI
FT                 GHVALNCKSSVDRSGWCFRCGSEEHKISDCHNEAKCFLCVGKGKPHSHVAG
FT                 SHRCPMAPKEKASQHAGHG"
FT   CDS           1784..4798
FT                 /product="R1-2_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVRFYQINLNHCEAATDLLSQSVREMRSDVAIISEPY
FT                 ISPEDGFWVQSSSGKAAIWACGKPPLRPSVCAEFRHFVRAKLGNLWIYSCY
FT                 LPPSLSRHSFAAAMDELADDARHHKPNVIAGDFNAWAQEWGSDISRSSSSD
FT                 AIYKGHALLEAFAALDVALLNQGTANTFNRGGSGSVIDLTFASSSLSPLST
FT                 WRLGNHYTASDHEAVVFSIGGEGGCRLTRATQTSRRAAYNPESMRIPRFLE
FT                 ALRNMEVGGSAQQMVNQLLESLLLACDASMSRKRPFKGKQSPTYWWNDEIQ
FT                 EARRTCLSARRRYQRARRRSGTSWPRLQAEYCGARKALKXAIKESKRECFL
FT                 QLCDSAEKDPWGRAYKTVMKRIHGSNAGSPSDPDQLRTIVEALFPSGAHGL
FT                 AISAVAHQPAYSVEPVTEDEIVALAQSLKAKKAPGPDGIPNRAVKLAMAHN
FT                 PHEFAKAFTQCLREGLFPPQWKLQHLVLLPKPGKPPDDPSSFRPICLIDSL
FT                 GKTLEQIIRRRLDNAVEDAGGLSPNQYGFRSGRSTVDAIGRVVDIASKAVE
FT                 GTRWKGGKKEYCLIVTLDIRNAFNTVKWECILDSLNRRGVPQYLQAIVRSY
FT                 FEGRLLEYNTEAGAQTHGITAGVPQGSVMGPLLWNIAYDGVMRLALPGGCQ
FT                 LTCYADDVALTVVAKHLDVVEANCDTAIQLIADWLRSAGLELAAHKTEAVL
FT                 VSTRSTVETAHIRVGDQRLSSKRAIRYLGVMIDTRLSFREHLXYVQEKAAN
FT                 TSRALFRILLNTRGPKQERRILLTSVVRSAMTYAADVWADGIKVASYARGV
FT                 KATHRLCALRICCGFRTISDDAALVLAGVLPIDLLVLEERAVAEAIRAGAA
FT                 RRDARKQAREGSLRAWQSRWDGSDKGRWTHRLIPDVRYWIGRRHGVVNFHS
FT                 TQLLSGHGCFSHYLWRFGHEDSPNCSWCGDATEDAEHIIFQCGRFSLIREE
FT                 LWRAAGGQLTPNNLIEAIVEDPMVWSAWSNFAAGAMKELRRCERRRNESG"
XX
SQ   Sequence 4967 BP; 1232 A; 1301 C; 1488 G; 939 T; 7 other;
     tttcagcgtc ccgtactcac tgcgcatggt ggctggcggc ggagacttcc cagttgcgtt        60
     gcaggggcaa acgcagacga gcagataggc ccgggggggg tgatcgttgg ttttggcgca       120
     tttctctatc catcgtgttg gtggtaggaa ataataaaaa caactttcac tcaaatcgct       180
     tcacttgcct cgatttatat tcacggatca gctgatcgag cagaggtgct tacagcamgg       240
     agttgccgga cagcgtagga cagtcatagg gttgccagat cggccaacca gtttgaaagt       300
     tgagcgccaa ccggaaaatc gcgcgggccc caaataaatt ttaaatttta aatttcaaat       360
     ttcaaatcga gtatttggca attacaaaca ggaagaatgg aggaggagga aaagcgggtc       420
     tttgagagga gaactagcct gcagcgttcc ccaccacagt ggcagacgcc ccgaggcatt       480
     tggcccaggg agcaggcagt tgagaagccg gcccagctaa gccttggtac cggaactcca       540
     cttaaggcgc cccttagagt gctgccagca ctgactgtgt ctgcaccagc agaagtccct       600
     gtcaatccct ttgacttcag cagtgcttcc acagacaaaa gcggcacagg accaaaggcc       660
     gaaggagatc tgcgggcgat cctggcttcg ctggtagaaa agtcgacgga attgtcgaag       720
     atgctgaggg acgcccgtta tctcaacaaa gagatgaaag agttggcgca gaacgtggtg       780
     aggatgcaga agtccgcgct tcacagcttc gacgcgaagt ttcagaggaa ggagagggtg       840
     gagcggcgtg atcaggagac gcagtgctcc cctcaacacg atgcgccgaa aaggaagctg       900
     gacaagccga cgaggagctc gccgaagcgg agaaacaata tgagtggcca tcccacgttg       960
     cagtcccacg agcaaccggc aaggaagacc gaatcagctg cacctaccga aggtgaatgg      1020
     gagaaggtga agagcagagc gcacgcccgg aagccaaggc cccgtccgga tgttattatc      1080
     atcgagccaa aaggggaaat gacttacgcg gagatcctta acctcgtcac ccgcaaccag      1140
     agcgagaaga tgaagaaggt aggcgagagt gtgagcagag tgaagcgaac agccaaaggt      1200
     gctcttctat tggagctcaa agacgcctcg aaggagaccg cgcagctgct tcgcgaggac      1260
     ataggcactg tcctaggagg caaggcggag gcgcgagcac tcacccagca gacgaggcta      1320
     gagatgctcg acttggatga gatggctacc tcggaggacg tgaggaaggc cttcagcgag      1380
     caaatgggga ttacactcga tgtggacgcc attaagagtt tgcgcccagg ctttggtggt      1440
     acccagcggg ctattatttg cctgccggcg acccttgcga cgaaggcgct atccgttggt      1500
     aaggtcaaag tggcatggtc cgtctgccgc atacgggagc gaaatctgcc gttaaagtgc      1560
     ttcaggtgcc ttgagatcgg ccacgttgca cttaattgca aaagctctgt agacagaagc      1620
     gggtggtgct tccgctgtgg gtctgaggag cacaagataa gcgactgcca caatgaggca      1680
     aaatgcttcc tttgtgtcgg aaagggcaag ccccactcac acgtagctgg tagccacagg      1740
     tgccccatgg cacccaaaga gaaggcaagt caacacgctg gacatggtta ggttttacca      1800
     aataaaccta aaccattgcg aggctgccac agatctgctc tctcagtcgg tgcgtgaaat      1860
     gagatcggac gttgcaataa ttagcgaacc atacatttcc cccgaggatg gattctgggt      1920
     ccaaagctcc tcaggaaaag cagcaatatg ggcttgcggt aagcctcctc tgcggccctc      1980
     agtgtgcgct gagttccgac atttcgtcag ggcaaaactg gggaacttat ggatttacag      2040
     ctgctatctc cccccaagct tgagccgtca tagcttcgct gcggcgatgg acgaattggc      2100
     cgacgacgcc aggcaccaca aaccaaatgt gattgctggc gacttcaatg cttgggccca      2160
     ggagtggggc agcgacatct ccagaagcag cagctcggac gccatataca agggacacgc      2220
     actgcttgag gccttcgctg cgttggacgt agcattgctg aatcagggga ccgcgaatac      2280
     cttcaacagg ggtggctctg ggtcagtcat cgaccttaca ttcgcctcta gtagcctttc      2340
     ccctctgtcc acctggcgcc tggggaacca ctatacggcc agcgaccacg aggcagtggt      2400
     gttctcgata ggcggagaag gtggttgcag actgaccagg gcaacgcaga caagccggag      2460
     agcagcctac aatcccgaat caatgcggat tccaaggttc ttggaggcgc tgaggaatat      2520
     ggaggtcgga ggctcagctc aacagatggt caaccagctw ctggagtccc tactgctcgc      2580
     atgcgatgcc agtatgagtc gcaagaggcc attcaagggt aagcaatcgc cgacctattg      2640
     gtggaatgac gagatccagg aggccagacg cacttgcctg tcagctagaa ggcgatatca      2700
     acgggctcgc agaaggagtg gcactagctg gccaaggcta caggcggagt actgcggagc      2760
     tagaaaagcc ctaaagamcg ccatcaagga gagcaagagg gagtgcttcc tgcagctttg      2820
     cgactcagcc gagaaggatc cgtggggacg tgcctacaag acggtaatga agcgaattca      2880
     tggcagcaac gcggggtcgc cgtctgaccc agaccagttg cggacgattg ttgaggcatt      2940
     gttcccatcc ggggctcacg gtcttgccat cagtgccgtc gcacaccagc ctgcatattc      3000
     ggtcgaaccg gtcacggagg acgaaatcgt cgccctggcc caaagcttaa aggccaagaa      3060
     ggctccaggc cctgatggaa tccccaaccg tgcggtaaaa ctggcgatgg cacacaaccc      3120
     gcacgagttt gctaaggcat tcacgcagtg cctgcgggaa ggactatttc cgccgcagtg      3180
     gaagttgcaa cacctggtgc tcttgccaaa gccaggaaag ccgccggacg atccctcctc      3240
     gtttcgaccg atttgcttaa tcgactcgct ggggaagact ctggaacaga taatccgtag      3300
     aagactggac aacgccgtcg aggatgctgg gggactttca ccaaaccaat acggcttcag      3360
     gagtgggagg tcaacggtgg acgccatagg cagggtagtt gacatagcct ccaaggcagt      3420
     ggagggaact cgatggaagg gcggcaagaa ggaatactgc ctgattgtca ccctagacat      3480
     caggaacgcc ttcaatacgg tgaagtggga gtgcatcctg gactcactta accggcgcgg      3540
     tgtaccccaa taccttcagg caatcgtaag gagctacttc gaggggagac tgctggagta      3600
     taatacggag gccggcgcgc agactcacgg cataacggca ggcgttcccc aaggatcagt      3660
     gatgggtccc ctattatgga acattgccta cgatggagtc atgagattag ctcttccagg      3720
     cggatgtcag ctaacctgct acgcagatga tgtcgccctg acggtggtgg ccaagcacct      3780
     ggacgtcgtc gaagcaaatt gcgacaccgc aatccagctg attgcagact ggctccgctc      3840
     tgcgggacta gagctagccg ctcataaaac cgaggcagta ttggtgagca cccgttcgac      3900
     tgtggagacc gctcacatca gggttggcga ccagagacta tcgtcgaaac gagccattcg      3960
     gtatctgggc gtgatgatcg acaccaggct cagtttccgt gaacacctaw gctacgtcca      4020
     ggagaaagcg gcaaacacga gtcgggcgct gttccgaata ctgctgaaca cccgtggccc      4080
     gaagcaggag aggaggattc tgctgaccag cgtagtccgc tcagccatga cctacgcagc      4140
     agacgtatgg gcggatggma ttaaagttgc cagctacgct aggggcgtaa aagccactca      4200
     tcgcctctgc gcgctccgga tctgctgcgg ctttcggacc atatccgacg acgctgccct      4260
     agtcctggcg ggtgtcctwc caatcgacct tctggttctt gaggagaggg ccgtggccga      4320
     agccatccgg gccggcgcgg caaggagaga cgcgcgcaag caggcccgtg aaggaagcct      4380
     cagagcatgg caaagccgct gggacggctc cgataaagga cggtggacac accgcctgat      4440
     tccggatgtc cgatattgga tcggcaggcg acacggtgtg gtcaatttcc attccacaca      4500
     gcttctgagc ggacacggct gcttcagcca ttacctttgg aggttcggcc acgaggactc      4560
     gccgaactgc tcgtggtgcg gcgacgccac tgaagacgct gagcacatma tttttcaatg      4620
     tgggcgcttc tcacttatta gggaggagtt gtggcgagcc gccggcgggc agctcacgcc      4680
     gaacaacctg atcgaggcga ttgtggaaga ccccatggta tggtcggcct ggagcaactt      4740
     tgcagccggc gccatgaagg agctgcgtag gtgcgagcgc cgaaggaacg agagtggcta      4800
     ggaggaacca tggtccctgc gaagcaatgc tttgcggccg tcccgcagag acccggaact      4860
     tcctgccggt ctttccaact caatacagct ccctgtctag ctttagttaa gtcccaggct      4920
     tataaaaatt taataaaatt aaggagttaa tacagaataa aaaaaaa                    4967
//
ID   R1-2_DSer   repbase;    DNA;    INV; 4994 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4994
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2049-2049 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It is found in tandem or inserted in
CC   (TTA)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           458..1831
FT                 /product="R1-2_DSer_1p"
FT                 /note="zinc finger."
FT                 /translation="MTSAQRKMDNEGDAFRRSSLMTRSPDNTVGMITHPNP
FT                 NLADKDNPENEYGSTPLPTQQTPLLTQTTKISSPRQELIYKMQALEEKALS
FT                 ECKAILKKMKIAMQKQRNISMDVKDGTSELSELFDVMENYRSSWKTAERER
FT                 SKEKRKTNEYALGNTVSETPTSTLQKRTATSPAAQERSKKVKNKQENDGFQ
FT                 TVTYKKGKKESKTKEGHVRQSEAEGTKGKTSTRMRTRPAAVLVRPAEGKSY
FT                 AEVLRNLRKNLKPEESDSNILSVRKTKAGDMLLELAKGSETVKLCENIKDT
FT                 LKECGTVKTMRQLVKLEIRDIDSITQEDEIISAIREGIGDTHQEIIIHLTG
FT                 VNSSEQRRAFVTLPTEDALKILTEKRIKIGWTRCRVKRCLDIKRCFKCFGV
FT                 GHLQKDCKGPDRRDLCIRCGESGHKMKTCTKAPRCCICTSENRSDVGHLPG
FT                 TAHCPSVARKGKP"
FT   CDS           1741..4788
FT                 /product="R1-2_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLYLYIREQERRRTPPWDGALPQCGQERKAMKVLQAN
FT                 MHRSRTANDLLHQIVLENKIDVVIISEQYKKRDEGVWLEDDTKTAAIWIPD
FT                 LTTLSHRGDKIGRCHVLTQIRNWTIFSCYLTPSDDIQTFQTKLECIEDNAR
FT                 RIGGNLIIAGDFNSRAQEWGMASTDSRGRRVLNMAASIGMLSANVGAIPTF
FT                 HRVGNEGTIPDITLVTENCAHKISDWKILDTYNGSDHNYITFNIAENEVTT
FT                 VRPTRKGWNVNRLDKARLIQEIDARQNRQSGGNAVSNNLAIIKQACNAAMP
FT                 KKGNPRRQGQEAYWWTEEIKALREACIKNRRRLTRARGRGILTELNDEFKK
FT                 SKKDLNAAIRKSKTEKWQRLCNDVNSDPWGLGYKIVMKKLRTRSTTPELEE
FT                 EQMDHIVKTLFPTHTNSKARTSPPIAEQIELFTVDELLKAAKTLKGKKAPG
FT                 PDNIPAEVLKVIAESRPQILLDMYNDCITSGKFPDIWKRQRLVLISKGKGD
FT                 PLTPSAYRPLCMLDTTGKLLEKMIKPRLSAAIERGGGLSPMQYGFRPGRST
FT                 IGAIQEVVNQALSSQQGNHFSRPVVLLATLDVKNAFNSVKWDNIIDALKRR
FT                 FQISGYLMRIIQSYLENRRLLYQTKAGEKCIEITSGAAQGSILGPELWNIS
FT                 YDEIFHLDIPEGTTIVGYADDIVAVITARNTEYAQRMLTQVMTRVKSWLNS
FT                 HDLKLADEKTELLLVSRKRIPLEIDMRVGETLIRTQKVIKYLGVRLDSKLT
FT                 FNAHIQETKKRATETTKALSRLMANVGGPLQSRRKLLMEINHAIMLYGCEV
FT                 WAGTLEATCRSKPLLEVQRTMALRIASAYRTVSGPAVLVIAGAIPIDLLAK
FT                 ARKQIYMRRQEGETTRGFIERTREVILQQWQERWAAEARGRWTARLLPNLV
FT                 AWYGRKHGDVDYYVTQMLTGHGYFAAFLHSIGKRTNARCVYGDAEMDSAEH
FT                 TIFHCKKFGPARNCLEQAVGAINPENIVTKMIGSEDTWKHIAGFVQNILRS
FT                 KKQDLDELTG"
XX
SQ   Sequence 4994 BP; 1707 A; 1117 C; 1261 G; 907 T; 2 other;
     ttcccgcaag ggcaccccaa ccggggtgac gggcctgaca cacccgcgat ccctagtcac        60
     ggcacgacca tggattcctc aaggaccaat gcttcgataa aactgtttga attcgacgat       120
     tgtgggctga cgaatgcggc attctgttac cttagtaagc aagagtgaca tctcgcagaa       180
     acggctttca ggaaaatgcc tccttcgcct ccgtccaatt aaaacttggc aagtctctta       240
     gtacgttcga accacacacc gatggctcgg tggtgcaggt gcagttgaat gcattcctgc       300
     ttagagtctg tcctggctct gaacacagat gcccatgaag ctctgtgtca accctcgcat       360
     gaacctcact gcttgcatag ggacccatgg ggacattttg gactactgca catatgcggg       420
     gagatagcgg cttagagttt ggacccactt aaacaagatg actagcgcac aacgaaaaat       480
     ggacaatgaa ggagacgcat tcaggaggag cagcttgatg acaagatcac cggacaacac       540
     cgtggggatg ataacccatc caaatccaaa tctcgctgac aaggacaacc cagagaatga       600
     atacggatca acccccctac caacgcaaca gaccccactg cttacacaga ctacaaagat       660
     aagctccccg cgacaggagc tgatatacaa gatgcaggca ctagaagaga aggccttatc       720
     agagtgcaag gcaattctca agaaaatgaa gatcgcaatg caaaagcaaa ggaatatcag       780
     catggacgta aaggatggca cctcagaact cagtgagctc tttgatgtca tggaaaacta       840
     ccgatctagc tggaaaaccg cagaaaggga gcggtcaaag gaaaagagaa aaaccaatga       900
     atacgcactt ggcaatacag tgagcgaaac ccccacttcg acacttcaga agaggacggc       960
     cactagcccg gcggcgcagg agaggagtaa gaaggtaaaa aataaacagg aaaacgatgg      1020
     ttttcagacg gtcacatata agaaggggaa aaaagaaagc aaaactaaag aaggacatgt      1080
     cagacaaagt gaagctgagg gaacaaaagg aaagactagc acaagaatgc gaactcgccc      1140
     agcagccgtc ttagtcagac cggcagaggg aaaaagctat gccgaggtgc tgcgcaacct      1200
     gcgaaaaaac cttaaaccag aggaatccga tagcaatata ctgtcggtca gaaaaacgaa      1260
     ggcaggtgat atgctcctgg aacttgcaaa aggaagtgaa acggtcaagt tatgtgaaaa      1320
     cattaaggat actcttaaag agtgcggaac agtgaagacc atgaggcaat tggtcaaact      1380
     ggaaatcaga gacatcgaca gcatcacaca agaagacgaa ataatttcag caatcagaga      1440
     aggtataggc gacacgcacc aggaaatcat aatccacttg acaggagtaa acagctcaga      1500
     acaaaggaga gcgtttgtta cgttaccaac ggaagacgct ctgaagatac tgacggaaaa      1560
     acgaataaaa ataggatgga cccgatgccg cgttaagcgt tgtctcgata taaagagatg      1620
     cttcaaatgt ttcggggtgg gacatttgca aaaggattgc aaaggaccgg ataggagaga      1680
     cctctgcatt agatgtggtg aaagtggtca taaaatgaag acctgcacta aagctccgag      1740
     atgctgtatc tgtacatcag agaacaggag cgacgtcgga cacctccctg ggacggcgca      1800
     ttgccccagt gtggccagga aaggaaagcc atgaaggttc tgcaagcaaa tatgcataga      1860
     agcagaacgg caaatgacct gctgcaccaa attgtgctgg aaaacaaaat tgacgttgtt      1920
     atcataagcg aacaatataa gaaacgggac gaaggcgtct ggctagaaga cgacacaaag      1980
     acggcggcga tctggatccc cgaccttacc actctttcac acaggggcga caaaatagga      2040
     agatgccatg tcctaacaca aataagaaac tggacaatat tcagctgcta tttgacccca      2100
     agtgacgaca ttcagacttt ccagacgaaa cttgaatgta ttgaagacaa cgccaggcga      2160
     ataggaggaa accttataat agcaggagac tttaactcaa gggctcaaga atggggcatg      2220
     gcatcaactg actctcgagg ccgtagagtc ctaaatatgg cagcaagtat cggaatgcta      2280
     tcagcaaatg taggagcaat accgacattc catcgagtgg ggaacgaggg cacaatcccc      2340
     gacataaccc tagtgacaga aaactgtgcg cacaagatct ccgattggaa aatcctcgac      2400
     acctacaacg gaagcgacca taactatata acgtttaaca tagcagaaaa cgaagtgact      2460
     acagtgagac caacgagaaa aggatggaac gttaaccgac tagacaaggc aaggctgata      2520
     caagaaattg acgcaaggca gaaccgacag agcggtggta acgcagttag caacaacctg      2580
     gcaatcataa aacaggcctg caacgctgcw atgccaaaaa agggcaatcc tcgaagacaa      2640
     ggacaagaag cgtattggtg gacagaagag ataaaagctc ttagagaagc gtgtattaaa      2700
     aacagacgcc gcctcacgag ggctagagga agggggattc ttacagaact taatgacgaa      2760
     tttaagaaat ccaagaagga cttaaatgct gccatccgga agagcaaaac ggaaaaatgg      2820
     caacgccttt gcaacgatgt caactctgac ccatgggggc tagggtataa aatcgtgatg      2880
     aagaagctga gaacaagaag cacaacacca gaactggagg aagaacaaat ggaccatata      2940
     gtcaaaacgt tattccccac tcatacaaac agtaaagcga gaacttctcc accaatagca      3000
     gaacagattg aactcttcac agtggacgag ctactgaaag cggcaaaaac cttaaaaggg      3060
     aagaaggctc cagggcccga caacatccca gcagaggtcc tcaaagtgat cgcggagagc      3120
     agaccccaaa tcctgctgga tatgtataac gattgcatta ccagcgggaa attccccgac      3180
     atctggaaga ggcaacgatt agttctcata agtaagggca aaggagatcc cctaacccca      3240
     tcagcttatc gaccactatg tatgcttgac actaccggga agctactaga gaaaatgatt      3300
     aagccacgcc tatcagcagc gatcgaaaga ggtgggggtc tttcaccgat gcagtatggc      3360
     tttaggccag gcaggtcgac cattggagca atccaagaag tcgtcaacca agcgctcagc      3420
     agccaacaag gcaaccattt ctcgaggccg gtagttctcc tagcaacact ggatgttaaa      3480
     aacgcattca acagcgttaa atgggacaac ataattgatg ccttgaaaag acgattccaa      3540
     atctcaggat acctgatgcg gataatacag agctatcttg agaaccgacg actactgtac      3600
     caaacaaaag caggagagaa atgtatagag ataacttcag gagcggcaca aggatcaata      3660
     cttggaccgg agctttggaa catcagctac gatgaaattt ttcacctaga catccctgag      3720
     ggcacgacta ttgtggggta cgcggacgac atagtcgcag tcattacagc tcgaaatacc      3780
     gagtacgcac aacgtatgtt gacgcaagta atgacacgcg taaaaagctg gctgaactca      3840
     cacgacctga aactggcgga cgaaaaaaca gagctacttt tagtcagcag aaaaaggatc      3900
     cctctagaaa tagacatgag agttggagag actttaataa ggacgcagaa ggttataaag      3960
     tacctaggag ttagactgga ctcaaaattg acattcaatg cacacataca agagacgaag      4020
     aagcgggcga ccgagactac aaaggcgctt agcagactca tggcaaacgt gggcggcccc      4080
     ttacaatcaa ggcggaaact cttaatggag ataaatcacg caatcatgct gtacgggtgt      4140
     gaggtctggg caggcaccct tgaggcaacc tgcaggtcaa aacctctact tgaggtacaa      4200
     agaaccatgg ctctacgaat mgcgagtgca tatcgaacgg tatccggccc tgctgtacta      4260
     gtaattgcag gcgccatacc aatcgaccta ttggccaaag cgcgaaaaca aatatatatg      4320
     aggagacagg aaggagagac gacaagaggc tttattgagc ggaccagaga agtaattctc      4380
     caacaatggc aggaaagatg ggcagccgaa gcaaggggaa gatggacagc tagactgtta      4440
     ccaaacctgg tagcttggta cggaaggaaa cacggagatg tggattacta cgtcacgcag      4500
     atgctgacag gccatggcta ctttgccgcc tttctgcact ctatagggaa aagaaccaac      4560
     gccagatgcg tatatggaga tgcggagatg gacagtgctg aacacaccat tttccactgt      4620
     aagaaattcg gacctgcgcg gaactgcctg gaacaagctg ttggggcaat aaacccagaa      4680
     aatattgtca cgaagatgat aggcagcgaa gacacgtgga aacacatcgc aggattcgtg      4740
     cagaacattc tcagatctaa gaagcaagat ctggatgaat taactgggta atctggacgc      4800
     agaaagaaga tgagagcgca ttgcgctgaa ttggcgccac cttgaagtaa tgcgaaagct      4860
     gttccgaggt gggaacacgg ccaaatgcga ggggggggtt tagtgggtgc gagccccaca      4920
     tacctttttt tgcgacggca atagggaaga tgcgttaggc attccccctc ctcaacccaa      4980
     aaaaaaaaaa aaaa                                                        4994
//
ID   R1-2_DSuz   repbase;    DNA;    INV; 5198 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5198
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 605-605 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           691..2130
FT                 /product="R1-2_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MDREKSSGHDETQALAVARAEEELLKKFQMMKQKVQR
FT                 SPTGMEQAPDAHPVSAPPKVTGPVFNFGSNEDEQTTPKRSREPTSPEEAXD
FT                 GAHKRQRVQKSAAALTDELGKMLDEMIAKFTDTKSNNKKVVRHVTQATIDS
FT                 LHAMKKLQSEISATLDEPRARGQTASATQQTTPSLVAPRQEGIERTHTGAG
FT                 NPGRDPPRNPPWQQVIRKTKKPHETAASIGEGKDHVSRTEKRRNQRSDAIL
FT                 IKCSEGTYADMLKLVKTEPTLQGLKDGVQGIRRTANGSLLLKMQKPSDPAT
FT                 QKLHTAIKSAFSGKAEVAMLEDTVQVEIRDLDLMTTCEEVLQAVYAEEECD
FT                 IPAGAAPRMRKAYGGTQTATVHLRPEHAQRILDKGKIRVGWVVCRIRQKVE
FT                 PRRCYKCMGLGHMSARCPASEATAKNTQQSCFRCGKDGHKYKTCTQGKPKC
FT                 IICTRSGKSGGEAEHSTLSSACPEYRRAMHDKLNG"
FT   CDS           2126..5050
FT                 /product="R1-2_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVKVLQLNLNHCRAAQDLLAQTVIEQQAEVAILSEPY
FT                 KDKHEGVWQRSSDGRAAIWSCGQPPGHLSQRASRTGYTRAKIKGITFYSCY
FT                 IAPSAHISEFRTIMQEIADDARGRSPILIAGDFNAWSTTWGSASTTQRGTI
FT                 LLEAVASLNVCLLNEGNRPTFSKSGRESIIDLTFASPELARNCVWRVSDIY
FT                 THSDHALIITQTSPRLTAPSSRQTTYKAHTLNTVSLLAHMEGVCVTGDANT
FT                 CARNIAERVKEACDASMEKATKGGNGRRPVPWWNDEIGSARRDCLAARRRC
FT                 QRSRGRGSQELREXTYRAKRKVLKNAIKASKARCFQELCEAADAEPFGSAY
FT                 RMVMGKLNRQPTPTGHVQLGQIVSTLFPTQPPLTWQATGEGDTVLTSEAEV
FT                 LAALTKTKVEKAPGPDGIPNAALHTLVANFPGIFTEMYNMCLTQRTFPIGW
FT                 KRQRLVLIPKPGKLNDDASSYRPLCMLNTTGKIFERIICTHLEKELDQLRA
FT                 LSDHQFGFRRKRSTIDAIQTVTQLAANAIEGERWLGGSKEYCLVCTLDVKN
FT                 AFNSANWNLVLQALQRMGISNYLIELVADYFKDRVLTYSSDAGEHEYLVTG
FT                 GVPQGSVLGPILWNVMYDGILRQVLPEGCTVVGFADDIALVTVAKTLDEIT
FT                 DRCSLSIDTLMCWLTDNGLAVAEHKTEAVLISSRKTVEKATIRVGSTLIET
FT                 SASIKYLGVLIDHRLSFKTHLSYAAAKASRSTAAISRMMANTRGPKQHSRR
FT                 IIATVVTSIIMYAAPIWAEAMKTASYSRQCKAVYRRCALRITSSFCTVSEE
FT                 AALVVAGTIPIDLLAAERRTGSXGSRTQRGNTIEAWQMRWNNATTGRWTHR
FT                 LIPSLTPWLQRRHGQVDFYLTQMISGHGCFKEYLHRFKHEPNPYCDHCGTG
FT                 SIEDAEHALFICPLYDRNRAEAETTTVCNLTADNVISCMLEDQSKWDAIAN
FT                 MAAGILKDLRRRERSRRMES"
XX
SQ   Sequence 5198 BP; 1479 A; 1439 C; 1424 G; 853 T; 3 other;
     agttgacctg aacatcggtc gccaatatat cgagtttttg gtcgttgcaa atcgggttta        60
     atacctaaaa gtgcgtttga ttagtgcggg acacctcagg ttgcaggtac gtaccacaga       120
     agcgacagga aggttctacc cagccaacaa accacactgc tacggttgca aagggtggcc       180
     aatcttggtg gacagaaggg ggggatcctc actctcccgc acccacacag caacactcca       240
     ctccagagcg ccacatatac ttggttctgc tcacagcttc cacaagccgc acacgcgcgg       300
     tttttccggc acaaacaaac aacatcgatc agctgatcgc agtgctggac agcgccgtct       360
     ctaacagcga gcttaacagc gagcttaaca gcgggcttaa cagcgcgagc ttaacagcga       420
     gctttccccg ctgagctata cagctgctaa gcggcgagct cctacgaagt cggttgcccg       480
     ggaatttcaa ataaaataaa accaccttcg ccactgccta taggggtgga tgcgcaaaaa       540
     gccaagttac cggccaactt ccaaccccac cgcgatagcg gcgccagcgc aaacggggct       600
     ctggggaccg agtcggagcg gtatagctcc catcaggcag taaccggggg aaatcccggc       660
     tcaccgaggg acctccggct agtgcaggcg atggataggg agaaatcgtc cggacatgac       720
     gagacccagg ctcttgcagt tgccagggca gaagaagagc tgctaaagaa gtttcagatg       780
     atgaaacaga aggtgcagcg gtcgccaacg gggatggagc aggctcccga tgcccaccca       840
     gtgtcagcgc ctcccaaagt gaccgggcct gtgttcaact tcggcagtaa cgaggatgaa       900
     caaaccaccc cgaagagaag tcgggaacca accagccctg aagaggcgak cgatggagcc       960
     cacaagaggc agcgggtgca gaaaagcgcc gcagctctca ccgatgagct gggcaagatg      1020
     ctcgatgaga tgatcgcgaa gttcacggac acaaaaagca acaacaagaa ggtagtccgc      1080
     catgtcacac aggccacgat cgactcattg catgcaatga agaagctgca aagcgagatc      1140
     agtgcgacgc tggatgaacc ccgagccagg ggtcagaccg ccagcgcaac ccagcagaca      1200
     acaccatcgc tcgttgcccc acgacaagaa ggcatagagc gaacgcatac tggcgcgggg      1260
     aacccaggca gggacccgcc aagaaacccg ccctggcagc aggtgatacg taaaaccaaa      1320
     aagccccacg agactgcagc gagtattggg gaaggcaaag accacgtgag ccgcaccgag      1380
     aagcgcagga atcagcgctc tgacgctatc ctaatcaaat gcagcgaagg aacgtacgca      1440
     gacatgctca agctggtcaa aaccgagcct acccttcagg ggctcaagga tggggtgcaa      1500
     ggcatacgca ggacagccaa tgggagtctg ctactcaaga tgcagaaacc ctcagaccca      1560
     gccacgcaga aactgcatac tgccatcaag tcggccttca gcggcaaagc cgaagtggct      1620
     atgctggaag acacggtgca agtggaaatc cgcgacctag acctaatgac cacctgcgag      1680
     gaggttctac aggcagtcta cgctgaggag gagtgcgaca tcccggcggg cgctgcacct      1740
     aggatgcgga aggcgtatgg cggaacccaa acggcgacgg tccacctcag acctgagcat      1800
     gcgcagcgga tcctcgacaa ggggaaaatc agggttggat gggtagtctg ccgcataaga      1860
     cagaaagtgg agcctaggcg atgctacaaa tgcatgggat taggccacat gtcagccaga      1920
     tgtccagcgt cagaggcaac agccaaaaac acgcagcaat cctgcttcag atgtggcaag      1980
     gatggccaca agtataaaac ttgtacccag ggcaaaccaa aatgcatcat ctgcacaaga      2040
     agcggaaaat ctggaggaga ggccgaacac tcgaccctca gcagtgcgtg ccctgaatac      2100
     cggagagcca tgcacgataa attgaatggt taaggtccta cagctgaacc ttaaccactg      2160
     cagagcggcg caggacctgc tagcacagac ggtcatcgag cagcaggctg aggtggcaat      2220
     actcagcgag ccctacaagg acaagcacga aggcgtatgg caacgcagtt cggacggcag      2280
     agcagcaata tggagctgcg ggcagccccc tggacaccta tcgcaaaggg cttccaggac      2340
     gggatacacc agagcgaaga tcaaaggcat cacattctac agctgctaca tagccccgag      2400
     cgcacacatt agcgaattca gaacaataat gcaggagatc gctgatgacg cacgcggtag      2460
     gtcccctatc ctcatcgcag gtgatttcaa cgcatggtcc acaacatggg gcagcgctag      2520
     tacgacgcag cggggaacca tcctccttga ggcagtggct tcgttaaacg tatgcctact      2580
     caatgaaggt aatagaccaa ccttcagcaa gtcaggtcgg gagtcaatca tcgacctgac      2640
     cttcgctagc cctgaactgg cacgcaactg tgtatggagg gtgtcagaca tatacaccca      2700
     cagcgaccac gccctgatca tcacccagac aagccccaga ctgaccgccc caagcagccg      2760
     ccaaacgaca tacaaagcgc ataccctgaa cacagtgtcc ctcctagcac acatggaagg      2820
     cgtctgcgtt acaggagacg ctaacacatg cgcgaggaac atagccgaga gagtgaagga      2880
     ggcgtgcgac gcatctatgg agaaggccac gaaaggtggt aacgggcgaa gaccagtacc      2940
     atggtggaat gacgaaatag ggagcgcgag gagagactgc ctagcggccc ggcgcaggtg      3000
     tcagagaagc agaggacgcg gaagccagga gctaagggaa wcaacctaca gagctaagag      3060
     aaaggtgctg aagaacgcga ttaaagctag caaggccaga tgcttccagg agctgtgcga      3120
     agcggcggat gcagagccat tcgggtcagc atacaggatg gtcatgggta agctcaacag      3180
     acagccgacc cctaccggcc acgtacagct tggccaaata gtgtccaccc tgttccccac      3240
     ccagccgccc cttacctggc aagctaccgg ggaaggcgat actgttctca ccagcgaagc      3300
     cgaagtcctg gctgcgctaa cgaaaaccaa agtcgaaaaa gcccctggcc ccgacggcat      3360
     tcccaatgct gcactgcaca cattggtggc aaacttccct ggtatattca cggagatgta      3420
     caacatgtgt ctcacccaac gaaccttccc cataggttgg aagcgacaaa ggttggtgct      3480
     tatcccaaaa ccgggcaagt tgaacgacga cgcatcctcg tacagacccc tatgtatgct      3540
     gaatacaacg gggaaaatat tcgagcgcat aatctgcacc cacctcgaaa aagaactcga      3600
     ccaactcaga gcgttatcgg accaccagtt tggcttccgg agaaaaagaa gcactattga      3660
     cgcgatccaa acggtcaccc aactggctgc taacgcaatc gaaggagaaa ggtggctagg      3720
     tggctcaaaa gagtactgcc tcgtctgcac cctggacgtc aagaatgcct tcaactctgc      3780
     caactggaac cttgtcctgc aggcacttca gcgcatggga atctcgaact acctgatcga      3840
     gctcgtagcg gactacttca aggacagagt gctcacatat tcctctgatg ccggagagca      3900
     cgagtacctg gtgacaggag gagtacctca aggctcagtc ctgggcccga tactgtggaa      3960
     cgtcatgtac gacgggatcc taaggcaggt actacccgaa ggatgcacag ttgtgggatt      4020
     tgcggacgac atagcgctgg taacggtagc gaaaaccctc gatgagatca cggatagatg      4080
     cagcctctcg atagacaccc ttatgtgctg gctcacagac aacgggttag cagtcgccga      4140
     gcacaaaacg gaggcagtgc tcataagcag caggaagact gtggagaagg ccacaatacg      4200
     agtcggatca actctaatag aaacaagcgc ctcaatcaag tatcttggag tactgatcga      4260
     ccacaggtta tcgtttaaga cgcacctatc gtatgccgca gccaaagcat ccagatcgac      4320
     tgcagccatc tcaaggatga tggccaatac tcgaggacca aagcagcaca gcagaaggat      4380
     tatagcgaca gtggtgacat ctatcataat gtacgccgcg cccatatggg ccgaggctat      4440
     gaagaccgca tcatacagcc gccagtgcaa agctgtctac agacgctgcg cactgcgcat      4500
     cacaagcagc ttctgcacgg tatctgagga agccgcgcta gtggtagccg gtactatacc      4560
     gatagacctg ctggcggcag aacgaagaac tgggagcasa ggaagcagga cccaacgcgg      4620
     taacacgatc gaggcatggc aaatgaggtg gaacaatgcg accacagggc ggtggacgca      4680
     caggctaatt cccagtctaa ccccctggct gcagagacga cacggacagg tagacttcta      4740
     cctcacgcag atgatctccg ggcacggatg ctttaaggaa tacctgcata ggtttaagca      4800
     cgagccaaac ccctactgcg accactgcgg cacaggaagc atcgaagacg cggagcacgc      4860
     gctattcatc tgccccctat acgataggaa ccgagccgaa gctgaaacga caaccgtatg      4920
     taacctgaca gcggacaacg tgatcagctg catgctggaa gatcaaagca agtgggacgc      4980
     gatagccaac atggccgctg gcatcctgaa ggatcttagg cgtcgagaac ggagtcgacg      5040
     catggagtca taaggacgag cggcaacctg accgccatcc gtcccgcgaa gtatagcttt      5100
     gcggcagtcc cgcgggatcg gaactttttc tacctcttct cttcttctac cacttatatt      5160
     cttgtatata tttaagctta tttaataaaa aaaaaaaa                              5198
//
ID   R1-2_DTa    repbase;    DNA;    INV; 5304 BP.
XX
AC   .
XX
DT   06-JUL-2012 (Rel. 17.08, Created)
DT   28-JUL-2021 (Rel. 26.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DTa.
XX
NM   R1-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5304
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1718-1718 (2012).
XX
RN   [2]
RP   1-5304
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (28-JUL-2021).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1009..2184
FT                 /product="R1-2_DTa_1p"
FT                 /note="zinc finger motifs."
FT                 /translation="MATKAKLARMKQLQSSIGAWLNAPNVAEKEPTEAEMV
FT                 CXNCSHRKXDTAEKAQQTMKVWTRARTVQTEQSLPEEVAQPIEGSRPQQRD
FT                 RTKSAPVATKAPASRVPQVQQTVSAQXRRPASSVGMGPGNGWSTVTRRAGG
FT                 KTXKGKRERPEAVIVQAEGKTYSEILAMVTRRDDNQLSDLGSCVNKVRRTA
FT                 NGNLLLEVAKASEKSADKMRENIAQVLGSNAEVRAITEDSKVTVFEVRGLD
FT                 ALVRETELPAAIAKQYGIDARKVKIRSIRPSFSGTQTAVFSLPVPQGKMVT
FT                 SHRQIRIGWSLCRIRELGGPPRCFKCLELGHIAIRCKSPIDRSGNCFKCGE
FT                 PGHMAAGCSKEPRCLTCATAGIKDTTHQTGSKKCPSGCSGASTTSTSCN"
FT   CDS           2178..5171
FT                 /product="R1-2_DTa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNMNHCRAAQDLLMQTVRELGLEVAILSEPYK
FT                 VGNDRRWAADINGTAALWLCGGDGLEMTNIRAGDGFVRAKIGDFWVYSCYL
FT                 APSVSVKDFERIMDDLCSDLRGKTKVVVGGDFNAWAEEWGCPSTNARGRAV
FT                 TDTVASLDVVLLNEGSQQTFSRASGGSIIDLTFVSSSLASRTSWRIGDVYS
FT                 ASDHEAILLTIGVTASNRLPPAVHRKAYRQDTFRTQAFARALEGLSVSDGD
FT                 TADDAANKLAARLEEACDQSMDQRRTFRKDHSPVYWWTEEIASLRRTCHRA
FT                 RRLVQRARGTPNLESLNETYKAAKKALKLSIRDSKRECYWKLCDELENDPW
FT                 GRAYKMVVKRMSAGNRSPSDPSALEAIVQALFPAGRRHSIPRCTSGISDSI
FT                 CPVTEAELLATARVLPNKKAPGPDSVPNGAVKALLSLQTKAVADLFNKCLV
FT                 EGTFPDRWKRQKLLLLSKPGKPAGEPSSYRPICLLDTIGKVFERVIAARLN
FT                 AALESAGGLSPNQYGFRKGKSTLDAIGKVTRIAAEAIAGARWKGGTKEYCL
FT                 LVTLDIRNAFNTADWGRTLESLRSFNIPGYLLNVVHSYLSKRQLSVDTSSG
FT                 PRIYEVTAGVPQGSVLGPLLWNTMYDGVLKLPMPSNTSIVGFADDVALVVV
FT                 SKHVPTIVATANRAIKAVEAWLSVAGLELAAQKTEAVLITSRRVVETAEIL
FT                 VGGTTVQSQRALKYLGVMLDTRLSFREHLEYANKKARETTRSLCRILLNTR
FT                 GPKQDKRILLASVVRSQLLYAAPVWAEATAKDSYMREVNSTYRLCAIRISC
FT                 AFRTISDDAVLVIAGQVPLGELVRESKDIRTTLSLIQDDPRAKAEARARSR
FT                 MQSVSNWQKAWDISSKGRWTHKLIPCIEAWVNRKHGQVDYYLTQALSGHGC
FT                 FRSYLKQYGHETEDGCPECGSGIAEDAQHVLFECHRFNHERQVLEEIAGAR
FT                 VQPETLVPLMIGNQRTWEAAAAFAASVLRTLRSLERERRGAAV"
XX
SQ   Sequence 5304 BP; 1334 A; 1425 C; 1608 G; 917 T; 20 other;
     ggagcgaggt tgttggtcgg gggggagagg ggatcgttct ctgcatcgaa ctttctcttc        60
     cactktctct ttgtgtccca actctctttg tgcagcaaat gtggatgccc ccacaaaatt       120
     ccgccggtca cgtcagctga tcgtgaaaat cagctgcgac cagtgttggt caacgggcga       180
     ctcgcagaag kctggcagcg ctgcagctct gcacwcacgg agctttgcac cacagcgccc       240
     cctatggcgg ckactatcgc tgcctgccgg aagctgattg ctacgagctt cacttgtgga       300
     tcgcgccaaa aaccgcagca cacttttccg ggctgctgct cgcgatcctt ggcaaagagg       360
     acgaattttg gcgtttttca ccgccgaggt acgcacgggt gkwaamggtc atggaactga       420
     ctgactgcca tcctcaccgc ccaggcggta cacccaaaac ggggctctgg cgaccgagac       480
     ggggcggtat atcctccatc ascaatacgt cggagggaaa tcttcggccg gcgatggaaa       540
     cgtacccggt ctggaaaaac ccacgtagcg tctgtcccat actgggcggc tgcgtggctg       600
     cgtctgagcc acagtggccg gcagctaaca cacctggcag caggtataaa atgcagcctc       660
     gcattgggcc aaaatgcaca tgttcaaagg aatgtcttcg caaaacgaaa atactccagg       720
     tggcagccac aaatgtggaa atccacccgc gggggaaccc gcggccaggg caaggattct       780
     ggaggcccta aaaaacattc caaagaaaac cgatgtggcg gtggctgact cggccgccac       840
     tgaggataaa gcaccaagcc aagaaaawaa taacgwagaa gggcccttgg ccctcaggaa       900
     aagcagccgg ctcakgcgaw ccccggttcg tacaacccgt cggagctagg gaggatcctg       960
     gacgaagtcc tgatcagcgt gaacgatggc aaggtgcgcc acatcacgat ggctacaaag      1020
     gccaagctag cgcgcatgaa gcagctgcag tccagcatcg gagcgtggct gaacgcaccg      1080
     aacgtagccg agaaggagcc cactgaggct gaaatggtat gccsaaactg ctcgcaccgc      1140
     aagkwggata ccgcggaaaa ggcccagcaa accatgaagg tctggactag ggcgagaaca      1200
     gttcaaaccg aacagagtct ccccgaggag gtagcccaac ccatagaggg cagcaggccg      1260
     cagcagcgcg atcgcacaaa gtcggckccc gtggcgacca aggcaccggc ctcgagagtg      1320
     ccacaggtcc agcagacggt cagcgcacaa cmacgcagac cagcttcaag cgtcggcatg      1380
     gggccaggga acggatggag caccgtgacc aggagagcgg gaggcaagac cwaaaaaggc      1440
     aagcgtgagc gcccggaagc cgtcattgtc caagcggaag ggaaaacata cagtgaaatt      1500
     ttggcgatgg tcaccagamg ggatgataac cagctctcag acttgggcag ctgtgtgaac      1560
     aaggtccggc gcacggcaaa tggcaacctc ctcctggaag tggccaaagc aagcgagaag      1620
     agcgcagaca aaatgaggga gaacatagcg caagtmcttg gcagcaacgc cgaggtccgc      1680
     gctataactg aggactccaa ggtgacggtc ttcgaggtca gaggtctcga cgcgctggtg      1740
     agggagacgg agcttccagc tgcaatcgct aagcagtatg gaatagatgc gagaaaggtg      1800
     aagattcgca gtatccgccc tagcttttct ggtacacaga cggccgtgtt cagcctgcca      1860
     gttcctcaag gaaaaatggt cacgagtcac aggcagatca ggatcggctg gtccttatgc      1920
     cggatccggg agttgggcgg tccaccgcgg tgcttcaagt gtctggagct aggccacatc      1980
     gcgatcagat gcaagagccc tatcgacagg agcgggaact gcttcaagtg cggtgagccg      2040
     ggccacatgg ccgcaggctg ctccaaggaa ccgcggtgcc tcacctgcgc cacagcgggc      2100
     ataaaggaca cgacgcacca gacaggcagc aaaaaatgcc cttccggttg cagtggtgct      2160
     agcacaacat cgacttcatg caactgattc agctaaacat gaatcactgc agggcggccc      2220
     aggatctgct catgcagaca gttcgagagc tgggcttgga ggtggcaatt ttgagcgaac      2280
     cttacaaggt cggaaacgat cgacgatggg ccgctgacat aaatggcaca gcagccctat      2340
     ggctttgcgg cggagacggg ctcgagatga ccaacatcag ggcgggcgat gggttcgtcc      2400
     gagcaaaaat tggagacttc tgggtgtaca gctgctacct agccccaagc gtatccgtga      2460
     aggacttcga acggatcatg gacgacctct gcagcgacct ccgagggaaa accaaagtgg      2520
     tggttggagg ggactttaat gcctgggccg aggagtgggg ttgcccatcc acaaacgcca      2580
     ggggacgcgc tgtcacagac accgtggcct cgcttgatgt tgtcctgctc aacgagggct      2640
     cccagcaaac ctttagcaga gccagtggtg gatctataat tgatctcacg ttcgtgagca      2700
     gctccttagc cagccgaaca tcctggagga tcggcgatgt gtactcagcc agtgatcacg      2760
     aagccatact tctgaccatt ggcgtcacag cgagcaacag actgccgccg gctgtacaca      2820
     ggaaggccta ccgacaggac acgttcagga cccaagcctt tgccagagcg ctggaaggct      2880
     tgtcggtctc cgatggggac actgcagacg atgcagcaaa caagctggca gctcgtctag      2940
     aggaagcctg cgatcaaagc atggaccagc gaaggacatt ccgcaaggac cattcgcctg      3000
     tgtactggtg gacggaggaa atcgcgagtc tgcggaggac ctgccatcgg gcaagaaggt      3060
     tggtccagcg tgccaggggc acaccgaacc tggaatccct caacgaaacg tacaaggctg      3120
     caaagaaggc acttaagcta tcgatcaggg acagcaagag ggaatgctac tggaagctct      3180
     gcgacgaact cgagaacgac ccttggggaa gagcgtacaa gatggttgtg aagcgtatga      3240
     gtgctggcaa tagatcgcca tcagacccgt cggccctaga agccatcgta caagcgcttt      3300
     ttccagcggg acgtaggcac tccattcccc gctgcactag tggaatcagt gactccatat      3360
     gtcctgtcac ggaggctgaa ctcctggcga ctgctagggt cctacccaat aaaaaggcac      3420
     ctggaccgga ctcagtcccg aatggagcag tcaaggccct gctctctctc cagacgaagg      3480
     cggtagcaga tttgttcaac aagtgcctag tggaagggac ctttcccgac cggtggaagc      3540
     gccaaaaact tctgctactc tcgaagccgg gaaagccagc gggagaaccc tcgtcgtaca      3600
     ggcccatctg tctgttggac accatcggga aggtcttcga gagggtcata gcagcaaggc      3660
     tgaacgccgc ccttgagagc gcaggaggac tttctcccaa ccaatatggg ttccgaaagg      3720
     gaaaatcaac cctggatgcg atcgggaaag taaccaggat tgcggctgaa gccatcgcag      3780
     gcgcaagatg gaagggaggg acgaaggagt attgcctttt agtgaccctc gacatccgga      3840
     atgcgttcaa cacggcggat tggggaagaa cgctggagtc actaaggtcc ttcaacatcc      3900
     ccgggtactt gctgaacgta gtccacagct acctcagcaa aaggcagctg tccgtcgaca      3960
     cctcatccgg accaaggatc tacgaggtca ctgccggagt cccacagggt tcggtgctcg      4020
     ggcctttgct gtggaacact atgtacgacg gtgtcctaaa gctcccaatg ccgagcaaca      4080
     ccagcatagt cggcttcgcc gatgacgtgg cgctggtagt ggtttccaag catgtgccaa      4140
     ccatagtcgc gactgccaac agggcgatta aagcggtgga ggcgtggctt tctgtggcgg      4200
     gcttggaact ggcagcacaa aaaacagagg ctgtcctaat cacgagcagg agagtggtgg      4260
     agacggcgga gatcctggtc ggtgggacca cagttcagtc acagcgtgcc ctgaagtatc      4320
     tgggagtaat gctagacaca cgcctgtcgt tccgcgagca cctcgagtac gcgaacaaga      4380
     aagcgaggga gacgacaaga tcgctctgca ggatcctgct gaacacgaga gggccgaaac      4440
     aggacaagag gatactcctc gcgagcgtgg tcaggtcgca attgctgtac gcggcaccgg      4500
     tgtgggcgga ggccacggct aaggatagct acatgcgaga ggtcaactcg acatatcgtc      4560
     tgtgcgctat cagaatatcg tgcgccttta gaaccatctc tgacgatgcg gttctagtca      4620
     tcgctggcca agtcccgctg ggagaactgg tacgggaatc caaggatatc cgcaccaccc      4680
     tgagtctcat ccaggatgat ccgagggcca aagccgaggc cagggcccgc tccagaatgc      4740
     agagcgtcag caactggcag aaagcatggg atatctcgag caaaggacgg tggacccaca      4800
     agctcatccc ttgcatcgag gcgtgggtaa atcgcaagca tggccaggtg gactactacc      4860
     taacgcaggc gctaagcggt cacggctgct tccggagcta cctaaagcag tacggacacg      4920
     agacggagga tgggtgcccg gagtgcggta gcgggattgc ggaggacgct cagcacgtcc      4980
     tgtttgagtg ccaccggttc aaccacgagc gccaagtgct ggaggagata gccggggcaa      5040
     gagtccaacc ggaaaccctc gttcccctga tgatagggaa ccaaaggacg tgggaggcag      5100
     cagcagcatt tgcagcaagc gttctgcgga cgctgcgatc gctggagagg gaaaggagag      5160
     gagcagcggt ttaggtggcc atttttcgcg cgaagcaatg ccttgcggcg gtaccgtgcg      5220
     aagtcgcccc taatcacgct tagtcaatat tgttagttta gatagtcatt gttgttgtta      5280
     aataaaggaa tacaaaaaaa aaaa                                             5304
//
ID   R1-2_DVi    repbase;    DNA;    INV; 5599 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5599
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1952-1952 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Several copies are flanked by (CA)n
CC   microsatellites, like Waldo elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           984..2468
FT                 /product="R1-2_DVi_1p"
FT                 /translation="MMNRNNKSTTPLGGQEEEGVCKADPFARRSCLASTPP
FT                 ATPVRAPQPTAPCREIEEKETPKRLRDPASPTNKPRSTPPKKSKANTQEIE
FT                 EIGSILDELLFMYHGKQPAMRHINLATKSMLARLKELQEVVKAXLTENLRM
FT                 RCSEESHKQMSHAEESAGSNSKCDTATQTEESGACSKPPTAAQKPTNEVTG
FT                 KNQILAPSNSKPAPTRKQQRSQPAEGKVPTQAREAKTPVKNTREVKNKWTE
FT                 VKGKLTRRKQPNRPDAILITCTESMPYADVLKMVKTAPALQALKNNVQGIR
FT                 KSAAGELILRLQKPSDPATDQLRVAISSALAGKAAVRTLQETVQMEVLDID
FT                 ESTTADEVLTALSASVEGDIPVEATPTMRAAYGGTQIASLALQPSLATKLL
FT                 ETGKVRIGWVICRIRQKIEPKRCFRCMGFGHTSTRCKSQHPVGKETCFKCA
FT                 GTGHKSGQCTHEAKCILCTRMGTGTNQAAHSTLSRNCPEYKKAYKALRNG"
FT   CDS           2464..5403
FT                 /product="R1-2_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVKFLQLNLNHCRAAQDLLAQTTRETRIDVAIISEPY
FT                 TPKHIGVWHESLDAGAALWSCGQAPYQLTQRMARKGFARAKCGRIYVYSCY
FT                 IPPSIPLAEYTAIIEDIAQDAHGKSPVIIAGDFNAWATEWGSSRTTPRGTI
FT                 LLDIFASLNVCLLNIGTRSTYSKAGRESIIDLTFASPDVARDAKWHVSDVY
FT                 THSDHFAVITDTYQLGSRGASRRLQHTGYKMNTMDLERLLPMVEGLGIRGD
FT                 ANSSADAIAETITNACDAILTKVRKGGNAHRPVAWWNEDIAKARKECLAAR
FT                 RKSQRSRPSPNFEHHLQNFRAKRKLLKEAIRRSKSRYFQKLCDAADAEPFG
FT                 LAYKLVMGRLCRQPMPTNPEQLKQIVLTLFPRQTPGIAPQLPANGINDCAP
FT                 TDDNEVLSIAAKLKADKSPGPDGIPNGVIKAVITAQPRSFVELYNQCIAEC
FT                 TVPRRWKLQRLVLIPKPGKELDDPSSYRPLCMLDTMGKIFERIICNRLECK
FT                 LAEVRGLSERQFGFRKHRSTTDAIRAVAELAEDAIQGTRWTGGTKQYCLVC
FT                 TLDVRNAFNSANWTKILEALTARHIPSQLIKLVTSYFQDRVLNYDTEDGQR
FT                 QYRVTGGVPQGSVLGPLLWNVMYDGVLRLCLPEGNTIIGFADDIAVVTVAK
FT                 KLDEVTLRSSAAIDRIIDWLSQNGLTLAEQKSEAVLISSRKIVETTSLRVG
FT                 SAIIKSKPAIKYLGVMIDHRLSYKQHLEYISHKAASVTTAISRMLANTKGP
FT                 RQRSRRLIAGVVTSTILYGSNIWAPAMEVASYSRGCNAAYRRCALRVATCF
FT                 RTVSEDAALVLAGMIPLGLMAAERQSGATTNRQLRDNTIDQWQSKWDASSS
FT                 GRWTHRLIPNLKLWLQRRHGDVDHYLAQIFTGHGCFKAYLHRFNHEDDPFC
FT                 EHCGYGVIEDAEHALFYCPLYSRERDKATAGRNDLSPENLVARMVATENGW
FT                 TAVANMASAIMKELRRQERIRRGID"
XX
SQ   Sequence 5599 BP; 1657 A; 1487 C; 1461 G; 992 T; 2 other;
     cacctgcaag actgtggagg tgaacacgag aatggagcaa acccgcgcac tcacctggat        60
     gacgggatga tggcgaggac tacctgatgg tatatatcca accctaaacc tgatccaagt       120
     aagcaagttg agcactttct cagcgaaact atcatggcga cattgtttat gctcaagcac       180
     atgagcaaga caaaagctct ggacagctgg ttggttgtac agtgctgcca accgaagtac       240
     atgcgtcaac gaaaaaagca attacgcgcg aaagtatgcc acgctgtgtg ggtatacatg       300
     aggacaaagg aagatattgc atgcttttag gcttttacgt tttactcgca ttgcagctga       360
     agactcgagg caagaaattg tacagaaggc cacggatccg accaagtcaa ctcctgccgc       420
     atagcggtgt actaaaaagg ggcgctggcg accgagctgg agcggttaaa ctcccatctg       480
     tcaaacgcca gtgagaaacc attggccacc gttggagcca caaatcagca gcgatgagcg       540
     ccacaactgg cagcacgccc gtcaatgcaa gcaagcaaac tccaccccca cactgagccc       600
     agtaaagtgt ggaagcgacc cactggaccc cccttacgta actgtagaaa tgggctgacg       660
     agtcgggcat tctaggacct taataggcaa gctgacacct tgtcgaaacg gctcctaggc       720
     taatgctagc ctcgcccccg tcccgctaaa accttggcag gcctcgtaga acgcttatcg       780
     tatgtcgcca ttcagttggc cgtgcaggct cagttgatat tccctgacta gcactgatct       840
     ggctctgaac tccgtctccc ataaggaccg gagtcaaccc tcgcgtggac ctcactccat       900
     ggaaaggcaa ccacgggatc gcgaaggtga ctgcacaata cacacgacaa caacggcttc       960
     gagttgggac ccaattaatc acaatgatga accgaaacaa caaaagcacc accccactag      1020
     gtggacaaga ggaagaagga gtatgcaagg ccgacccgtt cgctaggcga tcatgcctgg      1080
     cgagcacgcc cccggctaca ccagtaaggg cccctcagcc cactgcacca tgcagggaaa      1140
     ttgaagagaa agagaccccg aaaaggctta gggacccggc cagccctacg aacaagccac      1200
     ggagcacccc gcccaagaag agcaaggcaa atacccagga gatcgaagag attggctcga      1260
     tactggacga gctactgttc atgtatcatg gcaagcagcc agcgatgagg cacataaact      1320
     tggccactaa gagcatgcta gcgagactaa aagagctgca agaagtagtc aaagcgcakc      1380
     tcacggaaaa cctacgcatg cgatgcagcg aagagtccca taagcagatg agccatgctg      1440
     aagaaagcgc cggaagcaat tctaaatgcg acacggcaac gcagacggaa gaaagcggtg      1500
     catgcagtaa accaccgaca gcggcgcaaa aaccgacgaa cgaggttaca ggaaaaaatc      1560
     agatcttggc cccaagcaac tccaagccgg caccaactcg caagcagcaa cgttcacagc      1620
     cggcagaggg caaggtaccg acccaagcgc gagaggcaaa aacaccggtc aaaaataccc      1680
     gagaggtaaa aaataaatgg actgaggtga agggcaagct caccaggcgg aaacagccca      1740
     accgaccgga tgcgatcctg atcacgtgta cagagagcat gccatacgca gatgtgctca      1800
     aaatggtgaa aacagctcct gcactgcagg cgctcaaaaa taatgtacag ggcatccgca      1860
     aatcagcagc aggagaactg atcctcaggc tccagaagcc atcggaccca gctaccgacc      1920
     agttgcgtgt ggcaatcagc agcgcactgg ctggaaaagc tgccgttaga accttgcagg      1980
     aaacggtgca aatggaggtt ctagatatcg atgagtccac gacagcagat gaggtcctca      2040
     cagctctctc tgcctcggtg gaaggagaca taccagtaga agcgacgccc actatgaggg      2100
     cggcctacgg aggaacacag atcgcatcgc tggccctgca accgagccta gccacgaaac      2160
     tgctcgaaac cggcaaggtc cgcatagggt gggttatatg ccgaatacgc caaaagatcg      2220
     agccaaagag atgcttcaga tgcatgggat tcggccatac atccaccagg tgcaagagcc      2280
     agcatccggt tggaaaggag acatgcttta aatgcgcagg tactgggcac aagtctggac      2340
     agtgcacgca tgaggcaaag tgcatcctct gcacaagaat gggcacgggc actaaccaag      2400
     ccgcgcactc aactctgagc aggaactgcc cggagtataa gaaggcctac aaagcgctta      2460
     gaaatggtta agttcctgca acttaaccta aaccactgca gagcagccca ggatctgctc      2520
     gcacaaacga cccgggagac gagaattgat gtagccatca ttagtgaacc gtatacaccc      2580
     aaacatatcg gagtgtggca cgaaagccta gacgctggag cagcactatg gagctgcgga      2640
     caggcaccat accagctcac tcaacggatg gctcgcaaag ggtttgctag ggcaaaatgt      2700
     ggtcgcatat acgtttatag ctgctacata ccaccaagca tacccctggc agagtacaca      2760
     gccattattg aagacatcgc acaggacgcg cacggaaaat ctccagtgat aatcgccgga      2820
     gacttcaacg cgtgggccac agaatggggc agcagcagaa cgacaccaag gggaaccatc      2880
     ctgctggaca tatttgcttc gctaaatgtc tgtctgctga acatcggcac aagaagcact      2940
     tacagcaaag cgggtcgcga gtcgatcata gacctgacgt ttgccagccc agacgttgcc      3000
     cgagacgcca aatggcatgt atcggatgta tacacccaca gcgaccactt tgcggtgata      3060
     acggacacct atcaacttgg aagcagaggc gccagtagaa ggctccaaca cackggatac      3120
     aagatgaaca ctatggacct ggaaagactc ctccctatgg tagaaggact tggcataaga      3180
     ggcgacgcca acagctctgc tgacgcgata gcagagacta tcaccaacgc atgtgacgct      3240
     atactgacaa aagttcgtaa gggtggtaac gcacatagac cggtagcctg gtggaacgag      3300
     gacatagcca aagcgcgcaa agagtgcctc gcagctaggc ggaagagcca acggtcaaga      3360
     ccgtccccca attttgagca ccatctgcag aacttcagag ccaagcggaa attactcaag      3420
     gaagctatca gacgcagcaa atcccgatac tttcagaagc tctgcgacgc tgcggacgcg      3480
     gagccctttg gactggctta caagctagtc atgggaaggc tatgcaggca accaatgcca      3540
     acaaacccgg aacagctcaa acaaatagtc ctaacgctct ttcctcgaca gacacctgga      3600
     attgcaccgc aactaccagc aaacggaata aacgactgtg cacccaccga cgacaatgag      3660
     gtactgagca ttgctgcgaa gctaaaggcg gacaaatctc ctggaccaga cggaataccg      3720
     aacggggtaa taaaagctgt cattactgca cagcccagaa gcttcgtgga gttgtacaat      3780
     caatgtatag cggaatgcac agtaccacgt agatggaaac tccagcgact tgtgctcatc      3840
     ccgaagcccg gcaaggaact agatgatccc tcctcatacc gccccctgtg tatgctggac      3900
     acgatgggaa aaatatttga gcggataata tgcaatcgcc tagaatgcaa gcttgctgaa      3960
     gtgcgcggtc tgtctgaacg acaattcggc ttcaggaaac acaggagcac cacggatgcc      4020
     atcagggccg tggctgaact agcagaagac gctatccaag gcacaagatg gacaggtggc      4080
     accaaacagt actgcctagt ctgtacgttg gatgtcagga acgcgttcaa ctcagccaat      4140
     tggacaaaaa tactagaagc gctaacggcc agacacatcc cgagccaact aataaagtta      4200
     gtgaccagct acttccagga cagagtgcta aattacgaca cagaagacgg ccaacgacag      4260
     tacagggtaa ctggaggcgt tcctcagggc tctgttctcg ggccgctact gtggaacgtc      4320
     atgtacgacg gagtactgcg cctttgccta ccagagggca acacaatcat tggtttcgcc      4380
     gatgacatcg ctgttgttac tgtggcgaag aaactcgatg aggtcactct taggagcagt      4440
     gcggccatcg acaggataat tgactggcta tcccagaacg gactcacgct agcggagcag      4500
     aagtcggagg cagtcttaat aagcagcaga aagatagttg agacgacatc gttgcgcgtt      4560
     ggcagtgcta tcattaagtc caagcccgcc atcaaatacc tgggcgtcat gatagaccac      4620
     agactgtcgt ataaacagca cctggagtat attagccaca aagcggccag tgttacaaca      4680
     gccattagcc gaatgttggc gaacaccaaa ggaccaaggc agaggagcag aaggctaatc      4740
     gctggagtgg tgacgtccac aatcctctac ggatccaaca tatgggcccc cgcaatggag      4800
     gttgcatctt acagccgagg atgcaatgct gcataccgac gatgtgcatt gcgtgtagcc      4860
     acctgcttcc gcactgtatc ggaagacgcg gccttagtac tggcaggcat gatcccactc      4920
     ggcctgatgg ctgccgaaag gcaaagtggg gcaaccacca acaggcaact gagggataac      4980
     accatcgatc aatggcaaag caaatgggat gcgagctcaa gtggcagatg gacccacaga      5040
     ctaatcccaa acctgaagct ttggctacag cggcgacacg gcgatgtaga ccactacctg      5100
     gcacaaatat ttactgggca tggctgcttt aaagcgtacc tgcacaggtt taatcatgag      5160
     gacgacccct tttgcgagca ctgtgggtac ggtgtgattg aggacgcgga gcacgcattg      5220
     ttctactgcc cactctatag tcgcgagcga gacaaagcga cggcgggcag aaatgatttg      5280
     tctccggaga atctcgtggc gcgaatggtg gccactgaaa atggatggac agccgttgct      5340
     aacatggcat cggctataat gaaggagctg cgacgacagg agaggatccg acgcggcatc      5400
     gactgatgag cggctgatat acagccgtac cccgccctgc gaagtagtac tttgcggttg      5460
     tcccgcagga gcgggctaca actttctact ccccacaaaa taccctttcc ttctttgttt      5520
     gtcttagttc ccccttgtaa aatgttaagc cgttattttc ttttcttcca aaataaaaaa      5580
     aaaaaaaaaa aaaaaaaaa                                                   5599
//
ID   R1-2_DWi    repbase;    DNA;    INV; 5398 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5398
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1963-1963 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98% identity.
CC   This family shows no target site specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1176..2267
FT                 /product="R1-2_DWi_1p"
FT                 /translation="MVAISAPSQHPTANCGMKDELARMKTVLDGVKTQLES
FT                 RPRANKPKQKTRPLTFAAVVAKSATPNAAGTRQKAKDREAVTRPSVVLRQS
FT                 TTQNTSAAESAEGTIPLQKVANKWETVKRPKRKSRRRPDALMVQCSDPANY
FT                 AKVLEAVQTDPAMLSHKEGVCGVRRTAAGELLLEMKKHDDGGTLVLHKALQ
FT                 QALGDEGRVKLITERVTVEIRDIPFYSKLEDVLDAAVKLTEETLPEESFPK
FT                 MRKAYRGTKTATMLLNANQASKMIAARTVRIGLAECRIRAKIEPRRCYKCL
FT                 DFGHTSARCRCKKEHEAGSLCFNCGESGHASKDCNNDAKCILCTRYGEKNA
FT                 AHNTLSRGCPLYVKATNKCKN"
FT   CDS           2221..5205
FT                 /product="R1-2_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="AEDARCTSRQQTSAKIKFLQLNINHCRAAQDLLKQTV
FT                 IDLGIDIALLSEPYGVKQDAAWAQNNIMGAAIWSCGHSPLQLECVGRHRGY
FT                 TRAKCNGISIFSCYIAPSVDIDDFAAIIDCIAADARRSPPVIIAGDFNAWA
FT                 MEWGSVKTTARGRILLDSFASLNVSLLNIGNTQTFSRAGRNSIIDVTFAST
FT                 SLARNATWIVSDVYTHSDHSAIIFECGGQTTRLARPKFSLWSQETLSEEAF
FT                 LFMMNNAQRSAGDAETQVKRLCSAISEACDASMIRKRQGGSTRKPVHWWSH
FT                 EIAEARKECLKARRKQQRARGSPSFQRLLDAYKTRRALLNRAIKQSKADCW
FT                 KKLCADADDQPFGAAYKLVMGKLAKRPSPTDGVLLANIVKTLFPERPILQH
FT                 PVAGAHQETNPGYIISDDEIVLAAKRIKSKKSPGPDGFPAGVIKLIAMNQP
FT                 SKLADVFNSCLCQGVFPARWKRQRLVLLPKGGKTDEPSAYRPLCMIDVLGK
FT                 VFESIIRNRLEAHIDARNGLSEHQFGFRKKRSTVDAIHTVTEIAKKAIEGQ
FT                 RWKGGGKEYCLITTLDVRNAFNSASWMCIFESLQRLAAPEYLIAMIRSYFE
FT                 DRILIYETDRGQQEYKITGGVPQGSVLGPTLWNVMYDAVLRLDMPPRTQII
FT                 GFADDIAVVTVAKELGEAEARTNDAVQSIVSWMQRNSLSLAAHKTEAVLIS
FT                 SRKRVETAIIHVAGCVIRSKPAIRYLGVMVDHRLTYKHHLQYVADKAARAT
FT                 SALARIMSNHGGPRQKSRWLITTVVRSVLLYAAKIWAPAMAIQSYSRACRS
FT                 QYRACALRVICAFRTVSEDAALVISGMLPLDIVALEASSNSTAAQKREVSI
FT                 RTWQDRWRHSSHGRWTNRLIPNVREWVSRPHGQTDFYLTQLLTGHGCFKSY
FT                 LHRFKHESDPYCTYCTGPIEDAEHVFFVCPRFTAEREELSQGIGRPFIVHD
FT                 LMDILLSSQNNWLAVSHLAAVIIQSLRRAERQRNQNSNSR"
XX
SQ   Sequence 5398 BP; 1560 A; 1326 C; 1377 G; 1134 T; 1 other;
     agagaggttt gtttatccca ccagtgcggt cgcgttctgt agtcgctccg tctaacgaac        60
     ctgaattcgt gtgtgtaccc tgcaactaat aaaagggaat actagtagag gctcattgag       120
     gaggtgtcgc tcacctggca ccaaaatcag ctgagcccat ccaccgtggt ggagtgcaac       180
     cggtaacaaa atattctgtt tgccttaaaa attagccgtt ccaatcggag ttgggcgctc       240
     cgcaaggggt gaggggttca tattttcccg cgcttctctc gccaagggct ggaactcctg       300
     gaactttctc ctcctttgca ttgtcgatct ccttttgttg ctgaactttc taataccaac       360
     taccgccgat aacaacagct gacaactgca gctgtgcacc agtgttggaa agcagcgccc       420
     tatcttggtc accagagggc gcccaagccc tgctggccag cccccgaaac attgcatact       480
     ttcgggaaca gcattttggc cgccaaaatt aaattggaaa tcgccgactg aactacatat       540
     cttcttcttt tctctaattc tcttttttcc cttcgggaag ccctaaatcc gcatagcgtc       600
     tgtcctcata ttgagcggct tgtggtctgc gtctgcgtcg catcggccgg cagcatatta       660
     acgaactttc gtacctggca gtaggtataa aatgcatcaa agtttataaa aaaaatggct       720
     ggaaaaaacg aaattactcc aggtggcagc cacaaaagtg gaaatccacc cgcgaatcaa       780
     accgcggccg gggcacggat tctggaggcc cctacatcca ttaatattaa caggaaaact       840
     actgcatcgg tggcacactt ggccgatgca gcggactatg caacaagcag taatggctgt       900
     aaaatgccag cgggagcaac tgccttttct cgaagcagct taatggccag aacgccgcca       960
     acagctacgc attcggctcc gacggctata aacttgaagt ctctgccagc ttttacacca      1020
     gcagcagtcg tcacagtaga ggatacgcca aaaagaggtc gtgaattaag tccacctgcc      1080
     gacaatcaga agcggcacca aaaaggccaa gaagcgtcca gacatctaaa agacagatca      1140
     ctgaactcgg agcacttgtc gaccaaatag ctgcaatggt cgctatttct gcaccaagcc      1200
     agcatccaac cgcaaattgt ggcatgaagg atgaattggc aagaatgaag acggttttgg      1260
     atggtgtaaa aacccaacta gaaagcagac ctcgggccaa taagccaaaa cagaagacgc      1320
     ggccactgac gtttgcggct gttgtggcca aaagtgctac accaaatgct gcaggtacaa      1380
     ggcaaaaggc aaaggatcgg gaagctgtca cacggcccag cgtggtgtta agacagtcaa      1440
     ccacccaaaa tacatctgct gcagaatcgg ctgagggtac catcccctta caaaaagtcg      1500
     ccaacaaatg ggaaacggtc aaaagaccta aacgaaagag tagaagacgg cctgatgctt      1560
     tgatggtgca atgcagtgac cctgcaaact atgcaaaagt actggaggca gtccagactg      1620
     accctgccat gctctcgcac aaggaaggag tttgcggagt gcgtcgaaca gcagcaggag      1680
     aacttctcct ggagatgaaa aagcatgacg atggcggtac gctagtacta cacaaggcgt      1740
     tgcagcaagc gcttggcgac gaaggacggg tcaagcttat cactgaaagg gtcacagtcg      1800
     aaatcaggga tataccgttc tattccaaac tcgaggatgt tcttgatgca gccgtcaaat      1860
     taacggagga aactctgcca gaggaatcgt ttcccaagat gcggaaggca tataggggta      1920
     cgaaaactgc aacwatgctg ctgaatgcca atcaggcatc gaaaatgatt gctgccagaa      1980
     cggttcgcat tggtcttgca gaatgcagaa taagagccaa gatagagcca aggaggtgct      2040
     acaaatgtct cgactttggg catacatcag ctaggtgcag gtgcaagaag gagcacgagg      2100
     caggcagcct atgtttcaac tgcggagaga gcggtcacgc atctaaagac tgcaacaacg      2160
     acgcaaagtg catcttatgc actaggtacg gcgaaaagaa cgcggcacat aacactctga      2220
     gcagaggatg cccgttgtac gtcaaggcaa caaacaagtg caaaaattaa gtttctacaa      2280
     cttaatataa accattgcag ggcagcacag gatttgctga agcagactgt tattgatctg      2340
     ggcatcgaca tagcgctttt gtcggaacca tatggggtaa aacaggacgc ggcctgggcc      2400
     caaaacaaca tcatgggcgc agcaatatgg agttgcggac attctccatt acaattagag      2460
     tgtgttggca gacacagagg ctacaccagg gcgaaatgca acggcatatc catttttagc      2520
     tgctacatag ccccaagtgt ggatatagac gactttgcag ccattattga ctgtatagcc      2580
     gccgacgcca gaagatcacc gccagtgatc attgccggcg actttaacgc atgggcgatg      2640
     gagtggggaa gcgtcaaaac cacggcaaga ggaagaatac tgctggactc cttcgcctct      2700
     ctgaacgtga gtctactgaa tatcggcaac acacaaacat tcagcagagc aggacgtaat      2760
     tcaataatcg atgttacttt tgcaagcacg agcctggccc ggaatgctac atggatagtt      2820
     tccgacgtat atacgcacag tgatcatagt gcaataatat tcgagtgtgg tggccaaaca      2880
     acgcgcttgg cacggcctaa gttctcgtta tggtcacaag aaaccctaag cgaggaggct      2940
     ttcttgttta tgatgaacaa cgcacagagg agtgcagggg atgcagaaac ccaggtaaaa      3000
     aggctatgtt ctgccatcag cgaagcctgt gatgcgtcaa tgatccgcaa gagacaaggt      3060
     ggaagcacac gcaaaccagt gcattggtgg agccatgaaa ttgcagaagc gcgaaaagaa      3120
     tgccttaaag ccagacgcaa gcagcagcgg gccagaggga gtccctcgtt ccaaaggcta      3180
     ctggacgctt ataagacgcg gcgtgcactg ttaaacagag ccataaagca aagcaaggct      3240
     gactgttgga agaagctctg cgcggatgcc gatgaccaac ccttcggagc ggcgtacaag      3300
     ttggtaatgg gcaaacttgc caaacgccca tcccccacag atggtgtact gctcgcaaac      3360
     atcgtaaaaa cgctattccc agagcggccg atattgcagc atccagttgc aggagcccat      3420
     caagagacta atcccgggta tattattagt gatgatgaaa tcgtgctggc tgccaagcgg      3480
     atcaaaagca aaaaatcgcc tggccctgat ggatttcctg ctggtgtcat caagctcatc      3540
     gcaatgaatc agccctcgaa actggccgat gtattcaact cctgtctgtg ccaaggagtc      3600
     tttccagcaa gatggaaaag gcagaggctg gtactactcc caaaaggagg gaaaacggac      3660
     gaaccttcag cgtacaggcc actgtgcatg atagatgtgc tgggtaaggt gttcgaatcg      3720
     attattcgca acagactaga agcccacatc gacgcccgga atggactttc ggagcatcag      3780
     tttggcttcc gaaagaagcg tagtacggtc gacgcgatac ataccgtcac cgaaatagcc      3840
     aaaaaagcca tagagggcca gcgatggaaa ggaggaggca aagagtactg ccttatcacc      3900
     actctggatg tccgaaacgc attcaactca gcgagctgga tgtgcatatt tgagtcacta      3960
     caacgcttag ctgcaccaga atacctgatt gcaatgattc gcagttattt cgaagaccgg      4020
     atcctgatat acgaaacgga cagagggcaa caggaatata aaataacagg cggagtccca      4080
     caaggttcgg tgcttggccc aaccctgtgg aacgtcatgt atgacgcagt gctccgtctg      4140
     gacatgccac caaggacgca gatcattgga ttcgcagacg acatagcagt ggtcacagtg      4200
     gcaaaggagt tgggagaagc agaggccagg accaacgacg ccgtgcaatc aattgtatcc      4260
     tggatgcaga ggaattctct gtctctggct gcacacaaga cagaggccgt attgatcagc      4320
     agcaggaaac gtgtggagac tgcaatcatt catgttgcag gatgcgtcat ccgctccaag      4380
     ccggcaataa gatatctcgg ggtgatggtc gaccataggc taacatataa gcaccatctg      4440
     caatatgtag ccgacaaagc agcaagggca acatcagcct tagcaaggat aatgtccaac      4500
     cacggtggcc cccgacagaa aagcagatgg ctcatcacca cggtggtacg atccgtactc      4560
     ctatatgcag caaagatatg ggctccagcg atggcgatcc agtcatacag ccgcgcctgc      4620
     agatcgcaat acagagcctg tgcgttacgt gtcatatgtg cgttccgaac tgtatccgaa      4680
     gatgctgcct tggtcatatc aggcatgttg ccacttgata ttgttgcact agaggccagt      4740
     agcaacagca cagcagctca aaaaagagag gtgtccattc gcacatggca ggaccgctgg      4800
     cgccattctt cccacggacg ctggacaaac cgccttatac ctaatgtgcg ggaatgggtg      4860
     agtcggccac acggccaaac agatttttat ttgacgcaac tcctaacggg acatgggtgt      4920
     tttaaatcat atttgcatag atttaagcac gaatctgacc cctactgcac atattgtacg      4980
     gggccgattg aggacgcaga gcatgtcttt tttgtctgtc cgcgattcac tgctgaacgg      5040
     gaagagctaa gccaaggcat tgggaggcca ttcatagtcc atgacttgat ggatatctta      5100
     cttagctcgc aaaacaattg gctcgcagtt agccacctag ctgcagtgat catacagtcc      5160
     ctgcgtcgcg ctgaacgtca gcgcaaccag aattcaaact ctagatgagt atctagatga      5220
     ggctttcatg ccatctcccc ctcgtgaagt aataacttca gcgttggttc cgcgagaggg      5280
     atacggaagt agggtaggtt ttagtgcggt gaggtgaccc ctaaccaagg tcgataccaa      5340
     gtcccacact tttcggcttt caatgctttc ccccctatac aaaaaaaaaa aaaaaaaa        5398
//
ID   R1-2_DYa    repbase;    DNA;    INV; 3557 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 17.09, Created)
DT   22-MAR-2011 (Rel. 17.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3557
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1934-1934 (2012).
XX
DR   [2] (Consensus)
XX
CC   The 3' flanking sequences are (TTA)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           396..3356
FT                 /product="R1-2_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKILQANMHRSRTANDLLHQIVIENQIDVVIISEQYK
FT                 RREEGVWLEDNTKTAAIWIPDPTTVPHRNDKRGRCHVLTQIRNWTIASCYL
FT                 TPSDDIQTFQTKLEGIEDNARQIRGDLIIAGDFNSRAIEWGMPSTDSRGRR
FT                 VLNMAARIGILTANVGATATFNRLGNEGTIPDITLVSENGAHKITDWKVLD
FT                 TYNGSDHNYITFNIAENAVTTVAPKRKGWNVKRLDKARLILEIDARQNRQS
FT                 GGDIVNQNMATIKQACNAAMPKMGNPRRQGQEVYWWTDEIKTLRETCIKNR
FT                 RRLTRARRRGQFTEQESQFKKSKKDLTTAIRKSKTEKWKSLCNDVNTDPWG
FT                 MGYKIVMKKLRARRTTPDLEEGQMDHIVKALFPDHTYSFSRSTTPIADEQV
FT                 ELFTVDELQRAAKTLKRRKAPGPDNIPAEVLTVIAENRPQILLDMYNECIT
FT                 SGKFPDTWKLQRLVLISKGKGDPLTPSAYRPLCMLNTTGKLLEKMIKPRLS
FT                 AAIERGGGLSPRQHGFRPGRSTIGAIQEVVSQALSSQQGNHFSRPVVLLAT
FT                 LDVKNAFNSVQWGNIIDALKRRFQISGYLMRIIQNYLDNRRLLYQTIAGEK
FT                 CIDITSGAAQGSILGPELWNISYDEIFHLEMPDDTFLVGYADDIVAVITAR
FT                 NTEYAQRKLTQVMTRVKRWLNSHDLKLADEKTELLLVTRKRIPLEIDMRVG
FT                 ENVIRTRKDIKYLGVRLDSKLTFSSHIQETRKRATVTTKSLSRLMANVGGP
FT                 LQSRRKLLMEVSNAIMLYGCEVWAGTLETACRSKPLLEVQRTMALRIASAY
FT                 RTVSGPAASVIGGAIPIDLIAKERKRIYEIRQAGETTRALIARSRDETLQQ
FT                 WQEIWAAEEKGRWTARLIPNLVAWTARAHGEVNYYITQMLTGHGYFGAFLH
FT                 SIGKRNDARCVYGDAEMDNVEHTIFQCGKFGSARRCLEELVGAITPENIVT
FT                 KMIDSESAWXHIAGFVETILRAKKPDLNETTG"
XX
SQ   Sequence 3557 BP; 1236 A; 769 C; 893 G; 658 T; 1 other;
     agaaggaata ggcgatacaa gccaagaaat tgttaataca cctgacagga gtaaataggt        60
     cagaacaaag gcgagccttt gttacactac ctatgaggga cgcgtcaaag atattggcgg       120
     agcagagaat aaaaatagga tggacccgct gccgggttaa gcggtgtctt gacataaaga       180
     gtatgcttta agtgtttcgg ggtcggacat gtgcaaaata actgcaacgg accggatagg       240
     agagacctct gcatcagatg tggtgaaagc ggacataaaa tgaagacttg cacaaaggca       300
     cccagatgtt gtatctgtgc atcggagaac aggagcgacg ttggacacct ccctgggaca       360
     gcgaactgct ctagcgtagc cagaaaagga aagccatgaa gattcttcaa gctaatatgc       420
     atagaagcag aacggcaaac gacctgctgc accaaattgt gatagaaaac caaatcgacg       480
     tggttatcat ttctgaacaa tataagagac gggaggaagg ggtttggcta gaagacaata       540
     caaagacggc ggcaatatgg atccccgacc ctactacggt tccacacaga aacgacaaaa       600
     gaggaagatg ccacgtccta acacaaatca gaaactggac gatagctagc tgctacttga       660
     ccccaagtga cgatattcag actttccaga cgaaacttga aggtattgaa gacaacgcaa       720
     ggcaaataag aggcgacctt ataatagcag gtgactttaa ctcaagagca atagaatggg       780
     gtatgccgtc aaccgactct cgaggccgta gagttctcaa tatggcagca agaatcggaa       840
     tactcactgc aaatgtagga gcaacagcca cattcaatcg actagggaac gagggtacaa       900
     tccctgacat aacactagtg tcagaaaacg gcgcacacaa aatcacagac tggaaagttc       960
     ttgacaccta caacggaagt gaccataact atataacgtt taacatagca gaaaacgcgg      1020
     taactacagt agcaccgaag agaaaagggt ggaatgttaa gcggttggac aaagcacggc      1080
     tgatactaga gatcgacgca agacaaaacc gacagagtgg cggagacata gtcaaccaga      1140
     acatggcaac gatcaaacaa gcgtgcaacg ctgcaatgcc aaaaatgggc aaccctcgaa      1200
     gacaaggcca agaagtgtac tggtggacag atgagataaa aactctcaga gaaacgtgca      1260
     tcaaaaacag acgccgcctt actagagcta gacggagagg acaatttaca gaacaggaaa      1320
     gtcagtttaa gaaatccaag aaggacttga ccactgccat tcggaaaagt aaaacggaga      1380
     aatggaaaag cctctgcaac gacgtcaata ctgacccatg gggtatgggg tataaaattg      1440
     tgatgaagaa gcttagagca agaagaacaa caccggacct ggaggaagga caaatggacc      1500
     acatagttaa agcactattc cccgaccaca catatagttt ttctagaagt accacaccaa      1560
     tagcagatga acaagtcgag ctcttcacag tagatgaact acagagagcg gcaaaaacgc      1620
     taaaaaggag gaaggcccca ggacccgaca atatcccagc agaggtccta acagtgattg      1680
     ccgagaacag accccaaatc ctgctggata tgtataacga gtgcattacc agcgggaaat      1740
     ttccagatac ctggaagctg caacgtttag tcctgataag caaaggaaag ggggatccct      1800
     taaccccgtc agcttatcga ccactttgca tgctaaacac aaccggaaaa ctactggaga      1860
     aaatgattaa gccgcgacta tcagcagcaa tcgaaagagg gggtggcctt tccccgaggc      1920
     agcatggctt tagacctggt aggtcgacca ttggagcaat acaagaagtc gtcagccaag      1980
     ccctcagcag ccaacaaggc aaccacttct ccagaccggt agtactttta gcaactcttg      2040
     acgtgaaaaa cgcattcaat agtgttcaat ggggaaacat aattgatgct ttgaaaagac      2100
     gattccaaat ctcaggatac ctaatgcgga taatacaaaa ctatcttgac aacagacgac      2160
     tactgtacca aacaatagca ggagagaaat gtatagacat aacttcagga gcagctcaag      2220
     gatcaatact tggaccggag ctatggaaca ttagctacga cgaaatcttt catctagaaa      2280
     tgccggacga cacgttttta gtgggctacg cagacgacat agtcgctgtc attacagctc      2340
     gaaataccga gtacgcacag cgcaagctga cacaagtaat gacgagagta aaaaggtggt      2400
     tgaactcaca cgatctgaaa ctggctgacg aaaaaaccga gctcctgcta gttaccagaa      2460
     aacggatccc attagaaata gatatgagag ttggggaaaa cgtaataagg acgcggaagg      2520
     atataaagta cctaggagtt agactggact caaaactgac atttagctca cacatacaag      2580
     agacgaggaa acgtgcaacc gtgacgacta agtcgcttag cagacttatg gcaaacgtag      2640
     gcggccctct acaatcaagg cggaaactct tgatggaggt gagtaacgca atcatgctgt      2700
     acggatgtga ggtctgggct ggcaccctgg agaccgcctg caggtcaaaa cctttactgg      2760
     aggtgcaaag aaccatggct ctacgaatcg cgagcgcgta tcgaacggta tccggccctg      2820
     ctgcatcagt aatcggaggc gcgataccaa tcgatctaat agccaaagag agaaaacgga      2880
     tctatgagat aagacaggcg ggagagacga cgagagcgtt aatcgcacga agcagagatg      2940
     aaacacttca acaatggcaa gaaatatggg cagctgaaga aaaaggaaga tggacagcta      3000
     gactgatacc aaacctggta gcatggactg caagggcgca cggagaagtg aactactaca      3060
     ttacccagat gttaacagga cacggttact ttggtgcgtt cctacattct ataggaaaaa      3120
     gaaatgacgc cagatgcgta tatggagatg cggagatgga caatgttgag cacaccattt      3180
     tccagtgcgg aaagttcgga tcggcacgta gatgcctgga ggaacttgtt ggagcaataa      3240
     ccccagaaaa tattgttaca aaaatgatag acagcgaatc agcctggama catatcgcag      3300
     gatttgtaga gaccattctc agagctaaaa agcctgattt gaacgaaaca actgggtaat      3360
     ctggacgcag aaaaaagatg agagcgcata gcccttaact ggcaccactt cgaagtaatg      3420
     gcgaaagctt tcccggggtg gaaaaacggc caaaggcgag ggggggtttt agtgggtgca      3480
     agccccacat acctcttttg cgacggcaaa cgggagatgc gtgaggcatt ccccctcctc      3540
     aacccaaaaa aaaaaaa                                                     3557
//
ID   R1-2_Hmel   repbase;    DNA;    INV; 4904 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a R1 element from Heliconius melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4904
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1360..4554
FT                 /product="R1-2_Hmel_1p"
FT                 /translation="YXSPSQGRGGATHGGSIMALRVLQANINHCARAQDLL
FT                 VQSLAQWSIQVAVVSEPYSVPDRDNWVADNXGVVTIITQVAAGSPPFSRVE
FT                 KGAGCVAALVGDLVVVGVYFSPNRTLAEFEEFLIRLGEMVERFRPAEVXVA
FT                 GDFNAKSSVWGSATTDVRGVTLSEWVVATGLSVLNRGTKNTCVRRLGGSVV
FT                 DVSFASPALAXRVRGWRVLDDVETLSDHLYILYEISTHSAVQPAPXPNSRE
FT                 YGPRWQLGRLDRXLLEEAAIVESWLPQSLASAEDAASWAQGALTRICDASM
FT                 PRSGRRPQRRQVYWWSWEIAQLRNTCVAARRQYSHYRRRVQKVQEEEDRLY
FT                 RVYVEARTQLQEEIGRVKGESHDRLIAGIDQDPYGTPYRMVLGRLRAWAPP
FT                 LTQTLQPDILRGVLSSLFPQRASFAPPSMARPAAREEEEEDDEDSVTPPVE
FT                 EEELEEAVRRSRLKSTAPGLDGIPGRALTLALNTLGPRVRGLFTACLAQAI
FT                 IPQRWKTGRLVLIKKEGRPADSASAYRPIVLLSEIAKLFERVVARRLQHHL
FT                 EGTGPDLSDHQYGFRRGRSTVDAILEVKSYAQDAVARGDGVLAVSLDIANA
FT                 FNSLPWPCIKEALLYHRVPPYLRRVIGAYLSGRSVTFPAPGGGWGEFVVSA
FT                 GVPQGSVLGPILWNIGYDWVLRGGTLRGIKVLCYADDTLVLAQQRTYREAA
FT                 VLATAGVAEVVGRIKRLGLEVSLNKSEAIYFHAPRKGPPADAHIVVGGVKI
FT                 DVARSMKYLGLVLDGRWSFRGHFTSLAPKLLKTAAALARLLPNVDGPSASS
FT                 RRLYTGVVRSMALYGAPVWADALDRHNITLLRRAQRVMAIRAIRGYRTISG
FT                 EVACVLAGVMPWDLDALSLASVYCRRRGLVSGEPASQARAEEAREAAVGMW
FT                 ESRLATPSAGLLTIEAVRPVFRQWLARRHGVLTFRTTQVLTGHGCFGGYLC
FT                 RIAGREPDARCHHCDDCLDETAQHTLEVCTAWASQRRALRDVIGDDLSLPA
FT                 VVKAMAGSETSWDAVSSFCEAVVLEKESAERAREAFAEVAIRRKRPGRRRA
FT                 AHDRRLPP"
XX
SQ   Sequence 4904 BP; 959 A; 1358 C; 1648 G; 875 T; 64 other;
     gcygtgaaca ccttggcgaa caggacggcg tcagaggaag tncatctcct cagagcctcg        60
     aacacgcggc tgcaggcgga attggcggab ttgaggggag agtttgcccg nctaagagcg       120
     gacgtggagc gctcaagacc ggtggagacg ccaaaggcaa cggcgaaggc tctatchgtc       180
     gatgacatag tgcgcactgt gatggtggaa gtgggcacta tggtcagcac aaggctggag       240
     gccttcaagg agcgacthcc tccggaaaag agdttgcggc caccactagc ggccgacaaa       300
     aggaaggagg cgggtcagac acaggcgaga gctgagcchg tcgtgaccac gctgatggcg       360
     ccggcaaacc ctgcgccaaa gggcccgaag ggcaagaaga agaagggtgc ggbaaaggyr       420
     sctcytaarh caaccgcdhc agctgagcct cgaccactdc chccvgctcc aachgacatg       480
     dcbgaggggt ggaatgtcgt ggcgaaaaag ggggccaaga agaaggcvac tcchgvtgcg       540
     aagccgghgg cgcaaavbgy aaaghcaaag hcgcagaagg yrccaaagtt gcgbcgacct       600
     aggtcgcagg tggtggtgct baaggtgcag ccagctgtcg ctgacaagct cacctacacc       660
     gacgtcctaa cccaggtcaa agagaatatc aagctggagg acctgggtat aagcgacctg       720
     aggttccggg tagcatccac tggtgctaga atgctggagt tgcctggbgc caacactggt       780
     gavaaggcgg acgcactggc ngagaagctg cgcggggttc ttcgcccgga agaagtgcag       840
     gtgtcgaggc cagtaaagtg tgcggagttg agggtgabtg gcctcgacga ctctgcaact       900
     tcngaggacg tcatggccgc aatcagccga gttggtggct gtgctgcggc cgacgthaaa       960
     gtcgghgaga tccgacagga ccgggccggt ctaggcacag catgggttcg ctgccctgtc      1020
     ggcgctgcgc agaaggttag cvaaggaagg ctactcgttg gcttcgtctc tgcgagagtv      1080
     aagctgctgc agcctcgcat ccagcgctgc taccgctgcc atgaagttgg ccacatggcg      1140
     gcaaagtgta ggagcgadgt bgaccggagc aatcagtgct tccggtgtgg ccaacccggg      1200
     caccaacagc gtgggtgctc ggctgabgca cactgcccgg tttgcgaggc ggcacagaag      1260
     ccggcdaacc acaaggcggg bagtgccacc tgcgctaaat ccagcgccaa taaaaagggg      1320
     ggaahgvdga agacgtacga ggccggvagc accggctagt acnagtcacc cagccaggga      1380
     aggggaggtg caacacatgg aggatcaata atggccctcc gtgtgttgca ggcgaacata      1440
     aaccactgtg cccgggccca ggacttattg gtccaaagcc tggcgcagtg gtctatccag      1500
     gtggcggttg tttcggagcc ctacagcgtt cccgacagag acaactgggt agccgacaac      1560
     dccggggtgg tgactattat cacccaggtc gcagcgggct ctccgccctt ctcacgagta      1620
     gagaagggtg cgggatgcgt ngctgcactt gtcggcgacc tagttgtcgt aggggtctac      1680
     ttttccccca atcgaactct tgcggagttt gaagagttcc ttatacgatt gggggaaatg      1740
     gtagagcgat ttcgtccggc ggaggtgdtv gtvgcbggcg atttcaacgc gaagtccagc      1800
     gtgtggggct ccgcaacgac ggatgtgcgt ggtgtgacgc tgtcggagtg ggttgttgcc      1860
     accggtttgt ctgtgctcaa ccgagggacc aagaacacgt gtgtgcgaag gctgggcgga      1920
     tccgtcgtgg acgtttcgtt cgcgagcccg gccctagcgb gtcgtgttcg gggctggcga      1980
     gtgctggatg atgtggagac tctctcggat cacctttaca tcttatacga gatctccaca      2040
     cattcagcgg tgcaaccagc ccccwgtcca aactcgcgag agtacggacc gcggtggcaa      2100
     ctgggtcgtc tcgacaggba gttgttggag gaggccgcga tagtggagtc ctggctgccc      2160
     cagagcttgg cgtctgcaga agacgccgca tcctgggcgc agggggcgct gacgcgtatc      2220
     tgtgacgcgt caatgccccg ttccgggcgc cgccctcaac ggcggcaagt gtactggtgg      2280
     tcgtgggaga tcgcgcaact gcgtaacacc tgcgttgcgg cgagacgcca gtacagccac      2340
     tatcgcagac gggtacagaa ggtgcaggag gaggaagacc gactgtaccg cgtctatgtc      2400
     gaggcgagaa cgcagctgca ggaggagatc ggtcgtgtga aaggcgagtc gcacgaccgg      2460
     ttgatcgcgg ggatagacca agacccgtac ggcacacctt accgaatggt gctcggtagg      2520
     ttacgggctt gggcaccacc actgacgcag acactccaac cggacatact ccgaggggtt      2580
     ctgtcgtcgc tattcccgca gcgggccagt tttgcaccac ccagtatggc ccgccctgca      2640
     gcgcgtgagg aggaagagga ggacgacgag gacagcgtca caccaccggt ggaggaggag      2700
     gagctcgaag aagctgtacg ccgatctcgg ctcaagagca ccgccccggg cttggatggc      2760
     attcccggcc gggcgctaac tctggccctc aacaccttag ggcccagagt gcgaggacta      2820
     ttcactgcct gtctggctca agccataatt ccacagcggt ggaagacagg caggttagtc      2880
     ctcatcaaga aggagggtcg cccggcggat tcagcctccg cctacaggcc catcgtgctc      2940
     ttgagcgaga tcgccaagct cttcgagcgt gttgtagcca ggaggctaca acaccatttg      3000
     gaggggacag gtccggacct ctcggaccac cagtatggct tccgcagggg gcgatcgacg      3060
     gtggatgcca tactggaggt aaagtcctat gcgcaggatg cggtggcccg aggcgatgga      3120
     gtcttggcgg tgtctttaga catcgccaac gccttcaact ccctgccatg gccctgcata      3180
     aaggaggcac tgttatacca tcgtgtgcct ccatacctgc gccgcgtcat cggggcttac      3240
     ctgtccggga ggtctgtgac ctttccggct cctggaggag gttgggggga gtttgttgtg      3300
     tcggccggtg ttccacaagg atcggtgctg ggtccgatcc tctggaacat cgggtacgac      3360
     tgggtgctgc ggggcggcac cctgaggggg ataaaggtcc tctgttacgc cgatgacacg      3420
     ctggtcttgg cgcagcagag gacctatcgg gaggcggcgg tcctcgcgac tgctggagtt      3480
     gcggaggtcg tcggccgcat aaagcggctg ggtttggaag tctccctcaa caagtccgag      3540
     gcaatctact tccatgctcc tcgaaagggc ccaccggcag atgcccacat cgtcgtcggt      3600
     ggcgtcaaga ttgacgtcgc ccggagcatg aagtacctcg gacttgttct ggatggtcgg      3660
     tggagttttc ggggccactt tacatctttg gccccgaaac tgttgaagac agcggcggca      3720
     ctggcgcgcc ttttgcccaa tgtggatggg ccgagcgcct ctagccgtcg gctgtacacc      3780
     ggagtggtcc gatcgatggc gctctatggt gctcccgtat gggcggacgc cctggaccgg      3840
     cacaacatca ctctgctgcg acgtgcgcag agggtgatgg ccatccgggc gatacggggg      3900
     taccggacca tctccggtga ggtggcgtgc gtgctggctg gagtcatgcc gtgggatctg      3960
     gatgctcttt ctctggcgtc ggtctattgc cggcgtcggg gcctagtgtc cggggaaccg      4020
     gcaagtcaag cacgcgctga ggaggcgcgg gaagccgcgg ttggaatgtg ggaatctcgg      4080
     ctggcgacac catctgccgg cctgttgacg atcgaggcgg ttcgtccagt tttccgccag      4140
     tggttagcgc ggcgtcacgg cgtcctaacc ttccgcacga cacaggtgct cacggggcat      4200
     ggttgcttcg ggggttacct gtgtcggatc gctgggaggg agcccgacgc tcgctgccac      4260
     cactgcgacg actgcctcga tgagacggcc cagcacacgt tggaggtgtg cacagcctgg      4320
     gcgtctcaac gtcgcgcttt gcgcgacgtc atcggggacg acctttccct gccggccgtg      4380
     gtcaaggcca tggccggcag cgagacgtcg tgggacgcgg tctcatcctt ctgcgaggca      4440
     gtggtgctcg agaaggagtc ggcggaacgg gcgagggagg cttttgccga agtcgccatc      4500
     cgccgtaaga gaccgggtcg ccggagggcg gcacacgacc gccgccttcc gccctaatgt      4560
     gccagagggc ggtcagcttg gggaagctgg ccgcctacca acctggcccg agtaggcgcg      4620
     cgcaggttgc tcccgcgcgc tactccgagc aggccgtcga gggtgcccac acacccttga      4680
     ctccgcgacg tgcctagcag gctcccgccg ccgcgtttcg tggacgattc tagtccccgc      4740
     gtctcgcggc cagtggcggt cgaggaggag caccgtgagg ttttagtggg tatgcggacg      4800
     gcctacatct gccaagtccg cgagtcccac ataacccgct cgagtcccca ctcgggccgg      4860
     tatccgtaaa aggatttcct cacgttaaaa aaaaaaaaaa aaaa                       4904
//
ID   R1-2_LMi    repbase;    DNA;    INV; 6394 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 19.11, Created)
DT   03-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-6394
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3186-3186 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3260..4237,4224..4940)
FT                 /product="R1-2_LMi_2p"
FT                 /translation="EVARAIGELRKKEAPGPDGIYAEVLQQIAPQITPFLT
FT                 ETLNEALQLGKVPASWKTASAIVMKKSKDKDPTDPKSYRPICLINTLAKVQ
FT                 ERLLCNRLQAHRELMGLNPHQYGFRKHKSIDDAINKALNLVYQTENKYVIS
FT                 IMIDISGAFDNLWWPALFARLRQLQVPAALYHSLRDYCTGRVVEWCAGDRK
FT                 VIKRITKGCPQGSICGPIFWDITIEPLLELVDANENVDGIVAYADDLLVVV
FT                 SANSRLKLEERANNILHEMASWCAQTKMSIAPQKTSYILLKGGLMRNPSIK
FT                 LGTMNIARKKSTRYLGIIIDEKLSFKEHIEKNSRKKTADKAEKILQKIARI
FT                 NTTEYRLPLTYMRIYHCAIFESVISFAASPWAHKLRLISNRIIVRRRQRGV
FT                 LLRLSGAFGTVSLEALCVVMGIYPIDITIRYRAARYWLKKGDKDKVTEITG
FT                 EEIXDGHHLNTWRISTWQKEWDEIDKGRRVYDFFPSIRERLSLKFINPSRG
FT                 MIHFITGHGPYPVHLHRMNLRPSQICRCGDVGTPEHTVINCTVLSQVGTWK
FT                 WITTTSTIPLEIRMRGMN"
FT   CDS           join(665..832,855..1061,1120..1326,1232..1972)
FT                 /product="R1-2_LMi_1p"
FT                 /translation="MSTKERSSSINSPRIQSPSVMEDTQFMSASDKIAIID
FT                 NIITKVTSELKGKHQAGKNVVSNHLLSVKSRRTNNCFGERKRKIETTVDVL
FT                 NGLNAPRHAKTQEILKQSRLEGQIDILKDEKRDCEMNKNLKKRNDRLRTTE
FT                 IRPIAPSYASIVSGNKAETQIKVDQIKEKQATTLVLPIHHKPGHQSSKGYD
FT                 NEKYIRSKKSRQQLLFYRSTTNLDTKVVRDMITKNINPRQDKVKIKSIRTT
FT                 PSVVIIETEAQDDCKKLMDKASKLQDIICEGPRKRRPLLAIHSVPSCLSDD
FT                 DFLGELYDLNLSEHLTQDDFYDEVKLRFKTGPKGKDRQNVIVEVSPRVRNL
FT                 LLRQERIYISFHALKAEDYTNIPKCFNCCDLGHPTKFCSVNQPVCMKCGQK
FT                 GHKKKDCQEQETKIGCIPCKLRNRTCDKAGGPDCPTHKLLHAHKSED"
XX
SQ   Sequence 6394 BP; 2248 A; 1152 C; 1277 G; 1707 T; 10 other;
     ccggaggaag ctcgctgcag awgtgwtccm catattctgt gatttttagt ggtttttcck        60
     tawgtgattg tgatgwaagt gcactcaggc actgctgaca taaggtactg tacattgaat       120
     aactaaaaat aaaaatccat tggattttcg tgtgatataa gtgcctattt aaaatgtagc       180
     tctgaagtgg ggttaggatt gacttcatta cgaattttcg tgttttagca cgatcaaaca       240
     ctgctacgtt tgatacaatt aagtcgtcct atgactctga taccttttga agtgtttatt       300
     gttaacatta tttaaataat cgaatcagaa cagtatttat tatgactctc gttcagtgtt       360
     taccaatttt ggcgggaaat agcgccctgt gataggcagt tttatcctga cgtcacaggg       420
     gcggggctcg ctgttattgg gtacattgct gacagttgct tctcactgtg acgatattga       480
     cgtcagaaca acagctgact ctcattggtg cctgtgtaaa cgacgtcagt aggacggcaa       540
     acccaattga agaacttagc gggaatttta aaggcagcgt ttttacaatt atatcagaga       600
     agtggcggca acgagaagga cgcgagaaag atgtaacagt agcgcttctt cacctctaat       660
     cgccatgagt acaaaggaaa gatcatcatc cataaattct ccaagaattc agtccccctc       720
     agtaatggaa gacacccaat ttatgtctgc atctgataaa atcgctatta ttgacaatat       780
     aattacgaag gtaacctctg aacttaaggg gaaacatcaa gcagggaaga attagtcaat       840
     attataaaaa atgagttgtt tccaatcacc ttttatcagt caaatctcga aggacaaata       900
     actgttttgg agaaagaaaa cgtaagattg aaacaacagt agatgtctta aatggactaa       960
     atgcccctag acatgccaaa acacaagaaa tactaaaaca atcgcgactg gaggggcaaa      1020
     tagatatttt aaaagacgaa aagagggact gcgaaatgaa ctagctatct caatgcacca      1080
     atgccaaata tagaattgag aagctacaaa aagagataga aaaatttaaa aaagcggaac      1140
     gataggctcc gaacaacaga aatccgtccg attgctccat cttatgcatc aatagtgagt      1200
     ggaaacaagg cggaaacaca aattaaagta gatcagatca aagaaaagca ggcaacaact      1260
     cttgttttac cgatccacca caaacctgga caccaaagta gtaagggata tgataacgaa      1320
     aaatattaat ccaagacaag acaaagtcaa aataaagtct ataagaacaa cacccagtgt      1380
     agtcataatt gaaaccgaag cacaagacga ttgcaagaaa ctgatggaca aagcctccaa      1440
     attacaggac ataatctgtg aaggtcctag aaaaagaaga cctctactgg ccattcattc      1500
     agtaccctca tgcttgtctg atgatgactt cctcggggag ttatatgact taaatttgag      1560
     tgaacacttg acccaggatg atttttatga cgaagtgaaa ctccgtttta aaacaggacc      1620
     aaaaggaaaa gacagacaaa atgtcattgt tgaagtcagt ccacgagttc gaaacctgct      1680
     gttgagacaa gaaagaatat atataagttt tcatgcacta aaagcagagg attacacaaa      1740
     tatacccaaa tgttttaact gttgtgatct cggtcaccca acaaaatttt gttcagtaaa      1800
     tcaaccagta tgtatgaagt gtggacaaaa aggccataag aaaaaggatt gccaggagca      1860
     agagacgaaa attggctgta ttccgtgtaa gttgagaaat cgcacatgtg ataaagcagg      1920
     aggccctgac tgcccaacgc ataagctgct acacgcccac aaatcagaag attgattttg      1980
     gaacagacgt ttaaaagaat gaaaattatg cagttaaatg ccgacagggc attactgtca      2040
     gtgcgaactt gttaaagttg cgttggaacg tgaggggata taatttgctt acaggatcat      2100
     acttagaggc ggagacaatt aatcttcctc caggacagta gtgtgacggc gaccaagttg      2160
     gcagcagtca tagtattaaa taagacagta actgcactaa aataagtcaa ttcagctcca      2220
     agcatatagt aaccatagag gtaacatctg acataaaaat gggtaattgt ctcgatgtac      2280
     gcgcagtatt ctatgacatc cgcccatatg tccaatwtat ctckaatgta gcccaatata      2340
     caagactaaa agtctaataa tatgtgctga cataaatgcc agatctgtgc tgtggcattc      2400
     aggaacacaa atgatagagg taggattgtc agtgatgcca tctatgctaa ccgtcttcat      2460
     gttctaaata gggaaggacg ccacacctac cgaactaata ctggtcagca tagcaatata      2520
     gatataacat tggcaaatag taatgcgctg ccagtatcac ggactggaca tttatgaggg      2580
     gcataccgaa agctttcaca atgttataat tatcaaaaaa taccttaaat ggtgaaaacg      2640
     acaccaataa aggcagatca tattggagaa gcaaattggg aacatatgag acaaatacta      2700
     cgagactata aatttcggag cttacaggaa gtgtcgatta ccaaggtaca taattgacag      2760
     tgacaggatg cacaactgag cagtaccatt caccaagcag ccaataaaac gaagatctaa      2820
     aattccatgg actcaagaac taaccagatt acggaaaaga acccgggaaa ctagaaagca      2880
     ttaccaaaag gcaaataatg cgagagaaag agaaatgcgg caactaatat acaggcaggc      2940
     taaggaacaa tacagaaatt aattaattaa aacaaagaag caacactggg acaattttgt      3000
     acaagaccag cttcaagata atctgtgggg aaccccatat aaaatcctaa cggaaaaaat      3060
     caaaacacca ctggtttgtc aacattgaaa caagacaatg ggtcgttaac aaacggttgg      3120
     aggaatactg ctgagtacct tctacacaaa cttttaccag acgataatat gatgactgac      3180
     gaagaaatac atattgacaa acgagccgaa ctagaactag tactctactg agacggtaat      3240
     atgtccattt gctcagtaag aggttgcacg ggccataggt gaacttagga aaaaggaagc      3300
     ccctgggcca gatggtatat atgctgaagt gctacaacag attgctccgc agataactcc      3360
     ctttttaacg gagacgttaa atgaagctct acagctaggg aaagtcccag ccagctggaa      3420
     gaccgctagt gcaatagtaa tgaaaaaatc gaaggacaaa gatcccaccg accctaaatc      3480
     atatcgccct atatgtttaa taaatacgct ggcaaaagtc caagaacggt tactatgcaa      3540
     taggcttcag gcacatcgtg aacttatggg gctgaatcca catcagtacg gctttcgcaa      3600
     gcataaatca attgatgatg ccatcaataa ggcccttaat ttggtgtacc agacagaaaa      3660
     caagtacgtg atatctatca tgatcgatat ctcaggtgca ttcgataatt tgtggtggcc      3720
     ggccttgttt gcacgcttga gacaattaca ggtgccagca gctttatatc atagcttacg      3780
     agactactgt acaggtagag ttgtcgagtg gtgcgcggga gaccgaaaag taattaaacg      3840
     aattaccaaa ggatgcccac aaggctccat ttgtggtccc atcttttggg atatcacaat      3900
     tgaacccttg cttgaattag tagatgccaa cgagaatgtc gacggaattg tggcctatgc      3960
     cgatgatttg ctggtggtag tgtcagctaa ctcaaggtta aaactagaag aaagggcaaa      4020
     caacatacta cacgagatgg ccagttggtg tgcccaaacc aaaatgtcga tcgcaccaca      4080
     gaaaacatca tacatcttac tcaaaggcgg gcttatgaga aacccatcaa taaagttagg      4140
     aaccatgaat atagccagga agaagtcaac tagatatctc ggaataataa ttgatgaaaa      4200
     actttctttt aaagaacata tagaaaaaaa cagcagataa ggctgaaaag atattacaaa      4260
     agatagccag aataaacacc actgaataca gattgccact aacatatatg aggatctatc      4320
     actgtgccat atttgaatca gtcatatcct ttgcagctag tccatgggcg cataaactgc      4380
     gattgatttc gaacaggatt atcgtgagac gcagacagag aggagtactc ttacggttat      4440
     caggtgcttt tggcactgta tccctggaag ccctatgtgt ggtcatgggt atatacccaa      4500
     tagatataac tatcagatat cgagctgcaa gatactggct gaagaaaggg gacaaggata      4560
     aggtaactga gataactggg gaagaaatts tggatggaca ccatctaaat acttggcgta      4620
     tcagtacctg gcaaaaagag tgggatgaga tcgacaaggg acgtagggta tacgactttt      4680
     ttcccagtat aagagaaaga ttatctctga agtttattaa tcctagccga gggatgatac      4740
     acttcataac tggacatgga ccatacccag tacacctaca tagaatgaac ctacggccaa      4800
     gtcaaatatg tcggtgtggt gatgtaggaa ccccggaaca cacagtaata aattgcacag      4860
     tgctctcaca agtaggcacc tggaaatgga tcacaacaac atctacaatt ccattagaaa      4920
     tcaggatgcg tggaatgaac taaatgaaac cgcagacaag atatcaagga aacttcaaga      4980
     agaatatgcc ataaaagacc cagagacgaa ttaatagacc gcaggtgcat acaaattata      5040
     acagcagtga tgaagaaacc ggtagttcta cagattgtga tacagatact gaaggagaca      5100
     caagtatggg ctttggaatg gaggaaatgt aactaaattg tgaatcctct tgtacccaaa      5160
     ctctatgccc tagcagcatc actttgttgt tgttcttgtt taattaaaac tatttttata      5220
     cacacctggt aatttctaat tatgtaataa cgtaatagtt gatgcgtgaa agagttgttt      5280
     cctgcactca tactccttgt cctaataatg taatttctga ttttctatga gttatgttgg      5340
     tactatactt ctcagatcca aaatattatg agaaatgtca tcctgtatat ctaaaacata      5400
     acatatgaat tacgattttg actaaaacca tgtgaacttt gtatttccaa actaatatat      5460
     attaatctac ggtaattaat tgttaaaatt tgctactgtt acaaataagt tctttactat      5520
     atcttttatg tgcttaggaa ctaagacatt taactgttac tagtaggttg tttagaagaa      5580
     ataaataaat aatttcataa cagttaaatt gaacatttat aaacttactg ttgattttag      5640
     tttaattgat attactattt tacacatttt gtatttctaa tgtattttaa tttacttcat      5700
     tgtaagaaat tataattaaa ctggtattat attgtatctc tacatataag tcagctacat      5760
     ggaatatatt ttaaatcaga atcgtaattt tccatgattc cagcaaacaa tgtatctgac      5820
     tgtttcctgt tataacgaag agtaccttta tgtttgtgta gctaaatatt taattatact      5880
     ttttacatga ctaagtatat tttgtttgtt atttatttac aagaaagata catggaatat      5940
     aaagaaaaaa aattcaaatc agaattgtag ctttttatgt tttcagcaaa gcaatgtatc      6000
     tgtttttctt ataatgaaga gtacctttat gttagtgtag gcaaatgtta aattatactt      6060
     cttatattat taggtacatt ttgtatgtaa tgaattttat ataattaact atgctattgc      6120
     atttcaatga ttctttatat aattgtaaac atatgtattt ctttattatt gtaattaatt      6180
     taataaaagt atatagtagc tgctgagtaa atactgcaga cttctcacaa cacagttcca      6240
     cctccacggg gtgggacacg ggcaacggca cactggtcct ctataccawa tatgtctaga      6300
     cgaccggtgt ggcggctaag agaccgttgt ggaagaccga cccgctatat tacacaggca      6360
     gcgggtccat aatcgcaggc agcagtgaaa aaaa                                  6394
//
ID   R1-2_PBa    repbase;    DNA;    INV; 5457 BP.
XX
AC   .
XX
DT   14-MAY-2012 (Rel. 19.03, Created)
DT   14-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5457
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 754-754 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1131..3116
FT                 /product="R1-2_PBa_1p"
FT                 /translation="MXSFKNFKDVVRRSARLASRFRPGRDVTMEARDVSGV
FT                 GSRVRSVARSVTASSSLGAPRRAVSGCVRGPVRDEAQSTGCDLRVVRIMLD
FT                 RCDGVLARGSLPVVFNQEGQGAIRNKKDSSACRDNRNAIGSANDLDSALNX
FT                 TEKSANTPQLQSQFVSRLGSRSPVRRTADASKSSIVSTGVRILQLNMRRST
FT                 VVTGEVRQLVAEKRLDVLLLQEPHVRKQGAGHTFVGLGVGMRVAAVRSQRP
FT                 WAAVAVCNPQFQLLFVSQLSTTHCVCAEVQAPGFSLYVVSCYFQYSDDIET
FT                 HLRHLEMVFHSLRGERLLVAVDANARSSLWGPQQTDDRGARFEDLIRASGM
FT                 SVVNDAGQGPTFWTARGASYIDVTLASPSMSQFIGEWKVRQEWTTSDHSAV
FT                 DIRLRVPKGSGEDRGIASARFDTRRADWERFSESLTDLSRSKLEALELCSA
FT                 ERIEVMAERMATVLTEACSASMPRKRQFRKSNPWWTRELTVLKKSAYRKRR
FT                 AFQMERDEPTRLVLRLEYRSSLREYSREVRRAKLASWREFVTSNGNSEPWG
FT                 FVYRHQASKLRVESVLSALRCGDGSTKTLEETAGCLLDVHVPEDRESDDTP
FT                 EQRGIRSSSRVSPATADTPFFTVAEMAAAVRTFKNNKAPGPDRIEVAVLRA
FT                 ACRVIPGQFLRLL"
FT   CDS           3286..4851
FT                 /product="R1-2_PBa_2p"
FT                 /translation="MGTSLAPGGVSDRQFGFMPGRSAEGAVVELRRMATAS
FT                 GGRYAVALLFDISGAFDNVWWPLVLDSLKKRDCPRNVYSVLQSYFENRVVG
FT                 IRLGSVEVSRRAARGCPQGSVLGPICWNLMFDGLLRLLEDAGXKFVAYADD
FT                 LAVVVSGNSRREIEIEGQRAVDRIEDWCRVAKLQLSDRKTEALVLRSEGIA
FT                 RNPIGRRGGARPDRKRKTNGKKAVDFGDRPPIIKIRGKSIKFKTSVRYLGV
FT                 HFDRCLKVRSHCEYLNGKVGLLFQRLGRLARAHWGLKFRALSTIYRGVFAP
FT                 TVAYAAAGWADLCTVGDLKLLRALQRRVLISVTDAYRTASWESVVAGAAPI
FT                 DIVLREYAARYQVRVGRDARIGNLEIPSGADRCVALKQIREEAIELWQARW
FT                 VLSNKGRTTFAFFKDVRDRLAMCSSLEANHYTTQAXTGHGNFRARLNALGL
FT                 ASDDACPCGSPDTVQHFLLHCPLFEAQRVALRELVPQGGWRWPDAAQFFVS
FT                 SPEALAAFAGYCAESLWLKGFEDSHV"
XX
SQ   Sequence 5457 BP; 1037 A; 1450 C; 1735 G; 1229 T; 6 other;
     acataaccaa atgcctcgtc atctaactag tgacgcgcat gaatggatta acgagattcc        60
     cactgtccct gtctactggc ggtgttggag tgatgacgcg aatatacagc ctctctcact       120
     ccgtgtcaca gactgcaacc tcctcgatgg gtgccgctgg ataccccgta atgggggaac       180
     caatcagcag tagtgacatc ccctccccct tcccattccc ttccatagcg ttgtccggtg       240
     gttgcggtga cgaccctgta cgcggctcga gtggtggaag ccatgctgac agtctgcgag       300
     gggtcggagc ggacggccgg tgcgcgcttc tcctcccttc ctttcgtcca cgagcctcct       360
     attaacacag catagccatg agtttgttcc atgaacaagt gactcctatg tggcaagcac       420
     aacgcatgtg ctggtgggct ggtcccgtga ctttggaacg cgtggcktgt ctcctcggat       480
     gggtggagcg acgccgtctt ttcgccctgg tctggtgcgt gctcccctcc ccaatatccc       540
     tctacttggg ttgaggggct ccgccatttc gtggtgactt tgacgcgtga gattcgccct       600
     cccggatgag ttgagaggcc ccgccatttc atgggtcggc ctcttctcgt tcccttcccc       660
     aatactcctt ctcacgttcc ttcaccatct ccattctcta cattcccccc tcatcctcgc       720
     attccccatc atcctgtggt agcctctcct ttcccattcc gccctccgcc ctgcctttcg       780
     gggggggtgg atggcggggg ctgcctctgg agacttccgg gcccgacatc cctgctgcgg       840
     cgggggtggc ggaaccggag tctactaatc taattttaat tctatttcag gtaaacttcg       900
     ttgggcagtt tgctccaatc gggtaggcgt ttccctcgaa tggcgctcgt ctaaaggcta       960
     aggtgttagg taccgtgctg agagtctgaa tggttgcgag ggcgttaatt tcgcgaccgc      1020
     taacggtccg ctccgaggta cctgccgtcc cctcggtgta attaggcttg gtggcgtaaa      1080
     ggtggctcta cgtcgctcga catcccttcc accgtactcg tgggaacaat atggkttcgt      1140
     ttaaaaattt taaagacgtg gtgaggagga gtgcccgcct ggcctcacgc ttccggccag      1200
     gacgggacgt aaccatggaa gcacgggacg tgtctggcgt cgggtcgcgg gtccgctcgg      1260
     tcgcgcgctc ggtgacggcg tcctcttcct tgggagcgcc tcgccgagct gtgtccgggt      1320
     gcgtgcgcgg tccagtacgt gacgaggcac agtccacagg ttgcgacctt cgtgtcgtcc      1380
     gtataatgtt ggataggtgt gacggagtcc tcgcgagggg gtccctgcct gtggtcttca      1440
     accaggaggg acaaggggcg attaggaata agaaagatag ctccgcgtgt agggataata      1500
     gaaacgcgat cggatccgcg aacgacctag attccgcatt gaackcgacg gaaaagtctg      1560
     caaatacccc ccagctccag tcccagtttg tatcgaggtt aggttctcgg tcgccggtga      1620
     ggcggacggc cgacgcttcg aaatcttcga tagtgtccac gggagttagg atactgcagt      1680
     tgaacatgcg gcgttcgact gtggttacgg gagaggtgcg tcagctcgtc gcggagaagc      1740
     gacttgacgt cctgttattg caggaacccc acgtcaggaa gcagggcgcg ggccacacct      1800
     tcgtagggct aggtgtcggg atgagggtgg ctgccgtacg ctcgcaacgt ccgtgggctg      1860
     cggtggcggt ctgtaaccct caattccaat tattgtttgt ctcgcagctt agcacgacgc      1920
     actgtgtgtg tgcggaagtg caggcccctg ggttctcgct atacgtcgtg tcgtgctact      1980
     tccagtacag cgacgatatc gagactcacc tcaggcacct cgagatggtg tttcattcgc      2040
     tgagggggga gagactgtta gttgccgtag atgccaatgc ccggtcgtca ctctggggtc      2100
     cccagcagac cgacgacaga ggtgccagat ttgaggacct cattcgggca tctggcatga      2160
     gcgttgtgaa tgacgctggg cagggtccca ccttctggac ggcaaggggc gcatcataca      2220
     tcgacgtgac cctggcgtcg ccctccatga gccaattcat cggcgaatgg aaagtaaggc      2280
     aggagtggac gaccagcgat cacagcgccg tggacataag gctgagagtg ccaaaggggt      2340
     cgggcgaaga ccgggggatc gcgagcgcga ggttcgacac tcgtcgtgct gattgggagc      2400
     gattctccga gagcctgacc gatctttcac gatcaaaact ggaggccctc gaattgtgtt      2460
     ccgcggagcg tatcgaggtg atggcggaga ggatggcgac ggttctcacc gaagcctgct      2520
     ccgcgtcgat gccgagaaaa aggcaattta gaaagtccaa cccgtggtgg acgagagagc      2580
     tgactgtgct caaaaagagc gcgtatagga agaggcgtgc ctttcagatg gagcgggacg      2640
     agcccactcg cctcgttcta aggctggagt accgctcatc tttgcgggag tacagccgag      2700
     aggtgaggag ggcgaagctc gcaagctggc gggagttcgt cacatcgaac gggaattcgg      2760
     agccttgggg cttcgtttat aggcaccaag cgagcaaact ccgggtggag agtgtgttga      2820
     gcgcactccg gtgtggcgat ggctccacga agaccttgga ggaaaccgcc ggctgcctcc      2880
     tggacgtgca cgtcccagaa gaccgggaaa gcgatgacac gccagaacag cgtggaatta      2940
     gatcttcgtc tagggtgtct cccgctacag ccgatacacc tttcttcacg gtggcggaaa      3000
     tggctgcggc ggtgagaaca tttaaaaata ataaggcccc ggggccagat cggatagagg      3060
     tcgctgtgtt gagggcggcc tgcagggtga tccccggtca gttcctcagg ttgttataat      3120
     gggtgccttc gatggggcgt cttcccctcg gtctggaagg cgggctcgct tcgggtcctt      3180
     ctgaaggagg aggggaggga cgagagggac ccaaagtcct acagacccat ctgtctcctc      3240
     tccgtcgtag ggaaactgtt tgagaaactt ctcaagtctc gcctcatggg cacgtcattg      3300
     gcgccgggtg gggtctccga tcggcagttc gggttcatgc ccggaaggtc ggcggagggc      3360
     gctgttgtcg agttgcggcg tatggccact gcctccgggg ggaggtacgc cgtcgccctt      3420
     ctcttcgaca tctccggggc ctttgacaat gtctggtggc ccctcgtktt agatagtcta      3480
     aagaagcgcg actgcccgcg aaacgtttac agcgtcctcc aaagctattt cgaaaatcgt      3540
     gtagtcggga ttcggctcgg ctcggtggag gtgtccaggc gggcggcgag gggatgcccg      3600
     cagggatccg tgcttggtcc gatctgctgg aacctcatgt tcgatggtct tttgcggttg      3660
     ttggaggacg cgggatktaa attcgttgcg tacgctgacg atctcgcagt ggtcgttagc      3720
     ggaaactcgc gccgggaaat tgaaatagag ggtcaacgtg cggtagaccg gattgaggac      3780
     tggtgtaggg tcgcgaagct tcagctctcc gatcgtaaga ctgaagctct ggttctcaga      3840
     tcggaaggaa tagcgcgaaa tccaatagga agacggggag gagcgcggcc ggaccgaaaa      3900
     cgaaaaacga acgggaagaa agccgtcgac ttcggagata ggccgccgat aataaaaatt      3960
     cgcgggaaga gtatcaaatt taagacgtcg gttaggtatc ttggcgtgca ttttgatagg      4020
     tgccttaaag ttagatcgca ctgcgaatat ctaaatggca aagtcggttt gctgtttcaa      4080
     aggttaggta ggttagctag agcgcactgg ggactgaagt tccgagcgct ctccacaatc      4140
     tacaggggcg tgttcgcacc gacggtggct tatgctgccg cggggtgggc tgacctctgt      4200
     accgtaggtg acctgaagct tctgagggcc ctgcagcgcc gtgtcttaat ttcagtgacc      4260
     gacgcatacc gcacggcctc gtgggagtct gtcgttgctg gggcggcacc gattgacatc      4320
     gtactccggg agtacgccgc gcgctatcag gtcagggtag ggagagacgc caggataggg      4380
     aatttagaaa taccgtcggg tgcggatagg tgcgtagcgt tgaaacaaat aagggaagag      4440
     gcgattgagt tgtggcaggc cagatgggtt ttgtcaaata aaggccgtac caccttcgcc      4500
     ttctttaagg atgtgcgtga tagattggcc atgtgttctt ctttggaagc caatcactat      4560
     accacgcagg ccttwacagg ccacggaaac ttccgcgcgc gattaaacgc actcggtctt      4620
     gcgagtgacg acgcgtgccc gtgtggtagt ccggatacag tgcagcattt cctactgcac      4680
     tgtccgttgt tcgaggcgca gagggtggca ctgcgcgagc tggttccgca gggcggatgg      4740
     cgatggccgg atgccgcgca gttctttgtg tcgagtccgg aggcacttgc ggcgttcgct      4800
     gggtattgcg ccgagtccct gtggttgaag ggattcgagg attcccatgt ctaattggtc      4860
     gaagcgatgt tcttcatagg gcgtgaaacc gggggatgtc ggagcctccg gtgatgggag      4920
     ggtggtcccg taaccttctc ggggtcgcca cctcttcccc cacgctccgt gcgtttagga      4980
     gaatgcgttg gttgggtcta tcctgtgttc cgtggcgcgg cgccactcct cgatccaaaa      5040
     tatcctaacc tctccacatc ctcttccttt cctacatcct cttcctttcc tacttaacag      5100
     ggtcagagcg tggtgccagg tcgggtgcca gatgggtggg cctcccccgt ggtccccgtg      5160
     ggcgcgacaa gcatcgatgg gggcgctgcg ctaccggacg cccgagtgcg cccggacgat      5220
     ggtgcggcca aggcccccct cggaggttgg aggggtgtga ggaggcgatg cgggtcgcgg      5280
     ccaaaccacc cattcccact agacgaccaa gtgggcgctg ctgggttttt ccatcgcccg      5340
     tctcggggcg gtttcgctgg atggtcgtac tgttgttgcg tatgcccgta tgggcgaggt      5400
     cgcaggggtg cgtttccttc gggaggcgtg ctcaaacaat aactgtccct atctact         5457
//
ID   R1-2_PPo    repbase;    DNA;    INV; 2209 BP.
XX
AC   .
XX
DT   10-SEP-2015 (Rel. 20.09, Created)
DT   10-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2209
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3133-3133 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2052
FT                 /product="R1-2_PPo_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="IMGKILEKMLVRRVQWHTAPSISRHQYGFMPQRSTED
FT                 SLYDMVQYIRAEVKRRKLVVLISLDIEGAFDNAWWPAIKCRLAETRCPVNL
FT                 RRLFDHYLSDRKVHVRYAGAEWTREPTKGCVQGSVGGPTLWNLLLNPLLVE
FT                 LEEMGVRCQAFADDVVLIFSGEGATDIQGVANGALEHVRKWGVKNKLNFAP
FT                 NKTSAMVITRKIKYDTPRLSMGGRPIELTNKMKILGLTVDNKLSFKAHIET
FT                 VCKKAQSLYRQLSTAAKVSWGLNPEVIRTIYVAVAEPIIMYAASVWAPAVG
FT                 KKSIQNLLRQVQRGFAQKIAKTYRTASLHSALTLAGLLPLDLRVQEAALLY
FT                 EVKKGHTHQVLGDLVLERPVKFEKSAHPALRQGLQFDCLADGDEVAQRAAA
FT                 DVNIYTDGSKIDGKVGAALSVWNSAAEITCRKLKLGNFCTVYQAELLALSE
FT                 AVKYVVKSNERRFSLYSDSRSALETLKGGISLHPLAERIRKDVRKLERQGK
FT                 SVRMFWVKAHAGLEGNERADQLAKQAAVEVDVGMMYERCPVSFVKRQIRLD
FT                 TLDKWNRRYVEGVTASTTKLFLPDATSAYPTLRKMEMDPVLAQVLTGHGGF
FT                 SAYLNRFRCKEDPSCRCDPAREETVLHILVECPVFAARRTETETKINIRIN
FT                 RDNLNSLLRNEDTREGFIKFCKYVAQKVIFRNKTR"
XX
SQ   Sequence 2209 BP; 624 A; 494 C; 634 G; 457 T; 0 other;
     attatgggca aaattttaga aaaaatgctg gtgcggcggg tccaatggca cactgcacct        60
     tcgatcagcc ggcaccaata tggttttatg ccgcagcgta gtaccgaaga ctccctctat       120
     gacatggttc agtacatacg ggccgaagtc aaaagacgga agctcgttgt gttgatatca       180
     cttgacatag agggagcctt cgataacgcc tggtggccgg cgatcaagtg caggctagcc       240
     gaaactcggt gtcccgttaa cctgcggcgc cttttcgatc actatttgag tgatcggaag       300
     gtgcacgtta ggtacgcggg cgccgagtgg acccgagagc cgaccaaggg gtgcgtgcag       360
     ggatccgttg ggggtcctac gctctggaac ctgctgctga atccgctcct ggtggaactg       420
     gaggagatgg gcgtccgctg ccaggcgttt gcggacgatg tggtcctgat cttctcgggc       480
     gaaggtgcca cggacataca aggtgtagct aatggggctc tcgaacatgt tcggaagtgg       540
     ggtgtcaaga acaaactaaa tttcgcgcct aacaagacct cggctatggt cattaccaga       600
     aaaataaaat atgacacccc gcgtctgagc atgggcggga ggcccattga gctcaccaac       660
     aagatgaaga tcctggggtt gacagttgac aataagctca gtttcaaagc gcatattgaa       720
     acagtttgta aaaaagcgca gagcctctat cgtcaactgt caaccgcagc aaaggtctcg       780
     tggggcctga accccgaggt gatcaggacc atatacgtcg cggtggcgga acccatcatt       840
     atgtacgcgg ctagcgtgtg ggcgccagcg gtggggaaga agagcatcca gaatcttttg       900
     aggcaggtgc agcgcgggtt tgcgcagaag atcgcgaaaa cttacaggac cgcctctctg       960
     cactcggccc taacacttgc tgggttgctt cctctggacc tacgggtcca agaagcggcc      1020
     cttctttacg aagtaaagaa gggtcatacc caccaggtgt taggagacct tgtgctagag      1080
     aggccggtaa aattcgaaaa gtctgcgcac cccgcgctgc gacagggcct gcagttcgac      1140
     tgcctggccg acggtgacga agttgcccag cgagctgccg ccgatgtgaa tatttacacc      1200
     gacggcagca aaattgacgg caaagtcggc gcggcgctat cagtatggaa tagcgccgcg      1260
     gagatcactt gccggaaatt aaaactgggg aacttctgca ccgtatacca ggcggaactg      1320
     ctggccctga gtgaggccgt gaagtatgta gtgaaaagta atgaaaggag gtttagtctt      1380
     tactccgact caagatccgc tctcgaaacc ctaaaaggag gcatttccct ccatcccctc      1440
     gctgaaagga taagaaagga tgtaaggaaa ttggagcgac agggaaagag tgtaagaatg      1500
     ttttgggtga aagcacacgc ggggctggag ggaaacgaga gagcggatca gctggcaaaa      1560
     caggccgcag tcgaggtaga tgtcgggatg atgtatgaaa ggtgtcctgt ttcatttgtc      1620
     aagcgacaga ttcgactgga cacgcttgac aaatggaaca ggcgatatgt ggaaggggtc      1680
     acggcctcaa caacaaagct cttcctccca gacgcaacga gcgcctaccc cacactaagg      1740
     aagatggaga tggaccctgt gctggcgcaa gtcttgacgg ggcatggggg gttctcagct      1800
     tacctgaatc ggttccgatg caaggaggac ccctcgtgcc gctgcgaccc ggcaagggag      1860
     gaaaccgtgc tgcatatcct ggttgaatgt ccggtcttcg ccgcaagaag aactgaaaca      1920
     gaaacaaaaa taaatatcag aataaataga gataatttaa atagcttact aaggaatgaa      1980
     gacacgagag aagggtttat aaaattttgt aaatatgtag cgcaaaaagt gatatttaga      2040
     aataagacaa gatagaaata ggaaatttgt aaaaattgta caatattgta aatttcgttt      2100
     aagttttaac aaatatatta agttgaaaaa aaggaaagta agcaacgtcc ctgatccaaa      2160
     tgttaggggt atgagagggc ggcgcagagc cgccataaaa aaaaaaaaa                  2209
//
ID   R1-2_SIn    repbase;    DNA;    INV; 3513 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3513
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 474-474 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           372..3236
FT                 /product="R1-2_SIn_1p"
FT                 /translation="MMSRACDASMPRSRPMARRAAYWWSAELAELRRATVA
FT                 ARRAHTRAKRRGMEDALNNAAAVLREARKALRTAIARAKAAAWDELLSELD
FT                 RDPWGRPYKIVMKRLRPWAPPVSETLDPQFLGEVVDKLFPTRGRDIPEKTG
FT                 PPPGWTEELEVSRHEMVAAFARITGRKAKAPGPDGIHAKVWARASSIIGEA
FT                 LRGPYTKCLREGTFPRRWKRARLVLLKKEGKPAESPSAYRPLCMLDDAGKI
FT                 FERIIANRIIRHMSRNGPDLSPGQYGFREARSTVDAIRQVRSLSESITGDG
FT                 KVALAISLDIANAFNSIPWGEVVAALSEHFRLPPYLVAIVRDYFRDRVLEF
FT                 RDKTGLQQRRDMSCGVPQGSVLGPLLWNATYDKVLRGALPPGCHVVGYADD
FT                 TFVVAGGASWVIAIAMGNWAVNCVVGSIKSLGLRVAPEKTEAIFFHDGSSR
FT                 VPPRAFVRVDNTRVRVGATLKYLGLLLDGRWAFVEHFDKLAQRLGRRTDAL
FT                 LGLMPNLRGPRVGARRAYAYAAMAGALYGAPVWFREALASRRIRDVLHAVQ
FT                 RRLARRIVRAYRTAPSAATMVLAGLPPAEFTADALAWSYARAKAVRLQGGV
FT                 VTPRVAALLRERARRRAMRAWRESLANDPPAAGSRILEAVLPHLDEWVGRP
FT                 WGGLSYRTTQVLTGHGCFGEYLCRIRKEPTTQCHHCEADRDSAQHTLEDCP
FT                 AWEELRGVLREEIGDDLSLRAIISQMVSRERAWVAVSSFCEQVMRQKEEAE
FT                 TVRERRPGGRMPPGEGNDGRGGGDGGHDPPWLPPRPPRRRRPAPRPPGPAA
FT                 RLXKGGGGPADQPRSPPPSPQLRRRGATAPIWRGGGDPPPLRLPAPPSGHA
FT                 AAGGGPLTPASPARQTRPDGPGGATLRHNAESLPPLPRRGGGRGKGLLSPP
FT                 QGRKXGRAAVSAARRGPGLRRGPDTPGLYPQQHQGKRRGRDGVPLPRPRAD
FT                 "
XX
SQ   Sequence 3513 BP; 628 A; 1129 C; 1249 G; 501 T; 6 other;
     ggactttgcg gcggggctcg gcctggtcct tctgaaccgg ggccgggtca gcacctacgt        60
     gggggccggg ggggagtcca tcgtcgacgt gacgtgggcc tcccccggcg cccttaacag       120
     ggtaaaggga tggcaagtgg agaccggctc cttggaagaa ctgtctgatc acagacttat       180
     ctccatggag ctggtctccc cccccccccc ccgcggaggt gcgtgagcaa cgccgccgca       240
     ancgggccgg aaancgatgg gtcctgaaga aactcgaccc cgaagccctc gaggtcagtc       300
     tcctcgcctc cacttggccg gagggaggag ctgacctcgg agccgaggag gaggcggagc       360
     gcctatgcga gatgatgtcg cgcgcatgcg acgcctccat gccccgcagc agaccaatgg       420
     cgcgtcgtgc cgcctattgg tggtccgcgg agctcgccga actgaggcgg gctaccgtgg       480
     ccgccaggcg ggcacacacg cgcgccaagc ggcggggcat ggaggatgcg ttgaacaacg       540
     ccgcggcggt cctcagggaa gccaggaagg ccctgaggac cgccatagcg cgggcgaagg       600
     cagcggcctg ggacgagctg ctctccgagc tggaccgcga cccatggggg aggccttata       660
     aaatagtgat gaaaaggctc cgcccgtggg cgcccccagt ctcggagacg ctggaccccc       720
     agttcctcgg ngaggtggtg gacaagttgt tccccaccag ggggagggac atcccggaga       780
     agaccggccc tcccccagga tggaccgagg aactggaggt gtccaggcac gaaatggtcg       840
     cggccttcgc ccgcataacg ggaagaaagg cgaaggcgcc cgggccggac ggaatacacg       900
     ccaaggtctg ggcccgggcg tcttcgataa taggggaggc acttcgtggc ccgtacacga       960
     agtgcctccg ggaaggaact ttccccagga ggtggaagag ggcccggctt gtcctcctta      1020
     aaaaggaggg caagccagcg gagagtccct ccgcgtatag gcccctctgt atgctggatg      1080
     atgcgggcaa gatcttcgag cgtatcatcg ccaaccgcat catccggcat atgtcccgga      1140
     atggtcccga tttgtccccc ggacaatatg gattccgaga ggcgagatcg accgtcgacg      1200
     cgatacgaca ggtccgatcc ctctcggagt ccatcacggg ggacgggaag gtggcgttgg      1260
     cgatatccct ggatatcgcc aacgccttta atagtatccc ntggggcgag gtagtggcgg      1320
     cgctcagcga gcattttcgc ttgccgccct acctcgtcgc catcgttcgg gactacttcc      1380
     gggacagggt gctggagttc cgggacaaaa ccggactcca gcagcggagg gacatgtcgt      1440
     gtggcgttcc gcaggggtcc gtgctgggcc ccctgctatg gaacgccaca tacgacaagg      1500
     tgctccgcgg ggccctcccc cccggctgcc acgtcgtcgg atacgctgac gacacgttcg      1560
     tggtggccgg gggagcctcc tgggtgatag cgattgccat gggcaattgg gcggtgaact      1620
     gtgtcgtcgg ctccatcaag agcctgggcc tgagggtggc cccggagaag acggaagcca      1680
     tcttcttcca cgatggctcc tcccgggtac cgccccgggc cttcgtccgg gtggacaaca      1740
     cccgggtccg agtgggggca accctaaaat atttggggtt gctattggac ggtcgctggg      1800
     cctttgtcga gcatttcgac aaactggccc agcgattggg caggaggacg gacgccctcc      1860
     tggggttgat gcccaacctc cgaggtccga gagtcggtgc gaggcgcgcg tacgcctacg      1920
     cggccatggc tggggctctg tatggagccc cagtctggtt ccgcgaggcg ctggccagcc      1980
     gccgcatacg agacgtgctg cacgcagtgc agcggcggct ggcgcgaagg attgtgcgcg      2040
     cgtaccgcac cgcccctagc gcggcgacca tggtactggc ggggctcccc ccggcggaat      2100
     tcacggccga cgctctggca tggtcatacg ccagagcgaa ggccgtccgc ctgcaggggg      2160
     gagtggttac ccccagggtc gccgcgctac tacgggagag ggcacgccgg cgggccatga      2220
     gagcttggcg agagagcctc gccaacgacc cgccggcggc aggatctcgg atcttggagg      2280
     ccgtcctacc ccacttggac gaatgggtgg gccgcccttg gggcggcttg tcctaccgga      2340
     cgacacaggt gctcaccggg catggctgct tcggtgagta cctgtgcagg atacgcaagg      2400
     agccgacgac gcagtgccac cactgcgagg cggaccggga ctccgcgcag cacacgctgg      2460
     aagactgtcc agcgtgggag gagctgcgcg gagtcctgag agaagaaatc ggcgacgacc      2520
     tctccctgcg ggccatcatt agccagatgg tcagcaggga gagggcatgg gtcgcggtct      2580
     cctccttctg cgagcaagta atgcggcaga aggaggaggc cgaaacagta agagagagga      2640
     ggccgggggg acgcatgccc cccggcgaag gcaacgacgg taggggcggc ggggacgggg      2700
     gccacgaccc accttggctc cctccccggc cgccccgaag aagaaggcct gccccccgcc      2760
     ccccgggccc cgcggcccgt ctgcnaaaag gcggcggggg gccagcagat cagccgcggt      2820
     cgccccctcc ctccccacaa ttgaggagga ggggagcgac agcgccaata tggagaggag      2880
     gaggcgaccc tcctcccctg cggctgccgg ccccgccttc gggacacgca gccgcgggag      2940
     gagggcccct cacaccggcg agcccggcga ggcagacccg acctgacggt ccggggggag      3000
     cgaccctgcg acataacgcg gagtcgctcc ccccgctgcc tcgccggggc ggggggagag      3060
     ggaagggtct tctctccccc ccccagggta gaaagnaggg ccgcgccgcc gtcagcgcgg      3120
     cgcgaagagg cccggggtta cggcgggggc cggatacccc gggcttgtac ccccaacaac      3180
     accaggggaa gaggcggggg agggacggtg tccccctccc ccgacctagg gcagactagg      3240
     ccctcaagcc ctgccggggg cgcccatcgc tagggcgccc ctggcgagcc gagtcggccg      3300
     ccaaggccga ccgggtccgg ggggctccgg aagtatgctg cacgcgttcc cggagccccc      3360
     cagtcatgga ccagggcagg acacccggag aggttttagt gggtaggccc tcgccggcac      3420
     gtcgccggcg ggggagagcc ccacataacc accaggcctc ccccggggcc tggggtatgc      3480
     ggtaacgcat ttcctctccg tgaacaaaaa aaa                                   3513
//
ID   R1-2_TCas   repbase;    DNA;    INV; 3446 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 24.09, Created)
DT   11-JAN-2013 (Rel. 24.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Tribolium castaneum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-2_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3446
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the red flour beetle genome.";
RL   Repbase Reports 19(9), 1799-1799 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The ORF is likely broken. The 3'
CC   terminus looks similar to insect-type telomeric repeats (TTAGG)n,
CC   though the telomeric sequence of Tribolium is (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1307
FT                 /product="R1-2_TCas_1p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MRKQNINVVIAKEPGNKTQITLQGQPTAQFTNTGCKR
FT                 PLKILTLMDNTISIIQLNCNGAKLATAELVKFALDNKVQLALLQEPHRVKC
FT                 GQNYKLSGISTAISCFATNDPKFQTAILCFDPSLNPLFYPQLSNKFLTLLS
FT                 ISVKNVQIYCLSVYLPPSESPLPIFEHLHKIMEFVAGNRIIICGDFNSRSQ
FT                 LWFDRFNDRKSHIIEEFVANYNLNLANQPNNLPTFQTVNGESNIDLTLFSN
FT                 DPFIEISNWKVENATSSDHNLISFRINKNLAYADHATPCVNYRLDLTSIKD
FT                 EVLQPHVDDLMSLLDERFSTIDSIPEIENATKELYSGLAEIFSNTGKNAKI
FT                 LWEGPIGGTKNWRDFEKSILRKRLSFIATDFENIPTIFSRK"
FT   CDS           1079..3409
FT                 /product="R1-2_TCas_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="KIFNDRLHPGNRKCDKGTIQRTCGDFFKHGKKRKNFV
FT                 GRPDWWNEELERFRKVYLAKKTLFYRNRFREYSDHLFAEMTRAKQTFKEKV
FT                 EKRRQKCWLEFAENDLARNPWGVVYKLASEKFKTRGILQSFQTDEDDNITR
FT                 DFQSTMEFLITNLLPDDDPDANTEEQRVTQSDFRTTTAEVGSDVVITEEEV
FT                 DNFVSQIQNKKAPGLDNLKGRILKKLHPKITPLITRIYNACWTLNYFPTTW
FT                 KKGNLVVLLKDPKASHANIKNYRPITLLPEHGKIFEKTIRRKLEEELSPLH
FT                 SQRQFGFVKGRSTSDALHSLVSTIRDSQAKYVATIFFDIKGAFDNLWWPSL
FT                 IKALRRRGATPKLTAMIKSYLTDRVVQFTQGDFTVRKTCTKGCPQGSVLGP
FT                 TLWNLIMDVLLNSDWPDFATPIAYADDLVVIVESDLRSQLKIRLTQVINKI
FT                 TDWATRNKLSVSETKTKLMINKSPPRTHHRDLDIRIYGSRIALVKTQKYLG
FT                 ILLDSKLQFESHASYSAKKIWQITMGLRSLAAKKYGQTCNKSLEAIYYGAI
FT                 VPILTYGSRVWSDRLHIVKNQRQYFCTSAVQPDFREVLRFGFEENSCCSRW
FT                 TLAYGHRIQTRHCISEIKHGRNVLFFDELITPQTFDSIRHCREYVNLRALD
FT                 RWQHRWETSTKGRISFEFFPDVFRRLEGPPITFSHHKSQVPTGHGNFGIHQ
FT                 LRLGKSENSKLCPNCPDFDDDPVHRILEGPLFGEVQERIRGITGTWPPDLT
FT                 QVPFIDNDEVFSALSLDLTPPNVTLE"
XX
SQ   Sequence 3446 BP; 1075 A; 765 C; 718 G; 887 T; 1 other;
     tagctggaag tctttacaca ttagagacta tctcagagtc acgcgctgtt tcaaatgcca        60
     aaagttcggg cacgtatcga agttttgcaa ttccgaaaag caatgtggat actgtgctag       120
     cactgaccac gaatcagtga catgtaaakt taaaaatgag gaaacaaaac ataaatgtag       180
     taattgcgaa agagccgggc aacaagacac aaatcacgct gcagggtcag ccgactgccc       240
     aatttacaaa caccggctgc aagaggccat taaaaatatt gactttgatg gataatacaa       300
     tcagtattat tcaattaaat tgcaacggcg cgaaattggc aacggcagag ttagtaaaat       360
     ttgcacttga taacaaagtt caattagctt tattacaaga accgcataga gttaaatgtg       420
     ggcaaaatta caaattgtca ggaatctcga ccgcaattag ctgctttgca actaacgatc       480
     cgaaatttca aacggcgatt ctgtgttttg accctagttt aaatccatta ttttaccctc       540
     agctttctaa taaattctta acattgcttt ccatttcggt gaaaaatgta caaatttatt       600
     gtttgagcgt ctacctgcct ccaagtgaaa gcccgttgcc aatttttgaa cacctgcaca       660
     agataatgga atttgtagca ggtaatagaa tcattatttg tggagatttt aactcaaggt       720
     cgcagctttg gtttgaccgg tttaacgaca gaaagtcaca tattattgag gaattcgttg       780
     caaattataa tttaaattta gccaaccaac caaataattt accgactttt caaaccgtca       840
     atggcgaatc aaatattgat ctaacacttt tttcaaacga tccatttatt gaaatttcaa       900
     actggaaagt tgaaaatgct acgtcatcgg atcacaattt aattagcttt agaatcaata       960
     aaaatcttgc ttatgcagac catgctacac cttgtgttaa ttacagattg gacttgacct      1020
     cgatcaaaga tgaagttctt caaccgcatg tcgatgacct gatgagcctt ttggatgaaa      1080
     gattttcaac gatcgactcc atcccggaaa tcgaaaatgc gacaaaggaa ctatacagcg      1140
     gacttgcgga gattttttca aacacgggaa aaaacgcaaa aattttgtgg gaaggcccga      1200
     ttggtggaac gaagaattgg agagatttcg aaaagtctat cttgcgaaaa agactctctt      1260
     ttatcgcaac agatttcgag aatattccga ccatcttttc gcggaaatga ccagggccaa      1320
     gcaaactttc aaagagaaag tggagaagcg gagacagaaa tgctggttgg aattcgccga      1380
     gaatgacctg gcaaggaacc cctggggagt tgtctacaaa ttggcctctg aaaaattcaa      1440
     aactcgtgga attttgcaat cttttcaaac cgacgaggac gacaacataa ccagggattt      1500
     ccaatcaacc atggaatttc tcattacgaa tttacttccg gacgacgacc ctgacgccaa      1560
     caccgaggag caacgtgtca ctcaaagcga ttttcgaaca accactgcgg aagtggggag      1620
     tgacgttgtg atcaccgagg aggaggtcga caattttgtc tcgcaaatcc agaacaaaaa      1680
     agccccgggc cttgacaatt taaaaggaag aattctgaaa aaattgcacc ccaaaattac      1740
     cccgctgata accagaatct acaacgcgtg ttggacccta aattattttc cgactacctg      1800
     gaaaaagggc aaccttgtag ttctgctgaa agaccccaaa gcaagccacg caaatattaa      1860
     gaattatcgc ccgatcacgc tgcttccgga acatggaaaa atcttcgaga aaaccatcag      1920
     gagaaagctg gaggaagaat tgtcgccgtt acattctcaa cgccaatttg gatttgtcaa      1980
     aggtcgttcg acaagtgatg cgttgcactc acttgtctca acaattcgag actcccaggc      2040
     caagtatgtg gcgacaatct ttttcgacat taagggcgcg ttcgataatt tgtggtggcc      2100
     gtctctcata aaagctttga gaagacgagg tgcgacccca aaattgacag ctatgatcaa      2160
     aagctacttg accgatcgag tagtgcaatt tactcaagga gacttcaccg ttcggaaaac      2220
     ctgcacaaaa ggctgtcctc aaggatccgt tttgggcccc actttatgga acttgatcat      2280
     ggacgttctt ttgaactcag attggccgga ctttgcaact ccaattgcat atgctgacga      2340
     tcttgttgtc atcgtagagt cggatcttcg ttcccaatta aaaattcgac taactcaggt      2400
     aattaacaaa attacagatt gggctactcg taacaaattg agtgtttcag agacgaagac      2460
     aaaactcatg attaataaat cccccccgag aactcaccat cgtgacctcg acatcaggat      2520
     ttacggcagc agaattgcac ttgtgaagac acaaaagtat cttggcatac ttcttgactc      2580
     taaactgcaa tttgagagcc atgccagtta ttctgcaaag aaaatctggc aaatcacgat      2640
     gggtctacga agtctcgccg ccaaaaagta tgggcaaacc tgcaataaat cattggaagc      2700
     gatttattat ggagcgattg tccccattct gacgtacggc agccgtgtct ggtcagacag      2760
     actccatatt gtcaaaaacc agcgacaata cttctgcaca agcgccgttc aaccggattt      2820
     tcgcgaagtg ctacgcttcg gtttcgaaga aaacagctgc tgttctcgct ggacacttgc      2880
     ctacggacat cgaattcaaa ctcgacactg catcagcgaa ataaaacatg gccgcaatgt      2940
     tttattcttc gatgaattga tcacccccca gacattcgat tccataaggc actgcagaga      3000
     atatgttaat cttcgtgcgc tcgaccgttg gcaacacaga tgggaaacat caacgaaagg      3060
     acggatttcg tttgaatttt ttccggacgt ttttcgccga cttgaaggcc ccccaatcac      3120
     gttttcgcat cacaagtctc aggttcccac gggacatggg aactttggta tccaccaatt      3180
     acgacttgga aaaagcgaaa actcaaaact ctgtccaaat tgccccgact ttgacgatga      3240
     cccggttcac cgcatcttgg aaggccccct tttcggggaa gttcaggaac ggatccgggg      3300
     aatcaccgga acctggccac ctgacctcac tcaggtgcca ttcattgaca atgacgaagt      3360
     gtttagtgca ctttccctgg acttgacccc cccgaatgtg actttagaat aagttagtta      3420
     ggttagaatg taatgttagg ttagga                                           3446
//
ID   R1-3B_DEl   repbase;    DNA;    INV; 3386 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3B_DEl;
KW   R1-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3386
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 565-565 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. It is followed by TGTCCCTATCTACT,
CC   which is the same as the TSD sequence of R1.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(75..335,339..1262,1308..2744,2834..3106)
FT                 /product="R1-3B_DEl_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="STRNLIPKXVQSESAHKSKIRCVFRVCAFVFARKIAV
FT                 FCWKFSTCATCVLEKVSASLSEREQCCAKSAVEQLFSGCVSRLTAELPPRR
FT                 ECVSALVSSYTKTEIVNSSARWRRLSRKGVATMSASESEMSACSRSSSATR
FT                 DAGRGRRKGKRGKGTPRDASQAKVAAVHGATGCPEPMLEETLSSLEGQGMS
FT                 LAATEAAEIAAANCREACRVNRREDSEDVAAGIAARSAAIMAEASLASAAL
FT                 SQAREARVVSVTTAAHATEVPKSSATSVVAAGHAAVLHELSTAQKMARRGM
FT                 LLMSSEQASWMSEALSRYDELVVALMLRCGALESPTVASYAATAALGAHPV
FT                 APHAVPVAPVCCPTVSENSRNVVGGSGLRRPGAVRKTNCGEKSVRKSLQPL
FT                 EFARRSXRGGRRRHVTSTVAASTAKHVLGIFVDFKGAFDHVEWSALLDRLV
FT                 GVGCREIRLWNSFFSGRRASIVXRYEVXTVPVTRGCLQGSISGPFIWNLLM
FT                 DVLLQRLETHCGLSAYADDLLLLVEGRSREDIERKGTELMEIVEAWGTEVG
FT                 VSVSTSKTAIMLLKGKLDPRRHPTVRLAGASLPYVQEXRYLGITIGERLSF
FT                 LPHIEVLRDRLAGVTAALARVLRVDWGLSPRAKRVIYAGLMTPCVLFGASV
FT                 WYNKVXRGKARDRLLSCQRLILLGCLPVCRTVSTVALQVLAGAPPMDLDAH
FT                 RSAIKFKLRKGVPLSDSDWLSGQDLSELDWNSKXALLDERLLNEXQLRWDG
FT                 AIHGRVTHKFFPEAAFVYNRKDFGFTLRAGFLLXGHGSLNEFLXGKGLSNT
FT                 PACSCGGELEDWLHILCVCPLYADLRHLEALGVVQEHGSWNVTGIVETPER
FT                 MRLLGTFAQAVFERRRTDPSRRRRILPQLVIACRTRRLKWHMSTLSGLVGA
FT                 KGGGPTEPLISVPRVGQFPRLPIEVGPLVGVSWWLWLTPISRVELSGSTWS
FT                 CVIQLGCCDP"
XX
SQ   Sequence 3386 BP; 719 A; 827 C; 1059 G; 768 T; 13 other;
     cagtcggtct tggaaagttt cggtgagcgg acgtgttttt cgtgcgctcc tgcgtgtttt        60
     tcggtatcgg ctaaagtacg cggaatttaa ttccgaaaas tgttcagtcc gaaagtgctc       120
     acaaaagtaa gattcggtgc gtttttcgcg tttgtgcgtt tgtatttgcg cggaaaatcg       180
     cagttttctg ctggaaattt tccacttgcg ccacgtgcgt tttggaaaaa gtgagcgcgt       240
     cgctctctga gagagagcag tgctgtgcca agtcagctgt tgagcagctg tttagcgggt       300
     gtgtgtcccg gctaactgcg gagttgccac ctcgttgacg ggagtgtgta tcggctttgg       360
     tgagtagtta tacaaaaacc gaaatcgtaa atagctccgc cagatggcgt cggctatccc       420
     gaaagggggt cgccaccatg agcgcttcag aaagcgagat gtcggcgtgc agccggtcaa       480
     gcagcgcgac gagggatgca ggcagaggtc gccgtaaagg caagcgcggc aagggtacgc       540
     cgcgtgatgc ctcgcaggca aaagttgctg ctgtgcatgg cgcaactggc tgcccggagc       600
     cgatgcttga ggagacgctc tcctcattgg aggggcaggg gatgtcgctt gcagccacgg       660
     aggctgctga gattgctgcc gcgaactgcc gcgaagcctg ccgcgtcaac cgccgcgaag       720
     actctgagga tgttgcagct gggattgccg cgaggagcgc cgccattatg gccgaggcca       780
     gcttggcgtc tgctgccttg tcgcaagcta gggaagcccg cgtcgtctcg gtaacgacgg       840
     ccgcccatgc gaccgaagtg ccgaaatcga gcgccacgag tgtagtcgcc gccggacacg       900
     ccgccgtgct acatgagctt tccacagctc agaagatggc taggcgtggc atgctcttga       960
     tgagcagcga gcaagcaagc tggatgtcgg aggcgttaag tcgctacgac gaactagtcg      1020
     tggcactgat gttgcgctgc ggagcactgg agtcccccac ggttgcctcg tatgcagcca      1080
     ccgctgctct gggcgcgcac cctgttgccc ctcatgctgt cccagtcgcc cccgtgtgct      1140
     gccccacggt tagcgaaaat tcgcgaaacg tggtcggcgg tagtggcctg cgacgacccg      1200
     gcgctgtcag gaagacaaat tgcggagaaa agtccgtaag gaagtcgctc cagcccttgg      1260
     agtaagggtg cacgaggtgc gcgagctcaa gcgaggaggt gcgataattc gcacgccggt      1320
     cgcwgcgtgg aggacgccgg agacacgtaa cgagtacagt cgctgccagt acggcgaaac      1380
     atgttctcgg aatcttcgtg gactttaaag gtgcctttga ccatgtggaa tggagcgcac      1440
     tgctcgatcg actcgtcggc gttggctgtc gagaaattcg cttgtggaac agctttttct      1500
     ccggtcgacg cgcaagtatc gttakmagat atgaagtakc cacagtccct gtcacacggg      1560
     gctgcctgca agggtctatt agtggtccat tcatatggaa cctgctgatg gatgtgctgc      1620
     ttcagcgctt ggagacacat tgtggcttaa gtgcatatgc ggacgactta cttctccttg      1680
     ttgaagggag gagtcgtgag gacatcgagc ggaagggaac ggagcttatg gagatcgtcg      1740
     aagcctgggg aactgaagtt ggagtgagtg tgtcgaccag caagacggca atcatgttgc      1800
     tcaagggcaa attagacccg aggcgacatc ctacggtacg gcttgctgga gctagcctgc      1860
     cttacgtaca ggaatamcgg taccttggta tcacaattgg cgaacggttg agtttcctcc      1920
     ctcacataga ggtattgcga gaccgactgg cgggtgtcac ggcagcactg gcacgtgtac      1980
     tgcgggttga ctggggactc agcccccgcg cgaagcgtgt tatctacgcc ggtctaatga      2040
     caccttgcgt gctatttggt gcctcggttt ggtacaacaa ggtgwgtcga ggcaaagccc      2100
     gagaccgtct tttatcgtgc caaaggttaa tccttttagg atgcctaccg gtwtgccgca      2160
     cagtgtccac agtggcactg caggtgcttg ctggtgctcc tccaatggat ttggatgcac      2220
     accgtagtgc aattaaattc aagctcagga aaggagtgcc cctgagtgac agcgactggc      2280
     tttccggaca ggacctctcg gaattggact ggaacagcaa aawggcgttg ttagacgaac      2340
     gtctgctaaa tgagwggcag ctcagatggg acggwgcgat acacggtcgt gtgacgcaca      2400
     agttcttccc agaggcagcg tttgtttaca ataggaaaga ctttggtttt accctaagag      2460
     ccggattttt gctgwcagga catgggtcgc tgaacgaatt tctgmtgggg aaaggtctca      2520
     gcaacacacc agcatgctca tgcggtgggg agctggaaga ctggctgcac atcttatgtg      2580
     tttgccccct ttacgcggac ttgcgtcact tggaggctct aggcgtagtg caggaacatg      2640
     gcagctggaa cgtgacggga atagttgaga cccctgaaag gatgcgtctc ctaggaacgt      2700
     tcgcacaggc agtcttcgag aggcgaagga cggatccatc gaggtaataa ccccgggaac      2760
     actggacagg accatttttg tggataacgc gttgcggagg aggggctttt agcctgtggt      2820
     gccgtgtggt tagcggcgaa gaatactgcc acagcttgtc attgcttgtc gtacgaggcg      2880
     actaaaatgg cacatgagca ccctatccgg gcttgtcgga gccaaagggg gagggcctac      2940
     cgagccctta atttcggtac cacgggttgg gcagtttcca aggctgccca ttgaggtcgg      3000
     cccccttgtg ggagtatcgt ggtggctgtg gttgacaccc atatcgcggg tagaactctc      3060
     gggttcgacg tggagttgcg ttatacaact cgggtgctgt gacccataga gcagcagaga      3120
     ttttagatgg atctcgcccc tcagcaaggg ggagtgtttg cccggcaagc aagcactcat      3180
     attgacaccg gggtagttgc tatctacata gctatagctt ctagatcggg ccgttcgtca      3240
     ggtgcttaat ctagacacat gcactatatc ctcacttgcg ggtgtgttat gtactcactt      3300
     gtgggtgcat gatgtattaa cttgtgggta tattagagtg ccgtgcgcca cgtaaaaata      3360
     agtgtcggag agatctgatt tacacc                                           3386
//
ID   R1-3_AP     repbase;    DNA;    INV; 6097 BP.
XX
AC   Contig971;
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 4)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_AP.
XX
NM   R1-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-6097
RA   Jurka J.;
RT   "Non-LTR retrotransposons from pea aphid.";
RL   Repbase Reports 9(8), 1796-1796 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Inserted at the same site as other R1 elements in the 28S rRNA
CC   genes. TSDs are TGTCCCTATCTACTA.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           787..2142
FT                 /product="R1-3_AP_1p"
FT                 /translation="MEDMEDTQEPGSPVQGTSHQPPRSPMSSGESPEQKKK
FT                 KGSPDPVPLARESIGWIRYSLETAATKKSNVPVETQRSMFDKLKTLDSAIH
FT                 DMVIMNLQLASQLEESRRSAEICVGAAAAQFGTKLWLREVAHEQTLEAVVA
FT                 RYAEREALRLHELEKRGPPPEQVAMQEVPAETFAQVTRAARPAKTTAGRKP
FT                 DRSVSRAANRNKALKEAKLTEHIPAYIIKSCGGKDPKEVRSVVWSKVASQN
FT                 IQPKCHSIIAKDGRVIIKPMNRETADILKSLSKSSSLIVEDSPRWPRVMFR
FT                 GVQTDIRSEDLQSSIVSQNAHLNIDEDTTDEILRPIFKQGKRDMDTTNWVM
FT                 EVNPRYYDRFEDAIVYIGFMRCKVAAYEEVTQCHVCLKYGHPASKCQEKEP
FT                 RSTHCSRAGHKAADCPAAEGDPTCANCRGKHNARDKTCSARTAFLLGRAKR
FT                 TDYGVTQ"
FT   CDS           2142..5162
FT                 /product="R1-3_AP_2p"
FT                 /translation="MSAQPLTIVQLNMGRASAVSDLLLEFCQNNEVDVALV
FT                 QEPYTNRGRLVGFEVAPFRCYLSKPTRRRGGLLHLDHGAAIIVFNPNLVVA
FT                 ARDSDLIENFVSIDIDCAADGIITMISGYFKFRVPTAIHVEVLDRIFQSTT
FT                 NEVLIALDANAFSTRWFSRINDRRGETLTTWLDEHDLHTVNTRSPFTTFNG
FT                 PRGRTNIDVTIFGQSLLGKIGDWKVVPDVTTSDHQVLMYTLHLQRRQFIHR
FT                 TTRFNLDQRQRDAFVQEFARATTQRDDEHENLDSKAQHLHEDITVAAELFA
FT                 PRRNPRKKVVPPWWSPELTRLRKEVRNASRRCRQTGDRVVYNTRRNEYTQL
FT                 LRSSKVASWRRFCTLEGKNPWGKLYRWMKGNKATVAIGLIKRADGSLCQDI
FT                 DESVTTLLNVLIPNDPTRPVGVRTEAVTGNLNPIACPELKALAWTIAPNRA
FT                 PGTDGITGSMVRALWLTLAPRLLSITNECLARARFPESWKVAQVVPILKGK
FT                 DRDVMQPKSYRPVSLLPVLGKVIEKVINLRLQEQITPSLTGRQYGFTRDRS
FT                 TFDAFQNLLTWSDLRQERHVLTIFHDITGAFDNLEWTALQRDLQSLGASNH
FT                 IRLLIADYLSGRTAKITIGGVEKSVRLTKGCPQGSILGPVLWNVTMEALLR
FT                 VVFPEHVNIQAYADDVAMSVAAPNRRILIERAEEALIPVLAWAEERGLQFS
FT                 AQKSVAMITKGDMVPGFTLAFGGERIVTVDCVKYLGIRLDQKRQYTEHLDE
FT                 MKKASETIFTKMRGTLGSGWGMKRENIAILYRGVFLPKITYGARFWAHTTT
FT                 SNRAIKLLGSIQRRALIGMTGAYCTMSTDALQILAGVPPLDLEIHWMVLKA
FT                 EAATIPNHLRPQTLANGREELLEAWQARWAATQKGRWTYRIFPEVRNRLKL
FT                 PLALGHEVTQFLSRHGNFRAKLAGFDLQPTPLCVCGDGEEDVGHVLFDCAL
FT                 HIEHRAHLELAVHRAGYLWPCDPAVLVSTKRIYSALVRFAKTAAYLERTVR
FT                 A"
XX
SQ   Sequence 6097 BP; 1553 A; 1487 C; 1744 G; 1313 T; 0 other;
     gtgtccactt tacagtggag tccgtcagac gtgtgttgct acagttgatc gcgctccgag        60
     gggcgccctc tagcggtttt ccacggcata cgagctaagt cggtgagttc ttgcaaattt       120
     tttgtgtttt cagttcgagc cagtgcataa taagttcgcg tacagaccgg tgccggtttt       180
     gagtcggtct gtccaaaacc ccctctgtgg ggaccgtttt tgtgtccgcc cataaggttt       240
     acacggccgc cttgtggtaa tagctggtat ttgccgagcg atttttggat tttcgtcagt       300
     tacgagacca ggcgtcaagt gcctgacggc gtgagttcgg ctattatata attgtctatt       360
     tctgtgcatc acagccccca cttagtggct ggtataggta gtataccacc ccctccatct       420
     ttctttgcgc agttatatct ccgtaagttt tacacggatc aacccgggac caagggggaa       480
     cccagtttct tggggttagg ttatcgggaa caaagccccc acccccccca cccgttttga       540
     gttaagtata actcggcggg aaatagtggt agagtcgtag gggcaacgcc aatctatccg       600
     ccagggattg ggccataatt ttccacatta gggaacgggg caccccccca cccccctttt       660
     tgagttttgt tttttcgatt ggaaatcggt tcatcagtac cataggacct tcccccccac       720
     agggaaactt ggggtttcga atttaacccc cccgaaaggg gtgacaaaaa ttgagtttcc       780
     tccaaaatgg aggatatgga ggatacccag gagccaggtt cgccggtgca aggcaccagt       840
     caccagccgc ccaggtcccc catgtcatct ggggaatcac cagagcaaaa gaagaagaag       900
     ggatcaccgg accccgtgcc tctggcccga gaatcgatcg ggtggatccg ctacagcctg       960
     gagacagcgg ccacgaagaa atcgaacgtg ccggtggaga cccagcggtc catgtttgac      1020
     aagttaaaaa ctttggactc ggcgattcat gacatggtca tcatgaacct ccagctcgca      1080
     agccagctgg aggaatcgag gaggtcggca gaaatttgcg tgggggcagc agccgctcaa      1140
     ttcgggacta agctctggct aagggaagtc gcccacgagc aaacccttga ggccgtcgtt      1200
     gcaaggtatg cagaaaggga agcgttgcgc ctacatgagt tggagaagag aggtcctccc      1260
     ccagagcagg ttgccatgca ggaggttcct gctgagacct ttgcccaggt gacaagagcc      1320
     gccaggccgg ctaaaaccac tgctgggcgt aaacctgaca gatcagtgtc cagggcagca      1380
     aataggaaca aggcactcaa ggaggcaaaa ctaacggagc acattccggc gtatataatt      1440
     aaatcttgcg gtgggaaaga cccaaaggag gtacggagcg tcgtatggag caaagtggct      1500
     agtcaaaata tacagcccaa gtgccactct ataatagcta aagatggtag ggtcatcatt      1560
     aagccaatga accgtgaaac ggcggatata ttgaagtccc tatctaagtc ctcgtccctc      1620
     atcgtggaag acagcccccg atggcccagg gttatgttta ggggagtcca aacggacatc      1680
     aggtctgagg acctgcagag ttccattgtc agccagaatg ctcacctaaa catcgacgag      1740
     gacacgacag acgagatcct gaggccaatc tttaaacagg gtaaacgaga tatggacaca      1800
     acaaactggg tcatggaggt caacccaaga tactatgaca ggtttgagga tgctatagtt      1860
     tatataggat tcatgaggtg taaggtagcc gcatacgagg aggtgaccca atgtcatgtc      1920
     tgcctaaagt acgggcaccc agcctcgaag tgccaagaga aggagccgag gtccacgcac      1980
     tgctccagag caggtcataa agcagcggat tgtccagctg cggagggtga ccccacttgt      2040
     gctaattgta ggggaaagca caatgctcgt gacaaaacct gttcggcaag gaccgcgttc      2100
     cttctgggga gggccaagag gaccgactac ggggttacgc aatgagcgcc caaccactca      2160
     ccattgtgca gctaaatatg ggcagggcct cagcagtcag tgatctactg ctggaatttt      2220
     gccaaaataa tgaggtcgat gtcgctctgg tacaggagcc ctatacaaac agaggtaggc      2280
     tggtgggatt tgaggtcgct ccttttaggt gctacctatc gaaacctacg aggagaagag      2340
     gaggcctact gcatttggac catggtgccg caatcatagt ctttaaccca aacctagttg      2400
     ttgcggctag ggactcggac cttattgaaa actttgtttc aattgacata gattgcgcgg      2460
     ctgatgggat tatcaccatg ataagtggct attttaagtt cagggtccca acagcgattc      2520
     atgtagaggt actggatcgc atctttcaat ccacaactaa cgaggttttg attgccctag      2580
     atgctaacgc tttttcaacc aggtggttca gtcgtataaa cgacagacgt ggggaaaccc      2640
     tgaccacctg gctcgatgag catgacctac acacagttaa cactcggagc ccgttcacga      2700
     ctttcaacgg acccagaggg aggacaaata ttgacgtgac aattttcggc cagagtttgc      2760
     tgggaaaaat tggtgattgg aaggtcgtcc cggatgtcac cacgagtgac catcaagtgt      2820
     taatgtacac tctgcatctg cagcgaaggc aattcatcca ccgaactacc agatttaatc      2880
     tagatcaaag acaacgagat gcgtttgtgc aggagttcgc acgtgctaca acgcagagag      2940
     atgatgaaca tgaaaacctg gacagtaagg cgcaacacct gcatgaggac atcacggtgg      3000
     cggccgagtt atttgcccca aggagaaacc ccaggaagaa ggtggtccct ccttggtggt      3060
     ctccggagtt gaccagactc agaaaggagg ttcggaacgc ttcaaggcgg tgcaggcaga      3120
     ccggggaccg tgtagtgtac aataccagaa gaaacgaata tacccagctg cttaggtcaa      3180
     gtaaggtagc ttcttggagg aggttctgca ccctagaggg gaaaaacccc tgggggaagt      3240
     tatatcgatg gatgaagggt aataaggcaa cggtagctat tgggctcatt aaacgtgctg      3300
     atggatcatt atgccaggac attgatgaat cagtgaccac tcttctgaat gtgttgattc      3360
     caaatgaccc aacgcgcccg gttggggtcc gcacagaagc agtgactggg aatctcaacc      3420
     caattgcgtg tccagaactg aaggcactgg cttggactat cgctccaaat agggcaccag      3480
     gcacggatgg aattacgggg tcaatggtgc gtgcactctg gctaacgtta gcccccagac      3540
     tgctcagtat tacaaatgag tgcctagcta gggctaggtt ccctgagagt tggaaagttg      3600
     cccaggtcgt accgatctta aagggtaaag acagggatgt tatgcaaccc aaatcataca      3660
     ggccggttag cctgctgccg gttcttggga aggtgattga gaaagtaata aacctcaggc      3720
     ttcaagagca aattacccca agcctcacgg gtaggcaata cggttttacc agggatagat      3780
     caacctttga cgctttccaa aacctactca catggagtga cctcaggcaa gaacgacatg      3840
     tcctgacgat ttttcatgac ataaccgggg catttgataa ccttgaatgg actgcactgc      3900
     aacgtgatct acaaagtttg ggagccagca accacattag attactgatt gcggactacc      3960
     tcagcggccg cactgcgaaa ataactattg gcggggtgga aaagtcagta cggctcacga      4020
     aaggatgtcc gcagggttca atcctggggc cagttctatg gaatgttaca atggaggcat      4080
     tgctaagagt cgtatttccc gaacatgtta acatccaagc ttatgcggat gatgttgcca      4140
     tgtcggttgc ggcaccaaac agacgaatcc tcatcgagcg agccgaagag gcccttatac      4200
     cggtgctggc ctgggccgag gaaagaggcc tacaattctc tgctcaaaaa tcagtggcca      4260
     tgataactaa gggagatatg gttcctggtt tcacgttggc attcggtgga gagcggattg      4320
     tcacggtgga ttgtgtgaag tacctgggca tccggctgga tcagaagagg caatacaccg      4380
     agcaccttga tgaaatgaaa aaggcatcgg agacaatttt cacaaaaatg agagggaccc      4440
     ttggatccgg gtgggggatg aaaagagaga acatcgcaat tctgtacagg ggtgtcttcc      4500
     taccaaaaat tacgtacggg gctaggtttt gggcacacac aactacgagt aacagagcaa      4560
     ttaaattatt gggctcgata caaagaaggg cactaattgg aatgactggg gcatattgta      4620
     caatgtccac cgatgcactg cagattttag cgggggtccc accactagac ctcgaaatcc      4680
     actggatggt tttgaaagcg gaagcggcga cgattcctaa ccatttgcgt ccacagactt      4740
     tggcaaatgg cagagaggaa ctgcttgagg catggcaagc gaggtgggcc gcaacacaaa      4800
     aaggtaggtg gacctacagg attttcccgg aggtgcggaa taggttaaag ctacccttgg      4860
     ccttgggcca tgaggttaca cagtttctgt ctaggcatgg aaacttcagg gccaagttag      4920
     caggcttcga tctacaacca acgcccctgt gtgtgtgcgg agatggcgag gaagacgtgg      4980
     gccacgtact gtttgactgt gcccttcaca tcgaacatag agcgcacctg gagctggctg      5040
     ttcacagggc agggtatctg tggccttgtg acccggcggt gctggtctcc acaaagagaa      5100
     tttacagcgc actggtgaga tttgccaaaa cagcggccta cctggaacga acggtacggg      5160
     cataatacag gacggacacg acactctgcg cgccagagtg ccaaaccccg catgtgttct      5220
     gaacgagtgt caaggagtga gttggcagaa gcggttcaca tgtggggccg tcctgagggg      5280
     acactcgtgc gtcggggacg cgggtggcgc tgacgcggac aacagtggtt cgcggacaac      5340
     cggaggcgcc gcggtgaccg aaagcttcgg tgagtaggtc acactacatc gggctctgtg      5400
     tctggggcca tggaagaata cagacacagt ctgccccgct tgtcgtacaa ggcgacttaa      5460
     ggggcaggct tgcgacctac gcaccgcggg cgagcgcccg gggtaaaggc ccaccaagag      5520
     cctgctgagc cagcgaatcc tgggagactg ggcccgcctt gtcgaacatc caaccgatga      5580
     tgtcctactt aacgggggtg agatcggtac cacgggaagg gggggagccc cactgctccg      5640
     agttatgccc ggttcagtgc cctcctactc tgggcgcttc ggcgcccagt gccggattgg      5700
     tttcgtggtg gctgtagcgg gagctactgt atggttctag ccaatgctgg caggcgaagg      5760
     tcgctagtga acggctgtac cgcctatggc gttgcagttt ctcctgggca ctcagccggt      5820
     ctaccgtcga ataaaattgg cggaggttgc ccgtaaccaa aaacgggaag tgagaggata      5880
     ggtcacgacc tcaccagagg tggtatccgg tggctccagg ccggtgccgt ctggtacggg      5940
     tgcttcggcc ccggtgctgg tggcccttag acgacccccc gcggtgtggg cgcttcggcg      6000
     ccctcgcacg ggtgaacctc tatggctcgt aactagcgca cagcgctaat acacggtcca      6060
     tagttgtagc cgcaaggcat caaaccgagg atactcg                               6097
//
ID   R1-3_BM     repbase;    DNA;    INV; 2864 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2864
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1049-1049 (2010).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1713
FT                 /product="R1-3_BM_1p"
FT                 /translation="MVVSSCCSSPKRTTRKRAKGSKNASSDSSTEXEASRS
FT                 GSLVSRTRPSKRGRGRPPTTGQYVGLAAAKQAHLKAQREELELRAEQEVVE
FT                 SVHNLREKRRAVHLISGNITADPATRLQETAQMALTIAAKARNPKGTYIKA
FT                 LKEMATTIKEATEDLASRSANEETLRLQALSERQEAEILQLRKEVEDVRAE
FT                 MVRLAQTTAQPTPAPTLPNEDDERRLQIIMRAVGSMLDARLAGLEARLLPE
FT                 PRLRPPLAADARRRSRESEIDPDTAGLVSEATPPYAALPQLETNKKVKPKK
FT                 QKGNNKKTTPSAPPEPPAPPEPRAFPPAPAALTVSWATVARRGARPRREKE
FT                 PAPTTNAEGQRDRNPAPLKPKKKGRKKRLRAPRSQAVILRLHPEAIEKGLS
FT                 YREVLAEARASIDAGALGIPIEKVRSAITGAKILIVSGEDQIAKADLLAEK
FT                 LKEVLSSKRVTVTRPMVTAAIRISGLDDSLTEGDDMHRACAHRRGISCAAA
FT                 KLARLSANSLRRWQSRLAPRASIKPADPEE"
XX
SQ   Sequence 2864 BP; 671 A; 832 C; 949 G; 411 T; 1 other;
     ggggggggca caagctgttc cgggaaagag tccgagaagg acggggagaa aaggaagagg        60
     tccacaaggg acgaaagaga aacggtgcaa aacgaagacc gcaggagaga aagcagcgtt       120
     tgctcggagg acagcatggt ggtcagctcc tgctgttcat caccaaagag aacgacgcgc       180
     aaaagggcaa aaggctcgaa gaacgcaagc tccgacagca gtaccgaanc ggaggcgtct       240
     aggtcaggat cgttggtgtc caggaccaga ccatcgaaga gaggccgagg tcgtcctcca       300
     acgaccggcc aatacgtggg attggcggcg gcgaagcagg cacacttaaa agctcaacgt       360
     gaagagctgg agcttcgcgc tgaacaggag gtagtggaaa gcgtgcacaa cctgcgtgag       420
     aagaggcgcg cagtacattt aatatccggg aacataacag cagatcccgc gactaggctc       480
     caggagaccg cccagatggc ccttaccatc gcggcgaaag cgcgcaaccc gaaggggacg       540
     tacatcaaag cccttaagga gatggccaca acaataaagg aggccacgga agatctagct       600
     tccagatcgg ccaacgagga aaccctgagg ctgcaggcac tcagcgagag acaggaggcg       660
     gagatcctgc agctcaggaa ggaagtagag gacgtaagag cggaaatggt gcgcctcgct       720
     cagacgacag cgcagcccac tcccgcccca acactgccaa acgaagacga cgagcgacgc       780
     ctgcagataa tcatgcgagc agtcgggtcc atgctggacg cccgactcgc gggtctggag       840
     gcccgtctac tcccagagcc tcgcttgcga ccacctttgg ccgctgacgc aagaaggagg       900
     agcagagaga gcgaaatcga tccagacact gcaggtcttg tgtcggaggc gacgccgcct       960
     tatgcggctc tgccccagct tgagaccaac aagaaagtga agcccaagaa acagaagggc      1020
     aataacaaga agacgacgcc gtcagctcca cccgagccgc cagctccacc cgagccgcgc      1080
     gcattccctc cggcccccgc tgcccttacg gtcagttggg cgaccgttgc gcgtagagga      1140
     gcacggccga gaagggaaaa ggagccagca ccgacgacca acgcggaagg ccaacgagac      1200
     agaaaccctg ccccgctcaa gcctaagaag aaaggtagaa agaagagact tcgagctccg      1260
     cgctcgcagg ccgttattct gaggctgcac ccggaggcca tcgaaaaggg gctctcctac      1320
     cgggaggtgc tcgccgaggc gagggccagc atcgacgccg gagccttagg gatccccatc      1380
     gagaaggtcc ggtcagcaat aaccggagcc aaaatactca tagtgagcgg cgaggaccag      1440
     atcgcgaagg ccgacttgct ggccgagaag ctcaaggagg ttctctcttc caagagagta      1500
     acggtgacaa gaccgatggt gaccgctgca atccgcataa gcggacttga cgattcgctg      1560
     acggaggggg acgatatgca ccgagcttgc gcgcatcggc gggggatatc gtgcgcggcg      1620
     gcgaagcttg cgcgcttatc ggcgaattcg ctccgtcggt ggcagtcaag gctggcacct      1680
     agagcctcta tcaagcccgc ggatccggag gagtagaccg ccagggccac gcggggaggt      1740
     tctccgcgtt ccaggttctc gcccgtaacc cgatagcagc ggtgaagacg atctagctcc      1800
     atcgagatcg ttacagtgac gaagctgcgc atcgggtgga gcgaccttgt agaggaatca      1860
     gctagtccac ctgctggaaa atggcccgct cgagactaca atgcttccgc tgccactctc      1920
     cgctccaacc cccggcggcg cgccgctgcc acgcgttggg ccatgtgggt gcgcggtgcc      1980
     cgtcgtcggt cgaccgcagc cacgactgct accggtgcgg acagaccggc cacgtggcat      2040
     ccggatgcac actggcaccg cgatgcgccg tctgcgcctc cgccgggaaa ccagcggacc      2100
     acacttcggg gggcaaggcc tgtgcaaggc ccccgagaaa accgaggaga gaggacgtcg      2160
     ctgcacccgc ggccgcaccc gttgctgcag accgaagtca actcggcgag acgacgactc      2220
     cgatggacgt ccagcctccg tcgggcacaa ggaagaccgg ggctttatga agaaccgggc      2280
     atgccgatga accgaggagg aagtcgtgag gaggaggtcg tggacctcgg ttcgtaggca      2340
     gtgaaggcgg agcgggtggt gcgggcagaa agcccccacc cggctcctgc aggggccgtc      2400
     gattgctggg tgcgggggcg cccggtgctc ggcactaagg tcctgtgggg tggtggtgcg      2460
     ctgtggctcc ggtgcgcccc tcacgagtcg tggagatgag agggggaaga agtccccggt      2520
     ggcagatccc gcccaacgta acattggggt gggagccggc gaaggcgggc ctatggcgcg      2580
     cacatggcgg tacctgggtc cccgcccagc cggagtggag gagctcgttg gggtttagtc      2640
     ggtagtcgtt aagctgggcg ggtttggcga gagctgaact tagcccagcg cgcctttcta      2700
     aaggcgtagt ctccgtggac caattggttg agggcgcgga cctcggttcg cgacttcttc      2760
     ctctttcttc caccggaggc gcggagtccg acataacccg gtccgacccc cgtcggcagg      2820
     gtatccgtaa agactaggat tccccatcga taccaaaaaa aaaa                       2864
//
ID   R1-3_BTa    repbase;    DNA;    INV; 4728 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4728
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 718-718 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..1505
FT                 /product="R1-3_BTa_1p"
FT                 /translation="MTSTSERKAASESLRNELQSLSDILSVIPNLELLANH
FT                 VPNLADIYRDCINTFCQNLRTIITKEIAASTSHSDNRIVDSLKNLESKIET
FT                 LDSKLVTFKDDIKKDILQDAQLGHAKLQSAVNEIKISQASFSEIVKSNGTN
FT                 SPRKKPKRLEKRTEETKSGDFVAPKIKVGKALFSPSTDVHILEVKTTEDLE
FT                 ADNFPSLLKNNLKSKNFQIKNLKINKGGAKIVANDKVQAGQIQELLEKSDK
FT                 ISCKQISLRNPQIRIHDIDFDLSDDEILQDIYNKNDFIKQNARFNKDKFDS
FT                 GFKIVKTFQTHTDQKFNTRTIIVDCAPTIRHTLMNVRRVFIGFSSCPCFDD
FT                 IVPTRCYRCFRYGHPAKLCRAPNQLCHSCASPDHDSDACPVPTKDRIQCVA
FT                 CIASGKLTNLTHSIKDKRCPCYQQAMEEKLKKTNYGWEEEE"
FT   CDS           1414..4530
FT                 /product="R1-3_BTa_2p"
FT                 /translation="HTQLKTKDARVTNKQWRRSLKRLTMAGKKKNKKQDVR
FT                 LADSFSILLCNTGRVPDSHDAAKSLAADVGAGIIVLPEPNIYKANIEGNFC
FT                 DINNDVAVFTTKDLVGGCKNWQRFNGFVRFEYSDIILYGCYFHPAPAVSIP
FT                 EFNEILNSLDHNLKQQSKPVILVGDFNCRSMFWGDNKEDHRGRIFREWIEE
FT                 NDLLVHNDPKCSIPTFEGPMGSSYIDLVITSSSLQHQIRNLRVHTSENFSF
FT                 HHTITFSVNPVTNNSLPTLSKDNSPSGWWIKKEKMQDFSKIAKESVKNLPA
FT                 NSILTAISCLQIISDACNKVFQIKKNFGRKTPLPWWNSDLQCLKKKCSTIR
FT                 RAITRSRDKDTRNRLFAELKETTRTLRIEIKIAKGKIWNDWISELDNDIWG
FT                 RAYQIRKRRLKSPPGHENSTLSDQEVIEAVNNLFPTHEDCQWPLFVQEDIQ
FT                 DISMEELTRAVSKIKNKKSPGIDNITPEIAKSFVLGNAKECLNMYNNYLKT
FT                 GVFPAEWKTARLALISKSKPGADRAFRPICMLNILGKIFEHIIVARLLPEV
FT                 QLSENQHGFRKGFSTSDAINKVRSAIIKNLNIESKKRPCLAVLTLDIRNAF
FT                 NSLSWNDVHESLLAKNVPSYIIRIILSYLSDRFVTANGLFFKTNSGVPQGS
FT                 ILGPHLWNICYDRIVDLATEITAEKYAYADDLAVLVEGKNRRDLSNKVNAV
FT                 TKEINSELMKSDLSIEPTKTEAEVITKKRNSRKRNVKIKVMDHPITPSLAL
FT                 RYLGIWLDNNGTFNTHVDKICNRVSSVTKVFSCILPNTKGPSFLKRKLITS
FT                 AILSIILYGVNIWAASGVSKMNVKKLTRAIRPIKARLCMAYRTVSSSALDF
FT                 ICGIPPVEILIEERIRLLNKEEDKMIIKAETQKKWMEIWNSTPEKDKWLRQ
FT                 IISDPEGWLNRKHGEPNFYITQAITGHGMFNSFLHKIGVSSTDSCPYCPGI
FT                 FDSPEHTIFNCSHFTAERDEIEVKLGEPLTLTAFQKLICRTKEDWLLVGNY
FT                 LSSILTAKRKFMYEATISDACQPAISGAVRGLS"
XX
SQ   Sequence 4728 BP; 1569 A; 1056 C; 854 G; 1249 T; 0 other;
     atctatcaca ccaagaatta atcgcccttg cattccaatc tcaacgacac attgcagcat        60
     tccaatcgtg tgtacaaatc actgttgata aactgacgcc acctaattgc cgcattcctt       120
     tcaagtgcgg aactccacaa cgaaaaatat gtttacttgc acctgttacc tgcctttttg       180
     ctgacctctg accatcaatc atgacgtcaa catcggaaag aaaagccgca tcggaatcac       240
     ttcgcaatga gttacaatcc ctgtcggaca tcctaagtgt cattccaaat ctcgaactac       300
     ttgcaaatca cgtcccaaat cttgcagaca tttatcgaga ttgtataaat accttttgcc       360
     aaaatctaag aactattatc accaaagaaa tagctgcttc tacatctcac tctgataatc       420
     gaattgttga ttctctaaaa aacttagaat ctaaaattga gacccttgat tcaaaattag       480
     taactttcaa ggacgatata aagaaggaca tcctacaaga cgcccaacta ggacatgcca       540
     aacttcaatc agcggttaac gaaattaaaa tttcccaagc tagtttttcg gaaattgtta       600
     aatcaaacgg aaccaacagc cctcgcaaga aacccaagcg cttagaaaaa agaactgagg       660
     aaacaaaatc gggtgatttc gtggctccca aaatcaaagt tgggaaagcc ctcttttctc       720
     cctcaactga tgtacatatc cttgaggtta aaacaacaga agatcttgaa gcagataatt       780
     tcccctccct gcttaaaaat aacctcaaga gtaaaaattt tcaaattaaa aatttgaaaa       840
     ttaacaaagg aggtgcaaaa atagttgcaa atgacaaagt gcaagcaggg caaatccaag       900
     aactcctcga gaaatcggat aaaatttcgt gtaagcaaat ctctcttcga aacccgcaaa       960
     tcagaataca tgatattgac tttgatctct ctgatgacga gatccttcaa gatatctaca      1020
     acaaaaatga ctttatcaag caaaatgcgc gctttaacaa agacaaattt gactccggtt      1080
     tcaagattgt caaaacgttt caaacgcaca cggaccaaaa atttaacaca agaacaatta      1140
     ttgttgattg cgctcctaca ataaggcata ctctaatgaa tgttcgtcgc gtctttatcg      1200
     gcttttctag ttgtccgtgc tttgatgaca tcgtccctac tagatgttac agatgtttta      1260
     gatatgggca cccagctaag ctttgcagag cacctaatca gctttgtcac tcctgcgcat      1320
     ctcctgatca cgattctgat gcctgcccag taccaacaaa ggaccgaatc cagtgtgtcg      1380
     cttgtattgc cagcggcaaa ctcacgaact taacacactc aattaaagac aaaagatgcc      1440
     cgtgttacca acaagcaatg gaggagaagc ttaaaaagac taactatggc tgggaagaag      1500
     aagaataaga aacaagacgt cagattagca gattcgttct ccatccttct ctgcaacacc      1560
     ggcagagttc ctgattctca cgatgccgcc aagtccttgg ccgccgatgt gggagctgga      1620
     ataattgtcc ttccggaacc aaatatctac aaagcaaata ttgaagggaa tttctgcgat      1680
     ataaacaatg atgttgctgt cttcactacc aaggatctgg taggcggttg caagaactgg      1740
     caaagattca acggtttcgt cagatttgaa tatagtgaca ttatcttata tggctgctac      1800
     tttcatcccg ctcctgcagt atctattccg gaattcaacg aaatcctaaa cagcctcgat      1860
     cataatctta aacaacaatc taaacctgtc atacttgttg gagattttaa ctgccgttcc      1920
     atgttttggg gagacaataa ggaagatcat cgcggcagaa tatttagaga atggattgaa      1980
     gaaaacgatc ttcttgtaca taatgatccg aaatgcagca tccccacttt tgagggcccg      2040
     atgggaagct cctatattga ccttgtcatc acttcttctt cgcttcaaca tcaaatacgc      2100
     aatttaagag ttcacacttc ggagaatttc agtttccatc atactattac tttcagtgta      2160
     aatcccgtaa cgaataatag tctccctact ctttcaaaag ataactctcc ttccggttgg      2220
     tggattaaaa aagagaaaat gcaagacttt agtaaaatcg ccaaagaatc agtaaaaaat      2280
     ctacctgcaa actccatact tacagctatc tcctgtctgc agataatttc cgacgcctgc      2340
     aataaagtat tccaaatcaa gaaaaacttt ggaaggaaaa ctccgctccc ttggtggaac      2400
     tccgatcttc aatgcctaaa aaagaaatgc tcgaccatca gaagagcaat aactagatca      2460
     agagataaag atacccgcaa ccgacttttc gcggagctta aagagaccac ccgaactctc      2520
     cgtattgaaa ttaaaatcgc caagggaaaa atctggaacg actggatttc tgaacttgac      2580
     aacgatattt ggggtagagc ctatcagata aggaaaagaa gacttaaatc tcctcctgga      2640
     catgagaatt cgaccctctc tgaccaggaa gtaattgaag ccgtaaacaa cctttttccg      2700
     actcatgaag actgtcaatg gcctcttttt gtacaggagg acattcaaga catctctatg      2760
     gaagaactta caagagctgt ctctaaaatc aaaaacaaaa agtctccagg aattgataac      2820
     atcactcccg agatagcgaa atcctttgtc ctcggcaatg caaaagaatg tctaaacatg      2880
     tacaataatt atcttaagac aggagtcttc ccagcggagt ggaaaactgc acgcttggca      2940
     ttaatttcaa aatccaagcc aggcgcagac agagcgtttc gtcctatctg catgctgaat      3000
     atccttggta aaatttttga acatataatc gtagccagac tcctacctga agttcagctc      3060
     tcagaaaatc aacatggctt taggaaaggt ttttcgacct cagacgccat taataaagta      3120
     aggagtgcaa taataaaaaa tctcaatatt gagtccaaaa agagaccgtg ccttgccgtt      3180
     cttacactgg atattcgtaa cgcttttaac agcctcagct ggaatgacgt tcatgaatct      3240
     ctgctagcaa aaaacgttcc gtcttatata atcaggataa tattaagtta cctctcggac      3300
     agattcgtca ctgccaacgg cctcttcttt aaaacgaact ctggtgtccc tcagggatcg      3360
     atcctgggtc cccacctatg gaatatatgc tatgacagga ttgtcgatct cgcaactgaa      3420
     attacggcgg aaaagtatgc atacgctgac gatctagctg tgctggtaga gggcaaaaac      3480
     agaagagatc tctcaaataa ggtgaacgcg gtcactaaag aaataaatag tgaactgatg      3540
     aaatcggatc tttctataga accaaccaag actgaagctg aagtcatcac taaaaaaagg      3600
     aactccagga agcggaatgt taaaattaaa gtcatggatc atccaataac tccctctctc      3660
     gcactaagat atcttggcat atggcttgac aacaatggaa ccttcaatac ccatgtggat      3720
     aaaatctgca atagagtatc atctgtcacc aaagttttct cgtgtatact tccaaacact      3780
     aaaggtcctt cctttttgaa aagaaaacta ataacatctg caatactctc cattatattg      3840
     tacggagtga acatttgggc agcttcaggt gtttcaaaga tgaacgtcaa gaagcttaca      3900
     agggctatac gccccatcaa agcacgcctc tgtatggcat acagaactgt atcatcaagt      3960
     gctcttgact ttatctgcgg tattccccct gtagagatcc ttattgagga aagaatcagg      4020
     ctactgaata aagaagaaga caagatgatt atcaaggcag aaacacaaaa aaaatggatg      4080
     gagatttgga actcaacccc cgagaaagac aaatggctaa ggcaaataat cagcgaccca      4140
     gaaggctggt taaacaggaa acatggcgaa cctaatttct atatcactca agcaattact      4200
     ggacatggaa tgtttaacag ttttcttcat aaaattggcg tatcttcaac tgactcctgc      4260
     ccctattgtc ctgggatttt tgattctcct gagcatacta ttttcaactg ctctcatttc      4320
     acagctgaac gggacgaaat tgaggttaaa ttaggcgaac ctctcacatt aaccgctttt      4380
     cagaagttga tctgtcgcac aaaagaagac tggttgctgg ttgggaacta tctcagctca      4440
     atcctgaccg ctaagaggaa atttatgtac gaggccacaa tatccgatgc atgccaaccg      4500
     gcaatttccg gagccgtcag aggactgtcc taaaccttcc tttctagatg gaaggctcag      4560
     aagtacaaca tcccgcctcc tcttcccctt ttgaggcttt ctttattttg atcccctttt      4620
     attatgtagt tctaatatca gttatttaaa aatcatttca tttactgtat gaaataagtt      4680
     tattatgtat ctatattgta acggcaaaca aacaataaaa aaaaaaaa                   4728
//
ID   R1-3_CoFl   repbase;    DNA;    INV; 5554 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5554
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2383-2383 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. It appears inserted into (TAA)n or
CC   (TGA)n microsatellties.
XX
SQ   Sequence 5554 BP; 1667 A; 1255 C; 1594 G; 1038 T; 0 other;
     tccctgggct gaggcagtca gcctatgggg cgcgtgctct ccgggtggcg gatggaggca        60
     agctttccgc gggtgtatgg ctttgaggcg ctgcggcggt cggagcttgt acccgcgggt       120
     ggttggaacg aaataaaata gttctcgtgg accaaaacgc cgaggagaaa acctcgtaaa       180
     aaatctaggg ttggttcccg aatgaaacca aacatgggtg acgctaatga aaacaacgta       240
     ccccaggtgg taacctctca gaggaaatcc gccgccagtt ccgacctggt gaaagcccgg       300
     gtgactggtg ttggcctcac ggattctggg ggaggccaca aaggcgtcca gcacgaaagt       360
     gctatgcttt ctaacatccg aaagcaaatg acaactggtg gttggttaaa cgatcggacc       420
     aacgaaccac aggatataga ccagaatagc cagaatgaac atcagctgac actggctgaa       480
     tcaacggtag tcgctcacct acagaaaacc ttgaacgaca cagaaaagga ggaggaaaaa       540
     gtactaggta ggatgacaga cgtcctacaa agtattaaaa aagcaattga caggcagcca       600
     aacgtcagca gcacagtcaa ggaagccaga gttcacctgg aagaaatctg tgggatctta       660
     aaggacctta aaggccaccg ccagaagact gtgggggaga tgttagtgtt gaggacatct       720
     ctgccagctc gtgtattaga cagcctccga aaaagagagg tagagacgat ggcgctaccg       780
     aggatcagag cgtatcaaaa aaaagcaaga acgacgacga cgacgacgaa ctgtggaggg       840
     aagtcgtaaa caaaagaaag caggcacttg cgaaccgcaa ggagcaagtg gctgctagaa       900
     agaagccggt aggtagcaca ccgactccaa acaaaggtaa gccaggaaag gaaataaaga       960
     agcggagaaa ggcaaaggaa agaaacgagg ccatcctcgt gaaaccagca gaaggaaagt      1020
     catacgcgga agtattggga gcattccgta acgcggtcaa cccgagagac tgcggcgcga      1080
     aagttaccag aatacgcagc acaaaggctg gttgtattct ggtggagctc gccaaaagca      1140
     ccaaagacaa ggagaagctg acgcaggcca tctcactggc tatcggtacc gcaggaaagg      1200
     tacaatcaag gaaacctaga gttaccttgg aggtactaga cttagaggca gtcgccgata      1260
     aagaggaagt tttagcagcc atccaagagg ctgctaaaac cggagaagac ccaggcaaaa      1320
     ttaaagtggc tatgctacca ccaaaccgat ggcaggaaag aatggcgctg gccgaaatgg      1380
     acgaggctgg cgctctgtcc cttttgagga aagggacgat agcagtgggt tggatccggt      1440
     gccgactaag gcgcaggatt atcgtccagc gatgctacag gtgcctggga tatgggcaca      1500
     caagatacga ctgtagaggc ccggaccgat caggcctctg ctggagatgc ggtaaagaca      1560
     atcacagagc taaggactgc aaggccgaac cacgatgtgt cctatgcagt gaatccgcgc      1620
     atggaggaga gagcactaat catgtgcctg gatctggagc gtgcagggcc tttagacagg      1680
     tcctggacag aagaaaaaga aacccgacat aatgcccaga gttctccaag gaaacatgaa      1740
     cggggcaatt gacgcagatg cccttctgcc acaaatatta tgtgaaagaa gggtagacgt      1800
     agcgctcatg agcgagcagt acaggaactt taagccgcct aagtggctta gcaacgcaac      1860
     aaatatgtcg gccatttcag ttcctagacc agacaaaatc cgccaagatg caagcggatc      1920
     ggaaagacat tttgtctggt tgaaaagtgg aggcatcacg tatgtcagct gctacttttc      1980
     accaaacact agtatcgaga aatacaggag aagaataaat tacctcaaag ataccatcag      2040
     ggatggcatg gaaggcgacc tattggtcgc tggagacttc aatgcaagag cagtagaatg      2100
     gggaatgcct gcaacgaact ctaagggccg ggcagtccta gatatggcgg caaggctagg      2160
     actggtcgtt gtaaacgaag aaaggaccac gactttccga aggccgggat ttggcgaatc      2220
     aataccagac attacactgg cttcggagag ccttgcgcca agagtgaaga aatggcaggt      2280
     aatcgaggac gaaaatggca gcaatcacca atatatcgtc ttcgaaatca ccgatacaat      2340
     agacagaaga ggcatagcac gcaaaacagg atggaatgtt aagaagctgg acacagaacg      2400
     actagcggaa aaagttgaga atggcatcgc tgctatccaa aacgacgaac aaaacctgaa      2460
     cacagcagaa ggagtacaga agctcaccga ggcaaccatg caactcctaa aaaccgcatg      2520
     cgaggcctcc atgcccagaa aaaaaagatg gaacggcaaa cgctcaactt actggtggaa      2580
     caaggaaatt gcggaattga ggcgccaatg tctcaaacac agacgcctct atcaaagggc      2640
     cagaaacaga ccagaggccg gacaaaggta ctccgagtac cagcttgcaa gaaagacgat      2700
     gcgagctgct atcaagaaca gcaaaaagca gtgctggcag actctgtgcc aggaagtaaa      2760
     taacgacccc tggggcagag cataccagat agtgatggga aaactgggaa gacttgcacc      2820
     aactgcaaac aaagacgcgg ataccatgag acatatcgtg gatacgctat tcccgacgca      2880
     tccagaactc gaggatcaag cagacttgga gctcatagaa gatgtacctt tatttaccca      2940
     gaaggaactg gagctagcag ccggatcgct taaaaacgga aaagctcctg gaccagatgg      3000
     tataccggca gaagtcatta agacagtggt ggcaaaacac ccacagctgc tcttaaacct      3060
     atacaatgca tgtttgcgaa ggggttgttc ccaaccccct ggaaaaacgc acggctggta      3120
     ctgatcgata aaggcaaggg ggagcctaac tccccgtcat ctttcaggcc gttatgcatg      3180
     ctggatacgc ctggaaagtt atacgaaaag ctgctcaagg cccgtcttct acaggccata      3240
     caaaacgcgg gagacttatc cgacaggcag tacggattca gaaaaggaag gtctaccata      3300
     ggagcagtag aagaagtagt aaaagcagtt caaaacactt gagacgtatg ccatggagcc      3360
     agacccctcg ttcttctggt gaccttggat gtgaagaacg cttttaactc agcaagatgg      3420
     aaggacatgc ttcaagctct gaaatacaca ttcagaacac cagactatct cttgagagta      3480
     ttgagagatt atctcaagga ccgcttcttg acctatacga caacagaagg cgaaacaaag      3540
     aagaaaataa ctgcaggggc attccagggt tccatacttg gacccgatct ctggaacgtg      3600
     tcatacgacg gactactccg acaggaaatg ccagagggga cgttcttggt aggatacgcg      3660
     gacgatgctg ctgtagtgat cgtcgaacgc acgatggaac ttgtccagat acgacttaac      3720
     caggttatgc ggagagtggc tccatggatg gagaaccacg gactcgaagt tgcagcaggg      3780
     aagacggaga tggtactatt gacgagaaaa gagatagata ccatcatccc cctcaaggta      3840
     caagaagaag aagtaatgac gaaggatgcc gtaaaatacc taggggtgac gctggataga      3900
     aagctcacgt tttggagcca ccttaggcaa gcagcagaca gggcggtggc aagagtagcg      3960
     gcattaagcc gaatcatgcc aaacgttaga ggtccaaagc ctgcaaaacg caggctcctt      4020
     atgtctacgg cccagtctat tattttgtac ggggctgaga tatggggaga tgagatgaac      4080
     gtcgaaaaga agagagtgaa aatcggccaa gttcaaagaa taggagcctt gaggatagcc      4140
     tgcgcctatc gcacagtctc agagtctgcg ataatggtga tagcgggcgt aatccccatc      4200
     gacctccttg cgagggaaag acgattaaag caccttacgg agcaggacct aggaagaatg      4260
     gaggccaaga aaaacgcccg ggaaataacc tgggaacgct ggcaacatag atggcaagag      4320
     aaatctagag gtagatggac ggcacgcctg ataaaagatg tcaaggaatg gacagagcgg      4380
     aaacacggga aagtagatta ctaccttacc caattcctct taaatcacgg gtatttccgc      4440
     tcgtacctca acaagatgcg gaaaacacag acggctgctt gcaagtactg tggctacgac      4500
     aaagatgacg cagaacattc gttctttgac tgcatcaagt ggcaagccga acgaaacgtg      4560
     ctgcaggaaa ggatcggaac cttcaatccc gacaacgtca tagataaaat gctacttaac      4620
     gaagaaaggt ggactgcagt agcccaatac atacatacag ttctccgggc caaaaaagag      4680
     gatggttttc tggacgactg agcggaggtg gtgcgagcgt ggatccggtg ccatcggggg      4740
     ggcgtggggt tgtgtttttg tttgctgcgg cgcctggggg ttcagggggg ggtggtggcg      4800
     ggccttgggg gtggggccgc tggggcgtgg ccgcggggcg gttggtgtgc gggatggggg      4860
     cctgcgaggg tgcctaagcg cgtgcagact tccttaaacc gcttcgctct atcaccttcc      4920
     taccgatgag cggctgcggc ctggtggccc atgcttttgg gtgcttcgct tccgcttttt      4980
     tttttttttt ttttttttct gggcttctgg ggtgtggccg cggggcggtc ggtgtgcggt      5040
     atgggggctt gcgtgggtgc ttgaatgcgg gcaagctcct gagaaccgct tcgctatatc      5100
     accgtcctac cgatgagcgg ctgtacctcg gaggcccggg tctctgcccc tctggctctg      5160
     tggtgggtgc gctccttgcg cctttgttgg gggtagccgg gtttgggctc gcgctgggga      5220
     gcatctgcct attattttgc tccatccctc caagtaaaca gagaagagca gcttggatgc      5280
     acgacggaaa atagaaaata tcctagagga cgcaaaagtt acaagacaag ttggcaacga      5340
     aacactaaag gaagcccgaa ccaggggcta agcctccgtg gccctggctt gaagtgtaaa      5400
     tgcgagagca gattccgagc cgggtgtccc aggagaaagg tcttgccagt ttagtgggta      5460
     tggtcataac gagtcccaca caggggaggg ttcgtacacc cttctatcgt gcataaaggc      5520
     attctggacg acctcggaaa aaaaaagaaa aaaa                                  5554
//
ID   R1-3_DAn    repbase;    DNA;    INV; 4782 BP.
XX
AC   .
XX
DT   05-JAN-2012 (Rel. 17.03, Created)
DT   05-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4782
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 400-400 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. It is 3-'flanked by (CA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           249..1655
FT                 /product="R1-3_DAn_1p"
FT                 /translation="MEEKNITTPGGTHNCGNPPAETPAARARILEALSYIP
FT                 NKTAPPAAHLAGVPDTATSETLEEHQAFRRGSKMKRTPPKQMASDHTPKRH
FT                 RDQLSPPCSSQPEKKTKTPQTPIVEMGAILDDLLAKVNDHKVRSINQTMKN
FT                 SFARLKELQELLRDRILTAQNQEERPRCGCSRDEPGCYSPRVEVATQTTPE
FT                 RASFSKVARTKRPAEIPPPLSAKIAGKKDAKLSQTRKSRPDALIITGKAGY
FT                 TYGDVLKLVTRRQDDKLEQVSQSVRRIRRTAKGDLLLELAVAKEANALSLR
FT                 QTLSQVLGETASVRAATEETTLEIRDLDDLTTKDEIVAAFAARLSGQEETI
FT                 RVKSLRPGYSGTQVAIVGAGSNLASKILLEGRIRIGWTRCRVRERTAQRRC
FT                 YKCLGFGHIAAFCKERTDRSDWCLRCGNPGHKVASCSKEAKCFLCAAANKA
FT                 ELAHVAGSRRCPLGKPEVKEQRRA"
FT   CDS           1553..4654
FT                 /product="R1-3_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLPLRCCKQGRACPRSWQQEMPTRQTRSQRTKKGMRF
FT                 IQVNLNHCEVAHSLLEQTLREKRADIALISEPFKKAETHNYILDPAKSAAI
FT                 WAPGAQPESIQRGVGFIRAKVGEFWLYSCYLPPRLTLQQFTHTLDEISHDA
FT                 RFKGNVVIAGDFNAWAEEWGSPRTNARGRALQETLAALDVALLNTGSRNTF
FT                 SRAGYGSIVDLTFCSSGLQRRTKWSLSEDYTASDHKYIVCDIEDRGQTFAR
FT                 ANPLRFKPATLQPEIFAHELRIPDPSGDAERDVQETMAAVQQACRASMGSS
FT                 RGHSRHQEPVPWWSPEIAQARRECLRTRRLQQRARGRPDFEQKSEDFAAKR
FT                 KILMKMIKEAKKRCFLEMCDAAEQDPWGSAYRAVVKKAKQAKPIAPKEAAT
FT                 MKAIVEHLFPTLTCSTPSRARESVGSTPAQTISAQEIVEIAKAIQVGKAPG
FT                 PDGIPDSAIKLAMSTFPERFASVFNGCLREGLFPRRWKTQSLVLLPKPGKP
FT                 PEDPASLRPICLIDHAGKALERCICRRLQAAVIDAGDLSPLQYGFRENRST
FT                 IDAISLVKRIAAKAIEGTRWAGGSKEYCLIATLDIRNAFNTARWDAIVEAL
FT                 NTLRVPPSIIKVVRSYLSDRSIRYETTTGTQEHTVTCGVPQGSVLGPVLWN
FT                 IMYDGVLRLEHPERTHLVGFADDLAVVVVAKSIQEAENSCNAAIACVVEWL
FT                 DRAGLSLAHHKTEAVLVSSRKRVETATISIRGHSVTSTRAIRYLGVMMDTR
FT                 LCFREHFAEANRKAANVARALGKIMMNCRGPKQGRRLLLQTVCSSTMLYAA
FT                 PVWAESAKISTYTKGLNSTYRLCALRVCSGFRSISDDAALVIAGMVPFDLL
FT                 AAERSEIFQALTELSGQVPAATRRRLKLSSRATSIRKWQRRWDESTKGRWT
FT                 HRLVPDLERWLHRKHGEVNFWLTQLISGHGCFRSYLFKFGHDDDPRCPACG
FT                 VEETAEHVVLDCPRFTAPRQRLLGDVQTAELLGRRLLEDAQFWDGLSSFAA
FT                 TTMKELRRLERIRAEARLQAEQPNIAGR"
XX
SQ   Sequence 4782 BP; 1296 A; 1316 C; 1366 G; 803 T; 1 other;
     caccgccgcg gcggtacatg cgtaaaacgg ggctctggcg accgagcagg ggcggtataa        60
     cccccatcgc agattcgagg gatgtcccac ctctctctct cacccaaaat ccacgtagcg       120
     tctgacccat aatgggcggc tgcgtggtct gcgtctgcgc cacattggcc ggcagaaaaa       180
     aatttttacc tggcaggagg tataaactgc aaacctggca gcaggtataa aatgcgacta       240
     ttaaaggaat ggaagaaaaa aacataacta ctccaggtgg cacccacaac tgtggaaatc       300
     cacccgcgga aacacccgcg gccagggcaa ggattctgga ggccctatct tatattccaa       360
     ataagactgc tccaccggcg gcccacttgg ccggtgtccc agatactgct acaagtgaga       420
     ccttagaaga acatcaggcg ttcagacgtg gaagcaagat gaaaagaact cctcccaagc       480
     agatggcgag cgatcacacc ccgaagaggc atcgggacca gttgtccccg ccatgtagct       540
     cccaaccaga gaagaaaacc aaaaccccgc aaacacccat cgttgagatg ggcgcgatcc       600
     tggatgacct tttggcaaag gtaaacgacc ataaggttag aagcattaat caaaccatga       660
     agaattcttt cgcaaggctg aaggagttgc aggagttgct gcgggaccgg atactcaccg       720
     cccagaacca ggaggaaagg cccaggtgcg gatgcagccg ggatgagcca ggctgctaca       780
     gtccacgcgt cgaggtagcg acgcagacca ctccggagcg cgcctcgttt agtaaagtcg       840
     caaggacgaa gcgcccggcg gagatacccc ctccgctcag cgcaaagata gccggtaaaa       900
     aggatgccaa gctatcccag actaggaaga gccgtcctga cgctctcatc ataacgggaa       960
     aggcaggata cacgtacgga gacgtcctta aactcgtcac ccgccggcaa gacgacaagc      1020
     ttgaacaggt aagccaaagc gtcaggagga tcaggcgcac ggctaaaggc gacctcctgc      1080
     tggaactggc ggtagccaag gaagctaatg cgctctcgct aaggcagacg ctttcccagg      1140
     tgctaggtga gacagcgagc gtcagagcgg ccacggaaga gaccactctg gagatacgcg      1200
     acttggacga cctaactact aaggacgaaa tagtcgcagc attcgcagct cgattgagcg      1260
     gacaggagga aaccatcagg gttaagtccc tccgcccagg ctactccgga acccaggtcg      1320
     caattgtggg agcggggtca aacctcgctt ccaagatcct gctagagggc aggatcagga      1380
     taggatggac caggtgcaga gttagggagc gcacggccca gcgtcgctgc tataagtgcc      1440
     tgggctttgg acacatcgcc gcgttctgca aagagcggac ggacagaagc gactggtgcc      1500
     tcagatgcgg taatccaggc cacaaggtgg cttcctgctc gaaggaggca aaatgcttcc      1560
     tctgcgctgc tgcaaacaag gcagagcttg cccacgtagc tggcagcagg agatgcccac      1620
     taggcaaacc agaagtcaaa gaacaaagaa gggcatgagg ttcattcaag tcaacctcaa      1680
     ccactgcgaa gtagctcata gcctactcga gcagacctta agggagaaga gggcagatat      1740
     agccctaatc agcgagccgt ttaaaaaagc cgagacgcat aactacattc tagatccagc      1800
     caaatcggca gcaatctggg cgccaggcgc acaacccgaa agcattcaaa ggggcgttgg      1860
     ttttatccgg gccaaagtgg gcgagttttg gctttatagc tgctacctgc ccccacgcct      1920
     cactcttcag cagttcacac acaccctgga cgagatatcc cacgatgcga ggttcaaagg      1980
     caatgtggtg atagcgggcg attttaacgc ctgggcggag gaatggggct caccccgcac      2040
     caacgccagg ggtcgcgcgc tccaagagac ccttgcggcc ctcgacgttg ccctcctgaa      2100
     cactggctcc cgaaacacgt tcagcagagc agggtacgga tcgatcgtgg acctaacctt      2160
     ttgcagtagc ggactgcagc ggaggacaaa gtggtccctc agtgaggatt acactgcgag      2220
     cgaccataaa tacatagtct gcgacataga ggacagaggg caaacctttg caagagcgaa      2280
     tccactgagg tttaaaccgg cgactctgca acccgaaata ttcgctcatg aactgaggat      2340
     tccagatccc tcgggagacg ccgaacgcga cgtacaggag accatggccg cggttcaaca      2400
     ggcctgccga gccagcatgg ggtctagccg tggccactca aggcaccagg aaccggtgcc      2460
     ctggtggtca ccggagatag cccaagcgcg cagggagtgt ctccgaacca gaaggctgca      2520
     gcaaagagcc agaggaaggc cggacttcga gcagaagagt gaggactttg ctgcwaagcg      2580
     gaagatcctg atgaagatga tcaaagaggc aaagaagagg tgcttcctcg agatgtgcga      2640
     cgcagccgag caggatccgt ggggctcggc ctaccgggca gtggtaaaga aagccaagca      2700
     agcaaagccg atcgccccaa aagaagccgc cacgatgaaa gccattgtgg aacacctctt      2760
     cccgacgctg acctgctcaa caccgagccg agcaagagag tcggtcggct caacgccggc      2820
     ccagacaata agcgcccagg aaatcgtaga aatcgccaag gctatccagg tcggaaaagc      2880
     acccggtcca gatgggatcc cagacagcgc gattaaatta gccatgtcta cgttcccgga      2940
     gcgattcgcc agtgtcttca atggatgctt gagggaagga ttattcccaa gaaggtggaa      3000
     aactcaaagc ctggtcctgc tgccaaaacc aggcaagccg ccggaggacc cggcgtccct      3060
     caggccgatc tgcctcatcg accacgccgg gaaagcccta gagcgctgca tatgccggag      3120
     gctccaggcg gcggtaattg acgcaggaga tctctcccca ttgcaatatg ggttcaggga      3180
     aaaccgctcc accatcgacg caatctccct ggttaagagg atagcagcca aggcaatcga      3240
     ggggaccaga tgggcaggcg gaagcaaaga atactgcctg atcgccacac tagacatcag      3300
     gaatgccttc aacacggcaa ggtgggacgc catagtggag gcgctgaata ccctccgagt      3360
     gccgcctagc atcatcaagg tcgtaaggtc gtaccttagc gatcgttcca tcaggtacga      3420
     gacaaccact ggcacccaag agcatacggt cacctgtggg gtacctcaag gttccgtttt      3480
     aggcccagta ctatggaaca tcatgtacga tggggtccta aggcttgagc acccagaacg      3540
     aactcacctt gtgggctttg cggacgactt agcagtcgtg gtcgtcgcaa agtcaatcca      3600
     ggaagccgaa aattcatgca atgcagccat tgcatgcgtc gtcgagtggc tcgaccgggc      3660
     ggggctaagt ctagcccatc ataagacaga ggctgtcctg gtctcaagca ggaagcgtgt      3720
     cgagacagcc acgataagca tcaggggcca ctcggtcaca tcaaccaggg ccatcaggta      3780
     cctgggtgta atgatggaca cgaggctctg cttcagggag cacttcgcag aagccaacag      3840
     aaaggcagca aacgtcgcca gagccctggg aaaaattatg atgaactgca ggggcccaaa      3900
     gcaaggacgc agattattgc tccagaccgt ctgcagctca acgatgctct acgcagcccc      3960
     cgtgtgggcg gagtcggcca aaataagtac gtacaccaag ggcttaaaca gtacatacag      4020
     actgtgcgcc ctaagggttt gctcgggctt ccggtccatc tcggatgacg cagctctcgt      4080
     catcgcaggc atggtccctt ttgaccttct cgcagcggaa cggtccgaaa tattccaggc      4140
     tctaacagag ctgagcgggc aagtaccggc ggcgacacgc cgtcggctta aactaagctc      4200
     gagagcgacg agcatcagaa agtggcagcg acgctgggac gaatcgacca agggacgctg      4260
     gacccaccga ttggtccccg atctggagag atggctccat agaaaacacg gagaagtaaa      4320
     tttttggctc acgcaactca tcagcggcca cggttgcttc agaagctacc ttttcaaatt      4380
     tggtcatgac gacgacccaa ggtgcccggc atgcggcgta gaagaaactg cggagcacgt      4440
     ggtcttggac tgcccacggt tcacagctcc aaggcaaaga cttcttgggg atgtacagac      4500
     ggcggaactc ctcggaagaa ggctgctgga ggacgcccag ttctgggatg gtctgagcag      4560
     ctttgcagct acaaccatga aggagctgag acggctggaa aggatccggg cggaggctag      4620
     gctccaagcc gagcaaccaa atattgcggg gcgctaatct tacgccaacc ctagccctgc      4680
     gaagcaaagc ctaccggcat ttccgcagga gcaggtttag gagacaccac tgttagttta      4740
     agttgtaaat aaagaaacga ttaaaaaaaa aaaaaaaaaa aa                         4782
//
ID   R1-3_DBp    repbase;    DNA;    INV; 4731 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4731
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 728-728 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated. ~90% identical to
CC   R1-1_DEu from Drosophila eugracilis.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           216..1568
FT                 /product="R1-3_DBp_1p"
FT                 /translation="MPTGGVPAGEDKETPKRTREQSSPSEPQRSTPAKRTR
FT                 ATTEQPCSSMLAELEAILEDIIQQTHEKQVRSINLKMKRMFCRMKELQEGL
FT                 SGILSNPSDAGTTAAAAEVVCSRCGQADTAKTDQRTQTLLTRRKEAAAQTD
FT                 PWRRLSQDSAAPPPRGAPLASAKAPKIRAREGPTXRTSSHPDXRTAGVGGQ
FT                 STAAXTAAPGPGWETATRRKPRTSTRPDAXVVEAKGXKYSEVLALVTRRQD
FT                 GQLKEFSQNVHKVRRTATGNLLLELSKNRVDSTDAMRENLEKVLQGAAEVR
FT                 ALSEDSKMKYXEIRDLDPLATEGDIRLALAEQFEVDGKSATLRSLRARSRD
FT                 TQTAIIGLPSKIATAVVSKGRVRIGWTVCRIRERQSQPRCYRCLEVGHIAS
FT                 QCRSPTDRSGCCIRCGKSGHKIANCPNESTCYVCASKGEKEAKHLAGSRRC
FT                 PHSNGA"
FT   CDS           1585..4569
FT                 /product="R1-3_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQVIQLNLNHCRAAQDLLRHTVGEVNADIAILSEPYS
FT                 VGPGEEWATNNQGKAAIWICNSSAEGPSQVRRGEGFVRIQWGGTWVYSCYL
FT                 APSLSLDAYCKALEELAVDARGKHPVLIAGDFNAWAQEWGSTTTNARGRAL
FT                 LEILAPLDLALLNEGNQETFNRAGAGSIIDLTFVSSSLARTSEWRIADIYT
FT                 ASDHEAILCSLGTSRATSXIPPCGKAXRQDTLDVQQLANHVRRAELDLHAT
FT                 ANDSAAALATALDAACNACMKARTTFARHHKPAPWWTSHISALRKECLRAR
FT                 RSLQRARGTDAQEQRRLEFKAARKTLKKAIRDSKRELFLKLCDEAEHDPWG
FT                 QAYKIVTKKVRAGSQPPSDPVALSAIIDVLFPSCQGEGTRPAIEDXEEESV
FT                 EAVTAEEVLAAARNLAPNKAPGPDAVPNRALKVALAQIPEKIAAVYNQCLL
FT                 EGSFPKVWKKQRLLLLTKPGKPPGEAASYRPICLLDTVGKVLEKILATRLQ
FT                 AAISREGGLAEEQYGFRKGRSTVDAIMRVKTLAASAIQGTRWEGGTKQYCL
FT                 VTTLDVKNAFNTASWSRTLEALKELRIPEYLLKMVDSYLSDRILLYDTREG
FT                 QKERVVSAGVPQGSVLGPLLWNTMYDGVLRLPMDEGTTIVGFADDIAIVVV
FT                 AKTVRGVETQTNSAVASVEAWMSRAGLQLAPQKTEAVLISSRKKVETATVH
FT                 VGGVAVTSGRAXKYLGVWLDTRLSFREHLEYAHRRASETTRALSRMLLNIR
FT                 GPRQERRKLITSVVSSQILYAAPVWAEAMGVRSYARGIEADYRLCALRTSC
FT                 AFRTVSDDAALVIAGLIPLXELVRERKELANMAQDSPSSASDRKREARATS
FT                 LANWQRRWEASSKGRWTFRLIPDVGEWTGRKHGQVDFYLTQALSGHGCFRS
FT                 YLKRFGHESEDCCPSCGSGVTEDSLHVLFECRRFEEDRLTLEEILEEAFTP
FT                 SSMVPQMLQTPVKWEAIAVFVAKMMTELRALERARNGREE"
XX
SQ   Sequence 4731 BP; 1226 A; 1269 C; 1490 G; 723 T; 23 other;
     aatactccag gtggcaacca ctcaagtgga aatcmacccg tggggaaamc cacggtcggg        60
     gcacggatkc tggaggcccc amacamcatc caacccacga ctgacgaggc ggtggctagc       120
     ttggccgcca acaaagtgcg gagcaatcct cagcgtttct gagcagctcc aagatcctgc       180
     ggtcacccat tctgcaggca acgcggagca cagcgatgcc aacaggcggt gttcccgcgg       240
     gtgaagacaa ggagacccca aaaaggacga gggaacaatc cagtccatca gagccccaga       300
     gatcgactcc agccaagagg acgagagcga caacagagca gccttgctcc agcatgctgg       360
     cggagctaga ggcgatattg gaggacataa tccagcaaac gcacgagaaa caggtgagga       420
     gcatcaacct caaaatgaag aggatgttct gcaggatgaa ggagctacag gaaggcctta       480
     gcgggatcct ctccaacccc agcgatgcag ggacgacggc ggcagckgcg gaggtcgtct       540
     gttcgaggtg cggtcaggca gatactgcga agacggacca aagaacgcaa accctcctaa       600
     cgcggcgcaa ggaagcggca gcccagactg acccgtggcg acggcttagc caggacagcg       660
     cggctccacc accaagaggc gcgccactgg cctcggcgaa ggccccgaaa atccgggcac       720
     gagaagggcc caccmagcgg acttcaagcc acccggacsc caggaccgcg ggagtagggg       780
     gccagagcac ggccgcacwg acmgcagcgc caggaccwgg atgggagaca gcaacacgga       840
     ggaagccaag gacgtccacc cgacccgacg cgmtagtcgt ggaagccaag ggaakgaagt       900
     atagcgaggt gcttgccttg gtcactagac ggcaggacgg ccagctgaag gaattcagcc       960
     aaaatgtcca caaggtgcgc cgcaccgcaa ctgggaacct tctgctggag ctgtcgaaaa      1020
     accgtgtgga tagcacggac gccatgaggg agaacctcga aaaggtgcta caaggagctg      1080
     ctgaagtgcg agcgctgtcc gaggacagca agatgaagta tmtagagatc agggacctcg      1140
     acccgctagc gacggaaggg gacattcggc ttgctctggc cgagcagttc gaagtggatg      1200
     gaaagtcggc cacgttaagg agccttcggg caagatccag ggacacacag accgccatca      1260
     tcggtctgcc cagtaaaatt gcgaccgcag ttgtgagcaa ggggagagtg aggatcggat      1320
     ggaccgtgtg ccggatccgg gagaggcaga gccagccgag gtgctaccga tgcctggaag      1380
     ttggccacat tgcgagccag tgccgaagcc ccaccgatag gagcggatgc tgcatccgct      1440
     gtggcaaaag cgggcataaa atcgccaact gcccaaacga gagcacctgc tacgtttgcg      1500
     cgtcaaaagg cgagaaggag gcaaaacacc tcgcaggaag tcgacggtgt ccgcactcca      1560
     atggagcgta aaagataggg caggatgcaa gtgatccagc tcaatctgaa tcactgcaga      1620
     gcggcgcagg accttctgcg acacaccgta ggcgaggtaa atgctgacat agccattctc      1680
     agcgagccgt acagcgtcgg nccaggcgag gagtgggcga ccaacaacca gggcaaggcg      1740
     gccatctgga tctgcaacag ttccgcggaa gggccaagtc aagtgaggag aggcgaaggg      1800
     ttcgtgagaa tccagtgggg aggtacatgg gtgtatagct gctacctagc cccaagcctc      1860
     tccctcgatg cttactgcaa ggctctagag gagctagcgg tagatgccag aggcaaacac      1920
     ccagtgctaa tagcgggtga ttttaacgcg tgggcacagg agtgggggag taccaccacg      1980
     aatgctagag gcagagcctt gctggagatc ctagcacccc tggacctggc ccttctcaac      2040
     gagggcaacc aggaaacctt caatagagca ggcgccggtt ccattattga cctgaccttc      2100
     gtcagcagta gtttggcacg gacctcagag tggagaatcg ccgacatcta cacggccagt      2160
     gaccacgagg ccatactctg ctcgctcgga accagccggg cgacctcgmg cattcccccc      2220
     tgcggcaagg cgtwtcggca ggacacgcta gacgtccaac aattggcaaa ccacgtgcgg      2280
     agggcggagc tcgatctcca cgctacagca aacgactcgg cggcggcgct tgctacggcc      2340
     cttgatgcgg cctgtaacgc atgcatgaag gcgcgcacga cctttgctcg gcatcataaa      2400
     ccagctccgt ggtggacaag ccatatctcg gctcttcgta aggagtgcct aagggctaga      2460
     agatccctgc agcgagctcg wggcactgac gcgcaggagc aaagacgcct tgaattcaag      2520
     gcagcgagga aaacgctgaa aaaggccata cgggacagta agcgcgagct gttcctcaag      2580
     ttatgcgacg aagcggaaca cgacccatgg ggacaggcgt ataaaatcgt aacaaaaaag      2640
     gtcagggcgg ggagccagcc cccttcagac ccggtcgcac tgagcgccat aatagacgtm      2700
     ctattcccaa gctgtcaagg agaaggaaca cgcccggcta ttgaggackt cgaagaagag      2760
     tcggtggaag cggtcacagc agaggaggtg ctagcggccg cacgaaatct agcccccaac      2820
     aaagctcccg gcccggacgc ggtgccaaac cgagcactca aggtggccct ggcccaaata      2880
     ccagaaaaga ttgcagcagt ctacaatcaa tgcttgctgg aaggatcctt cccgaaggtg      2940
     tggaagaagc agaggctcct tctgctaacg aagcccggta agccacccgg tgaggccgcg      3000
     tcttaccgac ccatctgcct ccttgacacc gtaggcaagg tattggagaa gatcctggcc      3060
     acgagactcc aggcggcgat aagccgggag ggcggactgg cggaggagca gtacgggttc      3120
     cggaaaggga ggtcaacggt agatgccatc atgagggtga agaccctggc agcaagcgcc      3180
     atccaaggca ccagatggga ggggggaacc aaacaatact gtctggttac caccctggac      3240
     gtgaagaacg cattcaacac ggcgagctgg tcgcggactc tcgaagccct gaaggagctt      3300
     aggatcccgg agtacctgtt gaagatggtg gatagctacc tgagtgacag aatactccta      3360
     tacgacacgc gggaaggcca gaaagagcga gtggtctccg ccggagtgcc gcagggctct      3420
     gtgctaggcc cgctcttgtg gaatacgatg tatgatggag tactccgatt acccatggat      3480
     gagggtacta ccatcgttgg attcgccgac gacatagcca tagtggtggt ggcgaagact      3540
     gttcgcgggg tggaaaccca aacaaactcc gcggtggcga gcgtggaggc atggatgtct      3600
     agggcaggcc ttcagctcgc cccacaaaag acggaagcgg tgctaatttc gagccggaag      3660
     aaggtmgaaa cagcgacagt tcatgtagga ggagtggccg ttacctcggg gagagctmta      3720
     aaatacctgg gggtctggct cgacacaagg ctctcgttcc gggagcacct cgagtacgcc      3780
     cacaggaggg cgagcgagac gacgagggcc ctctcgcgga tgctcctcaa tatcagaggc      3840
     ccgaggcagg aaaggcgcaa gctcatcact agcgtggtga gctcccaaat cctgtacgct      3900
     gccccagtgt gggccgaggc gatgggagta aggtcctacg cacgaggaat cgaggcagac      3960
     taccgcctat gcgcgctacg gacgtcctgc gccttcagga cggtgtcgga cgacgcggcc      4020
     ctagtgatcg caggtctgat acccctasga gagctggtcc gagagaggaa ggagctggcc      4080
     aacatggctc aggacagccc ctcatcggcg tcggacagga agagggaagc gagagccact      4140
     agcttggcaa actggcaacg acgatgggag gcatcttcca agggacgttg gacgtttcga      4200
     ctcattccgg acgtgggaga gtggaccgga aggaagcatg gccaggtaga cttttacctc      4260
     actcaggccc tcagtgggca tgggtgcttc agaagctacc tgaagcgttt tggccatgaa      4320
     agtgaggact gctgcccgtc gtgcggcagt ggagtcacag aggactcact ccacgtcctc      4380
     ttcgagtgca ggcgatttga ggaggatcgc ctaaccctgg aggagatcct ggaagaggcc      4440
     tttacaccaa gcagtatggt gcctcaaatg ctccagacgc cggtcaaatg ggaagcgata      4500
     gccgtatttg tggccaagat gatgacggag ctgagagccc tggagagggc gcgtaatggg      4560
     cgggaggagt agggcgccag aggtgtgcga agcattgctt cacggccgta ccgcacaact      4620
     taggcccatg ctcctacagc ccagtcgggg aacaacaatg tatagtaggc atataagata      4680
     gttttaataa taaacaacga aatataaaaa aaaaaaaaaa aaaaaaaaaa a               4731
//
ID   R1-3_DEl    repbase;    DNA;    INV; 4086 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-4086
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 566-566 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. It is followed by TGTCCCTATCTACT,
CC   which is the same as the TSD sequence of R1.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..666,615..2069,2073..2381,2140..2607,
FT                 2457..2819,2734..3039,3039..3368,3311..3559)
FT                 /product="R1-3_DEl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="EVRELKRGGAIIRTPSQVELTKVVASTKFAEVGLKVA
FT                 KNPAEKARVTVFDVDTSVGPEEFMLELKEKNFEDLPLKDFQKAVHLATKPW
FT                 SAADGATVNVALEVNDEALAVLDVGRVYIKWFSYRCRSLVRTYACHRCVGF
FT                 DHKVQNKENVCRQCGESGHTAAKCTKPVDCRNCRHKGLPSGHYMLSGACPI
FT                 XGAVLARVQASTNFSLIQAIVVGGGRSWRALRPHPSNCGRGRPIVAGPTLI
FT                 QEPYVDYRGEIVGFPADMRVFKDTNSKAAIAVGDPDVICMPIAQLTTTLGV
FT                 CVRVTGRYGTIFLCSVYCRFGADINPYIGYLDEVLLLASRNPTILGLDANA
FT                 VSPMWFSKIPDSTGTSENRRRGQLLAEWVLGNRAGVLNVASQEYTFDNYTE
FT                 PRRQSDIDVTFVNDAACTWATYDWRVIPWESSDHNIINVEITPDPSSAIEN
FT                 LVLVPQWKLSRANWRRFGIGIRSAIEGIQDLESPLDDRISALRTIVQEVCD
FT                 GVLGRRRPRARGKVIWWTPELNTKRQEVRRLRRRLQEARRGGTGDAGQLAA
FT                 ELRLASGQYKKLILAVKEKNWRDFVGQNRDDPWGHVYRICRGRKKTTEIGC
FT                 LRSGGELVVTWHDSASVLLRNFFPVAEMIAPIAIPDVAPPALEAFEVDACV
FT                 ARLKSRRSPGMDGITGGIVKEVWRAIPQYLTELYSRCLSEGHFPTGGSFWK
FT                 GLRIMVSIPVRRNMFSESSWILKVPLTMLNGARARPTRGVGCREIACGTAF
FT                 SPVDAQDRSRYEAATVPVTRGCPQGSISGHTGTSDGCAASALGDASWLKCV
FT                 CGRLTSPCMERALDRLVAWAVEKSLVEQLFLRSTRKIVADMKQPQSLSHGA
FT                 ARKGLSVVILEPLMDVLLQRLETHRGLSAYADDLLLLVEGRSRDDIERKGT
FT                 ELMEIVEAWGAEVGVSVSTSKTAIMLLKGKLDPRRPPTDGLLEPACRTYRN
FT                 TGTLVSQSANGSWSECVDQQDGNHVAQRQTRPEETPYGRLAGASLPYVQEY
FT                 RYLGITIGERLSFLPHIEVCETDWRVSRQHWHVYCGLTWDSAPGEAAITPA
FT                 MTPACYLVPRFGTTRRVGAKPETVSYRAKGHLRAIWCLGLVQQGESGQSPR
FT                 PSLIVPKVNPFRMPTGMPHSVHSGTAGACWAPPMDLDAHRSAIKFKLRKGV
FT                 PLSDSDWLSGQDLSELDWNSKMARRRTSAKMSGSSDGTVRCTGRVTHKFFP
FT                 EAAFVYNRKDFGFTIRAGFLLTGHGSLNAFLLGRSLSDTPACSCGGEPEDW
FT                 LHILCVCPLRGLASLGGFRRRAGTRQLEVTRPLKGCVSASCRNKAAGSDET
FT                 PERMRLLGTFAQAVFERRRMDPSRDSPGDQGQDWRLEFADEAFRRRRGLCC
FT                 VVSGEEYCHSLSLLVVGGD"
XX
SQ   Sequence 4086 BP; 945 A; 986 C; 1258 G; 894 T; 3 other;
     gaggtgcgag aacttaagcg aggtggtgcg ataattcgca ccccatcgca ggtggagcta        60
     accaaagtgg ttgcctccac taagttcgcc gaggtgggcc ttaaagtggc gaagaacccc       120
     gcggagaaag cgagggtaac ggtgtttgac gtagacacct cagtgggtcc tgaggagttt       180
     atgttggagc ttaaggagaa gaattttgag gacctacctc taaaggattt tcaaaaggca       240
     gtgcacctgg cgacaaagcc ctggtctgca gccgacggtg ccacwgtcaa tgtggcactg       300
     gaagtgaacg acgaggcgct ggcggtgctt gatgtaggca gagtctatat caagtggttc       360
     tcataccgat gccgatcgct ggtccgcacc tatgcttgcc ataggtgtgt tggatttgac       420
     cacaaggtgc agaacaagga gaacgtctgc cgtcagtgcg gagagagcgg ccacaccgca       480
     gcgaagtgca ccaaaccggt ggactgccgg aactgccgcc ataaggggct gccctcgggg       540
     cattatatgc tctcgggtgc atgcccgata wacggcgcgg tgctagcgag ggtgcaggct       600
     agcactaatt ttagcctcat ccaagcaatt gtggtcgggg gcggccgatc gtggcgggcc       660
     ctacgctgat ccaggagccc tacgtggact acagaggaga aatcgtcgga tttcctgctg       720
     acatgcgtgt ctttaaggac accaacagca aggctgccat cgctgttggc gacccagatg       780
     tcatmtgcat gccgattgca caactgacaa cgacgctcgg agtatgcgtg agagtcacgg       840
     gaagatatgg cacaatcttc ttgtgctccg tatactgccg ttttggagcg gatatcaatc       900
     cctacatcgg atacctggat gaggttctgc tgctggccag caggaacccc actatcctcg       960
     gcctagatgc gaacgcagta tcccctatgt ggttcagcaa aatcccggat agcactggga      1020
     ctagcgagaa tcgcagaagg ggtcagctgc tagcagagtg ggtccttgga aatcgagccg      1080
     gagtgctcaa cgttgccagc caggagtata cgtttgataa ttacactgag cccaggcgcc      1140
     agagtgatat cgacgtgacc ttcgtcaatg atgcagcctg tacatgggct acgtacgact      1200
     ggagagtgat cccgtgggaa tcgagtgatc acaacattat caatgttgag attacacccg      1260
     acccaagcag tgcaattgag aacttagttc ttgtaccgca gtggaaactc tccagggcga      1320
     attggcgaag attcggaata ggaatcagga gtgcaatcga gggaatacag gacttggaat      1380
     cgccgttgga cgaccggatt tctgccctac gcactattgt acaggaagtg tgcgatggag      1440
     tgttaggacg caggagaccg cgagctaggg gaaaggtaat atggtggaca cctgaactga      1500
     ataccaagcg ccaagaggtc aggagactga ggcgaaggct acaggaagcg cgccggggtg      1560
     gcaccggtga cgctgggcaa cttgctgctg aactgaggct tgcctcagga cagtacaaga      1620
     agctcatcct ggcggtcaag gagaaaaact ggcgagactt cgtgggacaa aacagagatg      1680
     acccatgggg gcacgtctac cgtatctgcc gaggtcgcaa gaagacaacc gagattgggt      1740
     gccttcgttc gggtggtgag cttgtcgtaa catggcacga cagcgcaagt gtgcttcttc      1800
     gcaacttttt cccagttgcg gagatgatag cacctatcgc catcccggac gttgccccac      1860
     cggccctcga agcattcgag gttgatgcat gcgtcgccag gctgaagagc agacgctctc      1920
     ccggcatgga cggcatcacg ggcgggattg tcaaagaggt atggcgtgct atccctcagt      1980
     acctaacgga gctgtactct cgctgccttt cggaaggaca ctttcctacc ggtggctctt      2040
     tttggaaagg tctgaggatc atggtatcgt aaattccagt gcggcgaaac atgttctcgg      2100
     aatcttcgtg gattttaaag gtgcctttga ccatgttgaa tggagcgcgc gctcgaccga      2160
     ctcgtggcgt gggctgtcga gaaatcgctt gtggaacagc tttttctccg gtcgacgcgc      2220
     aagatcgtag cagatatgaa gcagccacag tccctgtcac acggggctgc ccgcaagggt      2280
     ctatcagtgg tcatactgga acctctgatg gatgtgctgc ttcagcgctt ggagacgcat      2340
     cgtggcttaa gtgcgtatgc ggacgactta cttctccttg ttgaagggag gagtcgtgat      2400
     gacatcgagc ggaagggaac ggagctgatg gaaatcgtcg aagcctgggg agctgaagtt      2460
     ggagtgagtg tgtcgaccag caagacggca atcatgttgc tcaaaggcaa actagacccg      2520
     aggagacccc ctacggacgg cttgctggag ccagcctgcc gtacgtacag gaataccggt      2580
     accttggtat cacaatcggc gaacggttga gtttccttcc tcacatagag gtttgcgaga      2640
     ccgactggcg ggtgtcgcgg cagcactggc acgtgtactg cgggttgact tgggactcag      2700
     cccccggcga ggcggctatt acgccggcta tgacacctgc gtgctatttg gtgcctcggt      2760
     ttggtacaac aaggcgagtc ggggcaaagc ccgagaccgt ctcttatcgt gccaaaggtt      2820
     aatcctttta ggatgcctac cggtatgccg cacagtgtcc acagtggcac tgcaggtgct      2880
     tgctgggctc ctccaatgga tttggatgca caccgaagtg caatcaaatt caaactcagg      2940
     aaaggagtgc ccctgagtga cagcgactgg ctttccggac aggacctttc agaattggac      3000
     tggaacagca aaatggcgcg tagacgaacg tctgctaaat gagtggcagc tcagatggga      3060
     cggtgcgatg caccggtcgt gtgacgcaca aattcttccc agaggcagcg ttcgtctaca      3120
     ataggaaaga ctttggtttt accataagag ccggattttt gctgacagga catggatcgc      3180
     tgaacgcatt tctgctgggg agaagtctca gcgacacacc agcatgctca tgcggtgggg      3240
     agccggaaga ctggctgcac attttatgtg tttgcccctt acgcggactt gcgtcacttg      3300
     gaggctttag gcgtcgtgca ggaacaaggc agctggaagt gacgagaccc ctgaaaggat      3360
     gcgtctccta ggaacgttcg cacaagcagt cttcgagagg cggaggatgg atccatcgag      3420
     ggatagcccc ggagatcaag gacaggactg gcggctcgaa tttgcggatg aggcgttccg      3480
     caggagaagg ggcttgtgct gtgtggttag cggcgaagaa tactgccaca gcttgtcatt      3540
     gcttgtcgta ggaggcgact aatatggcac aggggcaccc tatccgggct tgtcggagcc      3600
     aaagggggag ggcctaccga gcccttaatt tcggtaccac gggttgggca gttccaaggc      3660
     tgcccattga ggtcggcccc cttgtgggag tatcgtggtg gctgtggttg acacccatat      3720
     cgcgggtaga actctcgggt tcgacgtgga gttgcgttat acaactcggg tgctgtgacc      3780
     catagagcag tagagatttt agatgatctc gcccctcagc aagggggagt gtttgcccga      3840
     caagaagcac tcgaattgac accggggtag ttgctatgta catagctata gcttctagtc      3900
     cggggcgttg gtctggcgct taatctagac acatgcacta tatactcact tgcgggtgtg      3960
     ttatgtactc acttgtgggt gcatgatgta tcaacttgtg ggtatattag agtgccgtgg      4020
     ttgtaatccc ttcagtgtgg aacacgccac gtaaaataag tttcggagag atctgattta      4080
     cacacc                                                                 4086
//
ID   R1-3_DEu    repbase;    DNA;    INV; 2876 BP.
XX
AC   .
XX
DT   31-MAY-2012 (Rel. 17.06, Created)
DT   31-MAY-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila eugracilis: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-2876
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila eugracilis
RT   genome.";
RL   Repbase Reports 12(6), 960-960 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment. ~91% identical to R1A_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2876 BP; 600 A; 724 C; 917 G; 632 T; 3 other;
     cgcgcgcagt tgagagcata gctcctctgc cgtcctgaaa catctccaat gctcgctggc        60
     agttgttcga acaggagatg gtaaaacggt tagctgatat tccggaagac ttctcgcagt       120
     cgccgctgga ccagcaagta ttgaccctgc gcggcatggt ccacgataag tgtgacctcg       180
     cgctagggag aaagacgccg agatcgccta ggaggagaaa gcgaggctgg tggaccgcca       240
     gcctgagcgc ggagagacaa gaagtacgga gacttcgccg ccggcttcag aacgccagcc       300
     gtcgtggtga ccatgatgcg gctgggcttc ttgtggtcgc gctgaggcaa gcctcagccg       360
     attacaagaa gctcatcctg agggcgaagg aggagagctg gaagcggttt gtaggggata       420
     acgcacacga tccctggggg cgcgtctaca agatctgccg aggacgcaaa aagtgcacgg       480
     agattgggtg cctccgcgtt gatggcgagc tggtcaccga ttggggtgac tgtgcgcgcg       540
     tgctccttcg taactttttc ccagttgcga agtcgaatgc accgattgcc ggagcggagg       600
     aggtcccacc ggccctcgag gaagaagagg ttgatgcttg tgtcgccagg ttgaagagca       660
     gacgctctcc tggcatggac ggcatcaatg gcactatctg caaagcggtg tggcgcgcca       720
     tacctcagca tstaacggcg agtagtggcg ctactcaagg ggcccgacaa ggataggtgc       780
     gaaccctcgt cgtaccgtgg gatatgcctg ctgccagtat ttggcaaggt gcttgaggcc       840
     atcatggtta atcgtgtgag agaagttctt ccggaasgat gcagatggca gttcggattt       900
     cgccaagggc gaagcgtcga cgacgcttgg agacacgtga agagctgtgt cgccgccagc       960
     ccggcgcgat acgtgctcgg gatcttcgtg gacttcaagg gagcgtttga caacgtcgag      1020
     tggagtgctg cactgcgccg actcgccgac ttgggatgcc gagagttgag cttgtggcag      1080
     agcttcttct cagacagaag agcagagatc cgaagcagtt ctggaactgt gaacgttcca      1140
     gtaactagag gttgcccgca gggatccatc agtggcccat ttatttggga tctgctgatg      1200
     gatgttctgc tccggcgtct ccagtcatac tgtgctttaa gcgcgtatgc ggatgacctg      1260
     ctccttcttg ttgaaggcaa ctcccgagcc gtgctggagg acaaaggagc gcaactgatg      1320
     tccatcgttg aatagtgggg tacggaaatc ggtgtaaccg tttccaccag caagacggtg      1380
     attatgctgc tgaagggtgc cctcgcgcgc ccccgttggt gagatctgca ggagcgaatc      1440
     tcccatatgt tcgcagctgt cggtaccttg gcatcacggt cagtgagcgc atgaacttct      1500
     tcatgcacat cgcgtcgctg cgtcagcgaa tgaccggagt cgtgggagca ttggcgcgtg      1560
     tgctacgagc cgactgggga ttcagtcctc gggccaggcg aaccatctat gccggactca      1620
     tggagccttg tgcactgttt ggtgcctcgg tatggtatgt cgtgacgacg aggcaagttg      1680
     tagccaggag gcgacttctt gcctgccaga ggctgatcct tttaggatgc ctcccggtat      1740
     gccgcacagt gtcaccaacc ctggcgctgc aggtacttgc tggagccccg cctcttgact      1800
     tggctgctat gaaagtagca gtcaagtaca agttgaagcg tggatacccg ttggaggagg      1860
     acgactggct ctatggcgag gacatttcag gtctgagctg gacacaacga gttgcgcggg      1920
     taaacgaatg cctcctgtcg gactggcaga gcagatggga tgatggtgat tcgctcggtc      1980
     gggtgactca caagttcatc ccggatgcag ggttcgtcta ccggaatccg gacttcggtt      2040
     tctcgatgcg cgcaggattc ttgatgacag ggcacgggtc gttcaatgca tttctgcata      2100
     gcagaggcct cagcgattcc cccgcatgct catgcggcga tccaaatgag gactgggagc      2160
     acatcctgtg tgcttgcccc ctttatgcag acttgcgaga cctcggtgga ctcggtttgc      2220
     agcacgttgg cggaagctgg acatttggaa ggattctgga gagcagcgac aggaccasga      2280
     gactcgcgga gtttgccgag gaggtgtttc ggaggaggag gggcctttaa ggtcaatttt      2340
     ccgtgccgtg tggttggcgg cctagaattc tgccacagtt cgccatagct tgtcgtagga      2400
     ggcgactaac atggcagggc cccccatccg agcttgtcgg agctaaaggg gtgggtcacc      2460
     gagcccacaa acttcggtac cacgggttgg atagtgtcca agcactacca gttggccccc      2520
     tagtgggagt atcgtggtgg ctgtggttga tacctaaatc gcgggtagaa tctcctgatt      2580
     cgacgtggag ttgcgttata caactcgggt gctgcgaccc atagagcggc agaggtgata      2640
     gatacacgtc gcctcttatc cagagggagt atgttgcccg gcaagcgcat attcgacagg      2700
     taccagggtg gtcgctatgt acatagctat agcttctagt ctggggcgct ggcaggcgta      2760
     ccatccttgc ccatgcacta tatgcctact tgtaggtata ttcgagtgcc gtggttgtaa      2820
     tcccttcagt gtggaacacg ccacgtaaaa taagatcgga gagatccgag acacgc          2876
//
ID   R1-3_DF     repbase;    DNA;    INV; 5108 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-5108
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 987-987 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           2005..4959
FT                 /product="R1-3_DF_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIRIYQLNMNHCEAAQDLLAQSLRENRSDIAILSEPY
FT                 RIKPSNTWAGDKLRKAATWSCGQHATPLTDIMSEKGFIRAKVGWLYVYSCY
FT                 LPPSLSLEEFTGILDLLVRDARDKSPCLIAGDFNAWATDWGSVSTNPKGRA
FT                 VLDAFAALEVTLLNNGRENTFRRGNAGSAIDLTFVSSTLVPRTSWNVSKCY
FT                 THSDHQAVITVIHSRALAPVPTRVSRYKPEXLDKDVFEYMLQGLHPSGTAT
FT                 DMASQVMAHVTRACNASMTKTGNGPNRQPVYWWNDDIAKARKECFRARRAY
FT                 QRALRRGVTHAAAQQXTFKEKRRALKALIKXSKKRLFLELCDQADSDPWGT
FT                 AYKLAMKRLHAFRPASPKCPDLLXKTVVHLFPQQPPRXVDRMAXANWTETT
FT                 PERVTEEEVLIAARRIKPGKAPGPDGIPSAVMRKAIELQPSYFATLFSRCI
FT                 SEGVFPKCWKRQNLVLIPKGSKAPEDPSGYRPICLLDTAGKALERVICSRL
FT                 EASISSXGGLSDSQFGFRKARSTKQAIQEVVNLAARAIEGKRWRWGTKEYC
FT                 LVVTLDVKNAFNSASWARIXECLVNKGIDPTLTRIIGSYLSQRVLRYETNX
FT                 GXKTYRVTGGVPQGSVLGPTLWNLMYDGILRLXLPSGVKMIGFADDVAIVA
FT                 VAKHTHELEAITNEAIRQAXEWLANAGLSLAEHKTEAVLISSRKVVESVTL
FT                 TVGGTAIRSRPHLRYLGIILDHRLSFKEHLKYTAEKASTACSALARIMPNT
FT                 RGPKELRRRLLSSVVRSITTYAAPIWADATANKTYTKEVRAVYRTCALRIV
FT                 SAFRTVSGDAAEVLAGMMPFDVGIRELACAHEVSPEENRKRSLAEWQRRWQ
FT                 CSVRGRWTHKLIPRVEAWVDRAHGQVNYYLTQFLSGHGCFRAYLHRFGHAE
FT                 DPSCPRCGTSCPEDAEHVIFTCPRFSRQRDELQRQCGEPLAPENLVANMLA
FT                 SVSNWEAAAKMANSVMKELRREEQANRRSL"
XX
SQ   Sequence 5108 BP; 1424 A; 1381 C; 1439 G; 819 T; 45 other;
     tcctctctgg tgcagttaaa gcagctcgta acctccgaca aggcgtcagg tatccccgga        60
     cagaccatcc acactgtgat gcgtctagga aatacgagaa ggcgactaag gccgagacca       120
     gtaaggccct aggactgaaa actggacccc cgatatggaa cgacgaccca tgggctgacg       180
     atagcagtat tctagcacct cagtaagcgg agtgaaatct tgctgaaatg gctgctaggc       240
     taatgctgct accgcccccg tcccgttaaa aagtggcaag tctcctagaa cgctctctaa       300
     ttcggcacca ttcatttggc ggcgcaggtt cagatgtaac attcctgatc tacgcggatt       360
     cggctctgta catctaaccc cataagggca gatgtcaacc ctagcatggc ctccctgctt       420
     tgcatagata accatggaat cactcaacgc gactgtgcaa cgattagaga caacgactag       480
     gagttgggac ccaacagaat gagcgataat aacgcaacac ccaaagaaac atccaacgag       540
     gaaaggagga ggagtttgca ttccgaagga atagcaaaat tcttagatcg ccagtgggcg       600
     agcaggcccc cccagcaggg ataaggacgc gcgcaccggg tactaagcct acccagacca       660
     cgkgcccggc accggccaaa ggggccgccg tggcaaagat gcccgaagat taataagcaa       720
     agagagaagc ttacgagggc gggtatagct ccgagcctac ctataactca ctgcaagmga       780
     gcaggaaggt gcacaggtct ccgagacgag cattggtgga agccaatctg aacgcacagc       840
     gtcagaggac tcctccaagc aagaacgccc aaacatcgac caagagtttc gaggttctgg       900
     gcgataagat cagggcactc agcaaaatgc tggaaggacg gcgctcgatc caccagccaa       960
     tgagggacct gatcgatagc atcatggccc tctacacggc ggcagacgaa gagakgccag      1020
     atggaggcgt ckcctgcgag kcccaagcca tccgagggca agaagcgaca ggggtgaagm      1080
     macgtcaccg ccaccgaggt ccsaagaagc mcaggggcca cgcagagccc aagcaaagsc      1140
     ggaggcmaag gcamcctccc agaaagcgcc gtctaggcca tccccggcag atgagcccaa      1200
     gggagaggaa cagtggaaaa aggtggaaag acggaaggcc aaagccaaat ccgccaaaac      1260
     caataccgcc agaagcaaac ccgctaggcg ggatgcgatt gtggtgaagg ggacggaaaa      1320
     cacctcctac gcggacatgc tgcgctcagt taaagcgaac catcgctaaa aagcctcgcg      1380
     caacatgtaa gaggaattcg gaagacggca aagggagatc tgctctttga gctctcaagg      1440
     ccgtcagacc cgaacacaag ggcgctggaa gaagccgtaa aaggctttct gggaccgaaa      1500
     gcggaggtca ggaccctgac tgagacatcg ctkgtcgagg tcagggacat cgatgaggtc      1560
     acsacggagg aggaactact ggaggcattg ttaacccagt ttggcgaaat ccaagccacc      1620
     aggtcctsca ttagtgtcta ccggaaggca tacggcggca cmcagacsgc gtcmcttaaa      1680
     gctcccagca gacacggcga acaagctggt ggaggcggga aaagttcggg tgggctgggt      1740
     gatatgccgc ataagaagga aagtgcagcc agtccgctgc ttcaagtgca tggactacgg      1800
     tcacacggct agcagatgtc ctgaagaggc caactacaga gacacctgct tcaaatgtgg      1860
     cgaatctggc cacaaagcca aggactgtaa gaagagtcca aaatgcatat tatgcgccag      1920
     gaagggagaa aaggagacgg accacactgc tactagcggc aggtgtccat accttaaaaa      1980
     ggcgctgacc caaatccgac aacgatgatc cgcatctacc agctgaacat gaatcactgt      2040
     gaagctgcgc aagacctgct agcacagagt ctccgggaga ataggtccga cattgccatc      2100
     ctgagtgaac cctatcgcat aaaaccctcc aatacgtggg caggggacaa actgcgaaag      2160
     gcagcaacgt ggagctgcgg acaacacgcc actccactca cagacatcat gtcagaaaag      2220
     ggttttataa gagctaaagt aggctggcta tacgtatata gctgctacct ccctccatcg      2280
     ctaagcctgg aggagttcac aggtatactt gacttactgg tcagagacgc gagagacaag      2340
     tcaccatgct taatcgccgg cgatttcaac gcatgggcga ccgactgggg tagcgtcagc      2400
     acaaacccga aagggagagc agttcttgac gcgtttgcgg cgctggaggt cacccttctg      2460
     aacaacgggc gcgaaaacac gttcagaaga ggaaatgcag gatctgccat agacctgacg      2520
     tttgtaagca gcacgctcgt acccaggacg tcctggaatg taagcaaatg ctacacccat      2580
     agcgaccacc aagcggtaat aacsgttatc catagtcggg ccctcgctcc tgtacctacc      2640
     agagtcagca gatacaaacc ggaawccctc gataaggatg tcttcgagta tatgctscaa      2700
     ggactgcacc caagtggcac agccacagac atggcgagcc aggtcatggc acacgtgacc      2760
     cgggcatgca atgcttccat gacgaagact ggaaatgggc ctaacaggca gcccgtttac      2820
     tggtggaacg acgacattgc caaggctcgg aaagaatgct tccgtgccag acgagcatac      2880
     cagagagcac tcagacgtgg ggttacccac gccgccgccc aacaawgcac ctttaaggag      2940
     aagaggcgag cgctcaaagc cctgataaaa gakagcaaga aacggctgtt cctggaacts      3000
     tgcgaccagg cggactcgga cccctggggt accgcctaca agctagcgat gaagaggctg      3060
     cacgcattca ggccagccag cccaaaatgc ccggatctgt tggsaaaaac agtagtccac      3120
     ctmttcccgc agcaaccgcc cagacsggta gacaggatgg camacgcgaa ctggaccgag      3180
     accacccccg aacgagtgac ggaagaagag gtcctgatag cagcgcggcg tataaaacca      3240
     gggaaagccc ccggccccga cggaataccg agcgcggtca tgaggaaggc catcgagctt      3300
     caaccaagct actttgctac tctcttcagc aggtgcatct cggaaggggt gttccccaag      3360
     tgctggaaga gacagaactt agttttgatc ccaaagggaa gcaaagcgcc tgaagacccc      3420
     tcaggatacc gaccgatctg cttgctagac accgctggca aagccctaga acgggtcata      3480
     tgctcccgac tagaggcctc aatcagcagc wcaggaggkc tctccgactc ccagttcggc      3540
     ttcaggaaag ctcgctctac saagcaggcc atccaagaag tcgtaaatct ggccgctaga      3600
     gcgatcgaag gtaaacggtg gcggtggggc accaaggagt actgcctggt ggtgacgcta      3660
     gacgtcaaaa atgcttttaa ttcggckagc tgggcaagga tcmtagaatg cctggtcaac      3720
     aagggcatwg atccaaccct aacacgaatt ataggaagct accttagcca gcgwgtgcta      3780
     cgmtacgaga ccaatgamgg amctaaaaca tacagagtca cgggaggagt tccccaggga      3840
     tcggtccttg ggccgacgct gtggaacctg atgtacgacg ggatcctccg wttgagmctc      3900
     ccatccggcg taaagatgat cggmttcgca gacgacgttg ccattgtggc agtwgccaaa      3960
     cacacgcacg agctggaggc tattaccaac gaggcgatca ggcaggcgag sgaatggctg      4020
     gcaaatgccg gacttagcct cgcagagcat aagacggagg cggtgctcat aagctccagg      4080
     aaggtcgtgg agagcgtgac tctcacagtg ggtggcacag ccatcagatc tcggccccac      4140
     ctccgctatc taggaataat cctggaccac aggctctcct tcaaggaaca cctgaagtac      4200
     acagccgaga aggcctcgac agcctgttca gcactggccc gcatcatgcc aaacacgagg      4260
     gggcccaaag agctgcgtag acggctactg agcagcgttg taaggtcgat aacgacctat      4320
     gcggcaccaa tttgggcaga cgccacagcg aataagacct acacaaaaga ggtaagagcg      4380
     gtctacagaa cctgtgccct gagaatcgtc agcgcgtttc gtacggtctc aggagatgca      4440
     gccgaagttc tggccggwat gatgccattc gacgtaggca tacgcgagct cgcatgcgca      4500
     cacgaggttt ccccagagga aaacaggaag agatcccttg ccgagtggca gcgaagatgg      4560
     caatgctccg ttaggggcag gtggacgcac aagctcatcc cacgggttga ggcgtgggta      4620
     gacagggcgc acgggcaggt gaactactac ctgacccagt tcctgagcgg ccacggctgc      4680
     ttcagagcgt acctccaccg mttcgggcac gcggaagacc cgtcctgccc aagatgtggc      4740
     actagttgcc cagaagatgc cgagcacgtc atcttcacct gcccaaggtt cagcagacag      4800
     agggacgagc tgcaaagaca gtgcggcgag ccgctggcac cagagaacct ggtcgccaac      4860
     atgctggcaa gcgtctcaaa ttgggaggca gctgcaaaaa tggcgaatag cgtcatgaag      4920
     gagctgaggc gcgaggaaca agccaacaga aggagcctct aaggctatac tcccccccga      4980
     ggtaatacca aacggttgta ccgggggggc agtgatacgc gcaactaaac aggcgcagtc      5040
     ctggtttcac aagggccact tgagtgtact gcggtacgcc aacgtctatg tgaaaaaaaa      5100
     aaaaaaaa                                                               5108
//
ID   R1-3_DK     repbase;    DNA;    INV; 3968 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3968
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1358-1358 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           76..828
FT                 /product="R1-3_DK_1p"
FT                 /translation="MRREGRKRGRNDAIIITPAAEMSYSEVLNMVTRTHDS
FT                 RMAGVGDKVTRVRKTAKGELLIELKKSSGASLTALKEQIGSVIGGSLPIRT
FT                 VSPQTTFLIRDLDELVTREELTAELASQANLPPGSVTLKSIRSLASGGQVA
FT                 TFSVPETMAGSINSLGRVKVGWTRCRIKMVESRPRCFRCMEPGHIAARCTS
FT                 TSDRSSSCFRCGQEGHKIAACNNSPRCFRCAEAKGSDTKHQAGSRHCPLVT
FT                 SRSAVRTKRA"
FT   CDS           828..3824
FT                 /product="R1-3_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIVVQLNLNHCAAAHDLLSQSVRERGADVAAISEPYR
FT                 VGPGPYWAVDSSGKAALWSCGITPKRMADVRSERGFVRAKVAGWWMFSVYL
FT                 APSMSLEEFGDAVDRLATDARCHTPCLIAGDFNAWAVDWGSSLTNARGRTL
FT                 LEAFSTLDVTLLNTGAQPTFSRAGASSVVDLTFVSCSRASQCTWVLSDVYT
FT                 GSDHAAILTALDTERAQPTPLPPQARRGYKADTLDIQSFAEHMQRLEANGS
FT                 AEQMAESAMIQLQAACDDCMTAKRAHSRHRDSVYWWNETIAAARTECIKAR
FT                 RRYQRSYRSSSHLERRSEFHRCRKALKAAIRASKTKCFLDLCDTADHDPWG
FT                 NAYRIIVKKIHGAKQGAPHDAESIDRIVEHLFPRTDNPRDTLEIATHSLEG
FT                 FEPVLETEILAAAMRIREAKAPGPDLVPNRALRLALSLRPDLFAELYGRCL
FT                 REGIFPGRWKVQRLVLLPKPGKPPEDPSAYRPICLIDGAGKVLEQLIRTRL
FT                 EKAIAAAGDLSDSQFGFRKAKSTVDAISKVVGIAKAAIAGQRWKGGAKEYC
FT                 LIATLDIRNAFNTARWGCILDALSSFGVPPYLLELLKSYFRGRTLVYDSDG
FT                 GVRSTELSCGVPQGSVLAPLLWNAMYDGVLRLPLPGRTELVGFADDIAVVA
FT                 VDKDLAGAEELCDRSISRINSWLSSVGLQLAPQKTEAVLVSSRKKVEVATI
FT                 RVCGAPIRSSRAIKYLGVMIDTRLSFREHLAYASTKATTAVRAVGRLMLNH
FT                 RGPKQASRLLLSSVARASMLYAAPVWGHALATPAYSRGLSSAHRLAALRIC
FT                 SAFRTVSDQAALVLAGTPPLDLLAAERASIHGQTNGRTLTPREKQVFRSAA
FT                 KDATSAAWQMRWESTSKGRWTYRLIPQLDCWLKRKHGQVNFHLTQILSGHG
FT                 CFRSYLRRFGHEEADTCTHCQGQLEETAEHTVFSCARFAGERDTLEARLRN
FT                 TISVETLVPLMLMSEENWQAVSDFAAKAMTELRAEERRRNSEAT"
XX
SQ   Sequence 3968 BP; 909 A; 1151 C; 1220 G; 685 T; 3 other;
     gttcccaccc aaaacgccga aagagcgcag aagcakgtcg actgcgatcc cggaccgaag        60
     acgcgggccg cgaccatgcg ccgagagggc cgaaagcggg gcagaaatga tgcgatcatc       120
     ataacccccg cggcagagat gtcctatagc gaggtcctta acatggtcac gcgcacccat       180
     gactccagaa tggcaggagt cggggacaag gtgaccagag tcaggaaaac ggcgaagggc       240
     gagctcttaa tcgagctgaa aaagtcctct ggagcttccc ttaccgctct gaaggagcag       300
     attgggagtg tgataggcgg aagtttgccg atccgcactg tgtcaccgca gaccacattc       360
     ctaatccggg acctggacga gctggtaacc agggaggagc ttacggcaga gctcgcctca       420
     caggctaatc tcccacctgg ctccgttacc cttaagagca tccgctccct cgcaagtgga       480
     ggccaggtgg caactttctc tgtcccagag acaatggctg gttccataaa tagtcttggg       540
     agggtgaaag tcggttggac gaggtgccgc atcaagatgg tggaatcccg tcccagatgc       600
     ttccgctgca tggagccagg gcacatagcg gccagatgca ccagcacctc cgacaggagc       660
     agctcctgct tcaggtgtgg ccaggagggc cataaaatag ccgcctgcaa caacagtccg       720
     cgctgcttta gatgcgccga ggcaaagggt agcgacacga aacaccaggc gggcagccgc       780
     cactgccccc tggtgacgtc gcgtagtgca gtcagaacga aaagggcatg atagtggttc       840
     aactgaatct gaaccactgc gcggcagcac atgacttgct gtcgcaatcg gtccgwgaac       900
     gcggtgccga tgttgccgct attagtgagc cgtacagggt aggccctggc ccatactggg       960
     cggtggacag ctctggcaaa gctgctctgt ggtcatgcgg cattacaccc aagagaatgg      1020
     ctgacgttcg ctcggagaga ggcttcgtgc gtgccaaggt ggcaggctgg tggatgttca      1080
     gtgtctatct ggcaccgagc atgtcactcg aggagtttgg ggacgccgtg gatcggctag      1140
     ccacagacgc aaggtgccac actccgtgcc ttatagccgg agacttcaac gcctgggcgg      1200
     tggactgggg cagctccctc accaatgcca gaggcaggac cctcctcgag gcgttctcca      1260
     cactcgacgt cacactcctc aacaccgggg cacagcccac cttcagcaga gccggggcga      1320
     gttcggtggt cgacctcacg tttgtgagct gctccagggc tagccagtgc acctgggtcc      1380
     tgagcgatgt ctatacgggg agcgaccacg cggcgatcct caccgcgctg gatacagagc      1440
     gagcgcaacc cacaccgctg cctccccaag cacgtagggg atacaaggcc gatactctgg      1500
     acatccaatc cttcgcggag catatgcaga ggttggaagc aaatggctct gcagagcaga      1560
     tggcggaatc tgccatgatc caactgcagg ccgcatgcga cgactgcatg actgccaagc      1620
     gcgcccactc tcgtcacagg gactctgtgt actggtggaa cgagacgatc gccgcggcca      1680
     gaacggagtg catcaaggcg aggcgccggt atcagcgctc ctaccgctcg agctcccacc      1740
     tggagaggcg gtcagagttc catagatgcc gcaaggctct caaggcggca atccgggcaa      1800
     gcaaaaccaa atgcttccta gacctttgcg acaccgcgga ccacgatccc tggggaaacg      1860
     cctacaggat catcgtcaag aagatccatg gggcaaaaca gggcgcccct catgacgcgg      1920
     agagcatcga caggatagtc gaacacctgt tcccgaggac ggataacccc agagacacgc      1980
     tggagattgc gacgcactcg ctggaagggt tcgagccagt cctggagacg gaaatcctgg      2040
     cggcggcgat gagaatcagg gaggcgaaag cccctggccc tgacctggtt cccaacagag      2100
     ccctgagact tgctctctcg cttcgcccgg acttattcgc ggagctctat ggaaggtgcc      2160
     ttagagaagg tatatttcct gggagatgga aggtccagag gctggtcctg ctcccgaaac      2220
     caggaaagcc acctgaagac ccatccgcct acagaccaat ctgcctgatt gatggggcgg      2280
     gcaaggttct ggagcaattg atccggacga ggcttgagaa ggccattgcc gcagccggcg      2340
     atctatccga ctcccagttc ggtttcagga aggctaagtc gacggtggat gccatctcca      2400
     aagtggtggg catcgcaaaa gccgccattg cggggcaacg gtggaaagga ggcgcgaagg      2460
     agtactgcct gatagccacg ctcgacatcc gcaacgcctt caatacggcg agatggggat      2520
     gtatcctgga tgcactatcc agcttcgggg tacccccgta cctcctggag ttgctgaaga      2580
     gctacttcag aggcagaacc ctggtgtacg actccgatgg cggtgtcaga tccacagagc      2640
     tttcctgcgg agttccgcaa gggtcggtcc tggcaccgct gctgtggaac gccatgtacg      2700
     atggtgttct gcgtctcccg ctcccaggtc ggaccgagct ggtgggcttc gccgacgaca      2760
     tagccgtagt cgcagtcgac aaggatctcg caggagcaga agagctgtgc gacaggagca      2820
     tcagccgcat aaactcgtgg ctgtctagtg ttggcctaca actagcgccg cagaaaacgg      2880
     aagccgtgct ggtgagcagc cggaagaagg tggaggtcgc aaccatccga gtgtgcgggg      2940
     ccccgatcag atcgtccaga gccattaaat acctgggcgt gatgatcgat acgaggctat      3000
     ccttccgcga gcacctagcg tatgctagca caaaggccac cacagcggtg agagcagtcg      3060
     gcagattaat gctgaaccac aggggcccga agcaggcgag caggctgcta ctgtccagcg      3120
     tagctagagc cagcatgctc tatgcggcac cagtctgggg gcatgcacta gcgaccccgg      3180
     cctatagtcg cggwctgagc tcggcccatc gcctcgcggc acttcgaatc tgcagcgcct      3240
     ttaggacggt gtccgaccag gccgcgttgg tcctagccgg gactccaccg ctggacctgc      3300
     tggcagcgga gagggccagt atccacggcc agacaaacgg caggacgctg acgcctcgtg      3360
     agaaacaggt gtttcgctcc gcggcgaaag acgccacatc tgcagcgtgg caaatgcgat      3420
     gggagtcaac gtccaaggga agatggacgt atcgcctgat tccccagctg gactgctggc      3480
     tgaagaggaa gcacggccag gtaaacttcc acctgaccca gatcctcagc ggccacggct      3540
     gcttccggag ctacttgcgg agattcggcc acgaggaagc tgacacctgc acgcactgtc      3600
     aaggacagct ggaggagacg gcagaacaca cggtttttag ctgtgcgaga tttgccggtg      3660
     agcgagatac gctggaggcc aggctgagaa acaccatctc agtggaaacg ttggttccgc      3720
     tgatgctgat gtccgaagag aactggcagg ccgtgtcgga cttcgcagcg aaggcaatga      3780
     cggagctccg agcggaggag cgacgcagga acagcgaggc aacataggtc gggatcagcg      3840
     cccgcgcgaa gcattgcttc gcggccgtac cgcgcgagca aaccgtcccg atacctgtgt      3900
     gacccaaccc ctctatcccc ccactattgt atttattctt ttcctcaata aacgaattaa      3960
     aaaaaaaa                                                               3968
//
ID   R1-3_DMo    repbase;    DNA;    INV; 3022 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-3022
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 3022 BP; 851 A; 703 C; 805 G; 663 T; 0 other;
     aaacaagtaa gaaagctcta gtcgagacta ctcgactacg agatcccctg aacccttgca        60
     tacatactta catacacaca cacacacaca cacacacaca cacacacaca cacacagtgc       120
     atagggaggt tcgagttgcg ttttcacgga gtgcggtcga tgtcatcgtg gtccatcgta       180
     gacaatagct tgaactgtgt tttcccctgt gaaagtggaa agaactgaag tcaacgtgtt       240
     tgctgtgggc gcggcgtacc cagcgacctc aaaaaaacta ccagagactt actgcgcggc       300
     ggttcgtgga attcccaagc ggtataattc ggtggtgcaa gagagggggg gcgatagcgt       360
     cagtgttttg gcgtcagggc ttctttcctt tccttgtctt ttgtgggcgc gtaaattttg       420
     ttactttagg cgtcacactt gcgcaataag aaaaatcagg tgcattcact ctaacagctg       480
     ttagtagtgc tggaaattgc atcgggcaat cagctgctca ctaacgttgg tgagttgcta       540
     agccttagca aagacagcaa cctagctgct ggagtgaagt agcagttatt aaaagtagtg       600
     catactttcg ggctctcgct gtagtcaagt tgagtttaag ttactgcggg ttgtaaactc       660
     agattatatt agtagccatt gcccactaca ggcttcacgc cgtggtagtc ggagcagaaa       720
     tggatgccat gatggaggac gagctgcaag cttttgcgcg tcgttcctcg ttgcagcgat       780
     cgccgcagca acaacagagg gtgttggcgc agccgtcgac ttctaaccag gctccagtgg       840
     ctgagtgcca ggcacccaag tcactaaaag aagcgttagc tcaaatagga gctacactag       900
     agggtctgtc tgccttattt gggggtcagc ggcatataaa tgccttaatg agagaggagc       960
     tggctaggct ggtcagcctt cacaagacgg ccgaagcgtt ctgcaaccgt tcggttaaaa      1020
     actgtgaggt gcagaccacg ccactcaaag tagaggtagc aatactccca agcggtcgag      1080
     ggaagttgcc tccgaacaga ggaaaactcc ctcaaaaaag ccgaggccca atagaagtgc      1140
     agcgaaccca aaagaaccaa tggctctacg ggctacagct gaatctgaaa cttcaaacca      1200
     ggccgcccga cagacaaacc agagcagctg gacagtcgtc aaagggcgaa agcctatgca      1260
     aaaacgtccc aggactgacg cgattgcgat ttcaggcgta gggggttgca gctacgcgga      1320
     catgcttcgt gtagttaaaa acgacccaaa tttgaagcat ctgagcagcg acgttcaagg      1380
     cattaggaag acagctaagg gggacctttt actgcaactg agtaggaagc cggagcatag      1440
     cgctgaggct ctgcacgaag ctgtaggcaa ggccttggga gaccgagcgg tagttaaaac      1500
     acttaccgaa tcggcgcaag ttgagattcg cgatctagat gagttagcga ccaaagagga      1560
     gatcttggag gcaattaggg tggagttgaa ggatagctca ctccccattg aggctatcaa      1620
     atcgcttcgg ccagcttttg gtggacagca aagagctacg gttgctcttc caattgggaa      1680
     agctaaaact ctgctcgagc tgtccaaaat tagaatagga tgggtagttt gccgtatccg      1740
     agccgtggag cagcctaaac gctgtttcaa gtgcctcgat tacggtcata tggcagcaaa      1800
     ctgcggcagc gactgtgact taaagggcgc ctgtttcagg tgtggagaaa tgggtcacag      1860
     tgccaaagca tgcaccaagc caccaaaatg tagcctctgc atccggaaag gtgaaaagca      1920
     gacggaccat tcagcaggca gcttcaagtg cccatcttac cgtgaagctg ctcgtaaaat      1980
     gaaatgttaa ggtttttgca gcttaactta aatcattgtg ttgctgccca agatcttcta      2040
     gagcagacca ttagggaaaa atgtatagat gtagcttttc tcagtgagcc tcaccactgt      2100
     agaaccagct gccctaggac atggtcaaca gacgttaatg gcaaagctgc gttgtgggta      2160
     tgcggcaact caacgaacgt actttcgaat gttaagtcat tcaatgggtt cgtacgttag      2220
     gctggagact gcgattgcaa gcgccggagg cctgtcacca aaccaatttg gattccggaa      2280
     ggcccggtca acaacggacg cgcttaacaa agttgtcggt ctggccactt ccgctattca      2340
     aggcaccaga tggaggcacg ggacgaagga atactgcatc atcgcgaccc tggatgtaag      2400
     gaatgccttc aacacagcta gttgggatat gatactgaat gcgctgtcac aatataatat      2460
     ccctaaatat ctaagagaga taataaagag ctacttcaga ggaagaacac tggtatacaa      2520
     cacgagtgag ggtccccaaa ctcatacagt gtcagctgga gtaccccaag gctcagtgct      2580
     ggggcctctc ctatggaaca tcatgtacga cggcgtactg cgcttggaac taccagcagg      2640
     cgcgcacacc attggctttg ctgatgatgt agctgtcgta gccataggaa aggagctcaa      2700
     agatacagag gatatgtgca gcgaaagtat caatcgcata cgaagctggt tgacaggagc      2760
     tgggctcgag ctagcggcac acaagaccga agttgtacta gtcagcagtc gcaaaagagt      2820
     ggaaactgcc aatataaaga tcggcagcgt caccattgcg tcaaagaggg cgataagata      2880
     tcttggtgtc atgatagaca caagattaac tttccgcgag cacttagaat atgtgcataa      2940
     aaaggcagct gattcttgta gagctctctc gagaatcatg cttaacacgc ggggacctaa      3000
     acagcaacga cgtctcctcc ta                                               3022
//
ID   R1-3_DPer   repbase;    DNA;    INV; 5126 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5126
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1669-1669 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..2002
FT                 /product="R1-3_DPer_1p"
FT                 /translation="MEVGNPFGKSAAMARSPPQPKATPLAQQLAESLSSPT
FT                 TAPKSLADAVSQIGLILKDLSTLFTGQRHINQRMRDSLTQLVNLQEMVADL
FT                 TSQENGKVPERKEADTQTSPIAASRNGRGLGTLERSQATPKRAREPTAGQR
FT                 QTPPKKFRPRERTVREPETQRSPTGSSSVGTRKKQTTKKTRPDAVVIASVG
FT                 NITYAELLKSVKGDATLSHVSGDVESIRKTAKGDLLLRLKKAPSHSAEEVK
FT                 SAVGNALGAKAVVRALTEQTRLELMDLDEITTKAEILEALKRATGVTEIPE
FT                 DAVRSLRATRSGMQIATLSLQAVAANKLAEMGKIRVGWVNCRIKQIMSPKR
FT                 CYKCLEFGHISVNCTGEKDHRGACFRCGGRDHEARNCSKDPHCILCAQKTG
FT                 SPTDHASGSFKCPAYREAVRKLKC"
FT   CDS           1999..4965
FT                 /product="R1-3_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLRIIQLNLNHCRVAQDLLTQSVTELNTDLALLSEPY
FT                 KTVRSNTWVMDQSGKAAIWMCGKPAQHLDGVKRSKGYVRGRLKDLWVYSCY
FT                 LPPSWSLEEFSDTIDKLADDIRAHSPSLVAGDFNAWATEWESATTNARGRV
FT                 LVEAFASLDIVLKNAGSNPTFSRAGTTSIIDLTYISTRLAASTLWQISEQY
FT                 TASDHNAILCSIQTRRATQSIATRGHYKETTLNTPAFRAALAGLAEVEGEG
FT                 DLVAQVMGQLERACKASMERSKPFKGHRPVYWWNQAIEEARHACIGARRAY
FT                 HRSRGTADFQALKEIYTRRRKALKKEIKNSKQRCFLDLCDEAENDLWGKAY
FT                 KVVMKKTGAFKHAAPTGADKMEAIVKHLFPAQDTQIDRITSTGHQVPPVTP
FT                 QELAKLAKRVPNCKAPGPDGIPNRALKLAISLHPTIFAQTYTKCLTDGCFP
FT                 GRWKKQKLVLIPKPGKDTEDPSAYRPICLLDGAGKMLESIISARLTEAIEA
FT                 AGGLSDSQYGFRKARSTLDALDKVCGTARKALEGTRWLGGAKKYCLVATLD
FT                 VKNAFNSASWSRIMSSLRTLEIPGYLQAMVSDYLDNRWLTYDTEDGPRSYS
FT                 ITGGVPQGSVLGPLLWNTMYDGILRLNFQQGVEIVGFADDVAVTATKKTLA
FT                 ETESCMNEAIRIISDWLDLAGLKLAEHKTEAVLISSRKQVETARITVGGAS
FT                 ITSKRAIRYLGVMLDTRLSFREHLQQTHQKAHGVVMAVSRMMLNHRGPKST
FT                 SRRLLFNVAKSSILYAAPIWAQATRTKSYTKGIESDFRLGALRVSSAFRTV
FT                 STEAIMVISGIPPVELAAKEASEIHKGRKAANTQAEARTAKTRARAECLES
FT                 WQLRWDNAVTGRWTHRLIPNIAAWMNRRHGELTFSLTQVLSGHGCFKEYLH
FT                 RFGHEEDGLCSCCGTVENAEHVLTACARFSEARRRAEGTIGVPITVEGLVP
FT                 RMLENQANWTAICSLATEIASELRRLERTRNERP"
XX
SQ   Sequence 5126 BP; 1548 A; 1330 C; 1402 G; 841 T; 5 other;
     ggaaagtgaa cagacgtgtt tctagtgtac ctccagtgat catcaggaaa aaacaagctt        60
     tagaacctcc tgaaaaaggt aaacaagtaa gcgcgtggat tccattagga aggggtacgt       120
     accgagcctg gcccaagcgt gaagggcaat cccacagcgc aaaaaccagg tgaaatcggg       180
     tgctccagcc agggctgagg ggcggagggg aaatccagtc ccgctatctc ccgctctctc       240
     cccactggga ccacaaaaac aaagtttttc cgcgcgaact tcacttcact tcacagcgtt       300
     tttccattct cggtgactcg agcagctgat cgatatagta gcagtgttag atagtgcgca       360
     aactatcagg cagctgcact atcggctaca caaatcttgt agcaaccagc cgccgacaag       420
     cgtaaaacca aaaacaaaga agaagaggga aaaaaaaaaa aaaaaaaaca gaaaggtgca       480
     tacttccagg cggaactatt tgttctggta aggagtaagc gatacctgcc tacatctagg       540
     ccaaaaktag ctagcacaag tctagatagg ggaaagggct gaaggtcgcg gatccgacta       600
     ttttccaacc cccccgccta ggcggtgtcc cggaaaaagg ggctctgggg accgggaagg       660
     ggcggtatat cccccatcga ccagaagcca agggaaacct gtggccagcg cgggatcccc       720
     tatcgcctga cctggtaaag caagcgacat ggaggtagga aacccctttg gaaaaagcgc       780
     agcgatggca agatcgcccc ctcagccaaa agccacgcca ttggcacagc agctggccga       840
     atcgcttagc agccctacca cggcaccaaa gtccctggcg gacgcggtaa gccaaatagg       900
     gctgatcttg aaggacctct cgaccctgtt caccggccag aggcacatca accagcggat       960
     gagagacagc ctaacacagc tggtaaacct gcaggagatg gtagccgacc tcaccagcca      1020
     agaaaatggt aaggtccccg agcgcaaaga ggcagacacg cagacgtcgc caatagckgc      1080
     aagtaggaac ggcagagggc tcggcacmct ggagaggagt caagcgacac caaaacgtgc      1140
     aagggaacca acagcaggac agaggcagac accgccgaag aagttcaggc cacgggagcg      1200
     aacggtccgc gaacctgaaa cccaacggtc cccaactggc agcagttcgg taggaaccag      1260
     aaaaaaacag accacgaaaa aaacgcgacc agacgctgta gtaatagcga gcgtaggaaa      1320
     catcacttac gcggaactat taaaatcggt gaaaggagat gcaacgctga gccatgtgag      1380
     cggtgacgtg gaaagcatca ggaagacagc aaagggagat ctgctgctgc gcctcaaaaa      1440
     agccccgagc cacagcgcgg aggaggttaa atcggcggtc ggaaatgcac taggggccaa      1500
     ggcagtggta cgggccctta ccgaacaaac aaggctcgag ttaatggatc tagatgagat      1560
     aacaacgaag gcagagatat tggaagcact aaagcgtgcc acaggggtaa ccgaaatccc      1620
     cgaggacgcg gtaaggtcct taagagccac cagaagcggg atgcagatag ccaccctatc      1680
     cctccaggca gttgccgcca acaaactcgc tgaaatgggg aagataaggg tcggctgggt      1740
     gaactgccgt atcaagcaaa taatgtcgcc aaaacgatgc tacaagtgtt tggagttcgg      1800
     gcacatctcg gtaaactgca ccggagaaaa ggaccacaga ggagcgtgct ttagatgtgg      1860
     aggcagagac catgaggcca gaaattgcag caaggaccca cactgcatac tctgcgcaca      1920
     aaaaacgggt agccccacag accatgcctc gggaagtttt aagtgcccag cgtaccgcga      1980
     ggcagttaga aaactcaaat gttaaggatc atccaactga accttaacca ttgcagggtg      2040
     gcccaagacc ttctcaccca atccgttaca gagctcaaca cggacctggc actgctgagc      2100
     gagccctaca agaccgtgag atccaacacg tgggtcatgg atcaatcggg gaaagcggca      2160
     atctggatgt gcggcaaacc agcacagcac ctggacggag ttaaaagatc caaaggatac      2220
     gtacgaggga ggctgaaaga cctatgggta tacagctgtt acctaccacc cagctggtca      2280
     ctcgaagagt tcagcgacac aatagacaaa ttggcagatg acatcagagc acactcgccg      2340
     tcgctagtag ctggggactt caacgcctgg gcaacggaat gggagtcagc aacaacgaat      2400
     gccaggggcc gtgtcttagt ggaggctttt gcctccctgg acatagtcct aaaaaacgct      2460
     ggttccaacc caactttcag cagagcaggt accacatcca tcatagacct cacctacata      2520
     agtactcgac tagcagcgag cacgttatgg cagatcagcg agcagtacac cgcgagcgac      2580
     cacaacgcta tcctctgcag catccagacc agaagagcca cccagagtat cgctacgagg      2640
     gggcactaca aagaaaccac gctgaacaca ccagccttca gggcagccct agcaggacta      2700
     gccgaggtgg aaggcgaagg cgatctagtg gcacaagtca tgggacaact cgaaagggcg      2760
     tgcaaagcta gcatggagcg cagcaaacca tttaaaggcc ataggccggt atactggtgg      2820
     aaccaggcaa tcgaggaggc ccgccacgca tgcataggcg ccagaagagc ataccacaga      2880
     tcccgcggaa cagcagactt ccaggctctc aaggaaatct acacccgaag aaggaaggca      2940
     ctgaagaagg aaatcaaaaa tagtaaacaa cgatgcttct tagatctctg tgacgaagcc      3000
     gaaaacgatc tctggggaaa ggcctacaag gtggtcatga agaagaccgg cgcattcaag      3060
     cacgcggcac caacaggagc ggataaaatg gaggcaatcg tcaagcacct attcccagcg      3120
     caggacacgc agatagacag gatcacgagt acgggacacc aagtaccccc agtgaccccg      3180
     caagagttgg caaaactagc aaagagagtg ccaaactgca aggcaccagg accagacggc      3240
     atcccaaatc gggccctcaa gctggctatt agcctgcacc cgacgatctt tgcgcagacc      3300
     tacaccaaat gcctcacaga cggatgcttt cctggaagat ggaagaagca aaagctggtg      3360
     ctgataccaa aacctgggaa agacacggag gacccatcgg catacaggcc tatctgcctc      3420
     ctggacggcg caggtaagat gctggaaagc ataatcagcg caaggctaac ggaggctatc      3480
     gaggccgctg gtggactctc cgacagccag tacggcttta ggaaggctcg ctctaccttg      3540
     gatgcgctag acaaggtgtg cggcactgcc agaaaggcct tggaaggcac acgatggctc      3600
     ggcggggcca aaaaatactg tctggtggca acactggacg tgaaaaacgc ctttaactcg      3660
     gcatcctgga gcaggataat gtcctccctg cgcacactcg aaatccccgg atatctacag      3720
     gcgatggtca gcgactacct ggacaacaga tggctgacgt acgacacgga agatggccct      3780
     cgatcatact ccatcacggg aggagtccca caaggatctg tactgggacc tttactgtgg      3840
     aataccatgt acgatggaat tcttcgcctc aacttccagc aaggagtcga aatagtggga      3900
     ttcgctgacg atgtcgcggt gacggccacg aagaaaaccc tcgcggagac cgagagctgt      3960
     atgaacgagg caatcagaat cataagcgac tggctagacc tggcagggct caagctagcc      4020
     gagcacaaga cggaagcggt tctcatcagt agcaggaaac aggtggagac ggcgaggata      4080
     accgtaggag gagcctcaat tacctcaaaa cgagcaataa ggtacctggg agttatgctg      4140
     gacaccagac tgtcgtttag agagcacctg cagcagacac accagaaggc acacggcgta      4200
     gtcatggcgg tgtcacgtat gatgctgaac cacagaggcc caaagtcaac gagtaggaga      4260
     ctgctattta acgtggccaa gtcatccata ctatacgcag cgccaatatg ggcccaggcc      4320
     acgaggacca agagctacac taagggcata gagtcggact tcagactcgg agccctgcgg      4380
     gtcagctcgg cgttccgtac tgtctccaca gaggcaataa tggtaataag cggcatacca      4440
     cccgtagagc tcgcagcgaa ggaagccagt gaaatccaca agggaagaaa ggccgccaac      4500
     acacaggcag aagctagaac ggctaagacc agggcgaggg ctgaatgtct cgagagctgg      4560
     caactcagat gggataatgc tgtaaccggc cgctggaccc accgtctaat ccccaacatt      4620
     gcagcatgga tgaatcggcg gcatggagaa cttacgttct cgctgacaca agttctcagc      4680
     ggccacgggt gctttaaaga gtaccttcac cgctttggcc acgaagaaga tgggctgtgc      4740
     agctgctgcg gaacagtaga aaacgctgag catgtsctga ccgcatgcgc cagattctca      4800
     gaggcccgca ggcgagcaga aggcaccata ggagtgccca ttacggtgga aggtttggta      4860
     ccaaggatgc tggaaaacca agcaaattgg acggcgatat gcagtcttgc aacggaaatc      4920
     gcttcggaac tgaggcggct tgaacgcaca cgaaatgagc ggccgtaata ggctagccag      4980
     ccttgtgaag caatgcttca cggcagtccc gcaagtctgg tccatatata tgtatacgct      5040
     atatattttt attctaattt ttatattctt atattttata tatatatatc ctatttttaa      5100
     tatgaawaaa aaaaaaaaaa aaaaaa                                           5126
//
ID   R1-3_DSuz   repbase;    DNA;    INV; 5798 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   17-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5798
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 606-606 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           938..2680
FT                 /product="R1-3_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MQQMKGMSTKNETTPGGNHTSGNPPVGTPTARARILE
FT                 ALNPIPNNKPDETVANLAVSTVNAPSLSRRIENKGTEAAGAFKSSSKLLRS
FT                 PVLEKPAGQPSTREDDKLQDAAKRQRDPGSPTGGQRTASAKRPKADQELTG
FT                 PEQLAEIGALLDEVLHLTSVMQVRHINVTMKAMFSRMKSLQEGAVISFNQV
FT                 GDSHQQKEPTECNKCKGPLRNSESKEQQTPVCLQKDNAAQTEFWRNATQGP
FT                 MVTSAAQTDPWRRLSQPGTVLNGGEPPTSPAQSSARRAPAGSQQKKKRNPH
FT                 EEHAKKRDPRGKTAAGGSAGKDDGKDATTAWRKAAPKKRARKPHRPDALIV
FT                 EANGKTYSEVLAMVTRRDDGKLQSLSTRVNKVRRTANGNLLLELNRSEDTS
FT                 TEEIKESLEAVLGEATAVRALSESARTRTVVISDLDPLVEAVDVTKALVDQ
FT                 FAVNAESVKLRSLRPSHRDTQTAVVGLPSRDAEAVLCKGKIKLGWSICKVK
FT                 ERDSQPRCYKCLEIGHIAIKCHSKVDRSGCCIKCGKTGHKIAQCPNESVCF
FT                 ICTEGGPKSRNHQAGSRRCPHAAKRAVAKPREWK"
FT   CDS           2572..5658
FT                 /product="R1-3_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLYMHRRRTEVEEPPSRKQAVSSRRKKSRSQTPRMEV
FT                 IQINLNHCRAAQDLLLQSARECKADLAVISEPYKVKDDGDWITDTSGKAAI
FT                 WLCRRNGKSFLDVHKGSGFVRARIGEMWVYSCYLAPSLSTTDFSHALDTIA
FT                 FDARGRYPAIIAGDFNAWAEEWGCPSSNIRGHTLLNAFATLDVTLLNEGTQ
FT                 ETFNRAGAGSIIDLTFVSSALARRSHWRIGDFFTASDHEAILCTVGTRPGP
FT                 ETRNRAVKGYRQETLNAEAMSRCLADMHCSTEADANTNADAIAASLEDACR
FT                 TGMLMRKPYSRDHEPVPWWNSEIATLRRICLRARRALQRSRRTDRAEAAHV
FT                 AFKQARRTLKHAILDSKRECFLKLCDAAEQDPWGGAYRLVVKRVSAGSRSP
FT                 TDPETLSDIVRTLFPSGSAKESVQHETAPTWEIEEVTEAEVAEAGRSLQNN
FT                 KAPGPDAVPNRAMKLALGLRPGTFADLYNACLREGTFPRRWKVQKLLLLNK
FT                 PGKPPGEASSYRPICLLDTVGKVFEKLISKRLNLAVDAAGGLSTAQFGFRK
FT                 GKSTLDAIRMVTGTAAEAIRGKRWKGGTKKYCLLVTLDIKNAFNTANWTRI
FT                 MQALRRLRIPEYLTRIVDSYLGERVLLFDTSDGPKEYCVTAGVPQGSVLGP
FT                 LLWNTMYDGVLRLPMPANVHVTGFADDVAITIVAKTIAEVEDMANTAVRKV
FT                 ESWLSLAGLQLAAHKTEAVLISSRQLVETAKLTVGGVDIVSQRAIKYLGVM
FT                 IDTRLSYKEHLEYANKKAAATARSLARILLNTRGPKQERRKLIASVVTSQV
FT                 LYAAPVWAKAATTPSYMSGVARTHRLCATRISCAFRTISEEAALVIAGLVP
FT                 VQELVREAVEVEETVTTTDDQTRREARRPARERSISRWQERWDSATSGRWT
FT                 HDLIPVLSPWLERRHGQVDFYLTQILSGHGCFRSYLKKYGHDTSDGCPSCG
FT                 SGIEENARHVLFECVRFVEDRTALEIATGVSTSPSTLVPTMLRGQTEWDAT
FT                 TKFAASVMRKLRIAERERRGLDT"
XX
SQ   Sequence 5798 BP; 1542 A; 1594 C; 1701 G; 961 T; 0 other;
     gaagaagaag tgtgtgcagt gagtgaaggt gtgggatcca gcgctccgct gaaaaagtcg        60
     gccagcagcg tccacatgca gcggcgcggc agctcgcggc ttccagcggg cggcttaggg       120
     actcacctgt ctccgcacat gaaggcaaac ccaccgtgaa ctccagaagg catctaggct       180
     gacatcgaga ttcctcggga accaagcggc accaagtagc actctcttga gtgattctag       240
     atggcgggta aatattgttg ttgcaccttc tctccagctt cccacgcttt gtgccgcatt       300
     acgctcagct ggcctgagca gtgttgcaca acgtcagcag atccagctga tcgtagggca       360
     agctggcaaa agctccctgc catgatagac cgagacccta catgtagatg tcgtgttggt       420
     gcggcaccca gcgtaggaat gtactgccta catttgagcg ttgctgctag ctgacgactg       480
     ctacccgcta cgggttgcac ttgtcgatcg gcgctcagca gtagcataca tctaagggct       540
     gctgatcgaa ctccttggca aggagtccgg gaccgaacga gtgtcaccac gtctgcacgg       600
     cagaggtctt cctggtgcca aaggtcaagg agcagaccga ctgccaaccc ccccgctaac       660
     gcggtacacc gtgaaacggg gctctggcga ccgagtagag gcggtataac ctccatcgga       720
     aagtcgtggg gaaatccgcg gccaccggtg gaaacctcga tccgcgcaca ccgaacttat       780
     cgcaaaaaac ccacgtagcg tctgacccat actgggcggc tgcgtggtct gcgtctgtgc       840
     catattggcc ggcagtcacg tcacctggca gcaggtataa aatgcaaaca acctggcagt       900
     aggtttaaaa tgcaaacaac ctggcagtag gtataaaatg caacaaatga aaggaatgtc       960
     gacaaaaaac gaaactactc caggtggcaa ccacacaagt ggaaatccac ccgtgggaac      1020
     ccccacggcc agggcacgga ttctggaggc cctaaatccc attcccaaca acaaacctga      1080
     cgagacggtg gcgaacttgg ccgtctcgac agtgaatgca ccaagtttaa gcaggaggat      1140
     tgaaaacaaa ggtacggaag cagccggagc gttcaagagc agctcgaagc ttcttaggtc      1200
     accagtcctg gaaaagcccg cgggccagcc gtccacgcgg gaagatgata agttgcagga      1260
     cgcggccaag cgccaaagag acccaggcag cccaaccggt gggcaaagaa ctgcctctgc      1320
     caagaggccc aaagcggacc aggagctcac tggaccagaa cagctcgcgg agattggagc      1380
     gcttctcgac gaagtcctcc acctcacgag cgtaatgcag gtgcgtcaca tcaatgtgac      1440
     catgaaagcg atgttctcga ggatgaagtc cctccaagaa ggtgcagtga tctccttcaa      1500
     ccaagttgga gactcccacc agcaaaaaga gcccacggag tgcaacaaat gcaaaggccc      1560
     tctccgaaac agcgagagca aggagcaaca gactccggtt tgtcttcaaa aggacaacgc      1620
     cgctcaaacg gagttctggc gaaacgcgac acaaggcccc atggtcacca gcgcggcgca      1680
     aacagacccg tggcgaaggc ttagccaacc cggcacggtt ttaaacgggg gagagccccc      1740
     gacttcacca gcgcaatcgt ctgcgcgaag agcgccagcg ggatcccagc agaaaaagaa      1800
     gagaaaccca catgaggagc atgccaaaaa acgggacccc agaggaaaaa cagccgcggg      1860
     aggcagcgct ggaaaggacg atggaaagga cgcgaccacc gcctggagaa aggctgctcc      1920
     aaaaaagcgg gcgcgaaagc ctcaccgccc ggacgccctt atagtggagg caaatggcaa      1980
     gacctacagc gaagtcttag cgatggtaac ccgtagggac gacggcaagc tacaaagcct      2040
     cagcacccgt gtaaacaagg tccggcgcac agcgaacggg aaccttcttc tggagctcaa      2100
     cagaagcgag gacaccagca cggaggaaat aaaagagagc cttgaggctg tcctaggaga      2160
     agcgactgcg gttcgagcgc tatccgaaag cgcaaggaca aggacggtgg tgattagcga      2220
     ccttgacccg ctagttgagg ccgtagatgt caccaaagct ctggtggacc aattcgccgt      2280
     gaacgccgaa tcggtcaaat tgaggagtct acgtccatca cacagagaca cccagacggc      2340
     agtggttgga ctgcccagca gagacgcaga agcggttctc tgcaagggta aaatcaagtt      2400
     aggatggtct atctgcaagg tgaaggagag ggactcgcag cccaggtgct acaagtgcct      2460
     agagattggc cacattgcta taaagtgtca tagcaaagtg gacagaagtg ggtgctgcat      2520
     taagtgcggc aagacggggc acaaaatcgc tcagtgtccc aacgagagcg tatgctttat      2580
     atgcaccgaa ggaggaccga agtcgaggaa ccaccaagca ggaagcaggc ggtgtcctca      2640
     cgccgcaaaa agagccgtag ccaaaccccg cgaatggaag tgatccagat aaacctgaat      2700
     cactgccggg ctgcgcagga cttactcctg cagtcagcga gggaatgtaa ggcggacctg      2760
     gctgtcatca gtgaacccta caaagtcaaa gacgacggcg actggataac ggacacatcg      2820
     ggcaaggccg cgatatggct gtgcagaaga aacggtaaat cctttctgga cgtgcacaag      2880
     ggctcgggtt tcgtccgagc tcgtataggc gaaatgtggg tatacagctg ctatctagca      2940
     cctagcctct ccacgacgga ctttagccat gccttggaca cgatcgcctt tgacgcaagg      3000
     ggccgttacc ccgctatcat cgcaggcgac ttcaacgcgt gggccgaaga atggggatgc      3060
     cccagcagca acataagggg gcacacccta ctcaatgcct ttgcaacgct agacgtcacg      3120
     ctgctaaacg aagggaccca ggagacgttc aatcgggctg gagctgggtc tatcatagac      3180
     ctcacatttg tgagctccgc gttagcccgg cgctctcact ggagaatcgg cgacttcttc      3240
     acggccagcg accacgaggc aatcttatgc acagtgggca cacggccagg accagaaacc      3300
     cgtaacagag cagtcaaggg ctaccgccag gagacgctaa acgccgaggc gatgagcagg      3360
     tgcctcgccg acatgcactg ctccactgaa gcagacgcga acaccaacgc ggacgcgata      3420
     gcagccagct tggaggatgc gtgcaggaca gggatgctga tgcgcaaacc atacagtaga      3480
     gaccacgagc cggtaccttg gtggaactcg gagatagcga ccctcagaag gatctgcctc      3540
     agagccagaa gggctcttca acggtcaaga aggaccgaca gggccgaggc cgcacacgtc      3600
     gccttcaagc aagccaggag gaccctgaag cacgccatcc tggacagcaa acgggaatgt      3660
     ttcctgaagc tgtgcgacgc agccgaacag gatccgtggg gtggggccta cagactcgtg      3720
     gtaaagcgag taagcgcagg cagccgctct ccaacggacc ctgaaacact tagcgatatt      3780
     gttcgcacac tgtttccttc gggtagcgcc aaggaaagcg tacagcacga aacggcgcct      3840
     acgtgggaga tcgaggaagt cacggaggcc gaggttgctg aagcaggacg cagcctgcag      3900
     aacaacaaag ccccaggtcc cgacgcagtg cccaacagag caatgaagct ggcgcttggg      3960
     cttcggccgg gcactttcgc ggacctctac aacgcctgcc tgcgcgaggg aacatttccc      4020
     cggagatgga aagtacagaa gctgcttcta ctcaacaaac ctgggaagcc gcctggtgaa      4080
     gcttcctcct acaggccaat ttgtctgctt gacactgttg gcaaagtgtt cgagaagctc      4140
     atctcgaaac ggctaaacct ggccgtagat gcggctggtg gcctatccac cgcccagttt      4200
     ggtttccgga aaggaaagtc aacgctggac gcgatccgaa tggtcaccgg gacagctgcg      4260
     gaagccatac gcgggaagcg ttggaaaggc ggcacgaaga agtactgcct tctggtcacg      4320
     ctcgacatca aaaacgcgtt caacacggcg aactggacga ggatcatgca ggcactaagg      4380
     cggctacgga ttccggagta cctcaccagg atagtcgaca gctacctcgg cgaaagggtg      4440
     ctgcttttcg atacgagcga cggcccgaaa gagtactgcg taactgctgg ggttccacaa      4500
     ggatcggtcc tgggccccct gttgtggaac actatgtacg acggagtgct gaggcttccc      4560
     atgcctgcaa acgtccacgt gactggcttc gcggacgacg tcgccatcac gatcgtggcc      4620
     aagacgatag ccgaagtgga ggacatggca aacactgcgg tgaggaaggt ggaatcatgg      4680
     ctctcactcg ccgggctcca actcgcggca cataaaacag aggccgttct tataagcagc      4740
     cggcaactcg tcgagacggc caagctgacg gtcggagggg ttgacatagt ctctcaaaga      4800
     gccataaaat acctaggcgt catgatagac accaggctgt cctacaaaga gcacctagag      4860
     tacgccaata agaaggccgc tgcgaccgcc agatcgctcg cgcggattct cctgaacaca      4920
     aggggcccaa agcaggaacg gaggaaactc atagcgagcg tcgtcacgtc ccaagtactt      4980
     tatgccgccc cggtatgggc taaagccgcc acgacgccct cgtatatgag tggcgtggct      5040
     cgcacgcaca gactatgtgc aacaaggata tcgtgtgcct tccggacaat ctctgaggaa      5100
     gctgcgctgg tcatagctgg tctagttccg gtgcaagaac tggtaagaga ggcggtagaa      5160
     gtggaggaaa cggtcacgac cacggacgac caaactaggc gcgaggcaag acggcccgcg      5220
     agagagagat ccatctctcg gtggcaggag aggtgggatt ccgcaacctc tggacgctgg      5280
     acccacgatc tgattcccgt cttgagtccg tggctggaaa ggaggcacgg gcaggtggac      5340
     ttctacctga cccagatctt gagtgggcac ggatgcttcc ggtcgtacct gaagaagtac      5400
     ggtcacgaca cgagtgacgg atgcccatcc tgcggctctg gaatcgagga gaacgcacgc      5460
     cacgtcctgt tcgagtgcgt gcggttcgta gaggacagga ccgccctgga aatagcgacc      5520
     ggtgtcagca ctagccccag cacgctagtg ccaaccatgc taagaggcca aacggagtgg      5580
     gacgcgacga ccaaattcgc tgcgtctgta atgcgaaaac tcaggatagc tgagagagag      5640
     aggagaggcc tggacacgta agctgccgcg gttgtgcgaa gcattgcttt gcggccgtac      5700
     cgcacaacat ctgcagttta cgcccattta tcttctaaat gtatatttat tagttgtagt      5760
     aataaagcta aaaaaaaaat ggaatacaaa aaaaaaaa                              5798
//
ID   R1-3_DTa    repbase;    DNA;    INV; 4975 BP.
XX
AC   .
XX
DT   18-JAN-2013 (Rel. 19.10, Created)
DT   18-JAN-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4975
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 14(10), 2832-2832 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1854..4841
FT                 /product="R1-3_DTa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRTAQDLLTQTVREVGTEVAILSEPYR
FT                 TGTSREWIVDRTGKAAIWLCGLEATRLSEVWAAKGFVRGLIDGVWVYSCYL
FT                 APSLTLAKFTKTMDVLSSDIRGRSNVVVGGDFNAWAQDWGSQTTNARGRVV
FT                 LEAFAALDITLLNEGTQQTFNRAGAGSIIDLTYASSSLARQARWRISDIDT
FT                 GSDHEAILVSIREGSAHRSTPPLARKAYRQDTLSVPGFAAALEDLNLTGMD
FT                 CANDAANKLAADTERACDISMQQRKKYRKHHQPVFWWNEEIAILRASCLRL
FT                 RRQVQRARHSLSLDACNDRFRSARKALKKAIRASKRECFLKLCDEAEKDPW
FT                 GGAYRMVVKRVNAGNNAPTDPEALEGIVRVLFPRGQPIPASRTTATGESDI
FT                 CPVTEQEVVEVGRKLASKKAPGPDMVPSRATKLLLHLHPEKMAALFNQCLT
FT                 EGTFPARWKQQKLLLLVKPGKPAGDPSSFRPICLLDTIGKVFEKVIVTRLE
FT                 AAIEHAGGLSPSQFGFRKKRSTLDAITKVKSLAEKAIEGTRWKGGTKEYCL
FT                 VVTLDIRNAFNSADWGRTLEALKAFHVPEYLLKIVRSYFDSRVLLLDTSEG
FT                 TRSHEITAGVPQGSVLGPLLWNTMYNGVLNLSLPDNTTIVGFADDVALVVV
FT                 AKEICDAEMAANTAIRAVEAWLAVAGLELASQKTEAVLISSRKQVDTAKIT
FT                 VGGNEITSQRAIRYLGVILDTRLCFKEHLEYAHEKANATARALSRILLNTR
FT                 GPKQGRRKLLASVVTSQLLYAAAVWADATELKSYMRGAISTYRLCALRVAC
FT                 AFRTVSDDAALVIAGQVPLPELVREAKEVRDLGEPGEQGARSEAKSEARAR
FT                 SMERWQSRWDNSTKGRWTHKLIPDIRPWIGRKHGEVDFYLTQVLSGHGCFR
FT                 GYLKKYGHDTANGCPECGSGVKEDARHVLFECHRFYHERKALQDATGVSVE
FT                 VHTLVPTMLVSQDFWDATAEFAANIMKTLRRLERRRNGQME"
FT   CDS           join(161..931,763..1860)
FT                 /product="R1-3_DTa_1p"
FT                 /note="zinc finger motifs."
FT                 /translation="MQPSMGHNATQKGMSSQNIITPGGSHSSGNPPAGEPA
FT                 ARARILEALKNIPKTPEVAVADLAATAGKAPSQGNRDEESVGPSAFRKSSR
FT                 IPRSPILLAGAAAHPDKDTDTQTPKRSRDNTSPSSVQRKTPPKRCRAAQEP
FT                 NCLHIITELGKILDEVLSDVNDKQVRHITVAMKSKLAKLKDLQTTISEGLN
FT                 ATSGEKEQDPEGVASAGNACKASRTGKIKPTRSSKPRRSGTRPSVPKPIPR
FT                 SRSPHQPTETRVLDGTGSGVCRKCLQGIEDGQNKADKEQQTQKVWNKAIGT
FT                 QTDPEEPKPAPANGDSRAGRNLAPLAKAKKGKNPARRGPQEQQQPRXQQPL
FT                 LEAPSTSNGAPREGPERAANPWRTVTRARQKLTRTRPDAVVVTANGKSYSE
FT                 ILAMVTRRDDDKLSGLGSCVSKVRRTNNGNLLLEVAKGSTTSAESMKDSIA
FT                 QVLGGEAEVRSSSEESKVVVLEIRDLDALTKKSDIAAALAKQYDFDEGKVK
FT                 VRSIRPGYSESQIAVISLPLTIGKVVTKGGVVRIGWTICRIKERGGLPRCY
FT                 RCLETGHIASKCVSRIDRSGCCFKCGDQGHKAAQCSNKSACFVCAAAGRKD
FT                 TSHQAGTKNCPSRTSGAAPSKASCN"
XX
SQ   Sequence 4975 BP; 1339 A; 1371 C; 1502 G; 761 T; 2 other;
     ggtatagcct ccttcggaga agtcgggggg aaatccgcga ccaccgttgg agtcctcgat        60
     ccgaaaaacc cacgaagcgt ctgtcccaca ctgggcggct acgtggtctg cgtctgtgcc       120
     acagtggccg gcagtcatca cacctggcag aaggtataaa atgcagccca gcatgggtca       180
     taatgcaacc caaaaaggaa tgtcttcgca aaacatcatt actccaggtg gcagccactc       240
     aagtggaaat ccacccgcgg gggaacccgc ggctagggca aggattctgg aggccctaaa       300
     aaacattccc aaaacccctg aagtggcggt ggctgacttg gccgccacgg caggtaaagc       360
     accaagccaa ggaaacagag acgaggagtc tgtaggcccc tcggccttca ggaaaagtag       420
     taggatcccg agatccccga tccttctagc gggggcggca gcccatccgg acaaggacac       480
     ggatacccaa acgccgaaaa ggtcgcggga taacacgagt ccaagcagcg tgcaacggaa       540
     aacgccgccg aagaggtgta gggcagccca ggagccaaac tgcctacaca tcatcacgga       600
     actgggcaag atcctggatg aagtcctcag cgatgtgaac gacaaacagg tccgccacat       660
     aacggtagcc atgaagtcga aactggcgaa actgaaggat ctccagacga ccatctcaga       720
     gggactaaac gctaccagcg gggagaagga gcaggaccct gagggagtgg cgtctgccgg       780
     aaatgcctgc aaggcatcga ggacgggcaa aataaagccg acaaggagca gcaaacccag       840
     aaggtctgga acaaggccat cggtacccaa accgatcccg aggagccgaa gcccgcacca       900
     gccaacggag actcgcgtgc tggacggaac ctagcaccgc tcgcgaaggc gaagaagggg       960
     aaaaatcccg ccagaagagg cccacaagag cagcagcagc ctcgcwccca gcaaccattg      1020
     ctggaggcgc cgtcgacgag caacggagcg cccagggagg gcccggaaag agcggcaaat      1080
     ccctggagga ccgtcacgag ggcaagacag aagctgacgc gcactcgtcc ggatgcggtt      1140
     gtcgtcacag cgaacgggaa atcgtacagc gagattctcg ccatggtcac cagaagggac      1200
     gacgacaagc tctcaggcct ggggagctgc gtcagcaagg tacgccgtac aaacaacgga      1260
     aacctgctgc tggaggtggc caaaggaagc accacgagcg ccgagtccat gaaggatagc      1320
     attgcgcagg tgctcggggg agaggcggaa gtacgatcat cgtccgagga gtcaaaagtg      1380
     gtggtcctcg aaatccgaga cctggacgcc ttgaccaaaa agtcggatat tgccgcggct      1440
     ctggcaaagc aatacgactt cgacgagggc aaggtcaaag ttcggagcat tcgccccgga      1500
     tactcggagt cccagattgc tgtaatcagc ttaccactca ccattgggaa ggtggtaacc      1560
     aaagggggcg tggtccgaat cggctggact atttgcagga tcaaagagcg gggaggcctc      1620
     ccgcggtgct acagatgtct ggagaccggg cacatcgcta gcaaatgcgt aagccgaatt      1680
     gaccgaagcg gttgctgctt caaatgcgga gatcagggcc acaaggctgc ccagtgctcc      1740
     aacaagtcgg cgtgtttcgt ctgcgcggcg gctggtagga aggatacgag tcaccaggct      1800
     ggaacaaaga attgcccgtc gaggaccagt ggtgcagccc cctcaaaagc gtcatgcaac      1860
     tgattcaact caacctgaat cactgcagga cggcgcagga cttgctgacg cagaccgtgc      1920
     gcgaagtagg gacagaggtg gcgattctaa gcgagcctta caggacagga accagcaggg      1980
     agtggatcgt agaccgcaca ggcaaagctg ctatctggtt gtgcggcttg gaagcaaccc      2040
     gactcagcga agtctgggct gcaaaaggct tcgtgcgtgg gctgatagac ggggtctggg      2100
     tatacagctg ctacctggcc ccaagcctaa ccctcgccaa atttacaaaa accatggacg      2160
     tgcttagcag cgacattcga ggtcgcagca acgtagtggt cggcggcgac ttcaacgcct      2220
     gggcccagga ttggggctca caaacgacaa acgccagagg acgcgtggta ctggaggcct      2280
     ttgccgcgct cgacataact ttgctgaacg agggtacaca gcaaacattt aaccgagccg      2340
     gagcgggatc gataatcgac ctcacgtacg cgagcagctc cctcgcgcgc caggcacgct      2400
     ggaggatcag cgacatcgac acgggaagcg accacgaagc catcctggtc tcaatcagag      2460
     agggatccgc gcacaggtcg acgcctccct tagcaaggaa ggcctaccgc caggacaccc      2520
     tcagtgtccc aggctttgcc gcagcgctgg aggacctgaa cctaaccggg atggattgcg      2580
     ccaacgacgc agcgaacaag ctggcagccg acacggagag agcctgcgat ataagtatgc      2640
     agcagcggaa aaagtatcgg aaacaccacc aacccgtttt ctggtggaac gaggaaatag      2700
     ccattctacg cgctagctgc cttcgactaa gaaggcaagt ccaaagagcc cgccactcct      2760
     tgagcctcga cgcctgcaac gacaggttca ggtccgccag gaaggccctc aaaaaggcca      2820
     taagagcgag taagagagag tgcttcctca agttgtgcga cgaagccgaa aaggatccgt      2880
     ggggcggagc gtacagaatg gtggtgaaac gagtgaacgc tggcaacaat gcacctacwg      2940
     atccggaagc tctggaaggc atagtgcgag tcctgtttcc aagggggcaa ccaataccag      3000
     cctccaggac gacggcgacc ggcgaaagcg acatctgtcc tgtcactgag caggaagtcg      3060
     ttgaagtggg aaggaagctg gccagtaaaa aggcacccgg cccagacatg gtccctagca      3120
     gagcaaccaa gctcctacta cacctgcacc ccgagaagat ggcagcgctc ttcaaccaat      3180
     gcctgacgga aggtaccttc cccgcgcgct ggaagcagca aaaactattg ctcctcgtca      3240
     agcccggcaa accagcaggg gatccctcct ccttcagacc gatttgccta ttggacacga      3300
     taggaaaggt cttcgagaag gtaatcgtga ccaggttgga ggcagcaatt gagcacgcag      3360
     gcggactgtc cccgagccag tttggcttca ggaagaagag gtcgaccctg gacgcgatca      3420
     caaaagtgaa aagccttgcc gagaaagcca tcgagggcac caggtggaaa ggtggcacga      3480
     aggagtactg cctagtggta acgctggata tccgcaacgc cttcaactcg gcggactggg      3540
     ggcggacgct ggaggcactg aaagcgttcc acgtccccga atatctgctg aaaatagttc      3600
     gcagctactt cgacagcagg gtcctccttc tggacacctc cgaaggcacc aggtcccacg      3660
     agatcaccgc cggagtcccg caaggatcag tactgggtcc actgctgtgg aacaccatgt      3720
     acaacggagt gctaaacctg tccctaccag acaacaccac aatcgttggt tttgcagatg      3780
     acgtcgcgct ggtagtggtg gcaaaagaga tttgcgatgc agaaatggca gccaacacag      3840
     cgatccgtgc agtcgaggca tggctagcgg tggcaggtct agagttggcc tcgcagaaga      3900
     cggaagccgt cctgatctca agcaggaaac aggtggatac agccaagata acggtcggcg      3960
     gaaacgagat cacttctcaa cgggcgatca gatacctggg ggtcatactg gacaccaggc      4020
     tctgcttcaa ggagcacctg gagtacgcac acgagaaggc gaacgcgact gccagagcct      4080
     tgtccaggat actcctcaac accagaggac ccaagcaagg gagaaggaag ctgcttgcga      4140
     gtgttgtgac gtcccagctg ctatacgcag ccgcagtgtg ggcagacgcc acggagctta      4200
     agagctacat gagaggagcc atatccacat atcgcctatg cgccctgagg gttgcctgcg      4260
     cctttaggac ggtttcggac gacgcggcac tggtcattgc tggccaagtg ccgctaccag      4320
     agctagtgcg cgaagcgaag gaggtccgcg acctaggcga gcccggggag caaggagcga      4380
     ggtccgaggc aaaatccgaa gccagagcca ggagcatgga aaggtggcag agcaggtggg      4440
     acaactccac aaaaggacgc tggacccaca agctcatacc ggacatcaga ccctggatag      4500
     gtcgaaagca cggggaggta gacttctacc tgactcaagt actcagcgga cacggatgct      4560
     tccgcgggta cctgaaaaag tacgggcacg acacggcaaa cggctgccca gagtgcggaa      4620
     gcggcgtcaa ggaggacgcc cggcacgtcc tattcgagtg tcacaggttc taccacgaac      4680
     gaaaggcact ccaagacgca acgggagtca gcgtggaggt ccacacactg gttccaacaa      4740
     tgctggtcag ccaggacttc tgggacgcaa cggcagaatt cgctgccaac atcatgaaga      4800
     cgttaagacg tctggagaga aggaggaacg ggcagatgga gtaggcggct gaagtcgcgc      4860
     gaagcaatgc tttgcggcag tcccgcgcga ccgagcttcc tatccaatcc aacatatatt      4920
     tttgttaatt acttgtaagt cagaccaaat aaaggaatat aaaaaaaaaa cacac           4975
//
ID   R1-3_DVi    repbase;    DNA;    INV; 2494 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2494
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1953-1953 (2012).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. All copies are inserted into (CA)n
CC   microsatellites, like Waldo elements. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(90..1526,1493..1963,1726..2226)
FT                 /product="R1-3_DVi_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="QTTWRGSSWETSRTRATYPCDLSMPRRMPNRRGAPCY
FT                 WWNEQISDLRKACLRARRRSQRARGHPDIASRLELLRAAKRDLKRSIKQSK
FT                 SSCFQKICDEADVNPWGTAYKIVTKKIRSQGTTQVTCPTALATIVETLFPQ
FT                 HPRLEVANXSLSTELVQQVSADDVLAASKKLGDKKAPGPDGVPNKALKLAM
FT                 LTKPDAFAETYTRCLQDCVFPKRWKRQKLILLPKGDKPIEEPSGYRPICLL
FT                 DTAGKVLERIVYDRLLSVVEEKEALSKQQYGFRKAMSTVDAIKAVVDVAAK
FT                 AIEGTRWRWGDKEYCAVITLDIRNAFNSASWSRILEALDRIGIPSSLFRII
FT                 SNYLSDRVLSYDTDDGARSYTVSAGVPQGSVLGPLLWNIMYDEVLRVQLPQ
FT                 XCRIIGFADDLALVXVGKEIEDVEAAANAAIRIVASWMRGASLELAGHKTE
FT                 AVLITSRKIVELARFQVDSVSIESKTTGLAFDRTVKDNRLSFRPHVDYVSQ
FT                 KAAKMQAALSRMLPNIGGPKAGRRLLLARVVASVLLYAAPIWASAVASQKG
FT                 LRRKMSIPYRLSALXTISGFRTVSDEAATVLAGMLPXDILAXEMEKIYMAR
FT                 IATGDAVSMGVIRSERXTSMATWQERWNTANKGDGHINAQCSXHHFWISDG
FT                 VGRGSHSIGRNAAXRYTGQXNGENLHGPNSHGRRCLNGRHPVGEXNINGNL
FT                 AGEMEHGEQGRWTHKLIPNLEQWIRRRNGEMNFHLXQFFTGHGGYRKYLHR
FT                 FRHEDSPECPNCPXLDEDPEHVLYQCSRYREVVGSVPPPEGLVAFMLEGXA
FT                 G"
XX
SQ   Sequence 2494 BP; 708 A; 598 C; 711 G; 465 T; 12 other;
     tggccccaaa tggatggaca acagcctaga cgaggaaacc tacacggact ccctacgtca        60
     tgctcaatgg acttgggcca cggagttagc agacgacatg gcgcggcagc tcatgggaaa       120
     catctcgaac gcgtgcgact tatccatgcg acttatccat gccaaggagg atgccaaaca       180
     gaagaggagc accttgctac tggtggaatg agcaaatcag cgacctaagg aaagcctgcc       240
     tgcgtgctag aaggcgctct cagcgtgccc gaggccaccc agacattgca tctaggctgg       300
     aactcctgcg ggcagccaag cgagacctca agagaagcat taaacaaagc aaatctagct       360
     gcttccagaa aatatgcgat gaggccgatg ttaacccgtg gggcacggca tacaagatcg       420
     tcacgaagaa gatccgcagc cagggaacaa cccaggtgac ctgccctacc gcacttgcca       480
     ctatagtgga gacactgttc ccccaacacc cacgactgga agtagccaac csctcactga       540
     gcacggagct agtgcagcag gtgtcggcag acgacgtgtt agcggcaagc aaaaaactag       600
     gcgacaaaaa ggctccagga ccagatgggg tgccaaacaa ggcgctaaag ttagcaatgc       660
     taacaaaacc agacgccttc gccgagacat atactagatg tctacaggac tgtgtattcc       720
     ctaagagatg gaagcgacag aaactaatcc ttctaccgaa aggggacaag ccaatagagg       780
     aaccctcggg atacaggcca atctgcctac tggacacggc gggaaaggta ctggaaagga       840
     ttgtgtatga ccgactactt agtgtcgtcg aagagaaaga ggccctgtcc aaacagcaat       900
     atggatttcg caaggcaatg tctacggtcg atgcaattaa ggcggtggta gatgttgccg       960
     ctaaagcaat agagggaacc agatggaggt ggggagacaa ggagtattgc gcggtgatta      1020
     cgttggacat ccgcaatgcc tttaactcag caagctggtc tcgtatactg gaagccttgg      1080
     accgaatagg gataccgtcc tcccttttcc gtataatatc caactaccts tccgatcggg      1140
     tattgagtta tgatacggat gacggtgcta ggagttacac ggtctcagca ggggtcccac      1200
     aggggtcggt gctgggacca ctcctgtgga acataatgta cgacgaggtg ctcagagtgc      1260
     aattgcccca gkgatgcaga atcataggat tcgcggatga cctagctcta gtaktggtgg      1320
     gcaaagaaat agaagacgtg gaagcggctg cgaatgcagc cataaggatc gtggccagct      1380
     ggatgcgtgg cgctagcctg gagctkgcag gccataaaac agaggcggtc ctcatcacaa      1440
     gccgcaaaat agtcgagctt gctagatttc aggtagacag cgttagtatt gagtcaaaga      1500
     caacaggctt agctttcgac cgcacgtaga ttacgttagc cagaaagcag ccaaaatgca      1560
     ggcggccctt tcgaggatgc tacccaacat aggaggacct aaagcaggta gacgcctgct      1620
     cctcgcgaga gttgtagcct ccgtgctgct ctatgctgca ccgatatggg cttcagcggt      1680
     tgcaagccag aaaggcctcc gaaggaagat gtcaatcccc tataggctca gtgctctgsg      1740
     caccatttct ggatttcgga cggtgtcgga cgaggcagcc acagtattgg caggaatgct      1800
     gccagwagat atactggcca asgaaatgga gaaaatttac atggcccgaa tagccacggg      1860
     agacgctgtc tcaatgggcg tcatccggtc ggagagagsa acatcaatgg caacttggca      1920
     ggagagatgg aacacggcga acaagggaga tggacacata aactgatccc caatctggag      1980
     caatggatta ggagacggaa tggcgaaatg aacttccacc taasacagtt tttcactgga      2040
     cacggcgggt ataggaagta tctccatagg ttcaggcatg aggactcccc agagtgcccg      2100
     aactgcccaa wtctggacga agacccggaa cacgtgctgt accaatgctc gaggtacaga      2160
     gaggtagtgg gctctgtacc tccaccggag ggactggtag cgttcatgct ggaaggakag      2220
     gcgggatagg ccgccataat aggcatccag agggatctga gacgatgcga aaaggagcga      2280
     cgactaatgg atactgccta aaataggcac ccatccccgc gaagtaatac tttgcggtga      2340
     tcccgcgggg aatgtggtgt gtgagtgggg ggtgagttta gtacgtaggt gctgacggag      2400
     tcagcaaatc gtgcatacgg ttggcccggg ccatcagtat cttacgaaga ttttcacctc      2460
     cgtgccgtaa gcaaaaaaaa aaaaaaaata aaaa                                  2494
//
ID   R1-3_DWi    repbase;    DNA;    INV; 5074 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5074
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1964-1964 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
CC   This family is inserted near (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           538..4884
FT                 /product="R1-3_DWi_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVGANAAEAVEEAAFRKSSRLGRTPPRVTAPPENGXQ
FT                 LIVAPASTQMVECSDAAPVAPPASNIPELDELGKLLGDLVEVFMTKAVRHV
FT                 NVNTKQAITRMKELQELLCQKVLDGQLTVCNERKSAESDQAPGEAKAVSRL
FT                 RGKPPLGDSPKRPRDEVVTQSCVPAKKQKSAHIGEIRTAKEPAAGGAEWQV
FT                 VAPKPRRHTKQRQRPNAIIVEKKGNMSYSDILKLVTRSEDAKLKAVGECVQ
FT                 KVRRTARGDLLLEIKGSADNLQRIKGDIDVALNGKAEAHTLTHRTRLEILD
FT                 MDDETTVDEIINAISAELSINLPHDAVKSLRPLRSGTQKAILCIPAHVAEI
FT                 LLKAGTVKVVFNVCRIRINETPVRCYKCLEIGHIAARCNRRVDRSKWCLRC
FT                 GQNDHKIKECHNKAKCFLCLEKGFDQLDHVSGARIALHGPSKVPRRCPTTK
FT                 KIRFLQINLNHCEAAQALLTQTVLELNTDAVLISEPYRCSEDSNWSRSLSS
FT                 KAAIWTCNVRSQRCSQYSVWAAEHFVRAHINDFWVYSCYLPPSLSLEGYSK
FT                 SLDDLITDIRNHNRVIVGGDFNAWAVEWGSPFTNARGRVLLETFAAADVVL
FT                 LNSGSQFTFRRAGMGSIIDLTFTSSGLYPSSSWKISDTYTASDHEAIVFAV
FT                 EEPGRPPNANDTQDKKYKINTLNLQEFTAALNSCDWEQDEAEVMAHRISKM
FT                 VERACDAGMQQCGAYTRHHKSVYWWNQNISDLRKKCLAARRRYQRARRRDA
FT                 ENWPQLQHEFSSARTTLKHTIWATKREIFLRLCDSAEQDPWGKAYKIVVKR
FT                 IYANRNHTPLEAEQLSSIVTELFPRKDNSLHSRRPATPAAGSYVTEPVSIQ
FT                 EIVAATSQLKPSKAPGPDAIPNRALKLAMALRPDSFLETYNKCLDEGVFPT
FT                 IWKRQKLVLIPKPGKPAGTASSYRPICLVDTMGKVLEGLICTRLHRAINAG
FT                 GDLSSNQFGFRKAKSTVDAIGKVVSIAAAAIEGTRWKLGTKEYCLIVTLDV
FT                 RNAFNTADWGCILDALYNFGVPEYLRAIIWSYFEDRQLCFSTTNGQSSYSV
FT                 SAGVPQGSVLGPLLWNIMYDGILRLNLPAGCETVGYADDVALVIVAKEVAK
FT                 AEALANEAILLITEWLRSVGLQLAAHKTELVLISSRKRVETASVSVXGSII
FT                 CSKRAIRYLGVWLDTRLCFREHLEHVHAKALESARALARIMLNTRGPRQER
FT                 RLLLSSVTTSIILYAAQVWADAVKTESYTRGIRAAYRLSALRVCCGFRTIS
FT                 DDAALVIAGMVPIELQVEEARLVASSLEDGPSRREKRADARRRSIATWQQR
FT                 WDQSSKGRWTHRMISDVRAWIGRQHGAVNFHLTQFISGHGCFRYYLHRFGH
FT                 DASPFCPSCGDGVIEDAEHVMFECNRFSGEREVLFQEVGTTLTVGNLIEEM
FT                 ISSPRKWDAVNSFAANAMRDLRLAERRRAGVEVRH"
XX
SQ   Sequence 5074 BP; 1352 A; 1190 C; 1375 G; 1149 T; 8 other;
     gagtctgagt tcgcggttgt ctttgcggat gctcccagtt ttagtgtawm aatcggcctc        60
     caaagaatct gtgaatcgtg gaatctgttt aggactwgct tcggagtstc tagctacgta       120
     ccactgttgg tgtctgcgcc tcaacgcggt gctggccaaa ttttcgtttg gtacccccat       180
     amgtttggmc cggtcattgg gccaaggggg ggtggcgttg ctctcttgct tgctggtttt       240
     cccgcctctc atcctctgga ctcctgcctg tgtgagtgtg tcgtggaatt atccgcaaat       300
     ttccccaggc cgttccacat ttcttgttgc tgcaagaatc tgcttcttct tccccgatcg       360
     tttgtcagct gaccaaggcc agtgttgggg aacgcagggg tcgggccctt gtatctgaca       420
     gagggcgcca gggagttttt gggcggttct ttcgccaatt tgaaaattca aattcaaatt       480
     ttagagtaac ggatagcgcc tgaccgttaa accttgtctc agtagtgcca atccagtatg       540
     gttggtgcga atgctgctga ggcagtggaa gaggctgctt tcaggaagag ctcacgtctg       600
     ggccggactc cgcctcgggt tacagctcca ccagagaatg gccmgcaact aattgtggca       660
     ccagcgtcaa cgcaaatggt cgagtgctcg gatgcggcac cggtagctcc accggcatcg       720
     aatatccctg agctcgacga attgggtaag ctccttgggg atttagtaga ggtgttcatg       780
     acaaaggctg tccgacacgt caatgtcaac accaaacaag ccatcacaag aatgaaggag       840
     ctgcaagaac tcctgtgtca aaaggtgctc gacggccagc tgaccgtctg taatgagaga       900
     aagtctgctg agtcagatca agcgcccggc gaggccaagg ccgtgagtag actccgtggt       960
     aagcccccac tcggcgattc tcctaaacgc ccaagggatg aagtggtgac tcaaagctgt      1020
     gtgccagcaa aaaagcaaaa aagtgcacat attggagaga tcagaactgc aaaagagcct      1080
     gctgctggcg gtgccgaatg gcaagtagta gctccaaaac cgagaaggca tacaaagcag      1140
     aggcagcgac caaatgctat catcgtcgaa aagaagggca acatgtcata tagtgacatc      1200
     ctaaaactgg tgacgcgtag cgaggatgcg aagctcaaag ccgtcggcga atgtgtccaa      1260
     aaagtgagaa gaacagcaag gggcgacctt cttctagaga tcaaaggtag tgccgataat      1320
     ttgcagcgga ttaaaggaga tatcgatgtg gcgctgaatg gcaaggccga agcccatacc      1380
     ctcacccacc gtacccggct ggagattcta gacatggatg atgaaacaac cgtagacgag      1440
     atcatcaatg cgatttctgc tgaactgagc ataaatctac cccatgatgc tgtaaagagt      1500
     ctgcgtccgc tgcgctcggg gactcagaaa gccattctgt gtatcccagc acacgtggcg      1560
     gagattttgc ttaaagctgg taccgttaaa gtcgttttta acgtatgcag gatccgcatc      1620
     aatgagaccc cagtgaggtg ctataagtgc ctggaaattg ggcatatcgc agccaggtgc      1680
     aataggcgag tcgacagaag caagtggtgc ctgagatgtg ggcagaacga ccacaagata      1740
     aaagagtgtc acaacaaggc taaatgtttt ttgtgcctag aaaagggttt tgaccagttg      1800
     gaccacgttt ccggggccag aattgccctg catggaccaa gcaaagtccc aagacggtgt      1860
     cccaccacaa agaagattag atttttacag ataaatctaa accattgcga ggcggcgcaa      1920
     gcattgctaa cgcaaacagt gcttgagcta aacacagacg cggtgttaat tagcgaacct      1980
     tataggtgta gcgaggacag caactggagc aggagcctct catccaaggc ggctatctgg      2040
     acgtgcaacg tgcggtcgca gcgttgctcg cagtattctg tgtgggcagc tgagcatttt      2100
     gtgcgtgctc atataaatga cttttgggtc tacagctgct atttgccacc aagcctctcg      2160
     ctggaaggct atagtaagtc attggacgat ctgattacgg atataagaaa ccacaaccgc      2220
     gttattgttg gcggcgactt caacgcgtgg gcggtagagt ggggcagccc ctttaccaat      2280
     gcaagagggc gtgtactttt agagacgttt gctgccgcag acgttgtcct attaaacagc      2340
     ggctcccaat ttacgttcag gcgcgcagga atgggatcaa ttatagatct cactttcacc      2400
     agcagcggcc tttatccatc gtcgtcatgg aaaataagcg atacttatac tgcaagtgac      2460
     cacgaggcca tcgtttttgc agtggaagaa cctggccgcc caccaaatgc taatgatact      2520
     caagataaaa aatataagat aaacacgctt aacttgcagg aatttacagc ggcactcaat      2580
     agctgcgact gggaacagga tgaagcagag gttatggctc accgtatctc caaaatggtc      2640
     gagagagcat gcgatgcggg catgcagcaa tgtggtgcat acacaaggca ccacaagtct      2700
     gtatattggt ggaatcaaaa catcagcgat ttgcgaaaaa agtgtcttgc agccaggaga      2760
     cgataccaaa gggctagacg ccgtgatgct gaaaactggc cgcagctgca gcacgaattt      2820
     agctcggcaa ggacgacatt aaagcacact atttgggcaa ctaagaggga aatttttcta      2880
     agactatgtg actcagcaga gcaagacccc tgggggaagg cgtataaaat cgtcgtaaag      2940
     cgcatatatg caaatagaaa tcacacacct ttagaagcgg agcaacttag ctccatagtc      3000
     acagaattat tcccgcgtaa ggataactca ctccatagta gacgtcccgc cacaccagct      3060
     gcaggaagtt atgtcactga acctgtgtca atacaggaaa tcgtggccgc aacaagccaa      3120
     ctaaagccga gtaaggcacc aggaccagat gccatcccca accgggccct caagctggca      3180
     atggcgctgc gcccagactc atttttggag acatacaata aatgcctaga tgaaggagtt      3240
     ttccccacga tctggaaacg gcaaaaattg gttctgatcc cgaaaccagg gaaacccgca      3300
     ggaacggcct catcttacag gcccatctgc ctggtggata ctatggggaa agttctagag      3360
     ggtcttatat gtacccggct tcacagagct ataaatgccg gaggggacct atcgtccaat      3420
     caatttggat ttcgcaaagc caaatcgacg gtcgacgcca ttggcaaggt tgtcagtata      3480
     gccgcggcag ccatagaagg cactcgatgg aagctcggga cgaaggagta ctgtctgatt      3540
     gtcacgctag atgttagaaa tgctttcaat actgcagact ggggatgtat tttggatgca      3600
     ttatacaact ttggagtccc agagtatcta cgcgcaatta tctggagcta cttcgaggac      3660
     aggcaactgt gcttcagcac aacaaacggc caatcatcat actcggtttc cgcaggggta      3720
     ccccaaggct ccgttttggg gccgctgttg tggaacatta tgtatgacgg gatccttcgc      3780
     ttgaacctgc cggctggctg cgaaaccgtt ggatatgctg acgatgtagc tctggtcata      3840
     gtggcaaaag aagtcgcgaa agcggaggcg ttggcgaacg aggcgatctt gctcatcaca      3900
     gagtggctgc gttcggtggg cctacaacta gcagcgcaca aaacggagct tgtcctaata      3960
     agcagcagga aacgggtcga gacggcatcg gtcagtgtas agggctctat catatgctcg      4020
     aagcgggcta ttcggtacct tggagtttgg ctggatacgc ggctatgctt tcgagaacat      4080
     ctggagcatg tgcacgcaaa ggctctggag tcagcgaggg ctttagcgag aatcatgctg      4140
     aacacccgcg gccccagaca agaaagaaga ctgctactct ctagcgttac aacatccatc      4200
     attctctacg cggcacaggt atgggcagat gcagtaaaga cagagagcta taccagaggt      4260
     atccgggcag catatcgtct cagcgcgctc agggtatgtt gcggtttcag gaccatctcc      4320
     gacgacgccg cactggttat tgcgggaatg gttccgatcg agctacaggt agaggaagct      4380
     cgactagtag catcttcgct cgaggatggg ccatctagga gggagaagag ggctgacgct      4440
     agaaggagaa gtatagccac ctggcagcag aggtgggatc aatcctccaa ggggcgttgg      4500
     acccacagaa tgatttcaga tgtacgtgcg tggattggta ggcaacacgg tgccgtaaat      4560
     ttccacctta cgcaattcat cagtgggcat ggatgtttta ggtattacct acaccgtttc      4620
     ggacacgacg catccccctt ctgcccgtcc tgcggggacg gcgtcattga ggatgcagag      4680
     catgtaatgt ttgaatgcaa tcgcttctct ggcgaacggg aggtgctatt ccaagaagtg      4740
     ggtaccaccc tcacagttgg taacctgata gaggagatga tctcgagtcc acgtaagtgg      4800
     gatgcggtaa actccttcgc agctaacgcg atgcgcgatc tgcgattagc cgaacgccgg      4860
     agggcagggg tggaggtacg gcattaaaaa caactcgact gctgtgaagc attacctttc      4920
     ggccgtcccg cagcagttct tgtcattttt cttgtatatt actgtagtgt acgtattgca      4980
     tcttaatgta ttgtacgtat actgtatgtt gcctcactgt tatatgtaat taatttgtta      5040
     aataaataga attaaaaaaa aaaaaaaaaa aaaa                                  5074
//
ID   R1-3_DYa    repbase;    DNA;    INV; 5479 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5479
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1935-1935 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           849..2402
FT                 /product="R1-3_DYa_1p"
FT                 /translation="MSVNNITTPGGNHLVGNPPVVNPTAGARILEAPNHVL
FT                 NQPGEVVASLAASTVIATSKHYSEMDNAGAFQSSKKILRSPILPRSPGPPQ
FT                 TGGSVLAEMGDGQDTPKRARTPSSPSGSSRSTPPKRTKADGQIRCADKLSE
FT                 IGRVLDQLINLTNVKQVRHINVQMKAMFARMKALQEDASRGLDMEDEQRHA
FT                 LPGCPKCGDKRMKTEQKSQQTTPRRKRDSFAQTDQTAKGKKPVDKRASPPR
FT                 QQAKAAEQIPAQPAGAPSRGKPDTWTKAETRKKARLARRPDAVIVEAKGKT
FT                 YSEVLALVTRRSDGQLQELGRNVHKVRCTASGNLLLELSRDGEKSASLMKS
FT                 DLEAVLDGVASVRALTQDSRLQFLSICDLDPLVAKEDLSKALVDQFQVEAS
FT                 SIKLKSLRPSFRDTQTAVVGLPCSEAQAVLAKGKLKVGWTVCRVKESDSRP
FT                 RCFKCLELGHIAARCKSPANRSDCCLKCGQTGHKIASCTQEAKCFLCTSAR
FT                 RADARHIAGSRRCPMSTKPPRK"
FT   CDS           2372..5383
FT                 /product="R1-3_DYa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSYEHQATEEMKIVQINLNHCEAAHHLLSQTMREVQA
FT                 DVALISEPYRKTPGSDYILDGTGSAAILINGTSRPRNLRIGSFFVRGLVGD
FT                 LCLYSCYLPPRLSLPEFSAVIDELANDARGERNVVIAGDFNAWAEEWGSVH
FT                 TNARGRTLQEAFASMDVALLNTGTEHTFSRAGAGSVVDLTYCSGSLFQRAQ
FT                 WSISDAYTASDHKAIICDITSRGSFTAPSAKRHFNPKTLQRDAFLREFGSP
FT                 DIGENAAASAISLTRAVERACIASMRVSRSHHRHREPVYWWTDEIAEARRT
FT                 CLRARRRQQREHGHPNNETLRQEYADNRRALKRLIKQSKRRCFLELCDSAE
FT                 QDPWGSAYKIVVKKLSQAKPLKTGDAATMTAIVEHLFPIVPSDPQPPHAAP
FT                 GDLSQIALRPXEIREVAKDMPSGKAPGPDGIPDIAVKLGMXEHPEAFAAVF
FT                 NQCLTEGFFPERWKRQKLVLLPKPNKPPEDPSSYRPICLIDHMGKAFERCI
FT                 SLRLHEAISAAGDLSEMQFGFRKARSTVDAIATVKEIASKAIEGTRWHGGS
FT                 KEYCLVVTLDIRNAFNTARWGVTIRALQHLGVPDALVGIVKAYFSDRVLLY
FT                 DTDGGTLEHRVTCGVPQGSVLGPLLWNAMYDGVLRLSLPGRTKVIGFADDI
FT                 AVVIVAKTVKEAESLANAAIGIIVEWLLAVGLDIAHHKTEAVLISSRKQVE
FT                 TATIRVGDTTVTSARAIRYLGVLLDTRLTFKEHLAEANRKASSVARALARI
FT                 MLNCRGPRQGRRLLLQSVCRATALYAAPIWAEASEKRSYIRGLESTHRLCA
FT                 LRVCSGFRTISDDAAQVIAGTLPIDLLALEAKEIHHEVKKIVGQCSSAQKR
FT                 AIKANARTNSLERWQRRWQQSTKGRWTFRIIPDVVAWTRRRHGEVNFWLTQ
FT                 MLSGHGCFRSYLARFGHDDDSHCPECGVDETAEHIIFNCQRFDRDREGFME
FT                 DVTDPSTLGERMISDQTFWGQISNFAAVAMKRLRVAERERAARRQQDPS"
XX
SQ   Sequence 5479 BP; 1431 A; 1488 C; 1630 G; 909 T; 21 other;
     ggtggatgtg aagtgtttga tgacggacgc gtcgcgttag cgctcccgga aaaaccccaa        60
     aatttccgcg ttgagccagc gtggacgcgc caatgggtga cggcswgcat tggcgtcgcg       120
     gccccagtca cttacccgcg gaagactgct ctccagakgt ccatggactg ccagmcggac       180
     ccgatctcca ggsccatggg acaggtcagg gtgagaaaat tcgaagcttt ctcttccggt       240
     ttttctcttc cgtccgcttt tccwtgtgtg caatwagaga tgcactgtca caccagctga       300
     tctcacwctc agctgctmag ccagtgttgg maaacggmtc aggctaccgg tctggcagcg       360
     ctgcacagcc gaaggcgacc ccaaccacag gtggcgcttc tagggaaatg ctactggtca       420
     gaagcaaatt gctacataac tagccaaacg atctcgtctc taaacgtagc acactttcct       480
     gggctgctga cgagwatcct tgscagcaac gcatggaatc cttgcgaaaa tagcaccaac       540
     aagwtggggc taggaataag aggtgtcaaa ggtcaaggag cggaccaaca gccaaccccg       600
     ccgctaacgc ggtacaccga aaaacggggc tctggcgacc gagcaggagc ggtataactc       660
     ccaccgaata aaaacccttt ccccttcaca cccctctcac caaaaatcca cggagcgtct       720
     gacccagagt gggcggctac gtggtctgcg tctgcgccat agtggccggc agtaaatcca       780
     accctggcag aagggataaa tctgcaacat aaacctggca gtagggataa aatgcatcca       840
     agtgaggaat gtcggtaaat aacattacta ctccaggtgg caaccactta gttggaaatc       900
     cacccgtggt taatcccacg gcaggggcac ggattctgga ggccccaaac cacgttctaa       960
     accaacctgg cgaggtggtg gcaagcttgg ccgcctcgac agtgatcgca acaagcaaac      1020
     actatagcga aatggacaac gcgggagctt ttcaaagcag taaaaagatc ttgcgttcgc      1080
     cgatcctgcc aagatcacct gggccaccac agactggtgg gtcagtcctg gccgagatgg      1140
     gagatggwca ggacacgccg aagcgggcaa ggaccccgag cagcccctcc ggctcgagcc      1200
     gcagtacacc tccaaagagg acgaaggcgg atgggcaaat ccgctgcgcc gacaagctat      1260
     cggaaatcgg acgggtcctg gatcagctga taaacctgac caacgtgaag caggtgaggc      1320
     acataaacgt gcagatgaag gcgatgttcg ccaggatgaa ggccctccaa gaagacgcca      1380
     gccgggggct ggacatggag gacgaacagc gccacgccct cccagggtgc cccaagtgtg      1440
     gggacaaacg aatgaagacc gagcaaaagt cgcagcagac cacccccagg cgaaaaaggg      1500
     acagtttcgc gcaaacggac caaacggcaa agggaaagaa gcckgtggat aagagagcga      1560
     gccccccaag acagcaggcg aaagcagcgg agcaaatccc ggctcagcca gcgggagccc      1620
     caagccgtgg gaagccggac acgtggacga aggcggagac taggaagaag gcacgcctag      1680
     cgcggagacc cgacgctgtc atagtcgaag cgaagggaaa aacctacagc gaggtcttgg      1740
     ctttggtcac caggcgaagc gacggacaac tgcaggagtt gggaaggaac gtgcacaagg      1800
     ttcgctgcac agctagtggt aacctcctgc tcgagctaag cagggatgga gagaagagcg      1860
     catcgctaat gaagagcgat ctggaggcgg tgctggatgg agtcgcatct gtgcgagctc      1920
     tgacgcaaga ctcgaggttg caattcctct cgatctgcga cttggaccca ttagtcgcta      1980
     aagaggacct gtcaaaggcg ttggtggacc agttccaagt tgaggcaagc tcgattaagc      2040
     tgaaaagcct ccgaccttcc ttcagggaca cccaaacggc agtagtgggc ctgccgtgca      2100
     gcgaggcaca ggcggtcctt gccaagggaa agctgaaggt gggatggaca gtctgtagag      2160
     tcaaggagag cgactccaga cccaggtgct tcaagtgcct tgagctcggc catattgcag      2220
     cgcgttgcaa gagccctgca aatcgcagcg actgctgtct caagtgcggg caaaccgggc      2280
     acaagatcgc tagctgcact caagaggcca agtgcttcct atgcaccagt gccaggagag      2340
     ccgacgctag gcatattgcg ggcagcagga gatgtcctat gagcaccaag ccaccgagga      2400
     aatgaagatc gtccagatta acctaaatca ctgcgaagcg gcgcaccacc tgttgagcca      2460
     aaccatgcgc gaagtccaag ccgacgtagc gctaataagc gagccgtata gaaaaacccc      2520
     cgggtcagac tacatattgg acggtacagg aagcgccgcg atcctgatca acgggacaag      2580
     ccggccaaga aacctgcgca ttggctcatt ctttgtaagg gggctggttg gcgacctgtg      2640
     cctgtacagc tgctatctac caccacgcct ttcccttccg gaattttcgg cagttattga      2700
     tgagctggct aacgacgcaa gaggcgagcg aaacgtggtc atcgctgggg acttcaacgc      2760
     ctgggcagag gagtggggct cagtccacac gaacgcaaga gggcgaaccc ttcaggaagc      2820
     cttcgcgtct atggacgtag ctctcctgaa cacggggacg gagcacacct tcagccgagc      2880
     tggagcaggg tcggtagtag acctgaccta ctgcagtggc tcgcttttcc agcgcgcaca      2940
     atggtccatc agcgatgcat atacggcaag tgaccacaag gcgattatct gcgacatcac      3000
     cagcagagga tccttcacag ccccatcagc gaagaggcac ttcaacccaa agacgctcca      3060
     gcgggacgcg ttcctgaggg aatttgggag ccccgacatc ggtgagaacg cagcggcaag      3120
     cgcaatcagc ctgactagag cagtcgagag ggcatgcata gcaagcatga gggtgtcaag      3180
     gagccaccac cgccaccggg aaccagtcta ttggtggacc gacgagatcg cggaggctcg      3240
     cagaacctgc cttcgggcaa gacggcggca gcaaagggag cacggccacc ccaacaacga      3300
     gactctgagg caagaatacg ctgacaatcg aagggcctta aagagactca tcaagcagtc      3360
     gaagaggaga tgcttcttgg agctatgcga ctcagccgag caggaccctt ggggntcagc      3420
     ttataaaata gtggtaaaaa agttaagcca ggcgaaacca ctaaaaacag gcgacgcggc      3480
     cacgatgaca gcgatcgtgg aacacctgtt tccaatagtg ccctcggatc cgcaacctcc      3540
     tcacgcggct ccaggcgact tgtcgcagat agcgctccga ccggakgaaa tacgcgaggt      3600
     cgcaaaggat atgccttcgg ggaaggcgcc agggccggac ggwatcccag atatcgccgt      3660
     caagcttgga atgwacgagc acccggaagc attcgctgcc gtcttcaacc agtgtctcac      3720
     ggaaggcttc tttccagagc gctggaagag acagaagctg gtactgctcc ccaagcctaa      3780
     caagcctccc gaggacccat cctcatacag accgatatgc ctgatcgacc acatgggcaa      3840
     ggctttcgag cgctgtatca gcctcagact gcacgaggcc atctccgctg caggggacct      3900
     ctcggaaatg cagttcggct ttaggaaggc gagatcgaca gtggacgcta tagcaacggt      3960
     caaggagatc gcctcgaagg caattgaagg cacaagatgg cacggaggca gcaaggagta      4020
     ctgcttggta gtaacattgg atattagaaa tgcgttcaac acagcgagat ggggcgtcac      4080
     cataagagca ttacagcacc taggggtacc ggacgctctg gtgggcatag tcaaggccta      4140
     cttcagcgac agagtgctac tgtacgacac agacggaggc acacttgagc acagggtgac      4200
     ctgcggggtc ccccaaggtt cggtactcgg gccgctgctg tggaacgcaa tgtacgatgg      4260
     tgtgctacgg ctgtcactac cagggagaac caaagtgatt ggcttcgctg acgatattgc      4320
     cgtggtaatc gtagcaaaaa ccgttaaaga agccgagagc ctcgcgaatg cagcaatcgg      4380
     catcatagtg gagtggctct tagcggtcgg cctggacatt gctcaccaca aaacggaggc      4440
     agtgcttata tctagccgca agcaggtaga gacagccacc atccgagtcg gagacaccac      4500
     ggtcacgtcg gcgcgagcga ttcgatacct aggggtcttg ttagacacta ggctaacgtt      4560
     caaggagcat ctggcggaag cgaacaggaa ggcgtcgagc gtcgctaggg ctctagcgcg      4620
     aataatgctc aactgcaggg gcccaagaca gggacgcaga ctactcctac agtccgtctg      4680
     cagggcaaca gcgctgtacg cagccccaat atgggcggaa gcttcggaga agaggtccta      4740
     cataaggggc ctggaatcga cgcacaggct gtgcgcccta agggtgtgct ccggctttcg      4800
     gacaatctcc gacgacgcag cccaagtcat agcgggaact ctgcccatag acttgctggc      4860
     cttggaggcg aaggagatac accacgaggt gaagaagatt gtgggacagt gcagctcggc      4920
     ccagaagcga gccataaaag ccaacgccag aaccaacagc ttggaaaggt ggcaaagacg      4980
     gtggcagcag tcgacgaagg gamgatggac ctttaggatc atcccggatg tggtcgcatg      5040
     gacgcgaaga cggcatggcg aggtaaattt ttggctcacc caaatgctaa gcgggcatgg      5100
     atgcttcagg agctacctgg ctaggtttgg ccacgacgac gacagccact gcccagaatg      5160
     cggcgtcgac gagacggctg agcacataat ttttaattgc cagcgatttg accgcgacag      5220
     ggaaggcttc atggaggacg taacggaccc ttctacccta ggggagcgca tgatctcgga      5280
     tcagacgttc tggggtcaga tcagcaactt cgctgcagtg gcgatgaaga ggctgcgggt      5340
     agcggaaaga gagagagccg ctcggagaca acaggatcct agctagggaa aaatgagcgc      5400
     atcctggccc tgcgaagcat agcctcgcgg tagtaccgca gggactccag gatttctcgc      5460
     accacacaac accttacaa                                                   5479
//
ID   R1-3_LMi    repbase;    DNA;    INV; 4376 BP.
XX
AC   .
XX
DT   05-JAN-2015 (Rel. 20.01, Created)
DT   06-JAN-2015 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4376
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 268-268 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           234..839
FT                 /product="R1-3_LMi_1p"
FT                 /translation="TQNKADRLCVGGVIDSMVNTHLHKTNAHQYINTQPNL
FT                 EAPTTTTNTEITHNDITHTDKVDTTVSDSNTTQPTNLVIELDLDKRRRAEY
FT                 ELDYRTMEENAKLSRLENPHTFQAALRQVTRQMHPKGANVCYPIAEQTDRL
FT                 VLKALNLPTDGLGLCDILRKACSRRGESFNLEEAYRDMARAYGRVYLDPTL
FT                 EGPRCMVWTHYP"
FT   CDS           883..3876
FT                 /product="R1-3_LMi_2p"
FT                 /translation="MELTRLIEEQEVDIVCLQEPHLRNGKITGMPHKYTTI
FT                 HHTDAMAAIIVTNPQYTITQISHLCTTHLVTVEVIIGRTKWVVASMYAQYS
FT                 HDIEPYLHYIDCLXNITNNRHLIIATDINAWSTRWFSNTTNVKGEMVNQHL
FT                 DLNNLFVANSPNQPPTYRGPGGTSSRIDITVVNSKTLPLVTGWRVLDGAIH
FT                 SDHNPIIIHITSTRTHIDETQRRLCFNKADRSKLQHIIEDAHINELXGSVD
FT                 LRAHALTTILQTAQNSSVPTAKLNKNRSPWNNRLTALRQDSRRKRTWYQRA
FT                 KTEQEKRYWQQLYLTAKKTYKDALLQTRQQHWNTHIEQQIQTNIWGEPFKI
FT                 CTERIKTPFVLSTLKREDGTNTEGWRSSAEYLLNKLLPDDTNTDDDAFHTT
FT                 LRHNTNTEYDNNAVTIPFAQEEVAIAISKLKNRKAPGPDGVYSETIKMAAP
FT                 QIIPFMTNLLNDALRLGRVPAPWKLANAVIIKKAPDKDPLNPKSYRPICLI
FT                 NNLAKIQERLLCERIQSHRELLGLNPTQYGFRRGKSIDDALHAATDMVHST
FT                 TLKYALAILVDIAGAFDNLWWPALFTRLRELRVPKALYNSLLDYCKNRAVE
FT                 WRKDSQKVVKQITKGCPQGSICGPVFWDITFEPLLNLLGQQELVKGTVAYA
FT                 DDLLVLVTADSRMQLEHKATHVLATIGQWCTQNKLQMAAHKTVYILLKGTL
FT                 IRDPTIKHNNIKIRRKHNTRYLGVQLDERLTFNVHIRLTTDRATKMTQKLA
FT                 RLNTTTYRLPTQTLRTYHIALFESVICFAASSWAQRLALQTNIATVRKGQR
FT                 SVLLRLTGAFNTTSDEALCVVLGIPPIDLTIRLRAAMYWLKAGKYDKVHEL
FT                 VGQEITERRQLIKWRMDTWQREWENCEKGRRVYDFFPNIRERLRMGHINPS
FT                 RGMIHFLTGHGPYPTHLTRVGLSDNPCCTCGEIGTPEHTVIHCQLYKTHTH
FT                 TMFDTTKDLNELIRDKNGWDIMNRLTDEVSLRKKARVHTERKT"
XX
SQ   Sequence 4376 BP; 1540 A; 1091 C; 847 G; 894 T; 4 other;
     caccaaagga gcagaaccat cactacacac agacagtaac atagattaca taaaaacaga        60
     ggatcttttc caatcaacct aaaaaagtag ccaaagagta gtgaaaaaaa ggaaggctag       120
     aaaaacagat gagaacatac aggaggatga aataaatagt accccaaaga aataacatca       180
     ctaaaagact cactctaaac gcttcacacc aaaaatatat gtgacaaatg taaacacaaa       240
     ataaggccga tcgcctttgt gtcgggggcg tcattgactc aatggtaaat acacacctgc       300
     acaaaacaaa tgcacaccaa tacatcaaca cacaaccaaa cctggaggca ccaacaacga       360
     caactaatac agaaattact cacaacgaca taacccatac tgacaaggtt gacaccactg       420
     tatctgactc taataccaca caacctacaa acttagtaat agaattagac cttgacaaac       480
     gacgacgagc tgaatatgaa cttgactacc ggacaatgga ggaaaatgca aaactatcaa       540
     gactggaaaa tccacatacc tttcaggcag ccctaagaca agtgacaaga caaatgcacc       600
     ctaaaggagc caatgtctgc tacccaatag cagaacaaac tgacagacta gtcttgaagg       660
     cactcaatct ccccacagac ggacttggac tctgtgacat ccttagaaag gcttgctcca       720
     ggagaggcga aagcttcaac ctggaggaag cctaccgaga catggctagg gcatacggga       780
     gggtgtacct agatcctaca cttgagggtc ccagatgcat ggtttggacc cactacccat       840
     gaaaattcta caactaaatg cacaaggtag tacatcgcct gtatggaact aaccaggtta       900
     atagaggaac aggaagtgga cattgtgtgc ctccaggaac cacacctaag aaacggcaaa       960
     attacaggaa tgcctcacaa atacacaacc atccaccata cggacgctat ggcagccata      1020
     atcgtcacta atccgcaata caccatcaca cagatatctc acctctgtac cacgcacctt      1080
     gtcactgtgg aagtaatcat aggaaggact aagtgggtag ttgcctcaat gtatgcgcaa      1140
     tattcgcacg acattgagcc ctacctacac tacatagact gcctakccaa cattactaat      1200
     aacaggcact taatcattgc cacggacata aacgcctggt ccactcgttg gttctctaac      1260
     acaactaatg tcaaagggga aatggtcaac caacaccttg acctcaataa cctattcgtg      1320
     gctaactcac ccaaccaacc gcctacttac agaggaccag gtggaactag tagtcgtata      1380
     gacattacag ttgtcaactc caaaaccctt ccactagtga cggggtggcg ggtacttgac      1440
     ggtgccatcc atagcgacca caatcccatc ataatacaca taacatctac acgtacacac      1500
     atcgacgaga cacaacgacg actgtgtttt aacaaagcgg atagaagcaa attacaacat      1560
     ataatagagg acgctcatat aaatgaacta akgggatcgg tggacctaag agctcatgct      1620
     ctgacgacca tattacagac agcgcaaaat tcctccgtac cgactgcaaa actgaacaaa      1680
     aatagatccc cttggaacaa cagactaact gcactaagac aggactcaag acgtaagaga      1740
     acatggtacc aaagggctaa aaccgagcaa gaaaaacgat actggcaaca actctatttg      1800
     acagccaaaa agacttacaa agacgcactc ttgcagacma gacaacaaca ctggaacaca      1860
     cacatagaac aacagataca aacaaacata tggggagaac cttttaaaat ttgcacggag      1920
     cgcatcaaaa caccttttgt tctatcgaca ctgaaacgtg aagacggcac aaacaccgag      1980
     ggatggagaa gttcagcaga atatctgcta aacaaactcc tacctgacga caccaacaca      2040
     gatgatgatg cgttccacac aacactcaga cacaacacca acactgaata tgacaacaat      2100
     gccgtcacca ttccttttgc acaggaagag gttgccattg caatctccaa actaaaaaac      2160
     aggaaagcac caggccctga tggagtttac tcggaaacca tcaaaatggc cgcaccacag      2220
     atcataccct tcatgaccaa cttattaaat gacgccttac ggctgggacg ggtacctgct      2280
     ccctggaaac tggcaaatgc agtgatcatt aaaaaagcac ctgacaagga cccactgaac      2340
     cccaaatcct ataggccaat ttgcctaatt aacaacctgg ctaagatcca ggaacgtctc      2400
     ttgtgcgaac gtatacagtc gcacagggag ctactaggac ttaatcctac gcagtatggt      2460
     ttcagacgag gcaagtcaat tgatgacgcc ctacatgcgg caactgatat ggtccactca      2520
     acaacactca aatacgcttt ggccattctt gtggatattg ctggcgcctt tgataatctt      2580
     tggtggccgg cactgttcac aagactacgg gagctaaggg tacctaaggc cctttataac      2640
     agtcttttag actactgcaa aaatagggca gttgaatggc gtaaggactc tcaaaaggta      2700
     gtaaagcaaa tcaccaaagg gtgcccccag ggatcgatct gtggacccgt cttctgggac      2760
     ataacctttg aaccactcct gaacctactg gggcaacagg agttggtcaa aggcactgtc      2820
     gcgtatgcag atgacctact tgttttggtt acagctgact cgagaatgca attagaacac      2880
     aaggcaacac atgtcctggc aactatagga caatggtgca cacagaacaa attacagatg      2940
     gcagcacata agacagtcta catattacta aaaggaaccc taatcaggga cccaacaata      3000
     aaacacaaca acatcaaaat acgcagaaaa cacaatacac gttatcttgg tgtccaattg      3060
     gacgaacgct tgacctttaa tgtacatata cgactgacga ccgacagggc caccaagatg      3120
     actcaaaaac ttgccaggct aaacaccaca acgtacagac tacctacaca aacactacgt      3180
     acataccaca tagccctctt cgagtcagta atctgcttcg cggccagttc atgggcacag      3240
     cgtctggcac tacagaccaa cattgccact gttaggaaag gtcaaagaag tgtcctatta      3300
     aggctaactg gagccttcaa cactacctca gacgaagcac tctgcgtggt actggggata      3360
     ccaccaatag accttaccat acgactaaga gctgctatgt actggctgaa ggcggggaaa      3420
     tacgacaagg tccacgaact tgttggacaa gagataacag aacggaggca actaattaaa      3480
     tggagaatgg acacatggca aagggaatgg gaaaactgcg agaaaggaag acgtgtctat      3540
     gactttttcc cgaatataag ggaacgtctt cgaatgggtc atatcaatcc cagccggggt      3600
     atgatccact tcctaacggg acacggcccc taccccacac acctcacacg tgtgggtctc      3660
     agtgacaatc catgctgtac gtgtggagaa attgggaccc cagaacacac tgtcatacac      3720
     tgtcagctct acaaaacaca cactcacact atgtttgaca cgactaaaga cctaaacgaa      3780
     ctaatacgag ataagaacgg atgggacata atgaacaggc tgacggacga agtctcacta      3840
     cgaaaaaaag cacgagtaca cacagaacgt aagacgtaat gcaacacgaa acgcccacaa      3900
     cagaagacaa aacacttacg atgaatctga cactgaaagc acaaacagta cagattacac      3960
     cacagatgac agccccgaca cagaggacga tataaacaca tgcgaaatgt aacctacaga      4020
     tatagccaat cataagagtc tcaaaatgag aaaactccag gatggcaggg ctcgaagtaa      4080
     attccgaggc ctcccaccct ggactttcct ctcttattct tcagactgtc actcaaacca      4140
     atctttccta tcttctatta ttctcttctt aaaatagttg atgtttttaa gttgcctttc      4200
     cattttcctt atgataagtt tttacgcttt tctttgtatt ttttatctaa ttactgtaaa      4260
     tgtataaaga aaataatgta tcacagtcgc ataaatgtat cacatagttt tgtaatcacg      4320
     accagctata tacccaaagg cagctggtcc gcaasaaggg taaataaata aataaa          4376
//
ID   R1-3_PBa    repbase;    DNA;    INV; 6465 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-6465
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 755-755 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           687..2909
FT                 /product="R1-3_PBa_1p"
FT                 /translation="MDSAININQDGSTSVTTDVSQKDANMDKEGNSSKPRV
FT                 ISCEEVTVRVEKLRPDTPSSSRKDAPVDDIVMSPTVGDKSVSEVELSASDL
FT                 RALAPPKQRGRPRGPNYKPPSRPAPTDADPSWALGEEGWFVRPDDDDAMST
FT                 TSSSSKTKRKRKATTPPEPESGSPDEESADDPIDTLAPTYRLGSQAVQLVD
FT                 NVELMRSKSPRIQGKLSGRMRKSLAKIKEITCILSDRAQSGGSEDRARQSV
FT                 ANMAREIKLLKEEISRLKEDNKQLKIENKKTREYYEKLMAPSTSSRKISPP
FT                 GSPPKKRSPNYSEVCAASKKPEGRQFPEINSKELVSLITENVVRSLNSLYG
FT                 VHLPVGDSLRSDVDSGTPAPVTKKMVIVERNKKPRLNKEWPPLHKTPGETD
FT                 PSISETIPFTATDTEVEWIQVNKKRRKKNKKKETRDSLLPSSLPNQGRGRK
FT                 GTPREEGKSVIRETRKQESAVGQGLARRSGIPPGDKRKPPRTAAITIKSTQ
FT                 GKSCDEAFFKIREMISLSELGIDRTRTRYTQSGDLLIEVHGENNVEKADKL
FT                 AATARQIVSPSVVISRPVKMASIRISGIDNSVKEEEIVKVVSLQGGCKASE
FT                 VKINNKIRVNNGLLVVWMRCPLSTAIKLSRLGRIQVCWTEARIDLMEERPV
FT                 QCFRCLSFGHLSRSCKSPVDRTGTCYRCGEKGHSSNSCDREPKCILCFEAG
FT                 LQSDHRLGNNRCHALKFPDRMKPVRRLEDCNKTIEMETNDL"
FT   CDS           2902..5979
FT                 /product="R1-3_PBa_2p"
FT                 /translation="MIYKSLQINLNHCKRAQDLMMHYVKEMGISLVFVSEP
FT                 YRTEGGTDWYVSACEKSAILLFDVTGTPSVSRIKSGNGFTALKVNDHLMVS
FT                 CYFSPNRSLEEFGGFLDDLYDLVRFYPMERVIIAGDFNARSTSWRDTITND
FT                 RGTLLERWLDSTGLVVANNSSRPTCERDQGMSIVDLTLVSGRVVRDGFTWR
FT                 LMSDLVSFSDHRYIRWQFGRFEPRKFNTFVRKGWNPDKVDPDKFKDEYLRC
FT                 ADVLCDPTSLANDXSHSLTQLLSRVCDLSMPRSRQVHIRRAYWWNEEIAEL
FT                 RRLCIQTRRKLTRARRRKDRNPQQYEDLRLQYSQRSRNMRNAISRSQKLAW
FT                 SELLEEINSNPWGRPYLAIMKKIRGSEYNAPLDYLSFAKIGEVVRSLFPTR
FT                 MAIKWNKDALGVLDETIPAVLEDEVTAAIKKSCSRKAAPGLDGLSARILRL
FT                 YCSLDSTRFVKCFDKCMREGVFPSEWKRARLVLLRKPGKLDDSPSSFRPIC
FT                 LLSDIGKIFERILFNRIVSHLEGGLQSRLSHQQYGFRSGRSTNDAIIRMQR
FT                 IIRNHTSEGEYCLAIGLDIRNAFNSLAWRQIIKALKDKQVPLYIIRVLMDY
FT                 LSDRRILAIKKSGRYTSHLMTCGVPQGSVLGPLLWNITYDSVLSVGMPYGS
FT                 YTLCFADDTLIIVSSRNFNLLTSKANLICDLVISKIKSLELEVAPSKTEAV
FT                 LFCPGSIKDKSLTFLVDGVSIQSTDRMKYLGIVIDNRWKFAHHFEMVSGKA
FT                 ERVLSRLDLLMPNLRGPKFDKRKLYASVVHSILLYGAPVWATDEVLTKRNL
FT                 KSIDRIQRRVSIRVISAYRTVSLTASLLLAGIPPFAILARSRKKVYDRISE
FT                 LEFRHQCKLTHQARNVVKLRAKNDIITEWREMLTEMFPDDAALYTRKLVVP
FT                 HLEEWLSRTHGFLSYRLTQALTNHGCFSSYLYRIRKFYTKRCEFCPAGRDD
FT                 AGHTVFRCEAWSYLREEVERRLGKRLSEGTLVESMLSGRDEWQWIETMIGE
FT                 IMSLKEDAERRRQGALVVVA"
XX
SQ   Sequence 6465 BP; 1700 A; 1363 C; 1795 G; 1606 T; 1 other;
     ccctccaggg gctgtctcct cttcggggga ggcagtacgg gcttcgcgaa cccggagtac        60
     ccgagctggt gtgcatggga gagagagaat gggttttggt acgtgtggga cacggtggag       120
     ggtccttgga tattcctggt agactaacca aggggggagt agtagccccc caaccgggct       180
     gggaggtgga ggctggcgtt gtgacctctg gggtagtaat aagggtaatc gtaagtcctg       240
     tagcctcctt agggagactg caggcaaaga tcccgtgaac ccccatgtcg tgatggccgc       300
     tcccctccca gtggctggag cctatgccgg ggttgaaggg ggcctgaagg cgtgtgtgtg       360
     ggggagttat gtggccagta ttctcccata cccggagctg catagggcaa attgcagcac       420
     cgtctagccc ggggcacggg tgtccgccct tcggatgggt acgggcccgt gtagtagggg       480
     tgacgtaaaa ccttagcatc atctatggcg cgggcctatc ccgtaacctt ttttgttaga       540
     gtcattttgt acggataggg tgggccgcct gataaaccgc ttctcggctt ctgtactctt       600
     aactagggac ttctttacag cggggaagtg gctgcaccgc ggtgtggctc ccatgatggg       660
     cgaaccgctt ttctactaca ggcaacatgg atagtgctat taatataaac caggatggat       720
     ctacctcggt gacgactgat gtttctcaaa aggacgcgaa catggacaag gaagggaact       780
     cgagtaaacc tcgagtaatt agctgcgagg aggttacggt gagagtcgag aagttgcgac       840
     cggatacacc ttcctcttct cgaaaggatg ctccggtgga cgacatcgtt atgtcaccga       900
     cggtcggtga taagagtgtt tcggaggtgg aactgagtgc ctccgatttg agggcactag       960
     ctcctcccaa acaaagaggt agaccgaggg gtcccaacta caagcccccc agtaggcccg      1020
     ctccgactga cgcagatcct tcttgggcat tgggcgaaga gggttggttc gttagaccag      1080
     acgatgacga tgctatgtct acaactagca gtagctctaa gactaagagg aagaggaaag      1140
     ccacgacgcc acccgaacca gaaagtggct cgcccgacga agaatccgca gacgacccaa      1200
     tagacacgct tgcccctacc tatagattgg gctcacaggc ggtgcagctg gtcgataatg      1260
     tggagctaat gcgatccaaa tccccgcgga tccagggtaa actctcgggt aggatgagga      1320
     agagccttgc gaagattaaa gagataactt gcatattatc cgatagggcg caatcgggcg      1380
     gtagtgagga cagggctaga caatccgtgg caaacatggc tagagaaatt aagctgttga      1440
     aagaggagat ttctaggcta aaggaagata acaaacagct aaaaatcgag aataaaaaga      1500
     cgagagaata ttatgagaaa ctgatggctc cttctacttc ttccaggaaa atatctccgc      1560
     ctggttctcc acctaagaag cgcagcccta attatagtga ggtctgtgca gcctcgaaaa      1620
     agcctgaggg aagacaattc ccagaaatta atagcaagga attagtttcg ctaatcacgg      1680
     aaaacgtagt gagatccttg aactcgttat acggagtaca cttaccggtt ggtgatagtt      1740
     tgcgtagtga tgttgactcg gggaccccgg cacctgtaac aaagaaaatg gtgatagtgg      1800
     agagaaataa aaaacccaga ttaaataagg agtggccacc tctgcataaa actcctggag      1860
     aaacggatcc ctctatatcc gagacgattc cattcacagc aacggatacg gaggtggaat      1920
     ggatacaagt gaacaagaaa cggaggaaaa agaacaagaa gaaggaaacg agggattcgc      1980
     ttcttccctc ctctctaccc aatcagggga gaggaagaaa gggaacccct cgcgaggaag      2040
     gaaagagtgt cataagggaa acgaggaagc aggaatcagc tgtgggacaa ggattagcta      2100
     ggagaagtgg cataccgcct ggggacaaga ggaagcctcc tagaacggcc gctatcacca      2160
     taaaatccac tcaaggtaag tcttgcgatg aggcattctt taaaattcgc gagatgattt      2220
     ccttatctga attgggtatt gaccgtacaa gaactaggta tacccaatcg ggtgacttgt      2280
     taatagaagt ccacggagag aataacgtgg agaaagccga taaactggcg gcaacggcca      2340
     gacaaattgt aagtcccagc gttgtaattt cgcgcccggt aaagatggct agcattagga      2400
     tttctgggat tgataattct gttaaggaag aggaaattgt caaggtggta tctcttcagg      2460
     gcgggtgtaa ggccagtgaa gtcaagatta acaataaaat tcgagtgaat aatggtcttc      2520
     tcgtcgtatg gatgcgttgc ccattgtcga cggccattaa attgtccagg ttaggaagaa      2580
     tccaggtttg ctggacggaa gctagaatag acttgatgga ggaacgtccg gttcagtgtt      2640
     ttagatgtct ctcgttcggg catttaagcc gtagttgtaa aagcccagtg gaccgaacag      2700
     gtacttgtta taggtgcggt gaaaaaggac actcgtcaaa ttcctgtgat cgtgaaccga      2760
     agtgtattct ctgtttcgag gccggcctcc aatcggatca taggttagga aacaatagat      2820
     gtcacgcgct gaaattccct gacaggatga aaccggtgcg aagactggag gactgtaaca      2880
     agacgataga aatggaaacc aatgatttat aaatccttgc aaataaattt aaaccattgt      2940
     aagagggcac aggatctcat gatgcactat gtgaaagaga tgggaattag cctggtcttt      3000
     gtttctgagc catacaggac tgaaggagga acagattggt atgtgtctgc ctgtgaaaag      3060
     agcgcaatcc tcctgttcga tgttaccggt accccctctg tctcaagaat caaatctggg      3120
     aatggcttta cagcccttaa agttaatgac cacctaatgg ttagctgcta cttctctcct      3180
     aatcgctccc tcgaggagtt tggtggcttt ctggacgacc tctacgatct ggtacgtttc      3240
     tacccgatgg aaagagttat catagccgga gattttaatg cgagatcaac gagctggcgt      3300
     gatacgatta ctaacgatcg aggtacattg ttggagaggt ggcttgattc gacgggtctg      3360
     gttgtggcta ataatagctc gagacctact tgcgaaagag accaggggat gtcgatcgtt      3420
     gacctcaccc tggtttcagg tagggtggta cgagacggct ttacatggag gttgatgagt      3480
     gacctggtat ccttctcgga tcacagatac atacgttggc agtttgggcg ctttgagccg      3540
     cgaaaattta atacttttgt gcgcaaaggc tggaatccgg acaaagtcga tcctgacaag      3600
     ttcaaggacg aatatcttag atgtgctgat gtactgtgtg atcctacgag tttagctaac      3660
     gactwctctc actcgctcac tcaattgttg tctcgtgtct gcgacttgtc aatgcctaga      3720
     tctagacaag tgcacataag aagggcctac tggtggaatg aggagatagc cgaattacgt      3780
     aggctatgta ttcaaacacg acggaagcta accagagctc gaagacgaaa agaccgcaat      3840
     ccgcagcaat atgaagacct ccggctgcag tatagtcaac ggtctcggaa tatgaggaat      3900
     gcgatctcgc gctctcaaaa actggcctgg agtgagctac tggaggaaat aaactccaat      3960
     ccttggggta ggccgtacct ggcaataatg aagaagatcc gaggttcgga gtacaatgct      4020
     ccactggatt atttgtcctt tgccaagatc ggcgaggtgg tgagatcgct ctttcctacc      4080
     cgtatggcca tcaaatggaa taaggatgca cttggggttc tggacgagac tattcctgca      4140
     gtgctcgaag atgaggttac agctgcaata aagaagtcct gctctcgcaa ggcggctcca      4200
     ggattggatg gcttatcggc gcgtatttta aggctttact gctcgctgga ctcgacgcgt      4260
     tttgttaaat gttttgataa atgtatgagg gaaggcgtat tcccctccga atggaagcga      4320
     gcgcgcttgg ttttactgcg aaagccgggt aagttggacg actcaccgtc gtcttttcgt      4380
     ccaatttgcc tactgagcga catagggaag atcttcgaac gtatattgtt taataggata      4440
     gtttcccatc tagagggagg cctccagagc cgtctcagcc atcaacaata tggctttagg      4500
     tctggtaggt caacgaacga tgcgataatt aggatgcagc gtataatccg aaatcatact      4560
     agcgagggtg agtattgctt ggctatcggc ttggatatcc gcaatgcatt caattctttg      4620
     gcctggaggc aaattataaa agcgttaaaa gacaagcagg taccgttgta cataatacgt      4680
     gtgctaatgg attacctatc tgatcgtcgc atcttagcga ttaagaagag cggccgctac      4740
     acatcgcact taatgacgtg tggtgttcct cagggttcag tcctgggccc actgttgtgg      4800
     aacatcacat acgacagtgt attgagcgtt ggaatgccgt atggttctta cactttgtgc      4860
     tttgcggatg acacgttgat catcgttagc agtaggaatt ttaatttgtt gacctctaaa      4920
     gcgaacttaa tctgtgattt agtgataagc aaaattaaaa gtctagagct cgaagttgct      4980
     ccttctaaga cggaggctgt attgttttgt ccaggtagca ttaaggataa aagtctcacc      5040
     tttttggtgg atggggtctc tatccagtca accgatagga tgaagtacct cggtattgta      5100
     atcgacaata gatggaaatt tgctcatcac tttgagatgg tatcgggaaa ggcggaaaga      5160
     gtgttatcgc gactggacct cttgatgccc aacctgcgcg gtcctaaatt tgataagcgt      5220
     aagttgtacg ccagcgtagt gcactccata ctattgtatg gtgctccggt atgggccacg      5280
     gatgaagtcc tcactaagag gaatttaaag tcgattgatc gtatacagag gcgtgtatcg      5340
     attagagtta tctcggccta tcgtacggta tcgttgacgg cgtcactgct tttagcggga      5400
     attcctccct tcgccatctt ggccaggagc aggaaaaagg tgtatgaccg tatttcggaa      5460
     ttagaattta gacaccaatg taagcttacc catcaagcaa gaaatgttgt taaacttaga      5520
     gctaagaatg acataattac agagtggaga gaaatgttga ctgaaatgtt tccggacgat      5580
     gctgcgttgt acacccgaaa actagtagtt ccacacttag aggagtggtt atccagaact      5640
     catgggtttt tgtcatatcg attgacgcag gcattgacga atcatggctg ttttagttca      5700
     tatttatata ggattagaaa gttttataca aagcgttgcg aattttgtcc tgcaggacgg      5760
     gacgatgctg gtcacacggt gtttcgttgt gaggcatggt cttatttgcg cgaagaagtt      5820
     gagcgaagac tcgggaaaag attatctgag ggaacgctcg tcgaatctat gttgtcggga      5880
     cgagacgagt ggcaatggat agaaacaatg ataggtgaaa tcatgtctct caaggaagat      5940
     gcggagagac gaagacaggg tgcgttggtc gtggtggcct aggggatcgg ttatgccgat      6000
     cgcccggtcc agtcgcgtgg tcgcatctgt cccccgcgtg gcggatcgac tgcgcgtttc      6060
     ccgcattccc gcatgtgcgc gcctgtcatg gggtccggtg ggaactggtt ctcacctgat      6120
     tccgtttcct cttcccgcga cgtgaatcct cgcccttcct ggtcctggga tccctggtcc      6180
     tggtggtggt gtggatgtcc gagtgttgga ttcctgtagc agtcaaagaa gttaattaat      6240
     aaccgtaatt gttgggcttc ggttttacga gcatggctgg atgggccctg aagttgtgcc      6300
     tgtggcgtcc cggggttcta tccgtaagcc tttagtgttg tattcgtata gaggatggtt      6360
     ttagtgggta gtacttggcc agcaagtgag tcccacactc cctggaggga acggttacct      6420
     ccaggagctg cgtaaatgca tttctcctcc tctcgcaaaa aaaaa                      6465
//
ID   R1-3_PPo    repbase;    DNA;    INV; 131 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-131
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3134-3134 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 131 BP; 36 A; 34 C; 33 G; 28 T; 0 other;
     cggtgcgttc ctctggagat cccgggaccc tcaaatcgca cctgagggcg gccaccgagg        60
     gggtttttag tgagtagaaa tctcacataa gggtatcttt cgaagatttc cccccgatac       120
     caaaaaaaaa a                                                            131
//
ID   R1-3_SIn    repbase;    DNA;    INV; 3592 BP.
XX
AC   .
XX
DT   07-FEB-2012 (Rel. 19.02, Created)
DT   07-FEB-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-3_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3592
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 475-475 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           368..3127
FT                 /product="R1-3_SIn_1p"
FT                 /translation="MLGDWAAALDLHVINRGSVPTCVAARGSSIVDITMGS
FT                 PEAHGEITEWSVSDEETSSDHRYIPMGVSSPSPVREPCARPERPDGAPPRW
FT                 SLKHLDGDLAMAAAIAKSWEVSPEGGDVEEEAEWFREAMSQVCDVAMPRRR
FT                 AGGPPKKKAVYSWTPEIASLRQECNSARRQYTRYRRRRRAAEEEAARLYQV
FT                 YRAARKALQAAIAESKANAWGELLETLDGDPWGRPYRLVRNKLRQAAPPTT
FT                 ESLDPGFLREVVAALFPTDPEEEARPREDPALVRERTRWSEDLRVTEEELA
FT                 RAVKRMRRKNAAPGPDGVPGRVWAIALSVLGDRLRHLFDRCLQLGRFPRLW
FT                 KEAGLVLIPKQGKPADDPSAHRPICLIGEVGKLFERVIASRLATHMSTVGP
FT                 DLEYTQFGFRPGRSTVGAIQRLRFLVDRAVNRGRVVLAISLDIANAFNTLP
FT                 WEKIREGLRRKGVPPYLEEVVGAYLGDRVVACRDRDGVTMSRVVSRGVPQG
FT                 SVLGPLLWDVGYDRALDHRLPAGVSLVCYADDTLVVVSGSTWGEARRTARD
FT                 GLGIMLRRIRRLGLRVALSKTEVLWLGGRGEKGPGFRSLLVEGTRVEVKSQ
FT                 MKYLGLILDSKWGFQPHFEWMAARLGAAVSSFSRLMPNLRGPSERVRRLYM
FT                 GVVRSMAMYGAPVWCGALVANNNNIRLLQREQRKMAIRVXRAYRTISWEAV
FT                 CLLAGSPPWAYVACSLADTHEWKEELARGGEPATQRMLEARRSEARREVVE
FT                 HWRERLPHARAGLRVVEAIGPVLREWVGRGHGGLSFHVTQVLSGHGCFGEY
FT                 LHEKVGREATTKCHHCPEARDTAQHTLEVCPAWAVERRALVDGIGAGLDLP
FT                 TVLGRMLASADEWAAVASFCDTVMSQKEAAERAREEAPDAPPERRRRGGGR
FT                 RRRFLQQHQQGPPPPP"
XX
SQ   Sequence 3592 BP; 626 A; 1046 C; 1322 G; 589 T; 9 other;
     caggcgatgg tgaagtggaa cattgaggtg gcgatcgtgg ccgagtccta tgccgtcccc        60
     cctgccgata gcaggtggcg gggcgacacg gcggggctgg ttgcgatcgt cagcaaaggg       120
     aggaagcgcc gcctcctccc tcgtccccgt gtcxaggggc gaggggtxcg tcgcctgccg       180
     atggggggaa tagggccgtc gtggggxttt acatctcccc cgacgtctcg ccgcggactt       240
     cgaagacaag atcgaggaga tcgagagggt cgtccgccgc ctgcagccgg gctgggtgct       300
     ggtggcgggc gacttcagcg cxxggtccgc tgactggggc tgcccagtca cggacaccag       360
     gggcgagatg ttgggggact gggccgccgc actggacctc catgtxatca acaggggatc       420
     ggtgcctact tgtgtggcgg cccgggggag ctccatcgtg gacataacga tgggctcccc       480
     tgaggcgcac ggcgaaatta ccgaatggtc ggtctcggac gaggagacct cgtccgatca       540
     tcggtacata ccgatggggg tctcctcgcc gagtccggtg agagagccgt gcgcccggcc       600
     cgaaagaccg gatggcgccc ccccgcgatg gtccctaaag cacttggacg gggacttggc       660
     gatggccgct gccatcgcca agtcctggga agtttcccct gagggaggcg acgtggaaga       720
     ggaggcggag tggttccggg aggcgatgtc gcaggtttgc gacgtcgcca tgccccggcg       780
     ccgtgcgggc gggcctccaa aaaagaaggc cgtgtactcg tggacgccgg agatcgcatc       840
     tcttagacag gagtgcaact ccgcgcgtcg ccagtacacg aggtaccgtc ggagaagaag       900
     ggcggcggag gaagaagcgg cccggctcta ccaggtgtac cgggccgcga ggaaggccct       960
     ccaggcggcc attgccgagt ccaaggccaa tgcctggggg gaactgctgg aaaccctgga      1020
     cggggatccg tgggggcgcc cgtaccgcct tgtcaggaac aagctccgac aggcggcgcc      1080
     ccctacaacg gagtcgctcg atccggggtt cctaagagag gttgtcgccg ccctcttccc      1140
     gacggatccg gaagaagagg cccgcccccg agaggacccg gccctggtca gggaacgcac      1200
     tcggtggtcg gaagacctca gggtcaccga ggaggaactg gccagggccg tcaagcgcat      1260
     gaggaggaag aacgctgccc ccggccccga tggggtaccg gggcgcgtgt gggctattgc      1320
     cctcagcgtc ttgggggacc gcctcaggca cctttttgac agatgcctgc agctggggcg      1380
     gttccccaga ctatggaagg aagccgggct cgtccttatc cccaaacagg ggaagcccgc      1440
     ggatgacccc tctgcccacc ggcctatctg tctgataggc gaggtgggca aactxttcga      1500
     gagggtcata gcgtctcgcc tcgcgacgca catgtcgacg gtgggccccg acttggaata      1560
     cactcaattc ggctttcggc cggggagatc gaccgttgga gcgatccagc ggttgagatt      1620
     cctggtcgat cgcgcggtga accggggcag ggtggtgttg gcgataagct tagacatcgc      1680
     caacgccttc aacaccctgc cctgggagaa gattagggag ggcctccgaa gaaagggggt      1740
     tcctccctac ctagaggagg txgtcggggc ctacctcggc gaccgtgtgg tcgcctgcag      1800
     ggaccgagac ggcgtcacca tgagcagagt ggtcagcagg ggggtgccgc aggggtcggt      1860
     cctaggaccg ctcctgtggg atgtagggta cgaccgtgcc ctagatcacc gcctccctgc      1920
     gggggtgtcg ttggtatgtt acgccgacga caccctggtc gtcgtctcgg gtagcacctg      1980
     gggcgaggcg agacgcaccg cgagggacgg gctcggcata atgctgagga ggatccgccg      2040
     cctgggccta agagtggccc tcagtaaaac ggaggtgctc tggctcgggg ggcggggcga      2100
     gaagggcccg ggcttcagga gcctcttggt cgagggcact cgagtcgagg tgaagtccca      2160
     gatgaaatat ctgggactga tcctcgactc gaagtggggc tttcagcccc actttgagtg      2220
     gatggccgcc aggttgggcg ccgctgtctc tagtttcagc cggctaatgc ccaacctgcg      2280
     cggtccatcc gagagggtac gccgcctcta catgggggtg gtgcggtcga tggcgatgta      2340
     cggggcgccc gtgtggtgcg gggccctggt ggccaacaat aacaacataa ggttgctcca      2400
     aagggagcaa cgcaagatgg ccatcagggt cxcgcgcgcg taccgcacca tctcctggga      2460
     ggcggtgtgt ttgctggcgg gttcgcctcc gtgggcgtac gtggcgtgtt ccctcgcgga      2520
     cacccacgag tggaaggagg agcttgcccg cgggggcgag cctgccacgc agcggatgct      2580
     ggaggctcgg cggagcgagg cccgccgaga ggtggtcgag cactggcggg agcgtctgcc      2640
     ccacgccagg gctggcttga gggtggtcga ggccattggc cccgttctta gggaatgggt      2700
     gggcaggggg cacgggggtc tctcgttcca cgtaacgcag gtgctctccg ggcatgggtg      2760
     cttcggagag tacctgcacg agaaggttgg gcgggaggcc accacgaagt gccaccactg      2820
     cccagaggcg agggacacgg cgcaacatac cctagaggta tgcccggctt gggctgtcga      2880
     gcgccgtgcc ctcgtcgacg ggataggggc cggtctcgac ctccccacgg tgctggggcg      2940
     gatgctcgcc agtgccgacg agtgggcggc ggtggcctcc ttctgcgaca ctgtcatgtc      3000
     gcagaaggag gcggcggagc gggcgcggga ggaggctccc gacgcgccgc cagagaggag      3060
     gcgaaggggg ggggggaggc gcagaaggtt cctgcaacaa catcagcagg gaccacctcc      3120
     tcccccttaa cggaaataaa cgcgggcagt gggcagggag agggtgagtt cgtcgccctc      3180
     tccctgcccg aaatcagaga gcgccggtgt cctggcggcg acggtttggt cgccgccggg      3240
     gtcaacccca ctggcgcggc cgcatttccc tcctcctctc ttcctcaggg aagggtgaag      3300
     gagggacggc cgggaaggaa cagtggggag gggggactct cacagctcgg tcgagctctg      3360
     gccgctaact ccggaggggg gttcctgctc tcgggcgggg acccgtttgg gctaggacgg      3420
     atcgcggtgc atgcttagtt cgatcccgtg atccgtcccg agcccagacg ccggaaaaag      3480
     ttgggtttta gtgagtatgt cggctagtca ggtcgacgag tctcacgtac cccgcgttcc      3540
     tgtccccgca ggaccgggga cccataaagg cgtttcccaa ctataaaaaa aa              3592
//
ID   R1-4B_DK    repbase;    DNA;    INV; 5335 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DK;
KW   R1-4B_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5335
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1359-1359 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The consensus is ~78% identical to
CC   that of R1-4_DK.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1315..2280
FT                 /product="R1-4B_DK_1p"
FT                 /translation="KSYSSKLQKRWPTPTPRPTSCASQQTTPTLTGTKHTD
FT                 APAGRPGKPAWQLVKAKPKPKNPQTRAEXSAREEDRAPRTSMPRKQRSDAI
FT                 LIKCNEGSYADMLKIVKTEPSLQGLKNNVQGVRRTANGGLLLRMQKPLDPA
FT                 TQQLQAAIKTAISGKAEVTVMHETVQVEIRDLDDMTSGEEVTMALFAGEDC
FT                 DIPGDAAPRMRSRRTQIATVNLRPEHARRLLERAKSGSDGSSAALGRRQNR
FT                 SAALSAWASGIMLRDAEPRKQQPRPRRTPASNAGALATSTKHAMASLGASY
FT                 APRGKPRGAARTLSRSCPEYQKAAKHMQNG"
FT   CDS           2276..5200
FT                 /product="R1-4B_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVKFLQLNLNHCRAAQDLLSQTVTELKTDIAILSEPY
FT                 RAKPDGVWQQSTDGGAAIWSCGQPAGHMTQRASRPGYTRAKLHEVTVYSCY
FT                 LAPSMHIDAFRDVVLEIAQDARGRSPVLIAGDFNAWSTAWGSSRTTQRGTI
FT                 LLDALATLNVCLPNDGNRCTYSKAGRESVIDLTFASPELTRNXQWEVTDLL
FT                 TYSDHAAITFKTMRXQQRLPDRQTAYRVHTLNVEVLLASMDCNAIIGDANS
FT                 CADGLSARIKAACDAAMESSTRGCGRRPVPWWNQEIATARSECLSARRRCQ
FT                 RNRGRPLQGMYESIYRERKKALKVAIRASKNRCFQDLCDAADQEPFGSAYK
FT                 MVMGKLIRQPTPTSHEQLGAIVTTLFPAQPPLVLPNVTVGEPIPIDEEEVL
FT                 SALTSCKASKAPGPDGIPNAALLAIVKSHPKLFAEVYNNCIAERTFPTAWK
FT                 QQRLVLVPKPGKLDDDPSSYRPLCMLNSLGKIFERIICSRLEAEIEERGAL
FT                 SSHQHGFRKKRSTIDAIREVTQLAENAIEGERWQGGTKKYCLVCTLDVKNA
FT                 FNSANWSRVLQALQRGGISGYLVQLIADYFKDRVLQYKSDAGNQEHQVTGG
FT                 VPQGSVLGPILWNVMYDGVLRLNLPEGCSVVGFADDIALVTVEKHLADVST
FT                 KCSLAIDMLMSWLADNGLSLAEHKTEAVLISSRKAVEKVNFRVGSTTIESC
FT                 PAVKYLGVQIDHRLNYKSHLEYVAAKASKATGAISRMMANTRGPRQHSRRL
FT                 IATVVTSTILYAAPIWAEAMSTASYSRQCKTVYRRCALRISSCFCTVSEEA
FT                 ALVVAGTIPIDLLAAERRTGNSGSGTQRSRTISLWQTRWDSASTGRWTYRL
FT                 IPELEPWLYRRHGQMDFYTTQLITGHGCFKAYLHRFKHEADPFCDYCGSGV
FT                 VEDAEHAFFSCSLFSADRAALEAATSCLTPENIIGCMLETPSKWEAVTNMA
FT                 ATVLRELRRREKIRRMDGER"
XX
SQ   Sequence 5335 BP; 1341 A; 1465 C; 1518 G; 855 T; 156 other;
     tgggamgcga ctgcsgmwtt cgcggcaagm gtsatgaaaw cgctkaggmc sctggagasg        60
     ggsaggagsg wgcgkgcggg staggcggcc cgcmmctgcg cgaagmaatg cctwgcggcs       120
     gtaccgcgcg gcsagggmcm cctwcgccgc gagagagsag gagmcaacat ctgtctgtwg       180
     awttgcacat tactawgatw takttgttaw ttkggmtgta mawaawaaaw waaawcgmac       240
     acagaagmca cacacacacg camacgkcag wgtttkttta ctcacastgg ttggacgcgt       300
     ttttccgagc tccgaaagwa aagtagtgta gacasctcgg aggscgctga aaagsagtwc       360
     tagtgmgkag tgagacmmct gggaagggta cgtaccagaa ccggccccgg cwggmtatcc       420
     gaatctwggc acttgsgacc sccagggcaa gggggggmck ctctcccgtc cagcgagcgs       480
     cttatcgcgc tctcacggmt tggaacagtt tccacamgcc actttttccc tcgcgttttt       540
     ccctcacsgc gcagcacamg gccagctgat cgcagtgttg cgcagcgcac gcgcagsgag       600
     ctttcgcgta gtgttggaaa acgmgagtag mmmgcgcgat tagacaagtt msmgscwmag       660
     ccaaggttkg mmtttwaatc taascttaaa ttkkcackma catscmgcag ktggcwccag       720
     tggggcwaag agcasaaggc caaggaactm gccattwtcc aacccctccg ctgaggcggc       780
     gccagtcaaa aggggctctg gggaccgaga aggagcggta taactcccat caggcatccg       840
     cwgggggaaa tccccgcsca ccgagggacc ccamcaagag caggtgcgat gagcmaggmg       900
     aagccgccwg caggccggga tgacgagacc caggcactgg cggtagckag agcagaggag       960
     gagctgctgc gwaacttcca gcgcgwmaag cagaaggtgc aacgctcgcc tccmgcgasc      1020
     acgmcmgaga mgcamccggt gtcggcwmmm ccgwatgtgc akggmccsgt gttcgtwttt      1080
     ggcgakamtg mggaggagwc ggccaccccg aagagaagcc gsgatgctgt gagcccmgag      1140
     gwgaaccmgw cggagccaag aagcagaggg tsgawgccag cgcacmagcm ccggccgaga      1200
     agctkgggam gatgctggak gasatgatck csaagttcac ggacaccaag asmaacmaca      1260
     aaaaggtggt ccgccacgtc acscagggsa caatmgactc satgctggck atgaaaaagc      1320
     tacagctcga aattgcagaa gcgatggccg acgcccaccc cgaggcccac ctcatgcgca      1380
     agccagcaga caaccccgac gctgactggc acgaagcata cagatgcacc cgcaggcagg      1440
     ccaggaaagc cagcttggca acttgttaag gccaagccta agccaaagaa cccccagacc      1500
     agagctgaga scagcgcgcg cgaggaagat cgtgcaccac gcacttcgat gccaaggaaa      1560
     cagcgctccg acgctatcct aatcaaatgc aacgaaggat cctacgcaga catgctgaag      1620
     atcgtgaaaa ctgagccctc cctacaggga ctcaagaata atgtgcaagg tgtgcgaagg      1680
     acagctaatg gcgggctcct gcttagaatg caaaagcccc tcgacccagc tacgcaacag      1740
     ctacaagctg ccataaagac agccatctcc ggcaaagcgg aggtgactgt catgcacgaa      1800
     acagtccagg tggagattcg cgacctggac gacatgacca gcggggagga ggtcaccatg      1860
     gcccttttcg ctggcgaaga ctgcgacatc ccaggcgacg ctgcacccag gatgcgaagt      1920
     cggcggacgc agatcgctac ggtcaacctt agacctgagc atgcgcggag gctgctggag      1980
     agggcaaaat ccggatcgga tgggtcgtct gccgcattag gcagaagaca gaaccgaagc      2040
     gctgctttaa gtgcatgggc ttcgggcata atgctgcgag atgccgagcc tcggaagcaa      2100
     cagccaaggc cacgcaggac tcctgcttca aatgcggggg cgctggccac aagcacaaaa      2160
     catgccatgg caagcctagg tgcatcttat gcaccgaggg gcaagccgcg gggagcggca      2220
     cgcactctga gcaggtcctg cccagagtac cagaaggccg ccaaacacat gcagaatggt      2280
     taagtttctc caacttaacc tcaaccactg cagagcagcc caggacctcc tgtcccaaac      2340
     tgttacggag ctgaaaacgg acatcgctat actaagcgaa ccgtataggg caaaacctga      2400
     cggagtgtgg cagcagagca ccgatggcgg ggcagccatc tggagctgcg ggcagcccgc      2460
     gggccatatg acgcagagag cgtcgagacc tggctacacc agggccaagc tccatgaggt      2520
     gaccgtatac agctgttacc ttgccccgag catgcacata gacgccttcc gagatgtggt      2580
     gctggagatc gcccaggacg ctcgtggaag gtcgcctgta ttaatcgctg gggacttcaa      2640
     tgcatggtcc accgcttggg ggagctcgag gacaacgcag cggggaacca tcctcctgga      2700
     tgccctggcc accttgaatg tttgcctccc caatgacggt aacaggtgca cctacagcaa      2760
     ggcaggcaga gagtcagtca tcgacctgac ctttgccagc ccggaactca cccggaacwg      2820
     ccaatgggaa gtcacggacc tgctcacata cagcgaccat gccgcgataa ccttcaagac      2880
     gatgcgcakc cagcagcgmc ttcctgaccg gcaaactgcg tatagggtac acaccctaaa      2940
     cgtagaagtg ctcctagcca gcatggattg caacgccatc attggggatg caaatagctg      3000
     tgcggatggg ttatctgcca gaatcaaggc tgcctgcgat gcggcaatgg agagctccac      3060
     caggggatgt ggcaggcgac cagtcccgtg gtggaaccag gagatagcca cagcccgaag      3120
     cgagtgcctc tcagcaaggc ggagatgcca gcgaaacaga ggacgccctc tgcaagggat      3180
     gtacgagtcc atctacaggg agaggaagaa agccctcaag gtggccatca gggcgagcaa      3240
     aaacaggtgc ttccaggacc tctgcgacgc ggcagaccag gagccgttcg ggtcggccta      3300
     caagatggta atgggaaagc taatcagaca gccgacacca acctcccatg aacaattggg      3360
     agcaatagtt accacgctgt tcccagctca gccgccctta gtgcttccca acgtgaccgt      3420
     gggggaacca atccccattg atgaagagga ggtcctaagc gcgctaacca gctgcaaagc      3480
     ctccaaggcc cctggaccag acggcattcc aaacgcggcc ctgcttgcga tagtgaagtc      3540
     ccacccaaag ttgttcgcgg aggtgtacaa caactgcatc gccgaacgga cttttcctac      3600
     agcctggaag cagcaaaggc ttgtactcgt tccgaagccg ggaaaattgg acgacgatcc      3660
     atcttcatac cggcccctct gcatgctgaa ctccctcgga aaaatattcg agcggattat      3720
     atgcagcagg ctggaagcgg aaatcgaaga gcgcggagcc ctatccagcc accagcatgg      3780
     gtttcgtaag aaacgcagca ctatcgatgc aatccgcgag gtaacgcagc tggcagaaaa      3840
     tgcgattgaa ggcgaaagat ggcaaggagg caccaagaaa tactgccttg tgtgcaccct      3900
     ggacgtcaaa aacgccttca attctgcaaa ctggagccga gtcctccaag cactccaacg      3960
     gggcggcata tccggatacc tcgtacagct gatagccgac tacttcaaag accgcgttct      4020
     gcaatacaaa tcagacgccg gaaaccagga gcaccaagta acaggaggcg taccccaagg      4080
     ctcagtcctc gggccaatcc tatggaatgt catgtacgac ggtgtactga ggctgaatct      4140
     gcccgaaggc tgctctgtag tgggcttcgc agacgacatc gctttggtca ctgtggagaa      4200
     gcacctggct gatgtttcca caaaatgcag ccttgcgatc gacatgctaa tgtcctggct      4260
     agcggacaac gggctctcgc ttgccgaaca caagacggaa gcagtgctca tcagcagcag      4320
     gaaggccgta gagaaggtga acttccgtgt cgggtcgact accatcgagt cctgcccggc      4380
     ggtcaagtac ctaggcgtcc agatcgacca caggctaaac tacaagagcc acctggagta      4440
     cgtagcggcc aaggcttcca aggccactgg cgccatctca aggatgatgg ccaacacacg      4500
     aggcccaagg cagcacagta gaaggctaat agcaaccgtg gtgacgtcta ccatcctata      4560
     tgccgcgccg atatgggcgg aagccatgtc gaccgcgagc tacagtcgac aatgcaagac      4620
     ggtatataga cgctgcgcac tgcgcatctc cagctgcttc tgcacagtat cggaagaggc      4680
     cgcactggtt gtggctggaa caattccaat cgacctactg gcagcggagc gcaggactgg      4740
     caactcgggt agtggaaccc agcggagcag aaccatctcc ctatggcaaa cgaggtggga      4800
     tagtgcgagc actggacggt ggacgtaccg actcatcccc gaactggaac catggctata      4860
     tagaagacac gggcagatgg atttctacac gacgcaactg attacaggcc atggatgctt      4920
     caaggcatac ctmcacaggt tcaaacacga ggctgatccs ttctgcgatt actgcggcag      4980
     cggagtcgtc gaggacgcag agcatgcatt cttctcatgc tcactattca gcgcggatag      5040
     agctgccctg gaagcagcaa cgagctgtct cacaccggaa aacataatcg ggtgtatgct      5100
     ggagacgccg tccaagtggg aggcggttac gaacatggca gcaaccgtat tgagagagct      5160
     gaggcgccgg gagaagatcc gacgcatgga cggcgaacga tgagcggcac ctgaccgcct      5220
     gccgccccgc gaagtatagc tttgcggcag tcccgcggga gtggacctct ccttttcctt      5280
     tccttctcst acttttcctg tttgtacata tctatataac aaaaaaaaaa aaaaa           5335
//
ID   R1-4_AP     repbase;    DNA;    INV; 5203 BP.
XX
AC   .
XX
DT   19-AUG-2009 (Rel. 14.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 4)
XX
DE   Non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_AP.
XX
NM   R1-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5203
RA   Jurka J.;
RT   "Non-LTR retrotransposons from pea aphid.";
RL   Repbase Reports 9(8), 1797-1797 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..1997
FT                 /product="R1-4_AP_1p"
FT                 /translation="MSTHSTMDEDEGLQDAQQGTSQPQRTQRSPNTPGSSP
FT                 QHKKKRGSADPVPIAREAIKWIRYTLEIASTKKTNITAETQRSLFAKLEAL
FT                 EGSIHDMVIANLTLQSQLEESHRGAEICMSACAAQFGTELRLREAAHEQTL
FT                 EAVVARYAAREVAREEDAARVGNTAQQPVEHEEHTFAQVTEHGRRRNRGDR
FT                 PPAVRAAERSKSRTAKRTKLLAESRNEEHRPAFIIQSIDGAKASDTSTGIW
FT                 KKVMSKKVMPRCQTITTKQGKVIIKPLNKETADVLKSLSLESDELQEEPLM
FT                 WPRFIVRGVPSCMPESTIQEAILDQNPELGIEPGCIDRVFKPVFKRGPRDR
FT                 EDTNWVMEVNPPYYENVRKVEHLYIGFTRCRIAEYDEVTQCHVCLRHGHPA
FT                 AKCNEKQPTCAHCGRKGHLADVCPAAEAEPSCANCHGKHNARERSCSARTN
FT                 HLVGRARRTNYGKTQ"
FT   CDS           1997..5023
FT                 /product="R1-4_AP_2p"
FT                 /translation="MSISSLSVVQLNMGRASSVSDQLLEYCQTHNIDIAMV
FT                 QEPYTNRGRLTGFEVAPIRSFLSMGTRRRGRPEYLDYGAAIIVFNPDLIVV
FT                 PREAGTVENFVSVDLDCGEEGNVTLISGYFKYRVPTPVHVVALDGLIRDAN
FT                 EKTIIALDANAFSKRWFSRINDARGEALVSCIDEHGLVVMNTRCQHTTFNG
FT                 PRGRTNIDVTLADQVLQRRVANWSIDPGATSSDHQLIKFTVAMRTRTFEHR
FT                 ETRFILRKAAYQQFRLAYEELAARRQHREPNLDHNASSISEDVTAAAMAHA
FT                 PRARRRKRVKPPWWTNELHEARKAVRAAARAMTTTDGRQLFNQKRNVYTSI
FT                 LRRNKINSWRAFCTEEGKQPWGKLYRWLRNGSKRYCSIGLMTRPDGTRCDT
FT                 IDESVELLLNSLIPNDPGQQRPAPAEETLCDIHPISSSTLRDFAWAISPNR
FT                 APGNDGITGRMLRVLWPCLESRFLSLTNACMEKAHFPGSWKSAIVVPISKG
FT                 EDRDPGLPKSYRPVSLLPTMGKILEKVINHRLQEQIQPNYTGKQYGFTSGK
FT                 STMDAVGNLLLWNTQRAEKYAMTVFLDISGAFDNLAWPALQSDLESIGATP
FT                 HMRRWIADYLSGRTATMTVGGITKDVRVTKGCPQGSILGPILWNVTMEALL
FT                 RTTYPEHVAIQAYADDIAISIAAQTRVSLIQRAEEALRPALEWAHHRGLTF
FT                 SAQKSQAMITKGSLAAGFTIAFGTDRIATVDCIKYLGIWLDEERSFKRHVE
FT                 KLLGTEHTLFTRLRGTMGDGWGTKRTNLMTLYRCVFLPKVAYGVRFWAHAI
FT                 VSKAAIAKLGSLQRRALIGMTGAYRSTSTFALQILAGVPPLDLELGWIAIK
FT                 EEAKLLPDHLRTATIGAAADELLDTWQERWSDTQKGRWTYECFPDVRCRLK
FT                 LPLALGHEISQFLTGHGNFNSKLTELGLKQSPRCACDTGDEDVRHVVYDCP
FT                 THEPHRARLELAAHRAGYVWPCEMATLTSNKATYIALVKFAKVAAYFERPQ
FT                 PRG"
XX
SQ   Sequence 5203 BP; 1423 A; 1340 C; 1436 G; 1004 T; 0 other;
     gtgcgcgtac ggaccggtgt cggtgttgag tcggtccgat aaaacccccc ctcgtggggc        60
     ccgtttttgt gtgcttccat aaggaataca cggccgcccg ccggtattgc cgagcgattt       120
     ttggataatc gtcagcttcg agaccaggcg tcaagagcct gacgacgtga gttcggactt       180
     attatataac gtaattacgt aataccacgc aaacgtgacc ccccaccaag tggctggtat       240
     aggtagtata ccacccctcc ctaaaatttt aattggcgat aactaccaag ggaaaaaggg       300
     tacagacccc ggacccaggg ggaactcaat ttttgagcac accgcttgat ttcccgtata       360
     cgggaacaaa gcccccaccc cccccccccc cgatttgagt taagtataac tccgtgggta       420
     atcaccgcaa aaccctaggg gcaacggtta tcggttaccc taggtcaggg ccgcaattcg       480
     acccaatagg gaacggggta cccccccacc ccccattttg gttttcgttt tttgggcaga       540
     aatctttcag ttagaccttc agtacccata cccccgaggg gaaactcggg gttttgagtt       600
     ccctcccctc cagagggatg tcaacacaca gtaccatgga tgaggatgaa gggttgcagg       660
     acgcccaaca aggcacgagt caaccacaaa ggacgcagag atcgccgaac accccgggct       720
     cttctccgca acataagaag aaacgaggct cagcagaccc ggtacctata gcccgcgagg       780
     ccatcaagtg gatcagatat acactagaaa tagcgtcaac aaagaaaacg aacattactg       840
     ctgagacgca gcgcagcctg ttcgccaagc ttgaggcgtt agaggggtcg atccacgaca       900
     tggtcattgc aaatttaacg ctgcagagtc aactcgaaga gtcccacagg ggggcggaga       960
     tttgtatgag cgcctgcgcg gctcaatttg gaactgagct acggttgagg gaagctgctc      1020
     atgagcaaac gctggaggct gttgtggcca gatatgcagc cagagaggta gccagggagg      1080
     aggatgctgc aagagttgga aataccgctc aacagcctgt ggaacacgag gagcatacgt      1140
     tcgcccaggt aacggaacat ggacggagga gaaacagggg cgataggcca ccagccgtcc      1200
     gggctgctga gaggtcgaaa tcaagaacgg ccaagagaac aaaacttcta gctgagagca      1260
     gaaatgagga gcacagacct gcgttcatta ttcaatcgat agatggcgct aaggctagcg      1320
     acaccagcac aggtatctgg aaaaaggtga tgtcgaagaa ggtcatgccg agatgccaaa      1380
     cgatcaccac gaagcagggg aaagttatca tcaagccgtt gaacaaggaa acggcggacg      1440
     tgcttaaatc gctttccttg gaatccgacg aactccaaga ggaaccattg atgtggccta      1500
     gatttattgt caggggggtc ccatcctgca tgccggaaag cacaatccag gaggctatcc      1560
     tagaccaaaa cccagagcta ggaatcgagc cagggtgtat cgacagagtc ttcaaaccgg      1620
     tcttcaaacg aggcccacgg gacagagagg acacgaactg ggtaatggaa gtaaaccccc      1680
     cctattacga aaacgtaagg aaagtagaac acctatacat tggcttcacg aggtgtagga      1740
     tagctgaata tgatgaggtc acccaatgtc atgtatgcct gagacatggg catccagcgg      1800
     ccaagtgcaa cgaaaagcaa ccaacctgtg cccactgtgg ccgcaagggc catttggctg      1860
     atgtctgtcc ggctgcggag gctgaaccgt cctgtgcaaa ttgtcatggc aagcacaacg      1920
     ccagagagag atcctgctcg gcaaggacca atcacctggt gggaagagct aggaggacca      1980
     attacgggaa aacacaatga gcatctcttc cctcagcgtc gtgcagttga atatgggcag      2040
     ggcatcctcc gtcagtgacc aactgctaga gtactgccaa acgcacaaca ttgacattgc      2100
     tatggtccag gagccataca cgaacagggg taggctgacg ggcttcgaag ttgcccctat      2160
     cagaagtttc ctgtccatgg ggacgaggcg tagaggcagg ccagagtacc tggactacgg      2220
     agctgccatc attgtcttca acccggacct gattgtcgtg ccgcgggagg ccggcaccgt      2280
     cgaaaatttt gtcagcgttg acttggattg tggggaggaa ggcaacgtca cgctcataag      2340
     cggttacttt aaatacaggg tgcctacacc ggttcacgtg gtggctttgg acggactaat      2400
     ccgtgatgcc aatgagaaaa ccatcattgc tctggacgcc aacgctttct caaaaagatg      2460
     gtttagtagg atcaacgatg ccaggggcga ggcactcgtg tcgtgcatag acgaacacgg      2520
     cctagtagtt atgaatacaa ggtgccaaca cactactttc aatggtccga gaggccgtac      2580
     caacatagat gtaaccctcg cagatcaggt cctgcaacgg agagttgcca actggtcgat      2640
     agatccggga gccacatcaa gtgatcacca acttataaag ttcaccgtag cgatgcgaac      2700
     gaggactttt gaacataggg aaaccaggtt catccttcgc aaagcagcgt atcagcagtt      2760
     tcggctcgca tacgaagaac tagcagctcg cagacagcac agggaaccaa accttgatca      2820
     taacgcatcc agtataagcg aggacgtcac cgctgcagcc atggctcacg cccccagagc      2880
     cagacgccgc aaaagagtca agcccccatg gtggacgaac gaattgcacg aggcgaggaa      2940
     agccgtcaga gccgcggcaa gagcgatgac gactacggat ggacgtcagt tgttcaacca      3000
     aaaacgcaac gtctacacat ctattttgcg cagaaataaa atcaactcgt ggagggcgtt      3060
     ctgtactgag gagggcaaac agccgtgggg caaactatac cgttggctaa gaaatggtag      3120
     caaaaggtat tgctccatag gcctaatgac gcgaccagac gggaccagat gcgacaccat      3180
     cgacgaatca gttgaactgc tattaaactc gttaattccg aatgacccgg gtcagcagag      3240
     gccagcccca gcagaggaaa ctctctgtga tatacatcca atatccagca gcaccctcag      3300
     ggatttcgct tgggccatat caccaaacag agcaccggga aacgatggta taacaggcag      3360
     aatgttaaga gtgctttggc catgcttgga aagcagattc ttgtccctga caaatgcctg      3420
     tatggagaag gcgcactttc caggctcgtg gaagtccgca attgtagtac ctataagcaa      3480
     aggtgaagac agagaccccg gactgccgaa gtcttacagg ccggtgagcc ttttgccgac      3540
     catgggcaag atcctggaga aggtgataaa ccacaggcta caggagcaga tccagcctaa      3600
     ttatactggc aaacagtatg ggtttaccag tggcaaatcc accatggacg cggtgggcaa      3660
     tctcctgctg tggaacaccc agagggcgga gaaatacgcc atgactgtgt tcctagatat      3720
     atcgggagcc tttgacaacc ttgcgtggcc agccttacag tcagatctgg agtccattgg      3780
     agcaacacca cacatgagga gatggatagc ggattacctc tcaggccgca ccgccacaat      3840
     gactgtgggt ggaatcacta aggatgtcag agtaacaaag ggctgccctc aagggtcaat      3900
     cttgggcccc atcttgtgga acgttacgat ggaagcccta ctgagaacaa catacccgga      3960
     gcacgtagcg atccaggcgt atgctgatga tatcgccatc agcattgcgg cacaaaccag      4020
     ggtgtcactc attcagcggg cagaagaagc gctaaggcca gcactggaat gggcacacca      4080
     caggggtctt acgttctccg cacagaagtc ccaggccatg atcactaagg gcagccttgc      4140
     agcagggttc acaattgcat ttggaaccga cagaattgcc acagtggact gtataaaata      4200
     cctaggcatc tggctggatg aagagaggtc attcaagcgt cacgtagaga agctcctggg      4260
     taccgagcat acgctcttca cccgtctccg tggaacaatg ggtgacggct ggggcaccaa      4320
     gcgaaccaac cttatgacac tatacagatg tgtgtttctg cccaaggtgg catacggtgt      4380
     tcggttctgg gcacatgcta tcgtttcgaa ggcggctatc gccaaacttg gatcgctcca      4440
     gaggagagca ttaataggaa tgacgggagc ctatagatcc acgtccacgt tcgcgctcca      4500
     gatcctcgca ggtgtacctc ctctagacct ggagttaggt tggattgcca tcaaagagga      4560
     agcgaagctc cttccggacc atctcagaac cgcaaccatc ggagcggctg ctgacgagct      4620
     tctggatact tggcaagagc gctggtcgga cactcagaag ggaaggtgga cctatgaatg      4680
     tttccctgat gtcaggtgca ggctaaaact cccacttgcg ttaggtcacg aaatctcgca      4740
     attcctaact ggccatggga acttcaacag caaactcacg gagttagggt taaagcaatc      4800
     cccgcgctgt gcatgtgata cgggcgatga ggacgttagg catgttgtat acgactgccc      4860
     cacccatgaa ccacacaggg cccgtctcga gctggcagct cacagagccg gatacgtatg      4920
     gccatgcgaa atggcaacac tgacttcaaa caaggcaact tacattgcgc tcgtaaagtt      4980
     tgcgaaggta gccgcatact ttgagaggcc acaacctcgt ggttagcagg acgggtaaga      5040
     cactctgcgt gccagagtgc caaaccccgc atgtgaactg aacgagtgtc aaggtgtgag      5100
     aaggcagaag cggctcatat gcggggccgt cctgagggga cactcgtgcg tcggggacgc      5160
     gggcggcgct gacgcggaca acagtggttc gcggacaacc gga                        5203
//
ID   R1-4_BM     repbase;    DNA;    INV; 3196 BP.
XX
AC   .
XX
DT   25-APR-2010 (Rel. 15.07, Created)
DT   25-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3196
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1050-1050 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           759..3194
FT                 /product="R1-4_BM_1p"
FT                 /translation="MSRVCDAAMPRVRALAPKRRVHWWTEEIASQRRLCDV
FT                 SRRAYQRYRRRRTRRDPDEEDRLYEVYRTAIRALRVAIGEAKEAAWNDLLA
FT                 SLDRDPWGRPYRLARNALRPWAPPATSTLPPETLRRVVGGLFPDXXGTAFV
FT                 PPVMTTARVADGGEPEDVSQAEFDSAVQRMRAKRTAPGPDGISSRAWALAL
FT                 TGDGLGPALRGLFSRCLREGRFPEPWRTGRLVLIPKEGRPRDEPSGYRPIV
FT                 VLDEAGKLLERVVAGRLVQHLESVGPDLAPNQYGFRRGRSTVDAVLRVRHL
FT                 SDRACSGGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPTGLRTLIEDYL
FT                 SGRXVVFPERRGWGRKAVSRGVPQGSVLGPLLWDIGFDWVLRGASLRGVDV
FT                 VCYADDTLVTARGDDYRXAAILAAAAVATVVSRIXRLGLEVALHKSEAVCF
FT                 HPARRGPPPGAXLVVGGVSIAVQPKLKYLGLVLDSRWSFDHHFGELVPRLL
FT                 GTAGALARLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWSPALSARNAALL
FT                 LRAQRALAVRVIRGYRTISREVACALAGSLPWDLEAEVLAAVYRRRTQSPS
FT                 RGRTPGPSAVGRWRRAARRLAYAKWRERLLEELGRTSATRRRTLEALVPVL
FT                 EAWSDRRHGVLSFRLTQVLSGHGCFGRYLWRVCGREPHPGCHQCGHPDDDA
FT                 QHALEACPRWEHPRRDLVAVLGXDLSLRAVVARMVEDGSSWGAMAGXADLV
FT                 MASARLRSAPCATVVSWNRRXRXXXXXSXRSSXLEAPESDIARSVAPLDRV
FT                 SVNGFPSXKK"
XX
SQ   Sequence 3196 BP; 436 A; 994 C; 1157 G; 577 T; 32 other;
     gaccgcagcc gngattgcgc taccggtgcg gccagaccgg ccacgtggcg gccggctgct        60
     ctctcgcgcc acactgcgct gtatgtgccg ctgccggcag accggcggac cacgtctccg       120
     ggagcaaggc ttgtgccaag tccccgagac cgagacttag aagaggagct tccgctgcac       180
     ttgaaaatgc acggaggcag cccggtacgg ctatggagac atcgaatgac gccctgttat       240
     gacaggtgtc cttcgattcc tgcaggggaa tctcaatcac tccgccagag ctcaggacct       300
     tttgttccag agcatggcgg aggggttgac ccatcttgcg gtggtcgccg agccgtatcg       360
     ggtcccttcg agccccgatt gggcggccga tttggagggc cgagtggcna tcatccggcg       420
     ttgttgtgtg ggtgctccgc ccaggttcga cgttgtcgag agaggtcgcg gcttcgttgc       480
     cgtcctctgg gccgaggtat tcgtgttggg agtgtacttt tccccaaaca ggacgctcgc       540
     cgagttcgag gttttcctca gcgagctcag ccgcgtcgtt gggaggtcgc actcccgacg       600
     gatnctcgtt ctcggggacc tcaacgcgaa gtcattggct tggggttcct cgaggacgtg       660
     ccccagaggt agggcggtgg aggagtggct ggtcggaagc ggtctcctcg tcctcaatcg       720
     cggacgtgtg cgagggggtg gagcgtctgc gcgaggcgat gtcgcgggtg tgcgacgccg       780
     ctatgcctcg cgttagagct ctcgctccta agcgccgagt ccactggtgg accgaggaga       840
     tcgccagcca gcgccggctg tgcgacgtca gtcgtcgcgc ataccagcgg tatcgacgnc       900
     gaagaacgcg ccgggacccc gacgaggagg accgcctgta cgaggtgtac aggacggcca       960
     taagggccct gcgcgtggct atcggggagg cgaaggaggc cgcctggaac gacctactgg      1020
     cctcgctgga ccgtgacccg tgggggcggc cctacaggct ggcgcgcaat gcgctccgcc      1080
     cttgggcccc ccccgcgacc agcaccctgc cgccggagac attgcggcgg gtagtcgggg      1140
     gtctgtttcc ggatttnncc gggacggcct tcgtcccccc tgtgatgacg acggcgcggg      1200
     ttgctgatgg cggggagcct gaggacgtct cgcaggcgga gttcgattcg gccgtgcaga      1260
     ggatgcgggc gaagcgcacg gcgcccggtc ccgatgggat ctcgtcccga gcgtgggcgc      1320
     tcgccttgac gggcgacggc ttggggcctg ccctccgagg gctgttcagc aggtgcctcc      1380
     gtgagggcag gttcccggag ccatggagga ctggtcggct cgtccttatt cctaaggagg      1440
     gtcggccacg tgacgagccg agcgggtacc gcccaatcgt cgtgctggac gaggccggta      1500
     agctcctcga gcgcgtcgtc gccggtcgcc tcgtccagca cctggaaagc gtcgggcctg      1560
     acctggctcc taaccaatac ggtttccgga ggggtcgctc gaccgtggac gcggtcttgc      1620
     gcgtccgcca cctctccgac cgtgcgtgct ccgggggggg cgtgttgttg gctgtgtcga      1680
     tcgacatcgc caacgccttc aacacgatcc cctggagcac gatcgtggag tcgctncggt      1740
     ttcaccgcgt ccccaccggt ctccgcaccc tgatagagga ttacctctca gggcgggncg      1800
     tggtcttccc cgagcggagg gggtggggac ggaaagcggt gtcgcgcggg gtcccgcagg      1860
     ggtcggtact gggnccgctc ctgtgggaca tcggtttcga ctgggtcctc cgcggggcta      1920
     gcctgcgtgg cgtcgacgtg gtntgctacg ccgacgacac gctggtgacg gcccgcggag      1980
     acgactaccg gnccgcggcg atcctggctg cggcggcggt ngcnaccgtc gttagccgaa      2040
     tanggagact cggcctcgag gtggccctcc acaagtccga ggcngtgtgc tttcacccgg      2100
     ctcggagggg gccccctccg ggcgcgantc tcgtagtcgg nggagtctcg atcgctgtcc      2160
     agccgaagct caaatatttg ggcctcgtgc tggacagcag atggagcttc gaccaccatt      2220
     tcggtgagct ggtcccgagg ctgctgggga cggcgggtgc gctagcccgt cttctcccca      2280
     acgtcggtgg ttgcagcgcc ggtgtccggc gnctgtacct gggggtcgtg cgcagtatgg      2340
     ccttgtacgg cgctcccgtg tggtcgcccg cactctccgc gcgcaacgcg gctctgctgc      2400
     tccgagctca gcgggcgctc gcggtgaggg tcatcagggg gtaccgtacg atctcccggg      2460
     aggtcgcctg cgccctcgcc ggttcccttc cttgggatct cgaggccgag gtattggctg      2520
     cggtataccg gcgcaggacg cagtccccga gtcggggacg gacgcccggc ccgtcggctg      2580
     tcggtcggtg gaggcgtgct gcgcgtcgtc tggcgtacgc caagtggagg gagcggttgc      2640
     tggaggagct cggccgaact tcggccaccc gccggcgcac cctcgaggcc ctggtgcccg      2700
     tgctggaggc atggtcggac cggcgacacg gcgtgctctc cttccgcctc acgcaggtcc      2760
     tctcggggca tggctgcttc gggaggtacc tgtggagggt ctgcgggaga gagccgcatc      2820
     cgggctgcca ccagtgcggg catccggacg acgacgctca gcacgcgctc gaagcgtgcc      2880
     cgcggtggga gcacccgcgg cgagacctcg tcgcggtgct gggggnggac ctctccttgc      2940
     gggccgtcgt cgcccgcatg gtagaggacg ggagttcgtg gggggccatg gccgggtntg      3000
     ctgacctggt natggcgtcc gcgaggctga ggagcgcgcc gtgcgcaacg gtagtctcgt      3060
     ggaatcgcag ggngagggnn cntnggnctt ngtccngtcg gtcttcnnct ctggaggcgc      3120
     cggagtccga catagcccgg tctgttgccc ccctcgaccg ggtatccgta aacggattcc      3180
     ccagcnttaa aaaaaa                                                      3196
//
ID   R1-4_BTa    repbase;    DNA;    INV; 5921 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-5921
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 719-719 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..2375
FT                 /product="R1-4_BTa_1p"
FT                 /translation="MMNQNTEQSDPKDTPSLSSRTQTTPGTTTDETRMDKP
FT                 GRSGSQAEKSGNHLDNNDIILVYEDQSSRPDTQSEQSLRKEITELGLEMAK
FT                 LSDSSKNTDLKDNERKEILEAVNQLEKKKDDLTKLLPDYDPVIASKFRTST
FT                 PENMETETINPRKRSSSILNRSFSDPDLRINSRNQKPRIIDSSQKKILSFF
FT                 SKQTNSNEQLKDGEETTEEEDDSWKITGSRGRGRGRNRAIRTGKEKPTYSR
FT                 TPTPKQNPSKPKREVKNTSIPNLNTKPTSTQTQQNTSNACNSSEQPINPET
FT                 LFSSQKSDETNEEANNQKPGNDNEDKTQSLWEKYIKAHPTPDANALRRHFQ
FT                 KIYTFLEDHFISQQQIIKSDDKPVSQMSKDIQELKRHQSESQKKQQETMDE
FT                 LKAIKKILEKNNQTVQQSIKQIDKTMQQGVKNKEEYPALQPYAEKLKKNLQ
FT                 CIQIAKKNENIFNFELILKGERRALKKEEDNIIQFLMDKSKSFQNSKINSI
FT                 RFANEGATIQISSISTEKESLKTGLQKAINEVTKEQVDVSIRKSSEVMRIA
FT                 ALNASFSDEQIHGMIEENLNNPQFNREYIKENVRIFRRITSRFDTSKMTVF
FT                 MRVTSPLLETINSKREFLPTRNHFRRVTITPIIYISNCTNCFGFHPTSKCE
FT                 EKNLCKKCGSPDHKISECKGTTNCINCKRANRGKGTHDHLPTDKACPQLQR
FT                 EYERQTARCFREANPCILEELKQQNSNNLLTHITGIQYGQ"
FT   CDS           2368..5787
FT                 /product="R1-4_BTa_2p"
FT                 /translation="MDSDNKNSALRRTTENYIDSLFGNSLSRVENALKPPH
FT                 RRLPTNRRPPILCENKFSIFDNVTSRPRTTQYQDSSQIASHSPHHSTEKVL
FT                 LPTLNNVNTCNPSSFSKQLKLDKYFHSSQDRITQIENREVNEDKAVREPFL
FT                 ALLCNVNGSVDAHDFIRREELSKEAGIVLITEPNERKSELEGLYLGNAKTS
FT                 AARVTNKLKGMTSNWSGDEDFVSFQWKGITFINVYWSPNQKKQEMEEAINR
FT                 LGIFMDMKEPPFIVTGDFNARSTYWGDIKREERGKRMELFIEEKNLVIKND
FT                 SKKFIPTFIGNRGHSVVDLVLVSPEIANNVEMEVLTIHTHSDHRCLEIKYG
FT                 NREPNVNTTNRQGWFLNPKKYPEFCKKTREEIEKIKLTEKISPEICEEVIH
FT                 RISDSLFLRKENAPKKEPLYWWTREIGQIRSKCQRLRRDIMRERKKSRNGN
FT                 PQQTQKVNEIQQKWQELKNELTNKIRNEKQEKWKKLISDLDKDPWGNGYKI
FT                 IRRKLRNPKTYAASALDDEEITETVNNLFPDHGPTIFEETVFDTESVPVIT
FT                 ETELRTALSKIRIGKAPGPDQIAPILMKMFVDSNLKTILEMLNEFAKRGEF
FT                 PDVWKNARLALIPKGDPHARKFRPICMLNCISKLYEQILAGRILEGLELSP
FT                 KQFGFRKGYSTIKALRRLKDIFEMNRRDPIHRRKLMCILGLDIKNAFNSAE
FT                 YKDIINALERKRVAPYLIQSIKSYLKDRSITCEKLTFPVNSGISQGSVIGP
FT                 LLFIILFDEIVRLRTDPAAEKLVYADDILVILLCYNKQSLLNNSYRITNKI
FT                 KNKLKDKRLEVESNKSEATILWSKKVDREDAEIKVGETTIKTKDNMGYLGF
FT                 QLGKNFNMSCHINYVCEKAKKVARSYKCLLPNVNGPSFLKKKLIVNAIMSI
FT                 ILYGIQIWADGIKLKKNVNTIRKTLRPLKLXLCSGYRTCSDFALDIISGIP
FT                 PPELMVEERVRIMNKIEDKGEIRQDILRKWYNEIYWRDDRERWTRAVIGSN
FT                 FFDWMNRGHGVPDYYLTQFLTGHGCFGSYLHKFRIRENPGCFMCGAERDDP
FT                 DHAFFRCAYFRSERDTIQAAVNREIKKETVIKVMLETKANWNMVYRYIRLV
FT                 LETRNKVTNNRMPTPTQTEVVATAGSGPLENR"
XX
SQ   Sequence 5921 BP; 2322 A; 1104 C; 1140 G; 1349 T; 6 other;
     tgcagcatcc cggcttgttg acgcacagtg cagtgataca tgaaggagtg cattgaacac        60
     ggcaaaatct actgcagcgt gtgcaagtgc acctctcatg caaaacagat tgcgattctc       120
     gcagctgctt tgaagaaaag catcttacca tcaatatgat gaaccaaaat acggaacaat       180
     cggacccaaa agacacacct tcattatctt caagaacaca aacaacgcca ggaactacaa       240
     cggacgaaac gagaatggac aaaccaggac ggtcaggctc tcaggcagaa aaatcgggaa       300
     accacttaga caataatgat ataattcttg tttacgaaga tcagtcaagc agaccagaca       360
     cacaatcgga acaatcacta agaaaggaaa taacggaact aggcttggaa atggcgaaac       420
     tttcagatag ttccaagaat acagatttaa aggacaacga aaggaaggaa attttggaag       480
     cagtcaatca acttgaaaag aagaaagacg atcttacgaa actcctacca gattatgacc       540
     cagtcatagc aagcaaattt agaacctcaa cccctgaaaa tatggaaacg gaaactatta       600
     acccaaggaa aagaagctca tcaattctga atagatcttt tagcgatccc gatttaagaa       660
     taaactcaag aaaccaaaaa ccaagaataa tcgacagttc acaaaagaaa atcctttctt       720
     tcttttcgaa acaaacaaac tctaacgaac aactgaaaga cggagaagaa acaacagaag       780
     aagaagatga ctcatggaaa attacaggaa gcagaggaag aggaagagga cgtaatcgtg       840
     ccattagaac aggaaaagag aaacctactt attcccgtac accgacacca aagcagaatc       900
     catcaaaacc caaaagagaa gtgaagaaca cctccattcc aaacctcaac acaaaaccaa       960
     catcaactca aacacagcaa aacacatcaa atgcatgtaa tagtagcgaa caaccaataa      1020
     atccggaaac actattttct tctcaaaaat ctgatgaaac caatgaagaa gcaaataacc      1080
     aaaaacccgg aaatgacaat gaagacaaaa cccaaagtct atgggaaaaa tacattaagg      1140
     cccatccaac accagatgcg aacgctctga ggcgccactt ccagaagatc tatacgtttc      1200
     ttgaagatca cttcattagc caacaacaga tcatcaaatc ggatgacaaa cctgtaagcc      1260
     aaatgtctaa ggacatacag gaactgaaga gacatcaaag tgaatctcaa aagaaacaac      1320
     aagaaactat ggacgaactt aaagctatca agaaaatctt ggaaaaaaac aatcagactg      1380
     tacaacaatc tattaaacaa atagacaaaa ccatgcaaca aggcgtgaaa aacaaagaag      1440
     agtaccctgc cctacaaccc tacgctgaga aacttaagaa aaatctacaa tgtattcaaa      1500
     ttgcaaaaaa aaatgaaaat attttcaact ttgaattgat attgaaaggg gaacgcagag      1560
     cactgaaaaa agaggaggac aacatcatac aatttttgat ggacaaatcg aaatctttcc      1620
     aaaactctaa gataaattcg ataagatttg ctaacgaagg agcaactata cagataagca      1680
     gtatctcaac cgaaaaagag agtctgaaga ctggactcca gaaggcaata aatgaggtaa      1740
     cgaaggaaca ggtggatgta tcaattagaa aatcatcaga ggtcatgagg atcgcagcac      1800
     ttaatgccag tttttcagat gaacagatac acgggatgat cgaggaaaat ctcaacaatc      1860
     ctcagtttaa tagagagtac atcaaggaga acgtgaggat ttttagaaga ataacatcaa      1920
     gattcgacac ctcaaaaatg acagtattta tgagagttac ctcccctttg ttagaaacaa      1980
     tcaacagcaa aagagaattt ctcccaacac gaaaccactt cagaagagta acaattaccc      2040
     ctataattta catttcaaac tgcacgaatt gcttcggctt tcaccctaca tccaaatgtg      2100
     aggagaagaa cctctgcaaa aaatgtggct caccagacca caaaatatca gagtgcaaag      2160
     gaaccactaa ttgtatcaat tgtaaacgcg caaatcgagg aaaaggaacc cacgatcatt      2220
     taccaactga caaagcttgc cctcaactac aacgagagta cgagagacaa actgcaaggt      2280
     gcttcagaga agcaaaccca tgcatattgg aagagctcaa gcaacaaaac agcaacaacc      2340
     ttttgactca cattaccgga atacaatatg gacagtgaca ataaaaattc agcgctaaga      2400
     cgaacaacag aaaattacat agattctctt tttgggaatt ccctgtcaag agtagagaat      2460
     gctctcaaac ccccccatcg tcgactaccg accaaccgcc gaccgcctat cctgtgcgaa      2520
     aataaatttt ctatttttga taatgttaca tcccgaccca ggacaactca atatcaagat      2580
     tccagtcaaa tcgcctccca ctctcctcat cattcaaccg aaaaagtgtt attacctact      2640
     cttaataatg taaatacttg taatcctagt tcattcagca agcaactaaa attagataaa      2700
     tactttcaca gtagtcagga tagaataact caaatagaaa atagggaagt aaatgaagat      2760
     aaagctgtaa gagaaccctt cctagccctt ctgtgtaacg tgaatggaag tgttgatgca      2820
     cacgatttca ttagaagaga agaactaagt aaagaagctg gaatagtttt aatcacagaa      2880
     ccaaatgaaa gaaagtcaga gttggaaggt ctatatctag gaaatgctaa gacttctgct      2940
     gccagagtca cgaataaatt aaaaggaatg acctcaaatt ggtcaggtga tgaggacttt      3000
     gtctcgttcc aatggaaggg aattactttt attaacgttt actggtcccc caatcagaaa      3060
     aaacaagaaa tggaagaggc aatcaataga cttggcatat ttatggacat gaaggaaccc      3120
     ccatttattg taacaggtga cttcaacgcg agatccacat actggggaga tataaaaaga      3180
     gaagaaagag ggaaaagaat ggaactattt attgaagaga aaaatttagt aatcaaaaat      3240
     gactccaaaa aattcatacc aacttttatt ggaaacagag gtcactcggt tgtggatctt      3300
     gtgttggtgt ctcctgagat agcgaataat gtggaaatgg aagtattgac aatccataca      3360
     catagcgatc ataggtgctt agaaattaaa tatggtaata gggaaccaaa tgtaaataca      3420
     acaaacaggc aaggatggtt tcttaatcca aaaaaatacc cagaattttg taaaaaaact      3480
     agagaagaga tcgagaaaat taaactaaca gaaaaaattt cacctgaaat atgtgaggag      3540
     gttattcaca gaatcagtga ctctctattt ttaagaaaag aaaatgcccc taagaaagaa      3600
     ccactctatt ggtggactag ggaaatcggc cagattagaa gtaaatgcca aaggcttaga      3660
     agagacatta tgagagaaag gaaaaaatct agaaatggaa atccccaaca gacacaaaaa      3720
     gtcaatgaaa tacaacaaaa atggcaagag cttaagaatg agcttactaa caaaattaga      3780
     aatgagaagc aagaaaaatg gaagaagtta atatctgact tagataaaga tccctgggga      3840
     aatggttaca aaataattag gagaaagctc agaaacccca aaacatacgc cgcctctgca      3900
     ttggatgacg aggagatcac tgagactgtg aataatttat tccctgacca cggcccgaca      3960
     atcttcgaag aaacagtctt tgatacagaa tccgtgcctg taattacaga aactgaactg      4020
     agaacagcgt tatctaagat taggataggt aaggccccgg gtcctgacca gattgcacca      4080
     atattaatga aaatgtttgt tgattctaac cttaagacga tattggagat gctaaatgaa      4140
     tttgcaaaga ggggggagtt cccggacgtg tggaaaaacg ctagattggc tcttatcccc      4200
     aaaggtgatc cgcacgctcg gaaattccga ccaatatgca tgctcaattg tatcagtaaa      4260
     ttatatgaac aaattttagc gggaagaatc ttggaaggcc tagaactttc tccgaaacaa      4320
     tttgggtttc gtaagggtta ttcaactata aaagcactac gtagacttaa ggacattttt      4380
     gaaatgaata ggagagaccc gattcaccgg aggaaattaa tgtgtatttt aggtttagat      4440
     atcaagaacg catttaactc cgcagaatat aaagacatca ttaatgcact tgaaaggaaa      4500
     agagttgccc cgtacctaat acagtcgata aaaagttacc tcaaagacag atctatcact      4560
     tgcgaaaagc tcacatttcc ggtaaatagc ggtatcagtc agggttcggt gatcgggcct      4620
     ctcctattca tcatcctctt tgatgaaatt gttaggctta ggaccgaccc cgctgcagaa      4680
     aaactcgtat atgccgacga tattctagtc attttgttat gttacaataa acaatcattg      4740
     cttaacaatt cctatagaat caccaataaa atcaaaaaca aattaaaaga caaaagacta      4800
     gaggtagaaa gtaataagtc ggaagcgaca attttatgga gcaaaaaagt agatagagaa      4860
     gatgctgaga tcaaggtagg agaaaccacc atcaaaacca aggataatat gggatatcta      4920
     ggttttcaat taggtaagaa ttttaatatg agctgtcata tcaattatgt atgtgaaaaa      4980
     gcaaaaaagg tcgcaagaag ctataaatgt cttttaccaa acgtaaatgg cccctctttc      5040
     ttaaagaaaa aactaattgt aaatgccatc atgtcaatta ttctctacgg aattcaaata      5100
     tgggcagatg gaattaaatt aaagaaaaat gttaacacta tcagaaagac attaagaccc      5160
     ttaaagttgw cactctgcag cgggtatcgg acatgttccg attttgcttt ggatataatc      5220
     tcgggcatcc ccccccctga attgatggtt gaggagagag taagaataat gaataaaata      5280
     gaagataagg gagagattag acaagatata ttgagaaaat ggtacaatga aatatactgg      5340
     agagatgaca gagagaggtg gacgagagca gtaatcggta gtaacttttt tgactggatg      5400
     aacaggggac atggtgtccc agattattat ctgacacagt tcctgacagg gcacggctgt      5460
     tttggatcat atctacataa gttcagaatt agagaaaacc caggatgttt tatgtgcggc      5520
     gcggagaggg atgatcctga tcatgcwttc ttccgctgcg catatttccg ttcggaaaga      5580
     gatacgatac aggcggccgt gaaccgcgaa atcaaaaaag agacagttat taaggtcatg      5640
     ttggaaacaa aagcaaattg gaacatggta tataggtata taaggttagt cttagaaact      5700
     agaaataagg taacaaataa taggatgcca acccccacac aaaccgaagt agtagccacg      5760
     gctggttccg gtcccttaga aaatagataa attatactgt aattacttam atttaagact      5820
     wctgaagtgt attgttaact tmtgattttt gagtaccatt tataataatc gtgtaataac      5880
     tattttcttt gaataawaaa aaaaaaaaaa aaaaaaaaaa a                          5921
//
ID   R1-4_DAn    repbase;    DNA;    INV; 5089 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5089
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 401-401 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           349..1965
FT                 /product="R1-4_DAn_1p"
FT                 /translation="MMYTNDITPGGNHSSGNPPVGKPTAGARILEAPKHIP
FT                 KPTDEAVASLAAPADPATSQNVEQSSAFMSSSKILRSPILQAARTAARKEP
FT                 NAEKETPKRARDTSSPSEPQRATPAKKTKAASERSCAGMLTELEGILEDII
FT                 LQTHEKQVRSINLKMKRMFCRMKELQEGLSGALTCQIDESQPGSISETICS
FT                 RCGQQDVPMADKQAQTLPLRRKEVSVQTEPWRRLSQDSTKTHLQEEQQAPA
FT                 QALRKSARLGPVQRTVNRPSNGRAEGAGLSTPADAAEAGPRWETAKRKKPR
FT                 TTTRPDALVVEAKGLKYSEVLAMVTRRQDGQLNDFSQDVRKVRRTASGNLL
FT                 LELNKNRTASTDVMRENLEKVLQGAAEVRALSEDSKLRFMELRDLDPLVNE
FT                 GDIREAMVEQFNLAGDAVLIRSLRGTSRDTQTAIIGLPNKKAAEVASKGRV
FT                 RIGWTVCRIRERDNQPRCYRCLEVGHIAGKCRSTTDRSGCCIRCGEKGHKI
FT                 ARCPNESLCFVCAERGERDTKHQAGSRRCPHSKVAVQARAGWK"
FT   CDS           join(1959..2462,2308..4899)
FT                 /product="R1-4_DAn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEVIQLNLNHCRAAQDLLRHSVVEARADLAILSEPYS
FT                 VGLGEEWATDTSGKAAIWFCNGTMEAPSRVKRGEGFVRAQWKGTWVYSCYL
FT                 APSLTHDAFCKVLEEIVIDARGRHPVLIAGDFNAWAQEWGCSTTNARGRAL
FT                 LEILAPLDLALLNEGNQETFNRAGADLHGQGTSMHGPRSGGVAPQTPEVEP
FT                 CWRYWLPWTWRYSTRVTRRPSTEQEQTFTASDHEAILCTLVAGRADPNPPY
FT                 SGKAYRQDTLDVQTVINRAQSATVVPLASANETAAALAEVLDEVCRASMRP
FT                 RTTYSRYHKPTPWWNSEIALLRKECLKARRALQRERGTDAQEERRLEFKAA
FT                 RKALKKAIRESKREVFLKLCDEAEHDPWGQAFRIVTKKVRAGNQAPSDPEE
FT                 LRGIIDVLFPNEQNEGSRPNLNENDEAESVNDEVESVELVTADEVRKAASK
FT                 LAPSKAPGPDAVPNRALKIILALIPEKMAVIFNQCLLEGTFPAIWKMQRLL
FT                 LLPKPGKPPGQAASYRPICLLDSVGKVLEKIVATRLQAAISRVGGLAAEQY
FT                 GFRKGRSTVDAIRRVKDLAARAIQGTRWEGGTKKYCLVATLDIKNAFNTAN
FT                 WSRTLEALRKMKIPRYLLRMVDSYLSNRTLLFDTTEGRKEREVTAGVPQGS
FT                 VLGPLLWNVMYDGVLRIPMAEGTSVIGFADDVAVVVVAKTVREVEAAANRA
FT                 IEKVEAWLSTAGLQLAPHKTEAVLISSRKKVETATVRVGGVAITSKRAIKY
FT                 LGVMLDTRLSFREHLEYAHKRASETIRALSRMLVNIRGPRQERRKLITSVV
FT                 SSQILYAAPVWAEATSVRAYVRGIEADYRLCALRTSCAFRTVSDDAALVIA
FT                 GLIPLRELVRERSELAETAQDETTSASARKLAARARSLANWQILWANSTKG
FT                 RWTHRLIPDVGLWIGRKHGEVDFYMTQALSGHGCFRSYLKRFGHEREDGCP
FT                 SCGRGVMEDAYHVLFDCRRFDEDRSNLEESLEEIFSPERMVPLMMESGRKW
FT                 EATAKFVAKVMKELRALERVRNGGED"
XX
SQ   Sequence 5089 BP; 1359 A; 1306 C; 1585 G; 838 T; 1 other;
     gaagaattca tagctctctt ttggagggcg ggcctgagat aaggaacagt gcacaaggtc        60
     atggatcgga ccgatttcca acccccccgc cgcggcggtg cacgctggaa aacggggctc       120
     tggtgaccga gcaggggcgg tatatccccc atcgtggcat cgatggttac cgccctccac       180
     ttttcatctt cttcttcctc tactccaccc caaacccacg tagcgtctgt cccacattgg       240
     gcggctacgc ggtctgcgtc ggagccatag tggccggcag tacccaccca cctggcagta       300
     ggtataaaat gcaaacctgg cagtaggtat aaaaagcaaa cccgaaggat gatgtacact       360
     aacgacatta ctccaggtgg caaccactca agtggaaatc cacccgtggg gaaacccacg       420
     gccggggcac ggattctgga ggccccaaaa cacatcccaa agccaactga cgaggcggtg       480
     gctagcttgg ccgccccggc agatcctgcg acaagccaaa acgtggagca atcttcagca       540
     ttcatgagca gctcgaagat actgcgttca cccatcctgc aggcggcacg gaccgccgcg       600
     agaaaagagc cgaatgcaga gaaagaaacc cccaagaggg cgagggatac ctcaagcccc       660
     tcggaacctc aaagagcgac accggcgaag aaaaccaaag cagcaagtga gcggtcctgc       720
     gccggcatgc tgactgaact ggaggggatt ctggaggaca tcatcctcca aactcacgag       780
     aagcaggtga ggagcataaa cctgaaaatg aagaggatgt tctgcaggat gaaggagctg       840
     caggaaggac tcagtggtgc tctcacttgc caaatcgacg agagccaacc ggggtcgata       900
     tcggagacta tctgctcgag atgtggtcag caagatgtcc cgatggccga caaacaggcg       960
     cagaccttgc ctttacggcg aaaagaagta tctgtacaga ctgagccatg gcgacggcta      1020
     agccaggata gcacgaagac ccatctgcag gaggagcaac aagcacccgc tcaggctctg      1080
     aggaaatccg ctaggctagg tcccgtccaa aggaccgtca accgccccag caacggaaga      1140
     gctgagggcg cgggactgag cactccagct gacgccgctg aagcaggccc gcgatgggaa      1200
     acggcgaaac ggaagaagcc caggacgacc actcgccccg acgcgctggt agtggaagcc      1260
     aaggggctta aatatagtga ggtcctggcg atggtcacca gacgacagga cgggcaactg      1320
     aacgatttta gccaagatgt gcgcaaggtg cgccgaactg caagcgggaa tcttctgctg      1380
     gagctcaaca agaatcgcac ggccagcacg gacgtcatga gggagaatct tgagaaggtg      1440
     ctccagggag ctgcagaggt gcgagcgttg tccgaggaca gcaaactccg gttcatggag      1500
     ctaagggacc tcgatccctt ggttaacgaa ggggacatac gcgaggcaat ggtcgagcag      1560
     ttcaacttgg ccggagacgc agtcttgatc aggagcctgc gagggacctc aagggacacc      1620
     caaactgcca tcatcggact cccaaacaag aaagcggcgg aggttgcaag caaaggaaga      1680
     gttaggattg gttggacagt gtgtcgcatc cgcgaaaggg acaaccaacc gaggtgctac      1740
     agatgcctgg aagtcggcca tattgctggt aagtgcagaa gcaccactga taggagcggg      1800
     tgttgcatcc gttgcgggga gaaagggcat aagatagcca gatgccccaa cgaaagctta      1860
     tgctttgtgt gcgcagagag gggtgagcgg gacaccaaac accaagccgg tagccggcgg      1920
     tgtccgcact ccaaggtggc ggtacaagcc agagcaggat ggaagtgatt cagctcaatc      1980
     tgaatcactg tagggcggcg caggacctcc tgcggcattc ggtggtcgaa gcgagggcag      2040
     acttggctat cctaagcgag ccgtacagcg tcggactggg agaagagtgg gcgacggaca      2100
     cctctggaaa ggcggcaatc tggttctgca acgggacaat ggaagcgcca agtcgagtca      2160
     agaggggcga aggattcgta agagcacaat ggaaaggcac ctgggtatat agctgttacc      2220
     tagctcccag cctgacccac gatgctttct gcaaggtctt ggaagaaata gtgatcgatg      2280
     ccagaggcag gcacccagtg ctcatagcag gggacttcaa tgcatgggcc caggagtggg      2340
     ggtgtagcac cacaaacgcc agaggtagag ccctgctgga gatactggct cccctggacc      2400
     tggcgctact caacgagggt aaccaggaga ccttcaacag agcaggagca gaccttcacg      2460
     gctagcgacc atgaagcaat attgtgcaca ctggtagcgg gccgggctga ccctaaccca      2520
     ccctacagtg gaaaggcgta ccgccaggac accctcgacg tccaaacagt aataaaccga      2580
     gcgcagagcg cgactgttgt cccccttgcc tcggccaacg aaacggcggc agcacttgct      2640
     gaggtattgg acgaggtctg cagggcaagc atgaggcctc gaacgaccta ctcgcgttac      2700
     cacaaaccga cgccgtggtg gaacagcgaa atcgctttac tccgtaagga gtgccttaag      2760
     gccaggagag cgctgcaacg cgagcgcggt acggacgcgc aggaagagag acggttggaa      2820
     tttaaagcgg cgaggaaagc cctaaaaaaa gccatacggg aaagcaaaag ggaggtcttc      2880
     ctaaagctgt gcgacgaggc tgaacacgac ccgtggggcc aggccttcag gattgtcacc      2940
     aagaaggtaa gggcaggcaa ccaggcgcct tcggaccctg aggaactgag gggcattatc      3000
     gatgtcctct ttccaaacga gcagaacgag ggatcgcggc cgaacctgaa cgagaacgac      3060
     gaagcggagt cggttaacga cgaagtggag tcggtggagc tggtcacggc ggatgaggtg      3120
     cgtaaggcgg ccagcaaact agcccccagt aaagcccctg gcccggacgc ggtgccaaat      3180
     agggcgctga agatcatcct ggcgttgata ccggagaaga tggccgtcat tttcaatcag      3240
     tgtctactgg agggcacctt tccggcaatt tggaagatgc agaggctact cctcctgcca      3300
     aagcctggta agccacctgg gcaagcagca tcgtacagac cgatctgcct gctagactcc      3360
     gtgggcaagg tgctggaaaa aatagtagca acgagactac aggcggccat aagcagggtc      3420
     ggcggcctgg cagcggagca atatggcttc cgaaaaggcc ggtctacggt ggacgccatc      3480
     agacgggtta aggacctggc agcacgcgcc attcaaggca cccggtggga agggggcacc      3540
     aaaaagtact gcctggtagc aaccctcgat atcaagaacg cctttaacac agcgaactgg      3600
     tcgcggacgt tagaggcgct gaggaagatg aagatacccc gatacctcct aaggatggtg      3660
     gacagctact tgagcaacag aacacttcta ttcgacacga ccgagggacg caaagagcgc      3720
     gaggtcaccg ckggagtgcc ccaaggctca gtgctcgggc cactgctctg gaacgtaatg      3780
     tatgatggtg ttctccggat tccaatggcc gagggaacat ccgtaattgg attcgccgat      3840
     gacgttgcag tggtggtcgt ggcgaagaca gtccgggagg tggaagctgc tgcgaaccgg      3900
     gcaatcgaga aagtggaggc ttggctgtcc accgccggac tacagttggc accgcacaag      3960
     acggaggcag tgctaatctc gagccgtaaa aaggtggaaa cggcgacggt ccgagtagga      4020
     ggagtggcca tcacatcaaa gagagccata aaatatcttg gtgtgatgct ggacacgagg      4080
     ctctcattcc gggagcacct ggaatatgct cacaagaggg caagtgagac gataagggca      4140
     ctctcacgca tgctggtcaa cattagaggc ccgaggcagg aaaggcgtaa gctgatcacc      4200
     agcgtggtaa gctcgcaaat actgtatgcc gccccggtgt gggccgaggc aacgtctgtg      4260
     cgggcttatg tgcggggcat cgaggccgat tataggcttt gtgcgttacg cacgtcatgc      4320
     gccttcagaa cggtgtcgga cgacgcggca ctcgtgatcg ccggtctcat tccgctaagg      4380
     gaactggtcc gggagaggtc agagctggcc gagacggcgc aggacgaaac cacgtcggcg      4440
     tcggctagga agttagcggc gagagccaga agcctggcca actggcagat cttatgggca      4500
     aactccacaa agggacgctg gacgcatagg cttatcccgg acgtgggctt atggatcgga      4560
     agaaagcacg gtgaggtgga tttctatatg acccaggccc ttagcggaca cgggtgcttc      4620
     agaagctacc tgaagcgatt cgggcacgaa cgagaggatg gctgcccctc atgtggcagg      4680
     ggggtcatgg aagacgccta ccatgtccta ttcgattgcc ggcgcttcga cgaggaccgc      4740
     agcaacctgg aggagagcct ggaggagatc ttctcaccag agagaatggt gccactgatg      4800
     atggagtcgg ggcgcaaatg ggaagccaca gccaagtttg tggcgaaggt catgaaggag      4860
     ctgagagccc tggagagggt gcgtaacggg ggggaggatt aagctgcagg agttgggcga      4920
     agcattgctt tacggccgta ccgtccaaca caacagcatc aagttcctct agccccatta      4980
     acaacttaaa ctatagtaat gtaaataatt ggtataaata attggattaa tgtaacatac      5040
     gagaaaataa ataaaatacg aatataaaaa aaaaaaaaaa aaaaaaaaa                  5089
//
ID   R1-4_DBp    repbase;    DNA;    INV; 4992 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-4992
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 729-729 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           672..1376
FT                 /product="R1-4_DBp_1p"
FT                 /translation="MEXFNXTTPGGTHNSGNPPAGTPAVRARILEALPYVP
FT                 KXTAPPAAHLAGDQASATSETLEELQAFGRGNKIKRTPPKQTASDHTPKRH
FT                 RDELSPPGNSQPGKKSKMPLTPIDEMGAILEDLLAKVNDQKVRSINQVMKN
FT                 SFARLKELQELLRDQTLTAPSQEGRARCGCSGEAPGCSSSRVEEATQTSPE
FT                 RASYSQVARTKRPREMPPPNRANQNGKKDAKLSQQTGHPTARWQT"
FT   CDS           1731..4838
FT                 /product="R1-4_DBp_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MCRVRERTAQRRCFRCLSFGHIAAFCKERTDRSDWCF
FT                 ETKQRMRFIQINLNHCEVAHSLLEQVLREKRADIALISEPYKKGETQSYIL
FT                 DSSKTAAIWAPGRQPESVQPREGFIRAKVGAFWLYSCYLPPRLTLQQFTHT
FT                 LDEIAQDARHRSQVVIAGDFNAWAEEWGSSRTNARGRTLQETFATLDVALL
FT                 NTGSQNTFSKAGYGSIVDLTFCSSGLFRRTRWSLSDDYTASDHKYIVCDIE
FT                 DRAQASTTAKPPRFNPATLQPQIFAQELRIPDPSGDAERDVHNTMAAVLQA
FT                 CRASMRCSRGHSRHHEPVPWWSPEIAHARRECLRTRRLHQRARGRPDFEQK
FT                 REDFAAKRKILKKLIREAKTRCFLEMCDAAEQDPWGSAYRTVVKKAKQAKP
FT                 IAPKEAATMRAIVEHLFPTQPREWSPVPSGAREPAGSTPAQEIGAHEIVEV
FT                 AKAIQVGKAPGPDGIPDSAIKLAMTACPDRFARVFNACLREGVFPRRWKVQ
FT                 SLVLLPKPGKPPEDPSSLRPICLIDHAGKALERCICRRLQEAVIRAGDLSP
FT                 LQYGFREHRSTVDAISLVRRIAAKAIEGTRWAGGSKEYCLIATLDIKNAFN
FT                 TARWDVIVEALRNLRVPTGIVEVIRSYLSDRTIRYETTSGIREHAATCGVP
FT                 QGSVLGPALWNVMYDGVLRLELPERTHLVGFADDIAVVVVAKTIQEAEEHC
FT                 NAAIAKVIGWLEQAGLSLAHHKTEAVLISSRKRVETATINVGGHVVTSTRA
FT                 IRYLGVTLDTRLSFREHFAEANRKAANVARALGRIMLNCRGPKQGRRLLLQ
FT                 TVCSATMLYAAPVWAEAAKTRSYTKGLTSTYRLCALRVCSGFRTISDDAAL
FT                 VIAGMVPIDLLAAERQELHQALAALSGQAPAATRRRLKESSRATSIQKWQQ
FT                 RWDESTKGRWTHQLVPDLKKWLQRSHGEVNFWLTQVISGHGCFRSYLYKFG
FT                 HDDDPRCPECGVDETAEHVVLDCPRFSVPRRRLLGEVATADLIGRRLLEDA
FT                 QFWAGMSSFAALTMKELRRLERLRAEARLA"
XX
SQ   Sequence 4992 BP; 1272 A; 1405 C; 1470 G; 820 T; 25 other;
     caactttcgc tggtcggaag ttggcggtcg cacagtgcgg acgcaccgcg gssgagctcc        60
     kwgtaaatcg tagctttwcc ckgtcgkgct gcacgatwaa gtgtaagcaa gacgtcaggt       120
     ggccattgcg aggcgcaagc tatgctcacc tgccgaaggm ggkgagttcc tagaacgctg       180
     gtggcatctg ctccgatcct gactcctagg acaggggcgc aaggggtaag cagtgcctct       240
     cttggctctt ctccgctack ctcttcctgt ggcttcctct ktcctttttc cgcgggawww       300
     tcccgcggca aacackctgt gctggtagag gtcgtggatc tctatagcag ctgatcttca       360
     gtgctgggca ctgaacgtcc gccccgaact taaatgccaa ccccaccgcc gtggcggtac       420
     acacgtgaaa cggggcactt gggaccgagc aggggcggta taaaccacca tcgtagcttc       480
     gatggaagtt ccctcctctt cttcgtccct ccccccccat ccaaataaac ccacggtgcg       540
     tctgacccac aatgggcggc ggcgtggtct gcgtctgcgc cacattgkcc ggcagcaats       600
     wcacctggca ggaggtataa actgcaaaaa acctggcagc aggtataaaa tgcgacttwa       660
     awcaaaacgg aatggaagaw tttaacgwaa ctactccagg tggcacccac aatagtggaa       720
     atccacccgc gggaaccccc gcggtcaggg caaggatcct ggaggcccta ccttacgttc       780
     caaaamaaac tgctccaccg gcggcgcact tggccggtga ccaagcatca gctacaagtg       840
     agaccctaga ggagctccag gcgttcgggc ggggtaacaa aataaagaga actcccccca       900
     agcagacggc gagcgatcat accccgaaga ggcatcggga cgagctgtct ccgccaggaa       960
     attcccaacc ggggaaaaaa tcaaaaatgc cgctaacccc catagacgag atgggcgcga      1020
     tcctggagga ccttttggct aaggtgaacg accaaaaggt acgaagcata aaccaggtca      1080
     tgaagaactc tttcgcgagg ttgaaggagt tgcaggagct gctgagggac cagaccctca      1140
     ctgccccgag tcaggaagga agggccaggt gcggctgcag cggggaagca ccgggctgca      1200
     gcagttcacg agtcgaggaa gctactcaga cctcaccgga gcgagcctcg tacagccaag      1260
     ttgctaggac gaaacgccca cgagagatgc caccacctaa tagggcaaac caaaatggca      1320
     aaaaggacgc caagctaagc cagcaaactg gtcacccgac ggcaagatgg caaacttaac      1380
     gatgtcagcc aaaacgttaa aaagatacgg cgcacggcaa aaggcgatct cctgctggaa      1440
     ctggcagcga aggatgcaaa cgctctcaag atgcggcaga cgctttccca ggtgctgggc      1500
     gaggcagcga gcgttcggcg gtcacaggcg agaccaccat tgagatccgc gacctggacg      1560
     accttaccac gaaggacgaa atagtggcag ctatcaaagc ccgaacgagc ggacaggagg      1620
     aggccatcag ggtgaagtcc ctccgcccag gctactctgg aacccaggtc gccttttggg      1680
     agtggagccg agcctggcat cgaagatcct gtccgaaggc aggatggacc atgtgcaggg      1740
     tcagggagcg cacggcccag cgccgctgct tcagatgcct cagtttcggg cacatcgccg      1800
     ctttctgcaa agagcggaca gatagaagcg actggtgctt cgaaacaaag cagagaatga      1860
     ggttcatcca gatcaacctc aaccactgcg aagtagccca tagcctactc gagcaggttt      1920
     taagagagaa gcgggcagat atagccctaa taagtgagcc gtacaagaaa ggcgagacgc      1980
     aaagctacat cctggactcc tccaagacag cggctatctg ggcgccaggc agacaacccg      2040
     aaagcgtaca acccagagaa ggtttcatcc gggccaaagt gggcgcgttc tggctttaca      2100
     gctgctacct ccccccgcgc ctaacactgc agcagttcac ccacacacta gacgagatag      2160
     cccaggacgc aaggcacaga tcccaggtgg tgatcgctgg cgatttcaac gcctgggcgg      2220
     aggaatgggg ctcatcgcgc accaacgcca ggggtcgcac cctccaggag accttcgcga      2280
     ctctcgacgt agccctgctg aacaccggct cccaaaacac gttcagcaag gcggggtatg      2340
     gatcaatcgt ggaccttacc ttctgcagca gcggtctgtt tcggaggaca aggtggtccc      2400
     tcagtgatga ctatactgcg agcgaccaca aatatatagt ctgcgacatc gaggatagag      2460
     cgcaagcttc cacaacagcg aagccaccaa ggttcaatcc ggctacgttg caaccgcaaa      2520
     tattcgcgca ggaactgagg attccagatc cttcgggcga cgctgaacgc gacgtccaca      2580
     acaccatggc tgcggttcta caggcctgcc gagccagcat gaggtgtagc cgtgggcatt      2640
     caaggcacca tgaaccggtg ccctggtggt ccccggagat agcccatgcg cgcagagagt      2700
     gtctccgaac cagaaggctg caccaaagag ccagaggaag gccggacttc gagcaaaaaa      2760
     gagaggactt cgcggcaaag aggaagatcc tgaagaagct gataagggag gcaaagacga      2820
     ggtgcttcct cgagatgtgc gatgctgcag agcaagatcc gtggggatcg gcctaccgga      2880
     ccgtagtcaa gaaagcgaag caggcaaagc cgatcgctcc aaaagaagcc gccacaatga      2940
     gagccattgt ggagcacctt ttcccgacgc agcctaggga gtggagccct gtgccgagtg      3000
     gagcaagaga acctgccggc tctacgccgg ctcaggaaat aggcgcccat gaaatcgtgg      3060
     aagtcgctaa ggctatccag gtcggaaaag ctcccggtcc agatgggatc ccagacagcg      3120
     cgattaaact ggcgatgact gcgtgcccgg accggttcgc cagggtcttc aacgcatgcc      3180
     tacgtgaagg cgtattccct agaaggtgga aagtacaaag cctggtcctg ctcccaaagc      3240
     caggcaagcc gccggaggat ccgtcgtcct taaggccgat ttgcctcatc gaccatgccg      3300
     gcaaagccct agagcgctgc atatgccgga ggctccagga ggctgtaatc cgcgcgggag      3360
     atctctcccc attacaatac gggttcaggg aacaccgctc cacggtcgac gcaatttccc      3420
     tggtcaggag gatcgcagcc aaggcaatcg aggggaccag atgggcgggc ggaagcaagg      3480
     agtactgcct gatcgccact ctggacatca aaaatgcctt caatacagcc aggtgggatg      3540
     tcatagtgga ggcgctgcga aatctccgcg tgccgactgg catagtggag gtcataaggt      3600
     cgtacctcag cgaccgtact attaggtacg agacgacctc aggcatccga gagcacgcgg      3660
     ccacctgcgg cgtccctcaa ggctcagtct taggcccagc cctttggaac gtgatgtacg      3720
     acggggtcct cagactngag ctcccggaac ggacacacct tgtcggattc gcggatgaca      3780
     tcgcggtagt ggtcgtcgcc aagacgatcc aggaagctga ggagcactgc aatgctgcaa      3840
     tcgcgaaggt catcggctgg ctcgaacagg cagggctaag cctagcccac cacaagacgg      3900
     aggctgtcct gatttcaagc aggaagcggg tggagacggc cacaatcaac gtaggcggac      3960
     atgtggtcac atcaaccagg gccatcaggt acctgggagt aacgctggac acgaggctta      4020
     gcttcaggga gcacttcgca gaagcaaatc gcaaggcagc gaatgtcgcc agagcactag      4080
     ggaggatcat gctcaactgt aggggcccga agcaaggacg tagactactg ctccagaccg      4140
     tctgcagcgc aacaatgctc tacgcagccc cagtgtgggc ggaggcagcc aaaacaaggt      4200
     cgtacaccaa aggattgacc agcacataca gactgtgcgc cttaagggtg tgctcgggct      4260
     tccgcacgat ctcggatgac gcagctctcg tcatcgcagg catggtgcca atcgacctgc      4320
     tcgcggcgga gcgacaagag ctacaccagg ccctagcagc gctgagcggg caagctccgg      4380
     cagcgacacg ccgtcggcta aaagagagct cgagagctac gagcatacag aagtggcaac      4440
     aacgatggga cgagtcgacc aagggacgct ggacccacca actagtcccc gaccttaaga      4500
     aatggctcca aagaagtcac ggggaagtga acttctggct cacgcaggtt atcagcggcc      4560
     acggatgctt caggagctac ctttacaaat ttggacacga tgacgaccca aggtgccctg      4620
     aatgcggggt ggacgagacg gcggagcatg tggtcctgga ctgcccacgc ttttcagtcc      4680
     ccaggcggag actcctaggg gaagtagcga cggcggacct catcggaagg aggttgctgg      4740
     aggacgccca gttctgggca ggcatgagca gcttcgccgc cttaacgatg aaggagctga      4800
     gacggctaga gagactccga gcggaggcta ggctagccta ggcaaacagt agtggggcgc      4860
     ataagcacgc caatcctggc cctgcgaagc aaagcctagc ggcattaccg cagggttaca      4920
     ggaacttagg agacacctca ttgttagagc ttagttttaa gttatttttt gttaataaac      4980
     aataaaaaaa aa                                                          4992
//
ID   R1-4_DEl    repbase;    DNA;    INV; 5683 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5683
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4605-4605 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           966..1943
FT                 /product="R1-4_DEl_1p"
FT                 /translation="MARRGMLLMSHEQASWMSEALSRYDELVVALMLRCGA
FT                 LESRLAMPPPAAPTVATYAATAALGTHLVAPRAVPVAPVAAPRPAKIRETW
FT                 SAVVACDDPALSGRQIADKVRKEVAPALGVRVHEVRELKRGGAIIRTPSQV
FT                 ELTKVVASTKFAEVGLKVAKNPAEKARVTVFDVDTSVGPEEFMMELKEKNF
FT                 EDLPLKDFQKAVHLATKPWSAADGATVNVALEVNDEALAVLDVGRVYIKWF
FT                 SYRCRSLVRTYACHRCVGFDHKVQNCRFKENVCRQCGESGHTAAKCTKPVD
FT                 CRNCRHKGLPSGHYMLSGACPIYGAVLARVQARH"
FT   CDS           1924..5019
FT                 /product="R1-4_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RGCRLDTNMFSLIQANCGRSREAVPDLSVRMRESGHL
FT                 FALIQEPYVDYRGEIVGFPADMRVFKDTNSKAAIAVDDPDAICMPIAQLTT
FT                 TLGVCVRVTGRYGTIFLCSVYCRFGADINPYIGYLDAVLLLASRNPTILGL
FT                 DANAVSPMWFSKIPDNTGTSENRRRGQLLAEWVLGNRAGVLNVASQEYTFD
FT                 NYTEPRRQSDIDVTFVNDAACTWATYDWRVIPWESSDHNIINVEITPDPSS
FT                 AIENLVLVPQWKLSRANWRRFGIGIRSAIEGIQDLESPLDDRISALRTIVQ
FT                 EVCDGVLGRRRPRARGKVIWWTPELNTKRQEVRRLRRRLQEARRGGTGDAG
FT                 QLAAELRLASGQYKKLILAVKEKNWRDFVGQNRDDPWGHVYRICRGRKKTT
FT                 EIGCLRSGGELVVTWHDSASVLLRNFFPVAEMTAPIAIPDVAPPALEAFEV
FT                 DACVARLKSRRSPGMDGITGGIVKEVWRAIPQHLTELYSRCLSEGHFPTEW
FT                 KHPRVIPLVKAPDKDRSDPASYRGICLLPVFGKVLEGIMVNRVKDLLPDRC
FT                 RWQFGFTPGRCVEDAWRHVTSSVAASTAKHVLGIFVDFKGAFDHVEWSAVL
FT                 DRLVGVGCREIRLWNSFFSGRRASIVSRYEVATVPVTRGCPQGSISGPFIW
FT                 NLLMDVLLQRLETHCGLSAYADDLLLLVEGRSRDDIERKGNGDDGNRRSLG
FT                 SRSWSECVDQQDGNHVAQRQIRPEETPYGTAGWSQPAVRTGIPVPWYHNWR
FT                 AVEFPTSHRGFARPTGGCHGSTGTCTAGGLGTQPPREACYLRRSNDTLRAI
FT                 WCLGLVQQGESRQRPRPSFIVPKVNPFRMPTGLPHSVHSGTAGACWCSSNG
FT                 FGCTPSAIKFKLRKGVSLSDSDWLSGQDLSELDWNSKKALLDERLLNEWQL
FT                 RWDGAIHGRVTHKFFPEAAFVYNRKDFGFTLRAGFLLTGHGSLNAFLMGRS
FT                 LSNTPACSCGGELEDWLHILCVCPLYADLRHLEALGVVQEQGSWNVTGIVE
FT                 TPERMRLLGTFAQAVFERRRMDPSRE"
XX
SQ   Sequence 5683 BP; 1269 A; 1403 C; 1761 G; 1238 T; 12 other;
     cagtcggtct tggaaagttt cggtgagcgg acgtgttttt cgtgcgctcc kgtgtgwttt        60
     ttgatatcgg ctwaagtacg cggaatttaa ttccaaaaas tgaattcagt cctcaagggs       120
     tttcaaaagk aagaatacgg tgcgtttttc gcgtttgtgc gttctgtatt tkcgcggaaa       180
     atcgcgkttt tckgctggaa attttccatt gcgccacgtg cgtttgtgga aaaagtgagc       240
     gcgtcgctct ctgagagaga gcagtgctgt gccaaatcag ctgttaaaca gctgtttagc       300
     gggtgtgtgt cccggctaac tgctggagtt gccacctcgt tgacgggagt gtgtaaccga       360
     ctttggtgag tagtttatac aaaaaccgaa akcgtwaaat agctccgcca gatggcgtcg       420
     gctatcccga aaggggtcgc cagcatgagc gcttcagaaa gcgagatgtc ggcgtctagc       480
     cgatcaagca gcgcaacgag ggatgcaggc agaggtcgcc gtaaaggcaa gcgcggcaag       540
     ggtacgccgc gtgatgcctc gcaggctaaa gttgctgctg tgcatggagc aactggctgc       600
     ccggagccga tgcttgagga gacgctctcc tcattggagg ggcaaggagc cctgatgccg       660
     ctkgcagcca tggaggctgc tgagattgct gccgcgaagc ctggcggccc gcgcggccca       720
     cgaagcctgc cgcgtcaacc gccgcgaaga ctgctgagga tgttgcagct gggattgccg       780
     cgaggagcgc cgccattctg gctgaggcca gcttggcgtc tgctgccttg tcacgagcta       840
     gggaagcccg cgtcgtttcg gtaacgacgg ccgcccatgc gaccgaagtg ccgaaatcga       900
     gcgccacgag tgtagtcgcc gccggacacg ctgccgtgct acatgagctt tccacagctc       960
     agaagatggc taggcgtggc atgctcttga tgagccacga gcaagctagc tggatgtctg      1020
     aggccttaag tcgctacgac gaactagtcg tggcacttat gttgcgctgc ggagcactgg      1080
     agtcccgcct ggctatgccg ccaccggctg cccccacggt tgccacatat gcagccaccg      1140
     ctgctttggg cacgcacctt gttgcccctc gtgcggtccc agtcgccccc gttgctgccc      1200
     cacgaccagc gaaaattcgc gaaacgtggt cggcagtagt ggcctgcgac gacccggcgc      1260
     tgtcaggtag acagattgcg gataaagtcc gtaaggaagt tgctccagcc cttggagtaa      1320
     gggtgcacga ggtgcgcgag ctgaagcgag gaggtgcgat aattcgcacg ccatcgcagg      1380
     tggagctaac caaagtggtt gcctccacta agttcgccga ggtgggcctt aaagtggcca      1440
     agaaccccgc ggagaaggcg agggtgacgg tgttcgacgt ggacacgtcc gtaggacctg      1500
     aggagttcat gatggagctg aaggagaaga acttcgagga cctgcccttg aaggactttc      1560
     aaaaggcggt gcacctggcg acaaagccct ggtctgcagc tgacggtgcc acagtcaacg      1620
     tggcactgga agtgaacgac gaggcgctgg ctgtacttga tgtaggcagg gtctacatca      1680
     agtggttctc ataccgttgc cgatcgctgg tccgcaccta tgcttgccat aggtgtgttg      1740
     gatttgacca caaggtgcag aactgccggt tcaaggagaa cgtctgccgt cagtgcggag      1800
     agagcggcca caccgcagcg aagtgcacca aaccggtgga ctgccggaac tgccgccata      1860
     aagggctgcc ctcggggcat tacatgctct cgggtgcatg cccgatatac ggcgcggtgc      1920
     tagcgagggt gcaggctaga cactaatatg tttagcctca tccaagcgaa ttgtggtcga      1980
     agccgtgagg cggtccccga tctttcagtt cggatgagag aatcggggca tctctttgcg      2040
     ctgatccagg agccctacgt ggactacaga ggagaaatcg tcggatttcc tgccgacatg      2100
     cgtgtcttta aggacaccaa cagcaaggct gccatcgctg ttgacgaccc agatgccatc      2160
     tgcatgccga ttgcacaact gacgacgacg ctcggagtat gcgtgagagt cacgggaaga      2220
     tatggcacaa tcttcttgtg ctccgtatac tgccgttttg gagcggacat caatccctac      2280
     atcggatacc tggatgcggt tctgctgctg gccagcagaa acccaactat cctcggcctg      2340
     gatgcgaacg cagtatctcc tatgtggttc agcaaaatcc cagataacac tgggactagc      2400
     gagaatcgca gaaggggtca gctgctagca gagtgggtac ttggaaaccg agccggagtg      2460
     ctcaacgttg ccagccagga gtacacgttt gataattaca ctgagcccag gcgccagagt      2520
     gatatcgacg tgaccttcgt caatgatgca gcctgtacat gggctacgta cgactggaga      2580
     gtgatcccgt gggaatcgag tgatcacaac attatcaatg ttgagattac acccgaccca      2640
     agcagtgcaa ttgagaactt agttcttgta ccgcagtgga aactctccag ggcgaattgg      2700
     cgaagattcg gaataggaat caggagtgca atcgagggaa tacaggactt ggaatcgccg      2760
     ttggacgacc ggatttctgc cctacgcact attgtacagg aagtgtgcga tggagtgtta      2820
     ggacgcagga gaccgcgagc taggggaaag gtaatatggt ggacacctga actgaatacc      2880
     aaacgccaag aggtcaggag actgaggcgc aggctacagg aagcgcgccg gggtggcacc      2940
     ggtgacgctg ggcaacttgc tgctgaactg aggcttgcct caggacagta caagaagctc      3000
     atcctggcgg tcaaggagaa aaactggcga gacttcgtgg gacagaacag agatgaccca      3060
     tgggggcacg tctaccgtat ctgccgaggt cgcaagaaga caaccgaaat tgggtgcctt      3120
     cgttcgggtg gtgagcttgt cgtaacatgg cacgacagcg caagtgtgct tcttcgtaac      3180
     tttttcccag ttgcggagat gacagcacca atcgccatcc cggacgttgc cccaccggcc      3240
     ctcgaagcat tcgaggttga tgcatgcgtc gccaggctga agagcagacg ctctcccggc      3300
     atggacggca tcacgggcgg gattgtcaaa gaggtatggc gtgccatccc tcagcaccta      3360
     acggagctgt actctcgctg cctttcggaa ggacactttc ctaccgagtg gaagcatccg      3420
     agagtgatac ctctggtgaa ggcgcctgat aaggacagga gtgatcctgc ctcttatcga      3480
     ggcatttgcc ttttgccagt gtttggaaag gtgctcgagg gaatcatggt gaatcgggta      3540
     aaggacttat taccggatag atgcagatgg caatttgggt ttacccctgg acgctgcgtg      3600
     gaggacgcct ggaggcacgt aacgagttca gttgctgcca gtacggcgaa acatgttctc      3660
     ggaatcttcg tggactttaa aggtgccttt gaccatgttg aatggagcgc agtgctcgat      3720
     cgactcgtcg gcgttggctg tcgagaaatc cgcttgtgga acagcttttt ctccggtcga      3780
     cgcgcaagca tcgttagcag atatgaagta gccacagtcc ctgtcacacg gggctgcccg      3840
     caagggtcta ttagtggtcc attcatatgg aacctactga tggatgtgct gcttcagcgc      3900
     ttggagacac attgtggctt aagtgcatat gcggacgact tacttctcct tgttgaaggg      3960
     aggagtcgtg atgacatcga gcggaaaggg aacggagatg atggaaatcg tcggagcctg      4020
     gggagccgaa gttggagtga gtgtgtcgac cagcaagacg gcaatcatgt tgctcaaagg      4080
     caaattagac ccgaggagac cccctacggt acggctggct ggagccagcc tgccgtacgt      4140
     acaggaatac cggtaccttg gtatcacaat tggcgagcgg ttgagtttcc tacctcacat      4200
     agaggttttg cgagaccgac tggcgggtgt cacggcagca ctggcacgtg tactgcgggt      4260
     ggactgggga ctcagccccc gcgcgaagcg tgttatctac gccggtctaa tgacaccttg      4320
     cgtgctattt ggtgcctcgg tttggtacaa caaggtgagt cgaggcagag gccgagaccg      4380
     tcttttatcg tgccaaaggt taatcctttt aggatgccta ccggtttgcc gcacagtgtc      4440
     cacagtggca ctgcaggtgc ttgctggtgc tcctccaatg gatttggatg cacaccgagt      4500
     gcaattaaat tcaagctcag gaagggagtg tccctgagtg acagcgactg gctttccgga      4560
     caggaccttt cggaactgga ctggaacagc aaaaaggcgt tgttagacga acgtctgcta      4620
     aatgagtggc agctcagatg ggatggtgcg atacacggtc gtgtgacgca caaattcttc      4680
     ccagaggcag cgttcgttta caataggaaa gactttggtt ttaccctaag agccggattt      4740
     ttgctgacag gacatgggtc gctgaacgca tttctgatgg ggagaagtct cagcaacaca      4800
     ccagcatgct catgcggtgg ggagctggaa gactggctgc acattttatg tgtttgcccc      4860
     ctttacgcgg acttgcgcca cttggaggcc ctaggcgtcg tacaggaaca aggcagctgg      4920
     aacgtgacgg gaatagttga gacccctgaa aggatgcgtc tcctaggaac gttcgcacag      4980
     gcagtcttcg agaggcggag gatggatcca tcgagggagt aaccccgggg acactggaca      5040
     ggacatggcg aattcgcgga tgacgcgact gcggaggagg ggcttttagc ctgcggtgcc      5100
     gtgtggctag cggcgaagaa tactgccaca gcttgtcatt gcttgtcgta ggaggcgact      5160
     aatatggcac tggggcaccc tatccgggct tgtcggagcc aaagggggag ggcctaccga      5220
     gcccttaatt tcggtaccac gggttgggca gttttccaag gctgcccatt gaggtcggcc      5280
     cccttgtggg agtatcgtgg tggctgtggt tgacacccat atcgcgggta gaactctcgg      5340
     gttcgacgtg gagttgcgtt atacaactcg ggtgctgtga cccatagagc agtagagatt      5400
     ttagatagat ctcgcccctc agcaaggggg agtgtttgcc cggcaagtaa gcactcgaat      5460
     tgacaccggg gtggttgcta tgtacatagc tatagcttct agtccggggc gttggtctgg      5520
     cgcttaatct agacacatgc actatatact cacttgcggg tgtgttatgt actcacttgt      5580
     gggtgcatga tatatcaact tgtgggtata ttagagtgcc gtggttgtaa tcccttcagt      5640
     gtggaacacg ccacgtaaaa taagtgtcgg agagatctga ttt                        5683
//
ID   R1-4_DF     repbase;    DNA;    INV; 3438 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3438
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 988-988 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..351
FT                 /product="R1-4_DF_1p"
FT                 /translation="YSGTQIASLSLQKSVADQLLERKNLRIGWSICRVRAK
FT                 IEPRRCFKCLNFGHIAARCRSKHDASKQCFNCGASSHASKECKGKPACILC
FT                 SRTAEPNKAHNTLSRMCPQYQKALKMLQN"
FT   CDS           338..3286
FT                 /product="R1-4_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KCSKIRFYQLNVNHCRAAQDLLTQTVREEKTDIAILS
FT                 DPYSPKQEGVWHQSSEGGAAIWSCSQPPAQLTHRKASHYFARARYRNSYIY
FT                 SCYIPPRIPLPDFQIIIEEIAQDANEKSSVIIAGDFNAWATEWGSRSTNPR
FT                 GRILVDTLAHLDVCLLNSGNASTXCSAGRESIIDXTFASPXLSRISRWAVS
FT                 GRYTHSDHNAIIAEFHSTAAQNRRVPMRQVGYKDSTFNRNVFLSSLQEISM
FT                 AGDSNTCAANMADAIKSACDASMGKAYTGGNRRCPVPWWNEEISRARNECH
FT                 SAKRRLQRSRGRPHFDQNLNILRGKRRLLSYLIKRSKSACFQXLCEAANAE
FT                 PFGGAYKLVMGKLNRQPMPTCPTQLEHIVATLFPRQPPLIPLMGPTPEVED
FT                 AALTNTSEVLEIAARLKAKKAPGPDGIXNTALKTIIAARPDTFVELFNKCI
FT                 GEXTIPRRWKTQRLVLIPKPGKQHEDPSAYRPLCMLDXTGKILERLICNRI
FT                 EDELESRQGLSNHQYGFRKHRSTTDAIGELVRIASNAIEGERNKKEYCLVC
FT                 TLDVKNAFNXANWSKIIEALIQKEISPYLIKLIESYFEERTLLYDTDTGEK
FT                 QQQITGGVPQGSVLGPLLWNIMYDGVLQLVLPAGCTLIGFADDIALATVGK
FT                 KLEEVNVRCSAAVDQIINWVTTNGLCLAEQKSEAVVISSKKKVENTSIRIG
FT                 STTIDSQPAIKYLGIMIDHRLKFSQHLHYISRKAATVTTAISRIMANTRGP
FT                 KQQSRQLLAGVVTSTILYGSVVWASALNTPSYSRECKGVYRRCALRVACCF
FT                 RTVSETAALLVAGMIPLDLLAAERSRGTIVNXDQRDATIVHWQARWESAPN
FT                 AHWTRRLVKNVRPWLKRRHGQVNFYLSQFLTGHGCFKAYLFKYKHADDPXC
FT                 DXCGAGVIEDVEHCFFECPIFQRERDSLLNGNGSLLTADSVVDYMLSNEDQ
FT                 WNAVAHMAATIMKELRRRERSRSSRTTR"
XX
SQ   Sequence 3438 BP; 990 A; 877 C; 840 G; 708 T; 23 other;
     tacagcggta cccaaatcgc ttcgttgtcc ctccaaaaaa gtgtagcaga ccagctcctt        60
     gagcgaaaga acctgcgcat tgggtggtcc atctgccgag tacgtgcgaa aatcgagccc       120
     agaagatgtt ttaagtgctt aaattttggc catatcgcgg caagatgcag aagtaagcat       180
     gatgcgagca aacagtgctt taactgtggc gccagctccc atgcttctaa agaatgcaag       240
     ggaaaacctg cctgcatcct atgtagcagg actgccgagc caaataaggc acataacacc       300
     ctgagtagga tgtgcccaca atatcagaag gcgctgaaaa tgctccaaaa ttaggtttta       360
     ccaactcaac gtaaaccact gtcgagcggc ccaggacctc ttaacccaaa cggtccggga       420
     agaaaaaact gacattgcca tcctaagcga cccatactca ccaaagcagg aaggtgtctg       480
     gcaccaaagt agcgaaggcg gagcagccat ctggagctgt agccaaccgc cagcacagct       540
     cacccatagg aaagcatccc attacttcgc aagagcccgg tataggaact cctatatata       600
     tagttgctac atacccccaa gaatcccgtt gccagacttc caaataataa tcgaagaaat       660
     agctcaagat gcaaatgaga aatcttccgt catcatcgct ggagatttta acgcatgggc       720
     cacagagtgg ggaagcagat cgaccaatcc aagaggtcgg attctcgtag acaccctggc       780
     acacctggat gtctgcctac tgaactctgg aaatgcgagc acctwctgca gcgcaggacg       840
     cgaatccatc atagacmtaa cctttgcgag tcctgmgctt tcgcggatat ctcgatgggc       900
     ggtmtctggw agatacacac acagcgacca taatgccatc atagctgagt tccactccac       960
     ggctgcccaa aacagamgag tgcccatgcg ccaggtgggg tacaaagaca gcacgttcaa      1020
     tagaaatgtg ttcctcagca gcttgcagga aattagtatg gcaggtgact caaacacttg      1080
     tgcagccaac atggcagacg ccataaagtc agcctgtgat gcatcaatgg ggaaagcata      1140
     tactggaggt aacaggcgct gccccgtccc ttggtggaat gaggaaatat cgcgtgctcg      1200
     aaatgaatgc cactcagcaa agagacgact gcagagatca agaggaagac cccatttcga      1260
     ccaaaaccta aatatcctca gaggaaaacg aaggctgctc agctacctga tcaagcgaag      1320
     caaatcggca tgcttccagg akctctgcga ggctgcaaat gcggaaccct ttggtggtgc      1380
     atacaaattg gttatgggca aacttaatag acagccaatg ccaacatgcc caacgcagct      1440
     ggagcacatc gttgccacac tgttcccacg gcagccacca cttatacctc tcatgggccc      1500
     gaccccagag gtagaagacg cggcgcttac taacacaagc gaagtgcttg aaatagcggc      1560
     gaggctcaag gcgaagaagg cacctgggcc tgacggcata cmaaacacgg ccctwaagac      1620
     mataattgcc gcacgtccwg atacattcgt tgagctattc aacaaatgca ttggtgaakg      1680
     cacaattccg cgaagatgga agacmcagcg kctggtactc attcccaagc cggggaaaca      1740
     gcacgaggac ccgtcagcmt atcgtccctt gtgtatgctg gacwcgactg gcaagatcct      1800
     ggagaggctg atctgcaacc gcatagagga cgagcttgaa agccggcaag gactctcaaa      1860
     tcatcaatac ggcttccgta agcatcggag tacaaccgat gccattgggg agcttgtgag      1920
     aattgctagc aacgccatcg aaggtgaacg gaacaaaaag gagtactgtc tagtatgcac      1980
     gttggatgta aaaaatgcct tcaatwcagc gaactggagc aaaatcattg aggccctgat      2040
     acaaaaagaa atctcgccgt atctgataaa gcttatcgaa agctactttg aagagcgcac      2100
     actgttgtac gacacggaca cgggtgagaa acaacagcag ataaccggtg gagtccccca      2160
     aggttctgta cttggccccc tcctctggaa tattatgtac gatggagtcc tgcagctcgt      2220
     actgccagcc gggtgcaccc tcattgggtt cgccgacgat atcgccctgg caacagttgg      2280
     aaaaaaacta gaggaggtaa atgttagatg cagtgctgcg gtcgaccaaa tcattaactg      2340
     ggtaacaacg aatggactct gccttgctga acaaaaatca gaagcagtag tgataagcag      2400
     caaaaagaag gtagagaaca catccatccg aattgggtct accactatcg attctcaacc      2460
     ggcaatcaag tacctgggga taatgattga ccacaggctc aagttcagcc aacacctgca      2520
     ctacattagc cgtaaggcgg ctacagtaac caccgccata agcaggatca tggcaaacac      2580
     cagaggcccc aagcagcaaa gccgccaact cctagctgga gtagtcacct ccaccatatt      2640
     atatggctcg gtggtctggg cttcggcgtt gaacacccct tcttacagcc gggagtgcaa      2700
     aggagtgtac aggagatgtg cccttagggt tgcctgctgt ttccgaactg tatccgagac      2760
     agcagccctc ctggttgctg ggatgattcc cttagatctg ttggcagctg aaaggagtcg      2820
     cggcacmata gtcaaccakg accaaagaga tgctacaatt gtgcattggc aagcacgatg      2880
     ggagtccgca ccaaacgcwc attggactag gcgactggta aagaacgttc ggccctggct      2940
     caagcgtcgc catgggcagg tgaacttcta tctgtcacaa ttcttgacag gccatggatg      3000
     ctttaaagcc tacctgttca aatacaagca cgctgatgat cccwtctgtg acmactgtgg      3060
     agccggtgtt attgaagacg tcgagcattg cttttttgag tgcccaatct tccaacgcga      3120
     acgggacagc ttgctgaatg gaaacggaag tctattaacg gctgatagcg ttgtggacta      3180
     tatgctgtca aatgaggatc aatggaatgc agtagcgcac atggcagcga ccattatgaa      3240
     ggaattgcga cggcgagaaa gatctcgctc ttctcgcact acccgatgag ctcccctagc      3300
     cttatccgcc ccgtgaagta gaactgcaaa gcccaatccc gcgggagcgg attctttttc      3360
     tcctttactt agtttacttt attctagtat gtawatatat tatattctct cttctcttgc      3420
     taacaaaaaa aaaaaaaa                                                    3438
//
ID   R1-4_DK     repbase;    DNA;    INV; 3915 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3915
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1360-1360 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..849
FT                 /product="R1-4_DK_1p"
FT                 /translation="MPRKQRADAILIKCSEGSYADMLKLVKTEPSLQGLKD
FT                 NVQGLRRTANGGLLLRMQKPQDPSTQQLQAALRTAISDKAEVAVMQETVQV
FT                 EIRDLDEMTSGEEVTMALFAGEDCDIPSNAAPRMRKAFGGTQTATVSLRPD
FT                 HARRLLDKGKIRIGWVVCRIRQKTELRRCFKCMGYGHTSTRCRASDSVAKA
FT                 TQNSCFRCGEEGHKHYTCQAKPRCILCTRGGKPAGEAAHATLSRICPEYLK
FT                 ATHNTQNG"
FT   CDS           845..3772
FT                 /product="R1-4_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVKFLQLNLNHCRAAQDLLSQTVFEEKIDIAVLSEPY
FT                 KSKAEGVWQQSADGGAAIWSCGQSPGHLSQRASRPGYARAKVQATTIYSCY
FT                 LAPSLHIDAFRDILQEIARDARGRSPVLIAGDFNAWSTAWGSSKTTQRGTI
FT                 LLDALATLDVCLLNDGARCTYSKAGRESIIDLTFASPELCRTSHWKVTDLL
FT                 TYSDHAAIITQTTHSQQGPSLRQSAYKVHTLNADTLLSSMDGNVITGDANT
FT                 CAGILSARIKAACDAAMASSTRGNGRRPVPWWNHEISVARSECLSARRRCQ
FT                 RSRGRPTQALFETRYKEKKKALKIAIKTSKSRCFQELCDAADQEPFGSAYK
FT                 LVMGKLYRPPTPTSQEQLGAIISTLFPSQPPLVLPNIAASEAIFTNEEEIL
FT                 CALASSKAAKAPGPDGIPNAALHAIMKSYPSLFAQVYNRCIAERTFPRVWK
FT                 QQRLVLIPKPGKMNDDPSSYRPLCMLNTLGKIFERIICNKLEREIEERGAL
FT                 SNQQHGFRKKRSTIDAIREVTLMAANAIEGERWQGGTKQYCLVXTLDVKNA
FT                 FNSANWSLVLQALQHGGISGNLTLLIADYFKDRVLLYTSDDGNQTHHVTGG
FT                 VPQGSVLGPILWNVMYDGILRLPLPDGCAVVGFADDIALVTVEKHLSDVSA
FT                 KCSLAIDMMMSWLKDNGLSLAEHKTEAVLISSRKTVEKVTFRVGSTYVESS
FT                 PAIKYLGVMIDHRLNFKSHLEYAAAKASKATAAISRMMANTRGPKQHSRRL
FT                 IATVVTSTILYAAPIWAEAMRTVSYSRQCKSVYRRCALRISSCFCTVSEEA
FT                 ALVVSGAIPIDLLAEERRTGNSGSRIQRSSTMARWQDRWNNASTGRWTYRL
FT                 IPDLVPWLQRRHGQLDYYTTQIITGHGCFKAYLHRFKHEVDPYCDYCGSAF
FT                 TEDAEHAFFVCPLFSAERAALEAAMNCRLTPDNLVGCMLETPSKWNAAAEM
FT                 AATVMRELRRREQTRRTEGDR"
XX
SQ   Sequence 3915 BP; 1047 A; 1096 C; 1070 G; 700 T; 2 other;
     aattcggcat ggcaacaggt cagggccaaa cctaaaccca kgaatcccca accgagaccg        60
     gagagcagcg aacccaaagg gattcgagca ccaaacgctg tcatgcccag gaagcagcgc       120
     gccgacgcta ttttaataaa atgcagcgaa ggctcgtacg cagatatgct gaagctggtc       180
     aaaactgagc cctccctcca gggactcaaa gataatgttc aaggcttgcg aagaactgca       240
     aatggcggac tcctcctgag aatgcagaag cctcaggacc cgtccacaca gcagctgcag       300
     gcagcactca ggacggccat atccgataaa gcagaggtgg cggtcatgca ggaaactgtg       360
     caagtggaga ttcgcgacct ggacgagatg accagcggcg aagaagtcac catggctctg       420
     tttgccggag aggattgcga catcccaagc aacgctgcac ccaggatgcg gaaggcgttt       480
     ggcggcacgc aaacagcaac cgtcagcctc aggcctgatc atgcgcggag actgctcgat       540
     aagggcaaaa tccgaatcgg atgggtcgtc tgtcgcatca gacagaagac cgagctaagg       600
     aggtgcttca aatgcatggg ctatgggcat acctcgacga gatgcagggc ctcagactca       660
     gtagccaagg ccacacaaaa ctcctgcttc agatgcgggg aagaaggcca caagcactac       720
     acgtgccaag ccaagcccag gtgtatccta tgcaccagag gaggcaaacc cgcgggtgaa       780
     gctgcgcacg ctactctgag caggatctgc cctgagtacc tgaaggccac ccataacacg       840
     cagaatggtt aagtttttac agcttaactt aaaccactgc agagctgccc aagatctgct       900
     gtcacagacg gttttcgagg agaaaattga cattgctgta ctgagcgaac cgtacaagtc       960
     aaaggcagag ggagtatggc aacagagtgc ggatggtggt gcagccatat ggagctgcgg      1020
     gcagtccccc ggacacctgt cgcagagggc gtcgagacct ggctatgcaa gggctaaggt      1080
     ccaagcaacc accatctaca gctgctacct agccccgagc ttgcatatag atgcctttag      1140
     agacatcttg caggagatcg cccgagatgc ccgcggaaga tccccagtac taatcgctgg      1200
     ggacttcaat gcgtggtcca ccgcctgggg gagctcgaaa acgactcagc ggggaaccat      1260
     ccttctggac gccctggcca cattagacgt ttgtctcctg aacgatggag ctagatgcac      1320
     ctatagcaag gcaggcagag agtcaatcat tgacctgact ttcgccagcc cggagctctg      1380
     ccggaccagc cactggaagg tcacggattt gctcacatac agcgaccacg cagccattat      1440
     cacccagacg acgcacagcc agcagggccc gtctctccgg caatctgcgt acaaggtaca      1500
     cacccttaac gcagacacac tcctaagcag tatggatggc aacgtcatca ctggcgacgc      1560
     caacacctgc gccggcatat tatctgcgag aatcaaggct gcttgtgatg ccgccatggc      1620
     gagctccact agaggaaatg gaaggagacc agtcccctgg tggaatcatg agatatccgt      1680
     cgccaggagc gagtgcctct ctgcaaggcg aagatgtcaa cgaagtagag ggcgtcccac      1740
     gcaagcgctg ttcgagacac gctacaagga gaagaaaaaa gccctcaaaa tcgctattaa      1800
     gacgagtaag agcaggtgct tccaagagct gtgcgatgca gcagaccagg aacccttcgg      1860
     ctcggcctac aagctggtca tgggcaagct ctacagaccg ccgactccaa cctcccagga      1920
     acaacttgga gctataatct ccacgctgtt cccgtcgcag ccgcccctcg tgctgccaaa      1980
     catagctgcg agtgaagcga tcttcaccaa cgaggaggaa atactgtgcg cgttggccag      2040
     cagcaaggca gccaaagccc cgggacccga tggcattccc aacgctgcac ttcatgccat      2100
     aatgaagtca tacccaagcc tatttgcaca ggtatacaac aggtgcattg cggagcgcac      2160
     ttttccaaga gtatggaagc agcagagact agtgctcatc cctaaaccag gcaaaatgaa      2220
     tgacgacccg tcctcatatc gccccctgtg catgctcaac acactgggga agatatttga      2280
     gcgcataatc tgcaacaagt tggagagaga gatcgaagag cgtggagccc tatcgaatca      2340
     gcagcacggt ttcaggaaga agcggagcac gatcgacgcg atacgagagg taacgctaat      2400
     ggcagcaaac gcgattgaag gcgaaagatg gcagggaggc accaagcaat actgcctggt      2460
     cwgcacccta gatgtcaaaa acgcttttaa ctcagcaaat tggagcttag tcctgcaggc      2520
     actccaacac ggcggcatat cagggaacct caccctcctg atagcggact acttcaaaga      2580
     tcgcgtcctt ctgtacacat ccgacgacgg caaccagacg caccacgtga caggtggtgt      2640
     accccaggga tctgttcttg ggccaatcct gtggaacgtc atgtatgacg ggatcctgag      2700
     acttccacta ccagatggct gcgccgtagt agggttcgct gacgatatag cgctggtcac      2760
     ggtggagaag cacctgtccg atgtctctgc taaatgcagc cttgcaatcg acatgatgat      2820
     gtcttggctg aaagacaacg gtctctcgct cgccgaacac aaaacggaag cagtgctcat      2880
     aagcagtaga aagaccgtag agaaggtcac cttccgggtc ggctcgacat acgtcgagtc      2940
     cagtccggcg atcaagtacc tcggagtcat gatcgaccat aggctgaatt ttaagagcca      3000
     cctggagtac gcagcggcca aggcatctaa ggccactgcc gctatctcta ggatgatggc      3060
     caacacccgt ggcccaaagc agcatagcag acgattaata gctacagtgg tgacctcgac      3120
     catcttgtac gccgcgccga tttgggcgga agccatgagg actgtcagct acagccggca      3180
     gtgtaagtct gtctacagac gctgcgcttt gcgcatctcg agctgcttct gcacggtgtc      3240
     agaagaagct gcattggtgg tgtcgggagc aatcccaata gacctactgg cagaggagcg      3300
     caggactggg aactcgggta gcagaatcca gagaagcagc accatggctc gatggcagga      3360
     tagatggaac aacgcgagca caggacgatg gacctacagg ctcatccccg atctggttcc      3420
     ctggttgcag agacgacatg gtcagctgga ctactacacc acgcagatca tcacaggaca      3480
     tggttgcttc aaggcctacc tccacaggtt taagcatgag gtcgacccgt actgcgacta      3540
     ctgtggcagc gcttttactg aggacgcgga gcatgcattc ttcgtatgcc ccctattctc      3600
     ggcggaacga gccgcgctgg aagcggcaat gaactgccgc ctgacacccg acaacttagt      3660
     cggttgcatg ttggagaccc cctccaaatg gaatgcggct gccgaaatgg cagcaaccgt      3720
     gatgcgagag ctgaggcgcc gggagcagac ccgtcgcacc gaaggcgacc gatgagcggc      3780
     aacaggaccg ccaaccgccc ccgtgaagta tagctttgcg gcagtcccac gggtgcggac      3840
     tttccaccct atccatcctc tgtaacatat gtacttaagc ctatattctt ttcaataaaa      3900
     aaaaaaaaaa aaaaa                                                       3915
//
ID   R1-4_DMo    repbase;    DNA;    INV; 4268 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-4268
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 4268 BP; 1202 A; 1021 C; 1099 G; 946 T; 0 other;
     gacggacatt gcacaaaacc aatatactga ttcactttcg tgaatgagta ttataacaag        60
     taagaaagct ctagtcgaga ctgctcgact acgagatccc ctgaaccctt ggagtaatag       120
     ctatttcaat aatttttcgc gtctttcagc ttacacaaga aacacgcatg cacacacaca       180
     cacacacaca cgcacgcacg cacgcacaca caggcataca tacacacaca tacatacaca       240
     cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacggaga       300
     gttcgagttg cgttttcacg gagtgcggtc gatgtcatcg tggtccatcg tagacaatag       360
     cttgaactgt gttttcccct gtgaaagtgg aaagaactga agtcaacgtg tttgctgtgg       420
     gcgcggcgta cccagcgacc tcaaaaaaac taccagagac ttactgcgcg gcggttcgtg       480
     gaattcccaa gcggtataat tcggtggtgc aagagagggg gggcgatagc gtcagtgttt       540
     tggcgtcagg gcttctttcc tttccttgtc ttttgtgggc gcgtaaattt tgttacttta       600
     ggcgtcacac ttgcgcaata agaaaaatca ggtgcattca ctctaacagc tgttagtagt       660
     gctggaaatt gcatcgggca atcagctgct cactaacgtt ggtgagttgc taagccttag       720
     caaagacagc aacctagctg ctggagtgaa gtagcagtta ttaaaagtag tgcatacttt       780
     cgggctctcg ctgtagtcaa gttgtagttt aagttactgc gggttgtaaa ctcagattat       840
     attagtagcc attgcccact acaggcttca cgccgtggta gtcggagcag aaatggatgc       900
     catgatggag gacgagctgc aagcttttgc gcgtcgttcc tcgttgcagc gatcgccgca       960
     gcaacaacag agggtgttgg cgcagccgtc gacttctaac caggctccag tggctgagtg      1020
     ccaggcaccc aagtcactaa aagaagcgtt agctcaaata ggagctacac tagagggtct      1080
     gtctgcctta tttgggggtc agcggcatat aaatgcctta atgagagagg agctggctag      1140
     gctggtcagc cttcacaaga cggccgaagc gttctgcaac cgttcggtta aaaactgtga      1200
     ggtgcagacc acgccactca aaaaagtagg cgaaaacgtt aaggcagcga gcattagtgc      1260
     tacagtaggt agcaatactc ccaagcggtc gagggaagtt gcctccgaac agaggaaaac      1320
     tccctcaaaa aagccgaggc ccaatagaag tgcagcgaac ccaaaagaac caatggctct      1380
     acgggctaca gctgaatctg aaacttcaaa ccaggccgcc cgacagacaa accagagcag      1440
     ctggacagtc gtcaaagggc gaaagcctat gcaaaaacgt cccaggactg acgcgattgc      1500
     gatttcaggc gtagggggtt gcagctacgc ggacatgctt cgtgtagtta aaaacgaccc      1560
     aaatttgaag catctgagca gcgacgttca aggcattagg aagacagcta agggggacct      1620
     tttactgcaa ctgagtagga agccggagca tagcgctgag gctctgcacg aagctgtagg      1680
     caaggccttg ggagaccgag cggtagttaa aacacttacc gaatcggcgc aagttgagat      1740
     tcgcgatcta gatgagttag cggcgcctgt ttcaggtgtg gagaaatggg tcacagtgcc      1800
     aaagcatgca ccaagccacc aaaatgtagc ctctgcatcc ggaaaggtga aaagcagacg      1860
     gaccattcag caggcagctt caagtgccca tcttaccgtg aagctgctcg taaaatgaaa      1920
     tgttaaggtt tttgcagctt aacttaaatc attgtgttgc tgcccaagat cttctagagc      1980
     agaccattag ggaaaaatgt atagatgtag cttttctcag tgagcctcac cactgtagaa      2040
     ccagctgccc taggacatgg tcaacagacg ttaatggcaa agctgcgttg tgggtatgcg      2100
     gcaactcaac gaacgtactt tcgaatgtta agtcattcaa tgggttcgta cgtggccgat      2160
     atggtagctt gtggctttac agttgctatc tggcccccag catgcagctc agtgaattca      2220
     cgacggtgct cgacgagctt gccgaggatg ctaggggtcg gaaggccatt atagctggag      2280
     attttaactc ctgggcgcta gaatggggta gcccaacaac aaatgccaga ggtcgtatcc      2340
     tactggagat cttcgcgaca ctagatgttg cactgctcaa cactggccat gagtacacct      2400
     tcagtcgggc gggatacggg tctgttatcg acattacttt tgtcacttca tccctctttc      2460
     ggggagcaac atggagccat tgcgatagct atacaggcag cgatcatacg gcacttctgt      2520
     tcacaatagg tgagccacct gccagggcgt caacattgtg gagggagtcg tatcggctag      2580
     atacttttga tcccgcggtc ttttcagagg ccattcagtc tctgggtaca attggtaatg      2640
     ctgaggccag agcatgccaa atggtagccc aaattacaga gtgcctgcaa tagcagcatg      2700
     ttacgccgca agcagttcac gcgacaacat gagcctacgt attggtggaa tacgcaaata      2760
     ggtgacattc gtcgcaaatg catccaggcg agaagaagct accaacgggc tcgcggtagg      2820
     ccaacgtttt cttgagaaac agttagctta ccaggcagct agaagacagc tgaagaaggc      2880
     cattcgggca agcaaaagag aatgtttttt tacagttgtg cgactcagcc gaatatgacc      2940
     cttggggcag ggcatataag atagtagtta aaagactata cgcaggtaga caggtgcagc      3000
     ctacggatcg tctggagctt aaatcgattg tggaaacact ctttccagaa agtttaagct      3060
     ccattcacgc ccctgagtcc gagtctgctg atcagggctc aacgagcact gaaattgctg      3120
     aaattgtttt agttacagag gaagaaatat cagtagttct ccgaggtctt agaaccaaca      3180
     cagctccagg gccggacggg atcccaaatc gtgcgctaaa gctagccctc gccttgcacc      3240
     caagtacgtt cgccgaatta tttaacgaat gcctgatcca agagacgttc ccggcaaaat      3300
     ggaaagccca gaatctggta ttgctaccca aggctggcaa accaccagat gagccatctt      3360
     cgtacagacc gatctgtctc ttagacacca tgggaaaggt gtttgagaaa ctgatctgct      3420
     ctaggctgga gactgcgatt gcaagcgccg gaggcctgtc accaaaccaa tttggattcc      3480
     ggaaggcccg gtcaacaacg gacgcgctta acaaagttgt tggtctggcc acttccgcta      3540
     ttcaaggcac cagatggagg cacgggacga aggaatactg catcatcgcg accctggatg      3600
     taaggaatgc cttcaacaca gctagttggg atatgatact gaatgcgctg tcacaatata      3660
     atatccctaa atatctaaga gagataataa agagctactt cagaggaaga acactggtat      3720
     acaacacgag tgagggtccc caaactcata cagtgtcagc tggagtaccc caaggctcag      3780
     tgctggggcc tctcctatgg aacatcatgt acgacggcgt actgcgcttg gaactaccag      3840
     caggcgcgca caccattggc tttgctgatg atgtagctgt cgtagccata ggaaaggagc      3900
     tcaaagatac agaggatatg tgcagcgaaa gtatcaatcg catacgaagc tggttgacag      3960
     gagctgggct cgagctagcg gcacacaaga ccgaagttgt actagtcagc agtcgcaaaa      4020
     gagtggaaac tgccaatata aagatcggca gcgtcaccat tgcgtcaaag agggcgataa      4080
     gatatcttgg tgtcatgata gacacaagat taactttccg cgagcactta gaatatgtgc      4140
     ataaaaaggc agctgattct tgtagagctc tctcgagaat catgcttaac acgcggggac      4200
     ctaaacagca acgacgtctc ctcctaatga gcgtcattag gtctgtcatc ctctatgctg      4260
     cgccaata                                                               4268
//
ID   R1-4_DPer   repbase;    DNA;    INV; 4226 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4226
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1670-1670 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           801..1358
FT                 /product="R1-4_DPer_1p"
FT                 /translation="MVGKLKVGWTSCRIRERTAQRRCYRCLEFGHLAIRCK
FT                 SAVDRTGCCLRCGVNGHKAATCQSDPRCFICTANNSNETNHYAGSRRCPAA
FT                 RSVPTPIMKVMQLNLNHCAAAQDLLSQXVRELAIDLAILSEPYQTRESPGF
FT                 ILDATKKAAIWLCGATPLQLSLSSAALGLCAPRSEVCGYTASTSPQA"
FT   CDS           1202..4087
FT                 /product="R1-4_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="GVPWVHLGCHQKGRDMAMRGHAIAAFPLKRCAGFVRA
FT                 KVGGVWIYSVYLAPSLTLSEFAGTLDNLAADARGRHPVAIGGDFNAWAEEW
FT                 GSVATNARGRALLEIIAPLDIALLNEGNQHTFSRAGIGSVIDLTFVSSSLF
FT                 NSSGWSISNIYTGSDHRAIIWDTGQQTSSVETAAPRWRCYRAETLNTALFM
FT                 XLMSNLTANGNAECMANHVMEHLEAACTATMAQRKHYGRHHQPVFWWNEDI
FT                 AALRRECNQARRRYQRSRGSTAFPQWQSTFRDCRRALKAAIRDSKRQCFLK
FT                 LCDSAEQDPWGRAYKLVTNKLCAKRQAPPSDPDTTRSIVEELFPHRADHIG
FT                 DVRCLTLQPHSQAHIEEVSLEEVERAARSISPNKAPGPDSIPNRALLLALS
FT                 TRPDIFAKLLNQCLREGVFPVRWKIQKLVLIPKPGKPPGTASSYRPICLID
FT                 TAGKLLEKVVCARLERSIAEAGDLSPHQYGFRKARSTIDAVRKVVDIASGA
FT                 IAGTRWKGGGKEYCLVVTLDIKNAFNTARWSCILRALESFDTPRYLQRMVQ
FT                 SYFERRLLLYDTQAGTEEYEVSAGVPQGSVLGPTLWNAMYDGILRLSLPHG
FT                 VHMVGFADDVAVLVVAKDLSVVETTCNQTIARIQQWLDLVGLELAPHKTEA
FT                 VLVSSRKKVETANISVAGTLVSSKRAIKYLGVLVDTRLCFREHLAYMGTKA
FT                 ATTNGALSRLMLNTRGPKQWRRQLLTSVTRSVMLYAAPIWAKALRTASYAR
FT                 GLAATHRLSSIRITSAFRTVSDEAAHVIAGIAPLEFLAEERSTYYQETHGR
FT                 GMDAAAKRQVRMACKQESLRRWQQRWDTTTKGRWTHQLIPSIDAWVSRKHG
FT                 QVNFYLTQLLSGHGCFRSYLHRFGHADSAECSWCGHYVEEDAEHAIFSCGR
FT                 FAAQRQRLEEALGGAVVKQSLVPCMLLSPENWEATSCFAATIMRELRAVEH
FT                 QTRVQLX"
XX
SQ   Sequence 4226 BP; 1020 A; 1198 C; 1228 G; 761 T; 19 other;
     acgcttcctg gccgtcccac tatggtggtt gcgcaggctt ggttgatcca tatcccaact        60
     akcaccgatc tggctctgaa ccctggtgct cataaggccc agggtcaacc ctcgcatggg       120
     cctcactcca cggaaagaca cccatgggat cacctacgta ctgcggccag gaataacgaa       180
     ctcgagtgga gattcttttt acatggamaw cacccctcac acaccaaama cacagatwga       240
     gaagatgact gaggacgcag tctttggtag gcgcaacgcc agatccccac caccgtcagc       300
     acctgcgaaa gctcagggct cgagcatgtt caagcccwkc scggcaaaga gaaggascga       360
     ccgcactctg acccattaga gctgctaaaa aacctgggta ctcgggccaa tgagctggtc       420
     aagaggatga acgacmagcg gcatgtggac aacgtgatga aggatttagc cctgagagtg       480
     gtaacccttc aggccctggt ggtcaacaat ttcgagaagc tgcacaccag gacaattggg       540
     tgctgcsaaa cagctgcgaa gccgccgcac accggctcaa agaggctgcg cgagtcgcct       600
     caaatggctg ckgagcccac aaagaggcag aggggcacaa agcttcagca agcktcgacc       660
     cagctcaaac cgccggcgca gtcccaggat gaactaaccc cctcgggtac accagcgcca       720
     ttaaaagcct gaggccatcg ttcgctggta cgcaactggc agttgtgtgc ctgccgcccg       780
     tgcaggcaag agccctgctc atggtgggga aacttaaagt cggatggaca agctgtagga       840
     tccgggagcg gacagctcaa mgacgatgct acaggtgtct ggagtttggg cacctagcaa       900
     tcaggtgcaa gagcgcggtg gatcgcaccg gatgctgcct cagatgcggc gtgaacgggc       960
     acaaggcggc aacctgccaa agcgatccgc ggtgtttcat ctgcaccgct aacaacagca      1020
     atgagacgaa ccattatgcg ggtagcagga gatgtccwgc agccaggagc gtgcccacgc      1080
     caataatgaa ggttatgcag ctcaacctca accactgcgc tgcggctcaa gacctgctga      1140
     gccaawccgt aagagaattg gcaattgacc tcgccatcct cagcgagcca taccaaacta      1200
     gggagtcccc tgggttcatc ttggatgcca ccaaaaaggc cgcgatatgg ctatgcgggg      1260
     ccacgccatt gcagctttcc ctctcaagcg ctgcgctggg tttgtgcgcg ccaaggtcgg      1320
     aggtgtgtgg atatacagcg tctacctcgc cccaagcctg acgctctccg agttcgcagg      1380
     tactctagac aacctagcgg ctgatgctag aggacgtcac ccagtagcca ttggagggga      1440
     cttcaacgcg tgggctgagg agtggggaag cgtggcgacg aatgcgagag gtagagctct      1500
     gctggagatc attgcgcccc tggacatcgc gctcctcaac gagggaaacc agcatacctt      1560
     ctccagagca ggaataggat ctgtcatcga ccttacattt gtcagcagct cactttttaa      1620
     ttcatcgggc tggagcatca gcaacatcta cacagggagc gaccacaggg caattatatg      1680
     ggacacaggc caacagacgt ctagcgtaga gacagctgcg cccagatgga gatgctatcg      1740
     cgccgaaacg ctcaatacgg ccctgttcat gsagcttatg tccaacctca cggcgaatgg      1800
     aaatgctgaa tgcatggcca accatgtcat ggagcatctg gaggcagcat gcactgccac      1860
     catggcgcag aggaagcact acggtcgcca ccaccaacct gtgttctggt ggaacgagga      1920
     cattgccgcg ctacgccggg aatgcaacca agctcgacgc cgctaccagc gctcgcgcgg      1980
     aagcactgcc tttccgcaat ggcaatccac gtttagggac tgcagaaggg ccctcaaggc      2040
     ggccattagg gatagcaagc gccagtgctt tctcaagcta tgcgactctg cggagcagga      2100
     cccatgggga agggcgtaca agttggtgac gaacaaactt tgcgccaaga ggcaggcacc      2160
     cccatcggac cccgacacga caagatccat cgtggaggaa ctctttccgc acagggctga      2220
     ccacatcggg gatgtccgtt gcctcacact gcaaccgcac agtcaggcac acatcgagga      2280
     ggtgtcactc gaggaagtcg aacgcgcagc caggagcatc agcccgaaca aggctcctgg      2340
     gccggactct atcccgaaca gagccctctt gctcgccctc tccacgcgtc cggacatctt      2400
     tgcgaagctg ctmaatcagt gccttcgtga aggagtgttc cctgtgaggt ggaaaatcca      2460
     gaagctagtg cttattccca agccaggcaa gccgccgggg acagcgtcgt cgtataggcc      2520
     tatctgcctg atcgacaccg cgggtaaact gcttgagaag gtggtttgcg cgcggctgga      2580
     acgctccatc gcggaggctg gcgacctctc accgcaccaa tacggctttc gcaaggcccg      2640
     atccacgata gacgccgttc gtaaggtggt ggacattgcc tccggtgcaa ttgccggcac      2700
     tcggtggaaa ggcggcggga aagagtattg cctagtagtc actctagaca ttaagaacgc      2760
     gttcaacacg gcgaggtgga gctgcatcct aagggcgctg gagagtttcg acacacccag      2820
     gtacctgcag cggatggtac aaagctactt tgagagaagg ctgcttttgt acgacacgca      2880
     ggctggcacg gaggaatacg aggtatcggc aggcgtcccg cagggttcag tgcttggccc      2940
     cactctgtgg aacgcaatgt acgacggcat cttgcgactc agcctccccc acggagtaca      3000
     catggtgggt tttgcagacg atgtggctgt cctagtggtg gcaaaagacc tgtccgtcgt      3060
     ggaaacgacc tgcaaccaga cgatagcgcg catccaacag tggctggacc tggtcgggct      3120
     cgaactcgca ccccacaaaa cagaggcagt gctggtatcc agccggaaga aagtcgagac      3180
     ggccaacatc tcagtggcag gtaccctggt ttcgtctaag cgcgctatca aataccttgg      3240
     tgtcctggtg gacacacgtc tctgctttcg ggagcacttg gcctacatgg gcacgaaggc      3300
     ggcgaccacc aacggtgcgc tctcgaggct aatgctgaac acccgaggac caaagcaatg      3360
     gcggcgacaa ctgctaacga gtgtcacgag atcggtgatg ctatatgcgg cgccaatctg      3420
     ggcaaaggcc cttcgaacag cgagctacgc acggggtctg gcagccacgc accgcctctc      3480
     ttcgattcgg atcaccagtg ccttccgaac ggtctcggac gaggcagcac acgtgatcgc      3540
     gggcatagca cccctggaat tcctggcgga ggaacggtcc acatactacc aggaaacaca      3600
     tggcagagga atggacgcgg cggcgaaaag gcaggtacgc atggcgtgca aacaggagag      3660
     tctcagaagg tggcaacagc gctgggacac gaccactaag gggcgttgga cccaccagct      3720
     tatcccgtcc atcgacgcgt gggtaagcag gaagcacggg caggtcaact tttacctgac      3780
     tcagctcctc agtggtcacg gctgcttccg aagctacctt catcgcttcg ggcacgcgga      3840
     ctccgcagaa tgctcttggt gcgggcacta cgtggaggag gatgccgagc atgcgatatt      3900
     ttcgtgtggc aggttcgcag cgcagcgcca gcggctagaa gaagcgctgg gtggggccgt      3960
     agtcaagcag agcttggtgc cgtgcatgct cctgtccccg gaaaactggg aggcgacgag      4020
     ctgcttcgcg gcgaccatta tgagggaact gcgcgctgtt gagcaccaga caagagtcca      4080
     gttagwctaa acgaagcctg cacatgtgtg aagcattgct tcacggccgt accacacatg      4140
     ttgggcttgc atagcctaac ctctaatata gtttgcttta agtataatgt aaatacgagc      4200
     aattaaatgg aattaaaaaa aaaaaa                                           4226
//
ID   R1-4_DSuz   repbase;    DNA;    INV; 5518 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   05-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5518
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 607-607 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           389..1828
FT                 /product="R1-4_DSuz_1p"
FT                 /note="zinc fingers."
FT                 /translation="MAPSPMETEGGCSGSESASSRGSVSVGRKGRPKGKRG
FT                 RGAAARDASQAKIVAVDGVGGGPEPLVEETLSSLEMPPPPAPAARAASADA
FT                 DVAASAAVAASAAVAASADTDASADAATAAAAGDAAKHDHAMEVVRGGPGR
FT                 ISAEVAKIRTEVILDTSVIVRSSTRELLLVVAKYEALISALTLRNAVLEDR
FT                 HRQSKKAPPPPPPPTTQAAAPRMPAAYASAYPSLPMPSAVPVPMPRKPRET
FT                 WSAIVHSSDPKISGKELADKVRKEIAPSLGVRLHEVRGLARGGAIIRTPSS
FT                 GEIQKVVANKKFVEAGLEVKQSPAQTPKIVVSNVDTATPPEEFMSELYKNN
FT                 FADKMTLELFKKQVRLEKSWSQADGATVNVTLEVSTTALDVLDGGKAYIGW
FT                 FAYNCRALVRTYACHRCVGFDHKIKDCRYKENVCRQCGQTGHSARACQNPV
FT                 DCRNCRFKGYQSGHHMLSPGCPVYAAVLARVNSRH"
FT   CDS           1831..4941
FT                 /product="R1-4_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFRFIQANCGRGRAATIELGVRLLESKSLFALVQEPY
FT                 VGVERINVLPDGVRSFVDQRGKAAIYVNHQDVICMPVEPLTNNYGVCVYIK
FT                 GSFGSIFLCAAYCQFDSDEDYSLQSYLAYLDAVLLLASSTPAILGLDANAA
FT                 SPMWFSKLPPHAEGLANYSRGELLSEWILTKGAVVLNQPSRSYTFDNNRSH
FT                 SDIDVTLANFAGDMLATYEWRVDEWELSDHNIISVVANPTTATAVESLAPV
FT                 PSWNFSNARWRLFEQELVNRAAEIPEDFQVSPLDQQVSTLRRMVHDVCDLA
FT                 LGRRTPGPPRTRVGWWTADLCAKRRQVRRLRRRLQDARRHHDDDVAEQIVV
FT                 ELRHATADYKKLIVKTKEDSWRRIVGENSHDPWGRVYKMCRGRKRRTEIGS
FT                 LRVNGELVTNWGDCARVLLRNFFPAAESDAPIVSAEEIPPPLNVSEVDACV
FT                 ARLKSKRSPGMDGINGTICKAVWRAIPQHLTALYSSCIRSGYFPAEWKCPR
FT                 VVALLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVDRVREVLPEGCRWQF
FT                 GFRQGRCVEDAWRHVKSSVEASSARYVLGIFVDFKGAFDNVEWSAALRRLA
FT                 ELGCREMGLWQSFFSDRRAVIRSSYEEVNLPVTRGCPQGSISGPFIWDLLM
FT                 DVLLRRLESYCTLSAYADDLLLLVEGESRNVLETKGAQLMSIVEAWGMEVG
FT                 VAVSTSKTVIMLLKEDPRHRLARTSSRALSRAPAVKFAGANLPYVSSCRYL
FT                 GITVEEGLKFFEHFTVLKRRMTGVVGALARVLRADWGFSPRARRTIYAGLM
FT                 VPCALFGAPIWYVSTTQQVVANRRLLACQRLILMGSLPVCRTVSTAALQVL
FT                 AGAPPLDLVAMQMAAKYKLKRGYPLEEYDLCHGEDFTSLSRGQMMVRMEQC
FT                 LLQTWQDRWDDVESTGRVTYKFIPDVELVYRDPNFGFTMRTGFLLTGHGSM
FT                 NAFLCRIGTMPTAACLCGAPCEDWQHVLCDCPNYADLRDLDGLGVQQDGGN
FT                 WIGFDGILVDQERTRRLTTFAEEAFNRRRDL"
XX
SQ   Sequence 5518 BP; 1199 A; 1410 C; 1705 G; 1203 T; 1 other;
     cggacgtgtg ttttctcgtg gtcccagtca tttcgtcata tcttgagaag tacttggtgt        60
     acaaagacaa attttgcgtt aaaattcgtg ccttaacgaa aggaatacgg tggtgcaaaa       120
     atatttgcgg aaaatcagcg acgagcgcgg aaatcggcgt tttccttttg ggaaaattcc       180
     acacacgtgc acgccgcgtg tgcttaggag agcgctttcg agagagcgct ttcgagagag       240
     cgctttcgtg agagagcttt tgcgagagcg caggtgttcc ctctcccgcg cgtgattact       300
     ctcgcgcatc agctgtgcgt gtaccgccta agctttctta tcgggtaagt gagcttgctc       360
     gaggaaaagt ttagagggta ggtgggcgat ggctccatct ccgatggaga cggagggtgg       420
     atgctcgggc agtgaatctg ccagcagtcg aggtagcgtm agtgtcggac gaaaaggccg       480
     tccgaagggg aagcgtggac gaggtgctgc cgcacgggat gcctcgcagg caaaaattgt       540
     tgccgtggat ggagttggag gcgggccaga gccccttgta gaggagacgc tctcctctct       600
     ggagatgccg ccgccgcccg ctcccgctgc tcgcgctgct tctgccgacg ccgacgtcgc       660
     tgctagtgct gccgtcgctg ctagcgctgc cgtcgctgct agcgctgaca ccgatgctag       720
     cgctgacgcc gctactgctg ccgctgctgg agacgcagca aaacatgacc acgccatgga       780
     ggtggtgagg ggtggccccg gacggatttc cgcggaagtc gcgaaaattc ggaccgaggt       840
     catactcgat accagcgtca tcgtgaggag ctccaccagg gagctcctgc tcgtcgtggc       900
     caaatatgag gcccttatct cggcgctcac gctgcgcaac gcggtcctgg aggacagaca       960
     tcggcagtct aagaaggcac caccgccgcc gccgccgccg accacccaag ctgctgcccc      1020
     gcggatgccc gctgcatatg cttcggcata tccaagcctc ccgatgccat ccgctgtccc      1080
     ggtcccgatg ccgcggaaac cgcgcgagac ctggtcggcc atcgtccaca gttccgaccc      1140
     gaaaatttcg ggtaaggagc tggcggacaa agtcaggaag gagattgctc cctcgctagg      1200
     agtgcgtttg cacgaggtga gagggctggc gcgtggcggt gccatcatcc gcaccccatc      1260
     gtccggcgag atacagaagg tggtcgcaaa caaaaagttt gtagaagctg gcctagaggt      1320
     caagcaaagc ccagcgcaaa cgccaaaaat agtggtcagc aacgttgaca ctgcaacgcc      1380
     gccggaggag ttcatgagcg agttgtacaa aaacaacttc gctgacaaga tgactctgga      1440
     attgttcaaa aagcaggtgc gactggagaa gtcgtggtcg caggcggacg gcgccacagt      1500
     taatgtgacg ctggaagtca gcaccacggc cctcgacgtg ctcgacggcg gaaaggccta      1560
     tattggctgg ttcgcctaca attgccgggc gttggtgcgc acatacgcgt gccacagatg      1620
     tgttggcttt gaccacaaaa taaaagattg ccgatacaag gagaacgtct gccggcagtg      1680
     cggacagact ggccacagtg cgcgagcgtg ccagaacccg gtggactgcc ggaattgccg      1740
     cttcaagggc taccagtcgg ggcaccacat gctgtcccct ggatgtccgg tatacgcggc      1800
     ggtgcttgca agggtgaatt ctagacatta atgtttaggt tcatccaagc aaactgtggt      1860
     cgaggacgag ctgcgaccat agagctcgga gtccggttgc ttgaaagcaa gagtctgttc      1920
     gcactggtgc aggagcctta cgtgggcgtc gagaggataa atgtgttgcc ggatggagtg      1980
     aggagtttcg ttgatcaacg agggaaggca gccatttatg tgaaccacca ggatgtcatc      2040
     tgcatgccag tggagccgct caccaacaac tacggtgtgt gtgtgtacat aaaggggagt      2100
     tttggctcaa ttttcctttg cgccgcatac tgccagttcg atagcgatga ggattatagc      2160
     ctccagtcgt atctagcgta cttggatgct gtcctgctgc tggccagcag tactccagca      2220
     atccttggac tcgatgcgaa cgcagcatcc cccatgtggt ttagcaaact ccctccccac      2280
     gcggagggac tagctaacta ctctcggggt gagctgctgt ccgagtggat actgacgaag      2340
     ggagcggtgg tcttgaacca acccagtcgg agctacacgt ttgacaacaa cagatcgcac      2400
     agcgatatcg acgtgacact cgccaacttc gcaggagata tgctagccac atatgaatgg      2460
     agagtggacg agtgggagtt gagtgaccac aacattattt ctgttgtggc caacccaacg      2520
     accgccacag ccgttgagag cctagctccg gtaccgtcct ggaacttctc caatgcacgt      2580
     tggcgtctgt tcgaacagga attggtgaat agggcagccg aaattccgga agactttcaa      2640
     gtatcgccgc tggaccaaca agtctccaca cttcgcagga tggtgcacga tgtgtgcgac      2700
     cttgcgttgg gtaggagaac gcccggaccg ccgagaacga gggtaggttg gtggaccgct      2760
     gacctctgcg caaagcgccg ccaagtcagg agactcaggc gccgtcttca ggatgccaga      2820
     cgccatcacg atgatgacgt ggccgagcag attgtggtcg agctgaggca tgccacagcc      2880
     gactacaaga agctcatcgt gaagaccaag gaggacagtt ggagacgcat cgtgggagag      2940
     aactcgcacg atccctgggg gcgcgtctac aagatgtgcc gaggtcgcaa gagacggacg      3000
     gagattggga gcctccgcgt gaatggcgag ctggtcacca attggggtga ctgtgcgcgt      3060
     gtgctcctcc gcaacttttt cccagctgcg gagtctgatg caccgattgt ctccgcggag      3120
     gaaatcccac cgcccctgaa tgtctcagaa gttgatgctt gtgtcgccag gttgaagagc      3180
     aaacgctcgc ctggcatgga cggtatcaac gggacgattt gtaaggctgt gtggcgcgct      3240
     atacctcagc atctgacggc gctgtattca agctgcatcc ggtcgggtta tttccctgca      3300
     gagtggaaat gcccgcgtgt cgtggctctg ctcaaggggc ccgacaagga taagtgcgaa      3360
     ccgtcgtcgt accgtgggat ttgcctgctg ccggttttcg gcaaggtgct cgaggccatt      3420
     atggtggatc gtgtgaggga agttcttccg gaaggctgca gatggcaatt cggatttcgc      3480
     caaggacgtt gtgtggagga tgcttggaga cacgtgaaga gcagcgttga agccagctcg      3540
     gcgagatacg tgctcggaat cttcgtggat ttcaaaggag ccttcgacaa tgtggagtgg      3600
     agtgctgcac tgcgccgatt agccgaactg ggatgccgag agatgggctt gtggcagagc      3660
     tttttctcag atagaagagc agtgatccga agcagttacg aggaagtcaa tctccccgta      3720
     actagaggct gtccgcaggg gtcaatcagc ggcccattta tatgggactt gctgatggat      3780
     gtactgctcc ggcgccttga gtcgtactgc accctgagtg cgtacgcgga tgacctgctt      3840
     cttctcgtcg agggagaatc ccggaacgtg ctggagacaa aaggagcgca gctgatgtcc      3900
     atcgtagaag cgtgggggat ggaagtcggc gttgccgttt ccaccagcaa gacggttatt      3960
     atgctgctca aagaggaccc tcgccatcgt ttggctcgta cctcttcgcg tgcgcttagt      4020
     cgcgcccctg cggtaaaatt tgcgggagca aatttgccgt atgtcagcag ctgccggtat      4080
     ctgggcatca cggtcgaaga aggcttgaag tttttcgagc acttcacagt gctaaagcgg      4140
     cgcatgaccg gagtcgttgg agcattggcg cgtgtgcttc gagcagactg gggattcagt      4200
     cctcgagcca ggcggaccat ttatgccgga ctcatggtgc cttgtgcgct atttggtgcc      4260
     ccgatatggt atgtcagtac gacgcagcaa gttgtggcca ataggcgact ccttgcttgc      4320
     cagaggctta tccttatggg aagccttccg gtatgccgaa cagtgtccac tgcggcactg      4380
     caggttcttg ctggcgctcc cccgcttgat ttggttgcca tgcaaatggc agctaaatac      4440
     aagcttaagc gtggataccc gttggaggag tacgatctgt gtcatggcga ggacttcaca      4500
     agtcttagcc gggggcagat gatggtgcgt atggagcagt gcttactgca gacgtggcaa      4560
     gacagatggg atgacgtaga gtcaaccggc cgggtgacct acaaattcat cccggacgtc      4620
     gaacttgtct atcgcgatcc aaattttgga ttcacgatgc gcaccggatt tctgctcaca      4680
     ggacatggat ctatgaacgc atttctgtgt aggatcggta cgatgcctac tgccgcatgc      4740
     ttatgcggcg ccccttgtga ggactggcag catgtcctat gtgactgccc gaactacgcg      4800
     gatttgcgtg acctcgatgg acttggtgtg cagcaagatg gcggaaactg gatcggattc      4860
     gatggaattc tggtggatca ggagaggacc cgacggctta cgacgttcgc cgaggaggca      4920
     ttcaaccgga gaagggactt gtagtctcca ccacttgccg tgtggtagcg gcgaagaata      4980
     ctgccacagc ctgtcatagc ttgtcgtagg aggcgactaa tatggcaaat ggttgcccca      5040
     tccgagcttg tcggagctga aggggtgagg ctcaccgagc ctgtaatttc ggtaccacgg      5100
     gttgagcagc tccaagactg ctcattgagg ttggccccct tgtgggagta tcgtggtggc      5160
     tgtggttgac acctatatcg cgggtagagt cctcgggctc gacgtggatg ttgcgtaata      5220
     caactcgggt gctgtgaccc acagaacggt agagatttta gatagatctc gcccctacgc      5280
     aagggggagt gcttgcccga caagtaagta ctcgaattgc tactggggtg gttgctatgt      5340
     acatagctat agctgctagt ccagggcgtt ggtttggcgc tgaacctaga cccgtgcatt      5400
     atatactcac ttgtgggtat attagaatgc cgtggttgta atcccttcat tgtggaacac      5460
     gccacgtaaa ataagttcgg agggatccga gacacaccct gtccctatct actatcta        5518
//
ID   R1-4_DTa    repbase;    DNA;    INV; 4694 BP.
XX
AC   .
XX
DT   25-JUL-2021 (Rel. 26.10, Created)
DT   25-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4694
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5917-5917 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1588..4539
FT                 /product="R1-4_DTa_2p"
FT                 /translation="MLRFIQLNLNHCRVAQDLLTQTIVELRIDVAILSEPY
FT                 RTIRSNTWVADPTEKAAIWSCGQNTRHFSGVKAAKGYVRTKLNDLWVYSCY
FT                 LPPSWPLKDFSEAIDNLVIDASLHSPAMVAGDFNAWATEWGSAYTNARGKI
FT                 VVEAFASLDLLLLNAGSNPTFSRAGGQSIIDLTFLSTRLAASATWEISEAY
FT                 TESDHRAIITTLNMQRSAPRISTRSHYKEGTLNIQTFRATLAGMEALEHEE
FT                 AVMTKVKEACDASMQCSRRFNGHRPVYWWNQEIEEARRECISARRAYHRSR
FT                 GNQSFLFLREIYTQKRKVLKKAIQSSKKRCFHELCDEAENDLWGRAYKVVM
FT                 KKTNGLKNSAPTDSATLGGIVRHLFPAQEERQEDAIPSILQPQPVTQEEVV
FT                 KIAQRLSNNKAPGPDGIPNRALKMAISLHPATFARMYTKCLSQSRFPTRWK
FT                 QQNLVLIPKPGKARDDPSAYRPICLLDTAGKVLESIISQRLGEAIEAAGGL
FT                 SDSQYGFRKARSTLDALETVDKIARSAIAGTRWLGGTKEYCLVATLDIKNA
FT                 FNSASWSRIISALERLDIPPYLRAIVSDYLDNRWLHYDTDDGPQIYRVTGG
FT                 VPQGSVLGPLLWNTMYDGILRLDFQPGVNIVGFADDVAVVVVQKDKEDVES
FT                 TANGAIRMIGDWLRLAGLELAEHKTEAVLISSRTAVETVEITVGESTITSK
FT                 RAIRYLGVMLDTRLTYKEHLQETHKKARGVTAALSRMMLNHRGPKSSSRRL
FT                 LFNVAKSTILYAAPIWAQECKESYLSGINRDYRLGALRVSSAFRTVSTEAI
FT                 LVISGIIPVELAAIEAKENFXARKAANSLPDRSLAKLRARTKALESWQQRW
FT                 NAATTGRWTHRLIPSIAEWFNRKHGELTFELTQVLSGHGCFKEYLCRFGKE
FT                 ASPLCDVCRVPESADHVLTSCVRFGEARGKAEEVLESRITAENLVPGMLES
FT                 QAKWTAVCLLATEITRELRRLERIRNGQS"
XX
SQ   Sequence 4694 BP; 1395 A; 1216 C; 1241 G; 829 T; 13 other;
     gtcagcggtg agactcctac tggaagtggt acgtaccaaa ctggccggcg tgctgaaggg        60
     aagttacggc gacgcctggt taaaaagggt gctccatcca gtacagaggg aggggcagtc       120
     gcccagaccc aaacaccttt ccatcccgct cactccccaa gggaaatcca aaaacaaagt       180
     ttttccgcgg ggaaagaagc gttttccctt ttccttcctc actttttgca actggtcaaa       240
     cagctggtcg acagtgctgg ttagagcgca atcaacagct gattgacgca gggcgcccac       300
     gacaacaagc cattgcatac ttttaggccg atctctattt gcacaaacaa acgtcgtagc       360
     actcaccttc tgtcagggct tacaatcgga ttgcctactt actggggctc ttacagtcca       420
     ctaagggaag cgaggcagaa agtcaaggac ccgacaacat ccaacccctc cgcccaaggc       480
     ggcgcctsgg caamcggggc tctggggacc gaaaaggggc ggtgtamccc ccatcgwtag       540
     gaagtcwggg ggaaatcckw ggccakcggk ggagccgatg cgtgaccagc tcaccgaact       600
     gctgcatctg caagagacgg cagaagccct ctccaagcag gaaaaaagcc gcgccttaga       660
     gctaaaggac cagtaagctt tctctgtggc ctagaaggag cgaaagcgac cccgaaaagg       720
     cctcgagacc aaacggccgg tcaaggtggg tcsccaccga ataagaggag gtttaatggg       780
     agactaacaa gtaggctgga accagaagcc gaaccccgca agagaaatga accgaacccc       840
     gctggaaagg ggaaaaaact gggccagaac aggacaagga cggatgccat agtggtggct       900
     agcgctggaa acctgacgta cgctgacttt taaaagcggt aaaaggagat gcgtccctga       960
     gccacgtcag cggagatgtg caaacaatcc gtaagacggc taatggagac ctactgctgc      1020
     ggctgaagaa agcccctggc cacagcgcag aggaggtaaa aacggcagtc ggtaaagccc      1080
     tcggagccaa agcmacggtg agggccctga cagagcagac aaggctcgag attctgaacc      1140
     tcgacgaggt aacaaccaaa gaggaaatag cggaggcgat aaacaaggaa actggaggta      1200
     caccagtcgc agtggaccaa tcaggtccct cagagccact agaggcggct gccagatagc      1260
     gacactgacg ctgccaacaa cgacagctaa cgtgctgtta accatgggca aactacgaat      1320
     cggatgggtt atttgccgaa tcaaagccat actttcgcct atgagatgct acaaatgcct      1380
     tgagtttggt cacatatccc caaactgcac agcagccaaa gacctgagag gagcttgctt      1440
     caaatgcggt gagaaagacc acgaggccag aaactgcagc agggacccgc actgcatact      1500
     ctgtgcccaa aagaaggatc tcccaacgaa ccacccgtct ggtagcttta aatgcccggc      1560
     gtacattgag gctgtcaaga aaatccaatg ctaaggttta tccaactgaa cctaaatcat      1620
     tgtcgggtgg cccaggatct tctcacccaa acgatcgtag agctcaggat agatgtggca      1680
     atcctcagcg aaccctatag gactattaga tcaaacacgt gggtcgcgga tccaacagag      1740
     aaggctgcta tctggtcgtg tggccaaaat accagacatt ttagtggtgt aaaggctgca      1800
     aaaggttacg tcaggaccaa gctaaatgac ctgtgggtct atagctgcta cctgccccct      1860
     agctggcctc tcaaggactt cagcgaggca atcgacaacc tggtcatcga tgccagccta      1920
     cactcgcctg cgatggtcgc tggtgatttc aatgcatggg ccaccgaatg ggggtcagcg      1980
     tacacaaacg ccagaggaaa aatagtggta gaggcattcg cctcactaga tttactcctt      2040
     ttgaacgccg ggtcaaaccc cacatttagt agagcaggag gacagtcgat aatcgacctc      2100
     acattcctaa gcacacgctt ggcagcgtcg gcaacatggg aaattagcga agcctacacc      2160
     gagagcgacc atagagccat tattaccact ctcaacatgc aaagatccgc gccgagaatc      2220
     tcaactcgca gccactacaa agaagggact ctaaacatcc aaacattcag ggcaacgcta      2280
     gcaggaatgg aagctctcga acacgaagag gcggtgatga caaaagtcaa ggaggcctgc      2340
     gacgccagca tgcaatgcag tagacgcttc aatggacaca gaccggtcta ctggtggaat      2400
     caggagattg aagaagcccg ccgagaatgc ataagtgcta gaagagccta ccacaggtcg      2460
     cggggaaacc aaagcttcct gtttctcagg gagatataca cccaaaagag gaaagtccta      2520
     aaaaaggcta tacagtccag caaaaagcga tgcttccacg aactgtgtga cgaagcggag      2580
     aacgacctat ggggcagagc atataaggtg gtaatgaaga agacaaacgg gctcaaaaac      2640
     agtgcaccaa cagactctgc aacacttggg gggatagtca ggcatttatt tcctgcccag      2700
     gaagagcggc aagaggatgc catcccatcg atcctccaac ctcaaccagt gacacaggaa      2760
     gaggttgtca aaatcgccca acgactgtca aacaataagg cgcccggtcc tgacggcata      2820
     ccaaacaggg ccctcaagat ggcgatcagc ctccacccag caacattcgc taggatgtac      2880
     acaaaatgcc tgtcacaatc ccgtttccca acaaggtgga agcagcaaaa cctggtkctc      2940
     ataccgaaac cggggaaggc tagagacgac ccgtctgcat acagaccaat ctgtctcttg      3000
     gacactgcgg ggaaagtgct tgaaagcatc attagtcaaa gattaggcga ggcaatagag      3060
     gccgccggtg gactgtccga tagccagtat ggctttagga aagctcgctc aaccctggat      3120
     gccctggaaa cggtagacaa aatagcccgg agtgctatag cgggtacacg ttggcttgga      3180
     ggaaccaaag agtactgtct ggtggctaca ctggacataa aaaacgcatt caactccgca      3240
     tcgtggagca ggataatctc ggccctcgag agactagata tcccaccata tctaagggcg      3300
     attgttagcg actacctcga taacagatgg ctacactacg acacagacga cggcccacaa      3360
     atctacaggg tcacgggcgg agttccgcaa gggtctgttc taggccctct actatggaac      3420
     accatgtatg atggcatcct acgactggac ttccaaccag gagtaaacat cgtaggtttc      3480
     gccgatgacg tcgcggtagt agtggtacaa aaagacaaag aggacgtgga gagcacagca      3540
     aacggggcca tccgtatgat tggggactgg cttagattgg ctggccttga actggcggaa      3600
     cacaaaaccg aagcagtgct cataagcagc agaacagcag tggaaacggt agaaatcaca      3660
     gttggtgagt cgactataac ctcaaaaaga gccatcagat acctgggtgt catgctagac      3720
     acacggctaa cctacaaaga gcacctacag gaaacacata aaaaggcccg tggcgtcact      3780
     gcggcattat cacgcatgat gctaaaccac agaggcccga aatcatcgag tcggagactg      3840
     ctcttcaatg tagcaaagtc taccatcctc tacgcagcac caatctgggc ccaagaatgt      3900
     aaagaaagct acctgagtgg tataaaccga gactacaggc tgggggcact acgagtaagt      3960
     tcagccttcc gaacggtctc cacagaggcc atactggtga tcagtggcat aattcccgtg      4020
     gagctcgcag cgattgaagc caaggagaac ttcsaagcga gaaaggcagc aaactcacta      4080
     ccggaccgca gcctggcgaa acttagagcc agaaccaaag ccctcgaaag ctggcaacag      4140
     aggtggaacg cggcaacaac tggccgctgg acgcaccgtc ttatcccaag cattgcggag      4200
     tggttcaacc gtaaacatgg ggagctgacc ttcgagctaa cacaagtgct tagcggacac      4260
     ggctgcttca aggagtacct ctgccgtttc ggcaaagaag caagccccct gtgtgacgtt      4320
     tgtagagttc cggagagtgc tgaccatgtg ctgacatctt gcgtcaggtt tggagaagca      4380
     cgagggaaag cggaagaggt cctggaatcc cggatcacgg ccgaaaactt ggtaccaggc      4440
     atgctagaaa gccaggccaa atggacagcg gtttgcctac tggcgacgga aattacgcgt      4500
     gagctgaggc gtctagaacg catacgcaac gggcagtcct aaaacctggt cgtccaaaaa      4560
     gagcagctgg tcttgcgaag caatgcttca tggcagtacc gcaagcccag caattccccc      4620
     caccccctgt atatgtatat gtaaaagtat cttgtactaa attaccgttg aataaaaaaa      4680
     aaaaaaaaaa aaaa                                                        4694
//
ID   R1-4_DVi    repbase;    DNA;    INV; 2429 BP.
XX
AC   .
XX
DT   09-NOV-2011 (Rel. 17.09, Created)
DT   09-NOV-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2429
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1954-1954 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.  5'-truncated.
XX
SQ   Sequence 2429 BP; 677 A; 663 C; 621 G; 464 T; 4 other;
     ccttacgtca tgctcaatgg acttgggtca cggagttagc agaaaacatc tcggatgcgt        60
     gctagaaggc gctcccaacg tgcccgaggc cacccagact tttcatctag gctggaagac       120
     ctgcggccag ccaagcgaga cctcaagaga agcatcaaac aaagcaaatc cacctgcttt       180
     cagaaaatat gcgatgaggc cgatgaggca cggcatacaa gatcgtcacg aatatgatcc       240
     gtagccaggg aaatacccat gtgacctgcc taccgcactt gccactatag ttgagacact       300
     gttcccccaa cacctacgac tggaagtagc caacagctta cgcagcacgg agctagtgca       360
     acaggtgtcg gcagacgaag tgttagtggc aagcaaaaaa ctaggcgacc aaaaggatcc       420
     agatcaccaa ggctatcaag cgaagcaagc ggcaatgctg gatgcaactc tgcgacgaag       480
     ccgacaccca gcccttcgga caagcctaca aaacggtaat cggcacaact cgcaagagga       540
     cccgcaccga cctgagcaga gcatctaaag cagatagtgg agacactgtt cccgcgccag       600
     atagagccac gccacaaccc tccagccgta ggcacgtcgg tggtgcctcc catcgacaca       660
     gaagacataa gtgccgcgct aaagcgcatt aaatcaaaca aagggccagg gtccgacggc       720
     acctccaatg cagtgctgaa gaccatgcta gcgctcacgt agacacagtc gtaaatgtgt       780
     tcaacctatg cattgccgag agaacctttc caacgtgctg gaagttgcag agactggtcc       840
     ttatccctaa agccggaaca ggaccccccg cctacaggcc actctgcatg ctggactcca       900
     cgggcaagct cttcgagcgc atcatctgcg atcgtctgga gaaggagatc gctgatcgct       960
     acggactgtc ggaccagcag ttcggcttcc gtaaacacag gagcactgtc gacgctatca      1020
     agttggtagc ggacacggca gggaaggcca tatgaggcac gcgatgtcgc ggcggatcca      1080
     aaaagtattg ccttgtgagc gatacggctt accggccaat atactcctgg cactctccag      1140
     gctgcaaatc tccgagtacc tcatcagtct tgttgccgga tacttcaagg accgggtact      1200
     catatacgac acgactgmwg gacgacgcaa gtacgccatt actgggggcg ttcctcgcag      1260
     acgacatcgc aatcgtcacg gtggcgaaag agaaagcgca ggtggagaga aaaaccaatg      1320
     aagcagccca caaggtgact aggtggattg tagaaaatgg cctcaactta gctgcgcaaa      1380
     aaacagaggc agttcttatc agcagccgga agcaagtgga agccgccaac atcacagtgg      1440
     acggcactga agtagcttcc aagctctcta taaaatatct aggcgtcttg ctggatcaca      1500
     ggctcagctt caagcaccat tagatgcgca ggtgaaaagg cgagtagagc tataaatgca      1560
     ctatctggca taatggcgaa cactggaggc cctagacagc gcagcagacg gctgatctgc      1620
     aacgtggtcc agtcgatgct cctctacgcg tcatcgatct ggggaccagc aatgaggatc      1680
     ccctcctaca gccacaaatg ggcatcgtaa agaagatgcg cactccgagt cctctgctct      1740
     tttcggaccg tctcagacga cgcagctcta atctggccgg aatgcccccg ctggatctac      1800
     tttcaacaga agagcggacc gtagcackcw gccggcagac aacactagaa gaatggcaag      1860
     cacgatgggc gtcttcctcc aatggcagct ggactaaacg catagtcccg gacctacggc      1920
     cgtgggtaag caggaagcac ggaaaaaccg acttctactt gacccagcta ctgacaggac      1980
     atggatgcct taaatcctat ctccttaggt ttaggcatga gacggatccg ttttgcacac      2040
     actgtgcgcg gaccataggg ggcgcagaac acgtattttt tgtctgtccc agattttctg      2100
     ctgaacggga agagctaagc caaagtattg ggagaaattt tactgtcact gacttaatag      2160
     atatcctact tagctctcaa aacaattggg ctgcagtaac ccacatggct gcagaaatta      2220
     tcaaatcctt gcgccgcgct aaagacagcg caatcgttct tactctagat aagatcctag      2280
     aagaggcttt catgccatct ccccctcgcg cggtaatacc tagcggtcgt tgcgctagat      2340
     ggaaacggag agtaggcggt gggttcagtg ggttgaaggt ccacactttt cggctttaaa      2400
     tgctatccac cctattaaaa aaaaaaaaa                                        2429
//
ID   R1-4_DWi    repbase;    DNA;    INV; 5059 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5059
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1965-1965 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98% identity.
CC   This family shows no target site specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1925
FT                 /product="R1-4_DWi_1p"
FT                 /translation="MVSPTASMDQHDRQGRFPLSDCASEDLIFARRPLIGN
FT                 SPPAAVGSNPVSVATRAILNSPDVSATASSPPVKSHIAELDELGSLVWQLD
FT                 HTFNNRDDNKKPVRHINLSTKQSIVKMKELYEFLCHRVLAGEFQKVPQRQD
FT                 GATQMTPKANGRNRVLAATNTSDSPKRPREHSPAQRKTPPKKKKNNAPVTK
FT                 PSTATSPLRTDRIDRHHNQDEWQKVTNKRRNRAAAQKQRLPKQRPDAILIA
FT                 NKGNLSYSEMLKLVTCSENEALKSLGENVKKARRTAKGDLLLEMGKPMPES
FT                 LSQISDDIGAALGSQFAASALISETRLDIRELDGETTKEXIVAAFGIRLKV
FT                 KIDVTAIKSLRKSYSGCQRATVSVPTTAANDILQAGTLKVRWNVCPIRLDN
FT                 TPRRCLKCLKYGHIASKCTSETDRTGLCLRCGKSGHKIKECNNSPSCCLCV
FT                 ASGNADYAHTAGSQRCPHGPKGMSTTKQ"
FT   CDS           1928..4897
FT                 /product="R1-4_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRFIQINLNHCEAAQDLLSQTVRELGTDVAIISEPYK
FT                 NFTTTTWAQNNSGKAAIWACGTTPCQIKFPASFNGFVRAKIREYWIFSCYL
FT                 PPSYSLGEFCGVIEELSDQIRCHKPAIVAGDFNAWAAEWGSSSTNARGQAL
FT                 LEAFASIDLALLNTGNGFTFQRGNIGSIIDLTFVTSALCTHARWVLSPHYT
FT                 ASDHNAIICTIDNQRRSERQITRPQIFNSKMLDVQVFTRTLEQHNIEAYTA
FT                 DELNAWLTDACNACMPRKNACPKNHRPAYWWNEEIAKLRKLCHRSRRRSQR
FT                 TRGSEDSESYRLEFEAKRRELKMAIRRSKKACFDALLTEAANYVWGRPYKI
FT                 VMKRLKSFQRIEPPSSIEMDAIVRELFPTQAPSNFVTVNYDVAGIPPVTSQ
FT                 EILTAVGRIKINSSPGPDCIPNEALKIAAFQHPEKFAFAFTKCLNDGIFPD
FT                 LYKQQNLVLLPKPGKQMGEPSAYRPICLLDSTGKLLERIVVDRLDQALQAN
FT                 QAISENQFGFRKGRSTLDAIRKVVKIARNATAGDRWKGGSKEYCLIATLDV
FT                 KNAFNSARWSCILEALHNYRVPPYLLKVVSSYLNNRWLHVDTYDGGKDYSI
FT                 TGGVPQGSVMGPLLWNAMYNGVLNLNMPKGVETIGFADDIALVCVAKHLNE
FT                 VEAVCSNAIFRVQQWLASMGLHLAEHKTEAVLVSSRKKVEIATIQAGTAQI
FT                 TSKSSIKYLGILIDSRLTFKDHLNESAKKARATGAALSRLMCNTKGPTQSR
FT                 RLLLHGVTKAIMLYGAPVWAEAMATKSYARDMESVYRLSALRVCSGFRTIS
FT                 GIAAMVLAGTIPIRLLADETKQLFSKLKDPRITQIERAAIRKRERSISISR
FT                 WQALWDESEKGRWTHRLIPNLETWLNRRHGEVNFNLTQLLSGHGCFRSYLY
FT                 RFRHAASPACPWCNNGEEETAEHILFSCGRFDTHRRNLQVVLGVQASATNL
FT                 VPLIILRKANWDAFNKFAAVTMAELRSEEQLANRT"
XX
SQ   Sequence 5059 BP; 1522 A; 1271 C; 1191 G; 1072 T; 3 other;
     cctcgaatcg ggcgttcttc aggcctataa atcgaaataa acaagtcaga aggggtcttt        60
     gggactctgc ctacatacca catccgcgga acagctgtgg tgccatcgtc gctggaccgg       120
     ccttaatttt ttggccaagg ccggctgggc tactggtgaa ggctgcggtg agggaaggga       180
     gttgcctctc tccttatttt tttcccgcct ctcttcttcg gctcctgcgt tggtgtgggt       240
     gagaaatttt atccactttc cctcaaaatt tttcactttc tgctacagca ggtcctcctc       300
     gttttcacac cgctacggac agctgatcga gccagtgttg ggaaacgaca gtaataaggg       360
     gagcccctag ccaatatcgg gcaggtggcg cctctgggaa acccgcaaat aaaaaccgtt       420
     cttagcggga tccaaattta aattcaaatt ggcaccaatt aaattccgaa ttaaaatcta       480
     aattttgccc cgcccctgag ccctaaatgg tcagtcctac tgcgtcgatg gaccagcatg       540
     atcgacaagg aagatttccc cttagcgact gcgcgagcga agatttaatt tttgcaaggc       600
     gtccgttaat cggaaattcc ccccctgcag cagttggatc aaacccagtg tcagttgcaa       660
     cgcgggctat tctaaacagc ccagatgtgt cggcaacagc gtcaagccct ccagtgaagt       720
     cgcacatcgc tgaactagat gaactaggct ctctagtatg gcagttagac cacacgttca       780
     acaacagaga cgataataaa aagccagtga ggcatataaa cctgagcacg aaacagtcta       840
     tagtsaaaat gaaagaactg tacgagtttc tctgccacag agttctagct ggagaattcc       900
     aaaaagtccc gcaaaggcaa gacggtgcca cacagatgac tccaaaggca aatggccgca       960
     acagagtcct cgcagcgaca aacactagtg actctcccaa acgtccaaga gagcattcgc      1020
     cggcccagcg caaaacaccg cctaaaaaaa agaaaaataa tgcgccagtc acaaagccat      1080
     ctacagcgac aagcccactg cgcactgatc gtatagacag gcatcacaac caagatgagt      1140
     ggcagaaagt cacaaacaaa aggagaaaca gggcggcggc tcaaaagcaa aggctgccaa      1200
     aacagaggcc agacgctatt ttgatagcaa acaaaggcaa cctatcatac agcgagatgc      1260
     tcaaattagt cacatgcagt gaaaacgaag ccctaaaatc gcttggggaa aatgtcaaga      1320
     aagcaagaag gacagccaag ggagaccttt tgcttgaaat gggaaaacca atgccggaaa      1380
     gtctaagcca aataagcgat gatattggtg ctgcattggg cagccagttt gcagcctctg      1440
     ctttgataag cgaaaccagg ctggatatca gagagcttga tggtgaaacc accaaagaag      1500
     akatagtagc agcgttcggg atcaggctca aggtgaagat tgacgtgacc gccattaaga      1560
     gtctgcgcaa atcttattca ggttgccaga gagctacagt aagcgtccca actacggcag      1620
     ctaacgacat ccttcaagct ggaacactaa aggttcgctg gaatgtctgc cccatacgcc      1680
     tagacaatac tccgagaagg tgcctaaaat gcctaaaata cggccatatc gcgtccaaat      1740
     gcaccagcga aaccgatcga actggcctct gcctaagatg tggcaaatcg ggtcacaaga      1800
     taaaagagtg caataatagc ccttcatgtt gcctctgtgt tgccagtgga aacgctgatt      1860
     atgcacacac ggcaggtagc cagaggtgcc ctcacgggcc gaaagggatg tctacaacaa      1920
     aacaataatg agatttattc aaataaatct caaccactgc gaggcagcac aagacttgct      1980
     gtcacagact gtcagagagc tcggcacaga cgttgctatt atcagcgagc cttataaaaa      2040
     ttttactacc acgacatggg cacaaaacaa ttcgggaaaa gccgcgatct gggcatgtgg      2100
     gaccacaccg tgccagataa aattccctgc atccttcaac ggttttgtta gagccaaaat      2160
     aagagagtac tggattttta gctgctatct acccccctca tatagcctcg gagaattctg      2220
     cggtgtaata gaagagctgt cggatcagat ccgatgccac aagccggcaa ttgttgctgg      2280
     ggatttcaat gcatgggcag cggaatgggg cagctcctcc accaatgcaa gaggccaagc      2340
     acttcttgaa gcattcgcgt caatcgactt ggcgctccta aacacaggca acggcttcac      2400
     attccaacgt ggcaacatag gatctataat tgatctaaca ttcgtcacca gtgcactctg      2460
     cacacatgca cggtgggtat tgagtcccca ttacacagct agcgaccaca atgcaattat      2520
     ctgcacaatt gataatcagc ggcggtcgga acggcagata acgagacccc aaatattcaa      2580
     ttcgaaaatg ttagatgtcc aagtcttcac tagaactctt gagcagcaca atatcgaggc      2640
     atatacagca gacgagctta acgcctggct aaccgacgcg tgcaacgcct gcatgccccg      2700
     gaaaaatgcc tgtcccaaga accacagacc agcatattgg tggaatgaag agattgccaa      2760
     actccgtaag ctgtgtcatc gatccagaag gagatcccag cgcactcggg gtagtgaaga      2820
     ctctgagtct taccgtctag aatttgaggc aaagcgcaga gagctcaaga tggctattcg      2880
     ccgtagcaaa aaggcttgtt tcgacgcact actcacagaa gcagcaaatt atgtatgggg      2940
     caggccatat aaaattgtta tgaagaggct taaatctttc cagcgcatag aaccaccttc      3000
     tagcatcgaa atggatgcaa tagtaaggga actgttcccc acccaggcac ctagcaattt      3060
     tgtcacagtt aactatgatg tagcaggcat accgccggtc acatcacaag aaatactaac      3120
     agctgtagga cgcattaaaa tcaattcctc ccctggcccc gactgtatcc cgaacgaggc      3180
     attaaagatt gctgccttcc agcaccctga aaagtttgca ttcgccttca ccaaatgtct      3240
     caacgatggc atattccccg acctatataa acagcagaac ctagtgctct tacctaaacc      3300
     aggaaaacaa atgggagagc cctctgccta cagacccatc tgcctactag actcgacggg      3360
     aaaactccta gaaagaatag tagtggacag gctagaccaa gccttgcagg ccaaccaagc      3420
     aatttccgaa aaccagtttg gttttcgcaa gggaagatct acactagatg ctattcggaa      3480
     agtggttaaa atagctcgaa acgcaaccgc cggcgataga tggaaaggcg gatcaaaaga      3540
     atactgccta atagccacac tagacgttaa aaatgccttc aactcggcaa gatggtcctg      3600
     catattggag gctctgcata actatagagt tccgccgtac ctgttgaagg tagttagcag      3660
     ctacctcaac aacagatggt tgcatgtgga cacctatgat ggaggaaaag attatagcat      3720
     taccggtgga gttccacagg gctctgtcat ggggccgcta ctctggaatg caatgtacaa      3780
     cggagtgcta aacctgaata tgcctaaagg agttgagacc attggctttg ccgacgacat      3840
     cgccttagtt tgtgtggcga aacatctaaa tgaagtggaa gctgtttgct cgaacgcgat      3900
     attccgagtt cagcagtggt tggcctcaat gggccttcac ttggccgaac ataaaactga      3960
     ggcagtgctc gtaagcagtc ggaagaaagt agagattgca acaattcagg ctggcaccgc      4020
     gcaaataacc agcaaaagct caataaagta ccttggcata cttatcgatt ccaggttaac      4080
     gttcaaagac cacctcaatg aatcagcaaa gaaagcgagg gctaccggcg ctgccttatc      4140
     gcgcctaatg tgcaacacaa agggtcccac acagagccgc agattgctgc tccacggggt      4200
     cacaaaggcc ataatgcttt acggcgctcc ggtctgggcc gaggccatgg ccacaaaatc      4260
     ctatgcacgg gacatggaat ccgtctatag actcagcgcg ctcagagtct gctccggttt      4320
     ccgcacgatc tctggaattg ctgctatggt gctagcaggc acaattccta tccgactcct      4380
     agcagacgag accaaacaac tkttcagcaa actaaaagac ccgagaatta cccaaatcga      4440
     aagggctgca atccgcaaga gggagcggag cataagtatt tctagatggc aggcgctgtg      4500
     ggacgagtct gaaaaaggca gatggactca ccgacttatc ccaaatctcg aaacatggct      4560
     taataggaga cacggcgaag tcaacttcaa cctgacacag ctactgagcg gacacggttg      4620
     ctttcggagt tacctttaca gatttcggca tgctgcaagc ccagcgtgcc catggtgcaa      4680
     caacggtgag gaagagactg ctgaacacat tctgttcagt tgtggccgct tcgacactca      4740
     cagaagaaat ctgcaagtgg tactcggggt gcaggcgtca gcaacaaatc tggtaccgct      4800
     aatcatactg cggaaggcca attgggatgc cttcaacaaa ttcgcagcgg tcaccatggc      4860
     cgaactgcgc agcgaagaac aactggcaaa cagaacctga taagaggatg tgcggtggag      4920
     gcaagatcgt gtgaagcaat acccccgctg gcagtcccac acgcttttcc ctctccgcaa      4980
     cttcatatat tcctaaatct tttgtaaatt cttctttcta tcctttctta aataaatgaa      5040
     ttaaaaaaaa aaaaaaaaa                                                   5059
//
ID   R1-4_DYa    repbase;    DNA;    INV; 5081 BP.
XX
AC   .
XX
DT   26-MAY-2011 (Rel. 17.09, Created)
DT   26-MAY-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5081
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1936-1936 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~97% identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           655..1770
FT                 /product="R1-4_DYa_1p"
FT                 /translation="MDGPAGGTAPDDVVDPFKRSARMSRSPSKGVGITEIT
FT                 ERAVMPVPAAVSVAQAVPQTLTSTPSIGGATAAEDLAPSTSLMNRKKISDL
FT                 ISVPSQYAPARTPPVSPSRPLDLSAYKNEDLSSILGMMNSKIAVLLSAFET
FT                 QRHVTRETKGVISELAALNARAIQLQEAKAKEAPAKSTATQTEAQPKPASA
FT                 PAASKRSAPAKPPQKKLLVSKDAILQTHKVNEPVPPSFASVAKEGNKNSEW
FT                 TKVAPKRLRKKPEAIIIKKTGEASYTDMLRKLKADPCLSELGSHVKKIRRT
FT                 QQGELLLEVEGKAAASMSEYRGAIEESLREMAAVRTGARRMALTCSGMDEA
FT                 TTATAAQTGITRQVALHALPLKRAQQKEP"
FT   CDS           1786..4380
FT                 /product="R1-4_DYa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MINILQLNVNHCAAAQSLLSQTAIERNADVMLLSEPY
FT                 VPGVENAEALFDSTRKAAVICCRNLYIEDQESVPMRGIAYAKVKGVHLYSC
FT                 YAPPSDSPDLFEDFLDNLIHHARGRKPAVIAGDFNAWAIEWGSRTSNLRGR
FT                 AVIDAMNQLDLVLLNDGGKPTFNNDRGTSFIDVTFVNRSLASTANWMVQED
FT                 VTLSDHALITFSARSSCITQRQARSTLGQAWDIRKLDKDMLAFSIEQMEQT
FT                 NGHAESMVASLMKMLEAACDAAMPRKKKNGKRKPPVYWWNGSLNHLRSECF
FT                 RARRQAQRARGLPQHAELHEAFRSKRADLRNGIAAAKANAFKELLASVDED
FT                 PWGIAYKMVSNKLKAAEGGTPQDPVLLSTIVQELFPNQDTLWQPAQEIPAP
FT                 DFPGVTASEVIEAAKRIKPNKAPGLDGIPGVVVMAAANARPEIFRDTFQQC
FT                 LIDGVFPSRWKNMKLVLLPKGKGPTNAAGSFRPLCLLDIVGKLFERIIYAR
FT                 IEVFTESPDGLQRHQYGFRKGKSTLDALTALRDLAKSALDGDRWLGGTKKY
FT                 CAIITLDVKNAFNTAGWPKILGAMRNMGIPRYLRIIIGSYFRDRILWYDTD
FT                 AGPRNHHVSAGVPQGSVLGPILWNIMYDGLLSISKPTGVELLCFADDVAVA
FT                 AVAKTIPELQDRSNAAISTTISWLENAGLSIAAHKSEVVLLSSRKAVESIR
FT                 VSVKDAQIESAGFLKYLGVLVDHRLSFKEHARYASRKAAMTAAALARLMPN
FT                 IGGPRMPARRLLVAVAKSSLLYAAPIWRSVTNKVTYLDNARAVSRTLALRL
FT                 IRGFRTISEDAAHVLAGIPPIDLEIEAQYLKREGISGEEITDWLHGVWQTR
FT                 WHDSHKGDGPTN"
XX
SQ   Sequence 5081 BP; 1394 A; 1301 C; 1371 G; 1014 T; 1 other;
     ttgcatttgc taaaatcgga cgtgtttctg atacgctgcg cggaaaaacc tattatcacg        60
     aagacggctt ggcgagtttg gcggaataac tgcccaaagc cactcggtgc taatgtgcat       120
     catttcggcg cgattaaaag tgaaaaaacg cgagcgattg gtaaattgcc tatatttatg       180
     actttgcaat tcggtgcagc tgagaacaac agctgacagc gctgccaact tacgtcggca       240
     agtgatcgga gcttagtggc gttgccagac catcggcact gccagggctg ctccaacagc       300
     cgaatcgtgt accggtacct aaacaataat attcaaacaa tatctaattt gaatttmgtt       360
     tagaagtgga caattgctaa aaattgcgaa aaaccaacaa aatatatatt tatatataaa       420
     tttgtgtgga gttgaccaat atttagcaag ggaatcggca taaaggtcgc ggtcagacca       480
     atcatcaacc tctcaccatc tcggtgccca agtagaggct ctggtgtccg agaagaggcg       540
     gaataacctc catcagccaa cgcctaggag aaatccgtgg cctacgtggg acccctgcta       600
     aatttggtgc tccacgttcg caaagggtaa actagggttg acacccgtca attaatggac       660
     ggtccagcgg ggggcactgc ccccgacgac gtggtggacc cattcaaacg aagcgccaga       720
     atgtccaggt ccccttccaa aggagtggga atcacggaga taacggagcg agctgtaatg       780
     ccagttccag cggctgtgag cgtagcgcaa gccgtccctc agacgcttac gtcaacaccc       840
     agcatcggtg gagctactgc agcagaggac ttggccccct caacatccct gatgaatagg       900
     aagaagatct ccgacctcat cagtgtgccg tcccaatatg caccagcaag aacaccgcct       960
     gtttcgccgt ctaggccact agacctgtcg gcctacaaaa acgaggattt gagcagcatc      1020
     ctgggcatga tgaactcgaa aatagcggta ctgctatcag cttttgagac gcagcgccac      1080
     gttacccggg aaaccaaggg tgtgatctcg gagctggcag ctctaaatgc cagagctata      1140
     cagctgcagg aggccaaagc caaggaggcc cccgcaaaga gtacggcaac ccagacggaa      1200
     gcgcaaccca aacctgcgag cgccccggca gccagcaaaa ggagcgcccc ggcgaagcct      1260
     ccccagaaga agcttctggt tagcaaggac gcgattttgc agacgcataa ggtgaacgag      1320
     cctgttccgc ccagctttgc gtccgttgcc aaagagggta acaaaaattc ggagtggacc      1380
     aaggtggcac ctaagcgact acggaaaaaa ccggaggcca tcataattaa gaagactgga      1440
     gaagcctcgt acacggacat gctccgtaaa cttaaagcag acccgtgcct gtcagaactg      1500
     ggcagccacg ttaaaaaaat caggaggacc caacaaggag agctgttgct cgaagtggag      1560
     gggaaagctg ctgcaagcat gtccgaatac aggggagcta tcgaagaatc ccttcgggaa      1620
     atggctgcgg tccgcacggg cgcgcggaga atggcgttaa cctgcagtgg catggatgag      1680
     gcgacgactg caacggccgc acagacagga atcacccgac aggtagcttt acatgcccta      1740
     cctttaaagc gagcacaaca aaaggagcct taagacgccg catccatgat taacatacta      1800
     cagcttaatg ttaatcactg cgcagctgca cagagccttc tgtcccaaac agcgatagag      1860
     cgcaatgctg acgtcatgct actaagtgaa ccgtacgtcc ctggtgtgga aaatgcagaa      1920
     gctcttttcg actctactcg taaggcggca gtcatatgct gcagaaacct ctacatagag      1980
     gaccaggaaa gtgtgccaat gcgcggcatt gcgtacgcta aagtgaaggg tgtccactta      2040
     tatagctgct atgccccgcc tagtgacagc ccggaccttt tcgaggactt tttagacaac      2100
     ctaatacacc acgctagagg gcgcaagccg gcagtcattg caggtgactt caacgcctgg      2160
     gcaatagaat ggggaagccg gacatctaac ctccgaggta gggccgttat cgatgccatg      2220
     aaccagctgg atctggtgct gctgaacgat ggtggcaagc ccacgtttaa caacgacaga      2280
     ggtacatcat tcatcgacgt cacttttgtt aaccgaagtc tagcctccac tgcaaattgg      2340
     atggttcagg aggacgtaac tctgagcgat catgccctaa tcacattcag cgcccgctcg      2400
     tcgtgcatca cacaacgaca ggcaaggagc acccttgggc aagcatggga catcagaaag      2460
     ctggacaagg acatgctggc ctttagcatc gagcaaatgg agcaaacaaa tgggcatgcg      2520
     gaatccatgg tggcgtcgct catgaagatg ctggaagctg catgcgatgc agcgatgccg      2580
     cgaaagaaga aaaatggcaa acgcaaacct ccggtctact ggtggaacgg ctccctcaac      2640
     cacctacgct cggaatgctt cagggcaagg agacaggcgc aacgagccag aggacttcct      2700
     cagcacgcgg aacttcacga ggcttttaga tcgaaacgtg cagatcttag aaacggcata      2760
     gctgctgcga aagcaaatgc ttttaaagaa ttgctggcaa gtgtcgacga agacccctgg      2820
     ggtatcgcct acaaaatggt tagcaacaag ctgaaagccg ctgaaggtgg tactccacag      2880
     gacccagtcc tactgtcaac catcgtgcaa gagctatttc caaatcagga taccctatgg      2940
     caacccgcgc aagaaatccc tgccccggat ttcccgggtg tcactgcaag tgaggtcatc      3000
     gaagcggcaa aaaggataaa gcccaacaaa gcccctggtc tcgatggcat cccaggtgtc      3060
     gtagttatgg ctgccgcaaa tgctaggcca gaaatcttca gggacacctt ccaacagtgc      3120
     ctgattgatg gtgtcttccc atcccgctgg aagaacatga agctggtact gctgccgaaa      3180
     ggaaagggtc caaccaacgc tgcaggcagt ttccgcccac tttgcctgct ggacatcgtg      3240
     ggaaagctct tcgaacgcat catatacgca cgcattgagg tgttcactga gagccccgat      3300
     ggcctacaaa ggcaccagta tggtttccgg aaaggtaaaa gcaccctcga cgctctcact      3360
     gccttaagag atctggccaa gtccgccctt gatggagacc gatggctagg tggcaccaag      3420
     aagtattgcg ccatcatcac gcttgatgta aaaaatgcgt ttaacacggc tggatggcca      3480
     aaaatcctcg gggccatgcg caacatgggt attcctcgat acctcaggat catcattggc      3540
     agctacttca gggaccgtat actttggtac gatactgacg ccgggccaag aaatcaccac      3600
     gtctccgcag gtgtcccaca agggtcggtt cttggaccaa tcctgtggaa cataatgtac      3660
     gacgggttat tgtccattag caagcccaca ggagtggagc tactctgctt tgcagacgac      3720
     gtggcagtag cagcggttgc caaaacaata ccggagttac aggacaggag caatgcagcg      3780
     attagcacaa ctattagctg gctggaaaac gccggtctaa gtatcgctgc gcacaagtcc      3840
     gaagtggtgt tgttgagcag cagaaaggcc gtcgagagta tacgggtctc ggtcaaagac      3900
     gcccaaatag agtcagctgg attccttaag tacctgggag ttcttgtaga ccacagactg      3960
     tcattcaagg agcatgcgag atacgccagc aggaaggcag cgatgacagc agcagcactg      4020
     gcaagactca tgccaaatat aggcggaccc aggatgccgg ccagaaggct gctcgtggcg      4080
     gtcgcgaaat cttcgcttct atacgcagcc cccatctgga ggagtgtcac aaataaagtg      4140
     acgtacttgg acaacgcgcg tgcagtatca cggactctgg cccttagact gatcagagga      4200
     ttcagaacaa tctcggaaga tgcggcccat gttcttgcgg gcatcccccc gatcgatcta      4260
     gagatagagg ctcaatacct aaagcgagaa ggtatttccg gagaagagat cacagactgg      4320
     ctgcatggag tgtggcagac taggtggcat gattcgcaca agggagatgg acctaccaac      4380
     tgatcccaga tctagttgag tgggcaggat gcgaacacaa ggaggtggac taccacttga      4440
     cgcaatttct caccgatcac ggctgcttcc ggggttacct cttcaggttt cgccatgtgg      4500
     actcagccct gtgcctgttc tgcagcgact cagccgaaac agcggaacat atcctgctgc      4560
     actgtgtaag gttccgtaca gagagagaga tactggagac tcttgctgga tctccgctca      4620
     gcccgaggaa cttaatgcgc acaatgctgg cggacaaaac cgtgtgggta agggcccatg      4680
     gcattatcat cggcatgatg aaacgagttc gcatcgatga gacggccagc agacccgttg      4740
     gataaagagc acccccgtgt ggtggcgggg caagaatacc acctcagcgg gctcggcttg      4800
     tcgtaaaagg cgactaaaga gttagcgaag gagcgtttcg cagcaacgca acaagagagg      4860
     ggttgcgatc tggcaccaca tcctgctcac cgaagtaata ccttgactgg aagtcccggt      4920
     gagcgtagca aggactggag agcgttcgga ggtttttgtt tagtacgtag gcgtaactct      4980
     acttggagag ttatgaatcg tgcatgccat tcacggacgg tggatggtat cttttgaaga      5040
     ttttattttc ctgccgtatt tgtaataaaa aaaaaaaaaa a                          5081
//
ID   R1-4_PPo    repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-250
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3135-3135 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 250 BP; 77 A; 54 C; 64 G; 55 T; 0 other;
     agccaatata ttggactcaa ggagctgaag cgcagattgc aagcaggaaa agcataattg        60
     ctgagaccgc ccccacgatg taatacttga cggtagttcc gtgggggcac aaaaagtcca       120
     tagagagggt tgtttagtcg gtaacgggac tcaggttagg tgaatactaa tgagcctgag       180
     cccgacacac caggcatgta gctcccatgt ctgacggtgc tataaagcat ttttccctct       240
     ataaaaaaaa                                                              250
//
ID   R1-5B_DK    repbase;    DNA;    INV; 5687 BP.
XX
AC   .
XX
DT   21-JUN-2012 (Rel. 17.07, Created)
DT   21-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DK;
KW   R1-5B_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5687
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1361-1361 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. The consensus is ~85% identical to
CC   that of R1-5_DK.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1026..2528
FT                 /product="R1-5B_DK_1p"
FT                 /translation="MAFRRSSRVLRSPILPASKAPVPTAGENADSLTPKRT
FT                 RDAASPAGSQRETPPKRCRESQCLKNIAELGKILDDVLNDINNKQVRHITL
FT                 VMKTKLARVKDLQADIGEWLNSARKPEETDRPEPAVAFHNCSQGGNNTEST
FT                 QRRDAAQQTPKVWSKDGATQTEARRAPTTTEKPQATAANTSAKNQRRAPTP
FT                 AEAAKQGKTSARGTPAASAPKPRAPNPPQPIGPATEGPEAEGGAWRTFTRK
FT                 KRRKKXEAPHRSRPDAVIIAAKGKTYSEILAMVTRRDDSQLAGLGNCVKKV
FT                 RRTTNGNLLLEMAKNSAESAASMRTSIAQVLGDTAEVRAMSEDSKVSVLEI
FT                 RELDALTKEPEIVAAIAEQFSLDGAKVKVRSLRPGYAESQTAVISLPCPLA
FT                 KAVLKRGSLRIGWTSCAIRERTGPPRCYRCLEAGHLASNCRSATGRSGCCI
FT                 RCGERGHKAAKCPNEPKCFLCAASGKKETRHQAGSKSCPSRSSSSSGAGPR
FT                 NAPCS"
FT   CDS           2522..5503
FT                 /product="R1-5B_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRAAHDLLMQTVRDLDADVAVLSEPYK
FT                 AASTHGWATDRTGKAALWMCGREPAHMSDVRSADGFVRGRVGGVWVYSCYL
FT                 APSLTLEAFSSIIDELSDDIRGRSNTLVGGDFNAWAQDWGSPSTNARGRII
FT                 LEAFASLDIALLNEGTQQTFNRAGAGSVIDLTYASSALACLARWRISEIYT
FT                 ASDHEAILVSLGENPPRRTVPPSANKAYRQDTLNAQAFSSALAGLATDETD
FT                 SANDAALKLAAAVERACNASMQKRKSFRKHHAPVYWWSDDIANLRSSCLRA
FT                 RRKVQRARGSPNLPARSEAYRIARAALKKAIKSSKRECFLKLCDDVEKDPW
FT                 GGAYQKVVKRVSAGSKAPTDPEALEGIVRVLFPTGQPLNFHVSSESMEICP
FT                 VSEQEILVSARTLKNKKAPGPDSIPNRATKLLLTLHAKAIADMFNKCLAEG
FT                 XFPERWKRQKLLLLPKPGKPAGEASSYRPICLLDTIGKVFEKTIVSRLEAA
FT                 IERAGGLAPNQFGFRKRRSTLDAIETVTNLAANAIAGARWKKGAKEYCLVV
FT                 TLDIRNAFNSADWRRTLEALEAFGIPGYLLRIVRSYLSERSLIVDTSQGTR
FT                 THEVSAGVPQGSVLGPLLWNTMYNGVLNLPLSSNTTIVGFADDVALVVVAK
FT                 ELADAETAANSAIRAVESWLAVAGLELASHKTEAVLISSRKRVETAEIRVG
FT                 GLPITSQRALRYLGVILDTRLCFREHLEYVHKKASETARSLSRILLNTRGP
FT                 KQCKRKLLTSVVTSQLLYAAPAWAEAVKVRSYVRGVEGTYRLCALRVACAF
FT                 RTVSDDAALVIAGQVPICELVREAQEARLSREPGNSSARREARSSARRRSI
FT                 ARWQSRWDSSTKGRWTHRLIPDVQSWVDRKHGEVDFYLTQALSGHGCFRSY
FT                 LKRFGHDTEDHCPECGTGVEENAHHVLFECHRFHHERLALEEVVGAAIGAD
FT                 NLVPTMLASQKAWDATATFVASVMKTLRTLETERRMRAE"
XX
SQ   Sequence 5687 BP; 1356 A; 1677 C; 1711 G; 918 T; 25 other;
     ttgagmgggg agagtggtga gagcattccc tacagttttt tgccmcattg ttgttgcctc        60
     ctkcggtgca atgttcctcc cgcggtgaat gtggctgccc ccgcagctaw wtgccagtca       120
     ckccagctga tkgwaagatc agctgtgatc cagtgttgkg wagcaatcgg ttccgccccg       180
     gtctagcaac tccccgcctc caccaggtgg cgctgagcgg atctgacctg cagctggcgc       240
     tgswgmgcca accgtckmtg ctgacgwwag ctgcctgctg cagcacgcac acgtcccaca       300
     ccaatccagg aggtagcata cctttcaggg ctgctgctcc tgatccttgg tttgaggaag       360
     tgggatcggc acgaaacccg tgaccaaggc ccgcacaggg gatcaaatgg tggtaaaggt       420
     caaggagctg accaacagac aacccctccg ctctgcggct cacctttaaa atcggggctc       480
     tggcgaccga gcaggggcgg tataaccccc acctgctaag tctcggggaa acccctgacc       540
     cccgagggac cccacaagtg cacacgcctt ccctccacac tcctccacgt agcgtttgtc       600
     ccataatggg cggctacgtg atctgcgtct gcgccacatt ggccggcgga agaacaaacc       660
     tggcagcagg cactagctgc tatcaaatcc cccaaaccca ggcagcgtct gacccacatt       720
     gggcggctgc ctggtctgcg tctgagccac actggccggc agttaaacac acctggcagg       780
     aggtataaaa tgcagccctt gcattgggcc aaaatgcaaa tggaatttgg aatgtcttcg       840
     caaaacggaa tactccaggt ggcaaccaca cacgtggaaa tccacccgcg ggagaccccg       900
     cggccagggc aaggattctg gaggccctaa aaaacattcc cccaagcact gacgtggcgg       960
     tggctgactt ggccgccacg gtagttaata cgccaagcca tgacaatgag agtaacgacg      1020
     gtcccatggc cttcagaagg agcagcaggg ttttaagatc cccgatcctc ccagcgagca      1080
     aggctccggt accgacagca ggagagaatg cggactccct aactcccaaa aggacacggg      1140
     acgccgccag cccagcaggc tctcagcgcg agacgcctcc taagagatgc agggaatccc      1200
     agtgtctcaa aaacatcgcg gagctgggca agatcctgga tgatgtcctc aacgacatca      1260
     acaacaagca ggtccggcac ataaccttgg ttatgaagac caagctggcg agggtgaaag      1320
     acctgcaagc cgacataggc gagtggctca actccgctcg gaaacccgag gagacggatc      1380
     gacccgaacc tgcagtagca ttccacaatt gctctcaggg cgggaacaac acagagagca      1440
     cccagagacg ggacgcagca cagcagaccc ccaaggtctg gagcaaggac ggcgcaacgc      1500
     agacggaggc gcggcgagcc ccgaccacca cagagaaacc gcaagcaacg gcggccaaca      1560
     cgagcgcgaa gaaccagcgg cgcgccccca cgccggctga agctgctaag caggggaaaa      1620
     cctccgctag agggactccc gcggccagcg cgcccaaacc cagggcaccc aacccgccgc      1680
     agccaatcgg tccagcgact gaaggcccag aagccgaggg aggcgcctgg agaaccttca      1740
     cgaggaaaaa gcggcgcaag aaaancgagg ctcctcatcg gtcccgcccg gacgcagtca      1800
     tcatagctgc gaaagggaaa acatacagtg aaatcctggc catggtcacc agaagggacg      1860
     acagccagct tgcaggcctg ggtaactgcg tcaaaaaggt tagacgaacc acaaacggaa      1920
     accttctgct agagatggcg aagaatagcg ctgagagcgc agcgtcaatg cgaacgagca      1980
     tagcgcaggt gcttggcgac acggcggagg ttcgggcgat gtcagaggac tcaaaggtct      2040
     cggtactcga gatccgagag ctggacgccc taaccaagga gcccgagatt gtggctgcga      2100
     tcgcggagca attcagcctg gatggggcca aggtcaaggt gcggagcctc cgccctggct      2160
     atgccgagtc ccagacggca gtaattagcc tcccgtgccc cctggcmaag gcggtgctca      2220
     agagaggttc tctgcgcata ggctggactt cctgcgcgat cagggagagg acgggccccc      2280
     caagatgcta ccggtgtctc gaggctggcc acctggcctc aaactgcaga agcgcgactg      2340
     gccggagtgg gtgctgcata agatgcgggg agaggggaca caaagccgct aagtgcccca      2400
     acgagccgaa atgcttcctt tgcgctgctt ccgggaagaa ggagacgagg caccaggcag      2460
     gcagcaaaag ctgcccgtcc aggagctcca gcagcagtgg cgccggcccc cgtaacgcgc      2520
     catgcagttg attcagctga acctgaatca ctgcagggca gcgcatgatc tgctgatgca      2580
     gacagtgcgc gacctggacg cggatgtggc ggtgctcagc gagccataca aggctgcaag      2640
     cacacatggt tgggccacgg accggactgg caaggctgcg ctgtggatgt gtgggcggga      2700
     acccgctcac atgtccgacg tcagatcggc ggatggcttc gttcgcggta gagtaggcgg      2760
     ggtgtgggtg tacagctgct acctggcacc gagcctcacc ctggaggcct tcagcagcat      2820
     catcgacgag ctcagcgatg acatccgggg acggagcaac acactagtgg gcggcgactt      2880
     caacgcatgg gctcaggatt gggggtcgcc ctcaaccaac gccagaggcc gcatcatcct      2940
     ggaggccttc gcctccctgg atattgctct gctcaacgag ggtacccagc aaaccttcaa      3000
     cagagcggga gcagggtccg ttatagacct cacgtacgct agcagtgcac tagcctgcct      3060
     agccaggtgg aggatcagcg agatctatac agccagcgat catgaggcca tcctcgtctc      3120
     cctcggcgag aacccacctc gcagaacggt cccgcccagc gcaaataagg cgtaccggca      3180
     ggacacgctc aacgcccaag cgttctcgag cgccttagcg ggcctagcca cagacgagac      3240
     ggacagcgct aacgatgctg cgctcaaact ggcggccgcg gtcgagcgtg catgcaatgc      3300
     aagtatgcag aaacggaaat ctttccggaa gcatcacgca ccggtgtact ggtggagcga      3360
     tgacatcgca aacctccgct cctcttgcct ccgagccagg aggaaagtcc agagagcgcg      3420
     cggctctccg aacttaccag cccgcagtga ggcttacagg atcgcaaggg cggccctaaa      3480
     gaaggcgata aagtccagta agagagagtg ctttcttaag ttatgcgacg acgtcgagaa      3540
     ggacccatgg ggcggggcct accagaaagt tgtaaagcga gtgagcgctg gcagcaaggc      3600
     gccaactgac cctgaggctc tcgaaggcat agtccgggtg ctatttccga ctgggcaacc      3660
     gctcaacttc catgtgagca gcgagtccat ggagatatgc ccggtctcgg agcaggagat      3720
     cttagtgtca gcgaggacac tcaaaaacaa gaaggcgcca ggtcctgatt cgatccctaa      3780
     cagggcgacc aaactgctgc tcacactgca cgccaaagcg atcgccgata tgttcaacaa      3840
     gtgcctggcg gaaggcwcgt tcccagagag atggaagcgc cagaagctcc ttcttctccc      3900
     gaaaccgggg aagccagcgg gcgaggcgtc ktcgtacaga cccatctgtc tgctggatac      3960
     gattgggaaa gtatttgaga agacgattgt ttcgaggctg gaggcagcga tagagcgcgc      4020
     tggcgggctc gcgccaaacc agttcggctt ccggaagagg agatcgaccc tggatgccat      4080
     cgaaacggtc acaaacctgg ccgcgaacgc catcgctggc gcwagatgga aaaaaggcgc      4140
     caaggagtac tgtctggtgg ttactctaga catccggaac gccttcaact ctgcggactg      4200
     gaggcggaca ctggaggctc tggaagcctt cggcatcccg ggctacctgc tgaggatagt      4260
     ccgcagctac ctcagcgaga ggagtctcat cgtggacacg tcccagggta ccagaacgca      4320
     cgaggtctca gccggagtcc cgcagggctc cgttctggga ccgctgctct ggaacacgat      4380
     gtataacggg gtgctaaacc tcccgttatc ctcgaacacc actatcgtcg gctttgccga      4440
     cgacgtggcg ctggtggtag tggctaagga gctggcagac gcggagacgg cggcaaatag      4500
     tgcgatccgt gcggtcgagt cctggcttgc agtcgccggc ctcgaactgg cctcgcacaa      4560
     gaccgaagca gtcctgatct ccagcaggaa gcgcgtggaa acggcggaga tccgggtagg      4620
     tggacttcca atcacctccc agcgcgcact gaggtacctg ggcgtcatcc tggacacacg      4680
     cctctgcttc agagaacacc tagagtatgt tcacaaaaag gccagcgaaa ccgcaaggtc      4740
     cctctccagg atcctgctga acaccagggg gcccaagcag tgcaagagga agctgctcac      4800
     gagcgtcgtc acgtcgcaac tcctctatgc agccccagcc tgggcggagg ctgtgaaagt      4860
     caggagctat gtgaggggtg tagaaggaac ctaccgccta tgcgctctaa gagtagcgtg      4920
     cgccttcagg actgtctccg acgacgcggc cctagtcata gcggggcagg tgccgatatg      4980
     cgagctggtt cgagaagctc aggaagcccg cctctcacgc gagccgggaa actcttcggc      5040
     gaggcgcgag gccaggagca gcgccaggcg caggagcatc gcccggtggc agtccaggtg      5100
     ggacagttcc acaaagggcc gttggactca ccgcttgatt ccggacgtcc aaagctgggt      5160
     cgaccgaaag cacggcgagg tagacttcta cctgacacag gcactcagtg gacacggttg      5220
     ctttcgaagc tacctcaaam gattcggcca cgacacagag gaccactgcc ctgaatgcgg      5280
     gaccggagtg gaagagaacg cgcaccacgt tctcttcgaa tgccatcgat ttcaccacga      5340
     gcggctagca ctggaggaag tcgtgggcgc tgccatcgga gctgacaacc tggtccccac      5400
     catgcttgcc agccagaagg cctgggacgc gactgccact ttcgtggcaa gcgtcatgaa      5460
     aacgctgagg accctggaga cggagagaag gatgcgtgcg gagtaggtgg cccgtacctc      5520
     gcgcgaagca atgcctagcg gcggtaccgc gcgaccatgg ccmtctacac cgtaaacaaa      5580
     gcagccttca amccaacaac ccgcagtctt cgttcttttt tgttgttatt tgtatattac      5640
     taagatttaa tttgttaata aatggaatat aaaaaaaaaa aaaaaaa                    5687
//
ID   R1-5_BM     repbase;    DNA;    INV; 5102 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5102
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1051-1051 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           666..1730
FT                 /product="R1-5_BM_1p"
FT                 /translation="MDEAWTTVVRRGRRKAQAAPDPRPVPAAAAPQAMGRA
FT                 AAGGKRKGRKARKPRAPRSAAVVLELLPAAKEKGLTYGEVMARARGSVDVD
FT                 AIGVEGGXRVRHTANGARLLECPGADXGAAADRLAARLREILPDPEVVRID
FT                 RPVKMAEVKVTGLDECATKEEVAAAIASQGNCALAQVKVGELRSSYSGAFT
FT                 AWARCPVQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCF
FT                 GTGHGLARCPSAVDRSGLCFRCGQPGHKAASCTAAAPHCVLCDAAKRRADH
FT                 RAGGPACRSAPSSTKRRRGGKKKKKKAEEEPAAREAAGRSVPAAAVEPQGG
FT                 TEDEGAMDVTPQ"
FT   CDS           1733..5101
FT                 /product="R1-5_BM_2p"
FT                 /translation="MDHVHRFLQANVNHSARAQDLLVHTMAEWFIDVAIVA
FT                 EPYFVPPDREDSWAGDVDGSVAIVMRQSAALPPLGMVARGSGYVVVRVDET
FT                 VVIGVYFSPNRSLAEFERFLGGLEALVHRFESRPVILAGDLNAKCTAWGSP
FT                 RTDSRGEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRV
FT                 RGWRVLEGAETLSDHRFVRFELSVSTSLNAPAEDARGEEELPRSAPRSFPR
FT                 WALKRLNKVLAVEAATVAAWAPMPARLVDVESEADWFRGTMRRVCDAAMPR
FT                 VGGRAPRGGAYWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVAARL
FT                 HADCRQKQEALRRAIGEAKSQSMKTLLETLDQDPWGRPYQTVRKKLRPWAL
FT                 PVTERLQPQQLREIVSGLFPRMERDFEPPSMGAPPRGDVSGDAPAEVVPPS
FT                 ISEEEIRAAVSRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLFEACLES
FT                 GRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVVAARIVQ
FT                 HLTGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVGRGGVALAVSLDIA
FT                 DAFNTLSLAEFERFLGGLEALVHRFESRPVILAGDLNAKCTAWGSPRTDSR
FT                 GEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRVRGWRV
FT                 LEGAETLSDHRFVRFELSVSTSLNAPAEDARGEEELPRSAPRSFPRWALKR
FT                 LNKVLAVEAATVAAWAPMPARLVDVESEAEWFRGTMRRVCDAAMPRVGGRA
FT                 PRGGAYWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVAARLHADCR
FT                 QKQEALRRAIGEAKSQSMETLPGLSVVCYADDTLVVARGRDLRESARLSCA
FT                 GVAFVVGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEAT
FT                 GLRYLGLVLDGRWSFRAHFERLGPRLMAAAGSLSRLLPNVGGPDAVVRRLY
FT                 TGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAAC
FT                 VLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLE
FT                 AWSRRLADPAYGRRT"
XX
SQ   Sequence 5102 BP; 727 A; 1654 C; 1915 G; 789 T; 17 other;
     cgtacgtgcg ggccctgaag tgcgtggccg ccgccgtgga ganacatctg gaggctttcc        60
     tncagcgcac aagcacggag gaagtagccg gcctgcggtc gcaactggag cggctgcagg       120
     ctcctagaaa acgcggagct ncgggcggag agcgtgcggg cgcgggagga gntggccgat       180
     atgcgtgcgg ccctcgacgg ngtcgtggga cgccagggca gctcggcnnc tccgccaccc       240
     ccgcccccac gcaggagaca gcggaaaagg acaaggagat cgaggagctg aagaggcgac       300
     tcgcgatcct ggaggcccgc gcctccaagg ttgagcgcgc gaggccaccg ctggcgcacg       360
     agcgccccgc gcctgcgcca tcgtcgcgcg gaaccgcggc tgcaccggcg cccgcgaagg       420
     ccgcagcgac caaagtgggt gcggcacccg cgacgcgcgc gtcggccaac ttggccgcac       480
     cggtcaagtc cgctggcngg cgagcgcncg ctcagcccgc gaggccgccg gccgccgctc       540
     ctgccccgcc ccagcctgcg aaggcggggc ctggcaggag ccgcgcnaag cagaagaggg       600
     gcgtgaacgc cgccgagccg gcgcagaccc cccagccccg tccgctacct cccgccccgt       660
     ccaacatgga cgaggcctgg acgacggtgg tgaggcgggg tcgaaggaag gcgcaagccg       720
     cgcctgaccc ccggcccgtc cctgcggccg ccgctcccca ggcnatgggt cgagcggcgg       780
     ctgggggaaa gaggaaaggg cggaaggcaa ggaaaccgcg cgccccgcgg tcggcggcag       840
     tcgtattgga gctgctgccg gctgccaagg aaaagggcct cacctacggg gaggtgatgg       900
     cccgggcgcg cggtagcgtc gacgtggacg ccataggcgt ggagggtggc ntccgagtcc       960
     ggcacacggc caacggggct cggctgctgg agtgtcccgg tgccgacncc ggcgcggccg      1020
     cggacagact ggcggcccgg ctccgcgaaa tcctgccgga cccggaagtg gtgcgtatcg      1080
     acaggcccgt caagatggcg gaagtcaaag tgacgggcct ggatgaatgc gccactaagg      1140
     aggaagtggc cgccgccatt gcgtcgcagg gcaactgcgc cctcgcgcag gtgaaggtgg      1200
     gagagctgcg gagctcttac tctggagcct tcaccgcgtg ggcgcgttgc cccgtgcagg      1260
     cggccaccct cctggccacg cctccacaag gtcggcccgc cgactcgccg gggaggctgc      1320
     gcgtgggctg ggtgatagcc cacgtgcagc tgcaggaggc acgcccctgg cgatgcctcc      1380
     ggtgcttcgg caccgggcac ggcctcgcca ggtgcccgtc ggctgtggac cgcagcggac      1440
     tttgcttccg ctgcggccag cccggacaca aggcggcctc ctgcaccgcc gccgcgccgc      1500
     actgcgtgtt gtgcgacgcg gcgaagcggc gggccgatca tcgggccggg ggcccggcct      1560
     gtcgttccgc cccctcctcc acaaagagga ggcgtggcgg gaaaaaaaag aagaaaaaag      1620
     cagaggaaga gccggctgcg cgtgaagcag ccggccggtc agttcccgcc gcggccgtcg      1680
     agccgcaagg cgggacggaa gacgagggag cgatggacgt gacacctcaa taatggatca      1740
     cgtccatcgc ttcctccaag cgaacgtgaa ccactccgcc agggcgcagg atctcctcgt      1800
     ccacaccatg gcggagtggt tcatcgacgt cgcgatcgtc gcggagccat acttcgtacc      1860
     tcccgaccgg gaggattcct gggccggaga tgtcgatggc tccgtggcga tcgtgatgcg      1920
     acagtcggcg gcgttacccc cccttggaat ggtggccagg ggatccgggt acgtcgtagt      1980
     tagggtcgac gaaaccgtcg tgatcggggt gtacttctct ccgaacagga gtctcgccga      2040
     gttcgagcgg ttcctgggcg ggctcgaggc gttggttcat cgcttcgagt ctcgcccggt      2100
     gatactggcg ggggacctca acgctaaatg tacggcgtgg ggntcccccc gcacggactc      2160
     gcgcggcgag ttcctgtcgg agtgggcttt cgcgaccggc ctctgtcttc tgaacagagg      2220
     ttcggtcgcg acctgcgtgc ggtggaacgg ggaatcacac gtggacgtgt cgttcgcgtc      2280
     tccgtccgcc gcgcgccgcg tccgtggctg gcgtgttctc gagggggcgg agacgctctc      2340
     ggaccatcgg ttcgtccgat tcgagctctc cgtttccacc tcgttgaacg cgccggccga      2400
     agacgcccgc ggcgaggagg agctcccgcg tagtgctccc cgatcattcc cgcgatgggc      2460
     actgaagcgc ctgaataagg tgctcgcggt ggaggcggcc acagtggccg cgtgggcgcc      2520
     gatgcccgcg cgtctagtgg acgtggagtc ggaggccgac tggttccggg gtacgatgcg      2580
     tcgcgtctgc gatgctgcga tgccccgggt cggcggtcgc gctccgcgtg gcggtgcgta      2640
     ttggtggacg cccgagatcg cgctcctccg agaggagtgc gtgcgggcgc gccgccgaag      2700
     cgcccgccac cgccgtcgcc gccttcgcga tgcggacttc gcggaggtgg cggcccgcct      2760
     gcacgccgac tgccgtcaga agcaggaggc gctgcggcgg gccatcggcg aggccaagtc      2820
     tcagagcatg aagacgctcc tggagacgct cgatcaggat ccctgggggc gcccgtacca      2880
     gacggtccgc aagaaattgc ggccgtgggc gctcccggtg acggagcgtc tccagcctca      2940
     gcagctgcgg gagattgtct ccgggctgtt cccgcggatg gagagggact tcgagccccc      3000
     ctccatgggc gcgccgccac gcggtgacgt gagcggtgat gcccctgctg aggtggtccc      3060
     tccgagcatc tcggaggagg agattcgtgc ggccgtgtcg aggatgcgga ggaaggacgc      3120
     ggcccccggc cctgacggtg ttcacggccg ggtctgggat ttggccttcg gtgcccttgg      3180
     ggaccggctc gtgcggctct ttgaagcctg cctcgagtcg ggacggtttc cgaagcagtg      3240
     gaagacgggc agacttgttc tgctgaggaa ggagggacgc cccgcggact cacctgcggg      3300
     gtatcgtccc atcgtgttgc tggacgaggc gggaaaactg ctcgagcggg tggtggccgc      3360
     ccgcatcgtc cagcacctga cgggggtggg tcccgatctg tcggcggagc agttcggatt      3420
     cagggagggc cgctcgacca tcgacgcggt gatgcgcgtg cgcgccctct ctgatgaggc      3480
     tgtcggccgg ggcggggttg cactggcggt gtccctggac atcgccgacg cgttcaacac      3540
     cctgagtctc gccgagttcg agcggttcct gggcgggctc gaggcgttgg tccatcgctt      3600
     cgagtctcgc ccggtgatac tggcggggga cctcaacgct aaatgtacgg cgtggggttc      3660
     cccccgcacg gactcgcgcg gcgagttcct gtcggagtgg gctttcgcga ccggcctctg      3720
     tcttctgaac agaggttcgg tcgcgacctg cgtgcggtgg aacggggaat cacacgtgga      3780
     cgtgtcgttc gcgtctccgt ccgccgcgcg ccgcgtccgt ggctggcgtg tcctcgaggg      3840
     ggcggagacg ctctcggacc atcggttcgt ccgattcgag ctctccgttt ccacctcgtt      3900
     gaacgcgccg gccgaagacg cccgcggcga ggaggagctc ccgcgtagcg ctccccgatc      3960
     attcccgcga tgggcactga agcgcctgaa caaggtgctc gcggtggagg cggccacagt      4020
     ggccgcgtgg gcgccgatgc ccgcgcgtct agtggacgtg gagtcggagg ccgaatggtt      4080
     ccggggcacg atgcgtcgcg tctgcgatgc tgcgatgccc cgggtcggcg gtcgcgctcc      4140
     gcgtggcggt gcgtattggt ggacgcccga gatcgcgctc ctccgagagg agtgcgtgcg      4200
     ggcgcgccgc cgaagcgccc gccaccgccg tcgccgcctt cgcgatgcgg acttcgcgga      4260
     ggtggcggcc cgcctgcatg ccgactgccg tcagaagcag gaggcgctgc ggcgggccat      4320
     cggcgaggcc aagtctcaga gcatggagac tctcccgggt ctgagcgtag tttgctacgc      4380
     ggacgacact ttggtcgtgg cccgggggag ggacttgcgc gagtctgccc gtctttcctg      4440
     cgcgggggtg gccttcgtcg tcggcaggat ccgaaggctg ggtctggagg tggcgctcga      4500
     taaatcccag gccctgttgt ttcacggggc ccggagagcg ccgcctcagg gggcccacct      4560
     cgtgatcgga ggcgttcgcg tcgagatcga ggcgaccggg ttgcggtacc tcggtctcgt      4620
     actggacggt cgttggagct tccgcgctca cttcgaaaga ttaggtcccc gactgatggc      4680
     ggccgccggc tcgctgagtc ggctgttgcc gaacgtcggg gggcccgacg cggtggtgcg      4740
     ccgcctctac acgggggtgg tgcggtcgat ggcactgtac ggggcncccg tgtggtgcca      4800
     cgccctgacc cgcgacaacg tcgcggcgtt gcgacgnccg cagcgngcga ttgcggtcag      4860
     ggcggttcgc gggtaccgca ccgtctcgtt cgaggcggcg tgcgtgctcg ccgggacgcc      4920
     cccctgggac ctggaggcgg aggcgctcgc tgcggattac gcgtggcgat gcgatctccg      4980
     ctccaggggg gagccgcgtc ccggcgcggc ggaagttcga gcgcggaagc ttcaatctcg      5040
     gcgtgccgtg ctcgaggcgt ggtctcgccg cctggcggac cccgcctacg ggcgacggac      5100
     cg                                                                     5102
//
ID   R1-5_BTa    repbase;    DNA;    INV; 8119 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-8119
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 720-720 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           420..2837
FT                 /product="R1-5_BTa_1p"
FT                 /translation="MEPTPSNAVSDKGSGAVARDKVSDSSQPRLFTDLKKL
FT                 QAERTRLEKEKSDQVKVRDANNKVRKDPNIAVTEVTKGKQLYDEALKTLIR
FT                 LETALSRVTKEIDGKKAELDNREKNLENDVVHASEAIKVITELLGECGTVS
FT                 SEKHLQIGNRQFKRDQETRQKLLASLKLKKQDWDVAKKKLDAFRKESDDVA
FT                 EIETVEGDELVCDEEMEVEISNMLKRKRGGSLSLNDSIELVEDIFVEGVFS
FT                 QAAFTKPKRLKSGLSSTPVGTPINSETEGTEADSDNRWGSKQGNRQKRKSK
FT                 TGSTRDTPVNSDNEEAFTQRVNSGNRMEKLLDQILTENMNMRRDFEKQIQS
FT                 LREYVRSVLESPETRRELNQVKEELRKSNEEKEKLRLELAEIQEKIVAKIG
FT                 TNGNEIRGDIKKTDSKIQGLIDKKGEILSENQVKILSKEVAAAVDPSLDTF
FT                 KKEQKAELKKLLDPLQQVVKSNGKKLEKIEKMSTSTFSVSSKDKKELAKLV
FT                 SGEIRQPGWVDNRDTLKVVSHLTTRDPTLHKVLIDLGEATDESPDSFKEKL
FT                 QKREPGLKLEGYWQRGSTVHIKVRDPKSREAIYESAKGNPQIQVKEISPPS
FT                 AVFKILNLEEDFDADKIAKDLYLKNLDHHEGWTETKVAEAMKIFVDRKIGN
FT                 KSGFKYFSSRIIYFRASGGLETLLAPLKSIYIGASKCKIEPTVYVTPCMTC
FT                 GSLDHHKDRCTISEKYKEKQICFRCCKRAGHMAKDCKGSVFCINCHQAGMK
FT                 NTTHSITSYDCPIFKRELEYRMNQVRWGKKELEMGAGVTLEDEGSGGGQNA
FT                 SSTC"
FT   CDS           2963..6067
FT                 /product="R1-5_BTa_2p"
FT                 /translation="MGLYTCKHFTLFSRCYLCKNALVPTIVLPGAQTLPTP
FT                 ENALPHVQTREGDNNHRYTYTFIAANTNRSRSSLDLVLREASKKKAVALVV
FT                 SEPNIKRTLGPEWHADVERGVAILILSSVVGRCIRSGQGKGYVWMEFLDFI
FT                 LVGCYLSPNAGIEAMTESLDCLSVDLGHVKKGILIMGDFNGRSEEWGDHRA
FT                 NQRGTTLSDWIASNNYTIHNVDSGPTFRNSRGGESVVDLALTNRKMAASVV
FT                 ECTVLQDEYLSDHQPLKLSLCIKGRPYVPPQYILPRWRVRGGDLEELSDFF
FT                 RAQTTPDTVGPTECTALITDGCKSKLKLSRPGCLRRTEFWWSPEIGELYKT
FT                 VNAQKREWLHTKDKATTTSTEVDSLEAKWRSSRGELRAMITRSKMEKWNEI
FT                 LEAVEEDPWGDGYKIVTKKFQRIDPSTIPTKAEKLKIAEDLFPEGPSFEKE
FT                 IFDIADEDVPQFTKEELTNAVGRVKGRKAPGPDGLPPESVKLFIVKNIDIC
FT                 LAMFNVCLLTGIFPVIWKIANLLLLPKPKKTPDSPLSYRPICLINVLGKIL
FT                 ERLIVVRLMQECPDLADNQFGFRPGRSTIDAIKHVTDFARTNWRLKNLGTV
FT                 LTMLDIKNAFNSAQWHLILEALKQRNIPPYLLRIIQNYFQDRYLIIDGDLR
FT                 QLSCGVPQGSVLAPFLWIVLYDSVVRGALPMSSVLSAYADDIAIATSERSA
FT                 WAIGDRATAAVRYTVQRIEALNLFVEATKTAVVSLFCSRTDLNVTVKVKET
FT                 AHTPSKFEKYLGVWLDRGLKFGHHVKMTAIKVRRMAGLLTKVMPLHGGCSF
FT                 KKRRVLASVTTSILTYAAPVWVGAMDVKANVSKVISAMRPVKIRVCSAHRT
FT                 VSNEALDVLSNIPPADLLVRRVADRYDLRDPGIAQTNLMRRWRRRWVENPN
FT                 NVAKWTRKLIPDLDMWCQRQFGFPNFYTSQLLTGHGVFSKYMFNLHLCNSP
FT                 MCGYCGLIDSAEHVIFHCQRWDRARRDLFTVIGGPCLPEELVGVLLGERRF
FT                 WRAFEVFAETVLSRKRHDYVSRRITVTKT"
XX
SQ   Sequence 8119 BP; 2212 A; 1624 C; 2160 G; 2123 T; 0 other;
     taaattcagt attatgacaa ccattcgcaa agaatatatt ctctgtcagc tgttttttat        60
     accgtttgat taaatttgaa ggctactcat ttcgagcagg taaatgtttc cactgcgaaa       120
     tgcaatccaa tagattggag gactgataag aggctttcga cgggtaggac gtgttttttt       180
     cgagctcccg ttatctattc agtttcttgt gattttttgt agtgaaagtg gtttatcttg       240
     tatgtgtgga tagagtgaaa agtgtgtgtt acgatgtgat atactttttt gcgttagaac       300
     ttaagatagg gaggatatct ctctatctgt gtgtatgatc attcgggttt cctgttaggc       360
     gtaacggtta tgtaactcag agctactgtc cgactttata gtcacgggaa catagcgtga       420
     tggagcctac tccgtcaaac gctgtgtctg ataagggctc cggagccgta gcgcgcgata       480
     aggtttccga ttcttcgcag ccgcgtttgt ttacagattt gaaaaagctg caggcggaga       540
     gaactaggtt agaaaaggaa aaatctgacc aggtgaaagt aagagatgct aacaacaagg       600
     taagaaagga cccaaatatt gctgttactg aagttacaaa agggaaacag ttgtacgatg       660
     aggccttgaa gaccctaatc cgtcttgaaa cggcactgtc tcgggtaacg aaggaaattg       720
     atggtaagaa agcggaactt gataatcggg aaaagaacct ggaaaatgat gtagtgcatg       780
     ccagcgaagc gattaaagta attacggaat tattgggtga atgtgggact gtttccagcg       840
     agaaacattt acagatcgga aatcgccaat ttaaacgtga tcaggaaaca cgccagaaat       900
     tactggcatc cttgaaatta aagaaacaag actgggatgt agcaaaaaag aaacttgatg       960
     ccttccggaa ggaaagtgac gacgttgctg aaattgagac cgtagaggga gatgagttgg      1020
     tctgtgatga ggaaatggaa gttgaaatta gtaacatgct aaaaaggaag cgcggagggt      1080
     cactatcact taacgattca attgaacttg ttgaggatat ttttgtggaa ggtgtatttt      1140
     ctcaggcagc gtttacaaaa cccaaacgct tgaagtcagg cttgtcgtcc acaccggtgg      1200
     gaactccgat aaattcggag acagagggca ctgaagcgga tagcgataac cggtgggggt      1260
     ctaaacaggg gaacaggcag aagcgtaagt caaaaacagg gtctacgagg gatactccag      1320
     taaactccga caacgaagag gcgttcactc aacgggtgaa ttccgggaat cgaatggaga      1380
     aattactgga ccaaattttg accgaaaata tgaatatgcg ccgagatttc gagaaacaaa      1440
     tccaatcact tcgcgaatat gttaggagcg tattagaatc gccagagacg cgtcgcgaac      1500
     ttaatcaggt gaaagaggaa cttagaaagt ccaatgaaga aaaggagaaa ttaaggttgg      1560
     agttggccga aatccaagag aagatagtag caaagatagg aacaaacgga aatgaaatta      1620
     ggggagacat taaaaaaacc gactcgaaaa tccaggggct aattgacaaa aaaggtgaaa      1680
     tcctctcgga aaatcaagtt aagatattat ctaaagaggt ggcagcggcg gtggatccgt      1740
     cgttagacac ttttaagaaa gaacaaaagg cggaattgaa gaaattatta gatccccttc      1800
     aacaggtagt taagtctaac ggcaaaaaat tggaaaaaat agaaaaaatg tcaacatcaa      1860
     cgttttcggt atcatcgaaa gataagaagg aacttgctaa attagtgtca ggagaaattc      1920
     gtcaacctgg ttgggtcgat aatagagata cgttgaaagt agtgagtcat ctcacgacac      1980
     gcgatcctac tttacacaag gttctgatcg atctagggga agctacggat gaatcgccag      2040
     attcttttaa agaaaaatta caaaaaagag agccaggact taaacttgag ggttactggc      2100
     agcgaggttc cacagtccat attaaggttc gtgatcccaa atccagagag gcaatttatg      2160
     aatcggcaaa aggaaatcca cagattcagg tcaaagagat ttccccccca tcagcggtat      2220
     ttaaaatcct gaatttagag gaggactttg acgcggacaa gatagcgaaa gatctatatc      2280
     ttaaaaactt ggatcatcat gagggatgga cagagactaa ggtagcagag gcgatgaaaa      2340
     tttttgttga taggaaaatt ggaaataaga gcggttttaa atatttttcg tctcgaatca      2400
     tctattttag agcatccggt ggtctagaaa ccttgttggc cccattaaag tctatttaca      2460
     ttggagcaag taagtgtaaa atcgaaccga ccgtgtatgt gacgccctgc atgacgtgtg      2520
     ggtctctaga tcaccataag gatcgttgca cgatatcgga gaaatataaa gagaagcaaa      2580
     tctgcttcag gtgttgtaaa cgtgctggtc acatggctaa agattgcaag gggagcgttt      2640
     tttgtattaa ctgtcaccag gccggcatga agaatactac tcatagtatc acctcatatg      2700
     actgccccat ttttaaacgt gaattagaat atcgaatgaa tcaagtacgg tggggaaaga      2760
     aggagctgga aatgggcgcg ggtgtgacgc tagaggacga ggggtcggga gggggccaaa      2820
     atgcctcttc aacgtgctga gctcgggtga tagacgagtc ggtgaggggg gaaatggaaa      2880
     tactacatca gataagagag agctcgagtg taagcatcaa cgatgcattt cgtcttgccg      2940
     ctgctgtttt cagccggcgc ttatgggcct ttatacttgt aaacacttca ctttgttttc      3000
     acggtgttat ttatgtaaaa atgcgcttgt cccgactatt gtactgccag gtgcacaaac      3060
     tttaccgact ccggagaatg cacttcctca tgtacaaacg agagaggggg ataataacca      3120
     tcgatatacc tatactttta ttgccgcgaa tactaatcgt tcgcgaagct cgttagatct      3180
     cgttttacga gaggcgtcaa aaaagaaagc cgttgcattg gttgtatctg aaccaaacat      3240
     aaaacgaact ctgggtccgg aatggcatgc ggatgtagag agaggagtgg ccattttaat      3300
     tctgtcgtcg gtcgtcggac gatgtattcg ctccggacag ggtaagggtt atgtttggat      3360
     ggaattttta gatttcattt tagtgggttg ttatttgtcc cccaacgcag ggatcgaggc      3420
     gatgacagag tcccttgact gtctttctgt cgatttagga cacgttaaaa aaggaatttt      3480
     aatcatgggg gatttcaacg gaagatccga agaatggggg gaccaccgtg caaatcaacg      3540
     cggcacaacg ttatccgact ggattgcctc caacaattac acgatacata acgtggattc      3600
     gggtcccact tttcgaaatt cgaggggggg cgaatctgtc gtggacctgg cacttacaaa      3660
     tagaaaaatg gcagcatccg tagtagagtg caccgtgttg caagatgagt atttaagcga      3720
     ccatcaaccg cttaagctgt ccttatgcat taagggtcga ccctacgtac cgccgcagta      3780
     cattttgccg cgctggcgcg tcaggggcgg ggatcttgaa gagttgtccg atttttttcg      3840
     ggcgcagacc acccctgaca ccgttggccc gacagaatgt actgcattaa ttactgacgg      3900
     atgtaaatcc aagcttaaat tgtcgcgacc cggctgcttg cgtcggactg aattctggtg      3960
     gtcgccggag attggggagt tgtataagac agttaatgcg caaaaacgag aatggctgca      4020
     tactaaagat aaagcaacaa ctacttcaac agaagtggac tctcttgagg ctaaatggcg      4080
     ttcctcgcgt ggggaattga gggcaatgat caccagatcc aaaatggaaa agtggaatga      4140
     gatattggag gcggtcgaag aggatccctg gggagacggg tataagatag tcacaaagaa      4200
     attccagcgt atcgatccgt ctactattcc aactaaggcg gaaaaattga agatagcgga      4260
     agatctgttt cccgagggac cctcctttga gaaggagatt tttgacatcg cggatgagga      4320
     tgttccacaa tttactaagg aagagttgac caatgcggtt ggtcgggtca agggccggaa      4380
     agccccgggt ccggacgggc tgccccctga aagcgtaaaa ctttttatcg tcaaaaatat      4440
     agatatttgc ttagcaatgt ttaatgtctg tcttttaact ggtattttcc ctgtcatctg      4500
     gaagattgct aatttactgc ttttgccgaa accaaaaaag acgccagatt cccccctttc      4560
     ctataggcca atttgtctca ttaatgtact tggcaaaatt ttagagagac taattgtagt      4620
     tagattaatg caggagtgcc cggatttagc ggacaatcag tttggttttc gccctggccg      4680
     ttcaacgatt gatgccatta aacatgttac agattttgcg cgtactaact ggcgcctaaa      4740
     aaatcttggc acggttctaa caatgttgga cattaaaaat gcgtttaaca gcgcgcagtg      4800
     gcatttgatc cttgaagccc tcaaacaacg aaacatcccc ccgtatttac tgagaattat      4860
     ccaaaattat ttccaagata gatacttaat aatagatggt gatctgcggc agctctcttg      4920
     cggagtaccg caagggagtg tacttgcgcc gttcttgtgg atagttctct atgattcagt      4980
     agttagggga gctctgccga tgagcagtgt tctatcggcc tatgccgatg atattgctat      5040
     agctacttcg gagcgcagcg catgggctat cggggacagg gcgacggcgg cagtacgtta      5100
     tacggttcag cgaatcgagg ctctgaattt atttgtcgag gccactaaaa cagcagttgt      5160
     atcattattt tgtagtagaa ccgacttgaa tgtgactgta aaggtgaaag agacggcgca      5220
     tacgccatca aaatttgaaa aatatctcgg agtttggcta gatcggggtt tgaaattcgg      5280
     tcaccatgtc aaaatgactg cgatcaaagt aaggcggatg gcaggcctct taaccaaagt      5340
     aatgccttta catggtgggt gttcatttaa gaaaaggcgc gtgcttgctt cggtcacgac      5400
     cagcatttta acttatgcgg cgcctgtttg ggtcggtgcg atggacgtca aggcaaatgt      5460
     cagtaaggtt ataagtgcta tgagaccggt taaaatccga gtgtgttctg cccatcgcac      5520
     tgtctcgaac gaggcgttgg acgttttgtc gaacattcca ccggccgatc tactggtgag      5580
     acgtgtagca gacagatacg atctacgcga tccgggtatc gctcagacaa acttaatgag      5640
     aagatggcgc cgaaggtggg ttgaaaatcc aaataacgta gcgaaatgga cacggaaatt      5700
     gattccggac ttagatatgt ggtgccagag acagtttggt ttccctaatt tctatacatc      5760
     gcaattacta accggacatg gtgtttttag taaatatatg tttaatttac atctttgtaa      5820
     ctcacctatg tgtggttact gcggcttgat tgattcagcg gaacacgtaa tttttcactg      5880
     ccaacggtgg gaccgggcgc gccgggatct atttacagtg atcggtggcc cgtgcctgcc      5940
     cgaggagttg gttggggttc tcttggggga gcgcaggttc tggcgggcct ttgaagtttt      6000
     tgcggagaca gttctatcaa ggaagagaca cgactatgtg tccagacgaa ttacggtaac      6060
     aaaaacgtaa aaagctctcg gagtataagg ctgccacagg ccgggaaatc gtgtgcattg      6120
     tggtgccgat aagaccgact tttggtagtg attgtagagt ttgcatttct cgtgtattta      6180
     catgatctct atacatattt acaaatattc acagtaatgt ttcggggatg ctcttattaa      6240
     ttatggttgg tcagaacata aatttaggtt aagttggttt gtattctgtt tgtacatgtt      6300
     tctgactacc cataatacct ttgagggtgg tcgaatcatg ggagaccagg agattttgcc      6360
     cgtaaggatt ttgctccctg ccacggttgg accattatgt atgtatattt acattatctt      6420
     ctatacatat ttacaaatat taacagtaat gttcgggggt gctcgctaga gattgcaact      6480
     tccgctttga ctttcgttcc tcacggagag ccttaattgc tcctgtgcag ttttattatg      6540
     taaacgaata gtgagtaatg cgtggtgagt caccactcca agttttctta tcatggtctt      6600
     tccggtttct ctgattgtga gtgagtaaag tgatgtgcgt gtgcagtgtg tttaagtctc      6660
     tcgaaatggg catcttagac aatcgtatcg aaaatactta cttggagaaa aacggaaacg      6720
     tttatcttca gatagattca ctaactgtgc atagttttct tatagttgcc ctttttatgt      6780
     tgtttattct atatttggtg agaaagtggt gtgttggaaa cgacagtcga cacgtgcaaa      6840
     gtgagacggc cctgcgggcc ctttcaacag tcgggactcc ctcggcttga taaggcgtta      6900
     tcgggtgagt tgtatcatgg tttagttgag tgcagtgtct aatgtagtct ttgtgctggt      6960
     ttccttttta agcgcctgtt agggggaggg gtagagattt ctcttcccct ccccttgtta      7020
     acgcagggga tctgtctgtg gatctggggt ctgacgctcc cccgtacccg agttagccgg      7080
     caaattgcta gtgatagtcg gttacccttc tgaccccgtg gattgccacc taggtgactt      7140
     tctcgggcct ctccccccac cttagggtgg gattggcatc ccctgatgtc gccgcccctt      7200
     tgtgcctgcg tcctcggttg tttgcccata tcctgtctga tccacggcgt acagatcaag      7260
     cggaaccgtt gacgtgtctg gttccgtgat tcccgcgccc cccaggatct cggaatgcgg      7320
     accttgagtc cgcgcatccg tccctggtgg ttggcggggg ctgaaagcgg gctggaccgg      7380
     aggggcaagt caaattgact agtgcttcgg acggggatgg ccggccgcgc ccctcactac      7440
     ttgtagggag gggcgccgca aagtctgggt cctatgggtg gagtgggtag gacttggagc      7500
     gccggcgtaa cacaggactc ctcggagtcc tggccggggg ccacctggaa tcccccacac      7560
     actcacggga ggtaaccttt ccgcttcaga ggttccagtg ctgacggacc ccttggggta      7620
     cggattccca tcctcagagc tgctgggagg tttaaattcc tcctggcggg ggttaggtac      7680
     gccggaggca tcggggtgct cctatgagga tgggggcccg gctggacact gttgcggggg      7740
     gccctctcgc ctgacgaggt aatgaccgta ggttgaccgt cgggtgggaa gcaaactcgg      7800
     acaaaagggg atgcgtagag cggatgcatc tcaaggggag tgtcgttagt gtttggcggg      7860
     cccaccgtca tgggccaaac ccacataccc agtcacactc tcgggccgag gtcttcgggc      7920
     agcaatgccc ggggatgttc cactcggtct gggccgcgat tggcatctgg tactcggggg      7980
     cggggatgga acctccccct cggggcccgc cggatctggg ggtccacgct gggtccacgg      8040
     atctggttcc ccctcaatcc agtgcgggag aaagcagatt ttcacttccg tttaaacaaa      8100
     aaaaaaaaaa aaaaaaaaa                                                   8119
//
ID   R1-5_DEl    repbase;    DNA;    INV; 5458 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-5458
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4606-4606 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           376..1803
FT                 /product="R1-5_DEl_1p"
FT                 /translation="MASVPPPEGANMEMSDSDKSASSRASSAARGRSRPKG
FT                 KRTKAPPRSVSQAKVAAIHGSMGLPEPDFDEALSSLEGPSTSMEAAIAATL
FT                 ARVANSAAAVEDVVAPPRAAQATGSVVPAAPTAAKSMVKHRIDDSSTVASE
FT                 LSQIRDEFVTNVVSPKLNASQASAMMRSLNRYEEMVLSLATRNAVLEEMSK
FT                 RQSLAPPTPVVAPAVVSLPPTGYAAAYPSLPVPHAAPVPAPRKPRETWSAV
FT                 VVSKDPGVTGSQVAEKVRKEIAPTLGVRLHEVRGLARGGAIIRTPSSGEIR
FT                 KVVASKRFGEVGLEVQQNPAQRPRVVVSNVDTATTPADFMKELYKNNFAEV
FT                 MDLAAFEKAVHLEKPWTAADGATVNVTLEVNAIALEILDGGKAYIGWFAYN
FT                 CRALVRTYACHRCVGFDHKVAQCRYKENVCRQCGQAGHSARGCTNPTDCRN
FT                 CRFKGYPSGHHMLSPGCPVYAAVLARVNARH"
FT   CDS           1806..4862
FT                 /product="R1-5_DEl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSFIQANCGRGEVAMSDALVRMRQSNCLFALLQEPY
FT                 LGAEFLGRLPAGQRVFSNPSGDAAIAVDHHDAICMPVEPLTTEFGVCVRLQ
FT                 GSFGSIFLCSAYCRFGFPLEPYLRYMDAFLLQASRTPAILGLDANAASPMW
FT                 FSKLSHFAERHANYSRGELLCEWILEKGAIALNQPSEVYTFNNMRGFHSDI
FT                 DVTIANNAANMWATYEWRVDEWGPSDHNIIYVEATLTTTNAIEGVPPVPSW
FT                 NFSNARWRLFEQEIVRRAAEIPEELFESPLDDQVSTLRQIVHDVCDLALGR
FT                 RTPGQPRRRVGWWTADLSAGRRRVRRLRRRVQDARRRGDVDEIERLVIELR
FT                 LASADYKKLILNTKEDHWRRFVGENSHDPWGRVYKICRGRKRTEIGCLRVN
FT                 GELVTDWGDCARVLLRNFFPVAESDAPIALPQDVPPTLEVAEIAACVAKLK
FT                 SRRSPGMDGINGTICKAVWRAIPEHLTALFSRCIRLGYFPSEWKCPRVVAL
FT                 LKGPNKDKCEPSSYRGICLLPVFGKVLEAIMVNRVKEVLPEGCRWQFGFRQ
FT                 GRCVEDAWRHVMSSVRASPAVYVLGIFVDFKGAFDNVEWSAALRQLDTLGC
FT                 REMSLWQSFFSGRGATIKSSYGTVNVPVTRGCPQGSISGPFIWDILMDVLL
FT                 QRLEPYCTLSAYADDLLLLVEGNSRRNLEEKGAQLMSIVETWGVEIGVAVS
FT                 TSKTVIMLLKGSLNRSPSVRFAGANLPYVSSCRYLGITVSERMSFLKHIVL
FT                 LKERMTGVVGALARVLRADWGFSPRARRTIYAGLMAPCALFGASVWYATAR
FT                 QVVAKMRLNACQRLILLGCLPVCRTVSTLALQVLAGAPPFDLAAMKIAVKY
FT                 KLKRGYPLEEYDWTYGEDLTGLSWEQRMVRIDDCLLLDWQDRWDDVDAPGR
FT                 VTNKFVPDVRLIYRNPNFGFPMRTGFLLTGHGSFNAFLHRRALSDTAACSC
FT                 GDPNEDWEHILCACPLYADLRDLDGLGVRRVGENWIFEGILEDEERMQRLT
FT                 EFAEEVFDRRRGI"
XX
SQ   Sequence 5458 BP; 1192 A; 1339 C; 1671 G; 1256 T; 0 other;
     agacgtgttt ttcgtgcgct ccggttgatt tttcgatttc gagagaagta gacggaataa        60
     attcctaaaa agtgaatttc ctgaaagggt ttcacctgga aagtgcttgg tgtgtttttc       120
     gcgattgtgc attgcgtatt ttcgcggaaa atcgagcttt tcgtctggta attttccact       180
     tgcgccacgt gcgttttggg aaaagagagc gcgtcgctct ctgagagaga acagagctgt       240
     gcacagccag ctgtcgaaca gctgtttagc gggtgtgtgt cccgactaat ttcggagttg       300
     ccacctcgtc tgctggatcg agtatcggat cttggtaagt gtacaagctt attgagtccg       360
     agaaaagggc gatagatggc gtcggtgccc cctccagagg gcgccaatat ggagatgtcg       420
     gacagcgaca agagtgcaag cagtcgggca agcagtgctg ctagaggtag aagtcgccct       480
     aaaggcaagc ggaccaaggc gccgccgagg tccgtttcgc aggccaaggt ggctgccatt       540
     cacggtagta tgggcttacc ggagccggat tttgatgagg cgctttcctc gcttgaggga       600
     ccgtctacgt ccatggaagc cgccatcgcc gccactctcg ccagagttgc aaacagtgct       660
     gcggctgtgg aagatgttgt tgccccccct cgtgctgctc aagccaccgg atccgttgtt       720
     cccgctgcgc ccactgccgc taaatcgatg gtcaagcatc gcattgacga ttcgtcgacg       780
     gtcgcgagcg agctctccca aataagggat gagttcgtga ccaatgtggt gtcgccgaag       840
     ttgaacgcct cgcaggctag cgcaatgatg cgtagcctga ataggtacga ggagatggtg       900
     ctttcgctgg caacgcgtaa cgccgtcctc gaggagatga gtaagcggca atcgcttgct       960
     cctcctacgc ccgttgtcgc gccagctgtg gtctcattgc cgcccaccgg gtatgcagct      1020
     gcgtatccga gccttccggt gccgcacgct gctccggttc ctgcgccgag gaagcctcgc      1080
     gagacttggt ctgctgttgt agtcagcaag gacccgggcg tcacgggcag ccaggttgcg      1140
     gagaaggtgc gcaaggagat tgcccctacg ctcggtgttc gcctgcacga ggtgagaggg      1200
     cttgcgcgtg gcggtgccat aatccgcacc ccctcgtcag gagaaataag aaaggttgtc      1260
     gcaagcaaga ggttcggcga agttggcctg gaggtgcaac agaaccctgc gcagcgaccc      1320
     agagtggtgg tgagcaacgt ggacacggcc acgacgccgg ccgactttat gaaggagctg      1380
     tacaagaaca acttcgcaga agtgatggac ttggctgcgt ttgaaaaggc ggtgcacctg      1440
     gagaagccgt ggactgcagc tgatggcgcc acagtaaatg tgacgcttga ggtgaatgcc      1500
     attgctttgg agatcctgga cggaggcaag gcgtatatcg gctggtttgc ctataactgc      1560
     cgagcgctgg tgcgtactta cgcgtgccac agatgcgttg gctttgacca caaagtcgcg      1620
     cagtgccgat acaaggagaa tgtgtgccgc cagtgcggac aggccggcca cagtgcgcga      1680
     ggctgcacca atccgacgga ctgccggaat tgccgcttca agggctaccc gtcggggcat      1740
     catatgctct cgccgggttg tcctgtgtat gcggcggtgc tggcgagggt gaatgctaga      1800
     cattaatgtt tagcttcatc caagcaaact gtggtcgtgg cgaagttgcg atgtccgacg      1860
     ctctagtcag aatgcgacag tcaaattgcc tgttcgcact gctacaggag ccgtacctcg      1920
     gagccgagtt tttgggaagg ctgcccgcag ggcaaagggt cttttcgaat ccgagtggag      1980
     atgcagccat tgctgtggac catcacgatg ccatctgcat gccagtggag cccctcacca      2040
     cggagtttgg cgtatgcgtg aggctgcaag ggagttttgg ctcaatcttc ctttgctccg      2100
     catactgccg gttcggtttt ccgctagagc cgtacctcag gtatatggat gcgtttctgc      2160
     tgcaggccag cagaactccc gcaatccttg gactggatgc gaatgcagca tcccccatgt      2220
     ggtttagcaa actctctcac tttgctgaga gacacgctaa ctactctcgg ggtgagctgt      2280
     tgtgtgagtg gatactggag aagggagcca tcgcccttaa ccagcctagc gaggtataca      2340
     cgttcaataa catgagagga ttccacagcg atattgacgt gacaattgcc aacaatgcag      2400
     cgaatatgtg ggccacatat gaatggagag tggacgagtg ggggccaagt gaccacaaca      2460
     ttatttatgt tgaggccacc ttgaccacca ctaacgcgat cgagggtgta cctcctgtgc      2520
     cgtcctggaa cttctccaat gcacgttggc gattgttcga acaggagata gtgaggagag      2580
     cagccgaaat tccggaagaa ctttttgaat cgccgttgga cgaccaggtt tcgaccttgc      2640
     ggcagattgt ccacgatgtg tgcgatcttg ccctgggccg aaggacacct ggacaaccga      2700
     ggagaagagt gggctggtgg accgctgacc ttagcgcagg gcgccgcaga gtcaggagac      2760
     tccgacgccg tgtacaggat gctcgccgtc gtggagacgt ggacgagatt gagcggcttg      2820
     tgatcgagtt gaggcttgcc tcagccgatt acaaaaagct catcctgaac actaaggagg      2880
     accactggag acgctttgtt ggagagaatt cgcacgatcc ctgggggcgt gtctacaaga      2940
     tttgccgagg tcgaaaacgg acggagattg ggtgcctgcg tgtaaatggc gagctggtca      3000
     ctgattgggg tgactgtgcg cgagtgctcc ttcgtaactt tttcccagtt gcggagtctg      3060
     atgcaccgat tgccttaccg caggatgtcc caccgaccct tgaagtggcc gagattgctg      3120
     cttgtgtcgc caagctgaag agcagacgct ctcccggcat ggatggcatc aacggcacaa      3180
     tctgcaaggc agtctggcgc gccattcctg agcacctaac ggcgttgttt tcccgctgta      3240
     ttcggttggg gtactttccc agtgagtgga agtgtccacg tgtagtggca ctgctcaagg      3300
     gacccaacaa ggataaatgt gagccatctt cctatcgggg gatctgcttg cttccagttt      3360
     ttggaaaggt gctcgaggcc atcatggtta atcgtgtgaa agaagttctt ccggaaggat      3420
     gcagatggca gttcggtttt cgccaaggac gatgtgtgga ggatgcttgg agacacgtta      3480
     tgagcagcgt ccgtgcctcc ccggcagtat acgtgctcgg gatcttcgtg gacttcaaag      3540
     gagcatttga caacgtcgaa tggagcgctg cgctgcgcca gctagatacc ctgggatgcc      3600
     gagaaatgag cttgtggcag agctttttct ccggccgggg cgcaacgatc aaaagcagtt      3660
     atgggacagt caatgtccct gtaactagag gttgcccgca ggggtcaatc agtggcccat      3720
     tcatatggga cattctgatg gatgtactgc tacagcgcct tgagccgtac tgcactttga      3780
     gtgcgtacgc ggatgatctg ttgctactcg tcgaaggaaa cagtcgaaga aatctagagg      3840
     aaaaaggagc gcaactgatg tccatcgtag aaacgtgggg agtggaaatt ggcgttgccg      3900
     tttccaccag caagacggtc ataatgctgt taaaaggttc ccttaaccgg agtccgtcgg      3960
     taagatttgc aggagcaaat ctaccatacg ttagcagctg ccggtacctt ggcatcacag      4020
     tcagcgagcg catgagtttt ctcaagcaca tcgtactgct gaaggagcga atgactggag      4080
     tcgttggagc attggcgcgt gtgcttcgag ctgactgggg attcagtcct cgagccaggc      4140
     ggaccatata tgccggactc atggcgccat gcgcgctatt tggtgcctcg gtgtggtacg      4200
     ccacggcaag gcaagtagtc gcaaaaatgc gtctaaatgc ctgccaaagg ctgatcctac      4260
     ttggatgcct tccggtatgc cgaacagtgt caaccctggc actgcaggtg cttgctggag      4320
     ctcccccgtt tgatttggct gctatgaaaa tagcagtcaa atacaaactc aaacgtggat      4380
     acccgctgga ggagtacgac tggacctacg gcgaagacct cacaggtcta agctgggagc      4440
     aacgaatggt gcggatagac gattgcctac tgctggactg gcaggacaga tgggacgatg      4500
     ttgatgcacc aggacgggtg accaacaaat tcgtaccaga tgtcaggctc atctatcgga      4560
     atccaaattt tgggttcccg atgcgtacgg gattcttgct cacagggcac ggatcgttca      4620
     atgcatttct gcacaggaga gccctcagcg atactgccgc atgctcatgt ggcgatccaa      4680
     atgaggactg ggagcacatt ttatgtgctt gtccgttata tgcagacttg cgcgacctcg      4740
     atggacttgg tgtgcggcgc gttggcgaaa actggatatt cgaaggaatt ctggaggacg      4800
     aggagaggat gcagcgattg acggagttcg ctgaagaggt gttcgaccgc aggaggggca      4860
     tttagcccaa cttccttgct gtgtggttag cggcgaagaa ttctgccaca gctcgccatt      4920
     gcttgtcgta ggaggcgact aatttggcac tggggcaccc tatccgggct tgtcggagcc      4980
     aaaggggagg gcctaccgag cccttaattt cggtaccacg ggttgggcag tttccaaggc      5040
     tgcccattga ggtcggcccc cttgtgggag tatcgtggtg gctgtggttg acacccatat      5100
     cgcgggtaga actctcgggt tcgacgtgga gttgcgttat acaactcggg tgctgtgacc      5160
     catagagcag tagagatttt agatgatctc gcccctcagc aagggggagt gtttgcccga      5220
     caagtaaaca ctcgaattga caccggggtg gttgctatgt acatagctat agcttctagt      5280
     ccggggcgtt ggtctggcgc ttaatctaga cacatgcact atatactcac ttgtgggtgt      5340
     gttatgtact cacttgtggg tgcatgatat atcaacttgt gggtatatta gagtgccgtg      5400
     gttgtaatcc cttcagtgtg gaacacgcca cgtaaaataa gtgtcggaga gatctgat        5458
//
ID   R1-5_DF     repbase;    DNA;    INV; 4355 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-4355
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 989-989 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           78..1238
FT                 /product="R1-5_DF_1p"
FT                 /translation="MRDELTTSIKLQKTAALALAKSAGAAGVSTLSRETQV
FT                 VLTTVCKHTQTDILPMEPYAEGKSTPKRLRDPQTLERSTPPKKSRTKSDGN
FT                 RKVVNASQKVVNPELRVVRASSPRAVVLPAKTTSQTSDADPAVTAKPEAWT
FT                 KVSKKPKRATRPRPDAVMVSGAGLSYADMLRAVKGEPSLNHLKESVQSIRK
FT                 STSGNLVLRLSRSSAKTATEVQMAVVQALGTTAVVKTLTDQTLIEILDLDE
FT                 LTTKEEVAEAVKAKLEDHSLGEDTVRSLRKVNGGRQIAVLKLPSPMAAKLI
FT                 GSKIRVGWVVCRTRLXXEPKHCFKCLGFGHXASACHSTADFNGACYRCGMA
FT                 GHLANTCTNAPNCRLCEHKGLKKDHATXCRTCPAYLEALKKLKC"
FT   CDS           1235..4222
FT                 /product="R1-5_DF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLRFVQINLNHCRAAQALLEKAIHENRIDVAILSEPH
FT                 RVELVGDWVDATSRKAALWCCCRGRNFAXVKPFTHFSRVLINSIWVYSCYL
FT                 PPSLKLAEFTTVMEDLANDARHRSPVLIAGDFNAWATVWGSQETNARGRTL
FT                 LEAFASLDITLLNSGXKPTYCKAGMESFIDLTFVSSSLHGATQWMVSDMYT
FT                 GSDHQAIICSVGVPPEPRNVQPSPIAYRSETLDLHVFXETLGSGLTRLNEE
FT                 GLPDDAQSLADATMDSVKAACNSSMNTRRLNGTHHPPVCWWNESLTEIRSC
FT                 CIHARRLCQRARGTPNFPVLQESFKVARKTLKNAIRDSKRECFLRLCDNAD
FT                 KDPWGAAYKNVVKRLNSGGSRVPTDASSLATIVETLFPQKALPTLQSLPPD
FT                 TDPERRLIPVSPEEVVLAASKIKPNKAPGPDXIPNRAIKLALNLHPEKFAY
FT                 LFTRCFEEGTFPXQWKTQKLVLIPKPGKPPSDPSAYRPICLLDTAGKILEG
FT                 LIASRLETAIERGGGLAHTQFGFRKSRSTLDAIGMVVDIASKAIEGTRWKG
FT                 GDKEYCLIVTLDIKNAFNSADWGSILRALSAFNVPNHLLNLIRDYFRERWL
FT                 EVATDSGTTRYPVSAGVPQGSVLGPPLWNAMYDGVLRLPTPPRTRLIGFAD
FT                 DVAIVTVEKNIHEAEESCNSCIRSIIRWLNAVGLELAAHKTEAVLVSSRKT
FT                 VETARIRVGDQVINSKRAIRYLGVMIDTRLCFREHLDFVNRKAAVAGQALS
FT                 RIMLNSRGPKQQRRQLLMSVVRATILYAAPIWHTALSTPSYFSGIASTYRL
FT                 CALRVCSGFRTMSDDAALVIAGMVPIDLLAREAFSLRSSGPATSAVXTNLR
FT                 ALSISSWQTRWNASTKGRWTHRLIPDLAXWMDRKHGQVNFDLXQILSGHGC
FT                 FRGYLKRFGHETVSDCTLCGAGIEEDAEHAFFVCNRFAAARHEVGVQVGGA
FT                 LSPDTLIATMLSSESNWALITAFAGQVTKELRRLERIRRGA"
XX
SQ   Sequence 4355 BP; 1100 A; 1237 C; 1144 G; 858 T; 16 other;
     gcgctgttag agcaattggt gaagcccttg aaaggctctc ggtcctgttt agtggccagc        60
     gccacatcaa tcagcttatg agagacgagc tcaccacgtc gatcaagctt cagaagacgg       120
     ccgctctagc cctagccaaa tcagcaggcg ctgccggcgt ctcaacactc agtcgtgaga       180
     cccaagtggt cctaaccacc gtttgcaaac atacgcaaac ggatatcctg cccatggagc       240
     cctatgcaga gggtaaaagc acacctaagc gcctgagaga cccacagacc ctcgaacgct       300
     ctacaccccc caaaaagagc cgtaccaagt cggacggtaa ccggaaggtg gttaacgcta       360
     gccagaaggt ggtgaacccg gaactaaggg tggtgagggc gtcaagcccc agagccgtgg       420
     tgttaccagc gaagaccaca tcacagacct cggatgctga cccagccgtc actgccaagc       480
     ctgaagcctg gactaaggtg tccaagaagc caaagcgagc gacacggcct cggcccgatg       540
     cagtcatggt ctcgggagca gggctatcct acgctgatat gcttcgcgca gttaaggggg       600
     agccctcgct gaaccaccta aaagagagcg tccaaagcat taggaaatcc acgagcggta       660
     accttgtact ccgtctgagc aggtcctctg ccaaaacagc caccgaagta cagatggcag       720
     tagtgcaagc actaggcact accgctgtcg tcaaaacact gacagaccaa actcttattg       780
     agatcctgga tctagatgag ctgaccacaa aagaagaggt ggctgaggct gttaaggcca       840
     aactagaaga ccactccctt ggcgaggata ctgtccgatc cctacgcaag gtcaacggtg       900
     ggcgtcagat cgccgtcctt aagctcccta gcccaatggc agccaagttg atagggtcca       960
     agatccgcgt cgggtgggtt gtttgccgca ctcgtttgaa nntggaacca aagcactgct      1020
     tcaagtgcct tgggttcggc cacatngcat cagcgtgcca cagcacagcc gacttcaacg      1080
     gagcgtgcta tagatgtgga atggccggcc acttggccaa cacttgtacc aacgcgccaa      1140
     actgccgcct atgcgagcat aaggggctga agaaggacca cgccacggna tgccgtacat      1200
     gcccagccta ccttgaagcg ctcaaaaagc tgaaatgttg agatttgtcc agatcaacct      1260
     caaccactgt agagcggccc aagccctcct cgaaaaagca atccatgaga accggataga      1320
     tgttgccatc cttagcgaac cccacagggt tgaacttgtg ggtgactggg tcgatgccac      1380
     atcaaggaaa gctgctctgt ggtgctgctg tagaggcaga aacttcgccg angtgaaacc      1440
     cttcacacac ttcagtcgag tgctgatcaa ctccatatgg gtatatagct gctatctccc      1500
     accaagctta aagctggctg agttcaccac agtcatggaa gatctagcga atgacgcaag      1560
     gcatcgaagc ccagtcctca ttgctgggga tttcaacgcc tgggcaacgg tctggggcag      1620
     ccaggagaca aatgcaagag gccgcaccct gctggaggcc tttgcgtctc ttgacatcac      1680
     actcctgaac tcaggcaska agccaactta ctgcaaagcc ggcatggagt ccttcattga      1740
     cctcactttc gtaagctcct ccctacacgg tgctacgcaa tggatggtta gtgatatgta      1800
     cacgggaagc gaccaccaag ctatcatctg cagcgttggg gtgccccctg agccaagaaa      1860
     cgtgcagcca tcaccaattg cctaccgaag cgagaccctc gacctacatg tctttasgga      1920
     aacgctgggg tctgggctga cccgattgaa tgaggagggc ttacccgacg atgcccaatc      1980
     tctggcggac gcaaccatgg acagcgtcaa ggcagcctgc aatagcagta tgaacactcg      2040
     acgactgaac ggcacccatc acccccctgt gtgctggtgg aacgaaagcc ttaccgaaat      2100
     ccgtagttgt tgcatacatg cccgtaggct ctgccagcgc gccagaggca ctccaaattt      2160
     ccctgtactc caggaaagtt ttaaagtagc gaggaagaca ctcaagaatg ccattaggga      2220
     cagcaaaagg gagtgttttc tcaggctgtg tgacaatgcg gataaggacc catggggcgc      2280
     cgcatataaa aatgtggtga agcggctgaa ttctggaggt agtcgtgtcc ccactgatgc      2340
     atcctcccta gccaccatag tagagacgct gtttccccag aaagccctgc ctactcttca      2400
     gagtctacca ccagacaccg atcctgagcg ccgccttatt ccagtctcgc ctgaggaagt      2460
     ggttctggca gccagcaaaa ttaagccaaa caaggctcct ggtcctgacg stattcccaa      2520
     tagggcaatc aaattggctc tcaacttaca ccctgagaag ttcgcatacc tktttacaag      2580
     atgcttcgag gaaggcactt ttccgagwca atggaagacg cagaagctgg tactgatccc      2640
     aaaaccagga aagcccccat cagacccctc agcgtacaga ccgatctgcc tcttggacac      2700
     agcaggcaag atccttgaag gcctaatagc cagccgtctg gaaacggcca ttgaaagggg      2760
     aggcggcctc gcccacacgc aattcggatt ccgcaagtcc cggtcgaccc tagacgctat      2820
     tggcatggtg gtggacattg cttccaaagc gatagagggc acgcggtgga aagggggtga      2880
     caaagagtac tgcctcattg ttacccttga catcaagaat gccttcaact cggctgactg      2940
     gggcagcatc ctgcgggcgc tttcagcgtt caacgtgccg aaccacctcc ttaacctcat      3000
     cagggattac ttccgagaaa gatggctaga agtagcaacc gacagtggaa ccacacggta      3060
     tcctgttagc gctggagtcc cccagggctc tgtcctcggc cctccactat ggaatgccat      3120
     gtatgacggg gtcctacgac tgccaactcc ccctcgaacg cgcctcatcg gcttcgctga      3180
     tgacgtggcc attgtcacag ttgagaaaaa catccacgag gcagaggagt catgcaactc      3240
     atgcatccgt tccatcatac gttggctgaa cgcggttggc ctggagctgg cagcccacaa      3300
     aaccgaggct gtgcttgtca gcagccgcaa aaccgttgag acggctcgga tcagggttgg      3360
     cgaccaagtt atcaactcca agcgagctat acgatacctt ggggtgatga tcgacacccg      3420
     tctatgcttc agagagcacc tggactttgt caacaggaaa gcggcggtgg ctgggcaagc      3480
     actctccaga ataatgctca actccagagg ccccaagcag cagagacggc agctattgat      3540
     gagcgtggta agggcaacca ttctgtatgc tgctccaatt tggcatacag ccctatctac      3600
     gccaagctac ttcagcggga tagccagcac ctaccgcctc tgcgcgctcc gggtctgctc      3660
     tggcttcagg acgatgtcgg acgatgccgc ccttgtgatt gcgggtatgg tgccaatcga      3720
     cctcctcgct agggaagctt tctccctacg ctcatccggc cctgcwacca gtgccgtamg      3780
     sacgaacctt cgtgcgctga gcatttcatc ttggcaaacc cggtggaatg cctcgacgaa      3840
     gggcaggtgg acccaccgcc tgatcccaga tctggcatsc tggatggaca ggaagcacgg      3900
     ccaggttaac ttcgacctgw cgcagatcct cagcgggcat gggtgcttcc gcggctacct      3960
     aaaaaggttt ggccacgaaa ccgtcagcga ctgcacgctg tgtggagcag gcatcgaaga      4020
     ggacgccgaa catgccttct tcgtttgcaa cagatttgca gcggcaaggc atgaagtcgg      4080
     cgtacaagtt ggtggagccc tctctccgga caccctgatc gcaaccatgc tgtcgagcga      4140
     gtcaaactgg gcgctgataa cggcctttgc tggccaagtt accaaagaat tgcgtagact      4200
     tgagcgcata agaagaggtg cctaactttg ggctttgccc ctgcgaagca atacttcgcg      4260
     gtcgtaccgc atgggctcat cccaaagttt agattagcat aattaaatta tactgtagtt      4320
     tatcctagag cactaatgaa ataaaaaaaa aaaaa                                 4355
//
ID   R1-5_DK     repbase;    DNA;    INV; 4553 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-4553
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1362-1362 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1756..4392
FT                 /product="R1-5_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="WAATSTHGXRIGGRPQPTPEAAPSLEAFASLDIALLN
FT                 EGTQQTFNRAGAGSIIDLTYASSALACQARWRISEIYTASDHEAILVSLGX
FT                 NPPRRSVPPSANKAYRQDTFNAQAFSGALAGLATDEADSANVAALKLAVAV
FT                 ERACDASMRQRKTFRRHHXPVYWWNDDIATXRSSCLRARRQAQRARGSPDL
FT                 PARSEAYKIARAALKKAIRTSKRECFLKLCDDVEDDPWGGAYKKVVKRVNA
FT                 GSKAPSDPEALEGIVRVLFPVGHPLHYPVSRESLEICPVSEQEIVLSARSL
FT                 NNKKAPGPDSIPNRATKMLLSLHPNVIAEIFNKCLAEGTFPERWKRQKLLL
FT                 LPKPGKPAGEASSYRPICLLDTIGKVFEKVIVARLEAAIERAGGLSSKQFG
FT                 FRKRKSTLDAIEMVTNLAANAIAGTRWKNGAKEYCLVVTLDIRNAFNSADW
FT                 RRTLEALEAFNIPGYLLRIIRSYFSERTLILDTSSGSRTHEVSAGVPQGSV
FT                 LGPLLWNTMYDGVLNLPLTANTTIVGFADDVALVVVAKELAEAESAANSAI
FT                 RAVESWLAVAGLELASHKSEAVLISSRKRVETAEIRVGGLPITSQRAIRYL
FT                 GVILDTRLCFREHLEYIHKKASETARSLSRILLNTRGPKQCRRKLLTSVIT
FT                 SQLLYAAPVWAEAAKVKSYVRGAEGTYRLSALRVACAFRTVSDEAALVIAG
FT                 LVPLGDLVQEAQEARLHSVPDNPTARREARRSARSRSVARWQDRWDRSTKG
FT                 RWTHRLIPDIKSWISRKHGEVDFYLTQALSGHGCFRSYLKRFGHDTEDHCP
FT                 ECGTGVEENAHHVLFDCHRFHHERQALEEAVGTAISVDNLVSTMLVSQVTW
FT                 DATAMFVASVLKTLRTMENERRTRAE"
XX
SQ   Sequence 4553 BP; 1136 A; 1299 C; 1354 G; 746 T; 18 other;
     aggccctaca caacattccc cgaagcactg acgtggctgt ggctgacttg gccgccacgg        60
     aagatactac gccaagccaa gaaaacaaga acgatggtcc catggaattc aggaggagca       120
     gcaggatcgt aagatccccg accctccctg cgagcaaggc tccgtcggac agcggaactg       180
     ctgcttcccc aaccccaaaa cggacacggg acgccgccag cccagcaggc tctcagcgag       240
     ttacgccgcc gaagagatgc agggcatccc agtgcctgga aaacattgcg gagttgggca       300
     agatcctgga cgaggtcctc cacgatatca acgtcaagca ggtcaagcag cgagggtgaa       360
     agacctgcaa gccaacatag gcgagtggct taactccgcc agcaaagaca gaggaaacgg       420
     atcgccctga acccgaagct acgtgtcaca aatgtagtgg tgggagtacc gtagagggca       480
     cccagagacg ggacgccgag caacagaccc acaaagtctg gtgcaaagat ggagcatcac       540
     atacggaggc ccagcgcgag tgcgaagcaa ttgcggcgcg ctcccatgcc gactggagcc       600
     attagttcgg acaaaccctc caccaaccgg tcaccaatgg ccaacgcggc caaacacagg       660
     gcccgaaccc accattgccc ataggcccga ctactggagg caccaaagca gaaggaagcg       720
     cctggagaac atttacgagg aaaaaagagg cgaaagaaaa acgatgctcc tcctcgatcc       780
     cggccggacg cagccatcat atctgcgaaa gggaagacgt acagtgaaat cctggccatg       840
     gtcacccgaa gcggaggcag ccacaacgaa ccacaaacgg caacctcttg ctggagatga       900
     cgaaggagag tgctgagagc gcagagtcca tgcgtacgtg cacagcgcag gtgctcggcg       960
     actcggcgga ggtgcgagcc atgccggagg actcgaaggt ggcagttctt gagatccgag      1020
     agttagacgc cctaactaag gagcccgagc tagtggctgc gatcgccgag caatacagcc      1080
     tggataaggc aaaggtcaag gtgcgaagca tccgcccggg atatgccgag tcccagacgg      1140
     ctgtaataag ccttccatgc tccctggcca aggcggtgct gaagagagga aaactacgca      1200
     taggttggtc ctcatgttcg atcagggaaa ggacgggccc cccaagatgc tatcggggaa      1260
     aagggccata aagctgcaaa gtgctctaac gagccaaaat gcttwatctg cgctgcktcc      1320
     ggmaagaagg agacgaggca ccagscaggc agcaaaagtt gcccgccaag gagctccagc      1380
     agcagtkkag ccggcccccg taatgcgtca tgcaattgat tcagctgaac ctgaatcatt      1440
     gcagggccgc gcaggacccg ctgatgcaga cagtgcgcga cctggacgtg gaggtggcgg      1500
     tgctcagcga gccatacaag gctcctagcw cacacggctg ggccacggac cgatccggca      1560
     aggctgcgct atgaatgtgt ggacgggaac acacccacct gtccgacgtc agatcggcgg      1620
     atggtttcgt tcgtggtaga gctggmgggg tgtgggtgta tagctgctac ctggctccga      1680
     gcctcaccct ggaggcgttc agcagcatca ttgamgcgct cggcgacgac atccggggac      1740
     gaagcaactc aatagtgggc ggcgacttca acgcatgggc mcaggattgg gggtcgcccw      1800
     caaccaacgc ccgaggccgc accatccctg gaggccttcg cttccctgga tatcgctctg      1860
     ctcaacgagg gtacccagca aaccttcaat agggcgggag cagggtccat aatcgacctt      1920
     acwtacgcta gcagcgcact agcctgccaa gccaggtgga gaatwagcga aatctacaca      1980
     gccagcgacc acgaggccat cctcgtttcc ctcggcgaka acccaccccg cagatcggtt      2040
     ccgcctagcg caaacaaggc gtaccggcag gacacgttca acgcccaagc gttctcgggt      2100
     gccctagcgg gcctagccac cgacgaagcg gacagtgcca atgtcgctgc gctcaagctg      2160
     gcggtmgcgg tcgagcgtgc atgtgacgca agcatgcggc aacggaaaac gttccgaagg      2220
     caccacamac ctgtctactg gtggaacgac gacatagcta ccmtacgctc atcttgcctc      2280
     cgagctagaa ggcaagccca gagagcgcgc ggctccccgg accttccagc ccgtagcgag      2340
     gcgtataaga tcgcaagggc tgccctgaag aaggcgataa ggaccagcaa aagagagtgc      2400
     ttccttaagc tctgcgatga cgtcgaggat gacccatggg gcggggcata caaaaaggtg      2460
     gtgaagcgcg tgaacgccgg cagcaaagca ccatcggacc cggaggccct ggaaggcata      2520
     gttcgggtgc tttttccagt tggtcatccg ctgcattacc cagtgagcag agagtccttg      2580
     gagatttgcc cggtctcgga gcaggaaatt gttttgtccg ctaggtccct aaacaacaag      2640
     aaggcaccgg gtcccgactc gatccctaac agggcgacca aaatgctgct ctccctgcat      2700
     cccaacgtga tcgccgagat ctttaacaag tgcctggcgg aaggtacgtt cccagagcga      2760
     tggaagcgac agaagctcct tcttctgccg aagccgggga agcccgcggg agaggcgtcg      2820
     tcgtacagac ccatctgtct gctggacacg atcgggaaag tcttcgagaa ggtgatcgtc      2880
     gcgaggctgg aggctgcaat agagcgcgcg ggcggactct cgtcaaaaca gttcggtttt      2940
     cggaaacgga aatcgactct ggacgccatc gaaatggtca ccaacttggc cgcgaacgcc      3000
     atcgcaggca caagatggaa aaatggcgcc aaagagtact gcctagtggt aacactggac      3060
     atccgaaacg cktttaattc tgcggattgg aggcggacac tggaggccct ggaagctttc      3120
     aacatccccg gttacctact gaggatcatc cgcagctatt tcagcgaaag gacgctcatc      3180
     ctggatacct cctcgggctc cagaacgcat gaggtctcag ccggagtccc gcagggctcc      3240
     gtcctgggtc ctctgctctg gaacacgatg tatgacggag tgcttaacct tccgctaacc      3300
     gcaaacacca ccatagtcgg ctttgccgac gacgtggcac tggtggtcgt agcgaaagag      3360
     ctggcagagg ctgagtcagc ggcaaacagc gcgatcagag cggtcgagtc ctggctggca      3420
     gtcgccggcc tagaacttgc ctcgcataag tcggaagcag tactgatttc cagcaggaag      3480
     cgcgtggaga cggccgagat acgggtaggc ggcctcccaa ttacctcgca gcgcgcgata      3540
     agatacttgg gcgtcatctt ggatacacgc ctctgcttca gagagcatct ggagtatata      3600
     cacaaaaagg ccagcgaaac agcaagatct ctctcccgaa tcctgcttaa taccagaggc      3660
     cctaagcagt gcaggaggaa gctcctcacg agtgtgataa cctcgcaact tctctacgca      3720
     gccccagtct gggcagaggc agcgaaggtc aaaagctacg tgaggggcgc ggaaggaacc      3780
     taccgcttga gcgcactgag agtagcgtgc gccttcagga ccgtctccga cgaagcggcc      3840
     ctggtcattg cggggctggt gccgctaggc gacctagtgc aggaagccca ggaagcccgc      3900
     ctccatagcg taccggacaa tccaacggca aggcgcgagg ccaggaggag tgccagaagc      3960
     agaagcgttg ccaggtggca ggacaggtgg gacagatcca ccaaaggccg ctggacccac      4020
     cgcctgattc cagacatcaa aagctggata agtcggaagc acggagaagt cgacttctac      4080
     ctgactcagg ctcttagtgg tcacggatgc ttcagaagct acctgaagcg attcggtcac      4140
     gacaccgagg atcactgccc agaatgcggg accggggtgg aagaaaatgc gcaccacgta      4200
     ctcttcgact gccatcgttt ccaccatgag cggcaggcgc tggaggaagc cgtgggtacg      4260
     gccatctcag tggacaacct ggtttccacc atgctggtca gccaggtgac ctgggacgcg      4320
     acagccatgt tcgtggccag cgtcttgaag accttgagga ccatggagaa cgagaggagg      4380
     acgcgagcgg agtaggcggc ctgcatatcg cgcgaagcaa tgcctagcgg cggtaccgcg      4440
     cgatacggcc ctctacactg tttctgtttg tccttcccag caaccctgtg ttacttatgt      4500
     agttatagtc ttaaatgtta tgtttttcaa ataaaagaat acaaaaaaaa aaa             4553
//
ID   R1-5_DMo    repbase;    DNA;    INV; 5527 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5527
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 5527 BP; 1537 A; 1291 C; 1443 G; 1256 T; 0 other;
     tctgcctcga ctccttatgc tgttaacatt tttattggta ttctttttat tcgaatactt        60
     tttcaatggc agggtataat gtttgtttaa ttgtttgtga aacagaagga gtcgtacaaa       120
     ttatatatat tttattaggg aaggcttttg tttcatgtat tctttcggaa gatgtaagag       180
     ctagagactt caaatttttt tttgaatgag tattttcatc gtgaataaag tatattaata       240
     acaagtaaga aagctctagt cgagactgct cgactacgag atcccctgaa cccttggagc       300
     aatagctatt tcaataattt ttcgcgtctt tcagcttaca caagaaacac gcacgcacac       360
     acacacacac acacacacac acacacacgc acgcacacac acatacacag gcatccacac       420
     acaaacggga gttcgagttg cgttttcacg gagtgcggtc gatgtcatcg tggtccatcg       480
     tagacaatag cttgaactgt gttttcccct gtgaaagtgg aaagaactga agtcaacgtg       540
     tttgctgtgg gcgcggcgta cccagcgacc tcaaaaaaac taccagagac ttactgcgcg       600
     gcggttcgtg gaattcccaa gcggtataat tcggtggtgc aagagagggg gggcgatagc       660
     gtcagtgttt tggcgtcagg gcttctttcc tttccttgtc ttttgtgggc gcgtaaattt       720
     tgttacttta ggcgtcacac ttgcgcaata agaaaaatca ggtgcattca ctctaacagc       780
     tgttagtagt gctggaaatt gcatcgggca atcagctgct cactaacgtt ggtgagttgc       840
     taagccttag caaagacagc aacctagctg ctggagtgaa gtagcagtta ttaaaagtag       900
     tgcatacttt cgggctctcg ctgtagtcaa gttgagttta agttactgcg ggttgtaaac       960
     tcagattata ttagtagcca ttgcccacta caggcttcac gccgtggtag tcggagcaga      1020
     aatggatgcc atgatggagg acgagctgca agcttttgcg cgtcgttcct cgttgcagcg      1080
     atcgccgcag caacaacaga gggtgttggc gcagccgtcg acttctaacc aggctccagt      1140
     ggctgagtgc caggcaccca agtcactaaa agaagcgtta gctcaaatag gagctacact      1200
     agagggtctg tctgccttat ttgggggtca gcggcatata aatgccttaa tgagagagga      1260
     gctggctagg ctggtcagcc ttcacaagac ggccgaagcg ttctgcaacc gttcggttaa      1320
     aaactgtgag gtgcagacca cgccactcaa aaaagtaggc gaaaacgtta aggcagcgag      1380
     cattagtgct acagtaggta gcaatactcc caagcggtcg agggaagttg cctccgaaca      1440
     gaggaaaact ccctcaaaaa agccgaggcc caatagaagt gcagcgaacc caaaagaacc      1500
     aatggctcta cgggctacag ctgaatctga aacttcaaac caggccgccc gacagacaaa      1560
     ccagagcagc tggacagtcg tcaaagggcg aaagcctatg caaaaacgtc ccaggactga      1620
     cgcgattgcg atttcaggcg tagggggttg cagctatgcg gacatgcttc gtgtagttaa      1680
     aagcgaccca aatttgaagc atctgagcag cgacgttcaa ggcattagga agacagctaa      1740
     gggggacctt ttactgcaac tgagtaggaa gccggagcat agcgctgagg ctctgcacga      1800
     agctgtaggc aaggccttgg gagaccgagc ggtagttaaa acacttaccg aatcggcgca      1860
     agttgagatt cgcgatctag atgagttagc gaccaaagag gagatcttgg aggcaattag      1920
     ggtggagttg aaggatagct cactccccat tgaggctatc aaatcgcttc ggccagcttt      1980
     tggtggacag caaagagcta cggttgctct tccaattggg aaagctaaaa ctctgctcga      2040
     gctgtccaaa attagaatag gatgggtagt ttgccgtatc cgagccgtgg agcagcctaa      2100
     acgctgtttc aagtgcctcg attacggtca tatggcagca aactgcggca gcgactgtga      2160
     cttaaagggc gcctgtttca ggtgtggaga aatgggtcac agtgccaaag catgcaccaa      2220
     gccaccaaaa tgtagcctct gcatccggaa aggtgaaaag cagacggacc attcagcagg      2280
     cagcttcaag tgcccatctt accgtgaagc tgctcgtaaa atgaaatgtt aaggtttttg      2340
     cagcttaact taaatcattg tgttgctgcc caagatcttc tagagcagac cattagggaa      2400
     aaatgtatag atgtagcttt tctcagtgag cctcaccact gtagaaccag ctgccctagg      2460
     acatggtcaa cagacgttaa tggcaaagct gcgttgtggg tatgcggcaa ctcaacgaac      2520
     gtactttcga atgttaagtc attcaatggg ttcgtacgtg gccgatatgg tagcttgtgg      2580
     ctttacagtt gctatctggc ccccagcatg cagctcagtg aattcacgac ggtgctcgac      2640
     gagcttgccg aggatgctag gggtcggaag gccattatag ctggagattt taactcctgg      2700
     gcgctagaat ggggtagccc aacaacaaat gccagaggtc gtatcctact ggagatcttc      2760
     gcgacactag atgttgcact gctcaacact ggccatgagt acaccttcag tcgggcggga      2820
     tacgggtctg ttatcgacat tacttttgtc acttcatccc tctttcgggg agcaacatgg      2880
     agccattgcg atagctatac aggcagcgat catacggcac ttctgttcac aataggtgag      2940
     ccacctgcca gggcgtcaac attgtggagg gagtcgtatc ggctagatac ttttgatccc      3000
     gcggtctttt cagaggccat tcagtctctg ggtacaattg gtaatgctga ggccagagca      3060
     tgccaaatgg tagcccaaat acagagtgcc tgcaatagca gcatgttacg ccgcaagcag      3120
     ttcacgcgac aacatgagcc tacgtattgg tggaatacgc aaataggtga cattcgtcgc      3180
     aaatgcatcc aggcgagaag aagctaccaa cgggctcgcg gtaggtcaac gttttttgag      3240
     aaacagttag cttaccaggc agctagaaga cagctgaaga aggccattcg ggcaagcaaa      3300
     agagaatgtt ttttacagtt gtgcgactca gccgaatatg acccttgggg cagggcatat      3360
     aagatagtag ttaaaagact atacgcaggt agacaggtgc agcctacgga tcgtctggag      3420
     cttaaatcga ttgtggaaac actctttcca gaaagtttaa gctccattca cgcccctgag      3480
     tccgagtctg ctgatcaggg ctcaacgagc actgaaattg ctgaaattgt tttagttaca      3540
     gaggaagaaa tatcagtagt tctccgaggt cttagaacca acacagctcc agggccggac      3600
     gggatcccaa atcgtgcgct aaagctagcc ctcgccttgc acccaagtac gttcgccgaa      3660
     ttatttaacg aatgcctgat ccaagagacg ttcccggcaa aatggaaagc ccagaatctg      3720
     gtattgctac ccaaggctgg caaaccacca gatgagccat cttcgtacag accgatctgt      3780
     ctcttagaca ccatgggaaa ggtgtttgag aaactgatct gctctaggct ggagactgcg      3840
     attgcaagcg ccggaggcct gtcaccaaac caatttggat tccggaaggc ccggtcaaca      3900
     acggacgcgc ttaacaaagt tgttggtctg gccacttccg ccattcaagg caccagatgg      3960
     aggcacggga cgaaggaata ctgcatcatt gcgaccctgg atgtaaggaa tgccttcaac      4020
     acagctagtt gggatatgat actgaatgcg ctgtcacaat ataatatccc taaatatcta      4080
     agagagataa taaagagcta cttcagagga agaacactgg tatacaacac gagtgagggt      4140
     ccccaaactc atacagtgtc agctggagta ccccaaggct cagtgctggg gcctctccta      4200
     tggaacatca tgtacgacgg cgtactgcgc ttggaactac cagcaggcgc gcacaccatt      4260
     ggctttgctg atgatgtagc tgtcgtagcc ataggaaagg agctcaaaga tacagaggat      4320
     atgtgcagcg aaagtatcaa tcgcatacga agctggttga caggagctgg gctcgagcta      4380
     gcggcacaca agaccgaagt tgtactagtc agcagtcgca aaagagtgga aactgccaat      4440
     ataaagatcg gcagcgtcac cattgcgtca aagagggcga taagatatct tggtgtcatg      4500
     atagacacaa gattaacttt ccgcgagcac ttagaatatg tgcataaaaa ggcagctgat      4560
     tcttgtagag ctctctcgag aatcatgctt aacacgcggg gacctaaaca gcaacgacgt      4620
     ctcctcctaa tgagcgtcat taggtctgtc atcctctatg ctgcgccaat atgggcaaga      4680
     gcgatggcaa cgccgagcta cagccgaggc atttgcgcga tctacaggct gagcgcaatc      4740
     agagtcagct gcgctttcag gactatctcc gatgacgcgg cgctcgtcat agccggtatg      4800
     gtgccactgg agtatttggt cgccgaagcc gtggagcgga attcgcacgg gcctacgcga      4860
     ctcaacgctg tcagggcgaa cagcatcgca cgatggcaaa gaaggtggaa tagctcagct      4920
     aaagggcggt ggacgcacaa gctcatcccg gagcttgaac catgggttaa ccgcaaacat      4980
     ggcgaggtta acttctacct tacgcagatc ctctcgggtc atggatgctt tcggagctat      5040
     ttgaagcgct ttggccacga ggaatctgac gagtgcccct ggtgcgagcg agggcatgtg      5100
     gaagacgcca accacattct tttcgaatgt ggacggttcc tggaggagag gcgtcgtctg      5160
     gaagaggcag tgggccgctc catcagagcg gacaacttag tcaacgccat gctggaatcg      5220
     gaggaagctt gggaactaac aagcaccttc gcggccacag tgatgatgga gctccgcaga      5280
     gtcgagcgac tgagaagacg agctgtccca ggctaaggta gcgcatagtg cttgcgaagc      5340
     aatgctttac ggccgtcccg caagcaccgc gcgctatcct agccaccaca caacttgcaa      5400
     tttgttttat tttgtcaata aatgaatata aaaaaaaaaa aaaaaaaaaa aacaaaaaaa      5460
     acacacatac acactaacac atacacaaac tttatacgca catacactga cacgcataca      5520
     cacgcat                                                                5527
//
ID   R1-5_DPer   repbase;    DNA;    INV; 5195 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5195
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1671-1671 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           711..2105
FT                 /product="R1-5_DPer_1p"
FT                 /translation="MAFQKASKVARTPPQAALAPPMKQSSLHSFASGATQD
FT                 GGKGTDTPKRPRDPPTPSSSGRKTPPKRSRNRXQDIDEIGAILDDLLYQMN
FT                 EKGQRSINMAIKKMVARMKELQVEVKSHLQAPEDKRAAPGGCQCHDHTAGP
FT                 TGPLPRMTKPSATKATQTASGAHKSEATPRTEEKSARGRPRQGHQADATRQ
FT                 EETKMQCGKAEDTNPTQKWSEVRGRRAKRKQTGRPDAVLVKCTEEASYADI
FT                 LKLVKAAPTLQNLKNKVQGIRKTASGELLLRMQQSSDPATQELQMAIQAAL
FT                 GDKAAVKAMQETVAVEVLNIDELTTGDEVCEAIAAAIDGDLTQGAVPYMRK
FT                 AYGATQVATLNLQPALAKKLLELGKVRIGWVVCRVRQRIAPTRCFKCMAYG
FT                 HTAARCRSKRPVSSNACYKCGGEGHKHNQCNNPPMCILCAGKPGDVRSAAH
FT                 SALSRSCPEYKKALAKLVDG"
FT   CDS           2101..5040
FT                 /product="R1-5_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVKLLQLNLNHCRAAQDLLAQTVLEQKIDIALLSEPY
FT                 GKKHEGVWQQSSDGGAAIWSCGPQPGQLTHRASRVGYVRAKHSGTFVYSCY
FT                 IAPRFTQQEYEAIISNIANDARGKSPVLIAGDFNAWATTWGSAKNTPRGTS
FT                 LLDEFASLNVCLLNTGTTPTFSKAGRESIIDLTFASPELARHAKWQVLSAY
FT                 THSDHLAVMTETFAPRNTTRIQRALQAGYKEESLSRAALLSAAENLSAAGD
FT                 AEASALAVYRTVKAACDAAMKKRKIGGSRHRPVPWWNEHIAKARRECCAAR
FT                 RAYQRARGSAQFGRNGAAFKAKRKELKEAIRSSKLKCFKELCDAADAEPFG
FT                 GAYKLVMGRLNRQPMPKDPVHMREIVGTLFPRQPPLQEEARVEGASLRDTT
FT                 TIITAREVLEATGKLKIGKAAGPDGVPNAALKCIIRAHPEAFATMYTQCLA
FT                 ERTVPRAWKRQRLVLIPKPGKELNDPSSYRPLCMLDTMGKIFERMVCNRLE
FT                 AELAERRGLSDLQFGFRKQRSTTDAIEMVTNLAREAMAGTRWAGGDKKYCL
FT                 VCTLDVRNAFNSASWKSILEALTRRGISEQITRTLRSYFTDRVLIYDTEEG
FT                 AEHHQITGGVPQGSVLGPILWNVMYDDILRLTLPEGCTLVGFADDIALVTV
FT                 SKHVRDAEEKTNVAVGMIVAWLAANGLALAEKKTEAVLMSSRKKVEQACVR
FT                 VGSTIIRTKPALKYLGVMMDQRLNFKAHLEYASAKATAATAAISRMMANTG
FT                 GPRQRSRQLIAGVVTSIILYGSAVWAPAMMVSTYSRDCRSAYRRCALRVTC
FT                 CFRTVSEDAALVVAGMVPLDLLAAERQSGVEVASERRERTIAQWQRRWDQA
FT                 AKGRWTRRLLPQLSPWLRRRHGQMDHYLGQLLTGHGCFKQYLHRFRHADDP
FT                 YCSCCGPGVDEDAEHVFFVCPRFSQERTRLGETLAEVSVDTLTDQMLADEQ
FT                 SWNAVAYMAASVIKELRRLERSRTN"
XX
SQ   Sequence 5195 BP; 1402 A; 1460 C; 1509 G; 821 T; 3 other;
     aaccgtgaat ttttcgagtg cggacgcgcc aaacagctgc tctgcaagac acagacaaat        60
     cgcgaaagat acctgaaaaa aaaatacmcg aaattagctc aagctcttgc tgacaccgcg       120
     tgctcacctg ggaggatcga gtctcacccc gactggcttc tgatccgggc tgcgcgttgc       180
     acttccacgg tcacccaaag ggggcagggg cgctggggcc caccgtgagt gctttggacg       240
     gcgcttttca ctcatcactt ggagattccc accttttttc atcctttctc tcctttgggc       300
     cggttctccc gttcttcttc actccaggcc tcgcagctga tcgactgggg taccagggct       360
     ggatagtgca ggccactaac cagctgatcg actgcagtgt ggtgaagggc actaggtgcc       420
     aaagcatcca gccctcgaca gagaccgctg cggaagataa ctgcgcccac agcagctagc       480
     ttctgtcagc gaccgcacct gagggaaggt actgcctaac tcctaggcgg gatcacttgc       540
     aaaccgcaca cacacaccta cgcataagtt ccatcccaaa ttcacacgcg tggaggaatc       600
     ccgtggccgg ggcgcggatc ctggaggccc tgagagatgt tcccccgaat cctgcttcgc       660
     cggtggcaca cttggccgac gaagcaaaat gcgctacaag ccaaggagca atggctttcc       720
     aaaaagcctc aaaggtggcc cgaacaccgc cacaagcagc tttagcaccg ccaatgaagc       780
     agagctcgtt gcacagcttt gccagtgggg ccacgcagga cggcggcaag ggcactgata       840
     ctccgaagag gccgagggac ccccctacac catcgagtag cgggagaaaa acccccccca       900
     agcgaagcag gaaccgckta caggacatag acgagattgg cgcaattctg gacgacctac       960
     tctaccagat gaacgagaag ggccagaggt cgatcaacat ggccatcaag aagatggtag      1020
     cacgcatgaa ggagttgcaa gtggaagtca aatcccatct gcaggcgcca gaggataaaa      1080
     gggcagcgcc aggaggatgc cagtgccatg atcacactgc aggcccaact ggccccctac      1140
     ccaggatgac caagcccagt gcgactaagg cgacgcaaac ggcatcagga gcccacaaga      1200
     gcgaggcaac accccgaact gaggagaaga gcgcgcgcgg aaggccccgg caaggccacc      1260
     aagctgacgc cactcgacaa gaggaaacca agatgcagtg cggcaaggcg gaagacacca      1320
     accctacaca gaagtggagt gaggtgagag gcaggcgtgc gaaacgcaag cagacaggcc      1380
     gaccagacgc agtgctggtc aaatgcaccg aggaggcatc atacgccgac atcctcaaac      1440
     tggtgaaggc agcaccaacg ctccagaacc tcaaaaacaa ggttcagggc atcaggaaga      1500
     cagcctcggg cgagctgctt ctaaggatgc aacaatcctc agaccccgcc acccaggagc      1560
     tacagatggc catccaggca gcgcttgggg acaaggcagc cgtgaaggcc atgcaggaga      1620
     cagtcgcggt tgaggtactc aacatagacg agctcacgac aggcgacgag gtatgtgagg      1680
     ccatagctgc agcgatcgac ggcgacttaa cacaaggagc agtgccgtac atgcggaaag      1740
     catatggcgc aacgcaggta gctacgctga accttcagcc cgcactcgca aagaagctcc      1800
     tggagctcgg aaaagttcgg atcggctggg ttgtctgccg cgtgcggcaa cggattgcgc      1860
     caacccgctg cttcaagtgc atggcctatg gacacactgc agccaggtgc agatccaagc      1920
     ggcctgtgtc aagcaatgca tgctacaaat gtggtgggga ggggcacaag cacaaccagt      1980
     gcaacaaccc gccaatgtgc atactatgcg ctggcaagcc aggagacgtc cgctcagcag      2040
     cccactcggc cctcagccgc agctgccctg agtacaagaa ggcactagca aaactggttg      2100
     atggttaagc tcctgcagct caacctaaac cactgccgag ctgctcagga tctgttggcg      2160
     caaacagtcc tggagcagaa gatcgacata gcgctactca gcgagccgta cggcaaaaaa      2220
     cacgaaggag tctggcagca aagctcagac ggaggagcag caatctggag ctgtggccca      2280
     caaccaggcc agcttaccca cagagcatcc agagtgggat atgtgagagc taagcacagc      2340
     gggacttttg tctacagctg ctacatagca ccaaggttca cgcagcagga gtatgaggcg      2400
     atcatcagca acatcgctaa cgacgcacga ggcaaatcgc cggtcctgat agcgggcgac      2460
     tttaacgcct gggccacgac ttggggcagc gccaagaaca caccccgtgg gacatcgctc      2520
     ctggacgagt ttgcaagcct gaacgtctgt ctcctcaaca caggaaccac accaacgttc      2580
     agcaaagcag ggcgggagtc tattatagac ctcacctttg caagcccaga gctcgcacgc      2640
     cacgcgaagt ggcaagtgct gagtgcttac acccatagcg accacttagc cgtaatgacg      2700
     gaaacctttg cacccaggaa cacaacaagg atacagcggg cgctccaggc cgggtacaag      2760
     gaggaaagcc tgagcagagc cgcgctcctc tcggcagcag aaaacctaag cgccgccggg      2820
     gatgctgaag catccgcgct tgccgtttac aggaccgtca aagcggcctg tgatgcagcc      2880
     atgaaaaaaa gaaagatcgg aggaagcagg caccggccag taccgtggtg gaatgagcac      2940
     attgccaagg ccaggaggga gtgctgcgca gctcggcgtg cctaccagcg agcaagaggc      3000
     tccgcccaat ttggcagaaa tggcgcggca ttcaaggcca aaagaaaaga gctgaaggag      3060
     gccatcagaa gcagcaaact caaatgcttc aaggagctct gcgatgcggc cgatgcggaa      3120
     ccttttggtg gagcatacaa actagtcatg gggagattaa acagacagcc tatgcccaag      3180
     gatccggtgc atatgagaga gatagtcggc acccttttcc ctagacaacc acccttacaa      3240
     gaggaagcta gggtagaagg agctagcctg agggacacca ccaccatcat cactgccaga      3300
     gaagtactgg aggccacggg taagctgaag atcgggaaag cggcaggtcc agatggagtc      3360
     cctaatgcag cactaaaatg cataattaga gcccatccgg aagcattcgc cacaatgtac      3420
     acccagtgcc tagcggagcg gacagtccca cgagcatgga aacggcaaag gctggttctg      3480
     atacccaagc caggcaaaga gctcaacgac ccatcgtcat accggccgct gtgcatgctg      3540
     gataccatgg gcaagatttt cgagaggatg gtatgtaacc gactggaggc ggaactggct      3600
     gagcgtcgcg gactttccga cctccaattc gggttccgca agcagaggag caccactgac      3660
     gccatcgaga tggtgacaaa ccttgccagg gaagccatgg caggaacgcg atgggctgga      3720
     ggcgacaaaa agtactgcct agtatgtaca ctagacgtac gaaacgcctt caactctgcc      3780
     agctggaaga gcatcctaga ggccctgacc aggaggggta tatctgagca aatcacacgg      3840
     actctgcgaa gctattttac ggaccgcgtc ctgatctacg acacggaaga aggagcagaa      3900
     catcaccaaa tcaccggagg cgtcccacag ggctcggtcc tagggccgat actgtggaac      3960
     gtgatgtatg acgatatcct gcggcttaca ttaccggaag ggtgcaccct ggtgggcttc      4020
     gccgacgaca tagcactggt gacagtgtcg aaacacgtaa gagacgcaga ggagaaaacc      4080
     aacgtagcag tcgggatgat agtggcctgg ctcgcagcca acgggctagc attggcggag      4140
     aagaagacgg aggctgtgct aatgagcagc aggaaaaagg tcgagcaggc atgcgtgaga      4200
     gtcggtagca cgatcatcag gaccaagcct gcgctaaagt acctaggggt aatgatggac      4260
     cagaggctga acttcaaggc ccacctggaa tacgccagcg caaaagcgac tgcagcaacg      4320
     gcggccataa gcaggatgat ggccaataca gggggaccac ggcagcgtag caggcagctc      4380
     atcgctgggg tggtcacctc tataatctta tatggatcag cagtgtgggc accagcaatg      4440
     atggtttcca catacagcag agactgcaga agcgcatacc gacgctgtgc cctgagggtt      4500
     acatgctgct tccggacggt gtctgaagac gccgcacttg ttgtggcagg catggtcccg      4560
     ctggatctcc tggcagctga gcggcagagc ggagtggagg tagccagcga gcggcgagag      4620
     cgcactatag cccagtggca acggcgctgg gaccaagcgg caaaagggag gtggaccaga      4680
     cgtctccttc cccagcttag cccatggctg cgaagaaggc acggccaaat ggaccattat      4740
     ttgggccaac tgctgacggg gcatggctgc ttcaagcagt acctgcatcg ctttaggcat      4800
     gctgacgacc cgtattgcag ctgctgcggg cctggagtcg acgaggatgc agagcacgtc      4860
     ttctttgtat gcccccgctt ctcgcaagaa cgaacgaggc taggggagac gcttgcagaa      4920
     gtgagtgtgg acaccctcac cgaccagatg ctagccgatg agcaatcttg gaacgcggtc      4980
     gcctacatgg cagcaagcgt gatcaaggag ctgcgcaggc tggagcgaag ccggacaaac      5040
     taagccagaa agatgacccc acagcccgca ccgcgaagta atgcctagcg gcagtcccgc      5100
     gggagcggac ccaccccccc cccccccttc ctagccataa ttgttatttt ataaatataa      5160
     attgtttwcc caataaaaaa aaaaaaaaaa aaaaa                                 5195
//
ID   R1-5_DSuz   repbase;    DNA;    INV; 5533 BP.
XX
AC   .
XX
DT   17-JUN-2021 (Rel. 27.01, Created)
DT   13-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila suzukii genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-5533
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 608-608 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~91% identical to
CC   that of R1-1_DBi from D. biarmipes.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..1883
FT                 /product="R1-5_DSuz_1p"
FT                 /note="zinc finger."
FT                 /translation="MSEGVDSMSEGEMRANGKRSQAKERENPKAKLIALDA
FT                 ESWANIVDTDKDWDVPEEDRPSSSASSAKGAKAKNVAPGEKKRSKGRSRAS
FT                 SKEASRAKEVQTIKTAADTAAAAAAAPAADAAAAPAADAAAAAAAAAAAAV
FT                 APAAGAAGAAAAAADKEGTFVAPARLKRSFSDREWGGNGAVAAEMGDIRAD
FT                 IMRMSRVASPTVGIKTQLLANRYEEXVGALXIRIGVLEDRLKWQTPVASAA
FT                 SYAATATRGAHPVASPAAPVAPLAPVAAPRKIRETWSAVVACDDPALSGKQ
FT                 IAEKIRKEVAPALGVRVHEVRELKRGGAIIRTPSQAEMTKVVASAKFAEVG
FT                 LKVSKNTAAKPRVTVQDVDTSVGPDEFMMELREKNFEEMSLKEFQKAVVLA
FT                 TKPWSAADGATINVTLEVDDQALAVLEGGRVYVKWFSYRCRSQVRTYACHR
FT                 CLGFDHKVSECRYPREKQVCRQCGQNDHVAAKCRNAVDCRNCRHKGMPSGH
FT                 YMLSGGCPIYGALLARVQAKH"
FT   CDS           1889..4975
FT                 /product="R1-5_DSuz_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSFIQANCGRGRCAVIELAKQMRDAGHLFALVQEPY
FT                 VDAGKRLTGLPGGMRIFADRRKKAAIIVDDPSAICMPIDALTTDYGVCVSV
FT                 TGRYGTIFLASVYCQHLAALEPYTDYLDTVLLLASRTPTILGLDANAVSPM
FT                 WFSKSPDNSGDRLSRERGQLMNEWIIASGASVLNTASQVFTFDNHRSRSDI
FT                 DVTFVNEAARVWATYDWRVDFWELSDHNIITVEVTPDPSSTVESLAPVPQW
FT                 KLSNASWRRFSVELRSAAQSLEELEESPLDDHVSALRSIVHEVCDRVIGRR
FT                 IPAARGNVIWWNPELSTKRQEVRRLRRRLQAARRSGTDDAEQLAAGLRFAS
FT                 GQYKKLILTTKEQNWRDFVGRHNDDPWGHVYRICRGRKKTTDLGCLRSNGA
FT                 LSVTWHDCANMLLRNFFPVAESTARDDLPPGAPPILEAFEVATSVAKLRSR
FT                 RSPGMDGITGGIVKEVWRAIPQHLTKLYSRCLSEGYFPAEWKHPRVIPLLK
FT                 GPDKDRSDPASYRGICLLPVFGKALEGIMVNRLKDVLPDGCRWQFGFRPGR
FT                 CVEDAWMHAKNTVANSRERRVLGIFVDFKGAFDNVEWSAVLDRLVEVGCRE
FT                 IDLWKSYFSGRSASIISRYEAATVAVTRGCPQGSVSGPFIWNLLMDVLLHR
FT                 LEPHCALSAFADDLLLFVDGNSRADLERKGEQLMDIVGAWGAEVGVSVSTS
FT                 KTAIMLLKGQLSRTRRPTVRFAGASLPYVTKYRYLGILVGERLSFLPHISA
FT                 LRDRLAGVAGGLARVLRVDWGLSSRAKRTIYSGLMVPCALFGASVWYKAAS
FT                 RGKSLKLLTSCQRSILLGCLPVCRTVSTVALQVLAGAPPMDLDAHRIAVKF
FT                 KLRKDVPLDESDWLHGQDLSVLDWKAKMALLDERLLNEWQIRWDRAEHGSV
FT                 TREFFPEAAFIYNRKDFVFTLKAGFLLTGHGSMNAFLQGRTLSTTTACSCG
FT                 VAREDWRHILCECRLYNDLRDLDALGVVQDHGRWIVAGVVETPERMRLLGV
FT                 FADAAFSRRRMDAMRDEPQAPGR"
XX
SQ   Sequence 5533 BP; 1221 A; 1419 C; 1711 G; 1177 T; 5 other;
     gtcaactggc agtgtaagga gagattcaag tatcgtacct gattattttg ctctgttcga        60
     aaattcgttt tttcgcgttt cctcaaaagt tamattggcg gaagtggtgt cagagtccgt       120
     ggttcggctg cgcggtcgag gagtgttgst cgcgtgatca tacatacgcc ggaggcggcg       180
     gaatacgcgt tttccttttg tgaacaattg aaagcatttt tggtaattta ttttgtttga       240
     aaaaaatttg aatcgagctg aaaaggctac ttggccttaa caaaaactgg gtgagtgtat       300
     ttttgagtcc tatttttaac accaccaaag agatgtcgga gggggttgat tcgatgagcg       360
     agggcgagat gcgcgccaat gggaagcgca gccaagctaa ggagcgagag aacccgaaag       420
     ctaagttgat tgcgctcgac gcggaatcgt gggccaatat tgttgacacg gacaaggact       480
     gggacgtgcc agaagaggat cgcccctcat catctgcatc gtccgcgaag ggggctaagg       540
     cgaagaatgt tgcacccgga gaaaagaagc gctcmaaagg acgttctagg gcgtcatcga       600
     aggaggcatc gcgcgctaaa gaggtgcaga ctatcaagac cgccgctgac actgccgctg       660
     ccgcagccgc tgcccccgcc gctgacgctg ccgctgcccc cgccgctgac gctgccgctg       720
     ctgctgccgc agccgctgcc gctgccgtcg cccctgcagc tggcgctgcc ggtgccgctg       780
     ccgctgctgc cgataaggaa gggaccttcg tggcacctgc cagactgaaa agatccttct       840
     cggacagaga gtggggggga aacggtgccg ttgctgccga gatgggcgac atccgtgcgg       900
     atattatgag gatgtcccgc gtagcaagcc ctaccgtggg catcaagacg caattattgg       960
     caaaccgcta cgaggagmtc gtcggagccc tgmtgatccg gattggagtt cttgaggatc      1020
     gcctgaagtg gcagacaccg gtcgcctcgg ccgcctcata tgcagccacc gctactagag      1080
     gcgcgcaccc agtcgcctca cctgctgccc ctgttgcccc ccttgccccc gtagccgcac      1140
     cgcgaaagat ccgggagaca tggtcggcgg tcgtcgcgtg cgacgacccg gccttgtcag      1200
     ggaagcagat cgcggagaag atccgcaagg aggtagcgcc cgctctgggc gtacgagtgc      1260
     acgaggtgcg tgagctgaag cggggcggcg cgatcattcg cacgccttcg caggcggaga      1320
     tgacgaaagt cgttgcctcc gcaaagttcg ccgaggtggg cctaaaggtg tcgaagaaca      1380
     ccgctgcaaa gccacgtgtg acggtccagg atgtggacac ctccgtggga cccgacgagt      1440
     ttatgatgga gctcagggag aagaacttcg aggagatgag cctgaaggag ttccagaagg      1500
     cggtggtcct ggcgactaag ccctggtcag ctgctgacgg cgccacaatt aatgtgacgt      1560
     tggaggtcga tgaccaggcg ctggccgttc tcgaaggcgg gagggtgtac gtcaagtggt      1620
     tttcttaccg ctgtcgctct caggtgcgca cctacgcctg ccaccgatgc ctcggatttg      1680
     accacaaggt cagcgagtgc agataccccc gagagaaaca ggtctgccgc cagtgcggac      1740
     agaacgacca cgtcgcggcg aagtgcagaa atgcggtgga ctgccgcaac tgccgtcaca      1800
     agggtatgcc ctcggggcat tatatgcttt cgggtggctg cccgatatac ggcgcgctgc      1860
     tagccagggt gcaagctaaa cattaataat gtttagcttc atccaagcga attgtggtcg      1920
     aggccgttgc gctgtcatcg agcttgccaa gcagatgaga gatgctggcc acctgttcgc      1980
     actagtccag gagccctatg tggacgcggg caagcgacta actggactgc ctggaggaat      2040
     gaggatcttc gccgatagga ggaaaaaagc tgccatcatc gttgacgacc catctgccat      2100
     ctgcatgccc atcgatgctt tgacgacgga ctacggagtg tgcgtgagtg tcacgggaag      2160
     atatggcacc atctttctgg cctccgtata ctgccagcat ctagctgctc tggagcccta      2220
     tactgactac ctggatacgg ttctgctatt agctagtaga acaccgacaa tcctcggact      2280
     tgacgccaac gcagtttccc ctatgtggtt cagcaaatcc ccagacaact ctggagaccg      2340
     cctgagtcgc gaacggggac agctcatgaa cgagtggatt attgcaagcg gtgccagtgt      2400
     gctgaatacg gccagccagg tgttcacgtt cgataatcac cgctccagaa gtgatatcga      2460
     cgtgaccttc gtcaacgaag cagcgcgagt atgggcaaca tacgattgga gagttgactt      2520
     ctgggagctg agtgaccaca acatcattac tgttgaggtt actccagatc cgagcagtac      2580
     cgttgagagc ctagctccgg taccgcaatg gaagctctcc aatgcaagtt ggcgaagatt      2640
     cagtgtagag ttaaggagtg cagcacaaag ccttgaggaa ctggaggaat cgccgttgga      2700
     cgaccatgtg tctgcccttc gctccatcgt acatgaagtg tgcgacaggg tgatagggcg      2760
     caggatacct gcagcaaggg gaaacgtaat atggtggaat cctgagctga gtaccaagcg      2820
     ccaagaggtc cggagactga ggcgtaggct gcaggcagct cgccggagtg gcaccgacga      2880
     tgctgagcaa cttgccgctg gactgagatt tgcctcaggc cagtacaaga agcttatctt      2940
     gacgacaaag gagcaaaact ggcgggactt cgtgggacgg cacaatgatg atccatgggg      3000
     gcacgtatac cgaatatgcc gaggccggaa gaagacaacc gatctcggat gtctccggtc      3060
     gaacggcgcg ctttccgtaa cgtggcacga ctgcgcaaat atgctcctcc gcaacttctt      3120
     ccctgttgcg gagtcgacag cacgagatga cttaccccct ggtgccccac cgatcctcga      3180
     agccttcgag gtggctacca gcgtcgcaaa gctgagaagc cggcgatcgc cgggtatgga      3240
     tggcatcacg ggcggtattg tcaaggaggt atggcgtgcc atcccccagc acctgacgaa      3300
     gctgtactct cggtgcctct cggaaggata ctttccggcc gagtggaagc acccgagagt      3360
     gataccgctg ttaaaggggc cagacaagga caggagcgat cctgcctctt atcgtggcat      3420
     atgccttttg ccagtgttcg ggaaggcgct ggaaggaatc atggtgaatc gactgaagga      3480
     tgtgctaccg gatggctgca gatggcaatt cggattcagg cctggacgct gtgtggagga      3540
     tgcgtggatg cacgccaaaa acaccgtcgc caacagccgc gagaggagag tccttggaat      3600
     ctttgtcgac ttcaagggag ctttcgacaa cgtggagtgg agtgcggtgc tggatcggct      3660
     tgtcgaagta ggctgtcgag aaatcgactt gtggaaaagc tatttctccg gccggagcgc      3720
     aagcatcatc agcaggtatg aagcggccac agttgcggtt acacgtggct gcccgcaagg      3780
     gtctgtcagt ggtccattta tttggaacct actgatggat gtgctgcttc atcgcttgga      3840
     gccacattgt gctctgagcg cgtttgcaga tgatcttctg cttttcgtcg atgggaattc      3900
     ccgtgccgat ctggagcgga agggcgagca gttaatggac atcgtgggag cctggggagc      3960
     tgaggttgga gtgagtgtgt caaccagcaa gacggcaata atgttgctga aaggacagct      4020
     ttcacgcacg aggagaccga cggtacggtt tgctggagca agcctgcctt acgtcaccaa      4080
     ataccggtac cttggcatct tagttggcga gcggttgagc tttctcccgc atatctctgc      4140
     tctcagagat cggctggctg gagttgccgg aggactagcg cgggtgcttc gagtcgattg      4200
     ggggctcagc tcccgtgcta agaggacgat ttacagcgga ctcatggttc cctgtgcact      4260
     ctttggtgcc tcggtctggt acaaggcggc gagtaggggc aagtccctta aactcctcac      4320
     ctcgtgccag aggtccatcc ttttaggatg cctaccggta tgccgcacag tgtccacggt      4380
     ggcactgcag gtgcttgctg gtgctcctcc aatggatctg gatgctcaca ggatcgccgt      4440
     gaagttcaag ctgaggaagg atgtccccct ggatgagagc gactggctcc acggacagga      4500
     cctgtccgtg ttggactgga aagctaagat ggcgctgcta gacgaacgtc tgctaaatga      4560
     gtggcaaatc agatgggatc gcgcggaaca cggctccgtg actcgcgagt ttttcccaga      4620
     ggcagcgttc atctacaaca ggaaagactt tgtctttacc ctcaaagccg gattcttgct      4680
     gacaggacac gggtcgatga acgcatttct gcaaggcagg accctcagca ccacgaccgc      4740
     atgctcgtgt ggcgtggcaa gagaggactg gcgccacata ctgtgtgaat gccgcctgta      4800
     taacgatctg cgggacctgg atgccctcgg agtcgttcaa gaccatggaa gatggatcgt      4860
     cgcgggagta gtcgagaccc cagaacggat gcgtctccta ggagtttttg ccgatgctgc      4920
     cttctcgagg cgaaggatgg atgcgatgag ggatgaacca caggcgccgg gacgttagtc      4980
     cctcccctct tttgccgtgt ggtagcggcg aagaatactg ccacagcctg ccatagcttg      5040
     tcgtaggagg cgactaatat ggcaatggtt gccccatccg agcttgtcgg agctgaaggg      5100
     gtgaggctca ccgagcctgt aatttcggta ccacgggttg agcagctcca agactgctca      5160
     ttgaggttgg cccccttgtg ggagtatcgt ggtggctgtg gttgacacct atatcgcggg      5220
     tagagtcctc gggctcgacg tggatgttgc gtaatacaac tcgggtgctg tgacccatag      5280
     aacggtagag attttagata gatctcgccc ctacgcaagg gggagtgctt gcccgacaag      5340
     taagtactcg aattgctact ggggtggttg ctatgtacat agctatagct gctagtccag      5400
     ggcgttggtt tggcgctgaa cctagacccg tgcattatat actcacttgt gggtatatta      5460
     gaatgccgtg gttgtaatcc cttcattgtg gaacacgcca cgtaaaataa gttcggaggg      5520
     atccgagaca cac                                                         5533
//
ID   R1-5_DTa    repbase;    DNA;    INV; 5562 BP.
XX
AC   .
XX
DT   25-JUL-2021 (Rel. 26.10, Created)
DT   26-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5562
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5918-5918 (2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence. 99% identiclal to another
CC   partial copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           432..1880
FT                 /product="R1-5_DTa_1p"
FT                 /translation="MSSAMDTIESGSESASSRSSSATGRGRGRPRGKRGHQ
FT                 GKTRDASRAKVPAVDGASGGPEPVVEEDLDSLEMPPPPAPAGRPVAAPGHT
FT                 PDNDATASAAARIADAAAARIAAAAAGAEVVVPSPVAHKSEDFAMEVVKAG
FT                 SGRVAEELAAIREAFVLHSAARLSQSAIKEVMSITARYEALISALNVRNAV
FT                 LEDRFKQSVKTLPPPPQRPVPAATAPSYSAAYPSLPQPSAAPVPLPRKPRE
FT                 TWSAVVHSADPNISGKQLAEKVRKEIAPALGVRVHEVRGLARGGAVIRTPS
FT                 SGELKQVMANKKFQEAGLQISRTPQLKPRIEIRDVDTAHKPEDFMAELYKN
FT                 NFADRMELAEFKKAVRLEKPWSQANGATVTVTLEVDPVGLDVLDGAKAYIG
FT                 WFAYNCRALVRTYACHRCVGFDHKVASCRMSEKDKVCRQCGQVGHSARGCP
FT                 NPVDCRNCRFKGYPSAHHMLSAGCPVYAAVLARVNARH"
FT   CDS           1886..4984
FT                 /product="R1-5_DTa_2p"
FT                 /translation="MFSFIQANCGKGRAATIELGVRLRESRCLFALLQEPY
FT                 VDVSNGRMDELPEGIRSFTDRKGKAAILVNHQDVICMQVEPLTTDYGVCVK
FT                 IIGGFGSILLCSAYCQFDGDLPLYLTYLDAVLLLASRTPAILGLDANAASP
FT                 MWFSKLPPNAEGLANYNRGELLSLWIVEKGAAVLNQPSSVYTFESMNGRSD
FT                 IDVTIANTAGSMLATYEWRVDNWELSDHNIITVVANLTTDTAVESLAPVPS
FT                 WNFSNARWRLFEQEMVSRAAELPEDFSESPLDQQVSTLRRIVHEVCDLVLG
FT                 RRTAGSPRSRPGWWTADLSAMRRDVRRLRRRLQDARRRRHDDVAELIVVEL
FT                 RRTSAAYKKLILRTKEDSWRRFVGENSHDPWGRVYKMCRGRKKRTEIGCLR
FT                 VNGELVTNWGDCARVLLRNFFPVAESDAPIAIAEELPPPLEVSEVGACVAR
FT                 LKSKRSPGMDGINGTICKAVWRAIPQHLTAIYSNCIRSGYFPAEWKCPRVV
FT                 ALLKGPDKDRCEPSSYRGICLLPVFGKVLEAIMVDRVREVLPEGCRWQFGF
FT                 RQGRCVEDAWMHVKSSVHASPARYVLGIFVDFKGAFDNVEWSAALRRLAEL
FT                 GCREMSLWQSFFSGRSAEIRSSYETVNVPVTRGCPQGSISGPFIWDLLMDV
FT                 LLRRLESYCTLSAYADDLLLLVEGNSRLALETKGAQLMSIVETWGMEVGVA
FT                 VSTSKTVIMLLKEPRKLLARGPNGVLRRTPAVKFAGANLPYVSSCRYLGIT
FT                 VSEGLKFFEHVRNLRQRMAGVVAALARVLRADWGLSPRARRTIYAGLMVPC
FT                 ALFGASVWYVTTTRQEVAREHLIACQRLILLGCLPVCRTVSTVALQVLAGV
FT                 PPFDLAAMQMAVKYKLKRGYPLEDYDLLYSEDLTGLSWEEKMVRMEQCLLH
FT                 RWQDRWDDVDASGRVTYKFISDVTFAFRNPHFGFPMRTGFLITGHGSLNAF
FT                 LYSRTLSDSAACSCGDPFEDWQHVLCDCPLYADLRDLDGLGVQRNGENRTF
FT                 GRILEDEDRTRRLNVFADEAFRRRRDF"
XX
SQ   Sequence 5562 BP; 1199 A; 1387 C; 1716 G; 1260 T; 0 other;
     atagagatag atgtacctct taaggtagcc aactgaacgg acgtgctttt agtcgtgctg        60
     cttagagtcg ggtattttcg tgagtttcgg cgctggaaag cgttttaaaa tttgcggttt       120
     gtgaaggtga acggctggtt gtgagaatcg agttggaaaa gtgaggataa gggtggaaat       180
     tcgcagtttt tcgaattggg aattttccat tgcgccacgt gcgttgagag agtgcgctct       240
     cgcgagtgct ctctggagag aggcgttagg cacaagtgcg ggatttctct cgtacgatca       300
     gctgtgctag cgggagtgtg tacggactaa gtggttggtg ccattgctaa gtgctgccag       360
     atcgctggaa atataatttg gtgagttact ttactaagtt atatttttgg gtggttgttt       420
     gttgccgata gatgtcgtcc gcaatggaca ccatcgagtc cggaagcgag tcggcgagca       480
     gtcgcagtag cagcgctaca ggtcggggta ggggtcgccc tagagggaaa cgcggccatc       540
     aggggaagac ccgcgatgcg tcgcgagcca aggtgccggc tgtggatggg gcctctggtg       600
     gcccagagcc cgttgtcgag gaggatcttg attctctcga gatgccgccg cctcctgcac       660
     ccgctggtag gcccgttgcc gcccctggcc atactcctga caatgatgcc accgcatctg       720
     ctgccgcaag gatcgcggat gctgctgccg ccaggatcgc cgctgccgcc gctggagctg       780
     aggtcgttgt cccctcgccc gttgctcaca aatcggagga ctttgccatg gaggttgtaa       840
     aagcaggctc aggccgcgtc gctgaagagc tggcggcgat aagggaggca tttgtgttgc       900
     actccgcggc ccgcctctca cagagcgcca tcaaggaagt gatgagtatc acagcgagat       960
     acgaggcgtt gatttccgcg ctgaatgttc ggaacgccgt gcttgaagac cgctttaagc      1020
     agtcggttaa gacgctcccg ccgccacccc agcgaccggt tcctgctgcc accgcgccgt      1080
     cttattcagc tgcataccca agcctgcccc agccctctgc tgcaccggtc ccactgccgc      1140
     gtaagccgcg ggagacctgg tcggcagtcg tgcacagcgc ggacccgaat atctcgggga      1200
     agcagctcgc tgagaaggtg cgaaaggaga tcgccccagc gctgggtgtt cgcgtgcacg      1260
     aggtgcgagg actggcacgt ggtggtgcgg ttatacgtac cccgtcgtca ggcgagctga      1320
     agcaggtgat ggccaacaaa aagttccagg aggctgggct gcaaatcagc aggaccccac      1380
     aactgaagcc gaggatagag atccgggatg tggacaccgc ccacaagccc gaggacttta      1440
     tggcggagtt gtataaaaac aactttgccg acaggatgga actggcggag ttcaagaagg      1500
     ctgtgcgtct ggaaaagccc tggtcgcagg ccaatggcgc cacggtgacc gtgacgctgg      1560
     aggtcgaccc agtgggcttg gacgttctcg acggagcaaa ggcatacata ggatggtttg      1620
     cctacaactg ccgtgccttg gtacgaacct acgcctgcca caggtgtgtt ggtttcgacc      1680
     acaaggttgc gagctgcagg atgtccgaga aggacaaggt gtgccgacag tgcgggcagg      1740
     ttggccacag tgcgcggggc tgtcccaacc ctgtggactg ccgaaattgc cgcttcaagg      1800
     gctacccgtc agcacatcac atgctgtctg ctgggtgccc tgtgtatgcg gcggtgctgg      1860
     cgcgggtgaa tgctagacac taaccatgtt tagcttcatc caggcaaact gtggcaaagg      1920
     acgagctgcg accatcgagc tcggagtccg attgcgtgaa agcaggtgcc tgttcgcact      1980
     gttgcaggag ccctacgtcg atgtgagcaa cgggaggatg gatgagctgc cggaaggtat      2040
     caggagcttt accgatagga aaggaaaggc agccatccta gtgaatcacc aggatgtcat      2100
     ctgtatgcaa gtggagcccc tcaccacgga ttacggcgta tgcgtgaaaa ttataggagg      2160
     atttggctca atccttctat gctccgcata ttgccagttt gatggcgact tacccttgta      2220
     cctcacgtac ttggatgcgg tcctgctgct ggccagcaga actcccgcaa tccttggcct      2280
     tgatgcgaat gcagcatccc ccatgtggtt tagcaagctt cctcccaacg cggagggact      2340
     tgctaactac aatcggggtg agctgctgtc tctgtggatt gtggaaaagg gagctgcggt      2400
     tctaaaccag ccaagttcgg tgtatacgtt cgagtccatg aacggacgga gcgacatcga      2460
     cgtgacgatc gccaacactg caggatctat gctggccaca tatgagtgga gagtggacaa      2520
     ttgggagtta agtgaccaca acatcattac tgttgtggcc aacttgacga ccgatacagc      2580
     cgttgagagc ctagctccgg tgccgtcctg gaacttctcc aatgcacgtt ggcggttgtt      2640
     cgagcaggaa atggtgagta gggcagccga acttccggaa gacttctcag aatcgccgct      2700
     ggaccaacaa gtctctaccc ttcgcaggat cgtccacgaa gtgtgcgatc ttgttttggg      2760
     taggaggacg gcaggatcgc cgagatccag accaggttgg tggaccgctg acctaagcgc      2820
     gatgcgccgc gatgtcagga gacttaggcg ccgtcttcag gatgccagac gtcgtcgtca      2880
     cgatgacgtg gccgagctaa ttgtggtcga gctgagacgt acctcagccg cctacaagaa      2940
     gctcatcctg aggacaaaag aggacagctg gagacgcttc gtgggagaaa attcacacga      3000
     tccctggggg cgcgtctaca agatgtgccg aggtcgcaag aaacggacgg agattgggtg      3060
     ccttcgcgtt aatggcgagc tggtcaccaa ttggggtgac tgtgcgcgtg tgctcctccg      3120
     caacttcttt ccggttgcgg agtccgatgc accgattgcc atagcggagg aactcccacc      3180
     gccactggaa gtttctgagg ttggtgcttg tgtcgccagg ttgaagagca aacgctcgcc      3240
     tggcatggac ggcatcaacg gaacgatttg caaggctgtg tggcgcgcca tacctcagca      3300
     cctaacggcg atatattcca actgcatccg gtcggggtac ttccctgcag agtggaaatg      3360
     cccacgtgtt gtggctctgc tcaagggacc cgacaaggac aggtgtgagc catcgtcgta      3420
     ccgcggaatt tgcctacttc cggtcttcgg taaggtgcta gaggccataa tggttgatcg      3480
     tgtgagagaa gttcttccgg aaggctgcag atggcagttc ggttttcgtc aaggacgttg      3540
     tgtggaggat gcttggatgc acgtgaagag cagtgttcac gccagcccgg cgagatacgt      3600
     gctcggcatt ttcgtggact tcaagggagc cttcgacaac gtggagtgga gtgctgcact      3660
     gcgccgattg gccgagttgg gatgccgaga gatgagcttg tggcagagct tcttctccgg      3720
     caggagcgca gaaatccgaa gcagttacga gaccgttaat gtcccggtaa ctagaggttg      3780
     tccgcagggg tcaatcagcg gcccatttat ttgggacctg ctgatggatg tactgctacg      3840
     acgccttgag tcgtactgca cactgagtgc gtacgcggat gatctgctgc ttctcgtcga      3900
     gggaaactcc cggctcgcgc tggagacaaa aggagcgcaa ctaatgtcca tcgttgaaac      3960
     gtgggggatg gaagtcggcg ttgccgtttc caccagcaag acggttatta tgctgctaaa      4020
     ggaaccaaga aagctactcg ctcgtggccc gaatggagtg cttcgacgca cacctgcggt      4080
     aaaatttgct ggagcaaact taccgtatgt tagcagctgc cggtaccttg gcatcacagt      4140
     cagcgaaggc ttgaaattct tcgagcacgt cagaaatctc cgacagcgta tggctggagt      4200
     cgttgcagca ttggcgcgtg tgcttcgagc agactggggc ctcagtcctc gagccaggcg      4260
     gaccatttat gccggactca tggtgccctg tgcactgttt ggtgcctcgg tatggtatgt      4320
     cactacgacg cggcaagaag tggccagaga gcacctcatt gcctgccaga ggcttatcct      4380
     tcttggatgc cttccggtat gccgaacagt gtccactgtg gcactgcagg ttcttgctgg      4440
     cgttcccccg tttgatttgg ctgctatgca aatggcagtt aaatacaagc ttaagcgtgg      4500
     atacccgttg gaggattacg atctgctgta tagtgaagac ctcactggtc taagctggga      4560
     agagaagatg gtgcgtatgg agcagtgcct actgcacaga tggcaagaca gatgggatga      4620
     cgtagatgca tccggacggg tgacctacaa gttcatttca gatgtgactt ttgcatttcg      4680
     gaatccacac tttggattcc cgatgcgcac cggattttta atcacaggac acggatcgtt      4740
     gaacgcattt ctgtatagca gaacgctctc ggactctgcc gcatgctcat gtggcgatcc      4800
     atttgaggat tggcagcacg tcttgtgtga ctgccccctc tatgcagatt tgcgcgacct      4860
     cgatggactt ggagtgcagc gaaatggcga aaaccgaacg tttggaagga ttctggagga      4920
     tgaggacagg actcgacgac tcaatgtgtt tgctgatgag gcgttccgca ggagaaggga      4980
     cttttagtcc atttactctg ctgtgtggct agcggcgaag aatactacca cagcttgtca      5040
     tagcttgtcg taggaggcga ctaatatgac atgggtgccc tatccgagct tgtcggagct      5100
     taaggggtga ggcctaccga tcctgtaatt tcggtaccac gggttgagca gctgtccaag      5160
     gctgctcatt gaggtcggcc cccatgtggg agtatcgtgg tggctgtggt tgacacccat      5220
     atgcgggtag agccttcggg ttcgacgtgg agttgcgtca tacaactcgg gtgctgtgac      5280
     ccaaagatca gtagggattt agatagatcc cgctcctcag caagggggaa tgcttgcccg      5340
     acaagtaagc attcgaattg ctaccggggt ggttgctatg tacatagcta tagcttctag      5400
     tccggggcgt tggtctggcg cttaacctag acacattgca ctatacactc acttgtgggt      5460
     gtataagagt gccgtggttg taatcccttc agtgtggaac atgccacgtt aaataagagc      5520
     ggagggatcc gattcacaca cactgtccct atctactatc ta                         5562
//
ID   R1-5_DWi    repbase;    DNA;    INV; 3830 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3830
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1966-1966 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with ~99% identity.
CC   This family shows no target site specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           66..695
FT                 /product="R1-5_DWi_1p"
FT                 /translation="MTKCARLALMYARQEMNKPMAENXQKLTKDIEVALGA
FT                 QIEAKALSDFIKLDVRDLDEMVSKDELAAEFSSQFGVQITTLAIKSLRPAF
FT                 AGTQRATISVQAALAKDILNVGRIKIRLNESRIRIDNTPVRCFRCHEFGHV
FT                 SAQCKCQEDRSDWCLRCGEKRHKARGCKNAAKCFLCTANGIKEAGHVAGSQ
FT                 RCPYGPRCGQNALTKNVNHG"
FT   CDS           619..3678
FT                 /product="R1-5_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLPGASVVLMGPVVARTLLQKMLIMVKFMQINLNHCE
FT                 AAHDMLKQTTREQNIDVVIVSEPYRLHGGNNTTCSTQRKAAILLTSVRPLQ
FT                 MSQTRAFAHFVRAKIDRFWVYSCYMPPSINHQEFCAALDELATDARSHSPL
FT                 IIAGDFNAWSLEWGSVSNNARGCALWEAFALLDIALLNSGNQNTFSRAGVG
FT                 SVIDLTFVSSSIFRRSSWKIGEFYTASDHEAILFEIGGSIRQRDVHPVACK
FT                 TYKADTLNVPQFTAAITGIELATESAQSMANQLARKLDEACGKSMQERKAY
FT                 RGHHRSVFWWNDSIAEARRACFRARRCYQRARKRNDGNWPSLHIVFARTRK
FT                 ALKRAIHSSKRECFLELCDSADKDPWGKAYKIVVKRVYANKKTAPTNXEQL
FT                 RDIVQSLFPARSDALTCRRPMQTHFAVDVVSNEEIKAAAGRLNPSKAPGPD
FT                 GIPNRAVKLAMMLNPDIFAQVYSQCLREGCFPDIWKLQKLVLLPKPGKSLD
FT                 EPSGYRPICLIDTIGKVLESIICARLESAIRLGGGLSPNQYGFRKSKSTTD
FT                 AISRVVDIASEAIKGERWKGGAKKYCLLVTLDIKNAFNTADWGSILDALQN
FT                 FGVPAHIHAITWSYFGRRQLEYTSDAGSVLHSISGGVPQGSVLGPLLWNIM
FT                 YDGVLRLTLCDSCQLIGYADDVALVVVKKEIKQAEAAANMAIAKIVEWLGS
FT                 VGLKLAAQKTEAVLISSRKLVETAQITVEGTTVQSKRAIRYLGVWIDTRLT
FT                 FREHLANIQEKASVCVRSLSRILLNTRGPKQETRKLLTTVHSSIVLYAARI
FT                 WKSALLVESYSRGIRSTHRLCALRVCCAFRTVSDDAVLVLAGMLPLDIQAD
FT                 EDTVVAAAPSDEPSKKLARAQARGRSLITWQRRWDASQKGRWTHLLIPNIE
FT                 KWLGRKHGSVNFYLTQILSGHGCFRQYLHRFGHEESPMCTVCSDNSVEDAQ
FT                 HILFRCRRYESQRRHLELTAGAGLTVNNLVDSMVGSPQTWEAVNSFAAYVM
FT                 RDLRQSERMRAGAS"
XX
SQ   Sequence 3830 BP; 1114 A; 872 C; 985 G; 853 T; 6 other;
     tttgttagcw aataaagcca atttgtcata tagcgatatg ctaaaaatgg taacgtctag        60
     cgaagatgac aaagtgcgct cgattggcgc taatgtacgc aaggcaagag atgaacaagc       120
     cgatggctga aaacstccag aagcttacga aagatatcga agtagctctc ggtgctcaga       180
     ttgaggccaa agcmctctca gacttcatca agcttgatgt cagagacttg gatgagatgg       240
     tgtctaagga cgagctagcg gctgaatttt cgagccagtt tggcgtccaa attactactc       300
     tggcgataaa gagtctacga ccagcattcg ctggtacaca gcgggcgacc atcagcgttc       360
     aggcagccct agccaaagat atcctcaatg tgggcagaat caagattagg ctgaacgaaa       420
     gccgcattag aatagacaat acacctgtta gatgcttcag atgccacgaa tttgggcatg       480
     tttcagcaca atgcaaatgc caagaagaca gaagcgactg gtgcctacgg tgcggcgaaa       540
     agcggcataa agccagaggc tgtaaaaacg cagcgaagtg tttcctatgc actgcaaatg       600
     gcataaaaga agcgggtcat gttgccggga gccagcgttg tccttatggg ccccgttgtg       660
     gccagaacgc tcttacaaaa aatgttaatc atggttaagt tcatgcaaat taacttaaac       720
     cactgtgaag cagcacatga tatgctgaag caaacgacga gggaacaaaa cattgatgta       780
     gtcatcgtaa gcgagccata cagactccat ggcggcaaca acacgacctg tagtacgcaa       840
     agaaaagcgg cgattttgct aactagcgtg cgaccgctgc aaatgtctca aacccgggct       900
     tttgcacatt ttgtacgggc taagatagac cggttctggg tgtatagttg ttacatgcca       960
     cctagcatca atcaccaaga attttgcgca gcgctggatg agctggctac cgacgcaaga      1020
     agccacagcc cactcattat agctggtgat ttcaacgcgt ggtccttaga gtggggcagc      1080
     gtttcgaaca atgctagagg ctgtgcctta tgggaggctt ttgccctact agatattgcc      1140
     ctgctaaaca gtggcaatca aaatacattc agccgagcgg gtgtaggatc ggtcattgac      1200
     ctcacttttg tcagcagcag catttttcgg cgctcctctt ggaaaatcgg cgaattctac      1260
     acggctagcg accatgaggc gatccttttc gagatcggag gatcaatccg tcagcgagat      1320
     gtgcatccgg tggcatgtaa aacgtacaaa gcggataccc tgaatgttcc ccaattcact      1380
     gccgctataa ctggtataga gttggcaacg gagtcagccc agagtatggc aaaccaattg      1440
     gctcgtaagt tagacgaggc gtgtggcaaa agcatgcagg aacgtaaagc ttaccgaggc      1500
     caccatagat cggtattctg gtggaatgat agcattgcag aagcacggcg ggcttgcttt      1560
     agggcaagac ggtgttacca acgggcgcga aaaaggaatg atggcaattg gccctctctt      1620
     catatagttt ttgcaagaac tcgcaaggca ttaaaacggg ccatacattc cagcaaacgg      1680
     gaatgcttcc ttgagctgtg tgactcagcw gataaggacc cctggggcaa ggcctataag      1740
     attgtagtga agcgtgtgta tgcaaataaa aaaactgcac caacaaatcn ggagcagctg      1800
     cgggatatag tacaatctct gtttccagct agaagcgatg cactaacgtg cagaagaccg      1860
     atgcagacac attttgctgt cgatgtagtc tcaaatgagg agataaaggc cgcggctgga      1920
     cgcctcaacc ctagtaaagc tccagggcca gacggcatac caaatcgcgc cgtaaagctg      1980
     gcaatgatgc tgaacccaga tatatttgca caggtgtatt cccaatgcct ccgggagggc      2040
     tgctttccgg acatatggaa gctgcaaaag ttggtcctgc tgccaaaacc aggcaaaagc      2100
     ctagatgagc catcaggata caggccaatt tgcctaatag acaccatagg caaggtcctg      2160
     gaatctatta tatgtgcgag gctagagtca gccatcaggc taggcggcgg tttgtcaccc      2220
     aatcaatatg gctttagaaa aagtaagtcc acaactgatg ccatttcaag agtggtcgat      2280
     attgcctcag aagctattaa aggtgagaga tggaaaggag gtgcaaaaaa atattgcctg      2340
     ctggtcaccc tcgacataaa gaacgctttt aacactgccg attggggatc tattcttgac      2400
     gcactgcaaa actttggagt cccggcccac attcatgcca tcacctggag ctacttcgga      2460
     aggaggcagt tggagtatac atccgatgct ggaagcgtgc tgcattccat atctggcggg      2520
     gttccccaag gatccgttct gggccctttg ctatggaaca taatgtatga tggcgtcctg      2580
     aggttgacac tctgtgatag ctgtcaacta atwggctatg cagatgatgt tgcactagtc      2640
     gtcgttaaaa aagagattaa gcaagcagag gctgcagcaa acatggccat cgcaaagata      2700
     gtagaatggc tgggctccgt gggactcaaa ttagcggcgc aaaaaacaga ggccgttcta      2760
     atttcaagca ggaaacttgt tgagacagca caaattactg ttgaggggac tacggtccag      2820
     tccaaaagag ctatccgcta tcttggcgtg tggatagaca ctcgactaac ctttcgagaa      2880
     cacctagcca acattcagga gaaggcatct gtatgcgtgc gttcgttgtc aaggatcctc      2940
     ttaaacacga ggggcccaaa acaagagacg agaaagctgc tgacgacagt tcacagctcc      3000
     attgtacttt atgcggctcg gatctggaaa tcggctttat tagtagaaag ctacagcagg      3060
     ggcatacggt caacccacag actttgtgca ctcagagtct gctgcgcgtt tagaacggta      3120
     tctgacgacg cagtattagt gttagctggg atgctgccac ttgacattca ggcggatgaa      3180
     gacacagtcg tagctgcagc acctagtgat gagccctcga agaaactggc acgcgcacag      3240
     gctagaggca gaagcctaat aacatggcag agaagatggg atgcgtcaca gaagggcaga      3300
     tggacccacc tgctgatccc aaatatagag aagtggttag gcagaaagca tgggtcagta      3360
     aatttctacc taacccagat actaagcggt catggatgct ttaggcaata tctccatcgc      3420
     tttggacacg aagaatcgcc tatgtgcaca gtctgcagcg ataacagcgt agaagacgca      3480
     caacatattc ttttcaggtg tcggcgctat gagtcccaaa gaaggcacct agaactcact      3540
     gcaggggctg gattaacggt gaacaacctc gtggattcaa tggttggcag cccacaaaca      3600
     tgggaagcgg tcaacagctt tgcagcatat gtaatgcggg atctgcgaca atccgaacgc      3660
     atgagagctg gagcgtcgta gagagagcca ccgaccctag gaagcaattc ccacgaggac      3720
     gtcccctagg atcaagctcc ctttatggca tctttttctt tttcctctgt atatatctat      3780
     ctatactatc tatacctatc aataaaggaa taaaaaaaaa aaaaaaaaaa                 3830
//
ID   R1-5_DYa    repbase;    DNA;    INV; 4719 BP.
XX
AC   .
XX
DT   08-JUN-2011 (Rel. 17.09, Created)
DT   08-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Drosophila yakuba.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4719
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila yakuba.";
RL   Repbase Reports 12(9), 1937-1937 (2012).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1479..2129,2187..3854)
FT                 /product="R1-5_DYa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="CYTINIIQLNVNHCAAAQNLLAQTARERNADVLLLSE
FT                 PYLPGVGNSVVLDELGKAAIKCHTSLPVEECENIPMRGIAYAKIKGVHFYS
FT                 CYAPPSDSPEQFEDMLRKLVDHARGRRPTVIGGDLNAWATEWGSRTSNTRG
FT                 RAVIEAMNLIDLVLLNDGLKPTFNNDRGSSHIDVTFVSSVLAANANWMVQE
FT                 DITLSDHNLISFRVRTRSRCPDSGDVHIWRTMASEGDIAYEHAQSNMRRSD
FT                 ARKTNAKRKPPVTGGAPLYTSPEDNRTTPNARRHTKRSEPSSKTAYLQQRQ
FT                 MHLKDLLASVDDDPWGIAYKKVRKKLNVAGGGTPQDPVALASIVSELFPSQ
FT                 DTLWQPALEAPASDFPCITACEVVEAAKRIKPNKAPGIDGIPGLIVKAAAT
FT                 ARPEVFREAFQQCLLEGVFPKRWKTMKLVLLPKGKGPANAAGSYRPLCLLD
FT                 IVGKLFERILYTRIEAITESPTGLHCQQYGFRKGKSTIDALTAVTEVAKNA
FT                 LDGDRWLGGSKQYCAIITLDVKNAFNSARWPIILGAMRNMGIPGYLRSVVG
FT                 NYFRERTLWYVTEAGPRCHQVSAGVPQGSVLGPILWNIMYDGILKISKPRG
FT                 VELHCFADDVAVTTVAKTIPELQDNSNVAIRAITDWLEKVGLGIAAHKTEL
FT                 VLLSSRKRIESMQVEVKGEIITSAGTLKYLGVLIDRRLSFKDHAAYASRKA
FT                 AMTAAALARIMPNVGGPRLPARTLLAAVTKATLLYAAPIWSCVTSKVTYLA
FT                 SARAVSRTMALRLNQGLFTRLG"
XX
SQ   Sequence 4719 BP; 1302 A; 1198 C; 1310 G; 902 T; 7 other;
     tgccaatcta tcgcagttgg cgatctggtc cgagcggcgt tgccagacaa acggcgctac        60
     cagacctgca ctggagatcg gttagggcgc gcaatcaggt aaattcaaat tcaaattcga       120
     atctgttttt tagagcggag ctttctgaaa agggagtcgg cacaaaggtc gcggacagac       180
     cgaaaatcaa cctctcaccc ttgcggtgcc taagtagagc tctggtgtcc gagaagaggc       240
     ggaataacct ccagcagtca acgcctaggg gaaatctgtg gcctacgtgg gagctcactt       300
     ttcaaaaagc tgatccgcgt gttgctacct gaaaaactgg tgctgttgga cccaaatgga       360
     caatccaaca gggggcaccg cccccaacgg tgatgaccca ttcaggagga gctctcgaat       420
     gtcgaggtct ccaaccaaaa taggcatcac ggtgcaagaa gttgaaaccg tgcaggcgac       480
     ggcgttagga gggcaagttg gcggagctgt tgtggaggac actttggcct ctccaaaacc       540
     atgccaaaag aaaattgctg acctaatcag cgtaccgacg caaaaaatag cggtaaaatc       600
     cccgactggt tcgccaatcc gtcctgcaga cccgaaacga agacctgcgg agcttactgc       660
     gcttgatgaa cgtcaggata aacacgctgc tgactgcatt tgaaacgcat cgccacgggg       720
     cgcggcaaca aaagaccgca aagcggcgcc ggcgtattag cccaatgata ccatccgagc       780
     ccaccattac gaaggagcca aggccagcca gctacgcgac cgttgccaag gacgcgagta       840
     caagggaggt gtggactaag gagcgattgc gcaagaagcc agaggccatt atactcagag       900
     cgatcccggc gactttggaa aacaggttaa aaagatccga gacccaaaag ggcgagctac       960
     tgctcgaaag gggaaagcct ctgccagcgt cccggctttc ggggagaccc caaagaaatg      1020
     gctgcggtac gcacggggca cagtgatgga tgaggcaaca acagcggtgg aactccaaag      1080
     tagtctcgcc tcccaatcca aggcatacat gtaacgccag aggatgtagc gggtggcgca      1140
     aaatgaggga tggaacccag tcagcaacgg tgacgttatg cacgaacgat gcaataacgg      1200
     ttctcaatcg ggaccgtagg atggtcacgg tgtcgcatcg cccaggacgt tcgcccatta      1260
     agatgcttca ggtgcctaga atttggccat cggtcttaca cctgcaactc agccgatcgc      1320
     tcggactgct gccttcgatg cggcgagcat ggtcataagg caaagggctg cgcagcgcca      1380
     ccaagatgcc ttatctgcag caacgacgtg gataagaacc atgcgacagg tggtttcaaa      1440
     gccagcacca aaaaagaagc caatagccgc caaaatgatg ttacactatt aacatcatcc      1500
     agctcaacgt caaccattgc gcagctgcgc agaacctttt ggctcagaca gcgagggagc      1560
     gcaatgcgga cgtactgctc ctgagtgaac cataccttcc gggtgtgggt aactccgtgg      1620
     tgctcgatga actaggtaag gcggctatca agtgtcacac tagcctacct gtggaagagt      1680
     gcgaaaacat accaatgcgc ggcatcgcat acgccaagat aaaaggagtg cacttctaca      1740
     gctgctatgc tccacctagc gacagcccgg agcaattcga ggacatgctt agaaagcttg      1800
     ttgaccatgc aagagggcgc agaccaacag tcataggagg tgatctcaat gcctgggcca      1860
     ctgaatgggg cagccggact tccaacacaa gaggacgtgc agtgattgag gccatgaacc      1920
     tgatagacct cgttttgcta aacgacggcc tcaagccgac ctttaacaac gacagaggct      1980
     cgtctcacat cgatgtcacc ttcgtcagca gtgtcttagc ggccaacgca aactggatgg      2040
     tgcaagaaga cataaccctg agcgaccata acctgatctc gttccgggta cgtacaagga      2100
     gccgatgccc agacagcgga gatgtgcact agggccagta tgggacatca aaaagctgga      2160
     tgaggatatg ctggcctacc agttgaatat ggagaacaat ggcatcggaa ggtgacatcg      2220
     cttatgaaca tgctcaaagc aacatgcgac gcagtgatgc caggaaaaca aatgcgaaac      2280
     gcaagccccc tgttactggt ggagcgcctc tttacaccag tccggaggac aatcgcacca      2340
     cgcccaatgc acggaggcat acaaagcgaa gcgagccgag ctcaaaaaca gcatatctgc      2400
     agcaaaggca aatgcattta aaggacttgc ttgcaagcgt tgacgacgac ccctggggta      2460
     ttgcctacaa aaaagtcagg aaaaaactta acgtcgctgg tggaggaacc cctcaggacc      2520
     cagtcgcact ggccagcatc gtgtcggagc tattcccaag ccaagacacg ttatggcaac      2580
     ccgctctaga agcccccgcc tccgattttc cgtgtatcac agcatgcgaa gtcgtcgaag      2640
     cagcgaagag gatcaagccg aacaaagcac ccggcattga tggtattcct gggttaatcg      2700
     tcaaggccgc tgccaccgca agacccgagg tcttcaggga ggccttccaa caatgtcttc      2760
     tggaaggagt cttccccaag cggtggaaga caatgaaact tgtccttctg ccaaaaggca      2820
     aggggcctgc aaacgcagca ggcagctatc gccccctatg cctgctggac attgtgggca      2880
     aactgtttga gcgcattcta tacactcgca tagaagccat caccgagagc cccacaggcc      2940
     ttcattgcca acagtatggc ttccgtaaag ggaagagcac gatcgatgct ctcacagccg      3000
     taactgaagt ggcgaagaac gcacttgatg gcgaccgatg gttaggcggc agtaaacagt      3060
     actgtgccat catcacactc gacgtgaaga acgcgtttaa ttcagcgaga tggcccatta      3120
     tcctcggcgc aatgcgtaac atgggcatac ccggctatct acgaagcgta gttggcaact      3180
     acttcaggga acgcacgctg tggtatgtaa ctgaagctgg tccaagatgc caccaagtct      3240
     ctgcaggggt tccacaaggg tcggtactgg gaccgatctt atggaacatc atgtatgatg      3300
     ggatcctgaa gattagcaag ccgagaggcg tggagctaca ctgcttcgcc gacgacgttg      3360
     cggtaacaac ggtggcaaag acaataccgg agctccagga caacagtaat gtggcgatca      3420
     gggcgatcac cgattggctt gagaaagtcg gcctaggaat tgcggcacat aagacggaat      3480
     tagtcctgtt gagcagcaga aagagaatcg aaagcatgca ggtcgaagtg aagggagaaa      3540
     taatcacttc agcaggtacg ttgaagtact tgggagtcct aatagaccgt aggctctcct      3600
     ttaaggacca cgcagcgtat gccagcagaa aagcggcaat gacagctgca gcactggcaa      3660
     gaattatgcc caacgtggga ggacccagat tgccggcaag gactctgctt gcggcggtta      3720
     ctaaggcaac gctgctttac gctgccccta tctggagctg tgttacaagc aaagtaacct      3780
     acttggctag tgcgcgggca gtatctcgga caatggcact gagactcaat caggggcttt      3840
     tcacccgtct cggatgacgc agcgcgtgcc ctggagataa agcgccaata tctagtgcgt      3900
     gaaggtgttg accaaacgga gatccgcgag tggattcgtg gagtctggca gactaggtgg      3960
     caagggtcgc aacgtgggcg atggacgtac cagcttatcc ctgacctaac ggaatgggca      4020
     gagtgtgagc acaaagtggt ggactaccac atgacccagt tcctaacgga ccatggttgt      4080
     ttccgagggt acctgtttag gttccaccat gtggatacag cgcaatgcct cttttgcata      4140
     aacgcggtgg aaacagcaga gcacatcctc ctgcactgct ccaggtttgc tgtggagaag      4200
     gtccaactgg agtcgctcgc tggtgcacct ctcagcccaa gaggcctgat tgccgctatg      4260
     ttggcgaaca aggacttgga aaggggctca cgaaatcata gtccgcataa tgaagcgtgt      4320
     ccgcaggacg agatggccac agaaatggcg gatgaggagt actcccgtgt ggtggcgggg      4380
     taagaattct accacagttc gctcggcttg tcgtaagagg cgactaaaga gtcaaagaag      4440
     gagcgccatg caacagctca gcgcacaagt agagggagag cgattcagca tcacatcctg      4500
     ctcaccgatg aaatactttg actggcagtc ccggtgagca tgtcaaggac aggagatgga      4560
     gcggaggttt ttgtttagta cgtaggcata actctacttg gagggttatg aatcgtgcat      4620
     gccatctacg gtcggagacg gtatctttag aagatttcat tttcctgccg tatatttaat      4680
     aaaaaaataa ataaawaaaw amacamaaam atawamaaa                             4719
//
ID   R1-5_PPo    repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3136-3136 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 184 BP; 49 A; 48 C; 58 G; 29 T; 0 other;
     gccgggtcgt ggataaacta acgtagatgc cacggcccgg ttgggcgaag gagaacaccg        60
     cggggtttag tgggtagtcc ggccggatta aggccgggag tcccacacga aactgtccct       120
     gctgcctccg cagcatggac ggtgaagtgc gtaaatgcat tccccgcgac aacaaaaaaa       180
     aaaa                                                                    184
//
ID   R1-6_BM     repbase;    DNA;    INV; 1735 BP.
XX
AC   .
XX
DT   06-FEB-2014 (Rel. 20.10, Created)
DT   06-FEB-2014 (Rel. 20.10, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-1735
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3458-3458 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. Parital sequence. Similar to SART
CC   gag proteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1732
FT                 /product="R1-6_BM_1p"
FT                 /note="Gag."
FT                 /translation="FCCRYRPAGGISCTGGICGPREDQTPSQKERPHRLGE
FT                 SMCVPPNLFNIILASSGYFENIDGGPRGSSSVRKRSRDNAPVGDGSVDLSS
FT                 DEEGLLPPQEIADHEERSAGSRGVSASRPRRNAQGRFVCSNTPAASKADSD
FT                 MGVTTEDPGGESCASLGSSKAEINAARREQRKAVAADEVSEMARRARERRA
FT                 ALAAEGGEPSAVALSQLALDGVDLVLKVATKSGSLKGTFTRGLKEAAADIK
FT                 EAIGILLNRTASDEVAKLQEENSRLRNDMEDLRRRVTALSEQQQRRTSTDA
FT                 ASVVAPAPAPRPTSTHTDDEVERIVRLCMLQCGSMVNARMEAISRRLPAEI
FT                 LRPPLAADTRRRAEEPPRPKPREGKPAEGVKKPVEGAPSSDQPTTAGSKGE
FT                 TWVTVVGRKKARRVAKAASAATHAPGQTAKAVAQPARRAAKGGRKGPXIRA
FT                 PRSEAVTLTLQPGAAERGVTYQSVIAEAKAKIKLSDLGLQAVTHRQAATGA
FT                 RLFEVAGTTSGSAEKADALAAKMREVLSPEDVRVSRPMKTAEVRITGLDDS
FT                 VTSEEVVAAVARSGECPSDKVRAGDIRTDA"
XX
SQ   Sequence 1735 BP; 381 A; 489 C; 582 G; 282 T; 1 other;
     attttgttgt agataccgac cagcgggcgg tatatcctgc accggaggca tctgcgggcc        60
     tcgggaggat caaacaccct cccaaaaaga gcggccacat cgccttgggg aaagtatgtg       120
     cgtaccaccc aatttgttta atataatact ggcaagcagt ggttattttg aaaatattga       180
     cggaggaccg cgtgggtcgt cttccgttag aaaacgctca cgcgacaatg ctccagtggg       240
     agatgggtcg gtggatctgt cctcagatga ggaaggcttg ctgcccccgc aagaaattgc       300
     cgaccacgag gagaggtcgg caggctcgag aggagtgagt gcttcacggc cgcggaggaa       360
     cgcacagggt aggttcgtgt gctccaatac tccggctgcc agcaaagcag atagtgacat       420
     gggggtcact accgaggacc ctggtggcga gagctgtgcc tcgctaggga gctcaaaggc       480
     ggagatcaac gccgcccgaa gagagcagcg caaagccgtc gcggccgacg aagtgtcgga       540
     aatggcccga cgcgcacgcg agcgacgcgc tgctctagcg gcggaagggg gggaaccatc       600
     tgcggtggcc ctaagtcagc ttgccttgga cggggtggac ttagtcctga aggttgccac       660
     caaatccggc agcctgaagg gcacgtttac ccgcggtctg aaagaagctg ccgcggacat       720
     taaggaggcg attggcatcc tcctcaacag gacggcctct gacgaggttg cgaagttgca       780
     ggaggaaaac agccgtctcc gaaatgatat ggaggacctc cggcgacgag tcactgcgtt       840
     gagcgagcag cagcagcggc gtacgtccac tgatgccgca tcggtagtgg ccccggctcc       900
     cgcaccgaga ccgacaagca ctcataccga cgacgaggtc gagcgcattg tccggctctg       960
     tatgctccag tgcgggagca tggtcaatgc tcgtatggag gcaatttctc ggcgcctccc      1020
     tgcggaaatc ctccgtccgc cactagcggc cgatacacgg cggagggctg aggagccgcc      1080
     gagacctaag cctagggagg ggaagcccgc ggagggtgtt aaaaagcccg tcgagggagc      1140
     cccatcgagc gatcagccca cgactgctgg gtctaagggt gagacctggg ttacagtcgt      1200
     gggccgcaag aaggcacgca gggtcgccaa ggcggcctca gcagcaacgc atgcccccgg      1260
     ccaaaccgca aaggcggttg cgcagcctgc gcggcgggct gccaaaggcg gtcgcaaagg      1320
     accggmgata cgtgctccgc gttccgaagc tgtgacgctc acgctacagc ccggagctgc      1380
     ggagcgcggc gtaacgtacc agtcggtcat cgccgaagca aaggccaaga tcaaattatc      1440
     agatcttggt cttcaggccg tcacccacag gcaggctgcc acgggtgcac ggttgttcga      1500
     ggtggctggt actacgagtg gcagtgccga aaaggcggac gctctggccg ccaagatgag      1560
     ggaggtcctc agccccgagg acgtccgggt ctccaggcca atgaaaaccg cagaggtgcg      1620
     gattactggc ctggatgact ccgtgacctc tgaggaggtg gtagcggccg ttgcccgaag      1680
     tggagagtgt ccatcggaca aggtgcgggc cggcgatata cgcaccgacg ccacc           1735
//
ID   R1-6_BTa    repbase;    DNA;    INV; 9930 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-9930
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 731-731 (2018).
XX
DR   [1] (Consensus)
XX
CC   reconstructed sample sequence. 1 to 3 copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           808..4554
FT                 /product="R1-6_BTa_1p"
FT                 /translation="MRGSRGGNPQPPQPPHAHPPPPPPADETTYRSCDSGA
FT                 ANGNNATMYHSVNAGSDTASLNSANFITGIGGCPNFANSTMVAANNGSGSY
FT                 LTGTQSSGVLYGTARGQNMQAFLDDERAIAAAAAEGLTLATRGRVHEQMAP
FT                 FRARAHSDSRRQIRGELEGFLGAAGLLFGDSRRRPFTAVSKQGTHRSWNDD
FT                 RRYIPAPETSIVLVERRNVQQSVRXPEVCGSNEDDAARPATPDLTLYGLEP
FT                 DLKKIPMATRVDAEIEARKAGNIKPQGIFFVKLKVKGGCSYTEDIRTLRPW
FT                 LKLLRPKMYERAXADGNLEPHVEERGLMEMALDLTPAELILWFKLRAIMPT
FT                 KLDPTLSPAASVASLLDVTESEISKLTEEYKTRQQRGEPPSPAAPLLPPSY
FT                 WDAMEKGQDEGKXPGGNSRVNDRLYPDLKLELEDDSPTSVEMPPVAAPRAN
FT                 LKARRTPSGLRVIYPNAEDYSTLGKQATPEIVRTPATPPERKVETFHPTGA
FT                 DLRRSLVLEGAELYLAVDDVGDATRLWMPLSSVSKLMSQRYGLDGAPEETW
FT                 RLMRDAEDAQLRWVGRALDCKSSPIPWHEIHEGPKGEPLMRLHCGGADGED
FT                 PAGRKDETVTRTNPSLPAANLTGIGRPGARHPARVRLYAESSPATSSSPKR
FT                 RRNDSAGGIGAEADEMYATFTRDRDGLGNQLPKIQSSFTQLMSQLEGTLRE
FT                 DQHLAATGLREEIESGLRKWKRLGTVLNHLDEVFQMAAEEKVGLEARLEEK
FT                 DMQIAELREQIAALSRRKLTPEEIQLGLDAGVAEEEWPAWMLQPWPAEAFM
FT                 KTGVVVGDSPSEEIGNLILIKSPGDKEVINQLLQLDLPKTVKNVLKEDTVE
FT                 SGNFAKVVNREILTVGGQQKEMDTVFYVVNYEAAEDEFVNAKNLALALKRA
FT                 TLDAPDAQFTFCTRTRAMNSVVRKWVELHSRRTKNDNRVWYSGRRRKSTGE
FT                 NRTSDGLKNTADTQPQQQHKTSQGVPTAAPRRLPSRIQQPQQQSQQSRRRW
FT                 EQPSAQAAHQMIHTVAFTDGDFPALGAPGGGKARKPANKPKRPVVFIQTDG
FT                 RSAGEMNRFVRETVGDLAQLIVDAGMTRDGRMKIEVETAIGAERLQKAIER
FT                 KAPSKAVAREPILRLVVRRLDNSLTEDDLTEELKVAGLDVVNVRIPANAAG
FT                 IAFIGVKDNAKSREVLNSGSVRICFATCPVREYQESNVCYRCHEAGHIQYQ
FT                 CNSAVDYSKCCRKCKKEGHIARDCQVQNMEIENGKQQQQ"
FT   CDS           4554..8378
FT                 /product="R1-6_BTa_2p"
FT                 /translation="MMDRQTLLDKWVRKQPRFEMTPTDRHGNRESSARGGP
FT                 SSSTDTRETVERAPGKRTLTGKVTATTRTRVNRRYSHPDTWPVFNIFDSXN
FT                 ESDNTSDNDREELQSSTRGKQTSTSDNSQGIARQQITNTTSKMMDEEKDIF
FT                 FAMNGPTRITNDNNQGSAGVGKTREPQMNQVLLNQIINDNSDEFRCNTDGI
FT                 TKQTRSHQVDLITVEHRCRGDRSKNDKYPPATSEKRELECKHQRYISSCRC
FT                 CFQPVLMGLYTCKHFTLFSRCHSCKNAYVPNIALPGVVTEKSVATRKVLPP
FT                 TNTFTFIGANANRSRSSLDLILRAAKRERAVALVVSEPNIKRTLSPEWHTD
FT                 EKRGVAILILSPAIGRCLRSGRGDGFIWMEFSDLIVAGCYLSPNAGISAMA
FT                 ESLDRLTVDLGPLNKKVLFMGDFNGRSEEWGDRLANQRGKTLSDWIASNNY
FT                 VIQNVNSGPTFRNTRGGESVVDLAITNQQLAPSVLECTVLQDDYLSDHQPV
FT                 RISVRTKGRSYIPPQNILPRWRVRDGDLEELSNFFQTQTTPSVVDPAECTA
FT                 LITDGCKSSLKVARPGCFRRPEYWWSTEISDLLATVNAQKRKWLHAKDRAG
FT                 ASPAELDYLETQWRSSRGELKAMITRSKAERWKDVLEAVEEDPWGEGYKIV
FT                 TGKFQPIDPSTLPSKSEKLKIAEDLFPEGPSFEREIFDVAENDIPQFTEEE
FT                 LKTAISRVKGRKAPGPDGLPPEAVKLFVLKNIKICLAMFNVCLLLGIFPLL
FT                 WKISKLLLLPKPRKTPDSPLSFRPICLINVLGKILERLIVVRLIQECPDLA
FT                 DNQFGFRPGRSTVDAIKHITDFARSNWRLKGHGTVLTMLDIKNAFNSAQWH
FT                 LILEALRLRNVPPYLIRIIQSYFQDRYLIIEDEVRRLSCGVPQGSVLAPFL
FT                 WIVLYDSVVKGALPMSSILSAYADDVAIATSERSAWAIGDRASAAVRYTVQ
FT                 RIEALKLIVEATKTAVVLLFCKRSDLNVTVKVKDTVHTPTKHEKYLGVWLD
FT                 RGLNFSYHVKMTAAKTRRIAGFLVKIMPLQGGCSFRKRRVLASVTTSILTY
FT                 AAPVWVHAMDVKVSAAKVIGAMRPVKIRICSAYRTVANEALDVLTDVPPAD
FT                 LLVRRVADRYNLCDTVRAQENLLQQWRQRWLENQKNTAKWTRILIPDLDVW
FT                 CQRSFGYPNFFTTQLLTGHGAFGKYLFKLKLCDSPMCGHCGLIDSAEHVLF
FT                 HCQRWGRARRDLFEVIGGQCLPGELIGTLLQDRKYWRAFERFAEIVLSEKR
FT                 RNFTTRRFVVGPII"
XX
SQ   Sequence 9930 BP; 2593 A; 2369 C; 2774 G; 2188 T; 6 other;
     gccgtttgga tagtcactgg agacagtcac gctaagcgga gctccacgaa aagtgtgtaa        60
     agttggtgaa aaagctgctt gaagaaattg tttctaggac tcaatcgatt cccgaagcaa       120
     aatactggcc tttaataggt acggattgct attttcgttt tcgtgcgacg ttttatttca       180
     ttttatcacg gtgtgtgtct ttggccgtct cacaatattt cgcgttggac gaattggtga       240
     ggaactgctt ttttgtgtct aatttcgtgt agtaggttta tagtgttttc attttaagta       300
     ttttacatca ctttcttttc tcatattcgc ttatttttta atgaaaaaag tttgtgacat       360
     taattaacgg tgaagcacca tatggtgaca tctccacgta gccgcgttgg ctcttcagtg       420
     tgaccgtacc cgagtgacgc acacggtaga taaagtgcat agtgcgtgta tgcaaggcgg       480
     gaccgggtca acggtgcgag ctgttaagcg ggaaaatttg aaattttcaa atttcccgcc       540
     aaaactttaa aggcccctac agggtgcaat tctgtcagga gcccaccgga ggggactgat       600
     tcttcctgat cttacacagg ggcacacctg tgccaaattt cagatcaatc agacaaaaag       660
     tgataagaat aggtttttta atttttcgaa ctttttcggc gggaaattcg aatttccgaa       720
     attcaaattt cacccgcgaa tttggactta gaattctccg aagcgaaaag cgtggcagaa       780
     agtgagtgta gagtgcgggt ctaagccatg agaggaagca gggggggcaa ccctcaaccc       840
     ccccaacccc cgcatgccca cccaccccct cctccccctg cagacgagac aacatacaga       900
     agctgcgact ccggagcggc caacggtaat aatgcgacga tgtatcatag tgtgaacgcc       960
     gggagtgaca ccgcatcatt gaactcggcg aacttcatta cagggatagg tggttgtccg      1020
     aatttcgcca actcgactat ggtggcggct aacaacggta gcggtagcta cctcaccgga      1080
     acgcagagct ccggagtatt atatggaacg gccagagggc aaaatatgca ggccttccta      1140
     gatgatgaga gggctattgc agccgccgcg gctgaaggcc tcactctagc caccagaggg      1200
     agggtacacg agcagatggc acccttcagg gcaagggcsc atagcgactc acgccgtcag      1260
     atccgtgggg agttagaagg ttttctcggg gcagccggct tgctttttgg tgacagcagg      1320
     cgaagaccct tcactgccgt cagcaagcaa gggacccaca gaagctggaa cgacgacagg      1380
     aggtacatac ctgcccctga gacttccatc gtcctcgttg agagaaggaa cgtacaacaa      1440
     agtgtgagag kgccggaagt atgcggcagt aatgaggatg atgcggcaag acctgcgact      1500
     ccagacttga cgctgtacgg tttggagcca gatcttaaga agattccgat ggcgaccaga      1560
     gtggacgcgg aaatcgaggc aaggaaggct ggcaacatca agcctcaagg watcttcttt      1620
     gtaaagctca aggtaaaagg tggctgctcg tacacggagg atatacggac ccttcgcccg      1680
     tggctcaaac tgctgaggcc gaaaatgtac gagcgagcga akgcggacgg aaatctggag      1740
     ccgcacgtag aagagagggg cctgatggaa atggcgctgg acctgacacc agcggagctc      1800
     atcctctggt ttaagctccg agcgataatg ccaacgaagc tggatccaac tctttcgcct      1860
     gctgcatcgg tcgcaagcct gctggacgta accgagtctg agatatccaa gttaaccgag      1920
     gaatataaga cgcgtcagca acggggtgaa cccccatctc cggccgcacc cctgttaccg      1980
     ccgtcttatt gggacgcaat ggagaaagga caggacgaag ggaaaamacc aggtggaaac      2040
     agcagggtga atgatagact gtacccggat ttgaaattgg agctggagga tgattcaccc      2100
     acatcggtgg aaatgccccc agttgcagcc cctcgagcaa atctaaaggc aagaaggaca      2160
     ccctctggat tgagggttat ataccctaac gcagaagact actccacatt ggggaagcag      2220
     gccaccccgg aaatcgttag gacccccgcc actcccccgg agaggaaagt ggagaccttc      2280
     caccccactg gggcggatct caggaggtct ctggtgttgg aaggagcgga actctatctc      2340
     gcggtcgacg acgttgggga cgcgacacgg ctctggatgc ccctgtcttc ggtgtccaag      2400
     ctgatgagtc agcgttacgg cctcgacggc gcaccagagg agacatggag actgatgcga      2460
     gacgcggagg acgcgcagct gcgctgggta ggccgcgcac ttgactgcaa gtcttccccc      2520
     atcccgtggc acgagatcca tgaaggacca aagggagagc ccctcatgag attgcactgc      2580
     ggtggggccg atggtgagga tccggcagga aggaaagacg agaccgtcac gaggaccaac      2640
     ccgagcctac cggcagccaa cttgacggga attggccgcc cgggcgcacg ccatccggcc      2700
     agggtgcgcc tctatgcgga gtcgagcccc gccacttctt cctcaccgaa acgcagaagg      2760
     aacgattcgg caggaggcat cggagcggaa gcggatgaaa tgtatgctac gttcaccagg      2820
     gaccgcgacg gactgggaaa ccagctccct aaaatacaga gcagtttcac gcagttaatg      2880
     agccaactgg agggaaccct cagggaggat caacatcttg cagctacagg gttaagagag      2940
     gaaatcgaat cggggttaag gaaatggaag aggttaggaa ctgtcctgaa ccacttggac      3000
     gaggtattcc aaatggcggc ggaggagaag gttggcctgg aagccaggct cgaggagaag      3060
     gacatgcaga tcgccgaact gagggagcaa atagcggcac tctcaagaag aaagttaaca      3120
     ccggaagaaa ttcagctagg gcttgatgct ggagtagcag aagaggagtg gcccgcgtgg      3180
     atgttacagc catggcccgc cgaagccttc atgaagacgg gagtggtggt aggagattca      3240
     ccgtcggaag aaatcgggaa ccttatactg attaagtccc ccggtgataa agaagtaatc      3300
     aaccagcttt tgcaacttga tttaccaaag acggtgaaga acgttctgaa agaagacacg      3360
     gtggagtcgg gcaacttcgc gaaagtggtc aatcgtgaaa tccttaccgt cgggggtcag      3420
     caaaaggaga tggacactgt gttctacgtt gtaaattacg aagcggcgga agatgagttt      3480
     gtgaacgcga agaatctggc tctagcacta aaacgagcga ccctagatgc acccgacgct      3540
     cagtttacgt tctgcactag gacgagagca atgaattctg ttgtgagaaa gtgggtggag      3600
     ctacatagca ggagaactaa gaacgataat cgggtttggt actctggccg tagaagaaag      3660
     tcgacggggg aaaaccgaac ttcggatgga cttaagaaca cagctgacac gcaaccgcag      3720
     cagcagcaca aaacttcaca gggagttcct acagccgctc caaggagatt accctcgagg      3780
     atacaacagc cacagcaaca atcgcagcaa tctcgcagaa gatgggagca accttccgcg      3840
     caggcagcac atcagatgat acatactgtg gccttcactg acggtgactt tccggcattg      3900
     ggagccccag gtggaggcaa agcaagaaaa ccggcgaata aaccgaaacg acccgtcgtc      3960
     tttatccaaa cggatggcag atcggccggg gagatgaacc gtttcgtccg ggagacggta      4020
     ggcgaccttg cacaactcat cgtggacgca gggatgacga gggacggaag aatgaagatt      4080
     gaggtagaaa ccgccatcgg agctgagcga cttcagaagg cgatagaaag gaaagcccct      4140
     tcaaaagcgg tagccaggga gcccatttta aggctggtgg tgcggcggct ggataacagc      4200
     ctcacggagg atgacctcac ggaggagttg aaggttgccg ggctcgatgt ggtcaacgtc      4260
     cggataccag cgaacgcagc cgggattgcg tttatcgggg tgaaggacaa cgccaaaagc      4320
     agagaggtcc tcaatagtgg atccgtcaga atctgcttcg cgacatgtcc cgtgagggag      4380
     taccaagagt caaacgtctg ctacaggtgc cacgaagcgg ggcatatcca gtatcagtgt      4440
     aatagcgcgg tcgactacag caagtgctgc agaaaatgca agaaagaagg gcacatcgcg      4500
     cgtgactgcc aggtgcagaa catggagatc gaaaacggga aacagcaaca acaatgatgg      4560
     acagacaaac gctactcgac aagtgggtcc gaaagcaacc tcgttttgaa atgacaccca      4620
     cggaccgaca tggaaatcgg gagagctcgg ccaggggggg gccatcgtct tcaacggata      4680
     cgagggagac ggtggagcga gcccctggga aacgaacatt aacaggcaag gtgactgcaa      4740
     caacgagaac gagagtcaat cgccgttatt cacacccgga cacatggcct gttttcaata      4800
     tttttgactc ccamaatgaa agcgataaca catcagataa cgacagagaa gagctccagt      4860
     cctcaacacg aggcaaacag acctctacat ctgacaattc gcaaggaatc gcgagacaac      4920
     aaattacaaa taccaccagt aaaatgatgg atgaagagaa ggatatattc tttgcgatga      4980
     acggtccaac taggatcacc aatgacaaca atcaaggtag tgccggtgtt ggaaaaacga      5040
     gggaacctca aatgaatcaa gtcctgctta atcagattat caatgataac agcgatgaat      5100
     ttagatgcaa cacggatggc atcacaaaac aaacaaggag ccaccaagtc gacttgatta      5160
     cggttgaaca ccgttgccgt ggtgaccgat cgaagaatga taaatacccg cctgctacgt      5220
     ccgaaaaaag agaactcgag tgcaaacacc aacgatacat ttcgtcctgt cgctgctgct      5280
     tccagccggt cttaatgggc ctatacacat gtaaacactt tactcttttt tcgcgctgtc      5340
     attcatgtaa aaacgcatac gtgccgaaca tcgctctacc gggtgtagtg actgagaaat      5400
     cagtcgctac aaggaaagtg ctccctccta cgaacacctt tacatttatt ggcgcgaatg      5460
     caaatcgctc gcgaagctct ttggatctta tcctacgcgc agcgaaacga gagcgggccg      5520
     ttgctttagt tgtatccgaa cctaacatca aacgtaccct gagcccggag tggcacacag      5580
     atgaaaagag aggagtggcc attctgatat tgtctccagc catcggacga tgtttgcgct      5640
     ctggccgagg ggatggcttt atctggatgg aattttctga ccttatagta gccggttgct      5700
     acctgtctcc caacgcgggg atttcggcga tggcggagtc tctggaccgc cttacagtgg      5760
     acttgggccc tctaaacaaa aaagtcttat tcatgggaga ttttaacgga agatcggagg      5820
     aatgggggga ccgccttgcc aatcaacgtg gtaaaacgct ttccgattgg attgcctcga      5880
     acaactatgt gatacaaaat gtgaattcgg gacccacttt tcgtaatacg aggggcggcg      5940
     aatcagtcgt ggatctagcg attacaaacc aacaactagc accgtcagtg ttagaatgta      6000
     cagtgctaca ggatgattat ttgagtgatc atcaaccggt tcgaatatct gtgcgtacta      6060
     agggtcggtc ttacatcccg ccacaaaaca tattaccacg ctggcgcgtc agagacgggg      6120
     atcttgaaga actgtcaaat tttttccaga cgcagaccac ccctagcgtc gtggacccgg      6180
     cggagtgcac tgcgttgatc acggacggat gtaaatcctc gctgaaagtt gcacgccctg      6240
     gctgttttcg ccggcctgaa tactggtggt caactgaaat ttcagactta cttgccacag      6300
     taaatgcgca gaaacgaaaa tggctgcatg caaaggacag agccggggct tcgccggcgg      6360
     agttggacta tctcgagact cagtggcgct cctcgcgagg ggaactgaag gcgatgatta      6420
     ctaggtctaa ggcggaaaga tggaaagatg tgttggaggc agtcgaagag gacccctggg      6480
     gagaaggcta caaaattgtc actgggaagt ttcagcctat cgatccgtcc actctcccat      6540
     ccaagtcgga gaaactgaag atcgcagagg atttgttccc cgagggaccg tccttcgaaa      6600
     gggagatttt tgacgtggcg gaaaatgaca tcccgcagtt tactgaagag gagctaaaaa      6660
     cagcgataag tcgagtcaaa ggtcgaaagg ccccggggcc ggatgggctg cctcccgagg      6720
     cagtgaaact tttcgtcctt aaaaatataa aaatttgctt agccatgttc aacgtttgtc      6780
     tgttgttggg catttttcct ctcttatgga agatttctaa attgctacta ttgcccaaac      6840
     caagaaaaac accagattcg ccgctgtctt tcagacctat ttgtctcata aacgttctcg      6900
     gaaagatctt ggaaagacta attgtggtca gactaataca agaatgcccc gacctggcag      6960
     ataaccaatt tggcttccgc cctggccgct cgactgtgga tgcaataaaa catatcaccg      7020
     attttgcgcg ttccaactgg cgtctaaagg ggcacggcac cgttctgaca atgctagaca      7080
     ttaaaaatgc tttcaacagc gcacaatggc atttaattct tgaggctctc cggctacgaa      7140
     acgttccccc gtacttaata cgaataatcc aaagttactt tcaggatagg tacctgataa      7200
     tagaagacga agtccgacgg ctctcgtgtg gagtcccgca ggggagtgtc ttagcgccat      7260
     ttttatggat cgtattgtat gactccgtcg ttaagggagc tttaccaatg agcagtattc      7320
     tgtcggccta tgctgatgac gtagccattg ctacatcgga gcgtagcgcc tgggccattg      7380
     gagatcgggc gtctgctgca gtgcgatata cggtgcaacg gatcgaggct ttaaaattaa      7440
     ttgttgaagc tactaagacg gcggtagtcc ttttattctg taaacgatct gacttgaacg      7500
     taaccgtgaa ggtgaaggat actgtgcata caccaacgaa acacgagaag tacttggggg      7560
     tctggctcga tcgaggattg aacttttctt accacgtcaa aatgacagca gctaaaacaa      7620
     gacggatagc cggtttttta gtgaagatca tgcctctgca aggtggatgc tcatttagaa      7680
     agcgacgcgt gcttgcctca gtcacaacca gtattctaac ctatgcggct cctgtttggg      7740
     tccatgcgat ggatgtcaaa gttagtgcgg caaaggtcat tggcgccatg cgaccggtca      7800
     agatccgaat ctgctcggcc taccgcacgg ttgcaaacga ggcgctggat gtcttaacgg      7860
     atgtcccgcc ggcagatctt ttagtacgac gagtggcaga caggtacaac ctttgtgata      7920
     cagtgcgcgc acaggaaaat ttgttgcaac agtggcgcca gagatggctt gaaaatcaaa      7980
     aaaatacagc aaagtggact agaattttga tccctgattt ggacgtgtgg tgccagcgtt      8040
     catttggtta ccccaatttt ttcactacac agctcttaac cggccacggg gcttttggga      8100
     aatatttgtt caaactgaag ttgtgcgatt cacccatgtg cgggcattgc gggctgatag      8160
     attcagcgga acatgtgctt tttcattgcc agcggtgggg tcgcgctcgg cgagatttgt      8220
     tcgaagtgat tggtggacag tgcctgcctg gggagctaat tgggactctc ttgcaggatc      8280
     ggaaatattg gcgagctttt gagagatttg cggagattgt tctatcagaa aaaaggcgaa      8340
     acttcacaac taggcggttt gtggttggtc cgatcattta attcaattat tgtattattt      8400
     acactgtaca tgttctgagc acccacaatg tttgtcagtg gctggacgaa ttgtgggagg      8460
     cgacaagatt ttccccacaa ggcttttgct tgcttccatg gttggtcctc cttacttcat      8520
     aataattaat taatatctat acaagtattt acaagtattt acaattgtta cttaatttct      8580
     cggggtcgcg tctttcgttc ctccggagag tctgattggc acctatgcat atttttatac      8640
     ttttatcgag tcttttatag ttttcattgt gacaagttta tgcagaatca gtgtgcaagg      8700
     gatgtgttag tggtgactag cgacaagtaa aatgatggtg agtggtgatg tgaatagtta      8760
     taaatagtgc ctaatttagt gtttgtttat tttaagttgc ctctcggggg aggggttgag      8820
     actctctctt cccttccccc tgttaacgca ggggatctgt ctgtggatct ggggtttgac      8880
     gctcccccgt acccgagtta gccggcaaat tgctagagat agtcggctac ccttcgaccc      8940
     cgtagactgc cacctcggtg actttctcgg gtttcctcct cccgcctttt ggcgggatag      9000
     gcatcccctg atgttgccgc tccactgtgc ctgcgtcctc ggtcgttagc ccacatcctg      9060
     tcgcggcggc aacgcggcgg cagatcaagc gggatcggtg acgtgtctgg tttcgtgatt      9120
     cccgcgcccc ccaggatccc ggaatgcgga ccttgagtcc gcgcatccgg ccctggtggt      9180
     tggcgggggc tgaaagcggg ccggaccgga ggagcaagtc aaagttgact agtgcttcgg      9240
     atggggttgg ccggccgcgt cgctcgctac tcgtagggag gggcgctgcg aagtctgagt      9300
     cccatgggtg cagtgggtag gactcggagc gccggcgtaa cacaggactc cttggagtcc      9360
     tggccgggtg ccacctggaa tcccccacac atccacggga ggtaaccttt ccgcttcaga      9420
     ggctccagtg ctgacggacc cctcggggta cggattccca tcctcagagc tgctgggagg      9480
     tttaaatccc tcctggcggg ggttaggtac tccggaggca acggggtgct cctatgaggg      9540
     tggggtccgg ctggacactg ttgcgggggg ccctctcgcc tgacgaggta atggccgtag      9600
     gctgaccgtt gggtgggaat taaactcgga caaaagggga tgcgtagtgc ggatgcatct      9660
     caaggggagt gtcgttagtg tttggcgggc ctactgtcat aggccaaacc cacataacca      9720
     ttcacactcc cggaccgagg tccccggaca gcgatgcccg gggacgttcc actcggaccg      9780
     ggccgcgatt ggtatctggt acctgggagt gggcctggaa aacccccccg gggctcgccg      9840
     gatctggggg cacttcggtt ccccctcaat ccagtgcggg agaaagcaga ttttcacttc      9900
     cgtttaaaca aaaaaaaaaa aaaaaaaaaa                                       9930
//
ID   R1-6_DK     repbase;    DNA;    INV; 5665 BP.
XX
AC   .
XX
DT   06-JUL-2012 (Rel. 17.07, Created)
DT   06-JUL-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_DK.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5665
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1170-1170 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1418..2563
FT                 /product="R1-6_DK_1p"
FT                 /translation="MGTILEDLLMKVNEQKVRSINQGMKNAFARLKELQEA
FT                 LMRHPEVRXPLSRIEDTVDRGCQTAQVCTPRSDKAAQTSPSRRVRPVKXGP
FT                 GSDPKRPKARSAQPSNPRRMAEGNDGGDGKSPTEQPRRVRTGAGRRERPRR
FT                 RGKDALIISPPPEMSYSEVLGLVTRANDARMEEVSDSVSRVRKTAKGELLL
FT                 EIKRNSXAQTSGIRDLIGKALGAGATIRTMTPQVSFRIWDLDELTTKEELE
FT                 DALVKQANLPPNSVTVKGLRALATGSQXATFTVPAGFAGALNNLGKVKVGW
FT                 TRCRIKELEPQLKCFRCLDTGHTASRCRSPVDRSKACFKCGKEGHKVAECQ
FT                 NPANCFKCEQLKRKDTRHQAGSRSCPLVASSREGHKHRA"
FT   CDS           2563..5559
FT                 /product="R1-6_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKVIQINLNHCAAAQDLLSQTVRESGAELAVLSEPYR
FT                 GGRNHNWAVDXSGKAALWVCGNTSLRLENVLADKGFVRAKAGGWWVYSIYL
FT                 APSLTLAEFAVILDRLAADARGRSPTLLAGDFNAWAVDWGSPTTNVRGRTL
FT                 LEVLSTLDVALLNVGQEHTFSRAGAGSVVDLTFASRSRAGQCTWMLSGVYT
FT                 ASDHAAIFTTLDAGNTRPPPPPAQQRKCFRVDSLDTQAFASRMQRVEATGD
FT                 SEAMANSVMXQVLTACEECIPSRTAHSRHRDSVYWWNHEIAEARKDCVRAR
FT                 RQYQRSYGSQSHLVKRETYHRCRRALKAAIKGSKKKCFLDLCEAADRDPWG
FT                 NAYKLIVKKVGRANNRAPLDAESLERIVAHLFPRMTNPELAAGAGTYPLHE
FT                 LEPVSEEEMLAVAARIKVAKAPGPDCVPNRALKLAICLRPDIFAALFDKCM
FT                 REGLFPSRWKAQRLVLLPKPGKPLDDPASFRPICLIDGAGKVLEYLISSRL
FT                 ERAIVAAGGLSDSQYGFRKAMSTVDAITKVVDIASAAIAGQRWKGGSKEYC
FT                 LIVTLDIRNAFNTARWGRIMDALSNFGVPTYLLNLMRSYFHDRVLQIDSDS
FT                 GTQAVELSCGVPQGSVLAPLLWNAMYDGVLRLPLPGRTEIVGFADDIAVVT
FT                 VAKEIARAEETSSQSIAIINEWLSNAGLQLAPQKTEAVLVSSRKKVEVASV
FT                 RVCDATVRSSRAIKYLGVMIDTRLSFREHLTYASSKAATTVRALSRIMLNH
FT                 HGPRQASKLLLASAARATMLYAAPVWSHAMASPSYSRGLIASHRLAALRIC
FT                 SAFRTVSDQAALVIAGTPPIDLLAKEQAEIHKKVHGRVLSSGEKKEARAAA
FT                 KSASLTAWQARWDASSKGRWTHRLIPCLEAWTKRAHGQVNFFLXQVLSGHG
FT                 CFRSYLHRFGHEESGGCSRCGHDVEETAEHVLFSCVKFENERRTVETLLRT
FT                 SITVENLVPEMLRNEENWQGVSSFAATIMGKLRIEERRRNQEQT"
XX
SQ   Sequence 5665 BP; 1322 A; 1593 C; 1731 G; 1009 T; 10 other;
     ggggccggtg tgtgtaagtc gcggtgaacg gacgccccat cgggggctcc gcaatagact        60
     cgcgctgtgg cagtgcccct aggggaataa aagtggtagc agtacgtagg acgcagtgtg       120
     agtgtagcct ccagacttac ctgtcgagga acggctcctg cggcccgcgg agggcacttc       180
     tgtgccccaa tgtttcggcg agatggacga tggatagggg taagagggga tctttcttcc       240
     ctggaacttt ctcttccttc tcttccgccg ctgcactctc tctttgggtc aaatgtggat       300
     gcccccacaa ttttgtgccg gtcacgtcag ctgattgctc gatcagctgg tgaacagtgt       360
     agagtaacga gcgcactgca gctgagtggc agcgctgcag atgcactcta catgcgcaca       420
     ttagcgccac ctacggggta acctgacagg tgtcagaagc taatgctaca agcttcagca       480
     aacgatcgct gcggaaatcc gtagcataca ttccagggct gctgctcgaa gtccttggca       540
     aggagacgga attgggccat gttccatcga attcgaggtt cacacgagcg gccaattggt       600
     ggaaaaggtc atggatcaga ccgactgcca tccccaccgc cctggcggca cacccaaaaa       660
     tggggctctg gcgaccgagg cggggcggta taacccccaa caaacgaagt cggagggaaa       720
     tattcgacca gcgagggagg ctccgtgtcg tcccgatatg gtggaagttt tcgccacacc       780
     caatggctta atccacgcag cgtctgctca tactgggcgg ctgcgtgatc tgcgtctgcg       840
     ccatagtggc cggcagtgga actagcctgg cagcaggtat cagctgcaca gaaatctaaa       900
     cccaggtagc gtctgaccca cattgggcgg ctacttggtc tgcgtctgag ccataatggc       960
     cggcagtttt aacctacctg gcagaaggta taaaatgcag cctcgcattg ggctaaaatg      1020
     cacaaataga aatgtcgagt attaacagta ttactccagg tggcagccac aaatgtggaa      1080
     atccacccgc ggttgatccc gcggcaaggg cacggattct ggaggcccta acccacattt      1140
     ctcccacwac ggcgacgccg gcggcccact tggccgacgt caacccgaaa gctacaagtg      1200
     tagacgatga actaagagcg ttccagaagg gctcccgcac acagcgcagc ccgccaggaa      1260
     ttgcggcgat taccaccgct gccccggcac taggcgggac cgctgaaggg gatawctcat      1320
     gcaccccatt agcgaaacgc aacagggact ccccgagtcc gacagggccc gagcatccta      1380
     ccaagaggcc agagccccct aaccacaact agtggagatg gggacgatcc tcgaagacct      1440
     gcttatgaag gtcaacgagc agaaggtgcg gagcatcaac caaggcatga agaatgcctt      1500
     cgctaggctc aaagagctcc aagaagcctt gatgcgccac ccggaagtaa ggmccccact      1560
     cagccggatt gaggatacag tggatcgcgg gtgtcagaca gcccaagtct gtactccgcg      1620
     ctccgataaa gctgcacaga cctctccgag cagacgcgtt cgaccggtca agsaaggccc      1680
     gggaagcgat ccaaaacgcc ccaaggcgcg tagcgcacaa ccttctaacc ccaggaggat      1740
     ggccgagggc aatgatggag gggacgggaa gtcgcccacc gaacaaccgc gccgtgttcg      1800
     tacaggagcg ggccggcgtg agaggcctag aagacgtggc aaggatgcgc tgatcattag      1860
     ccctcctcca gagatgtcct acagcgaggt gctcggcctg gttacgcgag ctaatgacgc      1920
     caggatggaa gaagtcagcg acagcgtctc cagggtcaga aagacagcca aaggcgagct      1980
     gttgctggag atcaagcgca actcgsaggc tcaaaccagt ggcatcaggg atctgattgg      2040
     caaagccctt ggagctggag ccacgatccg cacgatgacg ccccaggtct ccttccggat      2100
     atgggaccta gacgagttaa caacaaagga ggagctagag gatgcgctgg tcaagcaggc      2160
     aaacctcccc ccgaactcgg tgaccgttaa aggtttacgc gccttggcca caggaagcca      2220
     gwccgcaacc ttcacggttc cggcgggttt tgcaggcgcc ctcaataacc ttggcaaggt      2280
     gaaggtcgga tggaccaggt gccggattaa ggagctggag ccccaactta agtgcttcag      2340
     gtgtctggac acgggccaca cggccagcag gtgtcggagc cccgtagata ggagcaaggc      2400
     ctgctttaag tgtgggaaag aagggcacaa ggtagcagag tgccagaacc cagcgaactg      2460
     cttcaagtgc gagcagctca aaaggaagga cacgaggcac caggccggaa gccgctcctg      2520
     cccactggtg gcgtcctcca gagaaggcca taagcacagg gcatgaaagt gattcagatt      2580
     aatctgaatc actgtgcggc ggcgcaagat ctgctgtcgc aaacggtccg cgaaagcgga      2640
     gccgagcttg ctgtgctaag cgagccgtac agaggcggac gcaatcacaa ttgggccgtg      2700
     gatagwtccg gcaaggcagc tctgtgggtt tgcggaaaca cgtccctgcg actggagaat      2760
     gtcctcgcgg acaaaggctt cgtgcgtgcc aaagctggag gctggtgggt ctacagcata      2820
     tacctcgccc ctagcctcac gctagcagag ttcgctgtca tccttgacag gctcgctgct      2880
     gatgctagag gccgttctcc gactctgcta gcgggcgatt tcaacgcctg ggcggtcgac      2940
     tggggtagcc ctaccacaaa cgtacgtggc agaaccctct tagaagtgct ctcaacgctg      3000
     gatgtggccc tactcaatgt agggcaggaa cacactttca gccgggcggg agctggttct      3060
     gtagtagacc tcaccttcgc cagtcggtcg agagctgggc agtgcacgtg gatgctcagt      3120
     ggggtgtaca cggcaagcga ccatgcggcg atcttcacca cgctggacgc tgggaacacg      3180
     cggccaccac ctccccccgc gcagcagcgc aagtgcttca gggtggactc gctcgacacc      3240
     caagccttcg cgtctaggat gcagagagtg gaagcgacgg gcgactctga agcaatggct      3300
     aactcggtga tgwcacaggt gctcacggcc tgcgaggagt gcattccttc caggaccgcc      3360
     cactctaggc atcgcgactc tgtgtactgg tggaatcacg agatagcaga ggcacggaag      3420
     gactgcgtaa gagccaggcg gcaataccaa cggtcgtacg gttcccagtc acacctggta      3480
     aagcgtgaga cataccatcg gtgcagaagg gctctcaagg cggcaataaa gggcagcaag      3540
     aaaaaatgct tccttgatct gtgcgaggca gctgaccgag acccgtgggg aaacgcttac      3600
     aaattaattg tgaagaaggt cggcagagcc aacaaccgcg ccccactgga cgccgaaagc      3660
     ctcgagagga tagtcgcgca cttgttcccc aggatgacta accctgagct tgccgcaggg      3720
     gctggcacct acccgttgca tgagctcgag cccgtctccg aagaagagat gctggcagtg      3780
     gcggcaagga tcaaggtggc gaaggcgcca ggcccggact gcgttcccaa cagggcgctt      3840
     aagctagcga tttgtctccg tccggacata ttcgcggcgc tgttcgacaa atgcatgcga      3900
     gaagggctct ttccctcaag gtggaaagcg cagagactgg tcctgctgcc taagccggga      3960
     aagccgctgg acgacccagc atccttcaga cccatatgtc tgatagacgg ggccggcaag      4020
     gtgttggaat acctgatcag ctcgagactg gagagggcca tcgtagcggc aggaggcctc      4080
     tctgactccc agtacgggtt cagaaaggcc atgtcgaccg tcgacgccat caccaaggtg      4140
     gtggacattg cctccgcggc tatcgccgga cagcgctgga aagggggctc taaggaatat      4200
     tgccttattg tcaccctgga catacgcaat gccttcaaca cggcgagatg gggccggata      4260
     atggatgcct tgtccaactt cggagttccc acctatctgc tcaacctgat gcgaagttac      4320
     tttcacgaca gggtgctgca gatagactcg gacagcggta ctcaagcggt cgagctgtcg      4380
     tgcggggttc cgcaagggtc cgtgcttgcg ccacttttgt ggaatgcaat gtacgacggc      4440
     gtcctccggc ttccactacc agggagaacg gagattgtgg gcttcgcaga cgacatagcg      4500
     gtggtcactg tcgcaaagga gatcgcgaga gcagaggaga ctagcagcca gagtatcgcc      4560
     atcatcaacg agtggctgtc gaacgccgga ttgcagctag cgccgcagaa aaccgaagcc      4620
     gtcctggtga gcagcaggaa aaaggtggag gtggcaagcg ttcgggtctg cgatgcaacg      4680
     gtcagatctt ctagagctat caaataccta ggagtgatga tcgacaccag actctccttc      4740
     agggagcatc tgacgtacgc aagctccaag gctgccacga cagtgagagc gctgtccagg      4800
     atcatgctga accaccatgg cccaaggcaa gcgagcaagc tccttctagc gagcgcagct      4860
     agagcgacca tgctgtacgc agcccctgtg tggagtcacg ccatggcgtc gccttcgtac      4920
     agtcgtggtc tgattgcctc acaccgtctg gccgctctac gcatctgcag tgcgtttcgg      4980
     acggtctcgg accaggcggc gctggttata gctggcaccc cgccgataga tctgctggcc      5040
     aaggagcaag cagaaataca caagaaggtc cacggccgag tcctatcgtc cggggagaag      5100
     aaggaggcac gagcagcggc aaagagtgca tctctaaccg cttggcaagc acgatgggat      5160
     gcctcatcaa aagggcgttg gacgcaccgc ctaataccgt gtctggaggc gtggaccaag      5220
     agggcgcacg ggcaggtgaa cttcttcctg wcccaggtcc tcagtggcca cggttgcttc      5280
     agaagctacc tgcataggtt cggccacgag gagagtggag gctgcagtcg ttgcggccat      5340
     gatgtcgagg agacagccga gcacgtgctg ttctcgtgcg taaagttcga gaacgagcgt      5400
     cgcacggtgg agaccctcct acggaccagc atcacggtgg aaaaccttgt tcctgagatg      5460
     ctgaggaacg aggaaaactg gcagggagtc tccagctttg ccgccacgat catgggcaag      5520
     ctcaggatcg aggagaggcg caggaaccag gagcagacgt agtggggagc ggcgcccgcg      5580
     cgaagcattg cttcgcggcc gtaccgcgcg agtgttacgc cccatctact gtaacccccc      5640
     cccccctttt ccmttatgta catgt                                            5665
//
ID   R1-6_DMo    repbase;    DNA;    INV; 5359 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   nLTR retrotransposon from Drosophila mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-5359
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 5359 BP; 1754 A; 1180 C; 1312 G; 1113 T; 0 other;
     ttattattat tattattatt attattatta ttattattat tattattatt attattatta        60
     ttattattat tattattatt attattatta ttatttttat ttttattatt attattatta       120
     ttattattat tattattatt attattatat tattggtggg atggggttac gaaaacaagg       180
     caacgctacg ttgctcgtct agagactttc aatagcaatc cttgtcactg gtaattcaag       240
     ttgacacaca gcctccacga tcggccccac tggatagcga ttgggcagcc gaccaatcgt       300
     gaactaatgt gtgcagcgac tttagaagaa atagaaagat agaacttact aaagtgaaat       360
     ctttgaccga cccctgactt cgaaaaatac acgatttctg aaatgtttgc ccctgggctg       420
     acagctgtcg cattctagga cctcagtaag caggagtgac atcctgcgga aatggctcct       480
     aggtcaatgc tgcagctgcc tccgtcccgt taaaaccctg gcaggcctcc aagtacgttc       540
     gaagatcgtc accaactgat tcttcattgg tggtacaggt ttaagttgat atatatcctt       600
     aatttgtgca agatcctggc tctgaacatt ggctcccata aggaccaaag tcaaccctcg       660
     catggcctcc ctgctatgca cagataacca tgaggattgt ttgagtaact gtacacccga       720
     tctaagatag cggcttggag tcgggacccc ttaaaatgga atttagaaag accccaataa       780
     ccaaaaaaac aatcagtgga acaccactgg aagagagcga ggcccgtttc acggacccac       840
     ggctgggctt tggcaaaagc tcaaaaatgc aaaggagccc tgtagcgcag gcgccaagaa       900
     gtgtggagga aactccaaaa accgctgccg ctgaagtagg tgtcccaaac actgttgcag       960
     aggcggtaat ctctccaagg catgagtaca tgttgaaact ccgggccgag gaagaggatg      1020
     ccattctaaa atgtcgccag gcgctgcggc gcataaagac cgctgtcgct aaacaaaaaa      1080
     acatcagtct ggatgttaaa agcggggtat ccgacctaga cgaactactc gatatcctag      1140
     gacactgtag gaactcctgg aagaaactgg aagctgaagc aactaagcag aagcaattag      1200
     agccagcagc agaggcacgg atcttggaaa cggtggaaac acctaccatt caaaagagac      1260
     aagcccctag ccccctagag tctgagtccg gcaaaaaact ttgcaaggga caacagaact      1320
     tgtggcaaaa agtcaccaga aaagggactt tgaaacaaag agcggaaaag actacttcgg      1380
     cacccgcaga aaagccgaaa gtagtaaaac aaccagcaaa aaaagagaag aagaaacctc      1440
     cccgttcaga agcagtcctc ataaaacctg aaagtggaca aagctacgta gatgttttac      1500
     gaaacatacg cagcacaatc caacaagacg aaaaggcaaa cgtgagaggc ataaggaaaa      1560
     cccgatccgg ggcactcctt gtagaactga gcagagggga aaagttacat ccagaactag      1620
     ttgaaaaact aaaggctacc gttaaaaaaa cagctacggt agccgagtta aagcctacag      1680
     cgacagtgga gatccgagat ctagactcac taactgtaga gtctgaggtg gctgaggcag      1740
     tgcgacaagt ccttgataat tcatcagtgg acttgcgcat aaaagtcact gccccaaaca      1800
     gtcgagagca agtaagggcc tttgtaactt tagaaagcca attagcggag acgttgctga      1860
     gctcagacat taaaattggt tttgtcaggg ctaggcccag gatgtgtcaa cccatccgca      1920
     gatgctacag atgcttcggg gtcggccatc tgcagaccaa ctgcacagga ccggacagaa      1980
     gtggtggtgg catctgcatt agatgtggtg aatcaggtca caagatgaaa gactgcaaaa      2040
     aaccaccaaa atgctgcatt tgcacggatg cggggcgtac ttctgtcgat cacatgccgg      2100
     gatcgcagaa atgcccaagc acacgacaaa ctacagcaaa atgttgaaaa ttctccaagg      2160
     taatctacac cggagcaaaa cggcagatgc acttttgaca cagatagtag cagaacatgc      2220
     tatagatgta gtgatcatca gtgagcaata taagcgaaaa gagaacggag tttggttaga      2280
     ggacgacacc aagactgcgg ccatatggat ccccagtagt agtggacaac agccactaga      2340
     aagcaagatg ggaaactgct acgtctacgc acgcttcaga gaagtcgcag tagtcagttg      2400
     ctacctaacc cctagcgatg acataagcac cttccagaat aaactcgatg caatcgagga      2460
     tctcctcgtg gatcgacggc agcccttcat tgtggcaggc gatctgaatg cacgagcagt      2520
     ggactgggga atgtcgtcta ctaactctag aggacgaaaa attatggata tggccgctag      2580
     gtccgggtta gtggtagcaa accgcggaag cagacctacc ttccataggc cgggatgtga      2640
     aggcacaata cctgacgtaa cctttggatc cgaacacatc gtagatcgga taaaggactg      2700
     gaagatactc gatgacttca cgggaagtga tcacgagtat atatcatatg acttccaaaa      2760
     taccagtcag caaaaccacc catcatactc aagaaagact tctcatagat gggacataag      2820
     taaggtggat acaggcaaac tactagctga attagatagg cgagaacgac agttcgacgg      2880
     cacattgacg tcgaagcaag tggtcgaaag aagcctaacc gctatggaaa gagcgtgtaa      2940
     cgtatcgatg ccaaaaacgc acagcaaaca cggaggtaga cgacaggcgt actggtggaa      3000
     ccacgatatt gcagaaaaaa ggaaagtatg catacaatgt agaagaaggc taacaagggc      3060
     acgacgctct ggaaatttca cgacggaagc gttagcagcc aagattgcga gaaaagaact      3120
     gtcgattgct atcacacgca gtaagcatga caagtggaaa gagctctgca aagatataaa      3180
     taaagaccct tggggacttg gctacaagat agtcatgaaa aagctgagaa actacggagc      3240
     agtgccaaac gtggatgatg acacgatgga tcacatagtg gaaacactat ttccagcaca      3300
     catccacgag gcgcatgagc gagcacccgt agagctcgat ggttcagtcc cagatttcac      3360
     cgaggaagaa ctcaacattg cagctctctc cctgaagaac aagaaagcgc cgggaccaga      3420
     taatataccg gcagaaatac tgaaggtgat agcatcagga cgtcccactt ttctacttag      3480
     gatgtataac gcatgtctaa aagaaaggat attcccagaa gcgtggaaag aacagagact      3540
     ggtgctcatt agcaaaggca aaggcgatcc caacacaccc tcggcttatc gcccattgtg      3600
     tatgttaaac acagctggga agcttttaga aaagctcata agacctagac tactcgcagc      3660
     agtagaggct gctggaggac ttagccctag gcaacatggg ttcagagctg gaaaatccac      3720
     aatgggagct atcgatgaag tggttcaggc agccagagct acgcaaagag gaaatgcata      3780
     ctcgcgccca gttgttctgt tagcaacgct ggacgttaaa aacgccttta atagtgtaag      3840
     gtggactgat atgcttactt ccttggaaca ccgcttccag ataccggagt acctcatgaa      3900
     tatgatcagg agctatttgc aggatcgaat actcctgtac tccacgcaaa ctggaacaaa      3960
     acgatacaga gtaactggag gagctgcaca ggggtcaatc ctgggaccag acctgtggaa      4020
     tatcagctac gacgacatcc taagactgga aatgcctgaa gacaccttcc ttattggtta      4080
     tgccgatgat atcgcagccg tcattactgc cagaaacacc atagaggccc aaaagagact      4140
     tacccaagtc atgatccgca cacagacatg gctcagctct cgaggattgg agcttgccac      4200
     ccataaaaca gagttacttc tgttcacggg gaagcagatc ccaaccgaaa tagagatgcg      4260
     agtaagcgga aacctgataa ggacgcagag gacagtgaac tatctaggcg ttaggctgga      4320
     cagtaaactt accttctggg aacagctgaa gtatgccacg cggaaaacag cgacagcaac      4380
     ggggtctctg agtagactga tggcaaacgt tgacggcccg acggcaggaa aacggagact      4440
     cctcatggaa gcgacaaatg caatactgct atatggcagt gaagtatggg cggatacctt      4500
     agaggcgaat gtaaggcgaa aaccgatgct agctgtgcaa cgaagagcag ccttaaggat      4560
     aacatcggcg taccgcacag tctccggggc ggccgtgact gtgatagcag cagtcatacc      4620
     ggttgacttg cttgcccaag agcgcaaaaa aatatggaat cttcggcaaa gaggagaata      4680
     ctcagaacat gcggcaaaga gcatacgaca gcaaaccata gtctcgtgga aggcgagatg      4740
     gtcatgcgaa aggtatggaa gatggaccgc taaaataatc cccgatctgg agcagtggat      4800
     aaatagaaag cacggtgaaa cgtctttcta tttgacacaa ctactctccg gacatggata      4860
     ctttcgaaag tacctaaata aaatggggaa aactgccgaa tccagctgca tttactgcga      4920
     aaatgcaatg gacgatgcag aacacacctt cttcaattgc aaaagatggt cggaagaaag      4980
     aatcgacctg gcagaaacag taggtgaagt caaagtagag acgttagtac agcaaatgtg      5040
     cagcagcata gacgcttgga aaaaagtcta tgacttcgcc gaaaaggttc tgcggcggaa      5100
     gaagtatgac ctggacgcag gcacacagag ggcaacgctc atttagagca cacaatgggg      5160
     ttccaccttg aaggttaatg cgggatatct cctggttcca aggtggattt gagccccaga      5220
     agaggaggat tttttagtcg gtaagcagtt atgcagtccg acacaccggt caaagtgacg      5280
     acatgactga cggtgcataa agcatttttt cctacctcag cccaacaaaa aaaaaaaaaa      5340
     aaaaaaaaaa aaaaaaaaa                                                   5359
//
ID   R1-6_DPer   repbase;    DNA;    INV; 5048 BP.
XX
AC   .
XX
DT   09-JUN-2011 (Rel. 17.08, Created)
DT   09-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5048
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1672-1672 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Several copies are flanked by (CA)n
CC   microsatellites, like Waldo elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..1883
FT                 /product="R1-6_DPer_1p"
FT                 /translation="MSKNNTPITTNDSEGFNKSKKMARTPTGERTDAPLPA
FT                 LPGPEQHQKAQGSTALRDLGREITQLVEMLEDGKRRSIHQPMRDSIESIRV
FT                 LYELVAIQLHDEGAKAVIRTHQSSQTSPIFRPLPEPKRKQAAGAPTPRTKR
FT                 TKAAVEVQTTPGVAVEKDAHAERERKEPEETPFLTVTNRRRRKRPQKPTGA
FT                 LADKTRPDAIVIATKGEKTYAEILRKVRTDETLRGLGDAVARIRRTQKGEL
FT                 LLQLNKSGEETETFKSLVANTLKEHAEVRSLSHRVTVECKDLDEITTTEDI
FT                 CEALRSQVELAELSADDIQLRKAYGGTQTATIRLPAESAQKALKIGVLKVG
FT                 WVRCRLRERISVTKCFRCLEFGHMARQCSSKVDRSKLCRRCGKENHLAKDC
FT                 SLEPQCMLCKGTSADWKHVAGSGRCPLFRNALTKRSA"
FT   CDS           1883..4849
FT                 /product="R1-6_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRCTQLNLNHCEAAQSLLRQAVRERKTEVVLICEPFR
FT                 AIPGSGWTSSSCGKAAIWAVQIPPQEICATNEGFVRARLREVTFYTRCYAP
FT                 PSWDLARFQSMLAHIAEDARGRAPVIIAGDFNAWSVEWGSKETNARGTCLL
FT                 EEFASLDVILANDGRKLTYFKAGRGSIIDLTFMSVSLHRGSTWRVSEEFTF
FT                 SDHQAIHFECGAATKRQLAKITGPKWKGDHLDVETFTEYLRNASWSPARET
FT                 AEGLAQKLAKLMEEVCDAAMPRRKPCKRGAPCYWWNAEVNQLRKACLRARR
FT                 CYQRARGRPEFETRGEELRSAKRALKRAIKESKSACFRQICEEADVNPWGT
FT                 AYKVVTKRIRSQSTPEVTCPILLRSIVEALFPQHPYREESVSSQDSELWQQ
FT                 ISVEEVIAATRRIGDKKAPGPDGIPNKALKLGATTRPDVFVDTFNKCLREG
FT                 VFPEQWKVQRLILLPKGNKSPEEPSGYRPICLLDTVGKTLERIVYNRLQVV
FT                 IQEKEALSESQYGFRKAKSTVDAIKAVTDIASRAIEGIRWRFGTKEYCAVV
FT                 TLDIRNAFNSANWSRINEALGRIGVPTYLLRIIASYLSGRVLRYETEEGPK
FT                 LYRVTAGVPQGSVLGPLLWNIMYDDVLRLQLPQGCTLVGFADDLALVVVAK
FT                 ELRDVEATANEAIRIVSNWMENAGLDLAGHKTEAVLITSRKKVEYATFRVG
FT                 NATIKSQESIRYLGVMLDNRLNYRAHIEYVSQKASRMQAALARMLPNIGGP
FT                 KAGRRLLLARVVASILLYAAPVWSSTLSGNMSLRRKMSVPYRLCALRVVSG
FT                 YRTVSDNAALVLAAMIPVDILALEMTHVYEARAGMRTNASLETIRASERRA
FT                 SIEKWQARWDTATNGRWTHRXIPDIESWIGRRSGEMNYHLTQFLTGHGGYR
FT                 KYLHRFKHEDTPECPECSNESEDPEHVIYHCTRYRSSAEYFPRPEELMAFM
FT                 TESDENWQRVSNTLIAIQSDLRRCERERRVEESA"
XX
SQ   Sequence 5048 BP; 1392 A; 1280 C; 1500 G; 874 T; 2 other;
     cacccgtgtg gtgagcgggc agtagaatac caccacagca tgtcatagct tgtcgtatga        60
     ggcgactaag aagacacggg gatgttctgc tccctctaaa gagcactaaa gcaactcgta       120
     accgccggca catgccaggt atcccccgga taggtctaac acacctgtga aacacctagc       180
     taatacgaga aggcgactaa gacggagacc agtaaagtct taggatagga actggacccc       240
     cccttttttg gattgatgac cccagggctg acggaagcca gcattctagc actttagtac       300
     gcggaatgaa accccgccga aatggctgct aggttaatgc tgcttctgcc cccgtcccgt       360
     gaaaaattgg caaatctcta agcacgctcc ttgttccgta gccattaaat tggacgtaca       420
     ggctcagttg agtcactcct gactagcgcg gatccggctc tgaactcccg accccataag       480
     ggcgggagtc aaccctcgca tggcctccct gcttgcatag acaaccatgg gatcataacg       540
     cgactgtaca acagacaagg acaacggctt acgagttggg acccaacaaa atgagtaaaa       600
     ataacacacc cataacgacg aacgactcag aaggcttcaa taaaagcaaa aaaatggcga       660
     gaacgccaac tggcgagcgg accgacgccc cgctgccggc cctccctggc ccggagcagc       720
     accaaaaagc tcagggcagc acagcgctgc gcgatctagg acgagagatc acgcagctag       780
     tggagatgct cgaggatggc aagaggcgat ccatacacca acccatgcgg gactcgatcg       840
     agagcataag ggtgctgtat gagctggttg ctatccagct gcacgacgaa ggagctaagg       900
     cggtgatcag gacccaccag tcttctcaga cgtcaccgat tttcagacct ctcccggagc       960
     ctaagaggaa acaggctgca ggtgcaccaa caccccggac aaagaggacc aaggcagcgg      1020
     tcgaggtcca gaccacacca ggagtagcag ttgaaaagga cgcccacgct gaaagggaga      1080
     gaaaggagcc ggaggagacc ccatttctga cggtgaccaa ccggcgcaga aggaagaggc      1140
     cgcaaaagcc gactggagcg ctcgcggaca agacgcgacc agacgccatc gtcattgcca      1200
     ccaaaggtga aaagacctat gcagagatac tgcgcaaggt taggacggac gaaaccctgc      1260
     gtggactcgg tgatgcggtc gccaggatca ggaggaccca aaaaggagag ctactgctac      1320
     agctcaacaa gtcgggagag gagacggaga cgtttaaaag cctngtagcc aatacgctga      1380
     aggagcacgc agaagtccgt agcctgtcgc accgggtgac cgtagagtgc aaggacctgg      1440
     acgaaataac caccacggag gatatatgcg aagctctgag aagccaggtg gaattggcgg      1500
     agctgtctgc ggatgacatc cagctgcgaa aggcatacgg cggaacccag acggccacaa      1560
     tcaggctgcc agcggagagc gctcagaagg ctctgaaaat aggagtccta aaagtaggct      1620
     gggtaagatg cagactgcgt gagcgaatca gcgtcaccaa atgcttcaga tgtctcgagt      1680
     ttgggcatat ggcacgacag tgcagtagca aagtagatag gtccaagctg tgtagaagat      1740
     gtggaaagga gaaccacctg gcaaaggact gtagcctgga accacagtgc atgctctgca      1800
     agggaacgag cgcagactgg aagcacgtgg ccggcagcgg tagatgcccc ctgtttagga      1860
     acgccctgac taaaagatca gcatgaggtg tactcagctg aacttaaacc attgcgaagc      1920
     tgctcagtct ctcctgagac aagcagtcag ggagaggaag accgaagtcg tgctcatctg      1980
     cgagccattc agggcgatac caggaagcgg ttggaccagc agcagttgcg gcaaggcggc      2040
     catctgggcc gtacaaatcc ccccccagga gatatgcgca accaacgaag gatttgttag      2100
     agcgaggctt agagaggtaa ccttctatac ccgctgctat gccccgccga gctgggacct      2160
     agcgcgcttc caaagtatgc tagcgcatat agcggaagac gcgcgcggaa gagcccccgt      2220
     aataatagcg ggagacttta atgcgtggtc cgtagagtgg ggcagtaagg aaaccaacgc      2280
     cagaggcacg tgtctgctcg aggaatttgc gtccttggac gtaatactcg caaacgatgg      2340
     caggaagcta acctacttca aggcgggtcg agggtccatt atcgacctaa ccttcatgag      2400
     cgtctcactc cataggggat ctacgtggag agtaagcgag gagtttacgt tcagcgacca      2460
     ccaggcgatc cacttcgaat gcggagcagc aacgaaaaga cagctagcca aaattaccgg      2520
     acctaaatgg aagggcgacc acctggatgt ggaaaccttc acggaatatc tgcgcaacgc      2580
     cagctggagc cctgcgcgag aaacggcaga gggcctggct cagaaactgg cgaagctcat      2640
     ggaggaggta tgtgatgcgg caatgccaag aaggaagcct tgcaaaagag gagcgccctg      2700
     ttactggtgg aatgcggagg ttaaccagct aaggaaagcc tgcctacgag caagacggtg      2760
     ctaccagaga gcacgaggtc ggcctgagtt cgaaaccagg ggagaggaac tccgatcagc      2820
     gaaaagagcc cttaaacgtg ccataaagga gagcaagtca gcctgcttca ggcagatatg      2880
     cgaggaggct gacgtcaacc cttgggggac ggcatataag gtcgtcacca agaggataag      2940
     gagccagtca acaccggaag tgacctgccc gatcctgctt cgtagcatcg tggaggccct      3000
     attcccacag cacccgtata gggaggagag cgtctcgagc caagactccg agctgtggca      3060
     acagatttct gttgaggagg tgatagcggc taccaggaga attggggata aaaaggcacc      3120
     aggaccggac ggtatcccaa acaaggcatt gaagcttgga gcaaccacca gaccagatgt      3180
     atttgttgac acgttcaaca aatgcctacg ggaaggagtg tttccagagc agtggaaagt      3240
     gcagcggcta atacttctgc ccaaaggaaa taagtccccg gaggaaccat caggataccg      3300
     cccaatatgt ttgctggata cggtcggcaa aaccctggag agaatcgtct acaaccgact      3360
     gcaagttgtg atccaggaga aggaggcctt atcggagtcc cagtacggat tccggaaggc      3420
     caaatcaacg gtcgacgcca tcaaggcagt caccgacatt gcatccagag cgatcgaggg      3480
     aataagatgg agatttggca caaaggagta ctgcgcggtg gtgaccctgg atatccgtaa      3540
     cgcgtttaac tcagcgaact ggtctcggat aaacgaggcg ctcgggagaa ttggagttcc      3600
     cacctacctg cttcggataa tagccagcta cctgtcgggt agggtactga ggtacgagac      3660
     ggaggaggga ccaaagctct acagggtgac agccggagtt ccacagggat cagtcttagg      3720
     acctctactg tggaacataa tgtacgacga cgtcctgaga ctccagctcc cgcagggatg      3780
     cacgcttgtc ggtttcgctg acgatctcgc cctggtcgtg gtagccaaag agctccgaga      3840
     tgtcgaggcg acggccaacg aggcaatccg gatcgtatcc aactggatgg aaaacgcggg      3900
     attggacctg gctggccaca aaacggaggc tgtactcatc acgagtcgga agaaggtgga      3960
     gtacgcgacg tttcgcgtgg gtaatgcgac tattaagtcg caggagtcaa tccggtacct      4020
     aggcgtgatg ctggataacc gattgaacta ccgggcccac atcgagtacg tgagtcaaaa      4080
     agcctcccgg atgcaggcag cactcgcaag gatgctcccc aatattggtg gacccaaggc      4140
     aggtcgacgc ttacttctgg cgagagtagt ggcctcgatc ctactgtacg ctgcgccggt      4200
     gtggtcttca accctatccg gcaacatgag tcttagaaga aagatgtcag tgccatatcg      4260
     gctctgcgct cttcgagtag tgtctggata taggacggtg tcggataacg cagccctggt      4320
     cctcgcggcc atgataccgg tggatatact agcgctcgag atgacgcatg tatatgaagc      4380
     gcgcgcaggg atgcgaacta atgcatcgct agagaccatc cgtgcgtcgg aaaggcgggc      4440
     gtcgatagaa aaatggcagg caagatggga cacggccaca aatggacggt ggacccatag      4500
     amtaatcccg gacattgagt catggatagg gcggagaagc ggagagatga actaccacct      4560
     cacccaattc ctgacgggtc acggaggata caggaagtat ctgcataggt tcaaacacga      4620
     ggatactccc gagtgtcctg agtgttcgaa tgagagcgag gatccggagc atgtgatcta      4680
     ccactgcacg aggtaccgct caagtgcaga gtatttccca cgaccagagg agctaatggc      4740
     gttcatgacg gagtccgacg agaactggca gcgcgttagc aacaccctaa tagccatcca      4800
     gagcgatctg agaagatgcg aaagggagcg acgcgtagag gagagtgcct aaagtaggca      4860
     acccatcccc gcgaagtaat actttgcggt gatcccgcgg ggaatgaggt gtgcagctgt      4920
     gcgtggtggt gagtttagct gggaagcccc gaaggggtag tccagttcgt tgactggtac      4980
     gggccggtcg cgtctcttag agattctcac ccaccgtggc gtatccatgg aaaaaaaaaa      5040
     aaaaaaaa                                                               5048
//
ID   R1-6_DTa    repbase;    DNA;    INV; 4691 BP.
XX
AC   .
XX
DT   27-AUG-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4691
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5904-5904 (2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
SQ   Sequence 4691 BP; 1245 A; 1248 C; 1384 G; 812 T; 2 other;
     agcgttcaag agcagcttga agattctcag gtcacccgtc ctgagaaaac ccacgggcct        60
     ggcggttctc gtttattcaa gcgtccgact acgtcccacc cggagcgttc aaaagcacct       120
     tgaaaattcc cccccccccc cccccgaaaa aacccccggc cgccgcgaga agaggacgcg       180
     gtgcaggacg cggccaagcg tcaaagggac ccatgcagcc caactggcgg gcagaaaaca       240
     acctctgcaa agagggccaa agcggaccag gagctcacgg gactggaaca gctcgcggag       300
     attggagtgc ttctcgacga agtcatccat ctcacgagtg tcatgcaggt gcgtcacatc       360
     aatgtgacca tgaaagcaat gttctcgagg atgaagttct tccaagaaag tgcattgagc       420
     tccctcagcc aagctgggga ctcccatacg caaatagagc ccatggagtg catgaaatgc       480
     aaaggtccac tccgaaacag cgagagcaag gagcaacaga cgccggtatg tctaaaacag       540
     gacaacgcag cgcaaaccga gttctggcga aacgcgacac aaggcccgac gaccaccagc       600
     gcggtgcaga cagacccgtg gcgaaggctc agccaacccg acacggctct cgatggggga       660
     gagctcccga ctccatcagc gcaaccgtct acgcttagag cgcccccggg gtcccagcag       720
     gtagaaaaaa gaaacccacg agatgatgaa aaatccagag gcccccgtga aaatccagca       780
     gcgagaggca gcgctgggaa agacgcgacc actgcctgga gaaaggctgc tccgaaaaag       840
     cggccccgaa agcctcaccg cccggacgcc cttatagtgg aagccaatgg caagacctac       900
     agcgaagtcc tagctatggt cacccgtagg gacgacggga agctgcaaag cctcagctcc       960
     cgagttaaca aggttaggcg tacagcgacc gggaaccttc ttctggagct caacagaagc      1020
     gaggacaaca gcacggaaga aataaaagag agcctcgagg cggttcttgg agaagcgact      1080
     acggtgcgag cgctatccga aagcacgagg acgaagacgg tggtgataag cgacctggat      1140
     ccactagtgg tggccgaaga tgtcatcaaa gctctggtgg accaatttgc cgtgaacacc      1200
     gcatccgtta aactgaggag tctccgtcca tcatacaggg acactcagac ggcagtagtt      1260
     ggattggcaa gcaaagaggc agaagaggtt cttgggaagg gcaagatcaa gataggatgg      1320
     tccatctgca aagtgaagga gagggactcg cagcccaggt gctacaagtg cctggaagtt      1380
     gggcactttg ctgcaaagtg ccatagcaaa gtggacagaa gcgggtgctg cttcaagtgt      1440
     ggcaaaactg ggcacaaaat tgctcaatgc cctaatgaga gcgtatgctt tttatgcacc      1500
     gaaggaggtc caaaggcgag gaaccaccaa gcaggaagta ggcggtgtcc tcacgcagta      1560
     aaaagagccg tagccaaacc tcgtgaatgg aagtgatcca gataaacctg aatcactgtc      1620
     gggctgcgca ggacctactc ctgcagtctg tgagggaatg taaggcggat ctggctatca      1680
     tcagcgaacc ttacaaagtt gaggacaacg gcgactgggt aacggacaca tcaggcaagg      1740
     ccgcgatatg gctgtgcagg agaaacggca aatcattcct ggacgtgcgt aagggatcgg      1800
     gcttcgtccg agctcgaata ggcgaaatgt gggtctacag ctgctatcta gcacctagtc      1860
     tatccgaggt ggactttaga cgtgtactgg acacgatcgc cttcgatgca aggggccgcc      1920
     accctaccat catcgcaggc gacttcaact cgtgggccga agaatggggg tgccccagca      1980
     ccaacagcag ggggcgagcc ttactcagag cctttgcaac gctggacgtt gtgctgctta      2040
     atgaagggac gcaggagact tttaatcggg ctggagctgg gtctatcata gacctcacct      2100
     ttgtgagctc cccgctagcc cgacgttctc actggagaat cggcgacttc tgcacggcca      2160
     gcgaccacga ggccatacta tgcacagtgg gcatacgccc gggaccagga cccctgaacc      2220
     gggcagtcaa gggctaccgc caggagacgt tgaacgccga acagatgagc aggtgccttg      2280
     cggacatgca tttcgtcacg gaagcggacg ccgacaccaa tgctgacggg atagcagcca      2340
     gcatggagga tgcgtgcagg gcaggtatgc tgcagcgtaa accgtttagg agagaccatg      2400
     agcctgtacc ttggtggaac tccgaaatag cgacccttag aaggacttgc ctcagagcca      2460
     gaagagctct tcagcgctca agaaggacgg acagggccga ggctgcacac gccgccttca      2520
     agcaagccag gaggtccttg aagcacgcca ttcaggacag taaacgggaa tgtttcctga      2580
     agctatgtga cgcagccgaa caggatccgt ggggtggagc ctacagactc gtggtcaagc      2640
     gagtaaatgc aggcagccgc tctccaacgg accccgaaac cctgagtgag atcgttcgca      2700
     cattgttccc ttcgggtagc gccaaggaga gcacactgca cgaaacggga cctacgtggg      2760
     agttcagggc cataacggag accgaggttg ctgaagcagg acgcagcctg cagaacaata      2820
     aagccccagg acccgacgca gtgcccaaca aagcaatgaa gctggcgctt gcgcttcagc      2880
     cgggcatttt cgcggcgctc tacaacgcct gcctgcgcga gggaacattt ccacggagat      2940
     ggaaagttca aaacctgttg ctcctgaaca aacctgggaa gccacctggt gaagcttcct      3000
     cctacaggcc aatttgtctg ctcgacacag ttggcaaagt gttcgagaag ctcatctcga      3060
     aacggctaaa tctggccata gatgcagctg gtggcctctc ccccacccag tttgggttcc      3120
     ggaaaggaaa gtctacatta gacgcgatcc gaacggtcac cgggatagca gcggaagcca      3180
     tacgcgggaa gcgatggaaa ggcggcacga aaaaatactg tctgctggtc acgcttgaca      3240
     tcaagaatgc cttcaacact gccaactgga cagggattat gcaggcccta aggcggcaac      3300
     ggataccgga gtacctcatc aagataatcg acagctacct tgacgaaagg gtgctgcggt      3360
     tcgatacgag cgacggccca aaagagtaca atgttactgc tggggtgcca caaggatcgg      3420
     tcctgggccc cttgctgtgg aacataatgt atgacggagt gctgaggctt cccatgcctg      3480
     ccaacgtcca tgtgactgga ttcgcggacg acgtcgccat tacgattgtg gctaaggagc      3540
     cagccgatgt ggaggccatg gccaactcag cggtaaggaa ggtggagtca tggctgtcac      3600
     ttgccgggct ccaactcgcg gcacacaaga cagaggctgt ccttataagc agccggcaat      3660
     gcgtcgagac agccaaactg acggttggcg gggttgaagt agtttcgcaa agagcagtaa      3720
     aatatctagg cgtcatgatt gacaccaggc tgtcttttaa agagcacctg gagtatgcca      3780
     acaagaaggc cgcagcgacc gccaggtcgc tctcgcggat tctactgaac acgaggggcc      3840
     caaagcagga aaggaggaaa ctcttagcga gcgtcgttac gtcccaagta ctatatgccg      3900
     ccccggtatg ggccaaggcc gccacgacgc catcgtacat gaggggcgtg gaacgcaccc      3960
     acagactatg tgccatcaga atatcctgcg ccttccggac gatttctgag gaagcggcgc      4020
     tggtcatcgc tggtctagtt ccgataaacg agctggtaag agaggcagca gaagtagagg      4080
     aagcggtaac gagcacggac gacctatcta ggcgtgaggc gcgacagccc gcgagaagaa      4140
     gatcaatttc tcagtggcag gagagatggg actccgcgac atctgggcgc tggacccatg      4200
     cactcattcc agtcttgagt ccatggctgg aaaggaagca tgggcaggtg gatttctacc      4260
     tgacccagat tctgagtgga cacggttgct tccggtcgta cttgaagaag tacggtcacg      4320
     acacaaggga cggatgccca acctgcggtt ctggaatcga ggaggacgcg aaccacgtcc      4380
     tattcgagtg cgtgcggttc ttagaggaca ggaccgcctt ggaaacggcg accggcgtca      4440
     gcattagccc cagcacgcta gtgccaacaa tgctgaaagg ccaactggag tgggacgcga      4500
     cggccaattt cgctgcgtct ctgatgcaga aactcaggaa agctgagaga gagaggagag      4560
     aamtggccac staagctgcc gcggttgtgc gaagcaatgc tttgcggccg taccgcacaa      4620
     cttcttcagt ttatgtccat ctatatgtat atttttttag tagttgtaag gaaataaagg      4680
     aatacaaaaa a                                                           4691
//
ID   R1-6_DWi    repbase;    DNA;    INV; 4944 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4944
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1967-1967 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~99% identity.
CC   This family shows no target site specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           225..1826
FT                 /product="R1-6_DWi_1p"
FT                 /translation="MQKIHGKMVGKTSTTPGGSHSCGNPPMVQAMAGARIL
FT                 EAPTTVITTTTAPVANLADAADIATSSSSSSSKKHGLCTNGGNPFAKGSKI
FT                 ARTPPQALHSAPPAIRGLLVSAGCEEETPKRAREASPCNTESGTTPKKLKG
FT                 PPQAPNILMAELGKILDEIIDGSVNKKAPPTRNTTQWMKEAHLKMKSIHLQ
FT                 VMEQMQEYPVKAGPCLACATRNSAAKTNKEVTKRKDTRTEDPPTANKNDRR
FT                 RKKKSPIQERTPRTRSPAATAVSPGPVVAETTHATNIAGGKWHKVKSKPRP
FT                 IKKKRPDVIMVKCKDPANYAMVLKSVHTDAGIQQFKENVCAVRRTAAGELL
FT                 LQLTKPADEATVKLQQAVKQALGDTADVKAISDKAMVEIKDLAEFHTADDL
FT                 LLAVLELIDEDLPAECHPKMRKAYSGTQTATMMVNPNLANKLLQAGKIRVG
FT                 MCICRVRLKTEPRRCYKCLDFGHTAARCRSKHDASKLCFNCGSKDHASKQC
FT                 DQKAACILCTRHKRSNTAHNTLSRACPLFVEAGSNRKD"
FT   CDS           1804..4752
FT                 /product="R1-6_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RLAVTGRIKFLQLNLNHCRSAQDLLKQTVRDLKVDFS
FT                 ILCEPYSHIQDHSWTQNHRYGAAIWSNSRTHLENQHSADGYVRARYNGVYV
FT                 YSCYIAPSKHIDEFCSILDGLVEDARTHTPTIIAGDFNAWATEWGSQRTTR
FT                 RGRALLDAFATLNISLLNVGNTHTYNKAGRGSVIDLTFASPCLARSAQWAV
FT                 SDIYTHSDHFAIVCSIKSCPPAHTPTTFYSWAPSTLSEEALFTMMTQVTRS
FT                 SSTDADTQANHMGDILRRACDAAMIRKRHGLNKCKPVHWWNARIADARRQC
FT                 HQARRRQQRARRMPTFPELLADYKRKRANLNMEIKRSKADCWKKLCADADA
FT                 QPHGTAYKLVMGKLARRIMPTDPTKLGHIVATLFPSRPTRNLAASGTPCAP
FT                 IFTDVGEVVEAGKRINVHKAPGPDGVPALVIKLLVCKHASTFVELFNTCML
FT                 QREFPTRWKLQRLVLLPKGDKIDDPSAYRPLCMLDVIGKLFERIICNRLEK
FT                 ELEQRHGLSDWQFGFRRKRSTINAISSVVEIAAKAIEGQRWKGGNKKYCLI
FT                 STLDVRNAFNSASWDSIIASLERLNISEYIINLICSYFRDRVLLYDTAAGP
FT                 RKHTITGGVPQGSVIGPTLWNVMYDTVLRLDMPTDTRIVGFADDIAIVTVA
FT                 KDIQQAEENTNAAVFRILEWMEANSLSIAAHKTEAVLISSRKKVETARIEV
FT                 AGCSITSKPAIKYLGVMMDHRLTFKAHLQYTADKAAKATSAITRLMANVGG
FT                 PKQRSRWLISTVVRSIILYAAAIWAPAMSSPTYSRDCRSSYRTCALRTICA
FT                 FRTVSEDAALVLSDMAPLDLLANEARNRDPPPVRRETTLTNWQRRWRDSNH
FT                 GSWTRRLLPDIRPWLNRKHGQTDFYLTQLLTGHGCFKSYLHRFKHETDPFC
FT                 THCAGNIEDAEHVLFVCPRYSAEREELSLGIGRPFIVNDFMDILLSSQNNW
FT                 LAVSHMAAVIMQSLRRAERQRNQNFSSR"
XX
SQ   Sequence 4944 BP; 1456 A; 1290 C; 1285 G; 911 T; 2 other;
     cacaacakta gcctccaaag tgctgcgtgc ttttgggcgc tcgcttaggc gcgattttta        60
     aaaatcccct atagactgag taagtcttaa gttaccgact agcaatcttt tcaggttaca       120
     agaagaggac caacaaaccc acagggcctc tgaggcacga agaggactgt ggtctgcgct       180
     tgtgccagcg gccacagcgt ataaaacctg gcagcaggta taaaatgcaa aaaatacatg       240
     gaaaaatggt tggaaaaacg tcgactactc caggtggcag ccacagttgt ggaaatccac       300
     ccatggtaca agccatggca ggggcacgga ttctggaggc cccaacaacc gtcatcacca       360
     ccactactgc accggtggca aacttggccg atgcagcgga catagctaca agcagcagca       420
     gcagcagcag caaaaagcac ggactgtgca caaacggagg caatcctttc gccaaaggaa       480
     gcaagatcgc caggacacca ccgcaggctc ttcactcggc cccgccagcc attcgaggat       540
     tacttgtctc agctggatgc gaagaagaga cacccaaacg ggcaagggaa gcaagccctt       600
     gcaacaccga aagtggaacc acaccgaaga aactaaaagg accgccgcag gcaccaaaca       660
     ttttgatggc cgaactgggc aagatcttag acgagatcat agatggctcg gttaataaaa       720
     aggctccccc gacgcgcaac acaacccaat ggatgaagga ggcacatctt aagatgaaat       780
     ccattcacct acaggtaatg gagcagatgc aggaatatcc ggtgaaggct ggaccatgcc       840
     ttgcatgcgc aacgcgcaat tctgccgcca aaaccaacaa agaggttacg aaaaggaagg       900
     ataccaggac ggaagaccca ccgacagcca ataagaatga caggaggagg aaaaagaagt       960
     cgccaatcca ggagcggact ccaaggaccc gaagccccgc agcaacagca gtatcaccag      1020
     gaccagtagt agctgaaaca acwcacgcaa cgaacatcgc tggagggaaa tggcacaagg      1080
     tgaaaagcaa gccgagaccc attaaaaaga agaggccaga cgtcatcatg gtgaagtgta      1140
     aagacccagc caattacgcg atggtactga agtcagtcca cacagacgcc ggaatccagc      1200
     agttcaagga gaatgtatgt gcggttcgac gcacagcagc cggggaacta ctcctacagt      1260
     tgaccaagcc agcggacgaa gcaactgtta aactgcagca ggcagtgaaa caggcacttg      1320
     gagacaccgc tgatgtcaag gcgatcagcg ataaggccat ggtcgaaata aaggatctcg      1380
     cagaattcca cactgcagac gatcttctgc tcgccgtcct ggaactgatc gacgaggatt      1440
     tgccggcaga atgtcaccca aagatgcgga aagcgtacag cggtacacag accgcaacaa      1500
     tgatggtgaa cccgaatctg gcgaacaagc tgctgcaggc gggcaaaata cgagtaggca      1560
     tgtgcatatg ccgagtacgc ctgaagactg agccgagacg gtgctacaag tgtctggact      1620
     ttgggcacac agcagctcgg tgcagaagca agcacgacgc atccaagcta tgcttcaact      1680
     gcggtagcaa ggatcacgct tcaaagcaat gtgaccagaa ggcagcgtgc atactttgca      1740
     cacgacataa gcggagcaat acggcgcaca acacgctcag cagagcttgc ccgttgtttg      1800
     tagaggctgg cagtaacagg aaggattaag tttctacagc ttaatctaaa ccactgcagg      1860
     tcggcacagg acctcttaaa acaaactgtg cgggacctga aagtagattt ctcaatcttg      1920
     tgcgagccat attcccatat acaggaccac agctggacgc aaaaccaccg ttatggcgcg      1980
     gcaatttgga gcaacagcag gacacatctg gagaatcagc acagcgcgga cggatatgta      2040
     agggcgaggt acaatggagt atatgtctac agctgctaca tagcaccgag caaacacatc      2100
     gacgaattct gcagcatact ggatggatta gtggaggacg ccagaaccca cacgccaacc      2160
     atcatagccg gcgacttcaa tgcatgggca acggaatggg gtagccaaag gaccactaga      2220
     aggggcaggg ccctgctgga cgcttttgcc acactcaaca tcagtctgct caacgtaggc      2280
     aacacccaca cctacaataa ggctggcaga ggctccgtga tcgacctcac gtttgctagc      2340
     ccttgcctag cccgcagcgc gcagtgggca gtttcggata tctacacgca cagcgaccac      2400
     ttcgccattg tgtgctctat caagagttgt ccacctgcac acacaccaac gacgttctac      2460
     agctgggccc caagcacgct gagcgaagaa gcgttattca ccatgatgac ccaagtgaca      2520
     aggagcagca gcacggacgc ggacacccag gccaaccaca tgggcgacat tcttcgcaga      2580
     gcatgtgatg cagccatgat acgcaaacgg catggactca acaaatgtaa gccagtacat      2640
     tggtggaatg ccaggattgc ggatgccagg aggcaatgtc atcaggccag acgacgacag      2700
     caacgtgccc gcagaatgcc cacgtttccg gagctgcttg cagactacaa gcggaaaaga      2760
     gccaacctaa atatggagat caagagaagt aaagcggact gctggaagaa gctgtgcgca      2820
     gatgcagatg cgcagccaca tgggactgcc tataaactgg ttatgggcaa actcgccagg      2880
     cgcataatgc caacggatcc aaccaagttg ggtcacattg tagcaacgct attcccttca      2940
     aggccgacga ggaacttagc agcgagcgga acaccatgtg caccgatatt cacagatgtt      3000
     ggtgaagtcg tggaagcagg gaagaggata aacgtacata aggccccggg cccggacggg      3060
     gtcccggctc ttgtaatcaa actgctagtt tgcaaacacg cgtcgacgtt tgtggaactt      3120
     ttcaacacat gcatgctgca acgggagttc cctacgaggt ggaagctaca aaggttggtc      3180
     ctgcttccca aaggtgataa aatagatgac ccatctgcat acagacccct gtgtatgctt      3240
     gatgtgattg ggaaactttt tgagcgcatc atttgcaaca gactggagaa ggaactggag      3300
     caacgtcatg gactgtcgga ctggcagttc ggattcagga ggaaacgcag cactatcaac      3360
     gccatcagtt cggtggtaga gatagccgct aaagccatcg aagggcaacg ctggaaaggc      3420
     ggcaacaaaa aatactgcct tatatcaacg ttggatgtac ggaatgcttt taattcggcc      3480
     agctgggact ccattatcgc gtccctagag cgattaaaca tatctgagta catcattaac      3540
     ctgatatgca gctatttccg ggatcgggtg ctactctacg acacagcagc tggtccacgg      3600
     aaacacacca tcacaggcgg agtaccccaa ggatcagtga tcgggccaac attgtggaat      3660
     gtcatgtatg acactgtcct gcgattggac atgccaactg acactcgcat agtgggattc      3720
     gcggacgaca tcgccatcgt cactgtggcc aaggatatcc agcaagcgga agaaaacacc      3780
     aatgcagcag tgttcaggat tctggaatgg atggaggcaa actcactatc catagccgca      3840
     cacaaaaccg aggccgtgct cataagcagc aggaaaaaag tggaaacagc caggatcgaa      3900
     gtcgccggat gctcaataac atcaaagcct gccattaaat accttggagt catgatggac      3960
     cataggctaa cattcaaagc ccacctgcag tataccgcag ataaagctgc gaaggccacg      4020
     tcagctataa ctcggctcat ggctaacgtc ggcggcccca agcaacggag cagatggctc      4080
     atctcgacgg tggtaaggtc catcatccta tatgccgccg ccatatgggc accagcgatg      4140
     tcatccccca cctacagccg ggactgcaga tcgtcgtacc gaacatgcgc gctcaggacc      4200
     atatgcgcgt ttaggacagt ctccgaagat gccgccttgg tgctgtctga tatggcccca      4260
     ctagacctct tggctaacga ggctagaaat agagatccgc cgccagttag aagagagacg      4320
     actctgacta actggcaacg cagatggcgt gactcaaacc atgggagctg gacaaggcgc      4380
     cttctccccg acattcggcc atggcttaat cgcaaacatg gccagactga cttctatctg      4440
     acacagttac tgacgggaca tggatgcttt aaatcctact tgcataggtt taaacatgag      4500
     acggatccct tttgcacaca ctgtgcgggg aatatagaag acgcagaaca cgtcctgttt      4560
     gtctgtccta gatattctgc tgaacgggaa gagctaagcc taggcattgg gaggccattt      4620
     atagtcaacg actttatgga tatcctactt agctcgcaaa acaattggct agctgttagc      4680
     cacatggcag cagtcatcat gcaatccttg cgtcgcgctg aacgtcagcg taaccaaaac      4740
     ttcagttcta ggtaaactct agacgaggca tacgtgccat ctccccctcg tgaagtagta      4800
     cttcagcgtt ggttccgcga gagggatacg gagcataggg taggttttag tgcggtgcgg      4860
     tgaccactaa ccaaggtcga taccaagtcc cacacttcgg ctttcaatgc tttcccccct      4920
     atttataaaa aaaaaaaaaa aaaa                                             4944
//
ID   R1-6_PPo    repbase;    DNA;    INV; 159 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-6_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-159
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3137-3137 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 159 BP; 39 A; 43 C; 40 G; 37 T; 0 other;
     aggttccggt gtgttccttg gagatcccgg aaccttcgtc atgtcactag aggatggcca        60
     ccgagggggt tttagtaggt gaaatcctac ataaccctgc cttcccccca gaaggcaggg       120
     tatcttttga agatttcccc cccgacacca aaaaaaagg                              159
//
ID   R1-7_BTa    repbase;    DNA;    INV; 6047 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6047
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 721-721 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus. 5'-end is complete.
XX
FH   Key           Location/Qualifiers
FT   CDS           424..2343
FT                 /product="R1-7_BTa_1p"
FT                 /translation="MKPCIQHDQVHCDLCKCSVHEVTDCHKTDCIKEKHFS
FT                 LSAPTALSKVKTKRNESPLRTSTPTPESSATISQSNPPTDTDEKEEKMDYL
FT                 EASLKRGRNDDPNSSISDIDKSGKKKQALDSNVLPDKSSTGEQKDADINPG
FT                 KVSDSDSDDGFFVPKSSIDVTKKNPPKYSRGRGRNKRTPSTPRNRSASATG
FT                 SKNTKQTKKKEDPLNSDPIISNNEPNAQNQKPREENTHKPSKVTLESLFGH
FT                 IDTPNEFSWSILKEMLFALRDSVTTNENHFRDQIEFWKNKYEKTQAELDSL
FT                 KSKIEKQMSDFNNKLTNVQQTVSKIDKKKNDFPALNEKLSYSEQLKKNKQN
FT                 ITYGVVNRASTEVTILLESNVSGKTIDEQHLFDLIHKEIPSNLGKIFSISL
FT                 NKNKDFIIRAKTDDRAKLESALKNCLKAKPVSIKTTYPSEVVSFGPIPANM
FT                 SESQILKEIHSELKNKYTLENIQGKTHIFRTISLRNTYGTPKNLVYIRIES
FT                 PLLEDVLIQRDFYLSTFGFAKAEPKILVSPCMNCLDFYHGTKQCVKNEILC
FT                 LKCGKNNHKIAECEEETAKCVNCVRHKMKDNLDHLPTSPKCPIYIKALEQK
FT                 CKRYDNSDNFICEQFRNLSPLINNSQQSNNVIIHDLTQQTQS"
FT   CDS           2343..5936
FT                 /product="R1-7_BTa_2p"
FT                 /translation="MNTRTNNRFAMLELDSESDSINLIKADELICQHTRSI
FT                 SKCIICFDPRSYSDINCIWCRHNIKVKNCSKCKDMLLPPLKLSCGRIIRPI
FT                 SLPPLWSTAYSSDEADNSISSSARELHRQENVPFCYDSSEESDTFITERDK
FT                 IVFKKVDENEVIISKNMPTNTLNIFRNNNNTTQADISILSCNVDINSVNSV
FT                 SSTKAELSILLGNVNTNPHSHDLNKQIVQQRQIGCYLFTEPNVAKASFDNL
FT                 YSSLDLWVSACTTPFLTGSTSDWEAGPFYILFTWSSITIIGIYLSPNDCNI
FT                 EMQKALFILETRIKRIKGPFVILGDFNGRSPAWGDLVYNSRGRIIENWIFE
FT                 NELVIHNNHDTFTPTFINSRGFHSIPDLVISSPDLTDNINIEVLDSYTLSD
FT                 HRSIVVSIRQELSTSNNNKVSIENSGWFVNKEKFPDFIKTIKKLTTKYTEE
FT                 SKLSPSLCDKIISEASDAHFVKKSTVTPFTPLYWWTKEIGNIRKNCQKLRR
FT                 KLMELRRKKLPLLDKLAELDNLKKELTSKIAESKKKKYKDLINELDTDIWG
FT                 KGYKIFRRRLKNPKSHDNSTLSEEELLDQISKLFPDHGDVVWRDTIVNNSE
FT                 IPEISMEEVRLAIKKLKNGKAPGPDGILPVITKLFIDTNIKIFTEMCNNLL
FT                 KEGSFPDIWKEAKLILFPKIKPGDPQKKYRPICLINTLSKIFEHILAHRLS
FT                 SIFKFDNRQHGFRKGKSTITAMESVKRILDYHRRKPVSRRGLLCLVSLDIK
FT                 NAFNSISWLDFISTLCKRNVPPYLIRIMKSYLTDRFLVFPDFKIKLNSGGA
FT                 QGSILGPLIFLIIFDEIVRMKLGPNVDKNVYADDTLLAFESENQETLLKET
FT                 ESSSKKLKSKIRKKKLFIEDNKTEALILSNSTKDKNLKIKIDDTVIKTSDI
FT                 MKYLGFYLTKNLNFNKHLELTCQKLKKTANNYNQILPNCFGPTFLRRKIIF
FT                 HSLLSILFYGITIWISATCWKKTTKLIESSIRPLKKTLICGYKSVSNFAQD
FT                 IISGVPPATLLIEMKLRIARGEDRLIVEKEIKDKWREIWINEKGNFWIKTI
FT                 INDLDEWLDRDHGNPDFYMTQFLSGHGAFGSYLAKRNLIDSPLCTCGEIDT
FT                 PDHTFFSCKLKLNLKENLESEMKQPINAKNLLRLMLESKHNWYLGYKYIKV
FT                 ILDDKINKFKPSSNKTNNSAPTANTPDVMPPGGPGALLS"
XX
SQ   Sequence 6047 BP; 2175 A; 1234 C; 954 G; 1684 T; 0 other;
     ggttggcaac tgcgctcttg actcgtcctg acgtgtttcg ttcagctctc cttaaaacca        60
     acccaaaaac ctgttttact ttgttttgtg cctcagtttt ggtaccgttt taatcggcag       120
     cacaagctgt atctttcggt gcttcgtctg aactttcaaa atccccaggg attaagtctt       180
     aacatcgttc ttagtgatgt gattgtggcc taaagtgatt gtgtaacaga aagttgccaa       240
     ttatagctgc tctcacatca atttttcttt tcttgcgcat gcgcaattta aacaaacttt       300
     ggcaactacg gctagacaac aatctatgct ttagatcgtt atagtgatta gactcactcc       360
     tcatcggctg agacggcggc ggcgcggcgc gcggcccaca tagccgcccc ccctccctgc       420
     agtatgaaac cctgcataca gcacgatcaa gtgcactgtg acctgtgcaa atgctcagtg       480
     cacgaagtaa ctgattgtca caaaactgac tgtattaaag aaaaacactt ttcactcagt       540
     gctcccacag ctttgtctaa agtcaaaacc aagagaaatg aatctccact aaggacttcc       600
     actcccaccc ctgaatcctc agcaactatc tctcagagta acccgcctac tgacactgac       660
     gaaaaagaag aaaaaatgga ctaccttgaa gcatctttaa aaagaggcag aaacgatgat       720
     ccgaactcct ccatcagtga tatcgacaaa tctggcaaga agaagcaagc ccttgatagc       780
     aacgtcctcc ctgacaaatc ctcaaccggc gaacaaaaag atgccgacat caatcctgga       840
     aaagtatccg actccgactc cgatgatggc tttttcgtac cgaaaagttc aattgatgtt       900
     actaaaaaga atccacccaa atactcaaga ggaagaggaa gaaacaaaag gactccttct       960
     actcccagaa accgcagtgc atcagctaca ggatccaaga atacgaaaca aacaaagaag      1020
     aaagaggatc ccttaaactc agatcctata attagcaata atgaaccaaa cgctcaaaac      1080
     cagaaacccc gtgaagaaaa cacccataaa ccttctaaag ttacccttga atcccttttt      1140
     ggccatattg acacccccaa tgaattttcc tggtcgattt taaaagaaat gttgtttgca      1200
     ttaagagatt cagttacaac taacgagaat catttccgag atcaaatcga gttctggaaa      1260
     aataaatatg aaaaaactca agcagaacta gactctttaa agtcaaaaat tgaaaaacaa      1320
     atgtccgatt tcaacaataa attaaccaat gtacaacaaa ctgtcagtaa aattgataaa      1380
     aaaaagaacg actttccagc attaaatgag aaattaagct acagtgaaca gctcaaaaaa      1440
     aataaacaga atattaccta tggagttgta aatagagcct caactgaagt cactatttta      1500
     ctagaatcta acgtctcggg gaaaacaatt gatgaacaac accttttcga tttaatccat      1560
     aaagaaattc cctccaactt aggcaaaatt ttctcgatta gtttgaacaa aaataaagat      1620
     tttattataa gagccaaaac tgacgataga gcgaaattag agtctgcatt aaaaaattgc      1680
     cttaaagcca aacctgttag cattaaaact acttacccct cagaggttgt tagctttggt      1740
     ccaatccctg caaatatgtc agagtcccaa attcttaaag aaattcactc cgaactcaaa      1800
     aataagtaca ccctcgaaaa cattcaggga aaaacacata tatttagaac aatctccttg      1860
     agaaatactt atggaactcc aaaaaatctt gtttacatca gaatagaatc accgttactc      1920
     gaagatgtcc taatccaaag agacttttat ttaagtactt ttggtttcgc caaagccgaa      1980
     cccaaaatct tagtttctcc ctgcatgaac tgcttagatt tttatcatgg aactaaacaa      2040
     tgtgtcaaaa atgaaatatt atgtctcaag tgcgggaaaa ataatcataa aattgcagaa      2100
     tgtgaagaag aaaccgcaaa atgtgtcaat tgtgtaagac acaaaatgaa agataattta      2160
     gatcatcttc caaccagtcc caaatgtcca atctatatta aggccctgga acaaaaatgc      2220
     aaacgatacg ataactcaga caattttatt tgtgaacagt ttcgtaattt atcgccatta      2280
     attaataact cacagcaaag taataatgta atcatccatg acctcactca acaaacccaa      2340
     tcatgaacac acgcactaat aatcgttttg cgatgctcga acttgattct gaatctgact      2400
     caattaatct tatcaaggct gacgaactaa tctgtcaaca cacacgttca atatccaaat      2460
     gtattatttg cttcgatccc agatcctatt ccgatataaa ttgtatctgg tgcagacata      2520
     atattaaagt caagaattgt tctaaatgta aagatatgct gctcccccct ctaaaacttt      2580
     catgcggcag aattattaga ccaatttcac ttcccccttt atggtccacg gcatatagct      2640
     ccgatgaagc cgataattca atctcatcat cggcacgtga attacacaga caagagaacg      2700
     ttcccttttg ttatgattca agcgaggagt ccgacacttt tatcactgaa agggacaaaa      2760
     ttgtattcaa aaaagtagac gaaaatgaag tgattattag taaaaatatg cctaccaata      2820
     ccctaaatat ttttcggaat aacaataaca ctactcaagc tgatatatca atattgtcat      2880
     gtaatgttga tatcaactct gttaattctg tttcatcaac caaagctgaa ttatcaatcc      2940
     ttttaggtaa tgtaaatacg aatcctcatt ctcatgatct taacaaacaa atcgttcaac      3000
     aacgccaaat cggatgttat ctctttacgg aacccaatgt agcaaaagct agctttgata      3060
     acttatattc aagtttagat ctctgggtgt ctgcctgcac aacaccgttt cttacggggt      3120
     ccacctctga ttgggaagcc ggtccctttt atattctgtt tacttggtcg tctataacaa      3180
     taattggtat atatctctcc cccaatgact gtaacataga gatgcagaaa gctttattta      3240
     ttttagaaac tcgtattaaa agaatcaaag gcccttttgt catattaggc gattttaatg      3300
     gaagatcccc cgcctggggc gacttagttt acaactccag aggacgtata atagaaaatt      3360
     ggatctttga aaatgaactt gtcatccata ataatcacga tacttttacg cccactttca      3420
     taaattccag aggctttcac tccattccag acctggtaat ctctagtcca gatttaactg      3480
     ataacattaa tatagaagtt ttagattcct acaccctttc tgatcacaga agtattgttg      3540
     ttagcattcg acaagagtta agtactagta ataataacaa agtatctata gaaaattctg      3600
     gttggtttgt aaacaaagaa aaattcccag actttattaa aactattaaa aaactaacta      3660
     ctaaatacac agaagaatcg aagctttctc catctctatg cgataaaata atctctgaag      3720
     cctctgatgc tcactttgtt aaaaaatcaa ctgtaacccc ttttacccct ctatattggt      3780
     ggaccaaaga aattggcaat ataagaaaaa actgtcagaa actaagaaga aaattaatgg      3840
     aacttagaag gaaaaaatta ccgttacttg ataaattagc cgaattagat aatctaaaga      3900
     aagaacttac ctccaaaatt gccgaatcca aaaagaaaaa atataaagat ctaatcaatg      3960
     aactagacac tgatatatgg ggcaaaggtt acaaaatttt cagacgtcgc ctcaagaacc      4020
     ccaaatccca tgataattca accctttctg aagaagaact actggaccag atttccaaac      4080
     tatttccaga tcatggagat gtcgtctgga gagacaccat agtcaataat tctgaaatcc      4140
     ctgagatttc tatggaagaa gttcgcctgg caattaaaaa gctaaagaat ggaaaagccc      4200
     ctggtcccga cggtattctt cctgtgataa ccaaactctt tatcgacact aatataaaaa      4260
     tttttactga aatgtgtaat aatcttctaa aagaaggctc tttccctgac atttggaaag      4320
     aggcaaaatt gatattgttt ccaaaaataa agccaggtga tcctcaaaag aaatacaggc      4380
     ccatttgcct aattaacacc ctttcaaaga tttttgaaca catactcgct catagactct      4440
     ctagtatttt taaatttgat aacagacaac atggtttccg caaaggtaaa tcaaccatca      4500
     cggccatgga atctgtcaag aggatcttgg attatcacag gaggaaacct gtaagcagaa      4560
     gaggtcttct ttgtttagta tctctcgata taaaaaatgc attcaatagc attagctggt      4620
     tggatttcat aagcaccctt tgtaaaagaa atgtaccccc ttacctgata agaattatga      4680
     aatcttatct gacagacaga tttttagtgt ttcccgactt caaaattaag ttaaattctg      4740
     gtggtgccca aggtagtatt ctgggacctc taatcttcct tattatcttt gatgaaattg      4800
     tgagaatgaa acttggtcca aatgttgata agaatgtcta cgcagacgat acccttctag      4860
     ccttcgaatc ggaaaatcaa gaaacactac ttaaagaaac tgaaagctct tctaaaaaat      4920
     taaagagtaa aatcaggaag aaaaaattgt ttatagaaga caataagaca gaagctctaa      4980
     ttttatcaaa tagcaccaaa gacaaaaatt taaaaattaa aatagatgac actgttatta      5040
     aaactagcga tatcatgaag tatcttggat tttacctgac caaaaatctc aactttaaca      5100
     aacacctaga attaacctgc caaaaactta agaaaacagc caataattac aatcagattc      5160
     ttcccaactg ctttggtcca acctttctta gacgtaagat cattttccat tctcttctct      5220
     caattctttt ttatggcata accatttgga tttcagccac ctgttggaag aaaactacta      5280
     agctaattga atcctctatc cgtccattaa aaaaaaccct catttgcggg tacaaatccg      5340
     tgtcaaactt tgcacaagat atcatttccg gagtcccccc agctacttta ttaatagaaa      5400
     tgaaactgag aattgcaagg ggcgaggata gattaattgt tgaaaaagaa attaaagaca      5460
     aatggagaga gatatggatt aacgaaaagg gcaatttctg gataaaaacc ataataaatg      5520
     accttgatga atggcttgat cgcgatcacg gtaatcctga tttctatatg acacagttct      5580
     tgtctggcca cggcgccttc ggcagttatt tagctaaaag aaacttgatt gattctcccc      5640
     tttgcacatg cggagagatt gacactccag atcatacctt cttctcttgt aaattgaaac      5700
     ttaatcttaa ggaaaatcta gaatcggaaa tgaaacagcc aattaatgca aaaaatttat      5760
     taagattaat gttagaaagt aagcataatt ggtacttagg ttacaaatat ataaaagtaa      5820
     tattagatga taagatcaat aaatttaagc ctagtagcaa taagacaaac aactccgctc      5880
     caacagccaa cacccccgac gtaatgcctc caggcggtcc cggggcttta ttaagttagt      5940
     aatagttcag ttaagttaat tacaatttaa atttagatca attaaatttt gtcaactatg      6000
     tatttaaaac ttaataaaga aatttaaaaa aaaaaaaaaa aaaaaaa                    6047
//
ID   R1-7_DK     repbase;    DNA;    INV; 3350 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 17.07, Created)
DT   19-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3350
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1363-1363 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           32..1231
FT                 /product="R1-7_DK_1p"
FT                 /translation="MIAMKKLQLDISASLAGGHTKGSTACASQQTTPTLSG
FT                 TAPSATPASSRGTTAWQQIKHKPKPKVPHAMAKSRAQKEEQAPRTMKPRKQ
FT                 RSDAILIKCSEGSYADMLRIVKTEPSLQGLKEGVQGLRRTANGGLLVRMQK
FT                 SLDPSTQQLQAALKTAISGKAEVTVMQETVQVEIRDLDDLTSGEEVTMALF
FT                 AGEDCDIPSDAAPRMRKAFGGTQIATVSLRPGSTRGDCSSLHTDEFREIVQ
FT                 EIAQDARGRSPVIIAGDFNAWSTAWGSTRTTQRGTIILDAFSTLDVCLLND
FT                 GRRCTFSKSGRESYIDLTFASPELTRNSYWEVTHLLTYSDHAAIVFQTRXN
FT                 QLTPNQPGNCLQGTHPKLRGAPELHGCQHHYRRGKHLRGRHIRQDQGSPRR
FT                 GNGEIH"
FT   CDS           join(32..1231,1235..3202)
FT                 /product="R1-7_DK_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIAMKKLQLDISASLAGGHTKGSTACASQQTTPTLSG
FT                 TAPSATPASSRGTTAWQQIKHKPKPKVPHAMAKSRAQKEEQAPRTMKPRKQ
FT                 RSDAILIKCSEGSYADMLRIVKTEPSLQGLKEGVQGLRRTANGGLLVRMQK
FT                 SLDPSTQQLQAALKTAISGKAEVTVMQETVQVEIRDLDDLTSGEEVTMALF
FT                 AGEDCDIPSDAAPRMRKAFGGTQIATVSLRPGSTRGDCSSLHTDEFREIVQ
FT                 EIAQDARGRSPVIIAGDFNAWSTAWGSTRTTQRGTIILDAFSTLDVCLLND
FT                 GRRCTFSKSGRESYIDLTFASPELTRNSYWEVTHLLTYSDHAAIVFQTRXN
FT                 QLTPNQPGNCLQGTHPKLRGAPELHGCQHHYRRGKHLRGRHIRQDQGSPRR
FT                 GNGEIHGRRKATSPLVEPGNSLSQKQMSRCKAEMPKKPRTHHAGAVRVTIV
FT                 DTLFPPQPPLRLPSVAAGEPIPTCEEEVLSALTSCQASKAPGPDGIPNAAL
FT                 HAIVKAYPKLFVQLYNICIAEQTFPRAWKQQRLVLIPKPGKLNDDPSSFRP
FT                 LCMLNTIGKIFERIIGNKLEREIEERGALSTHQHGFRKKRSTIDAIREVTQ
FT                 LAENAIKGERWRGGSKKYCLVCTLDVKNAFNSANWSLILQALQRGGISGYI
FT                 IQLIADYFKDRVLLYSSDAGNQRHHVTGGVPQGSVLGPLLWNVMYDDILRL
FT                 SLPEGCSVIGFADDIALVTVEKHLSDVSTKCSHAIDILMSWLADNGLSLAE
FT                 QKTEAVLISSRKVVEKVNFRVGSTTIESSPTVKYLGVLIDHRLNYKCHLEY
FT                 AAAKASKATAAISRMMANTRGPRQHSRRLISTVVTSTLLYAAPIWAEAMLV
FT                 ASYSRQCRTVYRRCALRISSCFCTVSEEAALVVAGSIPIDLLAAERRTGNS
FT                 GSRTQRSITVARWQARWDNASTGRWTHRLIPDLDQWIHRRHGQVDFYTTQL
FT                 ITGHGCFKAYLHRFKHEADPSCDYCGGASVEDAEHAFFECPLFRAEREAAE
FT                 ATTNRRLTPETIIGCMLETPSNWDAVTDMAATVMRELRRREQTRRTEGLR"
XX
SQ   Sequence 3350 BP; 865 A; 972 C; 924 G; 588 T; 1 other;
     ccgccacgtt acgcagggga cgatcgacgc gatgatcgcc atgaagaagc tgcagcttga        60
     catcagcgcg tcattggccg gcggccatac caagggctcc acggcttgcg caagccagca       120
     gaccaccccc acgctgtctg gcacggcccc tagtgctaca cccgcgagca gccgtggaac       180
     tacggcgtgg cagcagatca agcacaaacc aaagcccaaa gtcccccacg ccatggcgaa       240
     gagcagagcc caaaaagagg agcaggcccc tcgcaccatg aagcccagga agcagcgctc       300
     cgatgctatc ctgattaagt gcagcgaagg atcctatgca gacatgctga ggattgttaa       360
     gacggagccc tcactccaag gactcaagga aggcgtgcaa ggcctgcgaa ggactgccaa       420
     tggcggactc cttgtacgga tgcagaagtc cctcgaccca tccacacagc agctgcaagc       480
     ggccctcaaa acggccatct ccggcaaggc ggaggtgacc gtcatgcagg agacggtcca       540
     ggtggagatc cgtgatcttg atgacttgac cagcggggag gaggtcacaa tggcactatt       600
     tgcgggagag gactgcgaca tcccaagcga cgctgcgccc agaatgcgga aagcgtttgg       660
     aggaacgcaa attgcgacgg taagcctgag acccgggagc acgcgcggag actgctcgag       720
     cttgcacaca gacgagttca gggagatagt gcaggagatc gctcaagatg ctcgcggacg       780
     gtcaccggtg ataatcgctg gagactttaa tgcatggtcc acagcctggg ggagtacgag       840
     aacgacccag cggggaacta tcatccttga cgccttttcc accctggatg tctgcctact       900
     aaatgatgga agaagatgca catttagcaa gtcaggccgt gagtcataca ttgacctgac       960
     cttcgccagt ccggagctca ccaggaacag ctactgggaa gtcacccacc tgctcaccta      1020
     tagcgatcac gcggcaatcg tcttccaaac gagacamaat cagcttacac caaaccagcc      1080
     gggaaactgc ctacagggta cacaccctaa actccgaggt gctcctgagc tgcatggatg      1140
     ccaacaccat tacaggcgag gcaaacacct gcgcggacgt catatccgcc aggatcaagg      1200
     cagcccgcga cgcggcaatg gagaaatcca ctaagggagg cggaaggcga ccagtcccct      1260
     ggtggaacca ggaaatagcc tcagccagaa gcaaatgtct cgctgcaagg cggagatgcc      1320
     aaagaagccg aggacgcacc acgcaggagc tgtacgagtc acaatagttg acacgctgtt      1380
     cccgccacag ccgccactaa gactacccag cgtggctgcg ggcgaaccga tccccacctg      1440
     cgaagaggaa gtccttagcg cgctgacaag ctgccaagca tctaaggccc ccggaccaga      1500
     tggcattccc aatgcagctc tgcatgccat agtgaaggcc tacccgaagc tatttgtgca      1560
     gctgtataac atatgcattg ctgagcaaac ctttccaaga gcttggaagc agcagagact      1620
     cgtgctcatc ccgaagcctg gcaagctgaa cgacgacccg tcctcatttc ggcccctatg      1680
     catgctgaat acgattggca aaatattcga gcgcatcata ggcaataaac tagagaggga      1740
     aatcgaggag cgcggtgccc tatcaaccca tcagcacggt ttccgcaaga agcgaagcac      1800
     tattgatgcg atccgcgagg taacacagct tgcggaaaat gccattaaag gcgaaagatg      1860
     gcggggaggc tccaagaagt actgcctcgt atgcaccttg gacgtcaaaa acgcgttcaa      1920
     ctctgcaaac tggagtctaa tcctccaagc actccagcgt ggcggcatat ctggctatat      1980
     tatccagctg attgccgatt acttcaagga ccgcgtcctg ctgtacagct ccgacgccgg      2040
     aaaccagaga catcacgtga caggaggcgt accccaaggc tcagtcctcg ggccacttct      2100
     gtggaacgtc atgtacgacg atatactgag gctgtcacta cctgaaggtt gctctgtaat      2160
     tggctttgca gacgacatcg cacttgtcac ggtggagaaa cacctatcag acgtctctac      2220
     taaatgtagc catgcgatag acattctgat gtcgtggcta gcagacaacg gtctctccct      2280
     tgccgagcag aaaacggagg ccgtacttat cagtagccga aaggttgtcg agaaggtgaa      2340
     cttccgggtc ggctcgacca ccatcgagtc cagcccgacg gttaaatacc ttggggtcct      2400
     gatcgaccac aggctcaact acaagtgtca cctggagtac gcagcggcca aggcgtccaa      2460
     ggccactgcc gccatctcga ggatgatggc caacacgcgc ggtcctaggc agcacagtag      2520
     acggctgata tcaacagttg tgacgtcaac cctactctac gccgcaccga tatgggcgga      2580
     ggccatgctg gttgcgagct acagccgcca atgcaggacg gtgtatcgac gctgcgcgct      2640
     gcgcatttcc agctgcttct gcacggtctc tgaagaagct gcgctggtgg tagccggatc      2700
     gatccctatc gacctgctgg cagcggaacg caggaccggt aactcgggca gcagaaccca      2760
     gaggagcatc actgtcgcaa ggtggcaggc gaggtgggat aacgcgagca ctggacgctg      2820
     gacacatcgg cttatccccg atctggatca gtggatacac agacgtcacg ggcaagtaga      2880
     cttctacaca acgcagctga tcacgggcca cggatgcttc aaggcctatc ttcacagatt      2940
     caagcacgag gccgacccat cctgcgacta ttgcggcggt gcatccgttg aggatgcaga      3000
     acacgccttc ttcgagtgtc cgcttttccg cgcggaaaga gaggcagcag aggcaacaac      3060
     caaccgtcgc cttacacccg agaccataat tgggtgtatg ctggagaccc catccaactg      3120
     ggatgcggtt acggacatgg cagcaaccgt catgagggag ctaaggcgcc gggagcagac      3180
     ccgacgcact gagggcctta gatgagcggc aacctgaccg ccagccaccc cgcgaagtat      3240
     agcttcgcgg cagtcccgcg ggagtggact ccttctccaa acttccacta tcctaatttt      3300
     ttgtaaaatt acttcctttt catctttaaa taaaaaaata aaaaaaaaaa                 3350
//
ID   R1-7_DPer   repbase;    DNA;    INV; 5139 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.08, Created)
DT   10-JUN-2011 (Rel. 17.08, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_DPer.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5139
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(8), 1673-1673 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           502..1983
FT                 /product="R1-7_DPer_1p"
FT                 /translation="MEEEEKLAFRKGSMLARSPAPEPSPSPAAAAQSRDLD
FT                 SRETPKRVRDPASPGSSQRQTPPKKSKAHQEATCLENLSELGKILDEVQTR
FT                 MMDKNTRHINMATRALFVRMKELHSNIIXSSQEAAAGRSAPQEGSDAQGLC
FT                 PKCSQSTRSADKEQQTTTVWRKDAAAQTEPWRRLSQPSVAEGPLGEPGTPP
FT                 TRPRQRKGAIATKRTLKKAPLRPHGDVATTSAMRQPKSPGIPDSEWSVVAK
FT                 RPRAARRARPDAVIVQASGKSYSEVLAMVTRRHDNQLSDLGSCVSKVRRTI
FT                 NGNLLLEVAKDSVESAEGMKASIARVLGDGASVRAMTEDSKVVILEIRDID
FT                 SLATEQEICAALTRQFNIDEGRVRVRSLRRGYAESQLAVVSLPFSLGQAVL
FT                 KGGKVRIGWTICRIRERDGLPRCYRCLEPGHIARNCKSTVDRSGCCIKCGE
FT                 KGHKVAECKKEPACFICSAAGKKEVTHQAGTKNCPATRSGVGKTRTTCS"
FT   CDS           1977..4970
FT                 /product="R1-7_DPer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQLIQLNLNHCRAAQDLLTQTVRELGSEVALLSEPHK
FT                 VGSSSDWATDLTGKAALWLCGVDAPQLRDTKSADGFVRGYVGGIWFYSCYL
FT                 APSLSLETFSRIMDELSCDLRGRNNVVVGGDFNAWALEWGSSRTNARGRTV
FT                 LEAFASLDVVLLNEGSQHTFSRAGVGSIIDLTYASSTLARHARWRISDVYT
FT                 ASDHEAILCTLGTLARSRGTPFRHGKAYRQDTLRAQAFASALESYSANDAD
FT                 GANDMATKLADALEGACDQSMLPRGTFRKHKDPVFWWSEAIAVLRRTCHRA
FT                 RRLLQRARGTPRLARCSETYKAARKDLKTAIRNSKRECFLKLCDAAEEDPW
FT                 GGAYRMVVKRLNAGSKAPTDPEALEGIVSVLFPRGRQIPSSLRFEHSPSDI
FT                 CEVTEAEVLQAGRNLIPRKAPGPDAIPNSALKLALLLLPREVAGLFNKCLQ
FT                 EGTFPERWKRQRLLLLTKPGKPPGVASSYRPICLLDSMGKVFERVIGARLS
FT                 AAIEAAGGLSQNQYGFRKGRSTLDAILRVVQTAEEAIAGTRWRGGTKSYCL
FT                 VVTLDIRNAFNSADWTRTLEALRSFNIPGYLLNIARSYFSNRVLTMDTCQG
FT                 SRAYEVSAGVPQGSVLGPLLWNAMYDGVLRLPMPANTNLVGFADDVAIVAV
FT                 AKELAAVEELANVAIQAVEAWLAAAGLELAAQKTEAVLISSRKVVETARVQ
FT                 VGGTAIQSQRSIKYLGVLIDTRLSFKEHLEYVHTKAGGTAGALSRMLLNTR
FT                 GPKQATRKLLTSVVTSQMLYAAPVWAEAAKVRSYMRGVEATYRLCAIRIAC
FT                 SFRTISDEAALVIAGQVPLRELIRERKEIHDAMTDSAAEARSKAEIKDAAR
FT                 RTSIDRWQTRWDHSPKGRWTHTLIPSIACWVERKHGQVDFYLTQALSGHGC
FT                 FRGYLKRFGHETEDWCPECGTGIEEDARHVLFDCHRFDLERQTLETAAGSR
FT                 VSTETLVPLMLADPKVWEAAAEFASSVMRTLRSLERRRKEQTE"
XX
SQ   Sequence 5139 BP; 1245 A; 1433 C; 1599 G; 856 T; 6 other;
     gttgagcgtt ttcaagtgcg gttgtttcga atcacgggct cctgattttc cgttttcagc        60
     atccgcgctg cgcgtgttac ctggaagaaa agctkttgag agcaggttgc tgtcgcgccg       120
     gtacgtactg cgtataaaaa ccggccccac cggcatcccg ctctgttgca ggggcacaat       180
     cagtgcgctc cakscagcag gggaaggggg ggtgaaccct tgttttggcg ccttccactt       240
     ccactttcca cattgttggt ggaggggaaa aaaggaattc tcactcaact tttcttcttt       300
     cttcttcttc tcgtccggag cttcacacac agcagctgat cgcgccgcca gacaggtgat       360
     cgcgtagagt tgccacacgg acggtgttgc cagacagccc cgatcgaccc agggctgcca       420
     gagtgttgga gagagctgga kttgcgcgcc aacggaggga gatttcaaat tcgaaattca       480
     aatactaaag taatcaacgg aatggaggag gaggaaaagc tcgccttcag gaagggtagc       540
     atgctcgccc gatcgccggc acccgagcca tctccatctc cagcagcagc ggcgcagagt       600
     cgggaccttg actctaggga gacccccaag agggttcggg acccagccag cccgggaagt       660
     tcccagaggc aaacgccgcc caagaagagc aaggcccacc aggaggctac ctgccttgag       720
     aacctctcgg agctgggaaa aatccttgac gaggttcaga ccaggatgat ggacaaaaat       780
     acgcgccaca tcaacatggc caccagagca ctgttcgtgc gcatgaagga gctgcactcg       840
     aacatcatcs aatcgagcca agaggctgca gcgggtagaa gcgcgccgca ggaaggctcc       900
     gacgcccaag gcctgtgccc gaaatgctca cagagcacgc ggagcgcaga caaggagcag       960
     cagacaacga ccgtctggag gaaagatgcc gcagcgcaaa ccgaaccgtg gcgcagactt      1020
     agccagccat ccgtggccga aggtccattg ggggagccgg gaaccccacc tacgcgccca      1080
     aggcagcgaa aaggagctat cgcaaccaag aggaccctta aaaaggcccc gttgcggcca      1140
     cacggagacg tggcgacgac cagcgccatg aggcagccca agagccccgg aatcccggac      1200
     agcgaatgga gcgtggtggc caagaggccg agagcagcac gccgcgctcg cccagacgcg      1260
     gtcatagttc aggcctccgg gaagtcgtac agcgaggttc tggcaatggt caccagacga      1320
     cacgacaacc agctttccga cctgggaagc tgcgtctcca aggtacgccg caccataaac      1380
     ggcaaccttc tgctggaggt ggcaaaagac agcgtggaga gtgctgaggg catgaaggcc      1440
     agcatcgcac gtgtcctcgg cgatggagcg tctgtgcgcg caatgacgga agactcgaag      1500
     gtggtcatat tggagatacg ggacatcgac tccctcgcga cggagcagga gatctgtgcc      1560
     gctctaactc gccaattcaa cattgacgag ggtcgagtaa gagtccgcag tctgcgccgc      1620
     ggatacgcgg agtcccagct ggcggtggtc agcttgccct tctccctggg ccaagcggtc      1680
     ctgaaaggcg gcaaggtgag gatcggctgg accatatgta ggatccggga aagagatgga      1740
     ctcccaaggt gctaccgatg cctggaaccc gggcatatcg cacggaactg caagagtaca      1800
     gtggacagga gtggctgctg catcaaatgc ggtgagaaag ggcacaaagt tgccgaatgc      1860
     aaaaaagagc ctgcgtgctt catctgctca gcagctggaa agaaggaggt cacgcaccag      1920
     gcaggcacta aaaactgccc agccacgcga agcggggtcg gcaaaaccag gacgacatgc      1980
     agttgattca actcaacctg aatcactgca gggccgcaca ggatctcctg acgcagacgg      2040
     tgcgcgagct tggctctgag gtggcactcc tcagcgaacc acataaggtg ggcagcagca      2100
     gcgattgggc cacggacctt actggcaaag cggccctgtg gctctgtggc gtcgacgcgc      2160
     cacaattgcg cgacaccaag tcggcagacg ggttcgtccg agggtatgta ggcggcatat      2220
     ggttctacag ctgctacctg gcacccagcc tctcactgga gactttcagc cgcattatgg      2280
     acgagctgag ctgcgatctg cgaggacgga acaacgtcgt agtcggaggc gacttcaacg      2340
     cctgggccct ggaatggggg tcctcccgta caaacgccag aggccgcacg gtgttggagg      2400
     cttttgcctc tctggacgtc gtccttctga acgaagggtc ccaacacact ttcagcaggg      2460
     caggtgtagg gtcgatcatc gatctcacct atgccagcag cacgctggcc cggcacgccc      2520
     gatggaggat cagcgacgta tacactgcca gcgaccacga ggccatacta tgcaccctgg      2580
     gcacccttgc ccgatcgaga ggtaccccgt tccggcatgg gaaggcgtac cgccaggaca      2640
     cgctgagggc ccaagccttc gcaagcgccc ttgagagcta ctctgcaaac gatgcagacg      2700
     gagccaacga tatggcgacc aaattggcgg acgcacttga aggcgcctgc gaccagagca      2760
     tgctaccgag agggacgttc cggaagcaca aggatccagt tttctggtgg agcgaagcga      2820
     ttgcggttct ccgtagaacc tgccaccggg ccagaaggct gctccagcga gccagaggca      2880
     caccgcgctt ggcccgatgc agcgagacct acaaagcggc gaggaaggat ctgaagaccg      2940
     ccataaggaa cagcaagagg gaatgcttcc ttaagctgtg tgatgccgcc gaagaggacc      3000
     cctggggagg cgcgtacagg atggtggtga agaggctgaa cgcgggcagc aaagccccaa      3060
     cagatccaga ggcactggag ggaatagtca gcgtactgtt tcctcgagga cggcagatcc      3120
     ctagctccct gcggttcgag catagcccga gcgacatctg cgaggttacg gaagccgagg      3180
     tgttgcaggc aggcagaaac ctgataccta ggaaggctcc gggtccggat gcgatcccca      3240
     acagcgcgct gaagctggca cttcttctac tcccgaggga agttgcgggc cttttcaaca      3300
     aatgcctcca ggaggggacg ttccccgaga ggtggaaaag gcaacggctg ctactattaa      3360
     ccaagccggg caagccgcca ggggtggcct cttcctacag gcccatctgc cttctggact      3420
     ccatgggaaa ggtcttcgaa agggtgatcg gtgcgaggct gagcgcagcc atcgaagcag      3480
     caggcggtct ctcccagaac caatacgggt tcaggaaagg gaggtcgacg ctggacgcca      3540
     tcttgagggt cgtacaaacg gcggaggaag ccattgctgg gactaggtgg agaggcggaa      3600
     caaagtccta ttgtctggtg gtgacactgg acataaggaa cgccttcaac tcggccgact      3660
     ggacccggac gctggaggca ctgaggtcct tcaacatccc gggctaccta ctgaatatag      3720
     cgcgcagcta tttcagcaat agggtgctga caatggacac gtgtcagggc tctagggcat      3780
     acgaagtctc agccggagtc ccgcagggct ccgttttggg acctctgctc tggaacgcca      3840
     tgtacgacgg ggtcctacgg ctcccgatgc cagccaacac taacctggtg ggtttcgctg      3900
     acgacgtcgc aatagtggcg gtagcgaagg aacttgccgc agtggaggag cttgccaacg      3960
     tcgccataca agccgttgag gcgtggctag ccgccgcggg gctggagctg gcggcccaaa      4020
     aaacggaggc ggtcctgata tccagccgta aagtggtcga gaccgccaga gtgcaggttg      4080
     gtgggaccgc gatccaatcg cagaggtcca tcaagtacct aggagtcctc atcgacacgc      4140
     gcctgtcctt caaagagcat ctggaatacg tccacacgaa ggccggtggg accgcgggag      4200
     cgctatccag gatgctgcta aacaccagag ggccaaagca ggcaacgagg aaactgctga      4260
     cgagcgtcgt gacgtcgcag atgctctacg ccgcwccggt gtgggcagaa gccgcgaagg      4320
     tgaggagcta catgcgagga gtggaggcaa cgtacagact gtgcgccatt aggatcgcgt      4380
     gctcgttccg gaccatctca gacgaagccg cgttagtcat tgccgggcaa gttccgctca      4440
     gggagctgat aagggagagg aaggagatcc atgatgccat gacggacagt gcagccgagg      4500
     cacgctccaa agcagaaatt aaggacgccg ccagaaggac cagcatagac agatggcaga      4560
     ctcgatggga ccactcaccc aaaggccgat ggacccacac cctcatccca agcatagcat      4620
     gctgggttga aaggaagcac ggccaggtgg atttctacct tacccaggca ctgagcggac      4680
     atggctgctt ccgcggctac ctcaagcgct tcggccacga gacagaggac tggtgccccg      4740
     agtgtggcac aggcatagag gaggacgctc gccacgtcct cttcgactgc cacaggtttg      4800
     acctcgagcg tcagacattg gagacagcag cagggtctag ggtcagcacc gagactctgg      4860
     tgccgctgat gctggcagac ccgaaggtgt gggaagcggc cgcggagttc gcctctagcg      4920
     tgatgcgaac gcttaggtcc ttggagagaa ggcggaagga gcagacggag taggagtcca      4980
     cgccactgcg aagcaatgct ttgcggcagt accgcagtcc gcggggcccc tagtcccaac      5040
     agtactcttg tccgttaatt taagttaaat ataaattgta tagtatatat tatagagcaa      5100
     ataaataagt atatgaatat aaaaaaaaaa aaaaaaaaa                             5139
//
ID   R1-7_DTa    repbase;    DNA;    INV; 4837 BP.
XX
AC   .
XX
DT   27-AUG-2021 (Rel. 26.10, Created)
DT   27-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4837
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5921-5921 (2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(831..1811,1795..2199,2172..3794,3793..4077,
FT                 4081..4701)
FT                 /product="R1-7_DTa_1p"
FT                 /translation="KVPTHEAEGATVAPWSGAANRFAPKVSTPKGGRAPEA
FT                 TTATKPGSGGANGNSTPRGSPSWQQARPRSKKPQRRNPTAKPRSQRPDAIL
FT                 IKCSEGSYADMLRMVTSEPSLQGLKDKVQGIRRTASGGLLLRMQKPLDPST
FT                 QQLQATIQTAISGKAEVAVMQETVQVEILDLDEMTSGEEVLQVIYAEVESD
FT                 IPGEAAPRMRKAYGGTQTATVNPRPEHAQRILQKGKIRIGWVVCRIREKIE
FT                 PRRCYKCMGYEHTSARCRVSDGVAKSTQEACYKCGETGHKHIKCTRSIPKC
FT                 ILCSRGGESGREVEHSTLSRMCPEYRKALKKLQHVRNCSMFKFLQLNLNHC
FT                 RAAQDLLSQTVIDQRVDIAIISEPYKANPEGVWQQSTDTGAAIWSCGQHAG
FT                 HMSQRASKPGYARAKILGVTLYSCYIAPSVHVDDFRNIVHEIAQDARGRSP
FT                 VLIAGDFNAWSTAWGSVRVVNCMGQRLNDAMAPLDVCLLNDGNRCTISKAG
FT                 RESIIDLTFASPELARNCAWRVTDLYTHSDHAAIITETANSSPAPTSRQTL
FT                 YRVNTLNVDVLLSRMDDTSSDGDANTCAETVAARVKSACDAAMETASRGGN
FT                 ARRPVPWWNEEIAKARRECLSARRKCQRCRGRPTQEASEIHYRAMKKALKD
FT                 TIKASKARCFQELCDAADSEPFGSAYRMVMGKLNRRPTPTCPAQLATIVST
FT                 LFPAQTPLVPPHVYTGRTVLTSEAEVLGALATMKKNKAPGPDGIPNAALHA
FT                 IVASHTNLFVQMYNKCLCERVFPTSWKRQRLVLIPKPGKQNEDPSSYRPLC
FT                 MLNTIGKIFIRIICNKLEKELEERNALSDHQHGFRKKHSTVDAIREVTQLA
FT                 ANAIEGERWRGGTKKYCLICTLDVKNAFNSANWELVLRALQRKGISDYLTQ
FT                 VIADYFRDRVLSYSSDAGVHEHQVTGGVPQGSVLGPILWNVMYDGILRLTL
FT                 PDGCTVVGFADDIALVTVAKKLDDLADVCSRSIDMLMRWLASNGLTLAHKT
FT                 EAVLISSRKVVEKVRFRAGAATIESIPAIKYLGVMIDHRLTYKHHLEYIAD
FT                 KASRATSAISRMMANTRGPKQHSRRLIATVVTSTILYAAPIADAAKCQTYI
FT                 RQCKAVYRRCALRISSCFCTVSEEAALVVAGTIPIDLLAAERRTGVSGDRI
FT                 QRARTVELWQERWDTARTGRWTHKLIPNIAPWLNRRHGQVDFYTAQMITGH
FT                 GCFKEYLWRFKHERDPYCDICGNTTSEDAEHALFVCPLYERDRVVAEAATN
FT                 CPITADNAIECMLDSATKWDAVAHMAAVIIRDLRRREQRRSGSR"
XX
SQ   Sequence 4837 BP; 1321 A; 1318 C; 1330 G; 868 T; 0 other;
     acaggttgtc gctgagataa agtgcgggac tagttctcac gcatacggtc gacagcgaac        60
     ggtcgttttt ccccgcgctc tgtaaactta cccaaataaa gctgggaaag tggtaatagt       120
     tttcctgaaa atgcaaatct ttgtcataac gagacacttg gggtcatagg tacgtaccaa       180
     gatctgcgcc tgcttaactc cttgtgcatc ctcaaaatat tggtcacttg cgaacccggg       240
     gatctagcct gtcggctagg ggggaagccc ctcccgcgcc cgccgagtcc cgcaactttc       300
     tctacaaacg cctcctccct caaagtttcc accagtcgct ttttattctc ccgcgttttc       360
     ctggtaaaca aacgccagct gataaacagg gttggaaagc gccgaggtta acagcgagct       420
     tacagcgccg cgcgtaacag cacactgctg gttaacagca gcaccctgcc taacagtggc       480
     gctaaaattg cgctgttaaa agatttcaaa actagaattt cctttaaaca gcctaggcaa       540
     tcgcatcccc cctcttactt cctaccctac tcctggggag aaaattagct aaaggccaag       600
     gtactggcta attcccaacc cccccgccgt ggcggcgcct cactaaacgg ggcactgggg       660
     accgagctgg agcggtatac ctcccatcgg tgccaatact gggggaaatc ccagtacgtc       720
     gagggactcc caatggagca ggcagcgaag accgggagga aagagcctgc tggcctggat       780
     gacgggaccc aagcactggc tgtagccagg gccgaagagg agcttattaa aaagttccaa       840
     ctcatgaagc agaaggtgca acggtcgccc cctggtccgg cgccgccaac cgattcgcac       900
     ccaaagtcag cacccccaaa ggtggacggg cacctgaagc aaccaccgcc acgaagcctg       960
     gaagtggtgg agccaacggc aatagcacgc cccgaggaag ccccagctgg caacaggcta      1020
     gacctagaag caagaagccc caacgcagga accccaccgc gaagcccaga agccagcgac      1080
     cagacgccat tctaattaaa tgcagcgaag gatcctacgc agacatgctg aggatggtca      1140
     cgtcggagcc atccctacag ggcctcaagg ataaggtgca aggcatcaga aggacagcga      1200
     gtggagggct actactcagg atgcagaagc cgctggatcc gtccacgcag cagttgcagg      1260
     ctaccatcca aactgccatt tccggcaaag ccgaggtggc tgtcatgcag gagacggtac      1320
     aagtggagat cctcgacttg gacgagatga ccagcggcga ggaggtcctg caagtcatat      1380
     acgcagaagt tgaaagcgac attcctggcg aagctgctcc acgaatgcga aaggcctatg      1440
     gtggaacgca aaccgcgacg gtcaacccta gaccagaaca tgcgcaaagg atcctgcaaa      1500
     agggcaaaat caggattgga tgggtggtct gccggataag ggagaagatc gagccaaggc      1560
     gatgctataa atgtatggga tacgagcaca cctccgccag atgccgagtc tcggatggag      1620
     tcgccaaatc cacgcaggaa gcgtgctaca aatgtgggga aacaggccac aaacacatca      1680
     agtgcacccg aagcattcca aaatgcatcc tttgctccag aggaggcgaa tcagggagag      1740
     aggtcgaaca ctcgacgctg agcaggatgt gcccagagta tcggaaggcc ttgaagaaac      1800
     tgcagcatgt ttaagttcct ccagcttaac ttgaaccact gcagagcagc acaagacctg      1860
     ctctcgcaga cggtgatcga ccagcgagtc gatattgcga taattagcga gccgtacaag      1920
     gcaaatccag aaggtgtctg gcaacagagc acggatacag gcgcagccat atggagctgt      1980
     gggcagcacg cgggacacat gtcacaaagg gcatctaagc ctggctacgc tagggcgaaa      2040
     atcctggggg taaccttata cagttgctac atagccccga gcgtacatgt agacgacttc      2100
     aggaacatag tgcacgaaat cgcccaggac gcgcgcggaa gatctcctgt tctaattgca      2160
     ggcgacttta acgcgtggtc aactgcatgg ggcagcgttt aaacgacgcc atggctccgc      2220
     tggatgtctg cctacttaac gatgggaaca ggtgcaccat tagcaaggct ggtcgggagt      2280
     caatcataga cctgaccttc gctagccccg agctggccag aaactgcgcc tggagagtca      2340
     cggacctgta cacccatagc gaccatgcag cgatcatcac ggagacggcg aatagctccc      2400
     ccgctccaac tagccggcaa acactctaca gagttaacac cctgaacgtc gatgtgctcc      2460
     tatcacgcat ggacgacacc agctcagatg gcgacgcaaa tacctgcgcc gagacggtag      2520
     cggccagggt caaatctgcg tgcgatgcag cgatggaaac ggcctcaaga ggtggaaatg      2580
     caaggcgacc ggtcccatgg tggaacgagg agatagccaa agccaggaga gagtgcttgt      2640
     ctgcaaggcg caaatgccag agatgcagag gtcgccctac acaggaagca agcgaaatac      2700
     actatagagc gatgaagaag gcactgaagg ataccataaa agctagcaaa gccaggtgct      2760
     tccaggaact gtgcgatgcg gcagactctg aaccttttgg atctgcttac aggatggtca      2820
     tgggaaagct aaacaggagg ccgaccccaa cttgtccggc acagctagcc acaatcgtgt      2880
     ctaccctgtt tcccgctcag actccactcg taccacctca cgtgtacaca ggaagaacgg      2940
     tgctaactag cgaagcggaa gtcctgggcg ccctggccac catgaagaaa aacaaagccc      3000
     ctggtccaga tggaatcccc aacgccgcac tgcatgccat tgtcgcatcc cacacgaatc      3060
     tcttcgtaca gatgtacaat aagtgcctct gcgaacgcgt tttccccacg agctggaagc      3120
     ggcaaagact cgtgcttatc ccgaaaccgg ggaagcagaa cgaggaccca tcttcataca      3180
     gacccctatg tatgctgaat acaataggca aaatcttcat acgcatcata tgcaacaaac      3240
     tggagaagga gctcgaagaa cgcaacgctc tgtccgacca ccagcacggc ttccggaaga      3300
     agcatagtac tgtcgacgct attcgagagg tgactcaact ggctgcgaac gccattgaag      3360
     gagaaaggtg gcggggtggc acaaaaaagt actgcctgat ctgcaccctg gacgtaaaaa      3420
     acgcctttaa ttcggccaac tgggaacttg tgctccgcgc gcttcagcgc aaagggattt      3480
     cggactacct gacgcaggtg atagccgact atttccggga ccgcgtacta agttacagct      3540
     ccgatgctgg agtacacgaa caccaggtga ccggaggcgt accccaaggc tcggtactgg      3600
     gacccatcct atggaacgtc atgtatgacg ggatcctcag gctgacgtta ccagatggct      3660
     gcacggtagt gggatttgct gacgacatag cgttggtcac ggtggccaag aagctggacg      3720
     acctagcgga cgtttgcagc cggtcaatcg atatgctgat gaggtggcta gctagcaacg      3780
     ggcttacact agcataagac cgaggcggtg ctcataagca gcagaaaagt cgtcgagaag      3840
     gtacggttcc gagccggcgc agcaacaatc gagtccatcc cagcgatcaa gtacctcggg      3900
     gtcatgatcg accacaggct gacatacaag catcacttgg aatatatagc agataaagcg      3960
     tccagggcga catcagccat ctcaaggatg atggccaaca cgagaggacc aaagcagcac      4020
     agccggcgcc ttatagccac agtggtaacc tcgacgatat tgtacgccgc gcctatctag      4080
     gccgatgcag cgaagtgcca aacatatatc aggcaatgca aggcagtcta tcgacgatgc      4140
     gcactgcgga tctcaagctg cttctgcaca gtgtccgagg aagccgccct agtggtagcg      4200
     ggaacaattc cgatagacct tctagcggca gaacgaagga ctggagtctc gggtgacagg      4260
     atccagcggg ccaggactgt cgaactttgg caggagagat gggacaccgc gagaaccgga      4320
     cgatggacgc acaagctgat ccctaatata gctccctggc taaacaggag gcatgggcag      4380
     gtggattttt acacggcaca gatgataacg gggcacggtt gcttcaagga gtacctgtgg      4440
     cggtttaagc acgaacgaga cccatattgc gacatttgcg gcaacaccac cagcgaggac      4500
     gcggagcatg ctctctttgt atgccccctc tatgaaagag atcgagtagt tgcggaagcg      4560
     gctacgaatt gtccgataac ggcggacaat gctattgagt gcatgctgga cagcgcaacc      4620
     aaatgggacg ctgttgccca tatggcagca gtcattatta gggacctgag gcgtcgagaa      4680
     caacgacgct ccggatccag atgaggagcg gaaccctgac cgccttccgc cccgcgaagt      4740
     aaagctttgc ggcagttccg cgggagcggc accctccttt cctcttacct ttatgtatat      4800
     atttaagttt ctttcaaata aaaaaaaaaa aaaaaaa                               4837
//
ID   R1-7_DWi    repbase;    DNA;    INV; 4677 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4677
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1968-1968 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
CC   This family shows no target site specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           625..1539
FT                 /product="R1-7_DWi_1p"
FT                 /translation="DAPPESSRPAANTSETVSPKNRRPRETFSSHDNEGIV
FT                 PQTEPAWQTVTARRPTRTLPKKRPAAILVQRKSGMXYSDMLKLVTRSQDTK
FT                 LQAVGESVRSVRRTAKGDLLLELNAAGAENVTQLKEDIGSALEGQVEARAL
FT                 SNLTRLEILDMDGGTTKEEIVQAVSDQLSLKIVPADVKSLRPAHGGNQRAT
FT                 ICVPGAVAEAILKAAHLKIGYSVCRVRVSTSASRCYRCLEFGHMAAACNSP
FT                 VDRTNWCIRCGGKDHKAKECRNGFNCCICESRGITERKHVAGSQRCPSITQ
FT                 AGPMKSSRPRRNV"
FT   CDS           1535..4534
FT                 /product="R1-7_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSFTQLNLNHCEAAHELLKQRVRETKSDAAVISEPF
FT                 RRKTSPNWAYSTSGKAAIWACGNPPSQLLSRLAGEHFIRAQVKGIWLYSCY
FT                 LPPSLCLTDFCKALDELXTDVRTHSPTIIAGDFNAWAQEWGSSSTNARGRA
FT                 LLDAFASLDVELLNHGTQNTFNRAGRGSVIDLTYVSSGLARXSAWKLDNCY
FT                 TASDHEAICVTIGRETDRRQHAAHPLPIDMPFKEDTLDPQAFSSMLTRQSL
FT                 TATTAQEMANEACSMLAAASTASMAQSRPFRSHHKPVFWWNGEIADLRRSC
FT                 MAARRKYQRARKRMDSDWTHHHAHYSSARRSLKKAILSAKREVYLQLCDSA
FT                 EHDPWGRAYKIVVKRIHANRQLVPSDAEEVSQIIDGLFPNRPVSPSIAQHP
FT                 VPASHTIDAISSDEVLAAAKSLQLGKAPGPDRIPNRAVKLALTLRPDVFAA
FT                 VFNRCLTEGVFPEQWKTQKLALLPKPGKPTDTSPSYRPICLVDSIGKVFEG
FT                 LIGTRLNAYVSECGGLSANQFGFRKARSTIDAVSKVVGIASSAIEGTRWKG
FT                 GSKRYCLVVTLDVKNAFNTADWSCIISAIHELGVPPYLLAIIRSFFRQRIL
FT                 RYGTSDGPKSRNVSAGVPQGSVLGPLLWNLMYDGVLRLPLPPGCEAIGYAD
FT                 DVAIVVVAKELEKAESVASQAIASITRWLQSVGLALAAEKTEAVLISSRKT
FT                 VEHASVQVEGSTITSKRAIRYLGVWLDTRLCFREHLENVQRRAASTGQALS
FT                 RLMLNTRGPKQERRLLLMSVLKSVILYAAQIWANAIHTTAYSRGITATYRL
FT                 CALRVCSGFRTVSEDAALVVAGMIPINLLADEARNIADAKRNGTPKRTASG
FT                 DARMQSLAIWQERWDSSSKGRWTHTLIPTIRPWIERKHGQATFHLTQFTTG
FT                 HGCFRSYLHRFGHEAEPYCLTCGEGMVEDAEHALFACRRFTSQRRLLEETV
FT                 GTVLTTENLVPTMLADAAAWEAVSSFTGFVGISLRKAERERNGHT"
XX
SQ   Sequence 4677 BP; 1228 A; 1260 C; 1325 G; 850 T; 14 other;
     ctcggaccga catttgaatt gtgtggagcc gagcagggag cggcataact cccaaaaaac        60
     cccaggggga aatacctggc ttcaagcatk gagggcttga gatcggctgc cttgatggcg       120
     gggccaagtg ggcggcgtca gtcaatggcg ctcgcctcag caccggctct atggtctgag       180
     tctgtttgcg ccgacagtcc atgcagtcag cttgcgatag aggctctgtt cggtcatgag       240
     cgagcagtag gagtaaatga gttgtttggc gtgaccgata cgccaaagag gctgcgtgaa       300
     gtttccaaga gtcctccagc aggcggcgcg atgcaascaa agaaatctaa gttgcaacaa       360
     scwaggggca agagcgagtt ggcagaaatg ggwgcgttac tggaggaaat agccgaacgc       420
     atcaagccag aaaaggaggg aggcaagcga gccattacga atgctctcag agagaaagtm       480
     gamagactca aggaattgca gcakgcagtg agtacattct ggcagcgata gcgaccccga       540
     aacagtagcg gcatgcccca agtgcaccaa agtgtccctc gtcacmagag ggcaacaaac       600
     ggagaagccg caacagcagc ctaggatgcc ccgccagaga gcagtcgccc cgccgccaac       660
     acttcggaaa ccgtttcgcc gaaaaatcga cggccgcgag aaactttttc gtcgcacgac       720
     aacgagggga tcgtgccaca aacagagcct gcatggcaga cagtgacggc gaggcgaccg       780
     acwcggaccc taccaaagaa gcgtcctgcc gctattttgg tacagcggaa gagtgggatg       840
     wcgtatagcg acatgctaaa gctggtgaca aggagccagg acacsaagct gcaggcagtg       900
     ggcgaaagcg tgcgctccgt gagacgtacc gccaaaggag acctcctact ggaactaaac       960
     gcagcaggag cagagaatgt cacccagctg aaggaggaca taggatccgc gcttgaaggt      1020
     caagtcgagg caagggcact atcgaatctg accagattgg agattctgga catggatggc      1080
     ggaaccacca aggaggaaat cgttcaggcc gtctccgacc agctgagtct gaaaattgtt      1140
     cccgcagatg ttaagagtct gcgcccagcg cacggaggaa atcagagggc aacaatctgt      1200
     gtcccaggag cggtagcaga agcaatcctg aaagcagccc acctgaagat tggatactcg      1260
     gtatgcaggg tacgcgtaag cacttcggcg tctagatgct acaggtgcct ggagtttgga      1320
     cacatggcgg cagcgtgcaa cagccccgtc gacaggacaa actggtgcat aagatgcggc      1380
     ggcaaggacc acaaagcgaa ggaatgcaga aacggtttca actgctgtat atgcgagtca      1440
     agagggatca ccgagcgaaa acacgtagca ggcagccagc ggtgcccctc aataacgcag      1500
     gctgggccca tgaagtcgtc tcgaccaaga cggaatgttt agctttaccc agctaaactt      1560
     aaaccactgc gaggccgccc atgagctgct taagcagcgg gtgcgagaga ccaaatctga      1620
     cgcggcagta atcagcgaac cattccgcag gaaaacctca cccaattggg cgtatagcac      1680
     gtcgggcaag gccgccatct gggcatgtgg caacccgccc tcgcagctcc tttccaggct      1740
     agctggcgag cacttcatca gggcacaggt caaagggata tggctgtaca gttgctactt      1800
     gccgcccagt ctgtgcctta cggacttctg caaggcgcta gatgaactgw cgaccgacgt      1860
     aaggacacac agccccacca taatcgcggg agacttcaac gcatgggcac aggaatgggg      1920
     aagctcctcc acaaacgcgc gaggccgcgc cctgctcgac gcttttgcct ccctagacgt      1980
     cgaactattg aaccatggca cccaaaacac gttcaatcgg gctggaaggg gatcagtgat      2040
     agatcttacg tacgtaagca gtggccttgc gaggwcatca gcctggaaac tggataattg      2100
     ttacacggcg agcgaccatg aggcgatctg tgttactata ggccgtgaaa cggacagacg      2160
     acagcacgca gcgcaccccc tccctatcga catgcccttc aaagaagaca cgctggaccc      2220
     ccaggcgttc tcttcaatgc tgacccggca aagtctcaca gcaaccacgg cacaagaaat      2280
     ggcgaacgaa gcctgcagta tgttggctgc tgccagcacg gcaagtatgg cccaatccag      2340
     accattcaga agccaccaca aaccggtatt ctggtggaac ggagaaattg cagatttgag      2400
     gagatcctgt atggctgcaa gaaggaaata ccaacgagca aggaagcgca tggactcgga      2460
     ctggacacac caccacgccc attacagctc ggctagaagg tccctcaaga aggccatcct      2520
     ttccgcgaaa agggaagttt atttgcagct gtgtgactcc gcagaacacg acccatgggg      2580
     aagagcatac aaaatagtgg tcaagcggat acatgcaaac cgccagctcg tcccatctga      2640
     cgctgaagaa gtctcacaaa ttatcgacgg cctattcccc aaccgcccgg tttccccaag      2700
     catagctcag catccagttc cagcatcaca caccattgat gcgatctcgt cggatgaagt      2760
     cctggcggcg gccaagtcgc tccaactcgg caaagcaccc ggtccagatc ggatcccaaa      2820
     ccgcgccgtt aaactggccc tgactctacg accagatgtc ttcgcagccg tcttcaaccg      2880
     ctgcctcacc gagggagtct tccccgagca atggaagacc cagaagttgg ccctcctgcc      2940
     aaagccgggg aagccaacag atacctcccc ctcctataga ccgatatgcc tggtggactc      3000
     tataggcaag gtgtttgaag gcctcatcgg aacgagactg aacgcttacg tcagcgagtg      3060
     cggcggtctc tcggccaacc aattcggttt ccgcaaggca agatccacca ttgacgcagt      3120
     cagcaaggtg gttggcatcg ccagcagcgc catcgaagga acaagatgga aaggaggctc      3180
     caaacggtac tgccttgtcg tcacgctcga cgtaaagaac gccttcaaca ctgcggattg      3240
     gagttgcatt atcagtgcca tccatgaact cggcgtccct ccgtatctcc tcgccatcat      3300
     tcggagcttt ttcaggcaga ggatcctgag atacggcacc tccgacggcc ctaagagtcg      3360
     taatgtgtct gctggagtgc cacaaggctc ggttctgggt ccgcttcttt ggaacctgat      3420
     gtacgacgga gtgctgcgtc tcccactccc gccaggttgc gaagccatcg gatatgctga      3480
     cgacgtggct attgttgttg ttgccaagga gctggagaag gcagaatcag tggcctcgca      3540
     agctatagcc agcatcacgc ggtggcttca gtcggttggc ctagccctgg cagccgaaaa      3600
     aacggaggcg gtcctgatca gcagtaggaa aacagttgag catgcctcag tgcaggtaga      3660
     aggttccacg atcacctcaa agcgggccat ccggtacctg ggcgtgtggc tagacacccg      3720
     tctatgcttc agggagcatc tggagaacgt tcaacggaga gcagcgagca caggacaggc      3780
     gttatcgagg ctaatgctga acacgagagg accgaaacag gagcggagac tactcctgat      3840
     gagtgtgctg aaatcggtca ttttgtatgc ggcacaaatc tgggccaacg ccatacacac      3900
     tacggcgtac agtaggggca ttaccgctac ctaccgtctc tgcgcgctaa gggtctgcag      3960
     cggttttagg acggtctctg aggatgctgc gctggtggtt gcaggcatga tccccatcaa      4020
     cttacttgcg gacgaggcca ggaacatcgc ggacgcaaag aggaacggta caccaaagcg      4080
     gacagctagc ggcgacgcaa ggatgcaaag cttagccatc tggcaagagc ggtgggattc      4140
     atctagcaag ggtaggtgga cccacaccct tatccccacg atcaggccat ggatcgaacg      4200
     gaagcatgga caggcgactt tccatctgac acagttcacc acaggacatg gctgtttcag      4260
     atcctatctc cacagattcg gacacgaggc tgagccgtac tgcctgacat gtggtgaagg      4320
     aatggtagag gacgcggaac acgccctttt cgcatgcagg cgattcacta gtcaacggcg      4380
     gctcctggag gaaacggtcg gcactgtgct gactaccgag aacctggtgc ccacaatgct      4440
     ggcagacgcg gcggcgtggg aagcagtgag cagctttaca ggcttcgtgg gaatcagcct      4500
     aagaaaggca gagcgtgaaa gaaatggcca tacgtaaagg gttataggtt tttgcgaagc      4560
     aattccccat gggacgtccc gcagaaaccc cccttatacg tatttgcagc tttaaatttg      4620
     taatatatat atattttgtt gttatttatg taataaatga attaaaaaaa aaaaaaa         4677
//
ID   R1-7_PPo    repbase;    DNA;    INV; 178 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-7_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-178
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3138-3138 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 178 BP; 45 A; 48 C; 51 G; 34 T; 0 other;
     gtcgcggaag attgcgcaag cgttcccgtg acccagccac ggcggacaga aggaacaccg        60
     ctgggttttt agtgggtatt ccggccattt tccatctttt ggccggcgag tcccacatac       120
     ccccctggca acggggggga tgcgtaaagg cattttccca gcgagaaaaa aaaaaaaa         178
//
ID   R1-8_BTa    repbase;    DNA;    INV; 6487 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-8_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-6487
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 722-722 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           526..2910
FT                 /product="R1-8_BTa_1p"
FT                 /translation="MKRCIHHNVYACKICKCTVHGVTDCVSKICSNIKFTE
FT                 IYGNSSKTNLEMSTKKVEMPQTSQEGTDNNIPGTQEKPQEIKDIIEFPTPI
FT                 NMEIGEKQLSLEEAHIKRDELIKNLQTLETQKANVNEALKKNIATVNRYPP
FT                 DDKRRREWLEAINKGNNSLKEIEEKTLLSRDLLKEVEKSIVILEKKNPIEP
FT                 ESEMEYLEEKNARPAEESINLEDTLNDSRDSLENFVKKENKRARKTLPKEN
FT                 FHGFDDGITRSRSSSLIRNTPPASRKASPQTQTQTRKSSEEPQKSDKPNDK
FT                 KENENTDKKKNLFENKQNKKPESKQSEAKSGPIPKKDPPKRKTLSQNNSQA
FT                 GNNQEQIKGNKEQEKPNNKNLFANIEKKPAVNTKSIQNQALNSDLLKKMES
FT                 TLRSFTEDTENSILSLCKNELKKAMENMMEHFNSIIIDISNNTLESKRIKT
FT                 LEKEKDNQKQEIEKLKKKVTELEKKLETKNSNNQDTKKLDQIAKSVKNITV
FT                 GLSKTYPEIQIENAPLETITKQKIMQSISKHDPHLEKFHIEGENVTTGTWA
FT                 EIAREKFPELKVERVKKSKTGIILETKDTKKMEEVIKTIKESNDAEIREIQ
FT                 PKKTITFRIANVDECLSIEEVKKQLISKNLINLGWNDEKLNENFRFITSHK
FT                 KKGRFSKDTLQQIYFNALPDLANALENTEKIYMGSSVCKIIPTILVLPCNI
FT                 CAALDHQSRFCPLSETDPICFKCGLKSHKSSDCKNEFKCVNCTKEKRKDTK
FT                 HSCTYYKCPCIVSEIEKRTNRYKWGNNESKGGIDLGKTNGESNA"
FT   CDS           2894..6181
FT                 /product="R1-8_BTa_2p"
FT                 /translation="MENRTLSQNFGLLQDNADTLSEEFYFTNKQLRKIIKK
FT                 PKMNHYYFNNETNRLSNHNLQIQDNKPIQSPKRIKFHVKNKNLNPNKIADL
FT                 PTNSNKKDRGYRAILCNAKKRIISVDIINNIASHKNAGIILITEPNAFKSK
FT                 RDNYFESIDNKVAIKTNQNLVGATDEWKSETNFVQFNWNNYLIICCYLNPN
FT                 DTHHELEISLLKLEMKIQKAKKKVIITGDFNSRSTLWGDKTTNFRGKMVEE
FT                 WFLSNDLYCHNDGENFIPTFSSSNYGESVIDLIFTTQDIKDEVVIDILPNE
FT                 TLSDHKAIKITLNKGLAEVNFTNKLQGWFMDPNKYKVFNKEIDNLMKSIDT
FT                 LTPELCKDIITTTANKVFSKKDDSRLKPKLTYWWNAEIKNLFKIGYKLDRK
FT                 IKFFKGQKRPTTILAQKLQVNKKEIENAIATSKKAKWTNMINDLDNDPWGK
FT                 GYKIASKKLKSPSSHDTNTISDEETLQIIEELFPVHKKCKWKKPTFKKEDI
FT                 PLITTEEVAHSLKKLKSGKSPGPDSIPQILVKFFVSRNIVKVQSMLNNLLI
FT                 KSEYPNEWKKARLILMTKPKKKKDDKKKYRPICILNAFSKIFEYIMHERLS
FT                 QLVTLSDNQYGFRKGRSTIQAVKKLIEIYKINRKIPYNNRKMMCIIGIDVK
FT                 NAFNSLQWKDIIRELENQNIPPYLIALMQSYLTNRRVETGDLWFMVTSGSF
FT                 QGSIIGPLLFNIVYDPIIKAKTDPDATNIAYADDMLKILITYDKTTLLRDS
FT                 ESITAQTNMQLKKRNLTMESSKTESLILEGKQIDRNEAVISVDGQVMEVGT
FT                 SLRYLGIFLDKGLSMSHHLRIVCEKAKKVTRHFQGIMPNIDGPSFLKRKLI
FT                 LHAIMAIIWYGIEIWSEACKFKNNIRMVTSTLRPMKRNLCRAYKTVSNKVL
FT                 DVLTDLPPADLLIEKNLRIRLKTEHKIEIETDINRRWNERWENALDTEDKW
FT                 LHRLLPSLKPWIERSHGDTDFFLTQFFSGHGNFNHYLFRFKVIDSSRCSLC
FT                 LSAEDTPEHTFFGCSHFSTLKNTLEQKLNGKFSPENCITYMLESLENWNLI
FT                 HAYVKEILQSKTHPPAPSAAAEDISQRDDSGIVHADMLT"
XX
SQ   Sequence 6487 BP; 2569 A; 1350 C; 1061 G; 1507 T; 0 other;
     taggtgacaa cctttttgat tttcccctca tcggttgagg agaaaatcac ttttttccgg        60
     gaaacttctg agcacttttc tgctcattat gtaacttttt tcgttttgac tttgccaaat       120
     tgtgatatat ttttctatgt tccacttttg acaaactcga ttttctctca tgaattgaca       180
     ttgggcgatg tgagctaatc tagtgattaa tcaaacgagc gtgataggga gcgaactccc       240
     accactgcta ctcgcatccg cgtcgggcca cctatttctc tccttccttc acactttgct       300
     ggataagtat aagcatgttt tcatcttgat tttgcaatcg aacgcctcga tttcttatca       360
     actgaacttg acggctacgc tggaataaca tcaacataac ctctctttcg tacaacttga       420
     gtcgcagcac cgcgtcggag taaccaaggc ccgcccacaa cagtgttgtg ggggcttacc       480
     ttgtttcctc ccgtggtcaa atacggaaag gactccttca aaggaatgaa gaggtgcatt       540
     caccacaacg tttatgcatg caaaatttgc aaatgcacag tacacggggt gactgattgc       600
     gtatctaaaa tctgtagtaa tatcaaattc acagaaatat acggtaatag ctctaaaaca       660
     aatctagaga tgtcaactaa gaaagtagaa atgccacaaa cttctcaaga gggaacggat       720
     aataacattc cgggaactca agagaaacca caagaaatta aggacataat agaattcccc       780
     accccgatca acatggaaat aggagaaaaa caattatcac tagaagaggc ccacataaag       840
     agggatgaat taataaaaaa tctccaaacc cttgaaaccc aaaaagctaa cgttaatgaa       900
     gccctaaaga aaaatatcgc cacagttaat cgctatcccc cggatgataa acgcagaagg       960
     gaatggttag aggcaattaa taaaggcaac aactccctta aagaaatcga agagaaaacc      1020
     ctactttcaa gagatttgct caaagaagta gaaaaatcca ttgtaatcct agagaaaaaa      1080
     aatcccatcg agcccgaatc tgagatggaa tatttagagg aaaagaacgc tagacccgcg      1140
     gaagaatcga taaatctcga agatactcta aacgactcta gggactcctt agaaaatttc      1200
     gtaaaaaagg agaacaaaag agctaggaaa actctaccga aagaaaattt tcacggcttt      1260
     gatgatggaa tcaccagatc cagatcctca tcattaatta ggaatacccc accagcttca      1320
     agaaaagctt caccccaaac ccaaacccaa acaaggaaat cctcagaaga accacaaaaa      1380
     tcggataaac ctaacgacaa aaaagaaaat gaaaatactg acaagaaaaa aaaccttttc      1440
     gaaaataaac aaaacaaaaa acccgaatct aaacaatcag aagctaaatc aggacccatc      1500
     cccaagaaag atccacccaa gaggaagact ctatctcaaa ataatagtca agcaggaaat      1560
     aatcaagaac agataaaagg aaataaggaa caagaaaaac ccaacaataa aaatcttttc      1620
     gcgaatattg agaaaaaacc ggcagtaaat acaaaaagca ttcaaaatca ggctctaaat      1680
     tcagacctcc tcaaaaaaat ggaatccact cttcgtagct tcacagaaga taccgagaac      1740
     tctatactct ctctatgtaa aaacgaattg aagaaggcta tggaaaacat gatggaacat      1800
     ttcaactcaa taattataga tatatcaaat aatactctag aatcaaaacg cataaaaact      1860
     ttggaaaaag aaaaggataa tcaaaaacaa gaaattgaaa aactgaagaa aaaagttaca      1920
     gaactagaaa agaaactaga aacaaagaac tctaacaatc aggacactaa aaaactggat      1980
     caaatcgcaa aatcggttaa aaatatcacc gtaggactca gtaaaacata tccggaaata      2040
     caaatcgaaa acgctccact cgagacaata actaaacaaa aaatcatgca atcaatctca      2100
     aaacatgatc cacatctaga aaagttccac attgaggggg aaaatgtaac aacaggaaca      2160
     tgggcagaaa tcgcacgaga aaaattcccc gaactaaaag tggaaagagt aaaaaaatca      2220
     aaaactggaa taatcttaga aaccaaagat actaaaaaaa tggaagaagt gataaagact      2280
     ataaaggaat caaacgacgc cgaaattagg gaaattcaac caaagaaaac catcactttt      2340
     agaatcgcaa acgtggatga atgtctctct attgaagaag taaagaaaca gcttatctcc      2400
     aaaaatctaa ttaatttagg atggaacgat gaaaaactaa atgaaaattt ccgattcatt      2460
     acatcccaca aaaagaaagg cagattcagt aaggatacac tacaacagat ttacttcaac      2520
     gcactaccag acctagctaa tgcactagaa aacaccgaga aaatatacat gggctcatca      2580
     gtttgtaaaa tcatcccaac gatactagtt cttccatgta atatttgtgc cgcactagat      2640
     catcaatccc gcttttgtcc actatcagaa acagacccca tctgtttcaa atgcggactt      2700
     aaatctcaca aatcatcaga ctgcaagaac gaatttaaat gcgtaaactg cactaaagaa      2760
     aaaaggaaag atactaaaca ctcttgcaca tactacaaat gcccatgcat agtatccgaa      2820
     atagaaaaaa gaaccaacag atacaaatgg gggaataatg agtctaaagg agggatagac      2880
     ctaggaaaaa ctaatggaga atcgaacgct tagccaaaat ttcggcctac ttcaagataa      2940
     tgccgatacc ctctctgaag aattttattt tactaataag caattgagaa aaatcataaa      3000
     aaaacctaaa atgaatcatt attactttaa taatgaaaca aatcgtctct ccaaccataa      3060
     tttacagatt caagacaata aacccataca gtcaccgaaa agaatcaaat tccatgtcaa      3120
     aaacaaaaat ctgaacccta acaagatagc agacctccca accaactcca acaaaaagga      3180
     ccgaggatat agagctatac tctgcaacgc gaaaaaacga atcatatcag ttgatatcat      3240
     taataatatc gcatcccata aaaacgcagg tataatcctt atcaccgaac ctaacgcctt      3300
     taagagtaaa agagacaact actttgaatc gatagacaat aaagtagcga tcaaaactaa      3360
     tcaaaaccta gtaggagcca cagatgaatg gaaaagtgaa acaaattttg tacaatttaa      3420
     ttggaataac tatctcatca tatgctgcta tctcaatcct aatgatactc accacgaatt      3480
     ggaaatctct cttctaaaat tagaaatgaa aatacaaaaa gctaaaaaaa aagtaattat      3540
     cacaggtgac tttaatagta gatcgactct atggggagat aaaacaacta atttcagagg      3600
     caaaatggta gaagaatggt ttctcagtaa cgatttatac tgccataacg atggggaaaa      3660
     ttttattcca acattctcta gtagcaatta cggtgaatca gttatcgatc ttatttttac      3720
     cacccaagac atcaaagatg aagtagtaat agatatctta ccaaatgaga cactcagcga      3780
     tcataaggca ataaaaataa ctctcaacaa aggattggca gaagtaaact ttacgaataa      3840
     actccaaggt tggtttatgg atcctaataa atataaagtt ttcaataaag aaatagataa      3900
     tttaatgaaa agcatagaca cacttacccc tgaactttgc aaagatatta ttaccacaac      3960
     cgccaataaa gtgttctcta aaaaagacga ctctagactc aaaccaaaac tcacttactg      4020
     gtggaacgcc gagatcaaaa atcttttcaa aataggatac aaactagaca gaaaaataaa      4080
     attctttaaa ggacaaaaga gaccaaccac catacttgct caaaaacttc aagtcaacaa      4140
     gaaagaaatt gaaaatgcca tagccacctc caaaaaagct aaatggacaa atatgatcaa      4200
     cgacctagac aatgacccct ggggcaaagg ctataagata gcaagtaaaa aactaaaaag      4260
     tccttcttcc catgacacta acacgatatc agatgaagaa actctacaga ttattgaaga      4320
     actcttccca gtacataaaa aatgtaaatg gaaaaaacca actttcaaaa aagaagatat      4380
     ccccttaatc acaaccgaag aagtcgcaca ctccttaaag aaactcaaat caggcaaatc      4440
     accaggacca gactccatcc ctcaaattct tgtaaaattt tttgtctcta gaaacattgt      4500
     aaaagtccaa agcatgttga acaaccttct tataaaatcc gaatatccga acgaatggaa      4560
     aaaagccagg ttgattttaa tgaccaaacc taagaaaaag aaagatgata aaaaaaaata      4620
     tcgtccaatt tgcatactca atgccttctc caagattttc gaatacatca tgcacgaaag      4680
     actctctcaa ctggtcaccc tttcggataa tcaatatggt ttccgcaagg gaagatccac      4740
     cattcaagca gttaaaaaat taatcgagat atataaaatt aacagaaaaa tcccatataa      4800
     caaccggaaa atgatgtgca taattggcat agatgtgaaa aatgctttca attctctcca      4860
     atggaaagat atcattcgtg agctcgagaa ccaaaatatc cccccttatc tcatcgcttt      4920
     aatgcaaagc tatctcacta acaggagagt tgaaacaggg gacttatggt ttatggttac      4980
     atcaggtagc ttccaaggaa gtatcattgg tccgctcctt ttcaacattg tctatgatcc      5040
     tataatcaaa gccaagacag atccagacgc aacaaacatc gcttatgcag acgacatgct      5100
     taaaattctg attacatatg acaagactac actactcaga gacagtgaaa gtataacagc      5160
     acaaacaaac atgcaactaa aaaagagaaa ccttaccatg gaaagctcga aaactgaatc      5220
     tttgatcttg gaaggcaaac aaatagatag aaacgaagct gttatatcgg ttgatggaca      5280
     agtcatggag gttgggacat cgctcaggta ccttggtatc tttttggaca agggcctgag      5340
     catgtcccac catcttagga ttgtctgcga gaaggccaaa aaagtcacga ggcactttca      5400
     aggaataatg ccaaatatcg atggtccctc attccttaag aggaaactta tcctccacgc      5460
     aatcatggcc atcatctggt acggaattga gatatggtcg gaagcctgca aatttaagaa      5520
     caacatcaga atggtcactt ctaccctaag accaatgaaa agaaatttat gtagagctta      5580
     caagacagtt agtaacaaag tattagacgt tctaacagac ttacctcctg cagatctcct      5640
     aatagagaaa aatctaagaa tcaggctgaa aacagaacat aaaatcgaga tagaaacgga      5700
     tatcaacagg cgatggaacg aacgttggga aaatgctctg gacaccgagg acaaatggct      5760
     ccatagacta ctaccatctc taaaaccttg gatcgaaaga tctcacggcg atacagactt      5820
     tttcttaact cagtttttct ccggtcacgg aaactttaat cactatcttt ttcgctttaa      5880
     agtaattgat tcctcccgat gttccctatg cctgtctgca gaggacacgc cggaacacac      5940
     attcttcggc tgcagtcact tctccaccct taaaaacact ttagaacaaa aacttaacgg      6000
     aaaattttcc ccagaaaatt gtataactta catgctcgaa tcacttgaaa attggaatct      6060
     aatacatgct tacgtaaaag aaatacttca aagtaaaaca caccctccag cacctagtgc      6120
     tgcagccgaa gatatatccc aaagggatga ttccggcatt gtccatgcag atatgctaac      6180
     atgagtttgg tttagttggt cggctcgacc tcggtccccg atcttcccta accttgcaca      6240
     ctcctgatca gagtttattc taaattagag cccaaaccaa catatgatag tttaaccatc      6300
     tagaggacca cctggccgaa acccacccta tgcttagggt ggtagtgcga aacaggtgga      6360
     agtcgaaatc cccgactttg atttatcaca gccggaggag taagatgctt aaactgtcat      6420
     atcttcgata agattcgcca ctttttctca tggtcaccaa aaaaaaaaaa aaaaaaaaaa      6480
     aaaaaaa                                                                6487
//
ID   R1-8_DTa    repbase;    DNA;    INV; 5417 BP.
XX
AC   .
XX
DT   25-JUL-2021 (Rel. 26.10, Created)
DT   29-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-5417
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5919-5919 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 5417 BP; 1528 A; 1498 C; 1473 G; 893 T; 25 other;
     gtgaagtggc gaagagtggc accgcgtatg tgctccccaw aaaacccgcg aaatcccgcg        60
     ctgtggcaga atagtatgga maaaaagggg ccccacgcat gagggacgsa ccctagagac       120
     tcacccggtg aaggmgacgc cgaggatcca cggacgcccg ctggccgcga tcgtaccccg       180
     agcttggctc ggggccatgg gtgagakaag tctgctactt tctctttgat gtctctttgt       240
     cccactactt ttctctttgt gtgcaacttg gttgcactta caacacacca tgcgctggtc       300
     acgcgctgta aacgcaagga cggcactgat ccggcmacgc tgtataactt gtggcacctg       360
     accgcctggg ggcgctgttg cgctcactga caaaaggtac ctgctacggg tttcacttca       420
     agaccccgta gatcgtagca tacattcctg ggctgctgct gccaatcctt ggcagaagga       480
     ctcgggaagc aggcgaaaac accgtcaggg tgagcactgg ggaatcaaaa aggtgttaaa       540
     ggtcatggaa ccgactatca gccaacccca ccgccaaggc ggcacacctc aaaatgggag       600
     caatggcaac cgagcaggag cggtataact cccaccggaa aagccgtggg gaaactcatg       660
     gccaccgatg gaccctaacc gtgcacacca tccactcgcc caacaatcca caatgcgact       720
     gacccataat gggcggcaaa gtgggctgcg tctgcgccat aatggccggc agtaaataaa       780
     cctggaaaat ccacgtagcg tctgacccac actgggcggc tgcgtggtct gcgtctgtgc       840
     catagtggcc ggcagaaaag caacctggca gcaggtataa aatgcaaccc tggcattggt       900
     ttaaaatgcc cacatcaaga ggaatgtcga ctaataacaa aattactcca ggtggcagcc       960
     acaaaagtgg aaatccactc gtgcggagaa atccggcgac aggggcaagg attctggagg      1020
     ccccaatcaa cattcaaaat gaaaacgtaa atgcaccgcc agtggctcac ttggctgacg      1080
     atgcatccaa agaaacaagc cacgagctat tcgccttctc caaagcgacg aagatgaaga      1140
     ggaccccacc tacccagcct gctacaccgc aaggcagtgc tccgggttta cctagcgtca      1200
     aaggccaggt cgacgtcgag actgacactc caaagagggc cagagaagaa agcagtccct      1260
     ggaaagcaac actgccgaag gtgccaaaag aagcaaaggg aacctccgga acatagacga      1320
     gatcgggaga atcctggatg acctgctcta tcaggtcagt gagaagaagc cagtccagcg      1380
     gacaatcaac gcgtccataa aggagatgtt ggcccgcatg aagaagctgc agcaacttgt      1440
     ctgcactcag ttaagcgagt tccccagcgg cactatgacc tgccgctgcc agcaagaccc      1500
     aacagcagaa ggccacccga accaggagaa ggagacccag acgaccccga aaaggaagga      1560
     cgatggcggt taccccaaac tgcctggacc acctggcgcg accaagcaag gcatggactc      1620
     aacccagtgg aaaaaggctg ggaaacagca agagtcgccg aagcccaata ggccgcagcc      1680
     ctcggacccc aaaagggact ggacggaggc taagagtcga agggaaaaac cgaaggagca      1740
     aaggaaaaag cgggcactac gagacgcmat tctggtcaag tgcaccagcc ctgcagggaa      1800
     tgaaggataa agtgcacggc accaggagga cagcaaaagg ggagctcwtg ctaagcatgc      1860
     aaaaccmctc cgacccggca acccaggagg tccaaggggc cwtgaagaca gsgctctcag      1920
     gtcaagcaga ggtccgggcg atgcaagaca ccactccgat tgagatactg gatatcgacg      1980
     agtcaactam aggcgatgaa gtcctagagg ccctatactc ctctctggat gaggacatac      2040
     cagtagaggc ttcaccaaca gwgaaaagcg caatgagagg aacgcaatcc gcgkwkatta      2100
     ggctgaamcc cagcctcgcc gagcacctgc tgaaaatcgg taaaatgcgc atcgcagaat      2160
     cagacgaaaa ctggaggtac agacgcagaa actgccgcac gaaacacgca atctctaagg      2220
     acacgtgctt caaatgcgga ctgcctggtc acaatagcag gaactgcagc aaccctccga      2280
     aatgcttgct atgcactcgg aaggggcccc agaaccggtc actcggtctt caaccgacgc      2340
     tgcccggaat accagaaggc actagctcag ctcaaagatg gttagggtac tgcagctaaa      2400
     ccttaaccac tgcagagcag cgcaggacct gctcgcgcaa acagtcctga gaagaacata      2460
     gatgtggcaa tcctcagtga gccatataca gcaaaacatg acggagtatg actacaaagc      2520
     catgacggcg gcgcagcaat ctggagctgc tcaccaaaca gcagacagct aaccgagcga      2580
     ctagccaagc ctggatacgc aagggctaaa tacaatggga cgtttctcta cagctgctac      2640
     attccaccgc gcttcacgct accggaattt gaggatatca tcttcgacct ggtcagcgat      2700
     gcgagtggaa agtcaccagt gatcattgcg ggagacttta atgcctgggc cacggagtgg      2760
     ggttccagcc gctcaacgcc acgaggaata tccctgctgg atgcctttgc agccctaaat      2820
     gtgtgcttgc tgaacgtcgg aagccagcca acgtacagca aggcaggagg ggagwcggcc      2880
     atcgacctga cccttgcgag cccggtmatc tgcaggacct ccagatggac ggtggaagac      2940
     ctgtacaccc acagcgacca cttcgcggtg atcacggaca ccggtgccgg cgggkccaca      3000
     acctcgctca cgcccggagc cacccgattc agagagggaa cgctgaatca aagcctgctc      3060
     cttcgcgcag tacaaggcct gagcggcacg agccatcaac gacgcatgcg aggcggcgat      3120
     gacgaaagct aggattggtg gaagacgtca ctgcccggta ccctggtgga acgaagacat      3180
     tgccaaagca agaaaggaat gccacgcagc cagaaggctc tcacagagag ctagaaactc      3240
     aaggagcttt gaccacgccc aagtcctctt cagagaaagg cgaaaggccc ttaaagatgc      3300
     catcaagcga agcaagcaga ggtgctttca ggaactgtgt gatgcagcag acgcccaacc      3360
     atttggkgct gcwtacaaac tagtaaccgg gaaactatgc agacctccta tgcccagaga      3420
     ccctgctcaa ctggaagaca tagtcgtgtc gctcttccca aaccaagcac cgcttgaggc      3480
     aggcccagac cccaacactc tgggagaagc agagctaacc acggaccgtg aagtccttga      3540
     aacagcagcc aaactaaaaa atgggaaggc accgggaccc gacggagtac caaactcagc      3600
     gctgaagcac ataatagccg cacaccctga ggtctttgcg cagatgtaca actgttgcat      3660
     cacagagcga gtagtaccaa aggcctggaa actccaaaag ctggtcctta ttccaaaacc      3720
     aggcaaggac cctagcgacc cgtcggcata ccgcccgctt tgcatgctag actcaatagg      3780
     gaagatcttt gagaggatag tctgcaaccg gctggaaacc gaactagcgg ccaaacgagg      3840
     gatctccgag ttacagtacg gcttcaggaa gaagcgcagc accgtagacg ctatcagcac      3900
     ggtggtgaga ctcgcctctg atgctattgc aggtaccaga tgggcaggag gggacaaaca      3960
     ctactgtctt gtgtgcacgc tagacgtcaa gaacgcgttc aacacggcma attggagtcg      4020
     catcctggag gccctcacaa agcgggggat atcacagtac ctgatcgata tcttacgcag      4080
     ctacttcacg gatcgagtgc tgatctacga gacggaccaa ggccaacgcc gacacagagt      4140
     gactggaggg gtcccccaag gctcagttct tggaccgacg ctatggaacg cgatgtacga      4200
     tgacatcctg cggctcccac ttccggaggg ctgcaccctc atcggatttg cggacgacat      4260
     tgccttggtt acggtgagga aagagctcga agaagtaaag gcttcttgca acgccgctgt      4320
     aggcaatatt tgccagtggc tacaacgcaa cgggctcaag ctggccgaac acaagacgga      4380
     ggcagtcttg gtgagcagta gaacaaaagt agagcaggct actgtcaccg ttggagctac      4440
     agaaatcctt tctggaaggt ccataaagta cctcggcatc atgcttgacg atcggctgac      4500
     atttaaagcc catctgcaat acgtcggaga aaaggctgca agaaccacag gtgccattag      4560
     cagaatgatg gcaaacacga cagggccgag acagcgaagc aagaagctca tagcaagtgt      4620
     agtatcctcg gtgatactct acggatcgag catttgggca ccagctatga aaatggagtc      4680
     gtacggcaaa gagtgcagac gcagctatag gctatgcgcc ctmagggtat ccagttgctt      4740
     ctgcacagtg tcagaggaag cggcactggt gttatccggt atgataccac tagacctaca      4800
     agctgacgag agacaaaccg gaaacgccgt cgcacgtgaa cagcgatgcc gaaccatcga      4860
     gagctggcaa cgaaggtggg atagtgccag cacaggccgc tggactcgga ggctcatccc      4920
     aagcatagac gcatggactc gcaggaaaca cggccaggtg gatttttacc taagccaagt      4980
     gctcactggg catggttgct tcaaagctta cctcaatcgg ttcgggcatg cggatgaccc      5040
     cttctgcgag tactgccagg acggggaaat agaagacgct gagcactcct tcttcaggtg      5100
     cccactcttc agcagacaaa ggcgcsgcct agaagatgac atcccggatc tttcgccaga      5160
     cacactggtg aagcgcatgc tatcgagcga ggctgcatgg aaagcggcgg caaatacggc      5220
     cgccatcatc atgaaggagc tccgacaccg agaaagggcc agaactccag ttaatggatg      5280
     attgaccccc ctcccgtccc gtgaagtaat gcctagcggc ggttccgcgg gactggacac      5340
     ctcacccaat ccatacccta cccacatccc aacccctgtt acttgtatta aacttgttaa      5400
     taaaaaaaaa aaaaaaa                                                     5417
//
ID   R1-8_DWi    repbase;    DNA;    INV; 5178 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-8_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5178
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1969-1969 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~95% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           565..2004
FT                 /product="R1-8_DWi_1p"
FT                 /translation="MNKSVVSIDHQARCAMADVQNTXWEESAFGSRPRLLR
FT                 SPPLSTDTPVNVNXAKNPDARAIQVQALNNFDAPTVTSQIEELNELGNLIW
FT                 QLDSMFNRADDGRKPVRHVNLSTKNSIVRMMELHETLCRKMTDSHPAKMVX
FT                 KGVIATQTTPVMNNHLGLPISLSQPAKTATPKRQREDAATQRKTPPKRGKT
FT                 TQRSRPEQLETNLANTXTSWANSVNAAEADAEWQTVSRKRPNKQPARRDKP
FT                 AAIVIQAQEGFSYAQILGMVTRRTDGKLDGVKNNVKRTRKTAKGELLLELK
FT                 RDGDPDCQKLRNELSQVLGQQASVRAVGTEAWIEIRKLDTLVSADHIIEAL
FT                 TKIIGDATANVRVRSLRHTFGDTQLAVLSMPRSTADSLLKTGSIAIGWTLC
FT                 PIRERQSKQRCYKCLNFGHTAAKCSSSIDRTNWCLKCGATDHKAASCSNFP
FT                 VCFNCVDAKRQQVGHYTGSRRCPMASAGANQQQNL"
FT   CDS           1854..4565
FT                 /product="R1-8_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MWGDRPQGSLMQQLSCLLQLRRRQTTTGGALHWQPTL
FT                 PNGECRSEPAAKSMKLLQLNLNHCAAAHDLLAQSVRELNIDVAILSEPYRT
FT                 RPGSSWATDSSGKAAIWLCGNRTPPMQHIYAHRGFVRAYIGDIWVYSCYLA
FT                 PSLTPQEFESAMDQLALDARGKGKTIVAGDFNSWSKEWGSARTNSRGRTTL
FT                 ESLASLELVVLNTGNRHTFCRAGYGSVIDVTFASRQIAAQTNWQLCSHYTA
FT                 SDHLAILCTIGSRPAENATTDQNAKMFRVDTLNITTFEESLRIPPFTGDAN
FT                 KFAKTLVDAVLAACDASMAARRCHSKQKAPVYWWNASISEARRRCLQCRRQ
FT                 YQRARGMPEFFSLQAQYKLRRRELKLAIKESKRXCFLEMCNAAENDIWGAA
FT                 YKVAMKKLNANKPATPNESQMKLIVETLFPNTSAISPRPTRIANTRDVRDI
FT                 SPEEILAVAARLQDQKAPGPDAIPNKALKLAARLQPEKFAEVFNKCMHDGI
FT                 FPDSWKLQNLVLLPKPNKPAEDPSAYRPICLLDSVSKLFEKLLAQRVESAI
FT                 KNSGDLSPMQFGFRRAKSTIDALQTVVDIASNAIEGQRWKGGKKEYCLVTT
FT                 LDVRNAFNTANWSRILSSLREFRVPEYLVLMVEDYFRNRILRYNTQSGWRT
FT                 HVVKGGVPQGSVLGPILWNVMYDGVLRLSLPPGTQIVGFADDVAIVVVAKH
FT                 LHETESKTAVAVDIVKGWLNNVGLQLAVQKTEAVLISSRKVVEVAEISLDT
FT                 CKITSSRAIRYLGILLDTRLSFKEHLEHANTKAAEVGRCITRFLLNSRGPS
FT                 QRQRVLLVNVVRSIMLYGAPIWATAMRQKSYRQGLESTYRLGAIRVCRGFR
FT                 TMSDEAALVIAGLTPIDLLAKESQYIYNRGKLANGRHWQSKRPKEQPEERA
FT                 "
XX
SQ   Sequence 5178 BP; 1451 A; 1366 C; 1295 G; 1047 T; 19 other;
     gttaaagtgg tgcggtccta tactcgcggg cgctcccktt caagatcgtt ttttctctgc        60
     gtgtccagag ggcctgaaat ttaaacttcg acgggtcaag aagggcctcc ataggactgt       120
     ctacgtacct cgttgcgggg actcctctgc cgcctgwgtg ctggccccga aacttgtttg       180
     ctggacctcc acttggctgg accattggtg ccggtagggg tgagggggag gctgcagatc       240
     gcctctcttt gtcttttttc ccgcctctct catcgcttgc wcctgtcttt gctggtgtgg       300
     gtgagaaaca tcccttttac ccacctttct ccaaactttc tttgttgttg cacgacgtgt       360
     tcttcgtcgt cacaccgcca cgtaccagct gattgtacca gtgttggaaa acgaggaaag       420
     acacagggga gcccctagcc ataaatcggc aggtggcgcc tctgggccaa ccgtttcgaa       480
     gcttcttctt cctccggatt tgaattcaaa ttcgaattta aattcaaatt cacaaactgc       540
     aaccgatmct ctccagccak ccacatgaac aaatctgtgg tatccatcga ccaccaagcc       600
     cgatgcgcaa tggcagatgt gcagaatacc mamtgggaag agtctgcttt cggcagtcgt       660
     ccacggctct tgcggtcacc gcccctgagc acagacacgc cggtaaatgt aaatgktgct       720
     aaaaacccag atgcacgagc tatacaggtg caagcattaa ataactttga tgctccaacg       780
     gtaacttcac aaatagaaga gctaaacgaa ctgggaaatc tgatctggca gctcgacagt       840
     atgttcaaca gagctgacga tgggaggaag ccagttcgcc acgtaaatct gagtactaag       900
     aactcaatag tgcgtatgat ggagctgcat gaaacactgt gccgaaaaat gaccgatagc       960
     caccccgcaa aaatggtcca waagggcgtc atcgccacgc aaacaacacc ggtgatgaat      1020
     aaccatctgg gtcttcccat aagtctgagc cagccagcta aaacagctac gcccaaacgc      1080
     cagagagagg atgccgccac tcagcggaaa actccaccaa aacgtggtaa aacgacgcag      1140
     cgttctcgac cagaacaact ggaaaccaac ttggcgaata caawcacatc gtgggccaat      1200
     tcagtcaatg cagccgaagc ggatgcggaa tggcagacgg tgtctcgaaa gcggcctaac      1260
     aagcaaccag ctcgaaggga caagcctgcg gccatcgtga tccaggccca agagggtttc      1320
     tcttacgccc aaattcttgg tatggttaca aggcgaaccg atggcaaact cgatggagtc      1380
     aaaaacaacg taaagcgcac aagaaagacc gccaagggcg agctgctgct agaactcaag      1440
     cgagacggcg atccggactg ccaaaaactg aggaacgagc ttagccaagt tctaggccag      1500
     caagcgtcgg taagggcagt aggaaccgaa gcttggatcg agatacgcaa actcgatacc      1560
     ctggtatcag cagaccatat tatagaagca ttaacgaaaa tcattggcga tgccaccgca      1620
     aacgtgcgag tccgaagctt gcgccatact tttggtgata cacagttggc tgtcttatca      1680
     atgccgcgct cgactgctga ctccttgctc aagacgggat caattgcaat aggatggacg      1740
     ctctgcccga ttcgggaacg gcaatcaaag caaagatgct acaaatgctt aaacttcggc      1800
     cacacggcgg caaagtgcag tagctcaatc gatcgcacaa attggtgcct caaatgtggg      1860
     gcgacagacc acaaggcagc ctcatgcagc aactttcctg tctgcttcaa ctgcgtagac      1920
     gccaaacgac aacaggtggg gcattacact ggcagccgac gttgcccaat ggcgagtgca      1980
     ggagcgaacc agcagcaaaa tctatgaagc tactacaatt aaatttgaat cactgtgcgg      2040
     cggcgcatga tttactagcg caatcagtaa gggaactgaa tatagacgtg gcgattctga      2100
     gcgagccata tagaacccgg cctggcagct catgggcaac agactcttcg gggaaagctg      2160
     caatctggtt gtgcggcaat cgtactccgc ctatgcagca catctacgca catagaggat      2220
     ttgtcagagc atacataggc gacatatggg tgtacagctg ctacttggca ccaagtctta      2280
     ctccccaaga attcgagtcg gcaatggacc aacttgctct ggatgccaga ggaaagggca      2340
     aaacaatagt tgcaggcgac ttcaactcgt ggtccaaaga atggggtagc gcccgaacaa      2400
     actccagggg ccgcacaact cttgagagcc tcgcctcact cgaacttgtc gtgctaaaca      2460
     cgggcaacag gcacacgttc tgcagagctg gctacggatc agtgatcgac gtcacatttg      2520
     caagccggca aatagcagca cagaccaact ggcaattgtg tagccattac acggctagcg      2580
     accatttagc cattttgtgc acaatcggca gccgccccgc cgaaaacgca accactgacc      2640
     aaaacgctaa aatgtttaga gtggatactt tgaatatcac aacattcgag gaatccctca      2700
     gaatcccacc cttcactggc gacgcaaaca agtttgctaa aacgctwgta gatgccgtac      2760
     tagcagcctg tgatgccagc atggcwgccc gtagatgcca cagcaagcaa aaggctcctg      2820
     tctactggtg gaacgcatct ataagcgagg cgaggaggag gtgcctccaa tgcagacgac      2880
     aataccagag agcgcgtgga atgccagagt tctttagcct ccaggcccaa tacaagctta      2940
     ggcgaagaga actaaaactc gcsattaagg agagtaaacg caamtgcttc ttagaaatgt      3000
     gcaacgccgc cgagaacgat atttgggggg ctgcttacaa agtggccatg aagaagctca      3060
     acgcaaacaa gcccgcgact cccaacgaat cccaaatgaa gctcattgta gagactctgt      3120
     tcccgaacac ctcagctata tcgccaagac ccactcggat cgctaataca cgagacgtcc      3180
     gcgatattag ccccgaagaa attcttgcag tcgccgcaag gttgcaggac caaaaggccc      3240
     caggcccaga tgcgatacca aacaaggcgc taaaactggc ggcacgcctc cagcctgaaa      3300
     aatttgcaga agtcttcaac aaatgcatgc acgatggcat tttcccagac agttggaaat      3360
     tgcaaaatct ggtgcttctg cccaagccga acaagccagc cgaggaccca tcagcataca      3420
     ggccaatctg ccttctagac tcggtctcga aactgttcga aaaactgctg gcgcagagag      3480
     ttgagtccgc catcaagaac tctggcgacc tctcaccgat gcagtttggg tttagacgcg      3540
     caaagtccac aatcgacgcg ctacaaacgg tagttgacat agccagtaat gccatcgagg      3600
     gccagcgatg gaagggtggc aagaaagaat actgcttggt caccactcta gatgtgagaa      3660
     acgccttcaa caccgcaaac tggagtcgga tcctaagctc tcttcgggag tttcgggtac      3720
     cagagtacct agtcctcatg gtggaagact atttccgaaa tcgtatcctg cgctacaaca      3780
     cccaaagtgg ctggcgcaca catgtcgtca aaggaggtgt cccgcaaggc tccgttctgg      3840
     gcccaatcct atggaacgtg atgtatgatg gcgtgcttag gctttctctc ccacctggaa      3900
     cccagattgt cggctttgca gatgacgtgg cgatagtggt ggtagcgaag cacctacatg      3960
     agacggagag caaaacggcc gtggcagtcg acatagtcaa aggatggcta aacaacgtag      4020
     gcttgcagct tgcagtccaa aaaaccgaag ctgtcttgat cagcagccgc aaagtcgtgg      4080
     aggtagccga aatttctcta gatacatgca aaataacgtc atccagggca atacgctatc      4140
     taggcatttt actagacacc cgccttagct tcaaggaaca cctggagcac gcaaacacaa      4200
     aagctgcaga agtaggccgc tgcattacgc ggttcttgct caactccaga ggcccaagcc      4260
     aacggcaacg ggtactattg gtaaatgtcg tgagatcgat aatgctctac ggagctccta      4320
     tttgggcaac ggctatgcgg cagaaatcat atcgccaagg gctcgaatca acgtacagat      4380
     tgggagccat acgagtgtgt cgaggcttcc gaacaatgtc cgacgaggct gcgctagtca      4440
     tagctggact gacacctatc gatcttctgg cgaaggagtc ccagtacatc tacaatagag      4500
     gcaaactagc gaatggacgc cactggcaaa gcaagaggcc aaaagagcag ccagaagagc      4560
     gagcttagaa gactggcaag caagatggac atcctcaacc aaaggcagat ggacgtttag      4620
     gctgatcccg aacctggagc cctggctctc gagaagtcac ggcgaagtaa cgttcgagtt      4680
     aacccaattg ttaagtggcc atgggtgttt caacgcatac ctacaccgat ttgggcacga      4740
     aagcagccca gaatgcatgc tatgccaaaa cggcgtagtg gaggatgccg agcatgtgct      4800
     tttctgctgc ccgagattcc agagtgaacg ccatgagctc gaggaagcgt ttggggaact      4860
     acctacggtc gagaacaccg ccaacataat gtgtgctagc caaggaaagt ggtccgcggc      4920
     ctgcacattt gcaaaaaaag ttatggacgc tcttcgccgc ctggagaggc agcgaaacgc      4980
     ctgaggggca tgaggcccgc cttttaagcc tgcgaagcaa taccccccgg cagtcccgca      5040
     ggttaaattg gcacccaama cattttcttc aatgtccttt cscacttcta ccttctccac      5100
     actataccct tccatcttwm tctaactttg ttacttwtta ttgttaaata aatgaattaa      5160
     aaaaaaaaaa aaaaaaaa                                                    5178
//
ID   R1-8_PPo    repbase;    DNA;    INV; 176 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-8_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-176
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3139-3139 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 5'-truncated.
XX
SQ   Sequence 176 BP; 45 A; 43 C; 46 G; 42 T; 0 other;
     cccggagaag ggagtaaaaa ctaacgctta aggggacatg gttgtgttcc aggagatccc        60
     attccccctt tttagcgatg ttggcgacca ccgtggggtt ttagtcggtg cgagtccgac       120
     atattccgac tctagcccca tgaatatgcg taggcatttc cccacgtaaa aaaaag           176
//
ID   R1-9_BTa    repbase;    DNA;    INV; 7160 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, a sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-9_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-7160
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 723-723 (2018).
XX
DR   [1] (Consensus)
XX
CC   from a single locus.
XX
FH   Key           Location/Qualifiers
FT   CDS           570..3200
FT                 /product="R1-9_BTa_1p"
FT                 /translation="MKRCTAHGVIYCNICKCLQHNKTDCDSQLCFENKIYN
FT                 INISKQQQRSTECNKERNQEKQTQIEQESNQNPQQQNQEEMETSKPQKSSS
FT                 DLTSDLTPKGNSLEQTPTEDPTTSHSTDQGKTIMDEMKKLTILKEEHEQAI
FT                 KVIRQMIYEIDNGGTLEIRIGNKIFSKSNEVRTNLMNTKMFREEQLKLTQE
FT                 QLKHLKNDPNQTTTDKQTTNIRKLDKEEENINFEIVNEVKRRRMETAGDKS
FT                 EETPNSETTEENSNDKDRKEETNVELMDTQNTETKEEQGSKRRCKNYTSNT
FT                 SDEDDLNKTFSDPEITTPSRKRKLKSKIEKKRTPLKNTRNTKPDIRTSTPT
FT                 PTLTTKTKPTQDTYQTDSEMEIEFEKGTKYDQLNKEDQLNKEKEKGDKKHL
FT                 QQQQQSSENNNELPPGAFNTKINFNSKINSKTNKTQNQPKEKTDKKKEEKL
FT                 NKKPIENKTSISKENEDTKINRESPQIIEKIENFLENMKKTGEKQMQGIMK
FT                 EYMNNINKEINSKINDILENTFVSKQIEQYKKELNDKDKTIKNQEKEIEKL
FT                 KEENKKLKEKPQTENNKEMNKKIDKIYENNNKMFDAMKSTNTVLKEKEEPW
FT                 NVQLGKKIRKAKDTMNPNMKKLHIPETDRNSFANILKKQNIDVKIDQVITS
FT                 KNGVTLAITDQKSAEEIKQKLDENKSTYRELEPKRIYTYKITNIDACLDTE
FT                 DIIQDLLKKNLHERGWKREKLDENLKHVATFKVTGRYSKDNLQTVFFNATS
FT                 ELSEDFDKIKLVYIGSTRCKIYPTVLVLPCRKCGSLSHQTRFCEIKEDKYI
FT                 CYKCGNSNHKSSECKNKIKCIHCAAAKKSDTNHTTGSQFCPFVYAEAQRRG
FT                 RRLIWNSTEDEGGIILPSNGESTA"
FT   CDS           3184..6870
FT                 /product="R1-9_BTa_2p"
FT                 /translation="MENRQPENSDTLEEVYSSSDSEKSIAKYIDNNLFGNF
FT                 MSKIEKALKPQNYLLSEQKSKNFFKRNLPENRSNFKTNHNRRKTSSKNSSN
FT                 IISTDNEDPDDPDWNPQEGHKGNALSKIEKALKPRHLKTLKQRNTSTNVSN
FT                 RFSILDTSSEEEPTQETQKMTQTLIDTYLQKTQEDSDLSENISSAEQIKFF
FT                 RKNKTNFNTTSTNQELEIFEHSITQDTHGFNAILCNTRKRVICMNIIDNLA
FT                 THKKAGIVMFTEPNSKKSQTENYFESIDKKVAIKTTKDLTGSTENWNSYRN
FT                 FNTFQWNGITIICCYLNTEEKDSELEGSLDEIESIIKKHQNQKVIITGDFN
FT                 SRSHMWGDIEVNSRGKLVENWMISNNLYCLNNSEEFTPTFIGHRGSSVIDL
FT                 TFVTEDILNKVKIEILDNETLSDHRPILISYNKLKRVITPTNHQPNNWFIN
FT                 PTKYKEFSIESKNILNEITEDLTPEICKDIITKTADKVFSRNNSNPYSTKI
FT                 VYWWNPKIRKLFKSVDRTKSKIRYFKYLKRPTSILAQKLVTIKKDLEKAIN
FT                 SSKKEKWERMINNLDKDPWGTGYKIASKKLKSPKTYDNNSISTEETIEAIK
FT                 NLFPVHPKNEWIPPDVNTDDIPQITKSEILESVKKLKPNKAPGPDNIPQIL
FT                 VKLFVTNNIEKIQIMINNLMKTTSFPAEWKRARLILIPKKRNNPNDKRKFR
FT                 PICILNAFSKIFEYILQERLLSCVTLSDNQYGFRKKRSTTDAMKRLIEIYD
FT                 NNRKVPYDKRNMICIIGIDIRNAFNSLRWKDIIRELHKQQVPDYLIAIMQN
FT                 YLQDRYVESGELTFETTAGSFQGSVIGPLLWNIVYDPIVKSKTIPHAEKLA
FT                 YADDMLKVLITKNKETLLQDSGNITKQTRKQLQKKGLTLEKTKTESLILEG
FT                 KKVDRREAKISVDGEVLGVGTSLRYLGFNLNKGLNMSHHLKIVCAKTKMVA
FT                 NHFRSIMPNIDGPTFLKRKLIVHAILSIIWYGVEIWANSCNKKNINLITAT
FT                 LRPLKRSLSSAYKTVSNNVLNVITDIPPTDLLIERKLRTTRKQEDRLEIEI
FT                 DINKRWNDRWTEEGLQNKDKWIHKILPSLQPWIERTHGDVDFYLTQFFSGH
FT                 GSFNSYLSRFKLVPSPLCPLCLSAPDTPEHTFFGCTHIGEDKKDLETKLHI
FT                 KISPNNVVKTMLESQENWNLVQSYITKTLKRKITLNNTTKHNHTSTPSVAA
FT                 GEKSPNRDDSGTIRADMQP"
XX
SQ   Sequence 7160 BP; 2991 A; 1544 C; 1155 G; 1470 T; 0 other;
     tttataaaca atattgattt tcatatcaat cgaattgtct cacctcgcgt tataacccga        60
     tagaggtttt gaatcctttt tcaagcccta gggcttgatt ttaagtgaaa tttcagtgta       120
     tagtggagtg gcctagtgtt gttgcgtaac aatagttgcc aatacggtca cccactcgca       180
     cggatttttc acttttgcgc atgcgcactt acagctaaat ccgacaacat tgatctgatc       240
     aaatcaaaca ctaagatgca atcacagatc aaaatctctt taccgcgcat gaccaaatcg       300
     agaatctaaa tcaaaggaac acctctaatc tccttactca atctacaact acatcgcgtc       360
     actctcgtcg ctaagcgaca cgaagagacg catcaccgcg ttgcaccgcg gccgtcacgt       420
     ccgcgtcgtc gtcgcgcgtc gccaccgtcg cacgccgcac cgcacagcac gccgcgccgc       480
     gccgtactct tcgcctgcgt tgtatacatc tttaattacc actacgcaaa ccatatgtta       540
     cattcacaca tagccgtgac gaaactcaaa tgaagaggtg cactgcacat ggagtgatat       600
     actgtaacat atgtaaatgc ttacaacata ataagacgga ttgtgactcc caactctgct       660
     tcgaaaacaa gatctacaat attaacatat caaaacaaca acaaagaagt acagaatgta       720
     acaaagaaag gaatcaagaa aaacagacgc aaatagagca ggaatcgaac caaaatccac       780
     aacaacaaaa tcaagaagaa atggaaacat caaaacctca aaaaagctcc tctgacttga       840
     cctctgactt aactccaaaa ggaaacagcc tggaacaaac gccaacagaa gatcccacca       900
     cctcccactc tacagatcaa gggaaaacaa tcatggacga aatgaaaaaa cttaccatcc       960
     taaaagaaga acacgaacaa gctattaaag tgattagaca aatgatatat gagattgaca      1020
     atggagggac attggaaatc agaattggaa acaaaatctt ttcaaaaagc aatgaagtga      1080
     gaacaaatct gatgaacaca aaaatgttca gagaagaaca acttaaacta acccaagaac      1140
     aattgaaaca ccttaaaaac gacccaaatc aaaccaccac agataaacaa accaccaaca      1200
     tcagaaaact cgacaaagaa gaagaaaata tcaacttcga aattgttaac gaagtaaagc      1260
     gaagaagaat ggaaaccgct ggagataaat cagaagaaac cccaaactcc gaaacaacag      1320
     aagagaactc taatgataaa gataggaaag aagaaactaa cgtggaactc atggatactc      1380
     aaaatacaga aaccaaagaa gaacaaggct ctaaaagaag atgcaaaaac tacacatcaa      1440
     acaccagtga tgaagacgat ttgaacaaaa ccttttcaga tccagagatt acaactccat      1500
     ctcgtaaacg taaactcaaa agcaaaatcg agaaaaaacg aactccactt aaaaatacaa      1560
     gaaatactaa acctgacata agaacatcaa cacctacacc aactctaaca accaaaacca      1620
     aaccaacaca agatacatac caaacagatt cagaaatgga aatagaattc gaaaaaggaa      1680
     ccaaatatga ccaactcaac aaagaagatc aactcaacaa agaaaaagaa aaaggagata      1740
     aaaaacacct acaacaacaa caacaatctt cggagaataa taatgaacta ccaccagggg      1800
     ccttcaacac caaaatcaat ttcaactcca aaatcaattc caaaaccaac aaaactcaaa      1860
     atcaaccaaa agagaaaaca gacaagaaaa aagaagaaaa actgaataag aaaccgatag      1920
     aaaacaaaac atcaatctca aaagaaaatg aagataccaa gataaataga gaatcaccac      1980
     aaataataga gaaaatagag aactttctgg aaaatatgaa gaaaactgga gaaaaacaaa      2040
     tgcaaggaat catgaaagaa tacatgaata acataaataa agagataaac tcaaaaataa      2100
     atgatatctt agaaaataca tttgtctcta aacagataga acaatataaa aaagagctaa      2160
     atgacaaaga caaaacgatc aaaaatcaag aaaaagaaat cgaaaaacta aaagaagaaa      2220
     ataagaaact aaaagaaaaa cctcaaactg aaaacaacaa agaaatgaac aagaaaatag      2280
     acaaaatcta tgaaaacaac aacaaaatgt ttgacgcaat gaaaagcaca aacacagtac      2340
     taaaagaaaa agaagaacca tggaatgtac aactagggaa gaagatacgt aaagcgaaag      2400
     ataccatgaa ccctaacatg aagaaactac atatccctga aaccgatagg aattcattcg      2460
     ctaacatatt gaaaaaacaa aacatagatg tgaagattga ccaagttatc acaagcaaaa      2520
     atggagtgac actggcaata acggatcaaa aatcagcaga agagataaaa caaaaactag      2580
     atgaaaacaa atcgacttac agagaattag aaccgaagag aatatacaca tacaagataa      2640
     cgaatataga tgcatgtcta gacacagaag atataataca agacctatta aagaaaaact      2700
     tacatgaaag aggctggaaa agagaaaaac tggacgaaaa tcttaaacat gttgccacat      2760
     tcaaggtgac tgggagatat tcaaaagata atcttcaaac agttttcttt aacgcaacat      2820
     cagaattatc agaggacttc gataaaataa aacttgtcta cataggatct acaagatgta      2880
     aaatttatcc aacagtacta gtactaccat gtcgaaaatg cggttctcta tcacaccaaa      2940
     cacgattctg tgaaataaaa gaagacaaat acatatgtta caaatgtgga aattccaatc      3000
     ataagagcag tgaatgtaaa aacaaaatca aatgcataca ttgtgcagca gcgaagaaat      3060
     cagacacaaa tcacaccact ggaagccaat tttgcccatt tgtatatgca gaagcacaga      3120
     gaagaggtag aagactcatc tggaactcca cagaggacga aggagggata atactaccca      3180
     gcaatggaga atcgacagcc tgaaaactct gatacactcg aagaagtcta ctcatcaagt      3240
     gactccgaaa aatcaattgc taaatacata gacaataatc tgtttgggaa ttttatgtca      3300
     aaaatagaga aagcactcaa accccagaat tatctactat cagaacaaaa atcaaaaaat      3360
     ttcttcaaaa gaaacctccc tgagaatcgg agcaacttta aaacaaatca caatagacga      3420
     aaaacatcat cgaaaaactc ctctaacata atatcaacag acaatgaaga tcctgacgac      3480
     ccagactgga acccacaaga aggacacaaa ggaaatgccc tttctaaaat agaaaaagct      3540
     cttaaacccc gacaccttaa aacactcaaa caaagaaata cttctactaa tgtatcaaac      3600
     cgtttctcaa ttctcgatac ctcatctgaa gaagaaccaa cacaagaaac ccaaaaaatg      3660
     actcaaactc taattgacac ctacttgcag aaaactcaag aagatagtga cttatcagaa      3720
     aacatttcat cggcagaaca aatcaaattt ttcagaaaaa acaagactaa cttcaatacg      3780
     acctctacca accaagaact tgaaatattc gaacattcaa taactcaaga tactcacggc      3840
     ttcaacgcga tcctctgtaa caccaggaaa agggtcattt gcatgaacat aatagataat      3900
     ctagctacac acaaaaaagc tggaatagtg atgttcacgg aaccaaattc aaagaaaagc      3960
     cagacagaaa actactttga atctatagat aaaaaagtag ccataaaaac aactaaagac      4020
     ctgactggat caaccgaaaa ctggaacagc tacagaaatt tcaacacctt tcaatggaat      4080
     gggatcacaa ttatttgctg ctatctcaac acggaagaaa aagattctga attagaagga      4140
     tccttagacg aaatagaatc aatcatcaag aaacatcaga atcaaaaagt tatcatcaca      4200
     ggcgacttca atagcaggtc tcatatgtgg ggcgacatag aagtaaactc tcgcggaaaa      4260
     ctcgtagaaa actggatgat atcaaacaac ttatactgtc tgaacaatag cgaagaattc      4320
     acccccacct ttatcggtca tcggggctcc tccgttattg acttgacttt tgtcaccgaa      4380
     gacatcctaa ataaagttaa gatagaaatt ttggacaatg aaaccttaag tgaccatcgc      4440
     ccgatactaa tctcctacaa caaattgaaa agagttataa cacctaccaa ccaccaaccg      4500
     aataattggt ttattaatcc tactaaatac aaggagttct ccatagaatc aaagaatatc      4560
     ctaaacgaga tcaccgaaga cttaactcca gaaatctgca aggacattat aaccaaaaca      4620
     gcagacaagg ttttctcccg caataattcc aacccctaca gcaccaaaat tgtttactgg      4680
     tggaacccta agatcagaaa acttttcaaa tccgtggata gaactaaaag taaaatcaga      4740
     tacttcaaat accttaaaag acctacttca atcttagctc aaaaattagt cacgatcaaa      4800
     aaagacctag aaaaagctat taactcatct aagaaagaaa aatgggaaag aatgatcaac      4860
     aaccttgaca aggacccatg gggcactgga tacaagattg ctagcaagaa actcaaaagt      4920
     cctaaaacct atgataacaa ctcaatatca acagaggaaa ccatcgaagc aataaagaat      4980
     cttttcccgg tacacccaaa aaatgaatgg atcccgccag atgttaacac cgacgatata      5040
     cctcagatca caaaatccga aatcctagaa tcagtgaaaa aactaaagcc aaataaagca      5100
     ccgggacctg acaacattcc ccaaatctta gtaaagctct tcgtaacaaa caacatcgaa      5160
     aagattcaga taatgatcaa caatttgatg aaaacaacct ccttcccagc agaatggaaa      5220
     agagctaggc tcattcttat tccaaagaaa cgcaacaacc ctaatgacaa gaggaagttt      5280
     agaccaatat gcatcctaaa tgctttttca aagatttttg aatatatact ccaagaacga      5340
     ctactaagct gcgtaaccct ttcagataac caatatggct ttaggaaaaa gagatcaacc      5400
     acggacgcca tgaaaagatt aatagaaatc tacgacaata atagaaaagt gccttatgat      5460
     aaacgtaaca tgatctgtat tatcggtata gatatccgta atgccttcaa cagtcttaga      5520
     tggaaggaca ttataaggga actacacaaa caacaagtac cagactacct aattgcaata      5580
     atgcaaaact acctccaaga tcgctacgtt gaatccggag aattaacctt cgaaacgaca      5640
     gccggtagct tccagggtag cgtgataggt cccttattgt ggaatatcgt gtatgaccct      5700
     atagttaaaa gcaaaaccat cccgcatgca gagaagttgg cctatgccga cgacatgcta      5760
     aaagtcctta taactaaaaa caaagaaaca ttactacaag acagtggtaa cattacgaaa      5820
     caaacaagaa aacaacttca gaaaaaggga ctcaccttag aaaaaaccaa gactgaatct      5880
     ctgatactgg aaggaaaaaa ggttgataga agggaagcga agatatcggt ggacggagaa      5940
     gttttgggtg ttgggacatc attgaggtac cttggtttca atcttaacaa gggcctcaat      6000
     atgtcccatc atctcaaaat cgtctgcgca aaaacaaaga tggtagccaa tcatttcaga      6060
     tcgatcatgc caaatataga cggtccgaca ttccttaaaa ggaaattgat cgtgcacgcc      6120
     atcttatcca tcatttggta cggtgtcgaa atttgggcca actcctgcaa caaaaagaac      6180
     ataaatctta ttacagcaac tctaagaccc ctaaaaagaa gcctcagctc tgcctataaa      6240
     acggttagca ataatgtact taacgtaata acagatatac cccccaccga cttgctaatt      6300
     gaaagaaaac tgagaacaac cagaaaacaa gaagacagac tggaaataga aattgacata      6360
     aacaagcgct ggaacgacag atggacagaa gaaggactcc agaataaaga caaatggata      6420
     cacaagatac ttccttcctt acaaccttgg attgagagga cacacggcga tgtcgatttc      6480
     tacctcactc agttcttttc tggacatggc tcctttaact cgtacctttc cagatttaaa      6540
     cttgtcccct cccctttgtg ccccctatgc ctgtctgccc cggatactcc ggagcatact      6600
     ttcttcggct gcacacacat tggagaggac aaaaaggact tggaaacaaa actacacatt      6660
     aagatctctc caaacaacgt agttaaaacc atgctggaat cccaagaaaa ctggaatcta      6720
     gtacaaagtt acataaccaa aactttgaaa agaaagataa ctttaaataa caccacaaaa      6780
     cacaaccaca cctcaacacc aagtgttgca gccggagaaa aatcccccaa tagggatgat      6840
     tccggcacta tccgggcaga catgcagccg tgagtttggt ttagttggtc ggctcgacct      6900
     cggtccccga tctccctagc cagctcctga tcagagcatt ttttctaact aaaagagcta      6960
     aaccaacata tgatagttta accatccaga caatcatctg gccgaaaccc accccatgtt      7020
     ggggtggttg cgcgaaacag ttgagagtcg aaacccctga ctatgtataa cacagccagt      7080
     ggaataagat gcttaaactg tcatatcttc gagaagattc gccacttttt ctcccggtag      7140
     aactacaaaa aaaaaaaaac                                                  7160
//
ID   R1-9_DTa    repbase;    DNA;    INV; 4890 BP.
XX
AC   .
XX
DT   30-AUG-2021 (Rel. 26.10, Created)
DT   30-AUG-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome: a
DE   sample sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4890
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5905-5905 (2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence, flanked by 15-bp TSD.
XX
SQ   Sequence 4890 BP; 1341 A; 1341 C; 1359 G; 849 T; 0 other;
     aaggcaaata caggcagttt tccaagtagc tctcccgaaa atcttcttca gcatcaagaa        60
     acacagctgt aggaaaggaa aactactgtg ctcgccaaac ttggtactca cgctaccaac       120
     acagggtgag atcctccaaa acaacagccg ccgagatcca aaaagtcgcc tttagcatct       180
     ctctgctggt caggggaggc agggccaggg ggtacatccc gcgctttccg cttctcgcct       240
     ctgttttggt ttttcctcct tcctattgct tttttcccac gctttcccaa gttccgcaaa       300
     cgatcgcagc tgatcagtgt tgcgaaaccc ccgggcagag cccagctgat caaggctagc       360
     gctgccaccc cgcccacttg cggtcagtgc tgccaatcag ccagtgctgc cattttggcc       420
     agggctgcca tttcggagat acccgtagtt gcactgcttg gtgtcgcaga caagagcttc       480
     tgtcagcgcc ggcactgctt cacaacaaag cccgccaagg cgaattcggt ttgaattttc       540
     gatggtagga caatagaggt aaagacaaag gatcgcactg tcacccaacc ccaccgctag       600
     gcggcctcgc caaaaaaagg gggctctggg aacaggatag gggcggtaaa acccccatcg       660
     agcgccggaa ggaaatctct cggccagcaa gggagttcta ccaaaatatt caccgaaact       720
     caccgattag cagccgacgg tagcggcgat cgctaagagg cctaccgatg tacgccgctg       780
     cggaagtcgg gagcctcacg gggttcgaca aacgacccaa ggactgtcga acgcccccac       840
     cttcagcgcc gccggtcctg gctggggaaa tgtttccttt cgagcggacc ggagaacgcg       900
     agaccccaaa aaggagcagg gtgttcacga gccctacaag cccagagaat caggccaaga       960
     agaccaagcg ccaaaaaacc caaatggagc tggtgaacga cttggaaagc cttatagacg      1020
     gattgatagc tgcatgcatc gagaagaagc cggcggtgcg ccacataaac acatactctg      1080
     atgagcataa aggagatcca gctagagctc agcgagcaag ttgagaaatg ggcgatggtg      1140
     aaaacccgca cgtctacgca gacaacgcca ggcctagctt cctacagcca agctgccaga      1200
     gaggcaaaca cccgcgggcc agagccagga aggtccctca cggggaagag caagccgagc      1260
     aagagggtcc accctgacgc ccttatcatc aagggaacag aagggcactc ttacagcgaa      1320
     atcctcaacc tggtaacgag gagagaggac aacaagctgg aagacgagcg taagaacgtt      1380
     cgccggatca aacgcgcaga aaagggagat ctcctcctgg aactggatgg cgcatcaagg      1440
     gaggacaccc agtccatcaa ggaaagctta ggcaacgtcc ttggagacct ggcttgcgtc      1500
     cggacagttg tggaagaggc ccacgttgaa gtacgcgact tagacgacct gaccaccaag      1560
     aaggaggtag cagcagccgt gcacgcccta acgggccacc aggtggacgt ttcaagcgtc      1620
     aaagcgcttc gcccggctta cgcgagcaca aaaatggcgg tgctcgcact ttcgccgcaa      1680
     atagcagcaa aactcctcgc agaagggagg gtaaaggtgg gctggtcgaa ctgccgggtc      1740
     cgagaaaggg catccgaacg gaggtgctac aagtgccttg agtttcggca tatagcgctc      1800
     cggcgcaaga gcggagtaga ccgcagcgac tgctgcctga agtgcgggca atccgggcat      1860
     aaggtcgcag actgctcgcg ggaaccaaaa tgctaagaag gcagacgtga agcacatagc      1920
     gggcagcatc ccgaccccaa caagtgcgcg tcggatccta cttcatccgg gctatggtga      1980
     acgagctatt catatatagc tgctatctgc caccacgcct caccatcgcg gaattgacat      2040
     cagttctgga cgaattggtg gatgatgcac ggggaaaagg gaatgtggtc atcgccgggg      2100
     acttcaatgc atgggccgag gagtggggat cggtccacac gaacgccaga gggaaaactc      2160
     tgctcgaaac cttcgcgtca ctcgatgtag ccctattaaa cactggttcg gaacacactt      2220
     ttagaagagg ctcagccggc tcagtcgtgg acctcacctt ctgcagcagc tcgctttttc      2280
     aacaagtccg atggcgcctt ggagaagtct actctgcgag cgaccataag gccataatct      2340
     tggaaataat gcgaaatcga ccggcggctg cagccccagc acacagccgc ttcaatccaa      2400
     agacgctcca ggaggacgcg ttccacagag catggggaga cccgggtatg ggcgagcacg      2460
     cggagagcag cgctgagaag ctaatgggag ccatggcgac ggcatgcaga gccagcatga      2520
     gggaaacgag gagtcaccac cgtaacctag aaccggtcta ctggtggtca ggagagatcg      2580
     cagcagcccg cagcgattgt ctgcgtgcga gaagactgca tcagagggcg agaggtcgca      2640
     taaaccttga gctcaggcgg caggagtacg ccgaaaaccg cagaatatta aagagactca      2700
     ttaagcagtc aaagaggaaa tgcttcctgg aactgtgcga cgcagccgac caggatccct      2760
     ggggttcagc ctacaaagtg gtggttaaaa agatgagcca ggcaaagccc cttggcccag      2820
     gagaagccaa cagaacaagg gaaatagtac aacacctgtt tccaacagtg cgtccagctc      2880
     cacagcgcga acaggtagca ctaccagcta caccgccgag tatcgtccag ccggatgaaa      2940
     tacggaagtt agccagggac ttgcccctag gaaaggctcc aggtccggac ggcatcccgg      3000
     acagcgcagt aaagctggct atgctcgagc accccgaagc attcgctgac gcctttaacc      3060
     tttgcctctg ggaaaacacc ttcccgaagc ggtggaagat tcagaagctg gtcctgctac      3120
     ccaagccgaa caagccacca gagaacccgt cgtcgtacag gccaatatgc ctgatcgacc      3180
     atgtaggcaa ggcacttgaa cggtgcatca gcaacagact gcaagaagcc atttccgcag      3240
     ccggggacct gtcacccatg cagttcggct ttgggaaggc gagatcaacg gtggacgcaa      3300
     tctcgacagt gaaagaaatt gcttcgaagg caatagaagg cacaagatgg cggagaggcg      3360
     gtaaggagta ctgcctagtc gtgaccctgg acgttagaaa tgccttcaat tcggcgcgct      3420
     gggatgctac actggaagca atccggcagc taggcgtacc agagccccta gtaggcatcg      3480
     tacagtccta cttcagcgac cgcaccctac tctacgacac ggatagaggg acaatggagc      3540
     accagatcac ctgtggagta cctcaaggat ccgtccttgg accgctgctc tggaatgcga      3600
     tgtacgacgg agttctaagg ttggcactgc cagggagaac gagcgtggta ggctttgcgg      3660
     accacatagc agtcgtaatc gtggccaaaa ccatcccgga agcggagcaa ctcggaaacg      3720
     gagcagtggc atctatcgaa gagtggctct cttcggttgg cctcagcata gcgcaccaca      3780
     aaaccgaggc ggtcctcata tccagctgta aggtggtcga gacagtgagc atccaagttg      3840
     gaggctccta tatacgctta gcaagagcaa tacgctacct gggagtcata atagacacga      3900
     gacagtcatt cagggagcac ctgttcgaag cgaacaaaaa ggccgccaac gtcgctagag      3960
     ctctggcgcg tataatgctc aacaccagag gaccaaaaca agggcgccga ctccttctgc      4020
     agtcggtaac tcggtcaaca atgctatatg ccgcccctat atgggccgaa gctattagca      4080
     cggagtcata cataaagggc ctggaatcca cctacaggct atgcgctttg agagtctgct      4140
     ccggattccg cacggtatca gatgacgcag cccttgtgat ctccggaatg gtccccatag      4200
     accttctggc aatcgaggct agggatattc acgaagaagt caaggcgctt ggaatgcgat      4260
     gcactccccc acagagacga gacatcaaag ccagggcgag ggaacggagc caaaaatatg      4320
     gcaggctcgc tggcaacagt ctacaaaagg acgctggacc taccaggtca tacccgacgt      4380
     taagcggtgg attgaaagac caaaaggaga agtaaacttc tggctgacgc agatcctaag      4440
     cggacacgga tgcttcagga gctacctgac cagatttggc cacgacgacg accacagatg      4500
     cccccaatgt ggcgtagagg agaccgccga gcatgtgatc ttcacctgcc cacggtttga      4560
     gcgcaacagg gaagaattct taggcgagac tagagaccct gctgctgggc tcagatgaac      4620
     aactttgccg cggtagtcat gaagacccag cggaaagtag agagaacgcg agacgaagct      4680
     cgacgaggga cctcgagatg agcctcagtg taaatcctga ccctgcgaag caaagccacg      4740
     cggtagtcca gcagggttat caggaacaaa attcttaact attctatttc ttggtctatt      4800
     ttatatattg acaaactctg tacacaccac ccccacagct ctataaaccc ttccccccat      4860
     aataaacaaa ctgattaaaa aaaaaaaaaa                                       4890
//
ID   R1-9_DWi    repbase;    DNA;    INV; 5108 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-9_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5108
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1970-1970 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with ~99% identity.
CC   Several copies are flanked by (CA)n microsatellites, like Waldo
CC   elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           554..1975
FT                 /product="R1-9_DWi_1p"
FT                 /translation="MDKFVASLDHHSQPESDPLGNMSEEAVFGRRPLIGIS
FT                 PPPVHGNAAKTPLACAQAVLNSPDVTSLAPSPPVISRIAELDELGVLVWQL
FT                 DHLFNKRDDNKKPVRHINMSTKQAIVRLKELQELLCQKALAGMFQKPRDVQ
FT                 ERNTQTSPAAILLGKQTAEPERRDTPKRPREDAATQRKTPPKKKRGAPQFH
FT                 EERVASSQHADSNKPEDNSADWQQVTVRRAKRTPAPRQKLPRHRSDAILIA
FT                 NKGSLTYSEMLKIVTRSEDENLKAIGANVKKVRRTAKGDLLLEIEKPMGNN
FT                 LQQMSVDIGAALGSQFEAKPLTEEIRLDIKDLDEEVTRDDIISAFWAERQI
FT                 QIQPQSIKSLRPMYSGYQRATVSVPALTAKEMLKVSKIKVRWNVCPISINN
FT                 APKRCLRCLEYGHIASKCSSKIDRTGLCLKCGKSGHKISECVNSPSCCLCI
FT                 ASGEQNIGHIAGSQKCVHGPRGGISSRHD"
FT   CDS           1941..4943
FT                 /product="R1-9_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAQEEGFRLAMIRLIQINLNHCEAAQDLLVQTVRDLR
FT                 TDIAIISEPYRNLSSSQWVQNNSGKSAIWSCGPTPAQVQSPESFNGFVIAK
FT                 VSNYWIFSCYLPPSYSLGEFSAVIDELADQIRSHRPAIVAGDFNAWASEWG
FT                 SASTNARGQTLLEAFATLDLALLNTGEEYTFQRGNIGSTIDLTFVSNALCP
FT                 YARWEVSDAYMASDHKAILCTIEGRRRYDRPTARPQRYNTKRMDMQNFTST
FT                 LAQNVNTATSARGLFEWLRNACESSMPRKNTCPREHIPTYWWNDEIANLRK
FT                 ECHIARRRHQRNRVSDDCETLRIEFEQKRRDLKLAIRRSKRRCFNDLLVEA
FT                 ENDVWGRPYKIVMKRLKTNQRTEPHSVDDMDRIVGELFPPQPPTNSPAAPM
FT                 DVETIPPISVRELLAAVARTRVRSSPGLDCIPNEALKIAAYQHPDIFASVF
FT                 NKCINDGVFPDLYKRQKLVLLPKPRKQAGEATAYRPICLLDTTGKVLERIL
FT                 ADRLDEALHSANALSDNQFGFRKGRSTIDAIQKVVSIARNAIAGDRWKGGA
FT                 KKYCIIATLDVKNAFNSARWPCILDALRNFGIPHYLWKVISSYFSNRSLHA
FT                 DTLEGEKIYNITGGVPQGSVLGPLLWNAMYNGVLNLELPAGVEIVGFADDV
FT                 AVVSVAKNLSEVETMCSNGIARVQQWLATTGLLLAENKTEAVLVSSRKKVE
FT                 TASIQVGGTQIKTKKAIKYLGVLIDSRLNFKDHLSATAKKARITCSALSRL
FT                 MPNTRGPSQSRKTLWHGVIKATMLYGAPVWAEAMSTKSYARELDSIFRISA
FT                 LRVCCGFRTISGIAAMVLASAIPVGILADESKRLFWALKEPNLVPTEKELL
FT                 RVQAREISIARWQSLWDMSQKGRWTHRLIPSLKDWLARAHGEVNFFSTQLL
FT                 SGHGCFRGYLHRFRHASSPECAWCANGEDETAEHVLFKCGRFETEREHLEA
FT                 ELGEQITVSNLVPMMIRRRENWEAFNEFAAIAMTELRRVEQLSRVE"
XX
SQ   Sequence 5108 BP; 1521 A; 1290 C; 1247 G; 1048 T; 2 other;
     ccttgtacct tgcgagagaa cgtatctttg tccgcgggtg ctccgttgtt aactccaaat        60
     tcgggcatac aaaaggcctg tagatcaaaa aattttagcc aaggaggacc tctgcaaact       120
     tggttacata ccacgcttct gggattcgtc ggccgcaacc actgccgatc ctactccagt       180
     ttataaccca gccggttggc ccactgtggc ggacgggggc gaggggagga gccagtcacc       240
     tctccattta cttttmccgc ctctcagtat tggccccgtt ttttcgtggt gtgggtgaga       300
     atttttatcc agttttccag ttttmtgcga attttcattg ttgttgcaca atttcttcct       360
     cttcttcaca ccggcacaaa catctgatcg ccccagtgtt gaataacgaa gaaagacaag       420
     gggagcccct agccataaaa tcggcaggtg gcgcctctga ttaaccgccc ggatttgaat       480
     tcaaattcaa aattgtaacc attaccgcaa ttttgtgttt ggatactgcc tccgaactgg       540
     gtttcttgaa ccaatggata aatttgtggc atcgttggat caccattccc agccagagag       600
     tgatccattg ggcaacatga gcgaggaagc cgtatttggc cgacgtccgt tgatcggaat       660
     atctcctcct ccagtacatg gcaacgcagc caaaacaccc ttagcgtgtg cacaagcagt       720
     gcttaacagc ccagacgtaa cgtctttagc tcccagtccc ccagtgatct ctcgcatagc       780
     tgagctggac gaacttggcg tgttagtatg gcagttagat cacttgttta acaagcggga       840
     cgacaacaaa aagccagtgc gacatatcaa tatgagcaca aaacaagcca tagtaaggct       900
     gaaagaactc caagagttgc tctgccagaa agcgttggcg ggtatgttcc aaaaacccag       960
     ggatgttcag gaaaggaata cgcaaacctc tccagcggca atactcctgg gcaagcaaac      1020
     agcagagcca gagcgcagag acacaccaaa acgcccacga gaggacgcgg caacgcaacg      1080
     aaagacgccg ccaaagaaaa agcgaggagc ccctcagttt catgaagagc gggtagccag      1140
     ctcccaacat gccgattcca acaagccaga ggataacagt gcagactggc agcaagtcac      1200
     ggtcagaagg gccaaacgga cgcccgcgcc aaggcaaaaa ctaccaagac acaggtcaga      1260
     cgctattcta atagcaaaca agggcagcct aacgtacagc gaaatgctaa aaattgtcac      1320
     tcgtagcgag gatgagaatc taaaggctat cggagcgaac gtaaaaaagg tacgacgcac      1380
     cgcaaaaggc gatctcttgc ttgagataga aaaacccatg ggtaacaatc tccagcaaat      1440
     gagcgtagac atcggcgcgg cgcttggaag ccagtttgag gccaaacccc taactgagga      1500
     gatcagactc gatatcaagg atctcgacga ggaggtaacc agagacgaca ttatatcggc      1560
     attttgggca gaacgccaga ttcaaataca acctcagtca ataaaaagcc tccgcccaat      1620
     gtactcaggc taccagcggg ccacagtgag cgtcccagca ttgacagcca aggaaatgct      1680
     caaagtcagc aaaattaaag ttcgctggaa cgtttgccca attagcatca ataacgctcc      1740
     aaaaagatgc ctcagatgcc tagagtacgg ccatattgcg tcgaaatgct ccagcaaaat      1800
     cgacagaacg ggactctgtc taaagtgcgg caaaagcggg cacaaaataa gtgagtgcgt      1860
     caacagcccc tcatgctgtc tatgtatcgc cagcggcgag cagaacatcg gccacatagc      1920
     aggcagccag aaatgtgttc atggcccaag aggagggatt tcgtctcgcc atgattagat      1980
     taatccaaat aaacctcaat cactgcgagg cggcgcagga cttactagtc caaaccgtca      2040
     gagacctacg cacagacatt gccatcataa gcgagcctta tagaaactta tcgtcttccc      2100
     aatgggtcca aaacaactct ggaaagtctg cgatttggtc gtgcgggcct acaccggcac      2160
     aagtacaatc tccagagtct ttcaatggtt ttgtgatagc caaagtatcc aattactgga      2220
     tcttcagctg ctacctccct ccctcttata gcctcggaga gtttagcgcc gtgatagacg      2280
     aattggcaga ccagattcgc agccacaggc cggcaattgt tgccggagat tttaacgcct      2340
     gggcatcaga atggggtagt gcatcaacca atgcaagagg ccaaactcta ctagaagctt      2400
     ttgccacact tgatctggca cttctaaaca caggcgagga atacacattt caacggggca      2460
     atatcggctc gacgattgac cttacttttg taagcaatgc actttgccct tacgcacggt      2520
     gggaagtgag cgatgcctac atggccagtg atcacaaggc aatcctatgc actatcgagg      2580
     gccggcgtag atacgacaga ccaacagcga gaccccagcg gtacaacaca aaacgcatgg      2640
     acatgcaaaa cttcaccagc acactagctc agaatgtcaa caccgccaca tcggcaagag      2700
     gactattcga atggctgcgt aacgcatgcg agtccagcat gccgcgtaaa aatacctgcc      2760
     caagggaaca cataccgaca tactggtgga atgatgagat cgccaacctt cgcaaggaat      2820
     gtcatatagc cagaaggaga caccaacgga atcgagttag cgatgattgc gaaactctcc      2880
     gcatagaatt cgagcagaag cgcagggacc tcaaactggc aattcgccgc agcaaaagga      2940
     gatgcttcaa tgaccttctt gtagaagcgg aaaacgatgt atggggcaga ccgtacaaaa      3000
     tcgtgatgaa gaggctaaaa accaaccaaa ggacagagcc ccactctgtt gatgacatgg      3060
     accgcatagt aggagaactt ttcccccccc agccacccac caatagtccc gcagcaccaa      3120
     tggatgtgga aactatacct ccaataagtg tacgggagtt actggcagct gttgcgcgaa      3180
     ccagagtcag gtcgtccccg ggcctcgatt gcatccccaa cgaagctcta aaaattgcgg      3240
     cgtaccagca tccggatata ttcgcgtctg tattcaacaa atgcattaat gacggagtct      3300
     tcccagatct gtacaagaga caaaagcttg tgctgctacc aaagccaaga aagcaagccg      3360
     gcgaagccac agcatacaga cctatatgcc ttctggacac gacaggcaaa gtgcttgaaa      3420
     gaatcctagc ggatagacta gatgaggcac tacattctgc caacgcactg tcggataacc      3480
     aatttggctt ccgaaagggg cgatctacta tcgacgctat ccaaaaagtg gtgagcatag      3540
     cacgcaatgc aatagccggt gatcgatgga aaggaggtgc caagaagtat tgcattatag      3600
     ccactttaga tgtgaaaaat gcatttaatt cggcaaggtg gccttgcatt ctagatgccc      3660
     tgcgaaattt cggcatacca cactatctat ggaaggtaat aagtagttac ttttccaata      3720
     gaagtctaca cgcagacaca cttgaaggag agaaaatata caacatcact ggaggtgtcc      3780
     cacagggttc ggttctggga cccctgcttt ggaatgctat gtacaacggc gtcctaaatt      3840
     tggaattgcc tgctggggtc gagattgtag gctttgctga tgacgtagcc gtagtaagtg      3900
     tggcaaaaaa tctgagcgaa gtagagacaa tgtgctcgaa cgggatcgct cgagtgcaac      3960
     aatggctggc tacaacgggc cttcttctgg ccgaaaataa aacagaagct gttcttgtaa      4020
     gcagtaggaa aaaggtggag acagcaagta tacaggtcgg cggcacgcag attaaaacaa      4080
     aaaaggcaat aaagtacctt ggagtactca tcgattcaag gctcaacttc aaagatcacc      4140
     tctcggcaac ggccaaaaag gccagaataa cttgctctgc cttatcacgc ttgatgccca      4200
     acacaagagg accaagccag agccgaaaaa cgctgtggca tggcgtaatc aaggcaacca      4260
     tgctttacgg cgcgcccgtt tgggcagaag caatgtccac aaaatcgtac gccagagaat      4320
     tggactcaat atttagaatc agcgcactaa gggtctgctg cggatttcgt acgatttcag      4380
     gtatcgcagc catggtacta gcaagcgcaa tcccagtcgg aatcctggcc gatgaatcca      4440
     aaagactctt ttgggcacta aaagagccaa acttagtgcc aaccgaaaaa gaattgctac      4500
     gggtccaggc gcgcgaaata agtatagcaa ggtggcaatc gctatgggat atgtcgcaaa      4560
     aaggcagatg gacccatcgg ctaatcccaa gcctaaaaga ctggttggcc agggcccatg      4620
     gagaagtcaa cttcttctcg acgcaacttc tgagcggtca cgggtgcttc cgtggctacc      4680
     tacaccggtt tagacacgca tcaagcccag agtgcgcatg gtgcgccaat ggagaagacg      4740
     agacggccga acatgtcctc ttcaagtgcg gacgcttcga aaccgagaga gaacacctcg      4800
     aggcggaact cggggagcaa atcacggtat ccaacttggt cccaatgatg attcgtcgca      4860
     gggaaaactg ggaggcattc aacgagttcg cggctatcgc catgactgag ctccgcagag      4920
     tggagcagct gagtcgagtc gaatgacctg agagcaggaa gcgggtggaa gcacgcctgt      4980
     gtgaagcaat accctcgctg gcagtaccac acaagctact tcccctcgca aacttttttc      5040
     caaatttcct ttccttcttt gtatatattt ctatcactta ataaatgaat taaaaaaaaa      5100
     aaaaaaaa                                                               5108
//
ID   R1-9_PPo    repbase;    DNA;    INV; 400 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1-9_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-400
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3140-3140 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 400 BP; 88 A; 87 C; 145 G; 80 T; 0 other;
     gtgtgagtgc ggtgaggtga ggaggatgct catcacgttc tgtgggagtg tcctcagtat        60
     gagacctgag aatgaaaatg atggagggat tcgcgacggg tccgatttat acggatcttg       120
     tcaacaacgg ggcgaacttg ctaggctgcg tgagttcgcg catcgatggc atcacgaaga       180
     tgcaggctag aataggcgct gggtggatgc ccgacggcga tggtgttcat gttcgtcatg       240
     cccattaggg ggagagtgac tcaacacaag gaacggacga aataacttgt agggagtcaa       300
     gaaggtgcgt gcggagccga aaccggccaa accgcgcgcc cctcccgcga ttcggcccgt       360
     atgacccgag ggtcggtggg gccatgggtg gtggtgggct                             400
//
ID   R1-N1_CFl   repbase;    DNA;    INV; 6226 BP.
XX
AC   .
XX
DT   06-FEB-2014 (Rel. 19.04, Created)
DT   11-APR-2014 (Rel. 19.04, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   R1-N1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-6226
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Camponotus floridanus
RT   genome.";
RL   Repbase Reports 14(4), 1043-1043 (2014).
XX
DR   [2] (Consensus)
XX
CC   Likely non-autonomous non-LTR retrotransposon derived from a
CC   SART-like ancestor.
XX
FH   Key           Location/Qualifiers
FT   CDS           41..1210
FT                 /product="R1-N1_CFl_1p"
FT                 /translation="MNSSKNKPTTTSEEEREREAAEHCVCSESRSSSDRDL
FT                 DSVEAQRGSSAFISAERCLSGGALPTGGPSDPLVGGVAPEQEESTLVLDVR
FT                 ETQSLECVVDPADFPGCDPSCIEMDFDSLDESDISCAMTDQDAQDKTVPKP
FT                 KSRIAKRRRIVDSSDSQNEESKVESNVGTLRKLRPKKTRALAQSVDNVHXE
FT                 IVDKLAINELAHKTTDEIVPSASQEEQSTNMVSTXEAGSTLQSEIDTDGTL
FT                 KKKKMSKKRLSPIAPKIHPLIEVGSLRNLTPTNIAASAMDWIEDIELIRKR
FT                 SNLQGVMSRYVRERIEIVKDCFRIMQDYSLRPDNQDHLQIRNARLAADYAA
FT                 AQSEITQLKTEICELKKERNSFLNKKCTCEITRDLTETSGSKQMQIL"
FT   CDS           1269..2681
FT                 /product="R1-N1_CFl_2p"
FT                 /translation="MYKDKNTYDLTKSILDELVNIKNRISTLEDGKVTSRI
FT                 STSPATPPRKLQGEPGKPIIKKIEEXDPSRRVIIVPGPSAGTSVDVQDTLD
FT                 QNGAETSKSPTYSSILKMKTERKEENXKEKEKGKIKKTEKKKEEKSNIKDS
FT                 RKTAEEDKKWIETTSKDEDSDWKTVNKRRKRNKVKKGKENKNKTKXDTKSN
FT                 QSELDTDQAKDTNPKSASMVKTVIQQLQKKVPKTCAVVIKGNTENFSYADA
FT                 LIKLRNNIPLKEIGIDSTKVKKTAGGAVLIEIPGGNNKSAAEELRARAANL
FT                 LGEVASVTRPEVMGEIRIVGFDESVNASDIINNITKLGGCAEHEVKVTPIT
FT                 PMRNGLYMTWIKCPLAAAIKASKIGKVSLGWTVARLELQKMNTPRCFRCWY
FT                 PGHHQSVCRSGIDRSNSCFRCGDKSHKATRCTNEAKCVLCESEGKPSRHRW
FT                 APSXVVPQERKKDSTTGXEAGLSNKI"
XX
SQ   Sequence 6226 BP; 2050 A; 1188 C; 1450 G; 1524 T; 14 other;
     atagcaggcg aaccgtcgtt agccataaaa acatacaaca atgaattcct ctaaaaacaa        60
     acctactacg acgagcgagg aggagagaga gagagaggca gcagagcact gtgtctgcag       120
     tgagagtcgg agctcgagtg atcgagatct cgactctgta gaggcacagc gaggatcttc       180
     cgcgtttatt tcagcggaga gatgtttgtc ggggggtgcc ctccccacgg gggggcctag       240
     tgaccccctc gtgggggggg tggcccccga acaagaagag agcaccttgg tgctcgatgt       300
     aagagagacg caatcgttag aatgcgtcgt agatccagca gattttcctg gttgtgatcc       360
     ttcgtgcatt gagatggact ttgactctct tgatgagtct gatatttcgt gcgcaatgac       420
     ggatcaagat gcacaggata aaactgtacc taaacctaaa tctaggatmg ctaaacgacg       480
     acgcatcgtc gactcctcgg attctcaaaa tgaggagtct aaagtagagt ctaatgtagg       540
     cactctgcga aaattaaggc ccaagaaaac tagggctctt gcgcaatctg tagataatgt       600
     acataakgaa atagttgata agttagctat taatgagtta gctcataaga caactgatga       660
     aatagttcct tctgcctctc aggaagaaca gtccaccaat atggtctcca ctkgtgaggc       720
     aggcagtaca ctacagtcag aaattgatac cgatggtacc ctaaaaaaga agaaaatgag       780
     caagaaaagg ctatctccga tcgcaccgaa aatccatcct ttgatagagg tgggtagcct       840
     caggaatctt actcctacga atattgcagc gtctgccatg gactggatag aggatatcga       900
     attgataaga aagagaagca atctccaagg agttatgagt cgatacgtta gagaacgtat       960
     agaaatagtt aaagactgct tccgtattat gcaagattat tctctgagac ctgataatca      1020
     ggaccacttg caaattagga atgcaagact tgcggctgac tacgctgcgg cgcagagtga      1080
     aataacgcag cttaaaacag aaatctgcga acttaagaaa gagaggaatt cattcctaaa      1140
     taaaaagtgc acgtgcgaaa taacgcgtga cctaacggaa acgtctggct cgaagcaaat      1200
     gcaaatactg tagatactaa tactaaggat tacaatgata agaatattta caagatattt      1260
     acaaagatat gtacaaggat aaaaatactt atgatctaac kaaaagtatc ctagatgagc      1320
     tggtaaatat taagaataga attagtaccc tagaagacgg aaaggtaacg tctaggattt      1380
     ctacttcacc tgcaactcct cctcggaaac tacaaggtga gcctggaaag cctattatwa      1440
     agaaaataga ggagwtagac ccctcaagaa gggtcataat tgtacctggc cccagtgctg      1500
     gaacatctgt agatgtacaa gatactttgg atcagaatgg tgctgaaaca tctaagtcac      1560
     caacctacag tagtatcctg aaaatgaaaa ctgaaagaaa agaggaaaat awtaaggaga      1620
     aagaaaaagg aaaaataaag aagactgaga aaaagaagga agagaagagt aacataaaag      1680
     atagtaggaa aacagcagaa gaagataaaa aatggataga gacaaccagt aaagatgaag      1740
     actctgactg gaagactgta aataagagaa ggaaaagaaa taaagttaaa aaaggaaaag      1800
     aaaataaaaa taagacgaaa gwagatacta aatctaatca aagtgagctt gatacagatc      1860
     aagcaaagga cactaatcct aaatctgcct ctatggtaaa aacagtaatw cagcagctgc      1920
     agaagaaagt tcctaaaacg tgtgctgtag taataaaagg aaatactgaa aatttctctt      1980
     atgcagatgc tctgattaaa ctcagaaata atatcccgct gaaggaaatc ggaatagaca      2040
     gcacaaaagt gaaaaagaca gctggwggtg ctgtactaat agagatacct ggaggtaata      2100
     ataaatctgc cgccgaagag ttacgtgcac gtgcagccaa cttactagga gaagtagcgt      2160
     ctgttactag acccgaagta atgggtgaaa tccggattgt tggctttgac gaatcagtaa      2220
     atgcgtcaga tattattaat aatatcacaa agcttggtgg atgtgctgag catgaggtaa      2280
     aggttacacc catcacaccc atgcgtaacg ggttatacat gacatggatc aagtgtcctc      2340
     tagctgcagc tattaaagct tccaagatcg gtaaagtctc cttaggatgg actgttgccc      2400
     gcctggagct tcaaaaaatg aatacaccac ggtgcttcag atgttggtat ccaggacatc      2460
     atcaatctgt atgtagatct ggcatcgaca ggtcgaactc ctgtttcaga tgtggwgaca      2520
     aaagccataa ggcgactcgc tgcaccaatg aggcaaagtg tgtcctttgt gaaagtgaag      2580
     ggaagccctc tcgacatcga tgggctcctt ccgwtgtggt gcctcaggag cgcaaaaaag      2640
     atagtacaac cggakcggag gccggactct ctaataaaat ctaatgatga agagaatcmt      2700
     ccaatgcaat gtgaatagga gcaggcaggc acttgacctc ctgatgcaat atgtaataga      2760
     ggaagatatc gctatctgca taatctcaga aatgccctat cttagaaatc ctaatagtca      2820
     atttgcacta gatgaaagcg gtattgtagc cgtctactac cgaccagaaa tctgtaatgc      2880
     gttaatgata ctaaaagtaa aagtgatggt atcgtgatgg taaacatagg taatttatct      2940
     ataatatctt gctacctatc tccaaattct gatagaacgc aggccttgga atacttggat      3000
     tctctatcgg acatcttgga tttagcgcaa aatccagcaa ttgtagccgg tgatttaaac      3060
     tcaaagtccc ccttatgggg ctcagctgaa tataactggc gaggacggct gctagaggag      3120
     tggatcaacg agagagatct ctgtgtcacg aacacgggta caaatcccac ctgcgtacgc      3180
     ccccagggac gctcggtggt ggatattacc cacgacggcc tctttggctg cgcggtctca      3240
     ggctgggaag tactgaagac gtagctactc tctcgatcat gatacgtgca tttccgtatt      3300
     gattgtcagc ggagaagtaa tgtacatagt gtaaataata aaactagagc taggaataat      3360
     atcaatagtc tcccgagctg ggcatggaag actatgtgtg aagaagactt tgctacatct      3420
     ctaatctggc acaacgctga cgtacgagag aaaattaatg acgaggtcaa agtgtcgact      3480
     cggtctcctt ctatattaga aacatacttg cgaggcagca gacttcctgc caaaagaagg      3540
     agaagtgagg caaggcaaaa tccacatatt ggtggaacga gaaattgctt ctcttcgcac      3600
     gaacaagata aaggcacgcc gacgatggac caggtaccag aaaaagagaa acgctcagac      3660
     tttgatatgg ctacactaat aaatctagag atatttacaa gacggcaaaa gctaacctac      3720
     gttctggtat tagagagcta aatctaaggc ctggaatgac ctgatcactc attgacgaag      3780
     acccctgggg cctccctttc aagattgtca caggcaaact taggaaaagc tctccatctt      3840
     taacggagct gctagatcca gaagagagag agaatacctt gggcaaactc ttccctcctg      3900
     gccgtacaca tgatccggtg aggctatggc tgaatttttg gaaccaagag tgggatatct      3960
     ctgcatcaga agtagaatat gagctatgta gaagaccgct aaaaggtgcg actcccggac      4020
     ctgatggtat tccggataaa atcctaaaag tgttgccggt ctgttttata gagtccatag      4080
     ctctttatta taataggtgt cttcgtagtg gtgtctttcc cgagcctgga aagtcgcagg      4140
     ctcgtgctta taccgaaacc aggcactaaa tctgctctag gtatacctaa atctcgtccc      4200
     attgtatcct cgacgagctt gggaagactt ttgagagaat aatatgtaag cgtctaaata      4260
     gatggatgta cgagaatccg gtagcgcatt atcaccgaat cagtatggtt tcgtggaagg      4320
     caagtctaca atgacgcact ccgattcgtc acggaaaaat tgagagctca ttctcgaaca      4380
     actccgtaac agttgcagta agtttagaca tgagaatgct tcaattcgtt accatgggag      4440
     acgattaggg cagccctggc caaagaaatt cccgaatatt taagaaggat gattgactct      4500
     tatctcatca cagagtaata ttatatccaa cggaatcgga ttagagtctc gcaccatcca      4560
     atctggagtg ccgcaggggt ccgtctcgga cccttgctct ggaacatcgg gtatgatgcg      4620
     attcttcacg ggcaggagag agacactcct cggttatatg ttatgcggat gatactctca      4680
     tcctaacatc cgagaacata agagagacac tatcggaatc ctccctacaa gtgcatagga      4740
     tacttaatga tatacatagg ctaggactta aagttgcaac tagtaaaacg gaaattgttg      4800
     tcttctcacg aaagcgtaat gctgcaatcg aggacacttt catgataaac agagataaga      4860
     taaagatagc agatcgatga agtatttggg tgttcttttg gatcgcaaat taacattctc      4920
     tccgcacttt gactatgcca tcgcaaaaac ttcgagacgg caggagccct actagtctga      4980
     tgccaaactt aagaggcccc tgtgaggcga aaggaaactc tatagcaacg ttataacctc      5040
     tgtttattat acggagctcc ggtttggtct catatatata caaagataag aagtttataa      5100
     ctaaaatgga tcaaagctta agactaatct gtaatagagt catctgcgca tatcgtacgg      5160
     tatcgctgac gcagcatcgc tgttagctcg tattccccct gtcacactcc aggcggagtg      5220
     taggagacgc acttacgagc gccttagaga cttagttgga tggggggaat attcaccgag      5280
     aaatgctgcg gctattaaga aagaagaaca gctattacta tgcgacaatg gtacattaaa      5340
     ctaataatac gaataagtat ggtacaagaa cagtgaaagc aatcctacct gtcttccatg      5400
     aatggatcaa ccggaaacac ggatccttag aattccattt aacgcaaatc tgactggcca      5460
     tggtgctttg gcacatacct ggacaagatt cagaaagcgg attctccgct ctgtatggcg      5520
     tgtaggaaga catgtagact ccccagatca cacggttact acatgttcca gatgggagca      5580
     ggaaagaaac atcctacggc aatctattgg ttttgatttg gatcttccat caattataaa      5640
     aaatatgtac atctaaagaa tcttggaagg cagtgatagc cttctcaaaa aagtatgact      5700
     acaaaagaaa atgaagagag agcaagacag gcgcagagat cacgatctcg ttctctgtct      5760
     gtaagaactg atcctgacga tacttaaata ttatttacat atttacaata gagatgccct      5820
     atgggcaata taatgggagt attgtatgta tgtaatgtgt gtggtgtgta tagtgtaaat      5880
     atgttatgta tgtggagaga gtgtatgagt gagtgagtgg ggatgtaagg gtggtgcggt      5940
     gtgtgatgtg tatgaatgtg atgtatgaat gtgactgtac atatgtatat atatatattg      6000
     taataagtgt aaatagatgt gtaaatgtgt atatatagtc atgtatatat atacaagtat      6060
     gcatatcctt taagacttag taatgcagac atcgccccag tccatcctta gaattctgag      6120
     gtagttgaca gttacgtgtg aagtctgcgc tgaaacagaa gaaaagtgat aatgatgtac      6180
     tacattctga taaatcatta ttgctaaaaa tagatgcatg tatata                     6226
//
ID   R1-N1_SIn   repbase;    DNA;    INV; 4549 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   04-MAY-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   R1-N1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4549
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 483-483 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~85% identical to consensus. The sequence shows some similarity
CC   to R1-type non-LTR retrotransposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           563..3859
FT                 /product="R1-N1_SIn_1p"
FT                 /note="3 zinc finger motifs."
FT                 /translation="MTWAGKRKRSYRPGVNGHPRAGTGGLVSRAPPCRHRT
FT                 TGGRAECPQAPPTIGRLRRRVNTTLTRRSRRRVRSASGSSSDGIRARPCAE
FT                 RSGAVGLTRSTPSGGRDGMDAVVLREGDYEEGDPTRREVRVSSSEDEGGVE
FT                 PAQRVVAPAPXAGEGTVSLPGGRPGVEPADKAEAPVPPAGEPSGRSPGGRR
FT                 EADAGGPGPGCGARRSRSLSPGRLLGGRRXADAGQPGGGGGRHRSRSRSPI
FT                 RIRGGGRGSEGEPSSPDESPPGTLVDVDRPGEEEVSTSRGAMEPVAPPPEP
FT                 PEEVVVTPDIPGVPAESGTQRGRKRARGRPRLDGSGPFRSPSPLSDGADXE
FT                 DRLHGVPMEGFRARRLRANVIRDSSEDEEVSGGSDSRPRQRIKIPPTLFTP
FT                 EQRRELDREIGVISRSTTTDLAGLADGWLREVETVRTKCTKLGMHGALSGQ
FT                 LKKCTHLAREAVMTLAYRAMGRLGRDEGQDEVAAAVREEEIRSLRAEVAEL
FT                 RGQLGVARRALVLGSGPSAASRSDGGGSSRPPPIPAAVPVPDPSSFEERVL
FT                 GLLGQLSGSVGELEKRLARVEEGAVSASSLAGAGAKRVRGGRRGDRAPREE
FT                 PPVPEPLSGPADSPAPAPSTDGPSWATVVGRKEKRRAAAGGAPTKKSAPAP
FT                 APSKTGRGRSLPRPGVAGAGASAGAGAALPPPPPPGSQPGKKKKKKGPKGG
FT                 KPGGGPPSRAASAAPGAVGRRIPRSSVVAITVEPGCASYTDIMKRSRAAID
FT                 LRDILPQPELGLKFRVSQAGGVLLEIPGSESRPAAERLAAEMRRVAGGPGI
FT                 RITCPMRRVGVRVSGFLDSTEPEEVAAALAGAGACSAAEIKVGRVTRGRRG
FT                 MGSVIAQCPVAAAARLAKVGRVALGWAAARVEALKAPPQRCYRCLAQGHMQ
FT                 HRCPGYSDRSRCCFNCGGEGHTRAQCANQPFCPECASRNRAAGHRPGGPGC
FT                 PKIPPMPRRAGGASSLLPGSGEGGGDGGGAASVTAGRRRCPRRSGRWGRRT
FT                 GGGRGRRGGCVSRGRGPCRWGPIRGRRSAAGVHLGLVGVRGGAPAAQDARG
FT                 RRGRRLGRCQRVESRFRGEPPRGQGDSLTPPPPTPAEGAEGE"
XX
SQ   Sequence 4549 BP; 627 A; 1468 C; 1777 G; 668 T; 9 other;
     gccccgtagg ggtctggagt cgttccgggg cctcccgagg ctgcggaccg actccagata        60
     caggaattgg cgttcctgcg gttcccgagc tcgctagggg gtctgcggtc tctcgtaggc       120
     cgcagattca gggatttcag cgaccctggc gcccgagctg acggtatacc gtaatccgtc       180
     acgtgctgaa attacgtgcg ggacggaccg gtggcctggg cctcaccgcc cgggctgcga       240
     ggagtaaacc tctataaaaa atccaagggt ggcgtccgtg gcgcggggtg tcgctccgtg       300
     taacagcggg gcggtgcttc gtgtctcgga cgccaacgtm tttagttggt cggcagcgct       360
     gctgccgggg tgggggtgcc ggtccggggt ggtcccgggc gggtgcttgc gctcgtccgg       420
     ggcctccccg ggccgtctcc cccgccttgg tggatccgcc tgcccatgtt gcctcgggcc       480
     gatggtcccc ggacatcggc ctgagtaggc tccggggcga gggtggggtt cccctcgtta       540
     aacaagaccc caattatgga aaatgacatg ggcaggaaaa agaaaaagaa gttaccgccc       600
     aggggtgaac ggacacccca gggccggcac gggggggcta gtgtcccggg cccccccctg       660
     tcgtcatcga acgacgggcg gtcgagcgga gtgcccgcag gctccgccga ccatagggcg       720
     actgcggaga cgggtgaata cgaccctcac aagacgttct cggcgtcgcg ttcggagtgc       780
     ctccggaagc tcttcggacg gaattcgggc gcgaccatgc gccgagcggt caggagctgt       840
     gggcctgacg cgttcgacgc cgagtggcgg acgcgatggc atggacgccg tggtgctccg       900
     cgagggcgac tacgaggagg gtgatccgac tcggagggaa gttcgtgtct cctcctcgga       960
     ggacgagggc ggggttgagc cggctcaacg agtcgtggcc cccgccccgg ncgccgggga      1020
     ggggacggtc tcgctgcccg gcgggcggcc cggggtggag ccggccgata aggccgaggc      1080
     ccccgtgcct cccgctgggg agccttcggg ccggtcaccc ggcggacgcc gcgaggcgga      1140
     cgccggtgga ccgggccctg gttgcggggc gcgtcggtcg cgctccctgt ctccgggccg      1200
     gttgctcggc ggacgccgcg wggcggatgc cgggcagcct ggcgggggcg gggggcggca      1260
     tcggtcgcgc tcgcgctcgc cgatccgcat ccgcgggggt ggccggggga gcgagggtga      1320
     gcctagctca cccgatgagt ctcctccggg caccctcgtg gatgtggacc ggccagggga      1380
     ggaggaggtc tcgacctcca ggggcgcgat ggagccggtc gcccctccgc ctgagcctcc      1440
     ggaggaggtn gtggtcaccc cggatattcc gggcgtgccc gccgaatccg ggactcagcg      1500
     cgggaggaag cgggcgcgtg gccgtccccg gctcgatggg agcggacctt ttaggtctcc      1560
     gtctcccctc tcggacgggg cggacatnga ggaccgcctc cacggagtgc ccatggaggg      1620
     tttcagagca cggcggctca gagccaacgt gatccgagac tcttcggagg acgaagaagt      1680
     gtcggggggg tccgattcgc ggcctaggca gcgaatcaag atacccccga cactgtttac      1740
     tcccgagcag cgtcgcgagc tggatcggga gatcggcgtg atctcccgca gcacgacgac      1800
     cgacctggcc ggcttggccg acggttggct gcgggaggtg gagactgtcc ggacgaagtg      1860
     caccaagcta gggatgcatg gtgccttgtc cggacagcta aagaaatgca ctcatctcgc      1920
     ccgagaagcg gtgatgaccc tggcctatcg ggccatgggc cgcctcgggc gggatgaggg      1980
     acaggacgaa gtcgcggcag cggtgcgcga ggaggagatm agatccctcc gcgccgaggt      2040
     cgcggaacta cgggggcagc tgggggtggc gagacgagca ctcgtgctcg gatcgggacc      2100
     ctcggctgcg tcccggagcg atgggggggg ttcatcccgc cccccgccga tcccggcggc      2160
     tgtccctgtc cccgacccct cttctttcga ggagagggtg ctcgggctgc tggggcagct      2220
     gtcgggctcg gtgggggagt tggagaagcg cctggcgcgg gtcgaggagg gggctgtttc      2280
     ggcctcctcc ctggccggcg ccggggcgaa acgggtgaga gggggacgtc ggggggatcg      2340
     ggctccgcgg gaggagcccc ctgtccccga gcccctcagc ggccccgcgg actcgcctgc      2400
     tccggctccg tccacggacg gaccgagttg ggcgaccgtg gtgggccgca aagagaagag      2460
     gagggctgcg gcgggggggg cgccgacgaa gaagtcggct cccgcccccg cgccctcgaa      2520
     aaccggccgg gggcgctccc ttccgcggcc gggcgttgcc ggtgctggtg cctcggcggg      2580
     ggcgggcgcg gcattgccgc cccctcctcc tccggggtcg cagcccggca agaagaagaa      2640
     gaagaagggg ccgaaggggg gtaaacccgg gggggggccg ccgtctcggg cggcgtccgc      2700
     tgccccgggt gcggtgggga ggcggatccc gaggtcctcc gtggttgcga tcacggtgga      2760
     gccggggtgt gcctcctaca ccgacatcat gaagaggtcc agggcggcga tcgacctgag      2820
     ggacatcctc cctcagcccg aactgggcct caaattcagg gtgtctcagg ccgggggtgt      2880
     ccttttggag atccccggct cggagagccg gccggcggcg gagcgcctcg cggccgagat      2940
     gaggcgcgtg gctgggggcc cggggatccg gatcacctgc cctatgcgta gggtgggggt      3000
     ccgggtgtcc gggttcctcg actccaccga gccggaggag gtggcggcgg cgctggcagg      3060
     cgccggagcc tgcagcgccg ccgagatcaa agtcggcmga gttactcgcg gccgccgggg      3120
     catgggctct gtgatcgcac agtgcccggt cgcggcggct gcgaggctcg ccaaggtggg      3180
     gagagtggcc ctgggctggg cggctgcgcg cgtggaggcg cttaaggcgc ctccncagcg      3240
     ctgctaccgc tgcctggctc agggccatat gcagcaccgg tgtcccggtt actcagaccg      3300
     gtcccggtgc tgcttcaact gcggcgggga gggtcacact cgggctcagt gcgctaacca      3360
     gccgttctgt cccgagtgtg cctcccgcaa cagggcagcc ggccaccgtc cgggtggtcc      3420
     gggctgcccc aagatacccc ccatgccaag gagggctggg ggggcctcct ccctcctccc      3480
     cggatccggg gagggcggag gagatggagg tggagcggcc tccgtcaccg ccggacgccg      3540
     gcgctgcccg cggcgctcag gccgttgggg gcgacggacc ggcgggggcc gaggccgccg      3600
     aggggggtgc gtctcccgcg ggcggggtcc ctgtcgatgg ggccccatcc gcgggagacg      3660
     ctcggctgcc ggggtccacc tcggactcgt cggagtccgg ggaggagccc ccgccgccca      3720
     agacgcgcgc ggtcgacgag gccggcgcct cggacgctgt cagcgtgtcg agtcacgctt      3780
     ccggggagaa cctccccgtg gccagggtga ttctctcacc cctccccccc caactcccgc      3840
     agagggagcg gagggggagt aaggccacga gggaggagag gcctaaggga ggcgcgccca      3900
     gtgcgccctc cccggggccg cccgtcctcg gcaaggggaa gcggcgataa gtgccgcccc      3960
     tcgggtgccc gccccctagc tgcccctagc gctcggggga tgcgacggga cggggcccag      4020
     gctgatgggg cccggcgcta ggcgagatgt tctctcccct ggcgcccggc ccggccacgt      4080
     agagcgccgt ggacgggagg aggtggggcg ggcggcggcg accgctcgtc cctgggcgtg      4140
     gggctcgcac cggcgatatg tcgggagcgg ccccatggcc ctaaatgggc gcgggggtgc      4200
     gtgatgcctc gctccgcacc cccggggtcg ggctaggccc taccggccga cgtatctcgg      4260
     ctgggccagc aaagcccgac tcccaactcg acgaactggc gcgtcgggga gctccatgct      4320
     ccgacccccg gtggagggat gttggcgtat gccttagcaa tcccggtccc tccacgcamt      4380
     ggggtgagat gggctcggtg ggtttttagt gggtaggcgg gccgggcctc gccaactttc      4440
     tgccgcgcaa gcggtctgtg ccggcgaggg gtaccgcgtc ccgagtccca cactcccgtg      4500
     gtctagccaa cccggggtgc catgagcatt ttcccccgtt aaaaaaaaa                  4549
//
ID   R1A_DAn     repbase;    DNA;    INV; 5610 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   14-MAR-2012 (Rel. 17.03, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   ananassae.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1A_DAn.
XX
NM   R1A_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5610
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. ananassae contains two subfamilies of R1.
XX
FH   Key           Location/Qualifiers
FT   CDS           512..1987
FT                 /product="R1A_DAn_1p"
FT                 /translation="MSAMSAMSALSESELSASSRASSRASSAIGAARGRRR
FT                 GRKSKATSLSAPTQAKLLAATGADRPEPVGVLEELALSSLETPVMPATSAV
FT                 DASAATFAAPAVVAGVVADAAEAAAAVAAGAPAAVPERSAVSMRSLDCIIK
FT                 NGADGVMEEAASIKETFVSLVVESLMNPQQATALMRCISRYDGIVQALMVR
FT                 NAVLEESSKLRAAMPLPPPPVQMPSVPQAVVSRPPVGYASAYPSLPAPSAA
FT                 PVPAPRKPRDTWSAVVMSKDPKLSGKEVAEKVRREIAPSLGVRLHEVRGLA
FT                 RGGAIIRTPSSGEIKRVVASKKFGEIGLEVKPNAVQRPKLVVQDVATQIAP
FT                 EEFMAELYANNLREHIPEAEFRKAVHLDTKPWTVADGATVSVTLECEPKVL
FT                 DLLEGGRIYIKWFSYRCRALVRTYACHRCVGFNHKVAECKQKDNVCRQCGQ
FT                 SGHSARSCTNPVDCRNCRFYGHPSGHSMLSPSCPVYAAVLARVNSRH"
FT   CDS           1990..5055
FT                 /product="R1A_DAn_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MFRFIQANCGRGRAATLELAVRLRESGCLFALLQEPY
FT                 VGSGTSDVLPEGMRIYTDRRQKAAILVDHQDVICMPMEPLTTDYGVCVSVK
FT                 GSFGSIFLCSAYCQFDTELEPYLRYMDAVLLQASRTPAILGLDANAASPMW
FT                 FSKLPRNPEGHANYNRGELLSEWMLENGAVALNQPSPVFTFDTYRARSDID
FT                 VTIANDAASMWATFEWRVDEWELSDHNIITVVVTPTTTRAVESLAPVPSWN
FT                 ISNARWQLFEQEMVSRAADIPEDFSQSPLDQQVSTLRCMVHDACDLAIGRR
FT                 TPRSPRRRKPGWWTANLNTAKREVRRLRRRLQNARRRGDDDAAELIVVALR
FT                 QASDDYKKLILRAKEDSWRRFVGENAHDPWGRVYKICRGRRKCTEIGCLRV
FT                 DGELVTDWGDCARVLLRNFFPVAESDAPIAGAEEVPPALEEVEVDACVARL
FT                 KSRRSPGMDGINGTICKAVWRAIPQYLTALYSRCIQSGYFPREWKCPRVVA
FT                 LLKGPDKDRCEPSSYRGICLLPVFGKVLEAIMVDRVREVLPEGCRWQFGFR
FT                 QGRCVDDAWRHVKSSVAASPARYVLGIFVDFKGAFDNVEWSAALRRLADLG
FT                 CRELSLWQSFFSDRRAVIRSSSGTVSVPVTRGCPQGSISGPFIWDLLMDVL
FT                 LRRLQPYCAFSAYADDLLLLVEGNSRAVLEDKGAQLMSIVEAWGTEIGVTI
FT                 STSKTVIMLLKGALARTPLVRSAGANLPYVRSCRYLGITVSERMNFFMHIA
FT                 SLRQRMTGVVQALARVLRVDWGFSPRARRTIYAGLMVPCALFGASVWYVVT
FT                 TRQVVARRRLLACQRLILLGCLPVCRTVSTLALQVLAGAPPLDLAAMKIAV
FT                 KYKLKRGYPLEGDDWLYGEDLSGLSWTQRVSRVDECLLSDWQSRWDDGDSP
FT                 GRVTHKFIPDAGFVYRNPDFGFSMRAGFLLTGHGSFNAFLHRRALSDTAAC
FT                 SCGDPNEDWEHILCACPLYADLRDLDGLGLQHVGGTWTFGRILESGDRTRR
FT                 LTEFAEEVFRRRRGLQ"
XX
SQ   Sequence 5610 BP; 1138 A; 1444 C; 1746 G; 1282 T; 0 other;
     cggacgtgtt ttggagtgct ccgtaattaa agtcattttt ctccggtaat tcggtgtcgc        60
     agacgtttga atttagtgtt aaaattcgcg tattaattac gcgaatcgaa cagtgctatt       120
     ttctcgtcgg gaaattaagt ttttctattg aaaaacagtg ttttcgtttt tgcacgtgtt       180
     ggcacgtggt ggaaattttc cacagataaa gctcggtgag tcttctggtg tgagcttcag       240
     tgcaaaggtg tgtgtgagag tactcaagag agagcttgag agagagcttt gagggtgctc       300
     tcgcccgtgc tttttgctga gcttacgcga gctttgggag tgtgctttct tgtgcaagct       360
     ttggtgcgtg cttttgcgcg cgctttagta aacacttgga gcatactttt gggctgcctt       420
     tttatttgca tatttttgtt gcatattttt ggggccccca ttttcagcac agctccacta       480
     ggcggcgcca cttgcccccg tagagggcga catgagcgcc atgagcgcta tgagtgcgtt       540
     gtcggagagc gagctctccg caagcagccg ggcaagcagt cgcgcaagta gtgcgattgg       600
     tgctgcacgg ggacgccgtc gaggacgcaa gtccaaggcg acgagcctct cggcgccaac       660
     gcaggccaag ttgttggccg ctactggagc ggacagaccg gagccagttg gggtgttgga       720
     ggagttggcg ctctcctcgt tggagacgcc ggtgatgcca gctacctcag ctgttgacgc       780
     ctccgccgct acctttgctg cccccgctgt tgttgctgga gttgttgctg atgctgctga       840
     ggcagccgcc gctgtcgccg ctggtgcccc cgctgccgtc ccggagcgat ctgccgtctc       900
     gatgcgcagt ctcgactgca tcatcaagaa tggagctgac ggcgtaatgg aagaagcggc       960
     cagcatcaag gagacgtttg tttccctggt ggtggagtcg cttatgaacc cccagcaggc      1020
     tactgcgctg atgagatgca tcagccggta tgacgggatc gtccaggcgc tcatggtgcg      1080
     caacgcagtg ttggaggaat ccagcaaact gcgagcggcg atgccgctgc caccgccgcc      1140
     ggttcagatg ccatcggtgc cgcaagctgt ggtctcacgg ccacccgttg ggtatgcatc      1200
     cgcatatccc agcctgccgg caccttccgc agctcccgtg cccgcgccgc gaaaaccacg      1260
     cgatacgtgg tcggccgtgg tgatgagcaa ggacccgaaa ctttcgggta aagaggttgc      1320
     tgaaaaggtg cgccgggaga ttgctccttc gctgggagtt cgcctgcacg aggtgagagg      1380
     gcttgcgcgt ggcggtgcca ttatccgcac cccctcgtca ggtgagatca agagggtcgt      1440
     agccagcaag aagttcggcg agattggcct cgaggtcaag ccgaacgctg tgcaacggcc      1500
     caaactggta gtccaggatg ttgctaccca gatcgctccg gaggagttta tggcggagtt      1560
     gtatgccaac aacctccgag aacacatccc ggaggcggag ttccgcaagg ctgtccatct      1620
     ggacaccaag ccttggacgg ttgccgacgg agctacggtg agtgtcacgt tggagtgcga      1680
     acccaaggtg ctagatctgc tggaaggtgg gcggatctac attaagtggt tctcctaccg      1740
     atgcagggcc cttgtgcgga cgtacgcgtg ccacaggtgt gttggcttca accacaaggt      1800
     ggcagagtgc aagcagaagg acaatgtctg caggcaatgc ggacagtccg gccacagtgc      1860
     gcgcagttgc accaatccgg tggactgccg gaattgccga ttctacgggc atccctcggg      1920
     gcacagcatg ctgtccccga gctgtccggt gtatgcggcg gtgctagcga gggtgaattc      1980
     tagacattaa tgtttaggtt catccaagca aactgtggtc gaggtcgggc tgcgactctt      2040
     gagctcgcag tccgcctgag ggagtccgga tgtctgtttg cactgctgca ggagccatac      2100
     gttggtagcg ggacgagtga tgtgctgcct gaaggaatga gaatatacac cgatcggaga      2160
     caaaaggcag ccatcctcgt ggatcaccag gatgttatct gcatgccgat ggagccactt      2220
     accaccgact acggcgtatg cgtgagtgta aaagggagtt ttggctcaat cttcctttgc      2280
     tccgcatatt gccagttcga caccgagcta gagccgtacc tcaggtacat ggatgcggtc      2340
     ctgctgcagg ccagcagaac ccccgcaatc ctgggactcg acgcgaatgc agcatccccc      2400
     atgtggttta gcaaactccc tcggaacccc gagggacatg ctaactacaa ccggggtgag      2460
     ctgctgtctg agtggatgct ggagaatgga gccgttgctc tcaaccagcc cagcccggtg      2520
     ttcacgttcg atacctaccg tgcgcgtagc gatatcgacg tgacaattgc caacgacgca      2580
     gcatcgatgt gggccacatt cgagtggaga gtggacgagt gggagttgag tgaccataac      2640
     attatcactg ttgtggttac tccaacgact acgcgcgcag ttgagagcct agctcctgtg      2700
     ccgtcctgga acatctccaa tgctcgctgg cagttgttcg aacaggagat ggtgagtcgg      2760
     gcagccgata ttccggaaga cttctcacag tcgccgttgg atcagcaagt ttcgaccctg      2820
     cgctgcatgg tccacgatgc gtgtgacctt gcaatcggaa ggaggacgcc gagatcgcct      2880
     aggagaagga agccaggttg gtggaccgcc aacctgaaca cggcgaaacg cgaagtccgg      2940
     agacttcgcc gccggcttca aaacgctcgc cgtcgaggag acgacgatgc ggctgagctg      3000
     attgtggtcg cgctgaggca agcctcagac gactacaaga agctcatcct aagggcgaag      3060
     gaggacagct ggagacgctt cgtgggagaa aacgcacacg atccctgggg gcgcgtctac      3120
     aagatctgcc gaggacgcag aaagtgcacg gagattgggt gcctccgcgt tgatggcgag      3180
     ctggtcaccg attggggtga ctgtgcgcga gtgctcctcc gtaacttttt cccagttgcg      3240
     gagtccgatg caccgattgc cggagcggag gaggtcccac cggccctcga ggaagtagag      3300
     gttgatgctt gtgtcgccag gttgaagagc cgtcgctctc ccggcatgga cggcatcaat      3360
     ggcactatct gcaaagcagt gtggcgcgcc atacctcagt atctgacggc gctttattcc      3420
     cgttgcatcc agtcgggtta cttcccccga gagtggaagt gcccacgtgt agtggcgcta      3480
     ctcaaggggc ccgacaagga taggtgcgaa ccctcgtcgt accgtgggat atgcctgttg      3540
     ccagtatttg gcaaggtgct tgaggccatc atggttgatc gtgtgagaga agttcttccg      3600
     gaaggatgca gatggcagtt tggatttcgc caaggacgat gtgtggacga cgcttggagg      3660
     cacgtcaaga gcagtgtcgc tgccagcccg gcacgatacg tgctcggcat cttcgtcgac      3720
     ttcaagggtg cgttcgacaa tgtcgaatgg agtgctgcac tgcgccggct cgccgacttg      3780
     ggatgccgtg agttgagctt gtggcagagc ttcttctcag acagaagagc agtgatccga      3840
     agcagttctg gaactgtgag tgttccagta actagaggct gccctcaggg atccattagt      3900
     ggcccattca tttgggatct gctgatggac gtcctgctgc ggcgcctcca gccatactgc      3960
     gcttttagcg cgtatgcgga tgacctgctc cttcttgtcg aaggcaactc ccgagccgtg      4020
     ctggaggata aaggagcgca actgatgtcc atcgttgaag cgtggggtac ggaaatcggt      4080
     gttaccattt ccaccagcaa gacggtgatt atgctgctga agggagccct cgcgcgcacc      4140
     ccgttggtga gatctgccgg agcaaatctc ccatatgttc gcagctgccg gtaccttggc      4200
     atcacggtca gcgagcgcat gaatttcttc atgcacatcg catcgctgcg tcagcgaatg      4260
     accggagtcg tacaagcatt ggcgcgtgtg ctgcgagtcg actggggatt cagtcctcgg      4320
     gccaggcgga ccatttatgc tggactcatg gtgccttgtg cactatttgg tgcctcggtg      4380
     tggtatgtcg tgacgacgag gcaagttgta gctaggaggc gacttcttgc ctgccagagg      4440
     ctgatccttt taggatgcct cccggtatgc cgtacagtgt caaccctggc actgcaggtg      4500
     cttgctggag ccccgcctct tgacttggct gctatgaaaa tagccgtcaa gtacaagttg      4560
     aagcgtggat acccgttgga gggggacgac tggctctatg gcgaggacct ttcaggtctg      4620
     agctggacgc aacgagtctc gcgggtagac gaatgccttc tgtcggactg gcagagcaga      4680
     tgggatgatg gtgattcgcc tggtcgggtg actcacaagt tcatcccaga tgcagggttc      4740
     gtctatcgga atccggattt cgggttctcc atgcgcgcgg gattcttgtt gacagggcac      4800
     gggtcgttca atgcatttct gcatagaaga gcccttagcg atactgctgc atgctcatgt      4860
     ggcgatccta atgaggactg ggaacacatt ttatgtgctt gcccccttta tgcagacttg      4920
     cgagacctcg atggactcgg tttgcagcac gttggcggaa cctggacgtt tggaaggatt      4980
     ttggagagcg gcgacaggac cagaagactc acggagtttg ctgaggaggt gtttcggagg      5040
     aggaggggct tgcagtagcc catttttctc gccgtgtggt agcggcgtag aatactgcca      5100
     cagctcccca tagcttgtcg taggaggcga ctaatatggc aaggttcccc atccgagctt      5160
     gtcggagcta aaggggtggg tcaccgagcc cacaaacttc ggtaccacgg gttggatagt      5220
     gtccaagcac taccatttga ggtaggcccc cttgtgggag tatcgtggtg gctgtggttg      5280
     atacccaaat cgcgggtaga gtcctcggac tcgacgtgga gttgcgttat acaactcggg      5340
     cgctgtgacc catagatcag tagaggtgat agatacactt cgctcctcac caaggggaag      5400
     tattctgtcc gactcgcaga tacttaaatt ggtaccgggc tagttgctat gtatttgcta      5460
     tagcttctat tccggggcgt tggcaggcgt accatccgtg cccatgcact atatgcctac      5520
     tcgtaggtat attcgagtgc cgtggttgta atcccttcag tgtggaacac gccacgttaa      5580
     acaagatcgg agagatccga gacatacacc                                       5610
//
ID   R1A_DSer    repbase;    DNA;    INV; 5419 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1A_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5419
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2050-2050 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. It is inserted in 28S rRNA genes.
CC   The junction sequence indicates that the integration of this
CC   family of non-LTR retrotransposon deletes the sequence of
CC   GATTCCCTC, just upstream of the canonical TSDs of R1
CC   (TGTCCCTATCTACT).
XX
FH   Key           Location/Qualifiers
FT   CDS           822..1808
FT                 /product="R1A_DSer_1p"
FT                 /translation="MAELSATQRLVRRTFCSLGATSTEELSLAISRYDELV
FT                 MALMLRCGELETRLTLPPTPPPSLPVAASGFPQLPQTAPVAAPRATKVRET
FT                 WSAVVKCDDPALSGKAIAEKVRTMVAPSLGVRVHEVRELRRGGGAIIRTPS
FT                 VGELQKVVHSRKFAEVGLNVAKNAVEKPRMVVYDVDTAIGPEEFMKELLDN
FT                 NFDDEMTPEEYKKAVHLVTKPWSVTDGATINVTLEVNDRAMAKLDVGRVYI
FT                 KWFSFRCRSQVRTYACHRCVGFDHKVGECRQKANVCRQCGQIGHTAVKCQN
FT                 PVDCRNCRHRGQPSGHHMLSSACPIYGAVLARVQARH"
FT   CDS           1811..4867
FT                 /product="R1A_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSFIQANCGRGRAATIELGVRLRSSGSMFALLQEPY
FT                 LGVDGMDVLPEGARMFTDRRGKAAVIVDQRDAICMPVETLTNEFGVCLVVK
FT                 GSFGSIFLCSAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSPMW
FT                 FSKLSRHAEGQANYSRGELLSEWMLEARAAALNQSTEVYTFDNYRARSDID
FT                 VTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTTSAVESIAPVPSWN
FT                 FSNARWRLFEEEMVRRAADIXENFSESPLDQQVSTLRSIVHDVCDIALGRK
FT                 APGSPSRRARWWTADLCAARREVRRLRRRLQDARRRDADATAELLLVELRR
FT                 ASADYKKLIWRAKMEDWKRFVGSHSDDPWGRVYKICRGRRKCTEIGCLRVN
FT                 GELITDWGDCARVLLRNFFPVAESDVPIAIAEEVPPALEVFEVDACVARLK
FT                 SRRSPGLDGINGTICKAVWRAIPQHLASLFSRCIRSGYFPTEWKCPRVVAL
FT                 LKGPEKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQ
FT                 GRCVEDAWRHVKSTVDASPAQYVLGIFVDFKGAFDNVEWSAALRRLADLGC
FT                 REMSLWQSFFSGRRAVIRSSYGTVNVPVTRGCPQGSISGPFIWDLLMDVLL
FT                 QRLEPYCPLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEIGVAVS
FT                 TSKTVIMLLKGTLRRAPTVKFAGANLPYVRSCRYLGITVSEGMKFLTHIAS
FT                 LRQRMTGVVGALARVLRVDWGFSPRARRTIYAGLMAPCVLFGASVWYVTAE
FT                 QVAAKRRLASCHRLILLGCLSVCRTVSTAALQVLAGAPPLDLAAKQLAVKY
FT                 KLKRGFPLEENDWLYGEDLEGLNWEQRKARIEECMLLSWQSRWDDHSAPGR
FT                 VTHRFVPDVTSIYRDPSFGFSMMGSFLLTGHGSLNAFLHGRALSDTTACAC
FT                 GDPYEDWMHVLCACPLYADLRDLDGLGVRRVGESWIFDGILEGRDRTQRLM
FT                 QFAEEAFRRRRGL"
XX
SQ   Sequence 5419 BP; 1141 A; 1412 C; 1666 G; 1199 T; 1 other;
     cggacgtgtt tttcggtgcg ctcgttatct gtctgtgaaa aactgtgttt ccttgcgaaa        60
     ttattaaaat aaagtggata agtcgataga gttgtgctcc gcgaaaatag tgcatataaa       120
     ttcgtgtcgg aaaacattcc tgttttgcaa ttaattgcaa ttatattttt gcaaattaag       180
     tgcaaaacaa aaaacacgtg tcgaaattgg gctttgggtt cagcttttga acagctgttg       240
     ccgtggttcg tgtctctgct aagccggccg tagcggttgt gtattgtgta aaaaaagctt       300
     ccgtaaaaag cttgtgtaaa ataaaaactt ctgcagttac catcgtcccc aacaggtgga       360
     gctgctggag ttaatggaga gcgacagtag tacgagtgcc atgagcgttg gcagcgcctc       420
     tggcggggct gttaagggga ggcgcagagg ccgccctgcc tctaagagct cggcgccgac       480
     gcaagccaag ttgattgcct tggctgccaa gggcgtgcct gagcccgttg gcaccgtaga       540
     ggagcctttt tcctccttgg aggagccaag ggcgtcgacg tcctctgccg ccgctgcctc       600
     tgccgacgtt gctgccggtg acaagaccga cgtcgctgcc cccgccgctg cccccgccgc       660
     tgcccccgcc gctgcccccg ccgctgcccc gccgctgccc ccgccgctgc ccccgcgctg       720
     cccccgccgc tgcccccgcc gctgcccccg ccgctgcccc cgccgctgcc accactgctg       780
     ttgctgctac cgctgccgtc cgtgctggac aagctgccat tatggcagag ttgtcggcca       840
     cgcagcgctt ggtccgtagg acgttttgca gccttggagc cactagcacg gaggagctat       900
     cgctagccat cagccgctat gacgagctcg tcatggcact gatgctgagg tgcggggaac       960
     tggagacgcg gctgacccta ccgccaacgc cgcccccgtc gttgccagtt gcggccagcg      1020
     gttttccgca gctgccgcag actgcacccg tcgctgcccc gcgtgccact aaggtgcgcg      1080
     agacgtggtc agcggtcgtg aagtgcgacg acccagcgct atccgggaaa gcgatagccg      1140
     agaaggtgag gaccatggtg gcaccctcac ttggagtcag ggtgcacgaa gtgcgagagc      1200
     tccgacgcgg cggtggtgcg attatccgca caccctcggt cggagagctg caaaaggtcg      1260
     tacattcgag gaagttcgcc gaagtggggc tgaatgtggc caagaacgcc gtggagaagc      1320
     ccagaatggt cgtatacgac gtggacaccg ctattggccc tgaggagttt atgaaggagc      1380
     tcctagataa caacttcgat gacgagatga ctccggaaga gtataaaaag gctgtccacc      1440
     tggtgaccaa gccctggtct gtgaccgatg gtgccacgat taatgtgaca ctggaggtga      1500
     acgacagggc catggcgaag cttgatgtag gcagggtcta catcaagtgg ttttcattta      1560
     gatgccggtc acaggttcgc acctacgctt gccataggtg cgtcggattc gaccacaagg      1620
     tcggagagtg caggcagaag gcgaatgtct gccgccagtg tggacaaatc gggcacactg      1680
     cagtaaaatg ccagaacccg gtggactgcc ggaactgccg gcatagaggg caaccctcgg      1740
     ggcatcacat gctctcaagt gcatgcccaa tatatggcgc agtgctagcg agggtgcaag      1800
     ctagacatta atgtttagct tcatccaagc gaactgtggc cgaggccgag ctgcgaccat      1860
     cgagcttgga gtccgattaa ggagttcggg ctcgatgttc gcgctgctgc aggagccgta      1920
     tctcggcgtc gatgggatgg atgtgctgcc cgaaggagca aggatgttca ccgaccgacg      1980
     agggaaagca gccgttatag tggatcaacg cgatgccatc tgcatgccag tggagaccct      2040
     caccaatgaa tttggcgtat gtctggtcgt taaagggagt tttggctcaa tcttcctttg      2100
     ctcagcatac tgccagttcg atgcacctct ggaaccgtac cttaggtaca tggatgcggt      2160
     cctgctgcag gccagcagaa cccccgcaat cctgggcctc gacgcgaatg cagtatcccc      2220
     catgtggttt agcaaactct ctcggcatgc cgaggggcaa gctaactaca gccggggtga      2280
     gctgctgtct gagtggatgc tggaggcaag agccgccgcc ctaaaccagt caactgaggt      2340
     gtacacgttc gataactaca gagctcgtag cgatatcgac gtgacaatcg tcaatgaggc      2400
     agcatctatg tgggccacat atgagtggag agtggacgag tgggagttga gtgaccataa      2460
     cattattact gttgtggccg aaccaactac cacgagcgca gttgagagca tagctcctgt      2520
     gccgtcctgg aacttctcca atgcccgttg gcgattgttc gaagaggaga tggtgagacg      2580
     agcagccgat attmcggaaa acttctccga gtcgccgttg gaccagcaag tttcgaccct      2640
     gcgcagtatt gtacatgatg tgtgcgatat tgcgctggga agaaaagcgc ctggatcgcc      2700
     cagcagaaga gcacgttggt ggactgccga cctctgcgct gcacggcgcg aagtccgcag      2760
     acttcgccgc cgactccagg atgcccggcg tcgtgatgca gatgccactg ccgagctctt      2820
     gctggtcgag ctgaggcgtg cctcggccga ctacaagaag ctcatctgga gggcgaaaat      2880
     ggaggattgg aaacgcttcg tgggaagtca ctctgatgat ccatgggggc gcgtctacaa      2940
     gatttgccga ggccgcagaa agtgcacgga gattgggtgc ctccgcgtga atggcgagct      3000
     gatcaccgac tggggtgatt gtgcacgagt gctcctccgc aactttttcc ctgttgcgga      3060
     gtctgatgtg ccgattgcca tcgcggagga agtcccaccg gccctcgagg tattcgaggt      3120
     tgatgcttgt gtcgccaggt tgaagagcag gcgctctccc ggcttagacg gcatcaatgg      3180
     cacaatctgc aaggctgtct ggcgcgccat acctcagcac ctagcatcgt tgttttcccg      3240
     atgcatccga tcggggtatt ttcccactga gtggaagtgt ccacgcgtag tggcgctgct      3300
     caagggaccc gagaaggaca agtgcgagcc ctcctcgtac agggggatct gcctgctgcc      3360
     agtttttggc aaggtgctcg aggctatcat ggtgaatcga gtgagagaag ttcttccgga      3420
     aggctgcaga tggcagttcg gatttcgcca aggacgatgt gtggaggatg cctggaggca      3480
     cgtaaagagc actgttgacg ccagcccggc gcaatatgtg ctcgggatct tcgtggactt      3540
     caaaggagca tttgacaacg tcgagtggag cgctgcactg cgcagactag ccgacttggg      3600
     atgccgggaa atgagcttgt ggcagagctt cttttctggc cgaagagcag tgatccgaag      3660
     cagttacggc actgtgaatg tgcccgtaac tagaggttgc ccgcaggggt caatcagcgg      3720
     cccatttatt tgggatttgc taatggatgt actgcttcag cgcctcgagc cgtattgccc      3780
     attgagtgca tacgcggatg atctgcttct tctcgtcgag ggaaattccc gagccgtgct      3840
     agaggagaaa ggagcgcaac ttatgtccat cgttgaaacg tggggagcgg aaattggcgt      3900
     tgccgtttcc accagcaaga cggtaataat gctgcttaaa ggtaccttga gacgtgcgcc      3960
     cacggtaaag tttgctggag caaacctgcc gtacgtgcgt agctgtcggt atctgggcat      4020
     cacggtcagt gaaggaatga aattcctcac gcacatagct tcgctacgtc agcgaatgac      4080
     cggagtcgtt ggagcattgg cgcgtgtgct tcgagttgac tggggtttca gtcctcgagc      4140
     caggcggacc atatatgccg gactcatggc accttgtgtg ctatttggtg cctcggtatg      4200
     gtatgtcacc gccgagcaag tagctgccaa gaggcgacta gcgtcctgtc atagactgat      4260
     cctgcttgga tgcctttcgg tatgccgaac agtgtccacc gcggcactgc aggttcttgc      4320
     tggagctccc ccgcttgact tggctgctaa gcaattggca gtcaaataca agctgaagcg      4380
     tggattcccg ctggaggaga acgactggct ctacggtgag gacctggaag gtctgaactg      4440
     ggagcagaga aaggcgcgga ttgaggagtg catgctcctc agttggcaga gcagatggga      4500
     tgaccacagc gcaccagggc gggttacgca ccggttcgtc ccagatgtta cttccatcta      4560
     tcgagaccca agttttgggt tttcgatgat ggggtctttc ctgctcacag ggcatgggtc      4620
     gctcaatgca tttctgcatg ggagagccct cagcgacacc actgcatgcg catgtggtga      4680
     tccatacgag gactggatgc acgtattgtg tgcatgcccc ctgtatgcag atctgcgaga      4740
     cctcgatgga cttggagtgc ggcgcgttgg cgaaagctgg atatttgatg gaatcctgga      4800
     gggtcgggac aggactcaac ggctgatgca gtttgctgag gaggcgtttc gcaggaggag      4860
     gggcctttag cccaacatct ttccgtgtgg ctagcgggtg agaatactgc cacagcctgc      4920
     cgttgcttgt cgtaaaaggc gacttatgcg gcaatgggtg ccctatccgg gttttgtcgg      4980
     aaccaaaggg gtgaggccca ccgagcctgt aatttcggta ccacgggttg agcagttcca      5040
     agactgctca ttgaggttgg cccccttgtg ggagtatcgt ggtggctgtg gttatcccaa      5100
     aatcgcggga gatcccttgg gatcgacgtg gagttgcgtt ctcaacctgg cgctgtgacc      5160
     attagatcag cagagattta agataggtct cgacccctca caaaggggga gtgcacgccc      5220
     ggcttgcgtg cgctcgaatt tgtaccgggg tagttgctat gtacatagct atagcttctg      5280
     gtccggggcg gttggctggc gcttaatcca gactgttgca ttatgtggtc aattctggcc      5340
     acattgaaat gctgtggttg tactcccttc aatgcggaac acgccacata aaacaagtac      5400
     ggagagatcc gattctcga                                                   5419
//
ID   R1A_NVi     repbase;    DNA;    INV; 6351 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   vitripennis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1A_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6351
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           1085..2626
FT                 /product="R1A_NVi_1p"
FT                 /translation="KGRCCFYCVCVFACLLARLHVLSAATGMGAKSRRKKK
FT                 RASSDAASSSRSDPSPEARIRAADEAGSESESHAHARCRSPIANGKRLWAK
FT                 TPTNASVNASDSQSECEEMEVVPVSAKRGLPASESAVGPRAKKRQQTLLSP
FT                 RVSVERMSAHVNEEPQVNASVNKNVQTCVNDSERVGDMARIGDKLREFILN
FT                 DANKVSKHASKIVLGCVSEYEQFLMRLQCENAELRGRLHESEKLCASVVKE
FT                 CARAPMAPYTTVAAARGVPEQRATTKPVSVAKPSYALVLKGNENEPNTAIL
FT                 NRLKSASGCENVRVKNVREARNGGVIVETLSEKERECLKRAVSNVRVNLSA
FT                 NEPRKLNPRVIVYDVPNEMTEERFLSSLYEKNLSGVIERENVGREVRVASR
FT                 QSKPGVSVGNVILDVAGRIRDRLLEEKRVYIEWNAYRVSKYENVPRCYGCF
FT                 SYGHLLRECKGERLCYRCGKPGHRGAGCREREDCGNCRARGLSATHSALSP
FT                 ECPEYKWRLERLRGRISS"
FT   CDS           2622..5801
FT                 /product="R1A_NVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="AHKMAHSREIRVLQVNAQRGYSVMCDLGERLLNESID
FT                 VCLIQEPHCVNGRVVGLPYGTRVFVSKSGRAALVVAGDTIECLSLDDWDCE
FT                 NGVCVWTKGVHGEVYMVSVYCRFGEDIEPYLLSLDRLLERIAGHECILGMD
FT                 ANASSGLWHSKDSTSSREREARGHALERWILANEWGLNILNEPSEHYTFSG
FT                 PRGQSDIDVTLSNIRRHDCKLEWEVRCEWGISDHNPILIRLWHGVNEASPA
FT                 AVPPPLSWRSWKHGYGRGLYMDVLNDRADELGLTSFSDLDSSQMALKMTEW
FT                 LTSANDECMKRAKVMRREWVVWWTDELEYMKRDVQRCRKKYQRARCRQDEN
FT                 VADLKSEYRKCEREYKCSMREVKERDWREAVGRDANDDPWGRVYRICRGKN
FT                 KKSDLAGLKTPDGCTKTWMESASVLMKDFYPRDEGTNVERMPEMLNVTNDG
FT                 RGEEEYEWSEVNLAVDKLRQRKAPGLDGITSSVIKYAWLAIPMYMKCMYDR
FT                 CLKDGNFPAIWKKARVVVLLKGGDRDKKDPGSYRNISLLSGLGKPLERLMI
FT                 ERMMERMNGKWNDCQYGFREGRSCEDAWMRFKDSVNSVNSKYAVGILVDFK
FT                 GAFNNLRWSVILRYLLECGCDEHEMRLWMSYFNERYASLSSEMNEVMVKEE
FT                 RGCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANGNSRMEM
FT                 ERMADECMRIVYEWGREVGVSVSEKKTVCIMLKGKLNVDGRKMRVTVAEGT
FT                 LSSIGYVKSARYLGVCMGERMSFAEHIRGLRTKVMGAIGGLRRVMRKEWGV
FT                 KKKTACTWTKGLLLAGVMYGSSVWYESMKYKTMRESMNSIQRCAMYACLRV
FT                 CRTVSTEAMQVLLGWLPWDLECVKRANAFKARRGIGMNESDLVTDAEIVEK
FT                 GVRDACKLMKERVHEIWQRRWSESTKGRVTHEWMCDVNFACERMWFEPSLR
FT                 VGYILTGHGTLNAWLYDRGLADSAACPCGAPREDWMHVLTRCDMYESFRRL
FT                 DEMGVLEDANGRMDVSGVLSARSQYECLCTFIERAYRMRASVISRMNEEER
FT                 PNE"
XX
SQ   Sequence 6351 BP; 1546 A; 1302 C; 2057 G; 1446 T; 0 other;
     gtatacctcc agacgttgag ctgagcacac gtgtttttcc gcgagtctca gtgctgtgcg        60
     tctctagctt tttccaccta ctccactgcc gcatttttac ggttttgggg ctctggtggt       120
     gaatacgcgt gtttagtgtg tttctgtagt gtttgtttat tgctaaaagt gcctgcgtcg       180
     agtgtgaatg gattaaattg tgtaaaagtg cgtgtgaaag tttctgtgcc gtggctgctg       240
     cggaggcagc taagccccgc cccccttttt cattcggggc gcgatatctc gacttccggt       300
     ctggggaggg gtctgaaatt tgtcaggggt gcttcctcac ataattgtga ggaacctgcc       360
     gaatttcgga tttttcgacc aaccgtttcg cgagctacag aaacgacgtc gttttgacag       420
     ccgcgcggga gctccgcccc tcgtctgcac ttgcgggtta atatctcggc ttccggtcga       480
     cagaggggtc cgagattttt caggggtgtt tcctcacata attgtgggga acctgcgggg       540
     tttcgaattt ttcgaccgac catttcgcga gttacggaaa cggcgttctt ctaacagccg       600
     cgctgaaact aataagaggc tccgccccca gtctgcactt gccgcttgat atctcggctt       660
     ccggtcgaca gaggggtccg aaatttttca ggggtgtttc ctcacataat tgtggggaac       720
     ctgcggggtt tcggaatttc gaccgtccgg cccgggattg ctcaaaaggg gaagtgagtg       780
     ggagttgcct gtagaagcgg gggaactttc tccccttctc tcgctcgtcg taggcattta       840
     aaagtgcgat atctcggaca gtgctctata gaagcgagtg aaatttttct gtgtgtgcta       900
     gtggacgttt acgcgatctg ccacataaat ttcacggcga tcacctgact cttccgccgt       960
     tggcgggaaa agactttcgt ggcggtgtga tcgtgtatac gcgcccgtat aggcgcgaca      1020
     ggctgcctcc cctgcaacct gccggctctg cgtgactgac cactttttgt ttgcacgccc      1080
     gtaaaaaggt aggtgttgtt tttactgtgt gtgtgttttt gcgtgcctgc ttgcgaggct      1140
     tcacgtgctg agtgccgcca ctggaatggg tgcgaaatcg cgacgaaaga agaagcgtgc      1200
     gtcctccgat gctgcctcca gtagtcggtc cgacccctct cctgaggcgc ggatcagggc      1260
     ggctgacgag gcggggtcgg agtccgagtc gcatgcgcac gctaggtgtc gctcgccgat      1320
     tgcgaacggg aagcgactat gggcgaaaac ccctacgaat gcaagtgtga atgcgagtga      1380
     tagccagagc gaatgcgaag aaatggaagt ggtgcctgtg agtgccaagc gcgggctgcc      1440
     agcatccgag tcagcggtgg gtccacgggc caagaagagg cagcagactc tcttgagccc      1500
     acgtgtgtct gttgagagaa tgagtgcgca tgtgaatgaa gaaccgcaag tgaatgcaag      1560
     tgtgaataag aatgtgcaaa cgtgtgtgaa tgatagcgag cgtgttggag acatggcgcg      1620
     cattggggat aaactccgtg agtttatcct caatgatgcg aacaaggtct ccaaacatgc      1680
     gagcaagatt gtcctgggat gtgtgagcga gtatgagcag ttcctcatgc gcctccaatg      1740
     cgagaacgca gaactgcgcg gcagactgca tgagagcgag aagctgtgtg cgtctgtggt      1800
     taaggagtgt gcgcgtgccc ccatggcccc gtacaccacg gtcgcggctg ccagaggagt      1860
     gcctgaacag cgtgcgacta cgaagccggt gagtgtggcc aagccgagct acgccctcgt      1920
     actcaaaggc aacgagaatg agccgaacac ggccattctc aataggctca agagtgcgag      1980
     tggctgtgag aatgtgcgtg tgaagaatgt gcgtgaagcc agaaatggtg gtgtgattgt      2040
     tgagaccctc agtgagaaag agagagaatg tctgaagcgt gcggtaagca atgtgcgagt      2100
     gaatctgagt gcaaacgagc cgcgaaagct caatccgaga gtgattgtgt atgacgtgcc      2160
     caatgagatg actgaggagc gcttcctcag cagcttgtat gagaaaaatc tgagtggagt      2220
     gattgaaaga gagaatgtgg gaagggaggt gcgtgtggcc tccagacagt cgaaaccggg      2280
     agtttcggtc ggcaatgtca ttctcgatgt tgccgggcgg atccgggatc gactcctgga      2340
     ggagaagcgt gtgtatatcg agtggaatgc ataccgtgtg agcaagtatg aaaacgtgcc      2400
     gcgatgctat gggtgtttca gctatgggca tctgctacgt gagtgcaagg gtgagcgtct      2460
     gtgttataga tgcggaaaac ccgggcatcg gggtgcgggc tgcagggagc gggaagactg      2520
     cgggaactgt cgggcccgcg gtcttagtgc gacccactcg gccctctctc ctgagtgccc      2580
     ggagtataaa tggagattag aacgactgag agggaggata agctcataaa atggcgcatt      2640
     cccgggaaat tcgtgtgctt caagtgaatg ctcaacgggg atacagtgtg atgtgtgatt      2700
     taggtgaacg actgctaaat gagagtattg atgtgtgcct gatccaggag ccgcactgcg      2760
     tgaatggtcg tgtggttggg ttgccgtatg gcactagagt gtttgttagt aaaagtggca      2820
     gggcggctct tgtcgtggcg ggtgatacca tcgagtgcct ctcattggac gattgggatt      2880
     gcgagaatgg tgtatgtgta tggacgaaag gcgtccacgg cgaggtttat atggtctcgg      2940
     tatactgccg tttcggcgag gatatcgagc cgtatctgct gagcctggac agactgcttg      3000
     agagaatagc tggacatgaa tgcatcttgg gtatggacgc gaatgcctcg agcggtcttt      3060
     ggcacagcaa ggattcgaca tcgagtagag aaagagaagc gagagggcat gctctcgagc      3120
     ggtggattct agcgaatgaa tggggactga atattctgaa tgaacctagt gagcactaca      3180
     ccttcagcgg ccctaggggg cagagcgaca ttgatgtcac tctgtccaat attcgacgac      3240
     atgactgtaa gcttgagtgg gaggtcaggt gcgaatgggg aataagtgac cacaatccca      3300
     tactcatccg attgtggcac ggcgtgaacg aggcttcgcc tgcggctgtt cctcctccat      3360
     taagttggag gtcttggaaa cacggctatg gacgtggcct atatatggat gtactgaatg      3420
     acagagcaga tgagcttggt ctgacctcgt tttcagacct tgactcatca caaatggctc      3480
     tgaagatgac tgaatggttg acgagtgcta atgatgagtg catgaagaga gcgaaagtga      3540
     tgaggagaga atgggttgtc tggtggacgg atgaactgga atatatgaaa agagacgtgc      3600
     agcggtgccg aaaaaagtac cagcgtgcaa gatgccgtca agacgagaat gtggctgacc      3660
     tcaagagtga atatagaaaa tgcgagagag aatacaagtg ttcgatgcgt gaagttaagg      3720
     agcgtgattg gagggaggcc gttggcagag atgccaacga cgacccctgg ggacgcgtgt      3780
     atagaatctg ccgcggcaag aataaaaaga gcgaccttgc tgggctaaag acgcccgatg      3840
     gatgcacgaa gacatggatg gagagtgcaa gtgtcttgat gaaagatttc taccctcgtg      3900
     atgagggtac gaacgtggaa agaatgcctg aaatgctgaa tgtgacgaac gatggcagag      3960
     gtgaggaaga gtatgaatgg agcgaagtca accttgccgt agacaaactg cggcaaagga      4020
     aggcaccagg gctcgatggg atcacctcct ccgtgataaa gtatgcgtgg ttggctatcc      4080
     ccatgtatat gaagtgtatg tatgacagat gtctgaaaga cggaaatttc ccggcaatat      4140
     ggaagaaggc gagggtagtg gtcctgctca agggaggcga cagggataag aaggatcccg      4200
     gctcgtacag gaatatcagc ctccttagcg ggctgggaaa acctcttgag cgcctgatga      4260
     tcgagcgaat gatggaacga atgaatggaa aatggaatga ttgccaatac ggcttccgag      4320
     aggggcgttc atgcgaagat gcatggatgc gcttcaagga ctccgtaaat agcgtaaatt      4380
     caaagtatgc agttggaatc cttgtcgact tcaagggagc gttcaacaac cttcgctgga      4440
     gcgtcattct gcgctacctc cttgagtgtg gatgtgacga gcatgaaatg agattatgga      4500
     tgagttactt taatgaaaga tatgcgagtc tgagcagcga aatgaatgag gtaatggtga      4560
     aagaggaaag agggtgcccg cagggatcca tctcgggtcc ctatatgtgg aacctctgta      4620
     tgaatggact actagatcgg ctgagtgcaa tgaatgaaag gatcgtagca tatgccgatg      4680
     acctgatgat tgtcgcaaat ggaaacagca gaatggaaat ggagcgaatg gccgacgaat      4740
     gcatgcgcat cgtgtatgaa tggggaaggg aggttggagt tagtgtgtct gaaaaaaaga      4800
     cggtatgcat aatgttgaaa ggtaaactga atgtagacgg acgaaagatg agagtcactg      4860
     tggctgaggg cactctctca tccatagggt acgtcaagag tgctaggtat ttgggtgtat      4920
     gcatgggtga gcgtatgagt ttcgcggagc atataagagg acttagaacg aaagtgatgg      4980
     gagcgattgg aggcttgagg cgtgtaatga ggaaagaatg gggtgtgaaa aagaagactg      5040
     cgtgtacgtg gacgaaagga ctgctcttgg ccggagtaat gtatgggtcg agtgtatggt      5100
     acgagagcat gaaatataag actatgcgtg aaagtatgaa ttcgattcag aggtgtgcga      5160
     tgtatgcatg tctgagagtc tgcaggactg tctccacgga ggccatgcag gttctccttg      5220
     gatggctccc gtgggaccta gagtgcgtga aaagagcaaa tgcgttcaag gctcggcgcg      5280
     gcatcggaat gaatgagagt gacctagtga ctgatgctga gattgtggag aagggcgtgc      5340
     gagatgcgtg taagttgatg aaagagagag tacatgagat ctggcagcgc cgatggagtg      5400
     aatcaacgaa aggacgtgtg acgcatgaat ggatgtgtga tgtgaatttt gcctgtgaga      5460
     gaatgtggtt tgaacctagt ctccgtgtcg gttatatcct aactggacac ggaacactga      5520
     atgcatggtt gtatgatcga ggtcttgcgg actccgccgc gtgcccgtgt ggtgccccgc      5580
     gtgaggattg gatgcatgtg ttaactaggt gtgatatgta tgagagtttt aggaggctgg      5640
     atgagatggg tgtgcttgag gacgcgaatg gaaggatgga tgtgagtggt gtgctcagtg      5700
     cgagaagcca gtatgagtgt ctgtgcacgt tcattgagcg tgcatatcgt atgcgagcaa      5760
     gtgtgatcag tcgaatgaac gaagaagaaa gaccgaatga gtgagtgaat gtggaaccgc      5820
     aaggggggct ctggtctcat cccctgggtc tagcgaaccc acggccccag ctaaccggtg      5880
     ctaccgagcc gggcagagtg caggatctgc aaagacggaa gagacttatc tcgaacctcc      5940
     aaccaggagg ctaaatggta ccacgggggt cgggggcccc agggctccga taggcttatc      6000
     gggaccctgc ccgaccatgg tgttggactc gtggtggcag ctggttgata gcccaaaacg      6060
     cgggcgagag gtatgggcgg tgacgtgctt cggcgcgggc tccgttttac gcctcgacgg      6120
     gtgagctgcg gtctcagctc gggcgctagc ctgcagagct agcaggggca tagatgggcc      6180
     ccgcctcatg cagagaggat cacctggtcc tgacaaacca ggaagagaaa tctgtagacc      6240
     tgacactagt caggttgcgc tggttcgggc gtgatcccaa cccctcgccc atgggggccg      6300
     tgtgaattaa gccggaaggc aggtgtcgca cgttaaatca acgagactca a               6351
//
ID   R1B2_DAn    repbase;    DNA;    INV; 1298 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1B2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1298
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 402-402 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~82% identical to R1B_DAn. Partial
CC   sequence.
XX
SQ   Sequence 1298 BP; 273 A; 331 C; 388 G; 306 T; 0 other;
     tgtccctatc ttccgaagag agcggacgtg tttttcggcc gcttcgtaga aaaaattaat        60
     atcagctaaa atacgctgcc tattttgaca atttaaagtg cgttttgtgt gcgaagtgcg       120
     gtgctacaag ttgcgatttg tgcggttgct gtagctaacc gattttcgtg gaaaatcgtg       180
     tttttccgtc gcgaaaattc gccacgtgtt ttggcgtaaa caataaagct ttaagctttg       240
     gtgctgccat ccgcgttgaa cgcaataaaa aagctttaaa cagctgtgtt ttggtgctgc       300
     aaacttagtg caaaacaata aaacagcttt tgacagctgt ttttagtgtt gccatatagg       360
     cgaaaacaca ttgaacagct gtgttttggt gctgctaact ttgcgcaaaa caataaaaga       420
     gctttttgtc agctgttttt agtgctgcca tatcggcaga aaacattaaa gcagctgagt       480
     gtggtgttgc cgtataggcg aaaagacatc gaacagctgt gtgtggtgtg gccgcgtgtt       540
     gcaaactttt tgtgctaatt ttgccgaact tttgtgcgcg cgaaattcga atttgaattt       600
     ttgaattcgg atttaaaaat gccgcgcggt cgtggaggcc gcagccgctc gggcagtcgc       660
     tcgagtgtcg cgagcgctgt aagcgtcgct agcgctgcca gcgtcgcagt cgaggcccgc       720
     caagcaagga agtcgaggga gcgctcgatt tctttcgacc tggaagcgga actggggccg       780
     aagcggatgg accagcgaag ctcgccgaag aaggccgtcg cggagatggc cttctcgtgc       840
     cctggagggc tggatggagc tgggctggaa gcccacggag tcaacaccgt cgcccccgct       900
     gccgccatca ttgccgagcc cgtcgccgtc gcccccgctg ccgcatcgtt tgctgtccct       960
     gctgctgccc tggagaagct tggagctcgt gcagccgttg ctgctggaca cggagcggtg      1020
     ctcacggagc tgtctgccac tcagcgggtc gtccgagatg ccctgatgag cggcaacctg      1080
     caggcagtgt cggccacgat gagccgatac gacgagctcg tggtggccct gatgctccgg      1140
     gttgcggagc tggagacccg gctcgccatg ccgccgccga tgacgccgag ccacaacacc      1200
     gttggacaag ccgccacccc cgtagcccca gttccaaggt gcgggagact tggtcctgcg      1260
     tggtgaaggg aacggacccg gagcgcgtga ttcgcatg                              1298
//
ID   R1B_DAn     repbase;    DNA;    INV; 5805 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   14-MAR-2012 (Rel. 17.03, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   ananassae.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1B_DAn.
XX
NM   R1B_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-5805
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. ananassae contains two subfamilies of R1.
XX
FH   Key           Location/Qualifiers
FT   CDS           462..1838
FT                 /product="R1B_DAn_1p"
FT                 /translation="MPRGRGGRSRSGSRSSVASVASVASAASVAVDVRQAR
FT                 KSRERSISFDMESEVEPKRLDQRSSPKKNNGAEMAFSCPGGLNGAGLEAHG
FT                 ANTVAPAAATIAAIIAEPVAVAPAAVAPVAVLEHATARAAVAAGQGAVLAE
FT                 LSATQRAVRGALLSGNLQTVSASMSRYDELVVALMLRVAELETRVAMPPPM
FT                 TSTLHHNAVGQAAVPVAPVPVPRTKVRETWSCVVKGTDPELSSSQIAEKVR
FT                 KEVAPALGVRVHEVRELKRGGAIIRTPSASEASKVAASRKFAEVGLSVERN
FT                 QAVKPRLTVFDVDTALSPDVFMEELYANNLKDEMTVADFKKSVHFASKPWT
FT                 AADGGTTNVTLEVSEKALAALDTGRVYIKWFSFRCRSQVRTYACHRCVGFD
FT                 HKVQECRLKVSVCRQCGQGGHVAAKCTNPVDCRNCRFKGLPSGHNMLSAAC
FT                 PVYSAVLARVNARH"
FT   CDS           1828..4905
FT                 /product="R1B_DAn_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="MQDTNMSRLLQINCQGSYAVMCDVGQMMCERGCVVAL
FT                 LQEPYNRYGGVRGLPANMRVFPDSRGRAAVVVNDPGIECTLVNSTDWGVCV
FT                 GLEGIFGRLYVVSIYCKFSEPLDPYLQYMNAVLLQVSSNPVILGLDANASS
FT                 PLWFSKMSRLGPGHRNYDRGETLAEWVITQDVQVVNKPSEWYTFNSPNGAS
FT                 DIDVTLANEAAMRVCDFQWNVLGGQGVSDHNPIEIVVTRAVALEPNERLNG
FT                 WCYRGANWALHGHYVREAATQVPFSTFCAMNVDEQVACVTEWVTSANDSMF
FT                 ARHRKVTRKRVKWWTRELQAEKRSLRSLRKRFQRARRTNADGVAQLRDQLS
FT                 TRVHEYKHRVLRVKDDEWRSFVDRNKHDPWGRVYKILRENGKEGSRDICAL
FT                 RVEGRDLITWKDCVECLLSEFFPREDRQHSVPDAVGDADPLLMSELQWAFT
FT                 KLRSGKAPGLDGFTGEICKSVWKSIPDHLYELYSKCVSEGAFPSAWKCTRV
FT                 SVLLKSLDRDRSNPRSFRGISLVPVLAKVLERVLVERLQESVGSQMSDRQF
FT                 GFREGRCAEDAWRSVKDSVRSSNSKYVLGVFVDFKGAFDYLSWASVIQRLN
FT                 ECGCRDVALWKSYFSGRNACVVGVNEVVWKDVARGCPQGSICGPFIWNLMM
FT                 DPLLWQLEQAWQCCAYADDLLILVEGQSRSMIEASASECLRIVGQWGDSVG
FT                 VSLARDKTVTMLLKGSLSRSPVVRLDGSSIRYAKQVKYLGVTVGERLRFAP
FT                 HLANLKDRLVGTVGRLRRVLRSEWGLSRKAARTIYGGLFVACAASGSPSWY
FT                 DAVLDVRGRMKILSVQRLILLGCMPVCRTVSTEALQVLFGAVPLDLEIRRR
FT                 AVSYKLKKGLPLLQDEWLFREMSGGNVESLGPSEWKSMLRECVLSDWQARW
FT                 DNSENGRATYEFIPDVSFVVDRPDFGFNLSAGFLLTGHGSLNAFLHRRNLA
FT                 GSPECRCGSRQETWKHVLCECPLYDDLRDLGGLGVVQAGGDFDFSQVLSTS
FT                 DRISRLNVFARAVFSRRRMR"
XX
SQ   Sequence 5805 BP; 1219 A; 1314 C; 1853 G; 1419 T; 0 other;
     cgaaccgaac ggacgtgttt tctgtgcgct ccggtgaaaa aattaatatc agccgaaata        60
     agctgccttt taagacaaat taaagtgcgt tttgtgtgcg aacgttgctg ctacaaagtg       120
     cgagttgtgc ggttagtgta gctaacgtat tttcgcggaa aatcgtgatt ttccaaagtg       180
     aaaattcgcc acgtggtttg agcaaaacaa taaagcttta agctttggtg ctgccatatc       240
     ggtgaaaact ataaaaacag ctttctatca gctgtttttg gtgctgccat atcggcataa       300
     aaaccttaag cagctgtgtg tggtgctgcc atataggcat aaaacagtgg aacagctgag       360
     tggagtgtgg ccgtgtgctg agaactcttt ggtcctaatt tgtgcggaac tttgtgtggc       420
     gcgtaaagtt cgaactttcg aatttaaatt taaattcgga aatgccgcgc ggtcgtggag       480
     gccgcagtcg ctcgggcagc cgctcgagtg tagcgagcgt tgcaagcgtc gctagcgctg       540
     ccagcgtcgc agtcgacgtc cgccaagcca ggaagtcaag ggagcgttcc atttcctttg       600
     acatggagtc ggaagtggag ccgaagcgcc tggatcaacg gagctcgccg aagaagaaca       660
     acggtgcgga gatggccttc tcgtgccctg gagggctgaa tggagctggg ctggaagccc       720
     atggagccaa caccgtcgcc cccgctgccg ccaccatcgc cgccatcatc gccgagcctg       780
     ttgccgttgc ccccgctgcc gtcgcccccg ttgccgtcct tgagcacgct actgctcgcg       840
     ccgccgttgc tgctggccaa ggagccgttc tggctgagtt gtccgcaacc cagcgtgccg       900
     ttcgcggtgc gttgctgagc ggcaacctgc agacggtctc tgcctcgatg agccgttatg       960
     atgagctcgt ggtggccctg atgctccggg ttgcggagct ggagacccga gtagccatgc      1020
     cgccgccgat gacgtcaacg ctgcaccata acgccgttgg acaggccgcc gtccccgtag      1080
     ccccagtccc agtcccccgt actaaggtgc gggagacttg gtcctgcgtg gtgaaaggga      1140
     ccgatccgga gctctccagc agccagattg cggagaaggt gaggaaggag gttgcaccag      1200
     cccttggagt ccgggtgcac gaggttcggg agctcaagcg tggcggagcc atcatccgca      1260
     cgccgtcagc ttcggaggcc tccaaagtcg cagcgtccag gaagttcgcc gaggtgggac      1320
     tcagcgtgga gcggaaccag gccgtcaagc cccgcctgac ggtcttcgac gtggacacgg      1380
     cgctgtcacc ggacgtcttc atggaggagc tctacgccaa caacctgaag gatgagatga      1440
     ccgtggctga cttcaagaag tcggtgcact ttgcatcgaa gccgtggacc gctgctgatg      1500
     gaggcacgac gaacgtgact ctggaggtca gcgagaaggc tctggccgct ttagacacgg      1560
     gccgtgtcta tataaagtgg ttcagcttcc gctgccggtc ccaggtccgg acgtatgcct      1620
     gccatcgctg cgtaggcttc gaccacaagg tccaggagtg ccgcttgaag gtgagtgtgt      1680
     gccgccagtg cggacaaggg ggccatgtag cggcgaagtg caccaatccg gtggactgcc      1740
     gaaattgtcg ttttaagggg ctaccgtcgg ggcacaatat gctctcggcg gcctgcccag      1800
     tgtatagcgc agttttggca cgtgtgaatg caagacacta acatgtctcg gctcttgcaa      1860
     attaattgcc agggttcgta cgctgttatg tgcgatgtgg ggcagatgat gtgtgaaaga      1920
     ggctgcgtcg tggcgctgtt gcaggagccg tataaccgct acggcggtgt gcgcggtttg      1980
     cccgcaaata tgcgggtatt tcctgacagc agaggccgtg ccgcagtcgt tgtgaatgac      2040
     cccggcatag agtgcacttt agtgaactct actgactggg gtgtatgtgt gggtttagag      2100
     gggatttttg gtaggttgta tgtcgtaagt atttattgca agttttccga gccattagat      2160
     ccgtaccttc agtacatgaa tgcggtacta ctccaggtga gtagcaatcc tgtcattctt      2220
     ggccttgatg cgaacgcgtc atccccctta tggttcagta agatgtccag gcttggtcct      2280
     ggccatcgga actatgaccg gggtgagacg ctggccgaat gggtgatcac ccaggatgta      2340
     caggttgtta acaagcctag cgagtggtac acattcaaca gtccgaacgg agcgagtgac      2400
     attgatgtta ctctcgcgaa tgaggcagca atgagagtgt gtgattttca atggaatgtg      2460
     ttggggggtc aaggtgtgag tgatcataat ccgattgaga ttgtggtcac ccgcgccgtg      2520
     gccctggaac cgaatgagag gcttaatggg tggtgctatc gtggtgcgaa ttgggccctt      2580
     catgggcatt atgtgagaga agcggcgacg caagtcccgt ttagcacctt ctgtgctatg      2640
     aatgtggatg agcaggttgc atgtgtgaca gagtgggtta cgagtgcgaa tgattccatg      2700
     tttgcgaggc accgtaaggt gactcgtaaa cgtgttaagt ggtggacgcg tgaactgcaa      2760
     gccgagaagc ggtctctccg gtctctgagg aagagattcc aaagggccag aaggactaat      2820
     gcggacggcg tggcccagct tagggatcag cttagtacta gggttcatga gtacaagcat      2880
     agggttttgc gagtgaaaga tgacgagtgg cgttctttcg tagatcgaaa taaacacgat      2940
     ccctggggtc gtgtttacaa gattctgcgg gagaatggga aggaggggtc cagggatatt      3000
     tgtgccctac gggttgaagg tcgagacctt ataacctgga aggattgtgt ggaatgtctt      3060
     ttgtccgaat tctttcctag ggaggatcgg cagcattcag tgcctgatgc agtgggtgat      3120
     gctgatcccc tcctgatgag cgagcttcag tgggctttca ctaagcttcg ctctgggaaa      3180
     gcgcctggtc tggatgggtt cacgggggaa atttgtaaaa gtgtctggaa gtccattcca      3240
     gatcacttgt acgaattata ctccaagtgt gtgagtgagg gggcctttcc gagtgcatgg      3300
     aagtgcacga gggtgagtgt gctcctaaag tcactcgata gggaccggag caatccgcgt      3360
     tcctttcggg gcatcagtct cgttccagtt cttgcaaaag ttctggagag agtgctggtg      3420
     gaacggctgc aggagagtgt ggggagccag atgtctgata ggcagtttgg cttccgtgaa      3480
     gggaggtgtg cggaggacgc ttggaggagc gttaaggact ctgtgagatc cagcaactcc      3540
     aagtacgtcc tcggtgtgtt tgtggatttt aagggggctt tcgattacct aagttgggct      3600
     agtgtgattc agaggttgaa cgagtgtggg tgccgggacg tagctctttg gaagagctat      3660
     ttctcgggac gaaatgcatg tgtggtggga gtgaatgagg ttgtttggaa ggatgtggct      3720
     cgtggttgcc cacagggctc catctgtggt ccatttatat ggaacctcat gatggatccc      3780
     ctgctgtggc agctcgagca agcgtggcag tgttgtgcgt atgcggacga cttgctcatc      3840
     ttggttgagg gccagtcgcg ttcgatgatt gaggcaagcg cttcagagtg cttgcgcatt      3900
     gttggccagt ggggcgacag tgtgggtgtc agcttggcaa gggataagac tgtgacaatg      3960
     ctgctgaaag gcagcttgtc caggtccccc gttgtcaggc tcgacggctc cagcataagg      4020
     tatgcgaaac aggtgaagta cctgggcgtg accgttggag aacggttgcg cttcgcacca      4080
     caccttgcca atctgaagga ccgattggtc ggtacggttg gacgattgcg ccgagttttg      4140
     agaagtgaat ggggcctcag cagaaaagct gctcgcacca tatatggtgg tctttttgtt      4200
     gcttgtgcag caagcggatc accttcgtgg tacgatgcag tcttggacgt taggggcaga      4260
     atgaaaattt taagtgtgca aaggttgatt ttgttggggt gtatgcctgt gtgtcgcact      4320
     gtctctacgg aggcattgca agttttgttt ggagcagttc cccttgactt ggagatacgg      4380
     cgtagagccg taagctacaa gctcaagaag gggctgccat tgctgcagga tgaatggctg      4440
     tttcgtgaaa tgtcgggagg gaacgtggag agtttagggc caagtgaatg gaagtctatg      4500
     ttgcgtgaat gtgtcctgtc ggactggcaa gcccgatggg ataatagtga gaatgggcgg      4560
     gctacttacg agttcattcc agatgtctcg tttgttgtcg atcgaccgga ctttggtttt      4620
     aaccttagtg ccgggttcct tttgactggc catgggtcgc tgaatgcatt cttgcatagg      4680
     cggaacttgg cgggcagtcc ggaatgccgg tgtggctctc ggcaggagac ctggaaacat      4740
     gttctctgtg agtgtccgtt gtatgatgat cttcgtgatc tgggcgggtt gggtgtggtt      4800
     caggctgggg gggactttga ctttagtcaa gtgctctcca cgagcgacag gattagtaga      4860
     ttgaatgtgt ttgcgagagc cgtattcagt cgtcgacgaa tgcgttgatt tgtagatgcc      4920
     gggatgtgtt aggggtgaat ggtgcgtgaa tcaggatcga gtgaataggt gtgtgcaaag      4980
     ttcgccgggt tttcgcccgc cgccggggtt accagtcccc gagcttcatg gtagccaaac      5040
     tgggagtgct tcgttgagtt gcacgaacct gaccagagga tttttctggt accacgggtg      5100
     atgaggattc acggagatgg tgctccaaat ccgccttgtc acaagccctt aggggttgtt      5160
     gggaacatag ctggccgtct tcgagcggtc tggtcactga ccagcagcga ttgccgcggt      5220
     ttgcggaaga ggaaggaata gtcctcgcct ccgaacagtg agaaagccat gtccatgaac      5280
     atggtggata aaactgtacc accttatgat ttggcttcgg ccacttcata atctattccc      5340
     agcagctatg tactatccag ggccaccgac ccgtgactgt tctggagtca aaatcggtag      5400
     tgtccttgtt ggcacggcgc ctgaccggag gctgtgataa tttctggtac cacgggtgcc      5460
     aggagcccac ggaacttgtt ccgtcctggc tatggtgagg ccccctaggg agctacgtgg      5520
     tggttgtggt ttaacacccg aatgcgggta gagcctctgg ctcgacgtgg agttgcgtta      5580
     tacaaccggg tgccgtgatc ccaaagatcg gaagaggttt agataggcct ccatccttaa      5640
     ccgaggatta agtcatgacc gaacagattg acttacattc ggtatccggc ggaacatggt      5700
     tccaaagggg cgctgattga cgcattgttt catatcccac gcccgagggg gccgtgagat      5760
     taagccaaca tggcaggtgc tcacgttaaa catatcagac tttca                      5805
//
ID   R1B_DSer    repbase;    DNA;    INV; 5906 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1B_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-5906
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2051-2051 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. It is inserted in 28S rRNA genes
CC   with TSDs of TGTCCCTATCT.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..1897
FT                 /product="R1B_DSer_1p"
FT                 /note="zinc finger."
FT                 /translation="MPRGRSVRSRSNSRSSAVSVASAASVDASSPSLRQAG
FT                 RKARERSISMELDTGELEPKRVDQRCSPTKKAAKELTFSCPGGLNGAGLEA
FT                 AHEANTVAPAAAPIVAPTAAAHAATFVAPAAVAVKLGAQAAVAAGHGAVLA
FT                 ELSATQRAVRDALLSGSVQTVSATMSRYDELVVALMLRVAELETRLTMPPP
FT                 STMTMPRPNATGIAAAPVAPVPVPRTKVRETWSCVVKGQDPELSSSQIAEK
FT                 VRKEVAPALGVRVHEVRELKRGGAIIRTPSASEASKVAASRKFAEVGLSVE
FT                 RNQAAKPRLTIFEVDTALTPEDFMEELYANNLKDEMTVADFKKSVHFASKP
FT                 WTAADGGTTNVTLEVSEKALAALDTGRVYIKWFSFRCRSQVRTYACHRCVG
FT                 FDHKVQECRLKVSVCRQCGQGGHVAAKCTNPMDCRNCRFKGLPSGHNMLSA
FT                 ACPVYSAVLTRVNARH"
FT   CDS           1887..5000
FT                 /product="R1B_DSer_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLDTNMSRLLQINCQGSYAVTCDVGQMMCERGCVVGL
FT                 LQEPCFRHGGVRGFPAEMRVFPDSRSHAAVVVNDPSVECTLVNSTDWGVCV
FT                 GLEGTFGRLFVVSIYCKFSEPIDPYLQYMNAVLLQVSSNPVILGLDANASS
FT                 PLWFSKMDRQTSGHPNYDRGETLAEWVITQEVQVVNEPSEWYTFDGPMGTS
FT                 DIDVTLVNEAAMRVCAFQWSVLGGHGVSDHNPIEIVVTHALARDANVWVNG
FT                 WRFRGANWALHGHYVREAAAQVPFSTFCAMNVDDQVACVTGWVTSANDSMF
FT                 ARHRKVTRKRVKWWTRELKAEQRSLRSLRKRFQRARRANAEGVAQLRDQLS
FT                 TRVHEYKHKVLRVKEDEWRSFVERNKHDPWGSVYKILRESGKESDRGVCAL
FT                 QVEGQMLTTWKDCVECLLSEFFPREDRQHSVPDAVGVADPLLVSELEWSFT
FT                 KLRSGKAPGMDGFTGEICKSVWKSIPDHLYELYGKCVSEGVFPSAWKCTRV
FT                 SVLLKSPDRIRSNPRSFRGISLVPVLAKVLERVLVERLQESVGSQMSDRQF
FT                 GFREGRSVEDAWRSVKDSVRSSNSKYVLGVFVDFKGAFDYLSWASVIQRLN
FT                 ECGCRDVALWKSYFSGRSACVLGVNEVVRKDVARGCPQGSICGPFIWNLMM
FT                 DPLLRQLEQVCKCCAYADDLLIMVEGRSRSRIEASAEECLRIVAQWGSSVG
FT                 VSLAMDKTVTMLLKGVLGSNSARRLTPPILRPPLVRLDGSSIRYAKQVKYL
FT                 GVTVGERLHFAPHLANLKDRLVSMVGKLRRVLRSEWGLSRRAVRTIYSGLF
FT                 VACAASGSPVWGGTALTVWGRTKLCRVQRVILLGCMPVCRTVSTEALQVLF
FT                 GAVPLDLEIRRRAVSYKLKKGLPLLQNEWLYREMSGGNVERLGPSEWKSML
FT                 HECVLSDWQARWDDSENGRVTHEFIPDVSFVADRPDFGFNLSSGFLLTGHG
FT                 SLNAFLHSRFLADSPECQCGSGDETWKHVLCECPLYDDLRDLGGLGVIQAG
FT                 GDFDFSQVLSTSDRVDRLNVFARAVFSRRRMR"
XX
SQ   Sequence 5906 BP; 1253 A; 1374 C; 1874 G; 1405 T; 0 other;
     tttgaagaga acggacgtgt ttctcggtcg ctccgtggaa aaaattaatt tcagctgaaa        60
     tacgctgcct atctggacaa ataaaagtgc gtttcgtgtg cgaactaagg tgctacaagt       120
     tgcgagttgt gcggtcgctg tagctaaccg attttcgcgg aaaattgcgt ttttccgtcg       180
     cgaaaatttg ccacgtgttt cgcgaaaaac aaaaagcttt aagctttggt gctgccaacg       240
     tggtgaaaca cgtgaaaaaa gcttaaaaca gctgtgaact ggtgctgcca accgcgtgaa       300
     aactgaaaaa acagctttta tcagctgttt ttggtgctgc catatcggca gaaaacggtg       360
     aagcagctgt ttgtggtgct gccatatcag cataaaacag tgaaacagct gagtgcggtg       420
     tgaccgtggt cacttcagca gttaagtgct atatttggcg aaacttttgg cgcgcgaata       480
     tcgatatata tcgaatttcg atttcgagtt taaaatgccg cgcgggagaa gtgtgcgcag       540
     tcggtcgaac agccgctcga gtgctgtaag cgtcgccagc gccgccagcg tcgacgcctc       600
     gtcgccttca ctccgtcagg cagggagaaa ggccagggag cgctccatct ccatggagct       660
     ggatacgggt gaactggagc cgaagcgagt ggaccagaga tgctcgccga cgaagaaggc       720
     cgccaaggag ctgaccttct cgtgccctgg agggctgaat ggtgctggcc tggaggccgc       780
     acatgaagcc aacaccgtcg cccctgctgc cgcccccatc gttgcaccca ctgccgccgc       840
     ccatgctgca acattcgtcg cccccgctgc tgtcgccgtg aagcttggtg cccaagccgc       900
     cgttgctgcc ggccatggag cagtcctggc cgagctgtcc gccacccaac gagccgtgcg       960
     tgatgcgctg ctgagtggca gcgttcagac ggtctcagcg acgatgagcc gctacgacga      1020
     gctcgttgta gcgctcatgc tccgggtagc cgaactggag acccggctca ccatgccgcc      1080
     cccctcgacg atgacgatgc cgcgccccaa cgccactgga atcgccgccg cccccgtagc      1140
     cccagttccg gtcccccgta ctaaggtgcg ggagacttgg tcctgtgtgg tgaagggaca      1200
     ggatccggag ttatccagca gccaaatcgc cgagaaggtg cgcaaggagg tcgcgccagc      1260
     ccttggagtg cgagtgcacg aagtccggga gctgaagcgt ggcggagcca tcatccgcac      1320
     gccgtcagca tcggaggcat caaaagtcgc cgcgtcccgc aagttcgccg aggttggact      1380
     ctctgtggag cggaaccaag ccgccaagcc ccgtctgacg atctttgagg tggacacggc      1440
     gctgacaccg gaggacttca tggaagagct gtacgccaac aacctgaagg atgagatgac      1500
     cgtggctgac ttcaagaagt cggtgcactt tgcatcgaag ccctggaccg cagctgatgg      1560
     aggcacgacg aacgtgactc tggaggtcag cgagaaggca ctggccgctt tagacacggg      1620
     tcgtgtctac ataaagtggt tcagcttccg ctgccggtcc caggtccgga cgtatgcctg      1680
     ccatcgctgc gtgggcttcg accacaaggt ccaggagtgc cggctgaagg tgagtgtatg      1740
     ccgccagtgc ggacaggggg gccatgtagc ggcgaagtgc accaacccga tggactgccg      1800
     aaactgccgc ttcaaggggc taccgtcggg gcataacatg ctctcggcgg cttgcccggt      1860
     ttatagcgcg gttttgacgc gtgtgaatgc tcgacactaa catgtctcgg ctcttgcaaa      1920
     ttaattgcca gggctcgtac gctgttacgt gcgatgtggg gcagatgatg tgtgagaggg      1980
     gctgcgtcgt gggcctgttg caggaaccgt gcttccgcca tggcggagta cgtggtttcc      2040
     ccgcagaaat gcgggtattc cctgacagca ggtcccatgc cgcagttgtt gtgaatgacc      2100
     ccagcgtgga gtgcacttta gtgaactcta ctgactgggg tgtgtgtgtg gggttagagg      2160
     gaacttttgg caggttgttt gttgtcagta tatattgcaa gttttccgag cctatagatc      2220
     cgtaccttca gtacatgaat gcggtactac tccaggtgag tagcaatcct gtcattcttg      2280
     gtcttgatgc gaacgcgtcg tcccccctct ggttcagtaa gatggacaga caaacgtctg      2340
     gccatccgaa ctatgaccgg ggtgagacgc tggccgagtg ggtgattacc caggaggtgc      2400
     aggttgtcaa cgagcccagt gagtggtaca cattcgacgg tccgatggga acgagtgaca      2460
     tcgatgttac tctcgtgaat gaggcagcaa tgagagtgtg tgcttttcaa tggagtgtgt      2520
     tggggggcca tggcgtgagt gatcacaatc cgattgagat tgtggtgacc catgccttgg      2580
     ctcgggatgc gaatgtttgg gttaatgggt ggcgctttcg tggagcgaat tgggcccttc      2640
     atgggcatta tgtgagagaa gcggcggcgc aagtcccgtt tagcaccttc tgtgctatga      2700
     atgtggatga tcaggttgca tgtgtgacag ggtgggttac cagtgcgaat gattccatgt      2760
     ttgcgaggca ccgcaaggtg actcgtaagc gtgttaagtg gtggacgcgt gaactaaaag      2820
     ccgagcagcg gtctctccgg tccctgagga agagattcca aagggccaga agggccaatg      2880
     cggaaggcgt ggcccagctc agggatcagc ttagtactcg ggttcatgag tacaagcata      2940
     aggttttgcg tgtgaaggag gacgagtggc gctctttcgt agaacgaaat aagcacgacc      3000
     cctggggtag tgtttacaaa attctgcggg agagtggaaa ggaaagtgac aggggtgtgt      3060
     gtgccttaca ggttgaaggc caaatgctta caacctggaa ggactgtgtg gaatgtttgt      3120
     tgtccgaatt ctttcctagg gaggatcgac agcactcagt gcctgatgca gtgggtgttg      3180
     ccgatcccct cctggtgagc gagcttgagt ggtcattcac caagcttcgc tctgggaaag      3240
     ctcctggtat ggatgggttt acgggggaaa tttgtaaaag tgtctggaag tccatcccag      3300
     atcaccttta cgaattatat gggaaatgtg tgagtgaagg ggtctttccg agtgcatgga      3360
     agtgcacaag ggtgagtgtg ctcctaaagt cacccgatag gatccggagc aatccgcggt      3420
     cctttcgggg catcagcctc gttccagttc ttgctaaagt tctggagaga gtgctggtgg      3480
     aacggctgca ggagagtgtg gggagccaga tgtctgatag gcagtttggc ttccgtgaag      3540
     ggaggagtgt tgaggacgct tggaggagcg ttaaggactc tgtgagatcc agcaactcca      3600
     aatacgtcct cggtgtgttt gtggatttta agggggcatt tgattacctg agttgggcca      3660
     gtgtgattca gaggttgaac gagtgtgggt gccgggacgt agctctttgg aagagctatt      3720
     tctcgggacg aagtgcatgt gtgttggggg tgaatgaggt tgttaggaag gatgtggctc      3780
     gtggctgccc tcagggttcc atctgtggtc cattcatatg gaacctcatg atggatcctc      3840
     tgctgcggca gctcgagcag gtatgcaagt gttgtgcgta tgcggacgac ttgctcatca      3900
     tggttgaggg ccggtcgcgt tctaggattg aggcaagcgc cgaagagtgc ttgcgcattg      3960
     ttgcccagtg gggcagcagt gtgggtgtta gtctggcaat ggataaaact gtgacaatgc      4020
     tgcttaaagg cgtattgggc agtaattctg cgaggcggct tacgcctccc attcttagac      4080
     ctccacttgt caggctagac ggctccagca taaggtatgc gaaacaggtg aagtacctgg      4140
     gtgtgaccgt tggtgaacgg ttgcacttcg caccacacct tgccaatctg aaggaccgac      4200
     tggtcagtat ggttggaaaa ttgcgccgag ttttgagaag cgaatggggc ctcagcagga      4260
     gagctgttcg caccatatat agtggtcttt ttgttgcttg cgcagcaagc ggatcacctg      4320
     tgtggggcgg cacagccttg actgtttggg gcagaacgaa actttgtaga gtgcagagag      4380
     ttattttgtt ggggtgcatg cctgtgtgtc gcactgtctc tacggaagca ctgcaagtcc      4440
     tgtttggagc agttcccctt gacttggaga tacggcgtag agccgtaagc tacaagctca      4500
     agaaggggct gccattactg cagaatgagt ggctgtatcg tgaaatgtct ggggggaacg      4560
     tggagagatt agggccaagt gaatggaagt ctatgttgca tgagtgtgtc ctgtcggact      4620
     ggcaagcccg atgggatgat agtgagaatg ggcgggtcac tcacgagttc attccagatg      4680
     tctcgtttgt tgccgaccga ccggactttg gttttaacct cagttccggg ttcctgttga      4740
     ctggccatgg atcgttgaat gcattcttgc atagccgatt cctggcagac agtccggaat      4800
     gccagtgtgg ctcgggagac gagacctgga aacatgttct ctgtgagtgt ccgttgtatg      4860
     atgatcttcg ggatctgggc gggttgggtg tgattcaggc tgggggggac tttgacttta      4920
     gtcaagtgct ttccacgagc gatagggttg ataggttgaa tgtgtttgcg agagccgtat      4980
     tcagtcgtcg acgaatgcgt tgatttgtag atgccgggat gtgttagggg gtgaatggta      5040
     cgtgaatctg ggtcgagtga ataggtgtgt gtaaggttcg ccgggctttc gcccgccgcc      5100
     ggggtgacca gtccccgagc ttcatggtag ctgaaactgg gagtgcttct ttagttgcac      5160
     gaacctgacc agaggatttt tctggtacca cgggtgatga ggataaacgg agatggtgct      5220
     caagatccgc cttgtcacaa gccctttggg gttgttggga acatagctga ccgccttcga      5280
     gcggtctggt cactgaccag cagcgattgc cgcggtttgc ggaagaggaa ggaatagtcc      5340
     tcgcctccga acagtgagaa agccatgtcc atgaacatgg tggataaaac tgtaacacct      5400
     tatgatttgg ccttggccat ctcataatct attccgagca gctatgcact ttttatccgg      5460
     ggccaccgac ccgtgactgt tctggagtca aaatcggtag tgtccttgtt ggcacggcgc      5520
     ctgaccggag gctgtgataa tttctggtac cacgggagcc agcgcccacg gaacttgttc      5580
     cgtcctggct atggttgagg ccccttaggg agctacgtgg tggttgtggt ttgtcaccca      5640
     aatgcgggta gagccttcgg ctcgacgtgg agttgcgtta tacaaccggg tgccgtgatc      5700
     ccacagatcg gaagaggttt agataggcct ccatccttaa ccgaggatta agtcatgacc      5760
     tgaacagatt gactgacatt cggtatccgg cggaacatgg ttccaaaggg gcgctgattg      5820
     acgcattgtt tcatatccca agcccgatgg ggccgtgaga ttaagccatc gtggcaggtg      5880
     ctcacgttaa accattccga ctttca                                           5906
//
ID   R1B_DVi     repbase;    DNA;    INV; 4799 BP.
XX
AC   .
XX
DT   10-JUN-2011 (Rel. 17.09, Created)
DT   10-JUN-2011 (Rel. 17.09, Last updated, Version 1)
XX
DE   R1 non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1B_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4799
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from fruit fly.";
RL   Repbase Reports 12(9), 1955-1955 (2012).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. It constitutes tandem arrays with
CC   TSDs (ATATGTTTTGTTTTGTCCCTATCTACT) whose last 14-bp sequence is
CC   identical to that of typical R1 TSDs. It is more similar to
CC   R1_DWi than R1_DVi.
XX
FH   Key           Location/Qualifiers
FT   CDS           371..1138
FT                 /product="R1B_DVi_1p"
FT                 /translation="MDARSVAGTASSAESVASVAADGRRRVGRGRGRSTIM
FT                 EEVAPTLGVRVHEVRELKRGGAVIRTPSKGELNRVVANTKFAEVGLNIQPN
FT                 KGLRPRITVFDVDTSILPEVFMEELYTNNFKEEMTAAVFNKAVHLESKPWS
FT                 VTDGASVNLTLEVDERALATFEKTGRVYIKWFSYRCRSLVRTYACHRCVGF
FT                 DHKVSECRLKQDVCRQCGQMGHIAAKCANPVDCRNCRFKGVPSGHYMLSGS
FT                 CPIYGAVLARVQAKH"
FT   CDS           1141..4227
FT                 /product="R1B_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFSFIQANCGRGRAACIDIGVRMRDHGHSFALLQEPY
FT                 SDVVGRITGFPAGMRVFGSHAVEDRKRSAAVIIDDPDAICLPVESLTTEAG
FT                 VCVRVTGKHGTVYLTSIYCHAHADLTRILSYMDTILLLASSTPVILSLDAN
FT                 AVSPLWFSKRHEFFRGQLNYRRGEQLDEWILGSRANVLNQVSEVYTFDNGR
FT                 GQSDIDVTIVNEAASTWAAYDWSVDEWDLSDHNMITVVTSPSPANAVESYA
FT                 PVPSWKLANANWRLFDSELVEEIEEHLSQEDIRMLPLDTAVSALRLAVQSV
FT                 CDRVLGRRPSRAQGKVKWWTAELSTKRREVRRLRRRLQDARRRGHESAPYL
FT                 AAHLRTAVREFKTLILKTKEENWRRFVGDHRDDPWGHVYRICRGRKRSTDL
FT                 RCLRSDDGLVVTWHDCASLLLHSFFPVAESSEDIVIPDEAAPALEAFEVGV
FT                 CVARLKSRRSPGLDGITGGICKAVWRAIPEHLTALYSRCLAEGYFPLEWKC
FT                 PRVVALLKGPDKDRSDPASYRGICLLPVFGKVLEGIMVDRMKEVLPDGNRW
FT                 QFGFRPGRCVEDAWKHVMTSVAASQAVYVLGLFVDFKGAFDNIEWSAAMRR
FT                 LIDAGCKEASLWRSFFCGRKARMTSRCGEVEVEVTRGCPQGSISGPFIWNT
FT                 MMDVLLQRLEPLCTFSAYADDLLVLVEGRSRAELERRAAELMSVVGTWGAE
FT                 VGVSISTSKTAMMMLKGRFAVSRPPVVRFAGASLPYVDKYRYLGITVGERL
FT                 NFQPHIAGLRDKLTGVVGALGRVLRVDWGLSPRARRTVYAGLMVPCALFGA
FT                 SVWYSAVRGESGARRRLISCQRVMLLGCLPVCRTVSTVALQVLAGAPPLDL
FT                 VAKQLAIRFKVKRAHPLEDSDWLFGLDVANLDQRRMKALLDEGMCSEWQRR
FT                 WDSDEHGRPTHQFIPDACFVYSRRDFGFGLHAGFLLTGHGSLNAFLHQRSL
FT                 SATPACQCGAEHEDWQHVLVACPLYADLRDLDGLGVRREGTRWDFSRVLET
FT                 PERLLLLEMFARAVFARRRRGME"
XX
SQ   Sequence 4799 BP; 1069 A; 1172 C; 1527 G; 1031 T; 0 other;
     cagtttgttc cagacgatcg tcgcgagcag acgtgtcgcg gagttatttt tgtgtcgaaa        60
     acaaaagata aggtgcaggt gttcgctttg gcgtaaacaa agccataaaa cttaacggga       120
     caacttgcgg taaatagcaa taaaactgct tgtgcccaag acagcgcgaa agcagtgcga       180
     agcagtgcaa acgcgttcac tgctttataa gcagtgcaca tagtgcgaag cagtgcggaa       240
     ttttaaaaag cagtgcaaag ctgagtaaaa cagtgcaagc agcgcaaata gagcagtgcg       300
     gttcgtcaac caggtaagcg gtttgtgtcc gggttatcgc gtggtgttgc cgacggaggg       360
     cgccacgaca atggacgcca gaagcgtggc cggcacggcg tctagtgccg agtcggttgc       420
     cagcgtcgcc gccgatggaa ggaggagggt ggggagaggg aggggccgta gcacgatcat       480
     ggaggaggtc gcacccaccc ttggagtgcg ggtgcacgag gtgcgggagc tcaagcgagg       540
     cggcgcggtc atccgcacac catcgaaggg cgagctcaac agagtggtgg caaacaccaa       600
     gttcgcggag gttggactca acatccagcc gaacaaagga ttgaggccga ggataacggt       660
     gttcgatgtg gacacatcga tcctgcccga ggtgttcatg gaggagttgt atacgaacaa       720
     cttcaaggag gagatgacag cagcggtgtt caacaaggca gtacaccttg agtcgaagcc       780
     gtggtccgtc actgatggcg ccagcgttaa tctgacgcta gaagttgacg agagggccct       840
     ggcgactttt gaaaagaccg gacgggtcta tataaagtgg ttttcatacc gatgccggtc       900
     cctcgtccgc acctatgctt gccataggtg tgtcggcttc gaccacaagg tgtccgagtg       960
     ccgccttaag caggacgtat gccgacagtg tggacagatg gggcatatcg cagccaagtg      1020
     cgcaaatccg gtggactgcc ggaattgccg cttcaagggg gtaccctcgg ggcattatat      1080
     gctttcgggg tcttgcccga tttatggcgc agtgttggcg agggtgcaag ctaaacatta      1140
     atgtttagtt tcatccaagc caactgtggc cggggccgcg ctgcgtgcat cgatatcggt      1200
     gtacgtatgc gtgaccacgg ccactccttt gcgctgctgc aggagccata ctcggacgtc      1260
     gttggaagga ttacgggctt cccagccggg atgcgcgttt tcggaagcca cgctgtcgag      1320
     gaccggaaaa ggagcgctgc tgtcatcatc gacgacccag atgccatctg cctaccagtg      1380
     gagtcgctga ccaccgaggc tggagtatgt gtgagggtca caggtaaaca tggcactgtt      1440
     tacctgacct ccatatactg ccatgctcat gctgacttga caaggatatt gagctatatg      1500
     gataccatac tgctactggc gagcagtaca ccggtaattc tcagcctgga cgcaaacgct      1560
     gtgtctccct tgtggttcag caaacggcac gaattctttc gtggccagct gaactacaga      1620
     agaggcgaac agctagatga gtggatactc ggaagtcgtg ccaacgtgct aaatcaagtc      1680
     agcgaggtgt acacgttcga taatggaaga ggacagagcg atatcgacgt aacaatcgtg      1740
     aacgaagcag cgtctacgtg ggccgcgtat gactggagtg tggacgagtg ggatttgagc      1800
     gaccacaaca tgattactgt tgtgacttcg ccatccccag caaatgcagt tgagagctat      1860
     gctcctgtgc cgtcctggaa gctcgcgaat gctaattggc gattgttcga ctcggagctg      1920
     gtagaggaaa tcgaggagca cctttcccag gaggatatta ggatgttgcc gttggatacc      1980
     gcggtgtctg ccctacgcct tgccgtacag tctgtgtgcg acagagtgtt aggccgcaga      2040
     ccgtcgagag cccagggaaa agttaaatgg tggactgccg aactgagtac caaacgccgg      2100
     gaggtcagga gactgaggcg gaggctccag gatgcacggc gcagaggtca tgaatctgca      2160
     ccgtatcttg cagctcatct gcggacagct gtccgcgagt tcaagacgct catcctgaag      2220
     acgaaggagg aaaactggcg acgcttcgtt ggagaccaca gagacgatcc gtgggggcac      2280
     gtctaccgga tatgccgggg acgaaagcgg tctaccgatt tgaggtgcct tcgttcggat      2340
     gacgggctgg tcgtaacatg gcacgactgc gcgagtctcc tcctccacag cttttttcca      2400
     gttgcggagt cgagtgaaga catcgtcatt ccggacgaag ctgctccagc gctcgaagct      2460
     ttcgaggttg gagtatgcgt cgctcggttg aagagcaggc gctctcccgg gcttgacggc      2520
     attacaggtg ggatctgcaa ggcggtatgg cgtgccatcc ccgagcacct gacagcgttg      2580
     tattcccgct gcctggcaga aggatacttt ccccttgagt ggaagtgccc gcgtgtggtt      2640
     gcgctcctca agggccccga caaggatagg agcgatccag cttcctatcg gggcatctgc      2700
     ctgttgccag tgtttggcaa agtgcttgag gggatcatgg tggatcgaat gaaggaggtg      2760
     cttccggatg gaaatagatg gcaatttggc tttcgacctg gacgctgtgt cgaggacgcc      2820
     tggaagcacg tgatgaccag cgttgccgcc agccaggcgg tatacgtact tggtctcttc      2880
     gtggacttta aaggcgcctt tgacaacatt gagtggagcg ccgcgatgcg ccgcttgatc      2940
     gatgcgggat gcaaggaagc cagcttgtgg agaagcttct tctgtggcag gaaagccagg      3000
     atgaccagca gatgtggcga agtcgaggtg gaggtcacgc gagggtgtcc ccagggatcc      3060
     atcagtgggc cgttcatctg gaacaccatg atggatgtcc tgctccaacg cctggagccc      3120
     ttgtgcacat ttagtgcata tgccgatgac ctgctggttc ttgtcgaggg aaggtcgaga      3180
     gctgaactgg agcgtcgagc agctgagctg atgtccgtcg tgggaacttg gggagccgag      3240
     gtcggagtgt cgatctcaac cagcaagacg gcaatgatga tgttgaaggg gcgttttgcc      3300
     gtttccaggc cgcccgtggt acggtttgca ggagcaagcc taccatatgt cgacaagtac      3360
     cggtaccttg gcatcacagt cggtgaacgg ttgaattttc agccgcatat cgcaggattg      3420
     cgggataaac tgactggagt cgtcggagca ttaggccgcg tgctacgggt tgactggggc      3480
     ctcagtcccc gagccagacg cactgtatat gccggactca tggtgccttg cgcactgttt      3540
     ggtgcctcgg tatggtattc cgcggtcagg ggagagtcgg gggccaggag gcgcctcatc      3600
     tcctgccaaa gagtcatgct cttaggatgc ctaccggtat gccgtacagt gtccaccgtg      3660
     gcactgcagg tgcttgctgg agctccgccg ttggatttgg ttgccaagca attggcaatc      3720
     agattcaagg tcaagcgtgc ccacccgctg gaggatagtg actggctgtt cggtctagat      3780
     gtggcaaatc tagaccagag gcggatgaag gcgttgctgg acgaaggcat gtgctccgag      3840
     tggcaacgga gatgggatag tgatgagcac ggtcgaccga ctcatcagtt tatcccggac      3900
     gcatgcttcg tctacagccg gcgagacttt ggattcggtc ttcacgctgg attcttgctg      3960
     acgggccacg ggtcgctaaa tgcatttctg catcagagaa gtctgagtgc aacgcccgca      4020
     tgtcaatgcg gtgcggagca tgaagactgg cagcacgtgc tagttgcttg cccactctat      4080
     gcagatctgc gagacctcga cggacttggt gtcaggagag aaggtacccg ttgggacttt      4140
     tcccgggtcc tggagacacc agagcggctg ctactcctgg agatgtttgc gcgagcggtg      4200
     tttgctagac ggcggcgagg gatggagtga agtgcaacca cacagggccg accagtgccg      4260
     ggctgacgtt agccaaaact gggagtggca tggactgtgt cacggagccg aacagagctt      4320
     aatctggtag acaaacccca atttggggta agtcgaacaa tggatgaccc attccgtgtt      4380
     tgtcgtcaac aaaactgggg agtggcaatt gctacgaaca gccgaccaaa gctgtaattt      4440
     ggtaccacgg gtaaccagga gcccacggaa ctcgttccgt cctggttagt tggtgcggcc      4500
     cttcggggag tatcgtggtg gctgtggttc gatacccaat tgtggggaga gttttcactc      4560
     ggcgtggagt tgcgtgtcaa ccgggtgctg tacccataga ccagcggagg tatagataga      4620
     cctcacctcc caccaagggg gaatgtcatg ttcgacaagc atgcattcaa tttggtaccg      4680
     aaggggcact gcacatgcag tgtcttggag gggcgctagt ccgacgcttt gtttcggctc      4740
     gctgtatttc gaataccgtg gtagtaaacc cctacggggt acacgccacg ttaaacaaa       4799
//
ID   R1B_NVi     repbase;    DNA;    INV; 6140 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   vitripennis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1B_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6140
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           541..2376
FT                 /product="R1B_NVi_1p"
FT                 /translation="TVPRTERPPYGLALQGGRYELDVMTNKNQASDKTKEG
FT                 KGGKENVRRSRRRVSSASSASSGDRNRTPYRGPRSRSQSRSGTGLRDEPSD
FT                 ALDPKSKKEHQRREKAREKDLRDQELERAILKERGMEAGKVTEERGMETEE
FT                 GVMETEDIPEPTAQPENEVIVEEKEEYAVKNKRTLKRKTDAEEKRLSDEDK
FT                 KMKKMKNRQKRAEARAEITAKLKEEAKDRQRKKVDKRDEKEKSLQLLKELK
FT                 EATEKLAGMKDVNLIETESDGESEEEDGEGRVKESVHASALETVGQLANEI
FT                 RLFMLSQLNVNKSVCVTVFEKLGKMEQIMNGLVCENEGLKSKLECMGAKEG
FT                 ANANVGASSASAAVPRAAPATPAVRPSYAVIVRGKENESSDMVRKKIVDEV
FT                 SKNVDVRVKAVRKVRDGVVVETVSVNECNRLLNEKQFERVGLQVTEARRFG
FT                 PKVILYDVPCSMTDETLLTEVYQKNMDGCVSERDFHESVKVLFRSGKKGMD
FT                 VSNVILEVSPRVKMRLLGQSRVYVKWMSFRVNEFERINRCFNCFDFGHVAR
FT                 QCKRERVCVRCCKSGHVGSECREQFNCGNCARRGMPAGHPVTSSECPGYKM
FT                 RLRWQKERTLQDGE"
FT   CDS           2342..5506
FT                 /product="R1B_NVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="GGKKKGHSKMANREARFLQLNCQRSMNVMSDLSECIV
FT                 NEGIDVCLLQEPYFAHGKVCGLPSGMRVFWSRSGLSAIVVNDLNCVCMLIE
FT                 ELVSENSVCVSVKGEYGEIFMISLYSKYDGEIENDIEYLEKVFECLRGKRV
FT                 LVCMDANASSELWFSKGVYVGKPRGNRGEKLCEWIAGSEWSVDLLNEPSEW
FT                 YTFDGPRGQSDIDITLAGGFENECEFTWSVMCEWSLSDHNPIMIRMRMNGG
FT                 RENEANVDLRWRMKTNKWSKYTKRLREIAYEFGYGEYVELCAREKVKKMDE
FT                 WITRVNDECFERVSVHNNKVVWWNKELERMKKNVCKLRKTYQKMRCKNDER
FT                 MEESRNEWKKCETQYARKLKEEKNDDWKKYMSTKGNQKPWKARNICIGKRR
FT                 EELASLRKAGGGLTTSWAETADLLLNEFFPPDDGVPAPEVQELFLDVNDRE
FT                 YEWNEISMAVKKMNMRKSPGMDGIMNEMILRVHRAIPGFMKEMYDSCLRES
FT                 YFPNEWKRAKVVVLLKSVDKDKASPRSYRPISLLPGLGKVLERMMVERLTK
FT                 IVNGRWSEYQYGFRNGRSCEDAWNKMKESVNASEHKYVCGVFVDFKGAFDN
FT                 LLWRTIMATLEEYGCGGMDLEMWKSYFTDRRVCMKNSMEEVWKQVSRGCPQ
FT                 GSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVIN
FT                 EKMEIVYKWGEKMGVSVSEEKTVCMLLKGKYVTSNRAVRVSKTINVYKRIK
FT                 YVSCFKYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAAS
FT                 HLVLRGTFLPQVSYCASAWYEVLKYEYGRNALNAAMRYVMYACLNVCRTVS
FT                 TEAMQVLTGWLPWDLECLKRANVYKVRKGLSMNEMDVVKNEEVESMSVIKL
FT                 ERLVDERVYEIWQERWDVSMKGRVTARFIKDVKYAGRSRSFEPDRWVVNIL
FT                 TGHGTLNAFLHKRGLSESASCMCGDVSEDWEHVLCRCSMYESFRNLDEMGV
FT                 TVCVNGEYEFTGVLSSNVTYGKMCEFINRAYEMRESVRRRLNLELDVNG"
XX
SQ   Sequence 6140 BP; 1797 A; 970 C; 2000 G; 1373 T; 0 other;
     ccccctcacg atcactggct tgtcgcgccg agggggcccg agttcaggag tttgcgcaag        60
     cgaactcctg ttccgctaaa gtgatccaaa cccaggaagt ggtggaggat ccggtgcttt       120
     ggctagccga ccccactctc aggaaccgat ccgcgaaagc ggaaaggaga ccctgagaag       180
     tgtgggaacg caaaccgaag cgccggatcg gaagccaccg ggcttgacaa ccccggggtt       240
     cctagtccca agcgatgagc gccgtcgctt ggcccgtaaa ccttgcaccg tcttcaacaa       300
     ccttcgcagg gcgtggcgtt ggtacgttgg cggtgtgggg agcgggggct cggcttaacc       360
     gcccggccgc gaggtggggt cctctataaa acccccccaa tcctacgctc aggtgggtgg       420
     ctatgggatg aatggctcct gggtgaggag tcccaagccc accaaccccc gttggctgtg       480
     gcggctgacg ggatgtactt gccttaccgg ggtagggccg taaccccggt ggacctatag       540
     accgtgccta gaactgaacg ccccccgtac gggcttgcct tacaaggggg gcggtacgaa       600
     ctagatgtca tgacaaataa aaatcaagcc tcggataaaa caaaggaggg taaaggagga       660
     aaggagaacg tgaggaggtc taggaggagg gtttcctcag ctagttccgc ctcatcgggt       720
     gatcgaaacc gtacgcccta tcggggaccc cgttcacgat ctcaatctcg atcgggaacg       780
     ggtcttcgag atgagccgag tgatgctctg gacccaaaat ccaaaaagga gcatcagaga       840
     agagagaagg cacgagagaa ggacttgaga gatcaggagc ttgagagagc cattctgaag       900
     gaaaggggta tggaagcggg taaggtaacg gaagaaaggg gtatggaaac ggaggaaggg       960
     gttatggaaa cggaggacat ccccgaaccg acggcgcagc cggaaaatga ggtgatagtg      1020
     gaagaaaagg aagagtatgc tgtgaagaac aaaagaacgc ttaaacggaa aactgatgca      1080
     gaggaaaaaa gactgagtga tgaagataag aagatgaaga aaatgaaaaa tagacaaaaa      1140
     agggcagaag caagagcaga aataacggca aaactgaagg aggaggcaaa agatagacag      1200
     agaaagaaag tagacaagag ggacgagaaa gagaaatcct tgcaactctt gaaggagctg      1260
     aaggaagcga cagagaaatt ggccggcatg aaagatgtga acctgatcga aactgagagt      1320
     gatggagaaa gtgaggagga ggacggcgaa ggaagagtga aagagagtgt gcatgcgagt      1380
     gcgctcgaga cggtgggaca gctggcaaac gagattcgtc tgtttatgct gtcccaactg      1440
     aatgtgaata aatctgtgtg tgtgactgtg ttcgaaaaac tagggaaaat ggagcaaata      1500
     atgaatggtt tggtatgcga gaacgaagga ctgaaaagca agctcgaatg tatgggtgcg      1560
     aaggaagggg cgaatgcaaa tgttggtgcg tcaagtgcaa gtgcggcagt cccgcgtgct      1620
     gcgcctgcta ctccagcagt aaggccaagc tacgcggtga ttgtaagggg gaaagagaat      1680
     gaaagcagcg atatggtacg aaagaagatt gtggatgaag tcagtaagaa cgtagatgta      1740
     agggtgaaag ctgtgagaaa ggtaagagat ggtgtggttg tcgaaacggt gagtgttaat      1800
     gaatgcaata ggttgttgaa tgagaagcag tttgagagag tgggtttgca ggtcactgag      1860
     gccaggaggt ttggtccaaa ggtcatatta tatgatgtac catgtagcat gacggatgag      1920
     accctcctga ctgaggtgta ccagaaaaat atggatggat gtgtaagtga acgcgacttt      1980
     catgagagtg tgaaagtact gttcagaagt ggaaagaagg gtatggatgt gagtaatgtt      2040
     atactggaag tcagtccacg agtgaaaatg agattgctag gtcagagtag agtgtatgtg      2100
     aaatggatgt cttttagagt gaatgagttt gaaagaatta acaggtgttt caattgcttc      2160
     gactttgggc acgtggccag acaatgtaag agagaaagag tatgtgtgag atgttgtaag      2220
     agtggacatg tgggaagtga gtgtagagag cagttcaatt gcggtaactg cgcgaggaga      2280
     ggtatgcctg caggtcatcc cgtgacatcg tcggagtgtc caggatacaa aatgcgactg      2340
     aggtggcaaa aagaaaggac actccaagat ggcgaataga gaagcgcggt ttctgcagct      2400
     gaactgccag cgtagtatga atgtgatgag tgacctgagt gagtgtattg tgaatgaggg      2460
     aatagatgta tgtctgctcc aggaaccata ctttgcccac ggtaaggtat gtggccttcc      2520
     atcgggcatg agggtctttt ggagtagaag cggattgtct gcaattgttg tgaatgacct      2580
     aaattgtgtg tgtatgttga ttgaggaact ggtgagtgag aatagtgtgt gcgtgagtgt      2640
     gaaaggggaa tatggggaga tctttatgat ctctctatat agcaaatatg atggtgaaat      2700
     tgaaaatgat attgagtacc tggaaaaagt gtttgagtgt ctgagaggca aacgggtgtt      2760
     ggtttgtatg gacgcgaatg cctcgagtga actgtggttt agcaaaggtg tgtacgtggg      2820
     caagccgaga gggaacagag gggaaaaact gtgcgaatgg attgctggat ctgaatggag      2880
     tgtggatctg ctaaatgagc cgagtgaatg gtatacgttc gatgggccca gggggcagag      2940
     tgatatagat atcactctgg ccgggggctt tgagaacgag tgtgaattta catggagtgt      3000
     gatgtgtgaa tggagcctga gtgaccacaa ccccattatg attcgcatga ggatgaatgg      3060
     tgggagggag aatgaagcga acgtggattt gagatggcgt atgaaaacaa ataaatggtc      3120
     taagtatacg aaaaggttga gagaaatagc gtatgaattt ggatacggcg aatatgtgga      3180
     actgtgtgcg agggaaaaag tcaaaaaaat ggatgaatgg attaccagag taaatgatga      3240
     gtgctttgaa agagtgagtg tgcataataa taaggttgtg tggtggaaca aggagctgga      3300
     gagaatgaaa aagaatgtgt gtaaactgag aaaaacttat cagaagatgc gttgtaagaa      3360
     tgatgagcgt atggaggaat caaggaatga atggaaaaag tgtgaaacac agtatgcaag      3420
     aaagttaaag gaagagaaaa atgatgactg gaagaagtac atgagcacca aagggaacca      3480
     gaaaccctgg aaagccagaa atatttgcat tggaaagagg agggaggagc tcgcgagttt      3540
     gaggaaggct ggtggaggtc tcacgacgtc gtgggctgaa acagccgacc ttcttctaaa      3600
     tgagttcttc cctccggatg atggggtccc ggcccctgaa gtgcaggaat tgtttttgga      3660
     cgtgaatgat cgagagtatg aatggaatga aataagtatg gctgtgaaga aaatgaatat      3720
     gaggaaatcc ccgggtatgg atggtattat gaacgaaatg attttgagag tacatcgagc      3780
     aattcctgga tttatgaaag agatgtatga ttcttgcctg cgtgaaagtt atttcccgaa      3840
     tgaatggaag agagcaaaag tggttgtttt actaaaaagt gtggacaagg ataaagcttc      3900
     ccccaggtcc tacagaccaa taagtctttt gccgggcctg ggaaaagtgc tagagcgaat      3960
     gatggtagag aggttgacga agatagtgaa tggaagatgg agtgaatatc agtatgggtt      4020
     tagaaacggt aggtcgtgtg aggatgcttg gaataaaatg aaagagagtg tgaacgcatc      4080
     agagcataag tacgtctgcg gtgtgtttgt ggacttcaag ggggcctttg ataatctctt      4140
     atggagaaca atcatggcaa ccttggagga gtatggatgt ggtggcatgg atctggaaat      4200
     gtggaaaagc tattttacgg ataggagggt gtgcatgaag aatagtatgg aagaagtatg      4260
     gaagcaggtt tccagagggt gcccccaagg ttctattgga ggtccaatac tctggaacct      4320
     aagtatgaat ggaatgttga ttgagttggc tggaagtggt gtaagtgtgt gtgcatttgc      4380
     ggatgatgtt gcgatactgg ctgaaggaaa cacgaggaaa gaggttgaga gggtcattaa      4440
     tgagaaaatg gaaatcgtat ataaatgggg ggagaaaatg ggtgtgagtg tctcagaaga      4500
     gaaaactgtg tgcatgttgt taaaaggaaa atatgtgacg agtaacagag ctgttagagt      4560
     aagcaagacc ataaatgtgt ataaaaggat aaagtatgtg tcgtgtttta aatatttagg      4620
     tgtgaatgta actgagggta tgggctttgg agagcatgta cgagggatga aagtaaaagt      4680
     ggccaagggg gtgcaaaaat taaagcgtgt gcttagaaga gactggggat tgaggcgtgc      4740
     cgcgtcgcac ttggtgctaa gagggacgtt tttgccccag gtctcctatt gtgcgtctgc      4800
     atggtatgaa gtactgaagt atgaatatgg aaggaatgcg ttgaatgctg cgatgagata      4860
     tgtgatgtat gcgtgtttga atgtatgtag gacagtctcc acggaggcaa tgcaggtctt      4920
     aactggatgg cttccgtggg atttggagtg cctaaagaga gcaaatgtgt acaaggtgag      4980
     aaagggatta agcatgaacg aaatggatgt ggtaaagaat gaggaagttg agagtatgag      5040
     cgtgattaaa ttagaaagat tggtggatga acgagtatat gagatatggc aagaaagatg      5100
     ggatgttagt atgaaaggac gtgtgactgc gagatttatt aaggatgtta aatacgcggg      5160
     gaggagtagg agctttgagc ccgatcgatg ggtagtaaat atcctgaccg ggcacggaac      5220
     cctaaatgcc ttcctgcaca agagaggttt gagtgagagc gcttcgtgta tgtgtggtga      5280
     tgtaagtgag gactgggagc atgttctatg tagatgtagc atgtatgaat catttaggaa      5340
     tttggatgaa atgggtgtga ctgtatgtgt aaatggtgag tatgaattta ctggtgtatt      5400
     aagctcgaac gtgacgtatg gaaaaatgtg tgaatttata aatagagcgt atgaaatgag      5460
     agagagtgtt agaagaagat tgaatttaga gcttgatgtg aatggatgag gtgtctctat      5520
     atgaggggca cctaaaacgc agggaggtac gttctgtgcg tgcacggagc ggacctttgg      5580
     gtttggcgca cccacgtacc cgagctggtt tgccggtgcc gaggtggcaa gacctctacc      5640
     ggccctcata ccagaggcta aacggtacca cgggcggccg ggaggcccgc gggggggact      5700
     acgtccgccc cgtcccggtc actgggtttg gactcgtggt ggcagtggtt acagcccata      5760
     tcgctcaggg ctagaggtcg gggttgagtg aaaggctcct taggtgctct gcaccatcgg      5820
     agtctggaac tcttctctgg cctcgacgtg tgagttgcgg tctcaactcg gggagcggcc      5880
     tgcttagccg ttagggattg gatgggtccc ggcccccacc gagggttccc tgcggccttg      5940
     ctagccaagg ggagaatcgg tagtcgcggc gaagctaagg gtgcggtttc gggtgaaatg      6000
     cttgtgcatt cctccttaaa ccatgctcaa ggtggagccg cgacgcgttg gccgagcgta      6060
     tctcggcccc gcgccccatg gggggccgtg tgggtgagca caagcaggaa ccgcacgtta      6120
     aatcatctag ggcttctcaa                                                  6140
//
ID   R1C_NGi     repbase;    DNA;    INV; 6405 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia giraulti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1C_NGi.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6405
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..2368
FT                 /product="R1C_NGi_1p"
FT                 /translation="GRTASSDRRSSQVEKSLPYGGPGELCAGRRRRDGVRC
FT                 GCPGSAWGRGRTNQMDTIKTQLRKMTRSSKGVGCSREDFLKKDSKGGGGDS
FT                 EDTRSSVYSADSLRERSRSRSPTGLKSTKDFELVESKAARKQRKAEEKRRR
FT                 RENANASVNDRMNKSVSCSVQDVSKKVNVSRSENDVSKTGATESMEVGMEE
FT                 CASMKESANVKRTVKRNAVGQDRFKGAKGELFVVCENLRQPLKRIKREVAD
FT                 AEVPVDSTSVSVNESAEVSEVVVDELRAVTDGLRGHLLSDANKFTKWQANS
FT                 VLDHASKFEGLVQRLMLENARLRGELSAHTGIKADLVNVRETVRRVDESMN
FT                 VVKTRVAAASRAPPAAAGAAPGKGSGANVGPKPSFALVVRGANEQLTCDEV
FT                 RRRMIESTSEDVNVRVRTIRPARGGGVVVETASDGERKALSRCAGLAEAGL
FT                 RAAEPKVMDPRVIVYDVPNEMTNEHLLRGMYDKSLSEHVSVNEFTKRVKIV
FT                 RRVDGQRLGNVIVELPLPWRDRLLQDGRVFVGWNSFKCCSYERVMRCFRCQ
FT                 GYDHRAKECKSEPLCYRCGKSGHRINVCKAAEDCSNCRARRLPSEHSARSP
FT                 ECPVYAWRLQLLRSRFVNNG"
FT   CDS           2361..5567
FT                 /product="R1C_NGi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TMAESQTNGTNVCVDVRILQVNCQKSYAAMCDIANYA
FT                 LEDGIEICLFQEPYVYKDRVCGLPAGSRMYLSKSGEAAVVVFGKRYECMLL
FT                 NEGAHEDAVCVWVKGPVGEILAVSLYCRPNGSMQGCVDYLDRVVSTRNGRR
FT                 LLVGMDANAASDLWHSKSMVRAWQAVRRGAVLRDWVVHAEMDVLNVPTLAY
FT                 TFSGARGESDIDVTLYKGSECQFEWMLKDDWGISDHNPIVITMSTGENVDV
FT                 NGERMQKWNARKCNWLLYRGLIETFASDYGYDEYSVLGAEEKLTLLYKWMT
FT                 EANEVCLEKVVTRPAPKRKSVVWWNESLSEKKRMVRERRRAYQRERARTGD
FT                 PDRMKWREWKECEREYRRMMKDAKESDWHGTVERKGETDPWGVISAFCMGK
FT                 LNPVSLAGLRTANGCTKTWMESARVLLDEFFPADDGIPAEEVYGVQMDMNE
FT                 FCMGELDEAVLGMKMRKAPGLDGLTNEMLRQVWKAAPLFLKGLFDTCLSEG
FT                 LFPHKWKEARVVVLLKGADKDVAESRSYRPISLLGSPGKVMERMLVARLMR
FT                 HMEGKWNECQYGFMKGKCTEDAWARAKENVRAAESEYVLGIFVDFKGAFDN
FT                 LLWRVALQKLREAGCTYEELRVWHSYFSDRSVCMYNGMDVVEKCARRGCPQ
FT                 GSISGPPVWNLGMNDLLNELSGLGVEVVAYADDLLLLVQGNRRNELEQSAS
FT                 EALSVVYRYGMNIGVEVSDSKTVCMMLKGSLNMLNRVVHVSTNETDDKKIR
FT                 CVDRVKYLGVNVGVGMDFSVHIGGMRKRVTTVIMRLRRVLRKSWGLKRGVV
FT                 SMMVNGLILPAVMYGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTR
FT                 VCRTVSTEAMQILFGSLPWDIECIRQADLHKVRKGLPMNENDLVADEDLNE
FT                 LSLHECRELVDQRALAAWQDRWEATSNGRVTYEWIRDVGFSGRSMKYFEPS
FT                 LRVCYILTGHGSLNSFLFSRNLSNSPACACGAEREEWIHVLCECDMYAAFR
FT                 DLDSIGVRRTEEGWDVSGVLCDRAKYECLCAFVERAFSMRESIVQRMRERE
FT                 EENGENEELRLG"
XX
SQ   Sequence 6405 BP; 1471 A; 1227 C; 2256 G; 1451 T; 0 other;
     ccccctcacg atcactggct tgtcgcgccg agggggcccg agttcaggag tttgcgaaag        60
     cgaattcctg ttccgctaaa gtgatccaaa cccaggaagt ggtggatgat gtggtgcttc       120
     ggctagccga ccccactctc aggagccggt ccgcgaaagc ggaacggaga ccctgagaag       180
     tgtgggaacg cgaactggag cgcctgatcg gaagccaccg ggcgtgacga ccccggggtt       240
     cctagtccca agcgatgagc gccgtcgctt ggcccgtaaa ccttgcaccg tcttcaacaa       300
     ccttcgcagg gcgtggcgtt ggtacgttgg cggtgtgggg agcgggggct tggcttaacc       360
     gcccggccgc gaggtggggt cctctataaa accccccaat cctacgctta ggtgggcggc       420
     tacgggatgc atggctcctg gagaggagtc ccgagctcac caaccccggc tggctgtggc       480
     ggcttgttcg ggttgcgttg ccttctcgag gtaagggcgc actgcttcga gtgaccgtcg       540
     ttcgtcccaa gtagagaagt cccttcctta tggcgggccc ggtgagctat gcgctgggcg       600
     ccgtcgtaga gacggtgtcc ggtgcgggtg ccccgggtct gcttggggga gggggcgtac       660
     gaaccagatg gatacaataa aaacacagct tcggaaaatg acgcgtagta gtaagggggt       720
     aggatgtagt agggaggact tcctgaagaa ggactccaag ggcgggggtg gagatagtga       780
     ggacacgcgc tcctccgtat actctgctga cagcctgcgc gagcgttcac gctcccggag       840
     tccaacgggc ctgaaatcca ctaaggattt cgagctcgtt gagtcaaagg cggctagaaa       900
     gcagcgcaag gctgaggaga agaggaggag gcgtgagaat gcaaatgcga gtgtgaatga       960
     tagaatgaat aagagtgtga gttgcagtgt gcaggatgta agcaagaaag tgaatgtgag      1020
     tagaagtgaa aatgacgtga gcaagactgg agcgacggag agtatggaag ttggtatgga      1080
     agagtgtgcc agtatgaaag agagtgcgaa tgttaagagg acggtaaaga ggaatgcggt      1140
     gggtcaggat aggtttaagg gggcaaaggg cgagctcttt gtggtgtgtg agaacttgcg      1200
     gcagccactt aagcgcatca agcgcgaggt ggctgacgcc gaggtgcctg tggatagtac      1260
     gagtgtgagt gtgaatgaga gcgctgaggt ttcggaggta gtggttgacg agctgcgtgc      1320
     tgtcactgac ggacttcgtg ggcatctgct gtcagatgcc aacaagttca cgaagtggca      1380
     ggccaacagt gtgctcgacc atgcctcgaa attcgaaggg ctggtgcagc gtctgatgtt      1440
     ggagaatgcg aggttgcgcg gggagctttc tgcccatacg ggtataaagg ctgacctggt      1500
     gaatgtgcgt gagactgtcc gaagagtgga tgagagtatg aatgtcgtaa agacgagggt      1560
     agcagcggcg tcacgagcac ctccggcagc ggccggagct gctcctggta agggttctgg      1620
     tgcgaatgtg gggcctaagc ccagcttcgc gctcgttgta cgtggcgcaa acgagcagct      1680
     cacgtgcgac gaggtgcgga gaagaatgat cgagagcacg agtgaagacg tgaacgtgag      1740
     ggtgaggacc atcagacctg ctcgtggtgg tggggtcgta gtggagacgg ctagcgacgg      1800
     tgagagaaag gctctctccc gttgtgccgg actcgccgag gcgggactcc gtgcggcgga      1860
     gcccaaagtg atggaccctc gggtgattgt atacgatgtc ccgaatgaga tgacgaacga      1920
     gcatctcctt aggggcatgt atgataaaag tttgagtgag catgttagtg tgaatgagtt      1980
     tacaaagcgt gtgaaaattg tcaggagagt ggatgggcag cgactcggca atgtgattgt      2040
     cgagttaccc ctgccatggc gtgacaggtt gttgcaagat ggtagagtgt ttgttggatg      2100
     gaacagcttt aaatgctgtt cgtatgaaag agtgatgcgc tgtttccgtt gccagggcta      2160
     cgaccaccga gccaaggagt gtaagagtga gcctctgtgc tatagatgtg gtaagagtgg      2220
     acataggata aatgtgtgta aggctgcgga ggactgcagc aattgcagag cgagaaggct      2280
     tccttcggag cattcggcga ggtcgccgga gtgcccggtg tacgcttgga gactgcagtt      2340
     gttgcgttct cgttttgtga acaatggctg agtctcaaac gaatggaaca aatgtgtgtg      2400
     tggatgtgcg gatcttgcag gtaaactgtc agaagtcata tgctgcgatg tgcgatattg      2460
     cgaactacgc gctcgaggac ggcatagaga tatgcctatt ccaagagccg tatgtttata      2520
     aagatagggt ttgcggttta ccagcgggtt ccagaatgta tctcagtaag tctggagaag      2580
     cggctgtagt agtgtttggg aaacggtatg aatgtatgtt gttaaatgag ggagcgcatg      2640
     aggatgctgt atgtgtctgg gtgaaagggc cggtggggga gatacttgct gtctctctct      2700
     actgtagacc gaatggtagt atgcaaggat gtgttgacta ccttgatagg gtagtgagca      2760
     ctaggaatgg acgtcggttg cttgtaggaa tggatgcgaa tgctgcgtcc gacctttggc      2820
     acagtaagtc catggtacgg gcgtggcaag cggtgcgtcg gggtgctgtg ttgcgtgatt      2880
     gggtagtgca tgcggaaatg gatgtcttaa atgtccctac cctggcttac accttcagtg      2940
     gagccagggg ggagagtgac attgatgtca ctctctacaa gggtagtgag tgtcagtttg      3000
     aatggatgct gaaggatgac tggggcatta gtgatcacaa tcctattgtg atcacgatgt      3060
     ctacgggaga aaatgtagat gtaaatggcg agaggatgca aaagtggaat gcaaggaagt      3120
     gcaattggct gctgtaccgg ggccttatcg agacctttgc cagcgactat gggtacgacg      3180
     agtactctgt gttaggggca gaggaaaagt taacgctcct gtacaagtgg atgactgagg      3240
     cgaatgaggt gtgcttggag aaggtcgtta cacgacctgc tcctaagcgc aagagtgttg      3300
     tgtggtggaa tgaaagttta agtgagaaga agcgaatggt gcgtgaacgg cgaagagcgt      3360
     atcagcgtga aagagcaaga acgggtgatc cggatcgtat gaaatggcga gaatggaagg      3420
     agtgtgaaag agagtatagg cgaatgatga aggatgcaaa ggagagtgat tggcatggca      3480
     cggtggagcg gaagggggaa actgacccat ggggtgtcat ctcggcattt tgcatgggga      3540
     agttaaaccc tgtaagcctg gctgggctgc ggacggcaaa tgggtgcacg aaaacatgga      3600
     tggagagtgc aagagttctt ctggacgaat tcttccccgc agacgatgga attcctgcgg      3660
     aggaggtcta tggagtccag atggacatga atgagttctg tatgggtgag ttagacgagg      3720
     cagtcttggg tatgaaaatg cgcaaggctc ctggattgga tgggttgacg aatgagatgt      3780
     tgcgccaggt gtggaaagca gcccctttat ttcttaaggg gctgtttgac acgtgtctga      3840
     gtgagggact ctttccacac aagtggaagg aggccagagt ggtcgttctc ctgaaaggag      3900
     ccgacaagga tgtggccgag tctaggtcct acaggcctat cagcctgttg ggtagcccgg      3960
     gcaaggtcat ggagcgaatg ttggttgcgc gcttgatgag gcacatggag ggcaaatgga      4020
     atgagtgtca gtatggtttt atgaaaggga aatgtacgga ggatgcctgg gcgagagcga      4080
     aagagaatgt aagggcggct gagagtgagt atgtccttgg aatctttgtg gatttcaagg      4140
     gtgcgtttga caacttactg tggagagtag ctctacagaa gttgagagag gctggatgta      4200
     cgtatgagga actgcgtgtg tggcactcct attttagtga taggagtgtc tgtatgtata      4260
     atgggatgga tgtggttgag aaatgtgcgc gaagaggttg cccgcaggga tccatatcag      4320
     gacctcctgt gtggaacctc ggaatgaatg acttgttgaa tgagttgtcc ggactggggg      4380
     tggaggtcgt cgcgtatgct gatgacctcc tgctgctagt tcagggcaac aggaggaatg      4440
     aactggagca gtcggcgtct gaggcactga gtgtggttta caggtacggt atgaatattg      4500
     gtgtggaagt gtctgactct aagacagtgt gcatgatgtt gaaaggtagt ctgaatatgc      4560
     tgaatcgtgt ggtgcatgtg tcaacgaatg agacggatga caagaagata aggtgtgtag      4620
     accgtgtgaa gtacctgggt gtgaatgtgg gtgtcggtat ggatttttcg gtccatatcg      4680
     gcggaatgag aaagagggtc actacggtga ttatgcgcct caggagagtc ctcagaaaga      4740
     gctggggact caagcggggc gtagtgagta tgatggtgaa tggcctcatt ctgccggcgg      4800
     ttatgtatgg agcgagtgtt tggtacgaac agctgcataa aaggaagttg cgtggatctc      4860
     ggagactgag tgaggaactt gtcagctgcc agagagtggt gttgtatgcg tgcacgcgtg      4920
     tgtgtagaac tgtctcaacg gaggcgatgc aaattttatt tgggtcgctt ccgtgggaca      4980
     ttgagtgtat caggcaggcg gatttgcaca aggtgcgaaa aggcctgccc atgaatgaga      5040
     atgacctggt ggctgacgag gacctgaatg aattgtcctt gcatgaatgc cgtgagttgg      5100
     tggaccaacg tgctcttgca gcttggcagg accgttggga agccacgagt aacgggcgtg      5160
     tgacgtatga atggatacgg gatgtgggat tctccggccg ctcgatgaaa tatttcgagc      5220
     cgagcctgag ggtctgctac attctgacgg gccacgggag cttgaactcg tttctcttct      5280
     cgagaaacct gagcaactcc ccggcctgcg cgtgtggagc tgagagagag gagtggatac      5340
     atgtgctgtg tgaatgtgat atgtatgcgg ccttcaggga tcttgactcc attggggtca      5400
     ggagaactga ggaaggatgg gacgtgagcg gagtgctttg tgaccgtgcg aagtatgagt      5460
     gtctgtgtgc ctttgtcgag cgcgcattca gtatgcgtga gtcgattgtg cagagaatga      5520
     gagagagaga ggaagagaac ggtgagaatg aggaacttag attagggtaa tgggtgaggg      5580
     ggtgtggggg tgaggggggt agtgggtaga tataaggggt agagggaagg ggggtagggt      5640
     aagggaacaa gtgggttggg ggtagggtaa ctgcgtgtgt gtgtgtgttc ggagtgtgtg      5700
     tgttaaaagg agtgtgggaa tgaatgtgtg tgtgtcggct ggccagctac cgctggccgg      5760
     ctccccgcag ggggattcca ctcttgctct tctaatcgag gctggcctgt gccggactcg      5820
     ttggaggacc aagagaggca tctctgggtt ttgcgaaccc acggacccga gcagcccttc      5880
     cagaggcggg atggtaagat cccaactgga accctcacca gggttaaaac ggtaccatgg      5940
     gcgaccgggg tgcccgctgg gggagaattg cctccctcgc ccggtcactt gggtttggat      6000
     tcgtggtggc agtggttgaa agcccacatc gcttggggtt aggggttggc actgggtgaa      6060
     agactccttg ggtgctccgc accatcggag actggaaccc tttgccgacc tcgacgtgtg      6120
     agttgcggtc tcaactcggg gagcggcctg cttaaaccgt tagggattgg atgggtcccg      6180
     gccccaaccg agggtctcca aaggtcttac caacctgcgg aggaatcggt agtcgcggtt      6240
     tagtagaggg cccaattggc tggcaatgtt tcggcattgc cgtctaattg gtctcaaagc      6300
     tattccgcga tgcgttggcc gagcgtatct cggcccctcg ccccgtgggg ggccgtgtgg      6360
     gtaggccgaa aggcaggtac tgcacgttaa aacaaagaga cgatc                      6405
//
ID   R1C_NLo     repbase;    DNA;    INV; 6413 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   longicornis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1C_NLo.
XX
OS   Nasonia longicornis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6413
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           515..2368
FT                 /product="R1C_NLo_1p"
FT                 /translation="GRTASSDRRSSQVEKSLPYGRPGELCAGHRRRDGVRC
FT                 GCPGSAWGRGRKKQMDTIKTQLRKMTRSSKGVGCSREDFLKKDSKGGGGDS
FT                 EDTRSSVYSADSLRERSRSRSPTGLKSTKDFELVESKAARKQRKAEEKRRR
FT                 RENANASVNDRMIKSVNCSVEDVSKKVNVSRSENDVSKVGATECMEVGMEE
FT                 CVSMKESANVKRTVKRNAVGQDRFKGAKGELFVVCENLRQPLKRIKREVAD
FT                 AEVPVVSTSECVNESAEISEVAVDELRAVTDGLRGHLLSDANKFTKWQASS
FT                 VLDHASKFEGLVQRLMLENARLRGELTAHKSMKAELAKVSETVRRVDEGMN
FT                 VVKTRVAAASRAPPAVAGAAPGRGLGANAGPKPSFALVVRGANEQLTCDEV
FT                 RRRMIESTSEDVNVRVRTIRPARGGGVVVETASDGERKALSRCAGLAEAGL
FT                 RAAEPKVMDPRVIVYGVPNEMTNEHLLRGLYEKSLREHVSVNEFTKRVKIV
FT                 RRVDGQRLGNVIVELPLPWRDRLLQDGRVFVGWNSFKCCPYERIMCCFRCQ
FT                 GYDHRAKECKSEPLCYKCGKSGHRMDACKAAEDCSNCRARKLPSEHLARSL
FT                 QCPMYAWRLQLLRSRFVNNG"
FT   CDS           2361..5558
FT                 /product="R1C_NLo_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TMAESQTNGSDVCVNVRILQVNCQKSYAAMCDIANYA
FT                 LEDGIEICLFQEPYVYKDRVCGLPAGSRMYLSKSGEAAVVVFGKRYECMLL
FT                 NEGAHEDAVCVWVKGPVGEILVVSLYCRPNGSMQGCVDYLDRVVSTRNGRR
FT                 LLVGMDANAASDLWHSKSMVRAWQAVRRGAVLRDWVVHAEMDVLNVPTLAY
FT                 TFSGARGESDIDVTLYKGSECQFEWMLKDDWGISDHNPIVITMSTGENVDV
FT                 NGERMHKWNARKCNWLLYRGLIETFASDYGYDEYSVLGAEEKLTLLYKWMT
FT                 EANEVCMEKVVSRPAPKRKSVVWWNECLSEKKRMVRERRRAYQRERARTGD
FT                 PDRMKWREWKECEREYRRMMKDAKESDWHGTVERKGETDPWGVISAFCMGK
FT                 LNPVSLAGLRTANGCTKTWMESARVLLDEFFPADDGIPAEEVYGVQMDMNE
FT                 FCMGELDEAVLGMKMRKAPGLDGLTNEMLRQVWKAAPLFLKGLFDTCLSEG
FT                 LFPHKWKEARVVVLLKGADKDVAESRSYRPISLLGSPGKVMERMLVARLMR
FT                 HMEGKWNECQYGFMKGKCTEDAWARAKENVRAAESEYVLGIFVDFKGAFDN
FT                 LLWRVALQKLREAGCTYEELRVWHSYFSDRSVCMYNGMDVVEKCARRGCPQ
FT                 GSISGPPVWNLGMNDLLNELSGLGVEVVAYADDLLLLVQGNRRNELEQSAS
FT                 EALSVVYRYGMNIGVEVSDSKTVCMMLKGSLNMLNRVVHVSANGTDDKKIR
FT                 CVDRVKYLGVNVGVGMDFSVHIDGMRKRVTTVIMRLRRVLRKSWGLKRGVV
FT                 SMMVNGLILPAVMYGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTR
FT                 VCRTVSTEAMQILFGSLPWDIECIRRADLHKLRKVLPMNENDLVADEDLNE
FT                 LSLHECRELVDQRALAAWQDRWEATSNGRVTYEWIRDVGFSGRSMKYFEPS
FT                 LRVCYILTGHGSLNSFLFSRNLSNSPACACGAEREDWIHVLCECDMYAAFR
FT                 DLDSIGVRRTEEGWDVSGVLCDRAKYECLCAFVERAFSMRESIVQRMRERE
FT                 RERKRTVRM"
XX
SQ   Sequence 6413 BP; 1477 A; 1234 C; 2249 G; 1453 T; 0 other;
     ccccctcacg atcactggct tgtcgcgccg agggggcccg agttcaggag tttgcgaaag        60
     cgaattcctg ttccgctaaa gtgatccaaa cccaggaagt ggtggatgat gtggtgcttc       120
     ggctagccga ccccactctc aggaaccggt ccgcgaaagc ggaacggaga ccctgagaag       180
     tgtgggaacg cgaactggag cgcctgatcg gaagccaccg ggcgtgacga ccccggggtt       240
     cctagtccca agcgatgagc gccgtcgctt ggcccgtaaa ccttgcaccg tcttcaacaa       300
     ccttcgcagg gcgtggcgtt ggtacgttgg cggtgtgggg agcgggggct tggcttaacc       360
     gcccggccgc gaggtggggt cctctataaa accccccaat cctacgctta ggtgggcggc       420
     tacgggatgc atggctcctg gagaggagtc ccgagctcac caaccccggc tggctgtggc       480
     ggcttgttcg ggttgcgttg ccttctcgag gtaagggcgc actgcttcga gtgaccgtcg       540
     ttcgtcccaa gtagagaagt cccttcctta tggcaggccc ggtgagctat gcgctgggca       600
     ccgtcgtaga gacggtgtcc ggtgcgggtg ccctgggtct gcttggggga ggggacgtaa       660
     gaaacagatg gatacaatta aaacacagct tcggaaaatg acgcgtagta gtaagggggt       720
     aggttgtagt agggaggact tccttaagaa ggactctaag ggcgggggtg gagatagtga       780
     ggacacgcgc tcctccgtat actctgccga cagcctgcgc gagcgttcac gctcccggag       840
     tccaacgggc ctgaaatcca ctaaggattt cgagctcgtt gagtcaaagg cggctagaaa       900
     gcagcgcaag gctgaggaga agaggaggag gcgtgagaat gcaaatgcga gtgtgaatga       960
     tagaatgatt aagagtgtga attgcagcgt ggaggatgta agcaagaaag tgaatgtgag      1020
     tagaagtgaa aatgacgtga gcaaggttgg agcgacggag tgtatggaag tcggtatgga      1080
     agagtgtgtg agtatgaaag agagtgcgaa tgtaaagagg acggtgaaga ggaatgcggt      1140
     gggccaggat aggttcaagg gggcaaaggg cgagctcttt gtggtgtgcg agaatttgcg      1200
     gcagccgctt aagcgcatca agcgcgaggt ggctgacgca gaggtgcctg tggtcagtac      1260
     gagtgagtgt gtgaatgaga gcgctgagat ttcggaggta gcggtcgacg agctgcgtgc      1320
     cgtcactgac ggacttcgtg ggcatctgct ttcagatgcc aacaagttca cgaagtggca      1380
     ggccagcagt gtgctcgacc atgcctcgaa attcgaaggg ctggtgcaac gtctgatgtt      1440
     ggagaatgcg aggttgcgtg gtgagcttac tgctcacaaa agtatgaagg ctgagttggc      1500
     gaaagtgagt gagactgttc gacgagtgga tgagggtatg aatgttgtaa agacgagggt      1560
     agcagcggcg tcacgagcac ctccggcagt ggctggagct gctcctggta ggggtttggg      1620
     tgcgaatgcg gggcctaagc ccagcttcgc gctcgttgta cgtggcgcaa atgagcagct      1680
     cacgtgcgac gaggtgcgaa gaaggatgat tgagagcacg agtgaagacg tgaatgtgag      1740
     ggtgagaacc atcagacctg cgcgtggtgg tggggtcgta gtggagacgg ctagcgatgg      1800
     tgagagaaag gctctctccc gttgtgccgg actcgccgag gcgggactcc gtgcggcgga      1860
     gcccaaagtg atggatcctc gagtgattgt gtacggtgtc ccgaatgaga tgacgaatga      1920
     gcatctcctt aggggcctgt acgagaaaag tttgcgtgag catgtcagtg tgaatgagtt      1980
     cacgaagcgt gtgaagatcg tcaggagagt ggatgggcag cgactcggca atgtgattgt      2040
     cgagttaccc ctgccatggc gtgataggct gttgcaagat ggtagagtgt ttgttggatg      2100
     gaacagcttt aaatgctgtc cgtatgaaag aataatgtgc tgtttccgct gccagggcta      2160
     cgaccatcgt gccaaggaat gtaagagtga gcctctgtgc tacaaatgtg gcaagagtgg      2220
     tcacaggatg gatgcctgta aggctgcaga ggactgcagc aattgcaggg caaggaagct      2280
     tccctcggag catttggcga gatcgctgca atgcccgatg tacgcttgga gactgcagtt      2340
     gttgcgttct cgtttcgtga acaatggctg agtcccaaac aaatggatca gatgtgtgtg      2400
     tgaatgtgag gatcttgcag gtaaactgcc aaaagtctta cgctgcgatg tgcgatattg      2460
     caaactacgc gcttgaggac ggcatagaga tatgcctatt ccaagagccg tatgtttata      2520
     aagatagggt ttgtggttta ccagcgggat ccagaatgta tctcagtaag tctggagaag      2580
     cggctgtagt agtgtttggg aaacggtatg aatgcatgtt gttaaatgag ggagcacatg      2640
     aggatgccgt atgtgtctgg gtgaaagggc cggtggggga gatacttgtt gtctctctct      2700
     actgtagacc gaatggtagt atgcaaggat gtgttgacta ccttgatagg gtagttagca      2760
     ctaggaatgg acgtcggttg cttgtaggaa tggatgcgaa tgctgcgtcc gacctttggc      2820
     acagtaagtc catggtgcgg gcgtggcaag cggtgcgtcg gggtgctgtg ttgcgtgatt      2880
     gggtagtgca tgcggaaatg gatgtcttaa atgtccctac cctggcttac accttcagtg      2940
     gagccagggg ggagagtgac attgatgtca ctctctacaa gggtagtgag tgtcagtttg      3000
     aatggatgct gaaggatgac tggggcatta gtgatcacaa tcctattgtg atcacgatgt      3060
     ctacgggaga aaatgtagat gtaaatggcg agaggatgca taagtggaat gcaaggaagt      3120
     gcaattggct gctgtaccgg ggccttatcg agacctttgc cagcgactat gggtacgacg      3180
     agtactctgt gttaggggca gaggaaaagt taacgctcct gtacaagtgg atgactgagg      3240
     cgaatgaggt gtgcatggag aaggtcgttt cacgacctgc tcctaagcgc aagagtgtgg      3300
     tgtggtggaa tgaatgttta agtgagaaga agcgaatggt gcgtgaacgg cgaagagcgt      3360
     atcagcgtga aagagcaaga acgggtgatc cggatcgtat gaaatggcga gaatggaagg      3420
     agtgtgaaag agagtatagg cgaatgatga aggatgcaaa ggagagtgat tggcatggca      3480
     cggtggagcg gaagggggaa actgacccat ggggtgtcat ctcggcattt tgcatgggga      3540
     agttaaaccc tgtaagcctg gctgggctgc ggacggcaaa tgggtgcacg aaaacatgga      3600
     tggagagtgc aagagttctt ctggacgaat tcttccccgc agacgatgga attcctgcgg      3660
     aggaggtcta tggagtccag atggacatga atgagttttg tatgggtgag ttagacgagg      3720
     cagtcttggg catgaaaatg cgcaaggctc ctggattgga tgggttgacg aatgagatgt      3780
     tgcgccaggt gtggaaagca gcccctttat ttcttaaggg gctgtttgac acgtgtctga      3840
     gtgagggact ctttccacac aagtggaagg aggccagagt ggtcgttctc ctgaaaggag      3900
     ccgacaagga tgtggccgag tctaggtcct acaggcctat cagcctgttg ggtagcccgg      3960
     gcaaggtcat ggagcgaatg ttggttgcgc gcttgatgag gcacatggag ggcaaatgga      4020
     atgagtgtca gtatggtttt atgaaaggga aatgtacgga ggatgcctgg gcgagagcga      4080
     aagagaatgt aagggcggct gagagtgagt atgtccttgg aatctttgtg gatttcaagg      4140
     gtgcgtttga caacttactg tggagagtag ctctacagaa gttgagagag gctggatgta      4200
     cgtatgagga actgcgtgtg tggcactcct attttagtga taggagtgtc tgtatgtata      4260
     atgggatgga tgtggttgag aaatgtgcgc gaagaggttg cccgcaggga tccatatcag      4320
     gacctcctgt gtggaacctc ggaatgaatg acttgttgaa tgagttgtcc ggactggggg      4380
     tggaggtcgt cgcgtatgct gatgacctcc tgctgctagt tcagggcaac aggaggaatg      4440
     aactggagca gtcggcgtct gaggcactga gtgtggttta caggtacggt atgaatattg      4500
     gtgtggaagt gtctgattct aagacagtgt gcatgatgct gaaaggtagt ctgaatatgc      4560
     tgaatcgtgt ggtgcatgtg tcagcgaatg ggacggatga caagaagatt aggtgtgtag      4620
     accgtgtgaa gtacctgggt gtgaatgtgg gcgtcggtat ggacttttcg gtccatatcg      4680
     atggaatgag aaagagggtc actacggtga ttatgcgcct caggagagtc ctcagaaaga      4740
     gctggggact caagcggggc gtagtgagta tgatggtgaa tggcctcatt ctgccggcgg      4800
     ttatgtatgg agcgagtgtt tggtacgaac agctgcataa aaggaagttg cgtggatctc      4860
     ggagactgag tgaggaactc gtcagctgcc agagagtggt gttgtatgcg tgcacgcgtg      4920
     tgtgtagaac tgtctcaacg gaggcgatgc agattttatt tgggtcgctt ccgtgggaca      4980
     tcgagtgtat caggcgggcg gatttgcaca agttgcgaaa agtcctgccc atgaatgaga      5040
     atgacctggt ggctgacgag gacctgaatg aattgtcctt gcatgaatgc cgtgagttgg      5100
     tggaccaacg tgctcttgca gcttggcagg accgttggga agccacgagt aacgggcgtg      5160
     tgacgtatga atggatacgg gatgtgggat tctccggccg ctcgatgaaa tatttcgagc      5220
     cgagcctgag ggtctgctac attctgacgg gccacgggag cttgaactcg tttctcttct      5280
     cgagaaacct gagcaactcc ccggcctgcg cgtgtggagc tgagagagag gattggatac      5340
     atgtgctgtg tgaatgtgat atgtatgcgg ccttcaggga tcttgactcc attggggtca      5400
     ggagaactga ggaaggatgg gacgtgagcg gagtgctttg cgaccgtgcg aagtatgagt      5460
     gtctgtgtgc ctttgtcgag cgcgcattca gtatgcgtga gtcgattgtg cagagaatga      5520
     gagagagaga gagagagagg aagagaacgg tgagaatgta gatcttagat tagggtaatg      5580
     gatgaggggg tgcgggggtg agggggctag tgggtagata taaggggtag tgggaagggg      5640
     ggtagggtaa gggaacaggt gggttggggg gtagggtaac tgcgtgtgtg tgtgttcgga      5700
     gtgagtgtgt taaacggagt gtggaaatga atatgtgtgt gtcggctggc cagctaccgc      5760
     tggccggctc cacgcagggg gattccactg ttgctcttct aatcgaggct ggcctgtgcc      5820
     ggactcgttg gaggaccaag agaggcatct ctgggttttg cgaacccacg gacccgagca      5880
     gcccttccag aggcgggatg gtaagatccc aactggaacc ctcaccaggg ttaaaacggt      5940
     accatgggcg accggggtgc ccgctggggg agaattgcct ccctcgcccg gtcacttggg      6000
     tttggattcg tggtggcagt ggttgaaagc ccacatcgct tggggttagg ggttggcact      6060
     gggtgaaaga ctccttgggt gctccgcacc atcggagact ggaacccttt gccgacctcg      6120
     acgtgtgagt tgcggtctca actcggggag cggcctgctt aaaccgttag ggattggatg      6180
     ggtcccggcc ccaaccgagg gtctccaaag gtcttaccaa cctgcggagg aatcggtagt      6240
     cgcggtttag tagagggccc aattggctgg caatgtctcg gcattgccgt ctaattggtc      6300
     tcaaagctac tccgcgatgc gttggccgag cgtatctcgg cccctcgccc cgtggggggc      6360
     cgtgtgggta ggccgaaagg caggtactgc acgttaaaac aaagagacga tct             6413
//
ID   R1C_NVi     repbase;    DNA;    INV; 6404 BP.
XX
AC   .
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   08-NOV-2010 (Rel. 2.02, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   vitripennis.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Retrotransposable element R1; NVR1; R1_NV;
KW   R1C_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6404
RA   Burke D.W., Eickbush G.D., Xiong Y., Jakubczak L.J.
RA   and Eickbush H.T.;
RT   "Sequence relationship of retrotransposable elements R1 and R2
RT   within and between divergent insect species.";
RL   Mol. Biol. Evol 10, 163-185 (1993).
XX
RN   [2]
RP   1-6404
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. A partial sequence of this family was previously
CC   registered as R1_NV.
XX
FH   Key           Location/Qualifiers
FT   CDS           412..2391
FT                 /product="R1C_NVi_1p"
FT                 /translation="VGGYGMHGSWRGVASPPTPGWLWRLVRVALPSRGKGA
FT                 LLRVTVVSSRIEKSLPYGGHGELCAGYHRRDGARCGCPGSAWGRGRTKQMD
FT                 SIKTKLRKMTRSKGAGGSREDFLRKDSKGGGGDSEDTRSSVYSADSLRERS
FT                 RSRSPSGLKPTKDFELVETKAARKQRKAEEKRKRRENVSASENDNRNDRVD
FT                 KSVNCSVDGNQGVSKKVSVSRSENDVSRIIETESMDVGMEVCASMNECANG
FT                 KRTVKRNAVGQDRFKGARGELFVVCENLRQPPKRIKREVVDAEVPVDGKSV
FT                 GVNESAEVSEVMVGELRAVTDGLRGHLLSDANKFTKWQASSVLDHASKYEG
FT                 LVQRLMLENAKLRGELTAHKCMKAELANVCETVRRVDEGMNVVKMRVAASS
FT                 RSPPAAAEVVPGSRGLGANVGPKPSFALVVRGAKEQLTCDEVRRRMIESTS
FT                 EDVNVRVRTIRPARGGGVVVETASDGERKALSRCAGLVEAGLRAVEPKVMD
FT                 PRVIVYSVPNEMTNEHLLRGMYEKSLREHVSVNEFTKRVKIVRREDGQRLG
FT                 NVIVELPLPWRDRLLQDGRVFVGWNSFRCCSYERVMCCFRCQGYDHRAREC
FT                 KSEPLCYKCGKSGHRMNECKAAEDCSNCRARKLPSEHLARSPRCPMYAWKL
FT                 RLLRSRFVNNG"
FT   CDS           2384..5560
FT                 /product="R1C_NVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TMAESQMNGTDVGVNVRILQVNCQKSYAAMCDIANCA
FT                 LEDGIEICLFQEPYVYKDRVCGLPAGSRMYLSKSGEAAVVVFGKRYECMLL
FT                 NEGAHEDAVCVWVKGPVGEILVVSLYCRPNGSMQECVDYLDRVVGTRNGRR
FT                 LLVGMDANAASELWHSKSMVRAWQAVRRGAVLGDWVVQAEMDVLNVPTLAY
FT                 TFSGARGESDIDVTLYKGSECQFEWMLKDDWGISDHNPIVITMSTGENVDV
FT                 NGERMHKWNARKCNWLLYRGLIETFASDYGYDEYSVLGAEEKLTLLYKWMT
FT                 EANEVCMEKVVSRPAPKRKSVVWWNESLSEKKRKVREWRRAYQSERSRTGD
FT                 PDRTRWREWKECEREYRRMMKDAKESNWHGTVERKGETDPWGVISTFCMGK
FT                 LNPESLAGLRTANGCTKTWMESARVLLDEFFPADDGIPAEEVHGVQMDMYE
FT                 FCMGELDEAVLGMKMRKAPGMDGLTNEMLRQVWRAAPLFLKGLFDTCLSEG
FT                 LFPHRWKEARVVVLLKGADKDVAESRSYRPISLLGSPGKVMERMMVARLMR
FT                 HMEGKWNARQYGFMRGKCTEDAWARAKENVREAESEYVLGIFVDFKGAFDN
FT                 LLWRVALQKLREAGCTYEELRVWHSYFSDRSVCMYNGMDVVEKRARRGCPQ
FT                 GSISGPPVWNLGMNDLLNELSELGVEVVAYADDLLLLVQGNRRNELEQSAS
FT                 EALSVVYRYGTNIGVEVSDSKTVCMMLKGSLNMLNRVVHVSTNGMDDKRIR
FT                 CVDRVKYLGVNVGIGMDFSVHIDGMKRRVTTVIMRLRGVLRKSWGLKRGVV
FT                 SMVVKGLFLPAVMYGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTR
FT                 VCRTVSTEAMQILFGSLPWDIECFRRANLHKVRKGLPMNESDLVTDEDLYE
FT                 LSLHECRELVDQRALAAWQDRWEATSNGRVTYEWIRDVGFSGRSMKYFEPS
FT                 LRVCYVLTGHGSMNSFLFSRNLSNSPACACGTEREDWIHVLCECDMYAAFR
FT                 DLDSIGVRRTEVGWDVSGVLLDRAKYECLCAFVERAFRMRELIVQRMRENE
FT                 ES"
XX
SQ   Sequence 6404 BP; 1476 A; 1216 C; 2248 G; 1464 T; 0 other;
     ccccctcacg atcactggct tgtcgcgccg agggggcccg agttcaggag tttgcgaaag        60
     cgaattcctg ttccgctaaa gtgatccaaa cccaggaagt ggtggaggat ccggtgcttt       120
     ggctagccga ccccactctc aggaaccgat ccgcgaaagc ggaaaggaga ccccgagaag       180
     tgtgggaacg cgaaccggag cgccggatcc gaagccaccg ggcttgacaa ccccggggtt       240
     cctagtccca agcgatgagc gccgtcgctt ggcccgtaaa ccttgcaccg tcttcaacaa       300
     ccttcgcagg gcgtggcgtt ggtacgttgg cggtgtgggg agcgggggct tggcttaacc       360
     gcccgtccgc gaggtggggt cctctataaa accccccaat cctacgctta ggtgggcggc       420
     tatgggatgc atggctcttg gagaggagtc gcgagcccac caacccccgg ctggctgtgg       480
     cggcttgttc gggttgcgtt gccttctcga ggtaagggcg cactgcttcg agtgaccgtt       540
     gtctcgtccc gaatagagaa gtcccttcct tatggtggac acggtgagct atgcgctggg       600
     taccatcgta gagatggtgc tcggtgcggg tgccccgggt ctgcttgggg gaggggacgt       660
     acgaaacaga tggattcaat taaaacaaag cttcggaaaa tgacgcgtag taagggggca       720
     ggaggtagta gggaggactt cctgaggaag gattccaagg gcgggggtgg agatagtgag       780
     gacacgcgct cctccgtata ctctgctgac agcctgcgcg agcgttcacg ctcccggagt       840
     ccatcgggcc tgaaacccac aaaggatttc gagctcgttg agacaaaggc ggcgagaaag       900
     cagcgaaagg ccgaggagaa gaggaagagg cgcgaaaatg tgagtgcgag tgagaatgat       960
     aataggaatg atagggttga caagagtgtg aattgtagtg tggatggaaa tcaaggtgta      1020
     agcaagaaag tgagtgtcag taggagtgaa aatgatgtga gcaggattat agagacggag      1080
     agtatggatg ttggtatgga agtgtgtgcg agtatgaatg agtgtgcgaa tggcaagagg      1140
     acggtaaaga ggaatgcggt gggccaggat aggttcaagg gggcgagggg cgagctcttt      1200
     gtggtgtgtg agaatttgcg gcagccgcct aagcgcatca agcgcgaggt ggttgacgcc      1260
     gaggtgcctg tggatggtaa gagtgtgggt gtgaatgaga gcgctgaggt ttcggaggta      1320
     atggtcggcg agctgcgtgc agtcactgac ggacttcgtg ggcatctgct ttcagatgcc      1380
     aacaagttca cgaagtggca ggccagtagt gtgctcgacc atgcctcgaa atacgaaggg      1440
     ctggtgcagc gcttgatgtt agagaatgcg aagttgcgtg gtgagcttac tgctcacaag      1500
     tgtatgaagg ctgagttagc gaatgtgtgt gagactgtcc gaagagtgga tgaagggatg      1560
     aatgtcgtaa agatgagggt agcggcgtcg tcacggtcac ctccagcagc ggctgaggtt      1620
     gttcctggta gtaggggttt gggagcgaat gtggggccta agcccagctt cgcgcttgtt      1680
     gtgcgtggcg caaaggagca gctcacgtgc gacgaggtgc gaagaagaat gattgagagc      1740
     acgagtgagg acgtgaatgt tagggtgagg accatcagac ctgctcgtgg tggtggggtc      1800
     gtggtggaga cggctagcga tggagagaga aaggctctct cccggtgtgc cggactcgtc      1860
     gaggcgggac tccgtgctgt ggagcccaaa gtgatggatc ctcgagtgat tgtgtacagt      1920
     gtcccgaatg agatgacgaa tgagcatctc cttaggggta tgtacgagaa aagtttgcgt      1980
     gagcatgtta gtgtgaatga attcacgaag cgtgtgaaga tcgtcaggag agaggatggg      2040
     cagcgactcg gcaatgtgat tgtcgagtta cctctgccat ggcgtgatag gctgttgcaa      2100
     gatggtagag tgtttgttgg atggaacagc tttagatgct gttcgtatga aagggtgatg      2160
     tgctgtttcc gctgccaggg ctacgaccat cgtgccaggg aatgtaagag tgagcctctg      2220
     tgctacaaat gtggcaagag tgggcacagg atgaatgagt gtaaggctgc ggaggactgc      2280
     agcaattgca gagcaagaaa gcttccttcg gagcatttgg cgagatcgcc gcggtgcccg      2340
     atgtatgctt ggaaactgcg gttgttgcgc tctcgattcg tgaacaatgg ctgagtctca      2400
     aatgaatgga acagatgtgg gtgtaaatgt gcggatcttg caggtaaatt gtcaaaagtc      2460
     ctacgctgcg atgtgcgata ttgcgaactg cgcgcttgag gacggcatag agatatgcct      2520
     attccaagag ccgtatgttt ataaggatag ggtttgtggt ttaccagcgg gatccagaat      2580
     gtatctcagt aagtctggag aagcggctgt agtagtgttt gggaaaaggt atgaatgcat      2640
     gttactaaat gagggagcgc atgaggacgc cgtatgcgtc tgggtgaaag gcccggtggg      2700
     ggagatactt gttgtctctc tctactgtag accgaatggc agtatgcaag aatgtgttga      2760
     ctaccttgac agagtggtcg gcactaggaa tggacgtcgg ttgcttgttg gaatggatgc      2820
     gaatgctgcg tccgagcttt ggcatagtaa gtccatggtt cgggcgtggc aagcggtgcg      2880
     tcggggtgct gtgttgggtg actgggttgt gcaagcggaa atggatgttt taaatgtccc      2940
     taccctggct tacaccttca gtggagccag aggggagagt gacattgatg tcactctcta      3000
     caagggtagt gagtgtcagt ttgaatggat gttgaaggat gactggggca ttagtgatca      3060
     taatcctatt gtgatcacga tgtctacggg agaaaatgtg gatgtaaatg gcgagaggat      3120
     gcataagtgg aatgcaagga agtgcaattg gctgctgtac cggggcctta tcgagacctt      3180
     tgccagcgac tatgggtacg acgagtactc tgtgttaggg gcagaggaaa agttaacgct      3240
     cctgtacaag tggatgactg aggcgaatga ggtttgcatg gagaaggtcg tttcacgacc      3300
     ggctcctaag cgtaagagtg ttgtgtggtg gaatgaaagt ttaagcgaga agaagcgaaa      3360
     ggtgcgtgaa tggcggagag cgtatcagag tgaaagatca agaacgggtg acccggatcg      3420
     tacgagatgg cgagagtgga aggagtgtga aagagaatat aggcgaatga tgaaggatgc      3480
     aaaagagagt aactggcatg gcacggtgga gcggaagggg gaaactgacc catggggtgt      3540
     catctcgaca ttctgcatgg ggaagttaaa ccctgaaagc ttggctgggc tgcggacggc      3600
     gaatggatgt acgaagacgt ggatggagag tgcaagagtg cttctggacg agttcttccc      3660
     cgcagacgat ggaattcctg cggaggaggt gcatggagtc cagatggata tgtatgaatt      3720
     ctgcatgggt gagctagacg aggcagtctt gggcatgaaa atgcgcaagg ctcctggaat      3780
     ggatgggttg acgaatgaga tgttgcgcca ggtgtggaga gcagcccccc tgtttcttaa      3840
     ggggctgttt gacacgtgtc tgagtgaggg actctttcca cacaggtgga aggaggccag      3900
     agtggtcgtt ctcctgaaag gagccgacaa ggatgtggcc gagtctaggt cctacaggcc      3960
     tattagcttg ttgggtagcc cgggcaaggt catggagcga atgatggttg cgcgtttgat      4020
     gaggcacatg gagggtaaat ggaatgcacg tcagtatggc tttatgcgtg ggaagtgtac      4080
     ggaggatgcc tgggcgagag cgaaagagaa tgtaagggag gctgagagtg agtatgttct      4140
     tggaatcttt gttgatttca agggtgcgtt cgacaactta ctgtggagag tagctctaca      4200
     gaagttgaga gaggctggct gtacatatga ggaactgcgt gtgtggcact cctattttag      4260
     cgataggagt gtctgtatgt ataatggtat ggatgtagta gagaaacgtg cccgaagagg      4320
     ttgcccgcag ggatccatat caggacctcc tgtgtggaat ctcggaatga acgacttgtt      4380
     gaatgagttg tccgaactgg gggtggaggt cgtcgcgtat gctgatgatc tcctgctact      4440
     agttcagggc aacaggagga atgaacttga gcagtcggcg tctgaggcac tgagtgtggt      4500
     atacaggtac ggtacgaata ttggtgtgga agtgtctgac tccaagacag tgtgcatgat      4560
     gctgaaaggt agtttgaata tgttgaatcg ggttgtgcat gtgtcaacga atgggatgga      4620
     tgataagagg attaggtgtg tggaccgcgt gaagtacctg ggtgtgaatg tgggcatcgg      4680
     tatggacttt tcggtccata tcgatggaat gaaaaggagg gtcactacgg tgatcatgcg      4740
     cctcagggga gtcctcagaa agagctgggg actcaagcgg ggcgtagtga gtatggtggt      4800
     gaaaggcctc tttctgccgg ctgttatgta tggagcgagt gtttggtacg aacagctgca      4860
     taaaagaaag ttgcgtggtt ctcggagact gagtgaggaa ctcgtcagct gccagagagt      4920
     ggtgttatat gcgtgcacgc gtgtgtgtag aactgtctca acggaggcga tgcaaatctt      4980
     atttgggtcg cttccgtggg acattgagtg ttttaggcgg gcgaatttgc acaaagtgcg      5040
     aaagggcctg cccatgaatg agagtgacct ggtgactgac gaggacctgt atgaattgtc      5100
     gttgcatgaa tgccgtgaac tggtggacca acgtgccctt gcagcttggc aggaccgttg      5160
     ggaagccacg agtaacgggc gtgtgacgta tgaatggata cgggacgtgg gattctccgg      5220
     ccgctcgatg aaatatttcg agccgagcct gagggtctgc tacgttctga cgggccatgg      5280
     gagcatgaac tcgtttctct tctcgagaaa cctgagcaac tccccggcct gcgcgtgtgg      5340
     aacagagaga gaggactgga tacatgtgct gtgtgaatgt gacatgtatg cggccttcag      5400
     ggatcttgac tccatcggag tcaggagaac tgaggtagga tgggatgtga gcggagtgct      5460
     tcttgaccgt gcgaagtatg agtgtctgtg tgcctttgtc gagcgcgcat tcagaatgcg      5520
     tgagttgatt gtacagagaa tgagagagaa tgaggaaagt tagattagga ttagggtaat      5580
     cggtgagggg gtgagggggg tagagggtag gtataagggg taaagggtag ggggtagggt      5640
     aagggaagtt gtgggttggg ggtagggtaa ttgcgtgtgt gagagcgtgt ggagtgtgtg      5700
     ttagatgagt gtgggaatga atgtgtgcgt gttggctggc cagctgctcg ctggtcggct      5760
     ccccgcaggg ggatcccact cttgctcttc taatcgaggc tggcctgtgc cggactcgtt      5820
     ggaggaccaa gagaggcatc tctgggtttt gcgaacccac ggacctgagc agcccttcca      5880
     gaggcgggat ggtaagatcc caactggaac cctcaccagg gttaaaacgg taccatgggc      5940
     gaccggggtg cccgctgggg gagaattgcc tccctcgccc ggtcacttgg gtttggattc      6000
     gtggtggcag tggttgaaag cccacatcgc ttggggttag ggattggcac tgggtgaaag      6060
     actccttggg tgctctgcac catcggagac tggaaccctc tgccagcctc gacgtgtgag      6120
     ttgcggtctc aactcgggga gcggcctgct taaaccgtta gggattggat gggtcccggc      6180
     cccaaccgag ggtctccaaa ggtcttacca acctgcggag gaatcggtag tcgcggctta      6240
     gtagagggcc taattggttg gcaatgtttc ggcattgccg tctaattggt ctcaaagcta      6300
     ttccgcgatg cgttggccga gcgtatctcg gcccctcgcc ccgtgggggg ccgtgtgggt      6360
     gggccgaaag gcaggtactg cacgttaaaa caaagagacg atct                       6404
//
ID   R1D_NGi     repbase;    DNA;    INV; 7301 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia giraulti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1D_NGi.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7301
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           2855..6388
FT                 /product="R1D_NGi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KLKIKMPGPHKKNVAEVQPEERSPTTPGNPLVAESGR
FT                 LLTGAREDLEHPSVRTWPVRSGGGLRRLGEGEVGLRAASVRLVRDERIEKM
FT                 TRITVEVEEPGSKNEIRFLQINAGGGQLVNAEICELIASKKIDIVLAQEPY
FT                 SKVNKGSRYFTGLRRASRAICLKSAGTKTAPKAFVAVPNPDFHAFFVSALS
FT                 TQHCVVAEVHTPSVTFFAVSMYFQFCDDIEVHLGQLEKVLENLRGQKVVIG
FT                 IDANAESSLWSPRGTNEKGEKLERLIAAFSLHVVNDRTQPPTFEERGVSSY
FT                 IDVTLVSGSMIAEVQSWKVKRDWTSSDHNAIIFKITTVAQTDRVDSSRFNT
FT                 RRADWGLLDSTIKELSVSHLDHIILDSAEEVERMADALQKVLYEACETAIP
FT                 RRRRIRKNNPWWTRELTDKKSELYSARRRMQQQWSLPGHNLRKAEYRALLR
FT                 DYCRSVKGAKVGSWQEVVTVRGNEEPWGVVYKQLRGKLHNERTLSSVRCGD
FT                 TESLSMLETANRLLEVHVPDDTPSNETPEQAQIRDSINSPPETEDAAPFEQ
FT                 WEIALILASLKNNKAPGFDLLEVRILKAAIKAIPHHFLRLFNACLEHGVFP
FT                 RAWKQASLIFLPKGGKESNDSKSYRPISLLPVTGKLYERLVKRRLSDTALG
FT                 PDMISDRQFGFRAGMSTEDAIIELRKLTAASPKKQVAALLFDVKGAFDCIW
FT                 RPAILQSLKEKDCPKNVYKLLVSYFEDRQAKVVWGTNHVSKQATRGCPQGS
FT                 VLGPSGWNLGFDPLLRSLEQGVVTEGGGKLPINFVAYADDLAVLVEGDSRA
FT                 EIEKVGKAVVKHIVEKCSAIKLEVSESKTVGIFVKKPKVIGSKAVKINRKD
FT                 RRKGGARNPKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPL
FT                 FSDLRKLAQCQWGLGHRALETIYKGVFVPTVCYASAAWYKEGAHTDRILED
FT                 LHRQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSVAKYHLRKGEDAEI
FT                 GGVVIRHDPEGLKENYNRVLEIANEMWQARWEASEQGNATRELFFPDVVAR
FT                 VKSDWIRPDHFTAQVLTGHGYFNEKLHQLSLAKAAACFCCGEPDNNLHFLL
FT                 ECPAFAEFRDELITPISGGLEAPEATLMLVSSPEGFAALKEYSRVAFECKR
FT                 QLENALTESDDGLSSESEE"
XX
SQ   Sequence 7301 BP; 1887 A; 1841 C; 1916 G; 1657 T; 0 other;
     ccggttggtt gaagtactca aggcaacagt tcttgtttgc agggtatgga tccttctgga        60
     agtgccagtg atacagcgtc tacgtcgcgc tagatatcaa catctctccc acaagttggg       120
     gggccctttc aaaagtgaag atggggccgc gagatggcta atagtattac ggctaagttc       180
     gaacgcgcaa agatggggca gtggaatcac cttatgagaa caggacaaga ttcccctgta       240
     tgtgtcagag ctgcaggctc ggtattgtat agcataaagg attacttggt ggttttagca       300
     aatacgaatt tccgggagcg ctgagggttc tcccggggaa gcgctcccta aaagaagtgt       360
     ggaaggaaaa atttttcctg cagaagcact ctcgatgatc ggtagatcta ttgttatgcc       420
     gtatcgagct tgtatgcctg ggtcaagggc ccgactcagg ttgcgagccc ggaggcccaa       480
     ttgtacacga acccgcccgt tcgaacacct caaccgttga tatacgtgag cctcctttgg       540
     gtaagtgcta cgataatcaa cggttttcga aagcgaatct gcctctggca gcccaaactc       600
     ccgtgcacct cttgaggcgc acgtattccc ttccttcctt ccttccttgc gctcccaaac       660
     gcccgcgtaa ctccagtgag taacgtgtgg tttcttctag gccgggtagg aagttattag       720
     gtgataggtt tagttaggat agaattagct ctggcactct gtgaccactt acccccgtgg       780
     gtaacgccgt aattatctcg cgcggtcgcc tcgtcggctc gtggcggctg ggaactgcaa       840
     gcgcgtaagc gcgagcggaa ctcggctgct gggggtcgac ggcgcgatag taggcctctc       900
     cgatctagtc ttctatcctt ccttcttttc tttttcttcc accccgcgtg gcttgctctc       960
     tgcgccttgg ctcttgtcag ggtgtagggg gcattctcac gttggggact tttcgagatc      1020
     gaaagcaatg cgtgtggaat caaaaagcaa tgcgtgtggg atcaaaaaga aatgcgtggc      1080
     agttgatact tagtcttaga ttcacttgcg tccgtaagac gagccgacca ttagggtcgg      1140
     caagtcacgt taggaacttt tccagactct gaaaagcaat gcgtgtcgac tagcaaaata      1200
     gattttagct tcactagcat ccataagacg agccggccat tagggccggc aagtcacgtt      1260
     aaggactttt ttcaaatttc tcacttgaga aagcaatgcg tatcaactga caactaaatc      1320
     atagccggcc attagggccg gcaagtcacg ttagggactt tttcacatct tccacgcgcc      1380
     ccaagagtag aatcaccccg cgaatataaa ctcaacttcc tctcaacttc ctctctctct      1440
     tttctatact ctcacacaca catatacact cacaacaaac acaaaacacg atgcaggccg      1500
     cgcatctggg ccagtttcgc tgtttcagcg ttagggtgag accaggtaac tttgccggca      1560
     tcgtttacat atacacacac acaaacaatc taaccaacta accacacgat acaggccgcg      1620
     cacttgggcc aatttcgctg tcacagcgtt agggtgagac caagtaactt cgccggtatc      1680
     aatcacgaac acacatacta acacttttcg atgcaggccg cgcacttggg tcagtttcgc      1740
     tgtcacagcg ttaggacgag accaagtaac tttgccggca tcaatcacga acacatacta      1800
     acacttttcg atgcaggccg cgcacttggg ccagtttcgc tgtcacagcg tcagggtgag      1860
     accaagtaac tttgccggca taaatcacga acacatacta acacttttca atgcaggccg      1920
     cgcacttggg ccagtttcgc tgtcacagcg ttagggtgag accaagtaac tttgccggca      1980
     taaaataact ccttttctta acttagacaa cttctcttct cttctcctct aaacttagct      2040
     aaatcaggca cgcgagcgag cgctcgccta ccatctgcgc actctaatat taattcgaaa      2100
     agggattcgc gatcctctag ctcaaggcgg cctgagaaag ccaggctcga cgccagtttc      2160
     cccgtgacag gcacctaaaa ctcttagcaa ctaatgtgtc ttccgtaagt ccgcgtgcgt      2220
     gaccccatag gtaccgctat gttgcactga aaatcatctc gcgtaataag agctcgtcgt      2280
     gctcatgtgc tgcgttgtct ttcctaagtt atctagcttg ggccgatgga gggatagcct      2340
     tctcggcctt acagtgcaac tagccaggct tacatagcaa cctcaggtac tctttaagtc      2400
     gaaaactcta gtcgcgtccg gcctgtcacg ggaagaaata gaaaacacga attaaagcca      2460
     cgcgccgcgt atcgtgcagg gatgggtaaa cagtctgcgc ggaccatgta ggttcacgac      2520
     ttcacagtcg ctaggaggcg gagccgtaag ccccgtgtaa aaccagaggc acctcctggg      2580
     ccgcgtgata gtttgggagc ccgggccgtc agttagccag gcggttaggc tgctccgtaa      2640
     cagcacgtgt aaaagcttcg tcgccggagc acttggttgg ctacctatgg ggacgtgtaa      2700
     cggcacggag tgttgccgcg gctgctgaaa gttccgctct ctctcttttg ttcgcgcttt      2760
     ttggcgcatg gtaaccgtgc aggcgtccac ccagtgggaa acaaactcga cctagattaa      2820
     ggcttctaac aaatatgctt attcctgcag gtaaaaactc aaaatcaaaa tgccaggtcc      2880
     acataagaaa aacgttgctg aggtgcagcc agaggagagg tccccaacca ctccagggaa      2940
     tcccctcgtc gccgagtcgg gccgtcttct gaccggtgcg agggaagacc ttgagcatcc      3000
     ctcagtcagg acctggccgg ttaggagcgg cggcgggcta cgacggcttg gggaaggtga      3060
     agtcggcctc cgagccgcgt ctgttagatt agttcgtgat gagcgcatcg aaaagatgac      3120
     acggataaca gtagaggtcg aggagccggg ctccaaaaac gagattaggt tcttgcaaat      3180
     aaacgcggga ggggggcagt tagtaaacgc cgaaatttgc gaattaatag cgtcaaaaaa      3240
     gatagacata gttctggctc aggagccata ctcgaaagtt aacaaagggt cgcgttactt      3300
     cacaggtctt agacgtgcaa gtcgggcaat atgtctaaag agcgcaggca caaagacggc      3360
     tcctaaagcc ttcgtagccg tgccaaaccc cgacttccac gccttcttcg tctcagcgtt      3420
     aagcacccaa cactgcgtgg ttgccgaggt gcatacgcct agcgtcacgt ttttcgctgt      3480
     ctcaatgtac tttcaattct gcgacgatat tgaagtacac ctcgggcaac tagaaaaagt      3540
     attagagaac ctcagaggtc aaaaggtagt aataggcatt gacgcaaacg cggaatcctc      3600
     gctttggtcc cctcgtggga caaacgagaa aggagagaag ctcgagcgac taatcgcggc      3660
     tttcagcctc cacgtagtaa acgacagaac ccaacctccg accttcgaag agaggggagt      3720
     ttcgtcctac atcgacgtaa ctctcgtctc ggggtccatg atcgcggagg tacagtcctg      3780
     gaaagtgaaa cgggattgga cctccagcga ccataacgcg ataatcttta aaatcactac      3840
     cgtagcccaa acggatcgag tggactccag tcgattcaat accagacgag ctgactgggg      3900
     cctgctcgac tctacgatca aggagttgtc cgtttcccac cttgaccaca ttatcttgga      3960
     tagtgcagag gaggtcgagc gaatggccga tgctctccag aaagtcctgt acgaagcgtg      4020
     cgaaaccgcc ataccgcgta ggcgccgtat ccggaaaaat aacccctggt ggactcgaga      4080
     acttaccgac aaaaagtccg agctctacag cgctaggcgt agaatgcagc aacagtggag      4140
     cctccctgga cacaatttgc gaaaagcaga atatcgggct ctattgcgcg attactgccg      4200
     atcggtgaaa ggggccaagg tcggcagctg gcaagaagtc gtcacagtgc gcggaaatga      4260
     ggagccatgg ggggtagtct acaagcagct cagaggcaag ctgcataacg aaagaaccct      4320
     cagttccgtt cggtgtgggg atacggagtc attgtcgatg ttggagacgg ccaaccgtct      4380
     gcttgaggtg cacgtcccag acgatacacc ttccaacgaa acccccgagc aggcacagat      4440
     tagagattcg ataaactcac cgcccgagac cgaagatgcc gcacctttcg agcaatggga      4500
     gatagctctc attctcgcat ccctcaaaaa caacaaagct cccggcttcg accttcttga      4560
     agtcagaatc ttaaaggctg ccatcaaagc cattcctcat cacttcctgc ggctcttcaa      4620
     cgcctgccta gagcacggcg tcttccctcg agcctggaaa caggcttccc tcattttcct      4680
     cccaaaagga ggcaaagaaa gtaacgactc gaaatcgtac cgacccatca gtctcctccc      4740
     ggttacagga aaactttacg agcggttagt aaaaaggaga ctatccgata cagcgctagg      4800
     accagacatg atctccgaca ggcagttcgg cttcagggct ggcatgtcta ctgaagacgc      4860
     gatcatcgag ctgcgcaaac ttacagccgc ttctcctaag aagcaggttg ctgcgcttct      4920
     tttcgatgtt aaaggcgcct ttgactgcat ttggcgcccg gccatcctcc aaagcctcaa      4980
     agagaaagat tgtcccaaaa acgtatacaa acttctcgtt agctactttg aagataggca      5040
     ggctaaggta gtttggggaa caaatcatgt ctccaagcag gcaactaggg gctgtccgca      5100
     gggttcggtt ttaggaccct cgggctggaa ccttggattc gatccgctgc tccgcagcct      5160
     cgagcaaggt gtagtgacag agggaggcgg aaaactccca ataaacttcg ttgcgtatgc      5220
     ggatgacttg gccgtactag tcgaagggga ctctagggcg gaaatagaaa aagtaggaaa      5280
     ggcggttgta aagcatatcg tcgaaaaatg ctcggctata aaattggagg tttcggaatc      5340
     caagacggta ggaatcttcg ttaaaaagcc taaggtaata ggttcaaaag cggtaaaaat      5400
     aaaccggaaa gaccgccgca agggaggagc gcgaaatccg aaaatagagt tgggcgggaa      5460
     atcgatcagt tttgaacagt cggtacgtta tcttggcgtg catttcgatg caaacttggg      5520
     cattagcgcc cactgcaaat atcttaggga aaagttagta ccgctcttta gcgacttgcg      5580
     taaactggca caatgccagt ggggtctggg acacagggcg ttggagacga tatacaaggg      5640
     tgtattcgtc ccaacggttt gctacgcatc cgcggcgtgg tacaaggagg gagcgcatac      5700
     cgataggatt ctcgaagatc tgcacaggca gatcctcata gctattacac gatgttaccg      5760
     atcgacatct tacgaggccg cgtgcgtact agcgggaact ctcccgatct gtatccaact      5820
     tagggttagc gtggcgaagt atcacctgag aaaaggtgaa gacgcggaga taggtggcgt      5880
     cgtaattaga cacgacccag agggtctaaa ggaaaattat aatagggttc ttgagatagc      5940
     gaatgagatg tggcaggcgc gttgggaggc atcggaacag ggcaatgcca ctcgcgaact      6000
     tttcttccca gacgtagttg ccagggttaa aagcgactgg atccgtccag atcacttcac      6060
     cgcgcaagtt ctcacgggtc acgggtactt taatgagaaa ctccaccagc tctctttggc      6120
     aaaggcagcg gcttgcttct gttgcggcga acccgacaac aacttacatt tccttctaga      6180
     atgccctgcc ttcgctgaat tccgcgatga gctgataact ccgatttcgg gtgggctaga      6240
     ggcgccggaa gccacgctta tgttagtatc ttccccagaa gggttcgcgg ctttgaaaga      6300
     atacagtaga gtagcattcg aatgtaagag gcaattagaa aatgccctta cggagtccga      6360
     cgatggatta agcagtgaga gtgaggaata gagtgactga ggtggtgggt gaaaggaaga      6420
     gctgggtgaa agaatgtcta agttaggcaa acaaacgcga agtcaaaagc atgcttggct      6480
     tggccctcgc gaaagtcgcc ttagggctgg actcgcgaaa caaactcgtt cgaaacttgg      6540
     ccatcgtccg cgtctaacgc gtaaggcccc gtggaaggtc gctaaatgct tgacacgcga      6600
     gtgcatgctc gatcgtaaaa atctggccgt cgaccgaatt gaccatcttg ggtctaccaa      6660
     agaaaatagt aaattcaaga ataaatttgg tgtgcttgtg cgttactgca aatatagatc      6720
     acgcctctcg aacgaggagt gtagttaggg cctttagaac cttcgcctaa aacatcatgg      6780
     aggagatgtt gaaggtgtcc tgtccccaag cattgttcgc tggcgacaag ggctctggct      6840
     gaaggattag aacagagccg ctcgttttgc agcggctcaa agcaggactt ttatcctgtc      6900
     cccgagtgca cctttcgaag aaggtgcgcc cggcattatt ttattattac taacaacatg      6960
     tatttctcct aacaggtaca aacaaaatta gtggagatcc gggcgggatc tcgcgaatgc      7020
     gccttcccgt ggttccccgt ggacggtccg gtggatggta gagcttgctc accatcccgc      7080
     tatgactgac taaagcattc gtcccagttg acagattgtc cccgcacagc catcctcgga      7140
     agaccgggcg ggtacaatct gttgatcgcc aatgggcact tgaatttttc caggaacgtc      7200
     ctccttttgg gtggttcgat agatggtgga cggaaaacaa ggtcgcgtat gcttatggcg      7260
     aggtagcgag tccaaataac atcagggcta accgaaatta a                          7301
//
ID   R1D_NLo     repbase;    DNA;    INV; 7071 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   longicornis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1D_NLo.
XX
OS   Nasonia longicornis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7071
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           791..1177
FT                 /product="R1D_NLo_1p"
FT                 /note="broken."
FT                 /translation="LSRAVASSARGGWELQARKRERNSAAGGRRRDSRPLR
FT                 SSLLSLLLPPRVACSLHLDSCRGVGGIFTLGTFRDRKQCVWNQKAMRVESR
FT                 SNACQLILSLKFTCVRKTSRPLGSASHVRNFSKFRKAMRVD"
FT   CDS           2625..6158
FT                 /product="R1D_NLo_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KLKITMPGPQKKNVAEVQPEERSPTTPGNPLVAESGR
FT                 LLTGAREDLEHPSVRTWPVRSGGGLRRLGEGEVGLRAVSVRLVRDERIEKM
FT                 ARKTVEVEEPGSKNEIRFLQINAGGGQLVNAEICELIASKKIDIVLAQEPY
FT                 SKVNKGSRYFTGLRRASRAICLKSAGTKTAPKAFVAVPNPDFHAFFVSALS
FT                 TQHCVVAEVHTPSVTFFAVSMYFQFCDDIEVHLGQLEKVLENLSGQKVVIG
FT                 IDANAESSLWSPRGTNEKGEKLERLIAAFGLHVVNDRTQPPTFEERGVSSY
FT                 IDVTLVSGSMIAEVQSWKVKRDWTSSDHNAIVFKITTVAQTDRVDSSRFNI
FT                 RRADWGLLDSTIKELSVSHLDHIILDSAEEVERMADALQKVLYEACETAIP
FT                 RRRRIRKNNPWWTRELTDKKSELYSARRRMQQQWSLPGHSLRKAEYRALLR
FT                 DYCRSVKGAKVGSWQEVVTVRGNEEPWGVVYKQLRGKLQNERTLSSVRCGD
FT                 TESMSMLETANRLLEVHVPDDTPFNETPEQAQIRESINSPPETEDAAPFEQ
FT                 WEIALILASLKNNKAPGFDLLEVRVLKAAIKAIPHHFLRLFNACLEHGVFP
FT                 RAWKQASLIFLPKGGKDSNDSKSYRPISLLPVTGKLYERLVKRRLSDTALG
FT                 PDMISDRQFGFRAGMSTEDAIIELRRLTAASPKKQVAALLFDVKGAFDCIW
FT                 RPAILQSLKEKNCPKNVYKLLVSYFEDRQAQVVWGTNQVSKQATRGCPQGS
FT                 VLGPSGWNLGFDPLLRSLEQGVVTEGGGKLPINFVAYADDLAVLVEGDSRA
FT                 EIEKVGKAVVKHIVEKCSAIKLEVSESKTVGIFVKKPKVVGSKAVKINRKD
FT                 CRKGGARNPKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPL
FT                 FSDLRKLAQCQWGLGHRALETIYKGVFVPTVCYASAAWYKEGAHTDRILED
FT                 LHRQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSMAKYHLRKGEDAEI
FT                 GGVVIRHDPEGLKENYNRVLEVANEMWQARWEASEQGNATRELFFPDVVDR
FT                 VKSDWIRPDHFTSQVLTGHGYFNEKLHQLSLAKAAACLCCGEPDNNLHFLL
FT                 ECPAFAEFRDELITPISGGLEAPEATLMLVSSPEGFAALKEYSRVAFECKR
FT                 QLENALTESDEGLSSESEE"
XX
SQ   Sequence 7071 BP; 1834 A; 1776 C; 1869 G; 1592 T; 0 other;
     ggttgtttga agtactcaag gcaacagttc ttgttgcagg gtatggatcc ttctggaagt        60
     gccaatgata cagcgtctac gtcgcgctag atatcaacat ctctcccaca agttgggggg       120
     ccctttccaa agtgaagatt gggccgcgag atggccaata gtatcacggc taagttcgaa       180
     cgcgcaaaga tggggcagtg gaatcacctt atgagaacag gacaagattc ccctgtatgt       240
     gtcagagctg caggctcggt attgtatagc ataaaggatt acttggtggt attagcaaat       300
     acgaaattcc gggagcgctg agggttctcc cggggaagcg ctcccctaaa gaagtgtgga       360
     aggaaaaatt tttcctgcag aagcactctc gatgatcggt agatctattg ttatgccgta       420
     tcgagcttgt aagcctgggt caagggcccg actcaggttg cgagcccggt ggcccaattg       480
     tacacgaacc cgcccgttcg aacacctcaa ccgttgatat acgtgagcct cctttgggta       540
     agtgctacga taatcaacgg ttttcgaaag cgaatctgcc tctggcagcc caaactcccg       600
     tgcgtctctt gaggcgcacg tatccccttc cttccttcct tccttgcgct cccaaacgcc       660
     cgcgtaactc cagtgagtaa cgtgtggttt cttctaggcc gggtaggaat ttattagatg       720
     ataggtttta gataggatag aattagctct ggcactctgt gaccacttac ccccgtgggt       780
     aacgccgtaa ttatctcgcg cggtcgcctc gtcggctcgt ggcggctggg aactgcaagc       840
     gcgtaagcgc gagcggaact cggctgctgg gggtcgacgg cgcgatagta ggcctctccg       900
     atctagtctt ctttccctcc ttcttccacc tcgcgtggct tgctctctgc atcttgactc       960
     ttgtcggggt gtagggggca ttttcacgtt ggggactttt cgagatcgaa agcaatgcgt      1020
     gtggaatcaa aaagcaatgc gtgtagaatc aagaagcaat gcgtgtcagt tgatacttag      1080
     tcttaaattc acttgcgtcc gtaagacgag ccgaccatta gggtcggcaa gtcacgttag      1140
     gaacttttcc aaattccgaa aagcaatgcg tgtcgattga caaaatagag tttagcttca      1200
     ctagcatcca taagacgagc cggccatttg ggccggcaag tcacgttaag gactttttca      1260
     aattcttcca tttgagaaag caatgcgtat caactgacaa caaaatcata gccggccatt      1320
     agggccggca agtcacgtta gggacttttt catattttcc acgcgcccca agagtagaat      1380
     caccccgcga acataaactc aacttcctct caacttcctc tctctctttt ctatactttc      1440
     acgcacacat acacactcac aacaaacaca aaacacgatg caggccgcgc atctgggcca      1500
     gtttcgctga ttcagcgtta gggtgagacc aggtaacttt gcaggcatcg ttcacataca      1560
     cacacacaaa caatataacc aactaaccac acgatacagg ccgcgcactt gggccagttt      1620
     cgctgtcaca gcgttagggt gagaccaagt aactttgccg gcatcaacca cgaacacaca      1680
     tactaacact ttcgacgcag gccgcgcact tgggccagtt tcgctgtcac agcgttaggg      1740
     cgagaccaag taactttgcc ggcataaaat aactcctttt cttaacttag actcttctcc      1800
     tctaaactta gctaaatcag gcacgcgagc gagcgctctt ctgctatctg cgcactctaa      1860
     tattaatccg aaaagggatt cgcgaccccc tagctcaagg cggcctgaga aagccaggtt      1920
     cgacgccagt ttccccgtga caggcaatag aactcttagc aactaatgtg tcttccgtaa      1980
     gtccgcgtgc gtgaccccat aggtaccgct atgttgcact gaaaatcatc tcgcgtaata      2040
     agagctcgac gtgctcatgt gttgcgttgt ctttcctaag ttatctagct tgggccgaag      2100
     gagggctagc cttctcggtc ttacagtgca actagccagg cttacatagc aatctcaggt      2160
     actctttaag tcgaaaactc tagtcgcgtc cggcctgtca cgggaagaaa tagaatacac      2220
     gaattaaagc cacgcgccgc gtatcgtgca gggatgggta aacagtctgc gcggaccatg      2280
     taggttcacg acttcacagt cgctaggagg cggagccgta agccccgtgt aaaaccagag      2340
     gcacctcctg ggccgcgtga tagtttggga gcccgggccg tcagttagcc agacggttag      2400
     gctgctccgt aacagcacgt gtaaaagctt cgtcgccgga gcacttggtt ggctacctat      2460
     ggggacgtgt aacggcacgg agtgctgccg cggctgctga aagttccgct ctctcttttg      2520
     ttcgcgcttt ttggcgcatg gtaaccgcgc aggcgtccac ccagtgggaa acaaattcgt      2580
     cctaaattaa ggcttctaac aaatatgctt attcctacag gtaaaaactc aaaatcacaa      2640
     tgccaggtcc acaaaagaaa aacgttgctg aggtgcagcc agaggagagg tccccaacca      2700
     ctccagggaa tcccctcgtc gccgagtcgg gccgtcttct gaccggtgcg agggaagacc      2760
     ttgagcatcc ctcagtcagg acctggccgg ttaggagcgg tggcgggcta cgacggcttg      2820
     gggaaggtga agtcggcctc cgagccgtgt ctgttagatt agtccgcgac gagcgcatcg      2880
     aaaagatggc acggaagaca gtagaggtcg aggagccggg ctccaaaaac gagattaggt      2940
     tcttgcaaat aaatgcggga ggggggcagt tagtaaacgc cgaaatttgc gaattaatag      3000
     cgtcaaaaaa gatagacata gttctggctc aggagccata ctcgaaagtt aacaaagggt      3060
     cgcgttattt cacaggcctt agacgtgcaa gtcgggcaat atgtctaaag agcgcaggca      3120
     caaagacggc tcctaaagcc ttcgtagccg tgccaaaccc cgacttccac gccttcttcg      3180
     tctcagcgtt aagcacccaa cactgcgttg ttgccgaggt gcatacgcct agcgtcacgt      3240
     ttttcgccgt ttcaatgtac tttcaattct gcgacgatat tgaagtacac ctcgggcaac      3300
     tagagaaagt attagagaac ctcagcggcc aaaaagtagt aataggcatt gacgcaaacg      3360
     cggaatcctc gctttggtcc cctcgtggga caaacgagaa aggagaaaag ctcgagcgac      3420
     taatcgcggc tttcggtctc cacgtagtaa acgacagaac ccaacctccg accttcgaag      3480
     agaggggagt ttcgtcctac atcgacgtga ctctcgtctc ggggtccatg atcgcggagg      3540
     tacagtcctg gaaagtgaaa cgggactgga cctccagtga ccataacgcg atagtcttta      3600
     aaatcactac cgtagcccaa acggaccgag tggactccag tcgattcaac atcagacgag      3660
     ctgactgggg cctgctcgac tctacgataa aggagttgtc tgtttcccac cttgaccaca      3720
     ttatcttgga tagcgcagag gaggtcgagc gaatggccga tgctctccag aaagtcctgt      3780
     acgaagcgtg cgaaaccgcc ataccgcgta ggcgccgtat ccggaaaaat aacccctggt      3840
     ggactcgaga acttaccgac aaaaagtccg agctctacag cgctaggcgt agaatgcagc      3900
     aacagtggag cctccctgga cacagtttgc gaaaagcaga atatcgggct ctcttgcgcg      3960
     attactgccg atcggtgaaa ggggccaagg tcggcagctg gcaggaagtc gtcacagtgc      4020
     gcggaaatga ggagccatgg ggggtagttt acaagcagct cagaggcaag ctgcaaaacg      4080
     aaagaaccct cagttccgtt cggtgtgggg atacggagtc aatgtcgatg ttggagacgg      4140
     ccaaccgtct gcttgaggtg cacgtcccag acgatacacc tttcaatgaa acccccgagc      4200
     aggcacagat tagagaatca ataaactcac cgcccgagac cgaagatgcc gcacctttcg      4260
     agcaatggga gatagctctc atcctcgcat ccctcaaaaa caataaagct cccggcttcg      4320
     accttcttga agtcagagtc ttaaaggctg ccatcaaagc cattcctcat cacttcctgc      4380
     ggctcttcaa cgcctgccta gagcacggcg tcttcccccg agcctggaaa caggcttccc      4440
     tcattttcct cccaaaagga ggcaaagata gtaacgactc gaaatcgtac cgacccatca      4500
     gtctccttcc ggttacaggt aaactctacg agcggttagt aaaaaggaga ctatccgata      4560
     cagcgctagg accagacatg atctccgaca ggcaattcgg cttcagggct ggcatgtcta      4620
     ccgaagacgc gatcatcgag ctgcgcagac ttacagccgc ttcccctaag aagcaggttg      4680
     ctgcgcttct tttcgatgtt aaaggcgcct ttgactgcat ttggcgcccg gccatcctcc      4740
     aaagcctcaa agagaaaaac tgtcccaaaa atgtatataa acttctcgtt agctactttg      4800
     aagataggca ggctcaggta gtttggggga caaatcaagt ctccaagcag gcaactaggg      4860
     gctgtccgca gggttcggtt ttaggaccct cgggctggaa ccttggattc gatccgctgc      4920
     tccgcagcct cgagcaaggt gtagtgacag agggaggcgg aaaactccca ataaacttcg      4980
     tcgcgtatgc ggacgacttg gccgtactag tcgaagggga ctctagggcg gaaatagaaa      5040
     aagtaggaaa ggcggtagta aagcatatcg tcgaaaaatg ctcggctata aaattggagg      5100
     tttcggaatc taagacggta gggatcttcg ttaaaaaacc taaggtagta ggttcaaaag      5160
     cggtaaaaat aaaccggaaa gactgccgta agggaggagc gcgaaatccg aaaatagagt      5220
     tgggcgggaa atcgattagt tttgaacagt cagtacgtta tcttggcgtg catttcgatg      5280
     caaacttggg cattagcgcc cactgcaaat atcttaggga aaagttagta ccgctcttta      5340
     gcgatttgcg taaactggca caatgccagt ggggtctggg acacagggcg ttggagacga      5400
     tatacaaggg tgtattcgtc ccaacggttt gttacgcgtc cgcagcgtgg tacaaggagg      5460
     gagcgcatac cgataggatt ctcgaagatc tgcacaggca gatcctcata gctatcacac      5520
     gatgttaccg atcgacatcg tacgaggccg cgtgcgtact agcgggaaca ctcccgatct      5580
     gtatccaact tagggttagc atggcgaagt atcacctgag aaaaggtgaa gacgcagaga      5640
     taggcggcgt agtaattaga cacgacccag agggtctaaa ggaaaattac aatagggttc      5700
     ttgaggtcgc gaatgagatg tggcaggcgc gttgggaggc atcggaacag ggcaatgcta      5760
     ctcgcgaact tttcttccca gacgtagttg acagggttaa aagcgactgg atccgtccag      5820
     atcacttcac ctcgcaggtt ctcacgggtc acgggtactt taatgagaaa ctccaccagc      5880
     tctctttggc aaaggcagcg gcttgcctct gttgcggcga acccgacaac aacttacatt      5940
     ttcttttaga atgccctgcc ttcgctgaat tccgcgatga gctgataact ccgatttcgg      6000
     gtgggcttga ggcgccggaa gccacgctaa tgttagtttc ttccccagaa gggttcgcgg      6060
     ctttgaaaga atacagtaga gtagcgttcg aatgtaagag gcaattggaa aatgccctta      6120
     cggaatccga cgaaggatta agcagtgaga gtgaggaata gagtgactga ggtggtgggt      6180
     gaaaggaaga gctgggtgaa agaatgtcta agctaggcaa acaaacgcga agtcaaaagc      6240
     atgcttggct tggccctcgc gaaagtcgcc ttagggcttg actcgcgaaa taaactcgtt      6300
     cgaaacttgg ccatcgtccg cgtctcacgc gtaaggcccc gtggaaggtc gctatatgct      6360
     tgacacgcga gtgcatgctc gatcgtaaaa atttggccgt cgaccgaatt gaccatcttg      6420
     ggtctaccaa agaaaaaagt aaattcaaga ataaacttgg tgtgcttgtg cgatactgca      6480
     actaaaaagc acgcctctcg aacgaggagt gtagttaggg cctttagaac cttcgcctaa      6540
     aacatcgtgg aggagatgtt gaaggtgtcc tgtccccaag cattgttcgc tggcgacaag      6600
     ggctctggct gaaggattag aacagagccg ctcgttttgc agcggctcaa agcaggattc      6660
     ttgtcctgtc cccgagcgca cctttcgaag aaggtgcgcc cggcataatt atttatttac      6720
     taacaacatg tatttctcct aacaggtaca aacaaaatta gtggagatcc aggcgggatc      6780
     tcgcgaatgc gccttcccgt ggttccccgt ggacggtccg gtggatggta gagcttgctc      6840
     accatcccgc tatgactgac taaagcattc gtcccagttg actgattgtc cccgcacggc      6900
     catcctcgga agaccgggcg ggtacaatct gttgatcgcc aatgggcact tgaatttttc      6960
     caggaatgtt ctcctttcgg gtggttcgat ggatggtaga tggaaaacaa ggtcgcgtat      7020
     gcttatggcg aggaagcgag tccaaataac atcagggcta accgaaatta a               7071
//
ID   R1D_NVi     repbase;    DNA;    INV; 7035 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia
DE   vitripennis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1D_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7035
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           784..1146
FT                 /product="R1D_NVi_1p"
FT                 /note="broken."
FT                 /translation="RRNYLARSPRRLVAAGNCKRVSASGTRLLGVDGAIVG
FT                 LSDLVFFSSFFSPPRVACSLHLGYCQGVGGIFTLGTFRDRKQCVWNQKAMR
FT                 VESKSNACGIKKQCVWNLKAMRVESNQKAMRVS"
FT   CDS           2589..6122
FT                 /product="R1D_NVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KLKITMPGPQKKNVAEVQLEERSPTTPGNPLVAESGR
FT                 LLTGAREDLEHPSVRTWPVRGGGGLRRLGEGEVGLRAMSVRLVRDERIEKM
FT                 ARKTVDVEEPGSKNEIRFLQINAGGGQIVNAEICELIASKKIDIVLAQEPY
FT                 SKVNKGSRYFTGLRRASRAICLKSAGTKTAPKAFVAVPNPDLHAFFVSALS
FT                 TQHCVVAEVHTPSVTFFAVSMYFQFCDDIEVHLGQLEKVLENLRGQKVVIG
FT                 IDANAESSLWSPRGTNEKGEKLERLIAAFGLHVVNDRTQPPTFEERGVSSY
FT                 IDVTLVSGSMIAEVQSWKVKRDWTSSDHNAIVFKITTVAQTDRVDSSRFNI
FT                 RRADWGLLDSTIKELSVSHLDHIVLDSAEEVEQMADALQKVLYEACETAIP
FT                 RRRRIRKNNPWWTRELTDKKSELYSARRNMQQQWSLPGHSLRKAEYRALLR
FT                 DYCRSVKGAKVGSWQEVVTVRGNEEPWGVVYKQLRGKLQNERTLSSVRCGD
FT                 TESMSMLETANRLLEVHVPDDTPSNETPEQAQIRESINSPPETEDAAPFEQ
FT                 WEIALILASLKNNKAPGFDLLEVRVLKAAIKAIPHHFLRLFNACLEHGVFP
FT                 RAWKQASLIFLPKGGKDSSDSKSYRPISLLPVTGKLYERLVKRRLSDTALG
FT                 PDMISDRQFGFRAGMSTEDAIIELRRLTAASPKKQVAALLFDVKGAFDCIW
FT                 RPAILQSLKEKDCPKNIYKLLVSYFENRQAQVVWGTNQVSKQATRGCPQGS
FT                 VLGPSGWNLGFDPLLRSLEQGVVTEGGGKLPINFVAYADDLAVLVEGDSRA
FT                 EIEKVGKAVVKHIVERCSAIKLEVSESKTVGIFVKKPKVVGSKAVKINRKD
FT                 CRKGGARNPKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPL
FT                 FSDLRKLAQCQWGLGHKALETIYKGVFVPTVCYASAAWYKEGAHTDRILED
FT                 LHRQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSVAKYHLRKGEDAEI
FT                 GGVVIRHDPEGLKENYNRVLEVANEMWQARWEASEQGNATRELFFPDVVAR
FT                 VKSDWIRPDHFTSQVLTGHGYFNEKLHQLSLAKAAACICCGEPDNNLHFLL
FT                 ECPAFAEFRDELITPVSGGLEAPEATLMLVSSPEGFAALKEYSRVAFECKR
FT                 QLENALTESDEGLSSESEE"
XX
SQ   Sequence 7035 BP; 1819 A; 1741 C; 1867 G; 1608 T; 0 other;
     ccggttggtt gaagtactca aggcaacagt tcttgttgca gggtatggat ccttctggaa        60
     gtgccagtga tacagcgtct acgtcgcgct aggtatcaac atctctccca caagttgggg       120
     ggccctttct aaagtgaaga ttgggccgcg agatggccaa tagtatctcg gctaagttcg       180
     aacgcgcaaa gatggggcag tggaatcacc ttatgagaac aggacaagat tcccctgtat       240
     gtgtcagagc tgcaggctcg gtattgtata gcataaagga ttacttggtg gtattagcaa       300
     atacgaattt ccgggagcgc tgagggttct cccggggaag cgctccctaa aagaagtgtg       360
     gaaggaaaaa tttttcctgc agaagcactc tcgactcttg atgatcggta gatctgttgt       420
     tatgccgtat cgagcttgta tgcctgggtc aagggcccga ctcaggttgc gagcccggtg       480
     gcccaattgt acacgaaccc gcccgttcga acacctcaac cgttgatata cgtgagcctc       540
     ctttgggtaa gtgctacgac aatcagcggt tttcgaaagc gaatctgcct ctggcagccc       600
     aaactcccgt gcgcctcttg aggcgcacgt attcccttcc ttccttgcgc tcctaaacgc       660
     ccgcgtaact ccagtgagta acgtgtggtt tcttctaggc cgggtaggaa tttattaggt       720
     gataggtttt agttaggata gaattagctc tggcactctg tgaccactta cccccgtggg       780
     taacgccgta attatctcgc gcggtcgcct cgtcggctcg tggcggctgg gaactgcaag       840
     cgcgtaagcg cgagcggaac tcggctgctg ggggtcgatg gcgcgattgt aggcctctcc       900
     gatctagtct tcttttcttc cttcttttct ccacctcgcg tggcttgctc tctgcacctt       960
     ggctattgtc agggtgtggg gggcattttc acgttgggga cttttcgaga tagaaagcaa      1020
     tgcgtgtgga atcaaaaagc aatgcgtgtg gaatcaaaaa gcaatgcgtg tggaataaaa      1080
     aagcaatgcg tgtggaatct aaaagcaatg cgtgtggaat caaatcaaaa agcaatgcgt      1140
     gtcagttgat acttagtctt agattcactt gcgtcagtaa gacgagccga ccattagggt      1200
     cggcaagtca cgttaggaac ttttccaaat cccgaaaagc aatgcgtgtc gattgacaaa      1260
     atagatttta gcttcactag catccataaa acgagccggc cattagggcc ggcaagtcac      1320
     gttaaggact ttttcaaatt tttcatttga gaaagcaatg cgtatcaact gacaactaaa      1380
     tcatagccgg ccattagggc cggcaagtca cgttagggac tttttcatat tttccacgcg      1440
     ccccaagagt agaatcaccc cgcgaatata aactcaactt cctctctctc ttttctatac      1500
     tctcacacac acatacgcac ccacaacaaa cacaaaaaca cgatgcaggc cgcgcatctg      1560
     ggccagtttc gctgtcacag cgttagggtg agaccaggta actttgccgg catcaatcac      1620
     gaacacacac acactaacac ttttcgatgc aggccgcgca cttgggccag tttcgctgtc      1680
     acagcgttag ggtgagacca agtatctttg ccggcataaa ataactcctt ttcttaacta      1740
     agacaacttc tcttctcttc tcctctaaac ttagctaaac caggcacgtg agagagcgct      1800
     ctcctgccac ctgcgcactc taatattaat tcgaaaaggg attcgcgatc ctctagctca      1860
     aggcggcctg agaaagccag gttcgacgcc tgtttccccg tgacaggcac ctagaactct      1920
     tagcaactaa tgtgtcttcc gtaagtccgc gtgcgtgacc ccataggtac cgctatgttg      1980
     cactgaaaat catctcgcga aataagagct cgtcgtgctc atgcgttgcg ttgtcttccc      2040
     taagttatct agcttgggcc gatggagggc tagccttctc ggtcttacag tgcaactagc      2100
     aaaggcttac atagcaatct caggtactct ttaagttgaa aactctagtc gcatctggcc      2160
     tgtcacggga agaaatagaa tacatgaatt aaagccacgc gccgcgtatc gtgcagggat      2220
     gggtaaacag tctgcgcgga ccatgtaggt tcacgacttc acagtcgcta ggaggcggag      2280
     ccgtaagccc cgtgtaaaac cagaggcacc tcctgggccg cgtgatagtt tgggagcccg      2340
     ggccgtcagt tagccaggcg gttaggctgc tccgtaacag cacgtgtaaa agcttcgtcg      2400
     ccggagcact tggttggcta cctatgggga tgtgtaacgg cacggagtgc tgccgcggct      2460
     gctgaaagtt ccgctctctc ttttgttcgc gctttttggc gcatggtaac cgtgcaggcg      2520
     tccacccagt gggaaacaaa ctcgtcctaa attaaggctc taatacatat acttattcct      2580
     gcaggtaaaa actcaaaatc acaatgccag gtccacaaaa gaaaaacgtt gctgaggtgc      2640
     agctagagga gaggtcccca accactccag ggaatcccct cgtcgccgag tcgggccgtc      2700
     ttctgaccgg tgcgagggaa gaccttgagc atccctcagt caggacctgg ccggttaggg      2760
     gcggtggcgg gctacgacgg cttggggaag gtgaagtcgg cctccgagcc atgtctgtta      2820
     gattagttcg tgacgagcgc atcgaaaaga tggcacggaa aacagtagat gtcgaggagc      2880
     cgggctccaa aaacgagatt aggttcttgc aaataaacgc gggaggaggg cagatagtaa      2940
     acgccgaaat ttgcgaatta atagcgtcaa aaaagataga catagttctg gctcaggagc      3000
     cgtactcgaa agttaataaa gggtcgcgtt atttcacagg ccttagacgt gcaagtcggg      3060
     caatatgtct aaagagcgca ggcacaaaga cggctcctaa agccttcgta gccgtgccaa      3120
     accccgactt gcacgccttc ttcgtctcag cgttaagcac ccaacactgc gttgttgccg      3180
     aggtgcatac gcctagcgtc acgtttttcg ccgtttcaat gtactttcaa ttctgcgacg      3240
     atattgaagt acacctcggg caactagaga aagtattaga gaacctcaga ggtcaaaagg      3300
     tagtaatagg cattgacgca aacgcggaat cctcgctttg gtcccctcgt gggacaaacg      3360
     agaaaggaga gaagctcgag cgactaatcg cggctttcgg cctccacgta gtaaacgaca      3420
     gaacccaacc tccgaccttc gaagagaggg gagtttcgtc ctacatcgac gtgactctcg      3480
     tctcggggtc catgatcgcg gaggtacagt cctggaaagt gaaacgggac tggacttcca      3540
     gcgaccataa cgcgatagtc tttaaaatca ctaccgtagc ccaaacggat cgagtggact      3600
     ccagccgatt caacatcaga cgagctgact ggggcctgct cgactctacg atcaaggagt      3660
     tgtctgtttc ccaccttgac cacattgtct tggatagtgc agaggaggtc gagcaaatgg      3720
     ccgatgctct ccagaaagtc ctgtacgaag cgtgcgaaac cgccataccg cgtaggcgcc      3780
     gtatccgaaa aaataacccc tggtggactc gagaacttac cgacaaaaag tccgagctct      3840
     acagcgctag gcgtaatatg cagcaacagt ggagcctccc tggacacagt ttgcgaaaag      3900
     cagaatatcg ggctctcttg cgcgattact gccgatcggt gaaaggggcc aaggtcggca      3960
     gctggcaaga agtcgtcaca gtgcgcggaa atgaggagcc atggggggta gtctataagc      4020
     agctcagagg caagctgcaa aacgaaagaa ccctcagttc cgttcggtgt ggggatacgg      4080
     agtcaatgtc gatgttggag acggccaacc gtctgcttga ggtgcacgtt ccagacgata      4140
     caccttccaa cgaaaccccc gagcaggcac agattagaga atcaataaac tcaccgcccg      4200
     agaccgaaga tgccgcaccc ttcgagcaat gggagatagc tctcattctc gcatccctca      4260
     aaaacaacaa agctcccggc ttcgaccttc ttgaagtcag agtcctaaag gctgccatca      4320
     aagccattcc tcatcacttc ctgcggctct tcaacgcctg cctagagcac ggcgtcttcc      4380
     cccgagcctg gaaacaggct tccctcattt tcctcccaaa aggaggcaaa gatagtagcg      4440
     actcgaaatc gtaccgaccc atcagtctcc tcccggttac aggtaaactc tacgagcggt      4500
     tagtaaaaag gagactatcc gatacagcgc taggaccaga catgatctcc gacaggcagt      4560
     tcggcttcag ggctggcatg tctactgaag acgcgatcat cgagctgcgc agacttacag      4620
     ccgcttcccc taaaaagcag gttgctgcgc ttcttttcga tgttaaaggc gcctttgact      4680
     gcatttggcg cccggccatc ctccaaagcc tcaaagagaa agattgtccc aaaaatatat      4740
     acaaacttct cgttagctac tttgaaaata ggcaggctca ggtagtttgg gggacaaatc      4800
     aagtctccaa gcaggcaact aggggctgtc cgcagggttc ggttttagga ccctcgggct      4860
     ggaaccttgg attcgatccg ctgctccgca gcctcgagca aggtgtagtg acagagggag      4920
     gcggaaaact cccaataaac ttcgtcgcat atgcggatga cttggccgta ctagtcgaag      4980
     gggactctag ggcggaaata gaaaaagtag gaaaggcggt cgtaaagcat atcgtcgaaa      5040
     gatgctcggc tataaaattg gaggtttcgg aatctaagac ggtagggatt ttcgttaaaa      5100
     aacctaaggt agtaggttca aaagcggtaa aaataaaccg gaaagactgc cgtaagggag      5160
     gagcgcgaaa tccgaaaata gagttgggcg ggaaatcgat cagttttgaa cagtcggtac      5220
     gttatcttgg cgtgcatttc gatgcaaact tgggcattag cgcccactgc aaatatctta      5280
     gggaaaagtt agtaccgctc tttagcgact tgcgtaaact ggcacaatgc cagtggggtc      5340
     tgggacacaa ggcgttggag acgatataca agggtgtatt cgtcccaacg gtatgttacg      5400
     cgtccgcggc gtggtacaag gagggagcgc atacagatag gattctcgaa gatctgcaca      5460
     ggcagatcct catagctatt acacgatgtt accgatcgac atcttacgag gccgcgtgcg      5520
     tactagcggg aactctcccg atatgtatcc aacttagggt tagcgtggcg aagtatcacc      5580
     tgagaaaagg tgaagacgcg gagataggcg gcgtcgtaat tagacacgac ccagagggtc      5640
     taaaggaaaa ttataatagg gttcttgagg tcgcgaatga gatgtggcag gcgcgttggg      5700
     aggcatcgga acagggcaat gctactcgcg aacttttctt tccagacgta gttgccagag      5760
     ttaaaagcga ctggatccgt ccagatcact tcacctcgca ggttctcacg ggtcacgggt      5820
     actttaatga gaaactccac cagctctctt tggcaaaggc agcggcttgt atctgttgcg      5880
     gcgaacccga caacaactta cacttccttt tagaatgccc tgccttcgct gaattccgcg      5940
     atgagctgat aactccggtt tcgggtgggc ttgaggcgcc ggaagccacg ctaatgttag      6000
     tatcttcccc agaagggttc gcggctttga aagaatacag tagagtagcg ttcgaatgta      6060
     agaggcaatt ggaaaatgcc cttacggaat ccgacgaagg attaagcagt gagagtgagg      6120
     aatagagtga ctgaggtggt gggtgaaagg aagagctggt gaaaaatgtc taagttaggc      6180
     aaacaaacgc gaagtcaaaa gcatgcttgg cttggccctc gcgaaagtcg ccttagggct      6240
     tgactcgcga aataaactcg ttcgaaactt ggccatcgtc cgcgtctcac gcgtaaggcc      6300
     ccgtggaagg tcgctatatg cttgacacgc gaatgcatgc tcgatcgtaa aaatttggcc      6360
     gtcgaccgaa ttgaccatct tgggtctacc aaagataaca gtaaattcaa gaataaattt      6420
     ggtgtgcttg tgcgttactg caactacaaa tcacgcctct cgaacgagga gtgtagttag      6480
     ggcctttaga accttcgcct aaaacatcgt ggaggagatg ttgaaggagt cctgtcccca      6540
     agcattgttc gctggcgaca agggctctgg ctgaaggatt agcacagagc cgctcgtttt      6600
     gcagaggctc aaagcaggac ttttgtcctg tccccgagcg cacctttcga agaaggtgcg      6660
     cccggcatta ttattttatt tactaacaac atgtatttct cctaacaggt acaaacaaaa      6720
     ttagtggaga tccaggcggg atctcgcgaa tgcgccttcc cgtggttccc cgtggacggt      6780
     ccggtggatg gtagagcttg ctcaccatcc cgctatgact gactaaagca ttcgtcccag      6840
     ttgactgatt gtccccgcac ggccatcctc ggaagaccgg gcgggtacaa tctgttgatc      6900
     gccaatgggc acttgaattt ttccaggaac gttctccttt cgggtggttc gatagatggt      6960
     ggacggaaaa caaggtcgcg tatgcttatg gcgaggtagc gagtccaaat aacatcaggg      7020
     ctaaccgaaa ctaaa                                                       7035
//
ID   R1E_NGi     repbase;    DNA;    INV; 7736 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Nasonia giraulti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1E_NGi.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-7736
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           2440..3930
FT                 /product="R1E_NGi_1p"
FT                 /translation="DIGVLGQYRRETRQYDQLQSMASNKKHTPAILVESEN
FT                 APEHTLNPPTSTDAAANLGFASNTGLQRDRHRSISSVSSIASDENSSAKTI
FT                 GDTFAKRAKRKREEKVPDEVDSGNPLERRNHEIKEVRKTFEQATLELRSIC
FT                 SIEKDKNRCKLNKGDLNKFTSVLSAALQLVEDAITDKYDYGILLQQKNEQL
FT                 KQLREVLSARPRSYADAAGADRRMKQTLAPKRPPISSGANKPRPKNAGRPS
FT                 ATVVVTCGRENGESPKADDIKEKLMSAVNPAAEGIRIKSVRVAKTGKVYVE
FT                 TNSSEDGKKLSELPQLRDAGLIAEVPKGRKPRLILYDVPRTMEPSEVGAAL
FT                 LQMNADVFEGIERSAFEKDCNFLFKTGKRDADVVHWVLETSSELRDRLREK
FT                 ERLYLGWRRCRIQDYISLTRCYKCQGLGHIGKYCKAKEETCGHCGGQGHKK
FT                 ESCPKKDQPAKCALCLRRDKPSDHSVMDPKCPSFKSAYDVYTQSIDYGGPV
FT                 R"
FT   CDS           3891..7070
FT                 /product="R1E_NGi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RVHAKYRLRGPSAVIMASTINVLQHNLGRGKTSTAEL
FT                 RDAAAAVRASVLLVQEPHAREDIGVIGLGSLSNKVLTGAKTGERPWACVVI
FT                 TDRCLDVVVIPHLSSPFCVCAHVSTAVGDFHVVSAYFPPSQPLDSHLRMLG
FT                 RIHDGLRSSKVILGIDVNAWSMRWGSNTTDRRGQEVEEFLATTGWLVVNEP
FT                 GQLPTFSTANGESHIDVTLVGAGLSNLIREWNVREGWTSSDHRVIQITLGS
FT                 PEPRQLIRIPRYNIKRANWEGFRGNVISHLDTLDQAVTCSEHLERAATSLG
FT                 EIFHQASATNNNIPRKRHFIRSVPWWNRELTFWKRRVNRARRAFQGARRSS
FT                 GAPALRRIYSVLKREYNKKVYLAKTGSWREFVTLDGNEDAYGVANKIIRKR
FT                 FTPDTALSSISTHGGATLDWQDTAEKLLDALIPDCPPGDRMDLRELCLSFP
FT                 EGEAEACPHWTAGEVTRVIKSLPRSKAPGGDLIEAAMIKSLANSPEFIEAL
FT                 VGLYNKCLDIGVFPCTWKRGLIRVLLKSVEKDPADPGSYRPICLLPLFGKI
FT                 LEKLIKLRLSGVLNHPEYASANQYGFRAGRSTEDALYELRRNVNSSSKKYA
FT                 LALLYDAKAAFDHLWWPALIRELQQRGCPNNLLMLIGSYLSGRVVELTGSY
FT                 NSLEKSVTRGCPQGSILGPDFWNIVFDTLLKLLEGLNLNIKIIAYADDLLV
FT                 LVESDSRRMLEVGGQEVTDTVQDWFVRNKLILSESKSEMILLKGALPSRDP
FT                 IIKINNRALALAESVKYLGVHVGERFSITKHLLAAGSKCRLVFDLLARSAR
FT                 ANWGLRFRSLDIMYKGIFLAVMCYGAGAWGDLVKTNQHRQTLLTIQRAILL
FT                 RVTKAYRTTSGDALCVIAGAIPLDLVIRERMILYMIRKNLEAGFGRYWFLP
FT                 GSSKVEAKRGLREAILREWQMRWETSSKGRETFAYFPDVAKRVGSDWVKPG
FT                 HYMAQALSGHGDFNAKLHSFRLKESPLCPCGMEETSSHLLFDCELWNDIRS
FT                 EFVAKLEEAGLEWPPQRQRLMDKDVYQIFDGYVTAVLREKAARAAAGQTQA
FT                 ANN"
XX
SQ   Sequence 7736 BP; 1800 A; 1891 C; 2363 G; 1682 T; 0 other;
     gtttaatggc caaggttcac ttgaaaactc tagggttgaa gtgctccggg gtcttaaaca        60
     agcgccaaga tctctgacgt ccacgtcgta ctagatgtcc acaacccccc gggccccagg       120
     accctcgggt ccttgtggcg tcgggaacgg ttggctaaca gaggcgggct aaactcgaac       180
     gcgtttagat gggacaggtg ggtatatctt tcgagagtag acaaccggcc cctgggttca       240
     tccggttaaa atggcgatac tttgtacacg gaccttcttt ccttcttact tctcgaacgc       300
     gtacctttcg aaagcgtact cgggcttcgg gcgtcgtctt gtctcctcgc gttcgcgtgt       360
     aggaggcttt gcggcgctgc ggggctcccc tgttgcgtgg agagtgctct tcgtgatgcg       420
     cctccagttg gctaaccttt ttggctgcta acactttgag actgacaagt tgtcggcgta       480
     gaccaggcgg tcggggatac gttgcccccg gccgtttcaa aggactatcc gcaaactcgc       540
     ctctctgatt cacaaatcgt gtcgccccac aaggcacgat ggaatgaatc agtaaggcga       600
     tgcggtaacg tctgagtctg cgttggtggc ttgttggtcg gcttttgaat gttgtgcgga       660
     tcgaggtggt tgtgggactc tcgaaccgat caggctacat ggccctcaac tcctcaaaag       720
     ttgcctctcg gactcttgga ctcttgatac cgcccgagag gggtgactgg tttgccgggt       780
     ttacctggtc tgctagtcgc tcctcgaagg tggtcgaatc gaaaagcaat gcgtgtgggg       840
     aaacttagag atttttcttt cctcttgcgt tgcttaatca gaaaagcaat gcgtgtgggg       900
     aaacttaggg atttttcttc ttgcgttgct caatcggaaa gcaatgcgtg tgggcagtgt       960
     cgggggtttc gccggggggt cggtctgctg ggcgacttgc acgcggagct atggttaaag      1020
     cgggttttgg tgagggaact cgtacgcgcg gggtcgatgt tccctcacgg acttagaata      1080
     tcaatagttg taaaagcaat gcgtgtgggg gactttaaaa tcattgtaga tttagaagca      1140
     atgcgtgtgg gggactttaa aattattata gatgtagaag caatgcgtgt ggaggatttt      1200
     aaaagtcatt atagatgtag aagcaatgcg tgtgggggac tctaaaaatc attatagatg      1260
     tagaagcaat gcgtgtgggg gactttaaaa aatcattata gatgtagaag caatgcgtgt      1320
     gggggacttt aaaattattg tagatgtaga agcaatgcgt gtggaggact ttaaaaatca      1380
     ttatagatgt agaagcaatg cgcgtggggt aaatcagaac ttagattggg agtagaagca      1440
     atgtgtgtgg gaaaacttgg cactatgttg ggttaaggca acgcgcgtat agctcgctcc      1500
     ggctggccga cccgcctgcg gggcatcccc tcacttacca ctttaatcga ctaggtcatg      1560
     gcgcgcggtt acgaatcccc tgcggctagc tcccgtctgg gctctgtccg gcgtgttatg      1620
     gggtgctccg cgtagaaatg ctccgcctgc tcggagagct atgcgtggag tctactctat      1680
     ccccggggtc cacccggggt cttaggactt atctctgtct cagccgtcaa cccgggtcgg      1740
     agcggcgaag actggcctga acggacgtac tttcttctag gtgtgcggag ggcggcaccc      1800
     gtcaatcgac ggactgcttg cctgtttgca ctggactctg ggggcgtatg ggctgggttc      1860
     gggtaaggtg cgaatcgcgt tatggggagg atcggccgca acggtgccct ggtcgcaagc      1920
     ctgccctgac cttggactct ctggttttcc cgttccgctg cgattctttt caagtcatcc      1980
     taacatcgag caattgtacg ggaggcatca aaggggggtt cgatcggggt agcgctcggt      2040
     ggcttcaggg gggcgccgcg gcgtcgcgga gcctctgggt ttgggggagt ccgaaaacct      2100
     ccacaaccct ggcgtggtga ccgtacgcgt caggttcatc aaaaccacgg ccccggtagc      2160
     cgccggggca aactttcggg aaagggtgta ctgctcgacg ggcacccagg ctagccggga      2220
     agcctcggga aaatcggtgg gaaactctcc gcaaaacacg ctccttaagc tcgatcttcg      2280
     caggcgggtg gggcatggga gggtggacat cgacaactcg gggcggaacg gcttgcgcgt      2340
     ctcctaaaag gacctcctta acccagaaga cggcagaggc cctgttatta cagggtagcc      2400
     tgatgggggc ggagactctt tgagcatggc cgttattagg acatcggagt tttaggtcag      2460
     taccggaggg agacgcgtca gtacgatcag ctacagtcca tggcatcaaa taaaaaacat      2520
     acacctgcga tcttagtgga gtcggagaat gcgccggagc atactctgaa cccacccacc      2580
     agcacagatg cggcggcaaa ccttgggttt gcgtcaaata cgggcctgca gcgcgacagg      2640
     caccggagta tctctagcgt ttcgagcata gctagcgacg aaaattcgag cgcgaaaacc      2700
     ataggcgata ctttcgcaaa aagggcgaag cggaaacggg aagaaaaggt tcccgacgag      2760
     gttgatagtg gcaaccccct cgaaaggcgg aaccacgaga tcaaagaggt ccggaagacc      2820
     ttcgagcagg caactctcga gctgagaagt atctgctcga ttgaaaaaga caagaaccga      2880
     tgtaaactta acaagggtga cctaaacaag tttacatcgg ttctcagtgc tgcactgcaa      2940
     ctggtcgagg atgctatcac tgataagtac gactacggca tcctcttaca gcagaaaaat      3000
     gagcagttaa agcagcttag ggaggtccta tcagcgcgcc cgaggtcgta tgcagatgca      3060
     gcaggagcag ataggcgaat gaagcagacg ctggcaccca agcgcccccc catcagcagt      3120
     ggcgcaaaca aacctaggcc caagaatgca gggaggccga gcgccacggt agtggtgacc      3180
     tgtgggagag agaacggcga aagcccaaaa gcggatgaca ttaaagaaaa attgatgtca      3240
     gcggtaaatc cggcggccga ggggatccgg atcaaaagcg tccgtgttgc taaaacggga      3300
     aaggtctacg tcgagacgaa cagcagcgag gacggtaaga aactctcgga gctgccacag      3360
     ctccgggacg cgggtctcat cgccgaggtg ccgaaaggga ggaaacctcg gttgattctc      3420
     tacgacgtac cgaggacgat ggagccaagc gaggtaggtg cggcccttct gcaaatgaac      3480
     gctgacgtgt tcgaaggaat cgaacgctcg gcgttcgaga aggactgcaa cttcctcttt      3540
     aaaacgggga aacgcgacgc ggacgtggtg cactgggtcc tcgagacttc gtcggaactt      3600
     agagacaggt tgcgcgaaaa ggagaggctc tacctcgggt ggaggaggtg taggatacag      3660
     gactacatct ccctcactcg ttgctataag tgccaaggcc ttggccatat aggaaaatac      3720
     tgtaaggcca aggaggagac atgcggacac tgtggtggcc aggggcacaa gaaagaatcg      3780
     tgccccaaaa aagatcagcc cgcgaagtgt gctctctgct tgcgcagaga caaacccagc      3840
     gaccacagtg tcatggaccc gaagtgtccc tcatttaagt cggcctatga cgtgtacacg      3900
     caaagtatcg actacggggg cccagtgcgg taataatggc ctcgacgatt aatgttctcc      3960
     agcataactt gggtagaggg aaaacatcga cggcggagtt gcgggatgcc gcggcggccg      4020
     tcagggcttc cgtgttgctt gtgcaggagc cccacgcgcg tgaggacatt ggggtgatag      4080
     gacttggctc tctgtcgaac aaggttctca cgggcgcgaa aacaggggaa cgtccttggg      4140
     cctgtgtagt aatcacggat cgctgcctgg acgtggtggt catcccgcat ctcagcagtc      4200
     ccttctgcgt gtgcgcgcat gtgtccacgg cggtgggcga cttccatgtc gtctcagcgt      4260
     actttccacc ttcgcaaccg ctggactcgc atttgcgcat gctggggcgc attcacgatg      4320
     gtctacgctc gtcaaaggtt atactcggta tagatgtcaa cgcgtggtca atgcggtggg      4380
     gctctaacac caccgaccgt agaggtcagg aggtagagga gttcctggcg acaaccggct      4440
     ggctggtcgt caatgagcct ggccaactgc cgacattctc aacggcaaac ggcgagagcc      4500
     acattgacgt cacgctagta ggagctggat tatcaaatct cattcgcgag tggaacgtca      4560
     gggagggttg gacgagcagc gaccatcgtg tgatacagat cacgttgggt tcaccagagc      4620
     ctagacaact tatccggata ccgcgctaca acattaaaag agcaaattgg gagggcttca      4680
     ggggaaatgt catctcacac ctcgataccc ttgaccaggc cgtcacttgt tcggaacacc      4740
     ttgaacgtgc ggccacctcg cttggtgaga tcttccacca agcgagcgcc acgaataaca      4800
     acattcctag gaagaggcac tttattaggt ctgtcccctg gtggaacagg gaactcacct      4860
     tctggaagag gagggtaaac agggcgcgca gggcatttca gggcgccagg cggtcttctg      4920
     gggcgccggc gttaaggagg atttacagcg tattaaaaag ggagtataac aagaaggtgt      4980
     atctggccaa gacggggagt tggagagagt tcgtaactct agacgggaac gaggacgcat      5040
     acggtgttgc gaataaaatc attagaaaac ggtttactcc ggacacggct ctctccagca      5100
     ttagcacgca tgggggagct actctggact ggcaagatac ggccgagaaa ctccttgacg      5160
     cccttatccc ggattgcccg ccgggtgacc gaatggactt gcgtgagctg tgcctctctt      5220
     tcccggaggg tgaggcggag gcgtgccccc actggactgc cggggaggtg acgagggtca      5280
     tcaagtccct acctaggagt aaggcacctg gtggcgacct gatcgaggcc gcaatgatta      5340
     aatccctagc gaactctcct gagttcattg aggctctggt gggcctatat aacaaatgtc      5400
     tggatattgg agtatttcct tgtacatgga agcgcggact tattcgggta ctcttaaagt      5460
     cagtcgagaa agacccggcg gatccgggtt cgtatcgccc catttgccta ttaccactgt      5520
     tcggaaaaat actcgagaag ctaataaagc tacggttgag tggggtgtta aatcacccag      5580
     aatatgcctc tgccaaccag tacgggttca gggctgggcg ctccacggag gacgcacttt      5640
     acgagttaag gaggaacgtg aattcctcca gtaaaaagta tgccctggca cttctttacg      5700
     atgccaaggc ggcttttgat catctctggt ggccagcgct tattcgcgag cttcaacaga      5760
     gaggctgccc gaataacctc ctgatgctaa tcggaagcta tttgtctggc cgggttgtag      5820
     aactcaccgg cagctataac tctctggaga agagtgtgac gaggggctgc ccccagggat      5880
     ctatattggg tccagatttc tggaatatcg tcttcgacac tttgttgaaa ctcctggagg      5940
     gcctgaacct gaatattaaa atcatcgcgt acgcggacga cctgctggtc ctggtagaat      6000
     ctgacagtcg gagaatgtta gaggttggcg ggcaggaggt cacagacacg gtgcaggatt      6060
     ggttcgtcag gaataaactg atcctctcag aaagcaaatc agaaatgatt ttgctaaagg      6120
     gagctctgcc gtcaagggac cctataatca agattaacaa tagagcacta gcgttggctg      6180
     agagtgtaaa gtatcttggc gtccatgttg gtgagagatt ctcgatcact aagcacctgc      6240
     tagcggcagg atccaagtgc cggttggtct tcgatctcct agcccgctct gccagggcga      6300
     actgggggct acggtttaga tcactcgaca taatgtacaa ggggatattt cttgcggtca      6360
     tgtgttacgg agcgggggcc tggggtgacc tcgtaaaaac gaatcagcac aggcagacgc      6420
     tccttaccat acaaagggcc atactcctcc gggtcaccaa ggcctatcgg actacctccg      6480
     gggacgcact atgtgtaata gctggggcga tccctctgga cttggtcata cgggagagaa      6540
     tgatcctgta catgatacgg aagaacttag aggcgggatt cggtaggtac tggttcctgc      6600
     cgggttcaag caaagtggaa gcaaagagag ggttgcgtga agcaattctt cgcgaatggc      6660
     agatgcgctg ggagacctcc agtaagggca gggaaacctt cgcttacttt ccggacgtcg      6720
     cgaaaagggt gggcagtgac tgggtaaaac ccggtcacta tatggcgcaa gccctaagtg      6780
     gacacgggga ctttaacgcg aaactgcatt cttttcggtt aaaagaatcc cccctttgcc      6840
     cgtgcgggat ggaggaaacc tcgtcgcatc tgctctttga ctgcgaactg tggaacgata      6900
     tccgatcgga gtttgtcgcg aagctggagg aggccggact cgaatggccc cctcaacgcc      6960
     aacgattgat ggacaaagat gtgtatcaga tctttgatgg ctatgttact gcggttctac      7020
     gggaaaaggc agcacgggcg gccgctgggc agacccaggc tgcaaacaac taaaggaatg      7080
     tcttatatag cctcagggag ggagggaggg cgcaagtcct ccagcccgac gggcctggcg      7140
     aacccggggc ccgagcaagt gtgagggtga tatggaggcc tagcgtcgac taagcccaat      7200
     cgcgaatggc agcttggatc tggttagcgg cgagtgagcc ggctcacgcg cgcaatatcc      7260
     gccgtaccat cctggcaacc gcgcgcgggc cgagaggtat ggaacgggac cggactaccg      7320
     tggtcatgtg taaggcgaaa ttgggactgg cgttataggc agaaggctac ttgcagtcac      7380
     cgaggctgtg gttttccggc ctccctgtat tattggaaca gggttatggg cctctgttga      7440
     cgactccgcc tccccgaggt ccccgctggt aacgccgttc cccttcgggt ccatcttctt      7500
     gggccccaag gggtgcggcg gcagaatgga gtcgcccccg gatggggggg ccctagctac      7560
     tctatgatcg ggcacagccc gtgagcgtgg cggtttttcc aagaacgatt ttccttgggg      7620
     gtgtttctcg catggatggt ggatgggtaa attctgattt gaagaccggt gatatagggc      7680
     tctgcccgag gtgcaccatg cccccgcccc attggcgtgg gtgtcctcac attaca          7736
//
ID   R1NS-1_CQ   repbase;    DNA;    INV; 5783 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An R1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1NS-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5783
RA   Kojima K.K. and Jurka J.;
RT   "Non-sequence-specific R1 non-LTR retrotransposons from the
RT   southern house mosquito.";
RL   Repbase Reports 11(1), 599-599 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity. It shows no sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           893..2506
FT                 /product="R1NS-1_CQ_1p"
FT                 /translation="MVNSKTNVHYTXEEVXRLNXXIRSAGNIRSDITRSGL
FT                 SLXVLARXAEELWKEXRSKYNALAEEASAEKAARLLLEXRVXALEVHNDSH
FT                 PSIEVEDQVTHSEFXXLREQNAALQATVEELSKTIAELAXAKPASXXAALD
FT                 SEVXALREQNXALXAEVAALRETAVTXPPXESQSGAXXXLSSELAKAQQEI
FT                 LXLREXLKGLKEEXAKXESEPKSGKSGKTGKNKGKNXGKNQQNQKPKQAKG
FT                 GAXNADPKPAVPXTPPGSKEXXTSPEGASQGGXPGDGSXXGNANDGFTVVN
FT                 RRKPRSKHKPRXRNEAIAIKADEXSYASLLRNMRSNDDFKXLGEATKSVRR
FT                 TRRNELLLILKKGAKPSSEYARLVAESVGSDEIKVRSLCPETTLQCKNLDE
FT                 TVTAEDLLDAITTQCLTGTLSAPVQLRKYNQGTQTATFKLPAKIAAMVLKV
FT                 GKIKVNWSVCPVSAIERPTVCFRCLEYGHKSWACKGPDRSKLCRRCGAEGH
FT                 QSKGCTAKAKCLICTGDGSNHATGSYTCPSFRSAFDKLRPCK"
FT   CDS           2491..5508
FT                 /product="R1NS-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="AETVQVIQLNLNHCXTAQQLLFQTVAEKKCDVALLSE
FT                 PYRIPEGNRNWLSDPPKAAAIWVTGQFPIQELVAAEEGFVIAKVNGVFYCS
FT                 CYAPPRWSIDRFDRMLDRLTDALTGKTPAVVAGDFNAWSTQWGSRESNRRG
FT                 QDLLEALARLNVDLANEGSASTFRRNGVSSIVDVTFCSPSLXASMDWKVDE
FT                 GYTHSDHQAVTFRICRVAXXPAQPAPRQXCRWKTSTLXKEVFVEALRRESA
FT                 TRDILELDCDGLMTILVGAXDAAMPRQXKPRNARTPVYWWNDDIAAIRAAS
FT                 LRARRKLQRARSDEQREARRVIYKIAKATLXKAIKESKRNCFGNLCQEANN
FT                 APWGNAYRIVMAKLKSGAVAIDRSPEMMSRIIDGLFPHHEVEPWPTTPYYH
FT                 EGLTXDEXSITNEELIKAASALKANKAPGPDGIPNQVLKLAIEENPDMFRS
FT                 ALQKCMDTGVFPDRWKRQRLVLLPKPGKPPGDPSAYRPICLIDTAGKLLER
FT                 VILNRLTIYLERGLSDRQFGFRKGRSTVDAIRAVLEKAKIAVEPKRRGMRF
FT                 CAVITLDVKNAFNSASWDAIARSLHRFRVPNYLCKLLKSYFENRVLLYETD
FT                 EGLRELIITAGVPQGSLIGPGLWNGMYDGVLTLXXPTGVSIVGFADDIVLM
FT                 VLGESQLQVEVRATEAIRTIEEWMGLHHLGLAHQKTEVVAVNNFKSAQCIN
FT                 VRAGNCXIXSKRSLLYLGIRVDDKLSFNSHVXYVCEKAMKAIASLSRMMGN
FT                 SSAVKSSKRRLLAXVVXSVLRYGAPAWGAALEAKTNLQKVTSVYRLXCLRV
FT                 CSAYRTASAEAACVLASMIPIGLLVREDMRCHELRGVGGHRASARTATMAX
FT                 WQRSWDDSTKGRWTHRVIPNLERWVNRTHGEINFYLTQVLSGHGCFRQYLH
FT                 RFGHATSPNCPNCTGTVETVEHVVFXCPRFQSSREILLLGCGXDTXPDNLT
FT                 DRMCXSEEAWGAASXAITQIMLKLQGKWRTDQRASRNEGPPPSSSVRYVTS
FT                 "
XX
SQ   Sequence 5783 BP; 1442 A; 1505 C; 1678 G; 1004 T; 154 other;
     ccgtggggac atgtgaaggg tccccgcggg agctgagctg aggctaccgg gcgggttgca        60
     gtcggcggat agctgtatgc tcttgcatgt ttacactgct gagcacccgg accaacagcg       120
     ggaagtcgat caggacgtgg tggaatccaa cttgggcaag tgttgttgtt gttttcctac       180
     aaaaagccac accagtccgt tacataaatc cttccgacaa agcgaatgaa tgccgcttta       240
     agcgttcaaa ggcccatact tcacaaaccc aaatccaaga tgtgcagcga tccgtgtcga       300
     gggattcatg gctaggaggg tttaaaacag cctagtcgct aacggtagcc tgtggggcaa       360
     cagggcgcac cccacagtat tgtagccctt accgcgctaa ggcagggcaa tggcgcggcg       420
     gacggtgtat ttccctagcg actcgtggga tgaaccagca atgttgaaaa attcaaataa       480
     aatcacaaac gakggttccg akgcacccga wgcatcggtt smagaagaaa gtccggtgga       540
     aaacgcggag tctgggggga ccwcctccca gcctgcctta gtagwaccgg ccgtcgcgat       600
     ggcgmaccgg cctgagacwk cagwmmakgg ccmgccgatc ggacctgtag ttcccgcgtw       660
     ccmkttcgcg aacaccgcgg gagtgcaacg atgaatccgc tgaggagtcc tmcaagmgaw       720
     mactckctgg ggagwmgatc swgggggwcc cmaagcgtgt kaggwsgggg scsawagagc       780
     gkatgataac tccgaaackg ccgcccatcs cgggasgaaa taggagagww cctcccaccg       840
     tagacagtga cgcaatacgc gaacgagcgc acgtgagcta agcgacctac tcatggtaaa       900
     cagcaagact aacgtccact acaccmtcga ggaagtcgma aggctaaacg akcwcatmmg       960
     aagcgccggc aacatccgga gcgacatcac magatcaggg ctgtcgctcw cggtgctggc      1020
     gcgtcawgcg gaggagctct ggaaggagmt gcgatcgaag tacaatgccc tcgctgagga      1080
     ggctagtgcg gagaaagckg cgaggttgtt gctggagsaa agggtgawgg ccctkgaggt      1140
     ccacaacgac tctcaccctt ccatcgaagt agaggaccag gtaacccata gcgaattcma      1200
     wkcgctacgg gagcagaatg cggcsctcca agcmacggtg gaggaactat ccaaaaccat      1260
     cgcggagctc gcakctgcta agcckgcmtc cgamcmagct gcgctcgaca gcgaagtgtm      1320
     cgcactccgc gagcagaacc wggcgctcas cgccgaggtw gcagccctga gagagacggc      1380
     cgtcacacma cctccgwgtg agtctcaatc aggggccsaa kcgmcccttt cktcagagct      1440
     tgcgaaggca cagcaggaaa tcctcwccct gcgcgaagam ctgaagggcc tsaaggagga      1500
     agmggccaag wgggagtcgg aaccgaagtc tggaaagtct ggcaagactg gaaagaacaa      1560
     gggcaagaac mawggtaaga accaacaaaa tcagaagcca aagcaggcga agggtggcgc      1620
     cmagaacgca gatcccaaac ctgcagttcc aawmacgccc ccaggtagca aggaggwtgk      1680
     caccagcccc gaaggggcgt cccaaggtgg cwmcccgggc gacgggagcg kcgawggaaa      1740
     cgctaatgac ggcttcacgg tkgtgaaccg aaggaaaccc aggtccaagc acaagccccg      1800
     kwcgaggaac gaggctatag cgatwaaggc cgacgagmaa agttacgcga gcctgttgcg      1860
     gaacatgcgc tcgaatgacg actttaagga sctgggggag gctaccaagt cggtgcggcg      1920
     aactcgccgg aacgagcttc tcctcatcct caaaaagggt gcgaagccca gttccgagta      1980
     cgcccgactg gttgccgaga gtgttggaag tgacgaaatc aaggtccggt cwctctgtcc      2040
     mgaaaccact ctccagtgta agaacctgga tgagacggtg acggcwgaag acctccttga      2100
     cgccataaca acacagtgcc ttacgggcac cctctcggca cccgtccaac tgaggaagta      2160
     caatcaaggc acgcagacgg ctacctttaa gttaccagcg aaaatcgcgg ccatggtgct      2220
     taaggtgggt aagatcaaag tcaactggtc agtatgtccg gtgtctgcga tcgaacggcc      2280
     aaccgtatgc ttcagatgcc ttgagtacgg ccacaagtcg tgggcctgca agggccccga      2340
     ccgcagtaag ctgtgcagac gatgcggagc cgaaggccat cagtcgaagg gctgtacagc      2400
     taaggcgaag tgtctaatat gcacggggga cgggagcaac catgctacgg gaagctatac      2460
     ctgtcctagc ttcagaagcg cgttcgataa gctgagaccg tgcaagtgat acagttgaac      2520
     ctcaatcact gcgamacggc gcagcagctg ctcttccaga cggtggccga gaagaagtgt      2580
     gacgtagcgc ttctatcgga accttatcgg attccggagg ggaacaggaa ttggttgagc      2640
     gacccaccca aggctgcggc aatctgggtg acgggtcagt tcccaataca ggagctagta      2700
     gcagcagagg agggcttcgt gatcgctaag gttaacggag tcttctactg cagctgctac      2760
     gctcccccga ggtggtctat agacaggttc gacagaatgc tggatagact gacggacgcg      2820
     ctcacaggca aaacccccgc agtggtggcc ggcgacttca acgcgtggtc cacacagtgg      2880
     ggtagccgcg agtcgaaccg cagaggccag gacctactcg aggcacttgc caggctaaac      2940
     gttgatctag ccaacgaggg atccgcgagc acgttccgta ggaacggagt ctcgtcgatc      3000
     gttgacgtta ctttctgtag tcccagcctt mtggcaagca tggactggaa agtggacgag      3060
     ggctacactc acagcgatca ccaagcggta acgtttmgga tctgccgtgt ggcccsmsgt      3120
     cctgcacaac cggcmccccg mcaagwgtgc cggtggaaga catcgaccct gamcaaggag      3180
     gtctttgtcg aagcgctaag aagagaaagt gccactcggg acattctaga actcgactgc      3240
     gacgggctaa tgaccatcct ggtgggcgcc wgtgatgcag caatgccgag gcaakcwaag      3300
     ccamgaaacg cgcggacccc agtttactgg tggaacgacg atatagckgc cattcgagcg      3360
     gccagcctga gggcccggag gaaactccaa cgagctcgct ccgacgagca gagggaagcc      3420
     aggcgggtga tctacaaaat cgccaaagct accctwwgca aggcaattaa ggagagcaag      3480
     aggaactgct tcggcaacct ctgccaggaa gccaacaatg caccatgggg taacgcctat      3540
     cggattgtta tggctaagct gaagagtggc gcggttgcca ttgatcgttc acctgaaatg      3600
     atgtcacgaa tcatcgacgg gttgttccct caccacgagg ttgagccctg gccaacgacc      3660
     ccctactacc atgaggggtt gacggwagat gaacmmagca tcacgaatga ggaacttatc      3720
     aaagccgcat cagccctcaa agcgaataag gcaccggggc ccgatgggat ccccaaccag      3780
     gtccttaaac tggcgatmga ggaaaacccg gacatgttca ggtcggctct ccagaagtgc      3840
     atggacacgg gggtctttcc ggaccggtgg aagcgacaaa ggctmgtcct gttgccgaag      3900
     ccggggaagc cacccggcga cccatccgcg tataggccca tttgtctcat agacaccgct      3960
     ggcaagttgc ttgagagagt tattctsaac agactaacga tctatttaga gaggggtctt      4020
     tcggaccgtc aatttggctt caggaaaggg aggtccacgg tcgacgcgat cagagcwgtc      4080
     ctcgagaaag ctaagattgc mgtcgaacca aagcgtcgag ggatgcgctt ctgcgccgtc      4140
     atcactctag atgtcaagaa tgctttcaat agcgctagtt gggacgccat tgcgagatcc      4200
     ctccatagat ttcgtgtccc caactacctg tgcaagttgc tcaaaagcta cttcgaaaac      4260
     cgagtccttc tctacgagac ggacgagggt cttcgcgaac tgatcatcac ggcgggggtc      4320
     ccacaaggct ccttgatcgg tcctgggttg tggaatggta tgtacgacgg ggtgctgact      4380
     ctasagttwc cgacgggcgt tagcatagtt ggctttgccg acgacatcgt cctgatggtg      4440
     ctcggtgagt cacagctcca agtcgaggta cgagcaaccg aagcaatacg gacaatcgaa      4500
     gaatggatgg gactgcacca tctagggctk gcgcatcaaa agacwgaggt agttgccgtg      4560
     aacaacttca agtctgcaca gtgcattaac gtcagggcag ggaactgcwc gatcgmctcc      4620
     aagaggtcat tgctctacct gggtatccgg gtggatgaca aattgagctt caacagtcat      4680
     gttgmctacg tmtgtgagaa agctatgaaa gcgatagcat ccctatctcg catgatgggg      4740
     aatagctckg ckgtcaagag tagtaaaagg cgtctgctgg cgasmgtggt cgsttccgtc      4800
     ctccgctacg gagcaccggc atggggcgcc gccctagaag caaagactaa cctmcagaag      4860
     gttacgagcg tctacaggct gmtttgcctt agggtatgca gcgcgtaccg caccgcatca      4920
     gcagaggcgg cctgcgtwct agctagcatg atcccaattg gactacttgt ccgagaagac      4980
     atgcgatgcc acgagctaag aggggtcggg gggcaccgtg cttcggccag gacagccact      5040
     atggctgwwt ggcaamgaag ctgggatgac tcgaccaaag ggcgatggac acatcgcgtg      5100
     atacccaacc tggagaggtg ggtaaacagg acgcatgggg aaataaattt ctacctgacc      5160
     caagtcctat cggggcacgg gtgcttcaga cagtacctac acagattcgg acacgcaacc      5220
     tcacccaact gcccgaactg tacgggcacc gttgaaacgg tggaacacgt ggtatttgam      5280
     tgcccmcggt tccagagtag cagagagatc ttgttgctgg gwtgtggtmc kgacacawcg      5340
     ccagacaacc tgacagacag aatgtgccwk agcgaggaag cgtggggtgc agcttccasa      5400
     gccataackc agattatgct caaattgcag gggaagtggc gcacggacca gcgtgcgtcc      5460
     cggaacgaag ggcccccgcc cagtagttcc gttcgatatg ttacaagttg agaagtatta      5520
     aactccaatt gatgaagaag gcacgcgcac gtacaaatgt acatacgagc gtgcctcccg      5580
     gacaaagggc tcgggcacaa ccgttccgaa acgagagcgc ttaattagcg ctgctcctcc      5640
     ccgacgtaat atcgaaagac agttccgggg aggcttgaag gcctaccgtg ataaagtggc      5700
     gttttttagt gagtcggact caactccaac ctcacacgat gtctgcagac agatttttcg      5760
     tcctactgaa acaaaaaaaa aaa                                              5783
//
ID   R1N_NLo     repbase;    DNA;    INV; 851 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Non-autonomous SINE-like non-LTR retrotransposon R1 in Nasonia
DE   longicornis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1N_NLo.
XX
OS   Nasonia longicornis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-851
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is less specific to 28S ribosomal RNA genes, compared
CC   to other R1 elements in Nasonia.
XX
SQ   Sequence 851 BP; 200 A; 181 C; 274 G; 196 T; 0 other;
     cggaagaccc ccgagagggt ggcaattctg ccagggcagt tgggtgaacc ctgagatttc        60
     ggtagcctcg gtatacctcc cacgaaagga agggggaagg ttcagtaatg ttccgagctg       120
     gaactagtct agtgattgaa ggaccatcag gttggtgaag atcaaaacta gtatacccag       180
     gcccttgtaa gctagtcggg ctctaactag ctgcttggga ctctagccct gggaacgctc       240
     cggcgtactg tatggttggc caatgccaaa aacgagtggg acgtttagaa cgtggtagca       300
     tgcttagtac gcttcggcgg aaacgtttgt gaactctcta ctggggagga taaaatcagt       360
     accacggggt cggggagccg caggatagtg aatcctgtcc cgacagggta aaggactcgt       420
     ggtggcagtg gttgcccgta tgctgggcag agagtttatc tttcgatgtg tgagttgcag       480
     tgcacaactc gggtattgac ctgcagagtc atgagggatt agatgggtcc cgccgcccat       540
     ccgagcggca ggttgacttc ccacttaagg tcacctggca tcggtaggcc gttgaatgta       600
     tacgcgtaca ttctttggtc gcgttggccg agcgtacctc ggcccgttgt cctacggcat       660
     accgaaagtc agtggaggct cgccggatat gttgcgaggt ggttaaagta gtgtggatga       720
     gaaaagtgtg tgtgtgtgca taaggccgag tggcgtatac tggcgtgtca aagctgatta       780
     gtaagtgtgc ctagagggcc atgtgggtga gccataaggc aggtactgca tgtaaaaaca       840
     aaaacaggaa c                                                            851
//
ID   R1_DEr      repbase;    DNA;    INV; 5381 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   erecta.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DEr.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5381
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           402..1754
FT                 /product="R1_DEr_1p"
FT                 /translation="LGKRRSHFHWVSPMESDSTASAMSASSASKKSTRRRR
FT                 KSVLASKSSVPTQAKLVAVAANGVPEPVGVLDEEFSSMDAPVAAVAPAAAP
FT                 AVAPAVAPTVAPAVARAVATATAATAAARAGQAAMMAELSATQRMVRSSFR
FT                 SLGGVNTDELTLAISRYDELVMALMLRCGELETRLAMPPPPTPSMTTAANP
FT                 PQMLQAAPIDAPRTAKVRETWSAVVKCDDPALSGKAIAEKVRNMVAPSLGV
FT                 RVHEVRELRRGDGAIIRTPSVGELQKVVSSKRFAEVGLNVTRNAAEKPKVV
FT                 VYDVDTAISPEEFMTELRENNFDDTMTASQFKKSVHLLTKAWSVTDGATVN
FT                 VTLEVDDGAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHKISECRQ
FT                 KDNVCRQCGQQGHNAARCQNPVDCRNCRHRGRPSGHHMLSSACPIYGAVLA
FT                 RVQARH"
FT   CDS           1751..4894
FT                 /product="R1_DEr_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAATIELGVRLRSSSSMFALVQE
FT                 PYLSSDGMDVLPQGMRIYTDRRGKAAILVDQQDAICMPVETLTTEYGVCLV
FT                 VKGSFGSIFLCSAYCQFDAPLEPYLRYMDAILLQASRTPAILGLDANAVSP
FT                 MWFAKLSRHAEGQANYSRGELLSEWMLEARAAALNQPTEVYTFDNYRARSD
FT                 IEVTIVNEAASMWATYEWRVDEWELSDQNIITVVAETTSTSAVESIAPVPS
FT                 WNLSNARWRLFEEEMVSRTAELPGSFSESPLDQQVSTLRSIVHDVCDIALG
FT                 RKSPRSPSRRARWWTADLSAARREVRRLRRRLQDARHRDDDVAAEPLVVEL
FT                 RRTSANYKRLIGRAKMDDWKRFVGDHADDPWGRVYKFCRGRRKCTEIGCLR
FT                 VNGELITDWGDCARVLLRNFFPVAESEAPTAIVEEDPPALETLEIDVCVGR
FT                 LKSRRSPGLDGINGTICKAVWRAVPQHLAALYSRCIRSGYFPSEWKCPRVV
FT                 ALLKGPEKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGF
FT                 RQGRCVEDAWRHVKSSVDASPAQYVLGTFVDFKGAFDNVEWSAVLRRLADL
FT                 GCREISLWQSFFAGRRAVIRSSSGAVNVPVTRGCPQGSISGPFIWDMLMDV
FT                 LLQRLEPYCLLSAYADDLLLLIEGNSRAVLEEKGAQLMSIVETWGAEIGVD
FT                 VSTSKTVIMQLKGALRRAPTVRFAGANLPYVRSYRYLGITVSEGMKFLTHI
FT                 ASLRQRMTGVVGALARVLRVDWGFSPRARRTIYAGLMAPCVLFGASVWYDT
FT                 AAQVAARRRLSSCHRLILLGCLSVCRTVSTAALQVLAGAPPLDLAAKKLAV
FT                 KYKLKRGYPLEENDWLYGEDIARLSREQKEIRLEECLLLSWQSRWDDDSEP
FT                 GWVTHRFIPDVTLVYRDPNFGFSMMASFLLTGHGTFNAFLHGRALSDTTAC
FT                 ACGDPYEDWVHVLCACPLYADLGGETSMDLECSALARTGHLKESWRIGREP
FT                 NGWLCSLSWCSAEEGAHSLTHRRVVSGREYCHSLPQLVVGGD"
XX
SQ   Sequence 5381 BP; 1191 A; 1337 C; 1673 G; 1180 T; 0 other;
     cggacgtgtt ttcctcgagc tcccattgct acggtcattg ttgagtaaat ccgcggattt        60
     atacgttgaa aaacggagta aagtgtgtgt gaaggtgtcg cgaacaaaag ttgaaaattt       120
     gtgagcgaaa gaacatcgcg tgttgtggaa ataaacgatt ttcaattgga aattttccac       180
     gagggccacg tgttgagtga gagcgctctc tgcgagagag gcgttagccc ttttcgtgtg       240
     ggattctctc agcgccagct gatcggttgt gaactttgct aaggtgtgtg cattggataa       300
     ttttagtgtt gccataccga gcaattggtg gcgccactgt gaataggtgg agccagtgtg       360
     ccatagcaac cagcctctgt cagcaagcta aagttgcttg acttggtaaa aggaggagcc       420
     acttccattg ggtaagtccg atggaaagcg atagcactgc gagcgccatg agcgccagca       480
     gtgcgtcgaa gaagtctacg cgtcgcaggc gtaaaagcgt actggcttca aagagctcgg       540
     tgccaacgca ggcgaagctg gttgccgtgg cggcgaatgg agttcctgaa cccgtaggcg       600
     tgttagacga ggagttttcg tcgatggatg cccccgtcgc tgctgttgcc cccgctgccg       660
     cccccgccgt tgcccccgct gtcgccccca ctgtcgcccc cgctgtcgcc cgcgctgttg       720
     ccaccgccac agctgccacc gctgccgctc gtgctgggca agcagccatg atggcagagc       780
     tgtcggccac tcagcgtatg gtgcgcagca gttttcgcag cctaggaggg gtgaacacgg       840
     acgagctcac cttggctatc agccgttacg acgagctggt tatggcgttg atgctcaggt       900
     gtggagagct ggagacgcgg ctggctatgc caccgccacc gaccccgtcg atgactacgg       960
     cggccaaccc tcctcagatg cttcaggcag cacccattga tgccccgcgg actgcaaagg      1020
     ttcgcgagac atggtcagcg gtcgtgaagt gcgacgaccc agcgctatcg gggaaggcga      1080
     tagctgagaa ggtgcgaaat atggttgcac cctccctcgg agtcagggtt cacgaggtgc      1140
     gtgaactccg gagaggcgat ggagcaatta tccgcacacc ctcagtcgga gagctgcaga      1200
     aggtggtgtc atcgaagaga ttcgccgaag tgggactaaa tgttacgagg aatgctgctg      1260
     agaagccgaa ggtagtcgtt tacgacgtgg acacggccat cagcccggag gaattcatga      1320
     cggaactgcg ggaaaacaac ttcgatgaca cgatgacggc atcgcaattt aagaagtcgg      1380
     tgcacctgtt gactaaggcg tggtcggtga ctgacggcgc cactgtcaat gtgacgctgg      1440
     aagtcgatga tggagcgatg gcgaagcttg atgtgggtcg ggtgtacatc aagtggttct      1500
     cgttccgatg ccgatcgcag gtccgcacct atgcctgtca cagatgcgtg ggcttcgacc      1560
     acaagatcag cgagtgccgt cagaaggaca acgtctgccg ccagtgcggg cagcagggcc      1620
     acaacgcggc aaggtgccag aacccggtgg actgccgaaa ttgccggcat agagggcgac      1680
     cctcgggaca tcatatgctc tcgagcgctt gcccaatata tggcgcggtg ctagcgaggg      1740
     tgcaagctag acattaatgt ttagcttcat ccaagcgaac tgtggccgag ggcgagctgc      1800
     gaccatagag cttggtgtcc gactcaggag ttcaagctca atgttcgcac tggtgcagga      1860
     gccgtacctc agcagcgacg ggatggatgt gctgcctcaa ggaatgagga tttacactga      1920
     ccggcgaggg aaggcagcca tcctagtaga tcagcaggat gccatctgta tgccagtgga      1980
     gaccctcacc acagagtatg gcgtatgtct ggtagtaaaa gggagttttg gctcaatctt      2040
     cctttgttca gcatactgcc aattcgatgc acctttggaa ccgtaccttc ggtacatgga      2100
     tgcgatcctg ctacaggcta gcagaacccc cgcaatcctg ggcctcgacg cgaatgcagt      2160
     gtcccccatg tggtttgcca aactctctcg gcatgccgag gggcaagcta actacagtcg      2220
     gggtgagctg ctgtctgagt ggatgctgga ggcaagagcc gccgccctaa accagccaac      2280
     agaggtgtac acgttcgata actacagagc tcgtagtgat atcgaagtga caatcgtcaa      2340
     cgaggcagca tctatgtggg ccacatatga gtggagagtg gacgagtggg agttgagtga      2400
     ccagaacatc attactgttg tggccgaaac aacctccacg agcgcagttg agagcatagc      2460
     tcctgtgccg tcctggaacc tctccaatgc acgttggcga ttgttcgagg aggagatggt      2520
     gagtagaaca gccgaacttc cgggaagctt ctctgagtcg ccgttggacc agcaggtttc      2580
     caccctgcgc agtatagtgc atgatgtgtg cgatattgcg ttgggtagaa aatcgcctag      2640
     atcgcccagc aggagagcac gttggtggac tgccgacctg agcgctgcga ggcgcgaagt      2700
     tcggagactt cgtcgccgac tccaggatgc acggcatcgt gatgacgatg ttgctgcaga      2760
     gcctttagta gtcgagctga gacggacctc agccaactac aaaaggctca ttgggagggc      2820
     gaaaatggac gattggaaac gcttcgtggg agatcatgcc gatgatccat gggggcgcgt      2880
     ctacaaattt tgccgaggtc gaagaaagtg cacggagatt gggtgcctcc gcgtgaatgg      2940
     cgagctgatc actgattggg gtgattgtgc acgagtgctc cttcgcaact ttttcccagt      3000
     tgcggagtcc gaagcaccga ctgccatcgt ggaggaagac ccaccggccc ttgaaacact      3060
     cgagattgat gtctgtgttg gccgactgaa gagcaggcgt tcgcctggct tggacggcat      3120
     caatggcact atttgtaagg cagtctggcg cgccgtacct cagcacctgg cagcgttgta      3180
     ctcccgttgc atccgatcgg gatactttcc cagcgagtgg aagtgcccac gagtagtggc      3240
     gctactcaag ggacccgaga aggacaagtg tgagccctcc tcatataggg gaatttgctt      3300
     actgccagtt tttggcaagg tgcttgaggc aatcatggtg aatcgtgtaa gagaagttct      3360
     tccggaaggc tgcagatggc agttcggttt tcgccaagga cgttgtgtgg aggatgcttg      3420
     gagacacgtg aagagcagtg ttgacgccag tccagcgcaa tacgtgctcg gcacattcgt      3480
     ggacttcaaa ggagcatttg acaacgtcga atggagtgct gtactgcgcc gactagccga      3540
     cttgggatgc cgggaaataa gcttgtggca gagctttttt gccggccgaa gagcagtaat      3600
     ccgaagcagt tccggtgcag tgaatgtgcc ggtaactaga ggttgcccgc aggggtcaat      3660
     cagcggccca tttatttggg acatgctgat ggatgtactg cttcagcgcc tcgagccgta      3720
     ttgcctgcta agtgcatacg cggatgacct gcttcttctc atcgagggaa attcccgagc      3780
     cgtgctagag gaaaaaggag cgcaactgat gtccatcgtt gaaacgtggg gagcggaaat      3840
     aggcgttgac gtttcgacca gcaagacggt aataatgcag ctcaaaggtg ccttgagacg      3900
     tgcgcccacg gtaagattcg ctggagcgaa cctgccgtat gtgcgtagct atcggtacct      3960
     tggcatcacg gtcagtgaag gaatgaaatt cctcacgcat atagcttcgc ttcgccagcg      4020
     gatgaccgga gtcgttggag cattggcgcg tgtgctacga gtcgactggg gcttcagtcc      4080
     tcgagccagg cggaccatat atgcgggact catggcacct tgtgtgctgt ttggtgcctc      4140
     ggtatggtat gacaccgccg cacaggtagc tgccaggagg cgactgtcct cctgccatag      4200
     actgatcctg cttggatgtc tatcggtatg ccgaacagtg tccaccgcgg cactgcaggt      4260
     tcttgctgga gcccccccgc ttgacttggc cgctaagaaa ttagcggtca aatacaagct      4320
     gaagcgtgga tacccgctgg aggagaacga ctggctctat ggcgaggaca ttgcgcgtct      4380
     aagccgtgag caaaaagaga ttcgcctaga ggaatgcttg ctattaagtt ggcaaagcag      4440
     atgggatgac gacagcgaac caggatgggt gacgcacagg ttcatcccgg acgtcaccct      4500
     tgtctatcgg gatccaaatt ttggtttctc gatgatggcg tctttcttgc tcactgggca      4560
     cgggacgttc aacgcatttc tgcatgggag agccctcagc gatactactg cttgcgcatg      4620
     tggtgatcca tacgaggatt gggtgcacgt gttgtgcgcc tgccccctat atgcagattt      4680
     agggggggag acctcgatgg acttggagtg cagcgcgttg gcgaggactg gacatttgaa      4740
     agaatcctgg aggatcggga gagaacccaa cggctggctg tgttcgctga gttggtgttc      4800
     cgcagaagaa ggggcacata gcctgacgca tcgccgtgtg gttagcgggc gagaatactg      4860
     ccacagcttg ccgcagcttg tcgtaggagg cgactaatgc ggcaataggt cactccgccc      4920
     gtgcttgtcg gagccaaaga gtgaggccga ccgagcctct aattttcggt accacgggtt      4980
     gagcagttcc aagactgctc attgaggttg gcccccttgt gggagtatcg tggtggctgt      5040
     ggttggtacc catatcgcgg gtagagcctt catgctcgac gtttgagtaa cggcgcgggt      5100
     tgcgcaacac tcgggtgctg tgacccatag aacagtagag attttaggta gatctcgctc      5160
     ctcagcaagg gggagtgctt gcccggcaag caagcactcg aattgctacc ggggtggtcg      5220
     ctatgtacat agctatagct tccagaccgg gacgttttgt tcagcgtatt ggacacatgc      5280
     atcatatgct cacttgtggg tgtatagggt gccgtggttg taatcccttc aatgtggaac      5340
     acgccacgta aaacaagttc ggagggatcc gattcataca c                          5381
//
ID   R1_DM       repbase;    DNA;    INV; 5356 BP.
XX
AC   X51968;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   08-NOV-2010 (Rel. 2.02, Last updated, Version 3)
XX
DE   Drosophila melanogaster DNA for type I retrotransposable element
DE   R1Dm.
XX
KW   Non-LTR Retrotransposon; Transposable Element; transposon;
KW   reverse transcriptase; integrase; retrotransposon; DMR1; R1_DM.
XX
NM   R1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5356
RA   Eickbush H.T.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (20-FEB-1990). Eickbush
RL   T.H., University of Rochester, Dept of Biology, Rochester NY
RL   14627, U S A.
XX
RN   [2]
RP   1-5356
RA   Jakubczak L.J., Xiong Y. and Eickbush H.T.;
RT   "Type I (R1) and type II (R2) ribosomal DNA insertions of
RT   Drosophila melanogaster are retrotransposable elements closely
RT   related to those of Bombyx mori.";
RL   J. Mol. Biol 212(1), 37-52 (1990).
XX
DR   GenBank; X51968; Positions       1    5356.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..1731
FT                 /product="R1_DM_1p"
FT                 /translation="PVSASIRLLDSSKGGATIGATPMESDSSVSALSGSSA
FT                 SKVSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEAFSSLEDAR
FT                 AATSNAANDAAPPAAAPAVDHTVAPDVSTAAKIAATTATAATAAARAGQAA
FT                 MMAELSATQRMVRNSFRSLGGVDTEELSCAISRYDELVMALMLRCGELETR
FT                 LAMPPPPPPPSKANTTAANAPQMPQVAPIAAPRTTKVRETWSAVVKCDDPA
FT                 LSGKAIAEKVRTMVAPSLGVRVHEVRELPSRWWCDHSYSSVGELQKVMASK
FT                 RFAELGLNVARNAAEKPKVIVYDVDTAIGPEEFMQELHENNFDSEMTLAQF
FT                 KKSVHLVTKAWSATDGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQV
FT                 RTYACHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVDCRNCRHRG
FT                 QPSGHYMLSNACPIYGALLARVQARH"
FT   CDS           1728..4790
FT                 /product="R1_DM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQE
FT                 PYLGGDEMDVLPEGMRVFTDRRGKAAILVDHQEAICMPVETLTTDYGVCLV
FT                 VKGSFGSIFLCAAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSP
FT                 MWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNHRATSD
FT                 IDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARSVESIAPVPS
FT                 WNFSNARWRLFKEEMVSRIAELPENFSESPLDQQVSTLRSIVHSVCDTALG
FT                 RKLTRSPSRRARWWTADLCAARREVRRLRRLLQDGRRRDDDAAVELVVVEL
FT                 RRASAYYKKLIGRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLR
FT                 VNGELITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDTCVAR
FT                 LKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVV
FT                 SLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGF
FT                 RQGRCVEDAWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADL
FT                 GCREMGLWQSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDV
FT                 LLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDC
FT                 LSTSKTVIMLLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHI
FT                 ASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT
FT                 AEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAI
FT                 KYKLKRGFPLEENDWLYGEDIACLSWEQRKTRLEECLIQSWQNRWDDDSEP
FT                 GRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLHGRALSDTTAC
FT                 ACGDPYEDWMHILCACPLYADLRDLDGLGVQRLGENWIFEGILDDQEKTQR
FT                 LAMFAEEVFLRRRAL"
XX
SQ   Sequence 5356 BP; 1213 A; 1340 C; 1634 G; 1169 T; 0 other;
     cggacgtgtt ttcgttgcgc tcgtggacat agtgcgaaga actttgtttt ccgtatttgg        60
     aagtatacgg aataaataat ttagtgttcc gtggaagtgg tgcgcaaatt ttcgcgaatt       120
     aaaaacaagc ggtttggaag taattgacaa taaattattg gaaattttcc actccgcacg       180
     tgttgagcgg cggagcttgc gggtgagctt ttcgaacagc tgagagaagc ttattggtgg       240
     tagtcaccgc taaggattgt gtcttgggac agcttagtgc actctaccaa taggtggagc       300
     tatcaccata gcaactagcc cgtgtcagcg agcatacgat tgctggactc gtcaaaagga       360
     ggagccacca tcggagcaac gccgatggag agcgacagca gtgtgagtgc cttgagcgga       420
     agcagtgcct caaaggtgtc aagacgaggc aggcgtagga gccatctggc ctccaagagc       480
     tcggcgccaa cgcaggcgaa actggttgcc ctggcctcga atggagtgcc ggaacccgtt       540
     ggtgtgctgg aggaggcgtt ttcgtcgctg gaggatgccc gggcggctac gtcaaacgct       600
     gccaacgatg ctgccccccc cgctgctgcc cccgctgttg atcacactgt tgcccctgat       660
     gtttccactg ctgctaaaat cgctgccacc actgccaccg ctgccaccgc tgccgcccgt       720
     gctgggcaag cagccatgat ggcagagctg tcggccaccc agcgcatggt gcgaaacagt       780
     ttccgcagcc taggaggcgt agacacggaa gagctctcgt gtgccatcag ccgctatgat       840
     gagctggtga tggcattaat gctccggtgt ggagaactgg agacgcggct cgctatgcca       900
     ccaccgccgc cgccgccgtc caaggcgaac actactgccg ccaatgctcc ccagatgcct       960
     caggttgcac ccatcgctgc cccgcggaca accaaggttc gtgagacgtg gtcagcggtg      1020
     gtgaagtgcg acgaccctgc gctatcgggg aaagccatag ccgaaaaggt gcggacgatg      1080
     gttgcaccct ccctcggagt cagagtacac gaggtacgtg agctgccgtc gaggtggtgg      1140
     tgcgatcatt cgtactcttc ggttggagag ctgcagaagg tgatggcatc gaaaagattc      1200
     gcagaacttg gactgaatgt ggcacggaac gcggccgaga agccgaaggt catagtctat      1260
     gacgtcgaca cagccatcgg cccagaagag ttcatgcagg agcttcacga gaacaacttc      1320
     gacagtgaaa tgactctggc ccagttcaaa aagtcggtgc acctggtgac caaggcgtgg      1380
     tcggctactg acggtgccac cgtaaacgtg acgctagagg tagacgaccg ggcgatggcg      1440
     aaacttgatg taggacgtgt ctacattaag tggttttcgt tccgatgccg atcgcaagtc      1500
     cgcacctatg cctgccacag atgtgtgggt ttcgaccaca aggttagtga atgcaggcag      1560
     aaggagagtg tttgccgcca gtgcgggcaa caaggccaca ccgcggcaaa gtgccaaaac      1620
     ccggtggact gccggaactg ccgtcacaga gggcaacctt cggggcatta tatgctctcg      1680
     aatgcttgcc cgatatacgg agcgttgtta gcgagggtgc aagctagaca ctaatgttta      1740
     gcttcatcca agcgaactgt ggccgaggca gagctgcgac catcgagctc ggagtccgac      1800
     tcaggagatc ggagtcaatg tttgctctgg tgcaggagcc gtatcttggc ggggatgaaa      1860
     tggatgtgct gcctgaagga atgagggttt tcaccgaccg gcgagggaag gcagccatcc      1920
     tagtggatca tcaggaagcc atctgcatgc cagtggaaac tctcaccaca gattatggcg      1980
     tatgtctggt cgttaaaggg agttttggct caatcttcct ttgcgccgca tactgccagt      2040
     tcgatgcacc tctggaaccg tacctccggt acatggatgc ggtcctgctg caggccagca      2100
     gaacccccgc aatcctgggc ctcgacgcga atgcagtgtc ccccatgtgg cttagcaaac      2160
     tctctcgtca tgccgagggg caagctaact acagacgggg tgagctgctg tctgagtgga      2220
     tgctggaggc aagagtcgcc gccctaaacc agtcaacaga ggtgtacacg ttcgataatc      2280
     acagagcgac tagtgatatc gacgtgacaa tcgtcaatga agcagcatct atgtgggcca      2340
     catatgagtg gagagtggac gagtgggaat tgagtgacca caacatcatt actgttgtgg      2400
     ccgaaccaac taccgcgcgc tcagttgaga gcatagctcc tgtgccgtcc tggaacttct      2460
     ccaatgcacg ttggcgattg ttcaaggagg aaatggtgag tagaatagcc gaacttccgg      2520
     aaaacttttc agagtcgccg ttggaccagc aagtttcgac cctgcgcagt atagtacata      2580
     gtgtatgtga tactgcgcta ggaaggaagt tgactcgatc gcccagcagg agagcacgtt      2640
     ggtggactgc cgacctctgc gctgcaaggc gcgaagtccg aagacttcgt cgcctgctcc      2700
     aagatggaag gcgtcgagat gacgatgccg ctgtagagct tgtagtggtc gagctgaggc      2760
     gtgcctcagc ctactacaag aagctcattg gaagggcgaa gatggatgac tggaaacgct      2820
     tcgtgggaga tcatgccgac gacccatggg ggcgcgtcta caagatttgc cgaggtcgca      2880
     ggaagtgcac ggagattggg tgcctccgcg tgaatggcga gctgatcact gattggggtg      2940
     actgcgcacg agtgctcctc cgcaattttt tcccagttgc ggagtccgaa gcaccgactg      3000
     ccatcgcgga ggaagtccca ccggccctcg aagtattcga ggttgataca tgtgttgccc      3060
     ggctgaagag caggcgctct cccgggttgg acggcatcaa tggcactatc tgcaaggcag      3120
     tctggcgcgc catacccgag cacctagcat cattgttttc ccgatgcatc cgattgggat      3180
     actttccagc cgagtggaag tgcccacgag ttgtctcgtt gctcaaaggg ccagataagg      3240
     acaagtgtga gccctcctca tacagaggaa tatgcttgct accagtcttt ggaaaggtgc      3300
     tcgaggccat catggtgaat cgtgtgagag aagttcttcc ggaaggctgc agatggcaat      3360
     tcggatttcg ccaaggacga tgtgtggagg atgcttggag gcacgtgaag agcagtgttg      3420
     gcgccagcgc ggcgcaatac gtgctcggca cattcgtgga cttcaaagga gcattcgaca      3480
     acgtcgaatg gagtgctgca ctcagccgac tagccgactt gggatgccgg gaaatgggct      3540
     tgtggcagag ctttttctcc ggccgaagag cagtgatccg aagcagttcc ggtactgtgg      3600
     aggtaccggt aactagaggc tgcccgcagg gatcaatcag cggcccattt atctgggaca      3660
     tactgatgga tgtactgctt cagcgtctcc agccgtattg ccagctgagt gcatacgcgg      3720
     atgacttgct gcttctcgtc gagggaaatt cccgagctgt gctagaggaa aaaggagcgc      3780
     aactaatgtc catcgtagaa acgtggggag cggaagttgg cgattgcctc tcgaccagca      3840
     agacggtaat catgctgctg aaaggtgcct tgagacgtgc gcctacggtg aggtttgctg      3900
     gacggaacct tccgtatgtg cgtagctgtc ggtaccttgg catcacggtc agtgaaggaa      3960
     tgaaattcct cacgcacata gcttcgcttc gccagcggat gacaggagtc gttggagcat      4020
     tggcgcgtgt gcttcgagcc gactggggct tcagtcctcg agccaggcgg accatatatg      4080
     acggactcat ggcaccttgt gtgctgtttg gtgccccggt atggtatgac accgcggaac      4140
     aagtagctgc ccagaggcga ctagcctcct gccagaggct aatcctgctt ggatgccttt      4200
     cggtatgccg aacagtatcc acagtggcac tgcaggtact tggtggagct cccccgcttg      4260
     atctggctgc taagttatta gcgatcaaat acaagctaaa acgtggattc ccgctggagg      4320
     agaacgactg gctttacggc gaggacattg cgtgtcttag ctgggagcag aggaagactc      4380
     gcctagagga gtgtttaatc cagagttggc agaacagatg ggacgatgac agcgaaccag      4440
     gacgggtgac gcataggttt atcccatacg tcactcttgc ctatcgggat ccaagttttg      4500
     gattctcgat gaggacgtct ttcctgctta cagggcacgg gtcgttcaat gcatttttgc      4560
     acgggagagc cctcagcgat accactgctt gcgcatgtgg agatccatat gaggactgga      4620
     tgcatatctt gtgcgcttgc cccctatatg cagatctgcg ggacctagat ggacttggag      4680
     tgcagcgcct tggcgaaaac tggatcttcg agggaatcct ggatgatcaa gagaagactc      4740
     aacggctggc aatgtttgcg gaagaagtgt tcctgaggag gagggccctt tagctcaaca      4800
     tctctgccgt gtggttagcg ggcgagaata ctaccacagt ccgctgttgc ttgtcgtaag      4860
     agacgactaa tacagcgata ggattcctct aaccctgctt gtcggagcaa aagggggagg      4920
     cccaccgagc ctcttttcgg taccacgggt tgagcagcta tccaagactg ctcattgagg      4980
     taggccccct ggtgggagta tcgtggtggc tgtggttggt acccatatcg cgggtagagc      5040
     cttcatgctc gacgtttgag ttacggtgct agttgcgcaa aactcgggtg ctgtgaccca      5100
     gagatcagta gagattttag gtagatctcg ctcctcagca agggggagtg cttgcccggc      5160
     aagcaagtac tcgaattgct accggggtgg tcgctatgta catagctata gcttctagtc      5220
     cgggacgctt gtctggcgta tccagacaca tgcaccatat gctcacttgt gggcgtatag      5280
     ggtgccgtgg ttgtaatccc ttcagtgtgg aacacgccac gtaaaataag ttcggaggga      5340
     tccgaaaagc atacat                                                      5356
//
ID   R1_DMo      repbase;    DNA;    INV; 5931 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 17.07, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   mojavensis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DMo.
XX
NM   R1_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5931
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           319..1836
FT                 /product="R1_DMo_1p"
FT                 /translation="RPGMDSEASSGSSTMSKKKKRGRGAKSHLRHAGDAAA
FT                 MPPPTDSPPRKLRVHVDSSADESDASLVATAATVASAASAAPTAAPAANAA
FT                 ANTAAPAAIPAMEAILAAAAAAAAPAAAAAPAAAAPAAAATHAARNPAPLE
FT                 APSTSAAAAAASAHSVSSVPAGAGTASSNSMVQRMLAIERELRRAVVADNV
FT                 PGAVALSVLDNAAKFQELILEMYGRMKELETIVRTRPQATAPQTSAAPAAS
FT                 YAAVTATAVAAPVALPRARKIAETWSAIVTSNNPEETPQQVAERVRKEVAP
FT                 ALGVRVHEVRELKRGGAVIRTPSAGEIRRVLANPKFKEVGLDVKENAAPRP
FT                 RINVINVDSSISPNKFMEGLYKNHFFGHCSNAAFEKAVKIASKPWSSEDGP
FT                 TVNIILEMERKALDILEDSERIYVEWFSFRWHPLTPTYACFRCFSFDHKVA
FT                 MCRMKEQTCKRCGQSGHRVSGCRNPVHCRNCSFKGLPAGHHMLSETCPIYG
FT                 RVLARVAAKH"
FT   CDS           1833..4943
FT                 /product="R1_DMo_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLTMFSIIQANCGRSRAAVVDLGVRMRNSGAMFALLQ
FT                 EPYVDRGGRITGLPAGMRVFSDRRNKATIVVDDQEVVCMPVSSLITEFGVC
FT                 VSVSGNFGSIFLTSVYCQFNAELEPYLLYMDAVLLLASRTPVIYGLDANAV
FT                 SPLWFSKLPERSRGYLNRQRGELLADWVQGSRAGVLNVRSRVYTFDNRRAR
FT                 SDIDVTIVSDSASTWAAYDWSVSEWDLSDHNIITVVVTLDPESTVESFAPV
FT                 PSWQLQNADWRRFGDELRTASMDIPLEDFRLLSSDAQVTALRSLVHQVSDT
FT                 LFGRRQPRARRRVGWWNAALTDARRTLRRARRRLQHARRTQSESASALASY
FT                 FRITRKEYERMMLKAKEEDWRRYVGEHQDDPWGSVYKICHGRKTRTDFGCL
FT                 RWNNEQYVTWHDCANVLLRNFFPAAERPVDIVVPREVPPALETFEVEMCIA
FT                 RVRSRRSPGLDGITGGMVKAAWRAIPEHMTALYSRCLADGYFPLEWKRPRV
FT                 VALLKGLDKDRSDPASYRGICLLPVFGKVLEGIMVNRVKEMLTDESRWQFG
FT                 FRPGRCVEDAWRHVLSSVEASSARYVLGVFIDFKGAFDHVEWDAALRRLSD
FT                 LGCREIGIWRSFFSDRKASIVSSFGEANVNVSRGCPQGSISGPFIWNILMD
FT                 VLLRRLEAHCTFSAYADDLLLLVEGNSRSQLELTGAQLMEIVGGWGIEVGV
FT                 SVSATKTVTMLLKGKLSAGRNPAVRFAGANLRYVTQYRYLGITAGERLSFL
FT                 PHIASLRDRLAGVVGALTRVLRVDWGLSPRARRRIYAGLMVPCALFGASVW
FT                 YTVVMRLVGARRSLKSCHRIILIGCLPTCRTVSTDALEVLAGAPPLDLVAT
FT                 RNAMQFKLKRSYPMVEGDWLYDQDVSTLDRTMRRALLDERLLREWQIRWDD
FT                 SEHGRVTHRFIPDVSFVYSRPDFSFTMPTSFLITGHGSLNAFLHARGLSET
FT                 AGCLCGHPLEDWLHVLCACPLYADVRDLQGLRIQQSESGDWTMERTLMEAE
FT                 SMQLLEDYARTVFSRRRMLMDGMGPGRPVPD"
XX
SQ   Sequence 5931 BP; 1263 A; 1551 C; 1772 G; 1345 T; 0 other;
     cagtttgctt ttgattgtcg ccgtgaacgg acgtgttcag tttcgtcgcg catcattgtg        60
     taaatttgag ttttattgcc ggcaataaaa tacgttgaac gcgcgttaaa attgcttatt       120
     tcgagcatct cgcgataagc aatctctcgc cgcgtttgta ttagtgcgtg tgtgagcgtt       180
     ttaccgctac gtgttgctga ttggctagcc aatcagaagc gacgaactgt tgcgcttcaa       240
     cagaaagtgt tgcatacttt cgggaacaat ttaaaatcac tgcatacttt gtggtatcag       300
     tgattttgtg ttgcctagcg tccagggatg gactctgagg cgagtagcgg gagttcgacc       360
     atgtcgaaga agaagaagcg tggccgcgga gcgaagagcc atcttcgtca cgcgggcgac       420
     gccgcagcca tgccgccgcc aacggactcg ccgccgcgaa agttgcgagt ccacgtggac       480
     agctctgcgg atgagagcga tgcgtcgctg gttgccactg cagccaccgt tgcctctgct       540
     gcttctgctg cccccaccgc cgcccccgct gccaacgccg ctgccaacac tgctgccccc       600
     gctgccatcc ctgccatgga ggctatttta gctgctgccg cagctgctgc tgcccccgcc       660
     gctgctgccg cccccgccgc tgctgccccc gccgctgctg ctacccatgc tgcccggaat       720
     ccggccccac ttgaggcgcc gtcgacgtcc gctgccgctg ctgctgctag cgcccactct       780
     gtgagctcgg tgccggctgg agctggtacc gcgagctcaa actcgatggt acaacgtatg       840
     ttggccatcg aaagagagct ccggagagcc gttgttgccg acaacgtgcc tggcgctgtt       900
     gcgctcagcg tgctggacaa cgctgccaag ttccaggagt taatcctgga gatgtatggt       960
     aggatgaagg agctggagac cattgtcagg actcgccctc aggccactgc tccccaaaca      1020
     agtgctgccc cagccgcttc ctacgccgct gttactgcaa ctgcagtcgc tgctccggtc      1080
     gctcttcctc gggcccgcaa aattgcggaa acgtggtcag cgatcgtgac gtccaacaac      1140
     ccggaggaga cgccccagca agtcgctgag cgtgtccgaa aggaggttgc gcccgctctc      1200
     ggtgttcgtg ttcacgaggt gcgtgagctg aagcgtggcg gtgcggtcat tcgcacgcca      1260
     tctgctggtg agatacggag ggttcttgcg aacccgaagt tcaaggaagt cggtctcgat      1320
     gtcaaagaga atgcagcacc caggcccagg attaacgtga tcaacgtgga cagcagcatc      1380
     tcgccgaaca aatttatgga agggctatac aagaatcact tcttcggaca ctgctccaat      1440
     gcagcgttcg agaaggcggt caagatagcc tcgaagccct ggagcagtga agatggaccc      1500
     acggtcaaca tcatcctgga aatggaacgc aaggcgctgg acatcttgga ggattcggag      1560
     agaatctacg tggagtggtt ctctttccga tggcatccac tgaccccgac atatgcctgc      1620
     tttagatgtt tcagctttga ccataaagta gccatgtgtc ggatgaagga gcaaacttgt      1680
     aagcgatgcg gacaatcggg gcatcgtgtc tcgggttgca ggaatcctgt gcattgcagg      1740
     aactgtagct ttaagggttt acccgcgggg catcatatgc tctcagagac ctgcccgatt      1800
     tacggacgtg tgctcgccag ggtggctgct aaacattaac aatgtttagc atcattcagg      1860
     ctaactgcgg tcgcagcaga gctgccgttg tcgacctagg ggtccggatg aggaactctg      1920
     gggcgatgtt cgcattgctg caagaaccat atgttgaccg tggaggaagg atcaccggat      1980
     tgccggcagg catgcgagtt ttctccgacc gtcgcaacaa agctacaatt gtcgtagacg      2040
     accaggaggt cgtctgcatg cctgtctcgt cactcatcac ggagtttggc gtatgcgtga      2100
     gtgtgtcggg taacttcggc tcgattttcc tcacctccgt atactgccaa tttaacgcag      2160
     aactggagcc gtacctgctg tacatggatg cggtgctgct gctagccagc cgcacgcctg      2220
     tcatctatgg ccttgacgcg aacgcagtat cccccctgtg gttcagtaag ctgcccgagc      2280
     gctctcgggg ctacttgaac aggcagcggg gtgaactgct agctgactgg gttcagggca      2340
     gtcgagccgg cgtgctgaat gtccgcagca gagtgtacac gttcgataat cgcagggcga      2400
     ggagcgatat tgacgtgact atcgtcagtg attcagcgtc tacgtgggcc gcgtatgact      2460
     ggagtgtaag cgagtgggat ttaagcgacc acaacatcat cactgttgtg gtgacgcttg      2520
     atccggaaag cacagttgag agctttgctc ctgtgccctc gtggcaactc cagaatgctg      2580
     actggcggcg ttttggtgat gagttgagga ctgcatcgat ggatatcccc cttgaggatt      2640
     ttcgcctttt gtcatcggat gcacaggtga ccgcactccg ctccctggtt catcaggtga      2700
     gcgacacttt gtttgggcgt cgacaaccgc gagctagacg ccgtgtgggc tggtggaatg      2760
     ccgccctcac ggacgcacgc cgtacgctca ggagagcacg gcgaaggctc cagcatgcgc      2820
     gccgcacgca aagtgagagt gccagtgccc ttgcctcgta tttcaggatc acccgaaagg      2880
     aatacgagag gatgatgctc aaggcgaaag aggaggattg gaggagatat gtcggcgagc      2940
     atcaggatga cccatgggga tctgtttaca agatctgcca cggccgcaag acgcgcaccg      3000
     atttcggttg ccttcgctgg aacaatgagc agtacgtaac ctggcacgac tgtgcgaatg      3060
     tcctgctccg caactttttt ccagctgcgg agaggccagt ggacattgtc gttcctcgcg      3120
     aagtaccccc agccctcgaa actttcgagg tggagatgtg catcgccaga gttcgcagca      3180
     ggcgctcacc tggcttggat ggcatcactg ggggtatggt caaagcggcc tggcgcgcca      3240
     tcccggagca catgacagcg ttgtattccc gctgcctggc agatggatat ttcccacttg      3300
     agtggaagcg cccacgtgtg gttgcgctcc tcaaaggcct cgacaaggac aggagtgatc      3360
     cagcgtccta tcgaggcatc tgcctgctgc ctgtctttgg caaagtgctg gaagggatca      3420
     tggtgaaccg tgtgaaggag atgctcacgg acgagagtcg atggcaattc ggctttcgcc      3480
     ccggacgctg tgtggaggat gcgtggaggc atgttctgag cagtgttgag gccagctcgg      3540
     cccgatatgt gctcggagtc ttcatcgact tcaaaggagc attcgaccat gtcgaatggg      3600
     atgcagcgtt acgccgacta tccgatctag gatgcaggga aattgggatc tggcgcagct      3660
     tcttttcgga ccgaaaagct agcatcgtca gcagctttgg cgaagctaat gtgaatgttt      3720
     cacgtggctg cccgcagggg tccatcagtg gtccattcat atggaacatt ttgatggatg      3780
     tgctcctgcg ccgccttgaa gcgcattgca ctttcagtgc atacgctgac gacttgctgc      3840
     tgctcgtcga aggaaattcc agatcccaac tggagctcac aggcgcccag ctaatggaga      3900
     tagttggagg atggggcatt gaggtaggcg tctcagtctc ggcaacgaag actgtgacga      3960
     tgctccttaa gggaaagctg tcagctggca ggaatcccgc cgtcagattt gcaggagcaa      4020
     atctacggta tgtgacgcaa tatcgttacc ttggcatcac ggctggcgag cggttgagtt      4080
     tcctcccgca tatcgcatcc ttacgcgatc ggctggccgg agtcgtcgga gccctgaccc      4140
     gtgtgctacg cgttgactgg ggactcagtc cgcgcgcacg gcgaaggata tatgccggac      4200
     tcatggtgcc ttgtgcatta tttggtgctt cggtgtggta cacggtggtg atgagactag      4260
     tcggcgccag gaggtcgctc aagtcctgcc atcgcatcat cctgattgga tgtttgccta      4320
     cgtgtcgaac ggtatctact gatgcccttg aagtgctggc tggagccccg ccgctggacc      4380
     ttgttgcgac gcgcaacgct atgcagttca agctgaagag gagctacccg atggtagagg      4440
     gcgattggct ctacgatcaa gacgtttcga cccttgatcg taccatgagg agagccttgc      4500
     tggacgaacg cttgttgcgt gaatggcaga tccggtggga tgacagcgaa cacggccgtg      4560
     ttacgcatag gttcatcccg gatgttagct tcgtgtacag ccgccccgac ttcagtttca      4620
     cgatgccgac cagtttcctc ataactggtc atggctcgtt gaatgctttt ctgcatgcgc      4680
     gcggtcttag cgagactgct ggatgcctat gtggccatcc cctggaggac tggctacacg      4740
     tattgtgtgc ctgccccctc tatgcggatg tgcgggatct gcaaggactt aggattcagc      4800
     agtcggaatc cggtgactgg accatggaga ggaccttgat ggaggcggag agcatgcaac      4860
     tgcttgaaga ctatgctcgc acagtcttca gcaggcgacg catgctgatg gatggcatgg      4920
     gacctggcag gccagtgccg gactgacgtt agtcaaaact ggtagtagaa ttatctgcga      4980
     gggtcggacc aaagtcctta aatttgggag acgaagtcct tcgggatcag tcgaaaggcc      5040
     gaccagagcc tcaatctggc agactctctt ctcggagaga gtcgaagggc tgaccagagc      5100
     cttaatctgg aagacaaatc caatctggag gcgtcgaagg gctgaccaga gccttaatct      5160
     ggaagacaaa tccaattctg gacgcgtcga agggctgacc agagccttaa tctggaagac      5220
     aaatccaatt tggaggcgtc gaagggctga ccagagcctc aatctggaag acaaatccaa      5280
     ttctggaggc gtcgaagggc tgaccagagc ctcaatctgg aagacaaatc caatttggag      5340
     gcgtcgaagg gctgaccaga gccttaatct ggaagacaaa tccaattttg gaggcgtcga      5400
     agggcggacc agagccttaa tctggtaggt tatctcttcg gaggtgccgc cggtgttaac      5460
     ccagtttcca ggttgtcgga aaccaaaatg ggcagtagtc gcggactact ttcagccgat      5520
     caaagctgca aattgtaaca gatttgaaat ttgaaccacg ggatgggcta gtgtccgagg      5580
     ctagcccagt gaggttggcc ccctttagtg ggagtatcgt ggtggctgtg gtgttacccg      5640
     ctgtgtctcc actatagttg gagcacagct gctgggtcca atgtgtattt ggaccacagc      5700
     cggaagctgt acccgtagtc agcagaggtt atgataggcc tcgcctcgac ccaagaggga      5760
     attgtgtccg acaacacaat tcgagttggt agctaaaagc gttcttttag gggcgttggt      5820
     ggacgcattg ttttcacccg ctgtactatg tgtcacatat gtggcacatg cgagtaccgt      5880
     ggttgtaaac ccccatcggg gtacacgtca cgttaaacaa atcaaggatt c               5931
//
ID   R1_DPe      repbase;    DNA;    INV; 5444 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 17.07, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   persimilis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DPe.
XX
NM   R1_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-5444
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           398..1840
FT                 /product="R1_DPe_1p"
FT                 /translation="VTPIEVATTRRAMEIETEADASDTSVASVGASSSSSV
FT                 PARRRGRPKSSAAKQGAKKIGLGIGLAGERPIPAERSPPTSLPFEQAPSTS
FT                 AAAAATTAASTSAAAAATAAAPLPPRCHTAATTAATTAATCPATDIVAAGY
FT                 SAIIAEMSAIRMAVSKAVLKGLMPPEASMEILVATNRYDELVMALAGEKVR
FT                 LEERARMPPPPRPAAAAHTGTTAVTTAAYATAFPGLPAPSAVAAPIPKPRD
FT                 TWSALIKSKNPEETSKELVERVKKTVVPTLGVRVHEVRELKSGGAIIRTPS
FT                 VSELRKVVASSKFTEAGLEVKKRPETKPQVVVYDVDTSITPEEFMEELFTK
FT                 NLEETMTAAEFKKSVHLGSKPWSVTDGATINVTLEVDAKAQEALRECVYIK
FT                 WFRCRCRSLVRTYACHRCAGFDHKVSQCRLKENVCHRCGQNGHNVARCPNP
FT                 VDCRNCRFKGYPAAHSMLSAACPIYGAVLARVQARH"
FT   CDS           1837..4956
FT                 /product="R1_DPe_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAAVMELGAIMRSSGRQFALVQE
FT                 PYVDGAGRITGLPSGMRVFQDRRGKAAIIVDEPDAICMPMETLTTDFGVCV
FT                 RVTGRFGSIFLCSVYCQFDTDLAPYLRYLDAVLLLGSRTPVIFGLDANAVS
FT                 PAWFSKLSEHNRGQANYARGELLSEWITEMRAGVLNEASRVFTFDNRRGQS
FT                 DIDVTIVNQAATMWATYDWEVKEWDTSDHNMIHVVVTTDPNDTVEPIAPVP
FT                 SWKLSNARWRLFEEEVVREIAELPEDIAESPLDNQVSALRSVVHSVCDRVL
FT                 GRSTPRAARKVVWWTAELHSKRREVRRLRRRLQDARRHETDAAEELVLALR
FT                 ISSAQYKKLILRSKEDNWRRFVGENRDDPWGHVYRICRGRKKSTEIGCLRT
FT                 DGRLVATWRDCAGVLLRNFFPVAETNAHIAIPIEAPPALEAFEVDACVARL
FT                 KSRRSPGMDGITGAICKALWRAIPQHMTAMYSRCLETGYFPTEWKHPRVVP
FT                 LLKGPDKDRTDPTSYRGICLLPVLGKVLEGIMVNRLKDTIPDGCRWQFGFR
FT                 QGRCVEDAWKHVVSTVSASRSKYVLGVFVDFKGAFDNVEWNAALRRLLELG
FT                 CREASLWRSFFSGRSASIVSRHGVATVPVTRGCPQGSISGPFIWNILMDVL
FT                 LQRLEPLGALSAYADDLLLLIEGNARSELEQKGGELMSIVGAWGVEVGVAV
FT                 STSKTAIMLLKGILRRPPVVRFAGASLPYKRKYRYLGITVGERLSFLPHIT
FT                 GLRDKLTGVVGALSRVLRVDWGLSPRAKRTIYAGLMVPCALFGASVWSVVT
FT                 TTQVVARRHLLACQRIVLIGCLPVCRTVSTMALQVLAGAPPFDLVARRLAI
FT                 SFKLKRDYPLEESDWLYGEDLANLSWKQKMARLDEDLLCEWQRRWDDGDSP
FT                 GRVTHRFIPNAGFVYSERRFGFTLRAGFLLTGHGSLNAFLHGRSLSDTPAC
FT                 LCGAEREDWQHFLCACPLYTDLRDLDGLGVQYTDGDWTFSDVTASQERMRT
FT                 LDRFAGLAFSRRQQLLNAQAAHGLGGFPIQAGRG"
XX
SQ   Sequence 5444 BP; 1230 A; 1452 C; 1641 G; 1121 T; 0 other;
     cagttgcttt ttgactgcca ttcgaagcag acgtgttttt caagcggtcc gctataccgt        60
     cgttcgaatt aagtaaaaag tgatttttcc aagtggaaaa tatatcaaaa ttgccgcgag       120
     atcacgcgct gttcgtgagt gaaatcgggt gttaatttgg tgaaagaaca aagcagatat       180
     ttgcaaatta atatttgcaa aataaacgct aaaaacaacc acgtgcggaa ccctagttcg       240
     taaacaagtg cgaatagttc gacaacaagt cggaatagtt cgacagcacg ttcgagttcg       300
     aagctttggt tcgaagcttt ggctcgagtt cgaagcgttc ggttcgtgtc tccgctgaga       360
     cgttggttcg agtctccact aagtgccgat tagttgagtc acgccaatag aggtagccac       420
     aactcgccgg gctatggaaa tagagacgga ggccgacgcc agcgacacta gcgtggctag       480
     tgtaggggcg agctcgtcgt cgagcgttcc cgcccgcagg cggggtcggc cgaagtcctc       540
     agccgccaaa cagggagcca aaaagatcgg gcttgggatt gggctagctg gagagcggcc       600
     gatcccagcc gagagatcgc cgccaacgtc gctccccttt gagcaggctc catccacctc       660
     tgccgctgcc gctgccacca ccgctgccag tacttctgcc gccgctgccg ccaccgctgc       720
     cgccccgctg ccgcctcgct gccacaccgc tgccaccacc gctgccacca ccgctgccac       780
     atgcccggca actgacattg tcgcggcagg ctactcggcc atcatcgcag aaatgtctgc       840
     gataaggatg gcggtgagca aggctgtcct taaggggctg atgccgcccg aggcctcaat       900
     ggaaatcctc gtcgcgacca accggtacga cgagttggtc atggccctgg ctggggaaaa       960
     ggtgcgcctg gaggagaggg caaggatgcc gcctccaccg agacccgctg ctgctgccca      1020
     cacgggcacc actgccgtca caaccgctgc gtatgcgaca gccttcccag gcctgcccgc      1080
     accgagcgcc gtcgctgcac cgatcccaaa gcctagggat acctggtctg ctctaataaa      1140
     gagcaaaaac ccggaggaga ccagcaagga gcttgtggag cgtgttaaga agaccgtggt      1200
     gccgactctt ggagtccgcg tccacgaggt tcgcgagctg aagagcggag gagcgattat      1260
     tcgcacccct tcagtgagcg aactgaggaa ggtagtggcc agcagcaaat tcaccgaagc      1320
     aggattggag gtcaagaaga ggccggagac caagcctcag gtcgtggtgt acgacgtgga      1380
     cacgtccata acaccggaag agttcatgga ggagctcttc acaaagaacc tggaggagac      1440
     catgactgcc gcggagttca aaaagtcggt tcacctgggc agtaaaccct ggtcggtcac      1500
     cgacggcgcc acgatcaacg tgacgctaga ggtcgacgca aaggcacagg aggcgttgcg      1560
     cgaatgcgta tacatcaagt ggtttagatg ccgctgccgc tccttggtca gaacatacgc      1620
     ctgccacaga tgtgcaggct tcgaccacaa ggtgtcgcaa tgtcgcctaa aggagaacgt      1680
     gtgccaccgg tgtggacaga acggccacaa cgttgcacgg tgtcccaacc ccgtggactg      1740
     ccgcaactgc cgcttcaagg ggtaccctgc agcacattcc atgctgtcag cggcgtgccc      1800
     gatctacgga gcggtactgg cgagggtgca agctagacat taatgtttag cttcatccaa      1860
     gctaattgtg gccgtggccg agcggctgtg atggaactcg gagccatcat gcgcagctct      1920
     ggccgtcagt tcgcactggt ccaggagccg tacgtcgatg gagcagggcg gattaccggc      1980
     cttccttctg gaatgcgagt tttccaggac cgccgaggaa aagctgctat catcgtcgac      2040
     gaaccggacg ccatctgcat gccaatggag acccttacca cggattttgg agtatgcgtc      2100
     agagttacgg gaagattcgg ctcaatcttc ctatgctccg tgtactgcca attcgacacc      2160
     gacttggcgc cgtacctcag gtacttagat gcggtgctgc tgctgggcag ccgcactcct      2220
     gtcatctttg ggctcgacgc gaacgcagta tccccagcgt ggtttagcaa gctctccgaa      2280
     cacaatcggg ggcaagctaa ctatgcacgg ggtgagctgc tgtctgagtg gataaccgag      2340
     atgagagccg gcgtgctcaa tgaagccagt cgggtgttta cattcgataa ccgtagaggc      2400
     caaagcgata tcgatgtgac aatcgtcaac caagctgcga ctatgtgggc cacatacgat      2460
     tgggaagtga aggaatggga caccagcgat cacaacatga tccatgttgt ggtgacgact      2520
     gacccgaacg acacagttga gcccattgct cctgtgccgt catggaagct ttccaatgcg      2580
     cgctggcgat tgttcgagga ggaagtggta agggagattg ccgaattacc ggaagacatc      2640
     gccgaatcgc cgttggacaa ccaagtgtct gcactgcgct ctgtagtgca cagtgtgtgc      2700
     gacagagtgc tgggacgcag cacaccgaga gccgcgagaa aagtagtttg gtggactgcc      2760
     gaactacact ccaaacgccg agaggtcagg agactgaggc gaaggctcca ggacgctcgt      2820
     cggcatgaga ccgacgcagc agaggaactt gtgctcgcgt tgaggatctc ctcagcgcag      2880
     tacaagaagc tcatcctgag atcgaaggaa gacaactggc gacgcttcgt gggagagaac      2940
     agagatgatc catgggggca cgtctacagg atttgccgag gccgcaaaaa gagcacggag      3000
     attggatgcc ttcgaacgga tggtaggctg gtcgcaacat ggcgcgactg tgcgggtgtg      3060
     ctccttcgca acttctttcc tgttgcggag acgaatgcac acattgccat cccgatcgag      3120
     gctccaccgg ccctcgaagc tttcgaggtt gatgcatgcg tcgccaggtt gaagagcaga      3180
     cgctctcccg gcatggacgg catcacaggt gccatttgca aggcattgtg gcgtgccatc      3240
     cctcagcaca tgacagcgat gtattcccgc tgcctggaga cagggtattt cccaacggaa      3300
     tggaagcatc ccagggtggt tccactcctg aagggacccg ataaggaccg gaccgatcct      3360
     acctcatatc ggggtatctg tctgttgcca gtgctgggca aagtgcttga gggcatcatg      3420
     gtgaatcgtc tgaaggacac cattccggat ggctgcagat ggcaatttgg ctttcgccaa      3480
     ggacgttgtg tggaggatgc ttggaaacac gtcgtgagta ctgtttcggc cagccggtcg      3540
     aaatacgtgc tcggagtctt cgtggatttc aagggagcct tcgacaacgt tgagtggaat      3600
     gctgcactac gccgcctcct tgagctggga tgccgagaag caagcttgtg gcgaagtttc      3660
     ttctccggcc ggagtgcgag catcgtcagt aggcatggag tagccactgt tccggtgaca      3720
     agaggttgcc cgcaggggtc cataagtggt ccatttatat ggaacatctt aatggacgtg      3780
     ttgctccagc gcttagagcc ccttggtgcg ctcagcgcgt atgctgacga cttgctcctc      3840
     ctcatcgaag ggaatgcccg atcagagctc gaacaaaaag gaggtgagtt aatgtccatc      3900
     gtaggcgctt ggggagttga agtcggcgtt gccgtttcaa ctagcaagac ggcgatcatg      3960
     ctgctcaaag gcatacttag acggccgcca gtggtacggt ttgctggagc aagcctgcca      4020
     tataagcgca agtatcggta cctaggcatc acggtcggcg agcggttgag ttttctcccg      4080
     cacatcacgg gcttgcgtga taagctgacc ggagtcgtag gggcattgtc gcgcgtactg      4140
     cgggtcgact ggggactcag tccccgcgca aagcggacaa tatatgccgg actcatggtg      4200
     ccctgtgcac tatttggtgc ctcggtttgg tctgtcgtga cgacgacgca agtggttgcc      4260
     aggaggcatc tgcttgcgtg ccaaaggatc gtcctgattg gatgcctacc ggtatgccga      4320
     acagtgtcca ccatggcgct gcaagtacta gctggagccc ccccgtttga tctggttgcc      4380
     agacgcctgg caatcagctt caaactaaag cgtgactacc cgctggagga gagcgattgg      4440
     ctgtacggcg aagatttggc aaatcttagc tggaagcaga agatggcgcg actagacgaa      4500
     gacctgttgt gcgagtggca acgcagatgg gatgatggtg actccccagg acgggtgacg      4560
     caccgcttca tcccgaacgc aggcttcgtc tacagcgaac gaaggtttgg cttcacgctg      4620
     cgcgctgggt tcctgctgac gggccacgga tcgctcaatg catttctgca tggaagaagc      4680
     cttagcgaca cgccagcatg tctatgcggc gcagaacgcg aggattggca gcacttccta      4740
     tgtgcttgtc ccctctatac agacttgcga gacctcgatg gacttggagt gcagtacacg      4800
     gatggcgact ggaccttctc cgatgtgacg gcttctcagg agagaatgcg gactctcgac      4860
     aggttcgccg gactggcgtt ctccaggcga caacagctgc tgaatgcgca agcggcgcac      4920
     gggctgggtg gattccctat ccaggccggt cggggctaaa agggaggatc gagctgagtc      4980
     cttaagatcg gtaccacggg ttgtgcagtt ccaaggctgc acattgaggt cggcccccta      5040
     gtgggagtat cgtggtggct gtggttgata cccaaacgtt acgcggggag agccgctagg      5100
     ctcctcgtgg agttgcgctc tcaaccgggt gccgagaccc atagatcgga agacgtgtta      5160
     gatacacctc gcccctcacc aagggggatt gtatgcccga ccaggatact ttcaattggt      5220
     accagaagag tcgctatgta catagctata gcttcttttt aggggcgcta actggcgcat      5280
     tgtaccaggt tcctgcgtat gtagcggtgg tgcgtgatgg cgtgatatat gtaaatatat      5340
     cgcactaatc gaggctaagc tgcaaataaa cattagacgc cgtggttgaa atccctccct      5400
     gaggaaccgc cacgtaaaat aaagctgaga gatcagattc attc                       5444
//
ID   R1_DPs      repbase;    DNA;    INV; 5447 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   pseudoobscura.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DPs.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-5447
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           398..1843
FT                 /product="R1_DPs_1p"
FT                 /translation="VTPIEVATTRRAMEIETEADASDTSVASVGASSSSSV
FT                 PARRRGRPKSSAAKQGAKKIGLGIGLAGERPIPAERSPPTSLPFEQAPSTS
FT                 AAAAATTAASTSAAAATTAAATAAATAAATAATTAATTAATCPATAIVAAG
FT                 YSAIIAEMSAIRMAVSEAVLKGLMPPEASMEILVATNRYDELVMALAGEKV
FT                 RLEERARMPPPPRPAAAAHTGTTAVTAAAYATAFPGLPAPSAVAAPIPKPR
FT                 DTWSALIKSKNPEETSKELVERVRKTVVPTLGVRVHEVRELKSGGAIIRTP
FT                 SVSELRKVVASSKFTEAGLEVKKRPETKPQVVVYDVDTSITPEEFMEELFT
FT                 KNLEETMTAAEFKKSVHLGSKPWSVTDGATINVTLEVDAKAQEALRECVYI
FT                 KWFRCRCRSLVRTYACHRCAGFDHKVSQCRLKENVCHRCGQNGHNVARCPN
FT                 PVDCRNCRFKGYPAAHSMLSAACPIYGAVLARVQARH"
FT   CDS           1840..4959
FT                 /product="R1_DPs_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAAVMELGAIMRSSGRQFALVQE
FT                 PYVDGAGRITGLPSGMRVFQDRRGKAAIIVDEPDAICMPMETLTTDFGVCV
FT                 RVTGRFGSIFLCSVYCQFDTDLAPYLRYLDAVLLLGSRTPVIFGLDANAVS
FT                 PAWFSKLSGHNRGQANYARGELLSEWITEMRAGVLNEASRVFTFDNRRGQS
FT                 DIDVTIVNQAATMWATYDWEVKEWDTSDHNMIHVVVTTDPNDTVEPIAPVP
FT                 SWKLSNARWRLFEEEVVREIAELPEDIAESPLDNQVSALRSVVHSVCDRVL
FT                 GRSTPRAARKVVWWTAELHSKRREVRRLRRRLQDARRHETDAAEELVLALR
FT                 ISSAQYKKLILRSKEDNWRRFVGENRDDPWGHVYRICRGRKKSTEIGCLRT
FT                 DGRLVATWRDCAGVLLRNFFPVAETNAHIAIPIEAPPALEAFEVDACVARL
FT                 KSRRSPGMDGITGAICKALWRAIPQHMTAMYSRCLETGYFPTEWKHPRVVP
FT                 LLKGPDKDRTDPTSYRGICLLPVLGKVLEGIMVNRLKDTIPDGCRWQFGFR
FT                 QGRCVEDAWKHVVSTVSASRSKYVLGVFVDFKGAFDNVEWNAALRRLLELG
FT                 CREASLWRSFFSGRSASIVSRHGVATVPVTRGCPQGSISGPFIWNILMDVL
FT                 LQRLEPLGALSAYADDLLLLIEGNARSELEQKGGELMSIVGAWGVEVGVAV
FT                 STSKTAIMLLKGILRRPPVVRFAGASLPYKRKYRYLGITVGERLSFLPHIT
FT                 GLRDKLTGVVGALSRVLRVDWGLSPRAKRTIYAGLMVPCALFGASVWSVVT
FT                 TTQVVARRHLLACQRIVLIGCLPVCRTVSTMALQVLAGAPPFDLVARRLAI
FT                 SFKLKRDYPLEESDWLYGEDLANLSWKQKMARLDEDLLCEWQRRWDDGDSP
FT                 GRVTHRFIPNAGFVYSERRFGFTLRAGFLLTGHGSLNAFLHGRSLSDTPAC
FT                 LCGAEREDWQHFLCACPLYTDLRDLDGLGVQYTDGDWTFSDVTASQERMRT
FT                 LDRFAGLAFSRRQQLLNAQAAHGLGGFPIQAGRG"
XX
SQ   Sequence 5447 BP; 1227 A; 1452 C; 1649 G; 1119 T; 0 other;
     cagttgcttt ttgactgcca ctcgaagcag acgtgttttt caagcggtcc gctataccgt        60
     cgttcgaata aagtaaaaag tgatttttcc aagtggaaaa tacatcaaaa ttgccgcgag       120
     atcacgcgct gttcgtgagt gaaatcgggt gttaatttgg tgaaagaaca aagcagatat       180
     ttgcaaatta atatttgcag aataaacgct aaaaacaacc acgtgcggaa ccctagttcg       240
     taaacaagtg cgaatagttc gacaacaagt cggaatagtt cgacagcacg ttcgagttcg       300
     aagctttggt tcgaagcttt ggctcgagtt cgaagcgttc ggttcgtgtc ttcgctgaga       360
     cgttggttcg agtctccact aagtgccgat tagttgagtc acgccaatag aggtagccac       420
     aacccgccgg gctatggaaa tagagacgga ggccgacgcc agcgacacta gcgtggctag       480
     tgtaggggcg agctcgtcgt cgagcgttcc cgcccgcagg cggggtcggc cgaagtcctc       540
     agccgccaaa cagggagcca aaaagatcgg gcttgggatt gggctagctg gagagcggcc       600
     gatcccagcc gagagatcgc cgccaacgtc gctccccttt gagcaggctc catccacctc       660
     tgccgctgcc gctgccacca ccgctgccag tacttctgcc gccgctgcca ccaccgctgc       720
     cgccaccgct gccgccaccg ctgccgccac cgctgccacc accgctgcca ccaccgctgc       780
     cacatgcccg gcaactgcca ttgtcgcggc aggttactcg gccatcatcg cagaaatgtc       840
     tgcaataagg atggcggtga gcgaggctgt ccttaagggg ctgatgccgc ccgaggcctc       900
     aatggaaatc ctcgtcgcga ccaaccggta cgacgagttg gtcatggccc tggctgggga       960
     aaaggtgcgc ctggaggaga gggcaaggat gccgcctcca ccgagacccg ctgctgctgc      1020
     ccacacgggc accactgccg tcacagccgc tgcgtatgcg acagccttcc caggcctgcc      1080
     cgcaccgagc gccgtcgctg caccgatccc aaagcctagg gatacctggt ctgctctaat      1140
     aaagagcaaa aacccggagg agaccagcaa ggagctagtg gagcgtgtta ggaagaccgt      1200
     ggtgccgact cttggagtcc gcgtccacga ggttcgcgag ctgaagagcg gaggagcgat      1260
     tattcgcacc ccttcagtga gcgaactgag gaaggtagtg gccagcagca aattcaccga      1320
     agcaggattg gaggtgaaga agaggccgga gaccaagcct caggtcgtgg tgtatgacgt      1380
     ggacacgtcc ataacaccgg aagagttcat ggaggagctc ttcacaaaga acctggagga      1440
     gaccatgaca gccgcggagt tcaaaaagtc ggttcacctg ggcagtaaac cctggtcggt      1500
     caccgacggc gccacgatca acgtgacgct agaggtcgac gcaaaggcac aggaggcgtt      1560
     gcgcgaatgc gtatacatta agtggtttag atgccgctgc cgctccttgg tcagaacata      1620
     cgcctgccac agatgtgcag gcttcgacca caaggtgtcg caatgtcgcc taaaggagaa      1680
     cgtgtgccac cggtgtggac agaacggcca caacgttgca cggtgtccca accccgtgga      1740
     ctgccgcaac tgccgcttca aggggtaccc tgcagcacat tccatgctgt cagcggcgtg      1800
     cccgatctac ggagcggtac tggcgagggt gcaagctaga cattaatgtt tagcttcatc      1860
     caagctaatt gtggccgtgg ccgagcggct gtgatggaac tcggagccat catgcgcagc      1920
     tctggccgtc agttcgcact ggtccaggag ccgtacgtcg atggagcagg gcggattacc      1980
     ggccttcctt ctggaatgcg agttttccag gaccgccgag gaaaagctgc tatcatcgtc      2040
     gacgaaccgg acgccatctg catgccaatg gagaccctta ccacggattt tggagtatgc      2100
     gtcagagtta cgggaagatt cggctcaatc ttcctatgct ccgtgtactg ccaattcgac      2160
     accgacttgg cgccgtacct caggtactta gatgcggtgc tgctgctggg cagccgcact      2220
     cctgtcatct ttgggctcga cgcgaacgca gtatccccag cgtggtttag caagctctcc      2280
     ggacacaatc gggggcaagc taactatgca cggggtgagc tgctgtctga gtggataacc      2340
     gagatgagag ccggcgtgct caatgaagcc agtcgggtgt ttacattcga taaccgtaga      2400
     ggccaaagcg atatcgatgt gacaatcgtc aaccaagctg cgactatgtg ggccacatac      2460
     gattgggaag tgaaggaatg ggacaccagc gatcacaaca tgatccatgt tgtggtgacg      2520
     actgacccga acgacacagt tgagcccatt gctcctgtgc cgtcatggaa gctttccaat      2580
     gcgcgctggc gattgttcga ggaggaagtg gtaagggaga ttgccgaatt accggaagac      2640
     atcgccgaat cgccgttgga caaccaagtg tctgcactgc gctctgtagt gcacagtgtg      2700
     tgcgacagag tgctgggacg cagcacaccg agagccgcga gaaaagtagt ttggtggact      2760
     gccgaactac actccaaacg ccgagaggtc aggagactga ggcgaaggct ccaggacgct      2820
     cgtcggcatg agaccgacgc agcagaggaa cttgtgctcg cgttgaggat ctcctcagcg      2880
     cagtacaaga agctcatcct gagatcgaag gaagacaact ggcgacgctt cgtgggagag      2940
     aacagagatg atccatgggg gcacgtctac aggatttgcc gaggccgcaa aaagagcacg      3000
     gagattggat gccttcgaac ggatggtagg ctggtcgcaa catggcgcga ctgtgcgggt      3060
     gtgctccttc gcaacttctt tcctgttgcg gagacgaatg cacacattgc catcccgatc      3120
     gaggctccac cggccctcga agctttcgag gttgatgcat gcgtcgccag gttgaagagc      3180
     agacgctctc ccggcatgga cggcatcaca ggtgccattt gcaaggcatt gtggcgtgcc      3240
     atccctcagc acatgacagc gatgtattcc cgctgcctgg agacagggta tttcccaacg      3300
     gaatggaagc atcccagggt ggttccactc ctgaagggac ccgataagga ccggaccgat      3360
     cctacctcat atcggggtat ctgtctgttg ccagtgctgg gcaaagtgct tgagggcatc      3420
     atggtgaatc gtctgaagga caccattccg gatggctgca gatggcaatt tggctttcgc      3480
     caaggacgtt gtgtggagga tgcttggaaa cacgtcgtga gtactgtttc ggccagccgg      3540
     tcgaaatacg tgctcggagt cttcgtggat ttcaagggag ccttcgacaa cgttgagtgg      3600
     aatgctgcac tacgccgcct ccttgagctg ggatgccgag aagcaagctt gtggcgaagt      3660
     ttcttctccg gccggagtgc gagcatcgtc agtaggcatg gagtagccac tgttccggtg      3720
     acaagaggtt gcccgcaggg gtccataagt ggtccgttta tatggaacat cttaatggac      3780
     gtgttgctcc agcgcttaga gccccttggt gcgctcagcg cgtatgctga cgacttgctc      3840
     ctcctcatcg aagggaatgc ccgatcagag ctcgaacaaa aaggaggtga gttaatgtcc      3900
     atcgtaggcg cttggggagt tgaagtcggc gttgccgttt caactagcaa gacggcgatc      3960
     atgctgctca aaggcatact tagacggccg ccagtggtac ggtttgctgg agcaagcctg      4020
     ccatataagc gcaagtatcg gtacctaggc atcacggtcg gcgagcggtt gagttttctc      4080
     ccgcacatca cgggcttgcg tgataagctg accggagtcg taggggcatt gtcgcgcgta      4140
     ctgcgggtcg actggggact cagtccccgc gcaaagcgga caatatatgc cggactcatg      4200
     gtgccctgtg cactatttgg tgcctcggtt tggtctgtcg tgacgacgac gcaagtggtt      4260
     gccaggaggc atctgcttgc gtgccaaagg atcgtcctga ttggatgcct accggtatgc      4320
     cgaacagtgt ccaccatggc gctgcaagta ctagctggag cccccccgtt tgatctggtt      4380
     gccagacgcc tggcaatcag cttcaaacta aagcgtgact acccgctgga ggagagcgat      4440
     tggctgtacg gcgaagattt ggcaaatctt agctggaagc agaagatggc gcgactagac      4500
     gaagacctgt tgtgcgagtg gcaacgcaga tgggatgatg gtgactcccc aggacgggtg      4560
     acgcaccgct tcatcccgaa cgcaggcttc gtctacagcg aacgaaggtt tggcttcacg      4620
     ctgcgcgctg ggttcctgct gacgggccac ggatcgctca atgcatttct gcatggaaga      4680
     agccttagcg acacgccagc atgtctatgc ggcgcagaac gcgaggattg gcagcacttc      4740
     ctatgtgctt gtcccctcta tacagacttg cgagacctcg atggacttgg agtgcagtac      4800
     acggatggcg actggacctt ctccgatgtg acggcttctc aggagagaat gcggactctc      4860
     gacaggttcg ccggactggc gttctccagg cgacagcagc tgctgaatgc gcaagcggcg      4920
     cacgggctgg gtggattccc tatccaggcc ggtcggggct aaaagggagg atcgagctga      4980
     gtccttaaga tcggtaccac gggttgtgca gttccaaggc tgcacattga ggtcggcccc      5040
     ctagtgggag tatcgtggtg gctgtggttg atacccaaac gttacgcggg gagagccgct      5100
     aggctcctcg tggagttgcg ctctcaaccg ggtgccgaga cccatagatc ggaagacgtg      5160
     ttagatacac ctcgcccctc accaaggggg attgtatgcc cgaccaggat actttcaatt      5220
     ggtaccagaa gagtcgctat gtacatagct atagcttctt tttaggggcg ttaactggcg      5280
     cattgtacca ggttcctgcg tatgtagcgg tggtgcgtga tggcgtgata tatgtaaata      5340
     tatcgcacta atcgaggcta agctgcagat aaacattaga cgccgtggtt gaaatccctc      5400
     cctgaggaac cgccacgtaa aataaagctg agagatcaga ttcattc                    5447
//
ID   R1_DSe      repbase;    DNA;    INV; 5417 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   sechellia.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5417
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           357..1790
FT                 /product="R1_DSe_1p"
FT                 /translation="TSIRLLASTVGGATIVFMPMESDSSASALSGSSASMK
FT                 SRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEPFSSLEDARAAT
FT                 ENAAIDAAPPHAAATAADPTAAPAADHTAASAVFTAAKIVATTATAATAAA
FT                 RAGQAAMMAELSATQRMVRSSFRRLGEVDTEELSYAISRYDELVLALMLRC
FT                 GELETRLAMPPPPPPSLNLLKNTAANAPQMQQVAPIAAPRTTKVRETWSAV
FT                 VKCDDPALSGKDIAEKVRTMVAPSLGVRVHEVRELRRGGGAIIRTPSVGEL
FT                 QKVVASKRFAEVGLNVARNAAEKPKVVVYDVDTAIGPEEFMKELHENNFDS
FT                 EMNLAQFKKSVHLVTKAWSVADGATVNVTLEVDDRAMAKLDVGRVYIKWFS
FT                 FRCRSQVRTYACHRCVGFDHKVSECRQKDSVCRQCGQQGHTAAKCQNPVDC
FT                 RNCRHRGQPSGHYMLSSVCPIYGALLARVQARH"
FT   CDS           1787..4849
FT                 /product="R1_DSe_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQE
FT                 PYLGGDGMDVLPEGMRIFIDRRGKAAILVDHQEAICMPVETLTTDYGVCLV
FT                 VKGSFGSIFLCAAYCQYDAPLEPYIRYMDAVLLQASRTPAILGLDANAVSP
FT                 MWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNYRATSD
FT                 IDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARAVESIAPVPS
FT                 WNFSNARWRLFKEEMVSRAAELPENFSESPLDQQVSTLRSIVHNVCDIALG
FT                 RKSIRLPNRRARWWTADLCDARREVRRLRRLLQNGRRHDDDAAIERVLVDL
FT                 RRASANYKKLIWRAKMDEWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLR
FT                 VNGEMITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDACVAR
FT                 LKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVV
FT                 SLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGF
FT                 RQGRCVEDAWRHVKSSVCASPAQYVLGTFVDFKGAFDNVEWSAALRRLADL
FT                 GCREMGLWQSFFSGRRAVIRSSSGTVDVPVTRGCPQGSISGPFIWDILMDV
FT                 LLQRLQPYCQLSAYADDLLLLVEGNSRAELEEKGAELMSIVEAWGAEVGVT
FT                 VSTSKTVIMLLKGALRRAPTVRFAGANLPYVRSCRYLGITVSEGMKFLTHI
FT                 ASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT
FT                 AEQVAARRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKFLAV
FT                 KYKLKRGYPLEENDWLYGEDTTCLSWKQRKTRLEECLLQNWQNRWDDDSEP
FT                 GRVTHKFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLQGRALSDTTAC
FT                 ACGDPYEDWMHILCACPLYADLRNLDGLGVQRLGENWTFNRILEDQQRIQR
FT                 LAAFADEVFRRRRGI"
XX
SQ   Sequence 5417 BP; 1211 A; 1353 C; 1654 G; 1199 T; 0 other;
     cggacgtgtt ttcgttgcgc tcgtgtacag attgcgaaga acttggtttt ccgtgtttgg        60
     aaagtaataa aatcggtgaa ttagtgctcc gcgaaagtcg tgtgctaatt ttcgtgtgtt       120
     ataaacaagc ggtttggaag taattaacaa ttaattgttg ggaattttcc acttagcacg       180
     tgctgaaggc gaacttacga gtaagttttt cgagtaagct ttttgatcag ctgtcacaaa       240
     gcttattggt gggagtcact gctaaggttt gtgtctaggg agagttttag tgctaccaga       300
     ctctaccgat aggtggagct cgagttccag agcaactacc ttttgtcagc gagtaaacga       360
     gcatacggtt gctggcgtcg acggtaggtg gagccaccat cgtatttatg ccgatggaga       420
     gcgacagcag cgcgagtgcc ttgagcggaa gtagtgcctc gatgaagtcc agacgaggca       480
     ggcgcagaag ccatctggca tctaagagct cggcgccaac gcaggcgaaa ttggttgccc       540
     tggcatcgaa tggagtgcca gaacccgttg gggtactgga ggagccgttt tcgtcgctgg       600
     aggacgcccg ggcggctacg gagaacgctg ccattgatgc tgcccccccc cacgctgctg       660
     ccaccgctgc tgatcctact gctgcccctg ctgccgacca cactgctgcc tccgccgttt       720
     tcactgctgc taaaattgtt gccaccactg ccactgccgc caccgctgcc gcccgtgctg       780
     ggcaagcagc catgatggca gagctgtcgg ccacacagcg catggtgaga agcagcttcc       840
     gcagactagg agaagtggac acggaagagc tctcatatgc tatcagccgc tacgatgagc       900
     tggtgttggc gctaatgctc cggtgcggag agctggagac gcggcttgct atgccgccac       960
     cgccgccgcc gtcgttgaat ctgttgaaaa atacggccgc caatgctccc cagatgcagc      1020
     aggttgcacc catcgctgcc ccgcggacta ccaaggtccg cgagacgtgg tcagcggtgg      1080
     tgaagtgcga cgaccctgcg ctatcgggga aagacatagc ggaaaaggtg cgaacgatgg      1140
     ttgcaccctc tctcggagtc agagtacacg aggtccgtga gctccgtcga ggtggtggtg      1200
     cgatcattcg cactccttcg gtgggagagc tgcagaaggt ggtcgcttca aaaagattcg      1260
     ccgaggttgg cctaaatgtg gcacggaatg cggccgagaa gccgaaggtc gtcgtatatg      1320
     acgtcgacac agctatcggc cctgaggagt ttatgaagga gctccacgaa aacaacttcg      1380
     acagcgaaat gaatctggcc cagtttaaga agtcagtgca cctggtgacc aaggcgtggt      1440
     cggtagctga cggcgccaca gtaaatgtga cgctggaggt tgacgaccgg gcgatggcga      1500
     agcttgatgt aggtcgtgtc tacatcaagt ggttctcatt ccgatgccgg tcacaggtcc      1560
     gcacatacgc ctgccacaga tgtgtgggtt tcgaccacaa ggtcagcgaa tgccggcaga      1620
     aggatagtgt ctgtcgccag tgcgggcaac aaggccacac tgcggcaaag tgccaaaacc      1680
     cggtggactg ccggaactgc cgccacagag ggcaaccctc ggggcattac atgctctcga      1740
     gcgtttgccc gatatacggg gcgttgctgg cgagggtgca agctagacac taatgtttag      1800
     cttcatccaa gcgaactgtg gccgaggccg agctgcgacc atcgagctcg gagtccgact      1860
     caggagatcg gagtctatgt tcgcgctggt gcaggagccg tatctcggcg gggacggaat      1920
     ggatgtgctg cctgaaggaa tgagaatttt catcgatcgg cgagggaagg cagccatcct      1980
     agtggatcac caggaagcca tctgtatgcc agtggagacc ctcaccacag attatggcgt      2040
     atgtctggtc gtgaaaggga gttttggctc aatcttcctt tgcgccgcat actgccagta      2100
     tgatgcacct ctggaaccgt acatccggta catggatgcg gtcctgctgc aggccagcag      2160
     aacccccgca atcctgggcc tcgacgcgaa tgcagtgtcc cccatgtggc ttagcaaact      2220
     ctctcgtcat gccgaggggc aagctaacta cagacggggt gagctgctgt cagagtggat      2280
     gctggaggca agagtcgccg ccctaaacca gtcaacagag gtgtacacgt tcgataatta      2340
     cagagctaca agcgatatcg acgtgacaat cgtcaatgag gcagcatcta tgtgggccac      2400
     atatgagtgg agagtggacg agtgggaatt gagtgaccac aacatcatta ctgttgtggc      2460
     cgaaccaact accgcgcgcg cagttgagag catagctcct gtgccgtcct ggaacttctc      2520
     caatgcacgt tggcgattgt tcaaggagga aatggtgagt agagcagccg aacttccgga      2580
     aaacttctca gagtcgccgt tggaccagca agtttcgacc ctgcgcagta tagtacataa      2640
     tgtatgtgat attgcgctgg gaagaaagtc catccgattg cccaacagga gagcacgttg      2700
     gtggactgcc gacctctgtg atgcaaggcg cgaagtccgg agacttcgtc gcctacttca      2760
     aaatggaagg cgtcatgatg atgatgccgc aatagagcgt gtattggtcg acctgaggcg      2820
     ggcctcagcc aactacaaga agctcatttg gagggcgaaa atggatgagt ggaaacgctt      2880
     cgtgggagat catgccgacg acccatgggg gcgcgtctat aagatttgcc gaggccgcag      2940
     gaagtgcacg gagattgggt gcctccgcgt gaatggcgag atgatcaccg attggggtga      3000
     ctgtgcacga gtgctcctcc gcaatttctt cccagttgcg gagtccgaag caccgactgc      3060
     catcgcggag gaagtcccac cggccctcga agtattcgag gttgatgcat gtgttgcccg      3120
     gttgaagagc aggcgctctc ccggcttgga cggcattaat ggcactatct gcaaggcagt      3180
     ctggcgcgcc atacccgagc accttgcatc gttgttttcc cgatgcatcc gattaggata      3240
     ctttcccgct gagtggaagt gcccacgagt tgtctcgctg ctcaaagggc cagataagga      3300
     caaatgtgag ccctcctcat atagaggaat atgcttgcta ccagtctttg gtaaggtgct      3360
     cgaggccatc atggtgaatc gtgtgagaga agttcttccg gaaggctgca gatggcaatt      3420
     tggatttcgc caaggacgat gtgtggagga tgcttggagg cacgtgaaga gcagtgtttg      3480
     tgccagcccg gcgcaatacg tgctcggcac attcgtggac ttcaaaggag cattcgacaa      3540
     cgtcgaatgg agtgctgcac tccgccgact agccgacttg ggatgccggg agatgggctt      3600
     gtggcagagc tttttctccg gccgaagagc agtgatccga agcagttccg gtactgtgga      3660
     tgtaccggta actagaggct gcccgcaggg gtcaatcagt ggcccattta tctgggacat      3720
     actgatggat gtactgcttc agcgtctcca gccgtattgc cagctgagtg catacgcgga      3780
     tgacttgctg cttctcgtcg agggaaattc ccgagctgag ctagaggaaa aaggtgcaga      3840
     gctgatgtcc atcgtagaag cgtggggagc ggaagttggc gttaccgtct cgaccagcaa      3900
     gacggtaata atgctgctga aaggtgcctt gagacgtgcg cctacggtga ggtttgctgg      3960
     agcgaacctt ccgtatgtgc gtagctgtcg gtaccttggc atcacggtca gtgaaggaat      4020
     gaaattcctc acgcacatag cttcgcttcg ccagcggatg accggagtcg ttggagcatt      4080
     ggcgcgtgtg cttcgagccg actggggctt cagtcctcga gccaggcgga ccatatatga      4140
     cggactcatg gcaccttgtg tgctgtttgg tgccccggta tggtatgaca ccgccgaaca      4200
     ggtagccgcc cggagacgac tagcctcctg ccagaggcta atcctgcttg gatgcctttc      4260
     ggtatgccga acagtgtcca cagtggcact gcaggtactt ggcggagctc ccccgcttga      4320
     cttggctgct aagtttttag cggtcaagta caagctgaag cgtggatacc cgctggagga      4380
     gaacgactgg ctatacggcg aggacactac gtgtctaagc tggaagcaga ggaagactcg      4440
     cctagaggag tgcttgctgc agaattggca aaacagatgg gatgacgaca gcgaaccagg      4500
     acgggtgacg cacaagttca tcccatacgt cactctcgcc tatcgagatc caagctttgg      4560
     attctcgatg aggacgtctt tcctgctgac aggtcacggg tcgtttaacg catttttgca      4620
     agggagagcc ctcagcgata ccactgcttg cgcttgtggt gatccatatg aggactggat      4680
     gcacatattg tgcgcttgtc ctctatatgc agatttgcga aacctcgatg gacttggagt      4740
     gcagcgcctt ggcgaaaact ggaccttcaa tagaatcctg gaagatcagc agaggattca      4800
     acggctggca gcgtttgcgg acgaggtgtt ccgtaggagg aggggtattt agcccaaaac      4860
     ttcgccgtgt ggttagcggg cgagaatact tccacagccc gctattgctt gtcgtaagag      4920
     gcgactaata tagcgactgg ttcctctaac catgcttgtc ggagcaaaag gaggaggccc      4980
     accgagcctc tctttcggta ccacgggttg tgctgctcca agacagcaca ttgaggtagg      5040
     ccccctggtg ggagtatcgt ggtggctgtg gttgataccc atatcgcggg tagagccttc      5100
     gtgttcgacg tttgagttac ggtgctagtt gcgcaaaact cgggtgctgt gacccagaga      5160
     tcagtagaga ttttaggtag atctcgctcc tcagcaaggg ggagtgcttg cccggcaagc      5220
     aagtactcga attgctaccg gggtggtcgc tatgtacata gctatagctt ccagtccggg      5280
     acgtttgtct ggcgtatcca gactcatgca ccatgttgat acatgcacca cttgtgggtg      5340
     ttcagggtgt cgtggttgta atcccttcag tgtggaacac gccacgtaaa acaagttcgg      5400
     agaggtccga aagtcac                                                     5417
//
ID   R1_DSi      repbase;    DNA;    INV; 5434 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   simulans.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5434
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           293..1804
FT                 /product="R1_DSi_1p"
FT                 /translation="CYQTLPMGGARVPEQLPFVSEQTSIRLLALTVGGATI
FT                 VVMPMESDSSASALSGSSASRKSKRGRRRSHLAPGSAPTQAKLVALASNGV
FT                 PEPVGVLKEPFSSLEDARAATANAAIDAAPPPHAAATAVDPTAAPAAAPAA
FT                 DHTAVSAVSTAAKIVATTATAATAAARAGQAAMMAKLSATQRMVRSSFRRL
FT                 GEVDTEELSYAISRYDELVLALMLRCGELETRLAMPPPPPPSSNPLKNTAA
FT                 NAPQMQQVAPTAAPRTTKVRETWSAVVKCDDPALSGKAIAEKVRTMVAPSL
FT                 GVRVHEVRELRRGGGAIIRTPSVGELQKVVASKRFTEVGLNVARNAAEKPK
FT                 VVVYDVDTAIGPEEFMKELHENNFDSEINLSQFKKSVHLVTKAWSVADGAT
FT                 VNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHTVSEC
FT                 RQKDSVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSSVCPIYGAL
FT                 LARVQARH"
FT   CDS           1801..4863
FT                 /product="R1_DSi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQE
FT                 PYLGGDGMDVLPEGMRIFIDRRGKAAILVDHQEAICMPVETLTTDYGVCLV
FT                 VKGSFGSIFLCAAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSP
FT                 MWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNHRATSD
FT                 IDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARAVESIAPVPS
FT                 WNFSNARWRLFKEEMVSRTAELPENFSESPLDQQVSTLRSIVHNVCDIALG
FT                 RKSIRSPNRRARWWTADLCDARREVRRLRRLLQDGRRRDDGAAIERVVAEL
FT                 RRASANYKKLIWRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLR
FT                 VNGEMITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDACVAR
FT                 LKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVV
FT                 SLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGF
FT                 RQGRCVEDAWRHVKSSVGASPAQYVLGTFVDFKGAFDNVEWSAALRRLADL
FT                 GCREMGLWQSFFSGRRAVIRSSSGTVDVPVTRGCPQGSISGPFIWDILMDV
FT                 LLQRLQPYCQLSAYADDLLLLVEGNSRAMLEEKGAQLMSIVEAWGAEVGVA
FT                 VSTSKTVIMLLKGALRRAPTVRFAGANLPYVRSCRYLGITVSEGMKFLTHI
FT                 ASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT
FT                 AXQVAARRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKFLAV
FT                 KYKLKRGYPLEENDWLYDEDTTCLSWKQRKTRLEECLLQNWQNRWDDDSEP
FT                 GRVTHKFIPYVTLAYRNPSFGFSMRTSYLLTGHGSFNAFLQGRALSDTTAC
FT                 ACGDPYEDWMHILCACPLYADLRNLDGLGVQRLGENWTFDRILKDQQRTQR
FT                 LAVFADEVFRRRRGV"
XX
SQ   Sequence 5434 BP; 1203 A; 1380 C; 1656 G; 1193 T; 2 other;
     cggacgtgtt ttcgttgcgc tcgtgtacag attgcgaaga acttggtttt ccgtgtttgg        60
     aaagtaataa aatcggtgaa ttagtgctcc gcgaaagtcg tgtgctaatt ttcgtgtgtt       120
     ataaacaagc ggtttggaag taattagcga ttaattattg caaattttcc attcagcacg       180
     tgctgcgagg cgagcttacg agtaagtttg tcgagtaagc tttttgatca gctgtcacaa       240
     agcttattgg tggcagtcac tgctaaggtt tgtgtctagg gagagttttt agtgctacca       300
     gactctaccg atgggtggag ctcgagttcc agagcaacta ccttttgtca gcgagcaaac       360
     gagcatacgg ttgctggcgt tgacggtagg tggagccacc atcgtagtta tgccgatgga       420
     gagcgacagc agcgcgagtg ccttgagcgg aagtagtgcc tcgaggaagt ccaaacgagg       480
     caggcgcaga agccacctgg cacctggctc ggcgccaacg caggcgaaat tggttgccct       540
     ggcatcgaat ggagtgccag aacccgttgg ggtactraag gagccgtttt cgtcgctgga       600
     ggacgcccgg gcggctacgg caaacgctgc catcgatgct gccccccccc cccacgctgc       660
     tgccaccgct gttgatccta ctgctgcccc tgctgctgcc cctgctgccg accacactgc       720
     tgtctccgcc gtttccactg ctgctaaaat tgttgccacc actgccactg ccgccaccgc       780
     tgccgcccgt gctgggcaag cagccatgat ggcaaagctg tcggccacac agcgcatggt       840
     gagaagcagc ttccgcagac taggagaagt ggacaccgaa gagctctcgt atgctatcag       900
     ccgctacgat gagctggtct tggcgttaat gctccggtgt ggagagctgg agacgcggct       960
     tgctatgccg ccaccgccgc cgccgtcgtc gaatccgttg aaaaatacgg ccgccaatgc      1020
     tccccagatg cagcaggttg cacccaccgc tgccccgcgg accaccaagg tccgcgagac      1080
     gtggtcagcg gtggtgaagt gcgacgaccc tgcgctatcg gggaaagcca tagcggaaaa      1140
     ggtgcgaacg atggttgcac cctctctcgg agtcagagta cacgaggtcc gtgagctccg      1200
     tcgaggtggt ggtgcgatca ttcgtactcc ttcggttgga gagctgcaga aggtggtagc      1260
     ttcaaaaaga ttcaccgagg ttgggctaaa tgtggcacgg aatgcggccg agaagccgaa      1320
     ggtcgtcgtc tatgacgtcg acacagctat cggccctgag gagtttatga aggagctcca      1380
     cgagaacaac ttcgacagcg aaattaatct gtcccagttt aagaagtccg tgcacctggt      1440
     gaccaaggcg tggtcggtag ctgacggcgc cacagtaaat gtgacgctag aggtagacga      1500
     ccgggcgatg gcgaagcttg atgtaggtcg tgtctacatc aagtggtttt cattccgatg      1560
     ccgatcacag gtccgcacat atgcctgcca cagatgcgtg ggtttcgacc acacggtcag      1620
     cgaatgccgg cagaaggaca gtgtctgccg tcagtgcggg caacaaggcc acactgcggc      1680
     aaagtgccaa aacccggtgg actgccggaa ctgccgccac agagggcaac cctcggggca      1740
     ttacatgctc tcgagcgttt gcccgatata cggggcgttg ctggcgaggg tgcaagctag      1800
     acactaatgt ttagcttcat ccaagcgaac tgtggccgag gccgagctgc gaccatcgag      1860
     ctcggagtcc gactcaggag atcggagtct atgttcgcgc tggtgcagga gccgtatctc      1920
     ggcggggacg gaatggatgt gctgcctgaa ggaatgagaa ttttcatcga tcggcgaggg      1980
     aaggcagcca tcctagtgga tcaccaggaa gccatctgta tgccagtgga gaccctcacc      2040
     acagattatg gcgtatgtct ggtcgttaaa gggagttttg gctccatctt cctttgcgcc      2100
     gcatactgcc agttcgatgc acctctggaa ccgtacctcc ggtacatgga tgcggtcctg      2160
     ctgcaggcca gcagaacccc cgcaatcctg ggcctcgacg cgaatgcagt gtcccccatg      2220
     tggcttagca aactctctcg tcatgccgag gggcaagcta actacagacg gggtgagctg      2280
     ctgtcagagt ggatgctgga ggcaagagtc gccgccctaa accagtcaac agaggtgtac      2340
     acgttcgata atcacagagc tacaagcgat atcgacgtga caatcgtcaa tgaggcagca      2400
     tctatgtggg ccacatatga gtggagagtg gacgagtggg aattgagtga ccacaacatc      2460
     attactgttg tggccgaacc aactaccgcg cgcgcagttg agagcatagc tcctgtgccg      2520
     tcctggaact tctccaatgc acgttggcga ttgttcaagg aggaaatggt gagtagaaca      2580
     gccgaacttc cggaaaactt ctcagagtcg ccgttggacc agcaagtttc gaccctgcgc      2640
     agtatagtac ataatgtatg tgatattgcg ctgggaagaa agtcaattcg atcgcccaac      2700
     aggagagcac gttggtggac tgccgacctc tgcgatgcaa ggcgcgaagt ccggagactt      2760
     cgtcgcctac tccaagatgg aaggcgtcgt gatgacggtg ccgctataga gcgtgtagtg      2820
     gccgagctga ggcgggcctc agccaactac aagaagctca tttggagggc gaaaatggat      2880
     gactggaaac gcttcgtggg agatcatgcc gacgacccat gggggcgcgt ctacaagatt      2940
     tgccgaggcc gcaggaagtg cacggagatt gggtgcctcc gcgtgaatgg cgagatgatc      3000
     actgattggg gtgactgtgc acgagtgctc ctccgcaatt tcttcccagt tgcggagtcc      3060
     gaagcaccga ctgccatcgc ggaggaagtc ccaccggccc tcgaagtatt cgaggttgat      3120
     gcatgtgttg cccggttgaa gagcaggcgc tctcccggct tggacggcat caatggcact      3180
     atctgcaagg cagtctggcg cgccataccc gagcaccttg catcgttgtt ttcccgatgc      3240
     atccgattag gatattttcc cgccgaatgg aagtgcccac gagttgtctc gctgctcaaa      3300
     gggccagata aggacaagtg tgagccctcc tcatatagag gaatatgctt gctaccagtc      3360
     tttggtaagg tgctcgaggc catcatggtg aatcgtgtga gagaagttct tccggaaggc      3420
     tgcagatggc agtttggatt tcgccaagga cgatgtgtgg aggatgcttg gaggcacgtg      3480
     aagagcagtg ttggtgccag cccggcgcaa tacgtgctcg gcacattcgt ggacttcaaa      3540
     ggagcattcg acaacgtcga atggagtgct gcactccgcc gactagccga cttgggatgc      3600
     cgggagatgg gcttgtggca gagctttttc tccggccgaa gagcagtgat ccgaagcagt      3660
     tccggtactg tggatgtacc ggtaactaga ggctgcccgc agggatcaat cagtggccca      3720
     tttatctggg acatactgat ggatgtactg cttcagcgtc tccagccgta ttgccagctg      3780
     agtgcatacg cggatgactt gctgcttctc gtcgagggaa attcccgagc tatgctagag      3840
     gaaaaaggtg cacagctgat gtccatcgta gaagcgtggg gagcggaagt tggcgttgcc      3900
     gtctcgacca gcaagacggt aataatgctg ctgaaaggtg ccttgagacg tgcgcctacg      3960
     gtgaggtttg ctggagcgaa ccttccgtat gtgcgtagct gtcggtacct tggcatcacg      4020
     gtcagtgaag gaatgaaatt cctcacgcac atagcttcgc ttcgccagcg gatgaccgga      4080
     gtcgttggag cattggcgcg tgtgcttcga gccgactggg gcttcagtcc tcgagccagg      4140
     cggaccatat atgacggact catggcacct tgtgtgctgt ttggtgcccc ggtatggtat      4200
     gacaccgccg adcaagtagc cgcccggaga agactagcct cctgccagag gctaatcctg      4260
     cttggatgcc tttcggtgtg ccgaactgtg tccacagtgg cactgcaggt acttggtgga      4320
     gctcccccgc ttgacttggc tgctaagttt ctagcggtca aatacaagct gaagcgtgga      4380
     tacccgctgg aggagaacga ctggctatac gacgaggaca ctacgtgtct aagctggaag      4440
     cagaggaaga cgcgcctaga agagtgctta ctgcagaatt ggcagaatag atgggatgac      4500
     gacagcgagc caggacgggt gacgcataag ttcatcccat acgtcactct tgcctatcgg      4560
     aatccaagct ttggattctc gatgaggacg tcttacctgc tgacaggtca cgggtcgttt      4620
     aacgcatttt tgcaagggag agccctcagc gataccactg cttgcgcttg tggagatcca      4680
     tatgaggatt ggatgcacat attgtgcgct tgccccctat atgcagattt gcggaacctc      4740
     gatggacttg gagtgcagcg ccttggcgaa aactggacct tcgatagaat cctgaaagat      4800
     caacagagga ctcaacggct ggcagtgttt gcggacgaag tgttccgtag gaggaggggt      4860
     gtttagccca acaacttcgc cgtgtggtta gcgggcgaga atacttccac agcccgctat      4920
     tgcttgtcgt aagaggcgac taatatagcg ataggttcct ctaaccgtgc ttgtcggagc      4980
     aaaaggagga ggcccaccga gcctctcttt cggtaccacg ggttgtgcag ctatccaaga      5040
     ctgcacattg aggtaggccc cctggtggga gtatcgtggt ggctgtggtt ggtacccata      5100
     tcgcgggtag agccttcgtg ttcgacgttt gagttgcggt gctggttgcg caaaactcgg      5160
     gtgctgtgac ccagagatca gtagagattt taggtagatc tcgctcctca gcaaggggga      5220
     gtgcttgccc ggcaagcaag tactcgaatt gctaccgggg tggtcgctat gtacatagct      5280
     atagcttcca gtccgggacg cttgtctggc gtatccagac tcatgcacca tgttgataca      5340
     tgcaccacta gtgggtgttc agggtgtcgt ggttgtaatc ccttcagtgt ggaacacgcc      5400
     acgtaaaaca agttcggaga ggtccgaaag tcac                                  5434
//
ID   R1_DVi      repbase;    DNA;    INV; 5248 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   virilis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DVi.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-5248
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           248..1648
FT                 /product="R1_DVi_1p"
FT                 /translation="ISAHLRTMPPRKKKPAEKGAFENCRMTSEDEVTLSES
FT                 SSNSEVRRRSKQRLRKATSESAVSSVGAREGSAVPAGAADGSPGAAGASVE
FT                 ERVFAVPHAVSVLDVSEPAVEGPSTSAAALRKRKGTAVEQMKGITGALLQL
FT                 ALKERATGSLICKLVDYTGQYEQLLFALVAQNERLQGRLEAVCGGAGVSHE
FT                 LHVPAGQARAPSVNAARGGPRSAVPSTPEMPRPVETWSLVVRSKAAGKTAK
FT                 DVVEQVVKEVGPSLGVRIHEVKPLRDGGALIRTPSVAEREKIVENTKFNEV
FT                 GLEVCVNDKLGPKVVVQGVHSQITPDEFMGDLYEMNLKDKMSLEAFKKGVR
FT                 MTSKPWAAGGNVAVNIVLEGAVVAMQSLLEIGRCYIKWFSFRVRSFDLVPG
FT                 CYRCLGFDHKVAECRAKEDVCRRCGQMGHRVAQCSNALNCRNCSFKGKPSG
FT                 HLMMSLACPIYGAIVARANARH"
FT   CDS           1602..4724
FT                 /product="R1_DVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="PVPYTGRLLRGRMLDIKMSSRFLQLNCQRSYAAMCDV
FT                 GAMMCERGSVVALLQEPYATGGCVRGLPACMRVFPDSRANSAVIVNDVSIE
FT                 CTLVSSTDWGVCVSLSGSFGRIFVVSMYCKFGDPLEPYIAYLDEVLLLVSS
FT                 VPVILGLDANASSPMWFSKVSRHSSGYSNHTRGEMLAEWAVSQDVRVVNEP
FT                 SEWYTFAGPVGQSDIDVTLVNAVAMSMYAFHWCVLGGLGVSDHNPIEIVVT
FT                 HTITRNESVGGNRWRTCSVNWSLHGLIVQEAATQVPLNAFNDLNVDEQVVC
FT                 VNGWITGANDRMFERYRKVNLKHVKWWTNQLSTKRRMVRSLRKRFQRARAT
FT                 NADGAAQLRIEYSRCMNEYKQMLVKVKEDEWRSFLERNKDDPWGRVYKIVR
FT                 GRGRETDVSSLRVGNVQLTAWRDCMNVLLNEFFPRADHQDSPPSVVRPVDP
FT                 LLDSELEVAFSRLKSRKSPGMDGFTGEMCKSVWKSIPEYMNAMYAKCLNEG
FT                 YFPSEWKCARVIVLLKSPDRIRSNPRSFRGISLLPVLGKVLERIMVERLQE
FT                 RMXDQMSDRQFGFRQGRCVEDAWRYVSDSVEASSSTYVLGIFVDFKGAFDY
FT                 LSWASVLRRLDECGCRELALWKSYFSGRRACAVGRCECVSVNVVRGCPQGS
FT                 ICGPFIWNLMMDPLLVQLEQMCKCCAYADDLLILIEGRSRLEIETNAGMCL
FT                 RTVYEWGESVGVSLAMDKTVSMLLKGRLAASRPPIVRLNGVNVRYASEVKY
FT                 LGITFGERMCFTPHIAGLKARLLGLVGQVRRILRSDWGLSRRAVRTIYEGL
FT                 FVACAAYGSSVWCKAVTTVVGRKKVLACQRVLLLGCLPVCRTVSTEAMQVL
FT                 LGVAPLDLEIRRRALMYRIKRRLPLLQNDWLAGRDVESLGLSECKRLVKEC
FT                 VLSDWQVRWDTSVNGRVTHRFIREVTFAGSRPDFGFGLSLGFLLTGHGSLN
FT                 AFLHSRNLYDSPECRCGSAAETWEHVLCECTRYADFRDLRGMGISEVSGGF
FT                 DVSQSLSTSDRVRRMSEFARAAFSRRRLQLQEGIV"
XX
SQ   Sequence 5248 BP; 1167 A; 1015 C; 1679 G; 1386 T; 1 other;
     cagttcgttt cagacagtcg ttgggaacag acgtgtttat ttcatcgctc gcttcgcaaa        60
     caattttaag ataacggtgc tttcaagcaa cggtatcttg tttacatttt gtgcgcttat       120
     cagcaataaa gttttattgc tttgtttacg tcgttgctgc gtgagcaaca ggcgttcgtg       180
     tgtgtgtgtg aaaccgccag cttctacgtg tgtgtgtgtg tgtgcgtgct atttatatat       240
     taaatagata agcgcacacc tgcggacgat gccgccacgc aaaaagaagc ccgctgagaa       300
     gggggctttt gaaaattgta ggatgacgtc ggaagatgag gtgaccttgt cggagtcgtc       360
     atcgaacagc gaggtaaggc ggaggagcaa gcagcgcctg aggaaggcaa cttccgaaag       420
     cgctgtcagc tcagttggtg cgcgtgaggg gagcgctgtt cccgcgggag ccgcagatgg       480
     ctcgcccgga gcagcgggtg caagtgtgga ggagcgggtt tttgccgttc ctcatgccgt       540
     gagcgttttg gatgtgtctg aacctgccgt ggaggggccg tcgacaagtg cggcggcttt       600
     gaggaagcgg aaaggaacag ctgtcgagca gatgaagggg ataacgggag ctttattgca       660
     gcttgcactc aaggagagag ccacggggtc gctcatttgc aagttagtcg attatacagg       720
     gcagtatgag cagctcctgt tcgcgcttgt ggcgcagaat gagcggctgc aggggcgctt       780
     ggaggccgtt tgcgggggtg caggcgtttc gcatgaattg catgttccag ccggccaagc       840
     gcgggctccg tcggtgaacg ccgccagagg gggtcccagg tcggcagtgc cgtctacccc       900
     ggagatgcct cggccagttg agacatggtc cttggttgtg cgcagcaagg ctgctggcaa       960
     aaccgctaag gacgtggtgg agcaggtggt gaaggaggta ggtccctctc ttggtgtgcg      1020
     gatacatgag gtgaaacctc taagggatgg aggtgcgtta attcggactc catcggtcgc      1080
     cgagcgtgag aaaattgtgg agaacacaaa gttcaacgag gtgggattgg aagtgtgtgt      1140
     gaatgataaa ttagggccga aagttgtggt tcagggcgtt cactcgcaga tcacccctga      1200
     cgagttcatg ggtgaccttt acgagatgaa cttaaaggac aaaatgtcac ttgaagcctt      1260
     taagaaaggt gtccggatga caagtaagcc atgggcggcg ggaggtaatg tagcagttaa      1320
     tatcgtcctc gagggtgctg tggtggccat gcagtccctt ttagaaatcg gacgctgcta      1380
     cataaaatgg ttttctttta gagtgagaag ttttgacctg gtaccgggat gctaccgctg      1440
     ccttggcttc gaccataagg tggcggagtg cagagccaaa gaggacgttt gccgtcgctg      1500
     cggccagatg ggtcaccgcg tggctcagtg cagcaatgca ctgaattgcc gcaattgctc      1560
     ctttaagggg aagccgtcgg gacatctgat gatgtctcta gcctgtccca tatacggggc      1620
     gattgttgcg cgggcgaatg ctagacatta aaatgtctag cagatttctt cagctgaatt      1680
     gtcaaaggtc gtatgcagct atgtgtgatg tgggggctat gatgtgtgaa aggggcagcg      1740
     tcgttgccct gctgcaggaa ccctacgcga ccggtggttg cgtaagggga ttgcccgcat      1800
     gtatgcgagt attccctgac agcagggcta actccgctgt cattgtgaat gatgtcagta      1860
     ttgaatgcac tttggtgagt tcaactgact ggggggtgtg tgtgagccta agcggcagtt      1920
     ttggcaggat ttttgtagtg agcatgtatt gtaagttcgg ggatcccctc gaaccataca      1980
     ttgcttactt ggatgaggtg ctactactgg ttagtagcgt accagtcatc cttggtcttg      2040
     atgcgaatgc atcatccccc atgtggttca gcaaggtatc cagacattcg tctgggtatt      2100
     cgaaccacac acggggtgag atgctagccg agtgggccgt gtcccaggat gttcgggtcg      2160
     ttaacgaacc cagtgagtgg tatacgtttg cgggtccggt gggtcagagt gacattgatg      2220
     ttactctagt gaatgcggtg gcaatgagta tgtatgcttt tcattggtgt gtactaggtg      2280
     ggcttggtgt gagtgaccac aatccgattg agattgttgt cacacacact attacgagga      2340
     acgaaagtgt tgggggtaat cgctggcgca cttgtagtgt gaattggtcc cttcatgggc      2400
     tcattgtgca ggaggcggca acgcaagttc cgcttaatgc atttaatgat ttgaatgtgg      2460
     atgagcaggt cgtatgtgtg aatgggtgga taactggtgc gaatgatcgc atgtttgaga      2520
     ggtaccgtaa ggtcaacctt aagcatgtga agtggtggac gaatcagtta agcaccaagc      2580
     ggcggatggt ccggtctctg cggaagcgat tccaaagggc cagagctacc aatgcggatg      2640
     gtgcagccca actcaggatt gaatatagtc ggtgtatgaa tgagtacaag caaatgcttg      2700
     taaaggtgaa agaagatgaa tggcgctctt tcctggagcg caataaggat gacccctggg      2760
     gtcgtgttta taaaatagtt cgaggtagag gcagggaaac ggatgtaagt agcctccgtg      2820
     ttggtaacgt tcagttaacg gcatggaggg attgcatgaa tgtcttgttg aatgaattct      2880
     tccccagagc ggatcatcag gactcaccac ctagtgtggt taggcctgtt gatccgcttc      2940
     tggatagtga gttggaggtg gctttctcga ggttaaagtc gaggaagtca cctggtatgg      3000
     atggattcac tggagaaatg tgtaaaagtg tctggaagtc aattccagag tatatgaatg      3060
     cgatgtatgc gaagtgtctg aatgagggtt atttccccag tgaatggaag tgtgcgagag      3120
     tgatagtgct cctgaagtcg cctgacagga tcaggagcaa tcctagatct tttcggggca      3180
     tcagtcttct tccggttctt ggaaaagttc tggaaaggat tatggtagaa aggcttcagg      3240
     agagaatgar tgaccaaatg tctgacaggc aatttggttt taggcagggc agatgtgttg      3300
     aggatgcttg gaggtatgtt agtgactctg ttgaggctag cagctccacg tatgtcttgg      3360
     gcatctttgt tgattttaaa ggtgctttcg actacctgag ttgggcgagt gttttgagaa      3420
     ggttggatga atgcgggtgc cgagaattag ctctctggaa gagctatttc tctggcagac      3480
     gtgcgtgtgc tgtagggcgg tgtgaatgtg tgagcgtaaa tgtggttcgt ggctgtccgc      3540
     agggatctat ctgtggccca ttcatttgga acctcatgat ggaccccttg ctggtgcagc      3600
     ttgagcagat gtgtaaatgt tgtgcgtatg cggacgatct gctcatcttg attgagggtc      3660
     ggtcgcgtct tgagatcgag acgaatgcgg gtatgtgctt gcgcactgtg tatgagtggg      3720
     gtgaaagtgt tggggtcagt cttgcaatgg acaagacagt gtcaatgctg ctcaagggca      3780
     gattggcagc tagtcggcca cccattgtca gactgaatgg agtgaatgtg aggtatgcgt      3840
     ctgaggtgaa atatctcggc ataaccttcg gcgagaggat gtgtttcact cctcatatcg      3900
     ctggtctcaa ggcccggcta cttggtttgg tggggcaagt gcgtcgtatt ttgaggtctg      3960
     actggggcct aagcagacgt gctgtccgca ccatctatga gggtctgttt gttgcatgtg      4020
     cagcatatgg atcgtctgta tggtgcaagg cggtcacgac tgtggtcggc agaaagaaag      4080
     tgctggcttg ccagagagtg cttctgttag gttgtttgcc tgtgtgccgc actgtctcta      4140
     cggaggcaat gcaggtactg ttaggagtag cccctcttga cttggagatc aggcgtcgag      4200
     ccttgatgta caggatcaag aggcggctgc cattgctgca gaatgattgg ctagcgggta      4260
     gggatgtgga gagtttaggg cttagtgaat gcaagagatt ggtgaaagag tgtgttttgt      4320
     ctgactggca agtcagatgg gacactagcg tgaatgggcg tgtcactcat cggtttatac      4380
     gggaggttac atttgccggc agccgaccag actttgggtt cggcctgagt cttggattcc      4440
     tgttgactgg tcacggttcc ctcaatgcat tcttgcattc gaggaacctt tatgacagtc      4500
     cagaatgccg ttgtggctcg gctgctgaga catgggagca tgttctctgt gagtgcacaa      4560
     ggtatgcaga ttttcgagat ctgaggggga tgggtataag tgaggttagt ggcgggtttg      4620
     acgtaagtca atcactctcc actagtgata gggttagaag aatgagtgag tttgctagag      4680
     ctgcattttc caggcgacgt ttgcaattgc aggaaggaat tgtatgaatg atgatggatg      4740
     gtagatgtga gaatgtgggg gtacgaatgt gggggtgttt ctgaatggta atttttgttg      4800
     aacattgtgt tgtgatgggg ctaccaaccc ttaactgttt tggagtttaa attggaagtg      4860
     cccttctggt acgaggcctg accggaggct tttaatctgg taccacgggt aaccaggagc      4920
     ccacggaact tgttccgtcc tggttagttg gtgcggccct tcggggagta tcgtggtggt      4980
     tgtggtttaa cacccaaatg cgggtagagc atcgctcgac gtggagttgc gtcatacaac      5040
     cgggttccgt gacccagatt acggaagagg cttagatagt cctcgtgcca aaccaaggta      5100
     gaagtcacaa ccaaacagtc gtgtctttaa ttggtacctg cggaattgtt ccaagggggc      5160
     ggtgattgac gcttgaatta atcctatact aggaaccgtg agattaagcc atcgcggcag      5220
     gtgctcacgt taagcccact gactttca                                         5248
//
ID   R1_DWi      repbase;    DNA;    INV; 6120 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   willistoni.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-6120
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           364..1896
FT                 /product="R1_DWi_1p"
FT                 /translation="HEKIFYEFFRDTNYLCRDVVMDGSMKRSGSTISVMSA
FT                 SSVVESARSATSCVESAAESMNVTGSDTVDESGAEMTVVVGKREKKARKAK
FT                 ARSARSSPVLEQVAPVAKKPHLDSVSMPAPAAPPVKPAKRKAAAAAASPEA
FT                 VESPAAGPADMEIPRSGAWRIVAGGSSAILAEIGASGQAIRNAMIGMEPVA
FT                 ASQLSSAIRRLEELATSLTLRNALLEAAASKPAAQPPTTPVAAHIAAYNAA
FT                 FPAVTARAAAVVPVPGVPVAAPRISKPAETWSAVVTSRDPNVSSKQVAERV
FT                 MKEVAPTLGVRVHEVRELRSGGAVIRTPSVVEIQRVVANKKFAEVGLNVQQ
FT                 KKAARPSLKVMEVDTKLTPEVFMQQLYENNFKEMTVESFKKAVHMVSKPWV
FT                 AQEGKRVNVSIEVDDSIASLLEGRERFYIQWFSYRFRWIVRTHVCHRCAGY
FT                 DHKVAQCGATEATCFRCGQKGHKIWKCENPVDCRNCRFNGRPSGHLMLSLD
FT                 CPMFAAKEARFAANH"
FT   CDS           1893..5024
FT                 /product="R1_DWi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="SLTMFSFIQANCGRGRVACIDIGVRMRGFGHSFALLQ
FT                 EPHTDLDGRIIGFPAGMKIFGSRIFEGHRRNSAVIIDDPDAICLPVESLIT
FT                 EAGVCVRVTGKFGSIYLTSLYCHAHAELMGAFQYMDAILLLASSTPVILCL
FT                 DANAVSPMWFCKRYDSYRGQPNYRRGEQLEDWILASRAGVVNRFSEVYTFD
FT                 NRRGQSDIDVTIVSEAASAWAAYDWSVDEWEMSDHNIITVVVTPSPDTVES
FT                 TYAPVPSWKLRNANWRLFDSELVEEIREHLPLEHIRMSPLDSSVSALRLAV
FT                 QSTCDRVLGRRTSRAAGKVKWWSTELSTKRHEVRRLRRRLQDARRRGNESA
FT                 QFLATHLRTAVREFKKLILKTKEDHWRNFVGDHRDDPWGHAYKICRGRKRS
FT                 TELGCLREDGRPVVTWHDCASLLLRNFFPVAAASDDIVIPSGATPVLEAFE
FT                 IGVCVARLKSRRSPGLDGITGGICKAVWRAIPEHITALLSRCVAEGYFPLE
FT                 WKCPRVVALLKGPDKERSDPASYRGICLLPVFGKVLEGIMVNRMKEVLPEG
FT                 NRWQFGFRPGRCVEDAWHHVKASVAASQAVYVLGLFVDFKGAFDNVEWSAV
FT                 MRRLIDAGCQEASLWRSFFSGRKARMTSRFGEVDVEVTRGCPQGSISGPFI
FT                 WNTMMDVLLQRLEPLCVFSAYADDLLVLVEGRSRAELERRGKELMSVVGAW
FT                 GAEVGVSISTSKTAMMLLKGRLAASRSPFVEFAGAGLRYVTQYRYLGITVG
FT                 ERLSFQPHIAGLRGKLAGVSGALSRVLRVDWGLSPRSRRTVYAGLMVPCAL
FT                 FGASVWYSAVKSTMVARRHLCSCQRVMLLGCLPVCRTVSTVALQVLAGAPP
FT                 LDLVARQLAIRYKVKHSHPLEEGDWLFGLDVANLDRKQMKAMLDERMCCEW
FT                 QRRWDDDEHGRPTHEFIPDACFVFSRKDFGFGLHAGFLLTGHGSLNAFLYE
FT                 RSLSRTPTCQCGALCEDWQHVLVACPLYTDLRDLDGLGVRREDTRWDFSRV
FT                 LDTPEQLQMLELFARAAFKRRRRMTQDQPVPGRTGQNW"
XX
SQ   Sequence 6120 BP; 1372 A; 1490 C; 1895 G; 1363 T; 0 other;
     cagtcttgtt tggactgtcg ttgcgtgcgg ttgtgtcgcg gtcgtttgat ttacgaatct        60
     tgaacgcaaa acagattgca taagtgcaaa acagagacac cgattgaaac ggtgaagtgc       120
     tcacttgtcg taaacaagtg gattagtgtg ccaagcaacg gtaacttgtt taccagttga       180
     gactgtgcgt gtgagtgaca gtgcgagtgt gtgtgtgagc acgtgctcaa gtacagtgga       240
     cactcgagaa gagtgctagt acagtgcgcc ctcgctaaaa gggccaagtg cggttttcgg       300
     cgtgcgtgat cggactcgtg cgtgagccga ttgttcgtgc gtgagccgat agttcgtgcg       360
     tgacacgaaa aaatttttta cgaatttttt cgtgacacga actatttgtg tagagacgtt       420
     gtcatggacg gatccatgaa acgcagtgga agcaccatca gcgtgatgag cgcttccagc       480
     gttgttgaaa gcgcccgcag cgctacgtcg tgtgttgagt cggccgcgga gtcgatgaat       540
     gtcactggta gtgacaccgt tgatgagtcg ggcgccgaga tgacggtcgt cgtcggtaag       600
     cgggagaaga aggcgcggaa agcgaaggct cgctcggctc gttcgtcgcc ggtgctggag       660
     caagtcgccc ccgtcgcgaa aaagccgcat ctggacagcg tgtccatgcc cgcccccgcc       720
     gcgccccccg tgaagccagc caaacgtaag gctgccgccg ctgctgcttc tcctgaagct       780
     gtcgaaagtc cagccgctgg accagccgat atggagatac cgcgaagcgg agcgtggcga       840
     attgtcgccg gtggctcgtc tgcgattctc gcagagattg gcgcctcagg gcaagccatt       900
     agaaatgcca tgattggcat ggagccagta gctgcatcgc agctatcgtc tgctatcaga       960
     cgcttggagg agttggcgac atcgctgacc ctcaggaacg ctctgttgga agcggcagcg      1020
     agcaaacctg ctgcacagcc gcccaccacc cctgttgctg cgcatattgc tgcgtacaat      1080
     gctgccttcc ccgcggtcac cgccagagct gctgccgttg tccccgtccc cggagtgccg      1140
     gtcgccgcgc cacggatcag caagccagct gagacgtggt ccgcggtggt cacgagtcgg      1200
     gacccgaacg tgtccagcaa gcaagtggcc gagcgggtga tgaaggaggt cgcaccgacg      1260
     ctgggagtgc gtgtacatga agtacgcgaa ctcaggagcg gaggcgctgt cattcgaaca      1320
     ccgtcggttg tcgaaataca gcgggtggta gcgaataaga agttcgcaga agttggactg      1380
     aatgtccaac agaagaaggc ggcaagacct tccctgaagg tgatggaggt tgacaccaag      1440
     ctcaccccgg aggtcttcat gcagcagctc tacgaaaaca acttcaaaga gatgacggta      1500
     gagtccttta aaaaggcagt gcacatggtg tcaaagccat gggtcgcgca agaaggcaag      1560
     agagtgaacg tctccatcga ggtagacgac tcgattgcgt ccttgctgga aggccgtgag      1620
     aggttctaca ttcagtggtt cagctacagg ttccgctgga tcgtaaggac ccacgtatgc      1680
     cacagatgcg caggctacga ccataaggtg gcccagtgtg gtgcaacaga ggcgacatgc      1740
     ttccgatgtg gtcagaaggg ccacaagatc tggaagtgcg aaaatccggt ggactgccgg      1800
     aattgtcgct ttaatggaag gccatcgggg catttaatgc tctcgttgga ctgtccaatg      1860
     ttcgctgcga aggaggcaag gtttgctgct aatcattaac catgtttagc ttcatccaag      1920
     ccaattgtgg tcggggtcgc gttgcgtgca tcgatatcgg tgtgcgtatg cgtggtttcg      1980
     gccactcctt tgcgttgctg caggagcccc acacagactt ggatggccga ataattggat      2040
     tcccagccgg gatgaaaatt ttcggtagtc gaatcttcga gggacaccga aggaactctg      2100
     ccgtcatcat cgacgatcca gatgccatct gcctaccggt cgagtcgcta atcaccgagg      2160
     ctggagtatg cgtgagggtc acgggtaaat ttggctctat ttacctgacc tcactttact      2220
     gccatgcaca tgctgagttg atgggcgctt tccagtacat ggatgccata ctgctactgg      2280
     cgagcagtac tccggtcatc ctctgcctag atgcgaacgc tgtatccccg atgtggttct      2340
     gtaaacgcta cgatagctat cgtggccagc cgaactacag acggggtgag cagctagagg      2400
     attggattct cgcaagccga gccggagtcg tcaacagatt cagcgaggtg tacacgttcg      2460
     ataatcgccg tggacagagc gatattgacg taacaatcgt tagcgaagca gcgtctgcgt      2520
     gggccgcgta tgactggagt gtggacgagt gggagatgag cgaccacaac attatcactg      2580
     ttgtagtgac gccttcccca gacacagttg agagcacata tgctcctgtg ccgtcctgga      2640
     agctcaggaa tgctaactgg cggttgttcg actctgaact ggtagaggaa attcgggagc      2700
     accttccgtt ggagcacatc aggatgtcgc cgttggactc ctcggtgtct gcgctacgcc      2760
     ttgccgtaca gtctacgtgc gacagggtgc taggtcgcag aacgtcgcga gccgctggaa      2820
     aggtgaagtg gtggtccact gagctgagta caaaacgtca tgaagtcagg agacttaggc      2880
     ggaggctcca ggatgctagg cgcagaggga acgaatctgc gcagtttctt gcaactcatc      2940
     tgcggacggc ggtccgcgag ttcaagaagc tcatcctgaa gacgaaggag gaccattggc      3000
     ggaacttcgt tggagaccac agagatgacc catgggggca tgcgtacaag atttgccgag      3060
     gacgaaagcg gtccacagag ttgggatgcc ttcgcgagga tggcaggccg gtcgtaacct      3120
     ggcacgactg cgcgagtctc ctcctccgta acttcttccc agttgcggca gcgagtgacg      3180
     acattgtcat tccaagcgga gctacaccgg ttctcgaagc cttcgagatc ggagtatgcg      3240
     tcgcccggtt gaagagcagg cgctctcccg gattggacgg catcacaggt ggtatctgca      3300
     aggcagtatg gcgtgctatc cccgagcaca taacagcgtt gttatctcgc tgtgtggcag      3360
     agggatattt tccccttgag tggaaatgcc cgagagtagt ggcgctcctc aagggccccg      3420
     ataaggaaag gagtgatcca gcttcctatc ggggcatctg cctgctgcca gtgtttggca      3480
     aggtgctaga ggggatcatg gtgaatcgga tgaaagaggt gcttccggaa ggaaatagat      3540
     ggcaattcgg ctttcgacct ggacgctgtg ttgaggatgc ctggcaccac gtaaaggcca      3600
     gcgttgccgc cagccaggcg gtatacgtgt tgggtctttt cgtggatttc aagggtgcct      3660
     tcgacaacgt tgagtggagc gctgtgatgc gccgcttgat cgacgcggga tgccaggaag      3720
     ccagcttatg gagaagcttc ttcagtggca gaaaagcgag gatgaccagc agattcggag      3780
     aggttgacgt ggaggtcact cgaggatgtc cgcagggatc catcagtgga ccatttattt      3840
     ggaacactat gatggatgtg ctgctccaac gtttggagcc cctgtgtgta ttcagtgcgt      3900
     atgcagacga tctgctggtc ctcgtcgagg gaaggtcgag agccgagctg gaacgtcgtg      3960
     gaaaggagct gatgtccgtc gtgggagcct ggggagctga agtcggagtt tcgatttcga      4020
     ccagcaagac ggcaatgatg ttacttaaag ggagattggc cgcttctagg tcaccctttg      4080
     tagagtttgc aggagcaggc ctacggtatg taactcaata ccgatacctg ggcatcacag      4140
     tcggcgagcg gcttagtttt cagccgcaca tcgcaggatt acgcggtaag ttggctggag      4200
     tcagtggtgc actcagtcgc gttctgaggg ttgactgggg tctcagtccc cgatccagac      4260
     gcactgtgta tgctggactc atggtgcctt gtgcgctatt tggtgcctca gtgtggtatt      4320
     ccgcggttaa gagtacgatg gtcgccagga ggcacctctg ctcttgccag agagtcatgc      4380
     tcttgggatg cctgccggta tgccgtacag tgtccactgt ggcactgcag gtgcttgctg      4440
     gagccccccc cttggacttg gttgccaggc aactggcgat taggtacaag gtgaagcatt      4500
     cccacccgtt ggaggaaggc gattggctgt tcggtctgga tgtggcaaat ctggatcgga      4560
     agcagatgaa ggcgatgctg gatgaacgta tgtgctgcga gtggcaacgc aggtgggatg      4620
     acgatgagca cggtcgaccg actcatgagt ttatcccgga cgcatgcttc gtcttcagcc      4680
     ggaaggactt tggttttgga cttcacgctg gattcttgct gactggccat ggatcgctga      4740
     atgcattcct gtatgagaga agtctgagta ggacgcccac atgtcaatgt ggtgcgcttt      4800
     gcgaagactg gcagcacgtg ctagtggctt gcccactcta cacagatttg cgagacctcg      4860
     atggacttgg tgttagaagg gaggataccc gttgggactt ttcccgggtc ctggacacac      4920
     cggagcagct ccagatgttg gaattgtttg cgcgagcggc atttaaaagg cggcgacgaa      4980
     tgacacagga tcaaccagtg ccgggtcgga cgggccaaaa ctggtagcag tagctcacac      5040
     acactgcaaa gccgtaccag agcgctttaa tctggcagat gaacccccat cggggtgact      5100
     cggggatgat ccattccttg ttcaggtgaa caaaaatggc tagtagtttc gactgcgaac      5160
     agcccgccaa agctgcaaat ctggtagacg aaccccatga ggggggagtt gaggatgatc      5220
     cattccctgt tcgtgttgaa caaaaatggc tagtagtctc tgactgcgaa cagcccgcca      5280
     aagctgcaat ctggtagacg aaccccatga ggggggagtt gaggatgatc cattccatgt      5340
     tcgtgttgaa ctaaaatggc tagtagtttc gactgcgaac agcccgccaa agctgcaaat      5400
     ctggtagacg aaccccatga ggggcgagtc ggggatgatc cattccctgt tcgtgctgaa      5460
     cagaaatggc tagtagtttc gactgcgaac agcccgccaa agctgcaaat ctggtagaca      5520
     aaccccatga ggggcgagtc ggggatgatc cattccatgt tcgtgttgaa ctaaaatggc      5580
     tagtagtctc tgactgcgaa cagcccgcca aagctgcaaa tctggtagac gaaccctagt      5640
     tggggggagt cgaggacgat ccattccgtg ttgtcgagga cacatatggc tagtagtttc      5700
     gactgcgaac agccgaccga agctgtgatt cggtactacg ggatgggcta gtggcccaag      5760
     gctagcccaa ttagtggttg gcccccttgt gggagatcgt agtggctgtg gtttgatacc      5820
     caaatgcggg gagagtcatt ggactcagcg tggagttgcg ttacacaacc gggtgctgta      5880
     cccatagacc agcagaggtt ttagatgggc ctcgctcctt acccaggggg agtgtcatgt      5940
     ccgacagcat ggcattcaat aggcactgac gagatgctgc aatagcagta tctccgaagg      6000
     gcgttggttg acgcattgtt ttgacccgct gtactatatg tcacaagtgt ggcatattag      6060
     agtaccgtgg ttgtaaaccc tattaatggg tacacgtcac gttaaataaa ctcgacttca      6120
//
ID   R1_DYa      repbase;    DNA;    INV; 5513 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R1 in Drosophila
DE   yakuba.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5513
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..1904
FT                 /product="R1_DYa_1p"
FT                 /translation="VELVHQSNQLVTVSAQFPELPEGGATIVVSPMESDSS
FT                 ASAASAASASSASRKPGRGRRRSHQASKSSAATQAKLVAVASRGVPEPVGA
FT                 LDEAPSSLEDPRMVPAATTAATTAATAAATAAATAAAPAAAPAAAPAAAPA
FT                 AAPAAAPAAAPAAAPAAAPVAAPVATPAVATATVASAAARAGQAAMMAELS
FT                 ATQRMVRSSFRSLGGVDTDELSFAISRYDELVMALMLRCGELETRLAMPPP
FT                 PPPSMPTSASSRFPQMPQAAPIAAPRTTKVRETWSAVVKCDDPALSGKAIA
FT                 EKVRTMVAPSLGVRVHEVRELRRGGGAVIRTPSVGELQKLVSSKKFAEVGL
FT                 NVARNAAEKPKVVVYDVDTAIGPEEFMQELHENNFDGEMTASEFKRSVHLV
FT                 TKAWSVTDGATVNVTLEVSDKAMAKLDVGRVYIKWFSFRCRSQVRTYACHR
FT                 CVGFDHKVSECRQKTNVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYM
FT                 LSDVCPIYGAVLARVQARH"
FT   CDS           1901..4963
FT                 /product="R1_DYa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="TLMFSLIQANCGRGRAATIELGVRLRRSGSMFALVQE
FT                 PYLSGEGMDVLPEGMRIFTDRRGKAAILVDLQDAICMPVETLTTDYGVCLV
FT                 VKGSFGSIFLCSAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSP
FT                 MWFSKLSRHAEGQANYSRGELLSEWMLEARAAALNQPTQVYTFDNYRARSD
FT                 IDVTIVNEAASMWATYEWRVDEWELSDHNIITVVTEPSTTSAVESIAPVPS
FT                 WNFSNARWRLFKEEMVSRTAELPENFSESPLDQQVSTLRSIVHNVCDIALG
FT                 RKSIRPPSRRARWWTADLCAARREVRRLRRRLQDARRHDDDAAAELLVVGL
FT                 RRASANYKKLIGRAKMXDWKRFVGENADDPWGRVYKICRGRRKCTEIGCLR
FT                 VNGELITDWGDCARVLLRNFFPVAESDAPIAIVEEVPPALESHEVEACIAR
FT                 LKSKRSPGLDGINGAICKAVWRAIPQHLASLYSRCIQSGYFPNEWKCPRVV
FT                 ALLKGPEKDKCEPSSYRGICLLPVFGKVLEAIMVNRAREVFPEGCRWQFGF
FT                 RQGRCVEDAWRHVKSSVDASPAQYVLGTFVDFKGAFDNVEWSAALRRLADL
FT                 GCREMSLWQSFFSGRRAVIRSSSGAVDVPVTRGCPQGSISGPFIWDTLMDV
FT                 LLQRLEPYCLLSAYADDLLLLVEGNSRVVLEEKGAQLMSIVETWGAEVGVA
FT                 VSTNKTVIMLLKGTLRRAPTVRFAGANLPYVRTCRYLGITVSEGMKFLTHI
FT                 ASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT
FT                 AGQVAAKRRLASCQRLILLGCLSACRTVSTVALQVLGGAPPLDLAAKQLAV
FT                 NYKLKRGYPLEENDWLYGEDIACLSWEQRKTRLEECMLRSWQNRWDDDSEP
FT                 GRVTHRFIPDVTLVYRDPNFGFSMKASFLLTGHGSFNAFLHGRALSDTTAC
FT                 ACGDPYEDWMHVLCACPLYADLRDLDGLGVQRVGENWMFEGILEDRERTQR
FT                 LAAFAEEAFRRRRGL"
XX
SQ   Sequence 5513 BP; 1167 A; 1442 C; 1703 G; 1200 T; 1 other;
     cggacgtgtt ttcggtacgc tcgtgttcag attgcgaaaa gctaagtttt ctttgtaaaa        60
     caaagttcgg aaagtgaatt aatcggtggt tgagtgctcc gcggaaatag tgacattatt       120
     tacgcgaacg caaagcctgt gatttcggaa caattcgcaa taatttattg caaaattttc       180
     cactgagaac agcacgtggt tccaggcgag ctttcggaca gctgttaaac agctgggcct       240
     gtcggtttgt gtccgcgcta ccacaatcag ctgttggttg ttgtcgctgc tacggtctgt       300
     gtcttgggac ggttcggtgc tgccagactg gtactttggt tacgcaaatc tgccaatagg       360
     tggagctcgt gcaccaaagc aaccaacttg tgacagtgag cgcgcaattt ccggagttgc       420
     cagaaggagg agccacaatc gtggtaagtc ctatggagag cgacagcagc gcgagtgccg       480
     ctagtgccgc gagcgccagc agcgcgtcgc ggaagccggg acgaggcagg cgcagaagcc       540
     accaggcttc taagagctcg gcagctacgc aggccaagct cgttgctgtg gcctcgcgtg       600
     gtgttcccga gcctgtggga gcgctggatg aggcgccttc gtcgctggag gacccccgga       660
     tggtccctgc tgccactact gctgccacta ctgctgccac tgctgctgcc actgctgctg       720
     ccactgctgc tgcccctgct gctgcccctg ctgctgcccc tgctgctgcc cctgctgctg       780
     cccctgctgc tgcccctgct gctgcccctg ctgctgcccc tgctgctgct cctgttgctg       840
     cccctgtcgc tacacctgct gttgccactg ccacagttgc ctccgctgcc gcccgtgctg       900
     ggcaagcagc tatgatggca gagctgtcgg ccacgcagcg aatggtgaga agcagttttc       960
     gcagcctagg aggagttgac actgatgagc tctcgtttgc tatcagccgc tacgatgagc      1020
     tggtgatggc attgatgctc cgatgtggag aattggagac gcggttggct atgccgcccc      1080
     caccgccgcc gtctatgccg acatccgcca gttcgcgttt tccccagatg cctcaggctg      1140
     cacccattgc ggccccgcgg accacgaagg ttcgcgagac gtggtcagca gtggtgaagt      1200
     gcgatgaccc agcgctatcg gggaaggcga tagccgaaaa ggtgcgcacg atggtcgcac      1260
     cctccctcgg agtcagggtg catgaggtgc gtgagctccg ccgaggtggt ggagcagtta      1320
     tccggactcc ttcagttgga gagctgcaga agcttgtgag ctctaaaaaa ttcgccgaag      1380
     tagggctgaa tgtggcgcga aacgcggccg agaagccgaa agtcgtcgtc tacgacgtcg      1440
     acacagcaat cggccccgag gagttcatgc aggagctcca cgagaataac ttcgacggcg      1500
     agatgacggc ctcggagttc aagaggtcgg tgcacctggt caccaaggcg tggtcggtga      1560
     ctgacggcgc caccgttaac gtgacgctag aggtcagcga caaggcgatg gcgaaactgg      1620
     atgtaggccg tgtctacatc aagtggtttt ctttccgatg ccgatcgcag gtccggacat      1680
     atgcctgcca caggtgtgtg ggtttcgacc acaaggtcag cgaatgccgc cagaagacga      1740
     atgtatgccg ccagtgcggg caacaaggcc acaccgcggc taagtgccag aacccggtgg      1800
     actgccggaa ctgccgtcac agagggcaac cctcggggca ttacatgctc tcggacgtat      1860
     gcccgatata cggcgcggtg ctagcaaggg tgcaagctag acattaatgt ttagcctcat      1920
     ccaagcgaac tgtggccgag gccgagctgc gaccatcgag ctcggagtcc gactcaggag      1980
     atcgggctca atgttcgcac tggtgcagga gccgtatctc agcggcgagg ggatggatgt      2040
     gctgcctgaa ggaatgagga tcttcaccga ccggcgaggg aaggcagcca tcctagtgga      2100
     tcttcaggat gccatctgta tgccagtgga gaccctcacc acggattatg gcgtatgtct      2160
     ggtcgttaaa gggagttttg gctcaatctt cctttgctca gcatactgcc aatttgatgc      2220
     acctttggaa ccgtaccttc ggtacatgga tgcggtcctg ctgcaggcca gcagaacccc      2280
     cgcaatcctg ggcctcgacg cgaatgcagt gtcccccatg tggtttagca aactctctcg      2340
     acatgccgag gggcaagcta actacagtcg gggtgagctg ctgtccgagt ggatgctgga      2400
     ggcaagagcc gccgccctaa accagccaac acaggtgtac acgttcgata actacagagc      2460
     tcgtagtgat atcgacgtga caatcgtcaa cgaggcagca tctatgtggg ccacatatga      2520
     gtggagagtg gatgagtggg aattgagcga tcacaacatc attactgttg tgaccgaacc      2580
     aagtaccacg agcgcagttg agagcatagc tcctgtgccg tcctggaact tctccaatgc      2640
     tcgttggcga ttgttcaaag aggaaatggt gagtagaaca gccgaacttc cggaaaactt      2700
     ctcagagtcg ccgttggacc agcaagtttc gaccctgcgc agtatagtac ataatgtgtg      2760
     cgatattgcg ctgggaagaa agtcgattcg accgcccagc agaagagcac gttggtggac      2820
     tgccgacctc tgcgctgcga gacgcgaagt ccggagactt cgtcgccgac tccaggatgc      2880
     acggcgtcac gatgatgatg ccgcggcaga gctcttggtg gtcgggctga ggcgtgcctc      2940
     agccaactac aagaagctca ttgggagggc taagatgrat gactggaaac gcttcgtggg      3000
     agaaaacgcc gatgacccat gggggcgcgt ctacaagata tgccgaggcc gcagaaagtg      3060
     cacggagatt gggtgcctcc gcgtgaatgg cgagttgatc actgattggg gtgattgcgc      3120
     acgagtgctc ctccgcaact ttttcccagt tgcggagtcc gatgcaccga ttgccatcgt      3180
     ggaggaagtc ccaccggccc ttgaatcgca cgaggttgaa gcctgtatcg cccggctcaa      3240
     gagcaagcgc tcgcccggct tggacggcat caatggcgct atctgcaagg cagtctggcg      3300
     cgccatacct cagcacctgg catcgttgta ttcccgatgc atccaatcgg gatactttcc      3360
     caacgagtgg aagtgtccac gagtagtggc gctgctcaag ggacccgaga aggacaagtg      3420
     tgagccctcc tcatacaggg gaatatgctt gctgccagtt tttggtaagg tgctcgaggc      3480
     aatcatggtg aatcgagcga gagaagtttt tccggaaggc tgcagatggc aattcggatt      3540
     tcgccaagga cgatgtgtgg aggatgcttg gaggcacgtg aagagcagtg ttgacgccag      3600
     cccggcgcaa tatgtgctcg gcacattcgt ggacttcaaa ggagcatttg acaacgtcga      3660
     atggagtgct gcactgcgcc gactagccga cttgggatgc cgggaaatga gcttgtggca      3720
     gagttttttc tccggccgaa gagcagtgat ccgaagcagt tccggtgctg tggatgtgcc      3780
     ggtaactaga ggttgcccgc aggggtcaat tagcggcccg tttatttggg acacgctaat      3840
     ggatgtactg cttcagcgcc tcgagccgta ttgcctgctg agtgcatacg cggatgatct      3900
     gcttcttctc gtcgagggaa actcccgagt cgtgttagag gaaaaaggag cgcaacttat      3960
     gtccatcgta gaaacgtggg gagcggaagt tggcgttgcc gtctcgacca acaagacggt      4020
     aataatgctg ctcaaaggta ctttgagacg tgcgcccacg gtaaggtttg ctggagcgaa      4080
     cttgccgtat gtgcgtacct gtcggtatct tggcatcacg gtcagtgagg gaatgaaatt      4140
     cctcacgcac atagcttcgc tgcgtcagcg gatgaccgga gtcgttggag cattggcgcg      4200
     tgtgcttcga gccgactggg gcttcagtcc tcgagccagg cggaccatat atgacggact      4260
     catggcaccc tgtgtgctgt ttggtgcccc ggtatggtat gacaccgccg ggcaagtagc      4320
     tgccaagagg cgactagcct cctgccagag gctgatcctg cttggatgcc tttcggcttg      4380
     ccgaacagtg tccaccgtgg cactgcaggt tcttggtgga gcccccccgc ttgacttggc      4440
     tgctaagcaa ttagcggtca attacaagct aaaacgtgga tacccgctgg aggagaacga      4500
     ctggctctac ggcgaggaca tcgcttgtct aagctgggag cagagaaaga ctcgcttgga      4560
     ggagtgcatg ctgcggagtt ggcagaacag atgggacgac gacagcgaac caggacgggt      4620
     gacgcatagg ttcatcccag atgtcactct cgtttatcgg gatccaaatt ttggtttctc      4680
     gatgaaggcg tctttcctgc ttactgggca cgggtcgttt aatgcatttt tgcacgggag      4740
     agccctcagc gataccacag cttgcgcatg tggcgatcca tatgaggact ggatgcacgt      4800
     attgtgcgct tgccccctgt atgcagattt gcgagacctc gatggacttg gagtgcagcg      4860
     cgttggcgaa aactggatgt tcgaaggaat cctggaggat cgagagagga cccaacggct      4920
     ggcagcgttc gctgaggaag cgttccgcag gaggaggggc ctttagccca acacctttcg      4980
     ccgtgtggtt agcgggcgag aatactacca cagtccgctg ttgcttgtcg taggaggcga      5040
     ctaatacggc tataggtcgc tccgcccgtg cttgtcggag ccaaaggagt gaggccgacc      5100
     gagcctctaa tttcggtacc acgggttgag tagctctcca aggttgctca ttgaggtagg      5160
     ccccctagtg ggagtatcgt ggtggctgtg gttggtaccc atatcgcggg tagagccttc      5220
     atgctcgacg tttgagttac ggcgatggtt tacgcaaaac tcgggtgctg tgacccttag      5280
     atcagtagag attttaggta gatctcgctc ctcagcaagg gggagtgctt gctcggcaag      5340
     caagcactcg aatctgcgac cggggtggtc gctatgtaca tagctatagc ttccagaccg      5400
     ggacgtttgt ctggcgtatc cagactaatg catctttgga tgtcgtggtt gtaatccctt      5460
     caatgtggaa cacgccacgt aaaacaagtt cggagggatc cgaaatcaca cac             5513
//
ID   R1_Ele1     repbase;    DNA;    INV; 5466 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-sequence-specific R1 clade non-LTR retrotransposon family
DE   from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele1.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5466
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5466
RA   Kojima K.K. and Jurka J.;
RT   "Non-sequence-specific families of R1 clade non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >97% identity, and ~97% identical to the original
CC   sequence in [1]. This family shows no sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           268..1839
FT                 /product="R1_Ele1_1p"
FT                 /translation="MNTNLNQNQNNSSSAGSSSSREANPFARSGLARSPLR
FT                 RAEAGGGSSARSASAGNHISSPANASGEVMDGAWLMRAINKSRDGLSAMEV
FT                 AAQQLDSIIDFASSKSNISKDLKQALFRLRKSMFAAKQNHAEPMATVAAAE
FT                 PVELKVPKSTQTEPFVFAGSPKSAEANAYNKQSQKRARQPSGEELPGGARK
FT                 ARRILTPKTGRSAGKSDPSQASRKAEKGGPEKAGPSRSDGNRGLRPLRGPQ
FT                 SPQVRADQGGDAPWTTVVRKKKKEKQEVQERRDTRPKKSRRVGAKREKGDA
FT                 IIIKTEESKYSEVLKAMRSDAKLADLGADVRSVRRTRTGEMILELKRDKER
FT                 KGAAYKSLAEEVLGEGVEVRALTQSVTLKVMNLDEITNAEELVTALRQQCE
FT                 IQVPTAAVQLRKGPAGTQVALVHLPVADANKSAKVGKIKVGWSVCSLNIHE
FT                 QPVICFRCREPGHKSWGCKGPDRTKLCRRCGEEGHKALGCKNPPKCLICSG
FT                 KSVNNNHPTGGSRCPTFKRAINEKSQCR"
FT   CDS           1821..4808
FT                 /product="R1_Ele1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="RKVTVQVTQLNLNHCDAAQQLLYQAVAEWGTDIAIIS
FT                 DPYRVPAGNGNWVVDGSGKMAAIWTTGKYPVQELVSTTYEGFVIAKVNGVL
FT                 FCSCYAPPSWSTERFTQMLDCMTTVLTGRRPVVIAGDFNAWAVEWGSRITN
FT                 QRGQILLEALAVLDVDLANVGTKSTFSRNGAESIIDVTFCSPGLTSSSNWR
FT                 VDNAYTHSDHLAVRYSIDYNNSRQRVEEAARSRPSPRRWKTSYFNDEVLRE
FT                 ALRRERNLLGLSGDELVAVLSRACDATMPRKVHPRNGRPPTYWWTQAIANL
FT                 RRACLRARRRMQRARTEQEREERRAVFTAAKVALKSEIRASKKACFERLCQ
FT                 SANANPWGDAYRIVMAKTRGAIAPTEQSPQMLEGIIEGLFPRHNPSPWPPF
FT                 VGQPGIGAGDEDRVTDEELVGIAKSLSMGKAPGPDGVPNLALKVAILEAPG
FT                 MFRSAMQICLDEGVFPDAWKRQSLVLLPKAGKPPGDPSAYRPICLIDTAGK
FT                 VLEKIILNRLLRYTESVNGLSSNQFGFRKGKSTVDAILTVKKTAEIALQRK
FT                 RRGIRYCAVVTLDVRNAFNSASWAAIADALLRLGIPEYLYKILGSYFQNRV
FT                 LVYDTEVGRKCFHITSGVPQGSILGPVLWNVMYDEVLRLKFPAGVVIVGFA
FT                 DDITLEVYGESIEEVELTAAHSIAIVEEWMSSRKLELAHHKTEAVVVNNRK
FT                 SVQQAVISVGDCTITSKRSVKHLGVMIDDKLTFGSHVDYACKRASTAIVAL
FT                 SRMMSNSSAVYASKRKLLASVASSILRYGGPAWGTALSTKSYRSKLESTYR
FT                 LMCLRVASAYRTVSHDALCVITGMVPIGILIMEDIECFEMRGTRGIRRTAR
FT                 LASMVKWQRAWDSSTKGVWTHRLIPRLDIWVNRRHGELTFHLTQVLSGHGC
FT                 FRQYLHRFGHAGSPECPVCAGLEETAEHVLFVCPRFRTMRDRMLATCGRDT
FT                 TPDNLVQRMCEDEFGWNAVSSAITHIVSELQRRWRVDSRSG"
XX
SQ   Sequence 5466 BP; 1334 A; 1337 C; 1695 G; 1100 T; 0 other;
     agccgtgtag ttccggcgta tagaatagaa ctacggacga cctgttccgg tggtaagagt        60
     ccaccaaacg gggtaacccc aattcaaggt gtgatgcgaa aaaccgtgct gaggaatgaa       120
     tggtcgaagg ggtgaaaaag atgttcggcc gttaacggag cctgtggggc acctgggcac       180
     ccctcacagt attttgtccc ttaccgcgtt aatgcagggc tctggcgtgg tggacctctt       240
     ttcccgtgct actcgtggga tccaatcatg aatacaaact taaaccaaaa tcaaaataat       300
     agtagtagtg caggtagtag cagtagtagg gaagcgaacc ccttcgcaag aagtgggtta       360
     gctaggtctc cgttgaggag agcggaagca ggaggaggca gcagtgcacg tagtgccagt       420
     gctggaaacc atatttcatc cccggctaac gcatcgggtg aggttatgga tggagcgtgg       480
     ttgatgaggg ccatcaataa aagtagagat gggctctctg cgatggaagt ggctgcacag       540
     cagctcgact ccataattga ctttgcgtcc tcgaagtcta acatcagcaa ggacctcaag       600
     caggccctgt tcagacttcg taagtcgatg ttcgcggcca agcagaacca tgctgaaccc       660
     atggcgactg tggctgcggc agaacccgtg gaattgaagg tgccgaagtc tacccagacg       720
     gagcccttcg tcttcgcggg tagccccaaa agtgcggaag cgaatgctta caacaagcaa       780
     tcgcagaagc gcgcgaggca gccgtcaggg gaggagctac ccggcggcgc tcgcaaggcc       840
     aggcggatat taaccccgaa aaccggcaga agtgccggaa aatcggaccc cagccaggcg       900
     tcccggaaag ccgagaaggg tgggcccgaa aaggctggcc cctcacggag tgatgggaac       960
     agggggttgc gacctttgag aggtcctcaa tcaccacagg ttagggcgga tcaggggggg      1020
     gacgccccct ggacaaccgt agtgagaaag aagaagaagg agaagcagga agttcaggag      1080
     cgcagggata ccaggcctaa gaaaagtagg agggtaggtg ccaagcgcga aaagggtgat      1140
     gcgatcatca tcaagacgga agagtccaag tactcggaag tcctgaaggc gatgcgcagt      1200
     gacgcgaagc tcgcagatct tggagccgac gtacgcagtg tcagacgcac tcgtacaggt      1260
     gaaatgattc tcgagcttaa gcgcgacaag gagcgcaagg gcgccgccta caaaagtttg      1320
     gcggaagagg tccttggcga gggtgtcgaa gtgagggctc tgacgcagtc agtgactctg      1380
     aaggtgatga accttgacga gatcaccaac gcagaagagc tcgtcacagc actgcggcaa      1440
     cagtgcgaga ttcaggtgcc caccgctgcc gttcagctac ggaaaggtcc ggcaggtact      1500
     caggtggcct tagtacacct acctgtggcg gacgcaaata agtccgctaa ggtaggcaag      1560
     atcaaggttg gttggtcagt atgctcactg aacatacatg agcaaccggt gatctgcttt      1620
     aggtgtaggg aaccaggaca caagtcctgg ggctgtaaag gccctgatag gaccaagttg      1680
     tgtaggcgtt gtggtgagga aggtcataag gcactaggct gcaagaaccc tcccaagtgc      1740
     ttgatttgtt ccggcaagtc cgtgaacaac aatcatccaa cgggaggctc aaggtgcccg      1800
     accttcaaac gagccattaa cgaaaagtca cagtgcaggt aacgcagctg aacctgaacc      1860
     actgtgacgc agctcagcaa ctgctgtacc aggcagttgc tgagtggggg acggacatcg      1920
     ccatcatatc ggacccatac cgagtacccg ccggcaacgg caactgggtc gtggatggat      1980
     ccggaaaaat ggcggcgata tggacgacgg gtaaataccc cgtccaggag ttggtgtcta      2040
     ctacctacga gggcttcgtg atcgccaagg taaacggggt cctcttttgt agctgctatg      2100
     cgcctccgag ttggtcgacc gagcggttca cgcagatgct ggactgcatg acgaccgtgt      2160
     tgacagggcg aaggccagta gtaatagcgg gtgacttcaa tgcctgggcc gtggaatggg      2220
     gaagccgcat cacgaaccag cgaggtcaaa tcctgctaga ggcactggcc gtgctagatg      2280
     tcgatctggc taatgttggt accaaaagta ccttcagccg aaacggagcg gagtcgatta      2340
     tcgacgttac tttttgtagt cctggcctaa cgagtagttc gaactggagg gtagacaatg      2400
     cctacactca cagcgaccac ctggcggttc gctacagtat cgactacaac aacagcaggc      2460
     agcgcgtaga ggaagcggct aggtcacggc caagccctcg taggtggaag acatcgtact      2520
     tcaatgacga agtacttagg gaggcgctcc gtcgtgagcg taacctactc ggcctaagcg      2580
     gggacgaact ggtagcggtg ctttcgcgtg cgtgcgatgc gaccatgcct aggaaagtcc      2640
     accctagaaa tgggagacca ccgacgtact ggtggactca agcaattgcg aacctgcgcc      2700
     gtgcctgcct acgggccagg aggcggatgc agcgagcacg taccgagcag gagcgtgaag      2760
     aacgacgggc ggtgttcacc gctgccaaag tcgcgctgaa gtccgagata agggcaagca      2820
     aaaaggcctg ctttgagaga ctctgtcaga gtgccaacgc gaacccgtgg ggtgatgcct      2880
     acaggatcgt tatggcgaag acaagaggtg caattgctcc tacggagcaa tctccacaga      2940
     tgctggaggg gatcatcgag gggctctttc cgcgccacaa ccctagccca tggcctcctt      3000
     ttgtaggaca gccggggatt ggggctggcg atgaggatag agtaaccgat gaggaacttg      3060
     tagggattgc aaaatcccta agcatgggga aggcaccagg tccggacgga gttccaaacc      3120
     tggccctcaa agtcgcaatc ttggaggctc ccggtatgtt cagatctgct atgcagatat      3180
     gcctggacga gggagtattt ccagatgcgt ggaagaggca gagcctggta ctattgccaa      3240
     aggcggggaa accacctggt gacccgtcgg cgtatagacc aatatgcttg attgacacgg      3300
     cggggaaggt gctcgagaag atcatcctca acagactgtt gaggtacact gagagtgtaa      3360
     atggtctctc aagcaaccag ttcggcttcc ggaaagggaa gtccaccgta gacgctattc      3420
     tgacggttaa gaaaaccgct gagatagcac tccagcgtaa gaggaggggg attcgctact      3480
     gcgcagtagt gactctggat gtaaggaacg catttaatag tgccagttgg gcggctattg      3540
     ccgatgcgct cctgcgtctg gggatacccg agtacctgta caagattctc ggaagttact      3600
     tccagaatcg ggtattagtc tatgacacag aggtgggtcg gaagtgcttt cacataacct      3660
     caggagtccc gcaaggttcc atcctgggcc cggtgttatg gaatgtcatg tacgacgagg      3720
     tgttgagatt aaaattcccg gcgggtgtgg tcatcgttgg ctttgccgac gatattacgc      3780
     tggaggtcta cggtgaatcg atcgaagaag tggaattgac tgcagcccac tcgatcgcaa      3840
     ttgtggagga gtggatgagc tccaggaaac tggaattggc tcaccacaaa actgaggcgg      3900
     ttgttgtcaa caaccgaaag tcggtgcagc aagcggtgat cagtgtaggc gactgcacga      3960
     tcacttcgaa gcgctccgtc aaacacttgg gggtgatgat cgacgataag cttaccttcg      4020
     gtagccacgt cgattatgcc tgcaagagag cctccacagc tattgtggca ctgtcccgga      4080
     tgatgtccaa tagctctgcg gtgtacgcca gcaagcgaaa gcttctggcc agtgtcgcct      4140
     cgtccatact gaggtatggt ggcccggctt ggggcacggc cttaagtacc aagagctacc      4200
     gtagcaagct agagagtact tataggctaa tgtgcctgag ggttgcgagc gcgtaccgta      4260
     ccgtgtcaca cgatgcactc tgcgtcatca ccggtatggt gcctattggt atccttatca      4320
     tggaagacat agagtgcttc gaaatgcgcg gcacaagagg catacgcagg actgccagac      4380
     tggcctccat ggtcaaatgg cagcgtgcgt gggacagttc caccaaggga gtgtggactc      4440
     acaggttgat tccgaggtta gatatctggg tcaataggcg ccatggggaa ctaacattcc      4500
     acctgacaca ggtcctttcg ggccatggtt gctttagaca gtatctacac cgtttcggtc      4560
     atgcgggttc tcccgaatgt ccagtttgtg caggtttaga ggaaacggcg gaacacgttt      4620
     tgttcgtgtg cccgcgtttc cgcacaatgc gtgaccgcat gttagccaca tgcggtcggg      4680
     acacgactcc ggacaatttg gtccagagga tgtgtgaaga cgagtttggc tggaatgccg      4740
     tttcatcggc tatcacccac atcgtctcgg aactgcaaag gaggtggcga gtggactcga      4800
     ggagtggcta gtgcagacgc taaacaacag gtggtccaag ggttcgcagt cggctacgta      4860
     ggtcataccg gtgccctacg gtcgaaatcg acccttacag cgattaagtg gccgcgggga      4920
     gaacatcctg gtagcgctgc tgtcgtggcg ccggcctact gggtggatac gagcctctgg      4980
     ttgttcgggg caggtggagg ccccttcgtc agcaatccca gctggtgcta gctgataggg      5040
     cctgagcctt cagtaggtca aattgcgaag cccgcagtat cagttcttga tacctgcggt      5100
     gcagctgggc gcgggcgtag tggtcgaccc tgcccgcttt cagcggacaa cgggaggtga      5160
     ggaccacctg ggaagctggc aaagcgccag catgctacct tggtggaccc ccctaagcgt      5220
     gtcatcgatg ttcgttgctg catggctacg cagctaacct ggaggatgcg atgtgcaata      5280
     gcccctctcc gaagcaatgc cttcttggtg gtcccggaga gacgaagggt ttggcggcaa      5340
     tggaaatggt ttagtgggtc gggggtgtag tcctgtttac tgcttgcatg tagtaaatgg      5400
     tccctaaccc cacacggcgt ctgttgagca gattatcccc ccattgctta gaagaaaaaa      5460
     aaaaaa                                                                 5466
//
ID   R1_Ele4     repbase;    DNA;    INV; 6005 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-sequence-specific R1 clade non-LTR retrotransposon family
DE   from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6005
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6005
RA   Kojima K.K. and Jurka J.;
RT   "Non-sequence-specific families of R1 clade non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >99% identity, and ~99% identical to the original
CC   sequence in [1]. This family shows no sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           1170..2705
FT                 /product="R1_Ele4_1p"
FT                 /translation="MINQNKQLAECEGEASGPISNRLRFPPRKEATNFIEN
FT                 SVGKSLDTVTTAGTGRSSATCVVTDGPGLIEAMDRNREYLPKMQVAAEQLD
FT                 VIIEYVKSKTNISKDLKTSLLKLRQSVLAAKQDYEKAKEQLGKVEGQKDTR
FT                 SCQTEVFSFTGNANISDDIIRYAMRKREASGDEYVAKRRMVAKGKVTYAAV
FT                 LQSGKAGTSQAPRSRGHGNKGEANTNPKAKKAKKKEPRVNRNQAVHPQEPR
FT                 AQGNSNPWIRVGNKKKQRKPKTEPKESAKPKTAKRRNLGEALVIKTEEAKY
FT                 AEVLKAMRSTEKLSPLGADVRSIRRTRIGEMILVLKKDAKEKGAVYKQLAQ
FT                 EVLGDEVDVRSLTAEATLQCKNLDEVTDAAEVSAALKEQCDIDVASKAIHL
FT                 RKGPQGTQVAAIRLPVAEANKAKNLGILKVGWSVCRLSIQQPPEVCFKCFG
FT                 KGHKSWNCNGPDRSKMCRKCGAEGHRASDCKQIAKCLICVDRADNGHLTGG
FT                 PKCPGTSGVSKQPKRK"
FT   CDS           2618..5668
FT                 /product="R1_Ele4_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MCRQSRQRTLNGRTQMSGHKRSIKAAKTEVTQLNLNH
FT                 CDAAQQLLWQSVSETKTDVVLLSDPYRIPANNGNWVADRSQQLAAIGTTGR
FT                 YPIQEVVSSSNDGFAIAKINGVFYCSCYAPPRWSIEEFSHMVDRMMAELAN
FT                 RQPVVIAGDFNAWAVEWGSRCTNQRGQLLLESLAALNVELANVGTVSTFRR
FT                 NGAESIIDVTFCSPNLLGTMNWRVDDGYTHSDHQSIRYSIIPGGQKAARCN
FT                 STQARGWKTARFDGEVFTEALRRERNTLDLNGEELVAMISRACDASMPRKA
FT                 PPRENRPPVYWWCESIANLRAICLRARRRMQRARTEAQREERGAAFREAKL
FT                 ALKKEIKSRKRACFESLCESANSSPWGDAYRVVMAKTKGAIAPQEKSPELL
FT                 RSIIDVLFPHHPISPWPPAPYAADEGEEVARVTNEELAEVVKSFASNKAPG
FT                 PDGIPNVALKAAVNTDPDMFRTTMQRCIDQGIFPDVWKRQKLVLLPKAGKP
FT                 PGDPSAYRPICLLDTTGKLLERLILNRLVPYTESADGLSNNQFGFRKGKST
FT                 LDAIQSVVQTAEVAIEHKRSGIRYCAVVTLDVKNAFNSASWEAIAHALHRL
FT                 KVPVQLCKLLESYFDGRILLYDTEEGQKSVRITAGVPQGSILGPLLWNAMY
FT                 DDVLRLPLPTGVKIVGFADDITLVVYGESMEEVELTAAHSISLVEEWMKSR
FT                 KLGLARHKTEVVVVNNRKSEQRALISVGDCTIESKRSLRHLGVMIDDKLSF
FT                 ASHVEYACKRASTAIAALSRMMSNSSAVIASKRKLLASVALSILRYGGPIW
FT                 SKALRTNRNLKRLESTYRIMCLRVASAYRTVSKEAVCIIAGMTPIGLIIKE
FT                 DVQCFNQRGTRGVRDTCKEETLRSWQQEWDNSTKGRWTHRLIPNVSDWYGR
FT                 SHGEVNFHLTQFLSGHGCYRQYLHRFGHSESPACPNCAGVEETAEHVVFDC
FT                 PRFIVVRGRMLTTCGGDTSPDNIIERMCADAECWNAVTTAVTHIMLELQRL
FT                 WRADQELAAED"
XX
SQ   Sequence 6005 BP; 1692 A; 1396 C; 1669 G; 1248 T; 0 other;
     caggagttaa tcatcaatgt taacttcctt ttcccgaaca gcctagatag ccgtgtagtg        60
     tcggtagcgg ttgtttcaat tggctaagaa ttaacactac ggactgcctg ttccggtggt       120
     ataagtccat ctcacaggtg acccctaatt catgccgctt taagcttacc gtgcctaaga       180
     atgaatggtt aggggggtct aaaaaaaacc taaccgcaaa cggagcctgt ggagtaccag       240
     ggcgccctct acagtattgt gcccttcctg tgctacccgg agcaatggtg caggtgacct       300
     tgtgtttctc cgagacaatc ggcttccctt cttcagtctc aaacctgagg ctaaataagg       360
     gtgggattat aaggatgttg taaattagtt taaatttttc acccttatgg cttcgcatta       420
     tgcgtttttt tttttgttgg ggcagcaggg acgacagtcc aggggcttaa cggacccccc       480
     cccccaggac ctctgcgagt tggggagttg cccaggatgt ggtgaagttc gcagtgggct       540
     ctgatgaacc ttcataaaaa ccacaaaaat ccgaatgcaa ctctgtcaca gcgaccggtg       600
     ccgcttaaag taccctagcc caaactaaca ggagtgccaa ccggcacatc aggattgata       660
     ccagtgagat cctgattatg gcatactggt cgcgatacaa acggacaagg catggaatta       720
     cgagtaggag tgcttcgagc acattgggac caacgccagt acggccccaa ttatgtatac       780
     tggcagcgca cgacaaagga caagtaacgg tatatgtact ggataatatg ctttgaggct       840
     gacagcggcg acattctact cccttagtag ggtcgggtga cactggcccg aaacggcgag       900
     tgggttaatg gcgcaggctg cccccgtccc gtaaaaccgt ggcaggcctt agagtacgtt       960
     ccaaatccgt cgcctggttg ttccaactgg gcgggagtag gctcagatgc cattacctga      1020
     cctgcgccga tccggctctg aacatagtac cccataaagg actatgtcaa ccctagcatg      1080
     gcctccctgc ttgcatagat aaccatggga ttataaaggc gactattcca gcggagatgg      1140
     atagcggctc ttagggggac ccataagaga tgatcaacca aaacaaacaa ctagcggaat      1200
     gtgaaggaga ggcttctgga cctatcagta accggctaag gttcccgcca aggaaggagg      1260
     cgaccaactt tattgaaaac agtgtgggca aaagcctaga tactgtgacg acggcaggca      1320
     ctggccgctc cagtgcaaca tgtgtggtga ccgatggccc gggactaatc gaggccatgg      1380
     atcgcaatag ggagtacctc cctaaaatgc aggtagctgc tgagcaactt gatgtcatca      1440
     tcgaatatgt taaaagcaaa acaaatatca gcaaagactt gaaaacaagt ctactgaaat      1500
     tgcgacaatc agtcctagct gcaaagcagg actacgagaa agccaaggaa caactgggca      1560
     aggtagaagg ccaaaaagac actaggtcgt gtcagaccga agtgttttcc ttcacaggca      1620
     acgcgaatat atctgatgat attattcgat acgcgatgcg gaagagggaa gcttccgggg      1680
     atgaatacgt ggcgaaaaga cgtatggttg ctaagggaaa agtgacctac gcggccgtcc      1740
     tccaaagcgg aaaagctggc acgagccaag ccccgcgatc aagaggacat ggcaacaaag      1800
     gagaggccaa caccaatcct aaggccaaga aagccaagaa aaaggagcca cgggttaacc      1860
     ggaaccaggc agtgcatcca caggaaccac gggcgcaagg caacagcaac ccgtggatac      1920
     gagttggaaa taagaaaaaa cagaggaaac cgaaaacgga gcccaaggag agcgctaaac      1980
     cgaaaacagc gaaacgtagg aatttaggcg aagccctcgt tatcaaaacg gaggaagcaa      2040
     aatacgccga ggttctgaag gcgatgcgaa gcacagagaa gctatcgcca ttgggcgcag      2100
     acgtgcgaag cataaggcga actaggattg gtgaaatgat cctagtctta aagaaggacg      2160
     ccaaggaaaa gggtgcagtc tataagcaac tggcacaaga agtacttggt gacgaggttg      2220
     atgtaagatc ccttactgct gaagcgactc tccagtgtaa aaatctggat gaggtcaccg      2280
     atgcagcgga ggtctcggct gccctcaaag agcagtgtga catcgacgta gccagtaagg      2340
     ccatccacct tagaaagggc ccgcagggca cccaggtggc ggcgatcagg ctgccggtcg      2400
     cagaggccaa caaagcgaag aacttgggca tactcaaggt aggctggtcg gtttgccggc      2460
     tgagcataca acagcctcct gaagtttgct tcaagtgttt cgggaagggc cataagtcgt      2520
     ggaattgcaa tggtcccgac agaagtaaga tgtgcagaaa atgcggcgct gaaggccata      2580
     gggcaagcga ttgtaagcaa atcgctaagt gcctaatatg tgtcgacaga gcagacaacg      2640
     gacacttaac gggcggaccc aaatgtccgg gcacaagcgg agtatcaaag cagccaaaac      2700
     ggaagtaaca cagttaaatt taaaccactg tgatgcagcc cagcagctgc tttggcagtc      2760
     agtctcggaa accaagactg acgtggtgtt attatcggac ccataccgca taccagccaa      2820
     caacgggaac tgggtggcgg ataggtctca acagctagca gctataggga cgacaggacg      2880
     atacccaatc caagaagtag tctctagctc aaatgacggt tttgcgatag caaaaatcaa      2940
     cggcgtgttc tattgcagtt gttacgcgcc cccaaggtgg tcgattgagg aattttccca      3000
     catggttgac aggatgatgg ccgaactagc taatcggcag ccagtagtga tagctggcga      3060
     ctttaatgca tgggcagtgg agtggggtag ccgctgcacc aatcaaagag gccagctatt      3120
     gttggaatcc ctggccgcat taaatgtaga gctggcaaat gtgggtacag tgagtacctt      3180
     ccgcagaaat ggtgcagaat cgatcatcga cgtgacgttt tgtagtccta accttttagg      3240
     taccatgaac tggcgcgttg atgacggtta tactcatagc gatcatcaat cgattcgcta      3300
     tagtataata ccaggcgggc agaaggcagc gcgatgtaac tcgacccaag cccgaggatg      3360
     gaaaacagcg cgcttcgacg gcgaagtatt cactgaagcc ctgaggcgcg aacgaaacac      3420
     tctggaccta aacggtgaag agctagttgc tatgatatca cgagcgtgtg atgcttccat      3480
     gccgagaaaa gcccctccta gagagaacag gccgccagtg tattggtggt gcgaatcaat      3540
     tgcaaatctt cgagcaatct gccttcgggc tagacgaaga atgcaacgcg cacgcacaga      3600
     agcacaaaga gaggaacgcg gtgcagcatt cagagaggca aagttggctc tcaaaaagga      3660
     aatcaagagt cgaaaacggg catgctttga aagtctatgc gagagtgcca attctagtcc      3720
     atggggtgac gcctacagag tggtaatggc taagaccaaa ggagccatag cgccccaaga      3780
     gaaatcgccc gagttgctgc gatcgataat cgatgtactc ttcccgcacc atcccataag      3840
     cccatggccc ccagcgccgt atgcggcaga tgaaggagaa gaagtggcga gagtgacgaa      3900
     cgaagagctg gcagaagtcg tgaaatcatt cgcgtcaaac aaggcaccgg gacccgatgg      3960
     tatcccgaat gttgccttaa aagcggcagt gaacacggat ccggacatgt tcagaaccac      4020
     gatgcaacgc tgcattgatc aaggaatctt cccggatgta tggaagcgac agaaattggt      4080
     gctactacca aaggcgggga aaccaccagg tgacccgtcg gcgtatagac ctatctgtct      4140
     actagatacg acgggcaagt tattggagag gttgattctc aacagactag taccgtatac      4200
     ggagagtgcg gacggcctgt ccaacaacca gtttggattc agaaaaggta aatctactct      4260
     ggacgccatc cagtcggtcg ttcaaacagc tgaggtggca atcgagcata aaaggagcgg      4320
     catccgttac tgcgcggttg tcactctgga tgtgaagaat gcgttcaaca gcgcaagctg      4380
     ggaagcaata gcacacgcgc ttcaccgcct caaggtaccg gtgcagttgt gtaagcttct      4440
     agaaagctat tttgatggta ggattctact gtatgacaca gaggaggggc agaaaagcgt      4500
     tcgaattacc gcgggagtac ctcaaggttc aatcctgggc ccgctgttat ggaatgcgat      4560
     gtacgatgac gtactgaggc tgccccttcc gacgggtgtt aagattgttg gcttcgccga      4620
     cgatatcacc ctagtggtct atggtgaatc gatggaggaa gtagagttga cagcagcgca      4680
     ctctatttcc ctggttgagg aatggatgaa gtctaggaaa ctaggactgg cccgtcacaa      4740
     gactgaggtg gtggtggtca acaaccgcaa gtccgagcaa cgggcgctta tctcggtagg      4800
     tgattgcacc atagagtcca agcgatccct taggcatctt ggggtaatga tcgatgacaa      4860
     gctgagcttc gctagccacg ttgaatatgc ctgtaaaagg gcatctacgg ctatagcggc      4920
     gctttcgagg atgatgtcta acagctctgc tgtaattgcc agcaaacgca agctgctggc      4980
     aagcgtggcg ctatccatac taaggtatgg aggaccaatc tggtcaaaag cgcttagaac      5040
     gaacagaaac ctaaagcggt tggaaagcac gtacaggata atgtgcttaa gagtagcaag      5100
     tgcataccgg acggtatcta aagaggccgt gtgcatcata gccgggatga cgcccatcgg      5160
     gctcatcatc aaggaagatg ttcaatgctt caaccaaagg ggtaccagag gagtccgcga      5220
     cacgtgtaaa gaggaaacgc tcagaagctg gcagcaggaa tgggataact ccactaaggg      5280
     tagatggacc catcgactaa taccaaatgt gtcagattgg tatggtagaa gccatgggga      5340
     agtgaacttc cacctgacgc agtttctgtc aggacatggt tgctatagac agtacctgca      5400
     taggttcggg cactcagaat ctcctgcgtg ccccaattgt gctggtgtag aggaaacagc      5460
     ggagcatgtc gtgttcgatt gcccccgttt cattgttgtg agaggtcgca tgctcactac      5520
     atgcggaggg gacacgtccc ccgacaatat tatagagaga atgtgtgcgg atgccgagtg      5580
     ctggaatgca gtaactacgg ctgtcactca cattatgtta gaattgcagc gtctatggcg      5640
     cgccgaccaa gagttggctg cagaggatta gccctgccga ggctggtccc ttgtaacatt      5700
     gtttaagtcg gctaggagaa gcagtttgcc taggctactt ctgctacacg tgttgtgcta      5760
     tatgcactgg tcccttcccg aagaaatacc gtaaggtggt tccggggaga tgagggtctg      5820
     agtccaaggg tcatgtcgat gcactgttca ccacttgagc aattctaaat gaattgctca      5880
     tgcacagtgc ataggctggt tttagcgggt cgtcgttggt gcgtcatccc cgcattccct      5940
     gagttatctt ctcaggggat ctgtttgcag atttccccct tgtaaaaaac aaaaaaaaaa      6000
     aaaaa                                                                  6005
//
ID   R1_Ele7     repbase;    DNA;    INV; 3371 BP.
XX
AC   .
XX
DT   18-OCT-2010 (Rel. 15.10, Created)
DT   18-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele7.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3371
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3371
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (18-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. This consensus is generated
CC   from 13 sequences with 87-93% identity, and ~92% identical to the
CC   original sequence in [1]. Both sides are truncated, but quite
CC   similar to Waldo elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           1548..3368
FT                 /product="R1_Ele7_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="HRMVTACDATMPRKLEPRNKRRPAYWWNDTLSTLRTA
FT                 CLRARRRAQRAGTEMERRERRTAFREARTALKREIKLSKSNCYKELCRDAD
FT                 TNPWGNAYRVVMAKIKGPSTPAEMCPDKLKLIVEGLFPKHDPTSWPPTPYG
FT                 EDAEAIAEERQVSNDELVEAAKRLKSKKAPGPDGIPNVALKAAILAYPDMF
FT                 RKVLQKCLDEGNFPGIWKIQKLVLLPKPGKPLGDPASFRPICLLDTLGKLL
FT                 ERIILNRLTKCTESERGLSQMQFGFRKGLSTVDAIRAVLECAEKASKQKRR
FT                 GDRYCAVVTIDVKNAFNSASWEVPDYLCKILKSYFQSRILVYETNEGQKSM
FT                 QVTAGVPQGSILGPTLWNGMYDGVLTLRLPRKVKIVGFADDVSLTVMGETL
FT                 EEVEMSVMETIDAIEGWMSGVKLQIAHHKTEVLLVSNCKAVQQMEVNVGRY
FT                 VIAPKRVLKHLGVMIDDRLNFNSHVDYACEKSEKAMNAIGRIMPNLGGPSS
FT                 STRRLLANVSSSILRYGVPAWGKALETKRNREKLNRAFRLMAVRVASAYRT
FT                 ISSDAVCVIAGMIPMHHFGGGYRVLPTKRRQKRTEDGQSRIYGEVEHEWDC
FT                 AEKGRWTHR"
XX
SQ   Sequence 3371 BP; 973 A; 739 C; 1027 G; 629 T; 3 other;
     gactccaaag agagccagaa ccttgccggk agatgggaga ccaggtggat ccaagaagca        60
     gacgcgacag gatactaggg acgccgctcc aagagagatg cgctagtaca aacgccactc       120
     cacgggagaa tgagtggaga aaagtcgttg gcagaaggga gaaaagacaa cagcaaaagc       180
     ggcggaggta caaaaaatgg agcagaagaa gaaagaaaag cctccacttc ggcagatgcc       240
     accaaagagg gacgccgtac tcgtcaaggc taacgatgct acgacgtacg cagcgcttct       300
     caagagcgtc agagaagacc cgatgttaag ggatctgagc gaaaacgtgg tcaaagccag       360
     acgtacccaa aaaggtgaga tgctctttga gttgaaggag aatmctacag tttggctatt       420
     caggagcgca tgactcaatc gctgggtgat aaggcagaag tgaaggctcc aacttgtctg       480
     caaggatctg gacgaaatta cgtcagaaga agagctgagt ggtgcactta agtcacagtg       540
     taacttaggc gacgtgcaaa tggcgatccg attgaggagg catacgagac agtgatgatt       600
     cgtctgccgg tgaccgctgc gaacaaggat tggatggtcg aaatgcgcga ttgagcaagc       660
     agaaaaatgt ttcaagtgct taagctttgg acaccgggca ggcgcttgca acgggccgga       720
     cagatccaaa atgtgctgga attgtggggg aacgggccat cttgtgaaag actgcacgca       780
     gaggccaaag tgcatgctat gcactccaga agatggaaac gaccatcaaa cgtgtggctt       840
     caaatgcaca gcagctgttg tggcagtcaa cgacagaaaa tagtgtgacg tggcgattat       900
     tgcagagccg tatcaagttc cacctgataa cggcaactgg gtggcggata gaacgggaac       960
     ggctgcgata catgttatgg gcagattccc tatccaggaa gtggtggaca attcaggtga      1020
     aggcttcgtc atcgccaaaa tcaacggtgt tgwtgtatgc agttgctatg cacctccgag      1080
     gtggacagtg gagcagttca gccagatggt ggatcagcta actgacaagt tgatcggaag      1140
     gaagccgata ctcattgcag gagacttcaa tgcctgggct gtggtgtggg gcagcagagt      1200
     gaccaacgca agaggatata tcctgcagga agccttagcg aagctagatg tacgattgtg      1260
     caatgaaggc tccgttagca catttcggag aaacggaagg gaatccatca ttgacgttac      1320
     gttttgcagt cctgcactgt cggcgaatat gaactgagag tttgtgaggg gtacacccag      1380
     cgaccatcta gcgattcgct accgcatcgg tcaacggaac cctgcgccaa caatgggaag      1440
     aataactagc gagcggaagt ggaagacgaa agcctttaac gaggaactat tcgttgaggc      1500
     acttcgtcaa gacggcgata acgaggatat cgacgccacc gagctaacac aggatggtaa      1560
     cggcttgtga cgcaactatg ccgcgaaaac tggagccgag gaacaaacgg cgaccagctt      1620
     actggtggaa tgacacgctc agcacgcttc gcactgcttg tctcagagcc agaaggcggg      1680
     ctcagagagc agggacggaa atggagagaa gggagcgaag gacggctttt cgagaagcta      1740
     ggaccgcact caaacgggag atcaagctta gtaaatctaa ttgctacaag gagctgtgcc      1800
     gagatgcaga caccaatccg tggggtaatg cgtatcgagt cgttatggca aagatcaagg      1860
     gcccttcgac gccagctgag atgtgcccag acaagctgaa gttgatcgtg gagggtctct      1920
     tcccgaagca cgatccaacg tcctggccac caacgccgta cggtgaagac gcagaagcaa      1980
     tcgccgagga acggcaagtg tctaacgacg agcttgtaga agcggcgaaa cgactaaaat      2040
     cgaagaaagc ccctggtcca gatggaatac cgaacgtggc gctgaaagct gccatcctgg      2100
     catatccgga catgttcagg aaggtgttgc agaagtgcct tgacgaaggt aactttccag      2160
     gaatatggaa gatccagaaa ctggtactgc tgccaaagcc agggaagcca ctgggagatc      2220
     cagcctcgtt taggcccatt tgcctgctgg atacgctcgg aaaactcctg gaaagaatca      2280
     tccttaacag gctgacgaag tgtacggaga gtgagcgcgg gttgtcgcaa atgcagtttg      2340
     gattccgcaa aggcttatcg acggtagacg caattcgagc agtactcgag tgtgctgaaa      2400
     aggcgtcgaa gcagaaacga agaggagatc gatactgcgc cgtggtcacg atagatgtga      2460
     aaaacgcatt caacagcgcc agctgggagg tccccgacta tctgtgcaag atcctgaaga      2520
     gctacttcca gagcagaatc ctggtgtacg aaacaaatga agggcagaag tcaatgcaag      2580
     tgacagcggg cgtccctcaa ggttccattc tcggtccaac tctttggaac gggatgtacg      2640
     acggagtctt gacactgcgg ctacccagga aggtgaagat tgttggtttt gcggatgatg      2700
     tgtcactaac ggtgatgggc gagacgctgg aagaagtgga gatgtcggtg atggaaacaa      2760
     ttgacgcaat cgagggctgg atgagcggag tcaaactgca gatagctcac cacaaaacag      2820
     aggtactgct agtcagcaac tgcaaggcgg ttcagcagat ggaggtcaac gtcggaaggt      2880
     atgtgattgc accgaagcgc gtgttgaagc acctgggagt aatgatcgac gatcggctga      2940
     atttcaacag ccacgttgat tacgcatgcg aaaagtccga gaaggcaatg aacgcaatag      3000
     ggagaatcat gccaaactta ggcggtccaa gcagcagtac gaggcgtctg ctagctaacg      3060
     tctcgtcatc gatactgagg tatggagttc ctgcttgggg caaggcacta gaaacaaagc      3120
     ggaaccgcga aaagctgaac agagcgtttc ggctgatggc agtgcgagtc gcgagtgcgt      3180
     atagaacgat atcgtcagat gctgtgtgcg ttatagccgg tatgattccc atgcatcact      3240
     ttggcggagg atatcgagtg ctaccaacga agagacgtca gaaacgtacg gaagatggcc      3300
     agagtcggat ctatggcgag gtggagcacg agtgggactg cgcggagaaa ggaagatgga      3360
     cccaccggct t                                                           3371
//
ID   R1_Ele8     repbase;    DNA;    INV; 5677 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An R1 clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele8.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5677
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5677
RA   Kojima K.K. and Jurka J.;
RT   "R1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. Both termini are incomplete;
CC   thus target sequences are unknown. This consensus is ~97%
CC   identical to the original sequence in [1]. ~79% identical to
CC   Waldo-6_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1428
FT                 /product="R1_Ele8_1p"
FT                 /translation="GDPTKMENISDNTVMEVEAAEGENANAFARSGKLQRS
FT                 PVAQQETPASSSRALQGENSRLQAGLGFQSPSFTPKSSNSICQEGLTGNSK
FT                 LMEAKKKVNELYEYMKDRTNVHHKIRNLVTSIKSAINAAENEQKALKMRAE
FT                 AAEKALQNAKEQTVADTPKTPKAHANKPSKKRDRDSPGEEAGSKKQKNEQG
FT                 NYLLNGAENDEEWQTVRSQKNRGKKHGEGREKKKEGTKKXTSRPRREWSKG
FT                 DAILVKANDQTTYAAILRKVREDPKLKDLGENVVRTRRTQRGEMLFELKND
FT                 PVIKSSAYQELIAESLANEASVKALTQEAVVECRYLDEITSNDDLQQELRS
FT                 QCDIGDVAMTIRLSKSYDGTQLATIRLPVAAANKLVEKEKVKIGWSVCPLR
FT                 LVSRAERPPMRCFKCMDFGHQAAICNGPDRSELCRKCGEKGHFGKDCTKRP
FT                 KCLLCKPEEGNAHVTGGFKCPAYKKAIASRQ"
FT   CDS           join(1407..1952,1873..4449)
FT                 /product="R1_Ele8_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="EGDRITTVVEVTQINLNHCDTAQQLLWQSTTEARCDV
FT                 AIIAEPYRVPLDNVNWVADSTGIAAIQVMGRFPIQEVVSSTKEGFVIAKVN
FT                 GVYVGSCYAPPRWTLDEFRRMLEELTDELVGRKPVLIGGDFNAWAVEWGSR
FT                 VTNARGYSLLEALTKLDLQLCNEGTVSTFRKKRTSIDHRSYMVISSCAMKV
FT                 PLAHLGKNGRASIIDLTWCSPSLAGNMNWRVSEEYTHSDHQAIRYTIGRRD
FT                 CAATPRTTTIVQQWKTKAFDKDLFVEALRVDSDIPDLDAVELTRAMVRACD
FT                 ITMPRKRRPSNNRRPVYWWNEALCTLRAACLKARRRYQRARHEEVREERRI
FT                 VFQQARTAFKREIKLSKSNCFKEPWGDAYRVIMAKIKGPSTPAETCADKLR
FT                 VIVEGLFPKHDPTMWPATPYGNEEVGNAEARQISNEELIAAVKALKLNKAP
FT                 GPDGIPNVALKAAVLAYPDMVRKVMQKCLDEGQFPEIWKIQKLVLLPKPGK
FT                 PPGDPGSYRPICLLDTLGKLLERVILSRVMKCTESENGLSERQFGFRKGRS
FT                 TVDAIRTVLERAEKALKQKRRGDRYCAVVTIDVKNAFNSASWEAIATALHR
FT                 MRVPDYLCQILKSYFQNRVLRYETDAGPKELRITAGVPQGSILGPTLWNAM
FT                 YDGVLSLELPKGVEIVGFADDVVLTVIGETQEEVEMLATEAIGLVEDWMEG
FT                 VKLKIAHHKTEVLLVSNCKAVMHGEITVGGHAIASQRKLKHLGVMLDDRLN
FT                 FNSHVDYACEKAAKASNALTRLMPNIGGPRSSKRRLLAVVSTSLLRYGAPA
FT                 WGAALQTKRNRDKLNSTFRLITMRVVSAYRTISSEAACVIAGMIPICIILS
FT                 EDIDCYQRRETRQARKLARIRSLAKWQQEWDASEKGRWTHRLIPNLSAWVN
FT                 REHGEVNFHLTQFLSGHGCFKQYLHRFGHASSPFCPECMEIEETPEHVVFD
FT                 CPRFNIERNTVAAAFGEYFSVEGVVHGMISDPDLWNMMTNMVVQIMSGLQR
FT                 NWREEQRNETQRAALDVGRRGADEPEANLPPELSD"
XX
SQ   Sequence 5677 BP; 1618 A; 1367 C; 1684 G; 1005 T; 3 other;
     ggggacccaa caaaaatgga gaacatctca gacaataccg taatggaggt tgaagcagca        60
     gagggtgaga acgcaaacgc gttcgcgaga agcggaaagc tacaacgttc gccagtagca       120
     cagcaggaga caccagcaag tagcagcagg gcgttgcaag gtgagaattc tagactccaa       180
     gcaggactag ggtttcaaag cccatcgttc acaccgaaat cgagcaacag catttgccag       240
     gaaggcctaa cggggaattc gaagttaatg gaggccaaaa agaaggtcaa tgaactctac       300
     gagtacatga aggacaggac taatgtgcat cacaagatta ggaatctagt aacgagcata       360
     aaatccgcca taaacgcagc cgaaaacgaa cagaaagcgc taaaaatgag agccgaggca       420
     gccgaaaagg cactacaaaa tgctaaggaa caaacagtgg ctgacacgcc taaaacccct       480
     aaggcacatg ccaacaagcc gtcgaagaag cgtgatagag actcgccagg agaagaagcg       540
     ggctcgaaaa aacagaaaaa cgagcagggt aactacctgt tgaacggagc agaaaacgat       600
     gaagaatggc aaaccgtcag gagccagaag aacagaggga agaaacatgg cgaaggaaga       660
     gaaaagaaaa aggagggtac gaagaaagwg actagccgcc cacggcgtga gtggtcgaag       720
     ggggacgcca tactagttaa ggcaaacgac caaaccacgt acgcagcgat tcttcgtaag       780
     gtcagagagg atccgaagct aaaagacctc ggagagaacg tggtcagaac gaggcgtact       840
     cagagaggag aaatgctctt cgagctgaag aacgatccgg tgatcaaaag ctcggcctac       900
     caggagttga ttgctgagtc gttggccaac gaggcaagcg taaaagcctt aactcaggag       960
     gcagtggttg agtgcagata cctggacgag atcacatcca atgatgatct gcaacaggag      1020
     ttgcgatcac agtgcgacat tggagatgtg gccatgacaa tccgactttc aaagtcgtac      1080
     gatggcacac agctagcgac gattcggcta ccagtggccg cagccaacaa actagtggag      1140
     aaggaaaagg tgaaaattgg atggtcggtt tgtccgctga gactcgtctc ccgagccgag      1200
     aggccaccga tgaggtgctt caagtgcatg gacttcggac atcaggcggc aatctgtaac      1260
     ggtcccgaca gatccgagtt gtgcaggaaa tgcggggaga aagggcactt cgggaaagat      1320
     tgcacgaagc gaccaaagtg tttactctgt aaaccggagg aaggaaacgc ccatgtaacg      1380
     ggcggtttta agtgtcctgc gtataagaag gcgatcgcat cacgacagta gtggaagtaa      1440
     cgcagatcaa cttgaatcat tgcgacactg cacagcaact gttgtggcag tcaacaacgg      1500
     aagcaaggtg cgacgttgcg attatagctg agccgtatcg agtaccgctc gataatgtca      1560
     actgggtggc ggacagcacg ggaatagcgg cgatacaggt gatgggtagg ttccccatcc      1620
     aagaagtggt ttctagcacc aaagaaggat tcgtgatcgc gaaagtcaat ggtgtctacg      1680
     taggcagctg ctacgctcct ccgaggtgga cgctcgacga attcaggcgg atgttagagg      1740
     aattaaccga tgagcttgtc ggtcggaagc cagtactaat tggaggagac ttcaatgcat      1800
     gggccgtgga gtggggtagc agggtaacca atgccagagg ttacagcctg ctggaggccc      1860
     tgacaaagct agatctccag ctgtgcaatg aaggtaccgt tagcacattt aggaaaaaac      1920
     ggacgagcat cgatcatcga tcttacatgg tgtagcccat cgctggcggg caacatgaac      1980
     tggagggtaa gtgaggagta tacccatagc gatcaccagg caatccgcta taccattggc      2040
     cgacgggact gcgcggcaac gccgagaacc acaactatcg tacagcagtg gaagacgaag      2100
     gccttcgaca aggacctttt cgtcgaagca cttcgtgtag acagcgatat cccggatctc      2160
     gatgcggtgg agctgacaag ggcgatggtc agggcgtgtg acataacaat gccaagaaaa      2220
     cggaggccat caaacaaccg gcgtcccgta tactggtgga acgaggcact ctgcactctt      2280
     cgcgccgctt gtcttaaagc gaggagacga tatcagagag cgaggcacga ggaagtccga      2340
     gaagagcgaa gaattgtgtt ccagcaagcc agaacggctt tcaaacgaga gattaagctg      2400
     agcaagtcca actgcttcaa agagccttgg ggggatgcct accgagtaat aatggcgaaa      2460
     atcaagggcc cgtcgacgcc ggccgaaaca tgtgcggaca aactgagagt catcgtcgag      2520
     ggtctattcc caaagcatga tcctacaatg tggccggcca caccatatgg caatgaagag      2580
     gtaggaaatg ccgaagctcg tcagatctcc aacgaggagc ttatagcagc tgtgaaagcg      2640
     ctgaagctga acaaagcccc gggtccggac ggaatcccca acgtggcact caaagcagcg      2700
     gtccttgcgt atccagatat ggtaaggaag gttatgcaga aatgcctgga cgaaggtcaa      2760
     tttccagaaa tatggaaaat tcagaaactg gtactgttgc cgaagccagg aaaaccgccc      2820
     ggggatccag gatcatatag gcctatatgt ttactggata cactcggtaa actcttggaa      2880
     cgggttatcc tcagcagggt gatgaaatgc acagagagcg agaacgggct atcagaaagg      2940
     cagtttggat tccggaaagg aaggtcgacg gtggacgcaa ttcggacagt gctcgagagg      3000
     gccgagaaag cattgaaaca aaagcgtaga ggagatcgtt actgcgccgt ggtcacgata      3060
     gatgtgaaga acgcgttcaa cagcgccagc tgggaggcca ttgccactgc gctgcacaga      3120
     atgcgggttc ccgactactt gtgccagatt ttgaagagct acttccaaaa ccgtgtactg      3180
     aggtatgaaa ccgacgccgg cccgaaggag ttaagaataa cggctggagt cccacaaggt      3240
     tccatactgg gaccaacgct gtggaatgcg atgtacgacg gggtcctatc gctggagcta      3300
     cccaaggggg tcgagattgt cggcttcgcc gatgacgtcg tcctaacggt aataggcgag      3360
     acgcaggagg aagtagaaat gctggcaacg gaggcaattg gtctggtcga agattggatg      3420
     gagggagtca agctgaagat agcccaccac aaaacggagg tgctactagt tagcaactgc      3480
     aaagcagtca tgcacggtga gatcactgtc ggggggcatg ccatagcatc acagcgaaag      3540
     ctgaaacacc tgggcgtaat gctagacgat cggctgaact tcaacagtca cgtcgattat      3600
     gcatgcgaga aggcggcgaa ggcgagcaat gcgctcacaa gacttatgcc caacataggt      3660
     ggtcctagaa gcagtaagag gcgtcttctg gctgtcgtat caacatcgct actaagatac      3720
     ggtgcgccag cctggggcgc ggcgctacag accaagcgga atcgggataa gttaaacagc      3780
     acgttccgac tcatcaccat gcgagtggtg agcgcgtaca ggactatatc gtcggaggcg      3840
     gcatgcgtaa tcgctgggat gatcccgatc tgcatcatcc tgtccgaaga catcgactgc      3900
     tatcagcgaa gagaaaccag gcaggcgagg aagttggcaa gaattcgttc gctggctaag      3960
     tggcagcaag aatgggatgc ctccgagaaa ggcaggtgga cccacaggct catcccgaat      4020
     ctatcggcct gggtgaacag ggagcacgga gaagtgaact tccacctgac acagttcttg      4080
     tcaggtcacg gctgcttcaa gcagtatctg catcgattcg gccatgcgtc ttcaccattc      4140
     tgtcctgagt gtatggagat tgaagaaacg ccagaacatg ttgtcttcga ctgcccgagg      4200
     ttcaacatag aacgaaacac ggtggcggct gcttttggtg agtacttcag cgtagaaggt      4260
     gtggtccacg gaatgataag cgatcccgat ctttggaata tgatgaccaa catggtggtg      4320
     caaataatgt ctggcttaca gcgcaactgg cgagaagagc agcgaaacga gacgcagaga      4380
     gcagcgcttg acgtcgggcg tcggggcgct gatgaaccgg aagccaacct cccaccggaa      4440
     ttgtcggact gacctcggca ctcgacaagt cagtctgttg atgagaggag accatcgggc      4500
     gcgatcggag taggctagat cctccgtcgg ggactagacc gagtagaacg agcgtaacgt      4560
     agtatcggta ataagtcgtc gaggcgcctg tgaaccggaa gtcaccctcc aaccggaatt      4620
     gcagaaccga ccctgacact tggccgacca ccatcgagtc ggagtaggct agatcctccg      4680
     ccggggacta gctgagtaga tcgcgaaaca gcaccggcaa atggtcgtcg gggcgcctgt      4740
     gaaccggaag tttccctcca ccggaatcgc aggaccgacc tcggcatctg cccgccagct      4800
     tcgagtaggc tatccaccgt cggggactag gagtagatgg agcaccggca aatgtgtcgg      4860
     ggcgccgtga ccggaagtcc ctccaccgga tcgcaggacc gacctcggca tctgcccgga      4920
     tagcatcggt tcggaagatc ttccgccgcc ggggaaatct tcgtcggagt aggatagatc      4980
     caccgtcggg ggctattctg agtagtgcga gcgtatcacc ggcttgagtc gtcggagcgc      5040
     cagtgaaccg gaagccatcc tccaaccgga atctctgggc cgacttcggc actctaccgg      5100
     ccaacaacgg agtatgaaca acgcgtaacg ttaccggttt cgggagatat tcctccgtcg      5160
     aggtactctc catcggagta ggctagcttc accgtcggga actamgccga gtagtatcga      5220
     tcacgacgaa ccgccggctt tgggtcgtcg gggcgcttgc gaaccggaag tcacccctca      5280
     accggaatcg caagaccgac ctcggcatcc aaccggtccg ccgtagagca tgacgagcag      5340
     agaaatggag tcaagcgcac caacaaaaca cagcagcatc catcgaaaaa gtctcacatg      5400
     gcccaggcgt gtggtcggcc ccaaaatgtg agtgacgttg aagagacaaa ctgcagccag      5460
     atcgaataga gcaagaggtg acgaaaaggc gtagaggcat caacaagccc tctgccccct      5520
     gaagtaatac catgaggtag ttccaggggs acatcggact tgtagcccaa gccaaagaaa      5580
     agtggcgtgg tacagagttg tttccctttt atctctgtta ccgcactcga gacgtgcatc      5640
     cgcagagaga ccgtaataga ccgttaagtg agaacca                               5677
//
ID   R1_Ele9     repbase;    DNA;    INV; 5848 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-sequence-specific R1 clade non-LTR retrotransposon family
DE   from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele9.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-5848
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5848
RA   Kojima K.K. and Jurka J.;
RT   "Non-sequence-specific families of R1 clade non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 13
CC   sequences with >91% identity, and ~99% identical to the original
CC   sequence in [1]. This family shows no sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           694..2097
FT                 /product="R1_Ele9_1p"
FT                 /translation="MENINNIGEGAANPFARSGLVRSPTLQTQQAHQQHEG
FT                 EQEQINVQQQQQFSMWSKVPKLPKVVTAKKFVEELHEYVDKRSNVHKDIKL
FT                 LVTKIQGALGAAVKEWKTLEARADTAEKELAVTKSALEAMRASASRKVETS
FT                 TVTGEAPVSNKNVSSVQTTPFFTPKRARASPEDVRPGGPKKHKDTPGTGVY
FT                 PTTEEATEENSQTPWQVVGKKKEKTSKKNPSENRVSIKGRNKGEALILKAS
FT                 DDSYMEVLRAMRSNPDLKELGEDVQKVRRTLNGEMILELRKESKASSSFYK
FT                 ELAEKAMGDKVEVRAVCPEATLECKNMDEISTEEDLRLAMQQQCALGNVPM
FT                 SIRIRKGPRGMQVASVRLPVDAAKKALKTGKIKVGWSVCPISVSERYQLVA
FT                 CFKCLGFGHIARFCNGPDRSKLCRRCGEEGHKAQDCQKSPKCLICANNGDN
FT                 KHVTGGPRCPAFKQASANMSQWR"
FT   CDS           2163..5054
FT                 /product="R1_Ele9_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MKCDVAIISEPYRIPPTDGNWVADTSKTAAIWTVGRY
FT                 PFQEVVECAEEGFVIAKVDGVYICSCYAPPRWPLEEFNRMLDRLTEELTDR
FT                 RPFVIAGDFNAWAIEWGSRLTNARGCSLLEALAKLDVHLANEGTISTFRRE
FT                 GRESIIDLTFCSPGLARHMNWRVCEEYTGSDHQIIRYRIGGRFQPVYCESQ
FT                 TDVRRWKMADFKKDVFVEALRLEHITLNLSADELTAALTRACDVTMPRVGK
FT                 PANGRRPAYWWNSTIADLRGSCLRARRRMQRACNNAEREERRLIYRAARSA
FT                 LKSEIRLSKKACLQELCDKANANPWGDAYRVAMARLKGPTMPPEKCPERMK
FT                 VIIDGLFPQHDATTWPPTPYGVQDGDYEESRVTNEELIGVAKALDTKKAPG
FT                 PDGIPNLALKTAILENPDMFRTTLQNCIDDGSFPDSWKRQKLVLLPKPGKP
FT                 LGESSAYRPICLLDTSSKLLERIILNRLTKHAENENGLSNMQFGFRKGRST
FT                 VDAIQTVVETMEAAQKQKRRGNRYCAVITLDVKNAFNCASWKAIADSLHSM
FT                 RIPEYICRILKSYFQNRLLIYETDQGVKSIQITAGVPQGSILGPTLWNIMY
FT                 DGVLKLNLPRGVKIVGFADDVVLLVVGESREEVEVLATETIETVEDWMRDK
FT                 KLAIAHHKTEVVMISNRKVVQQAKITVGDCIIDSKREVKHLGVMIDDRLNF
FT                 NKHIDYVCEKAAKAIGALSRIMANDSAIKSSKKRLLASVTTSIIRYAGPAW
FT                 VTALKTERNRSRLSSTYRLMAMRVSSSYRTISSEAVCVIAGMIPISLLLEE
FT                 DRECYTDRHTRGVRERERADTIRKWQHQWDQATTGRWTHRLIPSLSMWIRR
FT                 PYGEVNFHLTQFLSGHGCFRQYLHRFGHTSSASCPECSNTEETAEHIFFAC
FT                 PRFGLEREEMKAILGEDVNVDNVIQRMCNDADKWNAVNRIVTQIMSALQRK
FT                 WRVEQRHEA"
XX
SQ   Sequence 5848 BP; 1717 A; 1328 C; 1636 G; 1167 T; 0 other;
     cggtgggagc ttgggatttt ttcctgttcc aagcgacaca cattcataca tccgtatgaa        60
     ataccacctt tggcacttcc tccgggaggt ggccgagctt ctggtccatc agaacagaag       120
     ctcaagcaga gtctgcctag ggtgtggtgg gggttcaaca gtgggctctg ttgaatctct       180
     acaaaaaaac cacatatctg caagtagttc tgaacaagcg acctggtacc gctttcaaag       240
     tgccttagcc ccctggagtg ccaaccggca catcaggatg gatgccagta aaatcctgat       300
     tatggtatac tggtcacggc gttcaaatag gacaaggcaa ggattttgga ttggacagcg       360
     atattgggct gacagtcgtg tcattctact ccccgagtaa ggaagggtga caccaacttg       420
     aaacggcgag taggctcatg gcgcgactgc ctccgtcccg ttaaaacctt ggcaggcctc       480
     tggatacgtt cagaacccgt ccatcttaag tgatgagtac taggctcgga tgaccattcc       540
     cgacctacgc cgatccggct ctgaacacga tcctcataag ggatcgtgtc aaccctagca       600
     tggcctccct gctcgcatag ataaccatgg gatcatgaaa ggcgactatg tacggcggtt       660
     gacgatagcg gtctggaggg gggaccctga agaatggaga atataaataa catcggagaa       720
     ggcgcggcaa atccgtttgc cagaagcggg ttggtaagat caccaacgct tcaaacccaa       780
     caagcgcatc agcagcacga gggcgagcag gagcaaatta acgtgcagca acagcagcag       840
     tttagtatgt ggtcgaaagt accaaaacta ccgaaggtag ttacagcgaa gaaatttgtg       900
     gaggagctgc acgagtatgt cgacaaaaga agcaatgtgc acaaagacat caaactgttg       960
     gtgacgaaga tccaaggagc ccttggagcg gccgtcaaag aatggaaaac cctggaggcg      1020
     agggctgata cagccgaaaa agagcttgcg gtgaccaagt ccgcgttaga agcaatgcga      1080
     gcctctgcat cgcgaaaagt ggaaacgagt actgtaacgg gggaagcccc agtgtcgaac      1140
     aaaaatgtca gtagcgtgca aacaacgccc ttcttcacgc cgaagagggc aagagcgtca      1200
     ccagaagatg ttagaccagg tggcccaaaa aagcacaagg acacccccgg tactggggta      1260
     tatccaacaa ccgaggaagc tactgaggaa aacagccaaa ctccgtggca agtggtcgga      1320
     aagaagaaag agaagacgag taaaaagaac ccatccgaaa atcgtgtgtc cattaagggg      1380
     cggaacaagg gcgaagcgct cattcttaaa gcaagtgacg attcgtacat ggaggttttg      1440
     cgtgctatgc ggtcgaatcc agatctcaaa gagctaggag aagacgttca aaaagtcagg      1500
     cgtaccctga atggtgagat gatcctcgag ttaagaaagg agtcaaaggc aagcagctcc      1560
     ttctataaag agctagccga aaaagccatg ggggataagg tggaagtaag agctgtgtgt      1620
     ccggaagcga ctctcgaatg taaaaatatg gacgagattt caacggagga agatctgagg      1680
     ttagccatgc agcagcagtg cgcattgggt aacgttccaa tgtcaattcg cattagaaaa      1740
     ggccccagag ggatgcaagt agcctcggtc aggctgcctg ttgacgcagc gaaaaaggcc      1800
     ctcaaaaccg gcaagatcaa agtcggctgg tcggtttgtc cgattagtgt gtctgagcgt      1860
     tatcagctgg tagcgtgctt taagtgtctc gggtttggtc atattgcacg gttctgcaat      1920
     gggccagaca gaagcaaact gtgtagaagg tgtggagaag aaggccataa ggcgcaagac      1980
     tgccagaaat caccgaaatg tctgatctgt gccaacaacg gagacaacaa acacgtcaca      2040
     ggaggcccaa gatgtccggc ctttaaacaa gcgtctgcaa acatgtcaca gtggagatag      2100
     cgcaaataaa cttgaaccac tgtgaggttg ctcagcattt gctggggcag tccgtagcgg      2160
     aaatgaagtg tgacgtagct atcatctctg agccatatcg aatcccacct acagatggga      2220
     attgggtagc agatacaagt aaaacagcgg caatttggac ggttggaaga tacccctttc      2280
     aggaagtggt ggaatgcgca gaagaaggct tcgtaatcgc caaagttgat ggtgtgtaca      2340
     tctgtagttg ctacgcacct ccgcgatggc cgttagaaga attcaaccgt atgctagaca      2400
     gattaacgga agagcttacc gatcgtagac cattcgtcat agccggcgac ttcaatgctt      2460
     gggcgatcga gtggggaagc cgcctcacta acgcaagagg atgcagtctt ttagaagcat      2520
     tagcaaagct agatgttcat ctagccaacg aaggtaccat cagcacattt cgtcgggaag      2580
     gcagagagtc catcatcgat ctcactttct gcagcccggg gctagcaaga cacatgaact      2640
     ggagagtgtg cgaagagtat accggtagcg accatcagat tatccggtac cgcatcgggg      2700
     gcaggttcca gccagtatat tgcgaaagtc agacagacgt acgaaggtgg aaaatggcgg      2760
     acttcaagaa ggacgtgttc gtcgaagcgc ttagacttga acacatcact ttgaacctca      2820
     gtgcagacga gttaacggca gcactaactc gtgcgtgcga tgtaaccatg ccgagagttg      2880
     ggaaaccagc taacggtcgc cgtccagcct actggtggaa ctcgaccatt gccgatctac      2940
     gtgggagctg cctacgagcc agaagaagga tgcagcgggc ttgcaacaac gctgaaagag      3000
     aggaacggag gttaatctac agagcagcaa gatccgcact taaaagcgaa atcaggctta      3060
     gcaaaaaagc ttgtcttcaa gaactctgcg acaaagcaaa cgcgaatccg tggggcgacg      3120
     cgtacagagt agccatggcg aggttaaaag gaccaaccat gccaccggaa aagtgcccgg      3180
     agagaatgaa agttattatt gacggactgt tcccgcagca cgatgccaca acctggccgc      3240
     ccactcctta cggagtgcag gatggagact acgaagaatc tcgagtaaca aatgaggagt      3300
     tgatcggtgt ggcgaaagcc ttggacacaa agaaggcccc aggaccagac ggaatcccaa      3360
     atctggctct gaaaacagcg atcctcgaga accccgatat gttcaggacc acactacaga      3420
     actgcattga cgatggcagc tttccagact cctggaagcg acaaaagttg gtgttgctgc      3480
     caaagccggg taaaccgctt ggcgaatctt cagcgtatag gccgatatgc ttgctggata      3540
     cgtccagcaa actgctcgag agaataatcc tgaacaggct tacgaagcat gcggagaacg      3600
     agaacgggct gtcgaatatg cagttcggct tccggaaagg aaggtctact gtggacgcca      3660
     tccaaactgt tgtggaaacc atggaggcag ctcagaagca gaaaaggaga ggaaaccgtt      3720
     attgtgcggt gatcacacta gatgtgaaga acgctttcaa ctgcgctagc tggaaagcaa      3780
     tcgccgattc gttgcatagc atgagaatac ctgagtacat atgccggatt ctgaagagct      3840
     attttcagaa ccggttactg atatacgaaa cagaccaagg agtaaaaagt attcaaatta      3900
     cggcgggcgt tcctcagggc tctattctcg gcccgactct gtggaatatt atgtacgatg      3960
     gtgtcttgaa attgaatctt cccaggggcg tgaagattgt tggcttcgcg gacgacgtgg      4020
     tgctattggt agtcggtgaa tcaagagagg aggtggaggt actcgccacc gagacgatcg      4080
     agactgtaga agattggatg cgggacaaaa agctggcgat agctcaccac aaaactgaag      4140
     tggttatgat aagcaatcgt aaggttgtgc agcaggcaaa aatcacggtt ggtgattgca      4200
     tcatcgactc gaagcgagaa gttaagcatc tgggggtgat gattgatgat cgacttaact      4260
     tcaacaaaca tatcgactat gtatgtgaaa aagcagcgaa ggcgataggg gcgttatccc      4320
     ggatcatggc aaatgactct gcgattaaaa gcagcaagaa gcggctgcta gcgagcgtca      4380
     caacatcgat catcagatat gcaggtccag catgggtgac tgcactgaag accgaaagga      4440
     atcgatcgcg tctgagcagt acgtataggt tgatggctat gcgggtttca agttcgtacc      4500
     gcaccatttc atcggaggca gtctgtgtga tagcagggat gatacctatc agccttcttc      4560
     tcgaggaaga tcgcgagtgc tacacggacc gccacacaag aggagtccga gaaagagaac      4620
     gtgctgacac catcagaaaa tggcaacatc agtgggatca agctacgact ggcagatgga      4680
     cacatcgtct tatcccaagt ctgtcgatgt ggataagaag accatatggt gaagtaaatt      4740
     ttcacctgac gcagtttttg tctggacatg gttgtttcag acaatatctg cacagattcg      4800
     gtcacacaag ttcggcatcc tgtcccgaat gcagcaacac ggaggaaact gcggaacata      4860
     tattttttgc atgcccgcgg ttcggcctgg aacgagagga gatgaaagcc attcttggtg      4920
     aagatgtaaa cgttgacaat gtcatccaac ggatgtgcaa cgacgcggat aaatggaatg      4980
     cggtgaacag gatagtaacg cagataatgt cggcactaca gcggaagtgg agagtagagc      5040
     agcgacatga agcgtaaaga tcagtgcttg gcttcgggtc gtcggagcgc caacgaaccg      5100
     gaagccattc tccaaccgga atcgtcggac cgacttcggc acttgaatgc cagcctgacg      5160
     aagaaagaag aagaagaaga agaaattagt gcggtatggc cttgggtcgt cggggcgccg      5220
     atgaaccgaa agttatcccc caaccggaat cgtcggaccg acctcggcac ctgacaagcc      5280
     agccgacgaa gaatgaagag gagcttcggg tatgtagggc acccacagtg cggacgtcat      5340
     ccccaaaccg gaactgtcgg accacctctg caacccggag acgaagactg cgcgtgaaat      5400
     ttcccctgcg atatccgccg gtagacgggg ccccacagtg cggcagtttt cccccaccgg      5460
     aactagtgga caacctccgt cgccgggggg agacaggagg accaaagaga gcgagaggga      5520
     gtcagcctaa gaaagcaaga aacagaagcg gagagcttaa agtatggcgg cgttaaaaat      5580
     ttgaagcccc cgtttcccga agtaatacca tgaggtagtt ccgggggaca cataggcttc      5640
     tttccaaaag ccgattatat gtggtgtgat tgagtttttt cccctttttt tcctctttca      5700
     caacaactca agcgagccgg agtagttata gaagacatac gaatgagaac cacagagcca      5760
     aatcccaatc ggcgccaaga cagccgtgga tggtgaatgt ttctagcttt tgctagaagt      5820
     gcgagaaatc tataaaaaaa aataaaaa                                         5848
//
ID   R1_SC       repbase;    DNA;    INV; 3550 BP.
XX
AC   L00945;
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Sciara coprophila retrotransposable element R1 reverse
DE   transcriptase gene, 3' end.
XX
KW   Non-LTR Retrotransposon; Transposable Element; R1_SC;
KW   Retrotransposable element R1; SCR1; reverse transcriptase.
XX
OS   Bradysia coprophila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Bradysia.
XX
RN   [1]
RP   1-3550
RA   Burke D.W., Eickbush G.D., Xiong Y., Jakubczak L.J.
RA   and Eickbush H.T.;
RT   "Sequence relationship of retrotransposable elements R1 and R2
RT   within and between divergent insect species.";
RL   Mol. Biol. Evol 10, 163-185 (1993).
XX
DR   GenBank; L00945; Positions       1    3550.
XX
SQ   Sequence 3550 BP; 788 A; 679 C; 1128 G; 955 T; 0 other;
     ttgcgtgggg aggtaagggg actgccgtct agcttcaggg tggttactag tagaatagtt        60
     aacgatggta ttggaatcag tgcgattgtg ataaacgacc ctgaagctga tgtgcttgtc       120
     attgaggact gtaccgatga gtacggtgtg tgtgtgttga tcaaaggtgc cacatgtagc       180
     atgtacgttg tgtccgtgta ttgtagattt ggtactgccc taggaccata tctgcaatac       240
     atggaaaatg tgcgtgtgaa gtgtggtaat acctatatga tcatggggat ggacgcaaat       300
     gccgtttccc ccctctggtt cagtaagggt gagaacttgg gaaggggaag gctgaatgaa       360
     gcgaatggtc tgctgctcga ggaatggata ctcgaaggca gaatgattgt tatcaatgaa       420
     ccctcggagt ggtacacgtt tagtgggccg aatggctcta gcgacattga cgtgacactg       480
     gtaaacgaag ctggcggtag gttcgggtat gagtggtctg tgcagcctga atggggtgtt       540
     agtgaccata atctgatccg tattcgagtt agcttggacg gactagtggc tgatgcttct       600
     ccatcaccac agtctgccag gtggcagacc cgtgatacgg attggggtga atacatggga       660
     gatgtgaaag ctaaagcaga tgtgtttggc ctggcgcaat atgaaaacgt gagtgtcgat       720
     gagaaggtcg acttactcac agagtggata tacggtgcga acgactggaa catgcggagg       780
     cataccgcgg tgcgaacttt ccagaatgag tggtggtctg tcgaacttgc ggagaagagg       840
     agtgagctgc gacggcgcag gcatgccttt caacgcattc gtaatgcggg tgccgcaagt       900
     ctggcagatc ggctacaggc gtttagggat tgtaagattg agtacaagcg catgttgtgt       960
     gaagccaagc ttcggtgctg gcaggagttt gtggctagcg aatccaatga aaacccctgg      1020
     ggacgagttt ttaagctctg tcggggtagg aggaagcctg tcgatgtctg tagcgttaaa      1080
     gtcgacggtg tgtatactga tacgtgggag ggtagtgtaa atgcgatgat gaacgttttc      1140
     tttcctgcct cgatcgatga tgcgagtgag attgaccggc tgaaggcgat tgccagaccc      1200
     ttaccacctg atctggagat ggatgaagta tccgactccg tgagaaggtg taaggtgagg      1260
     aaaagcccgg ggccggatgg gattgtggga gagatggttc gtgctgtctg gggggcaatc      1320
     ccggaatata tgttctgtct gtacaagcag tgcttgctgg agagttactt tccgcagaaa      1380
     tggaaaatag cgagcttggt catcttactc aagctcttgg accggataag atctgaccca      1440
     ggctcctatc gacctatctg tttgttagat aacttgggca aggtgcttga gggtataatg      1500
     gttaagaggc tggatcaaaa gttgatggat gtggaggttt caccgtatca gttcgcgttc      1560
     acttacggca agtctactga agatgcatgg agatgcgttc agcggcatgt tgaatgctcg      1620
     gagatgaagt acgttattgg gctgaatatc gactttcaag gtgcgtttga caatcttggc      1680
     tggctttcca tgcttctgaa gttagatgag gctcagagta atgagtttgg tttgtggatg      1740
     agttactttg gtggtcgtaa ggtctactat gttggtaaga ctggcatcgt tcggaaagat      1800
     gtgactcgtg ggtgtcctca gggatctaag agtggaccgg cgatgtggaa gcttgtaatg      1860
     aatgaactct tgctggcact cgtggcagct ggattcttca ttgtagcttt tgccgacgac      1920
     ggtaccattg ttattggggc taatagtcga tcggcgttgg aggagctggg cacgcggtgc      1980
     ttgcagttgt gtcatgagtg ggggaagagg gtgtgtgttc cggtgtcggc gggcaagaca      2040
     acgtgtatcc ttatgaaggg tcacttgtcg gccaaccggc ctccgtgcat acggctgaac      2100
     ggcacctcca tctcctacaa gagtgaggtg aagcacctgg gaatcttcgt tgctgagcgt      2160
     atgaatttta ggccgcactt cgtttacctc cggggtaaga ttcttggtct tgttgggtgt      2220
     ttgcgtcgtg tgatgaggaa gtcgtggggc ctggggcgta gggcaacttg tattctgtac      2280
     aaggggctct tcgtggcgtg tatgtcgtat ggtgcaagcg tgtggttccg gactctgcgc      2340
     ttttcgtatg cgtctatctt gctgaataga tgtcaaaggc tagtcctgta tgcatctcta      2400
     aacgtgtgtc ggacggtttc cacagagcga atgcaagttc tccacggaga actaccatgg      2460
     gatttggagg caacccgtag aggcttactc tccgaattcc gtaaaggcat tacgccggtg      2520
     gatggcgatc cgatcacgga tgaagagatg ctagggttga gtggttctca gttcaaggaa      2580
     ctgttgatgg agaggttgct ggatgtgtgg cagggcaggt gggatgtctc ggaaaaggga      2640
     cgcctcactc atgagtttat tccgagtgtc cgatttgttc gtgagaatga gtggatggcc      2700
     tttggactgt gtcttggtta tgtattaacg ggacacggta gcatgaatgg ttttctgcac      2760
     aaacgtggtc tgtcaaatac gccggtatgc atgtgtggag cacctaacga ggacgtcaag      2820
     cacctactcg gggagtgccc gctctacgag gatcttcgtg atctgaatgg ttgtgggtta      2880
     ctcattcgta acggatcgct tgacgttagc ggggcactca gcgagattgg agcgtttgaa      2940
     aagttgaatc agtttgcggt atcgctattc ggcaggaggt cgaggttgat gagagggatg      3000
     aggatccgtg aatgatgcat gtgtacgccg ttatgtcttg aatgtggttg attgtgggga      3060
     gaatgaccgg cgcaggatga gttcagctgg ttgaacggct aaggccaatt ccagactgtc      3120
     tctcggagag tgcggactcc gcgcaattcg agctagtcga tcggagctgg aagttcatgc      3180
     ttccatccga agtggtcttc gataccacct accctacccg agggttaaat cggtaccacg      3240
     ggtgttggga gcccaccagg attgcactat cctcctggtc ccaactatgg ttgaggagcc      3300
     tatccttggc tgaaacgtgg tggctgtggt tcaagtgcgt ttaatacgct ggggtactgc      3360
     tcccgggtga attgcagtaa gggttgtgat aggcccttgc cctcctttgg ctatctggtg      3420
     catgaaacac cggcatataa aggtagtcat ttgacgcgct gattgagcgt atctcaatct      3480
     gctcctctta gagaggacga gatgttatgc cttcgggtgg gtaattctcg ttaatataaa      3540
     gatattattc                                                             3550
//
ID   R2-1_APi    repbase;    DNA;    INV; 3428 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from pea aphid.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   5'-truncated. It is between ACGCACTGCCACGCGTCTCG and
CC   TAGCCAAATGCCTCGTCAT in a 28S rRNA gene.
CC   ABLF02003433 1194-4621.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..2208,2212..3180)
FT                 /product="R2-1_APi_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="GPTLSSTMNSNIEPRIAPGSQTAARGNHVGAGLAGED
FT                 DPVTPAFRCQFCERTFGTKIGVGVHISSAHRSGANHQIDVERKKSRWPDEE
FT                 RRLLALSEAKLVFEGVPSGGINRELRLRHQGRTLDSIKGRRKTQEHRGQVA
FT                 VFLAGLRGNLMQPIAERVETVPEITGVETRRTGNDGAEGADDRLDTLDHLS
FT                 AANCGARKAVELLTTVSGHGVQNLLTAAQCLAEESLDPCHAIAAWYLEYGK
FT                 NSRASRVRMPEGRLTTGTTPVARHSDSRKPATTKALKAASYRRNVTEWRKD
FT                 PRTVADRVLTGHDSRAEMPEPREMLKYWAPIIEGKDDSQPQSPAQDEDQER
FT                 FATVLEPIFTEEVTECLPCANTAPGPDGFPARLWRRLPCNLIAGIFNMFNV
FT                 TGSLPEQLIRSRTIFVAKKGDPKCPSNYRPISIASVAIRHYHRVFAKHLEK
FT                 LSLADSRQRAFRRADGVVENLFLLDSVLKDARKAEKGLCLASLDLSKAFDS
FT                 VSHQSIASTMRGVGLDPRFVEYIRGTYRRSEMVIQVSGQSSRGIRPRCGVR
FT                 QGDPLSPLLFNLVVDTGLRAIPEAVGYTLGRTVVNAIGFADDVILLAETPA
FT                 GLRRACEAFTRQLEVTGLRVNPAKCATPTMIPSGRDRKVKTVGELYPLGGV
FT                 ILPTLDVASLWKYLGVSFAGSRIDVFNSAAYVTALNRISSEPMKAQMRLAI
FT                 ARDYLVPKFVHGLTFAVTNVRRLRCLAHETRRVVRCLDLPTSCPNTYIHSP
FT                 TSAGGLCIPDFTRFVPKNRVKRLTRLENSELPAVGEAFGLHGKTALAIARR
FT                 ALKAHRLKPSHMQDLYASVDGWELKLCSEEPASVAWLRRPHGIPSSDFKDY
FT                 ARIRSNALPTRKRVNRGKAGLTRCQACGLMDETLAHVSQTCQRTHDGRIMR
FT                 HDCLVKRITGGLREKKYEVECEYLYKLHGGNMKPDIVVTISDETRGRISVI
FT                 CDVQVVSGSGPKTWHSIYSYKYADRADLKAAIRARHLSTDVQTVAATLTWR
FT                 GVWVPESFRDLRSLGLSRGLLEGLVTRVLRGTQLNWQSFNQRHLTPHSRTG
FT                 VG"
XX
SQ   Sequence 3428 BP; 789 A; 931 C; 986 G; 722 T; 0 other;
     gggcctacct tatccagcac aatgaatagc aatatagagc ctcggatagc ccctggatcc        60
     caaacagcgg ccaggggcaa ccatgttgga gcgggactag ccggtgaaga tgacccggtg       120
     actcccgcgt tcaggtgtca attctgcgaa agaacgtttg gcaccaagat aggtgtcggt       180
     gtacatatta gtagtgccca taggtccggt gccaatcacc aaatcgacgt cgaacggaaa       240
     aagtcccgtt ggcccgatga ggagcggagg cttctcgcct tgtcagaagc caagttggtc       300
     ttcgaaggtg taccgtcagg cggaatcaac cgcgagcttc ggctccgaca ccagggccgt       360
     acccttgact cgattaaggg acggaggaag acgcaagaac atcgtggcca agtcgcggtg       420
     ttccttgcgg gcttacgtgg aaacctgatg caacccatag ctgaaagggt agagacggta       480
     ccggagatca ccggggtgga gacacggcgt accggtaatg atggcgccga gggcgcagat       540
     gaccgattgg atacattaga ccacttgagc gcggcgaatt gtggagcgcg aaaggcggtg       600
     gaattgctaa ccaccgtgtc cggtcatgga gtacagaacc tccttactgc ggcgcagtgt       660
     ctagccgagg agtcgctaga tccttgccac gcaatagcgg cgtggtattt agaatacggc       720
     aaaaactccc gagccagtag agttcgaatg ccggaagggc gattgacgac gggtaccaca       780
     cccgtcgcta ggcatagcga tagtcgcaag cccgcgacca caaaagcgtt gaaagcggcg       840
     agttacaggc ggaacgtcac cgaatggcgg aaggacccac gtacggtcgc ggacagagtt       900
     cttacggggc acgactccag ggcagagatg ccggagccga gagagatgct taaatactgg       960
     gcgcccatca ttgagggcaa ggacgactct caaccccagt ccccggccca ggacgaagac      1020
     caagaacggt tcgcgacagt gctggagcca atcttcacag aggaggtcac agagtgtctc      1080
     ccgtgcgcca acacagcacc cgggccggat gggttcccgg cccgattatg gcgacgtctc      1140
     ccctgtaacc tgatagctgg tattttcaac atgtttaatg tcaccggctc gttaccagaa      1200
     cagctgatac ggtcacggac catattcgtg gcaaaaaaag gtgaccctaa gtgtccgagc      1260
     aactaccgtc cgatctcgat cgcgtcggta gccatccggc actaccaccg agttttcgct      1320
     aagcacctgg agaagttgtc tctagcggac tcacggcagc gcgcatttcg acgcgcggat      1380
     ggcgtggtgg aaaatctttt cctcctcgac tccgtgctga aggatgcccg caaagccgag      1440
     aagggcctgt gtcttgcgtc cctcgacttg tcgaaggcgt tcgattcagt gtcccaccag      1500
     tccatagctt ccacaatgcg aggcgtgggt cttgacccgc gcttcgtgga gtacattcgc      1560
     ggaacgtacc gtcgctcgga gatggtcatt caggtaagcg ggcagagctc gaggggcatc      1620
     agaccacgtt gtggtgttag acagggggac cccttgtccc cgcttttatt taatctggta      1680
     gtagacacag gtctacgagc tataccggaa gccgttggtt acactctagg tcgtactgta      1740
     gtgaatgcga ttggctttgc ggacgacgtg attctgttgg cggaaacgcc ggcaggatta      1800
     cgacgggcgt gcgaagcctt cactaggcag ttagaggtaa ccggtctcag ggtgaaccca      1860
     gcgaagtgtg caacgcctac catgattcct tcgggaagag accgcaaagt taagaccgtc      1920
     ggtgagctgt accccctcgg gggtgtaatc ttgccaaccc ttgacgttgc gtcgctctgg      1980
     aagtatcttg gtgtatcgtt cgcaggtagt cgaattgacg tgtttaatag cgcggcgtac      2040
     gttacggcgc ttaatcggat ctcctcggag ccgatgaaag cgcaaatgcg actcgctatc      2100
     gcacgagatt acctcgttcc gaagttcgtt cacggactga cgttcgcggt aacgaacgta      2160
     cgtaggttac ggtgtctcgc tcacgagacg cgtcgcgtgg ttagatgcta gttggactta      2220
     cccacttcgt gcccaaatac gtacattcac tcgccaacat cggcgggtgg cttatgtatt      2280
     cccgacttta ctcgattcgt gcccaaaaat cgcgttaaac gactcacaag gcttgagaac      2340
     tccgaacttc cggcggtcgg cgaggccttc gggcttcacg ggaagaccgc cctggcgatc      2400
     gcccgccggg cgttgaaagc tcaccgtctt aagccgagtc atatgcagga cctttatgcg      2460
     agcgttgacg gctgggagtt gaaactatgc tccgaggagc cggcgtccgt cgcgtggctt      2520
     cgtcgtccgc acggcatacc gtcgtcggac ttcaaagatt acgcgcggat caggagcaat      2580
     gctttgccaa ctcgcaagcg tgtcaaccgc gggaaagccg gcctgactag gtgtcaggcc      2640
     tgtggactca tggacgagac gcttgcccat gtctcgcaga cttgtcagcg aacgcatgac      2700
     ggccgcataa tgcgacacga ctgccttgta aaacgcatta caggtggtct gcgtgagaaa      2760
     aagtacgaag ttgagtgcga atacctctat aagctgcatg gtggaaatat gaaaccggac      2820
     atcgtcgtaa cgataagcga cgaaacaaga gggcgtattt ccgttatatg cgatgtacaa      2880
     gtcgtttctg gctccggacc caaaacttgg cactctatat actcatacaa gtatgccgac      2940
     cgagcagatc taaaagccgc gatccgcgcc cgacacctct cgaccgacgt acaaacggtc      3000
     gccgccacgc ttacatggcg tggcgtctgg gttcccgaaa gctttcggga tctcaggtcg      3060
     cttgggttaa gccgtgggct gctcgagggc ttggtcacgc gggtccttag aggcacccag      3120
     cttaactggc aatcgttcaa ccaaagacat ttgacacctc attcgcggac aggagtcggg      3180
     tagtattctc ctgcatagcc gaaaacaacc tcaggcctcc tcgacctgat ttccttgaac      3240
     tctctccaat taatgacctt cctgtccctc tgaaaagtaa ttcccattta ctcccagtag      3300
     gcgtgtaaat gatgtcccga gttaccccgg gactgcttct atccattctg gcttcagggt      3360
     aagttggaac tccccatcgt gccgggcggt tgataaccga ccgtcacagg tgagttgata      3420
     actgatac                                                               3428
//
ID   R2-1_BTe    repbase;    DNA;    INV; 3818 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from buff-tailed bumblebee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_BTe.
XX
OS   Bombus terrestris
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Bombus; Bombus.
XX
RN   [1]
RP   1-3818
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the buff-tailed bumblebee.";
RL   Repbase Reports 16(9), 1891-1891 (2016).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           333..3728
FT                 /product="R2-1_BTe_1p"
FT                 /translation="IAKFDNNTNSASDAAPLSPGGAVADLSASEGTTDNDQ
FT                 AMSPAMSLXTVPLVGNRVACPXCEKREANLFFLNLSDLDRHLTQHHPDAPI
FT                 XWSCIDCAKCFPKLHGARCHIPKCGGASSQARTGEFQCEACPMSFGSRRGL
FT                 STHERHAHPAVRNIKRRGADPPEENTKSWKVEXVARLKGLWEIFKDHKYPN
FT                 KEISKFLTTKTVDXXKYQRKKLNLIGXESPQEATSLATEGGCDLVSSGNAS
FT                 FGSPVGRNENEEELIHEWKLSLKNEINKPTEVPPILKEVYNRLMLIWEEHQ
FT                 DDRDSLTESLDHFIRTALYELINKINKNQTDLKTKRAAKTKSPKNNRNSRK
FT                 RFSYARCQELFHECPRRLADAVVNNDQAYLEPARQPPGSEEVRGLYEKLWG
FT                 QVGSTYVPAPVTRVPKLSLSEIFPPIAAEDVGERIGKIRKKAAAGPDGLQR
FT                 DHLTIPGLPIIMAKIYNILVYCSYFPSAWKENRTTLIPKINKPCSLVENWR
FT                 PITISPILGRIFSSIIDGRIRRGTVLNMRQKGFTSENGCKINIELLNSALN
FT                 YSKRNSGGIFTIVDISKVFDTVPHAALKPCLAKKGVPALIVDLIDEMYKNV
FT                 KTTIKTKDGGVEIMIRRGVKQGDPLSPLLFNLCLEPLLEEIEEQASGINVS
FT                 EHRKVSVLAFADDIVLLGADAREAQHQINVLTDYLQSLMMNLSIEKCQTFE
FT                 VVAKKDTWFIKEPGLKIGNQIMPTVDPDEAFKYLGAKIGPWKGVHCGVIVP
FT                 ELLSVVKRVRKLSLKPGQKVELLTKYIFPRYIYHLLVSPPSDTVLKLLDSE
FT                 VRQEVKTILHLVPSTATGFFYTPKACGGIGIPRFEHIIKLGTLKSAIKIAN
FT                 SIDPAVAGLIDDAAIKKLKQTANSLRINWPASLEDIEKARKRLRKEHISQW
FT                 ADLKCQGQGVPDFIKNKTGNLWLEDHSLLKPSRLIDALRLRTNTFGTRSVL
FT                 ARADKNIDVTCRRCRAQPETLGHILGLCQHTKGLRIKRHDEVKSLLEGRLK
FT                 SKKNNEVFVEPTIKAGGSLFKPDLVIKNGERVLVVDVTVRYENKNYLALAE
FT                 KEKIEKYRPCLRALKEIFNAKGGEILPVVLGSRGTITPNTEKVLKRLGIAN
FT                 NDIKTILLNVLRSSIELCNIFIDD"
XX
SQ   Sequence 3818 BP; 1204 A; 863 C; 892 G; 847 T; 12 other;
     tcaatagtta ctcgggggca ggcgggatat tggtcttgcc ttgcccaagt cacactccta        60
     cctcctcgtg gtaccgccgg taacacgcgc acgtccacat cagcgagggg cgtactcccc       120
     cggatgtggc ggcgcgtggc taaacggagt gtggcgacga aggagcgaaa gactaacaac       180
     tataacggtc ttccgtaacg gctacttgga gccgtgaata atggagccta tattaaaccc       240
     tggaactcgt tccttcgttc tgttgacgac tggaacggca aaggacatga tttggataac       300
     aattggaaac ttaatatcga attcacaatt aaattgcaaa attcgataat aatacgaata       360
     gtgcctcgga cgcagcgcct ctcagtcccg gaggcgctgt ggcggattta tccgcttcag       420
     aggggactac ggataacgac caggctatgt ccccggctat gagtttgatn acggtgccgc       480
     tcgtgggcaa tcgggtcgcc tgtccagnat gtgagaaaag ggaggctaac cttttcttct       540
     taaatctgtc ggacctggac aggcacctaa cacaacacca cccggatgcc ccgatctntt       600
     ggtcntgtat cgactgcgcg aaatgcttcc cgaagcttca tggggctaga tgccacatac       660
     ctaagtgtgg tggcgctagc agccaggcca ggacaggnga gttccagtgc gaggcctgtc       720
     ccatgagctt cgggtcgcgc agagggctat ccacccacga acggcatgcg caccctgccg       780
     tcagaaatat taaaagaagg ggagcggacc ccccagaaga aaatacaaaa tcttggaaag       840
     tagaannggt agcacgcttg aaggggctat gggaaatatt caaagaccat aaatatccca       900
     acaaagaaat cagcaaattc ctcaccacna aaacggtnga tcanatnaaa tatcaaagaa       960
     aaaagctaaa cttaattggt gnggaaagcc cccaagaggc tacctcactg gcaacagagg      1020
     gagggtgcga tctcgttagt tcaggcaatg ccagttttgg ctcgcctgta ggccgcaacg      1080
     agaacgaaga agagctcatc cacgaatgga agctctcgct aaaaaacgaa ataaataagc      1140
     caaccgaggt gccccctatt ttaaaggagg tttacaatcg gctgatgtta atctgggaag      1200
     agcaccaaga tgatcgagac tctctaacgg agagtctcga tcactttata cgcacagctc      1260
     tatacgagct tataaacaaa ataaataaaa accaaacgga tttaaaaact aaaagagcag      1320
     ctaaaacaaa aagcccaaaa aataatagaa actccaggaa gcgattctca tacgctcgtt      1380
     gccaggagtt atttcacgaa tgcccaagga gactggctga tgccgtggtc aataacgatc      1440
     aggcatatct cgaaccagcc aggcaacctc ccggatcaga ggaagtgagg gggctctacg      1500
     aaaagctgtg gggacaagtg ggttccacgt acgtcccggc tccagttacg agagtcccca      1560
     aactatccct atccgagatc ttcccgccga tagcggctga ggatgtgggg gagagaatcg      1620
     gcaaaataag aaagaaagct gcggcaggac cggatggatt acaaagagat cacctaacta      1680
     tccccggcct gcctatcata atggcgaaaa tctataatat actcgtatat tgttcttatt      1740
     ttccctccgc atggaaggag aatagaacaa ctcttattcc aaaaataaat aagccatgca      1800
     gcctggtcga gaactggcga ccaattacta ttagtccgat tctaggccga atcttctcct      1860
     ccattatcga cgggaggata agaagaggca ctgtattaaa tatgaggcag aagggcttta      1920
     catctgaaaa cggatgtaaa attaacatcg aattattaaa ttctgcctta aactatagta      1980
     aaagaaatag cggcgggata ttcactatcg tggatatctc gaaagttttt gatacagtgc      2040
     ctcatgcagc cttaaaacct tgtctggcaa aaaagggtgt gcccgccctt atcgtcgatt      2100
     tgatcgacga aatgtataaa aacgtaaaaa ctactataaa aactaaagat ggcggggtcg      2160
     agattatgat ccgccgagga gttaagcaag gcgaccccct atcgccctta ctcttcaatt      2220
     tatgcttgga gccactgctg gaagagatcg aggagcaagc cagtggaata aatgttagcg      2280
     aacatcgtaa agtatcagtt ctggccttcg cagacgatat cgttctactt ggagcggacg      2340
     cgagggaagc gcaacaccaa ataaacgtac ttaccgacta cctgcaaagc ctcatgatga      2400
     atctatcaat tgaaaaatgc caaaccttcg aggttgtggc caaaaaggat acctggttca      2460
     ttaaggaacc tggacttaaa atcgggaatc aaataatgcc tactgtagat cccgacgagg      2520
     ctttcaaata cctgggcgcc aaaattggtc cctggaaagg cgttcattgt ggtgtaattg      2580
     ttccagaact tctgagcgtg gtgaaaaggg tgaggaaact ctccctcaag ccgggccaga      2640
     aggtggaact tctaactaaa tacatcttcc cccgctacat ttaccatcta cttgtaagtc      2700
     cgccaagcga taccgtcctt aaactactag acagcgaggt cagacaagaa gttaaaacta      2760
     tcttacatct tgtgccttcc actgccacag gcttctttta cactccaaag gcctgtggag      2820
     gaataggaat accgaggttt gaacatataa tcaaactcgg tacccttaaa agtgcaataa      2880
     aaatcgcaaa ctcgatcgat ccagcggtcg ctggcctaat cgatgatgca gccataaaaa      2940
     agttaaagca aacggccaac tccttgcgga tcaattggcc agcctccttg gaggatattg      3000
     aaaaagctcg taaacgtcta aggaaagagc atatcagcca atgggctgat ttaaaatgcc      3060
     agggacaagg cgttcctgat tttatcaaaa ataaaactgg caacctgtgg cttgaggacc      3120
     atagtctact caagccatcg agactcatcg atgcccttcg attaagaaca aatacctttg      3180
     gtacaagatc ggtgctggca cgggccgaca aaaatattga tgtaacatgt cgaagatgtc      3240
     gtgcccagcc cgagaccctt ggacacatac tcgggctatg tcagcacact aaaggcttaa      3300
     gaatcaaaag gcacgatgag gttaaatccc tcctcgaagg aagattaaaa agtaaaaaga      3360
     acaacgaagt atttgtagag ccgacgatta aggccggagg cagtttattt aaaccagacc      3420
     tcgtaattaa aaacggggaa agggttctcg tggtcgacgt aactgtccgc tacgagaaca      3480
     aaaactacct ggccttagcc gaaaaagaaa agatagagaa gtatcggcca tgcctaaggg      3540
     cattaaaaga aatatttaac gccaaaggag gagagattct tccggtggtc ttgggtagta      3600
     gaggcactat cacgcctaac accgagaaag tcctcaagcg attgggaatc gctaacaatg      3660
     atataaagac aatactctta aatgtattaa gaagctcgat agagctgtgt aatatattca      3720
     ttgatgactg aaaacacgat aacgattatg aatcaaaata agaaagtaaa catcccagaa      3780
     attgtctacg tcttatttgt tatctattta tttgttta                              3818
//
ID   R2-1_DEl    repbase;    DNA;    INV; 3558 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila elegans genome:
DE   consensus.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3558
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila elegans genome.";
RL   Repbase Reports 21(8), 4607-4607 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           221..3310
FT                 /product="R2-1_DEl_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MNDLLTTRPSMVGYLEDQHEPNVAATPSHGVLCGICG
FT                 RSFKNLRGLGVHKSYQHKDELDEERRRVDIKLRWSEEEKWMMARKEVELAA
FT                 NGLTKHINKQLAESFTHRSVEAIKKLRQRGDYKEKIEQIRGQSALTPEVAE
FT                 LTIQRRPSNSEQDHPVSTSTTDHLTHLEQSNREIMRTLQGYRQIVGCNSKW
FT                 RAQQLQHIIDVAQFEGKETTLQSLSGYLQDIFPIQNERHILSRPPRRPRNR
FT                 RETRRQQFAQTQRNWDKHKGRCIKSLLNGTDESVMPNREYMEPYWREVMTR
FT                 PSPCSCADEVIQDGHLHERVWSAVTVRDLRANKVSLSSAPGPDGISPKSVK
FT                 EVPSCIMLRILNLILWCGKLPDFIRPARTIFIPKTATANRPQDFRPITVPS
FT                 VLVRQLNAILATRLTSSINWDPRQRGFLPTDGCADNATIVDLILRNSHRKY
FT                 KSCYIATLDVSKAFDAVSHAAVTNTMTAYGLPKDFVDYVQKTYEGGGTTLN
FT                 GEGWMSEEFVPARGVKQGDPLSPILFNLIIDRLLRSLPNEIGAKLGNTMTN
FT                 AAAFADDLVLFAETRMGLQTLLDHTVGFLASVGLNLNADKCFTISIKGQPK
FT                 QKCTVVDRHVFRIGLNECPALKRTDEWKYLGIIFNANGRVRYNPAEDLGPK
FT                 LMRLTRAPLKPQQKLFALRTILIPQLYHKLTLGSVTIGVLRKFDKLVRFYV
FT                 RRWLSLPLDVPVAFIHAPHVCGGLGIPSIRWMAPMLRLRRLSSIKWPHLEQ
FT                 SEIASSFIEDEKRRARVRLLAEHTELLSRPAIEKYFANRLYMSVDGSGLRE
FT                 AEHYAPQHGWVSQPTRLLTGKEYLNGIRIRINALPSKSRTTRGRHELDRQC
FT                 RAGCDASETTNHIMQKCYRTHGRRVARHNCVVNSIKVGLERRGCVVIVEPS
FT                 LHCESGLNKPDLVVIRDNRIHVIDAQVVTDGQSIDEAHQRKIKRYDRPDIR
FT                 TELRRRFGAICEIEFHSATLNWRGIWSGQSVKRLIATDLLSRHESHMISIR
FT                 VIRGSHNCFTQFMCLSGYIRGGRS"
XX
SQ   Sequence 3558 BP; 1078 A; 781 C; 865 G; 834 T; 0 other;
     gacatgggtt taagattgtg cagaaggggt gtaattccga aattcgtaag tcatgcaatc        60
     ttaaatcaag ccgactcaaa acctcctcgt ggtgtctact ggaaatgtca attagtttac       120
     taattggcag ccaatttgag cgacgaaacg ctccaaaggg ttaccagccc tttggtagca       180
     aataaatgtt ggtacaaatg aaaataatga gcctcggata atgaatgatc tgttgacgac       240
     ccgaccctcc atggttggtt acctggagga ccaacatgaa ccaaacgtag cagctacacc       300
     atcacacggt gtgctctgcg gaatatgtgg ccggtccttt aagaatctta gaggactggg       360
     cgtgcataaa tcatatcagc acaaagacga acttgatgaa gaacgtcggc gtgttgatat       420
     aaaactaaga tggagtgagg aagagaagtg gatgatggcg agaaaggagg ttgagcttgc       480
     agcaaatggt ttgacgaaac acataaataa gcaactagcg gaatctttca cacaccgcag       540
     cgtcgaagcc attaaaaagc taagacagag gggtgattat aaggagaaaa tcgagcagat       600
     aagagggcaa tctgctctca ccccagaagt tgccgaatta accatacagc gccgccctag       660
     taatagcgag caagaccacc cagtatcaac atcaaccacg gaccacctca cccatctcga       720
     acagtcgaac agggaaatta tgcggacact acaaggctat cgccaaattg taggatgtaa       780
     ttccaaatgg agagcccaac aattacaaca cattatcgat gtggcgcaat tcgagggaaa       840
     ggaaaccact ctccaaagtt tatccggtta tctccaggat atttttccga ttcagaatga       900
     acgtcacatt ctgtcgagac ctcctcggag gcctcgaaat aggagagaaa ccagaaggca       960
     gcagttcgct caaacacagc gtaactggga taaacataaa ggaagatgca tcaagtccct      1020
     gcttaatgga actgacgagt ctgtaatgcc aaaccgagaa tatatggaac cctattggag      1080
     agaagttatg acacggccta gcccatgctc atgcgcggat gaagtgatcc aagacggtca      1140
     cttgcatgag agggtatggt ccgcagttac agtgcgcgac ctaagggcca ataaagtgtc      1200
     actttcttca gctccggggc ctgatggaat atctccgaaa tctgtcaagg aggtgccatc      1260
     ttgcattatg ctacgcatat tgaacctaat tctatggtgc ggaaaattac ccgacttcat      1320
     ccgaccggcc agaaccatct tcattccgaa gacggcgacg gcaaatcgtc cgcaagactt      1380
     tcgtcccatt acggtaccct cagtgttggt taggcaacta aatgccattt tggcaacccg      1440
     attgacttca tcaatcaatt gggacccgcg acagcggggg ttccttccaa ccgatgggtg      1500
     tgccgacaat gcgacgatag ttgacttaat cttgaggaac agccatagaa aatataaatc      1560
     atgctacatc gccacattag atgtaagcaa agcatttgac gcggtgtctc atgctgcagt      1620
     caccaacacc atgactgcct atggcctacc aaaagacttt gtcgactacg tacagaagac      1680
     gtacgagggc ggcggcacca ctctcaacgg agaaggatgg atgtcagagg aattcgtccc      1740
     tgctagaggt gttaagcagg gtgaccctct gtctcctata ctatttaatc tgatcattga      1800
     tcggttactt agatccctcc ccaacgagat tggtgccaaa cttggaaaca ctatgacaaa      1860
     cgcggccgcg tttgcagacg atttggtcct atttgcggaa actcgaatgg ggcttcaaac      1920
     attgttggat catacagtag gctttttggc ctctgttgga ctcaacctta atgctgataa      1980
     gtgttttact atcagcatta agggtcaacc aaaacagaaa tgtacggtcg tagatcgaca      2040
     cgtatttcgt attggtttga acgagtgtcc agcattgaag cgtacagacg agtggaagta      2100
     tttaggtatc atatttaatg caaatgggag agttcgatac aatccagccg aggacctagg      2160
     tccaaagctg atgagattga cacgagctcc cctaaaacca caacagaagt tatttgcact      2220
     tagaacgatc cttatcccac agctctatca caagttgacc cttgggagtg tgacgatagg      2280
     cgttttaagg aagtttgaca aacttgtacg attctatgtg agaagatggc taagtcttcc      2340
     actggatgtg ccggtagcat tcattcacgc cccccatgta tgtggaggac tcgggattcc      2400
     atcaataaga tggatggcac cgatgcttcg tttaagaaga ttgagcagta taaaatggcc      2460
     tcatctcgaa caatccgaga tagctagctc tttcatcgaa gacgaaaagc ggagggcccg      2520
     ggttagatta ctagcggaac atacagaatt gctatcgcgt ccagcaatag aaaagtactt      2580
     cgcaaataga ttgtacatgt ctgttgatgg tagcggtctc cgtgaagcag agcattatgc      2640
     cccgcaacac ggatgggtaa gtcaacccac gcgtttgcta acaggaaagg aatatttgaa      2700
     cggaattcga atacggataa atgccctacc ttcaaagtct cgtactacga ggggaaggca      2760
     cgaattggat cgacagtgtc gtgcaggatg tgatgcttcc gaaacaacaa accacatcat      2820
     gcagaaatgc taccgaacgc atgggaggcg ggtagctaga cacaactgcg tagtaaattc      2880
     aatcaaggtg ggacttgaga gaagaggctg cgtggtcatt gttgaaccaa gtctgcattg      2940
     cgaatccggc ttgaataaac cagacctggt agtaatccga gataatcgca ttcatgtgat      3000
     tgacgctcag gttgtgacag acggacaatc gattgatgaa gcgcaccaac gcaaaatcaa      3060
     gagatatgac agaccggaca tacgaacgga attgcggcga cgattcggag cgatttgtga      3120
     aatagagttt cactcggcaa ctctaaactg gaggggaatc tggagtggtc aatcggtaaa      3180
     acgattgata gcgacggacc tcctctccag gcacgaatca catatgataa gtatccgagt      3240
     gatacgagga agtcataact gcttcacaca gtttatgtgc ctcagcggat acatacgtgg      3300
     tggacgtagc tgatatgtct ggttcatatc attgcctgct accttggcat taaaaattct      3360
     ggaaacaaaa aggtataaac acagccttcg tggtatgagg tggtttttag tacgtaggcg      3420
     ttgcagagct aattctctct tttggttctg agatctgcaa cgaatcgtgc atgcgagtta      3480
     gcgatatgtg tcggaaacaa tcgaactcgt atctatgaag atttcccatc ctcgcgtcaa      3540
     aaaaaaaaaa aaaaaaaa                                                    3558
//
ID   R2-1_DWi    repbase;    DNA;    INV; 3550 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   willistoni.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-3550
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. willistoni contains two subfamilies of R2.
XX
FH   Key           Location/Qualifiers
FT   CDS           150..3314
FT                 /product="R2-1_DWi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FERRSNSWGYRPLEPRSVGTESNNNSPRSNITITSAT
FT                 SRPGDQPREAIAVVNLAGEIPCAVCGRLFNTRRGLGVHMSHQHKDELDTQR
FT                 QREDVKLRWSEEEAWMMARKEVELEASGNLRFPNKKLAEVFTHRSSEAIKC
FT                 FRKRGEYKAKLEQIRGQSTPTPEALDSITSQPRPSLLERNHQVSSSEAQPI
FT                 NPSEEQSNWEIMRILQGYRPVECSPRWRAQVLQTIVDRAQAVGKETTLQCL
FT                 SNYLLEVFPLPNEPHTIGRSNLRRPRTRRQLRQQEYAQVQRRWDKNTGRCI
FT                 KSLLDGTDESVMPNQEIMEPYWKQVMTNPSTCSCDNTRFRMEHSLETVWSA
FT                 ITPRDLRENKLKLSSAPGPDGITPRTARSVPLGIMLRIMNLILWCGKIPFS
FT                 TRLARTIFIPKTVTANRPQDFRPITVPSVLVRQLNAVLASRLASKVNWDPR
FT                 QRGFLPTDGCADNATLVDLILREHHKRWKSCYLATVDVSKAFDSVSHQAII
FT                 KTLQAYGAPTNFVSFIEEQYKGGGTSLNGAGWSSEVFIPARGVKQGDPLSP
FT                 LLFNLIIDRLLRSYPREIGAKVGNTMTSAAAFADDLVLFAETPMGLQTLLD
FT                 TTVGFLASVGLSLNADKCFTVSIKGQAKQKCTVVERRSFCVGERECPSLKR
FT                 TEEWKYLGIRFTADGRARYSPADDLGPKLLRLTRAPLKPQQKLFALRTVLI
FT                 PQLYHQLTLGSVMIGVLRKCDRLVRQFVRRWLDLPLDVPVAYFHAPHTCGG
FT                 LGIPSIRWIAPMLRLKRLSNIKWPHLEQSEVASSFIDDELQRARDRLKAEN
FT                 VQLCSRPEIDSYFANRLYMSVDGCGLREAGHYGPQHGWVSQPTRLLTGKEY
FT                 LHGVKLRINALPSKSRTTRGRHELERRCRAGCDAPETTNHILQKCYRTHGR
FT                 RVARHNSVVNAVKRGLERKGCVVHVEPSLQCDSGLNKPDLVGIRQNHIYVI
FT                 DVQVVTDGHSLDQAHQRKVERYDRADIRSQMRRFFGATGEIEFHSVTLNWR
FT                 GIWSGQSVKRLIAKDLLIAEDTKLISVRAVNGGVTSFKYFMYCAGYTRS"
XX
SQ   Sequence 3550 BP; 987 A; 800 C; 917 G; 846 T; 0 other;
     gaagctgggt cggatgagcg cagaaggggt gttctttgga acactgtaat tcataagtcg        60
     taagtctgat caagtcgact cgaaacctcc tcgtggtgtt tcctgggtgc tgttgagttc       120
     ctagtctcta ggttcttttc agtagctaat tcgagcggcg aagcaactct tggggttacc       180
     ggccccttga gccaagaagc gttggtacag aatcaaataa taatagtcct cggagcaata       240
     tcactatcac ttcagcgact tcacgtcctg gagaccaacc gagagaggct atagcagtgg       300
     taaatctcgc gggagagatt ccctgtgcag tatgcgggcg cctcttcaat actagaaggg       360
     ggctcggtgt acacatgtca catcaacaca aagacgaact agatacgcaa cgtcagcgtg       420
     aagatgtaaa actccgatgg agcgaggaag aagcgtggat gatggcgaga aaggaggtgg       480
     agctcgaagc aagtggtaat ttgagatttc ctaataagaa gctagcggaa gtatttactc       540
     accgtagctc cgaagcaatt aaatgttttc ggaagagggg tgaatataag gcaaaactgg       600
     agcagatcag agggcaatct actcccaccc cagaagcgtt ggactctatt acctcacagc       660
     ctcgccctag tttactcgag cgaaaccacc aagtatcatc gtcggaagcg caaccaatca       720
     atccatcaga agaacagtcg aactgggaaa tcatgcggat actacagggc tatcgccccg       780
     tagaatgtag tccccggtgg agagcccagg tcttgcaaac tatcgtagat agggcgcagg       840
     ccgtagggaa ggaaaccact ctccaatgct tatccaacta tctcctggaa gtatttccat       900
     taccaaacga accacacacc atcggtcgga gcaatttgcg aagacctcga actaggagac       960
     agttaagaca acaagagtac gcacaggttc agcgtcgttg ggataagaat actgggagat      1020
     gcattaaatc cttgcttgat ggaacagatg agtcggttat gccaaaccaa gagataatgg      1080
     aaccctattg gaaacaagta atgacgaatc ccagcacatg ctcttgcgat aacacaagat      1140
     tccgtatgga acattcgctt gagacggttt ggtcagcgat aacgccacgc gacctgaggg      1200
     aaaataagtt aaagttgtca agtgctccgg gtcctgacgg tatcactcca agaacagcca      1260
     ggagtgtacc cttaggcatt atgctacgca taatgaacct gattctctgg tgcggcaaaa      1320
     taccattctc tacccgactg gccagaacta tcttcattcc gaagactgtg acggcaaatc      1380
     gaccgcaaga ctttcgtcca ataacagtcc cctcggtttt ggtcaggcaa ttaaacgctg      1440
     ttctggcttc tcgattggct tctaaagtca actgggatcc aaggcagcgc ggtttcctac      1500
     ctaccgatgg gtgtgctgat aatgcgacgt tggttgatct cattttgcgg gagcaccata      1560
     aacggtggaa gtcatgttac cttgcgacgg tggatgtcag caaggctttt gactcagtat      1620
     cacaccaggc cattatcaag actttacagg cctatggtgc tccaacaaac tttgtcagct      1680
     tcatagaaga acagtataag ggcggcggaa cctccctcaa tggggcagga tggagttcag      1740
     aggtgtttat acccgcgcgg ggcgttaagc aaggtgaccc tctgtctcca ctattattta      1800
     atcttatcat tgatagatta cttaggtcct accccagaga gattggtgcc aaagtcggaa      1860
     ataccatgac aagcgcggca gcgttcgcgg atgatctggt gctatttgcg gaaactccga      1920
     tggggcttca aacattgttg gataccacgg taggcttcct agcctccgtg ggactctccc      1980
     ttaatgctga taagtgcttc actgtcagta taaaggggca agccaagcag aagtgtactg      2040
     tcgtagaacg acggagcttt tgtgtaggtg agcgcgagtg tccttcattg aagcgtactg      2100
     aagagtggaa gtatttaggt atccggttca ctgcggatgg gcgggctcgg tatagtccag      2160
     cagacgacct cggtccgaag ctgttaagat taacaagagc ccctctgaaa ccacaacaga      2220
     agttatttgc acttaggact gtccttatcc cacaactcta tcaccaacta acacttggga      2280
     gtgtgatgat aggcgtccta agaaaatgtg acagattggt acggcaattc gtaaggagat      2340
     ggttagatct cccactggat gtaccagttg cttactttca cgccccccac acttgtgggg      2400
     gtctcgggat tccgtcaatt agatggatag caccgatgct gcgtctgaag cgattgagca      2460
     atattaaatg gccccacctc gaacaatccg aggtagctag ctctttcatt gacgacgaat      2520
     tgcaaagggc tcgagataga ttaaaggcgg aaaatgtgca gctgtgttcg cgtccagaga      2580
     ttgactcgta tttcgcaaat agattgtaca tgtctgttga tggttgcggt ctccgtgaag      2640
     caggtcatta tggcccgcaa catggatggg tgagtcagcc cacgcgcttg ctaacaggaa      2700
     aggaatattt gcacggtgtc aaattgcgga taaatgccct accctcgaag tctcgtacga      2760
     cgaggggaag gcacgaattg gagagacggt gtcgtgcagg atgtgatgct cccgagacaa      2820
     caaaccacat cttgcaaaaa tgctatcgta cgcatgggag gcgggtagct agacacaaca      2880
     gcgtagtaaa tgccgtcaag cggggacttg aacggaaagg ctgcgttgtc catgtcgaac      2940
     caagtctgca atgcgactcg ggcttaaata aaccggacct ggtgggaatc cgacagaatc      3000
     acatttatgt gatagacgtt caggttgtga cagacggaca ttccttagac caagcgcacc      3060
     agcgcaaggt cgaaaggtac gacagagctg acataagatc acaaatgcgg cgatttttcg      3120
     gagcgacagg tgaaatcgag tttcattccg ttacactcaa ctggagagga atctggagtg      3180
     gtcagtcggt aaaacgattg attgcaaagg atctcctcat cgctgaagat accaaactca      3240
     tcagcgtcag agcagtaaat ggcggagtga cgtccttcaa atatttcatg tattgtgctg      3300
     ggtatactcg aagctagatg tactaacctc tagcttttct tatacttttg cctgctacct      3360
     tggcattaca tctaaaaagg tacaaacatc gcattgtcat aaagaggtgg ttttagtacg      3420
     taggcgctgt gggacttcat tgtcccggtg atgcagtgaa tcgtgcatac gagattgtcc      3480
     agtagttggt tgctcgtatc tttagaagat ttccttcctc ggcgatcaaa aaaaaaaaaa      3540
     aaaaaaaaaa                                                             3550
//
ID   R2-1_MDe    repbase;    DNA;    INV; 3550 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from Hessian fly.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_MDe.
XX
OS   Mayetiola destructor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Cecidomyiidae; Mayetiola.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is uncertain. An insertion around nucleotide 1260 is
CC   removed.
CC   It is between ATCTTTCGCTTACCAATTTG and TAGCCAAATGCCTCGTCATC in a
CC   28S rRNA gene.
CC   AEGA01035205 212-1472 & 2221-4509.
XX
FH   Key           Location/Qualifiers
FT   CDS           229..3306
FT                 /product="R2-1_MDe_1p"
FT                 /note="CCHH zinc fringer, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="IGVNNSRKIVNDGESSDSDLSDDSQITINGSVPLDGS
FT                 DTNQSEEEVVEERCICDACGLWFANAQLLGMHRSRIHPVQHNNDINIDRVK
FT                 ARWTSEEVRMLAEMEVRGINEGERFINLYLVGKFPNRTLDGIKGQRKKQAY
FT                 KNLVNDLLNPSSDSSDSETNESLTDRGSEGVNIAIEEIISSLADNRLKCSK
FT                 GLIKLARKLMQGDPLENNQMSIWLKNVFKNAIPPKGPYYNKKTITTELTRK
FT                 QNRRQDYAEIQKLYRHDFGGAVRKVLEEDGDAVMPPVNDAIQFWRGIFGEP
FT                 FVEENMGRTEYQSKRSLLGLWTPITLEEIKSCELGADSAAGPDGITVVNWI
FT                 GMDIRLRLLFLNMIMKRGRLDDDLKSARTVLIPKGKGNIRPENTRPLSITS
FT                 VVLRHLHKILAKRLKSLQTFSDSQKAFIDCDGTQENLAILNTLLTDARKNL
FT                 KSIHIATLDLRKAFDSVSHKTIIDSITGMGCPKMFIDYVTDLYLNARTVFQ
FT                 YNGSSTFLDIKRGVLQGDPLSPLLFNLVMDRAIVKLSANIGYTYNGAIINC
FT                 IAYTDDIILIAETKCGLQSLIDALTSELASFGLQTNIGKSSTISLVPSGRQ
FT                 KKIKVITEPSFLVSGQFLSAIGVMDVWRYLGVDFRCNVLNGSEYGIDANLR
FT                 KLDRAPLKPQQRLKMLCVAIIPRYLHSLVLGRVNKTKLAGFDNLIRKYVRK
FT                 WLYLPHDVPLAYFYADAKSGGLGIPCVEQQVPLTRKNRLTKFISQESCISN
FT                 ALKQSDFVVRQLEWCDRILKSIGDNVTKEMKSRFWESRLYEMVDTNDLKEA
FT                 KVCRASNSWVNKHSDLISGCDYIHYNHIKVGCLPSKARTTRGTNRDRLCRA
FT                 GCRVSETNYHIIQTCERTYGGRSRRHDRVVDLICENLGNRGFATVKEPKLK
FT                 TSVGLRKPDLLVTIDGATTVVDVQIVNGKTMRNDYSNKVDKYKSIPEMDEI
FT                 IKRKCSSRAVSYNAITISYKGLMMDKSYDLLKNEFKCTEHFIFILITSVLR
FT                 GTWLNWNQFNKNTALAHFAR"
XX
SQ   Sequence 3550 BP; 1098 A; 582 C; 826 G; 1044 T; 0 other;
     tctaacaaat tggaattaca aataattttt taactatgct ggagtcatat gttataggtt        60
     tgatagtagt acatttacta gtcaagcaag tgttgttgaa tacctcttcg tggtgaccgc       120
     taggaacgca ttatctatgt ttataaaaat atttataatg tggctaaaag tcaacaatgc       180
     gccaacgctg catatgtcct accaagtcat atgcggtttt gtgtttagat tggtgttaat       240
     aatagtagaa aaattgtaaa tgatggtgaa tcttcagata gtgacctgtc cgatgattct       300
     cagataacca tcaatggatc tgtcccactg gatgggtccg ataccaatca aagtgaggaa       360
     gaagtggtag aggaaagatg catttgtgat gcttgtggtt tgtggtttgc aaatgcacag       420
     ctgcttggta tgcatcgtag caggattcat cctgttcaac acaacaatga tatcaatatc       480
     gatagggtga aagcgcgatg gacttcagag gaagtgagaa tgttggccga aatggaggtt       540
     aggggaatca acgaaggtga acggtttatc aatttatatt tagttggaaa atttccaaat       600
     cgtactcttg atggtatcaa ggggcaacga aaaaaacagg cctataaaaa cctggtgaat       660
     gatttactaa acccatcgtc tgattcttct gatagcgaga ctaatgaatc tttgaccgac       720
     cggggatctg aaggtgtaaa tattgcaatt gaggagatca tttcttctct tgcggataat       780
     agattgaagt gttcaaaagg gttaataaag ttagccagga aactgatgca aggtgacccg       840
     ttggaaaata atcaaatgtc gatttggtta aaaaatgttt ttaaaaatgc aatccctcct       900
     aaggggccat attataataa aaaaactatt accacggaat taacacgcaa gcaaaacaga       960
     agacaggatt acgctgagat acaaaaattg tatcgtcacg atttcggagg tgcagtacgt      1020
     aaagtactgg aagaggatgg tgatgctgtt atgccaccag tcaacgatgc catccaattt      1080
     tggaggggta ttttcggcga gccttttgtg gaagagaaca tggggcgcac ggagtatcag      1140
     tctaaaagat ccttgttggg tctttggaca ccaattacac tggaggaaat taagagctgt      1200
     gagttgggtg cagactcagc agcaggtcct gatggaatca ctgtggtaaa ttggataggt      1260
     atggatatcc gattgcgtct gctcttctta aacatgatta tgaaaagggg tcgtctggat      1320
     gatgatctta aatctgctcg tacggtgtta attccgaaag gtaaggggaa tattagacct      1380
     gagaatacgc gaccactatc tattacttct gttgtgttaa ggcacttgca taagatactg      1440
     gcgaaacgcc tgaagtcatt acaaactttc agtgatagcc aaaaggcctt catcgattgt      1500
     gatggcactc aggaaaactt agcgattttg aacactttgc taactgatgc aaggaagaat      1560
     ttgaaatcga ttcatattgc aacactggat ttgaggaagg cttttgactc tgtgtcgcat      1620
     aaaacgatta tcgactcaat tacgggcatg ggatgcccaa aaatgtttat tgattatgtg      1680
     acggatcttt acttaaacgc cagaactgtc ttccagtaca atggtagttc tacttttcta      1740
     gatatcaaac gaggggtact tcagggtgat cctttatctc cattactatt taatttggtt      1800
     atggataggg caattgtaaa attgtccgcg aatattggat atacctataa tggagccatt      1860
     ataaattgta ttgcatatac cgatgacata attttgattg ctgaaacgaa gtgtgggctg      1920
     cagtcgctaa ttgatgcatt aacgtctgag ttagcatctt ttgggctaca aaccaacatt      1980
     ggaaaatcga gcactatctc attagtccca tctggtaggc aaaagaaaat taaggttata      2040
     acggagccaa gcttcttggt ctctgggcag tttctgagtg caattggtgt aatggatgta      2100
     tggagatatt tgggggttga ttttcgttgc aatgtgttga atgggagtga gtatggtatt      2160
     gatgcaaatt tgcggaagtt agacagggct ccgttgaaac cacaacagcg cttaaagatg      2220
     ttatgtgttg caattattcc aagatacctg cactctttgg tgctgggtag ggttaataaa      2280
     acaaaactag caggctttga taatttaatt agaaagtatg ttaggaaatg gttatacctt      2340
     ccgcatgatg tacctttggc atatttctat gctgatgcta agtctggtgg tttaggtatc      2400
     ccttgcgtgg aacaacaagt tccattaacg aggaaaaata gactaaccaa atttatttcc      2460
     caggaaagtt gtatctcgaa tgctttaaag cagtccgact ttgtggttag acagttggag      2520
     tggtgtgatc gaattctgaa gagcattggt gacaatgtta caaaggaaat gaaatcacgg      2580
     ttctgggagt cgcgactcta tgaaatggtt gacaccaatg atcttaaaga ggcaaaggtg      2640
     tgcagggctt caaacagctg ggtgaataaa cattctgatc taatatctgg atgcgactat      2700
     attcactaca accatatcaa ggtcggttgt ctgccttcca aagcaagaac tactaggggt      2760
     accaatcgag ataggttatg tagagcgggt tgtagagtta gcgagactaa ctaccatatc      2820
     atacaaacgt gtgaacgaac ctatggtggg cgatctaggc gccatgatcg ggtggttgac      2880
     ttgatttgtg aaaatcttgg aaacagaggt tttgctaccg ttaaggaacc aaaactgaaa      2940
     acatctgttg gccttagaaa accagatctg ctcgtaacta tcgacggtgc cacaacggtg      3000
     gttgatgtgc aaattgtgaa tggcaaaacg atgagaaatg attatagcaa taaagttgat      3060
     aagtataaat ctatcccaga gatggatgag ataataaagc gaaaatgctc ttccagagcg      3120
     gtaagctata atgctataac catttcctac aaggggctga tgatggacaa atcatatgat      3180
     ttgctcaaaa acgaatttaa atgcactgag cactttatat tcatattgat tacgtccgta      3240
     ttgcgtggca cgtggctaaa ctggaatcaa tttaacaaga acacagcttt agctcacttt      3300
     gcccgatgaa tacgaatcat tgaccttata ttgcaaatgg tttctctatt acgggagact      3360
     cactttattg tttttaaatc acaagctgat ttattggggt gaccgggtcc cttctaagca      3420
     tgttattaaa ttttgataaa cgaggcattg tctatgtaag catgatgaga aacttggaaa      3480
     tgattagttt actgaattag ctaatacgat gcattctaaa tatgctaatt cctcgtggaa      3540
     ctgatataca                                                             3550
//
ID   R2-1_MR     repbase;    DNA;    INV; 3572 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is truncated. It is followed by TAGCCAAATGCCTCGTCATC
CC   in a 28S rRNA gene.
CC   AFJA01016676 1-3572.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3423
FT                 /product="R2-1_MR_1p"
FT                 /note="CCHC and CCHH zinc fingers, reverse
FT                 transcriptase and restriction-like endonuclease."
FT                 /translation="WVVWVCSPFYPRLRANTFAPKRFAKPRMPSIPSSGDG
FT                 TGGFTTQSDSNPLVLPPTSDSVCRRRKEVPVRCPSCLLDLSDRPSSSASQH
FT                 VRRCNAPPLQPDGYACEICSSKFKTYPGLRQHIRRAHTQEYNSSDLQLAHS
FT                 RQKSARPQYTDGEIKSIASFEANIPNRSKLLSKEINSIISKETGRTIDAIK
FT                 KLRQRQTYKSYLTEELAALNQFRLRDICPLTPKIVLSKIDGIPPRSFASAS
FT                 GSRTSNVSDTVELPHDQTQDVGPSCATISSSEIVSVLLSIRQDTTPEMSLI
FT                 IEAIISNSPEKNVIDLIEKYINNIAKPVHQNANKKKQRKLYTKLKGNRSKI
FT                 RASNYARIQKLYLKNPTQAASHILSGSPINSPECPSMSEFENYFEKIFAHK
FT                 DIPLKPLSKQVKSTVNISQPIGFEEIHTHLRKLKESAPGIDGITREHLRSM
FT                 SRPDLYALLNIIWGMKCLPPVLRSNRTSLIPKSGNTRELKQWRPIMVSSRV
FT                 LRLLNKVIVSRLENEIKLNYSQRGFTKIDGVMANNTILQTAIRTMRNSSKP
FT                 FIILSIDLAKAFDRVSIVSIIDALWRRGVDEHTICYIEANYRNITTTLECH
FT                 GKRSRPINVDRGVKQGDPISGFLFNVVLDGLLQKLHDQTGIQINGTNIAAL
FT                 AFADDIVLMAPTPMIMRSHIRIVESYFRRHGFEVNVEKCATFQYIPVPGTK
FT                 RLVVETKPLFKINGTDVPTLNVSSQLKYLGLQYGFRGATCPTPSKTEEMLS
FT                 RLGKSPLKPWQKLNVLQRYLIPRLHHGMQMMDVNKKKLTYLDGCIVKFVKE
FT                 TLHLPRTTPTAFIHAPQKSGGLGIPSLRFHIASIYLRRLERIQTRGDSQVR
FT                 AVLNSPVVQVLCAKLTRILGGLDVTTKSAVQSYWAKTLHATALGAGLQTMS
FT                 PGVSSWIFHPPEFWKGRDYIGAIQLRIGLLPTKGAPYMSDTDCRNPSCAGT
FT                 RESLYHVLQRCPVTHYARVNRHDNINRTLKSSIQKAGLNCEEAPRLSTKSN
FT                 RYVPDLICVKQDTAYVIETTIAYESKPISTENAYKLKKEKYNCPDLIEKIK
FT                 QTYHVPKVRVMPFVVGARGSWNDKNDIITNAFKLPRRLRSIICTLALQWGV
FT                 SIHRQFMSTVWRLSKSSGPTNDGRKNYKTRKKS"
XX
SQ   Sequence 3572 BP; 1089 A; 865 C; 728 G; 890 T; 0 other;
     tgggtcgtct gggtttgctc cccattctac ccacgccttc gggcaaacac atttgcacca        60
     aaacgattcg ccaagcctcg gatgccgtcg atcccgagca gtggcgacgg aacaggtgga       120
     ttcaccaccc agagtgattc taatcctctg gttttacccc caacctctga ctctgtgtgt       180
     agacgaagga aagaggtccc tgtgcgatgt ccttcttgtc ttcttgacct ctcagacaga       240
     ccatcgtcaa gtgcatcgca gcatgttcgc agatgcaatg ctccccctct gcagcctgac       300
     ggctatgctt gtgagatctg ttcctcaaaa tttaaaactt atcctggcct gagacagcat       360
     attcgccgag cacacacaca ggagtacaat agttccgatt tacaacttgc acatagtaga       420
     cagaagtctg ctcgccctca gtacactgat ggtgaaatca aatcaatagc atctttcgaa       480
     gccaatatac ctaatcgatc caaattacta tctaaagaaa taaattcaat aatatccaaa       540
     gaaaccgggc gtacaataga cgcaataaag aaactgcgac aacggcaaac ctacaaaagt       600
     tatctaacag aagaactcgc cgctctaaac caatttagac tccgtgatat ttgcccactg       660
     acccccaaaa ttgttctgtc aaagattgat ggcatacctc ctcgttcgtt cgcatccgct       720
     tccggttctc gcacatcaaa cgtatccgat acagtagagt taccgcatga ccaaacccag       780
     gacgtgggtc catcatgtgc aacgatctct tcgagcgaaa tagtgtcagt ccttttgagt       840
     atacgccaag atacaactcc tgagatgtca ttaatcatcg aagccattat tagcaacagt       900
     cctgaaaaga atgtaatcga cttaattgaa aagtatataa ataatatagc taaacccgtc       960
     caccaaaatg caaataagaa gaaacagaga aaactttaca ctaaattgaa aggaaaccgt      1020
     tcaaaaatcc gagccagtaa ttatgcccgc atacagaagt tgtatctcaa aaatcctacc      1080
     caagcagcat ctcatatatt gtctggatct cccatcaata gtcccgagtg tccatcgatg      1140
     tcagaatttg aaaactattt cgagaaaatt tttgcacata aagacatccc tttaaagcct      1200
     ctctctaagc aagtaaaatc tacagttaat atatcacaac ctattggctt tgaagaaatt      1260
     catacacacc taagaaagct taaagagtcc gcccctggca ttgatggtat tacgcgtgaa      1320
     catctgagat cgatgtcacg acctgatctg tatgcgctac taaatataat atggggcatg      1380
     aagtgtctgc cgccagttct acggtccaat cgcacctcgc tgatccccaa atctggaaac      1440
     accagggagc tgaagcagtg gaggccgatt atggtgtcta gcagagtatt aagactatta      1500
     aataaagtta ttgtttcccg tttagaaaat gaaattaaat tgaactatag ccaaagagga      1560
     tttacaaaaa ttgacggtgt catggcaaac aatacaattt tacagacagc catccgcaca      1620
     atgcgaaatt cttcaaaacc tttcataatt ttatccatag accttgctaa ggcattcgat      1680
     cgtgtctcca ttgtctccat cattgacgct ctgtggaggc gtggtgttga tgagcatacc      1740
     atctgctaca ttgaggccaa ctaccgcaac atcacaacga cccttgaatg tcatggaaaa      1800
     cgatcgagac caataaacgt ggaccgcggt gttaagcagg gcgatcctat atctgggttc      1860
     ctgtttaacg tcgtacttga tggactgctt caaaagttgc atgatcagac tggtatccaa      1920
     ataaacggca cgaacatcgc cgcactggct tttgccgacg atatcgtgtt aatggccccg      1980
     acgcctatga tcatgcgcag tcacataaga attgtcgagt catacttcag acgccatggc      2040
     tttgaggtga acgttgaaaa atgcgctaca tttcagtaca taccagttcc tggaaccaaa      2100
     aggcttgtgg ttgaaactaa accactcttc aaaattaatg gcactgatgt tcccaccctg      2160
     aatgtttcct cacagttaaa gtaccttggc ctccaatatg ggtttcgggg tgcaacctgt      2220
     ccaactccat cgaagactga agaaatgtta agccgccttg gtaagagccc tctaaaaccg      2280
     tggcaaaaac taaatgtttt acagcgatat ttgatacccc gtttgcatca cggtatgcaa      2340
     atgatggacg tgaataagaa gaagctgact taccttgatg gctgcattgt caaatttgtt      2400
     aaggaaacgt tgcatctccc gaggacaaca ccaactgcgt ttatacatgc gccccagaaa      2460
     agtggtggcc tgggtattcc atcactccga tttcacattg cgtctatata tttgcgaaga      2520
     ctggagcgga tccagactcg cggcgatagt caggtgcgtg ctgtgttaaa ctcccccgtt      2580
     gtacaggtac tatgtgccaa gcttacaaga atattgggtg gactggatgt tacaacgaaa      2640
     tccgctgtcc agagttactg ggcaaaaaca ttgcacgcta ctgctcttgg agccggactg      2700
     cagaccatgt ccccgggtgt gtcatcctgg atcttccatc ccccggaatt ctggaaaggg      2760
     cgtgactaca ttggcgccat acaactgcgt attggtttac tacctaccaa gggggccccc      2820
     tacatgtctg atacggactg taggaaccct tcatgcgctg gtacacggga gtctctgtat      2880
     catgtcctac agcgatgccc tgtcacgcat tatgcacgcg tcaacaggca tgacaatatc      2940
     aaccgcactt taaaatcatc catacaaaaa gctggactaa attgcgagga agcgccgcgt      3000
     ttgtcaacta aatccaatag atatgtacct gatctcattt gcgtgaaaca agacaccgca      3060
     tacgtaatag aaacgacaat agcttatgaa tctaaaccaa tatccacaga aaatgcatat      3120
     aaactaaaga aagaaaaata taactgtccg gacttaatcg aaaaaataaa acaaacttac      3180
     catgttccca aggtccgagt catgccgttc gtggttggag ccaggggtag ctggaatgac      3240
     aaaaatgata taattaccaa cgcgttcaag ctgccaagga gacttcggtc cataatatgc      3300
     actcttgcgc tccagtgggg cgtttcgatc catcgccaat tcatgagcac tgtatggagg      3360
     ctctccaagt cctcaggacc cacaaatgat ggacgcaaaa actacaagac gaggaaaaag      3420
     tcgtagaggg atctgcacct tatgcaagaa catctgcatt ttcccacaca tagttatgat      3480
     atatatattt aatattaaat ggcctaccag cgggcgcgtc accagctaaa ttcactggac      3540
     aaattgttaa agaggctaaa taacaacggt ac                                    3572
//
ID   R2-1_PBa    repbase;    DNA;    INV; 2681 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from red harvester ant.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2681
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [2] (Consensus)
XX
CC   The 5' end is truncated. It is followed by TAGCCAAATGCCTCGTC in
CC   a 28S rRNA gene.
CC   ADIH01019754 12677-9997.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2360
FT                 /product="R2-1_PBa_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="CLSRILEDGSERTRPSAVEFCDYWRPLMEASSVANGD
FT                 MTGLRELYGEATQEAGASRSHPSRGIHLEGLGEGAAANPGLAADKTSLWDP
FT                 ILATEVARISVRNGTAPGLDGITPRAWNAVPVGLRALVFNLLLLAETAPLS
FT                 ITTTRTVFLEKGGMSDRPGPSEYRPLSIGSVIIRHLHKILAKRLAALDIFD
FT                 ARQRGFRPVDGVCENITVLSSVLGDARRRCKSLHVACVDLSKAFDTVSHAA
FT                 IHRTLEELGLPREFRDYVRAIYAEARTVLQPTGRQRMSPIHVGRGVRQGDP
FT                 LSPLLFNLVVDRALGILSEDVGYRLESRLINALGYADDIVLLSSTKIGLQE
FT                 NLTRLHAAFLQNGLTINANKTGVLSMVASGRDKKVKIDMTPYFTVGGALIP
FT                 QRSPVDVWTYLGGMYQGAREYASVPPLANSIRHITKAPLKPQQRLRLLRDC
FT                 LLPRYYHRWIIGTITSKILKEMDVLLRAAVRRWLRLPHDVPAGYFHAPIQS
FT                 GGLGMPLLKTFIPILKHNRLQRLCRSTLPAACAAAETTYVARQMVWCDNQM
FT                 RVRGNRVTTTAELRQQCAAWLCESCDGGGLREVGSSKLSSHWVSAGADAIP
FT                 GADYVHYHHVRINSLPSRARVSRGRDGRNVRCRAGCPDMETPAHCVQRCFR
FT                 THGGRILRHNDLCRKVGGFLQQKGWQVDAELAYSTSAGRRRPDLTIVKNGE
FT                 AVVVDAQVVSSETALSVSHERKVEKYRSNDDLADRVAEHAGVPRNNVRFTA
FT                 ITISWRGIWSSQSEREMRALGLTSGQLRSLTTRVL"
XX
SQ   Sequence 2681 BP; 584 A; 713 C; 814 G; 570 T; 0 other;
     cctgcttgtc gcgcatactc gaggacggct ctgagcgtac gcgtccgtcc gctgtcgaat        60
     tctgcgatta ctggcgtccc cttatggagg cgtccagtgt tgcgaatggt gatatgacgg       120
     ggctacgtga gctgtacgga gaggcgacac aggaggcggg tgccagccgg agccatccat       180
     cgagaggcat ccatctggag ggcctcggtg agggcgccgc cgcgaaccca ggtttagcgg       240
     cggataagac ctcgctctgg gatcctattc tagcgaccga ggttgcgagg atctccgtaa       300
     ggaatggcac cgcgcccgga ttggatggca ttacgccgag ggcttggaac gcagttccag       360
     tgggccttcg cgcgcttgtc ttcaatctgc tgctcttggc agagacggca cccttgtcga       420
     tcaccacgac tagaacggtg tttctggaaa agggcgggat gtccgatagg cctgggccgt       480
     cggaatatcg acccctgagt ataggctccg tgatcataag acatctgcat aagatcctgg       540
     caaaacgtct ggcggccctt gacatcttcg acgcccgcca aaggggtttc cggccggtgg       600
     acggggtctg tgagaatatc acagtactct cctccgtgct cggcgacgcc cggagacggt       660
     gtaagtcgtt gcatgtcgca tgcgtggacc tgtcgaaagc cttcgacacg gtgtcgcacg       720
     ctgcgatcca tcgcaccctc gaggagcttg gtctcccgag ggaattccgc gattacgtca       780
     gggccatata cgcagaggca cgaactgtgt tacagccgac tggacgccaa aggatgtcgc       840
     ccattcacgt gggacgtggt gtgaggcagg gtgatccgct gtcgccccta ctgttcaatc       900
     tggtcgtaga tcgggcacta ggaattctct cggaggatgt gggttataga ctggaatcga       960
     ggctgatcaa cgcattaggc tacgcagacg acattgtgct cctgtcctct accaagatcg      1020
     gactgcagga gaatttgacg cggcttcatg ccgccttttt gcaaaatggg ctcacgataa      1080
     acgcaaataa aaccggcgtg ctctcaatgg tagcgtctgg cagagacaag aaggtgaaga      1140
     ttgacatgac accttacttc accgtggggg gagcgctgat accgcagaga tccccagtcg      1200
     atgtctggac ctatttaggg ggcatgtatc aaggtgctag ggaatacgcg agcgtccctc      1260
     ctctagccaa ctccatcagg catataacaa aggcacctct gaagccgcaa cagcggctga      1320
     ggttgctcag ggattgtctc ctgcctcggt attatcaccg atggatcata gggacaatca      1380
     cctcaaagat attaaaggag atggacgtgc tgctacgcgc tgcggtgcgt cggtggctgc      1440
     gattgcccca tgatgtgcct gctggctact tccatgcgcc gatacagagt ggcgggcttg      1500
     gcatgcctct gctcaaaacc tttatcccta ttctgaaaca taaccgactg cagcggttgt      1560
     gccggagcac tctgcccgcg gcgtgcgccg ctgccgaaac cacatacgtg gctaggcaga      1620
     tggtatggtg tgacaaccag atgcgcgtcc gtggaaacag agtcaccaca accgccgagc      1680
     tcaggcagca gtgcgctgca tggttgtgcg agtcgtgcga tgggggcgga ctcagggagg      1740
     tcggttcgtc caaactgagt tcgcattggg tctcagctgg tgctgatgcc atacccgggg      1800
     ccgactacgt gcattatcac cacgtacgga ttaacagcct tccgtcaaga gcgagggtct      1860
     cccgaggtcg tgatgggcgc aatgttcgct gtcgcgcggg ttgtcccgat atggagacgc      1920
     cagcgcactg cgttcagcgt tgcttcagaa cgcacggagg gagaatcctg cgacacaacg      1980
     acctgtgtcg taaagtcggt ggtttcctac aacagaaggg atggcaagtc gatgcggaac      2040
     tagcgtactc gacctctgcc ggcagaaggc ggcccgacct gaccattgtc aagaatggtg      2100
     aagcagtggt cgttgacgcg caggtggttt ccagcgaaac cgcgttgagt gtgtcccacg      2160
     agcggaaggt ggagaagtac cggtcgaatg atgatctagc ggaccgggta gcggaacacg      2220
     caggagtgcc gcgtaataat gtacgtttca ccgccattac aatatcatgg cgaggaatct      2280
     ggagctctca gagcgaacgc gaaatgcgtg ccctcggcct aacatccggc cagcttcgct      2340
     ctttaaccac aagagtcctt tgaggctcat ggatgaactg gcggagattc aacgaattac      2400
     atctcgttac agtgtcagat ggaggccaac atcgacggtg gtgcgtaact gccggtattc      2460
     gctggctccc ccgcacaagc cccggcagtg tgaatgcttg atgattgtgt gttgctactt      2520
     agtaagggtg agagctgccg gtcagctcct atgtagcact atccaaggtg tactgtgcta      2580
     gaaaacacca tatagtaaag taatattgcc ttgcaatatc agagtcctgc gagggcggcc      2640
     cgcgcatata ttgcgggtcg cacagcacat tctgacacaa a                          2681
//
ID   R2-1_PPap   repbase;    DNA;    INV; 3689 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from sand fly.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_PPap.
XX
OS   Phlebotomus papatasi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Psychodoidea; Psychodidae; Phlebotomus; Phlebotomus.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 3' end is uncertain. It follows GCGGGAGTAACTATGACTCT in a
CC   28S rRNA gene.
CC   AJVK01060896 33-3721.
XX
FH   Key           Location/Qualifiers
FT   CDS           226..3348
FT                 /product="R2-1_PPap_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="METNRENIYSRDEAGVNSLGSRPQMRPRSQTMERSIV
FT                 EAGCDQNEFGCDLCDRRFRTTRGLGQHFRHSHPREHNDRLNTDRIKARWSP
FT                 EEEYLLALEEVRATSRGIRFLNQHLAEAFPNRTIEAIKCHRRQRTYKELVA
FT                 NLLVRASSARESQTSYAGRLGETSSSVSAELVVEVNRLIDYLAIHPVRKYF
FT                 SDELVAAAHAAIIGDVECDELILSWLQKAFRIRHGLRPSTSTAAGNPGSYR
FT                 SGSDRPLSNRKRRRQDYARVQRLWNKSVKKAARGILEGSDEANSGESVHPT
FT                 PERMLRYWSDIFKQEGPIIPDRTNQSPRNEELKDMWEPITIDEVKLARLDP
FT                 GSAAGIDRISVQQFQRCPVHVRVLLFNVLLLVGHLPGRMSCARTVFLPKVE
FT                 GSSDPKDYRPISITSVITRQFHKILAARLTSMHAWDERQAGFLPVDGCGEN
FT                 LAILNELIRFSRVNRRELHLASLDISKAFDMVPRQAIINSVAQLGAPQNLV
FT                 EYLKGLYANNQTTLEYGGSELYCRVKRGVRQGDPLSPLLFNLVMESALVRL
FT                 DKKLSFSLYGVSVNGLAYADDVILVASTSGGLQKNTESFLGALREIGLDLN
FT                 LAKCKSLSLKPSGRDKRCKVLSESQLSIGGTSVPQVDLVGFWRYLGIWFSG
FT                 PRVVSPEQLSMGVYLERISKAPLKPQQRIRILVDYLLPKYTHGSVLGRYTR
FT                 KTYKAMDAQIRSYVRKWLHLPLDTTLGYFYAPVMSGGLGIPNFEMTVPLMK
FT                 VERNRKLLSSARGTIRAVMHGSPLIRDTERTASWLLTRLPALDIECYKGYW
FT                 IKSLYESSDGRDNRAINGVRGSIGWSRKFSNKLTGRDFVHFHQIRINALDS
FT                 KARTLRGRGVDVRCRAGCLDRETPYHIVQRCFRSHGGRVLRHDNSVQLLCS
FT                 EMTRKGYNVAVERQLQTVEGMRKPDLIAVKDGRAAVIDMQVVSGGSMESSH
FT                 REKVEKYQRIPGYTELVKEAFGVASVEYRAATISWRGIWFKPSYDSLTRLG
FT                 VGERCLGSICCQVMRGSYLNFVRFKQSTQMVWSAV"
XX
SQ   Sequence 3689 BP; 973 A; 766 C; 994 G; 956 T; 0 other;
     aactatgacg tatgttatag ggagttttat tagttaaggt tgggtgcgtg gagtcggatc        60
     gttgaagtct tcattgacct aaatgtatcg ttgaccatcg tagcccttca agtgtccatc       120
     tgacgccccc tcatggcgac cgctggggat tgctttcgag catgagctaa gagcagtgga       180
     tgcgggggtg gtacaggcgt atcaccctta aaaagaaagt cgatcatgga aacgaataga       240
     gaaaatatat acagcagaga cgaagctggc gtaaattcgt tagggtctcg tccacagatg       300
     aggccccgat cgcagacaat ggagcgtagc attgtcgagg ctgggtgcga tcagaatgag       360
     tttggatgcg atctatgtga tcgtaggttt agaaccacga gaggtctggg tcagcacttc       420
     aggcactctc acccacgaga gcacaacgat cgattaaaca ccgatcgtat aaaggcacga       480
     tggagtccgg aggaggaata cctattggca ctggaagaag tgagggcaac ttccagaggt       540
     atacgtttct tgaatcagca tttggctgaa gcgtttccca acagaacaat tgaagcaatt       600
     aaatgtcata ggcgacaaag aacatataaa gagctggtcg caaatctact tgtgagggca       660
     agtagcgcga gggaatcgca gacgtcatat gcaggaagat tgggagaaac atcctcctcc       720
     gtgtctgctg aattagtcgt tgaggtcaat cgtttgattg attatctcgc tatccaccca       780
     gttcggaagt atttttctga tgaactagtg gcagcagctc atgccgcaat aataggggac       840
     gtggaatgtg atgaactcat tttgagttgg ttgcagaaag cattccgtat taggcatgga       900
     cttcgcccat ctaccagtac ggcagctggg aacccaggtt cgtacaggtc tggtagtgac       960
     cgcccactaa gtaatcgaaa gcggcgacgc caagattacg caagagtcca acgattatgg      1020
     aataaatcgg tcaaaaaagc agccagaggg atccttgagg gttccgatga ggccaattca      1080
     ggagagtcgg tacatcctac tcctgagaga atgcttagat actggagtga tatctttaag      1140
     caagaaggac cgattatacc tgatcgtacc aaccaatctc ctcgtaatga ggaattgaag      1200
     gacatgtggg agccgatcac gatcgatgag gtcaaattgg ccagactcga tccgggatca      1260
     gcggcaggca ttgataggat ttcggtccag cagtttcaaa gatgtcctgt acatgtgcga      1320
     gtactgttat tcaatgttct attgctggtt ggtcatttgc caggacgcat gtcttgcgct      1380
     cgtaccgtat ttctaccaaa agtagaaggt tcgagtgacc ccaaagatta ccgtccgata      1440
     tcgatcactt cggtaatcac tcggcaattt cacaagatcc tagctgctag actcacgtca      1500
     atgcacgcat gggacgagag acaggcaggt ttcctgcctg tggatgggtg cggcgagaat      1560
     cttgcgatcc tcaatgagct catccgtttc tctcgtgtga accgcagaga attgcatcta      1620
     gctagtctag atataagcaa ggcatttgat atggtcccta gacaggccat tatcaactct      1680
     gtggcacagt taggggctcc ccagaactta gtggaatatt tgaaaggatt gtatgccaac      1740
     aatcagacca ctctagagta tgggggttcc gagctgtatt gtcgggttaa aaggggtgtg      1800
     cgtcagggtg atccactctc acccttactg ttcaacctgg tgatggaaag tgcacttgtc      1860
     cgccttgaca agaaactttc gttctctcta tatggtgtga gtgtcaatgg gctggcatat      1920
     gccgacgatg tgattctggt tgcttcaacc agtggtggtc tccagaagaa caccgagtct      1980
     tttcttggtg cgcttaggga gattgggctt gacttgaacc tagccaaatg caagagctta      2040
     tcacttaagc cctcgggccg ggataagaga tgcaaggttt tatctgaatc ccagctttct      2100
     attggtggta cttcggtccc gcaagtagat ctggttggtt tttggaggta cctcggcata      2160
     tggttcagtg gcccaagggt ggtgtcgcca gagcaattat cgatgggggt atacctagag      2220
     aggatatcca aagcgccgct aaaaccccag cagcgcattc ggatattagt agattatcta      2280
     ttgcccaagt atacacacgg ctctgtactt ggtcggtata cccgtaaaac ctataaggcc      2340
     atggatgctc aaatccgttc gtatgttcgg aaatggttac accttccctt ggataccacg      2400
     ctggggtact tctatgctcc tgtaatgtca ggcgggcttg gtataccaaa ttttgaaatg      2460
     actgttcctt tgatgaaggt cgaaaggaat cgaaagctct tgtcaagtgc aagaggtacg      2520
     attcgggcag taatgcacgg gtcgcctctt atacgggaca ccgaaaggac ggcttcatgg      2580
     cttctgacta ggctaccggc acttgatata gagtgttata agggctattg gataaaatcc      2640
     ttgtacgaga gttcggacgg gcgtgacaac cgtgcaatca atggtgtcag aggttccata      2700
     ggttggtcac gtaagttcag taataaatta acaggacggg acttcgtaca cttccatcag      2760
     ataaggatca atgcccttga ttccaaagca cgtacactcc gtggtcgagg tgttgatgtt      2820
     cgatgtcgag cggggtgtct tgatagagag accccatatc acattgttca gagatgcttt      2880
     cgttcccatg gtggcagggt gctccgtcat gataactccg tccagttatt atgttcggaa      2940
     atgaccagaa aaggatacaa tgtagcggtc gaaagacagt tacagacagt tgaaggtatg      3000
     cgtaagcccg acctcatcgc agttaaagat ggaagagctg cggtgataga catgcaggta      3060
     gtctctggag ggtcgatgga gtcaagccac cgggaaaagg ttgagaaata tcaaaggatt      3120
     cccggataca ctgagctggt aaaagaagct ttcggagttg catctgttga atatagggct      3180
     gcgaccattt catggcgcgg catctggttc aaacctagtt atgattccct aaccagacta      3240
     ggggtcggtg aacgttgcct tggtagcatt tgttgccagg taatgagggg atcgtatcta      3300
     aactttgtac gattcaaaca gagcacccag atggtatggt ccgctgtgtg acctacggcg      3360
     aagtttgcgg cgttaccatt ctgggtgcta agactgaaca aggcattgat gggttccatt      3420
     gtctaaggtt gcttttatat tgaggtgtgc cgtcgagcac ctggtagcat tcattcttat      3480
     gggcgaaaga atgataaata tgatgatcgc gagatcatga tccactttct tggcgtaatg      3540
     tggaaagtct agcatggtaa tggggtaaag ttgggtctct gatccaggct atacctatga      3600
     tgagaaaccc tagttcactt gctcaattct atttgtcgta agacttatgg aaataagtga      3660
     caaaacgatc tagactattt ctgagggta                                        3689
//
ID   R2-1_RPr    repbase;    DNA;    INV; 3436 BP.
XX
AC   .
XX
DT   04-JAN-2013 (Rel. 20.10, Created)
DT   04-JAN-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   R2 non-LTR retrotransposon sequence.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K. and Jurka J.;
RT   "R2 non-LTR retrotransposons from Arthropoda, Chordata,
RT   Hemichordata, Platyhelminthes and Ctenophora.";
RL   Repbase Reports 15(10), 3502-3502 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is uncertain. It is followed by TAGCCAAATGCCTCGTCATC
CC   in a 28S rRNA gene.
CC   ACPB02022068 3739-7174.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(310..657,557..2899)
FT                 /product="R2-1_RPr_1p"
FT                 /translation="MATDPMHSTAEFDRDINVDRVRRRWSVEELQVLAGWE
FT                 ARLVREGGGEGLVQRLVCCMRDRTVDSIKGVRKREDYRRMVCMLLSADAAE
FT                 GRIGAERCNREVVGAGERQRRYWLYKRCARMLQRGGLARRGAIGRWLGREK
FT                 GREGIGCTRGVSGAGPDGTNSGMVVESSVAERVGVAQSGTHSSRRLRRRQY
FT                 APVQELWKRDRRTAINRVLGGGRDLGGHTLQEITDYWGPVFEAPSTPWSGD
FT                 VGRTDEGWTAAEIFAPVDNVELETTLIPKVPRPPVPGDYRPLTITSVIVRH
FT                 FHKLLAGRLSALCKHEPAQRGFVSGVDGVGDSMVRLNAIMRKVWQSRRALS
FT                 MVSLDVAKAFDSVSHVAIVRLLGMRGAPPVFVRYVESCLARSSLRIRWRGQ
FT                 RSRVIRVMRGVRQGDPLSPFLFNLVMDRVLSGLPERVGFRIGTPGRRINAM
FT                 AYADDMLLFASTEVGMRLLLMTAEASLADCGLGVNSAKSWSLSLIPSGRQK
FT                 LIKVDTSAVFRLGGLELPAIGVADSFGYLGVRFGPSGVLEAEPCLLEKLDC
FT                 IQRAPLKPQQKMEALRDFVLPGVFQELVLGRLKKTSLSRWDVSVRGHVRRW
FT                 LHLPHDVPNTYIHAPFKYGGLGVAELSKLVPVWRRIRRERVMAGWGEDEAE
FT                 ELGDGVREFGGFESVEAVRQAQKEELCGKVDGSDLKESEAVRASYSWKGLR
FT                 AAALSGREYVQFVRLHAGCLPSATRTARGRCDQGGSPCWVGCQLPETVAHV
FT                 IQLCPLTKGGRILRHHAVVRLLAGSFERRWFGVYREVVMGLDGACVRPDLI
FT                 VTRGSRAWIVDVQIVSPGDCMGTINQAKIRKYDTPPIHEAARALTGKLDIG
FT                 VVAVTVTWKGIWCSRSARDLREMGVTKLVLEWITERVLRGSHMN"
XX
SQ   Sequence 3436 BP; 719 A; 628 C; 1192 G; 897 T; 0 other;
     ttaggatata tatttttatg taatatacct tcaactacat atttactacc aatcccagcg        60
     aaaccaacta acgaatgcca attaccagtt gttataaaat ctttaccaaa ttgttttatt       120
     gctttcgcat cacttacatg aatatcatca aatgaacgtg cacgttcata taataaatca       180
     tgttccatag caatacgatc atcagcatca attggccgtt gtgtgtaatc gctaggacca       240
     ggaccgaaaa aattatgacg tgtcccgggt ggaagaggtc agttgaggcg agagtcaagt       300
     caatcgacta tggccactga cccgatgcat tcgaccgcgg aattcgatcg agatataaat       360
     gtggaccggg taaggcggcg ttggtcggtg gaagagttgc aggtattggc cgggtgggag       420
     gctagattag tgcgggaggg aggtggcgag ggactggtcc agcgcttggt gtgttgtatg       480
     cgtgatcgga cggtagatag catcaaaggg gttagaaaga gggaggatta ccgtcggatg       540
     gtttgtatgc tgttgagcgc ggatgctgca gaggggcgga ttggcgcgga gaggtgcaat       600
     agggaggtgg ttggggcggg agaaaggcag agaaggtatt ggctgtacaa gaggtgttag       660
     tggcgcggga cccgacggta caaattctgg aatggtggta gagtctagcg tcgctgagag       720
     ggttggtgtg gcgcagagcg gtacccattc atcgcgacga ttaaggcggc ggcagtatgc       780
     gccggtccag gagctgtgga agcgtgaccg caggacagcg attaatcggg tgctgggggg       840
     cggtagggat cttggtggcc acacgttgca agaaatcacg gactattggg ggccagtgtt       900
     tgaggctccg tcgacgcctt ggagtgggga tgtagggagg actgatgagg gatggacagc       960
     ggcggaaata tttgctccgg tggataacgt agagttggag accacgctga tccctaaggt      1020
     gccgcggccg cccgtacctg gtgattatag gccattaacg atcacttcgg tgattgttag      1080
     gcattttcat aaattgttgg cgggtaggct gagtgcccta tgtaagcatg agccggcgca      1140
     gcggggtttt gtgtccggag tggatggagt tggggattcc atggtcagat tgaatgcgat      1200
     catgcggaag gtttggcagt cgaggcgtgc gttgagtatg gtgagccttg atgtggccaa      1260
     ggcttttgac agtgtcagcc acgtggccat tgtgaggttg ttgggtatga ggggggcccc      1320
     tccggtgttt gtgagatacg tcgaatcctg tttggcgcga tcctcgttgc ggataagatg      1380
     gcgtggtcaa agatctcggg taatcagggt aatgaggggt gttagacagg gtgacccgtt      1440
     gtctccgttt cttttcaatc tggtcatgga ccgcgtgctg agtgggctgc ctgagagggt      1500
     tggctttcga attggtacgc ctgggcgtag aattaacgcg atggcatacg cggatgatat      1560
     gttactattt gcctcaacgg aggtcggtat gaggctatta ttgatgacgg cggaggctag      1620
     tctggcggac tgtgggctgg gggtcaattc ggcaaaatcg tggtctctca gtctgattcc      1680
     atcaggcagg cagaagctga tcaaggtgga tactagcgcg gtgttccggt tggggggctt      1740
     agagctccct gctatcgggg tggcagatag tttcggatac ctgggggttc ggtttgggcc      1800
     gtctggggtg cttgaggcgg agccgtgttt gctcgagaag ctggattgca tacagcgggc      1860
     cccattgaag cctcagcaga agatggaagc gttacgagat tttgtcctgc cgggggtgtt      1920
     ccaggaattg gtgctggggc gtttgaaaaa aacaagcttg tccaggtggg acgtgagtgt      1980
     gcgggggcat gtgcggcgtt ggttgcatct gcctcatgat gtcccgaaca cgtatatcca      2040
     cgccccgttt aagtatggtg ggcttggggt ggctgagctg tcaaagctag tgccggtttg      2100
     gaggaggatt cggcgtgaga gagtaatggc tggatggggg gaggatgagg cggaggagct      2160
     gggcgatggg gttagggagt ttggaggctt cgagtcggtg gaagcggttc ggcaggcgca      2220
     gaaggaggaa ctatgcggta aggtggatgg tagtgatctg aaggagtccg aggcggtaag      2280
     ggcttcgtat agttggaaag gactgcgtgc ggcggctcta tcgggacgag aatatgtcca      2340
     atttgtccgt ctacacgcgg gttgcctgcc gagcgcgact cggacggcta ggggtaggtg      2400
     tgatcagggc ggttccccat gttgggtggg gtgtcagctg ccggagacgg tggctcatgt      2460
     tattcagcta tgcccgctta cgaagggggg gcgtattttg cgccatcacg cggtggttcg      2520
     gctgctggcg ggctcttttg agcggcggtg gttcggggtc taccgcgagg tggtgatggg      2580
     gctcgatggt gcgtgtgtcc gcccggattt aatagtgacg agaggcagta gggcatggat      2640
     tgttgacgtt cagatagttt cgccggggga ttgtatgggg actattaatc aggccaaaat      2700
     aaggaaatat gatacgcctc cgatccatga ggctgcgagg gcgcttacgg gcaagctgga      2760
     cattggtgtg gtggctgtca ctgtgacgtg gaagggaatt tggtgcagca ggtcggcgag      2820
     ggatttgcgt gagatgggtg ttactaagtt ggtgttggag tggataacag agagggtcct      2880
     cagaggttca catatgaact agacgcgatg gaatgctttg aggcgcgggt cggtcagctg      2940
     aggtgggtaa gggagggtat gggcgtattc tctgggagcc gggtgatgga tgcggctagg      3000
     gagcactcca ctttccacat cggagagtgt caggttgatc cgcttgcgga tccgtctttg      3060
     tcggccatat aaggccttgt tgggcgtaga gccgcccgtg tgtgcgaggt cgcacttatt      3120
     gcgtttccga atggcttaat ttggggtctg attccctgca tgggtggatt ctttattatc      3180
     tcattctgta aatagtttga acaagtgctt gagccgttca agggctatgt gtctatgacc      3240
     atcaccgtat gttttttttt tcttttgtta agtattggtt acttttggtt gtataattta      3300
     aaggccaaat tggtcctcaa agtaattgtt cacttttgtt tatctcttgc tggaaatgat      3360
     ttgtatttac taaattaagc tattagaatg ttatgtacag attgtaatat gaattagctc      3420
     aaataaattt tgtcaa                                                      3436
//
ID   R2-1_TCas   repbase;    DNA;    INV; 4155 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from red flour beetle - consensus -.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-1_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4155
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   This retrotransposon is inserted into the same sites as other
CC   R2.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine:
CC   Tribolium castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(174..1880,1814..4000)
FT                 /product="R2-1_TCas_1p"
FT                 /note="CCHC and CCHH zinc fingers, reverse
FT                 transcriptase and restriction-like endonuclease."
FT                 /translation="MSRRPGKSNEPPVRSRAMGLTTLSGTKTSNSGAQGPS
FT                 TSAPMQNMAGGFVCDCGRSYALKTSLARHKKECGKNNAECRWCGTRFNTLA
FT                 GTRQHERKAHFVQYQSDLAKALPQPESELMEKIAIVEARSXNGIFYKEMMA
FT                 STGLTHQQVRSRREKPEYKGFLERARRSLAQTNIRAGSISPASTXAGSLES
FT                 ASPKAGCSSSASPGPTTRSRAPTKGVPXRSSNSARIVVEAQVHTRAPPNTG
FT                 ETEVALRESRRTVPRLGXNPSRPCGISPLMAIAIDEDSVLGGLRVQAGPSP
FT                 TAVHSVEAFPGTSSMTPMETDRVHNKSGIDPILEHNGTRQVRREESSTRED
FT                 PVEQWSPNYPKTPVTMPNITTTADAXXTSYNRTPQTLPGNRRRRSRSLPPV
FT                 QRKSASDXLESVDSLGPWAVFLQDQVDAGSLSGNDSLADLVRVALTKSDRG
FT                 VLNDAVNRYLAQRAESLRIRKRGSKGKRKSKTGRHYGQTTSGSGQRAALFK
FT                 KHQDLFLKNRRGLAETILSGKEDFGPRPEPPVTSVEEFYGGIFESPSPPDN
FT                 EPFEVRATGVEDPPPLTSPWTKRTLRSPCYWRRRPPPTYITMDEIKAARAG
FT                 WQISAPGSDQIPVAAVKTMSELELAILFNIILFRNVQPSAWGVLRTTLVPK
FT                 DGDLRNPANWRPITISSALQRLLHRVLAARLSKLVSLSSSQRGFTEIDGTL
FT                 ANALILHEYLQYRRQTGRTYXVVSLDVRKAFDTVSHCSVSRALGRFGIPSV
FT                 IREYILATFGAQTTIKCGSVTTRPIRMLRGVRQGDPLSPVLFNLVMDELLE
FT                 KVNEKYEGGSLQSGERCAIMAFADDLILIADRDQDVPAMFDDVSTFLERRG
FT                 MSVNPAKCRALIAGAVSGRSVVRTGSSYKIHNTPIPNVDALDAFKYLGLEF
FT                 GHKGVERPTIHNLSVWLNNLRRAPLKPDQKCLFIRQYVIPRLLYGMQNPQV
FT                 TSRVLREADRLIRRHLKTYYHLNVHTPDSLIHASVSDGGLGIMELRKAIPR
FT                 IFLGRLVKLLNKNKDSVLSSVLQSNRVRTLMGKLSTMAGEVPESTFWRNQI
FT                 ASGPLSKGLEQAAEDSASRLWISEKPSGWSGRDHVRAVQLRTGNLPTKAIP
FT                 SVPVGQRRCRHGCACDESISHVLQMCPLTHADRIRRHDEVVKKVARHCTSR
FT                 GWTVEVEPHIRSRCGRLFKPDLAVHQPGGAIVIADVQVSWDSESLTVPYER
FT                 KRAKYDVPQFHQAAQHAWPGKALTFAPVIVGARGIWPRINNDRSAALQIPP
FT                 VVRRACVNSVVKWGSSIHATFMRSVWANRLNPRPLRA"
XX
SQ   Sequence 4155 BP; 974 A; 1109 C; 1142 G; 916 T; 14 other;
     agtcatagag ccagaacctc ctcgtggtcc cgctgggcac agggattaat ttttctgtgg        60
     caaatttgac tggcttcaga gagcgttttt cgaagtggwc tgtgtgactg cgttcccccc       120
     ttagttgcta twtccgctkm gattaacatc tcacctcgac gtwtaagatc attatgtcga       180
     ggcgcccggg gaagtctaat gagcccccgg ttcgtagtag ggctatgggt ttaaccactt       240
     tatctggcac caagacatca aattctggtg cccaggggcc ctctaccagt gcccccatgc       300
     agaacatggc tgggggtttt gtttgtgact gcggccggag ctatgccttg aagacatctc       360
     tggcccgaca caagaaggag tgcggaaaga acaatgcgga gtgtcgatgg tgcgggacaa       420
     ggtttaacac cttggctggc actcgtcagc atgagcgaaa ggctcacttt gtccagtatc       480
     agtctgatct ggcaaaggcg ctcccccaac ctgagtcgga gcttatggag aaaatcgcca       540
     ttgtggaggc caggtccakt aacggcatct tctataagga gatgatggcc tccacgggtc       600
     tgacccacca acaggtcaga tcaaggagag agaaacccga atataagggc ttcctggagc       660
     gagcacgcag gagcctggcc cagaccaata tcagggctgg ctccatctca ccagcgagta       720
     cgawcgcagg ctctttggag tctgcgtctc cgaaagcggg gtgtagtagc agtgcctcgc       780
     ccggaccgac caccaggtcc agggcaccta ccaagggtgt gccccwacga agctctaatt       840
     cggcgagaat tgtggtggag gcccaagtcc atacccgggc gccacccaat accggggaaa       900
     cggaagtggc tcttcgtgag tcacgccgaa ccgtgccccg gctcgggcmt aatccatcta       960
     ggccctgtgg tatctctcct ttgatggcga ttgccataga tgaagactct gtgttgggcg      1020
     ggctacgagt gcaggccggg ccaagtccca ccgcggtgca ctccgtcgaa gctttccccg      1080
     gaacgtcctc gatgaccccg atggagaccg atcgggtaca taataagtcc ggtatagacc      1140
     ccattctcga acataatggg acacggcagg ttcgaaggga ggagtcttcc acacgggaag      1200
     accccgtcga gcaatggtct cccaactatc ctaaaacgcc tgtcactatg cccaacatta      1260
     caactactgc tgatgctwcg tkcacctcgt acaaccgaac acctcagaca ctccctggaa      1320
     accggaggcg acgcagtcgc agtctaccac cagtgcaacg gaaatccgct tccgacgawc      1380
     tcgagtccgt tgattcgctg gggccctggg cggtcttctt gcaagatcaa gtagacgccg      1440
     ggtcactaag cggcaacgac tcgctggcgg atctggtgag ggtggctctc actaagtccg      1500
     atcgcggtgt ccttaatgat gccgtgaatc ggtatctggc ccaaagggcg gagagcttga      1560
     ggatacgtaa gcgaggcagt aagggcaaaa gaaagagtaa gactggtcgc cactatggcc      1620
     aaacaacatc tggcagtggt caaagagctg cgctctttaa aaagcaccag gacctctttc      1680
     tgaaaaacag gcgaggattg gcggagacta tcttgtcggg gaaggaggat tttggtccta      1740
     gacctgaacc tcccgtaaca agtgtggaag agttctacgg cggcattttc gagtcgcctt      1800
     ctcctcccga taacgaaccc ttcgaagtcc gtgctactgg cgtcgaagac ccccccccac      1860
     ttacatcacc atggacgaaa taaaggcggc aagagccggt tggcagattt cagcgcctgg      1920
     atctgaccaa ataccggtcg cggccgtcaa aactatgtcc gagctggaac tggcgatact      1980
     gttcaatatt atattgttca gaaacgtcca gccttcagcc tggggggtac ttcgtacgac      2040
     gctggttccc aaagatgggg atcttagaaa tccggccaac tggcggccca ttacwatcag      2100
     ttctgccctg cagcgtcttt tgcatagagt attggcggcc cgtctttcga agttggtctc      2160
     gttgagttcg tctcagcggg gctttaccga gattgacggt actctagcga atgcgctgat      2220
     actgcatgaa tatttgcagt atcgcaggca gactggccgc acctaccasg tcgtgtctct      2280
     ggacgtcaga aaggcgtttg acacggtttc ccactgctct gttagtagag ccctgggtcg      2340
     ttttggtatc ccctctgtta tcagggaata catcctggcc acatttggcg cacagacgac      2400
     cataaaatgt gggagcgtta cgacaagacc gataaggatg ctccgtggag tgagacaggg      2460
     tgaccctctt agcccggtcc tattcaatct tgtgatggat gagcttctgg aaaaggtcaa      2520
     tgagaaatac gagggcggct cactgcaaag cggcgaacgc tgtgccatca tggcgtttgc      2580
     tgacgacctc atcctgattg ctgaccgaga tcaggatgta cccgcaatgt tcgatgatgt      2640
     ttcgacattt ctcgagcggc gcgggatgtc tgtcaaccct gccaagtgca gagcgttgat      2700
     tgcgggcgcg gtgagcggga gaagtgttgt gaggacaggc agctcttata agatccataa      2760
     cacgccgatt ccaaatgtcg acgccctaga tgcatttaag tatctggggc tagaatttgg      2820
     ccacaaaggc gtagagcgcc ccacaatcca caacctctcc gtctggctta acaacctcag      2880
     acgagcccct ctcaaaccgg accaaaaatg cttattcatc cggcaatatg tcatccctcg      2940
     attgctctac ggcatgcaaa atcctcaagt tacctctagg gtacttcgag aagctgaccg      3000
     tctgataagg agacacttaa agacatacta ccatcttaat gtccatactc cagattctct      3060
     tattcacgcg agtgtgagtg acggaggtct gggtataatg gaattgcgta aagcaattcc      3120
     aagaattttc ctaggacggc tagttaagct tctcaacaaa aacaaagatt cggtcttaag      3180
     ttcggtcctg cagtctaacc gtgtgagaac actaatgggc aaattatcaa ccatggcggg      3240
     tgaagtaccg gagtcgacgt tttggagaaa tcagattgcc tcgggtcccc tttcgaaggg      3300
     tctcgaacag gcggccgagg actccgcaag tcgactctgg atcagcgaga aaccttccgg      3360
     ttggtcgggt agagatcatg tccgtgcagt ccaacttcgc acgggcaacc tcccgaccaa      3420
     agccattcca tcggtgccgg ttggtcagag acgctgcaga cacggatgtg cctgcgatga      3480
     atcgatatcg catgtgctgc agatgtgccc cctgacgcac gctgatcgga ttcgcaggca      3540
     cgatgaagtg gttaagaaag tagcccgcca ttgcacctca cgcggttgga cggtggaagt      3600
     cgagccacac attcgctcta ggtgtggtag gctttttaag cctgacctgg cagtccatca      3660
     gccaggcggc gccattgtga tagcggatgt ccaggtatca tgggattccg aaagcttgac      3720
     ggtaccttac gaacgcaagc gagctaagta cgacgtgccc caattccatc aggcggcaca      3780
     acatgcatgg ccgggtaagg cacttacgtt tgcccctgta atagtgggcg cccggggcat      3840
     atggccccgg ataaacaacg accgctctgc ggcgttgcag attcctccgg tcgtgcgacg      3900
     agcttgcgta aattcggttg tcaagtgggg gtcgtcgatc catgctacct ttatgaggtc      3960
     agtatgggca aatcgactca acccccgacc cttaagggct tgaaaagagt ggcagttgtg      4020
     gagacttcct tcggacgtcg ggtcggattt tcggacgcca gggtacctcc accgctgggt      4080
     tcacaaacta ggcgaacatc tgccgatacc ctctttaggt cataggacca catgtctctg      4140
     cacgagatta accca                                                       4155
//
ID   R2-2_APi    repbase;    DNA;    INV; 2161 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from pea aphid.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2161
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   5'-truncated. It is between CCTAAGTGTCCGGGCAACTA and
CC   TAGCCAAATGCCTCGTCATC in a 28S rRNA gene.
CC   Based on ABLF02008889 and ABLF02012459.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1915
FT                 /product="R2-2_APi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="RPISIASIAIRHYHRVLAKRLEKVSLVDSRQRAFRCA
FT                 DGVAENLFLLESVLKDVRKAVKGLCLASLDLSKAFDSVSHQSIASAMRGVG
FT                 LDPRFVEYIRGTYRRSETVIQVSGQSSRGIRPRCGVRQGDPLSPLLFNLVV
FT                 DTGLRAIPEAVGYTLGRTVVNAIAFADDVILVAERPAGLRRACEAFTRQLE
FT                 VAGLRVNPAKCATLTMIPSGRDRKVKTVGELYSLGGVTLPTLDVASLWKYL
FT                 GVSFAGSRIDVFDSAAYVTALNRISSEPMNAQMRLAIARDYLVPKFVHGLT
FT                 FGVTNVRRLRCLAHETRRAVRRWLDLPTSCPNSYIHSPTSAGGLGIPDFTR
FT                 FVPKNRVKRLTRLENSELPAVREAFGLHGKTALVVARRALEAHRLKPSHMQ
FT                 DLYASVDGSELKLCSEEPASVAWLRRPHGIPSSDFKDYARIRINALPTRKR
FT                 VNRGKAGLTRCRACGLMEETLAHVSQTCQRTHDGRIQRHDCLVKSITGGLR
FT                 DKKYEVECEYLYKLHGGNMKPDIVATISDDTRGRISVICDVQIVSGSGPKT
FT                 WHSNKVDKYADRADLKAAIRARHLSTDVQTVAATLTWRGVWVPESFRELGE
FT                 LGLIRGLLEGLVTRVLKGTQLNWSTFNQRNLAHHSRTGVG"
XX
SQ   Sequence 2161 BP; 460 A; 593 C; 626 G; 482 T; 0 other;
     ccggccgatc tcgatcgcgt cgatagccat ccgacactac caccgagttc ttgctaagcg        60
     cctggagaaa gtgtctctag tggactcacg gcagcgtgca ttccgatgcg cggacggcgt       120
     ggcggagaat cttttcctcc tcgaatccgt actgaaggat gtccgcaagg ccgtgaaggg       180
     cctgtgtctt gcgtccctcg atttatcgaa ggcgtttgac tcagtgtccc accagtccat       240
     agcttccgca atgcggggcg tgggtcttga cccgcgcttc gtggagtaca ttcgcggaac       300
     gtaccgtcgc tcggagacag tcatccaggt aagcgggcag agctcgaggg gcatcaggcc       360
     acggtgtggc gttaggcagg gggacccctt gtccccgctt ttatttaatc tggtagtgga       420
     cacaggtcta cgagcaatac cagaagccgt gggctacact ctaggtcgta ctgtagtgaa       480
     cgcgattgcc tttgcggacg acgtgatttt ggtggcggaa aggccagcag gattacgacg       540
     ggcgtgcgaa gccttcacta ggcagttaga ggtagccggt ctcagggtga acccagcgaa       600
     gtgtgcaacg cttaccatga ttccttcggg aagagaccgt aaggttaaga ccgtcggtga       660
     actatactcc ctcgggggtg taaccttgcc gacactcgac gttgcgtcgc tctggaagta       720
     tcttggtgta tcgttcgcag gtagtcgaat cgacgtgttt gacagcgcgg cgtacgtaac       780
     ggcgttgaat cggatctcct cggagccgat gaatgcgcag atgcgactcg ccatcgcacg       840
     agattacctc gttccgaagt tcgttcacgg actgacgttc ggggtaacga atgtacgtag       900
     gttacggtgt ctcgctcacg agacgcgtcg cgcggtcaga cgctggttgg acttacccac       960
     ttcgtgccca aactcgtaca tacactcgcc aacatcggcg ggtggcttag gtattccaga      1020
     ctttactcga ttcgtgccca aaaatcgcgt taaacggctc acaaggcttg agaactctga      1080
     actcccggcg gtccgcgagg cttttgggct tcacgggaag accgccctgg tggtcgcccg      1140
     ccgggcattg gaggctcacc gtctcaagcc gagtcatatg caggacctct atgcgagcgt      1200
     tgacggctcg gagttgaaac tatgctccga ggagccggcg tccgtcgcgt ggctccgtcg      1260
     tccgcacggc ataccgtcgt cggacttcaa agactacgcg cggataagga taaacgcttt      1320
     gccaactcgc aagcgtgtca accgcgggaa agccggcctg accaggtgtc gggcctgtgg      1380
     actcatggag gagacgcttg cccatgtctc gcagacttgt caacgcacgc atgacggccg      1440
     catacagcga catgattgcc ttgtaaaaag cattacaggt ggtctgcgtg ataaaaagta      1500
     cgaagtcgag tgcgaatacc tctataagct gcatggcgga aatatgaagc cagacatcgt      1560
     cgcgacgata agcgacgata caagaggccg tatttccgtt atatgcgatg tacagatagt      1620
     ttctggctcc ggaccgaaaa cttggcactc taataaggtc gacaagtatg ccgaccgagc      1680
     ggatctaaaa gccgcgatcc gcgcacgaca tttatcgacc gacgtacaaa cggtcgccgc      1740
     tacgctcacg tggcgtggcg tctgggtccc cgaaagcttt cgggaactcg gggagcttgg      1800
     gttaatccgt gggctgctcg agggcttggt cacgcgtgtc ctcaaaggca cccagctcaa      1860
     ctggtctacg ttcaatcaaa gaaatttggc acatcattcg cggacgggag tcgggtaata      1920
     ttctcctgta tagccgcaac aacttcaggc ctcctcgacc tgattttcct tgaactcttt      1980
     ccaattaacg accttcctct ccctctgaaa agtacgtccc atttactccc ggtaggcgag      2040
     taaatgatgt cccaggttac cccgggactg cttctatcca ttctggcttc ggggtaagtt      2100
     ggagctcccc tgtgccgggc ggttgataac cgctcgtcgc gggtgagctg ataactgata      2160
     c                                                                      2161
//
ID   R2-2_DWi    repbase;    DNA;    INV; 3554 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   willistoni.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-3554
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. D. willistoni contains two subfamilies of R2. There may be
CC   only two copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..3319
FT                 /product="R2-2_DWi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FERRSNSWGYQNLEPSNVGQDMNTVPRINNTTTTPAT
FT                 SRPGDQPREAIAVVNLAGEIPCAVCGRLFNTRRGFGVHMSHQHKDELDTQR
FT                 QREDVKLRWSEEEAWMMARKEVELEASGNLRFPNKKLAEVFTHRSSEAIKC
FT                 FRKRGEYKAKLEQIRGQSTPTPEALDSITSQPRPSLLERNHQVSSSEAQPI
FT                 NPSEEQSNWEIMRILQGYRPVECSPRWRAQVLQTIVDRAQAVGKETTLQCL
FT                 SNYLLEVFPLPNEPHTIGRSNLRRPRTRRQLRQQEYAQVQRRWDKNTGRCI
FT                 KSLLDGTDESVMPNQEIMEPYWKQVMTNPSTCSCENTRFRMEHSLETVWSA
FT                 ITPRDLRENKLKLSSAPGPDGITPRTARSVPLGIMLRIMNLILWCGKIPFS
FT                 TRLARTIFIPKTVTANRPQDFRPITVPSVLVRQLNAVLASRLASKVNWDPR
FT                 QRGFLPTDGCADNATLVDLILREHHKRWKSCYLATVDVSKAFDLVSHQAII
FT                 KTLQAYGAPTNFVSFIEEQYKGGGTSLNGAGWSSEVFIPARGVKQGDPLSP
FT                 LLFNLIIDRLLRSYPREIGAKVGNTMTSAAAFADDLVLFAETPMGQTLLDT
FT                 TLGFLASVGLSLNADKCFTVSIKGQAKQKCTVVERRSFCVGERECPSLKRT
FT                 EEWKYLGIRFTADGRAQYSPADDLGPKLLRLTRAPLKPQQKLFAHRTVLIP
FT                 QLYHQLTLGSVMIGVLGKCDRLVRQFVRRWLDLPLDVPVAYFHAPHTCGGL
FT                 GIPSIRWIAPMLRLKRLSNIKWPHLEQSEVASSFIDDELQRARDRLKAENV
FT                 QRCSRPEIDSYFANRLYMSVDGCGLREAGHYGPQHGWVSQPTRLLTGKEYL
FT                 HGVKLRINALPSKSRTTRGRHELERRCRAGCDAPETTNHILQKCYRTHGRR
FT                 VARHNSVVNAVKRGLERKGCVAHVEPSLQCDSGLNKPDLVGIRQNHIYVID
FT                 VQVVTDGHSLDQAHQRKVERYDRADIRSQMRRFFGVTGEIEFHSVTLNWRG
FT                 IWSGQSVKRLIAKDLLIAEDTKLISVRAVNGGVTSFKYFMYCAGYTRS"
XX
SQ   Sequence 3554 BP; 995 A; 795 C; 922 G; 841 T; 1 other;
     gaagctggga agctgggtcg gatgagcgca gaaggggtgt tcttcggagc actgtaattc        60
     ataagtcgta agtctgatca agtcgactcg gaacctcttc gtggtgtttc ctgggtgctg       120
     ttgagttcct agtctctagg ttctctccag tagctaattc gagcggcgaa gcaactcttg       180
     gggttaccag aaccttgagc caagtaacgt tggtcaagat atgaatactg tgcctcggat       240
     aaacaacaca acaacaactc cagcgacttc ccgtcctgga gaccaaccga gagaggctat       300
     agcagtggta aatctcgcgg gagagattcc ctgtgcagta tgtgggcgcc tcttcaatac       360
     tagaaggggg tttggggttc atatgtcaca tcaacacaaa gacgaactag atacgcaacg       420
     tcagcgtgaa gatgtaaaac tccgatggag tgaggaagaa gcgtggatga tggcgagaaa       480
     ggaggtggag ctcgaagcaa gtggtaattt gagatttcct aataagaagc tagcggaagt       540
     atttactcac cgtagctccg aagcaattaa atgttttcgg aagaggggtg aatataaggc       600
     aaaactggag cagatcagag ggcaatctac tcccacccca gaagcgttgg actcaattac       660
     ctcacagcct cgccctagtt tactcgagcg aaaccaccaa gtatcatcgt cggaagcgca       720
     accaatcaat ccatcagaag aacagtcgaa ctgggaaatc atgcggatac tacagggcta       780
     tcgccccgta gaatgtagtc cccggtggag agcccaggtc ttgcaaacta tcgtagatag       840
     ggcgcaggcc gtagggaagg aaaccactct ccaatgctta tccaactatc tcctggaagt       900
     atttccatta ccaaacgaac cacacaccat cggtcggagc aatttgcgaa gacctcgaac       960
     taggagacag ttaagacaac aagagtacgc acaggttcag cgtcgttggg ataagaatac      1020
     tgggagatgc attaaatcct tgcttgatgg aacagatgag tcggttatgc caaaccaaga      1080
     gataatggaa ccctattgga aacaagtaat gacgaatccc agcacatgct cttgcgaaaa      1140
     cacaagattc cgtatggaac attcgcttga gacggtttgg tcagcgataa cgccacgcga      1200
     cctgagggaa aataagttaa agttgtcaag tgctccgggt cctgacggta tcactccaag      1260
     aacagccagg agtgtaccct taggcattat gctacgcata atgaacctga ttctctggtg      1320
     cggcaaaata ccattctcta cccgactggc cagaactatc ttcattccga agactgtgac      1380
     ggcaaatcga ccgcaagact ttcgtccaat aacagtcccc tcggttttgg tcaggcaatt      1440
     aaacgctgtt ctggcttctc gattggcttc taaagtcaac tgggatccaa ggcagcgcgg      1500
     tttcctacct accgatgggt gtgctgataa tgcgacgttg gttgatctca ttttgcggga      1560
     gcaccataaa cggtggaagt catgttacct tgcgacggtg gatgtcagca aggcttttga      1620
     cttagtatca caccaggcca ttatcaagac tttacaggcc tatggtgctc caacaaactt      1680
     tgttagcttt atagaagaac agtataaggg cggcggaacc tccctcaatg gggcaggatg      1740
     gagttcagag gtgtttatac ccgcgcgggg cgttaagcaa ggtgaccctc tgtctccact      1800
     attatttaat cttatcattg atagattact taggtcctac cccagagaga ttggtgccaa      1860
     agtcggaaat accatgacaa gcgcggcagc gttcgcggat gatctggtgc tatttgcgga      1920
     aactccgatg gggcaaacat tgttggatac cacgctaggc ttcctagcct ccgtgggact      1980
     ctcccttaat gctgataagt gtttcactgt cagtataaag gggcaagcca agcagaagtg      2040
     tactgtcgta gaacgacgga gcttttgtgt aggggagcgc gagtgtcctt cattgaagcg      2100
     tactgaagag tggaagtatt taggtatccg gttcactgcg gatgggcggg ctcaatatag      2160
     tccagcagac gacctcggtc cgaagctgtt aagattaaca agagcccctc tgaaaccaca      2220
     acagaagtta tttgcacata ggactgtcct tatcccacaa ctctatcacc aactaacact      2280
     tgggagtgtg atgataggcg tcctaggaaa atgtgacaga ttggtacggc aattcgtaag      2340
     gagatggtta gatctcccac tggatgtacc agttgcgtac tttcacgccc cccacacttg      2400
     tgggggtctc gggattccgt caattagatg gatagcaccg atgcttcgtc tgaagcgatt      2460
     gagcaatatt aaatggcccc acctcgaaca atccgaggta gctagctctt tcattgacga      2520
     cgaattgcaa agggctcgag atagattaaa ggcggaaaat gtgcagcggt gttcgcgtcc      2580
     agagattgac tcgtatttcg caaataggtt gtacatgtct gttgatggtt gcggtctccg      2640
     tgaagcaggt cattatggcc cgcaacatgg atgggtgagt cagcccacgc gcttgctaac      2700
     aggaaaggaa tatttgcacg gtgtcaaatt gcggataaat gccctaccct cgaagtctcg      2760
     tacgacgagg ggaaggcacg aattggagag acggtgtcgt gcaggatgtg atgctcccga      2820
     gacaacaaac cacatcttgc aaaaatgcta tcgtacgcat gggaggcggg tagctagaca      2880
     caacagcgta gtaaatgccg tcaagcgggg acttgaacgg aaaggctgcg ttgcccatgt      2940
     cgaaccaagt ctgcaatgcg actcgggctt aaataaaccg gacctggtgg gaatccgaca      3000
     gaatcacatt tatgtgatag acgttcaggt tgtgacagac ggacattcct tagaccaagc      3060
     gcaccagcgc aaggtcgaaa ggtacgacag agctgacata agatcacaaa tgcggcgatt      3120
     tttcggagtg acaggtgaaa tcgagtttca ttccgttaca ctcaactgga gaggaatctg      3180
     gagtggtcag tcggtaaaac gattgattgc aaaagatctc ctcatcgctg aagataccaa      3240
     actcatcagc gtcagagcag taaacggcgg agtgacgtct tttaaatatt tcatgtattg      3300
     tgctgggtat actcgaagct agatgtacta acctctagtt tctctatact tttgcctgct      3360
     accttggcat tacatctaaa aaggtacaaa catcgcattg gcaaaaagag gtggttttag      3420
     tacataggcg ctgtgggact tcattgtccc gatgatgcag cgaatcgtgc atacgagatt      3480
     gtccagtagt tggttgctcg tatctttaga agatttcctt cctcggcgat caaaanaaaa      3540
     aaaaaaaaaa aaaa                                                        3554
//
ID   R2-2_MR     repbase;    DNA;    INV; 3571 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is uncertain. It is followed by TAGCCAAATGCCTCGTCATC
CC   in a 28S rRNA gene.
CC   AFJA01013616 4044-7614.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..3202
FT                 /product="R2-2_MR_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="PSSPQSERNTYSCSDCDRTFISKRGLSQHQRAAHPET
FT                 RNLLRAEAAMPTVRPPRTGVAFTPDEVERMLELEIQLKNERFIAKAMTAFF
FT                 PGKTCKQLRDKRCEPAYKRRRDEVLARNMADIPGPSSSMPGIRDTPSPPLL
FT                 TLSSSSSSSSSSSSSEEVFVDAASTMEPPFDDSVEWRKFLWNTVSIERPCI
FT                 EDIPERVKSIVERLWNLIDTKINGDPISQEEINTAYDWTMEFFTVDKTSKR
FT                 PKPITSQSHKRKKKLSARAKRKATLYAVTQNLFRNSPASLSKCVRENIPIV
FT                 REDSNGPSIEDFKSLYKNIWGQAGNVKNLDLPTNPQTFEGTTLLRAISMYD
FT                 IKQRIKRTRPKSAAGPDGLMKRDVIKSGHLYILYPMFNLIVAAGRQPDAWR
FT                 KNITKLLNKEGKDPSLPGSYRPITISPLFSRIFWGLIDQQLRLRINITPRQ
FT                 KGFVPEMGCFLNVNLLNEIIRIAKRKQGIVITQVDISRAFDTVPFSAILNA
FT                 LNAKGLPKVVVQLIMDSYSNISTQIQYQSSTFDISIKRGVKQGDPLSPLIF
FT                 NIVMESLILKLESMPGFKINDRTNLSSLAFADDLMFLADNVEDARAQLNLL
FT                 CQFLDSVDMDISIDKCAAFQIITSKDSWYIIDPHLTVAQGSIAFLGPDTPL
FT                 SYLGAKISPWVGVKTDYSIQGLKACVGRVQSLALKPHQKVELMARHIIPHY
FT                 LYGLILSIPSISVIRQLDQCVRVAVKEYLHLPQSTANDLIYCSKKDGGLGF
FT                 PKLEAIVISAALKACLRFLNSSDPVIAEVARESFIEKRAVKLAARANIPWS
FT                 SLNVKTIDDFKLNCKKDEARTWANLPSQGKGVKSFLDDKVGNEWLYRPTLL
FT                 KPSRFITALKMRANVTADKVSLKRAGKSDQILCRHCKVVPETLGHIIGQCI
FT                 YTKGLRIKRHDEICKFILDKILKNSSSSIITREPTLSCPGVGTLKPDLVIH
FT                 NQDKVFIADVTVCHEDGSQLANARTNKVDKYKCLIPKLMFELKVPHAAVLP
FT                 IVVGTRGAMSKSTVEALKLIGVGDRQSLRTISLCALRSSIEAYNIFMDYNS
FT                 TLRPTLHDPG"
XX
SQ   Sequence 3571 BP; 994 A; 793 C; 751 G; 1033 T; 0 other;
     tccctcatcc cctcagagcg agcggaatac atatagctgc tcagattgtg ataggacgtt        60
     catttctaag agagggctct cccaacacca gagggctgcc catccggaaa ctcggaatct       120
     gttaagggct gaagccgcta tgcctactgt tagaccccct aggacagggg tggctttcac       180
     tcctgatgaa gtggagagga tgctcgaact tgagatccaa ttaaaaaatg agcgatttat       240
     agctaaagct atgactgcct tctttccagg taaaacgtgt aagcaattgc gggacaaaag       300
     atgtgagcct gcttataaaa gaagaaggga cgaagtccta gcccgcaata tggcagatat       360
     tccaggaccc tcaagctcga tgccaggtat cagggataca ccatctcccc cattacttac       420
     tctttcttca tcttcttcat cttcttcatc ttcctcctct tcggaggaag tattcgtcga       480
     tgcggcctct accatggaac ctcctttcga tgattccgta gaatggagga aattcctatg       540
     gaatacagtc tcgattgaac gtccctgtat tgaggacatt cctgagcgcg ttaaatctat       600
     tgtcgaacgc ctctggaatc ttattgacac taaaattaac ggtgatccta tctcgcagga       660
     ggaaattaat accgcctatg actggactat ggagttcttt actgttgata agactagtaa       720
     gcgacccaag cctatcacct ctcagagtca caagaggaaa aagaagctct ctgcgagagc       780
     taaaaggaaa gctacccttt acgctgtgac ccagaaccta ttcagaaaca gtcctgcaag       840
     tctctctaaa tgtgtccgag aaaatattcc tatcgtgcgt gaagactcga atgggccgtc       900
     tattgaggat tttaagtccc tgtacaaaaa tatctggggc caggcgggta acgttaaaaa       960
     tttggaccta ccaaccaatc cccaaacatt tgaagggact acccttctcc gggctatttc      1020
     aatgtacgat attaaacagc gtattaagcg cactaggccc aaatcggcag caggtcccga      1080
     tggtttaatg aagcgggatg taataaaatc cggtcatctt tatattcttt accctatgtt      1140
     caacttaatt gttgccgccg gtcgccaacc agatgcgtgg agaaagaata taacgaagct      1200
     gctgaataaa gaaggtaaag atccctcttt acccggtagt tacaggccaa ttacgatctc      1260
     tcccctattt agtaggatat tctggggcct gattgatcag caactgagat tgcgcattaa      1320
     tatcacaccc cgtcagaagg gctttgtccc tgaaatgggc tgtttcctaa atgtcaacct      1380
     gttaaacgaa attattagga tagctaaacg caaacaaggc atagtcatca cccaggttga      1440
     tatttctaga gcgttcgata cggtcccctt tagtgcgata cttaatgccc tcaatgccaa      1500
     aggtctaccc aaggtagtag ttcaattaat tatggattct tactctaata tatccacaca      1560
     aattcaatat cagagctcta cctttgacat tagtattaaa aggggggtca aacaagggga      1620
     tcccctttcc cctttaattt ttaacattgt aatggaatcg cttatactta aattggaatc      1680
     catgccaggt tttaaaatca atgaccgtac gaacctttcg agtctagctt ttgcggacga      1740
     cttgatgttt ttagccgata atgtcgagga tgcgagagcc caattaaacc ttttgtgcca      1800
     gttcctagat agtgtggaca tggatatctc tatcgataaa tgtgctgcgt tccaaattat      1860
     taccagtaag gacagctggt atatcataga cccacacctg acagttgccc aaggtagtat      1920
     cgcgttcctt ggacccgata ctccgctatc ctatcttggc gcgaaaattt ctccttgggt      1980
     aggtgttaag acagattatt ctattcaggg tcttaaggca tgtgtgggta gagtccagtc      2040
     cttggctctt aagcctcatc aaaaagtaga gcttatggct agacacatta tcccacatta      2100
     tttatacggc ttaatcttaa gcatcccttc aatttccgtt attagacagc tagaccaatg      2160
     tgttcgggtt gcagttaagg agtatctgca tctgcctcaa tctacagcca atgacctcat      2220
     ctactgtagc aaaaaagatg gtggcttagg atttcccaaa ctagaggcta ttgttatatc      2280
     cgcggccctt aaagcgtgtc tcagattcct taatagttct gacccagtta ttgctgaagt      2340
     agcgcgggaa tcttttattg agaaaagggc cgttaaatta gctgctagag ctaacatacc      2400
     ctggtcctca ttaaatgtta aaactattga tgattttaag cttaattgta agaaagatga      2460
     agcgaggact tgggctaatt tgccttccca aggaaaaggc gtaaaatcat tccttgatga      2520
     taaagttggt aatgaatggt tatatcggcc aactttactc aaacctagtc ggttcattac      2580
     cgctcttaaa atgcgtgcta atgtaacagc tgataaagtt tctcttaaga gagcgggtaa      2640
     gtccgaccaa attctctgcc gtcattgtaa ggtcgtgccg gagactcttg ggcacattat      2700
     tggccagtgt atatacacca agggcctccg tattaagagg catgatgaaa tttgtaaatt      2760
     tattcttgac aagatcctta aaaattcgtc gtcgagcatc attaccagag agccgacact      2820
     cagttgccct ggcgttggta ccctgaaacc ggacctagtc atacacaacc aggataaggt      2880
     attcattgct gacgtcacgg tgtgtcacga agatggctcg cagctcgcca atgccagaac      2940
     aaataaagtt gacaaatata aatgcctcat tccgaagctt atgtttgaac tcaaagtgcc      3000
     acatgcggcg gttctaccca tcgttgttgg cactagaggt gctatgtcta aatctacagt      3060
     ggaggcgctt aagttaatag gggtcggcga ccggcaatct ttacgaacca tctccctatg      3120
     cgctctccgt agttccatcg aggcgtacaa tatctttatg gattataata gtacgcttag      3180
     gccgacctta catgacccag gctagagtgc acctactctg gtctattctt agtattgttc      3240
     gcgtatttaa tcgtcattag caccatttca ttaaatcatt ttcactcatt cattttctta      3300
     ttttcattca tttttcactc atttgcttat tttgagtaag gtgtgctcta tatataaata      3360
     tatatacatg tatgtatgtt gatgtttgtg ttaattgtat tcgtcctagg ctacgcttta      3420
     agttttcttg ttgttggtat tgaagcctgt agcaaatttg gctgtaattg accaatttct      3480
     acggccccag ccgggcttca ttgttatggg tcaccgcgcc attaaagtcg gaaatacgag      3540
     cctgatgaaa ataaaaggtc tcgcagaaaa c                                     3571
//
ID   R2-2_PBa    repbase;    DNA;    INV; 3544 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from red harvester ant.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [2] (Consensus)
XX
CC   The 3' end is truncated. It follows TAACTATGACTCTCTTAAGG in a
CC   28S rRNA gene.
CC   ADIH01006714 3544-1.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..2022,1859..3289)
FT                 /product="R2-2_PBa_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="ASSVDDVHVPTPPPRGESRATSGQVCPGGQRGSGLVV
FT                 RSRTTQIRGVASPSGLFSAGTSRNSRYNLRRQPRAAGPAASSSPLPQPSPG
FT                 PSRRAPAVSRRHPLSAAPASPAIPHRPGFPCPDCGRAFSTKSGLGLHRRRA
FT                 HEAVVNEEINVERVKRQWSAEEQRMMAREEALAVHRGVRFINQHLLAIVPN
FT                 RTLDAIKGMRKNGEYRRLVAAALEDLSATSGESSFLSGGGSSPSTSPQATA
FT                 IASHGAASPPSTPASPGWGEMYGSFAGAIRALIPVVEAIQGWNSRALVQIG
FT                 TGVLDGGRCAEAIGPWLAGVFPPTAPRQPRRHRVANPNRKARRRAEYARIQ
FT                 RLFRSQMSRVAREILDGAPVSDVVPDVQQMAAHWGPFVAQASVPIALAPRL
FT                 PPKRELLGAWSPISCEEVAAVNLPLNSAPGLDGIGVRLWRAMPSSIKALLF
FT                 NIVLHCGGFAASMLVSRTVFIPKKGECSLPGDFRPISITSVVVRHLHKILA
FT                 QRLRGYRIVDLRQRCFDDGCGENVAVLASLLMDARSRRREMHVASLDFAKA
FT                 FDSVSHGAIINALTGVGLPHGLVDYIQRTYARSSTMFEVRGVRSELSGIGR
FT                 GVRQGDPLSPVLFCLVVDEIIRSIPADVGYQLGEHRINSIAYADDVLLFAA
FT                 TKWGPPDQYPSGGGEGESDGASLSRDLYLPTSVTNWESIVSTALHMLTMFS
FT                 SLLPPSGGLQTSIQVVEERARAMGLLFHAKKCSVLSLVPSGREKKIKIITT
FT                 PQVRLRDGTWLPQLDTAAEWRYLGVDFRPAGPRKVGSDISIYLSRLSRAPL
FT                 KPQQRLKIVRCFLLPRLYHALVLGRATLGKLRALDVQTRAAVRRWLRLPND
FT                 VPTAFFHSPVSSGGLGIPAMATTVPGLLFERLGSLESSTAPQVQAIAQYTW
FT                 AMRRREWARRALTRDGVCLATKHRRDGWWCHRLYQSVDGFELRECRDSNLS
FT                 SWWVDLGSHAIPGRDFVQYVHVRANTLPTRIRTSRGVRRELYATRCRAGCN
FT                 STETAAHVIQGCFRTHGGRVLRHNAVCRVLASGLRNVGWTVHEEPVYVTAE
FT                 GKRKPDLLCLRDSRVVVLDAQVVSGATPLGDAHERKVRYYKDNVSLCGAIS
FT                 RETGVQQPDIGFSSCTISWRGIWCLASADWLLGMGLTKGLCGE"
XX
SQ   Sequence 3544 BP; 586 A; 1042 C; 1107 G; 809 T; 0 other;
     gcgtcatcgg tcgatgacgt ccatgtgcca accccacctc ctcgtggtga gagtcgggca        60
     acgtcgggac aagtctgtcc cggcggccaa cggggctctg gcttggtggt acgctcgcgt       120
     accacccaga tccgtggggt tgccagcccc tcgggtctgt tttcggcagg cacttccaga       180
     aatagtagat acaatctccg gcggcagcct cgggccgccg gtcctgccgc gtcttcgtcc       240
     ccccttcccc aaccctctcc gggcccgtcc cgacgggctc cggctgtctc gcgtcgtcat       300
     ccgctctctg ctgcccctgc ttcccctgcc atcccgcatc gccctggttt cccgtgccct       360
     gactgtggcc gtgcgtttag cacaaaatcc ggactcggcc tccaccgccg tcgggcgcac       420
     gaggccgtcg ttaacgagga gatcaatgtc gagagggtta agcgccagtg gagcgccgaa       480
     gagcagcgca tgatggcgag ggaagaggcc ttagccgtgc atcggggtgt ccggtttatt       540
     aaccagcatc tactcgctat tgttcccaac cgcacacttg atgctatcaa ggggatgcgg       600
     aagaacggcg agtaccggcg cctcgttgct gcggccttgg aggatctgtc cgctacatcc       660
     ggggagagct cgtttctttc cggtggcggc tccagtcctt cgacctcccc tcaagctact       720
     gccatcgctt cccatggggc tgcctcgcct ccgtctactc cagcttctcc cggctggggt       780
     gaaatgtacg gcagttttgc cggcgccatt cgcgctctca tcccagtcgt ggaggccatc       840
     cagggatgga attcccgcgc cctggtccag atcggaactg gcgtgctgga tggcggacgg       900
     tgtgcggagg ctattggccc gtggcttgct ggtgtgttcc ctccgacggc tcctcgacag       960
     cccaggcgtc accgtgtcgc caacccgaat aggaaagcgc gacggcgggc ggagtatgca      1020
     cgtatccagc gtctgttccg ctcgcagatg tcgcgcgtgg ccagggagat cctggatggt      1080
     gccccggtgt cggacgtggt ccccgatgta cagcaaatgg ccgcgcattg gggtccgttc      1140
     gtcgcgcagg cctctgtgcc aattgcgcta gctccgcgac ttccgcctaa gcgggagctc      1200
     ttgggcgcct ggtccccgat ctcctgcgag gaggtggcag ccgtcaactt gcccctcaac      1260
     tcggcccccg ggttggacgg tattggtgtt cgcctgtgga gagccatgcc atcatccatc      1320
     aaggctctcc tcttcaacat tgtgctgcat tgcgggggtt tcgcagcgtc gatgcttgtg      1380
     agtcggacgg ttttcatccc gaagaagggt gaatgctctc ttccgggtga tttccgtccg      1440
     atctccatta cctccgtggt cgtgaggcat ttacataaga tcctggccca gaggcttcgc      1500
     gggtacagga ttgtcgatct gcggcagcgt tgcttcgacg acgggtgcgg cgagaatgtc      1560
     gccgttctgg catcattatt aatggatgcc agatcccgtc gtcgagaaat gcacgttgcc      1620
     tccctggact tcgcgaaggc ctttgatagc gtcagtcacg gagccatcat caatgctctg      1680
     actggcgtgg gcttgcctca cggcctcgtt gactacatcc agcgcactta tgcgcgtagc      1740
     agcacaatgt tcgaggtgcg cggtgtcaga tccgagctct ctggtatcgg cagaggcgtc      1800
     aggcaggggg atcccctatc gccagtgctg ttttgcctgg tggtggatga gatcataaga      1860
     tctatacctg ccgacgtcgg ttaccaactg ggagagcatc gtatcaacag cattgcatat      1920
     gctgacgatg ttctcctctt tgctgccacc aagtgggggc ctccagacca gtatccaagt      1980
     ggtggaggag agggcgagag cgatggggct tctctttcac gctaagaagt gctctgttct      2040
     ctctctcgtt ccttccggcc gggagaaaaa gatcaaaatt attacgaccc cccaggtccg      2100
     gctacgtgac ggcacgtggc tgccacagct ggacaccgcc gccgaatggc gctacttggg      2160
     ggtcgacttc cggccggcgg gaccgaggaa agtcgggtcg gatatttcta tttatctgag      2220
     ccggctgagc agagcaccac tgaagcccca gcagcggctg aagatcgtcc gctgcttcct      2280
     tctcccacgc ctctaccacg cgctggtttt gggtagggcc acgcttggca aattgagagc      2340
     tctggatgtt cagacccgcg cggctgtccg tagatggctt cgtctcccaa atgatgtccc      2400
     aacggccttt ttccactcac cggtttcgag tggggggctc ggcattcccg cgatggccac      2460
     cacggttcca ggcttgctat tcgaacgtct tggcagtctg gaatcttcta ccgccccgca      2520
     ggtgcaggcg atagcccaat acacctgggc gatgcgtcgg cgggagtggg cgcgtcgcgc      2580
     gcttacccgc gacggggtgt gcctcgccac caagcaccgg cgggacgggt ggtggtgcca      2640
     tcgactttat cagtcggtgg atggctttga actgcgggag tgccgggatt ccaacctctc      2700
     ctcgtggtgg gtggacctgg ggagtcacgc tattcccggc cgtgattttg tccagtatgt      2760
     gcatgtgcga gccaataccc tcccgactcg tattcgtacg tcgagggggg tgaggcgtga      2820
     gctgtacgcc accagatgtc gtgccggttg caattccacc gagacggccg cgcacgtcat      2880
     ccagggatgc ttccgaaccc atggtggccg cgttcttcgg cacaatgctg tgtgccgagt      2940
     tcttgcgtca ggactgagga acgtgggctg gacggtgcac gaggagcctg tgtacgtcac      3000
     ggccgagggc aaacgcaagc cggacttgct ttgcctgcgt gactctaggg tcgttgtgct      3060
     ggacgcacag gtggtcagcg gcgcaactcc tttgggggac gctcacgaac gtaaagttcg      3120
     ttactacaag gacaacgtgt ccttgtgtgg agcgatttcc cgggagactg gcgtacaaca      3180
     gccggacatt ggattttcct cctgtaccat ctcttggagg ggaatttggt gtctcgcgtc      3240
     cgctgactgg ctactgggca tgggattgac gaaggggctt tgcggggaat aacaacgcgg      3300
     gttttacagg gcagccacac taactggact cgatggaacc aaatgacatc cgtggttccc      3360
     atcgggccag tacagcggga cagggagggg attggggtga ggggacgacg atgtgtgtgt      3420
     atatgtgggg aacccgtccc ctttcctgtc tgcgtgttgt gttggtccag tagtgttggg      3480
     tgcgtctctt cgatttttgg tgtcgtggac cccctaattg tatgtgtttt tgtgtcttcc      3540
     ttcg                                                                   3544
//
ID   R2-2_RPr    repbase;    DNA;    INV; 2346 BP.
XX
AC   .
XX
DT   04-JAN-2013 (Rel. 20.10, Created)
DT   04-JAN-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   R2 non-LTR retrotransposon sequence.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2346
RA   Kojima K.K. and Jurka J.;
RT   "R2 non-LTR retrotransposons from Arthropoda, Chordata,
RT   Hemichordata, Platyhelminthes and Ctenophora.";
RL   Repbase Reports 15(10), 3503-3503 (2015).
XX
DR   [1] (Consensus)
XX
CC   It is between AGTAAGCGCGGGTCAAGGCG and TAGCCAAATGCCTCGTCATC in a
CC   28S rRNA gene.
CC   ACPB02021849 3711-1366.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1233,1140..2003)
FT                 /product="R2-2_RPr_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="RLLFNCLMLWGAIPGEMLEAQTTMIPKVSGPLAPGDY
FT                 RPITVASVIVRHYHKLLARRLGDAYDFLPAQKGFVPGLDGVGDSVIRLNAI
FT                 LRKARRSRRALVVVSLDVAKAFDSVSHEAILAVLRGKGSPPALTDYVARCL
FT                 SRSTLRLKWRGDRSRAIRMARGVRQGDPLSPFLFNIVMDHVLTGLPERVGF
FT                 PLGSPGARIGALAYADDLLLFASSEIGARAQIAAAESGLAECGLRVNPRKS
FT                 WSLCLNPSGRQKLVKVDSDVGFRAAGERVFSVGIADTFDYLGTRFGPFGAS
FT                 EVVLGLDEKLHKVHRAPLKPQQKLEVVRDFLLPGTYHELVLGQVRKPELSR
FT                 WDVKVRSFIRGWLRLPHDIANAYLHAPIKCGGLALPELARLVPAWRRLRRE
FT                 RIISGWGDAEAEELGGYAGQVGAGMAAAPTGENYFGLGGRGGRGIGGVLEE
FT                 VGGGITPSEVRVAQMEDLHRRVDGRDLEESARVAASYSWKRAGANALSGRE
FT                 FVQFVRLHAGCLPSRMRRARGRREESGPLWCRAGCPRAETVAHIVQACHVS
FT                 KGGRILRHHAVVRVLAAAFEIRRYGVYQEVSMALAGVRVRPDLVVTKRECA
FT                 WVLDVQVVSPQGALAVIDSRKRAKYDTAEVRGAVQELTGKREVGVVAVTIS
FT                 WRGIWCVRSARDLRAMGISARVLEWITERVLRGSHTNWTRWNALRGDRAG"
XX
SQ   Sequence 2346 BP; 464 A; 472 C; 837 G; 573 T; 0 other;
     cggttattgt tcaattgtct tatgttatgg ggagccatac caggtgaaat gttagaggcg        60
     cagaccacaa tgattccgaa ggtatcaggg ccgctcgctc cgggggatta taggcccata       120
     actgtggcct cggttattgt gcgtcactac cacaagctat tggcacgccg gctgggcgac       180
     gcgtatgatt ttttgcctgc gcagaaaggt tttgtaccgg gcttagacgg cgtaggggat       240
     agtgtgattc gcttgaatgc gatactgcgt aaagccagga ggtcacggcg ggcgttggtg       300
     gttgtcagtc tggacgtggc taaggctttc gatagcgtca gtcacgaggc tatcttggcc       360
     gtactccggg gcaagggttc gccgccagca ctcacggatt atgtggcgag atgtttgtcg       420
     agatcgacac taaggttgaa atggcggggg gacaggtcca gggccatccg tatggcaagg       480
     ggggttaggc agggagaccc gttgtccccc ttccttttca atattgtaat ggatcacgta       540
     ttgactgggc tcccggagag agtgggcttc ccgttggggt cgccgggtgc tcggatcggg       600
     gctttggcgt acgcggacga tttgctgctg tttgcttctt cggagattgg tgcgagggca       660
     cagatcgcgg cggccgagtc gggcctagcg gagtgcggtt tgagggttaa cccgaggaag       720
     tcttggtccc tttgtctcaa tccgtccggg aggcaaaagc ttgttaaggt ggactctgat       780
     gtcggatttc gggctgcggg cgagagagtg ttctcggtag gaattgcgga cactttcgac       840
     tatcttggaa cgcggtttgg gccattcggg gcgagcgagg tggtactggg ccttgatgag       900
     aagctgcata aggtgcatcg tgccccgttg aaaccgcaac aaaagttgga ggtggtgagg       960
     gatttcttac tgccggggac atatcacgag ttggtattgg ggcaggtgcg gaaaccggaa      1020
     ctctctagat gggacgtgaa ggtgaggtct tttatcaggg gatggctgcg gctgccgcac      1080
     gatatcgcga atgcttattt gcatgctccg ataaagtgcg ggggcttggc cctccctgag      1140
     ctggccaggt tggtgccggc atggcggcgg ctccgacggg agagaattat ttcgggttgg      1200
     ggggacgcgg aggccgagga attggggggg tattagagga ggtggggggt ggaatcaccc      1260
     ccagtgaagt gcgggtggct cagatggagg acctccacag acgagtggac ggccgggatc      1320
     tcgaggagtc cgcgagggta gcggcctcat atagctggaa gcgggcgggc gctaacgcat      1380
     tatcggggcg cgagtttgta cagtttgtcc ggctgcacgc gggttgtctc ccgagtagga      1440
     tgaggagggc cagaggcaga agagaggaat cggggccatt gtggtgcaga gcggggtgcc      1500
     ctagggcgga gaccgttgca catattgtgc aggcctgcca tgtgtcaaag gggggcagga      1560
     tactcaggca tcatgctgtg gtcagggtgc ttgctgcggc ctttgaaata cggcgatacg      1620
     gggtgtatca agaggtttct atggcgctgg cgggggttcg ggtaaggcct gatttggtgg      1680
     tgaccaagag ggaatgcgcg tgggtcttgg atgtgcaggt ggtctcaccg cagggtgcgc      1740
     tggctgtaat tgatagtcgg aaaagggcca aatatgacac ggcagaggtg cgcggggcgg      1800
     tacaagaact gacaggcaag cgtgaggtcg gtgtggtggc ggtcaccatt tcatggaggg      1860
     ggatctggtg cgtccgctcg gcgcgggacc tgcgggccat gggaataagc gcgagggtgc      1920
     tggagtggat cacggaaagg gtcttacggg gatcacacac gaattggaca cgctggaatg      1980
     ctttgagggg tgatcgcgcg ggttaaaata cttaggcctg gttgagaatc atggttatgc      2040
     tatgggagaa gggctgtatc ggtgaacact ccaattgctc ccctctgggg ggcagttttg      2100
     acccgaatgg gtccattttc ggccgtctgg ccagattggg cgtagagccg ccctttaggt      2160
     ttaggccttg gtaaagcgag ttgtgtcagt gaagtattgt ctgcattatt tatgtacagg      2220
     ttttgtattg gggttattta gtatctatta tttagtgttt agtatttaac attgatatat      2280
     ttttgtatta tattggtatt tgcattattg taagaaatgt acatatgctc aaatataaat      2340
     tgtcaa                                                                 2346
//
ID   R2-2_TCas   repbase;    DNA;    INV; 4161 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from red flour beetle.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-2_TCas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-4161
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   This retrotransposon is inserted into the same sites as other
CC   R2. This is 64% identical in protein sequence to R2Hc from the
CC   lady beetle Hippodamia convergens.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine:
CC   Tribolium castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           662..3928
FT                 /product="R2-2_TCas_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="MKSRSFRRIGDCAAGSSRRGVRLTGKAGREGRFAASP
FT                 HLSPRYLAGSVSGNVPSVPPGPGLGAGAPAFAAGRNADGGPAQNPCPYCAR
FT                 SFTTANGRGLHIRRAHPDEANNAIDIERIHARWSHEETAMMARLEAGAIQR
FT                 GGVRFMNQFLVPRMPGRTLEAVKSKRRDATYKALVQRFLQAPQINLPELRD
FT                 GDAPRQPDPQQENPPEPPSFDGAIRGAVADLVGGVDWQRLGFQGDRLCNIA
FT                 RRACDGGDVSGQLLGWLRDVFPVKRVSTRGDQSDLDVDGALVSRRTARTRE
FT                 YARVQELYRKEPKACLARILGDRREGANRAPNRDPAFIDFWRGVFSEASAE
FT                 VEGWAEEVSDHGELARRVWDPISVEEVGRSRVRNGAAPGPDGIAVSVWNKL
FT                 PPEAAALLFNVLLLGRCLPAELTRTRTVFIPKTDAPRTPADYRPISIASVV
FT                 ARHFHRVLSARVQRIPDLFTKYQRGFLSGVDGIADNLSVLDTMLTMSRRCC
FT                 KHLHLAALDVSKAFDTVSHFAIVRACRSIFGSAETVLEEGGRRHFVQVRXG
FT                 VRQXDPLSPLLFNLVLDRALKRLSTDVGFRLTDATKVTALAFADDVVLCAT
FT                 TARGLQTNLDVLEAELRLAGLLLNPNKCQALSLVASGRDHKVKLVTKPTFK
FT                 VGQNTIHQVDASSIWKYLGIQFRGSGMCGCGSEGVAAGLKRITCAPLKPQQ
FT                 RMHLLRVFFLPKFYHAWTFGRLNAGVLRRLDVVVRTSVRTWLRLPHDIPVG
FT                 YFHAPTKSGGLGIPQLSRFIPFLRLKRFDRLGRSAVDYVRECAFTDIADRK
FT                 IRWCRERLSGIVDQVAGGRDALDAYWTAQLHQSVDGRALRESASVASSTQW
FT                 LRCSTRAIPASDWLHYTAVHIGALPSRVRTSRGRRGGQDVSCRGGCLLDET
FT                 PAHCIQVCHRTHGGRVLRHDAIAKRISADLMELGWIVTREVSFRTTAGVFR
FT                 PDMVAVKEGVTVILDVQIVSPAPTLDEAHRRKVAKYRDRADLARYLAEAAV
FT                 ARGRAPPANIRFASATISWRGVWSAESVGSLRELGLSARHFDRYTTMALCG
FT                 SWRNWVRFNASTASRMGRGRGDASPRRHENQQ"
XX
SQ   Sequence 4161 BP; 794 A; 1113 C; 1317 G; 932 T; 5 other;
     tggaagaccc cgcccatgag gcttggagag tgtgatcctg atcacacttg aaaagttatg        60
     ctgagtacgt cgtgagagtc ggtaactgtc ccaggatggt ctgggatagg ctaaacctca       120
     gcaggggaaa gttgtagggg cctgccaccc ctacactttt atagatatgg cattcgatac       180
     ctcaaataga gcctcggact tggaggagca tggttcccct cctcctcgta ctagacctgg       240
     aaccaacggt cttgacaacc ccattggacc tacgggagcg gaccatgctc atggacatgg       300
     attccgaaga cgaagcgggg gaacacggac cccccgccga taatgctcac ttaacgtcag       360
     gcgaacccat cgaaatcatc ttgatgttac cctttcaaag caggtcatgc ggcatatgtc       420
     tcaatgccgg aaagggtggc tcccgggcgt aacggacatc tatcgctgat ggaasctagc       480
     tcgctcttga agaacggcgg acggggactt ggaatcgtgg tgtggttctg atgtaagtcc       540
     tgaaattatg gcgtgatggc ccgcccgccc gaccggaggg acttagaacc cccttccgcg       600
     agggtcctgt ctgtaggtcc wccatctccg taaaacgagt tggaggaaac cgcagacggg       660
     gatgaagagt cgttcgttcc gtcgcatcgg ggattgcgca gctgggtcaa gtcggcgggg       720
     tgttcggcta acgggcaagg ctgggcgtga ggggaggttt gcagcttccc ctcacttaag       780
     cccacgttat cttgcaggct cggtttcagg taatgttcct tcagttcccc ccggccccgg       840
     cctgggggcc ggggctcctg catttgctgc tggtcggaat gccgatgggg ggcccgccca       900
     aaatccgtgc ccgtattgtg cacggtcgtt tactaccgcc aatggccgcg ggttgcacat       960
     acggagggcg catccagacg aggctaataa cgccatagac atcgaacgca ttcatgcccg      1020
     ctggtcacac gaggagacag ccatgatggc caggcttgag gccggtgcca tccagcgagg      1080
     gggtgtaagg tttatgaacc agtttctggt tccgcgcatg ccgggcagga ctctggaagc      1140
     ggtgaaaagt aagcgcagag atgcgactta caaagcactg gtccagaggt ttctgcaggc      1200
     gccgcaaata aacctccccg aactgcgtga tggtgatgcg cctcgtcagc ctgatcctca      1260
     acaggaaaac cctcccgagc ccccttcttt cgatggggcg atcaggggcg ctgtcgccga      1320
     ccttgtcgga ggggtcgact ggcagcgcct cgggtttcag ggagaccgtc tctgtaacat      1380
     cgcgagacgg gcttgcgatg ggggggatgt ttcgggccag ttgctgggct ggctgcggga      1440
     tgtcttcccc gtcaagaggg ttagtactag aggggatcag agcgacctag atgtcgacgg      1500
     cgcattggtg agcaggcgca cggcgaggac aagggagtac gctcgggtgc aggagctgta      1560
     ccggaaggaa cctaaggcgt gtttggctcg aatccttggt gatcgtcgag agggggccaa      1620
     tcgggctcct aatcgcgatc ccgcattcat cgatttttgg cgaggcgtct tttcggaggc      1680
     gtccgctgag gtcgagggat gggcggagga ggtctccgac catggtgagc tggcacgccg      1740
     ggtttgggac cccatctctg tcgaggaggt gggaaggtct cgggtccgga atggtgcagc      1800
     gccggggccc gacggaatag cggtttccgt gtggaacaag cttccgccgg aggccgctgc      1860
     ccttcttttc aatgtgctgc tgttggggag atgtctgcct gcagaactca cccgcacgcg      1920
     aacggtcttt attccaaaga ccgacgcacc gcgaacacct gcagactatc ggccgatttc      1980
     gatcgcgtcg gtagtcgcac ggcacttcca ccgtgtctta tccgcacgtg ttcaacgcat      2040
     tcccgacttg ttcacaaagt atcaaagggg cttcttaagc ggcgtggacg ggatcgcaga      2100
     taatctctcg gtccttgaca caatgctgac gatgtcccgg agatgctgca agcatttgca      2160
     cttggccgcg ttagacgtgt caaaagcatt tgacactgtc tctcactttg ccatagtgcg      2220
     tgcttgccgg tccatatttg ggagtgcgga gaccgtgttg gaggagggcg ggaggaggca      2280
     cttcgtgcaa gtgcggygtg gggtgaggca gkgagaccca ctctctcctc tcctctttaa      2340
     cctggtcttg gaccgggctc tgaagaggct gtccaccgat gtgggctttc gtctaacgga      2400
     tgcgaccaaa gttacggcac tcgcttttgc ggacgacgtc gttctgtgcg cgaccaccgc      2460
     tagaggactc cagaccaatc tggatgttct cgaagcggag cttcgcctag ccggtctctt      2520
     gttgaacccc aacaagtgtc aggccttatc cttggtggct tccggacggg accacaaagt      2580
     gaagctcgtg acaaaaccca cctttaaggt gggacaaaac acgattcacc aagtggatgc      2640
     gtccagtatt tggaagtacc tgggaatcca gtttaggggt agtgggatgt gcggatgcgg      2700
     ttcggagggt gtggctgctg ggttgaagcg gatcacttgt gctccgctga agcctcagca      2760
     gaggatgcac ctgctgcgag tctttttctt gcccaagttt tatcatgctt ggacatttgg      2820
     gagactcaat gcgggtgtac tgcgccgtct ggacgttgtg gtccgaactt cggttcggac      2880
     ctggctacgc ctcccccacg atataccggt gggatacttt cacgctccta cgaagtccgg      2940
     ggggctgggg atcccgcagt tgtcacgatt catcccgttc ttgcgattaa agcggttcga      3000
     ccggttgggg cgttccgcgg ttgactatgt ccgagagtgt gcatttacgg acattgcgga      3060
     tcgaaagatc cgatggtgcc gtgagcgcct ctcgggcata gtggaccaag tcgcgggtgg      3120
     gcgggacgcg cttgatgcat attggacagc gcagcttcat cagtcggtgg acggaagagc      3180
     actaagggag tccgcttcgg tggcttccag cacgcagtgg ctccgctgta gcacacgtgc      3240
     aattccggcc tctgactggc tgcattacac ggctgtccat attggcgccc taccatcgcg      3300
     tgttcgcaca tcgcgtggga ggcggggcgg ccaggatgtc tcttgtcggg gtggatgtct      3360
     tctggacgaa actccggcac actgcatcca ggtttgccac cgcacccacg gggggcgggt      3420
     gttgcgacac gacgccatcg ccaagcgcat ttctgccgac ctgatggaac ttggatggat      3480
     cgtaacgagg gaggtttcct tccggacgac tgcgggtgtt ttccggccgg acatggtcgc      3540
     ggtaaaggag ggtgttaccg tgatcttgga cgtgcagatt gtttcaccgg ccccgacact      3600
     ggatgaggcc catcggcgaa aggttgccaa gtatcgggac agggctgacc tggccaggta      3660
     cttggctgag gctgcggttg ctcgtgggcg tgcgccgcct gcgaatatac gatttgccag      3720
     cgcgaccatc tcttggcgag gcgtttggag tgctgagtcg gtggggtccc tgcgcgagct      3780
     ggggctctcc gctcggcact tcgatcgcta tacaacgatg gcactctgcg gttcatggag      3840
     aaattgggtg cggttcaatg cgtccacggc ctctcggatg ggtcgtggac gcggcgacgc      3900
     gagtcctcgg aggcacgaaa atcagcagtg atgctccttt ggttttacca tctgtggggg      3960
     catcggtcct cacggtttcc tcgggtttcc tattgttttt cctaaacccg acaaggagcc      4020
     ctttggccct cctccttaaa cacctctcct tcatcctstt agtccattcc ggctaaaatg      4080
     atgaagaccg aggagtgtca ctctcttggc ggggttaacc cgtccaagtg taaatgtgac      4140
     ctcgccattc gggctctgat a                                                4161
//
ID   R2-3_MR     repbase;    DNA;    INV; 2436 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-3_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-2436
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is truncated. It is followed by TAGCCAAATGCCTCGT in a
CC   28S rRNA gene. A shorter copy with 100% identity is present
CC   downstream (AFJA01012624 3095-3362) of this longer copy.
CC   AFJA01012624 1-2436.
XX
FH   Key           Location/Qualifiers
FT   CDS           275..2230
FT                 /product="R2-3_MR_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="HRLGCCTPVVVVRQLHKILAKRMMAAGLIDERQRCLD
FT                 DGCAENVTVLAAAIGHARRHRRELHVVSLDVAKAFDSVSHEAITSALTEVG
FT                 VPATLVDYVKTTYQRSTTVLEVRGKRSGNIVVRRGVRQGDPMSTVIFSLVA
FT                 DRVLRAIPRTVGYAMDQDHLINGVAFADDMCLVASSVTGMSAALAAVEQAA
FT                 GLQGLAFNISKCVAVSIVPSGRDKKVKVITEPQFALLSGAPIRQLGPVDEW
FT                 RYLGVNLSPVGLKKASPTLEAELDRITRAPLKPQQRLKILRCFLITRFYHR
FT                 LVLSGCTMKVLRHLDLQVRAAVRRWLRLPKDVPVAYIHAACRHGGLGIPSF
FT                 VTTIPGLIRERLARMKDSSFSSARTVYNSLWVQNKICWTDRALNMNGERLY
FT                 SSDHRAKYWAGRLYESVDGRELRDCEQSTASTKWIDAGSLGVPGRDYIQYH
FT                 HIRINSLPTRVRTSRGQRLVQNNIKCRAGCNCTETSAHIIQACFRTHGGRI
FT                 KRHDAVCKTLADHLRSREMRVIVEPHLRTSEGVRKPDILVVHRGKGYIVDA
FT                 QIVSGAASLDDSHGRKVEKYNTVSIKEAVAEKLDVPPSAVTVLSCTISWRG
FT                 VWSGASARALGASLGVPVGLLAGITTRVIQGSHTNWTRWNQMTSVVPFARE
FT                 GVG"
XX
SQ   Sequence 2436 BP; 534 A; 630 C; 701 G; 571 T; 0 other;
     accccacctt gccagaagac cggcaacgac gtgagctggc ggagcctgtc cacgggtggg        60
     aggtcaactc cataaatgtt cccttgggct cggcagcggg tgtcgacggc ataacacctg       120
     ccgaatgaag gaagtgtcct gtcactgtta gaaccctcct ttataatatg atcctttata       180
     tgggatcttt tccgagcacc gtcctcactg gtaggactgt ctttgttcct aagacgtcaa       240
     acgccaccct gctgtctgac tttagaccga ttagcatcgc ctcggttgct gtacgccagt       300
     tgttgttgta cgccagttgc acaagatcct ggcgaagcgt atgatggctg ctgggttgat       360
     tgacgagagg cagagatgtc tcgacgatgg ctgcgcagaa aatgtcaccg tactcgcagc       420
     cgccattggt catgctcggc gtcaccgtcg tgaactccac gtggtgtcgc tcgacgtggc       480
     taaggccttc gactcggtta gccacgaggc cataacatcg gccctgaccg aggttggtgt       540
     acccgcaacc ctggtggatt acgtgaaaac cacctaccaa aggtctacca ccgtcttgga       600
     ggttcggggt aagcggtcgg ggaacatagt cgttaggaga ggggttaggc agggcgaccc       660
     aatgagcact gtcatcttct ctttggtcgc cgacagggtg ctccgcgcta tcccgaggac       720
     agtgggatac gcgatggacc aggaccacct cattaatggt gttgctttcg cggacgatat       780
     gtgcctggtt gcatcgtccg tgaccggtat gagcgcagca ttggccgcgg tcgagcaggc       840
     agcggggttg caggggctcg cgttcaatat atctaagtgc gtcgctgtct ctatcgtacc       900
     atctgggcgt gataagaagg tgaaggttat caccgagcct cagtttgcct tactgagtgg       960
     cgccccaatt cgtcagcttg gtcccgtcga tgagtggcgg tacctcggcg tcaacttgag      1020
     tccggtgggc ttaaagaagg ctagcccgac gttagaggct gagcttgacc gcattacgcg      1080
     agcacccctg aaacctcagc agcgtcttaa gatcttgcgc tgctttttaa taactagatt      1140
     ctaccatcgt ctagtgctgt ctggctgtac catgaaggtt cttcgacatc tcgaccttca      1200
     ggttagagcg gctgtacgga ggtggctccg gctgccaaaa gatgttccgg tcgcctatat      1260
     ccacgcggcc tgcaggcatg gcgggcttgg aatcccctct ttcgttacca ccattcctgg      1320
     cctgatacgg gagcgacttg cacggatgaa ggactcatcc ttctcctctg cgaggaccgt      1380
     gtataattcg ctttgggtcc agaacaaaat ctgctggacc gatagagctc tcaacatgaa      1440
     cggcgagaga ctctacagct cagaccatcg agccaaatat tgggctggac ggctctatga      1500
     gtcggtggat gggagggagc ttcgggactg tgagcagtcc actgcgtcta ccaagtggat      1560
     cgatgcgggt agcctgggtg ttcccggtag ggattacatc cagtaccatc atatccgtat      1620
     taacagcctc ccgactcgtg tgcgcacgtc tagaggtcaa aggcttgtgc aaaataacat      1680
     caagtgccga gcaggttgca attgcacgga gacctcagcg cacattatcc aggcctgctt      1740
     ccgcacacat ggcggccgta ttaagcggca tgacgccgtg tgtaaaacgc ttgctgacca      1800
     ccttaggtcg cgtgagatgc gagtaattgt tgaaccgcac cttcgaacat cggagggtgt      1860
     gaggaaaccc gacatcttgg tggttcatag aggtaagggt tatatagttg atgcccagat      1920
     cgtcagtggt gcggcgtccc tcgacgacag tcacggaaga aaggtggaga aatataacac      1980
     ggtctccatc aaggaggcag ttgccgagaa gctagacgtt ccgccgtctg ccgtgacagt      2040
     attgtcctgc accatttctt ggcgtggtgt atggagtggc gcgtctgccc gggcgctagg      2100
     ggcgagtctc ggtgtccctg ttggtttgtt ggctgggatt acaacgaggg tcatacaagg      2160
     gtcccatact aactggaccc gatggaacca aatgacttcg gtggttccat ttgcgcgcga      2220
     gggagtgggg tgatgtgttc ccgtctcccc cattactcag gataacctgc gtccttccat      2280
     cataaatcgg cagcaggaaa tagagccgtc ctctaccata acatctcggt tagaggagag      2340
     aggtttttag tgggtatatg gagtcccaca ctaccacggc gcgccgtggt gtctataaaa      2400
     gattttcctc tccaaaaaaa aaaaaaaaaa aaaaaa                                2436
//
ID   R2-4_MR     repbase;    DNA;    INV; 3726 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-4_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is truncated. It is followed by TAGCCAAATGCCTCGTCATC
CC   in a 28S rRNA gene.
CC   AFJA01012496 1-3726.
XX
FH   Key           Location/Qualifiers
FT   CDS           40..3369
FT                 /product="R2-4_MR_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="LQISTAPRNTRNKTRIPGLDSVDDSATSHGYPVDTRS
FT                 DDDCSTCPSCLTDLSSRILAQRKQHIRRCNQPPPNEDGTYTCETCSSKFQK
FT                 YAGLRQHIKRAHPTDYNDQDLVLAVKRATTSRPKWTPSEEKQLALLESQLP
FT                 AGLSQAEINTRLAALHTGRSSEAIKKQRQKLSYKDALSGISSASTSAAGSV
FT                 PLSPPSTDSRCPAESVAARADLPSDIPDVGYERPPSDAGGNSNSCPPLLQH
FT                 SDICRFLRELSPSCSLEVQQLIATLFDCAEFEEFDPHICHAISELGNHKDS
FT                 LRTAGGRRGGHKRGKVKRPGTKRKSNRAAKRSANFSTYQRLFAENPTQVAH
FT                 AILDDKDINVTTCPKMAEIEAYFRPIFEECPDYSGPDPQPPSEVRHMDYPI
FT                 TTAETELALRRLKQSASGPDKITRDDLRKANLADVVGLLNIVFGLCRTPTL
FT                 LRHNRTVLIPKKGDLSLTSNWRPITVSSIFSRLLHKILASRLSNNIKLHHA
FT                 QRGFTPCDGIMSSSTILDAIVREHRTNGKPLYVLSIDLTKAFDKIHPIAIE
FT                 NSLINKGVDQHTVKYIMSTYKDVDTTIECHGERSSPIRMCRGVRQGDTDSP
FT                 MLFNIAIDDLVTSINTTDGVQLGNSKIGCLLFADDIIFVSNTVHGINEHLR
FT                 RLRAFLEGTHMEVNPSKCRALQLARVPGTKRVVVDTKPKFSIDGASVPTLR
FT                 VLEQLKYLGHGYSQSGMLAPSPSNLESMLERLRRAALRPWQKLYILNRYLI
FT                 PRLIHCCQSSSITAGRLEYMDRLIRKFIKKTLHLPVTTPTAFLHAKIRDGG
FT                 LSIPCLRHQIGVIYRRRLQRISLQCDPDYRAAFQTPTVARLMRKLDTICQG
FT                 IPTARTAVARHWAMKLHEAALGNGLQYNTRASTSWILNPPPFWTGRDYIRA
FT                 MQLRIGLLPTGGAPYVKASAARCRHPTCDGRRETLSHVLQWCPVTHYPRIQ
FT                 RHDQATKDLSNHLKKKGLQIQEAPRLHTRDNRYIPDLLVIDQEKQTGNIIE
FT                 TTIIWERGGSLLEAAKLKRNKYNIPELLNNIKEKYNLQEQPRVFPFVVGAR
FT                 GGWPPTNHFLWQHYKLPDSLQRTIVCNVLRFGSFIHRYFMAHTWRSRKKSS
FT                 KS"
XX
SQ   Sequence 3726 BP; 958 A; 1031 C; 855 G; 882 T; 0 other;
     gtcccggggt cagcagccct cggacgtctc ggagcttagc tccaaatttc taccgctcca        60
     agaaacacaa ggaataaaac tcggataccc ggattggatt ctgttgacga ctcggcgacg       120
     tcccatggat atcccgtcga tacacgttcg gacgatgact gctcgacatg tccctcatgt       180
     ttgactgatc tttcatcgag gatcctggcg cagaggaaac aacatattcg acgctgcaat       240
     caacctcctc ccaatgagga tggaacctac acctgtgaga catgctcatc caagttccaa       300
     aaatacgccg gcctcaggca acacatcaaa cgcgctcacc ctacagacta caacgatcag       360
     gatctcgtgt tggccgtaaa acgagccacg accagcaggc ctaaatggac tccctccgag       420
     gagaagcagc ttgcactcct cgagtcgcag ctgcccgcag gcctatccca agcggagatc       480
     aacacacggc tagctgcact acacaccggc cgctccagtg aggccataaa gaaacagcgg       540
     cagaagctgt catataaaga tgcactttcg gggatctctt ccgcctcgac ttctgctgcc       600
     gggagcgtgc cgctatcacc accatctacc gactcacggt gcccggcgga gagcgttgcc       660
     gcacgtgcgg atttgccgtc tgacatccca gacgtggggt atgagcggcc gccgtcggac       720
     gccggtggca atagcaatag ttgtccacca ctactacaac actccgatat ctgccgcttc       780
     cttcgggagc tgtcaccctc gtgctcgctc gaggttcagc agcttattgc caccctgttc       840
     gactgcgcgg agtttgagga gttcgacccg catatttgcc acgcgattag tgagttgggg       900
     aaccataaag actcattacg tactgctggg ggtaggcggg ggggacataa acgtggcaag       960
     gttaaaagac ccgggaccaa gaggaaatcg aatcgtgcgg ctaagagatc cgcaaatttt      1020
     agcacgtatc agcgactgtt tgccgaaaat cctacgcaag ttgcacatgc tatcttggac      1080
     gacaaggaca tcaatgtcac cacatgccct aagatggccg agatcgaggc ctattttcgt      1140
     ccaatctttg aggaatgccc ggactactcc ggaccggatc cgcaacctcc aagtgaggtt      1200
     cggcatatgg attatcctat taccaccgcc gagacggagc tggccctgcg gcgcctcaag      1260
     cagtcagcaa gcggcccgga taaaattact cgcgacgacc tgaggaaggc gaacctggcc      1320
     gacgtggttg gactcctcaa tatcgtgttc ggtttgtgcc gcacaccaac cttgttgcgc      1380
     cacaatcgca ccgtgcttat acccaagaag ggcgatcttt ctctaacttc caactggcgt      1440
     cccatcacag tctcctctat cttctccaga ctcctacaca aaattttggc ctcaagacta      1500
     tctaacaata ttaaactaca tcacgctcag aggggtttta ctccgtgtga cggaattatg      1560
     tccagtagta ccatcctgga cgcaatcgtg cgtgagcacc gaacgaacgg caagcccctc      1620
     tacgtgttgt ccatagacct aactaaagcc tttgacaaaa ttcatcccat cgccatagaa      1680
     aactctctta tcaataaagg tgtcgatcaa cataccgtaa aatacattat gtcgacctat      1740
     aaagatgtcg acactaccat cgaatgccac ggagaaagga gttcgcctat caggatgtgt      1800
     cgcggagttc gacaaggcga tacggacagt ccgatgcttt tcaacatcgc aatagatgac      1860
     ctagttacat ccattaacac cacggatggc gtacagctgg gtaattccaa gatcggctgc      1920
     ttgttgtttg ccgacgacat aattttcgtc agcaacactg ttcatggtat caacgaacac      1980
     ctccgccgac tccgcgcctt cctggaggga acccacatgg aggtgaatcc ctccaaatgc      2040
     cgcgctcttc aactcgcgcg agtcccgggc actaagaggg ttgttgtcga caccaagcca      2100
     aaattctcaa tagatggcgc gtcagttccc actctgcgag tgctcgagca gctgaaatat      2160
     ttgggtcacg gatatagcca gagcggtatg ctggccccct cgccttccaa cctggaatca      2220
     atgttggagc gtctgcgtcg cgcggccctg cgtccatggc agaaattgta catattgaac      2280
     cgctatttaa tacctaggct tatacattgc tgtcagtcct ccagcattac ggcaggaagg      2340
     ctggaatata tggatcgcct tattaggaaa tttattaaga agaccctaca ccttccggtc      2400
     acaacaccta cagccttcct tcatgccaaa atacgcgacg gtggcctctc gatcccatgc      2460
     ctccgtcatc aaattggagt catatatcgt cgacggctac agcgtattag cctacaatgc      2520
     gacccggact acagggctgc ctttcaaaca ccaacggttg cacgacttat gcgcaagttg      2580
     gataccatct gccagggcat acctacagca cgcacagctg tggcccgtca ctgggccatg      2640
     aaactgcacg aggccgcact cgggaacgga ctgcagtaca acacgcgggc atccactagt      2700
     tggatactta acccgcctcc gttctggacc ggccgagatt atatacgtgc catgcagctg      2760
     cgcattggtc ttctcccaac cggcggcgca ccgtacgtta aggcgtctgc tgcgcgttgc      2820
     cgtcatccta cctgcgacgg caggagggaa actctctccc acgtgctgca atggtgcccc      2880
     gtgactcact atccccgaat tcagagacac gatcaggcca cgaaagattt atcaaaccat      2940
     ctcaaaaaga aaggcttaca aatacaagag gctcccagat tacacacacg tgataataga      3000
     tacattccgg accttctagt aattgaccag gaaaagcaaa caggaaatat tatagagacc      3060
     acaataattt gggagcgggg tggtagtctc ctcgaagcgg ccaaattgaa aagaaataaa      3120
     tacaacattc cggaacttct aaacaacatc aaagagaaat acaatctcca agagcagccg      3180
     cgggtcttcc cgtttgtggt gggcgctaga ggcggttggc ccccaacgaa tcattttctt      3240
     tggcaacact acaaattacc agattccctt caacgtacaa tagtctgcaa tgttctgcgt      3300
     tttggatcct ttattcacag gtacttcatg gcgcacacat ggcgcagcag gaaaaagtcg      3360
     agcaagtctt gactgcatgt ctagtttagt tttagtttta gttttcgttt tcacttactt      3420
     atatatatat accatatttc gctatcttta ccatatatat cgtatttgta tctttatttg      3480
     tatttgagtt atcttctttc ccgcgagagg gtttatttat gttacttcct tgccccgaag      3540
     ttttgaatca atattattat tactattttt gttttgttta gtttggacac atattcattc      3600
     atgcgcgaca caaggcagtc attgtctgac ttaaaggcct actagcgggc ccattcatac      3660
     ttcgtctgga tgtcaaataa tacactagac taacgcggag ctcttcctga gaacctgtgt      3720
     gtatca                                                                 3726
//
ID   R2-5_MR     repbase;    DNA;    INV; 3115 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-5_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3115
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. The 5' end is uncertain. It is
CC   followed by AACGGCGGGAGTCAACTATG in a 28S rRNA gene.
CC   Based on AFJA01011500 and AFJA01013616.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2707
FT                 /product="R2-5_MR_1p"
FT                 /translation="NARGRGVHEQKAHKQWYDQKDADCIVNLKRPWSSEEL
FT                 CMLARHEARLTIAGARFVNQELMKAFPSRTLEAIKGQRRGQEYKNLVLQYV
FT                 EESNNGVERAPVRSESTELGDESYKTEIVRLLSELPPLRDDKFGGKELQRI
FT                 CDNLATWSVGTILENLEVYLLNVWPLPTTKGKRRVPTPKQPSSRRKARRRE
FT                 YALTQRAWKKNPCNCLRSILKYKKSGATPPKDVMVAYWRNVMTANEETTPG
FT                 VDIVEELKEVMCPVTPGEVKQAFPEMTTAPGPDGLTARQIRAVPLEVLVRI
FT                 FNIFLVCGRLPKHLLESRTILIPKKDNASEPGDFRPITISSVMTRTYHKVI
FT                 ARRFAGSIELDKRQKAFXPVDGCAENIFDLDMVLRYHRESFKSIFMASTDV
FT                 AKAFDSVSHRAMYDTLRSKGVPAPLVEYVRDVYERSTTRLTGSDWQSDLIR
FT                 CGVKQGDPLPPIIFNMIIDRLLKLIPPEIGVDVGESHFNALAFADDLLFMA
FT                 STTKGLQTCLDLASEYLLKCGLRVNAXKSFTVALRNVPHVKKSXVDGKVRF
FT                 RCLGHEMPSLTREDQWRYLGVPFTPEGRSSARADEQLKQTLGKLTSAPLKP
FT                 QQRLFALRVVVLXGLHHLLSLGNVTLSLLRKVDKLVRAAVRKWLDLPHDVA
FT                 NAFIHANAKDGGLSIPSMRWLMPLRRMERLKNLVSRGHTASXWLAXEIERA
FT                 KRRLKEGRELVDETTKLRKRWADLLHSSCDGQGLRSSSDIPQQHQWITDGT
FT                 RLXXGRDFVNXVKLRINALPTRSRTARGRVKDRLCRAGCNAVESISHVLQN
FT                 CHRTHKARIDRHQAIVTYVKRALNTTYELVEEEPQFTTPEGLRKPDLIAKK
FT                 GDMALAVDAQVXSDXMSLDEAHKRKAEYYQGLSGSIMRKYGVKAVKYTP"
XX
SQ   Sequence 3115 BP; 833 A; 776 C; 870 G; 609 T; 27 other;
     gaatgccagg ggccgtgggg tacacgaaca aaaggcccac aagcagtggt atgaccaaaa        60
     ggatgccgac tgcatcgtca atctaaagag gccctggtcc tctgaagaac tgtgcatgtt       120
     agcgagacac gaggcccggc tgacgatcgc cggagccaga tttgtaaatc aggagctgat       180
     gaaggccttt cctagtagga cgttggaggc gataaaggga caaaggaggg gccaggagta       240
     taagaacctg gtcctccagt atgttgagga aagtaacaac ggcgtcgagc gggcgcccgt       300
     ccgatcggaa agcactgagt tgggggacga gtcctataag accgagatag tgaggcttct       360
     gtccgagctc cctcccctta gagacgataa atttggagga aaagaattgc aacggatctg       420
     tgacaatcta gcgacgtggt ccgttggcac catcctggag aatctagagg tttacctctt       480
     gaacgtatgg cctttaccaa ccaccaaagg caaaagaagg gttccaacac ctaagcagcc       540
     ctcctctaga aggaaagcca ggcgcagaga gtatgcgctt acgcagcgcg cctggaaaaa       600
     gaacccttgt aattgcttgc gttcgattct aaagtacaaa aaatctggtg ccactccccc       660
     aaaagacgta atggtggcgt actggcgaaa tgtgatgacc gccaatgagg agacgacgcc       720
     gggtgtcgac atagtcgaag aattaaagga ggtcatgtgt cctgtgacgc cgggggaagt       780
     gaagcaggcc ttccccgaaa tgacaacggc gcctggaccc gatggtctta ccgctagaca       840
     gataagggct gtgcccctcg aagtactagt caggatattt aacatcttcc tggtctgcgg       900
     tagactgccc aagcatctgc ttgagtccag gacaattttg atacccaaaa aggacaatgc       960
     ctccgaaccc ggcgattttc gwcccataac gatctcctct gtcatgactc ggacttacca      1020
     taaagtcatc gccagacgtt tcgcggggag tattgagctc gataagcggc agaaggcgtt      1080
     cstcccggtg gacgggtgtg ccgagaacat attcgacctc gacatggtgc tgcgctacca      1140
     ccgagagagc ttcaaatcca tctttatggc gtctacggac gtggccaagg cgttcgactc      1200
     ggtgtcccac cgagcmatgt acgacaccct aagatccaaa ggtgtgcccg cgccattggt      1260
     agaatacgtt cgtgacgtct acgaaagaag cacgaccaga ctgacgggaa gcgactggca      1320
     gtcagacctg atcagatgtg gagtgaaaca aggcgatcca ctgccgccga ttatatttaa      1380
     tatgatcatc gaccgcctac taaaattgat accgccggag attggggtcg atgtgggaga      1440
     gagccatttc aacgcgctcg cstttgcaga tgatctgctm tttatggcct cgacgaccaa      1500
     aggcctacag acctgcctag acctggcctc cgagtatctc ctgaagtgtg ggttgagggt      1560
     caatgccsgg aagtctttca cggtggcact taggaatgtg ccccacgtca agaagtcagw      1620
     agtggatggg aaagtgcggt tcaggtgtct gggccatgag atgccctccc tgacgcgcga      1680
     ggaccagtgg aggtaccttg gggtcccctt cactccagaa ggtcgctcat ctgcgagagc      1740
     agacgaacaa ctgaagcaga cattgggcaa actaacatck gccccactca aacctcaaca      1800
     gaggctattt gcattaaggg tggtcgttct tcmggggctc caccacctac tgtccctcgg      1860
     gaatgtcacc ctwagcctgc ttagaaaagt cgacaagttg gtgagggcgg cagtcaggaa      1920
     atggctagac ttgccccacg atgtcgccaa cgccttcatc cacgccaatg cgaaggacgg      1980
     cggtttgtcg atcccctcta tgcgctggct tatgccgcta agaagaatgg agagactgaa      2040
     gaacctggtc tcgaggggac acaccgcctc ckgttggttg gccmaagaaa tcgaaagggc      2100
     caagagaaga ttaaaggagg ggcgagaact tgttgacgag acaacaaagc tccgaaagag      2160
     atgggcagac ctcctccata gctcctgcga cggacagggg ctwcgaagct ccagtgatat      2220
     tccacagcaa caccagtgga tcactgacgg gactcgactt ktgwcgggaa gggactttgt      2280
     gaactswgtc aaactgcgta ttaacgcact cccgacgagg tcccgaacgg cgaggggccg      2340
     ggtcaaggac cgcctatgta gagccggctg taatgcggtt gagtctatca gccatgtcct      2400
     ccaaaactgt cacaggacgc acaaagcgcg gattgacagg catcaggcca ttgtgacata      2460
     tgtcaaaaga gckctaaaca cgacctatga gctcgtagag gaagaacctc agttcacaac      2520
     accagaggga ctgaggaagc ctgaccttat tgckaagaaa ggagacatgg cactggcggt      2580
     agacgctcag gtgkkgagcg acckcatgag cctggatgag gctcacaaaa ggaaggccga      2640
     atactatcag ggcctgagcg gatctattat gaggaagtac ggggttaagg ccgtgaagta      2700
     cacaccgtga ccctatcwtg taggggaata tggagcaaaa gatcagctca aacgctcttg      2760
     gaagataaga tcattaaata cagggaactc aaaatcctgt cgacgagagc gttaattggg      2820
     ggtctcagtg gcttctggcg cttcaacaag acaacctccg cagtcatgag aacttaggaa      2880
     tgacctgtgc cgagacaaca gcgggcgctg ctgctatawk aaggacaatg agatcttgat      2940
     ggaaggagaa atccgcgtgc tgcctgcgcw cttcaggcac aacacgagga ggtggttttt      3000
     agtgggtatt ckaacacctg tgagccccac ataaccagcg ggaccagcgc ccgctggtat      3060
     ccgtaaaagg attttcccct ccttgcaaaa aaaaaaaaac caaattattg tacct           3115
//
ID   R2-6_MR     repbase;    DNA;    INV; 2030 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-6_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-2030
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   The 5' end is truncated. It is followed by TAGCCAAATGCCTCGTCATC
CC   in a 28S rRNA gene.
CC   AFJA01009847 3355-5384.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..393,688..1011,968..1276,1280..1678,
FT                 1734..2027)
FT                 /product="R2-6_MR_1p"
FT                 /translation="PEGVRIPDIVASLGATTLVLDAQVTSDTSCLSAPHNS
FT                 KVNYYRNNNNLISQIRTVTRSSTIHVLAATLSWRGVWCPESANKVLELEVI
FT                 RKCDQPVLSTRVIIGGLAAFRAFNRSTSTTNMNRVHAIRRGIGNSQMSHNL
FT                 MIDVNLVVKLDLDNFNLQNVKTCITIAPKDWLIWSPVMTYLYLIHRCRRLN
FT                 ERLRLYIQNCGASPVLITLLMYAMNLQLSREIFLDLLLYQKYKKVKQNSTF
FT                 YYTRSTKKLNKIANASAPGIDKIKKYYLLIAGVDEILTALYNLLILKSFYP
FT                 EDWRNNKTILIPKSGKNQNDVKNWRPLTTSSMLVGLFFGLLDSRLREFITH
FT                 PRQKCFVPLNGCFANVSALNAAIEVAKLDDGVCVVTDIEKAFITVPHSSIT
FT                 VRYENNDSLKEAHEEKIQKYAPIMPKIREMFKQQRARVISIVIGSRGALPA
FT                 TTKNELRRLSIRKDNLITILLIAFRSSIEIRVYISYNIATLSFSFTIIPKM
FT                 LVFVSFYHQSLRFLFVIVFVLHFSFVSFFLFVIILSTLVVLSLYLYMYYIC
FT                 ISFLYYCTRQVRGIPCTVRPSRMGAR"
XX
SQ   Sequence 2030 BP; 579 A; 436 C; 359 G; 656 T; 0 other;
     cccgagggcg tgcgaatacc agacatcgtt gcctccctcg gagcaacaac gcttgtctta        60
     gacgcacagg taaccagcga tacttcgtgt ttatcagcgc cacacaatag caaagtcaat       120
     tattatagga ataataacaa tttgatatcc cagatccgaa ctgttactcg ctcatctaca       180
     attcatgtct tagccgctac attatcttgg cgcggagttt ggtgtccaga atcggcgaac       240
     aaggtattgg aattggaggt tatcaggaaa tgcgaccaac ctgtcctatc aacgagggta       300
     attataggtg gacttgcggc gtttagagca tttaaccgat ctacgtcgac gacaaatatg       360
     aaccgcgtgc acgccatacg tcgtggtatt ggctagctcg aagcactaca ggtgtctgtc       420
     tctcgctcta tgtctctcat agagaaatat ataaattttt ttaatttact ttcttcttct       480
     tttttttacc gttactcaaa aatgagtata acttaattta ttttgttttt attttctttc       540
     tctccttctt cctatttacc ttcttcgtct atctcccaat ccccccttct tttttttaac       600
     cccttctctt cgcgtcgagg tttgtctgct ctcttaggca taatgcgaac atgtcttttc       660
     tacacattct gtcatcatgt gatataaaat agccaaatgt cccacaacct aatgatagac       720
     gttaacctgg tcgtaaaact agatttagac aatttcaatt tgcaaaatgt caagacctgt       780
     atcacaattg ccccaaaaga ttggctgata tggtcgccag taatgacgta tctctatttg       840
     attcatcgtt gccgccgcct aaacgagagg ttgagactct atatacagaa ctgcggggcc       900
     agcccggtcc tcataacgtt attgatgtac gctatgaacc tacaattgag tcgcgaaata       960
     tttttagacc ttttactata ccagaagtac aaaaaagtta aacaaaatag ctaatgcatc      1020
     agctccgggt atagataaaa taaaaaaata ctatttgctt atcgcaggag tcgacgaaat      1080
     cctgacggct ctgtataatc ttttaatatt aaaaagtttt tatcctgaag actggcgcaa      1140
     taataaaaca attttaatac ctaagtctgg aaaaaaccaa aatgacgtaa aaaactggcg      1200
     tccacttact accagctcca tgcttgtcgg actgttcttc ggccttctag actctcgcct      1260
     cagagaattc atcacgtagc atccgcgcca aaagtgtttc gtgcccctta atggttgctt      1320
     tgccaatgtt tccgcactta atgctgcgat tgaagtggca aaattggacg acggtgtatg      1380
     tgtggttaca gatatcgaga aagctttcat taccgttccg cattcttcca ttactgtccg      1440
     gtacgagaat aatgacagcc taaaagaagc gcacgaggaa aaaatacaaa aatatgcacc      1500
     catcatgcca aagattaggg aaatgtttaa acagcaaaga gccagagtaa tatctattgt      1560
     aattggctca agaggtgcgc ttccagctac cacaaaaaac gaactgcgcc gattaagcat      1620
     aagaaaagat aacctcatca ctattttgct aattgcattt agaagttcga tcgagattta      1680
     gaataagttt ttagattagg gttaacaact aattaaaata atgatctcta tagcgcgtat      1740
     atatttctta taatattgct acattgtcat tttcatttac cattatacca aagatgcttg      1800
     tttttgtttc gttttatcat caatcgctgc gtttcctttt tgttatcgtt tttgttttgc      1860
     atttttcctt cgtttcattt ttcctatttg ttattattct ttccactcta gtggttttat      1920
     ctctttactt atacatgtat tatatctgta tatctttttt gtattattgt acacgccaag      1980
     tacggggcat accgtgcaca gtccgcccat ctagaatggg cgcaagatac                 2030
//
ID   R2-7_MR     repbase;    DNA;    INV; 3609 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-7_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   It follows GTAACTATGACTCTCTTGAG in a 28S rRNA gene.
CC   AFJA01013371 51-3659.
XX
FH   Key           Location/Qualifiers
FT   CDS           27..3395
FT                 /product="R2-7_MR_1p"
FT                 /note="CCHH zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="SGPATSTFGETKSRLCEPTSALGCRPGAVVIQWAQIH
FT                 KEKRKRIVGWPLGHLGSPTSLKLRHPRLQAKRIVPVLAELMQCLCARHVSG
FT                 RSPQKSAWAFTLEERTSACGVDAMFVCSTCQRSFATKIGLGVHVRRAHVEV
FT                 ANAAISVERVKDRWSEEERRIMAAVEVRGVLSGARFINEYIMSHLQTSRTL
FT                 ESVKGTRKNPKYKELVATLLEEARTSVREESPRSAVNDSATQPSGPSDTRS
FT                 LRTEHLFTESTEPFEHRIRELIGDLEGVTDFRAELLVSIAEQQLQGDEVAE
FT                 SLTRWLGEVFKPENQQQQVQRKRRRQRKAPVSGQLPKWRERRRDYAAMQTL
FT                 FHRNPSLAAGRVLDGKNESRPPDLPEMTAFWEPILTEQSAEHRAVGPASEK
FT                 SELCSVWGPVEKEELLSSVPPLDTAVGPDGVTARQWRAVLPAVRALLYNII
FT                 LKRGSFPASMLESRTVFLPKKQHSVNPADFRPISIASVVVRQLHKILAMRL
FT                 RRTNLVDERQRCMDDGCAENITVLASLLDDARHGLKELHLVSLDCAKAFDS
FT                 VSHHAIDATLKECGLPAGFVQYISRTYSDSSTRLEVGRNRSEPIKTNRGVR
FT                 QGDPLSTLIFCLCFDRVARTLSPHIGYDLNNTRISTLLYADDAFLVSTTAP
FT                 GMNILLRSVEESAGEVGLSFNTSKCSALSLIPSGKEKKMKVGTTPTFKTSQ
FT                 GFITQITPSQEWRYLGVDFQYSGPKKASRSLKIELERISKAPLKPQQRLLI
FT                 LRVYLLPRYYHHLVLSRTTLGHLRGLDLQVRAAVRRWLSLPRDIPIAYFHT
FT                 TAKEGGLGLPAFETSIPCLMLARLRSMETSTCKAARAAVQGFWVQKRIHWA
FT                 TAALTKNGEALTCKADVDRWWASRLHKSVDGRELRECSGVGSSSTWVNSAL
FT                 NITGRDYVQYHHVRINSLPTRIRTSRGVRREGMEVTCRAGCQVTETAAHVI
FT                 QSCHRTHGGRILRHNAVCKVLASGLRDKGWEVREEPKLRTRQGLRKPDIVA
FT                 IKDGVARVIDAQVVSGSGPLDEAHETKRKYYSDNGDVTAAIARECNIAPSN
FT                 VAYSSCTISWRGVWSPRSAADLLQVGLSKKLLGFITLRVLRGSHLNWTRWN
FT                 KMTTMRVHHQRTGIG"
XX
SQ   Sequence 3609 BP; 878 A; 949 C; 1021 G; 761 T; 0 other;
     tctagttagc aagcggcccc ctctaatcgg gtcccgccac gagtaccttc ggggaaacca        60
     agagccgcct ctgcgaacct acctccgcat tgggttgccg gcccggtgcg gttgtaattc       120
     agtgggccca aattcacaag gaaaagagaa aaagaattgt cggttggccc ttagggcatc       180
     tcggatcacc gacctcactg aaacttcgac acccgcgcct gcaagcgaag cgcatagttc       240
     cagtgcttgc ggagttgatg caatgtttgt gtgctcgaca tgtcagcggc cgttcgccac       300
     aaaaatcggc ttgggcgttc acgttagaag agcgcacgag tgcttgcgga gttgatgcaa       360
     tgtttgtgtg ctcgacatgt caaaggtcgt tcgccacaaa aatcggcttg ggcgttcacg       420
     ttagaagagc gcacgtggaa gtcgcaaacg ctgccatatc agtggagcgc gttaaggatc       480
     gttggtcgga ggaggagcga agaataatgg ctgccgtcga ggttcgagga gtactctctg       540
     gggctcgttt tataaacgag tacattatga gtcatctcca gaccagccgg accctcgaat       600
     ctgtcaaagg aactcggaaa aaccccaaat acaaggaact tgtcgcaacc ttactggaag       660
     aggcacgaac cagtgtgcgg gaggagagtc ctcgtagtgc ggtcaacgat agcgccaccc       720
     aaccatcagg cccctctgat acacgaagcc tgcgcaccga acacctgttc actgaaagca       780
     ccgagccttt cgaacatcgg atccgagagt tgatcgggga tcttgaggga gtgaccgact       840
     tcagagctga gttgctggtt tccattgcgg aacagcagct tcaaggcgat gaggtggcgg       900
     aatccctgac tcggtggctt ggcgaggttt ttaaacccga gaaccaacaa caacaggttc       960
     agcgtaagcg tcggcgacaa agaaaggccc ctgtcagtgg gcagctgcca aagtggcgcg      1020
     agaggcgaag ggattatgca gcgatgcaga ctctcttcca tcggaacccc agtcttgctg      1080
     ctggtcgtgt gctggacggc aagaacgagt cccggccccc ggatctgcca gaaatgacag      1140
     cgttttggga accgatactc accgagcaat ctgccgaaca tcgggcagtt gggccggctt      1200
     ccgagaaatc ggagttgtgc tcagtatggg gtccagtaga gaaagaagaa cttctctcct      1260
     ccgtgccgcc gttggacacg gctgttggcc ctgacggtgt caccgccaga caatggagag      1320
     cggttttacc ggccgttaga gctctcttgt ataacatcat cctcaagaga ggctctttcc      1380
     ccgcctcgat gctggaaagc agaaccgtgt tcctgccgaa gaagcaacat agtgtcaatc      1440
     ctgctgactt tcgacccatc agcatagcgt cggtcgtcgt ccgtcaatta cacaagatct      1500
     tggccatgcg ccttcgccgt acgaacctcg ttgacgaaag gcaacgatgc atggatgacg      1560
     gatgtgccga gaacatcacg gtgttggcct cgctgctgga cgatgcgagg catggtctga      1620
     aggagctgca tctggtttcg ttggattgtg ctaaggcgtt cgacagcgtt agtcaccatg      1680
     cgatcgacgc aacactaaaa gaatgcggtc tgcccgcggg atttgtgcaa tacatctccc      1740
     gcacatattc cgacagttcc accaggctcg aggtcggaag gaatcggtcg gagccaataa      1800
     agaccaaccg gggagtgcgg cagggtgatc ccctgtcaac cctcatcttc tgtctgtgct      1860
     tcgatagagt cgcgcgtacc ctctcaccac acattgggta tgaccttaat aacacccgca      1920
     tcagtactct gctttacgct gatgatgctt tccttgtctc gacgactgct ccggggatga      1980
     acatcctgct ccggagtgtg gaggaaagtg ccggtgaggt ggggctttct tttaacacct      2040
     cgaaatgctc agccctctcc ttaattccat ctggaaagga aaagaaaatg aaggtcggaa      2100
     cgactccgac gttcaaaacg tcgcagggtt ttattaccca gataacgccc tcgcaagagt      2160
     ggaggtatct aggagtcgac ttccaatact ccggaccgaa aaaagcaagt cggagtctca      2220
     aaatcgagct ggaacgcatt tcgaaggccc ccctcaagcc gcaacagcgg cttttaatcc      2280
     tcagagtcta cctgctgccg cgatattacc atcatctcgt actctccagg acaacccttg      2340
     gtcaccttag gggcctggac ctgcaagtgc gcgcggctgt tcgtaggtgg ctgtctctgc      2400
     cgcgcgacat ccccattgcc tacttccaca caacagcgaa ggaagggggt ctgggtcttc      2460
     cggcgtttga gacgtccatt ccatgcctga tgttagcccg cttgaggtcg atggaaacct      2520
     cgacttgcaa ggcggctagg gcggcggttc aaggcttctg ggtgcagaaa cgcatccatt      2580
     gggctacggc cgctctcact aagaacggag aagccctaac atgcaaggcg gacgtcgatc      2640
     ggtggtgggc cagtaggctc cacaagtcag tggatggtcg cgaactgcgt gagtgctcag      2700
     gcgttggctc gtccagcacc tgggtaaatt ctgcgcttaa catcaccggc agagattacg      2760
     tgcagtatca tcacgtccgc atcaattctc tcccgactcg cattaggaca tctcggggtg      2820
     tgcgaagaga ggggatggag gtcacgtgcc gcgctgggtg tcaggtaact gagaccgcgg      2880
     cgcatgtcat ccagtcttgc caccgcacac atggaggtcg gattcttcga cacaatgccg      2940
     tgtgcaaagt gctggcgtcc ggccttcgcg acaagggatg ggaggtgcgt gaagagccaa      3000
     aactgcgaac gcgacagggt ctgaggaagc cggacatagt ggcgataaag gacggcgtcg      3060
     caagggtgat agacgcacag gtcgtgagtg gatctggacc gcttgacgag gcgcatgaga      3120
     ccaagcgcaa gtattattcc gacaatggcg acgtaactgc tgcgattgct cgtgagtgca      3180
     acattgctcc atcgaatgtt gcatactcgt catgcactat ctcttggagg ggtgtgtggt      3240
     cgcctcggtc cgctgcagac ctactacagg tgggtctgtc caaaaagctc ttgggtttca      3300
     tcaccctaag ggtcttgaga ggcagtcatc taaattggac acggtggaac aaaatgacaa      3360
     cgatgcgcgt acaccatcag cgaacaggta tcgggtaaat gtcgaaccga attttgggta      3420
     acgtgcaccc caccatcctt aatcggcagc acgcaataaa gccgtgggca gtggttttag      3480
     tgggtagtca ttaggagtcc cacagtaccc agcgaacatc ttagtgggtc tgcgtaaacg      3540
     catttccact gcctatcctc cgggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      3600
     aaaaaaaaa                                                              3609
//
ID   R2-8_MR     repbase;    DNA;    INV; 3522 BP.
XX
AC   .
XX
DT   13-SEP-2016 (Rel. 21.09, Created)
DT   13-SEP-2016 (Rel. 21.09, Last updated, Version -1)
XX
DE   R2 non-LTR retrotransposon from alfalfa leafcutter bee.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2-8_MR.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-3428
RA   Kojima K.K., Seto Y. and Fujiwara H.;
RT   "The wide distribution and change of target specificity of R2
RT   non-LTR retrotransposons in animals.";
RL   PLoS ONE, in press (2016).
XX
DR   [1] (Consensus)
XX
CC   It follows GGAGTAACTATGACTCTCTT in a 28S rRNA gene.
CC   AFJA01012854 3522-1.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3395
FT                 /product="R2-8_MR_1p"
FT                 /note="CCHC zinc finger, reverse transcriptase and
FT                 restriction-like endonuclease."
FT                 /translation="GPQRFHRRPCSQPRWRQVPTPPPRGVVRAPVFPVADG
FT                 ALAERGKPRTAHRVASPLGRFAVGPQGKRNENYFRRRPRSVGPTVNAPSEQ
FT                 IPPSSVPQDVSVTPEVVLPFPCPDCDRAFASKIGLGVHRRSAHPAVVNEEI
FT                 DVRRVKRQWGDEELRLMAREEAMAVRQGIRFINQHLMTVVPGRTLDAIKGV
FT                 RRGQKYRDLVAAAMEDLNASSVGFGSPEPSSPPPPESPIAVSTPCNPARAR
FT                 STPPGLSPSSISFLGHLGQDIKGAIMGLIPVVLNIRGWDTDNLSHIAQDCL
FT                 EGIDVSEGVSSWLSSVFPPQAVGHLRPPRRPNARRLGRKARRRREYARTQQ
FT                 LFRSNMSWAAREILDATSRDNTVTPDVGRMAQHWGPFVRQPSKVVSPAPPT
FT                 RPKPELAHLWYPVSCEEVAATTLPPQSAPGPDGIGVRQWRAVPPSVRALLY
FT                 NIVLATGGFSPALLTSRTVFVPKKSGDPDSPGDYRPISVTSVVVRQLHKIL
FT                 ANRLRASGLVDLRQRCFDDGCGENIAALAAVIHDSRSHLRELHVASLDIAK
FT                 AFDSVSHQAIARVLTTLGVPCELVSYVTTMYARSSTMFEVRGQRSELFPVG
FT                 RGVRQGDPLSPILFCLVVDSILRTVPPDVGYDLGGSRLNALAYADDFLLFA
FT                 ASVWGMQKTLGLVEQRAGEYGLTFNAQKCSVLSLVPSGKDKKMKVITTPLF
FT                 HLGRQAFIPQITTTAEWRYLGVDFRSTGPKKSRIDLTTYLDRIGKAPLKPQ
FT                 QRLKLLRCFLLPRLYHVLVLGRTTLGALRALDVLTRAAVRKWLRLPKDTPM
FT                 AFFHAPVASGGLGIPPLSTTVPGLMRERLLNLERSQSSQIRAIAELPWVAR
FT                 KLHWATRALTREEGVLTSKHLRDKWWTYRLYTSADGWELRDCIKSPLSTRW
FT                 VDADSLGIPGRDYVQHVHVRINALPTLMRTSRGLRRHGQATQCRAGCQSTE
FT                 TAAHVIQGCYRTHGGRILRHNAVCRTLASGYRKIGWTVHEEPIFNTTVGRR
FT                 KPDLVCVKAEEVNVIDAQVVSGSTPLDDSHERKLRYYADNASLVEGIAARY
FT                 GVRKEKVSFSTCTISWRGVWSSKSADWLLGSGLTAGLLRGITTRVLQGSHT
FT                 NWSRWSRMTSFDPPVPWDRRGIG"
XX
SQ   Sequence 3522 BP; 737 A; 999 C; 988 G; 798 T; 0 other;
     tcggaccaca aaggttccac cgtaggcctt gcagccagcc acggtggcgc caagtgccaa        60
     cccctcctcc tcgtggtgtg gtccgggcac cggtatttcc ggtggctgac ggggctctgg       120
     ctgaacgggg gaaaccccgt acggcccatc gggttgcctc cccgttgggt cgttttgcag       180
     ttggccctca aggaaaaaga aatgagaatt atttccggcg gaggcctcgg tccgtcggac       240
     caactgtgaa cgctccgtcg gagcagatcc caccttcgtc tgttccccag gacgttagtg       300
     tgaccccaga agtagtcctg ccattcccgt gtcccgactg cgatcgtgcg tttgcgtcga       360
     agatcggctt gggtgtccat cgaagatcgg cacatccggc agttgtcaac gaggagattg       420
     acgtgcgcag ggtaaagcga caatggggcg acgaagaact tcgcctcatg gcaagggagg       480
     aagccatggc cgtccggcaa ggtatccgtt tcatcaacca acacctgatg accgtggtcc       540
     ctggtcgtac tcttgatgct atcaagggtg ttcggcgggg acaaaaatat cgggaccttg       600
     tcgcggctgc catggaggat ttgaatgcgt cgagtgttgg tttcggtagc cccgagccat       660
     cgtcgccgcc tcctcccgag tcgccaattg cggtttccac accgtgtaac cctgcgcgag       720
     ctcgatcaac ccctcctggc ctatcgcctt ccagcatttc ctttcttggg cacctcggtc       780
     aggatattaa gggtgccatt atgggtttaa tcccagtggt ccttaatatc cgagggtggg       840
     acaccgacaa cttgtcccac atcgcccaag attgtctgga gggtattgat gtcagtgagg       900
     gggtgtcatc gtggttgagc tctgtctttc ctcctcaagc cgttggccat ttgcgaccgc       960
     caagacgtcc caatgcccgt cgtctggggc ggaaagcccg acgtcgacgt gaatatgctc      1020
     gcactcagca gctattccgt tcgaatatga gttgggccgc acgtgagata ttggatgcca      1080
     cgagtagaga caatacggtc acccccgatg ttggacgtat ggcccagcat tggggaccgt      1140
     ttgttcgtca accctcgaag gttgtctcgc cagcaccacc aaccaggcct aagcctgagc      1200
     tggcccactt gtggtatcct gtctcgtgcg aagaggtggc tgcaacgacc ttgccacctc      1260
     aatccgctcc cggacctgac ggcattggtg ttcgtcaatg gagggccgtc ccaccatctg      1320
     ttcgggccct cctctataac atcgtcctcg ctactggtgg tttttccccg gcgttactta      1380
     cgagtaggac tgtcttcgtc ccgaagaagt ctggagaccc tgactctccg ggcgattatc      1440
     ggcctatctc ggtgacgtcg gtggtcgtta gacaactcca caagatcctc gcaaataggc      1500
     ttcgcgcgtc cggtcttgtt gaccttaggc aacgttgttt cgatgacggc tgcggcgaaa      1560
     atatcgctgc cctggctgcc gtcattcatg attcccgctc tcacctaagg gaactacacg      1620
     ttgcctcttt ggacatagcg aaggccttcg attcggtctc ccatcaggcc attgcgaggg      1680
     tcttgaccac ccttggagtg ccgtgcgaac ttgtgtcgta cgtaaccacc atgtatgcga      1740
     ggagtagtac gatgtttgag gtgcgtggtc agaggtcaga gctctttccg gttggcagag      1800
     gcgtcagaca gggtgatccg ctttctccta tactgttctg ccttgtggtg gacagtatat      1860
     tgaggacggt cccccctgac gtcggatacg accttggggg aagtcggctt aatgctcttg      1920
     catacgccga tgacttcctc ctatttgccg cctcagtgtg gggtatgcag aagacgctag      1980
     gcttggtaga gcagcgagct ggggagtatg ggctgacgtt caacgcccag aagtgctcgg      2040
     tcctgtccct tgtcccgtcg ggcaaagata agaaaatgaa ggtcattacg acccccctct      2100
     ttcatctggg gcgccaggcc ttcattccgc aaataacaac cactgcggaa tggagatacc      2160
     tcggtgttga ctttcgctcg acgggaccca aaaagagtag gattgattta acaacctact      2220
     tggacaggat tggtaaagcg ccactgaagc cgcaacagcg attaaagttg ttgcgctgct      2280
     tcctactccc ccgtctctat catgtcctgg tgctcggacg caccacactt ggggctttaa      2340
     gagctcttga cgtactgaca cgtgccgcgg tccgcaaatg gcttcgactg ccgaaggaca      2400
     ccccaatggc cttcttccac gcgcccgtcg cgtctggcgg cttgggcatc cccccgcttt      2460
     ccaccactgt tccaggtttg atgcgcgaac gtctgctcaa cctggaacga tcgcaatcgt      2520
     cccagattag ggcgattgct gagctcccgt gggtggcgcg taagcttcat tgggctacgc      2580
     gtgcgctcac acgcgaagag ggagttttaa cctcaaaaca cctgagggat aagtggtgga      2640
     catatcggct gtacaccagc gccgatggat gggaattaag ggattgcatc aagtcgcctt      2700
     tgtcgacgcg atgggttgac gcagactccc tcggcatccc cggtcgggac tacgtccagc      2760
     acgtccatgt ccgcattaac gcactcccga cgctcatgag aacgtcgcgt gggttgcggc      2820
     ggcatggaca ggccacccaa tgtcgtgccg gctgtcagtc caccgagacg gccgcgcatg      2880
     tcatccaagg gtgctaccgc acccatggtg gccgtatcct gaggcataat gctgtgtgtc      2940
     gcacactagc ctcaggatac cgtaagatcg gctggacggt ccatgaagag cccatcttca      3000
     acacgaccgt gggaagacgc aaaccggatt tggtctgcgt caaagctgag gaagtcaacg      3060
     tcatcgacgc acaagtcgtc agcggatcaa caccattgga cgactcccac gagcgtaagc      3120
     ttcggtacta tgccgataat gcttcgctcg tggagggtat tgccgcccga tatggtgtca      3180
     ggaaagagaa agtgtctttc tcgacctgca ccatatcatg gaggggcgtg tggtcgtcta      3240
     aatccgctga ttggctgttg ggctcgggac ttactgcggg actgctacgc ggaattacaa      3300
     cacgcgtctt gcagggtagt cacactaact ggtccaggtg gagtcgtatg acatctttcg      3360
     acccacctgt accttgggac aggcgcggga tcgggtgaaa ctctgacgga catcccacgc      3420
     ggggacagcc gcccccttta tttcccctcg aaatattccc ctggcggcca atatatcaaa      3480
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa                         3522
//
ID   R2Amel      repbase;    DNA;    INV; 5002 BP.
XX
AC   .
XX
DT   19-FEB-2010 (Rel. 15.02, Created)
DT   19-FEB-2010 (Rel. 15.02, Last updated, Version 2)
XX
DE   R2Amel - R2 non-LTR retrotransposon from the honeybee Apis
DE   mellifera.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2Amel.
XX
OS   Apis mellifera
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Apidae; Apis.
XX
RN   [1]
RP   1-5002
RA   Kojima K.K. and Fujiwara H.;
RT   "Long-Term Inheritance of 28S rDNA-Specific Retrotransposon R2.";
RL   Molecular Biology and Evolution 22(11), 2157-2165 (2005).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1096..4494
FT                 /product="R2Amel_1p"
FT                 /translation="MSSNEEGASDTGAPGPGVPVADVSAADGRATYDDHGM
FT                 STDYEKQTIELPLNGQIQCLWCHIEGRNQRFLQESQYLKHKDTQHPKGEII
FT                 WRCAACQKEFEKLHGCRCHLPKCKGRKEAKGVAKFKCDSCEESFLTQRGLS
FT                 MHELHRHPAIRNLKRTQGTSRGNTRPINRASVWSKEETDLLIKLNERYKHL
FT                 KQPNVALKEYFPDKTLKQISDKRRLLPVQEPEDVATTDETGPPPSDSSEES
FT                 IYESATEDEGGGDMQQTAPNDSWKEPFIQSIRTNHLEEEDSLRKVEEAIER
FT                 MAMNEGVTEQEVGTLLEQFVDSLTQSPTTERKGSRRKSQKTTKRKTTHNNR
FT                 KKFLYAKHQELYKKSPRRLLELALSGESSSGREVVNLPEADSVGPLYKSLW
FT                 GQIGPEKTHRNQPMCNNIDMSEIWTPIALESLVEKFKKIKSDTAAGADQIK
FT                 KFHLRKKGALHVFAKLCNLLMLHRIYPAQWKTNRTTLIPKPGKSAEEVENW
FT                 RPITIGSLLGRIYSAMIDRKLRSKIKQHIRQKGFTQEDGCKNNIAILSSAL
FT                 TKMKEDSGGIITIIDISKAFDTVPHGEISQSLMNKGVPSPICEYIQKMYIG
FT                 CKTIIYCRDKKTLPVDILRGVKQGDPLSPLLFNLIIDPIIGTLDETTEGIK
FT                 LENENISVLAFADDLVLLAKDKETADKQNRLINEYLDDLKMKVSAEKCTTF
FT                 EIKRQNKTWFLGDPQLTLGQQRIPYADPEAAIKYLGTNFNPWRGLCKTSIK
FT                 EIIDAARTVKQLKLKPHQKINLIRTYLLPRYIHKLVANPPPLGTLDLIDKE
FT                 LKTIIKEILHLHPSTTDGLIYTDKSHGGLGIQRVANIVKLAKLKHSILMTR
FT                 SEDNAVKIALNGQEGMVKRYATSIGLQWPCGIEEIEETRKKLKRADTNKWK
FT                 TLISQGQGIKEFFGDKTGNAWLYNPEMLRPSRYLDALKLRTNTYGTKAALH
FT                 RAKRDIDINCRRCGVQVETLGHILGLCTHTKNKRIKRHDEICDLIAKNVSK
FT                 EYVIFREPEVEVNGDRRKPDMVIKDHDKVYVVDVTVRYENNDSLNKAYKEK
FT                 ENKYKETAEIMRRDLKAKESRVLPVVIGSRGAVPRATIENLKVLGLQTKHA
FT                 LTASLIALRSSIEMANEFLDYDHTT"
XX
SQ   Sequence 5002 BP; 1677 A; 1166 C; 1178 G; 981 T; 0 other;
     tggtaatcaa atgcctcgct attttagtag cggtagcgct ccgcccgcgc aggaaccatt        60
     gacgccgccg tagtgtgggt gattttatat ccaaccaatc acgtcaacta cgatcatttg       120
     taatcaccga cggtacttgg taggggtacc acatgggcat tcttgctcat tccacaacgc       180
     cgcctccatc atggcaacaa tttaaaatat atataaattc ttaaggtttg accgtattca       240
     tatatatata tatatattta atattacaac cataaatctt atatcgagcc ttctatttgg       300
     tctcaaaagc aatacgttgt cagatcttgt agaacatcag gagtgagcgg tgcgctgtgg       360
     tatccgtgct ttgtgccgcg gcgacaaacc aatacgctgc tgcctgtcgc aaagcaatac       420
     gctgctgatt ctcggatgcg ggtgtcgacg gtcacgcaaa gcgatacgct ggtggggttt       480
     caaaacaata cggcgctggt gctaaaaagc attatgccgc taacggctgg attgtcgatc       540
     gccgctgcgg gggctagtgg cgcacccaga gaggtgcgac gcgcaagcat tggttctgtg       600
     cgaagcggag ttcttgagag taatggttgc tgggggcaca aagcgcaaca tatagcctct       660
     tatgcctcaa gtcgtagttc gtacctccac gtggtcccgc tggaatgcct atcgactcct       720
     ccccggagga tcatagagtt cgaaaccggc tacggcgagg caagggcggt gaggtgcaca       780
     ccgatgggga gcagcgaccc cacctaccct tagctaagag agcaggcgat ccgccaactg       840
     tcagcacgaa ataaactaat catatgtata cgagggagaa tttacaacgg gtaccttgtg       900
     cccgaaccgc ctgtaggtat cacctacagg tgttaaaatg aatctgatag ctggcggatc       960
     gtcgaccctc tttgatggct ctgcgccaac gactggaaag aataggaacg gaagtctaat      1020
     ggaaggaaag tgtcgggagc actataaatt cccaaagaag aaaagaaaag aaaaaaaata      1080
     aaaaacccaa attaaatgtc gagtaacgaa gaaggagcct cggacacggg ggcccccggc      1140
     cctggggtcc ccgtggcgga cgtgtccgct gcggatggaa gggccactta tgacgaccat      1200
     ggcatgtcca cggactacga gaaacaaacc atcgaactgc ccctgaacgg gcagatacaa      1260
     tgcttatggt gccacattga aggaaggaac caaagattcc tccaggaaag ccaatactta      1320
     aaacacaaag acacgcaaca ccctaaaggc gaaataatat ggaggtgcgc tgcatgccag      1380
     aaagaattcg agaaactcca tggctgcagg tgtcacttac ccaagtgtaa gggacgcaaa      1440
     gaagccaagg gtgttgccaa atttaaatgc gactcctgcg aggaatcgtt cctaacgcaa      1500
     agaggattgt ctatgcacga gctacataga catccagcga ttaggaactt gaaaagaaca      1560
     caaggcacca gtcggggaaa taccagacca atcaacagag cctcggtctg gtccaaagag      1620
     gaaacggacc tcttgataaa acttaacgag cgctacaaac acttaaaaca gccgaacgta      1680
     gcgctcaaag aatatttccc cgacaagaca ctaaaacaaa tcagcgacaa aagaaggctc      1740
     ttgcccgttc aggaacccga agacgtggcc acaactgatg aaacgggacc tcctccttcc      1800
     gactcatcgg aagagagcat atacgaatcg gccacggagg acgaaggagg aggagatatg      1860
     caacaaacgg ctccaaacga tagctggaag gagccgttta tacaaagtat aagaacaaac      1920
     cacctcgaag aggaagactc ccttcgaaag gtggaagaag ccatcgaaag aatggctatg      1980
     aatgaagggg taactgaaca agaggtgggc acccttcttg aacaatttgt cgactcccta      2040
     actcaatccc caacaacgga aagaaagggg agccgacgta agagtcaaaa gactacaaaa      2100
     agaaagacca cccataacaa tagaaaaaag ttcttatatg ccaaacacca ggagctctat      2160
     aaaaagagcc cacgaaggct tctggagttg gcgttatcgg gtgagtctag cagtggcaga      2220
     gaagtggtta atctccctga ggccgactca gtgggtccac tatataaaag tctatggggc      2280
     caaataggcc cggaaaaaac tcacagaaac caacctatgt gcaacaatat cgatatgagc      2340
     gaaatttgga ctccaatcgc cctggagagc cttgtcgaaa aattcaaaaa gataaagtcc      2400
     gacaccgcag ccggcgcgga ccagataaag aaattccacc tgagaaagaa aggggcacta      2460
     cacgtattcg ccaaactgtg taacctcctc atgctgcacc gaatataccc agcacagtgg      2520
     aaaaccaacc gaaccacgct tattcccaaa ccggggaaga gcgcggaaga ggttgagaac      2580
     tggagaccaa tcaccatcgg gtctctgctg ggaagaatat attcggctat gatcgaccgt      2640
     aaattacggt cgaaaataaa gcagcacata agacagaagg ggtttacaca ggaggatggc      2700
     tgtaaaaata atatagccat tctcagtagt gccttaacca aaatgaaaga ggactcaggt      2760
     ggaatcataa ccataataga catttccaaa gccttcgaca cggttcccca cggcgaaata      2820
     agccaaagtc tgatgaacaa aggagtccca tcgcccatat gcgaatacat tcaaaaaatg      2880
     tacataggtt gtaaaactat tatatattgc agagacaaga aaacactgcc agtggacata      2940
     ctgagaggag tcaaacaggg agacccgcta tcgccactgc ttttcaactt gataatagat      3000
     cccataatag ggacactgga cgagacgacg gagggcatta aattagaaaa cgagaacatt      3060
     tcagttctcg ccttcgccga cgaccttgtc cttttggcga aagacaaaga aacagccgat      3120
     aagcaaaatc ggctcatcaa tgaatatctg gacgacctga aaatgaaagt atccgccgaa      3180
     aaatgcacaa ccttcgaaat caaacggcag aacaaaacgt ggttcctagg agacccacag      3240
     ttgacgttgg gtcagcaacg tatcccgtat gccgacccag aagcagcaat caaataccta      3300
     ggaaccaact tcaatccatg gagagggttg tgcaaaacct cgataaaaga aatcatcgat      3360
     gcggctagaa ctgtcaaaca gctgaaactt aagccgcatc aaaaaatcaa ccttataaga      3420
     acctacctct tgccaagata catacataaa ttggtggcaa atcctccccc tctggggact      3480
     ctagacctaa tcgataaaga gctcaaaact ataataaagg aaatattgca cctccatccg      3540
     tccaccacgg acggactaat atacactgat aagagccatg gcggtctagg gatccagcgg      3600
     gtggcgaaca tagtcaagct ggccaaacta aaacatagta tactaatgac aaggtcagag      3660
     gataatgccg tcaagatagc acttaacggg caagagggaa tggtgaaaag atacgccacg      3720
     tccataggcc tacaatggcc atgtggaata gaagaaatcg aggaaacgcg taaaaaactc      3780
     aagagggcgg atacaaacaa atggaaaact ttaatttcgc aaggacaagg cataaaagaa      3840
     tttttcgggg ataaaaccgg gaatgcctgg ttatacaacc ccgaaatgct gagaccgtct      3900
     cgatacctgg acgcactaaa actgagaaca aatacatatg gcacaaaagc agcactccac      3960
     agagcgaaaa gagacataga cataaactgt cggagatgcg gcgtccaggt ggaaacccta      4020
     ggacatatat tgggactatg cacccataca aagaacaaaa gaataaaaag acacgacgaa      4080
     atctgcgatc ttatcgcaaa gaatgtctct aaagaatacg tgatatttag ggaaccagaa      4140
     gtagaggtaa acggtgacag acgtaaacca gatatggtca taaaagacca tgacaaggta      4200
     tacgtcgtgg acgtcaccgt aagatacgaa aacaatgatt ccctaaacaa ggcctacaaa      4260
     gaaaaagaaa acaaatacaa agagacagcg gaaattatga gaagagactt gaaagcaaaa      4320
     gagagcagag ttctgccagt ggttatcggg agcagagggg cagtgccccg agccactata      4380
     gaaaatctaa aagtcctagg gcttcaaaca aaacatgccc tgacggcttc gctcatagcc      4440
     ctccgatcgt cgatcgaaat ggcaaatgaa ttcctggact acgatcacac tacgtgatcg      4500
     ttaaaagtaa aaatctattt atttattttt attcctatat tataacacat tatttattta      4560
     tttacttatt gttttaaaga tgacgaagcc gcaaggccaa tccaaattta acaaaagaac      4620
     gagactactg gtcgacatta aaaagacgaa gcagctgcca gctgataaac aacagagccc      4680
     gtctcggcct ttacaccgag cggtgcaagt cctgacgtac tattgtacgt ctagggcgcg      4740
     gggcagattc taccgtgtag aatctggggc gacgcctccg cgaggcactc cctggacaac      4800
     gtacgctaaa gcgtacggct aagtgcgcct cccgaaaggg tccccgttcc taatttttcc      4860
     gagcccgcgg gcagatctcg tggcagtgac gctagaaagt taagtccgcg gacatataaa      4920
     attacagcct taaataatga accccacgaa ggaggtatcc tcgaaattcc gccacgatcc      4980
     ttctgatcgt aggcgcaaaa ca                                               5002
//
ID   R2A_NVi     repbase;    DNA;    INV; 6975 BP.
XX
AC   .
XX
DT   22-DEC-1995 (Rel. 1.11, Created)
DT   08-NOV-2010 (Rel. 2.02, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Nasonia
DE   vitripennis.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Retrotransposable element R2; NVR2; R2_NV;
KW   R2A_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-6975
RA   Burke D.W., Eickbush G.D., Xiong Y., Jakubczak L.J.
RA   and Eickbush H.T.;
RT   "Sequence relationship of retrotransposable elements R1 and R2
RT   within and between divergent insect species.";
RL   Mol. Biol. Evol 10, 163-185 (1993).
XX
RN   [2]
RP   1-6975
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. A partial sequence of this family was previously
CC   registered as R2_NV.
XX
FH   Key           Location/Qualifiers
FT   CDS           701..2164
FT                 /product="R2A_NVi_1p"
FT                 /translation="DTQNPTCTDASKLRSYYSQNASKEQQLISEGHDEDLG
FT                 MTEGLFSPPVDIGKAKDVEDEIRGHLYFLETVDLSRLSKESQAGIAKAVTG
FT                 LTKGMDLVMYHVRTMTKEAGLAGAFSKVLQETMRKVILKEREQHLQRVQNA
FT                 VKSVGEKVQKAIAEISEIGTGMSSNVDINALAESTANKIARGWKESEKQQM
FT                 SKLEELKQSIDEAKTTGNNITYAQAAGNQWTTVGQKRKRILSSAGLEVTVT
FT                 ETEDVLIKPEQERGEEYPNAAVIIKKLKATIDPDEQNITVERMIPRTNMVV
FT                 AVVKKGDGPKLIEGITRKGIGLLAETRKKLQPRILVQDIPEEMEEEELMAR
FT                 LKKNVSLEAQRDEVRLIRMIKTRRGNKLAVIELPARAHEDLTHLQKVKIGW
FT                 SICRIATDIRPNQCYKCQAFGHHAARCASDAVCAKCAQNHETKTCRNKGAR
FT                 KCANCSKACRADCNHPAFDATKCPIFRAELEKSARNIDYSYSE"
FT   CDS           2231..5305
FT                 /product="R2A_NVi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NQIKKSNTSTGARIPKAMTNPADNFAGGQWKPPGRRS
FT                 ARTSATGMFVCEHCLRAFTTNTGRGLHIKRAHEEQANEAITTERSRARWTN
FT                 EEMEAVQAEIDCEGRTAINQEILRIIPYQRTIDAIKCLRKQQKYKTIRERV
FT                 ANRRAENRARETELTRLETADEDPASQEQDNPNMSLKNWLKEVIESDDDRL
FT                 CADLRTAIEMALAGQSPLDVCTVGCYQYTMTNLPLVPVRLGGPIYWCNAQS
FT                 RSNPGETQRRQTIKESNNSWKKNMSKAAHIVLDGDTDACPAGLEGTEASGA
FT                 IMRAGCPTTRHLRSRMQGEIKNLWRPISNDEIKEVEACKRTAAGPDGMTTT
FT                 AWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACFRPLSI
FT                 ASVALRHFHRILANRIGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARM
FT                 KIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTR
FT                 LEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENTGFLMGAEK
FT                 IGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPS
FT                 GKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYNSYGPIQVKINIAG
FT                 DLQRVTAAPLKPQQRMAILGMFLIPRFIHKLVLGRTSNADVRKGDKIIRKT
FT                 VRGWLRLPHDTPIGYFHAPIKEGGLGIPAFESRIPELLKSRIEALGASNMQ
FT                 TARSLLGGDWVAERKKWINTQKIKNSEWAQKLHLTTDGKDLRDTRKAEASY
FT                 SWIRDIHVAIPASVWIKYHHTRINALPTLMRMSRGRRTNGNALCRAGCGLP
FT                 ETLYHVVQQCPRTHGGRVLRHDKIAEQVAIFMQEKGWLVLREAHIRTSVGL
FT                 RKPDIIARKGQDCKIIDCQIVTTGNDIRIQHERKIQYYASNWELRRSAATM
FT                 IGHQGQVSVEAITISWKGVWEPRSYCLLRDCGIPKVKIKGLTTRVLLGAYL
FT                 NFNTFSKATYRTERRRTAN"
XX
SQ   Sequence 6975 BP; 2321 A; 1496 C; 1777 G; 1381 T; 0 other;
     agagcggttc gatcgcacaa tggctctgtg taaaagtgtc taattagtgg tttaggagtg        60
     ccggagtgga ccagaaagtg aataacgagt gctgttggtg attctgcatg tgtggtaata       120
     ataattgttg caatacctgc taagtggacg cgaaaagaac agaaaatgtt aaactaacct       180
     caaaatctac cacgcgccac atggccgtac attacttgaa agacgctaaa caaaccgtat       240
     gtgaacctat ggaacaatat atatcaaaat gttcggaaaa aagtcgcgcg aggttgtgaa       300
     ctgttagcag aatgttattc taacaatatc tcgagcaatc atcggaaaaa gtgaacacgt       360
     ggactaacat aacctcaaaa agtgcgtggc catctgccgg gggatatggt actgccgtgt       420
     gggctcggtt ggtaagacag tatactatct tatcgactgc aggtcaaact gtgtgtactc       480
     ggtaagttat ctttgtggcc ttccgacagt gggtactgca gttgcgtagg caggttgtcg       540
     caacataacc tccaccaaga cacggtgctt ctggcgatac gatggggaca ccaccaaaaa       600
     ggtcaggctc ggaagattcc agaatcaatc ggaagtcaac atcaaaggat acgatgaaga       660
     aaccaccaaa tgtccagaat agccaagata agaagcatga gacacccaga acccaacatg       720
     tactgacgcc agtaaactca ggtcctacta ttcccagaac gccagcaagg agcagcagct       780
     tatttctgag ggacacgatg aggacctcgg catgactgag gggctgttct cacccccagt       840
     tgacatcgga aaggcgaagg acgtggaaga tgagattcga ggtcaccttt acttcctgga       900
     aacggttgat ctctcgaggc tgagcaagga atcgcaagcg ggcatagcaa aggcagtgac       960
     tggactaacc aagggtatgg acttggtaat gtaccatgtc aggacgatga cgaaagaggc      1020
     cggactggca ggtgcatttt caaaggtact gcaagagacc atgagaaaag ttattctgaa      1080
     agagagagag caacatctgc aaagagtaca gaatgctgtc aaatcggtag gagagaaagt      1140
     gcagaaagct attgctgaaa taagcgaaat aggaacaggg atgtcatcaa acgtggacat      1200
     aaatgcgcta gctgaatcca cagcaaacaa gatagccaga ggatggaagg agagcgagaa      1260
     acagcagatg tcaaagctgg aggaactgaa gcagtccatc gatgaagcaa agaccaccgg      1320
     aaacaacatc acgtatgctc aagctgctgg aaaccaatgg accacggtag gacagaaaag      1380
     aaagagaata ctttctagcg cgggcctaga ggttacggtg accgagaccg aagatgtgct      1440
     tataaaaccg gaacaggaaa gaggggaaga gtaccccaat gcagccgtga taattaagaa      1500
     gctcaaagca accatcgacc cagatgaaca gaacatcacg gtggaaagga tgatcccgag      1560
     aactaatatg gttgtagcag tcgtgaagaa aggagatgga ccgaaactga ttgagggtat      1620
     aacccggaaa ggtattggtc ttctggctga aacaaggaag aagctacaac caagaatcct      1680
     ggttcaagac atcccagaag aaatggaaga agaagaacta atggctcggt tgaaaaagaa      1740
     cgtatcacta gaagcgcaaa gagatgaggt cagactaatc agaatgatca aaaccagaag      1800
     aggtaacaag cttgcagtaa ttgaactgcc agccagagcg catgaagacc taacgcatct      1860
     ccaaaaggtg aaaattggat ggtctatctg caggatagcg acagacataa ggccaaacca      1920
     atgctataaa tgccaggcat tcgggcacca tgcagccagg tgtgcctcgg acgcggtgtg      1980
     tgcaaaatgc gcccagaatc atgagaccaa aacatgcaga aataaaggcg ctaggaaatg      2040
     tgccaactgc agcaaggcct gcagagctga ctgcaaccac ccggcattcg atgccactaa      2100
     gtgtccaatc tttagggcag agctagagaa gagtgcgagg aacattgact actcctattc      2160
     ggaatagtca ggttacgtat acaggggtga ctccctgccg caaaggcgcc gcaaggaaca      2220
     cctgcgataa aaccaaatta aaaagtcaaa cacatccact ggcgcacgca tacctaaagc      2280
     tatgacaaac cctgcggaca atttcgcagg gggccagtgg aaaccacccg ggcgaagatc      2340
     tgcccggact agcgcgacag gcatgtttgt ctgcgaacac tgcctaagag cgttcaccac      2400
     caacacggga agaggactac atataaagag agcccacgaa gaacaagcaa acgaagcaat      2460
     aacaacagaa agaagcaggg caaggtggac caacgaagaa atggaagcgg tgcaagctga      2520
     aattgactgc gaggggagaa cggctatcaa ccaggagatc ctaaggataa taccctacca      2580
     gaggaccatc gatgccataa aatgcctaag gaaacaacag aaatacaaga ccattaggga      2640
     aagagtcgca aacagaagag cggaaaacag agccagggag actgagctga caagactgga      2700
     aacagcagat gaagacccag caagccagga gcaggacaat ccaaatatgt ccctgaagaa      2760
     ttggctgaaa gaagtcattg agagcgacga tgacaggttg tgcgcggacc tgcggacagc      2820
     catagaaatg gcactagcag gtcagtcacc acttgatgtc tgcaccgttg gctgctatca      2880
     atacacaatg acgaatctgc cactggtacc agtgcgactg ggaggaccca tctactggtg      2940
     caacgcccaa agccgcagca atccaggaga aacgcaaaga aggcagacta taaaagaatc      3000
     caacaactct tggaagaaga acatgagcaa agcagcccac atagtacttg acggagacac      3060
     tgacgcgtgt ccagctggtc ttgaaggaac agaagcatct ggtgcgatta tgagggcagg      3120
     ctgtccaaca acacgacact tgcgatcaag gatgcaaggt gaaattaaga acttatggag      3180
     gccaataagt aatgatgaaa tcaaggaggt tgaagcctgc aagcggactg cggctggtcc      3240
     tgacggaatg acaacgacag catggaacag catagatgag tgcataaaaa gcctttttaa      3300
     catgataatg taccatgggc aatgccccag gagatatctt gactcaagaa ctgtactcat      3360
     cccaaaggag cctggaacaa tggacccagc atgctttagg ccgctgtcca ttgcatcagt      3420
     tgcactgcga cacttccaca gaatactggc aaatagaata ggtgagcatg gactcctcga      3480
     cacaagacaa agagcgttca ttgtggctga cggtgttgcg gaaaacactt cgctactatc      3540
     ggccatgatc aaagaggcca gaatgaagat aaaaggctta tacatcgcta tactcgacgt      3600
     aaagaaagcg tttgactccg tagagcacag gtcaatctta gatgccctga gaagaaagaa      3660
     actaccactt gaaatgagga actacatcat gtgggtgtac agaaactcca aaaccaggct      3720
     ggaagtagta aaaacgaagg gcagatggat tcgcccggcg aggggagtga gacagggtga      3780
     cccgctctcg ccactcctgt tcaactgcgt gatggatgct gtccttcgga ggctgccaga      3840
     gaatacaggc ttcttgatgg gtgcagaaaa gattggtgct ctcgtcttcg cggacgacct      3900
     ggttctcctt gcagagacga gagagggtct gcaggcgtct ctaagtagga ttgaggctgg      3960
     actacaggag caaggcctag aaatgatgcc aaggaaatgc cacactcttg cgctggtgcc      4020
     gtccggaaaa gagaaaaaga taaaggttga aacgcataaa ccgtttactg taggcaacca      4080
     ggaaataacg cagcttggac atgcggacca gtggaagtat ctaggtgtgg tgtacaactc      4140
     ctacggacca attcaggtta agatcaacat cgcgggtgac cttcagagag taactgctgc      4200
     cccactaaag ccacagcaga gaatggctat cctgggtatg ttcctgatac ccagatttat      4260
     acacaaactc gtgcttggca ggacatcaaa tgcggacgtg cgtaaaggag acaagatcat      4320
     taggaagacc gtcagagggt ggctcagact gccacatgat actccgatcg ggtacttcca      4380
     cgcgccgatt aaggaaggtg gtttgggcat tccagcgttt gagtccagga ttccagagct      4440
     tctaaaatca agaatagaag cacttggagc atccaacatg caaactgcaa gaagccttct      4500
     tgggggcgac tgggtggccg aaaggaagaa gtggatcaac acccagaaaa tcaagaactc      4560
     ggaatgggct cagaaactac acctaacaac ggatggcaaa gacctacggg acaccaggaa      4620
     agcagaggcg tcatacagtt ggataaggga catacatgtt gctataccag ctagcgtctg      4680
     gataaagtac caccacacca gaatcaacgc acttcccaca ctgatgagaa tgagcagagg      4740
     cagacgaaca aatggaaatg ctctgtgcag agccggatgt ggacttccgg agaccctcta      4800
     ccacgttgtt caacagtgcc cccgcaccca tggaggaaga gtattacgtc atgacaaaat      4860
     agctgagcaa gtagccatct tcatgcaaga gaaaggttgg ctggtgctaa gagaggcaca      4920
     cattagaact tcagtgggac taagaaagcc agacattatt gcacgaaaag gacaggattg      4980
     taaaatcatc gactgccaaa tcgttacaac ggggaatgat atacggatac aacatgagag      5040
     gaaaattcag tattacgcca gcaactggga gctgcgaaga tcagcagcaa ccatgatcgg      5100
     gcatcaaggg caagtaagtg tggaggctat aacaatatcc tggaagggcg tgtgggagcc      5160
     acgatcatac tgtttgctca gggattgcgg cataccaaaa gtcaagatca aagggctaac      5220
     gactagagtt cttcttgggg cgtatctaaa ttttaacacc tttagcaagg cgacatatag      5280
     aactgaaagg agacgaacag caaactaaga gaagtaccac accagctata aacgcctaaa      5340
     atatgcatta aagaaaaatt ttgcttagac atccggaaag gccagcaccc ttgggagcat      5400
     caccaggaac tggagagtgg ccacacatag taagaacgaa gaaatagcgc tcaaaaaccg      5460
     caaaaactga gcaatcttag caaattataa aagacggaaa aacagcctaa ataacaaaaa      5520
     taacggaaaa tcttgtttag tcatcgtaga aagtactcca ccagacgaac acatacaaac      5580
     aagaaagaca tcggaaaaat aattatatca aaagttatga ctaaaagagt aaacaagtag      5640
     tgcagccctg caaaggaaaa ctaagtggtg aagccctaca tgtagtcagg cagaaacccg      5700
     caagtgattc tgccaactgt ggggcatata agtaaagcag tgtaagaata gggacattga      5760
     aactagagga catctacagg caagaaagcg atagaaatga caactagacg taccagaagc      5820
     cggagtgcag ccacgaaagt gaaaatggca acatcaggcc cagcaaagga acctgaagaa      5880
     gggaaacctg acctggttaa ggcagcatta tggctaaatg gacggctttt tggcaacaag      5940
     taaaggggtt tacctaccgc tggggaccaa ggatgacctc catgtatgca ttcacgaaca      6000
     ccagaaccag ggagattgtt gtaagctggg acctgctaag ggagctgccg atggccgtct      6060
     tcgaaggggt gctggcgcac gagatgctgc acgctttgat gttcctagaa aactatgaca      6120
     ttttctggaa acgtaccagt aaggagctga tcagcgtgtg gaaaaagaga agtcaaagga      6180
     agccacccag agctacgcag acttcgtcaa agaacatggt gaggtgctag acgaccatgg      6240
     cccggagttc aagcgtcgat gcatcccctt gtctaaggcc ttgggagtaa atgtggcaga      6300
     tgtctctgac aaggacaaaa ccgagaagaa cttccatcta aggcggtttg aatgggaatg      6360
     taggtcatgc catgagatgg catacctctc cactaggcgc aagcctggct cccttaccaa      6420
     gcacaaggat ggatgcaaga aggcaaattg gaaactcgtg gaggagtatg agaggccgcc      6480
     aaaagtcccg aaccacgaat cctacgcaag aaacgctcgg aagtacgacc aatagtagag      6540
     gagtttggac aacagggaca atgctgcagt acatgaacca cctacaccca ggcatcatga      6600
     agactcaaat gcaattattt aaaatcatct ttttgttttt tttgcttatt ttattttagc      6660
     cttatcaagt gaacgctatg tcgcgctagt attaattctt attattattt cttttcactg      6720
     tcctaaactt ctccttcttt tctttttctt ttgcattctc tatatcttta gccttgttaa      6780
     atagaaacta taaatttttt gttttctttt cttttctatc aagaaaaggg agagccttca      6840
     atatattttg ttattctagt tttattttgt aaatactata attacaatat gtaaacaatg      6900
     cacgaacaaa aaagtgcatt tcttttgtta gctgtacccc atgcaggagt gctatgggca      6960
     ataaatcata ttatc                                                       6975
//
ID   R2A_TM      repbase;    DNA;    INV; 1410 BP.
XX
AC   AF015817;
XX
DT   26-AUG-1999 (Rel. 4.07, Created)
DT   26-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2A_TM; R2_TM.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1410
RA   Burke D.W., Malik S.H. and Eickbush H.T.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons.";
RL   Unpublished.
XX
RN   [2]
RP   1-1410
RA   Burke D.W. and Eickbush H.T.;
RT   "R2A_TM.";
RL   Direct Submission to Genbank (24-JUL-1997)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015817; Positions       1    1410.
XX
SQ   Sequence 1410 BP; 441 A; 334 C; 357 G; 278 T; 0 other;
     gcctacgcgg acgatatcat cctgcttgca gataacgtcg agactgcgca aagacttctc        60
     aacgcctcca caagattctt tgaagaccgg gggctcgaca tcaaccccgc gaagtgcgag       120
     tctctagtga tgcgtactct cccgtcaaag aagaaggtct tcactgtgac aactccgcaa       180
     ttctacgtta aggctgaacc gatcaagcca atagaagttg gaaaggcttt taaatatctg       240
     gggcagcagt tcacatgcac gggttcaacc aactgctcaa ccaaagatct aagcgaacag       300
     ctacttagaa taaagaaggc cccactgaag ccccaacaaa aaataaacat catcaaaacg       360
     tatctgatgc cggcctacat ccactcaatg cagaacccag ccgtcaacaa aaagatatta       420
     cgagaagtgg ataggaaaat cagaatggtc gttaagggga tactacatct tccactccat       480
     ttgtccaaca ccgcaatata tgccccggcg aaaatgggag gtctaggaat gttttccttt       540
     tcaagaaaga tccccatcat tgtactaaaa cggttaaaca acttaagccg tacttgctcg       600
     aacttccacc ttgtgttgcg agaggccgcc ccatgggtca atagattaaa gaaaatggta       660
     aggccagacg taacgacaaa agagcaagtg gacagagcaa atggggtgga acatgagggt       720
     tcgtactacg gcggcggtac gatgcaatgt cggaacgact ctgcttcaaa tacttggatc       780
     aacacccccc caaggtattg gaccggatcg gattacgtga aagcggttca gctaagactg       840
     aattgcctgg ccaccagagg ccttccctat aacccgccgg aacaaagaag atgcagagcg       900
     ggatgcgaca gggttgaaag cctgtcgcac gtcttacaga aatgccctct aggacacaca       960
     atgaggatga gaaggcacaa ttacatcgtt aaaaggctta agaccatggc tctgaagaag      1020
     ggatggacgg tggaggagga gccgatatgc gatgcgcgcg gtgtactgag gaagccagac      1080
     cttatcctca gcaatgaaga gacggcccta gtagtggacg ccatggtgtc ctgggagtgc      1140
     cccagagacc ttgcagagac attcgattgc aagaggctgg tatatgacca gcctgagttt      1200
     accagcgtac tcgaatctaa ataccatcca aggaatatca gagtactacc cttcatcatc      1260
     ggcgcaagag gtatgtggtg cagacagagc accgaaacac tagaagcgat gaaggtgaac      1320
     aatgtgagca atcgaaggga actggtccat acaacactga gaggaagctg gagtatacat      1380
     cgagaattta cgaggagaag ctgggaatag                                       1410
//
ID   R2B_DM      repbase;    DNA;    INV; 3446 BP.
XX
AC   AF015685;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Drosophila mercatorum R2 retrotransposon reverse transcriptase
DE   domain protein gene, complete cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2B_DM.
XX
NM   R2B_DM.
XX
OS   Drosophila mercatorum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mercatorum subgroup.
XX
RN   [1]
RP   1-3446
RA   Malik S.H., Burke D.W. and Eickbush H.T.;
RT   "Complete R2 element from Drosophila mercatorum.";
RL   Unpublished.
XX
RN   [2]
RP   1-3446
RA   Malik S.H., Burke D.W. and Eickbush H.T.;
RT   "R2B_DM.";
RL   Direct Submission to Genbank (23-JUL-1997)Biology, University of
RL   Rochester, Hutchison Hall, Rochester, NY 14627, USA.
XX
DR   GenBank; AF015685; Positions      83    3528.
XX
SQ   Sequence 3446 BP; 941 A; 807 C; 874 G; 824 T; 0 other;
     agggagtaaa tgggtttctg gtttacttgt aaatcattaa tcaagtcgac tcgtagacac        60
     actgtgtccc acaaagttgt catgtggcct cctcgtggtg tctcccggaa gttatttggc       120
     taggcgtttc ctggtcaaat aaactaattc gagcggcgaa ctggtcccgt tggttacctg       180
     ccctcaggga tcgaaaaact gatggtacaa atgttcaata atgagcctcg gatagctgaa       240
     aataactcag ttgaatatac tcctacggtt actcgcctag gagaccatca ggtacggaac       300
     gcagatgcta atttgcagac tatgtttccg tgcagagaat gtgaacgatc tttcagaacg       360
     aagatcggct tgggtgttca catgagacat cgacacaaag acgaactgga tacagcgcgt       420
     cggcgtgtcg atgtcaaagc acggtggaat gaggaagaac tgtctatgat ggcaaggaag       480
     gaacttgagc tcacagcaaa tggtgagagg ttcataaata aaaaactagc ggagatcttt       540
     acaaaccgca gcgtcgatgc tatcaaaaag tgtcgacaga gagataatta caaggcgaaa       600
     atcgagcagc tacaggggca agcagctctt atctcagaag caaatgaacc tcctaccaca       660
     cagcgccgcc ctagtttaag tgagctcgag gtaactccct catcgtcaca ttcagttcca       720
     atcgctccac caccgataca ttcggatgat atcctcttgc aggagcttca gggcatgtcg       780
     cctgtcgcag taagaagatc ttggagagtc gaggtcttgc aatctatcat tgatagagcg       840
     catatctcgg gcaaagaagc aactctccag tgtttgtcta actatctctt ggaaatattt       900
     ccgaatcgaa acgaccgccc cagttccgcg acggtccccg cccggcgccc tcgcaataga       960
     agaattagta gaaggcagca gtacgccaga tgcataaaat ccttgcttga tggaaccgac      1020
     gagtcggcat tgccaaacca gagtattatg gagccttatt ggagacaagt catgacacag      1080
     ccgagcccca gcctttgcag caacaccgtt ccccgtaaag ggaacatgca agagggggta      1140
     tggtcaccga ttacgtctag ggacctacaa gtgcataaag tgccattgac ttcgtcgcca      1200
     gggcccgatg gaattacttc acaaactgcc agaagtattc ctatcggaat aatgcttcgc      1260
     attgttaacc taatactttg gtgcggagat ttgcccgtac ccttccgaat ggctcgaacc      1320
     attttcattc cgaaaacggt aagagcaaac agaccgcaag actttcgtcc gatatcggtt      1380
     ccttcgatcg tggtgagaca gcttaatgcc atcttggcat cccgactaac ggccgccgtt      1440
     agttgggatc cgagacagcg aggctttcta cccacggacg gatgcgctga taacgcgacg      1500
     atagtcgact tagtcctgag ggatcaccat aagcgttatg cgtcatgcta cattgccacg      1560
     ctagatgtta gcaaggcatt tgactctgta gctcatgacg cggtattcaa caccgtaacc      1620
     gcttatggtg ccccaaagag cttcgtcgac tacgtacgta gatggtacag tggaggtggc      1680
     acctacttca atggtggaga ttggaggtca gaggaattcg tccctgctag aggtgttaag      1740
     cagggtgacc ctctgtcccc cgtactgttc aacttgatca tcgatcggtt gctcaggtct      1800
     cttcccaaag acatcggtgt ccatgtcgga aatgctaaag ttaatgcttg tgcttttgca      1860
     gatgatttga tgctgtttgc ttccactcca aaggggcttc aggaactctt gaataccaca      1920
     gtaaagtttc tatcttctgt tgggctaacc cttaacgctg ataaatgttt cacgatcagt      1980
     attaaggggc aaccaaagca aaaggttacg gtggtcgaac aacgtacctt ttgtataggt      2040
     cgcgcacgtg tccagctgaa gcgttcggag gagtggaaat atctcggcat tcatttcact      2100
     gcagatggga gggctcgtta caatccttcg gaggacattg gtccaaagtt ggagagatta      2160
     atgcagtccc cccttaaacc acaacagaag ttattcgccc tcagaactgt cctggtgcct      2220
     caactctatc acaagctcac gcttgggagt gttgctctag gcgttctgag aaagtgtgac      2280
     aagctggtac gatcattcgc taggaagctg ctgggtcttc cgttggatgt gtcagttgcg      2340
     ttctaccatg cccctcacag ttgtgggggt ctcggtatac cctcggtaag atggatagct      2400
     ccgatgttgc gcactaaaag attggcagga attaactggc cccatctcga acaatccgag      2460
     gtggccagtg cctttcttag tgaggagctc cgacgggccc gggatagagc gaaggctgga      2520
     gttaacgagc tgctatcaca accaaagatt gatacgtact gggcggatag attgtacacg      2580
     tctgttgatg ggaatggtct ccgtgaagca aggcgctatg ccccacagca cggatgggta      2640
     agtcagccca cgcgtctgat gagcggtaaa gcttatcgga cagggatcca attacgcatt      2700
     aacgccctcc ccacgaggtc tcggaccacg cggggaaggc atgaaatgaa tagacaatgt      2760
     cgtgcaggat gtgatgctcc gagtcataat cacgtcctgc aaagatgtca tagaacacat      2820
     gggagtcgag tgtcacggca taatggagtg gtttcctatc tcaagaaggg gcttgagaca      2880
     aggggctaca ccgtctattc agagcagagc cttcacggcc aaaatcgggt atataaaccc      2940
     gatatagtag cattccgaca tgacagcaca atagtcgttg acgcgcaggt agtgacagac      3000
     ggactggatc ttgacagagc tcatcagagc aaagtcgaga tctataacag acaggactta      3060
     cttacgacat tgcggtctgt atatcgggca cgtgagaaca tcgaggttgt ctccgctacg      3120
     ctaaactgga ggggtatttg gagctttcaa tccataacaa ggttgaggac tctgggtatc      3180
     ctaacagctg gtgacagcaa tgttatcagt tccagggtag tgtccggccg agtctacagc      3240
     tttaagacct tcatgttcca tgcagggttt catagaggaa tggcttagca gctctgaaag      3300
     cgtatcctac aaacgctgct aacttgcaca acatcttaaa aagttataaa gaaagcacac      3360
     gggtgtctta gcttatcaga tatctctggt atagcgagtc atatagcgca acaaaaaaaa      3420
     aaaaaaaaaa aaaaaaatag ccaaat                                           3446
//
ID   R2B_NVi     repbase;    DNA;    INV; 5188 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   08-NOV-2010 (Rel. 15.12, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Nasonia
DE   vitripennis.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; R2a_NV; R2B_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RA   Burke D.W., Malik S.H., Jones P.J. and Eickbush H.T.;
RT   "The domain structure and retrotransposition mechanism of R2
RT   elements are conserved throughout arthropods.";
RL   Mol. Biol. Evol 16(4), 502-511 (1999).
XX
RN   [2]
RP   1-5188
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes. A partial sequence of this family was previously
CC   registered as R2a_NV.
XX
FH   Key           Location/Qualifiers
FT   CDS           656..4492
FT                 /product="R2B_NVi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="TFAPTHPMVRSGPCRKTKRPGSDYRESLIMDSGNNVA
FT                 SEPRGAVDVTSAAPIGAELNAEPCEGRNQRREAALSAQTRRRNXARRARNA
FT                 QQADEPGDDEEIETHGPLTIRTXEPMEIVAIAKNPQACPKCLQGGTQLLCM
FT                 GSWELSRHINKEHPSVDVTWVCGACQRRCTTLRSWSCHVLHCKGRQEPKDL
FT                 PFKCEHCSLSFDSQIGLSQHERHVHPEVRNDKRAAEANKPKGKSGRRPSIW
FT                 SDEDLLLIRELESEYHGARNINEKIAEHFPDRTGRQVSDARRRKDYAALRG
FT                 RGGPQGPAEGVEAIEEVDEGEIPEGEELVATDGAALESGPPENGGSAPAEQ
FT                 VNAPALESSSQQDRECSPAVGSDEQIEDSSDDDEFSDALGEISLPEPLSVE
FT                 RTTISPPPRDDWKGPMRWEICNASEEAGSYANWVTGLQELVRNNALSEIGL
FT                 DSLYDQLIQIMRHPSDDNEQDRLQLNARGPPRRGHRKNRRRRRLTAADRKR
FT                 FAFARCQDLWNNNPKKLAELVIANDLSILQRRQAPGRTETQTLYNELWGRV
FT                 GPNIEAPRRTEDPIPVSRIFTPITPQEIMGRIRRIKNDSAAGPDGVTKDDL
FT                 RGRGVSIALSKLFNSILLAGYYPKAWRENRTTLLPKPEKDPADVKNWRPIT
FT                 ISSMVSRVYSGLLDQRVRAVIKQCDRQKGFTEENGCFSNIQLLDDAVSNAK
FT                 KAGGVITILDVSKAFDTVPHAVIQGCLEKKGIPETVAAYISSMYRDCSTAI
FT                 RTRSGDVKIGMKRGVKQGDPLSPLIFNLVLEPLLERLQETSGVEIEGMNLS
FT                 CAAFADDIVCFANTAPEAGRQLRMVADYLGRLDMSLSVSKCIAVEYVPHRK
FT                 TWYTKNPGLEVNGNAVPSISPSETFKYLGAKVSPWKGLLEGFESDAFREVI
FT                 SRVQRLPLKPMQKVDLLQMYIFPRYTYGLITSPPAKAVLKTIDRIIRTRIK
FT                 EILHLPESVSSSFLYTPRKQGGLGLLEVEKMVLIAALRNGLRARQSHDPVT
FT                 RAAMNSNAADDRLKSYADALRLHWPLTTKELDTYKYQLRLSYAQKWAEQKW
FT                 QGQGVEEFAQDPVGNSWLQRYDLLPASRYIDAIKLRTNTYPTRALMKIIDG
FT                 RVDSSCRKCQGSSETLGHILGRCRYTKDKRISRHNEIKDLLKARLAKNHQV
FT                 MDEPQITVRGQRFKPDLVVKTNEGRVHVIDVTVRYEHRTYLDEGRTEKIGK
FT                 YRQILSTLRRDLHSNAEEVIPIVIGSRGAIPRETRKALSKLGIGKSDWLTI
FT                 SLIALRSSLEIVNAFMDD"
XX
SQ   Sequence 5188 BP; 1416 A; 1302 C; 1443 G; 1024 T; 3 other;
     gactagacta tgggttcagt cagtcccaaa tagccgatcc tggcgcgtcc ggcagtaatg        60
     ccacgtatga gtcggttacc catctctaaa cgcgtagagg tggggagcta aaggccaggc       120
     ggtttacccg acgtcgaatt tctccaggtc tgtgtcagtc gacggaataa aggtactaca       180
     acatctacta tctatcggga tcggaagacg ccttacagcg ttttccgatt tttgctcttt       240
     gagcattttt cttcaaattg cgataaccga cccgatcacg cggggctttg acaaagcaat       300
     gcgtggtcgg taagatggtt gcaatctttt ccacctcgtt tcttttacgg aacgaaagca       360
     atgcgtgtgg ggaacgttaa aaactccctt catgcatccc aggatttatc ctgcttactg       420
     caaagcaatg cgtgtggagc gactttacca cgagtcgctc caccgcaaag caatgcgtat       480
     cgcgcaaaag caatgcgtgt gggggacttg tcaaagatcc cccgccgcaa agcaatgcgt       540
     gtcggcacca cgtagagcaa agcgtgtagg cagactttgt caaaagtagt tctgccgcaa       600
     agcaatgcgt gtggagatct tcgccggtga aagcaatacg tgtgggcgaa cttagacctt       660
     cgcgcccaca catcccatgg tgaggagcgg cccatgtcga aagactaagc gccccggtag       720
     tgactaccgt gaaagtctaa taatggacag cggaaataac gttgcctcgg agccgagggg       780
     agctgtggat gtgacctcag cagctccaat cggggcggag ttaaacgccg aaccttgcga       840
     aggtcgcaac caaaggaggg aggctgcctt aagtgctcaa acacgccggc gaaatncggc       900
     ccgccgagct cggaatgccc aacaggctga cgagcccggc gatgatgagg aaatagagac       960
     acacgggcct ctaactatcc ggacgncgga gccgatggag attgtcgcaa tagcgaaaaa      1020
     cccacaggcc tgtcccaaat gcctgcaggg aggtacccaa cttctctgca tgggcagctg      1080
     ggaactaagc aggcacatta ataaagaaca tccgtcagtc gacgtgacct gggtgtgcgg      1140
     tgcttgtcaa aggcgctgca caacgctcag gtcgtggagc tgtcatgttc tncactgtaa      1200
     ggggcgacaa gaaccaaagg atctgccgtt caaatgtgag cattgcagct tgtcgtttga      1260
     ctcgcaaatc ggactctctc agcacgagag gcatgtccat ccagaggtgc gaaacgataa      1320
     gcgcgcggca gaggccaata agccaaaggg caagagtggc cgtaggcctt ctatatggtc      1380
     cgacgaagac ttgctgctca tccgggaatt agagagcgaa taccacggag ctcgaaatat      1440
     caatgaaaaa atagctgaac atttcccgga tagaacaggc agacaggtgt cggacgcccg      1500
     gaggcgtaag gattatgccg cgctccgagg gagaggaggc ccgcaaggcc cagcagaagg      1560
     agtcgaggcc atcgaagagg tagacgaagg cgaaatccct gagggggaag agctggtcgc      1620
     caccgatggc gctgcgttgg aaagcggccc cccggagaat ggagggagcg cacccgcaga      1680
     acaagtcaat gcgcccgcgc tggaaagcag ttctcagcaa gatcgagagt gcagcccggc      1740
     agtggggtcc gatgaacaaa tcgaggacag cagtgacgac gacgaattca gcgacgcatt      1800
     aggagaaata tcactcccag aacctctctc ggttgaacgc acaacaatct caccacctcc      1860
     tcgagatgac tggaaaggcc caatgaggtg ggagatttgc aatgcgagcg aagaagccgg      1920
     aagttacgcg aactgggtga ctggactgca ggagctagtc aggaacaatg cgctgagtga      1980
     aataggacta gactccctgt atgaccagct catccagatt atgcggcacc cttccgatga      2040
     caacgaacag gatcgccttc aattgaacgc tagaggcccc ccacgaaggg gccaccgcaa      2100
     gaaccgacgg cgccgtcgtc tcacggccgc tgatcgaaag cggtttgcct ttgccaggtg      2160
     ccaagatctt tggaacaaca acccaaagaa gctagccgag ttagtgattg ccaatgacct      2220
     gtccattctc caaaggcgcc aagcgccagg tagaacggag acacagactc tgtacaacga      2280
     gctgtggggg agggtcggac ctaatatcga agcgccaagg cgcaccgaag acccgatacc      2340
     cgtatcgagg atcttcactc cgatcactcc ccaagagata atgggcagaa tcaggcgaat      2400
     caaaaacgac tcggcagcgg gtcctgacgg ggtaacgaag gacgacctga gaggaagagg      2460
     agtcagcata gccctctcca agctgttcaa ctcgatcctg ctagcgggtt actacccaaa      2520
     ggcatggaga gagaacagaa caacccttct gccgaagcca gaaaaagatc ctgctgacgt      2580
     taagaactgg cggcccatta ccatcagctc aatggttagt cgagtctact caggcttgct      2640
     tgaccagcga gtgagggccg tcattaagca gtgtgatcgg cagaaaggat tcacggagga      2700
     aaatggctgt ttcagcaaca tacagttgtt ggatgacgcc gtatcgaacg caaagaaagc      2760
     gggcggtgtc attactatct tggatgtttc gaaagcattc gacactgtcc cgcatgccgt      2820
     gatccaaggg tgcttggaga aaaaaggaat ccccgaaacc gtggccgcct atatctcgag      2880
     catgtatcgc gactgctcca ctgcaatccg aacgaggagc ggggacgtaa agattggaat      2940
     gaagagagga gtcaagcagg gggatcccct gtcacctctc attttcaatc tggttctcga      3000
     acctctatta gaacgattgc aagagacaag tggagtggaa atcgaaggca tgaatctctc      3060
     gtgcgcggct ttcgcagacg acatagtatg ttttgcgaat acagcccccg aggcgggaag      3120
     gcagctacgg atggtggcgg attatctggg ccgactcgat atgagtcttt cagtgtcaaa      3180
     gtgtatagct gtagagtatg tcccccacag gaagacctgg tacactaaaa acccaggcct      3240
     cgaggtgaac ggtaatgccg ttccgagcat ctcacctagt gagacgttca agtacctcgg      3300
     ggcaaaggtc tctccctgga aggggctgct cgaaggcttc gaatctgacg cgttcaggga      3360
     agtcatatcc cgcgtccaaa gactgccgtt gaagcccatg caaaaggtgg accttctaca      3420
     gatgtatatc tttccgaggt acacctatgg gttgataaca tcgcctccgg cgaaggcagt      3480
     cttaaagact atcgaccgga tcataagaac gagaatcaag gagatcctcc acctgccaga      3540
     atcggtaagt agcagttttc tctacacgcc gaggaagcag ggtggattgg ggctccttga      3600
     agtggagaag atggtgctga tagccgctct tcggaacggc ttgagagccc gtcaatccca      3660
     cgatccggtc acacgcgcgg ccatgaactc gaacgcagcc gacgatcggc taaaatctta      3720
     cgccgatgct ctaagactac actggccact aacaaccaag gagctagata cttataagta      3780
     tcagcttcgc ctgagctatg cccagaaatg ggctgagcaa aaatggcaag gccagggggt      3840
     cgaggagttc gcacaagatc ccgtcggcaa ctcatggctg cagcgctatg atcttctgcc      3900
     cgcgtcaagg tacatcgatg ctatcaagct acgaacaaac acgtacccga cgcgagcact      3960
     aatgaagatc atagatggac gtgttgatag ctcttgccga aagtgccaag gcagtagcga      4020
     gacccttggt catatacttg gcagatgccg gtatactaag gataagcgaa taagccggca      4080
     caatgaaatc aaagacctcc tcaaggctcg tctagccaaa aaccatcagg ttatggacga      4140
     gccgcagata acggtccgag gccagaggtt taaacccgat ctcgtcgtga aaacgaatga      4200
     gggaagggtg cacgtaatcg acgtaactgt ccgctacgag cacagaacct atctggatga      4260
     gggccgtact gagaaaattg gcaaatatcg ccaaattctc agcacgcttc ggcgagatct      4320
     gcactcgaac gccgaggagg tcattccaat tgtaatcggg tcgagaggtg caattccaag      4380
     ggaaacgcgg aaagccctct cgaaactcgg aattggcaag agtgattggc ttacgatctc      4440
     actaatagcg ctgcgtagct cgctagagat cgtcaacgcc ttcatggatg actgacctga      4500
     acaaaacgtg ttgtcttgtc ttgtctaaaa ctatttattc gaaataaggg gaggctaact      4560
     gcctgcaagt tgaacgcgaa agttagacct tcccacctaa agcccaaaag tgatcgggga      4620
     atgaatccgc gggtgacccc agagttgggt aaacccttga aacgttggag aagcggaaga      4680
     gagtcccgcc accgagcatc gagtgctgcg gcgcccgaat gaaaccgatc gcggatggtg      4740
     caagtcgtag gacggggcac gacctaagcc tctgtcacgg cggcgaagcc aggaatcacc      4800
     atgcaaaggt gtgaactggg gcggatacct ccacggggtt tccctgggca tcgcgcgagc      4860
     gatggccaaa gtccgctttc tcagctacaa aacaaaaatg gtatgagact tcgttaacac      4920
     taatttttcc gagcctagca ggctcccttg acaacgctta tgaatctgga aaaggacaca      4980
     aagtggaaaa agcgctgatg gtggacaaaa gtcagttgag acttgatatc agttgttttg      5040
     actaagaatt ttattatcgt tgacttttaa atattttatt attgactgtt aatatactga      5100
     cttgggacca agtcatctct gttacccggt accggttcct gtcatcaaac cggaaagtcc      5160
     gtcccacgta atgtggtaga cgcaggag                                         5188
//
ID   R2B_TM      repbase;    DNA;    INV; 1467 BP.
XX
AC   AF015822;
XX
DT   26-AUG-1999 (Rel. 4.07, Created)
DT   26-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2B_TM; R2_TM.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1467
RA   Burke D.W., Malik S.H. and Eickbush H.T.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons.";
RL   Unpublished.
XX
RN   [2]
RP   1-1467
RA   Burke D.W. and Eickbush H.T.;
RT   "R2B_TM.";
RL   Direct Submission to Genbank (24-JUL-1997)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015822; Positions       1    1467.
XX
SQ   Sequence 1467 BP; 377 A; 337 C; 373 G; 380 T; 0 other;
     gccttcgccg acgatttggt gctccttgct gacagtgcca aggacgccaa taggctgtta        60
     tcggaggcct cgcagttctt tgcggatcgg ggactcgaat tgaacgttgc caagtgctgt       120
     gccttgtcaa caggtgtagt tccgtccaaa aagaagtgtt cagctcgact tagatcttat       180
     tccaggctga acggtgccca catccgtcaa gtggcgattg gcgatgtctt caagtatctg       240
     ggcaatcact tcgctttcga tggcgttagt gacataagct tggaggaact aaactctcaa       300
     attaataatt tgatgaaagc cccgttaaac tctcaaatta ataatttgat gaaagccccg       360
     ttaaagcctt ggcagaagtt caaaattctg aggcaaacat ctgataccat cgggtggata       420
     cactgccttc agagcccttc tgtttcgaat aaagtcctaa gggaggctga caggaaaatt       480
     aagagagcgg ttaaatcgat tcttcactta ccggttacta ttgccgactc gtcgatctat       540
     gcaagccagc gcgatggtgg tctcggggtc ttctgcttct caaggaagat tcctgtcatt       600
     cttcgctcgc ggtgggagtc gctacaggag atggctgatc ccgcgcttgg cgctgttctc       660
     ctgcaatcgg agagatgcat ggatagagtc tcgagactaa ttaaagagga ctggagatct       720
     gacagcgaaa tcaagaacag ttttaggcgg agccttgaga attcttggtg cgggggtgga       780
     atccatcaag tagggataat caagcttgca agtaaatatc tgctgcaccc ccctgccttt       840
     tggacaggaa gggactatgt gtccacaatt cagctgaggc tgaacgcgct tccttccaga       900
     ggtttaccat ccaacccccc cgaccagcgt atgtgtagga ctggatgtgg cagatctgag       960
     tccctatcac acatcttaca gagatgtgga ttcgttcagg gccatcgaat atcacgccac      1020
     aaccatgtcg caaggaaaat taggaggttg gccgagtcta aggggtggga agttagggag      1080
     gagcctacta tccgcaccaa tgaacaggtt ttcaaaccgg atctacttct gattcgcgat      1140
     aatgaattaa tagtgtgcga tgtctccatt aactgggaag gtccgtccca ctttccacac      1200
     actatcagga taaatttaat aagtatgcca ctccaggtgt tatccaatgg ctgcaacaac      1260
     gattttcccc gacaaactgt cagattcctt ccctttatat tgggtgctag gggatcttgg      1320
     tgtggcgaca acaggagttt agttgacgcg cttgaactca cacagcgcaa tatagaagat      1380
     ctaatactta catgtctcac tgggagcctt atcatctata agagcttcat gaagtcggtc      1440
     tggaggagga ctgtcgcggg tgactaa                                          1467
//
ID   R2C_NGi     repbase;    DNA;    INV; 3646 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Nasonia giraulti.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2C_NGi.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3646
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           190..3534
FT                 /product="R2C_NGi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="WVTSPRRPRYVGPQKKKASDGNDGRAAARAEPTNPGG
FT                 PDRADDDEGDVKFWCEFPGCDRFFMTRSGRGLHHKKGHPDWNDQRNLAGKQ
FT                 HRKEIWSEEERLLLAKKEAELAISGARFINVELRDFTARSLDAIKGQRKRP
FT                 DYKILVEKFVRELRVRGIRQGVASRSQQARAMAVAGAPAATSSGAPPVATQ
FT                 PPPSGRVLRSQVVEAPAMEIPVAESEGDSSGDELFEDVEPVRLSDLPPDRF
FT                 TIYFAGLEIPGTEDIYAHRLHTICLMTTWRTKEEVRLELGLFLKDLFPSKG
FT                 SQERPERTNLPDPRNRIERRRGEYKKCQDLWRRNKSTCVQRILKEDLSQGE
FT                 CLPRELMEPFWNATFTQNPGTAPVLPPPTEVYSSVWEPIRPENIKGNYPPQ
FT                 NTAAGIDGLTVGDLKGVSREMLARIFNLFMWCGKLPEHLCASRTILLPKKP
FT                 GAKVPGEFRPITVTSVLIRTFHKVLAERLKVVPLDPRQRGFRESDGCAENV
FT                 MLLDMTIRYHHERRRKMFLALLDMAKAFDSVSFESMREVLTTKGIPTPFIE
FT                 YFMTHLEDSFTVLQHGNWQSGKIHPTCGVKQGDPLSPPIFNFIMDEMLKRL
FT                 PKEIGVNLDGLFVNAMAFADDLSLVANTEQGLQILIDEATSFLGLCGLRAN
FT                 PNKCVTLAIKTIPKEKKTAIDPSSHFRIGNAVIPSLKRTDEWVYLGIKFNS
FT                 NGRLISDAKPKLIKDLELLTKAPLKPQQRLWALKVIVIPGILYRGTLGSST
FT                 AGYLRSLDCVIRAYVRRWLRLPGDCPNGYFHAAVADGGLGVHPIRYKAMVD
FT                 RLARLRKLEKSAYITGPEAARYLQRQVSIAENRLRDGANRIMSDASMLREF
FT                 LRELLYKSFDGRPLENSSKVPGQHRWVEEPTRFLSGADYMNCIRARIAALP
FT                 TAARCARGRLKDKHCRAGCGNVETLNHVLQFCHRTHGTRIGRHDAVVKYVV
FT                 GGLKKRGYAVKEEPKIVLQDVVYKPDMVATKEGKTLILDAQVLGDQRDMRL
FT                 AHEDKLRKYGAPEFKRKIRSETGSATIKSLSVTLSWRGLWGPDSVKGLLEE
FT                 GVILKKDLKILSTRVLIGALAGWRRFNERTSMATSGRREEVTTRMVRRWKR
FT                 RERVGVG"
XX
SQ   Sequence 3646 BP; 950 A; 854 C; 1037 G; 805 T; 0 other;
     cgggttcccc cgacttcggc ttgccgtggt ctggggctca ctgctttttg tggagtcatg        60
     gttacatggt gaccctggtt cctcgcaccc ccgctggaaa ctatctgggg aggccatgat       120
     tgggtaacga taaaggtcct ggtcgtgtcc tcctgagata ggctgaatgg gtcactaagt       180
     ggcacctaat gggttaccag ccctaggcgg ccgagatacg ttggtccaca gaaaaagaaa       240
     gcctcggatg gaaatgacgg acgagccgct gctcgtgccg aaccaacgaa tccgggcgga       300
     ccagaccgcg ctgacgacga cgaaggggat gttaaattct ggtgtgaatt tccaggttgt       360
     gatcgcttct ttatgaccag gagcggtaga ggcctccatc acaagaaagg ccaccctgat       420
     tggaatgatc agagaaacct ggccggaaag caacaccgaa aagagatatg gtcggaggaa       480
     gaacgtctcc tgcttgccaa aaaagaggcg gagcttgcca tcagtggagc taggtttatt       540
     aacgtagagt tgcgtgattt tacagcgcgc tccctagacg ctatcaaggg ccagcgaaag       600
     agacccgact ataagatctt agtcgagaaa tttgtcaggg agttaagggt tagaggcatt       660
     cgtcaaggag tggcctcgcg gagtcaacaa gctcgcgcga tggcggtggc aggagctcct       720
     gcagcgacgt cctcgggggc accacctgtc gcgactcaac caccaccatc aggtcgcgta       780
     ctaagatctc aggtcgttga agcaccagcg atggagatcc ccgtggcaga gtcggaaggt       840
     gactcctcgg gggacgagct gtttgaggat gtcgagcccg tgcgattgtc cgacctaccc       900
     cctgacaggt ttacgatata ctttgctggg cttgaaatac ccggcaccga agatatatat       960
     gcccacaggc tccataccat ctgcctgatg acaacgtggc gaaccaaaga agaggtaaga      1020
     ttagaacttg gcctcttttt gaaagatttg ttcccgagta agggcagtca agaacgcccg      1080
     gagagaacca acctgccgga cccgagaaat cggatcgaga ggcggagggg ggagtacaaa      1140
     aaatgccagg atctatggcg acgaaataag tcaacctgtg ttcagcggat ccttaaagag      1200
     gatctttcgc agggtgaatg tttgcctcga gagctgatgg agcccttttg gaatgcgact      1260
     ttcacccaga atcctggcac ggctccggtg ctccctcctc ccacggaggt ttattctagt      1320
     gtttgggagc ccattcggcc cgagaatatc aagggcaact atccgccgca gaacaccgcg      1380
     gcagggatag acggactgac agtgggtgac ctgaaagggg tgtcgcggga gatgctggcc      1440
     agaattttta acttattcat gtggtgcggc aaactgccag agcacctttg tgcctcacgc      1500
     acaattctcc tgcccaagaa acctggggcg aaagtccccg gcgaattcag gcctatcacc      1560
     gtgacatccg tcctcatccg gacctttcac aaggttctgg ccgaaagact gaaggttgtc      1620
     cctcttgacc cccgccaaag aggcttcaga gagtccgatg gatgtgcaga gaacgtgatg      1680
     ctactggaca tgaccatccg gtaccaccac gagcggcgca gaaagatgtt cttggccctg      1740
     ctagacatgg ctaaggcatt tgactcggtc tctttcgagt ccatgcggga ggttttgact      1800
     actaaaggca taccaacgcc atttattgag tattttatga cgcacttgga ggatagtttt      1860
     actgttcttc agcatggtaa ctggcaatcg gggaaaatcc acccaacatg tggtgtgaag      1920
     caaggcgatc cactgtctcc gcctatcttc aacttcatca tggatgaaat gttgaagagg      1980
     ttgcctaagg aaatcggggt taacttggac gggttatttg ttaatgctat ggcatttgcg      2040
     gatgacctga gccttgttgc caataccgaa caaggtctgc agatcctcat agatgaagct      2100
     acttcctttc tggggctctg tggactccgc gccaatccca ataagtgcgt caccctagca      2160
     attaagacca tcccgaagga gaaaaagacg gccattgacc cctcatcaca ttttaggata      2220
     ggtaatgcgg tgatcccctc gttgaagagg acagatgagt gggtgtactt agggatcaaa      2280
     tttaattcaa atggtcgcct tatctctgac gcaaaaccca agctcataaa agatcttgag      2340
     ctactaacta aggcaccact caaaccacag caaagactgt gggcgcttaa ggtgattgtc      2400
     attccgggca tcctttacag aggtaccctg gggagcagca ccgcaggcta cctacgctct      2460
     cttgactgtg taataagggc ctatgttcgg cgatggctac gtctccctgg agattgcccg      2520
     aatgggtatt ttcatgcagc ggttgcggat ggagggctgg gagttcaccc catacgatac      2580
     aaggcgatgg tagatcgcct tgcccggctc cgaaaattag agaaatccgc gtacatcacg      2640
     gggcctgaag ccgcacgtta tcttcaaaga caagtttcta tcgccgaaaa taggctccga      2700
     gatggggcca accgcattat gagtgatgcg agtatgctaa gggagttcct tcgggagctt      2760
     ctgtacaagt cctttgatgg tcgtcccctg gaaaattcca gcaaagtacc aggtcagcac      2820
     cgctgggtcg aggagccaac ccgtttccta tccggggcgg actatatgaa ttgtatacgt      2880
     gcgaggatcg cagctcttcc gactgcagcc aggtgtgcta ggggacgtct caaagacaag      2940
     cattgccggg caggttgcgg aaatgtggag acgcttaacc acgtcttgca attctgccac      3000
     cgtacccatg gcactcgcat tggacgccat gatgcggttg taaagtatgt tgtaggagga      3060
     ctcaagaaga gggggtacgc agtgaaagaa gagccgaaaa tcgtcttaca ggatgtggtg      3120
     tacaaacctg atatggttgc gaccaaggaa gggaaaacac tcattctgga cgctcaggtt      3180
     ctaggcgacc agcgtgatat gagactggca catgaagata agctccgtaa gtatggggcc      3240
     ccagaattta aacgaaagat caggagtgag acggggtcgg caaccattaa gtccttgtcg      3300
     gttacattga gctggcgagg gttgtgggga cctgactcag taaaggggct cctcgaagag      3360
     ggagtgattc taaagaagga ccttaagatc ttgtccacaa gagtacttat aggagctttg      3420
     gcaggctgga gaaggtttaa tgaaaggacg agtatggcaa catctggaag aagagaagag      3480
     gttacaacaa ggatggtgag aaggtggaag agaagagaga gggtcggtgt tggttagcgg      3540
     actggactgt ctggaggagt gtttaactcg ggttctcatg ggaacccgac aacgttgtta      3600
     tcttgtatga caattcataa aaaaaaaaaa aaaaaaaaaa aaaaaa                     3646
//
ID   R2D_NGi     repbase;    DNA;    INV; 493 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Nasonia giraulti.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2D_NGi.
XX
OS   Nasonia giraulti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-493
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..385
FT                 /product="R2D_NGi_1p"
FT                 /note="possible carboxyl terminal end of ORF."
FT                 /translation="EGLRKPDLIAKRGNMAILVDGQVVSEQADLSRAHRQK
FT                 ATKYVGLKRQIEERYGVKEVHFTSVTLSARGIWSKTSAADLVRLGVLKIRD
FT                 YKVISTRVLIGGVSIFKDFNRRTSRTAGQRAGVLHRQGIG"
XX
SQ   Sequence 493 BP; 173 A; 84 C; 137 G; 96 T; 3 other;
     ggaaggactg agaaagccgg accttattgc caagagagga aacatggcga tccttgttga        60
     cggacaagtg gtgagtgagc aggcagacct atcaagagca catcgtcaga aggcaacgaa       120
     gtacgtagga ttgaagcggc agattgaaga aagatatgga gtaaaagaag tgcattttac       180
     atctgtgaca ctatcagcaa gaggaatttg gagcaagaca tcggcagcgg acctagtacg       240
     acttggagtg ttgaagataa gggactacaa agtgatatcc acccgggtat taatcggagg       300
     agtttccatc ttcaaagact tcaatcggag aacatcacgg acagcaggac aacgggcagg       360
     agtgcttcat cggcagggca tcggctgaag agnagaagaa gaaactttcg gttattctcg       420
     gatgcctggg actcggatac aggcagaatg tntattacnt agtaattgat taaaaaaaaa       480
     aaaaaaaaaa aaa                                                          493
//
ID   R2E_NLo     repbase;    DNA;    INV; 1550 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Nasonia
DE   longicornisi.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2E_NLo.
XX
OS   Nasonia longicornis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1550
RA   Stage D.E. and Eickbush T.H.;
RT   "Maintenance of multiple lineages of R1 and R2 retrotransposable
RT   elements in the ribosomal RNA gene loci of Nasonia.";
RL   Insect Molecular Biology 19(Suppl 1), 37-48 (2010).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1433
FT                 /product="R2E_NLo_1p"
FT                 /note="carboxyl terminal end of ORF."
FT                 /translation="KFSXVDSRSQSXRRRXYLXKCGLXVNAXKCMTVSMLT
FT                 VPREKKTVIDPKMKFRCLGRTLPAVSRSSEWKYLGIPFTPEGKWTGNPLQS
FT                 LMTSTEILTKAPLRPQQRLFGLRCVVIPSLYHLLVLGSANISLLRKMDKRI
FT                 RTIVKKWLDLPNDTPSAYFHAAVQHGGLGIPSLRWMVPVQRLKRLKNLPYY
FT                 RPDQPEYYHLSKEIKTTLNRLKDKNVQLVTRLDVDKRMAELLYKAVDGSAL
FT                 KGSNAVPSQHQWVREGTNFLKGTDFIGLCKLRINALPLRCRTARGRPKERL
FT                 CRAGCHNQETLNHVLQHCPRTHEMRIKRHDAVVNYIAKSLNEQGFEVDCEP
FT                 HIQGPAGLRKPDIVVKKEDAAIVVDGIIAAEQADXKRVHNEKRKKYXDLKP
FT                 IIKEKYGVEKVEFTXATLXARGLWSSDXAXDLXRFSVIKSKDLKVISTRVL
FT                 VGGMAIFHDFNRRTSRSXGRRRGQEPPRQGEG"
XX
SQ   Sequence 1550 BP; 496 A; 295 C; 419 G; 321 T; 19 other;
     gcaagttctc ctnagtggac tccaggagtc aatcancaag gcggcggnag tacctatnna        60
     aatgtggttt ganagtgaat gctgnaaagt gcatgacggt gtccatgctt acagtaccaa       120
     gagagaagaa gacggtgata gatccnaaga tgaagtttag atgtctggga aggacccttc       180
     cggcagttag caggtcgagt gaatggaaat atttaggaat cccgttcacg ccggagggta       240
     aatggacagg taatcctctc cagagcttaa tgacatcgac ggagatactc acgaaggcgc       300
     ctctgaggcc tcagcaacgg ttgtttggct taaggtgtgt cgtcatacct agtttatacc       360
     atcttttagt cctagggagt gcaaatatca gcctacttcg gaaaatggat aagagaatta       420
     ggacgattgt aaagaagtgg cttgatctcc caaacgacac gccttctgcc tacttccatg       480
     ctgcagttca gcatggtgga cttggaatac cttccctcag atggatggtc ccggtgcaga       540
     ggttgaagag gctcaagaac ctgccatact acagaccaga tcagccagaa tattatcact       600
     tatctaagga aattaaaact accctcaaca ggctaaagga taagaacgtc caactcgtga       660
     ccaggctaga cgtggacaaa agaatggctg aacttctgta caaagcagtg gatggaagtg       720
     cactgaaggg ctctaatgcg gttccatcac aacatcagtg ggtccgagaa gggactaact       780
     ttctgaaggg gacagatttt ataggtctgt gtaaactgag aatcaacgct ctaccactta       840
     gatgtaggac ggccagaggc aggccaaaag aacggctctg cagagcaggc tgccataacc       900
     aggaaacact gaatcatgtt ttgcagcact gcccgaggac gcacgagatg aggattaaga       960
     ggcacgatgc cgtggtgaac tacatcgcaa agtccctcaa tgagcagggc ttcgaagttg      1020
     attgtgaacc acacatacaa ggaccagcag gtttgcgaaa gccagacatc gtagtgaaaa      1080
     aggaagatgc agcaatcgta gtggatggga taatagcggc ggagcaagct gatntgaaga      1140
     gagtgcataa tgagaagaga aagaagtatg nagacctgaa gccgatcatc aaggagaagt      1200
     atggagtgga gaaggtggag tttacgtntg caacattgtn tgcaagagga ctttggagta      1260
     gcgattntgc atnggacctg ntaagattca gtgtaatcaa gtcaaaggat ttgaaggtga      1320
     tctcgacgcg agtacttgta ggagggatgg ccatctttca cgacttcaac aggagaacat      1380
     caaggagcnc aggnaggaga agaggacaag aaccgccaag acaaggagaa ggttgaagaa      1440
     gagcaagagg aagctaacgg ccggatgcct gggttacacg ataaccattc ggatcaggca      1500
     taatgtntat tnatgatata gattaaaaaa aaaaaaaaaa aaaaaaaaaa                 1550
//
ID   R2_AM       repbase;    DNA;    INV; 4277 BP.
XX
AC   AF015815;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Anurida maritima retrotransposon R2, complete sequence.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_AM.
XX
OS   Anurida maritima
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Poduromorpha; Poduroidea; Neanuridae;
OC   Pseudachorutinae; Anurida.
XX
RN   [1]
RP   1-4277
RA   Burke D.W., Malik S.H., Lathe C.W. and Eickbush H.T.;
RT   "Are retrotransposons long-term hitchhikers?.";
RL   Nature 392(6672), 141-142 (1998).
XX
RN   [2]
RP   1-4277
RA   Burke D.W., Malik S.H., Jones P.J. and Eickbush H.T.;
RT   "The domain structure and retrotransposition mechanism of R2
RT   elements are conserved throughout arthropods.";
RL   Mol. Biol. Evol 16(4), 502-511 (1999).
XX
RN   [3]
RP   1-4277
RA   Burke D.W. and Eickbush H.T.;
RT   "R2_AM.";
RL   Direct Submission to Genbank (24-JUL-1997)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
RN   [4]
RP   1-4277
RA   Burke D.W. and Eickbush H.T.;
RT   "R2_AM.";
RL   Direct Submission to Genbank (09-SEP-1998)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015815; Positions       1    4277.
XX
SQ   Sequence 4277 BP; 1116 A; 919 C; 1195 G; 1047 T; 0 other;
     tcagttggca cttctatatt agttgtgtac ccaagagata gttactgtgt aggacatagg        60
     gggttctgct taccctctat gttgctactt acggccaatc atatggtcta gctgtacgtc       120
     gccttgtcgt ggtcccgccg ctcaagatcc ttcccatggg atcttgctaa agacgtacgt       180
     acggtgaacg gggttacatg ttgaacattg tgatcgttca acaatcccca aaaaggcgaa       240
     agctaaagcg cttgggtgac ttagtacgtt aaattggaag tttggcacta tctccattag       300
     gacctcacgg aacatttaat cgaaaagtca catggcggcc taaaagcccc accaatgcgc       360
     tacgccactg gtgatcctcc agaaatgggt aaggattagt acggctacag tgggaccccc       420
     cagatctccg gatctgactg cattagatgg agaatgatgc agtgaccgag tacgttgaat       480
     ctttgccttg gtctacggat aacgtacttt aggttggggt acagggtgaa gtaacctccc       540
     tccgtctctt gtgccaacaa gattcggagg tttatgcaac cacaatgaac aggaaaaata       600
     attacacccg tggtaaccgg ttcagttccg gaagtcccgg caattttgtg gttgtaaggg       660
     atcccgcaca ggatctcccg ttcaaatgtg cattttgcga acggacattt acaacgtcca       720
     atgggaaggg actccatgaa ctgagaagtc acccgaagga gtataacatg cgtgttccgg       780
     ttgcgaaaaa gcgggcgagg tggtcggagg aggagttaag tcagcttgct gaagctgaac       840
     atgacctcaa aagtaagaag caatatgctt ccgaactcga cctaagccgg gatctggagg       900
     gttgtatggt ggggagatct ctggaatcca tcaggggaca gaggaagctc ccacggtatg       960
     ttgagatctt taaccgactg tctaatagcc gagcatcaat cccagaaatt ggtgaaggtg      1020
     acgaggaagc taattcagtc ggttccgatg aggtgtttca tgcgtccggt catgggacag      1080
     ggattaccga ggcactagag gtgctggttt cgaaacggcc tggtgaggcg tttcgggagg      1140
     aagtcctgaa tggaatagta cgagcgaaac ttgagggtag cgaagtcttt gtacgacttg      1200
     agcaatattt gtcccggatg tttgtgggac aaagctcgtt ggcttctaca ccttgtagtt      1260
     cgggtgaggg gaaattgccc ttgacatgtt ctggctccaa caaaaaggaa cagaggtctg      1320
     atctgttctc ccggttccct gaaaagggtc cgagtgtatc agtttcagcg ccctctgtct      1380
     ccgacatggg acgtaaacgc cgcaaggcgt tatctcgtaa cgaggcaact caagtacgag      1440
     aggaatttgt tgagtttgcc agaaatgtcg atccaatacc ccgacgcaag tgtgctagag      1500
     ttaacgaagg cctacaaggt aaccagaggt tacctaaaga aaagccgatg accgctaggg      1560
     caaaaatgcg gcaccttcgg cttctaagat accgtaggct gcaagagttg tacaaaaaag      1620
     accgttccct cgcagcaaaa caagtgctgc aggacatgct tgattccaaa ccaggacgga      1680
     atcccgaagc ggttaagtac tgggctgaaa ccatgggtaa agaatccacc ggtattgatg      1740
     tgtccgtaat gaccggacgt ccgagatacc gagacaatgt atggagtcca atatacccgg      1800
     gggaggtttc agcagctgta aagctgatgg atagtagcgg ggctacaggt cccgatggtt      1860
     tcagtgtgag atctctgaag tgtacaccca gcagggttct ggcgaaggtc tttaaccttt      1920
     ttcttttgga ggaaaagctt ccggcattcc tgatgacctc aagaacggtc ttagtcccga      1980
     aagttaagga gcctaaggct cctacggact acagaccaat ctcagtttcg tccaccttgg      2040
     tccggctttt tcacaaaatc ctggcgagaa gactaacctt ggcgagcggg ttagacagca      2100
     ggcaacgcgg cttcgttcct gttgatggat gtgccgagaa cctcgtggtt ctcgaaagtg      2160
     ccatcaggag cgcgaagaac tataagcgtt ctctattcgt agcttctatg gatattaaga      2220
     atgcttttgg ttcggtagcg catgaagcca ttttcgaagc gttgtctaag tcgggtgcgc      2280
     ctgactcttt tgtgacatat gtgcgaaact gttacgacgg tttcgcgagt gttgtaaaac      2340
     ttggtcggga cactgcccaa actactgtga gacaaggcgt cttacagggt gaccccttgt      2400
     cacccattct gtttaatctg gttatagatc agataataag gtctcttcct gagacggtgg      2460
     gtgttcaact cgatgcgaac acgaaactta actctatggc atttgctgat gacctaatcc      2520
     tgctgagttc atcggaggcg ggtatgaggc ggatgttggg agtcctggct ggagtgagtt      2580
     caaaatttgg acttattttc catccaggta agtgcaagta cctagctatg atatgggcgg      2640
     ggaaacagaa aaagatgaag atcgcaacgg acttgagctt tgagataggt ggcggattta      2700
     tgacgccggt gggagtaact gagacatgga agtatttggg ggcttatttg ggacagattg      2760
     ggattcaacc agcaaggctc tctttgcaga cttttctgga gagaatcgct aagtccccgt      2820
     tgaagccgca acagaagttg tacctaattc gggtccattt acttcctaag ctcatatacc      2880
     cactggtaat ggcgcctatt agggcctcaa tgctcaataa gttggatcga atggttcgtg      2940
     ttgccctaac tggcaaggat ggtattctgc acttacccca gtcagtgcct tctgccttct      3000
     tctatgcgcc gataggtgag ggtggtcttg ggctaatgga gttgaggaca tctataccag      3060
     caatggtaaa ggcgagattc gagagaatga tgaactccac ttgtcatcat gtgagagctg      3120
     cagctaaggg cgctgcaaac tcgaacagaa tcgctttggc aaatcgattc cttcggaaga      3180
     ccgcagatgg tattcccgtg actagtgcaa agctggttaa ggagtaccag gcggcaaagt      3240
     tgcacggctc atttgatggg aaaccattga gtgaggctgg gcgggttaaa ggaatccact      3300
     catggacatg tgatggtagg atggtgatga caggacaggc tttctgtgag gcccttaaga      3360
     tccgcatcaa tgctcttcca tgtctctcta ggtataatcg gggaaccgag aagcctagag      3420
     aatgtagggc gggatgcaaa accacagagt ccctgaacca tgtcttacaa gtttgtccga      3480
     gaacacatga catgagagtt gcgcgacatg acaagctagt caatagacta ggtggatatt      3540
     tgagccagaa agggttcgaa atccacacgg aaccaagaat cattacgtct cttggattga      3600
     ggaagcctga tatcattgcg atcaaaggag agaagggagt ggtacttgat gcgcaaatcg      3660
     gaggagctgc aaatttaaat gcagctcatg acgctaaaat gtgttactac tcctcctctc      3720
     cggagatcaa agaatgggta acgggaaagg gagcgccgga cgtgtcctac ggcgcatgca      3780
     ttgtttcgcc acaaggcata atgtcggagg agtcctggaa aaccctgcgg gggttaggat      3840
     tctcaaaggg gatgctgaac tccttggtcg tgactgtcat ggagcaaagc acatatgttt      3900
     ggcatgtgtt caaccggagc actgcctcat atgggtggaa gcgcaggcga aagcgcaagt      3960
     gggattagct cgtttttagc aggaacggcg aagcctgaag gcaaatgttt gtttgagcgg      4020
     gaccctccct atgaagctct aaacaagctg atggccttgg aggcacgggg tctcgagcaa      4080
     tcacgtgttg atgtgaagtg gtgatcacta ccaccgctgg ggccaattag atgaacatgt      4140
     aagacccaac tggtaaggat tgaaagtagg agtcgacgta cagactctga atgtagggca      4200
     taacgtcaat ttgcctgatc gctggtgaat ctcgcttgcg agcggtgtga aatgtgccac      4260
     cttatcagtg gctatag                                                     4277
//
ID   R2_BM       repbase;    DNA;    INV; 4212 BP.
XX
AC   M16558;
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   27-DEC-2011 (Rel. 16.12, Last updated, Version 3)
XX
DE   Bombyx mori rDNA insertion element R2 (type II), complete cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; transposon;
KW   reverse transcriptase; retrotransposon; insertion sequence; BMR2;
KW   R2_BM.
XX
NM   R2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-4212
RA   Burke D.W., Calalang C.C. and Eickbush H.T.;
RT   "The site-specific ribosomal insertion element type II of Bombyx
RT   mori (R2Bm) contains the coding sequence for a reverse
RT   transcriptase-like enzyme.";
RL   Mol. Cell. Biol 7(6), 2221-2230 (1987).
XX
DR   GenBank; M16558; Positions      64    4275.
XX
FH   Key           Location/Qualifiers
FT   CDS           620..3961
FT                 /product="R2_BM_1p"
FT                 /translation="MMASTALSLMGRCNPDGCTRGKHVTAAPMDGPRGPSS
FT                 LAGTFGWGLAIPAGEPCGRVCSPATVGFFPVAKKSNKENRPEASGLPLESE
FT                 RTGDNPTVRGSAGADPVGQDAPGWTCQFCERTFSTNRGLGVHKRRAHPVET
FT                 NTDAAPMMVKRRWHGEEIDLLARTEARLLAERGQCSGGDLFGALPGFGRTL
FT                 EAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGE
FT                 ERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRN
FT                 DLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHS
FT                 LEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVE
FT                 EIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQC
FT                 RTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGF
FT                 ICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLR
FT                 LRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFN
FT                 VVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDC
FT                 VGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVER
FT                 WRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQH
FT                 GFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS
FT                 VRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVD
FT                 STTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFV
FT                 QFVHTHINALPSRIRGSRGRRGGGESSLTCRAGCKVRETTAHILQQCHRTH
FT                 GGRILRHNKIVSFVAKAMEENKWTVELEPRLRTSVGLRKPDIIASRDGVGV
FT                 IVDVQVVSGQRSLDELHREKRNKYGNHGELVELVAGRLGLPKAECVRATSC
FT                 TISWRGVWSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSV
FT                 MGGGVG"
XX
SQ   Sequence 4212 BP; 925 A; 1083 C; 1325 G; 879 T; 0 other;
     cgggagtaac tatgactctc ttaggggcga tacgcataat tttaattttt cgattcaaat        60
     ccagtcgtct taatctggtg accagtggcg cggtcaccag tatagtgcac aggacgtgaa       120
     tggctccgag gctggcggag tcactcacta taagtgtgag agacgatgtc ctgtgccaag       180
     tatacgtcca accctaacgg gttaagtgaa attagttgct cataacaggg acggtgtacc       240
     tgtttgctcg tggctggcta tcgaatggac gggaccaata cacccccctg ttagtaatgg       300
     ggtaagagag agcggtctga aactatggcc gagatcacga cgccccactc ctacccataa       360
     cctgcacgtg gtaccgccgc acattgaccg atacgggagg aggggcagca cttgaatcac       420
     gtagtcttgg tgtagccatt gcgggactac agccctcgta agtgccgcct tagaacgcaa       480
     cggggcaata ggtgggccgg ggcgctagcg ggggggagta atctcccctg ttggcgtgca       540
     ccgcactgct ccctctgggg gcagtgtcat ccggaaacag gtgggccggg gcgccaccag       600
     gggggagcaa tccctcctga tgatggcgag caccgcactg tcccttatgg gacggtgtaa       660
     cccggatggc tgtacacgtg gtaaacacgt gacagcagcc ccgatggacg gaccgcgagg       720
     accgtcaagc ctagcaggta ccttcgggtg gggccttgcg atacctgcgg gcgaaccctg       780
     tggtcgggtt tgcagcccgg ccacagtggg tttttttcct gttgcaaaaa agtcaaataa       840
     agaaaataga cctgaagcct ctggcctccc gctggagtca gagaggacag gcgataaccc       900
     gactgtgcgg ggttccgccg gcgcagatcc tgtgggtcag gatgcgcctg gttggacctg       960
     ccagttctgc gaacgaacct tttcgaccaa caggggtttg ggtgtccaca agcgtagagc      1020
     ccaccctgtt gagaccaata cggatgccgc tccgatgatg gtgaagcggc ggtggcatgg      1080
     cgaggaaatc gacctcctcg ctcgcaccga ggccaggttg ctcgctgagc ggggtcagtg      1140
     ctcgggtgga gacctctttg gcgcgcttcc agggtttgga agaactctgg aagcgattaa      1200
     gggacaacgg cggagggagc cttatcgggc attggtgcaa gcgcaccttg cccgatttgg      1260
     ttcccagccg ggtccctcgt cgggggggtg ctcggccgag cctgacttcc ggcgggcttc      1320
     tggagctgag gaagcgggcg aggaacgatg cgccgaagac gccgctgcct atgatccatc      1380
     cgcagtcggt cagatgtcgc ccgatgccgc tcgggttctc tccgaactcc ttgagggtgc      1440
     ggggagaaga cgagcgtgca gggctatgag acccaagact gcagggcggc gaaacgattt      1500
     gcacgatgat cggacagcta gtgcccacaa aaccagtaga caaaagcgca gggcagagta      1560
     cgcgcgtgtg caggaactgt acaagaagtg tcgcagcaga gcagcagctg aggtgatcga      1620
     tggcgcgtgt gggggtgtcg gacactcgct cgaggagatg gagacctatt ggcgacctat      1680
     cctcgagaga gtgtccgatg cacctgggcc tacaccggaa gctcttcacg ccctagggcg      1740
     tgcggagtgg cacgggggca atcgcgacta cacccagctg tggaagccga tctcggtgga      1800
     agagatcaag gcctcccgct ttgactggcg aacttcgccg ggcccggacg gtatacgttc      1860
     gggtcagtgg cgtgcggttc ctgtgcactt gaaggcggaa atgttcaatg catggatggc      1920
     acgaggcgaa atacccgaaa ttctacggca gtgccgaacc gtctttgtac ctaaggtgga      1980
     gagaccaggt ggaccggggg aatatcgacc gatctcgatc gcgtcgattc ccctgagaca      2040
     ctttcactcc atcttggccc ggaggctgtt ggcttgctgc ccccctgatg cacgacagcg      2100
     cggatttatc tgcgccgacg gtacgctgga gaattccgca gtactggacg cggtgcttgg      2160
     ggatagcagg aagaagctgc gggaatgtca cgtggcggtg ctagacttcg ccaaggcatt      2220
     tgacacagtg tctcacgagg cacttgtcga attgctgagg ttgaggggca tgcccgaaca      2280
     gttctgcggc tacattgctc acctatacga tacggcgtcc accaccttag ccgtgaacaa      2340
     tgaaatgagc agccctgtaa aagtgggacg aggggttcgt caaggggacc ctctgtcgcc      2400
     gatactcttc aacgtggtga tggacctcat cctggcttcc ctgccggaga gggtcgggta      2460
     taggttggag atggaactcg tgtccgctct ggcctatgct gacgacctag tcctgcttgc      2520
     ggggtcgaag gtagggatgc aggagtccat ctctgctgtg gactgtgtcg gtaggcagat      2580
     gggcctacgc ctgaattgca ggaaaagcgc ggttctgtct atgataccgg atggccaccg      2640
     caagaagcat cactacctga ctgagcgaac cttcaatatt ggaggtaagc cgctcaggca      2700
     ggtgagttgt gttgagcggt ggcgatatct tggtgtcgat tttgaggcct ctggatgcgt      2760
     gacattagag catagtatca gtagtgctct gaataacatc tcaagggcac ctctcaaacc      2820
     ccaacagagg ttggagattt tgagagctca tctgattccg agattccagc acggttttgt      2880
     gcttggaaac atctcggatg accgattgag aatgctcgat gtccaaatcc ggaaagcagt      2940
     cggacagtgg ctaaggctac cggcggatgt gcccaaggca tattatcacg ccgcagttca      3000
     ggacggcggc ttagcgatcc catcggtgcg agcgaccatc ccggacctca ttgtgaggcg      3060
     tttcgggggg ctcgactcgt caccatggtc agtggcaaga gccgccgcca aatctgataa      3120
     gattcgtaag aaactgcggt gggcctggaa acagctccgc aggttcagcc gtgttgactc      3180
     cacaacgcaa cgaccatctg tgcgcttgtt ttggcgagaa catctgcatg catctgttga      3240
     tggacgcgaa cttcgcgaat ccacacgcac cccgacatcc acaaagtgga ttagggagcg      3300
     atgcgcgcag ataaccggac gggacttcgt gcagttcgtg cacactcata tcaacgccct      3360
     cccatcccgc attcgcggat cgagagggcg tagaggtggg ggtgagtctt cgttgacctg      3420
     ccgtgctggt tgcaaggtta gggagacgac ggctcacatc ctacaacagt gtcacagaac      3480
     acacggcggc cggattctac gacacaacaa gattgtatct ttcgtggcga aagccatgga      3540
     agagaacaag tggacggttg agctggagcc gaggctacga acatcggttg gtctccgtaa      3600
     gccggatatt atcgcctcca gggatggtgt cggagtgatc gtggacgtgc aggtggtctc      3660
     gggccagcga tcgcttgacg agctccaccg tgagaaacgt aataaatacg ggaatcacgg      3720
     ggagctggtt gagttggtcg caggtagact aggacttccg aaagctgagt gcgtgcgagc      3780
     cacttcgtgc acgatatctt ggaggggagt atggagcctg acttcttata aggagttaag      3840
     gtccataatc gggcttcggg aaccgacact acaaatcgtt ccgatactgg cgttgagagg      3900
     ttcacacatg aactggacca ggttcaatca gatgacgtcc gtcatggggg gcggcgttgg      3960
     ttgagccttg cacagtagtc cagcggtaag ggtgtagatc aggcccgtct gtttctcccc      4020
     cggagctcgc tcccttggct tcccttatat attttaacat cagaaacaga cattaaacat      4080
     ctactgatcc aatttcgccg gcgtacggcc acgatcggga gggtgggaat ctcgggggtc      4140
     ttccgatcct aatccatgat gattacgacc tgagtcacta aagacgatgg catgatgatc      4200
     cggcgatgaa aa                                                          4212
//
ID   R2_DA       repbase;    DNA;    INV; 1785 BP.
XX
AC   U13640;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   14-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Drosophila ambigua transposable element R2 (partial cds).
XX
KW   Non-LTR Retrotransposon; Transposable Element; R2_DA.
XX
OS   Drosophila ambigua
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; obscura subgroup.
XX
RN   [1]
RP   1-1785
RA   Eickbush D.G., Lathe W.C., Francino M.P. and Eickbush T.H.;
RT   "R1 and R2 retrotransposable elements of Drosophila evolve at
RT   rates similar to those of nuclear genes.";
RL   Genetics 139(2), 685-695 (1995).
XX
DR   EMBL/GenBank/DDBJ; U13640; Positions       1    1785.
XX
FH   Key           Location/Qualifiers
FT   CDS           46..1563
FT                 /product="R2_DA_1p"
FT                 /translation="MIIDRLLRVLPNEIGATVGNAITNAERFADDLVLFAE
FT                 TPMGLQKLLDTTVDFLSSVGLTLNSDKCFTIGIKGQPKQKCTVVIPQSFCI
FT                 GSRPCPALKRSDEWKYLGIHFTAEGRTRYSPAEDLGPKLLRLTRSPLKPQQ
FT                 KLFALRTVLIPQLYHKLTLGSVMIGVLRKCDIVVRSFIRKWLGLPMDVSTA
FT                 FFHAPHTCGGLGVPSVRYLAPMLRMKRLSGIKWPHLVQSEAASSFLEVELN
FT                 KARGRTLAGENELTSRTAIETYWADKLYMSVDGSGLREARLFRPQHGWVFQ
FT                 PTRLLTGKDYRNGIKLRINALPSRSRTTRGRHDLARQCRAGCDAPETNNHI
FT                 LQNCYRTHGKRVARHNCVVNNLKRILEEKGHTVHVEPNLQGESAVSKPDLV
FT                 AIRQNHAFVIDAQIVTDGLSLDQAHLPKVERYKRPDVITAVRRDFNVSGAV
FT                 EVLSATLNWRGIWSNQSVKGLITNNLLTTSDSNVISARVVIGGLYCFRQFM
FT                 YLAGYSRNWT"
XX
SQ   Sequence 1785 BP; 503 A; 398 C; 451 G; 433 T; 0 other;
     cccttgggat cccagggtga cccgctgtct cccataataa tcaacatgat cattgatcgg        60
     ttgcttaggg tccttcccaa tgagattggt gccacagtcg gaaacgccat aacaaacgcg       120
     gaacgattcg cagatgatct agtcctattt gcggaaactc caatggggct tcagaaattg       180
     ttggacacga ctgttgactt tttgtcttca gtcgggctta ccctaaactc ggataaatgt       240
     tttacaattg gaataaaggg gcaaccaaaa cagaagtgta ctgtggtgat acctcagagc       300
     ttctgcatcg ggtcgcgccc gtgtccagca ctgaagcgtt cagacgagtg gaagtattta       360
     ggcatacatt tcactgcgga agggaggacc aggtacagtc cagccgaaga cctcggtcca       420
     aagctgttga gattgacaag gtctccccta aaacctcaac agaaattgtt cgccctcaga       480
     actgtcctta tcccacaact ctatcacaag ctaacccttg ggagtgtgat gataggtgtt       540
     ctgagaaagt gtgatatcgt tgtacgttcg ttcataagaa aatggttagg acttcctatg       600
     gacgtgtcaa ctgcattctt ccatgctcct cacacgtgtg ggggtctcgg ggtgccttca       660
     gttcgttatt tagctccaat gctacgtatg aaaagattga gcggtattaa atggccacat       720
     ctcgtacaat ccgaggcggc cagctcattc ttagaggtcg aactgaataa agcccggggc       780
     agaactctgg ctggagaaaa tgagttgaca tcgaggacag ctatcgaaac gtactgggcg       840
     gacaagttgt atatgtctgt tgatggtagc ggcctacgtg aagcgcgact ctttcgtccg       900
     cagcacgggt gggtgtttca gcccacgcgt ttgctaacag gtaaagatta cagaaacgga       960
     atcaaactgc gaataaacgc cctaccttca aggtctcgaa ccacgagggg aaggcatgac      1020
     ctggctcgac aatgtcgtgc gggatgtgat gctcccgaga caaacaacca catcctgcag      1080
     aattgctacc gtacgcatgg gaagcgggta gcaagacata actgtgtggt caacaacctt      1140
     aagaggattc ttgaggaaaa gggccataca gtacacgtcg agccgaattt gcagggcgaa      1200
     tccgcggtaa gtaaacctga cttggtggca atccgacaaa atcacgcttt cgtgattgat      1260
     gcgcaaatag taacagatgg actgtccctc gaccaagcgc acctgccgaa ggttgagaga      1320
     tataaaagac ctgacgttat tactgcagtg cggcgagatt ttaatgtgtc tggcgctgtc      1380
     gaggtccttt ccgcgacatt aaactggcgg gggatctgga gtaatcaatc tgtcaaagga      1440
     ctgattacaa acaatctcct aacaactagt gacagcaatg tcattagtgc cagagtggtg      1500
     ataggcggat tgtactgctt tagacagttc atgtatctcg caggatactc tcgaaactgg      1560
     acctagccga aacactatgt tggaaagaag acgcttgcta cctaggcata atgtaaaatt      1620
     aggtataaac atcgcagttg taaacttgag gtggtttagt acgtaggcgt gatgatgact      1680
     tgttgaagtg aaaccacgaa tcgtgctcgc tattacgttg gcccttaata gtatctatga      1740
     agatttccca tcctcagcgg tcaaaaaaaa aaaaaaaaaa aaaaa                      1785
//
ID   R2_DAn      repbase;    DNA;    INV; 3548 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   ananassae.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3548
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           125..3292
FT                 /product="R2_DAn_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FERRKDPWGYRPPGTLKQIGATENNEPRNLNRFVRGE
FT                 STASSLESTQFGTSAEVNLAGRVPCTICEMTFSSKRGLGVHMSHRHKDDLD
FT                 AQRLRVDKKARWSEEETLMMARKEVELAASGVRFLNKKLAEIFTHRSADAI
FT                 SSYRKRSEYKAKLEQIRGQSVPTPEAEEINTTQRRPSNSEQNRRVPRSEGG
FT                 PIAPTEQTNNEILRVLQGLAPVVCLPRWRAEVLQNIVDNAQVSGQETTLQS
FT                 LSSYLMEIFPPRNEPHILTRPRTEPRNMRQRRRQQYARVQRNWDKHPGRCI
FT                 KSLLEEDDESVMPNQEVMEPYWRRVMTQPSSSSIKRDMFNMEHSLERVWSA
FT                 VNQRDLRATKVKLSSSPGPDGITPKTARSVPEGIMLRIMNLILWCGNLPYS
FT                 IRLARTIFIPKKATANQPQDYRPISVPSVIVRQLNAILASRLSAAINWDTR
FT                 QRGFLPTDGCADNTTIVDLVLREHHKRFKSCYIGTLDVSKAFDAVAHEAVY
FT                 NTLASYGAPKGFINYLRKAYEGGGTMLAGNGWVSEAFIPARGVKQGDPLSP
FT                 ILFNLVIDRLLRSLPSEIGAKVGNAMTNAAAFADDIVLFAETPMGLQKLLD
FT                 TTVCFLSSVGLTLNTDKCFTVSIKGQAKQKCTVVERRSFLIGGRECPSLKR
FT                 TDEWKYLGIKFTAEGRARYDPAEDLGPKLLRLTRAPLKPQQKLFALRTVLI
FT                 PQLYHKLTLGSVTIGVLKKFDKLVRYTARKWLGLPVDVPVSFFHAPHKSGG
FT                 LGLPSLRWTAPMLRLKRLSNIKWPHLERSEVASSFVEEEMRRARDRLQAGS
FT                 EELLTRSQVDSYLANRLHMSVDGCGLREAERFAPQHGWVSQPTRLLTGKEY
FT                 TDGIKLRINALPSRSRTTRGRHELERRCRAGCDAPETTNHILQQCYRTHGR
FT                 RIARHNGVVNFLKRGLERRGCVVHVEPSLQGETGLNKPDLVAIRQNRIYVI
FT                 DTQIVTDGHSLDQAHQRKVGKYDTPDIRTNLRRSFGAFDIEFHSATVNWRG
FT                 IWSGQSVKRLIASDLLSSGDSNIISVRVISGGLWSWRQFMYLSGYTRDWT"
XX
SQ   Sequence 3548 BP; 962 A; 826 C; 947 G; 813 T; 0 other;
     agaatatgga tttgattgtg cagagggggt gctataccgt aactcgtaag ccatgcaatc        60
     agatcaagtc gactcaaaac ctcctcgtgg tattctctgg gtgccagtat ttactggtag       120
     ctgatttgag cggcgaaagg atccttgggg ttaccggccc cctggaacct taaaacaaat       180
     tggtgcaact gaaaataacg agcctcggaa cctaaatcgt tttgtaagag gagaatccac       240
     ggcttccagc ctggagagca cacaatttgg aaccagtgca gaggttaacc ttgcagggag       300
     ggtgccctgt acgatatgtg aaatgacgtt cagctccaag aggggtttgg gcgttcacat       360
     gtcacatcgg cacaaagacg atcttgatgc acaacgtctt cgtgtcgata aaaaggcaag       420
     gtggtcagag gaagaaacct tgatgatggc gagaaaggag gttgagcttg cagcaagtgg       480
     tgtacgattt cttaataaga agctagcgga gattttcacc caccgcagtg ccgatgcgat       540
     atcttcgtat cggaagagga gtgagtacaa ggcaaaacta gagcagataa gggggcaatc       600
     cgttcccacc ccagaagcag aagaaatcaa caccacacag cgccgcccta gtaatagcga       660
     gcaaaaccga cgagtaccaa gatcagaagg gggaccaatc gcaccaaccg aacagacgaa       720
     caacgaaatc cttagggtac tacagggtct agcacctgta gtatgcttac cccggtggag       780
     agccgaggtc ctgcaaaata tcgtagataa tgcgcaggtc tcgggacagg aaaccactct       840
     ccaaagttta tccagttatc tcatggaaat ttttccgcca cggaatgaac cgcacattct       900
     gacgaggccc cgaacggagc ctcgaaatat gagacaacgt agaaggcagc agtacgcgag       960
     ggttcagcgt aactgggata aacatccggg gcgatgcata aagtccctac tggaggaaga      1020
     tgatgagtcg gtgatgccaa accaggaggt catggagcca tattggagac gggtaatgac      1080
     tcagcctagc tcaagctcga taaaacgcga catgtttaac atggagcatt cactcgagag      1140
     ggtatggtcc gctgtgaacc agcgcgatct tagggccaca aaagtcaaat tatctagttc      1200
     tccaggcccg gacgggatca ctccaaaaac tgccaggagt gtccccgaag gcattatgct      1260
     tcgcataatg aacttgatcc tctggtgcgg gaatttgccg tactctatcc gtctggcccg      1320
     aaccatcttc attccgaaga aggcgacggc aaatcaaccg caagactatc gtcctatttc      1380
     agtcccctcg gttatagtta ggcaactaaa tgccattttg gcttcccggt tgagcgcagc      1440
     catcaactgg gacacgcgtc agcgagggtt cctacctacc gatgggtgtg ctgataatac      1500
     gacgattgtt gatttagttt tgagggaaca tcataagcga tttaaatcgt gctacatcgg      1560
     gaccctcgat gttagtaagg cctttgatgc tgtagctcac gaagcggtct acaacacatt      1620
     ggcttcatat ggtgccccga aaggcttcat caactactta cggaaggcgt acgagggcgg      1680
     cggcacaatg ctcgctggga acgggtgggt ttcagaggcg ttcattcctg cccgaggagt      1740
     gaagcagggt gaccctctgt ctcccatact attcaacttg gtcattgacc ggttgcttag      1800
     gtccttaccc agtgagattg gtgccaaagt cggaaatgcc atgacaaacg cagcagcatt      1860
     cgcagatgat atagtccttt ttgcggaaac tccgatgggg cttcagaaat tgttggacac      1920
     caccgtttgt ttcctttcct cggtgggtct cacccttaat actgataaat gtttcacggt      1980
     cagtattaag gggcaagcca aacaaaagtg taccgtcgtc gaacggcgaa gcttcttgat      2040
     tggcgggcgc gagtgtcctt cattgaagcg tactgacgag tggaagtact tagggattaa      2100
     attcactgcg gaggggcggg cccggtacga tccagcagag gacctcggtc caaagctgtt      2160
     gagattgact cgggcccccc tgaaaccaca acagaagtta tttgcccttc ggaccgtcct      2220
     tatcccacaa ctctatcaca agctgaccct tgggagtgtg acgataggcg ttctgaagaa      2280
     atttgacaaa ttagttcgat ataccgcacg gaagtggttg gggcttccgg tggacgtacc      2340
     agtttctttt ttccatgccc cccacaagag tgggggtctc gggttaccat ctctaagatg      2400
     gacagcacca atgcttcgac taaagcgatt gagcaacata aaatggcctc acctcgagcg      2460
     atccgaggta gccagctctt tcgtggagga agaaatgcgg agggcccggg ataggcttca      2520
     ggctggaagt gaagaactgt taacccgttc gcaggtagat tcgtacttgg caaatagatt      2580
     gcacatgtct gttgatggtt gcgggctccg tgaagcagag cgttttgctc cgcaacacgg      2640
     gtgggttagt cagcccacgc gtttgctaac aggaaaggaa tatactgatg gaatcaaact      2700
     gcggataaat gccctaccct caaggtctcg tactacgagg ggaaggcacg aattggagag      2760
     acggtgccgt gcaggatgtg atgctcccga aacaacaaat cacatcttgc agcaatgcta      2820
     tagaactcac gggaggagga tagctcggca caacggcgta gtaaattttc tcaagcgggg      2880
     acttgagcga agaggctgcg tcgttcatgt tgaaccaagt ctgcagggcg aaaccggact      2940
     gaataaacct gacctggtgg ctatccgaca aaatcgcatt tatgtgattg acactcagat      3000
     tgtgactgac ggacattctc tcgaccaagc gcaccagcgt aaggtcggga agtacgatac      3060
     accggacata cggacgaatt tgcggagatc tttcggtgcc tttgacattg agttccattc      3120
     cgccactgtg aactggaggg gaatatggag tggtcaatca gtaaaacggt tgatcgcttc      3180
     agacctcctc agctctggtg atagcaatat catcagtgtc cgggtaatca gtggtggtct      3240
     ctggagctgg cggcagttca tgtatctgtc ggggtacact cgcgattgga cttagccaat      3300
     gcacgggttc cagattaagc ttgctgccga agcataccat caaaatcggc ataaaattcg      3360
     cttaataaag gaggtggttt tagtacgtag gcgtcccggg acttgtctcg ggatgaatcg      3420
     tgcatgcgta taattgggat cgataacaaa taccaactaa gttattacta atatatcgaa      3480
     atacataaat atcccgtcct tacgtatctt tgaagatttc catcctcagc gaacaaaaaa      3540
     aaaaaaaa                                                               3548
//
ID   R2_DM       repbase;    DNA;    INV; 3607 BP.
XX
AC   X51967;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   28-DEC-2011 (Rel. 16.12, Last updated, Version 2)
XX
DE   LINE-like retrotransposable element R2DM.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; protease; integrase; retrotransposon; LINE;
KW   R2_DM.
XX
NM   R2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3607
RA   Eickbush H.T.;
RT   "R2_DM.";
RL   Direct Submission to Genbank (20-FEB-1990)Eickbush T.H.,
RL   University of Rochester, Dept of Biology, Rochester NY 14627, U S
RL   A.
XX
RN   [2]
RP   1-3607
RA   Jakubczak L.J., Xiong Y. and Eickbush H.T.;
RT   "Type I (R1) and Type II (R2) Ribosomal DNA Insertions of
RT   Drosophila melanogaster are Retrotransposable Elements Closely
RT   Related to those of Bombyx mori.";
RL   J. Mol. Biol 211, 37-52 (1990).
XX
DR   GenBank; X51967; Positions       1    3607.
XX
CC   R2_DM is a LINE-like retrotransposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           286..3351
FT                 /product="R2_DM_1p"
FT                 /translation="MTTRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNS
FT                 KRGLGVHMRSRHPDELDEERRRVDIKARWSDEEKWMMARKEVELTANGCKH
FT                 INKQLAVYFANRSVEAIKKLRQRGDYKEKIEQIRGQSALAPEVANLTIRRR
FT                 PSRSEQDHQVTTSETTPITPFEQSNREILRTLRGYSPVECHSKWRAQELQT
FT                 IIDRAHLEGKETTLQCLSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQQ
FT                 YAVVQRNWDKHKGRCIKSLLNGTDESVMPSQEIMVPYWREVMTQPSPSSCS
FT                 GEVIQMDHSLERVWSAITEQDLRASRVSLSSSPGPDGITPKSAREVPSGIM
FT                 LRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLN
FT                 AILATRLNSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIAN
FT                 LDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSE
FT                 EFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADD
FT                 LVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLE
FT                 AQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKA
FT                 PLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLP
FT                 LDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNIKWPHLTQNEVASSF
FT                 LEAEKQRARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYGPQ
FT                 HGWVSQPTRLLTGKEYMDGIRLRINALPTKSRTTRGRHELERQCRAGCDAP
FT                 ETTNHIMQKCYRSHGRRVARHNCVVNRIKRGLEERGCVVIVEPSLQCESGL
FT                 NKPDLVALRQNHIDVIDTQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRF
FT                 EAAGDIEFHSATLNWRGIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLG
FT                 CFKQFMYLSGFSRDWT"
XX
SQ   Sequence 3607 BP; 1064 A; 818 C; 900 G; 825 T; 0 other;
     ttggggatca tggggtattt gagagcagag ggggagtatt cttctgtaat tcgtaagtca        60
     tatcatatga tgtgcggaag gggaatttta ctctgtaact cacaagtctc tcctttactc       120
     aagtcgactc aaaacctcct cgtggtggtc ccggtaatgc taaactcgtt tagcagctaa       180
     tttgagcgga aaaacttttc cgatgggctg gttccccaga ggaaatttat tcatattgga       240
     actacaagca caaataacga gcctcggata cctttacaca atctgatgac gacccgaccc       300
     tccgtggata tcttcccgga ggaccaatat gaaccaaacg cagcggctac tctatctagg       360
     gttccctgca cagtatgtgg ccggtccttt aacagcaaga gaggactcgg tgttcacatg       420
     cgatctcggc acccagacga acttgatgaa gaacgtcgac gtgtcgatat aaaggcaaga       480
     tggagtgatg aagagaagtg gatgatggcg agaaaggagg ttgagctcac agcaaatgga       540
     tgtaaacaca taaacaagca actagcggtg tattttgcaa accgcagcgt cgaagccatc       600
     aaaaagctaa gacagagggg cgattataag gagaaaatag agcagataag agggcaatca       660
     gctctcgccc cggaagttgc taatctaacc ataaggcgcc gccctagtag aagtgagcaa       720
     gaccaccaag taacaacatc ggaaacaact ccaatcactc ccttcgaaca gtcgaacagg       780
     gaaattttgc ggacactacg cgggtatagc cccgtagaat gccattccaa atggagagcc       840
     caagagttgc aaactatcat tgatagggca catctcgagg gaaaggaaac cactctccaa       900
     tgcttatcgc tatatctcct gggaattttt ccggcacagg gtgtacgaca cacactgacg       960
     agacctcctc ggagacctcg gaacaggaga gaaagcagaa ggcagcagta cgctgtcgtc      1020
     cagcgtaact gggataagca taaaggaaga tgcatcaagt ccttgctaaa tggaactgat      1080
     gagtcggtaa tgccaagcca agaaataatg gttccctact ggagagaagt aatgactcag      1140
     cctagcccaa gctcttgcag tggagaagtg atacaaatgg atcactcgct tgagagggta      1200
     tggtctgcta ttacagagca ggaccttcgg gcgtcaagag tctcattatc ctcgtctccg      1260
     gggcctgacg ggataactcc aaaatctgcc agggaggtgc cgtcaggtat tatgctgcgc      1320
     ataatgaacc taattctatg gtgcggtaat ctaccacact ccatacgact ggccagaacc      1380
     gtcttcatcc cgaagacggt gacggcgaag cgaccgcaag actttcgtcc aatatcagtg      1440
     ccttcagtcc tggtaagaca gctaaatgca atattggcaa cccggttgaa ctcatcaatc      1500
     aattgggacc cgcgccagcg gggcttctta ccaaccgacg gatgcgccga taatgcgacg      1560
     atagtcgact tagtcttgag gcatagccat aagcacttta gatcttgcta catcgcaaat      1620
     ttagatgtaa gcaaggcatt tgattctcta tcacatgcat ctatatacga caccttacgt      1680
     gcttatggtg cgccaaaggg cttcgttgac tacgtacaga acacgtacga gggcggtggt      1740
     accagtctca atggggacgg ttggagttca gaggaattcg tccctgctag aggagtgaag      1800
     cagggtgacc ctttgtctcc tattctattt aacttggtaa tggacaggtt acttagaacc      1860
     ttacccagcg aaattggtgc caaagtcgga aatgccatta ctaacgcggc cgcgtttgca      1920
     gatgatttgg tactatttgc ggaaactcgg atggggcttc aagtattgtt ggacaagacg      1980
     ttggattttc tatctatcgt cggcctcaaa cttaatgccg acaaatgttt taccgttggc      2040
     attaagggcc agccgaaaca gaagtgtacc gtgttagagg cacagagctt ctacgtaggc      2100
     tcgagtgaga ttccatcact gaagcgcacg gacgagtgga agtacttagg catcaacttc      2160
     actgcaaccg ggagggttcg atgcaatccg gccgaggaca ttggtccaaa gctacaaaga      2220
     ttgacaaagg cccccctcaa accacaacag aggttgttcg cccttcggac tgtccttatc      2280
     ccacagctct accacaagtt agcccttggg agtgtggcga taggcgtcct aagaaaaact      2340
     gataaactta taagatatta tgtgcgaaga tggctaaatc ttccgctgga tgtgccgata      2400
     gcatttgttc atgcaccccc aaaaagtgga ggtctcggaa ttccatcact aagatgggta      2460
     gctccaatgt taaggctaag acgcttgagt aacattaaat ggcctcacct cacgcaaaac      2520
     gaggtagcca gctctttcct cgaagccgaa aaacaacggg cccgagatag attattagct      2580
     gaacaaaatg aactgttatc gcgtccggca atagaaaaat attgggcgaa caagttgtac      2640
     ctctcagttg atggtagcgg actccgtgaa ggcggccatt atggcccgca acacgggtgg      2700
     gttagtcaac ccacgcgttt attaacagga aaggaatata tggacggtat tcgtctgcgg      2760
     ataaatgccc tacccacaaa gtctcgtact acaaggggaa ggcacgaatt ggaacgacag      2820
     tgtcgtgcag gatgtgatgc tcccgaaaca acaaaccaca taatgcaaaa atgctaccgc      2880
     tcgcatggga ggcgggtagc tagacacaac tgcgtagtaa atcgaatcaa gcggggactt      2940
     gaggagagag gctgcgtggt cattgttgaa ccaagtctgc agtgcgaatc cggccttaat      3000
     aaaccagacc tggtggcact acgacaaaat cacattgatg tgatcgacac acaaattgtg      3060
     acagacggac actctatgga tgatgcgcac cagcgcaaaa tcaatagata cgacagaccg      3120
     gacatacgaa ctgaattgcg tcgcagattc gaagccgcag gtgacattga attccattct      3180
     gccaccctga actggagggg gatctggagt ggtcaatccg ttaaaagatt gatagcaaag      3240
     ggtctcctca gcaaatatga tagtcatatc attagcgtcc aggttatgag aggcagtctc      3300
     ggttgtttta aacagttcat gtacctgagc gggttttccc gagattggac ttagctaaat      3360
     cgtttggttc aaaacatttg cttgctgtct tggcataaca tcaataaagg cataaacatc      3420
     gcaaaataat ggttataatt aaatggctat gaggatggtt ttagtacgta ggcgttgcgg      3480
     aacttcggtt catatagagc aatgaatcgt gcatgctagg aaaactgacc acacacagtg      3540
     ttggcagacc tagtatcttt cgaagatttc catacctccg cgatcaaaaa aaaaaaaaaa      3600
     aaaaaaa                                                                3607
//
ID   R2_DPe      repbase;    DNA;    INV; 3533 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 17.07, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   persimilis.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DPe.
XX
NM   R2_DPe.
XX
OS   Drosophila persimilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3533
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [2] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..3330
FT                 /product="R2_DPe_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="SSFGLIVTNLNSETVLWGCQPLGQFSLIGTNMQNTTP
FT                 RIINTNSLTNQIPTVSSLGAQSEHSAQVNPNSGYQCTICESSFRSKSGLGV
FT                 HMSRRHKDEFDQLRLRTDRKAQWSEEELSMMARKEIELAANGERYLNKKLA
FT                 EVFTNRSVDAIKKCRQRERYKTKIEQLKGQAVPLPEALESETIQRRPSIRE
FT                 RDLLVTPPNTLGTTPTELSNSEILAVLQGYPPVVCNDQWRVEVLQSIVDGA
FT                 QASGKEITLQRLSTYLMEVFPSQNDRPIQTRPPRRPRNRRQGRRQQYALTQ
FT                 RNWDKHKGRCIKAILDGTEGTATMPSQGIMGSYWRQVMTQTSPTYSGTNTT
FT                 FRTEHPLEGVWSPITLGDLRVHRVSLTKSPGPDGITPRTVRSIPSGVMLRI
FT                 MNLILWCGKLPVSIRQARTIFIPKVGNASRPQDFRPITVQSVMVRILNAIL
FT                 ASRLTSSVDWDPRQRGFLPTDGCADNTTIVDLILRDHHKRCKSLYIATLDI
FT                 SKAFDSVSHAAVSATLTAYGAPKEFVDYVQNSYEVCGTTLNGDGWRSEEFI
FT                 PARGVRQGDPLSPIIFNLIIDQLLRSYPNEIGATIGDHTTNAAAFADDIVL
FT                 FAETRLGLQTMLDTTVDFLSSVGLTLNSDKCFTVGIKGQPKQKCTVVIPET
FT                 FRIGSRSCPALKRTDEWKYLGITFTAQGRTRYSPADDLGPKLLRLTRSPLK
FT                 PQQKLFALRTVLIPQLYHKLTLGSVMIGVLRKCDILVRSTVRKWLGLPLDV
FT                 STAFFHAPHTYGGLGIPSVRWVAPMLRMKRLSNIKWAHLAQSEAASSFLTD
FT                 ELNKARGRTLAGLNELTSRTEIETYWANRLYMSVDGRGLREAGLFRPQHGW
FT                 VCQPTRLLTGQDYRNSIKLRINALPSRSRTTRGRNELERQCRAGCDAPETT
FT                 NHILQNCYRTHGRRVARHNCVVNNLKRILEEKGHTVHVEPSLQLETSVSKP
FT                 DLVCIRDNHACVIDAQIITDGLFLDDVHHRKVEKYKRPEVISALRREFGVS
FT                 GNVEVLSATLNWRGIWSNQSVRRLIAKGLISSGDSNVISARVVTGGLYCFR
FT                 QFMYLAGYTRDWT"
XX
SQ   Sequence 3533 BP; 1007 A; 805 C; 870 G; 851 T; 0 other;
     aagatatgga tctgaataat agcgtagaag gggagtcatt ccgtaattcg taaatcgtaa        60
     aaatcagatc aagttgattc aagacctcct cgtggtatct tctggatgct attagactga       120
     agttcttttg gtctaatagt aactaacttg aacagcgaaa cagtcctatg gggttgccag       180
     ccccttggac agttcagttt gattggcact aatatgcaaa atacaacgcc tcggataata       240
     aacactaatt cgttgacgaa ccaaatccct acggtctcta gcctaggggc ccaatctgaa       300
     catagtgcac aggttaaccc aaacagtggt taccaatgca cgatatgtga atcgtctttc       360
     cgtagcaaaa gcggactagg cgttcacatg tcacgtcggc acaaggacga gtttgatcaa       420
     cttcgtctgc gtaccgaccg taaggcacaa tggagtgagg aagagttgag tatgatggca       480
     agaaaagaga tcgagctcgc agcaaatgga gaaagatatc taaataagaa gctagcggaa       540
     gtatttacga accgtagcgt cgacgctatc aagaaatgtc gacagaggga gagatataag       600
     accaaaatcg aacagctaaa gggtcaagct gttcctctcc cagaagcatt agaatctgaa       660
     accatacagc gccgccctag tatacgcgag cgagatctcc tagtaacgcc acctaacact       720
     ctcggaacca ctccaaccga actgtcgaac agtgaaatcc tggcagtact acaggggtac       780
     ccacctgtag tatgcaatga ccaatggaga gttgaggttt tgcaatccat cgtagatggt       840
     gcgcaggcct cgggtaagga aattactctt cagcgcttgt ctacttacct tatggaagta       900
     tttccctcac agaatgaccg ccccattcaa acgagacctc cacggagacc tcgtaatagg       960
     agacaaggta ggagacagca gtacgcctta acacagcgta actgggacaa gcacaaaggt      1020
     cgttgtataa aagccatttt ggatggaact gaggggacag caactatgcc aagtcaaggt      1080
     atcatggggt cctattggag acaagtcatg acacaaacaa gcccaacata tagtggtacg      1140
     aacaccacgt tccggacgga acacccactt gaaggggttt ggtccccgat aacactaggg      1200
     gacctaaggg tacacagagt gtcattgacg aaatctccag gacctgatgg aattactcca      1260
     agaactgtca ggagtattcc gtcaggagtt atgcttcgca taatgaacct gatactttgg      1320
     tgcggaaagt tgcctgtctc catccgacag gcacgaacca tcttcattcc gaaggtgggg      1380
     aatgcttctc gaccgcaaga ctttcgtcca attacggtac aatctgttat ggtaaggatt      1440
     ttaaatgcca ttttggcttc ccggttgacc tcatcagtcg actgggatcc gcgtcagcga      1500
     ggtttccttc caaccgacgg atgtgccgat aatacgacga tagtcgactt aatcttaagg      1560
     gatcaccata aacgttgtaa atcactttat atcgcaactt tagatataag caaagcattt      1620
     gactcggtgt ctcatgcagc agttagcgcc actctaactg catatggtgc ccctaaagaa      1680
     ttcgttgact acgtacaaaa ttcgtacgag gtctgtggca caacgctcaa tggggacgga      1740
     tggagatcag aggaattcat acctgctcga ggtgtcagac agggtgaccc gctatctccc      1800
     ataatattca acttgatcat cgatcagttg cttaggtcct accccaatga gattggtgcc      1860
     acaatcggtg atcacacaac aaacgcggcc gcgttcgcag atgatattgt cttatttgcg      1920
     gaaactcgtt taggccttca aacaatgcta gacacgactg tcgattttct atcttcagtc      1980
     gggcttaccc ttaactcgga taaatgtttt acagttggaa taaaggggca accgaaacag      2040
     aagtgtactg tggtcatccc agagaccttc cgtatcggtt cgcgctcgtg tcctgcattg      2100
     aagcgcacag acgagtggaa gtatttaggc ataacattca ctgcacaagg gaggaccagg      2160
     tacagtccag ccgacgacct aggtccgaag ctgttgaggc tgacaaggtc ccccctaaaa      2220
     ccacaacaga aattgttcgc actcagaaca gttcttatcc cacaacttta ccataagctg      2280
     accctaggta gtgtgatgat aggtgttctg agaaagtgtg acatactggt acgttcgacc      2340
     gtaaggaagt ggttagggct tcctctggac gtgtcaactg cattcttcca tgctcctcat      2400
     acttatgggg gcctcggaat cccttcagtt cgttgggtag cgccaatgct acgtatgaaa      2460
     agattgagca atattaagtg ggcccacctc gcgcaatccg aggcggccag ctcatttctt      2520
     accgacgaat tgaataaggc ccggggtaga actctggctg gactgaatga gttgacatcg      2580
     cgtacagaga tcgaaacgta ctgggcgaac aggttgtata tgtctgttga tggtcgcggc      2640
     ttacgtgaag cgggactttt tcgtccccaa cacggctggg tgtgtcagcc cacgcgtttg      2700
     ctaacaggtc aagattaccg aaacagtatc aagctgcgaa taaatgccct accatcgagg      2760
     tctcgtacca cgaggggcag aaatgaattg gaacggcaat gtcgtgcagg ttgtgatgct      2820
     cccgaaacaa caaaccacat cctgcagaat tgttaccgta cgcatgggag gcgggtagca      2880
     agacataact gtgtagtcaa taaccttaag aggattcttg aggagaaggg ccacacagta      2940
     cacgtcgaac caagtttgca gctggaaacc tcggtaagta aaccagacct ggtgtgtatc      3000
     cgtgacaatc acgcttgcgt gattgatgcg cagattataa cggatggact gtttctcgac      3060
     gatgtgcacc atcgcaaagt tgagaaatat aaaagaccgg aagttatatc tgcactgcgg      3120
     agagaattcg gagtgtcggg caacgtcgaa gtcctatccg cgacgttaaa ctggcgtggg      3180
     atctggagca atcaatccgt tagaagattg atagcaaagg gtctcatctc atccggtgac      3240
     agcaatgtca ttagcgccag agtggtaaca ggcggactat attgcttcag acagttcatg      3300
     tatctcgcag gttacactcg agattggact tagcctatac actatgttgg agagaagacg      3360
     cttgctacct aggcaaaatg tgaaattagg tataaacatc gtggttgtaa aacttgaggt      3420
     gggtttttag tacgtatgcg tgattacttc gtaatcatga atcgtgcatg ctagtggggt      3480
     ttggcctcca ctagtatctt tgaagatttt ccttcctcag cgatcaaaaa aaa             3533
//
ID   R2_DPs      repbase;    DNA;    INV; 3557 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   pseudoobscura.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DPs.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3557
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           129..3338
FT                 /product="R2_DPs_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="SSFGLIVTNLNSETVLWGCQPLGQFSLIGTNMQNTTP
FT                 RIINTNSLTNQIPTVSSLGAQSEHSAQVNPNSGYQCTICESSFRSKSGLGV
FT                 HMSRRHKDEFDQLRLRTDRKAQWSEEELSMMARKEIELAANGERYLNKKLA
FT                 EVFTNRSVDAIKKCRQRERYKTKIEQLKGQAVPLPEALESETIQRRPSIRE
FT                 RDLLVTPPNTLGTTPTELSNREILAVLQGYPPVVCNDQWRVEVLQSIVDGA
FT                 QASGKEITLQRLSTYLMEVFPSQNDRPIQTRPPRRPRNRRQGRRQQYALTQ
FT                 RNWDKHKGRCIKAILDGTEGTATMPSQGIMGSYWRQVMTQTSPTYSGTNTT
FT                 FRTEHPLEGVWSPITLGDLRVHRVSLTKSPGPDGITPRTVRSIPSGVMLRI
FT                 MNLILWCGKLPVSIRQARTIFIPKVGNASRPQDFRPITVQSVMVRILNAIL
FT                 ASRLTSSVDWDPRQRGFLPTDGCADNTTIVDLILRDHHKRCKSLYIATLDI
FT                 SKAFDSVSHAAVSATLTAYGAPKEFVDYVQNSYEVCGTTLNGDGWRSEEFI
FT                 PARGVRQGDPLSPIIFNLIIDQLLRSYPNEIGATIGDHTTNAAAFADDIVL
FT                 FAETRLGLQTMLDTTVDFLSSVGLTLNSDKCFTVGIKGQPKQKCTVVIPET
FT                 FRIGSRSCPALKRTDEWKYLGITFTAQGRTRYSPADDLGPKLLRLTRSPLK
FT                 PQQKLFALRTVLIPQLYHKLTLGSVMIGVLRKCDILVRSTVRKWLGLPLDV
FT                 STAFFHAPHIYGGLGIPSVRWVAPMLRMKRLSNIKWAHLAQSEAASSFLTD
FT                 ELNKARGRTLAGLNELTSRSEIETYWANRLYMSVDGRGLREAGLFRPQHGW
FT                 VCQPTRLLTGQDYRNGIKLRINALPSRSRTTRGRNELERQCRAGCDAPETT
FT                 NHILQNCYRTHGRRVARHNCVVNNLKRILEEKGHTVHVEPSLQLETSVSKP
FT                 DLVCIRDNHACVIDAQIITDGLFLDDVHHRKVEKYKRPEVISALRREFGVS
FT                 GNVEVLSATLNWRGIWSNQSVRRLIAKGLISSGDSNVISARVVTGGLYCFR
FT                 QFMYLAGYTRDWT"
XX
SQ   Sequence 3557 BP; 1019 A; 806 C; 878 G; 854 T; 0 other;
     caattggaaa gatatgggtc tgaataatag cgtagaaggg gagtcattcc gtaattcgta        60
     aatcgtaaaa atcagatcaa gttgattcaa gacctcctcg tggtatcttc tggatgctat       120
     tagactgaag ttcttttggt ctaatagtaa ctaacttgaa cagcgaaaca gtcctatggg       180
     gctgccagcc ccttggacag ttcagtttga ttggcactaa tatgcaaaat acaacgcctc       240
     ggataataaa cactaattcg ttgacgaacc aaatccctac ggtctctagc ctaggggccc       300
     aatctgaaca tagtgcacag gttaacccaa acagtggtta ccaatgcacg atatgtgaat       360
     cgtctttccg tagcaaaagc ggactaggcg ttcacatgtc acgtcggcac aaggacgagt       420
     ttgatcaact tcgtctgcgt accgaccgta aggcacaatg gagtgaggaa gagttgagta       480
     tgatggcaag aaaagagatc gagctcgcag caaatggaga aagatatcta aataagaagc       540
     tagcggaagt atttacgaac cgtagcgtcg acgctatcaa gaaatgtcga cagagggaga       600
     gatataagac caaaatcgaa cagctaaagg gtcaagctgt tcctctccca gaagcattag       660
     aatctgaaac catacagcgc cgccctagta tacgcgagcg agatctccta gtaacgccac       720
     ctaacactct cggaaccact ccaaccgaac tgtcgaacag ggaaatcctg gcagtactac       780
     aggggtaccc acctgtagta tgcaatgacc aatggagagt tgaggttttg caatccatcg       840
     tagatggtgc gcaggcctcg ggtaaggaaa ttactcttca gcgcttgtct acttacctta       900
     tggaagtatt tccctcacag aatgaccgcc ccattcaaac gagacctcca cggagacctc       960
     gtaataggag acaaggtagg agacagcagt acgccttaac acagcgtaac tgggacaagc      1020
     acaaaggtcg ttgtataaaa gccattttgg atggaactga ggggacagca actatgccaa      1080
     gtcaaggtat catggggtcc tattggagac aagtcatgac acaaacaagc ccaacatata      1140
     gtggtacgaa caccacgttc cggacggaac acccacttga aggggtttgg tccccgataa      1200
     cactagggga cctaagggta cacagagtgt cattgacgaa atctccagga cctgatggga      1260
     ttactccaag aactgtcagg agtattccgt caggagttat gcttcgcata atgaacctga      1320
     tactttggtg cggaaagttg cctgtctcca tccgacaggc acgaaccatc ttcattccga      1380
     aggtggggaa tgcttctcga ccgcaagact ttcgtccaat tacggtacaa tctgttatgg      1440
     taaggatttt aaatgccatt ttggcttccc ggttgacctc atcagtcgac tgggatccgc      1500
     gtcagcgagg tttccttcca accgacggat gtgccgataa tacgacgata gtcgacttaa      1560
     tcttaaggga tcaccataaa cgttgtaaat cactttatat cgcaacttta gatataagca      1620
     aagcatttga ctcggtgtct catgcagcag ttagcgccac tctaactgca tatggtgccc      1680
     ctaaagaatt cgttgactac gtacaaaatt cgtacgaggt ctgtggcaca acgctcaatg      1740
     gggacggatg gagatcagag gaattcatac ctgctcgagg tgtcagacag ggtgacccgc      1800
     tatctcccat aatattcaac ttgatcatcg atcagttgct taggtcctac cccaatgaga      1860
     ttggtgccac aatcggtgat cacacaacaa acgcggccgc gttcgcagat gatattgtct      1920
     tatttgcgga aactcgttta ggccttcaaa caatgctaga cacgactgtc gattttctat      1980
     cttcagtcgg gcttaccctt aactcggata aatgttttac agttggaata aaggggcaac      2040
     cgaaacagaa gtgtactgtg gtcatcccag agaccttccg tatcggttcg cgctcgtgtc      2100
     ctgcattgaa gcgcacagac gagtggaagt atttaggcat aacattcact gcacaaggga      2160
     ggaccaggta cagtccagcc gacgacctag gtccgaagct gttgaggctg acaaggtccc      2220
     ccctaaaacc acaacagaaa ttgttcgcac tcagaacagt tcttatccca caactttacc      2280
     ataagctgac cctaggtagt gtgatgatag gtgttctgag gaagtgtgac atactggtac      2340
     gttcgaccgt aaggaagtgg ttagggcttc ctctggacgt gtcaactgca ttcttccatg      2400
     ctcctcatat ttatgggggc ctcggaatcc cttcagttcg ttgggtagcg ccaatgctac      2460
     gtatgaaaag attgagcaat attaagtggg cccacctcgc gcaatccgag gcggccagct      2520
     catttcttac cgacgaattg aataaggccc ggggtagaac tctggctgga ctgaatgagt      2580
     tgacatcgcg ttcggagatc gaaacgtact gggcgaacag gttgtatatg tctgttgatg      2640
     gtcgcggctt acgtgaagcg ggactttttc gtccccaaca cggctgggtg tgtcagccca      2700
     cgcgtttgct aacaggtcaa gattaccgaa acggtatcaa gctgcgaata aatgccctac      2760
     catcgaggtc tcgtaccacg aggggcagaa atgaattgga acggcaatgt cgtgcaggtt      2820
     gtgatgctcc cgaaacaaca aaccacatcc tgcagaattg ttaccgtacg catgggaggc      2880
     gggtagcaag acataactgt gtagtcaata accttaagag gattcttgag gagaagggcc      2940
     acacagtaca cgtcgaacca agtttgcagc tggaaacctc ggtaagtaaa ccagacctgg      3000
     tgtgtatccg tgacaatcac gcttgcgtga ttgatgcgca gattataacg gatggactgt      3060
     ttctcgacga tgtgcaccat cgcaaagttg agaaatataa aagaccggaa gttatatctg      3120
     cactgcggag agaattcgga gtgtcgggca acgtcgaagt cctatccgcg acgttaaact      3180
     ggcgtgggat ctggagcaat caatccgtta gaagattgat agcaaagggt ctcatctcat      3240
     ccggtgacag caatgtcatt agcgccagag tggtaacagg cggactatat tgcttcagac      3300
     agttcatgta tctcgcaggt tacactcgag attggactta gcctatacac tatgttggag      3360
     agaagacgct tgctacctag gcataatgtg aaattaggta taaacatcgt ggttgtaaaa      3420
     cttgaggtgg gtttttagta cgtatgcgtg attacttcgt aatcatgaat cgtgcatgct      3480
     agtggggttt ggcctccact agtatctttg aagattttcc ttcctcagcg atcaaaaaaa      3540
     aaaaaaaaaa aaaaaaa                                                     3557
//
ID   R2_DSe      repbase;    DNA;    INV; 3595 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   sechellia.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DSe.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3595
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           178..3348
FT                 /product="R2_DSe_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FERQNFSDGLVPQRKFIHIGTTNRNNEPRSNLRNLMT
FT                 TRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNSKRGLGVHMRSRHPDEL
FT                 DEERRRVDIKARWSEEEKWMMARKEVELTANGHKHINKQLAVYFANRSVEA
FT                 IKKLRQRGDYKEKIEQIRRQSALVPEVANLTIRRRPSRSEQNHQVTTSETT
FT                 PITPFEQSNREILRTLRGYSPVECHSKWRAQELQTIIDRAELEGKETTLQC
FT                 LSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQQYAVVQRNWDKHKGRCI
FT                 KSLLNGTDESVMPSQEVMVPYWREVMTQPSPSSCSREVIQMDHSLERVWSA
FT                 ITEHDLRASRISLSSSPGPDGITPKTAREVPSGIMLRIMNLILWCGNLPHS
FT                 IRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSINWDPR
FT                 QRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIY
FT                 DTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSP
FT                 ILFNLVMDRLLRNLPSEIGARVGNAITNAAAFADDLVLFAETRMGLQVLLD
FT                 RTLDFLSLVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSREIPSLKR
FT                 TDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRMFALRTVLI
FT                 PQLYHKLALGSVAIGILRKTDKLIRYYVRRWLNLPLDIPIAFIHAPPKSGG
FT                 LGIPSLRWVAPMLRLRRLSNIKWPHLTQNEVASSFLEAEKQRARDRLLAEQ
FT                 NELLSRPAIEKYWANKLYLSVDGSGLREAGHWGPQHGWVNQPTRLLTGKEY
FT                 IDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKCYRSHGR
FT                 RIARHNCVVNRIKRGLEERGCVVIVEPSLQCESGLNKPDLVALRQNHIDVI
FT                 DIQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRFEAAGDIEFHSATLNWR
FT                 GIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFKQFMYLSGFSRDWT
FT                 "
XX
SQ   Sequence 3595 BP; 1079 A; 800 C; 890 G; 826 T; 0 other;
     gggatcaggg gtaattgcga gcagaggggg agtatttttc tgtaattcgt aagtcatatc        60
     atatggtgtg cggaagggga attttactct gtaactcaca agtctctcct ttactcaagt       120
     cgactcaaaa cctcctcgtg gtggtccccg gtaatgctaa acttgtttag cagctaattt       180
     gagcggcaaa acttttccga tgggttggtt ccccagagga aatttattca tattggaact       240
     acaaatagaa ataacgagcc tcggagcaat ttacgcaatc tgatgacgac ccgaccctcc       300
     gtggacatct tcccggagga ccaatatgaa ccaaacgcag cggctactct atctagggta       360
     ccctgcacag tatgtggccg gtcctttaac agcaagagag gactcggtgt tcacatgcga       420
     tctcggcacc cagacgaact tgatgaagaa cgtcgacgtg tcgatataaa ggcaagatgg       480
     agtgaggaag agaagtggat gatggcgaga aaggaggttg agctcacagc aaatggacat       540
     aaacacataa acaagcaact agcggtgtat tttgcaaacc gcagcgtcga agccatcaaa       600
     aagctaagac aaaggggcga ttataaggag aaaatagagc agataagaag gcaatcagct       660
     ctcgtcccgg aagttgcaaa tctaaccata aggcgccgcc ctagtagaag tgagcaaaac       720
     caccaagtaa caacatcaga aacaactcca atcacaccct tcgaacagtc gaacagggaa       780
     attttgcgga cactgcgtgg gtatagcccc gtagaatgcc attccaaatg gagagcccaa       840
     gagctacaaa cgatcattga cagggcagag ctcgagggaa aggaaaccac tctccaatgc       900
     ttatcgctat atctcctagg aatttttccg gcacagggtg tacgtcacac tctgacgaga       960
     cctcctcgga ggcctcgaaa taggagagaa agcagaaggc agcagtatgc tgtcgtccag      1020
     cgtaactggg ataagcataa aggaagatgc atcaagtcct tgctaaatgg aactgatgag      1080
     tcggtaatgc caagccaaga agtaatggtt ccttactgga gagaagtaat gactcagcct      1140
     agcccaagct cttgcagtag agaagtgata caaatggatc actcgcttga gagggtttgg      1200
     tctgctatta cagagcacga ccttcgggca tcaagaatct cattatcttc atctccgggg      1260
     cctgacggga taactccaaa aacagccagg gaggtgccgt caggtattat gttgcgaata      1320
     atgaacctaa ttctatggtg cggcaatcta ccacactcta tccgactggc cagaaccgtc      1380
     ttcatcccga agacggtgac ggcgaagcga ccgcaagact ttcgtccaat atcggtgcct      1440
     tcagtcctgg taagacagct aaatgcaata ttggcaaccc ggttgaactc atcaatcaat      1500
     tgggacccgc gccagcgggg cttcttacct accgacggat gtgccgataa cgcgacgata      1560
     gttgacttag tcttgaggca tagccataag cactttagat cttgctacat tgcaaattta      1620
     gatgtaagca aggcattcga ttctttatcg catgcatcta tatatgacac cttacgtgct      1680
     tatggtgcgc caaagggctt cgttgactac gtacagaata cgtacgaggg tggcggtacc      1740
     agtctcaatg gggacggttg gagttcagag gaattcgtcc ctgctagagg agtgaagcag      1800
     ggtgaccctt tgtctcctat tctatttaac ttggtaatgg acaggttact tagaaaccta      1860
     cccagcgaaa ttggtgccag agtcggaaat gccattacta acgcggccgc gtttgcagat      1920
     gatttggtac tatttgctga aactcgaatg ggacttcaag tattgttgga cagaacgttg      1980
     gattttctat ctctcgtcgg cctcaaactt aatgccgaca aatgttttac cgttggcatt      2040
     aagggccagc cgaaacagaa gtgtaccgtg ctagaggcac agagctttta cgtaggctca      2100
     agggagattc catcattgaa gcgaacggac gagtggaagt acttaggcat caacttcact      2160
     gcaaccggga gggttcgatg caatccggcc gaggacattg gtccgaagct acaaagattg      2220
     acaaaggccc ccctcaaacc acaacagagg atgttcgccc ttaggactgt ccttatccca      2280
     cagctctatc acaagttagc ccttgggagt gtggcgatag gcatcctacg aaaaactgac      2340
     aaactaatac gatactatgt gcgaagatgg ctaaatcttc cgctggatat accgatagca      2400
     ttcattcacg cacccccaaa aagtggaggt ctcggaattc catcacttag atgggtagct      2460
     ccaatgttaa ggctaagacg tttgagtaat attaaatggc ctcacctcac gcaaaacgag      2520
     gtagccagct ctttcctcga agcagaaaaa caacgggccc gagatagatt attagcagaa      2580
     caaaatgaat tgttatcgcg tccggcaata gaaaaatatt gggcgaacaa attgtacctc      2640
     tcagttgatg gtagcggact ccgtgaagca ggccattggg gcccgcaaca cgggtgggtt      2700
     aatcaaccca cgcgtttact aacaggaaag gaatatatag acggtattcg tctgcggata      2760
     aatgccctac ccacgaagtc tcgtactaca aggggaaggc acgaattgga acgacagtgt      2820
     cgtgcaggat gtgacgctcc cgaaacaaca aaccatatta tgcaaaaatg ttaccgatcg      2880
     catgggaggc gcatagctag acacaactgc gtagtaaatc gaatcaagcg gggacttgag      2940
     gagagaggct gcgtagtcat tgttgaacca agtctgcagt gcgaatccgg tcttaataaa      3000
     ccagacctgg tggcactacg acaaaatcac attgatgtga tcgacataca aattgtgaca      3060
     gacggacact ctatggatga tgcacaccag cgcaaaatca atagatacga cagaccggac      3120
     atacgaactg agttgcgtcg cagattcgaa gccgcaggtg acattgaatt ccattctgcc      3180
     accctgaact ggagggggat ctggagtggt caatccgtta aaagattgat agcgaagggt      3240
     ctcctcagca aatatgatag tcatatcatt agcgtccagg ttatgagagg cagtctcggt      3300
     tgttttaaac agttcatgta cctgagcggg ttttcccgag attggactta gctaaaacgt      3360
     ttggttcaaa acatttgctt gctgtcttgg cataacatca ataaaggcat aaacatcgca      3420
     aataatggta atatataaat tggctatgag gatggtttta gtacgtaggc gttgcggaac      3480
     ttcggttcag atagagcaat gaatcgtgca tgctaggaaa ctgaagtgtt gacagaccta      3540
     gtatctttcg atagatttcc atacctccgc gatcaaaaaa aaaaaaaaaa aaaaa           3595
//
ID   R2_DSer     repbase;    DNA;    INV; 3575 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3575
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2052-2052 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. The targets are 28S rRNA genes as
CC   other R2 families.
XX
FH   Key           Location/Qualifiers
FT   CDS           381..3329
FT                 /product="R2_DSer_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MSRLHKNEFDELRRREDVNLRWSEEEKWMMARKEFEL
FT                 AASGILRHANKQLAEFFTHRSVEAIKKIRQRGDYKAKMEQIRGQSVSTPEV
FT                 ADTRTTQRRPSNSEQEHRVPTSEAPPIIPSEQSGEIMRKLRGLRPVVCNPL
FT                 WRAEVLQSIVDRAEGLGKETTLQCLSNYLLEIFPARNAPHILTRPPRRPRN
FT                 RRQSRRQQYARVQRNWDKHKGRCIKSLLDGADESVMPNQECMEPYWREVMT
FT                 RPSPCSCGNVVFPMEHLHERVWSAITERDLRANKVPLSSSPGPDGISPKTA
FT                 RSIPTGIMLRIMNLVLWCGNLPQPSRLARTVFIPKTVTATRPQDFRPITVP
FT                 SVLVRQLNAILASRLTSSINWDSRQRGFQPTDGCADNATMVDLILRESHKS
FT                 CKSCYIATLDVSKAFDSLSHAAIINTLTAYGLPKDFIDYVQKTYEVGGTTL
FT                 NGDGWSSEVIKPARGVRQGDPLSPILFNLVMDRLLRCLPKEIGVKVGNAMT
FT                 NAAAFADDIVLFAETPMGLQKLLDKTVEFLGTVGLTLNADKCFTIGIKGQP
FT                 KQKCTVVTQHSFRIGLRECPSLKRTDEWKYLGICFTAEGRVRYNPAEDLGP
FT                 KLLRLTRAPLKPQQKLFALRTVLIPQLFHKLTLGSVTIGVLRKFDKLVRFY
FT                 IRKWLDLPGDVSVAYFHAPHNCGGLGIPSLRWLAPMLRLKRLSNIRWPNLE
FT                 QSEVVSSFLENEMQRARVRLRAGNVELLSRLEIESYWANRLHMSVDGSGLR
FT                 EAGKFHPQHGWVSQPTRLLTGKEYLNGIKLRINALPSKSRTTRGRHELDRR
FT                 CRAGCDASETTNHILQKCYRTYGRRIARHNSVVNSIKLGLERKGCVVHVEP
FT                 SLQCESGLNKPDLVALRHNRIYVIDAQVVTDGHSIDDAHQRKIERYDRQDI
FT                 RTELRRRFGEASGIEFHSATLNWRGIWSNRSVKRLIASDLLTTSDSNIISV
FT                 RVVKGGIYCFRHFMYWNGYSRRLGNGRH"
XX
SQ   Sequence 3575 BP; 1023 A; 795 C; 934 G; 823 T; 0 other;
     ggaagatgga gctctttatc agggtgtgga tccttgggag ctccggggtc tggttgtatg        60
     cagaaggggt gaaattccga aattcattag tcatgcaatc agatcaagtc gactcgaaac       120
     ctcctcgtgg tatcttccgg gtactaagca gttatctgtt tagtagcaga ttcgagcggc       180
     gaagtgttct ctggggttac cagccccttt gaacgtatcc atatggtatc aatgataata       240
     cagagcctcg gagacctaca tctgtggtaa ttagcctaga tgaccatatt ggaacaagtg       300
     ctggaaataa cccgtctact acggttacct gcacgatatg tggaaggcac tttagcagca       360
     aaatagggct aggtgtccac atgtcacgtc ttcacaaaaa cgagtttgat gaacttcgtc       420
     ggcgtgaaga cgtaaatcta agatggagtg aggaagagaa gtggatgatg gcgagaaagg       480
     agttcgaact cgcagcaagt ggtatcttaa ggcatgccaa taagcaacta gcggaatttt       540
     ttacacaccg cagcgtcgaa gctatcaaga aaattcgaca gaggggtgac tataaggcaa       600
     aaatggaaca gataagaggg caatctgttt ccaccccaga agttgcagat acaagaacca       660
     cacagcgccg ccctagtaat agcgagcaag aacaccgagt accaacatcg gaagcacctc       720
     caatcattcc atccgaacag tcgggcgaaa tcatgcggaa actacggggc ttacgccccg       780
     tagtgtgtaa tcccctatgg agagccgagg tccttcaatc tatcgtagat agggcggagg       840
     gccttgggaa ggaaaccact ctccaatgtt tgtctaacta cctcctggaa atttttccgg       900
     cacggaatgc accgcacatt ctgacgaggc ctccccggag gccccgaaat aggagacaaa       960
     gtagaaggca gcagtacgct agggttcagc gtaactggga caaacataag gggagatgca      1020
     taaaatcctt gcttgatgga gctgatgagt cggtaatgcc aaaccaagaa tgtatggaac      1080
     cctactggag agaagtgatg acacggccta gcccatgctc gtgcgggaac gtagtgtttc      1140
     ctatggaaca cttgcacgag agggtatggt ccgctattac agagcgagat ctaagggcca      1200
     ataaagtgcc attatcttca tctccgggac ctgacggaat ttctccaaaa actgccagga      1260
     gtattccaac gggtattatg cttcgcataa tgaaccttgt tctttggtgc ggcaatctac      1320
     cacaaccatc acgactggcc agaaccgttt tcattccgaa aacggtgacg gcaacacgac      1380
     cgcaagactt tcgtcccatt acagtcccct cggttctggt tcggcaacta aacgccattt      1440
     tggcatcccg gttgacttca tcaatcaact gggactcgcg acagcgaggg ttccagccta      1500
     ccgatgggtg tgctgataat gcgacgatgg tcgatttaat cttgagggaa agccataaaa      1560
     gctgtaaatc ttgctacatt gcgaccctgg atgtcagcaa ggcgtttgac tcactatctc      1620
     acgcagctat aattaacacg ttgacagcat atggcctacc gaaggatttt atcgactatg      1680
     tacagaagac gtacgaggtt ggtggcacaa cgctcaatgg ggacggatgg agttcggagg      1740
     ttatcaaacc tgcccgtgga gtgaggcagg gagatcctct ctctccgata ctatttaacc      1800
     tggtaatgga caggttactt aggtgcttac ccaaagagat tggtgtcaag gtcggaaatg      1860
     ccatgacaaa cgcggcagca ttcgcagacg atatagtgct atttgcggaa actccgatgg      1920
     gccttcaaaa attgttggac aagaccgtgg aattcttggg aacggtcgga ctcaccctga      1980
     atgctgataa gtgtttcact atcggtataa aggggcagcc taagcagaag tgtactgttg      2040
     tgacgcaaca cagctttcgc ataggtctgc gcgagtgtcc ttcattgaag cgcacggacg      2100
     agtggaagta tttaggtatc tgtttcactg cggaaggaag ggtccggtac aatccagctg      2160
     aagacctcgg tccgaagttg ttgagattga ctcgggcccc tctgaagcca caacagaagt      2220
     tgtttgccct taggactgtc ctcatcccac agctctttca caagctaacc cttgggagtg      2280
     tgacgatagg cgttctaaga aaatttgaca aattggtacg tttctatatc cggaagtggc      2340
     tagatcttcc gggggatgtg tcagtcgcct acttccacgc cccccacaat tgtgggggac      2400
     tcggaatacc gtccttgaga tggttagcac caatgctacg tttgaagaga ttgagcaaca      2460
     taagatggcc aaaccttgag caatccgagg tggtcagctc tttcttggaa aatgaaatgc      2520
     agagggcccg agttcgctta cgagcgggaa atgtagaact gctatcacgc cttgaaatag      2580
     aatcgtactg ggcaaacagg ttgcacatgt ctgttgatgg cagcggtctc cgtgaggcgg      2640
     gtaaattcca cccgcagcat ggatgggtca gtcagcccac gcgtttgcta acaggaaagg      2700
     aatatttgaa cggaatcaaa ttgcggataa atgccctacc ctcaaagtct cgtactacga      2760
     ggggaaggca cgaattggat agacggtgtc gtgcaggatg tgatgcttcc gaaacaacaa      2820
     accacatttt gcaaaaatgc tatagaacgt atggaagacg catagctaga cacaacagcg      2880
     tagtaaattc aatcaagttg gggcttgaga gaaaaggctg cgttgtccat gtcgaaccaa      2940
     gtctgcaatg cgaatccggg ttgaataaac ctgacctggt ggcactccga cataatcgca      3000
     tttatgtgat tgacgctcag gttgtgacag acggacattc gatcgacgat gcgcaccaac      3060
     gcaaaatcga aagatatgac agacaggaca tacggacgga attgcggcgt cgattcggag      3120
     aggcaagtgg cattgagttc cactccgcaa cactcaactg gagggggata tggagtaatc      3180
     ggtcggtaaa acgattgatt gcatcagatc tcctaaccac tagcgatagc aatatcatta      3240
     gtgtccgggt ggtgaaaggc ggtatttact gttttaggca ttttatgtat tggaatggct      3300
     acagtagaag actgggaaat ggaaggcact agtttcccaa ctaaaagcct gctaccttgg      3360
     cataacatca aaaaaaggta caaacatcgc aacaatgaca tcctaacaag gagggtttta      3420
     gtacgtaggc gctgtagaac tttcacacgt ggtgaggttc tgacgaagca gtgaatcgtg      3480
     catgctagac gcggtccgtg ggtgaccgac tagtatcttt cgaagatttc cccaccttag      3540
     cgatcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa                                 3575
//
ID   R2_DSi      repbase;    DNA;    INV; 3607 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   simulans.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DSi.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3607
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           161..3349
FT                 /product="R2_DSi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="TCLAANLSGKNFSDGLVTQRKFTHIGTTNTNNEPRIS
FT                 LHNLMTTRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNSKRGLGVHMRS
FT                 RHPDELDEERRRVDIKARWSEEEKWMMARKEVELTANGHKHMNKQLAVYFA
FT                 NRSVEAIKKLRQRGDYKEKIEQIRGQSALVPEVANLTIRRRPSRSEQNHQV
FT                 TTSETTPITPFEQSNREILRTLRGYSPVECHSKWRAQELQTIIDRAELEGK
FT                 ETTLQCLSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQQYAVVQRNWDK
FT                 HKGRCIKSLLNGTDESVMPSQEVMVPYWREVMTQPSPSSCSGEVIQMDHSL
FT                 ERVWSAITEHDLRASRISLSSSPGPDGITPKSAREVPSGIMLRIMNLILWC
FT                 GNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSS
FT                 INWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSL
FT                 SHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQ
FT                 GDPLSPILFNLVMDRLLRNLPSEIGAKVGNAITNAAAFADDLVLFAETRMG
FT                 LQVLLDKTLDFLSLVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSRE
FT                 IPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRMFA
FT                 LRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFIHA
FT                 PPKSGGLGIPSLRWVAPMLRLRRLSNIKWPHLTQNEVASSFLEAEKQRARD
FT                 RLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREAGHWGPQHGWVNQPTRL
FT                 LTGKEYIDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKC
FT                 YRSHGRRVARHNCVVNRIKRGLEERGCVVIVEPSLQCESGLNKPDLVALRQ
FT                 DHIDVIDIQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRFEAAGDIEFHS
FT                 ATLNWRGIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFKQFMYLSG
FT                 FSRDWT"
XX
SQ   Sequence 3607 BP; 1070 A; 807 C; 902 G; 828 T; 0 other;
     gggatctggg gtaattgcga gcagaggggg agtatttttc tgtaattcgt aagtcatatc        60
     atatggtgtg cggaagggga attttactct gtaactcaca agtctctcct ttactcaagt       120
     cgactcaaaa cctcctcgtg gtggtccccg gtaatgctaa acttgtttag cagctaattt       180
     gagcggcaaa aacttttccg atgggctggt tacccagagg aaatttactc atattggaac       240
     tacgaacaca aataacgagc ctcggatatc tttacacaat ctgatgacga cccgaccctc       300
     cgtggatatc ttcccggagg accaatatga accaaacgca gcggctactc tatctagggt       360
     tccctgcaca gtatgtggcc ggtcctttaa cagcaagaga ggactcggtg ttcacatgcg       420
     atctcggcac ccagacgaac ttgatgaaga acgtcgacgt gtcgatataa aggcaaggtg       480
     gagtgaggaa gagaagtgga tgatggcgag aaaggaggtt gagctcacag caaatggaca       540
     taaacacatg aacaagcaac tagcggtgta ttttgcaaac cgcagcgtcg aagccatcaa       600
     aaagctaaga cagaggggcg attataagga gaaaatagag cagataagag ggcaatctgc       660
     tctcgtcccg gaagttgcaa atctaaccat aaggcgccgc cctagtagaa gtgagcaaaa       720
     ccaccaagta acaacatcag aaacaactcc aatcactccc ttcgaacagt cgaacaggga       780
     aattttgcgg acactgcgtg ggtatagccc cgtagaatgc cattccaaat ggagagccca       840
     agagctacaa acgatcattg acagggcaga gctcgaggga aaggaaacca ctctccaatg       900
     cttatcgcta tatctcctgg gaatttttcc ggcacagggt gtacgacaca cgctgacgag       960
     acctcctcgg agacctcgga ataggagaga aagcagaagg cagcagtatg ctgtcgtcca      1020
     gcgtaactgg gataagcata aaggaagatg catcaagtcc ttgctaaatg gaactgatga      1080
     gtcggtaatg ccaagccaag aagtaatggt tccctactgg agagaagtaa tgactcagcc      1140
     tagcccaagc tcttgcagtg gagaagtgat acaaatggat cactcgcttg agagggtttg      1200
     gtctgctatt acggagcatg accttcgggc gtcaagaatc tcattatctt catctccggg      1260
     gcctgacggg ataactccaa aatctgccag ggaggtgccg tcaggtatta tgttgcgaat      1320
     aatgaaccta attctatggt gcggtaatct accacactct atccgactgg ccagaaccgt      1380
     cttcatcccg aaaacggtga cggcgaagcg accgcaagac tttcgtccaa tatcggtgcc      1440
     ttcagtcctg gtaagacagc taaatgccat attggcaacc cggttgaact catcaatcaa      1500
     ttgggacccg cgccagcggg gcttcttacc taccgacgga tgtgccgata atgcgacgat      1560
     agttgactta gtcttgaggc atagccataa gcactttaga tcttgctaca tagctaattt      1620
     agatgtaagc aaggcattcg attctttatc gcatgcatct atatatgaca ccttacgtgc      1680
     ttatggtgcg ccaaagggct tcgttgacta cgtacagaat acgtacgagg gtggcggtac      1740
     cagtctcaat ggggacggtt ggagttcaga ggaattcgtc cctgctagag gagtgaagca      1800
     gggtgaccct ttgtctccta ttctatttaa cttggtaatg gacaggttac ttagaaacct      1860
     acccagcgaa attggtgcca aagtcggaaa tgccattact aacgcggccg cgtttgcaga      1920
     tgatttggta ctatttgctg aaactcgaat gggacttcaa gtattgttgg acaaaacgtt      1980
     ggattttcta tctctcgtcg gcctcaaact taatgccgac aaatgtttta ccgttggcat      2040
     taagggccag ccgaaacaga agtgtaccgt gctagaggca cagagcttct acgtaggctc      2100
     gagggagatt ccatcactga agcgaacgga cgagtggaag tacttaggca tcaacttcac      2160
     tgcaactggg agggttcgat gcaatccggc cgaggacatt ggtccaaagc tacaaagatt      2220
     gacaaaggcc cccctcaaac cacaacagag gatgttcgcc cttaggactg tccttatccc      2280
     acagctctat cacaagttag cccttgggag tgtggcgata ggcgtcctac gaaaaactga      2340
     caaattaata agatattatg tgcgaagatg gctaaatctt ccgctggatg tgccgatagc      2400
     attcattcat gcacccccaa aaagtggagg tctcggaatt ccatcactaa gatgggtagc      2460
     tccaatgtta aggctaagac gattgagtaa tattaaatgg cctcacctca cgcaaaacga      2520
     ggtagccagc tctttcctcg aagccgaaaa acaacgggcc cgagatagat tattagcaga      2580
     acaaaatgaa ttgttatcgc gtccggcaat agaaaaatat tgggcgaaca aattgtacct      2640
     ctcagttgat ggcagcggac tccgtgaagc gggccattgg ggaccgcaac acgggtgggt      2700
     taatcaaccc acgcgtttac taacaggaaa ggaatatata gacggtattc gtctgcggat      2760
     aaatgcccta cccacgaagt ctcgtactac aaggggaagg cacgaattgg aacgacagtg      2820
     tcgtgcagga tgtgacgctc ccgaaacaac aaaccacata atgcaaaaat gttaccgatc      2880
     gcatgggagg cgcgtagcta gacacaactg cgtagtaaat cgaatcaagc ggggacttga      2940
     ggagagaggc tgcgtggtca ttgttgaacc aagtctgcag tgcgaatccg gccttaataa      3000
     accggacctg gtggcactac gacaagatca cattgatgtg atcgacatac aaattgtgac      3060
     agacggacac tctatggatg atgcacacca gcgcaaaatc aatagatacg acagaccgga      3120
     catacgaact gaattgcgtc gcagattcga agccgcaggt gacattgaat tccattctgc      3180
     caccctgaac tggaggggga tctggagtgg tcaatccgtt aaaagattga tagcaaaggg      3240
     tctcctcagc aaatatgata gtcatatcat tagcgtccag gttatgagag gcagtctcgg      3300
     ttgttttaaa cagttcatgt acctgagcgg gttttcccga gattggactt agctaaaacg      3360
     tttggttcaa aacatttgct tgctgtcttg gcataacatc aataaaggca taaacatcgc      3420
     aaaataatgg ttatatataa atggctatga ggatggtttt agtacgtagg cgttgcggaa      3480
     cttcggttca gatagagcaa tgaatcgtgc atgctaggaa aactgaccac acgcagtgtt      3540
     ggcagcccta gtatctttcg atagatttcc atacctccgc gatcaaaaaa aaaaaaaaaa      3600
     aaaaaaa                                                                3607
//
ID   R2_DYa      repbase;    DNA;    INV; 3548 BP.
XX
AC   .
XX
DT   08-NOV-2010 (Rel. 15.11, Created)
DT   08-NOV-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 in Drosophila
DE   yakuba.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3548
RA   Stage D.E. and Eickbush T.H.;
RT   "Origin of nascent lineages and the mechanisms used to prime
RT   second-strand DNA synthesis in the R1 and R2 retrotransposons of
RT   Drosophila.";
RL   Genome Biology 10(5), R49-R49 (2009).
XX
DR   [1] (Consensus)
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..3306
FT                 /product="R2_DYa_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FERRIFPKGLVPLTKDNHIGTTNLQNEPRIFTNDLLT
FT                 TRPSVDHVPEDQYEPNAAATLSRVPCTVCDRSFNSKRGLGVHMRSRHPDEL
FT                 DEERRRVDIKARWSEEEKWMMARKEVELMANGFKHINKQLAVYFANRSVEA
FT                 IKKLRQRGDYKEKIEQIRGQSALAPEVANLTIRRRPSRSEQDHQVPTSEAS
FT                 PITPLEQSNREILRTLRGYSPVVCPSKWRAQELQTIIDRAEFEGKETTLQC
FT                 LSLYLQGIFPVQGVRHTLTRPPRRPRNRRESRRQQYAVIQRNWDKHKGRCI
FT                 KSLLNGTDESVMPSREFMEPYWREVMTQPSPSSCNGEVIRTDHSLETVWSA
FT                 ITEQDLRASRVSLSSSPGPDGVTPKTAREVPSGIMLRIMNLILWCGNLPHS
FT                 IRLARTIFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLTSSIDWDPR
FT                 QRGFSPTDGCADNATIVDLVLRHSHKYFKSCYIANLDVSKAFDSLSHAAIY
FT                 GTLRAYGAPKGFVDYVQKTYEGGGISLNGEGWCSEEFVPARGVKQGDPLSP
FT                 ILFNLVIDRLLRALPSEIGTKVGNAMINAAAFADDLVLFAETRMGLQTLLD
FT                 KTVDFLSTVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFCVGSREIPTLKR
FT                 TDEWKYLGIHFTASGRVRCNPAEDIGPKLQRLSEAPLKPQQRLFALRTVLI
FT                 PQLYHKLSLGSVTIGVLRKTDKLIRFYVRRWLNLPSDVPIAFVHAPPKCGG
FT                 LGIPSLRWVAPMLRLRRLSNIKWPHLVQSEEASSFIEAEKQRARGRLIAEQ
FT                 NELLSRPAIEKYWANRLYLSVDGGGLREAGHYGPQHGWVSQPTRLLTGKEY
FT                 LDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKCYRSHGR
FT                 RVARHNCVVNRIKRGLEERGCVVIAEPSLQCESGLNKPDLVVLRQNHIDVI
FT                 DVQVVTDGHSMDEAHQRKINRYDRPDIRTELRRRFEAAGDIEFHSATLNWR
FT                 GIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFRQFMYLSGFSRDWT
FT                 "
XX
SQ   Sequence 3548 BP; 1005 A; 801 C; 916 G; 826 T; 0 other;
     gggaacatgg ggtaaaggtg agtagagggg gagtattttt tatactctgc aactcataag        60
     tcttgccttt actcaagtcg actcaaaacc tcctcgtggt gtttcccggt aatgttaaac       120
     ttgtttagca gctaatttga gcggcgaatc tttccgaaag ggttggttcc cctgacgaag       180
     gataatcata ttggtaccac aaatttacaa aacgagcctc ggatatttac taatgatctg       240
     ttgacgaccc gaccctccgt ggatcacgtc ccggaggacc aatatgaacc aaacgcagcg       300
     gctactctat caagggttcc ctgcacagta tgtgaccggt cctttaacag taagagagga       360
     ctcggtgttc acatgcgatc tcggcaccca gacgaacttg atgaagaacg tcgacgtgtc       420
     gatataaaag caaggtggag tgaggaagag aagtggatga tggcgagaaa ggaggtcgag       480
     ctcatggcaa atggttttaa acacataaac aagcaactag cggtgtattt tgcaaaccgt       540
     agcgtcgaag ccattaaaaa gctgagacag aggggcgatt ataaggagaa aatagagcag       600
     ataagagggc aatccgctct cgccccagaa gttgctaatc taaccataag gcgccgccct       660
     agtagaagtg agcaagacca ccaagtacca acgtcagaag catctccaat cactccgctc       720
     gaacagtcga acagggaaat tttgcggacg ctgcgtgggt atagccccgt agtatgccct       780
     tccaaatgga gagcccaaga actacaaact atcattgata gggcggaatt tgagggaaag       840
     gaaaccactc tccaatgctt atcgctctac ctccagggaa tttttccggt acagggtgta       900
     cgacacacgc tgacgaggcc tcctcggaga cctcggaata ggagggaaag cagaaggcag       960
     cagtacgctg tcatccagcg aaactgggat aagcataaag gaaggtgcat taagtccctg      1020
     cttaatggaa ctgatgaatc ggtaatgcca agccgagaat ttatggagcc ctactggaga      1080
     gaagtaatga ctcagcctag cccaagctct tgcaatggag aagtgattcg tacggatcac      1140
     tcgcttgaga cggtatggtc tgcaataacg gaacaagacc ttagggcatc aagagtttca      1200
     ttatcttcat ctccggggcc tgacggggta actccaaaaa ctgccaggga ggtgccgtca      1260
     ggtattatgc tacgcataat gaacctaatt ctatggtgcg gtaacttacc tcattctatc      1320
     cgactggcca gaaccatctt catcccgaag acggtgacgg caaagcgacc gcaagacttt      1380
     cgtccaatat cggtgccttc cgtcctggta agacagctaa atgccatctt ggcaacccga      1440
     ttgacctcat caatcgattg ggacccgcgc cagcggggct tctcaccaac cgacggttgc      1500
     gccgataatg cgacgatagt tgacttagtc ctgaggcata gccataagta ctttaaatct      1560
     tgctacatcg ccaacttaga tgttagcaag gcatttgact cattgtcaca tgcagcaata      1620
     tatgggacat tacgagctta tggtgcgccg aagggttttg ttgactatgt acagaagacg      1680
     tacgagggag gtggtatcag tctcaacggg gaaggttggt gttcagagga attcgtgcct      1740
     gctagaggag tgaagcaggg cgaccctttg tcccccattc tatttaactt ggtcatcgac      1800
     cggttactta gagccctacc tagcgagatt ggtaccaagg tcggaaatgc catgataaac      1860
     gctgctgcat ttgcagatga tttggtacta tttgcggaaa ctcggatggg acttcaaact      1920
     ttgttggaca agactgtgga ctttttatcc accgtcggcc ttaaacttaa tgctgataag      1980
     tgctttactg tcggtattaa gggacagccg aaacagaagt gtactgtgct agaggcacag      2040
     agcttctgcg taggctcgag agagattcca acactgaagc gtactgacga gtggaagtat      2100
     ctcggtatac atttcactgc aagtgggagg gttcgatgca atccggcaga ggacattggt      2160
     ccaaagctac aaagattgtc agaggccccc cttaagccac aacagaggtt gttcgccctt      2220
     cggactgtcc tgatcccaca actctatcac aagttatccc ttgggagtgt gacgataggc      2280
     gtcttacgaa agactgacaa gctaatacgt ttctatgtgc gaagatggct aaatcttccg      2340
     tcggatgtgc cgatagcatt cgttcatgcc cccccaaaat gtgggggtct cggaattcca      2400
     tcactaagat gggtagcacc aatgttacga cttagacgat tgagcaacat aaaatggccc      2460
     cacctcgtac aatccgagga agccagctcc ttcatcgaag cggaaaaaca aagggcccga      2520
     ggtagattga tagctgaaca aaatgaattg ttatcgcgtc cggcaataga aaagtattgg      2580
     gcgaacaggt tgtacctctc cgttgatggt ggcggactcc gtgaagcggg ccactatggt      2640
     ccccaacacg ggtgggttag tcagcccacg cgtttactaa caggaaagga atatttagac      2700
     ggtattcggc tgcggataaa tgccctaccc acaaagtctc gcactacgag gggaaggcac      2760
     gaattggaga ggcagtgtcg tgcaggatgt gatgctcccg aaacaacaaa ccacattatg      2820
     caaaaatgct atcgttcgca tgggaggcga gtagctagac acaactgcgt agtaaatcga      2880
     atcaagcggg gacttgagga gagaggctgc gtggtcattg ccgaaccaag tctgcagtgc      2940
     gaatccggcc ttaataaacc ggacctggtg gtactccgac aaaatcacat tgatgtgatt      3000
     gacgtgcagg ttgtgacaga cggacattct atggacgaag cgcatcagcg caaaatcaat      3060
     agatacgaca gaccggacat acgaactgaa ttgcgtcgcc gattcgaagc cgcaggtgac      3120
     atcgagtttc attctgccac cctaaactgg agggggattt ggagtggtca atccgtaaaa      3180
     cgattgattg cgaagggtct cctcagcaaa tatgatagtc atatcattag cgtccaggtt      3240
     atgagaggca gtcttggctg ttttagacag ttcatgtacc ttagcgggtt ttctcgtgat      3300
     tggacgtagc ttaaaacgtt tggttcacat acatctgcct gctgccttgg cacaatatca      3360
     aaaaggcata aacatcgcac atattggtta tttacggcta tgaggatggt tttagtacgt      3420
     aggcgttgcg gaacttcggt tcggatagag caatgaatcg tgcatgctag gaactgacca      3480
     aataacagca gccctagtat ctttcgaaga tttccatacc tttgcgatca aaaaaaaaaa      3540
     aaaaaaaa                                                               3548
//
ID   R2_FA       repbase;    DNA;    INV; 3513 BP.
XX
AC   AF015819;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Forficula auricularia retrotransposon R2, complete sequence.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_FA.
XX
OS   Forficula auricularia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dermaptera; Forficulina;
OC   Forficuloidea; Forficulidae; Forficula.
XX
RN   [1]
RP   1-3513
RA   Burke D.W., Malik S.H., Lathe C.W. and Eickbush H.T.;
RT   "Are retrotransposons long-term hitchhikers?.";
RL   Nature 392(6672), 141-142 (1998).
XX
RN   [2]
RP   1-3513
RA   Burke D.W., Malik S.H., Jones P.J. and Eickbush H.T.;
RT   "The domain structure and retrotransposition mechanism of R2
RT   elements are conserved throughout arthropods.";
RL   Mol. Biol. Evol 16(4), 502-511 (1999).
XX
RN   [3]
RP   1-3513
RA   Burke D.W. and Eickbush H.T.;
RT   "R2_FA.";
RL   Direct Submission to Genbank (24-JUL-1997)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
RN   [4]
RP   1-3513
RA   Burke D.W. and Eickbush H.T.;
RT   "R2_FA.";
RL   Direct Submission to Genbank (09-SEP-1998)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015819; Positions       1    3513.
XX
SQ   Sequence 3513 BP; 1084 A; 813 C; 761 G; 855 T; 0 other;
     tagtccaaaa gccttgtcat cttaggatga cgcgcaggtt tttgagatgt atatttttat        60
     agtagtagta aaatacgact tgttaaattc ttaagataaa gagtcatagt agcaagtgaa       120
     gaccttttcg tggttcctgt cataagtacc ctacggggaa accaacttca cccctgcgaa       180
     catggagctt agaggttacc agcctcctcg ctcgtcaatt agcttggtcc cagatcaata       240
     aaccagcctc ggataaggac ggattcaccg aatatcgtta gaccctctgg ttcaacgacg       300
     accatgcaaa gatgcaccac gtcagacttg actttctccc aatgtagatt tcctcattgt       360
     aaattcagaa gaccatctct tactggtgtc agggttcatg aacaaagatc tcacaaggcc       420
     ttttttgaca gactgcaggc tgaagtaatt cgaaatcaga cgtcaaaaaa gaaaccgaga       480
     tggaccgaag aagagaagaa cctgttagca cttgcgcagg cgaatctcat aatcgaagaa       540
     gaaactaata ttatcgatga cttggtctcc aagttcacat atagaaccaa agatgccctt       600
     aagagccaaa tcaggaaacc cgaacacaaa acccgagtca gtgagttcac tttggcaatt       660
     caagcccata tagacaatat tatgctcccc gctcccgtcc ccatagctac tgatccgttg       720
     caagtctctt gcaacttcaa ggacagagca aaagactaca tcgacacatt agagcccata       780
     acttcaacta aattctattt agacgagtta gaggctctgt gtgacaatat ttgtatatgg       840
     ccgactaggc tacttatcac aacagtggag tcttacatac gaaaattgtt taaaacaaca       900
     agtacgttga agccagcaca gaagttacat aatccttcaa acaggaatct tccaaagcgc       960
     cagctaagac gtatggagta tggtaagacg cagaagctgt ggaaaaagaa cccgtgtcgt      1020
     gccataaaaa caattattga cgataaggac tgtaagtcgc cacccgaaag ggaggcgatg      1080
     acgcaatact ggaagacaac gttttccagt aaaaagcgga catgtcccca gtatgagcct      1140
     cgcgaaagta ccaaaaccca gttgtgggaa ccggttacaa tcgaggagct tcattgctgc      1200
     caccttgaaa tgacaaccag cccagggcct gacgggatca ctgttagaca gctttacctc      1260
     gttccggagc aattgcttgt cagaatatta aatctcctaa tggcctgtgg caaaatgcct      1320
     gatagcttct tggaatccaa aaccactctg attccaaaga agcccaactc tactgaaccc      1380
     ggcgattttc gcccaatcac agttcagtca gtgttggtca ggcaactgaa taaaatccta      1440
     gccgccagag tagcgcaaca catcccacta gacgaacgtc aacggggatt tagaccagta      1500
     gacggagtcg ctcacaacat cttcgaatta gacatgatac ttaggtgtca tcgatctgaa      1560
     ttccgcgatc tccgacttgc ctccctcgac atagcgaagg cattcgactc cattacacat      1620
     aacaccattg aggataccat ggaagtaagg ggtttcccta aacccatgat taactacata      1680
     atggcttgtt atcgccgcag taaaacgaga ttcaccttta atggatggat ctcagatact      1740
     gtgaaaccca cttgtggggt taaacagggt gaccccttgt caccaatact gtttaatcta      1800
     gtaatggaca gaatgatccg gaagctaccg aaggaggtag gagtcaatgt aggcagtaag      1860
     cactataatg gtcttacatt tgccgacgac ctactgctct tcgcgactac tcctgaaggc      1920
     ttgcaatcct caattgacat tgtccacctc ttcctcctgg aatgtggact attgatcaac      1980
     aagcaaaaat cctttgtcct tacggtcaaa gcatacccaa agctcaagaa gacggcggtc      2040
     atcgtcacag agaagtatat gttagaccgt catattcttc ccgctattga tagagagaag      2100
     ctattccact atcttggcgt tccattcaca gctgaaggaa gatgtagaga cgataccata      2160
     gcccacctca aacgaaaaat cgatgtgctt acaaaagcac cgcttaagcc ccagcagaga      2220
     ctattcgcac ttagagttgt catcctccct agctgttatc acatcctaac gctaggagga      2280
     tcgaacctaa gtctgctaaa gaaaatcgat ttgatggtaa gagctgcggg taggaaatgg      2340
     tgctgcctgc caaaggacac gcccaacgca tattttcatg cgtcaagccg cgatggagga      2400
     ctaggtctgc cctccatgag atggcttatt cctctgcaca ggtatctaag acttttacga      2460
     tatgagggaa gaaacccaga agacactaat gtgtacttga cgactgaaat caatagagca      2520
     aaaattagac tctccgacaa tggctctaac attgattgtc aagccaagct ttggcaattc      2580
     tgggcggacc gattgtataa gtccgtggac ggctctgccc taatcgaatc cagtaaagta      2640
     ccacaacaac atcggtgggc tacaggtggt agcagatttt tgacgggacg ggattttatc      2700
     aactcaatta aattgagaat aaataccctg ccgacactat ctaggacgct acggggtcgt      2760
     gaaggcaacc gaatgtgcag aggtgggtgc tacaatgtag agacgttaca tcatgtccta      2820
     caggtatgtc accgaacgaa cggaacacga gttaaacgac ataacgccat caggcagtac      2880
     attgcgcggg gtgctgctgt caaatttgac acagtcgaga gagagccccg tataaagtct      2940
     gcgtctggtg cagttaacat cccggaccta gtggcttgta acagcgatga agtggttgtg      3000
     atagataccc aaatcgtctg ggaccaggcc aacctggatg aagctcacca agccaaagcg      3060
     gagaagtatg ctcacttaag tgacatactt aagcataaat atagtagaga tagggtaaag      3120
     tttacctctg taacgctctc cttcagaggc ttatggagta aacaatcgct gaaggaactg      3180
     actgacctgg gaattgtcaa ttccaaagac attcaaatca tttctaccag agctataata      3240
     ggaggtattg catcatttag gatgtttaat tcaacaacct cagtaaattc agtaaattcc      3300
     tttctagaaa tcgcattggg ataggatgat agcgcacctg gtcatcgtct ctctcagctg      3360
     ctcacttgct gttctaagtg ataataccgt tgttttttta gtgggtattc ttttacgctt      3420
     tcgtaggagc gagtcccaca ctcttggagc aatccggggt agtgcctaaa cgcatttctt      3480
     caacgtaaaa aaaaaaaaaa aaaaaaaaaa aaa                                   3513
//
ID   R2_HC       repbase;    DNA;    INV; 1565 BP.
XX
AC   AF015816;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Hippodamia convergens retrotransposon R2 reverse transcriptase
DE   gene, partial cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_HC.
XX
OS   Hippodamia convergens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini;
OC   Hippodamia.
XX
RN   [1]
RP   1-1565
RA   Burke D.W., Malik S.H. and Eickbush H.T.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons.";
RL   Unpublished.
XX
RN   [2]
RP   1-1565
RA   Burke D.W. and Eickbush H.T.;
RT   "R2_HC.";
RL   Direct Submission to Genbank (24-JUL-1997)Biology, Univ. of
RL   Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015816; Positions       1    1565.
XX
SQ   Sequence 1565 BP; 314 A; 400 C; 490 G; 361 T; 0 other;
     gcgtttgcgg acgacgtaat cctctgcggc accacttctt ggggactaca gagaaatctg        60
     gaaatcttcg aggaggagct ccgaagaagc ggactttcct taaatcctgg gaaaagtaag       120
     tgcgtttccc ttgttgcttc tggaagggaa aagaaggtta agctagtgat gaccccgaca       180
     ttcagagcgt cgggtagttg gcttagccag gtcgatggga ccaccttctg gaagtacttg       240
     ggattacagt ttaggggttg tgggatggcc ggttgtggtt cggacgatgt agctgagtgc       300
     ttggagcggc tcactcgtgc gccgttgaag cctcagcagc ggatgcactt gctgcgggtc       360
     ttccttttgc ccagatttta tcacgtctgg acatttggaa gactcaatgc gggcatcctg       420
     cgtcgtctgg acattcgtgt tcggaatgcc atccggacat cggtgcgcct accccacgac       480
     gtaccggtgg gatacttcca cgcgccgact aacgccgggg gactcggtat tccgcaattg       540
     tcgcgcttca ttccgctgtt gcgtcttaag aggtttgagc gtttggctca ctcctccgtc       600
     gaaagcgttc gggaatgcgc gaggaccgaa cctgccgtgg cgaaggtccg gtggtgtcgg       660
     gagcggttag cggacgtcgt agaccgggtc gcggatggaa cgcagagtct tcgcgaattt       720
     tggacgcgtg agctttatcg gtcgatggat gggagggcgc ttagggagtc tgtgagagag       780
     actccgagta cacagtggct ccgctgctgt acccgtgtca taccagccag agactggctc       840
     aattacatct ccgttcacat taatgcatta ccatcgcgtg ttcgaacatc acgtggcaga       900
     cgtgacggcg tggatgtgac ctgtaggggc ggatgcttga cagctgaaac ccctgctcac       960
     tgcatccagg tttgtcaccg aacccacggc gggcgggtgt tgcgacacga tgccatcgcg      1020
     aaggcgctgt cagtacatct tacgcagcgg ggttggagtg ttaggagaga agtctcctat      1080
     cagacggttg ttggagtccg acgacccgac attgtgcttc ttgcggggcg agaaatcgcc      1140
     gtcgtggacg tgcaagttgt cgcacctaac ccttctctgg acagcgcaca ccgcaaaaag      1200
     gtcgccaagt atcgtgacga ggctcagctc gccacgtgct tggtgcgagg agcttcggta      1260
     caaccaagga ggagagcgga agaagaaacg caagtgcgat ttgccagcgc aaccatctcg      1320
     tggcgaggtg tctggtcttc cgagtccgcg cggtccctgc gtgagctggg gctgacggac      1380
     cgggagctgg cacaatacag cacctacgac ctgcgtggct cctggatgaa ctgggtaagg      1440
     tttggtgcgt ctacgtctac tcggatggcg tggcgcccgt aaaatctcca aaggtaatcg      1500
     ccaaaccgtt tggtttctac atctgcgttc ccttcaggaa cggactcggt ttcatcattt      1560
     cctaa                                                                  1565
//
ID   R2_KF       repbase;    DNA;    INV; 4482 BP.
XX
AC   GU949558;
XX
DT   04-NOV-2011 (Rel. 16.12, Created)
DT   04-NOV-2011 (Rel. 16.12, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 from Kalotermes
DE   flavicollis.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_KF.
XX
OS   Kalotermes flavicollis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea; Termitoidae; Kalotermitidae; Kalotermitinae;
OC   Kalotermes.
XX
RN   [1]
RP   1-4482
RA   Ghesini S., Luchetti A., Marini M. and Mantovani B.;
RT   "The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera):
RT   Characterization and Dynamics.";
RL   Journal of Molecular Evolution 72(3), 296-305 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU949558; Positions       1    4482.
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           335..4261
FT                 /product="R2_KF_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MEVPLTSSLGSGATQAPGTPELLGEHTVERPGLDQGH
FT                 SYGLLMDDVELPVRLPFFGPLICPGCRTLLTSEETISSHHRRVHPDARTRW
FT                 VCYGCDSPFMTYRAIKCHLPKCSGRKVVTGDHICNGCTKRFESQRGLSLHK
FT                 RRAHPGLRNEEMLEPPVRAERRPNAHKSSIWSIDEIRILEQYEAAYVGDLH
FT                 INMKIAAHLPFKTNKQVSNYRNDRRKKSRTATDASQQGLGPNDGNRGIVPS
FT                 GQSSPLFLEGSDAEGDEDVFNVLVPPTLGGLEPAGQVHSLSEGETSPLVGE
FT                 ADPCFMGGTPSAGEASGSTLLGPDPTPADGYSLVRKDLQLSVQTSPLLAVG
FT                 SVGTESVQFERGVLSCGTPPEFLHPEQFAHCANNDPVLNASEEQVHAPLGE
FT                 EANDLPDNNHPSELGVDPEDPTCSPATEQVQPSSEEEADDPFAQFKAWRRR
FT                 VASYALKIETGVLPAQVDDLLRRLRDGDTQSKVTCEEVEEVVLSLTRTILG
FT                 GTAPKKRVEGRTKWTYKSRTNHEARKRIMYARCQDLYRRRPQRPVERAVGY
FT                 QAEESLLDNQDERPSHGAFETFYTGLWGKSGQCNITMPPGVPRHTGHVLRE
FT                 VTPKDIYSRLRKLKKDYAPGPDGVTKLKVQSMGAYPSLLAKVYNLVMLTGY
FT                 FSSCWKEHKTSLIPKDRGSPMDVSNWRPITIGSLLSRIYTGLIERRLRTVS
FT                 DIHQRQVGFMPVNGCAANLFIFDECIRQAKKEGTIVGSLIDVAKAFDTVPH
FT                 EAILRALSSQGVDEHTMAHIRDMYSGIRTRINGKGSDIPLVRGVKQGDPLS
FT                 PMLFNMVMDPLIRDLQRKGFRIGGHEIGALAFADDIVLLADSIDGAQDHVD
FT                 QVGRYMNKLGMTLNPRKSSSFLITAMRKTWICRDPGLSIGETKVPGARPSS
FT                 ALKYLGVNYTLSEGLESGALIDKLMQAVNRARGLALKPLQKVNLILERIIP
FT                 KFLYGIILGGPSLTRLHAADKCVRMAVKEILHLHPSTTDHVLYARKKDGGM
FT                 GIPRLAHLVRLASLRSGLALLASGDVAVQAAGMAGDLEGRCKKVANDLRLN
FT                 WPVTLRDVVRASNKFKSQESKDWERLASQGHGVKDFRNDRLGNCWLYDPTV
FT                 LSSSRYTDALRLRTNTFGVNVALRRADKDLEVNCRRCHGKPETLGHVLGEC
FT                 VAGKGMRIQRHDKMAAFVATKCEEKGYQTTREQLFSIEQGKLKPDLVVIDG
FT                 ERALIVDVTVRFESGNALSRGASEKIEKYQPLADYFVSQGAVREANVLPIV
FT                 VGSRGAITQATLKSLATLGLDVERVGKYLAICAVASSVEIACMHLDYT"
XX
SQ   Sequence 4482 BP; 1109 A; 1130 C; 1275 G; 968 T; 0 other;
     gagaggtcac tgttgctgat cagctggaca cctagctgac tgcgtgcatg cgtgcacgcc        60
     gcgcgccgcc tcctcgtggt accgctggta acgcagggtc actgagacta cctgcggcta       120
     aaggcgcgcg cgagggattg taagtccacc acctccacgt ggttccccgc gggcaacggc       180
     atagttcatc tgccggccaa gcgtgccgtt ccctcgatcc tcctctgatt agggatagga       240
     ggggggcggt ggctcccgcc gacgacctgg caaacacctt ggacacgcta agataatagg       300
     ccgtcctccg ggccggccga atcataagca cacaatggaa gtccctctaa catcaagcct       360
     cggatctggg gcaacccaag ctcccgggac cccagaatta ttaggggagc acaccgttga       420
     acgacctggc cttgatcaag gacattctta tggtttgtta atggatgacg tagagctgcc       480
     ggtgaggtta ccattttttg ggcctctcat atgcccagga tgcaggacgc tgctcacctc       540
     tgaggaaacg attagcagcc atcataggag ggtccaccct gatgcccgga cgaggtgggt       600
     ctgctatggt tgtgattccc catttatgac ataccgggcc attaaatgtc acttacctaa       660
     atgctctggc aggaaggtag tgacagggga tcacatctgt aatggctgca caaagcggtt       720
     tgagtctcag agaggtctct cactgcataa aaggagagcc catccgggtc ttcggaacga       780
     ggaaatgctt gagcctcctg tgagagctga gcgacgccct aacgcacata aatcctcaat       840
     atggagcatt gatgagattc gtatcctgga gcaatatgag gctgcctacg tcggcgatct       900
     ccacatcaac atgaagatag ctgctcacct gccgttcaaa accaataaac aagtgagcaa       960
     ctatcggaac gatcgccgta aaaagtccag aacggcgact gacgcgagcc aacagggact      1020
     tggtcccaat gacggcaata gaggaattgt ccccagcggg cagtcatccc cgttattttt      1080
     agagggctct gacgccgagg gggacgagga tgtttttaat gtcctagtgc cgcccaccct      1140
     agggggtctt gaacctgctg gacaggttca ttcactctct gagggggaaa cttcgccgct      1200
     ggtcggcgaa gcggatccct gttttatggg tggcacgccg tctgccggag aggcctcggg      1260
     ctcaaccttg ttgggtccgg atcccacccc ggcagatgga tattctctgg tcaggaaaga      1320
     cttacagctc agtgtgcaga catccccgtt attagcagtg ggctctgtcg gcactgagtc      1380
     tgtgcaattt gaacgtgggg tgttatcgtg cggtacgcca ccagaatttt tacacccgga      1440
     acagtttgca cattgtgcaa acaatgaccc ggttttgaac gcgtcagagg agcaggtgca      1500
     cgccccacta ggggaagaag ccaatgacct ccctgacaac aaccatccgt cggagctggg      1560
     ggttgacccc gaagacccga cgtgtagtcc cgcaacggaa caggtccaac cctcttctga      1620
     ggaagaagcc gatgacccgt ttgcgcaatt caaggcgtgg cgaagaaggg tggcttccta      1680
     tgccttgaag atcgagaccg gggttcttcc agcccaagta gatgacctcc ttcggagact      1740
     gagggatggg gacacacagt ctaaggtaac gtgcgaggag gtggaggaag tggttttatc      1800
     cctcactaga acgatactgg gtggcacggc acccaaaaag cgcgttgagg gtcgaacgaa      1860
     gtggacgtac aaaagtcgaa ccaaccatga ggctcgcaag cgtataatgt acgctagatg      1920
     ccaggactta tatcgcaggc ggcctcagcg acctgtggag agggccgtcg gataccaggc      1980
     ggaggaatct cttcttgaca accaagatga gagaccatcc cacggagcct ttgaaacctt      2040
     ctatactggg ctctggggta agtccggtca atgcaatatc acaatgcctc ctggtgtgcc      2100
     tcggcacacc gggcatgtac tgagggaagt tacgccaaag gacatctact cgaggctgag      2160
     gaaactaaag aaagactatg cacccggccc ggatggcgta actaaattga aggtgcagag      2220
     catgggagca tatccctcac ttcttgcaaa ggtatataat ctggtgatgc taaccggtta      2280
     cttctccagt tgttggaagg aacataagac ctctctaatt cctaaggata gaggaagccc      2340
     aatggatgtc agtaattgga gaccgattac gattggctcc ttactcagtc ggatttatac      2400
     gggtctcata gaacggaggc tgaggacagt ttctgacatc caccaaaggc aggtagggtt      2460
     tatgcccgtc aatggttgtg ccgccaactt gtttatattt gatgaatgca tccgacaagc      2520
     caaaaaagag gggacaattg tcggcagtct tatagacgtc gccaaagcat ttgataccgt      2580
     accccatgaa gccatcctac gggcgttgag ctcgcaaggt gtagatgagc acacgatggc      2640
     tcacataaga gacatgtatt ccggtatccg tacgcggatc aacggcaaag ggagcgatat      2700
     ccctctggtg agaggagtga agcaaggtga tcctctatcc ccaatgctct ttaatatggt      2760
     gatggaccct ctcatacgag acctacagag gaagggcttc agaattggcg gccacgagat      2820
     aggggcgttg gcctttgcgg atgacatcgt cttgttggcg gactccattg atggggccca      2880
     ggatcatgta gatcaggttg ggcgctacat gaataaactg ggcatgaccc tcaatccacg      2940
     aaaatcgtcc tccttcctca tcactgcgat gaggaagacc tggatatgta gggacccggg      3000
     cttgtcaata ggggagacta aggtgcctgg cgccagaccc tcctctgcac ttaaatatct      3060
     cggagtaaac tacacactct cggaaggcct ggagagtggt gccttgatag acaagctcat      3120
     gcaggccgtt aacagagcac gaggtttggc ccttaaaccg ctgcaaaagg tcaacctcat      3180
     acttgaacga ataatcccca aatttttgta tggtatcatc cttggcgggc ctagtttgac      3240
     taggctgcat gcagccgaca agtgtgtcag gatggctgta aaggagatcc tgcacctcca      3300
     tcctagtaca acagaccatg tactatatgc cagaaaaaag gatgggggaa tggggattcc      3360
     ccgactggct caccttgtcc gcctagccag tctcaggtcg gggttagctc tgttagcgag      3420
     tggggacgtt gccgttcaag cagcggggat ggcaggcgac ctggaaggcc gctgcaagaa      3480
     agtcgcaaat gatttgcggc ttaattggcc ggtgacgctg agagatgtgg tgagagccag      3540
     caataaattt aaatctcaag aatcaaaaga ttgggagcgt ctggcctccc agggtcacgg      3600
     agtcaaggac ttccggaatg accgtcttgg gaattgctgg ctctatgatc cgacggtgtt      3660
     gtccagcagc agatacactg atgctctcag gctgaggact aacacgttcg gcgtcaacgt      3720
     tgccctaagg agggccgaca aggaccttga ggtcaactgt cggcgatgcc acgggaaacc      3780
     tgaaacctta gggcacgtgc tcggagagtg tgtggcaggt aagggtatga ggatacaacg      3840
     acacgacaag atggcggcct ttgtggctac aaaatgtgaa gaaaaggggt accagacgac      3900
     ccgcgaacag ctattctcca tcgagcaggg aaaactcaaa cctgacctcg tcgtaataga      3960
     cggggaaagg gctctcattg tcgacgtaac agtccgcttt gagagtggga acgccctctc      4020
     acggggagcc tctgagaaga tcgaaaagta tcagcctttg gctgactatt ttgtctctca      4080
     gggggctgtt cgagaagcca acgtgttacc gattgttgtc ggttccaggg gagcaatcac      4140
     ccaggccaca ttgaagtccc tagctacgct agggttagat gtggaacgtg ttggcaagta      4200
     cctcgccatc tgtgccgttg cctccagcgt tgagatcgca tgcatgcacc tggattacac      4260
     ataatgtccc ttttggcttg cccccacctg cttaaaggaa ctggcaggaa agagagtgat      4320
     ccgtgccata gaaatatggt tatccggggc aagtcactag caatatggga cttctccggg      4380
     tccgtgcggt ccttccaaca tgagctggac gtagtccact ctatgacttg aacgatacgg      4440
     gggcgtatct cccccggaag aggtcgccta ggcgacttag aa                         4482
//
ID   R2_RL       repbase;    DNA;    INV; 5021 BP.
XX
AC   GU949555;
XX
DT   04-NOV-2011 (Rel. 16.12, Created)
DT   04-NOV-2011 (Rel. 16.12, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 from Reticulitermes
DE   lucifugus.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_RL.
XX
OS   Reticulitermes lucifugus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea; Termitoidae; Rhinotermitidae; Reticulitermes;
OC   Reticulitermes.
XX
RN   [1]
RP   1-5021
RA   Ghesini S., Luchetti A., Marini M. and Mantovani B.;
RT   "The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera):
RT   Characterization and Dynamics.";
RL   Journal of Molecular Evolution 72(3), 296-305 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU949555; Positions       1    5021.
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           1139..4732
FT                 /product="R2_RL_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MMADYNNSVDHALEDNTRLIFARDAVLARVCGPFDNL
FT                 ECGLCGVLLTSLQGVREHCHRAHHNLDLTFQCTKCDKGFSSYRGICCHFSK
FT                 CIGARISVSEGPLSCSECEREFDSKRALSTHERHMHPGIRNAKRLKDFNPR
FT                 GGGGKTIHGNTKWTEEEVQLLVSLSKRFEGYKSINKEISLILTSKTCKQIS
FT                 DKRRYLNLHNGNGGLAAAEAVLEFCEDSHPEVTESDGAVLSEIMDEECHQS
FT                 SVTMRSSIVHGDIGREVQGKELVRIPPDNSVMGNCVVLLRKLATDKRSDLD
FT                 LSKDKELRIDIEKATKANRESADGRVIQSVAGNEIDPDTFQWKELLLGQVR
FT                 GFPRVDENSELFDLDDKLTKELSSDSPVWNDNCELIVSDLCQVLCKKKYEL
FT                 GRQHHVRKGKRHRGIHHKREKFRECQKIFRKSPRKLAEYLYRDKDLSHISK
FT                 DASTPQGIEQYYSQLWGEPELLESNTIEEKLPSSSLFDCLPPITPEEVEGR
FT                 IHKIRPSSAPGLDGVRKIHLVGKGITLVLVKLYNLLFLTGGYPECWKRNRT
FT                 VFIPKIGKDLSEVGGWRPLTIGSLLARMYSAFLERRIRRVTSLSLSQRGFT
FT                 NIQGCHVNLTILKEGIRQAKVKNGGVIVSVDIEKAFDTIPHSVIFSRLASQ
FT                 GVPPLLRKIISNMYKDVYTVIEGQCIPIKRGVKQGDPLSPLLFNIAIDPVL
FT                 RSLEEFQGGLPLGNSAIKILAFADDIILGASSAGQAQQMVDMLGIGLTSCG
FT                 LGVSHRKCFGFQIVNKNKTWTIVDPMITLNGSSLPFSGPEDRLPYLGVDIN
FT                 PWDRKSRYDAGQRLISAAKRGSQLSLKPQQKINLITAFLLPKFLYILIEDP
FT                 PSPAYLKSIDHDLRQIYKNILHLPNCVSTAFMYSPKRDGGLGLPRLSCLVP
FT                 LAHLKAGIKLGSLQDSLVREITTSDRFVRTMGSVAHSLWASWSLTLQDIYK
FT                 LKSALKRREAKAWESCVSQGQGAAQFRGDSIGNNWLHNPGTYRPGQYIEAL
FT                 KLRANLTGVRVNLKRSGYNVPITCRFCKDIPETQAHVLGLCPKTKGMRIQR
FT                 HDSIVNRVRDKLKTKSPVALMHEQNFTVEEGQVFKPDIVTILGEVGYVIDV
FT                 TVRYDDRDYIKDASVEKIRKYEALKGYLKDLYPQLNKVEVLPLVFGSRGAV
FT                 PGSTVHNMGLLGFTKREMVHISRKVIADSLIISNFLEVY"
XX
SQ   Sequence 5021 BP; 1313 A; 1037 C; 1330 G; 1341 T; 0 other;
     ctcactgctg tcatgccatt gttaatgcgt tgggtgatgg cgggtgatgg gagacgagtt        60
     acagcagagc tggcttcacg gggggggctg tagttgcccg aaccagtctg cttctgagtg       120
     cctccacgtg gcctcgctgg aaacgtcgga gctgcttacg gctaacccgt agacaactcc       180
     ggcggccaaa ctcagaaaac ggccttacta ccagggtcat ccctcgcggc ggcgctaaga       240
     ccttactgta tgtactacgg actacagttg agtagcgcgg gagagcactt gatgtgaggg       300
     tagcaacttg ttgctacttc gactgtctcc ctgaagattt ccgaaggggt gccgcaagtc       360
     catgggggcg gtcctgctgt gggagttatc ttgcacccgg gaagccctca gtggataaat       420
     actccaaaat ggcttagcca cctcacgtgg agagagggga attaggggtt tactcctaag       480
     ggccgatgcc tccaatcgga tttccccggg caacggctat tatcagccgg ctaagttcgg       540
     accctcatct actgatggga tactctctct ccccccgcct gcgtgattag ttgggaatgc       600
     acgcgggcgg gtgattctga caagcccagc ccaaaagttc ttaccacgac gtacccgggg       660
     gtgtcacccg aactaatata ttttccgccg atcggttcgc tgtgggggga tgtcggggcc       720
     tggtggccgg gaaccgtcag ccgctctttg agtgtcctgc gtaacccgga ggcggtgacg       780
     tcgaagggct aggctagcac ggtccagacc cctgaacgcc tggggagacg ggcccaccac       840
     ctgagtagga gtgggtcctt tacctcattt gaggtgtctc ctcgttcttg tagggggcga       900
     aggacgagga atgcatccgt ccctccagga tgctggtggt ttccgtctgg tgggctcatg       960
     ctgaaacgcg caggtgccga tttgtcgaag aggacatatg gggtaaccca tagaacctag      1020
     gcaggagtaa tcccttagct gggggggtca gctggtgggt cctgtcaatt tatcctcccc      1080
     tccatgccag agccggtccg aggttagaga cggactcatt ttctcctttt tatatgtcat      1140
     gatggccgat tataataatt ctgttgatca tgcacttgag gataatacta gattgatatt      1200
     tgcgcgtgac gcagtacttg cgagagtatg tggacctttt gataacttgg agtgcgggtt      1260
     gtgtggggtg ctcctgacgt cccttcaggg cgttcgagag cattgccacc gggcgcacca      1320
     taacttggat ttgacttttc aatgtactaa atgcgataaa gggttttcct cgtatagggg      1380
     aatttgttgt catttttcaa agtgtatagg agctcgtata tctgtttcag agggccccct      1440
     tagttgttca gaatgtgaaa gggaatttga ctctaaaaga gctctttcaa cccacgagag      1500
     gcatatgcac ccagggatta ggaatgctaa gaggctcaaa gattttaatc cgcggggggg      1560
     gggtggtaaa actattcacg gcaatactaa gtggactgaa gaggaggtcc agttgcttgt      1620
     atcacttagc aagagatttg aggggtataa gtctatcaat aaagaaatta gccttatttt      1680
     aacatcaaaa acttgtaaac aaatttctga taaacgtcgc tatttaaatt tgcataatgg      1740
     aaatgggggg ctagctgcag cggaagctgt attagaattt tgtgaagata gtcaccctga      1800
     agttactgag agcgatgggg cggtgctttc tgaaatcatg gatgaggaat gtcatcagtc      1860
     atcggtaact atgaggtcaa gcatcgtaca tggcgacatt ggtcgtgagg ttcaagggaa      1920
     ggaattggtc cggatcccgc ctgataatag tgtaatgggg aattgtgttg ttctacttag      1980
     gaaacttgct actgacaaaa gaagtgattt ggacttgagt aaggataaag agttgcgcat      2040
     tgacattgag aaggcgacga aagctaacag agaaagcgca gacggtaggg taattcaatc      2100
     tgtggctggt aatgagatcg atcccgatac ttttcaatgg aaagaattgc tgcttgggca      2160
     ggtacggggg tttccacgag ttgatgagaa ctctgaatta tttgatttgg atgacaaatt      2220
     gactaaggaa ttatcttccg acagccccgt gtggaatgac aactgcgaac ttattgtgtc      2280
     ggacttatgt caggtcttat gcaaaaagaa atatgagtta ggtaggcagc atcacgttag      2340
     gaaaggaaag aggcatcggg gtatacatca taagagggag aaatttaggg aatgccagaa      2400
     gatatttaga aagtccccca gaaagcttgc cgaatatctc taccgtgata aggacctgtc      2460
     tcatatcagt aaagacgcta gcactccgca gggtatagag caatactatt ctcagttatg      2520
     gggggaacct gaattactag aatccaacac aattgaagaa aagttaccgt ccagttcctt      2580
     atttgactgt cttcccccca tcacgccgga ggaggttgag ggaagaatcc ataagattcg      2640
     accgtcttcc gccccagggt tggatggggt acgcaagatc catcttgtcg gtaaagggat      2700
     aaccctggtc cttgttaaac tctacaactt gctatttttg actgggggat atcctgagtg      2760
     ttggaagcgg aacaggaccg tctttatacc gaagattggg aaagatctga gtgaggtggg      2820
     aggatggaga ccgttgacaa ttggttccct attagctcgg atgtattcag ccttcctaga      2880
     gaggaggatt aggagggtga cctccttgtc cttgtcgcag aggggcttta cgaatatcca      2940
     aggttgtcac gttaatttga ctatcctcaa agaaggcatt cgacaggcca aagtcaagaa      3000
     cgggggagtt atagtctcag tagacataga gaaggctttt gacacaatcc ctcattctgt      3060
     aattttctcc cgcttggcgt ctcaaggtgt tcctcccctt cttaggaaaa ttatttccaa      3120
     tatgtataag gatgtctaca ctgtgattga ggggcagtgt attccaataa agagaggagt      3180
     taaacaaggg gatcctcttt ctccactact tttcaatatt gccatcgatc ctgtgttgcg      3240
     cagtttggag gagtttcagg ggggtctccc acttggtaac tcggctatta agatcttggc      3300
     ctttgctgat gatattatat taggagctag ttcggcgggt caggcgcagc agatggtgga      3360
     tatgttggga ataggactta cttcgtgtgg gttgggagta tcccatagaa aatgttttgg      3420
     atttcaaatc gtgaataaaa acaagacctg gacaattgtt gacccgatga tcacactcaa      3480
     tggttcttca ttacccttct cagggccaga ggacaggttg ccttatctcg gggtggatat      3540
     aaacccatgg gataggaaat cacggtatga cgctggacag agacttattt cggcggccaa      3600
     acgaggctct caactatccc ttaagcctca gcaaaagata aatttaataa cagcttttct      3660
     tttgccaaag tttctgtaca ttctgattga agatccgcct tcgcctgcct atctgaaatc      3720
     catcgatcat gacctgaggc agatatataa gaatattttg cacctcccta actgtgtgtc      3780
     aaccgccttt atgtactctc ccaagaggga tggtggtttg gggctaccgc gtctgtcctg      3840
     tctagttcca cttgcccatt taaaagccgg gatcaagctc ggttccctcc aagattcttt      3900
     ggttagggaa attaccacct cagacaggtt tgtacgtaca atgggttcgg tagctcactc      3960
     cctttgggca tcatggtctc taacgttgca ggatatctat aaacttaagt ccgcactgaa      4020
     acgtagggaa gctaaggcat gggagagttg tgtgtctcag ggacaaggag cagcgcaatt      4080
     tcgcggggac tcaattggaa acaactggct ccataatccg ggaacctatc gacctggaca      4140
     gtatatcgaa gcacttaagc ttcgtgctaa tttaacaggg gttagagtca acttgaagcg      4200
     ttcaggctat aatgttccaa taacttgtag gttctgtaag gatatacctg aaacgcaggc      4260
     tcatgttctt ggactttgtc caaagaccaa gggaatgaga atacaaaggc acgattcaat      4320
     tgtgaatagg gtgcgagata aacttaagac taagtcgccc gttgctctca tgcatgagca      4380
     aaacttcacc gttgaggaag gccaggtgtt caaaccagat atagtgacga ttttgggaga      4440
     ggtgggttac gtaattgatg tgacagtacg gtatgacgat agagattaca tcaaggatgc      4500
     ctctgtggaa aaaatcagga aatacgaggc ccttaaaggg tacctgaagg atttatatcc      4560
     acagctgaat aaggtagagg ttttgcctct tgtctttggt agcagagggg ccgtgccagg      4620
     tagtactgtt cacaacatgg gattgttagg ttttacgaaa cgtgaaatgg tccacatctc      4680
     tcgcaaagtt atagccgact cactgataat ctctaatttt ttagaggttt attgagttag      4740
     atatatatga cgactgattc ttccctaact aaaatataat ttggaatgtg cattacttat      4800
     actttattgt atttattgac atccgtagta gtctgtttag tggatttaga tcgttaacca      4860
     ttctgtgacg tcgctgatgt ctatatgtac cagtggcaga atgctgacta agaacaaaat      4920
     aattttaaac aatagacagc actaagaaat tctgcaaact ggaacgtggc ccacggtagg      4980
     ccaatatacc ggaaagggaa aatgacacat ccccccttaa a                          5021
//
ID   R2_RU       repbase;    DNA;    INV; 5020 BP.
XX
AC   GU949554;
XX
DT   11-SEP-2012 (Rel. 18.12, Created)
DT   11-SEP-2012 (Rel. 18.12, Last updated, Version 3)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 from Reticulitermes
DE   urbis.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2_RU.
XX
OS   Reticulitermes urbis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea; Termitoidae; Rhinotermitidae; Reticulitermes;
OC   Reticulitermes.
XX
RN   [1]
RP   1-5020
RA   Ghesini S., Luchetti A., Marini M. and Mantovani B.;
RT   "The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera):
RT   Characterization and Dynamics.";
RL   Journal of Molecular Evolution 72(3), 296-305 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU949554; Positions       1    5020.
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           1138..4731
FT                 /product="R2_RU_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MMADYNNSVDHALEDDTRFIFARDSVLARVCGHFDNL
FT                 KCELCGVLLTSLQGVREHCHRSHHNLDLTFQCTKCDKGFSSYRGICCHFSK
FT                 CRGARISVSEGPLSCSECERKFDSKRALSTHERHMHPGIRNAKRLKDFNPR
FT                 GGGKTIHGNTKWTEEEVQLLVSLSKRFEGYKSINKEISLILTSKTCKQISD
FT                 KRRYLNLHNGNGGLAAAEAVLVFCDDSHLEVTDSDGAVLSEIMDEEYYQSS
FT                 LTMRSSIVHGDIGREVQGKDLVRIPPDNSVMGNCVVLLRKLATEKRSDLDL
FT                 SKDKELRIDIEKATKANRESADGRVIQSVADNEIDPDTFQWKELLLGQVRG
FT                 FPRVDENSELFDLDDKLTSELSSDSPVWNDNCELIVSDLCHVLCKNKYELG
FT                 RQHHVRKGKRHRGIHHKREKFRECQKIFRKSPRKLAEYLYRDKDLSHISKD
FT                 VSTPQGIEQYYSQLWGKPELLESNTTEEMLPSSSLFDCLPPITPEEVEGRI
FT                 HKIRPSSAPGLDGVGKIHLVGKGITLVLAKLYNLLFLTGGYPECWKRNRTV
FT                 FIPKIGKDLSEVGGWRPLTIGSLLARMYSAFLERRIRRVTSLSSSQRGFTN
FT                 IQGCHVNLTILKEGIRQAKVKNGGVIVSVDIEKAFDTIPHSVIFSRLASQG
FT                 VPPLLRKIISNMYKDVYTVIEGQCIPIKRGVKQGDPLFPLLFNIAIDPVLR
FT                 SLEEFQGGLPLGNSAIKILAFDDDIILGASSAGQAQQMVDMLGIGLTSCGL
FT                 GVSHRKCFGFQIVNKNKTWAIVDPMITLNGSSLPFSGPEDRLPYLGVDTNP
FT                 WDRKSRYDAGQRLISAAKRGSQLSLKPQQKINLITTFLLPKFLYILIEDPP
FT                 SPAYLKSIDHDLRQIYKNILHLPNCVSTAFMYSPKRDGGLGLPRLSCLVPL
FT                 AHIKAGIKLGSLQDSLVREITTSDRFVRTMGSVSHSIGASWPLTLQDIYKL
FT                 KSALKRREAKAWESCVSQGQGAAQFRGDSIGNNWLHNPGTFRPGQYIEALK
FT                 LRANSTGVRVNLKRSGYNVPITCRFCKDIPETQAHVLGLCPKTKGMRILRH
FT                 DSIVNRVRDKLKTKSPVALMHEQNFTVEEGQVFKPDIVTILGEVGYVIDVT
FT                 VRYEDRDYIKDASVEKIRKYEALKGYLKDLYPQLNKVEVLPLVFGSRGAVP
FT                 GSTVHNMGLLGFTKREMVHISRKVITDSLIIISNFLEVY"
XX
SQ   Sequence 5020 BP; 1330 A; 1035 C; 1306 G; 1349 T; 0 other;
     cacactgctg tcatgccatt gttaattcgt tgggtgatgg cgggtgatgg gagacgagtt        60
     acagcagagc tggcttcacg ggggggctgt agtggcccga accagtctgc ttctgagtgc       120
     ccccaagtgg cctcgctgga aacgtcggag ctgcttacgg ttaacccgta gacaactccg       180
     gcggccaaac tcagaaaacg gccttactac cagggccatc ccttgcggtt gcgctaagac       240
     cttactgtat gtactacgga ctacagttga gtagcgcggg agagcactcg atgtgagggt       300
     agcaacttgt tgcttcttcg actgtctccc tgaagagttc cgaagaggtg ccgcaagtcc       360
     atgggggcga cccggctgtg ggagttatcc tgcacccggg aagccctcag tggataaata       420
     ctccaaaatg gcttagccac ctcacgtgga gagaggggaa ttaggggttt actcctaagg       480
     gccgatgcct ccaatcggat ttcccagggc aacggctatt atcagccggc taagttcgga       540
     ccctcatcta ccgatgggat actctctctc cccccgcctg cgtgattaat tgggaatgca       600
     cgagggcggg tgattctgac aagcccagcc caaaagttct taccacgacg tacccggggg       660
     tgtcacccga actaatatat tttccaccga tcggttcgct gtggggggat gtcggggcct       720
     ggtggccagg aaccgtcagc cgctctttga gtgtcctgcg taacccggag gcggtgacgt       780
     cgaagggcta ggctagcacg gtccagaccc ctgaacgcct ggggagacgg gcccaccacc       840
     tgtgtaggag tgggtccttt acctcatttg aggtgtctcc tcggtctagt agggggcgaa       900
     ggacgaggga tgcatccgtc cctccaggat gctggtggtt tccgtctggt gggctcatgc       960
     tgaaacccgc aggtgccgat ttgtcgaaga ggacatatgg ggtaacccat agaacctagg      1020
     caggagtaat cccttagctg ggggggtcag ctggtgggtc ctgtcaattt atcctcccct      1080
     ccatgccaga gccggtccga ggttagagac ggactcattt tctccttttt atatgtcatg      1140
     atggccgatt ataataattc tgttgatcat gcacttgagg atgatactag atttatattt      1200
     gcgcgtgatt cagtacttgc gagagtatgt ggacatttcg ataacttgaa gtgtgagtta      1260
     tgtggagtgc tccttacgtc ccttcagggc gttcgggagc attgccaccg gtcgcaccat      1320
     aacttggatt tgacttttca atgtactaaa tgcgataaag ggttttcctc gtatagggga      1380
     atttgttgtc atttttcgaa gtgtagagga gctcgtatat ctgtttcaga gggccccctt      1440
     agttgttcag aatgtgagag gaaatttgac tctaaaagag ctctttcaac ccacgagagg      1500
     catatgcacc cagggattag gaatgctaag aggctcaaag attttaatcc gcgggggggt      1560
     ggtaaaacta ttcacggcaa tactaagtgg accgaagagg aggtccaatt gcttgtatca      1620
     cttagcaaga gatttgaagg gtataagtct atcaataaag aaattagcct tattttaaca      1680
     tcaaaaactt gtaaacaaat ttctgataaa cgtcgctatt taaatttgca taatggaaat      1740
     ggggggctag cggcagcgga agctgtatta gtattttgtg atgatagtca ccttgaagtt      1800
     actgacagcg atggggcggt gctttctgaa atcatggatg aggaatatta tcagtcatcg      1860
     ctaactatga ggtcaagcat cgtacatggc gacattggtc gtgaggttca agggaaggat      1920
     ttggtccgga tcccgcctga taatagtgta atggggaatt gtgttgttct acttagaaaa      1980
     cttgctactg aaaaaagaag tgatttggac ttgagtaagg ataaagagtt gcgcattgac      2040
     attgagaagg cgacgaaagc taacagagaa agcgcagatg gtagggtaat tcaatctgtg      2100
     gctgataatg agatcgatcc cgatactttt caatggaaag aattgcttct tgggcaggta      2160
     cgggggtttc cacgagttga tgagaactct gaattatttg atttggatga caaattgact      2220
     agtgaattat cttccgacag ccccgtgtgg aatgacaact gcgaacttat tgtgtcggac      2280
     ttatgtcacg tcttatgcaa aaataaatat gagttaggta ggcagcatca cgttaggaaa      2340
     ggaaagaggc atcggggtat acatcataag agggagaaat ttagggaatg ccagaagata      2400
     tttagaaagt cccccagaaa gcttgccgaa tatctctacc gcgataagga cctgtctcat      2460
     atcagtaaag acgttagcac tccgcagggt atagagcaat actattctca gttatggggg      2520
     aaacctgaat tactagaatc caacacaact gaagaaatgt taccttccag ttccttattt      2580
     gactgtcttc ctcccatcac gccggaggag gttgagggga gaatccataa gattcgaccg      2640
     tcttccgccc cagggttgga tggggtaggc aagatccatc ttgtcggtaa agggataacc      2700
     ctggtccttg ctaaactcta caacttgcta tttttgactg ggggatatcc tgagtgttgg      2760
     aagcggaaca ggaccgtctt cataccgaag atcgggaaag atctgagtga ggtgggagga      2820
     tggagaccgc tgacaattgg ctccctatta gctcggatgt attcagcctt cctagagagg      2880
     aggattagaa gggtgacttc cttgtcctcg tcacagaggg gctttacgaa tattcaaggt      2940
     tgtcacgtta atttgactat cctcaaagaa ggcattcgac aggccaaagt taagaacggg      3000
     ggagttatag tttcagtaga catagagaag gcttttgaca caatccccca ttctgtaatt      3060
     ttttcccgct tggcgtctca aggtgttcct ccccttctta ggaaaattat ttccaatatg      3120
     tataaggatg tttacaccgt gattgaggga cagtgtattc caataaagag aggagttaaa      3180
     caaggggatc ctctttttcc actacttttc aatattgcca tcgatcctgt gttgcgcagt      3240
     ttggaggagt ttcagggggg tctcccactt ggtaactcgg ctattaagat cttggccttt      3300
     gatgatgata ttatattagg agctagttcg gcgggtcagg cgcagcagat ggtggatatg      3360
     ttgggaatag gacttacttc gtgtgggttg ggagtatccc atagaaaatg ttttggattt      3420
     caaatcgtga ataaaaacaa gacctgggca attgttgacc caatgatcac actcaatggt      3480
     tcttcattac ccttctcagg gccagaagac aggctgcctt atctcggggt ggatacaaac      3540
     ccatgggata ggaaatcacg gtatgacgct ggacagagac ttatttcggc tgccaaacga      3600
     ggctctcaac tatcccttaa gcctcagcaa aagataaatt taataacaac ttttcttttg      3660
     ccgaagtttt tgtacattct gattgaagat ccgccttcgc ctgcctatct gaaatccatc      3720
     gatcatgacc tgaggcagat atataagaat attttgcacc tccctaactg cgtgtcaacc      3780
     gcctttatgt actctcccaa gagggatggt ggcttggggc taccgcgtct gtcctgtctt      3840
     gttcctcttg cccatataaa agccgggatc aagcttggtt ccctccaaga ttctttggtt      3900
     agggaaatta ccacctcaga caggtttgta cgtacgatgg gttcggtatc tcactccatt      3960
     ggggcatcat ggcctctaac gttgcaggat atctataaac ttaagtccgc actgaaacgt      4020
     agggaagcta aggcatggga gagttgtgtg tctcagggac aaggagcagc gcaatttcga      4080
     ggggactcaa ttggaaacaa ctggctccat aatccgggaa cctttcgacc tggacagtat      4140
     atcgaagcac ttaagcttcg tgctaattca acaggggtta gagtcaactt gaagcgttca      4200
     ggctataatg ttccaataac ttgtaggttc tgtaaggata tacctgaaac gcaggctcat      4260
     gttcttggac tttgtccaaa gaccaaggga atgagaatac taaggcacga ctcaattgtg      4320
     aatagggtgc gagataaact taagactaag tcgcccgttg ctctcatgca tgagcaaaat      4380
     ttcactgttg aggaaggcca ggtgttcaaa ccagatatag tgacgatttt gggagaggtg      4440
     ggttacgtaa ttgatgtgac ggtacggtat gaagatagag attacatcaa ggatgcctct      4500
     gtggaaaaaa tcaggaaata cgaggccctt aaagggtact tgaaggatct gtatccacag      4560
     ctgaataagg tagaggtatt gcctcttgtc tttggtagca gaggggccgt gccaggtagt      4620
     actgttcaca acatgggatt gttaggtttt acgaaacgtg aaatggtcca catctctcgc      4680
     aaagttatta ccgactcact gataataatc tctaattttt tagaggttta ttgagttaga      4740
     tatatataac gactgattct tccctaacta aaatataatt tggaatgtgc attacttata      4800
     ctttattgta tttattgaca tccgtagtag tctgtttagt ggatttagat cgttaaccat      4860
     tctgtgacgt cgctgatgtc tacatgtacc agtggcagaa tgctgactaa gaacaaaata      4920
     attttaaaca atagacagca ctaagaaatt ctgcaaactg gaacgtggcc cacggtaggc      4980
     caatataccg gaaagggaaa atgacaaatc cccccttaaa                            5020
//
ID   R4-1_BM     repbase;    DNA;    INV; 2640 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   31-AUG-2012 (Rel. 17.08, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; R4-1_BM.
XX
NM   R4-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2640
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1052-1052 (2010).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2541
FT                 /product="R4-1_BM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="AQQLXDRIDLLKQKVAAWSXRVRRYSGRVQRYRQNRL
FT                 FVSDQKFYRSLEXXSVSAATERPAGQEMVTFWRNLWSRPVEHVEGSWMQVI
FT                 EXSCAGXPPMSPVTISKGDIKAAVCSSSHWKSPGCDGLQLYWLKSFRACHE
FT                 TLARQFQEALDTKVLPXFLTTGITHLIPKSESTADPAQYRPITCLPTTYKT
FT                 LTSVLETKISHHIDSCRVLSGAQNGCRRGSRGTKELLLIDAVAGQQVKRNR
FT                 RNFSAAWIDYKKAFDSVPHTWLKRVLELYKIDDTVRDFLGACMGQWSTMLS
FT                 LSGVRLSAVEDRIKVNRGIFQGDCLSPLWFCLALNPLSSLLEASRTGFQFR
FT                 RGGLKVSHLFYMDDLKLYAPHAAGLRRLLDITCDFSSRIRMRLGVDKCAVL
FT                 HVERGSIVSSDRLPVSDGINLRALSEGETYRYLGMSQNLGIDVAVVKQAAC
FT                 DVFYERLTKVCKSLLSGVNKTRAFNGWAMPVLLYTFGVLRWTQTELDALDR
FT                 KVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLSAKVMHNSGVCSLREYFL
FT                 SRADSVMHREVMECDKGLTPLALARDGWQSPAVLSTSDREAIWKGKELHGR
FT                 FFQALHEPHVDKEASVHWLRFGDLFGETEGFVCAIQDQVIRTNNYRKHILR
FT                 DGTADICRLCRRPGESLRHVTSGCSMLANTEYLHRHNQAARILHQELALKY
FT                 GLIEQRLPYYKYQPDAVLENDRAKLYWDRPIITDRTILANKPDIVLMDQTE
FT                 SRVFLVDITIPYDENLVRAEADKKTKYLDLAHEVTDMWRVVSTEIIPVVVS
FT                 VNGLVPKSLSKHLERLGLNKKSVVAQMQKAVLLDNARIVRRFLSQ"
XX
SQ   Sequence 2640 BP; 635 A; 662 C; 729 G; 601 T; 13 other;
     gcacaacagc tggsagatcg catagacctc ctgaagcaga aggtggctgc ttggagcaak        60
     cgmgtccgkc ggtactcggg acgagttcaa aggtatcgcc agaatcgcct cttcgtgagt       120
     gatcagaagt tctacaggtc cctmgaacas sccagtgtta gcgccgccac cgaacgtccw       180
     gctggacagg agatggtcac attctggcgc aacttgtggt caagacctgt ggagcatgtg       240
     gagggktcct ggatgcaggt catcgaggam tcgtgtgcgg gcwwaccgcc gatgagcccg       300
     gtaactatca gcaaaggtga tattaaggct gcagtctgta gttcttcgca ctggaagtct       360
     ccaggctgcg acggactgca gctttactgg ctaaaaagtt tccgggcttg tcacgaaacc       420
     ctcgccagac agttccagga agccctagat acaaaagtgc tccccgmctt cctcactact       480
     gggatcactc acctcattcc aaaatcggaa agtaccgcgg atccggcaca gtaccggcca       540
     ataacgtgtc ttcctaccac ctataagaca ctgacatccg ttctggaaac taagatctca       600
     caccacatag acagctgtcg agtactgtct ggtgcccaga acgggtgtag gcgtggtagc       660
     cgcggtacta aggaactcct cttgatcgac gcggtagctg gccagcaggt caaacgcaac       720
     cgacgaaatt tctctgccgc ctggatagat tataaaaagg catttgactc ggtcccccat       780
     acatggctga agagggtcct cgagctgtat aagatagacg atacagttcg agacttcctc       840
     ggtgcctgta tggggcaatg gagtacaatg cttagtctat ccggtgtgcg gctgtcggct       900
     gtggaagacc gaataaaggt gaatcggggt atatttcagg gtgattgtct gagtccattg       960
     tggttttgcc tggccctgaa tcctctcagt tcattactgg aggcttcgag gacaggcttt      1020
     cagttccgaa gggggggctt gaaggtgtcc cacttgttct acatggatga cctcaagttg      1080
     tacgctcctc atgctgcagg cctcaggcga ctgcttgaca tcacttgtga tttcagtagt      1140
     cgcattagga tgaggctggg agtcgacaag tgtgcggttc tccatgtaga gagagggagc      1200
     atagtctcat cggatcgttt acctgtatcc gatgggataa accttcgggc actctccgag      1260
     ggagaaacat accggtacct gggcatgtcg caaaatttag gtattgacgt ggcggtcgtc      1320
     aaacaggctg catgcgacgt gttttatgaa cgtttgacaa aagtgtgtaa gagccttttg      1380
     tcgggcgtga ataagacaag ggcgtttaac ggctgggcga tgcccgtcct gttgtatacc      1440
     ttcggcgtgc tcaggtggac tcagaccgaa ctggatgccc tggatagaaa agtccgctca      1500
     attatgaccc tccataggat gctccacccg aagtcctcgg taatgagatt gtacattccg      1560
     cggaagtgtg gtggccgggg cctacttagc gccaaggtca tgcacaacag tggggtgtgc      1620
     agtctcaggg aatatttcct atcgagggct gacagtgtga tgcacagaga ggtcatggaa      1680
     tgcgacaaag gactgacccc gctagccctg gccagagacg ggtggcaatc accggcggta      1740
     ctcagtacct ctgaccgtga ggccatatgg aaagggaaag agctgcacgg acgcttcttt      1800
     caggcactgc atgagcccca cgtggacaaa gaagcctccg tgcactggct gcgattcggt      1860
     gacctctttg gggaaaccga gggttttgtc tgtgcaatac aggatcaggt tatcaggacg      1920
     aacaactata ggaagcacat tctgagggat gggacagctg acatctgtcg attatgccgc      1980
     cgaccgggtg aatccctcag acatgtcacc tctggttgtt ctatgcttgc taacactgag      2040
     tacttgcaca gacataacca agcagccaga atcctccacc aagagctcgc ccttaagtat      2100
     ggcctcatcg aacagaggct accgtattat aagtaccagc cggacgctgt actcgaaaac      2160
     gaccgtgcca agctctactg ggaccggccc atcattacgg acaggactat tcttgcgaat      2220
     aagcctgata tcgtgctgat ggaccagacg gagtctcggg tatttctggt ggatatcacc      2280
     atcccctacg acgagaacct cgtgcgggcc gaggcagata aaaagaccaa atatttggac      2340
     ctggcgcacg aggtgaccga catgtggagg gtggtatcta cagaaataat cccggtagtt      2400
     gtgtcggtga atggtttggt ccctaaaagc ctctcaaaac atctcgagag gcttggtctc      2460
     aacaaaaagt cggtggtggc ccaaatgcaa aaagcagtct tgctcgacaa tgcccgtata      2520
     gttcgccggt ttctctccca atagtcccta acgctccggc cgattgttgc ccacctcgcc      2580
     ggagtgtgtc ctgccgtctt cccaggcgtg gcagtgttta atacacataa taataaataa      2640
//
ID   R4-1_HMe    repbase;    DNA;    INV; 3877 BP.
XX
AC   .
XX
DT   06-APR-2012 (Rel. 17.08, Created)
DT   13-FEB-2013 (Rel. 18.02, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; R4-1_HMe.
XX
NM   R4-1_HMe.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3877
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 12(8), 1674-1674 (2012).
XX
RN   [3]
RP   1-3877
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (12-FEB-2013).
XX
DR   [2] (Consensus)
XX
CC   5' flanking sequence is (TAA)n microsatellites; thus likely a
CC   Dong family.
XX
FH   Key           Location/Qualifiers
FT   CDS           181..3741
FT                 /product="R4-1_HMe_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MPGGQVHSQHHGRRCCPSNSQPSSSEDDYRTAPSTAG
FT                 SEEGMSESEGPALRPRRRADIPPSEGLEPGVSRMLNKAPATGGKVPRMRWS
FT                 QQLNESVMRAYYRATEGGTNLTAYRSRLLSMFQELEPTATVTAQRLSDRVR
FT                 IIQRRHLLDESVLERLRLSFQQVNTTNNNSCDIRSQFQHANIESQGNIELS
FT                 VSAQDDERLRRSLKDAILEYGSIPVNLRPKLPRLPMHRRNIALVRILDQHL
FT                 PSHFNNCNDLTDTHSLLYCGAVAVCRVAGVQFPNKGGTKASKHTVPAWQYD
FT                 TEKRINLTRILIGKLISFKSGNRRPRVMRFVAEAFAGTNLKPSEYMANVTN
FT                 RIDFLKQKLYALAKRIRRYRERWDRYNQNSAFQKNQRSVYRKWERSGDSVV
FT                 NCEIPNPDASAGFWRSIWSAPVEHTEGEWFCDIAKNCENIIPMPSIKISEI
FT                 DVRCAIRYASNWKCPGLDGLHNFWLKWFRSSHSVFATQFQDALDSGSLPTF
FT                 LTTGVTFLSYKSGCTTEPKNYRPITCLPTIYKLLTSILNKKITGHIVRNKI
FT                 LAPTQNGCKAGGRGTKELLLIDTTISQQVRRNRKNLTTAWIDYKKAYDSVP
FT                 HTWLLKVLELYKIDITLRSFLEACMGQWVTVLRHLGECDIPATSEPIRIKR
FT                 GIFQGDSLSPLWFCLALNPLSTLLEDSGLGFRLRRGGKVISHLLYMDDLKL
FT                 FASKRSDLMRLLKVTQTFSSDIRMEFGVDKCASMHVVRGSVIRSDNICISD
FT                 SVSFRTLGEGETYKYLGMSEALGIDERSIKQLVKERFFSRLKKVLGSLLSG
FT                 GNKVRAFNGWVMPLLAYTFGIVRWTQTELDSVDRQIRKLLTTYRMHHPRSS
FT                 VMRLYIPRKCGGRGFLNVKNLHNHEVCSLREYFLKIDVDMHKDVVTVDKGL
FT                 TPLSLGKENWRRPVVLTTSDRMAVWKSKELHGRFHRALVGQDVDTASSLSW
FT                 LQFGDLFGETEGFVCAIMDEVIKTRNYQRHIMKDGTIDICRACHRPGESLR
FT                 HIVSGCSHLANGEYLHRHNQVAKIIHQQLALQYGLVELEVPYYRYNPMSVL
FT                 ENSCALLYWDRSIITDRYIVANRPDIVLVDRVARRAVIVDVTIPHDENLVK
FT                 AEKEKQSKYLDLAHEITAMWDVNATIIVPIVVSVNGLIAKSLDQHLKRLSL
FT                 SCWIKNRIQKAVLLETARIVRRFLSLEP"
XX
SQ   Sequence 3877 BP; 1099 A; 765 C; 942 G; 1071 T; 0 other;
     caaccctagc aaccgtcaaa caaacatgtc aggaaaaatt ttcactgttg atataaatta        60
     ataaataatt tagaaaaagt acaaaaccat aagaaaattg gatacaaaaa tatgatctgg       120
     attactagaa ttaaaacaaa tattggtaaa agatggcaca agagtaaaaa atagtgacgg       180
     atgccaggag gacaagtgca ctcccaacac cacgggcgga gatgttgccc ttcgaattcg       240
     caaccgtcgt cgtcagaaga cgactatcgc actgcgcctt cgactgcggg ttcggaggaa       300
     ggaatgtcag agtcggaagg gccggcttta agaccacgcc ggcgcgccga catcccacca       360
     tcggagggtt tggagccagg agtgtcgagg atgctcaaca aggctcccgc taccggtggt       420
     aaagtgcctc gcatgagatg gtctcaacag ctgaatgaga gtgtcatgcg tgcgtactat       480
     agggcaacag aggggggaac taacctcact gcgtatcgtt caaggttact gtctatgttt       540
     caggagcttg aaccaacagc gaccgttact gcacagcgac tgtcggacag ggtgcggatc       600
     attcagcgac gtcatctgct ggatgaatcc gtactggaaa ggctacgctt gagctttcag       660
     caggtcaata ctaccaacaa caacagttgc gacatccggt cacagttcca gcacgccaac       720
     attgagtcgc aaggtaatat tgagttgtct gtgagtgccc aggatgatga gcgattgagg       780
     agaagcttga aagatgctat tttggaatat ggttccattc cggtaaatct cagaccaaaa       840
     ttacctcgtt tgcctatgca tagacgtaac atagcactag tgaggattct agatcaacat       900
     ttgccaagtc attttaacaa ctgtaacgat cttactgata cgcattcatt gttgtattgt       960
     ggtgctgtag ctgtatgtcg tgttgctggt gtacagttcc caaataaagg gggtaccaag      1020
     gcatcaaagc atacggtgcc ggcatggcag tacgacactg aaaagcgtat caatctgact      1080
     agaatcctca ttggcaagct aataagtttc aagtcgggta atcgtcgacc gagggtcatg      1140
     cggtttgtgg cggaagcatt tgctggaaca aatttaaagc ccagtgagta tatggctaac      1200
     gtcacaaacc gtattgactt tctgaaacag aaactctatg cattggcaaa acgcattaga      1260
     agatatagag aacgatggga tcgatacaat cagaatagtg cctttcaaaa gaaccaacgg      1320
     agtgtataca ggaaatggga acgttctggg gatagtgtgg ttaattgcga gatcccgaat      1380
     ccagatgcta gtgctggttt ttggcgtagt atatggtcgg ctcctgttga acacactgag      1440
     ggtgaatggt tttgtgatat tgcgaaaaat tgcgaaaata ttataccaat gccatcaata      1500
     aaaataagcg aaattgacgt gaggtgtgct attcgttatg ctagtaattg gaaatgtccc      1560
     gggctagatg ggttgcataa tttctggctg aagtggtttc gcagttcaca ttccgttttc      1620
     gcaacacaat tccaggatgc ccttgactct ggatcgttac caacattttt gacaacaggt      1680
     gtgacattcc tgtcatacaa atccggatgt accacggagc ctaaaaacta tcgcccaata      1740
     acatgcttac ctaccatcta taagctcctt acatctattc tgaataaaaa aatcacagga      1800
     catattgttc gtaacaaaat tttggcaccg actcagaatg gatgtaaggc tggtggccgt      1860
     ggtacaaagg aacttcttct cattgacaca actataagcc aacaggtaag gcggaacagg      1920
     aaaaatctca ctactgcttg gatagactat aagaaggcat atgattcagt gccacatact      1980
     tggctcttga aggtcttgga gttatataag attgatatta ctttgagatc atttttggag      2040
     gcttgtatgg gacaatgggt cactgtcctt cgtcatctag gggagtgtga tattcctgca      2100
     acgtctgaac cgataaggat aaagaggggt atatttcagg gtgacagtct gagtccttta      2160
     tggttttgcc tagctctgaa tcctcttagc actttgttag aggattcagg tttaggcttt      2220
     cgtcttcgcc gggggggtaa ggtcatatct cacttgctgt acatggatga tctgaaatta      2280
     tttgcgtcaa aacgttctga tcttatgcgg ctactaaagg taactcaaac ttttagtagt      2340
     gatataagaa tggaatttgg cgtcgataaa tgtgctagca tgcatgtagt gcgggggagt      2400
     gtgatcagat ctgataatat ttgcatttca gattctgttt ccttcagaac tcttggtgaa      2460
     ggtgagactt ataaatatct tggaatgtct gaagcattgg gtattgatga gcggagcata      2520
     aagcaattgg tgaaggagcg tttctttagc cgcctgaaaa aagtgcttgg cagcctttta      2580
     tctggtggca acaaggtgcg tgctttcaac ggttgggtta tgccgctttt agcctatact      2640
     tttggcattg taagatggac acagactgag ttagactccg tagatcgcca aatacgtaaa      2700
     ttgttgacga cataccgaat gcaccatccg cgttcgtctg taatgagact gtatatcccg      2760
     cgtaagtgtg gaggtcgtgg ctttttgaat gtcaagaacc tccataacca cgaggtatgc      2820
     agtcttagag aatattttct caagattgac gtggatatgc acaaggatgt ggtaacagtt      2880
     gacaaaggcc ttactcctct ttccttgggc aaagagaact ggcgtcggcc tgtagtactt      2940
     actacttctg atcgcatggc tgtatggaag agcaaggagc tgcatggtag attccataga      3000
     gccctagtgg gccaggacgt ggatactgct tcatcattat cttggttaca gttcggggat      3060
     cttttcggag aaactgaagg ttttgtctgt gcaattatgg acgaagttat caagacacgg      3120
     aactaccaga gacatattat gaaagatggc actatcgaca tctgccgggc gtgtcatcga      3180
     cctggggagt ccctcagaca tattgtctct ggttgttctc atcttgctaa tggcgagtat      3240
     ttgcatagac acaatcaagt agccaagata atacaccagc aacttgctct tcaatatggc      3300
     cttgtagaat tggaggtgcc ttactacagg tacaatccca tgtctgttct tgaaaatagc      3360
     tgtgctttgc tctactggga tcggtctatt attactgaca ggtatattgt tgccaataga      3420
     cctgatatag tactagtaga ccgagtggcg cgccgcgcag tgattgttga cgttactatc      3480
     ccacatgatg aaaatctcgt gaaggccgaa aaagaaaaac aatctaaata tttggaccta      3540
     gcccatgaga ttaccgccat gtgggatgtc aatgcgacta tcattgtgcc gatagtggtt      3600
     tcggttaacg gtttaatagc gaaaagcctc gaccaacacc ttaagaggct atcgcttagc      3660
     tgttggatca agaaccggat acagaaggca gtattacttg agacggcacg tattgtgcgg      3720
     aggttcctct ctctggagcc ctagccaccg atggcttgga cccttgtccc gccctcggaa      3780
     gagtggtttt tttatatttt taaatgtatc ttttttataa taatttatat ttaaaaatgt      3840
     aaaattgatt cgctaattta ataaaagtat attctgt                               3877
//
ID   R4-1_TCa    repbase;    DNA;    INV; 1721 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.04, Created)
DT   05-APR-2009 (Rel. 14.04, Last updated, Version 3)
XX
DE   R4-type retrotransposon: consensus.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   R4-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1721
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Tribolium castaneum.";
RL   Repbase Reports 9(4), 740-740 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..1608
FT                 /product="R4-1_TCa_1p"
FT                 /translation="MKAINTFAVPVLVYSFGIIKWTNTDINNINIKIRTLF
FT                 TRFRKHHPKSAIERFSLSREYGGRGFLNLQNLHTRQISSLKKYFLNRSNKN
FT                 ILFKAICLSDHNFTPLNLSNPNINEIISDENSIIETLKEKPLHGRFFKELD
FT                 NSNYIDKKASHLWLTKTNIFSETEGFIFAIQDQVINTKNYQKFIXKKNNDV
FT                 CRLCGTHSETIQHLISSCQVLVASDYKVRHDNVAKIIHSELAFNSGLIQTK
FT                 SPYYKYEPDSFIENDNFKLYWDRTVLTNLTITANRPDIIFISKLERHAFII
FT                 DIAVPNTHNIQETYNTKISKYMILASEIKNIWNLEKIKIVPIIISAVGVVP
FT                 KNLKQNLELLKLSSNLIVEIQKSVLLKTCNIVRNFQHHYLIAISVMVISCL
FT                 TXV*"
XX
SQ   Sequence 1721 BP; 681 A; 226 C; 229 G; 582 T; 3 other;
     agctataaat ccactttctg atatttcgaa ttcatctaat tatggtttca gtttaaaaaa        60
     taataaaaca gttgttgcca aattgaatca tctaatgtat atggatgata ttaaattata       120
     tgctgcaacc gagaaacaat tgaatttatt acttaaacta acagaaaatt tttctttaga       180
     tattggtatg tcatttggag tagataaatg caaaattcta gcaattacga aggaaatttc       240
     aaaaaattaa attttatctg aggtcaagaa attgaacaat aatggtggta taaatactta       300
     ggattcaaac aatcaaatag aatatcacat agtgatacaa aagawaaact agttgatagt       360
     tttatcacga gatgtagaca attagttaaa acacatttaa attcaaagaa tcttatgaag       420
     gcaataaata catttgctgt acctgtttta gtttattcat ttgggattat taaatggaca       480
     aatactgata ttaataatat taatattaaa atcagaacac tatttactcg ttttaggaaa       540
     caccatccaa aatcagctat tgaaagattt tctttatcta gagaatatgg aggtcgaggc       600
     tttctgaatc tacaaaattt gcatacaagg caaatttctt ctcttaaaaa atacttttta       660
     aatcgtagta acaaaaatat tctattcaaa gccatttgct taagtgacca taattttact       720
     ccattaaatt taagtaatcc caatataaat gaaataattt ctgatgaaaa ttcaattatt       780
     gaaactttaa aagaaaaacc tttacatggt agatttttca aagagttaga taacagtaat       840
     tatatagaca aaaaagcttc acacttatgg ttaacaaaaa ctaatatttt ctcagaaact       900
     gaaggtttta tttttgcaat tcaagatcaa gtaattaata caaaaaatta ccaaaaattt       960
     attawaaaaa aaaataatga tgtttgcaga ttgtgtggaa ctcattctga aacaatacaa      1020
     catctaattt cttcttgtca ggttctagtt gcatcagatt ataaagtaag acatgataac      1080
     gtagctaaaa taattcattc tgagttagct tttaattcgg gtttaattca aaccaaatct      1140
     ccttattata aatatgagcc tgactcattt atagaaaatg acaattttaa actctattgg      1200
     gataggacag ttttaactaa tctaactatt actgctaata gaccagatat tatctttatt      1260
     tctaaattag aaagacatgc atttatcata gatattgctg ttccaaatac acacaacata      1320
     caagaaacgt acaatacaaa aatatctaaa tacatgattt tagctagtga gataaagaat      1380
     atttggaatc ttgaaaaaat aaaaattgtg ccaataatta tttctgcagt aggagtggtg      1440
     ccaaaaaatt taaagcaaaa tcttgaactt ttaaaattaa gttcaaattt aattgttgaa      1500
     attcaaaaat cagttctttt aaaaacgtgt aatattgtta gaaattttca acaccattac      1560
     ttgatagcaa tatccgtaat ggtgatttct tgcctgacta rggtttaaac ccccgggtca      1620
     gtggagtgta aaagttgcca gataattatg atcaaagtaa ttgtctgtca agtttttctc      1680
     atacttttgc cgggtcgaaa cgataataat aataataata a                          1721
//
ID   R4_Hmel     repbase;    DNA;    INV; 4364 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a R4 element from Heliconius melpomene.
XX
KW   R4; Non-LTR Retrotransposon; Transposable Element; R4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4364
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           101..4204
FT                 /product="R4_Hmel_1p"
FT                 /translation="ITYTANMALVTLFMENMENKRYNLRPLPGGRRGASGA
FT                 NAGCHSMRTVGDGGLSRRVPLEKNVTAEQSSSPLTSSSSHSPVSSIPSPSS
FT                 TRTLLNSPNSSPTSSHSSLVIRSADVVQEALANYPAPTAGSIRARKKWTDI
FT                 MNRYIWRTYLIITKCETTLLNNYLEPLHQEFSSKFPEMQVTRQRIGDQRRA
FT                 IIRNKLLSDDTLAQILIEVKELLQIGDQPLTQNNIHSTQLSHSNTRIKWSN
FT                 ELNEEIVKCYFEVTLLEVNKTSYRKNLYSLFISRNPHLSHLTEQRIADQRR
FT                 LIFMNKSVHNDRIIELKREVEIKLANSNSLTKNITESNSPSSQTNEINDSA
FT                 YVQSNLQPVEPLDQHCINRHNLIEKHYVEQEFNNALIQFNNTNPETRPYIP
FT                 RQKSSRKFSQIVSFLNSEVLPKHLNNELDFNALHNIIYTAXYTASLCNGTK
FT                 FSFIDNYRPRNSKPSWQRRLESRIDKYRLQIGRLTQYISGNRNRKILKTVE
FT                 EIKTQYKIHSHHEEPNTELPHFLDTLKQKLNATSNRLRRYLTCTKRKQQNN
FT                 TFVNNEKHFYRTLSSTNQNTTTQLXEHPTENNLQQYWANIWETSIEHNADA
FT                 EWLNKIPDXEINXMKFKDISIETFNQIIQRTHNWKAPGTDNIHNYWYKKLT
FT                 CTHSLLLKHINQFIQSPCTLPLFITNGITYMLPKGLDPTNPANYRPITCLQ
FT                 TIYKIITACITDIIYKHIDQNNILAEQQKGCRKNSQGCKEQLTIDAIVMKQ
FT                 AHNKNXNTMYIDYRKAFDSVPHSWLLYILKKYKIHPILITFLSSVMLSWKT
FT                 RLKLINNNETLITDWIKIQRGIFQGDALSPLWFCLALNPLSELLNNTNTGF
FT                 KLKHNNTYHIISHLMYMDDIKLYASNNKELKILADLTQSFSTDIRMEFGIE
FT                 KCKVHSIKRGKSQQNTYILNTGEQIESMDENSTYKYLGFQQAKQIQQKQTK
FT                 IELTNKFKFRLNQILRSQLNSRNIIKAINTYAIPILTYSFAIINWSQTDLS
FT                 NLQRIINTHMTTHRKHHPKSCIQRLTISRLDGGRGLIDIRNLHNNLVTKFR
FT                 NYFYAKAEISELHKFIVNIDNKYTPLNLNDRNIQLNQTLITKQQKIEAWSL
FT                 KSLHGRHLADLSQTHVDKVASNEWLRRGDLFPETEAFMMAIQDQVIDTRNY
FT                 QKHIIKRPNMVNDLCRRCYSSPETIQHITGACKTIVQTDYKHRHDQVAAII
FT                 HQHLAFKHSLITQAQKTPYYKYSPQAILESTNFKLYWDRTIITDKTVHYNR
FT                 PDILLHDKVKXSVYLIDIAIPNTHNLASTFSNKIDKYTDLTIELKSQWKVQ
FT                 SVTTVPIVLSTTGVVPHTLHTSLETLGIHRLSYILLQKAAILNTCRIVRKF
FT                 LSSNN"
XX
SQ   Sequence 4364 BP; 1726 A; 873 C; 606 G; 1147 T; 12 other;
     ataaataata ataataataa taataataag ccccctaaaa tccaaccata cgtccgagtc        60
     gaacatctga ttctcgtggg gggcggacac gtgaaaataa attacttaca cggctaacat       120
     ggctctggta acccttttta tggagaatat ggaaaataaa agatataatt tgcggccgct       180
     acccgggggt cgccggggcg catctggagc taacgctgga tgccacagca tgcgaaccgt       240
     tggcgacggg ggactgagca ggcgggttcc cctcgaaaaa aatgttacag ccgaacaatc       300
     atcctcacca ctcacttctt cttcctctca ttcaccggta tcaagcatac cctcaccatc       360
     ctcaactcgc accctattaa attcccctaa ttcatcacca acatcatcac attcatcact       420
     ggttataagg tcagcagatg ttgtgcagga ggcacttgcc aattaccctg cacccactgc       480
     gggctctatt cgtgcgcgaa aaaaatggac cgacataatg aaccgttata tttggcgcac       540
     atatcttatt ataacaaaat gcgaaaccac gttattgaat aattatttag aacccctaca       600
     tcaagaattt agtagtaaat ttcccgaaat gcaggtaact agacaacgta taggagatca       660
     acgtagagca ataataagaa ataaactact atcagatgat accttagctc aaattttaat       720
     tgaagtaaaa gaactattac aaatcggtga tcaaccactt acacaaaata acattcattc       780
     aactcaactt tcacactcaa acactagaat aaaatggtca aacgaactta atgaagaaat       840
     tgtcaaatgt tactttgaag tcaccctact tgaagttaat aagacttctt atcgtaaaaa       900
     cctgtacagt ttatttatat ctagaaatcc acacctatca caccttacag aacaaagaat       960
     agctgaccaa agacgactaa tatttatgaa caaaagtgta cacaacgata gaattattga      1020
     attaaaaaga gaagtagaaa ttaaattagc taacagtaat tctttaacaa aaaatattac      1080
     agagtcaaat tctcctagca gtcaaacaaa tgaaataaat gattctgcat atgtacaaag      1140
     taatttacaa cccgttgaac cactagacca acattgtata aatagacaca atttaataga      1200
     aaaacattat gttgaacaag aatttaataa tgctttaatt caatttaaca atacaaatcc      1260
     tgaaaccaga ccctatatac caagacaaaa gtcatcgcgt aaattttccc aaattgtcag      1320
     tttcttaaat agtgaagtac ttccaaaaca tttaaataac gaattagatt tcaatgctct      1380
     tcataacatt atatatacmg ctgyctacac tgcatctctg tgtaatggaa caaaattcag      1440
     ttttattgat aattaccgac ctcgtaacag caagccatcg tggcaaagaa gacttgaaag      1500
     tagaatagac aaatatagat tgcaaatagg tagacttaca caatatatat caggaaatag      1560
     gaaccgtaaa atattaaaaa ctgtagaaga aataaaaaca caatataaaa ttcattcaca      1620
     tcacgaagaa cctaatacag aattaccaca tttcttagac acactaaaac aaaaattaaa      1680
     tgcaacttcg aacagactta gaagatattt gacatgtaca aaacggaagc aacaaaataa      1740
     tacattcgtt aataacgaaa aacattttta tagaactcta tctagcacaa accaaaatac      1800
     cacaacacaa ttacwagaac atccaacgga aaataatttg caacaatact gggccaatat      1860
     ttgggaaact tcaatagaac ayaatgcaga cgcagaatgg ttaaataaaa tacctgackt      1920
     agaaataaat ktaatgaaat tcaaagatat atccatagaa acattcaatc aaatcatcca      1980
     gcgaacacac aattggaagg caccgggaac cgataatata cacaactayt ggtacaaaaa      2040
     gctaacatgc actcattcac ttcttcttaa acacataaac cagttcatac aatcaccttg      2100
     cacactacct ttatttataa caaacggaat aacgtatatg ttaccgaaag gcttagatcc      2160
     cacaaaccca gctaactata ggccaataac atgcctccaa acgatatata aaattatcac      2220
     tgcgtgtatt actgacataa tttataaaca tatcgatcaa aataacatat tagctgaaca      2280
     acagaaaggc tgtaggaaaa atagtcaagg gtgtaaagag cagcttacta tagacgcaat      2340
     agttatgaaa caggcacata ataaaaatah taatacratg tatatagact acagaaaagc      2400
     atttgattca gttccacaca gttggttact atatatttta aaaaagtaca agattcaccc      2460
     cattctaata acatttttaa gctccgtyat gctctcatgg aaaactagat taaaattgat      2520
     taacaataat gaaacactga ttactgattg gattaaaata caacgaggca tctttcaagg      2580
     tgatgcgctg agtccattat ggttctgtct agcgttaaac cctctctctg aattgcttaa      2640
     taataccaat acaggattta aactaaaaca taataacaca tatcatataa tttcacattt      2700
     aatgtacatg gacgatatca aactatacgc cagtaataat aaagaactaa aaatactagc      2760
     cgacctcaca caatccttct ctacagacat acgcatggaa tttggaattg aaaaatgcaa      2820
     ggtacattca attaaacgtg gcaaatcaca acaaaataca tatatactta acactggtga      2880
     acaaattgaa tcaatggacg aaaatagcac gtataaatac cttggatttc aacaagctaa      2940
     gcaaatacaa caaaaacaaa ccaagataga actaaccaat aaatttaaat ttcgtttgaa      3000
     tcaaatttta agatcacaat taaactcacg taatattata aaagccatca acacatacgc      3060
     aataccgatc cttacttact cttttgctat aataaactgg tctcaaactg atttatcgaa      3120
     tctgcaacgt ataataaata cacacatgac tacacatagg aaacatcacc ctaaatcatg      3180
     tatccagcgt ctaactatat cacgtctgga tggaggacga ggtctcattg atattcgtaa      3240
     cctacataat aatctagtga ctaaattccg aaattacttt tacgctaagg ctgaaattag      3300
     tgaactacac aaattcatag ttaatataga taataaatat acaccactta atttaaacga      3360
     tagaaatata caactaaatc aaactttgat aactaagcag caaaaaatag aagcatggtc      3420
     tttaaagtca ctacacggta gacatctagc cgatcttagc caaactcacg tcgacaaagt      3480
     tgcgtcgaac gaatggctac gacggggaga tctcttccca gagacggaag ccttcatgat      3540
     ggctattcag gaccaagtaa tagacactag gaactatcaa aaacacatca taaaaagacc      3600
     aaatatggta aacgatttat gcagaagatg ctattctagt cctgaaacaa tccaacacat      3660
     taccggagcc tgtaaaacca tagtacaaac cgattacaaa catagacatg atcaggtcgc      3720
     tgcaattatt catcaacacc tagcatttaa acattctctc atcacacaag cacaaaaaac      3780
     tccctattac aaatattcac ctcaggctat tttagaatct acaaatttta agctgtattg      3840
     ggatcgtaca atcatcacag ataaaaccgt acactacaat agaccggata ttttacttca      3900
     tgataaagtw aaaawttctg tatacttgat agacatagcc attccaaata cacacaatct      3960
     tgcatccact ttttcaaaca aaatagataa gtatacagat ttaaccatag agctcaaaag      4020
     tcaatggaaa gtccaatccg tcactacagt accaatagtt ctttcaacaa ccggagtagt      4080
     acctcatacg ctacacacga gtctggaaac tttgggtatt caccggttaa gttatattct      4140
     tttacagaaa gccgcaatct taaatacatg ccgtatagtt aggaagtttt tatcatcaaa      4200
     taattaactt attgtcagaa ttccttacta gtaataataa ttatcgctga aaatctccac      4260
     ccaaatattg cttggctata tgctcgcaat ttttggttaa cgtaccccaa tgatttggga      4320
     gaacaaaaat ggtaaaacta taataataat aattatatta atat                       4364
//
ID   R6Ag1       repbase;    DNA;    INV; 5075 BP.
XX
AC   AB090817;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon R6Ag1 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   gag-like domain; reverse transciptase; R6Ag1.
XX
NM   R6Ag1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090817; Positions       1    5075.
XX
FH   Key           Location/Qualifiers
FT   CDS           741..1772
FT                 /product="R6Ag1_1p"
FT                 /translation="MMDFLDEVMSEFRRYRAVNRMQQVLDRQTQTSFDGND
FT                 GFGPQTRKGRRPVADDQQPGPSGLQRLQQQQQQPSRLTPVREAVENIPSPR
FT                 NGPNINEGSINKRKKKKSKKKQNKPRKRPEALLISDCTSEELAKLLKEMKQ
FT                 SDALKSVGETISKVRRAQNGGMLLELKQGSSASAIAPKVKEAVKGKASVRT
FT                 LAPSKMIEIMHLDEITTPEEVAESVKAQLNIEIEIDRIKMKKGRAAGTQWA
FT                 RINVSLPDFQSFLNLGKLKVGWSICHIREVMEEQKCYKCWKVGHTSYHCRE
FT                 PDRSNLCWKCGLSGHKKQACTNSVKCLDCGTRSQNLHATGSYMCPRRRTIR
FT                 S"
FT   CDS           1775..4801
FT                 /product="R6Ag1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVRLLQHNQNHSYAAFQLMWQTIREESADIVLIADPY
FT                 LATTNVKVLRNDDNTAAVVVNADLPVKVVSKALKGLMVVDIGDMRVVSVYA
FT                 PPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQK
FT                 RRGELVLSTFAQIDAILLNDGSTPTYVGPGRTSVVDLTFASRTVARSFKWE
FT                 VLSSYMNSDHRAIRIDLETQSVRNLSRPITGWSIKYFSKDIFEVMMQAAVD
FT                 TEVTTSEDLMRILVTACNATMTKRKRYTPNKSAFWWTLEIEALRKECKHRD
FT                 RLAQRAFHTDLYSTFRDEFKVARNALKRLIKHTRQRKWKEFLGTANNASFG
FT                 IVYHTFKKVAEGSIGPRTMTLDEFREVVSELFPTHPNTVWPDYRIDQPREF
FT                 ERITNDEILAVARRLPNKKAPGPDGIPNEALKVGMLTATDAFCRVYQGCLE
FT                 NAKFPDEWKRQRLVLIPKPNKPPGEPGSVRPICLLDGAGKGLERIIVQRLN
FT                 AHIEEVNGLSDDQFGFRSRRSTVDAIQRVVDIVSVARSRNRYSGRYCAVVT
FT                 LDVTNAFNSASWLAIANALQRINTPKYLYDIIGDYFRNRVLMYDTTDGPAE
FT                 IAVTSGVPQGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADDIVLLVEGNC
FT                 VDDIEILVSSQIRIIDRWMTDNGLKIAPTKTEFIMVSSHQRIQHGAIRVGD
FT                 HVVHSSRTLKYLGMVLDDRLEYTSHIRYAVERATKLWTTLVRMMPNKAGPS
FT                 SNVRRVIALTVVAKVRYASPIWCHTLRFANRRQWLRRFYRPVVQRVISSFR
FT                 TTSHDAVCVLAGMIPLHLLLDEDSRTFHRRRAENIAGSVARNMERVTTMER
FT                 WQREWDESVHGRWTYRLIPDVNRWISRRFGGVDFFLSQFLSSHGFYAYQLH
FT                 RMQLTGSPLCDACEEPEDAEHTIFHCVRHRELIIRLQHQVDEELTPENIIE
FT                 VMSANRYNWSMVHQAVRTIMIRQQHRRHVIERGERRALLANIQLALQSSDS
FT                 DDE"
XX
SQ   Sequence 5075 BP; 1417 A; 1080 C; 1398 G; 1179 T; 1 other;
     gcccggcaaa gtccgaccac cacctccacg cggtgccggg cggggtaggg gcccgtcatt        60
     aagttgacga ggccccgagc taacggtggc ggtgaagacg gcgttgagca tgacaacgtc       120
     gcaggggagg gtgtggtgtt aagtcgccac accctacatt ctgtcaagtg ggatactgaa       180
     ctcgagagga taatacctct gcgcggatta gactagggta cggtttatgg aataactagg       240
     atgtacacgg gctggcggat gaacccgccg aacccttagt aaagcagggt gaaacctgct       300
     tgaaacgggg gagggctaag ggggattctg tcaccgctct attaaaactt agcaagtctt       360
     aggtagcgct ccaagactgt cgccatacga tacgctctat ggcaaatgca ggtgtgggtg       420
     ggttcagccc cactttgctc cggttcggca ctgagcccgt cgtctcataa gggcgcgggc       480
     caacccttgc gtggagctcc ctgtttcata gccacccacg gaaccaaata ggagactgca       540
     taaacagacg cggatagcgg gcctgagttt gagcccaata gaatgagtaa cactaaaact       600
     aagaaggtca aaaaggccaa gggggttgac aagaaagatc cggaccaagc gttcatggat       660
     cttcaagatc ggatggaggc tatgcgtttg ggataagtaa actcgatgat gagtctyccc       720
     attttacgct agtaacggta atgatggact tcctcgatga ggtaatgtcc gaatttcgaa       780
     ggtacagagc cgttaatcgc atgcagcagg tcctcgaccg tcaaacgcaa acgtcgtttg       840
     acggtaacga tggattcggg ccgcaaacgc gaaaaggcag aagaccagtg gctgatgacc       900
     aacagcctgg tccaagtggg ttgcaaaggt tgcaacaaca acaacaacaa ccatcgaggt       960
     tgacccctgt tagggaagcg gtggaaaata ttccaagtcc gagaaacgga ccgaatatta      1020
     atgagggtag cattaataag aggaagaaga agaagagcaa gaagaagcag aataagccca      1080
     ggaagcggcc tgaggctctg ctgatatcgg actgcacttc cgaggagctg gcgaaattgc      1140
     tcaaggaaat gaagcagtcc gatgctctta aatcggttgg agagacaatc tctaaggtcc      1200
     gacgggccca gaatggtggc atgttgctag aattgaagca gggtagttct gctagtgcaa      1260
     ttgccccaaa ggttaaggaa gcggtgaagg gcaaggcgtc agtgagaacg ctagctcctt      1320
     ctaaaatgat tgagatcatg catctcgatg aaattaccac cccagaggag gttgcggagt      1380
     ctgtcaaagc acagctcaac atcgagatcg aaatagatcg tatcaaaatg aagaaaggcc      1440
     gcgcggccgg tacgcagtgg gcacggatca acgtatcgct gccagacttt caaagcttcc      1500
     tgaatttggg aaagctgaaa gttggttggt cgatatgcca tatccgtgag gtaatggagg      1560
     agcagaaatg ctataagtgt tggaaggtag gccatacgag ctaccattgt agggaaccag      1620
     acagaagtaa tctgtgctgg aaatgcggtt tgagtggaca caagaagcaa gcttgtacca      1680
     attctgttaa gtgtttggat tgcggtacga ggtcacagaa ccttcacgca acgggcagtt      1740
     acatgtgtcc ccgtaggcga acgattagat cttaatggtt aggttgttac aacataacca      1800
     gaatcatagt tatgctgcat ttcagttaat gtggcaaacg attagggaag aatctgcgga      1860
     tatagtgttg attgcagatc cgtatctggc aacaacaaac gtcaaagtgt tacgcaatga      1920
     cgataacaca gcagcggtag tggttaacgc ggacttacca gttaaggtag tcagtaaggc      1980
     tctgaagggt ttaatggtag ttgacatagg tgatatgcga gtggttagcg tttacgcgcc      2040
     acctagattt agtatggaag agttccagat catgttggat aacacggtaa tggccgtaac      2100
     cggtatccac aaattcgtta tcggggggga cttcaacgct tggtcagcaa gttggaacaa      2160
     ccaacttggc gagcgtggag aaacccagaa acgaagaggt gagttggtct tatcaacctt      2220
     tgcgcagatt gacgcaattt tattgaacga cggcagcacc ccaacttatg ttggaccagg      2280
     gcgcacgtca gtagttgatc ttacttttgc gagcagaaca gttgcaagat catttaagtg      2340
     ggaggtgtta tctagctata tgaactctga tcatcgtgcg atacgcatag atcttgagac      2400
     gcaaagcgtg cgtaatctgt cccgacccat aacgggatgg agcatcaagt attttagcaa      2460
     agatatattt gaagttatga tgcaagccgc tgttgatacc gaggtcacaa caagcgaaga      2520
     cttaatgcgt atacttgtca cggcgtgtaa tgcgacgatg actaagcgta agaggtacac      2580
     tcctaacaag agtgcatttt ggtggacgct cgagattgag gcacttcgca aagagtgcaa      2640
     acaccgcgat cgattagcgc aaagagcttt tcatactgat ctctattcta cttttaggga      2700
     cgagttcaag gtggcaagga atgccctcaa gcgattgatc aagcataccc gacagaggaa      2760
     gtggaaagag ttcctgggaa cagcgaacaa cgcatcattt ggtatagtat atcatacgtt      2820
     caagaaagtg gccgagggtt cgattggacc ccgaactatg acattagacg agtttaggga      2880
     agtggtgagc gagctttttc ctactcaccc aaacacggtg tggcctgatt atcgtatcga      2940
     tcagccacga gagtttgaaa ggattactaa tgatgagatt cttgcggttg ccaggagact      3000
     acccaacaag aaggcgccgg gaccagatgg tatcccgaat gaggcgctga aagttggtat      3060
     gttgactgca accgatgcat tttgcagggt ttaccaaggc tgtttagaga acgcgaagtt      3120
     ccccgatgag tggaaaaggc agaggttggt gttaataccg aagccgaaca aaccaccagg      3180
     ggaaccgggt tcggttcgcc ccatttgtct attagacggg gcaggtaaag gtctagaacg      3240
     catcatagtg caacggttaa atgcacacat cgaggaggtc aacggactgt ctgacgacca      3300
     atttggtttc agaagtcgtc gatcaacagt tgatgcgatt caacgggtag tggacattgt      3360
     ttcggtagct agaagcagaa accgatacag tggacggtat tgtgcagttg ttacattaga      3420
     tgttactaat gcttttaaca gtgcttcgtg gttggcgatt gcaaatgcat tacagagaat      3480
     taacactcct aaatatcttt atgatatcat tggtgattat tttaggaatc gtgtgctgat      3540
     gtatgatacc acagatggac cggcagagat tgcagtcaca tcgggtgtac ctcaaggctc      3600
     ggtactcggc ccaacgttat ggaatctcat gtacgacggt gtcctacgag ttgcaatggt      3660
     ggaaggtgca cggattatcg gctatgcaga cgatatagtg ttgttggtgg aaggtaattg      3720
     tgttgatgat attgaaattc tcgtttccag ccagattcgc atcatcgaca gatggatgac      3780
     cgacaacgga ttaaagatag ccccgaccaa gaccgagttt attatggtca gttcccatca      3840
     gaggatacag cacggggcta tcagggtagg tgatcacgta gtacattcgt cgcgcacttt      3900
     aaagtatttg gggatggtct tagatgaccg cctcgaatac acttcacaca tcaggtatgc      3960
     ggtggagaga gcgacgaagc tatggaccac cttggtaagg atgatgccta ataaggcagg      4020
     tccaagtagt aatgttaggc gagtaattgc tcttactgtt gtggcgaagg tccggtatgc      4080
     ctcgcccatt tggtgtcata cccttagatt tgctaaccgt agacaatggc tacgtcggtt      4140
     ttaccggcca gtagtccagc gagttatctc ttctttcagg acaacttctc acgatgcagt      4200
     ctgcgtgctt gcgggaatga tcccgctgca tctcctcctg gacgaggact ccaggacttt      4260
     tcatcggaga cgagcagaga acatcgccgg atcggttgca cgtaacatgg aacgtgtcac      4320
     aactatggaa cgatggcaac gagaatggga tgagagtgtt cacggtcggt ggacataccg      4380
     tctcataccc gacgtcaaca gatggataag tagaagattt ggtggtgtag atttctttct      4440
     ttctcagttt ctttccagcc atggcttcta cgcctaccag cttcatcgga tgcagttaac      4500
     gggctcgccg ctatgcgatg cgtgcgagga acctgaggac gccgaacaca cgatattcca      4560
     ttgtgtacgt catcgtgaac tgatcattag acttcagcat caagtcgacg aggagttaac      4620
     gccggagaac atcatcgaag ttatgtctgc taacagatat aactggagca tggttcatca      4680
     agcagtacgg acgattatga ttcgacaaca acatcggaga cacgtcatcg aacgaggcga      4740
     acgacgtgct ttgctcgcca acatccagtt ggccttgcag agcagcgaca gtgacgacga      4800
     gtaacgacaa ggattcatcg tagttcatcg tagcttcatc gccgagggct agacagtggc      4860
     taatcaccac tgttggaagc cattcgttgc ctgggatgat ggacatccac cgcccgagtg      4920
     acgtcgatac cctaacgggt gatccactcg gggccggttg aaggcacgga ggggttttag      4980
     tgagtaagaa tctcacacta ccggggttga tcacccaggt gtcttatgca agatttcccc      5040
     ttcgataaca aaaaaaaaaa aaaaaaaaaa aaaaa                                 5075
//
ID   R6Ag3       repbase;    DNA;    INV; 5289 BP.
XX
AC   AB090819;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon R6Ag3 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse-transcriptase; gag-like; R6Ag3.
XX
NM   R6Ag3.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090819; Positions       1    5289.
XX
FH   Key           Location/Qualifiers
FT   CDS           501..1700
FT                 /product="R6Ag3_1p"
FT                 /translation="MEARKQKPKKNVEDEEHERLIEEFISKLKKSYKKASK
FT                 AEENEAPRKVSHKAQLERFKNYANNLEIEDLRDGMIAQMIEFMESMIKEMS
FT                 ELKKQLKQKSTQEIEVQTAQPSELAEDAPFVPQTRKGRVPKEARKRDNNAR
FT                 QRSAQRETPKSSGGQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLKGL
FT                 THDDALKDVGDQVAKVRRTQNGDMLLVLKRGKEAVRVEAGIKNALKDKANV
FT                 RTLAPSVMIEITHLDEITLAEEIAEALKQQLEIDVDHKEIKVREARTKGTQ
FT                 KATFRVPLSAKERVLNPGKLKVGWCVCSLREATVQVKCFKCWKLGHKGFEC
FT                 TGQDRSKLCIKCGQEGHKIRECPNAMTCLDCREDMVEPHITGSLRCPNRIA
FT                 RRQQHG"
FT   CDS           1696..4761
FT                 /product="R6Ag3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVKLIQHNQNHCGAAFNLMWQTAREREVDLFIVADPV
FT                 KNQRHNNNIVYSEDQLAAIVTCGNLPIQKIVNKASRGMLAVEVGGILIVSA
FT                 YAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLGARGES
FT                 QRLRGDTLLAAFAGLEMVLMNNGQDTFVTPERKSAIDLTFVSQSLMETTGW
FT                 EVLPDYMNSDHIGILITIGKEQTPSPRDNAKKGWKTTLYHKELFAAALDRI
FT                 LHEMRVDTPDDLVKALDKACDATMSRLKKTCRWRGVYWWTSVIADLRRKSK
FT                 AASRVAQRAYDTPEFPDKRREYKLARNALKREIKRTKKATWYRLVNMSDII
FT                 LFGEVYVILKRMVGGNRVPKELDPEKLNTIIDELFPSHPVTDWPTHQPTTS
FT                 QENPESVTDEEIRNIGRSLKSRKVPGPDGIPNAALATAMIEEPTIFKKVYQ
FT                 RCLDTGVFPDNWKKQRLVLSIPKPGKRPGESGSSRPICLIDGVAKGLERVI
FT                 LHRLNNHIERVQGLSENQYGFRKGRATTDAIEKVLSIASASRARNRGANRF
FT                 CAVVTLDVKNAFNSASWTAIARSLQRINIPKYLYDIIGNYFRNRVLLYETN
FT                 EGNRERVVTAGVPQGSVLGPTLWNLMYNEVLGLTLYDGASLIGFADDIVLV
FT                 AVGSRIDDLENTIETSINIIRQWMESVELQLNISKTEYILVSSHRSRQESQ
FT                 IIVEGHTIRSSRHLKYLGIMIDDRLEYTQHIKYVAERAVTNTNALVRMMPN
FT                 RSGPRSSRRRIIANTIIAGIRYASSIWAESLKFECRKQWLRRCHRPLVNRV
FT                 ISAFRSTSHDAACVIAGMMPLHILIDEDYRVRQRSITTGVSSKLARIAERP
FT                 YSVEAWQREWSTTTSGSWTRRLIPNIQPWITRRHGNIEFHMSQFLSGHGFF
FT                 RSHLHRMGYVPSPVCPACGDENQTAEHTIFICGMYLLTRLRLEQDLQADFD
FT                 VENAINIMCSDEVTWNRVAEYVHEVMENQYNLQCSYRGNSDRELQNQEAAS
FT                 QETSPERAGISMNEDN"
XX
SQ   Sequence 5289 BP; 1630 A; 1218 C; 1378 G; 1063 T; 0 other;
     gcccggcaaa gtccgaccat cacctcctcg cggtgccggg cggggtagga gttcgtcctt        60
     ggacaggctc tgagctaacg atggcggcac gctttggtag tggatgcaga ccatgctatg       120
     gatcaggcta atgtattgga cgtaaaccat agatgaatgt tatcgggctg gcgaaaaact       180
     caaactgatc ccttagtaag gacgggtgaa actttcttga aacggcgtga gggtcaatga       240
     gtgattcgtt cccgtcctat taaaacctgg cgagtcttcg gtagcgctct aagtttgttg       300
     tcggcctagc aaaccgacaa ctataggtgc aggtgagctt cggccctgct taaccctgcc       360
     tggctctgag ctcacacctc ataagggtag tgagccaacc ctcgcgtgga gctccctgaa       420
     ccaaagccaa ccacggggca tcaacaaggg gactatagtg gcgaacaagg atagcggatt       480
     gaagtttgga cccaacagca atggaagcaa gaaaacaaaa acccaagaaa aatgttgaag       540
     atgaggagca cgagcggctc attgaagagt ttatctcgaa gctcaaaaag agttataaga       600
     aagcctcaaa ggctgaggag aacgaagcac cgagaaaagt ctcgcacaaa gcacaactcg       660
     agcgcttcaa gaattacgcg aacaacctgg agattgagga ccttcgtgac ggcatgatcg       720
     ctcagatgat tgagttcatg gagtccatga ttaaagaaat gagcgagttg aaaaagcagc       780
     tcaaacagaa gagcactcaa gaaattgaag tgcaaacggc tcagccaagt gaactggcag       840
     aagatgcccc ctttgtgccg caaactagaa aaggccgagt cccaaaagag gcccgcaagc       900
     gagacaacaa tgcgcgtcaa agatccgcgc agagagaaac tccgaagagt agtgggggtc       960
     aaagcaaaca gcccaagaaa aagaaaaaga agcgatcact tccaaaaccc gaagcagtgg      1020
     tcattgagaa gtgtgaaaac atagacctgg cgaaagtact aaaaggacta acccatgacg      1080
     atgccctcaa ggatgttggc gaccaggttg ccaaggtacg aagaactcaa aacggcgaca      1140
     tgctgctagt tctgaagcga ggcaaggaag cggtgcgggt tgaagcaggc atcaaaaatg      1200
     ccttgaagga caaggcgaac gtccgaacgc ttgctccctc ggtgatgatt gaaatcactc      1260
     atcttgatga aatcaccctt gctgaggaga tcgctgaagc cctcaagcaa cagctggaga      1320
     tagacgtcga tcataaggaa atcaaggtcc gagaagcaag aactaagggt acacaaaagg      1380
     ctacgtttag agtgcccctg tcagcgaaag agcgtgtcct caatccaggc aagttgaaag      1440
     ttggctggtg tgtatgcagc ctgagagagg ctacagtcca ggttaaatgc ttcaaatgct      1500
     ggaaactggg tcacaagggc ttcgaatgta ctggccagga tcgaagcaag ctctgcatta      1560
     aatgtggaca agagggacac aagatcagag agtgtccaaa cgctatgacg tgcctcgact      1620
     gccgtgagga tatggttgag ccccacatca ctggcagcct cagatgtccc aaccggatag      1680
     ctagacgaca acaacatggt taaattaata cagcataacc aaaaccattg cggagcggcc      1740
     tttaatctta tgtggcaaac cgctcgtgaa cgagaagtag atttgtttat tgttgctgat      1800
     ccggtaaaaa atcaacgaca caacaacaac atagtgtata gtgaggacca gttggcagca      1860
     atagtgacat gtggaaacct acccattcag aagatcgtca acaaggcatc gagaggaatg      1920
     ttagccgtag aggtgggagg catcctcatc gttagtgctt atgccccccc aagctggact      1980
     gtgcaggaat tcgaggaact gctcgataat attgttttga ccgtcagcgg atcgtccaag      2040
     tttgttgtgg caggggattt caatgcatgg tcttcaagct gggcaaacac ccttggagca      2100
     agaggagagt cacagcgctt gagaggcgat acactattag cagccttcgc cggattagag      2160
     atggtgctaa tgaacaacgg tcaagacaca ttcgttacac cagagagaaa gtcagcaatt      2220
     gacctaacgt tcgtgagcca atctctaatg gagacgacag gatgggaagt actgccggac      2280
     tatatgaatt cagaccacat tgggatactt atcacgattg gcaaagaaca aacacctagt      2340
     ccccgagaca atgcgaagaa gggatggaaa accacccttt atcacaagga actttttgct      2400
     gcggcactag atagaatcct gcatgagatg agagttgaca cgcccgatga cctggttaaa      2460
     gccctagata aagcatgtga tgctaccatg tccaggctga agaaaacgtg caggtggagg      2520
     ggcgtctact ggtggacgtc cgtgatagca gaccttcgga ggaaaagtaa agccgcaagc      2580
     agagttgccc aaagggcgta tgacactcct gaattcccag acaaaaggag ggaatataag      2640
     cttgccagga atgcgcttaa gagagaaatc aaaaggacaa aaaaagcgac ctggtacaga      2700
     cttgtaaaca tgtctgacat cattctattc ggcgaggtct atgtaatttt gaagcgaatg      2760
     gttggaggaa acagagtgcc caaagagttg gaccccgaga aactcaacac cattattgac      2820
     gaactatttc cgagccatcc tgtcacagac tggccgacac atcaaccaac gacaagtcaa      2880
     gaaaacccgg aaagtgtgac agacgaggaa atccgaaaca tcggaaggtc gcttaaatcc      2940
     aggaaagtac caggtccaga tggaataccg aacgctgctt tggcaacagc gatgattgag      3000
     gagccgacaa tcttcaagaa agtttaccaa agatgcctcg atactggtgt atttccagac      3060
     aactggaaga aacagaggct cgtgctctcg attcccaaac cagggaaacg accgggagaa      3120
     agcggctcat cacgtccgat atgtttgatt gatggagtag ctaaaggttt agaacgtgta      3180
     atactccacc gactgaataa ccacatcgag agagtacaag ggttatccga aaaccaatat      3240
     ggtttcagga aaggaagagc aacgactgat gccatcgaaa aggtcttaag catagcaagt      3300
     gcatccagag ctcgaaatcg aggtgctaat cgattctgtg cagtagtgac acttgacgtg      3360
     aaaaatgcat ttaatagcgc gagctggacg gcgatagcga ggtctctaca gagaatcaac      3420
     atacccaaat acctctatga catcataggg aattacttcc ggaaccgcgt gctgctctat      3480
     gaaaccaacg aaggaaatcg agaacgagtc gtaacagctg gagtgcccca agggtcagtg      3540
     ctgggaccca ccttatggaa tttaatgtac aacgaggtgc tcggcttaac gctgtatgat      3600
     ggagcatcac tcatcggatt cgctgatgat atagttctag tagctgtcgg aagccgaata      3660
     gacgatctgg agaacacgat cgaaacatcc atcaacatca ttcggcaatg gatggagtca      3720
     gtggagcttc aactaaatat atcgaagacg gagtacatcc tagtaagctc acacagaagt      3780
     agacaagaat cacagatcat cgtcgaagga cacacaatta gatcatcgcg ccacttgaag      3840
     tatctgggca tcatgattga tgatcgccta gaatacactc agcacatcaa gtatgtcgct      3900
     gagagagcgg tgaccaacac caacgcccta gtgagaatga tgcccaaccg atcaggacca      3960
     agaagcagcc gacgtcgaat tatagcaaac accatcattg caggcatcag atatgcctcc      4020
     tcaatatggg ctgagtcact gaaatttgag tgcaggaagc aatggctccg gaggtgccat      4080
     agaccattag tgaacagagt gataagcgca tttaggagca cctctcacga tgcagcctgt      4140
     gtcatagcag gcatgatgcc gctccacata ctaatcgatg aagactaccg agttcgacaa      4200
     cgaagcatca caacgggagt aagcagcaaa ctggcgagga tagctgaacg accatactct      4260
     gtagaagctt ggcaaaggga atggtcgacc accacttcag gctcctggac aagacgattg      4320
     atacccaaca tccaaccatg gatcaccagg agacacggaa acatcgagtt ccatatgagc      4380
     cagttcctat caggccatgg gttcttcaga tctcatcttc accgaatggg gtatgtacca      4440
     tcacccgtat gtccggcctg cggcgacgag aatcagactg cagagcacac catcttcatc      4500
     tgcggcatgt atcttctgac gaggttacga ctggagcaag atcttcaagc cgatttcgac      4560
     gtcgaaaacg caatcaacat catgtgcagc gacgaagtaa cgtggaatcg agtcgcagag      4620
     tacgtccacg aagtgatgga aaatcagtac aatctccaat gcagctacag aggcaacagc      4680
     gacagagaac tccaaaacca agaagcagca agccaagaga cttccccgga acgtgcggga      4740
     atcagcatga atgaggataa ctgacatggc cgatacatcg acgaagatcc attcccctcg      4800
     gaacgtgcgg gaatcagctg agatgccaaa gaccatacgc acacatgtct ctattctttg      4860
     gtcccccgac ttacgagtag agggaccttg atggtgagct tgtctgcggt tgtcagcccc      4920
     ggtgtggcca gctggtcaaa caccggactt tgacattata cttaggtgga tggcacactc      4980
     actgagatac catgtgcggc gatgaggtgc ctgacaccta ggagagatgg ccctccgggt      5040
     ctcgggacct gggcgcgggg tgtaatgttc tatacgcctg acagacacca ctgtcatagc      5100
     attgcggcgc cgtggtcgat gttgaccaaa ggaatgctgg ttgaagtaat gctctagcgg      5160
     gcgatccggc cagtatttct tgaggcacaa gagagtttaa gtggttaaaa tccatctgca      5220
     tacgtaggta ctggtgctct gtctatcgta tgtcctataa aaggttctct cttgtctaaa      5280
     cgggaaaaa                                                              5289
//
ID   R7Ag1       repbase;    DNA;    INV; 6470 BP.
XX
AC   AB090820;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon R7Ag1 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like; R7Ag1.
XX
NM   R7Ag1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090820; Positions       1    6470.
XX
FH   Key           Location/Qualifiers
FT   CDS           959..2539
FT                 /product="R7Ag1_1p"
FT                 /translation="MDKQLRGRTISVDERPAVVIRKLGSEKKLGTIVEEPS
FT                 SAGVPARTMATGGVKSAGTATKLATSTPVSTGEVRRMLADAKADNETTVGI
FT                 VKRLEEQIQLLRLQMEASNEQLKEAQREAREAREDARVREAEHREELRKEK
FT                 ELFNALLAQTLGGTSGARLESQQELQREQELLRRMESQQRQEQRQQLEDQQ
FT                 RQRWRQQQQKQQRQQRLPAQQWPTVQQSVRAQRQGVTESASSAVPDEAGTW
FT                 VEVVRGNQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIH
FT                 QQEKRRPRRKRPDEIVVVPAPGVSFKEMYVKIRTNPRIADFQRQIGVGRRT
FT                 PRDHLLLPLSRDVDSAALKDIIQEVIGERGSVTVRTEMAEVVLTGIDNMID
FT                 EEAIKKALMTTLGKQSLVATVNLWERRDMTKRARVRLPRAEAELVKDRRLE
FT                 LGYTYCSVHEAPKVSGQLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQTH
FT                 KASGCTNEVKCMLCGGAHRIGAAACGGQPSN"
FT   CDS           2544..6209
FT                 /product="R7Ag1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEVLQINVNRSRSAQDLALNTMRVERADVCLMVELHS
FT                 VPRNNGNWVADRDGKVAIIASSETYPVQQVVSVTQSGIAAARINDVLFICC
FT                 YVSPSAGVSEFEEVMQRIDVLARGHPRVVFAGDLNAWHTAWGSCRTNAKGE
FT                 AVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVAFASSSIAGVNTIPEH
FT                 RWRIISIYSYSNHVYIRFAVGELLQRPAADSRRQEGPSTRESGTRWRTRHF
FT                 DAELFGVALDVASFTERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAY
FT                 WWTPAIEVLCENCRLAKERLEAAIDEEEQIAAASDLLQVRTALDSSITTSK
FT                 KEHFDEILRGLAEDETGQWYRNVLSRLSGSWTARERDSSVLEVIVSTLFPQ
FT                 HPPVDWPASPGQVLERGEEEPVRDVNEQELLDIASSLNPRKAPGLDGVPNA
FT                 ALTAAIRKHTDIFKKLFQECLDNERFPDEWKKQKLALIPKPGKPPGLASSF
FT                 RPILLLNNPGKVYERLLLSRINDVIEDPESPRLAENQYGFRRGRSTVQAIQ
FT                 LVVDAGSHAMSFGRTNNRDKRCLLVVALDVRNAFNTASWQCIATALEDKGV
FT                 PRQLRNILRDYFANRELVYDTADGPVTRRVTAGVPQGSILGPTLWNIMYDG
FT                 VLRVELPEGASVIGYADDIVVMARGCTPQEAALVAEQAVDAIAAWMEDHHL
FT                 QLAPEKTEGVMISSLRRGQLKVPFRVGDTIIHSKQSIRYLGVQIHDHLSWK
FT                 PHVELSTAKALRVVGVVTAVMRNHSGPQVAKRRLLAAVAESIIRYAAPVWS
FT                 EATDLQWCQRKLAQVQRPLARGVTSSFVSVAYETGVALAGLVPFRLLVRED
FT                 ARCHRRLLAAPGASRKDIRLEERQGTFQEWQRAWDAAAAAPTASRYAVWAH
FT                 RMIPDLHLWMSRRHGEVDFHLSQVLTGHGYFREYLHVCGFAPSAECPRCPG
FT                 SVESVAHVLFQCEVFHEIRVELLGYGTSDPVNENNLGMKLLESPERWNSIQ
FT                 EAARKITKVLQQLWREDELQLNLQAHLAALPTRAAAVDAGPLDGEQVSVDG
FT                 VAELFRSNRGRARRTRRGRRRAEERVEVRLASAMAAAEREREDSILMAAVR
FT                 AEEAGEAPPPIPMRRRGLPPSPRTVRARHERRLYLQRLYRQRAREGTLPTV
FT                 PHGRNRRSRSAPSEADTIRRRMRRREMERLRRTARRVPSNQGVREVLSADA
FT                 LAAITEATTSGR"
XX
SQ   Sequence 6470 BP; 1443 A; 1666 C; 2157 G; 1204 T; 0 other;
     cagtcgcaat cgagagctcg acccgaacgg acgtgtttgc gcagtgctcc gtgtggtgag        60
     agggtgttcg tgagagcgag agagtgggag cgattgatat tcgtgtatcg aataatagtg       120
     agcgtgtgta tgcgaagcgg aagcgagggt gaacttctgg aactatctgg aactttctcg       180
     gctgttgccg tgcgtggctt ccttttgccc gtgcgtttgt gtatgcgttt gtgagtgtgt       240
     ccgcaagcga gtggaatatt ctcggctgtt gacgcgcgtg gcgcttcgtt gtccgggctt       300
     gtgtttcgtg taagcgagtg tgtgcgcaag aacgaggaga gttttctgga actatctgga       360
     actttctcgg ctgttgccgt acgtggcttc cttttgcccg cgcgggtgtg catgcgtgtg       420
     tgagtgtgtg cgcaagcgag tggaacattc tcggccgttg acgcgcgagg tgctccgttg       480
     cccgtgcgtg tgcttcgtga aagcgtgagt gtgtgcgcga gcgagagtag aatattctgg       540
     aactatctag aactttctcg acagttgccg cgcgtggctt ccttttgccc gcgcggatgt       600
     gcatgcgtgt gtgagtgtgt gcgcaagcaa gtggaacatt ctcggccgtt gacgcgcgcg       660
     gtgctccgtt gcccgcgcgt gtgcttcgtg aaagcgtgag tgtgtgcgcg agcgagagta       720
     gaatattctg gaactatcta gaactttctt gacagttgcc gcgcgtggct tccttttgcc       780
     cgcgcgtgtg tgtatgtgtg tgtgagtgtg tgcgcaagcg agtggaacat tctcggctgt       840
     tgccgcgtgt ggcgctccgt tgctcgcgcg tagcgttccg tgtcactgtg tgtgcgcttc       900
     tcatagcatc acagcgccgg ggacattcgt ggtggcgggg tggtagcaac ccgccaccat       960
     ggataagcaa ctgagaggaa ggaccatatc ggtcgatgag cgtcctgcgg tcgttataag      1020
     gaagctgggg agcgagaaaa aactcgggac catcgtcgag gaaccatcat cggcaggagt      1080
     gccagcgagg accatggcga cgggaggagt gaaatcggcg ggaacggcga cgaaactggc      1140
     gacttcaaca ccggtttcca ccggagaagt gcgtcggatg ctggcggatg caaaagctga      1200
     caatgagacg acggtcggca ttgtcaagcg gttggaggag caaatccagt tgctgcgctt      1260
     gcaaatggag gcctccaacg agcagctgaa ggaagcgcaa agggaggcaa gagaggcgcg      1320
     cgaagacgct cgggtacgcg aagcggaaca ccgcgaagag cttcgcaagg agaaggagct      1380
     gttcaacgct cttctagcgc aaacccttgg tggaaccagc ggagctcggc tagagagcca      1440
     gcaggaactg cagcgagagc aggagctgct tcggaggatg gaaagccagc aacgacagga      1500
     acagcggcaa cagctggaag atcaacagcg ccaaaggtgg cgtcagcagc agcagaaaca      1560
     acaacggcag cagcggctac ctgcgcagca atggccgacg gtgcagcaga gcgtgcgtgc      1620
     tcagcgtcag ggcgtgacgg agtcggcatc ctcggcggta cctgacgagg caggaacgtg      1680
     ggtggaggtt gttcgcggca atcagcgcgg gaataagcag aacggagtga atctgcccca      1740
     gcagtcagcc cagcggcagc cagcacaccg gcagcatcag cagtggccgc accagcaaaa      1800
     tgggcagcag cagcagcagc ggatgggcat tcatcagcag gagaagcggc gtccgcgacg      1860
     aaaacgcccg gatgaaattg tcgttgtgcc cgccccagga gtgtccttca aggaaatgta      1920
     tgtgaagata cggaccaacc cgcggattgc cgatttccag cggcaaattg gggttggcag      1980
     aagaacgccg agggaccacc tcctgctgcc tttgtcccgc gacgtcgata gcgcggcgct      2040
     gaaggacatc atccaggagg tcatcgggga acgtggatcg gtaaccgtca gaacagagat      2100
     ggctgaggtc gtcctgactg gaatcgacaa catgatcgac gaggaggcga tcaaaaaggc      2160
     gctcatgacc actcttggaa agcagtcatt ggtggccacc gtgaaccttt gggagcgccg      2220
     agacatgacg aagcgggctc gcgtgcgcct cccacgagca gaagcggaac ttgtcaaaga      2280
     tcgccgactg gagctgggct acacgtattg ttcggtacat gaagccccaa aagtatcggg      2340
     tcagctgact cgctgcttcc ggtgtctgga gcggggacac atcgccgcga cgtgcacggg      2400
     tgaggatcgg tccaagcgtt gtctacggtg tggtgaccaa actcacaagg cgtcgggttg      2460
     caccaacgag gtcaagtgca tgctgtgtgg cggcgcccac cgtattggtg ccgcagcctg      2520
     cggtggacaa ccctcgaact gaaatggaag tgctacagat caacgtcaat cgcagtagga      2580
     gcgcgcaaga cctggcgctc aacacgatgc gggtggagcg ggcggatgtc tgtctgatgg      2640
     tggaactgca cagtgtcccc aggaacaatg ggaactgggt ggccgacagg gacgggaagg      2700
     tggccatcat agccagcagc gaaacgtacc cggttcagca agtggtctcc gtgacgcagt      2760
     ctgggatcgc ggctgcccgg atcaatgacg ttctcttcat atgttgctac gtgtcgccct      2820
     cagcgggcgt ctctgagttc gaggaggtaa tgcagcgcat cgatgtgttg gcgagaggtc      2880
     acccgcgcgt cgtctttgcg ggggatctca atgcgtggca caccgcttgg ggaagttgcc      2940
     gcaccaatgc aaagggagag gctgtggtcc agctcgtcga cagcttgggg ctggaggtgt      3000
     taaacaccgg caccgcccca accttcctgg gcaacggagt ggctcgcccg agcgtggtgg      3060
     acgttgcctt cgccagcagc agcatcgccg gagtcaacac cattccggag catcggtgga      3120
     ggattattag catatactcg tacagcaacc acgtgtacat tcggtttgct gtaggggagc      3180
     tgctccagcg gccagcggca gatagtcgtc gacaggaggg tccttccacg cgagaaagcg      3240
     gcacgagatg gcgtacccgt catttcgacg ccgagctttt cggtgtagcg ctcgacgtag      3300
     cttcgttcac agagcgggtt acaagtgccg aaagcttgga gagagtcatg acggaagctt      3360
     gtgacgcagc catggcgcga gtgttccctt cacaaggtca ctcgggacga cctgcttatt      3420
     ggtggacgcc agcaatcgag gtcctgtgtg agaactgccg cctcgctaag gaacgccttg      3480
     aagctgccat cgacgaggaa gagcagatcg ccgcagccag cgaccttctc caggtgcgga      3540
     ccgccctgga ctcatccatc accaccagca agaaggagca tttcgatgaa atactgcggg      3600
     gcctcgcgga agacgagacg ggacaatggt accgcaacgt acttagccgc cttagtggaa      3660
     gctggacggc gagggagcgc gattcatcgg tgctagaggt catcgtttcc actctgttcc      3720
     cccagcatcc tccggttgac tggccagcgt caccaggcca agtcctggag aggggagagg      3780
     aggaaccagt tcgggacgtt aatgaacagg agctgctgga catcgcgagc tcgctgaacc      3840
     cgaggaaggc tccaggactg gatggtgtgc caaacgccgc tttgacggcc gccatccgga      3900
     agcatacgga catcttcaag aagttgttcc aggaatgctt ggacaacgag cggttcccgg      3960
     atgagtggaa gaagcagaaa ctggccctga tccccaagcc gggcaagcca ccggggctcg      4020
     cttcatcctt ccgcccgatt ctgctgctga acaacccggg caaagtgtac gagcggttgc      4080
     tgttgtcgcg aataaacgat gtcatcgagg atcctgaatc accgaggttg gcagaaaacc      4140
     agtacgggtt caggaggggc cgttcgacag tgcaggcgat tcagctggtg gtggatgcag      4200
     gcagtcacgc gatgtcattt ggccgtacaa acaacaggga taaacgctgc cttctagttg      4260
     tggcgctgga tgtgcgtaat gcgtttaaca ctgccagctg gcagtgcatc gctacggcgc      4320
     tggaggacaa aggcgtgccg aggcagctcc gcaacatcct tagagactac tttgccaaca      4380
     gggagctcgt ctatgacacc gcagacgggc ccgttacacg ccgagtgact gcaggtgttc      4440
     cacaggggtc cattctgggc ccgaccctgt ggaacatcat gtacgacggc gtgttgcggg      4500
     tcgagctccc tgaaggggct agcgtcatcg gctatgcgga tgacatagtg gtcatggcac      4560
     ggggttgcac accacaggag gcggcattgg tggctgaaca ggcggtggac gcgattgcgg      4620
     cttggatgga ggaccatcac ctgcagctcg ctccggagaa gacggaagga gtaatgatct      4680
     ccagtctgcg aagaggtcaa ctgaaggtgc cgttccgcgt aggggacacc atcatacaca      4740
     gcaaacagtc gatccggtat ctgggggtcc agatccatga ccacctgtcg tggaagccgc      4800
     acgtggagct gtcgacggct aaagccctcc gcgtggtagg tgtggtcacc gcagtaatga      4860
     ggaaccacag tgggccccag gtggccaagc gtcggctgtt ggcggcagtg gcggagtcga      4920
     tcatccggta tgctgccccc gtgtggtccg aggcgacgga tctgcagtgg tgccagagga      4980
     agctggccca ggtgcagagg cccctggctc gcggtgtcac cagctcgttc gtgtcggtgg      5040
     catatgagac cggagttgca ctggcaggcc ttgtgccgtt caggctgctg gtacgggagg      5100
     acgcaaggtg ccatcggagg ctcctagctg ccccgggcgc cagccgcaag gacatccggc      5160
     tggaagagag gcaggggact ttccaggagt ggcagcgagc gtgggatgcg gcggccgcag      5220
     ctccaacggc cagtcggtac gcggtttggg cccaccgaat gatcccggac ctgcacttgt      5280
     ggatgagtag gcgacatgga gaggttgatt tccacctctc acaggtgtta accggacatg      5340
     gatatttccg ggaatacctc catgtctgcg gttttgcccc atcggcggaa tgtccacggt      5400
     gcccggggtc ggttgaatca gtggcgcatg tgctgttcca gtgcgaggtc ttccacgaga      5460
     tccgggtgga gctgttgggc tacggcacca gcgacccagt gaacgagaac aatctcggca      5520
     tgaagctgct ggagagcccc gagcggtgga acagcatcca ggaagctgca cgcaaaatca      5580
     cgaaggtgtt gcaacagctt tggcgtgagg acgagctgca gctcaatctc caggcacacc      5640
     ttgcagcact accgacgaga gcagcagcgg tagacgccgg tccgctggat ggtgagcagg      5700
     tgtcggttga tggggtggct gaactctttc gttccaaccg aggtcgagcc agacggacca      5760
     gaagaggtcg tcggagggcg gaagaacggg tggaagtgcg ccttgcatcc gcaatggcag      5820
     cagccgaacg agaacgtgag gactctatcc tgatggcggc ggtgcgggcg gaggaagcag      5880
     gagaagcacc accacccatc cccatgagaa gacgcggact gcctccatct ccgagaacgg      5940
     taagagcgcg gcacgaacgg agactgtatc tgcaacgtct ctaccgtcaa cgcgccaggg      6000
     aagggactct accaacagtc ccacacggta gaaaccggag gagcaggtcg gccccttcgg      6060
     aagccgatac catccgacgg cggatgagaa ggcgtgagat ggagcggcta cgccgaacag      6120
     cgcgaagggt gccgtccaat cagggagtgc gtgaggtgct atccgccgac gccctggcag      6180
     ccatcacgga agcaacaacc tccggccgtt agaaggagga ttatggggta ggaagtgcat      6240
     gggacagcaa aagggtacgg cgcaaaagaa aaataaaaaa tgcgttgggg ttttaattcc      6300
     gtaaggaaaa aagaataagg aacgaaataa ataagaacca ataaaggcga tgtcacaagt      6360
     gacacatact cctggttcca agccccgcta gggaacgggt ccaggagcag gagtggggat      6420
     ttaacgttaa gttaatcttg caaataaatc cttaagtatt aaaaaaaaaa                 6470
//
ID   R7Ag2       repbase;    DNA;    INV; 6590 BP.
XX
AC   AB090821;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon R7Ag2 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R7Ag2.
XX
NM   R7Ag2.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6590
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
DR   EMBL/GenBank/DDBJ; AB090821; Positions       1    6590.
XX
FH   Key           Location/Qualifiers
FT   CDS           1762..2610
FT                 /product="R7Ag2_1p"
FT                 /translation="MLQQQQQQQRQPQRQAVVGTQQQQQRRQQQQHQQRSN
FT                 ATQAQRREQLRNEQRRPARLRQDQIIFEPAEGTSYKVLYEKIRLNPRLQEE
FT                 NKGVHQGYRTTRDFLRLELKKDTDAASLLQRIQQEVGDLAAGRIVTEMAEV
FT                 LITGIDMLAKKEDVERGLQRALERTAVAATTSLWERRDGTQRARVRLPRRD
FT                 TDLLLDKRIVVGHSVCLVRSAPKQQQSAVRCFRCLERGHTTADCAGEDRSS
FT                 LCLHCGAADHRAASCTSDPKCIVCGGPHRIAAPMCKGPPSQC"
FT   CDS           2526..6110
FT                 /product="R7Ag2_2p"
FT                 /translation="MHFGPEVHCLRRPTSHRRPHVQRTAITMLNILQFNAN
FT                 HCENAQDLALHVITTESLDVLLLSEPYCVPRNNGNWVTDESKTVAIVVNGN
FT                 RLPIQRIRHRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVR
FT                 GCSRVLLAGDFNAMHLDWGSSRTCPKGLELLQLADNLGLVLLNKADCLPTF
FT                 KGNRADTNRFPPSRPDVTFASSVISRLDPRDDSARGWRVPDVATLSDHRYV
FT                 QYEVGESSPPTRDRAARRGQRPARVSKAGTRWKTSQFDSQLFGKALAMTGF
FT                 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLS
FT                 RKEQMTMRTIPPEEQLQTELLAARESLRKAIRLSKNEAFDRFLRSIREDVT
FT                 GIFFRKVFHWFQGARSAPERDPAELRRIVDALFPVHPPVEWPDLGVGNMAP
FT                 LRSIGLTELDQIAASMHPRKAPGLDGVPNAALTVALRQQPEPFRRVFQECL
FT                 DMSCFPQPWKKQRLVLLPKPGKSPGEPSSFRPICLLDNTGKALERLLLNRL
FT                 NEYIEDPESPQLSEQQFGFRRGRSTLQAIQQVVDAGRRALSLGRTNNRDRR
FT                 CLMVVALDVRNAFNTASWQSIAEALQAKGVPVQLCRILQDYFADRELEYDT
FT                 ADGPVTRRVSAGVTQGSILGPTLWNIMYDGVLAVELPEGASIVGFADDLAI
FT                 LAAGTIPEHAAAIAEEAVAAVNNWMVQHKLSLAPEKTELLMISSKRSGYRN
FT                 IPVNICGVEVRSKRSIRYLGVMLHDHLSWRPHVEMVADKALRVVRALRGIM
FT                 RNHSGPQVSKRKLLAAVAASIIRYGAPVWTEATDLQWCRRILDRVQRLLAQ
FT                 GITSAFHSTSCEVAVVLAGELPYHLLAKEDARCYNRQQSSPDSSREAIRQE
FT                 EKETSLQLWQQQWDDVAANNTSRYLRWAHRQVPDVRLWTGRKHGEVDFYLS
FT                 QVLSGHAFVHEFLHVFGFAPSPDCPRCAGSVESVAHVMFECPRFADVRAEF
FT                 LQGVGEHNLGSRLLESAEWWDRIQQAARRILSVLQEDWREEQQTLAAAEAA
FT                 QPDPASSLPEDMAEAERRLLRRREVRNRSAQRRRQQQRQQRLGDFELVPAV
FT                 LARAAANEAAEPTGEVEEEEVSPPVPPIPPRSRRLPPSPRTTEMRRRRRNY
FT                 MQLQYRRRRRDGELGDVPQGRQRRGRIPTSAAELER"
XX
SQ   Sequence 6590 BP; 1616 A; 1777 C; 2009 G; 1188 T; 0 other;
     agttgcaact gagagttcaa accgaacaga cgtgcctcca cgcagttccg tgagcaagtg        60
     aaaaaattgc aagtaaaatg caataaaacc gtatgaattg tgcatattcg tgtagatgaa       120
     tgcaaagtga aacactgtgt gtgaaatttg gatcaaaaac agtggataga aacgttagaa       180
     aagtgtttgt aatattctgt gacgtcacac cataagtttg tatggagaaa actttgtgcg       240
     tcaaataaac aggttactac atatatttcc ggaatcaaaa gtgatcaggc gatagatctc       300
     gccgggatct ttacagtgac ggttttcctg tggaaaaata ttaaatggaa agtggtaaaa       360
     agtgcatcag aaagttattt aattcggaat ttatcgcgtg ggtaaaatgg cgtctgcccg       420
     tgaaaatttt tattttcggg ttgggccagt gtgtcaaaag tgacaaggct tggtaaccgc       480
     ctgacaccgt tcggccccgc cattttcgcc gtcgttgaag tgtcaaactg aattagtgaa       540
     acattacaag aacaaattca aatggtccgt tgaaagtgca gtaaaagaag aaagttttcg       600
     tgaaagtttt caaaaaaatt caaaaaaaaa ggcgttgcga gtgaaattgt ggtgaagtgt       660
     gtgaaatatt tccgaccgtt aatttcaaaa ccaaccgttg gtgaactttt cggggccagt       720
     tttgaaatta acggccaagt gcgcggaaag tttcacggcc aagacggaaa gggccgttta       780
     tagtgtggtg tgtgagttga actatacacg gacatacgtt ccggccgaaa tatagtgagt       840
     ggttgaagtg ttaaagcggt aggcacacgt gctgaaacaa atttgaaacg acggttggaa       900
     gcagttcgac agcgttacat agcgagcgga tttgcagcgg tacgcccaag ttgcagcggt       960
     acggcggagg tgatatgggc aacgacatct gttggcaata acaacagccg agacagaaac      1020
     cagctccccg ttcggttggc taacgcggtg ccttctattg cccgcaagca gaaaaataaa      1080
     ctgctgccac ctgcggtaga cgagtaaaat ggttgcaaaa ctctaaaata aatggatcgc      1140
     aacttaaggc ctcggcagcc gtctgtcgat tgtagcttgg aagcgattcc aaagaagacc      1200
     acagtttctg cgaaagtcga cactggacgc acgtccatga cggcgaagat gaacgaggag      1260
     aaagaaatcc gcctgcacct catgctgcag gcggagaagg ccgaaaaggc ggaacttatg      1320
     aagacggtgg caagtcttca agccacaata gagggccttc agaagcagct ggcggaggaa      1380
     cagcaggcca ggctttccgc cgatgcggag ctaagaagga acgggatgca atgctggccg      1440
     agatccgaga cctggggcag taaatgcgcc gggagctatc ctggaaactc ggccaacagc      1500
     aacagttgca gctgcaatcg caacctggtc cgtcagggac agcggcggta aagctcccgg      1560
     accaccaggc gccaacggca gaaggcattc ggcaagcgga gcagctcagc ttcgctgagg      1620
     tcgtccgccg caaatttcgc ggcatggcta aggggaaact ccggcagccc cctcagcagc      1680
     atcagcagca gcagcaggaa cagcagcagc tgcaacaaca gcagcagcag cggtacccac      1740
     agcgacaggc cggtcgctgg catgctgcag caacaacagc agcagcagcg gcagccacag      1800
     cgacaggcgg tcgtcggcac gcagcagcag caacagcgtc ggcagcagca acaacaccag      1860
     cagcggtcaa atgccacgca ggcgcagcgc cgagaacagc tgcggaacga acaacgacgt      1920
     ccagcgcgcc ttcggcagga ccaaatcatc ttcgagccag ccgaaggtac atcctacaag      1980
     gtgctgtacg agaagatacg cttgaacccg cgcctacagg aggaaaacaa gggagtccac      2040
     cagggctacc gtacgactcg ggacttcctc cgactcgagt tgaagaagga tacagacgcc      2100
     gcttcgttgt tgcagcggat ccaacaggaa gttggcgact tggccgctgg ccggatcgta      2160
     acagagatgg ccgaagtctt gatcacgggt atcgacatgc tggccaagaa ggaggatgtg      2220
     gaacgcggtc tgcagcgggc gctggagcgc acagcagttg cagcaactac atctttgtgg      2280
     gagcgtcgcg acgggacgca gcgtgcccgt gtccgactgc cacggaggga cactgacctc      2340
     ctactggata agcgcatcgt ggtcgggcat tcggtgtgcc tggtgcgcag tgccccgaaa      2400
     cagcagcaaa gcgcggttcg ctgtttccgc tgcttggagc gcggccatac cacagcagac      2460
     tgcgctggcg aggatcgatc cagcttgtgc ctgcactgcg gagccgcgga tcatcgcgcg      2520
     gcgtcatgca cttcggaccc gaagtgcatt gtctgcggcg gcccacatcg catcgccgcc      2580
     cccatgtgca aaggaccgcc atcacaatgt tgaacatcct gcagttcaac gcaaatcact      2640
     gtgagaacgc ccaggacctg gcgttgcacg tgataaccac cgagagtctc gacgttctgc      2700
     tcttgtccga gccctattgc gtaccgcgca ataacggcaa ttgggtgacg gacgagagta      2760
     agacggttgc catcgtcgtc aacggcaacc ggctgccgat acagcgtatc aggcaccgtc      2820
     agaccctcgg tgtggttgct gccgacgtgg gaggaacaac aatcgtgagc tgctacgtgt      2880
     cgccgcagac gggagtcccg gagttccgga gcattatgga gaagattgac ttgatcgtcc      2940
     gcgggtgcag ccgggttctc ctggccggcg atttcaacgc catgcacctt gactggggaa      3000
     gcagcaggac ttgcccgaag ggcttggagc ttctccagtt ggcggacaac ctcgggctgg      3060
     tgctcctgaa caaggcggac tgcctaccta cgttcaaggg gaaccgagcg gacacaaatc      3120
     ggttcccgcc cagccgaccg gacgttacat tcgccagcag tgtgatcagc cgcctcgacc      3180
     cgcgcgatga cagcgcccga ggctggcgcg tgcctgacgt ggcaacgctg agtgatcacc      3240
     gatacgtcca gtacgaggtt ggcgagagtt caccaccaac gagggatcgg gcagcacggc      3300
     gtggacagcg cccggcccgt gtaagcaaag ccggtacgcg ctggaagacc agtcagtttg      3360
     actcccagct tttcgggaaa gcgctggcta tgactgggtt cgcccgtcaa gttaacagcg      3420
     tcgaaagctt ggtcgagtcg ctgaccagcg tctgcgacga gacgatgtcg cgggtcttcc      3480
     caacgcagga ccacacaggt cggccagctt actggtggac tccggcgatc caggcaatga      3540
     tagacaacct ctccagaaag gagcagatga cgatgaggac aatcccgccg gaagagcagc      3600
     tccaaacgga actcttagct gccagagaga gccttcggaa ggctattcgt ttgagtaaga      3660
     acgaggcgtt cgaccggttc ttgcggtcga tcagggagga cgtaactgga atttttttcc      3720
     ggaaagtctt ccactggttc cagggagccc gctcagcccc ggaacgtgat ccagcagaac      3780
     tgcggcgaat tgtcgacgcc ttgttcccgg ttcatccgcc ggtcgagtgg cctgatctcg      3840
     gagttggcaa catggcgccg cttcgatcga tcggcctgac cgagctggac caaatagcag      3900
     ccagcatgca cccgcggaag gctcctgggc ttgatggagt gccgaacgcc gctcttacag      3960
     tcgctctcag gcagcaaccg gagcccttcc ggcgggtgtt tcaggagtgc ctggacatgt      4020
     cctgctttcc acagccgtgg aaaaagcagc gactggtgct cctgccaaag ccaggcaaat      4080
     caccgggcga gccgtcgtcc ttccgcccga tttgcctgct ggacaacacg ggcaaggctt      4140
     tggagcggct gctattaaac cggctcaacg agtacatcga agatcctgag agtccgcaac      4200
     tgtctgagca gcagttcgga ttccggcgag ggcgatcgac tctgcaggcc atccagcagg      4260
     tcgtggacgc gggacggagg gcgttgtcct taggcagaac caacaaccgt gaccggcgct      4320
     gcctcatggt tgttgccttg gacgtccgca acgcgttcaa tacggccagc tggcagagca      4380
     tcgccgaggc gctccaggcg aagggtgtcc cagtgcagtt gtgccgcata ctgcaggact      4440
     acttcgccga cagggagctc gagtacgaca cggcggacgg gccggttacc cgccgagtat      4500
     cggcaggtgt tacacagggg tccatattgg gccccacact gtggaacatc atgtacgacg      4560
     gcgtgctagc cgtagagctc cctgagggcg cctccatcgt gggattcgcc gacgatcttg      4620
     cgattctggc agcgggaaca atcccagaac acgccgctgc aatagcggag gaagcagtag      4680
     cagcggtcaa caactggatg gtgcagcata aactttctct ggcgccggag aagacggagc      4740
     tgctgatgat ctccagtaag cgcagcggat atcgtaacat cccggttaac atctgcgggg      4800
     tggaagtgcg ctcgaagcga tcgatccgtt acttgggggt catgctacac gaccacctat      4860
     cgtggcgccc acacgtcgag atggtcgcgg acaaggccct ccgtgtggtg cgagcattgc      4920
     gcggtatcat gcgcaaccac agcggccccc aagtgagcaa gcggaagctg ctcgccgcag      4980
     tggccgcatc cattatccgc tacggcgcac ccgtctggac ggaagccacg gacttgcagt      5040
     ggtgcaggcg gatattggat cgcgtgcagc gcctcctggc ccagggcatc acgagcgcct      5100
     tccactccac gagctgcgag gtagcggtag ttttagccgg agaactgccc taccacctcc      5160
     tggcgaagga agacgcccgc tgctacaatc gacagcagtc cagcccggac agcagtcgag      5220
     aggcgattcg ccaggaggag aaggagacat cgctgcagct gtggcagcaa cagtgggacg      5280
     acgtggcggc aaacaacacc agccgctact tacgttgggc ccaccgacaa gtgccagacg      5340
     tgcgcctgtg gacgggacgg aagcacggag aggtagattt ctacctctcg caggtactta      5400
     gtggacacgc cttcgtccac gagttcctgc acgtgttcgg gttcgctccg tccccggatt      5460
     gtcccaggtg cgcagggtcg gtcgagtcgg tggcccacgt aatgttcgag tgtccacgtt      5520
     tcgcggatgt ccgggcggag ttcctgcaag gcgtcggcga acacaacctc ggcagccgcc      5580
     tgttggagag tgcggagtgg tgggaccgca tccagcaagc ggctcggcgg atcctctccg      5640
     ttctgcagga ggactggcgg gaggagcagc aaaccttggc agcagctgag gctgctcagc      5700
     cagatcctgc atccagcctg cccgaggaca tggcagaggc agaacggaga ctgctgcgac      5760
     gtcgcgaggt gcgcaaccgc agcgcccagc ggaggcggca acagcaacgg cagcagcgac      5820
     tcggcgactt tgagctggta ccagccgtgt tggcacgcgc agcggccaac gaagcagcgg      5880
     agccgacagg ggaggtcgag gaggaggagg tcagccctcc agtaccacca atccctccgc      5940
     gcagccggcg attgccaccc tccccacgaa caacggagat gcggcgacgt cggcgcaact      6000
     atatgcagct gcagtatcgg aggaggcgtc gggacggaga gctcggagat gtcccgcagg      6060
     gtcgccagcg acgtgggcga ataccaacat ccgcagcgga gctggagcga tgacggctca      6120
     acaggcgaca gagggagaga caacggcggc tggagcaacg gcaagcggag gtcgaggctc      6180
     agcctccccc gtggcgagct gccgaatgag ctgccgagct ctcagctggc cgaaagaaga      6240
     agcagcctca cagacgtcga gagagcggcc ataacatcgg caaatacttc cgcacgttga      6300
     ggaatattgg aatatgattt ggagacacct gctaggaaac ggaaaacgtt aaaggcttac      6360
     ggaacgacat ttttgttttg cgaaaaagga tatcttcctc tgatcatttg gggaagtaca      6420
     aaaactaagt gaactaaaat actatagttt aaataaagag aaaggcccaa atgagcgaaa      6480
     ttcccggcgg ggtggagtcc attagtggta accccccgct ggtaggagcg ggttttcttg      6540
     gaagcagtta gtaacaccaa taaagataac ccaatgaatt aaaaaaaaaa                 6590
//
ID   RaR2        repbase;    DNA;    INV; 4718 BP.
XX
AC   FJ461304;
XX
DT   04-NOV-2011 (Rel. 16.12, Created)
DT   04-NOV-2011 (Rel. 16.12, Last updated, Version 2)
XX
DE   28S rDNA-specific non-LTR retrotransposon R2 from Rhynchosciara
DE   americana.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; RaR2.
XX
OS   Rhynchosciara americana
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Sciaroidea; Sciaridae; Rhynchosciara.
XX
RN   [1]
RP   1-4718
RA   Rezende-Teixeira P., Siviero F., da Costa Rosa M.
RA   and Machado-Santelli G.M.;
RT   "The R2 mobile element of Rhynchosciara americana: molecular,
RT   cytological and dynamic aspects.";
RL   Chromosome Res 17(4), 455-467 (2009).
XX
DR   EMBL/GenBank/DDBJ; FJ461304; Positions       1    4718.
XX
CC   This family is specifically inserted into 28S ribosomal RNA
CC   genes.
XX
FH   Key           Location/Qualifiers
FT   CDS           1380..4406
FT                 /product="RaR2_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MSNYNETNTSGGDNPRMATQTTGSLSSGPINQHTCEL
FT                 CCRTFGTRAGLGQHVRKTHPIESNQSINVERKKRRWSPEEIRRMANMEAQA
FT                 TINNIKHLTQYLATYLPQRTLNAIKGRRRDAEYKELVTGIIANLRSNSSTQ
FT                 QTNQVCNESEMSQRSKILQSIRESVRDLRSRRNKYAKALQELGEAALCGKM
FT                 LNEEQLIHCIKSMFNTAKCPKGPRFRKTATHSGTNKQQRQQRYARVQKLYK
FT                 MNRKVAAKMVLEETDKIQIKLPDHDPMFKFWESEFKEGEGMPERMPKDLKE
FT                 SPDLKAIWDPVTEEEVRKAKVANNTAAGPDGIQPKSWNRISLKYKTLIYNL
FT                 LLYYEKVPHKLKVSRTVFIPKKKDGSSDPGEFRPLTICSVVLRGFNKILVQ
FT                 RLVSLYKYDERQTAYLPIDGVGTNIHVLAAILNDSNTKLSELHVALLDITK
FT                 AFNRLHHTSIIKSLVGKGFPYGFITFIRRMYTGLQTMMQFEGHCKMTQVNR
FT                 GVYQGDPLSGPIFLLAIEKGLQALDKEVGYDIGDVRVNAGAYADDTDLVAG
FT                 TRLGLQDNINRFSSTIKQVGLEVNPRKSMTLSLVPSGKEKKMKVETGKPFR
FT                 ANDVPLKELSINDFWRYLGISYTNEGPERLSLTIEQDLERLTKAPLKPQQR
FT                 IHMLNAYVIPKYQDKLVLSKTTAKGLKRTDRQIRQYVRRWLKLPHDVPIAY
FT                 LHAPVKSGGLNIPCLQYWIPLLRVNRVNKITESQRSVLAAVGKTALLTSTV
FT                 YKCNQSLATLGGNPTMLAYRTYWEKELYAKVDGKDLQNARDDKASTRWNGM
FT                 LHSDISGEDYLNYHKLRTNSVPTKVRTARGRPQKETSCRGGCKSTETLQHV
FT                 VQQCHRTHGGRTLRHDRIVGLLQHELRRDYNVLAKQELKTGIGLRKPDLVL
FT                 IKDDTAHIVDVQVARCSKLNESHVRKRSKYDKKEIEVEVKSRYRVSKVMYE
FT                 ACTISYKGIWDKQSVMSMRRLGVSEYCLFKIVTSTLRGTWLCWKRFNMITS
FT                 VRS"
XX
SQ   Sequence 4718 BP; 1610 A; 875 C; 1133 G; 1100 T; 0 other;
     cagaacgtgg agaaacggaa taactaccca gatccgttgg ttaaccggtg gcaaagttaa        60
     tcaaggttgc cataggctta ataaccctat ggaaatgttt ccacacacct ccacgtggtg       120
     cctgccggaa attgttctag ggtgaacaag ctaagttgtg agaaacgggc tccaccacaa       180
     tatggagcct gccagggcgc gagactcagg actctccatg tacaaagtgg ttagttgcaa       240
     aaagagtgcg cctagcatga ctgataattt ttcactgaaa taacgttgaa ctttatctgt       300
     gtcatgtgca caacactatg gtgtctgatc aagcaccatc agtggtggac ctgctaatgt       360
     attagtagaa cgtgtccagg cgataatgca cacacggcct ccgggcccat cgcttttttt       420
     gagattccct agaaacttca gtgtgtgcga caactgtata acccataagg gatggacaaa       480
     ggttatacta gggggtaaaa accctaatcg gctaatggca aatgggatgt agaaatgcca       540
     aagattactc gcaccgaata atggtggccg aaaagcgggt aatcgaatga aatggtaatg       600
     ctgtagcgga aacatgatca cattctgtga cagtaaacca ttagacctag ggggaactat       660
     gattaacaag ataccagctt acatggaagc aatgaaatgt aagtcacagt agtgataagt       720
     ggtgaagagt cttgtaatca ccgtaactag gccaggttct ggggatgcca tgaacttagg       780
     gggagtatgg ttagcagatc taccagctaa cactattact gataatatgt aagccgcagt       840
     agcgctaagt ggtgtacaga tttgcaacca ccgtaactaa gttctgtttc gatggactag       900
     ggggaatcat gattaacaag ataccaactt acatggaagt tatgaaatgt aagtcacagt       960
     agtgataagt ggtgaagagt cttgtaatca ccgtaactag gccagatgta gtcaaagcac      1020
     atgtttaggg ggaacaaggt taacattggt aaaagaccaa tgcaacctcc gtaactaaac      1080
     gtgaaggcac aaaactaaaa gtccagtgga tgacaggtga ggtcatcact ggacccaaat      1140
     gttttaagct catcataaca acacggtgaa aaatccagca tttatttgcc tgattgagta      1200
     gcttccacac tattccaaag ccgaacctat ctgggttttt cttgaaaggc cgtatagggc      1260
     atatgtcgag aaataagtcc aaggtgaggt agtgtggccc tgtacccagg ggtaaggtac      1320
     tatacggtcg agtggctcag taggcctaac tagccactga gtcactataa tgactagtta      1380
     tgagcaacta caatgaaaca aacacgagtg gtggggataa ccctcggatg gccactcaaa      1440
     ccactggatc gctatccagt ggaccaatta accagcacac atgtgaacta tgttgtagga      1500
     catttggtac acgtgccgga ttgggacaac atgtgagaaa aacccatcca attgagtcca      1560
     accaaagcat taatgtagaa cgaaagaaaa gaagatggtc acctgaagag ataagacgta      1620
     tggcgaatat ggaagcccaa gctaccataa acaacatcaa acacttaact caataccttg      1680
     caacttacct tcctcaaaga actttgaacg ctattaaagg aaggagaaga gatgctgagt      1740
     ataaagaact ggtgaccggc attatagcaa atcttcggag taattccagt acacaacaaa      1800
     ccaatcaggt ctgtaatgaa agtgaaatgt cacaacgcag taagatactg caaagtatac      1860
     gagaaagcgt acgtgacttg agaagtagac gtaataaata tgcgaaagca ttacaagagc      1920
     ttggggaagc agcattgtgc ggtaaaatgt tgaacgaaga acagctaata cattgtataa      1980
     agtcaatgtt caacaccgct aagtgtccga aaggaccaag atttcgcaaa actgcaaccc      2040
     acagtggaac aaataagcaa caacggcaac aacgatatgc tagggtgcag aagttgtaca      2100
     aaatgaaccg aaaggttgcc gcaaaaatgg tgttagaaga aacggataag atacagataa      2160
     agttaccgga ccatgatccg atgttcaagt tttgggaaag tgaatttaag gagggcgaag      2220
     gcatgccgga aaggatgccc aaggatctga aggaatcgcc cgacttaaaa gcgatatggg      2280
     atccggtaac tgaagaggaa gttagaaagg caaaagtggc gaataacacc gcggcaggtc      2340
     ctgatggaat tcagccgaaa tcatggaaca ggataagttt aaaatataag acgttaatat      2400
     acaacttact cctgtactat gaaaaagttc cacataagct taaggtgtca cgaactgtgt      2460
     ttattcctaa gaaaaaagat ggatccagtg atcctggtga attccgacct cttacaatat      2520
     gttcagtggt ccttagaggt ttcaataaga tccttgtgca gaggcttgta tccctatata      2580
     aatatgatga aaggcaaaca gcttatttgc ctatagatgg tgtgggcacg aacatacacg      2640
     tgcttgcggc gatactcaat gactcgaaca caaaactgag tgaactgcat gtagcgctat      2700
     tggacattac gaaagcattc aatcgcctac atcacacatc gataatcaaa tccttagtgg      2760
     gaaaggggtt cccttatgga tttattactt tcatcagaag aatgtatacg ggcttacaaa      2820
     cgatgatgca atttgagggc cactgcaaaa tgacacaagt gaacagagga gtctaccaag      2880
     gagacccttt aagcgggcca atctttttgt tggctattga aaaaggctta caagctcttg      2940
     ataaggaagt tggctatgac ataggggatg tgagagtcaa tgcaggtgct tacgcagatg      3000
     atacagactt ggttgcagga acgagacttg gcttgcaaga caacataaac aggttttcaa      3060
     gtactattaa acaggttgga cttgaggtaa atccaagaaa gtcaatgaca ttgtctctgg      3120
     taccttcggg gaaagagaag aaaatgaaag tagaaactgg caaacctttc agagcgaacg      3180
     atgttcctct gaaggaactg tcaattaatg atttttggag atacctgggc ataagctata      3240
     cgaatgaagg gcctgaaaga ctgagtctta caatagagca agatctagaa cgcctaacta      3300
     aagctccatt aaagccacaa caacggatac atatgcttaa cgcatatgta atacctaaat      3360
     atcaagacaa acttgtcttg agtaaaacca cggcaaaagg gctgaagcga acagataggc      3420
     agataaggca atatgtaaga cgatggctaa agttaccaca tgatgttcca attgcatatt      3480
     tgcatgcacc agttaaatct ggtggcctaa acattccatg cttgcaatac tggataccat      3540
     tacttagagt aaacagagtc aataagatta cagaaagtca acgcagtgta cttgcagcgg      3600
     ttggtaaaac agccctgcta acgtcaactg tttataaatg taatcagtct ctagcaacat      3660
     tgggtggaaa cccaacaatg cttgcatatc gaacgtattg ggaaaaagag ctatatgcaa      3720
     aggtcgatgg gaaagaccta caaaatgcgc gggatgataa ggcttcgacg aggtggaatg      3780
     gcatgttgca tagtgacatt agtggagaag actatttgaa ttatcataag cttcgaacaa      3840
     atagtgtacc cactaaagta agaacggcaa gaggacgtcc tcaaaaggaa acgtcttgca      3900
     gaggtggttg taaaagcacg gaaacgctgc aacatgtagt tcagcagtgt catagaacac      3960
     atgggggaag aactctaaga catgacagga ttgtgggtct tctccaacat gaactacgcc      4020
     gagactataa tgtcttagct aaacaagaac taaaaacggg catagggttg cgcaaaccgg      4080
     atttagttct tataaaagat gacactgcac acatcgttga cgtgcaagtc gcaaggtgta      4140
     gtaaactgaa tgaaagccat gtaaggaagc gatccaaata cgacaagaaa gaaatagagg      4200
     tagaagtaaa aagtagatat cgtgtaagta aggtgatgta tgaagcttgc acgatatcat      4260
     acaaaggtat ttgggataag cagagcgtga tgagcatgag aagacttgga gtaagtgaat      4320
     actgtctttt caagattgtc acatcaacac taagaggaac atggctttgt tggaaacggt      4380
     tcaatatgat cactagtgtt cgatcataga aatgtgtgcg ataaggtgtg aatagaaggg      4440
     ttcaccaaga gggagaccta gtttggacct cagaaatggg gtcataggag tgataggttg      4500
     taaagccgtt ggggaatccg gctacacatg gtatctcagg agccattcat gcgctgatct      4560
     cattaaggcg taataaactg tgaaacagat cctgataatg ccgtgctacc aaatgatgta      4620
     acgaggcgga aataaaatta atctggggcg ttctgcggaa tgactactaa atatagcgat      4680
     gctatatata caaacgactg atggtaacac cggcctta                              4718
//
ID   Rehavkus-1_CFl repbase;    DNA;    INV; 4018 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.04, Created)
DT   22-MAR-2011 (Rel. 19.04, Last updated, Version -1)
XX
DE   DNA transposon from the Florida carpenter ant genome: consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Rehavkus;
KW   Rehavkus-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-4018
RA   Jurka J.;
RT   "DNA transposons from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 831-831 (2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1199..2116
FT                 /product="Rehavkus-1_CFl_1p"
FT                 /translation="KVLRLLTILLHEIKLWNLTSHFHTKIGLACLLKMYYI
FT                 LIKNRILAIIVYYSVKFGRIKCMQLFIKLQRYRARWFSKILKFRTLAYILP
FT                 LKSCKECDCIFLGHIVNKPPPEADVIMECKISNFDESVRHERKRQLKGQRR
FT                 VEVSKILAENSELPCRWRRAEANKLMNLGDPEPPHLSNNRVLRKAKQERHD
FT                 INLGANDETDPIKNIHKMKYKLHAGTIHLIRSVFRSLLDSGTNSNIYAISK
FT                 LHFNRCYWILGKKIKITKWRIVKSYILVSNCMRNSNRKDANVSNVKRCTAY
FT                 ECDSLLAIRNMSNR"
FT   CDS           2679..4016
FT                 /product="Rehavkus-1_CFl_2p"
FT                 /translation="CYDCLGSHSSFSSFNTFFDNCVNDLRNALEGIDINPY
FT                 YCPAMAQKIKYLLPYFPLYSGIMISKFGFGKINASSSAVESEFNDIKHRLL
FT                 KYNLQSMRIDKFLTVHIQSFSGKAKLAMSEINRPVSLSTSNINTHYEPLQV
FT                 STEVVTHSKLNKKLSENSDESAEESCELAAEQNWRNKNEMKTKRVYLDAYP
FT                 GWDTFNINKKHVTLGVLQNGNISPVLKVGSSNIIVKNTCSFDSIVQILAAA
FT                 CIYDKFKETVDIATTDTFKFIKSFVQLGPTKKIYKTRAEILKNVTYFLQDT
FT                 LDIVTIDALSNIVNLCEYIFPENYSYIEICTCQTCHNIKIVKKCILPVNEE
FT                 ILNKYGYAKIVDAIEEGKVLKFRCSKCNEECFTSVSYGVQLFIESSITTAL
FT                 NDIPFSIQLNKQHYTHIGCIVYHGQNSQTSIGHYTAHIRNGTNWIVYDDML
FT                 R"
XX
SQ   Sequence 4018 BP; 1407 A; 625 C; 682 G; 1304 T; 0 other;
     ttacgtaaca tgtcatcata gacaatccaa ttagtaccat tacgtatatg cgcggtgtaa        60
     tgaccaattg acgtttggga attttgtcca tggtacacaa tgcatccaat atgagtataa       120
     tgttgtttat ttaattggat agaaaatgga atgtcattca aagcggttgt gatcgaagat       180
     tcaataaata gctgtacact gtatgatacg ctcataaaac attcttcatt atatttgcta       240
     catcgaaatt ttaaaacttt tccttcctct attgcatcaa caatttttgc gtaaccatat       300
     ttatttaata tctcctcatt tacaggtaaa atacatttct taacaatttt tatgttgtga       360
     cacgtttgac atgtacatat ttcgatgtag ctgtaatttt ctgggaatat atattcgcat       420
     aaattgacaa tgttcgataa agcatctatt gttacaatat caagagtatc ttgtaaaaaa       480
     tatgtgacat ttttcaaaat ttcagctcgc attttataaa tcttgttagt cggacctaat       540
     tgtacaaagg attttataaa tttaaaggta tctgtcgtcg ctatatcgac agtttcttta       600
     aatttatcgt atatgcatgc cacggcgaga atttgcacaa tgctatcaaa gccacatgta       660
     tttttgacaa ttatgttgct agatcctact ttatattcta cggtactcgc agaggcactg       720
     ctgcgttcac gcgagttgtg aaacaagtga atttagagaa gaattgcgtt tttcacttgt       780
     ttcacagttc gcgtgaacgc agcagtgcga gtaccgtaga atataaaata tataacaaat       840
     aatcagtgaa aacagtgttt tgaaatcctt ctgagcgtag gtatacccca tcctgacagt       900
     attatatgct ttatttttta ccacattatt cttattttcg tgtcatgtta cagtagaatg       960
     gccaatcacg tcgaacgttt gttagatgtt attctatcat cggattacag agatttgttg      1020
     gacgaatata acaaattagt tataccaagt aatgaaatat acgcaaagat aagtgcaatc      1080
     ttaaaaaacg atattaaacc gaaatatatt tatattatga taaaagagaa ccgatatgga      1140
     attctagata aaatacggaa atttcataat attgatactc cagattccat gcttttagaa      1200
     agtactacgt cttctcacga ttcttctaca cgagataaaa ctttggaatt taacgtcaca      1260
     ctttcacaca aagattggat tagcatgtct cctaaagatg tattatattt tgataaaaaa      1320
     cagaattctc gcaattattg tatattacag cgtaaagttt ggacggataa aatgtatgca      1380
     gctatttata aagctacaaa gataccgtgc gcgttggttt tcaaaaattc taaaatttcg      1440
     gacactggca tatatcttac cattaaagtc atgtaaagaa tgcgactgca tttttttggg      1500
     ccatattgtt aacaagcctc cgcctgaagc cgatgttata atggaatgta agattagtaa      1560
     ctttgatgaa tctgtaagac acgagagaaa acgtcagctt aagggacaga gaagagtaga      1620
     ggtatccaaa atactagcag aaaacagtga attaccctgt cgatggcgta gagcggaagc      1680
     aaataaactc atgaacttag gcgatccgga acctccgcat ttatctaata acagggtatt      1740
     gcgaaaagct aaacaagaga gacatgatat taatttaggc gcaaatgacg aaacagatcc      1800
     cataaagaat attcataaaa tgaaatataa attacatgcc ggtactatac atctcattag      1860
     atccgttttt cgttcattat tggactctgg aacaaatagc aatatatatg caatatccaa      1920
     attacatttc aatagatgct actggatcct tggtaaaaaa attaaaatta ccaaatggag      1980
     aattgtcaag tcatatatac ttgtatcaaa ttgtatgcga aactccaacc gcaaagatgc      2040
     caatgtttca aatgttaagc gctgcacagc atacgaatgc gattctttat tggctattag      2100
     aaatatgtcg aatcggtagt ttgcataaaa aaagttttcc atgtccacaa caagtagtag      2160
     tttgtgattt tgacagagca ttaatgggtg ctattgtaag agcttttgga aattgtaatg      2220
     atattaagga atatttatcg atgtttctta ttgattgtga ataagcagga aagaatgcca      2280
     acatgttttt tgcgtttaga tatttctcat tatgtcactt ttataactag atggaaaatt      2340
     tttatatctg tctatcctaa agtaaaaaaa ttttatataa tgatattgtg tttattaaca      2400
     aagacaacag atttcattga cctacaacaa atcgtgcgaa ctgcgattat cctctgttcc      2460
     agtgaaagtg ttggaaaaga tgagaatcag caagattctt tagctgaaaa atctcgaatt      2520
     ttgttatgta ataaaataag aggagttcct aatatagacg aaattgccga gcgaggtact      2580
     gagattgatc gcgatgtaaa cgaatcggat ttattattga tagatgttga tcaagaagat      2640
     atatatcaaa atagggaact taattctgct gataataatg ctatgattgt ctgggttctc      2700
     attcttcttt ctcttctttc aacacattct ttgataattg tgttaacgac ttgcgtaatg      2760
     ctcttgaagg tatagacata aatccatatt attgtccagc aatggcgcaa aaaattaagt      2820
     acttgttacc atattttcca ttatattccg gaataatgat atctaaattt ggatttggca      2880
     aaataaatgc aagttcatcc gcagtcgagt ctgaatttaa cgatatcaaa catagactat      2940
     tgaagtataa tttgcaatca atgcgaatag ataaattttt aacggtacat attcaatctt      3000
     tctccggtaa agcaaaatta gctatgtcag aaattaacag gccagtatct ctatcgactt      3060
     caaacattaa tacgcattat gagccactac aagtttcaac agaagttgtt acacattcga      3120
     aattaaataa aaaactgtcg gaaaattctg atgaatcagc tgaggaatct tgtgaattag      3180
     cggcggaaca gaattggcga aataaaaacg aaatgaaaac taaacgtgtt tatctagatg      3240
     catatcccgg ttgggatacg tttaatatta ataaaaaaca tgttacttta ggtgtgttac      3300
     aaaatggcaa tatttctcct gttttgaaag taggatctag caacataatt gtcaaaaata      3360
     catgtagctt tgatagcatt gtgcaaattc tcgccgcagc atgcatatac gataaattta      3420
     aagaaactgt cgatatagcg acgacagata cctttaaatt tataaaatcc tttgtacaat      3480
     taggtccgac taaaaagatt tataaaacgc gagctgaaat tttgaaaaat gtcacatatt      3540
     ttttacaaga tactcttgat attgtaacaa tagatgcttt atcgaacatt gtcaatttat      3600
     gcgaatatat attcccagaa aattacagct acatcgaaat atgtacatgt caaacgtgtc      3660
     acaacataaa aattgttaag aaatgtattt tacctgtaaa tgaggagata ttaaataaat      3720
     atggttacgc aaaaattgtt gatgcaatag aggaaggaaa agttttaaaa tttcgatgta      3780
     gcaaatgtaa tgaagaatgt tttacgagcg tatcatacgg tgtacaacta tttattgaat      3840
     cttcgatcac aaccgctttg aatgacattc cattttctat ccaattaaat aaacaacatt      3900
     atactcatat tggatgcatt gtgtaccatg gacaaaattc ccaaacgtca attggtcatt      3960
     acaccgcgca tatacgtaat ggtactaatt ggattgtcta tgatgacatg ttacgtaa        4018
//
ID   Rehavkus-1_DA repbase;    DNA;    INV; 6401 BP.
XX
AC   .
XX
DT   30-APR-2006 (Rel. 11.04, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   This is a recently transposed Rehavkus-1_DA DNA transposon - a
DE   consensus sequence.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus group; FB; FB4; NOF; Rehavkus-1_DA.
XX
NM   Rehavkus-1_DA.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6401
RA   Kapitonov V.V., Gentles A.J. and Jurka J.;
RT   "Rehavkus-1_DA, a family of Rehavkus DNA transposons from the
RT   fruit fly Drosophila ananassae genome.";
RL   Repbase Reports 6(4), 191-191 (2006).
XX
DR   [1] (Consensus)
XX
CC   Rehavkus-1_DA belongs to the Rehavkus group of the MuDR
CC   superfamily of "cut and paste" DNA transposons. Transposons from
CC   this group are widespread in different metazoa, including
CC   insects, sea squirts, sea urchin and fish. The genome harbors
CC   several copies of this transposon. Its 1.2-kb inverted termini
CC   are composed of a 79-bp terminal inverted repeat and 282-bp and
CC   102-bp subterminal minisatellite-like units. The transposon is
CC   flanked by a 9-bp target site duplication and encodes a 1036-aa
CC   Rehavkus-1_DA transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           1424..4531
FT                 /product="Rehavkus-1_DAp"
FT                 /translation="MPSKTHIDVSEIVDTLCLFNIFENETGALKSRNDSVW
FT                 KEASDRLKTKISAPTLNVYVRINRNNMLTLIKRRCGITENSINETVNSTLP
FT                 EDDPEFQISEVHGNGPLPNLFLTLELDEEVWGSIAPIKGKNEEVKDLRPKN
FT                 YLQPGWTDIIAKALQEKVPLPCAFNFKKAKISGKEENIWLKIEGYCSECSS
FT                 LFKGHCLVEPDPNLGISISVTVPDTRGIPHNQKRRCTGLKRLAIGHELLHK
FT                 KASLWRKEATKEMKDGDPEPSYIPKLPTLRKLREEAINRSLGINKGHDPIS
FT                 ALYLKKYEGELAGCILDIGLDEFYCIYCTPAQIKTYNAQIKRVRKISVDAT
FT                 GSVVLPIVKPHGDTSYVFLYQVVMEGEDGICPVFQMLSAKHDTASIQFWLS
FT                 RFMSKSGIYPPEVVCDFSLALLNAVSLSFNDCRLHTYMSSCFEALSCESSR
FT                 IPRSYIRLDIAHLIKMMCRKNVFKGKLPNVKDFYIRCIGVTTTCETKKSFK
FT                 KILKSILIVATSESSGLNKEGENYASQNNENFLLQKIATFTAPEYDEDYEN
FT                 SITNTPEELEPEGENEGINEFIKNILRSAEKKASKCKSSRSRPNPYFLPEL
FT                 VKPLIKLSQYFILWTNVMKNKFTSNYNVGSSALVEAYFKDLKKSDMSIFSR
FT                 PVRADKFVTQHIRCIEAACKLERAATKRKTMKTPAFIEDKKLKLDDKIDAG
FT                 HLLEEENWKIKNKAKNTQQLEIEDEEKPRGKYLKKCPNLEMIYNRPYRRKK
FT                 DAILQNGGALGPIWIEEKSINLKNTCPFDSLVEILATAYMDNIYYKRAIDE
FT                 EKDNSIILFSKKYAIDGISGELYCDRGRILTKIFSEYNSVVYCEANIGTFI
FT                 KKVMEGIPSLQKKNVHENGNQSCNNMINCLECLELVDAEKISSLGVHDGLI
FT                 ATILDYFAPKNGRCKDCGVSTISHAQPGPHVIIDMEFAFDSFQRELYANAP
FT                 GSATLQQLPEKIKLQQKTYILSGAVEYVPVSGSGIGHYIAYCRRITGLWEA
FT                 HNDFTKQAKHFTATNTSMKIHIVFYTEADV"
XX
SQ   Sequence 6401 BP; 2264 A; 1005 C; 1104 G; 2028 T; 0 other;
     agctacgaga agttgggtcg ggtaaaatta tattttttgg aaaaaaaggg tgcaatcgat        60
     tgcccatcaa atgaccacaa atgaccatca atattttgaa atgaccacct cccgtttgga       120
     aaatattcaa aaatgaaaat tttcgaaaaa ttttcgaaaa ttttaaaatt tgactttttg       180
     attttttttt tttttaaatc gaaataaacc aaaatgacca ccaatggtca tcttttagaa       240
     ttttgaaaaa acttttagtt tttgaaatat ttaagtgttc agtttatctc atttttttca       300
     caggtaaaac aaaatttcaa aaaaaaaact actgaaatcg ttttccaata gtgtgataaa       360
     caatgaccat caatattttc aaatgaccac ctaccgtttt gaaattattt aaaattgaac       420
     atagttaaaa atttttcaaa aatttcaaaa tcgacttttt gaattttttt ttttcaatat       480
     cgaaataaac gcaattgacc acaaatggac atcttttaga attttgaaaa aactttcagt       540
     ttttaaaata tttaagtttt tagttttggt cattttttgg ccaggtaaaa aaaaaattca       600
     aaaacaaact actgaattcg ttttccatta gtgtgataaa caatgaccat cttttaaaat       660
     tttaaaataa catttacttt tcgagatact tgattctcat agtcttaaaa ataaagaaat       720
     taaaaatcca aaagatgacc atcatggccc atagcctaaa acatataaat taaaaaaaaa       780
     aattgatttc catcattgcc catcccttaa aacttaaaaa atgaacaaaa aactatatgc       840
     ccatcatggc ccacatctta aaacttaaaa attttacaaa aaaaactatg cccttcattg       900
     cccatccctt aaaacttaca aattttacat aaaaaactat gcccatcatt gcccacatcg       960
     taaaacttac aaattttaca taaaaaacta tgcccttcat tgcccatccc ttaaaactta      1020
     caaattttac ataaaaaatc atgcccacca ttccgcatct cttagaactt gaaaatttta      1080
     caaaaaaaat ctatgctcag catggccaac agcttaaaac ttaaaaattt tacaaataaa      1140
     tctatgccca ttgctaataa cttaaaaatt taaataatgt gtgagttctt gcaatttgaa      1200
     cattggaagt aaaatattaa gaagggtttt gttaagaaaa atatatcatc taatttttat      1260
     tacttataaa ctaggtttcg atagttccta aacagaatta tttgtctttt ccgatgatct      1320
     attggtcatt cagccgtgct gagaacgacc aattgaatct tccccgtgaa aagattataa      1380
     gctgtatata atttaactgt tttgaaacct ggaatacacg aagatgccat ccaagaccca      1440
     cattgatgtt tctgagatag tggatactct ctgcctcttt aatatttttg aaaatgaaac      1500
     tggtgcgtta aaatcaagga atgactctgt ttggaaagaa gctagcgacc gactaaaaac      1560
     caaaatcagt gccccgactt taaatgtata cgttcggata aatcgaaata atatgttgac      1620
     ccttataaag cgaagatgtg gtattacgga gaactcaatc aatgaaactg ttaactcaac      1680
     gcttcccgaa gatgatccag aatttcagat cagcgaagta catggaaatg gacctttgcc      1740
     caatctgttt ttaacattag aattggatga ggaagtttgg ggatctatcg ctcctatcaa      1800
     aggaaaaaat gaagaagtaa aggatttgcg accaaaaaat tatttacaac caggatggac      1860
     tgacataatc gcaaaggcct tgcaggaaaa ggttcccttg ccttgtgctt ttaattttaa      1920
     aaaagcaaag ataagcggaa aagaggaaaa catctggctc aaaattgaag gttactgcag      1980
     tgagtgcagt tcactgttta aaggacactg tcttgtggaa cctgatccaa atttgggaat      2040
     aagtatttcg gttacagtac cagatactcg tggcatacca cataaccaaa aacggagatg      2100
     cactggatta aaacgattgg caattggcca tgagttgctg cataagaaag cgtcgttgtg      2160
     gagaaaggaa gccacgaagg aaatgaaaga cggcgatcct gagccaagtt atattcccaa      2220
     gttaccaaca ttaagaaaat tgcgcgagga agctataaat cgaagccttg gaataaacaa      2280
     aggacacgat ccaatctctg cattatattt aaaaaaatat gagggcgaac tagctggatg      2340
     catactggat attggtttgg atgagttcta ctgcatctac tgcactccgg ctcaaattaa      2400
     aacatataat gcgcaaatta aaagagtccg gaaaatatct gtggatgcca ctggaagcgt      2460
     tgttctgcca attgtgaaac ctcatggcga taccagctac gtgttcctat accaggtggt      2520
     tatggaaggg gaggacggaa tatgtcccgt atttcaaatg ctatcggcca agcatgatac      2580
     ggccagcatc caattctggc tgagtcgatt tatgtcaaaa tcgggcatat atccacctga      2640
     agttgtgtgc gacttttctt tggctttgtt gaacgctgtg agtttaagct tcaacgattg      2700
     tcgcctccat acatatatgt cgtcctgctt cgaagctttg tcctgcgagt cgagtcgaat      2760
     tccaagatca tatattcggc tcgacatcgc ccatcttata aaaatgatgt gccggaaaaa      2820
     tgtattcaaa ggaaaattgc ccaacgtcaa ggatttttac ataagatgca ttggagttac      2880
     aacaacctgc gaaaccaaaa aaagttttaa aaaaatatta aaatcgatcc ttattgtggc      2940
     aacgagcgaa tcctcaggat taaataagga gggagaaaac tacgccagcc agaataacga      3000
     aaattttctt cttcaaaaaa ttgctacatt tacggcaccg gaatatgatg aagattatga      3060
     aaattctatt accaatacac cggaggaatt ggagccagaa ggagaaaatg aaggaattaa      3120
     tgaatttata aaaaacattt taagatccgc agaaaaaaaa gccagtaaat gtaaatcatc      3180
     cagaagtcgt ccaaacccat attttcttcc ggaattggta aagcccctca tcaaattatc      3240
     gcaatatttt attttatgga caaacgttat gaaaaacaaa tttacatcga attataatgt      3300
     tggatcgtct gcattggtgg aggcttactt caaagattta aaaaaatccg acatgagcat      3360
     cttcagtaga cctgtgcgcg cagataaatt tgtaacacag cacatccgat gcatcgaggc      3420
     agcctgcaaa ttggagcgtg cagcaacaaa aaggaaaaca atgaaaacac cggccttcat      3480
     tgaggacaaa aaattaaaat tagatgataa aatcgacgca ggccatctcc tagaagagga      3540
     aaattggaaa attaagaaca aagcgaagaa cactcaacaa ttagaaattg aagatgaaga      3600
     aaagcccaga ggaaaatatt taaaaaaatg tccaaatctc gaaatgatat acaaccgtcc      3660
     ctatagaagg aagaaggacg cgatattgca aaatggcggt gcacttgggc ccatatggat      3720
     tgaagaaaaa tcaatcaatt taaaaaatac ttgccctttt gattcattag tggaaattct      3780
     agcgactgca tatatggaca acatctatta caaacgggct attgacgagg aaaaggacaa      3840
     ttcaataata ttattttcaa aaaaatatgc cattgatgga ataagtggag aactatattg      3900
     tgatagagga cggattctta caaaaatatt ttcggaatat aactccgttg tgtactgcga      3960
     agcgaatatc gggacgttta ttaaaaaggt catggaagga ataccaagcc tgcagaaaaa      4020
     aaacgttcat gaaaatggca accagagctg taataatatg ataaattgcc ttgaatgctt      4080
     agagctggta gatgctgaaa aaataagcag cctgggagtt catgatggac taatcgccac      4140
     tattcttgat tattttgcgc caaaaaatgg tagatgcaaa gattgcggtg tgagtacgat      4200
     ttcccatgca cagcctggac cacacgtcat catagacatg gaatttgcgt tcgacagctt      4260
     tcaacgagaa ctatatgcca atgcgccagg atcagctaca ctgcagcagc ttcccgaaaa      4320
     aattaaatta caacaaaaaa cttatatttt aagtggagct gttgaatatg ttccggtatc      4380
     aggatcagga attggacatt atattgctta ctgccgcagg ataacaggat tatgggaagc      4440
     gcacaatgat tttacgaagc aagcgaaaca ttttacggca acaaatacga gtatgaagat      4500
     acacattgtt ttttacacgg aggcagatgt ttaatttgaa taaaagctaa taaaaaattt      4560
     taaaaaaatt tataattatg tttttcttgt ataaaaagat cttatataat aatggttata      4620
     ctcgtatata taggctggtt tatgatctgc taaaatatat tttatgacgc tttttttatt      4680
     agtttataag ggcataacat ggaaaatctg ggaaatatcc tcatctggga aatgtttatt      4740
     ggttacctgt ttgggtttta agtccttccc agttaggaaa ccccaaaaaa tttgcggtaa      4800
     tatgcttttc ccaaaccgat cccttttttc caaaccgcat aattatgcaa ttgaaacttt      4860
     atggtgtact gtaggtagta catacatatt tcgtatgatt ttttccattt cctgttttaa      4920
     gtgttttccc caactaccgt aactatcttt tacgacctgt gtgtgtatat attctggatt      4980
     tccccatgac aggtataagt tgaacatttt tcaaaaatga cgagttagac tttataagta      5040
     ataaaaatta gatgatatat ttttcttaac aaaacccttc ttaatatttt acttccaatg      5100
     ttcaaattgc aagaacctac acattattta aatttttaag ttattagcaa tgggcataga      5160
     tttatttgta aaatttttaa gttttaagct gttggccatg ctgagcatag attttttttg      5220
     taaaattttc aagttctaag agatgggcaa tggtgggcat gattttttat gtaaaatttg      5280
     taagttttaa gggatgggca atgatgggca tagtttttta tgtaaaattt gtaagtttta      5340
     agggatgggc aatgaagggc atagtttttt ttgtaaaatt tttaagtttt aagatgtggg      5400
     ccatgatggg catatagttt tttgttcatt ttttaagttt taagggatgg gcaatgatgg      5460
     aaatcaattt ttttttttaa tttatatgtt ttaggctatg ggccatgatg gtcatctttt      5520
     ggatttttaa tttctttatt tttaagatgt gggccatgat gggcatatag ttttttgttc      5580
     attttttaag ttttaaggga tgggcaatga tggaaatcaa tttttttttt taatttatat      5640
     gttttaggct atgggccatg atggtcatct tttggatttt taatttcttt atttttaaga      5700
     ctatgagaat caagtatctc gaaaagtaaa tgttatttta aaattttaaa agatggtcat      5760
     tgtttatcac actaatggaa aacgaattca gtagtttgtt tttgaatttt tttttttacc      5820
     tggccaaaaa atgaccaaaa ctaaaaactt aaatatttta aaaactgaaa gtttttcaaa      5880
     attctaaaag atgaccattt gtggtcaatt gcgtttattt cgatattgaa aaaaaaaaat      5940
     tcaaaaagtc gattttgaaa tttttgaaaa atttttaact atgttcaatt ttaaataatt      6000
     tcaaaacggt aggtggtcat ttgaaaatat tgatggtcat tgtttatcac actattggaa      6060
     aacgatttca gtagtttttt ttttgaaatt ttgttttacc tgtgaaaaaa atgagataaa      6120
     ctgaacactt aaatatttca aaaactaaaa gttttttcaa aattctaaaa gattaccatt      6180
     ggtggtcatt ttggtttatt tcgatttaaa aaaaaaaaaa tcaaaaagtc aaattttaaa      6240
     attttcgaaa atttttcgaa aattttcatt tttgaatatt ttccaaacgg gaggtggtca      6300
     tttcaaaata ttgatggtca tttgtggtca tttgatggac aatcgaatgc accctttttt      6360
     tccaaaaaat atcattttac ccgacccaac ttctcgtagc t                          6401
//
ID   Rehavkus-1_DY repbase;    DNA;    INV; 5919 BP.
XX
AC   AAEU01000045;
XX
DT   30-APR-2006 (Rel. 11.04, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   This is a recently transposed copy of the Rehavkus-1_DY DNA
DE   transposon - a fossilized copy.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus-1_DY; Rehavkus group.
XX
NM   Rehavkus-1_DY.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5919
RA   Kapitonov V.V., Gentles A.J. and Jurka J.;
RT   "Rehavkus-1_DY, a family of Rehavkus DNA transposons from the
RT   fruit fly Drosophila yakuba genome.";
RL   Repbase Reports 6(4), 192-192 (2006).
XX
DR   EMBL/GenBank/DDBJ; AAEU01000045; Positions   10882    4964.
XX
CC   Rehavkus-1_DY belongs to the Rehavkus group of the MuDR
CC   superfamily of "cut and paste" DNA transposons. Transposons from
CC   this group are widespread in different metazoa, including
CC   insects, sea squirts, sea urchin and fish. Its 1217-bp inverted
CC   termini are composed of a 290-bp terminal inverted repeat and
CC   133-bp subterminal minisatellite-like unit. Similar structure of
CC   termini characterizes all Rehavkus transposons identified so far
CC   in different species. The transposon is flanked by a 9-bp target
CC   site duplication and encodes the 969-aa Rehavkus-1_DY
CC   transposase. The ~1050-bp termini of Rehavkus-1_DY are 79%
CC   identical with termini of the FB4/FB transposon identified
CC   previously in the D. melanogaster genome. The TPase-encoding
CC   region is 86% identical to a portion of the FB/NOF transposon
CC   from D. melanogaster that codes for a hypothetical protein. Due
CC   to detection of this protein conserved in diverse Rehavkus
CC   transposons that were not significantly similar to any other
CC   transposases, these transposons were reprted in 2006 as a new
CC   superfamily of "cut and paste" transposases [1]. However, in a
CC   few years, as a result of massive increase of the number of
CC   diverse proteins in GenBank, Rehavkus transposase sequences have
CC   converged (by PSI-BLAST) with MuDR transposases in the same set
CC   of similar sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           1902..4808
FT                 /product="Rehavkus-1_DYp"
FT                 /translation="MPTKSHVDVPALVEAFCNGDIFTETGTLKPRSDNVWM
FT                 DISNKFQGTISAKTLNLYARINRNGIITMVKERCGIKQLDITGNNSTLNST
FT                 SPDDDPEFQIIEAVKNGPLPILYINLELDQELWTSIAPKMDQKTDLRSKSY
FT                 LQRNWTDVIAKLMYEKVPLPCAFNFKKAKLSDEVDNIWLRIEGYCNECSSI
FT                 LKGHCLVKPDEHCGISISVSVPDTRGIPHNSKRRCTGSRRLEIGNELLLKK
FT                 AALWRKEATDNMNDDDPEPSFIPKLPTLRKLREEATNRHLGITKDRDPVSS
FT                 LYLKKYEGELAGCILDIGLDEFFCIYCTGAQIKTYASRIKTIRKISVDATG
FT                 SVVLPIQKPNGDSSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSR
FT                 FISKSGHFPLEVVSDFSLALLNGISLSFNECRIKTYIQKCFQSLLTDERTD
FT                 LPPCFIRLDIAHLIKMICRKNVFKGKLPNIKDFYVRCIGLATTCETKDCFA
FT                 ETIKSVLIVALSQSSGEDEKGHFLSSYRNERNLLTRIATFAAQDHDEKHEE
FT                 NFIPEDQEEVDEDVSEFVLNIKNAAEEEALKCNSVRCRPNPYFLPDLMSPL
FT                 LKLCKYFVLWTNVMKEKFCSKYDVGSSALVEAYFKDLKNTDMSIFHRPVRA
FT                 DKFVVQHIRCIEAVCKLEQAAMKRKSVNIPTFIKEKTPKKLCREETKEFLE
FT                 EILEENEVEYLLQEENWKVKNKTIKPTENVEEDNGNDYINKETELVKRPKE
FT                 KPRGKYLKKCPNVELLYNRPLRRKRDEILNNGGSMGPLWIGKQLLQFKNTC
FT                 PLDSLVEILSTAYIDNFYYKNQLDDFYADNLTIELVKKYAVEGVTSSLYRE
FT                 RGLVLKSFFDEKHQTIHCHANIGAFIEKALNGVPSASSHRIHNKNKNDCEN
FT                 KKKYILSGAIEYVPSPGGAIGHYIAYCRRIIGSWEVHNDMCRQWRKFTALN
FT                 TKMTLHILIYTRKN"
XX
SQ   Sequence 5919 BP; 2083 A; 956 C; 1016 G; 1864 T; 0 other;
     agctcaaaga agctgggtcc gccaaaatcg aatttttgaa atttgaaagg tggaatcgtt        60
     tgaccatcgg ttgaccatgt ttgaccacca attacttttt tttgaccacg tccagttttg       120
     aagatatgga atttcgaaaa ttttcgaaaa ttttcgaact tcaaaaagtt gacttttttg       180
     aacttttttt tttttaaatc gcaataactt cgtttgacca cgtttgacca ccctttagaa       240
     ttttgaaaaa acttttagtt tggaaaatat aagcacttaa gcaattaagc atttttcata       300
     cctcaaaact aaatattttc aaacaaaatc gtttgaccat cctttaaaaa tgctttttat       360
     cgtttgacca ccctttaaaa tttttttttt tcatttgctt acccttaaaa aaaaatattt       420
     tcgtttgccc aactcttaaa actaaatatt ttcaaaaaaa aacttttgac catcctttaa       480
     aattgcattc tatcgtttga ccacctttca aaaattattt ttttcgtttg cttaccctta       540
     aaaaaaaata aaaacgattt cccacctctt aaaactaaat attttcaaaa aaaaactttt       600
     gaccatcctt taaaattgca ttctatcgtt tgaccaccct tcaaaaatta tttttttcgt       660
     ttgcttaccc ttaaaaaaaa taaaaacgat ttcccacctc ttaaaactaa atattttcaa       720
     aaaaaacttt tgaccatcct ttaaaattgc attctatcgt ttgaccaccc ttcaaaaatt       780
     atttttttcg tttgcttacc cttaaaaaaa aataaaaacg atttcccacc tcttaaaact       840
     aaatattttc aaaaaaaaac ttttgaccat cctttaaaat tgcattctat cgtttgacca       900
     cccttcaaaa attatttttt tcgtttgctt acccttaaaa aaaataaaaa cgatttccca       960
     cctcttaaaa ctaaatattt tcaaaaaaaa acttttgacc atcctttaaa attgcattct      1020
     atcgtttgac cacccttcaa aaattatttt tttcgtttgc ttacccttaa aaaaaatttt      1080
     caaataaaat tcaaataaat cttacaattt tggcaaaata ctctctcttt cttttattgt      1140
     ttcttaaaaa taattaattt tgttaacaac aattttttaa caataattat tttgtaaact      1200
     ttatattata taaatttgca cctgtgacat agggttaatt ttttaggtaa attgtttttt      1260
     tttacattac aggtacttta aagaatccac aattaaaaat ctctttcctc ctcgattctc      1320
     ataatatgta tataaatcgt catccgaaac tcataattag aatatatttt ttgtgtgaag      1380
     actgaaaaag ttgtgcgtga atttaacaac gttttgtgct gaaaaagtta aagtcgtact      1440
     gtttttaaga aaagtgcttg cgttctaata tttgaaccct tctaaatttt gttgacagtc      1500
     tttttaaaga cttgcaattt ttggaatatt gatttgtgtt ctcgtgaatt ttgttgacag      1560
     tctttttaaa gacttgcaaa attaaaattg accagatttt acaatttagt aaagtttcat      1620
     ttgtgtctat tcctttgttt gttggaaaag gaatttaagt gaagtgggta agcacaaaat      1680
     tcaaaataaa tttgtgtact tgctttctat tctaaagatt ttctttaaat ctaaagatct      1740
     gcattttcaa tattgattta tttttttaca aaccagagtc cttgcttttt ttgcgtaatc      1800
     ccttaaacat ttgcagcgca attgtgaaaa gtgctaatta aacattagtg taaaacgaca      1860
     atttttttaa ctgcataaaa ggaataaatt ttattaaaag gatgccgacc aaatcgcatg      1920
     tggatgtccc cgccttagtg gaggcatttt gcaatggtga tatctttacg gagactggaa      1980
     ctcttaagcc aagaagcgat aatgtttgga tggatattag taacaaattt caaggaacaa      2040
     tcagcgcgaa gacgctaaat ttgtacgcca gaattaatcg gaatggcatt ataacgatgg      2100
     tgaaagaacg atgtggcatt aagcagctgg atatcactgg caataatagc actttaaata      2160
     gcacatctcc cgatgatgac ccagagttcc agatcattga agctgttaag aatggaccat      2220
     tgcctatttt atatattaac ctggaattag accaggaatt gtggacatcg attgccccta      2280
     aaatggacca aaaaacggat ttgagatcaa aaagctatct gcaacgtaac tggacggatg      2340
     taatagccaa gctgatgtac gaaaaagttc ctcttccgtg tgcatttaac ttcaagaagg      2400
     caaaactttc cgacgaagtg gataatatat ggcttagaat tgaaggctat tgcaatgagt      2460
     gcagctcaat tttaaaagga cattgccttg tgaaacccga tgaacattgc ggcatatcga      2520
     tatccgtttc ggtaccggac acacgaggta ttccccataa ttcaaaacga cggtgcactg      2580
     gatccagaag acttgaaatt ggcaacgaat tgcttttaaa aaaagccgca ttgtggagga      2640
     aggaagcaac cgacaatatg aatgatgacg acccagaacc aagtttcatc ccaaagttac      2700
     caactcttcg aaaacttcgt gaagaggcaa ccaataggca cctcggaatc accaaggatc      2760
     gtgatccagt ttcatcatta taccttaaaa agtatgaggg tgaattggcc ggatgcatcc      2820
     ttgatattgg actggatgaa tttttttgca tatactgcac gggagcccaa ataaaaacat      2880
     atgcatcaag gataaaaacc attagaaaaa tttctgtcga cgcaactgga agcgtcgtgt      2940
     tacccattca aaaaccgaac ggcgactcaa gttatgtatt cttataccaa attgtgatgg      3000
     agggcgacga cagcatattt ccagtttttc aaatgctgtc ggctaaacat gatacagcca      3060
     gcatacagtt ttggctgagc cgatttattt cgaaatcagg acattttcca ctggaggttg      3120
     tgtccgattt ttccttggct ttgctcaatg gaataagctt gagctttaac gagtgccgca      3180
     ttaagacata tattcaaaaa tgttttcaaa gccttttgac ggatgaacga acggatctac      3240
     caccctgctt tattcgactt gacatcgccc acctcataaa aatgatatgc cggaagaacg      3300
     tttttaaagg aaagttgccg aacataaagg atttttacgt aagatgcatt ggtctagcaa      3360
     caacgtgtga gacaaaggac tgttttgcgg aaacaataaa atcagtgctg attgtcgcac      3420
     taagccaatc ctcaggagaa gacgaaaaag gacactttct ttcgagctac aggaacgaaa      3480
     gaaatctgct caccagaata gctacatttg ctgcccagga tcacgatgag aaacatgaag      3540
     aaaatttcat accagaggac caggaggaag ttgacgagga cgtttcggag tttgtcctca      3600
     atataaaaaa cgctgccgaa gaagaagcgt taaaatgcaa ttctgtccgc tgtcggccaa      3660
     atccatattt tctgcctgat ctgatgtcac cattacttaa gttgtgcaaa tattttgtac      3720
     tatggaccaa cgtaatgaaa gaaaagttct gctcgaaata tgatgtcggc tcttcggcac      3780
     ttgtggaagc ttattttaag gatttgaaaa acacagatat gagtatcttc caccgaccag      3840
     tgcgagcgga taaattcgtt gtgcaacata ttcgctgcat cgaagctgtt tgcaagctgg      3900
     aacaagccgc catgaaacga aagtccgtta atattcctac ctttataaaa gaaaaaacac      3960
     ccaaaaaatt gtgccgtgag gaaaccaagg aattcctgga ggaaattctt gaagagaacg      4020
     aagtggaata ccttctacaa gaagaaaact ggaaggtaaa aaataaaacg ataaagccca      4080
     cggaaaatgt cgaagaagac aatggaaatg attatataaa caaggaaacg gaattagtga      4140
     aacggcctaa agaaaaacca agaggaaaat atctcaaaaa atgtcctaac gtggaattat      4200
     tgtacaatcg acctcttcga aggaaacggg acgaaatatt gaataatggt ggatcaatgg      4260
     gacctctctg gattggcaaa caattattgc aatttaaaaa tacttgcccg cttgactccc      4320
     tcgtggaaat attgtcgacc gcgtacatcg acaattttta ttacaaaaac caactggatg      4380
     atttctacgc tgacaactta acgatagaat tggtaaaaaa gtatgccgtc gagggagtta      4440
     cttctagttt gtaccgcgaa aggggtctgg tcctgaaaag tttttttgat gaaaaacacc      4500
     agacaataca ttgtcacgcc aatattgggg cttttattga gaaagcccta aatggagtac      4560
     ccagtgcgtc aagtcatagg atccataaca aaaacaaaaa tgattgcgaa aacaaaaaga      4620
     aatatattct aagtggtgcc atagaatacg ttccttcgcc aggaggtgca atcggacact      4680
     atattgcata ttgccgcaga ataattggat cttgggaagt acacaatgat atgtgcagac      4740
     aatggagaaa gtttacagcg ttaaatacaa aaatgacact ccacattttg atatacacga      4800
     ggaaaaatta atatattaat ataattaata aataaaattt atataatata aagtttacaa      4860
     aataattatt gttaaaaaat tgttgttaac aaaattaatt atttttaaga aacaataaaa      4920
     gaaagagaga gtattttgcc aaaattgtaa gatttatttg aattttattt gaaaattttt      4980
     tttaagggta agcaaacgaa aaaaataatt tttgaagggt ggtcaaacga tagaatgcaa      5040
     ttttaaagga tggtcaaaag tttttttttg aaaatattta gttttaagag gtgggaaatc      5100
     gtttttattt ttttttaagg gtaagcaaac gaaaaaaata atttttgaag ggtggtcaaa      5160
     cgatagaatg caattttaaa ggatggtcaa aagttttttt tgaaaatatt tagttttaag      5220
     aggtgggaaa tcgtttttat tttttttaag ggtaagcaaa cgaaaaaaat aatttttgaa      5280
     gggtggtcaa acgatagaat gcaattttaa aggatggtca aaagtttttt tttgaaaata      5340
     tttagtttta agaggtggga aatcgttttt attttttttt aagggtaagc aaacgaaaaa      5400
     aataattttt gaaaggtggt caaacgatag aatgcaattt taaaggatgg tcaaaagttt      5460
     ttttttgaaa atatttagtt ttaagagttg ggcaaacgaa aatatttttt tttaagggta      5520
     agcaaatgaa aaaaaaaaat tttaaagggt ggtcaaacga taaaaagcat ttttaaagga      5580
     tggtcaaacg attttgtttg aaaatattta gttttgaggt atgaaaaatg cttaattgct      5640
     taagtgctta tattttccaa actaaaagtt ttttcaaaat tctaaagggt ggtcaaacgt      5700
     ggtcaaacga agttattgcg atttaaaaaa aaaaaagttc aaaaaagtca actttttgaa      5760
     gttcgaaaat tttcgaaaat tttcgaaatt ccatatcttc aaaactggac gtggtcaaaa      5820
     aaaagtaatt ggtggtcaaa catggtcaaa cgatggtcaa acgattccac ctttcaaatt      5880
     tcaaaaattc gattttggcg gacccagctt ctttgagct                             5919
//
ID   Rehavkus-1_NVi repbase;    DNA;    INV; 8458 BP.
XX
AC   AAZX01001051.1;
XX
DT   14-MAY-2009 (Rel. 14.06, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   Rehavkus DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus; FB; FB4; NOF; Rehavkus-1_NVi.
XX
NM   Rehavkus-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-8458
RA   Bao W. and Jurka J.;
RT   "Rehavkus DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1158-1158 (2009).
XX
DR   [1] (Consensus)
XX
CC   TIR is ~960 bp long, TSD is 9 bp.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(4576..4965,5110..5946,5808..6413)
FT                 /product="Rehavkus-1_NVi_1p"
FT                 /translation="MEENMLCRYTDSNLILVHSEFFEYRQCRHLLPNPCPI
FT                 AMAIIVLLGILLYTYMRILQQIYSKLATDLLLCADSPSSYDVLISMKQQRN
FT                 ATIRHQKLAYTQIKIISKQPEVSETFLISELKKWPDIFNNGGQKNKVTPHD
FT                 SDYAERDISNPYNYDELDFILEIPKHDVIDCLETKKKKEEWTEKIREKIKI
FT                 LKNLLCPFALNGHITKDKFKFYGRCSDCETGIFGGSNNNEDNLSIRVKTST
FT                 TYEIPHSKKLKQNGSRRREVKKVLRNQTASDYRESELGKIDTNYEPPDLNS
FT                 TVTLRKVKEEALDESIGYTEFKRTSITNKVFVNLCNIRKLSVNPFYTVYFS
FT                 DYQLQFWNEIQHKKLPLSFESTGGLLRKYKFYPGITSRTTYYYVMVVGIEK
FT                 KLYQYYKQFYPYTMFIDWWFIKKIQVLSWYNIKNNILLCNGCRNRKKIVPV
FT                 LQAILSIHHVLVIQEILEIPKEISTDGSLALQNAICQSFNKMTFKEYSAQC
FT                 FQVLLNQNQELPYCYYCHDVAHFLKSIADWKCMEQVNQNVRDFYLRSVGYS
FT                 TQVNKLEKFKDVVRSIVVIANSQLAEEGSEPHKHISKLIKVFKTYEHEIQN
FT                 IEKPAFTDDVPH*"
XX
SQ   Sequence 8458 BP; 2970 A; 1275 C; 1334 G; 2879 T; 0 other;
     agcaccgtaa agtacgaaaa taacttgcgg gaatcgcaat aaaaaaattt cattaattgc        60
     ggaattgtta acaacgttag taactgcaat taaaaaaaaa ctgcgggtgc tctcaatttt       120
     ttataaaaag taagaaactt tttagctagc ggcaaaacgt agatataccg ttttcccagc       180
     tcgtgccact tgtataacta ctagatcaat gcaaattgat cgcaatttaa ctgcgagtta       240
     tgaaaataat tgcggtttta cctaattcgc agtaattgtt gagtaatttg ttgcacaatt       300
     atttcaatca tttaggcgcc aaatccgggc tgtcgggcat tccacgttcc gcgtttgcgc       360
     agtctgtata gagtgtaggt ggcgtataga cgcttccgta gactctctgc aatcagcacc       420
     ataacctaaa attcttcagg tcaaacttca aagtttggat aattcaactc tattaaacga       480
     tccaatactt atcaaccttc ataaaatcag ttaactgctt atagcatcct cattgtcaat       540
     ggtggaactg gtaagatctt tttttttaaa cttaaattat aacaaataat cataaataat       600
     catctttaat tcatatttat aatcaagata ctctgcgttc agaatgaagt ggtcctactg       660
     ttttagtaat gacatcaacg catgaattag ctttgaaaaa cgcaaacagt ctccaaagga       720
     gtagaaatag caattactag atgtaaagtg catttcatct ctcagttact tcattagtta       780
     taaaaagata atagaatctg cttagattag ttaaagatga caaggatgga gtcgtggctc       840
     acaactattt ttgttcaagc gcaattgtca taataaatat ttggaaaaat taaaaagtgg       900
     cgatcaaatg gacacttcga gtgcttaagc aaatctgtgt gatttgttgc tattagtatt       960
     aaaagaagta tcttaaaatt gttactttca tcttcttgct ccgatcttta aacctttagc      1020
     acacattgct ataggtaaaa aaagtatttg caagtttgct aagtatttgc ttgttttttt      1080
     atagatacct tgttcaactc tgatcagctg tgccaactga atgccctggt gaaccagcag      1140
     caactggggt cgagaggaac aatcagcacc aattggagcc cgactttcta cattttaagc      1200
     ttactctact tgatgaaaaa atatatagtc caagatggat agtgcagttc tgcttgagtt      1260
     ggaatgcctg ttacaagcca gtaacgattt gtgcaagaaa tgtaagtact tgatctattt      1320
     gaaattccta atcgttctga tggaatagtt ttaagcatgg caaaatttat gatatataaa      1380
     cttgttttta taggagttga tgtacagagc gaagcttgtc aacttttttc aagaaatttt      1440
     tacaataact tctacaaaaa ttgtaacaga cgatgtagta aatagttgga aacggaacat      1500
     tcatcataac attaatcatg attgccaacg actgttagaa cttgctgaag atgataagga      1560
     tggtttcttt taggcattga ttcttttttt ggaacttggc acatttatat ttttattaaa      1620
     agtacaaggt agaaaatatt gtgcagaaca agcaatatat gaatgtggca atgtccagca      1680
     gagcaagtca tcagtcttcg tttcagataa aaagcatgtt tcaagagttt ttacaagttt      1740
     acaaggaata caggagttga aaagtatgaa gtccataaat ttgaataggt tttgaaattt      1800
     atttacatat ttcagttatt attgaaataa tctcgtaaag gtctgaaaaa ataatgtttt      1860
     aaaattaacc aaaattacat gtaattattt tacaaaaaaa aatgtattta ctctgtataa      1920
     acagtttttc ttgaataaaa cagttaacta aaaattagac agagctggtc taatttttag      1980
     tttactcttc ttggaatggc gaaatataat taagtcgttt cgttcttccc aaccagcatt      2040
     tggcaatttg ataaacgtgt aataatgcat tagtgaatca gtaccaaggt atggtaaatc      2100
     gaatgctatt actcttacta aattgtaatc ttcattacac aaataaagat aacctagaat      2160
     actatttaaa tagtattgcg tatttttatg tattgtaaaa ttagtctcca attttacaca      2220
     taaatattct tttattttgt atctgagtgt tgcttcattt ttacattcat aacattgttt      2280
     gctatttttc gaaaagtgta ttttaaaata gttttctcat tcagatattg atgaatcatc      2340
     tattgctgat tagtatttac agttcgttga tagtgattcc aagtgctgat taaaccaagt      2400
     gcttttaaac attataataa ctggatgata aaacttctac tatagagttg aaaaaacttg      2460
     atgtcgtgat agtaatttta tttcttttaa aagttcttgg tttcaaaaga ttataatttt      2520
     tattattttt cgttttttgc ttgatttgag ggtttttgat taatcagatc aatttctgga      2580
     cttttgttac attttttaat tgattctttt tgggtaagta tactttgact ttgatcatct      2640
     aacatattag tagtcaactc atgatcatgt tctttagtta aagaaatgtt caaatcacta      2700
     ataactgagt caacaattga tgaaatatct tgtttacaaa agctatctac agataactgt      2760
     gaatcactgt tggtagatga gaaactctct gaagtagtac aagaggtgct atcgctgtca      2820
     gaatccattt tgttcaatcc cattcagttt tcaaatttaa ataatctaat tcatcactta      2880
     ttttaggtac aactcttttt gatggattta ctatatttct tatactttct agattagttt      2940
     ctaaatagtc aatatttttt tgtaaataga tatctaccga tggtaaaggc ccactttcct      3000
     tttccaaaaa agattcaaaa tcacttttat aatgcttcaa taattcacca aaggattttt      3060
     cttagttatt actttcttta aataatattc tggtccacag aacgaattca acacagcatt      3120
     aaattaaatt tttggatatg tcttcattgc aatatgcatt cctttggcat tccatacctt      3180
     ctgttgcagt atattgtttt gctctcaaaa caatatcaat aatgtatttt aaaatgtgtt      3240
     gacatttagt ataatcgata tctaatacct tatttaaaac actgtcggaa tttgagattt      3300
     tttcacactc atcttttatg atgtttatat tttctttgct atacaatgga tctatgttgg      3360
     attcttttat tcttgaaata ggatctttaa aaaattcatg agtagtatca ctctgaaatt      3420
     cactaaaact tagtacaagc acttttaaaa gtatctcttc aaaatcatac aaaattgtct      3480
     gaaaactgag caatacaata caatatatat aaaaatattt tacagactgt agggaaattg      3540
     cactaaaaca atttcaattg caaatcttgg ctattagaaa tctgatgttt gtataaatta      3600
     aacactttgg taagagatct acctgacttt cttttaggta aaataaacat gatgttcaat      3660
     attcttcaaa tgatttgagt ccgttaaaaa catgatttgg agttatgtaa taattattac      3720
     gatagtctag tactaattta ccaggaatag gtaacgcact tcttcacact aaaatttcat      3780
     caaaaaatct gttcaatata gctgtactac tttcttctgt tgacagttgg caaataggaa      3840
     catatatatt atctattctt ataccaaaac tcaataaatt tatagattta gattctgttc      3900
     catctggaaa atgaaaaggt ttgcaaaaac atcctatatt cccaaacatg aattctttgt      3960
     ttttcgatgc actacgagca aactctatgg ctttcataga ccaatgaaaa atattgaatg      4020
     gaaaagttgt gacttctaaa ataatagact tgtacatgac attatttctc aaagtcagta      4080
     aatctctttc tttattacag ctttggtttt tttgttctgc agaactgatt gctttgacag      4140
     tgttgctatt attatcagat gttccacacg ccaccaagct ttgcaaatca aaaagtacat      4200
     tatttctatt taggcaacat acgattgaat gttgcgaatt gtcatttctt tttcgcaagg      4260
     atattctcta ttcatatatt cacacacttc ttgccacact agatcacctt cactttttac      4320
     acgattagaa tcatcaataa tcgcaaattg tcttaaagca ataactctat tttcgtgtaa      4380
     tattgcaggc tttggacccc ttttacccat tgtttgtgga tgaaacaaaa tgctcaatag      4440
     aaaatatagt acacaggaga agaaagtaaa acaattttgt ctgagtatga gctatatcat      4500
     atagcttttt cgtcattttc tgataagtag aaagataagc gcataatgta cataattctc      4560
     ccctttgtag attagatgga agagaatatg ctatgtaggt ataccgattc aaatctcatt      4620
     cttgttcaca gtgaattttt cgaatatcgc cagtgtcgcc atttattgcc aaacccgtgt      4680
     ccaatagcaa tggcaatcat agtattactt ggtatattac tatataccta tatgcgtata      4740
     ttacaacaga tatattccaa attggccaca gatctgttgc tatgtgcgga ttcaccctcg      4800
     tcatatgacg ttttgatttc tatgaaacag caacgcaacg caacgatccg acatcagaaa      4860
     cttgcataca cgcagataaa aataatttca aaacaaccag aagtctcgga aactttttta      4920
     atatctgagc taaagaagtg gccggatatt tttaataacg gtggatgact taaaggctat      4980
     gctagtcaaa tttggaagga tatacaaaca tctttaaagt taaagatgtt accaaaatca      5040
     ttattttttc cgtttataaa aacgaaaaac gcaaagatga gttgaaaagt ttttttaaag      5100
     ttcagatgac aaaaaaataa ggttactcca catgattcag attatgcaga acgtgacata      5160
     agtaatcctt ataattatga tgaattagat tttatcctag aaataccaaa acatgatgta      5220
     atagattgtt tagaaacaaa gaagaagaaa gaagagtgga cagagaaaat aagagaaaaa      5280
     attaaaattt taaaaaattt gctatgtcct tttgctttga atggtcatat aacaaaggat      5340
     aaatttaaat tttatgggcg ttgtagtgac tgtgagacag gcatatttgg aggaagcaac      5400
     aacaatgaag ataatttgag tatacgtgtg aaaacttcta ccacgtatga aattcctcat      5460
     tcaaaaaagc ttaagcagaa tggatcaaga aggcgtgaag tcaaaaaagt tctgcgtaat      5520
     caaactgcaa gtgattatcg cgaatcagaa cttggaaaaa ttgacactaa ttatgaacca      5580
     ccagatttaa atagtacagt tactttaaga aaagttaaag aagaggcact agatgagtcg      5640
     attggatata cagaattcaa aaggacgtct ataacaaaca aagtatttgt caacctttgc      5700
     aatatcagaa aattatcagt caatcctttt tacaccgtgt atttttctga ttatcaatta      5760
     caattttgga atgaaattca acataaaaaa ttacccttat catttgaatc gactggtggt      5820
     ttattaagaa aatacaagtt ctatcctggt ataacatcaa gaacaacata ctattatgta      5880
     atggttgtcg gaatagaaaa aaaattgtac cagtattaca agcaatttta tccatacacc      5940
     atgttttagt tattcaggaa atattggaaa ttccaaagga aatttcaacc gatggctctt      6000
     tagcattaca aaatgctatt tgtcaatctt ttaataaaat gacgttcaaa gaatacagtg      6060
     cacagtgctt tcaagtatta cttaatcaaa atcaggaatt accatattgc tactattgcc      6120
     atgatgtggc acatttttta aaatctattg ctgattggaa atgtatggaa caagttaatc      6180
     aaaatgttcg tgatttctat ttaagaagtg ttggatattc gactcaggtc aacaaattgg      6240
     aaaaattcaa agatgttgtg aggtctattg tagttattgc taacagtcaa ttagcagaag      6300
     agggttctga acctcataaa cacatttcaa agctgatcaa agtttttaaa acttatgaac      6360
     acgagattca aaacattgag aaaccagcat ttacagatga cgtgccgcac taatttaaca      6420
     tcattcatag acaatctttt tactaaaaca tcatcatcta acattgaaga aacgctgtct      6480
     gataaagcat atttttatta ttgcccagat tttatcaaat tatttaagaa tatatgttat      6540
     actttcccat cgtggactaa ttgtatgaaa gattattttc aataaccaaa tttagttagt      6600
     acattagcaa gatcggaaac atattttaaa tatcagaagg accgaatacc taatccaatt      6660
     ataatggaaa aatttatatt acgtgactgt aaaaaactga agtcatcagt taaagtaggc      6720
     ttcatgaaat tgaaaaatga taaaaaacaa gaaaaaaagt ggaaatttat ttgacttgaa      6780
     gctaaataat ttaattagta ctgtgctaaa taatgagtat aacaaattgt aagtcagatc      6840
     gaaactgaag gctatgctag tcaaatttga agaaggaatt gcttgcttct aaggagaaga      6900
     gttttttaag tactaaatta aagagtaata ataataataa gcagatgaaa gtaattaagt      6960
     ttttactaaa gatttgaaaa ctatattacg tatagttgaa aagaaaccag agaatcttga      7020
     gcatttgtat acaatgttca aaaaatatca cactcaaaac aatttgaggt ttggaagctt      7080
     tgtatttgat catatagatt tggtatactg tgtggcaatg agaacatttt atcatctggg      7140
     tgagccagat ttagttctta aaagcaatac tctttttacc tatcacaatg cgtggtaaag      7200
     gtttaaagat tggagcaaga acatgaaagt aacaattttc aaccaaatgt actattataa      7260
     tattagaacg aataaaagat acgacatgtt tcacattgaa ttagaaaagt gtgagaaata      7320
     tacaaactta aaacatatat tggtctagat tagtaattga ctctaatata aaaaattaca      7380
     tcaaaagccg atacttcttt caatactaat agtattatgg ataattctca cctaaaatat      7440
     gtataatgag atcataaagg cgtagcaaca aattacacag attttcttaa gcactggaag      7500
     tgtccatttg atcgccactt tttaattttt ccaaatattt attatgacaa ttgcgcttga      7560
     gcaacaatag ttgtgagcta cgaccccatc cttgtcatct ttaaataatc taagcagatt      7620
     ctattatttt ttaataacta atggagtaac tgagagataa aatgcactgc acatccagta      7680
     cttcagtctg tataaaatta ttcagtcttc ctggcacggc aattgctatt tctactcctt      7740
     tggagactgt ttgcgttttt caaagctaat tcatgcgttg atgtcattac taaaacagta      7800
     ggaccacttc attctgaacg cagagtatct tgattataaa tatgaattaa agatgattat      7860
     ttatgattat ttgttataat ttaagtttaa aaaaaaaaag atcttaccag ttccaccatt      7920
     gacaatgagg atgctataag cagttaactg attttatgaa ggttgataag tattggatcg      7980
     tttaatagag ttgaataatc caaactttga agtttgacct gaagaatttt aggttatggt      8040
     gctgattgca gagagtctac ggaagcgtct atacgccacc tacactctat acagactgcg      8100
     caaacgcgga aaatggaatg ccctacagcc cggatttggc acctaaaaga ttgaaataat      8160
     tgtgcaacaa attactcaac agttattgca aatgaggtaa aaccgcaatt attttcataa      8220
     ctcgcagtta aattgcgatc gatttgcatt gatctagtag ttatacaagt ggcacgagct      8280
     gggaaaacgg tatatctacg ttttgccgct agctaaaaag tttattattt attataaaaa      8340
     attgagagca cccgcagttt tttttttaat tgcatttact aacgttgtta acaatttcgc      8400
     aattaatgaa atttttttat tgcgatacac gcaagttatt ttcgtacttt acggtgct        8458
//
ID   Rehavkus-1_TC repbase;    DNA;    INV; 9485 BP.
XX
AC   AC154132;
XX
DT   30-APR-2006 (Rel. 11.04, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   This is a recently transposed copy of the Rehavkus-1_TC DNA
DE   transposon - a fossilized copy.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus-1_TC; Rehavkus group.
XX
NM   Rehavkus-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-9485
RA   Kapitonov V.V., Gentles A.J. and Jurka J.;
RT   "Rehavkus-1_TC, a family of Rehavkus DNA transposons from the red
RT   flour beetle genome.";
RL   Repbase Reports 6(4), 193-193 (2006).
XX
DR   EMBL/GenBank/DDBJ; AC154132; Positions   91701   82217.
XX
CC   Rehavkus-1_TC belongs to the Rehavkus group of the MuDR
CC   superfamily of "cut and paste" DNA transposons. Transposons from
CC   this group are widespread in different metazoa, including
CC   insects, sea squirts, sea urchin and fish. The beetle genome
CC   harbors several ~95% identical copies of this transposon. Its
CC   ~1340-bp inverted termini are composed of a 412-bp terminal
CC   inverted repeat and 164-bp subterminal minisatellite-like unit .
CC   Similar structure of termini characterizes all Rehavkus
CC   transposons identified so far in different species. The
CC   transposon is flanked by a 9-bp target site duplication and
CC   encodes the 1079-aa Rehavkus-1_TC transposase, whose C-terminal
CC   portion contains the Ulp1 cysteine protease.
XX
FH   Key           Location/Qualifiers
FT   CDS           2062..5292
FT                 /product="Rehavkus-1_TCp"
FT                 /translation="MPKNFDFKELADFIKSLAPNTSLTYIANLPLSDRIIH
FT                 ESSIYMFRLSKPSKRRLNDCKNRIKKILSRNEGNIKQFFHKKIVESKIISN
FT                 SPVFFDNHYTTEKNDFSINSPESTNQFSSFDNYNDFHITDFSVNDVPNSIK
FT                 NLYNQPNKSKFTLLPENSQNDISIKRLKPMSFKNCNIKEGTFSLSYEQFND
FT                 IKFNNSLINYQITVRKKFATVNNICPLNFKKHQSDKKGKKFTIYAYCAHEN
FT                 CKVFIIKLSPEKHDIIGTVFSNTLNYRHDNQKRTTFVRNFERQLLGNKLQT
FT                 STPFMTRVRDTNFVPSDQIRAGNYDNIKSKHVYKKIKSQTLSKLDRDTDEF
FT                 FDLIKMSRENRQYIYRVFEPLTVYLFSIEQLEVIKHALSQTNNGFIVLHLD
FT                 ATGSVVHSPPETKKRVYYYAGVVHIKDKELVCPVFEMITSEHDGYSIGSWL
FT                 QAFESFIVKSKQLKWSIFSYVVTDFSFAFINAITTQWNKMDDISVYLNIVY
FT                 DYITSETTVRPKITLKLCCAHFMKLITNDINKICGSNKTQKKFFKHSIAAV
FT                 FMKTSLPEVEKWFKKMVLITSKEFLDLDGKLSNVISKMFDTLNNSKDLEDI
FT                 DEETETETEDTEIPHTLYQKSKFYRHFFKICEQDKKMINSAIDSDNINIFY
FT                 NPLILDLILKKYLPILPLWSNIYPNLRDRDSIGRFSNAPVENWFCQVKNNI
FT                 LKPTGLRLRSTRFIRVVREVVLSKSKECALNIDKNQCAIIKKKRIQTKNID
FT                 LGLESEENWNKKIKSEKKKSYFEKPINEIHPSRSKFNSKVKEIKNVDFYNN
FT                 NLIRDDRYYTLGNSGVNYVVGYYSNAHPMKELYLEDFETLGNFKNFRKMWL
FT                 SNFLMDISLHVLYTKNQHKDTVRIITTHETLSIFENTCPKLTHTLEGIWLL
FT                 PLLINQNHWCFVIIDFNKKTFSFINPLKISNLNQTETYLKKFLLGIRAPRR
FT                 FSFTHWRCNIFKHPVQKNAYDCGVYVLLFAEKFIKEENPDLYSCYEPEEFR
FT                 IILRNLLLEMSDDMENRCLICGQLNLNVTTDWVECDSCKRWIMLNCLPPRL
FT                 APSNISENFTCFACQNYQNL"
XX
SQ   Sequence 9485 BP; 3320 A; 1427 C; 1447 G; 3291 T; 0 other;
     attacggtga cgatagcact ttggaaagag ctagcaccat gaaatttcca gcggaccagt        60
     caaatcacgg atgtgcgttt tcagcacttt gcgacgttgc tacgtttctc acaaattata       120
     agaaaataaa ttatttactc attttctttt aaaattcaag tgtattgtta ttaaaaaaaa       180
     taaagtaaat gcaatttcaa acttgttgta tctttgaaag caatggggga tgtagatagt       240
     ttactagttg acacaaaaag gtgaaaccgc ctaataaagg caaaacaaaa acgaggaggg       300
     catgctaccc aattatttag ggggcagatt ccacctaaat aagataatta ttcgttaatt       360
     tcttcttcaa aaacattatt tgaaaaaaaa agttaataga acgacatact aattcaaaca       420
     gagggttaga tgtcttccca aacttttaga ggattgaaat tttcaagaaa ggtaggtatt       480
     taatgggctt tcatgtggaa tgggttaaat gcgtcgacaa aaagaaatag tactagaaaa       540
     aaatatttaa tattattaat aaaatgttga catatttcaa actaagggtt ggatgtcttc       600
     ccaaactttt agagggttga aattttcagg aaaggtagag tatttaatgg gctttcatgt       660
     ggaatgggtt aaatgcgtcg acaaaaagaa atagtactaa aaaaaatatt taatattatt       720
     aataaaatgt tgacatattt caaactaagg gttagatgtc ttcttaaact tttagagggt       780
     tgaaattttc aggaaaggta gagtatttaa tgggctttca tgtggaatgg gttaaatgcg       840
     tcgacaaaaa gaaatagtac tagaaaaaaa tatttaatat tattaataaa atgttgacat       900
     atttcaaact aagggttgga tgtcttccca aacttttaga gggatgaaat tttcaggaaa       960
     ggtagagtat ttaatgggct ttcatgtgga atgggttaaa tgcgtcgaca aaaagaaata      1020
     gtactagaaa aaaatattta atattattaa taaaatgttg acatatttca aactaagggt      1080
     tggatgtctt cccaaacttt tagagggatg aaattttaag gaaaggtaga gtatttaatg      1140
     ggctttcatg tggaatgggt taaatgcgtc gacaaaaaga aatagtacta aaaaaatatt      1200
     taatattatt aataaaatgt tgacatattt caaactaagg gttggatgtc ttcccaaact      1260
     tttagaggga tgaaattttc aggaaaggta gagtatttaa tgggctttca tgtggaatgg      1320
     gttaaatgcg tcgacaaaaa tggaaagtta attttgtaag acataaaaaa gccagttgaa      1380
     gccagttttg cacttttatg tcaatcaaat tacaattcgt ccgaaattct gtatttgtaa      1440
     ttattatttt ttataataat tataatgctt atctctttct tggcagcgac cttgtgataa      1500
     gtatctgggt aataataata aaatcacaat tcgtgcattt tgataaatta taaatttttg      1560
     aagaactgct tttctcgtag gtaccttaaa acgaaaatta gtttattgaa gtcgtgttaa      1620
     tgagccgatt tttacgagat aaaaaggtaa aaagggtata ccgattattt ggaaaacatt      1680
     ttattggtct acttagaatc atcccggctt cccggctacg cggtattttc ttagaattta      1740
     gagtaatcgt ctgctacctt atctctgtct gctataacga gttataccga ttctcgattc      1800
     atctgaattt gcagttattg catggctttg gtgatagcag gtgtattttg ctgagctttt      1860
     gcgcgaatta attttgtaag aacctttttg cttttcggaa tcttttcttt tgtttttagt      1920
     ttattggttt tgttttcagc atttatagtc gttagtttta gaatttttag attttttagt      1980
     ttttgaattt ttgggttttt ttagttttag aatttttagt ttttagtttt ttattattat      2040
     ttttgttgtc tactttaaaa aatgcccaag aattttgatt tcaaggaatt agccgatttt      2100
     atcaaaagtt tggctcctaa tacatcactt acatacatcg caaatctacc tttaagtgat      2160
     cggattattc atgaatcttc tatttacatg ttccgccttt ctaaacctag caaacgaagg      2220
     ttaaacgatt gtaaaaatcg tattaagaaa attttgtcgc ggaacgaagg aaacataaaa      2280
     cagtttttcc ataaaaaaat cgtcgaatcc aaaatcattt ctaatagtcc cgtttttttt      2340
     gataatcatt acactactga aaaaaatgat ttttcaatta actcaccaga atccaccaat      2400
     cagttttctt ctttcgataa ttacaatgat ttccatatta ccgatttttc agtgaatgac      2460
     gttccaaatt caataaaaaa tttatataac caacctaata aatcaaaatt tactcttttg      2520
     ccagaaaatt cacaaaatga tatatcaata aaacgtttaa aaccaatgtc ttttaaaaat      2580
     tgtaatatta aagaaggcac tttttcacta agttatgaac aatttaatga cattaaattt      2640
     aataattctt taattaacta tcaaattact gtgaggaaga aatttgcaac agttaataat      2700
     atttgtcctc ttaattttaa aaaacaccaa tcagacaaga aaggaaaaaa atttacaatt      2760
     tatgcatatt gtgcacatga aaattgtaaa gtgtttatca ttaaattgtc gccagaaaaa      2820
     catgatatta ttggaaccgt ttttagtaat acactaaatt atcggcacga taaccaaaaa      2880
     aggacaactt ttgtgagaaa ttttgaaaga cagctattag gaaataaatt gcagacatcg      2940
     actccattca tgacacgagt tcgggataca aattttgttc cctcggatca aattcgcgca      3000
     ggaaattatg ataatataaa atccaaacat gtgtacaaaa aaatcaagtc acagactctt      3060
     tctaaattag atagagatac agacgaattt ttcgatctta taaaaatgtc gagagaaaac      3120
     cgccagtata tttatcgcgt ttttgagccc ctaacagtgt atttatttag tattgaacag      3180
     ttagaagtta ttaaacatgc actgtctcaa acaaataatg ggtttatagt tttacattta      3240
     gatgcaaccg gaagtgtcgt ccattctccc cctgagacga aaaaacgtgt ttattattac      3300
     gctggagtgg tacacatcaa agataaagaa cttgtttgtc ctgttttcga aatgataact      3360
     tccgaacatg atggttattc tattggttca tggttacagg cttttgaatc atttattgtt      3420
     aaaagtaaac agctaaaatg gtccattttt tcttatgtgg ttaccgattt tagtttcgct      3480
     tttattaacg ccatcaccac acagtggaat aaaatggatg atattagtgt atacttaaat      3540
     attgtatacg attatataac atcagaaacg actgttcgac caaaaatcac tttaaaatta      3600
     tgttgcgctc attttatgaa attaataaca aatgacatta acaagatttg cggtagcaat      3660
     aaaactcaaa aaaaattttt caaacattct atagcagctg tttttatgaa aacatcttta      3720
     cctgaagtgg agaagtggtt caaaaagatg gttttaatta cttcaaaaga atttttagat      3780
     ctcgatggga aattaagcaa tgtaataagc aaaatgtttg atacattaaa taatagtaaa      3840
     gatctagaag acatagatga ggaaactgaa accgaaactg aggacaccga aattccccat      3900
     acactttatc aaaaaagcaa gttttataga cattttttca aaatatgtga acaagataag      3960
     aaaatgatta atagtgcaat agattcagat aatatcaata tattctacaa tcctctgatt      4020
     ttagatctca ttttaaaaaa atatttacca attttacctc tttggtcaaa tatttatcca      4080
     aatttacgtg atcgtgatag tattggaaga tttagcaatg cgcctgtgga aaattggttt      4140
     tgtcaggtga aaaataatat tttgaagcca actggactaa gacttcgaag tactagattt      4200
     attcgagtag ttcgagaagt tgtcttgagt aaatcaaaag aatgtgcact taatatagat      4260
     aaaaatcaat gtgctatcat aaagaaaaag cggatacaaa caaaaaatat tgatttagga      4320
     ttagaatcag aagaaaactg gaacaaaaaa attaaatccg aaaagaaaaa gtcatatttt      4380
     gaaaaaccaa ttaacgaaat tcatccttcc cgttcaaaat tcaattccaa agtaaaagaa      4440
     attaaaaacg tagattttta taataacaat ttaattcgag atgacaggta ttatacattg      4500
     ggaaactcag gcgtcaatta cgttgtagga tattattcta atgctcatcc aatgaaagaa      4560
     ctttaccttg aagatttcga gactttggga aattttaaaa attttagaaa aatgtggcta      4620
     tcaaattttc ttatggacat aagtcttcat gttttatata caaaaaatca acataaagac      4680
     actgttcgta tcatcacaac gcatgaaaca ttatcaattt ttgaaaacac ttgtccaaaa      4740
     cttactcaca cactagaagg aatttggttg ttgcctttgt taataaatca aaaccattgg      4800
     tgctttgtga taatagactt taataaaaaa acatttagtt tcattaaccc actcaaaata      4860
     agcaacctta atcaaactga aacatactta aaaaaatttt tattaggaat tagagcacca      4920
     aggcgatttt cttttacgca ttggagatgt aatattttta aacatcctgt tcaaaaaaat      4980
     gcttacgact gcggtgttta tgttttatta tttgcagaaa aatttataaa agaggaaaat      5040
     ccagatttgt attcgtgtta tgaaccagaa gaatttcgaa tcattttaag aaatttgtta      5100
     ttagaaatgt cagatgatat ggaaaataga tgtttgattt gtgggcaatt aaatttaaat      5160
     gtgacaacag attgggtaga gtgcgactcc tgtaagcgct ggatcatgct aaactgtcta      5220
     cctccaagat tagctccttc taatatttct gaaaatttta catgttttgc ctgtcaaaat      5280
     tatcagaacc tgtagtttat ttctttattc tttattcttt gtaccatatg attcaatacg      5340
     ggtgattcaa aagtgtcgta caatctgtta aaggacatct gtcaaaggtc aaaggacatc      5400
     aaactgaatt gaaggttcct atggcaaaaa attctattag cctattttca caagataatg      5460
     ttctttaaag ttaaattttt cttttaattt tttggtgttt cagatcatgt tttttgactt      5520
     tagttagtac aaacgacacc tctggcaaca gatacctgtt gaaaaaaaaa cactagttaa      5580
     tgtcttatga tgtacgaaac aattaaaaaa cttgcaaatt cgacaataaa ttaaactcaa      5640
     cgtcataaga aacaaaagtc gataccgttg ctaaggaaaa caaattaaaa aattttaatt      5700
     aaaaattaag ttgcttgaaa aaaaagtgac ttcattttta tgcttaattg aacatctttt      5760
     atcagtttat caccattcga gagtgtgtct gcacttttga atcaccctgt cttataccta      5820
     atttttaata agtggtggct atgaaaacaa aaattatgac aacgtgggtg taatttcaat      5880
     ttttggtcta ataaattgta tgagatttgt cattaattca caaaaagtgg cgctgagctt      5940
     gttttacact gatttgaaat atgtactttc tgtttcaaaa ctatagaaat atagaactaa      6000
     aaaatacatt ttatcaacct tattaaaaaa aatcggtaaa atgcgatgtt agcattttcg      6060
     taattttgca acagggagtt atcattgaat gccactaagg gttagttgca taattaaaca      6120
     acactgtccc cggtcattcc ttggaagggt gactggataa tgtcatgcca aaaacatcgc      6180
     aactaactcg tcttttgaag aagacgcggt cccgttcact attagtggcc gttaggtctg      6240
     gtcagaggct gtcgatgcga cctgaaaact ctgacacttg ggtgatgaca ttaccaccat      6300
     acccatattt atttatttat ttttaccaca gagaggcaaa aatgaaaaaa acagacaaaa      6360
     ggaaaatagt tcgtactgaa aaaattatta aaactgtgtg acaagtagta gagaaaacac      6420
     tgacttgttt acctataccg gtgggacacg gggggacaaa ccttattgcc aaaatggcaa      6480
     cgttgcaggt tcataatttg aggtgaacta catcacaaaa gcatgatttt tgtgtataac      6540
     aagaatctgt gatacaactg aacactactt acaaaatttg agtgtaaagc cttcattatt      6600
     tcataatttt catacagaac aaatgttaaa agtgttagct agaagctaag ctataaagtt      6660
     ttaaaacttt tgttttctat tgccactgtt tattagaaat taaatctatc atacggtatt      6720
     actccgcttt tattgttgaa gcacagtaat ttttagttta tctaggcttg ggcattagtg      6780
     catgttgcat aggtaacagt ggcgttcgtt cttatttatt agataaaatc caagattttt      6840
     aaaatttcca gatagtaaaa ctggggacga gcaaaatgga gattatgtat ttgttttagt      6900
     aattttaatt ttggaaattt tagaaatact acacaatttt ttagttattt gttcggtgct      6960
     tgcatgatat ggcttatatt tttttaaata agaattaatt ttaagtttcc tctctcagaa      7020
     ttagtgcctt gtcgcggcga gagagcttac cgagtaatat ttattaaaga cattccataa      7080
     ataaggtaac taatattact taaatattaa ttaattttta gtattttctt actgtgtaaa      7140
     tattactcga acaaaactaa ttaaggttcc tttacaaaaa agtactaact ctctgcgttt      7200
     gacagaaaag aacgtttgaa agtaatcaat cacggaaggc cttgttccaa aaataggtag      7260
     aacgaataac aaaagtgtgg actcgaatta tttttcgttc tttgtaacat gcctgcctat      7320
     acctggaagc gagcttctgg gattggtcag tttgaaacct ctgtatcact taaatgaaaa      7380
     ataaatggcc tacttttttt gaatttttat catctctatt gcttttctac cagcacattt      7440
     ccgctgggaa gtgagttctg gaccacgctg tataaattac ttttaaatta cctattaaag      7500
     atagctttgt tgcataaatt tatcacatta ttttgtgaaa taaatattaa gcttttccaa      7560
     agatgaattc agcagctcta gaaaggtgta acaatttgtc taataatttt tgttttaagg      7620
     tatctacgag ataaatgttt tccaaataat cggtaaacca tttttacctt tttatctcgt      7680
     aaagatgggc tcattaacac gactttaata aactaatttt cgttttaagg tacctacgag      7740
     aaaaacagtt cttcaaaaat ttataattta tcaaaatgca cgaattgtga ttttattatt      7800
     attacccaga tacttatcac aagatcgctg ccaagaaaga gaaaatttca accctgtaaa      7860
     agtttgggaa gacatccaac ccttagtttg aaatatgtca acattttatt aataatatta      7920
     aatatttttt tctagtacta tttctttttg tcgacgcatt taacccattc cacatgaaag      7980
     cccattaaat actctacctt tcctgaaaat ttcaaccttc taaaagtttg ggaagacatc      8040
     caacccttag tttgaaatat gtcaacattt tattaataat attaaatatt ttttttagta      8100
     ctatttcttt ttgtcgacgc atttaaccca ttccacatga aagcccatta aatactctac      8160
     ctttcctgaa aatttcaacc ctctaaaagt ttgggaagac atccatccct tagtttgaaa      8220
     tatgtcaacc ttttattaat aatattaaat atttttttag tactatttct ttttgtcgac      8280
     gcatttaacc cattccacat gaaagcccat taaatactct acctttcctg aaaatttcat      8340
     ccctctaaaa gtttgggaag acatccatcc cttagtttga aatatgtcaa ccttttatta      8400
     ataatattaa atattttttt tagtactatt tctttttgtc gacgcattta acccattcca      8460
     catgaaagcc cattaaatac tctacctttc ctgaaaattt catccctcta aaagtttggg      8520
     aagacatcca tcccttagtt tgaaatatgt caacctttta ttaataatat taaatatttt      8580
     ttttagtact attttttttg tcgacgcatt taacccattc cacatgaaag cccattaaat      8640
     actctacctt tcctgaaaat ttcatccctc taaaagtttg ggaagacatc caacccttag      8700
     tttgaaatat gtcaacattt tattaataat attaaatatt tttttctagt actatttctt      8760
     tttgtcgacg catttaaccc attccacatg aaaacccatt aaatactcta cctttcctga      8820
     aaatttcatc cctctaaaag tttgggaaga catccatccc ttagtttgaa atatgtcaac      8880
     cttttattaa taatattaaa tatttttttt agtactattt tttttgtcga cgcatttaac      8940
     ccattccaca tgaaagccca ttaaatactc tacctttcct gaaaatttca tccctctaaa      9000
     agtttgggaa gacatccaac ccttagtttg aaatatgtca acattttatt aataatatta      9060
     aatatttttt tctagtacta tttctttttg tcgacgcatt taacccattc cacatgaaag      9120
     cccattaaat actctacctt tcttgaaaat ttcaaccctc taaaagtttg ggaagacatc      9180
     taaccctctg tttgaattag tatgtcgttc tattaacttt ttttttcaaa taatgttttt      9240
     gaagaagaaa ttaacgaata attatcttat ttacaagata caagtttgaa attgcattta      9300
     ctttattttt tttaataaca atacacttga attttaaaag aaaatgagta aataatttat      9360
     tttcttataa tttgtgagaa acgtggcaac gtcgcaaagt gctgaaaacg cacatccgtg      9420
     atttgactgg tccgctggaa atttcatggt gctagctctt tccaaagtgc tatcgtcacc      9480
     gtaat                                                                  9485
//
ID   Rehavkus-2_NVi repbase;    DNA;    INV; 9132 BP.
XX
AC   AAZX01004877.1;
XX
DT   14-MAY-2009 (Rel. 14.06, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 3)
XX
DE   Rehavkus DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus group; FB; FB4; NOF; Rehavkus-2_NVi.
XX
NM   Rehavkus-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-9132
RA   Bao W. and Jurka J.;
RT   "Rehavkus DNA transposons from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1159-1159 (2009).
XX
DR   [1] (Consensus)
XX
CC   TIR is 400-bp long, TSD is 9-bp.
XX
FH   Key           Location/Qualifiers
FT   CDS           4761..8564
FT                 /product="Rehavkus-2_NVi_1p"
FT                 /translation="MVGQKPAVPAKEIIEALINFDIYQSKKKLKRKKDPIW
FT                 QEICDILNNNRERKIKPLNLYMHVDQDRHNIQSSYRKIKDLDIYESDDCET
FT                 IIEETNEDEISESENTKEDTVCYRPTKRKNKNIIFNFTITPEQWSQIKPIT
FT                 ITYKDGREGMSLQEPYREMFGKEMYYKEKLPCAYNYKRNVIDDIESYVKVT
FT                 GYCNTCNAQLMINCFDKPIDGEPVTFTVETLDSRGIPHTAKRRLAGSQRKL
FT                 IKKELEHKKPKKWRREEASKHMKYGDPEPPFLYSQEVIQKASHEVKYEKLG
FT                 LKPGEKLFDSLTNLKKDVEFNRYFRGIGNDKFYLMYWSPEQVSIHNDVQAK
FT                 LRNPLSLDATGSVALKIKRPDGESADIFLTVLSTYIKSMIVPVAQVLSEKN
FT                 DTNFLSYWLLEWRKSGAKIPEFIVTDMGKGIQNSVCLSFNTMNFSKYNDEC
FT                 LKILLNAQYKIELNTQLRTDVAHLVHAVTKWPCFSSDKPKVKELFKRCVGF
FT                 MTGIDNLKNFSEFLVAVFIVSNSKNNDDNCQKALKYLIERIQTYKFNANVT
FT                 EKLELLDQKETLDIFADIEEFNTKSNQRLTRKYVDELKVKPIKNKSDNKSD
FT                 NSSDFNIQNNDYYLPNFAERLSILCAEFPCWTKVMNVYFDNSEDVATSARA
FT                 ESYFSDYKSSNDASQRGDVVFVNHCRQIDSDMLLARASLNNLQPDEIVSKK
FT                 VIVKDDNEFLFATERWKRKYTTAECQEFSDFLSETVELAENSISETINGKN
FT                 DLILDKNKLEQEQKSHIKNSMKVNDESQVTFDDDLEGFSDYIKLTSSIVGD
FT                 EKLISSIHSPEKINSILQPINSNKTMHLNFNTDHNYSLEPEKESPKQIFQN
FT                 TDEVLLIDHQQSESERVLLDYKKTEEVVLDYEQSDEEVDLKHSKETLLNKE
FT                 KYSSYEVKDVDVKSSVNTVQNSVQLVVKNEQDQNSLPKNKKNRGKYVSAEP
FT                 GLNLVLQKEKKKNKGRKVIQNGNKLQEKSVRGKKFRFNNTCSFDSITEIMT
FT                 HSCYEVQAFEQFIKNNINSILEMQNLCYASTIINYATSSLTNTLYTNRAYL
FT                 LHSLMPNLNNYDVNCQGNISNLFCSLMKDLTSIRETSLCQTCGYKTECNKC
FT                 QIPIPNTDIIVKHNYTTMQKELDQYFTDKNVFCSNCKTSNAHLSRTVGSYL
FT                 CIDTEDSYQRSLNPKMTDFNQLDITSTLDQVPVTINVKKDTFNLCGVARYI
FT                 PSVVEKGMGHYVAYCRKINGTWDERNDLLTYKTAITRSQTKRLEMKISILF
FT                 YVKFNND"
XX
SQ   Sequence 9132 BP; 3378 A; 1376 C; 1490 G; 2888 T; 0 other;
     acccccctta ccccagcccg caaatattga atatatataa taaaaaaaat actagtcgat        60
     gtatttttaa ttgcacatta caaataatct atttattgta attgaacctc cgtagttttt       120
     taattaaaaa taaaaaaaga aatgtgctat atgtaccttg gaaaaatacg tttttctcaa       180
     gaaatattgt gtttaccgat attctatcaa cgttaaaaaa ttgaacccta gctatttgta       240
     attgagacac tgctaaatat tgcaaaaaaa gcataaaaaa atctaaaaaa tcacttttga       300
     gaaatttaac atacagcacc aacgtattgc gcatgcgcaa accactccga gtgcgtcagc       360
     ggtcagcgtg tggcaggcaa agcgagcagc tgttctgcag tggagaaaat acttagtgct       420
     gctggctgca ctttgtgctg ctgctgatga tgtcgcatct gaaagcagta tgcagcgatc       480
     caggggttgt gccattgccg caatcaagga tggacttttc ggatattcat acaggaagtt       540
     ctggtggaga tgattgtgat gagaaatgac tggactgtgt gcactaggtg tgagacttac       600
     agaccaccta gggcacatca ttgtaggatt tgtaaaaggt gcattaggag aatggatcat       660
     caaactttct cctgatattc ttttctgtgt ccatattttg gaaaaactgt gctacttact       720
     cgcacttgtt ggcaataaag cagatatgat tcatctgagg cggaggaagg tgaaattatg       780
     aataaaatgt tataattctt gatgcaagga aaaaagaact attgtatgct tgtgaacaca       840
     tgtaaacaaa cttgattata tattatactt atttgttttg aaatatataa atattctaaa       900
     atatgaacaa ctttgagttt atttttacta attttggtaa ggaataggct tgaatcagta       960
     cattaaaaat gacaaggagg tagaatttga aaatccattt attcgcctcc agactatttg      1020
     tgtaatatac cttgacagca atgtctgctt gttttcacat tatcaatata tttggcttac      1080
     gaactaagtt tctcttaatg tacaaacaac tatattattt aaaaaattaa tacgtggatt      1140
     taattggcgt aaaaagtttg cccttattat gtattgtgca aaaaaagtgt ggattcttct      1200
     tgcgtataca aaaattttaa atactcataa agcggagaac tgtggaagaa taaactggag      1260
     cgcaaatctt agtccaacga gattctcgtt tcctcaatca accctcattc gcaaatcaaa      1320
     tggatgcccg tcgtatttta agaaaaaatt ttataatttc gaaatctttt ataaattctt      1380
     ctattgttat taatattatt atattatcat tgctctttca aatgcgaagt taaaaaaaaa      1440
     cattttgtca cttttatgag tgcattaata cacatctggg gaaaatatga ttatgaaata      1500
     attttttgta gctcaaggta tatatttact tatcataata aagctaaatt atttttttac      1560
     ataaaaaaaa cttaaaatat attattaaat ctacagacat aaagcatgat aaaccacttt      1620
     ttgtgaagtg attgtacatt atgactgtaa atagccaaga accttaagta ttcagttgat      1680
     ataaatataa gcttatagag tctttataac taatattttt gttgcaatgc ctcatattat      1740
     tcagatatgt attattgcat gataaaagtt acagtgttca aaaccaaacc gcgccgcaag      1800
     aaaaaaaaac tcgacaaaag tgatatagag aaagagagac acgcatgaca gaatatctaa      1860
     gctaggcatt caaaatttcg aaagtttaat ttccaaatga ttaaacggta taattcttaa      1920
     acggttctct tctcttagaa ataaaaatga aatagaacag aacccacaat ccacgacgca      1980
     cttctttttt taatattacc gatgtctttt ttcagtctac tgatcttttc atcgggtgag      2040
     aggatcggcg ctgccgagaa gatctgcatg tacgactgta gaaatccata aaaatattct      2100
     ggaaacactt tgcctcgtgc ctgtgacaaa tacaattcag cgctcttgcg attcgacgga      2160
     tttttctcga tcatcgaggc caagatttct cgaatgcctt cgtcttctat attatcaagg      2220
     tgcttgcttg cagagtagtc gccgtttcta taagctgtaa atgaaaattc ctaaaatcga      2280
     atcaaaattt taaatggaaa aaaaaattaa aaatctattt acctaaaagt tgagagaaat      2340
     cgaaaggcgg gtggccttca ttgtacaatt cagtcaaagc acaaccggcc gaaaaaatat      2400
     ccatcatggg atgcaaatct cctgttttaa gttcttgaaa gagcagggta ttgttgggtt      2460
     ctgaagtcaa cgttttaaca aatctctctg gtgcaatgta gcatgttcta aaaagaaaat      2520
     cgaataagta aacattctct tctcttagaa ataaaaatga aatagaacag aacccacaat      2580
     ccacgacgca cttctttttt tacttttatt aaaattgagt gtcccctcct ctggagagaa      2640
     tcttcacaac acgcacacgc aggccgagca tctcatcact tcttggcgag ctcgttgctg      2700
     agccagtcga aaccttcgta caatccgtga ccctgagtgg cgcaggcact ctttatgtac      2760
     caggagtcag cataccactg attgtaagac ccatcttgta atgtcgtatc tatcgctgaa      2820
     attaaaattt gatattacta tttaatacta gtgttaatac acatttgttg gaattgtgta      2880
     tcttaaatat agtttttatt tttagttttt gtttaattat aattcttgtt caactttgaa      2940
     atatactttt acaaaaatgt atacagcaac taccctgcca taatagcatt agatcattaa      3000
     agtttaaaga agtgatttga gcaaatgaat gtattcctac tagatcaaat gatttaatgt      3060
     tcaagttttt acagtatatt agttgtatac atttttaaat agataaccca tgcatggaaa      3120
     aattattatg aatgatgcaa ctgcttatat ttaatccagt actttaatac aagtacataa      3180
     agcatgaata cattgataaa aattattaat acagcacgga ggaaggtgaa attttggcca      3240
     aagacttcga atgctggttc agcaaagtta tggctgccga acaggtacgt tttcctttaa      3300
     tgtgaattag caatgagcct tatttagttt ttacaaaggt tgaaaacaaa tttcatttaa      3360
     acgtactttt aggtggctca agtagcagaa tcctttcatg agctatgtcg agaagtgtgg      3420
     caagacaaag gaataagcaa tctctgctcg acagaatgct cggtagtaaa tcaacgaaag      3480
     tttattccag aggaaaaagc gactcagcgt tgccaaaaga ttgataagat gatattttta      3540
     caatgaacga aactcaagct ttttaaatac ctgtggaact agatgaatgt tgagccttgt      3600
     catatacaat ctctattttt tgtatttaca acaaaggatt gagctaatga aagccttttt      3660
     ccgtttatta aagtttctta aaaataaatg ttcatgattt ttagtattac cttaatctta      3720
     gaaaactgtg agccttatca ttatgatcgc agactacttg ttatcaatat gaaatactgt      3780
     tatatgtatt ctcatcaact aataaattat tttcacacac acaacaaagt aattccaaat      3840
     aatgattgtt ttcccagtct attccttgtc ttcgcttata aatattatcc atctctagtc      3900
     ttgtagttca ggcaaatctt gtagttctgc aaaaaaaaat aataataaca ttcaattaat      3960
     tgtaatcttt aagtaactaa aacctaaaat tttcaaaatt tagtgatttt atgtttacaa      4020
     ttttacttgt tacaaaaagt tcaaagtaaa acgcttaagc cttcatatat aatatcttta      4080
     atatttattt aattataaac aaaacatcat tgataaccaa tcgcgccaga acatccatcc      4140
     aagttttgaa aacataataa cagctgatga gctttttcac gattatacgt caatgtaatt      4200
     ataaccgtaa tatgaccgta actgacactt atgaaaatta attaaatcat gaataaatga      4260
     ttgtagttct taaagtaatg ttgaaaataa tatatattta taatttataa ttaagaaata      4320
     attatatgaa tcttatatta tgaatgatat taatatccct aatgaacaaa atttgtacag      4380
     cccgcgataa tttatggcgg caagtaaatt ttcgaacaaa ggactgtcgt catttgttta      4440
     ctatttatat tctaaatatt ctcttttcag tgatcaaaaa agtataggaa cagaaaacag      4500
     ttcatatact gttctaagta aatttagtta cgtgtggata tttggattat ttgactgtta      4560
     attaatcact ttgtcaatgg aataaaaaac aaaaagtata ataataaata tctgctaact      4620
     atattatctt ggaaaaggtg aaattgataa gttaaaacaa tgaaaaaaga ttattttatt      4680
     ccttaattaa aaattcttaa atcaaaataa ctattttttg ataaaaaaac atttcaaata      4740
     ttttagattt ctataaaata atggttggac aaaaaccagc agttccagct aaagaaataa      4800
     ttgaagcgct tatcaacttt gatatatatc aatcaaaaaa gaagcttaaa agaaagaaag      4860
     acccaatttg gcaagagata tgcgatatct tgaacaataa cagagaaaga aaaataaaac      4920
     ctcttaattt gtacatgcat gtagatcaag atagacataa cattcagtct tcctatcgaa      4980
     agataaaaga tttagatata tatgaatctg atgactgtga aacaattata gaagaaacta      5040
     atgaagatga aatttcagaa agtgagaaca cgaaggaaga cacagtctgc tatagaccaa      5100
     ccaaaagaaa gaataaaaat ataatattta attttacaat aactccagag caatggtctc      5160
     aaataaagcc tattacaata acttataaag atggaagaga aggtatgtcc ttgcaagagc      5220
     cttacaggga gatgtttggg aaagaaatgt attataagga aaaattaccc tgtgcttaca      5280
     attataaacg gaatgttata gatgacatag aatcttatgt caaagtcact ggttattgca      5340
     atacttgcaa cgcacagtta atgattaact gttttgataa accgattgat ggtgaaccag      5400
     tcacattcac tgtagaaact ttagattctc gtggaatacc tcatacagca aaaagacgac      5460
     tagctggatc acagagaaaa ttaattaaga aagaattaga gcataaaaaa ccaaaaaaat      5520
     ggagaagaga agaagcaagt aagcatatga agtatgggga tcctgaacca ccgtttcttt      5580
     acagtcaaga agtaatacaa aaagctagtc atgaggtaaa atatgaaaag ttaggattga      5640
     aaccaggaga aaagttgttt gactctttga caaatttaaa aaaagatgtt gaatttaata      5700
     gatattttag agggattggt aatgataaat tttacttgat gtattggtca cccgaacaag      5760
     taagtatcca taatgatgtc caagccaaac taagaaatcc tctatcgcta gatgctacag      5820
     gttctgttgc cttgaaaata aaaagaccag atggagagag tgctgacatt tttcttactg      5880
     ttctgtcaac atatataaaa agtatgattg tgcccgtagc acaagtattg tcagagaaaa      5940
     atgacacaaa cttcttgtct tattggcttt tggagtggag aaaatctggt gccaagattc      6000
     cagaatttat tgtgacagac atgggaaaag gcattcaaaa ctctgtttgc ttgtctttta      6060
     atacaatgaa tttttctaaa tataatgatg aatgccttaa gattttatta aatgcacaat      6120
     ataaaattga gttgaatact caattgagaa cagatgtggc acacttggtg cacgctgtaa      6180
     cgaaatggcc ttgttttagc agcgataaac caaaagttaa ggaattgttc aagcgatgtg      6240
     tgggctttat gacaggcata gataatctga agaacttttc agagttttta gttgctgtat      6300
     ttatagtgtc taacagcaaa aataatgatg acaattgcca aaaagctttg aaatatctga      6360
     ttgaacgaat tcaaacatat aaatttaatg cgaatgttac agaaaaatta gaacttttgg      6420
     atcaaaaaga aactttagat atttttgcgg atattgaaga attcaataca aaaagtaatc      6480
     aaaggcttac acgtaaatat gtagacgaat taaaagtaaa gcctataaaa aacaaatctg      6540
     acaacaaatc tgataattct tctgatttca atattcaaaa taatgactat tacttaccta      6600
     actttgctga acgattatcg attttatgtg cagaatttcc atgctggact aaagttatga      6660
     atgtctattt tgataactca gaagacgtgg ctacttcagc aagagcagag tcatatttta      6720
     gcgactacaa atcttcgaat gatgcttctc aaagaggaga tgtagttttt gtgaatcatt      6780
     gtcgtcaaat tgatagtgac atgctcttgg cacgtgcttc attgaacaat ttgcagccag      6840
     atgaaattgt ttcaaaaaaa gtaattgtta aggacgacaa tgaatttctt tttgccacag      6900
     agagatggaa aagaaagtac acaactgctg agtgccaaga attttctgac tttctttctg      6960
     aaactgttga gttggctgaa aatagtattt cagaaaccat taatggaaag aatgatttaa      7020
     ttttagataa aaataagctt gaacaagaac aaaaatctca cattaaaaac tcaatgaaag      7080
     tgaatgatga aagccaagtg acctttgacg atgatttgga agggttttct gattacataa      7140
     agttgacctc ctcaatagtt ggcgatgaaa aattaatcag tagcatccat tcacctgaaa      7200
     aaataaattc aatattacaa ccaattaaca gtaataaaac tatgcatctt aattttaata      7260
     ccgatcataa ttatagctta gaaccagaaa aagaatcacc taagcaaatt tttcaaaata      7320
     ctgatgaagt tttattaata gatcatcaac aatctgaatc tgaaagagta ttattagatt      7380
     ataaaaaaac cgaagaagta gtattagatt atgaacaatc tgacgaagaa gtagatttga      7440
     aacattccaa agaaacattg ttgaataaag aaaagtattc cagttacgaa gtaaaagatg      7500
     tagatgtaaa aagctctgtg aatacagttc agaactcagt acaattagta gtaaaaaatg      7560
     aacaagatca aaatagtctt cctaaaaata aaaagaaccg tggcaaatac gtatctgctg      7620
     agcctggatt aaatctagtg ctacaaaaag aaaaaaagaa aaataaaggc agaaaagtta      7680
     ttcaaaatgg caacaaactc caggaaaagt ctgtgcgtgg aaaaaagttt agatttaata      7740
     atacttgttc gtttgatagc atcactgaaa tcatgactca ttcttgctat gaagtacaag      7800
     cttttgaaca atttatcaaa aataatatta acagtatact cgaaatgcaa aatttatgtt      7860
     atgcaagtac tattataaac tatgctacat catcattaac caatacatta tatacaaatc      7920
     gagcatactt acttcattca ttgatgccaa atttgaataa ttatgatgta aattgtcaag      7980
     gtaatataag caatttattc tgcagtttga tgaaagattt aacttccatt cgagaaactt      8040
     cactatgcca aacctgtgga tataaaacag aatgcaataa atgtcaaata ccaatcccca      8100
     atactgatat aatagtaaag cataattata cgactatgca aaaggaatta gatcaatatt      8160
     tcacagacaa aaatgtattt tgttcgaatt gtaagaccag taatgcacat ctttcacgta      8220
     cagtaggttc ttacttatgc atagatacag aagattctta tcagcgatct ctaaatccaa      8280
     agatgactga tttcaatcag ttagatatta catctacatt agatcaagtt cctgttacaa      8340
     taaatgtaaa aaaagatacc tttaatctgt gtggcgtagc taggtatatt ccttcagttg      8400
     ttgagaaagg gatgggccat tatgttgctt attgccggaa gataaatggt acctgggatg      8460
     aaagaaatga tctattaaca tataaaactg ctattacaag atctcaaacc aaacgtttgg      8520
     aaatgaaaat aagcatctta ttttatgtaa aatttaataa tgattaataa attatataaa      8580
     cataaattag aataaaaatc gtataatact tacataatca aattttgtta cgaaattacc      8640
     tatgaactac gagcttacgg ccctactata cgactccgag cattagactt ttctataggt      8700
     tatgtctcac acctagtcca gccactgcag aacagctgct cgctttgcct gccacacgct      8760
     gaccgctgac gcactcggag tggtttgcgc atgcgcaata cgttggtgct gtatgttaaa      8820
     tttctcaaaa gtgatttttt agattttttt ataaataaat gctttttttg caatatttag      8880
     cagtgtctca attacaaata gctagggttc aattttttaa cgttgataga atatcggtaa      8940
     acacaatatt tcttgagaaa aacgtatttt tccaaggtac atatagcaca tttctttttt      9000
     tatttttaat taaaaaacta cggaggttca attacaataa atagattatt tgtaatgtgc      9060
     aattaaaaat acatcgacta gtattttttt tattatatat attcaatatt tgcgggctgg      9120
     ggtaaggggg gt                                                          9132
//
ID   Rehavkus-2_TC repbase;    DNA;    INV; 2740 BP.
XX
AC   .
XX
DT   30-APR-2006 (Rel. 11.04, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   This is a recently transposed Rehavkus-2_TC DNA transposon - a
DE   consensus sequence.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus-2_TC; Rehavkus group.
XX
NM   Rehavkus-2_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-2740
RA   Kapitonov V.V., Gentles A.J. and Jurka J.;
RT   "Rehavkus-2_TC, a family of Rehavkus DNA transposons from the red
RT   flour beetle genome.";
RL   Repbase Reports 6(4), 195-195 (2006).
XX
DR   [1] (Consensus)
XX
CC   Rehavkus-2_TC belongs to the Rehavkus group of MuDR "cut and
CC   paste" DNA transposons. Transposons from this group are
CC   widespread in different metazoa, including insects, sea squirts,
CC   sea urchin and fish. The beetle genome harbors several ~95%
CC   identical copies of Rehavkus-2_TC. Its 580-bp inverted termini
CC   are composed of a 139-bp terminal inverted repeat and 148-bp
CC   subterminal minisatellite-like unit. The transposon is flanked by
CC   9-bp target site duplications and encodes an incomplete 439-aa
CC   Rehavkus-2_TC transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           657..1973
FT                 /product="Rehavkus-2_TCp"
FT                 /translation="TKTFSKILAKAILQIKRAGKTTVTFNSKFIRLRKVLK
FT                 IYIETLEGAIPLVNSKNKDSMLVWKGEENIFPKYTNKNEDKLYSAVPKEAD
FT                 DPLSLLEKTHKNSKEVETTNDDNDETMKDEEDRAVENWKGEGATKPKRPRR
FT                 SYLENQKEWEFMELSARTKTIPISLIKNGNCSTLRTITINKKKFMFTNTCG
FT                 FDALVQILSSCYCDCPAFREGVVDDNFLAELLQNLVKGKISRHSYILRAKI
FT                 LSQIFDEVLRPDGLIEIPCVCTQQLLIDRLATNNFLEWSKKEITVCSKCGY
FT                 NETRNYATIMLSDNNLVAELVTKTMEKTCFCPKCDEKYLNVKSNLNENYIF
FT                 IDWASVSLTNTNRSVQLCQIPANIALTHKNLNYKLQGVVEIIGEGILASDV
FT                 GHFIAYCKRPNEKWEIYDDLQDKVNTNCPPEKVLRGCALLVYRCL"
XX
SQ   Sequence 2740 BP; 973 A; 437 C; 481 G; 849 T; 0 other;
     acgtgcgtta agttggccca accactttca aactttgaaa atgcacatac ggcattcaaa        60
     tgtgctcgga aagtgctgaa gaatgctgct atttatttaa aaaatgctac tttagtttta       120
     tagatttttt gtgttttttt ggttgggcta acttaacggt ggcccaacca ttttatgtgc       180
     tggacgtttt gtttatgcca tttaaaagtc ctttaaaaat gctggcaaat gccgtatttt       240
     aaataaaaag tgctgggaaa ataacggagt tttttaaatt taaataatgg ttgggctaac       300
     ttaacgacag cccaaccatt catgtgctaa acgatttctt tatgtcaact aaaagatctt       360
     gaaaaatgct ggcgaatgct gtactttaaa taaaaagtgc agagaaaaaa acgaagtttt       420
     ttatttaaat aatggttggg ctaacttaac gacagcccaa ccacaccgag tgccttcgag       480
     ttttttatgt caactaaaag accttaaaaa atgctggcga gtgctgtact taattcaaaa       540
     agtgctgaga aaataacatt ggtttttaat atcgaaaatt ggtgggctaa cttcttaacg       600
     gtggccggac agtccaatct tacaccgagt gctctacgat ttatttatac atatgaacta       660
     aaacgttttc aaaaatactg gcaaaggcta tactgcaaat aaaaagagct gggaaaacaa       720
     cagttacttt taattcaaaa tttattaggc ttagaaaagt tttgaaaatc tacatagaaa       780
     ctttagaagg agctatacct ctagtaaatt caaaaaacaa ggacagcatg ttagtatgga       840
     aaggcgaaga aaatattttc cctaaatata ctaacaaaaa tgaagataag ttatattcag       900
     ctgtacccaa agaagcagac gaccctcttt ctttgctaga gaaaacacat aaaaattcca       960
     aagaagtgga aacaacaaac gatgacaacg acgagacaat gaaagatgaa gaagatagag      1020
     cagttgaaaa ctggaaaggg gaaggtgcaa ctaaacctaa acgtccacgg agatcttatc      1080
     tggaaaatca aaaagaatgg gaatttatgg aactttcggc acggacaaaa acaattccta      1140
     tatctttaat taaaaatgga aactgttcta cattaagaac aatcacgatt aataaaaaaa      1200
     agtttatgtt tactaatacg tgtggatttg atgcacttgt tcaaatattg tcttcatgtt      1260
     actgtgactg ccccgcattt agagagggtg ttgtagatga taattttttg gccgaacttt      1320
     tacagaattt ggtcaaggga aaaatatcta gacattctta catactaaga gctaaaattt      1380
     tgtctcaaat ttttgatgaa gtcctcaggc ccgatggtct aatagaaatt ccttgcgtat      1440
     gtacgcagca attattaata gatagattag ctactaataa tttcttagaa tggtctaaga      1500
     aagaaatcac ggtttgctct aagtgtggtt acaatgaaac cagaaattac gcaacaatta      1560
     tgttaagtga caataattta gtagctgagc ttgttacaaa gacaatggag aaaacttgct      1620
     tttgtccaaa atgtgacgaa aagtatctga acgtgaaatc aaatttgaat gaaaactaca      1680
     tatttattga ctgggcatca gtttcattga ccaacacaaa tagaagtgtt cagttatgcc      1740
     aaattcctgc taatatagca ttaacccata aaaacctaaa ctacaaactt cagggggtag      1800
     tggaaattat cggtgaagga attcttgcta gtgatgtagg ccattttatt gcctattgta      1860
     aaaggccaaa tgaaaaatgg gaaatatatg acgatcttca agacaaagtg aacacaaact      1920
     gtcccccgga aaaagtttta agaggttgtg ccctacttgt ttatcgctgt ttgtaaaagt      1980
     ataatattta tattattttt ttattgttta ttttatgtta aaatgaaatg tttttttaaa      2040
     taaagtacta attattgtgt ttttattaaa caattccaat tcatgtgaat ctacttaaaa      2100
     aaaataaacg atatatgatg tacctaagta agcactacag ctcctgcatt taagggggag      2160
     aattttcgat attaaaaacc aatgttattt tctcagcact ttttgaatta agtacagcac      2220
     tcgccagcat tttttaaggt cttttagttg acataaaaaa ctcgaaggca ctcggtgtgg      2280
     ttgggctgtc gttaagttag cccaaccatt atttaaataa aaaacttgtt ttttttctca      2340
     gcacttttta tttaaagtac agcactcgcc agcatttttc aagatctttt agttgacata      2400
     aagaaatcat ttagcacatg aatggttggg ctgtcgttaa gttagtccaa ccattattta      2460
     aatttaaaaa actccgttat tttcccagca ctttttattt aaaatacggc atttgccagc      2520
     atttttaaag gacttttaaa tggcataaac aaaacgtcca gcacataaaa tggttgggcc      2580
     accgttaagt tagcccaacc aaaaaaacac aaaacatctc taaaactaaa gtagcatttt      2640
     ttaaataaat agcagcattc ttcagcactt tccgagcaca tttgaatgcc gtatgtgcat      2700
     tttcaaaatt tgaaagtggt tgggccaact taacgcacgt                            2740
//
ID   Rehavkus-3_TC repbase;    DNA;    INV; 18501 BP.
XX
AC   .
XX
DT   30-APR-2006 (Rel. 11.04, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 2)
XX
DE   This is a recently transposed Rehavkus-3_TC DNA transposon - a
DE   consensus sequence.
XX
KW   MuDR; DNA transposon; Transposable Element; Interspersed repeat;
KW   Rehavkus-3_TC; Rehavkus group.
XX
NM   Rehavkus-3_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-18501
RA   Kapitonov V.V., Gentles A.J. and Jurka J.;
RT   "Rehavkus-3_TC, a family of Rehavkus DNA transposons from the red
RT   flour beetle genome.";
RL   Repbase Reports 6(4), 196-196 (2006).
XX
DR   [1] (Consensus)
XX
CC   Rehavkus-3_TC belongs to the Rehavkus group of MuDR "cut and
CC   paste" DNA transposons. Transposons from this group are
CC   widespread in different metazoa, including insects, sea squirts,
CC   sea urchin and fish. The beetle genome harbors several ~95%
CC   identical copies of Rehavkus-3_TC. Its 709-bp inverted termini
CC   are composed of a 283-bp terminal inverted repeat and 167-bp
CC   subterminal minisatellite-like unit. In the 3' terminal portion,
CC   the minisatellite unit covers ~11-kb region. The transposon is
CC   flanked by 9-bp target site duplications and encodes a 1200-aa
CC   Rehavkus-3_TC transposase. Its C-terminal portion contains the
CC   PHD finger and Ulp1 cysteine protease.
XX
FH   Key           Location/Qualifiers
FT   CDS           1193..4797
FT                 /product="Rehavkus-3_TCp"
FT                 /translation="MEAVVYSSSLNFCHPYKITSFVKGVERDLTRNKLMKT
FT                 RPLIFRKDSIRTANMELLTVAGNYQQIKSESVIRKARSEALNLRKRFNDDN
FT                 LDLTSMQKSHAEYIKQVSFPLNIKIFSNEQLLVLQNSIDFNLYFDATGSVV
FT                 RNQSDPKSTVYYYAGVVVTKNHRVCPVLEMVSSEHATNNIQDLFVRFINFC
FT                 KESSMSNIPFETVVTDFSFANIHAVCLSFNEMTLNQYLSTCFDLAIHHKSV
FT                 PKKIKIIRLCAAHFMKNICTHLNEFVGQSKKSHHKSFIKELIACAFNLTTF
FT                 EDVKFWFENACIILMYETYNDAVQIALHNISSIANSLSTNLTKNIGDDDFG
FT                 IDHSVSVSEDFISHTKLRKNSPFYKEFLKIFNAVVAKEEKHNNSNIYCCKE
FT                 FMNYILDRYIPFLPMWTLIIHTKHSERVTNNAIERYFGILKNEVLERQTYL
FT                 APSLFIRHSRDYVLSIYREVKYNIGKEGLARAPKTKKDLSNGTIQSKRLKK
FT                 SPSSMVTDDKVFILSENDKISVASSFGSAGTIESQSDQIYSHKETWKSKPV
FT                 NKRASYFRGTHLKRQLFADKLDTIQEVSEVPEIIDVDKVPDINVMTPVAEK
FT                 SFQINFLPNGLINSIEYYLNNFTVGYRDFIVARFDNALGDKCLNNTEFKKI
FT                 SKHTLTNKVANILNSVLIKKYQLHAATIWSVQRSRMAIVLQKFSEKMPILR
FT                 NITYMILNEVEDKWVLLKIDIREREVGVFKPFGLKEIELQSYLTQFVNFVK
FT                 QYNTKKRNLSTFKMIPEDGWRMSAMMSEYTLDPLCSTANGLMVYWILTKLV
FT                 SKQSKPLDDSRSFDHEKFIKEIQTLLIHFSDDMTNNCLICGKIELDHTVNW
FT                 IRCNTCGRWFHTHHDDINTSQNLDSSKATFACLLCQKFFNIESSTHEIVKS
FT                 HLRENALMKNVDYYVECKAMGKTYTVAKYYNYGIINVLSVEDYQDLHGQQW
FT                 LSSMLIDQYLNLYYKVNCLTKEWFIDYLILESKKSEFIFFNEELQKLPRSF
FT                 FNELPRLAGKKVILIPILRSSHFTLAVVDFENKTFHYLNPMKSNTDHTSQM
FT                 FIRFKKFISEYKKYCSFNADLECFQLKTVEHDYQTDTNNCGIFVLFYIEAI
FT                 LNKNSLKQMPCTPQQYRINVKEFLLENSDDMQHVCMGCAKEVVTSEENFLK
FT                 CTFCLRLTHTYCLYAPWTIQNVCHLCVRNYNPKTSQSAVGT*X"
XX
SQ   Sequence 18501 BP; 5693 A; 2456 C; 3212 G; 5382 T; 1758 other;
     atttgtgtga agacagctcc caaaaccagc tcctcgaatt tccgaagaga cccgaacatg        60
     aagccagttt cagactagca aaataagttt cagtttgctt agatgtatgt ttggttgtca       120
     gctttgaaac cgtttaataa aataaaaatc cgaaaaaaca ctaaacaccc tcttaaaaat       180
     gacattttaa gaaagtcact atgctaatag cgaaaaactc aattatttac cacaaattgc       240
     tttttaattt ttcccacttt ttcacctaat ttcaatattt atggctccgc aaatgcatta       300
     ttgtagtttt cgccccattt caccccgaaa tcggttttgt cacacaatgc ccttttgacc       360
     actaattcaa caataaaaaa gacgtttttt aaaaataaaa ttatggcctt ttagttgtcg       420
     gaacaatgtt aaaaattgtt atgttgccca gctccgcaaa tgcactgttg cagttttcgc       480
     cccatttcac cccgaaatcg gttttgtcac acaatgccct tttgaccact aattcaacaa       540
     taaaaaagac gtttttaaaa ataaaattat ggccttttag ttgtcggaac aatgttaaaa       600
     ttgttatgtt gcccagctcc gcaaatgcac tattgcagtt ttcgccccat ttcaccccga       660
     aatcggtttt gtcacacaat gcccttttga ccaccaattc aacaacaaat gtagtcctgt       720
     tgatgatgtt cctttaagcg aagacactcc atattttgaa ttgaataaaa cactagatgt       780
     tacacgtgaa gacattgaag ttcctttagg actttcggat ctttcttttg taaaagccga       840
     tgaaaagcgc cgcctattac cattgggtac taaaaatgtt gagccaattt tgcacactcc       900
     tgtcagtcgg aggaaatacg attgctgcaa ttttttagaa ggaaaatttg caatcacaaa       960
     agttgtttgg aaattaattt ttgaagatgg tcaatttcat cctagaaatt atccatatta      1020
     ctttcgcaat agaatagcta aatacgttaa taacacgtgt aatattgctt tttataaatg      1080
     gcgcagtcgt aaaaatgaca cttttgtttt atatgcctac tgcagacata acaactcaaa      1140
     atgcaaaaat tttaaaattg aaataaaaaa aaatattaaa ttagatcaat acatggaagc      1200
     cgtcgtgtat tcatcttctc ttaacttttg ccatccatac aaaattacaa gttttgttaa      1260
     gggtgttgaa agagatttaa cacgaaacaa gctcatgaaa acgcgaccgc ttatttttcg      1320
     aaaagattca attcgtacag ctaatatgga acttctgaca gtagctggta attatcagca      1380
     aataaaatct gagtcggtga ttagaaaagc aaggtcagaa gctttaaatt taagaaaacg      1440
     tttcaacgat gataatttgg atttaacttc gatgcagaaa tcacacgctg aatacattaa      1500
     acaggtctca tttccattaa atataaaaat ttttagtaat gaacaattgc tagtattaca      1560
     aaattcgata gacttcaatt tatacttcga tgctacaggt tcggttgttc gaaatcagtc      1620
     tgatcctaag agtacagttt attattacgc tggtgtcgtt gttactaaaa atcatcgagt      1680
     gtgtccagtt ctagaaatgg tatcgtcgga acacgcaaca aataatattc aggacctctt      1740
     cgtgaggttt ataaacttct gtaaagaaag tagcatgtca aatataccct tcgaaactgt      1800
     tgttactgat ttcagtttcg caaatattca cgcggtatgt ctgtctttta atgaaatgac      1860
     gctcaatcaa tatttgtcca cgtgttttga tctagccatt caccataagt ccgtcccaaa      1920
     aaaaattaaa ataatccgtt tatgtgcagc tcattttatg aaaaatattt gcacgcattt      1980
     aaatgaattt gttggtcaat ctaagaagtc tcatcataaa tcgttcatca aggaattaat      2040
     tgcatgtgct ttcaacttaa ctaccttcga agatgttaag ttttggtttg aaaatgcttg      2100
     cattattcta atgtatgaaa cttataacga tgccgtgcaa atcgcattgc ataacatttc      2160
     aagtattgct aactctcttt ctacgaattt aacaaaaaat attggtgacg acgattttgg      2220
     tattgaccac agcgtttctg tttcggaaga ttttatatct catacaaaat taagaaaaaa      2280
     tagtccattt tacaaagaat ttttaaaaat tttcaatgct gttgttgcca aggaagaaaa      2340
     acataataat tcaaacatct actgttgtaa ggaatttatg aattatattc tagataggta      2400
     tattcctttt ttaccaatgt ggacgcttat aatccataca aaacattcag aaagagtgac      2460
     aaataatgca attgaaagat attttggaat tttgaagaat gaagtattgg aaagacaaac      2520
     atacttggca ccctctttat ttattcgaca ttcgagggat tacgtactta gtatttatcg      2580
     tgaagttaag tataatatag gaaaagaggg tttggccaga gctccaaaaa caaaaaaaga      2640
     tttaagtaat ggtactatac aatccaaaag gctgaaaaaa tcaccatcat caatggtgac      2700
     tgatgataaa gtctttatat tgagtgaaaa tgataaaatc agtgtcgctt cttcatttgg      2760
     aagtgctggt actattgaaa gtcaatcaga ccaaatttat tctcacaagg aaacttggaa      2820
     aagtaaacct gtaaataaac gggcatctta ctttcgagga actcatttaa agagacaatt      2880
     atttgctgat aaattggata ctatccaaga agtctcagaa gtacccgaaa taattgatgt      2940
     ggataaagtt cccgacataa atgtaatgac acctgtcgcc gaaaaatcgt ttcaaataaa      3000
     tttcttgccc aatggcttaa taaactccat cgagtattat ttaaataatt ttactgtagg      3060
     ctacagggac tttatagtgg cacggtttga caatgctttg ggagacaaat gtttaaataa      3120
     tacggaattc aaaaaaattt caaaacatac tctcactaat aaagttgcta atattttaaa      3180
     ttcagtttta ataaaaaaat atcagctaca cgcggccact atatggtctg ttcaaaggag      3240
     tcgaatggct atagtgctgc aaaaattttc tgaaaaaatg cctatcttac gtaatattac      3300
     atacatgata ttaaacgaag tggaagacaa atgggtttta cttaaaattg acattagaga      3360
     aagagaagta ggagttttta aaccatttgg tttaaaagaa attgaattgc aaagttatct      3420
     tacgcagttt gtaaattttg taaagcaata taacactaaa aaaaggaatt taagcacttt      3480
     taaaatgatt cctgaagatg gatggcgtat gtcggcaatg atgagcgaat acactttgga      3540
     tcctttgtgc tcaactgcaa acggtttaat ggtatattgg attttaacaa aattggtttc      3600
     aaaacaatca aaaccgttag atgattcaag gtcatttgat cacgaaaaat ttatcaaaga      3660
     aattcaaaca cttcttattc acttttctga cgatatgaca aataactgtt tgatttgtgg      3720
     aaaaatagaa ttggatcata cagtaaattg gatccgttgt aacacttgtg gcagatggtt      3780
     tcatactcat catgacgaca tcaacacaag tcaaaattta gattcgtcta aagccacatt      3840
     cgcctgcttg ttgtgtcaaa aattttttaa tattgaatca tccactcatg aaatcgtaaa      3900
     atctcatctt cgcgaaaatg ctctaatgaa aaacgttgat tattatgttg aatgtaaagc      3960
     aatgggtaaa acatataccg ttgccaagta ttataactac ggtataatta atgttttatc      4020
     agtagaagat taccaggatc ttcatggtca gcaatggtta agtagcatgc taattgatca      4080
     atatttaaat ttgtattata aggttaattg cttaaccaag gaatggttca tagactattt      4140
     gattttggag tcaaaaaaaa gtgaattcat tttttttaat gaggaactac aaaagttacc      4200
     aagaagtttt ttcaacgagc tacctaggct ggcgggaaaa aaagtaattt taattccaat      4260
     tctcagaagt tcccatttta cactggcagt agtggatttt gaaaataaaa cgttccacta      4320
     tttgaatcca atgaaatcca atacagatca cacatctcaa atgtttattc gatttaaaaa      4380
     gtttatatca gaatataaaa aatattgcag ttttaacgct gatctagaat gttttcaatt      4440
     aaagacggtt gaacatgact accaaactga tacaaacaat tgtggtattt ttgttctctt      4500
     ttatattgag gcaattttaa ataaaaactc attaaaacaa atgccatgta caccacaaca      4560
     atatagaata aacgtgaagg agtttttgtt ggaaaattca gatgacatgc aacatgtttg      4620
     tatgggatgt gccaaagaag ttgtaacttc tgaagaaaat tttctaaaat gtacattttg      4680
     tttgagacta actcatacat actgtcttta tgctccttgg acaattcaaa atgtgtgtca      4740
     tttatgtgta agaaattata atccaaaaac atctcaaagt gctgttggca cttaaaaatt      4800
     tacaacacat acataaaatt gagaaattta aaagtaacat aattttgtta tgtacttaaa      4860
     aaaatccggt ccacagcagg aggattctat agaaaatata ggatccgaat gtttataaaa      4920
     tatacctacc gaacctaggg cttatttata gaaacttttt gtttaaatga aacctttaca      4980
     tcatgactac acatttttag tgtaatattc ccgtttatat gatcagtact ttatattatt      5040
     agatattttt ttcgataaat agctctatta gtattgtacg agtaggtatc agcactgaaa      5100
     tattttctgg gtgttatcag cactgaaata ttttctgggt gttatcagca ctgaactact      5160
     ttttcggtgt tcgctacact gaaaagtgtt ctgggtgttt tttggaccgg atgataaagt      5220
     gcataatttt gagaattatg aaaaaactct aaattctaat attaaaaaga tgtttctttg      5280
     atccttgatg tctgtaatgg tttaacatgt aacaaagatg gttgtaacga atacaaggta      5340
     tgttgaaata aacgcaataa acttccaatt ataaatataa tgtttttgtt ttacagcatt      5400
     tatgttccac ttcggattaa ttcaatcgac agccaggctc taaaggttta ccacgaaaaa      5460
     tgagaaaaaa caaaagtggt tatcacgaat acaaggtatt cgtatgttga aataaactca      5520
     ataaatttcc aattataaat acaatctttt tgttttacag tatttatgtt ccacttcgga      5580
     ttaactcaat cgacagccag gctctaaagg tttaccacga aaaatgagaa aaaacaaaag      5640
     tggttatcac gtatacaagg tacttgtatg ttgaaataaa ctcaataaat ttccaattat      5700
     aaatacaatc tttttgtttt acagtattta tgttccactt cggattaact caatcgacag      5760
     ccaggctcta aaggtttacc acgaaaaatg agaaaaaaca aaagtggtta tcacgtatac      5820
     aaggtactcg tatgttgaaa taaactcaat aaatttccaa ttataaatac aatctttttg      5880
     ttttacagta tttatgttcc acttcggatt aactcaatcg acagccaggc tctaaaggtt      5940
     taccacgaaa aatgagaaaa aacaaaagtg gttatcacgt atacaaggta ctcgtatgtt      6000
     gaaataaact caataaattt ccaattataa atacaatctt tttgttttac agtatttatg      6060
     ttccacttcg gattaactca atcgacagcc aggctctaaa ggtttaccac gaaaaatgag      6120
     aaaaaacaaa agtggttatc acgaatacaa ggtactcgta tgttgaaata aactcaataa      6180
     atttccaatt ataaatacaa tctttttgtt ttacagtatt tatgttccac tccgaatcaa      6240
     ctcaaccgat agtcagtaat tcgacaactt caagttctcc aagattctcg aagtttaatc      6300
     gtcttaaatt tggtgcaaat ttttaaattt gttgttaaag ctataatttc gttattcaga      6360
     aatagtattt agtagtcctt atcctctaag atataattag tctattgtgt ttgtatatct      6420
     tgtggtaact gatatctatt gaaaagaaac ccgaatttat tcgaacaaat ttttacccgc      6480
     acattataac tttatattta attatgatta tgtttttttg atattcgcta ttccgcttgt      6540
     aagattcgaa aaaagttaaa ttttctgcaa aaaatctaag cacagttgtt ttctgtccta      6600
     agatcttacc tggtcggcag agacagccag tcttttatgt tttattgaaa gggcgcatga      6660
     gtcttaacac ttttacaaaa accgtcataa tttcacagat aaggtttatg aaggttgcat      6720
     aatcttagaa ggtaaggttt actaattact acactatttt tgttttgaaa gaaggcgttg      6780
     tgtaaaacat tctgtattta tgtttaaatt tgaaaggaaa tgtgcaatat aagtttgtta      6840
     cttgatttgt tactttattt aattggatag taaattttgt gttgtagtcg acaatactta      6900
     aaaaatatag ttttacttgg attataattg ctttaaattt ttcttttaag aaagnnnnnn      6960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaggcca taattttatt      7020
     tttgaaaaac gtctttttta ttgttgaatt ggtggtcaaa agggcattgt gtgacaaaac      7080
     cgatttcggg gtgaaatggg gcgaaaactg caatagtgca tttgcggagc tggacaagat      7140
     aaattttttt aacattgttc cgacaactaa aaggccataa ttttattttt gaaaaacgtc      7200
     ttttttattg ttgaattggt ggtcaaaagg gcattgtgtg acaaaaccga tttcggggtg      7260
     aaattgggcg aaaactgcaa tagtgcattt gcggagctgg acaagataaa tttttttaac      7320
     attgttccga caactaaaag gccataattt tatttttgaa aaacgtcttt tttattgttg      7380
     aattggtggt caaaagggca ttgtgtgaca aaaccgattt cggggtgaaa tggggcgaaa      7440
     actgcaatag tgcatttgcg gagctggaca agataaattt ttttaacatt gttccgacaa      7500
     ctaaaaggcc ataattttat ttttgaaaaa cgtctttttt attgttgaat tggtggtcaa      7560
     aagggcattg tgtgacaaaa ccgatttcgg ggtgaaattg ggcgaaaact gcaatagtgc      7620
     atttgcggag ctggacaaga taaatttttt taacattgtt ccgacaacta aaaggccata      7680
     attttatttt tgaaaaacgt cttttttatt gttgaattgg tggtcaaaag ggcattgtgt      7740
     gacaaaccga tttcggggtg aaatggggcg aaaactgcaa tagtgcattt gcggagctgg      7800
     acaacataac aatttttaac attgttccga caactaaaag accataattt tccttttaaa      7860
     aaacgtcttt tttattgtta aattgggggt ggggaagggc attgagtgac aaaaccgatt      7920
     tcagggtgaa atggggcgaa aactgcaata atgtatttgc ggagctggaa aacataacaa      7980
     tttttaacat tgttccgaca actaaaaggc cataatttta tttttaaaaa acgtcttttt      8040
     tattgttgaa ttggtggtca aaagggcatt gtgtgacaaa accgatttcg gggtgaaatg      8100
     gggcgaaaac tgcaataatg catttgcgga gctggacaac ataacaattt ttaacattgt      8160
     tccgacaact aaaaggccat aattttattt ttaaaaaacg tcttttttat tgttaaattg      8220
     gtggtcaaaa gggcattgtg tgacaaaacc gatttcgggg tgaaatgggg cgaaaactgc      8280
     aataatgcat ttgcggagct ggaaaacata acaattttta acattgttcc gacaactaaa      8340
     aggccataat tttcttttta aaaaacgtct tttttattgt tgaattggtg gtcaaaaggg      8400
     cattgtgtga caaaaccgat ttcggggtga aatggggcga aaactgcaat aatgcatttg      8460
     cggagctgaa caacataaca atttttaaca ttgttccgac aactaaaaga ccataatttt      8520
     atttttaaaa aacgtctttt ttattgttaa attggtggtc aaaagggcat tatgtgacaa      8580
     aaccgatttc ggggtgaaat ggggcgaaaa ctgcaataat gcatttgcgg agctggaaaa      8640
     cataacaatt tttaacattg ttccgacaac taaaaggcca taattttatt tttaaaaaac      8700
     gtctttttta ttgttgaatt ggtggtcaaa agggcattat gtgacaaaac cgatttcggg      8760
     gtgaaatggg gcgaaaactg caataatgca tttgcggagc tggaaaacat aacaattttt      8820
     aacattgttc cgacaactaa aaggccataa ttttattttt aaaaaacgtc ttttttattg      8880
     ttgaattggt ggtcaaaagg gcattatgtg acaaaaccga tttcggggtg aaatggggcg      8940
     aaaactgcaa taatgcattt gcggagctgg aaaacataac aatttttaac attgttccga      9000
     caactaaaag gccataattt tatttttaaa aaacgtcttt tttattgttg aattggtggt      9060
     caaaagggca ttatgtgaca aaaccgattt cggggtgaaa tggggcgaaa actgcaataa      9120
     tgcatttgcg gagctggaaa acataacaat ttttaacatt gttccgacaa ctaaaaggcc      9180
     ataattttat ttttaaaaaa cgtctttttt attgttgaat tggtggtcaa aagggcattg      9240
     tgtgacaaaa ccgatttcgg ggtgaaatgg ggcgaaaact gcaataatgc atttgcggag      9300
     ctggaaaaca taacaatttt taacattgtt ccgacaacta aaaggccata attttatttt      9360
     taaaaaacgt cttttttatt gttgaattgg tggtcaaaag ggcattgtgt gacaaaaccg      9420
     atttcggggt gaaatggggc gaaaactaca ataatgcatt tgcggagctg aacaacataa      9480
     caatttttaa cattgttccg acaactaaaa ggccataatt ttatttttaa aaaacgtctt      9540
     ttttattgtt gaattggtgg tcaaaagggc attatgtgac aaaaccgatt tcggggtgaa      9600
     atggggcgaa aactgcaata gtgcatttgc ggagctggaa aacataacaa tttttaacat      9660
     tgttccgaca actaaaaggc cataatttta tttttaaaaa acgtcttttt tattgttgaa      9720
     ttagtggtca aaagggcatt gtgtgacaaa accgatttcg gggtgaaatg gggcgaaaac      9780
     tgcaatagtg catttgcgga gctggaaaac ataacaattt ttaacattgt tccgacaact      9840
     aaaaggccat aattttattt ttaaaaaacg tcttttttat tgttgaattg gtggtcaaaa      9900
     gggcattgtg tgacaaaacc gatttcgggg tgaaatgggg cgaaaactgc aacagtgcat      9960
     ttgcggagct ggacaagata aattttttta acattgttcc gacaactaaa aagccataat     10020
     tttattttta aaaaacgtct tttttattgt tgaattagtg gtcaaaaggg cattgtgtga     10080
     caaaaccgat ttcggggtga aatggggcga aaactgcaat aatgcatttg cggagctgga     10140
     aaacataaca atttttaaca ttgttccgac aactaaaagg ccataatttt atttttaaaa     10200
     aacgtctttt ttattgttga attggtggtc aaaagggcat tgtgtgacaa aaccgatttc     10260
     ggggtgaaat ggggcgaaaa ctacaataat gcatttgcgg agctgaacaa cataacaatt     10320
     tttaacattg ttccgacaac taaaaggcca taattttatt tttaaaaaac gtctttttta     10380
     ttgttgactt ggtggtcaaa agggcattat gtgacaaaac cgatttcggg gtgaaatggg     10440
     gcgaaaactg caataatgca tttgcggagc tggaaaacat aacaattttt aacattgttc     10500
     cgacaactaa aaggccataa ttttattttt aaaaaacgtc ttttttattg ttgaattggt     10560
     ggtcaaaagg gcattatgtg acaaaaccga tttcggggtg aaatggggcg aaaactgcaa     10620
     taatgcattt gcggagctgg aaaacataac aatttttaac attgttccga caactaaaag     10680
     gccataattt tatttttaaa aaacgtcttt tttattgttg aattggtggt caaaagggca     10740
     ttgtgtgaca aaaccgattt cggggtgaaa tggggcgaaa actacaataa tgcatttgcg     10800
     gagctgaaca acataacaat ttttaacatt gttccgacaa ctaaaaggcc ataattttat     10860
     ttttaaaaaa cgtctttttt attgttgaat tggtggtcaa aagggcatta tgtgacaaaa     10920
     ccgatttcgg ggtgaaatgg ggcgaaaact gcaataatgc atttgcggag ctggaaaaca     10980
     taacaatttt taacattgtt ccgacaacta aaaggccata attttatttt taaaaaacgt     11040
     cttttttatt gttgaattgg tggtcaaaag ggcattgtgt gacaaaaccg atttcggggt     11100
     gaaatggggc gaaaactaca ataatgcatt tgcggagctg aacaacataa caatttttaa     11160
     cattgttccg acaactaaaa ggccataatt ttatttttaa aaaacgtctt ttttattgtt     11220
     gaattggtgg tcaaaagggc attatgtgac aaaaccgatt tcggggtgaa atggggcgaa     11280
     aactgcaata gtgcatttgc ggagctggaa aacataacaa tttttaacat tgttccgaca     11340
     actaaaaggc cataatttta tttttaaaaa acgtcttttt tattgttgaa ttggtggtca     11400
     aaagggcatt gtgtgacaaa accgatttcg gggtgaaatg gggcgaaaac tgcaataatg     11460
     catttgcgga gctggaaaac ataacaattt ttaacattgt tccgacaact aaaaggccat     11520
     aattttattt ttaaaaaacg tcttttttat tgttgaattg gtggtcaaaa gggcattatg     11580
     tgacaaaacc gatttcgggg tgaaatgggg cgaaaactgc aataatgcat ttgcggagct     11640
     ggaaaacata acaattttta acattgttcc gacaactaaa aggccataat tttattttta     11700
     aaaaacgtct tttttattgt tgaattggtg gtcaaaaggg cattatgtga caaaaccgat     11760
     ttcggggtga aatggggcga aaactgcaat agtgcatttg cggagctgga aaacataaca     11820
     atttttaaca ttgttccgac aactaaaagg ccataatttt atttttaaaa aacgtctttt     11880
     ttattgttga attggtggtc aaaagggcat tgtgtgacaa aaccgatttc ggggtgaaat     11940
     ggggcgaaaa ctgcaataat gcatttgcgg agctggaaaa cataacaatt tttaacattg     12000
     ttccgacaac taaaaggcca taattttatt tttaaaaaac gtctttttta ttgttgaatt     12060
     ggtggtcaaa agggcattgt gtgacaaaac cgatttcggg gtgaaatggg gcgaaaactg     12120
     caataatgca tttgcggagc tgaacaacat aacaattttt aacattgttc cgacaactaa     12180
     aaggccataa ttttattttt aaaaaacgtc ttttttattg ttgaattggt ggtcaaaagg     12240
     gcattgtgtg acaaaaccga tttcggggtg aaatggggcg aaaactgcaa taatgcattt     12300
     gcggagctga acaacataac aatttttaac attgttccga caactaaaag gccataattt     12360
     tatttttaaa aaacgtcttt tttattgttg aattggtggt caaaagggca ttgtgtgaca     12420
     aaaccgattt cggggtgaaa tggggcgaaa actgcaataa tgcatttgcg gagctggaaa     12480
     acataacaat ttttaacatt gttccgacaa ctaaaaggcc ataattttat ttttaaaaaa     12540
     cgtctttttt attgttgaat tagtggtcaa aagggcattg tgtgacaaaa ccgatttcgg     12600
     ggtgaaatgg ggcgaaaact gcaataatgc atttgcggag ctggaaaaca taacaatttt     12660
     taacattgtt ccgacaacta aaaggccata attttatttt taaaaaacgt cttttttatt     12720
     gttgaattgg tggtcaaaag ggcattgtgt gacaaaaccg atttcggggt gaaatggggc     12780
     gaaaactgca acagtgcatt tgcggagctg gacaagataa atttttttaa cattgttccg     12840
     acaactaaaa agccataatt ttatttttaa aaaacgtctt ttttattgtt gaattagtgg     12900
     tcaaaagggc attgtgtgac aaaaccgatt tcggggtgaa atggggcgaa aactgcaata     12960
     atgcatttgc ggagctggaa aacataacaa tttttaacat tgttccgaca actaaaaggc     13020
     cataatttta tttttaaaaa acgtcttttt tattgttgaa ttggtggtca aaagggcatt     13080
     gtgtgacaaa accgatttcg gggtgaaatg gggcgaaaac tgcaatagtg catttgcgga     13140
     gctgggcaac ataacaattt ttaacattgt tccgacaact aaaaggccat aattttattt     13200
     ttaaaaaacg tcttttttat tgttgaatta gtggtcaaaa gggcattgtg tgacaaaacc     13260
     gatttcgggg tgaaatgggg cgaaaactgc aacagtgcat ttgcggagct ggacaagatt     13320
     aattttttga acattgttcc gacaactaaa aggccataat tttatttttg aaaaacgtct     13380
     tttttattgt tgaattggtg gtcaaaaggg cattgtgtga caaaaccgat ttcggggtga     13440
     aatggggcga aaactgcaat agtgcatttg cggagctgga caagataaat ttttttaaca     13500
     ttgttccgac aactaaaagg ccataatttt atttttgaaa aacgtctttt tattgttgaa     13560
     ttggtggtca aaagggcatt gtgtgacaaa accgatttcg gggttaaatg gggcgaaaac     13620
     tgcaatagtg catttgcgga gctgggcaac ataacaattt ttaacattgt tccgacaact     13680
     aaaaggccat aattttattt ttgaaaaacg tcttttttat tgttgaattg gtggtcaaaa     13740
     gggcattgtg tgacaaaacc gatttcgggg tgaaatgggg cgaaaactgc aatagtgcat     13800
     ttgcggagct gggcaacata acaattttta acattgttcc gacaactaaa aggtcataat     13860
     tttattttta aaaaacgtct tttttatagt tgaattggtg gtcaaaaggg cattgtgtga     13920
     caaaaccgat ttcggggtga aatggggcga aaactgcnnn nnnnnnnnnn nnnnnnnnnn     13980
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14040
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14100
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14160
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14220
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14280
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14340
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14400
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14460
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14520
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14580
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14640
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14700
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14760
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14820
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14880
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     14940
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15000
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15060
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15180
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15240
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15540
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15600
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     15660
     nnnnnaaccg atttcgggtg aaatgggcga aactgcaata atgcatttgc ggagctggaa     15720
     aacataacaa ttttaacatt gtccgacaac taaaaggcca taattttatt tttaaaaaac     15780
     gtctttttta ttgttgaatt ggtggtcaaa agggcattgt gtgacaaaac cgatttcggg     15840
     gtgaaatggg gcgaaaacta caataatgca tttgcggagc tgaacaacat aacaattttt     15900
     aacattgttc cgacaactaa aaggccataa ttttattttt aaaaaacgtc ttttttattg     15960
     ttgaattggt ggtcaaaagg gcattatgtg acaaaaccga tttcggggtg aaatggggcg     16020
     aaaactgcaa taatgcattt gcggagctgg aaaacataac aatttttaac attgttccga     16080
     caactaaaag gccataattt tatttttaaa aaacgtcttt tttattgttg aattggtggt     16140
     caaaagggca ttatgtgaca aaaccgattt cggggtgaaa tggggcgaaa actgcaataa     16200
     tgcatttgcg gagctggaaa acataacaat ttttaacatt gttccgacaa ctaaaaggcc     16260
     ataattttat ttttaaaaaa cgtctttttt attgttgaat tggtggtcaa aagggcatta     16320
     tgtgacaaaa ccgatttcgg ggtgaaatgg ggcgaaaact gcaataatgc atttgcggag     16380
     ctggaaaaca taacaatttt taacattgtt ccgacaacta aaaggccata attttatttt     16440
     taaaaaacgt cttttttatt gttgaattgg tggtcaaaag ggcattgtgt gacaaaaccg     16500
     atttcggggt gaaatggggc gaaaactgca ataatgcatt tgcggagctg gaaaacataa     16560
     caatttttaa cattgttccg acaactaaaa ggccataatt ttatttttaa aaaacgtctt     16620
     ttttattgtt gaattggtgg tcaaaagggc attgtgtgac aaaaccgatt tcggggtgaa     16680
     atggggcgaa aactgcaata atgcatttgc ggagctgaac aacataacaa tttttaacat     16740
     tgttccgaca actaaaaggc cataatttta tttttaaaaa acgtcttttt tattgttgaa     16800
     ttggtggtca aaagggcatt gtgtgacaaa accgatttcg gggtgaaatg gggcgaaaac     16860
     tgcaataatg catttgcgga gctggaaaac ataacaattt ttaacattgt tccgacaact     16920
     aaaaggccat aattttattt ttaaaaaacg tcttttttat tgttgaattg gtggtcaaaa     16980
     gggcattgtg tgacaaaacc gatttcgggg tgaaatgggg cgaaaactac aataatgcat     17040
     ttgcggagct ggaaaacata acaattttta acattgttcc gacaactaaa aggccataat     17100
     tttattttta aaaaacgtct tttttattgt tgaattggtg gtcaaaaggg cattatgtga     17160
     caaaaccgat ttcggggtga aatggggcga aaactgcaat agtgcatttg cggagctgga     17220
     aaacataaca atttttaaca ttgttccgac aactaaaagg ccataatttt atttttaaaa     17280
     aacgtctttt ttattgttga attagtggtc aaaagggcat tgtgtgacaa aaccgatttc     17340
     ggggtgaaat ggggcgaaaa ctgcaatagt gcatttgcgg agctggaaaa cataacaatt     17400
     tttaacattg ttccgacaac taaaaggcca taattttatt tttaaaaaac gtctttttta     17460
     ttgttgaatt ggtggtcaaa agggcattgt gtgacaaaac cgatttcggg gtgaaatggg     17520
     gcgaaaactg caacagtgca tttgcggagc tggacaagat aaattttttt aacattgttc     17580
     cgacaactaa aaagccataa ttttattttt aaaaaacgtc ttttttattg ttgaattagt     17640
     ggtcaaaagg gcattgtgtg acaaaaccga tttcggggtg aaatggggcg aaaactgcaa     17700
     taatgcattt gcggagctgg aaaacataac aatttttaac attgttccga caactaaaag     17760
     gccataattt tatttttaaa aaacgtcttt tttattgttg aattggtggt caaaagggca     17820
     ttgtgtgaca aaaccgattt cggggtgaaa tggggcgaaa actgcaatag tgcatttgcg     17880
     gagctgggca acataacaat ttttaacatt gttccgacaa ctaaaaggcc ataattttat     17940
     ttttaaaaaa cgtctttttt attgttgaat tagtggtcaa aagggcattg tgtgacaaaa     18000
     ccgatttcgg ggtgaaatgg ggcgaaaact gcaacagtgc atttgcggag ctgggcaaca     18060
     taacaatttt taacattgtt ccgacaacta aaaggccata attttatttt taaaaaacgt     18120
     cttttttatt gttgaattag tggtcaaaag ggcattgtgt gacaaaaccg atttcggggt     18180
     gaaatggggc gaaaactaca ataatgcatt tgcggagcca taaatattga aattaggtga     18240
     aaaagtggga aaaattaaaa agcaatttgt ggtaaataat tgagtttttc gctattagca     18300
     tagtgacttt cttaaaatgt catttttaag agggtgttta gtgttttttc ggatttttat     18360
     tttattaaac ggtttcaaag ctgacaacca aacatacatc taagcaaact gaaacttatt     18420
     ttgctagtct gaaactggct tcatgttcgg gtctcttcgg aaattcgagg agctggtttt     18480
     gggagctgtc ttcacacaaa t                                               18501
//
ID   Rehavkus1_AP repbase;    DNA;    INV; 4934 BP.
XX
AC   .
XX
DT   24-JUN-2009 (Rel. 14.07, Created)
DT   27-MAY-2011 (Rel. 16.05, Last updated, Version 3)
XX
DE   DNA transposon.
XX
KW   MuDR; DNA transposon; Transposable Element; Rehavkus1_AP.
XX
NM   Rehavkus1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4934
RA   Jurka J.;
RT   "DNA transposons from pea aphid.";
RL   Repbase Reports 9(7), 1363-1363 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(690..1340,1344..2486,2490..3095)
FT                 /product="Rehavkus1_AP_1p"
FT                 /translation="MHVYRSYCQSTSYPKIIIDATGSLIKNFKKFGMNKTK
FT                 TIYLYEALVYDESKLHSFTVSNMISERHTTLAIYNWLANWLNFNVPSPRET
FT                 VCDQSMALLSACVKCFTQYSSLKQYIRVCAKLALGKLSPDPIWLLNCFIRT
FT                 DVAHFIKLVSKWVPLKNTQGRVKEVILRSIGVIIKNQSISEIYSIVLSLFV
FT                 VLTNESDGINAETGRDTPCEYHKKKIIITSTGFVNYEEWYNEVFSTVDSEE
FT                 EIRDFIEEDETKNIDLDNDKNSFQSWAEEIFEKSKEYIEEGNGINVMYLPK
FT                 LVPLIIKCMHFLPLWSGFMIPIFKYGKLTASSAGVESSFKKLKIVTFKDMD
FT                 LPTNIDLFLERHIISLRGNSLLRSSNYTHTSDNFQEVIPINQTNELHEDDF
FT                 IRIDENNINDIIMDIENEIPIKKSITVNSNNCEENTAKEGWDRKSKRQRIT
FT                 NSYLNSNSHLRHIDLNNSRSMTSLPNLKNGSKVTDLKTRNLKDYGKVAISN
FT                 TCAFDTLASIFMVAYCTSKRYTEEINCLDNTNEFLSFVSSIVKKGINPTTY
FT                 KERAQIMLSYLEPEKTKIDYDITLVSCHATTEFVIKKLFLDIPTAFDYTLC
FT                 NPKCDYSTENQKPVTYVTFHTENSLDGLQNFLLERLSIDYLTCGHINQYQT
FT                 HPCSGDKTIRTEASTKHLFIEILKWEGTYSKYINKNITYNHYIQLFMLSYF
FT                 LITGDITFYQDQSSEAAPQLKIPLKDIPQVLTHNNTTYELRGVCDYRKGLS
FT                 RLRTSVGHYVAYCKRGPNNWELFDDTNKKSKAVSQNTEVLCELLIYTV*"
XX
SQ   Sequence 4934 BP; 1794 A; 776 C; 780 G; 1584 T; 0 other;
     cacgaccgtc tcaccagaac cgcccattca aaaatttcaa tttttttttt tacagggaat        60
     tagcacgtaa ttagcatgaa tttgcacgac tatcgccaaa atttacacct gtatgacaaa       120
     aaatgatatg cggtgctgga gagacgtctc gccagcaccg cccaacatct aaaattatta       180
     ataataacag acttgatatg ttaaaatgta gcacgtaatt agcatgaatt tgcacgacag       240
     accccgaaat tcacacgtgt ctggttcgcg agaaaaaccc gtttgactat ttcgcgcgtc       300
     tcgccagcac cgcccaaaat ggaaattttg cgaaaatcga aaaactgttt gcgccaatat       360
     ttagcacgtg attagcatga atttgcacga ctgactccga aattcgcacg tgtctggttc       420
     gcgagcaaaa accgttcgac tttttcgcgc ttctcgccag caccgcccta aagtgttaat       480
     aaccttcaaa tataataaaa cactacacat ttaaaaaaag aaaatcaccc gctaataatt       540
     tgcaaaataa tattctctta tcgcatcact atagttgtgg attacataat attatgtact       600
     attaattttt taacgaaaat gagtataaag acattctaca tgatttaagt tgggaaccat       660
     tttatatcca ttaccatagt ggcgaacaga tgcatgtcta cagaagttac tgtcaaagta       720
     cttcttatcc taagatcata attgatgcaa ctggatcatt aattaagaac tttaaaaaat       780
     ttggaatgaa taaaactaaa acgatttatc tatacgaagc tttggtgtac gatgaatcaa       840
     aactacacag ctttacggtt tcaaacatga taagtgagcg gcatacaact ctggctatct       900
     ataactggct agcaaactgg ttaaatttta atgttccttc acctagagaa actgtttgtg       960
     accaatctat ggccctgttg tcagcatgtg tgaaatgttt tacccagtat tcttcactaa      1020
     aacagtatat cagagtttgt gctaagttag cattaggtaa gctatcgccg gatccaattt      1080
     ggttgctcaa ttgttttata cgaacagatg ttgctcactt tataaaatta gtgagtaaat      1140
     gggttccatt aaaaaatact caaggtagag ttaaagaagt aattctacgc agcataggag      1200
     taataattaa aaaccaatcc atatctgaaa tttattcaat tgtattatcc ctatttgtcg      1260
     tgttaactaa tgaatctgat ggaattaatg cagaaacagg aagagacact ccatgtgagt      1320
     atcataaaaa aaaaataatt taaataacat caactggttt tgtcaattat gaagaatggt      1380
     acaatgaagt gttttcaact gttgattctg aggaagagat tcgtgatttt attgaagaag      1440
     atgaaacaaa aaatattgat cttgataatg acaaaaattc atttcagagt tgggctgaag      1500
     aaatatttga aaagagcaaa gaatatattg aagaaggtaa tggcattaat gttatgtatt      1560
     tgccaaaatt agtgccatta ataattaaat gtatgcattt tttaccctta tggtcaggct      1620
     tcatgatacc aatttttaaa tatggaaaat taacagcgag ttctgcaggg gtagaatcaa      1680
     gttttaaaaa actaaaaatt gtaactttta aagacatgga ccttcctaca aatattgatt      1740
     tgtttttaga aagacacata atatctcttc gtggaaattc tcttttgcgg tcttcaaatt      1800
     acacacatac aagtgacaac tttcaagaag taataccgat taatcagact aatgaattgc      1860
     acgaagatga ctttattcga attgacgaaa ataatattaa tgatattata atggacattg      1920
     aaaacgaaat cccgataaag aaatctataa cggtaaatag taataactgt gaagagaaca      1980
     ctgctaaaga aggatgggat agaaaatcca aaagacaacg aataacaaat tcgtacttaa      2040
     actcaaactc acatttgcgt catatagact taaataattc acgcagcatg acatcactac      2100
     ccaatttaaa aaatggttca aaagttactg atctaaaaac tcggaattta aaagattatg      2160
     gtaaagtggc aattagtaat acttgtgcct ttgatacact ggcttcaata ttcatggtgg      2220
     cttattgtac aagtaagcga tatacggaag aaataaattg cttggataac acaaatgaat      2280
     ttctttcttt tgtatcgtcg attgtcaaaa aaggaatcaa ccctacaaca tacaaagaaa      2340
     gagctcaaat aatgttaagt tatctcgaac cagaaaaaac aaaaattgac tatgacataa      2400
     cattggtttc atgccatgca acaacagaat ttgtcataaa aaagctattt ttagatatac      2460
     ctacggcatt tgattatacg ttatgttgaa accctaaatg tgactactca acggaaaacc      2520
     aaaaaccagt gacatacgta acatttcaca cagaaaatag tctagatggt ttacaaaatt      2580
     ttttattaga aagattatcg atagattatt tgacttgtgg acatataaat caatatcaaa      2640
     cccacccatg tagtggtgat aaaactatta gaaccgaagc atctacaaaa catttattca      2700
     tagaaattct taaatgggaa ggtacttaca gtaaatatat taacaaaaat ataacctaca      2760
     accattatat acaattattt atgttatcgt attttttaat tacaggagac attactttct      2820
     atcaagacca atcatcagaa gctgctccac aactaaaaat acctcttaag gatataccac      2880
     aagttctaac acataataac acgacatatg aattgcgagg tgtatgtgac tatcggaaag      2940
     ggctaagtag attgcgcaca tctgtaggac actatgtagc gtactgtaaa agaggaccta      3000
     acaattggga actatttgat gacaccaaca aaaaatcaaa agcagtcagt caaaatacag      3060
     aagtattgtg tgagcttctc atttacacag tataaaaaat gtactattaa cttaccacta      3120
     aatgtacaaa gaaaatattt ttacttaata aatttaaatt ttataggtac tactttaaaa      3180
     taacttgaaa gtatattatt atctattaaa aattattcca gcctccaaat atatccaatt      3240
     aaaaaaaaaa aaattcaata agactgtcag aaatttctat taaacgtttg aaaaactctg      3300
     tgtgaaattc taataaatac taaataatac tgcagcagtg taatgagctg ggaaggaaaa      3360
     tacttcatac atgtacttat ttatacaata agtacccata cccttggata tataatattt      3420
     atgatgcaat cggcttcagt cgcccgagaa accgaaaact aatttaattg tgactataaa      3480
     gaaatattat aagttgattt tgaatttacg tggatgcgtc tgagtaaagt taaagttaaa      3540
     ttaatgaaaa catcaaacag gtaacattat ttcaaaattt ctaaccagaa attacatttc      3600
     aaaaatcttt tatttaaaaa tataaacttg gtgcagctcg ttactaggat aatagattct      3660
     tcttttttaa tataaaccaa tggcaagtac gtcttgcaat caatcaggaa cgtctcgata      3720
     ccatactata attatttatt tcgtaataaa ttatgtataa tgtatattgt aaataagaca      3780
     aacatttttg ttcagaattt tattaaattg tattattgcg ggcaccttga tataggtaac      3840
     atcagtagtg tcataaaaat gtcatacaat ttttaataat attttcacaa acatttaata      3900
     gttaaaaatg gttagctaat ttatataata tactattaca aaataaatta tagatttcta      3960
     ttgtttttta aacttaatct attattaatt ttcaatatta gtattttatt ttataatatt      4020
     tatttttaag tcaataaaaa tgagatgtgt aagttcctaa ttcatacact gtaaaaaaaa      4080
     gttgatcatg ttagatttta taaacatatt attatattta tctaattatg aatgtgtatt      4140
     atatgtgatt attttttttt ttttttttta ggacatatta atcagttaga gaacatttga      4200
     tatataaatt aatatagttt ttactgtgta tgaatttata tatataattt ttccgccgtg      4260
     taggtataag aactaacata cgtacctacc tgctatttac catgtgggaa cttatattat      4320
     gtacctttta atattgtaag agcttaaatt tgtatttttt ttacccacta gggctcccgt      4380
     aggaacttac attcacccga taattcataa tatgctaatc gtgtactgaa tttcgtctta      4440
     acaattttaa gacttacgtg gttaggcgag acgagcgaaa tagtcgaacg ggttttgctc      4500
     gcgaaccaga cacgtgcgaa tttcggagtc agtcgtgcaa attgatgcta atcacgtgct      4560
     aaatattggc gaaaacagtt tttcgatttt cgcaaaattt ctattttggg cggtgctggc      4620
     gagacgcgcg aaatagtcaa acgggttttg ctcgcgaacc agacacgtgc gaatttcggg      4680
     gtctgtcgtg caaattcatg ctaattacgt gctacatttt aacatatcaa gtctgttatt      4740
     attaataatt ttagatgttg ggcggtgctg gcgagacgtc tctccagcac cgcacatcat      4800
     tttttgtcat acaggtgtaa atgttgtcat gcaaattttg gcgatagtcg tgcaaattca      4860
     tactaattac gtgctaattc cctgtaaaaa aaaattgaaa tttttgaatg ggcggttctg      4920
     gcgagacggt cgtg                                                        4934
//
ID   REP-1_CQ    repbase;    DNA;    INV; 2099 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   Repetitive element; nonautonomous; REP-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2099
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 604-604 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >92%
CC   identity. No TIRs.
XX
SQ   Sequence 2099 BP; 598 A; 466 C; 387 G; 641 T; 7 other;
     ttttgccttc ctcactgagg taaggctata atcctgctck aaaaatgaac ttttgawaaa        60
     magctcgtag acccacmttc atgtatacmt atcgactcag aatcgaaaac tgaacaaatg       120
     tctgtgtgtg tgtgtgtatg tgtgtgcgta ttccccttgg tgcccaaaat tctcgccgag       180
     ttttctcggc actggctgat ccgatttkgg tcaaaccagt tgcattcgac ccggtttggt       240
     gccccatact gcgctattga attgtttgaa gatccgataa gtagttcaaa agttacgtat       300
     aaaaaagtgt cagagtcgcg aatcggatct cacttaaatg catgtaaact atgtccggac       360
     ccatcacccg acccatcgtt ggttaggtaa tcgaaagacc tttccaacga gtccaaaaca       420
     ttgaagatct ggcaaccctg tctcgagtta tgaccactta agtgatattt atgtactttt       480
     ttgaagccgg atctcactta aatgtatgta aactatgtcc ggatccatca tccaacccat       540
     cgttggwtag gtaatcgaaa gacctttcca atgagtccaa aacattgaag atctggcaac       600
     cctgtctcga gttatgacca cttaagtgat atttatgtac ttttttgaag ccggatctca       660
     cttaaatgta tgtaaactat gtccggatcc atcatccaac ccatcgttgg ttaggtaatc       720
     gaaagacctt tccaatgagt ccaaaacatt gaagatctgg caaccctgtc tcgagttatg       780
     accacttaag tgatatttat gtactttttt gaagccggat ctcacttaaa tgtatgtaaa       840
     ctatgtccgg atccatcatc caacccatcg ttggttaggt aatcgaaaga cctttccaat       900
     gagtccaaaa cattgaagat ctggcaaccc tgtctcgagt tatgaccact taagtgatat       960
     ttatgtactt ttttgaagcc ggatctcact taaatgtatg taaactatgt ccggatccat      1020
     catccgaccc atcgttggtt aggtaatcga aagacctttc caatgagtcc aaaacattga      1080
     agatctggca accctgtctc gagttatgac cacttaagtg atatttatgt acttttttga      1140
     agccggatct cacttaaatg tatgtaaact atgtccggat ccatcatcca acccatcgtt      1200
     ggttaggtaa tcgaaagacc tttccaatga gtccaaaaca ttgaagatct ggcaaccctg      1260
     tctcgagtta tgaccactta agtgatattt atgtactttt ttgaagccgg atctcactta      1320
     aatgtatgta aactatgtcc ggatccatca tccaacccat cgttggttag gtaatcgaaa      1380
     gacctttcca atgagtccaa aacattgaag atctggcaac cctgtctcga gttatgacca      1440
     cttaagtgat atttatgtac ttttttgaag ccggatctca cttaaatgta tgtaaactat      1500
     gtccggatcc atcatccgac ccatcgttgg ttaggtaatc gaaagacctt tccaatgagt      1560
     ccaaaacatt gaagatctgg caaccctgtc tcgagttatg accacttaag tgatatttat      1620
     gtactttttt gaagccggat ctcacttaaa tgtatgtaaa ctatgtccgg atccatcatc      1680
     caacccatcg ttggttaggt aatcgaaaga cctttccaat gagtccaaaa cattgaagat      1740
     ctggcaaccc tgtctcgagt tatgaccact taagtgatat ttatgtactt ttttgatgcc      1800
     ggatctcact taaatgtatg taaactatgt ccggatccat catccaaccc atcgttggtt      1860
     aggtaatcga aagacctttc caatgagtcc aaaacattga agatctggca accctgtctc      1920
     gagttatgac cacttaagtg atatttatgt acttttttga agccggatct cacttaaatg      1980
     tatgtaaact atgtccggat ccatcatccg acccatcgtt ggttaggtaa tcgaaagacc      2040
     tttccaatga gtccaaaaca ttgaagatct ggcaaccctg tctcgagtta tgaccactt       2099
//
ID   REP-1_HMM   repbase;    DNA;    INV; 1001 BP.
XX
AC   .
XX
DT   08-MAR-2013 (Rel. 19.10, Created)
DT   08-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Repeat from Heliconius melpomene melpomene.
XX
KW   REP-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-1001
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from Postman butterfly.";
RL   Repbase Reports 14(10), 2879-2879 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. The 5' end is similar to that of
CC   REP-1B_PPo.
XX
SQ   Sequence 1001 BP; 329 A; 157 C; 137 G; 378 T; 0 other;
     tttttaaccg acttctgtaa gaaaaggagg ttatcaattc gactgtattt tttttttttt        60
     attttttttt ttattttttt ttttatgttt gttacctcat aacttttaac tgggtggacc       120
     gattttgata attttttttt tatttgaaag gtatagcttc ccgaatggtc ccattttttt       180
     ttggtccatg tctgacaatg gtatccatga gaaaatcaca taagtcttaa atttgcatta       240
     tgcatgtgcg cgactaatag ccgaataact caatgtcgcg ccaaccgatt ttgatgattc       300
     tttttttatt tgaaaggata cacttcaagg ataatttggt gaaagtttgg ttaggtttcg       360
     attatggaat ccggagaaaa ttgagaaagt ttgttttttt tggtcaaaaa ttaattatac       420
     tgtaatagtt acaagcaaaa actttttaaa ttgatgtcag aagtgagatt cctgatcgtt       480
     gcatttcttt tcaaccaatc tcaaaaaaga ggatgttctc attttcaacc aacttcaaaa       540
     aagggagatt ccgaattcac ccgaatactt tttatgtttg ttcttgtcaa tataccaaaa       600
     tgtaactttg cacaaaaata atagctaatt aaatgaagtt ttacatagaa caatcacaac       660
     cactcgttga caaccactac caccaccatc accactcgtt caagaagcat cattttaaga       720
     tctacccatc actaaaaatc gtaaaataaa ttaattttta acaaaaacaa aaaccgactt       780
     ctaacaacga actaaaaagt gaaaaataat tatataaaga ttttataatt ttgaagtcgg       840
     tgtcaaacta atgctacaac acctttacta caatatctaa ttactaagcc tgtttgtttt       900
     acttggcacc gacttcaaaa ttataaaatc tttatataat tatttttcac tttttagttc       960
     gttgttagaa gtcggttttt gtttttgtta aaaattaatt t                          1001
//
ID   REP-1_LMi   repbase;    DNA;    INV; 292 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 20.01, Created)
DT   05-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Repititive sequences from the migratory locust.
XX
KW   Nonautonomous; REP-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-292
RA   Bao W. and Jurka J.;
RT   "Repeats from the migratory locust.";
RL   Repbase Reports 15(1), 339-339 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. It contains long inverted repeat.
XX
SQ   Sequence 292 BP; 87 A; 52 C; 64 G; 89 T; 0 other;
     tgaaaacata ttttggggaa acagcgatct attggaaagt atttataaat aaaaacagtc        60
     acaaatcgca aaaaatatca tttatacaaa aatgatgacc ggtttcggcc tgtttacagg       120
     gccatcttca gatccatgtg gcgtaggctt gacgtccacg gagcaggcgc ttgtcccatg       180
     cggtaactgc tggccgcatg gattgaagat ggccctgtaa acaggccgaa accggttatc       240
     atttttgtat aaatgatttt ttttgcgatt tgtgactgtt tttatttata aa               292
//
ID   REP-1_PBa   repbase;    DNA;    INV; 3439 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   repetitive element from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-3439
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (11-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. TSDs are uncertain. The sequence
CC   18-459 is similar to Gypsy-13_PBa-LTR.
XX
SQ   Sequence 3439 BP; 1131 A; 576 C; 574 G; 1158 T; 0 other;
     tatatatata tatatattgt gacgaacata tcgccacgga tcttaaagcc gaacacgcgg        60
     gatcattaga caaacacaca tatacacgca cacatagttg agatactccg agccgttagc       120
     tatttacgcg gaatcggcag acaaatatga cgactgtttt tttaaataga gatttcgcct       180
     aatcgttttg cgttgagaga ttgagtgtct aggcatcttc ccgaatttct tagcatgcag       240
     attagataag tttaatcgac acgggaaatc ggagaaggaa ataattcgca attttgttaa       300
     tacatttaaa ttgtaacgag atttaggatc ataacattgt gaaaaatatt ttgacgcggg       360
     tagaaacatc tcgaatcaaa aatgttatct gagcaactga tcgtgcgaaa ggaaggtcga       420
     cattcgatct cgagactcaa actagtcagg acgcgccgca cttgtaaatt ttaaataaca       480
     aaacgaccac gtatttttag aacctaataa ttagcctgca aatctttaat cttcctatac       540
     gcactgactc acattccaaa atatatatat gtacatgtat aaacttacca ctattttgta       600
     tccataagtg atatctggca tctgtttgta acggaaattt atatatacgt tttccatgag       660
     acactcgttc atttatgcaa tctttataca tgcacttacc ataaaattta tttctcatat       720
     ttgccattat ttattatgcc ttgattattt tttttctatt cgcttgactc ttcacctgac       780
     tgttcactcg actattcact taaatattca ctctcttttt ttctgctaca aacgtaaaac       840
     ttactcacag aatcactttt ctctaattca gaatgatacg tatttattgc gcgaagatat       900
     cgttggttac aaatagacat taaacaacaa aaagtaaacg aataatgcta cgaatctcgc       960
     aagcttcaat caatgatacg tgcgcgaccg taactgaacg ttgactgcag atttcgccgc      1020
     acggaaaaat gaagctctta aaaacaatct cgatacatct ttgtctgcgc gaaaagagat      1080
     aagcatatgt tcgcgcaaag aaatagtcca gcctgtcaca tttactgcga cgtttacgtt      1140
     ttattacaat ttactgcgca cagcgcagaa tgctttttag tatttaactg cgcaaagcgc      1200
     agaatacgtt ttattacaat ttaccgcgca tagcgcacga tgttttttag catttcactg      1260
     cgttaggcgc agaatacgtt ttattacaaa atgtactgca tgcaattcag aatatctctt      1320
     catgaatatg tttcagtatg tagaaagaaa ttgtgagaat taataataaa gaaattgaaa      1380
     aaggagccga tctacgagat cgcaaaatta attgaaatat cgagaagtgt gaaatagaca      1440
     attatacttg aacgatatcg gcaatgatac gctggacatt gcccttaccg atatcagcaa      1500
     ggggaagaaa accccggcgt tttttctcgt tacgatcagg aagcaagaat taccgaagcg      1560
     tttgtaaagt atgtttctga aacatctttt tgattttata gtaaaaaata aggacgttgc      1620
     aattaattaa ctgaaatttt tacctgatac ttcgattttt ataatatttg tattgagata      1680
     ttttttaaga tatatgtcac aaattgataa attgattgta tgacaaattt gataaatctc      1740
     atacttcaat tttctaatgt gagcatatta tgtttttata tttgtttaat atattacttg      1800
     tatatttcat taatgtacat tatttccttg ttgacagatt ggcaacatac cgtttcgatt      1860
     gcagctgtga attgattcgt tggttcgaat aaattccaat ctgggagatg aaatgtactt      1920
     ctcgcctgta cagcatacaa cagctattgg aatagtgagt gtcttgggtt ttttaaaata      1980
     agcattccta aaacttgcca tgataatcta aatagcaatt gatataataa tttattttta      2040
     tcccaacaaa tttttttctg catcgaacag tttgccttat tgcagctttt tttacataaa      2100
     ataccgctgc aatttatttt taagatttgc atagatatac ttgatttaag ataaagattg      2160
     actaatattg aaaaatttaa atatttatat acatatagga atacataaat tcgaaattat      2220
     atgttctttg cataaaatgg aaattaatat ttcttttata gttcctgaca aaagggttgg      2280
     ataaaatcta gatgcagcgt atgtcgcggt gtattggaag caagatatct cactacatcc      2340
     ttgtaaaact tcgtattgtt agcagaacca accttttgca agtaagttgc tatctgtacg      2400
     cgatatcacg tggctttaat caatatcata aaatatccgg gttttttttt aaacattaac      2460
     tgtggtttgc gcaaccggaa tagtaaatct ccaaatattc taaatgcaag aaaaaagata      2520
     attactttaa agaaaaatat acgtgaaata gcgtttacat aaaaaacaac gtattgataa      2580
     ttccaaagac tgtcgttaat attaaagata attaattaaa tcgagtaaca tttttgagaa      2640
     aaagttgtta gatatctaag atcctgccga gggaattatc cgtgtccctt tcggttgttg      2700
     aacatattct cgatttgttt tatattacat atctttattt aatctttatt taatttgcta      2760
     cgaatattat tgttgttata tataaaacat tgttcataat agatatacat aatagatata      2820
     tgatacagcg agggaggttc gagtcattat gcaattggaa gaaatgagac agaagatcgt      2880
     tcttctatcg ggcagccgaa gcgaagacgc taagcgcaca tgatttttct tcagtgtgcg      2940
     tggttgccaa gtttctcgcg cgtcggcatc gttggctgac cacgtgtatc gctcgatcac      3000
     ttcatcagtc gactgtcaaa tgtcgaggtg tgcgtgtctt cgcagagaga agcctttcgt      3060
     cgccaaaaat gtaagtaaat gcatcatttg ctctttcctt ttattagaat attccaaata      3120
     acacgcgtgt ctaaaaggca tcttataaag gcattctcac agaaagtgta cgagtaattt      3180
     tttcgatcta gcgaaatgga tttttgttta atacactgtg ttcggacaca ttcacgcgaa      3240
     tacatataca ttacatatat ctacatgtca ttttcttgac attgctgttg gccgttgact      3300
     tcaatttaga ttactttaat taaatttagt gctatataag agaaaggaaa aacgttttac      3360
     agacattgaa tcttttaaac atcatcaagc cgtgttatct ggaatatatt ttaagattat      3420
     attaagtcac acacacaca                                                   3439
//
ID   REP-1_PXu   repbase;    DNA;    INV; 1018 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version 1)
XX
DE   Repeat from Papilio xuthus: consensus.
XX
KW   REP-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1018
RA   Kojima K.K. and Jurka J.;
RT   "Repetitive sequences from the Asian swallowtail genome.";
RL   Direct Submission to RU (11-MAR-2013).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 1018 BP; 314 A; 155 C; 180 G; 369 T; 0 other;
     attatttttc ttgttaagga atctataggt tacacatcta tggagaatag taataacaaa        60
     agagttaata tgcggaatct ttaggttcat gataatttta taaatttatt tgagaagtaa       120
     aacttaaata ttgtattcta tttttacatt acattatatt taacatgact tttacatttg       180
     caatgttttg ataggaaaag tttggattag gggactattt ggagcgtcgg cagtgcagtt       240
     ggcgcttgac cggatcatat tttacatatc caggtacgat ctccgctata tagtaatgag       300
     ttcttcgaat ttcttgataa catccatccg acattcttac tgtaattaca aattgcatac       360
     aactgcatag aaattcaaag atatgtgtga agtcaaccaa ccctcactgg ctctgcattg       420
     ttgaataaga cctagtcgca ttcttgaggg taggctccga gctcctcagt ggagtatagt       480
     gtgtccgtat agtgagcttg atgatgacga tttgttttgc ttcaatgcat attgtcttgt       540
     tagcaatttt ctaaatattt taccaacaga gaggagctaa tctctttcca gtgttattct       600
     ttttctcaag acgagagtgg cactactact ccagttctat cagaaaatat gatctatcaa       660
     ataaacaaac tggaacaaat aagcatttat caaagttggg gtattttgtt ggtgaactaa       720
     acaataatgg tattattacg aaagcagtga gcattatgtt gcgttcttaa aatatgttcg       780
     ctttagtcag aagattaaat taaagttgca attaacgaaa ttgttttatt tttccaaatt       840
     gttttccctc gaataatact ttcaaacgtc aaaaaggaaa ctgacagata gattttttta       900
     ggttggtagc aacgtagact tgttcataat attgctagca ttgaaaatgt caatttttat       960
     tctccgtttg tgtatctaat tagtcaagag tcccgtctct tattttatat actctttg        1018
//
ID   REP-1_RPr   repbase;    DNA;    INV; 2166 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   repetitive sequences: consensus.
XX
KW   Nonautonomous; REP-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2166
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from insects.";
RL   Repbase Reports 15(10), 3504-3504 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. Termini are not determined.
XX
SQ   Sequence 2166 BP; 674 A; 473 C; 367 G; 652 T; 0 other;
     tcttaatgtt gtacactaat gtgtatttcg tcgcctggta gtacttttga agaagataat        60
     ggctgataga aacgcaattc tatgcactcg attgaattgt caaactgaca tttctcttcc       120
     aaatataaca cttccatgat gattatagaa cgtagtaacc tgcagcctga agaaatcgaa       180
     tactattgtt ggtcaacata aagaaatcct gcattttgat cggctcctca aaaaaggcgt       240
     ccctgaaccg ccattttccc tctactttgt ttgcaatatc ttgatgttgt acactaatgt       300
     gtatttcgtc gcctggtact agttttgaag aagaatatgg gtgatagaaa tgcaatttta       360
     tgtactcgat tgaattgcca aactgacatt tctcttccaa atataacact tccatgatga       420
     tgataaaacg tagtaacctg cagcttgaag aaatcgaata ctattgttag tcaacaaaaa       480
     gaaatcctgc atttcgatcg gctcctcaaa aaaagcgtcc cagaaccgcc attttccctc       540
     tactactgca ctcgattgaa ttgccaagct gacatttctc ttccaaatat aacacttcca       600
     tgatgatgat aaaacatagt aacctgcagc ctgaagaaat cgaatactat tgttggtcaa       660
     caacaagaaa tcctgcattc tgatcgtcta ctcaaaaaaa gcgtccatga accgccattt       720
     tctctctaca ttcatggttt acgagatttt atatctcgcc agtgaccaac attcaggttt       780
     gtgtgcaatt caatgcattc gccagtgacc acattcgtac ttcaatacaa aaatatttcc       840
     gtctctttcc aaacaaactt attgttgaac cagcaattga tggctataat tctaaattgc       900
     gtacattttt ctttacagca gcgataataa cggaatgcat aaattaaaac atccttctgc       960
     tgaagtgatt ttgagggcat cgctttgagg atagcacacg ccctagtttg taatatacag      1020
     atagcctgcc ttaagcgcaa ccagcctttt aagtgtacaa gctattccat ggttttttgc      1080
     tcgatctatt tgaactccac tagttcgtag catatatcat caaatagaaa tgcaaaagca      1140
     ttaatggtca tttggatgcg acaggaactg cagagccgtc tttcttttaa aaacttgcct      1200
     tccaagtaga gcaaactttg actaggtagc gtatatagat cttgatgttg tacactaatg      1260
     tgtatttcgt cgcctggtac tagttttgaa gaagataatg gctgatagaa acgcaattct      1320
     atgcactcga ttgaattgtc aaactgacat ttctcttcca aatataacac ttccatgatg      1380
     atgatagaac gtagtaacct gcagcctgaa gaaatcgaat actattgttg gtcaacaaaa      1440
     agaaatcctg cattctgatc ggctcctcaa aaaaagcgtc cctgaaccgc cattttccct      1500
     ctactactgc actcgattga attgccaaac tgacatttct cttccaaata taacacttcc      1560
     atgatgatga taaaacgtag taacctgcag cctgaagaaa tcgaatacta ttgttggtca      1620
     acaaaaagaa atcctgcatt ctgatcggct cctcaaaaaa agcgtccctg aaccgccatt      1680
     ttccctctac taatgtgtat ttcgtcgcct ggtagtactt ttgaagaaga atggctgata      1740
     gaaacgcaat tctatgcact cgattgaatt gccaaactga catttctctt ccaaatataa      1800
     cacttccatg atgattataa aacgttgtaa cctgcagcct gaagagaatc tgcattttga      1860
     tcggctcctc aaaaaaagcg tcccagaacc gccattttcc ctctagtaat gtgcatttcg      1920
     tcgcctggta gtacttttga agaagacaat ggctgataga aacgcaattc tatgcactcg      1980
     attgaattgt caaactgaca tttctcttcc aaatataaca cttccatgat gattatagaa      2040
     cgtagtaacc tgcagcctga agaaatcgaa tactattgtt ggtcaacaaa aagaaatcct      2100
     gcattttgat cggctcctca aaaaaggcgt cccagaaccg ccattttccc tctaggtgcg      2160
     ttatag                                                                 2166
//
ID   REP-2_DF    repbase;    DNA;    INV; 713 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   04-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Repeat from the Drosophila ficusphila genome: consensus.
XX
KW   Nonautonomous; REP-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-713
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1367-1367 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 713 BP; 260 A; 86 C; 86 G; 280 T; 1 other;
     gcctgctacg caggtatcgg ttgaaagggc attttcggcc cttaaattag taattactga        60
     tctaagatgc aaccttgccg aagactcagt gcaaaagtta atgttcttga aattaaataa       120
     ttagccattt atatattaaa aactaataaa tttttgtaat ttaatctcga ttaataattt       180
     aatgaactac tctttctcag tcgccgcaac aatagttggg ctatttatga atactgccaa       240
     tactacacag gcacataagc ggataaacat atatatatat atatatacat acttatatat       300
     attatatacc atctgaaagg tattgatgtg tagatcatat atatacatat atattggatc       360
     tggcttctac ggatcaaaag atatatagat tcaatcttta ttttcaattt ttaaaataaa       420
     agttatcgaa taatttttat ttttcaattt atataataaa aattgaaaat aaaagttatt       480
     gagtaatttt tatataaaaa ttgatwctta ataattatta ctaatttttt attattaaaa       540
     ttaattttaa gtattaaaaa tcaatttttt tcataaaaat tggaaaaaaa acatttatct       600
     tgtttttgaa ttcgcaatga aaagttaact tatgacaatt ttttccaatt tttttggaga       660
     ctgttttggg cttcaatttt tttaaactca taattattat ttgcggtccc tgg              713
//
ID   REP-2_DTa   repbase;    DNA;    INV; 1603 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.08, Created)
DT   08-JUL-2021 (Rel. 26.07, Last updated, Version 3)
XX
DE   Repetitive sequences from the Drosophila takahashii genome:
DE   consensus.
XX
KW   Nonautonomous; REP-2_DTa.
XX
NM   REP-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1603
RA   Kojima N.F. and Jurka J.;
RT   "Repetitive sequences from the Drosophila takahashii genome.";
RL   Repbase Reports 12(8), 1731-1731 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1603 BP; 521 A; 273 C; 264 G; 545 T; 0 other;
     tcaaataaaa acacctctta acgaggtaaa aaactagtga cgatcgcacc ttcaacgtac        60
     aaaagttctg atatcaactt ttgtgacgaa aaataatttt agatgcgact aaataagtac       120
     gctacctaaa atttactcgt tcggcccgct ttagcaaata tttaatatct acacgaatgt       180
     ttttctgttt tagcgtgccg aatgaataaa ttttaggtag cgtacttatt tagtcgcatc       240
     taaaattatt tttcgtcaca aaagttgata tcagaacttt tgtacgttga aggtgcgatc       300
     gtcactagtt ttttacctcg ttaagaggtg tttttatttg atatcagaag tttttgtttg       360
     tttacttttg ctctcatagg tgctaatata aacatttaaa tttaaattgg tcataaatca       420
     taattcttaa actattgtat tttaacgaat taagttaaaa aggcgttgaa gtatttcaaa       480
     atacctttta aacgaggtat agcacatgtc tgtaccttta gtagtgtaga acttaaaaac       540
     taacgaaatt tagccatttt tagctatttt cccgctaaag tagcggcttt ttccaaaagt       600
     cgtagaacaa aagattccta tatggaactc ttaagtgcaa atttactgat tccatgaccc       660
     taaaatacag ttcggatacc ctcccacaaa attcaatact cagggagcgt taattgttcg       720
     agctggcaaa agtggctatt ttcgtataaa aataactttt aaacgtgact ttttacagta       780
     atgtgttata taccaaaatt taaggaatct caagggctat acagtttaag gttttaaaga       840
     aaatcgttag agccgttttt gagaaaaata aaaaaagcta aaaaaaaagt tttaaaaaat       900
     tgtcttttgt tcatattttt ttaattatta catttacaca aattgcatat agaaggcgtt       960
     tatagcattt aaaaatacct ttcaaacgag atgcagcaca agtctgtagc tttagtagta      1020
     tagaagttac ggctttccga tttttagcta tttatagctg ttttcccgct aaactagcga      1080
     gtttttccaa aagtggtaga acaaaagttt tttatatcga tgtgatgaac gtcatataaa      1140
     attttcaaaa cttaaaaaac atgttttgga caagtggaca agtggacaag tggacaaaca      1200
     gaaattaatt ttcattttgg gaagaagaag aaaatcttat tttggctata acttttgaac      1260
     ggagagtcgg attttgacaa atgatccctc attcgacggg tattttcaag aggaatacaa      1320
     ctaaaacatt gcgagggggc atttatcccc accggcccca acagctccaa atttcgaaat      1380
     tttcaatttt tcactttcac cgctctctct cccaagccaa ttgattttct taaagtcttg      1440
     gtatgcaatc ctttaagttt ttgcaatacc tttcgattgg tgtattactc attacgatcg      1500
     gactatcact gccgattttc aattttgcgg ctatataata gtagtcgcct tcgcacactc      1560
     tcctggtgcg cttcgtcact acatggactg ccgtccatag tga                        1603
//
ID   REP-2_LMi   repbase;    DNA;    INV; 542 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 20.01, Created)
DT   06-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Repititive sequences from the migratory locust.
XX
KW   Nonautonomous; REP-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-542
RA   Bao W. and Jurka J.;
RT   "Repeats from the migratory locust.";
RL   Repbase Reports 15(1), 340-340 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Like REP-1_LMi, it contains long
CC   hairpin structure.
XX
SQ   Sequence 542 BP; 153 A; 108 C; 161 G; 120 T; 0 other;
     taacaacaat ggaaggtcca gtaaggaatg ttaataataa tatgtagata gggaacaact        60
     caccgtaaag acgaacgttg agccgccgac agacacaaat aaaagacaca caaacacaca       120
     cacattctaa attttcggcc gcggccttcc tcagaaagag aacactcatc cacacaatca       180
     ctcaggcaca ctcatccaca cacgtcagcc atctctggcc gcccaacaca gtctgactca       240
     cggcaagcgg aagggatggg aggggggagg gggaaggagc ggaggagggg gggaagtgga       300
     gtggagaggg aagataaggg tggggataca acaagcagag gcgatgtcat gttgggcggc       360
     cagagatggc tgacgtgtgt ggatgagtgt gcctgagtga ttgtgtggat gagtgttctc       420
     ttgaggaagg ccgcggccaa aaatttagaa ttgtgtgtgt gttttgtgtg tcttttattt       480
     gtgtctgtcg gcggctcaac gttcgtcttt acggtgagtt gttccctatc tacatattat       540
     ta                                                                      542
//
ID   REP-2_PBa   repbase;    DNA;    INV; 5161 BP.
XX
AC   .
XX
DT   11-MAY-2012 (Rel. 19.03, Created)
DT   11-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   repetitive element from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-5161
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (11-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. TSDs are uncertain. The sequence
CC   720-1589 is similar to DNA-4_PBa. The sequence 3945-4594 is
CC   similar to DNA9-2_PBa.
XX
SQ   Sequence 5161 BP; 1824 A; 697 C; 689 G; 1951 T; 0 other;
     atatatatat atatatatca atatactatt gtataattga aacaaagatc ttgattatta        60
     aaacaaaagc ataacatagt tgttgatttt tttaggatac tgttgaatca ttgatttaat       120
     taacacctct ttaatgtggc aaaatatttc tgaaatcgat agttttgtaa ttttataaca       180
     caaaaaatgt attaaaataa aaagttaaag aattaataat aaagtgttcc taaagaatgt       240
     attaatattt aatgaaaata tatccaaagt ctattttcta tctattaata aattatataa       300
     tatcttatat gttaaataaa aattttttaa ctaatttttc ttcgtattat ttcttcttaa       360
     tagtgttatt atatatcttt aacagcttga agcgtcacgg tagctaatca gcttacggtt       420
     gtccgtaaga gcgtaaaact gccacgatgc ttttcgctgc taatgacatc aatcattatc       480
     gatagttacg tacggaatat ggcctgagaa attaaatgag acaatttgtt acaaaacaga       540
     tgttctaaaa catgtaaatt ctaaacatta aattcttttt caaaaatcct tcttttcttc       600
     ttttcttcct ttctcctttt tcttattgtt gttttctttt aagtaattga gcgtaaatta       660
     attgagaaaa tttaacgaag atttaataat acatatttac agtatggaaa tttaaggact       720
     atttttattt acaatgaaaa aattatgaga ttatcctaga tcgcatttaa aaataataca       780
     aaaagttttg cggtggttta gaaacttgaa tttaaaatta cttaaatata aaataaaaat       840
     gtgtttcaat caaaatgtaa ttaagaaata atgataaaaa ttacgacttt ttttatataa       900
     atactttaag aattcaaaag atttatgtac tttcatcgtg atgcgaaaat tagttattct       960
     gctaacttaa atttttatta atctgagaat agtcacctgg gatattttct acatcccatc      1020
     gtcaaaaaaa tgaaatcaca tcacagttac ttaatgtcct tcttccgttt gtttattatc      1080
     ttggtttttc cttacttttt tcaaaaaaat gttgattaaa cttatatcca taatatcctt      1140
     agatattaat aagttataga acaatcaata attacaatag gtaatgaata acaatgactt      1200
     ttaattgggg tgtaaaaaac atcccaggtg accgtttacg caaaaaaatg aggtgactat      1260
     tctcgggtta agagtacaaa caaaagagtg gtggtacaaa ttaaataaag tttttctcta      1320
     cagaacaact aatttctgca taaaaagttt acataaaaaa tcttgaatag ttatataaaa      1380
     agaattgaga ttttcgttat tatttcttaa ttacatttcg attagagcac gcttctactt      1440
     atctatttag gtaatttttg attcaggttg taaaccttgc taaatttctt cgtattattt      1500
     tgaaatgcga ttagataaat ctataagttt ttcataatgt ttttattgtg aatgtaagaa      1560
     ttagaaaaat aaatgtaata catccttaac ggaatcaatg taccaataga tttaagtttt      1620
     tatatatttt taaataaaaa tcctgctatt ttttcctcag gatagtttaa tttttgtaaa      1680
     ataatgataa tttttaacaa tttaagagct tctcattcaa gtattcaaag tccaatgtat      1740
     attttcgctt atactaaata aaaaaaacgt aatacatcaa attgattatt ttatatgttg      1800
     tgcaacaatc tcgtcgacat tgtaattatt attaacttaa aacatagtaa acttttaatt      1860
     tatttcgaat ttttaagaaa ataacgaaat atatattatg caatcgtatt aagaaaataa      1920
     ttttatatgt attcttattt attatattgt ttataatttt tatacataaa gttatatacc      1980
     accttattgt aataaatatt atatgtaaaa tataataatc atatataagg attttcgtaa      2040
     tatcaatttc gtattatcaa ttctgcaatt cattcatatt attaatactg tttatttttt      2100
     ttcaatggat acgctatatg tcaacaatag cgagcggtaa ccgagaacgt aggagacgcc      2160
     gaacatcgta cagcgcatcg aggcgagaga gtacgatagt atctctatcc tcttctcgca      2220
     gcacgtcaag cgcgagagag tacgatagta tctctattct cctcgcgcag cgcttcgagt      2280
     gtgagagaat aggatagtag tcctattctt ttctaccgtc cgagggtagt cgaaactgac      2340
     actatgcaac gtacacggat ataggctcac ggttcagtgt atgctgacac acacattgaa      2400
     gcatgagccc atgttcgtgt actctgcacg gcgtaacgct gcgtaaacac gatggcccgc      2460
     caggctagcc gagtcaggca ttagcttcga gtggtagaaa aggatatacg atctgttctg      2520
     ttttctctct cgagcttata gcaaaactag caatatgatg ttggacctta agttgccgaa      2580
     ttgacgacgt gcgacattat tatcaatcta ttttcaaaac ttttacatat ttctgtaaaa      2640
     ttattataat atatattttg tacaaatatg taaatataaa aatccgctga atgtttattt      2700
     ttaattaatt atttaattta aagtaattac ccaagtagca agatgacgcc attatgatga      2760
     tgatttaagg tcatttttcg tcattctacg tcagtatacc aaataatgat gtaaaataaa      2820
     cataacattt gtcacgaaat attatcgtca taaatatatc ttcattattt ttaagtcatt      2880
     tttaatgaat aaatgaaata acattattat ttactatctt tcttaattaa ttataatata      2940
     taaataagaa aaatatttcc catatttaac atacaattat taacaaattc ataaacaaat      3000
     aaataaaata tatacaacaa tttataaaca atttttataa aaacaatgat tcttattaaa      3060
     aataatataa attcacggct ctatatatgt aattaaatta tctacaaaaa ttacatatgc      3120
     aatcgagatt ttaaaattga gactatttat acaacatagt aacattcatt aaccagatct      3180
     atcatatttt atgtcaagat cccatattca cttatatcat catttcagta gcaggtttca      3240
     tcccatatgc aagttaagca gcatcgagca gggtcccaag taaggatggg tgggccgttt      3300
     tagaaacatg cggcgataga agataaaaga tgtttttagc actttcactt tttttcattt      3360
     tttcattttt tttacttatt tttcgtaaaa ggtgtcacgt atattataga tttttagtac      3420
     tagcagtcaa tatcggaacg taaccgttat tttgtcgtca taagtatcac atcatcggtc      3480
     tgtcacttat agacgtcatt atgtgttcct ttttgacgtc ttttatgacg tgaatttgat      3540
     gatattaatg acttaaaata gacattatat tgacgacatc ttgctacctg ggtatttagt      3600
     taatttaatt actttattat ttagtttatt taattattat aattattact attatttaat      3660
     taatattatt taattaatta tttagttaat ttaaaagatg tcccttatat taaaacaaat      3720
     tatttctagt acttttaata atatttagat attaactaaa attatagttt ttaatatagt      3780
     ttttttattt ttctttttag aacaaatatc aacaaatact ttttcaaaca atagttttaa      3840
     caaataaatt aattatattt taataactaa gtgattcaga gttaatatac aatactatta      3900
     tagtaaatat tttagtctta ccgacaatga gaacaaaaaa aagtgtgtgt aaagctggcg      3960
     tctcattttg cggaaaaaat cgtacaaatt attgagagtt ctggcttcct ttttaatagt      4020
     tcctgatagg ttaaacaaat agtttttgca ttaaagcgaa aaaatcggtt tggacaaagt      4080
     ggacgccaga ttcacgctgc ggctcatttt gtcctaaacg agttccgacg cttgcaaacg      4140
     taagattttg aaaaatttat agttctataa gagttctata aagagttctc tcatataaaa      4200
     acaaaaaaaa ttttaaataa gttgaagtta attatcagtg caataaacaa attgagctga      4260
     aacgcaggcc aataactcag agttttgatt taacaaatat acttttcgta tagttctgaa      4320
     catattaaag gattttctaa agagttctag gcattggcgg tgatgtacga tttttaaata      4380
     aagattttta aataaagaaa aatcggccga gcgtcacatt cttagatgga aaaatatgaa      4440
     acggttgaaa tctcgaagtt ctgatttaac aaatatactt ttcgtatagt cctgaacata      4500
     ttatttaaca tgtcaaaacg ttttctaaag agttctaggc attggcgata atgtaaaaaa      4560
     atgtacgatt tttaaataaa tagatacagc ccaaatgagt attaatatga gacgctgttt      4620
     aaatgtcggc acatctgata gtccaataca cttttcgtat acttctgaat gtattctaat      4680
     gctttggtaa gaattctaat cacaaaaaat atttcgacca gcgtcttata cttttccgtt      4740
     tgtctctttg ttaattttat tttaatttat taattatacg gagttcttaa attgtattgt      4800
     ttttaagtat ttatgttttt ttcttattta atataatttt gacatttata aatataatat      4860
     ataatttata tagttatttt ttttaactta aatctatttt tattttcttg taaactatta      4920
     ttacgttatt aatttttaca ttatttgcta tgccgtacga attccttaac actaataaca      4980
     ttttgggata agaaaagcga aatgtattca ctgtgagtct aataatatct tatcgatatg      5040
     tttctcattt tgtttcctac tctggccgca acttttcgaa gagggcgtta gcgtacagtg      5100
     aatttttcct gccccgctaa ctcccgtaag atcgttggtc tttaatagta tctcgtcggt      5160
     g                                                                      5161
//
ID   REP-2_RPr   repbase;    DNA;    INV; 19157 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   repetitive sequences: consensus.
XX
KW   Nonautonomous; REP-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-19157
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from insects.";
RL   Repbase Reports 15(10), 3505-3505 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to the consensus. Termini are not determined.
XX
SQ   Sequence 19157 BP; 6674 A; 3306 C; 2842 G; 6329 T; 6 other;
     gaaaaactag tgaatattag ggactatcag ctagttttaa cagggaatag tgtgctttgt        60
     ggcagaaaca acacctattt agggcagcac taaatattac aacatgggtt gtcctttttc       120
     gtttcattca ttgcgaaaaa tgaaggaata attaaaaact atcagctagc ttggacagga       180
     aattagtgta agacggcgga atttaaatca agcacgtttc acatatattt aacatctaag       240
     catttaataa ttgaatcata aattttcttt taccgttaga ataagcacaa tacgtcttaa       300
     atatactcta tgcttaagtt gttttcattc aaacattcag atttcttaac attggttata       360
     acatttttgt cgattttaaa caaacgccaa agaaaagtct agcggatgaa aatctttacg       420
     waagtttgct gcttttcgcg atatatcttt gatcttactt gcaataaatt tttttggggg       480
     aatttccaag gatggggtgt acaatctggc tacattcagt cgaatcatag tcgaaggaga       540
     agatctgctc ttgtttaata agttgacggc atgatctccc taacggcttt acaaaccttt       600
     ggactattat catatccaaa ggctgcaaag ataccttaga aaaattgaga agatttagga       660
     actggctctg ttagcctgct cagaggagca gttgcccggg gggcaccacg tggaggtaga       720
     gctcagaatt tggcccccca aaataatacc attcttgcct ttatataaaa ccgcattcca       780
     gccagttttg acccccttat aaagcaggct tattagcaaa tgtcaatatt attattggca       840
     tccatcacct gcgaaggtaa cggggtgaaa accagtgatt ttggaatacg gttagccgcg       900
     aaaaaaattt ggcatgaatg gcggaaaata gattattcgc gttttggggg aaacaaaaga       960
     aatagaacaa gaaaaaccaa caatacaaca acaacaacaa caacaacaac aaacaactga      1020
     aaatcgaaaa acgagaggaa tgaaacaaca aaaacaactg aaacaaaacc aaccaacaaa      1080
     aacaaaatac aatataaaaa cctgaaaata catagtaaaa atacataatt tatataaata      1140
     cataatatat aaataatata aatatgaata aatatttaaa ataatcatgt agagaaagaa      1200
     agcatgctta gtaacaaaag aaacaaacct ttgctgctct acttggactt gaagttccga      1260
     agaaggatat tagtagtggc catataaatg aataattatg attccattta tttataaaat      1320
     gactagtgtc attttgtcat gcactaaata tatatcatgc actaaagagt ggctggttga      1380
     tgtgtagctg aaaaccctaa ctaaaaagca aattctaaac tttaattttg aaattacttt      1440
     aactatctaa tatgttgtat tggtccacct gaaaacccta actaaaaagc aaatctaaac      1500
     tttaattttg aaattacttt aactatctaa ttgttgttcc tttccaaagt agctggttga      1560
     tgtgtagctg aaaaccctaa ctaaaaagca aatctaaact ttaattttga attatttaac      1620
     tatctaatat attgtattgg tccacctgaa aaccctaact aaaaagcaaa ttctaaactt      1680
     taattttgaa attactttaa ctatctaatg tgttgtgtca tccttcttct tgaagttcct      1740
     aacatgccct aataaatgga atcataatta tggataaacc cgaagtattt atcgttgacg      1800
     gaaaagatag ttcgcaaata aaatttggcc aagtataaaa aaataaattt tgataaggag      1860
     attttagagt gccactcgct gtaggcgagc ctagagcgag tgacacgcta ctaatcgcgc      1920
     ccgaacgtca tcgatataac cactataatt ccccagccta cctttttttg ctgtaggttg      1980
     ggatatgtaa caatatcttg cagttacata tccatcgatg ttgcttcttc ttcttctgca      2040
     ccgcatcaga gtaacgcaaa aatataacgc aaaaaatgat agcgcattac attgcggaat      2100
     ttagaaaaat ataaataaat aaatataaaa gaaatgaaaa tgaaaaagtt gaaagcaatc      2160
     tccgataaaa acactcccgg aattttaaca ctcccggaac tttaacactc ccgagctgaa      2220
     acagagaaaa aaaaaaaaaa acagcctccc tttggaggag gcaagtggtt tttgttatgt      2280
     ctgcatgtgt ttattgcttc tgttataaag agtgcatggt attctgagct ggggtaaccg      2340
     tggggtcgct actccccagg tagctgcatg catcagctac cccttgcggc gtttattggc      2400
     aatgttaccg gaaccacaaa aaaactgccg gaaagtagta atagtcaatc gtaatttctg      2460
     gataaaagaa aaactagtcg caaatgaaga ataaatgctt tttttttatc cactatttta      2520
     ccgaagaaca aatagtaatg tttttcgacc taaggatgga agaaaatgcg aaattaatat      2580
     taaaggaagt ctattctact atttccggtc tgcaatagtt ggtttaaaac agtatagtgg      2640
     acaatatgaa cctggaaagc tggagtgaag tatgtccttt gtctattcac agctcttctg      2700
     ttggcagtcc aggttgaaat tccaggacca ggacttcagg actgtaccgg gttaaaaaaa      2760
     tataaaccat tccattaacc catctcacca aatccaccta attcagatca ctaactgaac      2820
     tctccgcttt gaaaaacaca agatacaaac aatgaaattc ctaacaagtt aaatatcaat      2880
     gaaataataa tagatttttt tttttaattt gaaaggtaat taaaattact aatgtaattt      2940
     tttgtttata acaccttcta aattatacat ttacttttaa ttgcaaattt agggtaccgg      3000
     ccgaacaata atgggtttaa ctgctagatg tttaatctta gtttgaaatg tgaaaagtct      3060
     aaaagccgtt tgataccaaa gcatcaagtc cttaaaaaat gaaataaaat agtagtaaaa      3120
     aagtgtttca ggaaatctgt tacaaaaagt gtaaaagaat tggatagaat tcagcttcgt      3180
     ctagagttaa gttcaaaaga agaaaagaga catcaattca aaaataaata gaggtaccat      3240
     ttttgtacta ctacaaacaa aacgatactc tgaacgatta ttactatcca atctaatcca      3300
     gttcctttat cccatcaaat ccagttcata tatcccatct aatccagttc atctatccca      3360
     tctaatccag ctcatctatc ccatctaatc cagttcatct atcccatcta atccagtaca      3420
     tctatcccat ctaatccatc ccatctaatc cagtacatct atcccatcca gttcatctat      3480
     cccatctaac ccagttcata tatcccattt aatccttcat ctatcctaca aatccggtac      3540
     atctatccca tctaacccaa tgcttctatc ccatctaatt aagtacatct atcccaccta      3600
     atccaataca tctatcccat ctaatccagt ttatctatac ctacataatc tctaatctct      3660
     aatcatcgta tacttcaaaa taaaatttac cagacgtgac aaatgattat tccaaattac      3720
     ttgcatcttg aatttaatat ttagcctatt aggatgcaaa tcttcagcct taaatgtgtg      3780
     cactaatcaa gctttctttg taaaaggcaa gcatgattag gttaagcaca attaggcctt      3840
     gcttttcaaa aataatgaag gtaaaattaa atgaactcaa attccaaact agaatgcatt      3900
     ttcgtaaatt atgtgactat cagaaaacca aaaatagtat atttagttat agcatattta      3960
     tagttatata tctatagtta tagtatattt ccggaacagt ttgtctgtgt gttagagagt      4020
     tttctgtttg aatgtgtaaa aattaataac gactgaattt gtaggacaat ttttgcataa      4080
     atattggacg tgatctttta tttcatattt aaaccaaaat ttattattgc taccagattg      4140
     aaacttgtat ttattctttt aaataaaaaa ctttatagaa ttttcctaat atgccttctt      4200
     attaggccgg gtctaaatga acaagaacta acgcgatcaa ttcagtacgg aacggaagat      4260
     cgcagaacgg cgtataacgg tagcatgcta ccctagaaga attacgaaac caataaagcg      4320
     actagatacg tgtaaatcga ccggcccctc ttcacgagcg acgcgctttt ctccgacgag      4380
     ctaaaagccg acgcgattta aattcgtcgt tgttttaaaa gtatcgccgc gcgcaacaaa      4440
     tcacaaagta cgcgccgtat ctcgtcgaac gatagaccca gctttaagtt tacagagatt      4500
     tctcaatttc attatctttg aattcgatct cagaaaataa gattctcaga gtcttattag      4560
     aacttacaga acggttaaat cagatcatat gtgaagtttt aagacatagt ttttctaata      4620
     gttattatta ctgttcttgc ttagtgattt ccatcccacc tttgtgaaaa acttagggtg      4680
     tataaaaggt tcatcaattc agaaccacat ttttaaagga acacagctta tgaacaagat      4740
     gatacaaagc acaattttat cttttaacga ttttcccatt tagagcttta aaaaattatc      4800
     catttatttt tactcgcaac aggagtaaca aacagctcgc gagtaaatct gtttctggag      4860
     aaaatttaat tgattttccg aatagaaaaa cctttttgag cgaactttca gcccaagaag      4920
     taaagctgat tgaaaattac catagatacg gttgctacac tattatagtt aataactatt      4980
     attctctaaa ttattccttc ctatactcga ttctagatac gaataagatt aaattcacca      5040
     agattctaat tacgattccc gttcattaat ttgcaccttt tgtactaagt gcaatacttc      5100
     atacattaaa tatagtactt aatggtggtt gtccttagat ggaaaaactt cttgtcgaat      5160
     tcaacaaaat atttgtttcc ataatcagga ctaaaataaa cagttcaaag atcaaaatac      5220
     tgagcaaatg ataaattatt ttagaaaata ttattttgaa atagtttctc ttaaattaaa      5280
     atatttgttc aattttatta acttaaacca caatagtttt tttttattta aacttgaaag      5340
     tttatttttc gtagttatat tgcaaactat actagtgccg acttctaata gcttttcgaa      5400
     gaatggcaat tcttgtagac tgactttaag attacaataa agtgatcttg attttattga      5460
     aaagtagaat aatattcaat aaaaattaat aagaaaaatg aaatttagca tcattgcaag      5520
     aagaatttgc ttataagcaa ataaagataa tataatatag cattttgaga taaaaattaa      5580
     acttaaattc agttaagttt cacgacaaat aaaacagaaa agtaaatgac agtaattaac      5640
     attaaatgaa ttttaataaa ataaattgag ctcatttcat tgacataaaa cttaaaatac      5700
     aatattaaat caataattgc attttatcaa gacgagcttt gtttgaagta agtgattata      5760
     gcttaatctt gaatgagcaa ataatggatg gattttacaa aaagtgaagg tacaagcatg      5820
     agcgatctta ttccggtaaa atgttaaatg tttggctctt tgttgtgtat tattttagat      5880
     caagtcgagt aaattctact gaatatgtcc caatgacttg tttagttttt ttgttaagaa      5940
     tttactattt ggataaattg tttaccactg ttttattgcg tagtcttgag ttcattcaga      6000
     attatagatt tatcggaagt gaaattgcgt gcccaaaagg ttattttaaa tcacaaattt      6060
     tgtgtttgaa tattctaatt tttaaatgtt gttacatctt accaacgtat actgtgaaca      6120
     attatcagaa ccttttattc aacaatcctg atcaactcaa tcgtactgct ttgatttcat      6180
     gttactaaag tcaaatataa tacatattcc ttatttctaa actcctaaca acaaacatca      6240
     ccacaatctg tcttttagct aacaatatcc ataattcact ttcttttttt taacaaaaca      6300
     tcttgagcac ctcgtatctg agatgactca gggctggctg cagtccagct tctgcagtta      6360
     cctcgataca ggtcttttgt tttgttagca gatgaaaaaa gtgatattag atttttatag      6420
     cgtagactat aatttgtgat gcttgctgtt taagttaagt taaagaaatt tctcattaag      6480
     taacatgaaa taaagaagtc caatcgtgtg aggaagttga cattctatgt cctgattgtt      6540
     ctaaaatata caaaggtcac aaataatatc tatttaaaaa tagaatatgt agtcacaaaa      6600
     tttgacttaa aaataaataa ataaaccttc tgtgaaagcc acaacttact ttccctaaaa      6660
     tcactacctt aatgaactca aaactaggat atacgtaaca aagcaatggt gaacaataac      6720
     caaacagaaa cacttacaaa acaagacaaa gacaatcatc tcagcagaat gttttaatcg      6780
     actatttccc atttaaataa tacaaaacat aaatccacac atttacagat atataatctc      6840
     tcgttgcttg cacattcctt tatcaaaaac ccgaaataca ccattattaa ttttgctcga      6900
     gtaaagatta agcaaaaatc tttacctaaa acacagttct cctctttaaa atgtaatttt      6960
     tgtaatttta atttagtatt tatagttttt acccaattta aatgaactct tttttttcaa      7020
     ttttatttta ttaaaattta tttttgttgt tgcgtcattt actttaatgt aattttgtaa      7080
     ttcaactatt ttatctcaaa acatttttac agatatatta tctcaatttc tcgcagcata      7140
     tttttctttc atgctaaata tattaattta ttgaatgtaa ataaaatatc tacttgacat      7200
     aaatataaga tcatctaatt ttaatctact gccaagtcag aagaactgac agtctgtact      7260
     tagaagtcta tagctgtgta gttcatagca ataatctcaa gtaataaact tttacgttta      7320
     aaaatacaaa aattatttta atttcaaaat aaatcattca aaaaatttat cattgcctca      7380
     gcattcactg taccgccgaa taaagtacta aataatgtac gaagtaattt aacggaaact      7440
     aaaccattag tgaaattaat caaaggcgtt ctaaattaat caagtatagg ataggaatcg      7500
     aataacgata gaaaactaat agtaatactg cagtgtatca gctggaaact atgcaatatt      7560
     ttataatcag tcttgtttga aaatttctgg caacctaaac tatggaaacc gaattctaat      7620
     catttgggca aaaatwggaa ttgaaagtgc cgctttttat tcaagaaata ctattttgta      7680
     tcaataaaac tagtgaatat aaagctgttt gttacgttta gaagcaaact aaatgcaaag      7740
     ctctaaatgt gaaatgttga gagacgaaat tattcatctc acttcactga gctggtttca      7800
     aaattgttgg accwctgata gggcctctat gtcatagaaa tgggtttatg aattgagaaa      7860
     atcgattata cactttaaat accgtagaaa tggaaacgac taaactaaga tcagtaataa      7920
     atttaatctt taagtctgga tgaaaaacaa agagataaac ccccacaaat aatctgattt      7980
     accgttctgt tagttcacgt aagtctatga acctttctac gattaaaagt atagtgaaat      8040
     taagatttct tcctgcaaat taagacggca aatagaaatt ctgtaatgtt tattatttaa      8100
     aactgaagtt tcagtctcgt aaacgatttt aaagtttggt ttattgctga aaaagatcac      8160
     atactaaata tgcaataagg cctactccac aacttagaaa ttttaacaca taaaaataga      8220
     acatctcatg caaaacaaga ccagctgatt tagatagtag taacggaact ctaactgaca      8280
     agttgaaccg attgtttttt ataataaatt tttacttagt ttgtaagaac ataagcgcaa      8340
     ggtttgaaat tttagtcagt atatgttcaa ctttttttta ttcctgtgta gccatttagt      8400
     tatttattat gtaagtttgt taaaagttct gttcaaagga aataatattg ttcaaatcag      8460
     agaatgaagg ttgcattcct aattggtcaa atataaattt aaaacttacc ccagttttgg      8520
     aataatcctt taaaatttac caatttgcca cacgtactaa agaaaacttc acttgaaact      8580
     tgttgattcg ggggtccaaa aatggcattg aaattgattg aagaagttgg cttaagaaaa      8640
     aatggatctt ctacggacgt tgttaatgat agaggcaagt tgtggtacag ccatttggat      8700
     cttgctttct tgatcacttc aaaattggta aggaagatta tggcctcgaa attaatcctc      8760
     cctgattgaa gaagtaggct tgaagatagt tggatcgtgt acggatgtta ttaatgaact      8820
     gagaaaggtt gtagtacagt catttgagtc ttgctttctt gaatcacttc aaaattggta      8880
     agaaagatta ctgctaaaaa atgaatgttc tctgagagag gaaataagct ttagaaaaga      8940
     tgaatcttga cgggatgacc ttaatttgtt gagtggggtg cggataaaca atagaataaa      9000
     atagcatgaa aaaagtgttt ctcagaaatc tgttataaaa agtgtcgaac aattggaaag      9060
     aattcagttc cgacaagagc tgagctcaaa agaaggcaaa tatatcaatt cgaaatggaa      9120
     taaaagtagc tttcttgtac tacgtcgaac aaacgatagt ctaaacgatt attacccatc      9180
     taatccagta catctatccc atctaatcca gtacatctat cccatcttat ccagtacatc      9240
     tatcccatct aatccagttc atctatccca tcttatccag ttcatctatc ccatcttatc      9300
     cagttcatct atcccatcca attcagctgt cccatcttat ccaattcatc tatcccatct      9360
     tatccaaktc agctatccca tcttgtccaa ttcatctatc ctttctacat cagttcgtct      9420
     aacccatcta ctccagtcca tctaatccag ttcatctatc ccatctaatc cagttcatct      9480
     atcccatcta atccagtaca actatccccg tcttatccaa ttcagctatc ccatcttgtc      9540
     caattcatct atcctttcta ctccagttcg tctatcccat ctaatccagt tcatctatcc      9600
     catccaattc agctatccca tctatccagt tcatctatcc catcttatcc aattcatcta      9660
     tcccatctta tccaattcat ctatcctttc tacatcagtt cgtctaaccc atctactcca      9720
     gtccatctaa tccagtcatc tatcccatct aatccagttc atctatccca tcaatccagt      9780
     ataactatcc ccgtcttatc caattcaact atcccatctt atccaattca tctatccctt      9840
     ctactcctgt tcgtctatcc catcttatcc aattcatcta tccctatcca gttcgtctat      9900
     cccatcttat ccaattcatc tatcccatct tatccaattc atctatccct tgtactcctg      9960
     ttcgtctatc ccatcttatc caattcatct atcccatcca attcatccca tcttatccaa     10020
     ttcactatcc catcttgtcc aattcatcta tcctttctac accagttcgt ctatcccatc     10080
     taatccagtt catctatccc atcttatcca attcatctat cccttgtact cgttcgccta     10140
     tcccatctta tccaattcat caatcccttg tactcctgtt agtctatccc atcttatcct     10200
     gttcatctat cccatcctaa tccagttcat ctaacccatc ttatccaatt catccgtctc     10260
     aagtaatcct gttcatcaat gcccaccgac ctaacatcta atcattatat actacaatag     10320
     aggattcacc atttaaataa gatacaatta tccctaacta cttgcagtta gatgtaattt     10380
     ttagccttct aggatgcaaa tctttagcct tgaaagtgta cattaacaaa gctcctttgc     10440
     acaagacaaa gcatgaactt taacaactga ttcttgctgc ataaaaataa taaagataga     10500
     attcaatgaa ctcaaattcc aaactagaac tcatattctt aaatcatgtg aagttcagga     10560
     aaacaaaata ctactacatt gcaacaggta gtcttgggtg tttgtggaat ttctgttcga     10620
     atgtctaaaa ttttctactg actgaaaatg tagggcaatg tttacataaa tactagtcgt     10680
     gatcttgtta tttaaaccaa agtttatgat tgctatcaga ctgaaacatg tatttagttc     10740
     tcttaaataa aaactttata gaatttttcc tatatgtctc cttgttaggc cgggtctata     10800
     agaacacgaa ctaacgcgat caattcagta mggaacggaa gatcgcagaa cggcgtataa     10860
     cggtagcatg ctaccctaga agaattacga aaccaataca gcgactaata ccgtgtaaat     10920
     cgaccgccga agagcgaaaa gccaacgcgg attattttcg tcgttttaaa ggtatcgccg     10980
     cgcgcggcaa attacaaaat acgcgccgta tctcgtcgaa cgatagaccc agctttaagt     11040
     ttacagagat ctctcaattt cattatcttt aaattcagtc tcagaaaaca agattctcaa     11100
     agtcttatga gaacttttag aacggttaaa tcagatcata tgtgaagctt taagtcttta     11160
     tttttcttaa gttattactg ttcatgattt agtgatgtcc aacccacctt taagagaaac     11220
     ctagctgaat aaaacctttc tcaattcaaa atattttcaa agtaacacag ctttagaaca     11280
     tgattgaaag cacaacttta tctctcaccg attttcccat ttagagctta aaaaaattat     11340
     ctatttatca tttctcacaa cctaaagtaa aaaacagctc gtgagtaaat gtaaatctgt     11400
     ttctggagaa aactgaattg atttcccgga aagaaaaccc ttttgaacaa atttactttt     11460
     tttaccatct tcaggactat aattaacagt tcaaagataa aaatactgaa caaatgatag     11520
     attagttttc cctaaatcaa aatatttgtc aacttaataa cttaagcagt actagttttt     11580
     atttatttaa attgtaaact gagcttattt cattgacata aaacttaaaa tacaatatta     11640
     aatcaataat tgcattttat caaggcaagc tttgtttgaa gttaagtgat tttaggttaa     11700
     tctttaatga gaattaaaga acggatatta gttagaaaaa gtgaaagatg caagcattga     11760
     gcgatcttct gctggtaaat ttaaatgttt ggctctctgt tgtgtattat tatttttatt     11820
     aagttgakta aattctgctg aaatttcaag tgacttgttt agtttttgtt aagtatttac     11880
     tatttgggta aaatgtttac cattgttcta ttgtatagtc ttgagttcat tcagaattgt     11940
     agatttatcg gaagtgaaat tgcgtgccca aaaagttatt ttaaatctca aattttgtgt     12000
     ttgaatattc taatttttaa atgttattac atcttaccaa cgtatactgt gaataataat     12060
     cagaacattt tttcaacaat cattctcagc tcagtggtac tgtttagatt tcatgttact     12120
     aaagaccaaa gtaatacaca tttctttctt caaactccta gcaacaaaca tcatcacaat     12180
     ctgtctttta gctaacaata tccataatcc actttctttt tatttaacaa aacatcttga     12240
     gcacctcgta tctgagatga ctcagggctg gctgcagtcc agcttctgca gttacctcga     12300
     tacaggtctg tagttttgtt agcagatgaa aaaagtgata ttagattttt gcagcgtaga     12360
     ctatgattgt gatgcttgtt gttttggttt agttgaagaa atttaacagg taacatgaaa     12420
     taaaaaagtc ccaattgagt gagaaagtta agattgtatg tcctgattgt tcttctaaaa     12480
     tatacagcgg tcacacatag tgtgtattta aaaatagaat atgtagtcac aaaatttgat     12540
     gttaaaataa ataaaccttt tgtgaaaacc acaattttac tttccccaag taatgaactc     12600
     aaaactacac aggtgatgta cagaacaatg gtgaacaata accaaacaga aacacaagac     12660
     aaaacaaaga cacttgaacg tctcagctga ttttttcttc aacaatttcc catttaaata     12720
     atacaaaaca tacatccaca catttacatt tatataatct cttgttgctt gcacattcct     12780
     ttttcaaata cccaaaatat ccatttttaa ttctgctctt gtaaagatta aaccaaaacc     12840
     tttacctcaa acacagttct cctctctaaa atgtaatttg ttatttaaat attgtactta     12900
     cagtttttac ataagtaaat aaactacttt attctattaa aatttatttt tgttgttgcg     12960
     gccttcagtt tactggttat agtttaatgt aattttgtaa tttaactaca ttattttatc     13020
     tcaaagtatt tttatatatt atctgaattt tagcagcata tttttctttc atgctaaata     13080
     tattaattta ttgaataaaa tatccacttg actaaatata agatcattta atttttctaa     13140
     tgccaagtca gaagaactgc aatctgtatt tagaagtcta cagctgagca gttattgcaa     13200
     ttatctcaag taatgaactt taagtttaaa taagttgttt aagttaataa gttgataaaa     13260
     attaatttaa tttcaaaaaa tctatcattg cctcagcatt cacggtatgt tgaataagta     13320
     ataaggaact ctgaatcaaa tggaatcaaa taaagctgaa aactaatagt aatagattta     13380
     gtaattttac atattaggat tagaaacaga ataattcaat caaattttct aaaaacagat     13440
     gttaaattac tcgcgagctg tttgttacgt ttagaagcga ttagagtaaa gctctaaatg     13500
     tgcaatgttg agagatgaaa tggtcatctg actctattga gttgttttca aattgttgga     13560
     cctccggtag agcccatttc tatgtcatag aaggggttta tgaattgaga aagtcgatta     13620
     taaactttag tttctcccaa caccgtgcag gtggaaacga ctaaactaag aacagtaata     13680
     aaccttactc gataaaaaac gaagaattaa acttcacata tttatacgat ttaccgttct     13740
     gttagttcac gtaagtctat gaacctttct acgattaaaa atataatgaa attaagattt     13800
     cttcctccaa cttaagatga caaatagaaa ttctgtaatg tttattattt acaactgaag     13860
     tttcagtctg taaacaattt taaagtttgg tatattgcta aaaaaagatc acgtactatt     13920
     tatgcaataa ggcctactca gaacttagaa atttaaacaa attcaaaaag aacatccaat     13980
     ggaaaacaag accagctgac ttagacatag caacggaact gacaagttga aagattctct     14040
     tttttataca ttatatatgc agttgttaga atatgtacgt acaagttaac tctttgttat     14100
     tcctatatag tcattttgtc atttaagtaa gttcgttaaa tgtttagtct ttttttgcag     14160
     agaaaacaat atttctcaaa tcccagggtg aaggttgtct tcctttctac gaacataaag     14220
     cttactacga agtttcagaa tactcgatta aaaattaaca atttgccact accacacata     14280
     gaacaaggaa acttgacttg gaacttgttg attggggggg ttcaaaaaat tgaattgaaa     14340
     ttgattgaag aagtagactt gaaaatggtt ggatcttgta cggatgttgt ttatgagctg     14400
     aggcaagttg tagagcggtc atttgaatct tgctttcttg atctcttcaa tatttgcatc     14460
     gaagttgaaa tgaatcgtct cagattgaag aagtagactt gagaaaagtt ggatctggta     14520
     cggatgttgt ttaggagctg aggcaagttg tggagcggtc atttgaatct tgctttcttg     14580
     atctcttcaa tatttgcatc gaagttgaaa tgaatcgtct cagattgaag aagtaggctt     14640
     gagaaaagtt ggatctggta cggatgttgt ttaggagctg aggcaagttg tagagcggtc     14700
     atttgaatct tgctttcttg atctcttcaa tgtttgcatc gaagttgaaa tgaatcgtct     14760
     ctgattgaag aagtagactt gagaaaagtt ggatctggta cggatgttgt ttaggagctg     14820
     aggcaagttg tggagcggtc atttgaatct tgctttcttg atctcttcaa agtttgcatc     14880
     gaagttgaaa tgaatcgtct cagattgaag aagtaggctt gagaaaagtt ggatctggta     14940
     cggatgttgt ttaggagctg aggcaagttg tggagcggtc atttgaatct tgctttcttg     15000
     atctcttcaa tatttgcatc gaagttgaaa tgaatcgtct cagattgaag aagtaggctt     15060
     gagaaaagtt ggatctggta cggatgttgt ttaggagctg aggcaagttg tggagcggtc     15120
     atttgaatct tgctttcttg atctcttcaa tatttgcatc gaagttgaaa tgaatcgtct     15180
     cagattgaag aagtagactt gagaaaagtt ggatctggta cggatgttgt ttaggagctg     15240
     aggcaagttg tggagcggtc atttgaatct tgctttcttg atctcttcaa tatttgcatc     15300
     gaagttgaaa tgaatcgtct cagattgaag aagtagactt gagaaaagtt ggatctggta     15360
     cggatgttgt ttatgagttg aggcaagttg tggagcggtc atttgaatct tgctttcttg     15420
     atctcttcgt aattggtaac gaagattatc gcgtcgaaat taatcttcac tgattgaaga     15480
     tagtagactt gagaaaagtt ggatctggta cggatgtacc ttaatttgtt gagtgtggag     15540
     aggataattt ttgcgacatg atatttgatt ataacaagga ttgcaaaaaa gaagcatagg     15600
     aatactttga aaacgatgga aatcactgcc atactacttc ttgatgaagc gttatggacg     15660
     aactaactgg agtttatgaa gaagcaggaa aaccacagtt gccttactat gtatgccttg     15720
     ttttggattt ttacagctgg aatcgcacta aaatccttgg atcgcaataa ataactaatc     15780
     tacaccttcc catagattaa agagaaacac tagtttaaaa tattatttta tcgcaacttt     15840
     acgttggcaa gatttattat tatcgaagtt tttagaccaa tattcaaact atgaaaaaca     15900
     acaaacacct aaaacctata tcatttcaac atgtgcccta aatttactgg aatttaatgt     15960
     acaatttgaa aagcattaat tattaaaaaa aatactttaa taactttcct tcctttatat     16020
     ttttaaatat tctatttgca atatagtgat attaacaaat gttactaatt tcaatggatg     16080
     tgtatgcagc atagaaatgc tcaacaaatt tcaatgaaat cctctgaact tctcaaaaaa     16140
     gaatcctgac acaatctgca caacggttcc gagaaaataa gcccctcctt gtacaaatga     16200
     ctatgcccta tgtgtactgt gtaaatgtat tggggtgtaa cagtatatat tgctcatgtt     16260
     catgttgtta ggctgggata cccgcaggga cgccaagttc cctgaagaag tggctaatcc     16320
     acttccccct acggggatcg gattaggaac tggcaaagaa ctcttttctc ccactgaaaa     16380
     tattttgtca gaaaccaact ttgcaataat ttagaaaaaa aaagtcgcat tatcacaaag     16440
     aagctgttaa aatcgccaaa aacactaaag ttattcaatg atcttcgacc aatacacgtg     16500
     acatgctgcc agaagacact actgacatcc ttttaactcg gcacttaata ctatttcgta     16560
     taatccttac acaccacgga aaataccact acgttaaaca gtgagtttta taacagccac     16620
     gcgaaaaaag aaagagttac aactaaaaat caaattaaat cttaaaatga atttatattg     16680
     gaatgcagtg ttgttttgtg taatgttgtc acactgtgtg attgttgatt tggtgtcagt     16740
     gtatgagtgt tgtttgtgta aaacaactaa agcctgggaa cctgaaaacc ctaactaaaa     16800
     aacaaattct aaactttaat tttgtaataa ctttaattat ctaactaata tattgtattt     16860
     atccacctga aaaccctaac taaaaagcaa attctaaact ttaattttga aattacttta     16920
     aatatctaac taaaatattg tatttgttac ctgaaaaccc taactaaaaa gcaaactcta     16980
     aactttaatt ttgaaatatt taactgtcta actaatatat tgtatttgtc cacctgaaaa     17040
     ccctaactaa aaagcaaatt ccaaacttta attttgaaat tactttaact gtctaactaa     17100
     tatattgtat ttgtccacct gaaaacccta actaaaaagc aaattctaaa ctttaatttt     17160
     gaaattactt taactgtcta actaatatat tgtatttgtc cacctgaaaa gccctaacta     17220
     aaaagcaaat tctaaacttc aattttgaaa tgactttaaa aatctatcta aaaatatttt     17280
     ctgctgtaaa tagaaaaata atcatgcaaa gaaagcgaag atgcttagta acatgcagaa     17340
     ttgacttacc cctctgctct acttggactt gaagttccga agaaggatat tagtagtggc     17400
     catataaatg aataattatg attctattta tttataaaat gactagtgtc attttgtcat     17460
     gcactaaata tgtatcatgc actaaagagt ggctggttga tgtgtagctg aaaaccctaa     17520
     ctaaaaagca aaatctaaac tttaattttg aaattacttt aactatctaa tatgttgtat     17580
     tggtccacct gaaaacccta actaaaaagc aaaatctaaa ctttaatttt gaaattactt     17640
     taactatcta atatgttgtt cctttccaaa gtagctggtt gatgtgtagc tgaaaaccct     17700
     aactaaaaag caaattctaa actttaattt tgaattactt taactatcta atatattgta     17760
     ttggtccacc tgaaaaccct aactaaaaag caaattctaa actttaattt tgaaattact     17820
     ttaactatct aatatgttgt gtcatccttc ttcttgaagt tcctaacatg ccctaataaa     17880
     tggaatcata attatggata aactcgaagt atttatcgtt gacggaaaag atagttcgca     17940
     aataaaattt ggccaagtat aaaaaaataa attttgataa ggagatttta gagtgccact     18000
     cgctgtaggc gagcctagag cgagtgacac gctactaatc gcgcccgaac gtcatcgata     18060
     taaccactat aattccccag tctacctttt tttgctgtag gttgggatat gtaacaatat     18120
     cttgcagtta catatccatc gatgtagtcc tttgcgtctt cgtcttggcg gagggggaag     18180
     agcaggagtc ctcgtcaatc gtcaattggc actggacact tgacactagt taaaaatata     18240
     tcgcacacaa atacttcgca ggctttactt tagcggaatt tggaagaacc cgaagcaatt     18300
     acttttaaat acgcacaggt taaaatatca atgataatag ttaataaaag gtaaaaaaag     18360
     ttccgaagca atcactcccg gggattttaa cacgaactcg gttcctgtaa caataaggaa     18420
     aaaagataag tacatatata acttaaatga acacattttt ttgaactaaa ttttgaccaa     18480
     aatattcaaa taataaaact cattcttgtt cgtaaattca taaaatactt ttgaaacaat     18540
     ttacaggcat ctgtattaat ttgtttcttc agctaaaagg accaataggc ccaaaattaa     18600
     tttagaaaag tttaattcaa acctcatcaa aacgttcata ctagttgaca taaaaatgta     18660
     tttatattcc agtcatttag taaaagagtt taaaacttat ctgtacagct taatttttca     18720
     ccgaagtcaa aaaaattgga cttagtctga attcattctt actaattgta gtggtataaa     18780
     tcattcaaaa atcaacatta tttaaattaa ttaatgctaa aaatttaaaa aaagtaattt     18840
     tcagttaata cctagcacaa attcattaaa tacctaccta tacctcaatt catcaactac     18900
     ctaatgtctt aaagttcacc tatttactta aattttttta aaaaaagttg aattacaaat     18960
     ttactcaacc ttattgaaga tagttttatt caacaaaatc tacttttacc atgcattcaa     19020
     ttgaatgtga gttcagacat gtctgaactg gtcaattcta tttcttctta atttctttaa     19080
     attaaattat gaaaaccata aatatttatg tattcttctt tctttctaat acactattaa     19140
     taaatataaa aagttga                                                    19157
//
ID   REP-3_LMi   repbase;    DNA;    INV; 1500 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 20.01, Created)
DT   13-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Repititive sequences from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; REP-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1500
RA   Bao W. and Jurka J.;
RT   "Repeats from the migratory locust.";
RL   Repbase Reports 15(1), 341-341 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Hairpin structure at the 3'-end.
XX
SQ   Sequence 1500 BP; 483 A; 239 C; 243 G; 535 T; 0 other;
     tttaaccgac ttcaaaaaag gaggaggttc tcaattcgac tgtatttttt tatgtttgtt        60
     acctcagaac cttcgactgt gtgaaccgat tttgatgatt ctttttttat ttgaaagctg       120
     gtgcttcccg tgtggtccca tttcaatttg gtccagttct gacaatggca tccataagaa       180
     aaccatataa gtcttaaatt tgcattaagt atgtgcgcga caaatggacg aataactcaa       240
     tatcacgcca accgatttcg atgattcttt ttttattgga aaggatgtac ttcaagggta       300
     gtttgatgag agtttggtta ggttctgatt atgggatcca tgacaaagta acggaactct       360
     tcaattctta ggagcaaatt aacgatactc ggccgaatct tttataggct atccggatat       420
     ttgagtcacc taccgtaacg tcgttatggt caagtaattc cctgttcaaa acttttttca       480
     tgtaaagccg cattttttga aagtctattt ttgcgctctt cgcaagtctc ttttgaaatt       540
     gtcctcgagg tagatttcct ctgttgagat aggcgtttct ccctgacttc gtttgtttca       600
     tttaaacggc gctgtctcat atgagcagca cgtttagtag gtctacccat attcagaaaa       660
     attagttagt gtacttcaga ttcactaaaa atcaaaaaaa aaaattttaa caaaaaaacc       720
     gacttaaaaa aaaactattc caaaacaaat taatatgcac taaaaagtaa aaaaaaattg       780
     cgtattcttc tacaacttaa taatcaactt actttttcta ctcatcaata tgtaggtacg       840
     atctatgtgt ttaccacgca agaagatagg taggtaccta cccactttaa atctaactca       900
     acacatacct atgaataaca aacaatgatc aaaatatttt ttagagttct cctaagtaaa       960
     atgaaatgaa aaatattaga ctacttaaaa gtcaatcaag ttattacgat aatataatgt      1020
     agttacaatt attgttattt ttggagtcgg tgtcagccaa ggaaacacta caatatacct      1080
     agcaaaaata atacgagaat attgagaccg aagtcggatc ggatgtttcc ttggctgaca      1140
     ccgactccaa aaataacaat aattgtaact acattatatt atcgtaataa cttgattgac      1200
     ttttaagtag tctaatattt ttcatttcat tttacttagg agaactctaa aaatattttg      1260
     atcattgttt gttattcata ggtatgtgtt gagttagatt taaagtgggt aggtacctac      1320
     ctatcttctt gcgtggtaaa cacatagatc gtacctacat attgatgagt agaaaaagta      1380
     agttgattat taagttgtag aagaatacgc aattattttt ttacttttta gtgcatatta      1440
     atttgttttg gaatagtttt tttttttaag tctttttttt tgttaaaatt tttgtttatt      1500
//
ID   REP-3_PBa   repbase;    DNA;    INV; 523 BP.
XX
AC   .
XX
DT   17-MAY-2012 (Rel. 19.03, Created)
DT   17-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   repetitive element from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-3_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-523
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (17-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   ~86% identical to consensus. Termini are not determined.
XX
SQ   Sequence 523 BP; 217 A; 53 C; 39 G; 214 T; 0 other;
     caggattgga tagaagtaac tagttaaaaa gttaaaagtt aataactttt aacttaactt        60
     agttaatttt aaatgaatta atttataact tcaactagtt atttttaaaa cacataaact       120
     ttaacttatt aacttttttc taagttaaaa atttacctat gtagaagaaa aaattgtaaa       180
     agaaaaaaaa aacgcattcc catataaaaa aaacaatatt tctttgttat ttcatataaa       240
     cttaatttac aaataaaata ttaaatttat ttgatgatcc atattgtaat tgttttgtta       300
     tttagaatat tttaatttta aaaaattacg acattctaat ttaatataaa taatgctttt       360
     taaaattaac ttttaattta acttaagtta atttaatttt aacgcaactt ttaactgagt       420
     tagttttttg ttcatgtaac ttttaacgta actaaattaa ttttataagc cattaacttt       480
     aacttaattt agttaaaaaa taatattaac ttacccaacc ctg                         523
//
ID   REP-4_CQ    repbase;    DNA;    INV; 1710 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   Repetitive element; nonautonomous; REP-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1710
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 607-607 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. No TIRs.
XX
SQ   Sequence 1710 BP; 458 A; 344 C; 309 G; 599 T; 0 other;
     tttttgcctt tcttactaaa gaaaggtata ggttttactt taagccagga cgtcatttcc        60
     atcttcgtaa atatgtcgat tcagcatgaa ttttaatcgg aaaaatcgtc aaaaaatcac       120
     actgcatcga ttttcgacgc tctatcgatt caccttgaca gaactcgtct atctccaacc       180
     ctcgaatttt gagaaaataa attccgtgga ggtcgagtga tgttcgtatg tggtaaaatt       240
     ttgctaaatt ttgtgtcgcg ccgttctcag ctcccatata tccgatttcg attcttctaa       300
     atgcagatga aagctagtgt gctgaacctg ggcgagttgc cgcgcaaatt tcgaaatatc       360
     catctgtttt cggatgcggc cagacttttc aacaaaatac acagttttca aatgaaaata       420
     tggtcaattt ttttcatttt catatctttt atttatctca aaaattgcat ttttcgagct       480
     ctacaacctc ccaaattttc atccagatcc ataatctggt tctggagtta gagccgtttg       540
     attaacctac caaaagaaaa aaaatcccta aaaaaaggta aaagcccacc tggtgacctt       600
     cgccaacatt tttcatttct gattttattc aaaatttctt gctacattca tagtacagac       660
     catgagtgag catctgaaac aaattcgaca tcgatcggca atcccgatca atttttagaa       720
     cgatttactt tttgcctttc ttactaaaga aaggtatagg ttttacttta agccaggacg       780
     tcatttccat cttcgtaaat atgtcgattc agcatgaatt ttaatcggaa aaatcgtcaa       840
     aaaatcacac tgcatcgatt ttcgacgctt cgtcgccaag tcgacaagtt gtcaagttga       900
     gcttcgaata ctggcgcgag aatgctggcg catatatttg ctggctcgac ttatactcgt       960
     ttgtagtagc ttgtctaccg atgtttccta caacatgtaa gatatcgtag cttttcggtt      1020
     tcttttgccc tgtttgtttt tgcataactg tccaatgttt atttaaaaac ttttgtgaca      1080
     taggacattc atccggctac aatctatttg ttttccgtgg gctccgaaaa tcgcctaaaa      1140
     gtagactcaa ttttttcgtg atttcgtaag tttatttaac agggttcatt ggattccaat      1200
     aggagctttc taagcttttc atcgtttata tcgttttcaa agttttcaat gctggcgacg      1260
     ccaatggctt tctacctaag gtactcgtga ttgagtgtgt agtggtgcgg ttgtaaaaat      1320
     agctatctct gactctgtca cattcgtaga agctgaatgg ctatcttccc tgcaccgtgc      1380
     ggcacacgcg gttcacttat acctcgggtt ttctttgcgc ctaccgcggt gtgcgttgtc      1440
     actggcgcat gtgaagcttg ctatgctcgc gtttgtcata aacgcttgtt tgattaagaa      1500
     tatgtacgat taaaaatatt cttttggtga aaatggcgtt ttttgtttct tttggaaatc      1560
     atatcattta taatactttg ctttcatcat aagactttct tcttcttcta aacaaagtca      1620
     atgttatgaa ttgaaagaag ttctaccatc gttatattct ttagtaagaa aggctctatc      1680
     tcaccccagg tgggattaaa tcgggttttt                                       1710
//
ID   REP-4_LMi   repbase;    DNA;    INV; 567 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Repititive sequences from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; REP-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-567
RA   Bao W. and Jurka J.;
RT   "Repeats from the migratory locust.";
RL   Repbase Reports 15(1), 338-338 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Hairpin structure at the 3'-end.
XX
SQ   Sequence 567 BP; 141 A; 141 C; 154 G; 131 T; 0 other;
     tttattatta tgtctgttcc aagggaacag acgttggcgg tgatccgcag cagagataaa        60
     tatatccacg tatatacttc gcaaatcgcg aaatttcccg acgtctgctg ctcctgtaag       120
     atggacaaac gatctgcaac acatgaaaat ttgtgccgga ccgggactcg aacccgggtc       180
     tcccgctttt cgcgagcggt cgccttaacc actcggccac ccgtcacgct ccccggcaga       240
     caaacttcca tgtgttgaca taataataaa cataacgcca tgacaagctt acggtggtag       300
     aattgtgtct ctccctcttg cgggactcac actataacgt gtgcgagcat gtgagggaaa       360
     gaggcaagtg caacacatgg aagtttgggt ctggccgggg agcgtgcacg ggtggccgag       420
     tggttaaggc gaccgctcgc gaaaagcggg agacccgggt tcgagtcccg gtccggcaca       480
     aattttcatg tgttgcagat cgtttgtcca tcttacagga gcagcagacg tcgggaaatt       540
     tcgcgatttg cgaagtatat acatgga                                           567
//
ID   REP-4_PBa   repbase;    DNA;    INV; 2757 BP.
XX
AC   .
XX
DT   23-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   repetitive element from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-4_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-2757
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (23-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   ~86% identical to consensus. Termini are not determined.
XX
SQ   Sequence 2757 BP; 874 A; 501 C; 486 G; 896 T; 0 other;
     ttaaggggat cctaaagcga aggacgaact ccgacggccg tccgttaatg ccatctaaac        60
     ggaattaaag aaatgtcggt aacgatcgac aatttaaaaa gtcgatatta tcgacaattt       120
     aaaaagtcta tattatcgac atgactaatt ccgtttactc atattaattt ttaccttatc       180
     attttactaa ataaatgaaa acacatgtat atattgtata catgtattgt caatgcagta       240
     gtcattcttc acgacgttcg ctatgtccaa tatccttata ggccaggata cgaaggacac       300
     tacatgtatt tttctcaaag agaacatgta tatattgcac atacgtagtg aagcgactct       360
     ttgctataga aagacatgga actatttgta ctattgctat tgactagttg tctacgatat       420
     ctagtacaaa catgtatata attttattag attttgcgat aacattgcat attcttccac       480
     acacacacac acacacacgc acgcgcgcgc acacgcacac gcacacgcac acgcacacac       540
     acacgcacac acacacacac gcacacacac acacacacac acgtgtgcgt gtgcgtgtgt       600
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtatctct       660
     ccaattgttt acaaataatg catttgtaat aatcggtatc gtccgggcat acatttttgc       720
     cagtaacgtc aaacagacgc ttctgattat aatttttatc agtaccgtcc aaatagacgc       780
     ttctgatttt tattattcga atcatactgt aatatgaaat atagaatgga cttcttcatt       840
     ctcatgagaa tgcaattgat aatttttttc ttgtctctct gattgtttac aaataattta       900
     tttgtaataa ccagtactgt cagaactgac gcttctggca ttcattttat tttgcaagta       960
     ccgtcagaac agacgtttct gattataatt tttatcagta ccgtccaaat agacgcttct      1020
     gacattgacg aaacactttt caccattgca ctaattataa gaatataatt gtggataaaa      1080
     tagttatgaa aagagcgctt tcttccgagc acgtaacttc gtgtcacgct ctgtctcgat      1140
     tctaattgtt ttgaccatac cgcggcgggt tcacgtgtgc gaggcacgca cacaaaagac      1200
     gagacacgta catgtgcgct cggcgctcgg caacgttggg ttggccgaag agaatagaaa      1260
     tatcatccta ctctctcgca ccgaagcgcc gtgagtagag aataggaata tcgttgtact      1320
     ctctcgcgct cgcgacgcgt atgagaagga aatagaaata ttatcgtact ctttcgcgca      1380
     gtatgcgccg tgcgatggtc cagcgtcttt tgattatcgt tcattattgc taacgtagta      1440
     tagcgaatga attgaaaaga ataaacagac attaacaatg catgaagaga aacgaaaatc      1500
     gttatatata atcgtatata attttatgta taaaaattat aattgtgtaa taaataagaa      1560
     tgtgtatgaa attattttct cagtataaat gtataatata tgtttcgaaa atctttaaga      1620
     aattcacagt tttgagtaat tacttacaaa ttcgacaaga catttattga acgataaatg      1680
     aaataatcaa attatattat ttcttctttc tctctccttt ttatttgata taagcaaaaa      1740
     tatgcgtaac ttgttgaatt tgtaattaat tatctgaaat ataaattttc catttctaag      1800
     agtcggaata tatacaataa gattgtaata agaaaataat ttcgtactta ttctcactca      1860
     tttattagac tcttcagtta ttataatctt ataaaattat ataacaggtc attatgagta      1920
     tgacaagtaa agcatataac aatttttgaa tttcttcata cattattttc atatctgctt      1980
     actcttttta attcatacta tatatatcaa caataacgag cggtgaccag gtaacgtcgg      2040
     agacgctcga cgaccgcacg gtgcatggag cgcgaaagag tacgataata tttctatttc      2100
     cttctcatac gcgtcgagag cgcgagagag tacaacgata ttcctattct ttactcacag      2160
     cgcatcggtg cgagagagta ggatgatttc tgttctcttc tgccaaccca atgttgccga      2220
     gcgccgagcg cacatgtacg tgcctcgtct tgcgtgtgta tgcctctgca gcggccgatt      2280
     tcgagaaata aatttatccg aaataaattt gatgtgcgat agtaaacaag agaatgaatt      2340
     atgtaataaa ttgtgtatgt aataatgcaa taaagtatag tccttttcgc aaatgtctgt      2400
     atacgcacgt tttgttaact atttcaatcg tgtatacaac agaaatatca gaatcgaaac      2460
     gatgatcaac ggagttctgc attggtagag tggcaatgtg tcagacttgc catgcgaaga      2520
     gcccgggttc gatcccagcc actctccgtt aggagatgct atctactcct tctttttttt      2580
     ttatctttct tacaacatga aatatacgac tgataaattt aattagaata aaaaattttt      2640
     aataacattt tatttgcaaa ataaaaacgt tatgacgctg tatatttatg aatttttatc      2700
     atgatacggg tgtatcttta aaaatatgaa caatttatat ataattggac gttacaa         2757
//
ID   REP-5_LMi   repbase;    DNA;    INV; 1982 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 20.01, Created)
DT   02-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Repititive sequences from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; REP-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1982
RA   Bao W. and Jurka J.;
RT   "Repeats from the migratory locust.";
RL   Repbase Reports 15(1), 342-342 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. TIR appears. TSD is unknown.
XX
SQ   Sequence 1982 BP; 626 A; 372 C; 358 G; 626 T; 0 other;
     ttatcgttag ggagagctcg gtgcgaaata gcgagaacca ataggattgc agaacactgt        60
     actggtatat ctttgactcg atgcagcaga cgccgttgtt cattctggca tatgttaact       120
     gttttgtgtt aaggttgcac agtgccattt caaagcgaca gtgcactgac aatgtatcac       180
     aaggagatgt gccttattat tacatatcaa actgtaatgc agcaataaga tgttctaata       240
     aattcaatga taaagtgttg aaatacccat cgtcagtgtg gtgtaatgga tagcgtcata       300
     gattcccatt acaagggatc caagttcgcg tccgcacact tccttttatt tttttaaaat       360
     cttttattta aacacattct aggaattgct tattaatgta aggcaagtat gatttgcaat       420
     gttctacatt atttatattt ccgtgtgatt agaaaatgaa ggacgcaaat atttcgccgt       480
     ttatttccca atatatgata atttcacagt gtgcacttag gcaggaaccc aataggacag       540
     cttcatgagc agcaaaaata ttaatattct tccttatcac atatatttgg ctgtctgctt       600
     ccgaaatgct atcagagtgc accctagata ctattgcaga gatttattga aacagctggc       660
     aatcttcacc aagtcatgct agtacatttt tttacttatg tgctctctga actataatca       720
     tactgttcac aaaactaaga gtgcatgtga acttgatgat acaagaagta aacacgatct       780
     tcaaatatag gcctttatta aaaattctag caggagacaa taaggaacac ggtaaattat       840
     tcaagcagaa aagtatagaa taaacttaca gtttatgtta catcagtcac tggggatatg       900
     gctaaattca aaaagcaact aacgcctcgt cttctagata tctattcttt ataggaattg       960
     tttaataatc tgtattactt cgtgtttaat tttaagcttc actataagaa ctgactatgt      1020
     cactctcatg gatatatcac ttgttggctg tatacttttt ctgcgaatta gaacgtaagc      1080
     tttatggtaa aagtttacgt atggtagagg cgtagtgtgc tgatgttggc aaccaccatt      1140
     acatgttctc tgaaaaaacc caatcacatc gaatgagcgg aataatcttt tgtgttggac      1200
     gtgagataag taattaatgc tgttcctgct ctatgactga caggttcttg tatgtaccct      1260
     tgtctggtta gtaaattaat tatcatcgta aagcgaaaat ttcgttgcca acattagcac      1320
     actaagccct tgcagcccat aagtaaagtg taaccctttt catgcatctg tttacaaaca      1380
     atttagacag taagcctcat gacatttaca tatgattatt attgcaataa tatgacacat      1440
     tctacatcct agcgatacac tcctgtcaag gtttcatgga cctcgaaaat aaataaaata      1500
     aatctggtca ggcagggaat tatgagggca gcttaaattg ctccgagagc agcaataaaa      1560
     ttcatattcc cctgcctgac cacactctcg gaaatcgtca catatctgga aagagacaca      1620
     aatatttgtg ataaggaaga acatgaattt tacttctata cgtttcactc gaagctattt      1680
     aagcttactt tcctacctga gcatatactc atgaatggca acatactgcg aaataaacag      1740
     cagaatattt gggacaagtg agagttttta tttcatcctt cgttctgtaa tcagacggaa      1800
     atgtaaataa catcgaatgt tgcagaatat actcgcatta cattcataag aaagaggcag      1860
     aatgcgttca aactgccgca tcgaggcaat gtttacacca gtatgcaatt ctattggctc      1920
     tcgctatctt gcgatgctat tggttattct catttcgcac cgagctctcc ctaacgtcaa      1980
     gt                                                                     1982
//
ID   REP-6B_PBa  repbase;    DNA;    INV; 616 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   23-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Repetitive sequences from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-6B_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-616
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (23-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. It includes a tRNA-Thr-GGT gene at
CC   457-528.
XX
SQ   Sequence 616 BP; 139 A; 137 C; 167 G; 173 T; 0 other;
     cgggggctcg agccatgctt gatgcaatct ctcctgccgc cctgcagggg gacccattgt        60
     tctctcttcg cctgtttgaa aaaatgcggc ttcgccgcgc ttcactcaga gggaataatt       120
     ggtttttccg gctctacttt gcaacgagag aaaccgtgta gcttcgatga cgttggcgac       180
     tgagaagtga tgggatcgaa caagcgtaag cggtggagca ctggcgcacc aggaggatta       240
     tttgtatatt tgccaatggc gttggagggt gtcgccgctg cggtccgacc tgcatccatc       300
     gagtgagaga ccaacatcgc tctggagtac cggtcgtggg gattcgaaag aatacatgta       360
     tatatgtata ttgtaatata cgtatatata tgtatgtatc attgtattgt tgacgtgtta       420
     ttctaaatac gttatttgcg ataaatatca tcacatgcct cggtagtcga aaggataaga       480
     tgcctgcccg gtaagcagga gatccaggtt cgattcctgg ctgaggtggt attttttcgc       540
     aaaataatta cgagttttca cgactggttc gtggtcgggc cccgccgtga cgcacaccct       600
     cccttcttat ttgggc                                                       616
//
ID   REP-6_CQ    repbase;    DNA;    INV; 748 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   Repetitive element; nonautonomous; REP-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-748
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 609-609 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity. No TIRs.
XX
SQ   Sequence 748 BP; 239 A; 145 C; 139 G; 225 T; 0 other;
     aaaaaacgtt acttaatcca cctttaggtg gttggtgcct tcctctcatt tatagagtga        60
     ttccaacccc cctaaagtgt ccacatggtt tatggatctc ccctaacgtg atcgcagcac       120
     ctaagaggtc ctaataaaaa taagtgatga gtaaaaaaaa cagactacct acagactttt       180
     tgtcaagatt atacagacac cgcctttgag gaaaatggca tccctctaca cggctttttc       240
     gtggcgatca gacccgacca tttgaggtta tgtaaattca gaccattttt taaactgctt       300
     gtaattttag ataggtaagt cagatcttga aaattcttaa tccacaagaa aggtcatttc       360
     agaacctttc taaaaatata taatatggca ggttttcatg caaaaaccac ccttttttgc       420
     aaattgtgaa atttatatgc agcagttttt taagcataac ttttgatgtg ctttactaaa       480
     tcttataaat ttcaataggg acttatggga ccccaagacg aatcgaatga ggccaatacg       540
     gtcaaaatcg gctcagtcag tgacgagata ttccagtgac attgattcgg tacacatgtc       600
     tacatacagc caaacacaca gacatttgct cagctggtga ttctgagtcg atatgtataa       660
     atgacggtag gtctaggagg tctaattaaa aagttcattt ttcgagtgat tttatagcct       720
     ttcctcagta aggtgaggaa ggcaaaaa                                          748
//
ID   REP-6_PBa   repbase;    DNA;    INV; 698 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Repetitive sequences from the Pogonomyrmex barbatus genome:
DE   consensus.
XX
KW   Nonautonomous; REP-6_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-698
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (23-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. The feature of REP-6_PBa is the
CC   termininal repeats at both ends. Most copies are incomplete at
CC   the 5'-ends. The classification of the family is unknown. It
CC   includes a tRNA-Thr-GGT at 116-187 and 542-613.
XX
SQ   Sequence 698 BP; 169 A; 142 C; 168 G; 219 T; 0 other;
     ggggattcga aagaatacat gtatatgtgt atattgtaat atatatatat atgtgtatca        60
     ttgtattgtt gacgtgttat tctaaacacg ttatttgcga taaatatcat cacatgcctc       120
     ggtagtcgaa aggataagat gcctgcccgg taagcaggag atccaggttc gattcctggc       180
     tgaggtggta ttttttcgca aaataattac gagttttcac gactggttcg tggtcgggcc       240
     ccgccgtgac gcacaccctc ccttcttatt cgggggctcg agccatgctt gatgcaatct       300
     ctcctgtcgt gctccaggag gattatttgt atatttgcca atggcgttgg agggtgtcgc       360
     cgctgcagtc cgacctgcat ccatcgagag aataggacca tcatctctct ggagtaccgg       420
     tcgtggggat tcgaaagaat acatgtatat atgtatattg taatatatat atatatatat       480
     gtatcattgt attgttgacg tgttattcta aacacgttat ttgcgataaa tatcatcaca       540
     tgcctcggta gtcgaaagga taagatgcct gcccggtaag caggagatcc aggttcgatt       600
     cctggctgag gtggtatttt ttcgcaaaat aattacgagt tttcacgact ggttcgtggt       660
     cgggccccgc cgtgacgcac accctccctt cttatttg                               698
//
ID   REP-7_CQ    repbase;    DNA;    INV; 1022 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A repeat family from Culex quinquefasciatus - consensus.
XX
KW   Repetitive element; nonautonomous; REP-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1022
RA   Kojima K.K. and Jurka J.;
RT   "Repeats from the southern house mosquito.";
RL   Repbase Reports 11(1), 610-610 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. No TIRs.
XX
SQ   Sequence 1022 BP; 319 A; 189 C; 187 G; 327 T; 0 other;
     aaaaaaaaac gttacttaat ccaccgatgg tggttggtgc cttcctcaca attatgtaca        60
     tatttgtttc tgtagtaaga atgtcaaacc tacaaatttt atctaaattt tacttcttac       120
     aacatatcta catggagtat ggggtctaga atcccaaaaa tcattggacg taatattaga       180
     acaacaccta cggggctgtt tcatgaaaat tgttcacttt caatagttat attactttaa       240
     agttttttaa gccttaaggc agtaaaaaaa tatatctgtt catttttccc gggagtttca       300
     aatcaacaaa atcccgggag ccagatctcc ggatagatcc gaacaacttt ttcatcaaaa       360
     tatttgagat ccggcctctg aaatgtgtac aaatgacact taggtgctca taacttttga       420
     tagggttatc agatcttcaa tcttttgggc ttgttggaaa ggtcttttga ttacctatcc       480
     aacgatgggt cgcatgatag atccggacaa ctttttcatc aacatatttg agatccggcc       540
     tctaaaatgt gtacaaatga cactaaagtg ctcataactt ttgatagggt tatcagatct       600
     tcaatgtttt gggctcgtta gaaaggtctt tcaaatacct ttctaaaaat gtatgatcag       660
     acgggttttc ttacaaaaac cacccttttt acaatctttc aaactttagc cagaatcgtt       720
     tttttagcat aacttttgaa atacttaaca aaacttcata atagttaata taggtcttgt       780
     gggaccctaa gacggatcga atgagaccag aacggcccaa atcggttcag ccagtccgga       840
     gataatcgag tgcatttttt tcggtgcacg gacttacaga catacacacg cacagacatt       900
     tgctcagaat ttgattctga gtcgataggt atacgtgaag gtaggtctac gaggtcgaat       960
     taagaagttc atttttcgag tgattttata gcctttcctc agtaaggtga ggaaggcaaa      1020
     aa                                                                     1022
//
ID   REP-7_PBa   repbase;    DNA;    INV; 662 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Repeats from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Nonautonomous; REP-7_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-662
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (26-FEB-2014).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. The classification of the family is
CC   unknown. The features of this family is identical to those of
CC   REP-6_PBa. It includes a tRNA-Thr-GGT gene at 455-526.
XX
SQ   Sequence 662 BP; 181 A; 125 C; 142 G; 214 T; 0 other;
     cacacgctct ctcttcttat cctcttttta taaaactaag attaccaaat ataattataa        60
     agataataaa ttggaggctt tgctatatgc aaatctagta cctgttgaag gagttaggtg       120
     tcctactgct cgtactggat tccgagctta gttttataaa atctgagaca tctctgcgag       180
     atagtttact atccgggtgt aattgtcctc tcgagctttt taagcttgaa ataaagacgt       240
     ttctcaggga taagagtggc gttggagagt gtcgccgctg cggtccgacc tgcatccatc       300
     gagagaatag gaccatcatc tctctggagt accggtcgtg gggattcgag aatatacatg       360
     tatatatgta tattgtagtg tatgtatata tgtgtatcat tgaattgttg acgtgttatt       420
     ctaaacacgt tatttgcgat aaatatcatc acatgcctct gtagtcgaaa ggataagatg       480
     cctgcccggt aagcaggaga tccaggttcg attcctggct gaggtgatat ttttcgcaaa       540
     aataattgcg gatttttacg actggttcgt ggtcgggccc cgtcgtggca cacgccctcc       600
     cttcttatcc tctttttata aaactaagat caccaagtat aattataaag ataataaatt       660
     gg                                                                      662
//
ID   REP-8_PBa   repbase;    DNA;    INV; 526 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 19.03, Created)
DT   08-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Repeats from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Nonautonomous; REP-8_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-526
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (23-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. The classification of the family is
CC   unknown. The features of this family is identical to those of
CC   REP-6_PBa. It includes a tRNA-Asn-GTT at 217-288.
XX
SQ   Sequence 526 BP; 158 A; 88 C; 108 G; 172 T; 0 other;
     tgatttaacg atatgtagtt cgcgataagc attgtcttga aattcagaaa ataaaaatta        60
     ttcgacacga agacccagtc tgccgatgga agccatctat tgtctatttg tttgaaacat       120
     atatcggctg taattatcat tattgttatt cttcacgcgg cacttagcgt tctttcaaaa       180
     ttatttatcc ggttattgcg ataaatatta ccacatgcct cagtggtcga atggataaga       240
     cactcgcacg ttaagcgagc gatccaggtt cgattcctgg ctggggtaat atttttcgca       300
     ataaaataat tttcaatagt cggggattaa tcgatttcaa atttgattat cgatttaata       360
     gggaaggggt gaatttagat ttagctttga gtaggctacg ttgcaagatc gttgaattaa       420
     cgacacgtag ttcgcgataa gcattgtctt gaaattcaga aaagtaaaaa ttattcgaca       480
     cgaagaccca gtctgccgat ggaagccatc tattgtctat ttgttg                      526
//
ID   REP-9_PBa   repbase;    DNA;    INV; 448 BP.
XX
AC   .
XX
DT   24-MAY-2012 (Rel. 19.03, Created)
DT   24-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   Repeats from the Pogonomyrmex barbatus genome: consensus.
XX
KW   Nonautonomous; REP-9_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-448
RA   Bao W. and Jurka J.;
RT   "Repetitive sequences from the Pogonomyrmex barbatus genome.";
RL   Direct Submission to Repbase Update (24-MAY-2012).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. The classification of the family is
CC   unknown. It includes a tRNA-Ser-GGA gene at 157-228.
XX
SQ   Sequence 448 BP; 129 A; 79 C; 98 G; 142 T; 0 other;
     ttagcaacca agatcctgct tgccgaggaa atgccatgtt tcgcgttgta gtttgttagt        60
     taacatgtac tcggcctata tctatgtatt gtttattcgc acgtcggctg aaaaagacgt       120
     ttgacttatc tgaatattgc gataaatatt accatagcct cagtggtcta gtggataaga       180
     tgcctgcccg gaaagcaggc gatccaggtt cgatccctgg ctgaggtgat atttttcgca       240
     atatatattt ctggtggggg gataataaaa gggattttaa tcgatatcaa taatattgat       300
     catcgaatta ttatagagcc actacgttga aagtctgcta aaccaaagcg gcacgtagtt       360
     ggtaatataa ttaattgaat ttatttcata ttaaaagact ttagcaacca agatcctgct       420
     tgccgaggaa atgccatgtt tcgcgttg                                          448
//
ID   REP_SO      repbase;    DNA;    INV; 988 BP.
XX
AC   D38565;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Fern sawfly repetitive DNA sequences.
XX
KW   SAT; Satellite; Simple Repeat; REP_SO; pSOL family;
KW   satellite family; tandemly repetitive DNA sequence.
XX
OS   Strongylogaster osmundae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Tenthredinoidea;
OC   Tenthredinidae; Selandriinae; Strongylogaster.
XX
RN   [1]
RA   Sonoda S., Yamada T., Naito T. and Nakasuji F.;
RT   "Characterization of a family of tandemly repetitive DNA
RT   sequences from the fern sawfly, Strongylogaster osmundae
RT   (Hymenoptera: Tenthredinidae).";
RL   Jpn. J. Genet 70(2), 167-177 (1995).
XX
DR   Genbank; D38565; Positions       1     988.
XX
SQ   Sequence 988 BP; 183 A; 211 C; 121 G; 473 T; 0 other;
     aattcggata ttgttgtcga attggaatct tcgtcttaaa acaaaaaatg aataatcatt        60
     tctcccgacg agaaaaaatc atcactgcac ttttctcctt ttttgttttc attttctatc       120
     ttcctcatgt tttttctcct gtttcgcact ctgttccatt ccgttctttt ttccgaattt       180
     ttttcaaaat tttttttctt cgtctttttt tttctcgttt tcgttccttt ttcaagtttt       240
     tttcttgttt tttttccccg ttttttttct aagtcttttt tctccttttt gcaaaatttt       300
     tctttgttct ttttctccct tccgtttttg atttttttca aagttttttt ttactcaaat       360
     tttttttttc gcccaatatt tcattgtttt ttcttccaat ttttttttta cttttttttg       420
     ctttgttttc ttttttctct ttgttttttc tttctggttc tgtctaagtt ttttttttcc       480
     ttctttttca ttttttccgg tttttttttc gttttttttc cgaatttttt ttcggttttt       540
     ttcaaatttt tttccgtttt ttttgctttt ttttcctctc cgattccttc tgctctcttc       600
     cgcttccgga atgcaccctg aatgcaccca aaatgcacct gaaatgcact cgaaatgcac       660
     ccaaaacgca ccttaaatgc actcaatttc ccgacgtttt tcctgactac gaatcgattc       720
     cgatgccact cgggaccttg gatattgtcg ttgtgtcgat attctcgttc caaaccgaaa       780
     gaaatgtcaa tttcacgttc ggcgaaaatc ataattttgg acgtattctc tgacccttga       840
     tcgatttaaa tgcaattcgg catcccagat atcgttgtag gcatagaatt tctgtttcag       900
     accagagaaa aatgaatttt ttttgtctga ctaaattcgt catttttgca gcacgtcctg       960
     atttcgcatc aatgcaacgc gatcttcg                                          988
//
ID   RETRO14_AG_LTR repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO14_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; BLASTOPIA;
KW   INVADER; Long terminal repeat; MDG3; RETRO14_AG_I; RETRO14_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-230
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO14_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 1-1 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to BLASTOPIA, INVADER, and MDG3 from Drosophila
CC   melanogaster.
CC   4 bp target site duplication.
XX
SQ   Sequence 230 BP; 83 A; 36 C; 70 G; 41 T; 0 other;
     tgtaagaaag gaaaagcgct agtggtaggg agatagaaat aacggtagcg agatcaggag        60
     aacgagagcg tactaggaac gagttgcgag agagagaacg cgcagcgtta aaatcgggag       120
     cgcgggttaa gcgcgaggag ttgaattcgg accgcgaagc gaataacatg ttgtgaactg       180
     aagtcatcaa taaagcgtta tttgtcttaa accgaataaa aaactccaca                  230
//
ID   RETRO16_AG_LTR repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO16_AG
DE   retrotransposon - a consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; AACOPIA1;
KW   Long terminal repeat; RETRO16_AG_I; RETRO16_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-205
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO16_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 2-2 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to AACOPIA1 from Aedes aegypti. 5 bp target site
CC   duplication.
XX
SQ   Sequence 205 BP; 51 A; 29 C; 48 G; 77 T; 0 other;
     tgttaagaat aagcaacgtt ttgttgtttg ggtttgacag tactggcgta cggtagtata        60
     taagcgaacg aaaaattgtg aacttgtaca gttgcgtctc aggaataaaa gaattaacat       120
     cgaagcttgg tcgttattct ttttgttcaa agttcgtcgc gttcatttct cggttgatgg       180
     tttgcttttc gtcgttgttt taaca                                             205
//
ID   RETRO18_AG_LTR repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO18_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; DIVER;
KW   Long terminal repeat; RETRO18_AG_I; RETRO18_AG_LTR; ROO;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-269
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO18_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 3-3 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to ROO and DIVER from Drosophila melanogaster. 5 bp
CC   target site duplication.
XX
SQ   Sequence 269 BP; 70 A; 59 C; 66 G; 74 T; 0 other;
     tgttgtgcga gttgcgcatt gcgtttgctg cttgggcaaa ctgacatatg tcacagggat        60
     tgggtttgtc gcttgggttt gcattttttt gtgacagtag aattcggagt gcgacacgca       120
     cacattgaag tgataataaa tgaactttag tcttgcatgc gacatcaacg aagaaagatc       180
     gtcttgtccg tgagggctcc cgatttatgg tgaaagaaaa cctactaccc caccccctca       240
     agttacagtc caccgctaga gacacaaca                                         269
//
ID   RETRO1_AG_LTR repbase;    DNA;    INV; 301 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO1_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; NINJA; RETRO1_AG_I; RETRO1_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-301
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO1_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 5-5 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
SQ   Sequence 301 BP; 100 A; 61 C; 74 G; 66 T; 0 other;
     tgttggagaa cgtaaacatt acagaacgta aacattgggg tgacgggacg actcatgata        60
     acgagtagtg gttacacgcg cgagtcggaa agttgaaaag cgtaggcggc gcaattcgct       120
     ataaaaaggg ctgggctggc gccgtagggc ctttttcgac ggaaattttc tgtagcgtga       180
     acaaccacta gaagtgagta atattttggc gtgggttaat aaaacgcaaa gcaccactta       240
     taatattaac acttttcaca cacgacctaa aaaagactca caacacaatc cgaacgctac       300
     a                                                                       301
//
ID   RETRO20_AG_LTR repbase;    DNA;    INV; 223 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO20_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; NINJA; RETRO20_AG_I; RETRO20_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-223
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO20_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 6-6 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to NINJA of Drosophila simulans. 5 bp target site
CC   duplication.
XX
SQ   Sequence 223 BP; 69 A; 45 C; 55 G; 54 T; 0 other;
     tgttaggata gctcgaacga actcggcttt caattgtaaa cgcgtgaagt ggcaggtcgt        60
     tagcggaaga taagaacagg aaacacgatt atccgggcgg acttgatcgg tctcttgatc       120
     ggtgaacgcc agactaatcg gacgtgtttt taaaccctac gctacaaaat aaagttaaag       180
     gttctaaaaa atcctaaagt cttgtttacc gggagccgca aca                         223
//
ID   RETRO33_AG_LTR repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO33_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; RETRO33_AG_I; RETRO33_AG_LTR; ROO;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-479
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO33_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 9-9 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to BEL and ROO from Drosophila melanogaster. 5 bp target
CC   site duplication.
XX
SQ   Sequence 479 BP; 150 A; 102 C; 98 G; 129 T; 0 other;
     tgttggattt tgagataggc agaacacacc cgcaagttag gcaatgaatt aataacgccc        60
     atgcataggc aacacgcatt acatgtattt tcccattaga cagaaatccc atttaaacca       120
     gttcaaatcc agaatccagt tggaatagtg ccaacttaac aagaattaaa caagaaaatg       180
     tatgtatcgc taacggagca cgtaggctcc tgataagaac accccagaaa ttaccaataa       240
     atcgagttag aattccagtg taattactta gttcttcctc caagtttttg gtgagcattg       300
     ctcttattgg gaaattcgat tctcattaag agtggcaaga cctctttggc aaaatccgtt       360
     gttagatagg cggaagtttg catcggggtg ccagcctttt tcaaggcttt tgctcgggag       420
     tactgctccc ctttctaaaa atacagtcca cgagacggag taggccgtag aaacctaca        479
//
ID   RETRO43_AG_LTR repbase;    DNA;    INV; 242 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO43_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; MDG1; RETRO43_AG_I; RETRO43_AG_LTR;
KW   STALKER2; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-242
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO43_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 10-10 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to MDG1 and STALKER2 from Drosophila melanogaster. 4 bp
CC   target site duplication.
XX
SQ   Sequence 242 BP; 69 A; 53 C; 56 G; 64 T; 0 other;
     tgttatggga tctgcatgtt aaggttagcg tagtgtaacg catgctttag tttatagcaa        60
     acccgaagct agagagtgcc cgcgagaggc actcagttag gctttataag tagtggcaat       120
     gtggtaacga agctctctct tttgctcgac accgaagcga tcggttcgac gcacacaccc       180
     atcctgttat cttaagtggt gataataaaa agtacttgta acccctgtaa acccacaaaa       240
     ca                                                                      242
//
ID   RETRO5_AG_LTR repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO5_AG
DE   retrotransposon - a consensus.
XX
KW   LTR Retrotransposon; Transposable Element; AGM1;
KW   Long terminal repeat; RETRO5_AG_I; RETRO5_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-221
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO5_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 13-13 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to Moose LTR retrotransposon AGM1 from Anopheles gambiae.
CC   5 bp target site duplication.
XX
SQ   Sequence 221 BP; 67 A; 37 C; 50 G; 67 T; 0 other;
     tgttaggatt cattcataat ttaaattaac ggaatgagga actaccgttg tgcgggtttt        60
     tgttagttgg gaacggatag gattgtgtcc gtcaggaacg acaggttcta gagaagggta       120
     tataagaagt ctgaattttg tatcgtcctc tttttgcact gcaatttcgc tcaaataaaa       180
     acacaacgta ggaaaacaga cccaatcttt tggtcccaac a                           221
//
ID   RETRO60_AG_LTR repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO60_AG
DE   retrotransposon - a consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Long terminal repeat;
KW   RETRO60_AG_I; RETRO60_AG_LTR; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-235
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO60_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 14-14 (2002).
XX
DR   [1] (Consensus)
XX
CC   5 bp target site duplication.
XX
SQ   Sequence 235 BP; 83 A; 37 C; 50 G; 65 T; 0 other;
     tgttggaaac tgttgtaagg tttccaacga ctgtcagctg aggcgatgtt ttgtgtgtgc        60
     gcaaacagat aaaaagggag aaaaaccgcg gaaactggtt cattgcgatc aaaaaaacat       120
     acgaacgaag atacgaagaa aataaagaaa aaaactaatt ttttggcgca ccttaagtgc       180
     tagcctaaaa aatttacttt gttttctttt ttagttagag cgccagtttc taaca            235
//
ID   RETRO6_AG_LTR repbase;    DNA;    INV; 410 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO6_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; DIVER2;
KW   Long terminal repeat; RETRO6_AG_I; RETRO6_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-410
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO6_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 15-15 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to DIVER2 from Drosophila melanogaster. 5 bp target site
CC   duplication.
XX
SQ   Sequence 410 BP; 126 A; 73 C; 119 G; 92 T; 0 other;
     tgttccgttg ataacggaag atgaagagga gagagagaga gaaggaaggc atcgtgccac        60
     acggaacggg cgacatttgt agttgacggt aggcacgtac gtatcgatat aataagtcga       120
     gcgaaaacgc cattcggtgt attggtgtac gtgtagtctt gtttggcaag caagtgtggg       180
     agcaagagca cgaggctaga aacaggcgag caggtagaaa cgcgtatgcg atgaatttat       240
     actggtagtg gtaagagcga gcggtgaatt tcgaattgaa acggcattct gtttgtagca       300
     agcggcttag ccagacgcaa acgcaagtag cggtgttacg ttagtcaata aagcgacaca       360
     aaaaacaaac ttttctttcg tatccactgc ttcccagagc aaattatcca                  410
//
ID   RETRO76_AG_LTR repbase;    DNA;    INV; 461 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO76_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; NINJA; RETRO76_AG_I; RETRO76_AG_LTR; ROO;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-461
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO76_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 16-16 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans and ROO from Drosophila
CC   melanogaster. 5 bp target site duplication.
XX
SQ   Sequence 461 BP; 121 A; 96 C; 116 G; 128 T; 0 other;
     tgttgcgcag cgaccacatc gaaggtggct gtttgaattt ataattaaat aatttatatt        60
     ttgttcttag taggctatga tagcttgtaa tttagagtat aaaaggagga aataattata       120
     ataaatcagt cttacaccag catttgatga gtgcgtttct ttgtttggtg ttaagattct       180
     cccgggtgaa gctttgggcg aatacgattg ccttctcgac aacgctttac gaaatcagta       240
     gcggcgctac cacggcatag acctcccaat ttacattgga aaagaggtaa ctagcctggt       300
     aggccaatac tgaaagtagt ttggtgaagg agagttggac cgttgacgct cccgaaaccc       360
     ttttgcccgg gacgttctgt tccgtggcag cagacggttt aaccaagcgc tccagaacga       420
     ccgaaacctt cgcggtcggc ttggccgtcg ggcccggaac a                           461
//
ID   RETRO92_AG-I repbase;    DNA;    INV; 4011 BP.
XX
AC   .
XX
DT   19-JUN-2012 (Rel. 21.07, Created)
DT   19-JUN-2012 (Rel. 21.07, Last updated, Version -1)
XX
DE   LTR retrotransposon from Anopheles gambiae: internal portion.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; RETRO92_AG_;
KW   RETRO92_AG-LTR; RETRO92_AG-I.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4011
RA   Jurka J. and Kohany O.;
RT   "LTR retrotransposons from Anopheles gambiae.";
RL   Repbase Reports 16(7), 1444-1444 (2016).
XX
DR   [1] (Consensus)
XX
CC   Positions [1486-2013] - Integrase core
CC   LTRs are 100% similar to each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(160..1422,1426..3078)
FT                 /product="RETRO92_AG-I_1p"
FT                 /translation="MVDSKMSFPKLNATNWSTWKVRIENLLQRDDLWEVVE
FT                 KQPEAKNKADDVWMSDNRHAKATIILSLEDNQLPLVKNKETAHDVFNALKK
FT                 HHEKNTRSVKVSLLKKLCALNLAEHGDVEQHLFKIDELFDRLSAAGMALDT
FT                 DTKICMIFRSLPASYDTLVTALDCLSDDDISVELVRSKIADENQRRIEREC
FT                 GSNNRSDKAHSSAENNRHRPPRLCHFCKKPGHLMANCKKRQNQSKNNGNAK
FT                 TVLSDVPGTAFVVNGGCSNAWIIDSGASAHMCNDKAIFTELNEFAGGFITL
FT                 ANGEKTRVLGEGKAVISVIDGNQEKRHITFSDLKYVPGLEANLISVDRLAK
FT                 KNMSAIFDCEGCKIIDMHGTIVATGVRYNGQYYLQLAESSMRAASEQHQNC
FT                 QHQWHRRLGHRDWAAIERINKEQLGTGKIIDCGVKLVCECCLQGKSTRAPF
FT                 PAVTDRKSTKVLDIVHTDVCGPMETLTPSGNRYVMHIVDDFSRFTVTCLLQ
FT                 KKSDATEKIIEYVEWVGNIFGRKPRFIRSDGGGEFDNTRLRKFYVDNGIKP
FT                 QFTTPYSPQSNGVAERKNRSITEMATCMLIDSGMDKRFWGEAMLTATYMQN
FT                 RLPSRSVNKTPYELWWNRKPDLRHIRIFGSDAYVHLPKVKRNKLDDRAIKL
FT                 KLVGYSSEHKAYRFVNPETDDITISRDARFIEHENRNSFVEVSLVSRSQKN
FT                 ASDDNDETVIAQTSEGASGEEEIQNTETTETDENARPERVTRPPPYLEDYV
FT                 LGYAAGVASCAREEPLNVEEAMKETEWREAMASEMQSHHKIGTWELVPLPK
FT                 GRKAIGSRWVFKIKRNEQDEIVKYKARVVAQGYTQRFGIDYSDVYAPVTNH
FT                 STFRTFLTVACKRKMTVRHLDVKTAYLNGTLSEEIYMRQPPGFAVNGQEEL
FT                 VCRLKRSIYGLHQSARCWYRKLNDVLAKLAFKASSADQCMYVKSTNNNSIF
FT                 LLVYVDDMLIATSTEEE"
XX
SQ   Sequence 4011 BP; 1251 A; 795 C; 1014 G; 949 T; 2 other;
     ggttatgggc ctagttagag gctaattgcg taatttctgc tgcataatat cttgaccagt        60
     cagagtcgag tacgtgtgtg aaaattacga gtgaattcgg tcgcgcttcc gaatagaaat       120
     ccacagtgct aagcagctac gagcagtacc gaatacaaaa tggtggacag caagatgtcg       180
     ttcccgaaac taaacgcaac aaattggagc acttggaaag tgcgtataga aaacttgcta       240
     cagcgtgatg atctttggga ggttgtggag aagcaaccgg aggctaagaa caaagcagat       300
     gatgtttgga tgtccgacaa taggcacgct aaggcaacta tcatcttatc gctggaagac       360
     aatcagctcc cattagtgaa aaacaaggaa acggcacatg acgttttcaa tgctctcaag       420
     aaacatcacg agaaaaatac gcgatcggta aaagtttcac tactgaagaa actttgcgcg       480
     ttgaacctgg cagagcatgg tgatgttgaa cagcatttat ttaaaatcga cgaattattc       540
     gatcgcttga gtgcagctgg aatggctctc gacaccgaca cgaaaatatg catgattttt       600
     cgtagccttc ccgcatcgta tgatacgtta gtgacagcac tcgattgttt gtcggatgac       660
     gacatttctg tggaattggt gcgatcgaaa atagcggatg aaaaccagcg caggatcgaa       720
     cgtgagtgtg gctcaaacaa taggagcgac aaagcacata gctcagcaga aaataatcga       780
     caccgtcctc cccgtctttg tcatttttgt aagaagcccg gccatctcat ggcaaattgc       840
     aaaaagagac aaaaccaaag taagaacaat ggcaacgcga agaccgtatt gagcgatgtt       900
     cctggaacag cttttgttgt taacggtggg tgcagcaacg cttggattat cgacagcggt       960
     gccagtgctc atatgtgcaa cgacaaagcc attttcaccg aattgaacga atttgctgga      1020
     ggttttataa cgctcgcaaa tggtgaaaag acaagggttc tcggagaagg aaaagcggtt      1080
     atttctgtga ttgatggtaa tcaggagaag cggcacatta ccttcagtga cttgaaatat      1140
     gtgcccggat tagaagcaaa tctaatctca gtagatcgcc tagcgaagaa aaatatgagt      1200
     gcgatattcg actgcgaagg gtgcaaaatt atcgacatgc atggaaccat cgtggcaact      1260
     ggcgtacggt acaatggtca gtactatcta caattggcgg agtcgtccat gagagcagcc      1320
     agcgaacaac atcagaattg tcagcatcag tggcaccggc gtctgggaca ccgcgattgg      1380
     gcggccatcg agagaatcaa caaggagcag ctaggcaccg ggntgaagat catcgattgc      1440
     ggagtgaaac tggtgtgcga gtgctgcctt caggggaaat ctacccgagc ccccttccca      1500
     gctgtgaccg accggaagtc gacgaaggtg ttggacatcg tgcacacaga cgtatgtggt      1560
     ccgatggaaa cactaacacc gagtggcaac aggtatgtta tgcatatagt cgatgatttt      1620
     agcagattta ccgtaacttg tttactgcag aagaaatcag atgccacgga gaaaataatc      1680
     gaatacgtag agtgggtagg aaatattttc ggcagaaaac ctcgttttat tcgttctgat      1740
     ggtggagggg aattcgacaa cacaaggttg cgaaaatttt acgttgataa tggaattaag      1800
     cctcagttca caacacccta ttcccctcaa tccaacggcg tggcagaacg aaagaatcga      1860
     tcgatcaccg agatggctac ttgtatgctg atcgattcgg gtatggataa acgtttttgg      1920
     ggtgaggcga tgttgacggc aacatacatg cagaaccgct taccatctag atccgttaac      1980
     aaaacaccgt atgagctatg gtggaatcgt aagccggact taagacacat acgcattttt      2040
     ggtagtgacg cttatgttca tttgccgaaa gtgaaacgaa ataagttaga cgatagagct      2100
     ataaagttga aattggttgg atactcctca gagcataaag cttatagatt tgtgaatcct      2160
     gaaactgacg acataacaat aagtcgagac gcccggttca tcgaacatga aaatagaaac      2220
     agttttgtag aagtttcatt agtttcacgt tctcaaaaga atgcaagcga cgacaatgac      2280
     gaaacggtaa tcgcacagac aagcgaaggg gcatcaggtg aggaggagat ccaaaacacg      2340
     gaaactacag aaacagatga aaatgctcgc ccagaaagag taacaagacc gcctccgtac      2400
     ctagaagatt atgttttagg gtacgcagct ggcgtagctt cgtgtgctcg tgaagaacct      2460
     ttaaatgtag aagaggccat gaaagaaaca gagtggcgtg aagccatggc gtccgaaatg      2520
     caatcacatc ataagattgg aacatgggaa ttggtacccc ttcctaaagg acgtaaagcc      2580
     attggttcaa gatgggtatt taaaatcaaa agaaatgagc aagatgaaat agttaagtac      2640
     aaagctcgtg ttgtagcaca aggttatacg caacgatttg gcattgatta tagtgacgtg      2700
     tatgctccag tgacaaatca ctcgacattt cgaacttttc tcactgttgc ttgtaaacga      2760
     aaaatgacag tacgccatct ggacgtaaaa acggcatact tgaatggaac actaagcgaa      2820
     gaaatttaca tgcgtcaacc acctggtttc gcagtaaacg ggcaggagga gctagtttgt      2880
     cggcttaaac ggagcattta tggattacac caatctgctc gttgttggta tcgaaaatta      2940
     aacgacgtgt tagccaaact agcattcaaa gcttcttcgg cagatcaatg catgtatgta      3000
     aagtctacaa ataataattc gatcttcttg cttgtgtacg tagacgatat gctcatagcc      3060
     acatcaacag aagaagaanc cttactgatt cataaagatc tcagtcgaga atttgagata      3120
     gcctgtttgg gtgaaataaa gcattttcta ggcatggaag tgcagcgaga tggaggatgc      3180
     tataagctga gattgaagct atttatcgaa aaattattgg aagcccatgg aatgaaagat      3240
     gcgaaatgtt cgaaatcgcc tatggatcag ggctatttga aacaacagtg tgatgaatcg      3300
     gaactgcttg aaaatgtaac agtataccgc agtctggtag gaggtttatt gtatcttgct      3360
     gtgacagcta gaccagacat cgcagccgct acagccatcc tcgggagaaa gtttgccgct      3420
     cctacccaaa ctgattggaa tgcagctaaa cgagtaccgc gtttcttgaa aggaactaaa      3480
     gagaattatc tgcgacttgg tggtgctgaa aatgaagggc tgtgtggata ctctgactct      3540
     gattgggctg gagacaccga gagccggcgc tcaacgtcgg gattcgtgtt catgtactgc      3600
     ggaggagcta tatcttgggc cagccgtaga caaacgtgtg tcaccctatc atctatggag      3660
     gccgagtacg tggcattgtc acaagcatgc caggagacga tttggttgcg aaagctgctt      3720
     cgagattttg gagaaagcac atcaaatcct acagtcatca aagaagacaa ccaagggtgt      3780
     ttggcattcg tgaagacaga aagaactcat cgcagatcca aacacatcga cacgaaagaa      3840
     cgtttcgtgc aggagttgtg cgaaaggaac gagatcaccc tggaatattg tccaaccgag      3900
     gtaatgatag ccgacatcat ggccaaaccg ttgggaccgc aaaagcacga gttcttttgt      3960
     aaactgctca atatcgagta gttgtacgat ggagtcgtcg gtgaggagga g               4011
//
ID   RETRO92_AG_LTR repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO92_AG
DE   retrotransposon - a consensus.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; AACOPIA1;
KW   Long terminal repeat; RETRO92_AG_I; RETRO92_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-225
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO92_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 17-17 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to AACOPIA1 from Aedes aegypti. 5 bp target site
CC   duplication.
XX
SQ   Sequence 225 BP; 60 A; 47 C; 38 G; 80 T; 0 other;
     tgttggagtt tgcaccgacg cctaatctga cagcagtgtg aacaccttac agtttatact        60
     aacctttgcg ttcacacctt tctttatttt gttaccttgt tttgtaccat gtaaatatct       120
     tgatcagaca ataaaatgaa ctttgtagtt gagcttagac cgtcagccag aacggaacca       180
     ctgcgtttgt tggaatttat tccttttatt aagcttaact caaca                       225
//
ID   RETRO931_AG_LTR repbase;    DNA;    INV; 173 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO931_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; RETRO931_AG_I; RETRO931_AG_LTR; ROO; ROOA;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-173
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO931_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 18-18 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to ROO and ROOA from Drosophila melanogaster. 5 bp
CC   target site duplication.
XX
SQ   Sequence 173 BP; 65 A; 21 C; 44 G; 43 T; 0 other;
     tgttacgcgt aatcttgcgg aaaaatgttt aacgggaatt tggagaatag agaatgaact        60
     gtggagaggt gagcttcggc tgtggagaga tgaacttcgg caattaaaga ttgaaaccta       120
     tgaaataatt tagtagcaat aaagaactca tcgaaataag agctatcgaa aca              173
//
ID   RETRO932_AG_LTR repbase;    DNA;    INV; 199 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO932_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; AGM1;
KW   Long terminal repeat; RETRO932_AG_I; RETRO932_AG_LTR; ROO;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-199
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO932_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 19-19 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to AGM1 from Anopheles gambiae, ROO and BEL from
CC   Drosophila melanogaster. 5 bp target site duplication.
XX
SQ   Sequence 199 BP; 76 A; 27 C; 44 G; 52 T; 0 other;
     tgttgacgcc ttacggtagg caatgtgcat ggcacaatta gaattaggac aactagggta        60
     attagtacat aaaggattag atcgtaatta taaataagaa gaattagaag agcagtgaat       120
     ttgacaggga ataaacatta gcacttgaaa cctcggcgag ataacaacat tattttttac       180
     gattgagaaa gcgtcatca                                                    199
//
ID   RETRO933_AG_LTR repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO933_AG
DE   retrotransposon - a consensus.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; NINJA; RETRO933_AG_I; RETRO933_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-347
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO933_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 20-20 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
SQ   Sequence 347 BP; 116 A; 65 C; 82 G; 84 T; 0 other;
     tgttgtagaa aacaacgagg tcggcgaaaa gtgacaaatt gttgtttaca atttgtgttt        60
     attgataagc cgttgacagc cgaaccgaaa cgtcgccgat ttgccgttac cagagggagc       120
     agaaaaaaac atcgccgcgc gaatcgaaaa acggccatcg cgcgagcgcc atgagatcaa       180
     gtcagaaagc gtaagaaagc gtacgtgaaa ttttttaacc accgatccgc cgcgaaattt       240
     actttgctac gttgtaagat tttgagcaat aaagtagtgc agtaaactac gagttaaaag       300
     atcacgtttt aagtttgagt tgaagaaaga actttgcttc tagaaca                     347
//
ID   RETRO981_AG_LTR repbase;    DNA;    INV; 229 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO981_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; BLASTOPIA;
KW   INVADER; Long terminal repeat; MDG3; RETRO981_AG_I;
KW   RETRO981_AG_LTR; retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-229
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO981_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 23-23 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to BLASTOPIA, MDG3 and INVADER from Drosophila
CC   melanogaster.
CC   4 bp target site duplication.
XX
SQ   Sequence 229 BP; 72 A; 44 C; 59 G; 54 T; 0 other;
     tgtaggaaat aggagacagt tgacagttgt cagacaaggg atgtaaggcg aatgtcaagg        60
     aatgaattta ggatcaccct gtgctgatgt caatcgaact gacgacgcag taggtttagc       120
     tagagcgaaa cattcacgcg ggagaagcca agcgaaccag acgaaagtga ataaagtgga       180
     ttgtaaaacc atcgctttcc gcgtatcctc ttttcttcat cgttctaca                   229
//
ID   RETRO993_AG_LTR repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO993_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; IDEFIX;
KW   Long terminal repeat; MAG; RETRO993_AG_I; RETRO993_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-224
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO993_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 24-24 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to MAG from Bombyx mori and IDEFIX from Drosophila
CC   melanogaster. 5 bp target site duplication.
XX
SQ   Sequence 224 BP; 67 A; 43 C; 63 G; 51 T; 0 other;
     tgttgtgacg agtagaaaac gcccttaggc actcaggagc tgcgcgcctc ggaacgtgag        60
     tgtgttcggg tttagccagg gatcgtgagg acactctcgg ataagcggtc aagcgagtag       120
     gaacgcgatt aggaaataag cggaataaaa agtatcctgt tagctgtata agtaaacgcg       180
     tgttgtttaa cgtattatat tacgaaccac ccgaaaacgt aaca                        224
//
ID   RETRO99_AG_LTR repbase;    DNA;    INV; 285 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 8.01, Created)
DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO99_AG
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat; MAG; NINJA; RETRO99_AG_I; RETRO99_AG_LTR;
KW   retrotransposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-285
RA   Jurka J. and Drazkiewicz A.;
RT   "RETRO99_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 25-25 (2002).
XX
DR   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans and MAG from Bombyx
CC   mori.
CC   5 bp target site duplication.
XX
SQ   Sequence 285 BP; 88 A; 48 C; 71 G; 78 T; 0 other;
     tgttaggaaa aggcagtgct atagatgagt ccaacccgga cgtataaacg aaatgaagtg        60
     aaatgacagc taaggaaagt gacagttgaa atgacaggga aacggttgca cgcgcttcaa       120
     gccagtagcg agtgaagcga gcagcaggtg acaccgtttt aaagtttaat tgaagctcgg       180
     tattgctatt ttatttggat ttgtatttgt cttcaggaga ataaatagtt aaactaaaac       240
     tttcgccttg tggctgttcg ctctcgcact caaactgtgt ttaca                       285
//
ID   Rex1-1_FoCa repbase;    DNA;    INV; 3708 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Rex1; Non-LTR Retrotransposon; Transposable Element; Rex1-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3708
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2716-2716 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           252..1277
FT                 /product="Rex1-1_FoCa_1p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MNGGAVWRANCPFIGKSPPPDFYNLYKEKIACHKFND
FT                 ISQRINLFRQLENHSSGISSSLWNQIEDFNYYYSTSTYRSKKKKKKKGAKR
FT                 GRRFEAKKSFTKYLNNIPRGLVLNNLINIGISECKKSSPLKFNLPRFFYTN
FT                 PTSLSEAKLDIFEGLLVDHDLGLFCETWWKNDQVKNIPHFNTFARNRNYTD
FT                 SKGRIKKGGGLAIFLRDTFRGRIYNPNVKVDERIEFLVISVKPDLLPYSLS
FT                 NIIIILIYIPPQYVTELSQELNEFLSNVVTNVKTKFSKPGIFLFGDFNRWD
FT                 YGQFVETSKLDLVVRFPTFFNSRSHSMSNLDLIFTNLKSYYCEPVPLPPC"
FT   CDS           1240..3477
FT                 /product="Rex1-1_FoCa_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="NHIIASLFHCPPVKGTARNRVHACISFSPCPWFELRK
FT                 PLKIIKCKPQLNQLAIPFVEELNNLDIDIQKFESLPINTKVNELNSLLLSI
FT                 QTKVSCPYDKVINDGEPIWMNITLKRLFKAKRKAKKSNNVKLVFELQSEIK
FT                 TQISFAQSEVRKKFKDKIPGMNSSEWYHLIRKVCGLNPVSAIDKIKLIDLK
FT                 FSQLTDKELADVVNSHFSLICNTFDECESISLCPLPLDSSPIKVSAHEVAR
FT                 VIRKLNKKKSNCPNLVPTELIKYASNFLGPLIAIILNESFATFTVPDCWKI
FT                 GFVTPLLKKVTCSSLDDVRAITQTDVFSKIAESFMFDRIYSQIIDKINVNQ
FT                 FGALKKSSTAHYLIQINHFILKSIEIPGATVLIAAIDSLKAFDLVDHSLLA
FT                 ALLVDLGVHDIDILWLLSFLKFRKQIVKFEKSFSNPKRLTCGTPAGTKLAA
FT                 LLFIILINPILNALKIKLLDINPNFCIAGYIDDLVIAERVIGNAPKLQSAL
FT                 NILSEECKAVKITPNPRKCEILVVNFGGRRVNFPTKSFCIDSVPIPVVKSL
FT                 KILGVTFCPNFSWDSHIKNIVAKANSKLFQLRKLFNAGFSSKELLIAYGAY
FT                 IRCNLEYCSVVFGSGLNQKLVYKIESVQKKALSIIFRKRVDHLNYVECMQE
FT                 AELITLNERRELALNKFAYKLFFGRYRHFLPQFQRASCSGVSLRSNKDLLF
FT                 QPVIKSSKFKNSPINMIISKINDEWKSKSTVFGLSFEALTNLIDYS"
XX
SQ   Sequence 3708 BP; 1186 A; 618 C; 625 G; 1279 T; 0 other;
     tctctcccgc gcgcccgtgt tggcagcatg ggagaaaaac ctgctctcct catattttat        60
     ataattttaa gttttctacc atttaaatta attcattgag cgaattttcc atcaaaggtt       120
     gttttaattt aatagtataa agtgctctat acattacact actaattaat tgctgattcc       180
     gccaacgaca tgggtttatc tggctggatt tcttgttcct gtttcctgtt cctgttctca       240
     tatcattata aatgaacgga ggggcagttt ggcgagctaa ctgccccttt attggcaagt       300
     ctcctccccc tgatttttac aacttgtaca aagagaaaat tgcgtgtcat aagttcaatg       360
     atatctcaca aaggattaac ttattcaggc agctggaaaa tcattcttct gggatttcgt       420
     catcattatg gaaccaaatt gaggacttca attattatta ctccacctcc acttatcgtt       480
     caaaaaagaa gaagaaaaag aaaggcgcta aacgaggaag acggtttgaa gcgaagaaat       540
     cttttactaa atatttaaat aacatccctc gtggtctagt tttgaataat ttaattaata       600
     ttggaatatc ggagtgtaaa aaatcgtccc ctctcaaatt taatttaccc agattttttt       660
     acacaaaccc aacgtctcta tccgaagcaa aattggacat ttttgaaggt ttactggttg       720
     accatgattt agggcttttc tgtgagacat ggtggaaaaa tgaccaggtt aaaaatatcc       780
     cgcattttaa tactttcgct aggaacagaa attatactga tagtaagggg cgtataaaaa       840
     agggtggtgg attagctatc tttctcaggg acacatttag aggtagaata tataatccta       900
     atgtcaaagt cgacgaacgt attgagtttc ttgtaatatc tgttaaacct gatttgttgc       960
     cttactcact ttcaaatata attattatat taatttatat tccgccccaa tatgtaactg      1020
     aactaagtca agagcttaac gagtttttaa gtaatgtggt aaccaatgta aaaaccaaat      1080
     tttctaagcc tggtatattt ttgtttggcg attttaaccg gtgggattat ggccaatttg      1140
     tcgaaacttc taaattagat ttagtagtac gtttccctac gttttttaat tctagatcac      1200
     atagtatgag taaccttgac ttaattttta ctaatttaaa atcatattat tgcgagcctg      1260
     ttccactgcc cccctgttaa aggaacggca agaaatagag tacatgcttg tatctccttt      1320
     tcaccttgtc catggtttga attacgtaag cctttaaaaa tcattaaatg taaaccccaa      1380
     cttaatcaat tagctattcc ctttgtcgaa gaattaaata atttagatat tgatatccaa      1440
     aaatttgaat cgttaccaat caataccaaa gtcaatgagt taaattcttt attactctca      1500
     atacaaacta aagtatcgtg tccttatgac aaggttataa acgatggtga acccatttgg      1560
     atgaatatta cattgaaaag gttattcaaa gctaagcgca aagcaaaaaa gagtaataat      1620
     gtcaagctag ttttcgagtt acaaagcgaa attaaaacgc aaatttcctt tgctcagtct      1680
     gaagtgcgta aaaaattcaa agataagata cctggtatga attcatccga atggtatcat      1740
     ttaattcgta aagtttgtgg tctaaatccc gtgtctgcca tcgacaaaat taaattaata      1800
     gatctgaaat ttagtcagct aactgataaa gagctagccg atgttgtaaa ttcacatttc      1860
     tcactaattt gtaacacttt tgatgaatgt gaatctattt cgctgtgtcc actccctcta      1920
     gactcttccc ctattaaagt cagtgctcat gaggtagcga gagtaattag aaaactaaat      1980
     aagaaaaagt ccaactgtcc gaatttagtc cctactgagc ttataaagta cgcttcgaat      2040
     ttcttgggcc ctttaatagc cattatcctc aatgaatctt ttgcaacttt tactgtccct      2100
     gattgttgga aaatcggttt cgtcaccccc ttactcaaga aagtaacttg ttcatcactt      2160
     gatgacgtcc gtgcgataac tcaaactgac gtattttcaa aaattgcaga gagttttatg      2220
     tttgacagga tttattctca aataattgat aaaatcaacg ttaaccaatt tggtgcttta      2280
     aaaaaatcgt ctactgcgca ttatttaatt caaattaacc attttatttt aaaatcaatc      2340
     gaaattcctg gcgctacagt tttaattgct gctattgata gtctcaaagc attcgattta      2400
     gttgaccact cgttgttggc cgcacttctt gttgatcttg gtgtacacga cattgatatt      2460
     ttatggttat tatccttctt aaaatttcgt aagcagattg ttaagtttga aaagtcgttt      2520
     tcaaatccca agagattaac atgcggtaca ccagccggta ccaaactagc tgctcttctg      2580
     tttattatct taattaatcc gattctgaat gcattaaaaa tcaaattact tgatattaac      2640
     cccaattttt gtatagctgg atacattgat gatttggtta ttgctgaaag agttattggt      2700
     aatgcaccca aattgcaatc tgcactcaat attttgagtg aagagtgtaa ggcagttaaa      2760
     ataacgccca atcctcgtaa atgtgaaata ttggtagtta attttggtgg aagaagagtt      2820
     aattttccta ctaagtcctt ttgtattgat tcagttccta tacccgttgt aaagagctta      2880
     aaaattttag gggtgacttt ttgcccaaat tttagttggg atagtcatat aaaaaacatt      2940
     gttgcgaaag caaactctaa attatttcag ttaagaaaat tattcaatgc tggcttctcc      3000
     agtaaagaat tattaatagc ttacggtgca tatattcggt gtaatcttga gtattgttca      3060
     gttgtgtttg gctctggctt gaaccagaaa ttagtttaca aaattgaaag tgttcagaaa      3120
     aaagctttaa gtataatttt ccgaaaacga gttgatcatt taaattatgt tgaatgcatg      3180
     caggaagctg agttgataac tttaaatgaa aggagagaat tggctcttaa taaatttgct      3240
     tacaagttat tttttggtag gtataggcac tttttgccgc aattccagcg tgcttcgtgc      3300
     agtggtgtgt cattgaggtc aaacaaggat ttactatttc aaccggtaat taagtcgtca      3360
     aaatttaaaa attcccccat taatatgata atcagcaaaa ttaatgacga atggaaatca      3420
     aaatccacgg tttttggctt gtcatttgaa gctctaacaa atttgataga ttatagctaa      3480
     ctttatacaa actaagagta gataatatct tacgtacata tatattgtta agttaaatat      3540
     agtaatttag cccttagtta ttgttattta atcatttaaa gtaagttatt tctgtttgta      3600
     agctcacgaa aataggctag tgtgctatgc taaaatttca ttttgtgcat tccctagtac      3660
     tagtaaatga gggtaataaa ggctattatt attattatta ttattatt                   3708
//
ID   Rex1-2_FoCa repbase;    DNA;    INV; 3710 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Rex1; Non-LTR Retrotransposon; Transposable Element; Rex1-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3710
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2717-2717 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..3519
FT                 /product="Rex1-2_FoCa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTYHSTHLEILYLNEKTAEKINLLKQSRHHGIKISST
FT                 LSKDLADFQLLQNFPNYTFKTVKRGRAPGDEWKRRQKNHKKRGKCLERKAR
FT                 QRHQRRENKIVESKHIGANLLNLAKIDCSSKLSKLPICVPRVFYTNPTSLS
FT                 PDKLNSLEGXLVEYDIGVFVETWWKNDHVSYLHGFETFSKNRNYVGPNKKS
FT                 IKKGGGLAIFVRKTISAKICNINLKVDSKIESLVILLKPQFLPYSLSCIIV
FT                 VAIYLPPQFVNTLSRELDNYLIELVTKLRGKYKSPGILILGDFNKWDYKLF
FT                 VKSSKLKQIVSFPTFFNSTKSTSSNLDLIFTDLNLFYEEPELLPPVKSTLK
FT                 NRVHGCLSLSPLSCFECGKPRKTIICRPSVNQISEQFIAQLDNIQVDVNEF
FT                 NNFSLDQKVVQLNNLLSHTYDCVSPLYEKTICEVDPIWMTSRIRKLFKQQR
FT                 KAKKQKCIGKLKDIRSKIKDQIKISQTRIRQKFSEEVPGMNSSDWYQLVRK
FT                 VSGLEIVSAFTKIKSINSTFSNSNEKELANLVNSHFSKICTTYEGCDFINL
FT                 CPLPRDSRPIKVTDLQVSQAIRKLSSKKSNSPNLIPSALVKSANYFISPLL
FT                 ANIINQSFQNFKFPETWKKGYVTPLLKKVTCNSLNDIRAITQTDVFSKLAE
FT                 SFMFDNLYKQVEGKINLNQFGSLKNSSTSHYLVQINHFILKSAEIPGTTVI
FT                 VAGIDSFKAFDLVDHKILVDLLINYFGVNEIDVLWIVSFLRMRTQIVKNGK
FT                 VLSDEEFLSCGTAAGTKLAALLFILVIDFVLQKLQAFFINNPNFCCAGFVD
FT                 DIVLVERVINNRPKMQEALDCLASSCTEVKIXPNPQKCEILLVNFGGRRIK
FT                 YESKFFIHNVMVPVVQKIKILGVTITGSFKWDAHIQNIVGRANSKLFQLRK
FT                 LFTAGFSINELVRAYCVYLRSNLEYCSVVWGPGLSIKLINKLERVQKRALS
FT                 IINRKRVDRFNYEEVLELHKIESLESRRNTALEKFGFKLLIGRYNYFLPLF
FT                 TDNQNLRSLRSQKDIIVQPYIKNSVYQNSTINAIINKINEEYKKSQTIYGY
FT                 KLETIVNLRNPPLVE"
XX
SQ   Sequence 3710 BP; 1291 A; 527 C; 662 G; 1224 T; 6 other;
     attcccgcgc gttcctttga gcagcatggg ttggtttttt gtgagtcttc gtaaattttt        60
     tagaaaaagt tgtcgaatta attacaaatc gtttaaagtt ataaaaaaac aagtcaaatt       120
     agtacactwa ggtttactct agtatctgat ataaatttca tcccatattt atcacaattg       180
     acaacggtgt ggcgactttt aatttcaacg tggacaatgg acttggaaag tttcgttttt       240
     catcaaaatc aggggtagtc ttgttcgcaa gctacccctt gcgggcaagt cacgtttctt       300
     ggcatgactt atcattctac acatctggaa atcctatatt taaatgaaaa aactgcagaa       360
     aaaattaatt tattgaaaca gagtcgtcat catggaatta aaatttcatc aaccttatct       420
     aaagacctgg ctgattttca acttcttcaa aactttccca attatacctt caagactgtc       480
     aagagggggc gagcaccagg ggatgaatgg aaaagacgac agaagaacca caagaaaagg       540
     ggcaaatgtt tggaaaggaa agcacgacaa cgtcaccaac gtcgggaaaa taaaattgtc       600
     gagtcaaaac acattggcgc aaatctatta aatctggcca agatagactg tagtagtaag       660
     ttatcaaaat taccaatatg tgttcctaga gtattctata ctaatccaac ttctttgtct       720
     cctgacaaat taaattctct tgagggtast ttagttgagt atgatattgg tgtatttgtg       780
     gagacttggt ggaaaaatga tcatgttagt tatcttcatg gttttgaaac gttttcaaaa       840
     aatagaaatt atgtagggcc aaataagaaa tcgataaaaa agggtggcgg gctagccatt       900
     tttgttagga aaacaatctc ggcaaaaatt tgtaatatta atctgaaagt tgactcaaaa       960
     attgaatcgt tagttatttt gctaaaaccc caatttctac cctattcatt aagttgtatt      1020
     attgtggtag ctatatactt acctcctcaa tttgtgaata ctttaagcag agaattggat      1080
     aattatttga ttgaattggt tacgaaatta agaggtaaat ataaaagtcc gggtatatta      1140
     attttaggtg atttcaataa gtgggattac aagttatttg ttaaatcgtc taagttaaag      1200
     caaattgttt catttccaac attttttaac tcaactaaat caactagttc taatttggat      1260
     cttattttta cagacttaaa cttattttat gaggagcctg aactgcttcc gccagtcaaa      1320
     tcaactttaa aaaatcgggt tcatggatgc ttatctttga gtccgctatc atgttttgag      1380
     tgtgggaaac ctcgtaaaac aataatatgt agacctagtg ttaatcagat ttctgagcag      1440
     tttatagcgc aacttgacaa tattcaggta gatgtaaacg aatttaataa ctttagtcta      1500
     gatcagaaag ttgtgcagct aaataattta ttaagtcata cgtatgattg tgtttcacct      1560
     ctatatgaga aaactatttg tgaagtagat ccgatttgga tgacatcaag aattaggaag      1620
     ttatttaaac aacagcgaaa ggcaaagaaa caaaaatgta taggtaaatt gaaagacata      1680
     aggagtaaga ttaaagatca gattaaaatt tcacaaacca gaattaggca aaaatttagt      1740
     gaggaagtac ctggtatgaa ctcatccgac tggtaccaat tagtccgtaa agttagtggt      1800
     ttggaaattg tttcagcgtt taccaaaatt aaatcaatta atagtacatt ttcgaacagt      1860
     aatgagaaag aattagccaa tttagtaaac tcccactttt caaaaatatg tacaacgtat      1920
     gaagggtgtg attttataaa cttgtgtccg ctcccccgcg attcacgacc aatcaaagtt      1980
     actgatctcc aagttagtca agcaattcgt aaattaagta gtaaaaagag taacagtccc      2040
     aatttgattc ccagcgcatt agttaaaagt gcaaattact tcattagccc attattagct      2100
     aacataataa atcaatcatt ccaaaatttc aaatttcctg aaacttggaa aaaaggatat      2160
     gtcactcctt tactaaagaa agtgacatgt aattcgttga atgatattag ggcaattaca      2220
     cagacggatg tgttttctaa attagctgaa tcatttatgt ttgataattt gtataagcag      2280
     gtagaaggga agataaattt gaaccaattt gggagtctta aaaattcatc tacttctcat      2340
     tatttagtgc agattaatca ttttatatta aaatctgctg aaattccagg aacgacggta      2400
     atagtagcag gtattgatag ttttaaagcg tttgatttag tcgatcataa aatattagtt      2460
     gatctgttaa ttaattattt cggtgtaaat gaaattgatg ttctgtggat agtttctttt      2520
     ttgagaatga gaacccagat tgtaaaaaat ggaaaggttt tatccgatga ggagttcctc      2580
     tcttgtggaa cagcagcagg cacaaaatta gctgccttat tatttatttt agtgattgat      2640
     tttgtattac agaaattaca ggcctttttt atcaacaatc caaatttttg ctgtgctgga      2700
     tttgtcgatg atattgtact agttgagcga gttattaaca atcgcccaaa aatgcaggaa      2760
     gcattggatt gtttagctag tagttgtacg gaagtcaaga ttagsccsaa tcctcaaaaa      2820
     tgtgaaatat tgttggttaa ctttggaggg cgcaggatta aatacgaatc caaatttttc      2880
     attcataatg taatggtccc tgttgtccaa aaaattaaaa tattaggagt aacaattact      2940
     ggtagtttta aatgggacgc ccatattcaa aatattgttg gtagagccaa ctcaaaatta      3000
     tttcaattgc gtaaactttt tacagcaggc tttagcatta acgagctggt aagagcttat      3060
     tgtgtttatt tgcggtctaa tctcgaatat tgctcagtag tttggggtcc cggattaagt      3120
     attaaattaa ttaataagtt ggaaagggtg caaaaaagag cactstcaat tattaaccgt      3180
     aaaagggtcg ataggttcaa ttatgaggaa gttttagaat tacataaaat agaatcattg      3240
     gaaagtagga ggaatactgc acttgaaaaa ttcggtttca agttattaat tggaagatac      3300
     aattattttc taccattatt tactgacaac caaaatttga ggtcattgag gtcacaaaag      3360
     gatattattg ttcaacctta tattaaaaat tcggtgtatc aaaactcaac tattaatgca      3420
     attatcaata aaattaatga ggagtataaa aaatctcaaa caatttatgg ttataaacta      3480
     gaaacaattg taaaccttag aaatccccca cttgtcgaat aattaattag gctatattaa      3540
     actgtagata agattaatta tataattttg ttactgtaag ctcatgaaaa tagttctagt      3600
     ttgttttgca aaatcaattg gataatatgt ttttttacta ttaaccctga attttgtaat      3660
     cactagtakt agtaaatgag gataataaat gcttattatt attattatta                 3710
//
ID   ROOA_I      repbase;    DNA;    INV; 6849 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   03-JAN-2012 (Rel. 17.01, Last updated, Version 3)
XX
DE   ROOA_I is an internal portion of the ROOA endogenous retrovirus -
DE   a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; reverse transcriptase; gag;
KW   BCDPR superfamily; endonuclease; env; internal portion; ROOA_I;
KW   ROOA_LTR.
XX
NM   ROOA_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6849
RA   Kapitonov V.V. and Jurka J.;
RT   "ROOA, an ancient family of endogenous retrovirus ancestral to
RT   the modern ROO family.";
RL   Repbase Reports 2(3), 8-8 (2002).
XX
DR   [1] (Consensus)
XX
CC   ROOA is a family of ancient endogenous retroviruses that were
CC   active in the D. melanogaster genome ~2.5 Myr ago. ROOA belongs
CC   to the BCDPR superfamily of retroviruses. ROOA_I is ~62%
CC   identical to ROO_I, an internal portion of ROO currently active
CC   in D. melanogaster. The consensus sequence was reconstructed
CC   based on 5 copies of ROOA identified in chromosomes 2 and 4. The
CC   gag and env regions are not complete because of a lack of
CC   sequence data. ROOA_I copies are 96% identical to the ROOA_I
CC   consensus sequence. The reverse transcriptase and endonuclease
CC   domains are encoded by the ~4000-bp ORF. It encodes 1351-aa
CC   polyprotein (ROOApol, positions 1298-5350). ROOpol:.
XX
FH   Key           Location/Qualifiers
FT   CDS           1298..5350
FT                 /product="ROOA_I_1p"
FT                 /translation="RNFSRKFSPDAIQLYEQHVKKARASLQDVLEFIEQQY
FT                 NSVNAITKNTAQLATRKVQVRSCAFCSKDGHDMIKCLKFKAQSIEKRKEFV
FT                 QKNSMCLRCFGKHNAIDCRKEITCNRCSKGHNSLLHEDTKRSINSNSLKQG
FT                 QDTLLATAVVLVKNKAGGYNELRALIDGGSQKTLISEEAAQILRIPRVRNT
FT                 IEVEGISQTTQLSKNCDHLTIKKNIPSSFKTSTEALVLPTLHRALPSKMFD
FT                 IDINKEWKGYRLADPRFNEPSRIDMVIGVDLFPLIMMEKIKTVNGILGQKT
FT                 RFGWIVSGNITRAAKQKIISATTTINLKDLERFWELEDEADETITDNAECE
FT                 RKFQETTVTNEEGRFVVSIPFHQLHHKEAKLGDSRKQAMARLMQMEKKNRA
FT                 AYNEFFKETLKMGHLESVKTTGQGKYYLPHQAIIRPGSLTTKLRVVFDASA
FT                 KTTNGLSLNDVIIAGPKIQKDIFDILINWRKWQYVMVADIEKSYRQIKVAE
FT                 KDQEYQYILWRDDPKLPISEFKLTTVTYGTSAAPFLAVRCLRELADRFCQE
FT                 DSVLAETIRDDFYMDDIITGGDTVNECYELQRKSRQVMEKVGMHLRKWVAN
FT                 DERILADIQDDGAMEKICIEENESIKTLGLQWDPKKDTFTFLAENPMLTRI
FT                 TKRLVLSQLSRIFDPLGWLAPVTIQGKCFIQELWKLPMTWDVELESNLANW
FT                 WMEYAKGLSYLEEISISRWTGCSKGIMELHGFCDASEKAYAAAVYTKVGGR
FT                 VTLLAAKSKVNPIKNRKTIPKLELCAAHLLAKLLAKVQAIWSNKITTHAWS
FT                 DSQITIAWIPNKRSKDKFVRTREEEINKLIPNVKWNYVKSKDNPADVASRG
FT                 ISPQALKICEIWWRGPNWLAIDAQHWPTQKESEIVVVSTLIKSEYLQNHLL
FT                 SKYSSIDKLLRVMAYVLRFITKLRGKSQQPSHLTAEELKLAKIAVVKIQQQ
FT                 LDFGHEVRLLKNKRPLDPKSKLQALNPFLDSDGVLRVGGRLQNAMIPYNVK
FT                 HPIILDKSHLTWLIAKDAHKETLHGGINIMRTYIQREFWIFGIQNSLKKYL
FT                 RECIVCIRYKQEMSSQLMGNLPVYRVTTDYSFQNTGIDYARPFQIRCSKAR
FT                 GQKTYKGYICVFVCMATKAIHLEAVSDLSSDKFLEALRRFFARRGKSENLY
FT                 SDNGTNFVGASRVLDKEFVAAIKNNNELAPTLEKEGIKWHFIPTGSPHMGC
FT                 LSESGVKSVKHHLKRVICENSFTYEEFASLLCQIEAVLNSRPLVTVRSEND
FT                 GQYILPPGHFLVGRPLIGAPEHFGESKTISSLDRWKLIQRIRGDFWKKWKE
FT                 EYLVSLQQRTKWRQEKPNLKEGQLVLIKHENTHPARWPA"
XX
SQ   Sequence 6849 BP; 2444 A; 1304 C; 1482 G; 1618 T; 1 other;
     ttttcgtcct ttcgagaaat tctgttgttt tcctccacca gtggtaagaa acacagaaga        60
     aaaaaccagc gcttcaaagt aaaaagagca aggttattcg agtgattctg ttgtttcccc       120
     caccagtggt aagaaacaca gaataaaaga ccacgcctta aagtactagg actataaggt       180
     gaaacattgt gttcgtgctt ttccttggct gatcaatcag ctgtgagtcg aggcacagct       240
     aggtcaactg ggcgaccaat caaaaaatac tccaacggat cacgccaaag aatacaagca       300
     gaaagcacaa aaaagtcaca gtgattgttt tcccaagatg ttgtcggaaa gaactgtgaa       360
     attgatgcaa gaacaaggag agctgcagaa caaaatactg caagccatca aggaaaaggc       420
     atctatacca gcaatagaag tattggtagt ccgatttact actaacaaca atgcgctggt       480
     aaaattggga gttggcgatc atcaatattt taatgataaa atatttatta aaactatgga       540
     tgctatcaag ggctacaagg agtcacaatt aaaggtaaaa acacttgaag ggataaatat       600
     accaagcgga tctaaattat ctgataccgc atcagctcgg agctccagtc cagttgataa       660
     tctggttcaa ctggtggata gaagagcgga cagggtgagg caacagatga gcctaatcta       720
     cgaaacccta gtgagattga actagtcaag cagctggcaa tatgaaaagt cattggtcca       780
     acgtgacgta cacatgtaaa caagtatgac acagaactgc ctttgatcaa gatgaggcag       840
     acattctgca atctaaagtt gccgcactgg tacttcaaat gaagttggaa cagttcaaaa       900
     gttccaacta cgacgtgcca gaactcccaa aagtggacct tccaacattc aatggaaatg       960
     cgaaggaatg gccatcattt tacgagctaa tagacagcag gaaggatctc agcaacacaa      1020
     ggaagctggg atatttaaga gcctgcttaa aaggagaagc tcaaatggtg gttagccatt      1080
     tgataacggg atcagcggct agctatacag cagcgtggga gcttatctgc aaacgctatg      1140
     agaatagcag aaaaatattc tcccaacact tcaacaaatt aatggaactg gagtgcttgc      1200
     tgccccatga tgagaaaaat ttaaggaagt ttttggatac tgcgaccgag agcatattca      1260
     tcataaagga aaaaggaaaa atagaaagct ctgctgacgt aattttagca gaaaattttc      1320
     gccagatgcc attcagctgt atgaacagca tgtaaaaaag gcaagagcgt ccttacaaga      1380
     cgtactggag tttattgagc aacaatacaa ctcagtaaat gccattacca aaaataccgc      1440
     tcagcttgct acaagaaaag tgcaagttag atcgtgtgcc ttttgctcta aggatggcca      1500
     cgatatgata aagtgtctca aattcaaagc acaatcaatc gaaaaaagaa aagaattcgt      1560
     tcaaaagaac agtatgtgct taagatgctt tggaaagcat aatgctatcg actgcagaaa      1620
     ggaaattaca tgcaatcgat gctccaaagg gcacaacagc cttcttcatg aagacacaaa      1680
     acgcagtatc aacagcaata gcctcaagca aggccaagac acactattgg ctacagctgt      1740
     tgttttagtg aaaaacaaag ctggaggtta caacgagttg agggcgctta ttgacggtgg      1800
     atcccagaag acgctgattt cagaggaggc agcacaaata ttaaggattc ccagagtaag      1860
     gaatactata gaggtcgaag gtatctccca gactactcaa ttatcaaaaa attgcgacca      1920
     cctgacgatc aaaaaaaata ttccaagcag cttcaaaaca tcaacggaag cattggtttt      1980
     accgacactc catagagccc ttcccagcaa aatgtttgat attgatatca acaaagagtg      2040
     gaagggctac aggctagcag atccaagatt caacgagcca agcagaattg acatggtgat      2100
     aggtgtggat ctatttcccc tgattatgat ggagaaaata aaaaccgtga atggaatctt      2160
     gggacaaaaa accagatttg gatggattgt gtccggaaac ataactcgag cagcaaagca      2220
     aaaaattata agtgccacta caacaataaa tctaaaggac ctggaacgct tttgggaatt      2280
     ggaagatgaa gccgatgaga cgattacaga caatgcagaa tgcgaaagaa aattccaaga      2340
     aacaactgtc accaacgagg aaggcagatt tgtggtttca attccattcc accaattaca      2400
     ccacaaagag gcaaagctgg gagactctcg caaacaggca atggcaaggc ttatgcaaat      2460
     ggaaaagaag aatcgggctg catacaacga atttttcaaa gaaaccctta agatgggaca      2520
     tttggaatct gtaaagacaa cgggtcaagg taaatactat ttaccccatc aagcaatcat      2580
     caggcctgga agcttaacta cgaagctacg agtagttttt gacgcatccg caaagacgac      2640
     aaatggacta agcctaaatg acgttattat agctggtcct aagattcaaa aggatatatt      2700
     cgatattcta attaattggc gcaagtggca atatgttatg gtagctgaca ttgaaaaatc      2760
     gtatcgccaa ataaaggttg ctgagaaaga ccaagaatac caatatatcc tatggagaga      2820
     tgatccaaaa ttgccgatca gtgagtttaa gttaacaacc gtaacttatg gcacatcggc      2880
     agcacctttc ttagcagtcc gatgtctacg agagttggca gatcgctttt gccaagagga      2940
     tagcgtctta gcagaaacaa ttagagacga cttttatatg gatgacatca taactggtgg      3000
     agacacagtc aatgagtgct acgaacttca aaggaaatcg agacaagtga tggagaaggt      3060
     cggcatgcat ctgcgaaaat gggttgcaaa tgacgaacgt attttagctg acattcagga      3120
     cgacggtgct atggagaaaa tctgcattga ggagaatgaa tcgatcaaaa ccttaggact      3180
     tcaatgggat ccgaagaagg atacgtttac gtttttggca gaaaacccaa tgctaacacg      3240
     cataacaaag cggttagtgt tatcacagtt gtccagaatt ttcgacccac taggatggtt      3300
     ggcacctgta acgattcaag gcaaatgttt cattcaggaa ctgtggaagt taccgatgac      3360
     ttgggacgtt gaattggaat ccaacttagc taactggtgg atggaatatg ctaaaggtct      3420
     atcatattta gaagaaatta gcatttcacg ctggactgga tgctccaaag gtattatgga      3480
     gctacatgga ttctgcgatg catcagagaa agcatatgca gcggctgtgt atacaaaagt      3540
     aggcggcaga gttactttgc tagcagcaaa aagcaaagta aatcctataa aaaacaggaa      3600
     aacaattcca aagttggaat tatgtgctgc gcatttatta gcaaagttat tagcgaaagt      3660
     gcaggctata tggagcaaca agatcacaac gcatgcatgg agtgattcgc aaattactat      3720
     tgcttggata ccgaacaagc gcagcaaaga taaattcgtc agaactagag aggaagaaat      3780
     taataaacta attcccaatg tcaaatggaa ttacgttaaa tcgaaagaca atccagcaga      3840
     cgtggcttca agagggatat caccgcaagc tcttaaaatc tgtgaaattt ggtggagagg      3900
     gccgaattgg ctagctatag atgcacaaca ctggcccact caaaaggaat cggaaattgt      3960
     tgtggtatcc acattgataa aatccgaata tctgcaaaat catcttttat cgaagtattc      4020
     atcgatcgac aaacttctta gagtaatggc gtatgtatta cgcttcataa caaagctgag      4080
     aggaaaatcg caacagccgt cacatcttac ggcagaggaa ttaaagctag caaagattgc      4140
     cgtggtaaag atacaacaac agctggattt tggacacgaa gtcagactac tcaaaaacaa      4200
     aagaccatta gacccaaaga gtaagttaca ggcgctaaat ccgtttttgg atagtgatgg      4260
     cgtacttcga gttggtggac gattacaaaa cgcaatgata ccctataatg taaaacatcc      4320
     aattatactg gacaagtcac atttgacttg gttaattgca aaggatgctc ataaagaaac      4380
     tctgcatggc ggaattaaca ttatgagaac ttatattcag agggagttct ggatatttgg      4440
     catacaaaat tccttaaaga aatatttaag ggaatgtatt gtatgcatac gatacaagca      4500
     agagatgtcc agtcaactga tgggaaattt accagtttac cgagtaacga ctgattactc      4560
     gtttcaaaat actggaatcg actacgccag accgttccag attcgctgct caaaggcaag      4620
     aggtcaaaaa acgtataaag gatacatttg tgtatttgtt tgtatggcaa caaaagcaat      4680
     acatctggaa gctgttagcg acctttcgtc agacaaattc ctggaggctc ttcgacggtt      4740
     ctttgcaaga cgaggcaaga gtgagaacct atactcagat aatggaacaa acttcgtggg      4800
     agcttcaaga gtattggaca aagaatttgt agctgccatt aaaaacaata atgagttagc      4860
     acctactcta gaaaaagaag gcatcaagtg gcactttatt cccacgggaa gcccccacat      4920
     gggatgttta tcggaatccg gtgtaaaatc agtgaagcat caccttaaac gagttatttg      4980
     tgaaaacagc tttacatatg aagaatttgc atcgttgcta tgtcaaatcg aagcagtgct      5040
     aaactcgcgt ccattagtca ctgtaaggag cgaaaacgat ggtcagtaca tattaccgcc      5100
     gggtcatttt ctggtgggaa gacctctaat tggagctcct gaacattttg gagaaagtaa      5160
     gacaatcagc tctttggata gatggaagct tattcaacgc atcagaggtg atttttggaa      5220
     gaaatggaaa gaggagtatc tggtgtcatt gcaacagcga accaaatggc gccaagaaaa      5280
     gccaaatctg aaggagggac agctggttct tataaaacat gagaacactc accctgcaag      5340
     atggcctgca taaaacaatc agaggacttc ctgggagact tcaaggacta ctgcgatttc      5400
     ttcggcacca caatacggac aaaaattgac aacatcaaag aaaaagacaa aatactacgg      5460
     caccgtacca accgaaagaa aaggtttata ctgttctttg atatcggaaa tgcaaataga      5520
     atacaggaaa atatgcaagc gatcataaaa aacgaaaaac atctaatgga atcatagcta      5580
     ctgtgctatg ctgtatgttg acaatcagac ctcggtcatc aatgccacgg aaaaattagt      5640
     aagaccaact acgatggaag caaaccggaa tttgggaaaa ctgacccaac aagtcaacat      5700
     tattgcagaa accatgaagg agcactttat ggtatataag gagtcaatta aattccttat      5760
     gttatcaaat caagtgcgaa actggattga acaggcagaa agcctacaag caacagcgat      5820
     ctcaatgata acggacatta gtgaaggaag aattcatcct acactaattg cgcctaacaa      5880
     aatgctggag gagttcgaaa aagttaagca aaaattagga cgaaatcaaa tgctaccgag      5940
     tggaaattca gttatacaat taccactgat ctataaactg atgaaggccc aagctatgtt      6000
     gtgggaaaat ttactattca tcgaagcaaa attgccgata tacaacaatc aggaaacgga      6060
     tctctttgaa gtaatcccaa taccactgtg gacaaacgga acaaagctta ttccgaaatt      6120
     gaattctaca ttttttgcgt attttttttt caatacagac ataaacgcat atcacctaat      6180
     gtctgaaatg gaaattaacc aatgcagaca agaggattcg acaaggccat ggctttgcca      6240
     gaaaataatt gggcatggaa aaacgcggat gatcactctt gcgaawtatc accattgaaa      6300
     ccaagcaagg cacactcatg cgaaatgatg gaattccaag gcaattcgtt catcaaagag      6360
     ataagtggat ccaaccgttg cctatttaga ctgtttcgga atacaacagc taatataaga      6420
     tgcaacgaac agcatcaaga cagaacagct tataagactg cccaatcaag gcattataca      6480
     actacttgca ggatgcacag caatattagg ggatacaaca ataattactc ctcaaaaagt      6540
     aatttcgaca gcgtctgaaa tgtctattat ctttcccagt ttacgaatta tagacgacaa      6600
     ggagaaggag gcatggaacg tggtcccgct gaagcacttg attgtcaaca acactaatga      6660
     actgcaaaat cttcaaatgc gcatcaagac tctgaaaaat aacaaggtac acattgatga      6720
     cttgattttc cacacggcaa gcggacactc ggctctaggg ttgacaacga ttatcataat      6780
     tatattggtc atttatatcc ggaggcaacg cataaatgag agacgactac tggccgtaca      6840
     ctcaaggga                                                              6849
//
ID   ROOA_LTR    repbase;    DNA;    INV; 386 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.01, Created)
DT   03-JAN-2012 (Rel. 17.01, Last updated, Version 3)
XX
DE   ROOA_LTR is a long terminal repeat from the ROOA endogenous
DE   retrovirus - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; BCDPR superfamily; ROOA_I; ROOA_LTR.
XX
NM   Merlin-1_Roryzae; ERV1-2_ACar-I; RTE-2_OL; Copia2-LTR_VC;
NM   Gypsy20-I_Dya.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-386
RA   Kapitonov V.V. and Jurka J.;
RT   "ROOA, an ancient family of endogenous retrovirus ancestral to
RT   the modern ROO family.";
RL   Repbase Reports 2(3), 9-9 (2002).
XX
DR   [1] (Consensus)
XX
CC   There are more than 10 copies of ROOA_LTR in the D. melanogaster
CC   genome. They are ~96% identical to the consensus sequence.
XX
SQ   Sequence 386 BP; 134 A; 70 C; 85 G; 95 T; 2 other;
     tgtctaaata tgtgtttaga catgataagt aggcaaacta taaaaatgtt ctatttatgg        60
     gctgcaataa acatgtcacy ggacagcata agtggcaact acagataagt acgattgcag       120
     cggcctattg ccgaagtgtc aagagatatg accaygcggg aggtgattag cgcggtcata       180
     gtcctcaaac atagatttaa gaataaaact cagctgcatt taccaacgca gactgcggcg       240
     tcttacaagc gctgcattat ataattagat gataagaacc tatgtaagaa tgaataaaag       300
     gcgaagccct cgcagtagcg agtcagttag attcaaacac ccgaattgaa ctcattaagt       360
     gtacgcacaa gtttatagtg tgaaca                                            386
//
ID   ROO_I       repbase;    DNA;    INV; 8256 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   03-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   ROO_I is an internal portion of endogenous retrovirus ROO - a
DE   consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; ORF1; gag; pol; BCDPR superfamily; env;
KW   internal portion; B104; ROO_LTR; ROO_I.
XX
NM   ROO_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Scherer G., Tschudi C., Perera J., Delius H. and Pirrotta V.;
RT   "B104, a new dispersed repeated gene family in Drosophila
RT   melanogaster and its analogies with retroviruses.";
RL   J. Mol. Biol 157(3), 435-451 (1982).
XX
RN   [2]
RP   1-8256
RA   Kapitonov V.V. and Jurka J.;
RT   "ROO_I.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [2] (Consensus)
XX
CC   ROO belongs to the BCDPR superfamily of retroviruses.
CC   It's one of the most ambiguous retroviruses in the drosophila
CC   and it has 50-100 proviral copies per haploid genome.
CC   Gag, RT, endonuclease and env are encoded by one long
CC   ORF (position 855-7934; 2360 aa-long polyprotein).
CC   ROO generates 5 bp-long duplication of targets sites.
CC   It's an active mobile element.
XX
FH   Key           Location/Qualifiers
FT   CDS           855..7934
FT                 /product="ROO_I_1p"
FT                 /translation="MMSEKTIQFLKKQSEIILEIRKLEVKPTLTDVEILKL
FT                 NELQKCFIANHSNLLKIGVVDHEYFNAKQYDLIMMVLEKIKNKNEKIKGES
FT                 VENTFPKSNTVPKSNPPPTLNLEMRGHPEKEGIAQNNALKVEQAFRNNVGQ
FT                 FRVYLEDTSKLIDSSPDFLKIRKNKIEFLWHKIDNLIEQVNSHFESSLFEE
FT                 EISELEFDKQNILTAINSRLSGTINKAEMSTVVKAEELPTLPKIQIPTFFG
FT                 DSKEWDLFNELFTELIHVREDLSPSLKFNYLKSALKGEARNVVTHLLLGSG
FT                 ENYEATWEFLTKRYENKRNIFSDHMNRLMDMPNLNLESNKQIKTFIDTINE
FT                 SIYIIKLKAQLPEDVDAIFAHIILRKFNKESLNLYESHVKKTKEIQALSDV
FT                 MDFLEQRLNSISSFSQEVKPVKKMINNNKNKNYSDNCAYCKLPGHYLIQCH
FT                 KFKIMNPAERSDWVRKNGICLRCLRHPFGKKCISEQLCSTCRKPHHTLLHF
FT                 AGHNPEKVNTCRTTGQALLATALIQVKSRYGGFEQLRALIDSGSQSTIISE
FT                 ESAQILKLKKFRSHTEISGVSSTGTCISKHKAVISIRNSPKNLEIEAIILP
FT                 KLMKALPVNTINVDQKKWKNFKLADPDFNKPGRIDLIIGADVYTHILQNGV
FT                 IKIDGLLGQKTDFGWIVSGCKKSKGKETIVATTIEIKELDRYWEVEEEEKD
FT                 DIESEICENKFIKTTKKDSDGRYIVSIPFKEDVTLGDSKKQAIARYMNLEK
FT                 KLKRNEKLKVDYTKFMNEYMDLGHMIEVSDEGKYFLPHQAVIRDSSLTTKL
FT                 RVVFDASAKTTNNKSLNDIMWVGPRVQKDIFDIIIKWRKWEFVVSADIEKM
FT                 YRQIKIDNNDQKYQYILWRNSPKEKIKTYKLTTVTYGTASAPYLATRVLVD
FT                 IADKCKNQVISAIIRNDFYMDDLMTGADSVEEANKLITLIPHELQKVGFNL
FT                 RKWISNNSKILTTVEDTGDNKVLNIIENECVKTLGLKWEPQKDLFKFSVNC
FT                 NDESKNINKRVVLSTLAKIFDPLGWLAPVTVSGKLFIQKLWINKSEWDQEL
FT                 SIEDKNYWEKYKENLLLLENIRIPRWINSNSSSVIQIHGFADASEKAYAAV
FT                 VYAKVGPHVNIIASKSRVNPIKNRKTIPKLELCAAHLLSELIQRLKGSIDN
FT                 IMEIYAWSDSTITLAWINSGQSKIKFIKRRTDDIRKLKNTEWNHVKSEDNP
FT                 ADLASRGVDSNQLINCDFWWKGPKWLADPKELWPRQQSVEEPVLINTVLND
FT                 KIDDPIYELIERYSSIEKLIRIIAYINRFVQMKTRNKAYSSIISVKEIRIA
FT                 ETVVIKKQQEYQFRQEIKCLKIKKEIKTNNKILSLNPFLDKDGVLRVGGRL
FT                 QNSNAEFNVKHPIILEKCHLTSLLIKNAHKETLHGGINLMRNYIQRKYWIF
FT                 GLKNSLKKYLRECVTCARYKQNTAQQIMGNLPKYRVTMTFPFLNTGIDYAG
FT                 PYYVKCSKNRGQKTFKGYVAVFVCMATKAIHLEMVSDLTSDAFLAALRRFI
FT                 ARRGKCSNIYSDNGTNFVGAARKLDQELFNAIQENITIAAQLEKDRIDWHF
FT                 IPPAGPHFGGIWEAGVKSMKYHLKRIIGDTILTYEEMSTLLCQIEACLNSR
FT                 PLYTIVSEKDQQEVLTPGHFLIGRPPLEIVEPMEDEKIGNLDRWRLIQKMK
FT                 KDFWVKWKSEYLHTLQQRNKWKKEIPNIEEGQIVLLKDENCHPARWPLGKV
FT                 EKVHKGNDDKVRVAKVKMQEGYITRPITKICPLEGIKSVDKNEADQEPKRR
FT                 TRATSGMSKIGIIMAMLLFVLSCQVSSALPKDIAPRYSIDKINKTSAIYLD
FT                 PLGDVEIVSTSWNLVIYYKMDPYFKMLTKGNALIQSMRKVCERLHSFEEQC
FT                 SLVLDNMQSQLSELEENNKLFMIQSRSRSKRAPFEFMGSLYHILFGIMDED
FT                 DREQLEENMKNLLDNQNNLDKLIQKQTSVVDSTSNLLKRTTEDVNSNFRSM
FT                 QIRIENMTEVLKENYYVYKESIKFFMITKQLHSLIEEGEKIQAGIISLLID
FT                 INHGRLNTNILRPNQLKKEIAKIQQSLSENLVIPGKRSGTELKEVYTLLTA
FT                 RGLFIDDKLIISAKVPLFSRHPSKLFRLIPVPIRNEDRIIMVHTTSEYLIY
FT                 NFEIDSYHIMTEATLNQCQKWQLNKRICKGSWPWNSANDNACEIQPLKPDK
FT                 AANCIYKTVVDSKSYWVELEKKSSWLFKVPANSKVRLQCTGSQIELFDLPQ
FT                 QGVLSIAPYCTARTDDKILVAHHNIQSESEELLSTPYIGEVSEAPKIIWDP
FT                 LKLSILNHTEEFERLNNEIKFMKENHQKLKDLHFHHISGHAGLIIALILMI
FT                 VLIIYFIRKCAVQQRMQAITFAGPLPVL"
XX
SQ   Sequence 8256 BP; 3221 A; 1271 C; 1543 G; 2221 T; 0 other;
     tttggtcaat cgagccttta atcgactctg cagtttcccc ctaccaaagg taaggaactc        60
     agagaaaggc cagctccttt aagcatctta cagctaaagg tagcaaaaat aagtgactct       120
     tgtttccccc taccaaaggt aaggaacaga gtataaatat aaaaagcaaa agatacaaaa       180
     gaatctttta tgttttaaaa caagcacctt atagtctata gctaaaggtt gctttgtgta       240
     ccattataaa ttgtggtaag gcgtgcttga ggccatacat cagcaattgt gaaattaaaa       300
     agtgcataac aaaagtgcct tataaatgct ctaatagcat taaatcagct cataaataga       360
     gtgcagtgta tatgccataa gagcataaat taaataaaaa gtgcctgaaa acagtgcctt       420
     ataaatgctc taatagcatt aaatcagctc ataaatagag tgcagtgtat atgccaaaag       480
     agcataaatg ccgaaataaa tggctaaaaa acaaaaaatc tgactggact acaaaaataa       540
     taaaacgtgc caaaaaaaaa aaaaaaaaaa aaaaaatcat ctttaaacat cgacggagcc       600
     ttaaagaaga gaaggaagtc aaattcaaag gagcctctac cagcagcaga agcagcaaca       660
     acagcagcag cagaagcagc aacagcagta gcaacagcag caacaacagc agcaacagca       720
     gcagcaacaa caacgacatc agctaagtca aaacaagaat tttctgttta tccaaacaca       780
     catatatata taaatacata taaaatacat atacacgtac tatatatatt aagaaattac       840
     aaaaaatttt caaaatgatg tcagaaaaga ctattcaatt ccttaagaag cagtccgaaa       900
     ttattttgga aattagaaag ttggaagtaa aaccaacatt aacagatgta gaaattctaa       960
     aattaaatga gcttcaaaaa tgtttcattg ctaatcatag caatttgtta aagatcggcg      1020
     ttgtcgatca tgaatatttt aacgcgaagc agtatgattt aataatgatg gtgttagaaa      1080
     aaattaaaaa taaaaatgaa aaaattaagg gcgagtcggt agaaaacact ttccctaaat      1140
     caaacactgt ccctaaatca aaccctcccc ctacattaaa ccttgaaatg cgtggtcacc      1200
     ctgaaaaaga gggtatagca caaaacaacg ctttaaaagt agagcaggca tttcgtaata      1260
     atgttggcca atttcgagta tatctagaag atacgtctaa actaatagac agtagtccag      1320
     atttccttaa aataaggaaa aataaaattg aatttttatg gcataaaata gataacctga      1380
     ttgaacaggt gaatagtcat tttgagagtt cgctattcga agaagaaatt agcgaacttg      1440
     aatttgacaa acaaaatatt cttacagcca ttaatagtcg actcagtggc acaataaata      1500
     aagctgaaat gtcgacggtt gttaaggcgg aggagttacc aaccctgcct aaaatacaga      1560
     ttcccacctt ctttggtgat tccaaagaat gggatctttt taatgaactc tttacagagc      1620
     tcatacatgt gagagaggat ctcagtcctt ctctcaaatt taattatcta aagtcagcat      1680
     taaaaggaga agccagaaat gtggttactc atttactgct cggctctgga gaaaattatg      1740
     aagccacttg ggagtttttg accaagcgat atgagaataa aagaaacata ttctcagatc      1800
     atatgaatag gcttatggat atgccaaatt taaatttaga atccaataag caaataaaga      1860
     catttattga cacgattaac gagtcaattt atattataaa attaaaggca caattaccag      1920
     aagatgtgga tgcaattttc gctcacataa ttcttcggaa attcaataaa gaatcactca      1980
     atttatatga aagccatgtt aaaaagacaa aagaaataca ggcactttct gatgtcatgg      2040
     actttttaga gcaaaggctc aattctatat catcattctc acaggaagta aaacctgtaa      2100
     agaaaatgat taataataac aagaataaaa attatagtga caattgtgca tattgcaaac      2160
     taccagggca ttatttaatt caatgccata aatttaaaat aatgaatcca gcagaacggt      2220
     ctgactgggt aagaaaaaat gggatttgcc taagatgtct gaggcatccg tttggtaaaa      2280
     aatgtataag cgagcagctt tgttcgactt gtcgtaaacc tcaccacacg ttacttcact      2340
     ttgcaggtca taatccagaa aaagtgaata cgtgtagaac aacaggtcaa gccttgttgg      2400
     ccacggcctt gattcaagta aagtcgaggt atggaggctt tgaacaatta agagcattga      2460
     ttgatagtgg ctctcaaagc acaattattt cagaagagtc tgcacagatt ctaaaattga      2520
     aaaaatttcg gtctcatact gaaataagtg gagtatcttc cacaggaacg tgcatctcca      2580
     agcacaaagc ggttatttcg ataagaaatt ctccgaaaaa tttagaaatt gaagcaatta      2640
     ttctcccaaa acttatgaag gcacttccag tcaacacgat taatgttgat cagaaaaaat      2700
     ggaagaactt taaattagcc gaccccgatt ttaataaacc gggtcgcatt gatttaatca      2760
     ttggagcaga cgtatatact cacattctgc aaaatggagt tataaaaata gacggtctcc      2820
     ttgggcaaaa aactgatttc gggtggatag tttctggatg taaaaaatcc aaaggaaaag      2880
     aaaccattgt agccacaaca atagaaataa aagagttaga tcgctactgg gaagtggaag      2940
     aagaagaaaa agatgatatc gagtctgaaa tctgtgaaaa taaatttatc aaaacgacaa      3000
     aaaaagattc agatgggcga tacattgtgt caattccatt caaggaggat gtcaccttag      3060
     gagattcaaa gaaacaagcg atagctcgtt acatgaatct ggagaaaaaa ctaaaaagaa      3120
     atgaaaaact taaggttgac tacactaaat tcatgaatga atacatggat ttaggacaca      3180
     tgattgaagt gagtgatgaa ggcaaatatt ttttaccgca ccaggcagtg attagagatt      3240
     caagccttac gaccaaattg agagtagttt ttgatgcttc agcaaaaact acgaataaca      3300
     aaagtttgaa cgacataatg tgggttgggc cacgagttca aaaagatatt tttgacatta      3360
     ttattaaatg gagaaaatgg gaatttgttg tttcggcaga cattgaaaag atgtaccgac      3420
     aaattaaaat agataataat gatcaaaaat atcaatatat tttatggaga aattctccaa      3480
     aagaaaaaat taaaacatat aaattaacca cagtcactta cggaactgca tctgcaccat      3540
     atttggctac cagggttctg gtagatattg cagataaatg taaaaaccaa gttattagtg      3600
     caataattag gaatgatttc tatatggatg acctaatgac tggagctgat tcggtagaag      3660
     aagctaataa attaataaca ttaattcccc atgaattgca gaaagttgga ttcaacttaa      3720
     ggaaatggat ttccaacaat tccaaaatat taaccactgt ggaggacaca ggggacaata      3780
     aggttctcaa tattatcgaa aatgaatgtg ttaaaacttt aggactaaaa tgggaacctc      3840
     aaaaggattt atttaagttc agcgtaaatt gtaatgatga atcaaaaaat ataaataagc      3900
     gcgttgtgtt atcaacgcta gcaaaaatat ttgatccgtt aggatggttg gcaccagtca      3960
     cggtttcagg aaaacttttt attcaaaaac tttggataaa taaaagtgaa tgggatcagg      4020
     aattatccat agaagataaa aattattggg aaaaatataa agaaaattta ttattgttag      4080
     agaatattcg aatcccaagg tggattaatt caaacagttc ttcagtcatt cagattcacg      4140
     gatttgcgga cgcctccgaa aaagcatatg ctgcagtagt ctatgctaaa gtaggacctc      4200
     atgttaatat aatagctagc aaaagtagag tcaaccctat aaaaaatagg aagacaattc      4260
     ccaaactcga gctgtgtgca gctcacctgc ttagtgaatt aatccaaaga ctaaaaggat      4320
     caattgacaa tataatggag atctatgctt ggagtgattc cacgattacc ttagcatgga      4380
     ttaacagtgg tcaaagtaag atcaaattta taaaaagaag aacggatgac attcggaaat      4440
     taaaaaatac tgaatggaat catgttaagt cagaggataa tccagcagat ttagcatcca      4500
     ggggagtgga ttctaaccag ttgatcaact gtgatttttg gtggaaaggt ccgaaatggc      4560
     tagcagaccc aaaagaactt tggcctcggc agcagtctgt agaagaacct gtcttaataa      4620
     atacggtatt aaatgacaaa atagatgatc ctatttacga attaatagaa aggtattcca      4680
     gtatagaaaa acttatacgt ataatagcat acataaatag attcgtgcag atgaaaacaa      4740
     gaaataaagc ctattcatca attatttcag taaaggagat aagaatagcg gaaacagttg      4800
     ttattaagaa acaacaagaa taccagttta ggcaagagat aaagtgcctt aaaatcaaaa      4860
     aggaaatcaa gacaaataat aaaatattgt cattgaatcc atttttggac aaggatgggg      4920
     ttctaagagt tggaggaaga ttgcaaaatt ccaatgcaga atttaatgtt aaacatccaa      4980
     tcattttaga aaaatgccac ctaacaagct tattaataaa aaatgctcat aaggaaacat      5040
     tgcatggagg gataaaccta atgcgaaact atatccaaag aaagtattgg attttcgggt      5100
     tgaaaaattc gttgaaaaag tatttaagag aatgtgtaac gtgtgcaagg tataaacaaa      5160
     atacagctca gcaaataatg ggtaacttgc caaaatatag agtgacgatg acattcccgt      5220
     ttcttaatac tggaatagat tacgcaggtc cttattatgt taaatgttca aaaaatcgtg      5280
     gccaaaaaac atttaaagga tacgttgctg tattcgtttg catggccacc aaagccatac      5340
     acttagaaat ggtaagcgat ctaacttcag acgcattttt agcagcactc agaagattta      5400
     ttgctagacg gggaaaatgt tccaatatct attcagacaa cggaacaaat tttgtaggag      5460
     ctgcaagaaa attagatcaa gagttattta atgcaataca agaaaatata acgattgcag      5520
     cgcagcttga aaaggacagg attgattggc attttattcc cccggcagga cctcacttcg      5580
     gaggtatttg ggaagctgga gttaagtcaa tgaaatacca tttaaagcgt ataatcggcg      5640
     acactatttt gacttacgaa gaaatgtcaa ctcttttatg tcaaatagaa gcatgcttaa      5700
     attcaaggcc attatacact atagttagtg agaaggacca acaagaagtt ttaacaccag      5760
     gtcatttttt aattggaaga ccacctttag aaatagtcga accaatggaa gatgaaaaaa      5820
     tcggaaattt ggataggtgg agacttatcc aaaaaatgaa gaaagatttc tgggttaagt      5880
     ggaaaagtga atatttgcat acgctccagc aaaggaataa atggaaaaag gaaattccta      5940
     atatagaaga agggcaaata gttttattaa aggatgagaa ttgtcatcct gcaagatggc      6000
     ctttaggaaa ggtggaaaag gtgcataagg ggaatgatga taaggtccga gtggctaaag      6060
     taaagatgca ggaaggatat atcactagac ccattactaa aatttgtccc ttggaaggaa      6120
     taaagtctgt tgacaaaaat gaggctgacc aagagccaaa aagacgaact agagcgacat      6180
     cgggaatgtc caagatcgga atcattatgg caatgttgtt gtttgtgtta agttgtcaag      6240
     tttctagcgc attacctaaa gatatagcac caagatattc tatagacaaa ataaataaaa      6300
     cctcagcaat atatctagac ccgctaggag atgttgagat tgtgagtact tcttggaatt      6360
     tggttatcta ttataaaatg gatccatatt ttaaaatgtt aacaaagggt aatgcgctta      6420
     tacaaagtat gaggaaagtt tgcgaaagac ttcatagctt tgaagagcaa tgtagtctag      6480
     tcttagataa tatgcaaagt cagttatcgg aacttgaaga aaacaataaa ttgtttatga      6540
     tacagtctag atctagaagc aagcgtgctc ctttcgaatt tatgggttcc ttgtatcata      6600
     ttttatttgg tataatggat gaagatgata gagagcaatt agaagaaaat atgaagaatt      6660
     tgttagataa ccagaacaac cttgataaac taattcaaaa acaaacatct gtggttgatt      6720
     caacttctaa tctattaaag agaacaacag aagatgttaa ctccaatttt agaagtatgc      6780
     aaataagaat tgagaacatg acagaagttc ttaaagaaaa ttattatgtt tataaggaat      6840
     caataaaatt ctttatgatt acgaaacagc tacactcatt gattgaagaa ggcgaaaaaa      6900
     ttcaagcagg cattataagc ctgttgattg atattaatca cggtaggcta aatacaaata      6960
     ttctcaggcc aaatcagctt aaaaaagaaa ttgccaaaat tcagcagagt ctttcggaga      7020
     acctagtaat tccaggaaaa cggtcaggta cggaacttaa ggaggtgtat acactgttaa      7080
     cagccagggg tttattcatc gacgataaat tgatcattag tgcaaaagtg cctctgttta      7140
     gcaggcatcc atccaaattg ttcaggctta ttccggtgcc aattcgaaat gaagatcgga      7200
     taataatggt gcatacaacg tccgaatatt taatttataa ttttgagata gattcctatc      7260
     acataatgac ggaagccaca ttaaatcaat gtcagaaatg gcaactaaat aagagaatat      7320
     gcaaaggaag ttggccctgg aattcagcga atgataatgc atgtgagatt cagcctctaa      7380
     agccagataa agcggcgaac tgcatctata aaacagtagt cgactctaaa agttactggg      7440
     tagagttaga aaagaaaagt agttggttgt ttaaggttcc tgcgaattca aaagtccgtc      7500
     tgcaatgtac tggctctcaa attgaattgt ttgatttgcc tcagcaagga gttttaagca      7560
     ttgcgccata ttgtacggca agaaccgacg ataaaattct agttgcccac cataacattc      7620
     agtccgaaag tgaagaatta ttatcaacac cttatatagg agaagttagt gaagcgccga      7680
     agattatttg ggatccgctg aaactatcaa tattaaatca tactgaggaa tttgaacgat      7740
     tgaataatga aattaaattt atgaaagaga accatcaaaa attgaaagat ttacatttcc      7800
     atcatatttc cggacatgct ggattaatta ttgctttaat actaatgata gtattaataa      7860
     tatatttcat acggaaatgt gctgtgcaac aaagaatgca agcaataacc tttgcaggtc      7920
     cgttgccagt actataaata tcaatagtaa ataaacaata aaataatata acaaataaaa      7980
     atatacagtc cactatatcg ttgtttaata gaaaatgtac ttctacatag aaaaagcaaa      8040
     atgtttaaaa taagttaatt gagtacaaat tgttgaatta aaaataatat aaaccataat      8100
     tgtaatccaa taaaattaaa agccagaaaa actaggccca ttgaaatctt agttgcaaaa      8160
     taaatgaaca tatatcaaat aaatacagtc cactactgtt ataaatgcaa ctaatatact      8220
     aatgtacatc tcagctttgc tggccctttg gcagaa                                8256
//
ID   ROO_LTR     repbase;    DNA;    INV; 428 BP.
XX
AC   .
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   14-MAY-2010 (Rel. 15.06, Last updated, Version 2)
XX
DE   ROO_LTR is a long terminal repeat from endogenous retrovirus ROO
DE   - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; BCDPR superfamily; B104; ROO_LTR; ROO_I.
XX
NM   ROO_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Scherer G., Tschudi C., Perera J., Delius H. and Pirrotta V.;
RT   "B104, a new dispersed repeated gene family in Drosophila
RT   melanogaster and its analogies with retroviruses.";
RL   J. Mol. Biol 157(3), 435-451 (1982).
XX
RN   [2]
RP   1-428
RA   Kapitonov V.V. and Jurka J.;
RT   "ROO_LTR.";
RL   Direct Submission to Repbase Update (30-JUN-1999).
XX
DR   [2] (Consensus)
XX
CC   There are more than 100 copies of ROO_LTR in the D.melanogaster
CC   genome.
XX
SQ   Sequence 428 BP; 129 A; 87 C; 84 G; 128 T; 0 other;
     tgttcacaca tgaacacgaa tatatttaaa gacttacaat tttgggctcc gttcatatct        60
     tatgtaaatg aatcgagagc gataaattat atttaggatt ttgttatcta aggcgacatg       120
     ggtgcattgc tcaaaaacat gtaatttaag tgcacactac atgagtcagt cacttgagat       180
     cgttccccgc ctcctaaaat agtcccttag tgggagacca cagataaggt cctcgccgct       240
     caagataggc agatgtgccc gagcgtggga cctcgataag gcggggacta tttacttagg       300
     cctctgcgta ggccatttac tttaagatgc gattctcatg tcacctattt aaaccgaaga       360
     tatttccaaa taaaatcagt ttcttacaaa aactcaacga gtaaagtctt cttatttggg       420
     attttaca                                                                428
//
ID   ROVER_DM    repbase;    DNA;    INV; 7561 BP.
XX
AC   .
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   Drosophila melanogaster LTR-retrotransposon rover, complete
DE   sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag domain;
KW   env domain; pol domain; ROVER_DM.
XX
NM   ROVER_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7561
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler D.A. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol 3(12), RESEARCH-RESEARCH (2002).
XX
RN   [2]
RP   1-7561
RA   Bao W.;
RT   "Updated with consensus.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   pos 1-376 and pos 7186-7561 are LTR region.
XX
FH   Key           Location/Qualifiers
FT   CDS           1443..2693
FT                 /product="ROVER_DM_1p"
FT                 /translation="MATASPIILSDSNMSQVERQINAVEIFNGDPNTLHTF
FT                 ITRIDFILALYQTTDERQKLIIYGHIERNISGDVIRTLGTNNFTSWIELRT
FT                 RLILYYKPQAPSHQLLEDFRNIQYKGNIRQFLEEAEKRRQVLMSKLELENN
FT                 SAETALFTRLIQDSIENLILKLPNHIHLRIVNCQIPDLRSLINILQEKGLY
FT                 EPQTLNKDNFKPAPNSNRTPNNLPNRQVNGQNKPITPFQPYHNNVFQPYYP
FT                 PYPYAPIHTPRPNQTPFPQYQPRPTYPQPNIPRPNPVFNRQNIFDQNRFGP
FT                 NQTYTPNNFPPTGNTQTNNPVKRQRPSDSGQTKMSIEELRYQEMVSNQPEY
FT                 PYHYYYPYYPDNFQPQPYPYQMGYIPDPTQIPFEQDHDTSDKTQQEQTAPN
FT                 DDESDNTKEAENFRLVAPDQTNI"
FT   CDS           2756..5821
FT                 /product="ROVER_DM_2p"
FT                 /translation="MLTWNIFETPIQQTNHLIHTSNGSVTINETTTIPPNN
FT                 YFPIAQEFLIHKFSDHYDMLIGRKLLSKAKAIIDYQKKTATLFNKVYKIKD
FT                 TEKLTDQNHAQVDSSFPQDPTFLETSTLQENLFRLNHLNAEEKYKLTNLLT
FT                 RFKDIQFHEGDKLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQ
FT                 EMLEQGIIRESNSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDR
FT                 YPMPNIDEILGKLGRSNYFTTIDLAKGFHQIEMDSESIAKTAFSTKYGHYE
FT                 YTRMPFGLKNAPATFQRCMNNLLRPLLNKNCLVYLDDIIVFSTSLEEHLQS
FT                 LEAVFEKLSQANLKLQLDKCEFLRQETTFLGHVITKDGIKPNPEKIKAIQD
FT                 YPLPSKPKEIKAFLGITGYYRKFIPNFSDIAKPLTKCLKKGVKIDTKHKEY
FT                 IEAFQKLKLLISEDPILKIPNFERKFVLTTDASNVALGAVLSQDGHPISYI
FT                 SRTLNEHEVNYSAIEKELLAIVWATKTFRHYLLGRHFEIASDHQPLCWLHK
FT                 LKEPNSKLTRWKIRLSEYDFDIKYIKGKENHVADALSRIKIEQAFFGESTQ
FT                 HSAEEDNSDLIGLSEKAINYHKRQIIFSKGPNSSIEHETYFKKQIIHISYK
FT                 EMTLEAAKQYLLNHFCSKNSALYIESDADFEMIQNAYTTTMNPKCTKIFRS
FT                 LVLLKNIPTYASFKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQN
FT                 IINECQVCNLAKTEHRNTEMPMKITPKPEHCRDKFVIDIYSSEGNHYLSCI
FT                 DIYSKFATLEQIKTKDWVECKNALMRIFNQLGKPKLLKADRDGAFSSLALK
FT                 RWLETEEVELQLNTTKTGVADIERLHKTINEKIRIIKNSDDNETKLSKIET
FT                 ILYIYNHKTKHDTTGQTPAHIFIYAGQPNLDTQNNKEKKINEINKNRTEYN
FT                 VDTRYRKGPLQKGKLEAPFKLTKNVEQTDEDHYKITNRNRETHYYKTQFKK
FT                 QKKTNQLPILQAPCSP"
FT   CDS           5850..6806
FT                 /product="ROVER_DM_3p"
FT                 /translation="MPSPATQINNIDTDHGYLLFSDKPIQIPSEYEHHCLR
FT                 INLLDIDNLTHYFNTKVTNYTHIPQIKLLHNKMLRELNAITLHQTNRQKRG
FT                 LINIMGSAFKYLFGTLDNNDRIQIHNQLESATNNSINIHEMSDIIQLINSN
FT                 MQKIKEFEDEHNNREQMLYELIQFTEYIEDIAMGMQLSRLGLFNPKLLNYD
FT                 KLENVDSSNILQTKTSTWINTNQLLIIAHIPTKQKTIHTINIIPYPDNNGY
FT                 QLDHIDKDTYFEEQDKIYNQNYQEINNECIKNIIKRTNPICNFVPITVEQI
FT                 IKYVEPNSIITWNLNNTIIEQKLPRNK"
XX
SQ   Sequence 7561 BP; 3107 A; 1653 C; 995 G; 1805 T; 1 other;
     agtaacataa tatgcttctc atattacgtt tacatactta cactaattgt acatacaatc        60
     ttgcacatgc ataaacacat gaaaccagtt tacattttta cttacactta agcgcataat       120
     ttgttgtgca tccataccgt tatttttccg ttcttttttg tacacatata ctgattagac       180
     attcccgttt ctcgcgactc acttcgagcc gatcaaaaac tctgtacagt cagtcttaag       240
     ccgacaacga agaaataaag atctaaacta aaaaatacct cgtgttgatt ctttcaaatc       300
     cgaaacttct ttaaaggcgt tgatcttagt caaacgacgg atcatttgtt cgactcgaat       360
     agtaaaatac gtaagtggcg cagtcggtag gataatacat tgttgatgcg atagtaaccc       420
     tattcaattc ttcaattatt atccacaaaa gaactaacgc agtcgcgtcg tgctaagtgg       480
     aaagtgttaa ccaatggtac tcaatcccat aaagtgacca cgaagtgaaa taacttaaaa       540
     ttacaaaaaa ttttaagaag acgcctttga attcgctgag tagtaaatcc acaaaaggtt       600
     actcaaacca aagcgaaaca gctaagagcg caacacaaca aacttaaatt aaaaacttac       660
     aaataagtga ataacagaaa tattacgaac aaataagtgc gaaaattcaa caaaacctaa       720
     gctaaagaac tataactaag tgaataacaa acattataag tgaattaaat taataagtga       780
     acaacacaac aaacttaaat taaaaactta caaataagtg aataacagaa atattacgaa       840
     caaataagtg cgaaaattca acaaaaccta agctaaagaa ctataactaa gtgaataaca       900
     aacattataa gtgaattaaa ttaataagtg aacaacacaa caaacttaaa ttaaaaactt       960
     acaaataagt gaataacaga aatattacga acaaataagt gcgaaaattc aacaaaacct      1020
     aagctaaaga actataacta agtgaataac aaacattata agtgaattaa attaataagt      1080
     gaacaacaca acaaacttaa attaaaaact tacaaataag tgaataacag aaatattacg      1140
     aacaaataag tgcgaaaatt caacaaaacc taagctaaag aactataact aagtgaataa      1200
     caaacattat aagtgaatta aattaataaa tgaacaaaca caaacacaaa gctcagacct      1260
     ggaatacaaa ctaatagtgg aaatcaagaa cccatagtga aaaccaaaac cctatccaaa      1320
     acataaacct acagtaaaaa cttgaacttt atcgaaaaac gaaacctatc cgaaactgca      1380
     aaccttaccc agaacgtgaa ccttacctaa aacattaaat aacaataaat acaacaacaa      1440
     caatggcaac agcaagccct ataatactat ccgactcaaa tatgagtcag gtcgagagac      1500
     agataaatgc tgtcgaaatc ttcaatggag acccgaatac tctacatacc tttataactc      1560
     gcatcgactt cattctggcc ttataccaaa ctactgacga aaggcagaag ttgataattt      1620
     atggacacat cgaacgcaat atcagcggcg acgtcatccg tactctcggg accaacaact      1680
     ttaccagctg gattgaacta aggaccagat tgatcctata ttacaaaccc caggcaccga      1740
     gtcatcaact tttggaggat tttcggaaca ttcaatacaa aggcaacatc aggcagtttc      1800
     tggaggaagc cgagaaaaga cgacaagttt taatgagtaa gttagaacta gaaaataact      1860
     cagctgaaac cgccttattt accagactta ttcaagatag catagaaaac ttgatcctaa      1920
     aactccctaa ccatattcat ctaagaatag ttaactgcca aatccccgat ttaagatccc      1980
     ttattaatat cttacaagaa aagggtctat atgaacctca aacattaaac aaagataact      2040
     ttaagccagc tcctaattct aataggacgc caaataactt accaaataga caagttaatg      2100
     gccaaaataa acctataaca ccttttcaac cgtaccataa caacgtcttt caaccctatt      2160
     atccaccata cccatacgca ccaatccata cacccaggcc caatcaaacc ccttttcccc      2220
     aatatcaacc aagaccaacc tacccacaac ctaacatacc cagaccgaat cctgtcttta      2280
     atcgacagaa tatcttcgac caaaatcgtt tcggacctaa tcaaacttac acaccgaata      2340
     acttccctcc aactgggaac acacaaacca acaacccggt aaaaagacaa cgaccatcag      2400
     acagcggaca gactaaaatg agcatagaag aactaagata ccaagaaatg gtatcaaacc      2460
     aacccgaata cccttaccat tattactatc catactaccc agataacttc caaccacaac      2520
     catatcctta tcaaatgggt tatatcccag acccaactca aatccctttc gaacaagatc      2580
     atgacacttc ggacaaaaca caacaagaac agacagcacc aaacgatgac gaatcagaca      2640
     ataccaaaga agcagaaaat tttcggctag ttgccccgga tcaaaccaat atataattat      2700
     taaacataat gacatagact taaagtgcct aattgacact ggatccacca taaacatgct      2760
     tacttggaac attttcgaaa cacctataca acaaaccaac cacctaattc atacaagtaa      2820
     tggmtcggta actattaacg agaccaccac tataccaccc aataactact ttcctattgc      2880
     tcaggagttt ctaattcaca aattctcaga tcattatgat atgctgattg gacgcaaatt      2940
     gttgtctaaa gctaaagcca taatagatta tcaaaagaaa actgccaccc tcttcaacaa      3000
     agtctataaa ataaaagaca ctgaaaaact tacagaccaa aatcatgctc aagtagactc      3060
     ttcgttccca caagacccta cctttttaga aacctccaca cttcaggaga atctgttccg      3120
     actaaaccat ttaaatgcag aagaaaaata caaattaaca aacttactga caagattcaa      3180
     agacattcag tttcacgagg gcgacaaact tagcttcaca aaccaagaaa aacatacaat      3240
     taataccaca cataatattc cagtttactc taaaatgtat agcttccaac aatcatacga      3300
     acaagaagta gaaagacaaa ttcaagaaat gttagaacaa ggcatcattc gagaaagcaa      3360
     ctcaccgtac tgcagcccca tctgggtagt accaaaaaaa ttagatgctt ccggacagca      3420
     gaaacttcga atagtcatag actacaggaa gctgaatgaa ataacaataa atgaccgata      3480
     ccctatgcca aatatagacg aaatactagg aaaattaggg aggtctaatt actttaccac      3540
     catagacctg gcaaaaggct tccatcaaat agagatggat tcagaatcaa tagccaaaac      3600
     ggctttctct actaaatacg gacattacga atatactaga atgccatttg ggcttaaaaa      3660
     cgccccagct accttccaac gctgcatgaa taacctactt cgtccgcttt taaataaaaa      3720
     ttgtttagta tatctagacg atatcattgt cttttctacc tctctagagg aacaccttca      3780
     atcccttgaa gcagtcttcg agaaattatc tcaagccaac cttaaactac agctagataa      3840
     atgtgaattc ctaagacaag aaactacctt tctaggacac gttatcacta aagacggaat      3900
     taaaccaaat cccgaaaaaa tcaaagctat acaagattac ccacttccat ctaaacctaa      3960
     agaaattaaa gcattccttg gaatcacagg atactacagg aaattcatac ccaacttctc      4020
     tgacatagcg aaaccactga ctaaatgtct caaaaaggga gtaaaaatag atacaaaaca      4080
     taaagaatat atagaagcat ttcaaaaatt aaaattactt atttccgaag accccatatt      4140
     aaaaatacca aattttgaaa gaaaatttgt attaacaact gacgcaagca atgtagcatt      4200
     aggtgctgtt ctatctcaag atggacatcc cattagctac attagcagga ccctaaacga      4260
     acatgaagtt aattacagtg ctatagaaaa agaactacta gcaatagttt gggccacaaa      4320
     gacctttaga cactacctgt taggacgaca tttcgaaata gcttctgacc atcaaccatt      4380
     gtgctggcta cacaaattaa aagaacctaa ctcaaagctg actaggtgga agattagatt      4440
     atccgagtac gacttcgata taaaatatat caaaggaaag gaaaaccatg tcgcagacgc      4500
     actgtctaga atcaaaatag aacaagcatt tttcggagaa tctacgcaac atagcgcaga      4560
     agaagataat agcgacttaa tagggttgtc cgaaaaagcc attaattacc ataaaagaca      4620
     aattattttc tcaaaaggtc ccaatagtag tatagaacac gaaacttatt tcaaaaaaca      4680
     aatcatacac atttcctaca aagaaatgac cctagaagca gccaaacaat atctactcaa      4740
     tcacttttgc tcaaagaata gcgctcttta catcgaaagc gatgcagact tcgaaatgat      4800
     ccaaaatgca tacacaacaa caatgaatcc gaaatgtaca aaaattttcc gaagcctcgt      4860
     tttattaaaa aacatcccta cttatgcaag ttttaaggaa ctaattctaa acacccacga      4920
     aaagctctta caccccggaa ttcaaaaaac tgtaaaactc tttagtgaga attattactt      4980
     ccccaatagc caactcctta tccagaatat aatcaacgaa tgtcaagtct gcaacctagc      5040
     caaaacagaa caccgtaaca cggaaatgcc aatgaaaatt acccctaaac ccgaacattg      5100
     tcgtgataag ttcgtaatag acatctattc ttccgaagga aaccattatc tgagctgtat      5160
     cgatatttac tctaaattcg ccacccttga acagattaag acaaaagact gggtagaatg      5220
     caaaaatgcc ttaatgcgca tatttaatca attagggaaa cctaaacttc tcaaagcaga      5280
     tcgagatggt gcattctcca gcctagccct caaacgttgg ctcgaaaccg aagaagtaga      5340
     gttacaactt aatactacaa aaacaggtgt cgctgacata gagagactcc acaaaactat      5400
     aaacgaaaaa atccgcatca taaaaaactc tgacgacaac gagaccaaat taagtaaaat      5460
     agaaacaatc ctttacattt acaaccacaa gaccaaacac gatactaccg gacaaacccc      5520
     tgctcacata ttcatttacg ccggacaacc taacttagat acacaaaaca ataaagaaaa      5580
     aaaaattaac gaaataaata agaatagaac tgaatataat gtcgacacca gatacagaaa      5640
     aggaccatta caaaaaggaa aattagaagc ccctttcaaa ttaacaaaga acgtcgaaca      5700
     aaccgacgaa gaccattaca aaattactaa cagaaacaga gagacacatt actataagac      5760
     ccaatttaaa aaacagaaga aaactaatca actccccatt ttacaggccc cttgttcacc      5820
     ataatacttt ttcttactct tacaaaacta tgccaagccc agcaactcaa ataaacaaca      5880
     tcgacaccga ccacggatat ctcctattct ctgacaaacc tattcaaatc ccttcagaat      5940
     acgaacacca ctgtctccgc ataaacctct tggatataga caacctaact cactatttta      6000
     acactaaagt aaccaactat acacatatcc cccaaattaa acttctacac aataaaatgt      6060
     taagggaact taacgctata acgttacacc agacaaatag acagaaacgc ggactaatca      6120
     acataatggg atctgcattt aaataccttt tcgggacact agacaataac gaccggatac      6180
     aaattcataa ccaattagag tccgcgacaa acaactcaat taacatacac gaaatgagcg      6240
     acataattca acttatcaat agtaacatgc aaaagatcaa agaatttgaa gacgaacata      6300
     ataacagaga acaaatgcta tacgaactaa tacaatttac cgaatacatt gaagacatcg      6360
     caatgggaat gcaactctca cgactaggac tgtttaaccc aaaattactt aactatgaca      6420
     aattagaaaa cgttgacagt agcaacatac tacagactaa aacctcaacc tggatcaaca      6480
     ctaaccaact acttatcata gctcatatcc ctactaaaca aaaaaccatt catactatta      6540
     acataatacc ctatccagat aataatggct atcaacttga tcatatagac aaagacactt      6600
     atttcgaaga acaagataaa atttataacc agaactatca agaaattaac aacgaatgta      6660
     tcaaaaatat tattaagaga acaaatccaa tatgtaactt tgtccctata acagtcgaac      6720
     aaataattaa gtatgtagaa ccaaatagta tcatcacttg gaatctaaac aacactatca      6780
     tagaacaaaa attgccaaga aataaataaa aatgtaacgg ttaacggcaa caaaataata      6840
     acaataaaac aatgtaaaat caaaatagga aacataatac ttaacgaaaa caagctaaaa      6900
     accccgagat aaaccttacc ccattgtaca cacccttaag cctaataaaa ataaaaccaa      6960
     tagaacataa ggacattgta caattaatat caaataataa tatcacagtt tgtatagtag      7020
     tatcaatcat aagcctcaca tcttgtattg cttgtattta cttaaaacta aaaaacaaaa      7080
     taatcattga atcacaagat gcaaatccaa ctgcatcacc aagattgcgg gcatcaacac      7140
     caatagaagg agtggaagca taagcttccc ttttaaaggg agggaagtaa cataatatgc      7200
     ttctcatatt acgtttacat acttacacta attgtacata caatcttgca catgcataaa      7260
     cacatgaaac cagtttacat ttttacttac acttaagcgc ataatttgtt gtgcatccat      7320
     accgttattt ttccgttctt ttttgtacac atatactgat tagacattcc cgtttctcgc      7380
     gactcacttc gagccgatca aaaactctgt acagtcagtc ttaagccgac aacgaagaaa      7440
     taaagatcta aactaaaaaa tacctcgtgt tgattctttc aaatccgaaa cttctttaaa      7500
     ggcgttgatc ttagtcaaac gacggatcat ttgttcgact cgaatagtaa aatacgtaag      7560
     t                                                                      7561
//
ID   RSAI        repbase;    DNA;    INV; 151 BP.
XX
AC   M32422;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   G.morsitans centralis RsaI repetitive sequence.
XX
KW   RSAI; RsaI repetitive sequence.
XX
OS   Glossina morsitans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Hippoboscoidea; Glossinidae; Glossina.
XX
RN   [1]
RP   1-151
RA   Trick M. and Dover A.G.;
RT   "Unexpectedly slow homogenization within a repetitive DNA family
RT   shared between two subspecies of Tsetse fly.";
RL   J. Mol. Evol 20, 322-329 (1984).
XX
DR   GenBank; M32422; Positions       1     151.
XX
SQ   Sequence 151 BP; 45 A; 36 C; 31 G; 39 T; 0 other;
     actacaggtc catgacaaac tcgcccaatg tgctgcacgt agcatttgat gaaccacagc        60
     aagctattag aatgcgcggt atgctaaatg ttgcttttga tacagaacaa cgatttcaga       120
     atttgttgta acggctctca gcaccacacg t                                      151
//
ID   RSP         repbase;    DNA;    INV; 118 BP.
XX
AC   M21213;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   D.melanogaster Rsp repetitive element.
XX
KW   Satellite; Simple Repeat; Repetitive element; RSP.
XX
NM   RSP.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-118
RA   Wu I.C., Lyttle W.T., Wu L.M. and Lin F.G.;
RT   "Association between a satellite DNA sequence and the Responder
RT   of Segregation Distorter in D. melanogaster.";
RL   Cell 54(2), 179-189 (1988).
XX
DR   GenBank; M21213; Positions    1110    1227.
XX
SQ   Sequence 118 BP; 42 A; 22 C; 19 G; 35 T; 0 other;
     ccttctacag attatttaaa cctggtacac aaaaacaata aattgactaa gttatgtcat        60
     tttagcggtc aaatgagtga tttttcgatt tcaagtacca ggcgaacaga agacacct         118
//
ID   RT1         repbase;    DNA;    INV; 8037 BP.
XX
AC   M93690;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   Anopheles gambiae RT1 retroposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; Nucleic acid binding protein; retroposon;
KW   RT1.
XX
NM   RT1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-8037
RA   Besansky J.N., Paskewitz M.S., Mills-Hamm M.D. and Collins H.F.;
RT   "Distinct families of site-specific retroposons occupy identical
RT   positions in the rRNA genes of Anopheles gambiae.";
RL   Mol. Cell. Biol 12, 5102-5110 (1992).
XX
DR   GenBank; M93690; Positions      18    8054.
XX
FH   Key           Location/Qualifiers
FT   CDS           2482..4266
FT                 /product="RT1_1p"
FT                 /translation="MSGLGGDAHPQGSSGRVLRPRARSVSLNRVDALKVSD
FT                 STPVEPPPTAGIVYLSDDEEEELNCTILAGPSGLAVPPMGKVPLVVLDKLP
FT                 SQSQQREEMTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVAQLSKELS
FT                 LCRKELQESLMKNAALERELETYRMGARSVIELQQQAAAAPMMTAQGAHSS
FT                 RNRRGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQRE
FT                 WQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELW
FT                 TTVVRRRQNTQQQQQSNQPQQQQQQTGRYQPPQMRQQLQQQQQQRQPQRYV
FT                 VAGSSQQQQQQHQQQQQKRKRPKPELIEISPGQNETFESVSLKIRKAVDDN
FT                 GTHKELKDFIIMGRRTDKALLRLTLARSANATLILQQIRTIIGEAGTCRHV
FT                 TEMAALVVNDIDPLAKEEELTALLENKIEGGAGIVSTSIRTMPDGTQRARV
FT                 RLPAKAAKALDGTKLRLGFCISRVKMAPPTPKEHLRCYRCLEHGHNARDCR
FT                 SPVDRQNVCIRCGQEGHKAGTCMEEIRCGKCDGPHVIGDRTCDRSATQ"
FT   CDS           4185..7730
FT                 /product="RT1_2p"
FT                 /translation="MHGRNTLRQMRWPPCYRGPDMRSVGHPMTQLKVLQVN
FT                 LGGGRIAQDLVLQTARQMEVDVLVLSHTYRPPENNPRWAVDASKKVAVVAT
FT                 GRYPLQGQWSSDVPGLIAAKVGGITFLSCYAPPSLSREGFAEFVEAIELEA
FT                 QSHPQVVVAGDFNAWHEEWGSRRSNERGEVLLEASQQLGLLLMNRGNVATF
FT                 VGNGVATASVVDVTFASSSIAQPSTWLVRNTDTRSDHRYITYSVGPASADQ
FT                 QRNQGQSRQRGQRERFQHAGTRFKTKQFSKENFLATLHGEGFREKAVNHQG
FT                 MISAMISACEKTMQRMTSSFPDPHRDVYWWTPLIALLRQNCEQTRDRMQQT
FT                 SDLQNRSLAAAQYRTAKAELDRAIRASKKAAFQELIDAAEENVFGAGYLVV
FT                 LSRLRGGRAPPETERARLESIVTELFPQHPPFNWPSISSEEEQEQPADQQT
FT                 PWTQVTIPELRLIASTMPNKKAPGLDGIPNAAVKAAILAYTDVFQALYQSC
FT                 LETATFPAPWKRQRLVLLPKPGKPPGSNGSYRPLCMLDALGKVLEKLILNR
FT                 LHNHLEDPAAVRLSDRQHGFRRGRSTIGAIRTVIEAGQSAMRFRRTNGRDN
FT                 RFLLVVSMDVKNAFNTASWQAIATALQMKGVPAGLQRIVRSYFENRELVFE
FT                 TSDGPVTRSITAGVPQGSILGPTLWNTMYDGVLDVALPQDCEMVAYADDLV
FT                 LLIPGIDVNAVKAAAEEAVASVSHWMAQHHLQIAPEKTECVLISSTKNPTQ
FT                 VTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHVREVTTRARKIADAVTRLL
FT                 RNHSGPKTSKARLLASVAESVIRYAAPIWHGEVTKRECRRLLERVQRVSAR
FT                 RVARTFRTVRYETATLLAGLTPICLLIEEDARVFERVNDPGRSITKAAIRL
FT                 EERQRTITMWQSQWDAEADTSRYTRWTHRIIRDISAWQGRRHGEMTFHLAQ
FT                 VLSGHGFFREYLAINGFTESPDCRSCAGVPENAHHAIFECPRFARVRMEYF
FT                 GELGPNPVTPDSLQDFLMGSQDNWSSFCEAARRITTTLQRDWDTEREQRAA
FT                 SNREEAEIQQQLQREEDERRTEERRQLHNEANRAYRQRNRRSQPTPPAPPP
FT                 TPREAARLEDGRRRVARWRERQRMIRNGGIQMLRALFGHDAWSSESDDEPD
FT                 DVERGGLDAAQQAAAAEAERAAR"
XX
SQ   Sequence 8037 BP; 2175 A; 1995 C; 2212 G; 1655 T; 0 other;
     agtgtcaaac gtgaggtcgt actgtaccga cacgttgtgt ttgggctccg aaaaaaggac        60
     ttaaaaacag tgcaaaatcg tcgttaatcg actttaatag tgtgaaaaac gtgctcaggg       120
     cacctgattt accctttaag agcgttatca agtgttttta aggcgaaaat tcaacaaaaa       180
     tcgtgcattt gtgtttgttg cctatgaacc ccccaccatg tgtttgtgtg acatggtgta       240
     aaagcagaaa atcgaaaaaa gtgcccaaaa agtgccagaa ttgcacgatt ttagtgtaaa       300
     cagtgcatct gagcacgaaa aaaggtgtta agaagtgatc cgcgcatgaa aaaaccacaa       360
     aattgtgaaa aaaaagtttt gcgtcatcca gcccatactg ggccaagtaa tcgccggatc       420
     tgtgttttca gcgatataat ttgcccagat tctcgccggg tgtggttttt aaggccatcg       480
     ggtggccaaa gaacgttcat ccagtgaaaa ccgatcgaaa atcggccgtt tgtgaccgaa       540
     aaaaagtgaa ataatattta atattattcg gtgaacaaat ttacgaaaat tcggttccag       600
     gtgaaattgg gtgaaattgg gtgggttgac tgtacggccc ctgatggccc ctgagttaag       660
     gtgccgttac acgagtaacc atagtttagg tgaccatcga cgtgcggaaa atttttgtga       720
     catcggccta ttgcgaatgc tcaccgtgtg tttgtgtgac gtggtgcaaa agaagaaatt       780
     cgaaaaaagt gcccaaaatg tgcctgagtt gcactatttt agtgtaaaca gtgcatctga       840
     gcacgaaaaa aggtgttaag aagtgatccg cgcatgaaaa aaaccacaaa attgtgaaaa       900
     tagttttgcg tcatccagcc catactgggc caagtaatcg ccggatctct gtttgcaggg       960
     atataatttg cccagattct cgccgggtgt ggtttttaag gccatcgggt ggccaaagaa      1020
     cgttcatcca gtgaaaaccg atcgaaaatc ggccgtttgt gaccgaaaaa aagtgaaata      1080
     atatttaata ttattcggtg aacaaattta cgaaaattcg gttccaggtg aaattgggtg      1140
     ggttgactgt acggcccctg acggcccctg agttaggcat cggttgtcaa acggcctgac      1200
     agctcggacg gaccgatcgt taaggtgccg ttacacgagt aaccatagtt taggtgacca      1260
     tcgacgggcg gaaaatgttt gtgacatcgg cctattgcga atgctcaccg tgtgtttgtg      1320
     tgacgtggtg ctaaagaaga aattcgaaaa gtgcccaaaa tgtgcctgag ttgcactatt      1380
     ttagtgtaaa cagtgcatct gagcacgaaa aaaggtgtaa agaagtgatc cgcgcatgaa      1440
     aaaaccacaa aattgtgaaa aaagttttgc ggtcatccag cccatactgg gccaaggttt      1500
     cgccggatct ctgttttcag cgatataatt tgcccagatt ctcgccgggt gcggttttta      1560
     aggccagcgg gtggccaaag aacgttcatc cagtgaaaac cgatcgaaaa tcgcccgttc      1620
     tgtgaccgaa aaaagtgaaa taatatttaa tattattcgg ggaacaaatt tatgaaaatt      1680
     cggttccggg tgaaattggg tgggttgact gtacggcccc tgacggaccg attgttaagg      1740
     tgccgtcaca cgagtaacca tagtttaggt gaccatcgac gtgcagaaaa tttttgtttt      1800
     tttttgtgac atctgccaat tgcgaatact caccgtgtgc ttgtgcgacg tggtgcaaaa      1860
     acagaaattc gaaaaaagtg cccaaaatgt gcctgagttg cactatttta gtgtaaacag      1920
     tgtatctgag cacgaaaaaa ggtgtgacat cagtttgaca gctaagcaga ggaatttcaa      1980
     agtggcataa cttcggcacc cgccaagcta tcccgacggg aaagtgttgc ctgtggaagc      2040
     ggtatcgaaa tctttcaggg cagggtgaaa tatttcactt tggaaatatt tcacattttg      2100
     aatttttttt tttttttttt tttttttttt tttttttttt tttttttttt tttttttttc      2160
     ttctcttcaa aaaaaaacca tcttccatgt gcgcgggcgt caggcagagt gcgtcgggct      2220
     gccatcaaac cctcaagtag gtgcgcgttt gtgaaagcgg ccctgaaatc tttcagggag      2280
     ggtgaaatat ttcacttttg aaatatttca aaatttgaaa tttttcaaca tttcaaaaat      2340
     ccgttctcca tcggttttct tgacgaacct aaaaccgggg gtcggtttct gacgcctcgt      2400
     tggcgagagt gcgggcgtta ggcatagtgc gtcgggctgc caacaaaccc tcaagtaggt      2460
     gcgcgcaacg ttgaaaccaa catgtcgggg ctgggcggtg atgcccatcc ccaagggagc      2520
     tcgggacgag tacttcgccc gagggctcga tcggtgtccc tcaaccgggt cgacgcatta      2580
     aaagtgtctg actcaacacc ggtggagcca ccacccaccg caggcatcgt ctacttgagt      2640
     gatgatgaag aagaagaatt gaactgcacg atcctcgcgg gcccgtcggg attagcagtt      2700
     ccaccaatgg ggaaggtgcc attggtagtg ctggacaagt tgcccagcca gagtcaacag      2760
     cgcgaggaga tgacggtacc ggccacctca acaccaaagg ctggtaagtg ttcttctgct      2820
     gaaccatctc tctcagagat gaacgagagc ttgaagctcc tggccatgca ggttgctcag      2880
     ctctcaaagg agcttagcct ctgccgtaag gagctccagg aaagtttgat gaaaaatgcg      2940
     gcgcttgaac gggagctcga aacgtacagg atgggcgccc gttcggtcat cgagctgcag      3000
     cagcaagcag cagcagcccc aatgatgaca gcccagggag cccacagctc tcgcaaccgt      3060
     cgcggtcgcc aaggaccaca gcagcaggag cagcggcagc agcagcaaca gcatcagcag      3120
     cgggaacagc agcagcagca gcagcagcag cagcagcagc agcagcagca acaacaacag      3180
     cagcagcgga accagcagcg tgaatggcag cagcagcagc agcagcagca gcatcaacag      3240
     cgagaacagc agcagcagca acgggtgcag caacagaatc agcagcacca acgtcagcag      3300
     cagcagcagc agcagcagcg gcaacagcaa cagcagcagg agcagcaaga attatggacg      3360
     acggtagtgc gccgccgtca aaatacacag cagcagcagc agtctaacca accgcagcaa      3420
     caacaacagc agactgggcg gtatcagccg ccgcaaatga ggcagcagct acagcagcaa      3480
     cagcagcaac gacagccaca gcgatatgtg gtcgcaggct cgtcgcaaca gcagcagcag      3540
     cagcatcaac agcagcagca gaagcgtaag cgtcctaagc ccgaactgat agagatctct      3600
     cctggtcaga acgagacttt cgagagcgtc tccttgaaaa tccgtaaagc cgttgacgat      3660
     aatggcacac ataaggagtt aaaggatttc atcatcatgg gccggcgcac agataaggcg      3720
     ttgctacgac tgacgcttgc tagatccgca aacgcgacct taattctcca gcagatccga      3780
     acgatcatcg gcgaggctgg aacttgtcga cacgtgacgg aaatggcggc cttggtagta      3840
     aacgacatcg accccctagc caaggaggaa gagcttacag ctctccttga aaacaagatc      3900
     gagggtgggg caggcatcgt ctcaacgagc attaggacaa tgccggatgg cacccagcgg      3960
     gcacgcgtcc gtctgccagc caaggccgcc aaagcgctgg atggtacgaa gcttcgcttg      4020
     ggcttctgca tttccagagt gaagatggct cctccaacac ccaaagagca tcttcgctgc      4080
     taccgatgcc ttgagcacgg ccacaacgcc cgcgattgtc ggtcacctgt agaccgacaa      4140
     aatgtttgca tccgttgcgg acaggaaggt cacaaggctg gtacatgcat ggaagaaata      4200
     cgctgcggca aatgcgatgg cccccatgtt atcggggacc ggacatgcga tcggtcggcc      4260
     acccaatgac gcagctaaaa gtcctccaag tgaacctggg tggaggcagg atcgcccaag      4320
     atctggtcct gcaaaccgcc cgacaaatgg aagtggacgt gctggttctt tcccacacgt      4380
     atcgaccacc cgagaacaac ccaagatggg cagttgatgc ctccaaaaag gtggcagtcg      4440
     tggccacagg acgataccct ctacaaggac aatggagcag tgatgttcca ggccttatag      4500
     ctgccaaggt gggtggcatc accttcctaa gctgctacgc gccacccagc ctgtcgcggg      4560
     aaggatttgc ggaattcgtt gaagcaattg aattggaagc ccaatcccac cctcaggtag      4620
     tagttgccgg agactttaac gcttggcatg aggagtgggg aagccgacgc agcaatgagc      4680
     gtggggaagt actgctcgag gcgtcccagc aattgggcct gctgctgatg aatcgaggga      4740
     atgtggcaac ctttgttgga aacggtgtgg cgactgccag cgttgtcgac gtgaccttcg      4800
     ccagctcgtc catagctcag ccgagcactt ggttggtaag aaacacggac acgcgatctg      4860
     accataggta tatcacctat tcggtaggcc cagcgtcagc agaccagcag cgtaaccaag      4920
     gacagtcacg tcaacggggc cagcgagagc gttttcaaca tgcaggcacg cgatttaaga      4980
     cgaaacagtt ctcgaaagag aatttcctgg ccacgctaca tggcgaggga ttccgagaga      5040
     aggcagtcaa tcaccaggga atgatctcgg caatgatatc ggcctgcgag aaaaccatgc      5100
     aaaggatgac gtcgtctttc cccgaccctc atcgggacgt ttactggtgg acgccactga      5160
     ttgctctgct taggcaaaac tgcgagcaga cgagagatcg catgcagcag acaagtgatc      5220
     tccagaaccg aagtctggct gcagcccaat accgaacagc taaagctgag ctggatagag      5280
     ctatacgtgc cagcaaaaag gccgccttcc aggaattgat cgatgctgcg gaggaaaacg      5340
     ttttcggagc cgggtactta gtagtcctct cccgtcttcg cggtggaagg gccccacccg      5400
     agacggagag agcgaggctt gaaagcatcg ttacagagct tttcccgcaa catccgccct      5460
     tcaactggcc cagcatcagt tccgaggaag aacaggaaca gcctgcagac cagcagactc      5520
     catggaccca agtcacgatc ccggaactcc gtctgatagc tagcaccatg ccgaacaaaa      5580
     aagcgccggg ccttgacgga attccgaacg ccgctgtcaa ggctgcaatc cttgcgtaca      5640
     cggacgtttt ccaggcgttg taccaaagct gtctggaaac ggctacattt ccagcaccat      5700
     ggaaacgaca gcggttggta ctgctcccca agccggggaa accaccgggt agcaacgggt      5760
     cataccgacc tttgtgcatg ctggatgcct tagggaaagt gctggagaag ctcattctaa      5820
     acagacttca caaccacctg gaagatcctg ctgcggtgag gctgtcagac aggcagcatg      5880
     gcttccggag ggggcgatct acaattggcg ccattcgaac agtgatcgag gctggtcaga      5940
     gcgcgatgag attccgccgc acgaacgggc gggataacag gttcctgctg gtcgtgtcaa      6000
     tggatgtcaa gaatgccttc aatacggcaa gctggcaggc catcgccact gcactgcaga      6060
     tgaaaggagt acctgctggt ctgcaaagaa tcgtgaggag ctacttcgag aaccgagagt      6120
     tggtcttcga gacatccgac ggcccagtaa ctcggtccat cacggctggt gttccacagg      6180
     gttcgattct tggccccacc ctgtggaaca ccatgtacga tggagttctg gacgtcgccc      6240
     ttccgcagga ctgcgagatg gtggcgtatg ctgacgactt ggtgctgctg attccgggca      6300
     tcgacgtaaa tgcagtgaag gctgcagccg aggaggcggt cgccagtgtc tctcactgga      6360
     tggctcaaca tcatctccag attgcgccgg aaaagacgga gtgcgtgctt atctccagca      6420
     cgaagaaccc tacgcaggtc accataagag taggggacgt ggaggtgaca tcttcccgca      6480
     cgatgcgtta ccttggggtg acccttcacg atcacctatc gtggctgccc catgtccgag      6540
     aggtaaccac tcgggcaagg aagatagcag atgccgttac ccgcctcttg cgcaaccaca      6600
     gtggaccaaa gaccagcaaa gcgcgactgt tggcctcggt cgcagagtcg gtcatccgat      6660
     atgctgcgcc catctggcat ggcgaggtga cgaagagaga gtgtcgtcga cttttggaga      6720
     gggttcagcg agtctcagca cggagggtgg cacgcacctt ccgtaccgta aggtatgaga      6780
     ccgccaccct cctcgccggg ctgaccccca tctgtctctt gatagaggag gatgcgcgag      6840
     tgttcgagcg tgttaatgat ccgggtcggt cgataacgaa ggcagccatc cggttggagg      6900
     agaggcagcg caccatcacg atgtggcaga gccaatggga cgccgaggcc gacacctcca      6960
     gatacacccg gtggacgcat cggataatcc gcgacatcag cgcttggcaa ggccggagac      7020
     acggggagat gaccttccac ttggcccagg tgctctctgg acatgggttc ttcagagagt      7080
     acctggccat caacggcttt acggaatccc ctgactgtcg cagctgtgcg ggtgttccgg      7140
     aaaatgccca tcacgccatc ttcgaatgcc ccaggtttgc tcgagtgagg atggagtact      7200
     ttggtgaact ggggccgaat ccggtcacgc cggacagtct tcaggacttc cttatgggca      7260
     gccaagacaa ctggagcagc ttctgtgagg cggcacgtcg aataacaaca acgctgcagc      7320
     gtgactggga cacggaacga gaacagcggg ctgcttccaa tcgtgaggaa gctgaaatac      7380
     aacagcagct acagcgagag gaagacgaac gccgcactga agaacggcgg cagctccaca      7440
     atgaggcaaa tcgtgcctac cgccagcgca ataggagaag tcaacctact ccaccagctc      7500
     caccaccaac acccagggag gccgctcgcc tcgaagatgg gcgacggaga gtggcccgct      7560
     ggcgggaaag acaacgaatg attcggaacg gtggaatcca aatgctacga gcgctgttcg      7620
     gccatgatgc ctggtcgagc gaaagtgacg atgaacccga tgacgtcgag cgaggcggac      7680
     ttgatgctgc ccagcaggca gcagcagccg aagccgaaag agcggcacgc taaagctaac      7740
     tttagtaaaa agaacaacga aagtgtaaaa aaaaaaaaga gaaaggtgct tcggtacaga      7800
     tatagggctc cccttaaggg aatgaattca gaggaacagt ttggaaaata gaatttcaac      7860
     ttaaattaaa cggaaaggtg cgaacgcacg gctaaaaagt taggctccct atgagcatca      7920
     cgtccaccct taaatccctt cgcagggcat aaggggcgga ttatgagagg gctgggtttt      7980
     cttttcgatg taacatacga tcaataaaaa tccactcgat ataaaaaaaa aaaaaaa         8037
//
ID   RT2         repbase;    DNA;    INV; 6733 BP.
XX
AC   M93691;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae RT2 retroposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; RT2.
XX
NM   RT2.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6733
RA   Besansky N.J., Paskewitz S.M., Hamm D.M. and Collins F.H.;
RT   "Distinct families of site-specific retrotransposons occupy
RT   identical positions in the rRNA genes of Anopheles gambiae.";
RL   Mol Cell Biol 12(11), 5102-5110 (1992).
XX
RN   [2]
RP   1-6733
RA   Butera S.T., Perez V.L., Besansky N.J., Chan W.C., Wu B.Y.,
RA   Nabel G.J. and Folks T.M.;
RT   "Extrachromosomal human immunodeficiency virus type-1 DNA can
RT   initiate a spreading infection of HL-60 cells.";
RL   J Cell Biochem 45(4), 366-373 (1991).
XX
DR   EMBL/GenBank/DDBJ; M93691; Positions       1    6733.
XX
FH   Key           Location/Qualifiers
FT   CDS           1533..2855
FT                 /product="RT2_1p"
FT                 /translation="MKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQM
FT                 EKLAAAHQRDRDVLNSLLAAKVGGGQPSASPRQPPTPLPRRSSAQPQQQQQ
FT                 QQQRNQHEQEQPRASTSRAVMPPRSEALTAVRGDVVPELTYSEVVRRRYRG
FT                 KATGKPRSQQQPQQQQQQRQLQRQAVGIAQHQQQQQQRQPQRQAVAGSQQQ
FT                 QQERMQQQQQLQRKRKPRPDIIEVSPSEGETWDGIYDKVRKAIRLDAAHSE
FT                 MKGHIKQGRRTHARLLRMELSKTANAPLMLEGVRKIIGDAGVSRLVTEMGE
FT                 LLVVDIDPLATEEDIIAALDAKIGASAGVVSASIWELPDGSKRARIRLPVK
FT                 SARQLEGLKLFLCDCVSKVRAAPPTPPERQRCFRCLEMGHIASNCRSTADR
FT                 QNLCIRCGLTGHKARSCQNEAKCALCGGAHHIGHSECARSAQRCSRP"
FT   CDS           3280..6477
FT                 /product="RT2_2p"
FT                 /translation="MVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASPS
FT                 IARPDTWVVSTSYTASDHRYVLYTVGGTPPSPEQLQNHQQTAQQSSQQQQQ
FT                 QQQQQSLQQQQLSQQQQQQRQRQPSSQQGDSSSQRRVRHAGRRWKASQFSP
FT                 SSFLEALFAADFVQRASTQEGMIAAMLKACDETMQRVTRLHQDPHRNIFWW
FT                 SPLLARLRNNCEVARDRMLQTADLEERSIAAAEHRTARAELSRAIRASKRN
FT                 LFQELIEIAEENAFGAGYRVVMSRLRGSRTPSEADRVVLERIISDLFPEHP
FT                 PCDWSQLSNVGSVEGATTTAGIAPVTDDELLLIASQMANHKAPGLDGIPNA
FT                 AVKTAIMLFPESSGFLYQDCLNRASFPAQWKRQRLVLLPKQGKPPGESSSY
FT                 RPLCMLDALGKVLERLILNRLNEHLEEPSSPRLSDRQFGFRRGRSTVSAIQ
FT                 RVVEAGRTAMSFRRTNGRDNRFLLVVALDVKNAFNTANWQSIASRLQAKGV
FT                 PVGLQRMLRSYFEDRVLYFDTSEGPVVRHVTAGVPQGSILGPTLWNIMYDG
FT                 VLDVPLPPDVEVIGYADDLALLVPATTTDEVRARAEEAVDQVQRWMQQHGL
FT                 ELAPAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQDHLKWRD
FT                 HVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESVLRYAAPVWAE
FT                 ATQVRECRRMLQRVQRKAAIRVARAFRTVRYETATLLAGLVPICHLINEDA
FT                 RVHQQLLAPDRAATREDIRATERQNTIDCWQEEWDADALQQDASRHTRWTH
FT                 RVIPSVGDWQSRKHGDMTFHLAQVLSGHGFFRDYLCHNGFTSSPDCQLCVG
FT                 VPETADDAFFECPRFAAVRQELLGEGGPDPVCPDTLQRHLLRDADSWSRIC
FT                 EGAKRITAQLQRAWDEERAALAVNVIERQDEDAAELEAQRAEVRRARNERR
FT                 NANRRAATARRREERRAGLPPTPPASPRTAQRRAALRERQARFRERRRNRR
FT                 LLGMSGQAINNDDDGRERADLAAGPSGMRNRAIDEENEATDGGLNAAEEAA
FT                 VVEAEVASR"
XX
SQ   Sequence 6733 BP; 1602 A; 1879 C; 2003 G; 1249 T; 0 other;
     gagtgttcat cgagtagccg tcgagtgaag acggatgtaa acacgctccg acagagtttc        60
     ggaaaaaagt gtgtaaaacg gcctcggatc gctcggaaag tgttaaaaac gagtttagag       120
     cacccgtttt acctttagac ggtgttattt acccgaaaat cggtgatttt ttgtaaaagt       180
     gaaaaatcgt gtttttgtgt atacatttgc ccccccccgg tagcaccaaa tttccgggtg       240
     tgggaattaa gtgtaaaaat ctgcgatttt agtgccggaa acacttgtat ttaactaaat       300
     ggacgcttct gaagcgattc caagtgtttt ggaaacgatc cgtgcagcaa aaagtgaaaa       360
     aaacgcgaaa accaaaagtg tcgggggtgc taccgctggg gcatgtgtcc gcggtaaata       420
     acgaaaaaaa cagtaaatcg tgaataactc ggtgagtttt ggtcggattc gagtgcggtt       480
     ttcaccattg tgcgtgtctt tgtgcaaaca ataagaatca aacaaaaaaa cagtgaaaat       540
     cggtgaaaaa atttttgaca tttgtgagtg acagttcagt aatacccacg ggacaaattt       600
     ggccggggcg caattcccaa gggcaaaatt tgaattttcg gcccggtggc ggttggcggc       660
     ggaaccgagg gtgccgaaaa attgtcaaat ttgcaggggt ggtagagcaa gtaacgccga       720
     ctacgggaaa attattttcc cccctccccc ccctcccccc tcccccccag aggtcagaat       780
     agagtagggc gcccgataag agtcggataa ggtcgaggtc gcccgaaaat tctcattttt       840
     ggtagggtgg tagagcgtga ccccagcagt ccgggaaaat tattttcccc gctcccaccc       900
     ccccccccct cccagtgaaa aattttataa gtgtcaaaaa gtcggaaaag tggtccaaaa       960
     agggtggaat tccgggtcga gccgtttgga cgagtgaacg tgccgcgaaa atttgggagt      1020
     ggtgcggaat aattccccac gtgtgtgacg caccctcctg aattttttcc ccaccccctt      1080
     cccccctccc ccccgcccac cagggggcac aaattggacc tttttcgccc tgaacaccgg      1140
     agttgaagcg gaaaccgaca tcatcgtgca gcagatcacc agctaggcgg cgcagaatcc      1200
     agggtcattc cgaccccctg ggtcattcga cccccgggtc attcgacccc cagggttatt      1260
     ttaccccacc catcgcgaac gtcggttatc gcgatggaag cacccgggag atcgacccgc      1320
     tcggtgctag ggcgacgtcg gtggactgcc gcaccagctt ggctccttgc tccaagctct      1380
     ttgcggccga gccacgtgtt gcgcttccta agctaagcgc cacaggcgct agtaagccca      1440
     ttgccgagcc aaaagctgca tcagcgacac cggctccgga gctcgagttg ctcagagcta      1500
     caatacaacg gctcgaggag cagaactgtg cgatgaagga gcaaaacgca aaactcctgg      1560
     agcagataac cggcatgtgc caactgctgc aggaggaaaa ggaggaggca aagcgccgtg      1620
     aggagaagct cgaggcgcag atggagaagt tagccgccgc acatcaacgc gatcgagatg      1680
     tgctcaactc tctgctggcg gcaaaggttg gcggtggaca accgtcagct agtccacgtc      1740
     aacctccaac tccgttgccg cgccgatcct ctgcgcagcc gcagcagcag caacagcagc      1800
     agcagcggaa ccagcacgag caggagcagc cccgcgcgtc gacgtcgcgc gctgtcatgc      1860
     cgccgcgtag cgaggcattg acagccgtcc gcggagacgt cgtgccggag ttgacctaca      1920
     gcgaggtcgt gcggcgtaga tatcgcggca aagctacggg taagccacgc tcccagcagc      1980
     agccgcaaca gcagcagcag cagcgtcagc tacagcgaca ggcagtcggt atcgcgcagc      2040
     atcaacagca gcagcagcaa cgtcagccac agcgacaggc ggtcgctggc tcgcagcagc      2100
     aacagcagga gcgtatgcag cagcagcagc agctacagcg taagcgaaag ccgaggcctg      2160
     acatcatcga ggtgtctccc agcgaaggcg aaacctggga tggcatttac gacaaggtgc      2220
     gcaaagccat tcgtctggac gcggctcaca gcgaaatgaa agggcatatt aagcagggcc      2280
     gccgaactca tgctaggctg ctacgtatgg agctgagcaa gacagcaaac gctccgctta      2340
     tgctggaagg cgtccgcaaa atcatcggcg acgcaggcgt cagtcggctt gtcacagaaa      2400
     tgggtgagct gctggtagtc gatattgatc cccttgctac ggaggaagat atcattgctg      2460
     ccctcgatgc taagattggc gcaagtgctg gagttgtttc tgccagcatt tgggaactac      2520
     cggatggttc gaagcgagca cgcatccggc tacctgtgaa gtcggctcgg cagttggaag      2580
     gacttaaact gttcctgtgc gactgtgtga gcaaggttcg agcagcccca ccaacgcctc      2640
     cagagcgaca gcgctgtttt cgctgtctgg agatgggcca catcgcctcg aactgccgtt      2700
     ccaccgcaga tcggcagaat ctgtgcatcc gctgtgggct taccggacac aaagcacgat      2760
     cctgccagaa tgaggcaaag tgcgcactgt gcggtggcgc tcaccacata ggccacagcg      2820
     aatgtgctcg ttcggcccaa cgatgttccc ggccctgaaa gttctgcagg cgaacctggc      2880
     catggccgtg atgcccagaa cctggtgctg caagctgcca gagaggagaa agcagacgtg      2940
     ctcattctct ctgatgttct gcgcccacct gaaaacaacg gccggtgggc attcagcagc      3000
     tgcaaggcgg tagcggtggt agctgtcggt gagctaccaa tacagcgggt gtggtgcagt      3060
     gaagctcagg ggttggttgc agcgcagatc ggcggagtgg ttttcatcag ctgctatgct      3120
     ccaccaagcc ttaacctcgc agagttcgag cgcttcttgg aagcaataga actcgaaggc      3180
     ttctcccacc ctcaagtcgt cgtcgccggc gattttaacg ccagacatga ggagtggggc      3240
     agcccgagga cttgcgaccg cggggaagag ctgcacggaa tggtggagca gcttggccta      3300
     atcgtgatta atcaaggtcg ggaatacacg tttgttggca acggggtggc tctcccgagt      3360
     atagtggatg tggcattcgc gagcccgtcg atcgctcgcc ctgacacctg ggttgttagc      3420
     acaagctaca ccgcgtcaga ccaccgctat gttctctaca ccgtgggagg aacaccacca      3480
     tcccccgaac aactgcagaa ccatcagcag acagcgcagc agtcgtctca gcagcaacag      3540
     cagcagcagc aacagcagtc cttacaacag cagcagttat cacaacagca gcagcagcaa      3600
     cgacagcggc aaccatcgtc gcagcagggt gattcctcaa gccagaggcg tgtgcgtcac      3660
     gctggccgcc gatggaaagc ctcgcagttt tctccttcct cattcctcga ggcgctgttc      3720
     gctgcggact ttgtccaacg cgcatcgacc caggagggta tgatcgcagc catgctgaag      3780
     gcctgcgacg agacgatgca acgggttacc cgactgcacc aagacccgca tcggaacatc      3840
     ttttggtggt ctcccctcct ggctcgcctg aggaacaact gcgaggttgc ccgtgaccgg      3900
     atgctgcaga cggctgactt ggaggagcgc agcatagcag cagctgagca caggacagca      3960
     agggcggagc tcagccgagc aattcgagct agcaagcgga acttgttcca ggagctgatc      4020
     gaaattgcag aagagaatgc gttcggggca ggataccgtg tcgtcatgtc ccggctccgg      4080
     ggcagtcgga cgccttcaga agcggaccgg gtcgtcctcg aacgcattat atccgacctc      4140
     ttccctgagc atccgccctg cgactggtcg cagctgagca acgttggaag cgtcgaggga      4200
     gcaacaacaa cggcgggaat tgcaccggta acggacgacg agctgctgct catcgcgagc      4260
     cagatggcaa atcacaaagc accagggctc gatggcatcc cgaatgcggc agtgaagacg      4320
     gccatcatgt tgttcccgga gtcttccggg ttcctgtacc aggattgcct caaccgcgct      4380
     tcgtttccgg cgcagtggaa gaggcaacga ctggtgttgc tgccgaagca ggggaagcct      4440
     ccgggagaga gcagctcgta ccgacccctc tgcatgctcg acgcactggg gaaggtactt      4500
     gagcgcctca tcctgaatcg cctcaatgaa catctcgagg agccgtcttc accccgactg      4560
     tcggaccggc agttcggatt tcgtcgaggg cggtcgacag tgagcgccat ccagcgggtt      4620
     gttgaggccg gccgtaccgc catgtcgttc cggcgaacga acggccggga taaccgtttc      4680
     ttgcttgtgg tggcgttgga cgtgaagaac gccttcaaca cggccaactg gcaatccatt      4740
     gccagccgcc ttcaggcaaa aggtgttccc gtcggcctcc aacggatgct tcgaagctac      4800
     ttcgaggatc gtgtgctgta ctttgacacg agcgaaggcc ccgtcgtacg gcatgtaacc      4860
     gccggtgttc cacaggggtc catcctgggc ccaactctgt ggaacatcat gtatgacggg      4920
     gtgctggatg tgccgctacc tcccgacgtc gaagtcatcg gatacgcgga cgatctggcg      4980
     ctgttggtac ctgctaccac cacggacgag gttcgcgcga gagcagagga ggccgttgac      5040
     caggtccaac gttggatgca acagcacggt ctggagctgg ccccagccaa gactgaagcc      5100
     gtcctgatct caagcaagaa gactccgccg caggtgacat ttcgcgtcgg tgacgtggaa      5160
     gtccagtctt ctaggagcat caggtacttg ggcgtgcagc tccaagatca cctgaaatgg      5220
     cgagatcacg tcacgaaagt ctccgaaaag gcgtcgcgcg tggtggcagc tgtaacgcgc      5280
     ctcatgcaaa accacagcgg ccccaggacg gccaagtcaa ggctgctggc gtatgtggca      5340
     gaatcggtgt tgcggtatgc tgctcccgtc tgggctgagg caactcaggt gcgagagtgc      5400
     cgacggatgc tgcaacgagt tcagcgaaaa gcagccatca gggtggcacg ggcattccgt      5460
     accgtcaggt atgagacggc caccctactc gctggactcg taccgatatg ccacctcatc      5520
     aacgaggatg ctcgggttca ccaacaactc cttgctccag accgtgctgc aacgagggag      5580
     gacatccggg cgacggagcg gcagaacacc atcgactgct ggcaggagga atgggatgcc      5640
     gacgcactgc aacaggatgc tagccggcac acgcggtgga cgcaccgtgt aattccatcg      5700
     gtcggcgact ggcagtctag gaaacatgga gatatgactt tccatctggc acaggttttg      5760
     tccggacacg gatttttccg tgactacttg tgccacaatg gattcacgtc gtccccagac      5820
     tgccagttgt gcgtcggcgt cccagagacg gcggacgacg ccttcttcga gtgcccacgc      5880
     tttgcggcag ttcgacagga gctactcggc gagggaggtc cggaccctgt ctgtccggac      5940
     accctccagc ggcacttgtt gcgcgacgcc gatagctgga gtcgtatttg cgaaggcgcg      6000
     aagcgaataa cggcccaact gcagcgagcg tgggacgagg agcgggcagc attggctgtt      6060
     aacgtcatcg agcgtcagga cgaagacgca gcagagctgg aggcccaacg cgcggaagtg      6120
     cggcgggccc gtaacgagcg acgcaacgcc aaccggcgag cagcaacagc acgccggcgg      6180
     gaagaacgtc gagctggact tcccccaacc ccaccagctt caccacggac cgctcagcga      6240
     cgtgcagcgc ttcgtgagcg tcaagcgcgg ttcagggaga ggagacgaaa ccgtcgtctt      6300
     ctcgggatgt ccggccaggc gataaacaat gacgatgacg gccgagaacg cgcggattta      6360
     gcagccggac catctggtat gcgcaaccgc gcaatcgacg aggaaaacga ggccacggac      6420
     ggtggcctga acgccgcgga agaagccgcc gtggtcgagg cagaagttgc ctcccgctag      6480
     gcgtggtatg cacgtaaaaa cagcgacgca tcgagcgtga aaaagcgccc tatttagggg      6540
     aatgagtgaa tttttcggtt gaatttagaa atagaaataa aacatggaag gtgcttttcg      6600
     cacggacaaa aggttggcca ttaagccatg aaaccccctg cagggtaagc cctcgcgggt      6660
     aaaatgtagg ggagcgggag ggtttaattt tgaaacaaaa taaaaaaccc gtttataaaa      6720
     aaaaaaaaaa aaa                                                         6733
//
ID   RTAg3       repbase;    DNA;    INV; 6448 BP.
XX
AC   AB090812;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon RTAg3 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; RTAg3.
XX
NM   RTAg3.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-6448
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
DR   EMBL/GenBank/DDBJ; AB090812; Positions       1    6448.
XX
FH   Key           Location/Qualifiers
FT   CDS           1206..2738
FT                 /product="RTAg3_1p"
FT                 /translation="MMASSGMSTRASARSASVDCRSSLASGSKLFAPEPRV
FT                 ALPRVSVTGINKPTVATKAASTTPELELLKATIQQLEEQNLEMKEQNFRLA
FT                 EQITRMCQLLQEEKEEAKRREEKLKAQMEKLAAAHQRDRNLLNSLLAAKVA
FT                 GGQPSASSRQPPTPLPRRSSAQPQQQQQQQQRNQQEQEQPRASTSHAVMLP
FT                 RSEASTAVRGDVVPELTFSEVVRRRYRGKATGKPRSQQQPQQQQQPQQKQQ
FT                 QLQRRQQQQQQHQGQRYVPPQLRQQAHQQQQRQQQKVRPRPDKIEVVPSAG
FT                 HSWYTLYKTVRDAVKQDPHKGLADHLKMGKRSHAANFRMELSNSANASLVR
FT                 AEGQEIVGDAGLARVITDMADVLITNIDPLATEEDIKKAIEREHQEPIEIV
FT                 RVSVWELQDGTQRARVHLPAKAAAAFEGSKLRLCGCISKIRGVEKAAPERQ
FT                 RCYRCLERGHLAHACRSSTDRQQLCIRCGSEGHKARDCSSYVKCAACGGPH
FT                 RIGHMSCEHPASRST"
FT   CDS           2669..6187
FT                 /product="RTAg3_2p"
FT                 /translation="MCGLRWTSSHRAHELRTSGFAFNLKVMQINVDHCQAG
FT                 QDLALQAAREHRADVLLLSDIYRPPANNGRWAYDAAKSVAVVATSSYPIQR
FT                 VLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVV
FT                 IDGDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAAT
FT                 SSVIDVCFATPSIARPETWEVHEFARSDHQLITYSVGEAEQQSRGLSTGGP
FT                 SAGRQRVICAGRRWITTQFHVDSFRSALEDVNFAEQATTHAGLVDAMVDAC
FT                 DIVMQRAPNVLQHQHRDVYWWAPVIEELRNECIAARERMRLTTDLQERSLA
FT                 AAEHRTAKTRLEKAIKVGKRAEFAKLIDIAEENELGVGYQVVLSHLRGSRV
FT                 PPETDPVELGRIVTDLFPTHPPVYWPETDDVDSGASDFDRVTPEELQEIAA
FT                 HMAIRKAPGLDGIPNAAVKVAIEKYPGVFCRVYQDCLNTGTFPQQWKRQRL
FT                 VLLPKPGKAPGESSSYRPLCMLDALGKVLERLILNRHLEDPDSPQLSDAQY
FT                 GFRRGRSTISAIQSLVDAGKASRSFGQTNNRDKRCLMVVALDVRNAFNTAS
FT                 WQSIANALREKGVPSGLLRILQSYFTDRELIFNTSEGPVVRCVSAGVPQGS
FT                 ILGPTLWNVMYDGVLRIPLPDEAKVIGYADDLVVLAPGRTPEESAAVAEAA
FT                 VSAVDQWMQQHHLELAPAKTEMTIISSLKHPPSHISIDVRGTAVPYSRSIK
FT                 HLGVLVHDHLSWIPHVTAVTQRAVQIAQAVGRLMPNHRGPKMSKSRLLAAV
FT                 ADSVMRYAAPVWHEALNTRECRRLLERVQRKSAIAVARTFRTVRYETAVLL
FT                 AGLLPICRAICEDTRVHSRRGTAAGAQLRKEERETTIAEWQATWDSDAAGH
FT                 QASGYVRWAHRLIPDIGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFT
FT                 SSPDCPNCPGVRESAEHAMFACLRFAEVRERLMDGVNPDTLLTHMLQSQQN
FT                 WSNVCEAAKQITTILQREWDDFRTSLFEQGVLADNAQLRNADVLRQERLRR
FT                 YNETRNAARRAATQQRQAERLPPPPPSPRTERRREVNRLAVARLRERQRAA
FT                 RAEMHGAYQPAPSNDSDDDDDDVENRQATNAASTSEAARTAAEESRVGLTE
FT                 AEAAAAVEAELSSR"
XX
SQ   Sequence 6448 BP; 1605 A; 1761 C; 1882 G; 1200 T; 0 other;
     gtgtacgccc cccccccacc tccggttgcg ctagaattcc gggtgtggaa atttggggaa        60
     aaatttgtgt tttcggcccc ggaaacactc aattttagtg aaattggtgg tgctgaatcg       120
     ttttatcgtg tttttgagac gatctgagca gtgcaaagtg tcaaaaagtg tttgtgtttt       180
     tttccccata cattttgtat gggaaacttt gtatacacat atttcagtga aaactgcacg       240
     gattttgtcc ggatgtgtct tgatagttgc gcgtagtgac gttccaagtg ttgtgcgaga       300
     aaacggacgc gaaatcggcg gaaaaacgca aaaataaaaa agtgtcgggg gtgctaccgc       360
     cggagcacgt gttttcgtaa aaacggaata aatagttaat cgtgaataac tccgtgagtt       420
     ttggtccgaa tcgagtacgg ttttcaccgt tgtgctagtt ttaacgcgta caaaaagatc       480
     caatcaaaaa actagtgaaa atcattaaaa aaaatttgac atttctgggt gacagttcag       540
     cgatacccgt aaagcaaatt tggtttggga agcagttccc gaacagcaaa atttgaattt       600
     accgttagtg ctcgaaaact gctcaaatcc tggaaagtgt gcgtgaaatt cagtgaagtg       660
     gtgtagcgtc agcgggagct cgaatctgct cgattcgagg cactcaaaaa ctgctcgaat       720
     ttttcgaatc tgctcgaaaa attcggaaaa ttcggagaag ctgtagggtg gtagagggcg       780
     acataacaaa cacgggaaaa ctattttcca ccctttcccc ctccctccct cccggtgaaa       840
     agtccctaaa gcaaaaaact aggtccaaaa aagggtcgaa aaagcgggca gcgcagtttg       900
     gacgtaaaaa cgtgccggga aatttcggga ttggtgcgga tccattcctt acgtaagcga       960
     cgcaccctct cgtaattttc tccacccggc acccctcccc cccagcccac caggggggtt      1020
     gcaagtcgga ccgtagtgga aaaaccggcg tggaagaagg attctacagc agcgagtgag      1080
     cggcagaaca tcagctagac ggcgctgcat acctggggtc atcccgaccc cccggggtca      1140
     accgaccccc ggggtcacat cgacccccag ggttatctaa cccaccaact tgtacgtcgg      1200
     caaagatgat ggcatcatcc gggatgtcaa cccgcgcgag tgcgaggtcg gcctctgtgg      1260
     attgccgtag cagcttggca tccggttcga agctgtttgc gcccgagcct cgagtggcac      1320
     tgccaagggt tagcgtcaca ggcatcaaca agcccaccgt agcaaccaag gccgcctcga      1380
     ccacaccgga gctcgagttg cttaaggcaa caattcagca actggaggag cagaacttgg      1440
     aaatgaagga gcaaaatttt cgcctcgcgg agcagataac tcgcatgtgc caactgctgc      1500
     aagaggagaa ggaggaggca aaacgtcgag aggagaagtt gaaggcacag atggagaagc      1560
     tcgctgccgc acatcagcgc gaccgaaact tgctcaactc gctactggca gcaaaggttg      1620
     ccggcggaca accgtcagct agttcgcgtc aacctccaac tccgttgcca cgccgatcct      1680
     ctgcgcagcc gcagcagcaa caacaacagc agcagcggaa ccagcaagag caggagcagc      1740
     cccgcgcgtc gacgtcgcat gcagtcatgc tgccgcgtag cgaggcatcg acagccgtcc      1800
     gcggagacgt cgtgccggag ctcacattca gtgaggtggt gcgtcgcagg taccgtggca      1860
     aggccactgg caagccacgc tcccagcagc agccacaaca gcagcagcag ccgcaacaga      1920
     agcagcagca gcttcagcgt agacagcagc agcagcagca acatcaggga cagcggtatg      1980
     ttccgccgca actccggcag caagcacatc agcagcagca gcggcagcag caaaaggttc      2040
     ggccaaggcc ggacaagata gaggtggtcc cgagtgccgg acactcctgg tacactttgt      2100
     acaaaacagt tcgggatgcg gttaaacaag acccgcacaa gggccttgca gaccacctta      2160
     aaatgggcaa gcgcagccac gccgcaaatt tccgaatgga gttaagtaat tcggccaacg      2220
     ccagcctggt ccgcgcagaa ggtcaggaga tcgtcggtga cgccggactt gcccgggtga      2280
     tcaccgacat ggccgatgtc ctgataacga acatcgatcc tctggcaaca gaagaggaca      2340
     tcaaaaaggc cattgagaga gaacaccaag agccgatcga aatcgtccga gtgagcgtgt      2400
     gggagcttca agatggcact cagcgagctc gagtccacct gcccgctaag gctgccgctg      2460
     ctttcgaggg gtcgaagctc cgactgtgtg gctgcattag caaaatcaga ggcgttgaaa      2520
     aagcagcacc tgagcgccag cgctgctatc gctgcctgga gcgcggccac cttgcccacg      2580
     catgccgttc ctcgacagac cgtcagcaac tctgcatccg gtgtggcagt gaaggtcaca      2640
     aagcccggga ctgctccagc tacgttaaat gtgcggcctg cggtggacct catcgcatcg      2700
     ggcacatgag ctgcgaacat ccggcttcgc gttcaactta aaagtgatgc aaatcaacgt      2760
     ggatcactgt caagcagggc aggacttggc gctccaagca gcgcgtgaac accgtgctga      2820
     cgtcctgctc ctgtcggaca tctaccgacc accggcgaac aatgggcgtt gggcgtatga      2880
     tgccgccaaa tcggtagcag ttgtggctac aagttcctac ccaatccagc gggtgttgcg      2940
     cagtgctgtg cctggaattg tagccgcaca gattggcggt atcgtcttca taagctgcta      3000
     cgcgcgaccg agacgcccag aggaggacta tgaaggcttt ctggccgcag ttcagctgga      3060
     ggcatcaacc cactcccagg tcgtcatcga cggcgatttt aacgcctggc acacggagtg      3120
     gggtagtgcc aggaacagcc agagaggtga agatctgctg cagcttatcc agagcgttca      3180
     gctacaggta atcaactccg ggaatgaacc cacattcatt ggcagaggag cggccaccag      3240
     cagcgtcatt gacgtctgct tcgccactcc gtccatcgct cggccagaaa cgtgggaggt      3300
     gcacgagttt gcccggtccg atcatcaatt gattacatac agcgttgggg aagcggaaca      3360
     acagtcccgc gggttgtcga ctggtggtcc gtcagccggc cggcagcgcg ttatctgcgc      3420
     tggtaggcga tggattacca cgcagttcca cgtagacagc ttccgttctg ctctcgagga      3480
     cgtgaacttc gcggaacaag cgacgacaca cgctggccta gtcgacgcta tggtcgacgc      3540
     gtgcgacatt gtcatgcagc gggcccccaa cgtgttgcag catcaacatc gcgacgtcta      3600
     ttggtgggca ccggtaattg aagagctgcg gaatgagtgc attgcggcgc gtgagcggat      3660
     gcgcctaacc accgatctgc aagagaggag tctcgccgca gccgagcacc ggactgcgaa      3720
     gactcggcta gaaaaagcca tcaaagtagg caaacgtgca gagttcgcca agcttataga      3780
     catcgccgag gagaacgagc ttggagtggg gtatcaggtt gtcctgtctc atctgcgcgg      3840
     cagtcgtgta ccgcctgaga cagacccggt cgagctggga cggatcgtta ccgatctgtt      3900
     ccccacccac ccaccggtct attggccgga aaccgacgat gtcgattccg gagcgtccga      3960
     ttttgatcgc gtgacccccg aagagctgca ggagatcgcg gctcatatgg ctatcaggaa      4020
     agcgccagga ctggacggga tccccaatgc tgcggtgaag gtcgcgattg agaagtaccc      4080
     gggggttttc tgccgcgtgt accaggactg cctcaacact ggtacgtttc cgcaacagtg      4140
     gaaacggcag cgcttggtac tgctgcccaa gccaggcaaa gcccccggag aaagcagctc      4200
     ctacaggcca ctgtgcatgc tggatgcact aggcaaagtg ttggagcggc ttatcctcaa      4260
     cagacacctc gaggacccgg attcaccgca gctctcggac gcgcagtacg gctttcgtcg      4320
     cggacgatcc accatcagtg ccatccaaag cctggtggac gcaggcaagg cgtcccgatc      4380
     gttcggccag actaataatc gcgacaagcg atgcctgatg gtggttgcgc tggatgtccg      4440
     caacgcattt aatactgcca gctggcagtc gatcgccaat gcgttgcgag aaaagggggt      4500
     cccttcaggg ctgctgcgga tactgcagtc ctacttcacg gatcgggagc tcatctttaa      4560
     caccagcgag ggacccgtcg tacgttgcgt cagcgcggga gttccacaag ggtccatact      4620
     gggcccgaca ttgtggaacg taatgtacga cggggtgctg cggattcccc tacccgacga      4680
     ggccaaggtc attggctacg ccgatgatct tgtcgtcctg gccccgggta ggacaccgga      4740
     ggagtctgca gcagtggcgg aggcagcggt gtcagcagtc gaccagtgga tgcagcagca      4800
     ccacttggag ctggcaccag ctaagacgga gatgacgatt atctcaagtc tgaagcatcc      4860
     tccaagccac atctccatcg acgtgagagg aactgctgtc ccatattcga ggagcatcaa      4920
     gcacttgggt gtactggtac acgaccatct atcgtggata cctcacgtga ctgcagtgac      4980
     gcagcgggcg gtccagattg cgcaggcggt tggtcgactc atgccgaacc accgggggcc      5040
     gaagatgtca aagtcccgac ttttggcagc ggtggctgac tcggtgatgc gttacgccgc      5100
     acctgtatgg cacgaggcgc tgaacactcg cgagtgccgc aggctgctag agcgagtcca      5160
     gcgcaaatca gctatcgccg tggcccggac gttccggacg gttcggtacg agaccgcagt      5220
     gctgctcgcg ggacttctgc cgatctgcag agcaatctgt gaggacacca gggtgcacag      5280
     ccgccgtggg actgcagccg gtgcacaact gaggaaggag gaacgtgaga cgaccatcgc      5340
     cgagtggcaa gcaacatggg acagcgatgc agctggtcat caagccagtg gttacgtccg      5400
     gtgggcgcac cgccttatcc cggacatcgg cgcatggcag tcgcggaagc atggagaggt      5460
     gaactttcat ctgtcgcaga tcatctccgg tcatggattc ttccgtaagt atcttgcgga      5520
     tatgaaattc acctcgtccc cggactgccc aaattgccct ggcgtaagag agagcgccga      5580
     acacgcgatg ttcgcttgtc tgcgcttcgc cgaggttcgc gaaaggctga tggacggcgt      5640
     caaccccgac acgctgctga cccacatgct ccagagccag cagaattgga gcaacgtctg      5700
     cgaggcagcc aagcagataa caaccatcct gcagcgcgaa tgggacgact tccgcacgtc      5760
     gttgtttgag cagggcgtac tagctgacaa cgcccagctc cgcaatgcag atgtccttcg      5820
     tcaggaaagg ctgcggcgtt acaacgaaac ccggaatgca gcgagaagag ccgcaacgca      5880
     gcagcgacag gcagaacgcc tgcccccacc accgccctca ccaagaactg agcggagacg      5940
     ggaggtgaac cgtcttgcgg tggcgagact aagggaacgt cagcgagcag ctcgtgccga      6000
     aatgcacggc gcataccaac cagctccatc taacgatagc gatgacgacg atgacgacgt      6060
     tgaaaaccgt caagcaacca atgcagcttc aacgtcagaa gcagcgcgaa cggcagctga      6120
     agagtcccgc gtagggctga cagaagccga ggccgcagca gcggttgagg ctgagttgtc      6180
     ctcccgctag gatgggtgat agaacaagca ggaagccttg agagggagtc cttataaaac      6240
     aaaatgggaa gaaatagaac gaggaaggga aaaaaataaa taaaaataaa tgagttaggt      6300
     gcgctttgca cggatgtagg ccgctcgaaa gagcagaaaa acccccttta gacccttcgc      6360
     ggggcaaaag tgtggcttag gtgagggttg ggtctagaca gtaaaatgaa atgaactgaa      6420
     taaacaaccc gaatacttaa aaaaaaaa                                         6448
//
ID   RTAg4       repbase;    DNA;    INV; 7072 BP.
XX
AC   AB090813;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon RTAg4 DNA, complete sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; RTAg4.
XX
NM   RTAg4.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-7072
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol Biol Evol 20(3), 351-361 (2003).
XX
DR   EMBL/GenBank/DDBJ; AB090813; Positions       1    7072.
XX
FH   Key           Location/Qualifiers
FT   CDS           1147..3318
FT                 /product="RTAg4_1p"
FT                 /translation="MSDEAQPQQVSAPYQLWPRKGSVVVMQPQPIERPATP
FT                 MMELCYSSDDDELNSTIIAMPEPASECEAAEAAMDLEPPAAAQPTPTASPV
FT                 PGNMVVAGPIDAGSCALLMAQLQNIGAQLTTALEELRLCREENAALRRENE
FT                 LLLTGTRSVLELQTAANATLQQSSGQGGNRETARKRQQRLRRRERERQQQQ
FT                 QQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTTVVRG
FT                 RPSQRHRQPQQQQQQQQQQGERYVPPQLRQQRQQQQRPRQQQQQQQQQQQQ
FT                 QGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQ
FT                 QQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLPHRKQTQLQLS
FT                 PRLQQQQQQQQQSQQQQQQQPQQLLWTTVVRSCPSQRQRQLQQQQQQQQQQ
FT                 QQGERYVPPQLRQQRQQQQPQQQQQQRPQQQRPQQQRPQQQRSQQRKPAKP
FT                 ELIEVSPNEGQDWESLLLLVQTAVRTDERYKPLKDHVVLGRRTSKALLRLT
FT                 LSRKANAQYMLQQVPAIVGSAGVCRHVTEMASLVIHDVDPLAREDDLTSLI
FT                 DSKFESGAGIVSTTMTKMADGTQRAYVRLPAMFVSELDGTKIKLGFCVSKV
FT                 RAAPPTPRERVRCYRCLELGHWAHDCRSPDDRQNMCIRCGVVGHMAKVCTS
FT                 QPKCLKCGGPHTIGHPDCARSALQ"
FT   CDS           3237..6614
FT                 /product="RTAg4_2p"
FT                 /translation="MHFSAKVPQVRWSTHNWTPRLRPVGLAMTPQLRVMQV
FT                 NLGRGERAQDIALQTAQEKRVDVLLLLELYRPPANNGRWAFDCSKKVAIVA
FT                 TGSLPLQRIWCSNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLE
FT                 TLTHSQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVLNQGTTST
FT                 FDGNGAATASIVDVAFATPTIAQPGTWNVCGDYSYSDHRYITYTVGTIVPV
FT                 VNEPSSPRMRHQGRIRHADRRYKATQFSQRAFRARFSERAVSHERMVEIML
FT                 ATCDKTMQRVTTSHSDPHRDLFWWTPLLRLLRENCDRARDRMRQTSDLQER
FT                 SIAAAEHRTARAELGKAIKASKRNSFQELIDIAEENVFGAGYLVVLSHLRG
FT                 GRTPPETERDRLEHIVSDLFPQHPPLVWPEAADIEGEEQPGAVADVSDDEL
FT                 KLIARRMANKKAPGLDGIPNAAVKAAILEHTGVFTALYQDCLVNGTFPAAW
FT                 KRQRLVLIPKPGKPSGVSCSYRPLCMLDALGKVLERLILNRLHEFLEDPES
FT                 PRLSDRQYGFRRGCSTIGLIQRVVEAGQRAMSFGRANRRDKRFLLVAALDV
FT                 RNAFNTASWQAIATALRTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSV
FT                 TAGVPQGSILGPTLWNTMYDGVLDIALPPDAEILGYADDLVLLVPGTTPDN
FT                 VKAAAEEAIISVMEWMARHHLELAPAKTEMVVISSTKAPTRITVRVGDVDV
FT                 TSSRSIRYLGVTLQDKLSWLPHVKEVTERAGKIADATSRLLRNHSEPRASK
FT                 AKLLASVSESVMRYAAPVWSKELQKREPGRLLERVQRKMALRVARAFRTVR
FT                 YETATLLAGLTPICLLLDEDARVYQRLSAVNRTDTRANIRKQERQATIEQW
FT                 QQQWDAEADTSRHTRWAHRVLPNIGSWQSRKHGDVSFHLCQVLSGHGFFRD
FT                 YLCRNGFTSSPDCQRCSGVPETAEHAMFECPRFAEVRQQLLGEGITDPVRP
FT                 ENLQQHLLRDAESWSRICEAAKRITASLQQAWDDERAALAAHGNEQHFEEV
FT                 ADLEARRAEIRRARNDRRNASRRAARARQRELQRAGRPPSPPPSPRTAARR
FT                 ADLRLRQARFRARRRQAI"
XX
SQ   Sequence 7072 BP; 1751 A; 2015 C; 2113 G; 1193 T; 0 other;
     aatagtgtta ttcaatcgaa attcggtgaa tttttgcgaa attgaaaaat cgtgttttgt        60
     gtatacattt gcccccccgg tagcaccaaa tttctgggtg ttaaaaaagt gcgcaaaaat       120
     ttgtgtttca ggcgccggaa acacttgatt ttggataatg cttctaaagc gattaaaagt       180
     gttttcgaga cgttttgtga agttttaagt gcataaaagt gggtgtttat atccccatac       240
     aatttgtatg ggggactttg aacgtttata tcggagtgaa aaacgcacgg atctgtgccg       300
     gatgtgtctt ggaaggtgcg cgcaatgacg cttaaggtta agtgacaaaa atcagaaccg       360
     aaatcggtga agaaaccagt gaaaaaagtg aatttaaagt gtggaacaag ccgggtgaca       420
     ggttacattt gctacccaag ggacaaaccc gcggtgacag ccgttaccca aggagcaatt       480
     tttaaatttt cggccgagtg acggttggcc gaaaaactgt tagcggcgga aaattatgaa       540
     attcttaagg gtggtagagg acgtgtccct gatcacggga aaaattattt cccccccctc       600
     tccccctccc accgctcccc cctggggcta gaatagagta gggcgcccga taagcgtcag       660
     ataaggtcga gatcgcccga aaattctggc tttcggcagg gcggtaaagt tggacccccg       720
     cagtccggga aaattatttt ccccactccc accctccccc ctcccggtga aaaatttttg       780
     aagtggcaag tcaaaaagag gtccaaaaag gttggaattc ggggttcgag ctgtttggac       840
     gtataaacgc accggggaaa ttcgggactg gatcggaata attccccacg cgtgagacgc       900
     accatcccga attttacccc accccctccc aggggggctt aaattggacc ttcttcacat       960
     taacggcaga gttgaagcgg aaatcgacag aaacgggtag cagaacacca gctaggcggc      1020
     gaagcatccc aggggtcatc ccgacaccct ggatcattcg agccccgggg tcatttcgac      1080
     ccccagggtt atttcgaccc ccaatgcaac ttgccaaagc aggtgtgagc aataacaagg      1140
     caggggatga gtgacgaggc ccaaccccag caagtgagtg cgccgtacca gctgtggccc      1200
     aggaaagggt cagtggttgt gatgcagcca caacccatcg agcgcccggc cacaccgatg      1260
     atggagctgt gctactcaag cgacgacgat gagctgaaca gcaccatcat cgcgatgcca      1320
     gaacccgcgt cggagtgtga ggcagcggag gcggccatgg acttggagcc accagcagca      1380
     gcacagccaa caccaacggc atcccctgtc ccgggcaaca tggtagttgc tgggcccata      1440
     gacgcgggaa gttgcgccct gctgatggca cagcttcaaa acatcggcgc ccagctaacg      1500
     acggcgctgg aggagctgcg actttgccgc gaggaaaacg cggcacttcg tcgcgagaat      1560
     gagttgctgc tcacgggcac tcgttcggtg ctcgagctgc agactgcagc gaacgcaacc      1620
     ctgcagcagt cgtcgggaca aggtggaaac cgggagacgg cccggaagcg ccagcaacgg      1680
     ctgaggcggc gagagcggga acggcagcag caacagcagc agcagcagca gcagcagcag      1740
     cagcagcagc agcagcagca gcagcaacgc cagcagcagc agcagtgtca gcagcagcgt      1800
     cagcagcagc cgcagcaaca acagctgcag cagccgcagc agcagctttg gacaacggtg      1860
     gtaagaggcc gcccgtccca gcggcatcgt caaccgcagc agcagcagca gcagcaacag      1920
     cagcaaggtg aacgctatgt tccaccacag ctccggcagc agcgacagca gcagcagcgc      1980
     ccgaggcagc agcagcagca gcagcaacag cagcagcagc agcaaggtga gcgctatgtc      2040
     ccaccacagc tccggcagca acgacagcag cagcagcatc agcagcagca gcagcagcag      2100
     cagcagcagc gtcagcagca gcagcgtcag cagcagcgtc agcagcagca gcgtcagcag      2160
     cagcagcagc agcagcagca gcagcgtcag cagcagcagc gtcagcagca gcagcagcag      2220
     cagcagcagc accaacagca gcagcagcaa tggcagcagc agcagcagca acagcagcag      2280
     ccgcggcaaa gtttgcctca tcgcaaacag acgcagctgc agctttctcc acgactgcag      2340
     cagcaacagc agcaacagca gcagtcgcag caacaacagc agcagcagcc gcagcagctg      2400
     ctctggacaa cggtggtaag aagctgcccg tcccagcggc aacgccaact gcagcagcaa      2460
     cagcagcaac agcagcagca gcagcaaggt gagcgctatg tcccaccaca gctccggcag      2520
     caacgacagc agcagcagcc gcagcagcag cagcaacagc gtccgcagca acagcgaccg      2580
     cagcaacagc gacctcagca gcagcgatca cagcagcgaa agccggccaa gcccgagctt      2640
     atcgaggtat cacccaatga aggtcaggat tgggagagcc ttctgctgct tgtgcaaacg      2700
     gcagttagga ctgacgagcg ttacaagccg cttaaggacc acgtcgtcct gggccgccgc      2760
     accagtaagg cgttgctgcg actcacgctc agccgcaagg cgaatgcgca gtatatgctg      2820
     cagcaggtcc ctgccatcgt gggcagtgct ggagtgtgtc ggcacgtcac ggaaatggcg      2880
     tcactggtca ttcatgacgt cgacccgcta gcccgagagg acgatctcac ttcgctgatt      2940
     gacagcaagt tcgagtcggg agcgggaatt gtgtcgacca caatgacaaa gatggccgat      3000
     ggtacacagc gtgcgtacgt gcgattgcct gcaatgtttg tgagtgaact cgacggcacc      3060
     aagataaagt tgggattttg cgtcagtaaa gtcagagccg cgccaccgac ccctcgagag      3120
     cgtgtgcgct gctatcgctg tctcgagctg ggtcattggg cccatgactg ccgttcaccc      3180
     gacgaccggc agaacatgtg catacgctgc ggcgttgtgg ggcacatggc aaaggtatgc      3240
     acttctcagc caaagtgcct caagtgcggt ggtccacaca caattggaca ccccgactgc      3300
     gcccggtcgg ccttgcaatg accccacaac tgcgagtaat gcaggtgaac ttgggcagag      3360
     gagagagggc ccaggacatc gccctccaaa ctgcccaaga gaagagagtg gacgtgctgc      3420
     tgctgttgga gctgtatcga ccgcctgcca acaacggtag atgggccttc gactgttcga      3480
     agaaggttgc catcgtcgca actgggtctc ttcctctcca gaggatttgg tgcagcaaca      3540
     caccgggact cgtcgctgcc gagataggcg gcaccacttt cctcagctgt tacgctccac      3600
     ctcgtcagcc caccgacgag ttcgagcgct tcattgaagc agtacagctc gagacgctta      3660
     cccattcaca agtcgtcatt gccggcgact tcaacgcctg gcatgtggaa tggggaagcg      3720
     agcgtaacag cgagaaggga gaagagctgc tcagtgccat ccagcagcta gacctggttg      3780
     tgctaaatca gggcacgacg agcaccttcg acggcaacgg agcggcaaca gcgagtatcg      3840
     ttgacgtggc gtttgcgaca ccaaccatcg cgcagccggg aacgtggaac gtgtgcggtg      3900
     attactcgta ctccgaccac cggtacatca cgtacactgt tggcaccata gttcccgtcg      3960
     taaacgagcc ctcatcacca cggatgagac atcaggggcg cattcgacac gcggatcggc      4020
     ggtataaggc gacgcagttc tcgcagcgag ccttccgagc gcggttctca gaacgggcgg      4080
     tcagtcacga acgcatggtt gagatcatgc tcgccacgtg tgacaaaacg atgcagcggg      4140
     ttacaacgtc gcatagtgac ccccatcgtg acctgttctg gtggacgccg ctgctcaggc      4200
     tgctgcgaga gaactgcgat cgcgcccgcg atcggatgcg gcagaccagc gatcttcaag      4260
     agcggagcat tgccgcagcg gaacatcgca cagcgagggc ggagctgggg aaggcgataa      4320
     aggccagcaa gaggaactcg ttccaggagc tgatcgatat cgccgaagaa aatgtgtttg      4380
     gagccggata tctcgtcgtt ctgtcccacc tccgtggtgg acggacgcca cccgagacgg      4440
     agcgggacag gctcgaacac atcgtgtccg atctcttccc ccagcacccg cccctcgtct      4500
     ggccagaagc ggcagacatc gagggagagg agcagccagg agcagtagca gatgtttcgg      4560
     acgatgagct caaactcatc gcacgtcgca tggccaataa aaaggccccg ggactcgatg      4620
     gtatcccgaa tgcggcggtg aaagcagcca tcctcgagca cacgggggtt ttcacagcgt      4680
     tgtaccagga ctgcctcgtt aacggcacgt ttcctgcagc gtggaagagg cagcgccttg      4740
     tactcatccc gaagccagga aaaccctccg gagtgagctg ctcgtaccgg cccctgtgta      4800
     tgttagatgc actgggcaag gtgcttgaac gcttgatcct gaacaggctg cacgagttcc      4860
     tagaagatcc ggaatcaccg cgactgtcgg accggcagta tggtttccgc agagggtgct      4920
     cgaccatcgg tctcattcag agggttgttg aggccggcca gcgtgcgatg tcgttcggtc      4980
     gagcgaaccg acgcgacaaa cggttccttc tagttgctgc gctagatgtg aggaacgcgt      5040
     ttaacacggc cagctggcag gccatcgcca ctgcgctgcg gacgaaacgt gttcccgccg      5100
     gcctccaacg tatcatacac agctatttcc aggaccggga gctggtgtat gaaacctccg      5160
     aaggcccggt agtgcggtcc gtcacggcag gggttccaca ggggtctatc ttgggcccca      5220
     ccctgtggaa cacgatgtac gacggtgtgt tggacatcgc cctgccaccc gatgcggaga      5280
     tcctggggta tgccgacgac ctggtgctgc tggtcccagg cacaacccca gacaacgtga      5340
     aagctgctgc ggaagaggcg ataatatcag tgatggagtg gatggctcga caccacctcg      5400
     agctggcgcc ggcgaaaacg gagatggtcg tgatctccag caccaaagcc ccaacgcgga      5460
     tcaccgtccg agtaggtgac gtggacgtca cctcgtcccg ctcgatccgc tatctcggtg      5520
     tgaccctcca ggacaagttg tcatggctgc cgcacgtcaa ggaggtcacc gagagggctg      5580
     ggaagatcgc cgacgccaca tccagactgc tgcgaaacca tagcgaacca agggcatcga      5640
     aagcgaagct gctagcttcg gtgtccgagt ccgttatgcg ttatgcagca ccggtatgga      5700
     gcaaggagct gcaaaaacgt gagcctggtc gcctgctgga gcgtgttcag cgaaagatgg      5760
     cactgagggt ggcacgagca ttccgtaccg tgaggtatga gactgccacc ctcctagctg      5820
     gtctgacccc catctgcctg ctgttggatg aggacgcccg ggtctatcag cgactaagtg      5880
     ccgtcaaccg caccgacacg agggcgaaca tccggaagca ggagcgacag gccacgatcg      5940
     aacaatggca gcaacagtgg gacgcggaag ccgacaccag ccggcacacg cgttgggcgc      6000
     accgtgtgct acccaacatc ggcagctggc agtcaaggaa acacggagat gtgtcgttcc      6060
     atctgtgcca ggtactctcg ggacatggct tcttccggga ctacctgtgt cgcaatggct      6120
     tcacatcgtc ccctgactgt cagcggtgca gcggcgtccc tgagaccgcg gagcacgcga      6180
     tgttcgagtg cccgaggttt gctgaagttc gtcagcagct actcggcgag ggaattacgg      6240
     acccggtccg tccggaaaac ctccagcagc acctgttgcg cgatgccgaa agctggagcc      6300
     gtatctgtga agctgctaag cggataacgg cttcacttca gcaagcctgg gacgacgaga      6360
     gagcagccct agcagcccat ggcaacgagc agcacttcga agaagttgcc gatctggagg      6420
     cacggcgagc agaaatccgt cgagcacgga acgaccggcg aaatgcgagc cgccgagcag      6480
     ccagggcacg gcaacgagag ttgcagcgag caggacgtcc cccatctcca ccaccatcgc      6540
     ccagaactgc ggcacgtcgt gcagatcttc ggctgcggca agcgcggttt agagcgagaa      6600
     ggcgtcaagc gatataggac gcgagacgcc tgtatgggga gcacagtcct gcatcaacat      6660
     cgtcatcaag cagcagcgac gacgattcag acggccgagg aagcgcggat atcgcagccg      6720
     gaccgtctgg aatgcgcaac cgcgcacatg aacgcgaaaa cgaagccacg gacggtggcc      6780
     tgagtgctgc agaagaagcc gcagcggtcg aggcggaagt tgcctcccgc tagacgttct      6840
     gccttcttta gaaaagaagc gtctactagc aagaacgagt gctctactaa gggagaatag      6900
     aagttgaact gaattgaaca ataaaaaaaa cggaaggtgc atcttgcacg gaataggttg      6960
     aggcaattaa gtctagcatc cccctgcagg gtacgccctc gcgggtaata atgtaggggt      7020
     gagggagggt ctgaattcca ctgaataaag aaacccgctt tgaaaaaaaa aa              7072
//
ID   RTE-10_Hmel repbase;    DNA;    INV; 1652 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-10_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1652
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           137..1636
FT                 /product="RTE-10_Hmel_1p"
FT                 /translation="PEIDINEIRIALGHLKSNKAPGEDGITAELLKAGGQP
FT                 VLISLASLFNSVLYNGITPEAWSRGMVKLFFKXGDKALLKNYRPISLLSHV
FT                 YKLFSRVITNRLTHKFDDFQPVEQAGFRKGFXTVDHIHTLRQIIQKTEXYN
FT                 QPLCLAXVDYEKAFDTIETWAVLEXMQRCLIDCRYVNVIKCLYKAATMTVQ
FT                 VQNXSTRPIRLHRGVRQGDIISPKLFTAALEDVFKTLDWNGRGINVNGQYL
FT                 SHLRFADDIVIMAESLHDLEEMLNDLGDSSRRVGLGMNLDKTKVMFNSHVP
FT                 PRPVVVNGATLEVVQDYIYLGQTIQLGRHNFKKEVTRRIRLGWAAFGKLRH
FT                 IFESSVPQCLKTKVFNQCVLPVMTYGAETWTLTVGLVHQFKVAQRAMERAM
FT                 LRVSLADRIRNEAIRQRTKVTDIARRISTLKWNWAGHVSRRTDGRWSRYVL
FT                 EWRPRLGKRSVGRPAARWTDDLKKVAGTGWMREAQDRDGWRLMREAYVQQW
FT                 TAIG"
XX
SQ   Sequence 1652 BP; 474 A; 366 C; 424 G; 375 T; 13 other;
     ctaacagacg agyttcctga gatcgacata aatgagatta ggatagccct cggtcatctt        60
     aaaagcaaca aagctcctgg agaagacgga ataactrcag agcttctcaa agcaggaggc       120
     cagcctkttt tgataacctg agatcgacat aaatgagatt aggatagccc tcggtcatct       180
     taaaagcaac aaagctcctg gagaagacgg aataactgca gagcttctca aagcaggagg       240
     ccagcctgtt ttgataagct tagccagtct tttcaattcc gtcctttata atggcattac       300
     accggaggca tggagcaggg gtatggtaaa attatttttc aaaaasggcg ataaagcctt       360
     gttaaagaat taccgaccra tatcactctt gagccatgta tataagttat tttctagggt       420
     tatcacgaat cgtctcactc ataaattcga tgacttccaa ccagttgagc aggccgggtt       480
     tcggaaaggc tttrgtaccg tagatcacat acacactctt aggcaaatta ttcaaaagac       540
     cgagsaatat aatcagcctc tatgcctagc ctwtgtggac tacgagaagg ctttcgatac       600
     aatcgagacc tgggctgttc tggaawyyat gcagagatgc cttattgact gtcggtacgt       660
     taatgtgata aagtgtctgt acaaagccgc gaccatgacc gtccaagtac aaaaccrcag       720
     cacaagacca atccgattac atcgcggggt aagacaggga gatatcattt ctccgaaact       780
     gtttacagct gccttggagg acgtcttcaa gacgctagat tggaacgggc ggggcataaa       840
     tgtaaatggc cagtacttat cgcatttgcg atttgctgac gacatagtca tcatggcgga       900
     aagtctgcat gatttggagg agatgctcaa cgacctgggc gattcttcta gacgggtggg       960
     tctcgggatg aatcttgaca aaacgaaagt tatgtttaat agtcatgtgc ccccgagacc      1020
     cgtggtcgta aatggcgcta cacttgaggt tgtgcaagat tatatatacc ttggccaaac      1080
     catccaactt ggccggcaca acttcaagaa ggaagtgaca agaagaatac gccttggctg      1140
     ggcggctttt gggaagctcc gccacatttt tgaatcgtct gtcccacagt gcctaaagac      1200
     aaaagtcttc aatcagtgcg tcctacctgt catgacctac ggagctgaaa cgtggacact      1260
     caccgtaggg ctggtacacc agttcaaggt cgctcagcgt gcgatggaac gcgcaatgct      1320
     cagagtttct ctggcagata gaatccgcaa tgaagcgatt cgccagagaa ccaaagtcac      1380
     tgacattgca cgaagaatca gcacgctgaa gtggaactgg gccggccatg tctccagacg      1440
     taccgacggt cgatggagcc gatacgtgyt agagtggaga ccgcgcttag gcaagcgtag      1500
     tgtaggacgc cctgcagcac gatggacgga cgatttaaag aaggtggctg gcaccggatg      1560
     gatgcgagaa gcccaagacc gggatggttg gcgcttgatg agggaggcct acgttcagca      1620
     gtggacggcg ataggctgat gaaaaaaaaa aa                                    1652
//
ID   RTE-10_LMi  repbase;    DNA;    INV; 3111 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3111
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3471-3471 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(589..891,807..2801,2794..3084)
FT                 /product="RTE-10_LMi_1p"
FT                 /translation="MLGDFNAKVGKEEIYKPTIGNFSLHEESSDNGVRLIN
FT                 FAMTNDLTISSTKFQHKRIHLGTWISPDGKVVNQIDHVAIQKRSKTVLKMS
FT                 EPLGVQIVTQTICPCSYTKKIQNSIKDVRTFRGADCDTDHMLVISKMKMKL
FT                 KRKVNRNREEITRYNITNLEEVNIKENFTKEIENNLTKTRMANRETQDVES
FT                 RWKHLKDSVQEAASKTTGKRKRANKIWFNTKCQEKVLERRNARNAWIKERN
FT                 NMALKERYYNLRQETQRILRQEKREYYNSMIREAEDDFQHHRTRQMYQNIK
FT                 RSFGKFTKREQFIKDQNGKILTNNNDIQKRWKTYFSQLLNCSDPQSYFTFE
FT                 EPATVEVEVTTPSINEIQQAIKKLKNNKACGEDHIYAELLKNGGPQLEEEI
FT                 QSLIETIWKTETIPADWKTAIVCPIFKKNDPLVCDNYRGIALLDVTYKILS
FT                 ICLLNRLIPVTEELIGDYQCGFRRNRSTLDHLFSLRQVTEKAWEFNVDVHI
FT                 LFVDFKKAYDSIHRQTLLNIMKEFEMPSKLIRLVKMCIDETVCRIKTPVGE
FT                 TENFKVYTGLRQGDAISPILFNLVLEKIDREFTKTNPQGIQLQDSNITRLA
FT                 YADDVALISSSKTELIRMMQNYYKIAEKTGLHVNEEKTEYLVISKKRRKEA
FT                 PLTVDGFTFKTVERFKYLGSLFSKNNRTDIEIDARLATANKTLFSFHKILR
FT                 KRSLSSNFKIRLYQSTIIPVTLYACETLTFRKKDEEKLLTFERKVLRKIFG
FT                 PVYDENNMEWRIRKKEKNEELRQLYKHRNIVEVLKKRRLNWAGHIARMTED
FT                 RLPRMAFSRTIAGSRGRGRPRSRWRDNIREDTARINSDINWTHSALDRKLW
FT                 KRLVEQAYGR"
XX
SQ   Sequence 3111 BP; 1242 A; 548 C; 643 G; 677 T; 1 other;
     ggtgaacgca atctcctggg ggcagagcac cccaaataaa actctgtccc aggttggggg        60
     ttgtgcagag ggctaccaac ccactcatgt aaaatgtaga ccggtcagga cactcaacgc       120
     aagcctcgga aacaggacag aatttactgg aacaaaaact ggcaaagcaa caaggttttc       180
     tcttttggtt catggaatat tacaagcctg caccgccctg gaagtgccca aacactagtg       240
     aacgaattaa gaaaatacag agtgcaactg gtggctcttc aagaagtaag atggcaagga       300
     acgggktcac tgaaaacagg agacgggaca attttgtatg gagattgcgg tcagcgccat       360
     gaatttggaa ccggattcta cattcataaa tcaataagtg actcagtaaa ggaattcaaa       420
     catgttaata atcgtatatc atacgtcaca attcagacac aatggttaga cattacattt       480
     ctaaatgcac acgcacccac agaagataaa gatgatgaag tgaaggaaga attctacggt       540
     caactggaac acgcatacaa ctcaataagt aggcataacg taaaaataat gttaggagat       600
     tttaatgcca aagtaggaaa ggaagaaatc tacaaaccaa ccattggcaa ttttagctta       660
     cacgaggaaa gttcagataa tggggtacga cttataaact ttgcaatgac aaatgacctc       720
     acgataagca gcacaaaatt tcaacacaaa cgcattcatt tagggacgtg gatatcacca       780
     gacggaaaag tagtgaatca gattgaccat gtagctatac aaaaaagatc caaaacagta       840
     ttaaagatgt cagaaccttt aggggtgcag attgtgacac agaccatatg ttagtcatat       900
     caaaaatgaa aatgaaactc aaaaggaagg taaacagaaa tagggaggaa atcactaggt       960
     ataacataac aaacctggaa gaagtaaata taaaagaaaa ctttacaaaa gaaattgaga      1020
     acaatctaac aaaaacgaga atggccaata gggaaacaca agatgtcgaa agtagatgga      1080
     aacacctgaa ggactctgtt caagaagcag cttccaaaac tacaggtaaa agaaaacgag      1140
     ctaacaaaat ttggtttaac acaaagtgcc aagaaaaagt gctggaaaga agaaatgcga      1200
     gaaacgcatg gattaaagaa aggaacaata tggcattgaa ggaaagatac tataacctcc      1260
     gccaagaaac acaaagaatc ctaagacaag agaaaaggga atactataac agtatgataa      1320
     gagaggcaga ggatgatttc caacatcaca ggacaaggca gatgtatcaa aatataaaaa      1380
     gatcttttgg taaattcact aaaagggaac agtttataaa ggatcagaat ggtaaaatat      1440
     tgaccaacaa taatgacata caaaaaagat ggaagacata cttttcacaa cttctcaact      1500
     gcagtgatcc acaatcttac tttacatttg aagaacctgc cacagttgag gtagaagtca      1560
     ccaccccatc aataaatgaa atacagcaag caataaagaa attaaagaat aacaaggctt      1620
     gtggcgaaga ccatatatac gctgagttat taaagaatgg aggaccacaa ctggaagaag      1680
     aaatacagtc tttaatagaa acaatttgga agacagaaac cattcctgca gactggaaaa      1740
     ccgcaattgt atgccctata tttaagaaga atgatcccct cgtgtgtgac aactacagag      1800
     gaattgcttt attggatgtc acctacaaaa tcctatccat ctgtctatta aacaggctga      1860
     ttccagtaac agaagaatta attggagact atcaatgcgg tttccgcaga aacagatcca      1920
     cattagatca cttattctct ttaagacaag taactgagaa ggcatgggag ttcaatgtag      1980
     atgtccacat attattcgta gattttaaaa aggcctatga tagcatacac agacagacac      2040
     tcctaaatat aatgaaggaa tttgaaatgc cctcaaaatt aatccgttta gtcaaaatgt      2100
     gtatagacga aactgtatgt cgcataaaga caccggtagg agaaactgaa aattttaagg      2160
     tgtacactgg actgagacaa ggggatgcca tttcacctat tttatttaac cttgtcctag      2220
     agaagatcga tagagaattt accaaaacta atccacaagg gatccaacta caggacagta      2280
     acattactag acttgcctat gcagatgatg tagcattaat aagcagttcc aaaacagaat      2340
     taatcagaat gatgcaaaat tattacaaaa ttgccgagaa aacaggatta catgttaatg      2400
     aagaaaagac agaatacctg gtcataagta agaaaaggag aaaagaggca cctttgactg      2460
     tagatggatt cacttttaag actgttgagc gcttcaagta cttagggagt cttttcagta      2520
     aaaacaatag aacagatatt gaaatagatg cccgtttagc aacagcgaac aagacgcttt      2580
     ttagtttcca caaaattcta aggaaaagat cacttagcag caacttcaaa atccgcttat      2640
     atcaatcaac cattataccg gtgacgctat atgcatgtga aacattaaca tttagaaaga      2700
     aagatgaaga aaaactgtta acattcgaaa gaaaagtact aaggaaaatt tttggacctg      2760
     tatatgatga aaataacatg gagtggagaa taagaaaaaa atgaagaact aagacagctg      2820
     tacaaacacc gtaacatcgt cgaagtgctc aagaagagaa ggctgaactg ggcaggccat      2880
     atagccagaa tgacagaaga tagattaccg agaatggcat tcagcagaac aatagctgga      2940
     tcgagaggaa gaggcagacc cagaagcagg tggcgagata acattcgaga agacacagcc      3000
     aggataaaca gcgacatcaa ctggacacac agcgcactcg acagaaagtt gtggaagagg      3060
     ctcgtagagc aggcgtatgg tcgataaggc ccttgccaca tataaagtaa g               3111
//
ID   RTE-10_PPo  repbase;    DNA;    INV; 1118 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-10_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1118
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3161-3161 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           94..1089
FT                 /product="RTE-10_PPo_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="HLDDRDIRIIQNLYWNQRANVRVENDVTDDVEIKRGV
FT                 RQGCVLSPMLFNLYSEAIMSEALHDLDCGVKINGRNINNLRYADDTVLIAS
FT                 SLQDLQKIVDRVNLCSIKAGLKMNVAKTKLMVISRKELNDDCIIVNGQKLE
FT                 RVRKYKYLGTWLSEDWESDQEIKTRIEVARNAFEKMRKIFCCRNIKIPLRV
FT                 RLLKCYIWPILLYGSEAWTIKEDLRKRIEAFEMWAYRRMLAISWTQRVTNE
FT                 EVLRRVHQKRELLQTIKMRKVSYLGHVLRHDRYDLLQLILMGKVAGKRSVG
FT                 RRKKSWLRNIREWTGIASAAQLFRLARDKVKFGELTANLR"
XX
SQ   Sequence 1118 BP; 370 A; 214 C; 264 G; 270 T; 0 other;
     cacttcgttt ttgttaacgt ttgtaaaact tttaatagca aaagacaaaa ttcttatgta        60
     caattggcta ccaaggcctt tgccattggg taacatttag atgacaggga tatccgaata       120
     atacagaacc tgtattggaa ccaacgagct aatgttcgag tggaaaatga cgttacagat       180
     gatgtcgaga ttaaaagagg agtgcgtcag ggttgtgtct tgtcaccaat gctgtttaat       240
     ttatactcgg aagctataat gtcagaagca ttacatgacc tagactgcgg agttaaaata       300
     aatggacgta atataaacaa ccttcgttat gctgatgaca cagtgctgat agcgtcctca       360
     ttacaagatc tccaaaagat tgtcgatcga gtaaatctat gtagcataaa agcgggtcta       420
     aaaatgaatg ttgccaagac aaagcttatg gttatatctc gaaaagaact taacgatgac       480
     tgcataatag tgaatggtca aaagttggag agggtgcgca aatataaata cttgggtacg       540
     tggctaagtg aagactggga aagcgaccaa gaaatcaaaa cacgtatcga agtagcacgc       600
     aatgcatttg aaaaaatgcg caaaatcttt tgctgccgca acataaaaat acctttgcgc       660
     gtccgcctac taaagtgcta tatctggccc atccttctat acggatccga agcctggaca       720
     ataaaagaag accttagaaa acgtatagaa gcgttcgaga tgtgggccta taggcgcatg       780
     ttggccataa gctggactca gagagtgaca aacgaggagg ttctgcgacg agtccaccaa       840
     aaaagggaac ttttgcagac catcaagatg agaaaagtat cgtatctcgg ccacgtgctc       900
     aggcatgaca gatatgatct cctccaactc atcttgatgg gaaaagttgc cggcaaaagg       960
     agtgttggtc gtcgtaagaa atcgtggtta cgcaacatcc gagagtggac aggaattgcg      1020
     agtgccgccc aactgtttcg cctcgcaaga gacaaggtca aatttggaga actgaccgcc      1080
     aaccttcgct agtcggagag gcactttaag aagaagaa                              1118
//
ID   RTE-10_PXu  repbase;    DNA;    INV; 329 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-10_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-329
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3090-3090 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..247
FT                 /product="RTE-10_PXu_1p"
FT                 /translation="FALKQKWKWAGHVARLEDXRWTVRTTLWKGPQGRRGI
FT                 GRPITRWEDEIKKVAGTTWAHVAQDRENWASLEEAFTRTGVPTDS"
XX
SQ   Sequence 329 BP; 118 A; 46 C; 83 G; 81 T; 1 other;
     tttcgcacta aagcaaaagt ggaaatgggc gggccatgtt gcaagactag aagatmagag        60
     atggactgtt agaacaactt tatggaaggg accacaagga agaagaggaa taggaagacc       120
     gattacacga tgggaagatg aaataaagaa agtagccggc actacctggg cacacgtggc       180
     tcaagataga gaaaattggg catctttgga ggaggccttt acccgaacag gggttcctac       240
     agatagttaa aaaaaaaagt agttacattg tacattttat tgtatgtatt tatctgtacg       300
     gaaataaatg gctttattat tattattat                                         329
//
ID   RTE-11_Hmel repbase;    DNA;    INV; 1624 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-11_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1624
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-1624
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1409
FT                 /product="RTE-11_Hmel_1p"
FT                 /translation="ITNEVIKIAQEQLALPLTHLFNLILETTETPIQWSES
FT                 NVILIYKKGDPHDITNYRPISLLPSIYKIFSSLINTRLSHTLNAQQPIEXA
FT                 GFRKGFSTIDHIHTLEXILRTTKTLYIAYIDYKKAFDTVSHSSIWKALEEQ
FT                 GVENQYIQIIKNIYNXNXGRVKLXTTGPSFPIKRGVRQGDPLSPTIFIAVL
FT                 ESIMRKLNWETKGLNINGNYLSHLRFADDLVLLSESGTQLRQMILLLNTAS
FT                 KEVGLEINLSKTMLMTNSTEVTIYVDNEELQYTDKYIYLGKQIGFDRRNKE
FT                 WEIERRTQSTWNKYWSMKEIFKSKLPVMIKTKTMSSSLLPCLTYACQTWKY
FT                 TNKIKNKIITCQRGLERSMLNIRRRQKVRHTKIKNILKSTDALVHARTLKW
FT                 RWAGHVARVQDDRWTKRITTWRGPRGKRRIGRPHAKWQDDNSWLKLDSSCS
FT                 GQTVMVSFGGGLHPKRGSCRLIVS"
XX
SQ   Sequence 1624 BP; 627 A; 303 C; 284 G; 402 T; 8 other;
     atataaccaa cgaggttata aaaatagctc aggagcagct agcactgccc ctgactcatt        60
     tgtttaacct tattttggaa accaccgaaa caccgataca atggtcggaa tcaaacgtaa       120
     tacttatata taaaaaaggt gatccacacg atataacgaa ctacaggcca attagcctat       180
     tacctagtat atacaaaata ttctcttctt tgattaacac cagactaagc cacacactaa       240
     atgcccaaca acctatagaa cmagcaggat ttagaaaagg tttctcgacs atagaccaca       300
     ttcatacatt agaaakaata ttacgaacga caaagactct ttacattgct tacatagatt       360
     acaagaaagc attcgacacc gtttcacatt caagcatatg gaaagcacta gaagaacaag       420
     gagtagaaaa tcaatacatt caaataatca aaaatatata caacaycaat asaggcagag       480
     tgaaactagr aacaactgga ccatctttcc ctataaaaag aggcgtcaga cagggagacc       540
     ctctatcacc gacaatattt attgctgttt tggagtcaat aatgagaaaa ttaaattggg       600
     aaacaaaagg actaaacatt aacggtaatt acttaagcca tcttcgtttt gcagatgatt       660
     tggtactcct gtcggaatcg ggcacacaac tacgccaaat gatactatta ttaaacacag       720
     caagtaaaga agttggactg gaaattaact tatccaaaac aatgctcatg accaatagta       780
     cagaggtaac catatatgtg gacaacgagg aactccaata cacagataag tacatttatc       840
     taggcaaaca aattggtttt gacagaagga acaaggagtg ggaaatagaa agacgcacac       900
     aaagcacctg gaacaaatac tggagtatga aagaaatttt taaaagcaag ctgccagtta       960
     tgataaaaac gaaaacdatg tcttctagtc ttctaccgtg ccttacatac gcatgtcaga      1020
     cttggaagta taccaataaa atcaaaaaca aaatcattac ctgccagcgc ggtcttgagc      1080
     gcagtatgtt aaatatccgc agacgtcaaa aagttcggca cacaaaaatm aaaaacatcc      1140
     taaagtccac agatgcacta gtccacgcac gaacactaaa gtggaggtgg gcggggcatg      1200
     tagcacgagt acaagacgat agatggacta aaagaataac cacatggaga ggtccaagag      1260
     gtaaaagacg gatagggaga cctcacgcga aatggcagga cgataatagc tggctcaaac      1320
     tggattcaag ttgctcagga cagacagtca tggtctcttt tggaggaggc cttcacccaa      1380
     agaggggttc ttgcagatta atagtatctt aatttacaaa taaacacata tatgcgtgta      1440
     gatatttatc tcatattaat taatattaaa tgtaacacta gaaccattaa cactatgtca      1500
     taagaattaa aaataaatat taaatatcat agaatagaaa tataacacct gcacattagt      1560
     gtacttatta tgtatgcaag aaacaataaa ggctttttta tttttatttt ttttttattt      1620
     tttt                                                                   1624
//
ID   RTE-11_HMM  repbase;    DNA;    INV; 3225 BP.
XX
AC   .
XX
DT   21-FEB-2013 (Rel. 19.10, Created)
DT   21-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-11_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3225
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2818-2818 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(242..1846,1719..3209)
FT                 /product="RTE-11_HMM_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="MSAHRKKRPSVPGGPAIPDHRGDGRGHGGAEGAKNLR
FT                 VGSGHHTYHQLHLATYNVRSLKEDVYLAELESELGHINWHILGLSEVRRQG
FT                 EDTITLKSGHLLYHREGDKTSLGGVGILVNKVLSGNVMEVSSVSTRVAYLI
FT                 LKLTRRYSLKVIQVYAPTSTHSDDEVEAVYDDITRALHDTTKTHFTVVMGD
FT                 FNAKVGAQERGESVIGSHGIGSRNRRGQMLVNFLESQRLSLMNSFFQKKPQ
FT                 RKWTWRSPDNVTKNEIDFIMTNRRYIFKDVSVINRFNTGSDHRLVRGTLNI
FT                 DFRLERNRLIKSTLRPSQRHIVAKSDEFQLELQNRFQLLETTEDVDQCANQ
FT                 FAXVIREVGEAFCQQSQRSKSSKFSAETVDLMRQRRETSTDSPNFRLLNKR
FT                 VKNQIRFDLRQSNLRAIEDAIERNRGSKVFAKQLGRSHLAKLTTSDGRVIT
FT                 SKPDLLLEAETFYGGLYSSHAPKPTIENANDKRAKLTRHFTDELPDIEIAE
FT                 IGMALEQLKNNKAHWGGRYYHGTLKSWWAYCLGGAPKDIRLPKLGWLLSSS
FT                 KTTRHTGEDGITTELLRAGGRIVLEELRKIFNTVLNKGTTPEAWSRSVVIL
FT                 FFKKGDKTRLKNYRPIALLSHVYKLFSRVISNRLARRFDDFQPPEQAGFRK
FT                 GYSTVDHIHTLRQVIQKTEEYNRPLCLAFVDYEKAFDSIETWAVLDSLQRC
FT                 QVDWRYIEVLKCIYTSASMTVQIQDVQTRPIPLKRGVRQGDVISPKLFTNA
FT                 LEDVFKTLDWSGQGININGEYISHLRFADDIVVMAESLHELTEMLQSLSVS
FT                 SRRVGLGMNLDKTKVMFNSFADPRPVIVDNVSIEVVQEYIYLGQTIQLGRN
FT                 NFDKEADRRIRLGWAAYGKLRQIFDSPLPQCLKSRAFDQCILPVMTYGAET
FT                 WTLTKGLVHKFQVAQRAMERAMLGVSLKDRIRNEEIRRRTRVTDIAQRIGK
FT                 LKWQWAGHICRRADGRWGRRVVEWRPRTKRPVGRPPARWADDMKRLAGSGW
FT                 VRKAEDRVWWRELGKAYVQQWTKDGC"
XX
SQ   Sequence 3225 BP; 928 A; 756 C; 833 G; 707 T; 1 other;
     gggatgcaag ggggccataa tacctaagtg ccctcaaaca gtcaacctca cctgcccgtg        60
     gtgcatcctg ctgatctacg aacgaggctc tgacgaccga acgatggcgg tataaccatc       120
     caatcagcca ggcttcaaat taggctggtg acgggcagca gcgtcaccag tgcaaggggg       180
     cccggccctg cgctcgccaa cacgcccttg cctagcgtgg cgagtatggg caacacttcc       240
     catgtcagca caccgaaaga aacggccctc agttcccggt ggccctgcta ttcccgacca       300
     tcgtggtgac ggtcgtggtc acggcggggc agagggtgcg aagaatctcc gggtaggatc       360
     cggtcaccac acataccacc aactacattt ggctacatat aatgttcgtt cgttgaagga       420
     agatgtctat ctagctgagc tcgagtcgga gttaggacac ataaactggc acattctagg       480
     gctgtcagaa gtccgaagac agggagagga cacgataacc ctgaaatcgg gccacctact       540
     ctaccatcga gagggcgata agacgtcact aggcggagtt ggcatattgg ttaacaaagt       600
     tctctctggc aatgtgatgg aagtcagcag tgtgtccact cgggtagcat acctcatact       660
     caaactaact aggaggtatt ctctgaaagt gattcaggtt tatgctccca cgtcgacaca       720
     ctctgacgac gaggtcgagg ccgtctatga cgacataaca agggccttac acgacaccac       780
     caagacccac ttcactgttg ttatggggga cttcaatgcc aaagtaggag cacaagaacg       840
     cggtgaatcg gttattggat cgcacggtat tggtagcaga aaccgtaggg gccaaatgct       900
     agttaacttt ctcgaatccc agaggctctc tctgatgaat tcttttttcc agaaaaagcc       960
     tcagaggaag tggacatggc gaagcccaga taatgtgact aaaaatgaga tcgactttat      1020
     catgacgaat aggaggtata tattcaaaga cgtctcagtg atcaacaggt ttaataccgg      1080
     aagtgatcac cgacttgtac gagggacttt gaatatagac ttccgactcg aaagaaatcg      1140
     tctgataaag tctacgctcc gaccgtcaca acgccatatc gttgctaaat ccgatgagtt      1200
     ccagctggaa ctccaaaacc gattccaatt gctggaaact acggaggatg ttgaccaatg      1260
     tgccaatcag tttgcgamgg tcatccgaga agtgggagag gctttttgcc aacaaagtca      1320
     gaggagtaaa tcatccaagt tctcggccga aacagtggat ctgatgagac agagacggga      1380
     gacgtctacg gattcgccaa atttccgcct tctcaataag cgtgtaaaaa atcaaatacg      1440
     attcgacctc cgccaaagca atctaagagc aatcgaagat gctatagaac gaaatagagg      1500
     ctcgaaagta ttcgctaaac aattgggaag gagtcatttg gcgaagctga cgacatctga      1560
     tggtcgagtc attacatcga aaccagatct actcctagaa gccgaaacat tttatggagg      1620
     actgtactcc tctcatgcac ctaaacccac cattgaaaac gcgaatgaca aacgtgccaa      1680
     gctgacccgt cacttcacgg acgagctacc ggacatagag attgccgaaa ttgggatggc      1740
     tcttgagcag ctcaaaaaca acaaggcaca ctggggagga cggtattacc acggaactct      1800
     taagagctgg tgggcgtatt gtcttggagg agctccgaaa gatatttaat accgtcttaa      1860
     acaagggcac aacgccggaa gcatggtcta gaagtgtggt catattgttc ttcaaaaaag      1920
     gagataaaac gcgcctcaag aactacagac cgatagcact tctaagccat gtctataagc      1980
     ttttctcaag agtcatatca aaccggcttg cccgaagatt tgacgatttc caacctcctg      2040
     aacaggccgg gtttcgaaaa ggctacagta ccgtagacca catccacaca ctacgacagg      2100
     ttatacaaaa gaccgaggaa tataatcgcc ctctgtgtct cgcatttgtg gactacgaaa      2160
     aagccttcga ctccatcgaa acctgggctg ttctcgattc tctgcagcga tgtcaagtcg      2220
     attggcggta tatcgaggtg ttgaaatgta tatatacatc cgcttcgatg actgtccaaa      2280
     ttcaggatgt ccagacaaga ccaatccctc tgaagcgcgg agtaagacag ggagatgtaa      2340
     tatctccgaa actgtttact aacgctttag aggatgtctt caaaacactg gactggagtg      2400
     ggcagggtat taatatcaac ggagaataca tttcacacct tcgatttgct gacgacatag      2460
     ttgtaatggc cgaatcgctg catgagttaa cggagatgct gcaaagcctg agtgtttctt      2520
     ccagacgggt gggtctggga atgaacttgg ataagactaa ggtcatgttc aattcatttg      2580
     cagatccaag gccagttatc gtcgataatg ttagcatcga agttgtccag gaatacatct      2640
     acctaggcca aactatacaa cttggtagga acaacttcga caaagaggct gacagaagaa      2700
     tacgtttggg ctgggcagcg tacggaaaac ttcgtcaaat cttcgactcg ccactacctc      2760
     aatgcctgaa atctcgggca ttcgaccagt gcattcttcc ggtcatgacg tacggggcgg      2820
     agacatggac tctaacgaaa ggcctcgtcc acaaatttca agtcgctcag cgcgccatgg      2880
     agcgggctat gctcggtgta tctcttaagg atagaatccg aaacgaggaa atccggagga      2940
     gaaccagggt taccgacata gcccaaagaa ttggtaagct gaagtggcaa tgggcggggc      3000
     atatctgtcg tagagccgac ggccgctggg gcagacgtgt cgtagagtgg agaccccgta      3060
     caaaacgacc ggtgggacga ccccctgcca gatgggctga cgatatgaag agattggcgg      3120
     gaagcggatg ggtccgaaaa gctgaagatc gagtgtggtg gcgagaattg gggaaggcct      3180
     atgtccaaca gtggacaaaa gatggctgtt gatgatgatg atgat                      3225
//
ID   RTE-11_LMi  repbase;    DNA;    INV; 3199 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3199
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3472-3472 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(808..996,1000..1155,1064..1645,1611..1757,
FT                 1761..3173)
FT                 /product="RTE-11_LMi_1p"
FT                 /translation="MVIGSTLFPHKEIHKGTWTSPDGNTVNQIDHVLIDTR
FT                 HKSDLLDVRSLRGPNKIQIIFWYGHGGRGYLMQRKESDPGHRNITTLESVE
FT                 VRGGGGAAAAGTVSGKDNSDSGKRWRINQWKLEGGGGPRPREQYQEKITRI
FT                 LENVGEYNNIEDQWEAIKKTVETSAREILGIGTRQVRPSWFDTECQIATEE
FT                 KNEAYRRTLRSHCTRRIVEEYKEKRKTEKRIHQRKXREWMKASVKEMELMR
FT                 SRNKIRKFYGEVNAXRKPFSSKASLXKGETGNIINEEKGICERWRRYFDSL
FT                 LNLSITIRESNRNKWGRQSENPIETNGEDDPDDNIAQPNIEEVKTVMKKLK
FT                 NNKAAGTDGDFSRTVARRQRAGRSLLKMVTRIWEEEKMPQQWKEAIICPIY
FT                 KKGDQMECGNYSGIALLNLGYKIFSNILFDRILPIIQRETGPYQCGFLPGK
FT                 STIDQIFTLRQILEKTNEYGVGTHHLFIDFKAAYDSINRNQLYQALGELGI
FT                 PRKLVRLVRMTMNETQGSIRIGGMMSNTLSIKNGVRQGDALACLLFNAALE
FT                 RVMRNANLLNRGTIFYKSVQILAYADDIDIVARTQKAMEETFTALEQASRN
FT                 MGLIINEQKTKYMAAGKAHRENMPNAITMGNYTFERVEHFKYLGSTVTHLN
FT                 DTSYEIKQRLILANRAYFALTRLLSSRLLTRTTKLTIYKSLIRPVLTWTLT
FT                 TKDSEILDAFERKVLRRIIGPICERGRWRRRYNHELYTIYKDQPIRRIVKS
FT                 SRLRWAGHVARMNDTEVPKRVLQGKPGGQRGRGRPRARWEDGVIEDLRKMG
FT                 YRNWRVLAKDREKWKEIVEEAKAHHEL"
XX
SQ   Sequence 3199 BP; 1207 A; 542 C; 805 G; 640 T; 5 other;
     ccgtgtggag ttgctagtct cccatcgggc acctccccag tggcgggggg aacgttcacc        60
     gatatggtgc acgggggaaa taaaatacct ggggtggacc aaaactagca aaagaacaac       120
     tgctgccggt tggattgggc ccccggcgct gaaaacttct acaaagtaaa gtcggacgga       180
     tgaaaggagg aggacctggc atggatgagg acaatgagat ggaataaagt aaacgaggga       240
     aataaggaag aagagaaatt aagagtagat cgtctatata ttggtacttg gaatgtgaga       300
     tcctatatcg cccaggagca ctgaagtaat gctggatcaa ataatgaatc tgaagcaaag       360
     tataatagca ctacaagaaa tcagatggac agggagtgga gttttagaaa agaaagaagc       420
     aaatatattc tatagctgca taaagaaatc gtgagctggg caggattgtt gtacatcatc       480
     aattaaacat ttggtaatag ggtttacacc cattagtcaa gattatcaac atcaggataa       540
     agggcaaatt ctttaactat tccataatta atgccatgca ccaacagaag aagccgaaga       600
     agaagagaaa gaagtattct atgaatcact ggaaagagca tatgatgagt cccgccgccc       660
     agggcatgat attaaaataa tagccggaga cctaaacgct caggtgggga aagaacagat       720
     ttatagaccg ataattggcc cacacagcaa acatgctaca agtaatgaga acggaacaag       780
     gcttatactt tcgcagcatc tagaaatatg gtaataggat caacactgtt cccacataaa       840
     gaaatacata agggaacatg gacctcacca gatggaaaca cagtaaatca gatcgaccat       900
     gtgttgatag atacgagaca caaatcggac ctattggacg tgaggagtct tagaggccca       960
     aacaagatac agatcatttt ctggtatggg cacgggtgag ggcgaggata tctaatgcag      1020
     cgaaaggagt ctgacccagg gcacagaaat ataacaactt tagaatcagt ggaagttaga      1080
     gggggggggg gggccgcggc cgcgggaaca gtatcaggaa aagataactc ggattctgga      1140
     aaacgttgga gaatataaca acatcgaaga tcagtgggaa gcgataaaaa agacggtgga      1200
     gacatcggca agagagatac tgggaattgg aacaagacaa gtaagaccat catggtttga      1260
     cactgaatgc caaatagcaa ctgaagaaaa gaatgaagca tatagaagga cactgcgttc      1320
     acactgtacg aggaggatag ttgaagaata taaagaaaaa cggaagactg aaaagaggat      1380
     tcaccaaaga aaaawgagag aatggatgaa agcaagtgts aaagaaatgg agctcatgmg      1440
     aagcagaaat aaaataagaa aattctatgg agaagtgaat gcakcacgga agcctttcag      1500
     tagtaaagct agcttawtaa aaggtgagac agggaacata ataaatgaag agaagggaat      1560
     atgcgaaaga tggcgcaggt attttgatag tctcctcaac cttagtataa caatcagaga      1620
     atccaataga aacaaatggg gaagatgacc cagacgacaa cattgcccag ccaaatatag      1680
     aagaagtgaa aactgtcatg aagaaattga aaaacaacaa ggcagcaggg acagatggtg      1740
     atttcagcag aactgtttaa gcaaggaggc agagagctgg acgaagcctc ctgaaaatgg      1800
     tcaccagaat atgggaagag gagaaaatgc cccaacaatg gaaagaggct ataatatgtc      1860
     ccatatataa gaaaggagat cagatggaat gtggtaacta cagtgggatc gcactactta      1920
     atctgggata taaaatattc tctaatatac tattcgacag aatcctccca atcatacaga      1980
     gggagacggg gccgtaccaa tgcggatttc tccccgggaa gtcaactata gatcaaatat      2040
     tcaccttaag acaaatcctg gaaaaaacaa acgaatatgg ggttggcacg catcacctct      2100
     ttatagattt caaagcagct tatgatagca taaatagaaa tcagttatat caagctctag      2160
     gcgaactggg aatcccgaga aagttggtaa ggctggtgag aatgacaatg aacgaaacac      2220
     aaggtagtat aagaatagga ggaatgatgt ccaacacatt gagtattaaa aacggagtgc      2280
     gacaagggga tgcattggca tgtcttctct ttaatgccgc cctggagagg gtgatgagaa      2340
     atgcaaacct tctgaatagg ggaacgatct tctataaatc agtgcagata ctggcctatg      2400
     cggatgacat agatatagta gcaagaaccc aaaaagcaat ggaagagaca tttacggctc      2460
     tcgaacaggc tagtaggaac atggggttaa ttattaatga acagaaaaca aaatatatgg      2520
     cagctggaaa agcacataga gaaaatatgc caaatgcaat aacaatgggc aattatacat      2580
     ttgagagagt tgaacatttc aagtacctgg gctcgacagt tacccatcta aatgatacct      2640
     cctatgaaat taagcagaga ttaatactag ccaacagagc ctattttgcc ctaacaagac      2700
     ttctatcctc aaggctcctg actcgtacca ctaaattaac tatctataaa tcacttatac      2760
     gaccagtgct tacgtggaca ttaacaacta aagatagtga aatactggac gcatttgaaa      2820
     gaaaggtact cagacgaatt atcggcccaa tctgtgaaag aggaagatgg aggaggagat      2880
     acaaccatga gttgtatacc atatacaaag accaacccat cagaaggata gtgaaatcat      2940
     ccagattgag gtgggcaggc cacgtggctc gcatgaatga tacagaagta ccaaaaagag      3000
     tgttacaagg aaagccagga gggcagagag gacgtggtcg accaagagcc agatgggaag      3060
     atggagtaat cgaagatctt aggaagatgg gctatagaaa ctggagagta ttggcaaagg      3120
     acagagagaa atggaaggaa attgtagaag aggccaaggc tcatcatgag ctgtagagcc      3180
     aagaaagaag aagaagaag                                                   3199
//
ID   RTE-11_PPo  repbase;    DNA;    INV; 553 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-11_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-553
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3162-3162 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..538
FT                 /product="RTE-11_PPo_1p"
FT                 /translation="SLEIRCRIEQARNAFFRLRTLLCNKKLNIELRMRLAR
FT                 CYVFSILLYGVEAWTLTESMCKKVEAFEMWVYRRMLRISWRDKIKNVTVLE
FT                 RMKKKTEVIYTVKKRKLQYLGHIMRNAKYELLQLIVQGKIHGKRSVGRRRT
FT                 SWLKNLRQWYGKSTRSLFRAAVSRTKVALMIAELRKKMAL"
XX
SQ   Sequence 553 BP; 191 A; 113 C; 136 G; 112 T; 1 other;
     cagtctcgaa ataagatgcc gcatagaaca agcccggaac gcttttttca gacttaggac        60
     acttctgtgc aacaaaaagc tgaacatcga gctamggatg cggctagcgc gttgttatgt       120
     tttctccatt ctcctgtacg gcgttgaagc gtggacccta acagaatcga tgtgcaaaaa       180
     agtcgaagcc ttcgaaatgt gggtatacag gagaatgtta aggatatcct ggagagacaa       240
     aattaaaaat gtaaccgtgt tagaacgcat gaagaagaag acagaagtga tatatacagt       300
     taagaaaaga aagctgcagt acctaggtca cataatgcga aatgccaaat acgaattact       360
     gcagctcatc gtacaaggca agatccacgg aaagcgaagc gtaggtcgaa gaagaacgtc       420
     ctggctcaaa aacctacgcc agtggtatgg aaagagcacc cgttcactct tcagagccgc       480
     ggtgtcaaga acgaaagtcg ccctaatgat cgccgaactt cggaagaaga tggcacttta       540
     agaagaagaa gaa                                                          553
//
ID   RTE-11_PXu  repbase;    DNA;    INV; 464 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-11_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-464
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3091-3091 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..431
FT                 /product="RTE-11_PXu_1p"
FT                 /translation="IRILRCYVWPVVLYGSEAWTLKANTQKFLEAFEIWCY
FT                 RRMLRISWTEKISNVRVLQRVGTKRELLQTVKKRKVAYLGHVLRHEKYELL
FT                 QLIMMGKIAGRRRVGRRRKSWLRNIREWTNIASVEQLFRLAQDRKGFAELT
FT                 ANLQ"
XX
SQ   Sequence 464 BP; 149 A; 93 C; 125 G; 97 T; 0 other;
     gaataagaat actccggtgt tatgtctggc cagtcgtatt atacggtagc gaagcctgga        60
     cattgaaagc caacacccag aagttcctcg aagctttcga gatatggtgc taccgtagaa       120
     tgctacgcat aagttggaca gagaagattt ccaatgtgcg ggtcctccag cgcgtcggca       180
     caaaacgcga attattgcag accgtcaaaa agagaaaagt tgcatattta ggccatgtct       240
     tgcgacacga aaaatatgaa cttcttcaac tcattatgat gggcaaaatc gcaggcagaa       300
     gacgagttgg aaggaggaga aagtcgtggc taagaaacat ccgggaatgg accaatattg       360
     ccagcgttga acaacttttt cgcttggcac aggacaggaa agggttcgct gagctgacgg       420
     ccaacctcca gtaatggaga ggcattggaa gaagaagaag aaga                        464
//
ID   RTE-12_Hmel repbase;    DNA;    INV; 1025 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-12_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1025
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..908
FT                 /product="RTE-12_Hmel_1p"
FT                 /translation="VRQGDPLSPKLFSAVLEMIFRKLEWDNLGLNIDGRNL
FT                 THLRFADDIVLFAKTPEDLNRMLNDLASESEKVGLKLNSEKTKAMTNGYKS
FT                 SINVGESQISYVEEYIYLGQLISPTENINKEIERRIANSWRRYWGLKEVMK
FT                 DKNFHIATKSKLFNVCILPILTYGSQTWAITRNVINKVANCQRAMERSMLG
FT                 VKRKDRIRSINIRSKSKVQDVTLKIKRLKWKWSGHIIRGNEKWTKTVTQWY
FT                 PRDGKRKRGKQHKRWDDDIRQVAGTTWSRVAKDRIEWSRLEEAFANWQTDL
FT                 QKMKKDQIYE"
XX
SQ   Sequence 1025 BP; 421 A; 137 C; 221 G; 246 T; 0 other;
     gagtaaggca aggagatcct ctctctccaa agcttttctc tgctgttttg gaaatgatct        60
     ttaggaaact tgagtgggac aatctaggcc taaacataga tggccgcaat ctaacacact       120
     taagatttgc cgatgatatt gtgttatttg cgaaaacacc agaagaccta aacagaatgt       180
     taaatgattt agcatctgag agtgagaaag taggattaaa attgaattct gaaaaaacaa       240
     aagcaatgac taatggatac aaaagcagca taaatgtagg agagtcacaa attagttatg       300
     ttgaggaata tatatacctt ggacagctga tatcacccac agaaaacata aataaagaaa       360
     tcgaaagaag gatagcaaac agttggcgaa ggtactgggg cctaaaggaa gtaatgaagg       420
     acaaaaattt ccatatagca acaaaaagca aattattcaa tgtctgcatc ttgccaatat       480
     taacatacgg aagccaaacg tgggctataa caagaaacgt aatcaacaaa gttgctaatt       540
     gccaaagagc aatggaaaga agcatgcttg gagtaaagag gaaagacaga ataaggagca       600
     taaacattag gagtaagtca aaggtacaag acgtaacatt aaaaataaaa agattaaaat       660
     ggaagtggtc gggacatata attagaggaa acgaaaagtg gactaaaaca gtaacacaat       720
     ggtacccaag ggacggcaaa aggaagagag gtaaacaaca taaaagatgg gacgatgata       780
     ttaggcaggt cgcaggcaca acatggagca gagtagctaa agatagaata gaatggagta       840
     ggttggagga ggcctttgct aactggcaaa cggacttaca gaaaatgaaa aaggatcaaa       900
     tatacgaata attttaataa atattatatt gtattagtat ttatattgta gtagtgaaac       960
     aactagttaa ttgtatattc tgttatatcc gaataaaagg cttatttatt tatttattta      1020
     tattt                                                                  1025
//
ID   RTE-12_HMM  repbase;    DNA;    INV; 2064 BP.
XX
AC   .
XX
DT   21-FEB-2013 (Rel. 19.10, Created)
DT   21-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-12_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-2064
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2819-2819 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. likely 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1858
FT                 /product="RTE-12_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="EREDLISNRTENREKITNISKEITKAIRDHRKARRLH
FT                 IIREQISKTGGIKRASKQLKEYSTWILKTIKKDKDNNIHTTTKRQHILKTA
FT                 TDFYKELYTDNLKEQTDDTTFKDNINQEPIPQILQSEVRRAIQTQKIGKSP
FT                 GDDKITNELLKATIEQIIKPFAHICNQILDTEQIPSQWTSSTIILLHKKGD
FT                 KSNINNYRPISLIPNLYKIFIKIILERLTKQLDSNQPIEQAGFRSDFSTID
FT                 HIHTVKQVIEKCNEYNRPYYLSFVDYNKAFDSLKHSYIWDSLRNQGVEQKY
FT                 IRIIKQIYEKSTAKIQLEKTGNLFQIQRGVRQGDPLSPKIFNAVLENIFRQ
FT                 LNWDNFGININGEKLHHLRFADDIVLFAEDPDTLQLMLQQLASESKKAGLS
FT                 MNTSKTKLMTNMTKVKIEVEEEIEYVNEYIYLGQVISVKDLPNKEVDRRIN
FT                 NTWQRYWSLREIMKNKSVPISEKSKIFNTCILPCLTYGCQTWPLSQKIEHK
FT                 LGVCQRGMERSMMGLRLKDKCKATKIRSITKVLDVKVKTRTLKWKWTGHMM
FT                 RSHAGKWTKKVSEWYPRNGKRRRGRQIKRWEDDLPKGWRRTALDRHKWREL
FT                 EEAYVVGQPDLVADTSRNNNI"
XX
SQ   Sequence 2064 BP; 895 A; 358 C; 369 G; 442 T; 0 other;
     ggagagagaa gatttgatta gtaatagaac agaaaaccgt gaaaaaataa caaacattag        60
     caaagaaatc acaaaagcaa taagggacca tagaaaagca aggcggcttc atataataag       120
     agaacaaata agcaaaacag gaggcattaa aagggcttcg aaacaactaa aagaatattc       180
     tacatggata ttgaaaacga taaaaaaaga taaagacaac aatattcata ctacaaccaa       240
     acgacaacac atcttaaaaa cagcaacaga tttttacaaa gaattatata cagacaatct       300
     aaaggaacaa acagacgata caacatttaa ggacaatata aaccaagaac caatcccaca       360
     gatattgcaa agcgaagtaa gaagggctat tcaaacacaa aagataggaa aatcacctgg       420
     cgatgataaa ataactaatg aactactaaa agcaaccatt gaacaaataa taaaaccttt       480
     tgctcatata tgtaaccaaa ttttagacac agaacaaata ccctctcaat ggacatcttc       540
     aacaatcata cttttgcata aaaagggaga caagagtaat ataaacaatt atagacctat       600
     cagcttaatc ccaaacctgt ataaaatatt cataaaaatt atactagaac gcctgaccaa       660
     acagttagac agtaatcagc ctatagagca agctggattc cgatccgatt tctcaacaat       720
     tgatcatata cacactgtca agcaagtaat agagaaatgc aacgaataca accgcccgta       780
     ttacttatcc ttcgtcgact ataataaagc atttgactcc ctgaagcata gctacatatg       840
     ggactcattg agaaaccaag gggttgagca aaaatatata agaataataa agcaaatata       900
     tgagaaaagc acagcaaaaa tacaactaga aaaaacagga aatctattcc aaattcagag       960
     aggagttaga caaggagacc cgctgtcacc caagatattc aacgcagtct tagagaacat      1020
     cttcaggcaa ctcaactggg acaacttcgg catcaatatc aatggagaaa agctacacca      1080
     cctgagattc gcagacgaca tagtcttgtt tgcagaagat ccagacaccc tacaactaat      1140
     gctgcaacaa ctagcatcag aaagcaaaaa agcaggacta tcaatgaata ccagcaaaac      1200
     caaattaatg actaacatga ccaaagtcaa aatagaagtg gaggaagaga ttgaatatgt      1260
     caacgaatat atatacctgg gtcaagtaat atcagtaaag gatctgccaa ataaggaagt      1320
     agacagacga ataaataaca cctggcaaag atactggtct ctccgtgaaa taatgaagaa      1380
     taaatcagtg cccatttcag aaaaatcaaa aatatttaac acatgtatcc tcccatgcct      1440
     cacctacggc tgtcaaactt ggccattatc acagaaaatt gaacacaagc tgggagtatg      1500
     ccaaagagga atggaaagga gcatgatggg cctgagattg aaagacaaat gcaaagcaac      1560
     aaaaatcagg agcattacca aagtgttgga tgtcaaagta aaaacaagaa ctcttaagtg      1620
     gaagtggact ggtcacatga tgagatcaca tgcaggaaag tggaccaaaa aagtctcaga      1680
     atggtaccca agaaatggaa aaagacggag agggagacag attaaaagat gggaagacga      1740
     cctgccaaag gggtggagac ggacagcact agaccggcac aagtggaggg aacttgagga      1800
     ggcctatgtc gtaggacagc ctgacctggt agctgacact agcagaaata ataatattta      1860
     acaataaaaa aaaaaattta aatttgaaaa ataataataa taatgataat aacagttgga      1920
     aaaaaaaagg acaatttcag ttaatattct attcttatgt tagtaaatat tttcatatat      1980
     tgtgtaaaat gttagttata agtaaaacaa attatgtaaa caggtcagag aaaataaagg      2040
     ctctttttat ttttatttta ttta                                             2064
//
ID   RTE-12_LMi  repbase;    DNA;    INV; 3322 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3322
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3473-3473 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(470..1066,990..1448,1382..1774,1690..2322,
FT                 2253..2642,2646..2924)
FT                 /product="RTE-12_LMi_1p"
FT                 /translation="MCRSLQTGKLAIVEREMDLHELDVLGLSETHWRGCGH
FT                 FMTQSKNTMYFSGSEDVSRNGVAIXIPKKLCNAVMGYEPVCNRIISIKMKA
FT                 SPCNINIIQVYTPTAVSSDIEIDXFYELLENTIRKVPKKEILVIQGDFNAK
FT                 TGETVDDGHMRSVVGLYGLGVRNERGERLLEFCVNNNLSVCNTLFSTSSKT
FT                 SIHLDFSWGIITYLSVIPSFQHHPRRRYTWISPGDRVRNQIDFILVRQRWL
FT                 TSVLDCKTYPGADCGSDHVMLYMKMWIKLKLIKKKQLREIRLTDKTTLKEF
FT                 GERIRPKLQKLIEEGVAPRIWDKMKETISSSLTEQVTKTPQAKLPGFRTIL
FT                 FYSSKNGAHDPSSKAPWISNNTLLLIEERSTLRKRGIQTAQDGEAYKVLCR
FT                 KIQRSCRKDKTQFLASICDDIEQHRKLNETHDLFKKXSSITREFKPHTLMI
FT                 EDVDGSIITDKLLQWLGGNNTVKHCIAKESTSRKRTFVQTIAMARWKQYCE
FT                 TLYCKGINIEEENICIESNEEPDIMYSEIENAIKHLKNNKSPGIDGISGEM
FT                 LTAMGEEGMHALHLICNTVWKTGEWPKDWTTSVLIPLHKKGSVKDCXNYRT
FT                 IALISHASKVLLHIMNQRLRNFLQFHISAEQAGFVSGKGTREAVLNLRQIT
FT                 EKCHEFCVPAYICFLDYKKAFDCVMWDKLWHVLTSMGFQNTWYPYLCHVGQ
FT                 VVARAHEYGVPKHLVSLLKGLYNSHTATIKVDGEYSEFFDVTNGVRQGCIL
FT                 SPQLYNIYAEYVIRKALDGWNGGISIGGRKINNLRFADDTTLIAGSEEELG
FT                 DLLSRVKGISLNFGLEINMKKNTDGYKSPRLDQHQLTGCLKDLEIVSDYVY
FT                 LGSLINCTGKCDKEIRRRIILGRAAMVKLTKIWQNRAISKTTKMRLVEALV
FT                 FPIRMRDLDRERQ"
XX
SQ   Sequence 3322 BP; 1090 A; 645 C; 799 G; 784 T; 4 other;
     ggtcgcaagc ccggggcctc atctcacagt gatgaggaag gaggagcggg aggagtatca        60
     acctcgttaa aaaaccaggg tccttctggc tccggaaggt agtaccctgt catagggccc       120
     cttgccaggg taacggcgaa gacctcaacg gcatctgcgg cggagaagat ggacttcgga       180
     atggcgtcga tggcggaaga ggcaaacctg tagtgtctgt actccagagg agcggctaca       240
     aaaggcgtct gactccatgt taggggcggc ctcgtttaac agtggaaggc aacgggaaac       300
     accactgcta tattcccaag acaacctcat ggctttactc atcttaaatt agattccaga       360
     gtaagtcccc cagtcggatc tccggggggg acagggttga gaggagcctc ggaatgtaaa       420
     gatcagtcta aaccatcctt gcgaagtatc aaaaggatag cagcctggaa tgtgcaggtc       480
     tttgcagaca ggaaagcttg ctatcgtgga gagagaaatg gatcttcatg agctagacgt       540
     acttggactc agcgagacac actggagagg atgtggccac ttcatgactc aatcaaagaa       600
     tacaatgtat ttttctggat ctgaggatgt gagtagaaat ggtgttgcta tamtgattcc       660
     taagaaactc tgtaatgccg tcatgggcta tgagcccgtt tgcaatagaa taatctccat       720
     taaaatgaaa gcctctccgt gcaatatcaa catcattcag gtttatactc ccacagcagt       780
     gtcatcagac atagaaatag atkaattcta tgagttacta gaaaacacca tcagaaaggt       840
     gcccaaaaag gaaatactag tcatccaagg tgactttaat gcaaagaccg gtgagaccgt       900
     agatgatgga cacatgagat ctgtggttgg actttatggc ttgggagtga gaaatgaacg       960
     tggggagcgg ttactggaat tttgcgtgaa taataactta tctgtctgta ataccctctt      1020
     ttcaacatca tccaagacgt cgatacacct ggatttctcc tggggatagg gttagaaatc      1080
     aaattgattt cattttggtg agacaacgtt ggcttacttc ggtcctggat tgcaagacct      1140
     atcctggagc agactgtggc agtgaccatg tcatgctgta tatgaaaatg tggataaaac      1200
     tgaagttgat aaaaaagaaa caactaagag agattcgtct aacagacaaa actaccctca      1260
     aagaatttgg tgaaagaata agacccaaac tccaaaaatt aatagaggaa ggagtagctc      1320
     ccagaatatg ggacaaaatg aaagaaacaa tcagttcatc tctcactgaa caggttacta      1380
     agacccctca agcaaagctc cctggatttc gaacaatact cttttactca tcgaagaacg      1440
     gagcacacta aggaaacgtg gcatacaaac tgctcaagat ggagaagcgt acaaagtact      1500
     ttgccgtaaa atacagcgca gctgccgaaa ggacaagacg cagtttcttg ccagtatttg      1560
     tgatgacata gaacaacatc gaaaactaaa tgaaacacat gacctattca agaagawaag      1620
     cagcatcacc cgagagttca aaccgcacac gttgatgata gaagatgtag atggcagtat      1680
     tattactgac aaactattgc aatggctagg tggaaacaat actgtgaaac actgtattgc      1740
     aaaggaatca acatcgagga agagaacatt tgtatagaat caaacgaaga acctgatatt      1800
     atgtacagtg aaatcgaaaa tgccatcaag catttgaaaa acaacaaatc cccaggtata      1860
     gacggtattt ccggagaaat gctaactgcg atgggagagg aaggcatgca tgctctacat      1920
     ttaatatgta atacggtgtg gaaaacgggg gaatggccta aagactggac tacgtctgtt      1980
     ttaattcctt tgcacaaaaa aggatcagtt aaggattgtw ccaactatag gaccatagca      2040
     ttaatatcac atgccagtaa agtcctccta catataatga atcaacgcct tagaaatttc      2100
     cttcagtttc acatttccgc agaacaagca ggttttgtgt ctggcaaggg tactcgagag      2160
     gcagtcttga atttaaggca gataactgaa aaatgtcatg agttctgtgt ccctgcctac      2220
     atctgtttcc tagattacaa aaaggccttt gattgtgtca tgtgggacaa gttgtggcac      2280
     gtgctcacga gtatggggtt ccaaaacacc tggtatcctt actaaaaggt ctttataata      2340
     gccataccgc aaccataaaa gtagatggtg aatactcgga gtttttcgat gtgacaaatg      2400
     gcgttagaca aggttgcata ctgtcacctc agctctacaa catctatgca gagtatgtaa      2460
     tcaggaaagc gctggatggc tggaacggtg ggatttcaat tggcggcagg aaaatcaaca      2520
     atttacgctt cgcagatgat actacactca tagcaggaag tgaggaagaa cttggtgatc      2580
     tgctctcaag agtgaaaggc attagtctaa attttggtct agagataaac atgaaaaaaa      2640
     actaaactga tggttataaa tcgccaaggc tggatcaaca ccaacttaca ggatgtttaa      2700
     aggatcttga aatagtgagt gactatgtat atctaggctc tctgatcaat tgcacaggaa      2760
     agtgtgacaa agagataaga cgacgaatca ttcttggccg agccgcaatg gtcaaactca      2820
     ccaagatctg gcagaatcgg gcaatatcca agacaacaaa gatgcgcttg gtggaagcgt      2880
     tggtgtttcc tatacggatg cgagacctgg accgtgaaag gcagtgataa gagccgcatt      2940
     gatgccttcg agatgtggtg ttggcggaag atgctgcgtg taccatggac acaaagaaga      3000
     acaaatgctt caataataga agaacttcac atcaccagaa ggttatcttc tcgtgttagc      3060
     caaaaatact tcagttcctt gggcacatct tgagaaggaa aggggataat ttagagaaat      3120
     tgaaggcaga agaccacgag ggagagcagc aagcagatgg ttggatcaag cgaagaagat      3180
     caccagccta cctctcacat catattaaga aaggctgaag atcgctgtgg atggagacat      3240
     ctgactgaag tttcaactat ctaagaatga atgaggaaat gaggtcacga cactcagcaa      3300
     tgagtaaaac gactaatgat ga                                               3322
//
ID   RTE-12_PPo  repbase;    DNA;    INV; 353 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-12_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-353
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3163-3163 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 353 BP; 129 A; 53 C; 96 G; 74 T; 1 other;
     caggaagtcg ttggatccgt aaggcgcagg accgcattgt gtgtaaggta ttgggtaagg        60
     cctatctcca acagtgggca gaaataggct gatgatttma ataatttaaa cgatccatgt       120
     gtaggttact tatctgtgaa ttaaatacac ataatatagg acacatggac aggcccacca       180
     ggcgcaagga aagtcggcag accaaaacaa cgttggaaag acgatatcgt acaagaagtg       240
     ggaaaagaat ggatgaagaa agggaaatat agggacttat ggaaaaggtt ggaggaggcc       300
     tatacccaga atggggtcca gttactggaa taaaaaggct aaataaataa ata              353
//
ID   RTE-12_PXu  repbase;    DNA;    INV; 299 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-12_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-299
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3092-3092 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..279
FT                 /product="RTE-12_PXu_1p"
FT                 /translation="RSREEXIGQQIKRRKWSWIGHTLRRDPSHIPREALEW
FT                 IPLGTRRRGRPKQTWRRSVAADMKAIGLTWPETKRRAQDRANWRRTVDALC
FT                 PTTGT"
XX
SQ   Sequence 299 BP; 79 A; 81 C; 90 G; 48 T; 1 other;
     cgtagtagag aggagmcgat tggtcagcaa ataaaacgcc gcaagtggtc atggatcggc        60
     cacacgcttc gtcgggatcc cagtcatatt cccagggagg ccctggagtg gatcccgcta       120
     ggaacaagaa gacgtggccg tcctaaacaa acttggcggc gctcagtagc tgccgacatg       180
     aaggcaattg ggctgacatg gcccgagacc aaacgcagag cccaagatag agcgaactgg       240
     cggcgcactg tggacgccct ctgccccact acggggacat aggactttaa gtcaagtca        299
//
ID   RTE-13_Hmel repbase;    DNA;    INV; 3598 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-13_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3598
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1269..3509
FT                 /product="RTE-13_Hmel_1p"
FT                 /translation="MDMDFSWWQIQNEIDYIISNSPTSFTDTTVISRLSFF
FT                 TDHRMVRSSLKKFPPRTCQNFRSNTNRPVARNLCNVSCIKFIKDSKSIMID
FT                 KNTGATQKYTKLESLLQNQVASKKEGKSNKLELSEQTMQLVNERKELLGKK
FT                 RNKDNLKAIAETSKNIRTSIRKDRKTKRLQTLQYYIQRTGGVKQALIELRE
FT                 SGKEWVPKLNRKSKTITQRKHIKEIATEFFSQLYQKQNLTAEPKQIQVIIE
FT                 PNLDAVPTILSSEVEKAITIQKLGKSPGPDFITNELLQGSKEVLVPILTQI
FT                 FNELLKTNSVPERWKQSHIILIHKKGDKEDIENYRPISLISHIYKIFAKIL
FT                 LDRISPTLDEQQPVEQAGFRKGFSTIDHIHTLKQIIEKYKEFNKTIYIAFI
FT                 DYAKAFDSVSXDCIDEALLHQGIPVXYIKIIKTIYTNSKGRIKLEELGDEF
FT                 XISRGVRQGDPLSPKLFSAVLENTFRKLNWENFGLNINGKRLNHLRFADDI
FT                 VLFEXNPANLQIMLQSLNEESVKIGLKINTNKTKVMTNSFRHEMKIXNNTL
FT                 SYTDSYTYLGQIISTKDQISAEINTRIALGWKKYWSLKEIMKSKLISMALK
FT                 KKTFEVCILPCLTYGCETWALTKSLREKLAKCQRAMERSILGWKRNDRIRN
FT                 TELRANTKLVDILTKIDQQKWRWTGHMMXDTKGKWSQVVTEWYPRDGKRSR
FT                 GRQHTRWEDEIKLTVGSNWRRVTRDRMQWKMLEEAYAKRHTEYRDIL"
XX
SQ   Sequence 3598 BP; 1466 A; 623 C; 686 G; 808 T; 15 other;
     gaaaaaatta agcctattat tcaagaaaat aacaaattaa aaatggaagt ggaaacattg        60
     aatagaaaaa ttgaggttct ccagataaat gaaaaaagga aaaacgtaat acttcatggt       120
     attcccgaag cagccgaaga aaaacaggac gacttgaata ccctggtcat atctacgcta       180
     acggatatcg acgtacaaat ctgccaagga gaaatcgaca gagttcgtag attgggtaaa       240
     aagaatacgg aagatagcaa gataaggcca attctcctca caatgacaac ccaagggaaa       300
     aaaaatcaga tactgagaaa taaaaggaag atgaaaggtg gttcatatat cactcaggac       360
     ctgccaaaag atgtatatat aaaaaacaaa caaaaacaac tcaacaacaa aaaagaaatt       420
     gagaaaagaa aaaggtcgga aactcctagt ccgcaaagtg tgacaagtga attaaataag       480
     gaaccaaagt taaaaaaact gaatgccttt caatactttc gcggaagatc atcatctctg       540
     tcagacaaga ctacaacgaa aaaccagtaa tagtttaccc ccaaccggaa aaaaacaaca       600
     atatcaagta aattatagaa gtctcccaac acggttggtc cccgcgggag aactagacca       660
     ctaccctcta accaaaagat gtgaagtatt taacatagca acacttaaca caagaactct       720
     taggactcca gaaagtttaa tagagctaag aaaggccctt gaagaaatta aatttgatat       780
     cttgggcatt agtgaaatga gaagacaagg cgaaaaaata gaagaacatg atgatttcat       840
     ataccataaa ggaggcccaa ctgaccaaag aggtgttggt tttttgatca aaaagtacct       900
     taaaagcaat attcaagaat ttrttggaat ctcagataga atagcggtac tggtaattgc       960
     tcttcctgaa tacmakaagc catggtcttt aatacaagtt tacgctccka ctgaacaagc      1020
     agaattaact gaactygaac acttttatga agatttatca catacaataa aaaaggaaag      1080
     aagtaacaat atcctctaat gggggacttt aatgcacaag taggcaccaa aatgaatact      1140
     gcagaacatg tccttggaga atttggysat ggcaagagaa gtcgcaacgg wcagaaactg      1200
     gttgaatttc ttatggaaca taacttaaca gtaatgaact cagttttcct gaaaaattac      1260
     aaaaataaat ggacatggat ttctcctggt ggcaaataca aaacgagata gattatatta      1320
     taagcaactc accaaccagt ttcacggata ctacagttat atccagacta agtttcttta      1380
     ccgatcaccg tatggttcgc agctctctaa agaaattccc acccagaacc tgccaaaact      1440
     tcagaagcaa cactaatcgt cctgtagcaa gaaacctgtg caacgtaagt tgcataaaat      1500
     tcataaaaga ttcaaaaagc attatgatag ataaaaacac aggggcaaca caaaaatata      1560
     caaaattgga aagcctatta cagaaccaag tagcttcaaa aaaggaagga aaaagcaata      1620
     aacttgaact aagtgagcaa actatgcaac tagtcaacga aaggaaggaa ctattaggga      1680
     agaaaagaaa caaagataac ttgaaagcta ttgctgaaac gagcaagaac ataagaacta      1740
     gtataaggaa ggatcgcaaa actaaaagac tgcaaactct gcaatactat atacagagaa      1800
     ctggaggtgt gaaacaagca cttatagagc ttcgagagtc aggcaaagaa tgggtaccga      1860
     aactgaatag aaagtctaaa actatcacac aaaggaagca tataaaagaa atcgcaacag      1920
     aattttttag ccagttgtac caaaaacaaa atcttactgc cgaacccaaa caaatccaag      1980
     taataatcga acctaatcta gatgctgtcc ctactatttt atcaagtgaa gtagaaaaag      2040
     caataacaat ccaaaagcta ggaaaatccc ctgggccaga ctttattaca aacgaactcc      2100
     tacaaggaag taaagaggtg ttggtgccta ttcttaccca gatcttcaat gagttgttaa      2160
     agaccaattc cgtaccagag cgatggaaac aatcgcatat catcttgatt cacaaaaagg      2220
     gcgataaaga agatatagaa aaytaccgac ccattagtct tatctctcac atttataaaa      2280
     tatttgcaaa gatactactg gatagaatca gccctacatt agacgaacag caacctgttg      2340
     aacaagcagg gtttagaaag gggttttcaa ccattgacca catccataca ctcaaacaga      2400
     ttattgaaaa gtacaaagag ttcaataaaa ctatatatat agcgtttatc gattacgcaa      2460
     aggcattcga tagtgtaagc yacgactgca tagacgaggc cctcttacat caaggtatac      2520
     cagtagahta cataaaaatc attaaaacaa tatataccaa tagtaaaggt aggataaaat      2580
     tagaagaatt aggggacgaa tttsaaataa gcagaggagt gaggcaggga gatccacttt      2640
     ctcctaaact gttttcagca gtcctggaaa acactttccg aaaattaaat tgggaaaatt      2700
     ttggtttaaa tataaatggg aaaaggttga accatctacg tttcgccgac gacatagtgt      2760
     tgttcgaara aaacccagct aatttgcaaa ttatgttgca gagcttaaac gaagagagtg      2820
     taaaaatagg tcttaaaatt aacaccaaca aaacaaaagt aatgaccaat tcatttaggc      2880
     acgagatgaa aatagahaac aacaccttgt catacacgga cagctacaca tacttaggcc      2940
     aaatcatttc aaccaaagac caaatttcag ccgaaataaa tacaaggatt gcattaggat      3000
     ggaaaaaata ctggtccctt aaagagataa tgaaatctaa acttataagt atggcattaa      3060
     aaaagaaaac ctttgaggtc tgcattcttc catgcctaac atatgggtgc gaaacatggg      3120
     cattgacaaa atctctaaga gaaaaacttg ctaaatgtca aagggctatg gagaggagca      3180
     tattaggttg gaaaagaaat gacagaataa ggaatactga actccgagcc aatactaaat      3240
     tggtggacat actgaccaaa atagatcaac agaaatggag atggacaggg catatgatgv      3300
     gagacacgaa aggtaaatgg agtcaggtgg taacggaatg gtacccaaga gatggcaagc      3360
     gaagccgcgg gaggcaacac acaagatggg aggacgaaat taagctaacg gtaggatcaa      3420
     attggagaag agtcacacgg gacaggatgc aatggaagat gttagaggag gcctatgcca      3480
     agaggcacac cgaatataga gacattttgt aactttagtt gtaatatttt gtactaaata      3540
     tgaatgtata agtgtaactt aatttcggaa taaacgggct tattattatt attattat        3598
//
ID   RTE-13_LMi  repbase;    DNA;    INV; 2701 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2701
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3474-3474 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(347..598,610..999,1019..1615,1612..1887,
FT                 1891..2679)
FT                 /product="RTE-13_LMi_1p"
FT                 /translation="HGSHQMARHKINDHFAISQMWGAPFLMSETEGCRLRK
FT                 DHHLVIAEVRLKIATGHQNDRQKRFNIRKLQNKYIRKRVCARVEKLIRRRI
FT                 KVRKRQESEGKWNKIKETFLNSSEKILGFQDTRRKPWISEYTWQKIEERRE
FT                 IKALINQCRDDEEKQRLRARYNEVHRQVKSARSDRRKQVEQLAERAQAAAK
FT                 GAIGKNYIISPNSCPGKALAKVSQTTDQQRRAAEALEGIFQRGIQYDPDPS
FT                 RRTRARGTRSTGNAGNANKYSPPPPPSKSEIIKALKSCKNNKAPGVDSVVA
FT                 ELLKVDYEATADMLLPLFLEIWNTETIPEDWRKGILIKLPKKGDLTKCNNW
FT                 RGITLLSIPSKVFSRIVLNRLRVPIDSKLRKEQAGFRTSRSCTDQINTLRI
FT                 IIEQSMEYWSPLHXAFVDFFLKKPLIECNEKLFGKTMQNYGVPPKIISIVR
FT                 MMYREYTCQVKHEGKLSEPFTLNSGVRQGCLLSPLLFLLTLDGVMKKVTQE
FT                 KRRGIQWTLAPGDLDFADDICLLSHTFKDMSEKLKELETEAQRVGLKINTA
FT                 KTKEIRMNSKNKNPLAVKEEEIEQVENFCYLGSIVSKNGGATEDVESRIKK
FT                 AKGAFAQLRPVWTSREILLKVKLKIFESNVKSVLFYGCETWKVTAQIKAKI
FT                 QTFINKCLRIILGVRWPNVISNQELWQRTQQRKAEVTVKERKWRWIGHTLR
FT                 RGPQHIPKQALEWNPQGARKRGRPRSTWRRTVEAEVAAAGHSWSNIKKMAT
FT                 NRVRWRALICALCSTPE"
XX
SQ   Sequence 2701 BP; 971 A; 495 C; 674 G; 560 T; 1 other;
     gagtggaagc caatctagat cggatattac agcacagttc aagactcgag taagaaatat        60
     ttatcttgtg cagtgttacg cacccacgga acaagcagac acccaagaaa aggacaactt       120
     ctatggacag ttgggagagg ttctagacag gatcaaaaag aaagacataa aaattgtgat       180
     gggagaccta aatgccaaga tggcgtgaaa atgaagggct agaatagtta tgggaaaaca       240
     tggtattgga gcccaaaatg acaacggtgc ttcattgaca tgtgccttaa taaaagactg       300
     gttattggag gttcaatgtt cccacacaaa ctctgccata aagtaacatg gctctcacca       360
     gatggcaaga cacaaaatca atgatcattt tgcaattagt cagatgtggg gtgctccctt       420
     cttgatgtcc gaaacagaag ggtgcagact gcggaaggac caccatctcg taatagctga       480
     agtacggtta aagattgcta ctggtcatca aaatgacagg cagaaaagat tcaatattag       540
     aaaacttcaa aacaaatata ttagaaaaag agtttgtgct agagttgaaa aactgatata       600
     gtcagttaga ggaggaggat caaagtgagg aagaggcagg aaagtgaagg gaagtggaat       660
     aaaattaagg aaaccttcct aaattccagt gagaagatat taggattcca ggacaccaga       720
     aggaagccat ggatatcgga gtatacatgg cagaagattg aagaaagaag agaaataaag       780
     gccttgatca accaatgtag ggatgatgaa gaaaaacaac gccttagggc aagatacaac       840
     gaagttcatc ggcaagtgaa gagtgctaga tctgatagaa gaaagcaagt agaacagctt       900
     gcagaaagag cccaagcggc agcaaaaggg gcgattggaa agaattatat aatatcacca       960
     aacagctgtc ccggaaaagc tttagcgaaa gtaagccagt gaggtcgaaa gagtgtgaac      1020
     tactgaccaa cagcgaagag cagctgaagc gctggaagga atatttcagc gaggtattca      1080
     atacgaccct gacccctcaa gaagaacaag agcaagagga accagatcaa caggaaatgc      1140
     cggtaatgca aataaatact cacctccccc cccccctagc aagagtgaaa ttatcaaagc      1200
     tcttaagagc tgcaagaata acaaggcacc cggtgtagac agtgtggtgg cagaattgct      1260
     caaggtagat tatgaagcaa cagcagatat gttactacca ctgttcctag aaatctggaa      1320
     cacagaaact atcccggaag attggaggaa gggaatcctt attaagttgc ccaagaaagg      1380
     agacctgaca aagtgcaaca actggcgagg catcacactt ttgtcaatac ccagtaaagt      1440
     attttcaagg attgtattaa accgcctcag agtgccaata gatagtaagc tcaggaaaga      1500
     acaggctggc ttcagaacaa gcagatcatg cactgaccaa atcaacacct tgaggatcat      1560
     tattgaacaa tctatggaat actggtctcc gctacatatk gcttttgttg atttttgaaa      1620
     aagcctttga tagagtgcaa cgagaagcta tttgggaaaa caatgcagaa ttacggagta      1680
     cctccaaaga tcatcagtat cgtgaggatg atgtacagag aatatacttg ccaggtgaaa      1740
     catgagggaa aactctcaga accattcaca ctcaattctg gagtaaggca aggttgtttg      1800
     ctttcaccac tgctgttctt gctaacatta gatggtgtta tgaagaaggt aacccaagag      1860
     aaaaggagag gtatacagtg gactctatga gcgcctgggg acctggactt tgcggacgac      1920
     atctgccttc tgtcccacac tttcaaggat atgagcgaga agcttaagga actggaaaca      1980
     gaagctcaga gagttggatt aaaaataaac acggcgaaga ctaaagagat taggatgaac      2040
     agtaagaaca agaacccact agccgtgaaa gaagaggaga ttgagcaggt ggagaacttt      2100
     tgttatctgg gaagtattgt ttccaaaaat ggaggggcga cagaagacgt tgaaagtagg      2160
     atcaaaaagg caaaaggggc ctttgcccag ctgcgaccag tttggacatc tcgtgaaata      2220
     ttgttgaagg taaagcttaa aatctttgaa tcaaatgtaa aatctgttct cttttacggg      2280
     tgtgagacgt ggaaggtgac agcacaaatt aaagcaaaaa tacaaacctt catcaataaa      2340
     tgtttgagga ttatactggg agtacgctgg ccaaatgtta tctcaaatca agaactatgg      2400
     caacgcaccc agcaacggaa agccgaggta accgtaaaag aaaggaaatg gagatggata      2460
     ggacacaccc tgagaagagg tccgcaacat attccaaagc aggctttaga atggaaccca      2520
     caaggagcaa ggaagagagg cagaccaagg tcgacctggc gcaggactgt tgaagcggag      2580
     gtggcagccg ctggccactc ttggagtaac atcaagaaga tggcaacgaa cagggtcaga      2640
     tggagagctc taatatgtgc cctatgctcc acaccggagt aaaaggaatc aagtcaagtc      2700
     a                                                                      2701
//
ID   RTE-13_PPo  repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-13_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-342
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3164-3164 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..237
FT                 /product="RTE-13_PPo_1p"
FT                 /translation="TGHMLRESKEKWTKLTTEWYPRDSKRKRGRQNKRWED
FT                 DLKKIAGPVWTRLARDKNEWKSLEEAFVGRQAFPHKQPVADN"
XX
SQ   Sequence 342 BP; 138 A; 47 C; 76 G; 80 T; 1 other;
     acgggacaca tgttaagaga aagcaaagag aaatggacca agttaacaac agagtggtat        60
     ccaagagata gcaaaagaaa aagaggcaga caaaacaaaa gatgggagga tgacctcaag       120
     aaaatagctg gtccagtatg gacacgtttg gcaagagaca agaatgagtg gaaatctcta       180
     gaggaggcct ttgtcggtag acaagctttt ccgcacaaac aaccagttgc cgataattaa       240
     agtgaaaatg gtaattttaa ttgattagaa aaatctattt ttagtaacta ggcacttatw       300
     attaattgta atctgaaaag caataaaggc tattttattt ta                          342
//
ID   RTE-13_PXu  repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-13_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-197
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3093-3093 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 197 BP; 42 A; 55 C; 68 G; 32 T; 0 other;
     catatctcgg gaccccgact ggccgccgac ccatcggtcg gcccaggtac cgctggcgag        60
     acgccgtaga gctggatctg cgggagctac aagcgatgga ctggcaggag aaggcgcaag       120
     acaggcgact ttggcgatct cttgtgtcgg aggccaagac ccactttggg tcgatgcgcc       180
     agcggagtaa gtaagta                                                      197
//
ID   RTE-14_Hmel repbase;    DNA;    INV; 886 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-14_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-886
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..804
FT                 /product="RTE-14_Hmel_1p"
FT                 /translation="LSINGSRLNHLRFADDLVLLEEDPKLLESMIQTLADR
FT                 SRELGLEMNSGKTKMMTNAVQIDITVNGQKLEYEEEYVYLGQIISPRDQMS
FT                 KEIDKRIATGWKAFWALKEITKSKEIGIKIKKKTFDTCILPCITYGCETWA
FT                 LTKCHREKLARCQKSMERSMLGLKLRDKVRSTDIRQKTKITDILARIDKLK
FT                 WRWTGHMLRCKKEKWSKQVTTWYPRDGTXSRGRQMRRWEDDLKMTLGPLWI
FT                 RVAADRNQWKELEEAYATRHTELRDLL"
XX
SQ   Sequence 886 BP; 339 A; 140 C; 208 G; 198 T; 1 other;
     ttaagcataa atggatcacg attgaatcat cttagatttg cggacgacct agtcctattg        60
     gaagaagatc caaaattact ggaatcaatg atacaaacct tagctgacag aagtagagaa       120
     ctaggtctag aaatgaactc cggcaaaacc aagatgatga caaatgcagt gcagatagac       180
     ataaccgtaa atggacagaa actcgaatat gaagaggaat atgtatatct tggccaaatc       240
     atatcaccaa gagaccaaat gtcaaaagaa attgataaaa gaattgcaac aggctggaaa       300
     gccttctggg ctttaaaaga gatcacgaaa agcaaggaaa taggcattaa aatcaagaag       360
     aagacctttg atacctgtat cttaccctgc attacatatg gctgcgaaac ctgggctttg       420
     acaaaatgcc acagggaaaa acttgcaaga tgtcagaaaa gcatggaaag gagtatgcta       480
     ggattaaaac taagggacaa agtgagaagt acagacatca ggcaaaaaac gaaaataaca       540
     gacatcctgg ctcgaattga taaattaaag tggaggtgga ctggacatat gctcaggtgt       600
     aaaaaggaga aatggagtaa acaggtaaca acttggtacc caagggatgg cactagdagc       660
     cgaggacgtc aaatgagaag atgggaggat gacctgaaaa tgacgttagg tcccctctgg       720
     ataagagtgg cggcagacag aaatcagtgg aaagagttgg aggaggccta tgccacaagg       780
     cacaccgaac tgagagacct attatgattt tattttaagt gtttttttag ttataaatgt       840
     gtaaaatgtc tcagtttgga aataaaggct ctattattat tattat                      886
//
ID   RTE-14_LMi  repbase;    DNA;    INV; 3319 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3319
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3475-3475 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           352..3300
FT                 /product="RTE-14_LMi_1p"
FT                 /translation="MMTGFVTKQSGGKIVPNSDLRQGTVSKCVIKDDRRQV
FT                 RIGTWNIRSLSICGKLENVKKEMEEHDIDILGISEIRWPQKGDFWSGNFRI
FT                 IYSGKEGSYAGVGIILRKHVGTRVKSYVQYSDRIIMLRIENDPIDTVIIQV
FT                 YMPTSSHADEEVEQVYEQLEEIMEMVKDKDNLVILGDWNASVGEGEDGNTV
FT                 GKYGLGRRNDRGQQLVDFCKEKELIIANTWFQQPKRRRYTWIAPGDRARYQ
FT                 IDYIMVRRRYRNQAKQCKSYPGADVATDHNLVMLKSNLRLRRKGQNTKGYC
FT                 KYDVKKLRQDSVKERYQKQAQQKVKEIPNGTVNEKWIGLKHSILQAADREI
FT                 GNIKKQATQPWISDHTLELMEERKKFKNSKSEEGIKSYKRLRNMVNREAKK
FT                 DKEEYIMRRCKEVEEKLEKGNIETAYELIKKQFKKVNGRSNNILDENGKRL
FT                 FENKEVGERWKRYIEKLYEDPDEISNLENEETVTKDQLGPSLTKEEYLKAV
FT                 RELKNNKAPGCDALTGEMIQGLDNETHNYIFKLIQDMYETGEIAEDFKKTI
FT                 IIPIPKKPGTIKCEEHRTLSLISHMSKILTKIIYNRIISKIEQNLDEDQFG
FT                 FRRNRGTREAILMLRQIMDKMLDLKRPLFIAFVDLEKAFDNVNWNLLMEIV
FT                 TNVGLDFRDRRIVHELYKNQRGVINIHGEIQEAHIKKGVRQGCNLSPVLFN
FT                 LYIEEGIKECKESMEGIKINGVQIKMIRFADDIAIIEESEENLQKALSRMN
FT                 EILPAKYNMKINTKKTEIMVCSHEQITTDIKINDVPLKQVNVFTYLGSKIT
FT                 PDGKSSADIKSRIAQAKLAFNNKRMLLTSRNIKEETKKAFIKCYVWSVALY
FT                 GSETWTLGVCDKRRLEAFELWCWRRMQKIPWTAKMTNEEVLRRIGEKRALV
FT                 KTIMKRRDKLIGHLYRHNEFIINVMEGMVEGKRGRGRPRLQYLKQIQRDIG
FT                 VESYQEMKRLSENREVWRRRIAANQSSD"
XX
SQ   Sequence 3319 BP; 1343 A; 507 C; 777 G; 692 T; 0 other;
     ctctgaaagt actggagatt ctaggaaacg ccaatacggt cctagaatca atgaaaggaa        60
     aatcctgaca ttcacctcca cggggtagag agggggcaac gtttgcatag caagcggcta       120
     acgaatgcag ggaccgaata tcccccggga taaggggatc ccctatacca agtgccaaag       180
     gcctccatga gggcggatga gcgggtatag gatagggcac tctcttgtcc ttggagtgtg       240
     aaatcgctcc taaaggcgga agaaccagca aggtcaacgg catagaatgg agaaggcaag       300
     agggaaacca ctccattaaa gatccttttg gatatcccat gtcaagcagc aatgatgaca       360
     ggctttgtaa ctaaacaatc cggaggtaaa atagtcccca actcggatct ccggcagggg       420
     acagtctcaa agtgtgttat caaagatgac agaagacagg tcagaatagg aacatggaac       480
     atcagatcac ttagcatctg tgggaaactc gagaatgtta aaaaggaaat ggaagaacat       540
     gatatagaca tactaggaat aagtgaaata cgatggcctc aaaagggaga cttttggagt       600
     ggtaatttta gaatcatata ctctggaaaa gaaggaagtt atgcaggcgt aggaataata       660
     ctaaggaaac acgttggcac ccgtgttaag agctacgtgc aatacagtga cagaataata       720
     atgttaagaa tagaaaatga ccctattgat accgtaataa tacaggtata catgccaacg       780
     tctagtcatg ctgatgaaga agtggaacaa gtatacgaac aactagagga aataatggaa       840
     atggttaagg ataaagacaa cctcgtcata cttggagact ggaatgcttc tgtaggtgaa       900
     ggtgaagatg gaaataccgt gggtaaatac ggacttggta ggagaaatga cagaggacaa       960
     caactagttg acttttgcaa ggaaaaggaa ctaataatag caaacacgtg gttccagcag      1020
     ccgaagagaa gaagatacac atggattgca ccgggagaca gagcacgata ccaaatagac      1080
     tacataatgg taagacgaag gtatcgcaac caagctaaac aatgcaaaag ttaccctggc      1140
     gctgatgtag ccactgatca caatctagtt atgttaaaat ctaatctaag attaagaaga      1200
     aagggacaaa atactaaagg atattgcaaa tatgatgtga aaaagttacg gcaagacagt      1260
     gttaaggaaa ggtaccaaaa gcaggcacaa cagaaagtta aagaaattcc aaatggtaca      1320
     gtaaatgaga aatggattgg actgaaacac tcaatccttc aagcagctga tcgagaaata      1380
     ggaaacatca aaaaacaagc aacacaaccg tggattagcg atcacacact tgagcttatg      1440
     gaagaaagaa aaaagttcaa gaattcgaag agtgaagaag gaataaaaag ttataaaagg      1500
     ctgcgaaaca tggtcaacag agaagcaaag aaagataaag aagaatacat aatgaggcgg      1560
     tgcaaggaag tagaagaaaa gctagagaaa ggaaatatag aaacagccta tgaactgatt      1620
     aagaaacaat tcaagaaagt caatggccga agcaataaca tattagatga aaatggaaaa      1680
     cggctatttg agaacaagga agtgggagaa agatggaaac gttatataga aaaattatac      1740
     gaagatccag atgagataag taatcttgaa aacgaagaaa ctgtcacaaa agatcagtta      1800
     ggaccctcat taacaaaaga agaataccta aaggctgtga gagaactaaa gaataacaaa      1860
     gcaccaggat gtgacgcatt aactggagaa atgatacaag gattggataa cgaaacacat      1920
     aactatatct tcaaactaat ccaagatatg tatgaaactg gagaaatagc agaagatttt      1980
     aaaaagacta tcataattcc tataccaaag aaaccaggca ctataaaatg tgaagaacat      2040
     cgtaccttga gcctaatatc acatatgtca aaaatactaa caaaaataat atataaccga      2100
     ataataagta aaattgagca gaatctagat gaagatcaat ttggatttcg acggaataga      2160
     ggaacaagag aagccatcct aatgttaaga caaatcatgg ataaaatgct ggacctaaag      2220
     agaccactgt tcattgcttt cgtggacttg gaaaaagcct ttgataatgt gaattggaat      2280
     cttctgatgg aaattgtgac taatgttggt ctagatttca gagacagacg gatagtacat      2340
     gaactctaca aaaatcaaag aggggttata aatatacatg gtgaaataca agaggctcac      2400
     ataaagaaag gagtacgaca aggatgcaat ttatcaccag tgctcttcaa cttgtatatt      2460
     gaggagggaa ttaaggaatg taaagagtct atggaaggaa ttaagatcaa tggagtacaa      2520
     attaaaatga taaggtttgc tgatgacata gccatcattg aggagagcga agaaaatctg      2580
     caaaaggcgt tatcaagaat gaatgagatt ctgccagcta aatataacat gaaaatcaac      2640
     acaaaaaaga cagagatcat ggtatgcagc cacgagcaaa ttacaactga tattaagatt      2700
     aatgatgtac cattgaaaca agttaatgta ttcacatact taggaagtaa aattacaccg      2760
     gatggcaaaa gttcagcaga cataaaaagt agaattgcgc aagctaaact agccttcaac      2820
     aataaacgga tgcttcttac atcaagaaat ataaaagaag agaccaaaaa agcatttata      2880
     aaatgctatg tgtggagtgt ggcattgtat ggctccgaaa cttggacact cggcgtttgc      2940
     gacaagagaa gactagaagc atttgaattg tggtgttgga ggaggatgca gaaaatccct      3000
     tggacggcca agatgacaaa cgaagaagtt cttagaagaa tcggcgaaaa aagagcactt      3060
     gtgaaaacga taatgaagag aagagacaag ttaataggtc atctgtatag gcacaatgag      3120
     tttataatta atgttatgga agggatggta gaaggaaaaa gaggcagagg aagacccaga      3180
     ttgcagtact tgaaacagat tcaaagagat ataggagtgg aatcatatca ggaaatgaag      3240
     aggctatccg agaacagaga agtgtggagg agaagaattg ctgccaacca atcttcggat      3300
     tgagaacgag agaagaaga                                                   3319
//
ID   RTE-14_PPo  repbase;    DNA;    INV; 1637 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-14_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1637
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3165-3165 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(139..633,473..1627)
FT                 /product="RTE-14_PPo_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="PDSIQAEVWKYGGNAIQWKLFELLDNIWILEQLPDEW
FT                 KVAVICPVHKKGCKKTCSNYRGIALLPTAYKVLSYVLLARLEPYAEQIIGD
FT                 STHTDGFRRNRSTVDQIFLLKQLMEKKWEYAQSIHSLLVYFSKAYVSVDKN
FT                 SLYAILNNFGILQKLIPPYRNGDQSKWRRNGNTRRAFIRCSFTSARPMSVS
FT                 TKTHSMPYLTTLAYYRSLFPLIEMATKVSKMRVKVGGELTEEFEVLTGLNQ
FT                 GDALSPMLFNIALRHVRRKVLTLDIGIRLNEQYRVIGYADDLALLGQTRKE
FT                 VECSIRTLMTAPSRIGLRINNDKTEYLHMKRYRNTRQKREDLHVEDTVFKG
FT                 TDKFKYLGCTVTDSNTREKEIDTRIHNTLRCSAALHKVLVSRLLSRKTKIR
FT                 IYKTVIRPILSYDCETWTLTLKEEEKLLVAERKMMRTILGPTQREDGSWRA
FT                 RYNLEIERLVGEPNIIGEVKAQRLRWLGHLMRMGEDRGAKKAYLGIPIGRR
FT                 PVGRPRYRWRDAVELDLRELESIGWQATTQDRRRWRSLVSEAKTHFGSLRQ
FT                 RSK"
XX
SQ   Sequence 1637 BP; 493 A; 379 C; 430 G; 335 T; 0 other;
     cttaaaaaga tgtggcggaa gtacttccaa cacctactaa actgccctga gccagagcgg        60
     ccagtcatgc catgtgttga tactaacaca ggtgtagtag ctctaaagct taaaaacaat       120
     aaggcacctg gtatttgacc tgacagtatt caggccgaag tttggaaata cggaggaaat       180
     gccatacaat ggaagctctt cgagttactg gacaacatat ggatcttaga acaactgccg       240
     gatgaatgga aagtggctgt aatctgtcct gtccacaaaa agggatgtaa gaaaacctgc       300
     tccaactacc gaggaatcgc tctgctcccg acggcgtata aggtactctc ctacgtgctg       360
     ctagccagac tcgaacccta cgcggaacaa atcatcgggg attcaaccca cactgatggg       420
     ttccgacgaa accgcagcac tgtagatcag atctttcttc tgaagcagtt aatggagaag       480
     aaatgggaat acgcgcagag cattcattcg ctgctcgttt acttcagcaa ggcctatgtc       540
     agtgtcgaca aaaactcact ctatgccata cttaacaact ttggcatact acagaagctt       600
     attccccctt atcgaaatgg cgaccaaagt aagtaagatg cgcgttaaag ttggtggtga       660
     gctgaccgag gagtttgaag tgctgaccgg acttaatcaa ggagacgcgc tgtcccctat       720
     gttgttcaat atagcactta gacatgtaag aagaaaagtt ctgacattag acatcggcat       780
     acggctgaat gaacaatata gggtgatagg atatgctgac gatttggcgt tgcttggaca       840
     aaccagaaag gaagtggaat gctcaatccg aacattgatg accgcacctt ccaggattgg       900
     gctcagaatt aacaatgaca agacggaata tctccacatg aagcgctaca gaaacacccg       960
     acaaaaacgc gaagacctgc acgtagaaga tacggtgttc aaaggaactg ataaatttaa      1020
     gtatttgggg tgcaccgtca cagattcaaa tacacgcgaa aaggagattg atacccgcat      1080
     ccataacacc ctccgctgta gcgctgctct gcacaaggtg ctggtgtcaa gactgctgag      1140
     ccgtaaaacc aaaatccgta tttacaaaac ggtcataaga ccgatcttga gttatgactg      1200
     cgagacctgg acacttacgc taaaagaaga ggagaagtta ctagtagcgg agaggaagat      1260
     gatgcggacg attctgggtc cgacacagag agaagacggg agctggcgcg cacggtacaa      1320
     cctggaaata gaaaggctgg tgggggagcc aaacatcata ggcgaagtca aagcccagag      1380
     acttcgctgg ctgggccact tgatgagaat gggggaggat cgtggagcca aaaaagcgta      1440
     tctcggaata ccgattggcc gccgacccgt cggccggccc agataccgct ggcgagacgc      1500
     cgtagagctg gacctgcgcg agctagagtc gatcggctgg caggcgacga cgcaggacag      1560
     acgacgctgg cgctctctcg tgtcggaggc caagacccac tttgggtcgc tgcgccaacg      1620
     cagtaagtaa gtaagta                                                     1637
//
ID   RTE-15_Hmel repbase;    DNA;    INV; 1145 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-15_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1145
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1127
FT                 /product="RTE-15_Hmel_1p"
FT                 /translation="TDHLHTVNQIIEKHYEFNRPLYMAFVDFTKAFDSISH
FT                 TSIFQALQNQNIEPFYINLLRHIYKQSTAAIKFDTTGPIFNINNGVKQGDP
FT                 LSPKLFTSVLEEVFRNLAAGWEDKGIVVGERRLTXLRFADDIVLFSSSASE
FT                 LQTMLKDLSKASLEVGLKMNMAKTKLMTNSIQQKVTVGSEEMQYVQEYIYL
FT                 GQIVSFQCRQDKEVERRIQNAWRSYWSMGDLMKGDLPLRHKRRLMDMCILP
FT                 VLTYGAQTWSLTNSQKSALKVCQRAMERSILGVKLMDKIRNTQLRSRTKIA
FT                 DVGMKAAMLKWDWAGHVCRMPEESWAKSSTRWIPSSKRRIGRPKRRWRDEL
FT                 DHYXPDWCSIAXNRPEWKKWREAFAQQWDGAG"
XX
SQ   Sequence 1145 BP; 366 A; 247 C; 263 G; 263 T; 6 other;
     cgaccgacca tcttcacact gtcaatcaaa ttattgaaaa acattacgaa ttcaaccgtc        60
     cattatatat ggcattcgtt gattttacca aagcatttga cagcatttct catacttcca       120
     tatttcaagc wctrcaaaat caaaacatcg aaccatttta tatcaattta ctacgccata       180
     tttataaaca gagcacagca gcaataaaat ttgacaccac aggtccgata tttaatataa       240
     ataatggtgt gaagcagggc gacccgctat ctccgaaatt gttcaccagt gtcctagagg       300
     aagtattccg gaatctagcg gccggctggg aggataaggg aattgtcgtt ggtgagagaa       360
     ggttaacaaa bcttcgattt gctgatgaca tcgtcttgtt ctcgtcatcc gcgtcagagt       420
     tgcaaactat gcttaaagac ctaagcaaag ccagccttga ggttggacta aaaatgaata       480
     tggcaaagac caagctgatg accaacagca tacagcaaaa ggtgaccgta ggttcagagg       540
     agatgcaata tgtccaagaa tatatctacc tgggtcaaat agtatccttt cagtgccgac       600
     aagacaaaga agtcgaaaga cgaatacaaa atgcctggag gagctattgg tctatgggtg       660
     atcttatgaa aggagacctt cctctgcgac ataaaagacg actgatggac atgtgcatcc       720
     tcccagtact cacctatggt gcccagactt ggtctttgac gaactcacag aagtccgccc       780
     tcaaggtttg ccaacgtgcg atggagcgca gtattttagg tgtcaaatta atggataaaa       840
     tccgaaacac ccaactgcgc tctcgcacaa aaatcgctga cgtgggcatg aaagccgcta       900
     tgctgaaatg ggactgggcc ggacacgtct gccgcatgcc tgaagagtct tgggcgaaat       960
     cttctaccag rtggattcca agctctaaaa ggagaattgg cagaccaaaa cggagatggc      1020
     gggacgagct ggaccattat argcctgact ggtgctcaat agcgckaaat agaccagaat      1080
     ggaagaagtg gagagaggcc tttgcccaac aatgggatgg tgcaggctag ggaaaaaaaa      1140
     aaaaa                                                                  1145
//
ID   RTE-15_LMi  repbase;    DNA;    INV; 1543 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1543
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3476-3476 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(190..675,668..844,805..1233)
FT                 /product="RTE-15_LMi_1p"
FT                 /translation="GYVIKYMTVVNDLRTFDKVMIPLPKKKKQGTKKCSEH
FT                 RTISLISHAAKVMLGIINKRLKKVMEENVGEEQFGFRWNTGTRDAIGLPRI
FT                 LEERFIEKGRDLYMCFIDLEKAFDSVAXDXLATILREKRVDWKTRRLINSL
FT                 YLXQKASVKVRGESTNWIGLGKEERSKARMLSIPTLFNLYLENMIDQCSLD
FT                 DKGVEIGGRVGCLRFADDMVLLATGEKNYRSHGPSSHRGKELQELVDTIEA
FT                 NGKNYGMKINTKKTKVLAVGENKEIKIMLNGEILEQVQNFKYLGSRIDTDW
FT                 KCSTEIKTRIAMAKEAFYKKRRIFCSSLDRELRKRLIKCFVWSVLLYGAET
FT                 WTLRKKGWRLLRCGHGGGWKE"
XX
SQ   Sequence 1543 BP; 611 A; 193 C; 402 G; 332 T; 5 other;
     acatgacaca gatcgcaaac cagaaactcg ttgaaaactg taaatgatca cgaggaagga        60
     ccaaccataa tmatggaaga gtaaagtctg ccatagctgc aatgaaaaat ggcaaagcag       120
     taggtacaga tacgataccg ggagaaatat taaaatgctt gaaccaagat ggaataagag       180
     aaatattgag gttatgtaat aaaatatatg acagtggtga atgacctgag gactttcgac       240
     aaagtaatga ttccattacc gaaaaaaaag aaacaaggaa ctaagaaatg cagtgagcac       300
     aggacaatta gcctcatttc acatgcagcc aaagtgatgt taggaataat taataagagg       360
     cttaaaaaag taatggagga gaatgttggc gaggagcagt ttggctttag atggaatacg       420
     ggcaccaggg atgcaatagg gctcccacgg atcttggaag aaaggttcat tgaaaaagga       480
     agagacctct atatgtgctt catcgatcta gaaaaggcat ttgacagtgt cgcttkggac       540
     aakctggcga ctatattgag ggaaaagaga gtggactgga aaaccagaag acttataaac       600
     tcattatatc tkawtcaaaa agcctcagtt aaagtgagag gagaaagtac aaactggatc       660
     ggactaggaa aggagtaagg caaggatgtt gtcaatccct actcttttca acctctactt       720
     agaaaatatg attgaccaat gctcattaga tgacaaagga gtagaaattg gaggaagagt       780
     agggtgtttg agatttgctg atgacatggt ccttctagcc acaggggaaa agaattacag       840
     gagttagtgg acaccattga agctaacgga aaaaattatg gaatgaaaat taacacaaag       900
     aaaacaaaag ttttggcagt aggagaaaat aaagaaataa aaattatgct gaatggagaa       960
     atattagaac aggtgcaaaa ttttaagtat cttggaagca ggatagacac cgactggaag      1020
     tgcagtacag aaattaaaac aaggatagca atggcaaaag aggcatttta taagaaaagg      1080
     agaattttct gcagcagtct ggacagagaa ctgaggaaaa gactcataaa atgttttgta      1140
     tggagtgttc ttctgtatgg tgctgaaaca tggactttga ggaagaaagg ctggaggctt      1200
     ttgagatgtg gacatggcgg aggatggaaa gaataagttg gatggacaga gtaaaaaatg      1260
     aagaggtact gagaagagtg ggagagaaaa gacagttact agatgtaata aaaagaagaa      1320
     aaagaaattg gattgggcat atattaagaa agaatgacgg actgataaaa cagttttaga      1380
     aggttatgta gaagggaaaa ggaagcgagg aaggaggaga tttcagatac tggatgattt      1440
     gatggaaggt acaacataca gcagccttaa gaaggaagca atggatcgca gaaaatggag      1500
     aggcaaagga cctgctaata tagcagaaaa cggatgatga tga                        1543
//
ID   RTE-15_PPo  repbase;    DNA;    INV; 1100 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-15_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1100
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3166-3166 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1073
FT                 /product="RTE-15_PPo_1p"
FT                 /translation="AFDCVRWDCLWKILREMGVPEHLVILIAALYEXGTSM
FT                 VRVHDVMSAAFKPQKGVRQGCILSPLLFNIYGEYIMRKALEEWDGGISVGG
FT                 NKISNLRYADDTTLFASSEQEMAELLGRVDSASEMVGLSINKKKTKVMVVD
FT                 RPGLVKRTGELSDLEFVNEFVYLGSLVNNQGSCDGEIRRRTQMAKAAMSKL
FT                 TRIWQNRKVSNTTKTRLVRALVFSIFLYGTESWSIRAADRKKIDAFEMWCW
FT                 RRMLRIPWTAKRTNKSILEQLKISTRLSTICYRRVLGYFGHIARRQPDNLD
FT                 KLVVVGKIEGKRSRGRSPTRWTDQVQSILGLNIPTALRRAEDRAAWRQLVD
FT                 ETVKAYQGKHDLQQ"
XX
SQ   Sequence 1100 BP; 338 A; 228 C; 297 G; 235 T; 2 other;
     aagcattcga ctgcgtgagg tgggattgtt tgtggaaaat ccttagagaa atgggcgttc        60
     cggaacacct agttattctg atcgcagccc tatatgagam tggcacgtca atggtcaggg       120
     tacacgatgt gatgtcagca gctttcaagc ctcaaaaagg wgtccggcag ggatgcatcc       180
     tatctcctct tctcttcaac atctatggcg aatacatcat gaggaaagcg ctagaagagt       240
     gggatggagg tatctccgtt ggtggcaaca aaatcagcaa tcttcgatat gcagatgaca       300
     caacgttgtt tgcatcctca gaacaagaaa tggctgaact gctcggaaga gttgactctg       360
     caagcgaaat ggtgggccta tcgataaata agaagaaaac caaagtcatg gtggtggacc       420
     gtccgggact cgttaagagg actggagaac tctcagacct ggagttcgta aacgaattcg       480
     tgtacctagg ttcgttggta aataatcagg gaagctgtga cggagaaatt cgcagacgta       540
     cacagatggc caaagcagca atgagtaagc taactagaat atggcaaaac aggaaagtgt       600
     caaataccac caagaccaga ctcgtgcgtg ctttggtctt ctcgatattt ttgtacggga       660
     ccgaatcgtg gtcaattcgt gcagccgacc gaaagaaaat tgatgccttc gaaatgtggt       720
     gttggaggcg aatgttgcgt ataccgtgga ctgcaaaaag aacgaacaag tcaattctcg       780
     aacaattaaa aatatctacc aggctatcca caatatgcta ccgacgagtt ctgggatact       840
     ttggacatat tgctcgaaga caaccggaca atctggacaa actggtagtg gttggaaaaa       900
     tcgagggcaa aaggtcacga gggcgttcac ctacccgatg gaccgatcag gtgcagtcca       960
     tactgggact caacatcccg actgccctga gacgagccga agacagggcg gcgtggaggc      1020
     agctggtaga tgaaacggta aaggcttacc agggcaagca cgaccttcag caatgaagat      1080
     acgaagaaga agaagaagaa                                                  1100
//
ID   RTE-15_PXu  repbase;    DNA;    INV; 197 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-15_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-197
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3094-3094 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 197 BP; 43 A; 43 C; 75 G; 36 T; 0 other;
     aaagtcctag agtggcggcc gcggacgggt cgacgcagcg taggtaggcc tcccgcacga        60
     tggaccgatg acctggtcaa ggttgcggga gtgcactgga tgcgggcggc acaggaccgg       120
     gcattgtggc aatcgatggg ggaggcctac gtccagcagt ggacaaattt aggctgatta       180
     tgatgatgat gatgatg                                                      197
//
ID   RTE-16_Hmel repbase;    DNA;    INV; 4083 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-16_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4083
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           963..3974
FT                 /product="RTE-16_Hmel_1p"
FT                 /translation="QLPPSSETEKTQQTTLATIPYLPIRLVTVEDQDQNPL
FT                 KKKCHTSSEIHKNTSTSILKIPTYETKVKIYIITYNVRTLSTHERLIELNE
FT                 AIQEIKYDIIGLCEIRRKGTRIEEHKNFILCYTGLIPGRNGVGFIINKTRK
FT                 DWIESFTSINDRVALLNLNIHGLAMSLIQVYAPTEAASEDEINSFYSNVHK
FT                 AITQAYKNYFILGDFNAKIGQPRKDERLIMKPYGYGKRNDRGQRLIELALE
FT                 HKLAILNTFFPKKPNQRWTWRSPNGEYKNEIDYILSNTPNLCQNIEVLNLN
FT                 YPSDHRPIRATMIXTKQKKKRTGYKNKGTLSLKTELEISNYKQGLLSQLQN
FT                 ITICQGKTSVQEYYNKLTNAITQSLRDAQMPKEISKGTHRVLTKRTLALIR
FT                 SRQELQHVKTKTRAQKNKLSALYKLTSKYIKHDYKTYRSMTYEKHLKQAGS
FT                 SKKALKELKTYKLWIDSLNRKDRIVXNRKEIIGVATDFYKALYSDKDKGST
FT                 DHNYANFTNIKESGNITPISENEILQEIKRLKTEXSTGPDRISNEVIKTAN
FT                 AILIPPLIYLFNQILETAEIPSQWLESEIILIYKKGDPKDITNYRPISLLS
FT                 CIYKLFSSIINKRISVTLESKQPIEQAGFRKRFSTIDHIHALELIIEKYKE
FT                 KQRALYIAYVDYKKAFDTVSHSSIWIALQAQDVEPEYIKVIKNIYKRSTAK
FT                 IKLEDTGPSFPIKRGVKQGDPLSPKIFISILESIINKLNWDKIGLNINGKY
FT                 LSHLRFADDIVLLSESHVQLQTMLNSLNAASKEVGLEMNLSKTMVMTNSTN
FT                 IKISIDXEILKYTNKYIYLGKQIGFDNKQNEQEVERRVQNTWNKYWSLREI
FT                 FKSNMPISIKTKVWTSCLLPSLTYACQTWKYTTKVKNKITSCQRGIERSML
FT                 KIKKLQKIRHTKIRKITKAKDALSFAKKLKWKWAGHVARQMDERWTGRVTK
FT                 WKGPQGRRLRGRPYTRWEDEVVKIAGPCWPEIAQDREKWTSLEEAFTFI"
XX
SQ   Sequence 4083 BP; 1714 A; 798 C; 681 G; 882 T; 8 other;
     aaattaacgc catctattga cagaaccaca aatcagcgat cgatacagtt gccggtcact        60
     tacggcgaac ttcagcacaa ctcactagag ggcacctaca gttctaaaat atagctagac       120
     acgatatctc atctatcatg gaagaggtaa tgattgctct gcgtaaaatt cagagcgaac       180
     tcgacgcaca aaaaaacacc atcttaaaaa gcagcgaaaa agtaacagaa acagtaacac       240
     agaatataaa tagcatttta gaagaaaaat ttaaaatttg ggatgaaaag tatgataacc       300
     ttaaagaaat gttaaaaaat caagaaaaac gaatttattt catagaaaaa caggctagaa       360
     aaaataacat cgtcttcttc ggcatcgatg aaaccgaaaa ttcataccaa atgctggaaa       420
     atatcataat agaatttgta aataaatatt tttctctaga tctaaaccag agagatttac       480
     aagaagtgaa gagaatcggt aataaaggag aaaggtctag accaataatc gctacattta       540
     ctacacttgg aacaaaaatt aaaatactca aacagagaag agaggcacta agggaaacaa       600
     cattctatat aacggaggac tacccgaagc aaatactaca gaagagaaaa gagctacaag       660
     agcaggctaa actcgagaga gagaaaggca atatagtaaa aattaaatat gataaacttg       720
     tgttaatacc taaaaacaaa tctacgggta aaaataaaag aatactgtca atatctcctg       780
     aaacacctac ctacgatgtt actaaagtac aggctagcaa gaaaaaccga caacacacac       840
     aaataagacg aacctctagt ctatctgaag gaattgtgaa accaagtatg cttaacttct       900
     tagtaagtaa aaatacaaac aacacgccaa gcgttgagtg caaaacagcc gacaaatact       960
     agcaattacc gccctcctca gaaacagaaa aaacgcaaca aacaacttta gcaactatac      1020
     cttatcttcc aatccggctg gtcaccgtgg aggatcaaga ccaaaaccct ctaaagaaga      1080
     aatgccayac atcctcagaa atacataaaa atacttcaac atcaatatta aaaatcccta      1140
     catatgaaac aaaagttaag atatatataa taacctataa cgtaagaact ttatctactc      1200
     acgaacgatt aattgaacta aatgaagcaa tacaagaaat taaatacgac ataattggct      1260
     tgtgcgaaat aaggcgcaaa ggcactagaa ttgaagaaca taaaaatttc atactatgct      1320
     acaccggact aataccaggt agaaatggag tcggctttat aataaataaa actcgcaaag      1380
     attggattga aagcttcact agcattaacg atagagtcgc attactaaac ttgaatattc      1440
     acggattggc catgtcactt atacaagtat atgcaccgac tgaagcagca agcgaggacg      1500
     agataaactc tttctactca aatgtccaca aagctattac ccaagcytat aaaaattatt      1560
     tyatactagg ggattttaat gcaaaaatag gacaacctag gaaagacgaa cgtttgataa      1620
     tgaagcccta cggctacggc aaaagaaacg acagaggcca gagacttatc gaactcgccc      1680
     tcgaacacaa rctagcaatc ctaaatacct tctttcccaa aaagcccaac caaagatgga      1740
     cctggcgctc accaaatgga gaatacaaaa acgaaataga ctatatatta tcaaatacac      1800
     ccaacttatg ccaaaatatt gaagtcctaa acctaaacta cccgtcagat cacagaccaa      1860
     tcagagcaac catgatcayc acaaaacaaa agaagaaacg cacaggatat aaaaacaagg      1920
     gaactttatc actgaaaaca gagttagaaa tatctaacta caaacaaggc cttttgtccc      1980
     agctacaaaa tataactatt tgccaaggaa aaacatcagt acaagaatat tataacaaac      2040
     taacaaatgc tataactcag agcttacgcg acgcacaaat gcccaaagaa atatcaaaag      2100
     gtacacatag agtcttaaca aaacgtacgc tggcactcat cagaagtaga caggagcttc      2160
     agcatgttaa gacaaaaact cgagcccaaa aaaataaact atcagcacta tacaaactaa      2220
     caagtaagta cataaaacac gactataaaa cttacagatc gatgacttac gaaaaacacc      2280
     tgaaacaagc gggaagctca aaaaaggctc ttaaagaatt aaaaacatac aagctgtgga      2340
     tagacagctt aaatcggaag gacaggatag taaahaatcg caaggaaatt ataggggtag      2400
     ctacagattt ctacaaagcc ctatatagcg acaaagacaa agggagcact gaccataact      2460
     atgctaactt tacaaatatt aaagagagcg gaaatataac accaatatcg gaaaacgaaa      2520
     ttttacaaga gataaaaaga ctaaagacag aahaaagcac aggacccgac agaatttcca      2580
     atgaagtcat taaaacagcg aacgcgatac taattccacc cttaatatat ttattcaacc      2640
     aaattttaga aactgctgaa ataccatcac aatggctaga atcggaaatt attcttatct      2700
     ataaaaaagg agacccgaaa gatattacta actacagacc aataagttta ctttcgtgta      2760
     tctacaaatt gttctcttcc atcataaaca aaagaataag cgtcacatta gaatcaaaac      2820
     aaccaatcga gcaggcaggc tttcgcaaga gattttcaac catcgatcat atacatgcac      2880
     tagaattaat aatagaaaaa tacaaggaaa agcaaagagc gctctacatc gcgtacgtag      2940
     attataaaaa agctttcgac accgtgtccc actccagtat ttggatcgct ttacaagctc      3000
     aagacgtgga accagaatat ataaaagtaa taaaaaatat ttacaaaaga agcacagcca      3060
     aaataaagct agaagataca ggcccttcat ttcccatcaa aagaggagtg aaacaaggag      3120
     acccgctgtc cccaaaaata tttatatcaa tcctggagtc aataattaac aaacttaact      3180
     gggacaaaat aggtcttaac ataaacggca aatacttaag tcatctgcgc ttcgcagacg      3240
     acatagtact actttcagaa tcacacgtac agttacaaac catgcttaat tcattaaacg      3300
     cagccagcaa agaggtagga ctggagatga acctctcaaa aacaatggtc atgacaaaca      3360
     gcacaaatat aaaaatatca atagacdatg aaattctgaa atacacaaat aaatacatct      3420
     accttgggaa acaaatcgga ttcgataata aacaaaatga acaagaggtt gaacgaagag      3480
     tgcaaaatac ctggaataag tactggtcct taagagaaat atttaaaagt aacatgccaa      3540
     taagtatcaa aacaaaagta tggacttcat gcctcctacc gagccttacc tacgcgtgtc      3600
     aaacttggaa atatactacg aaagtaaaaa acaaaataac cagttgccaa cgcggaatag      3660
     aacgaagcat gctaaaaatc aaaaagctcc aaaaaattcg ccacactaaa attagaaaaa      3720
     tcaccaaagc taaagatgct ttaagctttg cgaaaaaact aaagtggaag tgggcagggc      3780
     acgtagcgag gcaaatggac gagaggtgga ccggcagggt aaccaaatgg aagggcccac      3840
     agggcaggcg cctcagaggc agaccttata cgagatggga agacgaagta gtcaaaatcg      3900
     ctggcccctg ctggccggaa atagctcaag acagagagaa atggacttct ttagaggagg      3960
     ccttcacctt catctgagga ggggttcttg catttagcat atgtattttc ttaatattaa      4020
     tcttaatcaa actgtaataa tatgcaagaa ataaaaggct ttttattttt ttttttttta      4080
     ttt                                                                    4083
//
ID   RTE-16_LMi  repbase;    DNA;    INV; 3205 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3205
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3477-3477 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(367..1014,1104..1283,1325..2095,2099..2398,
FT                 2386..3186)
FT                 /product="RTE-16_LMi_1p"
FT                 /translation="IGTWNVQTLLQSGKLENLKVEMEMMNLDILGISEMRW
FT                 PDNGDFWSGDYRVIDTGTIADRPGEGGVGIILRKEMGCCVMGYVQFSGRII
FT                 LVKLKTKPKNTVIVQVYMPASSHEDEEVEEVYGDLNQIICGTKGDENLIIM
FT                 GDWNSVVGEGKEGSVVGCYGLGERNNRRTTDRILRRNNLIVQNYSSTILAD
FT                 DILGNHLETRRYQINYILVKEDLRTKETKSSRWNVENLNVSCSAKFSNRTK
FT                 ISPVTNTAGTIQDRWDSIKEKITTAAEEIVGKYETEKKEFKNSNTPEGQQQ
FT                 YKKLRNEVNRQAKEEKEQYLEKICKEVEDLFSSGKLEAAYKTVNTFFGTQK
FT                 IKCNGIVTDDGKLAYEDHELVQVWKKYLDRLYETDRSLTDHDVLENESEVD
FT                 MDELGDSILRDEFDHALNKMKDKKAPGIDDLPSELLKATSYEMKDALFTLV
FT                 CEIYETGTLPADFNKCIIIPLPKKSSAKKCEHYRTLSIISHASKILTIILN
FT                 RIECKIEALLTDDQFGFRRGRGTREAILALRLVLEKDGKVKTLIAFVDLEK
FT                 AFDNVKWDILFNILKESQVKYKDRRIIWKLYRDETAVIRCGEYVQEAKIEK
FT                 GVRQGCSLSPILFNAYIQIGLNEVREKMQNREGVWGRGVVIQGERTDMLRF
FT                 ADDIAVVADNEDELTSMLSEMKSTLSKYGMKINRSKTKILTVNKYGTHASI
FT                 MFDGAPLENVNEFTYLGSKITSDAKSKRDIQSRICQAKIAFNKKRKLLTSN
FT                 NMNILLRKKLLKTFVWSVMLYGSESWTMGKPEHRKIDAFEMWCYRRMLKIS
FT                 WVDKVTNEQVLQRIGEGLSLRRTLRKRRNIWIGHVLRHEGLLKIILEGLVE
FT                 GVNCRGRPRLEYMRQVMDDMNCNSYRDIKQMASNRTLWRNAANQPTG"
XX
SQ   Sequence 3205 BP; 1187 A; 465 C; 783 G; 770 T; 0 other;
     gtcccgggca tggcgttaaa ctgcgtccat aaaccgagtg accaccggta taagtggtcc        60
     cctctaccaa gtgccaacgg cctcattgga gggcggatga gcaggttgag gtctgggcac       120
     cctcttgtcc ttggggtggg aaactgcccc taaaggcgga tgagccacta attggccaac       180
     gacataggat gtggaaggca aggggaaacc accacattaa agatcctctt ggatatcccg       240
     agtatcagca ttttgaccat ggtggaaagt gcttcagtaa aattttccgg agttaaaata       300
     gcccctcaat cggatctccg ggcaggggct gctcaagcac gatcaacgaa taaattcaag       360
     aaatgaatag gaacatggaa tgttcaaaca ttacttcagt ctgggaaact agaaaatctg       420
     aaggtggaga tggaaatgat gaatttggat attcttggaa tctcagaaat gagatggcct       480
     gataatggag acttctggag tggtgattat agagtaattg atacaggcac aatcgcagat       540
     agaccaggtg agggaggagt ggggattata cttagaaaag agatgggatg ttgtgtgatg       600
     gggtatgtgc aatttagtgg taggattatt ttagtaaaat tgaaaaccaa accaaagaat       660
     acagtgattg ttcaagtata catgccagcg tcaagccatg aagatgagga agtagaagaa       720
     gtgtatggag atttaaatca gattatttgt ggtacaaaag gtgatgaaaa tttgataatt       780
     atgggtgatt ggaactcagt agttggtgaa ggaaaggaag gatcagtagt tggatgttac       840
     ggattaggag aaagaaataa caggagaacg actgatagaa ttctgcgtcg aaataatctg       900
     atagtacaaa attattccag caccatcctc gcagacgata tacttggaaa tcacctggag       960
     acgagaagat accaaataaa ttacatacta gtcaaagagg atttaagaac caagtgagaa      1020
     ctgtagaagc tatgcaagtc cagatgtgaa cagtgatcac aacatggtgc tagcagaatg      1080
     cctcttaaat tcaaaaaact taagagacta aaagctctcg atggaatgtt gaaaacttga      1140
     atgtcagctg ttctgcgaaa ttcagtaata gaacgaaaat atcaccagtg actaatactg      1200
     caggaacaat acaggatcga tgggattcaa taaaggagaa gattacaaca gcagcagagg      1260
     aaatcgtggg taaatatgag acgtaaagag aactggatta gccaagacct gctaaataag      1320
     ataggaaaaa aaggagttca aaaattcaaa cacgccagaa ggacagcaac aatacaagaa      1380
     attaagaaat gaagtaaata gacaagcaaa ggaagaaaaa gaacagtatt tggaaaaaat      1440
     atgcaaggaa gtagaggacc ttttcagcag cggtaaactg gaagcagcgt ataaaactgt      1500
     caatacattt tttgggacgc aaaagattaa atgcaatggt attgtgacgg atgatggaaa      1560
     gttagcatat gaagatcatg aattggtgca agtgtggaag aaatatctcg atagacttta      1620
     tgaaacagat agatcactaa cagatcatga tgtccttgaa aacgaatcgg aagtagatat      1680
     ggacgaactt ggagacagta tattgagaga tgaatttgat catgcgctaa ataaaatgaa      1740
     agataaaaaa gcaccaggaa ttgatgactt gccttcagaa ttacttaaag caacctcata      1800
     tgagatgaaa gatgcattgt ttacattggt atgtgaaata tatgaaacag gaactttacc      1860
     tgcagatttc aacaaatgta tcatcatacc attgcctaaa aagtcatcag ccaaaaaatg      1920
     tgaacattat cgtacactga gtatcatttc gcatgcttca aaaatattga caataatatt      1980
     gaatagaatt gaatgcaaaa tagaagcttt gcttactgat gatcagtttg gatttagaag      2040
     aggaagagga actcgcgaag caattttagc actgaggcta gttttggaaa aagattaagg      2100
     aaaggtcaag acactcatag cctttgtgga tttagaaaag gcgtttgata acgtgaaatg      2160
     ggatattctg tttaatattt tgaaagaatc acaggtgaaa tataaagata gaagaataat      2220
     ttggaaatta tatagagatg aaacagctgt aattaggtgt ggagagtatg tacaggaagc      2280
     aaaaatagaa aagggagtaa gacaaggatg ctcactttca cctattttat tcaatgcata      2340
     tattcaaata ggattgaatg aagttagaga aaagatgcag aatagggaag gggtgtggtg      2400
     atacaaggag aaagaactga catgcttcga tttgccgacg atattgcagt ggtagcggac      2460
     aatgaagatg agttaacgtc tatgctcagt gaaatgaaat caacgcttag caagtatgga      2520
     atgaagatca acagaagcaa aactaaaatt ttaactgtaa acaagtacgg aacccatgca      2580
     agtattatgt tcgatggtgc accccttgag aacgtcaatg aatttacata cctgggtagc      2640
     aagatcactt cagatgctaa atctaaacga gacattcaaa gtagaatatg tcaagcaaaa      2700
     attgccttca ataagaaacg taaacttctc acatccaaca acatgaacat ccttttgagg      2760
     aagaagttgt tgaagacttt tgtatggagt gtaatgttgt atggaagtga atcttggacc      2820
     atgggaaaac cggaacatcg aaagatagac gcgttcgaga tgtggtgtta ccgtagaatg      2880
     ttgaagataa gctgggttga taaagtaaca aacgaacagg ttttgcaaag aattggtgag      2940
     gggttgtctc tgagaagaac tctgcgaaaa aggcgcaata tctggattgg tcatgtcttg      3000
     aggcatgaag gattgctaaa aatcatcttg gagggattgg tggagggagt gaactgtaga      3060
     ggaagaccca ggctggagta tatgagacaa gtgatggacg atatgaactg taatagctac      3120
     agggacatta aacaaatggc aagcaacagg acactatgga gaaatgctgc aaaccaacct      3180
     acgggttgat aaccaaagaa gaaga                                            3205
//
ID   RTE-16_PPo  repbase;    DNA;    INV; 269 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-16_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-269
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3167-3167 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..244
FT                 /product="RTE-16_PPo_1p"
FT                 /translation="IKLTRLKWAGHVQRMDEVRMPKSLMASNPEGRRDRGR
FT                 PKLRWVDGVNRDAKNVGIINWKSVATNRPKWKKLLDQAKAHKGL"
XX
SQ   Sequence 269 BP; 97 A; 49 C; 78 G; 45 T; 0 other;
     tataaagcta accaggctca aatgggctgg tcacgtgcag aggatggacg aagtcaggat        60
     gccaaaatcc cttatggcga gcaaccctga aggtcgtcga gatcgaggaa gaccaaagtt       120
     gagatgggta gacggtgtaa atcgtgacgc aaagaatgtt ggcataataa actggaaatc       180
     ggtagccact aatagaccga agtggaaaaa attgcttgac caagccaagg cccacaaagg       240
     gctgtagagc taaggaagaa gaagaagaa                                         269
//
ID   RTE-17B_PPo repbase;    DNA;    INV; 240 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-17_PPo;
KW   RTE-17B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-240
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3168-3168 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~86% identical to consensus. 5'-truncated.
XX
SQ   Sequence 240 BP; 102 A; 28 C; 44 G; 66 T; 0 other;
     aaaacagcgc atcctggccg ggcgcaggaa ggaagtggag tcttggggag gcctttaccc        60
     aacaggggtc ctacagaata aaaaaaaata aaaaaataaa aaaacaaaaa aaaaaaataa       120
     aaaaaaatat ttttagagaa gtgttaatta ttttatgttc acaattgtaa acagtgcgta       180
     taagtacatt gtttttatac tttatgtaat ctgtaaggaa ataaatggct ttattattat       240
//
ID   RTE-17_Hmel repbase;    DNA;    INV; 691 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-17_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-691
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..649
FT                 /product="RTE-17_Hmel_1p"
FT                 /translation="SHDLKLVTKXAVYRATVVSSLLYASETWPLYRKHITT
FT                 LXRFHLKCXRDIMNIRWWDRVRNTEVLQRAKXDGMEAFLMRRQLRWAGHIS
FT                 RXXELRMTKRVFXSELQVGKRKHGGQLLRYKDVLKRXXKSCXXXXXXWXTI
FT                 XADRXXWRRILSTKVSEFEIKRRHELNLRRDELKARVPEAIDYNYLGGVLT
FT                 CSECGRTFSGKVGYVSHIRAHQRSSC"
XX
SQ   Sequence 691 BP; 181 A; 137 C; 169 G; 174 T; 30 other;
     ctcgcatgac ttaaagctcg ttacaaaawt agctgtatac agggcaactg tagtttcgtc        60
     tctcttatat gcctctgaaa catggccsct ctatcgcaag catattacta cacttgawcg       120
     mttccatctc aagtgttwac gygatattat gaatatccgt tggtgggacc gtgttcgtaa       180
     tacagaagtt ctacaacgtg cgaagatbga cggaatggaa gccttcttga tgcgaagaca       240
     gttgcgttgg gccggtcata tctcccggat rhcggaacta agaatgacaa aacgcgtctt       300
     twwttccgaa ctgcaggtag gcaagcggaa acatggcggc caattattgc gatacaagga       360
     tgtgctsaag cgcyatrtsa aragttgcgr catsraycya yycsmatggg avacaattgm       420
     agctgaycgg cytmaatgga gacgcatcct tagcactaag gtgtcggagt ttgaaataaa       480
     acgacgacat gagctcaatc ttagacgcga cgagcttaag gcccgggtac ctgaggctat       540
     tgattataat tatttggggg gtgtgctgac atgtagtgaa tgtggccgaa ctttttctgg       600
     taaagtcggt tatgtcagtc acattagagc tcatcaacga agctcttgtt agccagatgt       660
     cagtcgctgt ggccgaaatc ggtcaggaac t                                      691
//
ID   RTE-17_LMi  repbase;    DNA;    INV; 3200 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3200
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3478-3478 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(198..941,990..1130,1120..1341,1314..1787,
FT                 1744..3189)
FT                 /product="RTE-17_LMi_1p"
FT                 /translation="MVMGPFEVKYSGGKLGSHSDLRAEPTSKRFRPKGTFR
FT                 LGTWNVKSLNRPGTFQTLLDELTRYDVDITAIQETRWQGEGSIKRSNYTFF
FT                 YGGADAHSFGTGFAVQRKVLPAIRDIRFISDRLSAIVLSGRWNRLVVINVH
FT                 APTEDTEDVVKDGFYEELDQLWDDTKLITGDFNAKVGKEEVFRPTTGKESL
FT                 HNISNDNGTRVVNFAVSKDMIVESTYFKRKDIHKATWVSPDGHTRNQIACS
FT                 CGSEMAHSFSRSYESSPTATTATSRCHNTGLIRFDTDKLNDENFRRRYMIE
FT                 IFKKFSNKFDALSTHENQDEDVNKQWITVRNNIKEAARATIGTIKKNRRKP
FT                 WFDEECKKLVEERRKFEWETVNERSSMGDSKREEFLNMRREIGRRLRAKKR
FT                 DYLNNQIKEMETNSKTKNIRELYLDINGYRKGFQAGTNALRGDGGGILTDP
FT                 SAILSKWKVYFEELLNVHQEAGNEQAFEIHTAEPQILEPTLKEVRDAINKL
FT                 KNHKAPGADCITAELLKWGTEIGRSNSQSNNNGGQKLAEVIHKVITKVWNS
FT                 EMIPKEWQESILIPIFKKGDKMVCGNYRGISLLPVCFKIFSNILLSRLTPY
FT                 ADEIVGDYQAGFRRNRSTIDQIFTLRQILEKKWEYNKPVHNLFIDFTKAYD
FT                 SVLRTKLYRILLELGIPKKYVRLIEASLKNTKGRVRVGKLESEEFEIKNGL
FT                 KQGDALSPLLFNLVLEYIVRMAADNSEGVELNGNIKILGYADDLNIISDRK
FT                 ESVTANANALIKASEDVGLRISEDKTKYLVTTRMPTAIDQEMLRVGHMQFE
FT                 KVNAFKYLGVEITSRNEIESELRKRLRAGNACYFSLNRLLSSRLLSRNLKI
FT                 RIYKTIILPVVLYGCETWSLTLQNEKPFRAFENKILRKIFGAKRDDISGEW
FT                 RKLHNEEVHELYSSPNIISVIKSRRLRWAGHVARMDEGRAARRVLVGHLEG
FT                 KRPVGRPRRRWEDNVKADLRSLGIEGDWKEIAQDRDRWRKHVAAVMDFQVR
FT                 YDQ"
XX
SQ   Sequence 3200 BP; 1099 A; 508 C; 821 G; 772 T; 0 other;
     gtgggcccct accaccacgg cacagcgcgt ccccagtttg tggatagggg atacggcctt        60
     cagatatgaa gggtagctgc gaatacaaaa ataagcagtc gcggacagcc ggtggggagc       120
     aggtgatggc gtgatgaact atccctgttt cttcttctct tactatcaaa tctatccatc       180
     aagaatcagc aacattaatg gtcatgggtc cctttgaggt aaaatattcc ggaggtaaac       240
     taggttccca ttcggatctc cgggcggaac ctacttcgaa gagattcagg ccgaaaggaa       300
     ctttcaggtt gggaacatgg aacgttaaaa gtttgaacag gccaggaacg ttccaaacat       360
     tattagacga attaactaga tacgatgtag acattacagc tattcaagaa actcggtggc       420
     agggggaagg tagcataaag aggagtaact atacattttt ctatggaggt gcggatgctc       480
     acagttttgg aacaggtttt gcagtacaga gaaaagtgct tcccgcaatc agagatataa       540
     ggtttattag tgacaggcta tcagctatag tgttgtccgg caggtggaat agattagtag       600
     taattaatgt acacgcaccg actgaggaca ctgaagacgt tgttaaagac ggcttttatg       660
     aagaactaga tcaactgtgg gatgatacga aattaatcac aggtgatttt aatgcgaagg       720
     tagggaagga ggaagtattc cggcctacaa ctgggaaaga aagtttgcat aacatttcga       780
     atgataatgg cacaagggtg gttaattttg ctgtttccaa agacatgatt gttgagagca       840
     catatttcaa aaggaaagac attcataaag caacttgggt ctccccggat ggacacaccc       900
     gaaaccaaat tgcatgttct tgtggatcgg agatggcaca ctagtataga aaatgttagg       960
     actttcaggg gagcagattg cgattctgat cattttctcg tagttacgaa agttcaccaa      1020
     cggctacaac agcaacatct agatgtcaca atacaggact cattagattc gacactgaca      1080
     agctaaatga tgaaaacttt agaaggaggt acatgataga aattttcaaa taagtttgat      1140
     gctctcagca cacacgaaaa tcaggacgag gatgtaaaca aacagtggat cactgttagg      1200
     aataatatca aagaggcagc gagggctaca ataggtacaa ttaagaagaa taggaggaaa      1260
     ccgtggtttg atgaggaatg caagaaattg gtggaggaaa ggagaaaatt tgaatgggag      1320
     acagtaaacg agaggagttc ttgaacatga gaagggaaat tggtcgtagg ttacgggcaa      1380
     agaagaggga ttatttgaac aatcaaatta aagaaatgga aactaacagt aaaacaaaaa      1440
     atattaggga actctaccta gacataaatg ggtacaggaa ggggttccag gctgggacaa      1500
     atgctcttcg aggggatggc gggggcatac tgacagaccc aagtgctata ttaagtaaat      1560
     ggaaggtgta ttttgaggaa ctgttaaatg ttcaccagga agcaggaaat gagcaggcgt      1620
     tcgaaataca tacagcagaa ccgcagatac ttgagccaac gctaaaggaa gtaagagatg      1680
     caatcaacaa attgaaaaac cataaagcac cgggagcaga ttgcataact gcagaattat      1740
     taaaatgggg gacagaaatt ggcagaagta attcacaaag taataactaa agtatggaac      1800
     tcagagatga tacctaaaga gtggcaggag tcaattctga tcccaatttt taagaagggc      1860
     gacaaaatgg tatgtggtaa ttatagaggg atatcgctat taccagtatg tttcaaaatt      1920
     ttctcgaata ttctgctaag caggcttaca ccatatgcag atgaaattgt gggggattac      1980
     caagctggct ttcggaggaa cagatctact atagaccaaa tattcaccct gcgtcaaatt      2040
     ttggagaaga aatgggaata taataaaccg gttcataatc ttttcataga ttttacaaaa      2100
     gcatatgatt cagtattgcg aacaaaattg tacagaattc ttttggaact tggaatacca      2160
     aagaagtatg ttaggcttat agaagcgagt ttgaaaaaca caaaaggtag agtacgcgtg      2220
     gggaaattgg agtcagaaga attcgaaata aagaacggac ttaagcaggg agatgccctg      2280
     tccccgctac tttttaattt agtcctagaa tatattgtgc gaatggcagc agataattca      2340
     gagggtgtgg agttaaatgg aaatattaag atattagggt atgcagatga tctaaacatc      2400
     attagcgata ggaaagaatc tgtaacagca aatgcgaatg cgttaatcaa ggctagtgaa      2460
     gacgtaggtc tgaggataag tgaagacaaa acgaaatact tggttactac tagaatgcca      2520
     acagcaatag atcaggaaat gttaagagtt ggtcacatgc agtttgaaaa agtgaacgcg      2580
     tttaagtatt taggtgtgga gattacatcg agaaatgaga ttgaatccga gctgaggaag      2640
     agattacggg ctggaaatgc ttgctacttc tcactgaata gattactctc atcacggtta      2700
     ttgtctagaa atttaaagat cagaatatac aaaactatta ttcttccagt tgtgctgtat      2760
     gggtgtgaaa cttggtctct cactttgcaa aatgaaaaac cgtttcgagc atttgaaaac      2820
     aaaattttga ggaaaatttt cggagcaaaa agggatgaca ttagcgggga gtggcgaaaa      2880
     ctgcataacg aagaggttca cgaactctat tcaagcccta acataatcag tgttattaaa      2940
     tcacgtaggc tgcgatgggc gggtcacgta gctcgaatgg atgaaggcag ggcagcgcgc      3000
     agagtattgg tagggcactt agagggaaaa cgtcctgtgg ggagaccgag gcgtagatgg      3060
     gaggacaatg tgaaggccga tttgaggagc ctaggtattg aaggcgactg gaaggaaata      3120
     gcgcaagaca gggacagatg gcgaaaacat gttgctgcgg taatggactt tcaagtccgg      3180
     tatgaccagt gagtaagtaa                                                  3200
//
ID   RTE-17_PPo  repbase;    DNA;    INV; 371 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-17_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-371
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3169-3169 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..221
FT                 /product="RTE-17_PPo_1p"
FT                 /translation="QWAGHISRLTDNRWTLEATRWKGPAGKRKVGRPTKRW
FT                 SDDIMEVTRKDWLTPSKNREGWKEMEEAFTQGGIHI"
XX
SQ   Sequence 371 BP; 155 A; 46 C; 87 G; 83 T; 0 other;
     ggcaatgggc tggccatata tcacggttga cggataatag atggacttta gaagctacaa        60
     gatggaaagg gccagcggga aaaaggaaag tcggtagacc tacaaaacgg tggtctgatg       120
     atataatgga agtgacaagg aaagactggc tgactccaag caaaaacagg gaaggctgga       180
     aggagatgga ggaggccttt acccaaggag ggatccatat ttaaaataaa taaataaata       240
     aaaaaaataa tgtagtagac taacaatact aataactata ataaggtgtg aaactaacaa       300
     tactaacaaa atgaaatttt tgaaacgcta tgtaaatatg gaaataaaga ggcttattat       360
     tattattatt a                                                            371
//
ID   RTE-18B_PPo repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-18_PPo;
KW   RTE-18B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-213
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3170-3170 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated. ~83% identical to
CC   RTE-18_PPo.
XX
SQ   Sequence 213 BP; 76 A; 35 C; 54 G; 48 T; 0 other;
     aaaagagggg cggcagctaa gatgggagga cgactaaggt gacgccggcc caaattggag        60
     gagagttgcc cacgacagaa cccaatggaa atgtttagag gaggcctatg ccaagaggca       120
     cactgaaatt agagacatat tgtgaactta atccatactc aactatagtt aattgaataa       180
     tttcagaata aaggggctat attattatta tta                                    213
//
ID   RTE-18_Hmel repbase;    DNA;    INV; 2993 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-18_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2993
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..2969
FT                 /product="RTE-18_Hmel_1p"
FT                 /translation="TDTLPTTFGMKTRTRIAFWNVRTLGCESRLAQAEAEM
FT                 LRYNLQILGLSEVRRNGFGELRTSRSLTLLYSGKETEEEVHEYGVGLLLSE
FT                 SARKSLLDWKPISDRIMCARFNSRARKISIVQCYAPTNSASEETKDDFYNS
FT                 LNATVNNIKKQDIVIVMGDLNAKVGSCNLNRERCMGIQGLGVCNENGERFI
FT                 EFCQNYDLTIGGTLFIHRDHHKHTWTSPDGVTKNQIDHLAISTKWRSSLLD
FT                 VRNRRGADIDSDHHLIVAEVRLKVAVARPIRETEKFGKRYDISKLRDPTIR
FT                 DIFRLELRNRFFGLQTHEKTTDEEWNHIKVAYTEASSIVLGHKHRKRDEWI
FT                 SQSTWDLISSRKELHLKLLGAQNEAQRAHLKLEYRGMRRKIYRSTRKDRRL
FT                 WADGLAEQAQLAANSGNLRNLYTTTRTLAGNKSFKKKPLKSTEGQLIVTSE
FT                 GQLQRWREHFSEVFGSQELATPIERLEEIPPSRLLDIDTDPPTHEEVARAI
FT                 LSLKVQKAPGLDLITAEMLKADLPTAVEILKPLIDKIWDSEEVPEDWNKGL
FT                 LITVPKKGDLSQCSNWRGITLLSVPSKIFCKIILDRLSRAVEPLLRNEQAG
FT                 FRPNRSCIDQINTLRIILEQASEWQRELYLTFVDFEKAFDTLRWSSLWSRL
FT                 ITIGVPPKIVHLLQALYKSCSCKVLHDGLLSEDVTVHAGVRQGCLLSPLLF
FT                 LIALDDVMRNVCEKGRRGIEWGISDVLEDLDYADDICLLSHTRNDMQSKLE
FT                 DLKLEASKIGLKINIRKTQGMRSGVKNSTPLQIGTDIVEQVHNFTYLGSVV
FT                 SVAGGTEQDISSRIAKARATFTQLRPIWQSRKLTRRVKLRIFGSNIKSVLL
FT                 YGCETWKVTKAVSHQLQVCVNRCLRQILGIHWPELISNVNLRELCRESPID
FT                 QQIKRRKWNWIGHTLRRGPGHIPKQAMDWNPQGKRKRGRPKQTWRRSVLDE
FT                 AKKIGKTWNEIKREAQDRAKWRNSVDALCPNSGT"
XX
SQ   Sequence 2993 BP; 912 A; 701 C; 698 G; 680 T; 2 other;
     gaaccgatac tttaccgacg acctttggca tgaaaacccg gacacgaatt gctttttgga        60
     atgtacgcac acttggctgt gaaagtagac ttgctcaagc agaagcagaa atgcttagat       120
     acaacttgca aattcttggt ctaagtgaag tgcgaagaaa tggatttggt gaactgagaa       180
     cgtccagaag tctaactttg ctctattccg gcaaggagac ggaagaagaa gtgcatgaat       240
     atggcgtagg gctccttctt tcagaatcag caaggaaaag tcttctggac tggaaaccga       300
     tctcagatcg cattatgtgc gctcgattca actctagagc ccgaaagatc tccattgtac       360
     aatgctacgc cccaaccaat tccgcatcag aagaaaccaa agacgacttc tacaactctc       420
     tcaatgccac agtcaataac atcaagaaac aggatattgt gatcgtcatg ggagacctga       480
     acgcaaaggt tggaagttgt aatctgaatc gagagagatg catgggtata caggggcttg       540
     gagtgtgtaa cgagaacgga gaacgtttta tagagttctg tcaaaattat gatctcacta       600
     tcggtggtac gctattcata cacagagacc atcataagca cacttggact tcacccgatg       660
     gtgttacgaa gaaccaaatt gaccaccttg ctattagtac taaatggcgc tcgtcgttgc       720
     tcgatgtgcg taaccgtaga ggtgctgaca ttgatagcga ccatcatttg atagtcgcgg       780
     aagtacgcct taaagttgcg gtagcacgac caataaggga aacggaaaaa tttgggaaac       840
     gatatgatat atccaaacta cgagacccaa ctattcgtga catattcagg cttgagctcc       900
     gaaaccgatt ctttggactc cagacacatg aaaaaaccac ggacgaggag tggaatcaca       960
     tcaaggttgc ttatacagaa gctagctcga tcgtattagg acacaagcat cgtaagcgcg      1020
     acgaatggat ttcgcaaagt acctgggacc tcatttccag tagaaaggag ctgcatttaa      1080
     agctactagg cgcacaaaat gaagcccaaa gagctcacct caagctggaa taccgtggga      1140
     tgcgcagaaa aatctatcgc agtacgcgca aagatagaag actttgggca gacggtctcg      1200
     ctgaacaagc gcaactcgct gcaaattctg gaaatctgag gaacctgtat accacaacaa      1260
     gaactctggc gggaaacaaa agcttcaaga agaagcctct taagtccaca gaaggtcagc      1320
     ttattgttac atccgaaggg caactgcaac gctggcgtga gcatttttcg gaagtcttcg      1380
     gcagccagga gttggcaaca ccaatcgaaa gactagagga gatcccacct tcacggctac      1440
     tcgacatcga caccgatcca cctacacatg aagaagtcgc tagagctatt ctttccttga      1500
     aggtccaaaa agcaccagga ctcgacctta taactgcaga aatgctcaaa gctgacctgc      1560
     ccactgctgt tgagattctg aagcctttga tcgataagat ctgggattct gaagaggttc      1620
     ctgaggactg gaataagggc ctactcataa ctgtacctaa aaaaggtgac ctaagccaat      1680
     gcagcaactg gagaggaatt actctacttt cagttccgtc taagattttc tgcaagatca      1740
     tcttggatag actatcaaga gccgttgaac cactccttcg caacgaacag gcgggcttcc      1800
     gccccaaccg ttcgtgcata gatcaaatca acaccctccg catcatactc gaacaggcat      1860
     cagaatggca gagagaacta tacctaacct ttgtcgattt cgaaaaagcc tttgacacgt      1920
     tgagatggtc tagcttatgg tcccgcctga tcaccatcgg tgtcccgcca aaaatcgtac      1980
     atttactgca agccttatac aagagttgct cttgcaaagt tctgcacgat ggccttcttt      2040
     ccgaagatgt aaccgtgcat gccggtgtcc ggcaaggttg cctcctctca cctctcctct      2100
     tcttgattgc attggacgat gttatgcgca atgtgtgtga aaaggggcgc cgtggaatag      2160
     aatggggaat aagcgatgtc ttggaagacc tggactatgc tgatgacata tgcctactta      2220
     gccatactcg caacgatatg cagtcaaagc ttgaagatct gaagctagag gcatctaaaa      2280
     tagggcttaa aattaacatc cgaaaaaccc aagggatgag atctggagtc aagaactcaa      2340
     caccgctgca aataggcaca gatattgtag aacaagttca caacttcaca tacctcggta      2400
     gcgtcgtrtc agtagcagga ggtacagaac aggacatctc ttcacgaatt gccaaggccc      2460
     gagcaacttt cacgcagcta cgacccattt ggcagtcacg taaattaacc cgtagagtta      2520
     aactcaggat ctttggctct aatataaagt cagtgctgct ttatggttgc gaaacgtgga      2580
     aggtaaccaa agctgtgtcg caccagcttc aagtttgcgt aaatcgatgt cttcgccaaa      2640
     ttcttggtat ccactggccc gaactaattt cgaatgtcaa ccttcgtgaa ctttgccgag      2700
     aatcwccaat cgaccagcaa atcaaacgtc gcaagtggaa ctggattggg cacacgctgc      2760
     gccgaggtcc cggccatatt ccgaagcagg caatggattg gaaccctcaa ggaaagcgca      2820
     aacgtggccg tcccaagcaa acctggagac gttcagtttt agacgaggcg aaaaagattg      2880
     gcaagacttg gaacgaaatt aaacgagaag ctcaagatcg tgcaaaatgg cgaaactctg      2940
     tggatgccct ctgccccaac tcggggacat aggaatataa gtcaagtaag tca             2993
//
ID   RTE-18_HMM  repbase;    DNA;    INV; 930 BP.
XX
AC   .
XX
DT   01-MAR-2013 (Rel. 19.10, Created)
DT   01-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-18_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-930
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2820-2820 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..781
FT                 /product="RTE-18_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="DKYLSHLRFADDIILLSNSANEIQVMMTALHRRSEKA
FT                 GLEINFDKTKILTNSTKTNIKINNQQIEYVKEYIYLGKLITFRDIDTEEID
FT                 RRITLTWKRYWSLKHLFKSKMPITLKRRLMDSCILPTLVYGCQTWSLTEAN
FT                 AKKISVCQRAMERSLLKTRLKDKVRNEEVRRRTKVKDAIDHVRQMKWKWAG
FT                 HLARCRDGRWTRVVTEWRGPEXCKXRVGRPVKRWSDDIRAVAGSKWLSLAR
FT                 NRKKWQELEEAFTRTGVPX"
XX
SQ   Sequence 930 BP; 331 A; 171 C; 198 G; 222 T; 8 other;
     agacaaatat ctaagccact taagatttgc tgacgacatt atacttctat cgaacagcgc        60
     caatgaaatc caagtcatga tgacagctct acatcgacgt agtgaaaaag caggattaga       120
     aataaatttc gataagacaa aaattctgac gaactctacg aagaccaata taaaaataaa       180
     taaccagcaa atagaatacg taaaagaata catataccta ggcaaattaa taacatttag       240
     agatatagat acagaagaaa tagataggag aatcactttg acgtggaagc gatactggtc       300
     cctaaaacac ttatttaaat caaaaatgcc tattacwctt aaaagaagac tgatggactc       360
     ctgtattctt cctactctcg tctatggmtg ccagacgtgg tccctgacgg aagcaaacgc       420
     aaaaaagatc tcagtatgtc aaagggctat ggagaggagc ttactgaaaa caaggctaaa       480
     ggataaagta agaaacgaag aagtaagaag acgaacgaaa gtgaaagacg ctatagatca       540
     tgtgagacaa atgaagtgga agtgggccgg acatttggcg agatgcagag acggacgttg       600
     gacgcgggtc gtgaccgagt ggcgcggtcc ggaggsctgc aagsgtcgcg tcgggcgccc       660
     cgtcaagcgc tggtcggacg atatccgcgc tgttgctggw tctaagtggc tctcactagc       720
     acgaaacagg aaaaaatggc aagaactgga ggaggccttc acccgcacgg gggttcctas       780
     ataagactta acataattac taacactttc aacttttaat tactacctat aattactaac       840
     attctttact ttatattaac gcmtaaatka actacttgta ggtaaaagga acaaataaag       900
     gctttttatt ttattttatt ttattttatt                                        930
//
ID   RTE-18_LMi  repbase;    DNA;    INV; 3434 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3434
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3479-3479 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(599..667,671..1051,1033..3414)
FT                 /product="RTE-18_LMi_1p"
FT                 /translation="MDRRKLKILGLSEKSGKAVGRKHEMDMCFTGVVTKES
FT                 KNGVAFVLHKDIDVQTDIKYVSDRIIQMRLRAGNARILFCKYMHHXQDVPR
FT                 KRRAFPYELEEQITVENIIIMGDLNAQVGKERLGCENIIGPHGYGNRNLEG
FT                 ENLIDLCVETTFVCRNNLTIQNTWYQKRESHEITRYSWDGKLKTVIDFIIT
FT                 DRKAGQYVIDVKVIPSECLDSDHRLLIAALKDVHVPKFKQKRMPKIRTWLL
FT                 KDTEKKRNYEAQIATKLPTNEKGGVEEEWSLFKETLVKEATDICGKTSATP
FT                 KQKETPWWNDRVKTAVKDRNILKRKLDHEKQKTDARRNEVTIEHLAQEYRR
FT                 KKLAVKRIIQEEKKKCWEDFTIRIEEDCQGSRKLLYKILKNKRNEYVNILV
FT                 LETDDGNLVQTEEGIRDEMKKHFSMLLNGDEDNTTINVCRVINEAQTNGHP
FT                 LTRREVETALKSMRNGKSTGFDELSSDMIKAAGTTGLNWLHRVLSVIWEEN
FT                 KIPEDWTKGVIIPLFKKGNRRKCGNYRGITLLSHTLKLLEKIVEGRLRKVV
FT                 EPLLEEEQHGFRKDRGTMDLIFAIRMLTEKYWEYGRNLVIIFVDIEKAYDS
FT                 VPRSKIWECLENLKVPKYLIDKVKMLYQKCYSCVQISNGRSEWFETKRGVQ
FT                 QGSALSPLLFVIVMDKIIKSIKKIDSEPNALVFADDLMVWGETEAEAQRKL
FT                 NDWNNTFKNFGLKISKTKTVEMTINRQGTTSNIFLDGAKVESVSHFKYLGS
FT                 MISKDNTVKQEILSRTQKASSFYSQIRNLLWDDKMPQKAKATMYHTYFVPI
FT                 LTYGLETCTLLTRDLSRIQAMEMRFIRTMNQTTRQDKIRNEVNRKVAGIEV
FT                 PVTSIIRKRRLQWYGHLMRMNSERPAKKYFNLNLIGRRPRGRPRKRWIETV
FT                 RSDVEEKGHKWEDILEQKMYEDRRRWRALVHHTRETGVGK"
XX
SQ   Sequence 3434 BP; 1286 A; 623 C; 807 G; 717 T; 1 other;
     ggatcctgag ggctatgccg gcggtagctt agctgccaga agggtcacca agccggacag        60
     gccgaggggg aggagccaga ctaagcgtgc cccacaacgg ctatcgttcc cttcatcctg       120
     tcccgaacct atcctcacca gtccctttcc ctgccattcc ctccactcag tatacccagg       180
     gttacgggcg aagaccttaa tggcagcagc ggcggagaag aatacttcgg aacggcgaag       240
     ctggcagaag aggcgaccct ccttctgggg attaaataag aagggaacca ctgccttgtg       300
     gagaagaggg atcttcaaag gctaagggag cctgaaataa aatcccaact gtgttaggcc       360
     tagcaagtca acagttgagc aaatatatac tgctttcaaa cctaaaacaa gcctcggatg       420
     gaaaaatgaa aacgctggac atgacagttc ttctagtacc actcgaagta atgacggtaa       480
     cgcctgatgc tcatcgaaga taccagaaga cacaaaaccc ttccaagaag gaacaactga       540
     aaattggaca ctcaatatcc tcactctcac aaacaaatgt gaagaattag tagatcttat       600
     ggacaggcgt aagcttaaga tattgggatt gagtgagaaa agtggaaaag ctgtgggaag       660
     aaaacactga gaaatggata tgtgctttac tggagtggta acaaaagaat ccaaaaatgg       720
     agtcgccttt gttctccata aagatataga tgttcagaca gacatcaaat acgtgagcga       780
     caggatcatc cagatgagac taagggctgg taatgcacgc atactgtttt gcaagtatat       840
     gcaccacakg caggatgtac cacggaagag aagagcattt ccttatgagc ttgaagaaca       900
     aataacagtg gagaacatca tcatcatggg cgatctgaat gctcaagttg gtaaagaaag       960
     actaggatgc gaaaacatta ttggtcctca tggttatggg aacagaaatc tggaaggaga      1020
     gaacttaatt gatttgtgtg tcgaaacaac ttaaccatac agaacacatg gtatcagaag      1080
     agggaaagtc atgaaattac gagatacagc tgggatggca agctcaagac tgtgatagac      1140
     tttatcatta ctgacagaaa agctggtcag tatgttatag atgttaaagt aatacccagt      1200
     gagtgcctag acagcgacca ccggctatta attgctgccc taaaagatgt tcatgtgccc      1260
     aaatttaaac aaaagagaat gccaaaaatt aggacttggc tgttgaagga cacagaaaag      1320
     aaaagaaact acgaagcaca aatagcaacc aaactaccaa caaatgagaa aggtggtgta      1380
     gaagaagaat ggtctttatt caaagaaacc ctagttaaag aagccacgga catctgtgga      1440
     aaaacgagtg ccacaccaaa acagaaggaa acaccttggt ggaatgatcg ggtgaagaca      1500
     gcagtaaagg ataggaacat actaaaaaga aaattagacc atgaaaaaca gaaaacagat      1560
     gctagacgaa atgaggtaac aattgagcat ctagcacagg aataccgcag aaagaaacta      1620
     gctgtaaaaa gaattatcca ggaagaaaag aaaaagtgct gggaggactt taccataagg      1680
     atagaggaag actgtcaggg cagtagaaaa ttactataca aaatactaaa gaacaaacga      1740
     aatgaatatg taaatatcct tgtactggaa acagatgatg gtaacttagt acaaacagag      1800
     gaagggatca gggatgaaat gaagaagcac ttcagcatgc tgctaaatgg agatgaggac      1860
     aacaccacca tcaatgtctg tagagttatt aatgaagccc aaaccaatgg acacccatta      1920
     acacggcgtg aggtagaaac agcattaaag agcatgcgga atggaaagtc aacaggcttt      1980
     gatgagctca gctcagacat gataaaggca gcaggaacaa caggcttaaa ttggctgcac      2040
     agagtgttat cagtgatttg ggaagaaaac aaaatcccag aagattggac taaaggagtc      2100
     atcatccctc tgtttaaaaa gggcaatcgg cgaaaatgtg gaaactacag aggcatcacg      2160
     ctgctgtccc acacactgaa gctgttagaa aagatcgtag aaggaagact tagaaaggta      2220
     gttgaaccct tgcttgagga agaacaacat ggattcagga aagaccgagg tactatggat      2280
     cttatttttg caataagaat gctaacagaa aagtactggg aatatggaag aaatcttgtt      2340
     attatatttg tagacatcga aaaagcatat gacagtgttc ctcgaagcaa gatatgggaa      2400
     tgtttggaaa acctaaaggt gccaaagtat ctgattgata aagtcaaaat gctataccaa      2460
     aagtgttata gctgtgtcca gataagcaac ggacgatcag aatggttcga aacaaagaga      2520
     ggtgtccagc aaggaagtgc cctatcacca ctcctatttg taatagtaat ggacaaaatt      2580
     ataaaatcta tcaagaaaat agacagcgaa cctaatgccc ttgtttttgc cgatgatttg      2640
     atggtatggg gagagacaga agctgaagca cagaggaaac tgaatgattg gaacaacaca      2700
     ttcaaaaatt tcggactaaa gataagtaaa acaaagacag tagaaatgac catcaacagg      2760
     caaggaacaa catcaaatat atttctagat ggggccaaag tagaatctgt ttctcatttc      2820
     aaatacctag gaagtatgat ctctaaagac aacaccgtta agcaggaaat actcagcaga      2880
     acacagaaag catccagttt ttacagtcaa ataagaaatc ttctctggga tgataaaatg      2940
     ccacaaaaag caaaagcaac catgtaccat acctatttcg ttccaatcct tacatacggc      3000
     ttagaaacat gtaccctact aaccagagac ctcagtagaa ttcaggcaat ggaaatgaga      3060
     ttcattagaa ctatgaatca aacaaccaga caggataaaa ttaggaatga ggtgaataga      3120
     aaagtagctg gtattgaggt tcctgtcacc agcatcataa ggaaacgtag acttcagtgg      3180
     tatgggcact taatgagaat gaatagtgaa agacctgcta aaaagtattt caacctcaac      3240
     ctcataggaa gaagacctcg gggaagacca aggaaacgct ggatagagac tgtaagatca      3300
     gatgtggagg agaaaggaca caaatgggaa gacattctgg aacagaagat gtatgaagac      3360
     aggaggagat ggcgagcgct tgtacaccac acccgggaaa ctggagttgg aaaatgatga      3420
     tgatgatgat gatg                                                        3434
//
ID   RTE-18_PPo  repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-18_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-274
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3171-3171 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..220
FT                 /product="RTE-18_PPo_1p"
FT                 /translation="HMMRDTKDKWSKVVTEWYPRDGKRSRGRQQIRWEDDL
FT                 RLTAGPHWRRVTRDRKQWKSLEEAYAKRHAEIRDIL"
XX
SQ   Sequence 274 BP; 97 A; 39 C; 79 G; 59 T; 0 other;
     gcacatgatg cgtgatacaa aagacaaatg gagcaaggtg gtaaccgaat ggtatccgag        60
     ggatggaaaa aggagtcggg gacggcagca aataagatgg gaggacgact tgaggttgac       120
     tgccggtcca cattggagaa gagttacgcg agatagaaaa cagtggaaga gtttggagga       180
     ggcctatgcc aagaggcacg ctgaaattag ggacatacta taagtcacta tatttaatct       240
     aatttcagaa taaaaggcta tattattatt atta                                   274
//
ID   RTE-19_Hmel repbase;    DNA;    INV; 1280 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-19_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-1280
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1250
FT                 /product="RTE-19_Hmel_1p"
FT                 /translation="LSXVYKLFSRVITNRLARRLDEFQPAEQAGFRKGYXT
FT                 IDHIXTVRQIIQKTXEYNLPLCLAFVDYEKAFDTIEIWSVLESLQRCQVDW
FT                 RYIKVLGSLYNAATMTVQVQNQQSKXIHLHRGVRQGXVISPKLFTXALEDX
FT                 FKXXXWKGRGINIDGKFLSHLRFADXIXIXAETVQDLQYMLSTLXESSARI
FT                 GLRMNLDKTKIMFNEHVIPEPIALHGVPLEVVQEYVYLGQTVQLGRNNFEM
FT                 EARRRIQLGWAAYGQLRDVFSSSIPQSLKTKVFNECVLPVMTYGAETWTLT
FT                 VRLVHQLKVAQRAMERAMLGISLKDRIQNEVIRQRTNAIDIAQRISRLKWQ
FT                 WAGHICRRTDDRWGKRVLQWRPRLGKRNVGRPPARWGDDIRKVAGSGWMRR
FT                 AEDRAQWRAIGEAYVQQWTRTG"
XX
SQ   Sequence 1280 BP; 348 A; 263 C; 330 G; 312 T; 27 other;
     tgttgagcva tgtctayaar ctgttttcta gggtcatcac gaatcgtctt gcvcgtagac        60
     ttgatgaatt tcaacctgcc gaacaggccg gatttcgcaa aggctatakt accatagacc       120
     atatthacac ggtacggcag attatacaga agaccraaga gtataatctt cccttgtgcc       180
     tagcgtttgt ggactatgag aaagccttcg acaccattga aatctggtct gttcttgagt       240
     ccttgcaacg rtgccaagtc gattggcgat atatcaaagt gttgggaagc ctttataatg       300
     cagcgactat gaccgtccaa gtacagaatc agcagtctaa ryttatccac ctgcatcgag       360
     gagtgagaca aggkgrcgta atttctccca aattattcac taawgcaytg gaggataygt       420
     tcaagmmgck kcmctggaaa ggacggggca taaacataga tggcaaattt ctctcacact       480
     tgcggtttgc agacgahatt rtcattkttg ctgaaaccgt gcaggacctg caatatatgt       540
     tgagcacctt ggmtgartct tctgctcgca tcggtcttcg gatgaacttg gataaaacca       600
     agataatgtt caacgaacat gtaattccgg aaccgattgc acttcatgga gtacctctcg       660
     aagttgttca ggaatatgtc tatcttggtc aaactgtaca gttaggtaga aacaacttcg       720
     agatggaggc tcgcagaaga atacagcttg gttgggcggc atatgggcaa ctgcgtgatg       780
     tcttttcgtc atcaataccg caaagtctaa agacgaaggt ctttaatgag tgcgtcctac       840
     cagttatgac atacggagcc gagacgtgga cactgacagt gcgattggtc caccagctta       900
     aagtcgctca gcgtgctatg gaaagggcta tgcttggaat atctctgaag gatcgaattc       960
     aaaatgaagt tatccgacag agaaccaatg ctatcgacat agcccaaagg attagcaggc      1020
     tgaagtggca atgggctggt cacatttgcc gcagaaccga tgaccgttgg ggtaagcgcg      1080
     ttctacagtg gagaccacgc ctcggcaagc gtaatgtagg acgtcctcca gctagatggg      1140
     gtgacgatat tcgyaaagtr gcgggcagcg gctggatgcg aagagctgaa gatcgagctc      1200
     agtggcgtgc cattggagag gcctatgtcc agcagtggac gaggacaggc tgatgatgat      1260
     gatgatgatg atgatgatga                                                  1280
//
ID   RTE-19_LMi  repbase;    DNA;    INV; 3034 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 19.12, Created)
DT   08-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3034
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3480-3480 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           988..3006
FT                 /product="RTE-19_LMi_1p"
FT                 /translation="VGKHFFVKMDRWPKEETANEIWKRLSKKLKESAEEVL
FT                 GMRKLKRESKEWVTKTMLCKMEERGKWKTVGTEEGKILYRKLNNELRRETE
FT                 EARKTWLRDRCQEIEALEKEGKYEMMYRLAADLVFEAKKNRTSIEIERSDG
FT                 TVVHKLEEVLGRWQEYVECLYEADQKPNNIELEEEMRVTEEDKGCCILVEE
FT                 EKALREMKNRKASGIDGLPAELFKSLGSSGVKELTYLCNKIYEKGEWPDDF
FT                 LSSVMIPIEKKRNAKKCEDFRTISLISHAAKVLLRVINRRLHGRLEKSIAE
FT                 EQFGFRRGKGTRDAIGLLRIIGERYIERGREVYTVFIDLEKAFDRVQWNKL
FT                 MDILRKNGVDWRDRRLIKNLYLKQKIRVQIRNEMTEESTIGRGVRQGCCLS
FT                 PILFNICLEHIMQKCMKQNRGVRVGGRRIEGIRFADDMVLLAESERTMIEM
FT                 LNDFSKTCEEFGMKINKKKTKCMVINARKVGTIRLGQEVIEQVSAFKYLGS
FT                 IITEDMRCHKEVKTRIAIAKEAFNKKRRLLCGRMDRNLRKRLTKCFIWSVA
FT                 LYGSETWTLRKEDERRLEAFEMWTWRRMEGIKWVDKVRNEDVLRRVGEERE
FT                 ILKVIRKRKRNWLGHWMRRDCLLMDAMEGTVNGRRRRGRRRYQMVDSIKIG
FT                 NSYEKTKRVANDRTAWRAACEDLP"
XX
SQ   Sequence 3034 BP; 1167 A; 358 C; 870 G; 639 T; 0 other;
     gtggaaagga acgggatact accacattaa ttttccccag gaaacacaag gtatggctct        60
     ctttgtaaaa gaatacggag gcaaaacttc tcctcattcg gatctccggg aggggaatac       120
     atcaagatca aataccgaag agatggaagt ggatgaaaaa gtaaagaggg aagagaggtt       180
     aaggattgga acatggaatg tgcttacatt attgcaggtg ggaaagctgg aaaatgacaa       240
     acagaaaatg atgaagaaca gccttgatgt actaggtaca tgtgaagtga gatgggggag       300
     caagggaaag atagctagtg gagagtacaa actgttttac tcagacatgg agaagaatgg       360
     tagctatggc ttggcaatta cgatacgaaa acagctgata aagaacgtat tgagattggt       420
     gtatgtagat gaaaggttga tgatgatgag attaaaaggt gacaagagga catagtttta       480
     atacaaatat gcatgccaac aagtcaacat accgatgagg cagtagaaga atattacgaa       540
     aggttgaaca aattatggat aaggaaaaaa gaaatgcttc atgtgtaata gagatttgat       600
     gcaatggtag gaaagggaaa acaagagggg gggagaagtg gttggaagat ttggactcgg       660
     gaataggaat gacaggggtg agaggctggt taacttctgc agagaaaatt ctcttgtgat       720
     tgggaacacc ttgtttgaac accacaaaag acgaagatat acatggatat ctacgctgaa       780
     tgacggcagg taccaaattg attacatcat tatacagaat aggtacaaaa actgcctaaa       840
     aatgcaagag cataccctgg agcagacata gattctgacc acaacttggt ggtggcagac       900
     ttgcgcatta agttgaagag tgtgagagga ggaaaaccga ggagaaattt gacttagaag       960
     actaaaggaa gagggtaaga aaactgagtt ggaaaacact tttttgtcaa aatggataga      1020
     tggcctaaag aagagactgc aaacgagata tggaagagat tgagcaaaaa actcaaggaa      1080
     tctgcggaag aagttttagg gatgaggaag ctcaaaagag aaagtaaaga gtgggtaact      1140
     aagacaatgc tgtgcaagat ggaagagaga gggaaatgga agacagtagg aactgaggaa      1200
     gggaaaatat tgtatagaaa gctgaataat gaactaagga gagaaacaga agaggcaagg      1260
     aagacatggt tgagagacag atgtcaggaa atagaggcac tagaaaagga aggaaaatat      1320
     gaaatgatgt atagattagc tgctgatcta gtctttgaag caaagaaaaa caggacaagt      1380
     attgaaatag aaagaagtga cggcacagtg gttcataaac tggaagaagt gttgggaagg      1440
     tggcaagaat acgtagagtg cttatatgag gccgatcaaa aaccgaacaa tattgaactg      1500
     gaagaggaga tgagagttac tgaagaggac aaaggatgct gcatcttggt agaagaagaa      1560
     aaggctttaa gagagatgaa gaatcgcaaa gcaagtggaa ttgatggact accagcagag      1620
     ttgtttaaga gccttgggag tagtggggtg aaggaattaa cttatctatg taataagata      1680
     tatgaaaaag gtgaatggcc agatgacttt ctctcatcag taatgatacc tattgagaag      1740
     aaaagaaatg ccaagaaatg tgaggatttt cgaaccataa gtttgatttc tcatgcagca      1800
     aaagttctgc tacgggtgat aaatagaaga cttcatggaa gactggaaaa aagtattgca      1860
     gaggagcagt ttggttttag aagaggaaaa ggaacgagag atgctattgg actgctaaga      1920
     attataggcg agagatacat cgaaagagga agagaagtgt atactgtttt cattgacttg      1980
     gagaaggcct tcgacagagt acagtggaat aagttaatgg acatactaag aaagaatgga      2040
     gtagactgga gggacagaag gctgattaag aatctatacc tgaaacagaa aataagagta      2100
     caaattagga atgagatgac agaggaaagc acaataggta ggggagtgag gcaaggttgc      2160
     tgtctctccc caatactgtt taacatatgc ctggaacaca ttatgcagaa atgtatgaaa      2220
     caaaacagag gtgtacgggt cggtggtagg agaatagaag gtattcgatt cgccgatgat      2280
     atggtattac tggcagagag cgaaagaact atgattgaaa tgttaaatga tttcagtaag      2340
     acctgtgagg aatttggaat gaaaattaat aagaaaaaga caaaatgtat ggttataaac      2400
     gcaagaaaag taggaacaat aaggctaggt caggaagtaa tagagcaagt tagtgctttc      2460
     aaatacctgg gaagcataat tacagaagat atgagatgcc acaaggaagt gaaaacccgc      2520
     atagcaattg ccaaggaggc atttaataag aagaggaggc ttctatgcgg ccgtatggac      2580
     aggaatctga ggaagagact gacaaaatgt tttatatgga gtgtggcact atatggctct      2640
     gagacatgga cactgagaaa agaggacgaa agaagattag aagcattcga gatgtggact      2700
     tggaggagga tggaagggat aaagtgggta gacaaagtga ggaatgagga cgtgttgaga      2760
     agagtgggtg aagagagaga aattctaaag gtaatcagaa agaggaaacg gaattggctt      2820
     ggacattgga tgagaagaga ttgtctgctg atggatgcta tggagggaac agtgaatgga      2880
     agaagaagaa gaggacgcag aagataccag atggttgaca gtataaagat aggaaacagt      2940
     tacgagaaaa caaagagggt agcaaacgac aggactgcat ggagagctgc atgtgaagac      3000
     ctgccttagg gcagaacact gatgatgatg atga                                  3034
//
ID   RTE-19_PPo  repbase;    DNA;    INV; 3406 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-19_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3406
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3172-3172 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(297..350,354..740,744..1097,1019..2728,
FT                 2732..3019,3000..3278)
FT                 /product="RTE-19_PPo_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMRPRSSSLSLTKPNQIKQLNTSNQKRNNPNPAGHRG
FT                 VARPLPPKSMSSGSKLKSKLYLATLNVRTLMEDHRLIELEHAISQIKWDII
FT                 GLCEVRRSGDEIREYNKYIFYYKGEKKGRRGIGFLINKYLKDKIISFEGIS
FT                 DRIAVLNILNGFKHPMSIIQAYAPTEQDTNAEKDKFYEKLTEVIQKSNKNI
FT                 IVMGDFNAKTGVKSNKDEFVLGKNSCGERNENGQRLIDLCFASNLKIANSF
FT                 YKKEKSSGRGCLQTEGTEMKLISFQFLQKRKVKWTWMSPNGRNRNEIDFIL
FT                 TRETRILSDVSVINKLNFSTDHRMLRGTLICEDKNSRKHIISNKNGKTITV
FT                 PHNILEDIEKTLQDIKKQQTIQDKYDFLEKTLKEVNIFGTKRGKRNKLNEE
FT                 TKKILEERNELLDNRRENRHSIANISKKIQSSIRKHRKEERLKTLKEQIEK
FT                 TGGMTKGLKQLKEYSQWIPNIKLQKKKETYRITSRRSSIAKTATEFYKQLY
FT                 TESGESIVASKNIIEEGDSNEEEIPTILETEVAGAIRSQKNDKAPGDDKIP
FT                 NELLKSTLSSITKALTILFNEIINSEQIPVQWTKSTITLLHKKGDKQDINN
FT                 YRPISLMSNIYKVFSKVILGRVTQTLDANQPREQAGFRADYSTMDHINVVK
FT                 QIIEKCNEYGQNYYLAFVDYSKAFDSLSHNYIWKTLASQGIERKYINIIKE
FT                 IYKNSTAKIQLEQVGEEFKIERGVRQRDPLSPKIFTAVLENIFRNIDWDKF
FT                 GININGTKLNHLRFADGIVLFAETPETLRTMLQQLDQESRRAGLSMNPMKT
FT                 KLMTNAEKDIIELRHEIIEYVDEYIYLGQIISVNQHSKEIDRRISNAWKRY
FT                 WSLKEVVKKKSIPMSIKTKLYNTCILPCLTYGCQTWPSTTKHNLKLANCQR
FT                 HMERSMLDIKLRNRWRNVTIREKNKSKEKKTKVNDVFKKIKKLKWNWTGHI
FT                 IRTNKGKWTKDIMDWYPREGKRQRGRQIKRWEDDLPKGWRRLARDRETWKK
FT                 LGEAYVEGQPDTQLDAGK"
XX
SQ   Sequence 3406 BP; 1485 A; 544 C; 639 G; 738 T; 0 other;
     ggaaaagaag ggagatatta aaaaataaaa ggagtttgaa gcaggtatat gttactgaag        60
     attttccgaa agaagtatta gaaaagcgaa aagaattaca aataaaggtt aaagaggagc       120
     gtgctaaagg gaatatagcg tatataaaat atgataagat agtagtcaaa gaaggccatt       180
     tagtcaaaga aaaaaggaaa agagatcaat caacatcacc agaaaatcaa agttatgcca       240
     aaaaactggt tagcaataat tcattgataa aggaaaatag gaaaaacgct ttcgacatga       300
     tgagacctcg ctccagttca ttatcattga cgaaacctaa ccaaattaag tagcaattaa       360
     acaccagcaa ccagaaacgg aacaacccca acccggctgg tcaccgtggg gttgctagac       420
     cattaccccc taaaagtatg tcttcaggtt caaaactaaa aagtaaatta tacctagcaa       480
     cattaaacgt cagaacatta atggaagacc acagattaat agaattagag catgctataa       540
     gtcaaataaa atgggatatt ataggacttt gcgaagtaag aagatcagga gacgagataa       600
     gagaatacaa taaatatata ttttactata aaggcgaaaa gaaaggaagg cgtggtatag       660
     ggtttcttat aaacaaatac ctaaaggata agataattag ttttgaagga atatcagata       720
     gaattgcagt tctaaacata taactgaacg gatttaaaca cccgatgtcg attatacaag       780
     catatgcccc aaccgaacag gatacaaatg cagagaaaga caaattctac gaaaaactga       840
     ctgaagttat acaaaagtct aataaaaata ttatagtcat gggagacttt aatgcaaaga       900
     caggagtaaa atctaacaaa gacgaattcg tacttggaaa aaatagctgc ggagaacgaa       960
     acgaaaatgg acaacggcta atagatcttt gctttgcgtc gaatctgaaa atagctaaca      1020
     gtttttacaa aaaagaaaag tcaagtggac gtggatgtct ccaaacggaa ggaacagaaa      1080
     tgaaattgat ttcattctga caagagaaac tcgaatactc tctgatgtaa gcgtaattaa      1140
     taaattaaat ttcagtactg accatagaat gctaagagga actttaatat gtgaagacaa      1200
     gaattcaagg aaacatatta tatcaaacaa aaatggtaaa acaataacgg taccacataa      1260
     catactagaa gacatagaaa aaacgttaca ggacatcaaa aaacaacaaa ctatacaaga      1320
     taagtacgac ttcctggaaa aaactctcaa agaagttaac atattcggaa cgaaaagggg      1380
     aaaacgaaac aaattaaatg aagaaacaaa aaaaatatta gaagaaagaa atgaactact      1440
     ggacaaccga agagaaaacc gtcacagcat agcgaatatt agtaagaaaa tacaatcgtc      1500
     aatcagaaaa cataggaagg aagaacggtt gaaaacatta aaagagcaaa tagaaaaaac      1560
     gggtggaatg acaaaggggc taaaacaact aaaagaatat tcacaatgga tacctaacat      1620
     caaactacag aagaagaaag aaacataccg gataacttca agaagatcat caatagctaa      1680
     gactgcgaca gaattctaca agcaattata cacagagagt ggcgaatcaa tagttgcgag      1740
     caaaaatatt attgaagaag gagatagtaa cgaagaagaa ataccaacaa tattagaaac      1800
     agaagttgct ggagcgattc gatcgcagaa aaatgacaaa gcgcctggag acgataaaat      1860
     tccgaacgaa ctattaaaaa gcacattatc atcgataacc aaagccttaa ccatcttatt      1920
     caacgagatc ataaatagtg agcaaattcc cgttcaatgg acaaagtcta ctataacctt      1980
     gttacacaag aaaggagaca aacaagacat caacaactat agacccatat ccttaatgtc      2040
     aaatatttac aaagtgttct caaaagtaat actcggcaga gtgacccaaa cattagatgc      2100
     aaaccaacca agggaacagg caggttttcg cgcagattat tctacaatgg accatattaa      2160
     tgttgttaaa cagatcatag aaaaatgtaa tgaatatggt cagaactact acttagcatt      2220
     cgtagattac agtaaggcct tcgattccct gagtcataat tacatttgga agacgctagc      2280
     cagtcaaggt atagagagga agtacataaa cattattaaa gagatatata aaaactccac      2340
     cgcaaaaata caactagaac aagtaggaga agaatttaaa atcgaaagag gcgtaagaca      2400
     aagagatcca ctttcgccta aaatatttac agctgtactt gaaaacatat tccgaaatat      2460
     cgattgggac aagtttggca taaacatcaa tggaacgaaa ttgaatcatc ttagattcgc      2520
     ggatggcatt gtcctgtttg ccgagacacc agagacgctt agaacgatgc tgcagcaact      2580
     agaccaggaa agcagaagag cgggcttatc tatgaaccca atgaaaacaa aattgatgac      2640
     aaacgcagaa aaagatatta tagaattgag acatgagata atagaatacg ttgacgaata      2700
     catatattta ggacaaatta tatctgtata aaaccaacac tcaaaagaaa tagacagaag      2760
     aataagcaat gcctggaaac gctattggtc acttaaagaa gtagttaaaa agaaatctat      2820
     accaatgtca atcaaaacca aattatacaa cacatgcatt ctcccttgcc taacgtacgg      2880
     atgccaaact tggccttcca cgaccaaaca caacttaaaa cttgcaaact gtcaacgaca      2940
     catggaacga agcatgctcg atataaagtt aagaaaccga tggagaaatg taacaataag      3000
     agaaaaaaac aaaagtaaat gacgtcttca aaaaaattaa aaaactaaag tggaattgga      3060
     caggacacat tattaggaca aataaaggaa aatggacaaa agacatcatg gattggtacc      3120
     ccagagaagg aaagagacaa agaggacgac aaataaaaag atgggaagac gacctaccga      3180
     agggatggag acgattagcg cgcgatagag agacgtggaa gaaactaggg gaggcctatg      3240
     tcgaaggaca acctgacacg caattggatg ctggaaaatg aaaatgtaca tacatacttt      3300
     attaaaaaaa aaacttttta tatttaactt taactattta tattgttatt aataagttgt      3360
     aaatattgta aattgtcagc gaataaaggc tttatctatc tatcta                     3406
//
ID   RTE-1BN1_DAn repbase;    DNA;    INV; 643 BP.
XX
AC   .
XX
DT   21-AUG-2012 (Rel. 17.09, Created)
DT   21-AUG-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-1B_DAn; RTE-1BN1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-643
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(9), 1918-1918 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. Both termini are ~94% identical to
CC   those of RTE-1B_DAn; thus likely an internally deleted derivative
CC   of RTE-1B_DAn. But its 5' head is similar to tRNA and it might be
CC   a SINE.
XX
SQ   Sequence 643 BP; 201 A; 150 C; 167 G; 125 T; 0 other;
     ggggggcctc atagcctagt ggttagtgta ctagctcgct aagcgtgagg tcgtgggttc        60
     gagccccact cgtgtcaagt gcatggccct gcaagttttt cggcgctcgc gcatatgatg       120
     taagtagcga aaagctctcg ttggattctc gctatttata attatgtgca tgagacccga       180
     aaaaccggca ttcccagatg tcgttaggtg gcaagcccac ttctgagata ggttgcactc       240
     ggctaatcac cggatcgact gaacaataac gattacagaa acaaacacat gattagaaaa       300
     aaacacccac acccccagcc cgatgacgac ccgccgcttt tcgcaacgga cacgaattgg       360
     acaatggaat gtgaggaccc taatggagcc atccagaatt gcgcagtttg aataaggaga       420
     tgggcatagt taggattgga accctggagt ggaacccgca aggaagaaga agagtgggac       480
     gccccaaagc taacctggcg ccgatctaca atacgcgaac tcgcagacaa taatacatca       540
     cctggggact tggcaaagag aacagagggt ccggtggaat acacatgtgg atgccctaag       600
     ctcccaagcg gagtaatagg aataaaaaaa aaaaaaaaaa aaa                         643
//
ID   RTE-1B_DAn  repbase;    DNA;    INV; 3251 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1B_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3251
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 403-403 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. ~78% identical to RTE-1_DAn.
XX
FH   Key           Location/Qualifiers
FT   CDS           322..3228
FT                 /product="RTE-1B_DAn_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTTLRFSQRTRIGQWNVRTLMEPSRLAQFEKEMEKMQ
FT                 IAIAGISEMRWKGSGTTTTTHGNLVVHSGSSDGGRNGVGIYVSKQYKQTLI
FT                 TWNPVSDRIITARFRCNARHITIVQCYAPTEDASDDIKDDFYNALTSSLTK
FT                 SKRGDIKILMGDFNAKLGPNNNGLEPIMGRHGVGTRSNNGDRLADLCQTFQ
FT                 LVIGGTVFPHKEVHKYTWTSPSGHTRNQIDHLCISRKWRHSLSDVRNRRSA
FT                 SIDSDHELLVGELLIKLRRSHTATRRSTRRPPPLNLHRLGDPVISTRLATM
FT                 LREQLTPQQNHTWEHTCSTLRSTAEGLLGTRQRRSTDWISTRTWELISRRN
FT                 SLKSKADHDCRARDEYKELCKLVKKSARNDKRALIDRLAENAESAANANNM
FT                 RSLYQTIGKLSGSYQKQNHPVRDVNGTLLVDDDAQIRRWRQHFLEISHTEH
FT                 ASSADDDFRSIVPNTNTRIPHTTPSVREIRDAIRKLKNNKAAGEDGLPAEL
FT                 LQVDTLLMAETLHPHFESIWENERIPPSWKKGIIVKLPKKGDLSDCNNWRG
FT                 ITLLNTSYKVLATLLNERLLEKIEPTIRDEQGGFRPHRSCVDQANTLRAIT
FT                 EQAVEWRAPLYLLFIDFQKAFDSVDRAAIWRALARKGVPLNIINIVKAMYD
FT                 DADLAVLHNGKISAPFQTNTGVKQGCPLSPLLFNLVIDEIMSEVCSSNRGI
FT                 TWSLTRHLEDLDYADDICLLAHRFTDIQAKCSDLEARAKAVGLSINAAKTK
FT                 AMRILHSHQSRITICGKSVEYVDSFVYLGTVISANGGVEKDMENRLSKARS
FT                 AFGRLQRIWRNQQISRKTKLRIFNACIKSVLLYGSETWLTSQRMVLKLQAF
FT                 VNKCLRIICGIFWPNRITNDDLWRCTNEAPIQQQIKRKKWKWIGHALRKGR
FT                 DSIVRMALEWNPQGSRRVGRPKLTWRRSTVRELADNNITWDLAKRTAQNRV
FT                 RWNALVDALSSQAE"
XX
SQ   Sequence 3251 BP; 1045 A; 809 C; 800 G; 597 T; 0 other;
     gggggcctca tagcctagtg gttagtgtac tagctcgcta agcgtgaggt cgtgggttcg        60
     agccccactc gtgtcagtgc atggccctgc aagtttttcg gcgctcgcgc atatgatgta       120
     aatagcgaaa aaagctctcg ttggattttt tcgctattta taattatgtg catgagaccc       180
     gaaaaaccgg cattcccaga tgtcgttagg tggcagcccc acttctgaga taggttgcac       240
     tcggctaatc accggatcga ctgaacaata acgattacag aaacaaacac aagatcagaa       300
     aacactcaca cccccaaccc gatgacgacc ctccgctttt cgcaacggac acgaattgga       360
     caatggaatg tgaggaccct aatggagcct tccaggcttg cgcagtttga aaaggagatg       420
     gaaaaaatgc agatcgcaat tgctggcata agcgagatga ggtggaaagg cagtgggacg       480
     acaacaacaa cacacggcaa tctagtagtg cacagtggga gcagtgatgg gggcaggaat       540
     ggagtaggaa tatacgtgtc aaagcaatac aaacagacac ttatcacctg gaatccggta       600
     tccgatagaa tcatcactgc tagattccga tgcaacgcta ggcacattac catcgtgcaa       660
     tgctacgccc cgacagaaga cgccagcgat gacatcaaag acgacttcta caatgccctc       720
     acatcttcac tcaccaagag caaacgaggt gatattaaaa ttctcatggg agatttcaac       780
     gcgaaattag gccccaacaa caacggattg gaaccaatca tgggccgaca cggtgtggga       840
     acacgtagca acaatggcga caggctggcc gacctatgcc agacattcca actagtcatt       900
     ggtggcactg tattccccca caaggaagtg cacaagtaca cgtggacatc accgagtggg       960
     catacacgca accaaattga ccatctgtgc ataagtagga aatggagaca ctcccttagc      1020
     gatgtacgga acaggagaag tgcgtcaatt gacagtgacc atgaactatt agtcggagag      1080
     cttttaatca agctcagacg aagtcacact gccaccagaa gaagcacaag aagaccaccc      1140
     cccctgaact tacaccgact tggagaccct gtcatatcca ccagattggc aacaatgcta      1200
     cgtgaacagc taacaccgca gcagaaccac acctgggaac acacatgcag cacactgagg      1260
     agcaccgcgg agggtttgct tggcacccga caacgcagga gcacagactg gatctcgaca      1320
     cgcacatggg agcttatcag tagaagaaat tccctcaagt cgaaagcgga tcacgactgc      1380
     agagcccggg atgaatacaa ggaactctgc aagctagtga agaaatcagc cagaaatgac      1440
     aagagagcac tgatagatag gcttgcagaa aatgcagaga gcgccgccaa cgccaacaac      1500
     atgcgctcac tataccagac aatcggtaag ctatctggaa gctaccaaaa acagaaccat      1560
     ccagtacgag atgtcaacgg aacactcctt gtcgatgatg atgcccagat ccgcagatgg      1620
     cgacaacact tcttagaaat cagccacaca gagcatgcga gcagcgcaga tgacgacttc      1680
     agaagtattg tacccaacac caacaccaga attcctcaca cgacaccatc tgttagagaa      1740
     attcgtgatg caatcaggaa attgaagaac aacaaagcag ccggagagga cggtttaccc      1800
     gcagaactgc tccaagttga cacgcttcta atggccgaaa cgttgcaccc gcatttcgag      1860
     agcatatggg agaacgagcg aatcccccca tcctggaaga aaggcatcat cgtaaaatta      1920
     ccgaagaaag gagacctcag tgattgcaat aattggcgag gaatcaccct gctgaacacc      1980
     agctacaaag tgctagccac tttactgaat gaacgtctac tggaaaaaat cgagccaaca      2040
     atacgcgatg aacaaggagg ctttaggcca cacagaagct gcgtagacca ggcgaacaca      2100
     ttacgcgcaa tcaccgaaca agctgtggaa tggcgcgcgc cgctgtacct cctattcatc      2160
     gatttccaga aggcgttcga ctcagtagat agagcagcga tatggcgggc gcttgcaagg      2220
     aagggagtac cactcaatat cataaacata gtgaaagcta tgtacgatga tgcggatttg      2280
     gcggtactgc acaatggaaa aatcagtgca cccttccaga cgaacactgg cgtcaagcaa      2340
     ggatgccctt tgtcaccgct gttgttcaac ttggtgatcg atgagattat gagtgaagtg      2400
     tgcagctcga accgcggcat aacatggagc ctcaccagac acctagagga tctggactac      2460
     gcggacgaca tctgcctcct agctcataga ttcaccgaca tccaagccaa atgcagtgac      2520
     ctcgaagctc gggccaaagc agttggactc tccattaatg cagcaaaaac caaagcgatg      2580
     cggatcctcc actcccacca aagcaggatc accatatgcg ggaaaagtgt cgaatatgtc      2640
     gacagcttcg tatacctagg caccgtaata tccgcaaacg ggggagtgga aaaagacatg      2700
     gagaatcgtc tgagcaaagc cagatctgct ttcgggagat tgcaacgcat atggagaaac      2760
     cagcagatca gcagaaaaac aaagctgaga atcttcaatg cgtgcatcaa atccgtactg      2820
     ctgtacggat cggaaacctg gctgacatcg caaagaatgg tactaaagct gcaagccttc      2880
     gtcaataagt gccttaggat catatgtggt atattctggc caaatagaat aaccaatgat      2940
     gacctgtggc gctgcacaaa cgaagcacca atccagcagc agataaagag gaaaaaatgg      3000
     aaatggattg gtcatgcact aaggaaaggt cgagacagca tagttaggat ggccctggag      3060
     tggaacccgc aaggaagcag aagagtggga cgccccaagc taacctggcg ccgatcaaca      3120
     gtacgcgaac tcgctgacaa taacatcacc tgggacttgg caaagagaac agcgcagaat      3180
     agggtccgat ggaatgcact tgtggatgcc ctaagctccc aagcggagta ataggaaaaa      3240
     aaaaaaaaaa a                                                           3251
//
ID   RTE-1B_DSa  repbase;    DNA;    INV; 2456 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 19.10, Created)
DT   08-NOV-2011 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila santomea.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1B_DSa.
XX
OS   Drosophila santomea
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2456
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila santomea.";
RL   Repbase Reports 14(10), 2771-2771 (2014).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~91% identity.
CC   Its 3' portion is ~98% identical to RTE-1_DYa from Drosophila
CC   yakuba. It is also ~91% identical to RTE-1_DSa, but is internally
CC   deleted at 1302-3.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(143..352,325..660,615..803,767..1204,
FT                 1153..2436)
FT                 /product="RTE-1B_DSa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPNTTTFGSLLLPNHFTPSPHYMEQNGVPHIVTGAPV
FT                 FCEQQQXPAGPDARYQTVRFSTTSNINVDATPRQHQRRRHSPMTLGGSPTT
FT                 GISRIWPITRSVEKLKPITETETRELNINGPPNSMTTIGISKRTRIGQWNV
FT                 RTLREPSRLAQFEAEMERLHIAIAGISEMRCPAVGKQQHQIATDEVSRSGE
FT                 TTTSNSNLVLRSGNNDGSRYGVGIYVSKRIKKTLHSWEPISDRLMTADSDV
FT                 ELDITHDSRFRCRARHINIIQCYAPTEDAKDDTKDDFYTALTATLSKTRQG
FT                 DINILMGDFNAKVGPNNTGLRSVMGQHGTGTRNDNGERLVELCQLFQLVIG
FT                 GTIFPHKDVHKYSWTSPSGNTRNQIDHICISRKWRRSLLDVRNKRGDLQEV
FT                 ETLATGRSEQKGRPIDSDHELVIGEVEIKLNCNYSRKTDNSQHRRAPYSTH
FT                 NVPSKLWNGEPRFTSCSSTPRRRSTQLKGQQYGDHLQGKEYLRTSSLSSNR
FT                 CMTMPTWRYCTTEKQVNLSRRTPEFGKDALYHSLLFNIVVDELMSEVCSSK
FT                 RGITWSLTRHLEDLDYADDICLISHRLGDIQRKSDDLVRIASSVGLEINVA
FT                 KTKAMRFNHSNQGNIIIHGNPIEFVNSFPYLGTIISNNGGVDDDVSSRLGK
FT                 ARSAFGRLYRIWKNREISRRTKLRIYNACVKSILLYGSETWLATKKVTQKL
FT                 QVFSNKCLRIICGIFWPNRIANTELWRVTSEPPIHTQIRKKKWMWIGHALR
FT                 RNPSSIVRMALDWNPQGSRRVGRPRATWRRTAQQELAQINITWENAKQTAQ
FT                 NRVRWKALVEALSSREK"
XX
SQ   Sequence 2456 BP; 795 A; 621 C; 571 G; 467 T; 2 other;
     ctcgtagtgt agtggatagc gcaactacct gtcaaacacg aggtcgtggg ttcaaacccc        60
     acccatgacg agagcatggc caccaaactt tcctctcaaa aagatacttt tctagttttt       120
     agagagtatt cttccatcca taatgcctaa tacaacaacc ttcggcagct tactcttgcc       180
     caaccacttc accccctctc cacactatat ggagcaaaac ggggtccccc acatagttac       240
     cggtgcacct gtgttctgcg aacagcaaca acamccagca gggcctgacg cgcgttacca       300
     gactgttcgc ttttctacga ctagcaacat caacgtagac gccactcccc gatgacgtta       360
     ggtggcagcc ccaccactgg gataagccgc atctggccaa tcaccagatc ggtcgaaaaa       420
     cttaaaccga ttaccgaaac agaaacgaga gaattaaaca taaacggccc cccaaattcg       480
     atgacgacca taggcatatc aaaacggaca cgaattggac aatggaatgt tagaactctg       540
     agagaaccat ctagattagc acagttcgag gcggagatgg agagactcca tattgcaata       600
     gctggaatca gtgagatgag gtgtcccgca gtggggaaac aacaacatca aatagcaacc       660
     tagtcctacg cagtggcaac aatgacggca gcagatacgg agtggggatt tacgtgtcca       720
     agcgcataaa aaagacactg cactcctggg aacccatttc tgatagactc atgacagccg       780
     attcagatgt agagctagac atataaacat catacaatgc tatgccccga cggaagacgc       840
     caaagacgac accaaggacg acttctacac tgccctcaca gcaaccctca gcaagacgcg       900
     gcaaggtgac attaacatcc tcatgggtga ctttaatgcg aaagtaggcc ccaacaacac       960
     cggactaaga tctgtcatgg gccaacatgg aactgggact cgcaatgaca acggagagag      1020
     attagtggaa ctctgccagc tattccaact ggtcatcggc ggcacaatat tcccacacaa      1080
     agatgtccac aaatactcct ggacatctcc tagtggtaac acgcgcaacc agatcgacca      1140
     catttgcatt agcaggaagt ggagacgctc gctactggac gttcggaaca aaaggggaga      1200
     cctatagaca gtgatcatga gttggtcatt ggagaagttg aaataaagtt gaactgcaac      1260
     tactcaagga agactgataa cagccaacac cgacgagcgc cctacagtac gcataatgta      1320
     ccgagcaagc tgtggaatgg agagccccgc tttacctcct gttcatcgac tccacgaagg      1380
     cgttcgactc agttgaaagg gcagcaatat ggcgatcact tgcaaggaaa ggagtacctg      1440
     cgaacctcat cgctatcatc aaatcgatgt atgacgatgc caacttggcg gtactgcaca      1500
     acggaaaaac aagtgaacct ttccagacga acaccggaat tcggcaagga tgccctctat      1560
     cactctctac tcttcaacat cgtggtcgac gagttaatga gcgaagtatg ctcgtccaag      1620
     cgcggaatta cgtggagcct caccagacac cttgaggact tggactatgc agacgacatc      1680
     tgtcttatct ctcatagact cggcgatata cagaggaaaa gtgatgacct cgtcaggata      1740
     gccagcagcg tcggactcga gataaacgta gcaaaaacaa aagctatgcg attcaaccac      1800
     tccaaccaag gaaacatcat catacatggg aacccaatcg agttcgtcaa cagtttccca      1860
     taccttggca ccataatatc caacaatggw ggagtggatg atgatgtctc gagtcgcctt      1920
     ggcaaagccc gctcagcttt tgggagacta taccgcattt ggaaaaacag agaaataagc      1980
     cggcgaacaa agctccggat ctacaatgcg tgtgtgaaat ccatactgct atacggaagt      2040
     gagacatggc tcgcaacgaa gaaagtaacg cagaaactgc aggttttcag caacaaatgc      2100
     ctgagaatca tatgtgggat attctggcca aacagaatag ccaacacaga gctgtggcgc      2160
     gttacgagcg agcccccgat acacacccaa ataaggaaga agaaatggat gtggataggg      2220
     cacgctctca ggagaaaccc tagtagcata gtaaggatgg cactggactg gaacccccaa      2280
     ggaagcagga gggtaggaag gccaagagca acatggagaa gaaccgctca acaagaactt      2340
     gcccaaataa acatcacatg ggaaaatgct aaacagacag cacaaaacag agttagatgg      2400
     aaggctctcg tagaagccct aagttcccga gagaaataag aaggaattaa aaaaaa          2456
//
ID   RTE-1B_LMi  repbase;    DNA;    INV; 1913 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 19.12, Created)
DT   02-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1B_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1913
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3462-3462 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(137..1063,1024..1893)
FT                 /product="RTE-1B_LMi_1p"
FT                 /translation="AGVLEAKCKSVEECIKGKSRYRLQENKRTFGTRKQLY
FT                 EYQELDGKPVLSKEGKAERWKEYIEQLYKGNELRDDVVGREEEVDQDEIGD
FT                 TILRDEFDRALKDLGRNKAPGVDDIPSELLKSLGEPAMTRLFELVCRMYET
FT                 GEIPSDFKKNVIIPIPKKSGADRCENYRTISLISHGCKILTRIIYRRMEKL
FT                 VEADLGEDQFGFRRNVGTREAILTLRLILEDRLRKGKPTFLAFVDLEKAFD
FT                 NVDWNTLFQILKSAGVKYRERRVIYNLYKSQTAVIRLEGHEREASVGKGVR
FT                 QGCSLSPMLFNLYMSRRPFSDVIQFVHEQAVKESKEKFGIGIKVQGEEIKT
FT                 LRFADDIVILSETAKDLEEQLNGMDSVLKRAYKMNINKSKTKIMECGLRKS
FT                 GDAEGIRLGNETMKVVDEFCYLGSKITCDGRSTEDIKCRMAMGRKAFLKKR
FT                 NLLTSNINLSVRKSFLKAFVWSVALYGSETWTISSADRKRIEAFEMWCYRR
FT                 MLKIRWVDRITNEEVLNRIGEKRNFWHTLTKRRDRLVGHILRHRGIVNLAL
FT                 EGSVWGKNRRGRPRDAYSKQIQVDVGCRSYEEMKRLAQDRVGWRAASNQSP
FT                 D"
XX
SQ   Sequence 1913 BP; 711 A; 263 C; 514 G; 425 T; 0 other;
     caaaatagtg aagcaagacc tacaaaaaat ccttggatat cacagaaatt taattagaaa        60
     atataaaaat gcagtatgaa ggcaaaatga gtacagacga ctaaaaatga gattgacagg       120
     aagtcaaaat ggctaagcag gagtgttaga agccaaatgc aaatctgtag aagaatgtat       180
     aaaggggaaa agtagatacc gcctacagga aaataaaaga acatttggga caagaaaaca       240
     gctctacgaa tatcaagaac tcgatgggaa accagttctc agcaaagaag ggaaagctga       300
     aaggtggaaa gagtacatag agcagctcta caaaggaaat gaacttagag acgatgttgt       360
     aggaagggaa gaggaagtag atcaagatga aataggagat actatactga gagatgaatt       420
     tgacagagcc ctgaaagacc taggtcggaa caaggcccca ggagtagatg acataccctc       480
     agagctacta aagtctctgg gagagccagc catgacaaga ctatttgaac tggtgtgtag       540
     gatgtatgag acaggcgaaa taccctcaga ctttaagaaa aatgtaataa tccccattcc       600
     aaagaaatca ggcgcagaca ggtgtgaaaa ttacagaacc atcagtttga taagtcatgg       660
     ttgcaaaatt ttaacacgaa ttatctacag gagaatggaa aagctggtag aagctgacct       720
     cggggaagat cagtttggat tcaggaggaa cgtaggaacc cgggaggcaa tactcacttt       780
     acgtcttatc ttagaagata gattaaggaa aggcaaacct acatttttag cttttgtaga       840
     tttggagaaa gcgtttgaca atgttgactg gaatacactg tttcaaattc tgaagtcagc       900
     aggggtaaaa tacagggaaa ggagagttat ttacaacttg tacaaaagcc agaccgcagt       960
     tattagactc gaagggcatg aaagggaagc atcagttggg aagggagtaa gacagggttg      1020
     tagcctttct ccgatgttat tcaatttgta catgagcagg cggtgaagga aagcaaggaa      1080
     aaatttggaa tagggattaa agttcagggg gaagaaataa aaacattgcg ttttgctgat      1140
     gacattgtaa ttctgtcaga gacagcaaag gacctggaag agcagttgaa tggaatggac      1200
     agtgtgttga agagagcgta taaaatgaac attaacaaga gcaaaacaaa aataatggaa      1260
     tgcggtctta gaaaatcagg cgatgctgaa ggaattagat taggtaacga aacaatgaag      1320
     gtggtagatg agttttgtta cttgggtagt aaaataacat gcgatggtcg cagtacagag      1380
     gatataaaat gcagaatggc aatgggaaga aaagcatttt tgaaaaagag aaatttgcta      1440
     acatcgaata ttaatttaag tgtaaggaag tcttttctga aggcatttgt gtggagtgtt      1500
     gccttgtacg ggagtgaaac atggacgata agcagtgcgg acaggaagag aatagaggct      1560
     tttgaaatgt ggtgctacag aagaatgctg aagattaggt gggtagatcg cataactaat      1620
     gaagaggtac tgaacagaat tggtgagaaa aggaattttt ggcataccct gactaaaaga      1680
     agggatcgct tggtaggaca cattcttaga catcggggaa tcgtaaattt agcattggag      1740
     ggaagtgtgt ggggtaaaaa tcgcagaggg agaccaagag acgcgtatag taagcagatt      1800
     caagtggatg tgggttgccg ttcttatgag gagatgaaaa ggcttgctca ggatagagta      1860
     gggtggagag ctgcatcaaa ccagtctccg gactgaagac cataacaaca aca             1913
//
ID   RTE-1B_PPo  repbase;    DNA;    INV; 99 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; REP-12_PPo;
KW   RTE-1B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-99
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3150-3150 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. It is dispersed but usually in
CC   tandem array; thus it is possibly a satellite family derived
CC   from RTE.
XX
SQ   Sequence 99 BP; 33 A; 10 C; 28 G; 28 T; 0 other;
     ggggaaagta ttattgtgtt gcagggatat gctagagaag gcgtgaattc agatattcag        60
     atagagatgt atgtaagagt acatactgta cactacgta                               99
//
ID   RTE-1C_DAn  repbase;    DNA;    INV; 3243 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1C_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3243
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 404-404 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~79% identical to RTE-1B_DAn.
XX
FH   Key           Location/Qualifiers
FT   CDS           243..3206
FT                 /product="RTE-1C_DAn_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MITETNTRNEENNHPPNPMTTIRIMKRTRIGQWNVRT
FT                 LMEPTRLAQFEGEMEKMQIAIAGISEMRWRGNGTTTTSTGNLVMHSGSNDG
FT                 GRNGVGIYVSKQFKQTLISWSPISDRIISARFRCNARHITIVQCYAPTEDA
FT                 SDDIKDDFYNALTSSLTRIGRGDVKILMGDFNAKIGPNNNGLETIMGKHGV
FT                 GSRSNNGDRLIDLCQTFQLVIGGTVFPHKEVHKYTWTSPNGHTRNQIDHIC
FT                 ISKKWRRSLMDVRNRRGASIDSDHELVVGELIIKLRRNHNTGTRNTRRPPP
FT                 LNLHRLGDSTLSTRMATTLREQLGPQQEEHSWELTCRILRSTAEEVLGTRQ
FT                 RRQVDWISTHTWDLINRRNSLKSRADHDCRVRGEYNELCKLVKKSARNDKR
FT                 KLLDRLAENAESAANANNMRALYQIIGQLSGKCQRQTHPVRDSTGKLLTEE
FT                 EAQIQRWRQHFMEISCTEQPSSIQEDSLSGMSSNNIRISPTAPSVREIKEA
FT                 IRKLKNNKAAGDDGISAELLQIDSQLMAETLHPHFTNIWESERIPASWKKG
FT                 IIVKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLQEKIETTLRDEQG
FT                 GFRPHRSCVDQANTLRAITEQAVEWRSPLYLLFIDFQKAFDSIDRAAIWRA
FT                 LARKGVPVKIISIIKAMYDDADLAVLHNGKISAPFQTNTGVKQGCPLSPLL
FT                 FNLVIDETMREVCRPRRGITWSFTRQLEDLDYADDICLLAHKFEDIQAKAN
FT                 DLETRANSVGLTINASKTKAMRINNSSQSNITIGGKTIDFVDSFNYLGCVI
FT                 AANGGVERDVDSRLSKARSAFGRLHRVWRNQQINRKTKLRIFNSCVKSILL
FT                 YGSETWLTTQRMLMKIQSFINKCLRIICGIFWPTRISNEDLWHCTGEVPIH
FT                 QQLKKRKWKWIGHALRKEPGSIVRMALEWNPQGSRRVGRPKMTWRRTALRE
FT                 LSLGRITWDTAKQTAPNRVRWKALVEALSSQEE"
XX
SQ   Sequence 3243 BP; 1129 A; 756 C; 759 G; 599 T; 0 other;
     gggggccccg tagcctagtg ggtagtgtaa ctgctcgcta agcgtggggt cgtgggttcg        60
     agccccactc atggaagctt ttcatgacct gcttatcttt cggcataata tgtttaatgg       120
     aatttttctg gtcccattac acataccatg ttggaaagac ggcattcccg gacgtcgtca       180
     gatggcagcc ccatctctgg gataggtcgc acccggctaa tcaccggatc gactgaaaat       240
     aaatgattac agaaacaaat acaagaaatg aagaaaataa ccaccccccc aacccgatga       300
     cgaccattcg cattatgaaa cggacacgaa ttggacaatg gaacgtgagg actttaatgg       360
     aaccaaccag actggcgcag tttgaaggag aaatggagaa aatgcagatc gcaattgcag       420
     gcatcagtga aatgagatgg agagggaatg ggacaacaac aacatcaact ggcaacctag       480
     tgatgcacag cgggagcaat gatggtggca ggaatggagt aggaatttac gtgtccaaac       540
     agttcaagca gacactaatc tcctggagcc caatatccga cagaatcatc agtgccagat       600
     tccgatgcaa tgctaggcac atcaccatcg tacagtgcta tgccccaaca gaagacgcca       660
     gcgatgacat caaagatgac ttctacaacg ccctcacatc ttcactcacc aggattggaa       720
     gaggagacgt caaaatactc atgggagact tcaacgcaaa aattggcccc aacaacaatg       780
     gactagaaac aataatggga aaacatggtg ttggctcacg cagcaacaac ggtgatagac       840
     ttatcgactt gtgccaaaca ttccaactgg tcattggtgg cactgtattt ccacacaagg       900
     aagtccataa atacacatgg acatctccaa atgggcatac acgcaaccaa attgaccaca       960
     tctgcataag taagaaatgg agacgctcac taatggatgt aagaaatagg agaggcgcgt      1020
     caatcgacag tgaccacgag ttggtagtcg gggagctcat catcaagctc agacgaaacc      1080
     acaacactgg caccaggaac acaagaagac cgcctcctct taacctacat cgacttggcg      1140
     actccactct atctaccaga atggcaacaa cgctacgtga gcaactaggg ccgcagcagg      1200
     aggagcactc atgggagttg acatgcagaa tactgagaag cacagcggag gaggtgcttg      1260
     gcacccgaca acgcagacaa gtggattgga tatcgacaca cacatgggac cttatcaaca      1320
     gacggaacag cctcaaatct agagcggatc acgactgcag agttcgaggt gaatacaacg      1380
     agctatgcaa gttggtgaaa aaatctgcta gaaatgataa gaggaaatta ctggacaggc      1440
     ttgctgaaaa cgcagaaagc gcagcaaacg caaacaatat gcgtgcactg taccagataa      1500
     ttggacaact atccggaaaa tgtcaaaggc aaacccatcc agtgcgagat tcaaccggaa      1560
     aactccttac agaagaggag gcacaaatcc aaagatggcg acaacacttc atggagatca      1620
     gctgcacaga acaaccaagc agcatacaag aagactcctt aagtggcatg tcaagcaata      1680
     acatcaggat atcacccacc gcaccatcag ttagagaaat caaggaagca atcaggaaac      1740
     ttaagaacaa caaggcggct ggagatgacg gcatatcggc cgagcttctc cagatagact      1800
     cgcaactaat ggccgaaaca ttgcatccac atttcaccaa catatgggaa agtgagcgaa      1860
     tcccagcatc ctggaaaaaa ggaatcatcg tcaagctacc gaagaaagga gacctcagcg      1920
     actgcaacaa ttggcgagga attaccctgt tgaacacaag ctacaaaata cttgccaccc      1980
     tattaaacga acgtcttcag gaaaaaatcg agacaacact gcgagatgag caaggaggat      2040
     tcagaccaca caggagttgc gtagatcagg caaacacact acgcgcaatt accgaacaag      2100
     ctgtggaatg gcgatcaccc ttgtatctcc tgttcatcga cttccaaaag gcattcgatt      2160
     caatagacag agcagcgata tggcgagcac ttgcaaggaa gggagtgcca gtgaagatca      2220
     tcagcataat aaaagctatg tacgatgatg cggatctggc cgtactgcac aatggaaaaa      2280
     taagtgcacc ctttcagaca aacactggag taaagcaagg atgcccccta tcaccacttc      2340
     tgttcaattt ggtaattgac gaaactatga gagaagtatg cagacccagg cgcggaatca      2400
     catggagctt cacccgacag cttgaagatc tggactacgc ggatgacatc tgccttctcg      2460
     ctcataaatt cgaagatatc caagctaaag caaatgacct cgagacccga gccaactcag      2520
     tcggactaac aatcaacgca tcaaaaacaa aggcgatgcg catcaataat tccagccaaa      2580
     gcaacataac cattggagga aaaactatcg atttcgtcga cagttttaac tacctgggat      2640
     gtgtcatagc agccaatggt ggagtggaaa gagatgtaga cagtcgactg agcaaagcaa      2700
     gatctgcatt tggaagactg caccgagtat ggagaaacca gcaaataaat agaaaaacaa      2760
     agctacgcat cttcaactcg tgtgttaaat ccatactact gtacggatcg gagacgtggc      2820
     tgaccacaca aagaatgctg atgaaaatac aatcattcat caataagtgc ctaagaataa      2880
     tatgtggtat attctggcct accagaatat ccaatgaaga cttgtggcac tgcacaggtg      2940
     aggtcccaat ccaccaacag ttaaagaaaa gaaaatggaa gtggattggc cacgcactca      3000
     gaaaggaacc aggaagtatc gtcaggatgg cgctagaatg gaacccacag ggaagtagaa      3060
     gagtgggacg ccccaagatg acctggcgcc gtacagcact ccgcgaactg tccttaggaa      3120
     gaattacatg ggacacagca aagcaaacag caccaaatag agtccggtgg aaagcccttg      3180
     tagaagccct aagctcccag gaggagtaaa taaggaaaaa aaaaaaaaaa aaaaaaaaaa      3240
     aaa                                                                    3243
//
ID   RTE-1C_LMi  repbase;    DNA;    INV; 1441 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 19.12, Created)
DT   02-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1C_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1441
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3390-3390 (2014).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
SQ   Sequence 1441 BP; 464 A; 250 C; 330 G; 394 T; 3 other;
     gagatgaatt tgaaggcctt gaaagaccta ggtcggaaca aggccccagg agtagatgac        60
     ataccgtcag agctactaaa gtctctggga gagccagcca tgacaagact atttgaactg       120
     gtgtgtagga tgtatgagac aggcgaaata ccctcagact ttaagaaaaa tgtaataatc       180
     cccattccaa agaaatcagg cgcagacagg tgtgaaaatt acagaaccat cagtttgata       240
     agtcatggtt gcaaaatttt aacacgaatt atctacagga gaatggaaaa gctggtagaa       300
     gctgacctcg gggaagatca gtttggattc aggaggaacg taggaacccg ggaggcaata       360
     ctcactttac gtcttatctt agaagataga ttaaggaaag gcaaacctac atttttagct       420
     tttgtagatt tggagaaagc gtttgacaat gttgactgga atacactctt tcaaattctg       480
     aagtcagcag gggtaaaata taaacattct atgattttta atacgggttg tacatagctt       540
     gattgtaact ttgtcattca ctataagtcc atgtaccttc tgaagaatta tatcaatcga       600
     aatcgcggta aagtttacta aactttaatt tgcaactggt tggctgctcg ggcgctgatg       660
     aactcaatgt tgagtgccct aaaacatcaa tcatcatcat tatctggttg gctgttaatt       720
     ctattgcgac gtatttactt gtgaaaacga cagaattgta ctcagctcaa tttccaaaac       780
     tcttctctag ttctaactac atttaccctt gcagtaatgt atagcaaaaa aacacataaa       840
     aatgcgaaaa gtttcgttga aagatacgat gtggtagtct tgtacacctc caagtctttt       900
     taaactacga aaattggaga actgggttta ctcttatctg agagtacacg atcgggcatt       960
     tcgagtaaag gatgctccaa cgagcacgag gaaaatcagt tatcgttatg aagaggagat      1020
     cggtgcgaaa tagtgagaac caataggact ggtatatctt tgactcgatg caccagatgc      1080
     cgttgttaat tctggcataa tatgttaact gttttgtgtt aaggttgcac agtgccgttt      1140
     caaagcggca gtgcactgat aatgtgtcac aaggagatgt gccttattat tacatatcaa      1200
     actgtgatgg agcaataata tgttctaata cattcaatca taaactctta aaatgcgcat      1260
     cgtckgkgkg gaagtgtgtg gggtaaaaat cgcagaggga gaccaagaga cgcgtatagt      1320
     aagcagattc aagtggatgt gggttgccgt tcttatgagg agatgaaaag gcttgctcag      1380
     gatagagtag ggtggagagc tgcatcaaac cagtctccgg actgaagacc ataacaacaa      1440
     c                                                                      1441
//
ID   RTE-1_AG    repbase;    DNA;    INV; 3314 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   29-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   RTE-1_AG is a RTE-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; endonuclease; RTE clade; AGRP1; RTE-1_AG;
KW   Ag-JAMMIN-2.
XX
NM   RTE-1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1522-2432
RA   Reiss A.R.;
RT   "A study of repetitive DNA elements in the malaria vector,
RT   Anopheles gambiae.";
RL   Thesis (1991).
XX
RN   [2]
RP   1522-2432
RA   Reiss A.R., MacIntyre J.R. and Hagedorn H.H.;
RT   "A repetitive element of the Malaria vector, Anopheles gambiae.";
RL   Unpublished (1993).
XX
RN   [3]
RP   1-3314
RA   Kapitonov V.V. and Jurka J.;
RT   "RTE-1_AG, a family of RTE-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 24-23 (2002).
XX
RN   [4]
RP   1-3314
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
DR   [3] (Consensus)
XX
CC   RTE-1_AG is a family of RTE-like non-LTR retrotransposons.
CC   The RTE-1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   RTE-1_AG occurred less than 1 million years ago. The
CC   RTE-1_AG family is composed of several subfamilies.
CC   The consensus sequence encodes a 972-aa RTE-1_AGp protein
CC   (positions 373 3288), which is composed of the AP endonuclease
CC   and reverse transcriptase domains. The 3' terminus is composed
CC   of the TAAG microsatellite.
CC   This is the same element as Ag-JAMMIN-2 in [4].
XX
FH   Key           Location/Qualifiers
FT   CDS           373..3288
FT                 /product="RTE-1_AGp"
FT                 /translation="MGSWNVRTLSEAGALKKLDDALATLSMDLVALQEIRW
FT                 LGNGVHNRRGKHCYDIYYSCHDRHRVLGTGFAVGPRLKPAIMDFKAINDRL
FT                 CTLRMRGKFFNISLINVHAPTEDKEEEEKDLFYGRLARIVDACPRHDLIII
FT                 LGDFNAKVGREPMYRQYTGCHSLHEHSNDNGSRLVQFAAANNLVVGSTKFA
FT                 RKKIHKITWAHPGGESFNQIDHVLISRRRQSSLLNVRTYRGANIDSDHYLV
FT                 GLVIRCRIARPRANGGGENTQARLNTDSLRDIAVQQEFKTALEESLLPEDR
FT                 YETTSERWNALKTKIINCARNILPPRRGNTKSGWFDDECRQVTERKNTAYR
FT                 AMQQRHRTRACAEEYSRLRREEKRVHRSKKHALEEQNMRELEQTREAYGPT
FT                 RKFYQAIAGHRNNVVPKVTCCRNKDGDLVSNQPEVLSRWAQYFDELLNDQF
FT                 SEQLEAPLADNVMLLPPSIEETRKAIRRLKNNKAPGTDGIAAELVKNGGAR
FT                 LENEIHQIVTEVWDSESMPCDWNLGIIYPIYKKGDRLDCNNYRGITVLNTA
FT                 YKIFSLILQDRLVPHVEEIVGNYQRGFRNGKSTTDQIFTMRQILEKMAEYK
FT                 NDTYHLFIDFKAAYDSIARVKLYDAMSSFGIPAKLIRLVRMTMTNVTCQVR
FT                 VDGKLSGPFATTKGLRQGDGLACLLFNLALERAIRDSRVETTGTIFYKSTQ
FT                 ILAYADDIDIIGLRLSYVAEAYQGIEQAAENLGLQINEAKTKLMVATSADL
FT                 PINNPNLRRRDVQIGERTFEVVPEFTYLGSKVSNDNSMEVELRARMLAANR
FT                 SFYSLKKQFTSKNLSRRTKLGLYSTYIVPVLTYASETWTLSKSDEALLAAF
FT                 ERKMLRRILGPVCVEGQWRSRYNDELYEMYGDLTVVQRIKLARLRWAGHVV
FT                 RMETDDPARKVFLGRPQGQRRRGRPKLRWQDGVEASAIKAGITDWQTKARD
FT                 RERFRTLLRQAKTAKRL"
XX
SQ   Sequence 3314 BP; 968 A; 825 C; 878 G; 643 T; 0 other;
     tgctctgtaa tgggatggga tccgaagccc cattgaggga taatacaggc tctcccatcc        60
     aactcctatt ccgacacgtc ctcgtcgtgc agagtggtaa catgtgtcac cacatatcca       120
     agcttgggta cacgggcttg acccaacccc ttgggcggat ggtggcatat ggcgaaccag       180
     gaggggggtg ggtatcccgg gaaactgggt gcctgaacgt cgggggggca acccgacgct       240
     aaacaaaacg gtcacgtggg cgcggggcca gtcacccagt cccatgaatc aacgactacg       300
     gaaagcacca gaaattttcg aaacggacct aacgataccg accctacgca atgcccccgg       360
     actactctaa aaatgggctc atggaacgta cgcactctaa gcgaagccgg agccttgaaa       420
     aaacttgatg atgccctagc cacactgagc atggacctcg tagctctaca agagattcgg       480
     tggctaggga acggtgtgca caacaggcgt ggtaagcatt gctacgacat atactacagc       540
     tgccacgacc gccaccgcgt gctcggaacg ggtttcgccg taggtccccg gttgaaaccc       600
     gcaatcatgg atttcaaggc tataaacgat aggctatgca ccctgcgcat gcgaggcaaa       660
     ttctttaata taagcctcat aaacgttcac gcccctaccg aagataaaga ggaagaggag       720
     aaggaccttt tttacggccg cctcgctaga attgtagatg cgtgccccag gcatgacctc       780
     ataatcatcc tgggggactt caacgcaaaa gtcggtaggg agccaatgta ccgccaatac       840
     actggctgtc acagtctgca tgagcacagt aacgataatg gtagtagatt ggtccagttc       900
     gccgcagcga acaatctggt tgtaggaagt accaaatttg cgcgcaagaa aatccacaag       960
     attacgtggg cgcacccggg tggagaatcc ttcaaccaga tcgaccacgt gttaataagc      1020
     cgccgacgac agtcgagtct gttaaatgtc agaacatatc gaggagccaa tatcgattcc      1080
     gatcactact tggttggctt agtgatacgt tgtagaatcg cccgcccccg cgccaatggg      1140
     ggcggagaaa acacgcaggc tcggctcaac acggactctc taagggacat tgctgtccaa      1200
     caggaattca aaaccgcttt agaagagtct ctactaccag aagacagata cgaaactacg      1260
     agcgagaggt ggaacgctct aaaaacaaaa ataataaact gtgcaagaaa tatactccca      1320
     ccacgtcgtg gcaacaccaa atctggctgg ttcgacgatg aatgcagaca agtgaccgaa      1380
     cgtaagaata ctgcataccg agcaatgcag caacggcata gaacgcgggc atgcgcagag      1440
     gaatattcac ggcttagacg cgaagagaaa cgagttcacc gctccaagaa gcatgctttg      1500
     gaagagcaaa acatgcggga actcgagcaa accagagagg cgtacggacc gacacgaaag      1560
     ttttaccaag cgatagcagg tcaccgaaac aacgttgtac ctaaggtaac ctgctgtcgc      1620
     aacaaggatg gagatctggt cagtaaccag ccagaggtcc tctcgcggtg ggctcagtac      1680
     tttgatgaat tactcaatga ccagtttagc gaacagctag aagcgccact agcagataat      1740
     gtcatgctac tgccacctag catagaagaa acacgaaagg ctatccgtcg gctgaaaaat      1800
     aacaaggcac ccggaaccga cggaattgca gccgaactgg tcaagaatgg aggtgcacga      1860
     ctagaaaacg agattcatca aattgttact gaggtgtggg atagcgaatc gatgccttgt      1920
     gattggaatc tcggcatcat ctaccccata tacaagaagg gagacaggtt ggactgcaac      1980
     aactacaggg gtattacggt gttgaatacc gcctataaaa tattctccct gatccttcag      2040
     gatcgccttg tcccgcacgt cgaagagata gtaggaaact atcaaagagg attccgaaac      2100
     ggaaaatcaa ccactgatca gatcttcacc atgcggcaga tcttggagaa gatggctgaa      2160
     tacaaaaacg acacatacca tctcttcata gacttcaaag ccgcatacga tagcatagcc      2220
     agggtaaaac tgtacgacgc tatgagctca tttggaatcc cggccaaact gataaggcta      2280
     gttagaatga ctatgaccaa cgtcacatgc caggtgaggg tggatggaaa actctcagga      2340
     ccttttgcta ccaccaaggg tctgcgccag ggggacgggc ttgcctgtct cctattcaac      2400
     ttggcgctag agagggccat ccgcgactcg agggtggaga ctacgggaac catcttctat      2460
     aagtcaaccc agatcctggc atacgctgat gatatagaca tcattggtct gcggctctcc      2520
     tatgtagcag aagcctacca agggattgag caggcggcag agaacctcgg attgcagata      2580
     aacgaggcaa agaccaaact gatggtggca acatcagcgg acctaccaat aaataatcca      2640
     aatctacgta ggcgtgatgt acagataggt gaacgcactt ttgaagtcgt cccagaattc      2700
     acctatcttg ggtcaaaggt cagcaacgac aacagtatgg aagttgagtt gcgcgcaagg      2760
     atgctggctg ccaaccggtc attctacagc ctgaaaaagc agttcacctc aaagaacctg      2820
     tcgcgacgga cgaagctggg actatatagt acctatatag taccagtact cacatacgcc      2880
     tctgagacat ggacactgtc caaatctgac gaagccctct tagccgcgtt cgagaggaag      2940
     atgctcagaa ggatacttgg ccccgtatgt gtggaaggac aatggaggag ccgctataat      3000
     gacgagctat acgagatgta cggcgacctc actgtcgtac agcgtattaa gctcgccagg      3060
     ctccggtggg ctggccatgt tgtacgcatg gaaacggacg acccagcccg taaagtcttt      3120
     ttaggccgtc cacaaggaca gaggaggcgt ggtaggccca aattgaggtg gcaagatggc      3180
     gtggaggcgt ccgccattaa ggccgggata acggactggc agacgaaggc gcgagaccgt      3240
     gagcggtttc ggacactcct gaggcaggcc aagaccgcaa agcggttgta gcgccggata      3300
     agtaagtaag taag                                                        3314
//
ID   RTE-1_BM    repbase;    DNA;    INV; 2359 BP.
XX
AC   .
XX
DT   26-APR-2010 (Rel. 15.07, Created)
DT   26-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2359
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1053-1053 (2010).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(128..592,623..2248)
FT                 /product="RTE-1_BM_1p"
FT                 /translation="TPHSKCSNRVQTNIGNAQTPTLDDRWYLALIEERRRK
FT                 KAQGIDTNKLNVLSANIQASCRRDHNSHLRNICEEVEKHATKHESRDLYHK
FT                 IRFITKSLPSKTWAIVNDKNELITELDQISETWKSYCQSLFQDPQSRQFTS
FT                 TDPNDENIRYIKMSRLLQLKILTETWKSYCQSLFQDPQSRQFTSTDPNDED
FT                 LEPSILLSEVRAAIKHLKNGKATGRDAIPIETIKALGERGDDMFHKICNRV
FT                 WQTGVWPSEWAHTVFTPLHKKGSTKKCNNYRLIALTSHSSKIMLRILNERL
FT                 KTYLSKEIAPEQAGFVRGKGTREQIFIVRQIIEKAREFNRPTYICFVDFSK
FT                 AFDSVKWPVLWKTLLDLGTPKHLVHLLRRLYENGTASVRADDVLSGNFHPS
FT                 AGVRQGCIVSPLLFNAYTEIIMRITLENWTDGVAIGGYRIANLRYADDTTL
FT                 FATDAQCLGELLSRMERVSLEFGLRINRSKTKVMIVDRAMNNSPDVTQIAG
FT                 CDVVQSYIYLGALISNNGGCVDEIRRRMAVTRSAMDGLRKVWRNRNITKTT
FT                 KIRLVRTLIFSIFLYAAETWTVRDVERKKIDALEMWCWRRMLGVSWTDFRT
FT                 NVSILQELGIKQRLFGIVQSRMVNFFGHVSRRDGRSIERLVVQGSVDGTRP
FT                 RGRPPMRWTDQIKTAVGGPLNECSRMASSRERWRDIVRRIKSAPSNTT"
XX
SQ   Sequence 2359 BP; 742 A; 482 C; 590 G; 545 T; 0 other;
     gagcgcaaag gaggatcgaa gtaacagata gggcaaagtt tactgcggcg ttcgaacgga        60
     aatggacaga gtggactgac gttaatcaca atgaggctac accggaaatg ttatggagca       120
     aggctaaaca cctcattcaa aatgcagtaa tagagtccaa accaatatcg gaaatgcgca       180
     aacgccaaca ctggatgacc gatggtacct cgccctaatt gaagagagac gtcgaaagaa       240
     agctcaaggc atagacacga acaaactgaa tgtattgtct gccaatattc aggccagctg       300
     cagacgagat cataactctc atcttcgtaa catttgtgaa gaggtcgaaa aacatgctac       360
     gaagcatgaa tctagagatc tctaccacaa aatacggttc attaccaaat cactgccatc       420
     taagacctgg gctattgtaa atgacaaaaa cgaactgata acagagttgg atcaaatctc       480
     tgaaacatgg aagagctact gtcaatcgtt attccaggat ccacagtcac ggcaatttac       540
     aagtacagac ccaaacgatg agaatataag atacataaaa atgagccgct tatgattgcg       600
     atacaataat tattagaaat aattgcaatt gaagatttta actgaaacat ggaagagtta       660
     ctgtcaatcg ttattccagg atccacagtc acggcaattt acaagtacag acccaaacga       720
     tgaggacttg gagccgagca ttctcctgtc tgaggttagg gctgctataa aacacctcaa       780
     aaacgggaaa gcgactggta gagacgcaat tcctattgaa acgataaaag ccttaggaga       840
     acgcggcgac gacatgtttc ataagatatg caacagggta tggcagacgg gagtttggcc       900
     gtcggaatgg gcacataccg tgtttactcc cctgcataaa aagggctcta cgaagaaatg       960
     taacaactat cgtctaattg ctcttacatc acattctagc aaaattatgt tacgtattct      1020
     gaacgagcga ttaaaaacct atctgtccaa agagattgct ccggaacagg ccggtttcgt      1080
     gagggggaaa ggcactcggg aacaaatttt catcgtacgt cagataattg agaaagcaag      1140
     agaattcaac aggccgacat acatttgttt tgttgacttc tccaaagcgt ttgactcggt      1200
     gaaatggcct gttttgtgga agaccttact ggatctgggg acaccgaaac atcttgtgca      1260
     cctactgaga cgcttatatg agaatggtac ggcctcggtg cgcgcggatg acgttctctc      1320
     tggtaacttc catccaagtg ctggggttcg ccaaggttgc attgtatcgc cgctcttatt      1380
     caatgcgtac acagagatca taatgcgcat cactttggag aactggacag atggtgtagc      1440
     aattgggggg tataggattg caaacttgcg atacgcggat gataccactt tgtttgcaac      1500
     tgatgcgcaa tgcttggggg agttactgtc gaggatggaa cgtgtgagcc ttgagtttgg      1560
     attaaggatt aaccgcagta agaccaaggt gatgattgtc gatcgcgcta tgaataactc      1620
     gccggacgtg actcaaatag cgggttgcga cgtggtccag tcctacatat accttggggc      1680
     gttaatctca aataatggcg gatgcgtgga cgaaatcaga aggcgcatgg ctgtcacgag      1740
     gtcggcgatg gacgggctga ggaaagtatg gagaaataga aacataacca aaaccacaaa      1800
     gatcaggctc gttagaacac taatattctc tatatttcta tacgctgctg agacgtggac      1860
     cgtgcgagac gtggaaagga agaaaataga cgctctggaa atgtggtgct ggagaagaat      1920
     gcttggagtt tcgtggaccg actttcgtac aaatgtctcg atacttcagg aactcggcat      1980
     caagcagcgt ctatttggta tagtacagtc tcgaatggtg aatttcttcg gacacgtttc      2040
     gcgacgagat ggccggtcca tagaacgcct cgttgtacag ggaagcgttg atggtacaag      2100
     accgcgcggg aggccaccaa tgcggtggac cgaccaaatt aaaactgcag tgggaggtcc      2160
     cctaaatgag tgcagtagaa tggcctcgag cagggagaga tggcgcgaca tcgtgagacg      2220
     catcaagtct gccccttcca acactacatg acgatcacga ccactctgtc aagagtgaca      2280
     cgactgagaa gaagaagatt tagaatatag tgaaaactaa ttgctttgat aataaattaa      2340
     taaagacaaa caatatata                                                   2359
//
ID   RTE-1_BTa   repbase;    DNA;    INV; 3231 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3231
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 951-951 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           104..3208
FT                 /product="RTE-1_BTa_1p"
FT                 /translation="MNHPLEGQTGLSAVVEATCLGEETPKSNPGPPGWGLS
FT                 HRANSPILGKRNTVKRPNNNCLGTNGNKRIYRKKLRKRMMVFGTWNVQGIS
FT                 TKMTEVVSEIGSHGFDVTVLTETKKKGQGSVSVKEYDLFYSGVEKDQRAQQ
FT                 GVAILIRKSLRKCITTWEAVNPRMIKMNMTVFGHKITILGVYGVNDDSTVA
FT                 VKDQFFEELNEEIGKIGSRREIIVLGDLNGRIGRQIKSKIVGPFGEAALND
FT                 NGARIIDVCEQRDMKVLNGFYQHKDIHKFTWVQSTRGLKSIIDYVVVRQDT
FT                 GMKIQQVRVWRGLSCGSDHYFLGAKIAFPVKGSQETRQAQEEVHQQKDRVK
FT                 LVNYNIDSLQHPSVRALYGKRLDEKLGESRDGDTEQQYQFLKDCIHSAAME
FT                 ALGVADDRKVSEKPYWWDEEIEKEIQEKRKKYHQFLSSKKTEDKEAYKKAQ
FT                 TQVRRLITKKKNESWERSCNKIDTYIGGRKSTESWKLLKGLRRDMKRDLIS
FT                 PISIDKLEGYFKNLLTERRPEFQDGGVSLEYTNDNHNLEIHMEDVVKAVRE
FT                 LKNDKAPGPGNIPAELIKCGTCKLFQRLRYLMQDCLDGGKVPTEWKESWVS
FT                 PIYKKKGRKDECDNYRGLSVAGTLSKVYGKILKAKIEEEWKEHEAEEQAGF
FT                 RAGRSTIDHLFTIIHVIEKKKGVGQELHLVFVDLQKAYDSVPLMKLWEALN
FT                 KRGFSGGLISAIKEFYGGAFSRVKSHGELSLGFLITKGLKQGCCLSPTLFK
FT                 VYLEEVLKEWKRCFSGMGVPLREDGTLYTLCFADDQVVIAQDEEDANYMTR
FT                 KLVEVYRKWGMEVNVVKTEKLVIGGDQQSIELEDGRKILDCEEYKYLGVRL
FT                 TKDGNLDRAIKDRNVQGRKAIAMLNGVLWDQSISKETKRKIYNVIVKSIVT
FT                 YGSEVWQLKKRTEDMLRATEMDFWRRSAGISRRERIRNERVREIMGVEKDI
FT                 VHDIRSKQLVWYGHVRRMADDRLPKQVFDWVPPGRRRRGRPVKGWRQGVEE
FT                 EIRRCQLPDDLWEDRGQWRLGVAEREAAL"
XX
SQ   Sequence 3231 BP; 1014 A; 541 C; 940 G; 736 T; 0 other;
     gcccgtatgg gggactgatg tcacaggttt agcaatcctg cggaccccag ctggtaaccc        60
     ctgcctcatg gggtagtgga gatggtcacc ggcttcaagg cgtatgaacc acccattgga       120
     agggcagaca gggctctcag ctgtagtgga agcaacctgt ctaggagagg aaactccgaa       180
     atcaaacccc ggtcctccag gttgggggtt gagtcatcgg gctaactccc cgatactcgg       240
     aaaaaggaat actgttaaaa gacccaataa caattgcctc ggtacaaatg gaaataaacg       300
     gatttatcgg aaaaaattac gtaaacggat gatggttttt ggaacatgga acgtacaagg       360
     aatttctacg aaaatgacgg aagtggtatc ggagataggg agtcacggat ttgatgtcac       420
     ggtattaaca gaaacgaaga agaaaggaca aggctctgta agtgtaaagg aatacgattt       480
     gttttatagt ggcgtggaaa aagatcagcg agctcaacag ggtgttgcaa ttcttattcg       540
     caagagccta cggaagtgca tcactacatg ggaagctgtt aacccccgaa tgataaagat       600
     gaatatgaca gtgtttggcc ataaaatcac cattttggga gtgtatggag tcaacgatga       660
     ttccactgtc gcagtgaagg accaattttt cgaagaattg aacgaggaaa ttggtaagat       720
     tggatccagg agggaaatca ttgtgttggg agatctcaat ggtagaatag gacgtcaaat       780
     taaaagtaag atcgtcggcc ctttcggaga ggcggcacta aatgataacg gagcccgtat       840
     cattgacgta tgtgagcaaa gggacatgaa ggtgctcaat gggttctacc aacacaagga       900
     tatccataaa tttacttggg ttcagtctac tcgcggattg aaatcaatca ttgattatgt       960
     ggttgtcaga caagacacgg gaatgaagat tcagcaagtt agagtgtgga gaggtctttc      1020
     ctgcggcagt gatcattatt tcctcggggc aaaaatagct ttcccagtga aagggagcca      1080
     ggagaccagg caagcacagg aagaagttca ccaacaaaaa gatcgtgtca agcttgtaaa      1140
     ctataacatt gacagcttgc agcatccaag tgtaagggct ttatatggaa agcgcttgga      1200
     tgagaagttg ggcgaatcaa gggacggtga taccgaacag cagtatcagt tcctgaagga      1260
     ttgcattcac tcggcagcaa tggaagctct tggtgtcgct gatgatagga aagttagcga      1320
     aaaaccttac tggtgggacg aagaaattga gaaggagatt caggagaaac ggaaaaaata      1380
     tcatcagttc ctttcctcta aaaaaacaga agacaaagag gcgtataaaa aagctcagac      1440
     gcaggtacga aggctcataa ccaagaaaaa gaacgaatct tgggagagga gctgtaacaa      1500
     aatagacacg tacataggag gaaggaaaag cactgagagc tggaagttgc tgaaagggct      1560
     gcgaagggac atgaagcgtg acttaatatc tccgatatcc attgataaac tggaggggta      1620
     ttttaaaaat ttactgacag aaaggcgacc tgaatttcaa gatggaggcg taagcttgga      1680
     gtatactaac gataatcata acttggagat ccatatggag gacgtggtaa aggccgtacg      1740
     agagctgaag aacgataaag ctccaggtcc gggaaatatc cctgctgagt tgatcaagtg      1800
     tggaacctgc aagctgtttc aacggttgag atacctgatg caagattgct tggacggtgg      1860
     aaaggtaccg acagaatgga aagagtcttg ggtgtcacct atatacaaga agaagggtag      1920
     aaaagatgag tgtgataact atagaggact gtcggttgca ggtaccctga gcaaagtgta      1980
     tggaaaaatc ttgaaagcaa aaattgaaga ggagtggaaa gaacatgaag cggaagagca      2040
     agcaggtttc agagccggtc ggtcaacgat tgatcactta tttaccatca tccacgtcat      2100
     agagaaaaag aagggagttg gccaggaatt acatctagtg tttgtggatc tccagaaagc      2160
     ttacgatagt gtgccattga tgaaactttg ggaagccttg aacaaaaggg gttttagtgg      2220
     gggactaatt agtgctatta aggaatttta tggtggggct ttctctaggg ttaaatcgca      2280
     tggggagtta tcgttggggt ttttaattac taaaggactg aaacaagggt gttgtttgtc      2340
     gccaacctta tttaaagtgt acctggaaga agttttaaag gaatggaaaa gatgcttttc      2400
     gggaatgggc gtcccgctac gtgaagatgg caccctttat actctgtgct ttgctgatga      2460
     tcaggtggta atagctcagg acgaagaaga tgcgaattac atgacgcgga agctagtgga      2520
     agtataccga aagtggggaa tggaagtaaa tgtggttaag acggagaagt tggttatcgg      2580
     tggtgatcag caaagcattg aactggagga tggccggaag atcctggact gtgaagagta      2640
     taaatatctc ggagttcggt taactaagga cggaaatttg gatcgggcca ttaaagatcg      2700
     gaatgtgcaa ggcaggaaag ctatcgcgat gctaaatggg gttctctggg accagagtat      2760
     ctccaaggag accaaaagga aaatttacaa cgtcatcgtg aagagtatcg taacttacgg      2820
     gagtgaggtc tggcaactta agaaaagaac tgaagacatg cttagggcaa ccgagatgga      2880
     cttttggcga aggtctgctg ggatatcgag aagagagcgt atccgcaatg aaagggtacg      2940
     cgagataatg ggtgtggaaa aggacatcgt gcacgatatc aggtccaagc agttggtctg      3000
     gtatggacat gtgcgaagga tggcagatga tcggttgccc aagcaggtct tcgattgggt      3060
     tcctcccgga aggcgacggc gtggacgtcc tgtgaaaggt tggcgacaag gggtggagga      3120
     ggagatcaga aggtgccaat tgcctgatga tctctgggag gatagggggc aatggcgatt      3180
     gggcgtcgca gagcgcgagg cggcgctata atcgcgactt tatgtatgta t               3231
//
ID   RTE-1_CQ    repbase;    DNA;    INV; 3052 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3052
RA   Kojima K.K. and Jurka J.;
RT   "RTE non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 611-611 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           25..3039
FT                 /product="RTE-1_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEPESGLRATETARRKTDWRNGTTLGMKTRTRIGTWN
FT                 VLTLAQAGKLETLGREAVRLKLEILGLSEVRWPDSAEHKMPTGQVLLYSGL
FT                 RSENAQRGFLLSPNARSALITWKPINERIIVARFRTRVRNLTFVQVYAPTD
FT                 AADLQEKEEFYSQLSXVVNEIPKGDIRIYAGDFNAKIGSDNTDLERIMGPH
FT                 GXGEMSENGELFTEFCGNQDMVIGGSLFPHRSVHKVTWVSRDGKTENQIDH
FT                 ICISRKWRRSLLDVRNMRSADIASDHHLVVGEIRLRVARVVRQEEKVGCRF
FT                 NVQRLSNPEVXRAFVGELQARALEIPDSTVEEEWQFIKDAFAVTGENTLGM
FT                 LRTQRKEWISDATWDKIEERKQAKAAIVSARTRATKARTRQTYAELEKAVK
FT                 RSCRRDKRAWTDSLADEGEKAANNGDMRLLYDISRRLCGARTNTRIPVKDR
FT                 SGQLITDPADQLKRWFEHFEQLLQISHPRPSPQYHPQNVRRINRVNSSPPT
FT                 LREIEEAVKGMKSGKAPGIDRISAEMLKADAHLSARMLHRLFSKIWDTATF
FT                 PVDWMQGILVKVPKKGDLTNCDNWRGITLLCIALKVLCKVILCRIKSKIDE
FT                 SLRRQQAGFRSGRSCVDHIVTLRVILEQVNEFQDSLHLVFVDYEKAFDRLD
FT                 HENLWEALGRKGVPERIINLIKAQYEAFVCRVVHNGVLSDPIRVVAGVRQG
FT                 CILSPLLFLIVIDEVLAGALDRVQNRGLLWQPIRMEHLNDLDFADDIVLFS
FT                 QRGNDMQNKLDDLAACSSAAGLKVNVSKTKSMAVNTERAQGFTVAGENVEK
FT                 VDTFQYLGSQIAPDGGTKLDISTRIKKARSAFAGLRTLWRSNQISLRTKLR
FT                 IFNSNVKSVLLYGSETWCVSSQNTSKLQVFVNRCLRNILRAWWPRNWVSNA
FT                 ELHRRCQQRPIHVEIRERKWRWIGHTLRKDAHEICREALDWNPQGQRGRGR
FT                 PRGSWRRSLHQEISAVDGTLSWRQVKAKAENRQQWKSFNAALCSTGEQXA"
XX
SQ   Sequence 3052 BP; 779 A; 753 C; 908 G; 605 T; 7 other;
     tagggctcct taggctagcc acttatggag cccgaaagtg gactgagggc tactgaaacc        60
     gcaagaagga aaacagactg gaggaatgga acaacccttg gcatgaaaac acggacacga       120
     atcggaacat ggaatgtact gacgcttgcc caggcgggta agttggaaac gctagggagg       180
     gaggcagttc ggctsaagct agaaatcttg ggtctgagcg aagtccgttg gccggactca       240
     gcagagcaca agatgcctac cgggcaggtt ctgctgtact ctggcttgcg aagcgaaaac       300
     gctcaacgtg gcttcctgtt gagcccaaat gcacgttcgg cgctcattac gtggaagcca       360
     ataaacgagc ggataatcgt ggctagattc aggacgcggg tcagaaacct gaccttcgtt       420
     caagtttacg cgccgacgga tgctgccgac ttgcaggaaa aggaggagtt ttacagtcaa       480
     ctgagcgkag ttgtcaacga gatccckaag ggtgacatcc gaatctacgc aggcgacttc       540
     aacgcgaaga taggctctga caacacagac ctggagcgca tcatggggcc ccatggtcwt       600
     ggagaaatga gcgagaacgg tgagctgttt acagagttct gtggtaacca agacatggtg       660
     attgggggat cgctctttcc ccatcgctca gtgcacaaag tcacgtgggt gtcacgtgat       720
     ggaaaaacgg agaatcagat cgaccacatc tgcatcagcc gcaagtggag aagaagcctg       780
     cttgatgtgc ggaatatgcg cagcgccgac attgcatccg accaccacct cgttgtcggc       840
     gaaatacgac tacgggtagc gcgtgtcgta cggcaagagg agaaagtcgg ttgtaggttc       900
     aacgtgcaac gtctgtcgaa tcccgaagta sscagggctt ttgtcggcga gctccaagcc       960
     cgagccttgg agattccgga cagcactgtt gaagaggagt ggcagttcat caaggacgcc      1020
     ttcgctgtta ccggcgagaa tactctggga atgctgcgaa ctcagaggaa ggagtggatt      1080
     tcggatgcca cctgggataa gatagaggag aggaagcagg ctaaggctgc cattgttagc      1140
     gcaaggacga gagcgacgaa ggcacgtacc cgccaaacgt acgccgaact ggaaaaggct      1200
     gttaagcgct cttgcaggcg ggacaagaga gcctggacgg attccctcgc cgacgaggga      1260
     gagaaagctg ctaacaatgg cgacatgcgc ctcctctacg acatttcgcg acgtttgtgt      1320
     ggtgccagga cgaatacgcg cattccggtg aaagacagga gcggtcagct gattaccgat      1380
     ccagctgatc agcttaaacg atggttcgag cattttgagc agctgctaca aatctcgcat      1440
     ccacgtccaa gccctcagta ccatccgcaa aatgttaggc ggatcaaccg ggtgaactca      1500
     agtccaccta cgctgaggga gattgaggaa gccgtgaaag gtatgaagtc tggaaaagcg      1560
     ccagggatag atcggatctc cgcagaaatg ctcaaagctg acgctcattt gtcagctcgg      1620
     atgctgcatc ggcttttcag caaaatctgg gacaccgcga cttttccggt cgactggatg      1680
     cagggcattt tggtgaaggt tcccaaaaag ggtgacctca ccaactgcga caactggcgt      1740
     ggcatcacgc tgctgtgcat agctctgaag gtcctatgca aagtgatctt gtgcaggatc      1800
     aaatcgaaga tcgacgagtc tcttcgacgg cagcaagcag ggttccgcag tggccgatca      1860
     tgcgtggatc acattgtgac actccgtgtc atcctcgaac aggtcaacga attccaggat      1920
     tctctccatc tggtcttcgt tgattatgaa aaagcgtttg accgtctcga ccacgaaaac      1980
     ctgtgggaag cccttgggcg caagggagtc ccagagagga tcatcaacct catcaaggca      2040
     cagtacgagg ctttcgtttg ccgtgttgtg cataacggag tcttgtcgga cccaatccgg      2100
     gtggtagctg gggtgaggca aggatgcatc ctgtcgccgt tactgttcct catcgtcatc      2160
     gatgaggtgt tagctggagc gttggaccgt gtgcaaaacc gtgggctgct ttggcagccg      2220
     atcaggatgg agcatctcaa cgacctcgac tttgcggatg acattgtgct gttctcgcag      2280
     agaggaaacg acatgcagaa caagctggac gacctagctg catgctcctc ggcggcgggt      2340
     ctgaaagtca atgtctccaa aaccaagtcg atggcagtga acacggaacg cgctcaaggc      2400
     ttcacggtag ctggtgaaaa cgttgagaag gtcgacactt tccagtacct tggtagccag      2460
     attgcgcctg atggtggtac caagctcgac atatccacgc ggatcaagaa ggccagaagt      2520
     gctttcgcgg gtctgcgcac cttgtggcga tcaaaccaaa tcagcttgcg cacaaaacta      2580
     cggatcttca actcgaacgt caagtcggtg ttgctctacg ggagtgagac ctggtgcgta      2640
     tcgagccaga acacgtcgaa gctacaagtc tttgtgaacc gctgcctacg caatatcctt      2700
     cgcgcctggt ggccccgaaa ctgggtatcg aatgcggagt tgcatcggcg gtgtcagcag      2760
     aggcccattc acgttgagat ccgagagcgc aagtggagat ggatcggcca cacgctacgg      2820
     aaggatgcgc acgagatctg ccgagaagcg ctggactgga accctcaagg acaacgcggt      2880
     cggggcagac caagaggctc atggcggaga agcctccacc aagaaatcag tgctgttgac      2940
     gggacgttaa gctggcgcca agtgaaggcg aaagcagaga atcgtcaaca gtggaaatcc      3000
     ttcaacgcgg ccctatgctc cactggggag caggamgcat aagtaagtaa gt              3052
//
ID   RTE-1_DAn   repbase;    DNA;    INV; 3361 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3361
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 405-405 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           363..3326
FT                 /product="RTE-1_DAn_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MITRTNTSTIEPNDTPKPMTTLRISKRTRIGQWNVRT
FT                 LMEPSRLAQLENEMDRLQIAIAGISEMRWSGKGATTTSQSNLVLHSGSSDG
FT                 GRNGVGIYVSRKFKQTLISWNPVSDRIITARFRCNARHITIVQCYAPTEDA
FT                 SDDIKDDFYNALISSLNKVIRGDIKILMGDFNAKVGPNNTGLESTMGRHGI
FT                 GTRSDNGDRLIDLCQTFQLVIGGTVFPHREVHKYTWTSPDGNTRNQIDHLC
FT                 ISKRWRRSLRDVRNRRGASIDSDHELVVGEISIKLQRKHTATRATRRPTPL
FT                 NIHRLRDTTLSSRMATALREQLTPQRNCPWEQTCRLLRSTAEEMLGTRQRS
FT                 CSEWISADTWERELISRRNRLKSIADHDGRAREEHRNLCKLVKKSARRDKR
FT                 AVLDSIAENAERAANTNNMRSLYQLIGKLSGSYQRQTQPIRDSDGRLLVDD
FT                 DAQLERWRQHFMEISCTEQPGNTQPDFRSIVPNSSVRIPPTPPSIREIRDA
FT                 IRKLKSNKAAGEDGISAELLQIDPQLMAETLHPHFKDIWESERVPDAWKRG
FT                 VIVKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLMEKLEPTIRDEQG
FT                 GFRPLRSCVDQANTLRTITEQAVEWRSPLYLLFIDFQKAFDSIDRAAIWRA
FT                 LARKGVPINIVNIVRAMYDDADLAVLHNGKISAPFQTNTGVKQGCPLSPLL
FT                 FNLVIDEIMREVSMHRRGITWSFTQHLEDLDYADDICLLSHRLIDIQAKAS
FT                 DLEKRANAVGLSINASKTKAMRFNNSNQGSITISGKTVDFVDHFTYLGTII
FT                 SSSGGVEKDVESRLCKARSAFGRLHRIWRNQQISRRTKLRIFNACVKSILL
FT                 YGAETWLTSQRMMTKLQSFINKCLRIICGIFWPNRISNSDLWRNTGEAPIH
FT                 HQIKKKKWKWIGHALRKKTDSIVRKALDWNPQGSRRVGRPKLTWRRTIIQE
FT                 LSRSNITWDYAKQTAPNRVRFKVLVNALSSQAE"
XX
SQ   Sequence 3361 BP; 1108 A; 823 C; 804 G; 626 T; 0 other;
     ggggggggcc tcgtagccta gcggttagca cgctagctcg ctaagcatga ggttgtgggt        60
     tcgattccca ctcatgacaa gtgcatgacc ctacactttc ggcttgtaat atttatactg       120
     tgtaattgta agcaattcac aatggcctct tgctagctca gcggtagcgt atttgcctac       180
     caaacaagag gtcgtgggtt cgatcccgac ccccgataaa aaaaaaaaat tatgaattat       240
     tataatttcg catgatattt atgaaaaagt caaaagcgga actcccagat gtcgacaagt       300
     ggcagcccca ctacatggga taagtcgcgt ccggccaatc accgggccga acgaaaataa       360
     caatgattac aagaacaaat acaagtacaa tcgaaccaaa tgacactcca aaaccgatga       420
     cgacccttcg catctcgaaa cggacacgaa ttggacaatg gaacgttagg actctgatgg       480
     agccatccag attggcgcag ttggagaacg agatggaccg actgcagatc gcaattgctg       540
     gcatcagcga gatgagatgg agtgggaagg gagcaacaac aacatcacaa agtaatctag       600
     tgttgcatag cggaagcagt gatggtggac gaaatggagt agggatttat gtgtcgagga       660
     aatttaagca gacacttatc tcctggaacc ccgtctctga cagaatcatc accgccagat       720
     tccgatgcaa cgccaggcac atcaccatcg tgcaatgcta tgccccaaca gaagacgcca       780
     gcgatgacat caaagacgac ttctacaacg cactcatctc atctctcaac aaggtcataa       840
     gaggcgacat caagattctc atgggtgact tcaatgcgaa agtcggcccc aacaacaccg       900
     gattggaatc aaccatgggc cggcatggta tcggcacgcg aagtgacaat ggagacaggc       960
     tgatcgactt atgccagacc ttccagttgg tcattggagg aacagtattt ccccacaggg      1020
     aagttcataa atatacatgg acatctccag atggaaatac ccgcaaccaa atcgaccacc      1080
     tgtgcataag taagagatgg aggcgttcgc tgagagatgt acgcaatagg agaggcgcgt      1140
     caatagacag tgaccacgag cttgtagttg gagagatctc aatcaaactc caacgaaagc      1200
     acactgccac cagggccaca agaagaccga cccccctgaa tatacatcga ctcagagata      1260
     ctaccctatc ctccagaatg gcaacagcac tacgcgaaca gttgacacca cagcggaact      1320
     gcccttggga acaaacttgc agactactga gaagtaccgc agaggagatg cttggcacga      1380
     gacaacgcag ctgctctgaa tggatctcgg cggacacatg ggaacgggaa ctcatcagca      1440
     gacggaatag actcaagtcg atagcggatc acgacggcag agccagagaa gaacacagga      1500
     atctctgcaa attggtgaaa aaatcagcta gacgcgacaa gagagccgta ctggacagca      1560
     ttgcagaaaa cgcagaaaga gcagcaaata caaacaacat gcgctcactg taccagttga      1620
     taggcaaact atctggaagc taccagaggc aaacccaacc cattcgagac tcagacggta      1680
     ggctcctagt agacgacgat gctcaacttg agagatggag gcaacacttc atggagatca      1740
     gctgtacaga gcaaccaggc aacacacagc ccgacttcag aagtatcgta cccaacagca      1800
     gcgttaggat acccccaacc cctccctcaa tcagagaaat acgagatgca atcaggaagt      1860
     taaagagcaa caaagcggct ggagaggacg gcatatctgc cgaactcctc cagattgacc      1920
     cgcaactaat ggccgaaaca ttgcacccgc atttcaaaga tatatgggaa agtgagcgag      1980
     ttcctgacgc ttggaagaga ggagtaatcg ttaagctacc aaaaaaggga gacctcagtg      2040
     actgtaacaa ctggcgaggg atcaccctgt tgaacaccag ctataaaata ttagcgaccc      2100
     tgctgaacga acgacttatg gagaaactag agccaacaat tcgagatgaa caaggaggtt      2160
     ttagaccact taggagctgc gtagaccagg caaacacgct acgcacaata accgaacaag      2220
     ccgtggaatg gcgttcgcca ctataccttc tattcatcga cttccaaaaa gcgtttgact      2280
     caatagacag ggcggcgata tggcgtgcac ttgcaaggaa aggagtgcca atcaacatcg      2340
     taaacatagt aagagctatg tatgatgatg cggacctggc agtactgcac aacggaaaaa      2400
     tcagtgcacc ctttcagacg aacactggcg tcaagcaagg ctgccctcta tcacccctac      2460
     tgttcaacct ggtgattgat gagatcatga gagaagtaag catgcatcga cgcgggataa      2520
     cttggagctt cacacaacac cttgaagacc tagactacgc cgacgatata tgcctcctat      2580
     cacacagact catcgatata caagccaagg cgtccgacct cgagaagaga gccaacgcag      2640
     taggcctctc catcaacgca tcaaagacca aggcgatgcg gtttaataac tccaaccaag      2700
     gtagcatcac catcagcggt aaaacagtcg atttcgtcga ccactttacc taccttggca      2760
     ccataatatc atccagtggt ggagtggaaa aagatgtaga gagcagactg tgcaaggcaa      2820
     gatctgcatt cggaagattg caccgcattt ggagaaatca gcaaataagt agaagaacaa      2880
     agctgcggat cttcaatgcg tgtgtaaaat ccattcttct gtacggagct gagacgtggc      2940
     taacctccca aaggatgatg acaaagctgc agtcattcat taacaagtgc ctcaggatca      3000
     tatgtgggat attctggccc aacagaattt ccaacagtga cctgtggcgc aacacggggg      3060
     aggctcccat ccatcaccaa atcaagaaga aaaaatggaa atggataggt cacgcactca      3120
     ggaagaaaac agacagcata gtcaggaagg cactggattg gaacccacag ggaagcagaa      3180
     gagtgggccg ccccaagctt acctggcgcc gtactataat acaagaatta tcccgcagca      3240
     acatcacgtg ggattacgct aagcaaactg caccaaacag agtcaggttc aaagtccttg      3300
     taaatgccct aagctcccaa gcggagtaat aggagaaaaa aaaaaaaaaa aaaaaaaaaa      3360
     a                                                                      3361
//
ID   RTE-1_DBi   repbase;    DNA;    INV; 2951 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   RTE non-LTR retrotransposon from the Drosophila biarmipes genome.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2951
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 942-942 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           749..2926
FT                 /product="RTE-1_DBi_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="MRLCRAKNIRPITQRKLDVTRLRSQRTAIAYSTHLSE
FT                 LLHQPIPLPVDAGGLWAHISHSMRAAAETTIGFKRPPTRNQWYDEECRVAA
FT                 AAKNAAHRKTLQSGATRATCERYREKRKEERRLFRRKKREQESECEELEVL
FT                 QDRNDVRKFYQQVNRLTQGFKTGASNCRDENGNLVTDTQCTLRLWREHFSK
FT                 LLAGDDGTNPAIGGSSPIPPIDDNVDIPLPNHDEVRVAITRLKNNKAAGAD
FT                 GLPAELFKAGGEELIRCMHQLLCKIWLEESMPNDWNLSVLCPVLKKGDPTI
FT                 CANYRGISLITISYKVLSSVICERLKPYTSTLIGPYQCGFRPGKSTIDQIF
FT                 TLRQILEKTHENNIDTHHLFVDYKAAFDSPTRERLYATMSEFGIPAKLIRL
FT                 CRMTLSSTISSVKVGTNLSEPFNTVRGFRQGDPLSCDLFNFVMEGVLRKAG
FT                 VHRSGTIFYKSVQLLAYADDIDIIGRSKRDVTAAFSAIEKESAKVGLAVNE
FT                 GKTKYMLSTSREARRLDSHVVADSYTFEVVKEFTYLGTAINTENDVSLEIK
FT                 RRITLANRCYFGLSKQMCNRDLSRRTKLTLYKTLILPVLLYGAEAWVISQT
FT                 DAAALXVFERKILRKIFGPVRIGDDFRIRMNHELYELYDDVDVVRRITIQR
FT                 LRWLGHVVRMDEESPAQKVFEARVDYGRRRRGRPKLRWKDQVEENLTALGI
FT                 SDWRRRARSRGAWRETLRSAKTRIGL"
XX
SQ   Sequence 2951 BP; 816 A; 749 C; 780 G; 604 T; 2 other;
     ggatgggatg gctttcattc gtacagagta aagttttctg atcgcggcca acttggtggc        60
     cgccagtgcg atctctgttt tcgaaggatt gcaagttgac acacagcctc ctcgtggcac       120
     ctcctgggta gctatcttag catccgctag atagtgagct aatgtgtgca gcgagtcacc       180
     cggacgttaa gcggttgagc gcagggtttg gaacccgcct cgtaaaaaaa gaagcccagt       240
     gaagaccaaa gcgaaagcct cggaaaggat ccccccttat gatgacgacc accgcaaaac       300
     gaaaaaggac tacgatttaa ggatatgcac ctggaatgtc cgaaccctta attgggaagg       360
     tgcctctatc caactggcgg atgccctcga aaaattaaag gctgacatta ccgccatcca       420
     ggaaatgaga tggacaggma aaggtcggtc gcgaacgcat ctttgacccc accgtcggtc       480
     gattcagcct ccatgagacc acctcgaaca acggtctcag gctgattgac ttcgccgcgg       540
     cgcgaaacat ggtagtgagt agcaccagat ttcggcacct cgacatccac aaggccacat       600
     ggctgtcccc tgatcaaaag acgcgcaacc agattgatca cgttgtgata gacggaaggc       660
     atgcctcaag cgtgatggac gtgcgtacgt ttcgttttaa ggagtcaaca ttgactcgga       720
     ccactatctt gtcgcagcca agatacgcat gcggctatgc cgagcgaaaa acatacgccc       780
     catcacgcaa cgaaagcttg acgtcactag gctgcgatca caacggacag caatagcata       840
     ctccactcac ctctcggaac tgctccacca acctatccct ctccctgttg acgccggcgg       900
     actctgggcg cacatatccc actccatgcg agctgctgct gaaacaacca ttgggttcaa       960
     gcgcccaccc acacggaacc aatggtatga cgaggagtgt cgcgtcgcag ctgcagcaaa      1020
     aaacgccgcc cacagaaaaa cgctgcagtc tggcgcaacg cgagctacgt gtgaacgtta      1080
     cagggagaaa aggaaggaag agaggcgact tttcagacgg aaaaaacggg agcaagaaag      1140
     cgagtgcgag gaacttgagg tgttacaaga caggaatgat gttcgaaaat tctaccaaca      1200
     agtcaaccgt ctgacacaag gtttcaagac cggagcatct aactgtcggg atgaaaatgg      1260
     aaatctggtt acggatacgc agtgcacgct gaggttatgg agggagcatt tctccaagct      1320
     gctagcaggc gatgacggca ccaatcccgc cattggagga agcagcccga taccaccaat      1380
     cgacgacaat gtggatatac cactacctaa ccatgacgag gtccgagttg ctataacgcg      1440
     gctcaaaaac aacaaagcag ccggtgctga tggactgcct gcagagttgt tcaaggccgg      1500
     cggcgaagag ctgataaggt gcatgcatca gctcttgtgc aaaatatggc tagaagaaag      1560
     catgcccaac gattggaatc tcagcgtcct ttgtcccgtt ctgaagaaag gtgacccgac      1620
     gatatgcgcc aactaccggg gaatcagcct gattaccatc tcatacaagg tcctatcgag      1680
     cgtaatatgt gaacgactga agccgtatac cagcacactg atcggacctt atcagtgcgg      1740
     cttcagacct ggtaagtcca ccatagacca gatcttcaca ttacgccaaa tcctggaaaa      1800
     aacccacgag aataacattg acacacacca tctctttgtc gattataaag ctgcattcga      1860
     tagcccgacg agggaacgcc tatatgccac catgtctgag ttcggtattc ctgcaaagct      1920
     aatacgtctt tgcagaatga cattgagcag caccatcagc tctgtcaagg taggaacgaa      1980
     cctctccgaa ccttttaata ccgttcgagg ttttagacaa ggcgaccccc tgtcgtgcga      2040
     cctcttcaat ttcgtgatgg aaggggttct gcggaaagcc ggtgtacatc gatctggcac      2100
     tattttttac aaaagtgtcc agctccttgc gtatgccgat gatattgaca tcattggccg      2160
     cagcaagcgt gatgtcactg ctgcattttc ggctatcgaa aaagagtcgg caaaagtggg      2220
     tttggcggta aacgagggca agacgaagta tatgctgtcg acaagcaggg aggcgcggcg      2280
     cctagactcc catgtggtag cggacagcta taccttcgaa gtggtcaagg agttcacgta      2340
     ccttggcact gccattaaca ccgagaatga cgtcagcctg gagatcaagc gaagaatcac      2400
     acttgccaat aggtgctact ttggtctgag taagcaaatg tgcaatagag acctctctcg      2460
     ccgaacaaaa ttaacactct acaagacact catcctaccc gtgctattat atggcgcaga      2520
     agcatgggta atatcacaga cggatgcagc agcgcttgsa gtgttcgaga gaaaaattct      2580
     tcgcaagatc tttggtcccg ttcggattgg ggacgacttt cgtattcgga tgaaccacga      2640
     gctgtacgag ttgtacgacg acgtggacgt ggtccggcgc atcacgatac aacgtctgcg      2700
     ctggctcggc cacgttgtgc gtatggatga agaatctcca gctcagaagg tgtttgaagc      2760
     gagggtcgac tacgggcgac gacgaagggg acgaccaaag ctccgatgga aggaccaagt      2820
     ggaggagaac ctgactgcac tgggtatttc cgattggaga aggcgcgcga ggagcagagg      2880
     cgcgtggagg gagacgctga ggtcggccaa aacccgaatc gggttgtagt gccacctaat      2940
     aataatgata a                                                           2951
//
ID   RTE-1_DBp   repbase;    DNA;    INV; 3232 BP.
XX
AC   .
XX
DT   18-DEC-2011 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3232
RA   Jurka J. and Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 730-730 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           360..3209
FT                 /product="RTE-1_DBp_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEPTRLAQFEGEMEKMQIAIAGISEMRWRGNGTTTTS
FT                 SGNLVMHSGTNDGGRSGVGIYVSKQYKQALISWSPVSDRIIIARFRCNARH
FT                 ITIVQCYAPTEDASDDIKDDFYNALTSSLTRIERGDIKILMGDFNAKIGPN
FT                 NNGLETIMGRHGVGTRSNNGDRLIDLCQTFQLVIGGTVFPHKEIHKYTWTS
FT                 PNGHTRNQIDHICISRKWRRSMMDVRNRRSASIDSDHELIIGELLIKLRRN
FT                 SNTVNRTTRRPPPINVQRLSDSNLSTRMATTLREQMTAQPLNHSWEQTCSI
FT                 LRSTAEEMLGTRQRRRTXWISAHTWELISKRNSLKSKADHDCRARDEHKEL
FT                 CKMVKKSARNDKRKFLDRLAENAESAANTNNMRSLYQIISQLTGSCHRRTQ
FT                 PVRDPDGRLLTDDEAQLQRWRQHFMEISCTEQPSSTQDNFRSIVPSNNLRI
FT                 SPTAPSIREIKDAIRKLKRNKAAGDDGIPAELLQINTQLMAETLHPHFNNI
FT                 WESERIPTSWKKGIIIKLPKKGDLSDCNNWRGITLLNTSYKVLATLLNERL
FT                 QEKIEPTIRDEQGGFRPHRSCVDQANTLRAITEQTVEWRSPLYLLFIDFQK
FT                 AFDSVDRAAIWRALARKGVPVKIINIVKAMYDDAELAVLHNGKISAPFQTN
FT                 TGVKQGCPLSPLLFNLVVDEIMREVCMNRRGITWNFTRHLEDLDYADDICL
FT                 LAHKFEDIQAKARDLEIRASAVGLKINASKTKAMRINNSNTNNITIGDNTI
FT                 DFVDSFTYLGTIITSNGGVESDVENRLRKARSAFGRLHRVWRNQQINRKTK
FT                 LRIFNSCVKSILLYGSETWLTTQRILMKLQAYINKCLRIILGVFWPDRISN
FT                 EDLWHCTGEVPIQEQIKKRKWKWIGHALRKEPGSIVRMALEWNPQGSRRVG
FT                 RPKMTWRRTALLEISRKNISWDTIKQTAANKVRWRALVEALSSREE"
XX
SQ   Sequence 3232 BP; 1107 A; 768 C; 770 G; 586 T; 1 other;
     aaaaacaatg cccatagcct agtgggtagt gtagctgcac gctaagcgtt gggtcgtggg        60
     ttcgaacccc actcatggca atcatgacct ccaaagtttt tcggcttcat tatgcttagt       120
     ggtctctttt ccgatgctac taaacatgtg aggtcgaaaa acggtattcc cagatatcga       180
     caggtggcag ccccacctct gggataggtt gcacctggct aatcaccgga tcaactgaaa       240
     aacaattgat taacgaaact aatacaagaa gagaagaaac caaccacccc cccaacccgt       300
     tgacgaccat tcgcatatcg aaacggacac gaattggaca atggaacgtg aggactttaa       360
     tggaaccaac cagactggcg cagtttgaag gagaaatgga gaaaatgcag atcgcaatcg       420
     caggcatcag tgagatgaga tggagaggta acgggacaac aacaacatca agcggcaatc       480
     tagtgatgca cagcgggacc aatgatggag gcaggagcgg agtcgggata tatgtgtcca       540
     aacagtacaa acaggcacta atttcctgga gcccagtatc cgacagaatc atcattgcca       600
     gattccgatg caatgctaga cacatcacca tcgtgcagtg ctatgcccca acagaagacg       660
     ccagcgatga catcaaagac gacttctaca acgccctcac atcctcactc actaggatcg       720
     aaagaggtga cataaaaatt ctcatgggag acttcaatgc gaaaatcggc cccaacaaca       780
     acggattgga aacaatcatg ggccgacatg gtgttggcac acgcagcaat aatggtgaca       840
     ggctaatcga cttatgtcag accttccaac tggttattgg tggcactgta ttcccccaca       900
     aggaaatcca taaatacaca tggacctctc cgaatggaca tactcgcaac caaatcgacc       960
     acatctgcat aagtaggaaa tggagacgct cgatgatgga tgttaggaat aggagaagcg      1020
     cgtctatcga cagtgaccac gagctgataa tcggagagct tttaatcaag ctcagacgaa      1080
     atagcaacac tgtcaacagg accacaagaa gaccgcctcc cattaacgta caacggctga      1140
     gtgactccaa cctatccacc agaatggcca caacgttgcg tgaacagatg acagcacaac      1200
     cgttgaatca ctcatgggaa caaacatgca gtatactgag gagcaccgcg gaggagatgc      1260
     ttggcacccg acaacgcagg cgcacggant ggatatcagc gcacacttgg gaacttatca      1320
     gcaaacggaa cagcctaaag tcgaaagcag atcatgactg cagagctcgc gacgaacaca      1380
     aagagctgtg caagatggtg aagaaatcag caagaaacga caaaagaaaa tttctggaca      1440
     ggctcgctga aaatgcagaa agcgcagcca acacgaacaa catgcgctca ctgtaccaga      1500
     taattagtca actgaccgga agctgccata ggcgaaccca accagtgcgg gacccagatg      1560
     gaagactcct tactgatgat gaggcacaac tccagagatg gcgacagcac tttatggaga      1620
     tcagctgcac agaacaaccg agcagcacgc aagataactt caggagtatt gtaccgagca      1680
     ataacctcag aatatcaccc acggcaccat caattagaga aataaaggat gcaatcagga      1740
     aattaaaacg caacaaagcg gctggagatg acggcatacc ggccgaactt ctccagatta      1800
     acacgcaact aatggccgaa acactgcatc cacatttcaa taatatatgg gaaagtgagc      1860
     ggatcccaac atcctggaaa aaaggaatca tcattaagct accgaagaaa ggagacctca      1920
     gtgactgcaa caactggcga ggcattaccc tgttgaacac aagttacaag gtactagcca      1980
     ctctactaaa cgaacgtctt caggaaaaga tagagccaac aatacgagat gaacaaggag      2040
     gtttcagacc acacaggagc tgcgtagacc aggcaaacac actacgcgca ataaccgaac      2100
     aaactgtgga atggcgctcg ccgctgtacc tcctgttcat agatttccag aaggcattcg      2160
     attcggtaga cagagcagcg atatggaggg cacttgcaag aaagggagtg ccagtgaaaa      2220
     tcataaacat agtgaaagct atgtatgatg atgctgagct ggcggtactg cacaacggga      2280
     aaattagtgc acccttccag acgaacacag gcgtcaagca aggatgtcct ctatcaccac      2340
     ttctgttcaa cttggtagtc gacgaaatta tgagagaagt atgcatgaac agacgcggaa      2400
     tcacctggaa cttcacccga catctagaag acttggatta cgcggatgac atatgtctct      2460
     tggctcacaa attcgaagac attcaagcca aagctaggga cctcgagatc cgagccagcg      2520
     cagtaggctt aaagatcaac gcatcaaaaa cgaaagctat gcggatcaac aactccaaca      2580
     caaacaacat cacaatcgga gataatacca tcgacttcgt cgacagcttc acctacctcg      2640
     gtactatcat aacatcaaat ggtggagtgg aaagtgatgt ggagaaccga ctgcgcaaag      2700
     cgaggtctgc atttggaaga ctacaccgag tatggagaaa ccagcagata aacagaaaaa      2760
     caaagctgcg catattcaac tcgtgtgtaa aatccatact gctatacgga tcggagacgt      2820
     ggctgaccac tcaaaggata ttgatgaagc tgcaggctta catcaataag tgcctaagaa      2880
     taatacttgg ggtattctgg ccagacagaa tatccaatga ggacttatgg cactgcacag      2940
     gagaggtccc aatccaggaa caaataaaga aacggaaatg gaaatggatt ggccacgctc      3000
     tgaggaagga accaggaagc atcgtaagaa tggctctgga atggaaccca caaggaagca      3060
     gaagagtggg tcgcccaaag atgacctggc gccgtacagc actcctagaa atatcccgga      3120
     agaacatcag ctgggacaca ataaagcaaa cagcggcaaa taaagttagg tggagagccc      3180
     ttgtagaggc cctaagctcc cgagaggagt aataaggaaa aaaaaaaaaa aa              3232
//
ID   RTE-1_DF    repbase;    DNA;    INV; 2624 BP.
XX
AC   .
XX
DT   26-SEP-2011 (Rel. 17.06, Created)
DT   26-SEP-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-2624
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 990-990 (2012).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           137..2608
FT                 /product="RTE-1_DF_1p"
FT                 /translation="MGDFNAKIGPNFTRMRSATGGHGIGTRNNNGDRLVEV
FT                 CQMFQLIIGGSMFPHRDIHKYTWTSPSGNTRNQIDHICISRKWRKSLLDVR
FT                 NKRGASIDSDHELIIGELSIKLDRNRPRNADDSRNHRPSPLNIHLLGETDI
FT                 SARLASTLRTHLLPQQGQTWEQTCDTLRTTAEGIIGTQQRRRNNWISSATW
FT                 DTINKRNSLKLLADRDSNRRDEHRALCKAVKRAARNDKRALLDRLADNAER
FT                 AANENNMRSLYQTIEQISGGYRRKTQPVKDANGILLTSDDDQIHRWRQHFM
FT                 EISNSDMPSRSDDYRSVAPANGNRRISSAPPSVREIGNAIKKLKNNKAAGM
FT                 DGIPAEILQVDTQLMAEILHPHFSSAWESEHIPDSWKCGVIVKIPKKGDLS
FT                 DCNNWRGITLLNTSYKVLATILNERLTEKFEPTLRDEQAGFRPHRSCVDQA
FT                 NTLRIITEQAVEWRAPLYLLFIDFKKAFDSINRAAIWGALARKGVPHKVIA
FT                 LIKALYDDANLAVLHNGKTSAPFQTNTGVKQGCPLSPLLFNIVVDEVMREV
FT                 CKHKRGITWSFTRHLEDLDYADDICLISHKLSDIQSKVDDLVNLASRVGLQ
FT                 INTAKTKAMRLNHASQGNIIVDGNPIEYVESFPYLGTVISSNGGVTEDVTS
FT                 RLAKARSAFGRLYRIWRSRQIRRKTKIRIFNSCVKSVLLYGSETWLTTKTI
FT                 IQQLQAFTNKCLRIICGIFWPNRISNIDLWNMTGETAIRLQIRKKKWRWIG
FT                 HALRKDQXSIVRTALEWNPQGSRRVGRPKATWRRTALQELSQYNITWDTAK
FT                 QTAXNRVRWRNLVEALCSQEEL"
XX
SQ   Sequence 2624 BP; 894 A; 677 C; 616 G; 434 T; 3 other;
     atgtagggcc agaccaataa caatcgtgca gtgttacgcc ccaaccgaag acgcaaacga        60
     cgacatcaaa gacgacttct ataccgccct tactaccact ctcactgaca tacctcgagg       120
     caacatcacc gttctcatgg gcgacttcaa tgcaaaaata ggacccaact ttaccagaat       180
     gaggtcagcc actgggggcc acggtatagg cacgcgtaat aacaatggag atagactagt       240
     agaagtatgc caaatgtttc agttaatcat tgggggtagt atgttcccac acagagatat       300
     ccacaaatac acgtggacat ctccgagtgg aaatacacgt aaccaaattg accacatttg       360
     tataagcaga aaatggagga agtctctact ggatgtaagg aacaagaggg gagcatcgat       420
     agacagcgac cacgagctga tcattgggga gctctcaatc aagctggacc gcaatcgccc       480
     gcgaaacgct gacgactcaa ggaaccaccg cccgtccccc ctcaacatac acctacttgg       540
     cgaaacggac atcagcgcca gacttgcatc aacattacgc acccacctac taccgcagca       600
     aggccagaca tgggaacaga cgtgcgatac actaaggacc accgcagaag gcatcattgg       660
     cacccaacaa cgaagaagaa acaactggat ctctagcgca acgtgggaca cgatcaacaa       720
     aaggaactca ctgaaattac tggctgaccg cgacagcaat agacgcgacg aacaccgcgc       780
     actatgcaaa gctgtcaaga gagcagccag aaatgataag agagccctac tggatagact       840
     ggcagataat gcagaacgcg cagcaaacga aaacaacatg cgatcactat accagacaat       900
     tgaacaaatc tcaggaggct atagaaggaa gacccagcca gtcaaagatg ccaacggaat       960
     acttctcact agcgacgacg accaaatcca cagatggcgc caacacttca tggaaatcag      1020
     caactccgac atgcctagca ggagcgatga ctacagaagc gttgcgccag caaatgggaa      1080
     ccggagaata tcatccgccc caccctccgt gagagaaatc ggaaatgcaa taaagaagct      1140
     aaagaacaac aaagctgccg ggatggacgg cattccagcc gaaatcctcc aagttgacac      1200
     tcaactgatg gcagaaatat tgcatccgca cttctcgagt gcatgggaga gcgaacacat      1260
     tcccgactcc tggaaatgcg gagtcatagt gaaaataccc aagaaaggag accttagcga      1320
     ttgcaacaac tggagaggga tcacactact gaacaccagt tacaaagtcc tagccacaat      1380
     tctgaacgaa cgcctgacgg aaaaattcga gcccacacta agagatgaac aggcaggctt      1440
     cagaccacac aggagctgcg tagaccaagc caacacccta cgcatcataa ccgaacaagc      1500
     tgtggaatgg agagcaccac tgtacctcct gttcatcgat ttcaagaagg cgttcgattc      1560
     aataaataga gcagcgatat ggggagcgct tgctaggaaa ggagtaccgc acaaagtcat      1620
     cgccctaata aaggcgctat acgatgacgc caacctggcg gtactgcaca acgggaagac      1680
     aagtgcacct ttccaaacaa acaccggggt caagcaagga tgcccactat ccccactgct      1740
     cttcaacatt gtggtggacg aggtcatgag agaagtgtgc aaacacaagc gtggaatcac      1800
     atggagcttc accagacacc tngaagactt ggactacgca gacgacatct gcctaatctc      1860
     tcacaaactg agcgatattc aatccaaagt tgatgacctc gtgaacctag ccagccgtgt      1920
     gggtctacaa attaacacgg cgaagacaaa agcgatgcgc ctcaatcacg ccagccaagg      1980
     aaatatcatc gtagatggaa acccaataga atacgtcgag agtttcccat accttggcac      2040
     cgtaatctcc agcaacggtg gcgtgacaga agatgtgacg agcaggctag ccaaagccag      2100
     gtctgccttc gggagactct accgcatatg gagaagccgc caaataagaa gaaaaacaaa      2160
     gatacggatc ttcaactcat gcgtaaaatc cgtcctacta tacggaagcg agacgtggct      2220
     cacaacaaag acaataatcc agcaattgca ggctttcacc aacaagtgtc tcagaataat      2280
     atgcgggatt ttctggccaa acagaatctc caacatagac ctctggaata tgacgggtga      2340
     aacagcaata agactccaaa tcaggaagaa aaaatggaga tggataggcc acgcactgcg      2400
     aaaggaccag ganagcatag ttagaacggc gctagagtgg aacccacagg gaagcaggcg      2460
     tgtaggcagg cctaaagcga catggagacg aaccgccctt caagagctgt cccaatacaa      2520
     catcacatgg gacacagcga aacagacagc angaaataga gtaagatgga ggaatctagt      2580
     cgaggcccta tgctcccagg aggagttata aaggaaaaaa aaaa                       2624
//
ID   RTE-1_DPl   repbase;    DNA;    INV; 2585 BP.
XX
AC   .
XX
DT   27-DEC-2011 (Rel. 23.01, Created)
DT   27-DEC-2011 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type retrotrotransposon from the monarch butterfly genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-2585
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 125-125 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(175..852,856..2250)
FT                 /product="RTE-1_DPl_1p"
FT                 /translation="MRRRVQCAFLQETRWKGNKFRNIGRGYRLIYTGSPSG
FT                 KAGVAVVLSEELRNGLLEVDRRCDRLMRVRVLIEGVITNLISTYTPQAGRS
FT                 GSEKESFWEQFEEVLRAIPAAEVIIVGGDLSNHVVGGDLNGHVGRAADTFE
FT                 RVHGGFGYGRRNTEGENILRTCIASDLAVVNTFFQKTPQHLITYKSGSHST
FT                 QIDYLLTRRCHIGKVTDRKVKKLVDCKVIPGESLTARRLLVMDYVVTPKKK
FT                 VAEKGKPRIRWWFLNRTTQTNFRAEVESQQSVKTAGKRVLGLSKGGRVIDK
FT                 ETWWWNDEVQXVIREKKTAFKKSNSPEDRLEYIAAKRASKRAVARARSDRL
FT                 SPLYDTLETAEGQKLIYKLARARDKATQDIAKCLCVKDSQGTXLCNHASVK
FT                 ERWRCYFKELLNTQHPCSLPTEPPPNLGLIAPITPDETRNCLRRMKNRKAV
FT                 GPDDIPIEAWKSLGSLGVLILTDLFNRVLNTGTMPHQWRYSYITPIYKGRG
FT                 SVQDCGSYRGVKIMSHTMKLFERMIDLRLRRECTVSECQYGFQPGSGTLDA
FT                 IFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALRFKGIPEAYI
FT                 DIIRDMYRDSVSMVRTAVGDTKPFPISVGVHQGSALSPFLFNVVLDTVSAN
FT                 IQDQPPWLMMYADDIALIDETHSGASRHGDEDAEVDVWRYGG"
XX
SQ   Sequence 2585 BP; 688 A; 588 C; 718 G; 586 T; 5 other;
     ggactgggta cggctagggc gtcgccgata aacgacgcgc aggcatatcg ccctatacct        60
     gcgttaagta cgggcacggg ctaaagacgt caagtaccca aacggaaact ccgctttgca       120
     acgtggaata ttggctctct aaccggacga tgcagagaac tcgcagatgt actcatgaga       180
     cgtcgggtcc agtgtgcgtt cctccaggaa actcgctgga agggcaataa gtttcggaac       240
     atcggacggg gttaccggct gatatacact gggtcgcctt caggtaaagc tggtgtagcg       300
     gtagtgctat ccgaagagct tcggaatggt cttcttgaag tcgaccgtcg ctgcgaccgc       360
     ctgatgcggg tgcgagtact gatcgaggga gtcattacta acttgatcag tacctatact       420
     cctcaggcgg gacgtagcgg gtccgaaaaa gagtcattct gggagcaatt tgaagaggtt       480
     ctacgcgcta taccagctgc tgaagtaatc atagttgggg gggacttaag taatcacgta       540
     gttggggggg acttaaatgg ccacgtaggt agggctgcgg atacgtttga acgtgtacac       600
     ggtggttttg gttatggtcg ccgcaataca gagggagaaa atattctcag aacctgtatt       660
     gcgtctgact tagccgtcgt gaacacgttc ttccaaaaga ctccgcagca ccttatcacg       720
     tataagagcg ggtcccactc aactcaaata gattatctgc tgaccagacg gtgtcatatc       780
     ggcaaggtga ctgaccgtaa agtaaaaaag ttagtcgact gtaaagtcat tcctggtgaa       840
     agcctgacgg cctaacgtcg tcttcttgtc atggactatg tcgtcacccc gaaaaagaaa       900
     gtagccgaga aaggtaagcc tcggatcagg tggtggtttc tgaaccgaac tacgcagacc       960
     aactttcggg cagaggtcga gagtcaacaa tctgtcaaaa cagcaggtaa acgagttcta      1020
     ggcctttcta agggaggacg ggtcattgac aaggagacat ggtggtggaa tgacgaagtg      1080
     cagnaggtga ttcgcgaaaa gaagactgcc tttaagaagt caaactctcc tgaagacaga      1140
     ctagagtaca tagcagcgaa acgtgccagt aaaagggctg ttgccagagc ccgcagtgac      1200
     aggttatcac cgttatatga tacacttgaa actgcggagg ggcagaagct catttacaaa      1260
     ttggcacgag ctcgggataa agcgacgcaa gatatcgcaa aatgtctttg cgtcaaagat      1320
     tcccagggca cgntgctgtg taatcatgcc tctgtgaagg agagatggag atgctacttc      1380
     aaggagttgc taaatactca gcacccgtgc agtcttccaa ccgaaccacc tcctaatctt      1440
     ggacttattg ccccgataac acctgacgaa actcggaatt gtcttcgacg catgaagaat      1500
     cggaaagcgg tgggacctga cgatattccg atcgaagcgt ggaaatcatt gggctctctt      1560
     ggtgtgctca tactgacgga cctttttaac cgcgtcttga acactgggac tatgccacat      1620
     cagtggcgtt atagttacat tacccctata tacaaaggca ggggcagtgt tcaagattgt      1680
     ggtagttata ggggcgttaa gatcatgagt cacaccatga agctctttga gcgcatgatc      1740
     gacctcaggc tccgccgaga gtgtactgtc tcggaatgtc aatatggatt tcagccagga      1800
     tcgggcacct tggacgccat ttttgccatc agaactctga tggaggcata cagggaaaaa      1860
     aggagagctc tgcatgtcgc attcctagat ctgcagaagg cctttgactg cgtgcctcgt      1920
     caatgtatct ggtgggcatt gcgattcaaa gggatccctg aggcctatat tgacatcatc      1980
     agagacatgt accgcgattc cgtttcaatg gttaggactg ctgttggcga tacaaaaccc      2040
     tttccgatct cagtaggggt tcaccaaggc tcggctctta gccccttctt gttcaatgta      2100
     gtgctggaca ctgtctcggc taacatccag gaccagcctc catggctgat gatgtatgcc      2160
     gatgacatag cgctcattga cgagacacac tcaggagctt cacgtcacgg agatgaagat      2220
     gctgaggtgg atgtgtggcg ttacgggggc tgaccgcata cgtaacacat ttatccgagg      2280
     tagtcttnga gtccgtgacg tagcggataa gcttcaagag agtcgcctna gatggtatgg      2340
     ccaggctgca cgccggcctg agaactacgt cggaaaaatt tgccttgata tgtctgtccc      2400
     cggagcaaga cccccaggac gcccaaggaa gcgatggctg gacaccgtga agcaggatat      2460
     gagagccaat ggacttacca ccgaggatgc caaagaccgt gcaaagtgna ggagtttgag      2520
     caggaaggca gaccctggct aaagctggga taattgccag gaagaagaag aataagatat      2580
     atata                                                                  2585
//
ID   RTE-1_DSa   repbase;    DNA;    INV; 3174 BP.
XX
AC   .
XX
DT   08-NOV-2011 (Rel. 19.10, Created)
DT   08-NOV-2011 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila santomea.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DSa.
XX
OS   Drosophila santomea
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3174
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila santomea.";
RL   Repbase Reports 14(10), 2772-2772 (2014).
XX
DR   [1] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >93% identity.
CC   ~90% identical to RTE-1_DYa from Drosophila yakuba.
XX
FH   Key           Location/Qualifiers
FT   CDS           108..3149
FT                 /product="RTE-1_DSa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MATGGSPTTGISRIWPITRSVEKLTTVTETNTRNLNI
FT                 NGSPNSITTIGISKRTRIGQWNVRTLREPSRLAQFEAEMEKLHIAIAGISE
FT                 MRWAGSGETTTSDSNLVLHSGNSDGSRYGVGIFVSKRIKKALVSWEPISDR
FT                 IMTARFXXRARHINITQCYAPTEDANDDTKDDFYTALTATLNKLRQGDINI
FT                 LMGDFNAKIGPNNTGLRSVMGQHGTGTRNDNGERLVELCQLFQLVIGGTIF
FT                 PHKDVHKYSWTSPSGNTRNQIDHICISRKWRHSLLDVRNKRGAAIDSDHEL
FT                 VIGELSIKLNRNHSRNTGNSQHRRAPPLNLHLLSDSTLKTRMTSTLREQLI
FT                 PLEDHPWEHTCRQLRTTAEEILGLQQRGRSDWISEGTWDLIRRRNHLKPLA
FT                 DQLTQYREEYHGLCRAVKRSARKDKRAQLDRLAADAERAAGENNMRSLYQQ
FT                 IARFAGTHHKQNKPVRDLEGNLLSNDDAQIRRWRQHFMGISHTTSPNVAID
FT                 YRSVVPPSGSSRIPSAPPNVREIVNAIKKLKHNRAAGEDNIPAELLQVDTQ
FT                 LMAEILHPHFSRIWEGETVPASWKSGIIVKLPKKGDLSDCNNWRGITLLNT
FT                 SYKILATLLNERLQEKIEPTIRDEQAGFRPHRSCVDQANTLRIITEQAVEW
FT                 RAPLYLLFIDFKKAFDSVERAAIWRALARKGVPANLIAIIKSMYDDANLAV
FT                 LHNGKTSAPFQTNTGIRQGCPLSPLLFNIVVDELMSEVCSSKRGITWNLTR
FT                 HLEDLDYADDICLISHRLDDIQRKSDDLVRIASSVGLEINIAKTKAMRFNH
FT                 SSQGNININGNPIEFITSFPYLGTIISNSGGVDDDVSSRLGKARSAFGRLY
FT                 RIWRDRQISRRTKLRIYNACVKSILLYGSETWLATKKITQKLQAFSNKCLR
FT                 VICGVFWPNRIANTELWRVTDESPIHIQIRKKKWMWIGHALRRNPSSIVRM
FT                 ALDWNPQGSRRVGRPRATWRRTAHQELAQINTTWASAKQTAQNRVRWKALV
FT                 EALSSREE"
XX
SQ   Sequence 3174 BP; 1045 A; 816 C; 760 G; 547 T; 6 other;
     ccctgtgttt ttctgcgaac agcaacaaca cccagcaggg cgagcgcgtt accagactgt        60
     tcgcttttct acgaataaca acacaacacc gtagacgcca atccccgatg gcgacaggtg       120
     gcagccccac cactgggata agccgcatct ggccaatcac magatcggtc gaaaaactta       180
     caacggttac tgaaactaat acgagaaatt taaacataaa cggctcccca aattcgataa       240
     cgactatagg catctcaaaa cggacacgaa ttggacaatg gaacgttaga actctaagag       300
     aaccatctag gttagcacag ttcgaggcgg agatggaaaa actccacatt gcaatagctg       360
     gaatcagcga gatgaggtgg gctggcagtg gggaaacaac aacatcagat agcaatctag       420
     tcctacacag tggcaacagt gacggcagca gatatggagt gggaattttc gtgtccaagc       480
     gcataaagaa ggcactggtt tcctgggaac ccatttctga tagaatcatg accgccaggt       540
     tcagwwgtag agctagacac ataaacatca ctcaatgcta tgccccgacg gaagacgcaa       600
     acgacgacac caaggacgac ttctatactg cccttacagc aaccctcaac aagctacggc       660
     aaggtgacat taacatcctc atgggtgact tcaatgcaaa aattggcccc aacaacaccg       720
     gactaagatc tgtcatgggc cagcatggaa ctgggactcg caacgacaac ggagagagat       780
     tagtggaact ctgccagcta ttccaactgg tcatcggcgg cacaatattc ccacacaaag       840
     atgtccacaa atactcctgg acatctccaa gtggtaatac gcgcaaccag atcgaccaca       900
     tatgcattag caggaaatgg agacactcgc tactggacgt acggaacaaa aggggagcag       960
     ccatagacag tgaccatgag ttggtcattg gagaactttc aataaagctc aaccgcaacc      1020
     actcaaggaa cactggcaac agtcaacacc ggcgagcgcc ccccctgaac ctgcacctcc      1080
     ttagcgactc tactctgaag acgagaatga cgtccacgct gcgagaacag ctgatccccc      1140
     tagaagacca cccatgggag cacacctgca ggcaactaag gaccacggcg gaggaaatac      1200
     tcggcctgca acaacgcgga agatcggact ggatatctga agggacctgg gacctgatta      1260
     gaaggaggaa ccacctgaag cctctggcgg accagctcac acagtaccgt gaggagtatc      1320
     acggactatg cagagcggtg aaaaggtcgg ccagaaagga caaaagagca cagctggata      1380
     gacttgcggc agacgcagaa cgagcagccg gcgagaacaa catgcgctcg ctataccagc      1440
     agattgcacg gttcgcagga acccatcaca aacagaacaa accagtcaga gatctagaag      1500
     gtaacctctt atccaatgat gacgcacaaa tccgaagatg gcgccaacac ttcatgggaa      1560
     ttagccacac cacatcacca aacgtggcca tagactacag gagcgttgtg ccgccaagtg      1620
     ggagtagcag gataccctct gcacccccga atgtaagaga aatcgtgaat gcaataaaga      1680
     agctgaagca caacagggca gctggcgaag acaacatacc agccgaattg cttcaagttg      1740
     acacccaact gatggctgaa atattgcatc cacatttctc acgcatatgg gaaggcgaga      1800
     cggtgccagc ctcctggaaa agcggaatca ttgtgaagct tcccaaaaaa ggcgacctta      1860
     gtgactgcaa caactggaga gggataacac tgctcaacac cagctacaag atcttagcta      1920
     cacttctgaa cgaacgcctc caggaaaaaa ttgagccaac aatccgagac gaacaggcag      1980
     gcttcagacc acacaggagt tgcgtagacc aggcaaatac actacgcata ataaccgagc      2040
     aagctgtgga atggagagcc ccgctttacc tcctgttcat cgacttcaag aaggcgttcg      2100
     actcagttga aagagcagca atatggcgag cacttgcaag aaaaggagta cctgcaaatc      2160
     tcatcgccat catcaaatcg atgtatgacg atgccaacct ggcggtactg cacaatggaa      2220
     aaactagtgc acctttccag acaaacaccg gaattcggca aggatgcccg ctgtcaccac      2280
     tcctcttcaa catcgtagtc gacgagttaa tgagcgaagt atgctcgtcc aagcgcggaa      2340
     ttacgtggaa cctcaccaga caccttgagg acttggacta cgcagacgac atctgtctca      2400
     tatcgcacag actcgacgac atacagagga aaagtgacga cctcgtcagg atagccagca      2460
     gcgtagggct cgagataaac atagcgaaaa caaaagctat gcgcttcaac cactccagcc      2520
     aaggaaacat caacataaat gggaacccaa tcgagttcat taccagtttc ccataccttg      2580
     gcaccatmat atccaacagt ggtggagtgg atgatgatgt ctccagtcgt cttggcaaag      2640
     cccgctcagc atttgggaga ttataccgca tatggagaga cmgacaaatc agccgacgaa      2700
     caaagctcag gatctacaat gcgtgtgtga aatccatact gctatacgga agtgagacat      2760
     ggctcgccac gaagaaaata acgcagaagc tacaggcttt cagcaacaaa tgcctgagag      2820
     tcatatgtgg ggtattctgg ccaaacagaa tagccaacac agaactgtgg cgcgttacag      2880
     acgagtcccc gattcacata caaataagga agaaaaaatg gatgtggata gggcacgctc      2940
     tcagaagaaa cccgagtagc atagtgagga tggcactaga ctggaacccc caaggaagca      3000
     ggcgagtwgg aaggccaaga gcaacctgga gaagaaccgc tcaccaagaa ctagcccaaa      3060
     taaacaccac atgggcaagt gcaaaacaga cagctcaaaa tagagttaga tggaaagctc      3120
     tcgtagaagc cctaagttcc cgagaggaat aaaaaggatt taaaaaaaaa aaaa            3174
//
ID   RTE-1_DSer  repbase;    DNA;    INV; 3243 BP.
XX
AC   .
XX
DT   11-OCT-2019 (Rel. 24.10, Created)
DT   11-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila serrata genome -
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3243
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 2046-2046 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. The consensus is ~98.6% identical
CC   to that of RTE-1_DAn.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..3209
FT                 /product="RTE-1_DSer_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NPPTENKSSVKEADEASERNRSKVDDHGTRKKDNDLR
FT                 VCTWNVRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQGCLKKKNCDIY
FT                 YSCHPERHEFGCGFVVGARLRRRVSHFLPINERLATIRITAKFFNISLICA
FT                 HAPTEEKDDVTKDAFYAELDRAYGRCPSHDIKILLGDFNAKVGREDIFGAT
FT                 VGQFSLHETTSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDRLTR
FT                 NQIDHVVIDARHASNVLDVRSCRGPNIDSDHYLVAAKIRTRLCVAKVARRG
FT                 LLRKLDIGKLQSQRTRDAFSTQVSGLLSRATPTPEDISNMWALISHSLRTS
FT                 AEEVIGFQRAPTRNPWYDQECRDATAAKDAAYRRTLQAGATRAVVEVYRSR
FT                 RRDEKRLFRRKKREQERRECESIESSRCRNEARNFYQRVKRLTQGFKTGGV
FT                 ACKDDDGNLVTDAEIVLRLWREHFSSLLAGSGYDDYGEYDPQTPIYGTDVD
FT                 VPTPSHAEVKVAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIW
FT                 LTESMPDDWNHSMICPILKKGDATLRTNYRGISLLPVAYKVLTSVLCENLK
FT                 PHAEALIGPYQCGFRPGKSTMDQIFTLRQILEKSYENQIDTYHLFVDYKAA
FT                 FDSPRRDRLYAAMSELGIPAKLIRLCMMTLSNTISSVRVGNDQSETFYTKC
FT                 GLRQGDSLSCMLFNILMESIIRKAGVHRTGTILTNRCVQLLGYADDIDIIG
FT                 RTKRDVTAAFGAIEKESAKVGLAVNMDKTKFMVCSSRESRRLDSQLSAGSH
FT                 SFEFVKEFIYLGSAISGTNDVSLEIKRRITLANRCYFGLSRHFNSRALSRP
FT                 TKITLYRTLILPVLLYGAECWTVVQSDAAALGVFERKILRKIFGPICVGDA
FT                 YRIRWNHELYELYGDVDIVSRVKIQRLRWLGHIARMEEDAPARKVFDAVIV
FT                 GKRRRGRPRIRWQDQVMEALSTSGVTNWRARAQDREAWRQIVQQAVTR"
XX
SQ   Sequence 3243 BP; 888 A; 770 C; 845 G; 740 T; 0 other;
     gggggggtat ataaggtaaa gtgtctgatt gcattcaact tggtgaatgc cagcatgatc        60
     cttatcactg ctctccccaa gccgacgcac tacctccacg tggttctccc tggattgtca       120
     ctcaacaccc gttgtttgac aaactaaagc gcgcgacgag agtcctagct cttcaaacta       180
     ggttgtggcg taggacttga aatccaccca cggaaaacaa atcttcagtg aaggaagcag       240
     atgaagcctc ggaacggaac cgatctaaag ttgacgacca tggcacacgt aaaaaggaca       300
     atgatttgag agtatgcact tggaatgtac gcacattgta cagaccaggt gctgctcaac       360
     aactagcaga taccctcaat aaatgtaggg ctgacatcac tgctatccag gaaatgcgat       420
     ggataggaca aggttgcctt aagaagaaga actgcgacat ttactacagc tgccatccag       480
     aacggcatga atttggctgt ggcttcgttg taggcgccag actgcggcgc cgggtctctc       540
     actttctgcc aataaacgag agacttgcaa cgatccgaat tactgccaaa ttcttcaaca       600
     tcagcctgat atgcgcgcat gccccaaccg aagaaaagga cgatgtcacc aaggatgctt       660
     tctatgcgga gctcgaccgg gcttatggcc gctgtccttc ccatgacatt aagatcctcc       720
     ttggggattt taatgccaag gtagggcgag aagacatctt tggtgccacc gtcgggcaat       780
     ttagtctaca cgagaccacc tcgagcaatg gtctcagatt aataggcttt gctgcagcgc       840
     ataatatggt agttcgtagt actgggtttc gtcatttgga catacacaag gcatcatggc       900
     tctctcctga tcgactgacc agaaatcaga tcgatcatgt tgtgatcgat gcaaggcatg       960
     catctaacgt actcgacgtg cgatcctgtc ggggtcccaa catcgactcc gaccattatc      1020
     ttgttgcagc taagattcgc acacggctat gtgttgcgaa ggttgcacgt cgaggactgt      1080
     tgagaaagct ggacatcggg aagctgcaat cacaacggac aagggatgca ttctccactc      1140
     aagtctcagg cctgctgagc cgagcaactc caacacctga agacatcagc aatatgtggg      1200
     cactcatatc ccactccctg cgaacttctg cagaagaggt catcggattc caacgtgccc      1260
     caacgaggaa tccatggtac gaccaggagt gtcgcgacgc aacagctgca aaagacgccg      1320
     cctacagaag aacactgcaa gctggggcca caagggctgt tgtcgaggtc tacaggtcaa      1380
     ggaggagaga tgagaaacgc ctcttcagac gcaagaagag agaacaggag aggcgtgagt      1440
     gtgagagcat tgagagcagc agatgccgga atgaagctcg taacttctac cagagggtta      1500
     agcgtctgac ccaaggtttt aagactggag gagttgcgtg caaggacgat gacggaaacc      1560
     tagtcactga tgcagagatt gtgctgaggt tatggaggga gcacttctca agtctattag      1620
     ctggctctgg ctatgatgac tatggagagt atgatccaca aaccccaatc tatggtactg      1680
     atgtggacgt accgacccca agccatgccg aagtcaaggt tgcaatccaa cgacttaaaa      1740
     acaataaatc cgcaggtgct gacggcctgc cggctgaatt gtttaaggct gctggtgata      1800
     tgttggtagg gagcatgcac caactaatca gcaagatatg gctaacggag agcatgcccg      1860
     acgattggaa ccacagcatg atctgtccta tcctgaagaa gggtgatgcc acattgcgca      1920
     ccaattaccg tggcattagt cttcttccag tcgcatacaa ggtccttacg agcgtactat      1980
     gtgaaaacct gaaaccccat gctgaagcac tgattggacc ttatcagtgc gggttcaggc      2040
     ctggcaaatc cactatggac cagattttca ccttgcgcca aatcctggag aagtcctacg      2100
     aaaatcagat cgacacatat cacctcttcg tcgattacaa ggctgcattc gatagtcccc      2160
     ggcgagatcg cctgtatgcc gccatgtctg agcttggtat accagcaaag ctaatacggc      2220
     tttgcatgat gacattgagc aacaccatca gctctgtcag ggtaggaaat gaccaatccg      2280
     aaacctttta taccaagtgt ggtctcagac aaggcgactc gctgtcttgt atgctcttca      2340
     acattctaat ggagagtatt ataaggaagg ctggagtgca tcggacgggc actattctaa      2400
     caaacagatg tgtccaactc cttggctacg ctgatgatat tgatatcatt ggccgaacca      2460
     agcgtgatgt tacagcagcc ttcggggcta ttgaaaaaga gtcagctaaa gtaggactgg      2520
     cagttaacat ggataagaca aagtttatgg tgtgctctag cagggaatcg cggcgtcttg      2580
     attcccagct atctgcagga agccatagct ttgagttcgt gaaggaattc atttaccttg      2640
     gatctgcaat aagtggcaca aatgatgtca gcctggagat taagcggaga atcacacttg      2700
     ccaacaggtg ctactttggg ctcagtaggc actttaacag tagagctctc tctcgaccga      2760
     caaaaataac actctacagg acgctcattc ttccagtact cttatatggt gcggagtgct      2820
     ggacagtggt gcaatccgat gcagctgctc ttggagtgtt cgagagaaag attctccgca      2880
     aaatctttgg tccaatctgc gttggcgatg cttatcgcat cagatggaac cacgagctgt      2940
     atgagctgta cggggatgtt gatatagtaa gccgagtcaa aattcaaaga ctccgctggc      3000
     tgggtcacat cgcccgcatg gaagaagacg ctccggctcg taaggtattt gatgcggtaa      3060
     tcgtcggaaa acggaggaga ggacgacccc ggatacgttg gcaggaccag gtgatggaag      3120
     ccctgtctac atctggtgtt accaactggc gagcgcgggc ccaggacagg gaagcgtgga      3180
     ggcagattgt gcaacaggct gtgacccgat agggttgtga tggccattaa taataataat      3240
     aaa                                                                    3243
//
ID   RTE-1_DT    repbase;    DNA;    INV; 3220 BP.
XX
AC   .
XX
DT   30-MAY-2012 (Rel. 17.08, Created)
DT   30-MAY-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3220
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1719-1719 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~98% identical to RTE-2_DBp.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..572
FT                 /product="RTE-1_DT_1p"
FT                 /translation="GENGGSIQVKVSDCIQLGERQHDSCHCFXQADALPPR
FT                 GSPWIXLKRATRVLTLQTRFWRRTWNPXMXNTISVKEAREASERNRSNVDD
FT                 HSKRKKDNDLRVCTWNVRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQ
FT                 GCIKEKNCDIYYSCHPERHEFGCGCQAAAPSLSLYANKRENCNDPNYCQIL
FT                 "
FT   CDS           475..3183
FT                 /product="RTE-1_DT_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNLVVVARLRRRVSHFMPTNERIATIRITAKFFNISL
FT                 ICAHAPTEEKDDATKDAFYAELDRAYGRCPSHDIRILIGDFNAKVGREDIF
FT                 GATVGRFSLHEATSSSGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDR
FT                 LTRNQIDHVVIDARHTSSILDVRSCRGPNIDSDHYLVAAKIRTRLCVAKIA
FT                 RRSALRRLDIGKLQSQQAKDAFSTHVSGLLSRAPLIPEDISDMWALISHSL
FT                 RASAEEVLGFQRLLTRNPWYDQECHDATAAKDAAYRRTLQAGATRAIVDVY
FT                 RSRRRDEKRLFRRKKKEQERRECECIESSRCRNEARNFYQRVKRLTQGFRT
FT                 GGVACRDDDGNLVTEAEVVLRLWRDHFSSLLSGSSTDSEDYDPRTPIYGTD
FT                 IEVPIPSHIEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISK
FT                 IWLTESMPEDWNLSMICPILKKGDATVRTNYRGISLLPVAYKVLTSVLCKR
FT                 LKPHAEALIGPYQCGFRPGKSTVDQIFTLRQILEKSYENQIDRYHLFADYK
FT                 AAFDSPRRDRLYAXMSELGIPAKLTRLCRMTLSNTISSVKVGSGQSETFTT
FT                 KCGLRQGDSLSCMLFNILMESIIRKAGVHRTGTILTNRCVQLLGYADDIDI
FT                 IGRTKRDVTGAFGAIEKESAKVGLAVNREKTKFMVCSSRESRRLDSQLTAE
FT                 NYSFGSVKEFIYLGTAITSTNDVSLEIKRRITLANRCYFGLSRQFNSRALS
FT                 RRTKTTLYKTLILPVLLYGAECWTVTQSDAAALGVFERKILRKIFGPICVD
FT                 DVYRLRYNHELYELYGDVDVASRVKSQRLRWLGHIARMDEDAPARKVFDAV
FT                 IVGTRRRGRPRTRWQDQVMETLSTLGVTNWRRRAQDRDAWRHIALQAETR"
XX
SQ   Sequence 3220 BP; 898 A; 751 C; 841 G; 724 T; 6 other;
     tgggggagaa tggggggagc atacaggtca aagtgtctga ttgcattcaa cttggtgaac        60
     gccagcatga ttcctgtcac tgctttsttc aagccgacgc actwcctcca cgtggttctc       120
     cctggatcma actaaagcgc gcgacgagag tcctaactct acaaactagg ttttggcgta       180
     ggacttggaa tccacmcatg waaaacacaa tttcagtgaa ggaagcaaga gaagcctcgg       240
     aaaggaaccg atctaacgtt gacgaccata gcaagcgtaa aaaggacaat gatttgagag       300
     tatgcacctg gaacgtacga acattgtaca gacctggtgc tgctcaacaa ctagcagata       360
     ccctcaacaa atgtagggct gacatcactg ctatccagga aatgcgatgg ataggacaag       420
     gctgcataaa ggagaagaac tgtgacattt actacagctg ccatccagaa cggcatgaat       480
     ttggttgtgg ttgccaggct gcggcgccga gtctctcact ttatgccaac aaacgagaga       540
     attgcaacga tccgaattac tgccaaattc tttaacatca gcctgatatg cgcacatgcc       600
     ccaacggagg aaaaggatga tgccaccaag gacgctttct atgcggagct cgaccgagct       660
     tatggccgct gtccttccca tgacattaga attctcatcg gcgattttaa tgccaaggta       720
     ggacgagaag acatctttgg tgccaccgtc gggcgattta gtctacatga ggccacctcg       780
     agcagtggtc tcagattaat aggctttgca gctgcgcata atatggtagt tcgtagtact       840
     ggattccgtc atttggacat ccataaggca tcttggctct ctcccgatcg actgaccaga       900
     aatcagattg atcatgttgt gatcgatgca aggcacacat ctagtatact cgacgtgcga       960
     tcctgtcggg gccccaacat cgactccgac cattatcttg ttgcagctaa gattcgcaca      1020
     cggctatgtg tggcgaagat tgcacgtcga agtgcgttaa gaaggctgga catcggaaag      1080
     ctgcaatcac aacaggcgaa agatgcattc tccactcacg tctcggggct attaagccga      1140
     gcacctttaa tacctgaaga cataagcgat atgtgggcgc tcatatccca ctccctgcga      1200
     gcttcggcag aagaagtgct tggattccag cgtcttctaa caaggaatcc atggtacgat      1260
     caggagtgtc atgacgcaac agctgcaaag gacgccgcct acagaagaac actgcaggct      1320
     ggggcgacac gagctattgt ggatgtctac aggtcgagaa gaagagacga aaaacgcctt      1380
     ttcagacgca agaagaaaga gcaggaaagg cgagagtgtg agtgcataga gagcagcaga      1440
     tgcaggaatg aagcacgtaa cttctaccag agggtcaagc gtctgaccca aggatttagg      1500
     actggtggag tggcgtgcag ggacgatgat ggaaatcttg tcacagaagc agaggtcgtg      1560
     ctgaggttat ggagggatca cttctcgagt ctgttatctg gctcaagcac agactctgaa      1620
     gactatgatc cacgaacccc aatctatggc actgatattg aagtgccaat cccaagtcat      1680
     atcgaagtca aggatgcaat ccaacggctt aaaaacaaca agtctgcagg tgctgacggc      1740
     ctgccggcag agttgtttaa ggcagctggt gatatgttgg tagggagcat gcaccaacta      1800
     atcagcaaga tatggctcac ggagagcatg cccgaagatt ggaacctcag catgatctgt      1860
     cccatcctga agaagggtga tgccacggtg cgcaccaact accgcggaat tagtcttctt      1920
     ccagttgcat acaaggtcct aacgagcgta ttgtgtaaaa gactgaaacc ccatgctgaa      1980
     gcactgattg gaccttatca gtgcgggttc aggcctggca agtccactgt tgaccagatt      2040
     ttcaccttgc gccaaatcct ggagaagtcc tacgaaaacc agatcgacag gtaccatctt      2100
     ttcgccgact ataaggccgc atttgatagc ccccggcgag atcgcctata tgccsccatg      2160
     tctgagcttg gaataccagc aaagctgact agactttgca gaatgacatt gagcaacacc      2220
     atcagctctg tcaaggtagg aagtggccaa tccgaaacct ttactaccaa gtgtggcctc      2280
     agacaaggtg actcgctgtc ttgtatgctc ttcaatattc taatggagag tattataaga      2340
     aaggctggtg tgcatcggac gggcacgata ttaaccaaca gatgtgtcca gctccttggt      2400
     tacgctgatg atattgatat cattggccgc accaagcgtg atgtcacagg agccttcggg      2460
     gctattgaaa aggaatcagc aaaagtagga ctagcagtga atagggagaa aacaaagttt      2520
     atggtgtgct ctagcagaga atcgcggcgt cttgattctc agctgactgc agagaactat      2580
     agctttgggt ccgtcaagga gttcatctac ctaggcactg ctataacaag cacaaatgat      2640
     gtcagtctgg agattaagcg gagaataaca cttgccaaca ggtgttactt tgggctcagt      2700
     aggcagttca atagtagagc tctctctcga cgcacaaaaa ccacactcta caagacgctc      2760
     attcttccag tacttctata tggtgcggag tgctggacag tgacgcagtc agatgcagct      2820
     gctcttggag tgttcgagag aaaaattctt cgcaaaatct ttggtccaat ctgcgtggac      2880
     gatgtttatc gcctcagata caaccacgag ctgtatgagc tgtacggtga tgttgacgta      2940
     gccagccgag tgaaatctca aagacttcgc tggctgggcc acattgcccg tatggatgaa      3000
     gacgctccgg ctcgtaaggt gtttgatgcg gtgattgttg ggacacgaag gagaggacga      3060
     ccccgaacgc gttggcaaga tcaggtgatg gaaaccctgt ccacacttgg tgttaccaac      3120
     tggcgaaggc gcgcccagga cagagacgcg tggaggcaca ttgcgcttca ggccgagacc      3180
     cgataaaagg gttgtcatgg ccatataata ataataataa                            3220
//
ID   RTE-1_DYa   repbase;    DNA;    INV; 2363 BP.
XX
AC   .
XX
DT   16-MAY-2009 (Rel. 14.06, Created)
DT   16-MAY-2009 (Rel. 14.06, Last updated, Version 2)
XX
DE   RTE-type sequence: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2363
RA   Jurka J.;
RT   "LINE-type retrotransposon families from fruit fly.";
RL   Repbase Reports 9(6), 1156-1156 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           301..1503
FT                 /product="RTE-1_DYa_1p"
FT                 /translation="MTSTLREQLIPLEDHPWEHTCRQLRTAAEQIIGLQQR
FT                 GRADWISEGTWDLIRRRNNLKPLADQLTQNRDEYRELCRAVKRAARKDKRA
FT                 LLDRLATDAERAAGENNMRSLYQQIARIAGTHHRRNQPVRDLEGNLLSNDD
FT                 AQIRRWRQHFMGISHTTSPNVATDYRSIAPPSGNTRIPSTPPHVREIVNAI
FT                 KKLKRNRAAGEDNIPAELLQVDTQLMADTLHPHFARIWEGETVPDSWKSGI
FT                 IVKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLQEKIEPTIRDEQAG
FT                 FRPHRSCVDQANTLRIITEQAVEWRAPLYLLFIDFKKAFDSVERAAIWRSL
FT                 ARKGVPANLIAIIKSMYDDANLAVLHNGKQVNLSRRTPEFGKDALYHLYSS
FT                 TSWSTS*"
FT   CDS           1503..2345
FT                 /product="RTE-1_DYa_2p"
FT                 /translation="MSEVCSSKRGITWSLTRHLEDLDYADDICLISHRLGD
FT                 IQRKSDNLVRIASSVGLEINVAKTKAMRFNHSNQGNIIIHGNPIEFVNSFP
FT                 YLGTIISNNGGVDDDVSSRLGKARSAFGRLYRIWRNREISRRTKLRIYNAC
FT                 VKSILLYGSETWLATKKVTQKLQVFSNKCLRIICGIFWPNRIANTELWRVT
FT                 SEPPIHTQIRKKKWMWIGHALRRNPSSIVRMALDWNPQGSRRVGRPRATWR
FT                 RTAQQELAQINITWENAKQTAQNRVRWKALVEALSSREE*"
XX
SQ   Sequence 2363 BP; 774 A; 600 C; 577 G; 411 T; 1 other;
     gcaaccctca gcaagacgcg gcaaggtgac attaaccagc tattgcrgct attcccacac        60
     atccactact tggacatctc ctagtttcga ccacatttgc attagcagga aatggagaca       120
     ctcactactg gacgtacgga acaaaagggg agcatctata gacagtgatc atgagttggt       180
     cattggagaa cttgaaataa agttgaaccg caactactca aggaacactg ataacagcca       240
     acaccgacga gcgcccccct gaacctgcac ctccttagcg actccactct gaggacgaga       300
     atgacgtcca cattgcggga acaactgatc cccctagaag accacccatg ggagcacacc       360
     tgcagacagc taaggaccgc agctgagcaa ataattgggc tgcaacaacg cggaagagca       420
     gactggatat ctgaagggac ctgggacctg attagaagga ggaacaatct gaagcctctg       480
     gcggaccagc tcacacagaa tcgtgatgaa tatcgcgaac tgtgcagagc tgtgaaaaga       540
     gcggccagaa aggacaaacg agcgctactg gatagacttg cgacagacgc agaacgagca       600
     gccggcgaga acaacatgcg ctcgttatac cagcagattg cacggattgc cggaacccac       660
     cacagacgga accagccagt cagagaccta gaaggcaacc tcttatccaa tgatgatgca       720
     cagatccgga ggtggcgcca acacttcatg ggaattagcc acaccacatc accaaacgtg       780
     gctacggact atagaagcat tgcgccacca agtgggaata ccaggatacc ctctacaccc       840
     ccgcatgtaa gagagattgt gaatgcaata aagaagctaa agcgcaacag ggcagccggc       900
     gaggacaaca taccagccga actgcttcaa gttgacactc agctgatggc tgatacgctg       960
     catccacatt tcgcacgcat atgggaaggc gagactgtac ctgactcctg gaaaagcgga      1020
     atcatcgtga agctccccaa gaaaggcgac cttagcgact gcaacaactg gagagggata      1080
     acactgctca acactagcta taaaatccta gctacactgc tgaacgaacg cctccaggaa      1140
     aaaatcgagc caacaatccg agacgaacag gcaggcttca gaccacacag gagttgcgta      1200
     gatcaggcaa acacactacg cataattacc gagcaagctg tggaatggag agccccgctt      1260
     tacctcctgt tcatcgactt caagaaggcg ttcgactcag ttgaaagggc agcaatatgg      1320
     cgatcacttg caaggaaagg agtacctgcg aacctcatcg ctatcatcaa atcgatgtat      1380
     gacgatgcca acttggcggt actgcacaac ggaaaacaag tgaacctttc cagacgaaca      1440
     ccggaattcg gcaaggatgc cctctatcac ctctactctt caacatcgtg gtcgacgagt      1500
     taatgagcga agtatgctcg tccaagcgcg gaattacgtg gagcctcacc agacaccttg      1560
     aggacttgga ctatgcagac gacatctgtc ttatctctca tagactcggc gatatacaga      1620
     ggaaaagtga taacctcgtc aggatagcca gcagcgtcgg actcgagata aacgtagcaa      1680
     aaacaaaagc tatgcgattc aaccactcca accaaggaaa catcatcata catgggaacc      1740
     caatcgagtt cgtcaacagt ttcccatacc ttggcaccat aatatccaac aatggaggag      1800
     tggatgatga tgtctcgagt cgtcttggca aagcccgctc agcatttggg agactatacc      1860
     gcatttggag aaacagagaa ataagccggc gaacaaagct ccggatctac aatgcgtgtg      1920
     tgaaatccat actgctatac ggaagtgaga catggctcgc aacgaagaaa gtaacgcaga      1980
     aactgcaggt tttcagcaac aaatgcctga gaatcatatg tgggatattc tggccaaaca      2040
     gaatagccaa cacagagctg tggcgcgtta cgagcgagcc cccgatacac acccaaataa      2100
     ggaagaagaa atggatgtgg atagggcacg ctctcaggag aaaccctagt agcatagtaa      2160
     ggatggcact ggactggaac ccccaaggaa gcaggagggt aggaaggcca agagcaacat      2220
     ggagaagaac cgctcaacaa gaacttgccc aaataaacat cacatgggaa aatgctaaac      2280
     agacagcaca aaacagagtt agatggaagg ctctcgtaga agccctaagt tcccgagagg      2340
     aataagaagg aattaaaaaa aaa                                              2363
//
ID   RTE-1_HMe   repbase;    DNA;    INV; 3701 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.08, Created)
DT   04-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Heliconius melpomene melpomene
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_HMe.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3701
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Heliconius melpomene melpomene
RT   genome.";
RL   Repbase Reports 12(8), 1729-1729 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. Low-copy. 5'-end not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           616..3636
FT                 /product="RTE-1_HMe_2p"
FT                 /translation="MEAHLKRSRSPYEPFSNRRRTASGACGEKLVTGHEAV
FT                 GNQALRGNSDTGITMKLRTNQKIGTWNVRGLLDPGKLTILEREITRNGMNI
FT                 CGLSETHWQNSGHIFTDSHVVYFSGNESTSRNGVAFLISKHQNNCVIGYEP
FT                 VSDRIISLKLRATPVNLNLIQVYAPTSTSSDEVIEDFYTAIETTIAKIPNR
FT                 ELLLILGDFNAKIGAKSGHLGDCVGNFGLGKRNERGERLIQFASENNFTIA
FT                 NSCFQHHHRRLYTWTSPDGKQRNQIDYILIRRRWRTSVQNTHTLPGADCGS
FT                 DHQLLMSKLRVKLRAARIKKAQKRLEVLDTPKFLKSVQNNWEKWTTAEHRE
FT                 ETINTLWDQAKQLISNAVEDSNPPVTKHKRQHWMTDVTLSLIDERREKKAT
FT                 GCDVKDLNRLSSQIQAQCRRDHNTYLNSICNEIESHAAKYESKDLYRKIRF
FT                 ITKSLSPKSWAIEDNDGKIVTELDKISELWKTYCQXLFQDQQSRNFSPTEP
FT                 HKGELEPDILLSEVKAAIKHLKDKKAAGRDGIPIETIKALGEYGTRIFHTI
FT                 CNKIWQTGVWPTEWTHTVLTPLHKKGSTKKCGNYRLIALISHASKILLHIL
FT                 NERLKSYLSREIAPEQAGFVKGKGTREQILIVRQVVEKAREFNKPVYICFV
FT                 DFSKAFDSVKWPVLWNTLLQMGTPKXLVHLLRQLYEGGTASVRTDGILSSN
FT                 FHPSVGVRQGCIISPLLFNAYTELIMRITLENWTDGIAVGGYNIANLRYAD
FT                 DTTLFASSIQHMEELLQKMEYVSLQFGLKVNRSKTKMMIVDRANNNSPEVT
FT                 HIANCEVVQSYIYLGTLITNKGGCMEEIKRRMAIARNAVERLRNIWKNRKI
FT                 TKNTKMRLIRILVFPIFLYAAETWTVREAEKKKIDAMEMWCWRKMLGISWT
FT                 EFRSNVSILQELGIKERLSALVETRMLKFFGHISRKGNDSIERLVVQGRVN
FT                 GTRPRGRSPMRWTDQVKSAVGGKLHECTRMATNGRKWRETVARITKAKNVT
FT                 T"
XX
SQ   Sequence 3701 BP; 1184 A; 797 C; 855 G; 861 T; 4 other;
     gtaggtaaag gtgaggcggc gttgagctcc gtcagctcat tgtctgtgga tggtacttga        60
     cttgatgtac tgcgaggtta aaaattcggc ggcaggtaac aagtcgaata gttttccaga       120
     acactcccca tgatatatgc agtaaggaac gcacagcgag gagacgtctc tacgcaaagc       180
     caaagtgtca agcctgtggc agatcattgg gtccccaacg attcgaacgg ctttacgttg       240
     tatgcgatca aatggaacaa gctgatactg ggtgcaccag tccagagatg agaacagtac       300
     tccattataa ggctgaaatt gggcctgaat tgggcaattg gggggtaagg gggagaacgg       360
     acttaacatc tttccgaccc caattgtcaa cctcacctgc tcgcactggc tattcgtatg       420
     attagctggt ggcggcagct tcgagttgtc gcggtactcc ctgctggata acggacgagg       480
     ctctggcgac cgaccagtgg cggtataacc acacacacac aggctacagc ggccttgggg       540
     tataaataac cccaaaaatg tctggtgcag aaggcaaggg gaaaccactg cactatttct       600
     cccaagaaag tcatcatgga agcacattta aaaagatcac gatcgccata cgaaccgttt       660
     agcaaccggc gccgcactgc gtccggggcg tgcggtgaga aattggttac cggccacgag       720
     gcagtaggaa accaggccct tcgtggaaac tcagatactg gaataactat gaaactccga       780
     actaaccaga agataggcac atggaatgtt cgaggccttc tcgatcctgg aaaattgact       840
     atcttagaac gagagattac cagaaatggt atgaatatct gtggtctgag cgaaacacac       900
     tggcagaata gcggacacat atttactgac agccatgtcg tttatttttc tggtaatgag       960
     agcaccagtc gtaatggagt agcgttcctc atttccaaac accaaaacaa ctgtgtaatt      1020
     ggttacgaac ctgtaagtga ccgtataatt tctttaaaac tcagagcaac tcctgtaaac      1080
     ctaaatctca tccaagttta cgcccctacc agcacatcca gtgacgaggt catagaggac      1140
     ttttacactg ctattgagac taccatcgcc aaaatcccca atagagaatt acttttaatt      1200
     ttaggtgatt tcaacgctaa gattggagct aaatctggtc atcttggtga ctgtgtgggt      1260
     aactttgggt taggaaaacg caatgaacga ggcgaacggt taatccaatt tgcctcagaa      1320
     aataacttca cgattgcaaa tagttgtttc caacaccatc accgaagatt atacacatgg      1380
     acctctcctg atggaaagca gcgtaatcag attgattata ttctcatacg gaggcgatgg      1440
     agaacatctg ttcaaaatac ccacacttta ccgggagcgg actgtggatc agatcaccaa      1500
     ctgttgatgt ctaaactgcg ggtaaagtta agagccgcca gaatcaaaaa agcacagaag      1560
     cgactagaag ttctagatac cccaaagttc ctgaaatctg ttcaaaacaa ctgggagaaa      1620
     tggactaccg cagaacatcg cgaagaaacc attaacacac tctgggatca agccaaacag      1680
     cttatctcaa acgctgttga agactcaaat ccaccagtga cgaagcacaa aaggcaacat      1740
     tggatgacag atgttactct gtcactaata gatgaaaggc gcgagaagaa agccacaggt      1800
     tgcgacgtaa aggacttgaa tcgactatca tctcaaattc aagcgcagtg tagacgagat      1860
     cataacacct atctcaatag catatgcaat gaaattgaaa gtcacgccgc aaaatatgaa      1920
     tccaaagatt tatatcgcaa gattcgtttc atcaccaaat cattgtcccc taaatcttgg      1980
     gctattgaag acaatgatgg caaaatagtt actgaactcg ataagatctc agagttatgg      2040
     aaaacctatt gccagngtct atttcaggac caacaatcgc gcaatttttc accaacagaa      2100
     ccncataaag gagaattaga gccggatata ctcttgtctg aagtaaaggc tgccatcaaa      2160
     catctnaagg ataaaaaggc tgcaggaaga gatggaatac ctatcgaaac tatcaaagcc      2220
     ttaggtgaat atggtactcg aatttttcat acaatttgta ataagatatg gcagacagga      2280
     gtatggccaa ccgaatggac tcacacagtt cttactcctt tacataaaaa gggttctaca      2340
     aaaaaatgtg gcaattaccg tcttattgca cttatatcac acgcaagcaa aatattgcta      2400
     catatcctga atgagcgttt gaagtcctac ttgtcaaggg aaattgcgcc agagcaagct      2460
     ggatttgtga aaggtaaagg tacgagggaa caaattctga tcgtacgcca agttgtagag      2520
     aaagcgcggg aatttaacaa acccgtttac atctgctttg tagatttttc caaagcgttc      2580
     gattctgtga aatggccagt tttatggaac actttactgc aaatgggtac accaaagcan      2640
     ttagtacacc ttcttagaca gttatacgaa ggaggaactg cctcagtgag aacggacggc      2700
     atactatcaa gcaacttcca tccaagcgtg ggtgtccgtc aagggtgcat aatatcaccg      2760
     ctcctcttta acgcttacac tgagctcata atgcgtatca cccttgagaa ctggacagat      2820
     ggtatagcgg ttggtggcta caatattgca aacttgcgtt acgccgacga cacaacctta      2880
     ttcgcctcca gtattcagca tatggaagaa ctgcttcaaa agatggaata tgtcagcctt      2940
     cagtttggat taaaggtcaa tcgcagtaaa acaaagatga tgattgtgga tcgcgccaac      3000
     aataattcgc cggaagtgac tcatattgcg aattgtgaag ttgtccagtc ctacatatac      3060
     cttgggactt taatcacaaa caaaggcgga tgcatggagg aaataaaacg acgcatggct      3120
     attgccagaa acgctgtgga aaggcttagg aacatatgga agaataggaa aatcactaaa      3180
     aacacaaaaa tgcgattgat ccgaatactc gtcttcccta tttttctgta tgccgccgag      3240
     acatggaccg tgcgggaagc ggaaaagaag aagatcgatg ccatggagat gtggtgctgg      3300
     aggaagatgc tcgggatatc gtggacagag ttccgttcca atgtgtccat actccaagaa      3360
     cttggcatca aagagcgact atcagctctt gtagaaaccc gcatgcttaa gtttttcggt      3420
     cacatctcca gaaaaggaaa cgactccata gagcgactcg tggtgcaagg cagagtaaat      3480
     ggtaccagac caagaggtag atcacccatg cgatggactg accaagtaaa atcagctgtg      3540
     ggcggtaaat tgcatgagtg cactagaatg gcgaccaacg gaaggaaatg gcgtgaaact      3600
     gtggcaagaa taacgaaagc caaaaacgtg actacgtgac ggccacgacc gctctgtcaa      3660
     gagcgtaacg actgagaaga agatgtatac acatataaat a                          3701
//
ID   RTE-1_NVi   repbase;    DNA;    INV; 2812 BP.
XX
AC   .
XX
DT   16-FEB-2009 (Rel. 14.02, Created)
DT   16-FEB-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   Non-ltr retrotransposon: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-2812
RA   Jurka J.;
RT   "LINE retrotransposons from the parasitic wasp Nasonia
RT   vitripennis.";
RL   Repbase Reports 9(2), 485-485 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           743..2806
FT                 /product="RTE-1_NVi_1p"
FT                 /translation="MTNRIAYGGTSKKTVKEAANKVLGKKKKPKSKPWFDE
FT                 ECELWFERRKKAKLDSLHNRSDRTVEEYSNVRKQAGAIYRNKKREYQKNLI
FT                 RRIETNSKENNPREMYRGINAIRKGFRSRAQLMKDENGDLVTNDNELLSLW
FT                 KNYFDKLLNVHENSEELGDEIHTAELHVEEPSYQEVEAAIKKLKNNKAAGN
FT                 DSIPAELLKYGGVELTFKIYKLVCAIWKNETIPENWKESIIIPIFKKGDKT
FT                 DCNNYRGISLLATCYKVLSNVIQARLTPFAEDIVGDYQCGFRRNRSTSDQM
FT                 FTIRQLLEKKWEFCETIHQLFIDFKKAYDSIKRSKMYQILVLLGVPKKLVR
FT                 LIQICLNGSTGKVRVGGNVSEPFTIRDGLKQGDGLSTVLFNLTLEYVVRKM
FT                 QVSQLGATLNGTTQILGYADDLDILGDCRETVARNAEILIKAAEYTGLEVS
FT                 ESKTKYMIVDKLGICRGEGDLRVGNFTFEKVSEFRYLGTTINDRNEINVEI
FT                 NKRLHSGNACFYAVSNLLKSRLLSKNVKIRIYRTIILPVVLYGCETWALTK
FT                 QADNRFRVFENKVLRKIYGPKKDEETGEWRRLHNDELHNLYASPNINRIIK
FT                 SRRLGWAGHVARMGDDRTAARVMKGRPMVTRPLGRPRRRWEDNVKADLVEI
FT                 GRVGVDRRGASWVGLTQDRAAWKACVDEAMNFRVPNAT*"
XX
SQ   Sequence 2812 BP; 1000 A; 485 C; 722 G; 605 T; 0 other;
     atggcggagt actagcatcg ggtaacttca cgtacctgta tgggagcggg ggatccctag        60
     gcaccggatt tctcgtaagc aaaagcatca tacattcggt taaaagtttc aaatccgtca       120
     atgataggct ctcgtacatc atcatcgaag gtgaatggta tagatatgta tttattaatg       180
     tacactgtcc tacggaggac aaagaagaag aagctaagga tctctattac gaaactttag       240
     agcaggtaat cgaccagttc gcgtcttacg acacaagaat agtattaggc gatttcaatg       300
     ctaaaatagg tagggaggaa atgtttaggc ctactatagg gaaggaaagc ctgcacgaag       360
     ccagcaatga taacggtatt agggtcataa atttcgcggc agcaaaagat cttataatca       420
     aaactacgtg ttttaagcac aaggacatac acaaagcaac gtggacatcg ccggacgggg       480
     ccacacagaa ccaaattgat cattttctca ttgaaaaaag acgtaagggc ttatagaggg       540
     gcagatagcg actcggacca cttcctagta gtagccaaat taagagctag attagtagcg       600
     aatcaaaata gtaagcgaac aaacaaggta gaaagcttcg atattgaaaa gctacgagat       660
     agaacagagc gaattaggta ccagatagaa attaataaca ggtttcaggc acttgaagaa       720
     gcaaacacat cgccggaggg gaatgacgaa ccgaatagct tatgggggga catcgaaaaa       780
     aacggtaaaa gaggccgcga acaaagtact gggtaaaaag aaaaagccaa agagcaaacc       840
     atggtttgac gaagagtgcg aactctggtt tgaaaggcgc aaaaaggcta aattagatag       900
     cttacacaat agaagcgata ggaccgtaga agagtattct aacgtaagga aacaggcggg       960
     cgcgatctac agaaataaga agcgggagta tcaaaagaat cttattagga gaatagaaac      1020
     taacagtaag gaaaataacc cccgcgaaat gtacagaggg attaacgcca tcagaaaggg      1080
     ttttaggagt agagcgcaat tgatgaagga cgaaaacggg gacctcgtaa caaatgacaa      1140
     cgaattactg tcgctgtgga aaaactattt cgataaatta ttaaacgtgc acgaaaatag      1200
     cgaagaatta ggggacgaaa ttcacactgc tgaactccac gtggaggaac cgagctacca      1260
     agaagtagag gccgcgatta aaaaactaaa aaacaacaaa gcagcgggaa atgactctat      1320
     accagctgag ttactcaaat atgggggcgt cgagcttact tttaaaatct ataaactagt      1380
     atgtgccatc tggaaaaatg aaacaatacc cgaaaattgg aaggaatcta tcattatacc      1440
     gatttttaaa aagggggata agacagactg caataactat aggggtatct cacttttagc      1500
     aacgtgctac aaagttctgt caaacgtaat acaagctaga ctcactccat tcgcggaaga      1560
     tatagtagga gattatcagt gcggatttcg gcgcaacaga tcgacgagcg atcaaatgtt      1620
     taccataaga cagttgttag agaaaaagtg ggaattttgc gaaaccatac accaactatt      1680
     tatagatttt aaaaaagcgt acgattctat taagcgaagc aaaatgtatc aaattctagt      1740
     acttctcggt gtaccaaaaa aactcgtgag attgattcaa atatgtctga acggaagcac      1800
     gggaaaggtc cgagtaggcg gtaatgtatc agaacccttc acgatacgcg atggtttaaa      1860
     acaaggggat gggctctcta cggtgctgtt caacttaacg ttagagtatg tcgttagaaa      1920
     aatgcaggtt agccagctgg gcgcaacgct taatggaaca acgcagatac taggctacgc      1980
     agatgatttg gatatactgg gggattgtag ggaaacggta gcaagaaacg cggaaatcct      2040
     cataaaagcg gcggagtata cagggttaga agtgagtgaa tcaaaaacaa agtacatgat      2100
     tgtggataaa ctaggcatct gcagagggga gggagatctc agagttggga attttacttt      2160
     tgaaaaggtt agcgaattca ggtatctggg tacgaccata aatgatagaa acgagattaa      2220
     tgtcgaaata aacaagagac tccattcggg taatgcttgc ttctacgccg tgagtaattt      2280
     acttaagtcg aggctgttgt ctaaaaacgt taaaataaga atatacagga caataatact      2340
     gccggtggtt ctgtacgggt gcgaaacgtg ggctctcact aagcaggcgg acaaccgttt      2400
     tagggtattt gaaaataaag tcttgcgaaa aatatacggg ccgaagaaag atgaggaaac      2460
     cggggaatgg aggagactac acaatgatga gttacacaat ctgtacgcgt caccaaatat      2520
     taacagaata ataaaatcac gcagattggg atgggcaggg cacgtagcga gaatgggaga      2580
     cgaccgtacg gcagcgcgtg tcatgaaggg caggccgatg gtaacgcgac ctctaggtag      2640
     acctagacgc agatgggagg acaacgtaaa agcggatcta gtagaaatag gacgggtggg      2700
     tgtcgatcgg aggggtgcat cttgggtggg gttgacacaa gatagggcag cgtggaaggc      2760
     ttgcgtagat gaggcgatga actttcgagt tccaaatgcc acttaaaaaa aa              2812
//
ID   RTE-1_PBa   repbase;    DNA;    INV; 1895 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   non-LTR retrotransposon from the Pogonomyrmex barbatus genome.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-1895
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 756-756 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~82% identical to the consensus. incomplete
CC   sequences.
XX
SQ   Sequence 1895 BP; 790 A; 123 C; 526 G; 455 T; 1 other;
     atactcagaa atagattgga agaagaggtg gaagaaaaag aattaatgcc ggagagtcaa        60
     gctggatttc gaaagggaaa atcagcaata gacaatattt ttgtactgta tcacataata       120
     caaaagaaaa aaggacaagg aggaagagag gaaaagatat atgcattgtt tgcggacttg       180
     aaggcggctt tcgataacgt gacagaaata cattatggaa tataatgagg agagatgaga       240
     ataaaggaac agatgataaa gagatagatg aaggtgtatg aggaaacaga agtgaggata       300
     aggacggaac aaggactctc ggaaggattc twcactagga aaggagtaca acagggatgt       360
     ataatccgct cttgtttaat ttatatatgg cggatataga taagatattt agaaaaagag       420
     gaataggagg agagatatag gaaaaagcag atttgaaatt tagcgtatgc ggatgatatt       480
     gtttaatgtg cgagcaacag ggatgcaatg tgaatatgat ggataccaaa ggtttttgaa       540
     gaaacgaaga ttagaattaa gcgtagaaaa gacaaaaatg atgtatttaa taaaaaggga       600
     aggaaaagaa ggaagtatgg aaatggaata ataaagactt attgaagaag tacagatttt       660
     caaatattta gattttacaa taaaaggaaa ggtaattata aggatcaatg ttgggaagaa       720
     agtggaagat ggctgcaaga aaagtatagg gatataggag agagattatg taggaatgat       780
     tttgggagaa gatggacatt atataaatat ctggtgcaaa gtgtgatggc ttacggaata       840
     gaaatatggg gctaggaaga gaaagagaaa ttagaaaagg ttatgatgga ttatgtcaga       900
     tggattttcg atttagattt ttgcacaccg aggtatgtga tatataggga gttagctatg       960
     gacaaaatga agatgagatg ggatttgagg gcgagaaaat atgaggaagg aattaaaaaa      1020
     agaaaagaag aaaagttatg taaaatatgt tgggaggaaa aggtagcata ttgagtgaga      1080
     gatcaatgtg aaaaggaaag ggaaaagtat tacaatagga atggatggga catagaagcc      1140
     attgaagagt ttaataatgg ggaaagaaac tgtgaagagg aattaatcag aagggaaaga      1200
     gatacacaga gataatggga agatagtaag attcaaatgc tagatataat aaaaggtata      1260
     aaatcatagg aataagtagt agaggatcca gttatttaag gaaagaaaat ttagagaaga      1320
     caagcatggg ggatgggtta gagcacttgt aaaattgaga tgtggaaatt tagaggaaat      1380
     aaataaatat tggttaggag aagaaagaag aatatgtgtt ttgttgagaa ggaaaggata      1440
     atatggaaca ttatgtaaga gaatgccaga gaactaaagg ttggtggacg gagataggta      1500
     ggaacaaaga agcgatcttg aagagaatat ggggggaaga gctagattgg gcaaaaggga      1560
     atgttttaag gaaaatatgg aaggaaagag aaagagaatg tagagagaaa agcgaagtct      1620
     gtgataaata agctgtgata ggtgtaaata agtattaaat gtaaggtgta aaacggagaa      1680
     gcaggtagaa ttgtattgta ttgtagtatt gtatttatga aaacgagcga gaaatgatgt      1740
     aaaggagctt atagtgagat tagagtaagt tagagaataa ggtggaagaa tgagagatgg      1800
     gatgaatgag gataaggatt ttatattgta aaccaagtcc ccttcttggc tatatggctg      1860
     aagagtaaat aaattctatt ctattataat atttt                                 1895
//
ID   RTE-1_PPo   repbase;    DNA;    INV; 949 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-949
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3151-3151 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..912
FT                 /product="RTE-1_PPo_1p"
FT                 /translation="TYVRSAAGDSDRFGVSVGLHQGSALSPYLFLLVMDAL
FT                 TLNIQEEAPWCMLYADDIVLVGEDECEVQSRLEEWRVKLEGAGLKISRTKT
FT                 EHLFCDFGGPTSFSPIALNGVPLPTCSDFKYLGSLVQSDGGVDRDVKSRIN
FT                 AGWMKWRQVTGVTCDPRMPLRLKGQIYKSIIRPVVLYGSECWATKVADERR
FT                 LHVAEMRMLRWMCGVTRLDKVKNVYIRGSLKVAPVVEKLRSKRLAWYGHIM
FT                 RRNDGDINQKVLRLNVDGYKGRGRPKKVWMDCVKEDMLKKGVDSDMTADRD
FT                 VWKSSTYCADPP"
XX
SQ   Sequence 949 BP; 267 A; 157 C; 289 G; 236 T; 0 other;
     acatacgtcc ggtccgctgc tggcgatagt gacaggttcg gtgtctcggt gggtttacac        60
     caggggtcgg ctttaagccc gtatctgttc ctcctggtaa tggatgcttt gacattaaac       120
     atacaggagg aggcaccctg gtgtatgctt tatgccgatg acatcgtgct tgtcggggag       180
     gatgaatgcg aggtacagag caggttggaa gaatggcggg ttaaattgga gggagctggt       240
     cttaaaatca gcaggaccaa aactgaacat ttgttttgcg attttggcgg tccgaccagc       300
     ttctctccaa tcgccttaaa tggtgtgcct ctaccaacct gctccgactt taagtacctc       360
     ggttctctag tccagtccga cggtggcgtt gaccgagacg taaaaagccg aataaatgca       420
     ggttggatga aatggcgaca ggttactggt gtgacttgtg atccaagaat gcctcttagg       480
     cttaagggac agatctacaa gtccatcata agacctgtcg tattgtatgg atctgaatgc       540
     tgggccacca aagttgcgga tgaaaggaga ttgcatgtgg ctgagatgcg tatgttaaga       600
     tggatgtgtg gtgtgacaag attggataaa gttaagaatg tgtacattag aggaagtttg       660
     aaagtagcgc cagtggtgga gaaattgaga agcaaaaggt tagcgtggta tggacatatt       720
     atgcgacgaa atgatgggga cataaaccag aaagtgttga gattgaatgt ggatggctac       780
     aaaggaagag gaagaccgaa gaaagtatgg atggattgtg tgaaggaaga tatgcttaag       840
     aaaggagtgg attcagatat gacggctgat agagatgtat ggaagagcag cacatactgt       900
     gccgaccctc cataagggat aagggcaagt ggatgatgat gattgtaga                   949
//
ID   RTE-1_PXu   repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-389
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3081-3081 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 389 BP; 147 A; 49 C; 92 G; 101 T; 0 other;
     aacaatatca ctaatactgt aaggagacta aaatggcgtt ggtcgggaca tatgatgaga        60
     gagaagaatg aaaaatggtc tagattagtc acagagtggt acccacgaga ggggaagaga       120
     aacaaaggaa gacaggtaaa gaggtgggaa gacgacctca aaaaagttgc aggtcgttta       180
     tggattagag aagccaggga tagacagaaa tggaaatctt tagaggaggc ctttgtccta       240
     ggacaagctg tagattaagg atagcagtcg ccggttcaaa actatttttt ttttgatact       300
     caatattact tactgttaat gtaactaaaa aaaatgtatg aaaatttgta aaactaatta       360
     tcttcagcaa taaaggcttt attattatt                                         389
//
ID   RTE-1_SIn   repbase;    DNA;    INV; 4968 BP.
XX
AC   .
XX
DT   23-DEC-2011 (Rel. 19.02, Created)
DT   23-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   RTE non-LTR retrotransposon sequence - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-4968
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 476-476 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           217..771
FT                 /product="RTE-1_SIn_1p"
FT                 /translation="MVGKEMAGLGKDEKTGKVGKQLKLTTVGKGEGKEGGK
FT                 RVTFKLSEEREKGEREDLIKVMMEELKILKGDRKVYKEEMKKFKEIVKECE
FT                 EKIGRLEERIEEMEKNWKEEKEKDLTSVEEGGEREDRRSVGSVWSLRSSSA
FT                 SRASLDSRRSGLSEREIGSLRKWAAERDWEDRKLNIIIKGVNMPER"
FT   CDS           1326..3491
FT                 /product="RTE-1_SIn_2p"
FT                 /translation="MCETWVEESGWERLKDRMPESHEWICSFARKEKNKGR
FT                 ARGGFIIGKRKEDVGERNRITIIKEKEGMVMTEIAWEKEKQRIISVYGAQG
FT                 GKDLKEKLEELIGEEEEGNIIIGGDFNVRIGELGGKDIGEGERHSKDKVIG
FT                 NGGRKIVEWITEKGWFILNGTMEGDWEGEFTYVGVRGCTVIDYVIVSVDVR
FT                 DRIYKFRVGDRADSDHVPLEMEFSGGEEEMDPEEEREQEEEEEVEIETILW
FT                 DDEAKVMYAERTEELCNTEELEEKESDTLEEEWEKIKKIVKEAMVKKRIKR
FT                 RKKELGHKDWWDRSCTRKKREVKRIYKKWRKGRIGRDRYMKEKRNLKELLE
FT                 KKQKEKRRKEEEELRRMKNEADVWKYINRKRGRRTTTDNKIGKEEWRKHFM
FT                 DLLDGSEMGPMERRVRREEKQQQEEEEEEIVEAEIIKAVGKMKVKKAAGID
FT                 GIPAEAWKYAGKELWKRLVKIMKRIWYTGEMPNDWRMSIIMPLYKRGEKEK
FT                 ASNYRGISILCSAYKIYAEIIRNRLETEVEDRGLIPASQAGFRRGRSTMDN
FT                 IFVLSHLMQREKGRGGRNEKVYMLFADLKAAFDRVNREELWKVLRSMGIKE
FT                 QLIGRIEKVYEVTQAVVRTRQGNTESFATGKGVRQGCVMSPLLFNLYTAEL
FT                 EQVLRNRGIGGVAIGKTRIWELAYADDIVLIAKNREALLDMMXTLKRFLAD
FT                 RKLKLCPEKTKIMVFNRKKKKK"
FT   CDS           3476..4558
FT                 /product="RTE-1_SIn_3p"
FT                 /translation="EKKEKIEKWKWGKEGIEEVQAFKYLGFVLNNRGSYKE
FT                 HVKELCGKGRIAVRKVWGLGERICRNDIKRRWMLFTYLVQSVMAYGVEIWG
FT                 WTEIEKLEKIMMDYVRWTFRLDFCTPRYIISRELLMDKLRVGWGIRARRYE
FT                 NRIKVGRAGEIVKECWKEKEQNNWSDIYGIERERYYNRNGWGTEAKEVKEE
FT                 VGDDLEKDLIDRERDIQRQWENEKINAARYNRRYKKIGLDAKLPNYLESRN
FT                 VEDLSRGEEIRAKIKVRCGNLEQANKYWLEERQRLCIFCEEDWDCLEHYVK
FT                 DCVKTSVWFADLGDDKDRVVEQICEEDMDRRXGEISKKLWKERERELKRRK
FT                 EASDEREKNEKNSTEIVE"
XX
SQ   Sequence 4968 BP; 1970 A; 463 C; 1635 G; 890 T; 10 other;
     gggacttggt taggcggagt gaaggtgtgc ggatgcgtgg tgtgagccgg tgtgagataa        60
     gaagcgaaat agcgtatatt aggatagaga caggtgtaag gaggcgagaa ttagcgaggt       120
     agagaggtaa gaagataggg gaattggagg agaaggtagg tggagagaat tggcggagaa       180
     aaaggcggat taaggcgagg atagaaagag gaggttatgg taggcaagga aatggcggga       240
     ttaggtaagg acgagaagac cggtaaggta gggaagcagc ttaaactgac tacggtcggt       300
     aaaggtgaag gtaaagaagg aggaaagaga gtgactttca agctctcgga agagagggaa       360
     aaaggggagc gagaagattt aattaaggta atgatggagg aattgaaaat actgaaaggc       420
     gataggaaag tgtataaaga ggagatgaaa aaatttaagg aaatagttaa agaatgcgag       480
     gaaaagatag gaaggctaga ggaaagaata gaagaaatgg aaaagaactg gaaggaagaa       540
     aaggagaaag atttgacaag cgtggaggag ggaggagagc gggaagacag gagaagcgtt       600
     ggaagcgtgt ggagcctgag gagcagttcg gccagtaggg cgagtttaga ttctaggcgt       660
     agcggactaa gcgagagaga gataggtagt cttaggaaat gggcagcgga aagagactgg       720
     gaggatagga aacttaatat tattataaaa ggtgtaaaca tgcccgagcg gtgaagaaag       780
     acaggttaga aagaaggaag tgggcagaag aattgataaa agaaaaaata gaagtaactt       840
     gcaaggtaac gagccgtaga gtaagtggac ccgcgataat cgcaaaactg gagaacgagg       900
     aaaagaaaaa ggaagtaatg attaataagt cgaagttaaa gctaaaagga gaaaggatat       960
     ttttggagaa cgacgtggag ctgggaacag agaagaacgc aggagaggat aaaaagttgg      1020
     tggaaagagc agaaagagaa aggagttcaa gtaaaaatag gattcggcag agtgaaaata      1080
     ggagatatat ggagaccatg ggaagagata gagagggagg aggaaaggag agagaataga      1140
     gaagcaggng acagaggagn ggagaatcgg aatttcggct aagccgagaa gaggaaggga      1200
     gacgngagga gggagtagta ataaatagga ggaacgggag gaaatgccta ttttggaacg      1260
     tggcgggaat aggaaacaaa gataaagaat tttggaaata cgtgagagag tttgaaatag      1320
     tcagtatgtg tgagacctgg gtggaagaga gtggatggga gcgcttgaaa gataggatgc      1380
     ctgaatcgca tgaatggatt tgtagttttg caaggaagga aaaaaacaaa ggaagggcga      1440
     gaggaggatt tataataggc aagaggaaag aggatgtagg agaaaggaat aggataacga      1500
     taataaaaga gaaggaggga atggtgatga cagagatagc ttgggagaag gagaaacaga      1560
     gaattatttc ggtttacggg gcacaaggag gaaaggattt gaaggagaag ttagaggaac      1620
     ttataggaga agaggaggaa ggaaatataa taataggagg agattttaat gtgaggatag      1680
     gagaactagg aggtaaggac ataggagaag gagagagaca cagtaaagat aaagtaatag      1740
     gtaatggagg aagaaaaata gtagagtgga taacggaaaa aggctggttc atcttgaatg      1800
     ggacaatgga aggtgactgg gagggtgagt ttacatacgt aggagtaaga ggatgtacgg      1860
     ttatagatta tgtaattgta agcgtagatg taagagatag aatttataag tttagagtag      1920
     gggacagagc ggactcggac cacgtgccgt tggagatgga gttcagcggg ggagaagaag      1980
     aaatggatcc agaagaagaa cgagaacaag aggaagaaga ggaagtagaa atagaaacga      2040
     ttctatggga tgacgaggcg aaggtgatgt acgcagaaag gacggaggaa ttgtgtaaca      2100
     cggaagagct ggaagaaaag gaatcggaca cattagaaga agaatgggaa aagataaaga      2160
     agattgtaaa ggaagcaatg gtgaagaaaa gaataaagag aaggaagaaa gagctgggtc      2220
     ataaagattg gtgggacaga agctgcacca gaaagaagag agaggtaaaa agaatctaca      2280
     agaaatggag gaaaggaaga ataggaagag acagatatat gaaggagaaa agaaatctga      2340
     aagaactgct agagaagaaa caaaaggaga agaggagaaa ggaagaggag gaactgagaa      2400
     ggatgaaaaa tgaagcagac gtgtggaaat atataaatag gaagagaggg aggagaacaa      2460
     cgacggacaa caagatagga aaggaagaat ggagaaaaca cttcatggac ctgcttgacg      2520
     gttcggagat gggcccgatg gagaggagag taaggaggga ggagaaacag cagcaggaag      2580
     aagaagagga agaaatagtg gaggcagaaa taattaaagc agtnggcaaa atgaaggtca      2640
     agaaagcggc aggtattgat gggattccgg cagaggcatg gaagtacgcg ggcaaagaac      2700
     tntggaaaag gctggtgaag ataatgaaac ggatttggta tacaggagag atgccaaacg      2760
     attggagaat gagcataatt atgccgttat ataaaagagg agagaaggag aaggccagca      2820
     actacagagg tatctctatt ctttgctcgg cgtataagat ctatgcggaa attatcagga      2880
     acagactgga gacggaggtg gaagatcgag gcctgattcc ggcgagtcag gcgggtttta      2940
     gaagagggag gtcgaccatg gacaacatct tcgttctcag tcacttgatg cagagggaga      3000
     aaggaagagg aggaaggaac gaaaaggtat acatgctctt cgcggatctg aaggcggcct      3060
     tcgacagagt aaatagagag gaactatgga aagtgctgag gagtatgggt ataaaggagc      3120
     agctgatagg aaggatcgaa aaagtatacg aagtgacgca ggcggtggta agaacgagac      3180
     aaggtaacac ggaaagtttc gcaacaggaa aaggcgttag acaaggatgt gtgatgagtc      3240
     cactcttgtt caatttgtat acagcggaat tagagcaggt attaaggaac agggggatag      3300
     ggggcgtagc aataggtaag acnaggatat gggaattggc gtacgcggac gacatagtgc      3360
     tgatagcaaa aaatagagaa gcnctactag atatgatgng cacgctcaaa cgtttcttgg      3420
     cagataggaa attgaaatta tgtccagaga aaacgaagat aatggtcttt aataggaaaa      3480
     aaaagaaaaa atagaaaaat ggaagtgggg gaaagaagga atcgaggaag tacaagcgtt      3540
     taaatactta ggctttgtat taaataacag gggtagttat aaggaacatg taaaagagtt      3600
     atgtggtaaa ggtagaatag cagtaaggaa agtatgggga ttaggagaga gaatttgtag      3660
     aaacgacata aagaggagat ggatgttgtt cacatacctg gtgcaaagtg tgatggcgta      3720
     tggggtggaa atctggggat ggacagagat cgagaaatta gagaaaataa tgatggacta      3780
     cgtcaggtgg acgtttaggc tggatttttg tacaccaaga tacatcatct caagagagct      3840
     gctaatggac aaattaagag tcggatgggg gatcagagcg aggagatatg agaatagaat      3900
     taaagtaggg agagctggag aaatagttaa ggagtgttgg aaggaaaaag agcagaacaa      3960
     ctggagcgat atatatggga tagaaaggga aagatactac aacaggaatg gctggggaac      4020
     agaagcgaaa gaggtaaaag aagaagtggg agacgatttg gaaaaggact taattgacag      4080
     ggaaagagat attcagaggc aatgggagaa cgaaaaaatt aatgcggcaa gatacaatag      4140
     gagatataag aaaatagggc tagatgcgaa gttgccgaat tacttagaaa gtaggaatgt      4200
     agaggatcta agcagaggag aggaaataag agccaagata aaagtaagat gtggtaatct      4260
     agaacaagcg aataaatatt ggctagaaga aaggcagcga ctatgtatat tctgcgagga      4320
     agactgggac tgtctggagc attacgtcaa ggattgcgtg aaaacaagcg tatggtttgc      4380
     ggatttagga gatgataagg acagagtggt agaacagata tgcgaggaag acatggacag      4440
     gcgganagga gaaatatcga agaagctatg gaaagagagg gaaagagaat tgaaaagaag      4500
     aaaggaggca agcgatgaga gggagaaaaa cgaaaagaat agtaccgaaa tagtagaata      4560
     agacaaaagg atttagacag aagaaatagg taataactgt aatataaggt aattgtgtaa      4620
     taactgtaat ataaggtaat tgtataattg tataaagtaa ggaaaatgta aagaggctgt      4680
     gatctctaag tcatagaatt agtaattgaa taggcgagaa taggtacaag taatacaaaa      4740
     aggcaataga taaacggagt agggagggcg tagaatataa gatacagagg aaatatttga      4800
     gaggctgtgg caaagatagg tagaagagta ggagtagaat tagcttaagn caagaactgt      4860
     acaagcggcg agggaatgga aggatgagtg agaatagatt ctatgtaaac caagtccact      4920
     tctcggctga aatgtaagct tgaagttaat aaattattat tattattt                   4968
//
ID   RTE-20_Hmel repbase;    DNA;    INV; 3169 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-20_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3169
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           70..3141
FT                 /product="RTE-20_Hmel_1p"
FT                 /translation="GTNKRDGQQHLLSHTKKKKTALANTLAQRGEYGHFHP
FT                 MSVSSKNRPPVLGRPARPNYGSGCGIGGSGGAKNPRVTAGYQKRLYLATYN
FT                 GRSMRLDEHLVELEVELSHIKWHILGLSEVRRKGEGAITLESGHMLYFREG
FT                 EQVSQGGVGFLVHKSLISNVVEISSVSNRVAYLVLKLSNRYALKIVQVYAP
FT                 TSTHSDDEVEEMYEDIAKALNNTSKAHYSVVMGDFNAKMGVQRSGESHIGP
FT                 FGLGDRNQRGQLLANFLESQRLFLMNSFFKKKPQRRWTWRSPDSVTKNEID
FT                 FIIANKRHILSDVSVINRFNTGSDHRLVRGTLNIDLKAERTLMIKSTLRPS
FT                 AFQVTHSSETFQTELQNRFNALETTSNINQRTDDLVKTLHNVSAKYFPPKR
FT                 RVNATKLSAETLELMRKRRELPPPSSAEMSALNLSIRKLTRRDLRRSNTRA
FT                 IKSAIMRNRGSKVFARNLGRPHLTKLKKEDGRIVTSIFEILDEVERYYEQL
FT                 YSSKSGKPGKSRASDQRAPLTRHYTEELPDVDLGEIRMALEQLKNNKAPGD
FT                 DGITTELLKAGGTPVLKVLTSLFNSVIHHGKTPETWSKSDVVLFFKKGDRT
FT                 LLKNYRPISLLSHVYKLFSRVLTNRLASRFDEFQPXEQAGFRSGYSTVDHI
FT                 HTVRQIVQKTQEYNRPLCMAFVDYEKAFDSIETWAVLDALQRCRIDWRYIE
FT                 VLRSLYTSATLTVQIQKSKTKAIQLRRGVRQGDVISPKMFNNALEDVFKTL
FT                 DWTGFGVNVNGEYITHLRFADDIVIVAESLEQLAEMLQSLDGSSRRVGLGM
FT                 NLSKTKVMFNEHVIPGPIYVDGTPLEVVREYIYLGQTIQLGKNNFEKEADR
FT                 RIQLGWAAFGKLRQIFSSPIPQCLKTKVFNQCVLPVMTYGAETWTLTVGLV
FT                 HKFQVAQRAMERAMLGVSLKDKIRNEVIRKRTGVTDIARRISTLKWQWAGH
FT                 ICRRTDGRWSRRVLEWRPRIGKRSVGRPPARWTDDLKKVAGFDWMRKAEDR
FT                 ELWRTLGEAYVQQWTRKG"
XX
SQ   Sequence 3169 BP; 921 A; 747 C; 802 G; 698 T; 1 other;
     acccgtgaag tgccgggtca gaatagcact tccccatttc ttcccgtggg tgtcgtaaaa        60
     ggcgactaag ggacaaataa gagggatggg cagcagcatc tcctctctca cacaaaaaaa       120
     aaaaaaactg cgctcgccaa cacgcttgcc cagcgcggtg agtatgggca ttttcatccc       180
     atgagtgtct caagtaaaaa caggccccca gttctcggca gacccgctag gcccaactac       240
     ggtagcggtt gtggtatcgg agggtcaggg ggtgctaaga atccccgggt tacggcaggc       300
     taccaaaaac gactctatct ggcaacgtac aatggacgct cgatgagact ggacgaacac       360
     cttgttgaac tagaagtaga gttaagtcac attaagtggc atattctagg cttatctgaa       420
     gtccgaagaa agggggaggg cgcgataacc ctggagtcag gccacatgct ttacttccgc       480
     gaaggtgagc aagtctccca gggaggagtc ggttttttgg ttcacaaatc tctcataagc       540
     aatgttgtag aaatcagtag tgtgtcgaac agggttgcat accttgtcct taaattatct       600
     aacaggtacg ccctgaaaat tgtacaggta tacgcgccga cttcgacaca ctctgacgat       660
     gaggttgaag aaatgtacga agacatcgct aaagccctca acaacacctc gaaggctcat       720
     tacagcgttg ttatgggaga tttcaatgct aaaatgggag tacaaagaag tggcgaatca       780
     cacattggac ccttcggttt gggcgatagg aaccaaaggg gtcaattgct ggcaaacttc       840
     ctcgagtccc agaggctctt tttaatgaac tcgttcttta aaaagaagcc tcaaaggagg       900
     tggacctggc gaagccccga tagtgtaaca aaaaacgaga tagactttat tatcgcgaat       960
     aaacggcaca tacttagtga tgtctcagtg atcaataggt ttaataccgg aagcgatcac      1020
     cgactcgtac gaggcacact aaatattgat ttaaaagctg aaagaacgct aatgataaag      1080
     tctactctcc gaccatcagc gtttcaagtt acacatagtt ccgaaacgtt ccagaccgaa      1140
     ctccaaaacc gattcaacgc actggaaacc actagcaaca ttaaccaaag aaccgatgat      1200
     ctggtcaaaa cgctgcacaa tgtctcagcc aaatattttc ccccaaagcg acgagtcaac      1260
     gcaacgaaac tctcagctga gacactcgag cttatgagaa agcgaagaga actgccacca      1320
     ccgtcttcgg cagaaatgag tgccttaaac ctatccatca gaaagctgac gcgtcgcgat      1380
     ctccgtcgct caaatacacg cgctatcaaa agtgcgatca tgcggaatcg gggatcgaaa      1440
     gttttcgctc gcaatttagg aaggcctcat ctcacgaaac tcaaaaaaga agatggtaga      1500
     attgttacat ctatatttga gatactcgat gaagttgagc gttattacga gcagctatac      1560
     tcgtcgaaat cagggaaacc cggcaaatcc agagctagtg accagcgcgc tcctttaacg      1620
     cgccattaca ccgaagagct cccggatgtt gacctcggtg agattaggat ggctttggaa      1680
     cagcttaaaa acaacaaagc tccgggcgat gacggaatta ctacagaact ccttaaagca      1740
     ggtggcaccc cagtcctgaa agtgctaaca agcctcttca attccgttat ccatcacggt      1800
     aaaaccccgg aaacgtggag caagagtgac gtggtactgt tcttcaagaa gggagaccga      1860
     actctcttga agaactatag accgatctca ctcttgagcc acgtatacaa gctgttctcc      1920
     agagttctga cgaatcgtct tgccagcaga tttgacgagt tccagccgbc agagcaagcc      1980
     gggtttcgat caggctacag caccgtagac cacatccata ctgttcggca gatagtacaa      2040
     aaaactcagg agtacaatcg accgctgtgt atggctttcg tggactacga aaaagccttt      2100
     gattctatcg aaacctgggc ggttctggac gcactgcagc gatgccgtat cgattggagg      2160
     tacatcgagg tgctgcgaag tttgtatacg tctgctacat tgactgtcca aatccagaag      2220
     agtaaaacca aggcgatcca actgcgcaga ggtgtaaggc agggtgatgt tatatccccg      2280
     aaaatgttta acaacgcatt ggaagacgtc ttcaaaaccc tggattggac cggctttgga      2340
     gtcaatgtaa acggcgagta catcacgcac ctcagattcg ccgacgatat cgtaatcgta      2400
     gcagagtcgc tggaacagct agccgagatg ctgcagagcc tagatggatc ttcgcggcgt      2460
     gttggtctcg gtatgaactt gagcaagaca aaggtcatgt tcaacgagca tgtcataccg      2520
     ggaccgatat acgtggacgg cactcctctt gaagttgttc gggagtatat atacctaggg      2580
     caaactatcc agcttggtaa aaacaacttc gagaaagagg ctgatcgaag aattcaactg      2640
     ggttgggcag cgtttggcaa gctacgtcaa atcttttcgt cgccaattcc gcaatgtctg      2700
     aagacaaaag tcttcaacca gtgcgttttg ccagtcatga catacggtgc cgaaacgtgg      2760
     acactaacag tcggtctagt ccataagttc caagtcgccc aacgtgctat ggagcgagct      2820
     atgctcggag tctctttgaa agataaaatc agaaatgagg ttatccggaa aagaaccgga      2880
     gttaccgaca tcgctcgcag aattagtacg ttgaaatggc aatgggctgg acacatctgt      2940
     cgaaggaccg atggccgttg gagcagacga gtccttgagt ggagaccgcg gatcggcaag      3000
     cgtagcgtag ggcgccctcc agctcgatgg accgacgacc tgaagaaggt tgctggcttc      3060
     gactggatgc ggaaggcgga ggatcgggag ctttggcgca ccctgggaga ggcctatgtc      3120
     cagcagtgga cccgaaaagg ctgatttgat tgattgattg agatgatga                  3169
//
ID   RTE-20_HMM  repbase;    DNA;    INV; 907 BP.
XX
AC   .
XX
DT   07-MAR-2013 (Rel. 19.10, Created)
DT   07-MAR-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-20_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-907
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2821-2821 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 5' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..843
FT                 /product="RTE-20_HMM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="VFRNLRWDDIGLNINGVKLNHLRFADDIILFSETPDS
FT                 LEHMLQQLSDESAKVGLAINTSKTNVMTNSAKIDIKINYGQMEIKYVNEYI
FT                 YLGQLLSTEDTMQKEVDRRITSSWKRFWSLSEVLKDKDMPIKDKRRVFNTC
FT                 VLPCLSYGCQTWALNDKQIKKIKICQNGMERSIMGVKRKDKVKLQIIKSKT
FT                 KFENIHTTYKRLKWRWTGHMLRERIEKWTHLITEWYPRDSRRSKGRPATRW
FT                 EDDFKKIAGPAWTRVAKNKIKWKALEEAFVEGQAEKEKPL"
XX
SQ   Sequence 907 BP; 371 A; 127 C; 194 G; 215 T; 0 other;
     gtgtttagaa atttgcgatg ggatgacatt gggctcaaca ttaacggagt aaaacttaac        60
     catctacgct ttgcagacga tattatactg ttttccgaga ctccagatag cttagagcac       120
     atgctacaac aactgtcaga tgaaagtgcc aaagtaggct tagcaattaa cacatcaaaa       180
     acgaacgtta tgacaaactc cgctaaaata gacattaaaa taaattatgg acaaatggaa       240
     ataaaatatg ttaatgaata catatatcta ggtcaactat tgtctacaga agatacaatg       300
     caaaaggaag tagatagaag aataacaagc agttggaaac gattttggtc tttgagtgag       360
     gtgttgaagg acaaggatat gcctattaaa gacaaaagaa gagtgtttaa cacatgtgtt       420
     ctgccatgct tatcatatgg atgtcaaacc tgggcattga acgataaaca aattaaaaaa       480
     atcaaaatat gtcaaaatgg aatggagaga agcattatgg gagtgaaaag gaaggacaag       540
     gtgaaattac agattataaa gagcaaaaca aaatttgaaa acatacacac aacatacaaa       600
     cgccttaaat ggaggtggac aggacacatg ctaagagaaa ggatagagaa gtggacacat       660
     cttattacag aatggtaccc gcgtgatagc agaagaagta aaggtagacc agctacacgt       720
     tgggaagacg atttcaaaaa gatagctgga ccagcatgga cacgagttgc gaagaataaa       780
     ataaaatgga aagctttaga ggaggctttt gtcgaaggac aagctgaaaa agagaaacca       840
     ctttagtttt agaataatgt aaatgtaaat gtaatttttc agcaataaag gcttattaat       900
     taaatta                                                                 907
//
ID   RTE-20_LMi  repbase;    DNA;    INV; 3302 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3302
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 269-269 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(139..261,265..852)
FT                 /product="RTE-20_LMi_1p"
FT                 /translation="MKRNINGNNPQVVTNPPLQMGQAGILGTCTFMYSLLL
FT                 ASRKEQKRKNILLPKVNFLLKVGKLKQTLDVLEKYNIKIAALQETRFPDED
FT                 AMETQGYRIYKGKPGERVMKTVPHLGTGFAVHHRMVDHVLEFTSPNGRTSS
FT                 LSLRSRNRAYTIVNFHAPTNDTNRKDLEAVEYYWNTLERPRQDPKPPHHIL
FT                 MVTSITVGKEKKYHRIGRLPSPQEDQQNGERLIKHNQPRSSDYQGRP"
FT   CDS           join(1017..2363,2348..3202)
FT                 /product="RTE-20_LMi_2p"
FT                 /translation="EEHTYPEVSRIPRFNTQRLSDKDCDFQTILKKNTQKQ
FT                 GWPNLQKALLDAAHXXIPASSNKGKHPWWTTECDEAIEERRRVWIKWNQRK
FT                 DEANHQAFMAQRKTTACIIRKTKRNYNRSQILQAEEDFKKNNSRDLYKGLK
FT                 KQTTSYTAPTLHLRGPDGKLQINNSDCTNTFAEYFRKLLNAEQPKERLAFT
FT                 EPAIRNQDSVPPNREEIEKIIKDLKNNKAPGEDGIVAEMWKHVDDQSIQSI
FT                 TQIIEDIWRTEVLPEGWTSAVIHPLHKKGSKTDLNNYRGISLLLITYKIFS
FT                 KALQTRVTKQLDSQLGEYQAGFRVSRSCTEQIQNLKTILSYRSRGGHPWVA
FT                 IMVDFEKAYDSIDRQTLFSTLWELGLDEKTTRLVQATLNNTTSKVKFRGEL
FT                 SASFPIQTGVRQGDGLSCILFNCVLEKIIREWTSTLSPEAGLKLGYKKDNL
FT                 MYHVPHVPCLAFADDLTLLANSMEEATHQLQSLYNVAVKTGLKINIQKTEF
FT                 ITNIKQASSTIPLGNNNICKVPAVKYLGEWISASESETLAIDARCTKLERA
FT                 YHSCKNIYTSKYLSKNLKLKHYNSVVRPSALYASECLLMNRKGPLRKLELK
FT                 ERKILRRILGPIREEDGTYRIRHNNELYEHQEDIVTCMRKRRLTFYGHMTR
FT                 LNHSRLTKKILTVTSRGKASKAKWFTSVRSDLEELQIPLQTTENRTQYRQA
FT                 ILQESSHCLSQARSVQAPPDLNGRMRGSRLTARR"
XX
SQ   Sequence 3302 BP; 1127 A; 818 C; 719 G; 636 T; 2 other;
     ggcagttcca cgtgtcagtg gcggtacccc aacagcgtct gttccacatt tagtggcggc        60
     tgataaaata tacctcaggc tacaaccttg agcttcgtca ccctagggtg accccatata       120
     tacactgttg gactcaacat gaaaagaaac atcaacggaa ataatcccca ggtggtaacc       180
     aatccacccc ttcaaatggg gcaagcaggg attctgggga cctgcacctt catgtactcc       240
     ctactactgg cctcacgtaa ataagaacag aaaaggaaga acatcctcct acctaaagtg       300
     aacttcctgt taaaggttgg taaactcaaa caaacccttg atgtgttaga gaagtataac       360
     atcaagatag cggcattaca agagactcga tttccagatg aggacgcaat ggaaacccaa       420
     ggataccgaa tctataaagg aaaaccaggt gaaagagtga tgaagacagt tccacacctg       480
     ggtactggct ttgctgtaca tcatagaatg gtcgaccatg ttttagaatt cacatctccc       540
     aatggcagaa cctcctcatt atccttgagg tcccgcaata gagcatacac aatagttaac       600
     ttccatgcac ctacaaatga caccaatagg aaagatctgg aagcagtgga atactactgg       660
     aacaccctag agagacctag acaagatccc aaaccaccac accatatatt gatggtgact       720
     tcaatcacag ttggcaagga aaagaagtac cacaggatag ggcgattacc cagcccacaa       780
     gaggaccaac aaaatggcga gcgcctcata aaacacaatc aaccgcgttc aagcgactac       840
     caaggaaggc catgacctgg aagaatccaa atcacatgct gggtgaattt aattagacca       900
     tgtggctatt gacaggagat accacaagga aatacaaaac gtcaaggtaa tgaggggagc       960
     aaacctcgac tctgaccact atctctccct agttaagacc aacctacaac ccttgagaag      1020
     agcacacata cccagaggtc tcgagaatac caaggtttaa cacccaacgg ctgagtgaca      1080
     aggattgcga cttccaaacc atcctcaaga agaacacaca gaaacaagga tggcctaatc      1140
     ttcaaaaggc tctactggat gccgctcatg mawccatacc tgcttcatcg aacaaaggca      1200
     agcacccctg gtggaccaca gaatgtgatg aagctataga ggaaaggcgc agagtctgga      1260
     tcaagtggaa tcagcgcaaa gatgaggcca accatcaggc atttatggca caaagaaaaa      1320
     caacagcgtg tatcatccgt aaaaccaaga ggaactacaa caggtctcaa atactacagg      1380
     cagaagaaga cttcaagaaa aacaattcaa gagatctcta taaaggactc aagaaacaga      1440
     ctacttcata cacagcccca accctacatc tcagagggcc agatgggaag ctccaaataa      1500
     ataacagtga ctgcacaaac acctttgcag aatactttcg gaaactcctc aatgcagaac      1560
     aacctaaaga gagacttgct ttcaccgagc ccgctatcag gaaccaggac tctgtaccac      1620
     ccaacaggga agaaatagag aagataatca aagaccttaa gaacaacaag gccccaggtg      1680
     aagatggtat agttgcagaa atgtggaagc atgtagatga ccagtccata cagagtatca      1740
     cccagatcat tgaggacatt tggagaacgg aggtattgcc agagggatgg acctcagctg      1800
     tgatccatcc attacacaag aaaggaagta agaccgacct caacaactac agaggcatct      1860
     ccttgttgct tataacctac aagatcttct ctaaagcctt gcaaactaga gtcaccaaac      1920
     agctagactc ccaactaggc gaataccagg ctggtttccg ggtgagtagg tcctgcacag      1980
     agcagattca aaacctcaag acaatcctct catataggag ccgaggggga catccctggg      2040
     tagccattat ggtagacttc gaaaaggcat acgactcaat agatcgacaa accctcttct      2100
     ccaccttgtg ggaactaggc ctagatgaga agactaccag actggtccag gctaccctga      2160
     ataacaccac ctccaaagtc aagttcaggg gtgaactctc agcgagcttt cccatccaga      2220
     caggagtcag gcagggggat ggcctctcgt gcatcctctt caactgtgtt ctggagaaaa      2280
     tcatcagaga atggacttcc acattgtcac cagaagcagg actgaagctt ggctacaaga      2340
     aagataacct catgtaccat gtctagcctt tgctgatgat ctcaccctat tggccaacag      2400
     catggaggag gctactcatc aactacagag cctctacaat gttgcagtaa aaaccggctt      2460
     gaaaatcaac atacagaaga ctgagttcat caccaatatc aagcaggctt cttctacaat      2520
     cccactagga aacaataata tctgtaaagt tcctgcagtc aagtacttgg gagaatggat      2580
     ttcagcaagt gagagcgaaa ccttggccat agacgccagg tgcaccaagt tagagagggc      2640
     ctatcattcc tgtaagaata tctatacctc caagtaccta tccaagaact taaagctgaa      2700
     gcactacaac tcggtagtaa gaccctctgc actctatgcc tccgagtgcc tcttgatgaa      2760
     tcgaaagggc ccactcagga aactagaact taaagagagg aagatcctga ggagaatatt      2820
     aggacccata agagaggaag acggtactta cagaatcagg cacaataacg agctgtatga      2880
     acaccaggaa gacatagtca catgtatgag gaaaaggcga ctgaccttct acgggcacat      2940
     gacccgcctg aatcactcaa ggctcaccaa gaagatcctc acagtgacaa gcaggggaaa      3000
     ggcgtccaaa gccaagtggt tcacctctgt tagatcagac ttagaggaac tgcagatccc      3060
     attacagaca accgagaacc gaactcaata ccgtcaggcc atcctacagg agtcttccca      3120
     ctgtctctca caagcaagaa gtgtacaggc accaccagac ctaaatggac ggatgagagg      3180
     aagcaggctc acagccagaa gatgaaggcg tactgggcca agaaaaagca gaagacccta      3240
     gctgagagtt aagacgagcc tcgtggtccc tagtaggccg aaacgaactg aaaaaaaaaa      3300
     aa                                                                     3302
//
ID   RTE-20_PPo  repbase;    DNA;    INV; 342 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-20_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-342
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3173-3173 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..263
FT                 /product="RTE-20_PPo_1p"
FT                 /translation="TRXKDATIVAKKLKWKWAGHTIRGEEKWSKLLMNWYT
FT                 KHKKRKRGRPYTRWVDEIKAAAGSAWSRTAKNRKLWSNMEEAFVKMAHRQ"
XX
SQ   Sequence 342 BP; 133 A; 54 C; 77 G; 77 T; 1 other;
     ataccagaas caaagacgca accatcgtgg ctaaaaaatt aaaatggaaa tgggcgggtc        60
     acacaatcag gggcgaggaa aaatggtcga aattattaat gaactggtac acaaagcaca       120
     agaaaagaaa aagaggcagg ccatatactc gatgggtcga tgagatcaaa gcagcagcgg       180
     gcagcgcctg gtccagaacg gcgaaaaata gaaaactgtg gtccaacatg gaggaggcct       240
     ttgtcaaaat ggcacacaga caataattgt ttataattaa taatacatta tattagaact       300
     gttatttatt gtctgaataa aggcttatat tattattatt at                          342
//
ID   RTE-21_LMi  repbase;    DNA;    INV; 3368 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3368
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 270-270 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(143..1438,1502..3034)
FT                 /product="RTE-21_LMi_1p"
FT                 /translation="MYNFNCRMESPLKVSTTPGGNSNEESTIALCNASGPR
FT                 VLGSPNICIKGESEHPWYPSKLKFNRKFFAGTLNVNSLLKIGKQKELEILL
FT                 DKHEIQILAVQETRFLDENITETKNYRIFKGKPAIKIMKGMPILGTAFCVH
FT                 KNLVDKITEFKSSSERLSLLTIKCKNKQYTFVNCHAPINDDNKKNLSKVEA
FT                 FWELLEDEISKIPKSNVVILLGDFNAQIGREKTFRKIVGEYPAHKRTNKNG
FT                 TRLIGLCKTYXLKLMSTFFKKLPRKAKTWISPNPMLGEFQLDHVAISKHNI
FT                 KEIMNVKVTRNREFDSDHYLTKIKMKLLPXKIQKRQQRLIKYNTDRLTITK
FT                 DAIKHFQEEIKISKSGKWEELSKEINRVAKNVFGATKIMKKAWWNETCEEA
FT                 VAERTKKWKKWKCSGKTEHLDEFKIQRKETARIIKSTKNFYQMFKNHLKGY
FT                 QAPSICFRDENGKVGLSNXHNCEILRKYFEQLLNCEEPNCKLEFPDLHENT
FT                 ETDPPPTAEEIKKAINALKNNKASGEDSITAELIKWSQPKIISNLQLMFEE
FT                 IWETEKIPEDWKVALIHPLHKKGDKQDVNNYRGISLLPVGYKIFSTIILNK
FT                 VEATLDSHLGEYQSGFRKGRSCSEQIFNLKSIIRHRLTNSKDIVVTFIDFK
FT                 KAFDSVDRETLDKVIREFGIKSKLANLIRETLTDTKSKVKLQGEISKAFDI
FT                 KTGVRQGDGLSPLLFNCVLEKIVREWKQKLKDHKLSPIRLGTKHKGIEIHC
FT                 LAFADDFAILSENLTNAEIQINLLEEIANKAGLRISVEKTKFMTNIKNAPE
FT                 ILVTDIGXIKRVNKFKYLGEMIQENGLEKFAVEERVHKMERAYGITRNIYN
FT                 KRSLSKNLKIQHYNTVVKPECLYASECLVLNYKLHKLEVLERKIIRKILGP
FT                 LRNTEVWKLRSNAEVYRNIENITETLRKRRLLFFGHLYE"
XX
SQ   Sequence 3368 BP; 1390 A; 535 C; 640 G; 798 T; 5 other;
     cctggtcaac ggtctcaaag gcggaagagg aatcttagtt cccaaggaga agagcggaag        60
     aactaatgga gaaaaccatg aaaaataatc atttcggact aacaatccga tcttatcttg       120
     gaatttactt cctccctgta caatgtacaa tttcaattgc agaatggaaa gtccgctaaa       180
     agtaagcact accccaggtg gtaactcaaa tgaggaatcc accattgctt tatgcaatgc       240
     atcgggacct agggttctgg ggagtcccaa catctgcatt aagggtgagt cggagcatcc       300
     ttggtatcct tccaaactca agttcaatag gaaattcttt gcaggcacct tgaatgtaaa       360
     ctcattacta aaaattggta aacaaaaaga acttgaaatt ctcttagata agcatgaaat       420
     acaaatttta gctgtgcaag aaacaagatt tttagatgaa aatattacag aaaccaaaaa       480
     ctacagaatc tttaagggta aaccagcaat aaaaattatg aaaggcatgc caatacttgg       540
     taccgcattc tgcgttcata aaaatttagt agataaaatt acagaattca aatccagttc       600
     tgaaagactc tctcttctca caataaaatg caaaaataaa cagtatacct ttgttaattg       660
     ccatgctcca attaatgatg acaacaagaa aaatctgagt aaagtagaag cattttggga       720
     acttttggaa gacgaaatct caaaaattcc aaaatcaaat gttgtgatac tactggggga       780
     ttttaatgca caaataggaa gggaaaaaac ttttcgaaaa atagtaggag aatatccagc       840
     tcataaaaga acaaacaaaa atggcacaag actaattggt ctttgtaaaa catatmagtt       900
     gaaattaatg tcaactttct tcaaaaaatt accaagaaag gcaaaaacat ggatatctcc       960
     gaatccaatg ctaggggagt ttcagttaga tcacgtggct atttctaaac acaatattaa      1020
     agaaatcatg aatgtaaaag tgacaagaaa cagggaattt gactctgatc attacctgac      1080
     taaaattaaa atgaaacttc tccctaakaa aatccaaaag agacagcaaa gattgattaa      1140
     atataacaca gacaggctca ccatcacaaa agatgcaatc aaacattttc aagaagaaat      1200
     taaaatatct aaatcaggga aatgggaaga attatccaaa gaaatcaaca gggtagcgaa      1260
     gaatgtattt ggagcaacaa aaattatgaa gaaagcctgg tggaatgaaa cctgtgaaga      1320
     agcagttgca gaaagaacaa aaaagtggaa gaaatggaaa tgttctggga agactgagca      1380
     cttggatgaa ttcaaaattc aaaggaaaga aacagcaaga ataataaaga gtactaaatg      1440
     atcttttgag aagtcacaac ttcttgacat acaaaacaat tttgttaaaa ataactcctg      1500
     aaatttctat cagatgttta aaaatcatct aaagggctac caagctccaa gtatatgctt      1560
     cagagacgaa aatggtaaag taggcctaag caatasccat aattgtgaaa tactaagaaa      1620
     gtactttgag caacttttga actgtgaaga acctaactgt aagctagaat ttccagatct      1680
     tcatgaaaac acagaaacag atccaccacc tacagctgaa gaaattaaaa aagcaataaa      1740
     tgccctgaaa aacaacaaag ccagtggaga ggactctatc acagctgaac ttataaaatg      1800
     gtctcaacca aaaattatat ctaaccttca gctcatgttt gaagaaatat gggaaactga      1860
     aaagattcca gaagattgga aagtggctct tatccatcct ttgcacaaga aaggcgataa      1920
     gcaagacgta aataactaca gaggtatatc tttgttgcca gtgggttata aaatattttc      1980
     aacaattata ctaaacaagg tggaagcaac acttgatagc catttgggag aatatcagag      2040
     tggatttaga aagggcagat cttgctcaga acagattttc aacctaaagt ccataatccg      2100
     tcacagactt acaaactcca aagacatagt tgtaacattt atagatttta aaaaggcatt      2160
     tgattcggtt gatagggaaa cactagataa agtgatccga gaatttggma ttaaatctaa      2220
     attagcaaac cttattcgtg aaacgctcac agacaccaaa tcaaaagtaa agcttcaggg      2280
     tgaaatttcc aaggcattcg acataaaaac aggtgtaagg caaggtgacg gcctgtctcc      2340
     actcctcttc aactgcgtcc tagagaaaat agtaagagaa tggaaacaaa aactaaaaga      2400
     tcataagcta tcaccaatca gactggggac taaacacaaa ggtattgaaa ttcactgtct      2460
     agcatttgcg gatgattttg ccattctttc tgaaaaccta acaaatgcag aaatccaaat      2520
     caatctctta gaagaaatag ccaacaaagc aggtttaaga atttctgtag agaaaacaaa      2580
     atttatgaca aacataaaaa atgctccaga aatcctagta acagacattg ggcmgataaa      2640
     gagggtaaat aaatttaaat atttgggaga aatgattcag gaaaatggct tagaaaaatt      2700
     tgctgtagaa gaaagagtac ataaaatgga gagagcatat ggtataacca ggaacattta      2760
     caacaaaagg tctctgtcta aaaatctgaa aatacagcac tacaacacag tagtaaagcc      2820
     agaatgtctt tatgcaagtg aatgtttagt actgaattac aaattacata aacttgaagt      2880
     cctagaaaga aaaatcattc gaaaaatact tggtccacta agaaatacag aggtatggaa      2940
     actaagaagt aatgcagaag tttatcgcaa catagaaaac ataaccgaaa cactacggaa      3000
     gaggcgactg ctattttttg gacatttata cgaatgaaca gcaacaggtt aaccaaacag      3060
     atttttaaat atctctggga caagaagtca acaatagctg gattcaagaa gttaggaaag      3120
     atttggaaag aaacaatata agtgaaaaag atgcaacaga aagagaaact tttaagaaga      3180
     aagtgttaaa aatggaagga ttccaaggca ggagggagaa gaagacagga gtaaagtggt      3240
     ctgaggagag aaaaaggatg catagtgaaa agatgaaaga atactggagg aaaaagaaag      3300
     aagaacaaag gaggaaacat tgaaattggt gcgtggtcct tagatggccg aaacgaagaa      3360
     agaagaaa                                                               3368
//
ID   RTE-21_PPo  repbase;    DNA;    INV; 2690 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-21_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-2690
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3174-3174 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           145..2526
FT                 /product="RTE-21_PPo_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKHNGYGERNERGQKLINFAIENKLTIINTLFKKKTK
FT                 HKWTWRSPDGRYKNEIDFMLSNRPYMFHNIEVLNINYPSDHRPLRATITLT
FT                 SKKMSRANYHKTKTKLTNVDEIEKYIECLKSEESQSLLNLNENITVQEYYD
FT                 NILRAINKSLQAAEKSTKNQAKAHKILSERTLNLLSKRRELQKSKNKTRTI
FT                 KNQISALYKLVNKYIKKDYTNYRYNIISNHLNKTGSIKKAYKELTPSKTWI
FT                 DGLKKDDKISHNRNEVVNIATEFYKKLYSTKEYNIKNSCEYNRNNIEKKEV
FT                 KEIDENEVFTAINKLKLDKSPGSDNITNEFLKLAAPILSIPFTKLFNTILK
FT                 RGETPSQWSESSITLIYKKGDPNDVGNYRPISLMPAIYKLFSSIINKRISS
FT                 TIEARQPIEQAGFRKGFCTIDHIHTLELLIEKYQEMQRPLYLAFVDYQKAF
FT                 DTISHDSLWCTLRSQEVEEPYIEVIKNIYKNSKNRIKLETVGPWFPVQRGV
FT                 KQGDPLSPKLFIATLESIISTLNWGSFGIPISGKYLNHLRFADDIVLISES
FT                 SSQLQVMIESLNKASKNVGLEMNLSKTMLMTNTDNTRALILVEGKPLKYTE
FT                 IYTYLGKQIGFNRHCNDQEVNRRIQLTWNKYWRLKDVFKSNLPINLKTKTM
FT                 NSCLLPCLTYGCQTWKFNNNIINKIVTCQRTMERSMLKIKKIFKIRHSKIR
FT                 QTTKATDALTHALTSKWKWAGHVARLQDQRWTKRITTWKGPQGKRKIGRPY
FT                 NRWEDDIKKTVGPQWIEIAKSRKNWLALEEAFTRREVPATSKT"
XX
SQ   Sequence 2690 BP; 1131 A; 489 C; 453 G; 617 T; 0 other;
     ccaactgaaa aagcaagtga agaagacatc gataactttt acacaacagt tggtacagca        60
     atagaagctg cccataaatt ctatgtactg ataggtgatt ttaacgcaaa aataggtaaa       120
     ccaagacagg aagaaaagct gattatgaag cataatgggt acggcgaaag aaatgagaga       180
     ggacaaaaat taatcaattt tgctatcgaa aacaagctta caataattaa tactctattc       240
     aaaaagaaaa caaaacacaa atggacctgg agatcacccg atggtagata taaaaatgaa       300
     atcgacttta tgctatcgaa ccgaccatac atgtttcaca atatagaagt attaaatata       360
     aactacccat cagaccacag accattgcga gcaacaataa cattaacaag taaaaagatg       420
     agcagggcca actaccacaa aacaaaaact aaactaacaa atgtcgatga gatagaaaaa       480
     tacatcgaat gcttaaagtc cgaagaatct caaagcttac ttaacctgaa tgaaaatata       540
     actgtacagg aatactacga caatatttta agagctataa ataaaagcct tcaggctgct       600
     gaaaaatcaa caaagaatca agccaaggct cataaaatac tatcagaacg aactttgaac       660
     ctacttagta aacgccggga acttcagaaa agtaaaaaca aaactcgaac aattaaaaac       720
     caaatttctg cactttacaa gttagttaat aaatacataa agaaagacta cacaaactat       780
     agatacaata ttattagcaa tcacctcaac aaaacaggaa gtataaagaa agcgtacaaa       840
     gaacttacac cgagcaaaac gtggatcgac ggattgaaaa aagatgacaa aatatcacac       900
     aatcggaatg aggtagttaa tatagcaaca gaattttaca aaaagctgta tagtaccaag       960
     gaatacaaca ttaaaaactc atgtgaatat aacagaaaca acattgaaaa gaaggaagta      1020
     aaagaaatag acgagaacga ggtgttcaca gcgataaata aactgaagtt ggacaaaagc      1080
     cctggctcag acaatattac aaatgaattt cttaaactag ctgcacctat tttatctata      1140
     cccttcacaa aactctttaa caccattcta aaaagaggag aaacacctag ccagtggtca      1200
     gagtccagca tcacactaat ttataaaaaa ggagatccaa acgatgtggg aaactacaga      1260
     cctataagtc taatgcctgc catctacaag ctcttctcct ctataattaa taaaagaata      1320
     agcagtacta tagaggctag gcagcctata gaacaagctg gttttagaaa aggattctgt      1380
     actatcgacc acattcacac actagagctc cttatagaaa agtaccaaga aatgcaaaga      1440
     ccactctacc tagcatttgt tgattaccaa aaggcttttg acaccatttc ccatgacagc      1500
     ttatggtgca ctctaagatc tcaggaagta gaagaaccat atattgaagt aattaaaaac      1560
     atatataaga acagcaaaaa tagaattaaa cttgagacag ttggcccctg gttccccgta      1620
     caaagaggag taaaacaagg cgacccacta tctccaaaac tgtttatagc gacattggaa      1680
     tcaataatta gcacactaaa ctgggggagc tttggaatac cgatctcagg aaagtaccta      1740
     aaccacctac gtttcgcaga tgacatagta ctaatatcgg aaagcagctc tcaattgcaa      1800
     gtgatgattg agtcattaaa caaagctagc aagaacgtag ggttagaaat gaatctctcc      1860
     aaaacaatgt taatgactaa cacagacaac accagggcat taatattggt cgaaggcaaa      1920
     cctttgaaat atacagaaat ctacacatac cttggaaaac aaatagggtt caaccgacac      1980
     tgcaacgatc aagaagtaaa ccgaagaata cagctgacat ggaataaata ctggagatta      2040
     aaggatgtat ttaaaagcaa tctaccaata aacctaaaaa caaagaccat gaattcctgc      2100
     cttcttccct gtctaacata cggttgccaa acatggaaat ttaataacaa tattataaat      2160
     aagatagtca catgtcaaag aactatggaa cgtagtatgt taaagattaa gaagatattt      2220
     aaaatccgtc actcgaaaat cagacaaact actaaagcta ccgatgcact aacacacgca      2280
     cttacttcta aatggaaatg ggccgggcat gtagctcgtc tccaggacca aagatggact      2340
     aaaagaatta ctacgtggaa aggacctcaa ggaaaacgaa agataggaag accttataat      2400
     agatgggaag atgatataaa gaaaacagta ggaccacagt ggatcgaaat cgcaaaatca      2460
     agaaaaaact ggctggcttt ggaggaggcc tttactcgca gagaggttcc cgcaacgtcc      2520
     aagacataaa aaaaaataat ataataaaaa aaatatacac cctgttttta aaaaaatttg      2580
     aaatgtctaa gtagccattt aaaagaaaca ttgtaatgta tctattgtaa tgtatgtaat      2640
     taagttgctg gaaataaaag gcttttttat tttatttatt tatttattta                 2690
//
ID   RTE-22B_PPo repbase;    DNA;    INV; 274 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-22B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-274
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3175-3175 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..170
FT                 /product="RTE-22B_PPo_1p"
FT                 /translation="IIDWCPRENKRRKGRQRRRWEDEIRKRAGVTWRRKTY
FT                 NRKEWQALGEAYAVSATQS"
XX
SQ   Sequence 274 BP; 106 A; 29 C; 66 G; 73 T; 0 other;
     atataataga ttggtgccca agagagaata aaagacgtaa agggagacag cgtcgtagat        60
     gggaagatga aattaggaaa agagctggag ttacatggag gagaaagaca tacaacagaa       120
     aggagtggca agctttaggg gaggcctatg cggtttccgc aacgcaatct taaaaccggt       180
     gtcaaatgaa ttttaaaatc aaaattgtta agtttatatg taaattgtaa gattgtcgaa       240
     ataaaggcta ttattattat tattattatt atta                                   274
//
ID   RTE-22_LMi  repbase;    DNA;    INV; 3636 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3636
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 271-271 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(465..1499,1430..1702,1644..3260,3190..3615)
FT                 /product="RTE-22_LMi_1p"
FT                 /translation="MKHVIITNIPQGANPSLTSVNASRLSDSGEPASCAIL
FT                 NGEPICTSNLNHGHKIRPKQTFKMGTINIQTMMKVGKLKQVLDSMRELGIG
FT                 ILALQETRFRDESTVESEGYVVLKGKPGVGGSKQPFMFGTAFVVDRRYLDS
FT                 ITAWKGINERLSYLTMKIGNKTYTIVNAHAPTNDKNKKDKAGTEHFWSTLD
FT                 KVMXDVDKRGVTILLGDFNAQIGMERKFRGPVGDYPAHKRTNKNGERLVDL
FT                 CRRHKMRIMTTHYKAKASKKTTWVSPGNRIGEKQLDHVAIRDKNHSEIMNT
FT                 RVRKNSRMESDHYLTEIKCRWIPNRAKKCRTINTHRIDLDLLKKHREEYAK
FT                 EWDHKYSQNRPRSSEKTQRRVCKGMVVQSDWKRVRDMMEEEAVRLAANNQK
FT                 RKHEWWTDECENAVETRRKAWMKWHPAKRSRLVEFSECEKNCNGILQKEAD
FT                 WSNFQNARKIASKTIRNAKRSRWNEKLEEANTAFKKHKSRVFFREMKSRIK
FT                 GFEAREPFVIGQDGTIKIGEKEVCEEMARYFRDLLNAEAPTVKWTHLRSRD
FT                 ESQDSLENAPTRAEVTEAIKNLKNSKASGNDGICAEEIKWGGPEIERSMYN
FT                 IITDIWRNKKIPIDWKEAIIIPLHKKGDKKILDNYRGISLLNIGYKILSKI
FT                 LLNRVEEQLGPTIGEYQCGFRKGRNCAEQIFGIKRIIEHRHRKGKKTIVTF
FT                 VDFKKAYDSVDRSTLLDVLEDRGLDATTHAIIKETLSDTTARIRHRSTLSD
FT                 SFEIKTGVRQGDGLSPILFNLVLDEVVRQWRQLNSNMKIKGVQIGYKVKHN
FT                 AIVDCLAFADDMALLNETEEEAKTALKNLAEVAEKVGLKIAYNKTKTLNTG
FT                 SDWKIDGQVVEKVESFRYLGEKITGGIQSSSSAVDRAQLLQKLRYAVKTTY
FT                 GKKNLSRNAKLRHYTATVRNAALYASETITLGKRACIQLEKEERKILRDIW
FT                 GTKKWGYLDTQNTTGTVRKFETYGAPKNGDIWIHRTRQELYENFEPISSEI
FT                 RKRRLRFVGHIMRMDDERLTKKIWNATCHTGNNWVKEVRDDWKTVGIKERN
FT                 LQALVQDREKYKGLVDGHRWPDTKIKVVLTEEERNKKRENEEVLGRKKTCK
FT                 QATRDPEGS"
XX
SQ   Sequence 3636 BP; 1310 A; 641 C; 972 G; 712 T; 1 other;
     ctgtccgtgc gggcgaggag gtttgcgtgc tctggatccg gagggctatg ccggcggtag        60
     cgtagctgcc agcagggtca cccaagcgga caggctgaag gggaggagcc agaccaagtg       120
     tgtcccacaa tgacctgtcg ataacctctc tcctgaccta tcctgtccta agcctatcct       180
     ctttccttac cattttcact taaatcgtag cgcgaaaagg tcaacggctt catgagcgga       240
     agagatggcc agtcatttca aagcagattt ggcgaattcc aacggtcatc aaggcagatg       300
     aaccttctca gaacagagtg gcgtctgtac tccagtgggg cggccaaaaa ggtctgtact       360
     ccagtggagg cctgattaca tcctctgggg ctaaccacct cagttgtaac cacgctactg       420
     caaatgcggt agccaaagtc gaaacttcgg cttgtgaagc agtcatgaag catgtgataa       480
     ttacaaatat accccagggg gctaatccct cgttgacctc agtcaacgca agcaggctat       540
     cagattctgg ggagcctgca tcatgtgcga tactaaatgg cgaacctatc tgtacctcca       600
     atctaaatca cggacacaaa atcagaccga aacagacttt taaaatggga accataaaca       660
     tacagacaat gatgaaggtg ggcaagctaa agcaagttct tgacagtatg agagaactcg       720
     ggattggtat actggcacta caggaaacaa gatttaggga tgaaagcaca gtggaatcag       780
     aaggatatgt ggttctgaaa gggaaacccg gtgttggggg gtcaaagcaa ccgtttatgt       840
     ttggtacagc ctttgtagta gatcgcagat acctggatag tatcactgca tggaagggca       900
     taaatgaaag gctgtcatat ctgacaatga aaataggaaa caagacatat acgatagtaa       960
     atgcgcatgc accaactaat gataagaaca aaaaagacaa agcaggaact gaacattttt      1020
     ggtccacttt ggataaggta atgwcagatg tggacaaaag aggtgtcact attttgctag      1080
     gagactttaa tgcgcaaata ggcatggaaa ggaagtttag gggccctgtg ggagattatc      1140
     cagcccacaa gagaacaaac aagaatggtg agagattagt ggacctgtgt aggagacaca      1200
     agatgagaat aatgaccacc cattacaaag ctaaggcaag caagaaaaca acgtgggtca      1260
     gccctggaaa caggattggg gaaaaacagc tagatcatgt agcaatccgt gacaagaatc      1320
     acagcgagat tatgaacaca agagtgagga aaaatagcag gatggaatca gatcactacc      1380
     ttactgaaat aaaatgcaga tggataccca acagagcgaa gaaatgtagg accataaata      1440
     ctcacagaat cgacctagat cttctgaaaa aacacagaga agagtatgca aaggaatggt      1500
     agttcagagt gattggaaga gagtgagaga tatgatggaa gaagaggcag tgcgactggc      1560
     tgctaacaac cagaaaagga agcatgagtg gtggacagat gaatgtgaga atgcagtcga      1620
     gaccaggagg aaagcatgga tgaaatggca tcctgcaaaa agaagcagac tggtcgaatt      1680
     ttcagaatgc gagaaaaatt gctagcaaga cgatcagaaa tgccaagaga agtagatgga      1740
     atgagaaact tgaagaagca aacacagcct tcaagaaaca caaatcacga gtctttttca      1800
     gagaaatgaa gagcagaatt aagggcttcg aggcaagaga accattcgta ataggacaag      1860
     atggcacaat aaagattggc gagaaagagg tgtgcgagga aatggctagg tattttaggg      1920
     atttgctgaa tgccgaagca cctacagtaa agtggacaca cttacgctct agggacgaaa      1980
     gtcaggatag tctagagaat gcacccacca gagcagaagt aacagaggca attaaaaacc      2040
     tcaaaaacag caaggcatca ggaaatgatg gtatctgtgc tgaagagatc aagtggggtg      2100
     ggcctgaaat agaaagaagt atgtacaata taataacgga tatctggaga aataagaaaa      2160
     tacccataga ctggaaagaa gccattataa taccactaca caagaaaggg gacaagaaga      2220
     tactggataa ctacaggggc atctctctct taaacatagg gtacaagatt ttgtcgaaaa      2280
     tcttgctgaa cagagttgaa gaacaactgg ggccgacaat aggagagtac cagtgtggct      2340
     ttagaaaagg gaggaactgt gcagaacaga tatttggtat caaaaggata atagagcaca      2400
     gacacaggaa agggaaaaag acaatagtga cttttgtgga cttcaaaaag gcctacgatt      2460
     cagttgacag aagtactctg cttgatgtgt tggaagacag aggactggat gctacaacac      2520
     atgcaataat aaaggaaacg ttgagcgaca ctactgccag gatcaggcat cgcagtacac      2580
     tgtcagacag cttcgaaata aaaactggag tccgacaagg ggatggactg tcaccaattt      2640
     tatttaacct ggtcttggac gaagtagtga gacaatggag acaactaaat agtaatatga      2700
     agatcaaagg tgtacaaata gggtacaagg tcaaacataa tgcaatagtg gactgcctgg      2760
     cattcgcaga tgacatggca ctgttaaatg agacagaaga agaggcaaag acagcactaa      2820
     aaaatctagc tgaagtagca gaaaaggtcg gactgaagat tgcatataat aagaccaaga      2880
     cattgaacac tgggtctgac tggaagatag atggccaagt ggttgagaaa gtcgagagtt      2940
     ttcgttattt gggagagaag ataactggtg gaatacagag cagcagtagc gcagtagaca      3000
     gggcacagct cttgcagaag cttcggtacg cagtgaaaac aacatatggc aagaaaaatc      3060
     tgtcacggaa tgccaaattg cgacactaca cagcaactgt aagaaatgct gcactgtatg      3120
     catcagaaac gatcacactc ggtaagagag cttgtataca gttggagaag gaggagcgga      3180
     aaattttgag agacatatgg ggcaccaaaa aatggggata tctggataca cagaacacga      3240
     caggaactgt acgaaaattt tgaacctata tcgagcgaga tacggaaaag gaggttacga      3300
     tttgttgggc acatcatgag gatggacgat gagaggttga ctaagaagat atggaatgca      3360
     acatgtcata cgggaaacaa ctgggtgaag gaagtcagag atgattggaa gactgtagga      3420
     ataaaagaaa ggaatctgca ggcactggtg caggacaggg agaagtataa agggttggtg      3480
     gatggtcaca ggtggccgga caccaaaatc aaagtcgtct taacagaaga agaaagaaac      3540
     aagaagcgag agaatgaaga ggtattggga agaaagaaga cgtgcaaaca agccacacgt      3600
     gatcctgaag ggtcctaacg aagcagaaga agaaga                                3636
//
ID   RTE-22_PPo  repbase;    DNA;    INV; 379 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-22_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-379
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3176-3176 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..309
FT                 /product="RTE-22_PPo_1p"
FT                 /translation="HIPLKKLRQQTKIKSVIHYIXKQKWKWAGHIIRCKKE
FT                 KWAKDVTDWCPRGRKRSKGRQRLRWEDEIRKTVGITWKRMTYNRREWQALG
FT                 EASAETHHNLVSNIN"
XX
SQ   Sequence 379 BP; 157 A; 51 C; 80 G; 89 T; 2 other;
     cacataccac ttaaaaaatt acgacaacaa actaaaatta aatcagttat acactacata        60
     mgcaaacaaa aatggaaatg ggcagggcat ataatwagat gcaaaaaaga aaaatgggcc       120
     aaagatgtga cagactggtg cccaagagga aggaaaagaa gcaaaggaag acagcgtctt       180
     agatgggagg acgaaatcag aaaaactgtt ggtataacat ggaaaaggat gacctataac       240
     agaagagagt ggcaagcatt aggggaggcc tctgcggaaa cgcatcacaa tctggtgtca       300
     aatattaact aattattgtt tatattttta ttgtaaaact ttgtaagatt gttgaataaa       360
     ggctattatt attattatt                                                    379
//
ID   RTE-23_LMi  repbase;    DNA;    INV; 3424 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3424
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 272-272 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(683..1306,1240..1455,1459..1614,1627..3312)
FT                 /product="RTE-23_LMi_1p"
FT                 /translation="MSTLTIKAGNKMYTITNVHAPTMDQNRKNPQMVEKFW
FT                 EDLEETMNKIPAKHVKILLGDFNAQLGKEKKYSNITGQHTAHRRTNKNGER
FT                 LINLCKNFNLKIMSTQFEKPRRKLTTWKSPNNSLGEFQIDHVAISKRNSQE
FT                 ILNVKTRKGFFDSDHHLLQIKTRFIPDRKLHKTKTVFRTDPEYLKINKEQI
FT                 TQEISKIAETNWTNFHRKQRTNNTRNLQDSRNQLDELSQKMKDLIKLGQPH
FT                 ENGNTGGGTHCATKHRAEDLAWKNFNSHNHLKIGKLLSQENFFKNYSQGET
FT                 YLRKQPSQRDPGRFHQKQHTKFLQNLQGKHDRIPTTQSLFWILGNNTKKNC
FT                 EILAQYFNKLLNCKSPPEKLHFETPEPNPDSQPPTLHEIIEITKALKNNRA
FT                 PGEDGLIAEIWKLDHAQITPKIHKIIENCWLTEKIPEEWKSALIHPLHKKG
FT                 DKTDPNNYRGISLLPVTYKILSKALLNRLEPQIDPQIGEYQAGFRKNRSCS
FT                 EQIWNLRTILCVRHCRNTTVTFVDFKKAYDSIDRDTLFQTLREMKVDLKTR
FT                 NLIQETLTNTKSKVKFMGELSEPFEIKTGVRQGDGLSPILFNAVLEKIIRT
FT                 WEGEVKGIQLGRNKEKITHIKCLAFADDIAILSNTRTEAQHALEKLHEIAM
FT                 KTGLQISYEKTQFFDTKSSDKLPLKTKYGKILQVSEFKYLGEIMQKSGLNT
FT                 KANEERVSKLQRAYKLTWSHYNKKCISAAAKLRHYNTVVLPEALYASETTS
FT                 TKGMAKIKEIEKQERKILRKIHGAVFRENIWQKRPTEELYRHSETITTHIR
FT                 KRRAKFFMHIARMNDTRLTKRIFNIISTSKLGTSWYKETTEDLKTLNISIE
FT                 DIQDRKTCREKIRNQKVDFKSQHKNNRRKWTENKRRHKVKE"
XX
SQ   Sequence 3424 BP; 1354 A; 782 C; 608 G; 680 T; 0 other;
     ggttactaga cccccatcgg gcgcctcccc aggttgcgga taggggaaag cctcccagat        60
     atgggtggta ctggggaaat gaaatactca gggcgacaaa actagcacaa aaatccagac       120
     acgtctgtgt gagattcacc ggtactctgg tcagcgtctg ttcgctgagt cggcgcggct       180
     gcttctttct tctggacttc aaaactccag tcgtaagcct gtgttctctt cggagctcac       240
     cacaaaaccc atttcaaacc aaaaatcatg gcagcacata aggaaaaaat cgctaccccg       300
     ggcttcggtt aagaaactga gaaatggacc tgatcatcgg attccggggg atcaggcctg       360
     tcatgaagag aagaatcgga gcttctcaaa aaccttgaaa atgaaaagta tacatcggca       420
     cacttaacac aaacacactg caaaaagttg gtaaactcaa aaacctcacg acacccttga       480
     taaatttgac ataaaaattt gtgctataca ggaaacacga ttcagagacg aaaatcactt       540
     cgactcggaa aactatacaa ttttcaaagg aaaacccgcc actaaaattc ccaattcaaa       600
     ccgatatatc tttggtacag gattcgtcgt acacaaatcc atcaaagatt ccatagtaaa       660
     tctccactcc aagaacgaga aaatgtcaac cctcacaata aaggcaggaa acaaaatgta       720
     cacaataacc aatgtacatg cacctacaat ggatcagaac aggaagaacc cacaaatggt       780
     agaaaaattc tgggaagacc ttgaagagac catgaataaa attcctgcaa aacatgtgaa       840
     aattcttcta ggtgatttta acgcccagtt gggcaaggaa aagaaataca gtaacatcac       900
     aggacaacat accgcccaca gacgcacaaa caagaacggc gaaaggctga taaatctctg       960
     taaaaatttc aaccttaaaa tcatgtccac ccaatttgag aaaccccgcc ggaaactgac      1020
     aacatggaaa tcacccaaca attccctggg tgaatttcag atagaccatg tcgctatatc      1080
     taagagaaat tcacaggaaa tcctaaatgt gaaaacaaga aaaggctttt ttgactcgga      1140
     tcatcatctg cttcaaatca aaacacgatt tatcccagac agaaaacttc ataaaactaa      1200
     aacagtcttc agaacagacc cagaatatct gaaaattaac aaagaacaaa taacacaaga      1260
     aatctccaag atagcagaaa ccaactggac gaactttcac agaaaatgaa agacctaata      1320
     aaactaggcc aaccccacga aaacggaaac acaggtggtg gaacgcattg tgcgaccaag      1380
     catcgagcag aggaccttgc ctggaagaac tttaacagtc acaatcacct gaaaattggg      1440
     aaacttttaa gtcagtgaga aaacttcttc aaaaactatt cgcaaggaga aacgtatcta      1500
     cgaaaacagc cgtctcagag agatccagga agatttcacc aaaaacaaca cacgaaattt      1560
     ctacagaacc ttcagggaaa acatgaccgg ataccaacca cccaatctct gttttaaaaa      1620
     acctgatgga tccttggaaa caacacgaag aagaactgtg aaattctcgc tcaatacttt      1680
     aacaaattgc tcaactgcaa aagtccccca gaaaaattgc actttgaaac tcctgagccc      1740
     aatccagact cacagccacc gaccctacat gaaatcattg aaataacgaa agcactgaaa      1800
     aacaacagag cacccggtga agacggtctg atcgcagaaa tttggaaatt ggatcatgca      1860
     caaatcacac ccaaaatcca caaaattatt gaaaactgtt ggctcacaga aaaaatcccg      1920
     gaagagtgga agtcggctct cattcaccca cttcacaaaa aaggagacaa aactgatcca      1980
     aacaactaca gaggaatctc cctgctccca gtcacctaca aaattctctc caaagccctg      2040
     ttaaaccggc tggaaccaca gattgaccct caaattggcg aatatcaagc gggcttcaga      2100
     aaaaaccgtt cctgcagcga acagatttgg aatctccgca caatcctatg cgtaagacac      2160
     tgcaggaata ctacagtaac atttgtggac ttcaaaaaag cctatgactc cattgaccga      2220
     gacacactct tccagactct aagagagatg aaggttgacc ttaaaacccg gaatctaatt      2280
     caagagaccc tcactaacac caaatccaaa gtcaaattta tgggagaatt atcagagccc      2340
     ttcgaaatca aaaccggcgt ccggcaaggc gatggtctct cacccatcct attcaatgca      2400
     gtcttagaga aaattattcg tacatgggaa ggagaagtca aaggaattca actaggcaga      2460
     aataaggaaa agataaccca cataaaatgc ctcgcttttg cagacgacat cgccatactc      2520
     tcgaatacca gaacggaagc acaacatgca ctagaaaaac tccacgagat agccatgaaa      2580
     accggtctac aaatttctta tgaaaaaaca caattttttg atacaaaatc atcagataaa      2640
     ctcccactaa aaacaaagta cggaaaaatt ctacaagtca gtgagtttaa atatttagga      2700
     gaaatcatgc aaaaatctgg gctaaacaca aaagcaaacg aagaaagagt ctcaaaatta      2760
     cagagagcct ataaactcac ctggtcccac tacaataaaa aatgtatttc cgcggccgca      2820
     aaactacgac actacaacac agtagtctta ccagaagctc tctacgcatc agaaactacg      2880
     agcaccaaag gaatggcaaa aatcaaggag attgaaaaac aagaaaggaa aattctgaga      2940
     aaaatccacg gtgcagtttt tagagaaaat atctggcaaa aaagacccac agaagaacta      3000
     tacagacact ctgaaacaat cacgacacat atcagaaaac gcagagcaaa atttttcatg      3060
     catatcgcca gaatgaatga caccagacta actaaaagaa tattcaacat aatttctaca      3120
     tcgaaactgg gcacatcttg gtacaaagaa accacagaag acctgaaaac attaaacatc      3180
     tctatagaag acatacaaga ccgcaaaacc tgtagggaaa aaatcagaaa ccaaaaagtt      3240
     gactttaagt cacaacacaa aaacaacaga cgaaaatgga cagagaacaa aagaaggcac      3300
     aaagtgaaag aatgaaaggt ttttgggaag aaaaaaagaa gaaaaaagac gggaataaaa      3360
     gctagatttt tgtgttttta gcgctctcct taaggggaat gtacgcaaat aataataata      3420
     ataa                                                                   3424
//
ID   RTE-24_LMi  repbase;    DNA;    INV; 3253 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3253
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 273-273 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           428..3238
FT                 /product="RTE-24_LMi_1p"
FT                 /translation="MDRRKVKILGLSETKWKGSGKKTLRNGYILHWCGSQT
FT                 ETRNGVALLLHKDVAIHTDIRYVSDRIIQMKLHVDNTYITIFQVYAPQTGC
FT                 TADEKEQFLENLEDLIVEDNVIIMGDLNAQVGKERQGCENIIGPHGYGKRN
FT                 PEGEQLLDLCVRNKLIIKNTWYQKRESHKITRYSWDGQHKTVIDYIITDQK
FT                 ASQTVKVIPSECMDSDHRLLTADLKNVRVPLVKYKKMPKIKTWLLRDPEKK
FT                 QEYQKKIKDRIPKTEKLGVEEEWKLFKDTLVTEAVHICGKTSAAQREKETP
FT                 WWNDRVKTAIKERNVLKKKLDREKQNRVDVRNDTEIERLSQEYRNKKLAVK
FT                 RLIQNEKDKCWDDFTTKLQEDCQGNKKLLYKLVNDKRYERTNIVVLETEEG
FT                 KLLRTESEIRSEMRNHFNSLLNGNVDSSDDSDCPAEETPEVLQPLTWLEVE
FT                 SALRNMRNGKSPGFDELSSDMMKAAGTPGLQWIYRVLSVIWTNNKIPDDWT
FT                 KGIIIPLFKKGDRKKCGNYRGITLLSHTLKLLEKIIETRLRKIVEPLLEEE
FT                 QHGFRKGRSTIDLIFAVRILAEKYWEHGKNLVMVFLDLEKAYDSVPRNKIW
FT                 KCLEDLKVPNYLIDRVKMLYQTCNSSVQIGNGRSEWFETKRGVQQGSALSP
FT                 LLFIIVMDRMLKSIKETANESRSLVFADDVVIWGETEKEVQKSLTVWNNKF
FT                 KEFNLKISKTKTVEMTINREGTSSNIYLEGTKIKSVSHFQYLGSIFSKDNT
FT                 IRQEILNRTQKASNFYMQVRNLLWDKKVPQAAKLTLYNTYFTPILIYGMET
FT                 CTLLKKDYSRIQATEMRFIRTMNQSTRRDKIRNEVHRETAGIRVPIANILG
FT                 KRRLQWYGHVMRMDSTRTAKKYFRMEVGGRRPRGRPRRRWIEAVKSDIEKN
FT                 GFNWDDVQDQMLYQDRMRWRALVSHTRETGDGK"
XX
SQ   Sequence 3253 BP; 1191 A; 586 C; 789 G; 686 T; 1 other;
     gtctcccaca aggccaaccc ctcgtccacg tcgtgggaga cgggcaacgg cgcgaagtaa        60
     gggattgtct gtaagggtga agtacagtgg agactatgcg agttccgcga ccgctacggc       120
     agctgtgaag gccttacagg aaccctgaaa agcggcggct aacggggctc tggtgaagcc       180
     gtgttaggcg tagctggcca gcggtggatt aaagcgtgct ttcaagacta aaacaagcct       240
     cggatgtata aaagaaatta ctggacatga cacctctcca gggacctcac gaaagtatga       300
     cggccaaaaa cctgaagcat attggagacs cctgaagaca caaaaaccaa caaagaaaca       360
     aaaactcaga cttggaactc taaacatcct cacgctcact ggtaaatgtg aagagcttgt       420
     tgacctaatg gacaggcgca aggtaaagat attaggccta agtgagacca agtggaaagg       480
     gtctggcaag aaaaccctca gaaatggata tatactacac tggtgtggta gtcaaacaga       540
     gaccagaaat ggagtcgccc tgctcctgca taaagatgta gccatacata cggacatcag       600
     gtatgtgagt gatcgaatca ttcagatgaa actacatgtt gacaacacct acataaccat       660
     cttccaagtc tatgccccac aaacaggttg cacagctgat gagaaagaac agttcctgga       720
     aaacctagag gacctaatag tggaagataa tgtcatcatc atgggtgatc taaatgccca       780
     agtgggtaag gagaggcagg ggtgcgaaaa tattatcgga cctcatggat atggtaagag       840
     aaaccctgag ggagaacagc tgctagactt gtgtgtacga aacaagctaa tcatcaagaa       900
     cacttggtat cagaaaaggg agagtcacaa aataacccgt tacagctggg atggacaaca       960
     taaaactgtc atagactaca ttataacaga ccaaaaagct agtcagactg ttaaagttat      1020
     tccaagtgaa tgtatggaca gtgatcaccg actgttaact gcggatctga agaatgtacg      1080
     agtcccatta gttaagtaca agaaaatgcc aaagattaag acttggctgt tgagagaccc      1140
     tgaaaagaaa caagagtacc agaaaaagat caaggataga atacccaaaa ctgaaaaact      1200
     tggggtagaa gaagaatgga agctctttaa agacactctt gttacagaag ctgtccacat      1260
     ctgtgggaaa acaagtgcag cacaaagaga gaaggaaaca ccctggtgga atgacagggt      1320
     aaagacagca attaaagaaa gaaatgtgtt aaagaagaaa ttagaccggg aaaaacaaaa      1380
     tagagtagat gtaagaaatg acactgaaat tgaacgtctg tctcaggaat atcgaaacaa      1440
     gaagttggct gttaaaaggc tgatccaaaa cgagaaggat aaatgttggg atgacttcac      1500
     caccaaatta caagaagact gtcaaggcaa taaaaaactg ctatataagt tagtcaatga      1560
     taaaagatat gagcgtacta acatcgttgt gctagaaact gaggaaggga agctgttgag      1620
     aacagaatcc gaaattagga gtgaaatgag gaaccatttc aactcgctgt tgaatgggaa      1680
     tgttgacagc agtgatgata gtgattgtcc agctgaagaa acaccagagg ttctacaacc      1740
     attaacttgg ctggaagttg agtctgctct gagaaatatg cgaaacggaa agtctccagg      1800
     gtttgatgag ctaagctcag atatgatgaa ggcagccgga acacctggcc tacaatggat      1860
     ctacagagtt ctgtcagtca tctggacaaa caacaaaatt ccagatgact ggacaaaagg      1920
     aatcatcatt ccactgttta aaaaaggaga ccgaaagaag tgtggaaact atagaggtat      1980
     caccctactt tcacataccc taaagctgct ggaaaaaatt atagaaacca gacttaggaa      2040
     gatagttgaa cccttattag aagaagaaca gcatggcttc aggaaagggc gaagtactat      2100
     agacctcatc tttgcggtaa ggattttggc agagaaatac tgggaacatg gaaagaactt      2160
     agtgatggtg ttcttagacc ttgagaaggc atatgatagt gtccctcgca ataaaatatg      2220
     gaaatgcctg gaagatctaa aagtgcccaa ttacctgatt gacagagtaa agatgctgta      2280
     tcaaacttgc aatagtagtg tccaaatagg aaatggtcgc tctgaatggt ttgagacgaa      2340
     gaggggagtc cagcagggaa gtgctctatc accactcttg tttattattg taatggacag      2400
     aatgctaaaa tctattaagg aaactgcaaa tgagtcgaga tcactggtat ttgcagatga      2460
     tgttgtaata tggggagaaa cagaaaaaga agtgcagaag agcctgactg tctggaacaa      2520
     taaatttaaa gaatttaacc tgaaaatcag caagaccaag acggttgaga tgaccataaa      2580
     cagagaggga acaagttcaa acatctactt ggagggaaca aaaattaaat cagtttccca      2640
     ctttcagtac cttggaagta ttttctccaa ggacaacacc atccggcaag aaatcctcaa      2700
     cagaacacaa aaagcatcaa atttctacat gcaagttcgg aatctactct gggacaaaaa      2760
     agtaccccag gcagcaaagt taactttgta taacacttac ttcactccaa tccttatata      2820
     tggcatggaa acatgtacat tgttaaaaaa ggattacagc agaatccaag caacagaaat      2880
     gaggtttatc aggactatga atcaaagtac caggagagac aagatcagaa atgaggtaca      2940
     cagggaaaca gctggtatca gggtccctat tgcgaacatc ttggggaaac gaagactgca      3000
     gtggtatggc catgtaatga gaatggatag cacaagaaca gctaaaaaat acttcagaat      3060
     ggaagtggga ggaagaagac caagaggaag gccaaggaga cgatggatag aggcagttaa      3120
     atcagacata gagaagaacg gttttaactg ggatgatgtc caagaccaaa tgttatatca      3180
     agatcggatg agatggagag cgcttgttag ccacacccgg gaaactggag atggaaaatg      3240
     atgatgatga tga                                                         3253
//
ID   RTE-24_PPo  repbase;    DNA;    INV; 439 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-24_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-439
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3177-3177 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..420
FT                 /product="RTE-24_PPo_1p"
FT                 /translation="SVLLYGCETWKVTKATTQRVQVFINRCLRQILGIFWP
FT                 ETIRNEELLTRCREQPIGQQIKRRKWLWIGHTLRREPSHIPREALEWIPQG
FT                 TRKRGRPKQTWRRSVAADLKVIGLSWSEIQRRAQDRASWRRTVDALCPTLG
FT                 T"
XX
SQ   Sequence 439 BP; 121 A; 117 C; 127 G; 74 T; 0 other;
     tctgtcctgc tatatgggtg cgaaacatgg aaggtgacaa aagctacaac gcagcgggtc        60
     caagtcttca tcaatcgctg cctccgacaa attctaggaa tcttctggcc agaaacgata       120
     cgcaacgaag aactcctgac acgttgtaga gagcagccga tcggccagca gataaaacga       180
     cgcaagtggt tatggattgg ccatacgctt cgccgggaac ccagccacat tcccagggag       240
     gccctggagt ggatcccaca aggaacacga aagcgtggcc gccctaaaca aacctggcgg       300
     cgttcagtgg cggccgactt gaaggtaatc gggctgtcat ggtccgagat acaacgcaga       360
     gcccaagaca gagcgagctg gcggcgtact gtggacgccc tctgccccac tttggggaca       420
     taggaataga agagagaga                                                    439
//
ID   RTE-25B_PPo repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-25_PPo;
KW   RTE-25B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-308
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3178-3178 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated. ~80% identical to
CC   RTE-25_PPo.
XX
SQ   Sequence 308 BP; 126 A; 35 C; 37 G; 110 T; 0 other;
     aatacagttt ttggcaaata taacagtaaa acaatttgag agtacaaaac aaaataaaac        60
     attaacgatg ttataattgt tctaatgtcc ccaatttaat gtaaacactt ttatagctgt       120
     gaaaaatttt ttttaatgtc ataaaaaatt actttaaagt ttattataaa aagtctgcat       180
     ttggaggagg cttttaccct aaacggggtc catacttact acacaatgta tacatattat       240
     tttgtacgtt tataagttat atttctgtat ggaattaata aagctaataa ataaataaat       300
     aaataaat                                                                308
//
ID   RTE-25_LMi  repbase;    DNA;    INV; 3267 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3267
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 274-274 (2015).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus. 5'-end 117-bp (promoter) is 90%
CC   similar to that of SARTTc4.
XX
FH   Key           Location/Qualifiers
FT   CDS           269..3163
FT                 /product="RTE-25_LMi_1p"
FT                 /translation="MPRKNWNCGRRTGDEKRKMMFGCWNVQGISTKIDLLP
FT                 AELDMFNIDVVVLSETKRKGKGEEELDNYVHIWSGVSKAVRAKAGVSIMIQ
FT                 KKWKKRITNWTFINERIITVEMTLFAREVVIIGVYAPTNDTKDKEKDAFWD
FT                 TLRETIEKIPRRKELIIMGDMNGRVGIRESCKIVGKHGEAEYNDNGERLID
FT                 ICAQFDLKITNTFFKHKDIHKYTWQQNTKELRSIIDYIIIRQTSSFKAADV
FT                 RSYRGAQCGSDHYLVKMKSFWPWKNATNDTSNINKMNCSEKVQNVHFNIDS
FT                 LQDESIRTFFKARMERTLDESFEGSTEEIYEYIKTKVKNVASEVLGIKENN
FT                 PKRAAEWWSEEIETSVKEKRNAFVQWLNDKSEGTRSKYKEKKNEVEKKIRL
FT                 AKNEAWERTCANVNSKLGFGRAKEAWSVLKALRQDTKGKSNLQLVTQKEWE
FT                 EYFKKLLNEDRDEYLEEGTVEENEHHDDEIXISESEVLQVLRTGKNGKSPG
FT                 PGNINMEFLKYGGDKIVKLILQLFNKMXHGDSVPKEMKLGYISTIFKKGDR
FT                 KICSNYRGICVTNTLMRIFGKIIKNKLEKNFRTQQEQCGFTAGRSCVDHIF
FT                 TLRQILEKHREKSKNVGLIFIDLEKAYDTVPRKLLWRALHRANINTSLIKI
FT                 IEQMYKDNICQVKIGNTLSQKFRTSKGLLQGCPMSPTLFKIYIDICLRTWS
FT                 QKCNSMGLEIRDGVYLHHLLFADDQVVIAQDGEDANYMCNQLAIAYKNWGL
FT                 KINYQKTEYLTNDPHELRIEGKKIKKVNTFCYLGSILETEGKSDSEINKRI
FT                 SSGRKVIGMLNSVLWSRNVMNRTKKIIYKSIFESAVLYGAETWTINQKHTK
FT                 KLQALEMDFWRRSARISRKEKRRNTEVIKRMEIIERIDEVMDRKKLRWYGH
FT                 VRRMEDTRIPKLVLEWQPEGRRRRGRPVTTWIKNVQLTMNRLGAEEEDTQD
FT                 RHTWRNIVNN"
XX
SQ   Sequence 3267 BP; 1294 A; 474 C; 734 G; 762 T; 3 other;
     cccgtgtgga gtttgctggt cttccatcgg gcacctcccc aggtggcgga taggggaatg        60
     ctcaccagat atggtgggta ccggggaaat aaaatacccg gggtggacca aaaccagcaa       120
     ctgctgcctt gtagtatgat attggcttat caaaggctaa aggaagaaaa ccttgaatac       180
     aaattacctg gtcctccagg ttgggggttg tgcagtgggc cagctcctca ctcacataaa       240
     aatataaaat gctaaaaaac ctaataatat gcctcggaaa aattggaact gtggacgacg       300
     aactggcgat gaaaaacgga aaatgatgtt tggatgctgg aatgtgcaag gtatttccac       360
     taaaatagat ttactacctg cagaacttga catgttcaac atcgatgttg ttgtactttc       420
     tgaaacaaag aggaaaggca aaggagaaga agaacttgac aattatgtac atatctggag       480
     tggtgtatcg aaagctgtaa gagccaaagc aggagtctcc attatgatac agaaaaaatg       540
     gaaaaaaaga atcacaaatt ggacatttat caatgaacgt attattactg ttgaaatgac       600
     attatttgcc agggaagttg tgattattgg agtatatgca cccacgaacg atacaaaaga       660
     taaggagaaa gatgcattct gggacaccct cagagagact attgaaaaaa tcccaaggag       720
     aaaagaactg attatcatgg gagacatgaa cggaagagta ggaattagag agtcgtgtaa       780
     aatagtagga aaacatgggg aggcagaata taatgataat ggagaacgac tgattgatat       840
     ttgtgcacaa tttgatctaa aaattaccaa cacatttttc aagcacaagg acattcataa       900
     atatacttgg caacagaaca ctaaggaact tcgttctata atagattata ttatcattag       960
     acaaacaagt agtttcaagg cagcagatgt cagatcttat agaggagccc aatgtggatc      1020
     agaccattat ctagtaaaaa tgaaatcttt ctggccatgg aagaatgcaa cgaacgacac      1080
     aagtaacata aataaaatga actgtagtga gaaagttcaa aatgtacatt ttaatattga      1140
     cagcctacaa gacgaaagta taagaacatt ctttaaggcc aggatggaaa ggacactaga      1200
     tgagtcattt gaaggaagca cagaagaaat atacgaatac ataaaaacta aagtgaaaaa      1260
     cgtagcatca gaggtgctgg gcataaaaga aaacaacccc aaacgtgcag cagagtggtg      1320
     gtcagaggaa atagaaacat cagttaaaga aaaacgaaat gcattcgttc agtggttgaa      1380
     tgataaatct gaaggaacaa gatctaaata caaggaaaaa aagaatgaag tggaaaagaa      1440
     aataaggtta gcaaagaatg aagcatggga aagaacatgt gccaacgtta atagtaaact      1500
     gggwtttggg agagcgaaag aagcatggtc agtattaaaa gcgcttcgac aagatacaaa      1560
     aggcaaatcc aatcttcaac tggtaacaca aaaggagtgg gaagaatatt tcaaaaaatt      1620
     attgaatgag gacagagacg aatatctaga ggaaggaaca gtggaagaaa atgaacatca      1680
     tgatgatgag atccwaattt cagaaagtga agtacttcag gtattaagga cagggaagaa      1740
     tggtaaatca cctggaccag ggaatatcaa tatggagttt ctgaagtacg gtggtgacaa      1800
     aattgtaaaa ctgattttgc agttattcaa taaaatgwta catggagatt ctgtacctaa      1860
     ggagatgaaa ctgggttata ttagtaccat atttaagaaa ggggatcgca aaatttgctc      1920
     gaactatcga ggaatttgtg ttacaaacac actaatgagg atttttggga aaataattaa      1980
     aaataaactg gaaaaaaatt ttagaaccca acaagaacaa tgcggtttca cagctggtag      2040
     atcatgtgta gaccatattt tcacattacg acagattttg gagaaacata gagaaaaatc      2100
     gaaaaatgtt ggacttattt ttatagatct agaaaaagcg tatgatactg ttccaaggaa      2160
     actactctgg agagcactac atagggcaaa cataaatact tctttaatta aaataataga      2220
     acagatgtat aaagataata tttgccaagt gaaaattggt aatacacttt cacagaaatt      2280
     tagaacaagc aaaggtctgt tgcaaggctg tcccatgtca ccaacattat tcaaaatcta      2340
     tatagatatt tgtctgagaa cgtggtcaca gaaatgtaat agtatgggac tagaaataag      2400
     agatggagtt tatctacatc atttattatt tgctgacgat caagttgtca tagcacaaga      2460
     cggggaagat gcaaactaca tgtgtaatca actagcaata gcatacaaaa attggggtct      2520
     gaagattaat tatcaaaaaa cagaatactt gactaatgat ccacatgaac tacgcataga      2580
     gggaaagaaa ataaaaaaag ttaacacttt ctgttatttg gggtccattt tagaaactga      2640
     gggaaaatcc gactcagaga ttaataaaag aattagcagt ggaagaaagg tcattggaat      2700
     gctcaactca gtcctatgga gcagaaacgt aatgaacaga acaaaaaaaa tcatatataa      2760
     atctatattt gagagtgcag ttctgtacgg agcggaaacc tggaccataa accagaagca      2820
     cactaagaaa ctacaagctt tagagatgga tttctggaga agatcggcca gaatttccag      2880
     gaaagaaaaa agaagaaaca ccgaagtaat aaagaggatg gaaataatag aaagaataga      2940
     tgaggtgatg gatagaaaga aattacggtg gtacgggcat gtaagaagaa tggaggacac      3000
     cagaataccg aagctggtac tggagtggca acctgagggg agaagaagaa gaggacgacc      3060
     tgtgaccacc tggatcaaaa atgtacagct cacaatgaat agactgggcg cagaagaaga      3120
     ggacacacaa gatagacaca cgtggagaaa tatagtgaat aattagtgta aaaccttatg      3180
     tactaggtgt attcatttct gggcgtatta gtatgttgga ggtaaacctc tgtaatgagg      3240
     acaatctcaa taataaaata aaataaa                                          3267
//
ID   RTE-25_PPo  repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-25_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-132
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3179-3179 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 132 BP; 67 A; 12 C; 17 G; 36 T; 0 other;
     gttggaggag gcttttaccc atcagggatc catacaaaca ttaaaaataa aaaataatat        60
     ataagtctat aataaaacat aagtaattgt atggaatgta tataaagcta aataaataaa       120
     taaataaata aa                                                           132
//
ID   RTE-26_LMi  repbase;    DNA;    INV; 3244 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3244
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 275-275 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(210..1652,1546..2097,2091..3185)
FT                 /product="RTE-26_LMi_1p"
FT                 /translation="MGQLPIHWKKTLPVKKPIRLQQDGYNRRRRRLRKRTV
FT                 LIGVWNVQGLQNKVGEVIKEMEARNQDIVVLPETKKKGHGIERIGPYTHFY
FT                 SGVPKNQRAKRGISILMKNKFNRMVTNWEPIDENLIKININIQEHKITLIG
FT                 VYGISEDEPIRKKDEFYNRLNGVIEDIGKTREIIIAGDFNSRTGSKIGNKI
FT                 IGPFGENVVNDNGNRLIDICEQNSLKILNGFYQHKDIHKYTWHKDTLNQKS
FT                 IIDYIIIKQQTRIKIHDIRAYRGVTLSDHYLVNSKFLFPFRGKNSEENQNC
FT                 TTEDLQTEIKITKYNLNSFENESTVFLYQKRLDEKLIETEFDNTEDQYQYI
FT                 ISKLHESAKEALGETDEKHTXHSLYYWDEEIKKEVKLKKEKYLKWLNTRNV
FT                 QDKIELNAQQAKIRKKVAEAKNKAWEQSCQKIESYIGGKRNTEAWKTIKNL
FT                 RRNSKEXTHIKYITHDSWEKYFQNLLSENRRILGKPEGILKXQHILNILLM
FT                 TLGKNIFKIYYQKTEEFLGNPEYNEITNELPDNYIHLEIETVKSAIKSLKN
FT                 GRATGIGGIPAELLKFGTEKLIELLRNLFERCLNGEDVPNDLKVGYISVIH
FT                 KKGRKDDCKNYRGITVTNTFSRLYGRIIKYFLEQEYKEKEAEEQAGFRAGR
FT                 STIDHIFCLQQIIEKNKKLGRAQPIHLVFVDIEKAYDSVPLPNLWKALLSI
FT                 GINPTIIKAIQNLYKNSISKIKIGKFLSSGFQVTKGLRQGCSMSPTLYKIY
FT                 TEVTLQNWKKKCQTMGIPINDRTIYSLQFADDQLIIAQDYEDIEYMTRKLI
FT                 QEYKKAGLNVNMNKTKYMVIGGINEDLILEEGMGTITTTEEYKYLGVKITN
FT                 DGKQEKEIRSRINAGKTTISLLNGILWDKHITTDNKIRIYKTIVRSIITYG
FT                 SEVWTTKWQLKSKLLATEMDFWRRSARISRRERIRNEVIREKMKCKNSIIE
FT                 FIEHKHLKWYGHVRRMGQERLPKCILDWTPNGRRKKGRPPTTWMQEVQSAM
FT                 RKNNIPEDLWEDREEWRTIIXNLM"
XX
SQ   Sequence 3244 BP; 1411 A; 430 C; 624 G; 776 T; 3 other;
     gtggagttgc tagtctccca tcgggcacct ccccaggtgg cggatagggg aatgctcacc        60
     agatatggtg ggtaccgggg aaataaaata cccggggtgg accaaaacta gcacctactg       120
     ccttgtagtt aggtattgga ttaccaaagg ctaaaggaag aaaaccttga tcaaaaatta       180
     cctggccctc caggttgggg gttaatgcaa tgggccaact ccccattcat tggaaaaaaa       240
     ccttaccagt taaaaagcct ataagattac agcaggatgg atataataga agacgaagaa       300
     ggctacgaaa acggactgtc ttaattggtg tatggaatgt acaagggtta caaaataaag       360
     taggagaagt gattaaagaa atggaagcta gaaatcagga tattgttgta ctcccagaaa       420
     caaagaaaaa aggacatggc attgaaagaa taggaccata tacacatttc tatagtggtg       480
     taccaaaaaa tcaaagagca aaacgtggga tatcgatatt gatgaaaaac aaattcaaca       540
     gaatggtcac aaactgggaa cctatagatg aaaatctgat taaaattaac attaatatcc       600
     aggaacacaa aattactctt ataggagtat atggaataag cgaagatgaa ccaattcgta       660
     aaaaagatga attttataat agattaaatg gagtcataga ggatattgga aaaacaaggg       720
     agattatcat tgcaggggac ttcaacagta gaacaggaag taaaattgga aataaaatta       780
     taggaccatt tggagaaaat gtggtgaatg ataatggtaa tagacttatt gatatttgtg       840
     aacaaaattc attaaaaata ctaaatggct tttatcaaca taaagacatt cataaatata       900
     catggcataa agatacactg aatcaaaaat caataataga ttatattata attaaacagc       960
     aaacaaggat aaaaatacat gatataagag catatagagg ggtcactctt agtgatcatt      1020
     atttagtaaa ttccaaattt ttattcccct tcagaggaaa aaatagtgaa gaaaatcaaa      1080
     attgtactac agaagattta caaacagaaa taaaaattac taaatataat ttaaatagtt      1140
     ttgagaatga aagcacagta tttttatatc agaagagact agacgaaaaa ctgatagaaa      1200
     cagagtttga taatacagaa gatcagtatc agtacatcat aagtaaacta catgaatctg      1260
     ccaaagaagc attaggagaa acagatgaaa aacataccam ccattcatta tactactggg      1320
     atgaagaaat caagaaagaa gtgaaattaa agaaagaaaa gtatttaaaa tggttaaaca      1380
     ccagaaatgt tcaagataaa atagaactta atgcacaaca agccaaaatc cggaaaaagg      1440
     tagcagaagc aaaaaacaaa gcttgggaac aatcatgtca aaaaatagaa tcctatattg      1500
     gtggcaaaag gaacacagaa gcatggaaaa caataaaaaa tttaagaagg aattctaaag      1560
     aawcaacaca tattaaatat attactcatg actcttggga aaaatatttt caaaatctat      1620
     tatcagaaaa cagaagaatt cttgggaaac cctgaatata atgaaattac aaatgaacta      1680
     ccagataatt acattcattt ggaaatagag acagttaaaa gtgcaataaa atctttaaag      1740
     aatggaaggg ctacaggaat tggaggtatt cccgcagaat tattaaaatt tggaacagaa      1800
     aaattaattg aattgttaag aaaccttttc gaaagatgtt taaatgggga agatgtacca      1860
     aatgatttga aagtaggata tatttcagtg atacataaaa aaggaaggaa agatgattgt      1920
     aaaaattata ggggaataac agtgaccaat accttcagta gattatatgg aagaattatt      1980
     aagtacttct tagaacaaga atacaaagaa aaggaggctg aagaacaagc aggttttaga      2040
     gctggaagat caacaattga tcatattttt tgcctacaac aaataattga aaaaaattag      2100
     gtcgggcaca acctatacat ttggtattcg tagatataga aaaagcctat gatagtgtgc      2160
     ctttacccaa tctatggaaa gctttactgt caataggaat taacccaaca ataataaaag      2220
     caattcaaaa tttatataaa aattctattt caaaaataaa aattggtaaa tttctgtcat      2280
     ctggattcca agtcacaaaa ggattacgtc aaggatgtag catgtcacct acattgtata      2340
     aaatatatac agaggtaacc ttacagaatt ggaagaaaaa atgtcaaact atgggaatac      2400
     caataaatga cagaacaata tactcattgc aatttgcaga tgaccaactg attatagccc      2460
     aagactatga ggacatagag tatatgacca ggaagctgat tcaggaatat aaaaaagcag      2520
     gtctaaatgt caacatgaat aaaacgaaat acatggtaat tggtggaata aatgaagact      2580
     taatattaga agaagggatg ggaacaataa caactacgga ggaatataaa tatttaggag      2640
     tgaaaattac aaatgatggg aaacaggaaa aagaaattag atcaagaata aatgcaggaa      2700
     agacgacaat ttctttgttg aatggaattc tctgggacaa acacataact acagataaca      2760
     aaataaggat atataaaaca atagttcgga gcattattac atatggttca gaagtgtgga      2820
     caacaaaatg gcaactgaaa tcaaaattat tagccacaga aatggatttc tggagacgtt      2880
     cagcaagaat atcaagaaga gaaagaataa gaaatgaagt aatcagagaa aaaatgaaat      2940
     gtaaaaattc aattattgaa ttcatcgagc acaaacatct aaaatggtat ggacacgtca      3000
     gaagaatggg acaagaaagg cttccaaaat gcatactcga ctggacaccg aacggaagaa      3060
     gaaaaaaggg acgaccacct accacatgga tgcaggaagt tcagtcagca atgaggaaga      3120
     acaacattcc tgaggactta tgggaggaca gagaagagtg gagaacaata attmgtaact      3180
     taatgtaatc taatataggt gctggaaaaa tgtactgaca ttgtaaaacc agaataataa      3240
     ataa                                                                   3244
//
ID   RTE-26_PPo  repbase;    DNA;    INV; 246 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-26_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-246
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3180-3180 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. 5'-truncated.
XX
SQ   Sequence 246 BP; 102 A; 32 C; 71 G; 41 T; 0 other;
     aatgggatgg gcggacacac tagggacaaa atggagaaat gaccatggta tccagaaggt        60
     aaaaggaaaa gaggcagacc aaaagatggg atgacgacat cagacagttg caggagtgac       120
     atggacagag tggcaagaga aaggagcgag tggaaaaggt tggaggaggc ctatgtcgat       180
     ggcaaacaga tctacaacaa ataaaaaaga acaaatccta gagtaataat ttatgtaatt       240
     ttataa                                                                  246
//
ID   RTE-27_LMi  repbase;    DNA;    INV; 2814 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2814
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 276-276 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(93..224,228..356,360..488,455..814,949..1278,
FT                 1176..1976,1868..2311,2322..2444,2411..2695)
FT                 /product="RTE-27_LMi_1p"
FT                 /translation="MLHSGCIPFHSGNRDQNXRSGALMSQXAXPRRYGFWP
FT                 FPIQLPCNLVPRVNLNLFKYMHQLQMQMNKKWTLSITKSKKYSPYKTPRNY
FT                 NNGRLQCQVGKCRYEDLVGPFGLGTRNERGDRLLQFCQEEKKSPATILPRR
FT                 KKMKVTNTWFKLPPRRLYTWKSPADNKDNIVRNQIDYILINKRFGTSVTRA
FT                 STYPGADVPSDHILLVASLKTKLVKHKKTTQQRKIAYEKLKQPELRSEVSK
FT                 DINNKIVTQTRKYKAQSDQTNYNNIQKLIRSKIRAAKNEWLQHECEEIESL
FT                 QASHDDFNLHKKLKETAGIYRRKNISLLTNKNNKIVLMPLRRKRYGKTTLR
FT                 TSFRMIDQMLRLLGTIINSFDAIEKKEIWEDYIKNLFSDDRPNVETSRNNN
FT                 LTGPPIMKEEIEKAIKNSKTNKATGPDEIPVELIKLLDEEGIKVLHKLFNK
FT                 IYDTGHYPAEWLLSTFIPLPKKRNARKCEDHRLISLMSHCLKIFLRVIHQR
FT                 LYKKCEKFIGETQFGFRKGLGTREAIVALQVLVQNCYDQGKNVGLCFIDYE
FT                 KAFDRVQHHKLMEILKRIDIDEKDIRCIENLYWNQTAQVKFDNEVTTWSIY
FT                 VEESDKDAYCHPCYLTYTLRVFFRRHLMMGHDLVNICRGVRQGCILSPLLF
FT                 NLYSESIFQEALDDVEKGIKVNGVYINNIRYADDTVLIADNLDDLQQLVNI
FT                 VGDYSSTLGLNINIKKTNFMIVTRESDSFKDANLQFQGSVIQRVSKFKYLG
FT                 TWLCEDWRTDMEIKCRIENARTPSEILTSTDLDLNLRVRFVKCYIWSVLLY
FT                 GSEGWTLNTTTTRSRMDTKYDNNKKLEAFEMWIYRRMLKIPWTARITNTKV
FT                 LERMNKQREMLTVFKRRKTAYLGHILRNTKYMLLQLIIEGKIEEKEDKGEE
FT                 EHPGWTI"
XX
SQ   Sequence 2814 BP; 1083 A; 495 C; 550 G; 683 T; 3 other;
     gaagcaggaa aattagcaaa cattatccaa ggagtgacac gactaagtat tatatattgg        60
     tatagcagaa acctggtggc ctgacaggaa atatgctcca cagtggatgt ataccgtttc       120
     attctgggaa tcgggaccaa aatcamagga gtggggcgtt aatgtctcag aktgctmttc       180
     caaggcgtta tggattttgg ccctttccga tacagttgcc ttgttaaaac ttagtgccaa       240
     gagtgaacct caacttattc aagtatatgc accaacttca gatgcaaatg aacaagaagt       300
     ggactctttc tataacgaag tcaaagaagt attcccctta caaaacacca cgaaattaat       360
     ataataatgg gagacttcaa tgccaagttg ggaaatgcag atatgaggat ctggtaggtc       420
     cttttggttt aggaacacga aacgagagag gtgatcgcct gctacaattc tgccaagaag       480
     aaaaaaaatg aaagtcacta atacgtggtt caaattacca cctcgacgac tttatacatg       540
     gaaatctcca gctgacaaca aagacaacat tgtgcgtaac caaatagact atattttaat       600
     taataagcgt tttggaactt cagtaacaag agcatccact tatcctggag cagatgtacc       660
     atctgaccat atactactag tagcttctct aaaaacaaaa cttgtaaaac acaaaaaaac       720
     aactcaacaa aggaagatag cttatgaaaa actcaaacag cctgaactaa gaagtgaagt       780
     tagcaaggac atcaacaata aaatagtgac acaatgaaac ctcttattga ccaagaaaac       840
     agcaccagat atgggaagag atgaaaaaca ttatgctaac cactgctcga gataaaatag       900
     gatacaaaac aagagatcga aaacagtgaa atttttcatt gatgatgaac ccgaaagtat       960
     aaagcccagt cagatcaaac taattacaat aatatccaga agctcattag atccaagatt      1020
     agagcagcaa aaaatgaatg gttgcaacat gaatgtgaag aaattgaaag cttgcaagct      1080
     tcacatgatg attttaactt acataaaaag ttaaaagaaa ctgctgggat atatagaaga      1140
     aaaaacatct ccttattaac caacaaaaat aataaaatag ttttgatgcc attgagaaga      1200
     aagagatatg ggaagactac attaagaacc tcttttcgga tgatagacca aatgttgaga      1260
     cttctaggaa caataattta acaggacctc caatcatgaa agaggaaatc gagaaagcca      1320
     tcaaaaactc aaaaaccaat aaagccacag gaccagatga aattccagtc gaactcatta      1380
     aacttcttga tgaagaaggt atcaaagtcc tacacaaact ctttaacaaa atttacgaca      1440
     caggtcatta ccctgccgaa tggctattat caactttcat tcccttgcca aagaagagga      1500
     atgcgagaaa atgtgaagat cacagactca ttagtcttat gagccattgt ttgaaaatat      1560
     ttctgagagt catccatcaa aggctgtaca aaaaatgtga gaaattcatt ggtgagacac      1620
     agtttggatt tagaaaaggt ttaggcacaa gagaagcaat agtcgcacta caagttctag      1680
     tacaaaactg ctatgatcag ggtaaaaatg taggcctttg ttttattgac tatgaaaaag      1740
     cattcgatag agtacaacat cataaactca tggaaattct caaaagaatt gatatagatg      1800
     agaaagatat ccgctgtata gagaatttat attggaatca gacagcacag gttaaatttg      1860
     ataatgaggt cacgacttgg tcaatatatg tagaggagtc cgacaaggat gcatactgtc      1920
     acccctgtta tttaacttat actctgagag tatttttcag gaggcacttg atgatgtaga      1980
     aaaaggcata aaggttaacg gagtgtatat caacaacatt cgctatgctg atgacacggt      2040
     attgattgct gataatttag atgatcttca acaacttgtc aacatagtag gagattacag      2100
     cagtactcta ggtctgaata ttaacatcaa aaagactaat tttatgattg tcacacgaga      2160
     gtccgactcc ttcaaagatg caaatctaca atttcaagga tctgtaatac aaagagtaag      2220
     caagtttaaa tacctcggaa cctggctttg tgaagactgg cgaacagaca tggagataaa      2280
     atgtcgcata gagaacgccc gaacgccttc ataaaattta agaaattctt acaagcacag      2340
     acctagacct aaaccttaga gtccgatttg taaaatgcta catctggtcc gtgcttctat      2400
     atggctctga aggatggaca ctaaatacga caacaacaag aagttagagg cctttgaaat      2460
     gtggatttat cgcagaatgc ttaaaatacc gtggactgca agaataacca acaccaaagt      2520
     actggaacga atgaacaagc agcgagaaat gttgacagtg tttaaaagaa gaaaaactgc      2580
     atacctagga catatattac ggaacaccaa atatatgctt ctgcagttaa taatagaagg      2640
     gaagattgag gaaaaagaag acaagggcga agaagaacat cctggttgga caatataaag      2700
     cagtggacag gactaagaag tgtagaccag ctgctacata ctgcggttca cagaacaaag      2760
     atgcatcatg tggtcgccaa catccattaa tggataagca gcagaagaag aaaa            2814
//
ID   RTE-27_PPo  repbase;    DNA;    INV; 205 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-27_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-205
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3181-3181 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 205 BP; 84 A; 19 C; 43 G; 59 T; 0 other;
     ggttggagaa gctaggatag gaaaaatgga agctttagag gaggcctatg tccagggaca        60
     agctgtagat agtggtttaa gagtcgccaa ttgtaagaaa aaatagatgt aggtaaaatg       120
     taaatttaaa attagactta caaaaaaaaa atcaaatgta caatcttcag caataaaggc       180
     tttattatta ttattattat tatta                                             205
//
ID   RTE-28_LMi  repbase;    DNA;    INV; 3368 BP.
XX
AC   .
XX
DT   08-APR-2014 (Rel. 20.01, Created)
DT   08-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3368
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 277-277 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(378..977,962..1312,1361..1714,1829..3106)
FT                 /product="RTE-28_LMi_1p"
FT                 /translation="TETLNRRNGSTQNSNKALQELQNVDQDPFNLGIPSLQ
FT                 RTPRKKSNEKCPAIWNGISGSNSISDSVEDFSSNSPRTATLKIKVQNKIYT
FT                 LINVHAPTNDKNTKDKEGTETFWEELDQLISNIPDTHIKILLGDFNGKIGK
FT                 ERKYRTVVGKWPAHKLTNRNGQRLIELCIDHGLILETTRFKRRPHKLMTWK
FT                 CPNVKMGSVKNGECQIDHVAMDKNYHKEIYNVKVLRGVDIDSDHYISKIKI
FT                 KLTPRKKNKPSKSTSGRKYDPSYLINNVLYSERSKTLPSDEMGTIIDKLKN
FT                 IAKEIAPVRRRKKHSWWNEECDKAIKSREEINIARRQTAKEIRRIKRDHQK
FT                 ETLNFIEESFKQQKTRDYYRTFRKYQSKYTPPTLMMKNKNGKLAHSNKDNA
FT                 NILADHFKELLNAEEPKEYLDFEPQPKKKNKSREDNTTRSQAHSRHLEFGK
FT                 NARRVEYSYNPPKHEKGDRSDPNNYRGISLLDVTYKILSRIIFTRIQEQLD
FT                 QELGEYQGGFRPGRSCPDQIISLKWIMKHQRVRNKKLVTTFVDFKKAYDSI
FT                 HHESLLKILAEFGLHRKLNLIGLTLKNTKSKVKFRGELSESFEIRTGLRQG
FT                 DGLSPLLFNCALEKVMREWNKKCQPNIKIGRNIKLNCLAFADDLALLANSV
FT                 EEAKHQIEELEKIAAKVGLQISFEKTEMMPSFKVETPAITLNYNKQIKIVN
FT                 KFKYLGEVITWNSNEKMSIENRTTKLRQAQRITWPTYKKKCLSMNAKLKHY
FT                 HSVIKPEATYASETLFKMNTKSTTDKLQKADRRILRTIINKKYQVEGQWRL
FT                 LPNECYQETESIIDTMRKRRVAFFCHISRLPETRLLKQLFTTFGKVRPRTT
FT                 GSKKFKMI"
XX
SQ   Sequence 3368 BP; 1342 A; 651 C; 654 G; 718 T; 3 other;
     ggcggatagg ggggtcctca ccagacttga gcgaaataaa atagctctcg cggccaaaca        60
     catccacaat gtcattctac catatttcat gtatcacttt tcagatcaca tctggaatcg       120
     taaatctgac taagtcagaa castgatcat tkatcagaca atcacccatc atggaaagtc       180
     tttaataaag aatccaccgt cttggataca cagatctggg tccaagaaag acaccactcg       240
     gatacagtgg ggtgtcactt agaagattgt ggtgagtcgg agcacctgca gcccaacaga       300
     cgaaagtcag caattgagaa ccgkaaaatt ctctttcttt gaacattaaa tataaattca       360
     gtaatgaaaa ctggtgaact gaaacactta acagacgtaa tggatcaaca caaaattcta       420
     ataaagccct tcaggaactt cagaacgtag atcaggaccc atttaatctg gggataccgt       480
     ctctacaaag gactcccagg aaaaagagta atgaaaagtg tcccgcaatt tggaatggga       540
     tttctggttc taatagcata tcagactcag tggaggactt ctcgtcgaac tccccaagaa       600
     cagcaacctt aaaaatcaaa gtacagaaca aaatatatac gctgattaat gtccatgccc       660
     caacaaatga caaaaacacg aaagataagg aaggaacgga aacattttgg gaagaactgg       720
     atcaactgat atcaaacatc cctgacaccc atattaaaat cttgcttgga gatttcaatg       780
     gaaaaattgg gaaagaaaga aaatatcgca cagttgttgg taaatggcca gctcataaac       840
     tgaccaacag gaatggtcaa agactaattg aactatgcat agatcatgga cttattctcg       900
     aaactacaag atttaagaga aggccgcaca agttaatgac ctggaaatgc cctaatgtta       960
     aaatggggag tgtcaaatag accatgtcgc aatggataaa aattaccaca aggaaatcta      1020
     taacgtcaaa gtccttcgtg gggtggacat cgattcagat cattacattt caaagataaa      1080
     aattaagtta accccaagaa agaaaaacaa accatcaaaa tccactagcg ggagaaaata      1140
     tgaccccagc tatttaatca acaatgtttt gtattcagaa cgatccaaaa cacttccaag      1200
     cgacgaaatg ggaacgatta ttgataaact gaaaaacatt gccaaggaga ttgcccctgt      1260
     cagaagaaga aagaaacatt cctggtggaa tgaggaatgt gataaagcaa tatagaaaag      1320
     gcaaaagcat ggccgaatga ccagcgaaaa aaaaacctga aaatctcgag aagaaataaa      1380
     cattgccaga agacaaacgg ccaaggaaat cagaagaatc aaaagagacc atcaaaaaga      1440
     aaccctaaac ttcatagagg aatcattcaa acaacagaaa acaagggact attacaggac      1500
     attcagaaaa tatcaatcaa agtatactcc acccacactc atgatgaaaa ataaaaatgg      1560
     aaaactagcg cacagtaata aagacaatgc caacattctt gctgatcact tcaaagaatt      1620
     actaaatgct gaggaaccaa aagaatacct agatttcgaa ccacaaccaa aaaaaaaaaa      1680
     caaatccaga gaagataaca ccaccagatc tcagtgaagt gatcaaagca attaggtggc      1740
     tcaagaacta caaagcagct ggggagaatc agctggtcgt agaactgtgg aagaatgcaa      1800
     ataatcaaac acttcagaac ctccataagc acatagtaga catctggaat tcggaaaaaa      1860
     tgccagaaga gtggaataca gctataatcc acccaaacac gaaaagggtg atagatctga      1920
     tccaaacaac tatcggggga tttcgctgct tgatgtcaca tataagatcc tgtctagaat      1980
     tattttcaca agaattcagg aacaactcga ccaagaactt ggagaatatc aaggaggatt      2040
     tcgccctgga agaagctgtc cagatcaaat tatcagcctt aagtggatca tgaaacatca      2100
     aagagtgaga aacaagaagt tggtcaccac ttttgtggac ttcaagaaag cgtatgacag      2160
     tatccatcat gagtcattac ttaaaatcct tgcggaattt ggattgcacc ggaaactcaa      2220
     tcttattgga ctcaccctta agaacactaa atcgaaagtt aaattcagag gggaattatc      2280
     tgaatcattt gaaatccgga ctggacttcg acagggggat ggtctctcac cactactatt      2340
     taactgtgca ctggagaaag tcatgcgaga gtggaataag aaatgccaac caaacatcaa      2400
     gattggcaga aatatcaaac taaattgtct ggcctttgcc gatgatctag cgctgctcgc      2460
     aaatagcgtg gaggaggcta aacaccaaat tgaagaactc gaaaaaatag cagcaaaagt      2520
     cggactacag atctcgtttg aaaagacaga aatgatgcca tccttcaagg ttgaaacacc      2580
     agccattaca ctgaattata acaaacaaat taaaattgta aataaattca aatatcttgg      2640
     agaggttata acttggaatt caaatgagaa aatgtcaata gaaaacagaa caactaaact      2700
     gagacaagca caacgcatca cctggccaac atacaagaag aaatgtctct cgatgaatgc      2760
     aaaactcaaa cactaccact ccgttattaa acctgaagca acctatgcta gtgaaacact      2820
     gttcaagatg aacaccaaat caacaacaga caaactacag aaagcagaca gaagaatcct      2880
     tagaacaata ataaacaaaa aataccaagt agagggacag tggcgactat tacctaacga      2940
     atgttaccag gaaactgagt caataattga cacaatgcgg aaaaggagag ttgctttttt      3000
     ctgccacatt tccagactac cagaaaccag gctactgaaa caactgttca ctacttttgg      3060
     aaaagtaaga ccaagaacaa ctggttcaaa gaagttcaag atgatttaga tgagttaggc      3120
     ttgacaatgc aacaaattga aggcagagaa gagaagaaga tcctgaaaca gtgacacgag      3180
     actgaaatta aagacattta cacgcaaaaa atacaccata acagatgaag agagggcagc      3240
     caggtcggaa aggatgaaga agttttggga gcagaagagg aaagccaaat ctacaactag      3300
     gattaagact taaatgtata tggattgatt aagtgctcca atgtgggcgt aaaatatgta      3360
     aataaata                                                               3368
//
ID   RTE-28_PPo  repbase;    DNA;    INV; 200 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-28_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-200
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3182-3182 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. 5'-truncated.
XX
SQ   Sequence 200 BP; 63 A; 36 C; 65 G; 36 T; 0 other;
     aatttggcac tgcagctttc ccttcccggt cgaagagtta ggggcagacc caaaacaagg        60
     tggaaagatg tggtgctaag agacatgtgc gagtgccaag tttcggatca ggatgtcgag       120
     atagagcgaa gtggaggaga ttgacaagga aagctgaccc cactaccata tgggatacag       180
     gctaggaaga gagagagaga                                                   200
//
ID   RTE-29_LMi  repbase;    DNA;    INV; 3205 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 20.01, Created)
DT   09-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3205
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 278-278 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(498..692,668..1087,1136..1690,1703..3172)
FT                 /product="RTE-29_LMi_1p"
FT                 /translation="MVLNLVKEFKSINNRISYITFGGQSIDVTFLNAHAPC
FT                 EDKDEQVKEEFYSQLNLTCDSCQTIISKLMPNHNIKIVLGDFNAKVGRETI
FT                 HRPVIGNASLHEKSNDNGNHLITFATDHNLCISSTMFPHKNIHKGTWISPD
FT                 GQTVNQIDHVCIQKRFANSIKDTRSYRGADCDTDHFLVIAKMIVKFKKVTN
FT                 TKTKSVIYNVNMLKKNMEKMESGHNDINEDWTKIQTTLNEVASKVLGKRKT
FT                 PNWVWFNQICKRKIEERRRARKEWLENMNNTQLKENFTRIRKETSTVLRQE
FT                 KRKYYNDILDEAEDDLTHHRTRQMYQNIKKCTKKYVKKEQFIKDQQGRILV
FT                 NEKIGQRWAEYFSQLLNCEDPTELLPFEFPQTVDKKWLLRRNTKSHKKTEL
FT                 PGRPNCCRAHKNGGPDLVRTMTSLIKKVWEQETSRRLENGHHLPIAEKEQP
FT                 LVCDNYRGISLLDVSYKVLSLCLLNKILPLAEDVGDYQCGFRRNRSTVDHL
FT                 FTLRQTTEKCWEYNTDMHMLFIDFKKAYDSIHRGTIIKVLKEFQFPSKIIR
FT                 LVAMCLEQTLCKVRTSTGLSEQFEVRTGLRQGDALSPILFNLVLEKVDREF
FT                 MKTGPIGIPLDNTSVTRLAYADDVILISGSREELRRMASSYCQIASKAGLQ
FT                 VSEDKTQYMVLSKSASDGDPLTVDNLRFKRASTFKYLGSLFSDQNLCEIEI
FT                 NARIVGGNRAYFSLQDVLKKRSLTRSFKTRLYQSMIMPVVMYGCESLTLRR
FT                 TDEQKLLVFERKILRKIYGPVIDPQTGEWRIRKNQELKELYAQPDIIKRMK
FT                 RRRLTWAGHVARMSEGRIPHDVLLGTVAGRRYRGRPRTRWKDNVDRDTEDM
FT                 RLGAGDWLQEARNRERWRRSVEQAYGH"
XX
SQ   Sequence 3205 BP; 1158 A; 613 C; 747 G; 686 T; 1 other;
     gtgtgggttg ctagtccccc atcggcgcct ccccgggtgg cggaggggaa cgccaccaga        60
     tatggcggga ccggggaaat aaaatacccg gggtggacca aaactagcgt ggtagggcaa       120
     gtcactgagc atagagaagc agtgtcccta ggtagacccc aaaacaaggt ctctggtctc       180
     caggttgggg tttgcagagg ctacctccct ctcacggaaa acaagttctg gtcaggatac       240
     tctacacatg cctcggaacc aggagtgtct taattggaac agaacttgta aataaaaccg       300
     gacttgattt ggaacatgga atgtaagaag tttttcaggc caggaagcat gcaaactcta       360
     gtcaaccaac tagaaaaaat gtagcactac aagaaatcag atggccggca caggatctgt       420
     agaacagtac aggaagtatt cttcatggag actgtggtga ccatcgagaa tttggaacag       480
     gtttttatgt taataacatg gtgctaaact tggtaaagga attcaagtcc ataaataata       540
     gaatctcata cataacattt ggtggacaaa gcatagacgt gacctttctt aatgcacatg       600
     ccccttgtga agacaaagat gaacaagtga aagaggaatt ctatagtcaa ctgaatctca       660
     catgtgactc atgccaaacc ataatatcaa aatagtgctt ggtgacttca atgctaaggt       720
     aggaagagag acaattcaca ggcctgtcat tggaaatgcc agtttacatg aaaaaagtaa       780
     tgacaatggt aaccatttga ttacattcgc tacagatcat aacctatgca tatctagcac       840
     catgttcccc cacaaaaaca tacataaggg gacatggata tcacctgatg gccaaactgt       900
     gaaccaaata gatcatgtat gtatccaaaa acgctttgca aatagcatca aggacaccag       960
     gtcatacaga ggagcagact gtgatactga tcatttccta gtaatagcca aaatgatagt      1020
     aaaatttaag aaagtcacaa atacaaagac caagagtgta atttataatg taaacatgtt      1080
     aaaaaaatga cagagagaaa ggaacaattc gtggcagaac tagccgggaw gataaaatat      1140
     ggagaaaatg gagtctggtc ataatgacat aaatgaagat tggacaaaaa tccaaaccac      1200
     cctgaatgaa gtagcctcaa aagttttggg aaaacggaaa acacctaact gggtatggtt      1260
     caaccagata tgcaaaagga aaattgagga aagaaggaga gccagaaagg agtggttaga      1320
     aaatatgaat aatacacaac taaaagagaa ctttactcga ataaggaaag aaacatcaac      1380
     agttcttagg caggaaaaaa ggaaatatta caatgacata cttgacgagg cagaggatga      1440
     tctgactcac cacaggacta gacaaatgta tcaaaacata aagaaatgta ccaaaaagta      1500
     tgtaaagaaa gaacagttta ttaaagatca acagggaaga atactagtaa atgaaaaaat      1560
     agggcaaaga tgggcagaat acttctccca gctcctgaat tgcgaagacc ccacagaact      1620
     tctgcctttt gagttcccac aaactgtgga caagaagtgg ctactccgac ggaatacgaa      1680
     atcacacaaa taatcaaatt gaaaaacaga gctgccagga agaccaaatt gttgcagagc      1740
     tcataaaaat ggaggaccag accttgtaag aaccatgaca agcctcataa agaaggtctg      1800
     ggagcaagaa acttccagaa gattggaaaa tggccatcat ctgcccattg ctgaaaaaga      1860
     acaacccctg gtatgtgaca attatagggg aatatctcta ctagatgtca gctataaagt      1920
     actatcacta tgcctcctaa ataagatact accacttgct gaagacgtag gagactacca      1980
     atgtggcttt agacgcaata gatcaacagt ggaccacctg tttaccctac gacaaacaac      2040
     ggagaaatgc tgggagtata atactgacat gcacatgctc tttatcgact ttaaaaaagc      2100
     ctacgacagc atacacaggg gtactataat caaagtacta aaagaattcc agtttccatc      2160
     taaaataatc cgcttggtag caatgtgtct agaacagaca ctctgtaaag tgcggacaag      2220
     tactggtcta tcagaacagt ttgaagttcg aactggcctc agacagggag atgcactctc      2280
     ccctatatta ttcaaccttg tgctagaaaa agtagaccgg gaatttatga aaactggccc      2340
     cattggaata cccttagaca acacgtcagt gactcgactg gcttatgcgg atgatgtaat      2400
     cctaatcagc ggcagtaggg aagagctgag aagaatggca agctcgtact gccagattgc      2460
     cagtaaagca ggcttgcaag tcagtgaaga caagacgcaa tacatggtcc taagcaagtc      2520
     ggctagtgat ggggacccgc tcacggtgga caatctccga ttcaaaaggg cgagtacttt      2580
     caaatatctt ggtagcctct ttagtgatca gaacctctgt gaaattgaaa taaatgcaag      2640
     aattgttgga ggcaatagag catactttag ccttcaggac gtgctaaaga aaaggtccct      2700
     gacaagaagt ttcaagacca ggttgtatca aagtatgatt atgccagtgg ttatgtacgg      2760
     ttgtgaaagc ctcaccctca gaagaacaga tgaacagaaa ctactggttt tcgaacgaaa      2820
     aatcctccga aaaatctatg gtcctgtgat agatccacaa acaggagaat ggagaattcg      2880
     aaaaaaccaa gaattaaaag agctttacgc acagccggac attataaaaa gaatgaagag      2940
     aagaaggttg acctgggctg gacatgtagc aaggatgagc gaagggagga taccccatga      3000
     tgtgttgctg ggaacggtag ctggaaggag ataccgggga cgaccacgga caagatggaa      3060
     agacaatgtt gacagagaca ccgaggacat gagactagga gcaggtgatt ggttgcaaga      3120
     ggctcgcaac cgggagcgat ggaggaggag tgtagagcag gcatatggtc actaaggccc      3180
     aagccacgga taagtaaagt aagta                                            3205
//
ID   RTE-29_PPo  repbase;    DNA;    INV; 1601 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-29_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1601
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3183-3183 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~80% identical to consensus. 5'-truncated.
XX
SQ   Sequence 1601 BP; 518 A; 271 C; 409 G; 359 T; 44 other;
     catcasaaca atggtaasaa tattawgaaa wcaaagwwak gwaaaaaskt tgacctgttw        60
     ctsttcagaa acaaccaatg ttgtcggckc tgcagccgaa gaaagaaata tgaaaaagtg       120
     ggaaaaawaa cagttaaatg aggcaakaaa gaggaaawtg tatagaagaa aaatacgccm       180
     gtctggggaw aaakaggcga ggaagacatt gttcsatttt aactccgatt ttagaacaga       240
     agactggaaa tcttcatgtg gaaatattgt aacagcaacg ataaactcgc ttaaaattcg       300
     atatttttta amtactttga taaacatttt ttcatgttcg ataaaagtcg tatcataaga       360
     attaatctta aattaataaw tcaacattca aagcgtggaa aaacgtgaac gagataaata       420
     acgataatga atcgaggaaa attgctagaa gagcagttgc ggtggcaaac gctgcagtac       480
     aaaacaaatt ataccaggaa ttagacaccg caaggacaaa aagatcttta cagactagca       540
     aaacgagaga gaagaatgca agagaaatta ctgcacgtaa aatgatgaag atataagaga       600
     gcgatggaaa gtatatttcg aaaacctaat gaatgattgg aacggtgtcg taccgagaac       660
     accggtcaat atggcgatgg tgaatgagat cagtgtggat gaggttaaga tagcagtgcg       720
     aggtatgaag aatggaaagg ccgtggggcc ggatggaata cccgtgaagt atggaagstk       780
     ctaaagtaag atggattaat gtggctgatt tattcttcga aagttgttgc aggagagtaa       840
     tccctgatgg tgcactagta cgctggtacc cattttataa gaacaaaggt gatgttacag       900
     gattgcaaca actatcgagg aataaagctc atgtcacata ctatgaaagc ttgggagaag       960
     gtgatagacg gaagaataag agaagagagt gaggtatcac agaaccaatt cgggtttacg      1020
     ccaggtcggg ggacaacgga cgccatattt gcgttacgcc agctttgtga aaagtacagg      1080
     cgtgtgcata agaacttgca tatggtgttc gttgacctcg aaaaggcgta cgaccgagtc      1140
     ccccgtaagg ttctgtggtg ggcgacgaaa gaaagacaag tgcctgggaa atacgtacga      1200
     ctcgtgagtg ctatgtatga aagcgcgaac actcacgtca ggtccgaagc cggcgtaacc      1260
     gacaagttca gtgtggctgt gggtctgcac cagggatcgg ctttaagccc ttatctgttc      1320
     ctcctggtta tcgatgcctt aacatcggcg atccaggagg aagcaccctg gtcaatgctg      1380
     ttcgccgacg gcattgtcct tattgggaaa gatgggcttg aggtgcagag tagawtggag      1440
     ggatgkcggg wtaaactggg ggmagccsga cwkaagatma gcaggwcsag aacagagcag      1500
     ttattctgcg acttcggmgg cttwcgcggk tttmtkccaa tcgccttaaa tgctgkgccc      1560
     ctasttwgct ccgactttmg gtacctcggc tcwctagtcc a                          1601
//
ID   RTE-2B_PPo  repbase;    DNA;    INV; 1519 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1519
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3152-3152 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 1519 BP; 490 A; 317 C; 330 G; 374 T; 8 other;
     gacactaaat tggctatact acaactaaaa aacaataaag cacctggcat tgataacatt        60
     caaggcgaac tcctaaagta tgcgggaccc tgttttgaaa aggaatttca taaaatggtg       120
     ttgcaaatct tgacacatga agcaatgccc gaagactggt acctatctgt cttttgcccc       180
     ctacataaaa aaggtgacat tttagaatat agcaattaca gggggataac cctccttaac       240
     agctcgtata agatctttgc cagaatactt tttaataagt taaaggactt catagaacca       300
     gttttaggcg agtaccagtg gggattccga ccaaattgat tcaccatcga ccagatcttc       360
     tgccttaggc agattctaga aaaaacatac gagttcaatg tggacactca tcatcttttt       420
     attgatttca aggctgcgta tgacaacgtc cacagaattt acttatacca ggctatggca       480
     gatattggga taccaacaaa acttgtacgt ctaacagaga tgacccttag gcatacacgg       540
     agcgttgtta ggatacagtc ggacctatca caaccattta gcacctatga tggcctcacg       600
     cactatsatg cctactcttt aacgttgctc ttgaaaaatg cattcgcgat tcaaagatcg       660
     agaccagcgg taacatattt tttaaatcgg cgcaaatttt gggatacgca gatgacmtag       720
     atgtgatcgg caggaacatg tctgagatag agagtgcgta ccttgcccta gaaacatctg       780
     cggaggccgg cctggaagtc aacaaggaca agacaaagta tcttagacat amcaagcaac       840
     aatcaccaac agcccaacca gtatctgtaa amattggcag tagcaccttt gtcagtgtcg       900
     aaaattttgt atacctggga acactcataa caaataacaa tgacatgtct ttggagatta       960
     acaggagaat tacggctgcc aataaatgtt cctatagcct gtcacgatat tttagctcga      1020
     aaatactatc cagaagcact aaaattctcc wttatwagac acttcttaga ccaacattga      1080
     cgtatgcctm agaatgttgg gttttgacaa agaaagacga agaacgattg wtggtgtttg      1140
     agcgtaggat actgcggcga tttatggagc tctgtttgta aataatcaat ggcgaactcg      1200
     atacaatcac gaactttacc aaatctttaa tgagccaaat gtcgtcaagg ccatcaaaat      1260
     tggtcggcta cgctgggcag gacatgtagc gaggatgagt gactgcagag tgcccaagcg      1320
     cctattagag agtcaaccag agggacgtag atcacgcggg aggccgaaac taagatggca      1380
     agatgatgtc gaacgagacc ttaaaaatgt cggcattaag ggctggaaac aaaaagccca      1440
     agatagaccg atatggagga atttactgga ccaggcccag gcccacccgc ggctgtagtg      1500
     cctctgatga tgatgatga                                                   1519
//
ID   RTE-2_AG    repbase;    DNA;    INV; 3402 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   21-JAN-2014 (Rel. 19.01, Last updated, Version 2)
XX
DE   RTE-like non-LTR retrotransposon - a consensus sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_AG;
KW   Ag-JAMMIN-1.
XX
NM   RTE-2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-3402
RA   Jurka J.;
RT   "RTE-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 647-647 (2009).
XX
RN   [2]
RP   1-3402
RA   Biedler J. and Tu Z.;
RT   "Non-LTR Retrotransposons in the African Malaria Mosquito,
RT   Anopheles gambiae: Unprecedented Diversity and Evidence of Recent
RT   Activity.";
RL   Molecular Biology and Evolution 20(11), 1811-1825 (2003).
XX
RN   [3]
RP   1-3402
RA   Webb C.H., Riccitelli N.J., Ruminski D.J. and Luptak A.;
RT   "Widespread occurrence of self-cleaving ribozymes.";
RL   Science 326(5955), 953-953 (2009).
XX
RN   [4]
RP   1-3402
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (21-JAN-2014).
XX
DR   [4] (Consensus)
XX
CC   This is the same element as Ag-JAMMIN-1 in [2].
CC   [4] Consensus update and 5' extension. The consensus now includes
CC   a drz-Agam-2-2 ribozyme [3] at the 5' terminus (1-210).
XX
FH   Key           Location/Qualifiers
FT   CDS           303..3374
FT                 /product="RTE-2_AG_1p"
FT                 /translation="MRRPYDETGGWGRGLASHPWKNINATKGNQRISNRTN
FT                 RYRPTQPNKANDWKLGTWNCRSLTAPGSTRILSDEVRARGFGIVALQETRW
FT                 KGVTERPYRSDCTIYQSGGEKHELGTAFLVIGEMRKRVIGWWPINERMCRL
FT                 RIRGRFFNLSIINVHSPHLGSTDDDKDNYYTQLEREYDRCPQHDVKIVIGD
FT                 FNAQVGREEAFKPTIGSFSAHRLTNDNGLRLVNFASSKHMNIRSTFFQHAP
FT                 RFSYTWRSPQQTLSQIDHVLIDGRHFSDIIDVRTYRGANVDSDHFLVMVKL
FT                 RQKLCVANKLRYQPTPRLNTDRLKQAVVARDFAIALGEALPEDTTTEAMSL
FT                 NDHWRMVEQAISSTAERTIGRVTHNQRKEWFDDECRRALSEKNAARTRMLQ
FT                 RETRQNVEDYRRLRRQQTLLFQDKRRGFEESDEQLMQQLSQSGETRKFYRM
FT                 LNAARSGFTPMTAICRSEEGDILSDEREVIDRWKCYFDRHLNGADTRADAG
FT                 SRGEQPYDSQHDNDEVPPPSLDEVISAIKQLKCNKSAGSDGLVAELFKMGP
FT                 ERLAVIMHRLIVRIWDQEELPDEWKLGVIHPVYKKGDRLDCANFRAITVLN
FT                 AAYKILSRILFCRLSPLATDFVGSYQAGFVGGKSTTDQIFTLRQILQKCRE
FT                 HQIPTHHLFIDFKAAYDTIDRTELWNTMQQHGFPGKLVRLLRATMDGVQCK
FT                 VRVTNMLSEAFESHRGLRQGDGLSCLLFNIALEGVMRSAGFDIRGTIFTRT
FT                 LQFLGFADDIDIIGRTSAAVCEAYTRLKREAARIGLRINATKTKYLLAGGS
FT                 DRDRARLGSRVSVDGDDLEVVEEFCYLGTIVTSDNNVSSEIRRRIVQGNRA
FT                 YYGLHKLLRSRRLQQHTKCAIYRTLIRPVVLYGYESWTLLTEDANALAIFE
FT                 RRVLRTIFGGVCEHGVWRRRMNHELAELFGGADILTVIKAGRIRWLGHVMR
FT                 MPDSCPTRKVLVSDPFGTRRRGAQRARWLDQVESHLSEIGCNRGWRTAAQD
FT                 RVSWKRIGDLAMSTRRAH"
XX
SQ   Sequence 3402 BP; 874 A; 884 C; 991 G; 653 T; 0 other;
     gttctgttgt cagtgtttgt agcaataccg cactgatacg ggtatggtct gacgcctctc        60
     gaaggctaat ataggatctc cataccctac tccgactcaa tacgtccacg gcgtacagaa       120
     cggtaacata tttctccaaa tatctgagct tgggtatacg gggaaaccca accccttggg       180
     aagatgggct atatggctaa attgagcggg gggggggggg atgaccagcg tctgttctcc       240
     atgttagggg cggctggttg ccccttctgt cctggcatcc tacgggactt taatcagcta       300
     ggatgcgtag gccctacgac gagactggag gttgggggag aggccttgca agccacccct       360
     ggaaaaacat aaacgcaacg aaaggaaacc aaaggatttc gaaccggacc aaccgatacc       420
     gacccacgca accgaacaag gcaaacgatt ggaaactcgg aacatggaac tgcagatctc       480
     tcacagcacc cggaagtacc cgcattcttt cggacgaggt gagggcccgt ggcttcggaa       540
     tagtagcact tcaggagacg cgctggaaag gagtgacgga gcgcccctat cgtagcgatt       600
     gcacgatcta ccaaagcggt ggtgaaaagc atgaactcgg tacggcgttc ctggtcatag       660
     gtgagatgcg aaagcgagtg atcgggtggt ggccgatcaa tgaacggatg tgcaggttga       720
     ggattcgtgg caggttcttc aacctgagca tcataaatgt gcatagtccg caccttggaa       780
     gcaccgatga cgataaagac aattattata cgcagttgga gagggagtac gaccgctgtc       840
     cacaacacga cgttaaaatt gtcatcgggg attttaatgc tcaggtcgga cgggaggagg       900
     catttaaacc gacgatagga agtttcagtg cccaccggct gaccaacgac aacgggcttc       960
     ggctcgtaaa cttcgcctcc tccaagcaca tgaacattcg cagcaccttc ttccagcacg      1020
     cacctcgctt cagttacacc tggagatcac cgcagcaaac actttcccag atcgaccacg      1080
     ttctcatcga tggaaggcac ttctcggaca taatcgacgt aaggacctat agaggagcaa      1140
     acgtcgactc agaccatttc ttggttatgg ttaagttacg ccagaaactg tgcgtggcca      1200
     acaaactgcg ctatcagccc accccaaggc tcaacacaga ccggctgaaa caagctgttg      1260
     tggcgaggga cttcgcaatc gcgcttgggg aagcgctgcc ggaggacacc actaccgagg      1320
     cgatgtctct caatgaccac tggcgcatgg tggagcaagc catcagcagc acggccgagc      1380
     gaacaattgg ccgcgtgacc cataaccaga ggaaggaatg gtttgatgat gagtgcaggc      1440
     gagcactctc cgagaagaac gccgcgcgga cccgcatgct ccagcgcgag acccggcaga      1500
     acgtggaaga ctacagacga ctgagaaggc agcagaccct actcttccag gacaagaggc      1560
     gcggcttcga agagtcggac gagcaactca tgcagcagct atcccagtcg ggggaaactc      1620
     gtaagttcta caggatgctg aatgcggcac ggagcggttt tactcccatg accgctatat      1680
     gccgcagtga ggagggagat atcctgtcgg acgagcgaga ggtgatcgac agatggaagt      1740
     gctacttcga cagacacctg aacggagcag ataccagagc agacgcagga agcagaggag      1800
     agcaacccta cgacagccag catgacaatg acgaagtgcc cccgccatct ttggacgaag      1860
     tcatcagcgc catcaaacag ctgaaatgta acaagtcagc tggcagcgat ggtctggtgg      1920
     ccgaactgtt caagatgggt ccggagaggc ttgccgtcat catgcatcgg ctgattgtta      1980
     ggatttggga tcaggaagaa ctaccggacg agtggaaact gggtgtcata cacccagtgt      2040
     acaaaaaggg cgacaggctg gactgtgcta acttccgggc catcacagtc ctgaatgctg      2100
     cctacaagat cctgtcccga atactcttct gcagactttc gcctcttgct acagatttcg      2160
     tcggcagcta tcaagctgga tttgttggag gcaaatcaac taccgaccaa atctttactc      2220
     tacggcagat cctccagaaa tgccgagagc accagatccc tacgcaccac ctgttcatcg      2280
     acttcaaggc ggcctacgat accatagatc ggaccgaact atggaacacc atgcagcagc      2340
     acggattccc tgggaagctg gtacgactgt tgcgggccac tatggacggg gtgcagtgca      2400
     aggtgagagt gacgaacatg ctgtcagaag cgttcgaatc tcaccggggt ctgaggcaag      2460
     gggatggact ctcctgtttg ctgttcaaca tcgctctgga aggtgtcatg cgaagcgcgg      2520
     gcttcgacat ccggggcacg attttcaccc gaactctcca attccttggc ttcgcggatg      2580
     acatcgacat catcgggcga acatctgcgg cggtgtgcga ggcgtacacc cgactgaaac      2640
     gcgaagccgc taggattgga ttgaggatca atgcgacgaa gacaaagtac ctgcttgccg      2700
     ggggctctga ccgtgataga gcccgactcg gaagcagagt atcagttgac ggcgacgatc      2760
     tcgaggtggt agaggagttc tgctaccttg gcacgatcgt aacttcggac aacaacgtaa      2820
     gcagcgaaat ccgaaggcgc attgttcagg gaaatcgtgc ctactacggg ctccacaaac      2880
     tcctgcgatc cagaagactc cagcaacaca cgaaatgcgc gatatatcgc acactgatac      2940
     gtccggtggt cctctacggg tacgagtcct ggactttact gacggaggac gccaatgcac      3000
     tcgccatttt cgaacggcgg gtgctaagga ctatctttgg cggtgtgtgc gagcacggcg      3060
     tgtggagaag gaggatgaac cacgagctag ctgagctgtt tggcggtgca gacatcctga      3120
     cggtcatcaa agccggaagg atacgctggc tggggcacgt gatgaggatg ccggactcat      3180
     gccccaccag gaaggtgctc gtcagcgacc cgttcggcac gaggcgtaga ggagcacagc      3240
     gagctcgctg gctggatcag gtggagtcgc acctgtcgga aatcggatgc aaccgtggtt      3300
     ggaggactgc agcccaggac cgagtttcct ggaaacgaat tggcgacctg gccatgtcta      3360
     cgagacgtgc tcattgagca ggccaagaag aagaagaaga ag                         3402
//
ID   RTE-2_BM    repbase;    DNA;    INV; 3238 BP.
XX
AC   .
XX
DT   29-APR-2010 (Rel. 15.07, Created)
DT   29-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3238
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1054-1054 (2010).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus. The ORF is interrupted by mutations.
XX
SQ   Sequence 3238 BP; 1304 A; 628 C; 574 G; 730 T; 2 other;
     ggtaacgaga cctcacaaac aaacaagaag aacaagactc aaaagcccgg tacccccgcg        60
     ataagatcca acagcatctc cgagggagtt gttaaaccgg gcatgctaaa cttcttggtg       120
     aataaaaaca ccataacggc tagtaatcat aatccaggaa aatcaacata gcaattgcca       180
     ccctcctcca attcaaattc aaatttagta cttaagaaca atcaaactaa acatcttcca       240
     aaacggctgg tcaccgagga agattacgac tacaaccctc caagtgtaaa cattaacaga       300
     cagcttataa gtaaaacaaa taaagataat gaacaaaaac tttatataat aactttcaac       360
     gtgaaaacac tatcttctta tgaaaaacta atagaattaa cagaatcact aaaatcaata       420
     aaatcagaca ttattggaat ggcagaagtg agacgtcttg gggaaaaaat agaggaatat       480
     gaggatttta ttctttacta cacgggccag acacctggac agttcggcgt gggctttttg       540
     gtgagaaaaa atcttaaagt aaacatagag aacttcacgg gcttatcaga acgagtcgct       600
     atattaaact tacaattcca tgggcaaaaa ctatcaatca ttcaagtcta cgcacccaca       660
     gaagcagcaa atgaagaaga tatttcttat ttttatgaga cagtcagaag ggctagggag       720
     ttagcgcata aagactatat cataatgggc gacttcaacg ctaagatagg taaaccaaga       780
     cacgaagaat tcttgattac aaaaccattt ggtcttggta taagaaatga cagaggccaa       840
     aaattgatag atttcgctct agaaactaag acggcaataa tgaacacata ctatcataag       900
     aaaccaaacc gcagatggac atggcgctca ccaggcggcg catataaaaa tgagatcgat       960
     tacattctat ctaacatacc gcagaagttt cataatgtgg aagttctaaa tatcaactac      1020
     ccatcagacc acaggccagt gagagcaacc atatctcttg aaaaaataaa aatatccagg      1080
     actagataca agaccaacca gtgtgcgagt ctaaaatacg aaagcgaaat actcagattc      1140
     agattaaatc tccaactcca cctgctacgt gccgatgacc agaacttgaa agatactgat      1200
     aatatacaga ctcaatacaa caaaataacc aatgccatct cgagaagcct agaagaaacg      1260
     cacaaggaac acaattcgta cagacacaaa aaaatatcgc tacgcacaga aaaactcatg      1320
     actagaagga aagaattaca gaagactaaa aacaaaacca gaagtataag aaacgaaata      1380
     tcagctttat acaaactcat tagcaagtat atcaggcaag attatgcaaa atacagacag      1440
     gataccataa ctaagcactt acaagtttca ggcagcacga aaaaggctta taaagagcta      1500
     gcacaaaata aaacttggat cgaaggactt aaatcatcag gaaaacaatc tataataaca      1560
     aaccgcaatg atatcattaa tatggccact gaattttata aatcattata cagtaaaaaa      1620
     acatccacat atgtagacat aacaccaagc agtaatatat caaacaacga aaacgtgcaa      1680
     ccaatcacgg aatctgaact tattacagca ataaaaaacc tgaaaaccga caaaagccca      1740
     ggcccagatg gcattncaaa cgaagctcta aaggcagctg acactctatt caactctcat      1800
     tcttgaacct ggtgacaccc ccccaatggt cagagtcaaa tataatctta cttataaaaa      1860
     aggagaccca atgacatggg aactacagac cgataagcct accctcgact gtacaaactt      1920
     ttttctccat aatataacga agaataagta gtgcactaga gaaaggcaac ccgtgaacag      1980
     gcgggcttca gaaaaggatt ttcaacacgt tgaccacatc acacgctaga gctcctgata      2040
     gaaataccaa gaaaaacaga gaacactata cattgcatac atagactacc aaaaggcntt      2100
     cgacaccgtg tcacacgata gcgtatggaa gtctttaaaa aaccaagggg tgaatgataa      2160
     atatatacag ataattaaaa acatttataa aactaataca agtagaataa aactagaatc      2220
     tataggccca agattttcta tcaaaagagg tgtaagacag ggagacccca tgtctccaaa      2280
     aattttcatt gccatacttg aatcaatatt tagacagcta gattggaaaa acctcggctt      2340
     aaatattgaa ggtaaatatt tgactcatct ccgctttgca gacgacttag tagtgctggc      2400
     agaatcaagt tcagaacttc aatacatggt tgagtctctc cacagagcca gcattaaagt      2460
     aggcttagaa atgaatacaa caaaaactat ggtaatgaca aatagtgcta gaaagaaaat      2520
     aacagtcgga aacgaactat tgaaatacac agaccactat atttacttag gaaaacagat      2580
     cagctttgaa agaaaaagca atgagatgga gattggaaga agaatccaac acacctggaa      2640
     caagtactgg aatttacgtg aagtatttaa aagtacgttg ccaatatact taaaaaccaa      2700
     ggttctaaat tcctgcattc taccatgctt gacttatggc tgccaaactt ggaagtttac      2760
     atcaaaggcc aataatctaa tagtaagctg ccaacgagga atggagcgaa gtctgctgaa      2820
     tataagaaag attcaaaaaa tcagacacac aaaaatcaga gaaaaaacaa aatctataga      2880
     tgctcttgaa tatgccagaa acttgaagtg gaagtgggct ggtcatgtag ccagacttaa      2940
     ggaccagaga tggactgcaa gaataactgc atgggaaggg ccacaaggga aaagaaaaaa      3000
     gggtcgcccg atatcaaaat gggaggatga tataaaagct atcgctggcc ctcgatggat      3060
     acaggtagcc caaaatagaa ccaaatggaa ggacttggag gaggccttca ccatgtttaa      3120
     tgggttcctg ccaaacataa gtgaagaaaa ttaaaattat tatatgtata cctatttact      3180
     ttgtatttta gcaggaaata aaaggctttt tattttattt tattttattt atttatta        3238
//
ID   RTE-2_BTa   repbase;    DNA;    INV; 3176 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3176
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 952-952 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           201..3152
FT                 /product="RTE-2_BTa_1p"
FT                 /translation="MYNVKKPNNICLGNHGNKRTLRLRLRKTTLAFGTWNV
FT                 QGISKKLTEVVSEIKNNGIDVAVITETKKKGHGSESLGDYDLFYSGVPKHQ
FT                 RAQQGVAILIRKKFRKNIKNWEAINARMIKMNLTMHGHRVTVLGVYGVNDD
FT                 ATIALKDQFFEELDEEVVKVGPGREVLVLGDLNGRTGSRVNSKIVGPFGEV
FT                 TVNDNGSRIIDVCEQRELKVLNGFYQHKDIHKYTWVQPTRGLRSIIDYVLV
FT                 KQVTNLKIQQVRVCRGLSCGSDHYFLRADVAFPARVSQNDQGDNQQPERQR
FT                 VHQVQYNIDSLKHPSVKALYAKRLDEKLGDACDGSTEERYEFIKNCVHSAA
FT                 AEALGVSDQKNDNRKPYWWDAEVEEEINVKRNRYHQFLSSQKLDDKIMYRQ
FT                 AQARVRRVITRKKNEAWEESCMKINTYLGGRKSTEGWKVIKGLRRNKMRDI
FT                 ISPIPIDKMEDYFKDLLTERRPEFQGGVISTKEDSNVEIQLQDVVKAVREL
FT                 KTRRAPGPGGIPAELIKCGTGKLFEHLRKLMQDCLHGSEIPKDWKESWITP
FT                 SHKKGSKQDCDNYRGISVTGTLSKVYGKILKAKVEEVWSGQEAEEQAGFRA
FT                 GRSTVDHLFTITQVIEKKRAVSQELHLVFVDLQKAYDSVPLVKLWEALEKR
FT                 GFSKGLVGAIKSFYNGTIARIKCRGELSGGFFVTKGLKQGCCLSPTLFKVY
FT                 LEHVLKEWKNKVAGMGVPLLDGQTLYTLCFADDQIVVAQDEEDADYMTRKL
FT                 VEEYRKWGMDVSVSKTEKLVVGAAHQRQSIELEDGRRIEECDEYKYLGVWL
FT                 DQDGRMDRAIKDRIIQGRRAIAMLNGVLWDQSISKANKHRIYDAIVKSIVL
FT                 YGSEVWPLTKRTQEMLRATEMDFWRRSAGISRRDRVRNERIRQVMKVEKDI
FT                 VHDVMSRQLCWYGHVQRMSEERLPKQVLDWVPPGKRRRGRPVKGWRQGVDE
FT                 EMLRCQLPDNLWEDRHMWRLGVVERQSAL"
XX
SQ   Sequence 3176 BP; 946 A; 607 C; 928 G; 695 T; 0 other;
     ccgtatgggg gactgtactg tcacaggttt agcaatcctg cggaccccag ctggtagccc        60
     ctgcctcaaa gggggtgggt agacagggct cttagctgtg gtggaagcaa cctgtctagg       120
     agaggtaact ccgaaatcaa accctggtcc tccaggttgg gggttggggc atcgggctga       180
     ctccccgatc ctcggaaaaa atgtacaatg tcaaaaaacc caataacata tgcctcggta       240
     accatggaaa caaacggact cttcgactta gattacggaa aacgacactc gcttttggta       300
     cttggaatgt gcaaggcatt tccaagaaac tgacggaagt ggtatcggag ataaagaaca       360
     acgggatcga cgtggcggta ataacggaaa cgaagaaaaa aggccacgga tcagagagcc       420
     ttggggacta tgatttattc tacagtggag tgccgaaaca tcagcgtgca caacagggtg       480
     tcgcaattct gatccgcaaa aaatttcgaa aaaatattaa gaactgggag gccatcaacg       540
     ctcgcatgat taagatgaac ctaactatgc acggtcacag agtcactgtt ttgggggtat       600
     acggggtcaa tgatgatgct accatcgcac ttaaggatca gttttttgaa gaactggacg       660
     aggaggtagt gaaggtagga cctgggagag aagtccttgt gttgggagat ctaaatggaa       720
     gaacgggatc ccgggtgaac agtaaaatcg tcggcccgtt cggtgaagtt acggtgaacg       780
     acaacggaag ccgcattatc gacgtttgcg agcagaggga attaaaagta ttgaacgggt       840
     tctaccaaca caaggatatt cacaaatata cttgggtcca acctacccgc ggcttaagat       900
     ccatcattga ctacgtgctc gttaaacagg taacaaacct gaagatccag caggtgagag       960
     tatgtagagg actctcctgc ggtagtgacc actatttcct cagagcggat gtagcctttc      1020
     ccgctcgtgt gtcgcagaac gatcaaggcg acaatcaaca accggagcga caacgcgtac      1080
     atcaagttca gtataacatc gatagcctaa agcacccgag tgtcaaggct ctgtacgcaa      1140
     agcgcctgga tgaaaagtta ggagatgcgt gcgatggcag tacggaagag cggtatgagt      1200
     ttatcaagaa ttgcgttcac tcggcggcag cggaggccct gggggtttct gatcaaaaaa      1260
     atgataacag aaaaccgtac tggtgggatg cggaggtaga ggaggaaata aatgtgaaaa      1320
     ggaataggta tcatcagttt ctctcttccc aaaagttgga tgataaaatc atgtacagac      1380
     aggctcaagc aagggtccgt cgggtaatca ctcggaagaa gaatgaggct tgggaagaaa      1440
     gctgtatgaa gataaatacc taccttggag gccggaaaag tacggaaggc tggaaagtga      1500
     tcaaagggtt gcgacggaat aaaatgcgcg acatcatatc tccgatacca attgacaaga      1560
     tggaggacta ttttaaagat ttattaacgg agaggcgacc cgagtttcaa ggcggagtca      1620
     taagcactaa agaagattcc aacgtggaga tccagctcca agatgtagtg aaggctgtga      1680
     gggagttgaa aactcgcaga gctcctggac ctgggggtat accggcggag ttgataaaat      1740
     gtggcaccgg taaactattt gaacatctga ggaaactcat gcaagactgt ttgcatggtt      1800
     ccgaaatacc aaaggattgg aaggaatctt ggattactcc cagtcataag aaaggtagta      1860
     agcaagattg cgacaactac agaggtatat cggtcacagg aaccttgagc aaggtctacg      1920
     gtaaaattct caaggcaaag gtcgaagagg tttggagcgg ccaggaagcc gaagaacagg      1980
     ctggttttag agccggtagg tctaccgtcg accatttgtt caccattacc caggtcatcg      2040
     agaagaaaag ggcggtcagc caggagctgc acttggtgtt tgtggatctt cagaaagctt      2100
     atgacagcgt gccgttagtg aagctttggg aagccttgga aaaaaggggt tttagcaaag      2160
     gacttgtggg ggcaattaaa tcattttata acgggacgat agcaagaatt aaatgtcgtg      2220
     gagagttgtc cggaggtttt ttcgtcacaa aagggctaaa acaaggctgt tgtttgtcac      2280
     caacactatt taaggtatac ctagagcacg ttttaaagga atggaaaaat aaggttgcgg      2340
     gaatgggcgt tccactcctt gatgggcaga ccctttatac tctatgcttt gccgatgacc      2400
     agatcgttgt agctcaagat gaggaagatg cagattacat gacgcggaag ttggtcgaag      2460
     aatatcggaa atggggcatg gacgttagtg tgtccaagac agagaagctg gtcgtgggag      2520
     cagcgcatca acggcaaagc atagagcttg aggatggacg gcgcatcgaa gagtgtgacg      2580
     agtataagta tctcggtgtc tggctcgatc aggatggaag gatggataga gcaattaagg      2640
     acaggatcat ccagggcagg agagccatcg cgatgctgaa cggggtgctc tgggatcaga      2700
     gcatctcaaa ggcaaacaag caccggatat atgacgccat cgttaaaagt atcgtgctct      2760
     atggtagtga agtgtggcct ttgacgaaaa gaacgcaaga aatgttgagg gcaactgaaa      2820
     tggatttttg gcggcgatct gccggcattt cgagacggga ccgtgtccgt aatgagagaa      2880
     ttcgccaggt gatgaaggtt gagaaagata tcgtgcacga cgtcatgtcc aggcagttat      2940
     gctggtatgg acatgtgcaa agaatgtcgg aggagaggtt gcccaaacaa gttttggatt      3000
     gggtaccacc tgggaagagg cgacggggac gtcccgtaaa gggttggcgg cagggcgttg      3060
     acgaagagat gttgcggtgt cagttgcccg ataacctctg ggaagacagg catatgtggc      3120
     gtttgggtgt cgtagaacgc cagagtgcgt tataaagcga ctctatatat atatat          3176
//
ID   RTE-2_CQ    repbase;    DNA;    INV; 3642 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3642
RA   Kojima K.K. and Jurka J.;
RT   "RTE non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 612-612 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~94%
CC   identity. ~80% identical to RTE-1_CPi.
XX
FH   Key           Location/Qualifiers
FT   CDS           616..3621
FT                 /product="RTE-2_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MARRLEIRNKRQKPIEKQTTDWRLGSWNCRSLNFLGF
FT                 EFALAXELQPRNFDVVALQEVCLEEEQVLDWPGRQTNSRFXLSGGKDKKLG
FT                 TGFIVRGKMQDRVFGFTAXSERMCKLRIRGRFFNYSIINVHCPHEEKTDDE
FT                 KEAFYATLEEVYDGCPRQDVKIIIGDMNARFGREEMFRPTIGPESLHAVTN
FT                 DNGQRCIDFAASRGMVVRSTYFPRKDIHKATWTSPDQRTKTQIDHVLIDGR
FT                 FFSDVTHVRTFRGANIDSDHYLVGVDMRSKLSTVFNQRRSRRAPPFNTACL
FT                 QNGEVAHSYAQQLEANLPGEEELGAASLEDGWSRIRSAIGSAAEATLGSAI
FT                 RVSRNDWYDDECQRITAEKKAAYDRKLHKATRGNVERYRQARNRQVAVFKL
FT                 KKRQQEDRDCAEMEQLFRANETRKFYEKVNRSRKGFVPRADVCRDNGGNLI
FT                 VNKSEVLDRWKQYFNEHLNGDEADGDGVGVNLGAPAADEQFPAPDLETVKR
FT                 EIRKLKNNRAAGKDRLPGELFKYGGEKLARALHCVISKIWEEEKLPEEWMD
FT                 GVVCPIYKKGDKLDCGNYRGITLINAAYKILSQILCRQLSPHARRFVGPYQ
FT                 AGFTGARATTDQIFCLRQILEKCREYNVPTHHIFIDFKAAYDTVDREQLWQ
FT                 IMHENGFPDKLTRLIKATLDGVMCHVRVSGXLAEPFGSRRGLRQGDGLSCX
FT                 LFNIVLEGIIRRAGIETSGTIMNKSYQLLAFADDIDIVARNLETVMDVYTR
FT                 LKVQARRVGLGMNTTKTKYMRGRGSKDVGPPSLTPLTVDGDELEEVSEFVY
FT                 LGSLVTADNDTSKEIRTRIFAGNRAYFGLRKTLTSDRVQRRTKLTMYRTLI
FT                 RPVVLYGHETWTMRQEDERALGVFERKVLRTIYGGVQVSDGVWRRRMNHEL
FT                 HAFLEEPTIATQAKIGRLRWAGHVARMDESQPVRLLFDRAEPAGGTGRRAG
FT                 KPRARWGDQVNGDIRKICNLGNWRVAAQDRERWKRLLATARVPGALC"
XX
SQ   Sequence 3642 BP; 928 A; 896 C; 1112 G; 695 T; 11 other;
     gtgtgtgtgc gtcgcgcgtt attatcgcgc ctcggtgcgg ctccgcgaaa gtgccctcag        60
     aaccgcagaa ttaccgttcc gtcgtggccg aaagtgtgat caatcaacgc cgaagtgcgt       120
     cgcgaaccgg cgtcgtgtgt tataattgac ccgcaatcga cggctgggca ataaaagtga       180
     agttattttt gccgtccatc gtcgtcgtcg cgggaaaaca ggcagaacaa agcaagaagt       240
     gtggtgtagc aacaagacca gtggcagtgc cgttgtgtcg gttgcgtata cgcacactaa       300
     tcgaaaccgc gcgcggtgtg ccgagagtgc gaatttttga aaaaagaaaa cgggcaaaaa       360
     gttttgaact tttttgcaaa aaataaaata aattttatta ttgcgaaatt tggcgctagt       420
     agtgaagcgc atttacgcac gcagcggagg acgtcctctt ccggatatga agaccgttag       480
     gcttcgagat aaaagccccg ttacggtakc gtgagaaaac cggggctagg tctcggtagc       540
     ccgtaggtgg ttctccaccc cgagactagg tagcgcagcc ctgataaggc tgcctaccga       600
     aaaagaggat cgcgaatggc aagaaggcta gaaatccgga acaaacggca gaagcccata       660
     gaaaagcaga ccaccgattg gcgactcggc tcttggaact gcaggtcttt gaatttcttg       720
     ggtttcgaat tcgccttagc gaakgagttg caacctcgca acttcgatgt tgtggcactg       780
     caggaggtgt gcttggagga ggagcaggtg ctcgactggc caggtcggca gaccaattcc       840
     cggttttwtc tgagcggcgg caaggacaag aagctgggta ccggctttat cgtgcggggc       900
     aagatgcagg atcgcgtgtt cggcttcacg gcgwtcagcg agcggatgtg taagttgagg       960
     ataagaggcc gtttcttcaa ctacagcatc atcaacgtgc actgccccca cgaagaaaag      1020
     accgatgatg agaaggaagc attctacgcg acgctggagg aggtgtacga cggctgtccg      1080
     cggcaggatg taaaaatcat cattggggac atgaacgctc ggttcggaag ggaggaaatg      1140
     tttcgaccga caataggccc agaaagtcta catgcggtca cgaacgacaa cggccaacgc      1200
     tgcatcgact tcgcagcctc ccgtggaatg gtggtcagga gcacctactt tcctcgcaag      1260
     gacatccaca aagccacctg gacatcacct gaccaacgga cgaaaacgca aatcgaccac      1320
     gtcctgatcg acggccgatt cttctcggac gtaacgcacg tgcgcacctt tcgcggtgcg      1380
     aatattgact cggaccacta cctagttgga gttgacatgc gctcaaagct gtcgacggtg      1440
     ttcaaccaac gccgaagccg gcgggcccct ccgttcaaca ccgcgtgtct ccagaacggg      1500
     gaagtggccc acagttacgc gcagcagctg gaagcgaatc tgccaggtga ggaggaactt      1560
     ggcgcagcct cgctcgaaga tggttggagc cgtattcgct cagccatcgg cagtgcagcg      1620
     gaagccacac tgggtagtgc gatccgagtc agccgaaacg attggtacga cgacgagtgc      1680
     caacggatta ccgccgagaa gaaggcagct tacgacagga agctgcacaa ggcgacgaga      1740
     gggaacgtgg aacgatacag gcaggctcgg aatcggcagg tcgcggtctt caagcttaag      1800
     aagcgccagc aggaagaccg ggattgcgca gaaatggagc agctattccg agctaacgaa      1860
     acgcggaagt tttacgagaa ggtgaaccgg tcccgcaaag gcttcgtgcc gcgagccgac      1920
     gtgtgcaggg acaacggkgg aaacctgatc gtaaacaaga gcgaggtgtt ggacaggtgg      1980
     aagcagtact tcaacgagca cctcaacggc gatgaagcgg acggagacgg cgttggagtc      2040
     aaccttggag cgcccgcagc tgatgaacag ttcccagcac ctgatctgga gacggtgaag      2100
     agggagatca ggaagctgaa gaacaacaga gctgccggma aggatcggtt acccggtgag      2160
     ctcttcaaat atggaggaga gaaactggcg agggcgcttc actgcgtgat ctccaagatc      2220
     tgggaggagg agaagctacc ggaggaatgg atggatggtg tcgtgtgccc catctacaaa      2280
     aagggcgata agctggactg cggcaactac cgcggcatta cgcttatcaa cgcggcctac      2340
     aaaatcctct cccagatcct ctgccgtcag ctgtcacccc atgcaaggag gttcgtgggg      2400
     ccctaccaag cgggcttcac tggcgcgcgc gccaccacgg accaaatatt ttgtctccga      2460
     cagatcctcg agaaatgtcg tgagtacaac gtgcccacac atcacatctt catcgacttc      2520
     aaggcggcct atgatacagt cgaccgcgag cagctatggc agatcatgca cgagaacgga      2580
     tttccggata aactgactcg gctgatcaag gctaccttgg atggtgtgat gtgtcacgtg      2640
     cgtgtttcgg gggawttagc ggaacccttt ggatcacgcc gagggctgcg gcaaggtgat      2700
     ggcttatcct gtkcgctgtt caacatcgtc cttgagggca ttattcgaag ggcgggcatc      2760
     gaaacgagtg gcacgattat gaacaagtcc taccagttgc ttgcttttgc cgatgacatc      2820
     gacattgtgg caagaaacct ggagacggtg atggacgtct acacccgact gaaggtacaa      2880
     gcaaggcgtg taggacttgg catgaatacg acgaagacga agtacatgag aggaaggggt      2940
     tcgaaggatg tcggcccccc aagtctcacc cctctaactg tggatggtga tgagttggag      3000
     gaggtgagcg agttcgtgta cttgggatcg ctggtaaccg ccgacaacga caccagcaaa      3060
     gagatccgga ctcgtatttt tgctgggaat cgtgcstact tcggattacg gaagactctc      3120
     acwtcggatc gagtgcaacg ccgcacgaag ctgacgatgt acagaacact gatcagaccg      3180
     gtagtcctct atggccacga gacctggacg atgcggcagg aggacgaacg tgcccttgga      3240
     gttttcgaac ggaaggtgct acgaacgatc tacggtggag tgcaggtgtc tgacggagtg      3300
     tggcgamgac gcatgaacca cgaactgcac gcgtttcttg aagaaccgac catcgccacc      3360
     caggcgaaga tcgggaggct caggtgggcc ggccatgtcg cccgaatgga cgaaagccag      3420
     cctgtcagac tgctttttga ccgcgctgaa ccagctggcg gaacaggcag aagagcaggg      3480
     aaaccgcgcg cacggtgggg agatcaagtg aatggtgata tccggaagat ctgtaacctg      3540
     ggaaattgga gagtagcagc acaagaccga gaaagatgga agcgtcttct tgctacagca      3600
     cgcgtacctg gtgcgctatg ctgattggta tggtatggta tg                         3642
//
ID   RTE-2_DAn   repbase;    DNA;    INV; 3251 BP.
XX
AC   .
XX
DT   04-JAN-2012 (Rel. 17.03, Created)
DT   04-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from fruit flies.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3251
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 406-406 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           425..3220
FT                 /product="RTE-2_DAn_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRWIGQGCLRKKNCDIYYSCHPERHEFGCGFVVGARL
FT                 RRRVSHFLPINERLATIRITAKFFNISLICAHAPTEEKDDVTKDAFYAELD
FT                 RAYGRCPSHDIKILLGDFNAKVGREDIFGATVGQFSLHETTSSNGLRLIGF
FT                 AAAHNMVVRSTGFRHLDIHKASWLSPDRLTRNQIDHVVIDARHASNVLDVR
FT                 SCRGPNIDSDHYLVAAKIRTRLCVAKVARRGLLRKLDIGKLQSQRTRDAFS
FT                 TQVTGLLSRATPTPEDISNMWALISHSLRTSAEEVIGFQRTPKRNPWYDQE
FT                 CRDATAAKDAAYGRTLQAGATRAVVEVYRSRRRDEKRLFRRKKREQERREC
FT                 ESIESSRDRNEARNFYQRVKRLTQGFKTGGVACKDDDGNLITDAEIVLRLW
FT                 RDHFSSLLAGSGHDDYGEYDPQTPIYGTDVDVPTPSHAEVKDAIQRLKNNK
FT                 SAGADGLPAELFKAAGDMLVGSMHKLISKIWLTESMPDDWXHSMICPILKK
FT                 GDATLRTNYRGISLLPVAYKVLTSVLCEXLKPHAEALIGPYQCGFRPGKST
FT                 IDQIFTLRQILEKSYENQIDTYHLFVDYKAAFDSPRRDRLYAAMSELGIPA
FT                 KLIRLCMMTLSNTISSVRVGNDQSETFYTKCGLRQGDSLSCMLFNILMESI
FT                 IRKAGVHRTGTILTNRCVQLLGYADDIDIIGRTKRDVTAAFGAIEKESAKV
FT                 GLAVNMDKTKFMVCSSRESRRLDSQLSAGSHSFESVKEFIYLGSAISSTND
FT                 VSLEIKRRITLANRCYFGLSRHFNSRALSRPTKITLYRTLILPVLLYGAEC
FT                 WTVVQSDAAALGVFERKILRKIFGPICVGDAYRTRWNHELYELYGDVDIVS
FT                 RVKIQRLRWLGHIARMEEDAPARKVFDAVIVGKRRRGRPRIRWQDQVMEAL
FT                 STSGVTNWRARAQDRKAWRQIVQQAVTR"
XX
SQ   Sequence 3251 BP; 893 A; 769 C; 841 G; 743 T; 5 other;
     ggggagaatg ggggagatta tataaggtaa agtgtctgat tgcactcaac ttggtgaatg        60
     ccagcatgat ccttatcact gctctcccca agccgacgca ctacctccac gtggttctcc       120
     ctggattgtc actcaacacc cgttgtctga caaactaaag cgcgcgacga gagtcctagc       180
     tcttcaaact aggttgtggc gtaggacttg aaatccaccc acggaaaaca aatcttcagt       240
     gaatgtagca gatgaagcct cggaacggaa ccaatctaaa gttgacgacc atggcacacg       300
     taaaaaggac aatgatttga gagtatgcac ttggaatgta cgcacattgt acagaccagg       360
     tgctgctcaa cagctagcag ataccctcaa taaatgtagg gctgacatca ctgctatcca       420
     ggaaatgcga tggataggac aaggttgcct taggaagaag aactgcgaca tttactacag       480
     ctgccatcca gaacggcatg aatttggctg tggcttcgtt gtaggcgcca gactgcggcg       540
     ccgggtctct cactttctgc caataaacga gagacttgca acgatccgaa ttactgccaa       600
     attcttcaac atcagcctga tatgtgcgca tgccccaacc gaagaaaagg acgatgtcac       660
     caaggatgct ttctatgcgg agctcgaccg ggcttacgga cgctgtcctt cccatgacat       720
     taagatcctc cttggggatt ttaatgccaa ggtagggcga gaagacatct ttggtgccac       780
     cgtcgggcaa tttagtctac acgagaccac ctcgagcaat ggtctcagat taataggctt       840
     tgctgcagcg cataatatgg tagttcgtag tactgggttt cgtcatttgg acatacacaa       900
     ggcatcatgg ctctctcctg atcgactgac cagaaatcag atmgatcatg ttgtgatcga       960
     tgcaaggcat gcatctaacg tactcgacgt gcgatcctgt cggggtccca acatcgactc      1020
     cgaccattat cttgttgcag ctaagattcg cacacggcta tgtgttgcga aggttgcacg      1080
     tcgaggactg ttgagaaagc tggacatcgg gaagctgcaa tcacaacgga caagggatgc      1140
     attctccact caagtcacag gcctactgag ccgagcaact ccaacacctg aagacatcag      1200
     caatatgtgg gcactcatat cccactccct gcgaacttct gcagaagagg tcatcggatt      1260
     ccaacgtacc ccaaagagga atccatggta cgaccaggag tgtcgcgacg caacagctgc      1320
     aaaagacgcc gcctacggaa gaacactgca agctggggcc acaagggctg ttgtcgaggt      1380
     ctacaggtca aggaggagag atgagaaacg cctcttcaga cgcaagaaga gagaacagga      1440
     gaggcgtgag tgtgagagca ttgagagcag cagagaccgg aatgaagctc gtaacttcta      1500
     ccagagggtt aagcgtctga cccaaggttt taagactgga ggagttgcgt gcaaggacga      1560
     tgacggaaac ctaatcacag atgcagagat tgtgctgagg ttatggaggg atcacttctc      1620
     aagtctatta gctggctctg gccatgatga ctatggagag tatgatccac aaaccccaat      1680
     ctatggtact gatgtggacg taccgacccc aagccatgcc gaagtcaagg atgcaatcca      1740
     acgacttaaa aacaataaat ccgcaggtgc tgacggcctg ccggctgaat tgtttaaggc      1800
     tgctggtgat atgttggtag ggagcatgca caaactaatc agcaagatat ggcttacgga      1860
     gagcatgccc gacgattggw accacagcat gatctgtcct atcctgaaga agggtgatgc      1920
     cacattgcgc accaattacc gtggcattag tcttcttcca gtcgcataca aggtccttac      1980
     gagcgtactg tgtgaaaamc tkaaaccmca tgccgaagca ctgattggac cttatcagtg      2040
     cgggttcagg cctggcaaat ccactattga ccagattttc accttgcgcc aaatcctgga      2100
     gaagtcctac gaaaatcaga tcgacacata tcacctcttc gtcgattaca aggcagcatt      2160
     cgatagtccc cggcgagatc gcctatatgc cgccatgtct gagcttggta taccagcaaa      2220
     gctaatacgg ctttgcatga tgacattgag caacaccatc agctctgtca gggtaggaaa      2280
     tgaccaatct gaaacctttt ataccaagtg tggtctcaga caaggcgact cgctgtcttg      2340
     tatgctcttc aacattctaa tggagagtat tataaggaag gctggtgtgc atcggacggg      2400
     cactattcta acaaacagat gtgtccaact ccttggctac gctgatgata ttgatatcat      2460
     tggccgaacc aagcgtgatg ttacagcagc cttcggggct attgaaaaag agtcagctaa      2520
     agtaggactg gcagttaaca tggataagac aaagtttatg gtgtgctcta gcagggaatc      2580
     gcggcgtctt gattcccagc tatctgcagg aagccatagc tttgagtccg tgaaggaatt      2640
     catttacctt ggatctgcaa tatctagcac aaatgatgtc agcctggaga ttaagcggag      2700
     aatcacactt gccaacaggt gctactttgg gctcagtagg cactttaaca gtagagctct      2760
     ctctcgaccg acaaaaataa cactctacag gacgctcatt cttccagtac tcttatatgg      2820
     tgcggagtgc tggacagtgg tgcaatccga tgcagctgct cttggagtgt tcgagagaaa      2880
     gattctccgc aaaatctttg gtccaatctg cgttggcgat gcttatcgca ccagatggaa      2940
     ccacgagctg tatgagctgt acggggatgt tgatatagta agccgagtca aaattcaaag      3000
     actccgctgg ctgggtcaca tcgcccgtat ggaagaagac gctccggctc gtaaggtatt      3060
     tgatgcggta atcgtcggaa aacggaggag aggacgaccc cggatacgtt ggcaggacca      3120
     ggtgatggaa gccctgtcta catctggtgt taccaactgg cgagcgcggg cccaggacag      3180
     gaaagcgtgg aggcagattg tgcaacaggc tgtgacccga tagggttgtg atggccattt      3240
     atatattata t                                                           3251
//
ID   RTE-2_DBp   repbase;    DNA;    INV; 3254 BP.
XX
AC   .
XX
DT   07-MAY-2012 (Rel. 17.05, Created)
DT   07-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila bipectinata genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3254
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila bipectinata
RT   genome.";
RL   Repbase Reports 12(5), 731-731 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~89% identical to
CC   that of RTE-2_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           228..3218
FT                 /product="RTE-2_DBp_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="NTISVKEAREASERNRSNVDDHSKRKKDNDLRVCTWN
FT                 VRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQGCIKKKNCDIYYSCHP
FT                 ERHEFGCGFVVGARMRRRVSHFRPTNERIATIRITAKFFNISLICAHAPTE
FT                 EKDDATKDAFYAELDRAYGRCPSHDIKILLGDFNAKVGREDIFGATVGRFS
FT                 LHETTSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDRLTRNQIDH
FT                 VVIDARHASNILDVRSCRGPNIDSDHYLVAAKIRTRLCVAKIARRSALRRL
FT                 DIGKLQSQQAKNAFSTHVSGLLSRAPSIPEDISDMWALISHSLRASAEEVL
FT                 GFQRPLTRNPWYDQECHDATAAKDAAYRRTLQAGATRAIVDVYRSRRRDEK
FT                 RLFRRKKKEQEGRECESTESSRRRNEARNFYQRVKRLTQGFKTGAVACRDD
FT                 DGNLVTEAEVVLRLWRDHFSSLLSGSSTDSEDYDPRTPIYGTDIEVPIPSH
FT                 IEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIWLTESMP
FT                 EDWNLSMICPILKKGDATVRTNYRGISLLPVAYKVLTSVLCERLKPHAEAL
FT                 IGPYQCGFRPGKSTVDQIFTLRQILEKSYENQIDTYHLFVDYKAAFDSPRR
FT                 DRLYAAMSELGIPAKLTRLCRMTLSNTISSVKVGSGQSETFTTKCGLRQGD
FT                 SLSCILFNILMESIIRKAGVHRTGTILTNRCVQLLGYADDIDIIGRTKRDV
FT                 TGAFGAIEKESAKVGLAVNMEKTKFMVCSSRESRRLDSQLTAENYSFGSVK
FT                 EFIYLGTAITSTNDVSLEIKRRITLANRCYFGLSRQFNSRALSRRTKTTLY
FT                 KTLILPVLLYGAECWTVTQSDAAALGVFERKILRKIFGPICVDDVYRIRYN
FT                 HELYELYGDVDVASRVKSQRLRWLGHVARMDEDAPARKVFDAVIVGTRRRG
FT                 RPRTRWQDQVMETLSTLGVTNWRRRAQDRDAWRHIALQAETR"
XX
SQ   Sequence 3254 BP; 914 A; 758 C; 844 G; 737 T; 1 other;
     tggggagaat gggggaaagc atacaggtca aagtgtctga ttgcattcaa cttggtgaat        60
     gccagcatga ttcctgtcac tgctttcttc aagccgacgc actacctcca cgtggttctc       120
     cctggattgt cgctcgacag ccgttgagtg gcaaactaaa gcgcgcgacg agagtcctaa       180
     ctctacaaac taggttktgg cgtaggactt gaaatccacc catgtaaaac acaatttcag       240
     tgaaggaagc aagagaagcc tcggaaagga accgatctaa cgttgacgac catagcaagc       300
     gtaaaaagga caatgatttg agagtatgca cctggaacgt acgaacattg tacagacctg       360
     gtgctgctca acaactagca gataccctca acaaatgtag ggctgacatc actgctatcc       420
     aggaaatgcg atggatagga caaggctgca taaagaagaa gaactgtgac atttactaca       480
     gctgtcatcc agaacggcat gaatttggtt gtggtttcgt tgtaggtgcc aggatgcggc       540
     gccgagtctc tcactttcgg ccaacaaacg agagaattgc aacgatccga attactgcca       600
     aattctttaa catcagcctg atatgcgcac atgccccaac ggaggaaaag gatgatgcca       660
     ccaaggacgc tttctatgcg gagctcgacc gagcttatgg ccgctgtcct tcccatgaca       720
     ttaaaattct cctcggggat tttaatgcca aggtagggcg agaagacatc tttggtgcca       780
     ccgtcgggcg atttagtcta catgagacca cctcgagcaa tggtctcaga ttaataggct       840
     ttgcagctgc gcataatatg gtggttcgta gtactggatt ccgtcatttg gacatccata       900
     aagcatcttg gctctctccc gatcgactga ccagaaatca gatcgatcat gttgtgatcg       960
     atgcaaggca cgcatctaat atactcgacg tgcgatcctg tcggggtccc aacatcgact      1020
     ccgaccatta tcttgttgca gctaagattc gcacacggct atgtgtggcg aagattgcac      1080
     gtcgaagtgc gttaagaagg ctggacatcg gaaagctgca atcacaacag gcaaagaatg      1140
     cattctccac tcacgtctcg gggctattaa gccgagcacc ttcaatacct gaagacataa      1200
     gcgatatgtg ggcgctcata tctcactccc tgcgagcttc ggcagaagaa gtgcttggat      1260
     tccagcgtcc tctaacaagg aatccatggt acgatcagga gtgtcatgac gcaacagctg      1320
     caaaggacgc cgcctacaga agaacactgc aggctggggc gacacgagct attgtggatg      1380
     tatacaggtc gagaagaaga gacgaaaaac gccttttcag acgcaagaag aaagagcagg      1440
     aagggcgaga gtgtgagagc acagagagca gcagacgcag aaatgaagca cgtaacttct      1500
     accagagggt caagcgtctg acccaaggat ttaagactgg tgcagtggcg tgcagggacg      1560
     atgatggaaa tcttgtcaca gaagcagagg tcgtgctgag gttatggagg gatcacttct      1620
     cgagtctgtt atctggctca agcacagact ctgaagacta tgatccacga accccaatct      1680
     atggcactga tattgaagtg ccaatcccaa gtcatatcga agtcaaggat gcaatccaac      1740
     ggcttaaaaa caacaagtct gcaggtgctg acggcctgcc ggcagaattg tttaaggcag      1800
     ctggtgatat gttggtaggg agcatgcacc aactaatcag taagatatgg ctcacggaga      1860
     gcatgcccga agattggaac ctcagcatga tctgtcccat cctgaagaag ggtgatgcca      1920
     cggtgcgcac caactaccgc ggaattagtc ttcttccagt tgcatacaag gtcctaacga      1980
     gcgtattgtg tgaaagactg aaaccccatg ctgaagcact gattggacct tatcagtgcg      2040
     ggttcaggcc tggcaagtcc actgttgacc agattttcac cttgcgccaa atcctggaga      2100
     agtcttacga aaaccagatc gacacgtacc atctcttcgt cgactacaaa gccgcatttg      2160
     atagcccccg gcgagatcgc ctatatgccg ccatgtctga gcttggtata ccagcaaagc      2220
     tgactagact ttgcagaatg acattgagca acaccatcag ctctgtcaag gtaggaagtg      2280
     gccaatccga aacctttact accaagtgtg gcctcagaca aggtgactcg ctgtcttgta      2340
     tactcttcaa tattttaatg gagagtatta taagaaaggc tggtgtacat cggacgggca      2400
     cgatattaac caacagatgt gtccagctcc ttggttacgc tgatgatatt gatatcattg      2460
     gccgcaccaa gcgtgatgtc acaggagcct tcggggctat tgaaaaggaa tcagcaaaag      2520
     taggactagc agtgaatatg gagaaaacaa agtttatggt gtgctctagc agagaatcgc      2580
     ggcgtcttga ttctcagctg actgcagaaa actatagctt tgggtccgtc aaggagttta      2640
     tctacctagg cactgctata acaagcacaa atgatgtcag tctggagatt aagcggagaa      2700
     taacacttgc caacaggtgt tactttgggc tcagtaggca gttcaatagt agagctctct      2760
     ctcgacgcac aaaaaccaca ctctacaaga cgctcattct tccagtactc ctatatggtg      2820
     cggagtgctg gacagtgacg cagtcagatg cagctgctct tggagtgttc gagaggaaaa      2880
     ttcttcgcaa aatctttggt ccaatctgcg tggacgatgt ttatcgcatc agatacaacc      2940
     acgagctgta tgagctgtac ggtgatgttg acgtagccag tcgagtgaaa tctcaaagac      3000
     ttcgctggct gggccacgtt gcccgtatgg atgaagacgc tccggctcgt aaggtgtttg      3060
     atgcggtgat tgttgggaca cgaaggagag gacgaccccg aacgcgttgg caagaccagg      3120
     tgatggaaac cctgtccaca cttggtgtta ccaactggcg aaggcgcgct caggacagag      3180
     acgcgtggag gcacattgcg cttcaggccg agacccgata aaagggttgt catggccata      3240
     taataataat ataa                                                        3254
//
ID   RTE-2_DF    repbase;    DNA;    INV; 3249 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3249
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 991-991 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~93% identical to RTE-2_DAn.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..3226
FT                 /product="RTE-2_DF_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKEAEEASERDRFNVDDHGKRKKDNDLRVCTWNVRTL
FT                 YRPGAAQQLADTLKKCRADIAAIQEMRWIGQGCIKKKDCDIYYSCHPERHE
FT                 FGCGFVVGARLRRRVSHFLPINERLATIRITAKFFNISLICAHAPTEEKDD
FT                 VTKDTFYAELDRAYGRCPSHDIKILLGDFNAKVGREDIFGATVGRFSLHET
FT                 TSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKATWLSPDRLTRNQIDHVVID
FT                 ARHASSVLDVRSCRGPNIDSDHYLVAAKIRTRLCVAKVARRGLLRRLDIGK
FT                 LQSQQTRDAFSTQVSGLLSRTTPTPEDISDQWALISHSLRTSAEEVIGFQR
FT                 PPTRNPWYDQECRDATAAKDAAYRRTLQAGATRAVVEVYRLRRRDEKRLFR
FT                 RKKREXEKRECESIESSRCRNEARNFYQRVKRLTQGCKTGGVACKDNDGNL
FT                 VTDAEIVLKLWRDHFSSLLAGSGTGYEDYDPQTPIYGTDIDVPTPSHAEVK
FT                 DAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIWRTESMPEDWN
FT                 LSMICPVLKKGDATLRTNYRGISLLPVAYKVLSSVLCENLKPHAEALIGPY
FT                 QCGFRPGKSTIDQIFTLRQILEKSYENQIDTHHLFVDYKAAFDSPRRDRLY
FT                 AAMSELGIPAKLIRLCRMTLSNTISSVKVGNDQSETFSTKCGLRQGDSLSC
FT                 MLFNILMESIVRKAGVHRTGTILSNRCVQLLGYADDIDIIGRTKRDVTAAF
FT                 GAIEKESAKVGLAVNMDKTKFMVCSSRESRRLDSQLTADSYSFESVKEFIY
FT                 LGTAITSTNDVSLEIKRRVTLANRCYFGLSRHFNSRALSRQAKITLYKTLI
FT                 LPVLLYGAECWTVVQSDAAALGVFERKILRKIFGPICVGDAYRIRWNHELY
FT                 ELYGDVDVVSRVKIHRLRWLGHIARMEEDAPARKVFDAVIVGKRRRGRPRM
FT                 RWQDQVMEALSTSGAANWRRRAQDRDAWRQIVQQAVTRQGL"
XX
SQ   Sequence 3249 BP; 896 A; 770 C; 849 G; 733 T; 1 other;
     ggggggatgg gggagagcat ataaggcaaa gtgtctgact gcattcaact tggtgaatgc        60
     cagcatgatc cttatcactg atctcctcaa gccgacgcac tacctccacg tggttctccc       120
     tggattgcca ttcaacatcc gttgagtggc aaactaaagc gcgcgacgag agtcctagct       180
     cttcaaacta ggttgtggcg taggacttga aatccaccca tggaaaaacc aaaattcaat       240
     gaaagaagca gaagaagcct cggaacggga ccgatttaac gttgacgacc atggcaaacg       300
     aaaaaaggac aatgatttga gagtatgcac gtggaatgta cgaacactgt acagaccagg       360
     tgctgctcaa caactagcag ataccctcaa aaaatgtagg gccgatatcg ctgctatcca       420
     ggaaatgcga tggatagggc aaggttgcat taagaagaag gactgcgaca tctactacag       480
     ctgccatcca gaaaggcatg aatttggctg tggcttcgtt gttggcgcca gactgcggcg       540
     ccgagtctct cactttctgc caataaacga gagacttgca acgatccgaa ttactgccaa       600
     attcttcaac atcagcctga tatgcgcgca cgctccaacc gaagaaaaag acgatgtaac       660
     caaggatact ttctatgcgg agctcgaccg agcttacggc cgctgccctt ctcatgacat       720
     taaaatcctc cttggggact ttaatgccaa ggttgggcga gaagacatct ttggtgccac       780
     cgtcgggcga tttagtctac atgagaccac ctcgagcaat ggtctcagat taataggctt       840
     tgctgcagcg cataatatgg tagttcgtag tactgggttc cgtcatttgg acatacataa       900
     ggcgacgtgg ctctctcccg atcgactgac cagaaatcag atcgatcatg ttgtgatcga       960
     tgcaaggcat gcatctagcg tactcgacgt gcgatcctgt cggggtccca acatcgactc      1020
     cgaccattat cttgttgcag ctaagattcg cacacggtta tgtgttgcga aggttgcacg      1080
     tcgaggactg ctgagaaggc tggacatcgg aaagctgcaa tcacaacaga caagggatgc      1140
     attctccact caagtctctg gcctattgag ccgaacaact ccaacacctg aagacatcag      1200
     cgatcagtgg gcgctcatat cccactccct gcgaacttcc gcagaagaag tcattggatt      1260
     ccagcgcccc ccaacaagga atccatggta tgaccaggag tgtcgggacg caacagctgc      1320
     aaaagacgcc gcctaccgaa gaacactgca agctggggct acacgggctg ttgttgaggt      1380
     ctacaggtta aggagaaggg atgagaaacg ccttttcaga cgcaagaaaa gagaacakga      1440
     aaagcgagag tgtgaaagca tagagagcag cagatgccga aatgaagctc gtaacttcta      1500
     tcagagggtt aagcgtctga cccaaggttg taagactgga ggagttgcat gcaaggacaa      1560
     tgacggaaac ctagtcacag atgcagagat tgtgctgaag ctatggaggg atcacttctc      1620
     aagcctgtta gctggctctg gcacgggcta tgaagattat gatccacaaa ccccaatcta      1680
     tggtactgat atagatgtac cgaccccaag ccatgccgaa gtcaaggatg caatccaacg      1740
     actcaaaaac aataaatctg caggtgctga tggcctgccg gctgaattgt ttaaggcagc      1800
     tggtgatatg ttggtaggga gcatgcacca actaatcagc aagatatggc gtacggagag      1860
     catgcccgaa gattggaacc tcagcatgat ctgtcctgtc ctgaagaagg gtgatgccac      1920
     attgcgcacc aattaccgtg gcattagtct tcttccagtc gcatacaagg tcctttcgag      1980
     cgtactgtgt gaaaacctga aaccccatgc cgaagcactg attggacctt atcagtgcgg      2040
     gttcaggcct ggcaaatcca ctattgacca gattttcacc ttgcgccaaa tcctggagaa      2100
     gtcctatgag aaccagatcg acacccatca tctattcgtc gattacaagg ctgcattcga      2160
     tagtccccgg cgagatcgcc tatatgccgc catgtctgag cttggtatac cagcaaagct      2220
     gatacggctt tgcaggatga cattgagcaa caccatcagc tctgtcaagg taggaaacga      2280
     ccaatccgaa acctttagta ccaagtgtgg tctcagacaa ggtgactcgc tatcttgcat      2340
     gctcttcaat attctaatgg agagtattgt aaggaaggct ggtgtgcatc ggacgggcac      2400
     gattctgtca aacaggtgtg tccaactcct tggttacgct gatgatattg atatcattgg      2460
     ccgaaccaag cgtgatgtta cagcagcctt tggggctatt gaaaaagagt cggctaaagt      2520
     aggactagca gtgaacatgg acaagacaaa gtttatggtg tgctcaagca gagaatcgcg      2580
     gcgtcttgat tctcagctga ctgcagacag ctatagcttt gagtccgtca aggaattcat      2640
     ctaccttggc actgctataa ctagcacaaa cgatgtcagc ctagagatta agcggagagt      2700
     cacacttgcc aacaggtgtt actttgggct cagtaggcat ttcaacagta gagctctctc      2760
     tcgacaggca aaaataacac tctacaagac gctcattctt ccagtactct tatatggtgc      2820
     ggagtgctgg acagtggtgc aatccgatgc agccgctctt ggagtgttcg agagaaagat      2880
     tctccgcaaa atctttggtc cgatttgcgt tggcgatgcc tatcgcatta gatggaacca      2940
     cgagctgtat gagctgtacg gggatgttga tgtagtcagt cgagttaaaa ttcacagact      3000
     ccgctggctg ggtcacatcg cccgtatgga agaagacgct ccggcccgta aggtgtttga      3060
     tgcggtaatt gtcgggaaac ggaggagagg acgaccccgg atgcgttggc aagaccaggt      3120
     gatggaagcc ctgtctacat ccggtgctgc caactggaga aggcgcgccc aggacaggga      3180
     tgcgtggagg caaatcgtgc aacaggctgt gacccgtcaa gggttgtgat ggccaattat      3240
     tattattaa                                                              3249
//
ID   RTE-2_DPl   repbase;    DNA;    INV; 3242 BP.
XX
AC   .
XX
DT   27-DEC-2011 (Rel. 23.01, Created)
DT   27-DEC-2011 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-3242
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 126-126 (2018).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..3210
FT                 /product="RTE-2_DPl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVAKVYGLGTARASPINDAQAHRPTPAISGQGLPCQV
FT                 RARLKTLVPQRKLRFATWNIGSLTGRCRELADVLMRRRVQCAFLQETRWKG
FT                 NKSRNIGQGYRLIYTGSPSGKAGVAVVLSEELRNGLLEVDRRCDRLMRVRV
FT                 LIEGVITNLISAYTPQAGCSGSEKESFWEQFEEVLRAIPAAEVIIVGGDLN
FT                 GHVGRAAETFDRVHGGFGYGRRNAEGENILRTCIASDLAVVNTFFQKTPQH
FT                 LITYKSGSHSTQIDYLLTRRCHISKVTNCKVIPGESLTAQHRLLVMDYVVT
FT                 PKKKVAEKRKPRIRWWLLNGTMQTSFRAEVESQNLSTNTETAQEVWDRAQS
FT                 AIITAGKRVLGLSKGGRVIDKETWWWNDEVQEVIREKKTAFKKWQQSNSPE
FT                 DRLEYIAAKRASKRAVARARSDRLSPLYDTLETAEGQKLIYKLARARDKAT
FT                 QDIAKCLSVKDSQGTLLCNHASVKERWRCYFKELLNTQHPCSLPTEIPPNL
FT                 GLIAPITPDETRNCLRRMKNRKAVGPDDIPIEAWKSLGSLGVLILTDLFNR
FT                 VLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDL
FT                 RLRRECTVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQK
FT                 AFDCVPRQCIWWALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPIS
FT                 VGLHQGSALSPFLFNVVLDTVSANIQDQPPWLMMYADDIALIDESRLTLER
FT                 RVNLWKGTLENGGLKLNVTKTEYMACGSPDSCTIHIGPEPAVKSEKFRYLG
FT                 SILHESGGIDHDVQARISAAWAKWRDVTGVVCDRRIPTKLKGIIYKSIIRP
FT                 VLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNTFIRGSLGVR
FT                 DVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGARPPGRPRKRWLDTV
FT                 KQDMRANGLTTADAKDRAKWRSLSRKADPG"
XX
SQ   Sequence 3242 BP; 838 A; 762 C; 881 G; 761 T; 0 other;
     atccagaggg tgtcctacta agtatttttc cgatatttag ccttgggcat acgggtacgc        60
     gaccccggat cctcgagcca ccactttcat acctctatcc tcagtccatg aaggtggtgt       120
     cctgtacctc ccctcattcc ccttcctaac ctctttcccc ccttctctat cttttccttt       180
     cctggtttta cccgtaaaac ggggttttgg aggtcagacg gcagtcgctc cgttaaaacc       240
     actcccgcca ctcttatggt tgcaaaagtt tatggactgg gtacggctag ggcgtcgccg       300
     ataaacgacg cgcaggcaca tcgccctaca cctgcgataa gtgggcaagg gctaccgtgt       360
     caagtacggg cacggctaaa gacgttagta ccccaaagga aactccgctt tgcaacgtgg       420
     aatattggct ctctaaccgg acgatgcaga gaactcgcag atgtactcat gagacgtcgg       480
     gtccagtgtg cgttcctcca ggaaactcgc tggaagggca ataagtctcg gaacatcgga       540
     cagggttacc ggctgatata cactgggtcg ccttcaggta aagctggtgt agcggtagtg       600
     ctatctgaag agcttcggaa tggtcttctt gaagttgatc gtcgctgcga ccgcctgatg       660
     cgggtgcggg tactgatcga gggagtgatt actaacttga tcagtgctta tactcctcag       720
     gctggatgta gcgggtccga aaaagagtca ttctgggagc aatttgaaga ggttctacgt       780
     gctataccag ctgctgaagt aatcatagtt gggggggact taaatggcca cgtaggtagg       840
     gctgcggaaa cgtttgaccg tgtacacggt ggttttggtt atggtcgccg caatgcagag       900
     ggagaaaata ttctcagaac ctgtattgcg tctgacttag ccgtcgtgaa cacgttcttc       960
     caaaagactc cacagcacct tatcacgtat aagagcgggt cccactcaac ccaaatagat      1020
     tatctgctga ccagacggtg tcatatcagc aaggtgacta actgtaaagt cattcctggt      1080
     gaaagcctga cggcccaaca tcgacttctt gtcatggact atgtcgttac cccgaaaaag      1140
     aaagtggccg agaaacgtaa gcctcgcatc aggtggtggt tgctgaatgg aacgatgcag      1200
     accagctttc gggcagaggt tgagagtcaa aatctgtcga ctaataccga aactgctcag      1260
     gaagtttggg atcgagccca gtcagcaatt atcacagcag gtaaacgagt tctaggcctt      1320
     tctaagggag gacgggtcat tgacaaggag acatggtggt ggaatgacga agtgcaggag      1380
     gtgattcgtg aaaagaagac tgcctttaag aagtggcagc aatcaaactc tcctgaagac      1440
     agactagagt acatagcagc gaaacgtgcc agtaaaaggg ctgttgccag agcccgcagt      1500
     gataggttat caccattata tgatacactt gaaactgcgg aggggcagaa gctcatttac      1560
     aaattggcac gagctcggga taaggcgacg caagatatcg caaaatgtct tagcgtcaaa      1620
     gattcccaag gcacgttgct gtgtaatcat gcctctgtga aggagagatg gagatgctac      1680
     ttcaaggagt tgctaaatac tcagcacccg tgcagtcttc caaccgaaat acctcctaat      1740
     cttggactta ttgccccgat aacacctgac gaaactcgga attgtcttcg acgcatgaag      1800
     aatcggaaag cggtgggacc tgacgatatt ccgatcgaag cgtggaaatc attgggctct      1860
     cttggtgtgc tcatactgac ggaccttttt aaccgcgtct tgaacactgg gactatgcca      1920
     catcagtggc gttatagtta cattacccct atatacaaag gcaggggcag tgttcaagat      1980
     tgtggtagtt ataggggcgt taagatcatg agtcacacca tgaagctctt tgagcgtatg      2040
     atcgacctca ggctccgccg agagtgtact gtctcggaat gtcaatatgg atttcagcca      2100
     ggatcgggca ccttggacgc catctttgcc atcagaactc tgatggaggc atacagggaa      2160
     aaaaggagag ctctgcatgt cgcattccta gatctgcaga aggcctttga ctgcgtgcct      2220
     cgtcaatgta tctggtgggc attgcgattc aaagggatcc ctgaggccta tattgacatc      2280
     atcagagaca tgtaccgcga ttccgtttca atggttagga ctgctgttgg cgatacaaaa      2340
     ccctttccga tctcagtagg gcttcaccaa ggctcggctc ttagcccctt cttgttcaat      2400
     gtagtgctgg acactgtctc ggctaacatc caggaccagc ctccatggct gatgatgtat      2460
     gccgatgaca tagcgctcat tgatgagagc aggttgacgc tagagcgaag agtgaacctc      2520
     tggaagggta cgcttgagaa cggtggtctt aaactaaatg tgacgaagac cgagtacatg      2580
     gcttgcggaa gcccggactc ttgcactatc catataggtc ctgaaccagc cgttaagtcg      2640
     gaaaagttca ggtaccttgg atctattctg catgagtccg gaggcatcga tcacgatgtc      2700
     caagcccgga tcagcgctgc ttgggcgaaa tggcgtgacg tcacaggtgt ggtctgcgat      2760
     cgcagaatac ctaccaagct caagggaata atatacaaga gcataatccg accggttctc      2820
     ttatatggaa gcgaatgttg gccaacactg tccaggcaca ctcaggagct tcacgtcacg      2880
     gagatgaaga tgctgaggtg gatgtgtggc gtaacgcggg ctgaccgtat acgtaacaca      2940
     tttatccgag gtagtcttgg agtccgtgac gtagcggata agcttcaaga gagtcgcctg      3000
     agatggtatg gccacgttgc acgccggcct gagaattacg tcggaaaaat ttgccttgat      3060
     atgtcggtcc ctggagcaag acccccagga cgcccaagaa agcgatggct ggacaccgtg      3120
     aagcaggata tgagagccaa tggacttacc accgcggatg ctaaagaccg tgcaaagtgg      3180
     aggagtttga gcaggaaggc agaccctggc taatgctggg ataattgcca ggaagaagaa      3240
     ga                                                                     3242
//
ID   RTE-2_Hmel  repbase;    DNA;    INV; 3169 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3169
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           172..3153
FT                 /product="RTE-2_Hmel_1p"
FT                 /translation="PPMKGTNTPRPPVPGGPAIPGYDSGLGHGGAGGAKNL
FT                 RQRFGCQKSKRPLHLATYNTRTLRTDEKIKELEEEIGKLKWNIIGLSEVRR
FT                 QGEDTVILKSGNLLYHREGENLSQGGVGFLVHRSLVNNVTQVESVSARVAY
FT                 LILRISERYSLKVIQVYAPTSTHPDDEVEAMYEDVSRAIHASKTHFTVVMG
FT                 DFNARLGKRDGDEQKVGPFGFGQRNRRGHLLADFLERENLFMMNSFFKKKP
FT                 QRKWTWISPSGSSKSEIDFILTDKRHIFNDVSVINRVKTGSDHRMVRGTLN
FT                 INIKLERSRLMKSTLRPTPVQIHGSENFQLELENRFADLELCKSVDDFNTR
FT                 VVRIVHELGSKFFKTPSSGKPQELSDHTLGLMKERRELCIRSPSSMFKYRQ
FT                 LNKQISCSRRRDLRAQNARRVKNIIERNQGSKVFTRNQSVGQSQLTRLKAE
FT                 SGAIVSSKPEVLREIERYYGHLYTSLKPLVPNLVNDKRAKLTRRYTEDFPD
FT                 VSLYEIRGALNQLKNNKAPGDDGITAELLKAGGKPLLVTLQKLFDTVISSG
FT                 TVPEDWSRSVVVLFFKKGDRALLKNYRPISLLSHIYKLFSRVLTNRIARRL
FT                 DDFQPPEQAGFRKGYSTMDHIHTLRQVIQKTEEYNLPLCVAYVDYEKAFDS
FT                 IETWAVLESLQRCQIDYRYIEVLKCVYKAATMSVRVHDGKTAPIPLQRGVR
FT                 QGDVISPKLFNAALEDVFKLIEWKRHGININGEHLTHLRFADDIVILAESL
FT                 EELSTMLGDLHSASQRVGLKMNMDKTKIMSNVHVTPMPVVVEGVPLEVVDE
FT                 YIYLGQVIRMGKSNFQREVTRRIQLGWAAFGKLQNIFSSSIPQCLKTKTFN
FT                 QCVLPVLTYGAETWSFTASLIHRLKVAQRAMERAMLGISLRDKIRNDEIRR
FT                 RTRVTDIALKICKLKWQWAGHIVRRADNRWGRKVLEWRPRLGKRSTGRPPT
FT                 RWTDDLKKTAGIRWIQRAQDRTEWRELGEAYVQQWTLKG"
XX
SQ   Sequence 3169 BP; 902 A; 730 C; 836 G; 701 T; 0 other;
     gccgtgtggt gccggcgtta gaatagcacc actcccactc ttcccgtgga gatcgtagga        60
     ggcgatcgag ggataattac cagaagatgg gcagcagcgt cttcctgtgc aacaaaaata       120
     actactgcgg tcaccaacac gcagtgccaa gcgtggtgac tatggcaata accccctatg       180
     aaaggcacaa atacaccccg gcccccagtc cccggcggcc ccgctattcc tggctacgac       240
     agcggccttg gtcacggcgg ggcagggggt gctaagaatc tccggcagag attcggctgt       300
     caaaaatcaa aacgacctct gcacctggca acatacaaca ccaggaccct gagaaccgac       360
     gagaagataa aagagctgga ggaagagata ggcaagttaa agtggaacat cataggactt       420
     tccgaagtcc gaagacaggg ggaggacacg gtaattctta agtctggtaa cttgctctat       480
     caccgggagg gcgaaaatct gtcccaaggt ggtgtcgggt ttctcgttca caggtccctc       540
     gtcaacaacg tgacacaagt cgaaagtgtg tcagcaaggg tagcgtacct tatactcaga       600
     atatcggaac ggtattcgct gaaggtcata caggtatatg ctccgacttc gacacaccca       660
     gacgatgagg ttgaggctat gtatgaggac gtcagtagag ccatacatgc ctcaaagact       720
     catttcacgg tagtgatggg ggattttaac gcaagactgg gcaagcgaga cggcgacgag       780
     cagaaagtag ggccctttgg atttgggcaa cggaaccgcc gaggtcactt gcttgctgac       840
     tttttggaga gggagaacct ctttatgatg aactccttct tcaaaaagaa accacagcgc       900
     aagtggactt ggataagccc tagtggctcc tctaaaagcg agatagactt catcctgaca       960
     gacaagaggc acatatttaa cgatgtctca gtgatcaata gggttaaaac cggtagcgat      1020
     caccggatgg taagaggcac gttaaatatc aatattaagc tggaacggtc acgcttgatg      1080
     aagtctacac tccgaccgac acctgtccaa atccatggct ccgagaactt tcagctggag      1140
     ttggaaaatc gtttcgcgga cctagaatta tgcaagtctg tggatgattt caacacgagg      1200
     gtggtacgaa tcgtccatga gttgggatcc aagtttttta agaccccctc cagtggtaaa      1260
     cctcaagagc tctctgatca tacacttggt cttatgaaag aaaggcgtga actgtgtata      1320
     cggtccccgt cttcaatgtt taaatacagg cagctcaata aacagatctc ttgtagcaga      1380
     cgacgtgatc tgcgtgctca gaatgcaagg cgcgtcaaga acataatcga gcggaaccaa      1440
     ggctccaagg tgttcacaag gaatcagagt gttgggcaaa gccagttaac gaggttgaag      1500
     gcggagtctg gtgctatagt ttcgtctaag cctgaagttc tgagagaaat tgagaggtac      1560
     tacggacatt tatatacatc tttgaaacct ctcgttccca atttggtgaa tgacaaaaga      1620
     gccaaattga cccgacgcta taccgaagat tttccggacg tcagcctgta cgaaattaga      1680
     ggagccctta atcagcttaa gaacaacaaa gcaccaggtg atgacggtat cacagcagag      1740
     ctactaaaag ctggagggaa acccctccta gtaacgctac aaaaattatt tgataccgtc      1800
     atcagtagcg gaactgttcc ggaagattgg agcaggagcg tggttgtgtt gttcttcaaa      1860
     aagggcgata gagctctttt gaagaactac agaccgatct cgcttttgag tcacatctat      1920
     aagctttttt caagggttct cactaatcgt atcgcgcgca gactagacga cttccagcct      1980
     cccgaacaag ccggtttccg aaaaggctac agtaccatgg accacataca tacactgcga      2040
     caggtcatac agaagaccga ggagtacaat ctgccgctat gtgttgcgta tgtggactat      2100
     gagaaagcct tcgattctat cgagacctgg gcggtgctag agtctctcca acgatgccag      2160
     attgactatc gatacatcga ggtattgaag tgtgtataca aagccgcgac catgtcagtc      2220
     cgtgtccacg atggaaaaac agcgcctatt ccactgcagc gcggagtgcg acagggggat      2280
     gtaatatccc cgaaactgtt caatgctgca ttggaagacg tgtttaagct gattgagtgg      2340
     aagaggcatg gtattaacat caacggcgaa cacttaacac accttcgatt tgccgatgat      2400
     atagtaatct tggcagagtc gctggaggaa ctcagtacta tgctagggga cctccatagc      2460
     gcctcacaac gggtgggtct taagatgaac atggacaaga caaaaattat gtctaatgtc      2520
     catgttacac ccatgccggt cgttgttgaa ggcgtacctc tggaagttgt tgacgagtac      2580
     atttacctgg gacaagtgat ccgaatgggt aagtccaact ttcagagaga ggtcactcgt      2640
     agaatccaac tcggctgggc agcgtttggg aaactacaaa atatcttctc gtctagtatc      2700
     cctcagtgcc tgaagacaaa aactttcaac cagtgtgtgt tgccagtgtt aacatatggc      2760
     gctgagacgt ggtccttcac tgcaagcctt atccacaggc tcaaagtggc tcagcgagcg      2820
     atggagaggg ctatgcttgg tatttctcta cgcgacaaaa ttcgtaatga tgaaatccgt      2880
     agacgaacgc gggttaccga catagctctc aaaatttgca agctgaagtg gcaatgggca      2940
     ggccatattg tcaggagggc cgacaaccga tggggaagaa aggtcctcga atggcgacca      3000
     cgtctcggca aaaggagcac aggccgccct ccaaccaggt ggaccgacga ccttaaaaag      3060
     acagcgggaa tccgctggat tcaaagggcg caggaccgga cggagtggcg agaattaggg      3120
     gaggcctatg tccaacagtg gacgttaaaa ggctgatgga tggatggat                  3169
//
ID   RTE-2_LMi   repbase;    DNA;    INV; 3285 BP.
XX
AC   .
XX
DT   25-FEB-2014 (Rel. 19.12, Created)
DT   25-FEB-2014 (Rel. 19.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3285
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3463-3463 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           314..3271
FT                 /product="RTE-2_LMi_1p"
FT                 /translation="MMASSWVKYSGGKIVPHSDLRAGTTQEDVVIKKNKTG
FT                 ILRVGAWNVLTLNRVGKLENLKREMDRLKLDMVGISEVRWQDEQDFWSGEY
FT                 RVINTKSVGGNAGVGLIMNKKIGMRVSYYEQHSERIIVVKIDTKPTPTTVV
FT                 QVYMPTSTADDEDIEKMYEEIKEIIQKVKGDENLIVMGDWNSVVGKGREGN
FT                 VVGEYGLGKRNERGDRLVEFCAEHNLMITNTWFNHHERRLYTWKRPGDTGR
FT                 YQIDFIMVRNRFRNQVLNCKTYPGADIDSDHNLLVMNCRLKLKRLQKGRKV
FT                 RRWNLDKLKEPEVVESFRGSIRQGLAETGESNTVEEEWVALRDRVVKAAED
FT                 HIGRRTRPNRNPWITQDILNLIDERRKYKNSASETGKREYKRLKNEIDRKC
FT                 RLAKQEWLEDKCRTVEECITRGKIDTAYRKIKEIFGDKKSSCMNIKNSDGK
FT                 PVLSKEGKAELWKEYIEGLYKGNKLEGSILEMEDEVEEDEIGDMILREEFD
FT                 RALKDLSRNKAPGVDDIPSELLMSLGEPVVKKLYHLVCKMYETGEIPSDFK
FT                 KNIVIPIPKKASADKCENYRTISLISHGCKILTRIIYRRMEKLVESDLGED
FT                 QFGFRRNVGTREAILTLRLILEDRLRKGKPTFLAFVDLEKAFDNVDWNTLF
FT                 QILKVSGVKYRERRVIFNLYKNQTAVIRVEGQERDAEVGKGVRQGCSLSPM
FT                 LFNLYIEQAVKEWKEKFGEGIKVQGEEIKTLRFADDIVILSETAKDLEEQL
FT                 NGMDSVLKGRYKMNINKSKTKVMECNVRKSGDAEGIRLGNETIKVVDEFCY
FT                 LGSKITSDGRSKEDIKCRMAMGRKAFLKKRNLLTSNINLNVRKSFLKAFVW
FT                 SVALYGSETWTIRSSDKKMIEAFEMWCYRRMMKIRWVDHVTNEEVLNRIGE
FT                 KRSFWHILTKRRDRLVGHILRHQGIVNLALEGSVWGKNRRGRPRDEYSKQI
FT                 QKDVGCRTYSQMKRLAQDRVAWRAASNQSAD"
XX
SQ   Sequence 3285 BP; 1172 A; 480 C; 917 G; 715 T; 1 other;
     ccacccccat gaaccacaga cattgccgag gtggggtggc ttgcgtgcct caacgatgca        60
     gatagccgta ccgtaggtgc aaccacagcg gaggggtatc tgtggagagg ccagacaaac       120
     gtgtggttcc tgaagagggg cagcagcctt ttcagtagtt acaggggcaa cagtctggat       180
     gattgactga gctggccttg taacatcagc taacgtggct ttgccacgca gttactgcga       240
     acggctgaaa gcaaggggaa actacagtcg ttacttctcc cgaggacatg cagctctact       300
     gtatgactat acgatgatgg cgtcttcttg ggtaaaatat tccggaggta aaatagtccc       360
     ccattcggat ctccgggcgg ggactactca ggaggatgtc gtcatcaaga aaaacaaaac       420
     aggcattcta cgggtcggag cgtggaatgt tctaaccctt aatcgcgtag gtaagctaga       480
     aaatttgaaa agagaaatgg ataggttaaa gttagatatg gtagggatta gtgaagttcg       540
     gtggcaggat gaacaggatt tctggtcagg tgagtacagg gttatcaata caaaatcagt       600
     tggtggtaac gcaggagtag gtctgataat gaataagaaa ataggaatgc gggtaagtta       660
     ctatgaacag catagtgaac gcattatcgt agtaaagata gacacgaagc caacaccgac       720
     cacagtagtg caagtttata tgccaactag cacggccgat gatgaggata tcgaaaaaat       780
     gtatgaggag ataaaagaaa tcattcagaa agttaaggga gacgaaaact tgattgtgat       840
     gggggactgg aactcggtag taggaaaggg aagagaagga aatgtagtag gtgaatatgg       900
     actgggaaaa aggaatgaaa gaggagatcg cttggtagaa ttttgcgcag agcacaattt       960
     aatgatcacc aacacttggt ttaatcatca tgaaagaagg ctgtatacgt ggaagagacc      1020
     aggagacact ggaaggtacc agattgactt tataatggta aggaatagat ttagaaacca      1080
     ggttctaaac tgtaagacat atccaggggc agatatagac tctgaccata acttattggt      1140
     tatgaactgc agattaaaac ttaagagact gcagaaaggt agaaaggtta ggagatggaa      1200
     cctggacaaa ttgaaggaac cagaggtggt tgagagtttc agagggagca ttaggcaagg      1260
     attggctgaa acgggggaaa gtaatacagt agaagaagaa tgggtagctc tgagagatag      1320
     ggtagtgaag gctgcagagg accatatagg cagaaggaca aggcctaata gaaatccctg      1380
     gataacacag gatatactga acttaattga tgagaggaga aaatataaaa attcagcaag      1440
     tgaaacagga aaaagggagt acaaacgtct gaaaaatgag attgacagga agtgcagact      1500
     ggctaagcag gagtggctag aggacaaatg cagaaccgta gaagaatgca taactagggg      1560
     aaagatagat accgcctaca ggaaaataaa agagatattt ggagacaaga aaagcagctg      1620
     tatgaatatc aagaactcag acggaaaacc agtactaagc aaagagggga aagctgaact      1680
     gtggaaggaa tatatagagg gcctatacaa aggaaataaa cttgaaggca gtattctaga      1740
     aatggaagac gaagtggagg aagatgagat aggagatatg atactgcgag aagaatttga      1800
     cagagcgctg aaggacttga gtcgaaacaa ggcccctgga gtagatgata ttccgtctga      1860
     actgctgatg tcgttaggag agccagtcgt gaaaaaattg tatcacctgg tatgcaagat      1920
     gtatgagaca ggggaaatac cctccgactt caagaagaat atcgtaattc caattccaaa      1980
     gaaagcaagt gcagacaagt gtgaaaatta cagaactatc agtttaataa gtcatggttg      2040
     caaaatacta acacgaatta tttacagacg aatggaaaaa cttgtggaat ccgacctcgg      2100
     ggaagatcag tttggattta ggagaaatgt aggaacacgg gaggcaatac tcacattacg      2160
     acttatctta gaagataggc taaggaaagg naaacctacg tttttagcgt ttgtcgattt      2220
     ggagaaagct tttgacaatg tcgactggaa tacactcttc caaattctga aggtatcagg      2280
     ggtaaaatat agggagcgaa gagttatatt caacctatac aaaaaccaga cagcggttat      2340
     tagagtcgaa gggcaagaaa gggacgcaga ggttgggaag ggagtaagac agggttgtag      2400
     cctttcccca atgttgttca atctgtacat tgagcaggca gtgaaggaat ggaaggagaa      2460
     atttggagag ggcattaaag tgcagggaga agaaataaaa acattgcggt ttgccgatga      2520
     catagtaatt ctgtcagaga ccgcaaaaga tctggaagag caattgaatg ggatggacag      2580
     tgtcttgaaa ggaagatata agatgaacat taacaagagt aaaacgaagg taatggaatg      2640
     caatgtcaga aaatcaggcg atgctgaagg aattagatta ggtaatgaga caataaaagt      2700
     agtagatgaa ttttgttatt tgggtagcaa gataacttct gatggccgaa gtaaagaaga      2760
     tataaaatgc agaatggcta tgggaagaaa agcgtttcta aagaagcgaa acttgttaac      2820
     atccaatatt aatttaaatg ttaggaagtc ctttctgaaa gcatttgtct ggagtgtagc      2880
     attgtatggg agtgaaacgt ggacgataag gagttcagat aaaaagatga tagaagcttt      2940
     tgaaatgtgg tgctacagac gaatgatgaa aattagatgg gtagatcacg taactaatga      3000
     ggaggtgctt aaccgaatcg gggagaaaag gagtttctgg catatcctga ctaagagaag      3060
     ggatagattg gttggacaca ttctgagaca tcaaggaatt gtcaacttag cattagaagg      3120
     aagcgtgtgg ggtaaaaatc gtagagggag accgagggac gaatatagta agcagattca      3180
     aaaggatgta ggttgccgaa cgtattctca gatgaagaga cttgcacagg acagggtagc      3240
     gtggagagct gcatcaaacc agtctgcgga ctgaagacca caaca                      3285
//
ID   RTE-2_NVi   repbase;    DNA;    INV; 4937 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4937
RA   Bao W. and Jurka J.;
RT   "RTE-like non-LTR retrotransposons from the parasitic wasp
RT   Nasonia vitripennis.";
RL   Repbase Reports 9(4), 798-798 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(463..687,614..1027,984..1751)
FT                 /product="RTE-2_NVi_1p"
FT                 /translation="MEAKNKLKGTDLFIDHDTTWIERRNREKLNGLAKEWR
FT                 SEGKPVKVGRNKLTVGDEEYIWNERKDQLFRKRGRRQERWETRSIYGTRER
FT                 TSFFEKEEEGKNKGKKKGRGKEKEKESLKVLSWNVAGLKGVDEEGWGFLRE
FT                 FDVICLQETWTGGGEEKSIRKRLQGYEVEVREAKKGGSRGRLKGGMIMAVR
FT                 KRSKEDKVEWMEGEIRRIYRREDSGWKGRSGEFIGGKIRIKGEEWWIGSTY
FT                 MRDEKKKNYEEIEEMLERAGGGGRILWCGDLNARTGTEGGSLDEEGNEERR
FT                 ESKDRTVNKEGEELLDRLKEMGLSILNGNIEGDEEGEITYVGGMGCSVIDY
FT                 GIVNEEGRRKIKRMKVKDRIESDHGALEIEIDTERKVEVVKEETSRALWTE
FT                 KAIREYRSWLEKGGEAKSWREMKVKIRNAIQTKRGVRKKNEKNRWWDEECR
FT                 KKRAEMKRAKKGLEEMGSTGTHR*"
FT   CDS           join(1794..2264,2194..2556,2445..3677,3958..4734)
FT                 /product="RTE-2_NVi_2p"
FT                 /translation="TEVREIIRKLKEKKAPGDDGIQNEAWKYGEENLVEEL
FT                 KEILGKIWKGEGLPEEWRKGTVKPIFKKGDKGECKNYRGITLMDTGYKIYA
FT                 ELIRGRMEKKLEEENRLSDTQMGFRKGRGTIDAIYVVSKAVEQELRKKGGK
FT                 VYACFMLRRHESSFRQNKGRKVGRFTPALCFADMKAAFDKINREEIWRMMK
FT                 RLGVSRKIRERVEEIYEKTECEVNIGERKVGSFVTQKGVRQGCPLSPLLFN
FT                 VAMADLEVEMGKIQEGGIILGRKKNYGRFHTRMMWCSCGNGRPGSRDGEDT
FT                 GRRNHSRKKKKLWSISYADDVVLLATNASGLKQMLKRFKGFIRRKGLELNT
FT                 EKTKIMIFRNGGRRKREEKFEWNGEEIEVVKKFEYLGYTMKENGKEXEQIK
FT                 KVKGKAIAVLGTVWGIGEAIFKESWKMRMKLFDALVQSVMEYGAEIWGWKG
FT                 QEELEKIQRRYMKWVLKLERTTPAHIIHWETKRFKLETRARKRAVRYEGKL
FT                 RKAKENSLLRECWSLLKKEGEKEIRRGRGKDVRRSELEKCGISVEEYNRRV
FT                 EEGEGVEEEIERINKDTQWQKWREEIRGSKYAEEVRELLMEQGEIPEYLGE
FT                 TGEKRRGALEKIARFRLGSETRGNHYWRKEEDRKCRMCGREEETLRHVMEE
FT                 CEETKISGKKWKEICGGKRSQIGNLNSIIWKRKNKEKVTEKSQIVEMTHFE
FT                 RRMEREMREIKEEVKEWKVKMQLERGKREAAERKLMDLEGDVEILKGKVRE
FT                 ERREREKMQRAVEEMRAKIKKVEEKGRREKERKGSEEVSXVKVKSEVRLVS
FT                 ASKRKRMEEGRSKVWERGVIIHKGANWDENKVLQDWLDEFLEGTNWELEET
FT                 SNKDTKKIIFESREEMEEVWKRREEINEEDKVRMEQWMNREERRAKREAIL
FT                 ERERRMEEAKRRGELMRRGNIRVRVEGETYEWIEEEGRIKKRR*"
XX
SQ   Sequence 4937 BP; 2120 A; 461 C; 1647 G; 698 T; 11 other;
     aatgaaaagg tggaagaggt aaggcggcta atagaagaag agaaaaggga aagaatggaa        60
     ctagaggaga gaatgaagag ggatgcggag gaggagagaa ggaaaagaaa agaactcgaa       120
     agaaaaatgg aagaaagggt aaaagtgttg gaggataagg cagaaggaga gaagatagaa       180
     aaggcggaat caggaagtaa agggaaagag gaaaaggaaa tggaagataa ataactgaag       240
     gagctagaat ggaggatcga ggaaggagaa agagaaagga aacggaacaa cgtggtatta       300
     acagggctaa aagaggagag gtgggacaag gtgaagattg aaggctggtt taaagaaaag       360
     ctagaaatca cggtgaaggt gaagaggaca tggctgatta gaggcaaggc cacaaacaga       420
     attagggtgg aatgcgtaga cagagaagag aaggaaaaga taatggaggc taagaataaa       480
     ctaaagggca cggacttgtt catagatcac gatacaacct ggatagagag gagaaataga       540
     gagaagctga acgggctggc taaagagtgg agaagcgaag ggaaaccagt gaaagtagga       600
     aggaacaaac tgacggtggg agacgaggag tatatatgga acgagagaaa ggaccagctt       660
     tttcgaaaaa gaggaagaag gcaagaataa gggaaagaag aaaggccgag gaaaagagaa       720
     agaaaaagaa agtctgaagg tgttgagctg gaacgtggca ggacttaaag gagtggacga       780
     ggaaggatgg ggatttctac gggaattcga cgtcatttgc ctgcaggaga cgtggacagg       840
     aggcggagaa gagaaaagca taaggaaaag gctacaggga tacgaggtag aggtaagaga       900
     ggcaaagaag gggggaagca gaggtaggct aaagggagga atgataatgg cagtcaggaa       960
     aagaagtaaa gaggataaag tagagtggat ggaaggggag atcaggagaa tttataggag      1020
     ggaagattag gataaaagga gaggaatggt ggataggctc gacatatatg agggatgaga      1080
     aaaagaagaa ctatgaagag atagaggaaa tgttagaaag ggcaggtgga ggaggaagga      1140
     tactttggtg cggagaccta aatgcaagga caggaacaga gggtggaagt ctggatgagg      1200
     agggaaatga ggaaaggaga gaatctaagg atagaacagt aaataaagaa ggggaagagt      1260
     tgctagacag attaaaagag atggggctgt ccattttaaa cggtaacata gaaggggatg      1320
     aggaagggga aataacatac gtgggaggaa tgggatgttc agtaatagat tacgggatag      1380
     taaatgagga agggaggaga aagataaaaa ggatgaaggt aaaagataga atagaatcgg      1440
     accatggggc gcttgagata gagatagaca cagagagaaa agtggaggtg gtaaaagagg      1500
     aaactagtag agcgttatgg acagagaagg ccattagaga atacaggagt tggctagaaa      1560
     agggaggaga agcgaaatca tggagagaaa tgaaagtgaa aataaggaac gcgatacaaa      1620
     ccaaaagagg ggtgagaaag aagaatgaaa agaatagatg gtgggatgaa gaatgcagaa      1680
     aaaagagggc agaaatgaag agggcaaaaa agggattaga agagatggga tcaacaggta      1740
     cacacaggta aagagagaat taaagaacat gtagtgtrga acatgtagag taaacagaag      1800
     tgagggaaat aatcagaaag ttgaaggaga aaaaggcacc aggagatgat ggaatacaga      1860
     acgaagcatg gaaatatgga gaagagaatc tagtagagga actgaaggag atactgggaa      1920
     agatatggaa aggagaggga ctaccagaag aatggagaaa agggacggtg aaaccaatct      1980
     ttaaaaaagg agataaggga gaatgtaaaa actacagagg gataacccta atggatacag      2040
     gatataaaat atatgcagaa ctgataagag ggagaatgga gaagaagcta gaagaagaga      2100
     acagactgag cgacacgcag atggggttta gaaaagggag agggacgata gatgcaatat      2160
     acgtggtgag taaggcagta gagcaagagc tgaggaagaa aggtgggaag gtttacgcct      2220
     gctttatgct tcgcagacat gaaagcagct ttcgacaaaa taaataggga ggaaatatgg      2280
     agaatgatga agagactggg agtgagcagg aagattagag aaagggttga agagatttat      2340
     gaaaagacgg aatgcgaagt gaacatagga gaaagaaaag taggcagctt cgtcacgcaa      2400
     aaaggggtaa gacagggatg cccacttagt ccactacttt ttaatgtggc aatggcagac      2460
     ctggaagtag agatggggaa gatacaggaa ggcggaatca ttctaggaag aaaaaaaaat      2520
     tatggtcgat ttcatacgcg gatgatgtgg tgctcttagc aacgaacgcg agtggactaa      2580
     agcaaatgct gaaaagattt aagggattca taagaagaaa gggtctagaa ctgaatacag      2640
     agaaaacaaa gattatgata ttcagaaacg gaggaagaag gaagagagag gagaagttcg      2700
     agtggaatgg agaagagata gaggtggtga agaaatttga atacctaggc tacactatga      2760
     aagagaacgg raaggaagak gaacaaatca agaaagtgaa aggaaaggca atcgccgtgt      2820
     taggcacagt atgggggata ggggaggcaa tcttcaaaga gagctggaag atgagaatga      2880
     aactcttcga cgcactagtt cagagcgtaa tggagtacgg agcggagatt tggggttgga      2940
     aagggcagga agaattggag aaaatacaga gaagatacat gaaatgggta ctgaagctgg      3000
     agagaacaac tccagcacac attatacatt gggagacgaa acgcttcaaa ctggaaacaa      3060
     gagcaagaaa aagggcagtt agatacgagg gaaaattaag gaaggctaaa gaaaactcct      3120
     tgctaagaga atgctggagc ctactgaaaa aagagggaga aaaagagata cggagaggaa      3180
     gagggaagga tgtaagaagg agcgaattag aaaaatgcgg tatatcggtg gaagaataca      3240
     acaggagagt agaagaggga gaaggggtag aagaggagat tgaaaggata aacaaggaca      3300
     cacaatggca aaagtggaga gaggaaataa gagggtcgaa atatgcagaa gaggtaagag      3360
     aactactgat ggaacaagga gaaataccgg aatatctagg agagacagga gaaaagagga      3420
     gaggggcact ggaaaaaata gcaagattta gactaggaag cgaaacgaga ggcaaccact      3480
     actggaggaa ggaagaagac aggaaatgca gaatgtgcgg gagagaagaa gagacactga      3540
     gacacgtaat ggaagaatgt gaggagacga agatatcagg gaaaaaatgg aaagaaatat      3600
     gcggaggcaa aagaagtcaa atagggaacc ttaatagtat tatatggaaa cggaaaaaca      3660
     aagaaaaagt aacagaataa aggagaaaga agaataagta aagggaagga agacaaagtg      3720
     tgccgggaga agtttcaaaa agcgcgcgsa aaccacctag ggaactccga ggaaaagtcc      3780
     ctaggagkgt agagagaaag aaactaggaa cgtcggcaag gaagaaagga gtagaaagaa      3840
     ggaacggacg aaaaagaaaa gggaacgaat agaacagaag cgaaagcacg tgtagaaaac      3900
     agcagaaaga ggttagaaag aagagatcag tcaactagat aagagataaa aaagtgaaaa      3960
     agccagatag tggagatgac tcacttcgag agaagaatgg agagggagat gagagaaata      4020
     aaagaggagg tgaaggagtg gaaggtgaag atgcaactgg agaggggaaa aagagaagcg      4080
     gcggagagga aattgatgga cctagaagga gacgtggaga tcctgaaggg aaaagtgaga      4140
     gaagagagaa gagaaaggga gaagatgcaa agggcagttg aagagatgag ggctaagata      4200
     aagaaggtgg aggaaaaggg gagacgcgag aaagagagaa agggatcrga agaggtaagc      4260
     aawgtgaaag tgaaaagtga ggttaggttg gtgtcagcaa gcaaaagaaa gagaatggaa      4320
     gagggaagaa gcaaggtgtg ggagagagga gtaataatac acaagggagc aaactgggac      4380
     gagaacaagg tactacagga ctggctggac gaatttttag aagggacaaa ctgggaactg      4440
     gaggagacat cmaacaaaga cacaaagaaa attattttcg aatcaagaga agagatggag      4500
     gaagtttgga aaaggagaga ggagattaac gaagaggaca aagtgagaat ggagcagtgg      4560
     atgaaccggg aagagagaag ggcaaaaaga gaggcaattt tagaaaggga gagaagaatg      4620
     gaggaggcaa agagaagggg tgaactaatg agaagaggga acatcagggt gagagtagaa      4680
     ggagagacat acgaatggat agaagaagag ggcaggataa agaagcggag atgagggata      4740
     aggaggagga gagaagggca agaaggaaga aggaagacta grgagaagga aactgcagtg      4800
     tactatgtat aagaaaaaaa aagagaaaaa aaagaraaaa aaagatgtac ggggakaata      4860
     tttttgtata ctattgtaaa tacgagatgt ataaaaacaa taaaactaat actattacta      4920
     caatcatatt attatat                                                     4937
//
ID   RTE-2_PPo   repbase;    DNA;    INV; 417 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-417
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3153-3153 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..395
FT                 /product="RTE-2_PPo_1p"
FT                 /translation="XNKKDEERLQVFERKILRRIYGAVLIGDQWRSRYNHE
FT                 LYQMYKEPNITKVIKIGRLRWAGHVARMDDCRVPKRLLENKPDGRRARGRP
FT                 KLRWLDDVERDLKNIGVKGWKQKAQNRQNWRSLLDQAQAHPRL"
XX
SQ   Sequence 417 BP; 130 A; 88 C; 115 G; 83 T; 1 other;
     ttaasaataa gaaagatgag gaacgcttac aagtgtttga gcgtaagata ctgcgtcgca        60
     tttatggtgc tgttctcatt ggtgatcaat ggcgatcacg atacaaccac gagctgtacc       120
     aaatgtataa agagccaaac atcaccaagg tcatcaaaat tggacgactg cgctgggcag       180
     gacatgttgc ccgcatggat gattgcagag ttcctaaacg cctgttggaa aataagccgg       240
     atggacgtag agcgcgtggt aggccgaaac ttagatggct agacgacgtc gaacgcgatc       300
     ttaagaacat cggcgtcaag ggctggaagc aaaaggccca aaatagacag aattggagaa       360
     gtttactgga ccaggcccag gcccacccgc ggctgtagtg cctcagatga agaagaa          417
//
ID   RTE-2_PXu   repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-350
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3082-3082 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
SQ   Sequence 350 BP; 82 A; 86 C; 123 G; 57 T; 2 other;
     agggcaatga aaagggcaat gctcgagtct ctctgcgwga tcgcatcagg aatgatgtga        60
     tccgcagcag aacsagggta accgacattg cccgaagaat tgcaaacctt aagtggcgat       120
     gggccggcca tattgcccgc agaatggacg gtcgatgggg ccgcaaagtc ctagagtggc       180
     ggccacggac aggtcgacgc agcgtgggca ggcctcccgc aagatggacc gatgacctgg       240
     tcaaggttgc gggagcgtcc tggatgcagg tggcacagga ccggtcatcg tggcgatctt       300
     tgggggaggc ctatgcccag cagtgggcga ctcatggctg acaagagaga                  350
//
ID   RTE-2_SIn   repbase;    DNA;    INV; 3469 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   31-DEC-2011 (Rel. 19.02, Last updated, Version 1)
XX
DE   RTE non-LTR retrotransposon sequence - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3469
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the fire ant genome.";
RL   Repbase Reports 14(2), 477-477 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           244..3081
FT                 /product="RTE-2_SIn_1p"
FT                 /translation="MEKGWYISNGTMEGDWEGEFTYVGARGCSVIDYVIVN
FT                 EDVRDKICKFTVGDRVDSDHSPLEMEVIEEEGRDPGEEEEEEEEIEIIVWD
FT                 EEAREVCAKITEELCKAKESEEKEDDTIEEKWDKIKRIVHKAMIKKKIRKR
FT                 KKVELGDKDWWDRSCTRKKREVKRIYKKWKKGKIGREDYTKEKKNFKELLV
FT                 KKQREKREEEEEELREMKSEAEVRKYINKKRGKRARIINRIGKEVWRKYFK
FT                 DLLEGSEKEERKEDKEKEERQRRRAMMGSGGSLPGVDAGANIMEEEQGEEE
FT                 LQEAEITKALNKMKKRKAAGIDGIPMEAWKYAGKSLWKRMKNLIKQIWKAR
FT                 TIPKDWKKGIVVPLYKRGDKEXVGNYRGISLLCTAYKIYAEVIRNRLEMEV
FT                 EERGIVPTSQAGFRKGRSTMDNIFVLNHVIQRERRKGEKKGKVYMMFADLK
FT                 AAFDKVDRETXWSIMRRKGIKEQLVRRIAKMYEGTEVMVRTEQGYTESFIT
FT                 GKGVRQGCVMSPLLFNLYIAELGEKMEVRNIGGVAIGRLRIWSLAYADDIV
FT                 LIANNRDAMLDMIGTFKRFLTERKLELCPEKTKMLVVNRKRKEEIEKWKWG
FT                 EKMIEEVKSFKYLGXVLNGNGNSKEHIKELCGKGKIVARKVWGLGERICRN
FT                 DFKRRWILFKYLVQSVMSYGVELWGWEEKDNLEKVMMDYVRWIFGLEFCTP
FT                 RYIITRELVMDKLRVGWGIRARRYENRIKEGRAGDIVKECWREKEQYDWKD
FT                 EYGKERERYYNRNGWGIEAREVREIGEYDLEAELIKREREVQRQWENGRIA
FT                 KARYNKRYREIDLKGRMPRYLEVRNIANSSRGNEVRAMIKLRCGNLEHANK
FT                 YWIDEGQWACLFCGKGSDSMDHYVKECEESREWFADLGRVSDRILEEIYSE
FT                 DLGWCKGKIIQKLWKEREKKLKEKKEAEEKESEKESGKKTGK"
XX
SQ   Sequence 3469 BP; 1401 A; 274 C; 1113 G; 677 T; 4 other;
     gagagagaga gagtgaaaat tgtatcagtg tacggagcac aagggggaaa gggtttaaga        60
     gagaaactgg aaaagtttat aggggaagaa gaggaaggta atgtgataat aggaggagac       120
     ttcaatataa gaataggaga attaggtggg aaagatatag gagatatagg agaaggagaa       180
     atagcgaggt atagcaagga caaagtgata ggaaatggag gaaggaattt ggtaggatgg       240
     ataatggaga aagggtggta tatttcgaat gggacgatgg aaggcgattg ggagggagaa       300
     tttacatatg taggggcgag aggatgttcg gttattgatt atgttattgt aaatgaagat       360
     gtacgcgata aaatttgtaa gtttacagta ggggacaggg tggactcaga ccactcgcca       420
     ttggagatgg aggtcataga agaggaagga agagacccag gagaagaaga ggaagaggaa       480
     gaagaaatag aaataatagt atgggacgaa gaagcaagag aggtatgtgc aaaaataacg       540
     gaggaactgt gtaaagcgaa agagtcggaa gaaaaggagg acgatacgat tgaggaaaaa       600
     tgggataaga taaagaggat agtgcacaag gccatgataa agaaaaaaat aagaaagagg       660
     aaaaaggtgg agcttggaga caaggattgg tgggatagaa gctgcacaag aaaaaagaga       720
     gaggtaaaga ggatatacaa gaaatggaag aaaggaaaaa taggaagaga agattatacc       780
     aaggagaaaa agaattttaa ggaactgttg gtgaagaagc agagagaaaa aagggaggaa       840
     gaggaagaag aattaagaga aatgaagagt gaggcagagg tacggaaata tataaacaaa       900
     aagagaggca aaagagcaag gataataaat aggataggga aagaggtatg gaggaaatat       960
     tttaaagacc tgttggaagg ttcggagaaa gaagagagga aggaggataa agagaaagaa      1020
     gagaggcagc ggcggcgtgc gatgatgggt tcgggcggaa gcctgcctgg agtagacgcc      1080
     ggtgcaaata taatggagga ggaacaggga gaggaagaat tacaagaagc ggagattacg      1140
     aaagctctga ataaaatgaa aaagaggaag gctgcgggaa ttgatggaat accgatggag      1200
     gcatggaaat acgctggtaa gagtctatgg aaaaggatga agaatctgat aaaacaaata      1260
     tggaaggcaa gaacgatacc gaaagattgg aaaaaaggta tcgtggtacc cctgtacaag      1320
     agaggggata aggaaanagt aggcaactac agaggaatat ccttgctgtg cacagcatac      1380
     aagatatatg cagaggtaat tagaaatagg ctggagatgg aggtagaaga aaggggtata      1440
     gtgccgacga gtcaagcggg cttcaggaaa ggaagatcaa cgatggacaa tatatttgtt      1500
     ttgaatcacg tgatacaaag ggagaggaga aaaggagaga aaaaaggaaa ggtatatatg      1560
     atgttcgcgg acttgaaggc ggcatttgat aaagtagaca gagagacant gtggagtatt      1620
     atgagaagaa aaggaataaa ggagcagctg gtgaggagaa tagcaaaaat gtacgaggga      1680
     acggaagtca tggtgaggac ggaacaagga tacacggaaa gctttatcac aggaaaagga      1740
     gtgaggcaag gctgtgtaat gagtccactc ctgttcaatt tatatatagc ggaattgggg      1800
     gaaaaaatgg aagttaggaa cataggtggg gtagcaatag gtagacttag gatatggagc      1860
     ttagcgtatg cggacgacat agttttgata gcgaataata gggatgcgat gttggatatg      1920
     ataggtacgt ttaaacgttt tttgacggaa aggaaactgg agttatgccc agaaaaaaca      1980
     aaaatgcttg tagtgaatag gaaaagaaaa gaagaaatcg agaaatggaa atggggagag      2040
     aagatgatag aggaggtaaa aagctttaaa tacttgggtt ntgtgttgaa tgggaatgga      2100
     aatagtaagg aacatattaa agaattatgc ggtaaaggaa aaatagttgc gagaaaggtc      2160
     tggggtttag gtgaaaggat atgtagaaat gattttaaaa gaaggtggat actattcaag      2220
     tacttagtgc aaagtgtaat gtcatatgga gtagaattgt ggggatggga agagaaggat      2280
     aatttagaaa aggtgatgat ggattatgtg agatggattt ttggcttgga attctgtaca      2340
     ccaaggtata ttataacgag ggaactagtg atggataaac taagagtagg atgggggatt      2400
     agagctagga ggtacgagaa tagaatcaaa gagggtaggg caggggatat agtgaaagaa      2460
     tgctggaggg agaaagaaca atacgattgg aaggacgaat acggcaaaga aagggagagg      2520
     tattataata ggaacggatg gggaatagaa gctagggagg taagagagat tggagaatat      2580
     gatttagaag cagaattgat aaaaagagag agggaggtgc agagacaatg ggaaaacgga      2640
     aggatagcta aagcaagata taataagagg tacagggaaa tagacttaaa aggtagaatg      2700
     cctaggtatt tagaggtaag gaatattgca aattcaagca ggggtaatga ggtgagagcg      2760
     atgataaaat taaggtgtgg aaacttagag catgcgaata aatattggat agacgaggga      2820
     caatgggcgt gtttattctg tggtaaagga agcgatagca tggaccatta tgtgaaagaa      2880
     tgcgaggaaa gtagggaatg gtttgcggac ttaggtagag ttagcgacag aattttagaa      2940
     gagatatata gtgaagattt aggttggtgt aaaggaaaaa taattcagaa actatggaaa      3000
     gaaagggaaa agaaactaaa ggaaaagaaa gaagcggaag agaaggagag cgaaaaagag      3060
     agtgggaaga aaacggggaa ataggagata gtaaataaaa acgtgatagg gaagtagatg      3120
     gtaaggtaag atagcattat agcgatagta ttaagtgcga caaggtagta cgtagggtta      3180
     tgtactgtag aataaaggct gtgaacggct gtgagtagga atagtataga caaaaagtag      3240
     aagaaataaa atataaatgt aaatagtaaa aggataggaa acgaaaagag atgtaagagc      3300
     gcggtagagt atagatagga agggcgtaga acgtaagaat agtatagggc gtggacgtaa      3360
     gagtggtata aggtgtggat gaatgagtgg ntaaggaacg attgtaaacc aagtcccctt      3420
     ctcggcaatg taagcttgaa gagaaataaa ttttatatat atatatata                  3469
//
ID   RTE-30_LMi  repbase;    DNA;    INV; 3356 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 20.01, Created)
DT   09-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3356
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 279-279 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(479..775,742..915,909..1148,1152..3287)
FT                 /product="RTE-30_LMi_1p"
FT                 /translation="MTEXNKQKIQILALQEXRFTGSETIDYNDYXIFKSKT
FT                 DKKICKGAALFGXAFTVNKDNQXSNRLMTARIKHTTKHTFINVHAPTNXDN
FT                 KKEPKKTSRXFQKRTQEDFSXILTHKLAKRGYIKKQSATTLTQIHEQEWHE
FT                 AHRVCQQNNQKSTSFERTKDLRNRNVAIPYLQLGEFQIDHVAISYDFQKEI
FT                 HDVQVCRGANIDSDHYLTRVKIKFTPKRKGGKKTPLIPKFDLKKIQEKITE
FT                 VWEKQPTNNWRDFQTKIVQKARELIPLKKKSKYPWWNSNCDNAIEERQRAF
FT                 LNYNCDKSETTQQTFFEVRKQTAKILRQTKRKYLNEQLNSIEEDFRNHNTQ
FT                 DFYKMFANQIKGYTPRNLCFRKENGKLALTNKENCQELAKYFSQLLNCPQP
FT                 NTRFPRLQPEYTNETSLAPTQEEIYSHIKKLKNNKSSGEDGIVAELLKNLG
FT                 PNSLKEITQIIKEIWQTENIPEDWKCALIHPLHKKGERADVNNYRGISLLP
FT                 VTYKILSACLLKRAQEQLEHTISDYQAGFRPNRSCPEQIFNLKAILKIKAI
FT                 WSKPIVCTFVDFKKAYDSIDRQSLFNILEERGLDTKTRKLIEQTLTETKSK
FT                 IKFIDEISEPFLIKTGVRQGDGISPLLFNIVLDKIMKEWEIELRKQNFWKP
FT                 IELGRGKGKLNIPYLAFADDLAIITDSEETAIKQIEILKECAEKVGLQISF
FT                 EKTEFICSKLDIPKLKTNYGEINRVKHFKYLGEVIEPTGLEKIAQNNRLQK
FT                 IKKAFGLVQNIYNKKCLSKGTKIRHYNTVIKPTVTYASETLSLNRKLDLQE
FT                 IKKVERKIIRKILGPRYTQDGYRLQTIETTEKLSNIETDIRKRRMKFYGHL
FT                 HRLPGNRLTKRLLDYVTSLKATIPWVTEVKKDLTKAKIDITNTSDRDTFRR
FT                 KIDKWKFTSETAPKPYRPKWTEERKKAFGEKMKKYWENKKNLKKY"
XX
SQ   Sequence 3356 BP; 1353 A; 669 C; 601 G; 708 T; 25 other;
     ggttcgcctg gcccgggtga tagtacctkg tgagggcccc ttgtcagggt acgatgaaga        60
     cctcaacagc agtgaagaga tgamgatcat cggtacggcg gaactggmgg aagaggcaag       120
     ctttacagag aagataaagc atattcaaaa gtccagacac gtctgwgtgg caaccaccgg       180
     tamtcwggcc aktgtctgtt caccatgtga ggtgwggmtg aacmccaagc cccaggaact       240
     aacaatccct ggttccaacc acccagcata gcatgattcg tacaagtaam atcaatatta       300
     cccaggtggt caatccactc gccctgtggc gacaaccaag ctatcggatt ctggggagct       360
     cgggctcmta cgacagagaa agtcggagtt mcctagtaaa cttccacgaa agtctmatac       420
     atttattggc actttcaaca tccaaacact aatacaaact ggcaagttac ataatcttat       480
     gacagaamtc aacaaacaga aaattcaaat ccttgcactc caagagamta gattcactgg       540
     ttcagaaaca atagactaca atgactacmg tatctttaaa agtaaaacag acaagaaaat       600
     atgcaaagga gctgcattat ttggsawggc ctttactgtg aataaggaca atcaawtcag       660
     taacagactw atgacmgcgc gaatcaagca caccacaaaa catacattta ttaacgtcca       720
     cgcacccacs aacawtgata acaaaaaaga acccaagaag acttctcggk gattttaacg       780
     cacaaattgg caaagagagg atatataaaa aaacagtcgg caactaccct gacacaaatt       840
     cacgaacagg aatggcatga ggctcatcga gtgtgccagc aaaacaacca aaaatcaaca       900
     tcatttgaaa ggacctaaga aacagaaacg tggcgatccc ctaccttcag ctaggggaat       960
     ttcaaataga ccatgttgcg atttcctatg atttccaaaa agaaatacat gacgttcaag      1020
     tctgcagagg ggcaaatata gattctgacc actatcttac cagagtgaaa attaaattca      1080
     ctccaaaaag gaaaggcgga aagaaaaccc cactaattcc caaatttgat ttgaaaaaaa      1140
     tccaagaata aaaaattaca gaagtatggg aaaagcaacc tacaaacaac tggagagatt      1200
     tccaaacaaa aattgtacag aaagcaagag aactgatccc attaaagaaa aaatccaaat      1260
     acccatggtg gaattcaaat tgtgataatg caatagaaga gagacaacgt gccttcctaa      1320
     attacaattg tgacaaatca gaaaccacgc aacagacatt tttcgaagtg agaaaacaaa      1380
     cagctaaaat acttagacaa actaaaagaa aatatcttaa tgaacagcta aactcaattg      1440
     aagaagactt caggaaccac aacacacaag atttttacaa aatgttcgca aatcaaatca      1500
     aaggatacac tccacgaaac ctctgtttca ggaaagagaa tggaaaattg gcactaacta      1560
     acaaagaaaa ttgccaagaa ctagctaaat atttctcaca acttctaaac tgcccacaac      1620
     cgaatacaag attccccaga ttacaaccag aatacacaaa tgaaacttca ctagcgccaa      1680
     ctcaggaaga aatatatagc cacattaaga agctcaaaaa taataagtca tcaggagagg      1740
     atggaattgt agctgaacta ctgaagaacc ttggcccaaa ctccctaaaa gagatcaccc      1800
     aaatcatcaa agaaatttgg cagacagaaa atattccaga ggattggaag tgtgcactaa      1860
     ttcatccatt gcacaaaaag ggggagagag cagacgtaaa caactacaga ggcatttcac      1920
     ttttacctgt gacctataaa attttatccg cgtgtctgct aaagagggca caagaacaac      1980
     tagaacatac aatttcagac taccaagcag gctttcgacc taatagatca tgccctgaac      2040
     agatctttaa ccttaaagct attttaaaaa ttaaagcaat ctggtctaaa ccaatagtgt      2100
     gcacattcgt tgattttaag aaagcatatg actctataga cagacagtct ctatttaaca      2160
     ttctcgaaga acgtggacta gacaccaaaa cccgaaaact aattgaacaa acactgacag      2220
     aaaccaaatc aaaaattaaa ttcatagatg aaatttcgga accgttctta attaaaacag      2280
     gagtaagaca aggagatggg atctcgccac tattattcaa catagtttta gacaaaataa      2340
     tgaaagaatg ggaaatcgaa ctaaggaaac aaaacttctg gaagccaatt gaactaggaa      2400
     gaggtaaagg aaaattgaac atcccttatt tagcgtttgc agatgaccta gcaattataa      2460
     ctgacagtga agaaaccgca ataaaacaaa ttgagatcct caaagaatgt gcagagaagg      2520
     ttggcctgca aatctccttt gagaagactg aatttatttg ctccaaatta gatattccga      2580
     aactcaaaac aaattatggt gaaatcaaca gagtcaaaca ctttaagtat ctcggcgaag      2640
     ttattgaacc aacaggactc gagaaaatag cacaaaacaa ccgattacag aaaatcaaga      2700
     aagcattcgg acttgttcaa aacatatata acaaaaaatg cctgtcaaaa ggaactaaaa      2760
     tcagacacta caacacagtt atcaaaccta cagtcacata tgcaagtgaa acgctctcac      2820
     tgaatagaaa actagattta caagaaatta agaaagtaga gagaaaaatt attaggaaaa      2880
     ttctgggacc acgatacaca caagatggat acagactgca gaccatcgag acaaccgaaa      2940
     aactatcaaa tatcgaaact gacatcagaa agagacgaat gaaattttat ggacacctac      3000
     acagattacc tggaaacagg ttaactaaac gtctactgga ctatgtgaca tcacttaaag      3060
     caacaatacc ctgggtaact gaagttaaga aggatttgac aaaagcaaaa attgacataa      3120
     caaacacatc agacagggat acattcagaa gaaaaattga caagtggaag tttacttcag      3180
     agacggcacc aaaaccatac cgaccaaagt ggaccgaaga aagaaagaag gcctttgggg      3240
     agaaaatgaa gaaatattgg gaaaataaga agaaccttaa gaaatattga taaatcacct      3300
     gcttatcgtt ctcccatggg gacattcgct aataataata ataataataa taataa          3356
//
ID   RTE-31_LMi  repbase;    DNA;    INV; 3288 BP.
XX
AC   .
XX
DT   09-APR-2014 (Rel. 20.01, Created)
DT   09-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3288
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 280-280 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(395..529,517..756,791..967,931..1071,
FT                 1029..2132,2126..3247)
FT                 /product="RTE-31_LMi_1p"
FT                 /translation="MPLNQKATEFSKKSGEKGYEKCPSFRNSFHCQLQNFR
FT                 LHNRFPLAISTRLMAEYPCSPSHAQIKVYTPVNVHAPINQANKTNREETDK
FT                 FWEELEEIIVKIPKKHNVILLGDFNAQWAERENSGTLEWRKTIELCRATNL
FT                 VMKSTAFKHLPRKQKTCVLPKSLFRRVSDRSCDNIQRIIPRNPECQYPENH
FT                 PKKSRMLKVIRNAELHSDHYLSKIKIKFQPRSTRNIPNQRVIPTKKYQKHT
FT                 KPKSMKFDVEKLKHGSNFTDILETKNPENWEQLKQSLVQTAKETILVTKTK
FT                 KHAWWNVDCDEAVRERQNAWQKWNKDKNMENKTRFIEKRKETAKLIRNTKR
FT                 NYDKNQLKQVDHDFKMNNTRNFYKTFKRNLNKYSPPNLCFKDENGKIAHNN
FT                 QENCDILANYFENLLNCECPKSRFNFTQRNTQCQDSPPPTKEEIRDIIKNL
FT                 KNNKAPGEDSIIAELWKYSNNKFLDKLTEIIQNIWCTEEIPKEWKTALIHP
FT                 LHKSGDKTDVNNYRGISLLPVTYKILSKALLARAEQQLDSQIGEYQCGFRK
FT                 SRSCAEQILNLKTVIMYLKRRSKNFVILFVDFRKAYDSVDRKSLFEILNEL
FT                 GTGLDSKTTALIKQTLTNTNSKVKFRGEISRSFEIKTGVRQGDGLSPLLFN
FT                 CVLEKVIREWRVSLRESQINEGVRLGYKRDHLQIDCLAFADDLAIFSDSIE
FT                 TAMRQIELLKEQAEKAGLQISFEKTKFMTNINTAPNIMVTKYGKIERRNKF
FT                 RYLGEVIEQDISEKEAIKARVSKMKTAYYLTKDVYNKKSISINAKLAHYST
FT                 VIRPEALYAAECLTLNKKAMMESLQITERKILRKILGPVKEQTQYRMRHNS
FT                 EIYTXIEKITDVIRKRRIAFYAHIQRMDPNRLTKRLFCYFSKLKMDNTWCK
FT                 EVGRDMDELQISQQDIEKRLPLRKKLKDAKCFQEKPKKKTGAKWTEERREK
FT                 HRKMMREIWRKRKEKQLK"
XX
SQ   Sequence 3288 BP; 1356 A; 584 C; 617 G; 728 T; 3 other;
     ggccgacggc atagactttc aggmckgaca gtcttaagaa agccttattt tggattagct        60
     gaaacattgc tatcccctca gtgaaattaa ttttcaactg gaaggcagat ggaaagtcaa       120
     atacggaaaa ctactccagg tggtatccaa tccactgttg ccactggcag caaagcaagt       180
     cgtcggattc tggagaactt gcaccaacat gctggaaaga gtcggagctt cctggaaaca       240
     ggcagaataa aatcaagtac aaacaaaaga attctttgca acagttaaca taaattcact       300
     tctgcaaaca gggaaactta aacaaagaca gacgccctta ctaaacacaa catactcact       360
     gcagcagtac aagaaacaag atttacagac gagcatgcct ttgaatcaga aggctacaga       420
     attttcaaag aaaagtgggg aaaagggtta tgaaaaatgt ccctcattta ggaacagctt       480
     tcattgtcaa ctgcaaaatt ttagactcca taatagattt ccactcgcct aatggcagaa       540
     tatccatgct ctccttcaca tgcacaaatt aaggtgtaca caccagtcaa cgtccacgca       600
     ccaatcaacc aggccaataa aacaaacaga gaagaaacag ataaattttg ggaagaactg       660
     gaagaaatta tcgtaaaaat tccaaagaaa cataatgtaa tattgctggg agattttaat       720
     gcacagtggg cagagagaga aaattcaggt acattgtagg aaattatcca gctcacaaaa       780
     gaacaaataa gaatggcgaa agactataga actctgcaga gcgactaacc tagtaatgaa       840
     atccactgct ttcaagcatc ttcctagaaa acagaaaaca tgtgtgctcc ccaaatcctt       900
     atttaggaga gtttcagata gatcatgtga caatatccag agaatcatcc caagaaatcc       960
     agaatgttaa aggtaataag aaatgctgag ttacattctg accactatct atctaaaatc      1020
     aaaattaaat tccaaccaag aagtaccaga aacataccaa accaaagagt atgaaatttg      1080
     acgtagaaaa actcaagcat ggaagtaact tcaccgatat actggaaacc aaaaatccag      1140
     aaaattggga acaactgaag caatctcttg ttcaaacagc aaaagaaacc attctagtaa      1200
     cgaaaacaaa aaagcatgca tggtggaatg tggactgtga tgaagcagtc agagaaagac      1260
     aaaatgcatg gcaaaaatgg aataaagata agaatatgga aaacaagaca agatttattg      1320
     aaaagaggaa ggaaacagct aaactaatca gaaacaccaa gagaaattat gataaaaacc      1380
     aattaaaaca ggtagaccat gacttcaaaa tgaataacac cagaaatttc tataagactt      1440
     tcaaaagaaa cttaaataaa tactctccac caaacctttg ctttaaagat gaaaatggga      1500
     aaatagcaca taacaaccaa gaaaactgtg acattttagc aaactatttt gaaaatttac      1560
     taaactgtga atgtccaaaa tcaagattta actttacaca aagaaacaca cagtgccagg      1620
     actcaccgcc tccaacgaaa gaggaaatca gggacatcat caaaaatctc aaaaacaaca      1680
     aagcacctgg agaggactcc ataattgcag agctttggaa atactcaaac aacaaatttc      1740
     ttgacaagct aactgaaatt atacaaaata tttggtgtac agaagagatt cctaaagaat      1800
     ggaagacagc gttgatccac ccactccaca aatctggtga taaaactgat gtgaacaact      1860
     acagaggcat atctcttcta ccagttacgt acaaaatctt atcaaaagca ttactagcta      1920
     gggcagaaca acaactcgac tcacaaattg gagaatatca atgtggtttt agaaagagta      1980
     gatcatgtgc agaacagatt ctcaacttaa agacagtaat aatgtatctg aaaagaagat      2040
     cgaaaaactt tgtaatcttg tttgttgact tcaggaaagc ctatgactcg gttgatagga      2100
     agtcactgtt tgaaatactg aatgaactgg gctagacagt aaaaccacag ctctaattaa      2160
     acaaactcta acaaacacta actctaaagt gaaattcaga ggtgaaatat ccagaagttt      2220
     tgagattaaa actggagtga ggcagggaga tggtctctcc ccactgctct ttaattgtgt      2280
     cctggaaaaa gttataaggg aatggagagt gtcattaaga gaaagccaaa tcaatgaggg      2340
     agttagatta ggttacaaaa gggaccacct acaaatagac tgtttagcat ttgcagatga      2400
     cttagctatt ttttcggatt caatagaaac agccatgaga caaattgaat tgctcaaaga      2460
     acaagctgaa aaagcaggct tacaaatctc ctttgagaaa accaaattta tgacaaacat      2520
     taacacagct ccaaacataa tggtaactaa atatggaaaa attgagagaa gaaataagtt      2580
     caggtatcta ggagaagtaa ttgaacaaga tatttcagag aaagaagcca ttaaagcaag      2640
     agttagtaag atgaaaacag catactacct cactaaggac gtatataata agaagtcgat      2700
     atccatcaat gctaaactgg ctcactactc tacagtaatt cgcccagaag cactctatgc      2760
     agcagaatgt ttgactctga acaaaaaggc aatgatggaa tcactgcaaa ttactgaaag      2820
     aaaaatatta aggaaaatct tggggccagt taaagagcag acacaataca gaatgcgtca      2880
     taatagtgaa atctatacam atattgaaaa aatcactgat gtaattagga aaagaagaat      2940
     agctttctac gctcacatac aaaggatgga tcccaacaga ctgacaaaaa gactgttctg      3000
     ttacttcagt aaattaaaaa tggataatac atggtgcaaa gaagttggaa gggacatgga      3060
     cgagctccaa attagccaac aagatattga gaaaagacta ccactcagaa agaaattaaa      3120
     ggatgccaaa tgtttccagg aaaaaccgaa gaaaaagact ggagccaagt ggaccgaaga      3180
     aagaagagag aaacatcgga aaatgatgag agaaatatgg aggaaaagaa aggagaaaca      3240
     gttgaaataa tcgtagtcca tagtggctca tacgtaaaag aagaagaa                   3288
//
ID   RTE-31_PPo  repbase;    DNA;    INV; 291 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-31_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-291
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3184-3184 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 291 BP; 91 A; 58 C; 86 G; 56 T; 0 other;
     catcgtctcg ctcaaaaacg gaattgttgc aaaccgtcaa aaagagaaat tgcatatttg        60
     gggcatgttt tgcgacatga aggatacgag cttctccaac taattatgat gggcaaagtc       120
     gcaggcagaa gacgcgctgg aaggaaaagg aaatcgtggc tgcgaaacat ccgggagtgg       180
     acgagtatcg ccagcgtcga acaacttttt cgcttggcac aggacaggga gaggttcgct       240
     gagctgacgg ccaacctcca gtaatggaga ggcattagaa gaagaagaga g                291
//
ID   RTE-32_LMi  repbase;    DNA;    INV; 3191 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3191
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 281-281 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(339..1379,1480..2808)
FT                 /product="RTE-32_LMi_1p"
FT                 /translation="KNRKVGGGPAGSSMGRYRTIDXXNYTIFYGEAVKHSF
FT                 GTGFSVKKLVPMVKNFTAVNPRISVLTLSVKNHQLTFVNCHAPTEESXDQV
FT                 KDIFYAELEDVMDSIPKSSCRILIGDFNAKIGKETSFTPTIGLHSLHENSN
FT                 DNGIRLISFATSKGMFISSTNFPHRQVHKGTWVFPDGKTVNQIDHIAINTE
FT                 ARNWITDVRNSRGAECGSDHFLVKSQLRVTLKPNQRSKLKNVARLEIEKVA
FT                 QEETRKELQVEIRNRFSVLPETEDPDVNQQWEEIRXVVTKAAGAVTGKRVA
FT                 RKKKWFNEVCEEVVNRRREARDKWLQSATDQSSKAEFDRVRRETQAVLGEK
FT                 RGSSEIHKNAKGEMLTNEYQIAKRWEEYFSDLLNCEDPTTLFNFPLPQTAD
FT                 PEYLPPTVEEIRKQIKRLKKDRSPGEDGINAEIIQEGGEYLVARIHKLIET
FT                 IWNTENIPEDWRNALICPIHKKNDRMACENYRGIALLNICYKIFSNCLLDR
FT                 IQPLADTIIGEYQGGFRHGRSTVDQIFVLRQIVEKRWEFGEELHMLFVDFR
FT                 KAYDCIHRESMLRCLEEFGFAKKLVSLTKACLMDTTAKVKIGNKVTEAFKI
FT                 KTGLRQGDGLSPVLFNLALEKVMREMASNELRGVQIGDVNIKYLGYADDIV
FT                 LLSGSQEELGEMADILETTARKIGLQINRDKTEYMVLHRRHNGTQEPLPSL
FT                 QTTEGSYRQVREFKYLGAVFRDEPSSKMEIQARLQAGNRCYHGLNALLKTR
FT                 SLSRHFKINNLQNTPTASSTIWMCHLEYNQARSEQTDDI"
XX
SQ   Sequence 3191 BP; 1107 A; 623 C; 781 G; 675 T; 5 other;
     ggtaacctta ccttgtcgtg gtggtgggct tgcgtggtca aatgatcctg agagctatgc        60
     cggcggtagc ttagctactg gtagggcctc ccaaactagc agatcaaggt gatgaccaga       120
     ctaaatgggt taccctgtcc tccaggttgt cggttgggcg tggggctaac aaccccactc       180
     ataaaaccag tcgtgttacg aaasctagag agaagcctcg gatacagaac agacacccaa       240
     tacaacgaac taagcataga aaaggactac gatttggaac atggaatgta cagtcttgta       300
     caaacctggg gcggcaataa ctttagttag agaattagaa aaacagaaaa gtcggtggtg       360
     gccctgcagg aagttcgatg ggaaggtaca ggacaataga cktasaaaat tacacaatat       420
     tctatgggga agcagtcaag cacagttttg gaactggttt cagtgttaaa aaacttgtac       480
     caatggtaaa gaattttacg gcagtgaacc caagaatctc agttctaact ttatcagtga       540
     aaaaccacca acttaccttc gtgaactgtc atgcaccaac agaggaaagt kaagatcaag       600
     taaaggatat attctatgca gagctagaag atgttatgga ttccatccct aaaagcagct       660
     gtagaattct catcggcgat tttaatgcca agattggaaa ggagaccagc tttactccca       720
     caataggcct tcatagtctg catgaaaata gtaacgacaa cggaataagg ctaattagct       780
     ttgctacgtc caagggcatg tttatcagta gcactaactt cccacataga caggtgcaca       840
     aaggaacatg ggtattccca gatggaaaaa cagtcaacca aatagaccac atagcaatta       900
     acacagaagc taggaattgg attacagatg tgagaaattc ccgtggggct gagtgtggtt       960
     ccgaccattt cttggttaaa agtcaactca gagtcaccct gaaaccaaac cagagaagta      1020
     aactaaagaa tgtagcacgt ttagaaatag aaaaagtagc acaggaagaa accagaaagg      1080
     aacttcaagt tgagatcagg aatcgtttct cagtactgcc ggaaacagag gacccagatg      1140
     taaatcagca atgggaagaa attagamatg tggttacaaa ggctgcagga gcagtcactg      1200
     gaaaaagagt ggcgaggaag aagaaatggt tcaatgaggt ctgtgaagag gtggtcaaca      1260
     ggagaagaga agcccgtgac aagtggttac agtcagcaac tgatcagagc agtaaggcag      1320
     aatttgacag agtccgaaga gaaacgcaag cggtattggg agagaaaaga ggaagttcgt      1380
     gatggggtta ttacagaagc agaagagact tccagggaag gaggatgaag aaaatgtaca      1440
     gaaaggtcaa ctatctgagg aaaacaataa acccactgag aaattcataa aaatgccaaa      1500
     ggagagatgc tgacaaatga atatcaaatt gcaaagagat gggaagaata tttcagtgac      1560
     ttgttaaatt gcgaagaccc aacgacactc ttcaacttcc ccctaccaca gacagcagac      1620
     cctgaatacc taccgccaac cgtagaagag atcaggaagc agataaaacg gcttaaaaag      1680
     gacagaagcc caggagaaga tggcatcaat gctgaaataa ttcaggaagg gggtgaatac      1740
     cttgtcgcaa ggatccacaa attaatagag accatttgga acactgaaaa cattccagaa      1800
     gactggagga atgcactaat ctgccccatc cacaagaaga atgaccgaat ggcatgtgaa      1860
     aactaccgtg gtatcgctct gctcaatatt tgttataaga tcttctcaaa ctgtcttcta      1920
     gatcgaatcc aaccgttggc agacaccatc attggagaat atcaaggagg atttcgtcac      1980
     gggagatcca ctgtcgacca aatctttgtc ctacgccaga tcgtagaaaa aaggtgggag      2040
     tttggtgaag aactacacat gctgttcgtc gacttcagaa aagcatatga ttgcattcat      2100
     cgggaaagta tgctgaggtg tctggaagag ttcggttttg ccaagaaatt agtaagcctc      2160
     acgaaggcct gcctcatgga tactacagca aaggtaaaaa ttggaaataa ggtgactgaa      2220
     gcattcaaaa taaaaactgg gctacggcag ggagatggac tatcacctgt tcttttcaat      2280
     ctcgcattag agaaggtaat gcgagagatg gcatctaatg aactcagagg agtccagatc      2340
     ggggatgtga acatcaagta cctcggatat gccgatgata tagtgctact atctgggtca      2400
     caagaagaat taggagaaat ggcggacatt ctggaaacaa cagcgaggaa aattggactt      2460
     caaatcaatc gtgacaagac ggaatacatg gttctacacc gtagacataa tggaactcaa      2520
     gaacctcttc catccttaca gacaactgaa ggttcttatc gtcaagtcag ggagttcaaa      2580
     tatctgggcg cagtattcag agatgaacca tccagtaaaa tggaaataca ggcaagacta      2640
     caggcaggta atcgctgtta ccacggcctt aatgctctcc tcaaaaccag aagtttgtca      2700
     agacatttca aaataaacaa tctacaaaac actcctacag ccagtagtac tatatggatg      2760
     tgccacctgg agtacaacca agcaagatct gaacagactg atgatatttg aaaggaaagt      2820
     ccttcggaag atttttggac cggtttacga taatgagagt gaaaaatgga ggatacgtca      2880
     caatacagag ttatatgata tttacaaaga gccgaacatc gtggctataa tgaagacacg      2940
     acgactccag tgggcagggc atgttgtcga atgcgggaca accgatggcc gaaaactgta      3000
     ctcaacacca agccaaccgg cagaaggccc gtgggaagac ctagaactcg atggagtgac      3060
     tgcgtatcca aagaccttca gagagcggga ctgctgaaga atggcagaaa ggagccgaag      3120
     acaggctgaa gtggaggcaa tctctcaaag cagcgcgcgg tccattgggc ctgatcgcgt      3180
     aaagtaaagt a                                                           3191
//
ID   RTE-32_PPo  repbase;    DNA;    INV; 213 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-32_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-213
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3185-3185 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
SQ   Sequence 213 BP; 72 A; 26 C; 67 G; 48 T; 0 other;
     atatgtggga atggattttg gcgtggaagg gaacggaacg gaagtgtgag ggagaaggca        60
     tgtgagcgac agagagagag gttgaagggc aaaaggtgaa cagacagatc aaacgacgtc       120
     aacggagtag gtagtagttt aaggagttaa taaaagtttt aattgattta tctggcgttt       180
     tacttgacaa tcgaaggatc ccaaccacta cat                                    213
//
ID   RTE-33_LMi  repbase;    DNA;    INV; 3294 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3294
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 282-282 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(482..1933,1929..2033,2123..2263,2304..2579,
FT                 2552..2824,2758..3285)
FT                 /product="RTE-33_LMi_1p"
FT                 /translation="MRIGTWNVRTLLKAGKLEEVKMLMEKSQLDILGICET
FT                 RWGGNGDFMSGDFRIIHSGSARSGRNGVAIILRGKWKNNVLNTYHCSDRII
FT                 MIKIKAQPMDLCVIAVYLPTTNSKDEEVEVVYEQIDDLMKLVKEKDNLIVI
FT                 GDFNASIGEDKKGLWNGKFGLGKMNSRGERLLDFCEQYEMIVTNTCFEMPK
FT                 RRRYTWKSPVDGERYQIYILVKKKFINQIKSSHSYPGYDIDSDHVLVIADY
FT                 NSKFKKYKRTNQHRWCVEKLKEKQVAADMKELTDNLIGNREGWEGFKETVE
FT                 VAAKELVGLRKLEPRKPWMTKEILDLIEERNRLRKKDFDKYKRVKNAITQK
FT                 CRLEKEKWMHDKHKEIQQDLSGGQTDKAYSKIKTMQTKTRTKTNMVKNKNG
FT                 DLLFELEDVCERWKEYIEELYEGEDIANEGEILEEENSVDIDMIGPPISKE
FT                 EFNSALNDLSNGKATGTDNIPAEILKEIGDQQKSTYINFTFKEYYEDGKEP
FT                 PTDLLNSKTVIIPKKEMLWTVKQEKTNLVSDLEKAKAILALRMVLERRIGV
FT                 NRKTYLTFIDLQKAFDMVNLEGQRLIWNLYKRQEAEIEVNGVKKKAKIRRG
FT                 VRQGCPLSPYLFNLFIEKAIEKLKRITKGIKINGERIHCIRFADDIVVLAD
FT                 SVRKWSLCCLSKEMEFMLLKFAKILREFNLKINKKKTKTMVVGKTKEKGKV
FT                 NIKLEDDVLEQVENFCYLGSTITDDNKCITDIKRRIAWQSKLSKIKGIYMY
FT                 HRYKEKNSLAKQAFQNKRNLLTDNHISLESRKKFAKTFVWSVLTYGCEAWT
FT                 LGKAEKKRLEAMEMWIWRRMTKTSWVDRKSNEQVLREVNENRTLLNYIGRR
FT                 KSKMIGHIMRHNQFLKNVFEGKVLGKKPRGRPRATYFNNIKEDMGIKSYEE
FT                 LKRMTMERGTWLNRQGIAFSL"
XX
SQ   Sequence 3294 BP; 1300 A; 478 C; 768 G; 748 T; 0 other;
     gccctagcta agtctggcat tgcttccact acttgtgtca gacttctgct ttcttcgttc        60
     ctatcggcct ctcttggtca actctgctgc ttcgaccccg acggtattag gttgcgaggc       120
     cgagggtgct ttcattttct tttctaacac atggctgtta accgaatggc tcccggtata       180
     aggagaccaa ccttaccaag tgccaacggc cagtaagggg ggatgagcgg taaagaaggg       240
     gcacctcctt gtccagggat gagaaattgt ccctaaaggc ggaggaacca ttaacatggt       300
     caacggcagg aggatgcaga aggcaacggg aaccactgca ttaacgatcc catacaggat       360
     tcccaaatag aaatatggct acgtccaatt caaaattttc cggagtttca attcccccat       420
     tcggatctcc gagggaaatg tcttgagcaa ggctgtaagg agtaaaggaa taaaagaaca       480
     gatgagaatt ggaacatgga atgtcagaac cctattaaaa gctgggaaac tagaagaggt       540
     taagatgctg atggaaaagt cacagctgga catattagga atctgtgaaa ctagatgggg       600
     cggtaacggt gattttatgt caggggattt caggatcatt cacagtggta gtgctcgatc       660
     aggaagaaat ggcgtcgcta taattttaag aggaaaatgg aagaacaacg tgttgaacac       720
     ataccactgc agtgatagga taattatgat taaaattaaa gcacaaccta tggatttatg       780
     tgtgattgca gtttacctac caacaacaaa tagtaaggat gaggaagtag aagtagtata       840
     tgagcaaatt gatgacctaa tgaaactggt taaagagaag gacaacctta tcgtaattgg       900
     tgatttcaat gcatcgattg gtgaagataa aaaaggatta tggaatggca agttcgggct       960
     aggaaaaatg aattctagag gagaaaggtt gctagatttc tgtgaacagt acgagatgat      1020
     agtcaccaac acgtgttttg aaatgcccaa gagaagaaga tatacgtgga aaagtccagt      1080
     agatggcgaa aggtatcaga tatatatcct agtcaagaag aaatttatta atcaaataaa      1140
     gtctagccac tcataccctg gatatgatat agacagtgac catgttctag tgatagcaga      1200
     ctataacagc aaatttaaga aatataaaag aactaaccaa cacagatggt gtgtagaaaa      1260
     acttaaggaa aagcaagtag ctgcggacat gaaagaattg accgataacc tgataggtaa      1320
     cagggaagga tgggaaggat tcaaagagac cgtagaagta gctgctaaag aactagtagg      1380
     attaaggaaa ctagaaccaa ggaaaccatg gatgaccaag gaaatactag accttattga      1440
     agaacgaaac aggctaagga aaaaagattt cgataagtac aaaagagtaa aaaatgcaat      1500
     tacacagaaa tgtagattgg aaaaagaaaa gtggatgcac gacaaacata aggaaattca      1560
     acaagatcta agtggaggtc aaactgataa agcctactca aaaattaaaa caatgcagac      1620
     aaagacaaga acaaaaacaa atatggtcaa gaataaaaac ggtgacctac ttttcgaatt      1680
     agaggatgta tgtgaaagat ggaaagagta tattgaggaa ctatatgaag gagaagatat      1740
     tgctaatgag ggggaaattc tggaagaaga gaacagtgtg gatatcgaca tgatagggcc      1800
     acctatatcc aaagaggaat tcaacagtgc cttgaatgat ctaagtaatg gcaaagcgac      1860
     aggcacagat aacatcccag cagaaatatt gaaggaaatt ggagatcaac aaaagagtac      1920
     ttatataaac ttttaaagag tactatgaag atggaaaaga accaccgaca gatttgctta      1980
     acagcaaaac agtaataatc ccaaaaaagg aaatgctctg gactgtgaaa caatagaact      2040
     atctccttac tatcccacac ttccaaaata atgttaacat aataaaaaaa tcgaataaaa      2100
     aagaaaattg aggcaaacct aggagaagac caatttggtt tcagatctgg aaaaggctaa      2160
     ggcaatacta gctctgagga tggtattaga aagacgaatt ggagttaata gaaaaacata      2220
     cttgaccttt atagatttac aaaaagcatt tgacatggtt aattgaaatt gttattccga      2280
     acaatgaagg aaataaatct tgattggagg gacagagatt aatctggaac ctgtataaaa      2340
     gacaggaagc agagatagaa gtgaatggtg tgaagaagaa agcaaaaata aggaggggag      2400
     taaggcaagg gtgcccatta tcaccatatt tgttcaactt atttattgaa aaagccattg      2460
     aaaagttgaa aagaataacc aaaggaatta aaattaacgg ggaacgaata cactgtatcc      2520
     gttttgcaga tgatatagta gtacttgctg actcagtaag gaaatggagt ttatgttgct      2580
     aaaatttgcc aaaatcctaa gagaatttaa tctaaaaatt aataagaaga aaacaaaaac      2640
     tatggtagta gggaagacaa aagaaaaggg taaagttaat attaaactag aagatgatgt      2700
     tctagagcag gttgagaact tctgttattt ggggagcaca atcactgacg acaataaatg      2760
     tatcacagat ataaagagaa gaatagcctg gcaaagcaag ctttccaaaa taaaaggaat      2820
     ttactaacag acaatcatat aagcctagaa agtaggaaaa agtttgccaa aacttttgtt      2880
     tggagtgtct taacatacgg atgtgaagcg tggactctgg gaaaggcaga gaaaaagaga      2940
     ctggaagcaa tggaaatgtg gatatggaga agaatgacga aaacaagctg ggtagatagg      3000
     aaaagtaatg aacaggtctt aagagaagtg aatgagaaca gaactctgct aaattatata      3060
     ggaagaagaa aatcaaaaat gatagggcac ataatgagac acaaccagtt cctaaagaat      3120
     gtatttgaag gaaaagtttt agggaaaaaa ccaagaggca ggccaagagc aacgtatttt      3180
     aataacatca aagaagatat ggggataaaa tcgtatgaag aattgaagag gatgacaatg      3240
     gagagaggga catggctaaa tcgacaaggc atagccttta gtttatgatg atga            3294
//
ID   RTE-33_PPo  repbase;    DNA;    INV; 317 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-33_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-317
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3186-3186 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 317 BP; 121 A; 28 C; 44 G; 124 T; 0 other;
     ggacaatgga aatctttgga ggaggccttc acctgagagg ggtccatgca aaagatatga        60
     catctagatt taaaaaaaaa ttgaatataa tttagattaa taatttatag aaaaaaaata       120
     gtatttagga catttttgat tatttattga aataggttta acattatatg accgaattaa       180
     tttttctaat ctaatatata tgtatgtaat aatctataaa tgacaataat tagacatgta       240
     ccattcaatt ttttttaaac ttttgtaaac tatggcatgg aataaaaggc tttttttttt       300
     ttaatttttt tatttaa                                                      317
//
ID   RTE-34_LMi  repbase;    DNA;    INV; 2340 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-34_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2340
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 283-283 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(60..197,187..447,434..559,540..650,619..750,
FT                 725..1213,1101..1772,1769..2068)
FT                 /product="RTE-34_LMi_1p"
FT                 /translation="MGNAVVVKVHGSRETQESTRCSPGTTFNQTDIGNHRG
FT                 MHRLIAAGRLQGGDRSLYGKMEYTRDPEEGKALKTQCFQIEGKGAKPEASG
FT                 GSTIKEALQETAEEVLGLEERVKRADGTMKIVKRLWKKEMRQGRKGKEEND
FT                 KQDNKIYYRKFMKKRKEADRICRRKKRELERDGLWSRGMDYGAREEYNDEE
FT                 VRKFYKKVRELKKGFQPRTLQRRKASNHVLCRDKEGNFIGGEEQVLDQWAK
FT                 YFSELLNVTTEREDKMSLQKEKTNETEGDQPWQNVSQDERPVPIPTIEEVR
FT                 KAIKSLRNNKAPGNDNISAEMIKGRGEHLTRLVHQLIVEIWEKEEMPDQWN
FT                 MAIICPIHKKKDKANCENYRGIALVSVVYKVLAKVIAMRFAPITEEILRRL
FT                 PVRLSAGQINNRPNFHYKANNGKVLDLHQLQKKYSGDYQCGFRQGRSTTDQ
FT                 IFIIRQIMEKCYEYNVDVHQLFVDFKQAYDSVKRKKLYQTLMEMEFPSKLI
FT                 RLVQMTLTSTKCQVKIEGKLSKEFEVNQGLRQGDVLSTLLFNIVLERVMRR
FT                 VEIDNPGGTLFNRMNQNLAYVDDVCMLSRRLKELEEGFDRLEKEAEQLGVN
FT                 NTKTQYLFASRKNAVVKEKYIKLNRGNYERCEKFQSWGAVTEDSRQIREEI
FT                 KSRIAAGNRAYWAMIKILQSRSLSRKSKVTVYRTVIRPVVMYGSETWTMTV
FT                 AEEELLRRWERKILRKIFGAVIEVGQWRIRRNKELEELYRNLT"
XX
SQ   Sequence 2340 BP; 876 A; 347 C; 638 G; 478 T; 1 other;
     tagagaaaca gtaggaaatg aaaaagcctg catgaggtgt caaagactat aactttgcca        60
     tgggcaatgc agtggtagtg aaggtacatg gctccaggga aacacaggaa agcacacggt       120
     gctcgccagg cactactttt aatcaaactg acattggtaa tcacaggggc atgcaccgat       180
     tgatagctgc agggaggtga ccgatcttta tatggcaaga tggaatacac acgagatcca       240
     gaggaaggga aagctctgaa gacacaatgt ttccaaattg aagggaaggg agccaagcca       300
     gaagcatcag gggggagtac gattaaagaa gctctacaag aaactgcaga agaagtttta       360
     ggcttagaag aaagagtgaa aagggcagat ggtacgatga agattgtaaa aaggctgtgg       420
     aagaaagaaa tgaggcaagg aagaaaatga taaacaggac aacaagatct actacagaaa       480
     attcatgaag aaaaggaaag aggcagatag gatttgcaga agaaagaaac gagaattaga       540
     gagggatgga ttatggagct agagaagagt acaatgatga agaagtaaga aaattctaca       600
     agaaagttcg ggaactgaag aaaggcttcc aaccacgtac tctgcagaga taaagaagga       660
     aattttatag gaggagaaga acaggttcta gaccaatggg ccaaatattt cagtgagctg       720
     ctgaatgtca ctacagaaag agaagacaaa tgaaacagag ggtgaccaac cgtggcaaaa       780
     tgttagtcag gatgaaagac ctgtacctat accaacaata gaggaagtta ggaaggcaat       840
     taaaagccta aggaataata aggctccggg taatgacaat atttcagcag agatgatcaa       900
     gggcagaggt gaacatctaa caagattggt acatcagctg atagtggaaa tatgggaaaa       960
     ggaagagatg ccagaccagt ggaacatggc cattatatgc ccgattcaca agaagaagga      1020
     caaagcaaat tgtgaaaact atcgcggcat tgcattagtc agtgtggtgt acaaagtatt      1080
     agccaaagtc attgctatga gatttgcacc aattacagaa gaaatactca ggagactacc      1140
     agtgcggctt tcggcagggc agatcaacaa cagaccaaat tttcattata aggcaaataa      1200
     tggaaaagtg ttatgaatat aatgtggatg tacaccagct ttttgtagac ttcaaacagg      1260
     cctatgatag tgttaaaagg aaaaagctgt atcagacctt aatggagatg gaattcccaa      1320
     gtaaactaat cagactggta caaatgaccc tcaccagcac aaaatgccaa gtaaaaatag      1380
     aaggaaaact ctctaaagaa tttgaggtca accaagggtt aagacagggt gatgtattat      1440
     ccacgctact cttcaacata gtgttggaga gagtgatgcg aagggtggag attgataacc      1500
     caggtggcac tctgtttaac cgtatgaacc aaaatctagc atatgtcgat gatgtgtgta      1560
     tgctgtctag aagattgaaa gaactggaag aaggatttga cagattagaa aaggaggcag      1620
     aacagttggg agttaacaac accaaaacac agtatctctt tgcttccagg aaaaatgctg      1680
     ttgttaaaga gaaatatatt aagttgaaca gaggcaatta tgagagatgt gagaagtttc      1740
     aatcctgggg tgctgttacg gaggatagca gataagagaa gaaataaaat caaggattgc      1800
     tgcgggaaat agagcttact gggccatgat caagatcctt cagtcacgta gcctgagcag      1860
     aaaatcgaag gtgactgtct atmgaacagt cataagaccg gtggtaatgt atggctcaga      1920
     aacatggaca atgactgtag cagaagagga gctcttgaga agatgggaga ggaaaatatt      1980
     aagaaagatt tttggagccg tgattgaggt gggacaatgg agaatacgga gaaacaagga      2040
     attggaagaa ctgtatagaa atctgactta gtgactgaaa ttaagtgtaa cagattgaga      2100
     tggctgggcc atgtagagcg aatgtcggag gatcgagctg ttaaaaaggt ctacaaggaa      2160
     atccaggtga aagaagcaaa gggaggcctc ggaaacgatg gctggaggat gtggaaaacg      2220
     atttgagaaa gatgggagta ggagatggag gaaacgagca gaaaatcgtc aggattgggc      2280
     tgcgatcatc agagaggcca aggccctaca tgggctgtag cgccaaggag taagtaagta      2340
//
ID   RTE-34_PPo  repbase;    DNA;    INV; 228 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-34_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-228
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3187-3187 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 228 BP; 78 A; 41 C; 54 G; 55 T; 0 other;
     tcttggatat ttgcgtggac cgaaatacga attgttacag actatcattc agggtaagat        60
     tctagggaaa agaagtccag gaaggagaag aacatcgtgg cttaaaaatc ttcgccaatg       120
     gtacaacaaa agtacgcgtt ctatatttag agctgctgtg tccaaacttc aagtcgctgt       180
     aatgattgcc aaccttcgtt aggagacggc accaaaagaa gaagaaga                    228
//
ID   RTE-35_PPo  repbase;    DNA;    INV; 350 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-35_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-350
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3188-3188 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           13..240
FT                 /product="RTE-35_PPo_1p"
FT                 /translation="KLNGDGRDTLTRTTNGVNHKLLVSKKGKRKRGRQHKR
FT                 WEDDIKKAAGETWSRKAKRRGEWKNLEEAYVQLGHTDNK"
XX
SQ   Sequence 350 BP; 159 A; 47 C; 70 G; 74 T; 0 other;
     atcacacaat aaaaactaaa tggagatgga cgggacacac ttacgcggac gacaaatgga        60
     gtaaaccata aactactggt atccaaaaaa ggtaaaagga aacgcggaag acaacacaaa       120
     cgatgggaag atgacataaa aaaggctgca ggagagacct ggtcaagaaa ggcaaaaaga       180
     aggggagaat ggaagaattt ggaagaggcc tatgtccaac ttggacacac agataataaa       240
     taacaaatga aataaaagtt aaataaaatt aatattataa tgtatcaata ttcaactcaa       300
     ttatgtaatg tgacattaat tatctgaata aaggcttatt attattatta                  350
//
ID   RTE-36_LMi  repbase;    DNA;    INV; 3012 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3012
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 284-284 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(481..639,643..885,866..1081,1160..2401,
FT                 2289..2582,2579..2983)
FT                 /product="RTE-36_LMi_1p"
FT                 /translation="MSIGLDSGGDTINIVCAYAPQTGCEEQEKEDFWNELD
FT                 TEMAAIPAEDASTVATMATLGQAELEERVHGGWGIGVINPEGENIMEFAVA
FT                 SDMAVVNTFFKKSEDKYVTYKSGNSDDYLMCRRMHXGEVKNCSYKGKTVVI
FT                 KGECVTNRPVIMDCEILARRKGKQRFEQKIKWWKLKYPEMASAFKGTVLGN
FT                 IVQGERPVSGGKKTAKTEVQQAVRSKKQAKKVDTLGVMRMGKNTREGKGGK
FT                 DSSLWPKNEQRMSCTRNWVHLKSEELFRVAKARDKASKDFTHIRQVKDGDG
FT                 KVLWNESDIRQRWHDYFQKLLNEEHPRKDQGRGMPNENLTPDITREEVSEA
FT                 LGRMKNGKAVGPDNVPVEAWKALGEAGVDLLWGLMKKIYEEEKVPVIWRES
FT                 TVVPIYKGKGDIQECKNYRGIKLTSHTMKIWEKIMDKRIREETKISDKQFG
FT                 FMPGRGTMDATFILRQLMEKYGERQRDLHLVFIDLEKAYDTVPRDVLWRSL
FT                 RARGVPEKYVRLVKDMYDGACXKVRSSVGVTEKFPIMVGLHQGSALSPYLF
FT                 NIVMDVLTEGVQDLALWSGSFADDVVIVEESKEKVERTSERWREEMENGGL
FT                 RVSRKKTEYLWFGGDGRNYVGKKEHRRDGGRKWKMEDSELAGRRPNTCGLV
FT                 EMEEIMLANDQLERVGEFKYLGSYVTSKGDLDKEVSHRIQAGWTNWKRVSG
FT                 VLCDKRIKPKTKGNFFNRSVRPAMLYGSEIWPLKKVQEKKLNVAEMRMLRW
FT                 MMGKTRMDKIRNDLIREQTSVVEASKKAQERRLQWYGHVMRRDGGHLLQRT
FT                 MELQVEGRRRRGRPKRRWMDCITEDLREKGLSREDTWDREKWKAKIRNSDP
FT                 "
XX
SQ   Sequence 3012 BP; 1045 A; 455 C; 964 G; 544 T; 4 other;
     gccagccgca caggggcaag cccggtaaat ggggagggtc gacggcagga agggcatccg        60
     gtcaagaaaa caccgccaaa acaatacgga aagttcatat acagatggaa gtgagagggc       120
     tagggcgttc cccataggcg acgcgcaagg tgttcgcctg agccctgtga gaaaggacta       180
     gggctaccgc gtcatggacg ggcgcggcta aagaagatat cctgcgagtc gggtcmctca       240
     atgttggaag catgacagga aggagtaggg aacttgctga cackatggtg ggaaggaaga       300
     taggggttct gtgtattcag gagacccgat ggaagagtgt ataaaacaag agaactggga       360
     gacggttgta aactgatcta cagtggtgca agcagagaag gaagaaacgg agtgggtatt       420
     gtcctggata gaaaatggaa ggaccatctg gtgagagtga ataggaggaa tgacaggata       480
     atgagcattg gactagacag tggaggagac acaataaaca ttgtgtgtgc ttacgcacct       540
     cagacaggct gtgaagagca agaaaaggag gacttctgga atgaactgga cacggagatg       600
     gcagcaatac cagcagaaga tgcgtcaacg gtggcgactt gaatggccac gttgggccaa       660
     gcagagctgg aagagagagt gcatggtggg tggggtatag gagtcataaa ccccgaagga       720
     gagaatataa tggaatttgc tgtggcaagc gatatggcag tggtgaacac cttcttcaag       780
     aagtctgaag acaagtatgt tacctacaag agtggaaact cagatgacta cctgatgtgt       840
     agaaggatgc acmttgggga ggtgaaaaac tgtagttata aagggtgaat gtgtcacaaa       900
     ccgtccagta ataatggact gtgaaatatt ggcaagaagg aaaggcaagc aaagatttga       960
     gcagaaaatc aaatggtgga aacttaagta cccagaaatg gcaagtgctt ttaaaggtac      1020
     tgtcctaggc aacatagtac agggggagag gccagtgagt ggtggaaaga aaacagcaaa      1080
     gtgatgtaag agcagcagag gaagttcttg gaaaacatct ggaaagggcc ctccagggga      1140
     caaagagtcc tggtggtgaa cagaagttca acaggcagta aggagtaaaa agcaggcaaa      1200
     aaaagtagat actctaggag tgatgaggat ggggaagaat acaagagaag gaaaaggagg      1260
     caaagacagc tcgctatggc caaagaacga gcagcggatg agctgtacaa ggaactgggt      1320
     acacctgaag tcagaagaac ttttcagggt ggcaaaggca agagataagg catcaaagga      1380
     cttcacacat ataagacaag taaaggacgg agatgggaaa gtgctttgga atgagtcaga      1440
     tataagacaa agatggcacg actacttcca gaagttgctg aatgaggagc acccaaggaa      1500
     agatcaaggg aggggaatgc caaacgaaaa tttaacgcca gatatcacta gagaggaagt      1560
     gtctgaagca ttagggagaa tgaaaaatgg aaaggcggta ggaccagaca acgtgcctgt      1620
     agaggcttgg aaggcactgg gagaggctgg agtagacctg ttatggggcc tgatgaagaa      1680
     gatatatgaa gaagaaaaag taccagtgat atggagggaa agtacagtgg taccaatata      1740
     caaaggaaaa ggagatattc aagagtgcaa gaactacagg ggaattaagc taacatccca      1800
     tacgatgaag atctgggaga aaattatgga taaaaggatc agggaagaaa caaaaatctc      1860
     ggataagcag tttgggttca tgccaggcag aggaacaatg gatgcaacct tcatcctgag      1920
     acaactgatg gaaaagtatg gggagcgaca aagagaccta cacctagtgt ttatagacct      1980
     ggagaaggcg tatgatacag taccgagaga tgtactgtgg agaagcctga gagcgagggg      2040
     tgtgccagaa aagtatgttc gactggtcaa agacatgtat gatggtgcct gcwctaaagt      2100
     aagatctagt gtcggagtga ctgagaagtt ccctatcatg gttggactgc atcaagggtc      2160
     agcactaagt ccatacctgt tcaatatagt gatggatgtg ttgacggaag gagtgcagga      2220
     cctggcttta tggtcgggta gttttgcaga tgacgtggtg atagtggagg agagcaaaga      2280
     gaaggtagaa agaacatcgg agagatggag ggaggaaatg gaaaatggag gactcagagt      2340
     tagcaggaag aagaccgaat acctgtggtt tggtggagat ggaagaaatt atgttggcaa      2400
     atgatcagtt ggagagagtt ggagaattca agtacctggg ttcctatgta accagtaaag      2460
     gagatttaga taaggaggta agccacagga tccaggctgg atggacgaac tggaaaaggg      2520
     tgtcaggtgt gctctgcgac aaaagaataa aaccaaagac aaaaggaaat ttttttaatc      2580
     ggtgagacca gctatgttgt atggtagtga gatctggccg ttaaagaaag tgcaggagaa      2640
     gaaattaaac gtggctgaga tgcgtatgct gaggtggatg atggggaaaa cgaggatgga      2700
     caaaataaga aatgatctta ttcgagagca gacaagtgta gtggaggcat cgaagaaagc      2760
     ccaggaacga agactacaat ggtacgggca cgtgatgaga agggatgggg gacacctgtt      2820
     gcagagaaca atggagttac aagtggaggg caggagaaga agaggcagac caaagagaag      2880
     atggatggac tgcatcactg aagacctgag agagaaggga ctgagccggg aggacacgtg      2940
     ggaccgagag aaatggaagg caaaaatcag gaacagcgac ccctgaactg ggacaagctg      3000
     aagaagaaga ag                                                          3012
//
ID   RTE-36_PPo  repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-36_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-396
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3189-3189 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5'-truncated.
XX
SQ   Sequence 396 BP; 133 A; 91 C; 104 G; 68 T; 0 other;
     agccgaccga aagaaaattg atgcttcgaa atgtggtgct ggggagaatg tgagaatacc        60
     gtggactgca acaggacaac gagtcaatac tgaagaactc aaaatactac agctatccac       120
     gatatgtctc agccgatgct ggaatatttc ggtcacgttg ctaggcgacc ccccgaaaac       180
     ctagaaaaac ttactattac gggcaaaatc gaggggaaga gatctaaagg acgtcgccct       240
     atgcgttgga cggaccaaat atgcaccact ctcgacacaa ctatccataa cgccatagcc       300
     gaagacagca cagagtggag aaacaccctt cgagagagtg tcaaggagag tggtcgcgac       360
     cctcaggaat gaggaaacga tccggagaga gagaga                                 396
//
ID   RTE-37_LMi  repbase;    DNA;    INV; 3319 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3319
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 285-285 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(192..962,929..1225,1275..1868,1843..3132)
FT                 /product="RTE-37_LMi_1p"
FT                 /translation="MMASSLKGSTTPGGNQSTIVKDNVSEPTDSGELTPTC
FT                 KRLKSKKVSYFATFNVNSLLKIGKLKHLTDTLTNQNIAITALQETRYTDEA
FT                 AFESEGFRXLKGKPGKRVMKNVPQLGTGFIINRQILGAITDFSSKSSRLST
FT                 LTFRGANKMYTMVNVHAPTNETNKTDPEKVEEFWXDLEETLSKIPTKNVII
FT                 LLGDFNAQLGKERKYRNIIGNYPAHNRTNXNGERLVEICKTFDLIMKSTAF
FT                 KRLPRKQMTWVCQILCKTDDMGMPNPLLGEFQLDHVAIPKRAGKEIQNVKV
FT                 LRGANLDSDHFLXKIKIKIIPKVHQPRNTIRTVKYDTGKLKTSTDFKTSLS
FT                 QKDYQGWEQLKDAAIEKRRKAWADWCSHKTLENLNKFQEVRKNTAKTIRNL
FT                 KRKYEQARXTQIEEDFQKNNTRDFYRTFKTNLNRYDPPTLSFKNKEGKIVY
FT                 GEMENSQILAEYFEELLNCEAPADTFSYNDTEPNPDSEPPTTEEIKNIINT
FT                 LKNNKAPGEDGIIAELFKYANENVIIELKQIISKIWEEEKLPEGWTSALVH
FT                 PIHKKRRYIPFTKKGDKTDPGNYRGISLIPVAYKVFSKALLNRVEKQLNPQ
FT                 IDEYQGGFRKGRSCAEQILNLKMIMAYQKQRCKKFVLTFVDFKKAYDSVDR
FT                 QTLFQILKEMKLDRKSSELVRQTLNNTTSKVKFRGKLSESFKINTGVRQGD
FT                 GLSPMLFNCVLDKVIREWRQGMKGVGGIRLGCKKKGIRVDCLAFADDIVLL
FT                 SESLEEAVNQTKELQRQAAKTGLQISIEKTKYMTNITEAPGWMAIDRGKIQ
FT                 KVEKFKYLGEWIDTGLTEKDAMEARINKINLAYKLTMNIYNKKNISINAKL
FT                 KHYQTVIRPEALYAAETLNLIRTGVIKRLELVERKILRRILGPRRTEDGQF
FT                 RNRSNQELYSKIEKISNIIKKRRCEFFGHICRMDQGRLTQQISQFLLYKKS
FT                 KIRWIQEVQRDLEEMGIRDQEIHNRVIFK"
XX
SQ   Sequence 3319 BP; 1277 A; 625 C; 729 G; 682 T; 6 other;
     tattggtgga ttgagtaacc ctgaagtgct gctgccggtc ccaacccgga taaaggagga        60
     gggttggcag ccaaagaagc cgtaaaagaa aagccgggtc acatctcaag gcacctctga       120
     ggctaactac cccagttgta atcacgttga cgcctaggcg tcaaccscca atataaatca       180
     ttcgtttcag catgatggca agttcgctca aaggaagcac taccccaggt ggtaaccaat       240
     ccaccattgt caaggacaat gttagtgagc caacggattc tggggagctc acaccaacat       300
     gcaagagatt gaaaagcaag aaagtttcat actttgcaac cttcaacgtt aactcactcc       360
     tcaaaattgg aaaactgaaa catcttactg acactctgac caaccaaaat atcgctataa       420
     cagcactaca agaaacgaga tatacagatg aagcagcgtt tgaatcagaa ggatttcggw       480
     ttctgaaagg aaaacctggc aagagagtaa tgaagaacgt acctcaactc ggcacaggtt       540
     ttatcatcaa tagacaaatc cttggagcca tcaccgactt cagctctaaa agcagtagac       600
     tctccacact tacctttaga ggagcaaata agatgtatac tatggtcaat gtgcatgctc       660
     ccacaaatga gactaataaa acagacccgg agaaagtgga agaattttgg gamgacctgg       720
     aggaaacact atccaagatt ccaaccaaga atgttattat acttcttgga gacttcaatg       780
     ctcaactcgg caaagaaaga aaatacagaa acatcattgg gaactatcca gctcacaaca       840
     ggactaatak aaatggtgaa cgactggtgg aaatttgtaa gaccttcgat ctgataatga       900
     aatcgacggc atttaaacga cttcctagaa aacagatgac atgggtatgc caaatcctct       960
     gttaggagag ttccagctag atcacgtagc aataccaaaa cgtgcaggga aggaaattca      1020
     aaatgtaaaa gtcctcaggg gtgccaactt agactcagat cactttctgt mcaaaattaa      1080
     gatcaaaatt ataccgaaag tccatcagcc tagaaacact atccgtaccg tgaagtatga      1140
     tacaggaaaa cttaaaacaa gcacagattt taaaacgagc ctgagtcaga aggactatca      1200
     agggtgggaa cagctgaaag atgcctgatt tacagctaag gaaactgtta gcctggtggt      1260
     cgcagaaggg ataagcgatc gaaaaacgtc ggaaagcatg ggctgattgg tgctcccata      1320
     aaacactaga aaatctaaat aagttccaag aagtaaggaa aaatactgcc aaaactatca      1380
     gaaatcttaa aagaaaatat gaacaggcac gcttmactca aatagaagag gactttcaga      1440
     agaacaatac gcgagacttc tatagaactt tcaagactaa cttgaacaga tatgatcccc      1500
     caaccctcag ctttaagaat aaagaaggga agatagtata tggagagatg gaaaacagtc      1560
     agatcttggc agaatacttc gaagagctcc tgaactgcga agcaccagct gatacattca      1620
     gctacaatga cacagaacct aaccctgact cagaaccacc tactacagaa gagattaaga      1680
     acatcataaa taccctgaag aataacaaag ctcccgggga agacgggatc attgcagaac      1740
     tcttcaagta tgccaacgag aacgttatca ttgaactaaa acaaattata agtaaaattt      1800
     gggaagaaga gaagcttcca gaaggctgga catcggcact agtacatccc attcacaaaa      1860
     aaaggagata agacagatcc tgggaactac aggggaatat cgttaatacc tgtggcctat      1920
     aaagtatttt caaaagcatt gctaaacaga gtggaaaaac aactaaaccc acagattgat      1980
     gagtaccaag gaggcttcag aaagggtaga tcatgtgcag aacaaatttt gaatcttaaa      2040
     atgataatgg catatcaaaa acagaggtgc aagaaattcg tgcttacatt cgtagacttt      2100
     aaaaaagcat atgattcagt agacaggcaa acactgttcc aaattttaaa ggagatgaaa      2160
     ttagatagaa aatccagtga actagtgaga cagaccctaa acaatacaac atccaaagtc      2220
     aagttcagag gaaaactgtc ggagtccttc aagattaata ccggagtgag acagggagat      2280
     ggactatccc ctatgctctt caactgtgta ctcgacaagg tgatcaggga gtggcgacaa      2340
     ggaatgaaag gagtgggcgg gatacgactg gggtgcaaga aaaaaggaat acgagtagat      2400
     tgccttgcat tcgcggatga tattgtttta ctgtcagaat cattagaaga ggcagtgaac      2460
     caaaccaaag aactacagag acaagcagct aaaacaggcc tacagatctc tatcgagaag      2520
     acaaaatata tgacaaacat cacggaagct cctggatgga tggcaataga cagagggaaa      2580
     attcagaagg tggaaaaatt caaataccta ggagaatgga tagacactgg actgacagaa      2640
     aaggatgcaa tggaagcacg aataaacaaa attaatttag catataaact gacaatgaac      2700
     atctataata agaagaatat ttctatcaat gcaaaactga aacattacca gacagtgatc      2760
     cgccctgaag ctttatatgc agcagaaaca ctcaacctaa taagaactgg agtgatcaag      2820
     aggctagaac tggtggaacg gaagattctc aggagaatat taggacctcg aagaacagaa      2880
     gacggtcagt ttagaaatcg atccaaccag gaactctatt ccaaaataga aaaaatatcc      2940
     aatatcatta agaaaagaag gtgcgagttc tttggacaca tttgcagaat ggaccagggg      3000
     aggttaacac agcaaatttc acaattcttg ttgtacaaga aaagcaaaat acggtggatc      3060
     caagaagtac aaagggatct ggaagaaatg ggaatacggg atcaagaaat acacaacagg      3120
     gtgattttta aataaaaaat tcaggcattt gcaggatttg aggacagaac tagaccgaga      3180
     acgaaatcat cgtggacaga agagcgaaga aagatgcaaa gtatgagaat gaaagaatac      3240
     tggaagagga ggaagaacgg aagaaaggaa gctgatgtga attaacgtgg tccaaagatg      3300
     gccgaaacga aagaagaag                                                   3319
//
ID   RTE-37_PPo  repbase;    DNA;    INV; 270 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-37_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-270
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3190-3190 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~92% identical to consensus. 5'-truncated.
XX
SQ   Sequence 270 BP; 116 A; 32 C; 46 G; 76 T; 0 other;
     taccaaacat aatacttttt ataaacaaca gagaagaagc attacagaac gattagaaac        60
     tagtgaaacc taggaaagaa atagaaatct gtagaggagg cctgtgtccg aggacaagct       120
     gtagatagag gattaaataa caacaacagt cagcaattca tcaagacagt agtgaaaaat       180
     aactatgttt ataataaatt ttgttttata gtattgtagg aaacatattg taaaatatct       240
     atagcaataa aggctttatt attattatta                                        270
//
ID   RTE-38_LMi  repbase;    DNA;    INV; 3491 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3491
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 286-286 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus. The the promoter  region (5'-end
CC   195-bp) is shared between RTE-38_LMi and RTE-47_LMi families.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1069..1809,1813..2097,2072..2185,2189..2779,
FT                 2689..3432)
FT                 /product="RTE-38_LMi_1p"
FT                 /translation="MSTQFLKPVNKLTTWKSPNSTLGEFQIDHVAISNKNT
FT                 KEILNVRTRKGFFESDHHLLQIKIKFQPNRKKPQMNKTFRIDPEYLKLNKK
FT                 EISQEIRQSNATNWKELAEVLKSTMHLGKPPRKRKHRWWNSSCDQAIEERT
FT                 QAWKTFSSNKTTEKWQEFLRIQKNTSKAIRREKRRYDINRLKEIEQEFLKN
FT                 NTRNFYTIFKENLTGYQPPNLCFRRPDGSLETNTRNNCQILANIFTHSSTA
FT                 SRRQSNISKTPSNPDSKPPSLKEVKEIINSLNNKSPGEDGIIAEMWKLNDS
FT                 TLTQATHRIISKVWETEQIPAEWKCALIHPLHKKVQKLIQITTGEFHCSQL
FT                 QGNFTAPSNIQNFFKGPVKQTRRTGGPVNRRVSGRVSRSILRRTNMEPKDI
FT                 LQMRRCRNTVVTFVDFKKAYDSIDRQTLFHTLEEFRIDRKTRSIIQQALTG
FT                 TTSKVKFMGETSEAFHIHTGVRQGDGLSPLLFNLVLEKIVRTWEKEIKGIQ
FT                 LGIKKEQRIRVKCLAFADDLAILTNNREEARLALEKLHEISQKTGLQISYE
FT                 KTQYMENKLQIVSPSQPSMEKWHKFLTSDIKDSVHGKQAADSLPITTQYGK
FT                 VAQVSHFRYLGEMIQPSGLNSIANQERVSRLQRAYKLTWNHYNKKSISVNA
FT                 KLRHYNTVVLPEALYAAETTVIHGHTKIREIEKQERKILRKIYGSVFREGI
FT                 WIKRPTREIYKDMETITDTIRKRRMKFYGHISRMNETRLTRQIFEIANKSK
FT                 NKTKWITETEEDIKELGITQDNINNREQFRNIIKKHKLKQEHTENRTGKKW
FT                 SERKREHSERMKRIWEERKKKKS"
XX
SQ   Sequence 3491 BP; 1374 A; 696 C; 692 G; 728 T; 1 other;
     gccatagccg gtcccaagcc cggttgagaa aggaggaggg ggaggagtaa cacctcgtta        60
     aaaaaccttg gttcacctgg ccctggtgat agcacctcgt gagggcccct gccagggtac       120
     ggtgaagacc tcaacggcag tgaaggcgga gatgaagatc atcggtacgg cggaactggc       180
     ggaagaggca gccctaatcc actagcgtct gccctggaat ccagcggtta gtggtcagcg       240
     tctgttcacc tagttggtgc ggctgctcct agttcttctt gatctcaaca atcaagtcgt       300
     aaacatgtga ccttcgtaga agatcaccaa aacaagtttc aacttgaata agcatgatgg       360
     aacaaaagga aagaattcca ctaccccagg catcagtctc tagactgaat tctcctggtc       420
     atcggatctg ggggaccagg aacttcatgc gcagaagagt cggagcttct caaaatctct       480
     aagaccaaaa cagaaaaact tcataggaac tctcaacaca aacacactct caaaagtagg       540
     taaacttaaa caactcacaa acactgtgga aaaattccac ataaaaatcc ttgcgattca       600
     agaaacacga tttaccgacg aaaatcattt tgtacaggaa acttcagaat ctacaaagga       660
     aaacctgmaa tccagttgaa caaaggaccc aaacaatttg gcacagcttt tgttgtgcat       720
     aaatcaatta cagactcaat aataaacttc cattcaacat cagaaagaat atccacaatc       780
     tcattaaaat ctggaaacaa ggcatacaca ctgataaatg cacacgctcc cacaaatgat       840
     tacaatagaa aagacccaca ggtaatagag gacttctggg aactactgga ggaaacctca       900
     aataaaattc ctgcacatca tgtgaaaatt cttttaggag atttcaatgg acaactcggc       960
     aaagagaaaa aattcaggaa aacaacggga attcatacag ctcacaagag gacaaataaa      1020
     aacggcgaga gactgataaa cttctgtgaa aattttgatc ttaaaatcat gtccacacaa      1080
     ttcctaaagc ctgtaaacaa acttacaact tggaaatcac cgaactcaac tttgggtgag      1140
     tttcagatag accatgttgc tatatctaac aagaatacga aagaaatact taacgttcga      1200
     acaagaaagg gattttttga atcagatcac catctactgc aaataaagat taaatttcaa      1260
     cctaacagga aaaaaccaca aatgaacaaa acattcagaa ttgatccaga atacctgaaa      1320
     cttaacaaga aggaaattag ccaggaaatt aggcaatcaa acgcaacgaa ctggaaggaa      1380
     cttgcagaag tattgaagag cactatgcat ttaggcaaac ccccaagaaa gagaaaacac      1440
     agatggtgga acagctcatg tgatcaagca atagaagaaa gaacacaagc atggaaaact      1500
     ttcagtagca acaaaactac agaaaaatgg caggaatttc tgagaataca gaagaataca      1560
     tccaaggcaa tacgaagaga aaaacgtaga tatgatataa accggcttaa ggaaattgaa      1620
     caagaatttc tcaaaaacaa caccagaaac ttttacacaa ttttcaaaga gaacctaaca      1680
     gggtatcaac cacctaatct gtgttttcgc cggcccgatg gatcactgga aaccaacacg      1740
     agaaacaact gtcagatttt agcaaatatt ttcacgcact cctcaactgc gagccgccga      1800
     cagagcaact agatttcgaa aaccccatca aatcccgatt caaaaccacc atcacttaaa      1860
     gaagtaaagg aaataatcaa ttctctgaac aacaagtctc caggtgaaga tggaatcata      1920
     gcagaaatgt ggaaattaaa tgacagtact cttacacaag caactcacag aattatatca      1980
     aaggtttggg aaactgaaca aattcctgca gagtggaaat gtgcactaat ccatcctctc      2040
     cacaaaaagg tacaaaaact gatccaaata actacagggg aatttcactg ctcccagtaa      2100
     tatacaaaat tttttcaaag gccctgttaa gcagactaga agaacaggcg gaccagttaa      2160
     taggagagta tcaggcaggg tttcgtaaag gtcgatcttg cgtcgaacaa atatggaacc      2220
     taaagacatt ttacaaatga gaagatgcag aaacactgtg gtgactttcg tagattttaa      2280
     aaaggcttat gattcaatag acaggcaaac actattccac acattagagg aatttcggat      2340
     tgacaggaaa acaaggtcaa ttatccaaca agcattaaca ggaacaacct ctaaagtcaa      2400
     attcatggga gaaacgtcag aagcatttca catccatact ggtgtccgcc aaggagatgg      2460
     actctccccc cttttgttta acttggtact ggagaaaatt gtgaggacat gggaaaaaga      2520
     aattaaggga attcaacttg gaattaaaaa ggagcagaga atcagggtga agtgtctggc      2580
     tttcgcggac gatcttgcta ttctaacaaa caacagagaa gaagcgagac tcgcactgga      2640
     gaagcttcat gaaatctcac agaaaactgg gctacaaatc tcttatgaaa agactcagta      2700
     catggaaaac aagctgcaga tagtctcccc atcacaaccc agtatggaaa agtggcacaa      2760
     gtttctcact tcagatatct aggagagatg atccaaccat caggactgaa ctcaatagcc      2820
     aatcaagaaa gggtctcaag attacaaaga gcatataagc taacttggaa ccactacaat      2880
     aaaaaatcta tttctgtcaa tgcaaaacta aggcattaca acacagtagt cctaccagag      2940
     gcactctatg ctgcagaaac tacagtgatt catggtcata cgaagatcag agagattgaa      3000
     aaacaggaaa ggaaaatttt gaggaaaata tatggttcag tgtttcggga aggaatttgg      3060
     ataaagcggc caactagaga gatttacaaa gacatggaaa caataacgga caccatcaga      3120
     aagagaagga tgaaatttta tggacatatc agcaggatga atgaaaccag gctcacaagg      3180
     caaatatttg agatagcaaa caagagcaaa aacaagacga agtggatcac tgaaacagaa      3240
     gaggatatta aagaactggg aatcacacaa gacaacataa acaatagaga acagttcagg      3300
     aacattataa agaaacataa acttaaacaa gaacacacgg agaacagaac aggaaaaaag      3360
     tggtcagaac gcaagagaga acacagtgaa cgcatgaaga gaatttggga agaacgaaag      3420
     aagaagaagt cataattact caagttcaat cgctctcttt aaagggaata atcgaaataa      3480
     taataataat a                                                           3491
//
ID   RTE-38_PPo  repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-38_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-179
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3191-3191 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..150
FT                 /product="RTE-38_PPo_1p"
FT                 /translation="NMPTTTRTRGRPPTTWQTTVQKDMKEIKLDEQASKIR
FT                 AVWRLRTRKADPK"
XX
SQ   Sequence 179 BP; 66 A; 41 C; 48 G; 24 T; 0 other;
     aacatgccga cgacgacgcg aactcgcgga agaccaccta ccacttggca gacgacggtc        60
     caaaaggata tgaaggaaat aaaacttgac gaacaagcct ctaagattcg tgctgtctgg       120
     agacttagga caaggaaggc cgaccccaaa taactgggaa aaggcgaaga tagaagaag        179
//
ID   RTE-39_LMi  repbase;    DNA;    INV; 3534 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   14-SEP-2015 (Rel. 20.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon, consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-39_LMi.
XX
NM   RTE-39_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3534
RA   Bao W.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Direct Submission to RR (14-SEP-2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1211..1579,1548..3485)
FT                 /product="RTE-39_LMi_2p"
FT                 /translation="MSVIKSANIESDHYISVAKFRIKPEVRRNTIDKLRSQ
FT                 NMTMINCNRKIKGRFKTRTSKLGMTSEMASSKQQSELHHLPNVKNRHGGTI
FT                 NVTRLFKNDKKHGKSGMQTKVRKIEKTSYKREGSHRKPPTKEKEATRIFKK
FT                 ERKLFIMNELHQINEDFKRHKTRNYYQLFKKQLTKFIPPTLQLASPKTNQM
FT                 AHSKQDNCDIMAKYFEDLHNCHKPETKFTFSENYTQNNNSTAPDLKELKEI
FT                 IYALKNNKASGEDGIKAELWKALDNDIILKLKNIIDKIWEKEEIPEDWKTA
FT                 IIHPLHKKGPKTDPNNYRGISLLPVTYKILSKALLNRAEHQLDPQIGEYQG
FT                 GFRKNRSCIEQIWNLKTILEMRKLRNKDTTVTFVDFMKAYDSIDRESLISI
FT                 IKEFGLDPKTTNIIKDTLTNTSSKVRFCGEFSKSFEIKTGVRQGDGLSPIL
FT                 FNCALEKVIREWRKSDTKGIKLGNRKDNIYVDCLAFADDIALITDTPENAK
FT                 IQIENLTEQARKVGLQISFTKTEFITNVKNCPEKLLINQNKIKKFNSFKYL
FT                 GEWLSINNNEKESLEERAKKMNIAFQTTRNIYKKKALSWDTKIKHYSTVVK
FT                 TEALYGAETLKLVQKGGINKLMKMERRLMRSILGPRTTGTEYNRPRPNKEI
FT                 YEHVENIIHTMRKRRMSFFGHLARMENDRLTKQIFNKIMKLKGQPVWFTQT
FT                 LNDLKEANIDIMDTHNRNLYRNKIQKAIFREEEERKRKQPHNIEELRRQRS
FT                 ERMKLMWAERKKKQESKN"
FT   CDS           join(358..810,821..1066,1060..1263)
FT                 /product="RTE-39_LMi_1p"
FT                 /translation="MDKKALCNQNTPGGQSSTIPTGKVSSGHSDSGGPQHK
FT                 VLGESEHPEDSTHKIKSKQINYIATLNTQSLIKLGKLKTITDFLDXKNIMI
FT                 TAVQETRYVDNEPFESNGYRIYKSKSTSKILKGAPIXGSGFIISNKIIDSI
FT                 VSFDPIDERTSLIHEQSVHNSNVLPPQMIKPEETRHNVDEYWEKMIITCKI
FT                 PSKHTIILWETSSTNWKKKIGKRLVNLCSQVYQQKRGKTDRTMNYVNHNIV
FT                 VKSTSFERNPKKLTTWVSPNPICGEKQLDHIAISRKSSKEIMNVSHKIRKY
FT                 RIGSLHLCS"
XX
SQ   Sequence 3534 BP; 1430 A; 669 C; 681 G; 752 T; 2 other;
     atctgctata gccggtccca aacccggttg agagggggag gataacactc gtaaaaacct        60
     tggttcacct ggcccgggtg atagtacctt gtgaggtccc ttgtcagggt acaatgaaga       120
     cctcaacggt agcagcagcg gaagagatgg actctggtac ggtgaagctg gcgggaagag       180
     gcaaccttac ctattatggg aaggaagtta aatccagaag cgtctgtttc atattgagcg       240
     gctccctggt aggcgtctgt tcaccatgtg aggtgcggcc atttcctata catcttacct       300
     tcaaaagtaa gaggtgaact cgattagcac agactaatca ccaaaacaat aatcagtatg       360
     gataagaagg ctttatgtaa tcagaatacc ccaggaggtc aatcctccac catacccact       420
     ggtaaggtgt caagtggtca ttcggattct gggggaccac aacataaagt tttgggtgaa       480
     tcggagcacc ctgaagatag cacacacaaa attaaatcta agcaaataaa ctatatagca       540
     acattaaata cccaatctct cattaaactt ggaaaactaa aaacaataac agatttctta       600
     gatwaaaaga acataatgat tacagctgta caggaaaccc gttatgtaga caatgaacct       660
     tttgaatcaa atggatacag aatttataag agcaagtcca ccagcaagat attgaaaggt       720
     gcacccattt tmggtagtgg tttcattatc tctaataaaa taattgactc aatagtaagt       780
     tttgatccaa ttgacgaaag aacatctctc taacatttaa atccacgaac aaagtgtaca       840
     caattctaat gtcctgcccc cacaaatgat aaaaccggaa gaaaccagac ataatgtaga       900
     tgaatactgg gagaaaatga taattacatg taaaatacca tcgaaacaca ctattatcct       960
     ctgggagact tcaagcacaa attggaagaa aaaaatagga aaacggttgg taaatctctg      1020
     ctcacaagtg taccaacaaa aacggggaaa gactgataga actatgtgaa tcacaacata      1080
     gtcgtaaaat ccacgtcctt tgaaagaaat cctaaaaagc taacgacatg ggtatcacca      1140
     aacccaatat gtggggaaaa acagctggat cacatagcaa taagcagaaa gtcatctaag      1200
     gaaataatga atgtcagtca taaaatccgc aaatatagaa tcggatcact acatctctgt      1260
     agctaaattt agaattaagc ctgaagtacg caggaacaca atagacaaac taagatccca      1320
     aaatatgacc atgataaact gcaaccggaa aattaaaggc agattcaaaa ccaggacttc      1380
     caaacttgga atgacctccg aaatggcatc atcgaagcag caatcagaac tgcaccacct      1440
     accaaacgta aaaaacagac atggtggaac gatcaatgtg acaaggctct tcaagaacga      1500
     caaaaagcat gggaaaagtg gaatgcaaac aaaagtcagg aaaatagaga aaacctccta      1560
     caaaagagaa ggaagccact agaattttca agaaagagag gaagttgttc atcatgaatg      1620
     agctacatca aatcaatgaa gatttcaaaa ggcataagac gagaaattat taccaactgt      1680
     ttaagaaaca actaaccaaa tttataccgc caacattaca attagcgagc ccaaaaacta      1740
     accaaatggc ccattctaaa caggataact gtgacataat ggcaaaatat tttgaagatt      1800
     tacacaactg tcataaacct gaaaccaaat tcacttttag tgaaaattat actcaaaata      1860
     acaattcgac ggccccagat ttaaaagaac ttaaagaaat catatatgcc ttaaaaaaca      1920
     ataaggcatc cggagaggat ggaattaagg cggagttgtg gaaggctcta gataatgaca      1980
     tcattcttaa actcaaaaat ataatagata aaatctggga gaaagaagaa attccggaag      2040
     actggaaaac tgccatcata caccctctgc acaagaaagg ccctaaaaca gatcccaata      2100
     attatagggg gatatcactt ctgccagtaa cctataaaat cctatctaaa gcactactca      2160
     atcgggcgga acatcaacta gacccacaaa taggggaata ccaaggtgga tttcggaaaa      2220
     atagatcatg cattgaacag atctggaatc taaaaaccat cctagaaatg agaaaactga      2280
     gaaacaaaga cacaactgtt acctttgtcg atttcatgaa agcttacgat tccatcgata      2340
     gagaatccct tatcagtatt ataaaagaat tcggcctaga tccaaaaact acaaacatta      2400
     tcaaagacac attgacaaac acctcatcta aagtcaggtt ctgtggagaa ttctccaaaa      2460
     gctttgaaat aaaaacagga gtcaggcagg gagacgggtt gtcgcctata ctttttaatt      2520
     gtgcccttga aaaagtgata agagagtgga gaaaatccga tacgaaaggc atcaaattag      2580
     gaaaccgaaa agataacatc tatgtagatt gcttggcatt cgcggatgac attgctctga      2640
     tcacagacac accggagaat gcgaaaatcc aaatagaaaa cctaactgag caagcaagaa      2700
     aagtcggttt acaaatttct ttcacaaaga cagagtttat aacgaatgta aaaaattgcc      2760
     cagagaaact actcataaat caaaacaaaa ttaagaaatt taattcattc aaatatttag      2820
     gtgagtggct atccataaac aacaatgaga aagaaagtct agaagaaaga gcaaaaaaga      2880
     tgaacatagc attccagacc accagaaaca tatacaagaa gaaggcatta tcatgggaca      2940
     ccaaaattaa acactacagc acagtggtga aaacagaggc tctgtatggt gctgaaacac      3000
     taaagctagt ccaaaaagga gggatcaata aactaatgaa aatggaaagg agactgatga      3060
     gaagcatact cggcccaagg acaacaggaa cagaatataa cagaccacga cccaacaaag      3120
     aaatctacga acatgtagag aacataatac ataccatgcg gaaaagaaga atgtcattct      3180
     ttggacattt ggcgagaatg gaaaatgaca ggctgacaaa gcaaatcttt aataaaataa      3240
     tgaagcttaa aggacaacca gtgtggttta cacagacttt aaatgacctc aaagaagcaa      3300
     acatcgacat aatggacaca cacaacagaa acttatacag gaacaaaatt cagaaagcga      3360
     tcttcaggga agaagaagag agaaaaagaa agcagcctca caacatcgag gagctccgaa      3420
     ggcagagatc agaacgcatg aaattaatgt gggcagaaag gaagaagaag caagaaagca      3480
     agaattgatg tattgattta acgtgctctg taaaagtgcc attcgaataa taaa            3534
//
ID   RTE-3_AG    repbase;    DNA;    INV; 1597 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   02-MAR-2009 (Rel. 14.02, Last updated, Version 1)
XX
DE   RTE-like non-LTR retrotransposon - a consensus sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1597
RA   Jurka J.;
RT   "RTE-like non-LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 9(2), 648-648 (2009).
XX
DR   [1] (Consensus)
XX
CC   It is likely to be 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           122..1564
FT                 /product="RTE-3_AG_1p"
FT                 /translation="MGPERLTVEMHQLIVKVWEQEELPEEWKLGVIHPVYK
FT                 KGDRLDCSNFRAITVLNAAYKILSQILFCRLAPLATNFVGSYQAGFVGGKS
FT                 TTDQIFTLRQILQKCRERQIPTHHLFIDFKAAYDTIDRKELWSIMQRYHFP
FT                 GKLIRLLEATMNGVQCKVRVSNLTSESFESHRGLRQGDGLSCLLFNIALEG
FT                 VIRGAGLDNDIRGTILYRSLQFLGFADDIDIIGRTTAKVCEAYTRLKREAA
FT                 RIGLRINATKTKYLLAGDSDHLGSSVLVDGDSLEVVKEFCYLGTVVTSDND
FT                 ISSEIRRRIVQGNRAYYGLHRLLRSRRLRARTKCEIYRTLIRPVVLYGHES
FT                 WTIRAEDANALGVFERRILRTIFGGVFEHGAWRRRMNHELAELYGEPSILT
FT                 VAKAGRIRWLGHVMRMPDSCPTKKVFDSDPQFGIRRRGAQRTRWLDQVKRD
FT                 LSEIGCLHGWEAAARDRASWRXIVDRAMSHRRALS*"
XX
SQ   Sequence 1597 BP; 388 A; 410 C; 487 G; 311 T; 1 other;
     cagcatcggc gcagacgacg aggtgccccc gccatctctg gatgagattg ccagcgccat        60
     caagcagctt aagagcaata agtctgccgg cagcgatgga ctggcggccg agctcttcaa       120
     gatggggccg gagaggctta ccgtcgaaat gcatcagctg atcgtgaaag tctgggagca       180
     ggaggaacta ccggaggagt ggaagctggg tgttattcac ccagtctaca aaaagggcga       240
     caggctggat tgctcgaatt ttcgagccat cacagtcctt aatgccgcct acaagatcct       300
     gtcccagatc ctgttctgca gacttgcgcc ccttgctaca aattttgtcg gcagctacca       360
     agctgggttt gttggaggca aatccaccac cgaccaaatt ttcactctac ggcagatcct       420
     ccagaagtgc cgagagcgcc agatcccaac gcaccacctg ttcatcgact tcaaggcggc       480
     ctacgacacc atagaccgga aggagctatg gagcatcatg cagcggtacc acttccctgg       540
     gaagttgatc cggctgttag aggccaccat gaacggggtg cagtgcaagg tgagagtatc       600
     gaacttgacg tcggaatcgt tcgaatctca caggggtctg aggcaaggtg acggactctc       660
     ctgtctgctc ttcaacatcg ccctggaagg tgtcattcga ggcgcggggc tagacaacga       720
     catccgtggc acgatcctct accggtctct ccaatttctt ggcttcgcgg atgacatcga       780
     catcatcggc aggacaacag cgaaggtgtg tgaggcgtac acccgactca aacgcgaagc       840
     agcaagaatt ggattgagaa tcaatgcgac gaagacgaag tacctgcttg ccggtgactc       900
     agaccatctg ggaagcagtg tattagttga cggcgacagt ctcgaggtag taaaggagtt       960
     ttgctatctc gggacggtcg ttacttcgga caacgacatc agcagcgaaa tccggagacg      1020
     cattgtgcag gggaatcgtg catactatgg gcttcaccga ctgctgagat ccagaagact      1080
     tcgagcccgc acgaaatgtg agatatatcg cacattgatt cgcccggtgg tcctctatgg      1140
     acacgagtcc tggaccatcc gagcggagga tgcaaacgct ctgggcgtgt ttgagcgacg      1200
     catcctccgg accatctttg gcggtgtgtt cgagcatgga gcgtggagga gaaggatgaa      1260
     ccacgagctt gctgagctgt acggcgaacc gagcatcctg acggtggcga aggctggcag      1320
     gatacgatgg ctggggcatg tcatgaggat gccggactca tgccccacca agaaggtgtt      1380
     cgacagcgat ccccagttcg gcataaggcg caggggagca cagcgaactc gatggctgga      1440
     ccaggtgaag cgagacctgt cggagatcgg gtgtctgcat ggatgggagg ctgcagccag      1500
     ggaccgagca tcctggagaa tkattgttga ccgggccatg tcacatcgac gtgctctatc      1560
     gtgagcaggc caacaagaga gagagagaga gagagag                               1597
//
ID   RTE-3_BM    repbase;    DNA;    INV; 1495 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1495
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1055-1055 (2010).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1457
FT                 /product="RTE-3_BM_1p"
FT                 /translation="MYEVREAVRSMKSGKSEGPDGIPVEVWKILGEDGYKW
FT                 LTLFFNKLLQEEVIPTEWSTSTLVPIYKNKGDVQDCGSYRGIKLMSHSMKV
FT                 WEKVIEKRLRDESEITQNQFGFMPGRGTTDAIFALRQVCEKHRDVHRNLHM
FT                 VFVDLEKAYDRVPRAVLWWALNEKGIPGKYVRLICAMYSRARTYVRTAAGN
FT                 SDEFNVAVGLHQGSALSPYLFLLVMDALTSEIQEEPPWCMLFADDIVLVGE
FT                 NGLEVQNILEKWRCKLESVGLKISRSKTEHLFCDFGGLSNFTPISLDGAPL
FT                 PVCQDFRYLGSVIQSDGELDRTVRHRIDAGWMKWRQVTGTICDSHIPLPLK
FT                 GKIYKTLIRPAVLYGSACWTTKVADERRLHAAEMRMLRWMCGVTRMDRIRN
FT                 EYVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVEGFRGRG
FT                 RPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEKTCCADPR"
XX
SQ   Sequence 1495 BP; 448 A; 256 C; 456 G; 335 T; 0 other;
     gtatgtatga agttagagaa gcagtgagaa gtatgaaaag cggaaaatcg gaaggaccag        60
     acggtatacc agtggaagta tggaagatac tgggagaaga cggatataag tggctgactt       120
     tattcttcaa taagctgctg caagaagaag tgatccctac ggaatggagc accagtacgc       180
     tggtgcccat atacaaaaat aaaggggatg tgcaagactg tggcagctat cggggaataa       240
     agcttatgtc acatagtatg aaagtttggg agaaagtgat agagaagcga ttgcgagatg       300
     aaagtgagat cacccaaaac cagttcgggt tcatgcctgg tcgcgggaca acggacgcca       360
     tatttgcact ccgccaagtg tgcgaaaaac atcgcgacgt gcacaggaat ctgcatatgg       420
     tgttcgttga tctggaaaaa gcgtacgacc gagtacctag agcagttttg tggtgggcat       480
     tgaatgagaa aggtatacct ggtaagtatg tgaggttaat ctgtgccatg tacagtcgag       540
     ccaggacgta tgtacgaacc gccgcgggga attccgacga gttcaatgtg gcagtgggct       600
     tacaccaagg gtctgcgcta agtccctatc tcttcctgct tgtgatggat gccttgacgt       660
     cggagataca ggaagagccc ccttggtgta tgctgtttgc cgatgacata gtgctcgtcg       720
     gagaaaacgg gctcgaggtc caaaacatac tggagaaatg gcgatgcaag ttggagagtg       780
     ttggcctaaa aatcagcaga tcgaaaaccg aacatctgtt ctgtgatttt ggcggtctct       840
     ccaattttac acccatttcc ctcgacggag cacctttgcc agtatgtcaa gacttccgat       900
     acctagggtc tgttatccaa agcgacggtg aactggatcg tactgtgagg cacagaattg       960
     acgcaggatg gatgaaatgg cggcaggtca cgggcaccat atgtgactcg cacatccctc      1020
     ttcccctaaa agggaagata tataagacct taataaggcc tgccgtcttg tatggatcag      1080
     cttgttggac aacgaaagtg gcggatgaaa ggcgattgca tgcagcagag atgcgaatgt      1140
     tgcgatggat gtgtggagta acgagaatgg atagaatacg gaatgaatat gttagaggaa      1200
     gtctgaaagt ggcacctgtg acagagaagc tgaggagtgc gcgtttggga tggtatggac      1260
     atgtgatgag acgaaatgaa aatgaggttg ttaagagagt gttaactatg aatgtggaag      1320
     gatttagagg aagaggtaga cctaagaaga aatggatgga ttgcgtgaaa gacgatatgg      1380
     gtaggagggg agtgagcgaa gaaatggtat atgatagaag agtatggaag gagaaaacat      1440
     gttgcgccga ccccaggtga ctgggagaag ggcaggataa tgatgatgat gatga           1495
//
ID   RTE-3_BTa   repbase;    DNA;    INV; 3232 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.08, Created)
DT   17-MAY-2018 (Rel. 23.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3232
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(8), 953-953 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           338..3208
FT                 /product="RTE-3_BTa_1p"
FT                 /translation="MVFGTWNVQGISNKLTEVVSEVKKYNVDVAVLTETKK
FT                 KGTGSENLGCYDLFYSGVSKDQRAQQGVAILIRKSLRPSITTWEAVDQRII
FT                 RMHLTLHGHKVALLGVYGVNDDAPVNLKDQFFEQLNDEVLRVGRTREVIIM
FT                 GDLNGRTGRRNGSKVVGPFGEEAMNDNGARIIDMCEQNELKILNGFYQHRD
FT                 IHKYTWVQQTRGLKSIIDYAVTRQTSTMKVQQVRVCRGFSCGSDHHFLKAE
FT                 IAFPVKYGLQRNTLQHQKCQPQGTKIEQVHYNIDSLQHESVKALYRKRLDE
FT                 KLGVETFDTAEELYQFIKSCIHSAAKEALGMCNESKDVQKPYWWDKEVEEV
FT                 IEEKRRKYHDYLASRTADTRGAYRKAQARVRLLITRKKNESWETNCSRIDT
FT                 YLGGRKSAESWKLIKGLRRDMKRDIISPITISQLDEHFNKLLTEGRPEFQT
FT                 GNAENIVEDHSMEIRVEEVVKAIRELMNGRAPGPGNIPAELIKCGTGKLVN
FT                 HLRDLLQKCIDGDDIPKEWKEAWITASHKKGRKDDCGNYRGLAVTGTISKI
FT                 YGKVLKAKIEEEWTPFEAEEQAGFRAGRSTADHLFCVTQLTEKKRIVGQEL
FT                 HLVFLDIEKAYDSIPLVKLWEVLEETGFSKGLIGAVKQFYRGAFARIKCQG
FT                 RLSDGFFVTKGLKQGCCLSPTLFKIYLEHVLKEWKRKCAGMGVPLNDQETL
FT                 FTLCFADDQVVISQDHDDAEYMTRKLVEEYRKWGLEVSVRKTKKMSVGGAQ
FT                 QSIVLEDGQHIESCEQYKYLGVNLTSDGKLDQAIRDRNLLGRKAIAMLNGI
FT                 LWDQRISKDNKKRIYNSVVKPIITYGSEVWQLKKRTQEMLKATEMDFWRRS
FT                 AGISRRERVRNERVREIMGVEGTIVHDIMTKQLVWYGHVQRMADTRLPKKV
FT                 LEWVPPGRRRRGRPAKRWVEGIHEEMERCQLPEDLYHDRFLWRIGVAERPS
FT                 AP"
XX
SQ   Sequence 3232 BP; 979 A; 604 C; 940 G; 709 T; 0 other;
     ccgtatgggg gactgtactc agtactgtca caggtttagc aagcctgcgg accccagctg        60
     gtagcccctg ccttaaaggg gggtgaagat ggtcaccggc ttcatggcgt atgaaccact       120
     catcagaggg gcagacaggg ctcatagctg tggtgaaagc agcctgtcta ggagacggta       180
     ctccaaaatc aaaccctggt cctccaggtt gggggttggg gcatcgggct aactccccga       240
     tacccggaaa aaacttaatg ttaaaaagcc taataaagat agcctcggtg ataatggaaa       300
     aaaacggatt ttgcgacaca aactacggaa aaggacaatg gtttttggga catggaatgt       360
     acagggcatt tctaataaat tgacagaggt tgtatcggag gtaaaaaagt ataatgtaga       420
     tgtcgccgtg ttaacagaaa cgaaaaagaa aggcacagga tcagaaaact taggatgtta       480
     tgatctgttc tatagtggtg tcagtaaaga tcaacgcgca cagcaaggag tcgccatact       540
     tatccggaaa agtttgcgtc cgtctataac tacttgggaa gcagtagacc agcggatcat       600
     cagaatgcat cttacactgc atggtcacaa ggtggccctg ttaggagtat atggtgtgaa       660
     tgatgatgct cccgtcaatc taaaggatca gttctttgag caactcaacg acgaggttct       720
     gagggttgga aggacaaggg aggtcattat catgggagat ttgaatggta gaaccggacg       780
     aaggaatggt tctaaagttg ttggaccttt cggtgaagag gcgatgaatg acaacggtgc       840
     acgcattatt gatatgtgtg aacaaaacga gttgaaaata ctgaacggat tctaccaaca       900
     tcgagatatc cataagtaca cgtgggttca gcaaactcgg gggctgaagt caatcatcga       960
     ctacgcggtc accaggcaaa cgagtaccat gaaggttcaa caagtaagag tttgccgggg      1020
     gttctcctgt ggtagtgatc accattttct caaggcggag attgcatttc cggttaagta      1080
     tgggctgcag aggaatacct tgcaacatca gaagtgccag ccacaaggaa cgaagatcga      1140
     acaagtgcac tacaacatcg atagcttaca gcatgaaagc gtgaaagcgc tctacaggaa      1200
     gcggctggat gagaaactgg gagtagaaac tttcgatact gcagaagagt tgtaccagtt      1260
     catcaaaagt tgcatacatt cagctgcgaa ggaagccctg ggtatgtgta atgagagcaa      1320
     ggatgtacag aaaccctact ggtgggacaa agaggtagag gaggtaattg aagaaaagcg      1380
     taggaagtac catgattatc tggcttctag gactgcagac acccgcggcg cgtataggaa      1440
     agcccaggcg agggttcgtc ttttaatcac caggaagaaa aacgagtctt gggagaccaa      1500
     ctgctcaagg attgacacat acctgggggg aaggaagagt gctgagagct ggaagctgat      1560
     caaaggccta agaagggaca tgaaacggga cattatatct ccgataacaa tctcacagct      1620
     tgacgaacat tttaataaat tattgacgga aggacgacca gagtttcaaa cggggaatgc      1680
     tgaaaatata gtcgaggatc actcaatgga aattcgagtt gaggaggtgg tcaaagcaat      1740
     cagggaattg atgaatggaa gagctcctgg gccaggaaac attccagccg agttaattaa      1800
     atgtgggact ggcaagttgg ttaaccatct cagggatttg ctgcagaagt gcattgacgg      1860
     tgatgacatc ccgaaagaat ggaaagaggc ctggataaca gcgtcgcata aaaaaggaag      1920
     gaaggatgac tgtgggaact acagagggtt agcggtgaca ggaacgataa gtaaaattta      1980
     tggaaaagtg ctgaaagcga agatcgaaga ggagtggacc ccgttcgagg cggaggagca      2040
     agcaggtttt agggctggtc ggtctaccgc tgatcatctg ttctgtgtta cccagttaac      2100
     cgaaaagaag agaattgttg gccaggagct tcatttagtg tttttggata ttgaaaaggc      2160
     ttatgatagt attcctcttg tgaaactctg ggaagtccta gaagaaactg gttttagtaa      2220
     aggacttatt ggggcagtca agcagtttta tcggggggct tttgctagaa ttaagtgcca      2280
     aggaaggctt tcagacggtt tttttgtcac caaggggctt aagcagggat gttgtctgtc      2340
     accgacgctg tttaagatat atctagagca cgttctgaag gaatggaaaa gaaagtgtgc      2400
     cggcatgggc gtccctctaa atgaccaaga aacactgttc acgctatgct ttgctgacga      2460
     ccaggtagtc ataagtcaag atcacgatga cgcggagtat atgacccgga agttggtgga      2520
     ggagtaccgc aaatggggcc tcgaggttag tgtccgtaag acaaaaaaga tgtcagtcgg      2580
     aggcgctcag caaagcatag tcctggagga tggtcaacat atagaaagtt gcgaacaata      2640
     caagtacctg ggggtgaacc tgacttcgga tgggaagctg gatcaggcca ttcgggaccg      2700
     taatcttcta ggaaggaaag ccatcgccat gcttaatggg atcctttggg accaaaggat      2760
     ttccaaagac aacaagaaga ggatttataa ctcggttgtc aagcctatta tcacctatgg      2820
     cagtgaagtg tggcagttga agaagcggac ccaagaaatg ctcaaggcga ccgagatgga      2880
     tttctggcga agatcggctg gaatctcgag gagagaacgt gtcaggaatg aacgtgtccg      2940
     agagataatg ggcgttgagg ggacgattgt gcacgatatc atgaccaagc aattggtatg      3000
     gtatgggcat gtgcagagaa tggctgatac caggttgccg aagaaggtgt tggagtgggt      3060
     ccccccaggt aggcgacgga gagggcgtcc agccaaacgg tgggtagagg gcatccatga      3120
     agagatggag agatgccagc ttccggagga tctctaccat gacagattcc tgtggagaat      3180
     aggcgtcgca gagcgcccta gcgcgccgta aaagcggctc atacatacat ac              3232
//
ID   RTE-3_CQ    repbase;    DNA;    INV; 4043 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4043
RA   Kojima K.K. and Jurka J.;
RT   "RTE non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 613-613 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with ~98%
CC   identity. ~80% identical to RTE-2_CPi.
XX
FH   Key           Location/Qualifiers
FT   CDS           933..4016
FT                 /product="RTE-3_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVLRRDRGLVQATRTRRKTPVQEAHDASRTNRHGTGH
FT                 HMRSHDWKLGTWNCRSLKFDGSIRILSDILRVRKFSIVALQEVGWIGAEEV
FT                 QAYPRIGCTIYQSRGENKRLGTAFIVLGEMRDRVIGWTPLTDRMCVLRIKG
FT                 RFFNISIINVHSPHSGSEDDDKDAFYEQLNWTYNSCPKHDVKIVIGDFNAQ
FT                 VGQEEEFRPVIGKFSAHVRTNENGLRLIDFATSKNMAVRSTCFQHNLRDKY
FT                 TWRSPQGTESQIDHVVIDGRHFSDIIDVRTYRGANVDSDHYLVMVKMRQRL
FT                 SLAKSVRYRRPPRLDLERLKLPEVASRYAHSLEAALPGEGELLEAPLEDCW
FT                 RSVKAAITNAAESTIGFVERGRRNDWFDEECRAILEEKNAARRAMLQYNLR
FT                 DYEEAYGQKRRQQHQLFRAKVRHQEELEFEDMEQLHRSNETRKFYKKLNGS
FT                 RNGFTPRVEMCRDKNGAILTNEREVIDRWKQHFDEHLNGAEAEAGVQGGRR
FT                 EDFIGTAGEGEEPVPTMREVKDAIKKLKNNKAAGKDGIGAELIKMGPEKLA
FT                 SCLHRLIVRVWESEQLPEEWKEGVICPIYKKGDKLDCENYRAITILNAAYK
FT                 VFSQILFSRLSPIAEGFVGSYQAGFVMGRSTTDQIFTVRQILQKCREYQVP
FT                 THHLFIDFKAAYDSVDREELWKIMDENGFPGKLIRLIKMTMDGARCCVKIS
FT                 GAESDSFTSLGGLRQGDGISCLCFNVVLEGVMRRAGFNMRGTIFSKSNQFI
FT                 CFADDMDIVGRTFKAVADAYTDLKREAEKVGLRVNVAKTKYLLAGGTESLR
FT                 ARIGPSVTIDGDEFEVVEEFVYLGSLVTSDNSCSREIRRRIIAGSRAYFGL
FT                 HKSLRSRKFSLHTKCSIYKSLIRPVVLYGHETWTMLEEDLRALSVFERRVL
FT                 RTIFGGVYENDGWRRRMNHELAQLYNEPSIRKVAKAGRLQWAGHVARMPER
FT                 ADHLSQRNQKINPAKLVFVSEPVGTRRRGVQRARWVDQVESDLESVGAPRN
FT                 WRNAAMDRACWRRIVQQAKLMV"
XX
SQ   Sequence 4043 BP; 1039 A; 993 C; 1216 G; 795 T; 0 other;
     tgtgtgtgcg ccgtgcacat cggtattgtt tttcgtaccg ttcccgcgaa agtgcaaaat        60
     ttacacgaaa atacgcgtta gtggggtgtg aaattcattg catccgtgtt ctgaacccgt       120
     ctcctggccc gggaaagtga tagtccgtgt tttacgaccg cgagtgagac aaatcaatca       180
     ccagatttga ccgaatatcg cgttccgcca cgggcaattg aaaaaaagta caaagaactg       240
     ctaaggcatc gtcgtcgtcg tcgcgatcga tggtcgttgt attgtgtcgc gcggcgtgtg       300
     gaagtgtacc gcgaagacca tactgacgcg tgtcgtcgtc gtcctcgtca ctgtgtctgt       360
     tgctacgaga gtcgtgtata gaagagaagc cgttggtgca cggtggggtg aattgctagg       420
     aaagctacag aaaaaaaaag tgctgcaaag ttttttgggt gaaattaaaa agaaggaaaa       480
     atcaagaagc gcaaccctgc tgcatacaca gccccccccc cctcccctct agttccgttt       540
     ctgggcgtct gcaccccatg ttaggggcgg cccaaacgga ctaggtggtc gattccttct       600
     atccgtgagc ggctgttccc cacgttaggg gcggctcgaa agaagtggcc gacacccccc       660
     cccccccccc cccacccttc tttgagcgtc tgttccccag gttaggggcg gctcaaagaa       720
     accggtgtcc tgctctatcg tcgaggtaag cgtctgttct ccaggttagg ggcggcttac       780
     agcagataga gttcggaccc cccaccccct ccccccatcg agcgtctgtt ccccaggtta       840
     ggggcggctc gaaacagcgt ctgtacccca ggttaggggc ggctgagtaa aagtccttgt       900
     gtcggcgtgg gactgtaaac agtaccggca cgatggtcct ccggcgagac agggggttgg       960
     tgcaggccac acgaacccgc cgtaaaacac cagtgcagga agcacacgat gcgagccgga      1020
     ccaatcggca cggaactgga catcatatga ggtcccacga ttggaagctc gggacgtgga      1080
     attgtaggtc tctcaaattt gacgggagta tccgcatact ttccgacata ttgagggtcc      1140
     gcaagttcag catcgtagcg ctgcaggagg ttggctggat aggcgcggaa gaggtacaag      1200
     cgtacccaag gattggctgt acaatctacc agagccgcgg cgaaaacaag aggctgggga      1260
     cagcctttat agtgctgggc gaaatgcgcg atcgcgtgat tgggtggacc ccgctcaccg      1320
     accgaatgtg cgtgctgagg attaaaggcc gtttcttcaa cattagcatc ataaacgtgc      1380
     acagcccgca ctcaggaagc gaagatgacg acaaggacgc attttacgag cagctgaact      1440
     ggacgtacaa cagctgccca aaacatgacg tcaaaatcgt catcggagat tttaacgctc      1500
     aggttggcca ggaggaggaa ttcagaccgg tgataggaaa gttcagcgcc cacgtacgca      1560
     cgaacgaaaa cggcctgcga ctgatcgact tcgccacctc caaaaacatg gccgtacgaa      1620
     gtacctgctt ccagcacaac ctccgagaca agtacacctg gagatcaccg caaggaacgg      1680
     aatcacaaat cgaccacgtc gtaatcgacg gtagacactt ttccgacatc atcgacgtca      1740
     ggacctatcg cggcgccaac gtcgactcgg accactatct ggtgatggtg aaaatgcgcc      1800
     aacgactttc cctggcgaaa agcgttcggt accgccgccc tccgcggttg gatctggagc      1860
     ggcttaagtt accggaagtc gcatcccggt acgcgcattc gctggaggct gcgttgccag      1920
     gggagggtga gctgttggaa gctcccctcg aggactgctg gaggagcgtc aaggcagcca      1980
     tcaccaacgc agcggaaagc accatcggat ttgtggaacg aggacgacgg aacgattggt      2040
     tcgacgagga gtgtcgagcg attttggagg agaagaatgc agcacggagg gcaatgctgc      2100
     agtacaatct ccgtgattac gaggaggcgt atggacagaa gcgaaggcag cagcaccagc      2160
     tcttccgagc aaaagtgcgc caccaggaag agttggagtt tgaggacatg gagcagctgc      2220
     atcgctcaaa cgaaacgcgc aagttctaca agaagctcaa cggatcccga aacggcttca      2280
     cgccgcgagt cgaaatgtgc cgggataaaa atggagctat cttgacgaac gagcgtgagg      2340
     tgattgacag gtggaagcag cacttcgatg aacacctgaa tggcgcagaa gcagaggcag      2400
     gggtccaagg cggcaggaga gaggacttca tcggtacagc gggagaagga gaggagccag      2460
     ttcccacgat gagggaagtt aaggatgcca tcaagaagct gaagaacaac aaagcagcgg      2520
     gtaaggatgg tatcggtgct gaactcatca agatgggccc ggagaagctg gcgtcctgtc      2580
     tgcaccgact gatagtcagg gtctgggagt cagaacagct accggaggag tggaaagagg      2640
     gagtaatatg cccgatctac aagaaggggg acaagttaga ttgtgagaac taccgtgcca      2700
     tcacaatcct caacgcggcc tacaaagtgt tctcccagat cctcttcagc cgcctatcgc      2760
     caatagcgga aggttttgtt ggaagttatc aagccggatt cgtcatgggg agatcaacaa      2820
     ccgaccaaat cttcactgtg cgacaaatcc tccaaaagtg tcgcgagtac caagtcccca      2880
     cgcaccacct tttcatcgac ttcaaagccg cgtacgactc agtcgatcgc gaagagctat      2940
     ggaaaattat ggacgagaac ggttttcccg ggaagctgat cagactgatc aagatgacga      3000
     tggatggggc taggtgttgt gtgaagatat cgggtgcgga atcggactcg tttacttcac      3060
     ttggggggct tcggcaaggc gatgggatct cttgtctttg tttcaatgtc gtgctagaag      3120
     gtgttatgag acgagcgggc ttcaatatgc ggggcacgat cttcagcaag tccaaccagt      3180
     tcatctgctt cgccgacgac atggacattg ttggcagaac gttcaaggcg gttgcggatg      3240
     cgtacaccga cttgaagcgg gaagcagaga aggttgggct aagggtgaat gtggcgaaga      3300
     caaagtacct gctggcagga ggaaccgagt cccttagggc tcgcattgga ccaagcgtta      3360
     caatcgacgg ggacgaattc gaggtagtgg aggagtttgt atacctcgga tcgttggtaa      3420
     cgtcggacaa cagctgcagc agggaaattc ggaggcgcat catcgctgga agtcgtgcct      3480
     atttcggtct tcacaagagc ctaaggtccc ggaaattctc cctacatacg aagtgttcca      3540
     tctacaagtc gctgataaga ccggtcgtcc tctacgggca cgagacgtgg acaatgctcg      3600
     aagaggactt acgagcgcta agcgtcttcg aacgtcgagt gctaaggacc atctttggcg      3660
     gcgtatatga gaacgacgga tggcggcgga gaatgaacca cgaacttgca caactctaca      3720
     acgaaccaag catccggaaa gtcgcgaagg ctggacggtt gcagtgggcg ggtcatgttg      3780
     caaggatgcc ggaacgagcc gaccacttga gccaacggaa ccagaagatc aatcctgcga      3840
     agttggtgtt tgtgtcggag ccggtaggaa caagacgtag gggggtgcaa cgtgcgaggt      3900
     gggtggacca agtggagagc gatttagaaa gtgtgggtgc gccgcgaaat tggagaaatg      3960
     cagccatgga ccgagcttgt tggcggagaa tcgtgcagca ggccaagcta atggtgtagc      4020
     gccaataaaa gtaaagtaag taa                                              4043
//
ID   RTE-3_DF    repbase;    DNA;    INV; 3266 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3266
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 992-992 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(322..1014,936..3236)
FT                 /product="RTE-3_DF_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTTIRISKRTRIGQWNVRTLMEPSRLAQFELEMDKLQ
FT                 ISIAGISEMRWKGSGATTTSNGNSVLHSGNNDGGRNGVGIYVSKRYKQTLI
FT                 SWNPISDRIIMARFRCSARHITIVQCYAPTEDASDDIKDDFYNSLTSTLTR
FT                 IQRGDIKILMGDFNAKIGPNNTGLEPVMGRHGVGSRSNNGDRLIDLGQTSQ
FT                 MVIGGTVFPHKEVHKYTWTSPNGLTRNQIDHICISKNGGARIHMDVPKWSH
FT                 KKPDRPYLHKQKWRSSMKDVRNKRGASIDSDHELVVGELSIKLRRKRTVNR
FT                 TTNRPPPLNVHRLGDPTLSARMATTLREQLMPLQPTHPWEQTCRSLRNTAE
FT                 ELLGTRQPRRIDWISTETWNLINRRNNLKQRADHDCRARAEHSELCRMVKK
FT                 SARNDKRALLNRLADSAESAANANNMRLLYQIIGKLSGCHQIRQTQPVRDS
FT                 DGALLTDDDAQIQRWRRHFMEISYTEHPSSPHEEEPRSIEPNTTNTRISPT
FT                 PPTVREIRDAIRKLKSNKAAGDDGIPAELLQTDSQLIAETLHPHFEAIWDN
FT                 ERVPKAWKKGIIIKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLMDK
FT                 IEPTLRDEQGGFRPHRSCVDQANTLRVITEQAVEWRSPLYLLFIDFQKAFD
FT                 SVDRVAIWRALARKGVPTNIINIVKAMYDDADLAVLHNGKISAPFQTNIGV
FT                 KQGCPLSPLLFNLVIDEIMREVSKSRRGIIWSFTRHLEDLDYADDICLLSH
FT                 RLTDIQAKADDLESRAKSVGLNINAAKTKAMRVNNTNQGNITISGKSVDFV
FT                 DSFVYLGTLITGNGGAEQDMENRLSKARSAFGRLHRIWRNTQLNRRSKLRI
FT                 FNACVKSVLLYGSETWLTSQRMLMKLQAFVNKCLRIICGIFWPARINNNDL
FT                 WHDTGEVPIHQQIRKKKWNWIGHALRKNHDSIARTALDWNPQGSRRVGRPK
FT                 LTWRRTTLQDMSRINTSWDSIKQTAPNRVRWRSLVEALSSQEE"
XX
SQ   Sequence 3266 BP; 1083 A; 831 C; 769 G; 577 T; 6 other;
     gggggcctca tagcctagca gktagtgtac tagctcgcta ascgtgaggt cgtgggttca        60
     atccccactc atgactcsct tatgacctcg tacttttgat tctttkatgc gtgagctgga       120
     gcaattggaa aaattctttg gamatttttc agtttgcaac agcgcacgtg ccaaagattc       180
     gaaagcggca cgcccagtgg ccgataaggt ggcagcccca ccaatgggat aagtcgcata       240
     cggccaatca ccggatcgat cgaaaacaca aacgattamc gaaaacgaag caagcgaaat       300
     gaatcacacc cccccaaccc gatgacgacc atccgcatat cgaaacggac acgaattgga       360
     caatggaacg tgaggactct aatggaacca tccagactgg cgcagtttga actggagatg       420
     gacaaattgc agatctcaat tgctggcatt agtgagatga gatggaaagg aagtggagca       480
     acaacaacat caaatggcaa ttcagtgttg catagcggaa acaatgatgg cggcaggaac       540
     ggagtaggga tttatgtgtc caaaagatac aaacagacac taatctcctg gaacccgata       600
     tccgatagaa tcatcatggc cagattccga tgcagcgcta gacacatcac catcgtgcaa       660
     tgctatgccc cgacggaaga cgccagcgat gacatcaaag acgacttcta caactccctc       720
     acatccacac tcacaaggat ccaaagaggc gacatcaaaa ttctcatggg tgacttcaac       780
     gctaagatcg gccccaacaa caccggactg gaaccagtca tgggtcggca cggcgttggc       840
     tcacgtagca ataatggaga taggctgatc gacttaggcc agacatccca aatggtcatt       900
     ggaggcactg tgttcccaca taaggaggta cataaataca catggacgtc cccaaatggt       960
     ctcacaagaa accagataga ccatatctgc ataagcaaaa atggaggagc tcgatgaagg      1020
     atgtacgcaa caagagaggc gcgtcaattg acagtgacca cgaattagta gtcggagagc      1080
     tctcaatcaa gctcagacga aaacgcactg tcaatagaac cacaaacaga ccaccaccac      1140
     taaacgtaca tcgtcttggc gaccccaccc tatccgccag aatggcaaca acgctacgag      1200
     aacaactgat gccactacaa ccaacgcacc catgggaaca aacatgcaga tcactgagga      1260
     acaccgctga ggagttgctc ggcaccaggc aaccaaggcg catcgactgg atatcaactg      1320
     agacatggaa ccttatcaac agacggaata acctcaagca aagagctgac cacgactgta      1380
     gagcacgcgc ggaacacagc gagctatgca ggatggtgaa gaaatcagcc agaaacgaca      1440
     agagagccct attgaacaga ctcgcagata gtgcggaaag tgcagccaat gccaacaaca      1500
     tgcgcttgct gtatcaaatt attgggaaat tatccggatg tcaccaaata aggcaaaccc      1560
     agccagtgcg agattccgac ggtgcacttc tcacggacga cgatgcccaa atccagagat      1620
     ggcgacgaca cttcatggaa attagctaca ctgaacaccc aagcagccca catgaggaag      1680
     aacccagaag tatcgagccc aacaccacca acaccaggat ctcgcccacg cctcccactg      1740
     tgagagaaat acgagatgcg atcaggaaat tgaagagcaa caaagcagcc ggagatgacg      1800
     gtatacccgc cgaacttctc cagactgact ctcaactaat agccgaaaca ctgcatccgc      1860
     acttcgaagc aatatgggat aacgagcgag ttcctaaagc ctggaaaaaa gggatcatta      1920
     tcaaattacc taagaaagga gacctcagtg actgcaacaa ttggcgagga attaccttac      1980
     tgaacacaag ttataagatc ttagctaccc tgctgaacga gcgcctgatg gacaagattg      2040
     agccaacact tcgggatgaa caaggaggat ttagaccaca caggagctgc gtagaccaag      2100
     ccaacaccct acgcgtaata accgaacaag ctgtggaatg gcgttcgccg ctgtacctcc      2160
     tgttcatcga cttccagaag gccttcgact cagtagacag agtggcgata tggcgggcac      2220
     ttgcaaggaa gggagtgcca acaaacatca taaacatagt gaaagctatg tacgatgatg      2280
     cggacttggc ggtactgcac aacggaaaaa ttagtgcacc cttccagaca aacattggcg      2340
     tcaagcaagg ttgcccccta tcgccgctcc tgttcaacct ggtaatagat gaaatcatga      2400
     gagaagtgag caagtccaga cgcgggatca tatggagctt cacccgacac ctggaagacc      2460
     tggactacgc agacgacatt tgcctcctgt ctcatagact cacggatatc caagccaaag      2520
     cagatgacct cgaaagtcga gcaaaatcag tgggtctaaa catcaatgcc gccaaaacaa      2580
     aagcaatgcg agtcaacaac accaatcaag gcaacatcac cattagcggc aaaagcgttg      2640
     acttcgtcga tagctttgtc taccttggca ccctaataac agggaatgga ggagccgagc      2700
     aagatatgga gaaccgacta agcaaagcta gatcggcatt tggaagattg caccgcatct      2760
     ggagaaacac gcagttaaat agaagatcaa aactgcgaat cttcaatgcg tgtgtcaaat      2820
     cagtactgtt gtacggctca gaaacgtggc tgacctccca acgaatgttg atgaaactac      2880
     aagcattcgt caacaaatgc ctcagaatta tatgcggcat attctggcct gccagaataa      2940
     acaacaatga tctgtggcat gacacaggag aggtccccat ccaccaacaa ataaggaaga      3000
     aaaaatggaa ctggattggc cacgctctta ggaaaaacca cgacagcatc gctaggacag      3060
     cgctagattg gaacccacag ggaagtagga gagtgggacg ccccaagctg acctggcgcc      3120
     ggacaacact acaggacatg tcccggataa acacctcctg ggactccata aaacagaccg      3180
     cgccgaacag agtccgatgg agatcgcttg tagaagccct aagctcccaa gaggagtaac      3240
     aaggaaaaaa aaaaaaaaaa aaaaaa                                           3266
//
ID   RTE-3_DPl   repbase;    DNA;    INV; 3170 BP.
XX
AC   .
XX
DT   27-DEC-2011 (Rel. 23.01, Created)
DT   24-NOV-2021 (Rel. 26.11, Last updated, Version 2)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-3170
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 127-127 (2018).
XX
RN   [2]
RP   1-3170
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (24-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           192..3149
FT                 /product="RTE-3_DPl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MGTTKKPRPPVLGGPAILGHGGDHGNGGTGGAKNLRA
FT                 TGGHQNKLTLATYNGRTLRLDEHLAQLEEELGKIRWHILGLSEVRRSGEDT
FT                 VTLESGHLMYFREGDQQSQGGVGFLVNKSLSDSVVEMSSVSNRVAYLILKL
FT                 TERYSLKVVQVYAPTSTHSDGEVEEMFDDISKALHYTTKTHYNVVMGDFNA
FT                 KVGVRTCNESVVGSHGFGSRNHRGQMLVNFLEREGLFLMNSFFKKQPQRKW
FT                 TWQSPDTMTKNEIDFIMTDKKHIFRDVSVINRFNTGSDHRLVRGSLNINFK
FT                 AERVRLMKSRLRPTLLHSIIRSETFQSNLENRFAAVETTTDVNQNLENVVR
FT                 ILREEGTSFSATQRRGRKSKLSEETLGLMKERRENPPVTSSERRILNQKIR
FT                 RHVRHDLRCSNTLSIERAIEQNRGSKVFVQSLGRSHLTKLTTASGEVVASM
FT                 PAVLSEVEDFYSRLYASQTSRPDPVCEDPRATLTRHFSEDLPEVSIGEIEI
FT                 ALGQLKNGKAPGEDGITTELLNAGAKPVLRELQKLFNSVLFEGRTPEAWSR
FT                 SVVILFFKKGDKSLLKNYRPISLLSHVYKLFSRVITNRLARRLDEFQPPEQ
FT                 AGFRSGYGTIDHIHTVRQIIQKTEEYNQPLCLAFVDYEKAFDSIETWSVLE
FT                 SLQRCQVDWRYIQVIRCLYEAATMSVQVQNQQTSPIPLHRGVRQGDVISPK
FT                 LFTNAMEDMFKTLRWKGRGININGEHISHLRFADDIVIMAETLQDLQQMLD
FT                 DLADSSIRIGLRMNLDKTKVMFNEHVLPEPIAVHGVVLEVVQKYVYLGQVL
FT                 QLGRNNFEDEVSRRVQLGWAAFGKLRRVLTSSIPQCLKTKVFNQCVLPVMT
FT                 YGAETWTLTVRLVHQLKVAQRAMERAMLGVSLRDRIRNEVIRQRTKVIDIA
FT                 HRISKLKWQWAGHISRRTDNRWGKRVLEWRPRLGKRSVGRPQARWSDDLRK
FT                 MAGRSWMRVAENRSQWRAIGEAYVQQWTSMG"
XX
SQ   Sequence 3170 BP; 882 A; 742 C; 855 G; 691 T; 0 other;
     gccgtgtagt gacggcagat tagaatacag gtgtcactac ccccttctct tcccgcgggt        60
     gtcgtaagag ccgactaagg gagtatacat tttacagaga ccgggcagca gcggtctctg       120
     aaaaccgaac atcattcaac tgcgatcgcc aacccgcctg cccagcgtgg cgattatggg       180
     caagtcatcc aatgggtacg acaaaaaagc cacggccccc agttctcggc ggtcccgcta       240
     ttcttggtca tggtggcgac catggtaacg gcgggacggg gggtgcgaag aatctccggg       300
     ctacgggagg ccaccaaaat aaactgaccc tggcgacgta caacggacgc acgttacggc       360
     ttgacgagca tctggcgcaa ctcgaggagg aacttgggaa gattaggtgg cacatactag       420
     ggttaagtga agtccgaaga tcgggggagg acaccgtaac tcttgaatcg ggccacctaa       480
     tgtactttcg cgagggagac caacaatccc aaggtggcgt ggggtttttg gtaaataagt       540
     ccctatccga tagcgttgtg gaaatgtcta gtgtatcgaa cagggtagcg tacctcatac       600
     taaagctcac cgagagatac agcctcaagg tggtgcaagt gtacgctccg acctcgacac       660
     actcggatgg tgaagtggaa gaaatgttcg atgatatatc gaaggccctc cactacacta       720
     ctaagactca ctacaacgtt gttatgggag actttaacgc taaagtggga gtacggactt       780
     gcaacgaatc ggtagtagga tcccatggat ttggaagtag gaatcatagg gggcaaatgc       840
     tcgttaactt cctggaacga gagggtctct tcttgatgaa ctcgttcttc aagaaacagc       900
     cccaaaggaa gtggacgtgg caaagccccg atactatgac taaaaatgag atcgatttca       960
     tcatgacgga caagaaacac atattcagag acgtctccgt gatcaacagg tttaataccg      1020
     gtagtgatca ccgactggta cgaggctctc tgaatatcaa ctttaaggct gaacgtgtcc      1080
     gtctgatgaa atccaggctc cgacctaccc tgctccattc cataataaga tccgaaacgt      1140
     tccagtcaaa tctggagaac cgattcgctg ccgtggaaac cacaacggac gtaaaccaaa      1200
     acctcgagaa tgtggttcgg atcctcaggg aagagggtac gagtttcagt gcaacgcagc      1260
     gtagaggcag gaagtccaaa ctttctgagg agactctagg gctaatgaag gaacgacgtg      1320
     aaaacccacc cgtcacttcg tcggaaaggc ggattctaaa ccaaaagatc cgtagacacg      1380
     tacgacacga tctccggtgc tctaatactc tttcgattga gagagcaatc gagcagaacc      1440
     gggggtcaaa agtgttcgta caatctcttg gaagaagcca cctgacgaag ttgactactg      1500
     caagtggaga agtcgttgct tcaatgccgg cagtcctttc agaagtggaa gacttctata      1560
     gccggctcta cgcatcgcag acatctcggc ctgatcccgt gtgtgaggat cctagagcca      1620
     ctttaacacg ccacttttcc gaagacctgc cagaagtcag tattggcgaa attgagatcg      1680
     ctcttgggca gcttaaaaat ggaaaagccc ctggagagga cggcataaca acagaattgt      1740
     tgaatgccgg agctaaaccc gtactgaggg agctccaaaa gctgttcaat tctgtcctct      1800
     tcgaagggag aactccggag gcgtggagta ggagtgtggt catcctgttc ttcaaaaagg      1860
     gagacaaatc cctgctgaag aactatcgac ccatttccct gctaagccac gtatataagc      1920
     tgttttcaag agtgatcaca aatcgtcttg cgcgaagact cgacgaattc caaccaccgg      1980
     aacaggctgg gtttcggagc ggatacggca ccatagacca cattcacacg gtgcggcaga      2040
     ttatacagaa gaccgaagag tataatcagc ccctttgtct agcattcgtg gactatgaga      2100
     aagcttttga ctcgattgaa acttggtctg ttctggagtc cctgcaacgt tgccaagttg      2160
     attggcggta tatccaagtg ataagatgtc tctacgaagc cgccaccatg tccgtccaag      2220
     tacagaatca gcaaacaagt cccataccgt tgcatcgagg agtgagacag ggggacgtta      2280
     tctccccgaa actgttcaca aatgcaatgg aggatatgtt taagacgctg cgctggaaag      2340
     gacgaggtat taacattaat ggcgaacaca tctctcactt gcgatttgca gacgacatcg      2400
     tcattatggc agaaacgctg caggacctac aacagatgct tgatgacctg gctgactctt      2460
     ctatacgcat cggcctacgg atgaacttgg acaaaaccaa ggtcatgttc aatgaacatg      2520
     ttctaccgga accgattgca gtccacggtg tcgttctcga agttgttcaa aaatatgtct      2580
     atctggggca agtattgcag ttgggtagaa acaatttcga ggacgaggtg agtagaagag      2640
     ttcagctggg ttgggcagcg tttgggaagt tacgccgagt cttaacatcg tcgatcccac      2700
     aatgcctaaa gacgaaagtc ttcaatcagt gcgtcctacc cgtaatgact tacggagccg      2760
     aaacgtggac actaacggta cggctagttc accaactcaa agtcgctcag cgagctatgg      2820
     aaagggctat gctcggagtt tctctgaggg atcgcatcag aaatgaggtg attcggcaga      2880
     gaaccaaggt catcgacata gcccaccgga ttagcaagct gaagtggcag tgggctggcc      2940
     atattagccg cagaaccgac aaccgttggg gtaaacgagt tcttgagtgg agaccgcgtc      3000
     tcggcaaacg tagtgtagga cgtcctcagg caaggtggag tgacgatttg cgcaagatgg      3060
     ctggcaggag ctggatgcga gtagccgaaa atagatctca gtggcgtgca attggagagg      3120
     cctatgtcca gcagtggacc agtatgggct gatgatgatg atgatgatga                 3170
//
ID   RTE-3_Hmel  repbase;    DNA;    INV; 3252 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3252
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           147..3230
FT                 /product="RTE-3_Hmel_1p"
FT                 /translation="LPXFTYPTPSIFLSXRFFPTKGFWRSDGSRSXKTANR
FT                 HYMERTXNRLGTARASPQNDAQAHRPTPATSGQGLPCXVRARXKTXVPRXK
FT                 LRFATWNIGSLTGRCRELADVLMRRRVQCAFLQETRWKGNKSRNIGQGYRL
FT                 IYTGSPSGRNGVAVVLSEELQNGLLEVDRRSDRLMRVRVLIEGVITNLISA
FT                 YAPQAGCSAAEKETFWEQYEGVLLAVPSTEVVLVGGDLNGHVGKAAEPYER
FT                 VHGGFGHGLRNAEGENILRTCIASDLAVVNTFFQKNSQHLITYKSGSHSTQ
FT                 IDYLLTRRCHMGRVTNCKVIPGESLTAQHRLLVMDFNVTPKKKVAEKRRPR
FT                 IKWWLLNGPMQTDFLAEVKSHDISTNTETAQDAWDRAQSAIIAAGRRVLGL
FT                 SRGGRVIDXETWWWNDEVQEVTREKKAAFKKWQESNSPEDRLEYTVAKRAC
FT                 KRAVARARSESLSPLYDKLETVEGQKLIYKLARSRDKVTQDIAKCLCVKDS
FT                 QGTLLCSHASVKERWRSYFQELLNTQHPCSLHHDPPPNLGLIAPITLDETR
FT                 NCLRRMKNGKAVGPDDIPIEAWKSLGSLGVLMLTDLFNHILNTGKMPHQWR
FT                 LSFITPIYKGRGSVQDCGSYRGIKLMSHTMKLFERMIDLRLRRECTISESQ
FT                 YGFQPGSGTMDAIFALRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWW
FT                 ALRSKGIPEAYIEIIRDMYHDSASMVRTAVGDTRPFPITVGVHQGSALSPF
FT                 LFNVVLDXVSAHIQDQPPWLMMYAXDIALIAENRLTLERKVNLWKGTLENG
FT                 GLKLNVSKTEYMACGSRDSSTILIGPEPAVKSEKFRYLGSVMHESGGIDHD
FT                 VQGRISAAWAKWREVTGVVCDRRIPPXLKGLIYKSIIRPVLLYGSECWPAL
FT                 SRHTQELHVTEMKMLRWMCGVTRSDRIRNTFIRGSLGVRDVADKLQERRLR
FT                 WFGHVTRRPKNYVGCKCLAISVPGVRPPGRPRKRWLDVVMQDMRXNGLTTE
FT                 DAKDRAKWSRLSRRADPGNSRD"
XX
SQ   Sequence 3252 BP; 791 A; 794 C; 911 G; 732 T; 24 other;
     tccagaggnt gtccagacta atatctgtcc gatattdgtt tgtgggcata cgggtacgcg        60
     accccggatc ctcgagccgc cactcttana tcctcatcca gtccgtaaga atggtgtccy       120
     cccycccybc ctcctccttt ccttagctcc cthcytttac ctatcctacc ccctctattt       180
     tcctctcccy tcggtttttc cccacaaagg ggttttggag gtcagacggc agtcgctcca       240
     ndaaaaccgc aaaccgccac tatatggaac ggaccaanaa cagactgggt acggctaggg       300
     cgtcgccgca aaacgacgcg caggcacatc gccctacacc tgcgacaagt gggcaagggc       360
     taccgtgtca dgtacgggca cgghtaaaga cgcdagtacc cagavggaaa ctccgctttg       420
     caacgtggaa tattggctct ctaaccggac gatgcaggga actcgcagat gtactcatga       480
     gacgtcgggt ccagtgtgct ttcctccagg aaactcgctg gaagggcaat aagtcccgta       540
     acatcggaca gggttaccgg cttatataca ctgggtcacc ttcgggtaga aacggtgtag       600
     cggtagtgct ttctgaagag cttcagaatg ggctccttga agttgaccgt cgctccgacc       660
     gcttgatgcg agtgagggta ctgattgagg gcgttatcac aaacttaatc agtgcctatg       720
     ctccccaggc gggatgtagc gcggccgaaa aggagacatt ctgggagcag tatgaagggg       780
     tgctacttgc tgtgccgtct accgaagtgg tcttagttgg gggggacttg aacgggcacg       840
     tcggtaaggc tgctgagccg tatgaacgtg ttcacggggg ttttgggcac ggtcttcgca       900
     atgcagaggg agaaaacatt ctgagaacct gtattgcgtc tgatctggcc gtcgtgaata       960
     cgttcttcca aaagaattct cagcacctta tcacgtataa gagcgggtcc cactcaactc      1020
     aaatagacta cttattgacc agacggtgtc atatgggcag ggtaactaac tgtaaggtca      1080
     ttccaggcga aagcctaacg gcccaacatc gtcttcttgt catggacttt aacgtcactc      1140
     cgaagaagaa agtagccgag aaacgtaggc ctcggatcaa gtggtggttg ctgaatggac      1200
     cgatgcagac cgacttcctg gcagaggtga aaagtcacga tatttcgacn aacaccgaga      1260
     ctgctcagga tgcttgggat cgggctcagt cggcaatcat tgcggcgggc aggcgagttc      1320
     ttggcctttc taggggagga cgtgtcatcg acanggagac atggtggtgg aatgacgagg      1380
     tgcaggaggt gactcgtgaa aagaaggctg cctttaagaa gtggcaggaa tccaactctc      1440
     ctgaagacag actggagtac acagtagcta aacgtgcctg taaaagagct gtagccagag      1500
     cccgcagtga aagtttgtca ccattgtatg ataaacttga aactgtggag gggcagaagc      1560
     tcatttacaa actggcacgt tcccgggata aagtgacgca agatatcgca aaatgtcttt      1620
     gcgtcaaaga ttcccagggc acgctgctct gtagtcatgc ctctgtgaag gagaggtgga      1680
     gaagctactt ccaggagttg ctgaatactc agcacccatg cagtcttcat cacgacccac      1740
     cgcctaacct cggacttatt gccccaataa cccttgacga aacacgtaat tgccttcgac      1800
     gcatgaagaa cggaaaagcg gtgggacctg acgacattcc gatcgaagcg tggaaatcgt      1860
     tgggctctct tggtgtgctc atgcttactg acctttttaa ccatatcttg aacactggta      1920
     agatgccgca tcagtggcgg cttagcttca ttacccctat ttacaaagga aggggcagtg      1980
     ttcaagattg tggtagttat aggggcatta agcttatgag tcataccatg aagctcttcg      2040
     agcgcatgat cgacctcagg ctccgccgag agtgtactat ctctgagtct caatatggat      2100
     ttcagccagg atcgggcacc atggacgcca ttttcgccct cagaactttg atggaggcat      2160
     acagggaaaa aaggagagct ctgcatgtgg cctttttaga tctgcagaag gcctttgact      2220
     gtgtgcctcg tcagtgtatc tggtgggcat tgcgatccaa rgggatccct gaggcctata      2280
     ttgagattat cagagacatg taccacgatt ccgcttctat ggttaggact gctgttggcg      2340
     acactagacc cttcccgatt acagtggggg ttcaccaggg ctcggctctt agtccgttct      2400
     tattcaatgt agtgctcgat antgtctcgg ctcacatcca ggaccagcct ccatggctga      2460
     tgatgtatgc cgangacata gcactcattg ccgagaaccg actgacgctg gagcgtaaag      2520
     tgaacctctg gaagggtacg cttgagaacg gcggtcttaa actaaatgtg tcgaagacag      2580
     agtacatggc ctgcgggagc cgggactcga gcaccatcct tataggtcct gagccagccg      2640
     ttaagtcgga gaagttcagg taccttggat ccgttatgca cgagtctgga ggcatcgatc      2700
     acgatgtcca agggcggata agcgctgcct gggccaaatg gcgggaggtc actggtgtgg      2760
     tctgcgaccg cagaataccg cccaanctca aggggctgat atacaagagc atcatccgac      2820
     cggttctttt atacggcagc gaatgttggc cggcactatc tcggcacact caggagcttc      2880
     acgtcacgga aatgaagatg ctgaggtgga tgtgcggcgt aacgcggtct gaccgcatac      2940
     gcaacacatt cattcgaggt agtcttgggg tccgtgacgt agcggataag ctccaagagc      3000
     gtcgtctgag atggtttggc cacgttacgc gccggcctaa gaactatgtc ggatgcaagt      3060
     gccttgctat atcagttcct ggagtgagac ctcctggacg cccaaggaag cgctggctgg      3120
     atgtcgtgat gcaggacatg agagycaatg gtctaaccac cgaggacgca aaagaccgtg      3180
     caaagtggag taggttgagt aggagggcag accctggcaa tagccgggat taatgccagg      3240
     aggaagaaga ag                                                          3252
//
ID   RTE-3_LMi   repbase;    DNA;    INV; 2838 BP.
XX
AC   .
XX
DT   03-MAR-2014 (Rel. 19.12, Created)
DT   03-MAR-2014 (Rel. 19.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2838
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3464-3464 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           39..2822
FT                 /product="RTE-3_LMi_1p"
FT                 /translation="MYQGKLDVVKREMERINIDILGISEMRWTGMGEFASD
FT                 GHENNRSNGVAFIVSDRVGKAVMGCNYKNDGMMSIRLQGQPLNITVIQVYA
FT                 PTTDAEKEIIDQFYGDLQELLLSTPKQDIVFIVGDWNAKVGNQIVEGITGK
FT                 FGLGTANEAGQRLLEFCQDNSLVITNTLFQLPKRRLYTWTSPDGQTRNQID
FT                 YILCNQRWKSAVQSATTRPGADCGSDHELLIATFRLKLKKVAKTIPSCRYD
FT                 LESIPSDYAVEVRNRFNVLELEDKSSQVLWTEVANTVKEAAEKHIPKKKNS
FT                 KKARWLSAEALQVAEERRKAKIKGDRSAMLKLNKEFQKLARRDKNIFCNEQ
FT                 CKEVEDSNRMGRTRDLYKKIREIKGKFQAKIGMIKDRNGKDLSEAEDVKER
FT                 WAEYVEDLYKNEXHSDSAAAADDANDILELEPDILESEVQWALENMANNKT
FT                 SGHDGIPAELFKVIGKNAVKVLHSICQKIWXTQQWPEDWKRSIFIPIPKKG
FT                 ISKECSDHRTIALISHASKVMLKILQNRLRQYLDRELPEEQAGFRKGRGTR
FT                 DQIANIRWIMEKAREFQKDVYLCFIDYAKAFDCVDHNKLWDVLSKMGVPVH
FT                 LIRLIRSLYLDQEATVRTLYGTTKWIKIQKGVRQGCILSPFLFNLFAEHVM
FT                 RNARIDEEETGIKIAGINVNNLRYADDTILLAESEEELKTLLLKVKNESEK
FT                 AGLRLNVKKTKIMATKPINSWDIGGESMEVVSTFNYLGSQISDDGDCSNEI
FT                 RRRLLLGRKAMSNLEKIIRSRDITLTTKIRTVKAMVFPVVMYGCETWTIRK
FT                 AERRRIDSFELWCWRKILRIPWTAKRTNRSILEQIKPDCSLEGLILKQKLT
FT                 YFGHIMRRHASLEKTLMLGKIEGTRRRGRQRMRWIDGITEATCSNLEDLRE
FT                 KVQDRGKWRALVHGVTKSRNRLNE"
XX
SQ   Sequence 2838 BP; 1026 A; 476 C; 704 G; 630 T; 2 other;
     aggagaagca ctgcatagga acatggaatg taagatccat gtatcaggga aaattagacg        60
     tagtcaaaag agaaatggag agaattaaca tcgacatatt gggaataagt gaaatgaggt       120
     ggactggcat gggagaattt gcttcagatg gacatgagaa caacagaagt aatggagtag       180
     ccttcatagt tagtgataga gtaggtaaag ctgtaatggg atgcaactat aaaaatgatg       240
     gaatgatgtc tatcagactt caaggtcagc ccctcaacat cacagtaatt caagtttatg       300
     cgccaaccac tgatgctgaa aaggaaatta ttgaccagtt ctatggagac ttacaagaat       360
     tactgctgtc gacaccaaaa caggatatcg tcttcatagt tggagattgg aatgcaaaag       420
     tgggaaatca aattgtagag ggtataacgg gaaaatttgg tcttggtaca gcaaatgaag       480
     caggacagag actcctagag ttctgccaag ataattcgtt ggtaattact aatacattgt       540
     ttcagctacc gaaacgacgc ctatatactt ggacttcacc agacggccaa acccggaatc       600
     aaattgatta catactttgt aatcagaggt ggaagagtgc ggtccagtca gctacaacaa       660
     gacctggagc tgactgcgga tcagatcatg agctcctaat tgctacattt cggctgaaac       720
     tgaagaaagt agcaaaaact attccatctt gcagatacga ccttgagtcc ataccctctg       780
     actacgcagt ggaggttcga aacagattta atgtattaga gctggaagac aaaagctcac       840
     aagtgctgtg gacagaagta gccaatactg tcaaggaggc cgcagagaaa cacattccca       900
     agaaaaagaa tagcaagaag gccagatggc tatcggctga ggcactgcaa gttgcagaag       960
     aacgaaggaa agcaaaaatc aagggggaca gatcagctat gcttaaatta aataaagagt      1020
     ttcagaaatt agctagaaga gataaaaata tcttctgtaa tgaacagtgc aaagaagttg      1080
     aagatagtaa cagaatgggg aggacaagag atctttacaa gaaaattaga gaaattaaag      1140
     gaaaattcca ggcaaaaatt ggaatgataa aagatagaaa tgggaaagat ctaagtgaag      1200
     cagaggatgt taaggaaaga tgggcagaat atgtagaaga cctatacaag aatgaantgc      1260
     atagtgacag tgctgctgct gctgatgatg ctaatgatat tttagaacta gagccagata      1320
     ttttggagag cgaagtccag tgggcccttg aaaatatggc taataacaaa actagtggac      1380
     atgatggaat accagcagaa ttatttaaag tcattggaaa aaatgcagtg aaagtgctgc      1440
     actcaatatg tcagaaaata tggngcacgc agcagtggcc agaagactgg aaaagatcaa      1500
     tattcatccc gattccaaag aagggaatct ctaaggaatg ttcagatcac cgaacaattg      1560
     cacttatctc gcatgctagc aaggtcatgc tgaaaatctt acaaaacaga cttcgccaat      1620
     atctagatcg agagctaccg gaagaacaag ctgggtttag aaaagggaga ggaaccagag      1680
     atcaaattgc caacattcgg tggattatgg aaaaagcaag agaattccag aaagatgtat      1740
     acctctgctt tattgattat gccaaagcct ttgactgcgt cgatcacaac aaattatggg      1800
     acgtactcag taaaatggga gtaccagttc acctcattcg tctgatacgg agtttatacc      1860
     ttgaccaaga agccacggtg agaactttgt atggcacaac gaaatggata aagattcaga      1920
     aaggggtccg gcaaggctgc atattgtctc cgttcttatt caatctgttt gcagagcacg      1980
     ttatgaggaa tgccaggata gatgaagaag agacaggaat taaaatagct ggaataaatg      2040
     taaacaacct cagatatgca gatgatacca tactgctggc agaaagtgaa gaagagttaa      2100
     agactctgtt gctgaaggta aaaaacgaaa gtgaaaaggc cggtctcagg ctaaatgtga      2160
     agaaaaccaa aattatggca actaaaccta ttaattcatg ggatatagga ggagaatcca      2220
     tggaggtggt gtccacgttc aattatctcg gttcccagat ctccgatgat ggcgactgca      2280
     gcaacgaaat caggagacgc ttgttgctcg gaagaaaggc gatgtcaaac cttgaaaaga      2340
     ttataaggtc cagagacata actttaacaa caaagatacg tactgtgaag gctatggtct      2400
     tcccagttgt aatgtatgga tgcgagacct ggaccattag aaaggctgaa cggcgaagaa      2460
     ttgactcctt tgaattgtgg tgctggagga aaattcttag gattccatgg acggcaaaaa      2520
     gaaccaacag atctatatta gagcaaataa aaccagattg ctctctggaa ggtctaatat      2580
     taaaacagaa gctgacctac tttggacaca taatgcgaag acatgcctca ctggaaaaaa      2640
     cattaatgct ggggaagatc gaaggcacta gaagaagagg acggcagagg atgaggtgga      2700
     tcgatggcat cacagaagca acgtgttcca acctggaaga tctacgggag aaagtgcagg      2760
     acagagggaa gtggcgtgct ttggttcatg gggtcacgaa gagtcggaat cgactaaacg      2820
     aatagagaga gagagaga                                                    2838
//
ID   RTE-3_PXu   repbase;    DNA;    INV; 565 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-565
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3083-3083 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..544
FT                 /product="RTE-3_PXu_1p"
FT                 /translation="KNNFEREAXRRIQLGWAAYGKLRQAFTSPIPQSLKTK
FT                 VFDQCVLPVMXYGAEXWTXTVGLVHKFKVAQRAMERAMLGVSLKDKIRNEV
FT                 IRQRTKVTDIAHRISTLKWQWAGHITRRTDNRWSRRVLEWRPRVGKRSVGR
FT                 PQTRWSDDLRRAAGKSWMRVAEDRAQWRAMGEAYVQQWTSIG"
XX
SQ   Sequence 565 BP; 161 A; 120 C; 165 G; 113 T; 6 other;
     taaaaacaac ttcgagagag aggccamcag aagaatwcag ttgggatggg cagcgtatgg        60
     gaaactgcgt caggccttca catcaccaat tccacagagt ctaaagacta aagtcttcga       120
     ccagtgcgtc ctaccmgtca tgamatacgg tgccgaaama tggacamtta cggtagggct       180
     ggtccataaa tttaaagttg ctcaacgtgc tatggaaagg gctatgctcg gagtttctct       240
     gaaagataaa attcgtaacg aagtgatccg acagagaacc aaagttaccg acatagccca       300
     ccgcattagc acgctgaagt ggcaatgggc cggccatata acccgaagaa ccgataaccg       360
     ttggagtaga cgagttcttg agtggagacc acgggtcggc aaacgtagcg taggacgtcc       420
     tcagactcgg tggagcgatg atcttcgcag ggcagctggc aagagctgga tgagagtggc       480
     cgaggatcgt gctcagtggc gtgccatggg agaggcctat gtccagcagt ggactagtat       540
     aggctgatga tgatgatgat gatga                                             565
//
ID   RTE-3_SIn   repbase;    DNA;    INV; 5231 BP.
XX
AC   .
XX
DT   04-MAY-2012 (Rel. 19.02, Created)
DT   04-NOV-2021 (Rel. 26.11, Last updated, Version 2)
XX
DE   RTE non-LTR retrotransposon sequence - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-3_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-5231
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Solenopsis invicta genome.";
RL   Repbase Reports 14(2), 484-484 (2014).
XX
RN   [3]
RP   1-5231
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (04-NOV-2021).
XX
DR   [3] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           640..1716
FT                 /product="RTE-3_SIn_1p"
FT                 /translation="MEEGKEGRKEREREVEEGTGEEKRRVGRPSKAEGMRD
FT                 RAYSLSLIEAFKRGEKRKEIDALQADIFKKSIKVVRSPEKQLEKQPEKQLE
FT                 RQEEGGLSEILREVREGFKEIKAELREVKEGKAEMREWMEEMRKRLDSLEK
FT                 RVEEIEKGRGREEKEEGDEERKEEEGVKQMERGRKGEMKELEERMKRIELE
FT                 GEKRRREERKRNIIVKGVKAKEKGIEGLRKEIEEIVGATGATARVEGIRSI
FT                 GKKDKEGREMVWVRLASVGEKIEVMKGKAKLRERREWIVDDLTEKERRIEW
FT                 WIRKEAERIRREGRKVRVGYMKIWIEEKLWVWDEIKDELREWHGKEVREWK
FT                 GGMEKGRGVEKEKEDF"
FT   CDS           1689..5105
FT                 /product="RTE-3_SIn_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RSGKRERGFLVGRWTEGEGEGEIEGNIENEKHRKKRR
FT                 NKKKEDGKKYKIGFWNVAGMENKEKDFRERLKEWDVMFLSETWLQKKGWER
FT                 VRKWLPKGYVWEVQEAARKSKKGRAMGGMIVGIREGIGREKDDKERKEEGL
FT                 QAVKVNLGGEWWRLIGVYVNRDLEGKMGRLREWMEDREEGVRVLIGGDFNA
FT                 RTGREGGRIGEDEEGGAEQGKRSSKDEKMNREGKKLCGYIGELGWSILNGS
FT                 VKGDEEGEWTYTGGKGGTVIDYVIGNEETRRKVEKMKVEDWVDSDHQPITV
FT                 WVEGGGRREERTGKRKGRGRRGVWTEKGKKKFEEYLGKRDSDGEGVGEVWR
FT                 KMKRKVEVALERVEKEEKKERRGWWDEECRDRKREVMEELKWWRKRGGEGK
FT                 KYKEMRKRYREHCEEKKKKERERWERDIEGIRSEKDVWKVVNKGRRKRKRV
FT                 REGIEMGEWEKHFRGVLGGVEWRIRGEVMGRGVEEEEEISREEIGRAIRRL
FT                 RDGKAAGGDGITNEVWKYGGKEIREWLWEICNRVWKGEGWPEDWREGIVVP
FT                 IVKKGEGEKVEDYRGVTLTQTAYKVYAAVLAERLREEVENKGILPPSQTGF
FT                 RRGVGTIDHIYVLNYLINKKIAEAKGKIVVMFVDMKAAFDSVDREILVQTM
FT                 RRKGVRESLVVRCEEVLEETISRVRVGEREGGNFWTNRGVRQGCPLSPCMF
FT                 TLLLADLDEELEKGGWGGVKVKGRKIYSLAYADDVAVVAEDEAGMKGLIKT
FT                 LEEYVEQKRLEVNVEKTKVLRCRRGGGRQKKIIWKWKGNEIEEVKRYKYLG
FT                 YMMMANGGQKEHIEERVKKGAVVMREVWGIGKRKFGKNWARRMWLFDRLVW
FT                 TVVSYGAEIWGWKEREKVERIQDRYLKWVIGVGRYTPGYMVREEMQREKLR
FT                 GRAGMRAWSYEKKLGEGGGGELARLCWEEIRGRAKEGKVMGKWEEERRSFY
FT                 EEKSWNIKEIEKLREEGGLRGEEVVARERRRQEEERWEKIRSSKFNRWYSR
FT                 VKGKGVPEYLKRDWKEERWKRIARFRLGDGMRGGRYWEEKEKRKCRICGWG
FT                 EETWEHIWEECTDWGTEKGWQEMVGEVLGERGEGEVWMRKLEEMREGGGWL
FT                 GMNESVEGREERVEESGGNGSPKNECGGVDG"
XX
SQ   Sequence 5231 BP; 1974 A; 319 C; 2041 G; 897 T; 0 other;
     ggacttccgt ttccggtagc gagagtgact gacgtgtgtg tgtggagagt gcgagtgata        60
     aacaggtatt aggggatagg gtgagacgtg gtggagtgcg aggaggtgaa gggaaaggga       120
     aggggctggt ggcagagggt gaataagggt aaagggccgg gggaagagaa tagggagaca       180
     ggagggatag tagggttggg acgggatttg gaggttagac gggagagcag gtttagagtg       240
     tagagagaaa gcagaaaaga gggagggtag cgacatcggg cggtagaagt gagaagcaga       300
     gcaggagaga gtaagtgcag tagcgggaaa ttttgaatta gagtaacgtt tgagtaaccg       360
     atttaatatc ttaatatatg attttatatt tttgcatttg ctacagcggt ataataatta       420
     taaaaataag ctaaaatatt ataaaacttg tttaaattgt tttttttttt ttttttttta       480
     tcatcttaaa tataaaagag tcatattttc tacaaaagaa gagggagaaa aaaaaataca       540
     tattaattac ttaaaagaaa tttttgtttt tcttttacaa cccgactgca agtaaataaa       600
     ctcgtgaata ggaagtaggc aggttagagg aaagacgaga tggaggaagg aaaggaggga       660
     aggaaggaga gagaaaggga agtagaggag gggacagggg aagagaagag gagggtgggg       720
     agaccgagca aagcagaggg gatgagggat agagcatata gtctatcgct gatagaggcg       780
     tttaagagag gagagaaaag gaaggagata gatgcattac aggcagatat ctttaagaaa       840
     agtataaagg tagtgagatc gccggaaaaa cagctagaaa agcagccgga aaaacagctg       900
     gaaaggcaag aagaaggggg gttgagtgag atattaaggg aagtaaggga gggttttaag       960
     gaaattaaag cggaattaag agaggtaaag gaggggaaag cagagatgag ggaatggatg      1020
     gaagaaatga ggaaaagatt agacagttta gagaaaagag tggaagagat agagaaaggt      1080
     agggggaggg aggagaaaga ggaaggggat gaggaaagga aggaagagga aggggtaaag      1140
     cagatggaga gagggagaaa gggagagatg aaggaattag aagaaaggat gaagagaata      1200
     gagttagagg gggaaaagag gagaagggaa gaaaggaaga ggaatataat agtaaaagga      1260
     gtgaaagcaa aggagaaagg aatagagggg ttaagaaaag agatagaaga gatagtgggg      1320
     gcaacggggg cgacagcgag agtggaaggg ataaggagta tagggaaaaa agataaggaa      1380
     ggaagggaaa tggtatgggt aagattagca agtgtagggg agaaaattga agtgatgaaa      1440
     ggaaaagcaa agctgaggga aagaagggag tggatagtgg atgatctgac agaaaaggag      1500
     agaaggatag agtggtggat aaggaaggaa gcggaaagaa taaggaggga aggtaggaaa      1560
     gtaagagtag gttatatgaa aatatggatt gaggagaaat tatgggtatg ggatgagatt      1620
     aaggatgagt tgagggaatg gcacggaaaa gaagtaagag aatggaaggg ggggatggag      1680
     aagggtagag gagtggaaaa agagaaagag gatttttagt agggaggtgg acggagggag      1740
     agggagaggg agaaatagaa ggaaatatag aaaatgagaa gcataggaaa aagaggagga      1800
     ataagaaaaa agaggatggc aaaaagtata aaataggctt ttggaatgtg gcaggcatgg      1860
     aaaataaaga gaaggatttc agggagagac taaaagaatg ggatgtaatg ttcctgagtg      1920
     agacttggtt acagaagaag ggatgggaaa gagttcgaaa atggctgcca aaaggatacg      1980
     tgtgggaagt gcaagaggcg gcaaggaaga gtaagaaagg gagggcaatg ggaggaatga      2040
     ttgtggggat aagggaaggg atagggagag aaaaggatga taaggaaaga aaagaggagg      2100
     gattacaagc agtaaaagta aatttagggg gagagtggtg gagactaata ggagtatatg      2160
     taaatagaga tttggaggga aaaatgggaa ggctgagaga gtggatggag gacagagagg      2220
     aaggggtgag ggtgttaata ggaggggatt tcaatgctag gacggggaga gaggggggaa      2280
     gaataggtga ggatgaagag ggaggggcag aacagggaaa gaggagctcg aaggatgaaa      2340
     agatgaatag agagggaaaa aagctatgtg gttatatagg agaattggga tggtcaatat      2400
     tgaatggaag cgtaaagggg gatgaggagg gggaatggac gtatacagga gggaagggag      2460
     ggaccgtaat agattatgtg atcgggaatg aggagacaag aaggaaggtg gaaaagatga      2520
     aggtggagga ttgggtagac tccgatcatc agccgataac ggtatgggtg gagggaggag      2580
     gccggaggga agagaggacc gggaaaagga aagggagagg aagaaggggg gtttggacgg      2640
     agaagggaaa aaagaaattt gaggaatacc ttgggaagag ggatagtgat ggtgaggggg      2700
     taggggaggt ttggaggaaa atgaagagaa aagtagaagt ggcattagag agagtagaga      2760
     aggaagagaa gaaggaacgg agaggatggt gggatgagga atgtagggat agaaaaagag      2820
     aggttatgga ggagttaaaa tggtggagga agagaggggg agaagggaaa aaatataaag      2880
     aaatgagaaa gaggtacagg gaacattgtg aggagaagaa gaaaaaggag agggaaagat      2940
     gggagaggga tatagaagga ataagatccg aaaaggacgt gtggaaggta gtgaataaag      3000
     gaaggaggaa gagaaagaga gtcagggaag ggattgaaat gggggagtgg gaaaaacact      3060
     ttagaggggt gctgggggga gtagagtgga ggataagagg ggaggtaatg gggagagggg      3120
     tagaggagga agaagagatt agtagagagg aaattggtag ggcgataagg agattgaggg      3180
     acggaaaagc ggcaggaggg gatgggatta cgaatgaagt atggaaatat gggggaaaag      3240
     aaataaggga atggctgtgg gagatatgta atagagtgtg gaagggagag ggatggccgg      3300
     aagattggag agaagggata gtggtaccga tagtgaaaaa gggggagggg gaaaaggtag      3360
     aagactatag gggggttacg cttacgcaaa cggcgtataa agtgtacgcg gcggttttgg      3420
     cggagagatt gagggaagaa gtagaaaata aagggatatt accaccgagt caaacggggt      3480
     ttaggagagg ggtaggaacg atagatcaca tatacgtatt aaattattta ataaataaga      3540
     aaatagcgga agcaaaaggc aaaatagtag ttatgttcgt ggatatgaaa gcagcgtttg      3600
     actcggtgga tagggagata ctggtacaga caatgaggag aaaaggagtg agagagagtc      3660
     tggtggtgag gtgtgaggaa gttttggagg aaacaataag tagagtaagg gtgggggaaa      3720
     gagagggggg aaacttttgg acaaatagag gagtgagaca gggatgtccg ttgagcccat      3780
     gcatgttcac actactacta gcggatttgg atgaggaatt ggagaagggg ggatgggggg      3840
     gagtaaaggt gaaaggaaga aaaatttatt ccctggcgta tgcggatgat gtggcggtgg      3900
     tggcagagga tgaagcaggg atgaaagggt taataaaaac attagaagaa tatgtagaac      3960
     agaaaagatt agaagtaaat gtggagaaga caaaagtgtt gaggtgtaga agagggggtg      4020
     ggagacagaa aaagataata tggaaatgga aaggaaatga aatagaggaa gtgaaaaggt      4080
     ataaatattt gggctacatg atgatggcaa atgggggaca gaaagaacat atagaggaga      4140
     gagtcaaaaa aggagcggtg gtgatgagag aagtatgggg aatagggaaa aggaaatttg      4200
     gaaagaactg ggctagaagg atgtggttat ttgataggtt ggtatggacg gtggttagct      4260
     atggggcaga aatttggggg tggaaagaaa gggaaaaggt agagaggata caggacaggt      4320
     acttgaaatg ggtaataggg gtgggaaggt acacaccggg gtacatggta agggaggaga      4380
     tgcagaggga aaaattaagg ggaagggcag gaatgagggc atggagttat gaaaagaaac      4440
     tgggagaagg aggagggggg gagttggcaa ggttgtgttg ggaggagata agaggtagag      4500
     cgaaggaggg aaaggtgatg ggaaaatggg aggaagaaag aagaagtttc tatgaagaaa      4560
     agagctggaa catcaaggag atagaaaagt tgagagaaga gggagggtta aggggggaag      4620
     aggtggtggc aagagagagg aggcggcagg aagaggaaag gtgggaaaaa attaggagct      4680
     cgaagttcaa cagatggtac agcagagtga agggaaaggg agtgccggag tacttgaaga      4740
     gggattggaa agaggaaaga tggaaaagga ttgcgaggtt taggttagga gatggtatga      4800
     gaggaggtag atactgggaa gagaaagaga aaagaaagtg taggatatgt ggatggggag      4860
     aggaaacgtg ggagcatata tgggaggaat gcacggattg ggggacggag aagggatggc      4920
     aggagatggt aggagaggtt ttaggtgaga ggggggaggg agaagtttgg atgagaaaat      4980
     tggaggagat gcgggaggga ggagggtggc tgggtatgaa tgagagtgta gaaggaagag      5040
     aggaaagggt ggaagaaagc ggcggaaacg gaagtccaaa gaatgagtgt ggaggtgtgg      5100
     atggatgagt gatttttctc tctctctctc gtgtgttgta aaagaagcaa tgaataaaaa      5160
     ggttgaaact atgtaagcgg agcggaagtc cgcaatgtac tccgcaagga ataaagtacc      5220
     tactactact a                                                           5231
//
ID   RTE-40_LMi  repbase;    DNA;    INV; 3243 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3243
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 288-288 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(807..1028,983..1180,1158..1706,1658..2476,
FT                 2472..3227)
FT                 /product="RTE-40_LMi_1p"
FT                 /translation="QWNKVRQLFHFKGLYISSTGFERKNIYKGTWISPDGR
FT                 TVNQIDHVAIEDKLKKWITNVKTARGQSVVPITFCSKNSKGAECGSDHFLL
FT                 KIDLRVGWKPKLTKKLQKVVHFDYNKLVTDEGLQDNFRINLIVLKPWQHCY
FT                 RNPGNIATDSLDAGSLWEGIRDLTETAKEVIPKRMNRKKVWFDXECELAIL
FT                 ERQRAKQVWIQSARGRYEEGKERFDEARRRTQATLRRVKRNYFKNIMVEAQ
FT                 KDFHGNKSKELFRKVKAIKGEGKKHGFIKDRNGRVLTNNNDIAIRWMEYFD
FT                 ELLNCEEPXETLEFEEPVTVDPEYPLQHSKKGTCNCGSGIPPPTFEEIKKN
FT                 IKELKNGKSAGEDGIVAEMLKSGGDSCIQNIHKLVRKIWQEEVIPEDWKVA
FT                 LICPIHKKNDKMLCDNYRGIALLNISYKVYSKCVLLSRIKPLAEELIGEYQ
FT                 GGFQPGKSTTDHIFFIKQVCEKMYEYDKEIHLLFVDFQKAYDSIHRTSLFK
FT                 ALIEFGVSKKLVRLVSLCLDDTRAKIKLGNRTTDSFRVTTGLRQGDSLSPI
FT                 LFNLVLEKIIREMDSFNHQGIQVANRNITHLAYADDIVLMTHTKENLKCNA
FT                 NDDHGKHSKQIWTESEPHKNQIHDSWKSPTPRNPGINCGNNTYKRVKDFKY
FT                 LGSIISENSSSGMEIKARIQAGSRCLHSIHNILTSRSISRALKLRLYKTLI
FT                 LPVILYGCQCWSTRKQELNRLAVFERRCLRKIFGPVKDNITGEWRRRHNIE
FT                 LEQLYSEPNIVGLMRSRRLEWAGHVVRMSEERWPRVAMEMIPTGKRPLGRP
FT                 RKRWMDGIREDLQKLEAWKNWEQTAKNRNEWRALIISSRGPLGLIA"
XX
SQ   Sequence 3243 BP; 1164 A; 569 C; 758 G; 750 T; 2 other;
     cccagggggc tccaactagg aggcgcccgc gggaccccga gctgagtctg acattgcttc        60
     cacttacttg tgcaggcccc tgcttttatc tttcctgtcg gcctcccttg gccaactctt       120
     gtttcttcga ccccaacagt attaggtttc gaggctggag ggtgtctttc attttccaaa       180
     cccttcttct acaactggag agtaaactcc aaaaacaaaa aaatcctggt cctccaggtt       240
     gggggttggc aacaggctac caacctgttc cagaaaacta acaaggtaaa aacgatataa       300
     caaggcctcg gataggacgg atgaatggaa atcgacccaa gcaagtgaac ggacagaata       360
     ctggactacg gattggaacc tggaatgtta gaagcttgca tcaagcagga gcaatacgga       420
     gtatgacaag ggaagtagaa aggtacaaaa tggatgtagt agctctacaa gaaattagat       480
     ggccgaactg ctcaaccgat gtgaaaactc aacattctgt atggagtttc agaagaaacc       540
     atacactggg gacaggtttt aagtaaggaa agccttatgt aaccagtact agacttcagt       600
     cagtaaactc aagaatctct tttttgacta tagtactggg ggacacaagc ttgtcctgat       660
     caactgaatt cgaaggacgc cttttatgat gactgagact gcaagtgaca gtgtccaaag       720
     gatcacttaa ggtgctgtta ggtgacttaa atgccaaaat tggaaaagaa caaatttttt       780
     tgtggactcc atgatgtaag caatgacaat ggaataaggt tcgtcagctt tttcacttca       840
     aaggactgta cataagtagt accggttttg aaaggaaaaa catatacaag ggcacttgga       900
     tatcacctga cggaagaact gtcaaccaaa ttgaccatgt ggctattgaa gacaagttaa       960
     aaaaatggat cacaaatgtt aaaacagcaa gggggcagag tgtggttccg atcacttttt      1020
     gctcaaaata gatctaaggg taggatggaa accaaaatta actaagaaat tacaaaaagt      1080
     cgtccatttc gactacaata aattagtaac agacgaaggt ttacaggaca attttaggat      1140
     taatctaatc gttttgaaac cctggcaaca ttgctacaga tagtctggat gctggaagtc      1200
     tttgggaagg aattagagat ctaacagaaa ctgcaaagga agttatacca aagcgaatga      1260
     acagaaagaa agtatggttt gatgasgaat gtgaactagc tatactagaa agacagagag      1320
     cgaaacaagt atggattcaa agtgcaagag gaagatatga agaaggaaaa gagcgatttg      1380
     acgaagcacg gcgtagaaca caggctacac tcaggagggt caagaggaat tacttcaaaa      1440
     acataatggt tgaagcacag aaagactttc atggcaacaa atctaaggaa ctatttagga      1500
     aagtgaaagc gattaaaggg gaaggaaaaa aacatgggtt tataaaagac agaaatggac      1560
     gagttcttac aaacaataat gacatagcaa ttaggtggat ggagtatttt gatgaactcc      1620
     taaactgtga ggaacctamc gaaaccttgg aatttgagga acctgtaact gtggatccgg      1680
     aataccccct ccaacattcg aagaaataaa aaaaaacata aaagaactaa agaatggcaa      1740
     aagtgcagga gaagatggta tcgttgcaga aatgctaaaa tctggaggtg actcttgtat      1800
     acagaacatc cacaagttag tcagaaagat atggcaagaa gaagtgatac ctgaagattg      1860
     gaaagtggct cttatttgcc caatccataa aaagaatgac aaaatgctat gtgacaatta      1920
     tagggggata gcattactaa atatttccta caaagtgtat tcaaaatgcg tgctgctctc      1980
     acgaattaaa ccactggcgg aagagctaat tggcgaatac caaggtgggt ttcaaccagg      2040
     gaaatcaact actgaccata tattttttat taagcaagtc tgtgaaaaaa tgtatgaata      2100
     tgataaagaa atacaccttc tgtttgttga cttccaaaag gcttatgaca gtatccacag      2160
     gacaagtttg tttaaggcct tgatcgaatt tggtgtgtcc aagaagctgg taagacttgt      2220
     atcgctatgc ctggatgaca caagagcaaa gattaaactg ggtaatagaa ccacggatag      2280
     ttttcgggta accactggac taaggcaagg ggatagtctc tccccaatat tattcaacct      2340
     agtgcttgag aagatcatta gagaaatgga tagtttcaac catcagggta tccaggtagc      2400
     aaataggaac atcacccatc tagcatacgc agatgatata gtcttaatga cacacacaaa      2460
     agaaaatttg aaatgctaat gatgaccatg gaaagcatag caagcaaatt tggactgaaa      2520
     gtgaacccca caaaaaccaa atacatgata gttggaagag ccccacaccc agaaatccag      2580
     gaattaactg tggaaataac acctacaaaa gagtaaagga ttttaaatat cttggaagca      2640
     taatttcaga aaattcatcg tctggaatgg aaataaaggc aagaattcaa gcgggtagta      2700
     gatgcttgca ctcaatacac aacattttga cttcccggag catatcacga gccctcaaac      2760
     taaggttgta taaaacatta attcttcctg tcattctata tgggtgtcaa tgctggagca      2820
     ctagaaaaca ggaattaaac aggctcgcag ttttcgaaag gagatgcttg aggaaaatat      2880
     ttggaccggt taaagacaac ataacaggag aatggaggag aaggcacaat atagaattag      2940
     aacaactcta tagtgaaccg aacattgtgg gcttgatgag aagtagaaga ttagaatggg      3000
     cagggcatgt ggtacgtatg agtgaggagc gatggcctag ggtggccatg gagatgatac      3060
     caacaggcaa aagaccactg ggacgaccaa ggaagaggtg gatggacggg ataagagaag      3120
     acctgcaaaa acttgaggcc tggaaaaact gggaacagac agcgaagaat cgcaatgaat      3180
     ggagagcctt gattatatca tcgcgcggtc cactgggcct gatcgcgtaa agtaaagtaa      3240
     gta                                                                    3243
//
ID   RTE-41_LMi  repbase;    DNA;    INV; 3099 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3099
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 289-289 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(495..1100,1006..1362,1506..2495,2405..3088)
FT                 /product="RTE-41_LMi_1p"
FT                 /translation="MMKIKISLKGTTIEAIQVYAPQVGCTSDEKQEFEEEL
FT                 QKQMGRKNVIVMGDLNAHVGRERQGYESVLGPEGWGCRNEEGERLLEFCQR
FT                 NGLLVGNSWFKKRESHKITWYSKDLKRKSIVDYFLYDSEMNIIVIKVIPSE
FT                 ALDSDHRLLVMNLKGQGQQRDRKPRKTYKGMKVEGGRKQATVPTSSKGKHP
FT                 KGRTKNGRRGMGKLKEEESRLQYLQVVKESIPKDEPKTVEEEWGRFKGTLV
FT                 SAAEAICGRTSNKKRWKETPWWNDKTKDIVQKKNRAFRVWFQKRTVETREE
FT                 YQARKKEAKRVVAEERRKWMERGPDDGGGTRMETWMRGKAEEKEEEQQIEK
FT                 DLTWGEVEEALGKMKGGKSPGLDELSVEMVRAAGEVGIQWLCRVMKTVWRQ
FT                 KTIPEDWKKGIIVPIFKKGNRKECKNYRGITLMSHCAKIFEKILEARIRAK
FT                 LEGGMREEQHGFRTGRSTVDLIFAVRQLQEQHYEYGIDLLMTFLDIEKAYD
FT                 SVHRSKVWKALEKRGVAKQTIWRIREMYHGCVSCVKVGGERSAWIEQKNGL
FT                 RQGSALSPLLFIVVMDDIMSTVAQVIGEGKMKAMVFADDLMIWGNKEEEVQ
FT                 EQLDVWEQQVQEYGMKFSISKSEMIITSRAKERGTTGVTIRGERLRRVRVS
FT                 STDDYHIKSKRERNNWSNNPWGTIEESESFKYLGSLIQEDGKNDREINERG
FT                 RKAEAFRKSVRSLIWNRDVPLRSKKVIYRSYYVPILTYASETWVMKGREKS
FT                 KLQASEMKFLRNSIGVTKIDRLRNERIRELMKVEPLQEEIEKSRLKWYGHI
FT                 KRMEERRIPRRMHEMKLEGKRPRGRPRDRWLKGVEEGVKKKGEDWTKVKTE
FT                 RWWEDRRRWRGLCSKQTRPEAGNCPR"
XX
SQ   Sequence 3099 BP; 1167 A; 390 C; 966 G; 575 T; 1 other;
     ttgtccaagt cgtgggagac aggcaacaga tgaagtaggg gattgcctgt aggagtgagg        60
     tgcagcggag atgtcatgcc ccggccgcta cggtagctgt gaaggtccta cagaaaccct       120
     gaaaagtgac ggctaacggg gctctggtga agctacgata ggcccagcaa gccagtagtg       180
     gmttatgatt atgctttcaa aaatagaaag cctcgaaaag gacgaatcta atcaacgacg       240
     aactggctaa aacaaggact aagatttggg acattaaata tacaaacatt gactggaaag       300
     gtggaggagg tagatatgat ggaaagaagg aagttagacc tattggggtt agctgaaacg       360
     agatggaaag gagaaggaag gagagaactg aggaaagcta tcgactatga ctggaaatga       420
     ggagggaagg agaaatggaa tgggaatagt agtaagagat ggattaaaag aggaagtgaa       480
     gaataagtga tagaatgatg aagatcaaaa tatcactcaa ggggacaacc atagaggcaa       540
     tacaagtgta tgcaccgcag gtgggttgca cttctgacga gaagcaagag tttgaagagg       600
     aattgcagaa gcagatggga aggaagaatg tgatagtaat gggggattta aatgcacatg       660
     ttggaagaga aagacaaggc tacgaaagtg tgcttggacc agagggttgg ggctgccgaa       720
     atgaggaagg tgaaagacta ttggagttct gtcaaaggaa tggcttgctg gttgggaact       780
     cttggttcaa gaaaagagag agccacaaga ttacctggta cagtaaagac ttaaagagaa       840
     agtcgatagt tgactacttc ttgtacgata gtgagatgaa catcattgtc atcaaggtaa       900
     taccatcaga ggccttggat agcgatcacc gtttgctggt aatgaacctg aagggacaag       960
     gacaacaaag ggacagaaaa ccaagaaaga cgtataaggg tatgaaagtt gaaggaggaa      1020
     gaaagcaggc tacagtacct acaagtagta aaggaaagca tcccaaagga cgaaccaaaa      1080
     acggtagaag aggaatgggg tagattcaag ggaacattag taagtgcggc ggaagcaata      1140
     tgtgggagga caagcaacaa aaagagatgg aaagaaacac cctggtggaa tgataaaaca      1200
     aaggatatag tacagaagaa gaatagagcc tttagggtat ggttccagaa gagaacagta      1260
     gagacaagag aggagtatca agcaagaaag aaagaagcaa aaagagtggt ggcagaggag      1320
     agaagaaagt ggatggaacg tggaccagat gatggaggag gatagtgaag gttcaaaaag      1380
     gtgttatgat gattaaaagt aagaggaaga atgatggatt atgcccaaat ggtgaacaaa      1440
     agcaagttta gagaataagg aggaactcaa gaatatgtgg aaggagtatt ttgaagaact      1500
     cctgaacccg aatggagacc tggatgagag gaaaagctga ggagaaagag gaggaacagc      1560
     aaatagaaaa agaccttacg tggggagaag tggaagaggc attgggcaag atgaagggag      1620
     ggaagtcacc gggtttggat gagctaagtg tcgagatggt gagagcagca ggagaggtgg      1680
     ggatacaatg gctctgtcga gtaatgaaaa ctgtatggag acagaagacg ataccagaag      1740
     actggaagaa gggaataatt gtcccaatct ttaagaaggg aaatagaaaa gagtgcaaga      1800
     actatcgtgg gataacactg atgagtcatt gtgcaaagat ttttgagaaa attttggaag      1860
     cacgaattcg ggcaaaatta gaaggaggga tgagagaaga gcaacatggc ttcagaacag      1920
     gaaggtccac ggtggatcta atttttgctg taaggcaact gcaggaacaa cactatgaat      1980
     atggaataga tctactaatg accttcctgg acattgaaaa agcatatgat agtgtacata      2040
     gaagcaaagt gtggaaagcc ctggagaaga gaggggtagc aaaacagact atttggagga      2100
     taagggaaat gtaccatggc tgtgtgagct gtgtgaaagt gggaggagag agatcagctt      2160
     ggattgaaca gaagaatggc ttgaggcagg gaagtgcact ttcaccatta ctctttattg      2220
     tagtgatgga tgatataatg agtacagtag cacaagtaat tggtgaagga aagatgaaag      2280
     ctatggtgtt cgcggacgat ctgatgattt gggggaataa ggaggaggaa gtgcaagagc      2340
     aattggatgt atgggaacaa caagtacaag aatatggcat gaaatttagt ataagcaaga      2400
     gtgagatgat tatcacatca agagcaaaag agagaggaac aactggagta acaatccgtg      2460
     gggaacgatt gaggagagtg agagtttcaa gtacctagga agcctgatac aggaagatgg      2520
     gaaaaacgac agagaaataa acgagcgagg gagaaaagca gaagcatttc ggaagagtgt      2580
     cagaagcctg atatggaaca gggatgtacc cctaagaagt aaaaaagtta tataccggtc      2640
     atactatgtc ccgatcctga catatgcatc tgaaacctgg gttatgaaag gaagagagaa      2700
     aagcaaatta caagctagtg agatgaaatt cttgaggaac agtattggag tgacaaagat      2760
     agacaggtta agaaatgaga ggatcagaga gttaatgaag gtggaaccat tacaagagga      2820
     gatagagaaa tcaaggctga aatggtatgg gcatattaag cgaatggagg agaggaggat      2880
     acccaggagg atgcacgaga tgaaactgga aggaaagaga ccaagaggaa gaccgagaga      2940
     cagatggctg aaaggagtgg aggaaggtgt aaagaagaaa ggagaagact ggaccaaggt      3000
     gaagacggag agatggtggg aagacagaag acgatggaga ggcttatgtt cgaagcagac      3060
     ccggccagag gctggaaact gtccaagatg atgatgatg                             3099
//
ID   RTE-42_LMi  repbase;    DNA;    INV; 3369 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3369
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 290-290 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           557..3352
FT                 /product="RTE-42_LMi_1p"
FT                 /translation="MQTSDGITFLYSGCEEEHRDGVGLLLTKAAKKSLLEW
FT                 RPVSSRIMTARFKTKVRNVTLIQCYAPTETSDIEKKEEFYHLLRETAKKVN
FT                 KKDILIVMGDMNAKVGDNNEGLEQIMGVHGVGEMNENGERFSDFCASHDLV
FT                 IGGTLFPHRRCHKITWVSPDHTTENQIDHIAVSRKFRRSLEDVRNRRGADA
FT                 NSDHHLVIANFRMKIVASKKKFEPRNRRFDVGKLKDPQVAEGFQLELRNRF
FT                 QALELEMTEDKDIEEMWTEVKNTFVQVSERQLGFKNHLRKDWMSEHTWMKI
FT                 TYRKEAKGRVNQSRSRQQKAQAQADYRAADKEVKRSVRRDHRRWTDEQADR
FT                 AEQAARRGDAKELYDITKTLSKKSFQRNRPVRNKKGEILTTHEEQLRRWKE
FT                 HFNEVLNRDLGGEAEEQERTEYRDPSPSIGVNAPTKAEIRIALKQIKNGKA
FT                 PGADNITSEMLKTDLDTTVELLYILIGKIWKEEKLPTDWKRGIIVKIPKKG
FT                 DVTNCNNWRGITLLSVPSKVLSRIILNRIKDSVETQLRREQAGFRKHRSCV
FT                 DLINTLRIILEQSAEWQHTLYLTFVDFEKAFDSVNRRVMWDTLAKYDIPTK
FT                 IINIIKEMYQDYECQVLHNGELTEPFQVNSGVRQGCILSPTLFLLVLDHVM
FT                 KRVMRGRQRGVQWGMRDTLEDLDFADDICLMAQRYRDIEEKLARLQREGEA
FT                 AGLKINVRKTKEMRINSTTTTRLTINGEDVEQVQSFLYLGSIVTTTGGAEE
FT                 DVRSRIRKANGAFVQLYPIWRNRNISRKTKLRLFNSNVKAVLMYGCETWKV
FT                 TNHIKNQLQVFINRCLRRILNVRWPNIMTNQDLWRETNQQPINIQIKERKW
FT                 KWIGHTLRKPDEAIEKVALDWNPQGVRKRGRPKHTWKRTIQREAAEDGKTW
FT                 SEVKRLARNRIRWRNFVSALCSRGNDRN"
XX
SQ   Sequence 3369 BP; 1133 A; 662 C; 884 G; 687 T; 3 other;
     tctggggaca ccgcctacgt agcactgccg tgcgggcagg aggtttgcgt cgggctatgc        60
     cggcgtagct gccagcaggg cacccatgcc gacaggccga agaggagctg tgtccacaac       120
     gacctatcga tatcctgtat cctgtccctt tccaatccct agcccatcct ttctcctttc       180
     catttccact taaccaatac tggcggttaa accacgaata ggggtgggag gaaatgccaa       240
     gcccatatgc tgaacatctg ctaaatcgtc agtgcctggg cgacaaggtg gcagccccac       300
     caaggcaatc ggaagcggtg ggccaatcac ccgcccttct taaaagaata ctgattactg       360
     aaactgaaac gagaaaagaa aaccggatgg ataaactggt gacgaccttt ggcatgaaaa       420
     ggaaaacaaa aattggcttt tggaacatac gaaccttgag ggagagtagc aagctgaaac       480
     aagtaccagg gaaatkaata actataagct agatatcctg ggattgagtg aagtgaggtg       540
     gmcagagttt ggtgaaatgc agacatcaga tggaattacg tttttatact caggatgtga       600
     agaggaacat cgggatggag ttggactact gttgaccaag gcagcaaaga agagccttct       660
     agaatggaga cctgtgtcca gtaggatcat gactgccaga tttaagacga aggtccgaaa       720
     cgtgacgctc atccaatgct atgcccccac agagacttca gatattgaga agaaggagga       780
     gttctatcac ctgctacgag agactgcaaa gaaagtgaac aagaaagata tcctcattgt       840
     tatgggagac atgaatgcca aggtgggaga caacaatgag gggttggaac agataatggg       900
     ggtacatggc gtgggtgaaa tgaatgaaaa tggggaacga tttagcgact tctgcgcaag       960
     ccatgacctt gtaattggag ggaccctgtt tcctcatcgg agatgtcata agataacatg      1020
     ggtatcccca gatcatacta cagaaaatca aattgaccac attgcagtat cgaggaagtt      1080
     caggaggagc ctggaagatg tgcggaatag aagaggagca gacgcaaata gcgaccacca      1140
     tcttgttatt gccaatttcc ggatgaagat tgtggcttcc aaaaagaaat tcgagccaag      1200
     gaatagaaga ttcgacgtag gtaaactgaa agatccacag gtagctgagg ggttccagct      1260
     ggaactccgg aatagattcc aggcactgga actggagatg actgaggata aggacatcga      1320
     ggaaatgtgg acagaagtta aaaatacttt tgtgcaagtg agtgagagac agcttggctt      1380
     taaaaaccac ctgaggaaag actggatgtc cgaacatacc tggatgaaga tcacctatag      1440
     aaaggaggcc aagggaagag taaaccagag caggtccagg caacagaaag cacaggcaca      1500
     agctgattac cgagcagcag ataaggaagt gaaaaggagt gtgagaagag accacagaag      1560
     atggacagat gaacaggctg atagagcaga acaggcagcg cggagggggg atgcgaaaga      1620
     actttatgat atcactaaga cgctctcaaa gaaaagcttc cagagaaacc gaccagtaag      1680
     gaacaaaaaa ggggagatac tcactacaca tgaagaacaa ttacgtaggt ggaaggaaca      1740
     ctttaacgaa gttctaaata gagaccttgg tggtgaggca gaagaacaag aacgaactga      1800
     ataccgtgat cctagcccca gcatcggtgt aaatgcaccc acgaaagcag aaatwcggat      1860
     agcactgaag cagatcaaaa atgggaaggc accaggagca gataatataa catctgagat      1920
     gttgaaaaca gacttggaca ccactgttga gttattgtac atcctcatag ggaagatatg      1980
     gaaagaggag aaactgccaa cagactggaa acgaggtatt atcgtgaaaa tacccaaaaa      2040
     aggagatgtt actaactgta acaactggcg gggcattacc ctattgtcag taccgagtaa      2100
     ggtactttcg aggattattt taaaccgcat taaggattct gtggaaacgc aattgaggag      2160
     agagcaggcg ggttttagaa aacatcgaag ctgtgtggac cttatcaata ctctccgaat      2220
     tattctggaa caaagtgcag agtggcaaca cactctctac ctaaccttcg ttgactttga      2280
     aaaggctttc gactctgtca atcggagagt catgtgggat acacttgcaa agtacgacat      2340
     cccaacgaag atcattaaca tcatcaagga aatgtatcag gactatgaat gccaagtact      2400
     acataatgga gaactgacag agcctttcca agttaattcg ggagtacgac aaggctgtat      2460
     tctctcgcca acattatttc ttttggtttt ggatcatgtg atgaagagag taatgagggg      2520
     acggcagaga ggtgtgcaat gggggatgcg ggatacgcta gaagatctag atttcgcaga      2580
     cgacatctgc ttaatggcac agcgatatcg agacatcgaa gagaaactgg ccaggttaca      2640
     gagagaagga gaagctgcag gcctcaagat aaatgttcgc aaaaccaaag aaatgcggat      2700
     aaactcgacc accaccacta ggctgaccat taatggagag gatgtagagc aggtccaatc      2760
     tttcctctac ctcggaagta tagtcacgac tacaggaggc gccgaggagg atgtccgtag      2820
     tcgcatccgc aaagcaaatg gtgcgtttgt ccagctgtac cccatttgga gaaacaggaa      2880
     catttcaagg aaaacaaaac tccggctttt caatagcaac gtgaaggcag ttctgatgta      2940
     tggttgcgaa acttggaaag tgactaacca catcaaaaac cagctccaag tttttattaa      3000
     ccgttgtctc cggcgtattt taaacgtaag atggccaaat ataatgacaa atcaagatct      3060
     ttggagagag acaaatcagc aaccaatcaa catacaaatc aaggaaagaa aatggaaatg      3120
     gattgggcat acattaagaa aacctgatga agctattgaa aaggtggcgt tggactggaa      3180
     ccctcaagga gttaggaaac gcggtcgtcc caaacacacc tggaaaagaa cgatccagag      3240
     agaagctgca gaggatggga aaacctggag tgaagtgaag agacttgcca gaaatcgcat      3300
     caggtggaga aatttcgttt cggccctatg ttccagaggg aacgacagga actaagtcaa      3360
     gtaagtcaa                                                              3369
//
ID   RTE-43_LMi  repbase;    DNA;    INV; 3097 BP.
XX
AC   .
XX
DT   17-APR-2014 (Rel. 20.01, Created)
DT   17-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-43_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3097
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 291-291 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(536..1438,1275..1580,1584..1712,1727..2362,
FT                 2253..3023)
FT                 /product="RTE-43_LMi_1p"
FT                 /translation="NFREDMEEVTNNIPEXHVKILMGDFNAQLGKERKYRQ
FT                 ITGPHSAHIRTNKNGEHLIKYCQNFNLKIMSTQFQKPRRKLTTWKAPNTVW
FT                 GEFQIDHVAISKKSTQEILNVRMRKGFFESDHYLLQVKIRPIPRQKRAIQN
FT                 KIVKPDPEYLKINRDKIVEEINRHSTDTWTDFAKKVQKAMRWGQPPRKRKH
FT                 RWWNSNCDLAIERRLQAWKKFSSNRTSETWKEFHEVQKQSSKEIRREKRAY
FT                 DNNRLKEIEEDFKRNNTRNFYRTFKENIKGYQPPSLCFRAGSLETNTKENE
FT                 NSQTILDEFRKLRKISREITQEIFIELSKKILRAISLLVFASELDPWKQTR
FT                 KKMKILKQYLMNSKFQKPTENLHSKNPHPPPTIEEIRKPKTMKNNRAQERM
FT                 YYARCGSPRKHYHRIWVTEKCRGMEMSLIHPYTKRVISRSKNSSSSGIQNF
FT                 LTTRTTSRSTNREYQAGFRKGRSCXEQIWNLRTLLKVRQTRNTVVAFVDFK
FT                 KAYDSIDRQTLFDVMEEYGIDNKTRKLIQQTLTNTTSKIKFMGEISEPFQI
FT                 HTGVRQGDGLSPVLFNMVLDKIVKQWEKQVKGIQLGRTRETKTIVKCLAFA
FT                 DDIAILSNNTQEAKEALECLHEIAAKTGLQISYEKTHGTTDQQCTHNAYDV
FT                 WIHKKSGKILPKRVYRYRTRRHMERQTNNVHTMHTMYGSIKRVEKFKYLGE
FT                 YIEMGGSNKESNRERTEKLQKAYKLTWSHYNKKSISRLAKLRHYKTVVLPE
FT                 ALYASETTTIGASGITETEKIERKILRKIFGPIHRDGIWMKRPTKELYQYT
FT                 DRLTDMIRKRRLTFYGHIQRMGKTRLTKRIFDVVSSSSQKTNWYHEIEEDL
FT                 RQLGINRQMIGDRKEFRNKIKNAKLMVREKKKTGTLWTEERKQEHSQRMKR
FT                 FWEEKRKKGKK"
XX
SQ   Sequence 3097 BP; 1268 A; 577 C; 624 G; 625 T; 3 other;
     aacagtcaag accgaaatta catgatcttt aaactaactt caactggaag tgattatgat        60
     ggaaaamgag gaaataaatc cgctactcca ggcccagtca atgcactgga ctttcctggt       120
     catcggattt gggggaccag gaacatcata aggagagtcg gagcttctca aaatctaatt       180
     gtacttcaat gttagcaccc tagtcaaact tggaaaacta aaaaactcac agatctgcta       240
     gaaaaatttc acataaaaat tcttgccatt caagagacgc gcttcacgga tgaaaaccat       300
     ttcaacacag aaaattacag gatttacaaa gggaaacctg agtcagaaga ggcacaccgg       360
     cactgtttgg tacgaatttg ccgtacacaa ttcagtcttg gtaacatcgt agactccaat       420
     tcactatcag aacgtatttc cacactttcc ttcaaatcag gtaataaaca tacacagtta       480
     tcatgcacat gcacctacaa atgaccataa taggaaaaaa gccacaagaa gttgaaactt       540
     ccgggaagac atggaagaag taacgaacaa cataccagaa wgacatgtaa aaattttaat       600
     gggagacttc aatgcacagt taggtaagga gagaaaatac agacaaatca caggtccgca       660
     ctcagcacac attcgaacaa acaaaaatgg ggaacatctc ataaaatact gccaaaattt       720
     taacctcaaa attatgtcaa cccaatttca aaagccaaga cgaaagttga caacatggaa       780
     agcacccaac accgtgtggg gcgaatttca gattgatcat gtggccattt ccaagaaaag       840
     cacacaggaa atcttaaatg tcagaatgcg taaaggattc tttgagtctg atcattattt       900
     actacaagta aaaattaggc caatcccaag acagaaaagg gcaatacaaa acaaaatagt       960
     caaacctgat ccagaatact tgaagataaa cagagacaaa atcgttgaag agattaatag      1020
     gcattcaaca gacacttgga cagattttgc taaaaaagtt cagaaggcaa tgcgctgggg      1080
     gcaacctcct agaaaacgga aacatagatg gtggaattca aattgtgatc tagccattga      1140
     gaggagacta caggcatgga agaagttcag cagtaacaga acttcagaaa catggaagga      1200
     atttcacgaa gttcagaaac aatcatcgaa ggaaataaga agagaaaaac gagcatatga      1260
     caacaatagg ctaaaggaaa ttgaggaaga tttcaagaga aataacacaa gaaattttta      1320
     tagaactttc aaagaaaata ttaagggcta tcagcctcct agtctttgct tccgagctgg      1380
     atccctggaa acaaacacga aagaaaatga aaattctcaa acaatacttg atgaattcta      1440
     aattccagaa acccacagaa aatttacatt ccaaaaaccc acaccccccc ccaacaatag      1500
     aggagataag gaagccaaaa acaatgaaaa ataacagagc acaggagagg atgtattacg      1560
     cgagatgtgg aagtccaaga taaaaacatt atcacagaat ttgggttaca gagaaatgcc      1620
     gaggaatgga aatgtcattg atccaccctt acacaaaaag ggtgataagc agatccaaaa      1680
     attctagtag cagtggcata caaaactttc tctaagattc tattaaacga ctagaaccac      1740
     aagtagatcc acaaatagag aataccaggc aggcttcaga aaaggaagat catgcatkga      1800
     acagatctgg aatttgagaa cacttttgaa agtcagacag acaagaaata ctgtagttgc      1860
     gtttgtcgac tttaaaaaag cgtacgactc catagaccga caaacccttt ttgatgtaat      1920
     ggaagaatat ggcatcgaca acaaaaccag gaaacttata caacagacac tcacaaacac      1980
     cacctccaag atcaagttca tgggagaaat ttcggaacca ttccagatac atacaggtgt      2040
     ccgacaagga gacgggctct ccccagtctt gttcaacatg gtcctagaca aaattgttaa      2100
     gcagtgggag aaacaagtta aaggaataca gctgggaaga acacgtgaaa caaaaaccat      2160
     cgtaaaatgt ctagcatttg cagatgacat agccatactc agcaataaca cacaggaggc      2220
     aaaggaagca ctggaatgtt tgcatgaaat agctgccaaa acgggtctac agatatcgta      2280
     cgagaagaca catggaacga cagaccaaca atgtacacac aatgcatacg atgtatggat      2340
     ccataaaaag agtggaaaaa tttaaatact taggagaata tatagaaatg ggaggatcaa      2400
     acaaggaatc taacagagaa cgcacagaaa aactccagaa agcatacaaa ctcacatggt      2460
     cacattataa taagaaaagc atatcaagat tggccaaact tagacactac aaaacagtcg      2520
     tattaccaga agcactgtat gcgtcagaaa cgaccacaat tggagcatcg ggcatcacag      2580
     agacagagaa aatagaacgt aaaattctca ggaaaatatt tggaccaata cacagagatg      2640
     gcatatggat gaaaagacct actaaagaac tgtaccagta cactgacaga ctcacagaca      2700
     tgatcagaaa acgcagatta actttctatg ggcacataca gagaatgggc aagaccagac      2760
     ttacaaagag aatctttgat gtagtaagca gttcaagcca gaaaacaaat tggtatcatg      2820
     aaatagagga agacttaagg cagttgggaa tcaacaggca aatgatagga gacagaaaag      2880
     aattcagaaa caaaattaag aatgcaaaac ttatggtacg tgagaagaag aagacaggaa      2940
     cattgtggac agaagaaagg aaacaggagc acagccaaag gatgaagaga ttttgggaag      3000
     agaagaggaa gaagggaaag aagtgaaaat tgtgtcatca tgagatattc gagttcaaac      3060
     actgtccata agggcaaaaa tgatatgaat gaatgaa                               3097
//
ID   RTE-44_LMi  repbase;    DNA;    INV; 2808 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 20.01, Created)
DT   13-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-44_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2808
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 292-292 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           643..2805
FT                 /product="RTE-44_LMi_1p"
FT                 /translation="MTIKCKNKMYTLVNAHAPTNIDNKKNPTKVQTFWEEL
FT                 EDTIQKIPKENIIILLGDFNAQLGKERKYKNIIGEYPAHKRTNNNGIRLVE
FT                 LCQVFNLKIMTTHFKKHPKKMKTWKAPNQLLGEFQIDHIAISRREFKTIQN
FT                 IKVQKGAKIDSDHYLVKSKIKFIPNSVKNNKKPTRKNFETNNIDADTKNIF
FT                 KSKLQGETWEEMKSQIMKAAEESLPTKIKRKNIWWNDKCNEALDNRQTLWQ
FT                 KFKSNPTQINLERFREGRKIASYTIRNEKRLFEKLSLQQIQVHFTQHKSRD
FT                 YYQSFKRHLNGYEPPSLNFRDKSGKLGTNDQENCNILAHYFKDLLNCKAPP
FT                 EKPEFKTTEEIPAESHPPSLDEVRQAIKSLKNNKSSGEDGITAELLKLGEE
FT                 KVTLHLGTIIKEIWQTEKIPEDWRTALIHPLHKKGDRSDVNNYRGISLLSV
FT                 PYKVLSKILLNRIEPVLDAQIGEYQGGFRKGRSCSEQIINLKNIIRTRAGQ
FT                 PHVTTFIDFRKAYDSIDRESLIRTLEEFGIDRKTREIVKQTLTDTKSKVKF
FT                 RGKISDPFKIQTGLRQGDGLSPILFNITLEKIIRETLAEYTQEKVKGISFG
FT                 GSVKGLTIHALAFADDIALLSTNIXDAIKQIEILAKHAAKFGLQISQEKTK
FT                 FMSNKFKEVNKLHTIIGCIERVKHFKYLGETITDTGTEKEAVKLRVAKLRR
FT                 AQILTMKLYNKKCLSRNAKLL"
XX
SQ   Sequence 2808 BP; 1094 A; 558 C; 522 G; 630 T; 4 other;
     acctgttacg ctgtcgtaac aggcggagag gtgatactcc gacgtggcgc gtcccaggtg        60
     gcggatakgg gggtcctaac tggcttgcca gcggacttga gcgaaataaa atagctctcg       120
     cggaccaaac acaaaccctc tggattaaca ctccagttgt atctcgagca atcctcggaa       180
     agctccacca ctccaacctt acaaatktta tggattatca gtggaaaaga aaacaaatta       240
     ccccagggag taaaatctct cgacctccgg tcgcaagcag gcatttcgga ttctggggag       300
     cctgcacttt ctgctcttgt tttaccaaga caacctgaaa aacttaaatt caagamgaaa       360
     tacagtatcg gaacactgaa cattaactcg ctcatcaaaa caggaaaaca taaagaactg       420
     actcaagcac ttgagcatca tgatatccaa attctggcac tacaagaaac ccgctacact       480
     gacgaaaact cttttgaaac aggcaactac agaatttata aaggaaaacc agcagagtat       540
     atctttggaa aatgcccctt attaggtaca gcttttattg ttagaaaaaa tataacggag       600
     tccgtaataa acttcaattc tacgtccaac aggctctcaa caatgacgat aaaatgtaaa       660
     aacaaaatgt atacgctagt gaatgctcat gctccaacaa atattgacaa taagaaaaat       720
     ccgaccaaag tacagacttt ctgggaagaa ctagaagaca cgattcagaa gattccaaag       780
     gaaaacatca tcatcctact cggggatttt aacgcacagc tcggcaagga gaggaaatac       840
     aagaacatca ttggtgaata tccagcacat aagaggacaa ataacaatgg aataagactt       900
     gtggaactct gccaagtctt caacctcaaa attatgacta cacacttcaa gaaacatccg       960
     aagaagatga agacgtggaa agcaccaaat cagctccttg gagagttcca aattgaccat      1020
     atagccattt ctagaagaga atttaagaca attcaaaata ttaaggttca gaaaggagcc      1080
     aaaatagatt cggatcacta tcttgttaaa tccaaaatta aattcatccc aaattcagta      1140
     aaaaataata agaaacctac gagaaagaat tttgaaacca ataatattga tgcagacact      1200
     aaaaatatct tcaaatcaaa attgcaaggg gagacatggg aggaaatgaa gtctcaaata      1260
     atgaaagcag cagaagaatc tcttccaact aaaattaaaa ggaagaatat ctggtggaat      1320
     gacaagtgca atgaagcatt ggacaacaga caaacgcttt ggcaaaaatt taaatcgaat      1380
     ccgacacaaa tcaacctgga aaggttcaga gaaggtagaa aaatagcatc ctacacaatt      1440
     agaaacgaaa agagactttt cgaaaaatta tcccttcaac aaatacaggt acacttcact      1500
     caacacaaat caagagacta ttaccaatcc ttcaaaagac acctgaacgg gtatgaacca      1560
     cccagtttaa attttcgtga caaatcaggg aaattaggta caaatgacca agaaaactgc      1620
     aatattttag cacattactt caaagacctt ctcaattgta aagcgccccc cgagaaaccg      1680
     gaattcaaaa ctacagaaga aattcctgca gaatcacatc caccatctct agatgaagtt      1740
     cggcaagcta taaaatccct caagaacaac aaatcttctg gtgaagatgg aatcacagct      1800
     gaactgttga aactaggcga ggaaaaagta acactacacc tcggtacaat tattaaagaa      1860
     atttggcaaa ccgagaagat cccagaagat tggaggacgg cacttataca tccactccac      1920
     aaaaagggtg acagatcaga cgtgaacaat tacaggggga tttcccttct atccgttcca      1980
     tacaaggtcc tttccaagat attattaaac agaattgaac cagttctcga tgcacaaata      2040
     ggagaatatc aaggtggatt tagaaaaggg aggagctgtt cagagcaaat tataaatctt      2100
     aaaaacataa ttagaacacg tgctggtcaa ccacatgtta caacatttat tgattttaga      2160
     aaagcatacg actcaataga cagagaaagc ctcattagaa ctctggagga attcggaatt      2220
     gataggaaaa ctagagagat tgttaagcaa acattgacag atacaaagtc caaggtgaaa      2280
     tttcgaggca agatttcaga ccctttcaaa atccaaacag gtttgagaca aggggatgga      2340
     ctctccccaa tcttattcaa catcactcta gaaaagataa taagggagac attggcggaa      2400
     tacacacaag aaaaagtgaa gggaatttct tttggaggat cagtcaaagg gcttacgata      2460
     catgcactag cttttgcaga cgatattgcg ctactgtcca cgaatatacm agatgcaatt      2520
     aaacaaatag aaatcttagc aaagcatgca gctaaatttg gtttacagat atcacaagaa      2580
     aaaactaaat tcatgtctaa caaatttaag gaagtcaaca aattgcacac aattattgga      2640
     tgcatcgaaa gggtcaaaca ctttaaatat ttgggagaaa caataacgga tactggcaca      2700
     gaaaaagaag ctgtcaaact tcgagtagct aaactgagga gggcgcaaat tttaacaatg      2760
     aagctgtaca acaaaaaatg cttatctcga aatgcgaagt tactacac                   2808
//
ID   RTE-45_LMi  repbase;    DNA;    INV; 3519 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 20.01, Created)
DT   23-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-45_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3519
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 293-293 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(462..1721,1621..1890,1916..2311,2290..2994,
FT                 2985..3467)
FT                 /product="RTE-45_LMi_1p"
FT                 /translation="MMVNTHRKTTPGGKQSSITGNSDATRPLDSGEPRTSC
FT                 EEESELPRTSRIRPGIKHLLGTLNINTLLKTGKLKQLTDILNRRNILILAL
FT                 QETRYRDENAFESEGYRIYKGKPAIKNKQNASILGTAFMVKRNLTESITNF
FT                 TSPSERISLLSFRSANKGYTIINAHAPTNKDNRKNPEKVDQFWETLEDETS
FT                 KIPKHHIKILVGDFNAQVGREEKYKAIVGNFPAHKRTNKNGERLINFCRQF
FT                 DLKLMSTFFRKLPRRKKTWCSPNTHLGSYQLDHVAITKHNHREIMNVRVRR
FT                 GLGIDSDHFLTEIKTKFQPKKPNPKIKKVPRIDTKFLSDNRDKFVKKLETK
FT                 TMGNWSEIREAMIETVKELEQPPRRRKHRWWNKTCDEAIENRLTAWKKWNA
FT                 CKKESDWNTFTEIRKQTSKISSRETKQPGKNGTLAKRKATGTHSLRSENKH
FT                 QKFRAEKRNKLITNNKDNCELLAEYFKNLLNCEEATQRLIFCKLQKENSPS
FT                 DHRHCIKLRNTLASRRDSSRDVETGREAGAETIYXVIKDCWEKESIPDDWK
FT                 QAIIHPLHKKGDRTDTNNYRGISLLPVTYKIISKALLNNIEAQAEHTIGEY
FT                 QAGFRKSRSCPEQIFNLKTILRIRTMRNLNTVITFVDLKKPMIPFKKAYDS
FT                 VDRQTVFLTLQEVGVDKTTRKLVEQTLTDTTSKVKFLGEVSEPFRINTGVR
FT                 QGDGLSPILFNLVLDKVVREWERELKGKNIEGIHLGQGRGRFEVKCLAFAD
FT                 DIAIISKDKTDAKIMIETLHRTAAKTGLQISYEKTEYIEHKHNREKYLQTQ
FT                 HGNIKRVEKFKYLGEWIQSNGLDNTTSKERSRKMELAYKLTQNRYNKRSVS
FT                 FQAKIKHYATVIKPEALYGSECLTMPNLNKKGEQEELEKKERKILRKILGP
FT                 QKNKDNNWMKRRNEDLYRNIETITDXIRKRRLKFYGHVYRMKDSRLTKKIF
FT                 NFISKLKNTTGWLEETKRDLRKLNVTEDXIQDRGNFRLRIDSAKFPIQQQK
FT                 XQPRRVMSIEQRQAISQRMKKFWEDKKKXIVP"
XX
SQ   Sequence 3519 BP; 1392 A; 683 C; 731 G; 704 T; 9 other;
     actccgccac tgccggtccc aagcccgggg ccccatctca caagtgttgg ggaaggagga        60
     gggggaggag taacaacctc gttaaaaaac ctgggtccat ctggctccgg atggtagcac       120
     ccagttaggg cccccacctg gggttatagg tgaagactgg ccaacggtct cgacggcgga       180
     agaggaactt cacttcccaa cggcagagag tgcggaagag ccactgacac acatcaggtg       240
     aagaagatca acggcttcag aggcggatga agatactaat ctcaacggca aagaaggcgg       300
     atgagtcatt cacagtagcg tctgttacca aagtggtcgg ctacaaaggg cgtctgttcc       360
     catattgggc ggcctgttaa aacccatctg gcgatacgat cacagatgta acatcccacg       420
     aaggggttaa caccccttcc taatttactt ttaaccaaga catgatggta aacactcata       480
     ggaaaactac tccaggaggt aaacaatcct ccatcactgg aaacagtgat gcaactaggc       540
     cattggattc tggagagcct agaacatcat gtgaggaaga gtcggagctt cctagaactt       600
     ctcgcataag gcctggaata aaacatcttc ttggcacatt aaatatcaat actttattaa       660
     aaactggaaa actgaaacaa ctgacggaca tattaaacag acgcaacata ctcatactag       720
     cacttcagga aaccagatac agagatgaga atgcatttga atcagagggc tacaggattt       780
     ataaagggaa accagccata aagaataaac aaaatgccag tattcttgga acagctttca       840
     tggtaaaacg caacctgaca gaatctataa caaattttac atccccgtct gagagaatat       900
     cacttctctc attcagatca gcaaacaaag gctataccat cataaatgca catgcaccta       960
     ccaacaagga caataggaaa aatccagaaa aagtggatca attttgggaa acactagagg      1020
     acgaaacatc taaaatacca aagcatcaca taaaaatact cgtaggggat ttcaatgcac      1080
     aggtcggcag ggaagagaaa tacaaggcaa tagtaggaaa ttttcctgca cacaaacgaa      1140
     ccaataagaa cggagaaagg ctcatcaact tctgcagaca attcgacctg aaactaatgt      1200
     caactttctt cagaaaattg ccaaggagaa agaagacctg gtgttcccct aatacacatt      1260
     taggctcata tcagctggat catgtggcaa taaccaaaca taaccataga gaaattatga      1320
     atgtacgggt ccgaagagga ctaggaatag attctgacca ctttttaacg gaaattaaaa      1380
     ccaaatttca accaaagaaa ccaaatccca aaataaaaaa agtccctaga attgacacaa      1440
     aatttctgtc agacaatagg gacaaattcg ttaaaaagct tgagacaaag acgatgggaa      1500
     actggagcga gatcagagaa gcaatgatag aaacggtaaa agaactagaa caaccaccaa      1560
     gaagaaggaa acatagatgg tggaataaga catgtgatga agcaatagag aatagactaa      1620
     cagcctggaa aaaatggaac gcttgcaaaa aggaaagcga ctggaacaca ttcactgaga      1680
     tcagaaaaca aacatcaaaa atttcgagca gagaaacgaa ataaactgat taccaacaac      1740
     aaagataact gtgagttact tgctgaatac ttcaagaacc ttctaaactg cgaagaagca      1800
     acacaacgac taattttctg taagcttcaa aaagaaaact ctccatcaga ccaccgtcac      1860
     tgcatcaaat tgagaaatac attggccagt tgaagaacaa cagagcacca ggtgaagacg      1920
     ggatagtagc cgagatgtgg aaactgggag ggaagcgggc gctgaaacca tttatgasgt      1980
     tattaaagat tgctgggaaa aagaaagcat accggatgat tggaaacaag ccataattca      2040
     cccattacac aagaagggag acaggacaga taccaacaac tacagaggca tatctctact      2100
     tccagtcaca tataaaatta tatctaaagc tctgctgaat aacatagaag cacaagcaga      2160
     acacacaatt ggtgagtacc aagcgggttt cagaaaaagt agatcgtgcc cagagcaaat      2220
     ctttaacctg aaaacaattc tcaggatcag aacaatgcgg aaccttaaca cagtcattac      2280
     attcgttgat ttaaaaaagc ctatgattcc gtagacagac aaacagtatt cctaacactg      2340
     caagaagtag gtgtcgataa aaccaccaga aagttagttg aacagacact cacagacaca      2400
     acctcaaaag ttaaatttct tggagaagtt tctgaacctt tcagaattaa cacaggagtt      2460
     cgscagggcg atggactctc accaattctc ttcaatctgg tcttagacaa agtagtgaga      2520
     gaatgggaaa gagaactgaa agggaaaaac attgaaggaa ttcatctagg acaaggaagg      2580
     ggaagatttg aagtgaaatg tctcgctttt gctgacgata ttgcaataat ttctaaggac      2640
     aaaacagatg caaaaataat gatagaaaca cttcacagaa ctgcagccaa aaccggttta      2700
     caaatatcgt atgagaaaac ggaatacatt gaacataaac acaacagaga gaaatatcta      2760
     caaacacaac atgggaacat taaaagagtt gagaagttta agtatttggg agaatggata      2820
     caatcaaatg gactggataa caccacaagt aaagaaagat caaggaaaat ggaattagca      2880
     tacaaactca cccaaaaccg atataataaa agatcagtat cgttccaggc aaaaattaaa      2940
     cactacgcaa cagtaattaa accggaagca ctgtatggat ctgaatgcct aacctgaata      3000
     aaaaagggga acaagaagaa ctagaaaaga aagaaaggaa aatactcaga aaaattttag      3060
     gaccacaaaa aaacaaggat aacaactgga tgaagagaag aaatgaagat ttatacagaa      3120
     acatagaaac catcacagac wcaataagga agaggmgatt aaagttttac ggacacgttt      3180
     acagaatgaa agacagtagg ctgacaaaga aaatttttaa tttcatttcc aaattgaaga      3240
     acaccacagg atggctggaa gagacaaaaa gggatttgag aaaacttaac gtcacagaag      3300
     acwcmataca agacagggga aatttcaggc tacggatcga ttctgcaaaa tttcccatcc      3360
     aacaacaaaa acwacaacct aggagggtga tgtcmattga acagaggcag gccatcagcc      3420
     aacgcatgaa gaagttctgg gaagataaga agaaaaakat tgtaccatag tcttgggttc      3480
     taagcggtct ataattggcc aaattctgta ataaaataa                             3519
//
ID   RTE-46_LMi  repbase;    DNA;    INV; 3279 BP.
XX
AC   .
XX
DT   28-MAY-2014 (Rel. 20.01, Created)
DT   28-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-46_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3279
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 294-294 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(203..457,461..2044,1996..2544,2502..3137)
FT                 /product="RTE-46_LMi_1p"
FT                 /translation="MQWANSPFIGKKYNVKRPKMIQPDGLNGKRIKLRKRT
FT                 MKIGTWNIRGLRNKEGEIIRELENRKQDIMVLSETKKKGNGIENKDHILIQ
FT                 WGAKTSKGKARSISIDKEKLQKYITSWEPIDENLIKVNITLYGHKTTILGV
FT                 YAVSEDESVHTKETFFNKLNDLIEGIGNTREIIIAGDFNSRTGQQIGNKIV
FT                 GPHGENIINDNGLRLINICEQNSLQILNGFYPHKEIHKYTWHQETLQLKSI
FT                 IDYIIVRQKTVLKTQDVRAYRGAGQSDHHLVNSKIVFPYIDITRKDENVNG
FT                 EENFKTEVKIPKYNLHSLENXSTVYLYKKRLDEKLTETHFDNTDAQYKYII
FT                 NALHEAAKEALGEEMKCEKKKSLYYFDTEVEKEVQIKKEKYLKWLNTQSIE
FT                 DKVELRKQQAKIRKMVTEAKNKIWETTCNKVDTLIGGKRSSEAWKILRXLR
FT                 QNSKGTQINYISIQTWEKYFKELLTENRKEFLDTGNNDIEQTENSGSISLD
FT                 IEIVKNSIKTLKKGCATGSGGIPAELVKYGTDKLHELLRSLFEKCLNGEAI
FT                 PEDWKVGYISTIHKKGRKDECKNYRGITVTNVFSRLYGRIIKHFLETEFKG
FT                 MEAEEQAGFRAGRSLGNGGRRAGWIQSREITIDHLFCLQQIIEKKKVRNQP
FT                 LHLVFVDIEKAYDNIPLCNLWKALKAYNISPIIIKAIQNLYENSTARIKIQ
FT                 NYLSPGFKVTKGLRQGCCLSPTLYKIYTEKALENWKRKCKNMGIPVNDITI
FT                 YSLQFADDQLILAQDKDDIEYITRKLIEEYKNGDFRSTKIKQNTWKWGLQV
FT                 NKNKTKYMVIGDINQDLTLEEGMGKIKHTEEYKYLGATITQDGKQDKEINA
FT                 RINAGKCTIGTLNGILWDQQIRKETKRKYLQYIIRSIMTYGSEVWALKLQI
FT                 EKRLMATEMDFWRRSAGISRREKIRNEVIRKKMDVKNSIIDFIEGKQLLWL
FT                 WAYKKDVKGKTTTENNGMGATRKKEERETTNYMDPRNSGVYPEKEYRRKFM
FT                 GR"
XX
SQ   Sequence 3279 BP; 1410 A; 445 C; 680 G; 741 T; 3 other;
     tggagttgct agtctccatc gggcgcctcc ccaggtggcg gataggggaa tgctcactag        60
     atatagtggg taccggggaa ataaaatacc cggggtggac caaaactagc ggctgctgcc       120
     ttgtagttta gatattggtt tatcaaaggc taaaggaaga ctaccttgaa taaaaattac       180
     ctggtcctcc aggttggggg ttatgcaatg ggctaactcc ccattcattg gaaaaaaata       240
     caatgttaaa agacccaaga tgatacagcc ggatggatta aatggtaaac ggataaagct       300
     aaggaaacgg acaatgaaaa tcggaacatg gaacattaga ggactaagga ataaagaagg       360
     agaaataatt agagagttag aaaacagaaa acaggacatt atggtgctat cagaaacaaa       420
     aaagaaggga aatggcatag aaaataaaga tcatatataa cttatacagt ggggtgcaaa       480
     aacatcaaag ggcaaagcga ggagtatcag tattgataaa gaaaaattac agaaatatat       540
     tacaagttgg gagccaattg acgaaaattt gattaaagta aacataacct tatatggaca       600
     caaaactact attttaggag tctatgcagt aagtgaggat gaatcagttc ataccaaaga       660
     aacattcttt aataaattga atgacttaat agaagggata ggaaatacaa gagaaataat       720
     aattgccgga gacttcaata gtagaacagg gcaacaaatt ggaaataaaa tagtaggacc       780
     acatggagaa aatataataa atgataatgg gctaagacta ataaatatat gtgaacaaaa       840
     ttcactacaa attttgaatg gtttttatcc ccataaagaa attcataaat atacatggca       900
     tcaggaaaca ctccaattaa aatcaataat agattacata atagttcggc agaaaacagt       960
     gttaaaaaca caagacgtca gagcatacag aggagcaggc cagagtgacc atcatctggt      1020
     aaactctaaa attgtgtttc catacataga tataacacgt aaagatgaaa atgttaatgg      1080
     ggaggaaaat tttaaaacgg aagtaaaaat tccaaagtat aatttacata gcctagaaaa      1140
     tgawagtacg gtgtatttat acaaaaaaag gttagatgaa aagttaaccg aaacacattt      1200
     tgacaataca gacgcacaat ataaatatat cattaatgct ctgcatgagg cagcaaagga      1260
     agccctgggg gaagaaatga agtgtgagaa gaagaaatct ctctattatt ttgatactga      1320
     agtagagaaa gaggtacaaa taaagaaaga aaaataccta aaatggctga atacacagag      1380
     tatcgaggac aaggtagaat taagaaaaca acaagcaaaa attaggaaaa tggtaacaga      1440
     agcaaaaaat aagatttggg aaactacatg caataaagtg gatactctaa ttggaggaaa      1500
     gagaagttca gaggcatgga agatactgag aaawctaaga caaaattcta aaggcaccca      1560
     aattaactac attagtatcc agacctggga aaagtacttt aaagaattat tgacagaaaa      1620
     caggaaagaa tttttggata caggtaataa cgatatagaa caaacagaaa atagtggcag      1680
     catttcactg gacatagaaa tagtaaaaaa ttcaatcaaa accttaaaaa aaggatgtgc      1740
     tactggaagt ggaggaatac cagcagaact ggtgaagtat ggtaccgata aattacatga      1800
     acttttaaga agcctctttg aaaaatgctt aaatggcgag gccataccgg aggactggaa      1860
     agtaggatat atatcgacaa tccacaagaa aggaagaaag gatgaatgca aaaactacag      1920
     aggaataacc gtaactaatg tatttagcag actttatgga agaattataa aacatttttt      1980
     ggaaacggaa tttaagggaa tggaggccga agagcaggct ggattcagag cagggagatc      2040
     actatagatc atctattttg cttacagcaa ataattgaaa agaagaaagt tcgaaatcaa      2100
     ccccttcatt tagtttttgt tgatatagaa aaagcatatg ataatatacc attatgtaac      2160
     ttgtggaaag cattaaaagc atataacatt agccctatca taattaaagc aattcagaac      2220
     ctttacgaaa actcaacggc aagaataaaa atacaaaatt atctctcacc tggatttaaa      2280
     gtaacaaaag gattacgtca gggatgctgt ctgtcaccaa cactttataa aatatatacc      2340
     gaaaaagcac tagaaaattg gaaaagaaaa tgcaaaaaca tggggatccc agtaaatgat      2400
     atcactatat actccttaca atttgctgat gaccagttaa ttttggcaca ggataaagat      2460
     gacatagaat acattacaag gaaattaata gaggaatata aaaatgggga cttcaggtca      2520
     acaaaaataa aacaaaatac atggtaatag gagacataaa ccaagattta acactggaag      2580
     aaggaatggg caaaattaaa cacactgaag aatacaaata cctaggagca actatcacac      2640
     aagatggcaa acaagacaag gaaattaatg caagaattaa tgctgggaag tgtaccattg      2700
     gaacattaaa tggtatctta tgggatcaac agatcagaaa ggaaacaaaa agaaaatatc      2760
     ttcaatacat catcagaagc atcatgacat atggatcaga agtatgggca cttaaattgc      2820
     aaatagaaaa gaggttgatg gcaacggaga tggacttttg gagacgatct gcaggaatat      2880
     ctaggcggga aaaaatcagg aatgaagtca tcaggaagaa aatggacgtt aagaattcaa      2940
     ttatagattt tatagaagga aaacaactkt tatggttatg ggcatacaaa aaggatgtca      3000
     aaggaaagac taccacagag aataatggaa tgggagccac caggaagaaa gaagagaggg      3060
     agaccaccaa ctacatggat ccaaggaatt caggcgtcta tccggagaag gaatatagaa      3120
     gaaaatttat gggcagatag agaaaaatgg agaatgaaaa taaaataatg tgtaataaat      3180
     aataatgtaa taatattaat gtaaaatatt gtaattgtac gatcttgggg taccggaaaa      3240
     tgtaaactaa attacattgt aaaaccggac aataataat                             3279
//
ID   RTE-47_LMi  repbase;    DNA;    INV; 3421 BP.
XX
AC   .
XX
DT   29-MAY-2014 (Rel. 20.01, Created)
DT   29-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-47_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3421
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 295-295 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(152..355,310..1038,1014..1589,1652..3406)
FT                 /product="RTE-47_LMi_1p"
FT                 /translation="MKIIGTAELAEEATLQLNVQVVEDDAPLMAANMVRWY
FT                 RAAAGTSIELMHRANDASDGSRSKTHGRNQSCFRWIKIEDSWAKPIIVWFF
FT                 GHDTAMWKGNGKTTTLLYFLNVGRRRIMMAFLGVKYSGDKLLPRSDLRVGS
FT                 ISGGVIKRDEHFNLRIGTWNVRTLQRAGKLENLKREMDKCEVNIMGLSEVR
FT                 WTDSGEIVSGNYTMFYSGGKSFERGVAIVMGNELVQSLTKVVCHSDRLMFV
FT                 KISAKPVDILIVQVYMPTSDHEDEEVEKMYDEIEDIIQSEGTGKVNTIIMG
FT                 DWNSVVGQGNEANIVGQYGSKHSWTIWLGKRNDRGGMLVEFCQRNNLVVMN
FT                 TWFKKRKSKLYTWKSPGDMNRYQIDYILVKQRFRGSVKDAKTMPAADIDSD
FT                 HNLLVADISTRMKKIQQHGRRKQRWDLEKLRENNVAVRESLEKKFNEDEIR
FT                 ASAEEQWQNVKMILLNTLKSEVGRETKRARKPWITSEMLEKMEERRKCKNV
FT                 NERNTEDRNRGTTKKRKVRPHVPENEGTGEGENKSVRTFGIEDSRGQVVTE
FT                 QVEVLKTWEEYIRELYDTEHRPHDIDIEPEEAIDEDEKGPSILTSEVEKAI
FT                 KDMKSRKATGDDDIPVDLLKDIGNDSLKALTQVINKIYETGEWPKDFLDVT
FT                 MVTLEKKKQAKKCSDYRTISLISHVAKIIARLLNRRLEHKIEEVMGEDQFG
FT                 FRKGKGTRDAIGMMRILSERVLAVNEEICACFIDWQKAFDRVNWNILMNIL
FT                 KEIGINWRDRRLIRNLYLGQRVKVRLKCGETNSVEIGRGVRQGCCLSPSLF
FT                 NLYGEMLAREALKGCGNFKVGGRLINTIKYADDLVVLAKNQRQLQHMMNRL
FT                 VEMGRKYGMEINIEKSKVMRISKREKHLKIIVDNRELENVNQFKYLGCFIT
FT                 KDAHCTNEIRARIAMAKAAFNKKRTLLTSKLSLALRKKLVKCYIWSIALYG
FT                 AETWTMRKKEKKYLESFEMWCWRRIEKIKWTDRVTNDDVLRRVGEKKSILR
FT                 TILQRKANWIGHILRHEGLIHDVIEGKINGTAGRGRRRIQHLDDLKDGRSY
FT                 IRLKEEAEDREHWHHKFSVRRHGPATRQNTT"
XX
SQ   Sequence 3421 BP; 1257 A; 531 C; 944 G; 689 T; 0 other;
     gccatagccg gtcccaagcc cggttgagaa aggaggaggg ggaggagtaa cacctcgtaa        60
     aaaaccttgg ttcacctggc ccgggtgata gtacctgtga gggccccttg ccagggatac       120
     ggtgaagacc tcaacggcag tgaaggcgga gatgaagatc atcggtacgg ctgaactggc       180
     ggaagaggca accctgcaac tgaacgtaca agttgtagag gatgatgcgc ctttaatggc       240
     ggcaaacatg gtacgctggt accgggcagc agcgggcacc agtatcgaat tgatgcacag       300
     agcaaatgat gcttcagatg gatcaagatc gaagactcat gggcgaaacc aatcatagtc       360
     tggttctttg gccatgatac tgcgatgtgg aaaggaaatg gaaagactac cacattatta       420
     tatttcctga acgtcggaag acggagaata atgatggcgt ttcttggagt aaaatattcc       480
     ggagataaac tactcccccg ttcggatctc cgggtgggga gtatttcagg aggtgtcatc       540
     aaaagagatg aacattttaa tctcaggatt gggacatgga acgtaagaac acttcagaga       600
     gcaggaaaac tggaaaatct gaagagagaa atggacaaat gtgaagtgaa cataatgggt       660
     ttaagtgaag tgaggtggac agatagtggt gaaatagtat caggtaatta cacaatgttt       720
     tattccggtg gtaaaagttt tgaacgtggc gtagcaatag tgatgggaaa tgaattagtg       780
     caaagtttga ctaaagttgt gtgtcatagt gaccgtttaa tgtttgtgaa aataagtgca       840
     aaaccagtgg acattctaat agttcaagtg tacatgccaa catcagatca tgaggatgaa       900
     gaagtggaga aaatgtatga tgaaatagaa gacatcattc agtctgaagg aacaggaaag       960
     gtaaatacca taatcatggg tgactggaac agtgtggttg gacaaggcaa tgaagcaaac      1020
     atagttggac aatatggtta ggaaaaagaa acgacagagg aggaatgcta gtggaattct      1080
     gtcagcgaaa taacttggtg gtgatgaaca catggttcaa gaaaaggaag agtaaactgt      1140
     acacatggaa gagcccagga gatatgaaca gatatcagat agactacata ctcgtcaaac      1200
     agaggtttag gggtagtgtg aaagacgcca agaccatgcc ggcagccgat atcgactcgg      1260
     atcacaacct tttggttgca gatatcagca caaggatgaa gaagatccaa cagcatggga      1320
     ggagaaaaca gagatgggat ttggaaaagc taagagagaa taatgtggca gtaagagaat      1380
     cgttagagaa aaagtttaat gaagacgaaa tacgtgcaag tgcggaagag cagtggcaaa      1440
     atgttaaaat gattttgtta aatactctga agagtgaagt agggagggaa acaaaaagag      1500
     cgagaaaacc ctggatcacc agtgagatgc tagagaagat ggaggaaagg aggaagtgta      1560
     agaatgttaa tgaaaggaat acagaagact aaacaatgcc ctcaggaggg aaacagacaa      1620
     agcgaaggaa aagtactaga gaaatgtgtg aagaaataga ggaactacaa agaagaggaa      1680
     ggtacgacct catgtaccag aaaacgaagg aactggggaa ggcgagaaca aaagtgtaag      1740
     gactttcgga atagaagatt ctagaggaca agtcgttact gaacaagtgg aagtgctgaa      1800
     aacatgggaa gaatatataa gggaactata tgatacagaa catcgcccac atgacatcga      1860
     catagaacca gaggaagcta ttgatgaaga cgaaaaaggg cccagtatat taactagcga      1920
     agtagagaag gcgataaaag acatgaagag taggaaagct acaggagatg acgacatacc      1980
     ggtggatttg cttaaagata tcggaaatga cagtttgaaa gctctgacac aagtcattaa      2040
     caaaatctac gaaactggag aatggcctaa agactttttg gacgtaacaa tggttactct      2100
     tgagaagaaa aaacaagcca agaagtgtag tgattataga acaattagtc tgatctcaca      2160
     tgtggcaaag atcatagcaa ggttactaaa tagacggtta gaacacaaaa ttgaagaagt      2220
     gatgggagaa gaccagtttg gctttaggaa aggaaaaggg accagagacg ccattggcat      2280
     gatgaggata ttgtcggaga gagttttggc cgtcaacgaa gaaatttgcg cgtgttttat      2340
     agactggcag aaggcctttg acagagtcaa ttggaatata ttaatgaaca tccttaagga      2400
     gataggtatc aactggagag atcggagact aattaggaat ttgtacctgg gacaaagggt      2460
     aaaagtacga ctgaaatgtg gagaaacgaa cagcgtggaa ataggaaggg gagtgagaca      2520
     aggatgttgt ctgtcgccaa gtctcttcaa cctgtatgga gaaatgctgg cgagagaagc      2580
     gctgaaagga tgcggaaact tcaaagtagg tggacgtctc atcaacacca tcaagtatgc      2640
     agacgacctg gtagtgctcg ccaaaaacca gagacagctg caacacatga tgaaccgttt      2700
     ggtggaaatg ggaagaaaat acggcatgga aatcaatatc gaaaaatcaa aagtgatgcg      2760
     aatatcaaaa cgtgagaaac acttgaagat aattgttgac aatcgggaac tggaaaatgt      2820
     gaatcagttc aagtacctgg gatgttttat cacaaaggat gcccactgca ccaacgaaat      2880
     ccgagcaaga atcgccatgg ccaaagctgc tttcaacaag aagaggactc tgctgaccag      2940
     caagttgagc ttggcattaa ggaagaaact ggtaaagtgc tacatttgga gcattgcact      3000
     gtatggagca gagacgtgga ccatgagaaa gaaggagaaa aaatacttgg aaagctttga      3060
     aatgtggtgc tggaggagaa tagagaagat caagtggaca gatcgggtga caaatgacga      3120
     tgtactgaga agagtaggag agaagaaaag tatactgcgt acaattcttc agagaaaggc      3180
     caactggatc ggacacatac ttagacacga gggactcata cacgacgtca tcgaagggaa      3240
     gatcaacgga actgcaggac gaggaaggag aagaattcaa cacctggatg acctgaaaga      3300
     tggaaggagc tacatcagac taaaggaaga agctgaagac agggaacatt ggcatcataa      3360
     attctccgta cgaagacatg gacctgccac taggcagaat actacataat aataataata      3420
     a                                                                      3421
//
ID   RTE-48_LMi  repbase;    DNA;    INV; 7308 BP.
XX
AC   .
XX
DT   03-JUN-2014 (Rel. 20.01, Created)
DT   14-SEP-2015 (Rel. 20.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-48_LMi.
XX
NM   RTE-48_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-7308
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Direct Submission to Repbase Update (03-JUN-2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 7308 BP; 2257 A; 1543 C; 1290 G; 2218 T; 0 other;
     tgttgttgtt gttgtggtct tcagtccgga gactggtttg atgcagctct ccacaatacc        60
     ctatcctgag caagcctctt catctccaca taagaacggc aacctacatc tgtctgaatc       120
     tgcttactgt atccatctct tggtcttcct ctgcggtttt taccccacac acttccctcc       180
     aacgctaaat tcacaattcc ttgatgtcta agaatgtgtc ctaccaatct atcccttctt       240
     ttagtcaagg tatgccagaa atttcttttc tccccaattc tgttcagtac ctcctcatta       300
     gttacgcgat ccacccacct aatcttcagc attcttctgt agcaccatat ttcaaaagcc       360
     tcaatcctct tcctgtccgc actgtttatc gtccatgtct cactcccata caaggcaaca       420
     ctccatacaa atgccttcag aaaggacttc cttaggctta aatcaatatt cgatgttaac       480
     aaatttctct ttttcaagaa cgcttttcta cccattgcca ttctgcattt tatatcctct       540
     gtactgcgac catcatttgt tattttactg cccaagtaac aaaactcaaa aaacataaaa       600
     gtggtaaatc acgctattgg cagttttcaa aaactgttgg taatgagttt tgcgtgtacg       660
     gatacgatcg gcaaaccaaa tttctgtcct cacaaaagaa gcactccgcg tcactaaaga       720
     aggtgacttt gtgattgttg cggtgtagta cgccacgggt aagcacccta gcatcaaaaa       780
     ctcgctgaag agtgctgtat gaactacatg agcactttac tgtgcacaca acaggttgtc       840
     aacataattg gcacctccat cacgacaggc tccagcacat tcctcgcact ttttcagact       900
     ttttggcgaa aacaagtttc tcggttttca acaggcctcc tggtatgccc tcccccctgc       960
     gacttctggc tgttccccaa acagaagagg ccttgacagg aacgccattt cagacaagag      1020
     aggacaccat gacaacaaca gtcaagctaa actccaaccg aaagacgttt tctcggccat      1080
     ccccttgcac ctctattgcc gtcaacgtga aactgcaagg aattagggct cctacagaga      1140
     catagagacc gtcgatatcc ttctctcgat ttcgaggctc ttcccttgca ccatatcgtg      1200
     agagtgagga gatgcatagg gattactaaa atataataat aaaataaata aaataaaaaa      1260
     aataaaagct tgaaacactc tcaaaacaat atcttgctta tttgttttca aaaccattga      1320
     agaagactaa tataactggg tgaatttgct tgcttacaaa cacaaattaa aattctttta      1380
     gaaacaagta acaaacagca aacagctaca attttcattt caacaccaag atagacttca      1440
     ccatacaggt ctgcatttcc tggatgaagc agtttctaat ggccacgagt ccatacattc      1500
     catgactcta gccttacaga cacttgtcgt gatattagtc attaaaattg ttctctagtt      1560
     ctgttaatta ctcccaaata attagtatag ccgcggactc tgaaccagta agcattatac      1620
     gctacataaa atgggaaagg ttttattctc tctcaagtct ccgagcagga gtgatttttc      1680
     accacggtaa acgacgccca gcgaaaagaa ttggagaaat acaggttact cctctccttt      1740
     tgacactccc aatacgtgat cagaggttcg ttaacaccac atcatgccgt tcaacgaaag      1800
     agtggagaag ttggtgcttt aatctgtgaa aatgacacac actccgacga tcaggaatta      1860
     tacgccttcc tctgtttctc tcgtttccgg tgaaatactt ttcatgaaaa tttaatcgca      1920
     cgaaactgtt caaatcggct gtctgtctac tgacgaattt cgcattacca tgagttaata      1980
     ttcagagaca cgtatctttt cccagctcat tgtctagggc agttgtacac gcgaccgaca      2040
     ctggtttgag tggcgaatga atcgtatggt ggactcagag acgcgaaatt tgacggctat      2100
     aaggcgttcc tttatttgga acactgtcta gcacaatgac gcagctctca aatgatgttt      2160
     ctgttatgta tgtatttggg tctagttacc ttccgcttcg tgatgtcaac ctgattatag      2220
     aaaccctgac aaaagatatc agtagctgtt tcgaggaaca ccctattatg tggctgacaa      2280
     tatacacaga tgtgtccaaa agacttggaa cagcgatatg tacagataca gatggtggta      2340
     gtagccaaat acaattggca acatataaat caaatgtaaa ttaatgatca gcctgtactg      2400
     aaagtaatat gtgtgtttgt aatttttatt tcacccgaca ttctaattct ggataatttg      2460
     ttcctgatta ttaattaatt atatgagaaa tgattgtagg tattttctgt ctctattaat      2520
     aactacgaga tttaaatgtc ccgaataatt ttcttggaac acgtaactca acgtatttca      2580
     cgccaggtga taaagaccta ggactatatg ggtgagctta ctgaggtacc ttgcactaca      2640
     gaacagcaat gtacaagaag tgtaaagccc atgttgcaac tgggaaacaa aaagacagca      2700
     gtggtccaag tatcggtaag ctcagctttg gatacgagaa aacatagcgc gaaaatccac      2760
     attgttattc aaatgatcat ttagatacga atatgtttca tttatacttt acgggtcggg      2820
     ttatactcta ccagtagggt gtatatgaat actgaaaggt ttttgacgcc ttataaagta      2880
     atatattcga gaaatcaata gaaacataac ttctcggagt tgcagattgg tagtcatttt      2940
     aatctatcta aatatataca gtactatatg gaacttcaag caaaattgca cgcttggtcc      3000
     taaaactatc agaaaggttc tggcgtgtgc acatacctcc actcactaag atgaagggtt      3060
     agaatttttc tacgaatgtc tgaaagaaac ctgtgaaaaa ggcaggtatt gtcttataaa      3120
     ttcataactg gagactttaa tgccaaagtt ggaacgtaca aagaaggtga ttcagttgtt      3180
     ggcaaatatg aaatagacaa aagaaatgac agaggagaga gattggtaca atatgcagaa      3240
     tgcttgaaaa cacctattgt gaatatgttt ttcaaggagc acacgggagg agtcctaact      3300
     ttgaagtgag aaacgagata gacttcattt taaccaatag gctgccaaac ttcaaaggtg      3360
     acactgtgtt aaacaaagac aagcagtgat cattgattag taagagcaag atttgaattt      3420
     aatacaaaat ttgaaagatt acaactaatt aaaggaaaaa gaaaaatttt aatgacagta      3480
     tatggaaaat tatgtttcaa gaaagagtta agagaacatt aaaagattgt gaagcagaag      3540
     aactaagcaa acctactaat cacacagctg aagtattggg taacttatgt aaatgtcaga      3600
     aacaacccaa gaaactgact aattaaacaa taggtttgat gaacaagagg agagaaatga      3660
     aagttgatag aaagatatag aatatgctga gctgtgcaaa cctatgagaa agagcatgaa      3720
     agaagacatc acgaagtatg aagaagacac tctaaaagcc agtcttgaga ataaatctag      3780
     ttttaagaaa gccacgagaa tgcttatgat tggaagatat caattaatag actcagatta      3840
     aggccgaatt acagacaaga aaggaaaact cgaatatagt ggaaattact atagtaacct      3900
     acgcagtaaa atgaatgacg aattcctaga cgaattggat gcttctctct cccaaattcc      3960
     agaaatattt ccatcagaag tcaaacatgg aatagacaat atgaaaaaag ttactgctcc      4020
     aggcagtgat gacctctcaa tcgatatttt aaagctgatg gatgaagact ctttaaagca      4080
     tttagctagg attttttcag gttgtttgca tagtggaaca atctcaagag actggaataa      4140
     agccaaaata atgttaatac ataataaagg tagtaccata tatatagaga actatagctt      4200
     tacagcttac gctccgtagt gtacgaagtt tttccaagaa tcttgtgtaa cagattgaac      4260
     actacaatcg accagtctca acccactgag caagccaggc tccgaacagg atttcacaca      4320
     attgaccata tctacaccct aagagaaata attagcacaa taaatgagca cctcttagcc      4380
     ttgattttat agattttgaa aaggctgccg gccgcggtag ccgaggggac tgcagcgcgc      4440
     tattcacggt gtgcactgcc actacggtcg ggggttcgaa tccccctcgg gcatggatat      4500
     ttgtgccgtc cttagtgtta gctagttcat aagtagtttg taagtttagg gactgatggc      4560
     ctcgtagata agtcccataa gctatacata catttgatca tttgatttga aaaggccttt      4620
     gattcgatca gtcactcagc tatgattgcg gctctaaagg aacaatcaat agagcagggc      4680
     tatattaaac tcttacataa cgtttataaa acctccacag cctttgtgag cgttgtcgga      4740
     gaaacccatg aatttcccat caagaagggt ggaaaacaag atgactctgt atttcccaaa      4800
     ctattttcag cagtcttaga aaaagctttg tcggatttga attgggtaga aaagagaatt      4860
     caagttctct gaaaaagaca acaatttgaa gtttgcagat taatgtgtcc tatttgcaaa      4920
     caacatgtaa gaacttcaag tattacttga cgaacttgca ttagtatgtt aatgaagttg      4980
     gactaaaaat gaacactgat aagaccaaga taaagatcaa cgaatggaca ccgcgggcaa      5040
     gtacatcgat tgcaagtaca taactgcaaa gagtcacata atatgtctac ctgagtcaac      5100
     tgataaacat gtaagtagat ttaaaaccag gaatattaca aagaattaaa ttgggctgca      5160
     atcctacaga agacattctt aaattttcag atttaaaatg tctgttgaac tgaagaaaat      5220
     aatttatgcc agtaataact tatggctttg tggtcttcag tccgcagact ggtttgatgg      5280
     agctctccat gccaccctgt cctgtgcaag tctcttcatt tgagaataag ttcggcagcc      5340
     ttttgaagct gcttactgta ttcatccctc ggtctccatc tacgattttt gccccacaca      5400
     cttccttcta atgctaagtt gatgattcct tgatgtctca gaatgtgtcc caccaatcta      5460
     tatcccagga tatgccagat gctcctttcc tccccaatat ttggttaaac acctcctcat      5520
     tagttacgtt atctacccat ctaattttca tcattcgtct gtagcaccac atttcgtaag      5580
     cttctatcat ctttttgtct gaactcctta tcgtccataa ttcacttcca tacaatgata      5640
     cactccagat aaatgctatc agaaaggacg tcctgacatt tgaactaata ctggatgtca      5700
     acaaatttcg cttcttcaga aacgcttttc ttcccatagc cattcgacat tttatatctt      5760
     ctttacttcg gccatcagaa gttatcttgc tacccaagta acaaaactca tctactactt      5820
     ttattgtctc attatctgac ctaattcctt ctgcatcacc tgattttctg acgctgcatt      5880
     tcattatcct tgttttactc ttgtttacgt tcttcttctt ctgtatttct gtccaccgtt      5940
     tcggccaatc cttgcctaat gctccctctg aaactctgaa ccatctctgg ttccatcaat      6000
     ttgtccaggt aacatctcct aagttatcta tctttctgcg gtctcttaag ttttaatctg      6060
     cagttcataa ccaacaagtt atggtcaaag tctacgtctg ctcctggata tgtcttacaa      6120
     tttgaaacct gatttctaaa tctattcttt accattataa agtcaatctg gtaccttcca      6180
     gtatctcctg gtccctccca cgtatacagc cgtctttcat gatgattaaa ccaaccgttg      6240
     atcattaaat tttattctgc acataattct accaattctc ttctttcatt cctttttccc      6300
     agtcaatatt cacatttcct tctcttccat ttcctactac tgagttgcag tcccccgtta      6360
     caatcaagtt ttcatctccc ttaattttct gaataatttt tttttaatcc tctcatacat      6420
     ttgttcgata tcctcatcat cagcagagct agttggcata taaacttgta ctactgtggt      6480
     tggtgttggt tttgtgtctg tctttgctat gataatgcgt tcactatgct gttcatagta      6540
     acttacccgt aattcctatt ttcttattca ttatcaggcc tactcctgcg ttaccaaaaa      6600
     ctgattttgt atttataacc atgtactcac gtgaccagaa gtcctgttca tcctgccacc      6660
     gaacgtcact aattcctacc atatctaact ttaacctatc catttctctt ttcagatttt      6720
     ctaacttacc tacacgatta agggttagag cattccacgc tccgacctgt agaatgcctg      6780
     ttttgttttt cgcgatgacg acatcctcct gagtagtctc cgcccgaaga tccgaatggg      6840
     gtactatttt acctccggaa tatttaatcc aagaagaggc catcatcata tattcttaca      6900
     gtagagctgc atggtctcgg gaaaagtatg tttttcagcc tttcgcagta actgcaaggc      6960
     aaagccacat tagctgatgt tacaagcata tttgttaatt acaaatacat taaaagtccg      7020
     acagttcggc acgttcggca ccgaaccggt gccgaattat cgaaaatgcc ggtcgtcgga      7080
     ctctcggacg atacctttta gtatgattta agctaacgta tacagcgaaa acggttgtaa      7140
     catgatgttt tgtacttaaa aattgattgg tagaatcatt agattaataa aatcagctca      7200
     aaattacgat agcaggtacc aattttttat tcaatacatt tactttgggt aggctatgtg      7260
     tattgtacaa tattttagat aactaaaaaa aactcgagtt tgtttttc                   7308
//
ID   RTE-49_LMi  repbase;    DNA;    INV; 3182 BP.
XX
AC   .
XX
DT   10-JUN-2014 (Rel. 20.01, Created)
DT   10-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-49_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3182
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 156-156 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 3182 BP; 1363 A; 469 C; 590 G; 754 T; 6 other;
     ttactttsgg aattcaggga ttactttgga ttccctactc tttacaattt acagcttcaa        60
     gtccaaaatg gaaagttcgc acaatggatg ctctacccca ggcggtaatt ctgatgagga       120
     atccaccatt acatcatgta atgcaatggg acctaggatt ctggggagtc ccaacattgc       180
     agtgaagaag agatggacta tattgaaaag tcttcaagtt tcagttcaaa agaataccac       240
     tttggaacat taaatgtaaa ttctcttctg aaaactggga aacaaaagga attagaatta       300
     tttctgcaga agaacgatat acaaattata gcagtccagg aaacacgatt cttagatgag       360
     aatgtagttg atacacaaca ttataggatt tataaaggga aaccagcagt gagaataatg       420
     ggaaacatgc cgatgtttgg aacagcattt tatgtaaaga aaaaaatcgt agcagtgtaa       480
     cagaatttag atcaaattca gaaagaatat ccatgttaac aataaagtgc aagaataaaa       540
     gttacaccct cataaactgt catgcaccta taaatgctga caacagaaga aatctggaga       600
     aagtaaacca attctgggat cttttagaat ctgaaatttc tatcatacct aaaaagaacg       660
     ttaaaatact tcttggtgac ttcaatgggc aaattgggag ggaaaagaaa tttaggacta       720
     ttgtaggtga atatccagca cactcaagaa caaacagaaa tggtgaaaga ttgatcaata       780
     tgtgtaaaat gttccaatta aaactcatgt ccacacattt ccgcaaacta ccaagaaaag       840
     ccaaaacttg gaggcatcca aatccaaacc taggagaatt tcaacwggat cacgtagcca       900
     tatctaaaag gtatatcack gaaattatga atgttaaaat agacagaaat gkggaattcg       960
     attcagatca ttatctctct aagattaaaa taaaatttct mccatctaaa acaaaagagg      1020
     cgaccaagaa agtgatcaga tacaacagca ctacagctaa tattacaaaa gaaaatatag      1080
     aaaaatttag agaagaaatt gagacaagta aagaaggcga ttggcgtgaa ctccagatac      1140
     aaataactca agcagcagag aaaactttag gattggccaa gaataaaaag aagacatggt      1200
     ggaatgagga gtgttgaaga agcactaata caaagagctc aaaaatggag aaaatgagat      1260
     gttcgaaaaa agaggaagtc cttgaacaat tcagacaaca aagaaaagaa acatcaaaag      1320
     taatccggaa aatcaaaaga aactttgaaa ttctcagctt attgaaacag aagaaaattt      1380
     caccaaaaat aatactagaa atttttacca aacttttaaa aacatactta aaggatatca      1440
     gacactaagt atttgtttca aagatgaaaa tggcaaaatg ggattaaata acaaagaaaa      1500
     tggtgaaatt taaatttttt ctttaaactg caacaatatt tccagtgcac ctaaaatcta      1560
     gaggaaaatt tccaccaaca gagttaaaat tcatgaagcc atcaaaacac tcaaaacaat      1620
     aagcaagtgg tgaagctcca tacgcagaat tattgaagtg gtcagaacca aaaatcatga      1680
     aggatctaca gctgcttttg agaacatttg gaaaactgaa aagattccag ttgaatggaa      1740
     aacagcatta atccacccgc tacataaaaa gggagacaaa caaaatgtca ataattacag      1800
     aggagtgtca cttctgccag tggcatacaa aatattatca aaaattctcc tgaacagagt      1860
     ggtagatact ttagacaaac aactgggaga atatcagggt ggttttcgaa agggaagatc      1920
     ctgtgcagaa caaattttta acttaaagtc aataattcgc catagaatgt taaccagtaa      1980
     tagtgtcatt tattgatttc aagaaagcat ttgattgtat agacagagaa acaatagata      2040
     aggtcattag agaatttggt gttaaatcaa aattagcaaa tataattcgt gaaacactaa      2100
     caggtacaat actgtaacta aagtcaaatt tatgggggaa gtatctcagc catttgaaat      2160
     aaaaactggt gttagacaag gcgatggttt atcaccttta ctgtttaatt gcgttctaga      2220
     aaaaactgta aggatctgga attcggagct aaaawatcac aaaattgaac caataactct      2280
     gggaaggaaa acaaatggaa ttaaggtaaa ctgcttggct tttgcggatg attttgcaat      2340
     actttcagaa aacctgacag aagcagttat tcaaataaac cttctggaaa aaatagcaaa      2400
     cagaactggt ctcaaaattt cagctgaaaa aacaaaattc atgacaaatg taaaaaatgc      2460
     gccaaaattc atagaaacac aaataggtaa aatagagcga gtaaataaat ttaaatactt      2520
     ggagaaacta tacaacagaa tggactagaa aaatctgcaa tagatgtaag aattaacaaa      2580
     atggaaagag catatggttt gactaaaaat atttacaaca agaaatgtat atctagaaaa      2640
     acaaaactaa aacactacac cacagtggta cgaccagaat gtttatatgg atctgaatgc      2700
     ctaacgatga actataagat ggataaacta gaggtactgg aaagaaggat tattagaaaa      2760
     ataatgggtg caataaaaac tgcagatggt tggaaaataa gaagtaatga ggagatctac      2820
     aaaaatatag agaaaatatc tgaagtaatg gccaaacgaa gattaacctt tttcggacac      2880
     ctctaccgaa tggatggaaa tagactaaca aaacaaatac tcctatattt ctggaagaag      2940
     aaatcgacaa tagcatggat tacagaagta aggaaagatc tagaaagaaa caacatcaaa      3000
     gaatcagaaa tagcagaaag aaaccgtttt aaaaataaaa tactaaattt ggaaggcttt      3060
     caaagcagaa gaaataaaaa atcaggaaca acatggacag aagaaaggaa gagagctcat      3120
     ggggagaaaa tgagggaata ctggaaaaat aggaaacaac aacaaaggaa gaagaggaac      3180
     tg                                                                     3182
//
ID   RTE-4B_PPo  repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-222
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3154-3154 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 222 BP; 50 A; 51 C; 84 G; 37 T; 0 other;
     gcgcagaaca gacggccgat ggggccgcaa agtcctggaa tggcggccac ggacaggtcg        60
     acgcagcgtg ggtaggcctc ccgcaagatg gaccgatgat ctggtcaagg ttgcgggagt       120
     atcctggatg cgggaggcac aggaccgatc atcgtggcga tcgttggggg aggcctatgc       180
     ccagcagtgg gcgtcatatg gctgaataga tagatagata gt                          222
//
ID   RTE-4_BM    repbase;    DNA;    INV; 2754 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-2754
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1056-1056 (2010).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           10..2709
FT                 /product="RTE-4_BM_1p"
FT                 /translation="MGERIISQPDFLLYHIGTTPGHHGVGFIVKKYLEKSV
FT                 EEFIGISERIAMMNLKLPGYKDSWSIVQIYSPTEQSDLETIEEFYLDLNNT
FT                 IQERGHXNXIVMGDFNGQIGAKRPGEETVLGPFTYSNKIRSRNGELENNLT
FT                 ILNSVYKKNTTKMWTWISPDGKTKNEIDFIMTNTKNCFTNFDVINKFNFNT
FT                 NHKLIRAEIKSVQPKKPRPRQELTIGKLSKHQMAQLVANLRDKFTDFKKNT
FT                 NTMGTQEKYNWIENIINDQVQHIDKIRSEPRKWLTSNTMKLLEQRNQLISA
FT                 KEGKDRRRHLAKISKDIKESIRTDRKKSRMEIIEKHIAKTGGIKKAHRELT
FT                 XSNDWIAKIKNNSGEWHHNRTNILGIATSYYKKIYEHNTAQDNIYLAETSS
FT                 IPNIIQTEVTKAIDSQHRDKAPGPDGISNEILKESNEIITPVLTDMFNEIL
FT                 KTEIIPRQWTESNILLLYKKGDKYDIGNYRPISLMSNIYKVFAKVILNRIE
FT                 KILDEHQPIEQAGFRKGYSTIDHIHVVRQVMEKYKEHQCTYYIAFIDYSKA
FT                 FDSLFHEKVWESLKEQGIEHKYIRLIKNVYSQNTARIQLEKKGEPFRVGKG
FT                 VRQGDPLSPKIFSAVLESIFRALNWENLGINVDGVSLTHLRFADDIVLFAK
FT                 SSEDITRMINELSTESEKVGLKLNPEKTKIMTNGERIPINLGNNQIDYTDE
FT                 YIYLGQLITDDNPVLKEVERRITNGWRRYWGLKEIMKDKNLHMNIKSKLFN
FT                 TCVLPVLMYGSQTWALSQNTISKLASCQRAMERSMMNVKKSDRLSNRIIRS
FT                 KTKVIDIGCKIRRLKWRWAGHMVRGKDKWSKIVTRWYPRESKRKKGRPQKR
FT                 WDDDIRQVAGVTWNRVAQERHEWKRLEEAFVDWQTDLQKIRKIQIIG"
XX
SQ   Sequence 2754 BP; 1134 A; 476 C; 540 G; 599 T; 5 other;
     gtaagaagaa tgggtgaaag aattatttct cagccagact tcctcctata ccacattgga        60
     acgacgccag gacaccatgg cgttggtttc atcgtcaaaa aatatcttga aaaatctgta       120
     gaagaattta taggaatctc ggagcgcata gcaatgatga atttaaagtt accgggatat       180
     aaagattcat ggtctattgt acaaatatat tcnccaacag aacaatcgga cctggaaaca       240
     attgaggaat tctaccttga cttaaataac actatccaag aacgtggcca caanaacttn       300
     atcgtcatgg gagatttcaa tggccaaatt ggagctaagc gtccaggaga agagacngta       360
     ctgggaccat tcacttacag taataaaatt agaagtagaa atggagaact agaaaataac       420
     ttaaccattt taaactcagt atataaaaaa aacacaacga aaatgtggac atggatttca       480
     ccagatggaa aaaccaagaa cgaaatagat tttataatga ccaatacaaa gaactgcttt       540
     acaaatttcg acgtcattaa taaatttaac ttcaatacga atcataaact aattagagct       600
     gaaataaaat cagtacaacc aaagaaacct agaccgagac aggaactaac aatcggtaag       660
     ctcagcaagc accaaatggc acaactcgtg gccaacctaa gagataaatt cacagacttc       720
     aaaaagaaca caaataccat gggaacccaa gaaaaataca actggataga gaatattatt       780
     aacgatcaag tacaacacat tgacaagatt agatctgaac cgagaaaatg gctaacatct       840
     aataccatga aattactaga gcaaagaaac cagctaatca gcgcaaaaga aggaaaagac       900
     agaagaaggc atttagcgaa aattagtaaa gacatcaaag aaagtataag gacggacagg       960
     aaaaagagta gaatggaaat tattgaaaag catatagcca aaacgggagg cattaaaaaa      1020
     gctcatagag aattaacaan ttcaaatgac tggatcgcaa agattaaaaa caacagcgga      1080
     gaatggcacc ataatagaac aaatatatta ggaatcgcta cgtcctacta caaaaaaatc      1140
     tacgaacaca acaccgctca ggacaatatc tacctagcag aaacctcaag tatccctaac      1200
     atcattcaaa ctgaagtaac aaaagctata gatagtcaac acagagacaa agcaccagga      1260
     cccgatggca taagcaacga aattctaaaa gaaagtaatg aaattataac accagttctc      1320
     accgacatgt ttaatgagat attaaaaacc gaaattatcc cacggcaatg gacagaatca      1380
     aatattttac ttctatataa gaaaggagac aaatatgaca ttgggaacta ccgccctatt      1440
     agccttatgt ccaacatata caaggtattc gccaaggtca tacttaaccg gattgaaaaa      1500
     atattagacg aacaccaacc catcgagcag gcgggatttc gtaaaggcta ttcaacgatc      1560
     gaccacattc atgtagtacg ccaagtaatg gagaagtata aagaacacca atgcacctac      1620
     tatatcgcat ttattgatta tagcaaagca ttcgattctt tgtttcatga aaaggtatgg      1680
     gagtcattaa aagaacaagg aattgaacac aaatacatcc ggttaataaa aaatgtttac      1740
     agccagaata ctgcgagaat acaattagaa aagaaaggtg aacctttcag agtaggcaaa      1800
     ggcgtacgac aaggagatcc cctgtcacca aaaatattct cggcggtact agaatccata      1860
     ttcagagctc taaattggga aaatctcggt atcaatgtag acggtgtctc attgactcac      1920
     ttgagattcg cagatgatat tgtgttattt gcaaaatcgt cggaagacat cacaagaatg      1980
     ataaacgaac tatcaacgga gagcgagaag gtagggttaa aactgaaccc ggaaaaaaca      2040
     aaaataatga caaacggaga gagaattccc ataaacttag gaaacaacca aattgattac      2100
     accgatgaat atatttactt gggacagcta ataacagatg ataatccggt gctcaaagaa      2160
     gttgaacgaa gaataactaa tggctggaga aggtactggg gcttgaaaga aattatgaag      2220
     gacaaaaatc ttcatatgaa cattaaaagc aaactattta atacttgcgt actaccagtt      2280
     ctcatgtacg gcagtcaaac atgggcttta tcacaaaaca cgattagcaa gcttgcatca      2340
     tgccaacgcg caatggagag gagcatgatg aacgtgaaaa agtcagaccg actgagtaac      2400
     cgtataataa gaagcaaaac aaaggtaata gatatagggt gcaaaattag aaggcttaaa      2460
     tggcgttggg cagggcatat ggttagaggt aaagataaat ggagcaaaat tgtgacacga      2520
     tggtatccta gagaaagtaa aaggaaaaaa ggtagaccgc aaaaaagatg ggatgacgac      2580
     ataagacaag tggcaggcgt cacatggaac agagtggctc aagaaagaca tgagtggaaa      2640
     aggttggagg aggcctttgt cgattggcaa acagatctgc agaaaataag aaaaattcaa      2700
     ataataggct agattaaggt ttaaataaaa tttaagtttt atatattata ttta            2754
//
ID   RTE-4_DF    repbase;    DNA;    INV; 3236 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3236
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila ficusphila
RT   genome.";
RL   Repbase Reports 12(6), 993-993 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. The consensus is ~98% identical to
CC   that of RTE-1_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           405..3212
FT                 /product="RTE-4_DF_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRWTGQGCSKRANCEIYYSCHAERREFGCGFVVSRRL
FT                 RHHVSNFTPVSERLATIRVKARFFNLSIICAHAPTEEKDDAVKDAFYARLE
FT                 DTYDRCPDHDVKIILGDFNAKVGRERIFDPTVGQFSLHETTSNNGLRLIDF
FT                 AAARNMVVSSTRFRHLDIHKATWLSPDQKTRNQIDHVVIDGRHASSVMDVR
FT                 TFRGVNIDSDHYLVAAKIRMRLCRAKNIRPITQRKLDVTRLRSQRTAMAYS
FT                 THLSELLHQPIPLPVDAGGLWAHISHSMRAAAETTIGFKRPPTRNQWYDEE
FT                 CRVAAAAKNAAHRKTLQSGATRATCERYREKRKEERRLFRRKKREQEKREC
FT                 EELEVLRDRNDVRKFYQQVNRLTQGFKTGASNCRDENGNLVTDTQCTLRLW
FT                 REHFSKLLAGDDGTNPAIGGSSPIPPIDDNVDIPLPSHDEVRVAITRLKNN
FT                 KAAGADGLPAELFKAGGEELIRCMHQLLCKIWLEESMPNDWNLSVLCPVLK
FT                 KGDPTICANYRGISLITISYKVLSSVICERLKPYTSTLIGPYQCGFRPGKS
FT                 TIDQIFTLRQILEKTHENNIDTHHLFVDYKAAFDSPTRERLYATMSEFGIP
FT                 AKLIRLCRMTLSSTISSVKVGTNLSEPFNTVRGFRQGDPLSCDLFNFVMEG
FT                 VLRKAGVHRSGTIFYKSVQLLAYADDIDIIGRSKRDVTAAFSAIEKESAKV
FT                 GLAVNEGKTKYMLSTSREARRLDSHVVADSYTFEVVKEFTYLGTAINTEND
FT                 VSLEIKRRITLANRCYFGLSKQMCNRDLSRRTKLTLYKTLILPVLLYGAEA
FT                 WVISLTDAAALGVFERKILRKIFGPVRIGDDFRIRMNHELYELYDDVDVVR
FT                 RITIQRLRWLGHVVRMDKESPAQKVFEARVDYGRRRRGRPKLRWKDQVEEN
FT                 LTALGISDWRRRARSRGAWRETLRSAKTRIGL"
XX
SQ   Sequence 3236 BP; 886 A; 828 C; 857 G; 665 T; 0 other;
     gggatgggat ggctttcatt cgtacagagt aaagttttct gatcgcggtc aacttggtgg        60
     ccgccagtgc gatctctgtt ttcgaatgat tgcaagttga cacacagcct cctcgtggca       120
     cctcctgggt agctatctta gcatccgcta gatagtgagc taatgtgtgc agcgatgtca       180
     cccggacgtt aaacggctga gcgcagggtt tggaacccgc ctcgtaaaaa agaagagcct       240
     cggataagat ccccccttat gttgacgacc accgcaaaac gaaaaaggac tacgatttaa       300
     ggatatgcac ctggaatgtc cgaaccctta attgggaagg tgcctctatc caactggcgg       360
     atgccctcga aaaattaaag gctgacatta ccgccatcca ggaaatgaga tggacaggac       420
     aaggttgctc caagcgagca aactgcgaga tctactacag ctgccatgcg gagaggcgcg       480
     aatttggatg cggatttgta gtaagccgga gacttcgcca ccacgtctcc aatttcaccc       540
     cagtgagtga acgactggct acaatccgcg tcaaagctag gtttttcaat ctaagcataa       600
     tttgcgcgca cgccccgacg gaggagaagg acgatgctgt taaggatgca ttctacgcga       660
     gactcgagga cacatacgac cgctgcccag accacgacgt gaagattatc ctcggggact       720
     tcaacgcaaa ggtcgggcgc gaacgcatct ttgaccccac cgtcggtcaa ttcagcctcc       780
     atgagaccac ctcgaacaac ggtctcaggc tgattgactt cgccgcggcg cgaaacatgg       840
     tagtgagtag caccagattt cggcacctcg acatccacaa ggccacatgg ctgtcccctg       900
     atcaaaagac gcgcaaccag attgatcacg ttgtgataga cggaaggcat gcctcaagcg       960
     tgatggacgt gcgtacgttt cgtggagtca acattgactc ggaccactat cttgtcgcag      1020
     ccaagatacg catgcggcta tgccgagcga aaaacatacg ccccatcacg caacgaaagc      1080
     ttgacgtcac taggctgcga tcacaacgga cagcaatggc ctactccact cacctctcgg      1140
     aactgctcca ccaacctatc cctctccctg ttgacgccgg cggactctgg gcgcacattt      1200
     cccactccat gcgagctgct gctgaaacaa ccattgggtt caagcgccca cccacacgga      1260
     accaatggta tgacgaggag tgtcgcgtcg cagctgcagc aaaaaacgcc gcccacagaa      1320
     aaacgctgca gtctggcgca acgcgagcta cgtgtgaacg ttacagggag aaaaggaagg      1380
     aagagaggcg acttttcaga cggaaaaaac gggagcaaga aaagcgagag tgcgaggaac      1440
     ttgaggtgtt acgagacagg aatgatgttc gaaaattcta ccaacaagtc aaccgtctga      1500
     cacaaggttt caagaccgga gcatctaact gtcgggatga aaatggaaat ctggttacgg      1560
     atacgcagtg cacgctgagg ttatggaggg agcatttctc caagctgcta gcaggcgatg      1620
     acggcaccaa tcccgccatt ggaggaagca gcccgatacc accaatcgac gacaatgtgg      1680
     atataccact acctagccat gacgaggtcc gagttgctat aacgcggctc aaaaacaaca      1740
     aagcagccgg tgctgatgga ctgcctgcag agttgtttaa ggccggcggc gaagagctga      1800
     taaggtgcat gcatcagctc ttgtgcaaaa tatggctaga agaaagcatg cccaacgatt      1860
     ggaatctcag cgtcctttgt cctgtactga agaaaggtga cccgacgata tgcgccaact      1920
     accggggaat cagcctgatt accatctcat acaaggtcct atcgagcgta atatgtgaac      1980
     gactgaagcc gtataccagc acactgattg gaccttatca gtgcggcttc agacctggta      2040
     agtccaccat agaccagatc ttcacattac gccaaatcct ggaaaaaacc cacgagaata      2100
     acatcgacac acaccatctc tttgtcgatt ataaagctgc attcgatagc ccgacgaggg      2160
     aacgcctata tgccaccatg tctgagttcg gtattcctgc aaagctaata cggctttgca      2220
     gaatgacatt gagcagcacc atcagctctg tcaaggtagg aacgaacctc tccgaacctt      2280
     ttaataccgt tcgaggtttc agacaaggcg accccctgtc gtgcgatctc ttcaatttcg      2340
     tgatggaagg ggtactgcgg aaagccggtg tacatcgatc tggcactatt ttttataaaa      2400
     gtgtccagct ccttgcgtat gccgatgata ttgacatcat tggccgcagc aagcgtgatg      2460
     tcactgctgc attttcggct atcgaaaaag agtcggcaaa agtgggtttg gcggtaaacg      2520
     agggcaagac gaagtatatg ctgtctacaa gcagggaggc gcggcgccta gactcccatg      2580
     tggtagcgga cagctatacc ttcgaagtgg tcaaggagtt cacgtacctt ggcactgcca      2640
     ttaacaccga aaatgacgtc agcctggaga tcaagcgaag aatcacactt gccaataggt      2700
     gctactttgg tctgagtaag caaatgtgca atagagacct ctctcgccga acaaaactaa      2760
     cactctacaa gacactcatc ctacccgtgc ttttatatgg cgcagaagca tgggtaatat      2820
     cactgacgga tgcagcagcg cttggagtgt tcgagagaaa aattcttcgc aagatctttg      2880
     gtcccgttcg gattggggac gactttcgca ttcggatgaa ccacgagctg tacgagttgt      2940
     acgacgacgt ggacgtggtc cggcgcatca cgatacaacg tctgcgctgg ctcggccacg      3000
     ttgtgcgtat ggataaagaa tctccagctc agaaggtgtt tgaagcgagg gtcgactacg      3060
     ggcgacgacg aaggggacga ccaaagctcc gatggaagga ccaagtggag gagaacctga      3120
     ctgcactggg tatttccgat tggaggaggc gcgcgaggag cagaggcgcc tggagggaga      3180
     cgctgaggtc ggccaaaacc cgaatcgggt tgtagtgcca cctaataata aataaa          3236
//
ID   RTE-4_DPl   repbase;    DNA;    INV; 3282 BP.
XX
AC   .
XX
DT   27-DEC-2011 (Rel. 23.01, Created)
DT   27-DEC-2011 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-3282
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 128-128 (2018).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           308..3235
FT                 /product="RTE-4_DPl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MKIRTRIXCWNVRTLSXDSRLAQAGAEMLRYKLQILG
FT                 LSEVRRNGFGELRMSGGLXFLYSGKEDEEGVXENGVGFLLSDAARKSLLXW
FT                 KPISXRIITARFNSRXRKITVVQCYAPTNLASEEDKDDFYSALNLTIKNIR
FT                 KQDIVIVMGDLNAKVGTENVGCQRHMGTHGLGGRNDNGERFLEFCQDNDLT
FT                 IGGTLFIHGDHHKYTWNSPDGVTKNQIDHLAISAKWRSSLLDVRNRRGADI
FT                 DSDHHLLVAKVRLKVAVARPTNTTTKVGKRFEINKLQDPVVGEAFRVSLRN
FT                 RFSALEADHSSVNAEWNYIKMAYTETSSVVLGYKRHGREDWMSQRTWNLIE
FT                 ERRKSHLQILATIDEAVREDLRVQYRRIRKSIYRSARHDRRVWAENVADCA
FT                 QRAANSGNLREMYKATRILTGKRALKKKPLKDKRGELIATSEGQLQRWREH
FT                 FEEIFQVSNSPITPTTAANLPAVSLDIDESPPTEEEVVKAIQSLKNGKAPG
FT                 YDLITAEMLKADIPTAANALTPLLRNIWSAEELPDDWTKGLLITVPKKGDL
FT                 SECANWRGITLLSTPSKVLCKIILDRLSRAIEPLLRREQAGFRPNRSCTDQ
FT                 IITLRIILEQASEWQREMYLTFVDFEKAFDTLRWTGIWERLREVGVPDKII
FT                 NLIKALYRKYSCKVIHNGLLSEDIPVNAGVRQGCLLSPILFLVVLDGIMQK
FT                 VTKSKRRGIEWGLSSTLEDLDYADDLCLLSHTHADMQAKLDDLRREALEMG
FT                 LKINTRKTQEMRCGATTSLPLLIGTEAIEKIHKYTYLGSIVSESGGAEEDI
FT                 ASRIAKSRAAFAQLRPVWQSRKLTRRVKLKIFRSNVKSVLLYGCETWKVTK
FT                 DISHRLQVFVNWCLRRILGIYWPEKISNVNLWERCGETPIDLQIKRRKWKW
FT                 IGHALRRDPEHIPRQALDWTPEGKRKRGRPKQTWRRTIIAEVKNIGKTWSD
FT                 MKGEAQDRTRWRRTVDALCPI"
XX
SQ   Sequence 3282 BP; 952 A; 828 C; 851 G; 642 T; 9 other;
     agttacccac gtccccgtcg gctctcctgg gaactgctgc aaccgcgcag acgcgtgacc        60
     gctaccatag gatgcagctg agctgagggt acagggcgca aggcgaatat tctgagcctc       120
     aaaacagaac ctactcacca gggaggcaac ccgagacaaa accgagcacg ctcacaggct       180
     ctaaggtggc agccccacca gtgagctagg gtatagtggg cttatcactc gcttacctaa       240
     atccaaaaag attagcgaaa ccaacacagt acaaaaccgg accgaacaaa ctacgaagac       300
     atttggcatg aaaatacgsa cacgaattgs ttgctggaac gtacgaacgc tgagcsagga       360
     tagccgacta gctcaagcag gagcagaaat gctaagatac aagctgcaga tactcggtct       420
     cagcgaagtg cgcagaaacg gattcggaga actgcgaatg tctggaggcc ttamatttct       480
     ttactccggg aaggaagatg aagaaggggt asgtgagaac ggcgttggat tcctcctttc       540
     tgacgccgcg aggaagagcc tcctggwctg gaaacctatc tcagwgcgaa tcatcacagc       600
     tcggtttaac agtaggsccc gcaagataac mgtcgttcag tgttacgcgc ctacaaactt       660
     ggcgtcagag gaggacaagg acgatttcta tagtgcactc aacctgacta taaagaacat       720
     tcgcaaacag gacatagtga tcgtcatggg ggacctgaat gccaaggttg gcacggaaaa       780
     cgtcggctgt caaagacaca tgggcacaca cgggctggga ggccgcaacg ataatggaga       840
     gagattcctg gagttctgcc aggacaacga ccttaccatc ggggggacat tatttataca       900
     tggtgatcac cacaagtaca cttggaattc acccgatgga gtcaccaaga atcaaatcga       960
     ccaccttgct atcagcgcca aatggcgctc atcactgctt gatgtccgca accgtcgtgg      1020
     cgcggatatc gatagcgatc accaccttct agttgccaag gtacgactca aagtagctgt      1080
     agctcggccc acaaacacca ctaccaaggt tgggaaacga tttgagatca acaaactaca      1140
     ggacccagtc gtaggtgagg cctttagggt atcactacga aatcgcttct ccgcccttga      1200
     agcggaccat tcatctgtca acgcggagtg gaactacatc aaaatggcct acacagagac      1260
     cagctccgtc gttcttggtt acaaacgcca tggacgcgag gactggatgt cacagagaac      1320
     ttggaatctc attgaggaga ggcgcaagtc tcaccttcaa attctggcaa ccatcgatga      1380
     ggcagtgcgc gaagacctga gggtgcaata taggcgcata cgcaaatcca tataccgcag      1440
     tgctcgccac gatcggcgag tgtgggcgga aaatgtggcg gattgcgccc aacgcgctgc      1500
     caactccggt aatctcagag agatgtacaa ggcgacgagg atcttgaccg gaaaacgggc      1560
     cttgaagaag aagcccctga aggacaaaag gggtgaactg attgctacat cggagggaca      1620
     gctccaacgg tggcgtgaac attttgagga aattttccaa gtctcaaata gccccataac      1680
     accaaccaca gctgccaacc tgcccgctgt aagcctcgat atcgacgagt ctccccccac      1740
     tgaagaggaa gtagtgaaag ccatccagtc gcttaagaac ggtaaagctc ctggatacga      1800
     cctcatcacg gcggaaatgc taaaagcaga tatacctacc gctgcgaacg cgctaacacc      1860
     tcttctgcgg aacatttggt cagccgagga gttaccggat gactggacta aagggcttct      1920
     catcaccgtg cctaagaagg gagatctcag tgaatgcgcc aactggagag gcattacctt      1980
     gctttctact ccgtctaaag tgctgtgcaa gattatccta gacagactat cgagggccat      2040
     tgaacctctc cttcgcagag aacaggctgg attccgaccc aacagatcgt gcaccgacca      2100
     gattattacc ttacgcataa tcctcgaaca agcatcagaa tggcagaggg aaatgtattt      2160
     gacctttgtg gatttcgaaa aagctttcga cacgctgaga tggacaggta tctgggaacg      2220
     tttacgtgaa gttggagtcc ccgacaaaat aatcaacctg ataaaagccc tctacaggaa      2280
     atattcctgt aaagtaattc acaacggtct tttgtcggag gacataccag tcaatgcagg      2340
     tgttcgccag gggtgtctcc tttctcctat tctcttcctt gtcgttctgg atggtatcat      2400
     gcagaaagtg acgaaaagca agcgccgcgg catagaatgg ggactgtcca gcactttgga      2460
     agatttggac tatgccgatg acctatgcct gctgagccat acacacgccg acatgcaagc      2520
     caaactggac gacctacgac gagaagcatt agagatgggg ctaaaaataa acacgcgaaa      2580
     gacccaggag atgaggtgcg gagcaacaac ctctctgccg ttgctcattg gcacagaggc      2640
     tatagaaaaa atccacaaat acacctacct aggaagcata gtatcggaga gtggaggtgc      2700
     cgaagaggac atcgcttcga gaatcgccaa atcaagagca gccttcgcgc aactccgtcc      2760
     tgtatggcag tcgcggaaac tgaccaggag agttaaactc aaaatattcc ggtccaacgt      2820
     caaatccgtg ctgttatacg gatgtgagac gtggaaggtt actaaggaca tctcgcatcg      2880
     gcttcaggtc ttcgtcaatt ggtgtcttcg ccgtattctc ggtatttact ggcccgagaa      2940
     aatttccaac gttaatctct gggaacgctg cggtgagaca ccgattgacc tgcaaatcaa      3000
     acgtcgcaag tggaagtgga tcggccacgc gctccgaagg gatccggaac acataccgag      3060
     acaagcccta gactggaccc ctgaaggaaa gcgaaaacgt ggccgcccta agcagacctg      3120
     gcggcggacg atcattgcag aggtcaaaaa catcggcaag acttggagcg acatgaaagg      3180
     cgaagctcaa gaccgaacga gatggcggcg tactgtggac gccctctgcc ccatctaggg      3240
     gacataggac caagaagaga gtgtaagaat aaaatgtaaa aa                         3282
//
ID   RTE-4_Hmel  repbase;    DNA;    INV; 4412 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4412
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1326..4250
FT                 /product="RTE-4_Hmel_1p"
FT                 /translation="QSKSXPLLTPNLPVRPVTAGEYDQNPPRENTKTNNTF
FT                 FICSLNVRSLSSDLKFIELKAALRVINHDIIGLCEVRRLGEKIIEYNEYIF
FT                 YYIGQTKGLHGVGFLVKRKYKDNIIMFTGISERVCILEIKLGIQSFAIIQA
FT                 YAPTENSSQEEIDSFYEDLAKAHDSISTEYIFSMGDFNAQIGIPKKYEHST
FT                 TGEFGYGTRSARGTRLIQYAQEYNLKIINTMFKLKPKNRWTWISPDRNTRN
FT                 EIDYIMSTKYHMISKYEVLQSFSFGSDHRLIRATLHINSIKKSRRNYSNTY
FT                 KKLKTPAEQEMYLTNLNTFIPELIETQHSYNVEEYYQQINYYVKLSLKXIK
FT                 STQKNKILSVKALDYMKERSILQNKPNLNKSDKQKLKTLYKLTDKEIKRCY
FT                 AAYRATTIQRHLDNSRSAKKAYKELNQSKTWVPSLQNGHKKCKSRTEIINA
FT                 ATXYYTNLYRQPDTPXQNVATYXCTDTSPIQQFTEKEILTQLMRLKPEKSP
FT                 GPDGVTNECIKVAKSLLLTPITILWNKILDEEAVPHHWVESEIILLYKKGD
FT                 PADIGNYRPISLMSCFYKLFASCLLERIAXVIDAHQPIEQAGFRSGFSTID
FT                 HIQVVDQVIEKYLEFNKPLYIAFIDYKKAFDSISHESIWESLKALKIKEKY
FT                 INILKYIYNNTTSRVRLDRVGEAINIKRGVRQGDPISPKLFIAVLQLVMGK
FT                 LQWLNQGINMNGHFLSHLRFADDIILFSETPCQLNKMVNDLNQASMKVGLD
FT                 MNLEKTKVMTNRSETPILVNXTXLEFVKNYVYLGKQMSLSKERNSQEINRR
FT                 VAITWNKFWNHKEILKSQLPLSTKKIVMDTAILPCLTYGCQTWTYDLKTRN
FT                 KIQTTQRRMERSCLGLKLKDKVKNVDIRKKTKVCDALTFSLKAKWKWAGHL
FT                 ARYQDDRWTLRSVRWSGPRGSRARGRPKTRWVDEIVAMAGGSWLDTAKDRE
FT                 SWHSLGEAFTRKGSIQLTNN"
XX
SQ   Sequence 4412 BP; 1746 A; 785 C; 737 G; 1057 T; 87 other;
     gagagggcgc cgctgtgtca ctgtbaacat cgtactccgt aataattaag ttttaaaaat        60
     atttaagttc gccaaagtaa agtgaaacat acacaacata gaatcagtgc ttgtactact       120
     tcgatcaaca taaaaagtgt agtgtataaa ccacaaaatt tactaaaaag tgcactaaaa       180
     actttttgct aaaagaccgt tabgycgtta agaaattcaa gatataagat taattatagt       240
     gaaaaatagt agtgtaatgt gtgtgtgatg aaactgaaac tcgaaaaaca ttaaaaaagt       300
     gtaaaataaa aacgtttvaa gttayattcc gaaaagtgcc aaataattat attttcgatt       360
     baaaactcct cgrcctaart attgarcagc gccatctatt gtaacchatt agaacttctt       420
     agtcagatct targtcgatc cgygttcaga aacaagacaa ctyaatcgac tatatagcaa       480
     aactcttctt attgtaaata gagggcgcta agagcttcat aarccvagaa tggaggaaat       540
     aaaaaatatg ttaattaaca tgcagcaaga tataaagcaa caaaaacagg mcatgctaga       600
     datgaaagaa gatataaaaa gtacaataat cagcagcctt aacgagaagt ttaataattt       660
     ggaactcaaa aacgagctct tggagaaaaa aattgaggat caaacaaata aaattaacaa       720
     tttagaaagg cagctccgac gcaaaaatct agtcttgttt ggcgtagaag aaagtgaaaa       780
     atcatacgat gaactrgaaa aaatwgtaat aaatataata aatryayaca taaaaatwtc       840
     atgtgacact agcaayattg aagctgttag aagattaggg aaaaaaggyg adaaagtwag       900
     accartagtg ataactttca acacattggg cttcaaacta aaaatacaaa aaaataaacg       960
     attcttacaa aatacatcat actacctraa agavgaytat ccatttgaaa ttttaatgaa      1020
     acgtaaagaa ctacaaatcc aattacagaa agaaarrgad gcaggcaaca ccgcttttat      1080
     aaaabatgac aaavttatta taatgaataa charhaachc chawahaarc agtcaaacaa      1140
     aagraacttg tctgaatchc cggagaaadt tcatcttggt rgccaaaaca ttcaacagat      1200
     tagcaaacaa cctadgaaaa mtaraggaga yatgaagaat tatataatac aahagcccaa      1260
     gctaaycytc gccccgtmag aaacahttcm wtgtcaaaca tatatctcar hayaaaacag      1320
     catagcaatc aaaatcgrac cctctactaa cccctaatct cccagtacgg ccggtcaccg      1380
     cgggagagta cgaccaaaac cccccaagag aaaataccaa aacgaataat actttcttta      1440
     tttgcagcct taacgtaaga tcattatcct ctgatctaaa atttattgag ctcaaagcag      1500
     cactacgagt tattaaccat gacataatag gtttgtgtga agttcgtcgc ctaggtgaaa      1560
     agataataga atacaacgaa tacatcttct actacatagg ccaaacgaaa ggcctacatg      1620
     gagtaggttt tctggttaag agaaagtaca aagataacat cataatgttt acaggaatat      1680
     ctgaaagagt atgtatacta gaaatcaagc tgggaatcca aagttttgca attatccaag      1740
     cgtacgcacc tactgaaaac tcatctcagg aagaaataga tagtttttac gaggacctag      1800
     cgaaggctca cgattccata tcgacagagt atatattctc tatgggtgat tttaacgcac      1860
     aaataggaat ccccaaaaag tacgaacatt ccactacagg cgagtttggc tatggcacta      1920
     gaagcgctcg gggtacgaga ctaattcaat atgcccaaga atacaaccta aaaataataa      1980
     atacaatgtt caaactaaaa cctaagaacc gctggacatg gatctctcca gacagaaata      2040
     caagaaacga aattgattat attatgtcca cgaagtacca catgatctct aaatatgaag      2100
     tattacaatc tttctcgttt ggatcggacc acagactaat tagagcaaca ttacacataa      2160
     actctattaa gaaaagtaga cgtaattatt ctaatacata caagaagcta aaaacaccag      2220
     ctgagcagga aatgtacctt acaaacctta atacatttat accagaactt atagagactc      2280
     aacatagcta taatgtggag gagtactacc agcaaatcaa ttattatgtc aaattaagcc      2340
     ttaaahacat taaaagcaca caaaagaaca aaatcctatc tgtgaaagcg ctagattaca      2400
     tgaaagaaag aagtatacta caaaataagc ctaatttaaa taaaagtgat aaacaaaaat      2460
     taaaaactct atataaactt actgacaaag aaataaaaag atgctacgct gcttacagag      2520
     caacaactat acaacgacac ctcgataatt ccaggtcggc taaaaaagct tataaggaat      2580
     taaaccaatc caaaacwtgg gtcccttctc tccagaatgg tcataaaaaa tgtaagtctc      2640
     gcacagaaat tataaacgct gctaccgwtt actacactaa cctatataga caaccagaya      2700
     caccgaygca aaacgtggct acttacdgtt gtacagacac ctctccaata cagcagttta      2760
     cagaaaaaga aatcctgacv caactaatga gacttaaacc ggagaaaagc ccaggaccag      2820
     acggggttac aaacgaatgc atcaaggtcg caaagtcttt rctattgaca ccaatcacta      2880
     tcctgtggaa taaaatactt gatgaagaag ctgtgccgca ccattgggtr gaatctgaaa      2940
     ttattctact atayaaaaaa ggtgacccag ctgacatagg caattaccgt cccataagcc      3000
     tcatgtcttg tttttacaaa ttatttgcct cctgtctyct tgaaagaata gcchcagtca      3060
     tcgatgcaca ccaacctatc garcaagctg gattyagaag tggtttcagc acgattgatc      3120
     atatccaagt ggtagaccag gtgatagaaa aatatttaga atttaacaaa ccattataca      3180
     tagctttcat agactacaaa aaagctttcg actcaatttc acacgaaagc atctgggagt      3240
     cgctgaaagc acttaaaata aaagaaaaat atattaatat tctaaaatac atttacaata      3300
     acaccacaag tagagttaga ctagatagag tgggagaagc aattaacata aagagaggag      3360
     tccggcaagg agatccaatt tccccaaaac tgtttatagc agttttgcaa ctcgtaatgg      3420
     gaaaattaca atggcttaat caaggcatta atatgaacgg gcacttctta agtcatctta      3480
     gatttgctga cgacataatt ttattctcag aaaccccttg tcaattaaat aaaatggtta      3540
     acgacttaaa ccaggccagc atgaaagttg gattagacat gaacctggaa aaaaccaaag      3600
     ttatgacgaa ccgcagtgaa acccccatct tagtaaatas tactyctctc gagtttgtaa      3660
     aaaactatgt atacctaggt aaacagatgt ctttgagtaa agaaagaaac agtcaagaaa      3720
     taaaccgacg agtagcaatt acctggaata agttctggaa ccataaggaa atactcaaat      3780
     ctcaacttcc tctgtcgacc aagaaaatag tgatggatac agcaatatta ccatgcctca      3840
     cctatgggtg tcaaacttgg acctatgatc tcaaaaccag gaataaaatt cagactaccc      3900
     agagaagaat ggagagaagt tgcctaggtt taaaattaaa agacaaagtt aaaaacgttg      3960
     acatccgaaa aaagacaaaa gtatgcgatg ccttgacttt ttcgctgaag gcaaaatgga      4020
     agtgggcggg ccacttagct cgataccaag atgacagatg gaccctaagg tcagtaaggt      4080
     ggtcagggcc aagaggytcc agagcaagag gtcgaccaaa aaccagatgg gtagacgaaa      4140
     tagtagcgat ggcgggygga agttggctgg acacagctaa ggatagagag tcgtggcatt      4200
     ccttggggga ggcttttacc cgaaaggggt ccatacaatt aacaaacaat taaaataatt      4260
     aataatttaa aatgacatga aatataacaa tctataaatt aaatadtaac aaaacttatt      4320
     aaatbtaaat atatatcaat gattaawdwt ttttataawt ataaatgtat cactgtatgg      4380
     aattgaaata aagcttatta ttattattat ta                                    4412
//
ID   RTE-4_LMi   repbase;    DNA;    INV; 3345 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3345
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3465-3465 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(321..458,407..2551,2515..3054)
FT                 /product="RTE-4_LMi_1p"
FT                 /translation="MWKATGNHHIKDLRISQASAVNHASIFCKIFRRWISG
FT                 WGLQKIQTRNFPEMDLRVGTAKDTDKVKEKNPNFNIATWNVRTLLQCSKLE
FT                 NLKLEMERLEIDILGISEMRWPQPGDFWSEEYRVIHTGTDQDRPGMGGVGI
FT                 ILRKNYGSRVKGYVQYSSRIILVKLETKPKDTVIIQVYMPTSKEEDAIVDE
FT                 IYEEISNAMRNVKGDENLIVMGDWNAIVGEEPEGEIVGKYGLGKRNERGDR
FT                 LIEFCSRHQLVVTNTLFQHHKRRRYTWKAPGDIARHQIDYILVKSRFRNQV
FT                 KDSKSYPSADIGSDHNLVMMKSSLRFKCLKKKTVKLKWELEKLKTEGLAKH
FT                 YAHETDNLAINFQHGGVNEVWDQIKSDIYKAAEKTVGKTKPKNKRKWITTD
FT                 VIELIENRRLYKNATDEQGKAEYRRLRNLVNREARKAKENFLEEMCREVEE
FT                 NMQNGRTDLAYRTANKFFSKRKTTLSGTIENKEGKILFGEDIVKRWKEYIE
FT                 ELYAGTPISEEVIGREEQVDEDDKGDDILQEEFDKALKDLRDNKATGIDDI
FT                 PAELIKNAGDSVKKMLLELIRTIYNTGELPTDFQKCIIVPIPKKAAATKCE
FT                 QYRTLSLISHASKILIKIILRRIEKKVEDMLSEDQFGFRRGLGTREAILAL
FT                 RLLIEKRLQKNKPTYIAFVDLEKAFDNVIWQEMFRVLRKSGMKYKDIRVIL
FT                 SLYKDEVAVIRNCHQDQEANIRKGVRQGCALSPLIFNAYIQEAIDQVRETT
FT                 EVGSRLMGRGNYRGGIKINGQRIDMLRYADDIAIVTETKEDLEEVLRTMER
FT                 IFYNQYGMRINKKKTKVMVCSTEAEYEPPRIRIGREELEVIEEFTYLGSKI
FT                 TRDGRSRKEIVSRIQQAKIAFNLRKNLLTSKNISMEIRKRIMKAFVWSVAL
FT                 YGCETWTMGREEKTARGPGDVVLQKDDEDQLERESDK"
XX
SQ   Sequence 3345 BP; 1255 A; 576 C; 813 G; 700 T; 1 other;
     ccccagggac tcacacctag tgagtacgtg gctggcgacc acggggtcct gagctgagtc        60
     ctggcactgc ttccacttac ttatgccagg cttctcactt ttatctggcc atccttggcc       120
     acctcttgtt ctttccgamc ctgatgctat taggtttcga gggctagggg tctttcattt       180
     tccaacctat acttctcatg accgaaaaat gaccgggata agtcatcaac ccagcatttg       240
     ctgggcaggc accctcttgt cctggaaatg agaaaccatt tccgaaggcg gaagaaccag       300
     ctgatggtca acggcatagg atgtggaagg caacgggaaa ccaccacatt aaagatctac       360
     ggatatccca agcatcagca gtaaaccatg ccagtatctt ctgtaaaatt ttccggagat       420
     ggatctccgg gtggggactg caaaagatac agacaaggtg aaggaaaaga atcccaattt       480
     caacatagca acttggaatg taagaacact gctgcagtgc agcaaactag aaaatctaaa       540
     acttgaaatg gaacgactgg aaatcgatat tctaggtata tcagagatga gatggcccca       600
     accaggtgat ttttggtctg aagaatatag agtcatccac accgggactg accaagatag       660
     accaggaatg ggaggagttg gaataattct gaggaaaaac tatggctcac gtgtcaaggg       720
     atatgtgcag tacagctccc gaataatact agtcaaactt gaaactaaac caaaggacac       780
     tgtgattata caagtgtaca tgccaacatc caaagaagaa gatgcaattg ttgacgaaat       840
     atatgaagaa ataagtaatg caatgagaaa tgttaaggga gatgaaaacc tgattgtcat       900
     gggggactgg aatgcgattg tgggtgaaga accggaggga gaaattgttg gcaaatatgg       960
     acttggaaag agaaatgaaa gaggtgaccg actaattgag ttctgctcgc ggcaccaatt      1020
     agttgttaca aacacacttt tccaacacca caaacgaaga agatacacat ggaaggcccc      1080
     tggagacata gcgagacacc agattgacta catcctagtg aaatcacgtt ttaggaacca      1140
     ggtaaaagac agcaagagct atccatctgc agacataggc agtgaccata acctggtcat      1200
     gatgaaaagt tcactcagat tcaaatgtct aaagaagaag acagtaaaat taaaatggga      1260
     attagaaaaa ctaaaaaccg agggactggc aaaacactac gctcatgaaa cagataactt      1320
     agctataaat tttcaacatg gtggagtaaa tgaagtttgg gatcaaatta aatctgatat      1380
     atacaaagca gcagaaaaga cagttggaaa aactaaaccc aaaaacaaga ggaaatggat      1440
     tacaacagat gttattgagc taatagaaaa caggagattg tacaaaaacg caactgatga      1500
     acaaggaaaa gctgaatata gaagactaag gaatctagtc aacagagaag ctagaaaagc      1560
     aaaagaaaac tttctcgaag aaatgtgcag ggaagtggaa gaaaatatgc aaaacggaag      1620
     aactgattta gcctacagaa cagcaaataa attttttagc aaacgtaaaa cgacactctc      1680
     aggtacaata gaaaataaag agggaaaaat tctgtttggt gaagatattg tgaagagatg      1740
     gaaagaatac attgaggagc tgtatgctgg aacacctatt tcagaggaag taataggaag      1800
     agaagagcaa gtagatgaag atgacaaggg agatgatatt ctgcaagaag aatttgacaa      1860
     agctctaaaa gacctacgag acaacaaagc gacgggcatt gatgacatcc ctgcagaact      1920
     aataaagaat gctggtgaca gcgtgaaaaa aatgctgctt gaacttatta ggaccatcta      1980
     taacacagga gaattaccga cagacttcca gaaatgcatc attgttccta taccaaagaa      2040
     ggcagcagct acaaaatgtg aacagtaccg aactttaagc ctaatatcac atgcatcaaa      2100
     aattctcata aaaataattc tgagaagaat tgaaaagaag gtggaggata tgctgagtga      2160
     agatcagttt ggattcagaa ggggattggg aacaagagaa gcgattctgg cactgagact      2220
     ccttatcgaa aagcgattac agaaaaataa accaacttat attgcctttg tagacctgga      2280
     aaaggcattt gataatgtta tctggcaaga gatgttcaga gtgctgagga aaagtggaat      2340
     gaaatacaaa gacatccgtg tgatactcag tctctataag gatgaggtgg cagtgattag      2400
     gaactgtcac caggatcaag aagcaaatat cagaaaaggg gtaagacaag gatgtgctct      2460
     ctctcctctt atattcaacg cctacatcca ggaagctata gaccaagttc gtgaaactac      2520
     agaggtggga tcaagattaa tgggcagagg atagacatgc tacgctatgc agacgatatt      2580
     gctatagtca cggagacaaa agaagaccta gaagaagtcc tcagaacaat ggaaaggatt      2640
     ttctacaacc agtatggtat gagaataaac aagaaaaaga ctaaagtgat ggtatgcagt      2700
     acagaagcag aatatgaacc tccaagaata agaattggaa gagaggagct ggaagtgata      2760
     gaggaattta cttacttggg aagcaagatc acaagggatg gtagaagccg gaaagaaatt      2820
     gtgagcagaa tacaacaggc caaaattgca ttcaatctga ggaagaactt actcaccagc      2880
     aagaacatca gtatggagat aaggaaacgt ataatgaaag cttttgtttg gagtgtggct      2940
     ctatacggtt gcgaaacttg gacaatggga agagaggaga agacggctag aggccctgga      3000
     gatgtggtgt tacagaagga tgatgaagat cagctggaaa gagagagtga caaatgaaga      3060
     ggtgcttaga agagtacagg aaaacagatc cctgtggagg cacatccaaa caagacgaga      3120
     caaacttata gggcacatcc taagacacaa taacatcatt ggaacaatag cagaaggagc      3180
     tattgaggga agaaaccgac gggggcgacc aagaatatca tacatgcaac agatcatgaa      3240
     tgatgttgga tgtaacacgt atgtggaaat gaagaggaag gcagacagaa gagaggaatg      3300
     gcgctctgct gcaaaccaac ctcagggttg aacactgaag aagaa                      3345
//
ID   RTE-4_PPo   repbase;    DNA;    INV; 3095 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3095
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3155-3155 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(100..2250,2190..2672,2679..3077)
FT                 /product="RTE-4_PPo_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMATRKVRPPVPGGPAVPGYGSGQGNGGAGGAKNPRL
FT                 GYGYHTRRPLALATLNTRTLRTDERIAELEEELSRLRWDIIGLSEVRREGE
FT                 ETIILKSGNLFFFREGDQQSQGGVGFIVHKSLVNNVVKIESVSTRVAYLIL
FT                 RISKRYSLKVIQVYAPTSTHSDDEVETMYEDISRAMHSSKTFYTVVMGDFN
FT                 AKLGIRDGDELRMGKFGYGRRNHRGHLLAGFMEKEGLYMMNSFFKKQGHRK
FT                 WTWMSPDGATKNEIDFIMSTKKQIFNDVSVINAVKTGSDHRIVRGTLNIDV
FT                 KLERCRLMGSTLRPAPVHIHNAETFQLELRNQFECLGSSVDDLNDGFVHAL
FT                 QSVGSKFYKTHRKSSPKKLSDHTLELMKERRDMKLHSSDDAERYRRLNRQI
FT                 STSIKRDIRRFNTNRVKLAIERNQGSKVFSRDLSIGQSQLLKLKTGEGRVV
FT                 SSRPELLSEVERFYGQLYATQEPVTDLVEDPRARLTRHYTEDIPDVSLDEI
FT                 SMALKQLKNNKAPGNDGITAELLRAAGEPALKVLQKLFNSVILEGHTPKAW
FT                 SRSVVVLFFKKGDKALLKNYRPISLLSHVYKLFSRVITNRLARRFDDFQPP
FT                 EQAGFRKGFSTVDHIHTLRQVIQKTEEYNLPLCLAFVDYEKAFDSVETWAV
FT                 LQSLQRCRIDYRYIEALRCLYENATMSVRVQSEDTKPIHLQRGVRQGDVIS
FT                 PKLFTAALEDVFKVXKYCHLPETLHRGVGRRFQGPEILVVTYTFLHVTFRV
FT                 QVIGSLLLLRILIKIGTMLEDLNRASERVGLRMNMDKTKVMSNVHVSPTPI
FT                 TIGGHTLEVVDEYVYLGQTIQLGRSNFEREVNRRIRLGWAIAKXNNRRSGS
FT                 CGISSRPKTYRSVSRQKSLTSVCCQHTGQRRGHSLRATSGGSKSLKGQWSG
FT                 QCSESLCEIASGTMRSAAESVTDIARRIANLKWRWAGHIARRTDGRWGRRV
FT                 LEWRPRIGRRSVGRPPARWTDDLVKVAGVHWMRAAQDRALWQSMGEAYVQQ
FT                 WTTYG"
XX
SQ   Sequence 3095 BP; 828 A; 765 C; 863 G; 637 T; 2 other;
     accggaggac gggcagcagc gtccctttca aaaacggtgg agaagtctgc gatcgccaac        60
     ccgcctgcca agcgtggcga ttatggcaaa tccccccaaa tgatggccac tagaaaagta       120
     cggcccccag tacccggcgg ccccgccgtt cctggttacg gtagcggcca gggtaacggc       180
     ggggcagggg gtgctaagaa tccccggtta ggatacggct accacacacg acgacctttg       240
     gccctggcaa cactgaacac gcgcacactg cggacggacg agaggatcgc ggagctggaa       300
     gaagaattga gcaggttgcg ttgggacatt atagggttat ccgaagtccg aagagagggg       360
     gaggaaacga taatcctcaa gtccggcaac ttgttcttct tccgggaggg cgaccaacag       420
     tcgcagggtg gtgtcgggtt tatcgtccac aagtccctcg tgaacaatgt ggtgaagatc       480
     gagagtgtgt cgacgagggt tgcgtacctg atactcagaa tatccaaacg gtattcgctg       540
     aaggttatac aggtctacgc accgacctcg acacactccg acgatgaggt ggaaactatg       600
     tatgaggata tctcacgagc catgcatagt tccaaaacct tctacaccgt tgtcatgggg       660
     gacttcaacg cgaaactggg cattcgggac ggagacgagc tacgaatggg aaagtttgga       720
     tatggacggc ggaaccaccg gggacactta ctggccggct ttatggagaa ggaaggactt       780
     tacatgatga actccttctt caagaagcaa gggcacagga agtggacctg gatgagtccg       840
     gacggtgcta ccaaaaatga gattgacttc atcatgtcga caaagaagca aatattcaat       900
     gatgtctcag tgatcaacgc ggttaaaacc gggagcgatc accgaattgt ccgaggcaca       960
     ttgaatatcg acgtcaagct cgaacgatgt cgactgatgg ggtctacact ccggccagcg      1020
     cccgtgcata tccacaatgc cgaaaccttt cagctcgaac tccgaaacca gtttgaatgc      1080
     ctgggaagta gcgtggacga tctgaatgac gggttcgtgc atgctttgca gtcggtgggt      1140
     tctaagttct acaagactca ccgtaaaagc tcgcccaaga aactctcaga ccacactctc      1200
     gaactcatga aggaaaggcg agacatgaaa ctgcactctt cagatgatgc tgaacggtat      1260
     cgacggctaa atagacagat ctccacgagc ataaagcgcg acatacgccg atttaatacc      1320
     aatcgggtta aattggctat cgagcgaaat cagggctcca aagtgttttc gcgggatctg      1380
     tctattgggc aaagtcaact gttgaagctg aagactggag agggtagagt tgtgtcctcc      1440
     agacctgaac tcttgagtga ggttgagagg ttctatgggc agctctacgc aacgcaggaa      1500
     cctgtcacag atctggtcga agatcccaga gccagattaa cccgacatta caccgaggac      1560
     atcccggacg tcagtctcga cgagattagt atggccctga aacaacttaa gaacaacaag      1620
     gcgccgggga atgacggaat caccgcagag ctattgaggg cagctggaga gccggcactg      1680
     aaggttcttc agaagctctt taattccgtc attctcgagg gacatacgcc aaaggcatgg      1740
     agcagaagtg tggtggtact gttcttcaaa aagggcgata aagccctcct gaagaactac      1800
     aggcccatct cacttctgag ccatgtctac aagttgttct caagggtcat cacgaaccgt      1860
     ctcgctcgca gattcgacga cttccagcct cccgaacaag ccggtttccg taaaggcttc      1920
     agtaccgtag accacataca tacgctgcgg caggtaatac agaagaccga ggagtataac      1980
     ctgccactat gcttagcgtt tgtggactac gagaaagcct tcgattcggt cgagacctgg      2040
     gcggtactgc agtcactcca gaggtgccga attgactacc ggtacatcga agcgctaagg      2100
     tgcttgtacg aaaacgccac catgtcagtc cgagtacaga gtgaggacac aaaaccaatc      2160
     catctgcagc gcggtgtaag acagggtgat gtcatctccc cgaaactctt caccgcggcg      2220
     ttggaagacg ttttcaaggt ccngaaatat tagtagttac ctatacattt ttacacgtaa      2280
     ctttccgcgt tcaagtaatt ggttctttgt tacttctacg tattctcatc aaaatcggta      2340
     caatgctcga agacctcaat agagcctccg aacgagtggg tctgaggatg aacatggaca      2400
     agacgaaagt catgtctaat gttcatgttt cacccactcc cataaccatc ggaggccata      2460
     ctctcgaagt tgttgacgag tatgtctacc tgggacaaac catccagcta ggtaggtcca      2520
     acttcgagag ggaggtcaat cgccgaatcc gactcggatg ggcaattgcc aaggwtaata      2580
     ataggcgttc gggaagttgc gggatatcct ctcgtcccaa gacataccgc agtgtctcaa      2640
     gacaaaagtc tttgaccagt gtgtgttgcc agtgatgaca tacgggacag agacgtggcc      2700
     actcactgcg ggcaacatca ggcggctcaa agtcactcaa agggcaatgg agcgggcaat      2760
     gctcggagtc tctctgcgag atcgcgtcag gaacgatgcg atccgcagca gaatcagtaa      2820
     ccgacattgc ccgaagaatt gcaaacctta agtggcgatg ggctggccat attgcccgca      2880
     gaacggacgg ccgatggggc cgaagagtcc tggagtggcg gccacggata ggtcgtcgca      2940
     gcgtaggtag gcctcccgca agatggaccg atgacctggt caaggttgcg ggagtgcact      3000
     ggatgcgggc ggcacaggac cgggcattgt ggcaatcaat gggggaggcc tacgttcagc      3060
     agtggacgac ctatggctga caatgatgat gatga                                 3095
//
ID   RTE-4_PXu   repbase;    DNA;    INV; 375 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-375
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3084-3084 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 375 BP; 119 A; 76 C; 119 G; 61 T; 0 other;
     aaaatcctta ggcgtatttt tggtgccgtg tgcgaagaca accaatggcg aagccggtac        60
     aaccaagagc tctatgactt gtaccaggag ctgcacgtgg cgggacacat caaattgaac       120
     aggcttagat gggccggcca cgtggagcgg atggatgaag ccagagtccc taagagtgtt       180
     atggcgagta atcccgaagg tcgtcgaagt cgagggagac caaagctccg atggatagac       240
     ggcgttaata aggacgcaaa aaaagtgggc atagcaaact ggaagtccgt ggccagagat       300
     agaccgaggt ggaaaaagtt gctggaccaa gccaaggccc acaaagggct gtagagctag       360
     aagaagaaga agaag                                                        375
//
ID   RTE-50_LMi  repbase;    DNA;    INV; 3142 BP.
XX
AC   .
XX
DT   13-JUN-2014 (Rel. 20.01, Created)
DT   13-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-50_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3142
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 296-296 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(474..749,707..1273,1296..2075,1921..2403,
FT                 2361..2882)
FT                 /product="RTE-50_LMi_1p"
FT                 /translation="MLDKNKRKVLQHNGFIPCTSEDKDDSEIDSFYEDLES
FT                 VQEDAPSYDVKVFLGDANAKVGREDIARPYAGLHSLHDSSDNNGMRLVNLA
FT                 VQKTQQWNEIGQPGSSKNLRIMSTYFPHKDIYKITWKSPDQETQNQIDHIL
FT                 VDARHRSAIQNVKSQRGAEIGSDHYLVLTTIQARIESRNIRRRGADQKINA
FT                 DLLKEDHIKDRYALEIRNRFADIEEEDEDNIEKLWSKLKIGVKDAAAEVLK
FT                 PLERRRKNRGWFNDRCRDAVTKRKAAKLLWLTNEHDKEQGRSKKSPANRKA
FT                 RVHKQQDKTGRRRLDSRQSRDFYRTVRFFKKGYNPRIDMIKGQEGQIITDE
FT                 MKAMEEWKNYFENLLNVDANTNSAATEEEDKESNRENREAVPSGEYELPSM
FT                 EEVRATIKMLKRGKAPGIDGIPAEMLKEGRATLQERLYHLICLIWKKERIP
FT                 EEWKQSVICPILKKGDPMRCSNYRGITLLCTAYKVLSMLLLKRLTPHVEKV
FT                 LGFQQAGFQKGKVNCRPSTYNKASAIKELGIPQKCSLPFCRLQSIHHMSRK
FT                 FWDSNKQAFRKGKSTVDHLHTIRQVLSKSWEFRKNVHCLFVDFKAYDSLNR
FT                 QAIWQELERAQVPRKLIKLTQVCTQETTCMVKVNGNMSEKFKVRTGVRQGD
FT                 CLSPLLFNLVLERALRTVASLETGTELGRRINTLAYADDVVLIAERESKTW
FT                 FRCCSNSREREQDLVQMTRALIEEAMRTGLKLNMDKTKYLVVSRENDDRPL
FT                 NVDDKVFERVKDFKYLGAILNERNEIDQEITARIQAGNRSRFALGKLLKSR
FT                 LLSRSSKTNTTIIQPVVLYGAETWTITRKMERKLLTFENAILRQIFGPVKD
FT                 GDEWRKRKNRELQELFKSWTSWQ"
XX
SQ   Sequence 3142 BP; 1158 A; 558 C; 813 G; 611 T; 2 other;
     cagcagtggt ggggcttgcg tgatcaagtg tccgagagct aggctggcgg tagcgttgct        60
     actggaagac aggtcaaatg tgatgattag actaaatggg acaccatgat cctccaggtt       120
     gggggttgcg cgtgggggct aacaacccct caccgcaaat aagctaatta ttacgaaaca       180
     cgaaaaatag cctcgattcg gtacggaaca gtggaaacaa ccccagcagt caaaataatg       240
     caggaaatca ttgaagaaac agagtgaatg tgactggaat gtaaaaacat tgtactcact       300
     tggaacasaa agtgcttgaa taagtgaaca gatacagtta gacatagtgg tgctgcaaga       360
     aatgagatgg ccgagaggga tgcgtgaaga aaagtggtaa gtggagtggg ctttgcagta       420
     gccaatagag taaggggaaa tatcatggac ttcaagactg ttaatgaaag aatatgctgg       480
     ataagaataa aaggaaagtt ttacaacata atggtttcat tccatgcacc tcagaagata       540
     aagacgacag tgaaatagac agtttctacg aagacctaga atcagtacaa gaggatgcac       600
     catcatatga tgtgaaggtt ttccttggtg atgccaatgc taaagtagga agagaggata       660
     ttgcaagacc ttacgctggc cttcacagcc tgcatgattc ctctgacaac aatggaatga       720
     gattggtcaa cctggcagtt caaaaaactt aagaattatg agtacttact ttcctcacaa       780
     agacatctac aagataacat ggaagtcacc tgaccaagag actcagaacc aaatagacca       840
     catacttgtg gatgccagac acagaagtgc tatccagaat gtaaagtctc aaagaggtgc       900
     agaaatagga tcagaccatt accttgtgct gactactata caggcgagga tagaaagtcg       960
     taacatcagg agaagaggag cagaccagaa aataaatgca gacctactga aagaggacca      1020
     cattaaggac agatatgcac ttgaaatcag aaacaggttt gctgacatag aagaagaaga      1080
     tgaagataac atagaaaagc tttggtccaa actcaagata ggcgttaaag atgcagcagc      1140
     tgaggtgttg aaaccattgg agagaaggag gaagaacaga ggatggttta atgataggtg      1200
     tagagatgcg gtcaccaaga ggaaagcagc gaaactgtta tggctgacaa atgaacatga      1260
     caaagaacaa ggttgagata catggaagca gctaaagaag caagaaaagt cctgcgaaca      1320
     gaaaagcgag agttcataaa cagcaagata aaactggcag aagaagactg gacagcaggc      1380
     aatcaagaga cttttacagg acagtcaggt ttttcaagaa aggatataac ccaaggattg      1440
     acatgattaa aggtcaagaa ggacagatca tcacagatga aatgaaagct atggaagaat      1500
     ggaaaaacta cttcgaaaac ctcctgaatg tggacgcaaa caccaacagt gctgcaacag      1560
     aagaagaaga caaagaatca aatagagaaa acagagaggc agtaccatca ggggagtatg      1620
     aattaccaag catggaagag gtaagagcaa ccataaaaat gctgaagagg gggaaggcac      1680
     caggaataga tggcatacck gcagagatgc tgaaggaggg tagagctact ctacaagaga      1740
     gactatacca cctaatatgc ttaatctgga agaaggaaag gatcccggaa gaatggaagc      1800
     agtctgtcat ctgccccata ctaaagaaag gagacccaat gagatgtagc aactatagag      1860
     gaatcacact actgtgtaca gcttataagg tcttgagcat gttgttactg aagcgactga      1920
     caccacatgt cgagaaagtt ctgggattcc aacaagcagg ctttcagaaa gggaaagtca      1980
     actgtagacc atctacatac aataaggcaa gtgctatcaa agagctggga attccgcaaa      2040
     aatgttcact gcctttttgt agacttcaaa gcatatgata gtctgaacag acaagcaata      2100
     tggcaagaac tcgaaagggc tcaagtaccc agaaaactca taaaactaac acaagtatgc      2160
     acccaagaaa caacatgcat ggtgaaagtg aacggaaaca tgtcagagaa gttcaaggtt      2220
     aggactggag tgcgacaagg agactgcctc tccccccttc tgtttaacct ggtactggag      2280
     agagctctga gaacagtggc aagcctagag acaggaacag agttgggaag aaggatcaac      2340
     accctggcct atgcggatga tgttgttcta atagcagaga gagagagcaa gacctggttc      2400
     agatgacaag agcattaata gaagaggcaa tgagaacagg cctgaagttg aatatggata      2460
     agaccaagta cctcgtagtt agcagagaaa atgatgacag acctctaaat gtggatgaca      2520
     aagtctttga aagggtaaaa gactttaaat accttggggc aatactcaat gaaaggaacg      2580
     agatagacca ggaaattacc gcacgaatac aagctggaaa caggtcaagg tttgctctgg      2640
     gaaagctact aaagtcccgg ctactatcga gatcctcaaa gaccaacact acaataatac      2700
     aacctgtagt cttatatgga gcagagacct ggactattac ccgaaagatg gaaagaaaac      2760
     tcctgacatt tgagaatgcc atcctcagac agatttttgg gccagtgaag gatggagatg      2820
     aatggagaaa aagaaagaac cgtgaattgc aggagttatt caagtcatgg acatcgtggc      2880
     agtgatcaaa gaaagaagac tgaagtggta tggacacgta atgcgtcgag aaggccagat      2940
     catcaggcag gtagttgaag aagacaccag aggcaaaaga ccaaggggaa gaccacgact      3000
     gcgatggact gaccagatca gagaggatat gagtacgctg ggactgtctg aagaagatta      3060
     catggaccga ggacgctgga ggaggctgat tggtgaggcc aaagaccgac tgcggtttgt      3120
     gtggccaacg cagtaagtaa gt                                               3142
//
ID   RTE-51_LMi  repbase;    DNA;    INV; 3027 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 20.01, Created)
DT   17-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-51_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3027
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 297-297 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(234..509,475..774)
FT                 /product="RTE-51_LMi_1p"
FT                 /translation="MALYVQNNESGGKTSPQSDLREGSTSRLIDSVTTTKK
FT                 KRKEEKLRIGTWNVRTLLQSGKLENAKKEMEHNNLDILGMCEVRWGGGQWR
FT                 ATERDGGGGNGELQSDDYKLFYSGEEKSGMNGVAILVRKKVKNMIMKVEYI
FT                 NSRLMMLRLKGHKKDVVLIQVYMPTSQHSDDEIEECYSRIESLVEREKKRP
FT                 AS"
FT   CDS           join(1020..1139,1121..2794,2688..3026)
FT                 /product="RTE-51_LMi_2p"
FT                 /translation="MRNAKAYPGADINSDHNLVVADVQVRLKRILVGKLKE
FT                 KLTIERKINLDALKKEGTTKKLEEEFRDKWKIREKTETINEQWNQFRDTLK
FT                 ATSREVVGRVKCKRRRKPWVTDDMILKMAERRKWKNSQTDEGKRQYRRLNN
FT                 ELRRVTDQAREKWVREICSEIETLEKEGKYEKMYRVAKELVFQGRKSKTNV
FT                 EIERKDGTLLSDPRAVQDRWKEYIDTLYEADQRPSVLPIEKEESINEDEKG
FT                 DTILRSEVKKALGELKNNKACGVDDIPAEILKSLKETGESELTSLCNHIYD
FT                 KGEWPEDFLVSIIVPIPKTNNAKKCEDHRTISLISQAAKVLLRVLNRRLYG
FT                 TLEEGLGEEQYGFRKGKGTRDAIGLLRTIGERYIEKGKEVYAVFIDLEKAF
FT                 DRVQWDKLFDILKRKGVKWKERRLIANLYQKQKARVQIGNGISEDSKIGRG
FT                 VRQGCCLSPILFNIYLEEVLESCLDGTRGVRIGGRKIDCIRFADDMVILAE
FT                 NKDTLTQMLNDLSEACTAYGMKINKKKTKSMVIGLKKRKVKIKLESEVIEQ
FT                 VTAFKYLGSWIKEDMNCQQDIKENGSGERSVPEAKKTPNQWFKQRIKEETG
FT                 IANKTSKRMALAKEAFQKQRKLLTSGLNKELRKRLVKCLIWSVALYGAETW
FT                 TLRKQDEKKIEACEMWIWRRMEKISWIDKVRNEEVLNRVGEERRMLLTIKN
FT                 RKLNWLGHSLR"
XX
SQ   Sequence 3027 BP; 1127 A; 460 C; 829 G; 611 T; 0 other;
     gggggagcct gaaacctcta gagggcgcgt ccccaggtgg cggatcgggg aacgcctccc        60
     agatatgggt ggtaggaggg aaatgaaata cctcccgcgg accaacaggc aactgcagcg       120
     tctgactcag agtgagcggc tgcaaacagc gtctgaccca gagtgggcgg ctggtatcat       180
     atgtggaaag caacgggaag ctaccacatt actgttccca aggcgcactt gacatggctc       240
     tctatgtgca aaataatgaa tccggaggta aaacatcccc tcaatcggat ctccgggagg       300
     ggagtacatc gaggctaatt gatagtgtaa cgacaacgaa aaagaaaagg aaagaggaaa       360
     agctaaggat tggtacatgg aacgttcgca ccctgctaca atctggcaaa ttggaaaatg       420
     caaaaaaaga gatggagcac aacaatctag atattcttgg aatgtgcgag gtgagatggg       480
     ggggggggca atggcgagct acagagcgat gattacaaac tattttattc aggcgaggaa       540
     aaaagcggaa tgaatggagt agctatcttg gtaaggaaga aggttaaaaa catgataatg       600
     aaggtggaat acattaatag cagattgatg atgctgaggt tgaaaggtca caagaaagat       660
     gtagttctga tacaggtcta catgcctacc agccaacaca gtgatgatga gattgaagaa       720
     tgctacagca gaattgaatc actggtggag agagagaaga aaaggcctgc atcgtagtaa       780
     tgggagattg gaacgcggtg gttggcgaag ggaaagacgg agatgtggtg gaaagtttgg       840
     tttgggaaag agaaacgaaa gaggcgcgag aatggtcaga ttttgtaagg aaaacgcatt       900
     cgtagttgga aacacacttt ttgaacatca caaaaaagaa ggtacacatg gacatcgaac       960
     atagacaata acagatacca gatgattaca tactaataca gagtagattc cggacctgca      1020
     tgaggaatgc caaagcttat cctggagccg atattaattc cgaccacaat ttggttgtag      1080
     cggatgtgca ggttagattg aaaagaattt tggttggtaa attgaaagaa aaattaactt      1140
     agacgcccta aagaaagaag ggacaaccaa aaaacttgaa gaagagttcc gagacaagtg      1200
     gaaaattaga gaaaagacag agaccataaa tgagcagtgg aaccagttca gagacaccct      1260
     gaaagcaacc agtagagaag ttgttggtcg ggttaagtgc aagcggagaa ggaaaccatg      1320
     ggttaccgac gacatgatct tgaagatggc agaaaggaga aaatggaaaa actcacaaac      1380
     tgatgaagga aaaaggcaat acagaagact gaacaatgag ctgagaagag taactgatca      1440
     ggccagagaa aaatgggtaa gagaaatctg ctcagaaatt gagacactgg aaaaagaggg      1500
     caagtacgaa aagatgtatc gagtagccaa agaattagta tttcagggaa gaaagagcaa      1560
     aactaatgtg gaaatagaaa ggaaagatgg aactctatta agtgacccac gtgctgttca      1620
     ggacagatgg aaagaataca tcgatacact ctatgaagcg gatcaaagac cttccgttct      1680
     accgattgag aaggaagaat caataaacga agatgaaaag ggagatacca tcttacgttc      1740
     agaagtaaaa aaggcactgg gagaacttaa aaacaacaaa gcgtgtggtg tagatgacat      1800
     tccagccgaa atcttgaaga gcttaaaaga aacaggcgaa agtgagttga cctctctttg      1860
     caaccacatc tatgacaaag gggagtggcc agaagacttt ctcgtaagta taatagttcc      1920
     aatcccaaag actaataatg ctaaaaagtg tgaagatcac aggacaatca gcctaatatc      1980
     gcaagcagca aaggtacttc ttcgagttct gaataggagg ctttatggaa cgctggaaga      2040
     aggacttgga gaggaacaat atggtttcag aaagggaaag ggaacgcgag atgcaattgg      2100
     actcctaaga accatcggcg aaagatatat tgaaaagggt aaagaagtgt atgctgtctt      2160
     catagatctc gaaaaggcat ttgatagagt gcagtgggat aagctgttcg acatcttgaa      2220
     aaggaaggga gtaaagtgga aggaaagaag actaattgca aatctgtacc agaaacagaa      2280
     ggcacgagta caaataggta atgggatctc tgaagacagc aagattggga gaggtgtcag      2340
     acaaggctgt tgtctctctc caattttatt taacatttat ctggaagaag tactggaaag      2400
     ctgtttggat gggacaagag gagtaaggat aggtgggagg aaaattgatt gtataagatt      2460
     tgctgacgac atggtcatcc ttgcagaaaa taaagataca ctgactcaaa tgctaaatga      2520
     tctgagtgaa gcctgtacag catatggcat gaaaattaat aaaaagaaaa cgaaaagcat      2580
     ggtcataggt ttaaagaaaa gaaaagtgaa aatcaagttg gagtcagagg tcatagaaca      2640
     ggtgacagca ttcaagtatt tgggaagttg gattaaggaa gatatgaatt gccaacaaga      2700
     catcaaagag aatggctctg gcgaaagaag cgttccagaa gcaaagaaaa ctcctaacca      2760
     gtggtttaaa caaagaatta aggaagagac tggttaagtg tctaatatgg agtgtggcct      2820
     tatatggagc agaaacgtgg acattgagaa agcaagatga gaagaaaatt gaagcttgcg      2880
     aaatgtggat atggcgtagg atggagaaga tcagctggat cgataaagtc agaaatgaag      2940
     aagtactgaa cagagttgga gaggaacgga ggatgttgct gacgataaag aacaggaaac      3000
     tgaactggct aggccacagt ttaagac                                          3027
//
ID   RTE-52_LMi  repbase;    DNA;    INV; 3489 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 20.01, Created)
DT   18-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-52_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3489
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 298-298 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(514..966,933..1715,1637..2023,2050..2250,
FT                 2244..2468,2413..3123,3084..3446)
FT                 /product="RTE-52_LMi_1p"
FT                 /translation="MKVGKLKHLTDTLSKRNILILALQETRYLDENAIESG
FT                 GYRIYKGKPAIRNSNNTTMLGTAFMVKQQYTGSITNFNSPSERISFLTFKS
FT                 GNKRYTIINAHAPINQHNRTNIEKVEDFWEMLESETSKLPDENIKILVGDF
FT                 KHKLAKKENLNQAQVGKERKFKSVVGDYPAHERTNRNRESLIDFCKQFNLK
FT                 LMTTFFRKLARKKKTWVSPNPNQGEYQLDHVAIXTCNHKEILDVRVRKGLN
FT                 IDSDHYLTEIKTKFQPNKPKVKPKRFQRVKLNSSYKNRDKFCDILSTRKME
FT                 DWEEIKETMMESVKEMGQPRRIPRHRWWNELCDEAIDNRLKAWKKWNSNKK
FT                 CEYWEEFKEERKKTAKIIRSVKRKYGKHRLEEMDSDFKKNNTRDFYKTFRD
FT                 ILTGFQSPSLLLKIKMETGLLQNFQGHIDRIPITKSTFKDKNGNMILSNKE
FT                 NCQLLAEYFENLLNCEEPTDRLHFQKPQHENPPSEPPTIEEIGEIIKSLKN
FT                 NKAPGEDGIVAEMWKLGGLSAWQKIHTVIKDIWTKGSIPSDWKQHHNNYRG
FT                 ISLLPVTYKILSKALLNRIEKQVGSNIGEYQAGFRKGRSCAEQIINLKTIL
FT                 RVRAIQNKNTEHIVTFVDFKKAYDSVDRQSLFQILYESGIDENTRRLVEQT
FT                 LTDTTSRIKFQGEILNIQNQNRCSTRRRTFPNSLTFKIKTGVRQGDGLSPI
FT                 LFNLVLDKIVKTWENTLETRGIKGINMGQGKNKFEVKCLAFADDIALITEN
FT                 QADATVMLDLLHETAEKTGLKISYEKTEYIAHKHNGEKIMKTKYGKIKRVD
FT                 KFKYLGEWIQANGLDNTTNKERVKKLEFAYKLTQNYYNKKSISIQAKLRHY
FT                 NSVIKTQATYGSECLTLNKKCELRELEKRERKILRKILGPEKNNENIWMKR
FT                 RNEDLYKNTEKKSQIQGFIQKYRKKITDTMRKRRLKFYGHLKRMEDTRITK
FT                 KXFNYVNKLKKTVGWIEAVKKDANKIGVTEEIICDRNRFRLLIENATYEED
FT                 KPKPRPKRVWTDDQRRAVGEKMKKYWEERKRKKHH"
XX
SQ   Sequence 3489 BP; 1458 A; 587 C; 690 G; 749 T; 5 other;
     caaagccagt ccaagccggt tgaaaaagag gaggggagaa gtaacacctc gttaaaaaaa        60
     ctcctggccc gggtgatagc acctgtgagg gccccttgcc agggtacggt gaagacctca       120
     acggcagaac tggcggaaga ggcaggcttt tacgtaamag cacaggactg tagcgtctgt       180
     tcccacagtg ggcggctaca aaaggcgtct gttccacatg tcagtggcgg cctcatttac       240
     aattctaagc taaatgcttg aattttaatc atggaaaggt tcaactatct ttccccaact       300
     aaactttaac taagacatga tggtaaattt saaaacggaa actactccag gaagtaacca       360
     atcttccatc gctagtcata cgatgcaact aggcctttgg attstggaga gcctagaaca       420
     tcatgtgagg aagcgtcgga gcttcctaga acttcttcaa aaataaggcc caagaaaaaa       480
     cacctactgg gcactctgaa catcaacaca ctaatgaaag tcggtaaact gaaacatcta       540
     acggacactc tcagtaaacg gaacatactc atattagctc ttcaggaaac aagatatctg       600
     gatgaaaatg ctattgagtc aggtggatac agaatttaca aaggaaaacc agccattaga       660
     aattccaata atacgactat gttagggaca gcctttatgg tcaaacagca atatacagga       720
     tcaataacaa attttaactc cccatcagaa agaatttcat ttttgacttt taagtcaggc       780
     aataagcgtt acaccattat aaatgcacac gcacctatca accaacacaa cagaacaaac       840
     attgaaaaag tggaagattt ttgggaaatg ctagaatctg aaacatccaa actaccagat       900
     gaaaatatca aaattttagt gggagacttt aagcacaagt tggcaaagaa agaaaattta       960
     aatcagtagt gggagactat ccagcacatg aaagaacaaa cagaaacagg gaaagtctca      1020
     tagacttttg taaacaattt aacctaaaac taatgacaac atttttcagg aaacttgcaa      1080
     ggaagaaaaa aacatgggta tcaccaaatc caaatcaagg tgaatatcaa ctagatcatg      1140
     tggcaataaw tacttgcaac cacaaggaaa tcttggatgt tagagtgagg aaaggcctaa      1200
     atatagactc agaccattat ctgacagaaa taaagaccaa gtttcaaccc aacaaaccta      1260
     aagtaaaacc aaaacgattt caaagagtaa aactaaattc ctcatacaaa aatcgggata      1320
     aattctgtga tatattaagc acacgaaaaa tggaagactg ggaagaaatt aaagaaacaa      1380
     tgatggagtc agttaaagaa atgggacaac cacgaagaat accgagacac agatggtgga      1440
     atgagttatg tgacgaagcg attgacaatc gactaaaggc atggaaaaaa tggaacagta      1500
     ataaaaaatg tgaatattgg gaagagttta aagaagaaag gaagaaaaca gcaaaaatca      1560
     tcagatcagt aaaaagaaaa tatggtaaac acagattaga agaaatggat tcagatttta      1620
     aaaagaacaa cactagggac ttttacaaaa ctttcaggga catattgaca ggattccaat      1680
     caccaagtct acttttaaag ataaaaatgg aaacatgatc ttaagcaata aagaaaactg      1740
     ccaactgtta gctgaatatt ttgaaaatct attgaactgt gaagagccta ctgacagatt      1800
     acattttcaa aaaccacaac atgaaaatcc accatcggag ccacctacaa tagaagaaat      1860
     cggcgagatt atcaagtcgt tgaagaataa caaggcacca ggagaagatg ggatagtagc      1920
     agaaatgtgg aaactagggg gcttatccgc atggcagaaa attcacacag taattaaaga      1980
     catttggaca aaaggaagca tacccagtga ctggaaacaa cactgatcac agaaaggaga      2040
     taaaactgac acaacaacta caggggcatc tccttgttac cagtgacata caaaatattg      2100
     tcgaaagcac ttctaaatag aatagagaaa caagtaggat ctaatatagg agaataccaa      2160
     gcaggattta ggaaaggcag atcatgtgca gaacagatta ttaatttaaa aaccattttg      2220
     agagtgagag ctatccaaaa taagaacaca tagttacttt cgtagacttc aagaaggctt      2280
     acgactcagt tgacagacaa tcactatttc agatactgta cgaatcaggg atagatgaaa      2340
     ataccagaag acttgttgaa caaacactca cagatacaac atcaaggatt aagtttcaag      2400
     gcgaaatttt gaacattcaa aatcaaaaca ggtgttcgac aaggagacgg actttcccca      2460
     attctcttta acttggttct agataaaata gtcaaaacat gggaaaacac actagaaacg      2520
     agaggcataa aaggtataaa catgggacaa ggaaagaaca aatttgaagt aaaatgttta      2580
     gcctttgcgg atgatattgc actgataact gaaaaccagg cagatgcaac tgttatgctt      2640
     gatctattac acgagactgc tgaaaagact ggactaaaaa tatcttacga aaaaaccgaa      2700
     tatatagcac acaaacataa tggagaaaaa attatgaaaa caaagtatgg gaaaattaaa      2760
     agagttgata aatttaaata cctaggggaa tggatccaag ccaacggtct agataacaca      2820
     acaaataaag aaagagtaaa gaagttagaa tttgcttaca aattaacaca aaactactac      2880
     aataagaaat caatatccat ccaagcgaag cttagacatt ataattcagt tattaagaca      2940
     caagcaacat atggctcaga gtgcctcaca ttgaataaga aatgtgaact aagagaacta      3000
     gaaaaaagag agaggaaaat actaagaaaa attctgggtc ccgagaaaaa caatgaaaac      3060
     atatggatga aaaggagaaa tgaggattta tacaaaaata cagaaaaaaa atcacagata      3120
     caatgaggaa aagacggcta aaattttatg gacatttaaa aagaatggaa gacacacgga      3180
     ttacaaagaa aawttttaat tatgttaata aactgaagaa aactgtagga tggatagaag      3240
     cagtgaagaa agatgcaaac aaaataggtg ttacagaaga aataatatgt gacaggaatc      3300
     gcttcaggct actgatagaa aacgcaacct atgaagaaga taagcccaaa cctcgaccaa      3360
     agagagtgtg gacagatgac cagagacgag cagttggaga gaaaatgaag aagtactggg      3420
     aagaaaggaa gagaaagaaa caccattagt cttaagttgt atgcggtcca tagctggcca      3480
     aattcataa                                                              3489
//
ID   RTE-53_LMi  repbase;    DNA;    INV; 3254 BP.
XX
AC   .
XX
DT   25-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   RTE-53_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3254
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 299-299 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           244..1071
FT                 /product="RTE-53_LMi_1p"
FT                 /translation="QPASQVLQYHAGNNQSKMPRTFGGDGVPPLIDRPGTP
FT                 PIRLGKRSGMRWGAININGDYTGKKVELAEASSKMGLDVLAVSDVRVRGEK
FT                 EDEVGEYKVYLSGVKVGRAQWGVGFYIRKAIEPSIIAIRYVNERLMWIDLA
FT                 ISSKKIRIVAVYSPCEGTDQDEMDRFYNALSDVVVRVKDKDSVLLMGDFNA
FT                 RIGNRTEGYEKVMGKFGEDMEANRNGKQLLDFCSSMGLVITNSFFKHKDIH
FT                 RYTWEGRGTRSVIDYIITDQEFRKTVKDTRVFRVL"
FT   CDS           join(1150..1329,1305..1613,1507..3216)
FT                 /product="RTE-53_LMi_2p"
FT                 /translation="KDKSGEADRNWTNTYNDLGKVPVVECNDLVLEEEWQG
FT                 HTTGAVENVLERVCKGGRRDSGERRKKRQWGMTQSRQRKKKRRFQMVHIKE
FT                 IIEEKTKPNGNCRSKQKSWEDFGKTRNSGSSRGKTFWSVISNLRKGGKGIN
FT                 KCFGQVRKAASQSCGCLEQMEGIFLAIFEREEKELTSVLDRSGKLLVNPVD
FT                 ALSRWREYFEELLNVGETFNDVSDFQVEWDRNDDGNRISFEEVEKMVSRLQ
FT                 CNKAAGVDEIKPELVKYSGISGLKWLHRIIEKAWESGQVPSDWTKAVITPI
FT                 FKHGNRKDCNNYRGISLISVVGKIFSGIVERRVRVLIEDKLDENQCGFRPL
FT                 RGCQDQIFSLRQVMEKCYEWNRELYLCFIDLEKAYDRVPRRKLLSVLQDYG
FT                 IGGKLLQAIKGLYVDCQAAVRVDGKLSSWFRVVSGVRQGCNLSPLLFILFM
FT                 DHMLKTVDWQGGIKIGENKISSLAYADDLVVMADSIERLQTNISELDQRCK
FT                 DYDMKISISKTKVMSVGKRFKQIECQIGGTKLEQVDSFKYLGCIFSQDGNI
FT                 VKELESRCSKANAVSAQLRSTLFCKKEVSTKTKLAVHRSIFRPTLLYGSES
FT                 WVDTGYLIHKVEVTDMKVARMIAGTNRWEQWQEGVHNEEIKEKLGMNTIDE
FT                 AVRANRLRWWGHVTRMGEARLPKRLMSSAAEGKRSRGRPRRKYLDSVQNDF
FT                 EVKGITSDEASMLALNRGSWRNFIRGTMLQTER"
XX
SQ   Sequence 3254 BP; 1071 A; 502 C; 901 G; 780 T; 0 other;
     ggttcatggt gtgggttcct gtagtcatgt cctagttcat gaaccacggg caacgtatga        60
     gtggccaagt aagtggtcct gacagttggg ataccagtta ctttggaata aggttgggca       120
     tctcggacat attctgagtc gtggccacct ttgtgctcag acggcaaaga ctaccaaatc       180
     caccggttag tccctcaacc gttaggggta aaacccagtg gggccctggg caagtaaggc       240
     tagcaacctg cttcccaggt acttcaatat catgctggca acaatcagag caaaatgcct       300
     cggacctttg gaggtgatgg agtcccacct ctaattgaca gaccagggac tcctccgata       360
     cgacttggca aacgatctgg aatgagatgg ggagctatta atatcaatgg ggattacact       420
     gggaagaagg tagagctggc ggaggcttca agtaagatgg ggttagatgt cttagctgtt       480
     agtgacgtta gagtaagggg agagaaagag gacgaagtcg gagaatacaa ggtctacctg       540
     tcaggagtca aagtaggaag agcacagtgg ggtgtagggt tttacatcag gaaagcaatc       600
     gaacccagca taattgcaat aaggtatgta aatgaacgac tgatgtggat agatttggcc       660
     atctccagca agaaaattag gattgtggca gtgtattcac cctgtgaagg gacagatcaa       720
     gatgagatgg acagatttta caacgcactt agtgatgtag ttgttagagt gaaggataag       780
     gatagtgttt tactcatggg tgatttcaac gccaggatag gaaatcgaac agaaggttat       840
     gaaaaggtta tgggtaagtt tggagaggat atggaggcca acaggaacgg aaaacagctc       900
     ttggatttct gttccagtat gggcttagtt atcacaaact ccttctttaa gcataaggac       960
     attcaccgct atacttggga aggaagggga accagatctg tcattgacta tataataaca      1020
     gaccaggaat tcaggaagac agtcaaggac acacgtgttt tcagggttct ttgatgatac      1080
     tgatcattat ttaatctgca gtgaaattgg ttttgtgagg ccaaaaggca aagtcaggtc      1140
     catgtgtaga aggataagag tggagaagca gacagaaatt ggacaaatac atacaatgat      1200
     ctcggaaagg taccagttgt tgaatgtaat gatttagtac tggaagagga atggcaagga      1260
     cacactactg gagcagtaga gaatgtcttg gaacgtgtgt gtaaaggagg aagaagagac      1320
     agtggggaat gacacagtca aggcagcgta aaaaaaaaag aagatttcaa atggtccata      1380
     taaaagaaat tattgaagaa aaaacaaagc caaacggaaa ttgcagatcc aagcagaaat      1440
     catgggaaga ctttggaaaa actagaaact ctgggtcaag ccgcgggaaa accttttgga      1500
     gcgtaattag caatcttcga aagggaggaa aaggaattaa caagtgtttt ggacaggtca      1560
     ggaaagctgc tagtcaatcc tgtggatgcc ttgagcagat ggagggaata ttttgaagaa      1620
     ttgctcaatg taggtgaaac gttcaatgat gtgtcagatt ttcaggtaga atgggatagg      1680
     aacgacgatg gaaacaggat ctcatttgag gaagtggaga aaatggtcag tagattacag      1740
     tgcaataaag cggctggggt ggatgaaatt aagccggaac tcgtcaaata cagtggaata      1800
     tcaggtctca aatggttaca caggataatt gagaaggcgt gggaatcggg acaggttccg      1860
     tctgactgga cgaaagcggt aatcacgcca attttcaaac atggaaacag aaaagattgt      1920
     aacaactatc gaggtatctc tttaattagc gttgtaggca aaatattctc aggtattgtt      1980
     gaaaggagag tgcgagtatt aattgaggac aagttagatg aaaatcagtg tgggtttagg      2040
     cctcttagag gctgtcagga ccagatcttt agcttacggc aggtaatgga aaagtgctat      2100
     gagtggaaca gggaattgta tctatgtttc atagatctag aaaaggctta tgaccgtgtt      2160
     cctaggagga agctactgtc agttctacaa gattatggta taggaggcaa acttctgcag      2220
     gcaattaaag ggctttacgt agactgtcag gcagcagtta gagtagatgg caaattaagc      2280
     tcatggttca gggtagtttc aggggtaaga caaggctgta acctgtcacc actgttgttc      2340
     atactattca tggatcatat gttgaaaaca gtagactggc agggcgggat taaaataggt      2400
     gaaaacaaaa taagcagtct cgcatatgcg gatgacttag ttgtaatggc cgattcgatt      2460
     gaaaggttgc aaactaatat ttcagagctc gatcagaggt gcaaggatta tgatatgaag      2520
     atcagcatct ccaaaacgaa agtaatgtct gtgggaaaga gatttaaaca gattgagtgc      2580
     caaataggag gaacaaagtt agaacaggta gacagtttca agtacctggg atgtattttc      2640
     tcacaggatg gcaacatagt gaaagaactg gaatcgaggt gcagcaaagc taatgcagtg      2700
     agtgctcagc taagatctac tctcttctgc aagaaggaag taagtaccaa gactaagtta      2760
     gcagtgcacc gctctatctt tcgaccaact ttgttgtatg ggagtgaaag ttgggtggat      2820
     acaggttacc ttattcataa ggtagaggtt acagatatga aagtagcaag aatgattgca      2880
     ggtactaata gatgggaaca atggcaggag ggtgtccata atgaggaaat caaagaaaaa      2940
     ctgggaatga acaccataga tgaagcagtt agagcgaaca gactgagatg gtggggtcat      3000
     gttacacgca tgggagaagc aaggttacct aagagactca tgagctcggc agcggagggt      3060
     aagaggagtc gaggtagacc aagaagaaag tacttagatt cggtgcagaa tgattttgaa      3120
     gtaaaaggca taacatcaga cgaggcatca atgttagcat tgaatagggg atcatggagg      3180
     aattttatta gaggtactat gctccagact gaacgctgaa aggcataatc agtctctaat      3240
     gatgatgatg atga                                                        3254
//
ID   RTE-54_LMi  repbase;    DNA;    INV; 3510 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-54_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3510
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 300-300 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(313..1026,1023..1754,1712..1924,2053..2181,
FT                 2175..3470)
FT                 /product="RTE-54_LMi_1p"
FT                 /translation="MTTGISGPLSTKGQQPPWRVEELVEVQGTLMPLNEKS
FT                 FLKAEEPIGGQRHRMRKARGTTALKTFVVSLVPLDKILHRMAVPEKKYSGV
FT                 KCPQSDLRVGTIPGKQCTVKLXKKKTEVPGLRIGTWNVRTMNEKGKLENVK
FT                 REMKRYDISILGLCEVRWEGEGELVSGEYKMIYKGGDRKEGGVGLLYKKTL
FT                 DKNIIKVIPVSDRVIAMKILTEPVTLVVQVYMPTSEADEEEVDKIYERTIE
FT                 EVFEENGKGQIRTVIMGDWNSVVGSGRHGNIVGDYGLGQRNDRGDKLIGFC
FT                 ESFGFWIANTWFQNHKRRLYTWKSPGDRARYQIDYILTNQRFKNSIRMSKA
FT                 CPGADANTDHNLLIADIRTKMKHIKKKELVKKWNLLKLKNEDAKSFTSSIE
FT                 EKLGMARPKLDVNEEWLSIRDAILESLENDVGKMEKRNKKEWITQNVLDKM
FT                 EERRKWKNDNSEEGKRQYRKLNNELRRTTDKARENWMRTEEDYRQSKRKLD
FT                 VNNVKNSWKDKEKQTKCIDCKVYNNERTAKNYKQGILNKMGKITKNTEENK
FT                 LFGRHTRKESAGCDQIPAEALKALGNGAIIRLTNLVNKIYDTGIWPKDSRL
FT                 VKTIMVPLPKKCNAKQCKDFRTISFICSVTKAVTRLVLRRIDRKIEEHIGE
FT                 DQFGFRKGRGTRDAIGCLRMLTERFLEVNRGIYVCFVDWEKAFDRVNWSML
FT                 LKILRDAGIDWKDRRLIKQLYVGQKVVVRVEEDETEEVSIGRGVRQGCCMS
FT                 PALFNIYAEKLIDEALEEAKGLVVGGEKIKTIKYADDMIVLAETEESLQEM
FT                 MENIVRVGKDFGMRLNIDKTKVMKIGKEDDTIKISLEGRVLEQVQSFQYLG
FT                 SMITSSGSCTEEVRRRISMGKKAFRKVKDLLTTKSIPITLRKRFAKCFVWS
FT                 VVSYGSETWTIRQKEQKYLESFEMWLWRRMEKVKWTDRMKNEEVLRRVGEE
FT                 RTFIRTIQKRKTSWLGHILRRNCLLLRIMEGKVEGRRGRGRRRFGMLTDLK
FT                 KGRNYRQMKEDAQNRAKWRTSS"
XX
SQ   Sequence 3510 BP; 1321 A; 521 C; 909 G; 756 T; 3 other;
     cccagggact cacactaktg agtacgtggc tggcaaccat ggggtcccga gctgagtcct        60
     ggcattgctt aaacttactt atgccagact cctcacttta tctttcctat ctgaccatcc       120
     tctgktcacc tcttgtttct ttccgaccct ggtgctatta ggtttcaagg gctaggggtc       180
     tttcattttc taacctatac ttctcatctg ggatagtcaa tggcctggaa ggcggaagag       240
     ggtgattact aacacctcaa cggcagaaac ggcgaatgaa ccaccatcac caaacacatg       300
     atgtaacacc gaatgactac cggtataagt ggtccccttt ccaccaaggg ccaacagcct       360
     ccctggaggg tggaggagct ggtggaagtc cagggcaccc tcatgccctt aaatgagaaa       420
     tcatttctaa aggcggaaga accaatagga ggtcaacggc ataggatgcg gaaggcaagg       480
     ggaaccaccg cattaaagac ctttgtggta tccctagtcc cactggacaa aatccttcat       540
     cgaatggctg ttcctgagaa gaaatattcc ggagtaaaat gcccacaatc ggatctccgg       600
     gtgggcacta tcccaggtaa acagtgcact gtgaagttac akaagaaaaa gacggaagtt       660
     cccggtctga ggattggaac ctggaatgtg agaacaatga atgagaaagg taaactagaa       720
     aacgtgaaga gagaaatgaa gagatatgac atcagcattt taggactttg tgaggtgaga       780
     tgggaaggag aaggagaatt ggtttctgga gaatataaga tgatttacaa gggaggagac       840
     cgcaaagaag gaggagtagg cttattgtac aagaagactc tcgataagaa cataatcaaa       900
     gtaatccctg tcagtgacag ggtgatagca atgaaaatat taacggaacc tgtaacctta       960
     gttgttcaag tgtacatgcc tacatcagaa gcagatgaag aagaggtgga caagatttat      1020
     gaacgataga agaggtattt gaggaaaacg gtaaaggtca aataagaaca gtgatcatgg      1080
     gagactggaa cagcgtggta ggaagtggaa gacatggaaa cattgtcgga gattatggac      1140
     tgggacaacg aaatgacaga ggagataaac tcatagggtt ttgtgagagt tttggctttt      1200
     ggattgccaa cacctggttc caaaatcata aaagaagatt gtacacttgg aaaagccctg      1260
     gtgatagagc cagataccag atagattaca tcttaacaaa tcaaaggttc aaaaacagca      1320
     tcaggatgtc taaagcttgc cctggagcag atgccaatac agatcacaac ctgcttatag      1380
     cagacataag aaccaagatg aaacacatta aaaagaaaga acttgtaaag aaatggaatc      1440
     tgttgaaact gaaaaatgaa gatgccaagt cgtttaccag tagtatcgaa gaaaaattgg      1500
     gaatggcgag accgaaactg gatgtaaatg aagaatggct ttccattaga gatgcaatac      1560
     tggaaagttt agagaacgac gttggaaaaa tggaaaagag gaataaaaag gaatggatca      1620
     cacagaatgt attagacaaa atggaagaac ggagaaaatg gaaaaatgac aattcagaag      1680
     aaggaaaacg acagtatagg aagttgaata acgaactgag gaggactacc gacaaagcaa      1740
     gagaaaactg gatgtaaaca atgtgaaaaa tagttggaaa gacaaggaaa aacagacgaa      1800
     atgtatagac tgcaaagtct ataacaatga aagaaccgcg aaaaattaca agcaaggaat      1860
     actaaacaag atgggaaaaa taacaaagaa tactgaagaa aacaaattgt ttggaagaca      1920
     tacatagaag atctatacaa ttctgcagct gatcatgaag gactggtact agaggataac      1980
     aagaatgtga tgaaaataac tggggacctc taatagaaaa atgggaggtg gagaagcaat      2040
     ccaggatctt aaagaaagga aagcgcgggc tgtgatcaaa taccggcaga agcactgaag      2100
     gcattaggga atggtgctat aatcagactt acaaatctgg tcaacaaaat atatgacaca      2160
     ggtatctggc ctaaagactc gtaaaaacta taatggttcc attaccaaag aaatgtaatg      2220
     ccaaacaatg taaagatttt aggacaatta gttttatatg tagtgttacg aaagctgtga      2280
     ccagactagt gctaagaaga atagacagga aaatagagga gcatatagga gaagatcagt      2340
     tcggatttag aaaaggaaga ggaaccagag atgcaattgg gtgccttagg atgttgacag      2400
     agagattttt agaagtgaat agaggaatat atgtctgttt tgttgactgg gaaaaggcgt      2460
     ttgacagagt taactggagt atgctgttga agattttgag agatgctggt atagattgga      2520
     aagatagaag actaataaaa caactttatg ttggacagaa agtggtagtt cgagtagaag      2580
     aagatgaaac tgaagaagtc agtatcggaa gaggtgtgag acagggttgt tgtatgtcac      2640
     cagcactttt caatatatat gctgaaaagc taattgatga ggccttggaa gaagcaaaag      2700
     gacttgtagt gggaggagaa aaaataaaaa ctataaaata tgcagatgat atgatagtat      2760
     tagcagaaac agaagaatcg ctccaggaaa tgatggaaaa tattgtaagg gtgggtaaag      2820
     attttggaat gcgattaaac attgataaga ccaaagtcat gaaaattgga aaagaagacg      2880
     acacaatcaa aatatcatta gagggaagag tattggaaca ggtgcaatcg tttcaatatt      2940
     tgggaagcat gataacatcc agtggaagtt gcacagagga agtaaggcga agaatctcta      3000
     tgggaaagaa agctttcagg aaagtaaaag atttgctaac aaccaaaagt attcccatta      3060
     ctctaaggaa gaggttcgcc aaatgttttg tgtggagcgt ggtgtcatat ggatctgaaa      3120
     cgtggacaat cagacagaaa gaacaaaaat atttagaaag ttttgaaatg tggctatgga      3180
     gaagaatgga aaaagtgaag tggaccgaca gaatgaaaaa tgaggaggtg ttgcgcaggg      3240
     taggagagga aaggaccttc attaggacaa tccagaagag gaaaacatct tggttggggc      3300
     acatattacg taggaattgt ctgctgctaa gaataatgga aggaaaagta gaaggaagaa      3360
     gagggagagg aaggagaaga tttggaatgc tgactgacct gaagaaagga aggaactaca      3420
     ggcaaatgaa ggaggatgcc cagaacagag cgaagtggag gacgtccagt tgaaacctgt      3480
     ctgaggacag acctactcaa agaagaagaa                                       3510
//
ID   RTE-55_LMi  repbase;    DNA;    INV; 2999 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-55_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2999
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 301-301 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..878,951..1253,1257..1412,1391..1864,
FT                 1740..2984)
FT                 /product="RTE-55_LMi_1p"
FT                 /translation="RFTIWNLNVQTLKGKVEEVVELMDRRKLDILGLAETR
FT                 WKGTGCRELRKGYRLHWSGKEEDGRYGVAVVVREGMKEEVKGISDRMMKIR
FT                 VKVKGRDIEVLQVYAPQVGCSAQEKEDFEEEIQRQLTGQQIIVMGDLNAHV
FT                 GKERKGYEEVMGVDGWGSRNEEGRKLLDFCKRNGLVVCNTWFAKRESHKVT
FT                 WYATICQKRWWTMWRKKKGNRKTGKRIRVWKPEMRKSKNTNSKRGGMGIRN
FT                 AVVEAAEKRDHEKRRKLLVEFRVRRKLQEERSRANKEQRKQGRNTWQGRRI
FT                 VQKRRRNGWKSQWRGTEGSKKVLYEMVQAKRGGMTENQRLIKKERKWRAYR
FT                 NSRTCRKNILRSCKEYFEELLNPNGNVEEENVESYVEQEQTEEGEKDLTWT
FT                 EVEEALKAMKGGKAPGLDEVSVEXVRAAGIVGVQWLYRVMXAIWKEKKTPE
FT                 DWKRGIIVPIFKKGCKKLFKNYRGVTLMCHMAKVYEKILERRVWKRVEKRV
FT                 ERRAVWVQTREVNSRSDFCAIWPRYTRRYWKGEYGREWKKGLREEQYGFRP
FT                 GRSTVDLIFSVRQLQEKHYEFGRDLVMDFLDMEKAYDSVEALEKRGVGRQT
FT                 AWRIREMYQGSVSCVKVGGERTDWFEQKNGLKQGSALSPLLFIIVMDEIMA
FT                 GVATRIGEDMKAMVFADDIMVWGNREGEVQERLNAWEEVVAQYGMKFNANK
FT                 CEIMVTTRNKERAAADVKIGGEIVKRVDSFKYLGSVVEESGRNDMEISERG
FT                 KQAHRFLQSVRSLVWSKDVPQKSKQVIYRQYYAPILTYASETWVMKKRQVS
FT                 RIQACEMKFHRSRIGVTRMDRMRNEKVREIVKEKPLQETIEQSRLRWYGHV
FT                 KRMEDGRIPKKTHEMEIGGRRPRGRPRDRWIMGVKEGVQKREEWDKVQEEK
FT                 WWEDRERWRGLCSKQTRPEAGNSSG"
XX
SQ   Sequence 2999 BP; 1072 A; 370 C; 1004 G; 551 T; 2 other;
     cccaaagtcc gacccctcct ccaagtggtg ggagaagaca gtggcacaaa gaggggactg        60
     cctatggggc aaagtacagt gggacttgag ggcctggcac tgccacggca gctgtgggtt       120
     ctataggaac ctgaaaagtg ccggctgact gggctctggt gaagctatgt taggcctagc       180
     tagccagtag tggataactg cacagctttc aaacaaggaa caagcctcgg aagggacaga       240
     tataatggat gacgacccag ctatactaaa ggtttacgat ttggaacctg aatgtgcaaa       300
     ctttgaaagg aaaagtggag gaagtagtgg agctgatgga cagaagaaaa ttggatatct       360
     tgggattggc agaaacgaga tggaagggca caggatgcag ggaattgaga aaggggtaca       420
     gactgcactg gagtggaaag gaggaggatg ggagatatgg agtggcagtg gttgtgagag       480
     aaggaatgaa ggaggaggtg aaaggaataa gtgataggat gatgaagatc agagtgaaag       540
     tgaaagggag ggatatagaa gtcctgcaag tatatgcgcc acaagttggg tgttctgccc       600
     aggaaaagga ggacttcgaa gaggaaatcc agagacaatt gacgggacag caaattattg       660
     ttatgggaga cctgaatgca catgttggca aggaaagaaa aggatacgag gaagtgatgg       720
     gagtggatgg atggggaagt agaaatgagg aaggaaggaa attgctggat ttttgcaaaa       780
     ggaatggttt agtagtctgc aatacttggt ttgcaaagag agaaagtcac aaggtgacgt       840
     ggtacgccac aatctgccaa aaacggtggt ggactatgtg atatgtgacc aaaatgaggt       900
     ctcagatgca ggtaatacat caagccttag acgtgatcac gggcttttag tggaggaaga       960
     agaaggggaa cagaaagaca ggaaagagga taagagtttg gaagccagag atgagaaaat      1020
     caaagaatac gaatagtaag cgaggaggaa tgggaattcg aaatgcggtg gtggaagcag      1080
     cagaaaagag ggaccatgag aagaggagga aactcctggt ggaattcaga gtgcggagaa      1140
     aattacaaga agaacgcagc cgggccaaca aagaacagag gaagcaagga aggaatacat      1200
     ggcaaggaag aagaatagtg cagaagagaa gaagaaatgg atggaagagc caatgatgga      1260
     gagggacgga gggtagtaag aaggtgctct atgaaatggt tcaggctaag aggggaggca      1320
     tgactgaaaa tcaacggtta ataaagaagg aaaggaagtg gagagcttac aggaactcaa      1380
     ggacatgtag aaagaatatt ttgaggagct gttgaatccc aatggaaatg tagaggagga      1440
     gaatgttgag agttatgttg aacaagaaca gacggaggag ggagagaaag acctaacgtg      1500
     gacagaagtg gaagaagcac tgaaggccat gaaaggagga aaagcaccgg gattggatga      1560
     agtcagcgtg gaaatkgtga gggcagctgg cattgtggga gtgcagtggc tctaccgggt      1620
     tatgakggcg atatggaagg aaaagaagac accggaggac tggaaaagag gaataattgt      1680
     gccgattttt aagaaaggat gcaagaaatt atttaaaaat tataggggag tgactttgat      1740
     gtgccatatg gccaaggtat acgagaagat attggaaagg agagtatgga agagagtgga      1800
     aaaaagggtt gagagaagag cagtatgggt tcagaccagg gaggtcaaca gtagatctga      1860
     tttttagtgt aaggcagcta caagagaaac attatgagtt tggtagagat ttggtaatgg      1920
     acttcctcga catggaaaaa gcatatgata gtgtggaagc actggagaaa aggggagtcg      1980
     ggaggcaaac tgcttggaga ataagggaaa tgtaccaagg aagtgtgagc tgtgtaaagg      2040
     taggaggaga gaggacggac tggtttgagc agaagaatgg actgaagcaa gggagtgctc      2100
     tatctcctct actattcatc attgtaatgg atgaaataat ggcaggggtt gcaacacgaa      2160
     taggagagga tatgaaagcg atggtgtttg cagatgacat aatggtgtgg ggtaatcgag      2220
     aaggagaagt acaagagaga ctaaatgcat gggaggaggt ggtggctcag tatggaatga      2280
     aatttaatgc taacaagtgt gaaattatgg tgacaacaag gaataaagaa agagcagcag      2340
     cagatgtaaa gattggaggg gaaatagtaa agagggtgga cagttttaag tatctgggaa      2400
     gtgtggttga agaaagtggg aggaatgata tggagatcag tgaaagagga aagcaagccc      2460
     acagattcct gcaaagtgtg cgaagtctgg tgtggagcaa agacgtaccc cagaagagta      2520
     agcaggtgat ataccgacag tattatgctc caatactcac gtatgcatca gaaacgtggg      2580
     ttatgaagaa aaggcaggtg agcagaatac aggcgtgtga gatgaaattc cacagaagca      2640
     ggattggtgt aaccagaatg gatagaatga gaaacgagaa ggtgagggaa attgtgaagg      2700
     agaaacctct acaagagacc atagagcagt caagactgag atggtatgga catgtcaaga      2760
     gaatggaaga tggcaggatt ccaaagaaaa cccatgagat ggaaatagga ggcaggagac      2820
     caagaggaag accaagagat agatggatca tgggagtaaa ggaaggagtg cagaagagag      2880
     aagaatggga caaagtgcaa gaggaaaagt ggtgggagga tagggagcga tggagaggcc      2940
     tatgttccaa gcagacccgg ccagaggctg gaaactctag tggatgatga tgatgatga       2999
//
ID   RTE-56_LMi  repbase;    DNA;    INV; 3307 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-56_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3307
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 302-302 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(540..1154,1270..1572,1593..1799,1793..2311,
FT                 2332..3030,2970..3284)
FT                 /product="RTE-56_LMi_1p"
FT                 /translation="MFYSCDDNRHEFGTGFLVHKYLKHLVMNFTPINPRLS
FT                 VIRIKGRFFNYSIINGHAPTEESIEDLKDDFYDALEKAYDKCPRNDIKIVL
FT                 GDFNAQLGREDMFQPVIGAHSKHGSTNDNGIRLILFAASRNMIVGSTSFPH
FT                 KEIHKGTWKSPDGRTINQIDHVLIDQRHKSNLLDVRTFRGPNVDSDHFLVM
FT                 AKIRARISNAQKERNHRTKMAAIKRAIDISAKETLGIERESIRPTWFDEEC
FT                 KRVTEEKNTAYQKTLQANCTRSLLEDYREKRRIEKMTHRRKKREWTKAEIE
FT                 CMELSKKKMKQGILKTICSITSLIRDEEGNIISEVNRLWKDGEDTLMTCES
FT                 RDEQAEDISNDCEQGLDDEQPLDGPGLEIKKAKSLRKLKNNKAPGTDSIPA
FT                 ELLKYGGATLEQSLFELITLIWEQERIPNEWNEGILCPIHKKGDRMECRNH
FT                 RGITLLNLGYKVLSNIIFDRLLPQVDKEIGMYQSGFRRGRSTIDQIFNLRQ
FT                 ILEKTVEYRIGTHHLFIDFKAAYDSINRNQLFHALQEMGIHGKLLRMVKMI
FT                 VVQGNYSDPLEIKNGLRQGDALACLLFNVALEKVIREAGLQTRGTIFYKSV
FT                 QILAYADDIDIIARTVPALKEAFTALSQASKKMGLMINEDKTKYMACGKAY
FT                 QPNMPSTFSVNGYTFERVDTFKYLGSTVTCFNDTSTEIKIRLISANKAYFA
FT                 LSNLFQSRLLSRPTKFTIYKTLVRPVLTYASETWPLTETDARLLDGFERKV
FT                 LRRIIGPVYDGEQWRKGTMQNCTLYMPMLLWRTMEERYNAELYTIYADAPV
FT                 TNIIRSGRIRWAGHVARMEESEVTKKILFGNPGGQRGRGRPRARWLDGVEE
FT                 DLRKLGCRNWRRVAYDRDGWRKLVGKAKVHPGL"
XX
SQ   Sequence 3307 BP; 1144 A; 592 C; 810 G; 759 T; 2 other;
     cttcccaggg gacacagcct tgtagtaggc accttcagtg ccgggcggga gggcttgcgt        60
     gcttccgtga agttgagagc tgtgccggca gtagcgtagc tactggcagg gtcacccaag       120
     ccgtattggt ctcaactgag aagccagacg aagagtgtcc cacaacatag ggcagggagg       180
     gctctagagg cgtagtgaag ccagcttccc taggggagga aaccttatac aaatcccggt       240
     cctccaggtt gggggttggg cttgaggcta acaacctctt cctgtaaaaa aagtcaggtt       300
     atgaaaaccc aaagagcaga agcggacaga tcaatagacg acgacatggc acggatattg       360
     gacaacgaat ggttaaaaag ctgaaaactg atcttgaatt ggtacctgga atgttcgatc       420
     tttatatagc ccaggcgctc taaagaagtt attagaccag caggggaagc tcaaggagag       480
     cattattgcc atccaagaaa ttcgatggac agggacgggg tattggaaaa gaaggcacta       540
     tgttctatag ctgtgatgat aacagacatg aatttggtac aggtttcctt gttcataaat       600
     atctgaaaca tctggtgatg aattttacac ccattaatcc acggctatca gtgattagaa       660
     ttaaaggaag attctttaat tatagtataa ttaatggaca tgcaccaaca gaagaatcta       720
     ttgaagacct aaaagatgat ttttatgatg cccttgaaaa agcttacgat aagtgtccaa       780
     ggaatgacat caagatcgtg ctgggtgatt ttaatgcaca acttggaaga gaagacatgt       840
     tccagcctgt aattggagcc catagtaaac atggatccac taatgataat ggaataagat       900
     tgatcctctt cgcagcctcc cggaatatga tagtgggatc taccagcttt ccccataagg       960
     agatacacaa gggcacatgg aagtcacctg atggcagaac cattaatcaa attgatcatg      1020
     tactgataga ccagaggcat aaatctaact tgttggatgt tcgaaccttt cgtggcccta      1080
     atgtggattc agatcatttt cttgtaatgg ccaagataag agcaaggata tcaaatgctc      1140
     agaaagaaag aaattaggaa agaacggtac aatattgcag catgcaatta acagaaactt      1200
     gcgaatcata ctgtcagaaa gtttctcagg tcctagaaca agaaaaggaa caatgcaaga      1260
     cagtaatgac atagaacaaa aatggctgct ataaaaagag ctatagacat ttcagctaag      1320
     gaaacactag ggatagagag agaatcaata aggcccacat ggtttgatga agagtgtaag      1380
     agagtgactg aagaaaagaa cactgcatat caaaagacat tacaggcgaa ctgcacaaga      1440
     agcttgttgg aggattatcg agagaaaagg agaatcgaaa agatgacaca tcgccgaaag      1500
     aaaagggaat ggactaaggc tgaaatagaa tgtatggaat tgtcaaagaa gaaaatgaaa      1560
     caagggattc tttgaaaagt aaacaatgct agaagacaat ttgctccata accagcttga      1620
     ttagagatga agaaggaaac ataataagtg aagtaaacag actctggaaa gatggcgaag      1680
     atactttaat gacctgcgaa tcgagagatg agcaagcaga ggatatctct aatgattgtg      1740
     agcaagggtt ggatgatgaa cagccactgg atggcccagg gttagagatt aaaaaagctt      1800
     aaggaaactg aagaataaca aggctcccgg cactgacagt attcctgcag aattgctaaa      1860
     atatggagga gcaacattag agcagtccct gtttgaactt atcactctca tatgggaaca      1920
     ggaaaggata ccaaatgaat ggaatgaagg aatattatgt cccatacata aaaagggcga      1980
     ccgaatggag tgcagaaacc accgtggaat caccctcctg aacctgggct acaaggtgtt      2040
     atctaatatt atttttgatc ggctactccc acaggtggat aaagaaattg gaatgtacca      2100
     aagtggattt cgacgaggaa ggtcaacaat agaccagatt ttcaacctgc gccaaatttt      2160
     ggagaaaact gttgaatata gaattggaac acatcacctc tttattgact ttaaggctgc      2220
     atacgacagc ataaatagaa accagttgtt tcatgcctta caggagatgg ggatacatgg      2280
     aaagctcctg agaatggtta aaatgattgt ctgacgtaag aagcgcattg agttcaagga      2340
     aattactcag accccctgga aataaaaaat gggctacgtc aaggagatgc attagcatgc      2400
     ttattattta atgtagcwct cgagaaggtg atcagggaag caggcctaca gaccaggggt      2460
     accatcttct acaagtcggt gcagatttta gcatatgcag atgatataga catcatagca      2520
     cggacagtac cagcactgaa agaagctttc acagccttaa gtcaagcaag taagaaaatg      2580
     ggtcttatga ttaatgaaga taaaactaaa tacatggcct gtgggaaagc atatcaaccc      2640
     aatatgccgt caactttcag tgtgaatgga tacacatttg aaagagttga taccttcaag      2700
     tatcttggtt caacagtcac ttgctttaat gacacctcaa cagaaattaa gatcagactg      2760
     atatcagcaa acaaggcata tttcgccttg agtaatttat tccagtcaag actcctcagc      2820
     cgcccaacaa aattcactat ttataaaact ctagttagac ctgttctcac ttatgcttca      2880
     gaaacatggc ccttgacgga aactgatgca aggctgctcg acggatttga gaggaaagtt      2940
     ttgaggagaa taattggccc tgtgtatgat ggagaacaat ggaggaaagg tacaatgcag      3000
     aattgtacac tatatatgcc gatgctcctg taacaaatat catacgatca ggaaggataa      3060
     gatgggcagg tcatgtggca agaatggagg agtctgaggt gacaaagaag attctctttg      3120
     gaaatccagg tggccaaaga ggwcgaggta gacctcgagc aagatggctg gatggagtgg      3180
     aagaagacct acgaaagcta ggatgcagaa actggaggag ggtagcatat gaccgtgatg      3240
     gatggcggaa gctcgttggg aaggccaagg ttcaccctgg actgtagcgc cacaaaagaa      3300
     gaagaag                                                                3307
//
ID   RTE-57_LMi  repbase;    DNA;    INV; 1715 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-57_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1715
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 157-157 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1715 BP; 642 A; 339 C; 376 G; 358 T; 0 other;
     atttgtcggt gatatggcaa tcaaggacaa gcaagaaaac tgatcacaaa tcaagaagac        60
     caagtgcaga ggtggaaaga cattttgaga acattctgaa ccacgaaatt acagatgata       120
     atgtggctca actgaatatg gatgcggaag gactcccaca agatatctca attaacgtag       180
     aaccaccatc caaagaggaa atcgccaaag cagtccaaca aataaaaaat ggaaaagctc       240
     caggcctgga caacatcaat ccagagttac tcaaagcaga tccctctata acagcagaaa       300
     ttttgcatcc actcctgaca gccatatggc tgaatgaaaa agtaccaaat gattggaaca       360
     gaggtctgct cgtcaagctc cctaagaaag gagacctatc ggtttgtgat aactggagag       420
     gcatcaccct actgtcaatc ccaagcaaga tcctctcgcg aataatccta aataggataa       480
     aagcacatat agacaacaaa ataagaagag aacaagcagg attcagggat ggtcgctctt       540
     gcattgacca gataaacacc ttgagaataa tagctgaaca ttcatatgaa taccagtcac       600
     cgctttacat gctgtttgta gactttgaaa ggccttcgac agtataatta gaacaaaaat       660
     atggagctct ctgcaaactt ttggaattcc caacaaaata attgctcttg tcaaatgcat       720
     gtatgaaaac tacacgtgcc aggttcaaca tcaaggtctg atttcagatc caatagcagt       780
     gaaaacagga gttaagcaag gctgcatgct ctcacccata ctatttaaca tggtactgaa       840
     tcttgtaatg gcgcaatcaa tggacaaagt gagaggaata aaatggagaa atggaacaca       900
     tctagaagac ctagattttg cagatgacct ttgccttcta tcccacagcc tcaaggacat       960
     gaaggaaaaa ctagaagatc tgaaatctgc agcgaaggaa gtcggtttga aaattaatgc      1020
     ccaaaaaacg aaagacatgc gggcaaatga taacaccacc gcagagctta agcttgggag      1080
     ccaaataatc gaaagggtgg ataagttttg ctaccttgga agcatgatta caccatatgg      1140
     aggtgcaaca gaggacatta acagccgcat caacaaagcc aaaggcgctt ttacaactct      1200
     ccgctctatc tggagatcaa aggaaataac attgaggacc aaattacgga tatatgaaag      1260
     taatataaaa tctgtgcttc tatatggatg tgaaacatgg agagtgacaa agcagctaat      1320
     acataaactg cagacattca acaacaaatg tctgaggaac atcctgggga tacggtggcc      1380
     aaatgtcatc tctaacgaaa cactttggga aagaacaagc cagaagccaa ttgagctgca      1440
     aataagaagc aggaagtgga gatggttagg acatacactc agaagacatg atgaacatat      1500
     tgcgaaggaa gcacttcact ggattccgca agggcgacga agacgaggca ggcccaaagt      1560
     gacgtggaga cgatcagttg aagcagaagg tcaacagcaa ggaatcggat gggaagaagt      1620
     ggaaatactg gcacaagaca gaacaagatg gcgatccttt gttgcagccc tatgctccac      1680
     ataaggagtt aaaggaataa ataataaata ataaa                                 1715
//
ID   RTE-58_LMi  repbase;    DNA;    INV; 3284 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-58_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3284
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 158-158 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 3284 BP; 1253 A; 415 C; 915 G; 701 T; 0 other;
     gcccatcctc cccctttcct atcccaaacc tgtcctcacc agtccttttc ttgtcatttc        60
     ctgtaacatg tataagacct caatggcagc gacagcggag gaagagtctt tcagaatggt       120
     gaagctggcg gaagaggcac ttttctcttt gggtacaaaa agagtacaag tagcgactgt       180
     accccagagg ggcggctaca gacagcgtct gactcatagt gagcggctga tttaggctgg       240
     gcaacctact gcctatgtgg aaagtaacgg gaaactacca cattacattc ccaagtagta       300
     catggtatgt ctctccatgt gaaagattcc ggagttaaaa cttcccctca gtcggatctc       360
     cgggagggga acacattgag agtagacata tttgaaagga agaaagggac aatgaaggaa       420
     ggaaagataa ggattggaac atggaatgtg aggacgctac tgcaagcagg aaagctagag       480
     aatgcgaaac aggagatgaa aaggaacaga ctagatgccc ttggtttgtg tgaaatgaga       540
     tggggagaga atggggagat agatagtgga gattataagc tcttttactc aggggaaatc       600
     aagagtggtg aaaacggagt aggaatattg atagggcaaa agctgaaaaa taaggtaatg       660
     aaggtacaat atattgatgg aagactgatg atgatacgac tgaagggtag ttcaaaagat       720
     ttggtgttaa tacaggtata tatgccaacc agccagcata gagatgaaga agtggaagaa       780
     tattatgaga aaatacaaga actcatcgag aaagaaaata gaaatgcctg cattatcatc       840
     atgggagact ggaatgcagt ggtgggtgaa ggaagagatg aagatacagt aggaaaattt       900
     ggattaggaa taagaaatga gagaggtgaa cgactaatta gtttctgtaa agaaaattca       960
     ttagcagtgg gtaacacatt atttgaacac cacaaaagaa gacgatacac atggatatca      1020
     aatttgaata gggaaagata tcagttggac tacatcctaa tacaaaaaag gtttaggaac      1080
     tgtttgaaga atgctaaagc ttatccagga gcggatataa attcagacca caacctagta      1140
     gtgggagaaa tacaagtgaa gttgaaaaaa gtctggagag gtaaagcaaa agaaagatta      1200
     aacatagaaa gactcaaaga ggtaggaaag acatcagatt tggaaaacag atttatggaa      1260
     aaatgggaaa gaggtggtga tgatgaaagt gttaatgaca aatggataaa aatgagggaa      1320
     ggactcatgg actctgccaa agaagtacta ggaattagag tatcccaaag tatcaggaaa      1380
     gaatggataa cagaaaacat gttgaaaaag atggaagagc ggagaaagtg gaaaaatgta      1440
     gaaactgaag aaggcaaaaa gaggtacagg aaactgaata atgaattaag aagacaaact      1500
     gaagaagcaa gagaaatatg gatgaaaaga aatgtcgaaa tagagaaaga gggaaagtat      1560
     gaaatggtgt atagactggc tagcgatata gtttttgaac gtaaaagaaa gaagaataac      1620
     atggaaatag aaagagcgga tggtactcta gcagaagaac ctcaggaggt tttgaacaga      1680
     tggcaagaat atattgaatg tctgtataag ggggatgaaa tacaaagcga aagtaaggtt      1740
     gaagaggagc aatatgtgcc ggaagatgga aagggataca ccatattgga agcagaagta      1800
     gaaaaggcgc tgaaggagat gaaaaatagg aaggcatgtg gaattgatga tataccagca      1860
     gaactgctga agagtctggg caacaaggct agaaaagaac tagtctacct ctgtaatgag      1920
     atatatgaca aaggggaatg gcctgaggac ttccttgcaa cagttatggt accaatagag      1980
     aaaaagagaa acactaaaaa atgtgaagag cataggacca tcagtctaat ttctcatgca      2040
     gctaaagtgt tgctgagagt gttgaataga aggctatatg gcaagatgga tggagggatt      2100
     gcagaggaac agttcggatt tagaagagga aaaggtacaa gagatgctat tggcctgtta      2160
     agaactatag gggaaagata tatggaaaaa tgcagagaaa tctttgctgt ttttatagac      2220
     ttagaaaagg cttttgatag agttcagtgg aagaagctga tggatatttt gaagaggaaa      2280
     ggagtagact ggaaagagag acgacttata cagaatctat atttacacca gaaagtgagg      2340
     ataaggattg gaaatgaaat atcagaagga accagaattg ggcgaggtgt tagacaaggt      2400
     tgttgccttt ccccattgtt gtttaacgta taccttgaag agattattgc gaaaggctta      2460
     gatgggaaaa gaggaatacg tattggtgga aagagaatag aatgcataag atttgctgat      2520
     gacatggtat tagtggcaga aagtgagcgg acagcgaaca acatgctgaa agatctaaat      2580
     gatgcttgtg tggaatatgg gatgaaaata aacacagcaa aaacaaagag tatggtcatc      2640
     agtacaagac acagagtggc caatattaaa ataggacaaa ctaccattag ccaagtaagt      2700
     gcatttaaat atcttggaag cacaataacc gaagacttaa gatgccacca ggaggtgaaa      2760
     actcgaattg ccatagcgaa ggaggcattc aacagaaaga ggagactgtt atgtggcaaa      2820
     ttagataagg gtctaaggaa aaggcttggc aaatgtttcg tctggagtgt ggcactatat      2880
     ggtgcagaaa catggacgct gagacgagag gatgaaaaaa ggttagaagc atttgagatg      2940
     tggatgtgga ggagaatgga gaggataagc tggacagaaa gagtgagtaa tgaaagagtg      3000
     ttggaaatgg ttggggagag aagatgtctg ctgaaggtta taagagaaag gaaaaagaac      3060
     tggttgggac attcgttgag aagggagtgc atactaacag atgctttgga aggactggtt      3120
     tgtgggaaaa gactgagagg tagaaggcga tacaagatga cagatgacat aaagggaaga      3180
     ggaaattatg cggacctgaa gaggacggca gaagaccgga cagcgtggag aactaccatg      3240
     tgaaaacctg ccttttggca gaacactgat gatgatgatg atga                       3284
//
ID   RTE-59_LMi  repbase;    DNA;    INV; 3445 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-59_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3445
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 303-303 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(370..1683,1431..3392)
FT                 /product="RTE-59_LMi_1p"
FT                 /translation="MKRRVGASQKPSRQREYFTWEHSTHTLLKPGKLKQLT
FT                 NTMDKFNIKIMAIQETRFADENHFDSENYRIYKGKPAITIPGSNLKLFGTG
FT                 FVVHKSILDSVIDFTSKSEKISTLTIQSGNKAYTLISAHAPTNNYNKKNPE
FT                 MIEEFWEDLEETTNKIPKNHVKVLLGDFNAQLGKERKFRDTTGKHTAHKRT
FT                 NKNGENLINFCRNFELKIMSTQFQKPHRKLVTWKSPNNALGEFQIDHVAIS
FT                 MKNAREIMNVRTRKGVFDSDHHLLQIKAKFIPNRQIKRTNRPFRTDPEYLQ
FT                 LNKKEIIEEITKINSNNWTELSEKMRELIKLGQPPRKRKHRWWNMTCDRAI
FT                 EDRIQAWKKFNSHRTQEKWEEFNRIQKNTSKIIRREKRSYENSRLKEIEED
FT                 FTRNNTRNFYRIFRENMTGYQPPSLCFKRQDGTLETNRRKTVKYQPQNTGK
FT                 MGRIQQDTEKYFENNSQRKKKLRKQQVERDRRGLHQKQHTKFLQNIPRKYD
FT                 RISATKFMLQKTRWNTGDKSKKNCEILARYFDTLLNCDKPKQRLQFTKAEP
FT                 NRDSEPPTHEEIVKIIKSLKNNRAPGEDGLIAEIWKLDHENITPKIHRIIK
FT                 NIWETEKVPEEWKSALIHPLHKKGDKADPNNYRGISLLPVTYKILSKALLN
FT                 RLEPQIDPHIGEYQAGFRKGRSCSEQIWCLRTILTTRKSRNTTITFVDFKK
FT                 AYDSIDRETLFSTLEEMKVDNKTRKLIQETLTNTKSKVKFMGEISEPFDIK
FT                 TGVRQGDGLSPILFNAVLEKIIRTWDKGVNGVKMGRHKNRTINIKCLAFAD
FT                 DIAIITNNRKEAKEALETLHEIAARTGLQISYEKTQYMDTKSTDRNPLVTK
FT                 YGEIAQVECFKYLGEIIQKTGLNSTANEERVAKLQKAYRLTWNHYNKRSIS
FT                 VNAKLRHYKTVVLPEALYAAETTVIRGRTKIKEMEKQERKILRKIYGPVQR
FT                 QGIWIKRPTKELYKQTETITDNIRKRRAKFYGHIYRMNENRLIKKIFNIVM
FT                 SNTIKTNWAKETMEDLKKLNISTEEIINREKYREKIRKQKFEETPKEKKPG
FT                 KKWTEERKKKHSEYMRGFWEEKRKRQKSAMKIDCV"
XX
SQ   Sequence 3445 BP; 1449 A; 651 C; 696 G; 649 T; 0 other;
     cgcagtgatg aggaaggagg aggggggtaa cacctcgtta aacaacctgg gtccatctgg        60
     ctccatggta gcaccctgtg agggcccctg cctagggtta caggtgaacc catccagaca       120
     cgtctgtgtg gtagccaccg gtactctggt cagcgtctgt tggctctgtg agctcggctg       180
     tgattgaatc ttctggaact cgaaactcca gtcgaaatta tgtgagatcc tttgtgattt       240
     caccaccaaa acctcaacac aaaccaataa tcatgacaga acaatgggaa agaatccact       300
     accctgggcc ccagtcagta agactgggta atagacctga tcatcggatt ccaggggatc       360
     aggcatgtca tgaagagaag agtcggagct tctcaaaaac cctcaagaca aagagaatat       420
     tttacatggg aacactcaac acacacacta ctgaagccag gtaaattgaa acaattaaca       480
     aacacgatgg ataaattcaa catcaaaatt atggcaattc aggaaacacg attcgcagat       540
     gagaaccact ttgattcaga aaattacaga atatataagg ggaaaccagc cataaccatt       600
     ccaggaagta atctcaaact cttcggaaca ggatttgtag tgcataaatc gatactggac       660
     tctgtaatag atttcacttc aaaatcagaa aaaatttcaa ccctcacgat acaatctgga       720
     aacaaagcct atacactaat cagtgcacat gcccccacaa ataattataa caagaagaac       780
     ccagagatga tagaagaatt ctgggaagat ctggaagaaa ctaccaacaa aattccaaag       840
     aatcacgtta aagtgttact aggggatttc aatgcccagt taggcaagga aagaaaattc       900
     cgagacacga cagggaaaca cacggcccac aagaggacaa acaaaaatgg agagaacttg       960
     ataaatttct gcaggaattt tgaactgaaa atcatgtcaa cacaattcca gaaaccacac      1020
     agaaaactag taacttggaa atcccccaac aatgctctag gagaatttca gatagaccac      1080
     gtagcaatat ccatgaaaaa tgccagagaa ataatgaatg taagaactag gaaaggagtt      1140
     ttcgattctg atcatcacct tctccaaatc aaagcaaaat ttatacccaa cagacaaata      1200
     aagagaacca acagaccttt cagaacagat ccagagtacc tacaactaaa caagaaagaa      1260
     ataatagaag aaattacgaa aatcaacagc aacaactgga cagaactgtc agaaaaaatg      1320
     agagaactga taaaattggg gcagccaccg aggaaaagga aacaccgatg gtggaacatg      1380
     acatgtgaca gagccataga agacagaata caagcctgga aaaaatttaa cagccacaga      1440
     acacaggaaa aatgggaaga attcaacagg atacagaaaa atacttcgaa aataattcgc      1500
     agagaaaaaa gaagttacga aaacagcagg ttgaaagaga tagaagagga cttcaccaga      1560
     aacaacacac gaaattttta cagaatattc cgagaaaata tgacaggata tcagccacca      1620
     agtttatgct tcaaaagaca agatggaaca ctggagacaa atcgaagaaa aactgtgaaa      1680
     tattagctcg atactttgac acattactaa actgcgataa accaaaacag agattacagt      1740
     ttacaaaagc agaacccaac cgagactccg aacccccaac acatgaagaa atagtgaaaa      1800
     taataaaatc attgaaaaat aacagagcac caggagaaga tggactgatt gcagaaatct      1860
     ggaaattaga ccatgaaaac attacaccca aaatacacag aataatcaaa aacatctggg      1920
     aaacagaaaa ggtgccagaa gaatggaagt cagccctaat acaccccctt cacaagaaag      1980
     gagacaaagc agaccctaat aactatagag gaatttcgtt actgcctgtg acatacaaaa      2040
     ttctatccaa agctctgtta aatcgcctag aacctcagat agatccacat atcggagagt      2100
     accaagccgg gttcaggaag ggaagatcgt gcagtgagca gatctggtgt ctgagaacaa      2160
     tattaacaac gagaaagtcc agaaacacca caataacatt tgttgatttc aagaaggcct      2220
     acgattccat agacagagaa acacttttca gtacactaga agaaatgaag gtagacaaca      2280
     agaccagaaa actaatccag gaaacattaa caaatacaaa atctaaggtg aagttcatgg      2340
     gggagatctc agaaccattc gacatcaaga caggagtgag acagggagat ggcctgtcac      2400
     ccattttatt taacgcagtt ttagagaaaa taatcaggac atgggacaaa ggagtcaatg      2460
     gggtaaagat gggaagacac aaaaacagaa ccatcaacat aaaatgtctg gcttttgccg      2520
     atgatatagc catcataacg aataacagaa aagaagccaa agaagcccta gagacactac      2580
     atgaaatcgc agccagaaca ggactacaaa tttcgtatga aaaaacccag tacatggaca      2640
     cgaaatccac agacagaaac ccattggtaa caaagtatgg agagatagca caagtagaat      2700
     gtttcaaata cctgggagag attatacaga aaacaggact aaattcgaca gccaatgaag      2760
     aaagagttgc aaagctacaa aaagcttaca gacttacatg gaaccattac aataaaagaa      2820
     gtatctctgt taatgccaaa ttaagacatt acaaaacagt agtcttacca gaagccttgt      2880
     atgccgcaga aacgacagta atcagaggaa gaacgaaaat caaggaaatg gaaaagcaag      2940
     agaggaaaat tctaaggaag atctatgggc cagttcagag acaggggatc tggataaaga      3000
     gaccgacaaa agaactgtac aaacagacag agacaattac agacaacatc agaaaaagaa      3060
     gggcaaagtt ctatggccac atttatagga tgaatgaaaa taggctgatc aagaagattt      3120
     ttaacattgt gatgagtaat acgataaaaa ctaactgggc aaaggaaacc atggaagacc      3180
     tcaagaaact aaatatctct acagaagaaa taataaacag agaaaaatac agagaaaaaa      3240
     tcaggaaaca gaaattcgaa gaaacaccaa aagagaagaa accaggaaag aagtggacag      3300
     aagagaggaa gaagaaacac agtgaatata tgagaggttt ttgggaagag aaaagaaaga      3360
     gacaaaaaag tgccatgaaa attgattgtg tttaaacgct ctcctaaatg gggaattaac      3420
     gataataata ataataataa taata                                            3445
//
ID   RTE-5_BM    repbase;    DNA;    INV; 3040 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3040
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1057-1057 (2010).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           692..2554
FT                 /product="RTE-5_BM_1p"
FT                 /translation="MTFGAWNVRTLLDRDGNACPERKTAIVARELHRYNVD
FT                 VAALSETHLADEGELVEVGAGYTFFWKGTAASETRHSGVGFAIKNHLVKRL
FT                 EEYPVHISDRVTTLRVHLDKDNYLNVISVYAPTLDKSDDIKDKFYGEVTLC
FT                 LDSINAREQVLLLGDFNARVGRDYEAWPGVLGRHGVGNMNSNGQLLLSLCA
FT                 QYGLAITNTMFRLAAKYKTTWMHPRSKHWHLIDYAIVRQRDFSQVQITRVM
FT                 RGAHCWSDHRLIVTKLRLRLRRPRRSPMKKLASLDIEKLRDPEVRKNYAEA
FT                 LSKKLLSVNETGDVDADWGTLSSHIMDTASIALGRKSRRNEDWFDGNDGVL
FT                 RAALDKHRDLLRQHRRRKGSVAAVKASDLELRKLSRQIKDKWWQDKTSHMQ
FT                 WLTDTNQLGEFYSEARKLMGTSNHAKVPLKSLDSRHLLTSKEDVLKRWAEH
FT                 FNALLNVDRSADLQSIALMPQLPLALELDEPLLRDEVVAAIRQQKDKRAAG
FT                 ADLIPGELIKYGGEELYTLVWELFVRMWEEERVPDSFKVSRITALYKNKGD
FT                 RSDCNSYRGISLLSAPGKVFARVLLNRLKDLSEKILPETQFGFRPDRGTCE
FT                 AIFSVRQLQEKSREQGRQLYLWH"
XX
SQ   Sequence 3040 BP; 799 A; 754 C; 808 G; 677 T; 2 other;
     ggcagggggc gctcaaatat actatctgtc cggtagtata ttactgagtg cacgggcacg        60
     cgatcccgcc ttccctgagc tgctatagac cacaacctac tcttccgtgg ctacagtatc       120
     ctgtccttcc tactcctaac tccctcttct cctcatctct ttaataccca tccctacacg       180
     cggctccctc ccgcttaaca cacaaagtct gacttggcga ggaaggcaac acaacgcaga       240
     tatgcaacgt gacttggcgg actcggcggg tcagcaaggc aaggtggatg gcctagggcg       300
     acggtggagg gcatatagtc accgtcggcc agacacaaca tccaacccct tcttcagtcg       360
     tagcggtttc ccgttccact gatccaagaa gggataggac gagggtgtgc gcctgcgtga       420
     gcgcaaacgt ttgcgcacct aaatatatcc tgcgtatctg accgcttccg ttaatggact       480
     ccgaacaacg gcgtgggttc ggcagcaccc gagatgacaa agcagccctg tttagggagg       540
     cactgctttc cccgctcagc cggggagggg gctagaaaag gtgccctaaa aattgctcgt       600
     cccatttgat aagtggtagt aaccgcggct gccactgcat cagtcaaatc gtggtcgacg       660
     ttgcaaaaga aatattataa aaacatctat catgacattt ggcgcgtgga acgtgagaac       720
     gcttcttgat cgagatggca acgcctgccc tgaacgcaag accgccatag tagctcggga       780
     acttcatcgc tacaacgtag atgtggctgc tctcagcgaa acacaccttg ccgatgaagg       840
     agagctggtg gaagtaggtg ctggttatac cttcttctgg aaaggtaccg ctgcctctga       900
     aacgcgacac tcaggcgtag gatttgccat caagaaccac ttagtaaagc gattagagga       960
     gtaccctgta catatctcgg accgcgttac cacactgcgn gttcacctgg acaaagacaa      1020
     ttaccttaat gtcatcagtg tctatgctcc aacgcttgac aagtctgatg acatcaagga      1080
     caaattctat ggggaagtga ctctttgcct tgacagcata aacgccagag agcaggtact      1140
     attgctgggc gacttcaatg ccagggttgg tcgggactat gaggcttggc ctggagttct      1200
     gggtagacac ggagtcggca acatgaacag caatggtcag ttgctgctca gtctttgtgc      1260
     tcaatacggt ctagcaatta cgaacactat gtttagactt gccgctaagt acaagacaac      1320
     atggatgcac ccaagatcca agcactggca tttgatcgac tatgctatcg taaggcaaag      1380
     agatttcagc caagtgcaga tcacccgtgt tatgcgtggt gcgcactgct ggtctgacca      1440
     ccgacttatt gtcactaagc tacgactccg cctccgccgc ccgcgtagat ctcctatgaa      1500
     aaagcttgcg tctttggaca tagagaagct aagagatcct gaggtgagga agaactatgc      1560
     tgaagcgttg tctaaaaagc tattatcagt taatgagaca ggcgatgttg atgctgactg      1620
     gggaacttta tcatctcata tcatggatac cgcttcaatt gcactgggta ggaaaagccg      1680
     tcgcaatgaa gactggtttg atggaaatga tggagttttg cgggcggcac tcgacaaaca      1740
     ccgtgatctc ctgcgacagc acagaagacg taaaggaagc gtggcggcgg tcaaagctag      1800
     tgacctagaa ttgcgcaaac tgtcacgaca aataaaagac aagtggtggc aggacaaaac      1860
     tagtcatatg caatggctca ctgacacaaa ccagctcggt gagttttata gcgaggcgcg      1920
     taagctgatg ggtacatcca accatgcaaa ggttccttta aagtctctag atagtaggca      1980
     cctcttaaca agcaaggagg atgtactaaa gcgctgggca gagcacttca atgccctgct      2040
     gaatgtggat cgatcagcag atctgcaaag catcgcttta atgcctcaac tccctcttgc      2100
     ccttgagctg gacgagcctc tattgcgtga cgaggttgtt gctgccatca gacagcaaaa      2160
     agataaaagg gcggctggcg ctgatcttat accaggagag ctgatcaagt acggcggaga      2220
     ggagttgtac acgttggtgt gggagctgtt tgttcgtatg tgggaggaag agcgcgttcc      2280
     ggatagcttt aaagtatcgc gcataactgc tctctataag aacaaaggcg accgatctga      2340
     ctgcaactcc taccgcggta tttcgctcct atcggccccc ggaaaggtct ttgctagagt      2400
     actcttaaac cgcctaaagg acttatctga aaagatcctg cccgaaactc agtttggctt      2460
     ccgcccggac cgaggcacat gcgaagcgat cttctctgtg cgtcaactac aagaaaagag      2520
     cagagagcag ggtcgtcagc tgtacctctg gcattgaggc ctatttaatg cgtcggcagc      2580
     ttcgntggtg cggtcatgta tcacgcatga cggaggaaag agtggcgaag cgcatcttct      2640
     tctctgaatt gcaggacggc aagcgaaagc atggcggaca actcctgcgg tacaaggatg      2700
     tcgtgaaacg acacatgaag agatgtgata tagagccctc tcaatgggag cgcttggcag      2760
     cacagcggcc agaatggcgc aggatggtga acggcaaagt acgcgagttc gaggatcagc      2820
     gtaaagctga ccttgattac aaacgcgacc agttgaaggc ccgcccacct gctgccataa      2880
     cctataatta tgagaacggc gtgcttacgt gccctcaatg cgcaaggagt tttgccgcga      2940
     agataggcta tataagccat cttcgagcgc acgagcgcca aatcgacgga taggagtcaa      3000
     agtggtcgcc atggccgaaa tcggtcggat gaatcatcat                            3040
//
ID   RTE-5_DPl   repbase;    DNA;    INV; 2915 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 23.01, Created)
DT   31-DEC-2011 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-2915
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 129-129 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           415..2913
FT                 /product="RTE-5_DPl_1p"
FT                 /translation="MYEDISRAIHTSKTHFNVVMGDFNAKLGKRSAYELKV
FT                 GDFGHGQRNLRGQRLADFLEKEGLFVMNSFFQKPSQRKWTWMSPDGSTRNE
FT                 IDFIMTDKRRIFNDVSVIHRVKTGSDHRIVRGTLNINVKLERSRLMKSTLR
FT                 PTRAQIENPESFQLELSNRFDCLEXHASVDEINNRFVETVHTVGSQFXKTH
FT                 RTTRTQRLSDCTLKLIAERRLHRLQSPDDAESHGQLNRRIWKSLRHDIRNF
FT                 NTARIKDTIERNKGSKVFARDMSIGQSQVTKLKRDDGSVVSTKAEVLREVE
FT                 NFYGRLYDSVAKPVSSTATDPRAKLTRHFTEDIPDISLFEIEMALKQLKNN
FT                 KAPGEDGITSELLKAGGSPVLKVLQKLFNSVLFEGTTPEAWNKSVVVLFFK
FT                 KGDNTLLKNYRPISLLSHAYKLFSRVIVNRLERXFDDFQPPEQAGFRKGYS
FT                 TVDHIHTLRQVIQKTEEYNLPLCLAFVDYEKAFDSVETWAVLESLQRCHID
FT                 YRYIEVLKYLYRNATMSVRLQKQSSRAIPLKRGVRQGDVISPKLFTAALED
FT                 AFKLLEWEGLGININGEYITHLRFADDIVVMAKSMEELSTMLEGLNRVSQR
FT                 VGLKMNADKTKLMSNVHVAPTPVMVENSVLEVVDAYVYLGQTVQLGRSNFE
FT                 KEVNRRIQLGWAAFGKLRNVFSSKIPQCLKTKVFNQCVLPVMTYGSETWCF
FT                 TKGLMNRLRVAQRAMALHISGSLAMLGVSLRDRIRNDEIRRRTRVTDIAKR
FT                 ISSLKWQWAGHIARRTDGRWGRKVLEWRPRIGKRSVGRPPTRWTDDLVKAA
FT                 GSRWMQAASDRTAWKSTREAYVQRWNMAEER"
XX
SQ   Sequence 2915 BP; 806 A; 666 C; 778 G; 662 T; 3 other;
     ggccccgagt ccccggcagc cccactagcc cggactacgg tagcggtctc ggtaacggtg        60
     gggctagggg tgcgaagaat ccccggcaga tgcccggcta ccaattcaaa cgaccactgg       120
     ccctggcaac gcacaacata cgcactttga ggaatgacga gaagattgtt gagctggagg       180
     aagaattgag taaattacgg tgggatattt tggggttgtc tgaagtccgt agagagggcc       240
     aggatacgat aaccctgaaa tctggtaatc tgctcttcta ccgggagggt gaccaacaat       300
     cccaaggtgg tgtcggattt ctcgtccaca aaaggtactc ataagaggta ctcattgaag       360
     gtcgttcagg tatatgcgcc gacttcgtca cacccagatg aggaagtaga gtctatgtat       420
     gaggacatta gtagggccat acatactagc aaaactcact tcaatgttgt tatgggagac       480
     tttaatgcga agctaggcaa gagaagtgct tacgagttga aggtggggga cttcgggcat       540
     gggcaacgga accttagagg acagaggctg gcggattttc tggagaaaga aggactcttt       600
     gtgatgaatt ctttcttcca gaagccgtct caacgaaaat ggacttggat gagccccgat       660
     ggttccacga gaaatgagat agacttcatt atgaccgata agagacgaat attcaatgat       720
     gtctcagtga ttcacagggt gaaaaccggt agtgatcacc gaattgtgag aggcacgttg       780
     aatataaacg ttaaactgga acggtcccgt ttaatgaagt ccacgctccg acctactcgc       840
     gctcagatcg aaaaccccga aagctttcaa ctcgagcttt caaatcgctt tgattgcctg       900
     gaagntcacg catcggtgga cgagatcaac aacaggttcg tagaaaccgt ccatacggtt       960
     gggtctcagt tcttnaagac tcaccgtacc actagaactc agaggctctc cgactgcacc      1020
     cttaaactta ttgctgaacg acgcttgcat agattgcagt ctcctgatga tgctgagtcg      1080
     catggccagc ttaatagacg tatctggaaa tccttgcgac acgacattcg taacttcaat      1140
     actgctcgta tcaaagatac aattgagcga aacaaaggct ccaaagtgtt cgcaagggat      1200
     atgtctattg ggcaaagcca ggtgacaaag ttgaagcggg atgatggcag cgtagtgtct      1260
     acaaaagcgg aagtcttaag ggaagttgag aacttctatg gacgactcta cgattcggtc      1320
     gcaaagcctg tttctagtac ggctacagac ccgagagcca aattgacccg acactttacc      1380
     gaggatatcc cggacatcag cctgtttgag attgagatgg ccctaaaaca gctaaagaac      1440
     aacaaggcac cgggtgagga cggaattact tctgaacttc tgaaagcggg tggatcaccg      1500
     gtacttaaag tccttcagaa gctcttcaat tctgtcttgt ttgaaggtac cacgcctgag      1560
     gcatggaaca agagcgtggt ggtgttgttc ttcaaaaaag gtgataacac cctattgaag      1620
     aactacagac ccatctcgct cttgagccac gcttacaagc tgttttctag ggtcattgta      1680
     aatcgtctcg aacgcagntt tgatgacttc cagcctcccg aacaagccgg gttccgaaaa      1740
     ggctatagta ccgtagacca catacatacg ctgcgccagg ttatacagaa gaccgaggag      1800
     tataacttgc cgctctgtct agcgtttgtg gactacgaaa aagcctttga ttcggtcgaa      1860
     acatgggcgg tactggagtc tctccagcga tgccatattg actatcggta tatcgaagtc      1920
     ctgaagtatt tgtatagaaa cgccactatg tcggtccgac ttcagaaaca gagttcgagg      1980
     gcgattccct taaaaagagg cgtaagacag ggagacgtca tatctccgaa actgttcacg      2040
     gccgctttgg aagacgcctt caagcttctg gaatgggaag gactgggcat caatattaac      2100
     ggcgaataca ttactcacct tcggttcgcc gacgatatcg tagtcatggc aaagtcgatg      2160
     gaggaactca gtacgatgct cgaaggcctc aatcgagtct cccaacgggt aggtcttaaa      2220
     atgaacgcgg acaagacgaa actcatgtct aatgtccatg tcgcacctac ccctgttatg      2280
     gttgagaact cggtacttga agttgttgac gcgtatgtat acctgggaca gacagtccag      2340
     ttaggaaggt ccaacttcga gaaagaggtc aatcgccgaa tccagctcgg atgggcagcg      2400
     ttcgggaagc tccgtaacgt cttttcgtcc aaaatacctc agtgccttaa gacgaaggta      2460
     tttaatcagt gtgtgttgcc agtgatgacg tacggatccg aaacgtggtg cttcaccaaa      2520
     gggcttatga acagactcag agtcgctcaa agagctatgg ctctccatat ctccggctct      2580
     ctagctatgc tcggagtttc tctacgggat cgaatcagaa atgatgagat acgtagaaga      2640
     acgagagtca ccgacatagc taaacggatt agctctttga agtggcagtg ggcaggtcat      2700
     atagcccgga gaacagatgg ccgttggggc cgaaaagtgc tcgaatggag accacggatc      2760
     ggaaagcgca gcgtcggacg tccaccaacg agatggacgg acgacttagt caaggccgcg      2820
     ggttcacggt ggatgcaggc cgcttccgac cgaaccgctt ggaagtcgac gagggaggcc      2880
     tatgtccagc ggtggaacat ggctgaagag agaaa                                 2915
//
ID   RTE-5_Hmel  repbase;    DNA;    INV; 3942 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3942
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           587..3871
FT                 /product="RTE-5_Hmel_1p"
FT                 /translation="KRWPKNCLSRFISSWLTAVTCSPSSCGRNRKQYISTV
FT                 TLNIATWNVRTLLDSDQSSCPERKTALIARELARYNIDIAAISETHLSDAG
FT                 ELREHLGGYTYYWYGKSSAERAASGVGFAVRNELARKLQELPKGINDRIIT
FT                 LRLQLTSKRYIHLISVYAPTLRAPEEEKLKFYLELGEVLSRIPSSDRILLL
FT                 GDFNARVGNDHVAWDGVLGRHGIGKCNANGFDLLTLCAKFGLSITNTYFRL
FT                 PEKFKTTWMHPRSKHWHLLDYVIARKRDLNEITITRVLRGAQGWTDHRLVR
FT                 SKLRLQLIAPRRSSRKIPTKLNYAKLVGNKELGMKLDNAFSSSMPAMESTT
FT                 SVEEKWRLYADNLYRCASQVIGKTERQNQDWFDDSEGTIKKLIEDHRRSLL
FT                 SCNISERRKASHCLKLKVRALRDKWWVDKATEMQLYADTNQYGRFFECLKT
FT                 VFGPRNKKIAPMYNKEKTQRLIDQRDIVARWAEHFYDVLNPTAQLADLVYI
FT                 DSLEILPTVETLAEPPTFDDFVAALSKMKNAKAPGMDGLPSEIYKYSGPNI
FT                 KCRLYQLILEIWECEIIPQDWKDASICKLYKGKGDIADCSSYRGISLLSVA
FT                 GKILACIIGHRLSQHVETILPETQCGFRRGRGTVDAIFVVRQVQEKSLEQY
FT                 RPLYMCFIDLEKAFDRISRDALWIVLEKAGCPAKLLNLIRQFHDNMMARVQ
FT                 HEDGFSDQFQVSSGVKQGCVLAPTLFSLYFAAVMRDAIRFCNSRIEISFRM
FT                 DRSVFDLSRLRAKRQVTNSSILDILYADDVCLMADSVESLQDYIDSLHASC
FT                 QRFGLVISTSKTQVLKQPPRGGCKDDSDITLHGTALEEVSNFKYLGSRIRN
FT                 DNTLASEIPARIACAAAAFGKLWTRVWXSHDLKLQTKILVYKSIVLPTLLY
FT                 AAETWCCYKADIKRLDTFHLKCLRSILGIKWQDRITNTEVLRRCGLSGIEA
FT                 MIMKQQLRWCGHVLRMDDDRLPKTVFFSELAHGKRKQGGQYLRYKDVLKRN
FT                 LVACKIPAECWEEKACLRPEWRRTVHKNVDEYEKQRLEDLDAKRQLRKTQL
FT                 KLSYTYTYNEAGQLYCASCKRIFKTKFGLASHIRAHQK"
XX
SQ   Sequence 3942 BP; 1123 A; 838 C; 959 G; 1018 T; 4 other;
     tatggaggcg tagggaattg acgaccccac cgcccaccgg tctagaccgg tgcaatcagt        60
     ctatgggaag cccaccatca tgaacaaaag cccgagccgg tgtaagaagc gagcaatgtc       120
     gataggcaac tgtatccggt tactacagcg gttcggcaag gtatttggtg atgtgcctta       180
     aagggcgcac gtcggggctc ttttagtgac gtgtggccaa tctcctgcaa cctcaatctc       240
     ctgccagtcg taccggtcac ccggcccatt ggcgtccgga tatcgaggat gagagagtgg       300
     atttgcacct gcgcaactgt ttgtccactt aaatatactc acgcgtaaat gacttcggca       360
     tgtttacctg gattttgata ttaagccctg cggcgatgga gagctgatgg tgaggagagg       420
     atatggtgta tccaaacctt agttggcatc tgcacgtagg cggtcttctg gtgatggtcg       480
     ctctgtattc cgattgagac agggaatccg ttcggcagct cagttgacga caaagcagcc       540
     ctatttaggg accgctctgc tttccccaat ccggggaggg gcctagaaaa ggtggcctaa       600
     aaattgtctg tctcgtttca taagcagttg gctaaccgcg gtcacctgtt caccatcttc       660
     atgcggtcga aatagaaaac agtacatatc aacagtaaca ctaaatattg caacgtggaa       720
     cgttcgaaca cttttggata gcgatcagag ttcgtgtcct gagagaaaaa ctgctttaat       780
     tgcgagagag ctggctagat ataatatcga cattgccgcc attagtgaga cgcatctcag       840
     tgacgccggg gagctgcgcg agcaccttgg aggctatact tactattggt acgggaaatc       900
     cagtgccgaa agagctgcta gtggagtggg ttttgcagtg cgtaacgagc ttgcacgtaa       960
     attacaggag ctaccaaaag gtatcaatga taggataatt acactaagac ttcaactgac      1020
     atctaagagg tacatccatc tgataagtgt ttatgccccc actttacgag ctccagaaga      1080
     agaaaaactg aaattttatt tagaacttgg cgaagtcctc tctagaatac cttcatctga      1140
     cagaatccta ctcttgggcg attttaatgc acgtgtcggg aatgatcatg ttgcctggga      1200
     tggtgtactt ggtcgtcatg gtattggaaa atgcaacgct aatgggtttg atcttcttac      1260
     cttatgcgca aaatttggct tgtcgattac gaacacttat tttcgtttgc ctgagaaatt      1320
     taagaccacg tggatgcatc caagatcgaa gcactggcat ctcttggact acgttatagc      1380
     acgtaagaga gacctcaacg agattaccat cactcgcgta ctgaggggtg cccagggatg      1440
     gactgatcat cgacttgttc ggtctaaact taggttacaa ttaatagcac cacgtcgaag      1500
     ctctcgtaag atcccaacga agctaaacta tgcaaagttg gtcggaaata aggaacttgg      1560
     aatgaaatta gacaatgctt tcagttccag tatgccagcg atggaaagta ctacgtctgt      1620
     tgaagagaag tggcggttat atgctgacaa tctctataga tgtgcttctc aagttatagg      1680
     gaaaaccgaa cggcaaaacc aagattggtt cgatgattcc gaaggtacca tcaagaaact      1740
     cattgaggac cacagacgta gtctcctttc atgtaacatc tctgaacgga ggaaagctag      1800
     tcactgccta aaattaaagg tgcgcgctct cagagacaaa tggtgggtgg ataaagcaac      1860
     agagatgcag ctatatgctg atacaaatca atacggtaga ttttttgaat gcttaaaaac      1920
     tgttttcggg ccccgaaata aaaagattgc cccgatgtac aacaaggaga agacccaacg      1980
     attaattgat cagcgtgaca tagtggctcg gtgggcggaa catttttatg atgttctgaa      2040
     tcctactgct caacttgctg acttggtata tatcgactcc ttagaaatcc tgccaacagt      2100
     ggagacctta gcggaacccc caacatttga tgactttgtt gccgcgctca gtaagatgaa      2160
     gaatgccaag gcacctggga tggatggttt gccatctgag atatataaat atagcggacc      2220
     aaatattaag tgcaggctat atcaactcat cctggagata tgggagtgtg aaattatacc      2280
     acaggactgg aaagatgctt ctatctgcaa rttatataag ggtaaaggag acattgctga      2340
     ctgcagctcg tacagaggta tctctcttct ctcagtagct ggtaagattt tggcttgtat      2400
     tattggccat cgactgtccc aacacgtcga aacgattctc ccagaaaccc aatgtggctt      2460
     ccgtcgcggt agaggtacgg ttgacgccat ctttgtcgtg agacaagtcc aagaaaaaag      2520
     tctggaacaa taccgtccgc tgtacatgtg ctttatcgat ttagaaaaag cctttgacag      2580
     gatatcgcgt gacgctcttt ggattgtcct tgagaaggca ggttgtccag caaagctttt      2640
     aaacttaata cgccagtttc atgacaatat gatggcaaga gtccagcacg aagatggctt      2700
     ttcggatcaa tttcargttt ccagtggtgt aaagcaaggc tgcgttttgg ctcccacttt      2760
     gttttcttta tactttgctg cagtaatgag ggatgcaata agattttgta atagcagaat      2820
     cgagataagc tttcggatgg ataggagcgt gtttgatctt tctcgactca gggccaagcg      2880
     tcaagtcacc aactcatcta ttttggacat cttgtatgcc gatgacgttt gtctcatggc      2940
     cgattcagtc gagtcgcttc aagactatat agactcgttg cacgcgtcct gtcaacgttt      3000
     cggcttggtt ataagcacta gtaagaccca agttttaaaa caacctcccc gtggtggctg      3060
     taaggatgat tctgacatta cactacatgg caccgcgtta gaggaggtct caaacttcaa      3120
     atatctaggt agccgaataa gaaacgataa cacyttggca tcagagatac ctgccagaat      3180
     agcgtgcgct gcagcagctt ttggtaaact gtggacgcgt gtttggaamt cccacgacct      3240
     taaattgcaa actaaaatat tagtttacaa atcaatagtt ctgcctacct tattgtacgc      3300
     tgctgagacg tggtgctgct ataaagcaga cattaagcgg ctcgacacat ttcaccttaa      3360
     gtgtctaagg tcaattttgg gaataaagtg gcaggaccgt attacaaaca ctgaagtttt      3420
     acgtcgatgt ggcttgtcgg gtatagaagc aatgattatg aagcagcagc taagatggtg      3480
     tggtcacgtt ttgcggatgg atgacgacag attgcctaag acagtctttt tctcagagct      3540
     tgcccatggg aaacgaaagc aaggcggaca gtatttgcgg tataaagacg tgctcaagcg      3600
     caaccttgtg gcttgcaaaa taccggcaga gtgctgggag gagaaagcat gtctcagacc      3660
     ggaatggcga cgcaccgtcc ataaaaatgt ggacgagtac gaaaaacagc gcttagaaga      3720
     tctcgatgcc aaacgccaat tacggaagac tcaactcaaa ctctcctaca cctatacata      3780
     taacgaggct ggccaactgt actgtgcgtc ctgtaagcgg attttcaaaa cgaaattcgg      3840
     cttagcgagt cacataagag cccaccaaaa ataaagtaaa ataaagttag acatgcaaga      3900
     agtcgccatc gccgaaatcg gtgtggataa taataataat aa                         3942
//
ID   RTE-5_LMi   repbase;    DNA;    INV; 3498 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3498
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3466-3466 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(521..655,631..2916,2920..3468)
FT                 /product="RTE-5_LMi_1p"
FT                 /translation="MNRSRMDKKDLTFSMKSDTRIGMWNVQTMWQAGRLAE
FT                 ISREMKRYNIQGDEKILGLSETRWTGFGEIKTQEGDTLLYSGREEEHRGGV
FT                 GLLITQKTKKSLIEWYPVSERIVVARFASRVRPITVVQCYAPTEAGSEEEK
FT                 EQFYGQLHRTLLKAKKKDIMVVMGDLNAKVGNDNQGVESIMGKHGIGNRND
FT                 NGERLIEFCSNHRLVIGGTIFPHKNCHKVTWVSPDHRTENQIDHFTISKTW
FT                 RTSLLDVRNRRGADVGSDHHLVIATLRLKIASTRNTQQKRRIKYNWDKLKN
FT                 KEVQQCFSLELSNRFQQLREDEEQDIERNWKSIESTYIDTCEKVLGKRERG
FT                 REEWITSETWEAVNQRKECKKRLNTARTQEEKVQARTEFNELNKMAKRRFR
FT                 RDKRAFINNLAAQAEMAAQKNDSKTLYDITKRLTGKCFRSEKPVKAKDGKL
FT                 LTSQKEQLERWREHFLEILNRQTVEEEVTEAATEEEQEDVDISIEPPSRIE
FT                 IQRAIQQLKNGKAAGMDNITPEALKVDVSTSVEILFPLFKKIWEEEKIPTD
FT                 WKKGLLIKLPKKGDLSECDNWRGITLLSVPSKVLSRVILERIKKRVNSRLR
FT                 KVQAGFREGYSCTDQINTLRIILEQSTELQSSLYLLFVDFEKAFDSVMRKK
FT                 MWKAMQEFGIPKKIIKITQEMYENYTCQVLHQGMLSEPIPVDTGVKQGCLL
FT                 SPILFLMVLDLVMQKAMNRRRGIQWGLTGRLEDLDFADDLCLLASSYKDME
FT                 AMLNDLKTEASEVGLKINGKKTKEMRCNNRNEALFFFKPRDRASQAVLLPG
FT                 KFSHPGGRTIEDIGNRINKAKGAFAMLRPIWKSRELNSYTKLRIFNTNVKS
FT                 VLLYGCESWKTNKQLISRLQIFVNRSLRNILRIWWPQVISNEELWRRTHQT
FT                 PIDIEIRRRKWKWIGHILRRGKDNVARQALEWNPQGSRRRGRPRNTWRRSV
FT                 VAEGTEKGGKAWTEIKTLAQNRVRWRKFVDALCST"
XX
SQ   Sequence 3498 BP; 1206 A; 630 C; 910 G; 752 T; 0 other;
     ccctcggaat accaccttaa cgttggtggg gaggtttgtg tgtgtcagtg atccactgag        60
     ctatgctggc gggagctgtg ctcccggtag ggtcacccat gccagacagg tcagttggtg       120
     agattccaga caaagagtat tccccctagg gggctcctgc cttgggagta tgtgggtggc       180
     aaccacatgg gcccttagct aagtctggca ttacttccac ttacttgtgt caggcttcct       240
     ctgcattctt tcctatcggc ctcccttggc caactcttga tttttccgac cccgacggta       300
     ttaggtttcg aggcccgagg gagtctttca ttttccttct tctactctta ttgtcaactg       360
     ctgccttgta gttagaagtg ggaacttcaa aggctaaggg aagaaacccc gacagaaaat       420
     cagtaggcct ggctacttag aaggcagccc cttcaccagg ctatgggtgc tgaaggctaa       480
     taacctacac acccgagatt aaactattac agaaacatca atgaatagaa gccggatgga       540
     taaaaaggat ttgaccttta gcatgaaatc agatacgaga attggaatgt ggaatgtaca       600
     gacaatgtgg caggcaggaa gattggctga aatatccagg gagatgaaaa gatactaggc       660
     ttaagtgaga cgagatggac tgggttcggt gagataaaga cccaagaagg ggacacgctg       720
     ctgtactcgg gaagagagga agaacataga gggggtgttg gattactgat cactcaaaag       780
     acaaagaaga gtttgataga atggtaccca gtctcagaaa ggattgtagt agctcgcttt       840
     gcatcaagag ttagaccaat tacagtggtg cagtgttatg caccgacaga ggcaggaagc       900
     gaagaagaaa aagagcaatt ttatggtcag ctacatcgaa ccctgttaaa ggcaaagaaa       960
     aaggatatta tggtcgtgat gggagacctg aatgcgaaag ttggcaatga taaccaagga      1020
     gtagaaagta taatgggaaa acacggtata ggtaatagaa atgacaatgg tgagagactg      1080
     attgaatttt gtagtaacca caggttggtg ataggaggca ctatcttccc tcacaagaat      1140
     tgccataaag tgacgtgggt ttcccctgac catagaacgg aaaaccagat cgatcatttc      1200
     actattagca agacatggcg aacctccctg ctggatgtga ggaacaggag gggggcagat      1260
     gttggaagtg accatcattt agtaatagct acgctccgac tgaagattgc aagtactagg      1320
     aacacacagc agaagaggag aataaagtat aactgggaca aactgaaaaa taaagaggta      1380
     caacaatgtt tttcactaga attgagtaac cgattccaac agctaagaga ggatgaagaa      1440
     caggatatcg aacgtaattg gaagagcata gagagtacct acattgatac ctgtgaaaag      1500
     gtactaggca aaagggagag aggaagagaa gaatggatta cttctgagac atgggaagcc      1560
     gtgaaccaaa ggaaggaatg taagaaaaga ctcaatacag caagaacaca agaagagaaa      1620
     gtacaagcta gaactgaatt taacgaactc aacaaaatgg ccaaaaggcg atttcgacgt      1680
     gacaaacgag catttatcaa taaccttgca gcacaagccg agatggcagc acaaaaaaat      1740
     gacagtaaga ccctttacga cattaccaag agactaacag gaaagtgttt tagatctgaa      1800
     aagccggtga aagccaaaga tgggaaacta ttaacctcac aaaaggaaca gctagaaagg      1860
     tggagagaac actttcttga gatcttgaat cgtcaaacag tcgaggaaga ggtgacagag      1920
     gcagcgacag aagaagagca ggaagatgtt gatatcagta tagaaccacc atcaagaata      1980
     gagatccaaa gggccattca acaactaaag aatggcaaag cggcaggtat ggacaacatc      2040
     acaccggagg ccttgaaagt ggatgtgagt acctcagtcg agattctgtt cccacttttc      2100
     aaaaagattt gggaagaaga gaagatcccc acagattgga aaaaaggact cctgatcaag      2160
     cttccgaaga aaggagattt atcagaatgc gataactgga gagggattac cctcctttca      2220
     gtaccaagta aggtactctc aagagtaatt ctagaaagga taaaaaagag agttaactca      2280
     aggctgagga aagtacaagc aggatttaga gaaggttatt cctgtacaga ccagatcaac      2340
     acactgcgca taattttaga acaatccaca gagctgcaat catcattgta tctactcttt      2400
     gtagactttg aaaaggcctt tgacagtgta atgaggaaga agatgtggaa agctatgcaa      2460
     gagtttggga tccctaagaa aattataaag ataacccaag aaatgtatga gaactacaca      2520
     tgtcaagttt tacatcaagg gatgctgtcg gaacccatcc cagtagacac aggagttaag      2580
     caaggatgtt tgctgtcacc tattctattt ctgatggtgc tggatcttgt gatgcagaag      2640
     gcaatgaatc gccgaagagg aattcaatgg ggattgacag gcaggttgga ggacttggac      2700
     tttgcagatg acctgtgttt gctagccagc agttacaagg atatggaagc aatgctgaat      2760
     gatttaaaaa ccgaagcatc ggaggtgggg ctgaagataa atggaaagaa aactaaggag      2820
     atgcgctgta ataaccgaaa tgaagcacta ttttttttta aaccaagaga tcgagcaagt      2880
     caagcagttt tgctacctgg gaagtttagt cacccctgag gggggaggac tatcgaagat      2940
     ataggaaaca gaataaataa ggctaaaggg gcatttgcaa tgctgagacc aatctggaaa      3000
     tcaagggaac ttaacagcta tacaaaacta cgcatattca atacaaatgt caagtcggta      3060
     ctgctctatg ggtgtgaatc atggaaaacc aacaaacagc tgattagcag acttcaaata      3120
     tttgtgaata gaagcttgag gaatatcttg aggatatggt ggccacaagt aatctccaac      3180
     gaagaactat ggagaagaac tcatcaaaca cccattgata ttgagatacg ccgtaggaaa      3240
     tggaagtgga ttgggcatat attaaggcgt ggcaaagaca acgtggcaag acaagcccta      3300
     gaatggaatc cacaaggcag caggagaaga ggcagaccaa ggaatacatg gaggaggagt      3360
     gtagtagcag aagggaccga gaaaggaggg aaggcctgga ctgagatcaa gacactggcg      3420
     cagaacagag tccggtggcg gaagttcgtt gatgccctat gctccactta ggagatacag      3480
     gaaataagtc aagtcaag                                                    3498
//
ID   RTE-5_PPo   repbase;    DNA;    INV; 384 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-384
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3156-3156 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 384 BP; 153 A; 61 C; 79 G; 91 T; 0 other;
     taaacaagct ttaaaattaa aatttcaatg ggctggacac ctgtctagat ttactgactc        60
     tcggtggact atagaaacaa cgaaatggaa gggaccagga ggaaaaagaa gcgttggaag       120
     acctaataaa cggtgggctg atgacattac tgacaaaata ggaaacgact ggatgatgct       180
     tggcagggac agaagggcat ggaaaacggc ggaggaggcc tttacccaac acgggatcca       240
     tatctaaaac taagaaacta acaatactaa cgcaaaaact tgtacatact ttttataagt       300
     caattactaa caatactaac aaatactatg taaatcaatt gtaaaaatct tagatatgga       360
     aataaagagg ctttattatt atta                                              384
//
ID   RTE-5_PXu   repbase;    DNA;    INV; 640 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-5_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-640
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3085-3085 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..612
FT                 /product="RTE-5_PXu_1p"
FT                 /translation="FSPIALNGVNLPTCSDFKYLGSLVQYDGGVDRDVKSR
FT                 INAGWMKWRQVTGVTCDPRMPMKLKGQIYKSIVRPVVLYGSECWATKVSDE
FT                 RRLHVAEMRMLRWMCGVTRKDKVKNVYIRGSLKVAPVIEKLRSKRLAWFGH
FT                 VMRRDDDDISKKVMRLNVDGYKXRGRPKKVWXDCVKEDMRKKGVDSDMTAD
FT                 RDVWRSSTYCADPR"
XX
SQ   Sequence 640 BP; 204 A; 87 C; 189 G; 157 T; 3 other;
     ttttctccaa ttgctttaaa tggtgtaaac ctaccaacct gctccgattt taagtacctc        60
     ggttcactcg tccaatacga cggcggtgtt gaccgggatg tgaaaagccg aataaatgca       120
     ggttggatga aatggcgaca ggtcaccggt gtaacttgtg atccaagaat gccaatgaag       180
     cttaagggac agatctacaa gtccatcgta agacctgtcg tattgtacgg atctgaatgt       240
     tgggccacca aggtttcgga tgaaagaaga ttgcatgtag ctgaaatgcg tatgctaaga       300
     tggatgtgtg gtgtgacaag aaaggataaa gttaaaaatg tgtatattag aggaagtttg       360
     aaagtagcgc cagtgatcga gaaattgagg agtaaaagat tagcgtggtt tgggcatgtt       420
     atgaggaggg atgatgatga tataagcaaa aaagtaatga gattgaatgt ggatggctac       480
     aagnntagag gaagaccaaa aaaagtatgg antgactgtg tgaaagagga tatgcgtaag       540
     aagggggtag actcggatat gacggctgat agagatgtat ggaggagtag tacatactgt       600
     gccgaccctc gatagggata agggcaggtt gatgatgatg                             640
//
ID   RTE-60_LMi  repbase;    DNA;    INV; 3272 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-60_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3272
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 304-304 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..165,169..840)
FT                 /product="RTE-60_LMi_1p"
FT                 /translation="PSQGTLPYRRYLQYRAGGFACSSEVEGYAGGSVATGR
FT                 VTQAGQASTEEPDEMCPTGRGGLYRRGEANPPRGVNPDIKSWSSKLGVGSL
FT                 GQHPIIHKKLLQARESEVEPRKSDRNSLRQLLARKRTLRVGTWNVQSLTNK
FT                 HTEIENEISRLKVDIIILSETKKKGQGNEKFGNFIHFWSGVEKHKRAKAGV
FT                 SILINKALGSYIKDYAFICERIATVTIKLYGIETVIIGVYAPNDDAAQQTK
FT                 DHFYQKLDHLLNQVKKHQEVIIAGDFNVRVGSQVNDAE"
FT   CDS           join(1129..1254,1221..1361,1334..1978,1879..2991)
FT                 /product="RTE-60_LMi_2p"
FT                 /translation="QVATTAIRDRAGFLLKHFSIKDLFQRRLENELKAIPE
FT                 VTMLKTKSDSRSDNVEVEYENIKKALTKISLEVLGTESKSLGKRDPPWMLM
FT                 TTGSSMDADDLKMLIRKRKISTKKWLSTKSQQDRQNYQTTNYQLRNRIKLE
FT                 KNKMWEQKCIEIESLIGGSETTEVWRTITSMKKTQVNKAVDNLIPLKEWKK
FT                 HYADLLTEDRPYYTQGNEEKMEVTDLTIYITTEEVNCALNKMKNGRSPGPG
FT                 NIPVELLKAGGRYLKKRIACLMNNCCTRVEIPSEWKKSYMVSIFKKGIEKT
FT                 QTAIEALVSTVQNSLRMEKVVYGFYFQKGNRKDPNCYRGISVNCTMSRLFG
FT                 KIMFEKIRQNVGHHIGEDQSGFRQNRSCTDNLFILQQLMEKFIAVGKELHI
FT                 AFVDLAKAYDTVPRSKLWEAMKDIGMDDHLLQIIIEMYRNNVVQIKRGSKL
FT                 SEPINVTKGLRQGCSMSPILFNLYVEVALRNWKNSCRGMGITVNNVQIFSL
FT                 SFADDQAIIAQDDYDLEFMIRRLHHEYNNWGLQMSLTKTEYLVVNSDAKFE
FT                 VNINDEAVMRQVEKFKYLGAHIDKNGLGHTEVKYRIKQSRKVLGCLNSFWW
FT                 DKNISNNNKKRVGKIMVESVLCYGSELWILNADLKRRLIAVEMDYLRRSAR
FT                 ISRIERKTNDEVRARMKANDTVIRQN"
XX
SQ   Sequence 3272 BP; 1225 A; 536 C; 741 G; 770 T; 0 other;
     ccctcccaag ggacactgcc ttatcgaagg taccttcagt accgggcggg agggtttgcg        60
     tgctccagtg aagttgaggg ctatgccggc ggtagcgtag ctactggcag ggtcacccaa       120
     gccggacagg cctcaacaga ggagccagac gaaatgtgtc ccacctaggg aagggggggt       180
     ctctataggc gaggtgaagc caaccctcct aggggagtaa accctgatat caaatcctgg       240
     tcctccaagt tgggggttgg atcattgggc cagcacccca ttatccacaa aaaacttcta       300
     caagctcgag aatctgaagt ggagcctcgg aaatcggata gaaactcttt acgacaatta       360
     ttggcaagga aaaggacatt gagagttggt acatggaacg ttcaaagcct gacaaataaa       420
     cacaccgaaa tagagaatga aattagtcga ctgaaggtgg acataataat tctgtcagaa       480
     acaaaaaaga agggacaagg gaatgagaaa tttggaaatt tcatccattt ttggtctgga       540
     gttgagaaac ataaacgagc aaaagcaggc gtttccattc taatcaacaa agctctgggc       600
     tcttacatca aggactatgc atttatatgt gaaagaattg ccactgttac catcaagtta       660
     tatggcattg aaacagttat aataggggtg tatgcaccaa acgatgatgc ggcacagcaa       720
     accaaagacc atttctacca gaaattagac catctactca accaagtcaa aaagcaccaa       780
     gaagtaataa tagcaggaga tttcaatgtg agggttggct cacaagtaaa tgatgcagag       840
     taggaagata tggagaaaat gtcattaata gttctggaga aaatcttgta gaattctgta       900
     accaatatga cttgaaaatt ctgaatacac actattcaca taaagatacc agatatcatg       960
     gagagaccat cattgcagca aaatcaataa ttgattacat attaccaagc aacggccaaa      1020
     aatggtagtt caagactgta gagtcatgag ggagccactg tgggtatgat cactacttac      1080
     ttttagctaa gttgactacc cgtttaggag aaaaccacca acaactgaca agtggccacc      1140
     acagcaatca gggatagagc aggcttcctt ctgaagcatt tcagtatcaa ggatttattt      1200
     caacgtagat tagaaaatga actaaaagcg attccagaag tgacaatgtt gaagtagaat      1260
     atgaaaatat taaaaaagca cttacaaaaa tttctctaga ggtattaggg actgaaagta      1320
     agagtctagg taaacgggat cctccatgga tgctgatgac ctgaagatgt tgattaggaa      1380
     aagaaaaatc tctacaaaaa aatggttatc aactaaatca caacaagaca ggcaaaacta      1440
     ccagacaaca aattaccaat taagaaacag aattaaatta gaaaagaaca agatgtggga      1500
     acagaaatgt attgaaattg agagtctaat aggtggatca gaaacaacag aagtgtggag      1560
     gacaattacc agtatgaaga aaacacaagt aaacaaagca gtagacaacc taattccctt      1620
     aaaggaatgg aaaaagcatt atgcagacct tttaactgag gataggccat attacacgca      1680
     agggaatgaa gagaagatgg aagtaactga tctaactata tacattacaa cagaggaagt      1740
     gaattgtgca ttaaataaaa tgaagaatgg ccgatcacct ggtccaggaa acattcctgt      1800
     tgaattattg aaggctggag gaagatatct gaagaagcga atagcctgcc tgatgaacaa      1860
     ctgttgtaca agggttgaaa ttccctcaga atggaaaaag tcgtatatgg tttctatttt      1920
     caaaaaggga atagaaaaga cccaaactgc tatagaggca ttagtgtcaa ctgtacaatg      1980
     agccgcttat ttggcaagat aatgtttgaa aaaattagac aaaatgttgg ccaccatatt      2040
     ggggaagacc agagcggctt taggcagaac agatcatgta cagataacct atttatttta      2100
     caacaactaa tggagaaatt tatagcagta gggaaggagc tacacattgc ctttgtagat      2160
     ttagcaaaag cttacgatac agtccctaga tctaagctgt gggaagccat gaaagatata      2220
     ggtatggatg atcacctttt acaaattatt attgaaatgt acagaaataa tgtggtacag      2280
     attaaacgag gttcaaagtt atcagaacct atcaatgtca ctaaaggttt gagacaaggt      2340
     tgcagtatgt cacccatctt attcaattta tatgtagaag tggctctccg aaattggaag      2400
     aacagctgca gaggaatggg aatcacagtc aacaatgtac agatattttc attaagtttt      2460
     gctgacgatc aagccattat agcacaagat gattatgacc ttgagttcat gatacgacga      2520
     ttacatcacg aatacaacaa ctgggggcta caaatgagtc taacaaaaac agagtatctg      2580
     gtggtgaata gtgatgctaa atttgaagta aacatcaatg acgaagcagt tatgagacag      2640
     gtagagaaat ttaaatatct cggggcacat attgataaaa atggattggg ccacacagaa      2700
     gtaaaataca gaataaagca aagcagaaag gtgttagggt gtttgaattc tttttggtgg      2760
     gataagaata tttccaacaa taataagaaa agagtaggta agataatggt tgaatcagtg      2820
     ctatgctatg gatcagaact atggatatta aatgcggatc tcaaaagaag actaatagct      2880
     gtggaaatgg actatttgcg taggagtgcc agaatatcaa gaatcgaaag aaaaactaat      2940
     gatgaagtaa gagctagaat gaaggcaaat gatacagtga taagacagaa ttgaaagaaa      3000
     atcactgaaa tggtacggac atatgatgag aatgccagat catcggtggc caaagaaggt      3060
     ttatgaatgg aaaccacccg gcagacgtaa gcgcggaaga ccacgacgct cttggacaga      3120
     ccagataaat ggagtgatgg aacatcgcgg catcgacaag aaagaagcgc tggataaaga      3180
     ggcttggcgg aggataacag gaatacgaca agatgttgtt attaattaat ctttgtatta      3240
     attaatcctg taataataat aataataata at                                    3272
//
ID   RTE-61_LMi  repbase;    DNA;    INV; 1037 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-61_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1037
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 159-159 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1037 BP; 371 A; 159 C; 261 G; 242 T; 4 other;
     tgtacaaatt ttgagaagac tgaacttaga cggaaagata ttcattgtgt agaaaatttg        60
     tactggaatc aaacagctga gcttagaatg gcggcaagtg aggagcacaa aaatccgtag       120
     aggagttaga maagagtgtg tactctcacc attctcttta acctgtactc agaacatata       180
     ttccaggagg cgcttgaaga tcgtgagata ggtatcaaag taaatggggt atggattaac       240
     aacataakat acgcagatga cgcmgtctwa atcgcagata atgtgaacga cctgcaagat       300
     cttctgactg cagtgggaga acacagcggg attatggggc tcaatatcaa caccaaaaat       360
     ttatgatcgt cactcgtaat tcagaggagt atcaaaatgc agaaataatg tataataatg       420
     aatccataga cagggtgaat agattcaact acttagggac gtggttgtgc gaaaattggt       480
     caactgacat ggaaatcaga tgcagaatag agaaggcccg cagtgcattc atgaaattta       540
     acaaagtgtt tacaagcact gactttgatc ttgatctcag aattagattt atgaagagtt       600
     atgtgtggtc agtagttttg tatggcgtgg aaagttggac gttgaaagtg aacaccatga       660
     acaagttgga agcattcgag atgtggttat atcgaaggat acttaaaatt ccatggacag       720
     caaggaaaac aaatgaagag atcttgagaa tagtaaaaag agagcgcgaa ctgctaacca       780
     caataaaacg caagaaaaca gcttacttag gtcatgtgat acgaaatgaa ggtatcatct       840
     tcttaaactg ataatcgagg ggaagactga aggcaaacga ggaattggca ggaggaggat       900
     gtcatggctc cgcaacatca ggcagtggac aggagtaaga aatgccgggg acttgatcca       960
     tgctggaaga gatagagaag actgggcaaa tgtgatcgca aacatccatt agtggatttg      1020
     cagcagaaca gaagaaa                                                     1037
//
ID   RTE-62_LMi  repbase;    DNA;    INV; 3682 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-62_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3682
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 305-305 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(262..1263,1215..1379,1375..1758,1751..2401,
FT                 2465..3436)
FT                 /product="RTE-62_LMi_1p"
FT                 /translation="MKRPFREKFPPSNPIGKEKATSDSVGSQLEDSNESEH
FT                 LKSPNYHQARNAKIKHKHINYIATHNINSLLQTGKLKNFTDELNRQNIIIA
FT                 GLQEMRNTIEDPFEXQGYRIYNGKPGQRVMKQCPQFGTGFIVNLKVIDSIT
FT                 DFKAISPRIATLTLKATNKIYTIINAHAPTNQKNFLTRTMVEVEKFWDLLD
FT                 QTINQVNKNHVKILIGDFNAQLGKERKYRDIIGKWAPHKHTNRNGQRLVEI
FT                 CRTYGLISKSTYFKRKPSKLMTWKHPDWTKGEWQLDHVCMDKFFHKEIQNV
FT                 KVLRGMDTGSDHYMVNIKIKFTPLSKKRQRALEIKESMIHINKKTESIGDK
FT                 RKYDPHKLIKNDKYQKNTQNTVITDNLQELIPILKQHAEESAPVNQTSKKH
FT                 AWWTTECDEIHDERHQAWIKFQTHRTEENAYNLKNIRKKFSQIIRKTKRLY
FT                 QKDVLSSIEENYHETNSRDYFKAFDKQLRKFNPPTLLLRNKDGRIAHNNKE
FT                 NAEIMAEAFNKLLNLTNLKSFKAFNNRHKHPCNNQTRKYSPPTVQEIETAL
FT                 KEMRNYKACGENQVFAEMWKYAGTTTRTSLHTILQKIWTTEKFPEEWTTAI
FT                 ITPLHKKGDKSDPDNYRGISLLDCTYKIFSKILHNRIREQLDKELGEYQGG
FT                 FRPWRSCAEQIITLKLIMAYYRKRNKPLSITFIDFKKAYDSIHRPSLLKIL
FT                 RHFGLHLKLIRLTELTLTNTNSKIKFEGNFLDHSIHMREWYKANPKNIKVG
FT                 TQKDNIKLNCLGFADDLALLANNIQETKQQIRSLQEIAQCIGLKISFEKTE
FT                 IMVTEPPLANKIRIGVHNIKIVEKFKYLGEIITHNLNEKPSWQSRINKLIK
FT                 MHHVTKNTYNKKCLSIATKLKHYKTVTQPQITYASETIFKTTNTVAIDRLL
FT                 KIERRIVRTCINKKYQKDGIWRIASNETVYKEVEPVTSTMKKKRISFLGHL
FT                 MRTPENRISRKIIEKLWNSKSNIRWITEIKEDMMKLQITMEDLKDKTDTLK
FT                 ILQDKHVTLPIKINKQRLGRVISDEERRARSERMKKYWANKKKNKNKNNRR
FT                 T"
XX
SQ   Sequence 3682 BP; 1504 A; 676 C; 661 G; 840 T; 1 other;
     ttgcttgtct cctaccgagc gcctccccag gtggcggata gggggatgct caccagatat        60
     ggtgggtacc ggggaaataa aatacccggg gtggaccaaa actagcacaa gggcacgacg       120
     gatccatatg tcagtggcgg taccccaaca gcgtctgttc cacatgtcag tggcggctga       180
     tcagtatcct ctgtggctaa ctaccatagt tgtaacacgg agctcgctcc actcaaggtt       240
     gatagcctct gacagtcaat catgaaaagg ccttttagag aaaaatttcc accgtccaac       300
     ccaataggga aggagaaggc tacgtcggat tcggtgggta gccaactaga agactcaaat       360
     gaatcggagc atttgaaatc acccaactat catcaagcac gtaatgcaaa aataaaacac       420
     aaacacatca actacattgc aacacataac ataaactctt tactgcaaac tggaaagctc       480
     aagaacttca cagatgaatt gaacagacag aacatcataa tagctgggct ccaagaaatg       540
     agaaatacaa tagaagatcc atttgaatmt caaggttata gaatttacaa tggaaaacca       600
     ggacaaagag ttatgaaaca gtgcccgcaa tttggaacag ggtttatagt aaatttgaaa       660
     gtaatagact caataactga ttttaaagct atttctccac gaatcgcgac cttaactctg       720
     aaagccacaa acaagatcta tactatcata aacgcccatg ctcctacaaa tcagaaaaat       780
     tttctaacca gaactatggt agaagtagaa aaattctggg accttttgga tcagaccata       840
     aatcaagtca ataaaaacca cgtaaagatt ttaatagggg attttaatgc ccaactggga       900
     aaggaaagga aatacagaga tataattgga aaatgggctc cgcataaaca caccaataga       960
     aacggacaaa ggcttgttga aatctgcaga acatatggac tcatctctaa atctacatat      1020
     tttaaaagaa aaccaagcaa gcttatgaca tggaaacatc ctgactggac aaaaggagag      1080
     tggcagctgg accatgtctg catggacaaa ttctttcata aagaaattca aaatgttaag      1140
     gtactgagag gaatggacac aggttcagat cattatatgg tcaacattaa aatcaaattc      1200
     accccattaa gtaaaaaaag acagagagca ttggagataa aagaaagtat gatccacata      1260
     aattaataaa aaatgacaag tatcagaaaa acacacagaa tacagtaata acagataatc      1320
     ttcaggaact aataccaatc ttaaagcaac atgctgaaga atcggcccca gtaaaccagt      1380
     aaaaaacatg catggtggac tacggagtgt gatgaaattc acgacgaaag gcatcaagct      1440
     tggataaaat ttcagactca cagaacagag gaaaatgcat ataacctcaa gaacatcagg      1500
     aaaaaattct ctcaaattat caggaaaaca aagcggctat atcaaaagga tgtactgagt      1560
     tccattgaag aaaactacca cgaaaccaat tccagggatt atttcaaagc ctttgataaa      1620
     caattgcgta aattcaaccc tcccacttta ctgctgagaa ataaagatgg aagaatagct      1680
     cataataaca aggaaaatgc agaaatcatg gcagaagcat tcaacaagct cttgaacttg      1740
     acgaacctga aaagctttta acaatagaca caagcacccc tgtaacaacc aaaccagaaa      1800
     atatagccca cctacagtac aagaaataga aactgcactt aaagaaatga gaaactacaa      1860
     agcatgtggt gaaaatcaag tgtttgcgga aatgtggaag tatgctggca caacaactcg      1920
     gacgtctcta catactattt tacaaaaaat ttggacaaca gaaaaattcc cagaagaatg      1980
     gaccacagct ataattaccc cacttcataa gaaaggagac aaaagtgatc cagataacta      2040
     tagaggaatc tcgctcttgg attgcaccta caagattttt tccaagattt tacacaacag      2100
     gatcagagaa caactggata aggaactggg ggaataccaa ggaggcttca gaccttggag      2160
     gagctgtgcc gagcaaataa ttactctaaa attaatcatg gcttattacc gcaaaagaaa      2220
     caagcctctc tcaattacat ttatagattt taagaaagcc tatgattcta tccatagacc      2280
     ctcattgtta aaaattttga gacatttcgg actccaccta aaattaatca gactgacaga      2340
     acttaccttg acaaatacaa attcaaaaat taagttcgag gggaactttc tggatcattc      2400
     atgataaaaa atggtctagg cagggagacg gcctgtcacc ccttcttttt aattgtgccc      2460
     ttgaatacat atgagggaat ggtataaggc caatccaaag aatattaaag ttggaacaca      2520
     aaaagataac ataaagttga actgtttagg atttgctgac gacctcgctc ttcttgcaaa      2580
     caacattcaa gaaaccaaac aacaaatacg atcattacag gaaatagccc agtgtattgg      2640
     ccttaaaata tcttttgaaa aaactgaaat aatggtaaca gaaccgccac tggcaaacaa      2700
     aattagaatt ggagtacaca acataaaaat tgttgaaaag tttaaatact tgggagaaat      2760
     aataacccat aacttgaacg agaaaccatc atggcagagt agaataaata aacttattaa      2820
     aatgcatcat gttaccaaga acacatataa taaaaaatgc ctctcaatag ccacaaaact      2880
     gaaacactac aaaacagtca cacagccaca aataacatat gctagcgaaa ctatatttaa      2940
     aacaaccaac actgtagcaa tagacaggct actcaaaata gaaaggagga tagtcagaac      3000
     ttgcataaat aagaaatacc aaaaagacgg gatttggaga atagcttcaa atgaaactgt      3060
     ttataaagaa gtagaaccag tgacaagtac aatgaaaaag aaacggatct ctttcctagg      3120
     acatttgatg agaacaccag aaaatagaat cagcaggaag ataattgaaa agttatggaa      3180
     cagcaagagc aacataagat ggatcacaga aatcaaggaa gacatgatga aactacagat      3240
     aacgatggaa gatttgaaag acaagacaga cacactcaag atacttcagg acaaacacgt      3300
     cacactacca ataaaaatta acaaacagag actgggaagg gtgatttcgg atgaggagag      3360
     aagggcacga tctgaaagaa tgaaaaagta ttgggccaac aaaaaaaaaa ataaaaataa      3420
     aaataacaga agaacctaat tcataatatt tatgttggcc ataaaagtaa taaataaaaa      3480
     aaataaataa cctctgtatt attaaattgt catgtttatt tttgaactaa attgtattaa      3540
     tgcataacaa caaattgtaa taacctctgt attattaaat tgtcatgtta ttattttgaa      3600
     ctaaatttgt taacaacaaa ttgtaataac ctttgtaata ttgactaaag tggtccaatg      3660
     aaggccataa aataaataaa ta                                               3682
//
ID   RTE-63_LMi  repbase;    DNA;    INV; 3201 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-63_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3201
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 160-160 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 3201 BP; 1182 A; 551 C; 747 G; 710 T; 11 other;
     gccagacagg tcagttggtg agattccaga caaagtagtc ggctcctccc tggggagtat        60
     ggcggtggca accacacata gctaagtctg acattacttc cactgattgt gtcaggcttc       120
     ttctgtttcc tctcctatcg gcctcccttg gccaactctt attcttgttt gaggcctagg       180
     gtgtctcaca caaaaattat ctggtcagga cactacataa ggaacgggac tgtctcaatt       240
     ggaatcagaa acggcaacgg acaaaggatt tctcttttgg aacatggaat gttaggagtc       300
     tatacagacc aggaactgcg cagaatttga ccaaagaatt agagaaatac catctgaaaa       360
     tggtagccct ccagaagatt asatggaagg gtactgggtm aatcaakatg aatgcgggaa       420
     gtaccctaca cggagactgt cgtsagttag gcamtggttt cwacgtacat gactctttaa       480
     tsgaagcggt gaaagaattt aaawmtgtta acaacagaat sccttacats acaaccgcag       540
     ggcgaagtaa taatgtctcc tttattaatg ctcatgcacc atgcgaggat aaggaagatt       600
     tcattaagga ggaattttat actgaattag acaaggtata taattcactg ccaaaccaca       660
     atgttaaaat agtgttgggg gatttcaacg ccaaactggg tcaaggaaac atctataaat       720
     ctgtgatagt aatgcaagtc tgcaccagga aaccagtgat aatggcatcc atctgatcag       780
     tttcgcaatt gacaacaatc tctgcatcgt gagtacaagg ttccatcgaa aggacattca       840
     taaaggaaca tggatggcac cggatgggca tacagtaaac cagatagacc atgtatgcat       900
     ccagaagcgt tatgcaaaca gcatcaaaga cacgagaacc tatagaggag cagactgtga       960
     ctctgatcac ttcctggtga taagtaaaat gaacattaaa tataagaagg tgtacaggat      1020
     aagtaagaag actgcacctt atgacacaaa taggctaaaa gaaacggagg taagaaggaa      1080
     gtatgagtca tcagtagcag agagcctaat gagttgtgat gaatggtaga tgctggtgat      1140
     gtgaacaatg atggtctcaa attaaggaaa caataaatag tgcagcctct aagatactgg      1200
     gcaaaaggaa aaagtcagat aaagtgtggt ttaaccaact gtgccaccaa aaaattgaag      1260
     aaagaaggtt ggcaaggaag atttggttag aaaatctgag agaccacgat ctcagagaca      1320
     agtataccag aatacgaaag gaaacagcta ctatactaag acaagagaaa cgtaaatatt      1380
     acaaggaatt aatagaagag gcagaagaga ttgtatccat cacaggacaa gacagatgta      1440
     ccaaaaagta aagaaagtta cacaaaaata taagaagaga gaaacattta ttaaagacac      1500
     ccaaggaaaa atcctcacaa gtgatgatga agtagaacag cgttgggcag actacttcgc      1560
     taatttacta aactgcgaag accccactga acccctttta tgtgatgtgc catatacagt      1620
     agacaccaaa gtagagccac ccaatgaaga agaaatacag ggaatagtta aaaatctaaa      1680
     aaataataaa gcttcaggtg aagataaaat tgtgggtgag ctaataaaga atggaggacc      1740
     agaattagta aaaagaatta ctaaactgat aaggaaagtg tgggaatatg agaaaatgcc      1800
     tgacgactgg aaaacagccg taatctgccc catattcaaa aagaatgacc cctggactgt      1860
     gataattaca gaggaatttc actccttaat gtaacttata aaatcctgtc acagtgttta      1920
     ctcaagagag tgataccact agcagaggaa attacaggtg attatcagtg tggttttaga      1980
     agagataggt caactagtga ccacctgttt acacttcgac agataactga gaaggcctgg      2040
     gaatataacg ttgacatcca catggtattt gttgacttca aaaaagctta cgacagcata      2100
     cacaggagca caataaccaa cgtcctcaaa gagtttcaat ttcctggaaa gttaatacgc      2160
     ctagtgcaga tgtgcctgga ggaaacctat tgcaaagtaa agaccaacac aggagtatct      2220
     aaggagtttg aagtcagaac aggccttaga caaggagatg cattatcccc aatacttttc      2280
     aatctggttt tagaaaagat agatagggaa cacaaaaaag ctaacccggt tggaataagg      2340
     atgggtcgta ataaaataca tcgtcttgct tatgcggacg atattgtcct aataagtggc      2400
     aataaagaag aattgcaacg catgacaagc tcctacagaa agattgcaaa gaaagcagga      2460
     ttagagatca acgagaagaa aacagagtac atggtcgtga gcaaggcacc taatgatggc      2520
     agtccactga cagttgatga tctcactttt aaaagagtag acaccttcaa atatttggga      2580
     agcatcatca gtgaacagaa taaaatggaa attgaaattc aagcgaggct agcagcagcg      2640
     aataaagctt attttggcct acgagatgtg ttacgcagta gagctgtttc gagaagcttc      2700
     aaactcagac tataccagag tgtaattcta ccagtagctc tatacgggtc agaaagcttt      2760
     acatttagaa aagcagatga acaaaaacta ttagtttttg aaaggaaaat tttacggaaa      2820
     atttttggcc ccaagagaga cccagataca ggggagtgga ggatactgaa aaacaaggaa      2880
     ctgaaagagc tatatcaaca ggctgatatt agtcaaagga tgaagagaag aagactgatg      2940
     tgggctggac atctaattag gatggaggag gaacgactgc ctaaagtagc attctctgaa      3000
     tccatggagg gaagacggaa gagaggaagg ccacgtacta gatggaagga tgacatcgac      3060
     gatgatgcgg tgaccatggg cctgagaaaa ggagaatgga ctgcaaaagc aaggaacaga      3120
     gaggactgga agaggaatgt agagaacgcg tatggtctcc aaggcccaag cgacaattaa      3180
     gaagaagaag aagaagaaga a                                                3201
//
ID   RTE-64_LMi  repbase;    DNA;    INV; 3474 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-64_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3474
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 306-306 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(703..1197,1224..1664,1597..1983,2012..3406)
FT                 /product="RTE-64_LMi_1p"
FT                 /translation="AGCQRRSTVGMAFMVHRTILESIREVTPVNNRMVTMH
FT                 IQCANKKYTLINAHAPTNQTNKKDPQSADKFWSTLNKVLSKVPKDDIKLLL
FT                 GDFNAQIGREKIHRKTVGNYPAHKFTNKNGTRLIELCQQYNLKLMSTSLRK
FT                 HPSKQKTWCSPVQQLGEFQIDHVAISRTGTQGGPTLTLTTTSKMIADSGVK
FT                 EAWEKEPKMTGKLLPKNHRKSTSSHSSEEEHQAPWWDTDCEKLHHQEVAYR
FT                 NTQQQVPRKFTGIQRNTKDNSKNYQTIQEEIPEGTAGSIEDNFRNYNVRDF
FT                 YRTFAGQIEDTHHQTSASEKGTSTGRLQGKSRIHTTKPLLQKSDGKLALTN
FT                 KENCKVLAQYFAELLNCSEPTDRFPAEEPTDSHTDSLPPTQEEVHKHILRL
FT                 KNNRTSGEDGIVAELLKHLGPNSLENSHRSSQTYGHQKSYQTTGNVHPHRC
FT                 KQLQGHLTIQVTYKVFSACLLQRTQDQLEHKIGEYQAGFRPGRSCAEQIFN
FT                 LKTTLKIKALRNTPVICTFVDFKKAYDSVDRQSLFNILHEQGLDGKTLRLI
FT                 KQTLTDTTSKVKFKGEISEPFQIKTGVRQGDGLSPLLFNIVLDKVIKEWEK
FT                 ELKTQGHWKPVRLGRPKDKLEVGCLAFADDLALLTDNETTAIRQIEILKEC
FT                 AEKVGLQISFQKTEFFCTKLNIPNLNTKYGKINRVAHFKYLGEVIEPTGKE
FT                 KIAQNTRVLKMKRALYKTQDIYNKKCLSTFTKIRHYNTVIKPEVLYASETL
FT                 MLHTKTDLENILTQERKIIRKIIGPKITDEGYRLHSRDTTEKFSNIAADIR
FT                 KRRLKFYGHISRLPQTRLTNRILRYIQGLKTTTPWMIQVKIDLERAHIDSE
FT                 DIIDKVVFRHKVYKWEVMSEKTAPKAQRPKWSEDRKRAFSERMKEYWKNRK
FT                 NK"
XX
SQ   Sequence 3474 BP; 1215 A; 854 C; 757 G; 648 T; 0 other;
     ccggtctagc ccggggcctc atcttgcaag tgatgaggaa ggaggagcgg gaggagtatc        60
     aacctcgtta aaaaaccagg gtccatctgg ctccggatgg tagcaccctg ttatagggcc       120
     ccatgccagg gttacggtga agacctcaac ggcatctacg gtggagaaga ggacttcaaa       180
     tcagtgtagg tggcggaaga ggcagcccag tactcgggat taatggagga tatcaaatcc       240
     aagtcgcgtc tgcagtggga gccaccggcg actggtcagc gtctgttcac tcagtgagtg       300
     cggctgtaac acatgcttca ggaactgaca atccctgatt ctaataaacc cagtgggcga       360
     ccactggaca ccaatgctta caagcaatca tgactcgtgt aagtaataac agcaataccc       420
     caggtggtaa ccaatccacc ctcgacaggg gcaaccgggc actcggattc tgggggacgg       480
     acttcccgat cacagagaaa gtcggattct ctgacaaact cccacgcaag acaccaatga       540
     cataggtacc ctcaacatca acactctcat acagcctgga aagctacaca atctagagac       600
     agaaatcgat aggcagaaga tactgtctgc aagagacact atcacagacg aagtcaccac       660
     agactacagc aattaccaca tctttaagag caaaactgat aggcaggttg ccaaaggcgc       720
     tccactgttg ggatggcctt catggtccat agaaccatac tcgaatccat cagagaagtc       780
     acaccagtaa acaaccgaat ggtgaccatg cacattcagt gtgccaacaa aaaatacaca       840
     ctgatcaacg cacatgcccc cactaaccag accaacaaga aagacccaca gtccgcagat       900
     aaattctggt caaccctcaa caaagtatta tccaaagtcc ccaaggatga catcaaactt       960
     ctccttggtg atttcaatgc acagattggc agagaaaaaa tacacaggaa aacagttgga      1020
     aattatcccg cacataaatt caccaacaaa aatggcacac ggctcataga gctctgccag      1080
     cagtacaacc tcaagctcat gtcgacatct ctcagaaaac accccagcaa acagaaaacc      1140
     tggtgttcac cagtccagca gttaggcgag ttccaaattg accatgtggc aatctcgtaa      1200
     ccagtacaga aagaggtcca tgacgtacag gtacgcaggg ggggccaaca ttgactctga      1260
     ccactacctc aaaaatgatc gctgactctg gagtgaagga agcttgggaa aaagaaccta      1320
     aaatgactgg caaacttttg ccgaaaaatc atagaaaaag cacaagctct cattcctcgg      1380
     aagaagaaca ccaagcaccc tggtgggaca ctgattgtga gaagctgcat caccaggaag      1440
     ttgcatacag aaatacacag caacaagtcc ccagaaaatt tacaggtatt caacgaaaca      1500
     caaaagacaa cagcaaaaat tatcagacaa tccaagagga aatacctgaa ggaacagctg      1560
     gctctataga ggacaacttc cgcaactaca acgtaaggga cttctacagg acgtttgcag      1620
     ggcaaatcga ggatacacac caccaaacct ctgcttcaga aaagtgacgg aaaattggca      1680
     ctgacgaata aggagaactg caaggtgctg gcacagtact tcgcagaact tctcaactgc      1740
     tcagaaccca cagacagatt cccagctgaa gaacccacag acagccacac agactcactg      1800
     cccccgacac aagaggaagt tcacaagcac atactcagac tcaaaaataa caggacatct      1860
     ggcgaagatg gcatagtggc cgaactactg aaacaccttg gaccaaactc actcgagaac      1920
     tcacacagat catcacagac atatggacat cagaaaagtt accagacgac tggaaatgtg      1980
     cactgatcca cccactgcac aaaaagggtg accccacaga tgtaaacaat tacaggggca      2040
     tctcactata caagtcacat acaaagtatt ctcagcgtgc ctactccaaa ggacacagga      2100
     ccagctggag cacaagatcg gcgagtacca agcgggcttc cgccctggtc gctcctgtgc      2160
     agaacaaatc ttcaatctga agactaccct gaaaatcaaa gccctcagga atactccagt      2220
     catatgcacc ttcgttgact tcaagaaggc atatgactcc gtcgaccgcc agtcattgtt      2280
     caacatccta cacgaacaag gtttggatgg caagacactg cgactgatca aacaaacact      2340
     gacagacacg acatctaagg tgaaattcaa gggggaaatc tccgaacctt tccaaatcaa      2400
     gacaggcgtt cgccaaggtg acggactctc accgctcctc ttcaacatag tgctcgataa      2460
     agtcatcaag gagtgggaga aggagctgaa aacacaaggg cactggaagc cagtgcgact      2520
     tggacgaccg aaggacaagc tagaggttgg ctgtctagcc ttcgcggatg atctggcact      2580
     actcacggat aacgaaacta cagcaatcag acagatagaa atactcaaag agtgcgcgga      2640
     aaaagtaggg ttacaaatct cctttcaaaa aactgagttc ttctgcacga agctaaacat      2700
     accaaatttg aacacaaagt atggcaagat taacagggtt gcacacttta agtacctagg      2760
     tgaagtgatc gaacctacag gaaaagagaa aattgcgcag aatactagag tattgaaaat      2820
     gaagagagct ttatacaaaa cgcaggatat ctataataag aaatgtcttt ccaccttcac      2880
     caaaattcgt cactacaaca ccgtaatcaa accggaggtg ctatatgcca gtgagacact      2940
     gatgttacac acaaagaccg accttgagaa catcctcaca caggaaagaa aaatcattag      3000
     gaaaattatt ggaccaaaaa ttacagacga aggctataga cttcactcca gggatacgac      3060
     agagaagttc tctaacatcg cagcggacat tagaaagagg cgactaaaat tttatggaca      3120
     catcagcaga cttccacaga ccagactcac caacagaatc ctcaggtaca tccagggtct      3180
     caagaccact acaccctgga tgatacaagt caaaattgat ctggaaaggg cacatataga      3240
     ttcagaagac atcatagaca aagtcgtctt tagacacaag gtgtacaagt gggaagtgat      3300
     gtcagagaaa acagcaccta aagcccaacg accaaagtgg tctgaagata ggaagagagc      3360
     ctttagtgaa agaatgaagg aatactggaa gaacaggaag aacaagtagt catgaatgtt      3420
     tcgcgtggtc tgataaaagg cctgtaacgt gtgtaataat aataataata ataa            3474
//
ID   RTE-65_LMi  repbase;    DNA;    INV; 3393 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-65_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3393
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 307-307 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(346..651,639..821,773..1078,1147..1557,
FT                 1524..1784,1850..2935,2883..3224)
FT                 /product="RTE-65_LMi_1p"
FT                 /translation="LDIMHETNRASRFIPHNQKLRXKSKTFLATFNINSVT
FT                 QTGKLKTLTKALHENQISIIALQETRYPDEEIFESDGYCFFKILNGAVMLG
FT                 TVCCENQILNSHKLQSQTLTMNDRLSTLTVKCANKTYALVNLHAPTQDKNR
FT                 SDPDEVDNFWTYWMKNCLKFLNTMLLDLLDEKLSKIPKHHVKLLMGDCNAQ
FT                 LSQERKYKKIIGNYPAHKRTNQNSKRLVSICESHNLQVMSTHFCHLPESRP
FT                 LAISHPNHRRVPNRLCRDLQEEQPLSLQTQKDHQTIHFDMINFDKGSWSCK
FT                 KKQDQVTVTSISPKVHYRAAKEVAEIKRSKKHAWWNDTCESVLKERLSAWK
FT                 QYYSTKLETDWETYKIQRAQTARAIRTEKRKYEKSLIEKIEQNFRKNETRS
FT                 TTEPSNANNQEYYRAFKRKLXGYKPPSLCFQRKDGTLATSNEENCQILADY
FT                 FRDLLNCNKPPNPIETKEPLLRCPESRPPDIDEIKRHIARLKNNNLAKQIE
FT                 KNWNEETLPEDWKTALIHPLHKKGSMKDINNYRGISLLPVTYKILSLAILE
FT                 RLEAQVANQIGEYQGGLIKSRSTAEQIYNLKTIIRYYSLRSKHYVSVFVDF
FT                 KKAYDSIDREVLLNILNEFGVDLKLQGLIRATLTDTKSKVKFLGCLSDSFE
FT                 VKTGVRQGDGLSPMLFNCVLEKIIRTWRERLMETNYSPLRIGTKSKGIEVD
FT                 CLAFADDIAILSDNIDTARVQIELLKEIAEQTGLQISFEKTEVMTNIKDAP
FT                 PKLRTKYGVIARVDKFKYLGEIIMKNGLDKEALRERIRKLETAYQTSRTIY
FT                 NKKCLSQNTKIRHYETVLKPVVLYAAETLSLNADKGLLEELEKKRAQNHML
FT                 IKDSSKNWRKKERKIIRGILGSKYKNGIHQNRSNKEVYSKIEKITDTIRKR
FT                 RARFYGHLKRMDGNRLIKNIFPFFIQNQKLRCHGLKTPKKTSRCYISNPKM
FT                 PLTEFFSERR"
XX
SQ   Sequence 3393 BP; 1227 A; 778 C; 684 G; 701 T; 3 other;
     ggtggcggat aggggaagat atgtgggtat ggaaataaaa tacccagggt agaccaaaac        60
     tctagtggct gctgcctctg cgtgaattgg tcatcaaagg ctaaaggaag aaaaccttga       120
     gaagaaatta cctttataat cacacagaag ccagaaaaca tcttgaggca acctctaggg       180
     ctaacaactc tagttgtaac caagatgcgt atgcgtccaa aacaaattca agtmaagaag       240
     catgatggca caacatttca agaaaattac cccagggggt aagtcttcgg atgaatccct       300
     ctcgtgaagc cacggcgcac gagtctcatt cggattctgg ggtgactcga catcatgcat       360
     gagacgaatc gagcgtctcg gtttattccg cacaatcaga aactcagamc taaatcaaaa       420
     acctttctag caactttcaa tataaactca gtcacacaaa ctggcaagtt gaaaaccctc       480
     accaaagccc tacacgaaaa tcagatatcc ataattgccc tacaagaaac aaggtaccca       540
     gacgaagaga tctttgaatc cgacggttac tgttttttta agatcctcaa tggagctgtg       600
     atgcttggaa ctgtttgctg tgagaaccaa atccttaaca gtcacaaact ctgaccatga       660
     atgacagatt atccacactg acagtcaaat gtgccaataa aacctacgct ctagtaaact       720
     tgcatgcccc tacacaggat aaaaacagat ctgacccaga tgaagtggat aacttctgga       780
     cctactggat gaaaaactgt ctaaaattcc taaacaccat gtgaaactcc ttatgggtga       840
     ctgcaatgcc caactcagcc aagagcgaaa atacaagaaa attataggaa attaccctgc       900
     ccataagaga accaaccaaa acagcaaaag acttgtatcc atctgtgaaa gtcacaacct       960
     gcaggtaatg tcgacccact tctgccacct accagaaagc agaccacttg cgatctccca      1020
     tccaaaccat cggagagttc caaatagact gtgtcgcgat ctccaggagg aacagccctg      1080
     aaattgtgaa cgtcaaagtg aagaaaggca taaatgtggc ctcagatctc tgtgattaaa      1140
     ttctaactat ccctgcaaac ccagaaagac caccaaacaa tacattttga catgataaac      1200
     ttcgacaaag ggtcatggag ttgcaagaaa aagcaagacc aagtgactgt gacttcaata      1260
     tcaccaaaag tgcattatag ggctgccaaa gaagttgcag aaatcaaaag aagcaaaaaa      1320
     catgcctggt ggaatgacac atgtgaatca gtcctcaagg aaaggctcag tgcatggaaa      1380
     caatactatt caactaaatt ggaaactgac tgggaaacct acaaaatcca acgtgcgcaa      1440
     acagccaggg cgatcagaac tgaaaaacgt aagtacgaaa aatcgctcat tgaaaagata      1500
     gaacaaaatt ttaggaagaa tgaaaccagg agtactacag agccttcaaa cgcaaactga      1560
     scggctacaa accgccgtca ctatgcttcc agcgaaagga cggtacactg gcgacttcaa      1620
     atgaagaaaa ttgtcagatt ctagcagact actttcgaga cctactgaac tgtaataaac      1680
     ctccaaaccc cattgagacc aaagaaccac tgctcaggtg cccagagtcc agaccacctg      1740
     acatagatga aatcaagcgc cacattgccc gtctcaaaaa caactaagcg cctggagaag      1800
     actcagtcat agcagaactg tggaaatatg ccccaaagga atcacttgaa atcttgcaaa      1860
     acaaatcgaa aaaaattgga atgaggaaac actgcctgaa gattggaaaa cggccctgat      1920
     ccatccctta cacaagaaag gcagcatgaa agacattaac aactaccgag gaatatccct      1980
     gctaccggta acttataaaa ttctctcact cgccattctg gagcgcttag aagcccaagt      2040
     cgcaaatcaa ataggtgaat accaaggggg tctcataaaa agtcgctcaa cagccgaaca      2100
     gatctataac ctcaaaacaa taatcagata ttatagtcta agatccaaac actacgtgtc      2160
     agtctttgtg gacttcaaga aggcatacga ctccatagac cgggaggtcc tgctgaacat      2220
     cctaaatgag ttcggagttg accttaaact gcagggatta attagagcta ccctaacgga      2280
     tacaaaatcc aaagtaaaat tccttgggtg tctttcggat tcctttgagg tcaaaacagg      2340
     ggtcaggcaa ggtgatggtc tgtctccaat gcttttcaac tgcgtccttg aaaagatcat      2400
     cagaacctgg cgcgaaagat taatggaaac caactatagc ccgttacgaa ttggaaccaa      2460
     atcgaagggg atcgaggtag actgcttggc ctttgccgac gacattgcca ttctgtcaga      2520
     caacatagac accgctagag ttcaaatcga actgttaaaa gaaatcgctg aacaaactgg      2580
     tctgcaaata tcatttgaga aaacagaagt catgactaac attaaagacg ccccaccaaa      2640
     acttcgtact aaatatgggg tcatcgcccg ggtggacaaa ttcaagtacc taggtgagat      2700
     cataatgaaa aatggactgg acaaggaagc gcttagggaa cggatacgca aactagaaac      2760
     agcctaccaa acatcccgca cgatctacaa caagaaatgc ctttcccaaa acactaagat      2820
     acgtcactac gaaacagttt tgaagccagt agttctgtat gcagctgaaa ccttatcctt      2880
     aaatgctgat aaaggactcc tcgaagaact ggagaaaaaa agagcgcaaa atcattagag      2940
     gaatcctagg atccaagtac aaaaatggca tccatcaaaa cagatccaac aaggaagtct      3000
     acagcaaaat agaaaaaatt acagacacaa tccgtaaaag acgggcacga ttttatggtc      3060
     acctcaaacg aatggacgga aataggttaa tcaaaaatat atttcctttt tttattcaaa      3120
     accaaaaact acgatgccat ggtttaaaaa caccaaagaa gacctccaga tgctacatat      3180
     caaacccgaa gatgcctttg acagagttct tttccgaaag aagatagtga caaacggaat      3240
     aacccgagac cagcatccga aaagaagaca cggtgtccct tggacagaag agcgcaagca      3300
     ggcccactca caacgaatga gggaagtctg ggctcagaga aaagccaggc tcagtgctaa      3360
     gtgcagcaag actaagtggt cctagttggc ccc                                   3393
//
ID   RTE-66_LMi  repbase;    DNA;    INV; 2415 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-66_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2415
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 161-161 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 2415 BP; 812 A; 492 C; 619 G; 491 T; 1 other;
     caactttgca acgtcatcag ggctgttcat atccgcaaaa tttccagcga aaaaacatac        60
     ataagggaac ctggatgcac cagatgggag aaatataaat caaattgacc atgttgccat       120
     tgatttaaga gccatgagct gggtattaga tgttaagaca gcacggggtg ctgaaggtgg       180
     ggtgaccatt ttctggtaag aggcctttta caagtacagt gtgaaggaag aactgggact       240
     aagttaaaaa gagttgaacg atatcatgtg gaaaaacaaa aaataaaaga tgaaaaaatt       300
     aagaccaaat atcaagtgca acttaacaac gctttgaagc actaagtgaa atggacggga       360
     atgaagacct tgaactaata tgggaaaaca tccagaaccc aatcacagat acggcaaagg       420
     aaacaattaa gggaaacgcg gttgcaagaa gatctggttt ggaaaggaat gcgaagaggc       480
     cctagagcga agaaaggaag ccaggagcaa gtggctgaaa gaggcaaatc ttgcacaggg       540
     caaagcgcag ttcgaggagg ttcgtaagac tacgcaagca cctgagaaka gcaaagagga       600
     attacattaa ggatatcatc attgaagcag aaacggactt cagaggacac aagaccaggg       660
     aaatgtttca gaaggtgaag tgcctaagca aaggtcacca ggccaagcag aaatttgtca       720
     aggattccca tgacaagatc ctgacgaacg acagcgatat agctgagaga tggaaagagt       780
     attttcaaca gctgttaaac tgtgatgaac ctgaactgca gtttgatttc cagtccccaa       840
     ttacagccga tgcagagtac cccccaccta ccctggatga gatcaaaacc agaatcaaac       900
     tccttaagaa gaataagagt ccaggtgaag atggaattca ggctgaaatg atcctggcag       960
     gaggagagaa acttgcagag agaatacacc gactgataca aacaatatgg accaaagatg      1020
     aactaccagc agaatggaaa tcagctctga tctgtccaat tcataagaag ggtgacaagc      1080
     tgaaatgtga caactatcgc ggaatcgccc tgcttaacgt ctgcgcctcc aattgcctca      1140
     tgcacagaat tcagccagtg gcagaatcag tgactgggga ataccaggga ggtttccgcc      1200
     cagggcggtc aacagcagat cacatcttca ctctcaggca gctcacagaa aaactgggtg      1260
     aatatggtaa agaactacat attttatttg tagatttcaa gaaagcctat gattgcatac      1320
     atcgcaagag cctgttcaga tgtttaaggg agtttgggat ggcagagaaa ctcatcaatc      1380
     tgataaggat ctgtctgagc gacacacatg ctaaagtgaa aatgggaaat cgtgtaactg      1440
     agggatttga aattgtgaca ggactcaggc aaggagatgg gctgtcccct attctgttca      1500
     attttgccct cgagaagatt gttcgcgaaa ccttccaaaa gaatgaaggg attgaaattg      1560
     agggaaacag actggcatac ttggcctatg cagatgacat ctgtctactc tctagctctg      1620
     aagaggagtt gaaacaaatg accacagcac taaaggaggc cgccagcaaa tttgggctac      1680
     tcatcaatga agccaagaca gagtacctcg ttatgaccca cgggcagact gctggacatc      1740
     tacagtcact gcaggtggga gacatgtcct caagagagtg cgtgaattta aatacctggg      1800
     ggcacttttc acagacaact cttcttgtga agcggagatc aacgccagaa ttcaagctgg      1860
     aaaccgatcc taccacaccc tagtgcaact gcttcgctcc aaatgtctat ccagacagtt      1920
     caaaatccga ctgtacaaaa ccctgatcca gcctgttgtg ctatatggct gtgaaacatg      1980
     gagtattcga aaacaggact tccgcaagct ccttgttttt gagagaaaag ttcttcggaa      2040
     gatctacggt ccggttttgg atgcagacac aggggaatgg aggatcaggc acaaccaaga      2100
     gcttcaggaa ttataccaac agcccagcat agcagaaacc ataaaagcca agcgtatgca      2160
     gtgggccggt catgtggccc ggatggaaga tggcaggtgg cctcagaagc tcctggattt      2220
     cgttcctgca ggaaggagac cccgaggaag accaaggaaa cgttggaggg atggcctcca      2280
     tgaagacctg aagcaagcag caatagatgt ggacaggtgg cggataacag caatggacag      2340
     gaagcattgg agacggaaac ttgtagcagc gtgcggtcca cgaggcctga tcacgtagaa      2400
     gaagaaagaa gaaga                                                       2415
//
ID   RTE-67_LMi  repbase;    DNA;    INV; 2913 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-67_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2913
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 162-162 (2015).
XX
DR   [1] (Consensus)
XX
CC   >87% identical to consensus.
XX
SQ   Sequence 2913 BP; 1169 A; 616 C; 532 G; 593 T; 3 other;
     ctctcgaagc gaaacgtaaa aactttattg gcacaataaa cgggaacacc ctcacaaaac        60
     agcaaattaa gcaattacca acgcaatggg aaaatctggc ctgaaaatgt tgcactgcag       120
     gagacgagat tcacgaatga aggacacttt aacaagagaa tacaggatct agggcaaacc       180
     tccataaata agagacagac taccattttc ggactgattc gtcgttcaca cttctcactc       240
     agttattgac ttcgcgtccc ccaatgaaag tttgtctact aataaagcta caccttgatg       300
     atatctccac aataaaatcg gccgaaacag tgaacaattt ctgggaaaca ctagtagaaa       360
     caacaaaata ccaaggcatc atgtgaaaat cttattagtc aattttgatg cacagtttag       420
     gcaaggaaat taaattcaga gataccactg gcccccacac caaacacaaa cgtaccaaca       480
     agaatggtga aaaactaatc gacttctgcg gaaactttgg actaaatcat gagtacccaa       540
     tttcaaaaac cgtgcacata aattaaccac atggagatca cccagtctta gacagggtga       600
     ataccaaatt gaccatgtcg caatttccaa ggaaaacata aaagaaattc taaacgtcag       660
     aacccgcaaa ggtatctttg aatcagatca tcatcttctc caaataaaaa attccaaccc       720
     aacacaatgc taaaaaggcc acccaaaagt accaaaccaa atccgaatac tgagactcaa       780
     cagactggaa gaaataatag aaaattcagg aagccatcaa attaggacaa ccccccaaga       840
     aacattactg gtggaacgca acctgcgatc aggcagttga caacgaataa ctgcgtggaa       900
     aaaaaaaatt tagcagccac aaaactgaag caacatttaa ctgaaaaact gggagaattt       960
     tctcaaaact caaaaacaga cctaaaaaat aattagaaaa gaaaaacggg gatatgacaa      1020
     caaaagactc tccaaaatcc agcaggattt catcaaaaat aatacaagaa atttctataa      1080
     gactttcaga gaaaacttac agggatacca agcgcctagc tttgtgcttc aagaaacccg      1140
     atggcttttt ggaaaccaac acgaaaaata actgcaaaat cttagcccaa tatttcagct      1200
     ccctcctcaa ctgcgaacca ccccaagaaa aacttgtctt cwcttctgca gttttcacac      1260
     acccagactc acttgccccg gatcccgaag aaattatgga gatagtcaaa cagttgaaaa      1320
     ataacaaagc accaggagaa gatgggatca ttgctgaatt ctggaaacta aacgatccta      1380
     tacttmtgca gaaactacat catataatgt cagacatatg gatgacggag caaataccag      1440
     cggaatggaa atgcgctcta attcacccgc tacacaaaaa gggcgacaag acagacatca      1500
     acaattacag aggaatttcc ctcctcccag tcgcttacaa aattccaagc acttttaaac      1560
     aggatagaat cccaagcaga tacactaatt ggtgaatacc akgccggatt cagaaaagga      1620
     cgatcatgtg cggaacagat ctggtgctta aagacgatat tacaaatgag gaaatgcaga      1680
     aacacagtaa ttacattcat cgacttcagg aaagcatacg attcagtgga ccatgaaacc      1740
     ctgtttaaaa taatggaaga atttgggatc gaccgaaaga cacgaaaaat cacagaacag      1800
     acacttacag gaacaacgtc caaagtgaaa ttcatgggcg aagtatcaga accctttgaa      1860
     atcaaaactg gagtccgcag ggggacggac tatccccaat ccttttcata ttgttctaga      1920
     aaaggtcatc agggaatggg aacctcgcgt aaagggcatc caaattggta taaaaaaaag      1980
     agaaccgaat taaagtcaag tgccttgctt tcgctgacga tattgcaatt atcaccaata      2040
     gcagaacaga agcgattcac gcagtggaaa aactacatga aatttcacaa aaaacggact      2100
     acagatatct tacgaaaacc caatatatgg aaagacatcc agaaaataaa tcccctttaa      2160
     tcacaaaata tggtaaaatt gcacaagtct gccattttaa atacctcgga gaaactatac      2220
     agtcctcagg attaaaccga atcgccaatg aacaaagaat caccaagctc cagaaggcct      2280
     acaagctaac atggacgcat tacaacaaga agtgcatttc gacagacgca aaattaaggc      2340
     actatagaac agtgattctt ccagaagcaa tctatgcagc tgaaacaatg gtgattgatg      2400
     gtcattcaaa aattagggaa acagaaaaga aaaattctca ggaagattta cggtgcaatc      2460
     aacaaaaacg gcatttggat gaagagacca caaaacgaac tctatagcaa gatcaacaca      2520
     gtaacagatg aaatcagaaa acgccgagcc aaattttata cacacatcta caggatggaa      2580
     gactccagaa cagcaaagaa actattcaat attataacaa agagtaaatg cggcacagaa      2640
     tggctgaaag aagtccagag ggatctacag cagatcaaca taaaaaatct cgaagaccgc      2700
     actgagtgcc ggaataaaat cacaagtgtg aagtttgagg aaagaacatc gcgccagcct      2760
     ggtaaaaaat ggacagagga acggaagaag gagcattctg agaggatgaa gagtttttgg      2820
     gaagcaaaga agaaaaacat ccgaagatga aattatgaat tcaagttcaa tcgctctcct      2880
     aaaggggaac aatcgtaata aataaaatat aaa                                   2913
//
ID   RTE-68_LMi  repbase;    DNA;    INV; 3253 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-68_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3253
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 308-308 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(336..1448,1403..3196)
FT                 /product="RTE-68_LMi_1p"
FT                 /translation="MDNYRILKGRPAIKVKKTEKTKNVVLILGTAFFIHNS
FT                 ITESIVEFRSPSPRLPVVTLASGNKLYTIFNAHAPINEDNRKNPEKVEEFW
FT                 SQLEEELFRTPDKHVKILMGDFNAQIGKERKFRNIVGKYVAHRRTNRNGER
FT                 LIDVCESFGMKIMSTQFKRAPKQMKTWRSPNPMLGEFQIDHVATTSPKEIM
FT                 NVRVQKGANFDSDHYLTRVKVKPIPGNRRRKTPRIQKYRIEELKISEEIVV
FT                 KYQHELDTLNSNEWDKMAQKIQEAAKQTIFLAKKKKHPWWDDECEDALRKR
FT                 SEAWNKWNSTKQNFEEFKTQRRTTAKVFRNAKRKFERDQLKELEENFQKNN
FT                 TRSFYQTFKSKLRGYSSPNICLKMIRANRLLITQHLFKNDQGKLIMNNKHN
FT                 CEHLARYFKELLNCDPPPEKLTFQKPQNKLPDSTPPDKKEIREIIRGLKNN
FT                 KVSGKDSIVAELLKYAGDSFLERLERLFQKIWLTGEIPEEWRDAVIHPLHK
FT                 KGDKSNVNNYRGISLLPVAYKILAIALKHRIEQHIDQQLGEYQAGFRTGRS
FT                 CAEQIFTIKTLIKTKALAADKKVIMTFVDFKKAYDSVDRDTLIEVLKEFGI
FT                 DDKTTRLIQQTLTNTRSQIKFLGELSEPFEIKTGLRQGDSLSPILFNCVLE
FT                 KVIREWRKEMSQFNFPNGIRLGRKQSGLTFECLAFADDIVFFAENLQIATK
FT                 QIEVLKETAVKAGLQISFEKTQYMNINATDPVWTMRTKYGDIKRVQRFKYL
FT                 GEILTPNNNEKAAIEERARKMEIAFRLCQNTYKSKSLSYQAKFRHYSSVVK
FT                 PECLYASETIARKGLSDLEKKERKFLRKILGPRKISNEFTFRLRSNQELYQ
FT                 RFENITTTMKKRRLSFYGHIKRMKSERLANKILLFQENRKTQVPWVKEVHR
FT                 DLEKCGITAEEIVNRQIFRKKVAEVKDFFEEKTRKNRVFSAEERARVSQRM
FT                 KEYWRKRKEENFRK"
XX
SQ   Sequence 3253 BP; 1237 A; 621 C; 696 G; 699 T; 0 other;
     ggtagggttt caccctatcc cacaatctaa acccacgcaa ctaccatgat ggcacaacta        60
     cggaaactag taccccagcc ggttcaatcc ggggccaaaa ttttggttca agtagggcaa       120
     tggattctgg gggccctaca ccatcatgtt tggatcagtc agaggatcct tcatcccgca       180
     aactcagaac gaaggagaaa catttctttg gtacacttaa cgtgaacacc ctattgaaaa       240
     ttggaaaaca aaaggaactg tcaaagtact tgatgaatac aaaataaact tctggcagtc       300
     aagaaacaag attcacaaca gatgaagtgt cagctatgga caactacagg atactgaaag       360
     gacgaccagc tatcaaggtt aagaaaacag agaaaacgaa gaatgtagtg ttaatccttg       420
     gaacggcctt cttcattcat aattctataa ctgaatctat agtagagttc agatctccat       480
     ctcctagact gcctgtagta actcttgcaa gtggaaacaa attatacacc atattcaatg       540
     cccatgcgcc aatcaatgaa gacaatagaa agaacccaga gaaggtagaa gaattttggt       600
     cacaactcga agaagaactg ttcagaaccc cagacaagca tgtcaagatc cttatggggg       660
     acttcaatgc ccagattgga aaagagagaa aattccggaa cattgtaggc aaatatgtag       720
     ctcacagaag gacaaacaga aatggtgaaa gattgattga tgtttgtgaa tcatttggaa       780
     tgaaaattat gtccacccag tttaagaggg ctccaaagca gatgaaaaca tggcgatcac       840
     ccaatcccat gttaggagaa tttcagattg atcacgtagc gactaccagc ccgaaggaaa       900
     taatgaacgt cagagtgcag aaaggtgcta attttgattc cgaccattat ctgacaaggg       960
     tcaaagtgaa accaatccct ggtaatcgga gaaggaaaac ccccagaata cagaagtaca      1020
     gaattgaaga actgaaaatc agtgaagaaa tagttgtgaa gtatcagcat gaacttgaca      1080
     cgttaaactc caacgagtgg gacaaaatgg ctcagaagat tcaggaagca gcgaaacaaa      1140
     caattttcct tgctaagaaa aagaaacatc catggtggga cgatgaatgt gaagatgcct      1200
     tacggaaacg ttctgaagct tggaacaagt ggaattctac caaacagaac ttcgaagaat      1260
     tcaaaaccca aaggaggacg acagcaaaag tgtttaggaa tgccaaacga aagtttgaaa      1320
     gagatcaatt aaaggagcta gaagagaatt tccagaagaa caacaccaga agcttctatc      1380
     agacatttaa atcaaaactt agaggttact catcacccaa catctgttta aaaatgatca      1440
     gggcaaattg attatgaaca acaaacataa ttgtgaacac ttggctagat acttcaaaga      1500
     gttgctcaac tgtgacccac caccagaaaa attaaccttc cagaaaccac aaaacaaact      1560
     tcctgattcc accccaccag ataaaaagga aatacgagag atcatcaggg gcttgaaaaa      1620
     caacaaagtg tcgggcaaag attcaattgt tgcagaactt ttgaagtacg caggagacag      1680
     tttcctggaa cgacttgaaa gactctttca aaaaatctgg ctcacgggag agatcccaga      1740
     agaatggaga gatgcagtca tccacccatt gcacaagaaa ggtgacaaat ccaatgtcaa      1800
     taattacaga ggaatatcac ttctaccagt agcatacaag atccttgcca ttgctctcaa      1860
     acatagaata gaacaacaca tagatcaaca actaggtgaa tatcaagccg gctttaggac      1920
     aggaagatcg tgtgcagagc agatctttac catcaaaacc ttaatcaaaa caaaggcact      1980
     agcagctgat aagaaagtga tcatgacatt tgtggacttt aaaaaggcgt acgactccgt      2040
     agatagagac acattaatag aagtgctgaa agaatttgga atagatgata agacaacgag      2100
     gcttattcag caaacactaa caaacacccg atcacaaatt aaatttttag gagaactgtc      2160
     agagcccttt gaaatcaaaa caggtttgag acaaggagac agtctctctc cgatcttgtt      2220
     caactgtgtt ttagagaaag ttatcaggga atggcgaaaa gaaatgagtc agttcaactt      2280
     tccaaatgga atcaggctag gccgcaaaca gtctgggctt acatttgaat gcctcgcatt      2340
     tgcagatgat atagtgtttt ttgcagagaa tctgcaaatt gcaactaaac agattgaagt      2400
     cctcaaggaa acagcagtga aggcaggatt gcaaatatct tttgagaaga cacaatatat      2460
     gaacataaat gccactgatc cagtctggac aatgaggacc aagtatggcg acatcaaaag      2520
     agttcagagg ttcaagtacc taggagagat tttgactcca aacaacaatg aaaaggcagc      2580
     aattgaagaa cgggcaagaa aaatggaaat agcattcaga ttgtgtcaga acacatacaa      2640
     atctaaatca ctctcatacc aggccaaatt ccgacactac agctcagtcg tcaaacctga      2700
     atgtttatat gcatctgaga caatagccag gaagggactt tcagacttgg aaaagaaaga      2760
     aaggaaattc ctaagaaaga ttctggggcc cagaaaaata tcaaatgaat ttacgttccg      2820
     cctaagatca aatcaagaac tttatcaacg atttgaaaat atcaccacca caatgaagaa      2880
     aagaagactg tctttctatg gacatattaa aagaatgaaa tcagagaggc tcgccaacaa      2940
     gattcttctc ttccaggaga acaggaagac acaagttcca tgggtgaaag aagtgcacag      3000
     ggacctagaa aaatgcggga tcacagcaga agaaattgtg aacaggcaga tctttaggaa      3060
     aaaggttgcg gaggtgaagg atttcttcga ggagaaaacg aggaagaaca gagtattctc      3120
     ggcagaagaa cgtgcacgag tgagccaacg gatgaaggag tactggcgaa agaggaagga      3180
     agagaacttt agaaagtgag ggaagttgtg taaacgtaac ccatagatgg ctgtaacgaa      3240
     aataaataaa aaa                                                         3253
//
ID   RTE-69_LMi  repbase;    DNA;    INV; 2320 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-69_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2320
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 163-163 (2015).
XX
DR   [1] (Consensus)
XX
CC   >88% identical to consensus.
XX
SQ   Sequence 2320 BP; 790 A; 425 C; 588 G; 517 T; 0 other;
     gatattcata agcagtaaaa acttccaacg taaggttaca caaagaactt gggtacgtca        60
     gatggtaaaa cagttaatca gattgaccac attgcaaaga cataaagcaa agaattagta       120
     gggatgtaaa gacaggaagg ggcagaggcg gatgatcatt tcccagtaaa cagctgcaaa       180
     tcaccgaaac aaccttacaa agttgtacac taccacattg agtctgaaag ataccacaaa       240
     gaaagaagaa tttcagctcc agctcagcaa ctatttgaaa tctcaggaag agtttcacaa       300
     aagaacccga tgaaatgtgg caagaagtta aggatgccgt aattgaggtg gaaatgtagt       360
     cataagaagc ggatcagagg caaaaagatt tggtttgggg atgaatgcat tgaggcatta       420
     gccaagagaa gagaagccaa ggagagctgg ctgcaagggg ctgattttgt acaaggcaaa       480
     gcacagttcg aagaagttcg gagaactact caagcaaccc tgagaagagc aaagagaatg       540
     tatgttaaag gaatgataga cgaggctcaa caagatttct tggggaaaga ggcacgaaag       600
     atgtatcaga aagtaaaatt cttcaagaag ggataccata gccaccaaaa actcatcaag       660
     gacaataatg ggaccatact caccaatgag ctgaacattg ctgagagatg gaaacaatac       720
     ttcagggaac tcctcaactg tgatgaccta agatctgttt gattttcagt ttcctgacat       780
     ttagatttag actatcctcc acccaactgg ggaaaaatca gcccaggaac gatgaaccag       840
     gcagaaataa ttcaagctgg aggggaggga ctacacaaga aaattcacca attaatcaag       900
     gggtctggat tttggaggag atcccagaag attggaagac agccgtcatc tgtcctatac       960
     acaagaaagg tgacaaaatg aactgcacta actacagagg aatcgcccta ctgaatgtct      1020
     gctacaagat cttgtccaac tgtatactgg atagaataca gccgttttca gaagaagtga      1080
     ttggtgaata tcaggggggg attcagaaag ggacgttcga ctgtcgataa catctttgtg      1140
     ctgcgacaac tcaccaaagt tttgggagta tggcgaagat cttcatgtgc tcttcataga      1200
     ttttaagaag gcgtatgact gcatcctccg ggagagcctg aggaactgcc taacggagtt      1260
     tggaatacct aagaaactcg tcagcctagt tggaatttgt ctcactgact caaaaggcaa      1320
     agtgaagctc gggaaccatc tcacggagag ctttaacata aacacagggt tgagacaagg      1380
     agatggtgtg tcaccaatat tgttcaacct gacattagaa aagataatga gagaagtctc      1440
     tcgtaaaaat ttcaagggta tagaggtaga tggtgagaaa atgacacatc tcgcgtttgc      1500
     tgatgatgtg gccctgttgt ccagatctaa ggaggaactg atgcagatga gtgaaagcgt      1560
     ggagacggaa gcaagcaaaa taggactttt tgtaaacgaa tcaagacgga atatctggtg      1620
     atgagcagga ctcatgcgta tgcaagagac ccactccagc ctctgacagt tggaacccga      1680
     tcctacaaaa gggttcgtga ttttaaatac ctgggggtaa tctttacaga agatgcagca      1740
     tgtgaagcag aaataaaagc gaggatccaa gccggaaacc gatcgtactt tggtctcagt      1800
     caacttcttt catcgcgtgg tctctcgagg aattttaaac tccagctgta taaaacaatg      1860
     attcaacccg tagtactgta tggttgtgaa acttggagtg tccggaaaaa atacttgaac      1920
     aatcttctag tttttgagag gaaagtctta aggaagatct ttggtccgct gcaagatgag      1980
     atcactggag aatggaggat cagacataat tgtgaactag acgaaatgta caatagacca      2040
     aacattgtag gactgatgag aaccaagcgc cttgcatggg caggacatgt cagtcggatg      2100
     gataaatgcc gatggccttt gaaatctatg gattatactc cctgtggaag acgcccacta      2160
     ggaagaccaa agaagagatg gagggatgga atccgtgagg acttgctgca gatcggaata      2220
     gagaatgact ggcgtcagaa agcacaaaac agaacgcagt ggaggaggaa ccttgtagct      2280
     gcgtgcggtc ctctgggcct gatcgcgtaa agtaagtaag                            2320
//
ID   RTE-6_BM    repbase;    DNA;    INV; 1556 BP.
XX
AC   .
XX
DT   15-OCT-2011 (Rel. 17.08, Created)
DT   15-OCT-2011 (Rel. 17.08, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-1556
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 12(8), 1640-1640 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1544
FT                 /product="RTE-6_BM_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="AEHLKDEVRAAIKHLKKGKATGKDAIPIETIEASGEY
FT                 GVEISHTLCNKIWQSGTWPQDWVHTVFVPLHKKGSTKSCSNYRLIALIPHA
FT                 CKILLRIVNERLKSYLSKEIAPEQAGFVKGKGTREQILTVRQIIEKSREFN
FT                 KPTYLCFVDFSKAFDSVKWPKLWETLLAMGTPKHLVHLLRRLYEEGTASVR
FT                 IDDILSRHFHXSAGVRQGCIISPLLFNIIYTELIMRIALENWSDGITIGGR
FT                 KISNLRYADDITLVASGVSQMEELLGRVERVSLDFGLKINRNKTSVMIVDR
FT                 ANNNSPEVTKIANCDVVQSYIYLGALISNTGGCVDEIKRRMAVSRSAMDRL
FT                 KKIWGNRNITKATKIRLVRALVFPIFLYAAETWTLRESEKKRIDALEMWCW
FT                 RRMLQISWTEFRTNQSILQELGIKQRLSSIVQGRILTFFGHVSRRGDDSVE
FT                 RLVVQGMIEGTRPRGRSPLRWTDQIKAALNGPVNECTRRAAVREEWRRLVK
FT                 RTTTRSDDHDHSAKSACD"
XX
SQ   Sequence 1556 BP; 453 A; 345 C; 396 G; 360 T; 2 other;
     gagccgagca tctwaaggat gaggttaggg ctgcaataaa acatcttaag aaagggaaag        60
     ccacagggaa ggacgccatt ccaattgaaa cgattgaggc atctggggag tatggcgttg       120
     aaatttccca taccctgtgt aataaaatat ggcagtctgg aacttggccc caagactggg       180
     ttcatactgt tttcgtccca ctgcataaaa aaggctcgac aaaaagctgc agcaattacc       240
     gtctcatagc gttgattcca cacgcatgca agatattgct gcgtatcgtt aacgagcgcc       300
     ttaaatcgta cctctctaaa gaaattgctc ctgaacaggc cggctttgtg aagggtaaag       360
     gtacacgaga acaaatatta accgttcgac agatcatcga aaaatcccgg gaattcaaca       420
     agcctacgta cttatgcttt gtggatttct ctaaggcgtt tgattctgtc aaatggccaa       480
     aactttggga aactcttttg gccatgggta cccccaaaca cttggtccat ctgctgaggc       540
     gactctatga ggaaggaaca gcttcagtta gaatagatga cattctatcg cgtcacttcc       600
     acmctagcgc aggagttcgc caagggtgta ttatatcacc gctcctgttc aatataatat       660
     atacggagct tataatgaga atcgccctcg aaaactggtc ggatggaata actatcggag       720
     gtcggaagat ttcaaatctt cgttatgcag acgacatcac tttagtcgcg tcaggtgtca       780
     gccagatgga agagctactc ggtagagtgg aacgcgtcag tcttgatttc ggacttaaaa       840
     ttaaccgcaa caaaacaagt gtcatgattg tcgaccgtgc taataataac tcgccagagg       900
     tcacaaaaat tgcgaactgc gatgtcgtac agtcatacat ttacttaggt gcactgatat       960
     cgaacactgg cgggtgcgtt gatgaaatca agcggcgtat ggctgtttcg aggtcagcca      1020
     tggacaggct gaagaaaata tgggggaatc gaaatatcac caaagccact aaaatcagac      1080
     ttgtaagagc gctggtcttc cccatttttc tttatgctgc tgagacctgg acattgagag      1140
     aaagtgagaa aaagaggata gatgctctcg aaatgtggtg ctggagaaga atgctgcaaa      1200
     tatcgtggac ggagttcaga acgaatcagt caattctaca ggaactcggc atcaagcagc      1260
     gactatcctc catcgttcag ggtcgcattc tcactttctt cgggcatgtg tcgcggcggg      1320
     gtgacgactc agttgagcgc cttgtggtgc agggcatgat agagggtaca agaccgcgcg      1380
     gcagatcacc gttacgatgg accgaccaaa taaaggcagc tctaaacggt cccgttaacg      1440
     agtgcacaag aagggccgcg gtacgcgagg aatggcgacg tctggtgaag cgcaccacca      1500
     cccgaagtga tgaccacgac cactctgcca agagtgcatg cgactgagaa gaagaa          1556
//
ID   RTE-6_DPl   repbase;    DNA;    INV; 2171 BP.
XX
AC   .
XX
DT   07-FEB-2013 (Rel. 23.01, Created)
DT   07-FEB-2013 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-2171
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 130-130 (2018).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..209,166..387,378..908,886..1170,1174..1491,
FT                 1605..2168)
FT                 /product="RTE-6_DPl_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="QLKTPSHEKVLYILTYNVRTLLLHERLIELEKALTNI
FT                 KYDIIGISEVRRLGNNIRIRGIHSXQYRSNAXEYEEFILCSTGQTQXKYGV
FT                 GFIIKKYLKQYVESLHRNXGTRXPTKSEHARKEIHRHTSIRPNRSSRCRTX
FT                 KYFLIFSMIPSMRQWIKHTKNFILMGXFXXKIGKPQKDEYLIMKQYGYGTR
FT                 NPRGQRLIDFAMENKLXIINTFXKKKDKRKXTWQSXTGHKNEXDFMLSNHP
FT                 HSFQNIXTLSTNFTSDHRPLXAKISLTKPVKTRXRFVNKQNSSLXNEEEIQ
FT                 IYKENLETKIISLLNTETNVTXSTGLLRXTVQDYYDKMINNIIDXLQAART
FT                 PHSTNMRSVLTKXTERLLKRRQELQRTKNKTXTXKNELKALYKLLSKYIKK
FT                 DYKNHITNILQKPLYIIFIDYTAFDTISHESIWNTLKAQNVEQQYIAILKH
FT                 LYSNCSSRFELETIGPSFPVKRGVRQGEPLSPKTSIAILESIINKLDWRKC
FT                 DLYNQCKYLNYLRFAGDLLLLSESSIMWKVYIFRKKIGFHRDSNELEVERR
FT                 VKQTWKKYWSYKEIFKSETPIKLKKKVMDLCLIPCLTYACQTWKCTNKVKN
FT                 KIITCQRGMERSMLNIKKVQKINHSKIRSKTKAIDAISYSQKLKWKWAGHI
FT                 ARLKDQRWTKTLTLWKGPLGKRYRGRPYARWNDDIKKIAGPQWHQIAQDRE
FT                 KWKALEEAF"
XX
SQ   Sequence 2171 BP; 915 A; 394 C; 363 G; 472 T; 27 other;
     aacaattaaa gaccccctct cacgaaaaag tactctacat attaacctac aatgttagaa        60
     ccctgctatt acacgaacga ttaatagaac tggaaaaagc attaacaaac ataaaatacg       120
     acataatagg tatttcagaa gttcggcgcc tcggaaataa tataagaata cgaggaattc       180
     attctstgca gtacaggtca aacgcaakgt aaatatggag ttggtttcat wataaaaaaa       240
     tatctgaaac aatatgtgga aagcctacat cggaatstcg gaacgcgtag mcctactaaa       300
     tctgaacatg ccaggaaaga aattcaccgt catacaagta tacgccccaa cagaagcagc       360
     agatgtagaa caastaaata ttttctatga taccgtcwat gaggcaatgg ataaagcata       420
     cgaagaactt tattttgatg ggtgawtttg awgscaaaat tggtaaacca caaaaagatg       480
     aatacttaat aatgaaacag tatggatatg gaacaagaaa cccacgaggt caaagactta       540
     tagattttgc aatggaaaac aagctwmcta tcatcaacac ctttwawaag aaaaaagata       600
     aaagaaaawg gacatggcag tctcsgacwg gtcataaaaa cgaaawagat ttcatgctgt       660
     caaaccatcc tcattcattt cagaacattg waacattaag tacaaacttt acatcagacc       720
     accgaccact cakggccaaa atatcactca ctaaacctgt gaaaacacga astaggtttg       780
     taaataaaca aaacagttca cttmaaaacg aagaagaaat acaaatttat aaagaaaact       840
     tggaaactaa aattatatct ctactcaaca ccgaaactaa tgtaacamac agtacaggac       900
     tactacgata aaatgataaa taatataata gacascttac aagctgctag aactccacat       960
     tcaacaaaca tgcgcagtgt gctcacaaaa awcacagaaa gacttttaaa acgaagacaa      1020
     gagttacaaa gaactaagaa taaaacacka acaawgaaaa acgaactcaa agctctttat      1080
     aagttattaa gtaaatatat aaaaaaggac tataaaaacc atataactaa catcctacaa      1140
     aaaccgctgt atatcatatt catcgactac taaacagctt ttgacacaat ctcacacgaa      1200
     agtatatgga acacgctaaa agctcaaaat gtcgaacaac agtacatagc aatactcaaa      1260
     cacctataca gtaactgctc aagtagattc gaattggaaa ccattggccc aagctttcca      1320
     gtcaagagag gagtcaggca aggagaaccc ctatccccaa aaacttctat tgcgatattg      1380
     gaatctatca ttaacaaatt agactggaga aaatgtgatt tatataacca gtgtaaatac      1440
     ttaaactact tacgatttgc aggcgacttg cttttactat cagaatcgag ctagatactc      1500
     tacatacagc aagcagacaa tgggattaga aatcaatatc acaaagacca aactcatgac      1560
     caacttcaaa aaatcaaaga taacaatcga aaatgaacca ttagattatg tggaaagtat      1620
     atatatttag gaaaaaaatt ggattccaca gagatagcaa cgaactggaa gtagagagaa      1680
     gagtgaaaca aacttggaaa aagtattgga gctataagga aatatttaaa agcgaaacgc      1740
     ctatcaaatt gaagaaaaag gtcatggact tgtgtcttat tccttgtttg acgtatgcat      1800
     gtcaaacctg gaagtgtacc aataaagtaa agaataaaat aattacatgc cagagaggaa      1860
     tggaacgtag tatgctgaat atcaagaaag tacagaaaat aaatcactcc aaaataagat      1920
     ccaaaacaaa agcaatagat gcaatcagct acagccaaaa actaaaatgg aaatgggcag      1980
     gccacatagc gcgcctaaaa gatcaaagat ggacaaaaac acttacgtta tggaagggcc      2040
     cattaggcaa gcgatacaga ggaagaccat acgctagatg gaacgacgat attaaaaaga      2100
     tagcgggacc acaatggcat caaatagccc aagatcgcga gaaatggaaa gctttggagg      2160
     aggcctttac c                                                           2171
//
ID   RTE-6_Hmel  repbase;    DNA;    INV; 2401 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2401
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           2..2242
FT                 /product="RTE-6_Hmel_1p"
FT                 /translation="PNGRYKNEIDYVMSNDVKVFEDLSILSNFNFNTDHRM
FT                 VRAKLSGTCAKKARQFHNNMKAIKCTGNINILLNNLETSLQAVENGKENIS
FT                 TQXKYTRLIKQLKSETKKXNMTSKIATSCISKQLLQERKELLQGXNKNYYN
FT                 RHKIAELSKKINEQLRKERKTKRLATLKRHIEKTGGIKKALKEMNYKKDWI
FT                 LHMKNKNSKTTNNRPEILQIATEYYQNLYQSHNGEHVIKEDTSLNEEEITP
FT                 ILKEETIKSIQTQKLDKAPGSDLITNELLKTALPVLASRLTELFNEILQTE
FT                 TIPEDWTKSTIILLHKKGDKDDIGNYRPISLMSNIYKIFSKIILKRITNTL
FT                 DLNQPKEQAGFRSKFSTIDHIHTLRQILQKYREYNKTYYIGFVDFNKAFDT
FT                 LKHEYIWDALKKQGVQEKYIRIIKNVYTASTAQVQLESMGKEFPIRRGVRQ
FT                 GDPISPKLFSAVLEMIFRNLNWTKRGLNINGENLNNLRFADDLILFSEDAG
FT                 TLGLMLQQLSDESAKAGLTMNLIKTKIMTNAQQTVTNEKIIVNNESIEYVK
FT                 EYIYLGQLISTDDCMKKELERRITNSWKRFWSLREIMKDKDMPMKGKKKIF
FT                 EICIMPCLLYGCQTWALTEAQESKLKVCQNAMERSVLGIKRKDRVNLREIK
FT                 KKTNFKNVHTTYRQLKWRWTGHMLRESKEKWTKLVTEWYPRNSKRNKGRQP
FT                 KRWEDDIKKIAGPVWTRLAKDRKIWNSLEEAFVDRQAVSHKYLVADE"
XX
SQ   Sequence 2401 BP; 1055 A; 362 C; 412 G; 564 T; 8 other;
     tcctaatggg cggtataaaa acgagatcga ctatgttatg tctaatgatg taaaagtttt        60
     tgaagacctg tctattttaa gcaactttaa ttttaacaca gatcatagaa tggttagagc       120
     aaaactctca gggacatgtg ctaaaaaagc acgacaattt cacaacaata tgaaagccat       180
     caaatgcact ggtaacatta atatacttct aaacaacctc gaaacctcct tgcaagcagt       240
     ggaaaatgga aaagaaaata tatcgactca arataaatac accagattga tcaarcaact       300
     aaaatcagaa acaaagaaag yaaacatgac aagtaagata gcgacatcat gtataagtaa       360
     gcaattatta caagaacgga aggaactatt acaagggara aayaaaaatt attataatcg       420
     ccacaagata gcagaattaa gcaaaaagat aaacgaacaa cttagaaaag aacgaaaaac       480
     aaaaagatta gcgacattaa agagacatat agaaaaaaca ggaggaataa agaaggcgct       540
     aaaagaaatg aattacaaaa aggactggat tctacatatg aaaaataaaa atagtaaaac       600
     aacaaacaat agaccagaaa tactacaaat tgctacagaa tactaccaaa atttatatca       660
     aagccataat ggagaacacg taataaagga agatacgtca ttaaatgaag aggagattac       720
     accaatttta aaggaagaaa caataaaatc tattcaaaca caaaaaytag ataaggcacc       780
     aggatcagat ttaatcacaa atgaactact aaaaactgca ttaccagtgt tagcatcaag       840
     acttacagaa cttttcaacg agattctcca aacggaaacc atcccggaag attggactaa       900
     atccacaatc atactgcttc ataagaaagg tgacaaggac gatataggaa actacaggcc       960
     gatcagtcta atgtccaata tttataaaat attctcaaaa ataatactta aaagaattac      1020
     taacacatta gatttaaatc aacctaaaga acaagctggt ttccgtagta aattctcaac      1080
     tatagatcac attcacactc taagacaaat actacagaaa tacagagaat ataataaaac      1140
     gtattacata gggtttgttg attttaacaa agcattcgat acattgaagc acgagtatat      1200
     ttgggatgct ttgaaaaagc aaggrgtgca agaaaaatac atacgaataa ttaaaaacgt      1260
     ctatacagcg agcactgcac aagtccaact tgaatctatg ggcaaagaat ttcctataag      1320
     aaggggtgta cgccaaggag accctatatc tcccaaatta ttttcagcag tgctggagat      1380
     gatcttcaga aacctaaact ggaccaaaag aggcctaaat ataaatggcg aaaacctaaa      1440
     caatctacgt tttgcagatg atttgatttt gttctcagag gacgctggaa ctctggggtt      1500
     aatgcttcag caactatctg atgaaagcgc taaggcagga ctgacaatga atctaattaa      1560
     aaccaaaatt atgacgaacg ctcaacaaac tgtaactaat gaaaaaataa tagtaaataa      1620
     cgaaagtata gaatatgtaa aagaatatat atatttgggc caactgatat ctacagatga      1680
     ttgcatgaaa aaggaattag aacgaagaat aacgaattct tggaaacgat tttggtctct      1740
     tagggaaata atgaaggata aagatatgcc aatgaaagga aaaaagaaaa tatttgaaat      1800
     atgcattatg ccatgcttac tatacggttg ccagacatgg gcgttgacag aagcacaaga      1860
     aagcaaatta aaagtctgcc aaaatgcaat ggaacggagt gttttaggta taaaaaggaa      1920
     agacagagtg aacttacgag aaattaaaaa gaaaacaaat tttaaaaatg tacacacaac      1980
     ttacagacag cttaaatggc gttggactgg acatatgtta agggaaagta aagaaaaatg      2040
     gactaagtta gtaaccgaat ggtacccaag aaacagcaaa agaaataaag gcagacaacc      2100
     aaaaagatgg gaagatgaca tcaaaaaaat agctggtcca gtatggaccc gtctagcaaa      2160
     agacaggaaa atatggaact ctttagagga ggcctttgtc gacagacaag ctgtttcaca      2220
     caaatatcta gttgccgatg aataaacawa aaaaaacaaa caaataaaat aaaattaatt      2280
     agattattat tattgaaaat attgatatta attattaaaa atcaatttag tttatagaaa      2340
     aggcaagtta tatattaatt gtaaagaaca gcaataaagg ctattttatt ttattttttt      2400
     a                                                                      2401
//
ID   RTE-6_HMM   repbase;    DNA;    INV; 4352 BP.
XX
AC   .
XX
DT   15-FEB-2013 (Rel. 19.10, Created)
DT   15-FEB-2013 (Rel. 19.10, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-4352
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from Postman butterfly.";
RL   Repbase Reports 14(10), 2817-2817 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 5' is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1118..2095,2014..4038)
FT                 /product="RTE-6_HMM_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="IINEPILPIRPVTVEDQDQNPPKLPKLKCNNKLYIIT
FT                 YNVRSLSSYERLLELNEALKEIKYDIIGLCEIRRAGNKIEEYKNFILFHTG
FT                 FKSAIYGIGFLVNKNLKNNIESYIGFTERVALLNIKLDEVQMSIIQVYAPT
FT                 EKASEEEVEKFYMTINEAVKSAHKLYILMGDLNAKIGHPKQEEYLITKPNG
FT                 YGTRNTRGQRLIDFAIENKLAILNTYFKKKTKNKWTWQSPDGKYKNEIDFI
FT                 LSNTPQIFENIEVLNINYPTDHRAVRGTIKLKYVKKSRNQYKSQCAALKNE
FT                 DEIKKYKESLMSYKSHYRLDLQKIHLYKHITTTYRKSHVLQISLSSRFTKN
FT                 PSIQTYYDNLLNIITKSLHAAGNTHKIAGFKPKIMSERTLTLLKRRQELQK
FT                 TKYKTRAMKNKLAALYKLASKYIKKDYTDHRYNTIHKHLKQTGSTKKAYKE
FT                 LRTNKTWIDGLNRKGTRSYNRRDIISTATDFYKSLYRAQAPSHDNNYLDNN
FT                 SVMTNTNDIPRIEVSEVESTLLHLKTDKSPGSDYITNEALKIGSKTLALPL
FT                 TDLFNGILKSGVTPTQWSESDIILLYKKGDPNDVGNYRPISMLPSIYKLFS
FT                 SLINQRISKTLDASQSVEQAGFRKGYSTVDHIHTLELLIQKYQEMRNPLYI
FT                 AYIDYQKAFDTVSHDSIWHSLTTQKVEDKYIKVIKSIYGKCKSRIKLETVG
FT                 PWFPVERGVRQGDPLSPKLFIAILESIINQLDWKKSGLKIRNEYLSHLRFA
FT                 DDLVLFSESGSELQSMIKSLNDASKKIGLEMNKTKTKLMTNSTEIDITVEG
FT                 IPLKYTEQYIYLGKQIGFERISNDLEVERRVQLTWNKYWGLKEIFKSKMSV
FT                 EIKTHVLNTCLLPCLLYACQTWKFNTKTKRKILTCQRGIERSMLSIKKMQK
FT                 IRHTKIRNVTKSTDGLVKALSLKWKWAGHVARLQDHRWTKKVTAWPGPHGH
FT                 RRKGRPHARWEDDIIKTAGINWTQKAQSREYWASLEEAFTCTGVLA"
XX
SQ   Sequence 4352 BP; 1848 A; 736 C; 719 G; 1042 T; 7 other;
     ccactgtgcc acggttcgca tcgttctctg tattactgta cgttttaaaa attgattacg        60
     agttgatagt cagcggaaag aagacaaccg ttggaagata ccaagataca caagatatat       120
     tgtggatacg atcaaacaac cagtgaaaga cgtgatatag tggaaacaaa aaacgaccgt       180
     tagtgtgttt tatcttgtga cattttttwa aaaaatacag catttaaagt gatctaactc       240
     atgaactgtg tctagtgcaa actaaatata aagtttgtgg astatacaag gaaatacata       300
     aataaaaaag tgctttataa ataaatcgat aaatttcaac aactctctaa gcacccaacg       360
     ccatcttctg gaaggaatta gaaccaagtg atatataatc ctccgataaa gtttgttatt       420
     kggtaccagt tttcgaaatc aagtcacaag aggtcgcttt taaacattat agaaacttat       480
     gggattttgt tattgcaaat atttcccaaa ttaaaataaa ataaaataaa tatttaaact       540
     cataaacatg gaagaagtct taagcgctct acgaaaaatt caaagcgaac tcgacgagca       600
     caaaactatg attttaaaaa atggaaaaca agtaacagaa caagttacac agaacattaa       660
     cagcatatta gatgaaaaaa taaawcctwg ggaagaaaag cacgagcacc ttaaaattga       720
     actggatagt caagaaaaaa gaatatattt cctggaaaaa caatcaagac aaagaaatat       780
     cgtgttattc ggtctagaag aaaatgaatc gtcatattca aacttagaaa atatcttaat       840
     tagttttatt gataagcact tcaatgtaaa agtcgatcag agggacatac aggaagctag       900
     aagaataggc aaaaaaggag ataaacctag accaataaaa atcacacttt taacacttgg       960
     cattaaaata aawattctaa aacaaaagaa aaagctcaaa aatactccat actatataaa      1020
     agaagamtac ccagagcata ttttgaagaa acggagagaa ttacaagagc aagtgaggat      1080
     tgaaaaagaa aaaggaaact cagcaatcat tgtctaaatt attaacgagc caattcttcc      1140
     aatccggccg gtcaccgtgg aagatcaaga ccaaaaccct ccaaagttac caaaactaaa      1200
     atgcaacaat aagttataca taataacgta caatgtcaga tctctatcat cttacgaacg      1260
     cctgctagaa ctaaatgaag cactaaaaga aataaagtat gacataatag gcttatgtga      1320
     aataagacgc gctggcaata aaatagagga gtataaaaat ttcattctgt tccataccgg      1380
     atttaagtct gcgatatatg gtattgggtt tttagtaaac aaaaatctca aaaacaatat      1440
     cgaaagctat attggattca ccgaaagagt agcactacta aatatcaaat tagacgaagt      1500
     gcaaatgtcc attatacaag tctatgcacc cacagaaaaa gcaagcgaag aagaagttga      1560
     aaagttctac atgacaatta acgaggcagt aaagtcagca cataagctat atattcttat      1620
     gggagaccta aacgctaaaa taggacatcc caagcaagaa gaatatctta tcacaaagcc      1680
     aaatggatat ggaacaagaa acacaagagg acagagattg atagatttcg ccattgaaaa      1740
     caaactcgca attttaaata cttattttaa gaaaaaaact aaaaacaaat ggacctggca      1800
     atcaccagat ggcaaatata aaaacgaaat cgacttcata ctatcaaaca caccacaaat      1860
     ctttgaaaat atagaagttt tgaatataaa ttacccaact gaccacaggg cagttagagg      1920
     tacaataaag ttaaaatacg taaaaaagag tcgaaatcaa tacaaaagtc aatgtgccgc      1980
     cttaaaaaac gaagatgaga taaaaaaata taaagaaagt ctcatgtctt acaaatctca      2040
     ctatcgtcta gatttacaaa aaatccatct atacaaacat attacgacaa cttactaaat      2100
     ataatcacca aaagcttaca tgccgcagga aatactcaca aaatagccgg tttcaaacca      2160
     aaaattatgt cagaacgtac gttaacttta ctaaaaagaa gacaagagct tcaaaaaaca      2220
     aaatacaaaa ctcgagcaat gaaaaacaaa ctcgcagctc tatacaaatt agcgagcaaa      2280
     tacataaaga aagattatac cgaccacaga tataacacta tccacaaaca tctaaagcaa      2340
     acaggaagca caaaaaaagc ttacaaagag cttaggacga acaaaacctg gattgatggt      2400
     ctaaatcgta agggtactag gtcatacaat cgtagagaca taatctcaac tgctactgat      2460
     ttctataaga gcctttaccg tgcacaagcg ccttcacatg ataataacta tctagacaat      2520
     aattctgtaa tgaccaacac aaatgatata ccaagaatcg aagtgagtga agtcgaaagt      2580
     acgttgctac acctaaaaac agataaaagc cctggatcgg attatattac aaatgaagca      2640
     ttaaaaatag gctccaaaac gcttgcttta ccactgacgg atcttttcaa tggtattttg      2700
     aaatctgggg taactcccac tcagtggtca gaatcagata ttattttatt gtataaaaaa      2760
     ggcgatccaa acgacgtagg aaattataga ccaattagca tgttaccaag tatttacaag      2820
     ctgttctcct cattaataaa tcagagaatc agcaagacat tggatgcaag tcaatcggta      2880
     gaacaagcag ggttcagaaa aggctattcc acagtcgacc atatccacac tctagagcta      2940
     ctaatacaga agtatcaaga aatgagaaat ccactctaca ttgcctatat agactaccag      3000
     aaggctttcg atacagtttc acatgacagt atatggcatt cactgacaac gcagaaggtg      3060
     gaagataaat atatcaaagt tattaaaagc atatatggaa aatgcaagag cagaataaaa      3120
     ttagaaacag tagggccttg gttcccggtc gaaagaggag taagacaggg agaccctctg      3180
     tcaccaaaac tattcatagc aatactagag tcgatcataa accaactcga ttggaaaaaa      3240
     tccggtttaa aaattagaaa cgaatactta agccacttaa gatttgcaga cgatcttgtc      3300
     ctgttttcag agtcaggctc agaactacaa agcatgataa aatcactcaa cgatgcaagc      3360
     aaaaaaattg gtctggaaat gaataaaacc aaaaccaagt taatgacaaa cagcacagaa      3420
     atagatataa cagtagaagg aataccgctt aaatatacag aacagtatat atatcttggc      3480
     aaacaaattg gtttcgagcg aataagtaat gacctagagg tggagcgacg agtacagctt      3540
     acgtggaaca aatattgggg cttaaaagaa atatttaaga gcaaaatgtc agtagaaata      3600
     aaaacacatg tcctgaacac ctgccttttg ccatgcttat tatatgcttg ccagacttgg      3660
     aagtttaata caaaaacaaa aagaaaaata ttaacttgcc aaagaggtat tgagcgcagc      3720
     atgctaagca tcaaaaaaat gcaaaaaata agacacacaa aaataagaaa tgtaacaaaa      3780
     tctacagatg ggctagtaaa agcactatca ctaaaatgga aatgggccgg ccatgtagcg      3840
     cgcctacaag accatagatg gacgaaaaaa gttacagctt ggccgggacc acacggacac      3900
     cgtagaaaag ggagacccca cgctaggtgg gaagacgata taattaagac agctggaata      3960
     aattggacac aaaaagccca gtcaagggaa tactgggcat ctttggagga ggccttcacc      4020
     tgcacagggg ttcttgcata acattcataa ataacataaa taaacagaaa gtaaaaatat      4080
     gaataaataa atcaaaataa taatttcgac aatatatata tatatataat aagaagaaaa      4140
     atatatagta aataaaaaaa ataaataaat aaatatatat atagaataaa agaactgaga      4200
     aagtaaaatt aacaaaacta atcaattata tactaacttc aatactaaca tctactgaaa      4260
     aaattttgta tttttatttt atgaaatgta ctactaacta agaagcaaga aataaaaggc      4320
     tttttatttt tattttattt tatttattta tt                                    4352
//
ID   RTE-6_LMi   repbase;    DNA;    INV; 3329 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3329
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3467-3467 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(343..1314,1321..2994)
FT                 /product="RTE-6_LMi_1p"
FT                 /translation="MALLSSKLDSGASSPPVGSPGGTGLREVTKPTLSLHI
FT                 VRKIATWNVRGLMQIGKLAIVEREMALHGLDILGLSETHWRGSGHFVTQER
FT                 NTVYFSGSSDQSKNGVAVVVPRNLSNCVVGYEPINDRIISIKLDASPCKLN
FT                 VIQIYAPTAAASDEEMEKFYNQLEQVXNKIPTKEQTIIQGDFNAKVGDTTQ
FT                 DSHLRSVVGLYGLGERNERGRSLLDFCVSNDMSICNTMFQHHPRRLYTWIS
FT                 PGDRYRNQIDFILVRRRWKTSVLDCKTFPGADCGSDHILLSMKMRIKLKST
FT                 KKTDERQLRLTSKESIRKFGELVREKLHQNQFRSTSITNMGPNEERCFFVT
FT                 TDIRTIAECKTSLDIKSTLQLIEERSHLKKTGIHTTQDQDRYKNLCRVIQR
FT                 NCRKDKADFINGICNEIEQHHNRNQVRDLFKKIKSITGEFNPRTWVIDDEK
FT                 GNPIGDKEDVVARWKQYCEKLYSGINDSTDNQTVEQLNLEPTILRSEIENA
FT                 IQHLKNYKAPGVDGISGEMIKEMGQEGIDALHSLCKRIWETGEWPDDWSKS
FT                 LFIPLHKKGSIRNCSNYRTIALISHASKILLYILNQRLKPYIQPHISSEQA
FT                 GFVEGKGTREQILNVRQIIEKSREFCVPVFICFLDYRKAFDCVVWEKLWQV
FT                 LAEIGVPPHLTALIKNLYNDHSAVVKTSAGTSDSFRVSKGVRQGCVLSPQL
FT                 YNIYAEHVIRKALDGWTKGISIGGRTVNNLRFADDTVLLANSEDELAELLT
FT                 RIKDISLAYGLDINLSKSKLMLIDREQQIQLTGQLKELEVVQSFTYLGSTI
FT                 CSTGSCEEEIRRRITLGRVAMKKLTKIWQSRAITNSTKIRLVETLVFSVFF
FT                 YGCEHGHSRPETNSALMRLSFGAGVGCYA"
XX
SQ   Sequence 3329 BP; 1072 A; 705 C; 781 G; 767 T; 4 other;
     ccgccattgc cggtcgcaag cctggggcct catctcacag tgatgaggaa ggaggagcgg        60
     gaggagtatc aacctcgtta aaaaaccagg gtccttctgg ctccggaagg tagcaccctg       120
     tcatagggcc cctagccagg gtaacggtga agacctcaac ggcatctgcg gcggagaaga       180
     tggacttcgg aacggcgtcg atggcggaag aggcaaacct gtagtgtctg tactccagag       240
     gagcggctac aaaaggcgtc tgactccatg ttaggggcgg cctcatttaa acagtggaag       300
     gcaacgggaa accaccactg atactwttcc catgagaacc ccatggcttt gctcagttct       360
     aaattagatt ccggagcttc aagtccccca gtcggatctc cgggggggac aggattgaga       420
     gaagtcacta aaccaacatt atccctgcac attgtaagaa aaattgcaac atggaacgta       480
     cgtgggctaa tgcagatagg aaaacttgcc atagtagaaa gagaaatggc cctacatgga       540
     ctggatattc ttgggctcag tgagactcac tggagaggaa gtgggcattt cgtaactcaa       600
     gaaaggaaca ctgtgtactt ttcagggagt agtgatcaaa gtaagaacgg tgttgcagta       660
     gttgttccta gaaatctgtc caactgtgtt gtmggttacg aacccattaa tgacaggatc       720
     atctctatca aactagatgc ttcaccgtgc aaactcaacg taattcagat ctatgctcct       780
     acagctgcag cgtcagatga ggagatggag aagttctata accaactgga gcaagtcmtt       840
     aataaaatcc ctaccaaaga acagacaata atccaaggtg acttcaatgc taaagttgga       900
     gacactaccc aagactcgca cttacgatcc gtcgttggac tttatggtct tggtgaaaga       960
     aatgaacgag gcaggagctt actggatttc tgcgtgagta acgatatgtc catctgtaac      1020
     acaatgttcc aacatcaccc aagacgactg tacacttgga tatcacctgg tgatagatat      1080
     agaaaccaaa ttgacttcat cctagtgcga aggcgttgga agacttcagt cttagattgt      1140
     aaaaccttcc ctggagctga ctgtggcagt gatcacattc tgctatccat gaaaatgcgc      1200
     attaagctta aatctactaa gaagactgac gaaagacagc taagactcac aagcaaggaa      1260
     tctattcgca aatttggtga acttgtaaga gaaaaacttc accaaaatca gttttgataa      1320
     cgaagcacca gcatcacaaa tatgggaccg aatgaagaac gttgtttctt cgtcactacc      1380
     gacatcagaa caatcgcaga atgcaaaaca tccctggata tcaagtccac actacaatta      1440
     attgaagaga gaagccatct aaagaaaact ggtatccaca ctacccagga tcaagacaga      1500
     tacaagaacc tgtgcagagt aatacaacgg aattgtagaa aggacaaagc agatttcatt      1560
     aatggtatct gtaatgaaat agaacagcat cataatcgca atcaggtacg tgatctcttc      1620
     aagaaaatca aaagcatcac cggtgaattt aatcctcgta cgtgggtgat agatgacgag      1680
     aagggtaacc ctatcggtga caaggaagac gttgttgcga ggtggaaaca gtactgtgaa      1740
     aagctatact ctggaattaa cgacagtacg gacaaccaaa cagttgagca acttaatttg      1800
     gaacctacaa ttctacgcag tgaaatagag aatgcgattc aacatctgaa gaattataaa      1860
     gcccctggtg tagacggcat atcgggagaa atgatcaaag aaatgggaca ggaaggtatt      1920
     gatgcgctgc actcattgtg taaaagaata tgggaaactg gggagtggcc ggatgactgg      1980
     tcaaagtctc tcttcattcc cttacacaag aaagggtcta tcaggaactg ctccaactac      2040
     cgaactattg cactcatatc tcacgcaagt aaaattttac tctacatact gaaccaacgt      2100
     ttgaagccgt acattcaacc ccacatatcc tcagaacaag caggttttgt tgaagggaaa      2160
     ggaactcgtg aacagatwct caacgtaaga caaataatag aaaaatcacg agagttctgt      2220
     gttcctgttt tcatctgctt ccttgactat aggaaagcct ttgactgtgt tgtgtgggaa      2280
     aagttgtggc aggtgcttgc agagatcggt gtccctcccc acttgacagc attgatcaaa      2340
     aatctgtaca atgatcactc cgcagttgta aagacaagtg ctggcacgtc tgattccttc      2400
     agagtttcaa aaggtgtgag acagggttgt gttctatccc cacaactgta caacatctat      2460
     gcagaacatg tcattaggaa agctcttgat ggttggacca aaggcatctc aattggcgga      2520
     agaactgtca acaacctccg ttttgctgat gacactgtac ttttagccaa cagcgaagat      2580
     gaacttgctg agctactaac tagaataaaa gacattagtc tagcatatgg actagacatc      2640
     aacctcagta agtccaaact catgttaatt gatcgagaac aacagatcca gctcacaggt      2700
     caattaaagg aactggaagt cgtgcagtcc ttcacctatc ttgggtcaac catctgcagc      2760
     acaggtagtt gtgaagagga gataagaaga cggatcacgc taggacgagt ggctatgaag      2820
     aagctcacga agatctggca gagcagagca ataacaaata gcacaaagat ccggctagtt      2880
     gaaacactcg tgttttctgt cttcttttat ggttgtgaac atggacactc aaggccagag      2940
     acaaacagcg cattgatgcg tttgagcttt ggtgctggcg taggatgcta cgcataaaat      3000
     ggaccgaaag aagaacaaat gtgtccatta ttgaacaact aatatctcca gacgcctttc      3060
     ttctcgagtc gacgaaaaaa ttctccagtt ctttggccat attgtgagaa gagacggaga      3120
     aaacctagaa aaaataatct tacaaggaaa gatcgagggc acaagaccaa gaggaagagc      3180
     agcgagcaga tggatagacc aaatcaagaa gatctccggt ctacctcttc agcaggcact      3240
     gagagaagct gacaaccgtc cgggatggag acgcttggtt catggggtca cgacgctcag      3300
     caatgagcac aacgacttat gatgatgat                                        3329
//
ID   RTE-6_PPo   repbase;    DNA;    INV; 989 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-989
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3157-3157 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..960
FT                 /product="RTE-6_PPo_1p"
FT                 /translation="KSEHSRQVRSRRNRQVQCGCGPAPGIGXSPYLFLLVI
FT                 DALTVEIQEEAPWCMLFADDIVLVGEDALEVQSRLERWRDKLETAGLKISR
FT                 AKTEQLFCDFGGLSSFIPIALDGAHLPVCSDFRYLGSLIQSDGYIDRDVTN
FT                 RIKAGWMKWRQVTGVICDPQIPLKLKGKIYKAVVRPVMMYGSECWAVKGTD
FT                 ERRLHVTEMRMLRWMCGVTRMDKIRNEYIRGSLRVAPIVEKVRSKRLAWYG
FT                 HVMRRDESHVTRRTLVMSVEGYIGRGRPRKRWMDCVKGDMIKKGVMTEMTY
FT                 DRVMWRTKTCCADPTGVG"
XX
SQ   Sequence 989 BP; 293 A; 166 C; 300 G; 228 T; 2 other;
     gtacgtgcga ctcgtgaktg ctatgtatga aagagcgaac actcacgtca ggtccgaagc        60
     cggcgtaacc gacaagttca gtgtggctgt gggcctgcac cagggatcgg cktaagccct       120
     tatctgttcc tcctggttat cgacgcgtta accgtggaga tccaggagga agcaccctgg       180
     tgtatgctgt tcgccgatga cattgttctt gttggggaag atgcgcttga ggtccagagc       240
     agactggaga gatggcggga taaactggag acagccggac taaagataag tagagcaaaa       300
     acggagcagt tattctgtga cttcgggggc ttatccagtt ttatcccgat tgccttagat       360
     ggcgctcatc tcccagtttg ctccgacttc cggtacctcg gctcattaat ccaaagcgac       420
     ggctacattg accgtgacgt gacaaataga ataaaagcgg gatggatgaa atggcgacag       480
     gtcacaggag taatatgcga ccctcaaatt ccacttaaat taaaggggaa aatttacaag       540
     gccgtcgtaa gacctgtcat gatgtatgga tctgaatgtt gggcagtaaa agggacggat       600
     gaaagaagac tacatgtgac agaaatgcga atgttaagat ggatgtgtgg ggtaacacga       660
     atggataaga tacgaaatga gtatattaga ggaagtttga gagtagcccc catagtagag       720
     aaggttagga gtaaaaggtt agcatggtat gggcatgtta tgaggaggga tgaatcgcat       780
     gttacaagga gaacgttagt tatgagtgtg gaagggtaca tcggtagagg tagacctaga       840
     aagagatgga tggattgtgt aaaaggtgac atgatcaaaa agggagtgat gactgagatg       900
     acgtatgata gagttatgtg gaggacaaaa acctgttgcg ccgaccctac gggagtagga       960
     taaggagatg atgatgatga tgatgtatg                                         989
//
ID   RTE-6_PXu   repbase;    DNA;    INV; 250 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-6_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-250
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3086-3086 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Fragment.
XX
SQ   Sequence 250 BP; 76 A; 50 C; 79 G; 45 T; 0 other;
     tcggtgtgcg cgacatcgcc gacaagatgc aggagagtag gctgcgatgg tatggtcatg        60
     taaggaggag gccgccagac tacgtcggta atttagcact acaactttcc ctccctggtc       120
     gcagatccag aggcagaccc aaaacgagat ggaaagatgt agtaataaaa gacatgagtg       180
     agtgccaagt ttcagaagga gatgtcatgg acagagcgaa gtggaagaga cggattggga       240
     aagctgaccc                                                              250
//
ID   RTE-70_LMi  repbase;    DNA;    INV; 3434 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   RTE-70_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3434
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 309-309 (2015).
XX
DR   [1] (Consensus)
XX
CC   >86% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(268..1074,1035..1160,1159..1467,1446..1676,
FT                 1630..1824,1784..3019,2878..3402)
FT                 /product="RTE-70_LMi_1p"
FT                 /translation="GNPPFWGSNEKGTTALWWRRTPKAKGEKPRQKILSCV
FT                 RPSKPVGKYSYIAFKTQTSLGTNHTGFDPTSSSTGVNDGRPDDMHQYKKMK
FT                 PNRLNNKLNIGTLNILTLNGKVEEMTDVLTERKLDILGLSETKWKGKGEKN
FT                 LRGGGKLYWSGNNRFGRNGVAVMVNKNVQSCIESVRYISDRIIILNLRFQK
FT                 EKLKVIQIYAPQVGCSEQEKIDFENELEKHMESANIVMGDFNAQVGKDRKG
FT                 FEQVLGCFGYGGRNEEGKDSWICARGMERRERLLDLCQRNGMKIANSWFMK
FT                 RESHVITRYSWDGRTKSVNIDYILVDREWGETLTNVKVIPSVSADGDHRLL
FT                 VGQWKMKQYVKNRKQKKVMRIRDWKLKESESAEKYRELIIQKFPKEVVCDV
FT                 EKEWSLFKDTLVEAAQKSMWSSTKKYVVEHLERKVRQTSWWDDTTIQAVRR
FT                 KNGAWRKWWKTKNEEDHKRYIEEKKKCKEIVEAAKKKAWEELTKKTWKQQR
FT                 KRHGKSLQKKLEEDVKSNKKMFYKMMKNKRKTTEVPVKMEAEDGTVIEDLG
FT                 GKRSLERTFLKIWGEKDLWREHFKKLLNAEEHVHEETTNNGETEISWETEL
FT                 GQITWEEMEIAVKKMNGGKAPGPDEVSVDMIRAAGPVGMKWLYRVLSSVWR
FT                 NSTIPDDWRRGDIVPIFKKGNKKLCKNYRGITLMSHTAKIFERILLNRINE
FT                 KIEKELSEEQHGFRKGRSTIDLIFSIRQLMEKSWEYNKRVIMVFIDIEKAY
FT                 DSVNRERLWEEMKKIGIEDGYINVIKTMYRGHNCRIRTPLGNSECFEIRQG
FT                 LKQGSILSPALFNVVMEGMNRAVKDIVKEKDKKMIFADDMVIWGDKEVDVQ
FT                 LQLDAWKEIMERYGLKINKDKSEVMVFGRDKGINRNITLNGEPLKVVDSFT
FT                 YLGSEISSDGRITNEINRRLQKGGNFYQTIKHLIWIRKFQKKQNSLCIRVT
FT                 TSLLSPMEEKHGQQEVTEGRQFLSNNKTPDLDKEVPEKAKLLMYKSYYFPI
FT                 VTYGGETWTMTERDWSRLQAGEMKFLRAVKGKTRMDRVRNVDIRKDLKQVS
FT                 LREEIEKKRLRWYGHVKRMCGQRLPKIMEELKLDGKRPRGRPRTRWKMGVR
FT                 TSVERRGVTWQQVEEEKWWEDRAKWRGLVSTQTRQ"
XX
SQ   Sequence 3434 BP; 1328 A; 457 C; 933 G; 716 T; 0 other;
     ggcaccatac acaatcatta gcctggctcc agggaggtag ggtccccttc cctattcctc        60
     cactggggta attcctgtct ggcgcatccc gtcgcagggg tgggcatcct acacttcagt       120
     aggccggagt gatgggatgg ctgagttcag gcagggaccc aatccgtggg gtataacacg       180
     gaacctgtgc ccagggttac gggtgaagac cttaatggca gcgatggcgg agaagaaaga       240
     cttcggaacg gcggagctgg cagatgaggc aaccctcctt tctggggatc aaatgagaag       300
     ggaaccactg ccttgtggtg gaggagaact ccaaaggcta agggagaaaa accccgacag       360
     aaaatccttt cttgcgttag gcctagcaag ccagttggga agtattcata tattgctttc       420
     aaaacacaga cgagcctcgg aacgaaccac accggatttg accccacctc ttcaagtact       480
     ggtgtgaatg atgggagacc tgatgatatg catcagtaca agaagatgaa accaaatcga       540
     ctaaacaata agctaaatat tggcaccctt aatatattaa ccctgaatgg aaaagtggaa       600
     gaaatgacag atgtactaac agagagaaag ttagatattt tgggactaag tgaaacgaag       660
     tggaagggaa aaggtgagaa gaatttgagg ggaggaggaa aactgtactg gagtgggaac       720
     aacaggtttg gaagaaatgg tgtggcagtg atggtgaata agaatgtaca aagctgtatt       780
     gaaagtgtga gatatatatc agacaggatc ataatcttaa accttagatt ccaaaaagaa       840
     aaactaaaag ttatccagat ttatgcacct caagtgggat gtagcgaaca agagaagata       900
     gactttgaaa atgagttgga gaaacatatg gagagtgcta atatagtgat gggagatttt       960
     aatgcacagg taggcaaaga cagaaaggga tttgaacaag tattgggatg ttttggatat      1020
     ggaggtagaa atgaagaagg gaaagactcc tggatttgtg ccagaggaat ggaatgaaaa      1080
     tagcaaacag ctggtttatg aagagagaaa gtcatgttat caccagatac agctgggatg      1140
     gaagaaccaa gagtgtaaat tgattatatt cttgtagata gggaatgggg agagacacta      1200
     acaaatgtga aggtaattcc aagtgtgagt gcagatggag accatagatt actggtgggg      1260
     caatggaaaa tgaaacagta tgtgaaaaat aggaaacaga agaaagtgat gaggatacga      1320
     gattggaaac tgaaggagag tgaaagtgct gagaagtata gagaattaat catacaaaaa      1380
     tttccaaaag aagttgtctg cgatgtagaa aaagaatgga gtttattcaa agacacctta      1440
     gttgaagcag cacaaaaaag tatgtggtag aacatctgga aaggaaagta agacagacaa      1500
     gttggtggga tgataccaca atccaggcag ttagaagaaa aaatggagca tggagaaagt      1560
     ggtggaaaac taaaaatgag gaggaccata aaagatatat agaggaaaag aagaagtgca      1620
     aagaaatagt ggaagcagca aagaaaaagg catgggaaga gcttacaaaa aaaacttgaa      1680
     gaagatgtaa agagcaataa gaaaatgttc tataaaatga tgaagaataa aagaaagact      1740
     actgaagtac cagtaaaaat ggaagcagag gatggtactg tgattgaaga tctgggggga      1800
     aaaagatctc tggagagaac attttaagaa actgttaaat gctgaggagc atgtacacga      1860
     ggaaacaaca aataatggag aaaccgagat aagttgggaa acagaattag gacaaattac      1920
     atgggaagaa atggaaatag ctgtgaaaaa gatgaatggg gggaaagctc caggacctga      1980
     tgaagtatca gtggacatga taagagcagc aggaccagtg ggaatgaaat ggctatatag      2040
     agtactgtca agtgtgtgga gaaatagtac aatacctgac gattggagaa gaggagacat      2100
     tgttcccatc ttcaaaaaag gcaataaaaa actttgtaaa aactacagag gaataaccct      2160
     tatgagtcat acagccaaga tttttgaaag aattttacta aatagaataa atgaaaagat      2220
     agaaaaggag ctgagtgagg aacaacatgg gtttaggaaa ggaagaagca cgatcgacct      2280
     gatattttct atccgtcagc tgatggaaaa aagttgggag tataacaaaa gggtgataat      2340
     ggtttttata gacatagaaa aggcatatga ctcagttaac agggaaagac tctgggaaga      2400
     aatgaagaag ataggtatag aagatgggta cattaatgta ataaagacaa tgtacagagg      2460
     acacaactgt agaatcagaa caccactggg gaactctgaa tgcttcgaaa taagacaagg      2520
     acttaaacaa ggaagtattt tatctcctgc actttttaat gttgtgatgg agggaatgaa      2580
     tagggcagtt aaagatatag taaaagaaaa agacaaaaag atgatttttg cagatgatat      2640
     ggtaatatgg ggtgataaag aggtagatgt acagttacaa cttgatgcgt ggaaggaaat      2700
     aatggaaagg tatggattaa aaataaataa agataagagt gaagtaatgg tatttggaag      2760
     agacaaaggg atcaacagga atattacttt gaatggagaa cccctcaaag tggtagatag      2820
     tttcacttat ttagggagtg aaatatctag cgatggaaga ataaccaacg aaattaacag      2880
     gaggttacag aagggaggca atttctatca aacaataaaa cacctgattt ggataaggaa      2940
     gttccagaaa aagcaaaact ccttatgtat aagagttact acttccctat tgtcacctat      3000
     ggaggagaaa catggacaat gacagaaagg gactggagca gactgcaagc aggggaaatg      3060
     aaatttctca gagcagttaa gggaaaaaca agaatggaca gagtaaggaa tgtagatatt      3120
     agaaaggacc ttaaacaagt aagtttgaga gaagaaatcg aaaaaaagag attaagatgg      3180
     tacgggcatg ttaagaggat gtgtgggcag agacttccca aaattatgga agaactaaag      3240
     ctggatggaa aaagacctag agggcgccca cgtacacggt ggaaaatggg agtgagaaca      3300
     tctgtagaaa gaagaggtgt gacctggcag caagtggagg aagaaaagtg gtgggaggac      3360
     cgagccaaat ggagaggact cgttagcacc cagacccggc agtagctgga gcgggatccg      3420
     gatacataca taca                                                        3434
//
ID   RTE-71_LMi  repbase;    DNA;    INV; 3245 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-71_LMi;
KW   nonautonomous.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3245
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 310-310 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(65..655,693..911,982..1377,1522..1737,
FT                 1706..2446,2403..3239)
FT                 /product="RTE-71_LMi_1p"
FT                 /translation="LPKESLMPGRPKGRIQEPNEVCPTSTYRLPVTYHIVN
FT                 LSFFLTIINHYQGYGEVLNDSFGGEEHLWKSAAGGRGSLFLLRANEEQNHC
FT                 LVVKRDLHHWKKSRQKISLLSPGFRWQPHQDTRNQWANHSLFLNKLITETE
FT                 TKVQNWTVNPDDELLHEDDNENWLLEFEDFEGETCDMENEELWAGNFGIER
FT                 GEMARIWSDDKDEAHRDGVGLLLSRNATRSLMEWKPTSSMLPTAMVKTKIR
FT                 NVTIIQWYAPTQQSEIEKKEFYRCCEMSLSGAFHGIHGLGDMNENGQTFTE
FT                 YCSSQELVIGSTVFPHRRRHKVTWVSPDQVTENQIDHITVIGGSKKFEDVR
FT                 NREEQTIEVIVILCHLDQKFNTGTELKSSKLEQFHIELRNRCQVLDSRQRM
FT                 MWRLYGAKAGREAEEQQKGGYKGALWHHKDASKKGFNKTRPVKSKTGEILT
FT                 TCEQQLIDGGNTLRRFLIEKWNGKRTAKRRSGMEREQQKDEEQEEEENDPG
FT                 ISLDSPSQCEIWTALKMKNGKAPGLHPLLEKIWKEEEIPTDWKKGLIVKLP
FT                 KKGDTTNCNNWRGITLLSIPSKVLSRVILNRIKDSVERRLRKEQAGFRQHR
FT                 SCVDLIITLRIILEQSVEWRNTLYLAFVDFEKAFDSVNQRIMWKTLEEYRI
FT                 PSKIIKIMKQMYEGYECQVLHEGKLTEKINVKSGVRQGCVLSPTLFLLVLD
FT                 SVMRRVMGGRKRVFNGDEREAWEDGRGFSMGTRERLEDLDFADDICLMAQR
FT                 YRDIKDKLNRLQKEAERAGLIINTNKTKEMRINPDVVTSLTVNGKEIERVE
FT                 SFLYLGSIVTTDGGAEEDVQSRIRKANGAFVQLYPVWKNRNISRKTKLRLF
FT                 NSNVKSILLYGCETWKVTKQINNRLQVFINRCLRRITNVRWPDIISNEDLW
FT                 TMTNQQPIDIQIKERKWRWIGHTLRKPDGAVERVALDWNPQGTRKRGRPKT
FT                 TWRRTIEKEISEVDKTWSEVKRMARNRTVWRNFVKALCSRGSNRK"
XX
SQ   Sequence 3245 BP; 1054 A; 611 C; 895 G; 685 T; 0 other;
     tgttcgagcg ggcgaggagg tttgtgcgct ctcgatccgg tgggctatgt cggcggtagc        60
     gtagctacca aaagagtcac tcatgccggg cagaccaaag gggaggatcc aggaaccaaa       120
     cgaagtgtgt cccacatcga cctatcgttt gcctgtcacc tatcatatcg taaacctctc       180
     atttttcctt actattatta accattacca gggttatggt gaagtcctca acgacagctt       240
     cggtggagag gaacaccttt ggaaaagcgc agctggcgga agaggctccc tcttcctcct       300
     gagggcaaat gaggagcaga accactgcct tgtggtgaag agggatcttc accattggaa       360
     gaaatcccga cagaaaatca gcctgctgtc cccaggcttt agatggcagc cccatcagga       420
     cactcgaaat cagtgggcta atcactcact cttcttaaac aagctgatta cagaaaccga       480
     aacgaaagta caaaactgga cggttaaccc tgacgacgag cttttgcacg aagacgacaa       540
     cgaaaattgg ctgctggaat ttgaggactt tgagggagaa acatgcgaca tggaaaatga       600
     agaactatgg gctggaaatt tcgggattga gcgaggtgag atggccagga tttggtgaga       660
     tacagaaaac agatggaatt atgtttctgt aatctgatga taaggatgaa gcgcacaggg       720
     atggagtggg tttgctgctc agtagaaacg caacgagaag tcttatggag tggaagccga       780
     cttctagtat gctaccgact gctatggtaa agaccaagat cagaaatgtg accattatcc       840
     aatggtatgc acctacacaa caatcggaga tagagaaaaa ggaattctac cgatgttgtg       900
     agatgtcact ttgaggaaaa ctaagaaggc tatggtcatt gttatggaag acttcgatgc       960
     gacggttggc tcagaaaatg atctggagca tttcacggta tacatggtct tggcgatatg      1020
     aatgaaaatg ggcaaacgtt tacggaatat tgctccagcc aagagttagt gataggtagc      1080
     acagtgtttc ctcatagacg gcgtcataag gtcacttggg tgtctcctga tcaagtaaca      1140
     gaaaaccaaa ttgatcacat tacagtgata ggaggttcaa agaaatttga agatgttagg      1200
     aacagagagg agcaaacaat agaagtgatc gtaatcttgt gtcaccttga ccaaaaattc      1260
     aacactggta ccgagctaaa gagcagcaaa ctggaacaat ttcatattga acttagaaac      1320
     agatgccagg tgttggactc gagacagaga atgatgtgga ggctgtatgg ggcgaagtga      1380
     agaacatctt gtggaaacaa gtgagagcgg gaaggagata gaggccaagt taacatctgc      1440
     aaaataggcg caaagctcaa acacagtaga gcattcagta cagataggaa agtaagtgtg      1500
     gatctaggat gtggattgtg agcaggtaga gaagcagaag agcagcaaaa agggggatat      1560
     aaaggagctt tatggcatca caaagatgct tcgaagaaag gctttaataa aactaggcct      1620
     gtgaagagca agacaggcga gatccttact acgtgcgaac aacagctaat agatggaggg      1680
     aacactttgc ggaggttttt aatagagaag tggaatggaa agagaacagc aaaaagatga      1740
     agagcaagaa gaagaagaaa atgaccctgg catcagcctt gactctccat cccagtgcga      1800
     gatatggaca gcactgaaga tgaaaaacgg gaaggcacca ggtctgcacc cgctgctgga      1860
     gaaaatatgg aaagaggagg aaataccgac cgactggaag aaggggctga tagtcaagtt      1920
     gccgaaaaaa ggggatacaa caaactgcaa caactggagg ggtatcacct tgctctccat      1980
     tccaagcaaa gtactgtcgc gagtcattct gaatcgtata aaggactcag tagaaagaag      2040
     gcttcgaaag gaacaggcgg gatttcggca acatcgcagt tgtgtggatc tcatcattac      2100
     actccgaatt atcctagagc agagtgtgga atggcggaat accctctacc tcgcatttgt      2160
     ggactttgag aaagcctttg attctgtaaa tcaaagaatc atgtggaaga ccctagagga      2220
     atacagaatt ccttcaaaaa tcatcaagat catgaaacag atgtacgagg ggtatgagtg      2280
     tcaggttctt catgaaggga aactaacaga aaagataaac gtcaaatctg gagtgagaca      2340
     ggggtgtgtt ctttccccca ctctgttcct gttagtcctg gatagcgtga tgaggagggt      2400
     aatgggagga cggaagaggg ttttcaatgg ggacgagaga gaggcttgaa gatcttgatt      2460
     ttgcagacga tatttgcctt atggcacagc ggtaccggga tataaaagac aaactgaaca      2520
     ggttgcagaa ggaagcggaa cgcgcaggtc tcataatcaa cacaaacaag accaaagaga      2580
     tgaggataaa tcctgatgtc gtgaccagcc tgacagtaaa tgggaaggaa attgagagag      2640
     ttgagtcctt cctctacctt ggaagtatag ttacaacgga tgggggagca gaggaagacg      2700
     ttcaaagccg tatccggaag gcaaacggtg cgtttgtcca gctttacccc gtgtggaaaa      2760
     atagaaacat ctccaggaag actaagctcc gcctcttcaa cagcaatgtt aagtcgattc      2820
     ttttatacgg ctgtgagacg tggaaagtta caaaacagat aaacaatcgg ctgcaggtgt      2880
     tcataaatag atgtctgcgt cgaataacaa atgtgaggtg gccggacata atctcaaatg      2940
     aagacctttg gaccatgacc aatcagcagc cgattgatat ccagatcaag gagaggaagt      3000
     ggcgctggat cgggcacacc ctaaggaagc cggatggagc tgtcgagagg gtggcgctag      3060
     actggaaccc tcaaggcacc agaaagcgag gtcgaccaaa gacgacctgg aggaggacga      3120
     tcgaaaagga aatctccgag gttgataaga cctggagtga agttaagagg atggccagga      3180
     accgtactgt gtggaggaat ttcgtcaagg ccctatgctc cagagggagc aacaggaaat      3240
     aagaa                                                                  3245
//
ID   RTE-7_DPl   repbase;    DNA;    INV; 1333 BP.
XX
AC   .
XX
DT   07-FEB-2013 (Rel. 23.01, Created)
DT   07-FEB-2013 (Rel. 23.01, Last updated, Version 1)
XX
DE   RTE-type non-LTR retrotrotransposon from the monarch butterfly
DE   genome: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_DPl.
XX
OS   Danaus plexippus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina;
OC   Danaus; Danaus.
XX
RN   [1]
RP   1-1333
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the monarch butterfly genome.";
RL   Repbase Reports 18(1), 131-131 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(28..972,852..1202)
FT                 /product="RTE-7_DPl_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="SQILKYRSYTTSKKDFSTMDHIHTLEQVIEKYTEFNR
FT                 NLYISFIDYTKAFDSLYHDSVWQALHNCKIDPIIIRTIKNIYQNSVSRVKL
FT                 ESRGDEIKIARGVRQGDPLSPKLFIAVLQCIFSKLNWTSEGIPINNERLTH
FT                 LRFADDIVIFAETPKKLENMISQLNIESKYVGLHMNLSKTKIMTNGKRDKV
FT                 MLDGVELEYVEQYVYLGKQVSFAKTKNEDEVNRRITCSWIKYWAHKEILKG
FT                 KYDLNMKKTIMDTCVLPCLTYGSPTWTFTNKICNKIRTCQRAMERSMLHLR
FT                 KIQKSRSQEIRNKAKLTDAYTKYQNKNLSASNGEEHASPEKNSKIKKPRNK
FT                 KQGQIDRCIHQVLKLKWSWAGHVARCTDQRWTLKSAKWSGPHGIRNVGRPQ
FT                 KRWKDDIEETVGKDWTKIAQDRKKLKELRRPIPYEGFL"
XX
SQ   Sequence 1333 BP; 526 A; 245 C; 259 G; 303 T; 0 other;
     tataactgtt tctgtgtaaa atcctgatcc caaatattaa aatataggtc ctatacaaca        60
     tcaaaaaaag atttttcgac catggatcac atccatacac ttgaacaagt aatagagaaa       120
     tacacagaat ttaacagaaa tctatatata agcttcatcg attacacaaa agccttcgac       180
     agcctctatc acgactctgt atggcaagcc ctacataact gcaaaataga cccaataata       240
     ataagaacca taaagaatat ataccagaac agtgttagca gagtcaagct agagtctaga       300
     ggagacgaaa tcaaaatcgc ccgaggcgtc aggcagggag accctttgtc tccaaaattg       360
     ttcatagccg tcttgcaatg catattctcc aaattgaact ggacttctga aggtatcccc       420
     ataaacaacg aacgcctcac acatctgaga tttgctgacg acatcgtgat ctttgccgaa       480
     actcctaaga agttagaaaa tatgatatcg caactaaata tagagagcaa atatgttggc       540
     ctgcatatga acctaagcaa gacaaaaata atgacaaacg gtaagagaga taaagtaatg       600
     cttgatggtg tcgaacttga atatgtggaa cagtacgtat acctaggcaa acaagtatcg       660
     tttgctaaaa caaaaaatga agatgaggtc aacagaagaa taacgtgcag ttggattaaa       720
     tactgggccc acaaggaaat tctaaaaggt aaatacgacc taaatatgaa aaagaccatc       780
     atggatactt gtgtcctgcc ctgcttgacc tatggctcgc caacgtggac gttcactaac       840
     aaaatatgta acaaaataag aacttgtcag cgagcaatgg agaggagcat gcttcacctg       900
     agaaaaattc aaaaatcaag aagccaagaa ataagaaaca aggccaaatt gacagatgca       960
     tacaccaagt actaaaattg aaatggagct gggctggcca tgtagcgaga tgcacagacc      1020
     agcgatggac tcttaagagc gcaaaatggt ccggtccaca tggaataagg aacgtgggca      1080
     gaccacaaaa acgatggaag gacgacatag aagagacggt cgggaaagac tggacaaaaa      1140
     tagcacaaga tagaaaaaaa ttgaaagaat tgaggaggcc tataccctac gaggggttcc      1200
     tatagtatag attttaagga aaaactaaca ttagaattaa ctatcttcta aacttcacta      1260
     acatagattt aagtaataaa aaaaagcatt gtaatgttat aggaaataaa aggctttatt      1320
     attattatta tta                                                         1333
//
ID   RTE-7_Hmel  repbase;    DNA;    INV; 4054 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-4054
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1351..4002
FT                 /product="RTE-7_Hmel_1p"
FT                 /translation="KHYSRTVWNWFYNKKHLKNNIQDIIGISDRIAILNIK
FT                 LPEHKQPISIVQVYAPTEHAEEEQKDLFYQKLKQAMEQVYKTVIIMGDLNA
FT                 QIGKRNKNEDYCLGPYSFGKRNNNGQRLIEFVQEFNLRVMNXYFNKKSRKW
FT                 TWISPNGRVKNEIDFIXTNKPKLFIDVGXINQLEFNTDHRMLRGTLSTTNV
FT                 KQSRKXLASTRGIVELPLPDTVLSSLELTLQDKIQQIHTIQEKYDILENQL
FT                 KSVENDVHVTKSAKDKIGGKARDLILLRHSKRQQKPVDRNEIAKISKQINS
FT                 CIRYHRQETXLNRIMFHLETTGGVRKAQKEMQDCRNWIXDMKKPNQQKSNT
FT                 KRIEILGIATDFYRELYNDEYPMQIDPNCIITEEEIPFITKTEITKAIQSQ
FT                 KNRRSPGEDGISNELLKGVSDSIINTMYNIFNDIMEQETIPSQWTTSTIIL
FT                 LHKKGRRDDINNYRPISLMSNLYKIFSKVLLERITRILDENQPKEQAGFRA
FT                 GFSTLDHIFTIKQITEKYKEYRLSYYLAFIDYHKAFDSLKHEKIWEALSCQ
FT                 GVHKKYIRLIMEIYKNMTAKIKTENLGQTFPVKRGVRQGDPLSPKLFSATL
FT                 ELVFQKLDWSNYGIRINGEKLNHLRFADDLVIISDNPDQLQTMLNQLVSES
FT                 RKVGLQMNMAKTKLMTNHIQTPINVDNDSIEYVDQYTYLGQIISPIHNTSK
FT                 EIENRVNVAWKRYWALKDITKSKSIPMNLKTKIFNSCILPTMTYGCQTWAL
FT                 KLQNVQKLQVCQRNMERSMLNIKRKDKVKINVIRQKTKTVEVSYKIKKLKL
FT                 KWAGHLIRNKTNKWAKQVAEWYPREGKRKRGRPSKRWDEDLKLAAGTLWMR
FT                 KTHDRKMWKALGEAYAKAKQSFTGVNINSVL"
XX
SQ   Sequence 4054 BP; 1725 A; 656 C; 690 G; 961 T; 22 other;
     tttccggttc cggtkrycgt acgattacgt cctcaatcag tgctcttgtt taaaagtgat        60
     taaaagtata gttcaactag taagatatyg agaaatttgc gaaagacatt ataaattacg       120
     ataaagcrgg tgtaatcaca gttaaaacyt agtgtttaga gctaaaactc aacataaagt       180
     gtttaaagac taaagttata acctcaaatt aataattgac agcgtcaaga ttaccaacat       240
     aagttccggt tgacgaatct aaaacaatat gtcrgaagaa atgtcaatgt caacattata       300
     tagcatgatg aagcaagaaa tggagaaaca agctartctt attactgcta atacggataa       360
     aattatgtta tctattgayg agagaattaa accattaata gaagaaaatc agaatcttaa       420
     gatagaaatt gaagtactca ayaaaaaagt gactacrttg gaagatatga acaaaaagaa       480
     taacattata atacatggga tgagggaatc cgaaacgaat tatttacaat tatacaataa       540
     tattaagcag ttttttcaaa aagtagatgt waatatagaa aaatacgata ttaataaaat       600
     gcatagaatt ggaaaaaata aaatagacaa agtgagacca gtgctgatct cttttactag       660
     ttacaacaag aaagctgaag taatgagaaa caagaaaaaa gttactgagg amatttatat       720
     aacagaagat ttttccaaag aaaccataca gaagcgcaaa gaattactac cacagctaaa       780
     ggaagaaagg aagaagggaa acgaggccta catatggaat aacaaactaa tagtaaaatc       840
     tagggaaaat gagaaaagga aaagagacaa ctcaacatct cccggtggga acctacaaca       900
     acaagaaaaa gtaaaaacta taatagctcc tgctaaactt ctacgaacag atccatttgc       960
     atacatgcgt tcccgatcac actccctaac tgaaaaaaca actcctaata tgtaggaatc      1020
     actagacacc ggtaatcaag aaaaaataaa caacaaaaac ctccaattaa aagaaaatct      1080
     ccccaagccg gttggtcacm gtggggttag agaccattac ccctcaaaag accctacact      1140
     gggaatcaaa actaaaaaaa gtaactgtaa aaataacaat aacaatattt tcattgcaac      1200
     attgaacaca aggtcattaa aaacacaaga aagattatac gagctagatt ttgcattaca      1260
     acggataaag tgggatatta taggtttatc tgaaatacga agatcagaag aacaaataca      1320
     ggaatatgat aactatatat tctactttaa aaacattact ccaggactgt atggaattgg      1380
     ttttataata aaaaacatct taaaaataat atccaggata ttattggtat ttcagataga      1440
     atagcaattt taaatattaa gttacccgaa cataagcaac ctatttcaat agttcaggta      1500
     tacgctccaa cagaacatgc tgaagaagaa caaaaagacc tattctacca aaaattaaag      1560
     caagcaatgg aacaagtata caaaacagta ataataatgg gagacctaaa cgcccaaata      1620
     ggtaaaagga ataaaaatga agactactgt ctgggacctt attcatttgg aaagcgaaat      1680
     aacaacggtc aaaggctaat agaatttgtc caggaattca acttaagggt matgaatast      1740
     tatttcaata aaaagagcag gaaatggacg tggatatcac caaatggaag agtcaagaac      1800
     gaaattgact tcatawwcac aaacaaacca aagctattta ttgatgtagg trctataaac      1860
     caactagaat ttaacacaga tcaccgtatg cttcgtggaa cactatcaac taccaatgta      1920
     aagcaatcta gaaaaytttt ggcgagcact agaggaatag tggaactacc actaccagac      1980
     acagtcttgt cttctctgga acttacacta caagataaaa ttcaacaaat tcatacaata      2040
     caagaaaaat atgatatctt ggaaaaccaa ctaaaatcag ttgaaaatga tgtccatgta      2100
     acaaaatcag caaaagataa aataggaggg aaagcaagag atctaatatt actgagacat      2160
     agtaaaaggc aacaaaaacc agtagatagg aatgaaatag caaaaataag caaacaaata      2220
     aattcatgca taaggtacca cagacaagaa accavgctca atcgaataat gttccactta      2280
     gaaactactg ggggagtcag aaaagcacag aaagagatgc aagattgtag aaactggata      2340
     ahagacatga aaaaaccgaa tcaacaaaag agcaatacaa aacgcataga aatattaggc      2400
     atagctacag atttttatcg agaactttac aatgatgaat acccaatgca aatagaccct      2460
     aactgtatta tcaccgagga agagatacca ttcattacta aaaccgaaat aactaaagca      2520
     attcaatcac aaaaaaatag gagatcacca ggggaagatg gaatctcaaa cgaacttctg      2580
     aaaggagtct cagacagtat aataaacaca atgtacaaca tattcaatga cataatggaa      2640
     caagaaacaa taccatccca atggactaca tcgacaataa tattactcca taaaaaaggc      2700
     agaagagatg acatcaataa ttacaggccc ataagtctaa tgtcgaacct gtacaagata      2760
     ttttcaaaag ttttattgga aagaatcaca agaatcttag atgagaatca gccaaaagag      2820
     caggcaggat ttcgtgcggg tttttcaact ttagatcaca tttttacaat taaacaaatt      2880
     acagagaaat acaaagaata cagattatcc tactatctgg catttattga ctatcataag      2940
     gcatttgact cacttaaaca cgagaaaatc tgggaagctt tgtcatgcca aggagtacac      3000
     aaaaaatata tccgcctcat aatggaaatt tacaaaaaca tgactgcaaa aataaaaact      3060
     gaaaatctgg gccaaacctt tcctgtcaag cgaggggtaa ggcaggggga tcccttatcc      3120
     ccgaaattgt tctcggctac acttgaactt gttttccaaa aattggattg gtcaaactat      3180
     ggaataagga taaatggaga aaagttaaac catctccgat ttgctgatga ccttgtaata      3240
     atttctgaca atccagatca attacagacc atgctcaatc aactagtgtc agaaagtaga      3300
     aaagtaggcc tacaaatgaa tatggcaaaa actaaactaa tgacaaacca tatacaaaca      3360
     cctataaatg ttgacaatga ctcaattgaa tatgttgacc aatacacata tcttgggcag      3420
     atcatatctc caatacataa cacctcaaaa gaaattgaaa atagagtaaa tgtagcttgg      3480
     aaacgatatt gggctctgaa agatataaca aaaagtaagt caataccaat gaatttaaaa      3540
     accaaaatat tcaactcatg catacttcct actatgactt acggatgtca aacatgggct      3600
     ttaaaattac aaaatgtaca aaaacttcaa gtatgtcagc gcaacatgga aaggagcatg      3660
     cttaatatca agagaaagga caaagttaaa attaatgtta ttcgccagaa aacaaagact      3720
     gtagaagtat cttacaaaat taaaaagctg aaattgaaat gggcagggca tctaatcaga      3780
     aacaaaacca acaaatgggc aaaacaggtg gcagaatggt acccaagaga gggtaagaga      3840
     aaaagaggaa gaccttcgaa aagatgggat gaggacctaa aattagctgc gggtacattg      3900
     tggatgagga aaacccacga caggaagatg tggaaggctt tgggggaggc ctatgctaag      3960
     gcaaaacaat cttttaccgg tgtaaatata aattctgtat tatgattatt tagattgtta      4020
     ataaaggctt tattattatt attattatta ttat                                  4054
//
ID   RTE-7_LMi   repbase;    DNA;    INV; 3265 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3265
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3468-3468 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(436..567,513..1286,1256..3199)
FT                 /product="RTE-7_LMi_1p"
FT                 /translation="MDRNKLDVLGMCEVRWGGCGELESGDSDCTTXVKIKM
FT                 ECMELEYLRLYYSXEDKNGMYGVGILIGKRLKDKVMKVEYINGRIMMIRLK
FT                 GKKEDLVIIQVYMPTSNHSEEEVEECYEKIENLAEREKRNACIVVMGDWNA
FT                 VVGEGSEGKALGKFGLGERNERGQRLLEFCNENLMVVGNTLFDNHKRRRYT
FT                 WISRFDNKRHQIDYIMIQQRYRNCLKSAKSYPGADIYSDHILVVAEVLVKL
FT                 KRTWKGQKREFINIEKLKDKGICEKLENAFSEIIMPGQEMECIERRWDHYK
FT                 NGLKRQLRKRKWVKKAAKETLGVKERKRVKKEWITPEMISKMDDRRKWKTV
FT                 NTEEGKRNYRRLNNELRRETRKARVKWLTEKCDKIENLXKEGKYDLMYKEA
FT                 MDLVFREKNSNSGIKEIEAADGKMVNETQEVMRRWEEYIEWLYDGDTRPSE
FT                 DELGLEEENTVAEDDKGNAILTSEVEASVKEMKNGKAEGIDEIPVELLKSL
FT                 QREGKKELIGLYNQIYMTGNWPKDFCESILIPIEKKKNSKKCEEHRTVSLI
FT                 SHTAKVLLRTLNRRLYGKLNAVMGEEQFGFRRGVGTRDAIGLLRVIGERYM
FT                 EKKRKVYAIFIDLEKAFDRVRWDKLMAILRKHGVDWRDRKLITNLYLNQTA
FT                 RVRIGGVISEEIELGRGVRQGCCLSPTLFNIYLEDIIKESFNGSRGVCIGG
FT                 RRVECIRFADDMVVMAESAKEMEQMLDDLNTKLEEYGMKINKKKTKSMVIG
FT                 GRNTKCRLKIGGEEIEQVHSFKYLGSMIMDDMYCTAEIKKRIAMAKEGFKR
FT                 KQRLLCGPLKKDLRKRLAKCYIWSVVLYGAETWTLRKEDERRLEALEMWIW
FT                 RRMEQVKWEDRIRNEEVLRRVGEERNMLEVIRKRKRNWIGHCLRRDCLLKE
FT                 GIEGMVKGKRGRGKPRYQMLDNIQGNKYEEMKRLALDREKWKRINP"
XX
SQ   Sequence 3265 BP; 1269 A; 410 C; 901 G; 682 T; 3 other;
     cagggacaag catcttgcgt gacgtggtgg cgagcatggg gacccaagct ggcctggcat        60
     tgcttcccct tacctgtgcc aggtccctcc tgttatcttt cctatcgacc accctcggtc       120
     aactcttgtt catttccgac cccgacggta ttaagctatg gagtcttcat tttcctctct       180
     cagtgcaagg taacaggaaa ccaccactga cattattttc tctagacgct catggggtga       240
     cctctttgta aaagatttgg aggtaaagct tcccctcaat cggatctccg ggaggggaat       300
     acaacgaggt ttccagacat aaggagagat ggaacaggaa ggaaggagaa ggaaaaagaa       360
     gaattattga ggataggaac gtggaatgtt ttgacccttt tgcaggaagg gaaattagaa       420
     aacgctaaac atgaaatgga cagaaataaa ttggacgtac ttggaatgtg tgaggtaaga       480
     tggggaggtt gcggagaact mgaaagtggt gactccgatt gtactactca kgtgaagata       540
     aaaatggaat gtatggagtt ggaatactga taggtaaaag actgaaggac aaggttatga       600
     aggttgaata catcaatgga agaataatga tgataagact gaaagggaaa aaggaagatt       660
     tagttatcat ccaagtttat atgccaacaa gtaatcattc agaggaagag gttgaggaat       720
     gttatgagaa gatagaaaat ctggcagaga gggagaaaag gaatgcatgt attgttgtaa       780
     tgggtgactg gaatgcggta gttggtgaag gatcagaagg aaaagccctt ggaaaatttg       840
     gattgggaga aaggaatgag agaggacaaa gattgttgga attttgcaat gaaaatttaa       900
     tggtagttgg aaatacattg tttgataacc acaaaagacg aaggtatact tggatatcaa       960
     gatttgacaa caaaagacat caaattgatt acataatgat acaacaacga tatcgaaatt      1020
     gcctaaagag tgccaaaagt tatccagggg cagacattta ctcagaccat atactagtag      1080
     tagcagaagt tctagttaaa ttgaaaagaa cctggaaagg acagaagaga gagtttatta      1140
     acatcgagaa actgaaagac aaaggcattt gcgaaaaatt agagaatgca tttagcgaaa      1200
     tcataatgcc aggacaggaa atggaatgca tagaaaggag atgggatcat tataaaaatg      1260
     ggttaaaaag gcagctaagg aaacgctagg agtcaaggaa aggaaaaggg taaagaaaga      1320
     atggattaca ccagaaatga taagcaagat ggacgaccgc aggaaatgga aaacagtaaa      1380
     tacagaagaa ggaaagcgta actacaggag gttaaataac gaactaagaa gggaaacacg      1440
     caaagcaagg gtgaaatggc taacggaaaa gtgtgacaag atagaaaacc tgsaaaaaga      1500
     aggaaaatat gatttgatgt acaaagaagc aatggatttg gtatttaggg aaaagaacag      1560
     caacagtgga ataaaggaaa tagaggcagc agatggtaaa atggtgaatg aaacccaaga      1620
     agtaatgaga agatgggaag aatatataga gtggctatat gatggagaca cccgaccaag      1680
     tgaagacgag cttggactag aagaagagaa tacagttgca gaggatgaca aagggaatgc      1740
     tatactaacc agtgaggtag aagcatcagt gaaagagatg aaaaatggaa aggcagaggg      1800
     aattgatgag atcccggtgg agctgttgaa atcattacag agagaaggga aaaaggagct      1860
     gattggactg tataatcaga tatacatgac aggaaattgg ccaaaggatt tctgcgaaag      1920
     tatcctaata cctatagaaa agaaaaagaa cagcaaaaag tgtgaggaac ataggactgt      1980
     gagtctgata tcacatacag ccaaagtctt gctaaggacg ctcaacagaa gactatatgg      2040
     aaagttgaat gccgtaatgg gtgaggaaca gtttggtttc agacgaggag taggaactag      2100
     agatgccatt ggactactga gagtgatagg agagaggtac atggagaaga agagaaaggt      2160
     gtatgccata ttcattgatc tggagaaggc atttgaccgt gtgagatggg acaaattgat      2220
     ggcaatccta aggaaacatg gagttgactg gagggataga aaactaatta caaatttgta      2280
     cttgaaccag acagcaagag taagaatagg aggtgtgata agcgaagaaa ttgaactggg      2340
     aagaggtgta agacaaggat gctgtttgtc accaacactg ttcaatatct atcttgaaga      2400
     cataatcaag gaaagcttta atggaagcag aggagtttgt attgggggac ggcgagtaga      2460
     gtgtattaga tttgcagacg acatggttgt gatggcagaa agtgcaaaag agatggaaca      2520
     aatgttagat gacctaaaca caaaattaga agaatatgga atgaagatta acaagaagaa      2580
     aacaaaaagc atggtaattg gaggaaggaa cacaaaatgt cgtttaaaaa tagggggaga      2640
     agaaatagag caagtgcata gcttcaaata cttgggaagt atgataatgg atgatatgta      2700
     ctgcactgca gaaattaaga aaagaattgc catggcaaaa gaaggattca aaaggaaaca      2760
     gagattactt tgcggaccat taaagaaaga tctgaggaaa agacttgcca agtgttatat      2820
     ctggagtgtt gtgctgtatg gtgcggagac ctggacgttg aggaaggaag atgaaagaag      2880
     attggaggca ctagagatgt ggatatggag gagaatggaa caagtgaaat gggaagaccg      2940
     aataaggaat gaggaagtat taagaagagt tggagaagaa agaaacatgc tggaagtcat      3000
     taggaaaaga aaacgaaact ggattggaca ttgtttgagg agggactgtt tactgaagga      3060
     aggaatagaa ggaatggtga aaggaaaaag aggaagagga aagccaagat atcaaatgct      3120
     ggacaacatc caaggaaata aatatgaaga aatgaaaaga ttggctttgg acagagaaaa      3180
     gtggaagagg atcaacccat gacaagaaga ggatcaaccc atgacaagac ctgccgcaag      3240
     gcagaataca attgatgatg atgat                                            3265
//
ID   RTE-7_PPo   repbase;    DNA;    INV; 396 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-396
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3158-3158 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..375
FT                 /product="RTE-7_PPo_1p"
FT                 /translation="MGLAHKXRVAQRAMERAMLGVSLRDKIRNEEIRRRTK
FT                 VDDIALKISRLKWQWAGHICRASDARWGRKVLEWRPRKGTRSVGRPPPRWT
FT                 DDLVRTAGSRWMRKAEDRILWKALGKAYAQQWAGEGC"
XX
SQ   Sequence 396 BP; 102 A; 84 C; 143 G; 66 T; 1 other;
     atgggcctgg cccataagtt sagagtcgca cagcgggcga tggagagagc tatgctcgga        60
     gtttctctaa gggataaaat ccggaacgaa gaaattcgac ggagaaccaa agttgacgac       120
     atagctctca aaatcagtag gctgaagtgg caatgggccg gtcacatctg tcgggccagc       180
     gacgccaggt gggggaggaa agtcctcgaa tggaggccgc gaaaggggac caggagcgta       240
     gggcgtcctc cacccaggtg gaccgacgac ttagtgcgca cggcgggaag tcgttggatg       300
     cggaaggcgg aggaccgcat tctgtggaag gcattgggaa aggcctatgc ccagcagtgg       360
     gcaggcgaag gctgttgatg atgatgatga tgatga                                 396
//
ID   RTE-7_PXu   repbase;    DNA;    INV; 306 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-7_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-306
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3087-3087 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
SQ   Sequence 306 BP; 97 A; 58 C; 90 G; 61 T; 0 other;
     aaacgagacg gtgctccagc gcgtcgctat gagccgaaaa ttcatgcaga ccgtcaaaaa        60
     gcgtaaagtg gaatacttgg gtcatgtgct gcggcatgac aggtacaagt tacttcagtt       120
     gataatgatg ggcaagattg aaggcaagag acgcgctgga cgtaggaaaa aatcgtggct       180
     acgtaatatt agggagtgga cggggattag gtcagcagag gaactgtttc gccttgcgct       240
     tgacagaacc aaatattcca agttagcggc caaccttcaa gactgaagag gcactagaag       300
     aagaag                                                                  306
//
ID   RTE-8_Hmel  repbase;    DNA;    INV; 3267 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-8_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3267
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1018..3141
FT                 /product="RTE-8_Hmel_1p"
FT                 /translation="ATQGNVGFKSPKKSRASFRSLPTGDLSKEDTYCFLNA
FT                 LQHRITKIPIETTNVQSCYDILEEAITFSLSCKNKPVKKKQHRVFSDKTVA
FT                 LIKRRSELVNTKNKDKNMKKKISKIYKEVSKSIKTDYRQYRKNIITKNLKK
FT                 YRSTKKAFKKLNLSKDWIQKLQYDNKETKSRNDIIELATKFYQDLYKRRDN
FT                 EDXSKEHTNIANNIQTIEKIEELEVYNQIKQLKTDRSPGSDGITNEAIKLG
FT                 APLLTSHFTRLFNMVLDIETVPXQWGSSDIILLYKKGNPLDIKNYRPISLI
FT                 SNIYKLFASIILGRIRDKIDSKQPIEQAGFRSGFSTTDHIQTLDQVIEKYR
FT                 EYDQPLYLGFIDYNKAFDTISHQSIWNALKMCEVHPKYLNTIKSIYANCTS
FT                 AIKLETRGKRINIERGVRQGDPLSSKLFIAVLENVFKNIHWEFQGIYVNGR
FT                 FLTHLRFADDIVLLAERPKQLQSMLNTLDRESNKVGLEMNASKTKIMTNSA
FT                 KIPIKTKDCNIEYVDSYLYLGKRVSFDKVNNEEEIERRINITWKKFWSFKE
FT                 ILKGDYSINLKKTVFDICLLPCLLYASQTWIFTKKLRQKIQVTQRAMERSI
FT                 LKIKKIHKIRNEVIRSKTKLTDALSQALKLKWQWAGHISRYSDHRWTIQAT
FT                 XWKGPIGKRKVGRPTRRWADDIKEIAGINWTTTAKNREEWKRMEEAFTQTG
FT                 VHIQELDN"
XX
SQ   Sequence 3267 BP; 1371 A; 531 C; 558 G; 802 T; 5 other;
     aaagagctga gtctacttct ccagaaatct caatccaacc tcgtaaacaa tacgctacgt        60
     caaaaaccaa cagaataaac gcattcgatg ttatgagggt taggagtaat tcactatcgt       120
     cgggagcttc tacatcagaa agaaataaat agcatacagc catcagccgc cgaaacaatg       180
     ttaataagcc acaactacca cacaccttaa gtgacacaac tcatatattt cccaagccga       240
     gtggtcttcg tgggaaatta gaccaccacc cttcatccat aaatcagcca actaatttaa       300
     atcagaaacc aagagatacg tttaaaatct gcacatataa tgtaagatct ttatcgacaa       360
     cagagagata tttagaactt tcttatgcac tagaggatat aaaatgtgat attatcggtc       420
     ttagcgaaat aaggagacta ggatgcaaaa tagaagaaga tgagagttac attttttgtt       480
     atataggaca aaccaaaggt ttacatggag taggctttct tattaaaaaa tatttgaaaa       540
     atagaatagt aaactttatt ggaatatcgg aaagagtggc attactacaa ttgaaaatta       600
     ataaagtgaa catttcaatt attcaagcat atgctcccgt agaacgatcc agcgaaactg       660
     aaatacaaag attttataaa gatctaagaa cagctcatga attatccgat gataaagtac       720
     tagtcctcgg agattttaat gcaaaaattg gtcaacctag aaaggaagaa aatcttataa       780
     tgggaaatta tggatatggt tcacgaaatg aaaggggaga acaattaata aattatgcct       840
     acgaaaataa actgtcaatt ataaatacct tcttcaaaaa agactaagta gaaggtggac       900
     atggatgtca ccagaccgta ataccagaaa tgagatcgat tttataatga caaactgtcc       960
     taaattagtt tcgaactatg aagtcattaa taacataaaa tatgcaacgg accataggct      1020
     actcagggca acgttggttt taaatcgcca aaaaagagca gagcgagttt taggagtcta      1080
     ccaacaggtg acttatcaaa agaagacaca tactgtttct taaatgcgct tcaacatcgt      1140
     atcactaaaa tcccaataga aactacaaat gtccaatcct gttatgacat tctagaagaa      1200
     gccataactt tcagcctgtc atgcaagaat aaacccgtta agaaaaaaca acaccgagta      1260
     tttagtgata aaacagtagc attaattaaa agacgatccg aactagtgaa tacgaaaaat      1320
     aaagataaaa atatgaagaa aaaaataagt aaaatatata aagaagttag taaatcaatt      1380
     aaaacggact acagacaata cagaaaaaat ataattacca aaaatttgaa gaaatatagg      1440
     agcacaaaga aagcatttaa aaagttaaac ttaagtaaag attggattca gaaattacaa      1500
     tatgataata aagaaactaa gtcaagaaat gatatcatag aactagcaac aaaattttac      1560
     caggacttat acaaaagaag agacaacgaa gacahatcca aagagcacac aaacattgca      1620
     aataacattc aaacaataga aaagatagaa gaactagaag tatataatca aataaaacaa      1680
     cttaaaacag atagaagtcc aggttctgat ggaataacga atgaagcgat aaaactagga      1740
     gctcccctac taacgagtca tttcacacgt ttgtttaata tggtactcga catagaaact      1800
     gtcccaraac aatggggctc atcagatata atcctcctgt acaaaaaagg caacccgttg      1860
     gacattaaaa attatagacc aattagttta atctctaaca tatacaaatt gtttgcatca      1920
     ataatattag gccgcatcag agataaaata gacagcaaac aaccaatcga acaagcaggc      1980
     ttccgatctg gcttyagcac aacagaccat atacaaacac tcgaccaagt tatcgaaaaa      2040
     tatagggaat acgatcagcc actatactta gggtttatcg attataacaa agctttcgat      2100
     actataagcc accagtccat ttggaatgct ttaaaaatgt gtgaggtaca tccaaaatat      2160
     ttaaacacca taaaaagtat atatgctaac tgtacaagtg caataaaact ggaaacgaga      2220
     ggaaaacgaa taaacataga aagaggagtg agacaaggtg atccactgtc atcaaagtta      2280
     tttattgctg tattagagaa tgtgttcaaa aatatacatt gggaattcca agggatctac      2340
     gtaaacggcc gttttctgac tcacctvaga tttgcagatg acattgttct cctagcggaa      2400
     agaccaaaac aattacaaag catgttaaac acattagaca gagaaagtaa caaagtagga      2460
     ctggaaatga acgcctctaa aacaaaaata atgacgaaca gcgccaaaat acccattaaa      2520
     actaaggatt gtaatattga atatgttgac agctatttat atttaggcaa acgggtatca      2580
     tttgataaag taaataatga agaagaaata gaaaggagaa taaatataac ttggaagaag      2640
     ttttggtcat ttaaagaaat tttgaaagga gattattcca ttaatctaaa gaaaacagta      2700
     tttgatatct gtcttcttcc ttgcttattg tacgctagcc aaacatggat ttttacgaaa      2760
     aaactgagac aaaaaattca ggtaacacaa cgagctatgg aaagaagcat attaaaaata      2820
     aaaaaaatac ataaaataag aaacgaagta attagaagta agactaaact aacagacgcg      2880
     ttatctcaag ccctaaaact taagtggcaa tgggcaggac atatatcacg ctactctgat      2940
     catcgctgga ccatacaagc tacaaavtgg aaaggtccta taggaaagag aaaggtaggc      3000
     aggccaacaa gacggtgggc tgatgacatt aaagaaattg caggaataaa ttggacgaca      3060
     acagcaaaaa atagagagga atggaagagg atggaggagg ccttcaccca aacaggggtt      3120
     cacatccaag aattagataa ctaacagtac taacactagc attaaattca tttcatacta      3180
     acattaatat aagattaaca tcaattgaat tgtaaacatt tggttgtgaa ataaatgggc      3240
     ttaattatta ttattattat tataatt                                          3267
//
ID   RTE-8_LMi   repbase;    DNA;    INV; 3053 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3053
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3469-3469 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(572..1795,1776..2180,1969..3039)
FT                 /product="RTE-8_LMi_1p"
FT                 /translation="MGDLNAHVGSDRQGYENVMGAEGWGGRNVEGRKLLDF
FT                 CKRNGLVVGNSWFKKKESHKITWYSSDLTKRSLVDYMLYDWETKSSVTDIK
FT                 VIPSEALDSDHRLLVMNLRVGNECKRSEYQERRIKIWNLKEKEVKEEFQKK
FT                 IREKLPTDNPKTGEEEWMQFKSAMVESAVAVCGRTSNRKRCKETPWWNDRV
FT                 KEAVRRKNKAFRVWFQERNDLAREDYKQKKKEAAKVVTEEKKKWMVKWTEM
FT                 MEEDSRGNKKVLYGMVKNKRRGLREDVVMVDKNGNEIHNRETLKTVWKEYF
FT                 EDLLNANGHEDGSTVEDGKCSTGMEKDLTWREVEVAINKMKGGKAPGVDEV
FT                 SVEMVKAAGEVGKQWLYRVMRVIWKEKKTPEDWKKGLIVPIFKKGNRKECR
FT                 NYRGVTLMSHCKSICHTAKVYEKILESRIRAKVEREMREEQYGFRPGRSTV
FT                 DLIFAVRQLQEHHYEYGEDLLMAFLDIEKAYDSVCRKKVWEALEIRGVEKD
FT                 CKQSEGDVLWKYELCESGRGKNRMVQTSVWAEAGQCIVTPSLHCGYGKRRM
FT                 IVCVGKRFGKHLKLGEWKKTVSRVKEMYCGSMSCVKVGEGRTEWFKQVCGL
FT                 KQGSALSPLLFIVVMDDIMTKVAGKLEEGKMKAMVFADDLMVWGNKEEEIQ
FT                 EQLDAWEETVGEYGLKFNIRKCEFMVTSRKKDRPVKGITLGGEQLKKVESF
FT                 KYLGSVIEENGRNDKEIIERVRQAEVFLRSVRSLVWSKDVPQRSKGVLYQN
FT                 YYVPILTYASETWVTKKRDRSKIQAGEMKFLRSRIGVTRRDRMRNEKIREI
FT                 VREEPLQDRIERSRLQWYGHLKRMEEKRIPRRIHEIQIQKKRPRGRPRDRW
FT                 LKGVEDCVKKRGEDWARVKTERWWEDRTKWRGLCSKQTQPVAGNCAR"
XX
SQ   Sequence 3053 BP; 1129 A; 377 C; 984 G; 561 T; 2 other;
     gggaccgcta cggtagctgt gaaggcccta cgggaaccct gaaaagtggc ggctgacggg        60
     gctctggtga agctacgata ggcccagcaa gccagtagtg gatttggtat attgctttca       120
     aaacaggaac tggcctcgga gtggacggat ctcaaagacg acgacccagc tgtgcaaatg       180
     gactgagaat cggaacattg aacatwcgga agctaacagg gaagatggag gagatggtgg       240
     atctaatgca aagaagaaag ttggatgtac tagggttggc agagacaagg tggaaaggag       300
     aaggacgtat ggaactgcgg aaaggctacc gattgtactg gagtgggaat agtgaaggaa       360
     agagaatgga gtgggagtag ttgtgaggga tggtatgaag gaagaagtaa aggggataag       420
     tgacagaatt atgaaggtaa gagtaacact aaagggaaga agcttggaga tagcccaggt       480
     atatgcccct caaggcggat gtacagctca ggagaaggaa gaatttgaag aggagttaca       540
     acaataacta aatggtcaga gcatcatagt catgggggat ttaaatgcac acgtgggaag       600
     tgataggcaa ggatatgaaa atgtaatggg agcagaagga tggggtggaa ggaatgttga       660
     agggagaaag ttgctggatt tctgcaaaag aaatggatta gtggtaggga actcttggtt       720
     taagaagaaa gagagccaca aaataacatg gtacagcagt gatttaacaa agagatcttt       780
     ggtggactac atgttgtacg actgggaaac aaagagtagt gtcacagata taaaggtaat       840
     accatcagag gccttagata gcgaccaccg gctactggtt atgaacctga gggtagggaa       900
     cgagtgtaag agatcagagt accaggaaag aagaatcaaa atatggaatc tgaaggaaaa       960
     ggaagtcaag gaggaattcc agaagaaaat aagggaaaag ttgccaacag ataatccaaa      1020
     aacaggagaa gaggaatgga tgcagttcaa aagcgcaatg gtcgaatctg cagtagcagt      1080
     atgcggaaga acaagcaaca gaaagcgatg taaggagaca ccttggtgga atgatagagt      1140
     aaaagaagca gtgagaagga agaacaaggc attcagagtg tggtttcagg aaagaaatga      1200
     tcttgcaaga gaggattaca agcaaaagaa gaaagaagca gcaaaggtgg tcacagagga      1260
     aaagaagaag tggatggtga agtggacaga gatgatggag gaggacagca gaggaaataa      1320
     gaaagtacta tatgggatgg tcaaaaataa gagaagaggt ctgagagagg atgtggtgat      1380
     ggtggacaaa aatggaaatg agatccacaa cagggagact ctcaagacag tgtggaaaga      1440
     gtattttgag gatttgctaa atgcaaatgg acatgaggat ggcagcacag tagaagacgg      1500
     aaagtgcagt acaggaatgg agaaggacct gacttggaga gaagtggaag tggcaataaa      1560
     caagatgaaa ggaggaaagg caccaggkgt ggatgaagtg agtgtggaaa tggtgaaggc      1620
     agcaggggaa gttgggaaac agtggctgta tcgggtgatg agggtgatat ggaaggaaaa      1680
     gaagacccca gaagattgga agaaaggatt gatagtccca atattcaaga aaggaaatag      1740
     aaaggagtgc agaaattaca gaggagtcac actgatgtca cactgcaaaa gtatatgaga      1800
     agatattgga aagtagaatt cgagccaaag tcgagaggga aatgagagaa gaacagtatg      1860
     gattccgacc tggaagatcg acagtggacc tcatatttgc agtaaggcaa ctccaagaac      1920
     accattatga atatggggag gacctgttga tggcctttct agacatagaa aaggcgtatg      1980
     atagtgtgtg taggaaaaag gtttgggaag cacttgaaat taggggagtg gaaaaagact      2040
     gtaagcagag tgaaggagat gtattgtgga agtatgagtt gtgtgaaagt gggagaggga      2100
     agaacagaat ggttcaaaca agtgtgtggg ctgaagcagg gcagtgcatt gtcacccctt      2160
     ctcttcattg tggttatgga tgacataatg acaaaggtag cagggaaact tgaggaagga      2220
     aagatgaaag caatggtgtt tgcagacgat ctcatggtct ggggcaacaa ggaggaggaa      2280
     atccaggagc agctagatgc ttgggaagaa acagtgggag aatacggatt gaagttcaac      2340
     atccgtaaat gtgagttcat ggtaaccagc aggaaaaagg atagaccagt gaagggaata      2400
     acacttggag gtgaacagct gaagaaggta gaaagcttca agtacctggg aagtgtaatt      2460
     gaggaaaatg ggagaaatga caaggagatt atagaacgtg tcagacaggc agaagtattt      2520
     ctgagaagtg ttaggagttt agtgtggagt aaggatgtac cacagagaag taaaggagtg      2580
     ctataccaaa attattatgt tccgatattg acatatgcat cggaaacttg ggtgacaaag      2640
     aaaagagata ggagcaaaat acaagcaggg gaaatgaaat ttctacgaag cagaataggg      2700
     gtaacaagaa gagacaggat gaggaatgag aagatcaggg aaatagtgag agaggagccc      2760
     ttacaggata ggatagagag atcaagactg cagtggtatg gccatttaaa gagaatggag      2820
     gagaagagga tccccaggag gatacacgaa atacagatac agaagaaacg accaagagga      2880
     agaccaaggg atagatggct aaaaggagtg gaggattgtg tcaagaagag aggagaggac      2940
     tgggccagag tgaaaacaga gagatggtgg gaagacagga cgaagtggcg aggcttgtgt      3000
     tccaaacaga cccagcctgt ggctggaaac tgtgcaagat gatgatgatg tga             3053
//
ID   RTE-8_PPo   repbase;    DNA;    INV; 442 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-8_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-442
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3159-3159 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 442 BP; 140 A; 85 C; 129 G; 86 T; 2 other;
     tatattcatt aatcgtttgg attttatatt acgtaaaatg akaatgmact gttggtgttc        60
     gagcgaaaaa tcctgagacg catcttcggt gccgtgtgtg aagaaaacca atggcgaagc       120
     cgctacaatc aggagctcta tgacttgtac caagaactgc acgtggcggg acacattaaa       180
     ttgaacaggc tcagatgggc gggccacgtg gagcggatgg atgacactag agttcctaaa       240
     tgcgtcatga caagtaatcc cgagggccgt cgaagtcgag ggaggccaaa gctccggtgg       300
     atagacggca taagtagaga tgtgaaaacc gttggcatag cgaactggag gaccgtggcc       360
     agagataggc cgaaatggaa aaaaattgct ggaccaagcc aaggcccaca aagggctgta       420
     gagctacaga agaagaagaa ga                                                442
//
ID   RTE-8_PXu   repbase;    DNA;    INV; 370 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-8_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-370
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3088-3088 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..346
FT                 /product="RTE-8_PXu_1p"
FT                 /translation="RRMLRIPWTAKLTNKSILDQLKISTRLATTCYRRVLG
FT                 YFGHIARRNPDNLDKLVVVGKIEGKRSRGRSPTRWSDQVQAILGLNITTAL
FT                 RQAEDRTAWRQLVDTAVEAYQDKHDLQ"
XX
SQ   Sequence 370 BP; 115 A; 87 C; 98 G; 70 T; 0 other;
     gaggcgaatg ttgcgtattc cgtggactgc gaaactaaca aataagtcca ttctagacca        60
     actaaaaata tccaccaggc tagccactac atgctaccga cgagtccttg gatactttgg       120
     acatattgcc cggagaaacc ccgacaacct agacaaattg gttgtggtcg gaaagataga       180
     gggtaaaagg tcacggggtc gatcacctac tcgctggtcc gatcaagtgc aggctatatt       240
     gggacttaat atcacgactg ccctgagaca agccgaagac aggacggcgt ggaggcagct       300
     ggtcgacacg gccgttgaag cgtaccagga caagcacgac cttcagtaat gaagaatacg       360
     aagaagaaga                                                              370
//
ID   RTE-9_Hmel  repbase;    DNA;    INV; 2004 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   25-AUG-2014 (Rel. 19.09, Last updated, Version 2)
XX
DE   a RTE element from Heliconius melpomene.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-9_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-2004
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
RN   [2]
RP   1-2004
RA   Kojima N.F. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (25-AUG-2014).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           79..1941
FT                 /product="RTE-9_Hmel_1p"
FT                 /translation="RDSGPCRRQAENKASGYDIRSLNAKSASIQQACXRDR
FT                 NTDLQNLCAKLEQHAHKHEVKDLHQTIKSLTKTLSNRTWAIENSDGETVTD
FT                 LAAISETWKQYCQSLFKDLHSRDFVSTEPEDLEPIILRDEVRAAISHLKNG
FT                 KAIGSDAISTETIKASGDYGVDIFHALCDKIWQTGTWPQEWTHTVFVPLHK
FT                 KGSTKDCSNYRLIAIISHASKILLHILNERLKSFLSXEIAPEQAGFVKGKG
FT                 TREQILTVRQIIEKAREFNRPLYICFVDFSKAFDSVKWPKLWETLLAMGTP
FT                 KHLVHLLRRLYEDGTASVRTDNVLSSDFHLSSGVRQGCIVSPLLFNIYTEL
FT                 IMRITLENWPDGISVGGYRISNLRYADDTTLFSTSIRYMEELLQKMERVSL
FT                 DFGLKINRNKTKVMIVDRANNNSPEIKYIANCDVVQSYIYLGALISNSGSC
FT                 ADEIKRRMAISRTSMSKLRKIWRSRNITKTTKIRLVRTLVFPIFMYACETW
FT                 TLRKSDEKKIDALEMWCWRKMLGVSWTEFRTNESILRELDVKQRLSSIVKA
FT                 RILTFFGHISRQEDISMQRLVIQGKVEGSRPRGRSPMRWTDQVKAALDDPL
FT                 YECTRQTVNRVEWRRTVWRTTNL"
XX
SQ   Sequence 2004 BP; 640 A; 416 C; 449 G; 496 T; 3 other;
     aaagaaactc ttagacaaag cggtcgccac atccagatta cctgatattc ctgttaaacg        60
     acaacactgg atgagtgacg cgactctggc ccttgtagaa gacaggcgga aaataaggct       120
     tcaggttatg atataaggag tttaaatgcc aaatctgcaa gtatacagca agcatgtaka       180
     cgtgatcgta ataccgatct ccaaaacttg tgtgcaaaac ttgaacaaca tgcgcacaaa       240
     catgaagtta aagaccttca tcagacaata aaatcactaa ctaagacatt atccaataga       300
     acatgggcca ttgaaaactc tgatggtgaa acggtgactg atttagcggc aatctcagaa       360
     acttggaaac aatattgtca gtctttgttt aaagatcttc actctcgtga tttcgtttct       420
     acagagccag aagaccttga gccaattatt ttgagagatg aagttcgtgc tgccatttct       480
     catttgaaaa acgggaaagc gatwggcagt gatgcaatat cgactgagac catcaaagca       540
     tctggagatt atggtgtcga tatttttcat gcgctttgtg ataaaatctg gcagactgga       600
     acttggcctc aggaatggac tcacacagta ttcgtcccat tacacaaaaa aggctctact       660
     aaagactgca gtaattaccg tctgattgct attatttctc atgcaagcaa aatattactg       720
     cacattttaa acgaaaggct caaatccttc ctgtcaawgg aaatcgctcc agaacaggca       780
     ggtttcgtta aaggcaaagg cacccgtgag cagatattaa ctgtgcgtca aattattgaa       840
     aaggctcggg aattcaacag gccattatat atctgctttg tggacttttc gaaagcattt       900
     gactcggtta aatggccaaa gctgtgggag actttactgg cgatgggtac gcctaagcac       960
     ctcgttcacc ttctgcggcg tctttatgag gacggaacag cttctgttag gacagacaac      1020
     gtattgtcga gcgatttcca tctcagctcg ggagtacgtc aagggtgcat tgtatcgcct      1080
     cttctattta acatttatac agagctcata atgagaatca ctcttgaaaa ttggcctgat      1140
     ggaatcagcg ttggaggcta cagaatatca aatctgcggt atgctgatga taccacctta      1200
     ttttcgacca gcataagata tatggaagaa cttttacaaa aaatggaacg agtaagtctc      1260
     gattttggac tcaagattaa ccgcaacaag acaaaagtta tgattgtcga ccgtgcaaat      1320
     aacaactcgc cagagattaa atatatcgcg aattgtgatg tcgtacaatc atatatctac      1380
     ctcggagcgc tgatctcaaa tagtggaagc tgtgcagacg aaatcaagcg acgcatggca      1440
     atttctagaa catcgatgag taagttaagg aaaatatgga gaagcagaaa catcacgaaa      1500
     actactaaaa ttcgattagt caggactcta gtgtttccca tatttatgta cgcttgcgag      1560
     acatggacgc ttcggaagag tgacgagaag aagatagacg ctctcgagat gtggtgctgg      1620
     aggaaaatgc ttggagtgtc ctggacggaa tttagaacga acgagtccat actccgtgaa      1680
     ctcgacgtaa aacaacggtt gtcctccatt gtcaaagcac ggattctcac tttcttcgga      1740
     catatttctc gacaagaaga tatttccatg caacgccttg tgattcaggg aaaagttgag      1800
     ggtagcaggc cacggggtag atcccccatg cgatggacag accaagtgaa ggcagccctc      1860
     gatgaccctc tctacgagtg caccaggcag acagtcaatc gcgtagaatg gcgtcggact      1920
     gtgtggcgca ccaccaacct ttaaaaaaaa aaaagacgac cacgaccgct ctgtcaagag      1980
     cgaaacgaca aagaagaaga agaa                                             2004
//
ID   RTE-9_LMi   repbase;    DNA;    INV; 3100 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3100
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3470-3470 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(133..501,505..1278,1282..1800,1716..3062)
FT                 /product="RTE-9_LMi_1p"
FT                 /translation="MMDTSQSKCSRVTVSQSDLWGRRFVKNPTKEEGAKEG
FT                 MRCKIRVGTLNIGTLKGKSREIVDMMQRRKVNILCLQETRWKGDKAKLLAE
FT                 GYKLFYSSADKESRNGVGITVDKDLKEEVCGVDRIQNMSIKLTIEGDVITV
FT                 LSVYAPQTGCSEEEKDEFWKSLDGVTMEIPDNERVIIGGDLNGHVGERRSG
FT                 EDRIHGGWSYGERNAAGHKIAEYAVSFDLMIANTYFNRRREQLITYRSGDH
FT                 KSQLDYLLYRRKHTKEIKNTKVIYSESVAAQHKLVVADYEMVVGKRRKCVK
FT                 RGEQRIKWWKLKEEVLREKFKETVLREVKLPEDVQEWWSYNSNVITKAGKD
FT                 VLGVTTGKGPPEDKEAWWWNEEVQKAIKVKKDAKNNGTQEDRRIGKPTRLQ
FT                 KEQWQKERLRQWKRRMKSWKEDRGRQLLRIAKARDKAAKDITSVRQIKDES
FT                 GVVLHDLEKILNRWWEYFERLLNEENVREKYEDGDINEGMTQSISREEVEH
FT                 AMKKMKNGKALGADQIPIEAWKSLGEQGTDILWDLMQKIWKGERMPHAWRS
FT                 SILVPYIYSLGFNAEDLERRKNAACVEKQYTGSLYIRGKGDIQNCGNYRGI
FT                 KLMSHTMKIWERIIEKRLRLETEVCEEQFGFMPGRGTTDAIFALRQLMERH
FT                 REVQAELHMAFIDLEKAYDRVPRQEIWRCLRSKCXPEKYIRVVEDMYEGAM
FT                 TKVRSSAGATKAFPVRVGLHQGSALSPYLFDLVMDVLVKDVKKEAPWSMMF
FT                 ADDVVICEPTQEALQDKLEQWRKALEERGMRISRVKTEYMCTKDAKDLYIN
FT                 LQEEQLTLVKKFKYLGSYMQSDGGLEAEIQHRINSGWMNWRKLSGVLCDKK
FT                 VSCRMKGKLYKSVVRPAMLYSAETWPITKAQEKKMEVAEMRMLRWMSGVTR
FT                 KDRLRNEYIRGTVKVGPIGKKIQESRLRWYGHVQRRGEYYVGRRVEDLEIE
FT                 GSRRRGRPKLRWKDKVAGDLREKGWLREEALDRHLWKRRIQQSNADPT"
XX
SQ   Sequence 3100 BP; 1144 A; 440 C; 929 G; 586 T; 1 other;
     ctcgcctgca acaggtaacg agtggattga gtagctcgtt aactgttgtt gccggtccca        60
     agcccagata aaggaggagg gttggcgtca ggaagggcat ccggccagaa aaaacctgcc       120
     aaaaccaaaa caatgatgga tacttctcaa agtaaatgtt ccagagtaac agtctcccaa       180
     tcggatctct gggggagacg ttttgtgaag aatccaacga aagaagaggg tgcaaaagaa       240
     ggaatgaggt gcaaaatcag agtcggaact ctaaacattg ggacactgaa gggaaagagt       300
     cgagagattg tagacatgat gcaaagaagg aaggtaaata tcctgtgctt gcaagagacc       360
     aggtggaagg gtgacaaagc gaaactgttg gcagaaggat acaagttgtt ctatagcagt       420
     gcagacaaag agtccagaaa tggagtaggg attactgtgg ataaagatct aaaagaggaa       480
     gtctgtggag tggacagaat atgacagaac atgagcataa aacttactat cgaaggagac       540
     gtcatcacag ttctaagtgt gtatgcaccc cagacagggt gttcggagga agagaaggac       600
     gaattttgga aaagcctaga tggagtaaca atggaaatac cagacaatga aagggtgata       660
     attgggggag atttaaatgg acatgttggt gagaggagga gtggggaaga tagaattcat       720
     ggtggatgga gttatggaga aagaaatgca gcagggcaca agattgcaga atacgctgta       780
     tcttttgacc taatgatcgc caatacctac ttcaatcgta gaagagaaca acttataacg       840
     tacaggagcg gagaccataa aagtcagtta gactacttgt tgtacagaag gaaacacaca       900
     aaggaaataa agaataccaa ggttatatac agtgaaagtg tggctgcgca acacaaactc       960
     gtagtggccg attatgaaat ggtagtgggg aaaagacgta aatgtgtcaa gcgaggagaa      1020
     caaagaataa agtggtggaa actgaaagaa gaggtgttgc gagaaaaatt caaggaaaca      1080
     gtattaagag aagtgaaatt accagaggat gtacaggagt ggtggagtta taatagcaat      1140
     gtaattacaa aagcgggaaa agacgtgctg ggtgtaacaa caggaaaggg accaccagaa      1200
     gataaggagg catggtggtg gaatgaggag gtccagaaag cgataaaagt gaagaaagat      1260
     gcaaaaaaca atgggacttg acaggaagac aggaggatag ggaagcctac aagactgcaa      1320
     aaagagcagt ggcaaaagga aaggctgagg caatggaaga ggcgtatgaa gagctggaaa      1380
     gaagacaggg gcaggcaact cctacggatt gctaaagcaa gagataaggc ggccaaggac      1440
     ataacatcag tgaggcagat aaaggatgaa tcaggtgtag tattacacga ccttgagaaa      1500
     atcctgaata ggtggtggga gtactttgaa aggctattga atgaggaaaa tgtacgagag      1560
     aagtatgagg atggagatat aaatgaagga atgacccaaa gtataagtag ggaagaagtc      1620
     gaacatgcga tgaagaaaat gaaaaatggg aaggccctag gggcagacca aattccaata      1680
     gaagcatgga aaagtctggg agaacaggga actgatattc tctgggattt aatgcagaag      1740
     atctggaaag gagaaagaat gccgcatgcg tggagaagca gtatactggt tccctatata      1800
     taaggggaaa aggggatatc caaaactgtg gcaattatag agggataaaa ctgatgtccc      1860
     acacaatgaa gatctgggaa aggataattg agaagaggtt gcgtctagaa actgaagtat      1920
     gtgaagaaca gtttggattt atgccgggaa gaggaacaac cgacgcaata tttgcactaa      1980
     ggcaactgat ggagaggcac agagaagtac aagccgaact gcatatggcc tttatcgatc      2040
     ttgagaaggc atatgacaga gtgccgaggc aagagatatg gagatgtctg agaagtaaat      2100
     gcstgccaga aaaatatatc agggtggtag aagacatgta tgaaggtgca atgacaaaag      2160
     tcaggagcag tgcaggtgca acaaaggcat ttccagtgag agtaggacta catcagggat      2220
     ctgctctcag cccatatctc tttgaccttg tcatggatgt actagtcaaa gatgtgaaaa      2280
     aagaggcacc ttggagcatg atgtttgccg atgatgttgt aatctgtgaa cccacccagg      2340
     aggcacttca agacaagctt gaacagtgga gaaaagctct agaggaaagg ggaatgagaa      2400
     ttagcagggt gaaaacagag tatatgtgta caaaggatgc caaagatcta tatattaacc      2460
     tgcaagaaga acaacttacg ctggtcaaga aatttaaata cctgggctct tacatgcaaa      2520
     gtgatggagg actggaggcc gaaatacagc acaggataaa tagtggatgg atgaactgga      2580
     ggaaactgag cggagtactg tgtgataaga aggttagctg tagaatgaaa ggaaagcttt      2640
     acaagtctgt ggtgaggcct gcgatgctgt atagtgcaga aacttggcca attacaaaag      2700
     cccaagagaa aaagatggaa gtggcagaaa tgagaatgtt aaggtggatg agtggggtga      2760
     cacgaaagga tagactaagg aatgagtaca tcaggggaac agtgaaagtg gggcccatag      2820
     ggaagaagat ccaagaaagt aggctaagat ggtatggaca tgtgcagaga agaggggagt      2880
     actatgtggg gagaagagtt gaagacctgg aaatcgaagg atcaaggaga agaggaagac      2940
     cgaaactgag atggaaagac aaggtagcag gggacctacg ggagaaagga tggctcagag      3000
     aagaagcact ggatagacat ttgtggaaga gaaggatcca gcaaagtaac gccgacccca      3060
     catgacgtgg gaaaaggctg agatgatgat gatgatgatt                            3100
//
ID   RTE-9_PPo   repbase;    DNA;    INV; 3333 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-9_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-3333
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3160-3160 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Likely 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           285..3284
FT                 /product="RTE-9_PPo_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MYTESKKQRYPCDPRRRRHAVSGTDGVKYATGHGGVG
FT                 NQASHGHAATGTSLKLRIIQNVGTWNIRGLLQPGKLKILENELSRCNINIC
FT                 GISETHWKGSGHHLTETNIVYFSGNEDNSRNGVGFVIPKNVSKCVIGYEPV
FT                 SDRIISIKLKSSPVNINIVQVYAPTSTATCEDVEKFFSDLETITSRMPKRE
FT                 LLLVMGDFNSKIGADAHMLSSCVGKHGLGQRNERGERLVQFASENNLVISN
FT                 TFFQNHPRRLYTWISPDGKYRNQIDYIMIQSRWRTSIRNAHTLPGADCGSD
FT                 HQLLIAKIQLKLKASRTLYKPKRLEIRDTPKFTEIIERNWQQWLTTDSRTE
FT                 SPDKFWECAKDLLSSAVKQTTTPVTCKKQHWMSDETLALVEERRKMKTLGV
FT                 DIKTINKKSAQIQAACRRDYNNHLQNICGEIEAHADKSETKDLYQKIRLIT
FT                 KSLSSKTWAIENSQGQTVTEIEKISDTWRSYCQSLFEDPQSQCFEPTEPTE
FT                 EEKEPDILKDEIRAAIKHLKKGKAIGSDSIPIETVKASGEFGVEIFHGLCN
FT                 RIWKTGQWPQEWTHTIFVPLHKKGSTKLCSNYRLIALISHASKILLHILNE
FT                 RLKAFLSKEVAPEQAGFVKGKGTREQILIVRQIIEKSREFNKATYICFVDF
FT                 SKAFDSVKWPKLWKTLLEMGAPKHLVHLLRRLYEDGTASVRTDDQLSSTFH
FT                 PSAGVRQGCIISPLLFXTYTELIMRRTLEFWTDGVIIGGRKLSNLRYADDT
FT                 TLFTTSACLMEELLLRMERVSLEFGLKINRSKTKIMIIDRINNNLPDIAKI
FT                 ANCSVVNSYVYLGALISNSGGCIDEIKRRMAITRSAMDKMQKIWKNRDITK
FT                 ATKTRLVRSLVFSIFLYASETWTLRESEKQRIDALEMWCWRRMLRIPWTAF
FT                 RTNRSILEELGIKQRLSSIVRARILTFFGHVCRRNDESIERLVVQGKVEGT
FT                 RPRGRSPMRWTDQIRTAMDVPLHQCAKKAAYREEWRRLVKRVTDT"
XX
SQ   Sequence 3333 BP; 1086 A; 722 C; 776 G; 748 T; 1 other;
     aataggggag tgaaggggta cggtaccaac atctcaaccg acccaaatgt caacctcacc        60
     tgcacgcgtc tactgacggc gaagtccagt ccagccttcg cggtactccc tgctagacaa       120
     cggacgaggc tctggcgacc gaacagtggc gggataacca cacgcccagc tgagaaacta       180
     gctggaagag gctacagtaa gccttgggat ataaatggac ccaaaaagtg ctggtgcaga       240
     aggcaagggg aaaccactgc atctactgtc ccaagatagt tatcatgtat acggaatcaa       300
     agaaacaacg atacccatgc gacccgcgta ggcggcgcca tgccgtgtcc gggacggatg       360
     gtgtgaagta tgctaccggc catggtggtg taggtaacca ggcatctcat ggacacgctg       420
     ctactggaac atctctaaaa ttgagaatta tacaaaatgt agggacttgg aatattcgcg       480
     gattacttca accaggaaaa ctgaaaattt tagaaaatga gttatcacga tgtaatataa       540
     acatttgtgg gatcagtgaa acacattgga agggtagtgg ccatcatctc accgagacca       600
     acatagtgta cttctccggt aacgaggaca acagtagaaa cggagttggc tttgtgattc       660
     caaaaaatgt atctaaatgt gtaatcggct atgaacctgt aagcgacaga ataataagca       720
     ttaagctgaa gtcatcgccc gtaaatatca atatcgtgca ggtttatgcc ccaactagca       780
     ctgctacatg tgaagatgtt gaaaagttct tctctgatct ggaaacaata acctctagga       840
     tgccaaaaag agaacttcta ctagtcatgg gtgactttaa ctccaaaata ggtgcggacg       900
     cacatatgct cagctcatgt gtagggaaac atggtcttgg acaacgcaac gagagaggag       960
     aacgtctcgt acaatttgcc tcagaaaaca acctggtgat atcaaacact ttcttccaaa      1020
     accaccctcg aagactttat acctggatat caccagatgg caaatatcgc aaccaaatcg      1080
     actacatcat gattcagtca cgatggagaa catccatacg gaacgcacac acgttgccag      1140
     gagctgactg tggctcagat catcagctac tcatcgcaaa aatccagtta aagcttaagg      1200
     cgtctagaac tctgtataaa cccaaaagac tggaaataag agacactcca aaatttacag      1260
     aaatcataga acggaactgg caacagtggt tgacgacgga ctccagaaca gaaagtccgg      1320
     ataaattttg ggagtgcgca aaagatcttc tcagttccgc tgtaaaacag acaacaacac      1380
     ctgtaacatg caaaaagcag cactggatga gcgatgaaac cctagcactg gtcgaagaaa      1440
     ggcggaagat gaagacttta ggagtcgata taaaaaccat taataaaaag tccgcacaaa      1500
     tccaagcagc atgtagacgt gactataata atcacctaca aaatatttgt ggagaaatag      1560
     aggcccatgc agataaaagt gagacaaagg atctttatca gaaaatccgg ctaataacca      1620
     aatcgctatc ttcaaaaaca tgggctatag agaatagtca aggacaaaca gtgactgaaa      1680
     tagagaagat ctcggatacc tggagaagtt actgtcagtc attgtttgaa gatccacagt      1740
     cacagtgctt tgaaccaaca gaacccacgg aggaagaaaa ggaaccggac attcttaaag      1800
     acgaaatcag agctgcaata aaacacctaa aaaaagggaa ggccataggg tcagattcta      1860
     ttcccattga gactgttaaa gcctcgggcg aattcggagt agaaatcttt catgggcttt      1920
     gcaacaggat ctggaaaact ggacaatggc ctcaagaatg gacacacact atcttcgttc      1980
     cattacataa aaagggttca acgaaattat gcagtaacta ccggctcatt gcccttatct      2040
     cgcatgctag caaaatctta ctgcatatat taaacgaacg attaaaggcg tttctttcta      2100
     aagaagtggc acctgaacaa gcaggctttg taaagggtaa aggcacaagg gagcaaatac      2160
     ttatagtgcg ccaaattata gagaaatccc gcgagtttaa taaagcaact tacatctgct      2220
     ttgtagattt ctcaaaagcc ttcgactccg tgaaatggcc taagctctgg aaaaccctgt      2280
     tagaaatggg cgcacctaaa cacctcgttc atctgttgag gcgcctatat gaagatggta      2340
     ctgcgtcggt caggacagac gatcaattgt caagtacctt tcaccctagt gcaggcgttc      2400
     gtcaaggatg cataatatct ccactgctct tcamtaccta cacagagcta ataatgaggc      2460
     gtactcttga attttggact gatggagtca taattggagg ccgcaagcta tctaacttgc      2520
     gctacgcgga tgacaccacc ctttttacga ccagtgcttg cctcatggag gagcttctct      2580
     tgaggatgga gagagtcagt ctcgagtttg gcctgaagat caaccgcagc aagactaaga      2640
     ttatgattat tgaccgcatt aataacaact taccagacat cgcaaaaatc gcgaattgtt      2700
     cagttgtaaa ttcttatgtt tatcttggtg cgttgatctc gaacagcggc ggttgcatcg      2760
     atgagataaa gcgacgtatg gcaatcactc gatcagcgat ggacaaaatg caaaaaattt      2820
     ggaagaaccg tgacattaca aaagcaacta aaacccggct tgtaagatca cttgtgttct      2880
     ccattttctt gtacgcctct gaaacatgga ccctacgaga gagcgagaaa cagaggatag      2940
     atgcgctcga gatgtggtgc tggagaagaa tgctgagaat accttggact gcattccgaa      3000
     ctaaccggtc aatacttgaa gaactcggca tcaagcagcg tctgtcttcc attgttcggg      3060
     ctcggatact cacttttttt ggtcacgtct gcaggcgtaa tgacgagtcc atagaacgct      3120
     tggtagtgca gggtaaggtg gagggcacca gacctagagg aagatcgcct atgagatgga      3180
     ccgaccagat tagaacggct atggacgtac ccttgcatca atgtgcgaaa aaagcagcgt      3240
     acagggagga gtggcggcgt cttgtgaagc gggtcactga tacgtgataa ccacgacgag      3300
     tctgtaaaga ctcaagcgac aaagaagaag aaa                                   3333
//
ID   RTE-9_PXu   repbase;    DNA;    INV; 332 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-9_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-332
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3089-3089 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..286
FT                 /product="RTE-9_PXu_1p"
FT                 /translation="TNKSILEELGIKQRLSXIVRVRILTFFGHVCRRDDES
FT                 IERLVVQGKVEGNRPRGRSPMRWTDQIRAAVDVPLHQCTKKAATREEWRRL
FT                 VKRVTDT"
XX
SQ   Sequence 332 BP; 94 A; 77 C; 95 G; 64 T; 2 other;
     gacaaacaag tcaatcctcg aagaactcgg catcaagcag cgtctgtcat scattgttcg        60
     ggttcgcata ctcacwtttt ttggtcacgt ctgtagacgt gatgacgaat ccatcgagcg       120
     cttggtggtg caggggaaag ttgagggcaa cagaccacga ggaagatcgc ctatgaggtg       180
     gaccgaccaa atcagagcgg ctgtagatgt ccccctacac caatgtacta aaaaggcagc       240
     gactagggag gagtggcggc gcctggtaaa gcgggtcact gatacttgat gaccacgacc       300
     agtctgacaa gactgtaacg acgaagaaga ag                                     332
//
ID   RTEX-10_RPr repbase;    DNA;    INV; 3494 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-10_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3494
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3492-3492 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3222
FT                 /product="RTEX-10_RPr_1p"
FT                 /translation="CVETWLVDKPLNCPPVLNGFQLAAFSGAVKEKSRGRA
FT                 SGGLMVFVRSALFKFLILDQSPWWIIIKFISNIFSFILVLVYFRPSLDLNV
FT                 VLDLFEVTLQQILPFHNCMHLIGGDFNCRVGSLQNNDEELFNNTFLSAEHG
FT                 SCDRICNSKGTSLIEFMELNSFVLVNGRTLRDTPSQFTYVSPQGQSVVDLV
FT                 WIDSLHLAEVRDLEVLGIVSGSDHFPVIVSLNCVIVSDTSSPCNYDPKSSV
FT                 KVIAWDKDKADVFINCLLFSPRICINFDKETINSIYENLYSALMESASQTG
FT                 MFSTKLIRRDVTVTHIKNLWYDEECKKMKVKVRKLLRFCKRANFVHFLKLI
FT                 YLDTKARYKNLIKYKKRSFQKSLLDSIANVKDTRTFWGTINKYRLRPALCS
FT                 FISVDAWENYYKLIYPLRIYDSTLFFGVGHPILDAPITHDEIMKSIQKCRS
FT                 SKAPGPDQISNEFYKHLPQNWLLYLEVLFNKVFSSEVLPLKWSQVSQFMLY
FT                 KKGDKFDLGNYRGICLANCILKIFMQIILNRLLIWDQEVAVIPECQNGFRP
FT                 GRGCNDNIFVLSTVIQCHLRLPKRKIFTAFIDLKRAFDSLPHSKLFHKLHS
FT                 AGISPKIINILRNLYENASFKIKVNGNFTSELPLSEGVMQGEVLSPFLFSL
FT                 FIADIENFFRENNARGINIDGKSDVILLLYADDMVILSDSHIDLNKKLDIL
FT                 KNYCVLNGLKVNTEKSKIVIFHKGRLRAERYKFFYDDVMLDTVDNFVYLGV
FT                 RFNQSSLFLETARSAIGKANIAAGSVINILTKSKCDSWVSRVRVFNAIARS
FT                 VMLYGAQVWSLRYVDLLERAHLNFYKRLFQLSRNTPDYIIRTEFGITHVLL
FT                 QIVKITVGWIKNILSMESTRLPRICFFRLLELSTAPVKYNWFLQLRVLLGK
FT                 YGVSFEASDLNGLSAGEIVSKLHTNLLQLDRQSLEYSRFSDIYNSLPLLAG
FT                 VPQEYINVRQPFSVTRLIAQMRTSNKYFIKISLQKSIHIINCKLLCTVCDM
FT                 HVEEDFSHLFAVCPLYASIRIYYFKSNLPTDVQRDLLELMYSCEKSKLLIV
FT                 YNYAFNVLKLRSFLLNE"
XX
SQ   Sequence 3494 BP; 1049 A; 499 C; 665 G; 1280 T; 1 other;
     tgtgttgaga catggttagt ggataagcct cttaactgcc cacctgtttt gaatggtttt        60
     caattagcag ctttctcagg agctgtcaag gagaagagtc ggggtagagc aagtgggggg       120
     cttatggttt ttgttagaag tgcgttattt aaatttctta ttttagatca atcaccatgg       180
     tggattatta ttaaatttat ttcaaatatt ttttctttta ttttagtttt ggtttacttt       240
     agacctagtt tagatctaaa tgttgtctta gatttatttg aagtaacatt gcaacaaatt       300
     ttgccctttc acaattgtat gcatttaatt gggggagatt ttaactgtag agtgggcagt       360
     ttacaaaata atgatgaaga gttatttaat aatacattcc tttcagctga gcatgggtct       420
     tgtgatagaa tctgtaatag taaaggtact tctttgattg agtttatgga attaaattct       480
     tttgtgctag taaacggtag aacgcttcgk gacacgccct ctcaattcac ttatgttagt       540
     ccgcaagggc agagtgttgt agatttagtc tggattgaca gtctgcactt agctgaagta       600
     agggatttag aggtcctagg tattgtatct ggatcggatc actttcctgt tatagtcagt       660
     ttaaattgtg tcatagttag tgatacaagc tcgccatgca attatgatcc taaaagttct       720
     gtaaaagtga ttgcctggga taaagataaa gctgatgtgt ttattaattg cttattgttt       780
     tcgcccagaa tatgtattaa ttttgataaa gaaacaataa attctattta tgaaaatttg       840
     tactcagcct taatggaatc tgctagccaa actggtatgt tttctaccaa gctgatcaga       900
     agggatgtta ctgtaactca tataaaaaat ctttggtatg acgaagagtg taagaaaatg       960
     aaggttaaag ttaggaaact tttacgattt tgtaaacgcg ccaattttgt gcatttcttg      1020
     aaattaattt atttagatac taaagcaaga tataaaaact tgattaaata taaaaaacga      1080
     tcttttcaaa aatctttact agatagtatt gcaaacgtaa aagacactag gactttttgg      1140
     ggaacaataa ataagtatag gcttagacca gcgttatgtt catttattag tgttgacgcc      1200
     tgggagaatt attataaatt gatttatcct ttgaggattt atgatagtac cctattcttc      1260
     ggtgtcggcc atcctatact ggacgcccca attactcatg acgaaattat gaaaagcatt      1320
     caaaaatgta gaagttctaa agctcctgga cccgatcaaa tttcaaatga attttacaaa      1380
     caccttcctc aaaactggct tctgtatttg gaggttctgt ttaataaagt tttttccagt      1440
     gaggttctcc cgcttaagtg gtctcaagtt tctcaattta tgctgtacaa aaaaggagat      1500
     aagtttgatt taggtaacta tagaggcatt tgtttagcta attgtattct taagatattc      1560
     atgcaaatta ttttgaacag actgttaata tgggatcaag aggttgcagt aattccagaa      1620
     tgtcaaaatg gttttcgacc gggtcgggga tgcaatgata atatttttgt acttagtaca      1680
     gtgattcagt gtcatctaag attgccaaaa aggaaaattt ttactgcttt tattgatctt      1740
     aaaagagcat ttgattctct gccccactct aaactatttc acaagcttca ctctgcggga      1800
     atttctccca aaataattaa catattaagg aacttgtatg aaaatgcctc tttcaaaatt      1860
     aaggtgaatg gcaattttac ttctgaatta cctctgtctg aaggggttat gcagggggag      1920
     gtccttagtc cttttctttt ctcgcttttc attgcggata ttgagaactt ctttcgggaa      1980
     aataacgctc ggggtattaa catagatggt aaatctgatg ttatcttact cttgtacgca      2040
     gacgatatgg ttattcttag tgactctcac attgatttaa acaaaaaatt agatatttta      2100
     aagaactact gtgttttgaa tggcttaaaa gtaaatactg aaaagtcaaa aattgtaatt      2160
     tttcacaagg gaagactgag ggctgaaagg tataagtttt tttatgatga tgtgatgcta      2220
     gatactgtag ataactttgt ctatttgggc gtgcgattca accaatcttc tttgttttta      2280
     gagactgcca ggtcagcaat tggcaaggca aatatcgctg ccggatcagt tataaatatc      2340
     ttaacaaaat caaaatgtga tagttgggtc tcgagagtga gggtatttaa tgctatagct      2400
     cgaagtgtaa tgttgtatgg ggctcaagtc tggagtctaa gatacgtcga tttgttggag      2460
     agggcgcatc tgaactttta taagcgattg ttccaattat ctcgaaacac ccccgattat      2520
     attattagaa ctgaattcgg tataactcat gttttgctgc aaattgttaa gattactgtc      2580
     ggttggatta aaaatatatt atctatggag agcacaagat tgccgcgtat ctgttttttt      2640
     agacttttgg agttgagtac tgctcctgtg aaatataact ggtttcttca gttgagagtt      2700
     ttgttgggca aatatggtgt ttcttttgaa gcgtctgatc tcaatggact ttctgctgga      2760
     gaaatagttt caaaacttca tactaatttg ctccagttgg acaggcaatc tcttgaatat      2820
     tcccggttta gtgatattta caatagccta ccactcttgg ctggagtacc tcaagagtat      2880
     attaatgtta gacaaccctt cagcgtaact aggttgattg ctcagatgcg aacttctaat      2940
     aaatatttta tcaaaatatc tttacagaaa tccattcata tcataaattg taaattgttg      3000
     tgcacagttt gtgatatgca cgttgaagag gatttctcgc atctgtttgc tgtttgtcct      3060
     ctatatgcct ccataaggat ttattatttc aaaagtaatc tgcccactga tgtacaaaga      3120
     gatctattgg aactaatgta cagttgcgaa aaatcaaaat tacttattgt atataattac      3180
     gcgtttaatg tattaaagtt aaggtcattt ttactaaacg aataatttca gttgttaaag      3240
     ttttgttttt gtgttttaaa aaggttttat attttttttg tttcctttag acagaatctg      3300
     taaatattat tttactattt ttattacttt ttgtttgttt attttaattt cattaatgat      3360
     attgtttttt ttattttact tttattatca agtttgatca tttcatttaa ttattatatt      3420
     atgtatgtaa tttgtttact gaaactccgt ttgtaaaagg ctcaggcctt aaggacaaat      3480
     gaataaataa ataa                                                        3494
//
ID   RTEX-11_RPr repbase;    DNA;    INV; 2380 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-11_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2380
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3493-3493 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 3'-end is not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(469..1389,1393..1956)
FT                 /product="RTEX-11_RPr_1p"
FT                 /translation="MAEKITLDEIANLIKGLQVEIRQGNEQFQIYREQLEN
FT                 TKQRVSDLEGVQIDIIRVLDETQSEVKYLRESQRRNNLMLFNIKEEQGETT
FT                 SDLLKLVRDIFLTKLEISLMSTDISNIYRVGKIKGERPILIKLHCLWQKFE
FT                 ILKAAKKLRGSNISISEDFSPEVREDRKQLVPYLLKAREENQLAYIRRNKL
FT                 VVNGSQYSVENCKKLFKLTGEVQCSSVSLNSESISQVDKVISSEEVVLPHT
FT                 SSTEKDSPRPVYKGNRGTPRSSKRKAKSKTSPPLRKFNSIESFIKRYEQKT
FT                 EVGVKEVNAVKDKAKQRIGSFNVFEQSGNSNICNKSMFNVENLSFGFWNVN
FT                 GFKNLFQLDNKEXDMLCKLNVICLTETWALNEVKLPNYLTGYNVFCSKAIR
FT                 DKSRGRASGGLLVLIQNVINDVEIIEITQLYIIVRFSLNDKQFILGNFYWP
FT                 PTADIEYCTESLDRVLFDLEVKYSSNICKVFGGDYNCRIGNLNSFENDFF"
XX
SQ   Sequence 2380 BP; 812 A; 293 C; 475 G; 795 T; 5 other;
     gttctgtatt agctctgaca cgagtaagat cggctctgta tttttcgaag tgtaactttg        60
     tttatacgag gagttaagtt gtgatttttg ataagtacgt tcaatttaac tcatccgtta       120
     ttgtggtaaa atttcaagta tttttgtcga acagtttttg agatataagt gattgaaata       180
     tttaattaaa ggtaacttat tacatatagc agtgattagt gagttggagg ggatagaagc       240
     gaaccgatat agtgactgtg gaaggggtat ttgttcagaa gtttacgagg attgtaaatg       300
     aacaattgct atttgaaccc aacttcgcat ctttaatatt tctaaagtaa acataatatt       360
     ttttgttttt ctttcttttt attatatttc aacaaattta ctgacttttg agagttctga       420
     tattaaattt attttaattc aatttagaaa ttttttaata aactgaatat ggctgaaaaa       480
     attacattag atgaaatagc gaatttaatt aaaggtctac aggttgaaat tcgtcaaggg       540
     aatgaacaat ttcaaattta tagagaacaa cttgaaaaca ctaagcagcg agtttcagat       600
     ttggagggcg tacaaatcga tataataaga gttttagatg aaacacaaag tgaagtaaaa       660
     tatttaagag aatctcaaag aagaaataat ttaatgttat ttaacataaa agaagagcaa       720
     ggcgaaacta catcggacct tctgaagtta gtgagagata tatttctaac taaattggaa       780
     atttcattga tgtcaactga tatcagtaat atttatagag tgggcaaaat taaaggtgaa       840
     cggccgattc ttattaaact acattgtctt tggcaaaagt ttgaaattct caaggcagca       900
     aaaaaattaa ggggcagtaa tatttctatt tcagaggatt tttctccgga agtgagagaa       960
     gatagaaaac aattagtgcc atatctgctt aaggctcgtg aagaaaatca gctggcttat      1020
     atcaggagaa ataaactcgt tgttaatgga tcccaatact ctgttgagaa ttgtaaaaag      1080
     ttatttaaac taaccggcga ggtccaatgc agttcggtat cgctaaattc tgaaagtatt      1140
     tctcaggtag ataaagttat ttcaagcgaa gaagttgtgt tacctcatac tagctctacg      1200
     gagaaagata gccctcgacc tgtatataaa ggaaaccggg gaaccccaag atcctcgaag      1260
     cggaaggcga aatcaaagac ctctcctccg ttaagaaaat tcaattcaat agagagcttc      1320
     attaagagat atgaacagaa aactgaggtg ggagtcaaag aagtgaatgc agtgaaagat      1380
     aaggctaaat agcaaagaat aggttcgttt aatgtctttg aacaatcagg taactctaat      1440
     atatgtaata aatcaatgtt taatgttgaa aatctatcat ttggtttttg gaatgtgaat      1500
     ggttttaaaa atctgtttca attagataat aaggaaakag atatgctctg taaattaaat      1560
     gtaatttgct taacagaaac ttgggctttg aatgaagtga aattacctaa ttatttaacc      1620
     ggatataatg tgttttgtag taaagctatc agagataagt ctcgagggcg cgctagcggc      1680
     ggactgctgg tattaattca aaatgttatt aatgatgttg aaattatcga gattacccag      1740
     ctttatatta tagttcgctt ttctttaaat gacaagcagt ttattttagg aaatttctat      1800
     tggccaccta cagccgatat tgaatattgt actgagtctc ttgatcgggt tttgtttgat      1860
     ttagaagtga agtattcaag taatatatgt aaagtatttg gaggggacta taactgtcgc      1920
     ataggaaatt taaattcttt tgaaaatgat tttttttgaa ggccttaata ttactgggga      1980
     gagatttgtc ttagataaaa aaattaatct cagaggtagc aagcttattg atgtaatgga      2040
     gtctagagga atgtttgtgt gcaatggtag aagtgtttcg gataccccag ccaattttac      2100
     atacgtcagt agtactggtt gcagtattat tgaccaagtt tgggctgatt tggcatcatt      2160
     aaacataatt aaagawttta aagtaattaa ttttactgaa ctatcttgtc atttgctgtg      2220
     tcaacttgaa tttaatattg atattgctgg gagttgtcct ggcgaagtaa gtgctaatgc      2280
     cgaatwttam gaatctgtcc aatggaatat tgatagtgta gggttgtttc aaaataattt      2340
     tacataatat atatttcwat agctctgatg tagatgatct                            2380
//
ID   RTEX-12_RPr repbase;    DNA;    INV; 5280 BP.
XX
AC   .
XX
DT   07-AUG-2012 (Rel. 20.10, Created)
DT   07-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-12_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5280
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3494-3494 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(441..1451,1455..3563,3500..4843)
FT                 /product="RTEX-12_RPr_1p"
FT                 /translation="MSSPLTLNDIANLIKGLQGEIRQNNEQFKFYKEQLEE
FT                 SKKRISALECANVDIIKAIDEFEQSNKKFNDFYRKNNLIMFNIFESPDETI
FT                 SDLIKAVIEVFSSKINILLEPRDINSAFRLGKMKGNRPILIKFQCFWQKIE
FT                 ILRASRNLKGSNIRISDDYSADVRERRKKLIPYLIKARQENHMAILKKDKL
FT                 IINGHKISLDKCENLFRINKGAEETAEVEKLRNDIQMEEGKLLQEGSDHPD
FT                 NKICKETREPEELGNNTSSGNKNKNEQNITVDLVQAGTSSRKDNSNVITPR
FT                 RNKRKGLPRSSPLRKVNSIESFIRRFETKSKLEEKQEKLDGSNTSQRKCSD
FT                 SAVCLGCDVRDSDNGNFKICFWNVDGFQNLFNLDINEQYLFSQYHVICLVE
FT                 TWVMSTEVNLPNYLNEFNLYMSRAVREKSRGRASGGLMVLVRKSISDVEII
FT                 ENSNLYIVIKFSLGKEVVILGNVYLPPSADTDYCIESVDHLLFDIETKYPN
FT                 CCYKIIGGDFNSRIGNLNSFDEELFEGLALCGERCASDGKVNARGKLLVEM
FT                 MESYGMFVTNGRSPSDSPGNFTYISRSGCSIIDLVWTNLHTLSSIIDFSVV
FT                 NSSLHSNHLLCLVSINLNNTLNQFKQYKVNKYNEIIKWDSSKLYLFQNSLC
FT                 CNNLYFNSQNVEDLNNNLLVAIYKAALDSGMLIKRRFNDRQIQYSNKPWFG
FT                 GELNDLKKIVKNKYKLFKRDPSNSDLLEGYLLSRKSYKNLIFKKKKSYIEN
FT                 MISKFSNVKNSSDFWKTVKYFSVKSLKTNCISIATWNGFLKAXYPHRISTC
FT                 NEFYSVSDPFLDRNIDLAELQVALKFCKNSKSPGTDKVPNEIFKHLPPEWE
FT                 HYLLNMFNTILECEQVPKLWSKIKMTMLYKKGDIQEPENYRGIALINTVCK
FT                 LFTGIVSRRIYDWAEANHLLPEEQAGFRRGRSCLDHLYTLYSMINIHTRLK
FT                 KSYFLAIFIDFKKAFDSVNQEKLWLKLFNFGLSGKLIRIIKNMYDSACLFL
FT                 EENCESTDYIEISQGVLQGDCLVHSSLYSISVILSGCFTGRLFSPLLFILY
FT                 ISDIVDFFVKHDHIGLNINNKKELMMLLFADDLLIFGESWVDAIKKISTLK
FT                 KYCADNSITLNSEKTKIIPFSKSNKLKNLKKIMWNDKPLDTVKKYTYLGVP
FT                 FTFNSKFKFAANHFVSKSTPQVGKVLSILAKGKSNSWESKVKLLDAIVSST
FT                 LLYGSEVWAFRYLYVVERTQVKFFKQLMGWAKNTPDYLVRLESGRPPLSVQ
FT                 VFKRTLNYWLRLLKMSEDRLPRICFLRLRELHNSGYNKVEWNWFTQLSEWL
FT                 SXIGESDIIHSDSVEYITKNIPDLIEKWTNHAISLDVERAIHSGYSHIYRE
FT                 ISLLGIPEEYIHYTCAIDKLRVLSQLRVSSDRFLRIRNRNGYHSIETSSTC
FT                 TLCNLNCKESLEHILLVCPIYSSLRQHHLSEYMFSVDNYTNLTAILSICSI
FT                 RQLNSVYQYTIEVLKLRSFIINE"
XX
SQ   Sequence 5280 BP; 1855 A; 709 C; 956 G; 1754 T; 6 other;
     gagttctgtg ttgtgtttaa aggtgttcac atcgtgtctt gcttttttta gtttttctak        60
     tggttgtagg tcacttcagt gagtatattt tggcagaaca atagtttaat atcttctgca       120
     aattctgtca aattttaaaa aatatttatc gagtggttta cgagttatta atgaaaacat       180
     ttttatatta actttaaaat tactcaataa tagtgtctac atagtcagtg gtgggggaag       240
     ccaagatact gtgcactcta ctatctctat ctaacggaat gtacattgga acataaacat       300
     ttacaaactc ttttgtaagt aactttttga ttattattga aacacgctgg gatatgaaca       360
     tttaacagct gataataata aatgatatag gcggctccta ataaaattaa tttaatattt       420
     ttatcacaat aatatcaaat atgtcttccc cattgacact gaatgatatt gccaatttaa       480
     ttaaaggcct tcagggtgag attcgtcaaa ataacgagca atttaaattt tataaagaac       540
     agttagaaga atcgaagaaa agaatctctg ctcttgaatg cgctaatgta gatataatta       600
     aggcaattga cgaatttgag caatctaata aaaaatttaa tgatttttat agaaagaata       660
     atttgattat gtttaatata tttgaatcgc cagatgaaac tatctcagac ctgattaaag       720
     cagttataga agtgttttca tcaaaaatta atattttact agaaccacga gatatcaatt       780
     cagcctttcg attgggaaaa atgaaaggga atagacctat tttgattaaa tttcaatgtt       840
     tttggcagaa aattgaaatt ttaagagcct ccaggaatct taaggggtct aacataagaa       900
     tctcagatga ttattcagct gatgttagag aaagaaggaa aaaattaatt ccttatttga       960
     taaaagctcg gcaagaaaat catatggcaa ttttgaaaaa agataaacta ataattaatg      1020
     ggcataaaat ttctctggac aaatgtgaaa atttatttag aattaataaa ggagcggaag      1080
     aaactgcaga agtggaaaaa ttaaggaatg atattcagat ggaagaagga aagttgctac      1140
     aggagggaag tgatcaccca gataacaaaa tatgcaaaga aactagggaa cctgaggaac      1200
     tgggcaataa tacttcctct gggaacaaga ataaaaacga acaaaatatt acagtagatt      1260
     tagtgcaagc gggtacttct tcaaggaaag ataattctaa tgtcatcact ccaagaagaa      1320
     ataagaggaa gggtctacct agaagctcgc ccttgagaaa ggtcaactcc atagagtcct      1380
     ttattaggcg atttgaaacg aaatctaaac tagaggagaa gcaagagaaa ctggatggct      1440
     ccaacacctc atagcaacga aagtgttcag atagtgctgt ttgtctaggt tgtgatgtgc      1500
     gtgatagtga taacggaaat tttaaaattt gtttttggaa tgtagatggt tttcagaatt      1560
     tgtttaattt agatatcaat gagcaatatt tgtttagtca atatcatgta atatgtctag      1620
     ttgaaacatg ggtcatgtcc acagaggtaa atctgcctaa ttatctaaac gaatttaatt      1680
     tatatatgag cagagctgtg agggaaaaat ccagaggtcg cgcaagcggc ggcttgatgg      1740
     tactggtgag gaaatctatt agtgatgttg aaatcattga aaattctaat ctgtatattg      1800
     ttataaaatt ttcattgggg aaagaagtag taattttggg taatgtttat ttgcctccca      1860
     gtgccgatac agattattgc attgagtctg tggatcatct tctctttgat atagaaacta      1920
     aataccctaa ttgctgttat aagataattg gtggggactt caattctaga atcggcaatt      1980
     taaactcctt tgacgaggaa ttatttgaag gccttgcctt atgtggtgaa agatgtgcct      2040
     cagatgggaa agttaacgct cgaggtaaat tgcttgttga aatgatggaa tcatatggaa      2100
     tgtttgtaac gaacggcagg agcccatctg attctcctgg aaactttaca tacatcagcc      2160
     gaagtggttg tagtataatt gatcttgtct ggacaaattt gcacactcta agttctatta      2220
     ttgatttctc tgtggtaaac tcatctctac attcaaatca tttattgtgt ttagtgtcaa      2280
     taaaccttaa taatacttta aaccagttta aacaatataa agtaaataaa tacaatgaaa      2340
     ttatcaaatg ggatagtagc aaattatatt tgtttcagaa tagtttatgc tgtaataatc      2400
     tttattttaa tagtcagaat gttgaagatt taaataataa tttattggta gcaatttata      2460
     aagctgcact ggacagtggt atgttaataa agaggcgctt taatgacagg cagattcagt      2520
     actctaacaa gccttggttc ggtggagaac ttaatgatct aaagaaaatt gtaaaaaata      2580
     aatataaatt gttcaaacgt gatccaagca actccgactt attggagggt tacctgttat      2640
     ctaggaaatc atataaaaat ttaatattta aaaagaagaa aagttatatt gaaaacatga      2700
     tatctaaatt ttctaatgtt aaaaatagct cggatttttg gaaaactgtc aaatatttta      2760
     gtgtgaagtc attaaaaaca aactgtatca gtattgccac mtggaatggt tttttaaagg      2820
     ctasctaccc ccatagaatt agtacatgta atgaatttta ttctgttagt gaccctttct      2880
     tagatcggaa tattgattta gctgaactgc aagtagcatt aaaattttgt aaaaatagta      2940
     aatctccagg tacagataaa gttccaaatg aaatctttaa gcatttacct ccagagtggg      3000
     aacattattt attaaatatg ttcaacacta tattagagtg cgaacaagtt cccaaattat      3060
     ggtcaaaaat taaaatgact atgttatata aaaaaggaga tattcaggag ccagaaaatt      3120
     atagagggat agctctaatt aatacggttt gtaaattatt tactggtatt gtgtctagaa      3180
     ggatatatga ctgggcagaa gcaaaccact tgctacctga agaacaagct ggatttagaa      3240
     gaggtaggag ttgtttggat cacttatata cactctattc aatgataaac atacatacaa      3300
     gacttaaaaa aagttatttt ctagcaatat ttatcgattt taaaaaagcg ttcgatagtg      3360
     tgaatcagga aaaattatgg ctaaagctgt ttaattttgg gttgagtggt aaattaataa      3420
     gaattataaa aaatatgtac gatagcgctt gtcttttctt ggaggagaac tgtgagagca      3480
     ctgattatat agaaattagt cagggtgttt tacagggcga ttgtttagtc cactcctctt      3540
     tatactctat atcagtgata ttgtagattt ctttgtaaaa catgaccata tcggattaaa      3600
     tatcaacaat aagaaagaat taatgatgct gctttttgct gacgatttac tgatatttgg      3660
     agaatcttgg gttgatgcaa tcaaaaaaat cagtacatta aaaaaatact gtgcagacaa      3720
     ttctatcaca cttaattcag aaaagactaa aataatacct ttttctaaat caaataaatt      3780
     aaaaaacttg aaaaaaatta tgtggaatga taagcctctc gatactgtta aaaaatatac      3840
     atatctaggt gtcccattta ctttcaattc taaatttaaa ttcgcggcaa accactttgt      3900
     tagcaagtcg acgccacagg tgggcaaagt attaagcatc ttagctaagg gtaaatctaa      3960
     ttcttgggag tctaaagtaa aattattgga tgccatagtt tcatctaccc ttctttatgg      4020
     atcagaagtt tgggcattta gatatttata cgtagtggaa agaacgcaag tcaaattttt      4080
     taagcaactg atgggttggg ccaaaaatac tccggattat ttagtgcgtt tggaatctgg      4140
     tagacctccc ttgagtgtgc aagtgtttaa gagaactctg aactattggt tgaggttatt      4200
     gaaaatgagt gaagataggc tgccaagaat ttgtttcctc aggttgagag aactacataa      4260
     ttcagggtat aataaagttg aatggaactg gttcacacag ctttctgagt ggctaagtaw      4320
     cattggggag tcggatatta ttcactctga tagtgtggag tatattacaa agaatatccc      4380
     cgatttaatt gagaagtgga ctaaccatgc gatctcattg gatgtggaga gagctattca      4440
     ttccggttat agtcacattt acagagaaat aagtttgtta ggaattccag aggaatatat      4500
     tcactataca tgtgctatag acaaactcag ggtgcttagt caattaagag tttctagtga      4560
     cagattttta agaataagaa atagaaatgg ataccattcc atcgagacaa gctctacctg      4620
     taccctctgt aatttgaact gtaaagagag tctggaacac atcctcttgg tctgtccaat      4680
     atattcatct cttagacagc atcatttatc tgaatatatg tttagtgtag ataattacac      4740
     aaatttgact gctatactct caatctgctc aatccgacag ttgaacagtg tgtaccaata      4800
     tactatagaa gtactcaagt taagatcttt tataataaac gaataatagt acaataataa      4860
     tgttaataat tgaaaatttt gattgagcct taattactat cgtttaaatc taattcaaaa      4920
     gataaattaa ttttgttaat cctcttcaat gtatacagtc cgaatatgaa ggtaatattt      4980
     taagtttggt cggaattaat ttatttattt ttattttatt tactttgtca tgtcaagtcg      5040
     tgcgtttagt taagtatttt attattattt ktcttaatta tttaattaat tattatttac      5100
     attttttttt ctgtcattag atatttttat ttatgtataa tttatttttg taactgagta      5160
     attaatttta tttgtttact aaacactacc agattgttaa tggaawttaa cacacaaaca      5220
     gaaccccctg taatatgtaa atacataaaa tacagtattt tatctatcta tctatctatc      5280
//
ID   RTEX-13_RPr repbase;    DNA;    INV; 3704 BP.
XX
AC   .
XX
DT   11-MAR-2013 (Rel. 20.10, Created)
DT   11-MAR-2013 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-13_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-3704
RA   Kojima N.F. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3495-3495 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3270
FT                 /product="RTEX-13_RPr_1p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase."
FT                 /translation="LRNNSKAKTLNILSYNISGLKGKMDNNLFLNFVKSXD
FT                 IFILLETFVMKDNINYYEKFFSEYKLRWLYAKKVFNKGRASGGALLGIKLN
FT                 IVSNLVFFSDVFNRTVISVRSSNLNLVIIPIYLNWASWDEELASLSYFLDN
FT                 LSNSKFMLIGDFNARMADRQTLPDELVIMNPMCSRVRKSKDLVCNGNGLKV
FT                 LDLCDGLGLLILNGRFPDDSEGEVTFIAGRGNSVIDYCGVSFDYIQFIKSF
FT                 TVKTEIFSDHLPIECSIAIDISKDETCESRLLPRLSWRDSKLNVYRETLTS
FT                 LITNIDVLPEDPQESVNLLTGLIKKSCHLQSSKTLMKIVRHKPWFDYQCLQ
FT                 SRKRAFKLLNLFRRTNSCIVKIAYCEANNSFNLLCKAKKEQFFLSINEQLK
FT                 SVRDSKQLWTLINHLRGSNFAYNNKISLSEWVAHFRSLLNPSSHPCPTLYA
FT                 EPCVRSPTLDAPFSYEELHMVVSNLKNNKSPGYDRVSYEFYKYAPTSFLHK
FT                 LLSLYNYIFESGTVPLTFSRSLIVPLHKSGDVNRVCNYRGISCIDSMANIF
FT                 SSLLLRRIEPFVKDNDLLSECQAGFRRGYSSLDNLFILISAVNITFAQPRK
FT                 KLYCFFVDFRAAFDSVHRSSLFLKLFNIGISSKLISALQALYSRSESAVRS
FT                 KDGVSEFFSVGTGVRQGCVLSPLLFSIFLDDLPPVLEGGVRLGTTKVKVLL
FT                 YADDVVLMADNPLLLQRNINILETYCKQWNLHINLSKSKILVFRRGGRLGS
FT                 RECWRYGGQKIEIVKTYNYLGITLSSRLSFYEHFKRKISVAKLGINTTWAN
FT                 VISVNDAPLRVKYQIYKTVSRAVACYGAQVWGHEQYELLEKFQRYFLKKLF
FT                 SLPACTPNYMLHIETSLDPVFLFTLKLNIGYCLNLLELPDYRLPKIVAMEV
FT                 IRRKLSWFSSWISLSQLHGVHFDSSIQDKSVWSKQLGSLISTLTRFYRKES
FT                 LERARNSDKYLLYRALIENKEDFGTHCGLNSVTCFNLSDLSLWFKLKGELL
FT                 NLNRVPWMERDPDKEYCQVCNLRQPETLYHFLGECPAFVDSRKRFFGSDLI
FT                 SGGFIVELFSTSDRLLLKFARHIWGIRNLRLSN"
XX
SQ   Sequence 3704 BP; 1030 A; 621 C; 711 G; 1341 T; 1 other;
     cttcgtaata attcaaaggc taaaacttta aatattttgt cgtacaacat ttctggttta        60
     aaaggtaaaa tggataacaa tttatttctt aattttgtaa agtcatamga tattttcatt       120
     ttattggaaa catttgtgat gaaggataat attaattatt atgaaaaatt tttctctgag       180
     tataaattaa ggtggttata tgcaaaaaaa gtatttaata aaggacgagc aagtggtggc       240
     gctcttttgg gcattaaatt gaatattgtg tctaatttgg tctttttttc agatgtattt       300
     aacagaacag taatttctgt tagaagttct aatttaaatc ttgtaataat tcctatttat       360
     ttgaactggg cttcctggga tgaagaactt gctagtttat cgtatttttt agacaattta       420
     tctaattcga aatttatgct aataggggat tttaatgcgc gaatggcaga taggcaaaca       480
     cttcctgatg agcttgttat tatgaatccc atgtgtagtc gtgttagaaa gtcaaaagat       540
     cttgtctgta atggaaatgg gcttaaagtt ttggacttgt gtgatggttt aggcttgttg       600
     atattaaatg gtcgattccc agatgattcg gagggagagg ttacgttcat agccggaagg       660
     ggtaactcag tgattgacta ttgtggtgta tcttttgact atatacaatt tattaagtca       720
     ttcactgtta aaacagaaat tttctctgat catctaccga ttgaatgtag tatcgctatt       780
     gatatatcta aagatgaaac ctgcgagtcg cgcttgttgc ctaggctatc ttggcgcgat       840
     agcaaactta atgtttatag agaaacgttg acaagtctta taacaaatat cgatgttctt       900
     cccgaagacc ctcaggaaag tgtgaattta ctaacgggtc ttattaagaa atcttgtcat       960
     ttacagagct ctaaaaccct aatgaaaata gtccggcaca agccttggtt tgattaccag      1020
     tgtctacagt ctagaaagag ggcatttaag ttgttaaatt tgtttcgcag gaccaattct      1080
     tgtatagtta aaatagctta ttgcgaagcc aacaacagtt tcaacctact ttgtaaagca      1140
     aagaaggagc agttttttct ttctataaat gagcagctga aatccgtaag ggattccaag      1200
     caattatgga ctttaattaa tcacctaaga ggttccaatt ttgcctataa taataaaatt      1260
     tcattaagtg agtgggttgc acatttccga tcgctgctta atccctcctc acatccttgc      1320
     ccgactctgt atgctgagcc ttgtgttagg tctcctacct tggacgcccc tttctcctat      1380
     gaagaactac atatggtagt gtctaatcta aaaaataata aatccccagg gtacgacaga      1440
     gttagttacg aattttataa gtatgcccct acatcttttc tacataaact gctgtcattg      1500
     tataactata tttttgagtc tggtacagtg cccctaacat tttcaagatc tctaatagtt      1560
     ccgctgcaca aatcaggaga tgtgaacagg gtgtgcaact ataggggcat ttcttgtatt      1620
     gattctatgg ccaatatttt ctccagtctt ctcttgcgtc gcattgaacc ctttgtcaaa      1680
     gacaatgact tattaagtga atgccaggct gggtttaggc gaggttattc ttccctggat      1740
     aatcttttta tcctaatcag tgctgttaac atcacgtttg ctcaacccag gaaaaagctt      1800
     tattgctttt ttgtagattt cagagcggca tttgacagtg ttcatcgctc ctccttgttt      1860
     ctcaaacttt ttaatattgg gatctcatcc aagctcatct cggctctcca agctctgtat      1920
     tcgagatcgg aatcggcggt cagaagcaag gacggggtgt ctgagttttt ctctgttggt      1980
     actggggtta gacagggttg tgtcctcagt cctcttttgt tttctatatt tctagatgat      2040
     ttgcccccag tgttagaggg tggagtccga ctaggaacca ctaaggtgaa ggtactattg      2100
     tatgctgacg atgtcgtcct aatggcggat aacccgcttc tcttacagag aaatataaat      2160
     attttggaaa catactgtaa gcaatggaac ctacacatta accttagtaa atctaagatc      2220
     ctagttttcc gtagaggtgg tcgattggga tctcgtgagt gctggagata tgggggtcag      2280
     aaaattgaga tcgtaaaaac ctacaattat ttgggaatca cactgtccag tcggctctcc      2340
     ttctatgaac attttaagag gaaaatctca gttgccaaac ttggtattaa taccacgtgg      2400
     gccaatgtga tttcggtgaa tgatgcgcca ttgcgggtca aatatcaaat ttataagact      2460
     gtatctcggg cagtagcatg ttatggtgct caagtgtggg ggcatgaaca atatgaattg      2520
     ttggagaaat ttcaaagata ctttcttaaa aagttgttct ctcttcctgc ctgcactccc      2580
     aactatatgc tgcacatcga aacttcccta gatccggttt ttctcttcac attgaaactt      2640
     aatataggtt attgtcttaa tttgcttgaa ttacctgact atcgcttgcc taagatagtg      2700
     gccatggaag taattaggcg taaattatca tggttttctt cgtggattag tttatcccaa      2760
     ttgcatggtg tacactttga ctcatcaatc caggataaat ccgtatggtc aaagcaacta      2820
     ggctcattaa tttctacttt aacacgtttt tataggaaag aatctcttga gcgtgctaga      2880
     aattctgata agtatctgtt gtatcgagct ttaatagaaa acaaggaaga tttcggtact      2940
     cattgcgggt tgaactcagt gacttgtttt aatttatctg atctgagttt gtggtttaaa      3000
     ctcaaagggg agctcttaaa tttaaataga gtcccgtgga tggagaggga tccggacaag      3060
     gagtattgcc aggtgtgtaa tcttcggcag cctgagactc tttatcactt tcttggggaa      3120
     tgtccagcat ttgttgactc gcgaaaaagg ttcttcggct ctgatctcat ttctggtgga      3180
     tttattgttg aattgttttc cacatcagat cggttattgc ttaaatttgc tcgtcatatt      3240
     tggggcataa gaaatttaag attgtcaaac taaatatcgt atgtactctt cacataagga      3300
     atgtacactt ctttaggcag tataattcag agaatttaat aatttttttt ttctttcttt      3360
     ctttcttttg tctcttttta tttttatgtg atcttattca tttccttttc tatatatttt      3420
     ttatatctgt attttctttg ttttttgtgt agaagtttcc taatttatat tttacttatt      3480
     acattattgt agatatcttt tctttttttt ttttttttac ttaaatttac atattacttt      3540
     gcttcaattg caaatagtaa ttttattttt gtatctactt atgatattgt acttaagaca      3600
     aactccggca gacggtctag ccatgcctat tgtacttatt tttatatatc agtttttgta      3660
     tttattttct ttcgtataaa taaagtacta tttaaactaa acta                       3704
//
ID   RTEX-1_BTa  repbase;    DNA;    INV; 4911 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4911
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 724-724 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           430..1338
FT                 /product="RTEX-1_BTa_1p"
FT                 /translation="MDKNELAKFFEQMRIDLRNDLKTEIEQQTSVLKNAIT
FT                 EIREQQDKQYQDLKSENENLKIALEKQKEIVSAMNRLNNVVIYGIPENTRE
FT                 DRDTLVNKIKIAFTENLKIVINNSDINWVRRLGKPHKNPRPILLSLTTNLK
FT                 KWQILESGPKLKGSDLYLSDDLSPEERQKRKYLNDVRKLEISKGAKCQWKS
FT                 GKLIINGELKSFDDLKKKYGDHVPAIPTEEHQDDNHVPENGESMRKRKREE
FT                 KKPPKTATKSKANHIRCNLDNFFRPRADSLPATPSSDSAFITEKQSNAHRP
FT                 NESEDNSSKQV"
FT   CDS           1292..4708
FT                 /product="RTEX-1_BTa_2p"
FT                 /translation="MHTAPTNQRITQASKSDNNETPGSLKILHWNCKGWSN
FT                 LTNLPNEDLQIILSHDVITLNETWLTQEVKNQTFHNFKIIFSNAIKEKSRG
FT                 RASGGIAIMIKNSLLSKMKQIHTLDISDMWIFVELQGQFSNLIIGAIYINS
FT                 SRDSYVSVELLEATMNDIMERSPDSHIIALGDFNAWVGNLNQLNYTDEELL
FT                 AGTKLTVNRETTDGKINKRGKLITATMESANMLLMNGRTISDSPAQYTFVG
FT                 NPGKSIIDLAWISVKSAEFINDFKVIPNFPVSDHFPCSLTLMSNLVSLADN
FT                 NGRKSPVSGKEVTIFKWNNDLSKNFNSRLASSLAETEEKENREIDDYNTLL
FT                 TAIKKSASETGLSHTVKRKISSNMHRNNWFDQECRIQKRKVKKAARQARRE
FT                 KFSNNSCKNLLFEKEMYSSLIKRKKKANANEIQNAVANTKNPSEFWKTIKK
FT                 LRCNKTQKSPVDTQTWEKYLENFYETIPEADTVFQDARHPVLDRKIETKEL
FT                 NSVLDSLKNNKTPGTDSIPYEFYKNLNGKGKSALLRILNNVMEKGEIPKKW
FT                 GEIKLSMLYKKGDPNDPDNYRGIALINSLAKILTYLVTKRVTKFIEINNLL
FT                 PENQAGFREKRGCNDNIFVLNSIIQFQKLKKQKAYLIFVDFKKAFDSVNHQ
FT                 KLWIKLYNLGVTANLIKIVQNLYKIANVMVDVNGMLSKPVKVSKGVLQGDP
FT                 FSALAFILFISDIETVLRKHVRGINVTISTDILLLAYADDLVILAESPIDA
FT                 QRKLNYLEKYCLENDLIVNVSKTKILPCHCGRKPGKLPRFKYGGEEIEVVK
FT                 HYVYLGVKFTSSGLFAMQADDAISRTAIAGSSVIQILQKAKNNSFKSVLKL
FT                 WDSVTLATLLYAAEIWALRYCDMLESAQSRFFKSVFRWQRCTPHYVIRQET
FT                 GKDNIETKVLKSTLNWYHRVQNMHESRYPKICLARLKELDESRYNIIKYNW
FT                 FSQLKAMLHKIDQEYLFLRETTEPAAIRKMVNEVQRKISELTMEKDKEKLN
FT                 ETKFVPHYNLINTENIDANHNYLYRKVSFAKKRLFSQLRARNVNSLNITIN
FT                 QMNHRINPNEICTICNTQQPEDAHHLFFVCPIYHNTRKYYLHSYLNKDINL
FT                 ILSKDSNEQQLTDIYNYFATILSIRSFIINE"
XX
SQ   Sequence 4911 BP; 1854 A; 983 C; 867 G; 1206 T; 1 other;
     gaggttaggt tgtcacgtcg accgaatcgg aagtgtgctc ccgtgctccc ggaattttaa        60
     agattttaaa gtatttttac gaaagtttca agtgaaattt attacaggga agtgctcgtg       120
     atatcgaatt tcggaataat gatactaata cgcgccggat ctcggtgaaa cgaaagaaaa       180
     taacaaataa agtgctccta tactagtgtc ctgatttcta gaatgttcgg tgataatcgt       240
     gataacaatc agctgtgatc agataacctt gatcttgacg gcccgtgtcg cgtcgcgctt       300
     cggcttcttc cgagacgact cggatcctga tatcgaatct cgccgcaaga attctagccg       360
     acctatcgac ctatcgacct atcgatctag tcaccgagcg tgtttgtaaa cattatcaat       420
     caatccgaaa tggataagaa cgaattagca aaatttttcg agcaaatgcg aattgacctc       480
     agaaacgatc ttaaaactga aatagaacaa caaactagtg tgttaaaaaa tgcgatcact       540
     gagattcgcg aacagcaaga caaacaatat caagacctga aatctgagaa tgaaaacctg       600
     aaaattgccc tggaaaaaca aaaggaaatc gtgagtgcaa tgaaccgctt aaataatgta       660
     gtcatatatg gtatcccaga aaataccaga gaagacagag ataccttggt gaacaaaatc       720
     aagattgcat ttacagaaaa tctaaaaatc gtaataaaca actcagacat taactgggtg       780
     cgccgcctgg gcaagccgca caaaaatccc cggcctatcc tactttcgct aacaactaac       840
     ctaaagaaat ggcaaatttt ggaaagtggc cctaagttga aaggctctga cttatacttg       900
     tcagatgacc tatctcccga agaaagacag aagcgcaaat acctaaatga tgtgcgaaaa       960
     ttagaaataa gtaaaggcgc taaatgtcaa tggaaaagcg gcaagctaat tatcaatggt      1020
     gaacttaaat cctttgatga cctaaaaaag aaatacggtg atcacgtccc ggccataccc      1080
     acggaggaac accaagatga caaccatgta ccagagaacg gagaatccat gaggaagcga      1140
     aaacgagaag aaaaaaagcc ccctaaaaca gctaccaagt caaaagccaa ccacatccga      1200
     tgcaacctgg acaacttttt tcgccccaga gcagactccc tacctgcaac accctcctcc      1260
     gacagtgcct tcatcaccga gaagcagagt aatgcacacc gccccaacga atcagaggat      1320
     aactcaagca agcaagtctg acaacaacga aacccctggc agcctgaaaa tacttcattg      1380
     gaattgcaaa ggatggtcaa acctgaccaa cctccctaat gaagatctac aaataatcct      1440
     aagtcacgat gtaatcactc taaatgaaac atggctcaca caagaggtaa aaaatcaaac      1500
     ctttcataat tttaaaataa tattcagcaa tgcaattaaa gaaaagtcaa gaggaagagc      1560
     atcaggcggc attgcaatta tgataaaaaa ttctctttta tcaaaaatga aacagatcca      1620
     taccctagac atatcagaca tgtggatatt tgttgagtta caaggtcaat ttagtaatct      1680
     tataattggt gcaatttata taaattcatc ccgggacagt tatgtgagtg tcgaactatt      1740
     agaagcaact atgaacgata taatggaacg atccccagac tctcacatca ttgcccttgg      1800
     agatttcaat gcctgggtag gtaacctaaa tcagttaaat tatactgatg aggaacttct      1860
     tgctggaact aaattaactg tkaatagaga gacaacagat ggaaaaataa ataagcgagg      1920
     aaagctaatt acagcaacta tggaatcagc aaacatgctg ttgatgaatg gtagaacgat      1980
     ctcagattcc cctgctcagt atacatttgt aggtaaccca ggaaaaagta ttattgacct      2040
     ggcgtggatt agtgtaaaat ctgcagaatt tataaatgac tttaaagtga ttcctaactt      2100
     ccctgtatca gatcatttcc catgcagcct aacattgatg tcaaacctag tttcacttgc      2160
     agataataat ggtagaaaaa gccccgtatc gggaaaagaa gtcacaatat ttaaatggaa      2220
     taatgacctt tctaaaaact ttaactcacg actcgccagc tcactggcag agacagagga      2280
     aaaagaaaac cgtgaaatag atgattacaa tactctgctt acagccataa aaaaatctgc      2340
     cagtgaaaca ggtcttagcc acactgtaaa aagaaaaata agttccaata tgcacagaaa      2400
     taactggttt gaccaagaat gcagaattca aaaacgtaaa gttaaaaaag cagctagaca      2460
     ggctaggaga gaaaaattct caaataacag ctgcaaaaat ctcctttttg aaaaagaaat      2520
     gtactcgagc ttaataaaaa ggaaaaagaa ggccaacgca aatgaaatcc aaaacgcagt      2580
     ggctaatacc aagaacccct ccgagttctg gaaaaccatt aaaaaactaa ggtgcaacaa      2640
     aacacaaaag agtcccgtag atacccaaac ctgggaaaaa tacttggaaa atttttatga      2700
     aaccatccct gaagcagata ctgtctttca agatgctaga cacccagttc tggataggaa      2760
     aattgaaact aaagaattaa actctgtatt ggatagctta aaaaataaca aaaccccggg      2820
     aacagacagc attccttatg aattttataa aaacttgaat ggaaaaggga aatccgctct      2880
     cctgcgaata ctaaacaatg taatggaaaa aggagaaatc ccaaaaaagt ggggtgaaat      2940
     taaattatcc atgttataca aaaaaggtga cccaaacgac cccgacaatt atagaggtat      3000
     tgcacttatc aactcattag ccaaaattct cacctattta gtcactaaaa gagtcactaa      3060
     attcattgaa attaataatt tgctacctga aaaccaggct ggctttagag agaagagagg      3120
     ctgcaatgac aacatttttg tgttaaattc catcatccag tttcagaaac tgaaaaaaca      3180
     aaaagcctac ttgatttttg tagatttcaa aaaagcattt gattcggtta accaccagaa      3240
     attgtggata aaactttata atttaggagt aactgcgaac ttaataaaaa tagtgcaaaa      3300
     tctgtacaaa atcgccaatg ttatggtaga cgtaaatggc atgctaagca aacctgttaa      3360
     agtcagcaag ggagttttac aaggtgaccc ctttagcgcc ttagctttca ttctttttat      3420
     tagcgacatc gaaacagtgc ttaggaagca tgtacgtggt ataaatgtaa cgataagtac      3480
     tgatatatta ctccttgcct atgcagacga cctagttatt ttggccgagt ccccaatcga      3540
     cgcccaaaga aaattaaatt acctagaaaa atactgttta gaaaatgacc tcatagtaaa      3600
     cgtctctaaa acaaaaatac taccctgtca ctgtggcaga aaaccaggta aactcccacg      3660
     cttcaaatat ggaggcgaag aaattgaagt tgtaaaacac tacgtgtact taggtgtcaa      3720
     atttacaagc agcggactat ttgcaatgca agctgatgac gcaatatccc gcacagctat      3780
     agccggaagt tccgtgatac aaatactaca aaaagcgaaa aataactctt tcaaatccgt      3840
     attaaaatta tgggactcgg tcacactagc aactctacta tatgcggcag aaatttgggc      3900
     tctcaggtat tgtgatatgc ttgagtctgc tcaaagcaga tttttcaaat ccgtttttcg      3960
     atggcaaaga tgcacacccc actatgtcat aagacaagaa accggcaaag ataatataga      4020
     aacaaaggta ttgaaatcta cgctgaattg gtaccacaga gtacaaaata tgcacgagtc      4080
     caggtaccct aaaatatgct tggcccgact caaagaacta gatgaaagta ggtacaatat      4140
     aattaaatac aactggttct ctcaattaaa agccatgtta cataaaattg accaagaata      4200
     tctatttctt agagaaacca cagagccagc tgcgatcagg aaaatggtaa atgaagttca      4260
     gagaaaaata tcagaactta ccatggaaaa agacaaagaa aagttaaatg aaacaaagtt      4320
     tgtcccccat tacaacctaa ttaacactga gaatattgat gccaaccata attatttata      4380
     tcgtaaagtg agttttgcga aaaaaagact attcagccaa ctacgagcga gaaatgttaa      4440
     ctcccttaac atcactatca atcagatgaa ccatagaatt aaccctaacg aaatttgcac      4500
     aatttgtaat actcaacaac ctgaagatgc gcaccactta ttctttgtct gccccattta      4560
     ccataacact cgaaaatatt acttacacag ctaccttaac aaagacataa acctaattct      4620
     tagtaaagac tcaaacgagc aacagcttac agatatttat aattattttg cgacaattct      4680
     gagtataaga tcgttcataa taaatgaata actgaatcaa aaaacaaagt ttgcctatca      4740
     tgaacgctgc tatttcatgt acataattgt aagcccagca tatcctagag ataagtgtag      4800
     cataatgaag taatctcatg tttgtaaatg atctcccaac ctaaccccct ttgttaaatc      4860
     ctccccagga taaaaaataa agtattctat ctatctatct atctatctat c               4911
//
ID   RTEX-1_CoFl repbase;    DNA;    INV; 5058 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5058
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2384-2384 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           609..1334
FT                 /product="RTEX-1_CoFl_1p"
FT                 /note="putative phosphodiesterase."
FT                 /translation="MAGKPPAASMNTRNNTNAKLKEQTLLNFTKENQENKE
FT                 LNDKMSRLERKLDSMISSLERREEDWKEEKQMWIKERQQWTEEKKALEERI
FT                 SKLEWETEKAEREKRRPNIVIKGANIEGENLEKKVEEYIEQKIKVKVKIEK
FT                 AKXISVNAGQNVRKLVVVRLASKEMKEEVMRNKKHLERGVYIESDLTERER
FT                 EIQRFILNKSKEQRNKGKNTKVGYMKILIDGKWLRFDERKGDFTEERRRSQ
FT                 E"
FT   CDS           1338..4559
FT                 /product="RTEX-1_CoFl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="GEQEDVEEEGVRRRNVSVCAWNIAGVLNKDSEVWKYL
FT                 SEFDVIMLVETWLEKDKWANVESELPKSYEWKCIAATREHKKGRAKGGVIL
FT                 GISKKLESRNHEVWSDNIVMQEIKHGNQNWKIIGVYSQNVAETMGIIKEKV
FT                 KTKESGCVLILGDWNARTGREGGWINESDSESDSDDKDVRLRKSKDEKINE
FT                 EGRRLIKEITEEGWCIVNGQKGEEGEFTYVGSRGESVIDYAIGCQEALDQI
FT                 KEMKIGQRTESDHMPLEVYLEKEVEVGIVEKEERTKARRDWTQELIDQYGE
FT                 RCKDWERKGKEVEERWSELKEKIXXAVPKVEKQCRVWKMGDKKWHDKEWKE
FT                 KKKDLRRIMKRWRKKKIERSYYIDKKREYRNWCEAKRKRFERLEEEEIKNA
FT                 TSEGEVWKYINKYRKKRRREISKKFTVEEWRRYFMEKLDGKNEEGIVREET
FT                 RKDEARTNAVDQEEMSKEEFERQIARLKVGKAPGEDKLENEVWKYMPGEVD
FT                 AALWELLKKVWKKGELPDQWRQGTICLIHKKGDKDMLENYRGVTLTCTAYK
FT                 IYASMLNEMLKKEIEGKLSESQFGFREKRGVIEAIYTLKHIVEEKLSKERG
FT                 KLFTCFIDLKEAFDRVDRKVLKERLIEMEVSEKLRNRIMDIYKETRNVVKV
FT                 GEEESKEFWTEKGVRQGCPLSPTLFNVYLADLEQELKKGQVGGCRVGNEKV
FT                 WSLSYADDIVLIADREEELKEMLKRFKKYINKKKMILSEEKTKILVFEKRK
FT                 RNDRRWKWGSKELEEVNEIRYLGYILQKNGRNDRHIEERKRKAVIAMKNAW
FT                 SIGERIFKNSYKRRRKLFTALVESIALFGAEVWGWEEEERLESVQRRYMKW
FT                 ILGLDSNTPNYIVEEECRLERMSIKALRRALKFEEKIRESDIKLVKECIRE
FT                 KDKDKERERIGKDSKKRAELLREEKVKETRFMKGVEFREEVREKILMNKER
FT                 KEKEKRMEKIENSRYNRTYKGIRTEDEPEYLKKDMPLKDRKLVARFRCGNE
FT                 CRSREYWKGEEDKKCRLCKEEEEDLRHILKICGDTRNEEEMEKILSHDAKE
FT                 IEVLRKVIRKRKESEKI"
XX
SQ   Sequence 5058 BP; 2253 A; 371 C; 1405 G; 1018 T; 11 other;
     gagttccgtt gtgcatgcga gagagtgcgg acgtgtcgag agagcgctcc gtaggaaaga        60
     gtaattaaaa agtaattaaa gtaaaaataa aagaaataaa aagtacgagg aagtgtaaaa       120
     agtgaagaag cagcagagaa aaaagtgtaa agtgaataat tatgaaagtt tgaaaggatg       180
     aagtgagatt agtgtggtag tgtcagggta aagagaacgg aacacgtgta aggcaagtaa       240
     ggagtgggta gtaagaatag gggataataa agaaaggtat tagtgagcgg aaaaacgaga       300
     gacaagagga caggaaaaca gtgttaaagt ggtgatagta aaagaaaaag tgcagtgaag       360
     ttcgaaagaa agtgaggtta gaaaagatat tacaggaaga aagaagcggc aattggagaa       420
     agaggtcgat aaaaggggta atctgagagg tagataagga acgwccctga aaaaaaaaaa       480
     aaaaaaagca aattgaggtc ggtaaggaag gtcactactt tgtcgagtaa ggctggtaaa       540
     tagagtttct gaccgataga agtggatgtc ggtaaagtag aaaactgcat tatcggcaaa       600
     atttaaaaat ggccggaaag ccgcctgcag caagtatgaa tacaagaaat aatacaaatg       660
     caaaattaaa ggaacagact ctattgaatt ttacaaaaga aaatcaggag aataaagaat       720
     taaacgataa gatgagcagg ttggaaagga agttggacag catgattagt agtctagaaa       780
     gaagagaaga agattggaaa gaggaaaaac agatgtggat aaaagaaagg caacagtgga       840
     cagaagaaaa gaaggcgtta gaagaaagaa taagcaagtt ggaatgggaa acagaaaaag       900
     ctgagagaga gaaaaggaga ccgaacattg ttataaaagg agcaaatatt gaaggagaga       960
     atctggagaa gaaggtcgaa gaatatattg aacaaaagat aaaagtaaaa gtcaagatag      1020
     agaaggctaa agwgataagt gtaaacgctg ggcaaaatgt gaggaagttg gtggtagtaa      1080
     ggctggcaag taaagaaatg aaagaagaag taatgagaaa taaaaaacat ctggagagag      1140
     gagtttacat agaaagcgat ctaacagaga gagaaagaga gatccaaaga tttattttaa      1200
     acaagtcaaa agagcagagg aacaaaggaa aaaatacaaa agttggatat atgaagattt      1260
     tgatcgatgg taaatggctt agatttgatg aaaggaaagg agattttaca gaggaaagaa      1320
     gaaggagcca agaatgagga gaacaagaag atgtagagga ggagggagtg agaagaagaa      1380
     atgttagtgt ttgtgcgtgg aacattgcgg gagtgctaaa taaggacagt gaagtgtgga      1440
     agtatttaag tgaatttgat gtgataatgt tagtagagac atggttggaa aaggacaagt      1500
     gggctaatgt agaaagtgag ttgccaaaaa gctatgagtg gaagtgtata gcagcgacta      1560
     gagagcataa aaaaggtaga gcgaaaggag gagtaatatt aggaataagc aaaaaattgg      1620
     agagtagaaa tcatgaagta tggagcgata atatagtaat gcaggagatt aaacacggaa      1680
     atcagaactg gaagatcata ggagtatata gtcaaaatgt agcagagacg atgggaatta      1740
     taaaggaaaa agtaaaaacg aaggaaagtg gatgcgtact tatactagga gactggaatg      1800
     caagaactgg gagagaagga ggttggatta atgaaagtga tagtgagagt gatagtgacg      1860
     acaaggacgt aaggttaaga aagtcgaaag acgaaaagat caatgaggaa ggtagaagac      1920
     taataaaaga aataacagaa gaaggatggt gtatagtaaa tgggcaaaaa ggagaagaag      1980
     gagaattcac atacgttggt agcagaggag agtcggtaat agattacgca ataggatgtc      2040
     aagaagcgtt agatcagatt aaggaaatga agataggaca aagaacggaa tcagatcata      2100
     tgccgctaga agtataccta gaaaaggaag tagaggtagg aattgtagag aaagaagaga      2160
     gaacaaaggc aaggagggat tggactcaag aattgattga tcagtatgga gaaaggtgta      2220
     aagactggga gcgaaaggga aaagaggttg aagaaagatg gagtgaattg aaagaaaaaa      2280
     tagawagkgc agtacctaag gtggaaaaac agtgtagagt gtggaagatg ggggataaaa      2340
     aatggcacga taaagaatgg aaggagaaga agaaggattt aagaagaata atgaaaaggt      2400
     ggaggaaaaa gaaaatagaa agaagttatt acatagataa aaaaagagag tataggaact      2460
     ggtgtgaggc aaaaaggaaa aggtttgaaa gattagaaga agaagagata aaaaatgcaa      2520
     catcggaagg cgaagtgtgg aaatatataa acaagtacag gaaaaaacga aggagagaaa      2580
     tatctaaaaa gttcacagta gaagagtgga gaaggtactt tatggaaaag ttagatggga      2640
     agaatgaaga aggaattgtg agggaagaga caagaaagga tgaggcaaga acaaatgcag      2700
     tggatcagga agaaatgagc aaggaagagt tcgagaggca gatagccaga ttaaaagtag      2760
     gaaaagcacc aggagaagac aagttggaaa atgaagtgtg gaagtacatg ccgggagaag      2820
     tggatgcagc tctgtgggaa ttgctgaaaa aagtatggaa aaaaggagaa ttaccggatc      2880
     agtggaggca aggtacgatt tgtttgattc acaaaaaagg tgataaagat atgttagaaa      2940
     attatagagg agtgacattg acatgtacag catataagat ttatgcgagt atgttaaatg      3000
     agatgttaaa aaaggaaatc gaaggtaaat tatcagaaag ccagtttggt tttagagaaa      3060
     agagaggagt aatagaagct atatatacat tgaaacacat tgttgaggaa aaattaagca      3120
     aagaaagagg aaaattattt acatgtttta ttgatttaaa ggaagcattt gatcgagtgg      3180
     ataggaaagt tttaaaggaa agattaatag aaatggaagt gagtgaaaag ctaagaaata      3240
     ggattatgga tatttataaa gaaacgagaa atgtagttaa agttggagaa gaggaatcca      3300
     aggaattttg gacagagaaa ggtgtgaggc aaggctgccc actgagcccg acgctgttta      3360
     acgtgtactt agcggatctg gagcaggaat taaagaaagg gcaggtggga ggatgcagag      3420
     ttggtaatga aaaagtatgg agtctatctt acgcggatga tatagtatta atagcagata      3480
     gagaagaaga attgaaagag atgttaaaaa gattcaaaaa gtacataaat aaaaagaaga      3540
     tgattttaag tgaggaaaaa acgaaaattt tagtgttcga aaaaagaaag aggaatgata      3600
     gaaggtggaa gtggggaagt aaggaattag aagaagtaaa tgaaataaga tatttaggat      3660
     atatactaca gaaaaatggg agaaacgata ggcatataga agaaaggaaa aggaaagcag      3720
     tgatagctat gaaaaatgcg tggagcatag gagaaagaat atttaagaat agctataaaa      3780
     gaagaagaaa attatttaca gccctagtag aaagtatagc gctatttggt gcggaagtgt      3840
     ggggctggga agaagaagaa agactagaaa gtgtacagag aagatatatg aaatggatat      3900
     taggattaga cagcaataca ccaaattata tagtggagga ggagtgtaga ttagaaagga      3960
     tgagtataaa agcgttaagg agagcgttaa agtttgaaga gaaaattagg gagtcagaca      4020
     taaaattagt aaaagaatgc ataagagaaa aggacaagga caaggaaaga gagagaatag      4080
     gaaaggactc aaaaaagaga gctgaattac tacgggaaga gaaagtaaaa gaaacaagat      4140
     ttatgaaagg agtagaattt agggaggaag taagagaaaa aatattaatg aacaaggaaa      4200
     gaaaagaaaa agagaagaga atggaaaaga tagagaattc acggtacaac agaacatata      4260
     aaggtataag aacagaagat gaaccagaat acttgaaaaa ggatatgcca ttaaaggata      4320
     gaaagttagt agcaaggttt agatgcggaa atgaatgcag aagtagagaa tactggaaag      4380
     gagaggagga taagaagtgt agattatgca aggaggagga agaagatctt aggcacatac      4440
     taaagatttg cggagatacg agaaatgaag aagaaatgga aaaaatacta agccatgatg      4500
     caaaagagat agaagtgcta agaaaagtaa tcagaaaaag gaaggagtca gaaaagatct      4560
     aaaagataaa agaaagtatg cagaaagtta aggtagtaaa gagagaagaa ggattagtag      4620
     gacaagaaag aagagagaaa aagaaatgca aggaagaatg aagaatacaa gaaaatatat      4680
     ggacaattta aagaaaaawg ttgttaattt ttgaaatttt tgatagttaa gtagtattag      4740
     aaaatttgtt tackgagtta aatatgggaa attttgataa ttttgataat ttaagttgga      4800
     aatttttgaa tttttgatag gcatgtgttw aattttgaat tktgagaatt gagttttgta      4860
     tawttggaat tgtagtaata ttaagtttgt tttatttcaa tattatwtta acaaaagaca      4920
     aggtagaata ttaagaatag ttgaaktaaa aatgaatata ttatatagcg tagattaagt      4980
     atgtattaaa tgtacaaaat gtcacggaac ccctccaaac ccgtaaggga cggagtatga      5040
     aataaataaa taaataaa                                                    5058
//
ID   RTEX-1_DRh  repbase;    DNA;    INV; 4717 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-4717
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1692-1692 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. The consensus is ~96% identical to
CC   that of RTEX-2_DT.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 4717 BP; 1659 A; 1018 C; 936 G; 1104 T; 0 other;
     aagaagatac gcagtacgga cgtgcaaaaa gtggctcctg aattcttttc aaaatacaac        60
     actcctggtc cgccgaagcc ctgctggacg tacctaaaca ctgtcacttg gaaggggcta       120
     catcggcacc gtgaaatctc tggccaaaca cctccggatc tggctaaaat cacttggtat       180
     cgcccctccc aaaccgacct ggaaacgcgg cttttcactc aaacggacca tttttgttgg       240
     tggaaaccga cggtaaagga ggaaaaccaa aataaaaaac cactcagaag accggcaatg       300
     attaggcgca aacaaaacta gtgacggaac acaacagctg agaagcaatc acagtgagtc       360
     ggatccaaag ctcttgctta tcgaacgccc accagaataa tagcttagtc taatctacgg       420
     tcccagcttt agccaatagg tggcgtttag aaaagtttag aaaaaatata aaagcatcgt       480
     tttaggcata ctgttaaatc tctgcacaaa actaaataaa aatgttagga ctcgccagga       540
     cccctactaa gcctcagggt accggtcagg ccgggacatt caatgcgaca cctgctagcg       600
     tctcaaaacg gagtcgatca gacactcccc cgcaaaataa tcgcacacca acaaacacag       660
     gcaacctggt agatcttaaa gatctgaaat ccatgctgga gggtatgttc gactcaaagc       720
     tcaaagaact agctacaaaa tcggacgtta attcgattgc cacaaaaatg gataccattc       780
     agcaaaatgt agaatgtctc tcaacaaagg tcgactcgct aacagaggaa aacaaaatac       840
     tgcaggcaga gattaacaaa atcaaaagcg acaacgaaaa caaacaagca agacttctac       900
     aactagaaga cgcaaataaa cgaaaaaaca taatcatccg aggtctaaaa tccgaaaaaa       960
     atccatttaa tgctgtatct gacctaataa agagggaatt gttgataaag gaccgtatgg      1020
     agatagactc ggtaaagaag ctacacgacg ccgacggaaa aatggctgtt ctggttgaac      1080
     taaacacagt aagcgcagta cagaccatcc ttaagcacac caaaaacctg aaaggaacgc      1140
     gagtctcaat cgaacaggat ctgaacatcg aaaggagact ttaaaaaacg cgtgatgcta      1200
     ggcctccgcc gggacattct ggaaagccac aaaaacttta aggtcactgt tagaaacgat      1260
     cgcatggtta ttgaaggtaa atggttctac tggaataaag acggcaagct catgtgtgga      1320
     gtagagttag cacaaaatgt cctggagaac atatatggta cctcatttaa aatagcccta      1380
     gactacgaag ttatattgag caaactaaat tcaaaaaact aaatgtccct aatgtagtac      1440
     cgtcccttaa tgttaaaatt gtatcgtaca atatagctgg cttagcaaat aagacattat      1500
     ttaaacaatt ctttaatttt gttacacaat tcgacatttt tctactattt gaaacttttc      1560
     tgaccaacga cgaaacgagt tttgcaaatt actttcctga tcatttgctg cattggatac      1620
     cagcagtgag agtagcagcc cgtggacggg ccagcggagg aagtgtttac ggaatccgaa      1680
     agcagctggt gaacgaagga cacattacct ttacgagcaa ggaaaacgca gaagtcatcg      1740
     aaataaacac gaaagacgaa aaactacata tactcccagt atacattaac tgcaataact      1800
     ggcaagcaga ttttgaaaag gtgtacgatt tcggactgac agcaggttgc aataacctaa      1860
     tgattattgg ggatataaat gctcgcatcg gaaaagcaca agccacaaca gaacccacaa      1920
     atatagacct caggaccagt agcacgattc gtaaatctaa ggacgaaatc tcagacaaca      1980
     aaggcgcaaa aattgttgag atgtgcgaat cactaggact gacggtaatg aacggcagga      2040
     caatcggtga ccaagaagga gaatatacct ttataagggg cgcagcaagg tcgactattg      2100
     actactgtct catacaagga aagtggcacg atgtggtgaa agatttggtg gtaggtgctc      2160
     aacccctttc tgaccatatg cccatcgaag tccttttaaa agtcattcta catgaacaag      2220
     tcgatagtac ccagccaaaa ctcaaccgaa ggttagagtg gaaggacaac caccgcctaa      2280
     gttacgcaga cgcattagtt caggagtcca acaaatagga gatctgagtg ggtctacact      2340
     gctagccaaa ctgctcaact taatcgtaga tgcctcaacc catgcagcag tcactaaact      2400
     ttagcagaaa gcaaccgtgg ttcgacgtac aatgcgaaca gttctggata aatatggaac      2460
     gccaactaca agaagttcgc gacagcaaac agttctggga aatcgttaat aaattaaacg      2520
     ggaacaaaca gaaaaaaccc ataaaagtaa gttcaacaga tttggcaaac tattttagta      2580
     gcctactctc ccaaattcaa aatgaaacag aaatcagcta tgctaagcct ctgctttcct      2640
     cagatcatat ggactcccct ttcagccttg cagaaataga aagcgctgtc ctaacactaa      2700
     aactaaacaa agctcctggt gaagacagaa taactgcaga atttttcaaa aacgcgccgc      2760
     tttgttttat acagcgactt accgatgcct acaatgaatt ttacagccat ggaattttcc      2820
     cagattgctt caaaaaaagt ctgatcagcc caatttttaa aaaaggtgtg gagaccgatc      2880
     ccagcaacta ccgaggcata tctgctcaaa acacagtcgc taagattttt gcaggagcac      2940
     tgttaaaacg tatgacgaca tgggtaaacc gagaaaacat tcttagtgaa tttcagacag      3000
     gctttcgaaa gggtttctct acagttgaca gtgttttcgt gctgacatca atcgcccaaa      3060
     cctttctgca acaaaaaaag aagctgtaca ttttctttgt agattttaaa gccgcctttg      3120
     atacagtgaa ccgaaatagc ctaatgtata aacttagcca actcggactc tcaacaaaag      3180
     ccatactagc actgtccagt atctatgagg ataacaaagc aagtgtgtgg gacggatcag      3240
     agctttcgaa atggttcgat accaacagtg gagttaaaca aggctgcatt ctcagccctc      3300
     tcctcttctc tctcttcgtg gacgatgttg ttgatttttt accaggtgga gtgaccgtga      3360
     atggaaccca tgttaagacc cttatgtatg ccgatgacat gtgcctactg gctgacagcc      3420
     ctgaaacgtt aagggacatg attgctagca tatccgagta ctgtaaagta tggaacctca      3480
     ccataaatac aagcaaatca aagattatgg tagttaaggg tacaggtggc cgtcacgcta      3540
     ggaacgaaga atggcaactg aacggaatcc agctggaacg tgtaaaatca ttcaaatacc      3600
     tcggtgtaac gcttaccaca aatatgagtt tttataccca cataaaagat aagctcaaag      3660
     atgcaaaaat agctatgaac gccacctgga aaaacttttt aggcagaaaa aacgttaaaa      3720
     tgagtgccaa gtacagcctt ttccaggcga cagtgaaaac aattatgtgc tactcggcag      3780
     aggtgtgggg aaatcaaaga tatgaagatg cggaacgagt actaactttt tttgtaaaaa      3840
     agatatttcg actgccacaa aatactcccg actatgcaat ttttattgaa acaggactgc      3900
     ctagtatatt ctcctacaca cttcagcagc actttaatta catcgataag gttatgcata      3960
     tgccaaatag tagactaccg aaaataattg caaaatctct ctgtgaaaga aacgaacttc      4020
     cattctctag atggacggat attgcaaccg aatgcagttg cccccttgat ctcgaggatg      4080
     caagttcgtg gagcaggact catgccgaaa tcattaccag ataccacaac atagaaagag      4140
     aaaagtttat aactaaggcc aaaaacagcg cgtcgaggag tgtgtataaa aatcttgagc      4200
     ataatttatc tgaaaaaaac tacttccacg atcaacataa aggagaactc ataaaacata      4260
     tcttccaagc tggaaccgag actttacctc taaatggcag gccatacagc agcaacccat      4320
     cactggaatg cagcctctgc aacatgcgag aaatcgagga tgttcaacac ttcattgcag      4380
     tctgccctat tctgagagag attcgtttta catgttttac gaaaaccacc ctttgcgaat      4440
     cggatctcca cagtcttcta aatggggaaa actgggagaa tctggcattc ttcattacaa      4500
     aagccagtta ttacagaaaa aaaattattt tagaacaatt ttagaatcta acttaactaa      4560
     attaaccgac tgacggcata aaagccattg tcgttgtaac caatttttgt ttgtttattt      4620
     gttttgatgt aaatttaaat atgtacagcc agctataaat aagcaacaca agaaaaacaa      4680
     aacacaaaca ataaacaacc tactactact actacta                               4717
//
ID   RTEX-1_DT   repbase;    DNA;    INV; 4923 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   30-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4923
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1720-1720 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. Probably active. 5'-end uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1262..4624
FT                 /product="RTEX-1_DT_2p"
FT                 /translation="MPKVQVRKLNRNKNKCIKCSPMLECSNVVGVNAIKES
FT                 DTIERLEIKILSYNVAGIKNKLIYNDFFQYIASFQIFILSETFLESKLDAV
FT                 EVKFKDFVLRWVPAIRTSARGRASGGMIYGIKRELHEQNIISFINVDEAII
FT                 IQLRTVENENLHLLPVYINCNHWERDSGMLHEVLNHVRLSESALIIGDCNA
FT                 RLGEAQLLGFDQQLGTSALDEARNAKDKVTDANGRHLMDLIELFGFTVVNG
FT                 RSAGDPLGDYTFMRGEARSTIDLCMARGTWIKTIKDLEVNSQIFSDHLPLV
FT                 VTVTLSTTSNAVTAPLGLLPSLIWRNREKENYRTKLDRNLATSCVADLRTP
FT                 DEIEGFLTECIIKAVNTRGRRKPRDFKQEWYTEQCEAARMLSFNMLRQLKS
FT                 TNSASAAVMYHEANAAYKLTCQKARTQFYINLARSLDSITDSRTYWTTIKK
FT                 LNGSSFVKSREVNADDLGNHFRDLLAPPDWTQSLHFAMPSVQNPILDGYVT
FT                 GQEVENIIAMLKERKAPGPDRIPAEFIKYATPQFTASLVTAFNKFLESEAV
FT                 PKSFQKAIIFPIFKKGDPKVTSNYRGISFQNALAKVFAALLLERLKNWLRV
FT                 CDILTEFQAGFRKGYSTVDNIFSLTSIARSYIDGGKKLYAFFVDFRAAFDS
FT                 IDRRTLTYKLSNIGISTMFLNVLQSLYTDNMAAVWDGEQLSEWFATEAGVK
FT                 QGCLLSPLLFSLFLNDITDSLPCGIQIGGCAIKALLYADDIVILAESPDEL
FT                 QEMINALHKYCLLWGLSVNTEKSKVLIFKRHWRRLAQNEKWNLGSIQLDIV
FT                 KTYKYLGVWIYHNGRFNNHLLEKLRDAKLAINCTWKSLLGKKDVPMSSKYK
FT                 LFSAAMRSILCYGAQVWGILPYEEVESLLRFFLKKIFRLPRFTPNRMLYLE
FT                 TGLPPLHIFTAEMHFRYIQRVVSMPECRLPRILANYLVQERKQWVIEWVTL
FT                 AETYGERLQLGDPSQWSQWTQRILVHMQETYRTQFETESRRSATRLTHRSL
FT                 EYDLGVNNYFTDAFTVEKIRTIFMARGEILPLSYIPNVTASDTVCPICNMR
FT                 EQENIVHFIGHCPILREIRLLHFGMAQLTRRAVYDLLNGQCWSTLYNYINQ
FT                 ALQYRNNILMENF"
XX
SQ   Sequence 4923 BP; 1603 A; 977 C; 1112 G; 1229 T; 2 other;
     tgtgtagttg agttttttat caggctccga gaaaagtgtc ttatatcaag acacccgcac        60
     cattaaaaac ataaacttac nnccaaacga cgacgcacgg ctcactgacc gtagaaaaca       120
     cggaggatca gctgtggacc aacgcacctc aggaaaatta gcactttgct ttccaagaag       180
     ctgttccagg ttttcactca tttttttcgg cgaaagctgc gaaaaactgg ggaaaggcag       240
     gaaaacgcgg acgagtcgaa ccggcgtggg aagaggtaaa caagactaga ggtggcaatc       300
     gtcagctggt cgcagccgca gtgagttgcc taacactcta cgaaaatttc aaaacctatc       360
     cagtagcggc caccgttgga gggcgccagt tacccttttt tgcaaaaata gtgcatactt       420
     ctaggcgtgt agataaaact tatagtagtc atgtctagtt cggatgaaaa agataactac       480
     ctatcaccag tgcaggcgtc gcaaaagagg aagctggaga atatgtcaca aaatattgca       540
     ggaggagcga ccttgaagga gctgacatca gctatgtcga agctgcttga tataaagtta       600
     aaagacctgc caacgaaatc agacgtcgaa gggctaaaac aggatctgaa aagcgacatt       660
     ggtgccattt cgctgcaggt caaacagtta accgacgata acacgcgact caaagaagag       720
     gtgataagcc ttcgcgctga tagagaagcc gataagcgta caataaatat gttgctagaa       780
     caacaaaaga aaaaaacgta gtgataaaag gcctaaaagt agataaaaac tgtaaactgg       840
     tggttaaaac tctaattgaa gagaaactgc atttaaaaag tgctagggtt tccgatgtga       900
     gaaagctaaa tgagcgggat ggcaaaatga tggttttggt agaatgcgaa tcccaaggag       960
     aagcggaaaa tattttgaag aatggtcata agttacgtgg aagccatgtg ttcctagaca      1020
     aggacttgac tgtagaaaaa caagcaaaca aagtggctct tctagagcta aaaaaggttc      1080
     tgctggccat tcgcagggaa ataaaagtaa aagttcaaaa cgacagcatc aacgtagacg      1140
     gaaattggat gtcgtttaat aacaacaagg ttcttatgtg gcaaggaaaa ccagctgaac      1200
     ctaaattaaa agaattatac ggaaacagtt tggaaatttc tcacattacg tatgcgttct      1260
     tatgccaaaa gtccaagtca gaaaactaaa tagaaacaaa aataaatgta ttaaatgtag      1320
     tcctatgtta gaatgtagta atgttgtagg tgtaaatgcg attaaagagt ccgatactat      1380
     agagagactg gagatcaaaa tattgtccta taacgtggca ggaataaaaa ataagcttat      1440
     atataatgat ttcttccaat acattgcgtc gtttcaaatt ttcattctgt ctgaaacatt      1500
     tttggaatcc aaattggatg cggtcgaagt aaaatttaaa gactttgtgc ttagatgggt      1560
     gcctgccatc cgaaccagcg ccagaggacg agcaagtggt ggaatgatat atggtataaa      1620
     aagagaactt cacgaacaga atataattag tttcataaat gtagatgagg caattattat      1680
     ccaactgagg actgtagaaa atgaaaacct gcacctactg ccagtgtaca ttaattgcaa      1740
     tcactgggaa agagattctg gaatgttaca tgaggtttta aaccatgtcc gattaagtga      1800
     aagtgcactg ataataggag attgtaacgc aaggttggga gaagcgcaac ttctcggatt      1860
     tgaccaacag ttaggcacaa gtgccctcga tgaagcccgt aatgccaaag acaaagtaac      1920
     agacgccaat ggccggcacc taatggacct gattgagctg ttcggcttca cggtggtcaa      1980
     tggaaggtcg gcaggcgatc ctttgggcga ttacaccttt atgagaggtg aagctcggtc      2040
     taccatcgac ctatgcatgg cacgcggcac atggataaaa accatcaaag acttggaagt      2100
     gaacagtcaa atattctctg accatctgcc gctggtagtt acagtcactc tctccacaac      2160
     atcgaacgca gtcacagcgc cgcttggact tctgccaagt ctgatctggc gtaatcgaga      2220
     gaaggagaac tataggacta agttggaccg aaacctggca acaagttgtg tggcagattt      2280
     gagaaccccc gatgaaattg aagggtttct tacagaatgc attattaaag ccgttaatac      2340
     acgaggtcga agaaagccta gagactttaa gcaggagtgg tacacagagc agtgtgaggc      2400
     agctcgaatg ctttctttta acatgctaag gcaattaaaa tcaacaaatt cagcaagtgc      2460
     agcggtaatg taccatgaag ccaacgccgc atacaagcta acttgtcaaa aggctcggac      2520
     gcaattttac attaacctag caagatcatt ggattccata acagatagca ggacttattg      2580
     gactactatt aagaaactca atggaagttc gtttgtaaaa tcaagggaag ttaatgcaga      2640
     tgatctagga aaccatttcc gtgatcttct agctcctcct gattggacgc aatccctgca      2700
     ctttgcaatg ccgtcggtac aaaatccgat tttagatggg tatgtaactg gacaagaagt      2760
     ggaaaatata attgcaatgt taaaagaaag aaaagcaccc gggccagata ggataccagc      2820
     ggaattcatt aagtacgcta cacctcaatt tacagccagc cttgtcactg ctttcaacaa      2880
     gttcttggaa tccgaagcag tcccaaagag ctttcaaaaa gcgataatct ttccgatctt      2940
     taagaaaggc gacccgaagg tgacatctaa ctatagagga atctcttttc aaaatgcgtt      3000
     agctaaagtc ttcgctgcgc tacttctcga acggcttaaa aactggttaa gagtctgcga      3060
     tattcttact gaattccaag ccggttttag aaaaggatat tcgacagtag acaacatttt      3120
     cagtctcaca agtatagcaa ggtcttatat cgacggtgga aaaaaattat acgcattctt      3180
     tgtagatttc agagctgcct ttgactcaat agacagaaga accctaacgt acaagctcag      3240
     caatatcggc atatcaacca tgtttttaaa cgtccttcag agcttgtata cggataacat      3300
     ggcggcagta tgggatggag aacaactatc tgagtggttt gccactgaag caggagtcaa      3360
     gcaaggatgt ctactcagcc cccttctgtt ttccctgttt ttaaacgata tcacggatag      3420
     cctgccatgc ggtattcaaa taggcggatg cgcgattaag gcgctgctgt atgcagatga      3480
     cattgtgatc ctcgccgaat cacccgacga actgcaagaa atgattaatg ctctgcacaa      3540
     atactgtcta ttgtggggac tatcagtaaa caccgagaag tcaaaagttc taatcttcaa      3600
     aaggcattgg cgaaggctag cgcaaaacga aaagtggaat ttggggtcaa ttcagctaga      3660
     tattgtcaag acatataaat acctgggagt ctggatttac cacaatggtc gtttcaacaa      3720
     ccacttactg gagaaacttc gagatgctaa actggccata aattgcacat ggaaatcgct      3780
     gctagggaaa aaggatgttc caatgagtag caagtacaag ctgtttagtg cagcaatgcg      3840
     atcaatatta tgttacggcg cgcaggtctg gggcatctta ccctatgaag aagttgaaag      3900
     tcttctaaga ttcttcttaa aaaagatttt tcgtctaccc agatttaccc cgaacaggat      3960
     gctatatctt gaaacaggac ttccgccgct gcatatcttt acagcagaaa tgcacttcag      4020
     atatatccag agagtggtat ccatgcccga atgtaggctg ccgcgaattc tagcgaacta      4080
     tttggtgcag gaacgtaagc aatgggtcat agaatgggtg acgcttgccg agacctacgg      4140
     agaaaggcta cagttaggcg acccttccca atggtcgcaa tggacgcaac gtatactagt      4200
     acatatgcaa gaaacgtata ggactcagtt cgagacggaa tcaaggagaa gcgcaactcg      4260
     gctgactcat aggtctcttg aatacgatct gggagtcaat aactatttta cagacgcttt      4320
     cactgtggag aagatccgta ccatttttat ggcaaggggg gaaatcctcc cactaagcta      4380
     catcccaaac gtgacagcca gcgacactgt gtgcccgatc tgtaatatga gggagcagga      4440
     aaacatcgtg cactttatag gacactgccc cattttacgg gagattcgcc tgctgcattt      4500
     tggtatggct cagctgaccc ggcgtgctgt atacgatttg ctgaatgggc agtgctggtc      4560
     aacgctttac aactacatca accaggctct gcagtaccgt aataatattt taatggaaaa      4620
     cttttaaata ctacattttt tacttcaaac acgaaactca gctctcctag tttttaaact      4680
     gattggtgga acgatctgat atctggggaa gacccgggaa gtcaggtgta gtacactggc      4740
     agttttgaca ctgggagccg agatcgacag acggttagat aaccaagtcg atttattttc      4800
     taattctttt cttgtttaat aaaaaaaaaa aaaaactagt aaatcacctt taattgtaca      4860
     tttgtaatgc cgttcactca atgttttttt ataaataaag aatactacta ctactactac      4920
     tac                                                                    4923
//
ID   RTEX-1_FoCa repbase;    DNA;    INV; 3301 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3301
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2710-2710 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           5..3187
FT                 /product="RTEX-1_FoCa_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MTKETPDIFIFLETWCTEKEACAKLSNFNITHTLVCQ
FT                 DAENSKRGRRKGGIVIGIQKQLQYAVITKRRGWIEVTIENVIQNEALTIIG
FT                 SYLAPNVDGDTEFSDLIEKIANTSEHTIIIGDLNARIGLLPNLIDGEYYPR
FT                 QSKDLQLNDRGKKLIRTARSANLVVLNGFWKGDLSGDITFQNANGRSSVDL
FT                 CISSDSVLEHINHFHVKQSIVSTHQPININLFTQIQSTSPSRNEGIETCVI
FT                 NKTKWKPEQCAEFRKTLNEKCSESSDILSNVKNTLDCLGMSQTIQLPAIYR
FT                 KKPKWFNDECKASKSAVSKMLRVARKSNEEQDLEQYHSLRAEYTKLKKEKK
FT                 QSIKQDQIKNLLNHKNSSTFWTAVREFRQHSSVSYPIEPMEWHSFYSSIFQ
FT                 SNSFPLQFEPRVVEELDHEISTFEVSLILKKLKLKKASGKDGIPNEVWKWL
FT                 TPTAINQLAAKFNDIYTTGVVPDDWTLIMLRPIFKKGDPQLPSNYRPIALA
FT                 STILKIFTTILSNRLQTWAEKYGHFSPFQAGFRKNMETLEQIFCLLTLIQS
FT                 KLRHPRGKLFAIFIDARMAFDSCLHDRMWKVLSKRGVSSKYLKVLTSLYRK
FT                 ASGQILTPNGLTTSFRFQKGVLQGEPQSSCLFNFFIDGLARRLKKSGISPV
FT                 KIGSTDFHILMFADDVVIVANSADSLQGKINVAAKFFKDRGLQCNISKTKI
FT                 VIFAKRRSSDLPPFKWNDDTIDIVDSYTYLGVTMHRNGTFNRAHKEFKEKA
FT                 TAAVMKVLNITRRSGVPPLSTQFKLFNSIARATLLYGSSIWAMKFVDDIDK
FT                 LQIRFLKKLLRLPPSTPDYFVRLETGARDTRLQHLADTLGFWERISRKKED
FT                 SPVRQCMIIQMKWTRLNSTPMQRNHCWGEDFLDLLKVAKCENLPSTLTSLV
FT                 TMRKTLLINYELHIKNQDVSRMQNSSFIPHYKLIKLKSTTEGYFNMNHSIQ
FT                 KCSLMTQLRLNKFSIKIGESYVPLNSNCPLCSDTCSVEHLMFSCTSLRSER
FT                 QSLIFPLIPNFNPTEFTNMQLYIALFSSAYSDRVLNNLFLFWHKVAKYFDL
FT                 CSDQ"
XX
SQ   Sequence 3301 BP; 1101 A; 713 C; 590 G; 897 T; 0 other;
     atatatgacg aaggaaaccc cggatatttt tatttttctc gagacttggt gcaccgaaaa        60
     ggaagcatgt gctaagctct cgaattttaa catcacgcat acactagtgt gtcaagacgc       120
     ggaaaattcg aagagaggaa gaaggaaagg aggaatagtt ataggaattc aaaagcaact       180
     acaatatgct gtaattacta aacgacgcgg ctggattgaa gttactatag aaaatgtaat       240
     acaaaatgaa gcacttacaa ttatcggatc ttatctcgca cctaatgttg atggagacac       300
     tgaattcagc gaccttatag agaaaattgc aaacacatcc gagcacacga ttataatcgg       360
     tgatcttaat gcgcggattg gcctacttcc caacctaatt gatggagaat attatcccag       420
     acaatcaaaa gacctacaac tgaacgatcg tgggaagaaa ctgattagaa ccgccagatc       480
     tgcgaacctg gttgtcctta acggtttttg gaaaggagat ctgagcggtg atattacttt       540
     tcagaatgca aatggtcgta gctcagttga tctctgtata tcatcggatt cagtactcga       600
     acacattaat cacttccatg tcaaacaatc aattgtctca acccaccaac caattaatat       660
     caaccttttc actcaaatcc aatcaacatc gccatctcgt aacgaaggaa ttgaaacttg       720
     tgttataaat aaaaccaagt ggaaacccga gcagtgcgct gaatttagaa agacgctgaa       780
     tgaaaagtgt agcgaaagca gtgacatttt atcaaatgta aagaatactc tagactgcct       840
     cggaatgtca caaaccatcc aacttccagc aatataccgc aaaaaaccga agtggtttaa       900
     cgatgaatgc aaggcaagca aatccgcggt aagcaagatg ctacgagtag caaggaaatc       960
     gaacgaggag caagatctag aacaatacca ctcactgagg gcagaatata ccaagttaaa      1020
     gaaagaaaaa aagcagtcaa taaagcaaga tcaaatcaaa aatttactaa atcacaagaa      1080
     ctcttcgaca ttctggacag ctgttcgaga atttagacaa cactcttcag tcagttaccc      1140
     gattgaaccg atggaatggc actcgttcta ctcttccata tttcagagta atagttttcc      1200
     tctccaattt gaaccaaggg tagtggaaga acttgatcat gaaatctcta cattcgaagt      1260
     atctctcatt cttaaaaagc tgaagttaaa gaaagcatca ggaaaagacg gcatcccaaa      1320
     cgaggtatgg aagtggctaa caccaacagc aataaaccaa cttgcagcaa aattcaacga      1380
     tatttatacg actggagttg tccctgatga ctggactcta ataatgcttc gcccgatatt      1440
     caagaaaggt gacccacaac ttccctccaa ctaccgtccc attgctctag cttctacaat      1500
     cctaaaaatc tttaccacaa tcctatcaaa tcgccttcag acttgggctg aaaaatatgg      1560
     acacttctca cctttccagg ctgggtttag gaagaatatg gaaaccttag aacaaatatt      1620
     ctgtctcctt accctcattc aatctaaact ccgacatcca cgtgggaaac tattcgcgat      1680
     atttatcgat gcgagaatgg ctttcgattc ctgcctgcac gatagaatgt ggaaagttct      1740
     aagcaagcga ggagtaagtt ctaaatacct gaaggttctt acatcacttt accgcaaagc      1800
     tagtggacaa atccttaccc caaatgggct tacaacatcc ttccgttttc aaaaaggagt      1860
     tctgcaaggg gaaccgcaat catcatgcct cttcaacttt ttcatagatg gtcttgcgcg      1920
     acgactgaaa aaaagtggca tctcgccagt caaaattgga tcaaccgatt tccacattct      1980
     aatgtttgct gatgacgtcg ttatcgttgc taattctgcg gatagccttc agggaaaaat      2040
     caatgttgct gcaaagtttt ttaaagaccg tggattacag tgcaacattt ctaagacgaa      2100
     aattgttatc ttcgccaaga gaagatccag tgacctccca cctttcaaat ggaacgatga      2160
     tactattgac attgtggatt cttacaccta tctaggagtg acaatgcaca gaaatgggac      2220
     tttcaatcga gctcacaagg aatttaaaga gaaagcgact gctgcagtga tgaaagtcct      2280
     caatattaca agaagatctg gtgttccgcc cttatctacg caattcaaac tatttaactc      2340
     catcgcacgg gcaactcttc tttatggctc atccatatgg gcaatgaaat tcgtggacga      2400
     catcgataaa ctgcaaatcc gtttcctgaa gaaactactc agacttcctc catctacccc      2460
     tgattacttt gttcgattgg aaacaggtgc gcgggacaca agactgcaac atcttgctga      2520
     cacattgggt ttctgggaaa gaatatcaag aaaaaaagaa gactcccccg taaggcaatg      2580
     tatgatcata caaatgaaat ggacacgttt aaactcgaca ccaatgcaaa gaaaccattg      2640
     ctggggcgaa gatttccttg atctcctcaa ggtcgcaaaa tgtgaaaacc tcccatcaac      2700
     tttgacgtcc cttgtgacta tgcgtaaaac cctcctaatc aactatgaac tgcatattaa      2760
     gaatcaggac gtctcgagga tgcaaaactc cagcttcatt ccacactaca aactcatcaa      2820
     actgaaatct actacagaag gatatttcaa catgaaccac tcgatccaaa aatgcagttt      2880
     gatgacccaa ttgcgcctaa ataaatttag cattaaaatt ggagaatcct atgtccccct      2940
     aaattcaaat tgccccctat gtagtgacac ttgttctgtt gaacacctta tgttttcttg      3000
     tacttctcta agatctgaac gacaatcatt aatttttcca ttaattccca attttaatcc      3060
     aactgaattt actaatatgc aactttatat tgctcttttt tcttcggcct atagtgatag      3120
     agtactgaat aacttatttc ttttttggca caaagttgcc aaatattttg acctatgttc      3180
     tgatcaataa ttacttattt taattttatt taactttacg atattcaata tgtaaccatt      3240
     catgatgtgc aaaggctgtt ggctatgatg caataaatca attatttatt aattattatt      3300
     a                                                                      3301
//
ID   RTEX-1_PBa  repbase;    DNA;    INV; 4829 BP.
XX
AC   .
XX
DT   09-JUN-2013 (Rel. 19.03, Created)
DT   09-JUN-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   non-LTR retrotransposon from the Pogonomyrmex barbatus genome.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4829
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 757-757 (2014).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           219..1130
FT                 /product="RTEX-1_PBa_1p"
FT                 /translation="MAPGKASVASAGSEAGKVGSKELRQRKLLTEDSASGK
FT                 KVTFKMTGAGEEKSGEWKNEWLEFRGEWLKEVKELREEVKKLREMVERDKN
FT                 RESEWEERFRDMGERLGSVERQIAGIREPMSGGEGDGESSRSGGSGRTRGS
FT                 GCSRLSEREVNKVRKWVTEKEREERRNNIVIKGLGGKIREVEENKIVWVEN
FT                 FIEKELGIECKIKMCRINKAVVIAKVEGEEKKWEIMTNKSKLRGGRIYIEN
FT                 DLSWEERKIQERIQRYKREQREKGLEVKIGTGRVKIGNVWRSWGEIEEEIE
FT                 RDRSGEREEGGK"
FT   CDS           1186..4491
FT                 /product="RTEX-1_PBa_2p"
FT                 /translation="MKQKGRVRNKRLMFWNIAGIWRQDIEFWKFVGGMEYV
FT                 CLIETWVEEKGWEKIKSRLPTTHRWGCSFARRVKKKGRAMGGFIVGVRKDW
FT                 KGDNVELKWKEEDGVVVSKIKGREGERDYVLVAVYATRNWEAIRGVIERMV
FT                 EENKEEYIVIGGDFNARIGLEGGNDEEGWSVVRKSKDKVVNSRGRDLVDLV
FT                 GEIGGNIMNGTKIGDGEGEYTYIGERGSSTIDYVIANDYCMDVVSSFKVIG
FT                 RTDSDHMPLVLELKEDEGREKNAGGEERSEEEEWRYRWKEEDIELYKERTE
FT                 GEEDEEEISEVSVEEKWGAVKELVKDAMIRVRIKRRKKKLGYKEWWDRSCT
FT                 RKKRIVHRLYKGWRIGKSSRERFLEERRSFKEHVEEKKRKWKEKEEKELRN
FT                 LKNEAEVWKVINKKRGKSNWVENSISKESWNEYFRKLLGGEEVEEERESER
FT                 GKIEEEEQVERELKTEEIAEAVKKLKKGKAAGIDGIPMEAWKYGGGKVKRR
FT                 LADLLTCIWKGGGIPEDWRKSVIATIYKKGDTEKMENYRGISLLCTAYKIY
FT                 AEVLRKRLEDEVEQGTLVPESQGGFRKGRGTMDNIFVLSHLVQRERKAGEK
FT                 RKKVYAFFADLSSAFDNANRKELWETLERKNINGTLIQRMKEIYEDTRAAI
FT                 RTKDGLSEEFKTKKGVRQGCVLSPTLFNLYIADLDERLEKRGTGGIKLGKN
FT                 RVWSLAYADDLVLLAKNREAIVNMMGTLGGFLRERKLKLNTGKSKMLVFNK
FT                 EGRERKMKWEWGKSEIEEVQTFKYLGFNFNRRGTYDFHIKELKRKGRIAAN
FT                 MVWGLGERICRDDFIRRWMMFRYLVESVMSYGVELWGWGERKELEKIMMDY
FT                 IRWMFKIDFCTPRYLITRELGMNKLKIEWGIRARKYEEKIEGMGEERWVKV
FT                 CWLEKRREGWKDLYGKEREKYYNRNGWGVVAIDGMPGVERDLIEEIRERER
FT                 DVQRQEEEHRIREAKYNKRYRRFMIENKAPSYLEVNEVRGKEKGEGIRALM
FT                 RLRCGNMEIDNKYWLKEEERKCSFCERGQDNLVHFIGECEVTKDWFEELGD
FT                 CVEERISRLENDSLDERKEKVLVKFWKEKERYKSRKAEEEREMQG"
XX
SQ   Sequence 4829 BP; 1826 A; 366 C; 1673 G; 964 T; 0 other;
     taacggactt ggttagggag cgcatgagag agtggacgtg aaaacgtgag tgtgtgattt        60
     agattagaga ttcgagtaga ataagttggc ggaggaaggt agggaagtga atgcgagaag       120
     agggggattg gaagaggtag ggagattgga gggagagtgg aggaggaaag tttagaagag       180
     atacaaagag atttaggaga gcgtagagcg ttaaggttat ggcaccggga aaggcgagcg       240
     tggcgagtgc gggaagcgag gccggtaagg taggaagcaa agaattgagg cagagaaagt       300
     tactgacgga ggacagtgcg agtggaaaaa aggtaacctt taagatgaca ggggcaggag       360
     aggaaaaatc gggggaatgg aaaaacgaat ggttggaatt taggggagaa tggctaaaag       420
     aggtgaaaga gttaagggag gaggtgaaga aattgcgaga gatggtggaa agagataaga       480
     atagggaaag cgaatgggag gaaagattta gagatatggg ggaaagatta ggcagtgtag       540
     agaggcagat tgcagggata agagagccga tgagtggggg ggaaggggat ggggaaagtt       600
     ctcgaagcgg aggaagtggg agaacgcgag gaagtggatg tagtaggctt agtgaaagag       660
     aggttaacaa agtgagaaaa tgggtaacag agaaagagag agaggaaagg cgcaataata       720
     ttgtgattaa aggtttaggg ggtaagataa gagaagtgga agagaataaa atagtatggg       780
     tagagaattt catagagaaa gaattaggaa tagaatgtaa gataaaaatg tgtaggatta       840
     ataaggcagt tgtaatagca aaggtagagg gggaggagaa gaaatgggaa attatgacaa       900
     ataaaagcaa gctaagaggg ggaaggatat atatagaaaa tgatttatca tgggaagaga       960
     ggaagataca ggaaaggata cagagatata aaagggaaca aagagaaaag gggttagagg      1020
     taaagatagg gacagggagg gttaaaatag gaaatgtctg gagaagctgg ggcgagatag      1080
     aagaggagat agagagagat aggagcgggg agagagagga ggggggaaag taggagaagt      1140
     ggaacgagta caaatttcga ctaagccgag gaggggagga ggaagatgaa gcagaaggga      1200
     agggtaagaa ataagagatt aatgttttgg aatatagcag gaatatggag acaggatata      1260
     gaattttgga aatttgtagg agggatggag tatgtgtgtt taattgagac gtgggtagaa      1320
     gaaaaggggt gggagaaaat taagagcaga ttaccgacta cgcacaggtg gggatgtagt      1380
     tttgcaagga gggtaaaaaa gaaaggcagg gcaatggggg gatttattgt gggagtaaga      1440
     aaagattgga aaggggataa tgtagaacta aaatggaagg aggaagatgg ggttgttgta      1500
     tcgaaaatca aggggaggga aggggaaaga gattatgtat tagtagcagt ctatgccacg      1560
     agaaattggg aggcgataag gggagtaata gaaaggatgg tagaagagaa taaagaggag      1620
     tatatagtaa taggggggga ttttaatgca agaattggtt tagagggagg aaatgacgag      1680
     gaaggatgga gtgtcgtaag aaaaagtaag gataaggtag ttaacagcag aggcagagat      1740
     ttagtagatt tagttgggga aataggcggc aatatcatga atgggacaaa gataggagac      1800
     ggggaaggcg aatacactta cataggagag aggggcagct ccacgatcga ttatgtaata      1860
     gcgaatgatt attgtatgga cgttgtaagt agctttaagg taatagggcg gacggactca      1920
     gaccacatgc ccctggtact ggaattaaaa gaagatgaag gaagagagaa gaacgcagga      1980
     ggggaagaga ggagtgaaga agaggaatgg agatatagat ggaaggagga ggacatcgaa      2040
     ttatataagg aaaggacaga aggggaagaa gacgaagagg agataagcga agtctcagta      2100
     gaagaaaaat ggggggcggt aaaggagttg gtgaaggacg caatgataag agtaagaata      2160
     aaaagaagaa agaagaaact aggttacaag gaatggtggg acaggagttg cacgaggaag      2220
     aagaggatag tacatagatt atacaaagga tggaggatag gaaagtcgag tagggaaaga      2280
     ttcttggaag aaaggagaag tttcaaagag catgtggagg agaagaagag gaagtggaag      2340
     gagaaagaag aaaaggaact aagaaattta aaaaatgagg ccgaggtgtg gaaggtaatt      2400
     aacaagaaaa gagggaaaag taactgggtg gaaaattcta taagtaaaga aagttggaat      2460
     gagtacttta gaaaattgct tggaggagag gaagtagagg aagaaaggga aagcgaaagg      2520
     gggaagatag aggaggagga acaagtagaa agggaactga agacggagga gatagcggag      2580
     gcagtaaaga agctgaagaa aggaaaggca gcagggatag acggtattcc tatggaagcg      2640
     tggaagtacg gaggggggaa ggtgaagagg aggttagcag acctgctgac gtgtatatgg      2700
     aaaggaggcg gaataccaga ggactggaga aaaagcgtca tagcaacgat ttataagaaa      2760
     ggagatacgg agaaaatgga gaattataga gggatatcgt tgctttgcac agcgtacaag      2820
     atctacgcgg aggtgttgag gaaaaggttg gaggatgagg tcgagcaggg gaccctagtg      2880
     cccgagagcc aaggtggctt taggaagggt agggggacca tggataatat ttttgtgcta      2940
     agtcatctgg tgcagagaga gaggaaagca ggagaaaaaa gaaagaaagt gtatgccttt      3000
     tttgcagatt tgagctcggc ctttgacaat gcgaatagga aggagctatg ggagacactg      3060
     gagaggaaaa acatcaatgg gacactaata cagaggatga aggaaattta tgaagatacg      3120
     agagcagcaa ttaggacgaa ggatggtcta tcggaagaat tcaagacgaa gaagggagtg      3180
     agacaggggt gtgtactgag tccgacgctg tttaatttgt acattgcgga tctagatgag      3240
     cgtctagaaa agaggggaac aggcggaata aaactaggga aaaacagagt gtggtcgctg      3300
     gcatacgcag atgatttggt gttgttagca aaaaataggg aggctatcgt gaatatgatg      3360
     gggactttag gaggattttt aagggaaagg aaactaaaat taaatactgg taagtcgaag      3420
     atgttggttt tcaataaaga ggggagggaa aggaaaatga aatgggaatg ggggaaaagc      3480
     gagatcgagg aagtgcagac tttcaagtat cttggtttta actttaatag gcgagggact      3540
     tacgattttc atataaagga actaaagaga aaaggaagga tagcggcaaa catggtatgg      3600
     ggattaggag aaagaatttg tagggatgat tttataagga gatggatgat gttcaggtat      3660
     ttagtggaaa gtgtgatgtc ctatggggta gaattatggg gttgggggga aaggaaagaa      3720
     ttagagaaaa taatgatgga ctacattaga tggatgttta aaatagactt ttgtacacca      3780
     agatacttga tcacgaggga attagggatg aataagctta aaatagaatg gggtattaga      3840
     gcgaggaaat atgaggaaaa gattgaagga atgggggagg agagatgggt aaaagtctgt      3900
     tggttggaaa aaaggagaga gggatggaag gacttatatg gaaaggagag ggagaaatat      3960
     tacaatagaa acggttgggg ggtagtagcg atagatggga tgccaggtgt agaaagggat      4020
     ttaattgagg aaataaggga aagagaaagg gacgtacaac gtcaggagga ggaacatagg      4080
     attagggaag caaaatataa taaaaggtat agaaggttta tgatcgagaa taaagcacct      4140
     agctatttag aggtaaatga agtgagagga aaggaaaagg gggaaggaat aagagcatta      4200
     atgagattaa ggtgtggaaa tatggaaata gataataagt actggttaaa agaggaagag      4260
     agaaaatgta gtttctgtga gagggggcag gataacctag tacactttat aggagaatgc      4320
     gaagtaacaa aagactggtt tgaggaactg ggagactgcg tagaggaaag aataagcagg      4380
     ttggagaatg atagcttgga tgagaggaaa gagaaagtgt tagtaaaatt ttggaaggag      4440
     aaagagagat ataagagtag gaaggctgaa gaggagagag agatgcaagg gtaggggtat      4500
     atgaaggtgt gttttctata tattttatgt atgttatgta ttatatgtat tttatgtata      4560
     cgtgatgtta tgttatatat gatatagtat tttatgtatc tcgtatactt aatgtagtag      4620
     ggtgattgga agggacacaa tgcaatgcct aggcattaat taagtataag tataagttgt      4680
     ggcgagattc aggaagtcga gtatttagat ttgaatatgg atggatgcgc ggataggagt      4740
     ggagggatga gtgtcttaag gccttatttg taaaccaagt cccgcttctt ggcgaaagcc      4800
     gaaggtacaa taaatatata tatattaaa                                        4829
//
ID   RTEX-1_RPr  repbase;    DNA;    INV; 4824 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4824
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3483-3483 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus. Low-copy.
XX
FH   Key           Location/Qualifiers
FT   CDS           268..1206
FT                 /product="RTEX-1_RPr_1p"
FT                 /translation="MELQENKQQEGPLVSGGGQDLVNVLLSKLDSISLDVN
FT                 SIKTDMASMKVEHTNLIATVNSIKVDLTNKFEIVNKKLKENSTQILLLKKE
FT                 KNAMKKELENTYSLINENLQSTQYNFIRILNVPVSENDNPMLAVKKISETX
FT                 NFVFNADKIDFCYRRKSRNNYSAPIFLKFLSDKDKNSFLKQKQLNKPKLTT
FT                 NLFNDGNSRPIYISEYMSPFNNALFKKGKELKDAGHIHSVWFSRKRVWYQR
FT                 TVQSTPTMVKKMDDYPSNYSDTMTDIDGELDTDFSEQSFKMGNKRTKKRKS
FT                 TSNLQETLRPFLVSTKRGENK"
FT   CDS           1362..4622
FT                 /product="RTEX-1_RPr_2p"
FT                 /translation="MGYEIICLSETWLVAPLTNPPLILKEYNLFYSNALKE
FT                 KSKGRPSGGLMIVCHKRLKNVEILDCSEWWIFIKISTYPLHTIIGSIYFKP
FT                 DLDINPVLESFLEVLENIKNNHTDYVFIIGGDFNCRMGDMDQNIREFTYHS
FT                 QVLTHRISLDHVHSKRGATLLNFFDEESFILLNGRTVNDHPAHFTYVASVG
FT                 KSIIDLVWADINSLPYIRDLKVLETISNSDHFPVECSLLLNCHLVSPQKSK
FT                 PEVQIFEKLIKWNPTKLFHDSMSKSRNIAYVFEDKNPNDINDHLIKTMKDI
FT                 AFSLNMFKNRPVCVNNNYNRKFKKPWFDLDCFNSRKNLRILYRNVKKAKYD
FT                 TEILHLYLKEKYTYRNLLKAKKQEYNNLITLELSNCANIKSFWQTVNKLKF
FT                 KNINGNNTIPIKEWDDYLRLQFPIKNLATKYYFDVCHPFLDQPISKSEILQ
FT                 SIMKSKAGKSAGLDEISYDFYKCLPENWLLFLEVLFNKVLETEIIPKKWTE
FT                 VVMIMMHKKGDKSLVENYRGIGLVNCIAKLFTQIIFFRMYELSEINNFLPE
FT                 SQNGFRRNRGSLDDVFILNSIINIHFGLRKKNLYLLFIDFKQAFDSLNHHI
FT                 LWTKLKQLGFFGKMFRIIQKIYSMCTARIRSNNSLTSQLKISRGVIQGEIL
FT                 SPLLFNLFIGNMEEYFRSNGATGIKIDNNHDIISLGYADDLVIMGDSYTDI
FT                 KKKLDLLYLYCINNELTVNVNKTKILKLGLGREPKKQRKFYFNNQEIEKVK
FT                 QFDYLGITFSRSGQFNDTVSSSIAKANAATGTAINILCKGKSNSWKSRTYL
FT                 FQSLVKSCLLYCCPVWALRHGDQLEKVQMNYYKRLLCLPRTTPNHLIRLET
FT                 DQLKLSFNILKSTLHWMFKISNSAENSFLYLCFATLVNYSVLKPGEIKYNW
FT                 FSQAKECLKCISIDDLGPSQELVRVKRNIKITLERYKNYLIQADLERVLKS
FT                 SFNIFWNNAVLLNETQKYLQSSIPFKFIKIYAQIRLSGPYFIKLTLNKITY
FT                 KINPKNLCLLCNLNEPETLTHIFIKCPLYKLFRKQLNITAENDASSEFTNL
FT                 FFNTPFEHTIYRIYKFLENVLKLRAFVLNE"
XX
SQ   Sequence 4824 BP; 1774 A; 687 C; 778 G; 1584 T; 1 other;
     ataatttaca tggttctagt ttattaactt ggataaaatt tggtgaaatt gcagtttaaa        60
     gtgattttga taatctgtaa aattttcaaa aaattctaac gagccgtttc cgtgaaatta       120
     attaatttat ggtgattaca atagtgaaac aaagtacgtt cgtataaact tgtatacatt       180
     atacgtatat atgtgataag agtgggggct cttgcgacat atctaataac aaataaccat       240
     tatttattta tctgaaaggt actagttatg gaattacaag aaaacaaaca acaggaggga       300
     cctttagtaa gtggtggggg tcaagatctt gttaatgtac tactatcgaa attagattca       360
     atttctttgg acgttaattc tattaaaact gatatggcat cgatgaaagt tgagcatacc       420
     aatctgattg caacggtgaa ttcaattaag gtagatctta caaataaatt tgaaattgtt       480
     aacaaaaaac ttaaggaaaa ttctacacaa atattattgt taaaaaaaga aaagaatgcc       540
     atgaaaaaag aacttgaaaa tacatactct ttaattaacg aaaatttaca aagcactcag       600
     tataatttca tcagaattct taatgttcca gtatcagaaa atgataaccc tatgttagca       660
     gttaagaaaa taagcgaaac aatnaatttt gtttttaatg ccgataaaat agatttctgc       720
     tacagaagga aatcgcgtaa caattactca gctcctatct ttcttaaatt tctttctgac       780
     aaagataaaa atagtttttt gaaacaaaaa caactaaata agccaaaatt aaccaccaat       840
     ttattcaatg atggcaattc acgcccaatc tacatcagtg agtatatgtc acccttcaat       900
     aatgccctat ttaaaaaagg taaagaattg aaagacgcag gtcatataca ttccgtttgg       960
     ttcagtagaa aaagagtgtg gtatcaacgt actgtacaaa gtactcctac aatggtcaaa      1020
     aagatggatg actacccatc caattattct gacacgatga cagacatcga tggggaactg      1080
     gacacggatt tttctgaaca gtctttcaaa atgggcaaca agagaactaa aaagaggaaa      1140
     tcaacttcaa atttacagga aacgttgagg ccttttttag tatcaaccaa gaggggagaa      1200
     aacaaataaa ctcaaatctg gatgaagcaa gtttaaatca atctagtgta agtaaccaga      1260
     attcaaataa aaccttaggc tctaatataa ataactcttt taaattgtta ttttggaatg      1320
     ttcatgggtt caaaaatttt catacacatt ttgattcatt aatgggttat gagattattt      1380
     gtttgagtga aacctggctg gtagctccat taacaaatcc cccattaata ttaaaagaat      1440
     ataatctgtt ttattctaat gcattaaaag aaaaaagtaa aggtaggcca agtggagggc      1500
     tgatgattgt ctgtcataaa cgtttgaaaa atgtggaaat actcgactgt tcggaatggt      1560
     ggatttttat aaagatttct acgtaccctc tgcatacaat tattggttcc atctatttta      1620
     agccggattt agatattaac cctgttttag agagttttct tgaagttttg gagaatataa      1680
     aaaataatca tactgattac gtctttataa tagggggcga tttcaattgc agaatgggtg      1740
     atatggatca gaatattaga gagtttactt accattccca agtattaaca catagaatta      1800
     gcctcgatca tgtacattca aaaaggggtg ctacattact aaattttttt gatgaagaat      1860
     cgtttatttt gcttaacgga agaacagtta atgatcatcc cgcacacttt acctacgtag      1920
     catcagttgg caaatcaatc attgatttag tttgggcaga cattaatagt ctaccatata      1980
     tccgagattt aaaagtactt gagacgatat cgaattctga ccactttccg gttgagtgtt      2040
     ctttgttact taattgtcat ttggtatcac cccaaaaaag taaaccagaa gttcaaattt      2100
     ttgaaaagtt aatcaaatgg aatcccacta aattgtttca tgattccatg agtaaatcta      2160
     ggaatatagc ttatgtcttc gaagacaaaa atccgaatga tattaacgat catttaatta      2220
     aaacaatgaa agatattgct ttctcactga atatgtttaa aaatagacca gtttgtgtta      2280
     ataataacta taatagaaaa tttaagaagc cttggtttga tttggattgt tttaatagta      2340
     gaaaaaatct tagaatattg tatagaaatg ttaagaaagc taaatatgat actgaaatat      2400
     tacatttgta tcttaaagaa aagtatactt atagaaactt acttaaagcc aaaaaacaag      2460
     agtataataa cttgattacc ttagaattat caaactgtgc aaatataaag tctttttggc      2520
     aaacggtaaa caaattaaag tttaaaaata taaatggaaa taatacaatt cctattaaag      2580
     aatgggacga ttatctccgt ttacaatttc caattaaaaa tttagctact aaatattatt      2640
     ttgatgtgtg tcatcctttt ctagatcaac ctatttctaa atctgaaatc ttacagtcga      2700
     ttatgaaatc aaaagcaggg aaatcggcag gcctagatga aatatcgtat gatttttata      2760
     aatgcttacc tgaaaactgg ttgttatttt tagaagtttt gtttaataaa gttttggaaa      2820
     cagaaataat tcctaagaaa tggacagaag ttgttatgat tatgatgcat aaaaaaggag      2880
     ataagtcact agttgaaaat tacagaggca taggtttagt taactgtata gctaagttgt      2940
     tcacacaaat aatatttttc cgtatgtatg agttatcgga aattaataac tttttaccag      3000
     aaagtcagaa tgggttcaga aggaatagag ggtccttgga tgatgttttt attttaaact      3060
     ctataataaa tattcatttt ggcctacgaa aaaagaatct ctatttgtta tttatagact      3120
     ttaagcaagc ctttgattcc ttaaatcacc atattctgtg gactaaacta aagcaactcg      3180
     gatttttcgg taaaatgttc agaataattc aaaaaattta tagcatgtgt acggcaagaa      3240
     ttagaagtaa caacagtctg acttctcaac tgaaaatttc ccgaggcgta attcaagggg      3300
     aaattttaag cccgttactt ttcaacctat tcattggcaa tatggaggaa tattttagaa      3360
     gcaatggtgc caccggaata aaaatcgata ataaccacga tattatttca ctaggatatg      3420
     ctgatgattt ggttatcatg ggtgactcat atacagacat aaaaaagaag ctggacctac      3480
     tatatctgta ttgcataaat aacgaattaa cggtgaatgt taacaaaaca aaaattctaa      3540
     aattaggttt aggaagggaa cccaaaaaac aaaggaaatt ttatttcaat aatcaagaaa      3600
     tagaaaaagt aaaacaattc gactacttag gcataacttt ttctcggtct gggcaattta      3660
     acgatactgt atcttcctcg atcgccaaag cgaatgcagc aacaggaaca gcgataaaca      3720
     ttctttgcaa gggaaaatct aactcctgga agtctagaac gtatttattt cagtctttag      3780
     tgaaaagctg tttactatat tgttgtcctg tatgggcatt gaggcatggc gatcaattgg      3840
     aaaaagtaca aatgaattat tataaacgtt tactgtgtct cccgcggacc acaccaaatc      3900
     acttaattag attggagact gaccagttaa aactttcatt taatatttta aaatcaactc      3960
     ttcattggat gtttaagatc agcaattcag ccgaaaatag ttttctatat ctctgttttg      4020
     cgacccttgt gaattatagt gtacttaaac caggggagat caaatataat tggttttcac      4080
     aagccaagga atgtctgaaa tgcattagta tagacgattt aggtccttca caggagttgg      4140
     tcagagttaa gagaaacatt aaaataactt tagaaagata caaaaattat ttaattcaag      4200
     ccgatttaga aagagtctta aagtcatctt ttaatatatt ttggaataat gcagtattgt      4260
     tgaatgaaac tcagaaatat cttcagagct ctattccttt caaatttatc aaaatttacg      4320
     cccaaataag actttctggc ccttatttta tcaaacttac acttaataaa attacctata      4380
     aaattaatcc aaaaaacctt tgccttttat gtaatttaaa cgaacctgaa actttaacac      4440
     atatatttat aaagtgtccg ttatacaagc tatttagaaa gcaattaaat ataactgcag      4500
     aaaacgatgc cagttctgaa tttacaaatc tgttttttaa tactcctttt gaacatacaa      4560
     tatatcgtat ctataagttt cttgaaaatg tattgaaatt aagagccttt gttctaaatg      4620
     agtgatcagt tataatttct ttttgatatg gtctaagttt ctgtttattt aattttattt      4680
     aatttatttt aagtttccgg cttttggttt tttgtgttgt gattaatata ttatattagg      4740
     aatatttgtc atagtactaa gtagcagaac tccatttgta acaggtttta cctttgtaca      4800
     aatttgaata aataaataaa taaa                                             4824
//
ID   RTEX-2_BTa  repbase;    DNA;    INV; 3599 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3599
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 725-725 (2018).
XX
DR   [1] (Consensus)
XX
CC   Elements are ~96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3416
FT                 /product="RTEX-2_BTa_1p"
FT                 /translation="MKQTKVVNTQLNDTSPANPIKIFQWNCQGWGNIYNLT
FT                 TSEVXKILEHDIIIMYETWLVNEVKSDTFKNYMSVSCNAIKEKSKGRASGG
FT                 VIILINRDLIRNESDLKIVDKCYMWIFLELKNFANCIVIGAVYISPGKNDE
FT                 VCMELFEESLVSVTERSKNAHIYILGDFNARVGELNQLNQLKGDENNPLAC
FT                 TNLDIVRRSSDEKVTKRGTLLTEVMEASGMLLINGRSFSDSPAQFTSLNTN
FT                 GKSVIDLLWVNSQIWDLILDFLVMNKFSVSDHFPCSLILKTNAMRKTNHGI
FT                 QNKINASWEITRIKWDKEKTKLFNEQLKLKLQNFKKNERENGVQDQETLTR
FT                 GIKEVAAEIGLQQVVKRGGSTATGRNQWFDQECKVQKRLVNKAARTMRNTN
FT                 FDQTHVKIFLAEKKKYKALIKSKKRIAINKLKTEIGNVKNSKEFWKTVKKL
FT                 KGFKKHTNPIAVDTWEQYLQNFYGSEISSETDFYDARHPILDRDIDKKELD
FT                 MILQKLKTNKTPGSDGIAYEFFKNLDSEVGKPALLQTLNKIMNGSSIPNAW
FT                 GEIKLSLIFKKGDPQNPDNYRGIALINSITKILTYIIANRISNFAEENNLI
FT                 PESQAGFREKRGCQDNIFTLTSLIQIQNFKKRKSYLIFVDFKKAFDTVNHN
FT                 LLWKKLYKLGVSSNIIRIVRNLYKIANIVVDLEGQLSKPVKINKGVLQGDP
FT                 LSALAFILFIADIETQLRKHVNGIKITPLADILMLAYADDLVIFADSPGDA
FT                 QRKLNLLREYCLENDLIVNVLKTKILICQRGRKPKFXPKFKYGEEEIEIVN
FT                 SYVYLGVKFFSNGLFAQQAHDAVASAXISAGTXRQILXKXKNDSFESVITL
FT                 WNAITTTSLLYASEIWALRYINQLETAQCKFLKGTLQLQKCTPHYIIRAEA
FT                 NVEKLETRVIARALIWLLKIGNMPKTRYPKLCLDKLIELDKSRMNNIKHNW
FT                 VTQLKMILGTANNQALLNEDLSLAETKIKAATILANLRIKLINDDLSKIEN
FT                 SSFTPLYKQINTSNSHAEQQANYLNYRINFKQKRVFSQLRTHNEKYLKIGI
FT                 NQCWYKVNIKEQCPICNLCRLEKLEHILFECPMYXSVRNFYFKNVPSSMSI
FT                 LKKSAKIEHISALYMFLSSAMKIRSFILNE"
XX
SQ   Sequence 3599 BP; 1375 A; 599 C; 646 G; 970 T; 9 other;
     gaatgaagca aacaaaagtt gtgaacacac aacttaacga taccagccca gcaaatccga        60
     tcaaaatctt tcaatggaac tgccaaggtt ggggtaacat ctacaaccta actacatcgg       120
     aggtaaakaa aatcctagag catgacatta taatwatgta tgaaacctgg ctcgttaatg       180
     aggtgaaaag tgatactttt aaaaattaca tgtcagtctc ttgtaacgcc attaaagaaa       240
     aatctaaagg tagagcttct ggaggggtga taattttgat aaacagagac ttaataagaa       300
     atgaaagtga tttaaaaatt gtagataaat gttatatgtg gattttccta gagctaaaga       360
     actttgctaa ttgtatagtc ataggagcag tgtacataag cccaggaaaa aacgatgagg       420
     tgtgtatgga actttttgag gaatcactag taagtgtaac ggaaaggtcg aaaaatgcac       480
     acatatacat attaggtgat tttaatgcta gagtagggga attaaatcaa ctgaaccaac       540
     ttaaggggga tgaaaataat cctcttgcat gcacaaatct tgatatagtt agaagatcaa       600
     gcgatgaaaa agtaactaag agaggaaccc tacttactga agtaatggaa gcgtctggca       660
     tgttactgat aaatggacgt tcattctctg actctcctgc tcaattcacc tccctaaata       720
     ccaatgggaa aagtgtaata gacttactgt gggtgaactc acaaatttgg gacctaatac       780
     tagatttttt agtgatgaat aaattctcag tatctgatca ttttccttgt tctttaatcc       840
     ttaaaacaaa tgcaatgaga aaaacgaatc acgggatcca aaataaaata aatgcgagct       900
     gggaaataac aagaattaag tgggacaagg aaaaaaccaa attgttcaat gagcagttaa       960
     aactgaagtt acaaaatttt aaaaagaatg agagagagaa tggggtccaa gaccaggaaa      1020
     cattaaccag aggtattaaa gaagttgccg ctgaaatagg cctacaacaa gtagtgaaaa      1080
     ggggtggcag tacggctacc ggaagaaatc aatggtttga tcaagaatgt aaggtacaaa      1140
     aaagactggt aaataaagca gccagaacca tgagaaacac aaatttcgat cagacccatg      1200
     tcaagatctt cctcgcagaa aagaaaaaat acaaagcatt aattaaaagt aagaagagaa      1260
     ttgctattaa taaactgaaa actgaaatag gaaatgtgaa aaattcaaag gaattttgga      1320
     aaactgtaaa aaaactaaaa ggttttaaaa aacatacaaa ccccattgca gtagatacgt      1380
     gggagcaata tttacagaac ttttacggga gcgagatttc ctcagaaacc gacttttatg      1440
     atgctagaca tccgatttta gatagagata ttgataaaaa agaattagat atgattttgc      1500
     aaaaactgaa gacaaataaa acaccaggct cagatggaat agcatacgag ttctttaaaa      1560
     acttagatag cgaagttgga aaacctgcac ttttgcaaac gttaaataaa attatgaacg      1620
     gaagttccat cccaaacgcg tggggtgaaa ttaaattatc cttgatattc aaaaaaggtg      1680
     accctcaaaa tccagataac tatagaggta tagcattaat taattccata acaaaaattt      1740
     taacctacat catcgckaac cgcatcagca atttcgccga agagaataac ttaatcccag      1800
     agagtcaggc tggttttaga gagaagcggg ggtgccagga taatattttc actctaactt      1860
     cacttattca gatccaaaac ttcaaaaagc gcaaatcata tctaattttt gtcgatttta      1920
     aaaaagcctt cgatactgtt aaccataatt tgttgtggaa aaaattatat aaattaggag      1980
     tgtccagtaa tattataaga attgtaagaa acctttataa aattgcaaac attgtcgtag      2040
     atttagaggg tcaattatca aaacccgtta aaattaacaa aggagtcctc caaggtgatc      2100
     cgcttagtgc cttagcattt attctcttta ttgcagatat tgaaacacaa ctgagaaaac      2160
     atgtgaacgg aataaaaatt actcccttgg cggatattct aatgttagct tatgcggatg      2220
     atttagttat ttttgctgat tcccctggag atgctcaaag aaaactgaac ctcttaagag      2280
     aatattgctt agaaaatgac ctgattgtaa atgtgctgaa aacaaaaatc ctcatttgtc      2340
     agagagggcg aaagccaaaa tttagmccca aatttaaata tggagaagaa gaaattgaaa      2400
     ttgtgaacag ttatgtttat ctaggcgtaa aattttttag taatggtttg tttgcgcagc      2460
     aagcccacga cgcggtggca agtgccawca tctccgcggg aacawtaaga cagattctag      2520
     ktaaakctaa aaacgactcg tttgaaagtg tcattactct ctggaatgca atcaccacaa      2580
     cctcgctact atacgccagc gaaatatggg cactaaggta tattaatcag ttggaaacag      2640
     cgcaatgtaa attcctcaaa ggaacccttc aattacagaa atgcaccccg cactacatca      2700
     tcagagcaga agcgaatgtt gagaagctag aaaccagggt gattgctcgt gcattaattt      2760
     ggctacttaa aataggaaac atgcccaaaa ccaggtatcc aaaattatgc ctagataaac      2820
     taattgaact agataaaagt aggatgaaca acatcaaaca caattgggta actcaattga      2880
     aaatgatact aggtacagca aacaatcaag cactgctaaa tgaagatctg agtctcgcag      2940
     aaactaaaat aaaagcagct actattcttg ccaaccttag gattaaatta ataaatgacg      3000
     acttaagtaa gattgaaaac tcatccttta ccccactcta caaacaaata aatacttcaa      3060
     atagtcatgc cgaacaacaa gctaactact tgaattatcg tataaatttc aaacagaaaa      3120
     gagtttttag ccagctgaga acacacaatg aaaagtatct caaaattgga ataaatcagt      3180
     gttggtacaa agtaaacatt aaagaacagt gccctatctg caatctatgc cgtctggaaa      3240
     aactagaaca tatcctcttt gaatgtccaa tgtacastag cgttaggaac ttctatttta      3300
     aaaatgtacc aagctcaatg tcaatcctaa aaaaatcagc aaaaattgag cacatttctg      3360
     cactatatat gtttttgtca tcagcaatga aaattagatc ttttatccta aacgagtaga      3420
     aagagtagac gagtagaccc taaattctta cacttttaca cttttatact tttatacctg      3480
     gcttatgatg cttttgtttt tgtttttttt taatgaacct catataattg tcaagaacct      3540
     ctttttataa acccgttatt ttgggtaaaa taaaatacta ttctattcta ttctattct       3599
//
ID   RTEX-2_CoFl repbase;    DNA;    INV; 5347 BP.
XX
AC   .
XX
DT   21-OCT-2019 (Rel. 24.11, Created)
DT   21-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Copidosoma floridanum genome -
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-5347
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Copidosoma floridanum
RT   genome.";
RL   Repbase Reports 19(11), 2385-2385 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           229..1758
FT                 /product="RTEX-2_CoFl_1p"
FT                 /translation="MAGKPVERGAGEEGKXITPVEIEKRGRGRPRKDAAEK
FT                 KELEERSIMENFLKCGSTRFEIAASGRNKVQHSPVRKDGDDGAQEKGSQQL
FT                 GNEKKEGETVKKSTTGSLEQGCKEDRVKEKASEVKESEEKQEKTLLTEEAE
FT                 SLITDRREQTVQRSGEEKGGQSSVRLKMAGAVTEVEQQRAAEETASGSQQK
FT                 AQEKIQHQRDTSEKQRSDDDKRRYNSVEGAVDKLIVRVANLEESLALVIGE
FT                 KNSVIAEVSSVRAELKRETVVRERLMCEVVELKKQRDRERCATGSLKSELD
FT                 QLKRSIANHIVSDEMQRGRGVDKEGKGEGDGQNTVQSSSQGAGEGKWVGER
FT                 EELTKRDHWPSSPDALSHSELKYELLERQRRKNNIMIRGFRTVGNGIGSEI
FT                 ISVLQSYMNVVAEIXKIKAIGGALVVSLGSLRNKTQIMKNKKRLKGIDIWI
FT                 EDDYTEREKEVQGWIEEVARYEGERGREIQVGYLKIKIQRIWYNWVEEKGG
FT                 LIESGGGKIQTFRQ"
FT   CDS           1724..5098
FT                 /product="RTEX-2_CoFl_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RVGEEKFRHFVNRGKGKEKRDLRMLSWNIAGMKKIIT
FT                 IKKYLYNFDIIALQETWLEKGNESGWLGRLDKSYEWTACAAIRENKKGRAK
FT                 GGVLVGIKKSIKKAEVGKWDYGVVISGVDLRNDKKLCIIVVYNNVNIDVMI
FT                 SKLKGIVEEGIGRGEQVIIAGDINARIGEWQINSEGEREESRKSCDKVTNR
FT                 EGKKLLNMCEETGLTIRNGATEGDWGGEITFVGDGGSSVLDLVLELESEQG
FT                 SLIKELKIGIKMESDHLPIEVKLHGGGGREKVETKEKGEETKRLKWDGKKK
FT                 DQYRKEMTNRGKDLEVEGESMQEGWEALVGAIWEVGERVGMVKKGRRENCE
FT                 WSVEWDEEVKAQKKKVWGALKKWLETKDEGDKAELKRERGAVRELRKRKLE
FT                 EERXRKWKLVDESRKMTEFWEAIAQFRPRRKNKGGGGIKGEEWVTHFKKIL
FT                 GADKLSDAGVEGERVGXSHEEWEELNSEICEQEVRKALGKMKNKKAAGEDG
FT                 ITAEFLKELPEXWLKKLTGVLNRVFEEARMIKGWEIARIFPIYKAGDENDA
FT                 KNYRGVSLLDMGYKLLTNILANRLRGSLELRDTIDESQAGFREGRSTRDHI
FT                 FVLNSIISNSLKEDKGKVFVCFVDFKTAFDTIDRGILIEKMRKLGIKGKFL
FT                 EMVKNIYSRTINEIITREGITEKFETKQGVRQGCPLSPFLFNIYINDMEEK
FT                 WRAKNEGGIVIGGKKIFSLKFADDVAVVASSREGLQCMLNDLQKYEEKNRM
FT                 EVNTYKTKIMIFRKGGRKKESEKFTFRDEVIQVVNEYKYLGFWFSTRNTLS
FT                 THVNKITNKVKKAINAVWGVWKRAKLGSLKGRLYLLDTIVKAGCLYGVEIW
FT                 GWKRWEQIEKVQGKFVKMALGLNENTPAYIWRREANRKSLEIETRRRAGDY
FT                 LISIAEMKDNRWPKICLKEEIRGLGNGNASSWGRMVAETFKEVGDGVGLIG
FT                 MFDTLERWDLXKRMTDGLKVKEDQEVQLDWGRIKRSEYCDYYKHIKQKLGT
FT                 EDYWEKKVWGDNVKEQWTRLRCGSVGKAGKKGFLDSTCRVCKRREESIQHI
FT                 FYCQIARKKINVEWPGAAEEVGLKGSEEAIRQRLVRLLEGDPVEVICKYVK
FT                 EFEKVARSSAEDKWGGG"
XX
SQ   Sequence 5347 BP; 1998 A; 509 C; 1752 G; 1074 T; 14 other;
     ggaggttggg ttgcgcggtc gtaggggtaa cacgtgtgcg gaggcagctc cgcataaaag        60
     agttkmttca gcggttcaaa gtggaagaaa agtgaaaagg aagtgataaa aagatagtgc       120
     gggaggtgat ctattaagac aggtgttatc ctaagtaaat acgcgcgcaa gccaggaaaa       180
     gaaaggaaat aagttcggca gagccagcga ctcagatagc aagaaaaaat ggcgggcaag       240
     ccggtagaga gaggagctgg ggaggaagga aagkcgataa cgccagtgga gatagagaag       300
     agaggtaggg gtcggccgag aaaagatgca gcggaaaaga aagaacttga ggagaggagc       360
     atcatggaaa actttttgaa gtgcggaagt actagatttg agattgcggc gagtggaagg       420
     aataaggtac agcactcacc tgtgaggaaa gatggggacg acggcgcaca ggagaaaggg       480
     agtcagcagc tggggaacga gaaaaaagaa ggcgagacag tcaaaaagtc aacgacggga       540
     agtctggaac agggatgtaa agaggatagg gtgaaagaaa aggcatcgga ggtcaaagaa       600
     agtgaagaaa aacaagagaa aacgctgctg acggaagaag cggagagctt gattaccgac       660
     agaagggaac agacggtaca gagaagtggt gaggaaaaag gaggtcaatc gtcggtaagg       720
     ctgaaaatgg caggagccgt tacagaggta gagcagcaga gggcagcaga ggagacggca       780
     tctggttcgc agcagaaggc gcaggagaaa atacagcatc aaagggacac gtcggaaaag       840
     cagcggagcg acgatgataa gcgaaggtat aacagcgtag agggtgcagt agataagtta       900
     atagtgcgtg ttgcgaattt ggaagaaagt ttagctttgg taatcgggga gaaaaacagt       960
     gtgatcgcag aggtaagcag tgtgagggca gaattaaagc gtgaaactgt agtgcgtgag      1020
     aggttgatgt gtgaagttgt agagttaaaa aaacaaaggg acagggagag atgtgcgacg      1080
     ggcagtttga aaagtgagct ggatcaatta aaaaggtcga tagctaatca tatagtcagt      1140
     gatgagatgc agagggggag gggggtagac aaggagggaa aaggggaagg agatgggcaa      1200
     aatacagtgc aatcgagttc gcagggggca ggtgagggga agtgggtagg tgaaagagag      1260
     gaattaacga aaagagacca ctggccgagt agtccagacg cgttgtcgca tagcgagcta      1320
     aagtatgagt tattagagag acagaggagg aaaaataata taatgataag gggatttaga      1380
     acagtgggaa atggcatagg gagcgaaata ataagtgtat tacagagtta tatgaatgtt      1440
     gtggcggaaa ttwaaaaaat caaggcgata ggaggtgcgt tagtagttag tttgggatct      1500
     ttgagaaata aaacgcagat tatgaaaaat aagaaaagac tgaagggtat tgacatatgg      1560
     atwgaggatg attacacgga gagagagaaa gaggtacagg gatggatcga ggaggtggct      1620
     aggtatgagg gtgaaagggg aagggaaatt caggtggggt atttgaaaat aaaaattcaa      1680
     agaatatggt acaattgggt ggaggaaaag gggggcctaa tagagagtgg gggaggaaaa      1740
     attcagacat ttcgtcaata gagggaaggg caaagaaaaa agggaccttc gaatgttatc      1800
     ctggaatata gcgggtatga agaaaattat cacaattaaa aaatacttgt acaattttga      1860
     tattatagcg ttacaggaaa catggctaga aaaaggtaat gaatcaggtt ggttagggag      1920
     attagacaaa agttatgagt ggacagcgtg tgcagctata agagaaaata aaaaaggaag      1980
     agcaaaagga ggtgtactag taggaatcaa gaagtctatt aaaaaagcgg aagttgggaa      2040
     atgggattat ggagtggtga tttcaggtgt ggatttaaga aacgataaaa aactgtgtat      2100
     aattgttgtg tataataatg ttaatattga tgtaatgata agcaaactga aagggatagt      2160
     ggaggaggga attggaaggg gtgagcaagt gataatagca ggtgatataa atgcgcgtat      2220
     aggggaatgg caaattaata gtgagggaga aagagaggaa agtagaaagt catgtgacaa      2280
     agtgacgaat agggaaggga aaaagttatt aaatatgtgt gaggagacgg gattgactat      2340
     aagaaacgga gcaactgaag gtgattgggg aggagagata acgtttgtgg gagatggagg      2400
     aagttcagtg cttgatctgg tattggagct tgaaagtgaa caaggtagtt tgataaaaga      2460
     actgaaaata ggtataaaaa tggaatcgga tcacctacca atagaggtca aacttcatgg      2520
     gggaggaggg agggaaaaag tggagacgaa agagaaaggg gaagaaacaa aaagattaaa      2580
     atgggatggt aagaaaaagg atcaatatag aaaagaaatg acaaataggg gaaaggactt      2640
     agaagttgag ggcgaaagta tgcaagaagg gtgggaggca ttggttggtg caatttggga      2700
     ggtgggagag agagtaggca tggtgaagaa gggcagaaga gagaactgtg aatggtcagt      2760
     agaatgggat gaggaggtaa aggctcagaa aaaaaaggtt tggggggctt taaagaagtg      2820
     gctggaaacc aaagatgaag gggacaaggc ggaactaaaa agggagagag gggcggtgag      2880
     ggagttaaga aaaagaaagc tggaagagga gagacwgaga aaatggaaat tagtggacga      2940
     aagcaggaaa atgacagaat tctgggaagc aatagctcag ttcagaccga ggaggaaaaa      3000
     taaagggggg gggggtataa aaggggagga atgggttacg cattttaaaa aaatcttggg      3060
     tgcagacaag ctgagcgatg caggggtgga gggggagagg gtggggwact ctcatgagga      3120
     atgggaggaa ctgaattcag agatatgcga acaggaggtg aggaaggcgt tgggaaaaat      3180
     gaaaaacaaa aaagcggcgg gggaggatgg gattacggcg gaatttttaa aggaacttcc      3240
     ggaaamctgg ctgaagaaat taacgggggt gttaaataga gtatttgaag aagcaagaat      3300
     gatcaaggga tgggagatag cgagaatttt cccgatttac aaagcggggg acgaaaatga      3360
     tgctaaaaac tatagagggg tatcattatt agatatggga tataaattgt taactaatat      3420
     attggcgaac agattgaggg ggagtctaga attaagggat accattgacg agagtcaagc      3480
     aggttttagg gaagggagaa gcacgaggga tcatatattc gtgttgaata gcattatcag      3540
     taatagtttg aaggaggata aggggaaggt ttttgtgtgt ttcgttgact tcaaaacggc      3600
     gtttgataca atagataggg gaatattaat cgaaaaaatg aggaaattag gaattaaggg      3660
     aaagttttta gaaatggtaa aaaacatata tagcaggacg ataaatgaaa ttattacaag      3720
     ggagggtata actgaaaaat ttgagacaaa gcaaggggtt aggcaagggt gtcctctgag      3780
     tccgtttctg tttaatatat atattaatga tatggaggaa aaatggaggg caaaaaatga      3840
     gggagggata gttattgggg ggaaaaaaat ctttagcttg aaattcgcgg atgatgtggc      3900
     tgtggtggcc agcagcaggg agggtttaca atgtatgctg aatgatctac aaaaatatga      3960
     ggaaaaaaat aggatggagg taaatacgta taaaacaaaa ataatgatat ttagaaaagg      4020
     gggtaggaaa aaagaaagcg aaaaatttac atttagagat gaggtaattc aagtggtcaa      4080
     cgagtataaa tatcttgggt tctggttttc gacaaggaat acattgagta cgcacgtcaa      4140
     caaaatcacc aataaggtta agaaagcgat aaacgcggtg tggggggtat ggaaaagagc      4200
     aaaattaggt agtttaaagg gaagacttta tctattagac acaatwgtga aggccggttg      4260
     tttatacgga gttgaaatat gggggtggaa aaggtgggag cagattgaga aagtgcaggg      4320
     aaagtttgta aagatggcat tggggctaaa tgaaaatact ccggcgtata tctggagaag      4380
     ggaagcaaat agaaaaagtc tggaaattga aacaaggagg agggcagggg actatttgat      4440
     aagcatagcg gagatgaaag acaatagatg gccaaaaatt tgcttgaagg aggagataag      4500
     gggacttggg aacgggaatg cttcaagttg gggaagaatg gtagcggaaa cttttaaaga      4560
     agtaggtgat ggagtggggc taattgggat gtttgataca ctggagaggt gggatttgaw      4620
     aaagagaatg acagatgggc taaaagtaaa agaagaccag gaagtgcagt tagattgggg      4680
     aaggattaag aggtcggagt actgtgatta ttataaacat attaaacaaa aattaggaac      4740
     ggaagattat tgggaaaaga aggtgtgggg ggataacgtt aaagaacaat ggacgaggct      4800
     cagatgcggg agtgtaggta aagcaggcaa gaagggattt ttagatagca catgcagggt      4860
     atgcaagaga agggaggaaa gtattcagca tatcttttat tgtcagatag cgaggaaaaa      4920
     aattaatgtg gagtggcctg gagcagcaga ggaagtagga ttaaaaggwt cggaggaggc      4980
     aattagacaa agattggtca gactattgga aggggatccg gttgaggtaa tttgcaagta      5040
     tgttaaagaa ttcgagaaag tggccagatc aagcgctgaa gataaatggg ggggggggta      5100
     attattttga ataaaggaga ggacgcgtta ggggtttagg aataatttta acgaataatg      5160
     agaatttggk gaagctagag gwtaakgtgc ttgtaaagaa gggaaattga tgtacatgag      5220
     gaagataaaa taatactagg tttaagagcg aaaattgtaa gcgcacggca tgtcgtgtga      5280
     ggggaagagg tatgtaaaaa gatgtaaatc tatacatgga aaataaataa atacaaatac      5340
     aatacaa                                                                5347
//
ID   RTEX-2_DT   repbase;    DNA;    INV; 4065 BP.
XX
AC   .
XX
DT   30-DEC-2011 (Rel. 17.08, Created)
DT   21-AUG-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_DT.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4065
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 12(8), 1721-1721 (2012).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           624..3890
FT                 /product="RTEX-2_DT_1p"
FT                 /translation="NSPRLRSYIEQTKFKKLNVPNVVPSLNVKIVSYNIAG
FT                 LANKTLFKQFFNYVTQFDIFLLFETFLTNDETSFANYFPNHLLHWIPAVRV
FT                 AARGRASGGSVYGIRKQLVNEGHITFTSKENAEVIEINTKDEKLHILPVYI
FT                 NCNNWQADFEKVYDFGLTAGCNNLMIIGDINARIGKAQATSEPTNIDLRTS
FT                 STIRKSKDEISDNKGAKIVEMCESLGLTVMNGRTISDQEGEYTFIRGAARS
FT                 TIDYCLIQGKWHDVVKDLVVGAQLLSDHMPIEVLLKLNLHEQVDSTQPKLN
FT                 RRLKWKDNHLRSYTDALVSGVQQIEDLSGSTLLVKLLNLIVDASRPMQQSL
FT                 NFSRKQPWFDVQCERARKHSFDCLKQLRRNEIMGTIYKTAVTNYKRLCKDK
FT                 EKQFWINMERQLQEVRDSKQFWEIVNKLNGNKQKKPIKVRSTDLADYFSSL
FT                 LSQIQNESEISYAKPLLFSDHMDSPFSPAEIESAVLTLKLNKAPGEDRITA
FT                 EFFKNAPLCFIQRLTDAYNEFYSHGIFPDCFKKSLISPIFKKGMETDPSNY
FT                 RGIIFAGALLKRMTTWVNRENILSEFQTGFRKGFSTVDSVFVLTSIAQTFL
FT                 QQKRKLYIFFVDFKAAFDTVNRNSLLYKLSQLGLSTKAILALSSIYEDNKA
FT                 SVWDGSELSKWFDTNSGVKQGCILSPLLFSLFVDDVVDFLPGGVTVNGTHV
FT                 KTLMYADDMCLLADSPETLRDMIASISEYCKVWNLTINTSKSKIMVVKGTG
FT                 GRHARNEEWQLNGIQLERVKSFKYLGVTLTTNMSFYTHIRDKLKDAKIAMN
FT                 ATWKNFLGRKNVKMSAKYSLFQATVKTIMCYAAEVWGNQRYEDAERVLTFF
FT                 VKKIFRLPQNTPDYAIFIETGLPSIFSYTLQQHFNYIDKVMHMPNSRLPKI
FT                 IAKSLCERKELPFSRWTDIATECSCLLDLEDASSWSRTHAEIIARYHDIER
FT                 ETFITKAKNSASRSLYRNLEHNLYEKNYFHDQHKGELIKHIFQARTETLPL
FT                 NGRPYSSNTSLECSLCNMREIEDVQHFIAVCPILREIRFTCFTKTTLCESD
FT                 LHSLLNGENWENLAFFITKASNYRKKIILEQF"
XX
SQ   Sequence 4065 BP; 1446 A; 841 C; 804 G; 973 T; 1 other;
     aactcgattg ccacaaaaat ggatacgatt cagcaaaatg tagaatgtct ctcaacaaag        60
     gtcgattcgc taacagagga aaacaaaata ttgcaggcag agattatcaa aatcaaaagc       120
     gacaacgaaa acaaacaagc aagacttcta caactagaag acgcaaataa aagaaaaaac       180
     ataattatcc gaggtctaaa atccgaaaaa aaaatccatt taatgctgtg tctgacctaa       240
     taaagaggaa attgttgata aaggaccgta tggagattag actcggtaaa gaagctgcac       300
     gacgccgacg gaaaaatggc tgttctggtt gaacttaaca cagtaagcgc agtacagacc       360
     atccttaagc acaccaaaaa cctgaaggga acgcgagtct caatcgaaca ggatctgaac       420
     atcgaaagga gacttaaaaa acgcgtgatg ctaggcctcc gccgggacat tctggcgagc       480
     cacaaaaact ttaaggtcac tgttagaaac gatcgcatgg ttatagaagg tagatggttc       540
     tactggaata aagacggcac gctgatgcgt ggagaagagt tagcacaaaa tgtcctggag       600
     aacatatatg gtacctcatt taaaatagcc ctagactacg aagttatatt gagcaaacta       660
     aattcaaaaa actaaatgtc cccaatgtag taccgtccct taatgttaaa attgtatcgt       720
     ataatatagc tggcttagca aataagacat tatttaaaca attctttaat tatgtaacac       780
     aattcgatat ttttctacta tttgaaactt ttctgaccaa cgacgaaacg agttttgcaa       840
     attactttcc taatcacttg ctgcattgga taccagcagt gagagtagca gcccgtggac       900
     gggccagcgg aggaagtgtt tacggaatcc gaaagcagct ggtgaacgaa ggacacatta       960
     cctttacgag caaggaaaac gcagaagtca tcgaaataaa cacgaaagac gaaaaactac      1020
     atatactccc agtatacatt aactgcaata actggcaagc agattttgaa aaggtgtacg      1080
     atttcggact gacagcaggt tgcaataacc taatgattat tggggatata aatgctcgca      1140
     tcggaaaagc acaagccaca tcagaaccca caaatataga cctcaggacc agcagcacta      1200
     ttcgtaaatc taaggacgaa atctcagaca acaaaggcgc aaaaattgtt gagatgtgcg      1260
     aatcactggg actgacggta atgaacggca ggacaatcag tgaccaagaa ggagaatata      1320
     cctttataag gggcgcagca aggtcgacta ttgactactg tctcatacaa ggaaagtggc      1380
     acgatgtggt gaaagatttg gtggtaggtg ctcaacttct ttctgatcat atgcccatcg      1440
     aagtactttt aaaactcaat ctacatgaac aagtcgatag tacccagcca aaactcaacc      1500
     gaaggttaaa gtggaaggac aaccacctcc gaagttacac agatgcatta gtatcaggag      1560
     tccaacaaat agaagatctg agtgggtcta cactgctagt caaactgctc aacttaatcg      1620
     tagatgcctc caggcccatg cagcagtcac taaactttag cagaaagcaa ccgtggttcg      1680
     acgtacaatg cgaaagggcc aggaaacact cttttgattg ccttaaacag ctacggcgaa      1740
     acgaaataat gggcaccatc tacaaaacgg cagtaacaaa ttacaaacgt ctatgcaaag      1800
     acaaagaaaa acagttctgg ataaatatgg agcgccaact acaagaagtt cgcgacagca      1860
     aacagttctg ggaaatcgtt aataaattaa acgggaacaa acagaaaaaa cccataaaag      1920
     taaggtcaac agatttggct gactatttta gtagcctact ctcccaaatt caaaatgaat      1980
     cagaaataag ctatgctaag cctctgcttt tctcagatca tatggactcc cctttcagcc      2040
     ctgcagaaat agaaagcgct gtcctaacac taaagctaaa caaagctcct ggtgaagaca      2100
     gaataactgc agaatttttc aaaaacgcgc cactttgctt tatacagcga cttaccgatg      2160
     cctacaacga attttacagt catggaattt tcccggattg cttcaaaaaa agtctgatca      2220
     gcccaatttt taaaaaaggt atggagaccg atcccagcaa ctaccgaggc ataatttttg      2280
     caggagcact gttaaaacgt atgacgacat gggtaaaccg agaaaacatt cttagtgaat      2340
     ttcagacagg ctttcgaaag ggtttctcta cagtcgacag tgttttcgtg ctgacatcaa      2400
     tcgcccaaac ctttctgcaa caaaaaagga agctgtacat tttctttgta gattttaaag      2460
     ccgcctttga tacagtgaac cgaaatagcc tactgtataa acttagccaa ctcggtctct      2520
     caacaaaagc catactagca ctgtccagta tctatgagga taacaaagca agtgtttggg      2580
     acggatcaga gctctcgaaa tggttcgata ccaacagtgg agttaaacaa ggctgcattc      2640
     tcagccctct cctcttctct ctcttcgtgg acgatgttgt ggatttttta ccaggtggag      2700
     tgactgtgaa tggaacccat gttaagaccc ttatgtatgc cgatgacatg tgccttctgg      2760
     ctgatagccc tgaaacgtta agggacatga ttgctagcat atccgagtac tgtaaagtat      2820
     ggaacctcac cataaataca agcaaatcaa agattatggt agttaagggt acaggtggcc      2880
     gtcacgctag gaacgaagaa tggcaactga acggaatcca gctggaacgt gtaaaatcat      2940
     tcaaatacct cggtgtaacg ctcaccacta atatgagttt ttatacccac ataagagata      3000
     agctcaagga tgcaaaaata gctatgaacg ccacctggaa aaacttttta ggcagaaaaa      3060
     acgttaaaat gagtgccaag tacagccttt ttcaggcgac agtgaaaaca attatgtgct      3120
     acgcagcaga ggtgtgggga aatcaaagat atgaagatgc ggaacgagta ctaacttttt      3180
     ttgtaaaaaa gatatttcga ctgccacaaa atactcccga ctatgcaatc tttattgaaa      3240
     caggactgcc tagtatattc tcctacacac ttcagcagca ctttaattac atcgataagg      3300
     ttatgcatat gccaaatagt agactaccaa aaataattgc taaatctctc tgtgaaagaa      3360
     aagaacttcc attctctaga tggacagata ttgcaaccga atgcagctgc ctccttgatc      3420
     tcgaggatgc aagttcgtgg agcaggactc atgccgaaat cattgccaga taccacgaca      3480
     tagaaagaga aacgtttata actaaggcca aaaacagcgc gtcgaggagt ttgtatagaa      3540
     atctkgagca taatttatat gaaaaaaact acttccacga tcaacataaa ggagaactca      3600
     taaaacatat cttccaagct agaaccgaga ctttacctct aaatggcagg ccatacagca      3660
     gcaacacatc actggaatgc agcctctgca acatgcgaga aatcgaggat gttcaacact      3720
     tcattgcagt ctgccctatt ctgagagaga ttcgttttac atgttttacg aaaaccaccc      3780
     tttgcgaatc ggatctccac agtcttctaa atggggaaaa ctgggagaat ctggcattct      3840
     tcattacaaa agccagtaat tacagaaaaa aaattatttt agaacaattt tagaatctaa      3900
     tttaactcaa ttaaccgact gacggcataa aagccattgt cgttgtaacc aatttttgtt      3960
     tgtttatttg ttttgatgta accttaaata tgtacagcca gctataaata agcaacaaag      4020
     aaaaacaaaa cacaaacaat aaacaaccta ctactactac tacta                      4065
//
ID   RTEX-2_FoCa repbase;    DNA;    INV; 4452 BP.
XX
AC   .
XX
DT   20-NOV-2019 (Rel. 24.12, Created)
DT   20-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4452
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2711-2711 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           195..959
FT                 /product="RTEX-2_FoCa_1p"
FT                 /translation="MRKGVNNFPQTPTSSSSKRSRCNDQLNSSFESSPSPQ
FT                 PKITKKPKVIQPTTNMGDSDLKDYILKVVTDSENKVITRLQNLEKLTSPLK
FT                 ENINQLKIRIDKLQTADRXKNVVINGIVEXVGEKWSDREKHVKELAKKLGL
FT                 AQIDYDCCYRMGTFNPDMARPRPLLLKMVRQRDAAQILSLRMKLSGTNIFI
FT                 DEDLAPEERKMRSQLREFARNMKKEKPDLLFRCYKKRVKITTEGATTWYTI
FT                 NDSNQIVEDGKQMT"
FT   CDS           963..4322
FT                 /product="RTEX-2_FoCa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="RYGRPLQLTQQSRISNFNIISWNIEGIRSKNILFYNE
FT                 LIEFNPTIFFLCETWHVDDYILNSKITDRYTIFDMKAVKSKIKGRASMGYY
FT                 IGIKNSIVNFSKVICMKNEYSVIQLNDNFRKVIIIFSYLPPNSNIEIEEIF
FT                 QAVDSAQISCIYMGDFNSRTGNHTSKSKDKVTNLRGTKLIKIIQENNLSLL
FT                 NGNGEHGTDGDFTFVNKNGSSVVDLCITSQSITDKKEFKVLSSEQSCHFPI
FT                 MLKLNAVPHFETLTKIVRVEWDVHKIGQFQDNFDNILENCESSNITIDKFQ
FT                 QGMLKGIDSCEMLKRRILGVKNITYGPRWFDKKCLLEKKLFNSSLRNFRKA
FT                 GNELEKDQLKLIFLQKKRTYINLKKAKKLKFFNAIQSSLCNAKNSSDFWKA
FT                 INYYRSKRNCNGNYDNDQTITPVAFHDHFSKIFDTNEQKDTLPNDELSIIN
FT                 DDTDGAFTSAELNIVIKKLSTGKAPGPDSIPNEAWKGLNDMQRLILLDSIN
FT                 LLWESQQIPDGWADIIISPIYKKGDKLDPKNYRPISLINTGLKLYTMLLTN
FT                 RLNEWCEKHEKISQFQAAYRKGMGCEDHIFMLNSILQHIIRNKRGKVYALL
FT                 VDLSSAFDRVKHDQLWKKLKLAGISDKMLNTIKDIYAKAKAKVRTRHGESN
FT                 FFPFKKAVLQGETLSPKLYTLHTNDLFDLMHNNIELSILRIGTAEIHLLCY
FT                 ADDIILLATNAIHLQEKINILRDYLIGNDMQINLSKTNFMIFRNGKPKRLE
FT                 PIIFWGNDKIACTESYKYLGVNFNSRMNYSDICNSFLLKAKQAENELFVLF
FT                 YKANITKLDTRLKLFDSLTKSVLLYCSHIWGLGVLDKLIMFQAKFLRKLFY
FT                 LPNHTPLWFLRLETNCYPIQLSVIKNAMKFVLKILQRPYSTALRQVLNNLI
FT                 KTSTFSKNKMKFNWYRDLNDYLKKYECENLFSFDPENVNLDTINILRNNIN
FT                 XIANTIRNRIVEEDVIRMQSSNSLXHFKHIKLHVQVEGFLNGNMSWNLVKL
FT                 GMQLRAMYPRFTIKNKSVILNGINIMYNKETXPLCNLCQSAIEDLYHFICI
FT                 CPCYNLIRKVLNSKLDQCLPTSRNDFVSFLGDLDETKLKCIKHYLTQATEV
FT                 REAYNNTDAILC"
XX
SQ   Sequence 4452 BP; 1686 A; 720 C; 774 G; 1261 T; 11 other;
     gtgagtctca gtctagcttc tgaagagaga acatggttct ctgacatgag tctcattcat        60
     tcaaatatct cgtctgtaaa atcgagaaat tattccattc aatcgagtcg tcgtctaatc       120
     tacatgcctt cctcaaattg aacaaactcg tctgtaaaat cgagttatac atcaaaatcc       180
     aaaatwacgt tcaaatgaga aaaggtgtaa ataattttcc gcaaacaccc acatcttcaa       240
     gtagtaaaag atctagatgt aatgaccaat taaactcttc gttcgaatcc tcaccttcgc       300
     cacaaccaaa aataaccaaa aagcctaaag ttattcaacc cacaaccaac atgggcgaca       360
     gtgacctaaa agattacatt ctaaaagtgg tcacagacag tgaaaataaa gttataaccc       420
     gactacaaaa tttggaaaag ctaacaagtc ckctgaaaga aaatattaac caactgaaaa       480
     taaggatcga caaattacag acagcagatc gacasaaaaa tgtkgttatt aacggaatag       540
     tggagammgt cggtgagaaa tggtcagatc gtgaaaaaca tgttaaagag ctagcaaaaa       600
     aactgggact cgcacaaatc gattatgatt gttgctaccg aatgggtact tttaacccag       660
     atatggccmg acctcgaccc cttttgctta agatggtgag acaacgcgac gcagcacaaa       720
     tcctgtccct tcgcatgaaa ctgagcggaa ccaatatttt tattgatgaa gatctggcac       780
     ccgaggaaag aaagatgcgt tcccaactga gagaatttgc gagaaacatg aagaaagaaa       840
     aaccggacct gctgttccga tgttacaaga aacgggtgaa aattacaacg gaaggagcta       900
     caacctggta cacaataaat gactctaatc aaattgtgga ggatggaaaa caaatgacgt       960
     gacgatacgg ccggcctcta caattaacac aacaatcaag gatcagtaac tttaatataa      1020
     tttcctggaa tatagaaggt ataaggtcta aaaatatctt attttataat gaattaatcg      1080
     agtttaaccc aacgatattc ttcctttgtg aaacatggca cgttgatgac tatatattaa      1140
     acagtaaaat tacagataga tatacaattt ttgatatgaa agctgtgaaa tcaaaaatca      1200
     aaggaagagc atcgatgggt tactacattg gtataaaaaa tagcatagtt aattttagta      1260
     aagttatatg tatgaagaat gaatatagcg tcatacagtt aaacgataat tttaggaaag      1320
     taatcattat ttttagctat ttacccccta atagtaacat cgaaatagaa gagatatttc      1380
     aggcagtaga ttcagcacag atttcttgca tatacatggg tgattttaat tcgagaacag      1440
     gaaatcatac aagtaaatcc aaggacaaag tcactaattt acgtggcacc aagcttatta      1500
     aaataataca ggaaaataat cttagtttgc tgaatggtaa cggagagcat ggtacagacg      1560
     gtgacttcac ctttgttaat aagaatggtt caagcgttgt agatttgtgt atcacctctc      1620
     aatcaataac agataagaaa gaattcaagg ttttgtccag cgagcagtct tgtcatttcc      1680
     ctatcatgct aaaattaaat gcagtaccac attttgagac tctcacaaaa atagtcaggg      1740
     tagaatggga tgtacataaa atcggacaat ttcaagacaa tttcgataac atcctggaaa      1800
     actgcgagag tagcaatatc acaattgaca aatttcaaca gggcatgctt aaaggaatag      1860
     attcatgtga aatgttgaag agaagaatat taggagtaaa aaatataacg tatggaccaa      1920
     gatggttcga taaaaaatgc ttgttagaga agaagctttt caatagtagt cttcgtaatt      1980
     ttcgtaaagc tgggaatgaa ttagaaaaag accaattaaa attgattttc ttacagaaga      2040
     agagaactta tatcaatctt aagaaggcga agaaattaaa atttttcaat gcaattcaaa      2100
     gttcactttg taacgctaaa aactcgtcgg acttttggaa agcgattaat tactataggt      2160
     caaagcggaa ctgtaatggt aattacgaca atgatcaaac aattactcct gtagcatttc      2220
     atgaccattt ttctaaaatt ttcgacacaa atgaacaaaa ggacacactt ccaaatgacg      2280
     aactcagtat aattaatgac gatacggacg gagctttcac atctgcagaa ctaaatattg      2340
     ttatcaagaa attaagtact ggaaaagcgc ccgggccgga tagtatccca aatgaagcat      2400
     ggaagggact taatgacatg caaagactta tattactaga tagcataaac ttattatggg      2460
     agagtcaaca aatcccagat ggatgggcgg atattattat ctcacccata tacaaaaaag      2520
     gcgataaact tgatccaaaa aattatcgac ctatttccct aataaacacc ggtttaaaat      2580
     tgtatactat gcttttgaca aatcgtttaa atgagtggtg tgagaaacat gaaaaaatat      2640
     cacaatttca ggctgcatac agaaagggaa tgggttgtga agatcatatt ttcatgttaa      2700
     actcaatctt gcaacatatt attagaaata aaaggggaaa ggtatatgca ttactggtgg      2760
     acctcagttc agcttttgac cgagtcaagc atgatcagct ctggaaaaag ttaaaattag      2820
     caggaattag tgacaaaatg ctgaatacca tcaaggacat ttatgccaaa gcgaaggcaa      2880
     aagtccgtac gcgccacgga gaaagcaatt tctttccctt taaaaaagct gtactwcaag      2940
     gagaaacgct cagtccaaaa ttgtatactt tgcatacaaa tgacctgttt gacctcatgc      3000
     ataataatat agagctgtct attttaagaa ttggaactgc tgaaattcat ttgctatgct      3060
     atgcggacga tatcattttg ttagcaacaa acgccattca cttgcaagaa aaaataaata      3120
     ttttgagaga ttatttaata ggaaatgata tgcaaattaa tctctcaaaa actaatttca      3180
     tgatttttag aaatggcaag cctaagagat tagaaccaat cattttttgg ggaaatgaca      3240
     agatcgcatg cacagaatca tacaaatact tgggagtcaa ctttaatagt aggatgaact      3300
     actccgacat ttgtaactct tttctattaa aagcaaaaca agctgaaaat gagctttttg      3360
     ttttatttta taaagccaat ataacaaaac ttgatacaag actgaaactg tttgattcat      3420
     taaccaagtc tgtactactc tactgttcac atatatgggg cttaggagtg ttagataaat      3480
     taattatgtt tcaagcaaaa tttcttcgaa agttatttta cttgcctaat catactcctc      3540
     tatggtttct gagattagaa actaactgct acccgataca attaagtgta attaaaaatg      3600
     ctatgaagtt tgtgctgaag atactgcaac gtccgtacag tactgcattg aggcaagtcc      3660
     tcaataatct aattaaaact agtacattct caaaaaataa aatgaaattt aattggtatc      3720
     gtgacttgaa tgattattta aaaaagtatg aatgtgaaaa cttattttca tttgatccgg      3780
     aaaatgtaaa tttagatacg ataaatattt taagaaacaa tataaatawa atagctaata      3840
     cgattagaaa tagaatagta gaagaagatg taattagaat gcaaagctca aactctttat      3900
     stcactttaa acacattaaa ttgcatgtcc aggttgaagg tttcttaaat ggaaatatgt      3960
     catggaattt agttaagttg ggcatgcaat taagagcaat gtaccccaga tttacaatta      4020
     aaaacaaatc tgtaatatta aatggaatta atattatgta taacaaagaa acaamccctc      4080
     tatgtaacct atgccagtct gcaattgaag acctatatca tttcatatgt atttgcccat      4140
     gctacaattt aatccgcaaa gtacttaata gcaaacttga ccaatgtctt cctacaagta      4200
     gaaatgattt tgtaagtttt cttggtgatt tagatgagac taaattaaaa tgtattaagc      4260
     attatttgac tcaagctact gaagtgagag aggcctacaa taatacggat gcaatattat      4320
     gctaatattt aatacttaaa ctaggctaaa aaatatcgaa atagtaatat ctcaatatat      4380
     ttaaataaat gtatgaaact tctttatata tgattgtaaa ggccgtggcc acatcaatcg      4440
     agcactaata aa                                                          4452
//
ID   RTEX-2_PBa  repbase;    DNA;    INV; 4777 BP.
XX
AC   .
XX
DT   16-MAY-2012 (Rel. 19.03, Created)
DT   16-MAY-2012 (Rel. 19.03, Last updated, Version 1)
XX
DE   non-LTR retrotransposon from the Pogonomyrmex barbatus genome.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4777
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the Pogonomyrmex barbatus
RT   genome.";
RL   Repbase Reports 14(3), 758-758 (2014).
XX
DR   [2] (Consensus)
XX
CC   Elements are ~85% identical to the consensus. incomplete
CC   sequences.
XX
SQ   Sequence 4777 BP; 1449 A; 357 C; 2227 G; 744 T; 0 other;
     gacttccgtt tccggagcgg gtgcgttagt agcgaagtta cagagttgca gtgctgtgtg        60
     aggtggagtg tgagagagag gtgtggatag gtggtggagg tgtgcgaggt gagaaagaga       120
     gaaggatagg ggagcgtgga gagtgaggga aggagaaggg gaacagaagg gcgggagagt       180
     ggagtgggca aagtcggagg tagcgcggag aggttaggcg gctggccggg gaaggaggga       240
     agaggggtaa ggggtagggt gaaacggcgg gaagaggcag acgaagattg gccagggatt       300
     aggtggttag ggagagagcc tagttggaca gcatacggcg cgacagaatt aaggcgcgtg       360
     cgcaagagtg acgggccata ggctaagaat agagaggaaa cggagtagta aaagaggtag       420
     aggattggga cgagggagag tggggcagct taggagagga gagaacaatg gaaagggagg       480
     cgagggatgg ggattcgagg gaggtggggc gaaggggaaa gaagcaagag ggagaagaga       540
     agggaaggga aaggacgaac agtgtggggg tgtgggaatt gttgaagagg aaaagagagc       600
     tggaagagga agcagcaggt gggatagaga agggagcgaa ggaggaggaa gaaagctgtt       660
     tccagaggag taagataact ccgagatccc cggtgagggt acaagaggga ggggagaggg       720
     gaaaaggata tcatgattgc tctggagaga tggatggaga actttaaagg aaagtgggaa       780
     aggatggagg agagcatagg gggtattaga agggagctgg aagagatgag aaggaggagg       840
     aagagtggag gtcggaaagg gagagattag aaaagagaat tggggagctg gaagagggga       900
     aagagggaag ggaaaggaga ggtggagaaa aggcggaggg ggcgggaggc ggggggagaa       960
     ggggacggcg agttggagga gagggtgagg ggtctggaga gggagaggga gaaaagagaa      1020
     agggctgaga gaaggaataa catgtggtga agggctttaa ggaagtagag ggggatgcaa      1080
     ggaaaggggt ggaggaggtg ttcaggaaga taggggcgaa ggcgagggtg gaagagttaa      1140
     gagtagtgag aacggggaag gaggagagag gggggatggc cattgtgagg ttgagggaag      1200
     gggataaaag ggagataatg gagaaaaaga gggagctaaa gggaggaagg gtctggatag      1260
     aggacgatct gacgtgggag gagagaaggt cgagatggaa atttagggag gcagtgatgg      1320
     cggaggagaa gaggggagcg agggtatggg tggggagtgg taaggtgatg aaggagaatg      1380
     gaattgggac gatagggaag aggttttgag ggacaggatg ggaaggagaa gagatggaag      1440
     ggaaggtggg aggtcggggg aaggaggggg ggaaaaggga ggagggcagc ttaaggcgaa      1500
     gagttgggcg gggggagagg tacggaggag aggaaggggt taaaagagat gggggaatgg      1560
     aaggaaaggg agggagatgg ttggagaaag ggaggaatcg aggagaggaa ggggagagga      1620
     gggaaagggg cattgcagag tggcgttttg gaacgtggcg ggacttggga agaaggacaa      1680
     ggacttttgg agagggatcg aagaatggga tgtggttgta atgtccgaga cgtgggtaga      1740
     ggaaaaggga tgggggaagg tgagggggaa gctaccgggg ggatttattt gggaagtgca      1800
     attggccaaa aggaggaaca aaaagggaag ggcgataggg ggaatggtga tgggggtgag      1860
     gaggggaata gagacggtga aggagggcaa ggtggaggtg gagggtctga tgacgagggt      1920
     gataaagtta aggggaggag tggagaattg ttggggtata cgtgaatggg gatctggagg      1980
     agaagtggga ggtcataagg ggtgggcgga agatggcggg acaggatcga gaacgatagt      2040
     tggggggatt ttaacgtgag aacagggaag ctggggggct ggtgggaggg gaggtaggcg      2100
     aggggaggag atcaatggat ggcaaagtga gtagggaggg taggtggttg gtaggcaggt      2160
     tggaggaggt gggatggttt attttaaacg gatgcgggaa gggagatggg gatggagcat      2220
     ggacctactc aggagggcgg ggagagtcgg ttctggatta cgtagtaggg gacgggagat      2280
     gtgggacagg atagagaaag taagagtgga ggagagagtc gattctgatc acttcccggt      2340
     cgtgatatgg atcaaagggg aggaaggagg gatcagaaag agaaagggtg gagaggggtc      2400
     ggaaggagat ggagttggac agaggagggg aaagggtttt tagagagagg atggagaggg      2460
     tatgggagga gaagggggaa gaaagggaga tgagttggga gaaattgaag gaggggatac      2520
     aagggataat gagagagggg caagggctag aaaaaggggg aaaggggaaa aggggttggt      2580
     gggatgggga atgtagggag cttaagaaaa aggtgaggat gaagcttaga agatggaaga      2640
     aagggacgga ggggggagac agatataaag agtgcagaag ggagtataac aggctgtgtg      2700
     agagaaagag gaaggaggag agcgagagat gattggaagt ggcaaagcag gcgaggacgg      2760
     agggacaggt ttgggaggtg atgaataggg aaaggaggaa ggggaggggg taaatgaagg      2820
     gatagagctg gaggagtggg tagggtattt taaaagttta ttagggaggg aaggtagagt      2880
     agtgagagga gaaagggggg ataggaggga aggggacaac gagcaggaca tcgacgaggg      2940
     ggaggtggtg agggcggtgg gaaagctgaa agagggcaag gcaatgggag gggatggcat      3000
     tccgggagag gtatggaagt tcggtggaga gaggctgacg gattgggtat gggagcagtg      3060
     taataaggta tggaaagggt tggagtggat tgaggattgg agcgatggga tagtggtgcc      3120
     gataaggaaa aaaggggaag ggaagagggt ggaggactac agggggtgac cttggccccg      3180
     gccatgtaca aggtatacgc cgcgatatta ggggagaggc tggagaggga ggtcgaagag      3240
     aagaatctgg tgccacagaa tcaaacgggc ttcaggaaag ggatgggagc gatagataat      3300
     gtctatgcac ttaattacct ggtgaacagg caattggata aagataaagg gggaatggtg      3360
     gcgtttttcg tagacctgaa agccgcgttt gattctgtgg acagggagat attgggtagg      3420
     gagatgagaa agagaggggt aagggagggt ttagtgagaa ggtgcgagga catcttcagg      3480
     gagacaagga atagggtgag ggtgggaagg gagatgagcg acgcgttctg gacggcaaga      3540
     ggggtgaagc agggttgccc gctgagtccg ggattattta atttattgat cgcggatgtg      3600
     gaggagcata tgaagagggg agggtgggga ggggtaagat taatgggagg gagggtgtat      3660
     acgctggctt atgcggatga tttggtactg ctgtcggagg aggaggaggg gatgaggtcg      3720
     atgatggcga ggctggaggg gtatctaagg gaaaagggct tgtcgatgaa tgtggggaaa      3780
     tcgaaaatct tgaggttcag gaagggaggg ggagaagaaa gagagtaaga tggtactggg      3840
     agggaagggc ggtggaggag gtaaagacct ttaaatattt ggggtacatg ttccagagaa      3900
     acggagggca agaagagcag ataaaagaca ggataaaaag gggggctgcg gtggtgggac      3960
     aggtgtgggg gataggaaag aggagattcg gaggggattg ggggaaaagg ctgtggctgt      4020
     ttgatgcgct ggtgtggaca gtggtatcat atggggtaga gatttggggt tggagagaga      4080
     gggaagagat agaaaggttg caggagaggt ttttgaggtg gttattgggg gtgggatgga      4140
     agacgccggg gtatgttaag agaagagttg caaagggata aattaagagt aagggcagga      4200
     aggagggcat ggggatttga ggagaggttg gcgggaggga agggaagcga ggtggcgaga      4260
     aaatgttggg aggaaatgag gggaagggta gtaaaggggg cgagtctgac ggaatgggag      4320
     agggagagaa gggaattttt tcaggaaaga gggatggagc tggacgaagt ggagggagcg      4380
     agggaggagg ggctgttaga ttttagtaaa ttggaggaga gggataggat gctgcaaagg      4440
     gaggagagat ggcggggcct ctaagtataa taaatggtac gggagggtta agggaagcgg      4500
     cataccggga tacttaaaaa aggggtgggc ggaaaatcgg tggacgagaa tagcaaagtt      4560
     taggctggga gagggagtga gggagggaat ttactgggga aaggaggagg acagggtgtg      4620
     tagggtgtgt ggcgtgaaag aggagacgtg ggagcatgtt tgggaggagt gtgggaggtg      4680
     gggaggggag gaaagctggc aggaggaagt tttagggggg gggaaagggg aagaggaaga      4740
     tagaatggtt tagaggaaag gaggagaggg gagagga                               4777
//
ID   RTEX-2_RPr  repbase;    DNA;    INV; 2790 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2790
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3484-3484 (2015).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. Low-copy. 5% end uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           196..2742
FT                 /product="RTEX-2_RPr_1p"
FT                 /translation="MVSSFRVDHQLYSDHMPIITTLLIHDKQQIYNDNTLP
FT                 LLPKLNWSKQNLQKYQQSISFYLNHIVYKYDTLDAEVNYLNDIIRSSAIGN
FT                 NNKKGPKVWKADWFDVECDRARRKSFKQLRLFRRTNEVEDKHLYLKYNFDF
FT                 KRLCKNKKQKYYVDCARRLYNVKSSKEFWQQVRAFQKRKPWVLGNVSPEQL
FT                 FEYFCSLHNSSVTARLVFDVSHRVDAFLDKPFSFDELELVLSKSKENKAPG
FT                 TDRICYEFYKFAPIVFLNRLLLLFNKIFETSKIPASFKESIIFPLYKKGNK
FT                 NSASSYRGISFINVICKLYSGLILHRLNNWLESNNILKESQAGFRSNYSTI
FT                 DNLFNLTNIIKIKLSKKKQKVYAFFVDLSSAFDSIDRFSLIYKLHRTGLST
FT                 KIVTSIKNLLSGTTASVMCRNGLSPNFGTNIGVKQGCLLSPTLFSIFINDL
FT                 EECLGGGVVISDNCKIKLLAYADDVVLLASNPISLQLMINEMESYCYRWKL
FT                 KINLQKSKIMIFRNGGRPANNEVWYLGTQKVEVVNEFKYLGIILTPTLSYT
FT                 KHFQNKLSKAKMSLNTIWHHFMDNTSIPFSTKIRIFNSVNRSMMCYGAQVW
FT                 GWQRFVEVERLFYFFIKKLFKSPKTTPSAFIHTETGIDPIYLYTFEMHFKY
FT                 LVRVLQLPDNRYPKILCHEIIKSKILWFLEIKNLITKFNLPNDLNWQNIGN
FT                 FTLWEANFNILIKSLQADMNNTFQLKLFNSGSHPLYKNLQYNLGDNPYLSD
FT                 SHPFHLIRMIFKVRGDLLPLNYKFYKNRDLDCLMCASGEVEDLFHFLAVCP
FT                 ALSNMREQWFGSRTLPAQHVAAYLNGKDWEALAKYCLAALSRRALLT"
XX
SQ   Sequence 2790 BP; 928 A; 454 C; 491 G; 916 T; 1 other;
     gaatccagaa atagagtatc caaagataaa tttattaata gtaacggtta taaacttttg        60
     gattttttcg atagcttcag tcttatagtc cttaacggta gatttgaaaa tgatttggaa       120
     ggcgagttca cctacattag cgaggttggc tgttcggtaa ttgactattc ctgcattagt       180
     attaaaggta ttgacatggt aagtagtttt agagtagatc atcagcttta ttcagaccat       240
     atgccaatta ttaccactct gttaattcat gataaacaac aaatttacaa cgataacact       300
     ttgcctcttt taccaaaatt aaactggtcc aagcaaaatt tacaaaaata tcaacaaagt       360
     atatcttttt atttgaacca tattgtttac aagtacgata ctctagatgc ggaagttaac       420
     tatttaaatg atataatcag gagttcagcg ataggtaaca ataataagaa aggccctaaa       480
     gtgtggaaag cagactggtt cgatgtagaa tgtgaccgtg ctagaaggaa atcttttaag       540
     cagcttagac tgtttaggag aacgaatgag gtagaagata aacacttgta tttaaaatat       600
     aattttgatt ttaaacgttt atgcaaaaat aagaaacaga aatactatgt agattgtgct       660
     cgcagacttt ataatgttaa aagcagtaag gaattttggc agcaagttag agcttttcaa       720
     aaacgcaaac cctgggtgtt aggaaatgta tctccggaac aattgtttga gtatttttgt       780
     agcctacaca attcatcagt aactgctaga ttggtatttg atgtgtccca ccgagtcgat       840
     gcctttttag acaaaccatt ctcgtttgat gaattagaac ttgttctaag taagagtaaa       900
     gagaataagg cccctgggac agacagaatt tgctacgaat tttacaaatt tgctccgata       960
     gttttcttaa ataggcttct attacttttt aataaaatat tcgaaactag taagataccg      1020
     gcctctttta aggaatcaat tatttttccc ttatataaaa aaggaaataa aaattcagcg      1080
     tctagttata ggggtatatc ttttattaat gttatctgta aactgtattc cgggttaatc      1140
     cttcatagat taaataactg gttggagagt aataatattc taaaggaatc acaggcagga      1200
     tttaggtcaa attattcgac catagataat ttatttaact taaccaacat tattaaaata      1260
     aaattaagca aaaagaaaca aaaggtatac gccttttttg tggacctgtc gtcggctttc      1320
     gacagtattg acaggtttag tcttatctat aaattacata gaactggtct ctctacaaaa      1380
     attgtgacta gtattaagaa tctgttatcg ggaaccactg cctctgttat gtgcagaaat      1440
     gggctctcac ctaattttgg tacaaatatt ggggtgaaac aaggatgcct ccttagccct      1500
     accttatttt ctatattcat taacgacttg gaggagtgcc taggaggagg ggtggtaata      1560
     agtgataatt gcaagataaa actactggct tatgccgatg acgtagttct gttagcctcc      1620
     aatccaatct ccctccagtt aatgataaat gaaatggagt cttattgtta tcgttggaaa      1680
     ttaaaaatca atttacaaaa atctaaaatt atgattttcc gcaatggtgg ccgtccagcc      1740
     aataatgagg tatggtattt aggtacacag aaagtagagg tcgtcaatga attcaaatac      1800
     ctcggtataa tacttacccc tactctatcg tatactaaac attttcaaaa caaattgtct      1860
     aaggccaaaa tgagcttaaa tacaatttgg catcatttta tggataacac tagcattcct      1920
     ttttctacaa aaattcgcat ttttaattct gtaaacagat ctatgatgtg ctacggtgcc      1980
     caggtgtggg gttggcaaag atttgtcgaa gtggaaagac ttttttattt ttttattaaa      2040
     aaattattta aatccccaaa aactactcca tcagctttta ttcatactga aactggaatt      2100
     gaccccattt atctttacac atttgaaatg cactttaaat acttagttag agttctgcag      2160
     ctccctgata acagataccc taaaatttta tgtcatgaaa ttataaaaag taaaatcctt      2220
     tggtttttgg aaattaagaa tcttataaca aaatttaacc ttccaaatga cttaaattgg      2280
     caaaatattg gaaattttac attatgggaa gccaacttca atattttaat aaaatccctg      2340
     caagccgaca tgaataatac tttccagttg aaattattta attctggtag ccatccgcta      2400
     tataaaaatt tgcaatacaa ccttggggat aatccatatc tatctgatag ccacccgttt      2460
     catttaatca gaatgatttt caaagttaga ggggatcttt tgcctctaaa ttataaattt      2520
     tataagaata gagatcttga ctgtttaatg tgtgccagtg gwgaggttga ggatctgttc      2580
     cactttctag cggtttgccc tgcactgagc aacatgcgcg aacaatggtt cggatcgcga      2640
     acccttcccg ctcagcacgt tgcggcttac ttgaacggaa aggattggga ggcgttggcc      2700
     aaatattgcc ttgctgcctt gtctcgccgt gctttattaa catagtttat gtttactaaa      2760
     atttacttat ttattaaaat atataatata                                       2790
//
ID   RTEX-3_DTa  repbase;    DNA;    INV; 4738 BP.
XX
AC   .
XX
DT   22-JUL-2021 (Rel. 26.10, Created)
DT   22-JUL-2021 (Rel. 26.10, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from the Drosophila takahashii genome:
DE   consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-4738
RA   Bao W.;
RT   "Non-LTR retrotransposons from the Drosophila takahashii
RT   genome.";
RL   Repbase Reports 21(10), 5922-5922 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(399..1214,1196..1813,1813..2892,2820..3350,
FT                 3209..4480)
FT                 /product="RTEX-3_DTa_1p"
FT                 /translation="LFQMPGAGGMMRTPPKSKEEAAITPQIANRGRTECSP
FT                 EPTKSDLMEVLKNVATKSDVGELKEQLGGVSEKIEALQAENHQLKAENEQL
FT                 KRDRITDKKELNRLVELSRSKNIIIKGLNKEKATKTGVQQLLRDKLEIPQV
FT                 EVQSTRIIYERSNNVGVIAELDSASKVNESLRNGKKLAGTEIFVEKDLSIE
FT                 KQEQKLVLLQLKRHLAAVDNSIKVMVRGDEINIQGKWMHYNPEKTLIHXSQ
FT                 PADLNAMYGNKISSDDISYTYLLSKARLPKNSKTAKKLEKNKKQYSSQSPN
FT                 PINKISLNIVAYNIAGLANKRLFSKFFSFINSFEIFILLETFAENSFHQYE
FT                 TYFPNHRLHWIPATRRFARGRASGGQVFGISKQMDPGVNCSFTTQQGVTTI
FT                 SLSCAQNKLSILPVYLNCNNWKQDFEDLYNWLLDYNGNNVMIVGDLNARIG
FT                 EHQIETESGFLTASLINETRRAWDKTADGNGLSLIELCETTNMAILNGRMS
FT                 GDTDGNFTFVRGQACSTIDYCAIRGAWHNLIKRFSVLEETFLDHMPLCVEV
FT                 EVATNSETQPQLNGDHQLPKLRWVESKAERYRNRLDRCLRRRSENNECTIN
FT                 EVTRVIQESAQAMQSERRQNFRQPWFDSQCERTRKHAFKQLQNIRKNANDE
FT                 TKLAYQTANTAYKSLCKAKEAEYYQRLEMEIGEIRDSKGFWEMAKKLNGLN
FT                 TRQGGIKVTALSLGVHFKGLLQLSSRTQINYALPYVEINELDEPIRLSEVQ
FT                 DAVRRSKVXKAPGFDRVPAEFYKNASTELISLLTLVYNRIFEDRMAPESFK
FT                 RNIIFPIFKKGDPKAAANYRGISFLAVSKKSLRRYYPKSCCQLQRNILPRS
FT                 VQKIFTSILLERISKYVERNQILSEYQAGFRKGYSIVDSIFTLTSTAAEFY
FT                 KKKKKMYLFFIDFKAAFDTIDRRALILKLSNRGISTKMLEVIQNLYSENRT
FT                 AVWDGKTLSEWFETNTELXKDVCLVPYFSPYSLMTSQKAYREESYLQTIRL
FT                 KCSCTQTTWDKHRVKXGCLLSPLLFSLFVDDITEGLPGGVLFADHQIKVLM
FT                 YADDMVMLAGSPETLQNMINYTHAYCTNWNLQINLDKSKVMCIKDPRGRLA
FT                 RDERWTLNGTEIEVVKEYKYLGTVLSSNMSFKKHLQQKLKDAKVALNSTWS
FT                 SFLAKQEVKSSIKYKLFEATAKAIMCNSAEVWGHTYSEEVEKLLTFFLKRL
FT                 FRLPSNTPNYAITLETGLAPLFCSTLNSHFSYIRKVMSFNDRRLPKIVASH
FT                 MLQSKSQCFQEWCHLASSVNVQFDWDDQTTWKDSHQNILEAINIQVRQRAE
FT                 EQARQSESREHYRTLEYNLGTKNYFSDHFKIYAISTIFKARVEILRLNYAP
FT                 HRRAQSEECTLCNRREREDSFHFIATCPILRRLYWEKDELGYVEFQNILNG
FT                 ENWPNLIGFLSEAQRYRNQLFDESI"
XX
SQ   Sequence 4738 BP; 1656 A; 987 C; 1047 G; 1044 T; 4 other;
     agagtgcgga cgtgtatgag tcgggctccg gaaatttatc atcttactag cgttgcaagg        60
     ctaaacaaac ccgaaactgt ggcacaatcc gcggcccagg cgaagacaca ccaaacaggc       120
     accacggcat caacacagcc gcccgagatc tccaggaaaa cacgtcggct tgtaagcatc       180
     attttggcca ctttccacta tttttttttg cgctagggtg caggaaaacc aagaaaaatt       240
     atccgagcga aaaaaacgtg ggagagaaag cgcgaaaaac tagagaagtc tggatcagct       300
     gatgagctta caggttgact acgatagtta gaacgacgag tgtcatagca ttcagctttt       360
     aaatttactc gtagctataa actaggcgcg ataaataact ttttcaaatg cctggagcag       420
     gaggaatgat gcgaacccca ccaaaatcta aggaggaggc tgcgatcacc cctcagatag       480
     ctaatagagg aagaaccgag tgttcaccag aaccaacgaa gagcgacttg atggaagttc       540
     ttaaaaacgt ggcaacgaaa agcgatgttg gagaactgaa ggaacagctg ggaggggttt       600
     cggagaaaat agaagctttg caggcagaaa accaccaatt aaaagccgag aacgagcaac       660
     tgaaacgcga cagaatcacg gacaaaaagg agcttaacag gctggttgaa ctaagtcgca       720
     gcaaaaatat aataataaag ggacttaaca aagagaaagc cacaaaaact ggagttcagc       780
     agttactgcg agacaaactg gagatcccac aggttgaggt gcaaagcacg cggataattt       840
     acgagaggtc aaacaatgtt ggcgtaatag cggagctgga ctccgcatcc aaggtcaacg       900
     aatccttacg taacgggaaa aaactagcag gaactgaaat attcgtcgaa aaagatctca       960
     gcattgaaaa gcaggaacaa aaactagtgc tactccagct aaaacgccat cttgcagcgg      1020
     ttgacaacag catcaaagta atggtcaggg gagatgaaat taacatwcaa ggcaagtgga      1080
     tgcactataa ccctgaaaaa acactaatcc acwaaagtca accagccgat ttaaatgcga      1140
     tgtatggaaa taagataagc tcagacgaca taagctacac ataccttctc tctaaagcaa      1200
     gactgccaaa aaactagaaa aaaacaaaaa acagtacagc agccaaagcc ctaacccgat      1260
     aaataaaatt agtttaaata tagtagcata caatatagct ggactagcaa ataaacgtct      1320
     ttttagtaaa ttcttctctt ttataaactc ttttgaaata ttcatattat tggaaacctt      1380
     cgcagaaaac agttttcacc agtatgaaac gtatttccca aaccacaggc tacattggat      1440
     tcccgcaacc agaagatttg ctagagggcg ggcgagtgga ggacaggttt ttgggataag      1500
     caaacagatg gaccctggag taaactgcag ctttacaaca caacaaggcg taaccacaat      1560
     atccttgtcc tgcgcccaaa acaaactttc catactgccc gtatacctga actgcaacaa      1620
     ctggaagcaa gattttgagg acctctacaa ttggctactg gactacaatg gaaacaacgt      1680
     catgatagtg ggcgacttga atgcgaggat aggagagcat cagatcgaaa cggagagtgg      1740
     attcttaacg gcgagcttaa tcaacgagac tcgaagagcc tgggacaaaa cagcggatgg      1800
     aaatggtctt agctaataga actatgcgaa accacaaata tggcaattct aaacggcaga      1860
     atgagtggag atacggatgg caactttact ttcgtaagag gtcaagcctg ctccactata      1920
     gactattgtg ctataagagg agcctggcac aatcttatta aacgcttttc ggttttagaa      1980
     gaaactttct tagatcatat gccgctatgt gtagaagtag aagttgcgac aaactcagaa      2040
     acgcagcccc aattgaacgg ggaccatcag ctgcccaagc taagatgggt ggaatcaaag      2100
     gcggaaaggt acagaaacag gctggataga tgtctgaggc gaagaagcga aaacaacgaa      2160
     tgcacaataa acgaagtcac acgggtcatc caagaatctg cacaagccat gcaaagtgag      2220
     cggcgtcaaa actttaggca gccatggttt gatagtcaat gtgagcgcac acgaaagcac      2280
     gcttttaaac agctccagaa tattaggaag aacgccaacg atgaaaccaa acttgcctac      2340
     caaacagcca atacagcgta taagtcacta tgcaaagcaa aagaagcgga gtactaccag      2400
     cgtctggaga tggaaattgg tgaaataaga gacagtaaag gtttttggga aatggcaaag      2460
     aaattaaatg gattgaatac cagacaggga ggaatcaagg taaccgcatt gtcgcttgga      2520
     gtacacttta aaggactact tcagctgtca agcagaacgc agattaacta cgcactgcca      2580
     tacgtggaaa taaatgagct cgacgaaccg atacgactca gcgaagtcca agatgcagtc      2640
     cgaaggagca aagtaaasaa ggcccccggt tttgatcgag ttccggccga gttctacaaa      2700
     aacgcctcaa cggagctaat ttccctatta acgctggtgt ataatcgcat ttttgaagac      2760
     cgtatggcac cagagagttt caagcgcaac ataattttcc cgatctttaa gaaaggtgac      2820
     ccaaaagctg ctgccaacta cagaggaata tccttcctcg cagtgtccaa aaaatcttta      2880
     cgtcgatact attagagaga atatccaagt acgtagagcg aaaccaaatt ctaagcgagt      2940
     accaagccgg tttcaggaaa ggctactcga tagtagatag catttttaca ttaacatcta      3000
     ctgcagcgga gttctataaa aaaaaaaaaa aaatgtacct gttttttatt gattttaaag      3060
     cagctttcga cacgatcgac aggagggcat taatcctaaa gctgagtaac cgagggatct      3120
     caaccaaaat gctcgaagta attcaaaatc tttattcaga gaaccgcaca gccgtatggg      3180
     atggaaaaac cctctctgaa tggtttgaga caaacaccga gttaagsaag gatgtctgct      3240
     tagtccctta cttttctcct tattcgttga tgacatcaca gaaggcctac cgggaggagt      3300
     cttatttgca gaccatcaga ttaaagtgct catgtacgca gacgacatgg tgatgctggc      3360
     aggcagtccc gaaacgctgc aaaatatgat caattacacc cacgcctact gtaccaactg      3420
     gaatctccaa attaacctgg acaagtcaaa agttatgtgc atcaaagatc ccaggggacg      3480
     cctggccaga gatgaaagat ggacgttgaa tggtaccgaa attgaagtgg taaaggagta      3540
     caaatatctg ggaacggtct tatcatcaaa catgagcttc aaaaaacatc tgcaacaaaa      3600
     gctaaaggat gccaaagttg cactgaacag tacttggagt tctttcctgg caaagcaaga      3660
     agtcaagagt agcattaaat acaaattatt cgaagccaca gcaaaagcca taatgtgtaa      3720
     ttctgccgaa gtctggggac acacgtattc cgaagaagta gaaaaattgc taactttttt      3780
     cttaaaaaga ctctttaggt tgccatcgaa cacaccaaat tacgcaatta cgctagaaac      3840
     aggactagcc cccctctttt gcagtacact gaatagtcac ttcagctaca tcagaaaagt      3900
     gatgtccttt aacgacagga ggcttccaaa aattgtggca tcacacatgc tacaaagcaa      3960
     atcgcagtgc tttcaagagt ggtgtcatct agcaagcagt gttaacgtgc aattcgactg      4020
     ggacgatcag accacttgga aggacagtca ccagaacata ctcgaggcga taaacatcca      4080
     agtgaggcaa cgagcagaag aacaagcaag gcaaagtgag agccgagaac actacagaac      4140
     gcttgagtac aatctaggca cgaaaaacta ttttagcgac cactttaaaa tctatgctat      4200
     ttccacgatc ttcaaagcta gagtggagat actacgacta aactacgcgc cacatagacg      4260
     agcccaatcg gaggaatgca cactctgtaa ccgaagagaa cgggaagact ccttccactt      4320
     catagcaaca tgccctattt tacgccgatt atactgggaa aaagacgagt taggctacgt      4380
     ggaattccaa aacatactaa atggagaaaa ttggccgaat ctaataggct tcctaagcga      4440
     ggcgcaaaga tatagaaatc aactctttga tgaatcgata taggaggcac ctttgcatgt      4500
     atgggcgctt ttcattcgaa cgatctggta tctggggaag acccgggaag ccaggtgtat      4560
     tagaatggga agtcatctgt atatgcacgg tgatcagctg acggttttaa aaccatgctg      4620
     attaaaatat tatatctttt ttttaataaa tgtctttatg ttagaaagta atttttatat      4680
     atgtattatg tcaaccccca atatttttta ttaaataaaa gatctactac tactacta        4738
//
ID   RTEX-3_RPr  repbase;    DNA;    INV; 2450 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 20.10, Created)
DT   22-MAR-2011 (Rel. 20.10, Last updated, Version -1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-3_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-2450
RA   Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3485-3485 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. Low-copy. 5' end uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           118..2301
FT                 /product="RTEX-3_RPr_1p"
FT                 /translation="MKDRLLYLNYNVMYKTLCRDKRKQYYLDCARQLCETK
FT                 NSKEFWQKIKLFKHENSWTVGNVCAEDWLWHFKNLHNPSLITGRFSYAEPY
FT                 FINDHLDRPFLLEELDIILSNSKENKAPGTDRIGYEFYKYAPKDFVIRLLK
FT                 LFNKLFETGNIPASFKESIIFPLYKKGNKDQAASYRGISFINAISKLFSGL
FT                 ILNRLTSWVENNNILHEWQAGFRSNYSTIDNIFNLTNLIKLKLSMKKQKVY
FT                 VFFVDLSAAFDNIDRFSLIYKLHSLGISSKIVKIIKNLLTDTTASVMCKNG
FT                 LSSSFFTERGVKQGCLLSPCLFSLFVNDLESYLGGGVVVNSKCKIKMLAYA
FT                 DDIALLASDPVSLQLMINSLDEYCQLWSLKINLEKSKVMVFRNGGRPAKNE
FT                 KWFLGLNRIEVVSEYKYLGIVLTPTLSMSKHLKSKSSKAKLSVNLIWSQFI
FT                 DNNNISYSSKIRIFNSVTRNIICYGAQLWGWKRYDEVERVLYFFMKKLMRC
FT                 PKYAPSALIHFETKLPPIFLYTLKLHYKYLLRSLNLSENRYPKILATEIIK
FT                 KNIFWFSEIKSQAEKFNINFNLNFTNCNNSVLWKTTLNIIIESLNSDFNNI
FT                 CKLKVFNTSYYPFYKELHYTLEDKLYLTDDFSLKSMRWIFKIRGDLLPLNY
FT                 KYFKNTDLECNLCVSNEYEDLFHFLADCPALAELRGRYFGSPTLSRQSFVD
FT                 YLNGKDWVALVQYCTVAYAKRVSLINPG"
XX
SQ   Sequence 2450 BP; 866 A; 367 C; 426 G; 791 T; 0 other;
     tctaatgaaa ataacaaacg tcaaattatt cgtaaaaata attggtttga taaagattgt        60
     aacacggcaa gatctaaatc gtttaagcaa cttaaactat ttagaaaaac aaatgagatg       120
     aaagatagat tattatattt aaattacaac gttatgtata aaactttatg tagggataag       180
     agaaaacaat actacttaga ttgtgctcga caattgtgcg aaactaaaaa cagtaaagaa       240
     ttctggcaaa agatcaagtt atttaaacat gagaattcct ggacagtagg taacgtgtgt       300
     gccgaagatt ggttatggca ctttaaaaac ttacataatc cgtcattaat tactggtaga       360
     ttttcttacg ctgaacccta ctttatcaat gaccacttag acagaccgtt tctgttagaa       420
     gagttagaca taatactgag taattctaaa gagaacaaag cgcccgggac tgatcgaata       480
     ggttatgagt tttacaagta cgcaccaaaa gatttcgtaa taaggttgct gaaattattt       540
     aataaattat tcgaaactgg taatattcca gcctccttta aggaatcgat tatatttccc       600
     ttgtataaga aaggcaataa agatcaggca gctagttaca ggggcatatc ttttattaat       660
     gccatcagca agctgttctc agggctaatt ttaaatagac tgactagttg ggtagaaaat       720
     aataatatac tgcatgagtg gcaggctggc ttcaggtcga attattcgac aatagataat       780
     atatttaatt tgaccaatct aattaagcta aaattaagta tgaaaaagca aaaagtttat       840
     gtattttttg ttgacctttc tgcggccttc gacaatatcg atagatttag tctaatctat       900
     aaactgcact ctttaggtat ctcctcaaaa atagtcaaga ttataaagaa tttgttaact       960
     gatacaacgg cttcagttat gtgtaaaaat ggtctatctt cgagtttctt tactgaaaga      1020
     ggggtgaaac agggatgtct tctcagcccc tgcttgttct cgttgtttgt aaatgaccta      1080
     gagagctatc tggggggagg tgtagtcgtt aacagcaaat gtaagataaa gatgttggcg      1140
     tatgccgacg atattgccct attggcctcg gatccggtat cactccaact aatgataaac      1200
     tctctcgacg aatattgcca attgtggagc ctgaaaatca acctagaaaa gtccaaagtc      1260
     atggtctttc gaaatggcgg tagaccagcc aaaaatgaga aatggttttt gggcttaaat      1320
     agaattgaag tggtcagtga atataaatat ctcggcatag ttcttacccc cacattatct      1380
     atgtctaaac acttaaaaag caagtcatca aaagcaaaac tgagcgtaaa cttaatatgg      1440
     tcacaattta ttgataataa taatatttca tattcatcaa aaattagaat tttcaactca      1500
     gttactagaa atatcatttg ctatggtgcc caattgtggg gatggaaaag atatgacgag      1560
     gttgagaggg ttctttattt tttcatgaag aaattaatga gatgcccaaa atacgcaccc      1620
     tcagcgttaa tacatttcga aaccaaatta ccgcctattt tcctttacac attaaaactg      1680
     cactataaat atctactcag atccttaaac ctttccgaaa atagatatcc caaaatttta      1740
     gctactgaaa taataaaaaa gaatattttt tggttttcag aaattaagag tcaagctgaa      1800
     aaatttaata ttaattttaa tttaaacttc acaaattgta acaatagcgt tttgtggaaa      1860
     actacgctta atattataat tgaatcttta aacagtgatt ttaataacat ttgcaaactg      1920
     aaggtattta atacaagtta ttacccattt tataaagaac ttcattatac tttagaggat      1980
     aaattgtatt taactgatga tttttctttg aaatcaatga gatggatatt taaaattcga      2040
     ggtgatctat taccgttgaa ttacaaatat tttaagaata ccgaccttga atgcaatcta      2100
     tgtgtcagta atgagtatga ggacctgttt cacttcctgg cggattgtcc agcattggct      2160
     gaactgcgcg gtcgttactt tggttcgcct actctttcta gacagagctt tgtggattat      2220
     ttgaacggca aagactgggt tgctttggtt cagtattgta ctgtagctta tgcaaaacga      2280
     gtatcactta ttaatccagg ataattataa atctattttt tgttttccaa ttttcggttt      2340
     aatgctttat gttttatatt gtatagttaa gacagaaaga aggaagtata taaggtaata      2400
     ataataataa cagtataaaa ataataataa taataattta aaaaaaaaaa                 2450
//
ID   RTEX-4_RPr  repbase;    DNA;    INV; 1956 BP.
XX
AC   .
XX
DT   31-JUL-2012 (Rel. 20.10, Created)
DT   31-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-4_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1956
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3486-3486 (2015).
XX
DR   [1] (Consensus)
XX
CC   The 5'-terminal is not determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           345..1742
FT                 /product="RTEX-4_RPr_1p"
FT                 /translation="MYDNAGMFLKNKHHLEEIAITEGVLQGDCLSPLLFIL
FT                 FISDIIEYFEQRNSKGLSINNKKELNILLFADDVVLLSQSWSDTVLKLKIL
FT                 ETYCRDNSIILNPLKTKVIPFSTSNRLKNIKTVFWQGEALKIDKQYVYLGV
FT                 PFSSNSKFKSAAQYFLDKSVPQIGKVISILCKAKCNSWEARLKLFDAIVSS
FT                 TLLYSSEFWASQNLHTVERGQVRFFKQLLCWPKCTPDYIVRLETGRVPLSV
FT                 TVFKKMLSYWTRVLAMEESRLPKLCFNKLKQLETVGTGGADRNWFSQLRRW
FT                 LTVIGEPDVIFETDVAIIKKNIPDLIEKWTNHVRSMDIQRAINSSYSSVYR
FT                 HISGLGMIEEYVKYNCAIDKIRVVSQLRVASDKSVKVWFKSGGYHSIDTQS
FT                 VCTICNLNKYETLEHLLIECPIYKPIRSHYLSEFVSENAPYKSLCIKNKDH
FT                 LNRIYFFTTEALKIRSFCLNE"
XX
SQ   Sequence 1956 BP; 674 A; 297 C; 377 G; 601 T; 7 other;
     aaaaggkstk ataatwctga tcctgtmaat taccgcggta tcgcgctaat aaattctatc        60
     tgtaaaatat ttacgkggtt gttagcaaaa agaataatgc agtgggcaga ggaaaataaa       120
     atacttcctg aggaacaggc aggttttaga cagaatcgtg gatgcctcga ccatatattt       180
     acacttgttt caatgatagg gattcatacg agatttaaaa aaagttattt cattggcaca       240
     tttatagatt ttaagagggc gtttgactcc atcgttcatg aaaaattgtg gaataaatta       300
     catcacgctg ggctgagtgg aagmttatta gaattttgaa aaaaatgtat gataatgccg       360
     gcatgttcct aaaaaataaa caccatctgg aagaaatagc aattacggaa ggcgtattgc       420
     aaggtgattg tttgagtccg ttattattta tattgtttat cagcgatata attgagtatt       480
     ttgaacagcg taattcaaag ggcctaagta taaataacaa aaaagaatta aatatactgt       540
     tatttgccga cgatgtagtg cttcttagtc aatcgtggag tgatactgtc ttaaaattaa       600
     aaatacttga aacttattgt agagacaatt caattattct aaatccatta aaaactaaag       660
     tgataccgtt tagtacaagc aaccgtttaa aaaatatcaa aaccgttttt tggcaaggtg       720
     aggcgctaaa aattgataag caatatgtat acctcggagt accattctct tcaaactcaa       780
     aattcaaatc agcagcccag tacttcttag acaaatccgt tccccaaata ggcaaagtta       840
     taagcatatt atgcaaagcc aagtgtaata gttgggaagc caggctgaaa ttatttgacg       900
     cgattgtctc ctccacattg ctttacagtt ccgaattttg ggcttcacag aatttacaca       960
     cggtagaaag agggcaagtg aggtttttca aacagctcct ttgttggccc aaatgtaccc      1020
     ccgattatat agttcggtta gaaactggaa gggtaccgtt aagcgtcacc gtttttaaga      1080
     aaatgttgtc ctattggact agggttctgg caatggaaga gagtaggttg ccaaaattgt      1140
     gttttaacaa gctcaaacag ttagaaacag taggtacagg aggagcagac aggaattggt      1200
     tcagtcagtt gcggcgatgg ctgactgtta tcggagagcc agatgttatt tttgaaacag      1260
     acgtcgcaat aattaagaaa aatattccgg atctgataga gaagtggaca aatcatgtga      1320
     ggtctatgga tattcaaaga gcaattaact caagctatag ttcggtttac aggcatatta      1380
     gtgggctagg tatgatagag gagtacgtta aatacaattg tgcgatcgac aaaattaggg      1440
     ttgtgagcca gctacgagta gcaagtgata aaagtgtaaa agtctggttc aaaagtggag      1500
     gctaccactc tatagatacg caatctgtct gcacaatatg caatttgaat aagtacgaaa      1560
     ctctcgaaca cctgttaata gaatgcccca tttataaacc aattagatcc cactatctat      1620
     cagagtttgt tagcgaaaat gctccttata aatctctatg tattaaaaat aaggaccact      1680
     taaacagaat atattttttt acaacagaag cattaaaaat aagatcattt tgccttaatg      1740
     aataagtatt attttctggt attaaatttt agttttttat gtatgctcgt cagtttaata      1800
     tacttatata tatatataaa ttagttaatt aagtgtactt atgtagaact cagtttgtat      1860
     tgatttttat ttcattttat tgaaaaattg taaagcacag aacccctgta atgtgtatat      1920
     ttaaacacta aatacagtaa acatctatct atctat                                1956
//
ID   RTEX-5_RPr  repbase;    DNA;    INV; 4854 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-5_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4854
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3487-3487 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(485..1249,1253..4498)
FT                 /product="RTEX-5_RPr_1p"
FT                 /translation="MNGEILELLKQFRLELKKDMEEVGLKMVQEIKEHVNS
FT                 IDNSMKLVQNKIKYFDREIKKRNLVLFGINQEFSNCWELESFVCEFFKEKL
FT                 ELNIAANEFDFVKRLGKRNNENGRPILLGMTTFRTKLLIIQNAFKLKGTKV
FT                 FISEDYPKEVIELRKKLQPQLTEARKAGKFATLRYDKLIIKDNYQVMNKKR
FT                 LMSISPPSEKEKQKGGLDDNSVKKNRLEDGKSPSLNSPIFTARTSAITNQA
FT                 AQIGKVDGASHTKTQLCSSHRMDIMAYNISGMKKAIINQDFVRYVKMFEIF
FT                 MLFETHVEERDIIKYQNLFSEYTVKWIPASRTSTMGRPSGGCMYGIKVNYY
FT                 TNKYVKFVNVSEYLMIQMQLNKYYAYIVPVYLNCSVWEQDFHNLSKVLLEN
FT                 SNLNYCLMGDFNGRTACLQKIPKNSLGPQPVIQNFARNSKDKISNKNGIRL
FT                 LQLLDDLNLIILNGRVKGDLAGELTFMNANGSSVIDYCCMSPEILAHIFDF
FT                 KIEFQNFSDHMPLLLSVHTSICHPVASSNPLLKLVWREEDKFNYQYKLNNY
FT                 LKAIKLITNNTARKIEFFEYLIKKAANFNPNPKRVLVFKNKWFDKDCSNAR
FT                 KLSNKLLNRFRKTDEHGDKTAYLRCNKQYKDLCATKKIQYYKSMVNMINSS
FT                 KNSKDFWRAVRSIKGSNPVYYNNISMSDWVNHFESMYYNNNLCSNVIYYAM
FT                 PLIHNSRLDEKFTIEELERVLSKVKRGKAPGLDGITYEYYSNATPEFLNAM
FT                 LNIFNELFETGEIPVSFKKSLIFPILKKGNCNVVSNYRGISFNNAIGKLYT
FT                 GLILNRLSDWANDGVLSEFQAGFRQGYSTIDNIFTLVNIVKLKLSIKRQKI
FT                 YACFVDFSSAFDTINRRSLIFKLHNLGLSTRVVCVIEELLNGTAGSVLCKE
FT                 GRSNEFNINVGVKQGCLLSPLLFSLYINDLENWFDGGGVLLGSRRIKILAF
FT                 ADDVVLLASEPQSLQRMINSLAEYTNLWNLRINLDKSKILVFKNGGRPAKN
FT                 EKWFLQGNRIEAVNQFKYLGMTLTSGAIFQKHLMEKLAKAKQGLNTIWKSL
FT                 MENDRINFYSKLKIFNTVSRAIVCYGAQIWGGVYFEEVEKLFRFFIKKLFR
FT                 LPQYVPSIFIYNEINYLPIYVHTLKMHFDYLIKVFNMSEDRLPKTVATQIV
FT                 EKKIFWFQDIVNLCDKYKINYKVSLNDIHGWNSIFKEILDYNRLYFVNLHK
FT                 ERIRSYELYPLYRDLNFDLGKRHYLRSDLSLSEVRWIIKARASTLILGKPP
FT                 YLQSGDENNYCQLCNEAVLDGTYHFIAVCVRLAEMRMKYFNKPQLSGERMI
FT                 ALLNGEAWKLFQKYCKDAYNSISPK"
XX
SQ   Sequence 4854 BP; 1688 A; 663 C; 901 G; 1602 T; 0 other;
     agtgtaaact gtgatacagt gaacatcttg tctgtttcaa acgtgtgtaa aactggttaa        60
     aacgcggcgg tttgacttga aaattggtat acaggtgcta taaacaagtg tcaatattgt       120
     gtagaaattt caagtaaatg taccggatag aacttatcta aagattaatt atataatttc       180
     ttattgtaat caacagtata agttagagcc gaacttttgc tgaagtgggg tagacagtga       240
     ggggaacttc aagcaagaaa tagattacaa gaaagggtaa ataaacaaac tgtattatct       300
     gctaatcttt aagtaatata tagttacttc ttttggttta ataacagttt tgttggacaa       360
     cttttttaat taagaaataa atttttttac tagaaaattc agaaatatat gaataacaat       420
     tgtcaattac ttatttaaca ataaaattaa actgtattgt tgattcataa aaaagaaaat       480
     aaaaatgaac ggggaaattc ttgaactatt aaagcaattt cgtttagaat tgaaaaaaga       540
     tatggaggaa gttggtctaa aaatggttca agaaatcaaa gaacacgtta atagtataga       600
     taatagtatg aagctggttc aaaataaaat taaatatttt gatcgtgaaa taaagaaaag       660
     aaatttggta ttatttggaa tcaaccaaga attttccaac tgttgggagc ttgaatcttt       720
     tgtctgtgaa ttctttaaag aaaaattaga gctgaatatt gctgcgaacg aatttgattt       780
     tgtcaagcgg ctcggaaaga gaaacaatga aaatggtcga cccattctcc ttggaatgac       840
     gacttttcgt acaaaactcc ttattattca gaatgccttc aaattgaagg ggacaaaggt       900
     tttcatatcg gaggattatc cgaaggaagt aattgagctg agaaaaaaac tgcaaccgca       960
     actcactgaa gctaggaaag caggtaaatt tgcaaccctg aggtacgata aacttattat      1020
     aaaggataat taccaagtta tgaataagaa acgcctaatg tcaatatcac caccatctga      1080
     gaaggaaaaa cagaaaggag ggctagatga taactcagtt aaaaagaata gattggagga      1140
     tggaaagtcg ccctctctaa acagtcccat atttacagct cgaacctcgg caattaccaa      1200
     tcaggctgcg cagattggaa aagttgatgg tgcttcacat acaaaaacat agcaattatg      1260
     cagcagtcat cggatggata ttatggctta caacatatca ggaatgaaaa aggctataat      1320
     caatcaggat tttgtgagat atgtaaaaat gtttgaaatt ttcatgcttt ttgagaccca      1380
     tgttgaagaa agggatataa taaaatacca gaacctattt tcggaataca cagtgaaatg      1440
     gataccagct agcagaacat caacaatggg cagaccttcg ggcggatgca tgtatggtat      1500
     taaagttaat tattacacta ataaatatgt gaaatttgtg aatgtgtctg aatatctgat      1560
     gatacaaatg cagttaaata agtactatgc ttatatagtc cctgtttatt taaattgtag      1620
     tgtgtgggaa caggattttc ataatttgtc aaaagtattg ctcgaaaata gtaaccttaa      1680
     ttattgtttg atgggtgatt tcaatggcag gactgcatgt ttgcaaaaga ttccgaaaaa      1740
     cagcctgggc cctcagccgg tgattcaaaa ttttgccagg aattctaaag ataaaattag      1800
     taataaaaat ggtatccgat tgttacaact cttagatgat ctgaatttaa ttattttaaa      1860
     tggacgcgtt aaaggagatt tggctgggga attaactttt atgaatgcta atgggtcttc      1920
     agtaatagac tattgctgta tgagtccgga aattttagca catatttttg actttaaaat      1980
     cgaatttcag aatttttcag atcacatgcc tctcttgcta tctgttcata cctcgatttg      2040
     ccaccctgtg gctagttcta atcctttatt aaagctagta tggcgtgaag aagataaatt      2100
     taattatcag tataaattaa acaactattt aaaagctatt aaactaatta caaataatac      2160
     agcaagaaaa attgaatttt ttgaatatct aattaagaag gcggctaatt tcaatcccaa      2220
     tcctaaacgt gttttagtat ttaaaaataa atggtttgat aaagattgct ctaatgctcg      2280
     aaaactctct aataagcttc tcaacagatt tagaaaaaca gatgaacatg gcgataaaac      2340
     ggcgtattta aggtgtaaca agcaatataa agatctatgt gctacaaaaa aaatacagta      2400
     ttataaaagt atggtaaaca tgattaacag cagtaaaaat agtaaggatt tttggcgtgc      2460
     tgttagatct ataaaaggtt ctaatcccgt atattacaat aatatatcaa tgtcagattg      2520
     ggtaaatcat tttgaatcta tgtactataa taataatttg tgctcgaatg taatctatta      2580
     tgctatgcca ctcatccata attctagact tgatgagaaa tttacaatcg aagaattgga      2640
     aagagtacta tccaaagtta aaagaggaaa ggccccaggc ttggatggta tcacctatga      2700
     atactatagc aatgctactc ctgaattttt aaatgctatg ttgaatatat ttaatgaatt      2760
     gtttgaaact ggagagatac cagttagttt taaaaaatca ttaatctttc ccattttgaa      2820
     aaaaggcaac tgcaatgtgg tatctaatta tagaggcatt tcatttaata atgctattgg      2880
     taaattgtat actggtctta tattaaacag actgtcagat tgggcaaatg atggagtact      2940
     tagtgagttt caggcagggt tccgtcaggg ctactccacg attgacaata tatttaccct      3000
     ggttaacata gtgaaattga aactgagtat taaaaggcaa aaaatttatg catgttttgt      3060
     ggacttttcg tccgcattcg atacaattaa tagacgttct cttattttta aattgcataa      3120
     tttgggcctt tcaaccaggg tggtatgtgt catagaagag ttgctgaatg gtactgctgg      3180
     ctctgtcctg tgcaaagaag gaagaagcaa cgagttcaat attaatgtgg gcgttaaaca      3240
     aggctgcctc ctcagtcctt tattattctc gttgtatatt aatgatctag agaattggtt      3300
     tgatggaggt ggtgtgctac ttggttcgag aagaattaaa atactagcct ttgctgatga      3360
     tgttgtactt cttgcttctg aaccgcagtc cttacaaaga atgataaatt cgctggctga      3420
     gtatactaat ctgtggaatc taagaattaa tttagataaa tcaaagattc tagtttttaa      3480
     aaatgggggt agaccggcaa aaaatgaaaa gtggtttctc caaggcaata gaattgaagc      3540
     ggtaaaccaa ttcaaatatc taggcatgac tctcacctct ggtgcgatat ttcagaaaca      3600
     cttaatggag aagttagcta aagctaaaca gggtctgaat acaatatgga agtcgcttat      3660
     ggagaatgat agaataaact tttattccaa gctgaaaatt ttcaatactg taagccgcgc      3720
     cattgtatgt tacggagctc agatttgggg aggcgtttat tttgaggaag ttgaaaaatt      3780
     gttccgtttc tttattaaaa aattatttag attacctcaa tatgttccat caatatttat      3840
     ttataatgaa ataaattatc tgccaatata tgttcatact ctgaaaatgc attttgacta      3900
     tttaattaaa gtttttaata tgtctgaaga cagactacct aaaacagttg caacccaaat      3960
     tgttgaaaaa aagatattct ggtttcagga tatagttaat ctttgcgata aatataaaat      4020
     aaattataaa gtaagtttaa atgatataca tggttggaac tcaattttta aagaaatcct      4080
     cgattataac aggctatatt ttgtaaatct acacaaagaa agaattagat catatgagtt      4140
     atatccatta tatagggatt taaatttcga tttggggaag cgacactatt tgcggagcga      4200
     tctctctctc tccgaggtgc gttggattat aaaggctcgg gcttcaacat taattttagg      4260
     taaacctcct tatttgcaaa gtggtgatga aaataattat tgccaattat gtaatgaagc      4320
     agtgctggat gggacttacc acttcattgc ggtctgtgtt agacttgcgg agatgaggat      4380
     gaaatatttt aataagccgc agctttccgg agagaggatg atcgctttgc tgaatggtga      4440
     agcttggaag ttgtttcaga aatattgcaa agatgcctac aacagtatat ccccaaaatg      4500
     atttaatgat tttacccagt ttattgtaca attgttacgt atgtttattg ttataattat      4560
     tattaatttt ttttattttt tcatattatt ttattttcat ttatgttaat ggaaactgtt      4620
     gtttgagttt gtttttattt tctcttgtct taatgttcag agatttttta gttttgttcc      4680
     agaagtaatt attttcttta attttatttc ctttatgatt caatgtattt aacgactcca      4740
     ccgacggtta taccatggtg ctgtctttat atttgatatt ttgttgttta ctcttttttt      4800
     tttcataatg tatgtactta aagtaaataa taaagactaa aaaataaaaa aaaa            4854
//
ID   RTEX-6_RPr  repbase;    DNA;    INV; 5124 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-6_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5124
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3488-3488 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           451..1374
FT                 /product="RTEX-6_RPr_1p"
FT                 /translation="MPDTADSTKSAFEAIMSKLEDMDKRFIDLEKKIDNSK
FT                 SELLENVNKLLLSQNTRIDGFEEKLKKMEERLSLLEQKTKSSNVNRKNNII
FT                 LYHVGETPAEMYENLESLVLDIICNKLEIGITKMEINWLQRLGTYDPLRNR
FT                 PILIKLTSFSRKREILRASRKLSGTRISLSDDYPPEVRDTRKRLLPYKIDA
FT                 IASGLRCHLRRDKLFVGGKIFTLEELQKKGQPKLTVGAAACESSSTDDVEV
FT                 PNTEQGKRSAKKKNVEVRKTRGKLKKEEEKSVNTVKGDDALMKWLTKTPKD
FT                 AGPSTRSRRKVVSSPE"
FT   CDS           join(1579..3120,3193..4791)
FT                 /product="RTEX-6_RPr_2p"
FT                 /translation="MFNNFDVIGLSETWLVDNTFHVPDFLKNFSFVYSNAI
FT                 KESVKGRPSGGLALCIKNNFTFKVLFKFSYCLIVSIDLLTESYVVCLIYFK
FT                 PSCNINSCIEHVSELLMQIENTCAYITKTIIMGDFNCRIGDLNEWDEDVFE
FT                 GSCLHNVRCSLDRVVDSKGRKLINVLESNGYIVCNGRSLSDSPGKFTYLSN
FT                 IGNSVIDLVCVNGQGLSDVVDFEVLAILGVSDHSGCLLKIKGGIPSSSSVN
FT                 RYFNNMLAQNKFIWNDNFLDNYQFYLASSPLIYFNSYKVDDLLDNLYSVIS
FT                 VAASNSGMVKKVTIWQRKFKENVWFNYDCRAAKKQLKLCHRKLKKSNFGVN
FT                 EVSSYIACRKAYRALLKSSKLNYQLSLQSAIANIKNPKQFWSIVRNLSSKN
FT                 RFGNINVNDFENYLTSLYPSRSLCLPTGLLGFVPCLDSAITLTELQSALKS
FT                 CKRNKTPGIDLIANEFYTNLTPAWEHYLLNLFNQILTHEVVPRKWSAVELR
FT                 CFIRKEILAIPQTIGELLVIPEEQSGFRAGRSCLDNLFVLSSVINARIQNK
FT                 RKVYGIFVDMKRAFDSVCHNKLWDKLSSLGISVKIINILQSLYNNASFVIN
FT                 FNNAYSRKIEITEGVLQGESMSPLLFSLFISDIVAFFRQSGVEGLPICRTC
FT                 DLLMLMFADDVVILAESWLDAQRKLRILNSYCEFTGLAVNSEKTKVVIFHG
FT                 KGRIPKQRQLFYGNMSIEITNNYIYLGVKFSSSGKFLHALSHFERKASIAT
FT                 NRVRTILLRSRADSWDTMMTMYRAIVRATFLYSAELWGCLYNERVEACQTR
FT                 FLKSMLSLPVNTPHYLVRLETGCEWLRVMLFRAMLKWWVKLLKMPDSRLPR
FT                 ICFLNAVRTEGGSMDYNWASQLRSLLIMVGADNLWLQQDLCTVQLNLSDLV
FT                 LRMRNHCISLDINRALNSRYNTMYRTVSLLGEPESYLRLKSNFKKIKFICQ
FT                 IRLSSDNLLRFSIAGRYYSIMASDICILCSRAPESLYHILFTCPALNHLRS
FT                 IYLRDYECSLSSLFSDLHLIHKINNIYKYFLHAMSLRDLIN"
XX
SQ   Sequence 5124 BP; 1538 A; 762 C; 1035 G; 1785 T; 4 other;
     taaaggtcgg tactttgtag tgtgcacttc gtgtctctat aaaatttgtt ttttcataag        60
     gttgtaattc gtggttggtg ctgcattttt gcatgattat agtttatata ttgttaatcc       120
     tattgtgaaa ttttgaagaa attttatcga gccaattagg ataaattagt taaaaactta       180
     attgtttgaa ctgattagga gagacttgtt caggtatgtc tgtatgagca ttacatgtaa       240
     gtgtagtggt gggaggtgta cacgtcatca acgtcttatc tgcttgtcag ctgaaaggga       300
     ttagtctgta cagctatcag acgtcatttg tttttaggat tacgaactcc tggtaaggaa       360
     gttcatagac ttaaagattg ttgacaagtt tgtttttatt tattattttt atacaaaagt       420
     aattgaagcc ctttaaattt atttctaatt atgccggata ctgcagattc tacgaaatca       480
     gcttttgaag caataatgtc taaattggag gatatggata agaggttcat tgatttagaa       540
     aagaaaatag ataattctaa gtcagagttg ctagaaaacg tgaataaatt gcttttatct       600
     caaaatacga gaattgatgg atttgaagaa aaactgaaga aaatggaaga gaggctgagt       660
     ttattagagc aaaaaacaaa atcttcgaat gttaatcgta aaaacaatat tattttatat       720
     catgttggag aaacacctgc ggagatgtat gaaaatcttg aaagtttggt gctagacatt       780
     atttgtaata aattagagat tggtattacc aagatggaaa ttaattggct tcaacggctt       840
     ggtacatatg acccattgcg aaaccgtcca attcttatta aactaactag tttttctcgt       900
     aaaagagaaa ttctcagagc atctaggaaa ctctctggta ctagaattag cctttcggat       960
     gactatcccc ctgaggtgag ggacactagg aagcggctgt taccgtataa aatagatgct      1020
     atagcatctg gtttgagatg tcatttacgg cgtgataagc tgtttgttgg tggtaaaatc      1080
     tttacgctgg aggagcttca gaaaaagggg cagccgaaac ttaccgttgg agcagctgct      1140
     tgcgagagct catctacgga tgatgtggaa gtccccaata cggagcaagg taaacgatcg      1200
     gctaaaaaaa agaatgtgga ggtaaggaaa actagaggta aactgaagaa agaagaggaa      1260
     aagtcagtaa acacggtcaa aggtgacgac gccttaatga aatggttaac caaaactccc      1320
     aaggatgctg ggccaagtac acgatcgaga agaaaagtgg tttcaagccc agaatagcaa      1380
     tcagacctgt cattgccggc taccagcagt tgtttcaacc aggcttcttc tagggtttat      1440
     aatttttcta ataacaaatt agttaatgat tcttttgttg cgcttcaatc tgattcctta      1500
     tttaataatt ttcagttttt ttcgtggaat gtttgtggta ttaaaaattt atataatttt      1560
     gatgcttccc aaaaagagat gttcaataat tttgatgtaa ttggtcttag tgagacatgg      1620
     cttgttgata acacttttca tgttcccgac tttttgaaaa attttagttt tgtttatagt      1680
     aatgccatta aggaaagtgt aaaaggaagg cctagtggag ggctggctct atgtattaag      1740
     aataatttca cttttaaagt attatttaaa tttagttact gtttaattgt gtccatagat      1800
     ttactgactg agtcttatgt agtgtgttta atatatttta aaccttcttg taatattaac      1860
     agctgcattg agcatgtttc agagttgttg atgcaaattg aaaatacatg cgcttatatt      1920
     acaaaaacta ttataatggg cgattttaat tgccggatag gagatctaaa tgagtgggac      1980
     gaggatgtat ttgagggctc ctgcttgcat aatgttaggt gttccttaga tagagttgtt      2040
     gattctaaag gaaggaagtt aataaacgtt ttagagagta atggatatat tgtatgtaat      2100
     ggtcgtagcc tctctgactc gcctgggaaa tttacttacc tgtctaatat aggtaactcg      2160
     gtaatcgatt tggtatgtgt gaatggacag ggcttgagcg atgttgttga ttttgaggta      2220
     ctcgctattc ttggcgtttc tgaccattcg ggttgccttc tcaaaataaa aggtggaatt      2280
     ccctcgtcta gttctgttaa ccgttacttt aacaatatgc ttgcgcagaa taagtttatt      2340
     tggaacgata acttcttaga taactaccag ttttatttag cttcttctcc acttatttat      2400
     tttaatagct ataaagtaga tgatcttctt gataatctgt acagtgttat ttcggtggcc      2460
     gcgagtaatt ctggaatggt caagaaagtc actatttggc agaggaaatt taaagagaat      2520
     gtgtggttta attatgattg tagagcggct aaaaagcaac tgaaactttg tcataggaaa      2580
     ttaaaaaaga gcaattttgg cgtgaatgaa gtgagcagtt atatagcttg tcggaaagca      2640
     tacagggcct tgttaaagtc tagtaaattg aattatcagc tctctttaca atcagcaata      2700
     gctaatatca aaaatcctaa acaattctgg tctattgtta gaaatttatc ttcaaaaaat      2760
     cgttttggaa atattaatgt aaatgacttt gaaaattacc ttacaagtct ttacccttcc      2820
     agatcgttat gtttaccaac aggattgctt ggatttgtcc cgtgtcttga ttcggcaata      2880
     acacttacag aactacagtc tgcattaaaa tcttgcaaaa ggaataaaac gccaggtatt      2940
     gatttaatcg caaatgaatt ctatactaac ctaactcctg cttgggagca ttacctctta      3000
     aatttattta atcaaattct tacccatgag gtggtaccta ggaaatggtc tgcagtggaa      3060
     ctgagatgct tcataagaaa ggaaatccta gcgatcccgc aaactatagg ggaattgctc      3120
     tgacctgttc tgtkgctaaa attttcataa tatcctgaac acgcgkttwa taggttgggc      3180
     aagtgagaat gagttatccc tgaagaacag tcaggattta gagctggacg gagttgtctt      3240
     gacaatttgt ttgttttgtc atctgtaata aacgcacgaa ttcagaataa gagaaaagtt      3300
     tatgggatat ttgtcgatat gaaacgtgcs tttgattccg tttgtcacaa taaattgtgg      3360
     gataagcttt cttctttagg tattagtgta aaaattataa acattttaca atcattgtat      3420
     aataatgcca gttttgttat aaatttcaat aatgcttact cacgtaagat tgagatcacg      3480
     gaaggagttt tacaaggaga atctatgtca ccacttctgt tcagtttgtt tatttcggat      3540
     attgttgcgt ttttccggca atcaggagtg gaaggcctcc ctatatgtag gacttgcgac      3600
     ctcctaatgc taatgttcgc cgatgacgta gtgatattgg cggaatcttg gttggatgcc      3660
     caacgtaaat tgagaattct caattcttat tgtgaattta ctggtcttgc tgttaattca      3720
     gaaaagacaa aggttgttat ttttcatgga aaaggcagaa tcccaaaaca gcgtcagttg      3780
     ttttatggaa atatgtcaat agagattact aacaattaca tttatttggg cgtcaaattt      3840
     agttcatcag gtaagttttt gcatgcatta tcccattttg aaagaaaagc aagcattgca      3900
     accaacaggg tccgtactat tttgttgcga tctcgtgcag atagttggga caccatgatg      3960
     accatgtaca gagcaattgt aagagcaaca ttcctgtaca gtgccgagct ttggggttgc      4020
     ctttataatg aacgggttga agcatgtcaa acgcgtttct tgaagagcat gttgtctttg      4080
     cccgttaaca cgcctcatta tttggttcga ttggaaactg gatgcgaatg gttgagagtg      4140
     atgctgttta gggcaatgct taagtggtgg gtaaagttac tcaaaatgcc tgattctaga      4200
     ttgcctagga tttgtttttt gaatgcggtt agaacggaag ggggatcaat ggattacaat      4260
     tgggcctcac aattgagatc actgttaata atggttggtg ctgataactt atggttgcag      4320
     caagatttgt gcaccgttca gcttaatctt tctgacttgg tgctgagaat gagaaatcat      4380
     tgtatctcac tggatatcaa tcgtgccctt aattctcggt ataatacaat gtacaggact      4440
     gtgagtttgc ttggcgagcc agagagttat ctccgactta aatctaattt taaaaaaatt      4500
     aaatttattt gccaaattcg cttgtcttcg gataacttat taaggttctc tatcgcaggt      4560
     aggtactatt cgattatggc cagtgatata tgtattttat gtagcagagc gccagaatcg      4620
     ttgtaccata ttttatttac ttgcccagcc ttaaatcatt taagatctat atatttacgc      4680
     gactatgaat gctccctcag ctcactattt agcgatctcc atctcattca taaaattaat      4740
     aatatatata aatattttct gcacgccatg tccctaaggg atcttataaa ctaattaata      4800
     ttttttttcc gtgatctgtt tcattagatt cattctatgt attccttttt gtttatttta      4860
     taatttcttt tttcttttta ttacctagga ttatctgatc tatttgtttt tgtttccaac      4920
     ataatgtttt tttttgtttt tgttcttaaa attatgtaat taaagccttg attttgtttt      4980
     tattttgtaa tcaaagttga tttttatttt actttcttat tttgtctcca tgctattatc      5040
     agtttgtata atatagtctg tactgatctt actctatttg taaaaactta tgtttacaca      5100
     aataaattat tattattatt atta                                             5124
//
ID   RTEX-7_RPr  repbase;    DNA;    INV; 4517 BP.
XX
AC   .
XX
DT   02-AUG-2012 (Rel. 20.10, Created)
DT   02-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-7_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-4517
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3489-3489 (2015).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           61..969
FT                 /product="RTEX-7_RPr_1p"
FT                 /translation="MSLSLNDIMASIKEFKAEFCAKYDNILEKMEANEKNI
FT                 SKFLLKVDENIKMVQELERRLSRYENLHRRKNLILYNLPEKTNEKPWALEQ
FT                 EIQTIFSDVLQSDITLKDTDVIKRIGLVKGKRPIIIRFTSLRCKLELLRKA
FT                 KNLKGSDLVLSEDFPVEIREIRKKLYSYWKEARNSNKKVYMKYDKLWVEGR
FT                 LYSLEELRSKFGATSVCSSGSGSEEDSASTGIENLSDGTLRNWLKEGKLIK
FT                 RRIFKKRKAEESPEKRHTFRRPQTSKPLSAKKKKGDKKMEERGSGKEDKVE
FT                 EKEKSGGKCST"
FT   CDS           1367..4297
FT                 /product="RTEX-7_RPr_2p"
FT                 /translation="MDSDECILMLEEFIRFLDNSEHIIIGGDWNARVSDLN
FT                 QIEDSIFEGYNVTGFRSSLDAFCNTRGRKLVRCMEEYGFILLNGRTISDSP
FT                 AQFTNITANGCSIVDTVWLSPDLIELVHDMEVSSIPELSYHLPVILSLNKL
FT                 NKHLIECKVHDRMEKYCLFFNETNIKNYLSILAQTNNIYFNSDCSELLYNN
FT                 MADCFMYCALSSGLIKVKKNVCSSLIFKNKLWYNEECRTAKNNVKTCYKNL
FT                 KKNGYSEYNYILLSDSKKQYRKCLEEVKKKFYDEKLNCLSDVKNSKTFWHT
FT                 IKFFNKNKRTDIPVSIEQFSSYYKDFYMDKITLNNDLFYVSDPVLDGDITL
FT                 SELQIAIGNCKLNKTPGSDNLSYEVYKIMPPNWEHYVLNLFNNILHTEIVP
FT                 VKWTEILFFSDPGNYRGIALINCIVKLFTSILANRIMNWANNSKILPEXQS
FT                 GFRPGRVDCIFVLNSIVNISLGYRNKKNIFAAFIDSLDYSKLWPKLHEIGL
FT                 SAKIIKTLKSLYDRATIVLKDNSTMETVDVTQGVLQGDSLSPLIFSLFISD
FT                 LIVHLKNSDCNGVNVDHHTEITALMYADDLVLLDDNWAAANKKLKSLSVYC
FT                 HQNSLTVNPDKSKILIFKRGGRVKSMKPLFYDNFKIEIVKQYIYLGVLFSS
FT                 SGLFSLTADHFIRKSQLASRKVREILIKSKSDSLVTRKKLLESMINSVLLY
FT                 SAEIWAPLYCSKLECVQTRYFKSIFHWPRNVPNHYVRIEVGLESIETEVLK
FT                 KMVRWWHKVQLMDGNRLPKICLNILKSLSNDRISVVKFNWYTQLKGKLDSI
FT                 DAVSLLNTSEMSQFKDEFSSSILKFRNNKFSLDINAVLHSNYNPDFRKISS
FT                 LTLGEQYLSLRVPIIKHKLISQMRLCQPRSFQITSSGFRNSFQADTSNCPI
FT                 CSIPEREDLQHFLLKCLRLQSYRDKYLNKYISSISDVDVQVQALLDVADID
FT                 KLNDLFYFITSAFKMRNFVLSL"
XX
SQ   Sequence 4517 BP; 1614 A; 597 C; 791 G; 1514 T; 1 other;
     attcgcaaca tagtaattta taatagtgtc tttaattaaa ataacataaa gttaatagca        60
     atgtctctta gtttgaatga tattatggcc tccattaaag aatttaaagc tgaattttgt       120
     gcaaaatatg ataatattct agagaaaatg gaagctaatg aaaagaatat aagtaaattc       180
     ttattaaaag ttgatgaaaa tattaaaatg gttcaagaat tagagagaag gctttctagg       240
     tacgaaaatt tacatagaag gaaaaattta attttgtaca atttacctga aaagactaat       300
     gagaaacctt gggctttaga acaagaaatt caaactatat tttctgatgt tctacaatct       360
     gacattactt taaaagatac tgatgtaatc aaaagaatcg gtttagtcaa aggaaaacga       420
     cccataataa tcagatttac atcgttaaga tgtaaattag aattgttgag aaaagcaaaa       480
     aacctaaagg gctctgatct tgtgctgagt gaagattttc cagtggaaat cagagaaatt       540
     agaaagaagt tatattcata ttggaaggaa gcaagaaatt ctaacaaaaa agtttacatg       600
     aaatatgata aattatgggt ggaaggtaga ctttacagtc tggaagagtt gcggagtaag       660
     tttggagcaa cttcggtttg ttcttcagga agtgggtcag aagaggattc cgccagtact       720
     ggaattgaaa atttatctga cgggaccctt cgaaattggt taaaagaagg taaattgatt       780
     aaaaggcgaa tattcaagaa aagaaaagca gaagaatctc ctgagaaacg tcacactttt       840
     cgtcggccac agacatcgaa acctctctca gcaaagaaaa aaaaagggga taagaaaatg       900
     gaagaaagag gatccggaaa agaagacaaa gttgaagaaa aggaaaaatc agggggaaaa       960
     tgttcaacgt aaatgtgaat taaaagaagg attaacaaac cagcctctct caggtaataa      1020
     atttaaaata attttctgga acgttgaagg atttaacaaa ctatttaata tagattcgga      1080
     cttaattaat tttctgcgga gtagtgctgt attatgtttc acggaaactt ttataactag      1140
     tcagtctata attaaaccca cttggttaga taatttttgg gaatttaatt ctattgctat      1200
     taaaatattg aaaaaaggcc gacctagtgg aggtattatt actcttgtta acaaactata      1260
     ttgcgatgac gcgagtttat tactttcttc agagagaggc ttatttgtta aacttagaat      1320
     taactctttc tctttaacta ttggaaatat atattggagt cctttgatgg actcggatga      1380
     gtgtattctg atgttagaag aatttattag atttctagat aattcggaac acataataat      1440
     tggaggtgac tggaacgcaa gggttagcga tttaaatcag atagaagatt caatatttga      1500
     aggttataat gttactggct ttaggagtag tttagatgca ttttgtaata ctagaggaag      1560
     gaaattagta agatgtatgg aggaatatgg ttttatactg ttgaatggta ggacaattag      1620
     tgatagccca gctcagttta ctaatattac agctaatggt tgcagtatcg tggatactgt      1680
     atggttatca cctgatttaa ttgagttagt gcatgatatg gaagtctcct ccattccaga      1740
     actcagctat cacttacctg taattctttc tctaaataaa ttaaataaac atctaataga      1800
     atgtaaggtt catgacagaa tggaaaaata ttgtttattt tttaatgaaa caaatatcaa      1860
     aaattattta tctatattag ctcaaacaaa taatatttac tttaattctg actgctctga      1920
     attgttgtat aataatatgg cagactgttt tatgtattgt gcactttcgt ccggtcttat      1980
     aaaagtgaag aaaaatgtat gctcgagttt aattttcaaa aataagttat ggtataatga      2040
     agagtgtaga acagctaaaa ataatgtcaa aacttgttat aaaaatttaa agaaaaacgg      2100
     atattctgag tacaattata tcttactttc cgatagtaaa aaacagtata gaaaatgttt      2160
     agaagaagtg aaaaagaaat tttatgatga gaaattaaac tgtttatctg acgtcaagaa      2220
     ctctaaaaca ttttggcaca ctattaaatt ttttaataag aataaaagaa cagatatccc      2280
     agtttctatt gaacagttta gctcctatta caaagatttt tatatggata aaattacttt      2340
     gaataatgat ttattctatg tttcagaccc agttttagat ggggatatta cactttcaga      2400
     attacaaata gcaattggta attgtaaatt gaataaaacg ccagggtctg acaatttatc      2460
     ttacgaagtc tataaaataa tgcccccaaa ctgggaacat tacgtcttaa atttatttaa      2520
     taacattctg catactgaaa tagtaccagt taaatggact gaaatccttt tcttttctga      2580
     tcctggtaat tataggggaa ttgctttaat aaattgtatt gtcaaacttt tcacgtcgat      2640
     attagcaaat cgtataatga attgggcaaa taatagcaag atacttcctg agsaacaaag      2700
     cgggtttaga ccaggaaggg ttgactgtat ttttgtctta aattcaatag taaatattag      2760
     tctgggttat agaaataaga agaatatttt tgcagcattt atcgattcgc ttgattatag      2820
     caagttatgg cccaaacttc atgagattgg tctgagcgct aaaattatca aaactttaaa      2880
     aagtttatat gaccgggcaa ctatagtcct aaaagataat tctacaatgg aaactgtaga      2940
     cgtgactcag ggtgtcctgc agggtgattc gttgagtccc ctaatattct ccctatttat      3000
     ctcggacctg attgttcacc taaaaaatag tgattgcaat ggcgttaatg ttgaccatca      3060
     tactgagatt actgcgttaa tgtatgccga tgatcttgta ttacttgatg ataattgggc      3120
     agcagcaaat aaaaaactaa aatcactttc tgtttattgt caccaaaatt ctttaacagt      3180
     aaatcctgat aaatctaaaa tattgatttt taaaagggga ggtagagtga aatctatgaa      3240
     accccttttt tacgataact tcaaaattga aatagtaaaa caatacattt atctcggagt      3300
     gcttttctct tcttcaggcc ttttttcact tacagctgac cattttatta gaaaatcaca      3360
     attagcatcc cgtaaagtta gagaaatttt aataaagtca aaatcggatt cgctagtgac      3420
     aagaaaaaaa ttattagaat ctatgattaa ttccgtttta ttatacagcg cagaaatttg      3480
     ggctccatta tattgcagta agttagaatg tgttcagacc agatatttta aatccatctt      3540
     ccattggcca cgaaatgtgc ctaatcatta tgtacgtata gaagttgggt tagagtctat      3600
     tgaaactgag gttctaaaaa agatggttag atggtggcat aaagttcaac taatggatgg      3660
     taaccgcctc ccaaagatat gtttgaatat tttaaaatcc ctcagtaatg acagaatatc      3720
     tgtggttaaa tttaattggt acactcagtt aaaaggaaaa ttggattcta ttgatgcagt      3780
     tagcttgcta aatactagcg aaatgtcaca atttaaggat gaattcagca gtagcattct      3840
     gaaatttcgg aataataaat tttctttaga cattaacgct gttctgcatt caaactacaa      3900
     tccagacttc agaaagataa gtagtctaac gctgggtgag caatatttgt ctcttagggt      3960
     gccaattata aagcataaat taattagtca aatgaggtta tgtcagcctc gttcatttca      4020
     aatcacttct tctggtttca gaaacagttt tcaagcagat acctccaatt gccctatatg      4080
     cagtattccc gaaagagagg atttacagca ctttttatta aaatgtttaa ggctgcaatc      4140
     ttatagagat aaatacttga ataaatacat ctctagtatt tcagatgtag atgttcaagt      4200
     tcaagctcta ttagatgtag ccgatattga caaattaaat gatttatttt attttataac      4260
     aagtgccttc aaaatgagga atttcgtttt aagtttataa aaatactttt ataattttgt      4320
     tttgtttata attttttatg tttttaaatt ttggttcttt ttattttcat tcgattggaa      4380
     tgtatatttt tagttttcaa ttcaagtttt tatttatgtt ttataaggtt ttattttgtt      4440
     gtatttaacc aaactccatt tgtatagggt agaaccctta aaacaaataa aattattcta      4500
     ttctattcta ttctatt                                                     4517
//
ID   RTEX-8_RPr  repbase;    DNA;    INV; 5038 BP.
XX
AC   .
XX
DT   03-AUG-2012 (Rel. 20.10, Created)
DT   03-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-8_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5038
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3490-3490 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(438..1349,1353..4700)
FT                 /product="RTEX-8_RPr_1p"
FT                 /translation="MSQETLDKFFSPITAKDSKRRRSSSSPDLSDKKLLRM
FT                 DKDSAEIEGGSFQPSFLNEIKVMMKSMNEQISKLATKEDIGKLEEKIERVL
FT                 TDNEKMTVELAGLKEENKQLRDRVGALENRVRRNNLIFRGVPDSADYEQAV
FT                 KDICRNVLGLQEEVSIVQAFPISKSSATSENKVVLAEFLAYKDVLKINAKL
FT                 RNIKDTGLNIHQDFEPETRLRRAKLLALRREVKRTSPNLRIRLRTDMLLVT
FT                 GNNGHVIKLKWGDEHGLRTTDGKDGMKALAELTGSDFSNFFKEGMEINAKA
FT                 HRVSSQHHHRHSWHLSGEAPHYNTETTTARKMDNRVKNNVTYSIDNSTLFT
FT                 FLYYNIRGLLNKKYDRNFLNLVRSYKIFCLSETFVLERDFCKFEYLFTGFN
FT                 LKWLGAEKDETKHGRAKGGMLLGFSNELSDYIMYEQINNLIVIKIRKDNQT
FT                 VSILPIYLNCTSWGRDFNNLCKNYVEFNLNNCVLIGDCNARVSNFQILSDE
FT                 VNLESTLNERKSKDKILNVEGKQFIEFCEDYGLFIMNGSTENDKEGEYTFV
FT                 GPMGNSVIDLCCVPSHCLMYVNSFKVLSELYSDHMPIELGLKIGKVFTGSN
FT                 TVSNILPKLIFTEKDRNCYKNKLKLEMEKHSDLPLESQNAVNCLVERIKKT
FT                 AELGNKLHENKKMIVFKEVWYDYDCFKLRKKVFKLLKLFRKTDSALVKQLY
FT                 IQTNKSYKELCHNKYREYYENLFCKLKHTSNSKDFWSITNLFKKRNRILSP
FT                 TCTPNELVDYFKSLLNPPLKSLLVSYAEPLIQNTHLDNIITMDELNNVLSK
FT                 VKENKAPGSDRVPYEFYMNAPIEFLQSLLNVFNSIFNDGSIPNSFTRAIIF
FT                 PLYKKGDPSLISNYRGLSFIDTVAKLFSGILKNRLEHWIDTEGILHEFQAG
FT                 FRPGYSTTDQIFSLYNIIHLRWTQSGSNKKLYAFFVDFKSAFDCIDRRALF
FT                 YKLSNMGVSTKMLNCIKGLFRGSAAAVWINQRLTETFQIEMGVKQGCLISP
FT                 LLFSLFLNDLFDELDGGVNLGGLRIKLLAYADDVVILADNIITLRRMIRNL
FT                 DKYCEMWNLFVNLEKSKIVIFKPNSGKPSNKEKWYFRGQLIQNVSEYVYLG
FT                 IKFSSTLNFKTHIKEKLSKSKLAINSFGNMLFSKRDIAFATKLRLFHTTSR
FT                 MVMCYGAQVWGWREYGDVEKLQRFFLKKIFGLPQNTANYFLLLECNLNSMF
FT                 SYTYRLHLSYVNKVLRVMSDDRLPKKLAMMAINRRVCWVEQWHSLLNKHNL
FT                 CMEANRPLAEQWSELSSTLLKAIVDHEKCKLLEAAKNSSTHSVYPFLNFSL
FT                 ANHYLCTQTFQDCKLIIKVRSDMLNLTHKPWLNDSTLFCPLCNLLIAEDLH
FT                 HFMAECPTLAEFRMRFFGSAYLTSVKCLELLNGCNWVALSKFVHHAYGYRN
FT                 LKNKIK"
XX
SQ   Sequence 5038 BP; 1720 A; 695 C; 1000 G; 1623 T; 0 other;
     gagttccgtg ctggtcattg acgagtaaag acgtgttgtt gctgtctcta taaaaaagtg        60
     ttttttatcg gtgttttgtt aaagtttttc taatttgttt ttgtacattt agtaagtgta       120
     ttagtttctg gttcattgtg cgaaatttgg tggaatttct tacggtagaa cagttaaatt       180
     ttagagaaag attatacgaa ttttattaaa attaaatgta ctagccaact gaactagtag       240
     tgcctagagt ggtggggata gctgcacaac ttatctcgca actgtaagca aacttttgtg       300
     ttaaagtcta ataggaattt ggttataatt ttgaaatttt atagttaatt taacacaata       360
     ttacaataaa agttaaaaaa aaaaaaaaaa tcattcattt aatttatttg atatatacct       420
     acgttttgga caccttaatg agtcaggaga ctttagataa attctttagt cctataactg       480
     caaaggattc gaaaagaaga cgttcgtcaa gttctcctga tctatctgac aagaagctat       540
     tacgaatgga taaagatagt gcggaaatag aaggtggaag ctttcaacca tcctttttaa       600
     atgaaattaa agttatgatg aaatctatga atgagcagat ttcaaaacta gcaacaaaag       660
     aggacatagg aaagttggag gagaaaattg agagagttct gactgataat gagaagatga       720
     cagttgaatt ggctggctta aaagaagaaa ataagcagct aagagataga gtgggggcgc       780
     tggagaatag agtgagaaga aacaacctga tttttagggg tgttccggat agtgcggact       840
     atgaacaggc agtaaaggat atatgccgca atgtattggg tttgcaagag gaagtaagca       900
     tagtccaggc ctttccaatt agtaaatcta gcgctacatc tgagaataaa gtggttttag       960
     cagagttctt agcctacaag gatgttctaa agattaatgc taaacttagg aatattaagg      1020
     acactggctt aaatattcat caggatttcg aacccgaaac taggttaaga agagctaaat      1080
     tattggcact cagaagagaa gtaaagcgca cttcacccaa tttgcggatt agactacgta      1140
     cagacatgct gttggtcact ggtaataatg ggcatgtaat taaactcaag tggggtgatg      1200
     aacatggttt gaggacgact gatggcaaag atggaatgaa agcgctggcg gaactcactg      1260
     gttctgattt ctccaacttt ttcaaagaag ggatggaaat taacgctaag gcacatcgag      1320
     tttcttcgca acatcatcat cgccattctt gatggcatct ttcaggtgaa gctccacact      1380
     acaacacgga gacgactacg gccaggaaaa tggataatag agtaaaaaat aatgttactt      1440
     attcaattga taattcaacc ttgtttactt ttttgtacta taatatcaga ggcttactaa      1500
     ataaaaagta tgaccgaaat tttttgaact tagttagaag ctataaaata ttttgtctta      1560
     gtgaaacgtt cgtattggag agagattttt gtaagtttga atatttgttt accggtttta      1620
     atttaaaatg gttaggagct gaaaaagatg aaactaaaca tggtagagca aaaggaggta      1680
     tgttgttagg atttagtaat gagctatctg attatataat gtacgaacag atcaacaatt      1740
     taattgtaat taaaatacgt aaggataatc aaacagtttc tatcttgcca atatatttga      1800
     attgtacttc ttgggggagg gactttaata atttatgtaa aaattatgtt gaatttaatt      1860
     taaataactg cgttctaata ggggattgta atgccagggt ttcaaatttt caaattctgt      1920
     ctgatgaggt aaatctagaa agtacactta atgaaagaaa atctaaagac aaaatactaa      1980
     atgttgaagg taaacagttt atagagtttt gtgaggatta tggtctgttt ataatgaacg      2040
     gtagcactga aaacgataag gagggtgagt atacgtttgt cggtccgatg gggaattcgg      2100
     taatagattt atgttgtgtt ccctctcatt gtcttatgta tgttaatagt ttcaaagtgt      2160
     tgtccgagtt gtattctgac catatgccta tcgaactggg tctaaaaata ggtaaggttt      2220
     ttaccggaag taatactgtt agtaatatat taccaaagtt aattttcact gaaaaagatc      2280
     gtaactgcta taaaaataaa ttaaaactag aaatggaaaa acattctgat ttgccattgg      2340
     agagtcagaa tgcggttaac tgtttagttg agagaattaa aaaaacggca gaattaggta      2400
     ataaacttca cgaaaacaag aagatgatag tttttaaaga ggtttggtat gattatgatt      2460
     gtttcaagtt aagaaaaaaa gtttttaaat tattaaaatt atttagaaag acggactctg      2520
     ccctagtaaa acaattgtac atacagacaa ataaaagtta taaagagtta tgccataata      2580
     aatacagaga atactatgag aatttatttt gcaagttaaa gcatacaagt aactctaaag      2640
     atttctggtc aattactaac ttatttaaaa aaagaaatag aattttgtca cctacttgta      2700
     cgccaaatga attagtggac tattttaaat cgttactaaa cccgccctta aaaagtttat      2760
     tggttagcta cgcagaaccc cttatacaaa atacccattt agataatatt attacgatgg      2820
     atgagctaaa taacgtgttg tcgaaagtta aagaaaacaa agctcccggt agtgacagag      2880
     tgccctacga attttatatg aatgcaccaa tcgagttttt gcagtcattg ttaaatgttt      2940
     tcaattcgat ttttaacgat ggatccattc caaatagctt tactagagct attattttcc      3000
     ctctttacaa aaaaggcgac ccaagtttaa tctcaaatta tagagggtta tcgtttatcg      3060
     atacagttgc aaaattattt tctggtattt tgaaaaacag actggagcac tggatagaca      3120
     ctgagggtat tcttcacgaa tttcaggcag gttttcgtcc gggatattcc acaacggatc      3180
     agatattttc tttgtataat ataatccatt tacggtggac tcagtctggg tctaataaaa      3240
     agttatatgc cttctttgtt gattttaaat cggcatttga ttgcattgat agacgtgctc      3300
     ttttttataa gctgtctaat atgggagttt caacgaaaat gttgaattgt ataaaaggcc      3360
     tgtttagggg ttcggctgca gcagtatgga ttaatcagcg gttaactgaa acttttcaaa      3420
     tagaaatggg tgttaaacag ggatgtttaa taagtccgtt actgtttagt ttgtttttaa      3480
     atgacctttt tgatgaactg gatggtggag taaatttagg cggcctgaga atcaaactgt      3540
     tggcgtacgc cgatgacgtg gtcatcttgg cagacaatat tattactttg aggcgtatga      3600
     tacggaatct ggacaaatac tgcgagatgt ggaatctgtt tgtcaatcta gaaaaatcta      3660
     agattgtaat tttcaaaccc aattctggca agccgtcaaa caaagaaaaa tggtattttc      3720
     gcggacagct aattcagaat gtcagtgaat atgtttatct gggaattaag ttttcctcca      3780
     ccttgaattt taaaactcat ataaaagaaa aacttagcaa atctaaattg gcaattaaca      3840
     gttttgggaa tatgttgttc tctaaaaggg atatcgcttt tgctacaaag ttaaggttgt      3900
     ttcacactac atcgcgaatg gtgatgtgtt atggagcaca agtgtgggga tggagggaat      3960
     acggtgatgt ggaaaagctc cagagatttt tccttaaaaa aatctttggt ctccctcaaa      4020
     acactgctaa ttattttttg ctgttagaat gcaatttgaa cagtatgttc tcctatactt      4080
     atcgactcca tctgagctat gtgaataaag tgttgcgcgt aatgagtgat gataggttgc      4140
     cgaaaaagct ggctatgatg gcaattaata ggcgggtgtg ttgggttgag cagtggcact      4200
     cattgttaaa taagcataat ctatgtatgg aagctaatag gcctttggcg gaacagtgga      4260
     gcgagctatc tagtacatta ctgaaggcta ttgttgatca tgaaaagtgt aaattgctag      4320
     aagcagcaaa aaatagttcc actcattcag tttacccctt tttaaacttt tcactggcta      4380
     accattatct gtgtacacaa acatttcaag attgcaaatt aattataaaa gtaagatcag      4440
     atatgctcaa cttgacacat aaaccgtggt taaacgatag cacgctcttc tgtccgcttt      4500
     gtaatctgct tatagctgag gaccttcatc atttcatggc ggagtgccct actttggcgg      4560
     agttcagaat gcgttttttt ggttccgcat acttaacttc cgttaaatgt ttagaactgt      4620
     taaacggttg caactgggtt gcacttagta aatttgtgca tcacgcttat ggctatagaa      4680
     atttaaaaaa taaaataaaa taaaaaaata aaaaataaaa ataaataaga aaaataaata      4740
     aataaataaa actgtatttt gagaaatgaa taatttaatt gcaactctct ctccaatcac      4800
     aatataatat atttacaata caataaacta aaatccattt atcatatatt ttaaatttag      4860
     tgtaaaaaat attattgttc aatttgtaaa aagaactttg gttaaaatat tttgtctatt      4920
     gtactgttat tgtacggagc tcgcctgacg gtctttgacc aaggcattta cgttttttag      4980
     attttttaaa gtatttttgt tctgttgtac aataaacgtt aaaataaata aataataa        5038
//
ID   RTEX-9_RPr  repbase;    DNA;    INV; 5136 BP.
XX
AC   .
XX
DT   06-AUG-2012 (Rel. 20.10, Created)
DT   06-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   RTEX-type non-LTR retrotransposon: consensus.
XX
KW   RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-9_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-5038
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 15(10), 3491-3491 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           525..1418
FT                 /product="RTEX-9_RPr_1p"
FT                 /translation="MSDSSPINFKRQRSSPGDSDKTLKKKNTANMADYNSS
FT                 EFAAAIRAVMTGLLDEKLAPVATKEDIALLRIDITELKEENARLKAEIESL
FT                 KALSTKSDSRIEELELASRRNNLIFKGVTYSPSADLNSTIGHFCRDLLKVD
FT                 VSSDQFNVIPLGNVTSKPNRPLLVSFLRLQDKIKVLNCTRILKGTGFVVHQ
FT                 DLPEATRKKRSNLLLLRREIMRLNNQIGVGVRTNYLLVDGCKFFWSDQDGL
FT                 RFAGGDGTQKLSSLVKVNLHGFIAALLTGNLPKDYFSSACQNATGSSLLPA
FT                 VPSATS"
FT   CDS           1422..4712
FT                 /product="RTEX-9_RPr_2p"
FT                 /translation="DPPAVCNGGYSSKSLVRPISIISYNVSGLRSKILNSD
FT                 FLHLIRNFDIFILIETFIIEDSFGLFNKYFPEHKLIWESAIRLSNRGRASG
FT                 GKLIGVRNSRANIRVSYSAGHPHICLHNNDNTVIKLLPVYLNCGNWENDFA
FT                 ALCDFCENCPAENMILIGDFNVRIGSSQLLPDDLTLNNPNCNSIRISKDTS
FT                 LNSAGTKFINFCDENDLVILNGRFVDDFEGEFTFVGPMGCSVNDLCCVSYD
FT                 CLPQVERFSVLSETFSDHLPLSVYVNLHEASNDPLPLLPQLIWLDSALDVY
FT                 RANLEVALTSINQFPENAQDYADAITSCIKKASPIPSCSASFIKSYQKKPW
FT                 FNFKCLRARSRSFRCLNLFRKTNSIIAKDAYLQAKKDYVVICTAQRKEYFS
FT                 ALCDKFVAASDSKQFWKLVNCFRRKNFIIGSDLSVDKLMSHFKTLLNPPVV
FT                 SVPSYAEPSLFSPTLDSPFSSDELLTITSNLRRNKAPGPDRITYEFYRYAP
FT                 TVFLDKLLAFFNYIYERSDIPPSFGKSIIFPLYKKGNISDVTNYRGISCLD
FT                 TVAKIFTSLLLARLNQFVSEGNLLTEFQSGFRRGYSALDNIFILTNLVNLK
FT                 LSAKGRKIYCFFIDLKSAFDTINHSSLFLKLFNLGVSSKFIRALKMLYSFA
FT                 ASSVRCSDRISNFFKVGSGVRQGCLLSPILFALFIDDLPSLLEGGVLIGDT
FT                 KIKILLYADDIVLISDNPVTLQRNINILEVYCNQWNLSVNLQKSKIIIFRK
FT                 GGRFASSEKWTYRGERIEVVNRYKYLGVVLTPRLSFLPHLEDRVSQAKIGI
FT                 NRVWSNFILNRNVPLSSKYRVFGSISRAVVCYGAQVWGFQSYDVLEKFQRF
FT                 FIRKLFSLPSSSPNYMLAIETAMEPLECFTLHLHLKYCLKVLSLPDCRLPK
FT                 KVALEVIKGGSYWFKHWLTLSRTYSCQFNGSLDDLSKWGSQLSPLRSKICV
FT                 AHLEQSVSRAVASDRFLLYRFLLSEYRDQVTASLSHDLSFNEVRWLFKLRG
FT                 ELLFLNFRPWLERDSDLERCQLCNSGRPEDMYHFLGECPLLAEFRLLYFNK
FT                 HILSRADVVSFLSGQEHPRPLLQFARLAWKVRYGWISDSN"
XX
SQ   Sequence 5136 BP; 1378 A; 905 C; 964 G; 1889 T; 0 other;
     gagttcactg tttgcttctg tagtgataac atcgctgcgt gttttttcgt taaaaaagtg        60
     gtttaaagtt aacgtagaaa aataattttt tgccagtgtt ttctttaatg tgtgtctgtg       120
     gttgtggtaa aatttcagaa aaatctatcg actggtttga gagttttaga ttattttaaa       180
     acttattaaa tctgaggatt tgatagtgaa ctgatgtgga gggggaagct atcttacttt       240
     cgctagcccc acctgcttca tacatagtac actggtatta tttatcttta agaagaagta       300
     atattgttta tttttcaaat aatactttta atatcagact gtttataaac atttctttct       360
     tttcacttct aatttgccgt ttaagtgctt attttgctca ttttatatta tattttttat       420
     ttttttttat tttttctgat tttataactt aataagaggt gaaaaaatta acatattgga       480
     tttacatttg tggaaaatta aacaaaaaag tacgtatttg ttacatgtcg gattcctctc       540
     cgatcaattt taaacgtcag aggagttcac caggggattc tgataagact ttaaaaaaaa       600
     aaaatacagc taatatggct gattataatt cttctgaatt tgctgcggca ataagggcgg       660
     tgatgaccgg attgcttgac gaaaaactgg cacctgttgc tacgaaagaa gatattgctt       720
     tgctcagaat cgatattaca gaactcaagg aggaaaatgc tcgacttaag gcggaaatag       780
     aatctttaaa ggctttaagt actaaatcag attctagaat tgaggaatta gagttagctt       840
     ctcgcagaaa caatttaatt tttaaagggg tgacttattc tccgtcggcc gatctcaact       900
     ctacaattgg tcatttctgc cgagatttac tgaaggttga cgtttcatcg gatcaattca       960
     atgttattcc tctaggaaat gttactagta aacctaatag acctctgttg gtgtctttcc      1020
     tgcgccttca agacaagatt aaggttctta actgcactag aattttgaaa ggtacaggtt      1080
     ttgttgttca tcaagatctc ccagaggcca cccggaagaa gcgttctaat cttcttctgc      1140
     tgaggagaga aattatgaga ctgaacaatc agattggtgt gggagtccgc acaaactact      1200
     tactggtgga tggctgtaaa ttcttttggt cagatcaaga tggcttacgt tttgctggtg      1260
     gtgatggcac tcaaaaatta agcagtttag tgaaggttaa ccttcacggt tttatcgcag      1320
     ctctactaac tggcaatctt cctaaagatt acttttcatc tgcatgccaa aatgctactg      1380
     ggtcatcttt actgcctgca gtaccttctg ctacttcctg agatcctcct gccgtctgca      1440
     acggaggcta ttcttcaaag agtcttgttc ggcctatctc tattatttct tataatgtct      1500
     ccgggttacg atcaaaaatt cttaattcag attttttgca tttaattaga aactttgata      1560
     tttttattct gattgaaact tttataatag aagattcttt tggtttgttt aataaatatt      1620
     ttccagaaca taagttgatt tgggagtcag ctattagact atctaaccgt gggcgagcta      1680
     gtgggggtaa attaattggg gtgaggaatt cccgtgctaa tattcgtgtt tcttattcag      1740
     ccggacatcc tcacatctgt ttgcataaca atgataatac ggtcattaag ttattgccgg      1800
     tctatctgaa ttgtggtaat tgggaaaatg acttcgctgc tctttgtgat ttttgtgaaa      1860
     actgccccgc tgaaaatatg attttgatag gagactttaa tgttaggatt ggcagttctc      1920
     agcttcttcc ggatgattta acacttaaca atcctaattg caattcaatt agaatatcaa      1980
     aagatacatc gcttaattcc gccggtacta aatttattaa tttttgtgat gaaaatgatc      2040
     ttgtgatttt gaatgggcgc tttgttgatg attttgaggg tgagtttact tttgttggcc      2100
     caatgggctg ttcggtaaac gacctttgtt gcgtatcgta cgactgccta ccccaggtgg      2160
     aacgtttttc tgttttgagt gagaccttct ctgaccattt acctctttct gtgtatgtta      2220
     acttacatga agccagtaat gatcctttac ctttgttgcc tcagctgatt tggttggact      2280
     ctgccctaga tgtttatcgc gctaatcttg aagtcgctct tacttctata aatcaatttc      2340
     ctgaaaatgc tcaagattat gcggatgcca tcactagctg cattaaaaaa gcgagtccca      2400
     taccatcttg ttctgcctcc tttataaaaa gctaccagaa aaagccctgg tttaatttta      2460
     agtgtttgag agcaagatcc agatcattta ggtgtcttaa tttatttcgt aaaactaatt      2520
     ccataattgc caaagatgcc tatttacaag caaaaaagga ttatgttgta atatgtacag      2580
     cacaaagaaa ggaatatttt tcagctcttt gtgataagtt tgtagctgcc tcggactcca      2640
     aacaattttg gaaattggtt aattgttttc gtcgtaagaa ctttattata gggtctgatt      2700
     tgtctgtgga taagttaatg tctcacttca aaactcttct caatcctcct gtagtatctg      2760
     ttccttccta tgctgaacca tctctgttct ctcccacttt agattctcct ttctccagtg      2820
     atgagctgct taccataact tctaatctta ggcgtaacaa ggctcccggg cctgatcgca      2880
     taacttacga gttttacagg tatgccccta ctgtatttct tgataaactt ttggcttttt      2940
     ttaactatat ttatgagcgg agcgatattc ctccatcttt tggcaaatcc ataatttttc      3000
     cactctataa aaaagggaat attagtgatg ttacgaacta cagaggcatc tcctgcttag      3060
     ataccgtggc aaaaattttt acctcattgt tgctcgcccg tttaaatcag ttcgtgtccg      3120
     aaggcaactt gttgaccgaa tttcagtcag gctttaggcg tggttattct gctttggata      3180
     acatatttat tttaacaaac ttagtaaatc ttaagctctc tgcgaagggt cggaaaattt      3240
     attgtttttt catcgacctt aagtcagcct tcgacactat taaccactct tctttgtttt      3300
     tgaagttatt taacttgggc gtctcttcca agtttataag ggctttaaaa atgttatact      3360
     cctttgcagc ttcctcagtc cgttgttcag acagaatatc caattttttt aaagttggat      3420
     caggagtgag acaaggatgt cttttgagtc ccattctgtt tgcactcttc atagacgatt      3480
     tgccatcgct tctggagggt ggggtactta tcggtgacac aaaaataaaa attctgcttt      3540
     atgctgatga tattgtgctc atctccgata atccagtaac actccagaga aatattaata      3600
     ttttagaggt atactgtaac cagtggaatc tctctgtcaa tttacagaag tcaaaaataa      3660
     ttatttttcg aaaaggcggt aggtttgctt cttcggaaaa gtggacatat aggggtgaaa      3720
     gaattgaggt ggtcaacaga tataaatacc ttggagtagt tttgactcct cgtctttcct      3780
     tccttcccca cctagaagac agagtatcac aagcaaaaat aggcataaac agagtttggt      3840
     caaacttcat tctgaataga aatgtacctt taagctccaa gtaccgggtg ttcggcagta      3900
     tatcgcgtgc agttgtgtgc tatggagccc aagtatgggg ttttcagtcg tacgatgtgc      3960
     tggaaaaatt tcagagattt ttcatcagga aattgttctc cctaccttca tcctctccta      4020
     attatatgtt agcaatagaa acagctatgg aacctctgga gtgtttcaca cttcatttac      4080
     atcttaaata ttgcctcaag gtactctctc tcccggattg cagactgcct aagaaggtgg      4140
     cgcttgaggt gataaagggg ggatcttact ggtttaagca ctggctcacc ctatcacgaa      4200
     catattcttg ccaatttaac ggtagtttag acgatctttc gaagtggggt agccagcttt      4260
     ctcctttgag atctaagatt tgtgtagctc atctcgaaca gtctgtgagt cgagcggttg      4320
     cttcagatag attcctttta tataggtttc tattaagtga gtatagggac caggttacag      4380
     cctcattatc gcacgatctt tccttcaatg aagtgcgctg gttatttaaa ctaaggggtg      4440
     aacttttatt cttgaatttc agaccttggc tcgaaagaga ctctgatctg gaaaggtgtc      4500
     aactttgtaa ttctggtagg ccggaagata tgtatcattt ccttggagaa tgcccccttt      4560
     tggcagaatt tcgtttactc tattttaata agcacattct ctcgagagct gatgtagttt      4620
     cttttttatc aggccaagaa catccccgtc ctttgctcca gttcgctcgc cttgcctgga      4680
     aggttaggta tggttggata tctgactcta attagttttt gtgtagcctt atttatttct      4740
     ctctctctct ctctttcttt ttttttgttt tttaattccc tttttatatc tcaactagtt      4800
     tgtattttct aggcgtgatt ttcatttttg tatatttgta tgtaattatt gtttttttaa      4860
     ataactcttt atttcattta tatttttgga ttaattattt acttatttgt tattattttt      4920
     ttttttatta tttgtttttt acctttttat tttattatac tggtttgatt tatttatttg      4980
     tagtttaatt tgtttagtta caagaagaaa aattaattac ttttgcagtg aactctggca      5040
     gacggctaaa gccattgcta gtatattttg tatatattat ctaatgtaaa ttactttttc      5100
     aaaaataaat attattatta ttattattat tattat                                5136
//
ID   RTE_Ele2    repbase;    DNA;    INV; 3406 BP.
XX
AC   .
XX
DT   27-OCT-2010 (Rel. 15.10, Created)
DT   27-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An RTE clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE_Ele2.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3406
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3406
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           334..3351
FT                 /product="RTE_Ele2_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GSIPNFSPTTKNGERRNNERYFRQPTWQRNKDYEWKL
FT                 GTWNVRTLNEPGRASLLARELQKVGVGVAAIQEVRWPRSGEREFRAVDPIA
FT                 NTTFKYNIYHSGGDKAEHGVGFIVIGKQMKRVMKWKPISERICVLRIRGKF
FT                 FNYSLINIYAPTNDKPDDVKDAFYEGLDKAYGECPKHDVKIVIGDANAQVG
FT                 REDFFRPIIGKESLHSVTNDNGLRLVTFAAARGMAICSTYFARKDIRKHTW
FT                 RHPNGDICNQIDHILVDGRHFSDVIDVRSFRGPNIDSDHYLVVSKIRARLS
FT                 TVANSRPQRTMRFNIQRFSADGVTAEYHQKLDERISEVNVSENLNNLWDAI
FT                 HGVVSETAREVIGTARRRPRSGWFDEECQRVTDEKNVARRRMLVSGTRLNR
FT                 ERYREARSAEKRIHRRKKKEFDENVIAEAQNCMEQNDMRRFYETVNGVRRK
FT                 SAPSPVMCNDREGNLLTDKTMVAARWKEHFETLLNGGNDRASENRMNIDND
FT                 GQAVEPPSLDEVKKAIKELKNNKAAGKDELPAELLKHGSEQLHRIIHHILL
FT                 RIWEEEELPASWMDGLICPLFKKGHRLECANYRGITLLNSAYKIMSRILFN
FT                 RLRPLEESFVGEYQAGFREGRSTSDQMFTLRQILDKFREYNLQTHHLFIDF
FT                 KAAYDSVKRNELWEIMMEHGFPTKLIRLIRATLEGSKSSIRVADEISTSFV
FT                 TLDGLKQGDALSNLLFNIALEGAIRRACVHRNGTIITRSYMLLGFADDIDI
FT                 IGIDRRAVEEAYVPFKRETTRIGLIINTTKTKYMVAGRHRGPIGDVGSEVV
FT                 IGGDIFEVVEEFVYLGTLVTCDNDVTREVKRRIAAASRAFYGLRNQLKSRS
FT                 LQTKTKLALYKTLILPVALYGHESWTLKEVDRRAFGVFERKVLRTILGGKL
FT                 DNGIWRRRMNHELYQVYNEMDIVKRIKHGRLRWAGHVARMSEERQAKQIFS
FT                 REPGRGRRLRGRPRTRWLFAVEEDLRSLNVQGDWKRLAQDRVQWRRLLHSA
FT                 "
XX
SQ   Sequence 3406 BP; 971 A; 727 C; 952 G; 755 T; 1 other;
     tgggttgtaa aatggtgagt cgacaaccag gaaggagcgt ccaacatagc tctggtcctc        60
     gcaagtccct acctcacgct tcctcgggtc taacgatgac aaagaccgcc agctaagggt       120
     tgcgtactta gctggtagtg caacctgggc actgttgtcc ttctgacatc agctagagtg       180
     agggggtgcg tcccgagcgt ctgttcacca ggaggtgcgg ctcaaacagc gtctgttctg       240
     gtatccagcg gctgagtatg aaatgttgta tcacgtcaac taacctaagg tggcagcccc       300
     atcaacgtga tgtaggtagc gcaaccccgg taaggtagca taccgaattt ctcacctacc       360
     acgaaaaatg gagaaagaag aaataacgaa cgatattttc ggcaaccgac ctggcaacga       420
     aataaggact atgaatggaa acttggtacc tggaatgtca ggacgttaaa tgaacccgga       480
     cgagcgagcc ttttggctcg tgaactgcag aaggttggag tgggcgtggc cgccattcaa       540
     gaagtgcggt ggcctagatc tggagaacgt gaattccggg cggttgatcc catcgccaac       600
     actacgttca aatataacat ctaccacagc ggcggcgata aggcagaaca tggagtcggt       660
     ttcatagtga tcgggaagca gatgaaacgc gttatgaagt ggaaaccgat tagcgaacga       720
     atctgtgtac tgaggatacg gggcaaattc ttcaactaca gcctgatcaa catctatgca       780
     ccgacgaacg acaaacctga tgacgtgaag gacgcgttct atgaaggcct tgataaggcc       840
     tatggagagt gcccaaaaca cgacgtgaaa atcgttatcg gagatgcgaa cgcgcaggtc       900
     ggaagagagg actttttccg tccgatcatc ggtaaggaga gtcttcactc cgttaccaat       960
     gacaacggcc tacgactagt gactttcgct gctgccaggg ggatggccat ctgcagcacc      1020
     tactttgcac gcaaggatat tcggaagcac acctggaggc atccaaatgg tgatatttgc      1080
     aaccagatag accatattct ggtggatggc cgacatttct cagatgtcat cgatgttagg      1140
     agtttcaggg gtcctaacat tgactcggat cactacctcg ttgtcagtaa aattcgagcg      1200
     cggttatcaa ctgtagcgaa ttcaagacca cagcgaacaa tgcgattcaa tatccagcgc      1260
     ttctcagcag acggtgttac agctgaatac caccaaaagc tggacgagcg gataagtgag      1320
     gtcaatgtga gcgaaaacct caacaatcta tgggatgcaa tccatggagt ggtgagtgaa      1380
     acagcgcgag aagtgatagg tactgctcga agacgcccca gaagcggatg gttcgacgag      1440
     gagtgccaga gggtgacgga tgagaagaac gtggccagac gtcggatgtt agtgtctggt      1500
     accaggctga acagagagcg gtacagggaa gcaagatcag ccgaaaagcg aatccatcgc      1560
     aggaagaaaa aagagtttga tgagaacgtg atagccgagg cgcaaaactg tatggaacag      1620
     aacgatatgc gacgattcta tgaaactgtc aatggcgtgc ggagaaagtc agcgccgtct      1680
     cccgtcatgt gcaacgaccg tgaaggtaat ttgctgacag ataaaacgat ggtggctgcc      1740
     aggtggaaag agcacttcga aacgttactg aatggaggga acgatagagc atcggagaac      1800
     agaatgaaca tcgacaacga cggtcaagct gtggagcctc catctctaga tgaggttaag      1860
     aaggcgatta aagagctgaa gaacaacaag gctgctggga aggatgagct cccggccgaa      1920
     cttctcaagc acggtagtga gcagctgcat agaataattc accatatact actaaggata      1980
     tgggaggaag aagaactgcc tgctagctgg atggatggcc tcatttgccc tctcttcaaa      2040
     aaagggcata gattggagtg cgccaattac cgaggaataa cactcctcaa ttcggcgtac      2100
     aaaataatgt cacgtattct gttcaacaga ttgagaccgc ttgaagagtc cttcgtcggc      2160
     gaataccaag ctggttttcg tgagggccga tcgacgtcgg atcaaatgtt taccctgcga      2220
     cagatcctcg ataaattccg ggagtacaac ttgcagactc atcatctgtt cattgatttc      2280
     aaggcggcgt acgattcagt taaaagaaac gagttgtggg aaataatgat ggaacatggc      2340
     tttccgacga agctgattag actgattcgt gcaacgttgg aaggatcgaa atcaagtata      2400
     cgtgttgcgg atgagatttc cacatccttc gtaaccttag acggattgaa gcagggcgat      2460
     gcactttcaa acctattgtt caacatagcg ttagaaggag caataaggag agcttgcgtg      2520
     cataggaatg gcactattat cacacgttcg tatatgctcc ttggttttgc ggacgatatc      2580
     gacataatcg ggattgatcg ccgagccgtg gaagaggcat acgtgccttt taaaagggag      2640
     acaacgcgaa ttgggctcat tatcaatacc acgaagacaa agtacatggt cgctggtaga      2700
     catcgtgggc ccataggtga tgttggtagt gaggtggtga taggtggtga tatwtttgaa      2760
     gtagttgaag aatttgtgta ccttggaact ctagtgactt gcgataatga tgttacccgc      2820
     gaggttaaaa ggcgtattgc agctgcgagt cgggcttttt acggacttcg taaccagcta      2880
     aagtcccgca gcttacagac gaagaccaaa ctcgcgttgt acaagactct aattcttccg      2940
     gtagctctgt acggccacga atcttggacg ttgaaagagg tcgaccggag agcttttggg      3000
     gtctttgaac gtaaagtgct gcgaacaata ctcggcggta aattggacaa tggcatctgg      3060
     cggcgtcgca tgaatcacga gttataccaa gtctataatg aaatggatat tgttaagcgt      3120
     ataaaacacg gcaggctgcg gtgggctggg catgtagctc gcatgtcgga ggaacgtcaa      3180
     gctaaacaaa tattcagcag ggaaccaggg agaggccgtc gcctccgtgg aaggccgcgc      3240
     accagatggc tttttgcagt tgaggaggat ttaaggtcgc ttaacgttca gggcgactgg      3300
     aagcgattgg cccaggaccg ggtccaatgg agaaggcttc ttcattcggc gtagattcaa      3360
     cgcaatagca aggaattgtt gcccatcaag tatcaagtaa gtaagt                     3406
//
ID   RTE_Ele2B_AAe repbase;    DNA;    INV; 3399 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element;
KW   RTE_Ele2B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3399
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1442-1442 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. The consensus is ~87% identical to RTE_Ele2 and ~78%
CC   identical to RTE_Ele5.
XX
FH   Key           Location/Qualifiers
FT   CDS           336..3353
FT                 /product="RTE_Ele2B_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GSISNFLPTTKNGERRNNERYFRQPTWQRNKDYDWKL
FT                 GTWNVRTLNEPGRVSLLARELQKVGVSVAAIQEVRWPRTGEREFRAVDPVA
FT                 NTAFKYNIYHSGSDKAEHGVGFIVIGKQMKRVMRWKPINERICVLRIRGKF
FT                 FNYSLINIYAPTNDKPDDTKDAFYDCLDKTYGECPKHDVKVVIGDANAQVG
FT                 REDFFRPIIGTESLHSATNDNGLRLITFAAARGMAISSTYFARKDIRKHTW
FT                 MHPNGELCNQIDHVLVDGRHFSDVIDVRTFRGPNIDSDHYLVVSKIRARLS
FT                 TVANTRTQRPLRFNIQRLSTEGVADEYRRKLDERIRGYNVGENLNNLWESI
FT                 HGAMSTAAREVIGTAQRRPRNGWFDEECQNVTDEKNVARSRMLVSGTRQNR
FT                 ERYKEARAAEKRIHRRKKRQYEEDIITEAQNSIEQNDMRRFYETVNGVRRK
FT                 TAPSPVMCNDREGNLLTDKILVAARWKEHFEQLLNGEDTSASENRLIISND
FT                 GQAVEPPTLDEVRRAIKELKNCKAAGKDELPAELFKHGSEQLYEMLHRTLL
FT                 RIWEEEELPASWLEGLICPLYKKGHRLECANYRGITLLNSAYKIMSRVLFN
FT                 RLRPLEESFVGEYQAGFREGRSTTDQMFTLRQILDKFREYNLQTHHLFIDF
FT                 KAAYDSVKRNELWQIMVEHGFPAKLIRLIRATLDGSKSSVRVADETSTSFV
FT                 TLDGLKQGDALSNLLFNIALEGAIRRAGVQRSGTIVTRSHMLLGFADDIDI
FT                 IGIDRRAVEEAFVPFQRETARIGLTVNTSKTKYMIAGRQRGSNRDVGSEVV
FT                 LGGEKFEVVEEFVYLGTLVTCDNDVTREVKRRLAAANRAFYGLRNQLKSRS
FT                 LQTKTKFALYKTLILPVALYGHESWTLKEVDRKAFGVFERKVLRTILGGKQ
FT                 ENGIWRRRMNHELYQVYKEVDIIKLIKHGRLRWAGHVVRMPEERQAKIIFS
FT                 REPGRGRRLRGRPRTRWLFAVEEDLRALNVQGDWKRLAQDRAQWRRIIHSA
FT                 "
XX
SQ   Sequence 3399 BP; 970 A; 731 C; 947 G; 751 T; 0 other;
     tgggctgtga aatggtgagc cgacaactag gaaggagcgt ccaacatagc tctggtcctc        60
     acaagtccct acctcacgct tccacgggtc aaatgatgac aaagaccgcc agctaagggt       120
     tgcgtactta gctggtagtg cagcctgggc actgttgtcc ttctgacatc agctagagtg       180
     aggaggtgcg tctcgagcgt ctgtccacca aggaggtgcg gctcaaacag cgtctgttct       240
     ggcatccagc ggctgagtat gaaatgctgt atcacgtcag ctacacctaa ggtggcagcc       300
     ccaccatcgt gatgtaggta tcgcgaccct ggtaaggtag catatcgaat ttcttaccta       360
     ccacgaaaaa tggagaaagg agaaataacg aacgatattt tcggcaaccg acctggcaac       420
     gaaataagga ctatgattgg aaactcggta cctggaatgt caggacgtta aatgaacccg       480
     gacgagtgag ccttttggct cgtgaattgc agaaggttgg agtgagcgtg gctgctattc       540
     aggaagtaag atggcctaga actggagaac gtgaattcag ggcggtggat cccgtcgcca       600
     acacagcttt caaatacaac atctaccata gtggcagcga taaggcagag catggcgtcg       660
     gattcatagt gatcgggaag cagatgaagc gtgttatgcg gtggaaaccg attaatgaac       720
     gaatctgcgt attgaggata cggggcaaat tcttcaacta cagtctgatc aacatctatg       780
     cgccgacaaa cgataaaccc gacgacacga aggatgcgtt ttatgattgt ctcgacaaga       840
     cctacggaga gtgcccaaaa catgacgtaa aagttgttat cggggatgcc aacgctcagg       900
     tcggaagaga ggattttttc cgccctataa ttggtacgga gagccttcac tccgccacca       960
     atgacaacgg cctaaggcta ataacttttg ctgcagctag agggatggcc atcagcagca      1020
     cctactttgc acgcaaagac atccgaaagc acacctggat gcacccaaat ggcgagctct      1080
     gcaaccaaat agaccacgtt ttggtggacg gtcggcattt ctcggatgtc atcgatgtga      1140
     ggacctttag aggcccaaac atcgactctg atcactatct cgttgttagt aaaattcgtg      1200
     cacggttgtc taccgtggcg aacacaagaa cacagcgacc gttgcgtttc aatatccagc      1260
     gcttatcaac agaaggtgta gcagacgagt accgccggaa gcttgatgag cggataaggg      1320
     gatacaacgt aggcgaaaac ctcaacaatc tgtgggagtc tatccacggt gcgatgagca      1380
     cagcagcgcg agaggtgata ggtactgctc agagacgacc cagaaacggt tggtttgatg      1440
     aggagtgcca gaatgtgacg gatgagaaga atgttgccag aagtcggatg ttagtgtctg      1500
     gtacccggca gaatagagag cggtacaagg aagctagagc agccgagaaa cgaattcacc      1560
     gcagaaagaa aaggcagtat gaagaagaca tcattactga ggcgcaaaac agcatcgaac      1620
     aaaacgatat gcggagattt tacgaaactg tcaatggcgt acggagaaaa actgcgccgt      1680
     ctcccgtcat gtgcaatgac cgcgaaggta acttgctgac agacaaaatc ttggtggctg      1740
     ccaggtggaa agaacacttc gagcaattgt tgaatggaga ggacacgagc gcgtctgaga      1800
     acagattaat catcagcaac gatggacaag ctgtggagcc cccgacgcta gatgaggtta      1860
     gaagagcgat taaggagttg aagaactgta aggctgctgg aaaagacgag ctcccggccg      1920
     aacttttcaa gcacggtagt gagcagctgt acgaaatgct gcaccgtact ctgttaagga      1980
     tatgggagga agaagaattg cctgctagct ggctggaggg cctcatctgc cctctgtata      2040
     agaagggcca cagattggag tgcgccaatt accgaggaat aacgctcctc aattcggcgt      2100
     acaaaataat gtcacgtgtt ctgttcaaca gattgagacc gctggaggag tccttcgtcg      2160
     gcgaatacca agctggtttt cgtgagggcc gatcaacgac ggatcaaatg tttaccttgc      2220
     gacaaatcct tgataagttc cgggaataca acttgcagac acatcatctg ttcattgatt      2280
     tcaaggcggc gtacgattca gtaaagagaa atgagttatg gcagataatg gtagaacacg      2340
     gttttccggc gaaactgatt agactgattc gtgcaacgtt ggatggatcg aaatcaagtg      2400
     tgcgggttgc ggatgagact tcaacctcct tcgtaacctt agatggattg aagcaaggag      2460
     atgcgctttc gaatcttttg ttcaacattg ctctcgaagg agctataagg agagcgggcg      2520
     tgcaaagaag cggtaccatc gtcacccggt cgcatatgct cctgggtttt gcggacgata      2580
     tcgatataat cggaattgat cgtcgagccg tagaagaggc attcgtgcct tttcaaaggg      2640
     agacagcgag gattggactt accgtcaaca ccagcaaaac taagtacatg atcgctggta      2700
     gacagcgtgg ttccaatcgt gacgttggta gtgaagtggt gctaggtggt gaaaaatttg      2760
     aagtagtgga agaatttgtg tatcttggta ctttagtgac ttgcgataat gatgttaccc      2820
     gcgaggtgaa aaggcgtctt gcagctgcga atagggcttt ttacgggctc cgtaaccagc      2880
     ttaagtcccg tagcctgcag acgaaaacaa aattcgcgct atataagact cttatccttc      2940
     cggttgccct atacggccat gaatcctgga cgttaaaaga ggtcgaccgg aaagcgtttg      3000
     gagtttttga gcgtaaagtg ctgcgaacaa tactcggcgg taaacaagaa aatggcatct      3060
     ggcggcgtcg catgaatcat gagttgtacc aagtatataa agaagtggat attatcaagc      3120
     tcataaaaca cggcaggctg cgttgggctg gtcacgtggt acgaatgccg gaagaacgac      3180
     aagcaaaaat aatattcagt agagaacccg gacgaggccg tcggcttcgt ggtaggccgc      3240
     gcacacgttg gctttttgca gttgaagagg acttaagggc acttaacgtt cagggcgact      3300
     ggaagcgatt ggctcaggac cgagcccagt ggagaagaat tatccattcg gcgtagattc      3360
     aacgtagcgg attgtagccc atcaagtatc aagtaagta                             3399
//
ID   RTE_Ele2C_AAe repbase;    DNA;    INV; 3397 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   An RTE non-LTR retrotransposon from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element;
KW   RTE_Ele2C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3397
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1443-1443 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. The consensus is ~85% identical to RTE_Ele2 and
CC   RTE_Ele2B_AAe, and ~77% to RTE_Ele5.
XX
FH   Key           Location/Qualifiers
FT   CDS           334..3372
FT                 /product="RTE_Ele2C_AAe_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GSIPNSLSTTKNGERRRNERYFRQPTWQRNKDYDWKL
FT                 GTWNVRTLNEPGRVSLLARELRKVGVCVAAIQEVRWLRSGEREFRAVDPVA
FT                 NTAFKYNIYYSGGDKAEHGVGFIVIGKQMKRVIRWRPINERICVLRIRGKF
FT                 FNYSLINVYAPTNDKPDDVKDAFYECLDKTYGECPKHDVKIVIGDANAQVG
FT                 KEDFFRPIIGKESLHSVTNDNGLRLVNFAATRGMAISSTYFARKDIRKHTW
FT                 QHPNGELCNQIDHVLVDGRHFSDVIDVRTFRGPNIDSDHYLVVSKIRARLS
FT                 TVSSSRNRQSLRFNIQRLSADGVAADYHQKLDERISEIDESVNLSDLWESV
FT                 HGAVSTVAREVVGTAQRRPRNGWFDEECQRMTNEKNMARSRMLVSGTRQSR
FT                 ERYKEARAAEKRIHRRKKKEHEEAVIAQAQEAMEENNMRRFYESVNGVRRK
FT                 TAPSPAMCNDREGNLLTDKTMVAARWKEYFESLLNGNNGSGSGSRIQIDDD
FT                 GQAVEPPTLDEVKKAINGLKNNKAAGKDELPAELLKHGSEQLHELLHRIIS
FT                 RIWEEEQMPTSWLEGLISPLYKKGHRLECANYRGITLLNSAYKIMSGVLFN
FT                 RLRPYEESFVGEYQAGFREGRSTTDQMFTLRQILDKFREYNLQTHHLFVDF
FT                 KAAYDSVKRNELWQIMSEHGFPAKLIRLIRATLDGSKSSVRVVDEISSSFV
FT                 TLDGLKQGDALSNLLFNIALEGAIRRAGVQRSGTIITRSHMLLGFADDIDI
FT                 IGIDRRAVEEVFVPFKRETARIGLTINTTKTKYMIAGGQRGSGRVSGSEMV
FT                 LGGDKFEVVEEFVYLGTLVTCDNDVTREVKRRIAAASRAFYGLRNQLKSRS
FT                 LQTKTKLALYKTLILPVVLYGHESWTLKEVDRRAFGVFERKVLRTILGGKL
FT                 ENGIWRRRMNHELYQVYKEVDIVKRIKHGRLRWAGHVARMPEERQAKIIFN
FT                 REPGRGRRLRGRPRTRWLFAVEEDLRALNVQGDWKRLAQDRAQWRRLIHSA
FT                 QIHRSEL"
XX
SQ   Sequence 3397 BP; 963 A; 755 C; 948 G; 731 T; 0 other;
     gggctgcaaa atggtgagtc gacaatcagg aaggagcgtc caacacagct ctggtcctca        60
     caagttccta cctcgcgctt ccacgggtca aatgatgaca aagaccgcca gctaagggtt       120
     gcgtacttag ctggtagtgc agcctgggca ctgttgtcct tctgacatca gctagagtga       180
     ggaggtgcgt tctgagcgtc tgtacaccag gaggtgcggc tcaaacagcg tctgttctgg       240
     tatccagcgg ctgagtacga aacgctgtat cacgtcagct acacctaaga tggcagtccc       300
     atcaacgtga tgtaggtagc gcgaccccgg taaggtagca taccgaattc attatccacc       360
     acgaaaaatg gagaaagaag aagaaacgaa cgttattttc ggcaaccgac ctggcaacga       420
     aataaggact atgattggaa actcggtacc tggaacgtca ggaccttaaa tgaacctgga       480
     cgagtgagcc ttttggctcg tgaattgcga aaagttggcg tgtgcgtggc tgctattcag       540
     gaagtgcgtt ggctaagatc tggagaacgt gaattcagag cggtagatcc cgtcgctaac       600
     accgctttca aatacaacat ctattacagc ggtggcgata aagctgaaca cggagtcggt       660
     ttcatagtga tcgggaagca gatgaagcgc gttattaggt ggaggccgat caacgagcgg       720
     atctgcgtat tgaggattcg gggcaagttc ttcaactaca gcctgatcaa cgtatatgca       780
     ccgactaacg acaaacccga tgacgtgaag gacgcgtttt acgaatgtct agacaagacc       840
     tatggagaat gcccaaaaca cgacgtgaaa attgtcatcg gcgacgctaa tgcgcaggtc       900
     ggaaaagagg acttcttccg ccctatcatt ggtaaagaga gccttcactc tgttaccaac       960
     gacaacggcc tacgtttagt gaactttgct gccaccaggg ggatggccat cagtagcact      1020
     tactttgcac gcaaggatat ccgcaagcac acctggcaac acccaaatgg cgaactttgc      1080
     aaccaaatcg accatgttct ggtagacggc cgacattttt ccgacgtcat cgatgttaga      1140
     actttcaggg gtcctaatat cgactcagac cactatctcg ttgtaagcaa aattcgagcg      1200
     cgattatcaa ccgtctcgag ttctagaaat cgacaatcgt tgcgtttcaa tatccaacgc      1260
     ctgtcagcag atggtgtagc agcggactac catcaaaagc tcgacgagcg gattagcgaa      1320
     atcgacgaaa gcgtcaacct cagcgatctg tgggagtcag tccacggagc agtgagcaca      1380
     gtagcgcgag aagtggtagg tactgctcaa cgaagaccaa ggaacggttg gttcgacgag      1440
     gagtgccaga gaatgacgaa cgagaagaac atggctagaa gccggatgct ggtgtctggt      1500
     acccgtcaga gcagagagcg gtacaaggaa gcaagggcag ccgaaaaacg gatccatcgc      1560
     agaaagaaaa aggagcatga agaggcagta attgctcagg cgcaagaagc tatggaagag      1620
     aacaacatgc gacggttcta cgagtccgta aatggtgtgc ggagaaaaac agcgccgtct      1680
     cccgccatgt gcaacgaccg cgaaggaaac ttgctgacgg ataagacaat ggtggccgcc      1740
     aggtggaaag agtactttga gtcattgttg aatggaaata atggaagtgg atctggtagc      1800
     agaattcaaa tcgatgacga tggacaggct gtggaacctc caacgctaga tgaggtaaaa      1860
     aaagctatca atgggctgaa gaacaacaag gctgctggga aggacgagct cccggccgaa      1920
     cttctcaaac acggaagcga gcagctgcac gaactccttc accgtatcat atcgaggata      1980
     tgggaggaag aacaaatgcc tactagttgg ttggaaggtc tcatttcccc tttgtacaag      2040
     aaagggcatc gactggagtg cgccaattac cgagggataa cactccttaa ttcggcgtac      2100
     aaaatcatgt ctggagttct gttcaacaga ttgagaccgt atgaggagtc ctttgtcggc      2160
     gaataccaag ctggttttcg agagggccga tcaacgacgg atcaaatgtt taccctgcgt      2220
     caaatcctag ataaattccg ggagtacaac ttgcagactc atcatctgtt tgtagatttc      2280
     aaagcagcgt acgattcagt gaagagaaac gagttgtggc aaattatgtc cgaacatggc      2340
     tttccggcga agctgattag actgattcgt gcaacgcttg atggatcaaa atcaagtgtg      2400
     cgggtggtgg acgagatttc atcatcgttc gtaaccttag atggattgaa acagggtgac      2460
     gctctttcta acttgctgtt taacatagcg ctcgaaggtg ctatcaggag agccggtgtg      2520
     cagagaagcg gtaccattat cacacgttct catatgctcc ttggcttcgc ggacgatatc      2580
     gacatcatcg ggattgaccg tcgggcagtg gaagaggtgt tcgtgccttt caagagggag      2640
     acagcgagaa tcgggctcac gatcaacacc acaaaaacga agtacatgat agctggtggt      2700
     caacgtgggt ccggacgtgt tagtggtagc gaaatggtgc taggtggtga taagtttgaa      2760
     gtggtggaag aatttgtgta tcttggaaca ctagtgacat gcgataatga tgttacccgc      2820
     gaggtgaaaa gacgtattgc agctgcgagt cgggctttct acgggctccg taaccagctg      2880
     aagtcccgta gcctgcaaac gaaaacaaaa ctcgcgttat acaagacact gatccttccg      2940
     gttgtccttt atggccatga atcatggaca ttgaaggaag tcgaccggag agctttcggg      3000
     gtgtttgaac gtaaagtgct gcgaacaata ctcggcggta aactagaaaa cggcatctgg      3060
     cggcgtcgca tgaatcacga gttgtaccaa gtgtataaag aggtggatat tgtcaagcgc      3120
     ataaaacacg gcaggctgcg ttgggctggt cacgttgccc gtatgccgga agaacgacaa      3180
     gcaaagataa tattcaacag agaacccgga cgaggccgcc gacttcgtgg taggccgcgc      3240
     acacgatggc tttttgcggt tgaggaggac ttaagggcac ttaacgttca gggcgactgg      3300
     aagcgattgg cccaggaccg agcccagtgg agaagactca tccattcggc gcagattcat      3360
     cgtagcgaat tgtagcccat caagtatcaa gtaagta                               3397
//
ID   RTE_Ele3    repbase;    DNA;    INV; 3365 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An RTE clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE_Ele3.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3365
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3365
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >97% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           483..3347
FT                 /product="RTE_Ele3_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MKLEILGLSEVRWPNFGEHRIPSGQILLYSGLRGEHA
FT                 PRHRGVGFLLSAQAYAALMKWEPINERIIVARFRTRVRNLTIVQCYAPTDA
FT                 AELQDKENFYSQLNAVVDKIPKGDIKIYMGDFNAKIGSDNSSYEPVMGRHG
FT                 LGEMSENGELLAEFCGNNDMVIGGSLFPHRPVHKVTWVSRDGFTENQIDHI
FT                 CISRKWKRSLLDVRNKRSADIASDHHLLIGEVRLRIARIRRQEERVGRRFN
FT                 TRRLEDATVKRSFVEELETXAANISEGGSVEEQWTAIKNAFITTSENNLGE
FT                 LRTRRKQWITDETWRKIEERREAKAAIERAKTRGAKALSRQRYSALEREVK
FT                 RSCRRDKRAWADSLADEGEKAAATGDIRLLYDISRRLSGAKMNTTMPVKDT
FT                 TGQLLTDPTDQLKRWFEHFEQLFQVSTRPPTPQHDPPRVRRISRVNTEAPS
FT                 LHEIETAIQSMKSNKAPGVDRISAEMLKADPAISAQLLHQLFRNIWDTATF
FT                 PADWMQGVLVKVPKKGDLTVCDNWRGIMLLCIVLKVLCKVILNRIQEKIDA
FT                 TLRRQQAGFRAGRSCVDHIVTLRIILEQVNEFQESLYMVFIDYEKAFDRLN
FT                 HENMWGALRRKGVPEKIIGLIEAQYEAFTCRVLHNGVLSEPIRVVAGVRQG
FT                 CILSPLLFLIVIDEILIGAIDREQNRGLLWQPITMEHLNDLDLADDIAILA
FT                 QRRSDMQSKLDDLAERSSAAGLNINVNKTKSLDVNTAGPSSFTVAGQTVEN
FT                 VENFQYLGSQLASDGGTKIDIGARIKKARAAFASLRNIWKNSQISQRTKIR
FT                 IFNSNVKSVLLYASETWCVSAENTQRLQVFINRCLRYIIRAWWPHNWISNA
FT                 DLHRRCHQQPIQTEIRQRKWGWVGHTLRRGGNEICKQALEWNPAGHRSRGR
FT                 PRGSWRRSLNKEIKEVDGNLTWPQVKAIAGNRPGWKSFTSALCTRMGAQDP
FT                 "
XX
SQ   Sequence 3365 BP; 942 A; 842 C; 885 G; 695 T; 1 other;
     gggctgcaaa atggtgagtc gacggagtcc tcacaagttc ctacctcatg cttccacggg        60
     tcgacggatg acaaatgacc gccagctaag agttgcgtgc ttagctggta gtgcagcctg       120
     ggtcctgtag tccttctgac ttcagctaga ttgaggaggt acgtccaccg agcgtctgtt       180
     caccaaggag gtgcggctca aacagcgtct gtctggcatc cagcggctga ataagaaatg       240
     ctcttccccg gaagctacac ctaagatggc agccccatca cggcggatag ggaaccttag       300
     gctaacaacc tactgtcccc gaaacatcaa aaaatgttca agaaaccgat agagaaagat       360
     tacgaactga tttaacggca acgactttta gcgcgaaaca acggacacga attggaacat       420
     ggaacgtact aaccctagcc cagcagggta aactggcaca actcgccaac gaggcgtgtc       480
     gcatgaagct ggagatccta ggactgagcg aagtccgttg gccaaacttt ggagaacaca       540
     gaataccatc gggacagatt ctgctatatt ctggcctgcg aggtgaacac gctcctcggc       600
     accgtggggt tggctttttg ctcagcgccc aagcttacgc cgcgcttatg aagtgggagc       660
     ctataaatga gagaataatc gtcgccagat ttagaacacg ggtccgaaac cttaccatag       720
     tccaatgtta tgcgccaacc gatgctgccg aattgcagga caaagagaac ttttacagtc       780
     aactcaatgc tgtcgtggat aagattccga agggtgatat caagatctac atgggcgact       840
     tcaatgcgaa gatcggatcc gacaactcga gctatgagcc tgtcatggga cgccatggtc       900
     tcggagaaat gagcgaaaac ggagaactgt tggcagagtt ttgtggcaat aacgacatgg       960
     tgatcggggg atcgctcttc ccccatcgtc cggttcacaa ggtcacgtgg gtctcccgtg      1020
     acggctttac cgaaaatcaa attgaccaca tctgtatcag ccgaaagtgg aaacggagcc      1080
     ttcttgatgt gcggaataaa cgtagcgctg acatcgcatc cgaccatcac ctcctcatcg      1140
     gcgaggtgcg tctgcgcatt gcgcggattc gtcgacagga ggaaagagtc ggacgtcgat      1200
     ttaacacacg ccgactggaa gatgccacag tgaaaaggtc cttcgtcgaa gaactggaga      1260
     ctcktgctgc taatatttcg gaaggtggca gcgtagaaga gcaatggacc gccatcaaga      1320
     atgccttcat cactaccagc gaaaataatc tgggtgagct acgcactcgg agaaaacagt      1380
     ggattaccga tgaaacctgg aggaagatag aggagcggag agaagccaaa gccgcgatag      1440
     agcgggcgaa aaccagagga gccaaggcac tttcccgtca acgatactcg gctctagaaa      1500
     gggaagttaa gcgctcatgt aggcgggaca aacgagcgtg ggcggactcc cttgctgacg      1560
     aaggtgagaa agccgcagca accggcgaca ttcgtcttct ctacgatatc tcacgacgcc      1620
     ttagcggggc aaagatgaat acgacgatgc ccgtgaaaga cacgactgga caactgttaa      1680
     ccgaccccac tgaccagcta aaacgctggt ttgagcactt cgaacaactt ttccaagtgt      1740
     caacccggcc accaacacct cagcatgatc cgcctagggt tcggcgtatt agtcgcgtta      1800
     acaccgaagc tccatcactg catgagatag aaacagccat ccaaagtatg aaatccaaca      1860
     aagcccctgg ggtcgatcgc atatcagccg agatgctcaa agcagacccc gcaatatccg      1920
     ctcaactgtt gcatcaacta ttccgcaata tctgggacac cgcgactttt ccggccgact      1980
     ggatgcaagg cgtgttagtg aaggtaccca aaaagggtga cctcactgta tgcgataatt      2040
     ggcggggcat catgttgcta tgtattgttc tcaaagttct atgcaaagtg atcctaaacc      2100
     ggatccagga gaagatcgat gcgactctcc gtcgacagca agcgggattc cgtgccggac      2160
     gatcctgtgt ggaccatatt gtcacgctcc gtatcatctt ggagcaagtc aatgaattcc      2220
     aagagtccct gtatatggta ttcattgact acgaaaaagc tttcgaccga ctcaatcacg      2280
     aaaatatgtg gggtgccctg agacgcaagg gtgttcctga gaaaatcatc ggcctcatcg      2340
     aagcgcagta cgaggccttt acgtgcagag tattgcacaa cggggtcttg tctgaaccca      2400
     tccgggttgt agctggagtg aggcaaggat gtatactatc accactactg ttcctcatcg      2460
     taattgacga gatcctgata ggcgccattg accgtgaaca aaaccgtggg ctgctgtggc      2520
     agcctattac tatggagcac ttaaatgatc tcgatttggc tgatgatatt gctatactag      2580
     ctcaacggcg ctctgatatg cagagtaagc tagacgatct tgccgaacgc tcctcagcgg      2640
     caggtctcaa catcaatgtc aacaagacca aatcgttgga tgtaaacacg gccggccctt      2700
     ccagcttcac agtagccggg caaacagtgg agaacgtcga aaacttccaa tatcttggta      2760
     gccaactggc gtctgacggc ggtaccaaga tcgacatagg tgcacggatc aagaaggcga      2820
     gggctgcttt tgcgagctta agaaatattt ggaagaacag tcagattagt caacgcacca      2880
     aaattcgaat attcaattcc aatgtcaaat ctgtgctgtt atacgccagt gaaacgtggt      2940
     gtgtatcagc ggagaacact caacggctgc aggtgttcat caacagatgc ctgcggtata      3000
     taattcgggc atggtggcca cacaactgga tttctaatgc tgacctccat cgtcggtgcc      3060
     accagcaacc gatacaaacc gaaattcgac aacgaaagtg ggggtgggtc ggccacactc      3120
     tacgtcgggg cggaaacgaa atctgcaaac aagcgctgga atggaatcca gcaggacatc      3180
     gcagcagagg cagacccaga ggatcatggc ggcgcagcct caacaaagaa ataaaagaag      3240
     tcgacggcaa tttgacctgg ccgcaggtca aggcgatagc tggtaatcgc ccaggatgga      3300
     aatctttcac gtcggcccta tgcaccagaa tgggtgccca ggacccataa gtaagtaagt      3360
     aagta                                                                  3365
//
ID   RTE_Ele4    repbase;    DNA;    INV; 3435 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An RTE clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE_Ele4.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3435
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3435
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >99% identity, and ~100% identical to the original
CC   sequence in [1].
XX
FH   Key           Location/Qualifiers
FT   CDS           298..3417
FT                 /product="RTE_Ele4_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="PHQRDRPSVSWDVKQSWHDGAPARQECWRRPNKPPVK
FT                 NLIANNIGDNTTRNNRQRPTRRNKDYDWKLGTWNCKSLGFAGCDRIIYDEL
FT                 HPRNFDIVALQELCWTGQKVWKSGHRAATFYQSCGTTNELGTGFIVLGKMR
FT                 QRVIGWQPINARMCKMRIKGRFFNYSIINVHCPHEGRPDDEKETFYAQLEQ
FT                 IYDGCSPRDVKIVVGDMNAQVGREEMYRPVIGRNSLHAVSNDNGQRCVNFA
FT                 ASRGMVVRSTFFPRKDIHKTTWRSPDNLTENQIDHVLIDGKFFSDITNVRT
FT                 YRSANIDSDHYLVAICMRSKLSTVTNSRRSRTPRLNIERLRDSEVAQEYAQ
FT                 QLEVALPTEEQLGAATLEDGWRHIRSAIGSTATAALGPAAPNQRNDWYDGE
FT                 CEQLKNEKNAAWARMLQHRTRANEARYKQARNRQNSIFRRKKRHQEERDRE
FT                 AMEELFRAKDTRKFYEKLNRSRKGFVPQADMCRDFDGNLLTNEREVVERWR
FT                 QHYDEHLNGDVASSGGGTEITLGARADDERLPPPDLQEVETEIRRLKNNKA
FT                 AGVDQLPSELLKYGGDALARALHWVISKIWEEEVLPEEWMEGVVCPIYKKG
FT                 DKLDCANYRAITILSAAYKVLSQILCRRLSPIAREFVGQYQAGFMGERATT
FT                 DQIFAIRQVLQKCREYNVPTHHLFIDFKSAYDTIDREQLWQIMHEYGFPDK
FT                 LIRLIKATMERVMCVVRVSGTLSSPFESRRGLRQGDGLSCLLFNIALEGVI
FT                 RRAGIDTSGTIFRKSVQLLGFADDIDIVARNFETMADTYIRLRAEARRIGL
FT                 NINVSKTKYMIARGSREDTARPPPRVHIDGDEIEVVEEFVYLGSLVTADND
FT                 TSREIQRRIVAGNRAYFGLRRTLRSSKVRHRTKLTIYKTLIRPVLLYGHET
FT                 WTLRAEDQRALGVFERKVLRTIYGGVQMEDGTWRRRMNHELHQLLGEPTIV
FT                 HLAKIGRLRWAGHVTRMSDTNPVKMVLENNPTGTRRRGAQRARWVDQVEDD
FT                 LRTLRRMRGWQRAAMDRVEWRRLLRTAEATQALA"
XX
SQ   Sequence 3435 BP; 969 A; 834 C; 967 G; 665 T; 0 other;
     gggctgcaaa acggtgagtc gacaacaagg aaggagcgtt caacacagct ctggtcctca        60
     caagttccta cctcacgctt ccacgggtca aacgatgaca aagaccgcca gctaagggtt       120
     gcgtacttag ctggtagtgc agcctgggca ctgttgtcct tctgacatca gctagattga       180
     ggaggtacgt ctcgagcgtc tgttcaccag gaggtgcggc tcaaacagcg tctgttctgg       240
     tatccagcgg ctgagcaaga aatgctgaat cgcgcacagc taaatccaag gtggtagccc       300
     catcagcgcg atcgtcctag tgttagttgg gacgttaaac agagctggca cgatggcgct       360
     ccggcgagac aggagtgttg gcgtaggccc aataagccac ccgtaaaaaa ccttattgcg       420
     aataacatag gagataatac gacccggaac aatcggcaaa gacccacgcg acgaaataag       480
     gattacgatt ggaaacttgg aacatggaac tgcaagtcac ttggtttcgc aggttgcgac       540
     aggataatct atgacgaact acatccccgt aacttcgata tcgtagcgct gcaggaactt       600
     tgttggactg gacagaaggt gtggaaaagc gggcatcgag cggctacctt ctaccaaagc       660
     tgtggcacca caaatgagct aggaactggc ttcatagtgt tgggcaagat gcgacaacgc       720
     gttatcgggt ggcagccgat caacgcaagg atgtgcaaga tgaggataaa aggccgtttc       780
     ttcaactaca gcatcatcaa cgtacactgc ccacacgaag ggagacccga cgacgagaag       840
     gagacgtttt acgcgcagct ggagcagatt tatgacggat gctcgccgcg tgacgtgaaa       900
     atcgttgttg gcgacatgaa cgcacaggta ggacgagagg agatgtacag accggtgatc       960
     gggcggaaca gtctgcacgc cgtatctaac gacaacggcc aacgatgcgt caactttgca      1020
     gcctctcgtg gtatggtagt ccgaagcacc ttcttccccc gtaaagatat ccataagacc      1080
     acctggagat cacccgataa cctaaccgag aaccaaatcg accacgttct aatcgacgga      1140
     aaattcttct ctgacattac caatgttcgc acataccgca gtgcgaatat agattcggat      1200
     cactacctag ttgctatatg catgcgctca aaactttcga cggtgacaaa ctcgcgtcga      1260
     agccgaacgc cgcggcttaa catcgagcgg ctacgggact cagaagtagc ccaagaatac      1320
     gcgcagcagt tggaagtggc cctaccaacg gaagagcagc tcggcgccgc cactcttgaa      1380
     gatggctgga ggcacataag atccgccata ggtagcaccg caacagcagc actaggtcca      1440
     gcggccccga atcagagaaa tgactggtac gacggcgaat gcgagcagtt gaagaatgag      1500
     aagaatgcag catgggcgag aatgctgcaa caccgcacga gagcgaacga ggcacggtat      1560
     aaacaggcgc ggaacagaca aaactcgatc ttccgaagaa aaaagcgcca tcaagaagaa      1620
     cgagatcgcg aagcgatgga agagctgttc cgcgctaaag acacacggaa gttctacgag      1680
     aagcttaacc gttcgcgcaa aggctttgtg ccacaagccg acatgtgcag agactttgac      1740
     ggaaatcttc tcacgaacga acgtgaggtg gtcgaaaggt ggcggcagca ctacgacgag      1800
     caccttaatg gtgatgtggc cagtagcgga ggtggcacgg aaataacttt gggagcacgc      1860
     gcggacgacg aaagacttcc gcctccagat ctccaagagg tagaaacgga gattagacgg      1920
     ttgaaaaaca acaaagccgc tggagtggac caacttccta gcgagttgct aaaatacggt      1980
     ggtgatgcac tggcaagagc gctgcactgg gttatttcca agatttggga ggaggaagta      2040
     ttgccggagg agtggatgga aggtgtcgtg tgtcccatct acaaaaaggg cgacaagttg      2100
     gattgcgcca attatcgtgc gatcacaatt ttgagcgccg cctacaaggt actctcccaa      2160
     attctatgcc gccgtctatc accaattgct agagaattcg ttggacaata tcaggcagga      2220
     tttatgggcg aacgagcaac aacggaccag atattcgcca tccgccaggt gttgcagaaa      2280
     tgccgcgaat acaatgtacc cacacatcat ttattcatcg attttaaatc ggcctatgat      2340
     acaatcgatc gagaacagct atggcagatt atgcacgaat acggtttccc ggacaaactg      2400
     ataagattga tcaaggcgac gatggagcga gtgatgtgcg tagtccgagt atcagggaca      2460
     ctctcgagtc ccttcgaatc tcgcagaggg ttacggcaag gtgatggcct ttcgtgttta      2520
     ctgttcaaca ttgctttaga gggtgtgata agaagagcgg ggatagacac gagtggcacg      2580
     attttcagaa agtccgttca gttacttggt ttcgccgacg acattgatat cgtagcacgg      2640
     aactttgaga cgatggcgga tacgtacatc cgactaaggg ctgaagctag gcgaatcgga      2700
     ctgaacatca atgtgtcaaa gacgaagtac atgatagcga ggggctcaag agaagacacg      2760
     gcacgccccc cacctcgagt tcatattgac ggtgatgaaa tcgaggttgt cgaagaattc      2820
     gtgtacttgg gctcactggt gaccgccgac aacgacacca gcagagaaat ccagagacgc      2880
     atcgttgctg gaaatcgtgc ctactttgga ctccgcagaa cgctccgatc gagcaaagtt      2940
     cgccatcgca cgaagttgac catctacaag acgctgatta gaccggtact cctctatggg      3000
     cacgaaacat ggaccctacg tgcagaggat caacgcgccc ttggtgtttt cgaacggaag      3060
     gtgttgcgga ccatctacgg cggagtgcag atggaagacg gaacgtggag aaggcggatg      3120
     aaccatgaat tgcaccagct gctgggagaa ccaaccattg tccacctcgc aaaaattggg      3180
     aggctgcggt gggccgggca tgtcaccaga atgtcggata ccaacccggt gaaaatggtt      3240
     ctcgaaaaca atccgaccgg cacaagacga cgtggtgcgc agcgagcaag atgggtcgat      3300
     caagttgagg acgatctgcg gacccttcgc agaatgcgtg gctggcaacg ggcagccatg      3360
     gaccgagtcg aatggagacg tctcctacgt acagcagagg ccacccaggc cttagcctga      3420
     ctggtaaggt aagta                                                       3435
//
ID   RTE_Ele5    repbase;    DNA;    INV; 3277 BP.
XX
AC   .
XX
DT   06-OCT-2010 (Rel. 15.10, Created)
DT   06-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   An RTE clade non-LTR retrotransposon family from Aedes aegypti.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; RTE-4_AAe;
KW   RTE-4B_AAe; RTE_Ele5.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3277
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3277
RA   Kojima K.K. and Jurka J.;
RT   "RTE clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (06-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. This consensus is generated from 30
CC   sequences with >97% identity, and ~99% identical to the original
CC   sequence in [1]. The consensus is ~77% identical to RTE-4_AAe.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..3238
FT                 /product="RTE_Ele5_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="HDVGSATLVRWPIEDSSPTKKGKSRANGLILRQQTRQ
FT                 RIKDNDWKVGSWNVRTLNEPARVGLLARELRNVGVNVAAIQEIRWPRTGER
FT                 EFRAVDPIANTSFKYHIYYSGGDRAERGVGFIVIGKQMKRIIRWKPVSDRI
FT                 CVLRMRGKFFNYSLISIYAPTNDKPDDMKDEFYESLDKAYGECPKQDVKIV
FT                 IGDANAQIGKEDFFRPVIGTESLHSVTNDNGLRLVTFAAARGMAISSTYFA
FT                 RKNIRKHTWRHPSGDACSQIDHVLVDGRHFSDVIDVRTFRGPNIDSDHYLV
FT                 VAKIRARLSSVTSSATHRTLRFNIQRLSTDGVAAQYRQQLDEKLGRVNVAG
FT                 DVDSLWDPIHEAVTTTAREVIGTGQRRRRNDWFDEECQRVTDMKNVARSRM
FT                 LVAGTRQNRERYRAARAEEKRIHRRKKRQHEESVVADAQESMNRNDMRRFY
FT                 ATVNGARHNTVPVPAMCNDREGNLLTDKTAVAARWKEHFQQLLNGENGNVA
FT                 RNRMNIDDDDQAVDPPTIGEVKKAISELKNCKAAGKDEIPVELLKHGSEQL
FT                 YQSIHRVLLKVWEDEELPTGWLDGLIRPIYKKGHRLECANYRGITLLNSAY
FT                 KILSRILFNRLRPLEESFVGEYQAGFREGRSTTDQMFSLRMILDKFREYNL
FT                 QTHHLFIDFKAAYDSVKRNELWQIMSENGFPAKLIRLIRATLDGSKSSVRI
FT                 ADEVSTSFVTLDGLKQGDALSNLLFNIALEGAIRRSGVQRNGTIITRSHML
FT                 LGFADDIDLIGIDRRSVEEAFVPLKRETARIGLTINSTKTKYMVAGRDRVR
FT                 HGGVSAEVVFDGDVFEVVEEFVYLGTLVTCDNDVSREVKRRVAAANRAFYG
FT                 LRNQLRSRSLQTETKFALYKTLILPVALYGHEAWTLKESDRKALGVFERKV
FT                 LRTILGGKLENGVWRRRMNHELYQVYKDANIINRVKYGRLQWAGHLVRMSE
FT                 ERIAKIIFSREPGRGRRLRGRPRIRWLYAVEEDLATLNVRGNWRSFAQDRR
FT                 RWSSTIRPAMA"
XX
SQ   Sequence 3277 BP; 927 A; 722 C; 945 G; 683 T; 0 other;
     accgctagcg catgacggct caccatagta gcatgtccga aagaacttga aactattgag        60
     aaccagagct acaggtccaa agccctgata aaggtggatg gttgtgatgg ctatgaccgt       120
     ggtcatcatg taaagaacaa gcggacgatg ctgtatcgtg tcagcatcga ggaggcagcc       180
     cctctagcac gatgtaggta gcgcaaccct ggttaggtgg cctatcgaag actcttcacc       240
     aaccaagaaa ggcaaaagta gagcaaacgg attgatttta cggcaacaga cccggcaacg       300
     aataaaggac aacgattgga aagttggatc ttggaacgtg agaactttga atgaacccgc       360
     gcgtgttggg ctcctggctc gtgaactgcg gaatgtcggc gtgaacgtgg cagctatcca       420
     ggaaatacgc tggccgagaa ccggagaacg cgaattccga gcggtggacc ccatcgccaa       480
     cacttcattc aagtaccaca tctactacag cggtggcgac agagcagaac gtggagttgg       540
     cttcatagtg attgggaagc agatgaagcg aattattcgg tggaaaccgg taagcgaccg       600
     aatctgtgtg ttgagaatga ggggcaagtt cttcaactac agcctgatca gcatatatgc       660
     gccaacgaac gataagcccg atgacatgaa ggatgagttc tatgagagcc tggataaggc       720
     ctacggagag tgcccaaaac aagacgtcaa gatagtcatt ggcgacgcaa atgcgcagat       780
     cgggaaagaa gatttcttcc gacccgttat tggaacggaa agccttcatt ccgttaccaa       840
     tgataatggc ctgcggctag taaccttcgc tgctgctaga gggatggcaa tcagcagtac       900
     ctacttcgca cgaaagaata tccgcaaaca cacctggcga cacccgagtg gcgatgcctg       960
     ctcccaaata gaccacgtgc tggttgatgg gcgacatttc tcagatgtca ttgatgtcag      1020
     gaccttccga ggccctaata tcgactcgga tcattatctc gttgtagcta aaattcgggc      1080
     gcggttatcc agcgtcacga gttccgcaac acacagaacg ctacgcttca atatacaacg      1140
     cttgtcgact gatggggtag ctgcgcagta ccgtcagcaa ctagacgaga agttgggaag      1200
     agtcaacgtt gctggagacg tcgacagcct gtgggaccct atccacgaag ctgtgacaac      1260
     aacggcgcgg gaagtgatcg gcactggtca acgacgaaga cggaacgact ggttcgatga      1320
     agagtgccag agggtgacag acatgaagaa tgttgccaga agccgtatgc ttgtggccgg      1380
     tacccgacag aacagagagc ggtacagggc agcgagagcc gaagaaaagc gaatccaccg      1440
     cagaaagaaa aggcagcacg aagaaagtgt ggtagctgac gcacaagaaa gcatgaaccg      1500
     aaatgatatg cggagatttt atgcaacggt caatggtgcg cggcacaata ccgtaccagt      1560
     gcccgccatg tgcaatgacc gagaagggaa tttgctgacc gataaaacgg cggtggctgc      1620
     caggtggaag gagcacttcc agcaattgtt gaacggtgag aatggaaatg tagcgaggaa      1680
     caggatgaac atagatgatg acgatcaagc tgtggaccca ccgaccatag gagaggttaa      1740
     aaaggctatc agcgagctga agaactgtaa ggctgctggg aaggacgaga tcccggtcga      1800
     gcttctcaag cacggaagcg agcagcttta ccagtcgatc caccgagtac ttctgaaggt      1860
     atgggaggac gaagaattgc ccaccggctg gttggatggc ctcatccgcc ctatctacaa      1920
     gaaagggcac agactggagt gtgccaatta cagaggaatt accctgctga attcggcgta      1980
     caaaattctg tcgcgcatcc tgtttaacag actgagaccg ctcgaggagt ccttcgtcgg      2040
     cgaataccaa gctggttttc gtgagggccg ttcgacaacg gaccagatgt ttagcttgcg      2100
     aatgatccta gacaaattcc gggagtataa cttgcagact caccatctgt ttattgattt      2160
     caaggcggcg tacgactcag tgaaaagaaa tgagctttgg cagataatgt ctgaaaatgg      2220
     ttttccggcg aaactaatta ggctgatacg tgctacgctg gatggttcga aatcaagtgt      2280
     tcggatcgca gacgaggtgt caacctcgtt cgtgacgtta gacggattga agcagggaga      2340
     cgcactttcg aatttactgt tcaacattgc acttgagggt gctattagga gatctggcgt      2400
     gcaaagaaat ggcactatta tcacaaggtc gcacatgctc cttggctttg cggacgatat      2460
     agacctgatt ggaatcgatc gcaggtcagt ggaagaggcc ttcgtgcctc tgaagaggga      2520
     gacagcgagg ataggcctga ccatcaattc taccaagacg aagtacatgg ttgcaggtag      2580
     agatagagtc aggcatggtg gtgtaagtgc tgaggtagtg tttgatgggg atgtgtttga      2640
     agttgttgaa gaatttgttt accttggaac acttgtgaca tgtgacaacg acgtttcccg      2700
     cgaagtgaaa agacgtgttg cggctgcgaa tagggccttt tacggactac gtaaccagct      2760
     taggtcccgc agcttgcaaa ccgaaactaa attcgccctg tataaaacat tgattcttcc      2820
     ggtggctctc tacgggcacg aagcgtggac gttgaaagag tcagaccgga aagctctcgg      2880
     tgttttcgag cgtaaagtgc tgcggacaat actcggtggg aaactcgaaa atggtgtgtg      2940
     gcgcagacgc atgaatcacg agttgtatca agtgtacaaa gatgcgaata ttatcaatcg      3000
     tgtaaaatac ggcagacttc agtgggctgg tcacttagtg cgaatgtcgg aagaaagaat      3060
     tgcgaaaata atattcagca gggaaccagg tagaggccgg cggcttcggg gaagaccacg      3120
     aatacgctgg ctgtacgcag tggaagagga cctggcgacc ctaaacgttc ggggcaactg      3180
     gagaagtttc gcccaagacc gacgaagatg gagctctaca atacgcccgg caatggcgtg      3240
     atgctacgct gtagccatca aggtatcaag gtaggta                               3277
//
ID   S2_DM       repbase;    DNA;    INV; 1735 BP.
XX
AC   .
XX
DT   07-MAY-2001 (Rel. 6.04, Created)
DT   27-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   S2_DM is a DNA transposon, a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner/Tc1-superfamily; S2_DM; S_DM; TIR; transposase.
XX
NM   S2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1735
RA   Kapitonov V.V.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
DR   [1] (Consensus)
XX
CC   S2_DM belongs to the Tc1 superfamily of DNA transposons.
CC   There are ~10 copies of S2_DM which are ~94% identical to the
CC   consensus sequence. Putatively, S2_DM lost its activity several
CC   million years ago.
CC   S2_DM has 235-bp terminal inverted repeats and it encodes
CC   345-aa transposase (positions 403-1437). The S2_DM consensus
CC   sequence is 70% identical to S_DM. Their transposases are also
CC   70% identical to each other.
CC   The S2_DM transposase is interrupted by stop-codon at its
CC   C-tail (position 1384). Since the tail is conservative in
CC   Tc1-like transposons from different species, most of genomic
CC   S2_DM copies has been transposed as non-autonomous elements.
XX
FH   Key           Location/Qualifiers
FT   CDS           403..1437
FT                 /product="S2_DMp"
FT                 /note="transposase"
FT                 /translation="MPGKRLSFEVVQLIFYNHHLGKSVKELSEMFSASRRT
FT                 IYNVINRAKNEGRLDSKCGAGRKNKISNRSDRLIMRKIYENPQISLRTVAK
FT                 ELKEECDLDVSHETVRQAILRHKYHSRVARKKPMLSAINIEKRLTFAIKMQ
FT                 HQPEDYWNNVIFCDETKMMLYYNDGPNRVWRKALTALENRNIIPTVKFGKL
FT                 SVMIWGCISSRGVGDLAFIENTMNAEQFLNILKCNLTSSAKKFGFYKNNRP
FT                 DFKFYQDNDPKHKALNVRNWLVYDCGKVIDTHPQNPDLNPIENLWVHLKKK
FT                 VAKRSPNNRAALKAAILEEWHKIPQQYDLEKLFFQ*KKRLQYVINAKGMHT
FT                 KY"
XX
SQ   Sequence 1735 BP; 597 A; 279 C; 317 G; 542 T; 0 other;
     cagtttgtca agaaattgtt tgcacaatga aaataaattg tattttctgc ctttcaatgc        60
     aaaattaagg gctttttgtt taccttatgg atttttttta atttacattt atttgtttat       120
     atgtttttta tcaatatgta aaaaaataat aacaaaacta ttaacaatga acgagaaaaa       180
     caactaaatc caagtttgca cagatttgac actgtcaaga aattgtttgc acacttttct       240
     tttgttttct attttgctcc tattccgagg aatttcgata atcaaacggt acataatcgt       300
     catttacgct ttatgcgttg tgtgggtggc cgatttatat gcatttggtt gtgaaatttg       360
     ccaaagtgat cattgttcca gttagttttg tgaaatttag aaatgcctgg caaaagattg       420
     agttttgaag tagttcaact gattttttat aatcaccatt tgggaaaatc tgtcaaggaa       480
     ttgtcagaaa tgttttctgc atcgcggaga acaatttata acgttattaa tcgcgcaaaa       540
     aacgagggca gattggattc aaaatgtgga gcaggacgta aaaataaaat ttccaaccgt       600
     tcagaccgac ttattatgcg aaaaatttat gaaaatccgc aaatatcctt aagaactgtt       660
     gctaaggagc ttaaggagga gtgcgatctg gatgtgtcac acgaaacagt gcgccaagcc       720
     atactccggc ataagtacca ctcacgggta gcaagaaaga aaccgatgct gtcggcaatt       780
     aacatcgaaa aacggcttac tttcgctatc aaaatgcaac atcagccaga agattactgg       840
     aataacgtaa ttttctgcga cgaaaccaag atgatgttgt attacaacga tggacccaac       900
     agagtgtggc gtaaggcgct aactgcgctg gagaaccgca acatcatacc gacagtcaaa       960
     tttggcaaac tgtcggttat gatttgggga tgcatatcta gtcgaggagt tggagatttg      1020
     gcattcatag agaacacaat gaatgcagaa caatttttaa acattttgaa atgcaatctg      1080
     acatccagcg ccaaaaaatt cggtttttat aagaacaata gacctgattt taaattttac      1140
     caggacaatg accccaagca taaggcgctt aatgtgcgga actggctcgt ttacgactgc      1200
     ggcaaggtca tcgatacgca tcctcagaat ccagatctga accctataga aaatttgtgg      1260
     gttcatttga agaaaaaagt ggcaaaaagg tcaccaaaca accgagcagc actgaaagct      1320
     gctatactag aagagtggca taagatccca caacaatatg atcttgaaaa gttatttttt      1380
     caatgaaaaa aacgtctaca atatgttatt aatgctaagg gtatgcatac aaagtattag      1440
     aattacctca agttattata atttgttata aactataagt ctaagatagc ttaagtactt      1500
     tgtgcaaaca atttcttgac agtgtcaaat ctgtgcaaac ttggatttag ttgtttttct      1560
     cgttcattgt taatagtttt gttattattt ttttacatat tgataaaaaa acatatgaat      1620
     aaatagatat taataaaaaa aattcatgaa ttttaataaa aggcctttat atttttgcat      1680
     tgaaagtcaa aaatacaatt tattttcatt gtgcaaacaa tttcttgaca aactg           1735
//
ID   Sake2_BM    repbase;    DNA;    INV; 3192 BP.
XX
AC   .
XX
DT   30-APR-2010 (Rel. 15.07, Created)
DT   30-APR-2010 (Rel. 15.07, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon - a consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   AP-endonuclease; Sake2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3192
RA   Jurka J.;
RT   "Non-LTR retrotransposons from Bombyx mori.";
RL   Repbase Reports 10(7), 1058-1058 (2010).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1526..2893
FT                 /product="Sake2_BM_1p"
FT                 /translation="MKYSKIIPLFKSGSTFDPSNFRPISVLPTLSKIFEKI
FT                 ILEQLLNHFNSNNLLHNKQYGFTRGRSTIDAGVDLIKNIFQAWEESHNALG
FT                 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGKR
FT                 SSGVLLNMGVPQGSILGPFLFLVYINDLPKFIETRHEVVLFADDTSLLFKI
FT                 KRXLEDYDDVNDAISRVVHWFSVNNLLLNNKKTKCIKFTTPNVRQVDTNIT
FT                 VSGETLELVDSTVFLGITVDSKLQWGPHICKLASRLSSAAFAVKKIRTYTN
FT                 EDTARLVYFSYFHSVMSYGILLWGNAADVETIFILQKRAIRAIYNMHPRES
FT                 LRDKFKEIKILTLASQYIFENLLYVRKNIEEFPRVCDLHNVNTRNKHRLAL
FT                 PAARIKKISNSFRGLGVQLFNKIPXNVQLLPVHRFKKTVKERLCNKAYYKV
FT                 KDYLLDGTTWE"
XX
SQ   Sequence 3192 BP; 770 A; 800 C; 806 G; 796 T; 20 other;
     ttttttttcg ggccggggnc cgnacctcct acgaggcgnc cgggcntcgg gggcgcgcgg        60
     ggtatgtgag actcaacgat ctgcaggtgt tgagagcaga ccgcgggccc aagganttta       120
     gggcccaccc actaaangac tcccntgcac tcttacaccc ggcgtccgat cccctccggg       180
     gtcagaaccc ggncggggta ggggggttnc cgcggtcaac actacaacca nacacgcggc       240
     ccaccccgag gacgcccggc cgacgggccn tcgaggcgag tcganggccn gcggcgtcgg       300
     ccgcctcggt acggcggccc gccaggcggc ccgggcggcg ccgctggtgt cccgggatac       360
     cccgccgggc cggaaccggg ggtcgggacg cgatacgccg ccgaccgggt tgctccgttc       420
     cgcggcctcc ttcggcgaga cggtgcactc gcagaagtcg agnatcgcct tccaggactc       480
     atcgccgccg agcatcgcgg ccgcgacaag tcccgtccta tttttgcgac gaggacgcgg       540
     cgccgcccca gccatgcggg gcagtacgcg agcgtatgct ccgccgtgtc cccgtcgcag       600
     ccacggcggt ggcactccgc cgtcggctcc ctccgagcgg tgcaggtacc ggccgaagca       660
     ccntgccggc gagcacctgc gtcaaccgga agccgagacg ccctcggtca cggttcgccc       720
     attccgcgac gaccgggcgc accgcctcga cggtccgggc gcaccggccg acggtccgcc       780
     gagcggcggg accgcgcctc cggcgcggac cgcgcctccg gcgctgaccg ccccttctcc       840
     gggacgcggt ccgcccctgg cgcggaggtc acatcgccac gcgtagtcgg cggcgagcgc       900
     ctccgcctcc aggtcccagg gaggcgtccc ggcgagnacg cacgccgcct cgaagtagac       960
     ggtgcggtan ccacggatcg gtcctgaccg cgattgcgcg ctgcgggcgt cgcggcggcc      1020
     gcgctgctcc cgcgagccag ggcgcggcac cacacgggcg ccccgtatag cgccatgaac      1080
     cccaccaccc ccgcgtagag acgacgcact accgcgtcgg gccccccgac gttgggcggg      1140
     agccggccga gccggccgtc cccatcagcc gagggaccag cttctcgaag cgagcgcgaa      1200
     agttccaacg accgtccagt ncgaggccga ggtaccgcaa cccggctacc ccgacctcga      1260
     cgcggacgcc tccaaccacc acgtgggccc cgggcggcgt cgacatgcca gcgctgcgaa      1320
     acgcagggcg ggtttcccga actttaagtt cacaaatatt gatataaagg acataattga      1380
     taatttcaag ctcattaata ttaagaaaac tggtgattta tggggaattt caattaaggt      1440
     tataaaatcc attattgata taatcgcacc ttaccttgct acaatattta atgactgtat      1500
     tgattgtggt gtgtttcctg atctaatgaa atatagtaaa ataatacctt tgtttaaatc      1560
     tggtagtact tttgacccct ctaactttag gcccatttca gtactaccta cattgagtaa      1620
     aatttttgaa aaaattattt tggaacaact tttgaaccat ttcaattcca ataacctgct      1680
     tcataacaaa caatatggat tcactagagg tcgttcaact attgatgcag gtgtagatct      1740
     tattaaaaat atttttcagg cttgggagga gtcgcataat gcccttgggg tattctgcga      1800
     cttatctaaa gcttttgatt gtgttgagca taatacattg ttgaggaaat tacaccatta      1860
     tggtattagg ggcgtttcat tagaacttat taaatcttat ttatccggaa gaatccaaaa      1920
     ggtagacgtt aaaggaaaga gatcttccgg tgtcttactt aatatgggtg ttcctcaggg      1980
     ttccatattg ggtcccttcc tatttcttgt gtatatcaat gatttaccaa agtttattga      2040
     aacccgtcac gaggtcgtat tattcgctga cgatacatcc ttattgttta aaattaaacg      2100
     acanttggaa gattatgacg atgtgaatga tgctatctcg cgcgtggtac attggtttag      2160
     tgttaataat ctgttattaa ataacaaaaa aacaaaatgt ataaaattta ccacacctaa      2220
     tgttagacaa gtagacacta atattactgt aagtggagag acactggagc ttgtggattc      2280
     gacagttttt cttggtataa cagttgattc caagctgcag tggggtcctc acatatgcaa      2340
     gttagcgagt agacttagtt ctgcagcgtt tgcggtaaaa aaaatacgaa cgtatactaa      2400
     tgaagatacg gcacgtctgg tttatttcag ttattttcat agtgttatgt cctatggcat      2460
     tttgctatgg ggcaatgctg ccgatgtcga aacgattttc atcctgcaga agagggctat      2520
     tcgtgctatt tataatatgc acccgaggga atccttgagg gacaagttta aggaaatcaa      2580
     aattctaact ttagcgtccc aatacatttt tgaaaattta ttgtacgtgc gtaaaaacat      2640
     tgaagaattc cccagagtct gcgatttgca taatgtgaac actaggaaca aacataggct      2700
     tgcgttgccg gcggctcgaa ttaagaaaat aagcaactct tttagggggc tgggtgtaca      2760
     acttttcaac aagatcccac naaacgttca actactacct gttcatagat ttaagaaaac      2820
     tgtcaaggaa cgtttgtgca acaaggcata ttataaagtt aaggattatt tactagatgg      2880
     cactacgtgg gaatgaggcg ttcgctcctg gccttttcat ttttcattat tattattatt      2940
     ttttaattgt attttttgac ttgttttttc gtttattgta aatattttta cttatttaaa      3000
     aaaaaagaaa atatttgaga aaaaacaaaa aaaaaagccc gctgagtttg tttcgccggt      3060
     tcttctcagg actgtggctt tttttggaac cggtggtaga gttaacattg ttatttatat      3120
     tttgacattc aacaagtgtg ttatactgac atctaagttg aaataaatga ttttgaattt      3180
     gaatttgaat tt                                                          3192
//
ID   Sake_BM     repbase;    DNA;    INV; 5140 BP.
XX
AC   .
XX
DT   17-FEB-2006 (Rel. 11.02, Created)
DT   30-APR-2010 (Rel. 15.05, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon Sake_BM - a consensus.
XX
KW   Daphne; Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; reverse transcriptase; LTR retrotransposon;
KW   AP-endonuclease; Sake_BM.
XX
NM   Sake_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5140
RA   Schon I. and Arkhipova I.R.;
RT   "Two families of non-LTR retrotransposons, Syrinx and Daphne,
RT   from the Darwinulid ostracod, Darwinula stevensoni.";
RL   Gene 371(2), 296-307 (2006).
XX
DR   [1] (Consensus)
XX
CC   Sake is a non-LTR retrotransposon from the domestic silkworm,
CC   Bombyx mori, and is a member of the Daphne clade, which is a
CC   sister clade to the L2 clade, and includes elements from both
CC   protostomes and deuterostomes. The full-length consensus sequence
CC   was assembled from 500 contigs in the B. mori (strain Dazao)
CC   genome assembly at NCBI. The divergence of individual copies from
CC   the consensus is 1-5%. Sake codes for two overlapping ORFs: ORF1
CC   with a CX4CX10HX7CX8CX13LX6LX6L motif and two coiled-coil
CC   domains, and ORF2 containing the AP-endonuclease and reverse
CC   transcriptase domains. The 5' UTR of Sake is 290 bp in length,
CC   and the 3' UTR is 240 bp in length and ends with a (TTTGA)
CC   microsatellite sequence. The complete 5 UTR region is found in
CC   ten different contigs, indicating that there may be at least ten
CC   full- length copies of Sake in the B. mori genome. None of the
CC   assembled contigs contain the element in its entirety, although
CC   the low level of sequence divergence may indicate recent
CC   activity.
XX
FH   Key           Location/Qualifiers
FT   CDS           290..1933
FT                 /product="Sake_BM_1p"
FT                 /translation="MMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESE
FT                 QNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKLQDTINTFSQCSDEF
FT                 CDSLKITAELRHKLAEADDCISDLRSELCKLKEQQPQSLYSELVKSEPSLV
FT                 AVDTALNFDITTIDLTGSDAETSERSQLVLSKNKVRKYVKINKLIYKTQRK
FT                 LRNYKSQEYIKFICKQRTSLSHQVAVLTEQSQQIHHKHMEEIECLSTQINN
FT                 LKSSLENITLNYELAQRDISEHVLAMDNLIDTCNYNQQRFDSLTMQYAECK
FT                 CSASGCQELPHVEIQKHNVSILSVLESQSNDIMKAAPICIPTTASSQVSRE
FT                 DKIKIKIFSDELGKQMGVALHDLCFGQHVINYCMPGANPAQIFDKILNTTH
FT                 CLNTVIIIMLGRRENVNQKQILHYVEQVNMLNIKKIIMFTFPYLQDLPTEN
FT                 KIRFNINNAIYNAFDNNNCILTSKKYAFKLIDINNIIKFRYLRTSKNDIFK
FT                 LSNKNFRQVATSLQYFIHNFLAINLAKKIPASIEQEKNMTCFKTLESASNL
FT                 N"
FT   CDS           1906..4878
FT                 /product="Sake_BM_2p"
FT                 /note="9-aa overlap; AP-endonuclease/reverse
FT                 transcriptase."
FT                 /translation="DFGICFQFKLISKTKESHSCNYKSINTTTRLYPSKDV
FT                 NVSIINIFNLVHQNLQGMMGKELEIEMFLNMHNINVFCVTEHWFRNYELLF
FT                 NFNDHQLSSSFCRENAIRGGSLILVSKCLKCKERKDVVALSVERIIEISCV
FT                 ELEHLIVVCVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDFNINLLE
FT                 NTNTTIRFRTLLKSYNLPNLFLEPTRTTTTSATCLDNIFTNVTPINKKIIN
FT                 QLTSDHSGQFVSFESNMNSKDKNTLVIVPINKKRIEKFRNNIKQEHSEIIY
FT                 NKNPNLSYQNMFERINLVFTDVFIPKTVTLKNKTVFSEWATTGVYKSRKKL
FT                 YDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLIKNAPDKIKM
FT                 TWNIIGRESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTT
FT                 SLNSSPTAAEILLHNHVNKCNEIFKFKKINSSNIIKSFNSLNVKNTADLWG
FT                 ISVKVLKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDP
FT                 SNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAG
FT                 AYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALE
FT                 LITSYLSGRIQTVDVKGNRSSGTLLKMGVPQGSILGPFLFLIYINDLPSFI
FT                 ESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKK
FT                 TKCIKFTLKCIKPSLNVRQVDSNVIVSEESLELVESTVFLGITVDSKLQWG
FT                 PHIHKLASKLSSAAYAVKKIRMLTNADTARLVYFSYFHSVMSYGILLWGNA
FT                 ADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVR
FT                 KHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQD
FT                 VQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE"
XX
SQ   Sequence 5140 BP; 1817 A; 773 C; 878 G; 1672 T; 0 other;
     tttttttggt cggtaggttc ggttgtgttc ggttcgattt ctctgctccc gtaaataaat        60
     taattaaaaa taaactaaca cttcataata tcattaaaac atatcaaagt agtgttaaag       120
     gtgtataaat aagtaaacta tattataaat agtgctttaa aacgttattt aattgattgt       180
     taacgttata atattgcttg gtgagtgtgt aatattttgt aatttgaggg taatctgacc       240
     ggcaacttcg taaattttct ttacatattt tattgtaatt tattttaaaa tgatgactcg       300
     cagcatcaaa tctcgtcagg ttgatgaaca gcttcgtatt gctttagaac aattaaaaaa       360
     tactcgcgaa aaatatgata tacttttaca agaaagtgaa caaaatgaag aggagatgct       420
     gtcagtcatc tctaagaata ctgaccttaa aaaacaattg tctcagctct tcattgaaca       480
     cagtgaagct cttgagatca accagaagtt gcaggatacg attaacacct tttctcaatg       540
     cagtgatgaa ttttgtgatt cattgaaaat caccgctgag ttgagacata aattggctga       600
     ggctgatgat tgtatttctg acttgcggtc agagctatgt aaacttaagg aacagcagcc       660
     tcagagctta tattcggaac tggttaagag cgaaccctct ttggttgctg tagatactgc       720
     cttgaatttt gacataacta ctattgatct gactggtagt gatgcagaga cctcagagcg       780
     ctcccagtta gttttaagta aaaataaagt aaggaaatat gttaaaatta ataaattaat       840
     atataagact caacgtaaat tgaggaatta caagtctcag gaatacatca agttcatttg       900
     caagcagaga acttcacttt cacaccaggt tgctgtattg actgaacaga gtcaacaaat       960
     tcatcacaaa cacatggaag aaatagaatg tttatctaca caaataaaca atttaaagtc      1020
     aagtttagag aacattacat taaactatga actagcacag agggacatta gtgagcatgt      1080
     gttggcaatg gacaatttaa ttgatacttg taattataat caacagcgtt ttgactcttt      1140
     gacaatgcag tacgctgaat gtaaatgctc tgcatcgggt tgtcaggagc taccacatgt      1200
     tgaaattcaa aaacataatg tgtctattct ttcagtgcta gagtctcaaa gcaatgatat      1260
     tatgaaggca gcacctatct gtatacctac tactgcatct tcacaagttt ctagagaaga      1320
     caaaattaaa attaaaattt ttagtgatga gctggggaaa cagatgggtg tggcattaca      1380
     tgacctttgt tttggacaac atgtgattaa ttactgtatg ccaggtgcta atccagcaca      1440
     aatatttgat aagattttaa ataccacaca ttgtctaaac actgtcataa taattatgtt      1500
     agggaggaga gaaaacgtta accaaaaaca aattttgcat tatgttgaac aagttaatat      1560
     gttaaatatt aaaaaaatta ttatgttcac ctttccttac ttgcaggact tgccgacaga      1620
     aaacaaaatt agatttaata ttaataatgc aatttataat gcttttgata ataataactg      1680
     catcttgaca tccaaaaaat atgcatttaa attaatagac ataaataata taataaaatt      1740
     tagatattta aggacatcaa aaaatgacat atttaaatta agtaataaaa attttagaca      1800
     agtagcaaca tcgctacagt attttataca caatttccta gctataaatt tagctaaaaa      1860
     aatacctgct tctattgagc aggaaaaaaa tatgacatgt tttaagactt tggaatctgc      1920
     ttccaattta aattaattag taagacaaag gagtcacact cttgcaatta caaatcaatt      1980
     aatacaacaa ctagattata cccatcaaaa gacgttaacg tttcaattat taacatattc      2040
     aatttggtgc atcaaaattt acaagggatg atgggtaaag agctagaaat tgaaatgttt      2100
     ttaaatatgc ataatattaa tgtattctgt gtcactgagc actggtttag aaactatgaa      2160
     ttattgttta attttaatga tcaccagttg tcaagttcct tctgcagaga gaacgctatt      2220
     cgcggtggct cactgattct cgttagtaaa tgtttgaaat gtaaggaacg aaaggatgta      2280
     gtggccctct ctgttgagag aattattgaa atttcctgtg ttgagcttga gcacctcatc      2340
     gttgtctgcg tctacagacc tcctgatgcg ttatatgatt cttttgaaaa tattttggaa      2400
     aatgtattgc taaagctttc tgtctctaat aaacaaattt ttgtatgtgg tgattttaat      2460
     attaatcttt tagaaaacac aaataccact attagattca gaacattgtt aaagtcatat      2520
     aacctcccaa acttattttt agagcctact aggacaacga ccacatcggc aacatgttta      2580
     gataacatat ttacaaatgt aacaccgatt aacaaaaaaa ttattaatca gttaacatca      2640
     gaccatagtg gacaatttgt gtcttttgaa tctaatatga attctaaaga taaaaatact      2700
     cttgtgattg ttcctattaa taaaaaacga attgagaagt ttagaaataa tattaagcaa      2760
     gaacattcag aaattattta taacaaaaac ccaaatttgt cataccagaa tatgtttgag      2820
     agaattaatt tggtctttac tgatgtattt attcctaaaa ctgtaacatt aaaaaacaaa      2880
     acagtgttca gcgagtgggc caccaccgga gtgtacaaaa gtagaaaaaa gttatatgat      2940
     ctgtactctg aaaaagctta taataatgat gaaacatttc atcaatatgt caggaactat      3000
     tcaaaactat ttagaaaagt ttgtttagcg gcaaaatctt tacatttaag tgatttaata      3060
     aaaaatgccc ctgacaagat aaagatgact tggaacatca ttggtagaga aagtggaaaa      3120
     gtcagaaata gccaccaaga attctcatta aaaatagatg ataaattggt aactagtcat      3180
     gaagatgtgg ctaatgcttt tgaaaagttt ttctctgaca ttccagtttc aactaccact      3240
     tctctaaatt catcccccac agcagctgaa atattattgc ataaccatgt caacaaatgt      3300
     aatgaaattt ttaaatttaa gaaaattaat tcaagcaata taataaaaag ttttaatagc      3360
     cttaatgtaa aaaatacagc tgacttgtgg ggaatatcag taaaggtttt gaagtctgta      3420
     atagacatta ttgctcctca tcttgttagt atttttaatg attgtattag gtgtggtgta      3480
     tttcctgact taatgaaaca tagtaaagtg attcctcttt ttaaatctgg tagtactgat      3540
     gacccctcta actatagacc tatttcagta ctccctacgt tgagtaaaat ctttgaaaaa      3600
     attattttga cacaactttt agaacatttt aattcaaata acctgcttca taataaacaa      3660
     ttcgggttta ccaggggtcg ctctacaact gatgcaggtg cttatctagt caaaaatatt      3720
     tttaaatctt gggaggaatc gcatgattgt cttggaattt tctgtgactt atccaaagca      3780
     tttgactgtg ttgaacatga aacattggtg aggaaactac atcactatgg tattagggat      3840
     ggtgcattgg aacttattac ttcctattta tcaggaagga tacaaacagt agatgtgaaa      3900
     ggtaatagat cttcaggcac cttgttgaaa atgggtgtac ctcagggttc cattttgggt      3960
     ccttttttat ttctaatata tataaacgat ttacctagtt ttattgagtc ccgacacgag      4020
     gtcgtattat tcgcagatga tacatcttta ttatttaaaa ttaaacgaca attacaagtc      4080
     tatgacgaag tgaatgatgc gatttcgtgt gtggttcatt ggttccgtat caataaccta      4140
     ttattgaata gtaagaaaac taaatgtatt aaatttactt taaaatgtat taaaccatct      4200
     ttaaatgtga gacaagtaga tagtaatgta attgtttctg aggaatcatt ggagcttgtt      4260
     gagtcaaccg tatttcttgg tataacagtg gactccaaac tgcagtgggg acctcatatt      4320
     cataaattgg cgagtaagct cagctctgca gcatacgcag taaaaaaaat tagaatgtta      4380
     acaaacgcgg acacggctcg tttagtttac tttagttact tccacagtgt catgtcctat      4440
     ggcattttgc tatggggcaa tgcggccgat gtagaaatga tatttattct gcagaaaaga      4500
     gctatacgtg ctatttataa catgcactca agggaatccc tgagggagaa atttaaagaa      4560
     attaaagttc tcactatgcc atcccagtac atttttgaaa atttgatgta tgttcgtaaa      4620
     catattgagg agtttcctaa aatgtcggac atacataata gaaatactag gaacaaacac      4680
     aagcttgttg tgccgatgag taggttacat aagatacgaa attcattcgg gtgtttgtct      4740
     gtgcgcctgt acaacaaaat cccacaagat gttcagaacc tacatataca taggtttaag      4800
     aaaactatta aagaacatct gtgcaataaa gcttactata aagtcaatga ttatctagaa      4860
     gattgcacaa agtgggaatg agttgctcgc tccgggcatt tcaatattgt agtaattgtt      4920
     atgttattat actcatggta aaaatgaata tttaaaaaaa cctaatatta aaaaaaatat      4980
     ctaatattta aaaaaaaaaa acatgcccgc tgagtttctt gccaattctt ctccggacgg      5040
     aggctagttc ttgtgaattg gcggtagttc ttttgacgtt caacaagtat gtactttcat      5100
     ttatgtggaa taaaaaattt tttgatttga tttgatttga                            5140
//
ID   SAL_CL      repbase;    DNA;    INV; 651 BP.
XX
AC   X95597;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   C.luridus Sal(lur) tandem repeat.
XX
KW   SAL_CL; Sal(lur) element; tandem repeat.
XX
OS   Chironomus luridus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RA   Ross R., Hankeln T. and Schmidt R.E.;
RT   "Complex evolution of tandem-repetitive DNA in Chironomus
RT   luridus.";
RL   Unpublished.
XX
DR   Genbank; X95597; Positions       1     651.
XX
SQ   Sequence 651 BP; 231 A; 95 C; 107 G; 218 T; 0 other;
     gtcgacttac taaaaccgtc gtaacttttt attgtggaac tatattggac aatgtttata        60
     cagttttaaa aactacaagc caagagctac atgctagtat ggttctaccc cctagaactc       120
     ggcgatctaa gacacttgcg gcatgtttga agatattttt cctagaattt tcacacatat       180
     cctaccatat cagtaccaaa actataaagt ttgagccttt cgaaaagctt gtaaagaact       240
     tttggttctt attcttcgaa atcgaaaaat aagaacgagc ttttttctgt ttgccaacat       300
     tggattgtaa tataattaag catttttgtg gttctaaaat gctaaaatat tgtattgtca       360
     tcgggaatac acatgtaaaa aaaatttcag ctcaattgga gtagtagagt ggtcgaaaaa       420
     tcaatcgcaa gatttgacca agaaagacag aaagacagaa agacaagaaa gcaagttaag       480
     aaaaacgtgg taataatgct tataaagata aaatttcgat tttttttgaa aattcttcac       540
     agtttgtttt taaatgctat ttgtgaatgg aaaacatcaa aaaacatgtt tgaagttatt       600
     aatttgtatt ttttataaga aattttagtt tctgcctata tattcgtcga c                651
//
ID   SAR2_DM     repbase;    DNA;    INV; 646 BP.
XX
AC   .
XX
DT   15-APR-2009 (Rel. 14.04, Created)
DT   15-APR-2009 (Rel. 14.04, Last updated, Version 2)
XX
DE   D.melanogaster untranscribed DNA repeat.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; Repetitive sequence;
KW   satellite related repeats; SAR_DM; SAR2_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-646
RA   Jurka J.;
RT   "A satellite repeat from D. melanogaster.";
RL   Repbase Reports 9(4), 741-741 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 646 BP; 246 A; 88 C; 88 G; 210 T; 14 other;
     ttggacaatt atttttaatg ytatggagaa aatactgatt attttttacc gaaaataaac        60
     aaaataaaaw ttgccaaaaa tctgatattt acaaatggar ttttttccat aacttggcta       120
     aaaatggtcw tacagctaaa ataatgactg ttttgwacag ctaataacca twgctaacta       180
     tccgtatcac tttttgaakg attttgraaa ataaawtttt tggcaaattt tcgcattttt       240
     ggtaaggggt aacatcatca aaatttgcga aaaatggcaa aaaattagaa tttccatttt       300
     tgaacgcagt tcgattggga atttaattac gagctcaacg aggtatgaca ttccattttc       360
     ggacaattat ttttaawgtt atggcaaaaa aacagattat tttttaccga aaataaacaa       420
     aataaaawtt gccaaaaatc ggatatttac aaacggrgtt ttytccataa cttggccaaa       480
     aaaggtataa cagcttaaat aaagactgtt ttgtactgcc aataaacata gctaactatc       540
     cgtatcacta tttttattat aatcaaaaac aaaaatttta acacattttc gcatttttga       600
     taaggggtac catcattaaa atttgcgaaa aatggcaaaa aawttg                      646
//
ID   SART-1B_HMM repbase;    DNA;    INV; 6010 BP.
XX
AC   .
XX
DT   08-FEB-2013 (Rel. 19.03, Created)
DT   05-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-1B_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-6010
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 759-759 (2014).
XX
DR   [2] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   ~98% identical to consensus. Some copies follow (TTAGG)nTT and
CC   some are followed by AGG(TTAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..2531
FT                 /product="SART-1B_HMM_1p"
FT                 /translation="MGVSLVHCYGHGLGEHTPTEKPHCGTVTNMSDKQNXN
FT                 SLPQEGSGLYEAGESLRATARKPRESGGGQPCRYVAGEGPEMGGVEGVPGK
FT                 GGEVGVPVTGGVEMPVEGGELQETVEVLGEVPHNSGGVLKEARVVVERLDL
FT                 SEGVSIASDGARSRRESISSAGRFWGVPGSKGSDTESLTSVGSRSKTVRAS
FT                 FLKDGRKRPRRRSDESGSSGEGVSDRPAPKIAAGRRGKGRPTTTGLCEVQA
FT                 EARKAKLEERRLRAEEEVAQRTLAVQSNTNLALSSMSLLSDMDLEEXRLTS
FT                 DLKGQVAESLAIIQKVAXKSGNLKGTFTKALKEAAKSIAVAVDTLAQRTVT
FT                 EEVATLRAHNTKLQQEMLDMQRQVSLLRADLDRSRPQERSAEQQVHKRPDK
FT                 PSRNEKSGXPDELARXIMIQVGTMVSARLEGLEDRLLPAKRLRPPLASDRT
FT                 PANVASTSATSATEARVTTLMPPANPAPTKGQKPAKGKGKGKGKSNKAQAA
FT                 KAPEPRPLPPAPANTNEGWNVVARKGKKKKGXAAQQXPKGRKARPXSAPKA
FT                 PRLRPPRSSVVALKLQPGANKEVTYKDVLTQIKEKVVLEDLGITDVRFRVA
FT                 STGARLLELPGVNTGEKADVLAQHLRNVLNAGDVQVSRPTRCAELRVCGLD
FT                 DSVTSEEVAAAVSRAGGCDASAVKVGEIRQDRNGLGTAWXRCPVAAAKKVS
FT                 GGRLLVGFVSARVQLLQPRVLRCFRCHEVGHVAANCTSDKDRSAHCYRCGK
FT                 PGHKQSGCSASAHCPICEDAKRPADHLAGGAACAKMCAQSKKRRGAARRTS
FT                 RSRPEAPTQGEELQHMEHQ"
FT   CDS           2534..5665
FT                 /product="SART-1B_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MALHVLQANINHCARAQDLLVQSLVQWSIQVAVVAEP
FT                 YSIPARDNWVADNTGVVALVTQIAAGSPPFSRVEKGAGCVAAHVGDLVVIG
FT                 VYFSPNRTLAEFEEYLIRLGEMVERHRAAEVLVAGDLNAKSSVWGSARTDV
FT                 RGATLEEWIVATGLSVLNRGTTNTCVRRQGGSVVDITFASPVLARRVQGWR
FT                 VLNDVETLSDHLYIQYEISTHSAAQSAPSPTSGEFGPRWRLGCLDRELLEE
FT                 AAIVQAWLPQSLASVEDAATWAQRAMTRICDASMPRSRHRPQRRQVYWWSG
FT                 EIAQLRVTCIEARRQYTHYRRRVRREEEEEERRYRTYVEARKALQEEIGRS
FT                 KAESNDRLIAGIDGDPFGTPYRMVCGKLRTWAPPLTQSLQPDVLRGVLTSL
FT                 FPQRASFTPPTMARPVAQEEEVDSVAPPVDEKELEEALRRSRLKSTAPGLD
FT                 GVPGRALTLALNILGPRVRGLFSACLAQAIIPQRWKTGRLVLIKKEGRPAD
FT                 SATAYRPIVLLSEIAKLFERVVARRLQHHLEGTGPDLSDHQYGFRRGRSTV
FT                 DAILEVKSHAQDAVALGDGVLAVSLDIANAFNSLPWPCIKEALLYHRVPPY
FT                 LRRVIGAYLSGRSVTFPAPGGGWEEYEVSAGVPQGSVLGPILWNIGYDWVL
FT                 RGGTLRGIKVLCYADDTLVLAQQRTYREAAVLATAGVAEIVGRIKRLGLEV
FT                 ALNKSEALYFHAPRKGPPPDAHIVVGGVNIDVKRSMKYLGLVLDGRWSFRG
FT                 HFTSLAPKLMKTAAALARLLPNVDGPSASSRRLYTGVVRSMALYGAPVWAD
FT                 ALDRHNITLLRRAQRVMAIRAIRGYRTISGEVACVLAGVMPWDLDALSLAS
FT                 VYCRRRGLASGEPASPARAEEEREAALEVWESRLATPSAGRLTIEAVRPVF
FT                 RQWLARRHGVLTFRTTQVLTGHGCFGGYLCRIAGREPDARCHHCDDCLDET
FT                 AQHTLEVCXAWASQRRALRDVIGDDLSLPAVVKAMAGSETSWDAXSSFCEA
FT                 VVLEKESAERAREAFAEVAIRRKRPGRRRAAHDRRLPP"
XX
SQ   Sequence 6010 BP; 1266 A; 1650 C; 2017 G; 1047 T; 30 other;
     aaaccactcg cacttgcggg cgagtggacc gggaatttat tcccggcgcg gaccaaaacc        60
     agctaggcat gggcgtgtct ttagtccatt gttatggaca cggcctaggg gagcacaccc       120
     cgacagaaaa gccccactgt ggaacagtaa caaacatgtc ggacaagcag aatwgcaatt       180
     cattacccca ggagggttcc ggtctctacg aggccgggga atccctccgt gctacggcac       240
     gcaagccccg cgaatctggg gggggccagc cttgccgata tgttgctggg gaagggcccg       300
     agatgggcgg agtagaggga gtgcctggga agggcggaga agtgggagtg cctgtgacag       360
     gcggagtaga gatgcctgtg gaaggtggag agttgcagga gactgtggag gtgttgggag       420
     aggtgcctca taacagcgga ggtgtcctga aggaagcgag ggtcgtagtt gagaggttgg       480
     acctgagcga aggagtgtcg attgcgtccg acggtgcgag atcgagacgt gagtccatct       540
     cgtctgcggg aaggttctgg ggggtgcctg ggtcgaaggg ctcggatacg gagagcctca       600
     cctcggtcgg ktcgcggtca aagaccgtaa gggcgtcttt cctgaaagac ggaaggaagc       660
     ggcccagacg caggagcgac gaatccggtt cttctggaga gggagtgtcg gacagaccag       720
     cgccgaaaat cgcggctggc aggagaggga aaggamggcc cacgacaacg ggactatgtg       780
     aagtgcaggc tgaggccagg aaggcaaaat tggaggaacg tmggcttagg gcagaggaag       840
     aggtggcgca aagaacccta gctgtgcaaa gcaacacaaa cttggctttg tccagtatgt       900
     cgctgctctc ggatatggac ttggaggagw cgaggctwac ctcagacctg aaaggtcagg       960
     tagcggagag tctggcgatc atmcagaagg ttgccascaa atcaggaaat ttgaagggca      1020
     cgttcacgaa ggccctgaag gaggcagcta aatctatagc tgtggctgtg gacacgctcg      1080
     ctcagcgaac ggttaccgag gaggttgcca cactacgagc acacaacacc aagctgcaac      1140
     aggagatgct ggacatgcaa agacaggtca gtcttttacg ggctgacctt gatcgcagcc      1200
     gcccacaaga gagaagtgca gagcagcagg tccacaagag acctgacaag ccgtctcgta      1260
     atgagaagtc agggsacccc gacgagctgg caaggascat watgatccaa gtcgggacca      1320
     tggtcagtgc tcgcttggaa ggcctggaag ataggctact gccagctaag cgcttgcgcc      1380
     cgccgcttgc gtcagaccga acgccagcga atgtagcctc aacttcggca acaagcgcta      1440
     ctgaggccag agtgaccaca ctcatgcccc ccgccaaccc agcccccacg aaaggacaaa      1500
     agcctgcgaa aggcaagggc aagggtaagg ggaagagcaa taaggcacaa gcggcgaaag      1560
     ctcccgagcc gcggcctcta ccacctgctc cggcaaacac gaacgagggg tggaacgtcg      1620
     tcgccaggaa gggcaagaag aagaaggggg wggctgccca gcagcmgccg aaggggagga      1680
     aggcgcgacc aamatctgcg ccaaaagcac ccagactacg wcctcckagg tcgtctgtgg      1740
     ttgcgctaaa gctgcaaccg ggtgcaaata aggaagtgac atacaaagac gtcctgaccc      1800
     agatcaagga gaaggtggta ctggaggatc tgggcatcac ggacgtcagg ttcagagttg      1860
     cctcaacggg agcgaggcta ctcgaactgc cgggtgtcaa taccggggag aaggcggacg      1920
     ttctcgcgca acatctgcgg aacgtcctta atgctggcga tgtgcaggtc tcgaggccca      1980
     ccaggtgtgc tgagctgaga gtatgtgggc tcgatgactc tgtgacatcg gaggaggtgg      2040
     cggcggctgt gagtcgagca ggtggctgcg acgctagcgc cgttaaggtg ggggagatcc      2100
     gccaagaccg aaatgggctc ggtactgcct ggmtccgctg tccggtggca gcggcgaaga      2160
     aggtsagcgg cggaaggctg ttggtcggct ttgtgtcggc acgcgtgcag ttactgcagc      2220
     ctcgcgtgct gcgctgcttc cgctgccacg aagtagggca tgtcgcggct aattgcacga      2280
     gtgacaaaga ccggagtgca cactgctaca ggtgcgggaa gccagggcac aagcaaagtg      2340
     gttgctctgc ttcggcgcat tgccctattt gcgaggacgc aaaaaggccc gcggatcacc      2400
     tggcaggcgg agcagcgtgc gccaagatgt gcgctcaatc gaagaagcgg agaggtgcgg      2460
     cgaggcgaac aagccgaagc cgacctgaag ccccgacgca gggcgaggag ctgcagcaca      2520
     tggagcatca ataatggcgc tccacgtgct ccaggcgaac atcaaccact gtgccagagc      2580
     ccaagactta ttggtccaaa gcctggtgca gtggtcgatt caggtggcgg tcgttgcgga      2640
     gccctatagc attcctgcgc gtgacaactg ggtcgcagac aacaccggag tggtagctct      2700
     ggtcacccag atcgctgcgg gctctccgcc cttttcacga gtagagaagg gtgcgggatg      2760
     cgtcgcggca catgtcggcg acctagttgt cataggcgtc tacttttccc ccaatcgaac      2820
     tcttgcagag ttcgaggaat acctaatccg cttgggggaa atggtggaaa gacaccgtgc      2880
     ggcggaggtc ttggtcgcag gagacctgaa tgctaaatcc agcgtgtggg gctccgcaag      2940
     gacggacgta cgtggtgcga cactggagga gtggattgtt gccaccggct tgtcagttct      3000
     caaccgaggg actacaaaca cgtgtgtgcg aaggcagggc gggtccgtcg tagacataac      3060
     gtttgcgagc cctgtcctag cgcgccgtgt tcagggctgg cgagtgctga atgatgtgga      3120
     gactctctcg gaccatctct acatccaata tgagatctcc acacattcag cggcgcagtc      3180
     agcccccagt ccaacttcgg gagagttcgg accgcggtgg cgacttgggt gtctcgacag      3240
     agaactcctg gaggaggctg cgatagtgca ggcctggctg ccccagagct tggcgtctgt      3300
     ggaagacgct gccacctggg cgcagagggc tatgacgcgt atctgcgacg cgtctatgcc      3360
     ccgttccagg caccgccctc agcggcgaca agtgtactgg tggtcgggag agatcgctca      3420
     attgcgtgtc acctgcattg aggcgagacg ccagtacacg cactatcgca ggcgggtacg      3480
     ccgagaggaa gaggaggagg aacggcggta ccgcacgtac gtcgaggcga ggaaagcgct      3540
     acaggaagaa atcggtcgtt cgaaagcaga atctaacgac cgattgatcg cggggataga      3600
     cggggatccg ttcggaacgc cgtaccgcat ggtgtgcggc aaactccgga cgtgggctcc      3660
     gcccttgacg cagtcgctcc aaccggacgt tctccgagga gtgctgacgt cactgttccc      3720
     gcagcgggcc agttttacac caccaaccat ggcccgccct gtagcgcagg aggaggaagt      3780
     cgatagtgtc gcaccaccgg tggatgagaa ggagctcgaa gaagctttac gccgatctcg      3840
     gctcaagagc accgccccgg gcttggatgg cgttcccggc cgggcgctaa ctctggccct      3900
     taacatcctt gggcccagag tgcgagggct attctctgcc tgtctggctc aagccataat      3960
     tccacagcgg tggaagacag gcaggctagt cctcatcaag aaggagggtc gcccggcgga      4020
     ttcagccacc gcctacaggc ccatcgtgct cttgagcgag atcgccaagc tcttcgagcg      4080
     tgttgtagcc aggaggctac aacaccactt ggaggggaca ggtccggacc tctcggacca      4140
     ccagtatggc ttccgcaggg ggcgttcgac ggtggatgcc atactagagg tgaagtccca      4200
     tgcgcaggat gcggtggccc tgggcgatgg agtcttggcg gtgtctttag acatcgccaa      4260
     cgccttcaac tccctgccct ggccctgcat taaggaggca cttttatacc atcgtgtgcc      4320
     tccatacctg cgccgcgtca tcggggctta cctgtccggg aggtctgtga cctttccggc      4380
     tcctggagga ggttgggagg agtatgaggt gtcggccggt gttccacaag gatcggtgct      4440
     gggtccgatc ctctggaaca tcggatacga ctgggtgctg cgaggcggta ccctgagggg      4500
     gataaaggtc ctctgctacg ccgacgacac gctggtcttg gcacagcaga ggacctatcg      4560
     ggaggcggcg gtcctcgcga ccgctggagt agcggagatt gtcggccgca taaagcggct      4620
     tggtctggaa gtcgccttga acaagtccga ggcgttatac ttccatgctc ctcgaaaggg      4680
     cccaccacct gatgcccaca tcgtcgtcgg tggcgtcaac atagacgtca aaaggagcat      4740
     gaagtacctc ggacttgttc tggacggtcg gtggagtttc cggggccact ttacatcctt      4800
     ggccccgaaa ctgatgaaga cagcggcggc attggcgcgc cttttgccca atgtcgatgg      4860
     gccgagcgcc tctagccgtc ggctgtacac cggagtggtc aggtcgatgg ccctctacgg      4920
     tgctcccgtc tgggcggacg ccctggatcg gcacaacatc accctgctgc gacgtgcgca      4980
     gagggtgatg gccatccggg cgatacgggg gtaccggacc atctccggtg aggtggcgtg      5040
     cgtgctggct ggagtcatgc cgtgggatct ggatgctctg tctctggcgt cggtctattg      5100
     ccggcgtcga ggcctagcgt ccggggaacc ggcaagccca gcacgcgccg aggaggagcg      5160
     ggaagccgca ttagaagtgt gggaatcccg gctggcgaca ccatctgccg gccggttgac      5220
     gatcgaggcg gttcgtccag tgttccgcca gtggttagcg cggcgtcacg gcgtcctaac      5280
     cttccgcacc acacaggtgc tcacggggca tggctgcttc gggggttacc tgtgtcggat      5340
     cgccgggagg gagcccgacg ctcgctgcca ccactgcgac gactgcctcg acgagacggc      5400
     ccagcacacg ttggaggtgt gcwcagcctg ggcgtctcaa cgtcgcgctt tgcgcgacgt      5460
     catcggggac gacctttccc tgccggccgt kgtcaaggcc atggccggca gcgagacgtc      5520
     gtgggacgcg ktctcatcct tctgcgaggc agtggtgctc gagaaggagt cggcggaacg      5580
     ggcgagggag gcttttgccg aagtcgccat ccgccgtaag agaccgggtc gccggagggc      5640
     ggcacacgac cgccgccttc cgccctaatg wgccasaggg cggtcagctt ggggaagctg      5700
     gccgcctacc aacctggccc gagtaggcgc gcgcaggttg ctcccgcgcg ctwctccgag      5760
     caggccgtcg agggtgccca cacacccttg actccgcgac gtgccwwgca ggctcccgcc      5820
     gccgcgtttc gcggacgact mwmgtccccg cgtctcgcgg ccagtggcgg tcgaggagga      5880
     gcaccgtgag gttttagtgg gtattgggat tggccctcag ccggtccacg agtcccacat      5940
     aacccgctcg agtccccact cgggccggta tccgtaagag gatttcctca cgataaaaaa      6000
     aaaamaaaaa                                                             6010
//
ID   SART-1_APi  repbase;    DNA;    INV; 5591 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.03, Created)
DT   11-JAN-2013 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-1_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5591
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 760-760 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   Single copy
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TTAGG)n in the opposite
CC   direction to TRAS1, between TT and AGG.
CC   gb|ABLF02041886.1| 8330-2740.
XX
FH   Key           Location/Qualifiers
FT   CDS           1056..2372
FT                 /product="SART-1_APi_1p"
FT                 /translation="MPNSDMESPPSQPATVTLEHLEGKDSGLFRMLKAEAE
FT                 SLKEMAKRTQVKGLKESVDQVINIIGSIESNNAEMRVMRSQAVGSKVMVVD
FT                 AKKVVTILTQNLSAVVNESNKTVLDAISRVGTRTSGGNEAGEYDRPGGTDS
FT                 AEVKAAVANLQTLLEAQSAKMDEMAERGKQTAWTDVVRSKGKKDKGDKTGV
FT                 QLTERVPSRRRGARPPAILVDVSNEDFPELAKKIRSGACRDVIGNRVVGMR
FT                 QAKSGGLLIEVRGNPEEVSAVRAEIARSAGAEIGVRTLQQRELVEIRDLDQ
FT                 WSDGPEVLEAITSATGCDPSTIRLVSMRKRFGGAQLALVSAPKEVTQVIVS
FT                 QGRLRVGMVSCSVRHCDAKVRCFKCLAYGHEAKSCQGPDRTECCRRCGETG
FT                 HKAANCSATDQAASVFAKVLQASKSMPSAGSYRSSGATEDKCTPK"
FT   CDS           2372..5368
FT                 /product="SART-1_APi_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MISVLQINVGVCRVAQDLALATASNMNIDVIIMSEPY
FT                 RCGIEADGWFSDAGGKAAIFLSNPRLQVRAAGPKDNVGFRWVKVEDVTVYT
FT                 CYWSPNTVFTLFVDFLDRLEGSIRQQAGTVIIAGDFNAKAPVWGDHNEEPK
FT                 GRALVDMTASLGFTTCNIGDKPTFTRVYAGGISRSHIDITFVNDSSSYQVQ
FT                 DWRVLDLYSASLHKYIAFNITGAAGPERRPPEERWSWRRYDDSKLRDFMNL
FT                 ASIDITCDEAIPATEMLDLYLKQACDSCMPKGRYTGGKKPAFWWSQEIEKL
FT                 REECNRTRRRVKRGRLQPDQDQRREEFGRARKELKVAIRVSKRNSWNDLLK
FT                 QVEVDPWGLPYKLVTKKLVGRRPIPGLSTPGRVESIVDALFPREATIAWPP
FT                 RMETHDFPAVTRTEIVELSSRIPRGKAPGPDGVPDLIVRNVARHKPEILRD
FT                 IFNKCLKESVFPHRWKIAKLVLLRKGDKPLEEPSSYRPICLLNTVGKFFER
FT                 LIKTRIEKQLEEAGDLDDRQYGFRKGRSTVDAIRRVLDVVEAAGSGQLYNR
FT                 KLCAVVALDVANAFNSARWPRIVKAMRDKGMPPYLVGIIESYLSDRTVVHG
FT                 ESSTPTTCGVPQGSVLGPLLWNIMYDELLQVDTGGNERGMSSTELVAFADD
FT                 VAVVATGHTTWILETVINQALDKVAEWMMGAGLSLSVRKTEAVMLTTKRGY
FT                 SQPSLSILGSRIELKESIRYLGVVLHRVLGFRAHVESAAASAQVTATALSR
FT                 LMPNIGGPRQKKRSLLATVVASKLLYAAPIWGAAMAFNRNVTTLERPQRAI
FT                 AIRTIMAYRTVSTAAVLVIAGMIPAHLLAWERCERYKRRHEPDAARATSEI
FT                 RSETLRKWQTEWANESNGGWTRRLIQDINLWRGRKHGLLDFHITQLLSNHG
FT                 CFGEYLHRIGKLDTAACVDCQEQVDDAEHVFFVCGRWWKQRRALEVEVEED
FT                 VSPDNIVSIMVEKRSNWEAVVRFVNLVQSTREHEERVRQRLRVE"
XX
SQ   Sequence 5591 BP; 1480 A; 1341 C; 1681 G; 1089 T; 0 other;
     gagttcagcg gtggctgtcg tggcatgcag acgtgtccgt gcgtcgctcc cgagagtttt        60
     tgttttttct ccagtaatac ctcaccgttt tttgcgcgca acgttcgaat cgacgcatta       120
     gtccgctctg cgtcgattcc cacaaaccgc gtggaaatcg gttgagtttt cgctgagaaa       180
     tctcaattat cgtgtcacac acgtgtactg agctactgtg ctacgcacta ttcgtttttt       240
     tgataaaaag tgcgcgttcg ggccggtgtc gcttttgagt cggcccgatt aagacccacc       300
     ggaccctccc gaagggctcg gtgcatcgcg cgtccacccc ggacccctcg gtgccgagta       360
     agcacacagg acaagcccct gtgccgccgt gaagattgtg gccgaaacac acgcggaaag       420
     ttcacgcgcg gtggcccaga agacgcgtct ggtgaagacg aagccgtggc cacctcgacc       480
     gaagttttcc gacaaacaac gggtgagtaa actgagtttt tctttacccc ctatctcttt       540
     acacggccgc ccaaagccgc cgtgtggaaa acgggaattc cggcgaaaca gctgattctc       600
     gcgtcggggg aagaactgcc ccgtgataag gcgacgggga ccagccgacg gcgcgtggcc       660
     tagtgtcggc ggccaattga cggccttatc tgtcctttgg cggcaaattt aaatttgcct       720
     ccaaaacagt tttttggcaa taactcgtta ggaattcact ttagagcttc gggagtaaaa       780
     ttttgccccc ccgaaacccc ctgacctcct acgaccacac cggataccat cccgcaatcc       840
     ggaaccccct acacccccca ggagcggagt taggggaaag gatagggaca gtgaaccggg       900
     atagggacag tgaggcaaac ggcaatcata gctagtgtag gttccgatac cttcggattt       960
     ggtccctgca ctgcttcacc gcccgctgct gagtggagaa gtggtagaag caaagggggc      1020
     aagggtcgcc ggacctctcc cttgccacgg acaccatgcc gaactctgac atggaatccc      1080
     cgccctcaca gccagccaca gtgacacttg aacacctcga gggaaaagac tcggggctct      1140
     tccgaatgct caaggctgag gcagagtctt tgaaggagat ggctaagcgc acgcaggtaa      1200
     aggggctcaa ggagagcgtt gaccaggtga tcaacatcat agggtccatc gagagtaaca      1260
     acgccgagat gagagtgatg aggagccagg cagttggcag taaggttatg gtagtggacg      1320
     ccaagaaagt ggtgactatt ctgacccaga acttaagtgc ggtggttaat gagtctaata      1380
     agacagtact agacgccatc tcaagagttg gcacaaggac gtccggagga aacgaggctg      1440
     gagaatacga cagacctggc ggcaccgaca gcgcggaagt caaggcggca gtcgctaatc      1500
     tgcagacgct gctcgaagcg cagagcgcaa agatggatga gatggcagag cggggaaagc      1560
     agacagcctg gacggacgtg gttaggagca agggcaagaa ggacaagggc gacaaaacag      1620
     gcgtccaatt aaccgagcgg gtgccgagcc gtcgacgggg agcacgcccc ccggccatcc      1680
     tagtggacgt cagcaatgag gacttccccg agctcgcgaa gaaaatccgc agtggggcat      1740
     gccgagacgt cattggtaac cgcgtagtgg ggatgaggca ggcaaagtcc ggcggcctcc      1800
     tcattgaggt gcgtggcaac ccggaagaag tgtccgcagt gagagcagag attgcgagat      1860
     ctgcaggggc cgaaatcggc gtcaggacac tgcagcagag ggagctggta gaaatcaggg      1920
     acctggacca atggtcagat ggacctgagg tcctcgaagc cataacttcg gccacaggat      1980
     gcgacccgag cacgataagg ctagtgagta tgcggaagcg cttcggtgga gcccaactcg      2040
     ccttagtctc cgcccccaag gaggttacgc aggtgatcgt tagtcaaggt cggctgaggg      2100
     tgggtatggt gagctgtagt gtcaggcact gcgacgccaa agttaggtgt tttaagtgtc      2160
     tggcatacgg ccatgaggcc aagtcatgcc aaggtccaga taggaccgag tgctgcaggc      2220
     gctgcggcga aactggccac aaagcggcca actgtagtgc cactgatcaa gcggcaagcg      2280
     tttttgccaa ggtgttgcag gcgtccaaat ccatgcctag cgcaggatca tatcgctcga      2340
     gtggagcgac ggaggacaaa tgcacaccaa aatgatcagt gtcctacaga taaatgtagg      2400
     agtgtgcaga gtggcgcagg acctggccct ggccactgca tcgaacatga acatcgacgt      2460
     gattatcatg agtgaaccgt atcgctgtgg gattgaggca gacggatggt tcagtgacgc      2520
     cggtggaaag gcggccatct ttctatcaaa tccaaggctg caagtacgag ccgccggccc      2580
     aaaagacaac gtgggattta gatgggtcaa agtggaggac gtcacagtgt acacttgcta      2640
     ttggtctcca aacaccgtct tcaccctatt cgtggacttc cttgacaggc tagagggaag      2700
     cataagacaa caggcaggga cggtcataat cgccggtgat ttcaacgcga aggcaccggt      2760
     atggggcgac cacaatgaag aacctaaggg gcgtgcacta gtcgacatga ccgccagtct      2820
     gggcttcact acgtgcaaca tcggcgacaa accgacattt actagagtgt atgcaggcgg      2880
     gatatcgaga tcgcatatcg acatcacgtt tgtcaacgac agcagcagct accaagtgca      2940
     ggactggagg gtactggatc tttacagcgc atccctccac aagtatattg cgtttaacat      3000
     cactggagct gccggcccag agcgccgtcc accggaggaa aggtggtcat ggaggagata      3060
     cgacgactcc aagctaaggg actttatgaa tttggccagt attgatatca cctgtgacga      3120
     agcgatacca gccacggaaa tgctcgacct gtatcttaaa caagcgtgcg acagttgtat      3180
     gcctaagggc aggtacacag gaggcaaaaa accggctttt tggtggtcgc aggagataga      3240
     aaaacttcgt gaggaatgca acagaacgag acgccgtgtc aagaggggac gcctgcagcc      3300
     ggatcaggat caaaggcggg aggagtttgg acgtgctagg aaagaactga aagtggccat      3360
     cagagtcagc aaacggaaca gctggaacga cctactgaaa caggtagaag tggatccatg      3420
     gggcctacca tacaaattgg tgaccaaaaa actagttggt aggagaccca ttcccggact      3480
     ttccacgcca ggaagagtgg aatcgatcgt cgacgctcta ttcccgaggg aggcaaccat      3540
     cgcctggcca ccacgcatgg aaacccatga cttcccagcg gtcaccagaa cggaaattgt      3600
     ggagctcagc agcaggatcc cccgaggaaa ggcaccggga cctgatggtg tacccgacct      3660
     gattgtaaga aacgtcgcta ggcacaagcc agagatacta cgggacatct ttaataaatg      3720
     tctaaaggag agcgtcttcc cacatcgttg gaagatagcg aagctcgtgc ttctaaggaa      3780
     aggggacaaa cctctcgagg aaccctcctc ttatagacca atttgcttgc taaacacggt      3840
     aggcaaattt ttcgaaagac taataaagac ccgcatcgaa aaacagctcg aggaagccgg      3900
     tgacctcgat gaccgtcaat acggttttag aaaggggcgg tcgacggtgg acgccataag      3960
     acgcgtgttg gatgttgtag aagcagccgg ctctggacag ctttacaaca gaaagctgtg      4020
     cgcagtcgtg gcgttggacg tggcgaatgc cttcaattcg gcaagatggc cgaggatagt      4080
     aaaggccatg agggataaag gcatgcctcc ctacctcgtt ggtataatcg agagctacct      4140
     tagtgaccgg actgtggtcc acggagagag ctcaacaccc accacgtgcg gtgtcccaca      4200
     aggttcagtg cttgggcctc tcctgtggaa tataatgtat gacgaactcc tgcaagtgga      4260
     cacaggaggc aatgaacgag gtatgtcgtc cacggaactg gtggccttcg ccgatgacgt      4320
     ggctgtggtg gcaacaggcc atactacgtg gatactagag acggttatca atcaggcatt      4380
     ggataaagtt gccgagtgga tgatgggtgc tggactatct ctgtcggtta ggaagacaga      4440
     ggcagtcatg ttgacgacga agaggggata cagtcagccg agcctctcaa tcttaggcag      4500
     ccgcatcgaa ctgaaagaga gcataaggta tttaggagtc gtgctgcaca gggtactcgg      4560
     gtttagggcg cacgtggaat cggcagcggc cagtgcacaa gtcacggcga ctgcgttatc      4620
     aaggcttatg cctaacattg gaggcccgag gcagaaaaag aggtccctcc tggctacggt      4680
     tgtggcaagc aagcttctgt atgcagcgcc gatatggggt gcagcgatgg cgtttaatcg      4740
     caatgtaacg acgttggaaa gacctcagag ggccatcgcg atacggacca taatggcgta      4800
     caggacggtg tcaacggcag cggtgttggt gatcgcaggg atgataccgg cccacctctt      4860
     agcctgggag aggtgtgaga gatataagcg gagacacgag ccagacgcag caagggcaac      4920
     gtcagagatc cgttcagaga cattgaggaa atggcagaca gagtgggcaa acgagagcaa      4980
     tggaggatgg acaaggaggt tgatccaaga catcaacttg tggaggggca ggaaacatgg      5040
     gttattggat ttccacatca cgcaactgct gtccaatcat ggatgctttg gtgaatacct      5100
     ccacaggatc gggaagctgg acacggcagc atgtgtggat tgtcaagaac aagttgatga      5160
     tgcggaacat gtcttcttcg tctgcggcag atggtggaaa caacgcaggg cgctggaggt      5220
     ggaggtggaa gaggacgtgt cccccgataa catcgtgagt atcatggtgg agaaacggag      5280
     caattgggaa gcagttgtca gattcgtcaa cctcgtccag tccacaaggg agcacgagga      5340
     aagggtgcga cagcgactta gggtagaatg agtgtaatta ttttttgtac gccgaaggcg      5400
     gaagttagag gagtagagtc ctctcttttt ttgttgagca aagctcgtaa ttgttgttgc      5460
     gtttattgta atttatttgt aatttcacaa taaatgatac ggatacgggg agaaggacgg      5520
     ccctcacggg tgaagtacct cctcgtagcg ccgtggttca aacacaaaaa aaaaaaaaaa      5580
     aaaaaaaaaa a                                                           5591
//
ID   SART-1_CF   repbase;    DNA;    INV; 6969 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.03, Created)
DT   11-JAN-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   SART-type non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-1_CF.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-6969
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 761-761 (2014).
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   Single copy. It is followed by G(TTAGG)n.
CC   AEAB01005894 1-6969.
XX
FH   Key           Location/Qualifiers
FT   CDS           455..3388
FT                 /product="SART-1_CF_1p"
FT                 /translation="MENSNTPNPNSKFNFNSPTFNFKLNTGEETGSLEEPT
FT                 VVDSAEQLQSVDICSVFPQPVEEGVPTSVLRKESAIKIKDVRVWVNKPIRV
FT                 VKRKDLTSETRQEMDLSSRSAHEGLPTPDEPSLDKKIQRKRPYMSKDPETK
FT                 EGKTDSSEEVELKSRRMAIATLMSDSDVESDKDSALKTEKVTESSGRTRKS
FT                 PPPKGKKKRGRGRPPTTGEYIGWAKAKQAQLEAENRELELQAERELMEEEA
FT                 YRRDTRRNWAATLIKEAEGKVFEEDSPEHPRRRLLLKEAEDCAQTVLDVAK
FT                 KSGNLKGTFVKLLCSAAENFKTASRELGTLCAPTEMKALEKENASLKERLA
FT                 KMEKEVGELRGWVSDLKAGASASIPPRDSPILTTPDKTSAPSTNAEGDRRR
FT                 KALDILKRGREKKRMGRFEPDADNPPTLPPSPAVEKNREEMEVEESRYPGG
FT                 DPIMMEHSTCSSMKEQDASLGMESLVERLFGKIALRLGNMMNARFAAIEDR
FT                 LLPAKQIRPPLSFDLKKSDDRKAKEASNLMEKKTTTSKGAPQAGTKGKKGE
FT                 KEKNNSPAPNKRETIPPNRADIQVYESPVVPSTSSVPKASYAEVARKGKGD
FT                 QGGGLVKRAGKNPKKDGSPKVARASSTPIEGGGLSPSNKGPSKKGKKKKRS
FT                 AAVTLTLPAQPPSEDGNGTSLAQVMEEATQKINIKDLGIEYLRPKRAKTGG
FT                 LILEVPGENSAARADLLAAKLAEALGDKEGLRIARPITMAELRITGLDDAA
FT                 STAKVEAAIAEAGGCSLREIKVGDLRKAPSGLLSAWARCPKTAAERIAKTG
FT                 KIMVGWSAVKVEMLGARPLQCHRCLEFGHVRAKCPAEEDRSSRCYRCGQPG
FT                 HKAAGCVAAPKCQLCEAKGRVAGHRLGGAACPFSPAFKGKNREVASKKKPG
FT                 NTSEKIEGAGKSAQTWPSKGKVAKVERPKKPSRPKTTKKEVANNVEGALPP
FT                 SKGNVVGDSSTTGRGQEEAMDMS"
FT   CDS           3392..6586
FT                 /product="SART-1_CF_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDVHCLLQTNVNHSAPAQDLLRQHVAEWSIDLAVIAE
FT                 PYMVLDRADWAGDRDGSVAIICGGQQPLPFSILKRGEGFVAVNWGEMIVVG
FT                 VYFSPNRPHHEFEGWLDTLSETIRPDMNRPVLVAGDLNAKSDAWGSPVSNA
FT                 RGETLVEWAEVLGLIVLNQGQEFTCVRSNGASLIDITLGSPVAARMVSEWR
FT                 VMVGVETLADHRYIQFCVSNPIIGRRDRGEAEGMGGGRRPPRWSTKKLDRD
FT                 YLMAAAIAKAWTGELLGPWDDADTGAEKLREAITEICDAAMPRSKPVPGRR
FT                 AVYWWNQDLAGLRDECNRARRRYTRCRRRREPEERAAQLREEYCSRKTSLQ
FT                 RAIRKAKATAWEELVELVDQDPWGRPYRLVRKKLTSGGPPTTERLQPQLLT
FT                 RVVDTLFPDEEPIELPYRPPVMAPTPWTDDMRVTTQELGEVLVRLRNKKTA
FT                 PGPDGIPAKALALASSVVEESVRSLFNHCLMTGHFPKIWKIARLVLIPKEG
FT                 KPEGSPSAYRPICLLDEAGKLFERIIAARLRRHLIQEGPDLAECQYGFCEG
FT                 RSTIDAIMHVRSLAEEAVSQGREVVAVSIDIANAFNSLPWECIRGALDYHR
FT                 VPTYLREVIGDYLSHRFITYTGRYGEIQSRETRRGVPQGSVLGPLLWNLGY
FT                 NWVLRGALSPGLSLVCYADDTLVVARGQEWEDTVRLAEMGTSLVVSRVRAL
FT                 GLRVAPEKTEAIWFSRPRSRGPPVAQMHIEEVAVGIRPQMKYLGLVLDSKW
FT                 SFTPHFKWMAPRIRAVTNSLSRLMPNLRGPRDSVRRLYLGVVRSVALYGAP
FT                 VWYDRICGSRVPTKILEATHRRLALRVMRGYRTIPYEAACAVSGSLPWVLS
FT                 AGMYAELYQFKTVLRGDPDDDEEGGPRLPPGRMRRVLHAQRTQLRQQKISE
FT                 WKGSLANVRAGLYAVGALRPVLEEWIGRRHGSLGYRLVQVLTGHGCFGEYL
FT                 HRIRREADARCHHCGHTSDSPQHTLEACPAWDEDRRSLKDAIGEEDISLPA
FT                 LVRAMLKGEAEWQAAASFCEHVMLQKEAAERQREEDTSAPPARRRRGGVAR
FT                 RAYARLDH"
XX
SQ   Sequence 6969 BP; 1767 A; 1736 C; 2240 G; 1226 T; 0 other;
     acgtattccg aggccggggt ctggcggcgg gagtttggta cccggtggct gtcgtgaccg        60
     tttccccttc cgaagcggca gtcaccggga aggcgcttgc cccccagatt cggccagtcc       120
     ggtgtggggg cgtgctggtc gccacggcgg gtaaggcggg ggaggggagc ggctgccccg       180
     tccccgggtg gcgccacccg ttgcggtgtc cgagaggtcg gaggctcgga acccctgaag       240
     acccttggag gcgtcaaaac ctccaagggc tagtaggggg ctggaggccc gtgccgggga       300
     tgtccacccc ccggccagag ccataggcca cctccccggg ggaacttggg gcccggccgt       360
     agggtgttgc cggtcatgtt tcgggacact ctgcggtcgg tgagggtata ccctgggtgg       420
     cggagccgca acgggatagt gggatgtatt tgcaatggaa aattctaaca caccaaaccc       480
     aaactcaaaa ttcaatttca actcacctac tttcaatttt aaattaaata ccggggagga       540
     gactggctcc ttagaagagc cgacggtggt ggatagtgca gagcagctac agagcgtgga       600
     catatgctct gtgttcccgc agcctgtgga agaaggagtg ccgacttctg tgctcaggaa       660
     ggagagcgcc atcaaaataa aagatgtgcg tgtctgggtt aataagccca taagggtggt       720
     caaacggaag gacctgacaa gtgaaacgag acaggagatg gacctgtcat cgcgatctgc       780
     acacgaagga ttaccaactc ctgatgagcc ctcactggac aagaagatcc agaggaaaag       840
     gccgtatatg tcaaaggacc ctgaaaccaa ggaagggaaa acggattcct cagaagaggt       900
     cgaattgaag agcaggagaa tggcgatagc cacactgatg tcagatagtg atgtggagtc       960
     ggacaaggac tctgcactta aaacggaaaa agtgacggaa agctctggaa ggactcgaaa      1020
     gtctcccccc ccgaagggga agaagaagcg cggcagagga agaccgccta ccaccggtga      1080
     atacatcgga tgggcgaagg ccaaacaggc acagttagag gcggaaaacc gggaactcga      1140
     gctacaggcg gagagggagt tgatggagga agaggcctac aggagagata ctcgccgcaa      1200
     ttgggcggcg acgttaatta aggaagcgga gggaaaagta ttcgaggaag atagtcccga      1260
     acatccccga agaaggcttc tcctgaaaga ggctgaagac tgtgcccaaa cggttctcga      1320
     tgtggcgaag aaatcgggaa accttaaggg aaccttcgta aagctcctct gcagcgcggc      1380
     agagaacttt aaaactgcca gcagggaact gggaactctc tgtgctccta cggagatgaa      1440
     ggctctggaa aaagaaaatg cgagcctaaa agaaagactc gcgaaaatgg agaaggaagt      1500
     aggagaatta cgggggtggg tgagcgactt gaaggctggg gcctctgcct ctataccccc      1560
     gagggactcc ccaattctca ccactccaga caagacctcc gccccctcga cgaatgccga      1620
     gggagacagg aggagaaaag ctctggacat cctcaaacga gggagagaga aaaagagaat      1680
     gggaaggttc gagccagacg cggataatcc tccaacactc cccccctctc cagcagtgga      1740
     gaagaataga gaggaaatgg aggtagagga aagtaggtat ccgggtggag atccaattat      1800
     gatggaacac tccacttgct cctcgatgaa ggaacaagac gcgagcctgg gaatggagag      1860
     cctagttgag agactatttg ggaaaatagc cctgcgacta ggcaacatga tgaacgcgag      1920
     atttgcagca attgaggacc gcctgctacc ggcaaaacaa atcaggcccc ccttgagctt      1980
     tgacttgaag aagtcggatg ataggaaggc caaggaagca agcaacctaa tggagaagaa      2040
     aacaacaact tcaaaggggg ctccacaggc ggggacaaag gggaaaaagg gagagaagga      2100
     aaagaacaac tcccctgctc caaacaagag ggagacaata ccgccaaaca gggcagacat      2160
     acaggtctat gaatcccctg tcgttccctc tacttcctct gtccctaagg cctcctatgc      2220
     agaggtagcc aggaagggaa aaggggatca aggtggaggt ctggtgaaga gagccggaaa      2280
     aaaccccaaa aaggatggct cccccaaggt tgcaagggcc tcatccaccc ccattgaagg      2340
     cggtgggctc agcccgagca acaagggtcc atccaaaaag gggaaaaaga agaagagatc      2400
     agcggcggtg actctaacac tgccagccca acctccttct gaggatggga atgggacgtc      2460
     cttggcccaa gtaatggagg aagctactca gaagataaac atcaaagatc tgggtataga      2520
     gtacctccgt cccaagaggg ccaaaacggg gggacttata ttagaggtcc ctggggaaaa      2580
     tagcgctgct agagcggacc ttctagccgc caaactggcg gaggccttag gcgataagga      2640
     gggattacgt atcgccaggc cgataaccat ggcggagctc cggattacgg ggctggacga      2700
     tgcagcctcc acggctaaag tggaagcggc tattgctgag gcgggcggat gttcactgag      2760
     agagattaaa gttggtgacc tgaggaaagc cccatcaggc ctcttgtccg cgtgggccag      2820
     gtgccccaaa acggcggcag aaaggatcgc caagacgggt aagatcatgg ttggctggtc      2880
     cgcagtcaag gtagagatgc tgggtgctcg cccactgcaa tgccataggt gcctagaatt      2940
     tgggcacgtg agggcgaagt gccctgcgga ggaggaccgg agctctaggt gctatcgttg      3000
     tgggcaaccg gggcacaagg cagcgggatg tgttgcagcc cccaagtgtc agctatgcga      3060
     ggccaaagga cgcgtagctg gacacagact cggaggggcg gcctgccctt tctcccctgc      3120
     atttaagggg aagaacagag aggtcgcgag taaaaagaag ccgggaaaca cctcggagaa      3180
     gatagaggga gccgggaaat cagctcagac ctggccatcg aaagggaagg tcgcaaaggt      3240
     ggagaggccc aagaagccca gcagaccgaa gaccacgaag aaggaagtag ccaacaacgt      3300
     ggaaggggcg ctccccccct ccaagggcaa cgtagtaggc gatagctcta caacgggaag      3360
     aggccaggag gaggccatgg acatgtcata aatggatgtc cattgcctcc tccagaccaa      3420
     tgtcaatcac tccgctcccg cgcaggatct gctccggcag catgttgcgg agtggagtat      3480
     tgacctagcg gtgattgccg agccctatat ggtgctggac agggccgact gggccggaga      3540
     tcgagatggc tcagtggcaa tcatatgcgg ggggcagcaa cccctcccct tctcaatact      3600
     gaagagaggg gagggttttg ttgcggtgaa ttggggagaa atgatagtag tcggagtgta      3660
     cttctccccc aaccggcccc accatgaatt cgaaggatgg ctggacaccc tttcggagac      3720
     catccgcccg gacatgaacc gtccggtgct ggttgctggg gacctcaatg cgaaatcgga      3780
     cgcttggggc tccccggttt ccaatgctag aggtgagact ctagtggagt gggcggaggt      3840
     actaggcctc atagtattga accaaggcca agagttcaca tgtgtgcggt ccaacggtgc      3900
     atccctgatc gacatcacct tagggagccc cgtggccgca cgcatggtaa gtgaatggag      3960
     agtaatggtg ggagtggaga cactagcaga ccaccgctac atccaattct gcgtctctaa      4020
     tcccataata gggagaagag atagaggaga ggcagagggg atgggtggtg gcaggaggcc      4080
     acctaggtgg tccacgaaga agctggatcg agattacctg atggcagcgg ctatagccaa      4140
     agcctggaca ggagaactgc tgggcccgtg ggatgacgcg gatacggggg cagaaaaact      4200
     ccgggaggcc atcacagaaa tatgtgatgc agcaatgccc cgaagtaaac ctgtccccgg      4260
     aaggcgggcg gtatattggt ggaaccagga tctggccggg ctcagagacg aatgtaacag      4320
     agctcggcgg cgatacacca ggtgccgccg taggagggag cctgaagaga gagcagccca      4380
     gctgagagag gaatactgct caagaaaaac ttccctccag cgggccattc gtaaggccaa      4440
     ggcaacggct tgggaagaac tggtggagct ggtcgaccaa gatccctggg gacgaccgta      4500
     caggctggtc agaaagaaac tgaccagcgg ggggcccccg acgactgaac ggctccagcc      4560
     ccaactcctg acgcgggtgg tcgacacctt gtttcctgac gaggagccaa tagaattgcc      4620
     atatcgacca ccagtgatgg ctccgacccc gtggacggat gatatgaggg tgactacgca      4680
     agagctcgga gaggtattgg taaggctccg aaataaaaag accgccccgg gcccggatgg      4740
     cattccggct aaggccttag ccttggcctc gtcagtggta gaggaaagtg ttcggtcttt      4800
     attcaatcat tgtttgatga ccggacattt ccccaaaatt tggaagatag cacgcttggt      4860
     gctcatcccc aaggagggca aaccggaggg atccccatcg gcgtaccgcc ccatatgcct      4920
     ccttgacgag gcgggcaaac tatttgaaag aattatagcg gcccgcctga ggaggcattt      4980
     gattcaggag ggccccgatc tggctgaatg tcaatatgga ttttgcgagg gacgttcaac      5040
     gatcgatgcg atcatgcacg ttagatctct cgcggaagag gcagtctccc aggggaggga      5100
     agtggtagca gtatcaattg acattgcgaa tgcctttaat tccctcccct gggagtgcat      5160
     aaggggggcc ctggattacc acagggtccc cacctatctc agggaagtga ttggggatta      5220
     cctgagccac aggttcatca cctacacggg gcggtacggc gagatacaga gccgagaaac      5280
     ccgaagaggg gttccacaag gatcggtgct tgggccgctc ttgtggaact tgggttacaa      5340
     ctgggtcctc aggggcgccc tctccccggg cctctcactg gtgtgctacg ctgatgacac      5400
     gctggtggtg gcccggggac aggagtggga agatacggtc cgcctggcag agatgggaac      5460
     gtcgctggtg gtatcgcgcg tccgcgctct gggcctcagg gtggcccccg aaaagaccga      5520
     ggctatttgg ttctccaggc ctcggtcaag aggtccaccg gtggcccaga tgcatataga      5580
     ggaggttgct gtcgggatca ggcctcagat gaaatatctg gggcttgttc tcgacagcaa      5640
     gtggagtttt acgccgcatt ttaagtggat ggcccctcgg attcgagcag ttaccaacag      5700
     tctttcgaga ctgatgccga atctgagggg tcctagagac agtgtgcgcc gcctctattt      5760
     aggagtggtg cggtctgtag ccttgtacgg agcccccgtg tggtatgacc gaatctgcgg      5820
     cagtcgagtg cccaccaaga tactggaagc cacacatagg cgactggcgt tgagggtcat      5880
     gcggggatac cgcaccattc cgtacgaggc ggcgtgcgcg gtgtccggga gcctgccttg      5940
     ggtcctctcc gcgggcatgt atgctgaatt atatcagttc aaaactgtcc tgcggggaga      6000
     cccagatgat gatgaagaag ggggtccccg gttaccaccg ggaaggatgc ggcgtgtgct      6060
     ccacgcccag aggacccagc tccgacagca gaagatttca gagtggaagg gcagtctggc      6120
     caatgttaga gcgggactat atgctgtcgg ggccttgcgc ccagtattag aggagtggat      6180
     agggcgcaga catgggtccc tgggttatag gctggtgcag gtgctcaccg gacatggatg      6240
     tttcggtgag tacctgcacc gcattcggag agaagcggac gcgcgatgcc accactgtgg      6300
     acatacgtcg gactcgcctc aacacacttt ggaggcgtgt ccggcgtggg atgaggacag      6360
     gcgatcctta aaggatgcaa ttggggagga ggatatttcc ctcccggctc tggtcagagc      6420
     catgttgaaa ggggaggcag aatggcaggc ggccgcctcc ttctgcgaac acgtcatgtt      6480
     gcagaaggag gcggccgaaa gacagcggga ggaggacaca agtgcccctc ctgcaaggag      6540
     aaggaggggc ggggtggcga gaagggcata tgcccgactc gaccactagc cgctctatgt      6600
     cccccttctc cggggtcgca ggggggtgtg agtgcgggtg acactcacac cccattgcac      6660
     cgcgacccca gggacgtagc agccatgcgt ggtggtcccg catcgctgct aaatgtttac      6720
     catccggcag ggagtcctcc ctcctccctc cacctgactt tgtaaaacgt cgggaagggg      6780
     aggacggagg actcgagcgg gggcaaactc tggtagaatg cttgcgatcc cagagtttgc      6840
     ccagataacc gcgctggaag gaccaccgtg gagttttagc cggtaagagt ccggcataac      6900
     ccgtccctct ccccgggggg gcgggtatcc atgaggattt ctccacgtta aaaaaaaaaa      6960
     aaaaaaaaa                                                              6969
//
ID   SART-1_HMM  repbase;    DNA;    INV; 6011 BP.
XX
AC   .
XX
DT   07-FEB-2013 (Rel. 19.03, Created)
DT   05-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-6011
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 762-762 (2014).
XX
DR   [2] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   ~97% identical to consensus. It is similar to the SART family of
CC   silkworm. Some copies follow (TTAGG)nTT and some are followed by
CC   AGG(TTAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           2056..5664
FT                 /product="SART-1_HMM_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MRPTSKXGRSDRTGTAXAQLGSLPCRGAKKVSGGRLL
FT                 VGFVSARVQLLQPRVLRCXRCHEVGHVAAKCSSXDDRSEQCFRCGQPGHKQ
FT                 XGCSAAAHCPVCEAAERPADHTAGSAACAKASATRKRGRRGGERGRKRRPV
FT                 RRPSRGRGGAAHGGSIMALRVLQANINHCARAQDLLVQSLAQWSIQVAVVS
FT                 EPYSVPDRDNWVADNTGVVTIITQVAAGSPPFSRVERGAGCVAALVGDLVV
FT                 VGVYFSPNRTLAEFEEFLIRLGEMVERFRPAEVLVAGDLNAKSSVWGSATT
FT                 DVRGVTLSEWVVATGLSVLNRGTKNTCVRRLGGSVVDVSFASPALARRVRG
FT                 WRVLDDVETLSDHLYILYEISTHSAVQPAPSPNSREYGPRWQLGRLDRQLL
FT                 EEAAIVESWLPQSLASAEDAASWAQGALTRICDASMPRSGRRPQRRQVYWW
FT                 SWEIAQLRNTCVAARRQYSHYRRRVQKVQEEEDRLYRVYVEARTQLQEEIG
FT                 RVKGESHDRLIAGIDQDPYGTPYRMVLGRLRAWAPPLTQTLQPDILRGVLS
FT                 SLFPQRASFAPPSMARPAAREEVEEDDEDSVTPPVEEEELEEAVRRSRLKS
FT                 TAPGLDGIPGRALTLALNTLGPRVRGLFTACLAQAIIPQRWKTGRLVLIKK
FT                 EGRPADSASAYRPIVLLSEIAKLFERVVARRLQHHLEGTGPDLSDHQYGFR
FT                 RGRSTVDAILEVKSYAQDAVARGDGVLAVSLDIANAFNSLPWPCIKEALLY
FT                 HRVPPYLRRVIGAYLSGRSVTFPAPGGGWEEFVVSAGVPQGSVLGPILWNI
FT                 GYDWVLRGGTLRGIKVLCYADDTLVLAQQRTYREAAVLATAGVAEVVGRIK
FT                 RLGLEVSLNKSEAIYFHAPRKGPPADAHIVVGGVKIDVARSMKYLGLVLDG
FT                 RWSFRGHFTSLAPKLLKTAAALARLLPNVDGPSASSRRLYTGVVRSMALYG
FT                 APVWADALDRHNITLLRRAQRVMAIRAIRGYRTISGEVACVLAGVMPWDLD
FT                 ALSLASVYCRRRGLASGEPASQARAEEEREAAVEVWESRLATPSAGRLTIE
FT                 AVRPVFRQWLARRHGVLTFRTTQVLTGHGCFGGYLCRIAGREPDARCHHCD
FT                 DCLDETAQHTLEVCSAWASQRRALRDVIGDDLSLPAVVKAMAGSETSWDAV
FT                 SSFCEAVVLEKESAERAREAFAEVAIRRKRPGRRRAAHDRRLPP"
FT   CDS           join(1304..1594,1563..2270)
FT                 /product="SART-1_HMM_1p"
FT                 /translation="MARTVMVXVGTMVSTRLEALEDRLPPAKAVAXTASGG
FT                 QKAGGWSAAGAAEPVVTTLMAPANPAPRKGPKGKKRKGXGKAPSQRRQLSL
FT                 GRCLLLRQTASAAASCSGRPERGVERRGEEGAKKKAAPKGKQAAQGGESKL
FT                 QKPKLRPPRSPVVALKLQPAAADKLTYKDVLTQVKEKVKLEDLGITDXRFR
FT                 VASTGARMLELPGANTGEKADALAQQLRGVLNXGEVQVSRPVKCAELRVSG
FT                 LDDSATSEEVAAAISRVGGCDAADVKVGEIRQDRDGLGTAGFAALSXREEG
FT                 ERREAPXGLRLGACAAAAASXPALLPLPRSWPRGGEVQQXR"
XX
SQ   Sequence 6011 BP; 1151 A; 1669 C; 2133 G; 1026 T; 32 other;
     accactcgca cttgcgggcg agtggaccgg gaatttattc ccggcgcgga ccaaaaccag        60
     ctaggcatgg gcgtgtcttt agtccattgt tatggacacg gcctagggga gcacaccccg       120
     acagaaaagc cccactgtgg aacagtaaaa acatgtcggt acagcagaat ttcaattctt       180
     accccaggag ggttccggtc tctacgaggc cggggaatcc ctccgtgcta cggcacgcaa       240
     gccccgcgaa tctggggggg gccagcctta ccgatatgtt gctggggagg ggcccgagat       300
     gggcggagtg agtgtgaggt ggagaaggac ggagttgtgc ctgggatggg cggagttggt       360
     gtggacgctg agaagggmgg agtagtggtg agtgtcgagg gtgcgggagt gccgagaggg       420
     gcggtgctgg ttgttgagcc gaggagagaa ctgtgggggg gcgaggccca ggagggstga       480
     tagtccsgca actgtgccgt aggaggtgtg ctgaagacgg cgmaagtcgt agtggaacga       540
     ctggacctgg aggagattgc ctcsattatc agtggaaggt ccaggtcgtc gacatcgtcg       600
     cggggccgkt tctgggcggc ctctgagtcg gacgcggaca gtgtcatgtc cgtcggctcg       660
     accagtgcca cgcaatgcgg aggagaggcg tgattccgga aggacaggaa gaggcgccgg       720
     agcagggagg gcaactctgg gtcttcggac gaggagagga gaaggagaag ccaaggccaa       780
     aataccgcgg ctaaaaggag cagggcccac catctgctcc tgacgagaag attgactggc       840
     tgtgccagga agtcgcccag aggccaagcg cgaggagcgt cggctgaggg cggaggagga       900
     ggtggcggat atcgccgcag caatacagag ccgcgcaagc tccaggctct cggatgtgtc       960
     cgattggatg tcgccccgac gagcctctag tctctgacct gcattgccag gtctctgaca      1020
     gcctggcagt tattaacaga gtcgccagca agtcggggaa cctgaagggc acctttacga      1080
     aggccctgaa ggaggctgcc ggcgcgatat ccaaggctgt ggacaccttg gccagcagga      1140
     cggcgwccga ggaggtccat ctcctcagag cctcgaacac scggctgcag gmggaattgg      1200
     cggacttgmg gaaagagttt gcccksctaa gagcggacst ggagcgctca ggaccgcggc      1260
     agagcagcca aaggagacgg cgaaggctcc atccgtcgat gacatggcgc gcactgtgat      1320
     ggtgsaagtg ggcactatgg tcagtacgcg gctggaggcc ctggaggaca ggctcccgcc      1380
     ggcaaaggcg gttgcgscca ccgctagcgg cggacaaaag gcaggaggct ggtcggcagc      1440
     aggcgcggct gagcccgtcg tgaccacsct aatggcgccc gccaaccctg ccccccgaaa      1500
     gggcccgaaa gggaagaaga ggaagggtgs gggaaaggca ccaagccagc ggcgccagct      1560
     gagcctcggc cgctgcctcc tgctccggca gacctgaacg aggggtggaa cgtcgtggcg      1620
     aggaaggggc gaagaagaag gcggctccta aagggaagca ggcggcgcaa ggaggcgagt      1680
     caaagctgca gaagccaaag ttgcgcccac ctaggtcgcc ggtggtggcg ctgaagctgc      1740
     agccggctgc cgccgacaaa ctgacctaca aagacgtgct gacccaggtc aaggagaagg      1800
     tgaagctgga ggacctgggc atcaccgact tsaggttcag ggtcgcctcc actggtgcca      1860
     ggatgctgga gctgcctggc gccaacactg gcgaaaaggc ggacgccctg gcgcagcagc      1920
     tgcgcggggt ccttaacsct ggcgaagtgc aggtstcgag gccagtaaag tgtgcagagc      1980
     tgagggtgag tggcctcgac gactctgcaa cttcggagga ggtggcggcg gccatcagcc      2040
     gagttggcgg ctgcgatgcg gccgacgtca aagtsgggga gatccgacag gaccgggacg      2100
     gcctmggcac agctgggttc gctgccctgt cgkggcgcga agaaggtgag cggagggagg      2160
     ctcctmgtgg gcttcgtctc ggcgcgtgtg cagctgctgc agcctcgmgt cctgcgctgc      2220
     twccgctgcc acgaagttgg ccacgtggcg gcgaagtgca gcagtgmaga tgaccggagc      2280
     gagcagtgct tcaggtgcgg ccaacccggg cacaaacaam gtgggtgctc ggcggcggcg      2340
     cactgcccgg tttgcgaggc ggcagagagg cccgcggacc atacggcagg aagcgccgcg      2400
     tgcgcgaagg ccagcgccac ccgaaaaagg gggaggaggg gaggcgaacg gggccggaag      2460
     cgccggccag tcaggcgmcc cagccggggg agaggaggtg cagcacatgg aggatcaata      2520
     atggccctcc gtgtgctgca ggcgaacata aaccactgtg ccmgggccca ggacttattg      2580
     gtccaaagcc tggcgcagtg gtctatccag gtggcggttg tttcggagcc ctacagcgtt      2640
     cccgacagag acaactgggt agccgacaac accggggtgg tgactattat cacccaggtc      2700
     gcagcgggct ctccgccctt ctcacgagta gagaggggtg cgggatgcgt cgctgcactt      2760
     gtcggcgacc tagttgtcgt aggggtctac ttttccccca atcgaactct tgcggagttt      2820
     gaagagttcc ttatacgatt gggggaaatg gtagagcgat ttcgtccggc ggaggtgttg      2880
     gtcgcgggcg atctcaacgc gaagtccagc gtgtggggct ccgcaacgac ggatgtgcgt      2940
     ggtgtgacgc tgtcggagtg ggttgttgcc accggtttgt ctgtgctcaa ccgagggacc      3000
     aagaacacgt gtgtgcgaag gctgggcgga tccgtcgtgg acgtttcgtt cgcgagcccg      3060
     gccctagcgc gtcgtgttcg gggctggcga gtgctggatg atgtggagac tctctcggat      3120
     cacctctaca tcttatacga gatctccaca cattcagcgg tgcaaccagc ccccagtcca      3180
     aactcgcgag agtacggacc gcggtggcaa ctgggtcgtc tcgacaggca gttgttggag      3240
     gaggccgcga tagtggagtc ctggctgccc cagagcttgg cgtctgcaga agacgccgca      3300
     tcctgggcgc agggggcgct gacgcgtatc tgtgacgcgt caatgccccg ttccgggcgc      3360
     cgccctcagc ggcggcaagt gtactggtgg tcgtgggaga tcgcgcaact gcgtaacacc      3420
     tgcgttgcgg cgagacgcca gtacagccac tatcgcagac gggtacagaa ggtgcaggag      3480
     gaggaagacc gactgtaccg cgtctatgtc gaggcgagaa cgcagctgca ggaggagatc      3540
     ggtcgtgtga aaggcgagtc gcacgaccgg ttgatcgcgg ggatagacca agacccgtac      3600
     ggcacacctt accgaatggt gctcggtagg ttacgggctt gggcaccacc actgacgcag      3660
     acactccaac cggacatwct ccgaggggtt ctgtcgtcgc tattcccgca gcgggccagt      3720
     tttgcaccac ccagtatggc ccgccctgca gcgcgtgagg aggtagagga ggacgacgag      3780
     gacagcgtca caccaccggt ggaggaggag gagctcgaag aagctgtacg ccgatctcgg      3840
     ctcaagagca ccgccccggg cttggatggc attcccggcc gggcgctaac tctggccctc      3900
     aacaccttag ggcccagagt gcgaggacta ttcactgcct gtctggctca agccataatt      3960
     ccacagcggt ggaagacagg caggttagtc ctcatcaaga aggagggtcg cccggcggat      4020
     tcagcctccg cctacaggcc catcgtgctc ttgagcgaga tcgccaagct cttcgagcgt      4080
     gttgtagcca ggaggctaca acaccatttg gaggggacag gtccggacct ctcggaccac      4140
     cagtatggct tccgcagggg gcgatcgacg gtggatgcca tactggaggt aaagtcctat      4200
     gcgcaggatg cggtggcccg aggcgatgga gtcttggcgg tgtctttaga catcgccaac      4260
     gccttcaact ccctgccatg gccctgcata aaggaggcac tgttatacca tcgtgtgcct      4320
     ccatacctgc gccgcgtcat cggggcttac ctgtccggga ggtctgtgac ctttccggct      4380
     cctggaggag gttgggagga gtttgtggtg tcggccggtg ttccacaagg atcggtgctg      4440
     ggtccgatcc tctggaacat cgggtacgac tgggtgctgc ggggcggcac cctgaggggg      4500
     ataaaggtcc tctgttacgc cgatgacacg ctggtcttgg cgcagcagag gacctatcgg      4560
     gaggcggcgg tcctcgcgac ggctggagtg gcggaggtcg tcggccgcat aaagcggctg      4620
     ggtttggagg tctccctcaa caagtccgag gcaatctact tccatgctcc tcgaaagggc      4680
     ccaccggcag atgcccacat cgtcgtcggt ggcgtcaaga ttgacgttgc ccggagcatg      4740
     aagtacctcg gacttgttct ggatggtcgg tggagttttc ggggccactt tacatctttg      4800
     gccccgaaac tgttgaagac agcggcggca ctggcgcgcc ttttgcccaa tgtggatggg      4860
     ccgagcgcct ctagccgtcg gctgtacacc ggagtggtcc gatcgatggc gctctatggt      4920
     gctcccgtat gggcggacgc cctggatcgg cacaacatca ccctgctgcg acgtgcgcag      4980
     agggtgatgg ccatccgggc gatacggggg taccggacca tctccggtga ggtggcgtgc      5040
     gtgctggctg gagtcatgcc gtgggatctg gatgctctgt ctctggcgtc ggtctattgc      5100
     cggcgtcggg gcctagcgtc cggggaaccg gcaagccaag cacgcgccga ggaggagcgg      5160
     gaagccgcag ttgaagtgtg ggaatcccgg ctggcgacac catctgccgg ccggttgacg      5220
     atcgaggcgg ttcgtccagt gttccgccag tggttagcgc ggcgtcacgg cgtcctaacc      5280
     ttccgcacca cacaggtgct cacggggcat ggctgcttcg ggggttacct gtgtcggatc      5340
     gccgggaggg agcccgacgc tcgctgccac cactgcgacg actgcctcga cgagacggcc      5400
     cagcacacgt tggaggtgtg ctcagcctgg gcgtctcaac gtcgcgcttt gcgcgacgtc      5460
     atmggggacg acctttccct gccggccgtg gtcaaggcca tggccggtag cgagacgtcg      5520
     tgggacgcgg tctcatcctt ctgcgaggca gtggtgctcg agaaggagtc ggcggaacgg      5580
     gcgagggagg cttttgccga agtcgccatc cgccgtaaga gaccgggtcg ccggagggcg      5640
     gcacacgacc gccgccttcc gccctaatgt gccagagggc ggtcagcttg gggaagctgg      5700
     ccgcctacca acctggcccg agtaggcgcg cgcaggttgc tcccgcgcgc tactccgagc      5760
     aggccgtcga gggtgcccac acacccttga ctccgcgacg tgcctagcag gctcccgccg      5820
     ccgcgtttcg tggacgattc tagtccccgc gtctcgcggc cagtggcggt cgaggaggag      5880
     caccgtgagg ttttagtggg tattgggatt ggccttcagc cgccaagtcc acgagtccca      5940
     cataacccgc tcgagtcccc actcgggccg gtatccgtaa aaggatttcc tcacgttaaa      6000
     aaaaaaaaaa a                                                           6011
//
ID   SART-1_LHu  repbase;    DNA;    INV; 6628 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.03, Created)
DT   11-JAN-2013 (Rel. 19.03, Last updated, Version 1)
XX
DE   SART-type non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-6628
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(2), 502-502 (2014).
XX
DR   [2] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   It is followed by G(TTAGG)n. 5' terminus is uncertain. This
CC   sequence is the longest copy available from the genome sequences,
CC   and many sequences more than 80% identical to this copy are
CC   followed by telomeric repeats.
CC   ADOQ01017411.
XX
FH   Key           Location/Qualifiers
FT   CDS           126..2744
FT                 /product="SART-1_LHu_1p"
FT                 /translation="MDMDNITEQNVSGSDSEKRHVGGLVPAPHGSSSCEGL
FT                 TSLSAASGGCRPAIASMERLGSSITILPLKKKHKAPSGCESKAGPSVVSES
FT                 IVIESDEEGGFDPASLCTVDHSDTEDMAASGGSSGFSRQKRKGINKDKIIA
FT                 TSTNRKRRKRGSPYKDEETEDDRFAVHFSVDNRKKVEDEMAGLPLEHATQL
FT                 NQKIKDMTDKIDSIRMRSPGIKGSFSGQIKVFLEVIRRTSDLMSMKASSME
FT                 DPEFWRAKYYDMEKSAKDNKRKLDLIEVELKELKRREQINDAYDLDSHNKD
FT                 LPSMSNNGNNNSKLDVVPSIIGSLRSASETKLIKDRIGISNKKYLLNSDSD
FT                 TREPDVSRVEIDLAIIRSLDRLGDGMSQLIRETRLLREDLNSGEGRTDEFH
FT                 YPGSSTDFTGKRKGKNKNINKSIPQSREGKSYAESLGSKVPSGSSAKSKNV
FT                 QSVKNKVSRSAVISSDAENKPVKKYSKTMFVSNINNGNNITKRVDIVSMSD
FT                 EDILENFVAVDDGEIEWSVPRNRKSIRKRKKVSLKSTPIKVSTQSDTNPEY
FT                 ETIYDKYTAGDIKRNANNEITTIDRHNNCINSDNINRKKPDNRSFKDKVEN
FT                 LKKKVPRTSAISIVIDGADITYAEIMRLAREKISLSDMNISDTKIKKSITG
FT                 GIIIEIPGEDSDLKAELLLNSLKKVFNNINRIKFKKPSKNSQVKLVGLDDS
FT                 ITTCEITKIIAEISKCSPDNVSCSPIRFIRGGLGVAYVRCPIAAAVSILEA
FT                 ARINIGWTTVRVVPVDPRPLQCFRCLAVGHTLQRCPEGKDRRACCYRCGGV
FT                 DHKSSACKNKVNCPVCTDRGLRADHLAGTTSCKPIPPGKILENKSDVNKDN
FT                 ASAGGSNNNNSLPVLINEGR"
FT   CDS           2812..5943
FT                 /product="SART-1_LHu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLNKVNTINILICNLNHSKTAQDNLCQLMHEYNAGAA
FT                 IISEPHSIPKEDDRWVQSADEPPLSAILWRRVPGLFLPIRPLERGYGFCVA
FT                 SWNKLVIFSCYSSRNIANYEFNGFLNELSLIVNKYKHCPTLVIGDFNARHS
FT                 DWDPKQSDLRGYHLRNWMEEANLFLLNKGYNYTCDRWQGKSVIDLAFANLQ
FT                 AKKIIKSCTVETKVVTLSDHRLLRLEIGSGRARETFKTINKKFVKWNYHKL
FT                 NLDLLTAGSLGLSWSLDLTSMNSARLLVEWLGDSLKSISDLSMPRSKGFYR
FT                 ESAYWWNEEVATSRRAVMRARRGLSRARKKGNPTLTNIEYRKYRVSLRTYR
FT                 LNIIRAKNGAWKELLNDINNNPWSLSYKVVMKKLKPVAHPVCETLSHPEVE
FT                 NIVSVLFPDDSREHISANSLPRFVWLDDYSVSLAELSRALKKLRGNGKAPG
FT                 PDGVLGGIIVGSAGSFMEVWRACFNACLKEGVFPAAWKIAKLVLIKKKDGM
FT                 STDPGIYRPICLLDESSKLYERIIASRLVDHLRSTGSLSDNQFGFREGRST
FT                 LDAILELRHLVHEETEAGNVVIAISFDIKNAFNTLPWGVIRSAMASMEFPS
FT                 YLRRVISDYLTDRSLVYIDSEGIVRRRGVYRGVPQGSVLGPILWNIGYNSV
FT                 FSMDLPLGCHILRYADDTILIVSEKNFEAASHLAMVASGMVVRKIEELGLK
FT                 ISPHKTEITAFPASAVGHGSHKLIIKNKEVIVAPTLKYLGVILDGDWNFTQ
FT                 HFEKLYIKVNKTLGYLRGIMPNCRGPNERVRRLYLNVVLSMLLYGAPVWSA
FT                 SLGENRRARTLMQGILRRIAQRVCCAYRTVSFVAASLISGTPPLEFQARRM
FT                 AIVYFKTRSATEVDEEISPGTRALWYLEAKEQALSDWRESLSKLNHTHPSF
FT                 RLREALVDRLKEWVNRRHGWVTYHMTQFLTNHGCFNEFLHKIRKADSAICY
FT                 HCLDAVDTAQHTLQFCSAWGAERAELTRVIGDQLDLPSVIESILDSMDKWR
FT                 AFSVFCTKVLTYKEAVERQRQAANRKQIMGHMDSEISE"
XX
SQ   Sequence 6628 BP; 1952 A; 1301 C; 1638 G; 1737 T; 0 other;
     tactactata cgattctatt aacataaata gatttgtggg acaatttcga tagtggtata        60
     taattacttt ctagtgtctc accaagagag gtgatactct tgtaaattaa accaagctat       120
     acaaaatgga catggacaac ataacggaac aaaacgtctc aggttcggat tctgagaaac       180
     ggcacgtggg gggtctcgtc cctgcccccc acgggtcgtc atcctgcgaa gggctgacct       240
     ccctgtccgc ggcgagcggg gggtgtcgac ctgctatcgc cagcatggag aggcttggtt       300
     cctcaatcac gattttaccg ctgaagaaaa agcacaaggc cccctctgga tgtgaaagta       360
     aggctggacc ctcggtagtt tcggagtcca tcgtgattga atcggatgag gagggcgggt       420
     ttgatccggc ttccctgtgt acagtggatc actcggatac ggaggatatg gctgcctctg       480
     gcggttcctc tggtttctcg agacaaaaaa gaaaaggcat taataaggat aagataattg       540
     ctacttctac caacaggaaa aggagaaaga gaggttcccc ctacaaggat gaagaaactg       600
     aggatgatag attcgcggta catttctcag tggacaatag aaagaaagtt gaagatgaga       660
     tggccggcct acctcttgag cacgctactc aacttaatca aaaaattaag gacatgacag       720
     acaaaataga ctctattaga atgagatccc ctggcatcaa gggctcgttt agcgggcaaa       780
     ttaaggtctt cttggaagta atacggagaa caagtgacct catgtccatg aaggcctcct       840
     cgatggagga cccggagttc tggagggcca aatattacga tatggagaag tctgcaaagg       900
     acaacaaacg caaattagac ctcatagaag tagagctaaa agaattaaaa agaagagaac       960
     aaataaatga cgcctacgat cttgattctc acaataagga cttaccttcg atgtcgaaca      1020
     atggaaataa taacagcaaa ttggatgttg ttccttccat cattggtagt ctccgcagtg      1080
     cttctgaaac aaaattaatc aaagacagga taggaatttc caacaagaaa tatcttttaa      1140
     atagtgatag tgatacacga gaacccgatg taagtcgggt ggaaattgac cttgcgatca      1200
     tccgctcttt ggacagactg ggagacggta tgtcgcagct catccgggag acaaggcttc      1260
     tccgtgagga cctcaattcg ggcgagggta ggacggatga gttccattat cctgggtcct      1320
     ccacagattt cactggaaaa cgcaaaggta agaacaaaaa tatcaataaa tcaatccctc      1380
     aatcgagaga ggggaaaagc tacgctgaat ctttgggctc caaagtgcca tctggcagct      1440
     ctgctaaatc taaaaatgtc cagagtgtaa aaaataaagt gagtcgaagc gcagtgattt      1500
     cgtcagatgc tgaaaataaa ccggttaaga aatatagtaa aactatgttt gtgtctaata      1560
     tcaataatgg taataatata actaaaagag tggacattgt tagcatgagc gacgaggaca      1620
     ttttggagaa ctttgtagct gtggatgatg gggagatcga gtggtctgtc cctcgtaata      1680
     gaaaaagcat ccgcaagagg aaaaaagtta gcttgaaatc cacccccatc aaagtcagta      1740
     cccaatcgga tactaatccg gaatatgaga ctatttatga taaatatacc gcgggggata      1800
     taaaaagaaa tgcgaataac gaaattacta ctatcgatag gcataataat tgtattaatt      1860
     cggataatat taataggaaa aaacctgata atagaagttt taaagataaa gtcgaaaatc      1920
     ttaagaagaa ggtgccgcgc acgtcggcga tctctattgt gattgatggt gccgatatta      1980
     catatgcgga gataatgaga ttagcacggg aaaaaatctc gctgtcggac atgaacatta      2040
     gtgatacaaa gataaaaaaa tcaattacgg ggggtattat cattgaaatc ccgggagaag      2100
     attcggattt gaaagcggag ttacttttaa atagtcttaa aaaagttttt aataatataa      2160
     atagaattaa atttaaaaaa ccatcaaaaa actcacaagt aaaactcgta ggtctcgatg      2220
     actcaataac aacttgtgaa ataactaaaa taatcgcgga aataagtaaa tgttctccag      2280
     acaacgtatc atgtagcccg ataagattta ttcgcggggg tctcggggtg gcatatgtga      2340
     gatgcccgat cgcggcggcc gtgagcatcc tggaggccgc aaggatcaac ataggttgga      2400
     cgaccgtaag agtggtaccg gtcgacccga ggcccctaca gtgctttagg tgcctcgcgg      2460
     ttggccacac gctgcaaaga tgcccagagg gaaaagacag gagagcctgt tgctacagat      2520
     gtggaggtgt ggaccacaaa tcctctgcct gcaaaaacaa ggttaattgt ccagtttgca      2580
     ctgacagggg cctaagggcg gatcatctgg ccggcaccac gtcgtgtaaa cccattcctc      2640
     ctgggaaaat attagaaaat aagtctgatg taaataaaga taatgcttct gctggtggat      2700
     ctaataataa taattcctta cctgtactaa tcaatgaggg acggtgacct caggatgaag      2760
     cggagccctc tgcttctgaa atggaaatag aaaaataatt ataattatat tatgttaaac      2820
     aaggtaaaca cgataaacat acttatctgc aatctaaatc actcgaaaac ggcacaggat      2880
     aacctatgcc aattaatgca cgaatataat gctggtgccg caatcatttc ggaaccacac      2940
     tcgattccaa aagaggatga caggtgggta caatcggcgg atgagcctcc tctttccgct      3000
     atattatggc gtagagttcc cggcttattt cttccaatta gaccattgga acgcggatac      3060
     ggcttctgtg tggcgagctg gaacaaactg gttattttca gttgttactc ctctcgcaat      3120
     attgctaatt atgaatttaa cgggtttctg aatgaactat ctctaatagt taacaaatac      3180
     aaacactgtc cgacactagt tatcggagat tttaacgcca gacattccga ttgggacccg      3240
     aaacaatcgg atttgcgcgg ttatcatctt agaaattgga tggaggaggc taatctattt      3300
     ttattaaata aaggttataa ttacacatgt gacagatggc aaggcaaatc tgtcatagat      3360
     ttagcgtttg ccaacctaca ggcgaaaaaa attattaaga gctgtaccgt agaaactaag      3420
     gtggtcaccc tgtccgacca tagactgctt cgtttagaga ttggctcggg tagagcgaga      3480
     gagacattca aaactattaa taaaaaattc gttaaatgga attatcacaa actaaatcta      3540
     gatttgttaa cggctggctc tctcggcttg tcatggtcgc tggatttaac tagtatgaat      3600
     tccgcacgcc tattggtgga atggctgggt gactccctta agagtatttc agatctctct      3660
     atgccgagaa gcaaaggctt ctatagagag tctgcttatt ggtggaatga ggaggtggcg      3720
     acctctcgtc gagcggttat gcgggcgcga agaggtctct ctcgagcgag aaagaaggga      3780
     aatcctacgc ttacaaacat agaatatagg aaatatagag tatccctgcg gacctatagg      3840
     ctaaatatta tcagagccaa aaacggagcg tggaaggaac ttttgaatga tataaataac      3900
     aacccgtgga gtctttctta caaagtagtt atgaaaaagt taaagcctgt tgcacatccg      3960
     gtgtgtgaga ctctctctca ccctgaggtg gaaaacatcg taagcgttct ttttccggat      4020
     gatagtagag aacatatatc tgctaactct ctcccacgct tcgtctggtt ggacgattat      4080
     tctgtcagcc tggcggaact atcgcgggct cttaaaaaat tgcgtggtaa tggaaaggct      4140
     cccgggccag atggagtcct tggaggcatc atcgtgggta gcgcgggaag ttttatggag      4200
     gtctggcgag cctgttttaa tgcgtgtctc aaggaggggg tctttccagc agcttggaag      4260
     atcgccaaat tagttctaat taagaagaaa gatggaatgt ctacagatcc tggaatttat      4320
     aggcctatat gcctattgga tgaatcttcc aagctgtacg aaaggattat cgcctctaga      4380
     ctggtggatc acctgaggtc gaccggttcc ctgtctgaca atcaatttgg tttcagggag      4440
     gggaggtcga ccttggatgc aatcctggaa cttagacact tagttcatga ggagaccgaa      4500
     gcaggtaatg tcgtcatcgc gatatctttc gacataaaaa atgcatttaa cacactaccg      4560
     tggggtgtca ttcgctcggc catggcctcc atggagttcc cgagttatct ccgtagggtt      4620
     atttccgatt acttaacaga cagaagtctg gtttacattg actctgaggg tatcgtgcga      4680
     aggcgggggg tgtaccgcgg tgttccgcag ggttcggttc ttggaccaat cctgtggaat      4740
     atagggtaca acagtgtatt cagcatggac cttccacttg gttgtcatat tctgagatac      4800
     gcggacgata caattctgat cgtttcggag aagaattttg aggcggcatc ccaccttgcg      4860
     atggttgcgt caggcatggt agtaagaaaa atagaagaac ttggccttaa aatctcaccg      4920
     cataaaacgg agattacggc ttttccggcc tctgcagttg ggcatggttc ccataaatta      4980
     attattaaaa acaaggaggt gattgttgct cctaccctga aatatctcgg agttatattg      5040
     gatggggact ggaattttac acaacatttt gaaaagctct atatcaaagt taataaaacg      5100
     ttgggttacc ttaggggaat catgcccaac tgtagaggcc ccaatgagag agtgagaagg      5160
     ttgtatctaa atgtggttct ctcaatgttg ctctatggcg caccggtttg gtcggcctca      5220
     ttgggggaga accggagggc gaggacctta atgcagggga tattgagaag gatcgcgcaa      5280
     agagtgtgct gcgcttaccg cacagtatcc tttgtggcgg cgtccttaat atccgggact      5340
     ccaccgcttg aatttcaggc gcgtagaatg gctattgtct attttaaaac cagaagtgct      5400
     actgaggttg atgaggagat ctctcccggt accagggcat tgtggtacct ggaggcgaag      5460
     gaacaggcgc tgtcggactg gagggagagc ttgtcgaagc tgaatcatac ccaccccagc      5520
     ttcaggctcc gcgaagccct tgttgataga ctgaaagagt gggttaatag aagacatgga      5580
     tgggtcacct accacatgac ccaatttcta acgaaccacg ggtgttttaa tgaattcctg      5640
     cataaaatta ggaaagcaga ttccgcaatc tgttaccact gtctcgatgc tgtggatact      5700
     gctcagcaca ccctccagtt ctgcagcgct tggggcgctg agagagccga attgacgcgg      5760
     gttatagggg atcaattgga cctcccgtcc gttatagaat ctatcctaga cagtatggat      5820
     aaatggaggg ccttctctgt cttttgcaca aaggtactta cctataaaga ggcggtggaa      5880
     agacagagac aggcagcgaa ccggaaacaa ataatgggcc atatggactc tgaaatatcg      5940
     gaatgaaatc actaatataa tctgatttgg caaattggtt ctagtttttt agatttagta      6000
     ttattactat cactatcact attactatta ttattgccat tactattgct gcatattgct      6060
     tttggagggt gactcgggtg ccttttacat gctattaata gtaggtattg ggtactggtg      6120
     tcgcgtacat gtatagagat ttttatcgct cggaccgtat ttgttgctgg ttatttttat      6180
     ctgttgagta gtattgagat gagtaagtta ccttacttca cccgtaatgt agctatattc      6240
     tctcctttga taattcccga caatttatta ttagagcctt cttagaaggc attccggggg      6300
     gagaggcgga gatatgctct agttagtaag cctgcctctc tcccatgtaa gggtctgcta      6360
     ggcatgaggt gagtttttag ctggtaggcg gtcgagatgc gtggatggtt ctgtttggcc      6420
     ggtggattcg tcatctccgt cccttccctc agcatcgaat gtttccgttc cgcctggaat      6480
     gttggatgcg ggttgggata gggggtatgg ggaattcctt actggtcagg aacagaaatt      6540
     cccggaaaca agtctcggtc gaatccagca ctaccctgga ccgggccagg gtgtcttttg      6600
     aagattttct catctcggaa aaaaaaaa                                         6628
//
ID   SART-1_PHu  repbase;    DNA;    INV; 3566 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.03, Created)
DT   11-JAN-2013 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Pediculus humanus corporis.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-1_PHu.
XX
OS   Pediculus humanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Psocodea; Phthiraptera;
OC   Anoplura; Pediculidae; Pediculus.
XX
RN   [1]
RP   1-3566
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 763-763 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   80-90% identical to consensus. Several copies are inserted into
CC   telomeric repeats, like SART, but most are not.
XX
SQ   Sequence 3566 BP; 681 A; 1035 C; 1170 G; 678 T; 2 other;
     gttctggtgt cggcttacgc gtcgccgaat cgtccgttac gggcattcga ggatttcctg        60
     caggcgctcg cgagggagat ggacaggttg ggggactcgc gtcccattct cgtstccggg       120
     gacttcaacg cgaaacacac atcgtggtca ggtacgcgac caacgcgcgc ggccgattst       180
     taagacagtg gttcgactcg cgtcatctcg tcgtgcggaa cgagaagggg gctaaaacgt       240
     gcgtgcgggc caccggcggg tccgcgatcg atctcacggt ttcttccgtc gcggcggcgg       300
     cgcgggtctc cggctgggag gtcctttccg acttcgagtc cctgagcgat cacgcctacg       360
     tggcgttctc gttcggggct cctcggagct cggggggggg cagcctcctc gtccgacggg       420
     cctcgcgtcg tcccgccccg gtggagcctg aggtcgttcg acgacgagcg gctcgccgag       480
     tgtctcgccg cggagcctgg agagagacgt tgctccggcc cgggaagaga agcgcgcacg       540
     atatggcgcg gggagttcgg gacgacttac gacggatctc ggactcctgc atgaagaggg       600
     tcggctcgcg ctcgacgacg cggaaacggc cgaagtactg gtggacggac gagataggag       660
     agttgtggaa ggagtcctgt ctcgcacgtc gccggttcgt cggcagaaaa agacaactga       720
     tcaaacgggg aggacgttac gaggacatcg tgaacgacga cgaactcgcg cgtttaaagg       780
     cggagtggag ggcttcgcgg gtccgggtcc gcgagcgata tggagttcca aggaggcgtg       840
     ttggaaggaa ctcctgagcg aagcggattc ggatccgtgg ggtctcccgt tccgtctcgt       900
     gaccaacaag ctgaggggtt cgtcgggacc gctgacggcc ggcatgacgg aggagtttct       960
     cgccgaagtg atcgcagagc tcttccctcg cgtcgagccg ttcgcgtttc ccccggcgga      1020
     tctctctacg acggaaccgc gaccgcgaca ccgagtgacg gagggggagg ttcgcctcct      1080
     cctcgacgcg gcctcgaaga ggcgctcggc tccgggcccg aacggcgtgc attaccgcat      1140
     cctcggcaag tctgccgggg tgctgtgtgc gcgtctctcg gcgctctaca ccgcgtgttt      1200
     ccgacgccgt ggaaagaagc gaacttggtg ctgctcgaca aaccgggtag ggatccgacg      1260
     acgccgagcg cgtatcggcc gatttgtctt ctcgacgtgg agggcaagtt gttcgagcgc      1320
     gtgatggcgt cccggataga cgaacactta cggtcagggg gagggaggaa cgacctctct      1380
     ccgaatcagt acggcttccg ggcgggccgt tcgacgaccg acgcactcga ccgcgtgtgc      1440
     gccggaatcc gggacactct tcgccggggc ggcgtcgcga tcgccgtctc catcgacgtc      1500
     aaaaacgcgt tcaacacggt accttggtcc gcgataaggg acgggctgac gtcgaagtcc      1560
     gtgcccgact acctcgtgtc ggtgataggg tccttcctct cggagaggaa gatcgcgtac      1620
     gagaaaccgg acggaacgac gggaagggcg gacgtgttct gcggcgtgcc ccagggatcg      1680
     gttctaggac cgctcctgtg gaacatcgcc tacgaccgcg tcctcacccg gaccgttctt      1740
     cccgaaggcg ttcgttgact tgctacgccg acgacaccct gctcctcgcg accggtcgcg      1800
     ggtgggcgga ggttcgcgaa cgcgccgaaa cgggacttaa cgcgacggtg gaggccatcc      1860
     gggacaccgg tctccgggtg tctctgccga agacggaagc ttgcgggttt catcgtccgc      1920
     gaaacccgcg tcctcgcgac ctgtcgtaac cgtggacgac gtagaatcgg agtggggggc      1980
     tcgctgaaat acttgggttt ggttctcgat tccggtcttc acttcgggga acatctggcg      2040
     cacctcggac cgaagatccg agccgtcagc gcgacgttag gacgcctgat gccgaacctg      2100
     cgcggtccgc aggccagggt caggcgatta tacgcgacgg tcgttcactc cgtggccctg      2160
     tacggagctc cggtttgggc cgagtcggtt tcggcagctc ggcctcttcg cgagaaggcg      2220
     atccaactcc aaagggcgtc tctgaacaag gtggcgatgg cgtacaggga cgtcgcggcg      2280
     gaggtggctt gtcttctgtc gggcactccc ccgctcgatc tcctcgcgat ggagagactc      2340
     gtcctctatc gcgaacgggg tcgcggcggg cctaggacag cccgtcaccg cagggaactt      2400
     cgcctcgaac ggtcaacacg tggcaggcgc gattcaacga cgggcgaaac gttacggcgg      2460
     ggaaatcgtc gacgctctcg gcccccgagt gggggactgg gtggggcggg gtcacggaaa      2520
     cttgacctat cgtctcactc aggtcctcac gggtcacggc gtgttcggct cgtacttggc      2580
     gcgcatcggc agagaggaga cggcggagtg ttggttctgc ggtgcgcccg aggacgacgt      2640
     cgagcacacg atcgcgacat gtcccacgtg ggacgtccac aggcagcggc tggtcgaggt      2700
     catcggaccc gacttgtcga tacgcggttt agtgaacggg ttgctccgcg gacctcggga      2760
     atggtccgcg atctcgcgat tttcggaagc ggtcctgcgg acgaaagagg accgcgaacg      2820
     cgaacgggaa aaatccggag ttcggcgtcg cgcgctccgg gaacagggaa gaagaaaaaa      2880
     gaagaaaaac aacggcggca gcggcggtga agaggaaaca atcaacgcct gatcatccgt      2940
     ggagtacggc gacgaactta gcttcgtcgc cggtaagtca aattctttta cttctaacat      3000
     ttcttggggg ttcgtcgatc ccggacgatc cctcgtctgt cttttcctca caatcccgat      3060
     taccctagta ttagaggatg cgatcaacta acacttaact tttaactttg cccttttcag      3120
     gagacgacgg taagtcttta tcccccaccc gatcgcattc tcaggaaaca ggcgagtttc      3180
     ccatcccttt cccccccagc gaaggaccgg aggacactcc cgaaagggac ttgccgaacg      3240
     tcctgggaga tgcgttctcg tcttcgaggt gacggcggaa cggagactag ggcggatctc      3300
     cccaccaaag taatcgtgtg gaacggtaac gttctggctt cccggagagg ggactgactg      3360
     aaatgtaggt actaccccaa cgagcgtccc cccctcttca tataagccac gctattgcga      3420
     catgctcagg agttttagtg ggtatggttc ccggttaggc cttctttcga atcccatacc      3480
     gagccccaca ctccctcttc ggaggggttg tgcgtaatct gcatttctcc tgagatatca      3540
     aaaaaaaaaa aaaaaaaaaa aaaaaa                                           3566
//
ID   SART-1_PXu  repbase;    DNA;    INV; 4759 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-4759
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3095-3095 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Target is unknown.
XX
FH   Key           Location/Qualifiers
FT   CDS           1068..3848
FT                 /product="SART-1_PXu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="KRWRXKTQHXIMTSRATKYLQANINHCARAQDLLIQS
FT                 MAQWSINITVVTEPYLVPTRNNWVGDEDDLAAIAVSNGAAIRKSRKGRGVV
FT                 AALCGEVMVVGAYFSPNRPLSEFESFLGEMDSVLAWCRPYQIVVAGDLNAK
FT                 STVWGCRATDARGELVEEWLASNGLVVLNVGDTDTCVRMQGGSIVDVSFAS
FT                 ADLARGVRDWEVLEGVETLSDHRYIRFDVFPLSGGSGPGRVVSEAGPRWAL
FT                 KKLDXEAAIEASLVASWNPAPXVTAVESESRWLHEAVTHICDVAMPRVVRP
FT                 PTRTAVYWWSEDLGRLRVSCVSARRRYSRYRRRLRVSCVSARRRYSRYRRR
FT                 RRRSGHXEDEERRLYTAYQDAKKALRVAIAEAKEAAWQELLESLDVDPWGR
FT                 PYRLIMSKLRPWAPPLTSSXDPGTLDRVLETLFPSMREDFEAPRMXVAPAT
FT                 SNRDADGEVPEVEERELWAAVARLQAKNTAPGPDGIPGRIWVLALRNGXDG
FT                 RFRDLLSRCLKDHTFPGDWKTGKLVLIGKAGRPADSPSAYRPIVLLGEAGK
FT                 LFERVIATRLSEHLDRVGPNLADCQYGFRRGRSTIDAIARVRAVAEEEVXK
FT                 GGXVLAVSLDIANAFNXLPHACIMEALRFHGVPLYLRETIKAYLSDRTVVY
FT                 PTTTGFGQRRVSCGVPQGSVLGPLLWNVGYDWVLRGPTLGGVSVVCYADDT
FT                 LVLARGGSYREASVVATAGVAQVVGRIRRLGLTVALEKSEALCFHRPRRAP
FT                 PPNAHLIVSGVSIGVGSTMKYLGVVLDSRWKFREHFRRLAPKLARTSFALS
FT                 RLLPNLGGPSASCRRLYAGIVRSMALYGAPIWADALERHNKAQLRRSQRVV
FT                 ALRVARAYRTVSCEAACVLAGTPAMGVGGXXVGGHLLEVRRRQKSGGGPTK
FT                 NLLLNWSGSGDGTSEKKIDLDME"
FT   CDS           join(3..722,578..1108)
FT                 /product="SART-1_PXu_1p"
FT                 /translation="TSTSTPAASSSSSTAPAAQSGQKAKKKAKKKKTAKKQ
FT                 ETERPLPPAPASMKDTMASVVKRGLREKAPAPIRSAPMPKKKEQEKAKPSP
FT                 KLRAPKTSAVVVTVHPTAVEKGVTYAKALAEARQKVNLKDLEIESVRFKRA
FT                 ATGASIIEVSGANSAPKADLLADKLREVFGSGGDVTVSRPTKMAELLVAGL
FT                 DDSVTKEEVTAAVCAKGDCAADRVKVGHSVRRDPASLPSGWHALSKLPKGL
FT                 RHQRRGDSSGLRQRRLRGRPRKGGSLRQERSGLFAVWVACPVEAAKRVVEG
FT                 KLLVGWVSARVKLLERRELRCFKCLHSGHVKARCTAVADRGLQCYRCGQMG
FT                 HRAADCNAAPHCTLCAEAGKAANHRLGSKTCSAPKKRMVRRVFVASSAGPQ
FT                 QAQAPPSGVEAMETENTTSHNDE"
XX
SQ   Sequence 4759 BP; 1021 A; 1253 C; 1539 G; 926 T; 20 other;
     cgacctccac atcgacgccg gccgcttctt cttcctcttc cacagcccca gccgcccaat        60
     cgggccaaaa ggctaagaag aaggccaaga agaagaaaac ggccaaaaaa caggagacgg       120
     aacgtcccct cccgccggcg cctgcatcca tgaaggatac tatggcgtcg gttgtgaaga       180
     ggggcctaag ggaaaaagcg ccggcgccca tcagatcggc gcccatgccc aagaagaagg       240
     aacaggagaa ggccaagcct tcgcctaagc tgcgggcccc caagacctcg gcagtcgtgg       300
     tgactgtaca tcccacggct gtggagaagg gggtcacgta cgccaaagcg ctggctgagg       360
     ctagacaaaa ggtaaacctc aaagatttgg agatcgagag cgtccgcttc aagcgcgcag       420
     cgactggggc ctcaatcatt gaggtctccg gcgccaatag cgcaccgaag gcggacctcc       480
     tcgctgataa gctccgcgag gtgttcggga gcggtggcga cgtcaccgtc tcccgaccaa       540
     ccaaaatggc ggaactgttg gtggcggggt tggatgactc cgtcaccaaa gaagaggtga       600
     cagcagcggt ctgcgccaaa ggcgattgcg cggcagaccg cgtaaaggtg ggtcactccg       660
     tcaggagaga tccggcctct ttgccgtctg ggtggcatgc cctgtcgaag ctgccaaaag       720
     ggtagttgaa ggcaagctgc ttgtaggctg ggtgtcggcc agagtgaagc tcctkgaacg       780
     cagggagctk aggtgcttca agtgccttca ctctggccac gtcaaggcgc ggtgtaccgc       840
     ggtggccgac cgggggcttc agtgctaccg gtgcggccag atgggacacc gcgccgcgga       900
     ctgcaatgct gccccccact gcacactgtg tgcggaggct gggaaggcag cgaaccatcg       960
     cttggggagc aagacatgct cggcccccaa gaaaaggatg gtcaggaggg tgtttgttgc      1020
     gagcagcgct ggcccgcaac aggcacaagc accaccgagc ggtgtagaag cgatggagac      1080
     kgaaaacaca acatcwcata atgacgagta gggccaccaa atacctgcag gccaacatca      1140
     accactgcgc cagagctcag gatttattga tccagagcat ggcgcagtgg tcgatcaaca      1200
     taacggtggt gacggagccc taccttgttc ccacgaggaa caactgggtg ggcgacgaag      1260
     acgacctggc ggcaattgcg gtgtctaacg gcgccgcaat aagaaagtcg cggaaaggtc      1320
     gaggagtcgt cgcggccctg tgcggcgaag tgatggtggt cggggcgtat ttctcgccga      1380
     accggccact atccgagttc gagtcgttcc tcggggagat ggactcggtc ctggcctggt      1440
     gccgcccata ccagatcgtc gtggctggcg atctgaacgc caagtccacg gtctgggggt      1500
     gccgtgccac ggatgcgagg ggggaattgg tggaggaatg gctcgcctcg aacgggctag      1560
     tcgtcctgaa cgtgggggac acggacacat gcgtgcggat gcagggtggc tcaattgtgg      1620
     acgtgtcctt cgccagcgcg gacctggcac gaggcgtccg ggattgggaa gtcctggagg      1680
     gtgtggagac gttgtctgat caccggtata ttcggtttga cgtcttcccc ctctcgggcg      1740
     gttccggtcc cgggcgtgtc gtgtcggagg cgggcccgag gtgggccctg aaaaagctgg      1800
     atakagaggc ggckatcgag gcgtctctgg tcgccagctg gaatccagca ccggamgtga      1860
     cggcggtaga gtccgagtcg cggtggctcc acgaagcggt cacgcacatt tgcgacgtag      1920
     cgatgccccg cgtggtgcgg cctccgactc ggacggcggt gtattggtgg tcggaagatc      1980
     tcggccgtct tcgtgtgtcc tgcgtgtcgg cgaggcggcg gtactctagg tatcgtcgtc      2040
     gtcttcgtgt gtcctgcgtg tcggcgaggc ggcgatactc caggtatcgt cgtcgacgca      2100
     gacgaagcgg gcacawggag gacgaggaga ggcgcctcta caccgcctac caggacgcca      2160
     agaaggcgct cagggtggcc atcgcagagg cgaaggaggc ggcctggcag gagctgctcg      2220
     agtcgctgga cgtcgacccc tggggtcggc catatcggct catcatgagc aagctcaggc      2280
     cctgggcccc acctctaacg tcgagcwtgg accctgggac gctggacaga gtgctggaga      2340
     ccctgttccc ctcsatgagg gaggacttcg aggcaccgag aatggwggta gcgccagcga      2400
     cgtcaaatcg tgatgcggac ggggaagtcc cggaagtgga ggagagggaa ctgtgggcgg      2460
     ctgtggcacg gcttcaggcc aaaaacaccg ccccaggccc cgacgggatc cccggacgca      2520
     tatgggtcct ggcgctacgg aacggawttg acggcaggtt ccgagattta ctttctcggt      2580
     gcctcaagga ccatactttc ccaggagact ggaagacggg gaaactcgta ctgattggga      2640
     aggcgggaag gccggcagat tcgccctcgg cgtaccgccc gatcgtcttg ctcggggagg      2700
     cgggtaagct ttttgagcgc gttattgcga cccgtctctc tgagcacctc gatcgagtag      2760
     ggccaaatct ggcggactgc cagtacggtt tccggcgcgg ccgctccacc atcgatgcta      2820
     ttgcacgggt gagggccgtc gccgaagagg aggtcgwgaa gggcggcktc gtgttggcgg      2880
     tatctttaga tatcgccaac gcttttaacw cgctgcctca cgcctgtata atggaggccc      2940
     tgcggtttca tggggtccca ttatacctgc gtgagacgat caaggcctac ctwtcggaca      3000
     ggacagtggt atatcccaca actaccggat ttggacagag gagagtgtcg tgcggcgttc      3060
     cacaaggttc cgttttaggg ccactattgt ggaacgtcgg ttacgactgg gtcctgcgtg      3120
     gcccgactct cggcggcgtc agtgtcgtct gctatgcaga cgacacactg gtgttggcaa      3180
     ggggcggtag ctatcgggaa gcgagtgtgg tagctaccgc cggagtagcc caagtagtgg      3240
     gcaggatccg gagactgggc ctgacggtgg ccttggaaaa atccgaggcc ctgtgttttc      3300
     acaggcctcg ccgagcgcca ccgccaaacg cccacttgat tgtgagcgga gtttccatcg      3360
     gcgtcgggtc cacaatgaag tacctgggag ttgtgctcga cagccggtgg aaattcagag      3420
     aacatttccg gcggttggct ccgaagctcg cgcgcacctc gttcgccctg agcaggctat      3480
     tgcctaatct gggcggaccg agcgcgagct gtcggcgtct ctacgccggg attgtcaggt      3540
     cgatggcctt gtacggggcc cctatctggg cggatgccct cgagcgccac aacaaagccc      3600
     aactgcgcag gtcgcagagg gtagtggcgc tccgagtggc acgggcatac cgcaccgtat      3660
     catgcgaggc ggcgtgcgta ctggccggga ctcccgccat gggagttgga ggcskckgcg      3720
     ttggcggaca tctactggaa gtccgccgac gccaaaagtc ggggggaggc ccaacgaaga      3780
     acctcctcct gaactggtcc gggagtggmg acggaacaag cgaaaagaag attgatcttg      3840
     acatggagtg aggagttgtg gatgtcccgg gcgggtaagt ggacattgga cgctgtccgc      3900
     cccagacttc aagactggct ggacaggcgg tgggggcatc tttcctaccg gctggtgcag      3960
     atgctgagtg gccacggctg cttcggcaaa tatctgcacc aaatagccgg tagggaagca      4020
     acacctcaat gccaccactg tcctgcagca ttagatgacg tgatgcacac catttttgac      4080
     tgtccggcgt gggaagccga gaggcgaccc atagcccaca ttttagatac gacgacactg      4140
     actggggtgc tcgacaggat gctccatagc gagcacgact ggggagcatt ccagcagttc      4200
     tcagaagacg ttctgaacac gaaggaagaa gcggaaaggg cgagagagac tgatccagcc      4260
     tccgcccctc gtcgtcaaag gagaactggc cgacgccggc acatattcca ccgccaggcg      4320
     taggctaggt acgtattgga gatttatata tatatatttg cagaagttat atttatattc      4380
     tatattttat atttaatatt tatatgacca tttgtaaata tatagactat aaggcgttag      4440
     tgtaagtgtt atattgttat tattattatt attactattg ttactttata cacatacacg      4500
     taatggttaa ggagagatta tttatttatt atttatttat tactcagtta ctttatacac      4560
     ttgttgttat tgttatgttt agtgaataaa taataaataa atgtaaggag agctgtgcaa      4620
     acagcagcac aggtcgaaat cctggttaag gcctagctga cacaggatga gaccaatgtg      4680
     tgaagagggc ccgaggggtt ttagtgggta tggccgaacg actttaggcg agtcccacac      4740
     tccctgcgcc actgtacaa                                                   4759
//
ID   SART-2_APi  repbase;    DNA;    INV; 1837 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-2_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1837
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 764-764 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   Two copies in tandem sandwiching telomeric repeats.
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TTAGG)n in the opposite
CC   direction to TRAS1, between TT and AGG.
CC   gb|ABLF02041886.1|  10227-8930 & 12118-10282.
XX
FH   Key           Location/Qualifiers
FT   CDS           239..1618
FT                 /product="SART-2_APi_1p"
FT                 /note="3 zinc fingers."
FT                 /translation="MEVKSRNIVTAPGASDPQVPATVSGAGAKAGSKVAGS
FT                 LWSSSHDREGAGVPSLAPATLPTTGAVAETNIDMKIIEDLEKDMMDVDDVT
FT                 LSGWVCETWEGLDDNIKKVDALVTRLFAFTSTTKNAHKEIKMMSAELKDVM
FT                 KQVKRPMLELGVIAEKTYEKMKDASALNASLVAAAAVAASTPEKKVAEKKK
FT                 EKGATQENSENLTERKKKKSKMKPGNKKIHVAPSQGITISGKGVSTYSDMV
FT                 KRLKEEIDLKTLGVQIKTMKRTKDDGIFMLVGKGAKAADGAKKLRRAAEDA
FT                 LGGDVEVKDSSRPCLIEIRGISQEETEEDVVQGVCRYGAIPEEVVVKKMEK
FT                 SFGGMQRAFVSVSAATADRVIAGGRVLVGLISCGVRLKGNPPIRCYKCHGY
FT                 NHKAFSCRGPDRSKLCMTCGGEGHLGRQCRSAPNCVLCKELKRQADHYPGS
FT                 GRCEAFRKARPNNRS"
XX
SQ   Sequence 1837 BP; 587 A; 386 C; 513 G; 351 T; 0 other;
     ccccccccac gggatccgcc ttgacgtggc gggggggctt gcgggctctt aaccgagtct        60
     tacaaagcga tcctggtctt aattagacca atcacagagc ctgaccttaa ctggtcgggc       120
     aggtttggtc cacctgcaag cgcctgctaa cggacatagg tgaaggcaac actgaactaa       180
     attccccctg gcggcagggc taaaacgtaa gggagacaac cctttaaaaa aacacaatat       240
     ggaagtcaaa agcagaaata ttgttactgc accaggggcg tcggaccccc aggtgccggc       300
     aacagtgagt ggagccgggg cgaaagccgg gtccaaagta gcgggctcac tgtggtcgtc       360
     atcccacgac cgtgagggtg cgggggtgcc cagcctggcc cccgccactc taccaactac       420
     aggagctgta gccgagacga atatagatat gaaaataata gaagatttgg aaaaggatat       480
     gatggacgta gatgacgtaa ccctcagtgg ttgggtgtgc gaaacttggg aaggcttaga       540
     tgacaatata aaaaaggtgg atgcgttagt cactagactt ttcgcgttca cctcaacaac       600
     gaagaacgct cataaggaga ttaaaatgat gagtgccgaa ctaaaagatg tgatgaagca       660
     ggttaaacgt cccatgctgg aactgggcgt tatcgctgaa aaaacgtacg agaaaatgaa       720
     ggatgcatcg gcactaaacg cgagcttagt cgctgcagca gccgtagctg cctctacacc       780
     ggaaaaaaaa gtagcggaaa aaaagaagga gaaaggtgca acacaggaga acagtgaaaa       840
     tctcactgag agaaaaaaga agaaatccaa aatgaagcca gggaacaaaa aaatccatgt       900
     tgccccttcc caaggcatca ctatatcagg aaaaggagta agtacctatt ccgatatggt       960
     aaagagactt aaagaagaaa ttgatctgaa aacactagga gtacagatca aaacaatgaa      1020
     gaggacgaaa gatgatggga tcttcatgct ggtcggcaaa ggggccaagg cagcagatgg      1080
     agcaaaaaag ctaagacgag cagccgagga cgcactgggc ggtgacgtcg aagtcaagga      1140
     ttcgagcagg ccctgcctca tcgagatccg gggtattagc caagaagaga cagaagaaga      1200
     cgtcgttcag ggagtttgcc ggtacggggc aataccagaa gaagttgtcg taaaaaagat      1260
     ggaaaagtcg ttcggaggaa tgcagagggc tttcgtctct gtctcagctg cgacagctga      1320
     tagagtcatt gccggaggtc gcgtcctggt cggactgatc tcgtgtgggg ttcgcctgaa      1380
     aggcaaccct ccaattagat gctacaaatg tcatggatac aatcacaagg cgttctcatg      1440
     caggggcccc gataggagca agctgtgcat gacgtgcggt ggtgaaggcc acttagggag      1500
     gcagtgtcga agcgctccta actgcgtcct atgcaaggag ctgaagcggc aggcggacca      1560
     ctatccaggg agcggtagat gcgaggcttt cagaaaggcg agacctaata accgtagtta      1620
     agaattctta agatgtgggt caaagaccaa aacgaggggg ttagaggccc cctattttga      1680
     tgtaaaaata gcgcaaattg tgtttttata tgtatattta ttgtacttat tgttcacaat      1740
     aaacgatggt ggccgggagg aagtaatgct aacgcagttc cctcccggtt atcgattcta      1800
     acagcgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa                               1837
//
ID   SART-2_PXu  repbase;    DNA;    INV; 5440 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-5440
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3096-3096 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. Target is unknown.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2253
FT                 /product="SART-2_PXu_1p"
FT                 /translation="MDTTNKXXTTREGPACGESLGGSDSRPIGPIVYGGAI
FT                 RRVREGVLGLDGGESERRLSDSESDSRSSMVSVSSRFGSMESLDHDGPGRY
FT                 WSEGRGQKRPRDLELSGSSTDTPAKGVHKRRGRGRPPTTGEYVGLAAAKES
FT                 LRKATEAEIRARAEAEMLESVLEARKTRSALTTAGSSLDPRAAENDEEDTA
FT                 TTVLQRIGASLEVVEKVAKKSSNLKGTFVRALHDAVNAIKEDVAGLAQRSI
FT                 SEETRALQADNTRLQAQMTSLRKELSELRQEMEQVRKQGSANACMDVTMEA
FT                 VPVRPPKPQAEPSLEDICRTVMVQVGGMLNARLASLEDRLLPERNLRPPLA
FT                 SDRKKEARTFATVTAKPTPAPASVLNGGTKAPPVPAQPGPSGLTRQAPAAQ
FT                 PKKGKKGSKKGAKKKKKTRPPTGENTKSSPVAPVTSSNALPPRPPNPDALE
FT                 ENWITVGRNGKAQRHKPKAAPVQAPTSAPAPPPQRLKVPRSSAVVVTLTEA
FT                 AINKGLTYSGVLKEAKSKLDLKETIGVEAVQFRRAVTGATIIRIPGATSAS
FT                 KADVLAQKLQELYHDDDIKVSRPEKLVDVKIEGLDDSTTPEEVKAAILKKG
FT                 ACTGDQVRTGRLRQNRSGLFDIWAQVPVAAAKKLTTGRFLVGWVAAKVTVG
FT                 RPRELRCYRCLQQGHVASRCDAEDRSRLCYKCGQEGHKAASCPSQPNCILC
FT                 TAAGKDAKHRLGSLKCSAPRKTVPRRALTDVARSAPPPSGEEMEIAEVVQN
FT                 "
FT   CDS           2258..5389
FT                 /product="SART-2_PXu_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MALRLLQTNLNHCARAQDLFIQSLAQWSIDLAVVSEP
FT                 YLVPDRSNWVGDLEHLVAXYTGGHPPIASVKKXRGCVGAKFPGMVLIGVYF
FT                 SPNRSLSDFEAYLEEVSSLVRWGRPLGVVVAGDLNAKSRAWGSSVSDSRGE
FT                 VLLAWMAQHDLTPLNTGSXHTCVRMQGGSVVDVTLASPALACRVQDWEVLT
FT                 EVETLSDHRYIRFDVLPSSAPPTSRSTVTPPEIGXMWSLRSLDREAAELAA
FT                 IVGTWSQGMEXKGVDDGAQWLGEVLAHISDCAMSKVRPSPRRXNRVYWWSD
FT                 NLSQLRSACVLARRRYTRYRRRRPGWEESEERRXYTEYQXAKKALRCEITA
FT                 XKDQAWEEFLXTLEVDPWGRPYKLVMSKLRPWAPPLTSTLDPALLTSIVST
FT                 LFPPSAHNTGFDFPDSVPPGSVPGVSESEINSAKTKVQSKRTAPGPDGIHG
FT                 KVLALSLNHGLDEQLKTLLTMCLEEGXFPSKWKTGRLVLLRKPGKPENSPS
FT                 AYRPIVLLDEAGKLLERVIAGRINDHLSSAGPDLADTQXGFRRHRSTIDAI
FT                 SKLRSICEEAKSQGRVTIAVSLDIANAFNTLPWDSIMAGLEHHHVPPYLRR
FT                 IISXYLRDRRIVFPTQNGWENYNISCGVPQGSVLGPLLWNIGYNAVLRGAL
FT                 VRGVQLLCYADDTLVVATGTDFREAKLRATAGASHVSAKIRSLGLRVALDK
FT                 SEAIYFPGNRRPPQSGLEIIVGGTPIPIRGSIKYLGLTLDSRWSFRPHFAE
FT                 LAPKLDATAAALSRILPNIGGPSSKRRLLFAGVLRSKALYGCPVWANDLCA
FT                 QNRAMLRRSQRAVAIRVARAYRTVSXDAVCVIAGLLPWHLDAAALASVYWR
FT                 RASRREEGEQPSPEEMKEWRVRAQNRAMDRWKEELGSXRAGSWTVDAIRPR
FT                 LRXWVNRRWGHLSYRLVQMLSGHGCFGKYLHQIAGREPTPRCHHCPEAXDS
FT                 VAHTLFECPAWEAERRPIANSTGIDASSLAEVISKILQSEESWKAFHDFSE
FT                 HVMAIKENAEREREADPASAPLRRRRAGRRRRVFIRQA"
XX
SQ   Sequence 5440 BP; 1221 A; 1571 C; 1680 G; 927 T; 41 other;
     atggacacga cgaacaaaga wmaaactacc cgggagggtc ccgcttgcgg ggaatccctt        60
     ggtgggtcgg acagccggcc catcggcccc attgtatacg ggggggccat tcgccgtgtg       120
     agggaaggag tgttaggttt agatggagga gagagtgaga ggagattgtc ggactcagaa       180
     tcagacagca ggagttcgat ggtgagcgtg tccagccgct tcggctccat ggagtccctg       240
     gaccacgacg gcccaggaag gtactggagc gagggccgcg gccagaagcg gcctagagat       300
     ctggagctga gtggcagctc cacggacacc cccgctaagg gcgttcacaa aaggagagga       360
     cgaggtcgtc caccaaccac cggggaatac gtcgggctgg cggccgcgaa agagtccctg       420
     cgtaaggcga cagaggcgga gattagggca cgagccgagg cggagatgct ggagtcggtg       480
     ttggaagccc gcaagactcg ctctgccctg accacggccg gatcatcgct cgacccgaga       540
     gccgcggaga acgatgaaga agatacggcg accaccgtcc tccaacggat cggggccagc       600
     ctcgaagtag tggaaaaggt ggccaaaaag tcatccaacc tgaaggggac tttcgtgcgc       660
     gcactacacg acgctgttaa cgccataaaa gaagacgtcg ctggcctcgc gcagaggtcg       720
     atatcagagg agacgcgtgc cttgcaggcc gacaacaccc gcctgcaagc ccaaatgacc       780
     agcctccgca aggagctgtc ggaactacgt caggagatgg agcaggtgcg gaaacagggt       840
     tccgccaatg cctgcatgga cgtgacgatg gaggccgtcc ctgtccggcc cccaaaacca       900
     caagcagagc cctccctaga ggacatctgc cggacggtca tggtccaggt gggcggcatg       960
     cttaatgccc gcctggcttc cctggaggac cggctgctgc cggaaaggaa cctgcgacca      1020
     ccattggcgt cggacaggaa aaaggaagcc cgcacattcg caactgtgac cgcgaagccc      1080
     acacccgcgc cagcttcggt gctgaacggt ggaacaaaag cgcccccggt gccagcgcag      1140
     cccggtccca gtggactcac gcgccaagcg cccgctgcgc agcccaagaa gggcaagaaa      1200
     ggctccaaaa aaggagcaaa gaagaagaag aagacccggc cgccgacggg cgagaacaca      1260
     aagtcctccc ccgtcgcccc cgtaacatca tcgaacgctc ttcctccccg tcctcctaat      1320
     ccggacgcgc ttgaggagaa ctggataacc gtagggagaa atggaaaggc gcaacggcac      1380
     aagccgaaag cggcccccgt gcaggcacct acatctgcgc ctgcaccgcc gccgcagaga      1440
     ctaaaagtgc cccgaagctc tgcagttgtc gtgacgctta ccgaagcggc aatcaataag      1500
     gggctgacat acagcggcgt ccttaaggag gcgaagtcaa agctggacct aaaggagaca      1560
     attggcgtcg aagcggtgca atttcgtcgg gcggtcaccg gggctactat catccgcatc      1620
     cccggcgcca ccagcgcctc gaaggccgat gtcctggcgc agaagctcca ggagctatac      1680
     cacgacgacg acatcaaggt ctccagaccg gagaaattag tcgatgtcaa aatcgaaggt      1740
     ctggacgact cgacnacacc ggaggaggtn aaagcngcca tccttaagaa aggngcatgc      1800
     acgggngacc aggtccgaac cggccgactc cgccagaaca gatcggggct gtttgacatc      1860
     tgggcccagg tccctgtggc agcagcgaag aagctgacga cgggccgctt cttggtgggc      1920
     tgggtggctg cnaaagtcac cgtcggcaga cccagggagt tacgctgcta tcgctgcctg      1980
     cagcagggnc atgtggcnag ccgctgcgac gcggaggacc gcagccggct ctgctacaaa      2040
     tgtggtcagg agggtcacaa ggccgcgtct tgcccgtcgc aaccgaattg catcttgtgt      2100
     acggcggcgg gcaaggatgc caaacaccgg ctggggagtc ttaaatgctc ggcgcccaga      2160
     aagacggtcc ctaggagagc gctaacggac gtagcacgca gcgcgccccc accgagcggg      2220
     gaagaaatgg agatagcgga agtcgtccaa aattagtatg gccctaagac ttcttcaaac      2280
     aaaccttaac cactgcgcca gagcccagga tctgtttatc caaagcctgg cgcagtggtc      2340
     aatagatcta gcggtggtgt ccgaaccgta tctggttccg gacagaagca attgggtagg      2400
     ggatctcgaa catcttgtcg cgntatacac aggcggccac cccccaattg cctcggtgaa      2460
     gaaagsaaga ggttgtgtag gtgccaaatt tcccggcatg gtgttgatcg gtgtttattt      2520
     ctctcccaat cgttcgctgt cggacttcga ggcgtatttg gaagaagtca gctcccttgt      2580
     ccgttgggga agaccgctcg gggtcgtcgt agccggggac ttaaacgcta agtcgagagc      2640
     ctggggatcc tccgtctctg acagccgcgg cgaggttcta ctagcgtgga tggcgcaaca      2700
     tgacctgacg ccactsaaca csggctctgn acacacctgc gtgcgcatgc agggcgggtc      2760
     cgtcgtggac gtcacccttg cgagtcccgc cctggcatgc cgcgtgcagg actgggaagt      2820
     gctgactgag gtggagacgt tatcggacca tcgctacatc cggttcgatg ttctcccctc      2880
     gtcagcaccc ccgaccagtc ggagcaccgt cactcccccg gagataggam agatgtggtc      2940
     attaagatcc ttggaccgag aggctgcaga actcgccgcc atagtgggga cgtggtccca      3000
     aggaatggag ganaaaggcg tcgacgacgg ngcgcaatgg cttggcgaag tcctggcgca      3060
     catctcagac tgcgccatga gcaaagttcg gccgtcgccg cgacgacsta atcgagtgta      3120
     ctggtggtcg gacaaccttt cgcagttgcg ctccgcctgt gtgcttgccc gccgccggta      3180
     cacccgatac mgaagaagac gccccggatg ggaggagtct gaggaacggc gtmtctacac      3240
     cgagtaccaa gasgccaaaa aggcccttcg gtgtgagatc accgcckcca aagaccaggc      3300
     ctgggaggag tttttgasca ctctagaggt ggacccatgg ggccggccgt acaagctcgt      3360
     catgagcaag ctgcgtccct gggctccacc ccttacctct accctagatc cggcactttt      3420
     aacatctata gtgtcgacac tcttccctcc cagcgcccac aataccggat ttgactttcc      3480
     cgactcggta cctcccggtt ctgtcccggg ggtatccgag tcggaaataa actcggctaa      3540
     gacgaaagtg cagagcaagc gcaccgcccc aggtcccgac gggatacacg ggaaggtgct      3600
     tgctctgtca ctcaatcacg gactagacga acagctcaaa acattgctaa ccatgtgtct      3660
     ggaggaaggc aawttcccgt caaagtggaa gacgggaagg ctggtcctgc tgaggaaacc      3720
     cgggaaaccg gagaactccc catcggccta tcgcccgata gttctactcg atgaggccgg      3780
     caagttgctg gagagggtga ttgccggtcg catcaacgac catctatcct cagcggggcc      3840
     agacttggcc gacacccaat wtgggttcag gcggcaccgg tckacgatag acgccatctc      3900
     caaactccgg agcatctgtg aagaggcgaa atcccagggc agggtaacga tagcggtgtc      3960
     gctcgacatt gctaacgcgt tcaataccct gccctgggac agtataatgg cgggactmga      4020
     acaccaccat gtccccccgt acctgcggcg aattatctcc tsctacctgc gggacaggag      4080
     gatcgtgttc cccacscaaa atggctggga gaattataac atctcgtgcg gagttccaca      4140
     ggggtcggtc ctagggccgc tcctgtggaa cattggctat aacgcggtgc tgcggggagc      4200
     gttagtccgt ggagtgcagc tcctgtgcta cgcggacgac acgctcgtcg tggcmacwgg      4260
     caccgacttt agggaggcca agctgcgggc cactgccggg gcctcacacg tctcggcaaa      4320
     gatccgtagt ttgggcctga gggtcgccct cgacaagtcg gaggcgattt acttccccgg      4380
     caacagaaga ccgccccaat cggggcttga aatcatagtt ggaggtacac cgattcccat      4440
     tcgaggcagc atcaagtatc taggtcttac cctcgattcg aggtggagct tcaggccaca      4500
     cttcgccgaa ttggccccga agctcgacgc cacggctgcg gctttaagcc gcatccttcc      4560
     caacatcggt ggcccgagct cgaagcgccg cctcctattc gcgggagtgc tgaggtcgaa      4620
     ggccctatac ggatgtccgg tttgggccaa cgacctctgc gcccagaata gggcgatgct      4680
     tcggcggtcg cagcgtgctg tggcaatcag ggtcgcgagg gcataccgca cggtgtcgtw      4740
     cgatgccgtg tgtgtcatcg cgggcctatt gccatggcac ctggacgcgg ccgccctggc      4800
     gtcggtctac tggcgcagag ctagtaggcg ggaagaggga gaacaaccat cmccggaaga      4860
     aatgaaagaa tggagagtcc gcgcccaaaa tagggcgatg gacagatgga aggaagagct      4920
     agggtccksc agggccgggt cgtggacggt ggacgcgatc cgcccgagac tgcgggamtg      4980
     ggtgaacagg cggtgggggc acctctccta ccggctggtg cagatgctgt ctggccacgg      5040
     ctgttttggc aagtatctgc accaaattgc cggtagggaa ccwacaccka ggtgtcacca      5100
     ctgccctgaa gccmacgact ccgtcgccca cacactgttc gaatgtccgg catgggaagc      5160
     cgagaggcga cccatcgcca atagtactgg aattgacgcg tcgtcactcg cggaggtcat      5220
     ctccaagatc ctccaatccg aggagtcgtg gaaggcgttc cacgatttct cggagcacgt      5280
     gatggccatc aaggagaatg ctgaaaggga gcgtgaggcc gatccggcat ccgcccctct      5340
     ccggcgaaga agagcaggcc ggcgccgacg ggtatttatc cgccaggcgt aggcttkgcg      5400
     catgtaggag aatttatatt tacaagtgtt atatttatgt                            5440
//
ID   SART-3_APi  repbase;    DNA;    INV; 1857 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-3_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1857
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 765-765 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   Two copies in tandem sandwiching telomeric repeats.
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TTAGG)n in the opposite
CC   direction to TRAS1, between TT and AGG.
CC   gb|ABLF02041886.1|  1-724 & 814-2670.
XX
FH   Key           Location/Qualifiers
FT   CDS           444..1628
FT                 /product="SART-3_APi_1p"
FT                 /note="3 zinc fingers."
FT                 /translation="MYSFSSTTKNLHKEMKSWCAELKAKMKKTLEASEILK
FT                 PYVDKAGDRILDLSSSLLEASIRPIPPTVETTDKETNTEPAAPPLAMRSDS
FT                 NPPRCHINDQKKTYPRNHPAERDSLREGKKKKAKMKHEGTCSRQATTEGAG
FT                 RKERGLRIRNPYKKRNNEAVVVRPSGQTTYADVAKKLKTSINVSTLNVNIK
FT                 GMKMAKSGDLILQLDKGPKQEEEAARLKEAVIQTLGSDAVVEHTPRTETLT
FT                 IRDLSPDTTTEEITQAVVNTTGTTPGSVEIIRLLPSYGGNVMAVIKTKQKV
FT                 ASTLLTLGRLIVGLVRCRVKLKTQMTRCYNCHSFGHYKVSCRGPNRTALCM
FT                 TCGEGNHKAKDCKAPPRCVLCEESGHDKDHYPGSQACHVCREAKKNINNFR
FT                 Y"
XX
SQ   Sequence 1857 BP; 625 A; 461 C; 471 G; 300 T; 0 other;
     ctcccccgac ctcccccgac ggaacccacc ttgtcgtggt gggggggctc actaaccatt        60
     aaattggttg gtgccaagag gttccaccca taaactgcct ctgcccttca ttgggtgggg       120
     acagttagga ccggtctacc tgctaccaac agcaaacaga ccctgaagga cacagtaaac       180
     cacgagaagg acactccaaa ccaaaaagat ggatcaaaac gtaagcaaaa gaagcagtac       240
     ccctgtctca ggcccccacg gattcggggg ggggggccgt ccatcaggct aaaaacactg       300
     gaaactggaa actaggacat gaagattatg aagaaccaac caaagaggaa acaatagctg       360
     acgaagacct tagcaattgg gtgtttgaaa ctcatggcca cctacatgga ctaatagaag       420
     aagtggttac cctgactgag aagatgtatt cgttctcgtc caccaccaaa aatctccaca       480
     aagagatgaa aagctggtgc gccgagctga aagcgaaaat gaagaaaacg cttgaggcaa       540
     gcgaaattct caagccatac gtggacaaag cgggtgacag gatactggac ctctcttcct       600
     ccctgctgga agcgagcatt cggcctatcc caccaaccgt agaaacaacg gacaaggaga       660
     ccaacactga gccagcggcc ccaccactgg ccatgagaag tgacagcaac cctcctagat       720
     gtcacatcaa tgatcaaaag aagacgtacc caagaaatca ccccgcagag cgagattcac       780
     ttcgggaggg aaaaaagaag aaagccaaga tgaaacatga aggcacttgc tccagacagg       840
     ccacgactga gggcgcagga cgcaaggaac gaggactccg gattcggaac ccctacaaga       900
     agagaaacaa cgaagccgta gttgtccgcc cttccggaca gacaacctac gccgacgttg       960
     ccaagaagtt gaagacgtcc ataaatgtca gcacgctgaa cgtgaacatc aaaggcatga      1020
     agatggcgaa gtcaggagac ctcatactcc agttagacaa gggccccaaa caagaagaag      1080
     aagcagcgag actgaaggaa gcggtcattc aaacgctggg atccgacgct gtggtggaac      1140
     acacaccacg gacggaaaca ttaacaataa gagatctgag cccagataca acaacagaag      1200
     agatcacgca ggcggtggta aacacaacag gtaccacacc agggtcggtg gaaataatca      1260
     gattgcttcc gtcatatgga ggcaacgtga tggcggtgat taaaacgaag cagaaagtag      1320
     catccacgct actaactcta ggccgcctca tcgtaggtct ggtgcgatgc cgtgtcaagt      1380
     taaaaactca gatgacgaga tgctataatt gccacagctt cggacactac aaagtctcgt      1440
     gcagaggacc caaccggacg gcactgtgca tgacctgcgg agaaggaaac cataaggcga      1500
     aggactgcaa agctcctcca agatgcgtcc tatgcgagga atccgggcac gacaaggacc      1560
     actatccagg cagccaggcg tgccatgtat gcagagaggc gaagaagaac ataaataact      1620
     ttagatatta agtacattgt gcgccgaagg cgaaactaga gaggatagag cctctcagac      1680
     aatgtataat taaacatgtg aggtcacaag cagggggatt gtccctgcgc gcgaccagct      1740
     aaacttgtaa attgacgcca ataaatgatg ggaactgggg ggtgaaatga tctagcggtc      1800
     agtaccaccc tcagctctcg atacacatgt aaaaaaaaaa aaaaaaaaaa aaaaaaa         1857
//
ID   SART-4_APi  repbase;    DNA;    INV; 5106 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-4_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-5106
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 766-766 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   This family is inserted between TT and AGG of telomeric repeats,
CC   like other SART elements. This sequence is generated from two
CC   >98% identical copies in ABLF02012460 and ABLF02010223.
XX
FH   Key           Location/Qualifiers
FT   CDS           452..1810
FT                 /product="SART-4_APi_1p"
FT                 /note="3 zinc fingers."
FT                 /translation="MSTMSRLKNIIKQQNKMLSNLQEVTDHLNVVKKKTSS
FT                 QQIRDAIDAVVEAAESLGPNKNSLNGAFLDVEKAASRVTSEASEQGAASTQ
FT                 KYEAIMKVCEELKVSVAKQQEDINTLMRSQTPPHPTYATQARAQQSKPTML
FT                 QKHNTQEAQPQHSSQAKDENPADSEWQTVKNPRRANRGPMKKRTENKRKWQ
FT                 KPPPLDAIAVKPREGETAAEILKAIKQDVEIDEIGARVSTFTESRSGEIII
FT                 KLTSKDEKRAALEEELRNKLGSRAAVRGLTNFEDIEIQDLDSITTNREVKT
FT                 GIRQVLGTHADDQNIKVMSLRQSFRGTQRATVRMKGTDAHKLEKIGRVKIG
FT                 WVYARVKIKIKATKCYKCLGYGHRKHACTGTDRSEACCLCTEKGHKASSCN
FT                 SLPKCAACQDLNEQTDHYPGSGKCTAYRRAMASNKTNIRANEQRGSTPDGV
FT                 TQTRATNA"
FT   CDS           1806..4724
FT                 /product="SART-4_APi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPKYLQINLNCCKAAQALLHQVAAEEEVDFVLTSEYN
FT                 REEGSNWYADTTGKAAIVNTNKTRLNKEGLGEAGFRWVEVHGLRLYACYWS
FT                 PNSTIQEYKDFVNRLERSIRSEATEILVTGDFNAKHAEWGCPKNDKRGDIL
FT                 LDMINSAGLVMCNKGQESTHAKGSIIDLTIATPRTAQSMTKWKVLDRESLS
FT                 DHYYILFETTPGLPKNELRRNRIDAKKLETLLKSDDLSRTLDMCTDANQSA
FT                 LAITDAING*RLTGHSGKRARKSVHWWSPEIYTLRNSANHLRRVYQRERKK
FT                 HGLAGSTVAQSNAKAAKRALANAIKRAKETAWRDLCDKVQNDTWGLPYKLV
FT                 MDKLTRQPPIPELDTPGRLRRIVDGLFPQHPLRDRISWPPNPSSHPSRRID
FT                 EAELKDAARSLKQKIAPGPDGISNETVKNIVTLNPHALLKVYNTCLEQGTF
FT                 PETWKKARLVLIRKGDKPLDAPSSYRPLCLLDCLGKLFEKILDNRLRNFLD
FT                 ANDGLHDRQFGFRKGRSTIDALNTLKDTITPNRKIGILTLDIKNAFNSAPW
FT                 KAIMEALYEKEVPGYIQQMINSYLENRTLSFG*GDEETRIDVTCGVPQGSV
FT                 IGPTLWNILYDGLLRTRLPVGVEYLAFADDVALVARARDSIDIERLLTSSA
FT                 EKVHEWLTLVGLSLAEQKCEAMIITKTRTRNEINIMVNGHQVPSTNCIKYL
FT                 GLHINQKWNFTEHAKITAAKAGNIVSRLSRIMPNISAAKPTKRKLLSNVAH
FT                 SVMLYGAPVWAGEMSAEGWEELLNVQRRICLRVASAYCTTSRYAICVISGI
FT                 APLNLLAKERKEIHDKKRNREHGAQTGNILNSWQTEWDSSKKGRWTHVLIP
FT                 NIGPWIGRRHGQINYHLTQVLSGHGCFAADLKRFGKLDSSECWYCGNPADD
FT                 AEHTVFACDAWHTRRRQAEMAMETELTPKNLIPTMLASKGNWDIVSELIVG
FT                 IMKEKETEERRRQATGTV"
XX
SQ   Sequence 5106 BP; 1649 A; 1329 C; 1343 G; 785 T; 0 other;
     atgacccccc cgacggaacc caccttgccg tggtgggggg gctcacaggc caaatggccc        60
     gtgctaagag gttccaacct ggcggtaggt ctaaaacgca agggagaaaa cccttcaaaa       120
     aacacaatgt ggaagttaac aacggacata ttgttaccac cccaggggcc aaggaacccc       180
     aggggtcgca gtagtgggtg gatccggggt aacaaccggg tccaacgtag cgggcccact       240
     acggtcgtca tcacacgacc gtgagggtac agaggtggcc agccaggccc ctgccactct       300
     agcgactact agcgctgaga aaggtgtctc ttctgcgtca ggaaccacaa gccgagctga       360
     caactgccaa caaggtacaa aaagcaagga ttccaggctg agagaaaaac tggtatcctc       420
     tgcttccaac ggagccaaag caccagacct catgtcaacg atgtcgagac tgaagaatat       480
     tattaaacag caaaacaaaa tgctaagcaa tctgcaggag gtcaccgacc acctgaacgt       540
     ggtgaagaag aaaaccagtt cccaacagat cagagatgca atcgatgcag tcgttgaagc       600
     agctgaatca ctaggcccga acaagaatag cctcaatggt gcattccttg acgtagagaa       660
     ggcggctagt agggtaacct ccgaagcctc cgaacaaggc gcagcgagca cccagaaata       720
     tgaagcgatc atgaaggtat gtgaggaatt aaaagtctca gtcgctaagc agcaagaaga       780
     catcaacacg ctgatgcgct ctcaaacgcc tcctcatccc acgtatgcca cacaggcaag       840
     agcgcaacaa tccaagccta ctatgctgca gaaacacaac acccaagaag cccagcccca       900
     gcacagcagc caggccaaag acgaaaaccc tgcggacagt gagtggcaga cggtcaaaaa       960
     tccccggagg gcaaacagag gacccatgaa gaaaaggacc gaaaacaaaa gaaagtggca      1020
     aaaacctcca ccactagacg ccatagcagt gaagccaagg gaaggcgaaa cggcagctga      1080
     aattctaaag gccataaaac aggatgtcga gatcgacgaa ataggcgcac gagtgtccac      1140
     tttcacagag agccgaagtg gggagattat catcaagcta acctccaaag acgaaaagag      1200
     ggctgcactt gaggaggagc tgagaaacaa actcggctca cgagccgcag tgcgtgggct      1260
     caccaatttt gaagacattg agatacaaga cttagactca atcacaacaa acagggaagt      1320
     caaaacaggc attcgccagg tgctaggcac gcacgctgac gaccagaaca tcaaagttat      1380
     gagcctccga caatccttca gggggaccca gagagcaaca gtgagaatga agggcacaga      1440
     cgcccacaag ctggaaaaaa taggacgagt caaaataggg tgggtctacg ccagagtaaa      1500
     aataaaaata aaggcaacca agtgctacaa atgccttggc tacggacacc gaaaacatgc      1560
     ctgcacagga acagaccgct ccgaagcgtg ctgcctatgc acagaaaaag gacacaaggc      1620
     atcctcatgc aactccttac caaagtgcgc tgcatgtcaa gacctaaacg agcaaacaga      1680
     tcactaccca ggaagtggga agtgcactgc gtaccggaga gcaatggctt cgaacaagac      1740
     gaacatacgc gcaaacgagc agagagggtc gaccccggac ggtgtcaccc aaacgcgcgc      1800
     caccaatgcc taagtatctg cagataaacc tgaactgctg caaagcagct caggccctgc      1860
     tgcaccaagt cgcagcagaa gaggaggtcg acttcgtcct gacaagcgaa tacaatagag      1920
     aagagggttc aaactggtat gccgacacaa cgggtaaggc agcgatagta aacaccaata      1980
     aaacgagact aaacaaggag ggactgggag aggcaggatt caggtgggtg gaagtacacg      2040
     gcctgaggct atacgcatgc tactggtctc caaactccac tatccaggag tacaaagact      2100
     ttgtaaacag gctagagagg tctataagaa gcgaggcaac cgagatcctc gtcacaggag      2160
     atttcaatgc gaaacatgcg gagtggggct gcccaaaaaa tgacaagaga ggagacatac      2220
     tgttggacat gatcaactct gcaggtctag tgatgtgcaa caaagggcag gagagcaccc      2280
     acgccaaagg atcgatcatc gacctgacca tagcaacacc ccgaacagcc cagagcatga      2340
     ccaagtggaa ggttctggac agggagtcac tgagcgacca ctactacatc ctgttcgaaa      2400
     ccaccccagg actcccaaaa aacgagctgc gcagaaacag gattgatgcc aaaaaactgg      2460
     aaacactact caaatcagac gacctctccc ggaccctaga catgtgcaca gatgcaaacc      2520
     agagcgccct ggcaatcacg gacgcgatca acggatgacg cctgacaggc catagtggaa      2580
     agagagccag gaaatcggta cactggtgga gccctgagat atacacgctc cgaaactcgg      2640
     caaaccacct ccgaagagtc taccaacgag agaggaaaaa gcacggccta gcgggcagca      2700
     cagtcgcgca atcgaatgca aaagcagcca aacgcgcact ggcgaacgca ataaagaggg      2760
     caaaggagac ggcgtggagg gacctgtgcg acaaggtaca gaacgacacg tggggactcc      2820
     catacaagct ggtgatggac aaactgacca gacaaccccc aatcccagaa ctagacacgc      2880
     caggcaggct gcgccgaatc gtcgatggac ttttcccaca acacccccta agggacagga      2940
     tcagctggcc cccaaacccg agcagccacc caagtaggag gatcgacgag gcggaactga      3000
     aggacgccgc gaggagcctc aaacaaaaga tcgccccggg cccagacggg atatcaaatg      3060
     agacggtcaa gaacatagtg acactgaacc cgcacgcact cctcaaagtc tataacacat      3120
     gcctagagca aggaacattc ccggaaacgt ggaaaaaagc cagactggtc ctgatacgaa      3180
     aaggcgacaa gcccctcgat gcaccgtcct cctacaggcc actctgtctt cttgactgcc      3240
     tcggcaagct tttcgagaag atactcgaca accgcctcag gaacttcctg gacgcaaacg      3300
     atggacttca tgacagacaa ttcggcttca ggaaagggcg gtcaaccatc gacgcactga      3360
     acacgctgaa ggacacgatt acgccgaacc gaaaaatagg catcctcacc ctagacataa      3420
     agaacgcttt caactccgcc ccctggaagg caatcatgga agctctatac gagaaggaag      3480
     tccccgggta catccagcaa atgatcaaca gctatctaga aaaccgcacc ctcagtttcg      3540
     gataaggcga cgaggaaacg agaattgatg tcacctgtgg agttccacaa gggtcagtca      3600
     tcgggccgac cctgtggaac attctctacg acggcctcct gcggacgcga ctaccagtgg      3660
     gagtcgagta cctggctttt gcggacgacg tcgcactggt cgccagagcc agagactcaa      3720
     tagacataga gcggctactc acctcatcag cagagaaggt ccacgaatgg ctgacgctag      3780
     tgggcctatc actggctgag caaaagtgcg aagccatgat cataaccaaa acaaggacgc      3840
     gcaacgagat taacatcatg gtaaatggac atcaagttcc ctccacgaac tgtattaaat      3900
     acctgggctt gcacatcaac caaaagtgga acttcactga gcatgccaag ataacagcag      3960
     ccaaggcagg aaatatcgtg agcaggctgt caaggataat gccaaacata agtgccgcga      4020
     agccaactaa gaggaagcta ctgagcaatg tcgcccactc cgtgatgctg tacggagcac      4080
     cagtatgggc gggagagatg agcgcggaag gctgggagga actgctcaat gtgcagaggc      4140
     gcatatgcct gagagtcgcc tcggcctact gtacgacatc aagatatgcg atatgcgtaa      4200
     tctcggggat cgccccattg aacctactcg ccaaagagag aaaagaaatc cacgataaga      4260
     agaggaacag ggaacatgga gcacagacag gaaacatcct caactcgtgg cagaccgaat      4320
     gggatagtag caaaaagggc aggtggactc acgtcctcat cccaaacatt ggtccctgga      4380
     taggccgtcg ccacggacaa ataaattacc acctgactca agtacttagc ggacatggat      4440
     gctttgccgc agacctaaag agattcggca aacttgattc ctcagagtgc tggtactgcg      4500
     gcaacccagc ggatgacgcc gaacacacgg tattcgcctg cgatgcgtgg cacactagac      4560
     ggaggcaggc agaaatggcg atggagacgg agttgacccc gaaaaacctc attcctacga      4620
     tgctggcttc caaggggaat tgggacatag tgtcggaatt gatcgtggga ataatgaagg      4680
     aaaaagaaac agaggagaga agacgacagg ccaccggaac cgtctgaagg agatgaggag      4740
     gtccccaccg acattcaact acagccggac acacaacaac gcaggaccaa gcacgaacgc      4800
     gactccaggg cggcggacta cggtcggccc gccaagagga cgtgaggaga aacagtgatg      4860
     gtcgaagtca cgacgaacat aaaaatgatt agtatgtaag gtggtaaacc gggggatttt      4920
     cctggtgagc catcatatga aatttgtaac aatactgtga gggttggcct cagggagatt      4980
     ggccctgtgc gatcccaaaa aattgtgtaa ttgtatttaa atcaataaac gatggcacat      5040
     gggggtgaaa tgaccacttg gttagtacca ccccatgtgt cgataccatg taaaaaaaaa      5100
     aaaaaa                                                                 5106
//
ID   SART-5_APi  repbase;    DNA;    INV; 4405 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-5_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4405
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 768-768 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   5'-truncated. It is followed by AGG(TTAGG)n of telomeric repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           481..3675
FT                 /product="SART-5_APi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPKFLQVNLNGNWAAEQLLPQTALDLDADVLLLSEPA
FT                 VHLGDEDRWEFSSDRKAAVGISRHSALTLDGRGSGAGFAWLAFQELTVFSC
FT                 YWRPGTTLQEYSAFLGNLEDAIRSRGDGQIILTGDFNAWNIEWGSRVSNPR
FT                 GHLLSDLAVSLGLILANRGEAPTFVRGAATSTIDVTFYRGVDCTGWQVLDI
FT                 ESLSDHRYVSFSASVPGRLPAEPGPPAAAPAGWAVRKLNASDLGEYFATTP
FT                 LENPGGEDGPPRALKSAEILDAYLTAACDACMPRKKAGPPGKTPVYWWSED
FT                 IAALRRSCLAARRPYQRALRRSDALVVRRARTAFAIARRELRTAIRAAKQK
FT                 CWSDLCAQVDTDPWGKPYKLVMGKLGSRPPGGDARGREAGIADFLFPAAPI
FT                 TDWSAAPSAAVNNIFEAFDPILNDLVFTRVVPEFTAEELRKAAKRLPAGKA
FT                 TGPSGIPNEVLKSLFNTRPRRVLGLLNNCLRALTFPPCWKKARLVLLRKGP
FT                 DKPADAPSSYRPICMLDTPGKLLERLLLQRLEDHLDANGGRRRAANQFGFR
FT                 KGISTETAVARVLELAASAAAPDRGQKDLCVLVTLDVRNAFNTLRWPVIDA
FT                 ALRAKNTPEYLVEMFRSWLSDRRLLTGAELTARPVTCGVPQGSVLGPALWN
FT                 VAYDDLLQMQVPPGVHLVGFADDLAIIGIAKSGPLLEEALNPTLAAIDEWM
FT                 QQRGLQLAHQKSEAVMLTNRRAFAPPVLVVGGHRIGLSKCIRYLGVILDQR
FT                 LTFAQHVDTVAKKAARSAAALARLMPNINGPCQWKRRLLASVVESQLLYAS
FT                 PVWAEKVVSVARTSARLIRPQRTAALRVLRAYRTVSDEAALLLADIVPADL
FT                 MGLERGRVRDRMNATFAAGEARPTKAAVKREERHETIELWQVRWESTDKAA
FT                 WTRRIIPDVRRWLERTVPRVPLTFHMTQALTNHGCFEQYLNRMARAANAGC
FT                 WHCPDRCDTSEHTIFACPRWAGLREELGAHLGHPPAADDLPDLLCGPDFHL
FT                 LPECAEERYNLLSRAAEAFRLFYKMTENIMTLKEEEERARQALRGRARAPV
FT                 QPVRPPRR"
XX
SQ   Sequence 4405 BP; 863 A; 1576 C; 1317 G; 649 T; 0 other;
     cctggactcg tgcgccaccg ccgccgaagt gctcgaggcc ctccgcggcg cgggccaccg        60
     gtcaggacga acagtcgctc gaggcggacc ggtcctccat atgtgacgtc aggatctggc       120
     ccaccaggtc caaccagcag atcgcctcgg cgaggatgcc ccgacacctg gccgcccaga       180
     tcaccaggat cccggtaggc tactcgatgt gcagggtcag gccgagaacg ctgccacccg       240
     agaggtgctt ccgctgccag gccttcgggc acgcctccag ggcatgcacc tcgggcgtcg       300
     accggaccgg cgcgtgctgg aggtgcggat ccacggccca cagcatgaag gactgtaccg       360
     aagcggacga ctgctgcctg gcgtgccaga tggcgggcct ccctaaagcc agccacagac       420
     ctgggtcggg cgcttgcgcc gctaggaagc tggccgccag gccggacacc accacacgcg       480
     atgcctaaat tcctccaagt caacttgaac gggaactggg ccgccgaaca actgctgcca       540
     cagaccgcac tggacctgga tgccgacgtc ctcctcctgt ccgagccggc cgtccacctc       600
     ggcgacgaag accgctggga attcagttcc gaccgcaagg ccgccgtcgg catctcccgg       660
     cactccgcac tcacgctcga cggacgcggc tcgggcgcgg gcttcgcgtg gcttgcgttc       720
     caagaactga cggtcttctc gtgctactgg cgcccgggca cgacgctgca ggaatactcc       780
     gcgttccttg gcaatctgga agacgcaatc aggtccaggg gcgacggcca aatcatactc       840
     accggcgact ttaatgcgtg gaatatagaa tggggctcca gggtcagcaa cccgagaggc       900
     cacctgctgt ccgacctcgc cgtcagcctg ggcctcatcc tggccaaccg cggcgaagcc       960
     cccacgtttg tccgcggagc cgctacgtcc accatcgacg tgaccttcta ccgcggcgtc      1020
     gactgcaccg gctggcaagt tctcgatata gaatcgctca gcgaccacag gtacgtctca      1080
     ttctccgcgt ccgtccccgg tcggctcccc gccgagccgg gcccgccagc cgccgcgccc      1140
     gcgggctggg ccgtccgcaa actgaacgcg tcggaccttg gcgagtactt cgccaccacg      1200
     ccgctggaaa accccggcgg agaggacggc ccccccagag ccctgaaatc cgccgagatc      1260
     ctcgacgctt acctcacagc cgcgtgcgac gcctgcatgc cgaggaagaa ggccggcccg      1320
     ccgggaaaga cgccggtgta ctggtggtcc gaagacatcg ccgctctgcg gaggagctgc      1380
     ctggccgccc gcagaccata tcagagggct ctccgccggt ccgacgcgct ggtcgttcgc      1440
     cgcgccagaa ccgccttcgc catcgccagg agggaactcc ggacggcaat ccgcgcggcc      1500
     aaacagaaat gctggtcaga cctctgcgcc caggtcgaca ccgacccctg gggcaaaccc      1560
     tacaaactcg tcatgggcaa gctgggatcc cggcccccgg gcggagacgc caggggcagg      1620
     gaggcgggaa tcgccgactt cttgttcccg gccgccccaa tcaccgactg gtccgccgcc      1680
     ccgtcggccg ccgtaaacaa catctttgaa gccttcgacc cgatcttgaa cgatctggtc      1740
     ttcacgcggg tcgtccccga gttcacggcc gaagagctga gaaaagccgc caagcgcctc      1800
     cccgccggca aggccaccgg accgtccggg atccccaacg aagttctcaa gtccctgttc      1860
     aacacccgcc cgcgccgcgt actcggcctg ttgaacaact gcctgcgcgc cctgacattc      1920
     ccgccgtgct ggaagaaagc gcgcctggtg ctgctgcgca aaggtccgga caagcccgca      1980
     gacgccccgt catcgtatcg tcccatctgt atgttggaca cgccgggcaa acttctggag      2040
     cgcctactgc tacagaggct ggaggaccac ctggacgcga acggaggccg caggagggcc      2100
     gccaaccagt tcggcttcag gaagggcatc agcaccgaga ccgccgtcgc cagggtcctg      2160
     gaactggccg ccagcgccgc cgcgcccgac cgaggacaaa aggacctctg cgtcctcgtg      2220
     acgctcgacg tcaggaacgc gttcaacacg ctcaggtggc cggtcatcga cgccgccctc      2280
     agagccaaga acacacccga atacctggtc gaaatgttcc gctcctggct gtccgacagg      2340
     cgcctgctga ccggcgccga gctgaccgcc agaccagtga cgtgcggcgt cccgcagggg      2400
     tccgtcctcg gcccggccct ctggaacgtc gcctacgacg acctgctcca gatgcaagtc      2460
     ccgcccggcg tccacctggt gggcttcgcc gacgacctgg caatcatagg catcgcgaag      2520
     tcgggccctc tcctggagga ggccctcaac cccaccctgg ccgccatcga cgagtggatg      2580
     cagcagagag gtttgcagct cgcccaccag aagagcgagg ccgtcatgct gaccaacaga      2640
     agggccttcg cgccgcccgt cctggtcgtc ggcgggcacc gcatcggcct tagcaaatgc      2700
     atcagatact tgggcgtcat cctcgaccag cgcctcacct tcgcacagca cgtcgacacg      2760
     gtggccaaga aggcagcccg ctccgcggcc gccctcgcca gactaatgcc aaacatcaac      2820
     ggtccgtgcc aatggaagcg ccgcctcctg gcctctgtcg tggagagcca gcttctatac      2880
     gcgtcccccg tctgggccga aaaagtcgtg tccgtggcca ggaccagcgc ccgcctgatc      2940
     cgcccccaga ggacggccgc cctgagggta ctccgggcct acagaaccgt ctccgacgaa      3000
     gcggccctgc tcctcgccga catagtcccc gcagacctga tgggcctcga gaggggtcgg      3060
     gtcagggatc ggatgaacgc caccttcgcc gccggagaag ctcggccgac caaagcggcc      3120
     gtcaaaagag aagaaagaca cgagaccata gagctgtggc aggtgcgctg ggagtccacg      3180
     gacaaggcgg cctggacgcg gcggatcatc cccgacgtga ggaggtggct ggagaggacg      3240
     gtgcccagag tcccgttgac gttccacatg acgcaggccc tgaccaacca cggatgcttc      3300
     gagcagtact tgaacaggat ggccagggcg gcgaacgccg ggtgctggca ctgtccggac      3360
     cgctgtgaca cctccgaaca caccattttt gcatgcccgc gctgggccgg cctccgcgag      3420
     gagctcggcg cccacctggg ccaccccccg gccgccgacg acctcccgga cctcctgtgc      3480
     ggaccagatt tccacctcct gccggagtgc gcggaagaaa ggtacaacct cctgtcccgg      3540
     gccgccgagg cctttagatt attctataaa atgacggaaa acatcatgac gctcaaggag      3600
     gaagaggaga gggcgaggca agcgcttcga ggaagggcgc gcgcccccgt ccagcctgtc      3660
     cgaccgccac gacgctgatc cacagcacac acgccagacg ccgcccggga cgagacgcag      3720
     cgctcgccgg atccagcggc tccaccgact tcgcacccgc cgacaagccc acttcgagag      3780
     gccaccgcgc ccgacccccc gggcccagcc cgtccgggcc agcggggcaa ctttcgtctt      3840
     ctccgcggca gtcagggggg gtctacgggg gggtgatttt ttcactcccg agacccccgg      3900
     accaaccccg gccgagatat cttcgaaaag gatcaaaaaa acgacgatcg ggtctccagc      3960
     gaaacccgag gtatccagtc tccgacggaa actccctctg cagcgcaagc ggccgccccc      4020
     aggaccggtc cccagctcca cgatcgacta cgaactgccc acggaccatg cagcgacgcc      4080
     tcaacgtcga ggaggagtcc accacgccga gccacgcgcc gcaagtcgcc cagccgccaa      4140
     gcggtgccag acgccatttc ttattgtatt cactattaaa tatctgtgcg tcccccggac      4200
     cgggtcccgc ctgcaggcac atactatacc agctctagct gaggaaagtc tgcagtcggt      4260
     cccggtcgta ggactacctt gtatgatatt gttgtaatta ccttgtgttt ttataccaat      4320
     aaacgatggg ggccggaggc gaagtaatgc taacgcggtt ccgcctccgg tcctcgattc      4380
     aaacagaaaa aaaaaaaaaa aaaaa                                            4405
//
ID   SART-6_APi  repbase;    DNA;    INV; 4451 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-6_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4451
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 770-770 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   5'-truncated. It follows (TTAGG)nTT of telomeric repeats. At
CC   least two copies (in ABLF02009709 and ABLF02005539) with >98%
CC   identity are inserted in telomeric repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1119
FT                 /product="SART-6_APi_1p"
FT                 /translation="VKELLDVVRALEGSKRSVIIAYNELKSELKKIAKKEE
FT                 ENKANGEASNVGGKDSPLADNLATEFSSLRSEVGELSKAVRQLVDRKPEGH
FT                 TGTTKRTQGRQQLAEDSEEALVTAAAWTEVVKKKTARKKNFQTQGEQSNDA
FT                 KGRENTTKANPRVRARPQAIIVDVNSADFPALATKIRGGVNREVIGDSITG
FT                 MRQAKSGALLIEVRGDTAQFEAVRAEISRSAGSEVEVRMLQQRVMVEVRDL
FT                 DQWSTAEEVAEAAASVTGVPSEQLKVFGLRKRYGGSQSVLVSLPVGPSREL
FT                 LNSGRLRVGMISCRVRLADQKQRCFRCFCSGHTAKECSGPDRTQCCRRCGE
FT                 SGHKVAACNALESAVSAFARSLAVEAPARK"
FT   CDS           join(1119..1751,1631..2176,1903..4227)
FT                 /product="SART-6_APi_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MSAAKGTGVIQVNLNNSWTAQQLLLQTMAERRSNIAV
FT                 LCEYNRPMGDSDHWVGSLDKKCAVFAANSSDVILDEQGVGVGFVWVWLGDV
FT                 LLYSCYCTPNCSVQEYDLFLGRLEYSISHQPRTPMNLIVAGDFNSHSPEWG
FT                 STRIDTRGSMLSDFAASLGLTICNVGSKPTFRRANCASIIDVTLNAFHPAA
FT                 ASSSLTGRYSRTSTRQVIICTAGKLCLNYRCHAERFPSGGRQLVTDWSVLE
FT                 DIYSASDHLYIEYLVSSRAAQKTMSHTTRARAPGWSVKKFNPAAAELFFEL
FT                 SGPPRLPSSEALSSVHAERLGALLSVTCDASMPPRSAFEARKAVPFAGLQL
FT                 QRGELTSVPAADRTGEPGRPNLTLIGKHVRNSKRRFARHKREAGRSYVDQS
FT                 TLFGARRATRSLTLRHVRCLHATQVGVRGKEGCPLRRTAIATRRAYQRAGR
FT                 RSDRGTREAELDAYRKARTELKTEIRKAQERSWSELCRSVDNDPWGVPYRL
FT                 VTKRLGRRSPAMDHTVRRSVARGLFPPEPVTDWESIPTSSGETALSVILPE
FT                 VPLGIPLFTSDEVARVVGRLPMGKAPGPDYIPNEIIKTTFKKFPEVFVDCY
FT                 NACLSEGYFPKPWKCAKLVLLHKGKGKPRNEPSSYRPISLLDGSGKVLERL
FT                 LLERLTHHIDSAGALSDLQFGFRRSRSTVDAIHQVLNVAKAAGSGPVQNRD
FT                 LCVLVTIDVKNAFNTAPWSLIDAALRRCATPNYLLNILRSFMENRELLIGD
FT                 NDRLPVTCGVPQGSVLGPTLWNLFYDGVLRLPVPDGNKLVAFADDVAVVAV
FT                 AHNADLIEQLVNPVLRMICEWMAENRLRLAPEKSECVVLTKKYVYRDPVLH
FT                 IDGCSVAVKRAVRYLCVNLDTRLSFGDHVESVTTGARKAASALGRLMPNVG
FT                 GPAQSKRSLLMSVVHSRLLYGADVWADEIQHVAKYRNLMLQSQRCAALRVA
FT                 RCYRTVSDMAALVLARMPPVTLQAVVRKRANALRHEGAVLTKQQKEDAMIG
FT                 QWQEMWDVSTKAAWTKALIPDLRRWWSQGPREVSYRMAQALTGHGCFQSYL
FT                 WRRRKAENPGCVHCPAVFDDAEHTLFACPFWDAARADVAAALRNPVGPEDV
FT                 PYLLCGPDQQELPEQPSQRGRLIEASKRHTELFQQMVETILSGKEELERQR
FT                 QHQMRIQNQ"
XX
SQ   Sequence 4451 BP; 1116 A; 1121 C; 1312 G; 902 T; 0 other;
     gtaaaggagc tgttggacgt agtgcgtgct ttagaaggaa gcaagaggag cgttatcata        60
     gcatacaacg aattaaaaag tgaacttaag aaaatcgcca aaaaggaaga ggaaaacaag       120
     gcgaacgggg aggcatccaa cgtcggcggc aaagattcac ccttggccga caacctggcc       180
     acggagttca gctcgctgag atccgaggtg ggtgagctca gcaaagcggt taggcaactt       240
     gtcgacagga agccggaggg gcatacaggc actacgaaac ggactcaggg acgacaacag       300
     ctggcggagg actcggagga ggcattggtc accgcggccg cgtggactga ggtagtgaag       360
     aagaagacgg cgagaaagaa aaacttccaa acgcaagggg agcaatcaaa tgatgcgaaa       420
     ggcagggaga acacgactaa ggccaacccg cgagttcgcg cgcgcccaca ggcaattatt       480
     gtggatgtca actcagctga ttttccggcg ctagccacga agattcgtgg cggcgtcaac       540
     cgcgaagtaa ttggtgatag cattactggc atgaggcagg cgaagtcagg cgccttactc       600
     atcgaagtcc gcggcgacac agcgcagttc gaggcggtgc gtgcagagat ctcccgctct       660
     gcgggctccg aggtggaagt gcgcatgctc cagcagagag tcatggtcga agtcagggac       720
     ctcgatcagt ggtcaactgc tgaagaggtg gctgaagccg cggcctccgt caccggcgtt       780
     ccatcggagc aactcaaagt cttcggtctt cggaaaagat acgggggctc ccagtcggtg       840
     ttggtatcgc taccggtcgg accgtcacgc gagctactca attctgggcg gctccgcgtt       900
     ggcatgatca gctgccgagt caggctcgct gaccagaagc aaagatgttt ccgctgtttt       960
     tgttccggcc acacagcgaa ggagtgttcc ggcccggaca gaacgcaatg ctgcagacgc      1020
     tgcggtgagt caggtcacaa ggtagctgcc tgcaacgcgt tggaatccgc agttagtgct      1080
     tttgccaggt ccctggcggt ggaagctcca gcccggaaat gagcgcggcc aaggggactg      1140
     gagtcattca agtcaacttg aacaacagtt ggacggccca gcagctactc ctgcagacga      1200
     tggcagaacg acggtcgaac atcgctgtct tgtgcgaata caacaggccg atgggtgact      1260
     ctgaccactg ggtaggaagc ctggacaaga aatgcgccgt atttgcagca aactcctcgg      1320
     acgtgatcct ggacgagcaa ggagtgggcg taggcttcgt ttgggtgtgg ctgggtgatg      1380
     tactgctgta cagctgctac tgcactccaa actgctcagt ccaagaatac gacctgttcc      1440
     tgggccgact ggaatattcg atctcgcatc agccgagaac accaatgaac ctgattgttg      1500
     ctggtgattt taattctcat tccccggaat ggggctcaac gaggatagac accagaggat      1560
     ctatgctgtc ggacttcgct gcgtcgctgg gtctaacaat atgcaacgtc ggttctaagc      1620
     ctacctttag gcgggcaaat tgtgcctcaa ttatcgatgt cacgctgaac gctttccatc      1680
     cggcggccgc cagctcgtca ctgactggtc ggtactcgag gacatctact cggcaagtga      1740
     tcatctgtac atagaatacc ttgtctcgtc acgagcagcg caaaaaacca tgagtcacac      1800
     cacgagagct agggcaccgg gctggtcagt taaaaaattc aatccggcag cagccgaatt      1860
     gttcttcgaa ctgtctggac cgccacgttt accatcatct gaagcactct cttcggtgca      1920
     cgcagagcga ctcggagcct tactctccgt cacgtgcgat gcctccatgc cacccaggtc      1980
     ggcgttcgag gcaaggaagg ctgtcccctt cgcaggactg caattgcaac gaggagagct      2040
     taccagcgtg ccggccgcag atcggacagg ggaacccggg aggccgaact tgacgcttat      2100
     aggaaagcac gtacggaact caaaacggag attcgcaagg cacaagagag aagctggtcg      2160
     gagctatgtc gatcagtaga taacgacccc tggggagtcc cctacaggct ggtcaccaag      2220
     aggctaggcc gccgatcacc ggcaatggac cacacagtca gaagaagcgt ggctcgtgga      2280
     ttatttcctc cggaaccagt gacagactgg gaaagcatac cgacatcaag cggagagaca      2340
     gccctatctg tcatactacc cgaggtgccg ctaggcatac cactgtttac cagtgacgaa      2400
     gtggcgaggg ttgtcggcag gttgccgatg ggcaaggcac caggacccga ctatataccg      2460
     aacgagatca tcaaaacaac ctttaagaag ttcccggaag tgtttgtaga ctgctataac      2520
     gcctgcctct cggaggggta ttttcccaag ccgtggaaat gcgccaagct ggtgttactg      2580
     cacaagggca aagggaaacc taggaacgaa ccgtcgagct atcgtccgat cagcctgctg      2640
     gacgggtccg gcaaggtctt agagaggctg ctcctggaga ggttgaccca tcacatcgac      2700
     agtgctggtg cgttgagtga tctccaattt ggcttcaggc ggtcgagatc caccgtagac      2760
     gccatccacc aagttctgaa tgtggccaaa gctgcgggca gcggcccggt ccaaaacaga      2820
     gacttgtgtg tcctggttac gatcgacgtt aaaaacgctt ttaatacagc tccgtggagt      2880
     ctaatcgacg cggcactacg ccgctgtgcg accccgaact acttgttgaa catcctaaga      2940
     tcatttatgg agaacaggga attgttaata ggggacaacg accgcctccc cgtcacctgt      3000
     ggcgttcctc agggctcggt gctgggccca acactgtgga atctgttcta cgatggagtg      3060
     ctcagacttc cagtacctga cggaaacaaa ctggtcgcat tcgcggacga tgtggcggtg      3120
     gtggcggtgg cccacaatgc ggatctaatc gaacagttgg tgaaccctgt tctcaggatg      3180
     atttgcgagt ggatggcaga gaatcgattg cggctcgccc cagaaaaatc agagtgcgtg      3240
     gttctaacaa agaagtatgt ttatcgggat ccagtactgc acatagacgg gtgctcggta      3300
     gccgtcaaaa gggcggtaag atatctatgc gtcaatttgg acacccgcct ctccttcggc      3360
     gatcacgtgg agtcagtgac gacgggcgcg aggaaagccg cctctgcgct cggcaggcta      3420
     atgccaaacg taggtggtcc agcccagtcc aagcgcagtc tgctgatgag tgtggtacac      3480
     agccgcctgc tgtacggtgc cgacgtgtgg gctgatgaga ttcagcacgt ggccaagtac      3540
     aggaacctga tgctccagag tcaaaggtgc gctgccctca gagtggcgag atgctataga      3600
     acagtttcag acatggctgc tcttgttttg gcaaggatgc cgccagtcac gctgcaggca      3660
     gtcgtccgca aacgcgccaa tgctctcagg cacgaaggtg cggtcttgac caagcagcag      3720
     aaagaggatg caatgattgg ccagtggcag gagatgtggg acgtctccac caaagccgcg      3780
     tggacgaagg cgctcatccc ggacttacga aggtggtgga gccaaggacc aagggaagtg      3840
     agttatcgca tggctcaagc cctaacgggc catggctgct ttcagagcta tctatggcgg      3900
     agaaggaaag ccgaaaatcc ggggtgcgtg cactgtccag ccgtgttcga tgatgctgaa      3960
     cacacgttat tcgcctgtcc attctgggat gcggcaagag cggacgttgc ggcggcgtta      4020
     aggaatccag tcggtccaga ggacgttccc tacctcctgt gcggtcccga ccaacaagag      4080
     ctcccggaac aaccatccca acggggaagg ttaattgagg cttcaaagag acacacggaa      4140
     ctctttcaac agatggtgga gaccattctc tccgggaaag aagaattgga gaggcagcgc      4200
     cagcaccaaa tgagaataca gaaccagtag ttgttaagtt tatttgttgt gggctgaaac      4260
     ggccaatcag ggtggttaga ggcccccatg ttttgttatt taattaatgt ttattaatgt      4320
     ttattattta attaatgttt atttgttgtg atgttattta ttgaaataaa tgatgtggtc      4380
     agggaggcag taatggggaa acctctttcc ctccctgact gcgataccat gaaaaaaaaa      4440
     aaaaaaaaaa a                                                           4451
//
ID   SART-7_APi  repbase;    DNA;    INV; 2317 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-7_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2317
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 771-771 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   5'-truncated. It is followed by AGG (TTAGG)n of telomeric
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..1665,1643..2137)
FT                 /product="SART-7_APi_2p"
FT                 /note="reverse transcriptase."
FT                 /translation="QFKLAKEEVFKSAKGLYSHEEKNEYFWLRRRTRNIQK
FT                 RKESPVSAMIQAAKDENWGRICELVDKDPWGHPYKIVMKKLSTRKPIPGLN
FT                 LPGRLDSIVGTLFPSRPVGTNEIVPVSQEELDAAYISPSEVASAAKSLPNG
FT                 KAPGPDGIPNEVLKVAVGLRPKYFSDLYNNCIRAAVYPERWKAAKLVLLRK
FT                 PGKPLDNPSAYRPLCMIDSAGKLFEKLLTARLREHLITSGNTTDNQYGFKR
FT                 GRSTIDAMSRVRRIFQDANGRGQAYNLFVGMLTLDVKNAFNSAPWAGILSS
FT                 LERKRTPSYLRNIIGQYLSNRKILVTGEGGEKVIAVTCGVPQGSVIGPDLW
FT                 NVLYDDLLRIELPTDVEIIAFADDVALVETASVPCLLEERLEEGLQTVIDW
FT                 MTANGLELAIEKTEAIMLTNRNKRNSMTVRCGPLRFESVKYVKYLGVLLDS
FT                 RLHFKEHGDYAAARAGDACRQLIQILPNLRGAGQKTRRVLATVVTSRLLYG
FT                 APFWYPSMTVKAISKMESAYRRVMLRVACCYSTVSHEAASVVTGMPPLKLL
FT                 AEERVSIYRRRGLVFTRVQTEKARVTTLTKWQAAWNAAGNGRWTHRLNSDL
FT                 GPWLSRAHGDVTFHLSQLLTGHGCFNENLARFGNATTTACSLCGTTPDTAE
FT                 HAVFQCDASRCRVTACVYLGVEELSADNVIGIMLRSKEDWCRVTNLVTKIL
FT                 TTREADERSRQQAAGQQQTN"
XX
SQ   Sequence 2317 BP; 642 A; 530 C; 664 G; 481 T; 0 other;
     caatttaaat tagcaaagga agaagtgttt aaaagcgcga agggcttata ctcgcatgag        60
     gaaaagaacg aatacttctg gctacgccgc cgaacgcgaa acattcaaaa gcgaaaggaa       120
     agccctgtct ctgccatgat ccaggcggcg aaagacgaga actggggacg gatctgcgaa       180
     ttggtggata aggatccatg gggccatccg tataaaattg ttatgaaaaa actaagcacc       240
     aggaaaccga ttccgggact taacttgcct ggccgtctag actcaattgt tggcaccctg       300
     ttccccagta gacctgtggg tacaaatgag atcgtaccag tcagccagga ggagctcgat       360
     gcggcgtaca tctctccgag cgaggttgcg tcggcggcaa agtcactacc aaacgggaaa       420
     gcgccaggcc cggacggtat accgaacgag gtgctaaagg tggcagtagg cttgcgcccc       480
     aaatactttt ctgacttgta caacaattgt attagagcag cagtttatcc cgaaagatgg       540
     aaagccgcga aactagttct cctccgcaag ccggggaaac cgctggataa cccatcggcg       600
     taccgcccgc tttgtatgat cgactcagca gggaaattgt ttgaaaagtt attaacggcg       660
     aggctccgag agcacctaat tacttccggc aacaccaccg ataaccaata tgggtttaag       720
     cgaggcaggt ctacgataga tgccatgagc agggtgagga ggatattcca ggacgctaac       780
     ggcagagggc aagcatacaa cctattcgta ggaatgctta ccctcgacgt taagaatgca       840
     ttcaacagcg caccctgggc aggtatcctt agttcgctgg aacggaagag gacaccgagt       900
     tacctgcgga atatcatcgg gcagtacctg tcgaacagga agatcctggt caccggggaa       960
     ggaggcgaaa aagttatagc ggtaacgtgc ggggtgccac aaggttctgt tatagggccc      1020
     gatttatgga atgtgctgta cgatgacctg ttgaggatcg agctaccgac ggatgtcgaa      1080
     atcatcgcgt tcgccgatga cgttgcgctg gtagaaaccg catcggtgcc atgcctgctc      1140
     gaggagagac tggaagaggg gctccagacc gtcattgatt ggatgacggc caatggacta      1200
     gaactggcga tcgaaaaaac cgaggcgatt atgctcacca accggaacaa aaggaacagc      1260
     atgacggtca gatgcggccc ccttagattt gagtcggtga agtatgttaa atacctcgga      1320
     gtactgcttg actccaggct tcatttcaag gagcacggcg attacgctgc agcgagggct      1380
     ggcgacgcct gtcggcagct aatacagata ttgccgaacc tcagaggagc ggggcaaaaa      1440
     acgagaaggg tactagcaac tgtggtaacg tctcgtctgc tgtacggtgc tcccttctgg      1500
     tatccttcaa tgacggtgaa agcaatatcc aagatggaat cagcatacag aagagtgatg      1560
     ttgcgggtcg catgctgcta cagcacggtg tcccacgagg cagcatcggt cgtcacagga      1620
     atgcccccct tgaagctact agcggaggag agggttagta tttactaggg tacagacaga      1680
     gaaggctaga gtgacaacgt tgaccaagtg gcaagccgcg tggaacgctg ccggcaacgg      1740
     gagatggacg caccggctga acagcgacct gggaccttgg ctgagcaggg cacacggtga      1800
     tgtcacattt cacctgagcc agctgctgac tggacacggg tgcttcaacg agaatcttgc      1860
     aagattcggg aacgccacga ctacagcgtg ttcactatgc ggcaccacgc cagatacagc      1920
     tgaacacgca gtattccaat gcgatgcgtc ccggtgcaga gtaacggcat gtgtgtacct      1980
     cggggtggag gagttgtcgg cagataatgt cattggaatc atgctacgat ccaaggagga      2040
     ctggtgcaga gtgacgaacc ttgtgacgaa gattttgact acgcgcgaag ctgatgagcg      2100
     gtccaggcaa caagcggcgg gccagcaaca gacaaattag ttaaggcttt ttataatgtg      2160
     cgctgaaagc gaattttgag aggatagagc ctcttatttt gtaattgtgt aacatatata      2220
     atttgtaaat tgtgttcatt ctattcaata aatgatgcga ttgggcggat ggagtatcta      2280
     cgatagttcc cgtccagttg cgattaaaaa aaaaaaa                               2317
//
ID   SART-8_APi  repbase;    DNA;    INV; 1304 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-8_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1304
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 772-772 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   3'-truncated. It follows  (TTAGG)nTT of telomeric repeats.
XX
SQ   Sequence 1304 BP; 403 A; 380 C; 336 G; 185 T; 0 other;
     aacacagccc cccccccgtg ggatccgcct tgacgtggtg ggggggcttg cgggctctta        60
     gctgagtctt accaagcgat cccggtctga actagaccca tcacagagcc tgaccttaac       120
     tggttgggca ggccttgtcc acctgcaaag gcctgcaaac ggacacaggt gaaggtaaca       180
     ccgaccaaaa atcccctggc agcaggtaaa atgcaaggga gaggcaccct caaaaaaaac       240
     taccaatgga cgtcgaagac agaaatttgg ttaccacacc aggggattcg gacccccagg       300
     tgtcggcagt cgggagtgag caagcgggct cccggcggtc gtcatccaac gactatagga       360
     ctcaaggggt ggtcagccag gccccttgta gctccaatgt tactagtact gacaaaaaca       420
     cttcaaaatt gcaaggcaag ctgctagaag cgagcaagca accaagccca cagacagcct       480
     tggcaagtct caagaacacg atcaaacaac agtacaaaat aatcaatgac atactagcag       540
     ccacagtcca cctgcacctt tgcaaggaaa aaagcaaatc tccagcaata ctggatgcca       600
     tcgacaaggt caccggggca accgagaacc tcaaaacgtc cactgtcagc ctgcacagcg       660
     cgttctacga ggcagagaag gcactaagca gagagacaaa cgcacagaaa gccggagcag       720
     acgcggtcga gccggtccta acggagaccc gagccgccat catcgaactc cgaggcatga       780
     tagaaaagca gggatccctt atagaaggac tgtcaaaact gatagagtag aaacaccaac       840
     agcaatccac ggcggccaag acactcagga cggacgctaa ccaaaagcaa ccccaggcca       900
     cagccagctc tgagccagac cccaaggact ctggcgtcaa cggatggacc gtggtaaata       960
     aaaaaaagcc acgcaagcct acaccgacaa gcttccccga cgaagagggc cgcagacagg      1020
     ccgcaatcaa acgtcccaga cgtcctccgc cagacgccat cgccatcaag cccggctcgg      1080
     aacacacatt ttcagacatc ctgaaagcag tgagaaagga agttgacgtc gacaagccca      1140
     catcacctct attgctgaga gcaaaggtgg cgaggtcctg ataagagtca ccagagacga      1200
     gaccaagagg agaggcctcg agacagccat cagggacgcg cttggagacc gagcaacggt      1260
     cagaggactg gtcagctacg tcgacctgga catcatgttt atac                       1304
//
ID   SART-9_APi  repbase;    DNA;    INV; 3682 BP.
XX
AC   .
XX
DT   07-FEB-2014 (Rel. 19.03, Created)
DT   07-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Acyrthosiphon pisum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART;
KW   SART-9_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3682
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 773-773 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   5'-truncated. Some copies are flanked with (TTAGG)n telomeric
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3105
FT                 /product="SART-9_APi_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FLQINLHRSSTAQSLLQQTAAATGAQVLLVSEQNWSP
FT                 ARDDRWAVSDDRSCAVALTATADFAPESSGSGRGFAWIQTRGLRMYSCYTS
FT                 RNDTEANFQSFLLDIQHSIRSADTQLAIVIGGDFNSWSQEWGSARNDERGD
FT                 RLSDLAASLDLLVANAGTTPTYCRANAESVIDVTFHRLTAPGAIRDWRVLE
FT                 DVYSASDHRYVAFTLDRSIEGEDIGGPVSRGWSYRQLNPDALAAYLASTAE
FT                 PIVRGETTATEAANSLIEYLEGACDSCMPPRTPHRTGRKEVHWWSTDLTTL
FT                 RNTTIKLRRAHHRSSRRRDPQGTVDAHREAYTTKRKELRNAIRDAQSKSWA
FT                 ELCRAVDDDPWGLPYKVVTKKIGRSRPGVEARGREAAIADHLFPDPPPTVW
FT                 AHEPLLTDDQQQGHEFTMVEILTACRRLPAGKATGPDGIPNEVLLHVARLR
FT                 PWVLQKTFNACLVRREFPARWKTARLVLLHKGSGKPIDEPSSFRPLCMLDS
FT                 AGKLLERLVLGRLNQHLDDSGQRSENQYGFRNGRSTVDAIERVLQAAHGAA
FT                 TGAVQHRDICVAVSLDVKNAFNTAPWRRIDAALRASQTPSYLNNIIRSYLD
FT                 GRKLLVGQSLLSRNVTCGVPQGSVLGPALWNAFYDRLLDTEMPSGVQLVAF
FT                 ADDLCVLGIARKGEAASTLLNPVLEKVSDWMTSNGLKLAPAKTEAVVLTRK
FT                 NVYDEPELFVEGHAIPIKPSMRYLGVELDTRLSFTKHVQQASLKASQSALA
FT                 IGRLMPNIGGPSQSKRALLGSVANSKMLYASPVWAARGTKTAKNRLAMARA
FT                 QRTVALRTIRAYCTVSAETSSILASMLPADLLATERARIRTRLDDQADETP
FT                 TNTLKNQERAISIAAWQARWDRSKNARWTRRLIPNVSRWLAKPPLNLTYRL
FT                 TQALSGHGCFKSSLYRFTRSEDSYCVYCVDPDDTAEHTLFVCPRWEDDRTR
FT                 LSEILRRPPTAADVEEILCGPSTDAMPDDPAARLRLMEQVKINRQELITMI
FT                 ESIMSTKEQDEREDQADDLARLNRLRALD"
XX
SQ   Sequence 3682 BP; 939 A; 1138 C; 991 G; 614 T; 0 other;
     tttctccaaa taaatctcca ccggagctca acagcgcaaa gcttgctaca acagaccgcc        60
     gccgcaactg gcgcccaagt cctcctcgtc tccgagcaaa actggagccc ggctcgagac       120
     gacaggtggg cagtcagcga cgatcgctca tgcgcggttg cactaacagc gacggcagac       180
     ttcgcacccg agtcttccgg gtcggggcgc gggttcgcct ggatccagac acgagggctt       240
     aggatgtaca gctgttacac ctcccgcaat gacaccgaag caaactttca atccttcctc       300
     ctggacatcc aacactccat ccgctcagcc gacacacagc tcgccatagt gataggaggc       360
     gacttcaact cctggtccca agagtggggg tcagctcgga acgacgaaag aggtgaccga       420
     ttgtcagatc tggcagccag tctggatctc ctcgtggcca acgcagggac cacacccacg       480
     tactgtaggg caaacgccga gtcagtcatc gacgtcactt tccaccgcct caccgcaccg       540
     ggggccattc gcgattggag ggtgctcgaa gacgtgtatt ccgccagcga ccaccgctac       600
     gtcgcgttca ccctagacag atcaatcgaa ggcgaagata tcggtggccc cgtctccaga       660
     ggctggtcct accgccaact aaaccccgac gccttggctg catacctcgc cagtactgca       720
     gaacccatcg tacgcggcga aaccactgca acagaagcag ccaactcact aatcgagtac       780
     ctagagggcg cctgcgactc ctgcatgccc ccaagaacgc cgcacagaac gggcagaaaa       840
     gaagttcact ggtggtcgac cgacttgacc accctccgca acacgaccat caaactgcgc       900
     agagcacatc atcggtcctc gcgcaggcgc gacccccaag gcacagtaga cgctcaccgc       960
     gaggcgtaca ccacgaaacg gaaggagctc cgcaacgcca tccgggacgc ccagtccaaa      1020
     agctgggcag agctttgtag agccgtagac gacgacccct ggggacttcc ctacaaggtg      1080
     gtcaccaaga agataggccg tagccgccca ggggtcgaag cacgcggcag ggaagcggcc      1140
     atagccgatc acctgtttcc ggatcccccg ccaacagtct gggcccacga gcccctccta      1200
     accgacgacc aacaacaagg ccatgaattc accatggtcg aaatcctcac ggcctgtaga      1260
     agactaccag cgggtaaggc tactgggccc gatggcatac ccaacgaggt cctacttcac      1320
     gtagcgcgac tccgtccttg ggttctacaa aaaacgttca acgcgtgcct ggttcgcagg      1380
     gagtttcctg cacgttggaa gacggccaga ctggtgctcc tccacaaagg atccggcaag      1440
     ccaattgacg aaccatcgag cttcaggccg ctatgtatgc tcgactcggc aggcaagctg      1500
     ctagagcgcc tggtgctcgg cagactcaac caacatctcg atgactcggg tcagcgatcg      1560
     gaaaaccagt acggcttccg caacggcagg tcgaccgttg acgcaatcga gcgagtgctc      1620
     caagccgccc acggcgcggc caccggcgct gtacagcatc gggacatatg cgtggccgtc      1680
     tcgctagatg tgaaaaacgc gtttaacacc gcgccttgga ggagaatcga cgccgcgtta      1740
     cgagcaagtc agaccccatc atatttgaac aacatcatac gatcgtactt ggacggtaga      1800
     aaactcctgg tcggccagtc gctgctcagc aggaacgtca cgtgcggtgt cccgcagggc      1860
     tcggtcctcg gaccagccct atggaacgcg ttctacgaca gactcctgga tacggagatg      1920
     ccgtcgggcg tccagctagt ggctttcgcc gacgacttgt gtgtcctagg catcgcccgc      1980
     aaaggagaag cagcatcaac cttgctgaat ccagtgttgg aaaaggtttc agactggatg      2040
     acaagcaacg gactcaagct agcacctgcg aaaaccgagg ccgttgtcct aacgagaaag      2100
     aacgtctacg acgagcctga gctgttcgta gaaggtcacg cgatcccaat caaaccgtcc      2160
     atgcggtacc tcggcgtgga gctcgacacg cggctgtcct tcacaaaaca cgtgcaacag      2220
     gcttccctca aggcttccca atcggcgctg gccataggca gactcatgcc caacatcggc      2280
     ggcccgtccc aaagtaagag agcgttactc gggtcagtgg caaatagcaa gatgctatac      2340
     gcctcccccg tctgggccgc ccgagggacg aaaaccgcca aaaatcgact ggcaatggca      2400
     agggcccaga ggacagtcgc actccgcacc atacgtgctt actgcaccgt ctctgcagaa      2460
     acctcgtcca tactcgcttc aatgctacca gcagatctgc tagcaaccga gagggccagg      2520
     atcagaacac gactggacga tcaggcggac gaaacgccca ccaacacgct gaagaatcag      2580
     gaaagagcaa tcagcattgc agcctggcaa gctcggtggg accggtcgaa aaacgcaagg      2640
     tggacgcgca ggctcatccc taacgtcagc cgttggctag ccaagcctcc gctgaatctc      2700
     acgtaccggc tgactcaggc gctttccggc cacggatgct tcaagagcag cctgtatagg      2760
     ttcacaagat cagaggacag ctactgcgtc tactgcgtgg accccgacga cactgccgaa      2820
     cacactctgt tcgtctgccc gaggtgggaa gacgatcgaa cacgcttgtc cgaaattctg      2880
     agacgacctc cgaccgcggc ggacgtcgaa gagatcctct gtggaccatc gacggacgca      2940
     atgccagatg atccagccgc aaggctccga ctgatggagc aagtcaaaat caacagacaa      3000
     gaactcatca caatgatcga atccatcatg tccaccaagg aacaggatga gagagaagat      3060
     caagccgacg acctggcacg actcaacagg ttgagagcac tcgactaggg ggccagctca      3120
     accccttcgg gaaactcgat gaagaacggt caacgatcac cccacatttc gcaatcgaaa      3180
     cgtcggaggt gtcaccgacc acgttcttca tccccccacc tgtgacacca cgggagggac      3240
     gacgatcacg gcatcgcggc tcaaccacct cggcaaggag gctgcaatat gacgcacaca      3300
     cactggactg gttacggata gcacgagatc gcaagggcgg cggactccgg tcggcctgcc      3360
     aatacggaca agtacgggat atctagggcg gcggactccg gtcggcctgc caacacggac      3420
     aagaacggga tcgcaagggc ggcggactcc ggtcggcccg ccaacatgaa gcaccggata      3480
     tgatttttct attttatgta tttatatgaa atgtaatgta tgaagggggc ggttagtcgg      3540
     ggaaatgtcc cgtcaacccc cccatgtatg tatgtataaa tttgattttt tcaaataaac      3600
     gatggcggcg tcgcggaagt aatgcgaaag caattcccgc ggcgccgtcg gttcaaacac      3660
     gaaaaaaaaa aaaaaaaaaa aa                                               3682
//
ID   SART1       repbase;    DNA;    INV; 6702 BP.
XX
AC   D85594;
XX
DT   30-JUN-2010 (Rel. 15.06, Created)
DT   30-JUN-2010 (Rel. 15.06, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SART1.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART1.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-6702
RA   Takahashi H., Okazaki S. and Fujiwara H.;
RT   "A new family of site-specific retrotransposons, SART1, is
RT   inserted into telomeric repeats of the silkworm, Bombyx mori.";
RL   Nucleic Acids Res 25(8), 1578-1584 (1997).
XX
DR   EMBL/GenBank/DDBJ; D85594; Positions       1    6702.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TTAGG)n in the opposite
CC   direction to TRAS1.
XX
FH   Key           Location/Qualifiers
FT   CDS           880..3015
FT                 /product="SART1_1p"
FT                 /translation="MSSYKEELPQEGTSRSAGGESLRAAERSAARCPSSSG
FT                 GGNNCSKRSVKDGGRVSAKDGENKERRGGSVKDNEAANVLSDDSMATASSS
FT                 RSSLTGSRRKRLKGSSTECSESSSGEETACSARRAASKTPSKRGRGRPPTT
FT                 GQYVGLAAAKEAYVKAQREELALREREVTESVRKLRVREDAVAGSTGEPAL
FT                 DPERRLDESAKLAVAIAAKSGNLKGTYVRALKEMAAAIREAKEDMAARTTD
FT                 GETKRLQELCRRQEAEILHLKNAIADMRSEMARLAQAVGSPAAVPAPVPAP
FT                 APIQRSDDEEERRLQRIMRAVGTMLDARLSGLEARLPPEPRMRPPLAADHR
FT                 RSRGQEKTPTPPTAAESMPTPGPTAAVATAAPNGGGPQKKKAPKSRQQPAQ
FT                 PEPRTFPPAPAALTEAWTTVARRGAKPRTATATGTVSAPPPLKEKKKRLRP
FT                 PRSQAVIVKLQPEAVERGVTYRAVLAEARAKIDTAELGIPIQRIRSAVTGA
FT                 KVLVVDGADQNEKADLLAEKLREVLPSDSIVVSRPTITAAVRLSGLDESIS
FT                 REELVAEVARIGECPPDIVKVGEIKMGPGGTGQVLVRCPIAGVKKILAVNK
FT                 LRIGWSVLRVQLLEARRLQCYRCHALGHVSARCPSSVDRSGECYRCGQTGH
FT                 KSAGCALTPHCTICAGAGRPAAHVSGGKACAKPPKQRQQRSSAAEEKRRSQ
FT                 PGTATATPMDDE"
FT   CDS           3018..6218
FT                 /product="SART1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MTSSPYHILQGNLNRSARAQDLLIQSMAERLTHLAVV
FT                 AEPYRVPSVPDWAGDIDGLVAVVQRRSAVGAPPEFDVVQRGRGFVAVFWAG
FT                 LLVVGVYFSPNRPLAEFESFLDELGQVVGRSRSRRALVLGDLNAKSSAWGS
FT                 PVTCPRGRETEEWLVGSGLVVLNRGAENTCVRRSGGSVVDVSFATPDVARR
FT                 VCGWEVLVDVETLSDHRYIGFRVAAAPESSSVTTLPFGGGVEGPRWALKRL
FT                 DTERLQEAAVVQAWRLDSLGEPADVREGAERLREAMSRVCDYAMPRVRAYA
FT                 PRRQVYWWNEGIAGLRRRCAGSRRKYQHLRRRRRRDEEEEDRAYEEYREDV
FT                 RALRVAIGEAKEAAWKELLETLDRDPWGRPYRLARSTMRSWAPPATSTLPP
FT                 DIVRHVIGGLFPDAPGTPFVPPVMITPTTGAQIGAEEEEVSPAEFGAAIEK
FT                 MKARRTAPGPDGLSNRAWALALQTEGGLGPVLRGLLSRCLREGRFPEEWKT
FT                 GRLVLIPKEGRPRDQPSGYRPIVVLSEAGKLLERVVAGRLVRHLENVGPNL
FT                 ADSQYGFRRGRSTLDAVQRVRDLSDQACSRGGVLLAVSIDISNAFNTVPWS
FT                 TILESLRFHRVPTGLRNLIEDYLAGRAVVFPERRGWGHKAVSCGVPQGSVL
FT                 GPLLWDVGFDWVLRGANLRGVQVICYADDTLVTARGDDYRSASILAAAAVA
FT                 TVVARIRKLGLEVALHKSEAVCFHPARKGPPPGASITIGGTAIAVRSQLKY
FT                 LGLVLDSRWSFDRHFDVLVPKLLGAAGALARLLPNIGGGGKSVRRLYLGVV
FT                 RSMALYGAPVWSPTLSARNAALLQRVQRVLAVRVVRGYRTISTEVACALAG
FT                 SLPWEYEAEVLAAVYRRRAQSLGRGSVPRLSVVARWRRAARRVATLKWKER
FT                 LAAEEIHRGSRTRRRTLAALVPVLEAWIDRRHGVLDFRLTQVLSGHGCFGR
FT                 YLWRVGREPHPGCHQCGHPDDDAQHALEACPRWEYPRQSLVAVLGADLSLP
FT                 VVVSRMVEDERCWRAMADYADLVMTLRETEERERECDPNSVALRRKRRGGR
FT                 RGRRAPAQLP"
XX
SQ   Sequence 6702 BP; 1208 A; 1977 C; 2318 G; 1199 T; 0 other;
     cccggcccgg gacctgggcg ggccccccgg cgcgcactca gcgtggccgg gggctccgtc        60
     tgtgggggag ttttgctgga cttccaccgg gcgcgtccgt aggtggcgga taacgggctt       120
     ctgggagcag tcacactccc aggggtatcg ctccttcttt ctcgtcgtgt cacggcgggg       180
     gagattgagc gacgcggacc aaaaccagca cggggggttc cgggctctcc acgcccttca       240
     ctggctgaag ggtgtttctt ctggggatgc ccgggcctcc tcgttcccat tttccccctt       300
     cgtttttatc ttccccttta tgttattttg ttttattttc tgtttgtttt gccttctttt       360
     gttttatttg tcttattggt tttacttttt cttttttcat ctttttgttt tggggccacg       420
     tccgaactat tttcggcgtg acccatcgga ggtggcgggc cgctcttggt ctgccttcgt       480
     cgttgagaaa gcgagccggc gttgtttgcg cttcttccgg ccgctggtcg ccatgtcccc       540
     ggctccacag ctacagggga acgccctcca gaggggggta ccggtatacc ggcgtggctt       600
     cgtggattgg tgctcactcg agcgtagggc gggggtctgt cgtgctgctc gttgcactcg       660
     atggactgcc ggccaacccg taatcctcac cgtgtggggg acgggggccg ctgccgcgag       720
     gtacggggct gcgaggacgt aaacctctat aaaaaatacc ccaatcttaa gctctggcgc       780
     ccggcgatgg gatgcatggc tggtgggaga ccagtcgcga gggcgtccca ggggaccgta       840
     cccctggcta ataaaaacag gaaataacat aatgaaaaaa tgtccagtta taaagaagaa       900
     ttaccccagg agggtacctc ccgctccgcg gggggagaat ccctccgtgc ggccgagcga       960
     tcggccgcac gctgcccctc gtcttctggg gggggcaata actgttcgaa gaggtccgtg      1020
     aaggacggtg gtagggtgtc cgcgaaggac ggagaaaata aagaacgtag aggagggtcc      1080
     gtgaaggaca acgaagcagc aaacgtcttg tcggacgata gcatggcgac ggccagctcg      1140
     agccgttcgt cgttgaccgg aagccgaaga aagaggctga agggctccag cacggagtgc      1200
     tcagagagca gctccggtga agagacggcg tgctcagccc gaagagccgc ctccaagacc      1260
     ccgtcaaaga ggggcagagg aagaccgccc acaaccgggc agtacgttgg cctcgccgcc      1320
     gccaaggagg cgtatgtgaa ggcccaacga gaggagctgg cgctgcgcga gagagaggtc      1380
     accgagagtg tccgaaagct gcgagtgagg gaagacgccg tcgcgggcag cacgggggaa      1440
     ccagcactcg accccgaacg tcgactagac gagtccgcga agctggccgt agcaatcgcg      1500
     gccaagtctg ggaacctgaa gggcacatac gtacgtgccc tgaaggagat ggctgccgcc      1560
     attcgggagg ccaaggaaga tatggcagca aggactaccg acggtgagac gaagaggctg      1620
     caggagctct gcaggaggca ggaggccgag atcctgcacc tcaagaatgc gatcgccgac      1680
     atgaggtcgg agatggcgcg cctggcccag gccgtgggat cgccggcagc cgtccccgcc      1740
     cccgtacccg cccccgcccc gatccaacgg agcgacgacg aggaggagcg gcgcctccag      1800
     cgcatcatgc gtgcggtcgg caccatgctg gatgcgcgcc tctctgggct ggaagcgcga      1860
     ctgcctccag agcccaggat gagaccaccc ctggccgcag accacaggag aagccgcggt      1920
     caagaaaaga cgccgacacc accaacggca gcagaatcaa tgccgacgcc cggaccaaca      1980
     gctgcagtcg cgacggcggc acccaacggt ggtggcccgc agaaaaagaa ggcgccgaaa      2040
     agcaggcagc agccggctca accagaacca cggacattcc cccccgcccc agctgctctg      2100
     acggaagcct ggacgacggt agcccgaaga ggcgccaagc cgaggacggc gacggcgacc      2160
     ggcaccgtgt ccgctccacc gcccctgaag gaaaagaaga agagactccg gccaccccgc      2220
     tcgcaggcag ttattgtcaa gctgcagccg gaggccgtcg agcgcggagt cacctatcgg      2280
     gcagtcctcg ccgaggccag ggctaaaatc gatacggcag agctggggat ccctatccag      2340
     cggatacgct cggcggtgac gggagcaaag gtattggtcg tagacggcgc cgaccagaac      2400
     gaaaaagctg atttgctggc ggagaaatta cgggaggttt tgccctcgga cagcattgtc      2460
     gtctcgaggc cgacaataac ggccgctgtc agactgagcg gcctcgacga atccatatcc      2520
     cgggaggagc ttgttgccga ggtcgccagg attggagagt gcccccccga tattgtgaag      2580
     gttggggaaa taaaaatggg ccccggaggc actggccagg tcttggtcag atgccccata      2640
     gcgggtgtca aaaaaatatt ggccgtcaac aagctgcgga tcgggtggag cgtccttcgc      2700
     gtgcaactcc tcgaggctag gcgcctgcag tgctaccgct gccacgcact gggccacgtg      2760
     agtgcccgtt gcccatcgtc ggtggaccgc agtggtgagt gctaccgctg cggccagacc      2820
     ggccacaagt ccgcgggctg cgcgctcacc ccgcattgta caatctgcgc cggcgccggt      2880
     aggcctgcag cgcacgtctc cgggggcaag gcttgcgcca agcccccgaa acaaaggcaa      2940
     cagaggagta gcgccgccga agagaaacgg cggagtcagc ccggtacggc tacggcgaca      3000
     ccaatggacg acgaataatg accagcagcc cttatcatat actacagggc aacctcaatc      3060
     gctccgccag agctcaggac ctgctgatcc agagcatggc ggagcggttg acccatctgg      3120
     cggtcgtcgc cgagccctac cgggtccctt cggttcccga ctgggcggga gatattgatg      3180
     gcctggtggc cgtggtccag cgtaggtcag cggtgggcgc tccgcccgaa ttcgacgtcg      3240
     tacagagggg tcggggcttc gtcgcggtct tctgggcggg cttgctcgtc gtcggggtgt      3300
     acttttcccc caaccggccg ctcgccgaat tcgagtcctt tctcgacgaa ctcggtcagg      3360
     tcgtggggag gtcgcgctca aggcgtgcgc tcgttctcgg ggacctcaac gcgaagtcgt      3420
     ccgcttgggg ttccccggtc acctgtccca ggggccggga gacggaggaa tggttggtcg      3480
     ggagcggtct cgttgtcctc aaccgcggcg ccgagaacac ttgcgtccgt cgttcgggtg      3540
     ggtccgtggt ggatgtgtcc tttgcgaccc ccgacgtcgc gcgccgcgtc tgcggttggg      3600
     aggtgttggt cgacgtggag acgctctccg accaccgcta cattggtttc cgtgtggccg      3660
     cggccccgga gtcttcttcg gtaacgactt tgccctttgg tggcggcgtg gagggcccgc      3720
     gctgggccct gaagcgcctc gacacggagc ggctgcagga ggcggccgtc gtccaggcct      3780
     ggcggttgga ctccctgggc gagccggcgg acgtgcgcga gggtgcggag cggctgcgcg      3840
     aggcgatgtc gcgagtctgc gactacgcca tgccccgcgt ccgagcgtac gcgccgaggc      3900
     gccaagtcta ctggtggaac gaggggatcg ccggcctgcg acgccgatgc gccggtagtc      3960
     gccgaaaata tcaacacctt cgtcgtcgga ggcgccggga cgaggaagaa gaggaccggg      4020
     cgtacgagga gtaccgggag gacgtgcggg ccctgcgcgt cgccattgga gaggcgaagg      4080
     aggcggcgtg gaaggagctt ttggagacgc tggaccgcga cccgtggggg cgaccgtatc      4140
     gcctcgcgcg gagcacaatg cgctcttggg ccccgcccgc gacgagcacc ctgccgcctg      4200
     acatcgttcg gcacgttatt gggggactgt ttccggacgc acctggaact cccttcgttc      4260
     cccccgtcat gataacaccg acaaccggag ctcagattgg tgcagaagag gaggaggtgt      4320
     cgccggcgga attcggtgcg gccatcgaaa aaatgaaggc gaggaggacg gcgccaggtc      4380
     ccgatggact gtcgaatcgg gcctgggcgc tggcattaca aaccgagggt ggtctgggac      4440
     ctgtcctccg agggctgctc agcaggtgcc tccgagaggg caggttcccg gaagaatgga      4500
     agacgggtcg gttggtcctc atccccaaag aggggcgccc cagagaccag ccatcgggat      4560
     atcgtccaat agtcgtgctg agcgaggccg gcaagcttct cgagcgcgtc gttgccggtc      4620
     gcctcgtgcg gcaccttgaa aatgtcgggc caaatctggc cgactctcag tacgggttcc      4680
     ggaggggtcg ctcgaccttg gacgcggtcc agcgcgtccg cgacctctcc gaccaggcgt      4740
     gctcccgggg aggcgtgttg ttggcggtgt ctatagacat atccaacgcc ttcaatacgg      4800
     tcccctggag cacgatcctg gagtcgttaa ggtttcaccg cgtccccacc ggtctccgga      4860
     acctgatcga ggattacctc gcagggcggg ctgtggtctt ccccgaacgg agggggtggg      4920
     gacacaaagc ggtctcgtgt ggtgtcccgc aggggtcggt tctgggtccg ctcctgtggg      4980
     acgtcgggtt cgactgggtc ctccgcgggg ctaacctgcg tggcgtgcag gtcatctgct      5040
     acgccgacga cacgctggtg acggcccgcg gagacgacta ccgttcggcg tcgattctgg      5100
     ctgcggctgc ggtggcaaca gtcgtagcca gaataaggaa gctcggcctg gaggtcgccc      5160
     tgcacaagtc cgaggccgtg tgttttcacc cggctcggaa ggggcctcct cccggcgcga      5220
     gtataaccat tggagggact gcgatcgctg tccggtccca acttaaatat ctggggctcg      5280
     tgctggacag caggtggagt tttgaccggc attttgatgt actggtcccg aaattgctcg      5340
     gggcggcggg tgccttagcc cgcttgctcc cgaacattgg aggaggagga aagtcggtcc      5400
     ggcgtcttta cctgggagtg gtgcggagca tggccctgta cggcgctccc gtctggtcgc      5460
     ccacgctctc cgctcgcaac gcggccctct tgcagagggt tcagagggtg ctggcggtga      5520
     gggtcgtgcg gggctaccgc accatttcga cggaggtcgc ttgcgccctc gccggttccc      5580
     ttccgtggga gtacgaggcc gaggtcctgg ccgcggtgta ccggcgcagg gcgcaatctt      5640
     tgggtcgggg aagtgtgccc cgtctgtctg tcgtcgcccg atggaggcgt gctgcgcgtc      5700
     gcgtggcaac gttgaagtgg aaagagaggc tggctgcaga ggagatccac cgtggttctc      5760
     gaacccggcg gcgcaccctc gcagccctgg tgcccgtgtt ggaggcctgg attgacaggc      5820
     gtcacggcgt gctcgatttc cggctcacgc aggtcctctc ggggcatggc tgcttcggga      5880
     ggtacttgtg gcgggtcggg agagagccgc atcccggatg ccaccaatgc gggcatccag      5940
     acgacgacgc gcagcacgcc ctcgaagcgt gcccgaggtg ggagtatccg cggcagtcac      6000
     tcgtcgcggt gctcggggca gacttaagtt tgccggtcgt agtgtcccgc atggtcgagg      6060
     acgagcgttg ctggagagcg atggccgact atgcggacct ggtcatgacg ctccgcgaaa      6120
     cggaggagcg agaaagagag tgcgacccaa actcagttgc actcaggcga aagagacggg      6180
     gtgggcggcg cgggcgaagg gcccccgctc agctcccgta gggaccgtcg ggcgtcgggc      6240
     gcgggggcgc ctgatgctcg acacgatagt ccagtggtgg tggtgagggt atagggcgct      6300
     gtggctccgg tgcctacctc acgaagaagt tgcggtcagc aatggccgac gttgatcccg      6360
     ccgttcgtca ggctgggagc cggtgtgggg ggcctgcggg gcgcgtttcc ctgtggtatc      6420
     gtaggttccc cctatgccgg aaagatagga gctcgttggg ttttagtcgg tagtcgttaa      6480
     gctgggcggg ttcggcgcga gctgaactca gcccagcgcg cctttttcaa ggcgtagtct      6540
     ccgtggacta attggtcgag ggcgcggacc tcggttcgcg acttcttcct gtttcttcca      6600
     ccggaggcgc ggagtccgac ataacccggt ccgacccccg tcggccgggt atccgtaaag      6660
     actgggattc cccatcgata ccaaaaaaaa aaaaaaaaaa aa                         6702
//
ID   SART1_R1_Hmel repbase;    DNA;    INV; 3577 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a R1/SART1 element from Heliconius melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART1_R1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3577
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           509..2806
FT                 /product="SART1_R1_Hmel_1p"
FT                 /translation="AYPSTGGXARMDRFSPTLVGTTWNFXKQKNQNDEVEC
FT                 VXPEKGGDVMLPEKGGVVVLKAEEXVGVVAASRRXSVSSVAAEGSXGDGQN
FT                 VGVXKEPRVVLTRLDXGDGMSTVGSVRSRRGSGSSYGRLWGASESKDSDTE
FT                 SFVSMVSERSRTRAQFLKDRRKRPRKPIDQSGSSGEGEPDRPAPKXVAXRR
FT                 XKGLGEAERKELLLRSEQEGSDGAAAVLARASSRLSDMTLPSEKEQDEAIL
FT                 ASDLKNQVVDSLAVIRKVASKSGNLKGTFTKALKQAARAIGMAVDELAQRT
FT                 ATEEVAQLRAHNNKLRNEMSELRXEVSLLRADLQTQRSQVVEPGKSQPGCS
FT                 XXELRRAIMMEVGTMVSARIEGLQNRLLPERSMRPPLAASKGSQKETATTS
FT                 ARTEATAPTTLVAPANPASTRGQKPGKNGKGKGKGKKTLAAPVTDAPQPRP
FT                 LPPAPADLSEGWNVVARKGNKKKAGAAQQQPNRRTGAKAPKTRKVPKLRQP
FT                 RSAVVALKLQPSAVESNVTYSQVLTQLKAKVDLGELDISDMRFRVASTGAR
FT                 LLEIPGLNSGDKADALAQKLRGVLDENEVQVSRPTKCAELRVTGLDDSVTS
FT                 EEVAAAVSRVGGCDVGAVKVGEVRRDRAGLGTAWVRCPVAAAKKVSGGRLL
FT                 VGFVSAKVTLLQQRVLRCFRCHEAGHVAAKCXGVDRSSHCFRCGRPGHKQA
FT                 TCSDAPHCPACEDAQRPAGHLAGSAXCAKICAQSKRSKGGRGKATSSQAQP
FT                 EAQSRATEEQPMLDX"
XX
SQ   Sequence 3577 BP; 781 A; 853 C; 1176 G; 661 T; 106 other;
     tggggtgctt ggtcggataa cctcctcgtg tgttcgctcg ctgttggccc tttctcgaat        60
     gcttgtcatt cgggggggac gaacagtgtt gcgggccggt gcaccctggg cggctagtaa       120
     ttggtgccca caggattcgt ccttgggtaa tgattgcthg ctggctaata atccgacgtg       180
     gttctccgcg tgtcctctgt catgcagagg hcacagtgtg aggaaccgga gggcgcgcgt       240
     ggtgtgtact caccctaccg ccacgcaggt gcagtgatgt gccagcgccg aatatatcgg       300
     aactccactc ttggttgcgg tcatgtctcg taatcaggag tggaaccgag ggccttgcct       360
     ttaccggccg ggctgcgagg aagaaaacct ctataaaaaa ttaccccaac ccaagcggcg       420
     aagcagcgcg aggggttcat ggctgatggg gagatcagtc gctactgctg gtcccgcyag       480
     ggtaccggcc gacaccctgg cgtaataggc ttatccgagt acagggggca mtgctcggat       540
     ggaccgtttt tcccccacac tcgtgggaac aacatggaat ttcdhraaac aaaaaaacca       600
     aaacgatgag gtggagtgtg ttgdgcccga gaagggcggc gatgtgatgt tgcctgagaa       660
     gggcggagta gttgtgctta aggcggagga agdtgtbggt gttgttgcgg cgtctcggag       720
     avtgtctgtt tcgagtgtcg ctgcggaggg gtcabttggh gatggccaga acgtaggagt       780
     gkggaargag ccragagtgg ttctgaccag attggacgyb ggtgacggaa tgtcgacygt       840
     bggtagtgtc aggtcgagac gaggdtccgg atcvtcatat ggacggytgt ggggagcgtc       900
     ggagtcvaag gactcagata cygaaagttt tgtgtcgatg gtgtcggaga ggtcaaggac       960
     acgggcacaa ttcttgaagg acaggcggaa gaggcctcgg aagccgatcg atcagtcggg      1020
     gtcttctggt gaaggagagc cagatagacc ggckccaaaa rtggttgcca wgagragasg      1080
     gaaaggtctc ggtgargcag aaaggaagga gttgctgctg aggtcagaac aggaggggtc      1140
     ggacggcgct gcggccgtvc tggccagggc tagctccagg ctctcggaca tgactctrcc      1200
     gtccgaaaaa gagcaggacg aggccatact tgcgtctgac ttgaaaaatc aggtggtgga      1260
     cagccttgcg gtgataagaa aggttgccag caaatcgggc aacctaaaag ggachttcac      1320
     caaggcccta aagcaggcgg caagggccat aggaatggcd gtagatgaat tggctcagcg      1380
     tacggcgacg gaggaagtag ctcagttgcg cgctcacaac aacaagctgc gcaatgaaat      1440
     gtcbgagctg cgnaahgagg tcagtctttt acgggctgac ctccaaacgc aaaggagcca      1500
     agtagtggag cctggcaaga gtcagccagg gtgttccgab rctgagttgc ggcgcgctat      1560
     aatgatggaa gtcggaacva tggtgagcgc ccggatagaa gghctacaga accggcttct      1620
     tccggagagg agcatgcgtc ccccgctagc ggcgtcaaag ggttcgcaga aagagaccgc      1680
     cacaacatcg gcgagaacag aggcgacagc gccaactact ctggtagctc ccgccaatcc      1740
     tgcctcgaca agaggccaga agccaggaaa gaatggcaag ggaaagggca agggtaaaaa      1800
     gacccttgca gctccagtga cggacgcccc gcagccacgt ccacttccac ctgcgccagc      1860
     tgacttgtca gaagggtgga atgtggttgc caggaaaggc aacaaaaaga aggccggtgc      1920
     tgctcagcag caacccaata ggaggacggg agcaaaagcg ccaaagacgc gnaaagttcc      1980
     aaaacttcgg cagcctcggt ctgctgtagt agcattaaag ctccaaccca gcgcggttga      2040
     gagcaacgtc acctacagcc aggtgctcac ccagctgaag gctaaagttg acctcgggga      2100
     gctggatatc tccgatatga gatttagagt agcctcaact ggcgcgaggc tactggaaat      2160
     cccggggctc aactcaggcg ataaggcvga cgctctggcg caaaagttgc ggggcgtgtt      2220
     ggacgagaat gaggttcaag tctcaaggcc tactaaatgc gcagagctga gggtgactgg      2280
     gctggacgac tcagtdacgt ccgaggaggt ggcggcagct gtcagcagag ttggtggttg      2340
     tgatgtcggc gccgtcaaag tcggtgaggt tcggcgtgat cgtgctggac ttggcacggc      2400
     ctgggtccgg tgtccagtgg cagctgccaa gaaggtgagc ggaggtcgcc tattggtggg      2460
     cttcgtgtca gcgaaagtga cgctattaca gcagcgggtt ctacgttgct tccggtgcca      2520
     cgaagcgggc catgtggcgg caaaatgcag bggngtagac aggagctcgc actgttttag      2580
     atgtgggcgt cctgggcaca aacaggctac gtgctcggat gcaccgcact gcccggcgtg      2640
     cgaggatgcg caaagacctg caggccactt agccggcagt gcarcrtgcg cvaagatctg      2700
     tgcdcaatcg aagcgcagca aaggcgggag agggaaggcg acgtcgagcc aagcccaacc      2760
     tgaagcccaa tctagggcca cggaggagca gcctatgctc gathaataat ggctgaacga      2820
     gttctgcagg cgaacatcaa ccactgtgcc agagcccaag acttattggt ccaaagcttg      2880
     gcgcagtggt cgatacatgt ggcggttgtt tcggagccct acagcgttcc cgacagagac      2940
     aactgggtag ccgacaacac cggggtggtg gctgtgatca cccaggtcgc cgcgggctcy      3000
     ccgcctttct cacgagtaga gaggggtgcg ggatgcgtcg chgcacttgt cggyraccth      3060
     gttgtygtag gggtctactt ttcccccaat cgractctkr cggagtttga agagttyctt      3120
     atacgattgg gggaaatggt agagcgattt cgkccggcgg argtrktggt sgcsggcgat      3180
     ytcracgcga agtccagcgt gtggggctcc gcaacgacgg aygtgcgtgg tgtgacgctg      3240
     tcsgakkggg tkrttgccac cggttkgtyy kkdsyymamc cgrrgggmcs amraacacgt      3300
     gtgtgcgaag gctgggcgga tccgtcgtgg acgtttcgtt cgcgagcccg gccctagcgt      3360
     gycgtgttcg gggctggcga gtgctggatg akgtggagac tctctcggat cacctytaca      3420
     tctywtacga gatctcyaca catycagcgg tgcaaccagc ccccwgtcca amctcgcgag      3480
     agtrcggacc gcgrtggcaa ytgggtcgtc tcgacaggca rttgttggag gaggccgcga      3540
     tagtggagtc ctggctgccc cagagcttgg cgtctgc                               3577
//
ID   SARTBm3     repbase;    DNA;    INV; 5585 BP.
XX
AC   .
XX
DT   10-SEP-2012 (Rel. 19.03, Created)
DT   10-SEP-2012 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon SARTBm3.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART; SARTBm3.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-5585
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 774-774 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TTAGG)n in the opposite
CC   direction to TRAS1, between TT and AGG.
XX
FH   Key           Location/Qualifiers
FT   CDS           271..2340
FT                 /product="SARTBm3_1p"
FT                 /translation="MEESMEARFKENLPQEGTRNGESLPEPSIGGEGSPSY
FT                 SGGGKILQTTQGREMEEEEQPVITGYSGDNDYSDQGSIGESFEVSSVTILE
FT                 KDWEQVEDPFKRRESIKRTPPGALKELKTPSKMADSGTLVQEHVFLTPKEK
FT                 IAEVAENTPMRPKKRKKLSSPIVIQPVEAEPPVEYLKLKTKIDKLVKFGKE
FT                 NKNVHRQIKDLLIDLPGLMERVTIRYKDDTNKPTEMEQKFEAYKKEQEEKI
FT                 RRLEQEIKELKTLHKRETGENQLFKLDDQMINSYDDFSKVSSMDWTQDSYK
FT                 RTKIGHGDIFLRTTDCTVYFCDEREKAHSRLTRRVLSRYPEVTKSEKMACA
FT                 GGAYVTVERETTIKTKEGRQTDKTSAVIMFHDATKQDGRSQKDMYELLSEL
FT                 TKIVEEMGNKELTIIKPQGIDTGVIRKMLEVLFRGKDIELELRTPKKGENT
FT                 NNTETRKRDEVIVIEGGTTTYADTVKRLKEGIKGTASLENIKGVKKTAKGQ
FT                 VLVRVMGNIEEMTGKIREMMRDRKVRRTGGSKKKVLHIKGMDSSVEMEEVR
FT                 EDLKSTNLIKKVDSLEIRSLRPMGGGNQTATVILDEEDAGRLLAGGKVRVG
FT                 LNICHIYERIELLRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCV
FT                 NEQFCPLCNKKGHTAGTSGCSLFREALETAKRRLTYKKNGF"
FT   CDS           2333..5290
FT                 /product="SARTBm3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEP
FT                 NRKLAKAAGWECDTRGDAALVLLNKTLTVSEIYRGKGFVGFKMKHFAAFSC
FT                 YISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKATNKRG
FT                 HYLLEMVADLDIVIMNEGVTPTFERGDRTSRPDITMASETLAGKISNWQVR
FT                 DEETMSGHKYIAYEIKHVLPLSQCHAQMKRWNLQRLDVDKFSKSLKGAQIS
FT                 TPMELVQATTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTR
FT                 NNKKLGKGKDRENNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDN
FT                 DIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFERKTKPSQEF
FT                 PEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRLVLQKVLE
FT                 SGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIE
FT                 KQLVQSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVA
FT                 LDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGGVV
FT                 VKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAQLIGFADDLALVVSAK
FT                 KEAELMAITNVALQKISAWMKQKRLHLAPGKTEAIVISGRRKLSEICFTLQ
FT                 GVRVVPTDKLKYLGLWFDKSLKFGKHIEETTGKAERLTAALGQIMPRKGGP
FT                 RSSKRRLLASAIQSVMLYGAPVWARVMNVAKYRNMYSKVQRQLAIRICGAY
FT                 RTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQ
FT                 KEGKGRWTRTIIPNLRLWMGRKHGETDRLLTQALSGHGVFNTYLHSIGKAE
FT                 SASCSYCEHVDTPEHALFQCIKFTELREKTEGSDGKVTVDNLMVRMIHSKE
FT                 EWDKYAGMLKEIMRVREKDERLRQESMYNNL"
XX
SQ   Sequence 5585 BP; 1943 A; 1073 C; 1541 G; 1028 T; 0 other;
     cccgtgagga gttgccagtc tcccatcggg cgcgtccccg ggtggcggat aggggaatgc        60
     ctctcagata tgagaggtac cggggaaatc aaatacccgg cgcggaccaa aactggcctg       120
     agtgtggtaa gtgcgcagtg cactcagtac tggacaggag ccgataagat cgacgaggaa       180
     tcgaaagggt cctgtaccag aaaatcggct ggcggactga gaggatactc tcacttaatc       240
     cggcaggcgt actgcaaact atgagacgtg atggaagaaa gtatggaagc aagatttaaa       300
     gagaatttac cccaggaggg taccagaaat ggagaatccc tccccgagcc gtctattggc       360
     ggtgagggca gcccttcgta ttctgggggg ggcaaaattt tgcagactac tcagggaaga       420
     gaaatggaag aggaagaaca gccagttatc accgggtact ccggtgataa cgactacagt       480
     gatcaaggaa gtataggaga gagctttgag gtttccagtg tgacgatact ggagaaagac       540
     tgggaacagg tggaagaccc gtttaaaaga agggagtcaa tcaaacggac gcccccaggg       600
     gcattaaaag aacttaagac acccagtaaa atggcggata gcggcacgct agtacaggaa       660
     catgtctttt taactcctaa agaaaagata gctgaagtag cggaaaatac accaatgagg       720
     ccaaaaaagc ggaaaaaact gtccagtccg atagtgatcc aacccgttga agcagagcca       780
     ccagtggagt acctgaaact aaaaactaaa atagataagt tggtaaagtt cgggaaagaa       840
     aataaaaatg tgcatcggca aattaaggac ttactgattg acctcccagg actgatggag       900
     cgggtaacta taagatacaa ggacgataca aataaaccaa ccgaaatgga gcaaaagttt       960
     gaagcctaca aaaaggagca agaagaaaag atcaggagac tagaacagga aattaaggaa      1020
     cttaagacac tgcataaacg agagactgga gagaaccaac ttttcaagct tgacgatcag      1080
     atgattaaca gctatgacga cttctcgaaa gtttcaagca tggactggac gcaggatagt      1140
     tacaaaagga caaagatagg ccatggagac atctttctga gaaccaccga ctgtacagtc      1200
     tacttctgtg atgagaggga gaaagcacac tcgaggctga caagaagggt gctaagccga      1260
     tatccagaag tgactaagag cgagaagatg gcatgcgcag gaggagcata cgtgacggtg      1320
     gaacgagaaa ccaccatcaa aacaaaagag gggagacaga cagacaaaac gagtgctgtg      1380
     atcatgttcc atgatgcgac caaacaggac ggccgaagtc aaaaggacat gtatgagctc      1440
     ctgtccgaat taaccaaaat agtggaagag atgggaaaca aagagctgac tattataaag      1500
     ccccaaggaa tcgatacagg tgtaataaga aagatgttag aagtactgtt ccgtggaaag      1560
     gacatcgaat tagaattaag gacacctaaa aaaggagaaa acacaaacaa tacggaaaca      1620
     agaaaacggg acgaggtaat agtcatagaa ggagggacaa ctacttatgc ggacaccgta      1680
     aagaggctaa aagaaggaat aaaagggacc gcatccctag aaaacataaa aggtgtaaaa      1740
     aagacagcca agggacaagt actggtaaga gtgatgggaa atattgagga gatgactgga      1800
     aaaataagag aaatgatgcg agatagaaag gtaagaagaa ctggggggag caagaaaaaa      1860
     gtattacaca taaaaggaat ggacagctcg gtggaaatgg aggaagtaag ggaggactta      1920
     aagtcgacaa acttgataaa aaaagtggac agcttggaga taagatcact gagaccgatg      1980
     ggcggtggaa accagacggc aacggtgatc ctggatgaag aggatgcagg aaggttgctt      2040
     gcgggtggta aggtaagagt agggctcaat atatgccaca tatatgaaag aatagaactg      2100
     ctgagatgtt accggtgctg gaaatatggc cacaaagcgg ataactgcga cggcgaggat      2160
     aggagtaggg catgtaggag gtgttcggaa gcgggccata tggccggaga ttgcgtaaat      2220
     gagcaattct gtcccctgtg taataaaaaa ggacacacag ctggcaccag tggatgctca      2280
     ctcttccggg aggcattgga aaccgcgaag cgaagactaa cctataaaaa aaatggtttt      2340
     taaagtgtta cagataaata tagaccgagg gaaagccgcg cacgacctac ttctggcaac      2400
     tgcgagcagt atgagcgcgg atctagtgat gctatctgaa cccaatagaa aattggcaaa      2460
     agctgctgga tgggagtgtg acaccagggg agatgcagcc ctagttcttc ttaataaaac      2520
     actgacggtt tctgaaattt atagggggaa gggattcgtt gggttcaaga tgaagcactt      2580
     tgccgcgttc agctgttaca tctctcccaa ctgcagtttt gaggagttca aagcagacgt      2640
     cgatgagctt tggacactac taaaaaaaca aaagacaccg atcctagtgg caggagattt      2700
     taactctgca tcgagagcgt ggggcagtaa agcaaccaac aaaaggggcc actacctgtt      2760
     ggaaatggtg gcggaccttg acattgtcat catgaatgaa ggcgtgaccc caacttttga      2820
     aagaggagac agaacatcta ggcccgacat caccatggcc tctgaaacgc tggcaggcaa      2880
     gattagtaat tggcaagtgc gcgacgagga gacaatgagc ggacataaat atatagccta      2940
     cgagataaag catgtattgc ctctatccca gtgccatgca cagatgaaaa ggtggaacct      3000
     ccaaaggctg gacgtagata agttcagtaa aagcctgaaa ggagcgcaga tctcgactcc      3060
     catggaactg gtgcaggcta cgacggcagc gtgtgatgct tctatgccaa agcaaaacaa      3120
     ccgcaagaaa aaaggagtct actggtggaa caaggaaatt gcggaagcaa ggaaggagtg      3180
     tttgaaatgc cgaaggaggt acacaaggaa taacaaaaag ctaggaaaag ggaaagacag      3240
     ggaaaataac gaagaaaatg aacacaaaaa gcagtataag gaagcgaaac tggagctaca      3300
     aagacgaata tggaaagcga aagacgataa atggagggaa gtgtgcgagg aagtcgacaa      3360
     tgatatatgg ggactgggat acaaaatagt gtcaaaaaag ctacgcggaa actcaccgat      3420
     aaatatgggc atggcacaaa ttcaaagcat agctgatggc ctcttcccgg aacacataga      3480
     tttcgaacgg aaaacgaaac cgtcacagga gttcccagag gtgaccgagg aggagatcat      3540
     ccaactaaaa gctcgcataa agctcaggaa agccccaggg cccgaccgga ttccgccgga      3600
     gatagtgact ctagcagtag cagtaattcc agacaggata aggcttgtgt tgcagaaggt      3660
     gctggagtct ggcgtcttcc ccaacagctg gaaaacagcc agactagtcc tgctaagaaa      3720
     accaggcaaa cccgctgaag atcctgcggg gcacaggccg ctatgtctac tggactgcta      3780
     cggaaagctg ctggagtcgc tgatcctagg cagaatagaa aaacaactag tacaatcgga      3840
     ctgtttacaa gattcgcagt acgggttcag aaaggggagg tccacagtgg atgcagccaa      3900
     caagctactt gagatagcgg aagacgcgag acgaggaacc caccgcacca gaagaatctg      3960
     cgcagtagtg gccctcgacg tccgtaatgc tttcaattct gcatcgtggg agctcatcct      4020
     ggaggaaatg gctgcaatag gtatgcctca atacatctat aatatcataa acagctacct      4080
     ccaggacaga tgcatcatac tgacagacgc tgagggaggg gttgtagtga aaaaggttac      4140
     cggtggtgtt ccgcaggggt cgatactggg ccccacgctg tggaacatac tgtatgatgg      4200
     ggtactgcgc ctcgaactgg gggatggggc acaattaata ggcttcgcgg acgatttagc      4260
     tctggtggtg tcagcaaaga aggaagcaga actaatggca ataacgaatg tagccctaca      4320
     aaagatcagc gcttggatga agcaaaagcg gctacacttg gccccaggaa agaccgaggc      4380
     aattgtgata agtgggcgaa gaaagcttag cgagatttgc tttaccctcc agggcgtcag      4440
     ggtggttcca accgacaaac tgaaatacct cgggttgtgg tttgacaaaa gtctgaagtt      4500
     cggtaaacac attgaggaaa caacgggtaa agccgaaaga ttgacggccg cccttggcca      4560
     aattatgccc agaaaaggag ggccgaggtc aagcaagcgc agactactgg catccgcgat      4620
     acaatctgtg atgttatatg gagcaccggt gtgggcaagg gtaatgaatg tagcgaagta      4680
     caggaacatg tatagcaaag tgcaacgaca gctggcaata cgcatctgtg gagcttaccg      4740
     taccatatcg ctagacgccg tcttggtgat agcgggcctg ataccgatag aacggctagc      4800
     aaaggaacgg caacgctact accacgaggg gacaagaacg agagaagagg aaagagcaca      4860
     tacaataaaa gaatgggaac gagactggca gaaggaggga aaaggaaggt ggactcgtac      4920
     aatcataccc aaccttaggc tctggatggg acggaaacat ggcgaaaccg acagactgct      4980
     gacacaggcc ctaagtgggc atggagtttt caacacttac ctgcattcaa tagggaaagc      5040
     agaaagcgca agttgttcat actgcgaaca tgttgacaca cctgaacatg ccctatttca      5100
     atgcataaag tttacagaac taagagagaa aacggaggga agtgacggaa aggtgactgt      5160
     ggataacctg atggtgagaa tgatccatag taaagaagaa tgggataaat atgcgggaat      5220
     gctcaaagag ataatgagag tgcgggaaaa ggacgaaaga ctaaggcaag aatctatgta      5280
     taataatcta taataatcta taagaattta aaaaataatc taataatcta ataatctata      5340
     ataataatat aaagacaata tatagacata caaacctata ataatataaa gataatataa      5400
     agacaaaagc ctctctgaag gaatgctcag gcggttctag agaggacagg agaacaaacg      5460
     gaagggggtt ttagtccgta ggatgctgag ccaccttctc agtagagtcg ggcatgccat      5520
     ctggcccggg ccttttggta tccatgagga tttcccccta ccgacgcata aaaaaaaaaa      5580
     aaaaa                                                                  5585
//
ID   SARTPx1     repbase;    DNA;    INV; 5981 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   11-SEP-2012 (Rel. 17.09, Last updated, Version 2)
XX
DE   Papilio xuthus R1 clade retrotransposon SARTPx1 - a consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like domain; R1 clade retrotransposon;
KW   R1_PX; SARTPx1.
XX
NM   R1_PX.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Papilio xuthus R1 clade retrotransposon - a consensus.";
RL   Direct Submission to Repbase Update (31-MAY-2004).
XX
RN   [3]
RP   1-5981
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (11-SEP-2012).
XX
DR   [3] (Consensus)
XX
CC   It is inserted between (TTAGG)n and AGG(TTAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           449..2542
FT                 /product="SARTPx1_1p"
FT                 /translation="MMASLKTNLPQEGTTSSAGGESLPEATLASGCPSYSG
FT                 GGKNCFDCTTTLALNMDTDARDVEVTGSGMEEEMELDTELMLSEESTSMSE
FT                 SSRRASPLPRKRRGRPPTTGHYVGLAKAKLALIEAEREEERRRAEAEVVAA
FT                 SRVARARSQAHRLSETATEDEEFQAAGSLGQVIEENIEVIKKMATTSKNLK
FT                 GGYVRALKDAAEEITKMTKALQRRTTSEETKGLQADNARLRAEVAQLRKEV
FT                 AEMKKHLLAPNERSEVAVEARRQPEPQPQRQPNDSEELVRTILCQVGNMIN
FT                 ARFEALQDRLLPEKRLRPQLAADNRPVSESRGAPEVLKAAGKAXGKTSGKV
FT                 PNKAPSKPPKEKTTAEPQAQPQPTAAVEPADHQPKELPWTQWSKKGLRKRR
FT                 RTDRGCTQTPKEEKASRAPSDGPPKTAAVVVSITPEAIAKGLTYDAVIAEA
FT                 KAKIKLQDVGITTGVRFRVCATGARRFEVLGTNNGPQADALAERLTQVFST
FT                 DLVRVSRPTKTTEVKISGLDDSSTIEEVLAAVAEIGGCPRESLKSSGVVRD
FT                 RFGVGHAWVECAVPTAKRVAAAGRLTISWVSANVTLLEPRPMRCYRCLQKG
FT                 HVRAQCNAEEDRSKLCFRCGVEGHKFKGCMAKPHCTICAAAQKPADHKLGG
FT                 RGCSAPAPKISRGKRTAQPQPAQQAPEEAAMETEEVNIRNGPTPTTSQC"
FT   CDS           2514..5672
FT                 /product="SARTPx1_2p"
FT                 /translation="MALHLLQANVNHCARAQDLLIQSMAEWATQIAVVSEP
FT                 YYVPNRDDWVGDEDSLVALIVPRSARPPSIDGVQKGRGYVGATIGGTLVVG
FT                 VYCAPSMNLVEFEDLLERVGTLVGRNLPHSVLVMGDFNAKSSAWGSTSTNA
FT                 RGAVLEEWALTSGLCLLNRGSRPTCVRTQGSSIVDLTFACPATARRVYGWE
FT                 VVEGVETLSDHRYIRFAISTTPTVPAHQGPESLQRDTPRWVVKRLNTDLLI
FT                 EAAQVETWSPADSSPDLANRAAELRASMTRVCDASMPRQGPPPRKRQVYWW
FT                 SADIAAMRVACVAARRQYQRQRRRRQRDEIAEASLHDIYKAAKHALSRAIC
FT                 EAKDRAREELIETLNLDPWGRPYRMVRGKLRTRASPLTQSLQPQLVRGVVG
FT                 SLFPNGVAHTPPFRIPTIRNENPDSVDEEDIPPITPGEFGAGIHRLRAKRT
FT                 APGPDGIPGRAWVLAADVYEERVVGLMSDCLAHGRFPLLWKNGNLVLLKKE
FT                 GRPADSPAAYRPIILLDEVAKLFERIIANRLIKHMTTVGPDLDEKQFGFRA
FT                 GRSTIHTIMRVKKITEEAIAQGNVVLAVSLDIANAFNTLPWSCIIEALRYH
FT                 QVPKYLRRIITDYLSARSVSYRSRDEWCRHEVTCGVPQGSVLGPLLWNVGY
FT                 DWVLRGANIQGVDVTCYADDTLVTARGSTYRDCAILATAGVAQVVGRIRAL
FT                 GLEVALQKSEALYFHGPRSRPPPGAHIVVGGVNINIESHIRYLGLMLDGRW
FT                 TFEGHFRQLGPKLMRTAAALGSLLPNVGGPKAACRRLFTGVVQSMALYGAP
FT                 VWSGALNSRTTEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAE
FT                 ILAAIHTWRELKITTDGAPPLRVEVEAFRKERREEAVSKWQRRLRQTRAGA
FT                 RTIGAICPVFMAWLRRRHGAVTFRLAQVLSGHGCFGSYLRRIGREPSAVCH
FT                 HCDDCPEDTAQHTLAECPAWTEQRRDLVAAVGDDLSLPATVRSMVESDGAW
FT                 RAVQTYCEAVMTIKEEAERAREATSQDAIRSRRTGGRRRAYARTIPP"
XX
SQ   Sequence 5981 BP; 1464 A; 1585 C; 1882 G; 1045 T; 5 other;
     ggtgcggtgg ccggtgacct cctcgtggtg caccctggaa actccccacc ttctgtgggg        60
     aggctaacaa ccggccgggg ggggaattcc gtnnnnctat accggatagg gccacccata       120
     ccgggcaggc ccgcggaacg atggggagcg cggcagggca ggtcaactcg gccaccctgt       180
     cgggcaatcg tcgaggatgt gtggcagcac aataacttgc agaggacttc ggtcggtgta       240
     tggcggcctt catggctcgc ggcgcggcag ggtcggtcaa cccggccacc ctgtcgggcg       300
     taaggtcgag ggcgtgcagc agcacgttaa actgctgagg acttcggtcg gcggacggtg       360
     accttcaagg ttgcgcatat tggtcgggga cctcaccctg cttcgaaaag gcggtttccg       420
     gtgtccgaca acaccggacc aacccagcat gatggcaagt ttaaagacga atttacccca       480
     ggagggtacc accagctccg ctggtggaga atccctcccc gaggccactt tggcctcggg       540
     ctgcccctcg tactctgggg ggggcaaaaa ctgctttgac tgcacgacga ctttggcctt       600
     gaatatggat actgatgcac gcgatgtgga agtgacgggg agtggaatgg aagaggagat       660
     ggagctggac acggagttga tgttgagcga ggaatcgaca tcaatgtccg agagcagtcg       720
     ccgagccagc cccctgccaa ggaagaggag aggacgaccg cccactacgg gccactatgt       780
     cggtctggcc aaagctaagt tggccctcat cgaggctgaa cgggaggagg aacgaaggag       840
     agcggaggcg gaagtagtcg ctgcctcgcg cgtggcccgg gctagatccc aagcccaccg       900
     gctgtcggag acggccactg aagatgagga gttccaggcg gccggttccc tcggtcaagt       960
     gatagaggag aacatagagg tcatcaagaa gatggccacc acgtctaaga acttgaaagg      1020
     gggatacgtg cgagccctaa aggacgcagc ggaggaaatc actaagatga caaaagctct      1080
     acaaagaaga actacatcgg aagagacaaa gggattacag gcggataatg ctcgcctgcg      1140
     agccgaggta gcacagctgc gcaaggaggt ggcagagatg aagaagcatc tccttgcacc      1200
     gaacgagagg tcagaggttg cagttgaggc caggcggcag cctgaaccac agccgcaaag      1260
     acaacctaac gacagcgagg agcttgtgcg caccatatta tgccaggtgg gcaatatgat      1320
     aaacgcaagg tttgaggcgc tgcaagaccg gctcctcccg gagaaacgac tccgtcccca      1380
     gctggcggcg gacaacaggc ctgtgtccga gagtcgcggt gcaccggagg tcctaaaagc      1440
     ggcgggtaaa gccaanggca aaacctcggg aaaagttccg aacaaagccc cgagcaaacc      1500
     ccccaaggag aagacgacgg cggagcccca ggcccaacca cagccaacgg cggcggtgga      1560
     accggcagac catcagccca aagagctgcc ctggacccag tggtcaaaaa agggcttaag      1620
     aaaaagaaga aggacagacc gcgggtgtac acaaacaccg aaagaggaga aagcgtcaag      1680
     agcaccatca gacggcccac cgaagactgc tgcggtggta gtctctatca caccggaggc      1740
     catcgcgaaa ggcctcacat atgacgcagt cattgctgag gccaaagcaa aaattaagct      1800
     acaggatgtg ggaataacaa caggggtacg ctttcgggtg tgtgccacag gagcgcggag      1860
     gttcgaagtc ttgggaacga acaatggccc gcaagcggac gcccttgcgg agagattgac      1920
     gcaagttttt agcacagact tggtccgcgt ctccagaccg acgaaaacga cggaggttaa      1980
     aatatccggg ttggacgact cctcaaccat cgaggaagta ctggcggcgg ttgcggaaat      2040
     aggaggctgt ccaagagaga gcctcaagag cagcggggtg gtgagggaca gattcggagt      2100
     aggacacgcc tgggtggagt gtgcagtgcc cactgcgaaa cgagtggctg cagcaggtcg      2160
     gctgaccata tcgtgggtgt cagccaatgt aacgctgctc gaacccagac cgatgcgctg      2220
     ctatcgatgc ctacaaaaag ggcacgtcag agcacaatgc aatgcagagg aagataggag      2280
     caaattgtgc ttccgctgtg gggtagaggg ccacaagttt aagggctgca tggccaagcc      2340
     gcactgcacc atctgtgcgg cggcccaaaa acctgcggat cacaaattgg gaggcagagg      2400
     atgttcggct ccagctccca aaatcagcag agggaagaga acagcacagc cacaaccagc      2460
     acaacaggca ccagaagaag ctgcaatgga gacggaagaa gtcaacatca gaaatggccc      2520
     tacacctact acaagccaat gttaaccatt gcgcacgggc tcaagacctg ctcatacaga      2580
     gtatggctga gtgggcgacg cagatagctg tggtgtcaga accctactac gttcccaata      2640
     gggatgactg ggttggggac gaggacagcc tcgtagcgct catcgtgccc cggtccgcga      2700
     gacccccatc tattgatggg gttcaaaagg gccgcgggta cgtgggtgct acaataggag      2760
     gaaccttagt cgtcggcgtg tactgcgccc ctagcatgaa cctcgtggag ttcgaggacc      2820
     tcctcgaacg tgtaggaact cttgttggca gaaatctccc ccattccgtg ctggtaatgg      2880
     gggatttcaa tgccaagagt tctgcatggg gtagcacttc caccaatgct cggggtgcag      2940
     tactcgagga gtgggctttg acttcgggac tctgtctcct gaatagggga tcgagaccca      3000
     cttgcgtccg gacgcagggc agttccatcg tggatttaac attcgcctgc cctgcgactg      3060
     cgaggcgggt gtacggctgg gaggtagtgg agggtgtgga gacactatct gaccaccgat      3120
     acatccgctt cgcaatatcg acgacaccaa cggtcccagc acaccaggga ccggagtcgc      3180
     ttcaacggga caccccacgg tgggtggtga agcgactcaa cacggattta ctcatagaag      3240
     ctgcccaggt tgagacatgg tcgcctgcgg acagctcacc ggatttagcc aatagggctg      3300
     ccgagttgcg tgcatcgatg actcgcgtct gcgatgcgtc gatgccgcga caaggccccc      3360
     ccccacggaa gagacaagtg tactggtggt ctgcagacat cgcagcaatg cgtgttgcat      3420
     gcgttgctgc cagacgccag taccaacgac aacgccggag aagacagaga gatgaaatcg      3480
     ctgaggcaag cttgcatgac atctataagg ccgctaaaca tgccctgagc cgagcgatat      3540
     gcgaagctaa agacagggca cgagaagaac ttattgagac cttaaacctg gatccgtggg      3600
     gtcgcccata tcgtatggtt cgagggaagc tccggacgcg ggcgtcgcct ctgacgcaga      3660
     gtctccagcc ccaactggtg cggggagtgg tggggtccct cttccccaac ggagtggcac      3720
     acacgccgcc tttcaggatt ccgaccatcc ggaatgaaaa tcctgactcc gttgatgagg      3780
     aggacattcc accaatcacc cctggcgagt tcggggctgg gattcaccgg cttcgtgcca      3840
     aaaggacggc tccggggcct gatggcatac cgggccgtgc ttgggtacta gccgcggatg      3900
     tatacgagga aagagttgtg gggctgatga gcgactgcct cgctcacgga cgcttccccc      3960
     tgctgtggaa gaacggcaac ctggtcctcc ttaaaaaaga gggcaggcca gccgactccc      4020
     ccgcagcata taggcccata attttacttg acgaggtggc aaagttgttt gagcggatta      4080
     tcgccaaccg cttaatcaaa cacatgacga cggtcggccc agacctagat gaaaagcaat      4140
     ttggttttag ggcgggcagg tcgaccatcc atacaataat gcgagtaaag aagataacgg      4200
     aggaagccat tgcccagggc aatgtcgtgc ttgcggtgtc cttagacatc gcaaacgctt      4260
     ttaacaccct gccctggagc tgtatcatcg aggccctccg ttatcaccaa gtgccgaaat      4320
     acctgcgccg tattattacc gactacctct cggctaggtc ggtttcatac agaagtcggg      4380
     acgagtggtg tcgacatgag gtcacctgtg gcgttccgca gggctcagtc ctcggcccac      4440
     ttctatggaa cgtgggctac gactgggtgc tgcggggcgc caacatccaa ggtgtcgacg      4500
     tcacgtgtta cgcggacgac actctagtga cggcacgtgg gagcacgtat cgagattgcg      4560
     cgattcttgc aacggctgga gtagcccaag tggtgggcag aatacgtgct ctgggtctcg      4620
     aggtggccct gcaaaaatcc gaggcccttt attttcatgg acctcggagc agaccacctc      4680
     cgggagctca tatcgtagtc ggcggtgtca acatcaacat agagtcacac ataagatact      4740
     tgggtctcat gctggatggc aggtggacct ttgagggcca cttccgacag ctgggaccca      4800
     agctgatgcg tacggccgct gcactcggca gtttactgcc caatgtaggc ggccccaaag      4860
     cggcctgtcg acggttgttc acgggcgtcg ttcaatcgat ggcgctgtac ggcgctcccg      4920
     tatggagcgg cgccctgaac agccggacga ctgaaatttt acatcggcca cagaggacca      4980
     tggccattag aatgatacgg ggataccgca cagtatctta tgacgcggct tgtaccctgg      5040
     cgggttccct gccatgggtg ctagaagcgg agatactggc ggctatccac acatggcgag      5100
     aacttaagat cacaacagac ggagctccgc ccttaagggt tgaggtcgaa gccttcagga      5160
     aggagagacg agaagaagcg gtgtccaagt ggcaacgccg cctccgccag acgcgggctg      5220
     gtgccaggac aatcggggca atctgtccgg tgttcatggc gtggctgagg aggagacacg      5280
     gggcggtaac cttccgtttg gcgcaggtgc tgtcggggca tggttgtttc ggcagttatc      5340
     tgcgccggat tgggagggag ccgtctgcag tgtgccacca ctgtgacgat tgccccgagg      5400
     acactgccca gcacacgctg gcggagtgcc cggcgtggac ggaacaacgg agggaccttg      5460
     tggcggcagt gggtgacgat ctttccctgc cggccacagt aagatcaatg gtcgaatcgg      5520
     atggagcatg gagggccgtc caaacttact gcgaggcggt gatgaccatc aaagaggaag      5580
     cggagagggc aagagaggcg accagccagg acgccattcg cagccgccgc accgggggga      5640
     gaagacgggc gtatgcccgg acgatcccac cgtgacagga ctcgagtggt gggcaggggg      5700
     aagcccacca ctcagaagag agttgaagag gacgcgttcg tttcccgcgc acacagatga      5760
     ggttaaaccg atgaggagcc aaaaaggcaa tcacgaccgg ggcgtgtgaa gaatacttct      5820
     tagtgtaccc acgcccccgg tggaaagtga atagagggaa acagtggtgg tttagtgggt      5880
     atgctcacat tcggtgagag aatcccacat aactaccgtg cctttccccg aggcacggag      5940
     tatgcataaa gcattcccca ctataaaaaa aaaaaaaaaa a                          5981
//
ID   SARTTc1     repbase;    DNA;    INV; 5819 BP.
XX
AC   AB593321;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc1.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc1.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593321; Positions       1    5819.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           265..2505
FT                 /product="SARTTc1_1p"
FT                 /translation="MMEDEKGNKFTAQGGSSPVPVAGGGKAGLSRPSASNR
FT                 GASSVGNQAEMLLATGEKEKDQAEGAGRASGSMVDTPKTGPLHSRLNLTSR
FT                 LQRCSSLSEGSTKKRKYVDSSPSPKTAYNKKESAVAFSAIEAIGNIVKIAE
FT                 KLNNTIKASYQPKKEIVHMVESINRNTKVFANESIKAWLEEVRWEPVERIT
FT                 YDADAQTDPPQEAEDTKTLRAELEAVKQQAAKQAKEIEILKRTLQDLERER
FT                 EQKQGVDATAQSTDDDKESIRREILTQMDRPGTYAEVERVLNLEWPQDVYQ
FT                 ATKVIKGSPLAASRDWDLGIFLNEEDGGLDTTAMGRLFKERYPELVEEEEE
FT                 QDGISYIVQTTKFKSKVNTKYVWKIRIEKSMTNWEDKALNAEILKKLRDIA
FT                 DAMQVEGRVKVAIPISPRASLDQLRKLAEIAFRNKGRELAIHVPQNFTVNG
FT                 IPTANPNPKQTKRRGVEKQTGALIVRKPGCEYIDLLKKVKKTLGNSENLKI
FT                 YKALKTNKGDLLIVTENNEEALANARKTIVEEDNAISVTISRPRGEGMELH
FT                 IGNIEADITAEQISEAVGKKMEVQPQEIVVKALRKGPAEMQVATIQVKKDL
FT                 GESLLTQRQIRIGLCLCTTTEKVELVRCYKCWGQGHISTKCSGPERKNLCR
FT                 KCGKPGHKISDCRGNEYCLQCNEEGHRTGSNKCPVRRKEVRKLIRSISTAK
FT                 NGHPPQTEEKHMSQMETEEVGKVPEARTDTAKPHIEGDLPSPLTREA"
FT   CDS           2509..5601
FT                 /product="SARTTc1_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="GCPDRAGAARSGTVPPDTPCVSTGLPSDSLRLRGGGG
FT                 RGRPTGRPDKIKVLQCNLNRSREAFQLLHGTVHDRQIDIAVVAEPNKKLSE
FT                 MGPWTLDRRKDVAIRQFNKAEALRKHIGNGFVGVEYRGYALYGCYISPNST
FT                 LDEFKQLLRELEGHLNSSGEECIIVGDFNAKSPAWGSKKEDERGRILMDWI
FT                 AQRDYTIQNTGDEPTFVRGESVSNIDFTITSTGLADKIKNWKVLPEENLSD
FT                 HRDIYFEICKTKEENEARTKRVRKSWKIDGEGLNIYRELVRKEISGRGRHW
FT                 STGTLMQKIEEMCNSSFATCRGGHPAHKRPVYWWNRDIAEQRAKCLKARRT
FT                 LGRGRKCRKTTSEQIQQLEDRYRMTKKELRGHIKKAKQTAWKELIEMIEED
FT                 PWGKGYKVAMGKFRKETPPSKEETKEAVKKLFPRRERTVWQKEPCQEKIEF
FT                 SEQELRDAASRLRVKRAPGPDGIQAEIVKLVVEEATSDVLAVINASAGKGE
FT                 FPTRWKEAKLVLIPKTKQDSEGIRKFRPICLLDIMGKLFEHLIRSRLEKEL
FT                 DEKGGLADSQFGFRKGRSTLDAMEEVLKFAETANRGTWGRKDLCAIVAIDV
FT                 ENAFNSAPWKKIIEALEGKRINKALLALIQDYLQDRGILVGEGEEYVEMTC
FT                 GVPQGSVLGPTLWNVLYDAVLRLEMPVGVRTLAFADDLAVLVSSRNEEEMM
FT                 ALVNQTLQKVAEWMEDTGLSVAAHKTEATLLTGRRRPREIKFSLMGEDISP
FT                 QTSIKYLGVRLDKELRFAPHVEEVAAKAERTMAALSRLMPNTGGAKPYRRR
FT                 MLVAVARSQILYGAEIWGSRHLKSKSLEKLERAQRTALLRVTSAYRTTSNE
FT                 ALQVIAGTKPMALAIEERVEIRRMGPGARKAVEDRTRRKWQAAWQNAQNGA
FT                 WTRKLIPDIGPWLDRKQGHTDFYLTQALTGHGCFGTYLHRIGKTADERCWF
FT                 CGEDRDDPEHTLFLCERFDGERLEYMKKTLTWPNAEEFVEVMLSSEENWAS
FT                 TSQLVRNIIRTKEREELRREGRLPT"
XX
SQ   Sequence 5819 BP; 1873 A; 1284 C; 1720 G; 942 T; 0 other;
     cccagggcgg aggccaaccg ctactgggcg cgtcccccag gtggcggata ggggaaagcc        60
     ctcaccggct tgccggcggg tagtggtgaa ataaaatagc caccgcggac caatagcgca       120
     gggaggagac aacctcctgg ataaaaaaca cggcagaccg caatggacaa ggaccaggtt       180
     aaggatggag gggattcgac aaaggacaag acgacaacac gcctgccagg aggcataaaa       240
     tgaaattcta cgagcttggt ttatatgatg gaggacgaaa aaggaaataa gtttactgca       300
     caggggggaa gttccccagt gccggtcgcc ggaggtggta aagcgggcct ctcccgaccg       360
     tcagcaagca accgtggggc atcttcggtg ggcaaccagg ccgagatgct tcttgctact       420
     ggagagaaag agaaagacca agcggagggg gctggaagag cttctggtag tatggtggat       480
     acaccgaaaa caggtcctct acacagcaga ttaaatctca ctagcagact acagaggtgt       540
     agttccctat cggagggcag tacaaaaaag aggaagtacg tcgactcatc gccaagtcca       600
     aagactgctt acaataaaaa ggaaagtgca gtagccttct cggcgattga ggcaatagga       660
     aatatcgtca aaatagcgga gaagctgaat aacaccatca aagcatcgta ccagcccaag       720
     aaagagatcg tacatatggt ggagagcatc aataggaaca ctaaagtttt cgcaaatgag       780
     tccataaagg cctggttgga ggaagtgaga tgggagcctg tagaaaggat cacctacgat       840
     gcggatgcgc agacggaccc gccacaggag gctgaggata ccaagactct cagggcggag       900
     ctggaggcgg ttaaacagca agcagctaag caggcaaagg aaattgagat cctcaaacgg       960
     acgctccaag atcttgaaag ggaaagggag cagaaacaag gggtagacgc caccgcccaa      1020
     agcaccgatg acgacaaaga atccatcagg agggaaatcc tgacacagat ggaccgtccc      1080
     ggcacatatg cggaggttga gagagtacta aacctagaat ggccgcaaga cgtctatcaa      1140
     gctacgaagg taatcaaggg atcaccgctt gccgcatcta gagactggga cctgggaatt      1200
     ttcctcaacg aagaggatgg gggtttagac accacagcta tggggaggct gttcaaagag      1260
     agatacccag aattggtcga ggaagaggaa gaacaagacg gcatctctta cattgtacag      1320
     acaacgaagt tcaagtcaaa ggtaaacaca aaatacgtat ggaagattcg gatcgagaag      1380
     tcgatgacaa attgggaaga taaagcatta aatgcagaaa tcttaaagaa actgagggac      1440
     attgctgatg caatgcaggt cgaaggtagg gtaaaagttg ccatcccaat ctctccgagg      1500
     gcatccctcg atcagctaag aaaactggcg gaaatcgctt ttaggaacaa gggaagagaa      1560
     ctggctatac atgttcccca aaatttcacc gtaaacggga tacccacggc aaatccaaat      1620
     ccaaaacaaa caaagagaag aggtgtggaa aaacaaactg gggcactcat agtacggaag      1680
     cctgggtgcg agtatattga ccttctcaag aaagtcaaaa agacattggg taactcggag      1740
     aatcttaaaa tatataaggc actcaagacc aataagggcg accttctgat cgttaccgag      1800
     aataacgagg aagcattggc aaacgccagg aagacaatag tggaagagga caacgccata      1860
     tcggtgacaa tcagcagacc taggggagag ggaatggagc tacatatcgg aaacatcgaa      1920
     gccgatatca cagcggaaca aatctcggaa gctgtcggaa agaaaatgga ggtacagccc      1980
     caagaaatag ttgttaaagc actaaggaag ggaccagcgg aaatgcaggt cgcgacgata      2040
     caggtcaaaa aggacctagg agaaagcctt ttaacccaaa ggcaaatcag aataggattg      2100
     tgtctatgca ccactaccga gaaggtcgag ctcgtaagat gctataagtg ctggggacag      2160
     ggacacatct ccacaaagtg tagcggaccg gaaagaaaga acctgtgcag gaaatgcggc      2220
     aagccggggc ataaaatctc agactgccgg ggcaatgaat attgcttaca atgcaacgag      2280
     gagggccaca ggacgggatc aaataaatgc cccgttcgca gaaaagaagt taggaaactt      2340
     atccgtagca tcagtacagc aaagaacgga catccacccc aaacggaaga aaaacacatg      2400
     tcacagatgg agaccgagga ggtaggtaaa gtgccagaag ccaggacgga tacagcgaaa      2460
     ccacacatag agggggacct tccctccccc ctcaccagag aagcatgagg gtgcccggac      2520
     cgggccgggg cagcccggtc cgggacagtc ccacccgaca ccccatgcgt ctcaaccgga      2580
     ctccccagcg actccctccg tcttaggggc ggaggaggac gaggaagacc aacaggacgc      2640
     ccagacaaaa taaaagtgtt gcagtgtaac ctaaaccgaa gcagggaagc cttccagcta      2700
     ctccacggaa cagttcacga tagacagata gacatcgcgg tggtggcgga accaaataag      2760
     aaactatccg aaatgggccc ttggacgctg gataggagga aagacgtggc aatcagacaa      2820
     ttcaacaagg cggaggcact taggaaacat attggaaatg gtttcgtggg agtggagtac      2880
     agggggtacg cattatatgg atgctacata tcgcccaact ccactctgga tgagttcaaa      2940
     cagctcctta gggaattaga aggccaccta aactccagcg gagaggagtg cataattgtt      3000
     ggcgatttca acgccaagtc gccggcttgg ggctccaaaa aagaggacga aaggggacgg      3060
     atccttatgg attggatagc ccaaagagac tacaccattc aaaacacggg ggacgagccc      3120
     acctttgtga gaggggagag cgtttccaat atagatttta caattacgtc gaccggcctc      3180
     gcggataaga ttaagaactg gaaggtactc ccagaggaga atctcagcga ccacagggac      3240
     atctacttcg aaatatgtaa aacgaaagag gaaaacgaag caagaacgaa gagggtaagg      3300
     aagagctgga aaatcgacgg agaaggactg aacatctatc gagaactcgt gaggaaggag      3360
     atcagtggta gaggcagaca ctggtcaaca gggacactga tgcaaaagat cgaggaaatg      3420
     tgcaactcct cctttgccac atgtaggggg gggcacccag cacacaaaag accagtgtac      3480
     tggtggaacc gagacattgc cgagcaaagg gcaaagtgcc ttaaagcaag aagaactctt      3540
     gggcgggggc gtaaatgcag gaaaactacg tcggaacaaa tacagcaatt agaagaccgg      3600
     tacagaatga ccaagaagga acttcgggga cacataaaga aggcgaagca aacggcgtgg      3660
     aaagagctga tagaaatgat agaggaagac ccctggggta agggctataa ggtagccatg      3720
     gggaagttca gaaaagagac gccgccctcc aaggaggaga cgaaggaagc tgtgaagaag      3780
     ctctttcctc gtagggaacg gacggtttgg caaaaggagc cctgccagga gaagatcgag      3840
     ttcagcgaac aagagctgag ggatgcagcg agcagactcc gggtaaagag agcaccaggt      3900
     ccagacggca tccaagccga gattgtaaaa ctggtggtgg aagaggcaac cagtgacgtt      3960
     cttgcggtga tcaatgcatc cgcgggaaaa ggagaattcc caactaggtg gaaagaagcc      4020
     aaacttgtat tgataccgaa aacgaagcaa gattcggaag gcattaggaa gtttaggcca      4080
     atatgtctcc tcgacattat gggaaagctc ttcgagcacc tcatcagatc caggctagag      4140
     aaagaacttg acgagaaggg ggggctggcg gactcccaat tcggatttag aaaaggaagg      4200
     tctaccttag acgccatgga ggaggtacta aagtttgctg aaacggccaa ccggggcacc      4260
     tggggccgga aggacctatg tgccatcgtc gccatagacg tcgaaaacgc ttttaattcg      4320
     gctccatgga agaaaatcat cgaggcacta gaaggaaaac gaatcaacaa agccctgtta      4380
     gcgctcatac aggactacct gcaggacagg ggaatcctgg tgggggaagg ggaggaatac      4440
     gtcgagatga cgtgcggcgt cccacagggc tcggtcttgg gcccgactct atggaacgtc      4500
     ctgtatgatg ctgtgcttag gctagagatg cccgtaggag tgaggacgct ggcgttcgca      4560
     gacgacctgg ccgtcctggt gtcctccaga aacgaagagg agatgatggc gctggtaaac      4620
     cagacgttac aaaaggtggc agagtggatg gaggacactg gactgagtgt ggcagcgcac      4680
     aaaacagagg caactttact cacgggcaga aggaggccgc gtgagattaa gttctccctg      4740
     atgggcgaag atatatctcc gcaaacctcc ataaagtacc tgggggtcag gctcgataag      4800
     gagttaagat ttgcaccaca cgtagaggag gttgccgcca aggcggaaag gacaatggca      4860
     gccctgtcca ggctgatgcc aaacacaggg ggggcgaagc catacaggag gaggatgctg      4920
     gtggcggtgg cgcggagcca gatcctgtac ggcgctgaaa tctgggggtc aaggcacctt      4980
     aaaagcaaaa gcctggaaaa actggagagg gcacagagga cggcactact gcgggtgacc      5040
     agcgcctacc gtaccacctc gaacgaggcg ctacaggtaa tcgccggaac gaaacccatg      5100
     gccctggcga tcgaggagag ggtagagatc agaaggatgg gtcccggggc gcggaaagcc      5160
     gttgaggaca ggacccgccg gaaatggcaa gcggcctggc agaacgccca gaacggggcg      5220
     tggaccagaa agttgatccc agatatcggt ccctggctgg acagaaaaca aggccatacc      5280
     gacttctacc tgacccaagc cttgacgggt catggatgtt ttggaaccta cctgcacagg      5340
     ataggcaaaa ctgcggacga gaggtgctgg ttctgtggtg aggacaggga tgacccggag      5400
     cacaccctct tcttgtgcga gaggttcgac ggagaaaggc tcgaatacat gaagaagact      5460
     ctcacgtggc ccaatgctga ggaattcgtg gaagtgatgc tatcatcgga agagaactgg      5520
     gcgagcacct cacaactcgt cagaaatatt ataagaacga aggaaaggga agagctaagg      5580
     agggaaggaa ggctgccaac ttagcggaaa agaaagcagc atttgttcga agtaatgcga      5640
     aagcgattcc gaacatctgc ggaggaacag gaggagaggt ttttagtggg taggccgaca      5700
     cgtccaccta gtcggagagc cccacactac cccggtctca caatagaaac cggggtgtac      5760
     gtaacgtatt ttcctctcct ccggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa       5819
//
ID   SARTTc2     repbase;    DNA;    INV; 5463 BP.
XX
AC   AB593322;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc2.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc2.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593322; Positions       1    5463.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           231..2315
FT                 /product="SARTTc2_1p"
FT                 /translation="MSDESRKKLTVQGRDTLVPVGEGVVGQALPDGQPTTV
FT                 QTPSVRSQAEASPKATDFKRGSRQTLYEKISRSHSLGSADKKRKYTDMSPG
FT                 YERSIEPYKKVESPEAFVLTEALDMVIKLGLDLERRIENNTKREIKDLSAR
FT                 LKRQVEILSRTSVRAWVESHRYIEPEKIQIDVDIQTEALGEGHADELARKE
FT                 ETHNEEILSLRSEVERLRQENEELRRMNRQPQEKTPHDQTTPQVYEGLKEN
FT                 VTAENFEKLIDLKWTNQAYAKTTFVRNDAVKCEDQVVVVEAASGEDVAERL
FT                 TTRFPEIAPATATSVPTPGTALCVTKSRTIELENGERVEDIIGRSILLNIG
FT                 KDHQNRRKNLMNGMRKVATLASNKGIKKFRLYSLIDEPNSQKFETRKITEW
FT                 ALYDTEMMAEVYVPRARNRKSTAGASEPEPESEEWEEQKTKRRRTTKTITV
FT                 SKAETDEQTYASMLKRLKGEINVEEIGVTVKGVYETSDGRIKINLTEKGKG
FT                 NCEKFRTAIEEKLGNKAEAKITMARKELIITGIDKETTEEEVRLAIQQHYT
FT                 EKTACPEDTQVRSFHSNERTNKQTATVLVPETEALHLLQKRKVIIGWTMCR
FT                 IVEKLRPERCHRCLKYGHRAKECKEKAGENNTEKGGRCLKCGRWGHHAKAC
FT                 QNEPHCYECEQQGHRADSMACPKYRILVEKMRRSTGANNTSTKRRE"
FT   CDS           2345..5236
FT                 /product="SARTTc2_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MAHAMLAKLTHELEASVVTVSEPNLTLAEKEAWLVDD
FT                 TGSAAIKITDRSLNITDSGNGSSFAWARTGDMTYISCYISPNISAAAFETR
FT                 LQELEAFLRTHHGNKLLIGDFNAANRAWGSSTNDRRGQLVIEMTEALGMTL
FT                 LNTGHSPTFLGSGGTSIVDLAFIDDSAAGRVRNWTVLEAETMSDHRAIAID
FT                 IEDHRARPATGDHRYGGKAHALRWTKDRDKQLREQLAEILPRINTVDPISV
FT                 SRAIGEAAQRSLKKIANNRKPIFWWTDEVGNARQRCNAARRRAGRARDDRK
FT                 TELWRIYKDERKALKKEIKKAKAEAWQRLIEDIEHDPWGKGYRIAIGRAAP
FT                 RQQVSERERWRAARELFPQCAIPMYDMQEACEPTMFSYEEIQAAAARMRMG
FT                 KAAGPDGLGPEIVQAAVAASPETISGLVNDLLKSQKFPEQWKRARLALIPK
FT                 AKKSPDKLPKYRPICVLDSLGKFYEQLILARLLGELEAKGGLSDSQYGFVR
FT                 GRSTIDAMQDVLRVVEWCSTGSYGRRELCALILLDVANAFNSVRWPDIIQA
FT                 LIDKGISAYLVNLVRSYLTDRFIIVQHGDGFNATCGVPQGSVLGPLLWNFV
FT                 YDEVLHLDVPVGVRLFAFADDLAMVAMGMPADELQNNANLAFDTVNRWMCS
FT                 KHLTLVAEKTEAVIMTGRRDHADTRFIVGDSVVKPSESARYLGVYMDRKGT
FT                 FAQHIAEAAAGTTKLTGKLSRILPNLRGASEGRRRTIAAAVTCKMMYGSEI
FT                 WSKGLDKLSNAEKVNRAQRPIMLRVACAYRTVATTSLQVLCSMVPWDMLAL
FT                 ERRATFKRAENRKAEREKTIRQWKDRWDKESRHSWTKRLIPEIEPWQTRRH
FT                 GLLDFYITQMMTGHGCFSSYLSRIEREATEDCWYCDCTRDDAEHTFFDCPR
FT                 WTEERSEAEHILGAFPEPETLVGEMLKDERTWKAVTAMARRIMESKEEEER
FT                 SRKGAGARR"
XX
SQ   Sequence 5463 BP; 1659 A; 1316 C; 1603 G; 885 T; 0 other;
     cccgtgtgaa gttggctgtc ttccatcggg cgcctcccca gggtggcgga taggggaaag        60
     cctcccagat atgggtggta ccggggaaat caaatacccg gggcggacca aaaccagtca       120
     agatcacacc gtaactccag acgtggtctg gaaacggggg ccgcgcggtt tcggggctgc       180
     gaggtttaga gagcctctat aaaattctct ctaatcaaaa taagacaatc atgagcgacg       240
     aatcaaggaa gaaacttacg gtgcaaggga gggataccct agtacccgtc ggtgagggag       300
     tggttggaca ggctctccct gacggtcagc caacgactgt tcagacacct tcggtgagga       360
     gtcaggccga ggcgtcaccg aaagctactg acttcaaacg aggaagcagg caaacactgt       420
     acgagaaaat atcaagaagc cactcgctag gaagtgccga taagaaacgg aagtacacgg       480
     atatgtctcc aggctacgaa aggagcatag aaccctacaa aaaggttgag agtccagagg       540
     cctttgtgct aacagaagca ctggacatgg taattaaact aggtttggat ctcgaaagga       600
     gaattgaaaa caacacgaaa agggaaatca aggacctatc ggcaagactc aaaaggcagg       660
     tggagattct tagtcgaact tctgtgaggg cgtgggtcga atcacacaga tacattgagc       720
     ccgaaaaaat acaaattgat gtcgacatac agaccgaggc gctaggtgaa gggcacgctg       780
     atgaactagc ccggaaagaa gaaacacaca acgaagaaat tctctcactg cggtccgaag       840
     tagagagact gagacaagag aacgaagagc tgagaagaat gaacagacaa ccacaggaga       900
     aaacaccgca cgaccagacc accccacaag tatatgaggg tcttaaggaa aacgtaactg       960
     ccgagaactt cgaaaaactg atcgacctga aatggacgaa tcaagcatac gcaaagacga      1020
     cctttgtacg caacgacgca gtgaaatgcg aagaccaggt ggtcgtcgtc gaagcggcaa      1080
     gcggagagga tgtcgcagaa aggctcacga ctaggtttcc ggaaatcgca ccagcgacgg      1140
     cgacgagtgt tcctacaccg ggaaccgcgc tatgtgtgac gaaatccagg accatcgaac      1200
     tcgagaatgg cgaaagggta gaagacataa tcgggcgctc tatactactt aacataggca      1260
     aggatcatca gaatcgaagg aagaacctaa tgaacggaat gcgcaaagta gccaccctgg      1320
     caagtaacaa ggggatcaaa aagtttcggc tatattcgtt gatcgatgaa ccgaatagcc      1380
     aaaagtttga aacgagaaag attactgaat gggccctata cgacacggag atgatggctg      1440
     aagtatatgt cccgcgagca aggaatagaa aatccacagc gggagcgagt gaacccgaac      1500
     cagagagtga agaatgggaa gagcaaaaga ctaaacgacg cagaaccacc aaaaccataa      1560
     ccgtaagcaa agctgagacc gacgaacaaa cctacgccag catgctgaaa cggctcaagg      1620
     gcgagatcaa cgtggaagag atcggtgtca cggtcaaggg tgtctacgag acgagcgacg      1680
     gtagaatcaa gatcaacctg accgaaaaag ggaagggaaa ctgcgagaaa tttaggacgg      1740
     ccattgaaga gaaactcgga aacaaggctg aagcaaagat aaccatggcg aggaaagaac      1800
     tgataataac gggcatcgac aaagagacca cagaagagga ggtacgccta gcgatacaac      1860
     aacactacac cgaaaaaacg gcatgcccag aagatacgca ggtgcgttcg ttccattcta      1920
     acgagcgaac gaacaaacag acggcgacgg tgctagtgcc ggagaccgag gcattgcatc      1980
     tcctacaaaa gaggaaggtc ataatcgggt ggactatgtg cagaatagta gagaagctga      2040
     gaccagagag atgccatagg tgtctcaagt acggccaccg cgctaaagaa tgtaaagaga      2100
     aagccggcga aaacaacacc gagaagggag gcagatgctt aaagtgcggg cgctgggggc      2160
     accacgcaaa agcctgtcaa aacgaacccc actgttacga atgcgaacag caagggcata      2220
     gggccgattc catggcctgc ccgaagtatc gaatacttgt ggaaaagatg aggaggagta      2280
     caggtgcgaa taacacctct acaaaaagac gagagtgata caacttaata ctaaccggag      2340
     caggatggcc cacgctatgc tggccaaact gacacacgaa ttggaggcgt cggtcgttac      2400
     ggtaagcgaa cctaacttaa cccttgccga aaaggaagca tggctcgttg acgacacagg      2460
     gagcgcagct ataaaaataa ctgatcggag tttaaacatc accgacagtg gaaatgggtc      2520
     gagttttgcc tgggccagga ctggcgacat gacctacatc agctgctaca tctcgccgaa      2580
     catctcggca gcggcgtttg agacaagact ccaagagctg gaagcattcc tcaggaccca      2640
     tcacggcaac aaactgctca ttggcgactt caacgcagcg aaccgagcgt ggggatcgtc      2700
     gacgaatgac aggagggggc aactcgtcat cgagatgacg gaggcgttgg gaatgaccct      2760
     ccttaacacc ggacactccc caacatttct cggttcgggg ggaacgtcca tagtcgactt      2820
     ggcgttcatc gacgatagtg cggcaggtag ggtgaggaac tggaccgttc tcgaagcgga      2880
     aaccatgagc gaccaccgag cgatcgccat cgacatcgaa gaccacaggg ccagacccgc      2940
     gacgggcgac catagatacg gaggaaaggc gcacgcgctc agatggacta aagaccgaga      3000
     taagcagctc cgggaacaac tggcggaaat tctacccaga attaatacgg tcgacccgat      3060
     ctcagtgagc cgggccattg gcgaggctgc ccagcgctcc ctcaagaaaa tcgctaataa      3120
     caggaaaccc atcttctggt ggacggacga agttgggaac gcgaggcaaa gatgtaacgc      3180
     cgcacgacga cgtgcgggaa gggcgaggga cgaccgcaaa accgagctat ggcggatcta      3240
     caaggacgag aggaaagcac tgaagaagga aataaagaaa gctaaggcag aggcctggca      3300
     aaggcttata gaggacatcg aacacgaccc atggggtaag ggctatagaa tagcaattgg      3360
     gagggcggcc cctcgacaac aagtcagcga gcgagaaagg tggagggcgg cgcgtgaact      3420
     gtttcctcag tgcgccattc ccatgtacga catgcaagag gcctgcgaac cgacaatgtt      3480
     ctcctacgaa gagatacagg ccgcggcggc gagaatgcgc atgggcaagg cggccggacc      3540
     tgacggcctg ggccccgaga tagtgcaagc tgctgtagcg gcgtctcccg agaccatttc      3600
     tggactcgtc aacgacttat taaaaagtca aaagttcccg gaacagtgga agagggccag      3660
     attggcactc atacccaagg caaagaagtc gcccgacaaa ctacccaaat atcgccctat      3720
     atgcgtgctg gatagcctgg ggaagttcta tgaacaacta atacttgcca gactgctcgg      3780
     cgagctcgaa gccaagggcg ggctctccga ctcccagtac ggcttcgtga gaggcaggtc      3840
     gaccattgac gcgatgcagg atgtactcag ggtggtcgag tggtgctcca ccggctcgta      3900
     cggcagaagg gagctgtgtg ccctaatatt gctcgacgtc gccaacgcat tcaatagcgt      3960
     caggtggccc gacattattc aggcattgat tgacaaaggg ataagtgcgt acctcgtcaa      4020
     cctggtgcgc tcgtatctca ccgaccgatt catcatcgtg cagcacggcg acggtttcaa      4080
     cgcgacatgt ggagtgcccc aggggtcggt actgggcccg ctcctctgga acttcgttta      4140
     cgacgaggtg ctacatctcg acgttcccgt tggcgtgcgc cttttcgcct tcgccgacga      4200
     cctggcgatg gtcgccatgg ggatgccggc tgacgagtta caaaataatg cgaaccttgc      4260
     cttcgacacc gtgaaccgat ggatgtgcag caaacactta acgctagtgg cggagaagac      4320
     cgaggccgtt ataatgacgg gcaggagaga ccacgctgat acccggttca ttgtcggcga      4380
     cagcgtggta aaacccagcg agagcgccag atacttgggg gtatacatgg ataggaaagg      4440
     aacgtttgcc caacacatag cggaagccgc tgcggggacc accaagttga cgggcaagct      4500
     atcaaggatt ctcccgaatc tccggggagc ctcggagggg agacggagga cgattgcagc      4560
     tgcggtcacc tgcaaaatga tgtatgggtc tgaaatatgg tccaaagggc tggacaaatt      4620
     aagcaacgcc gagaaagtaa acagggctca gagaccaata atgttaaggg ttgcgtgtgc      4680
     ctaccgcact gtggcgacca cctctctcca agtactgtgc tccatggtgc cgtgggacat      4740
     gctggcactg gagaggaggg cgaccttcaa gagagccgaa aacaggaaag cggaaaggga      4800
     aaaaaccatt cgacagtgga aggacaggtg ggacaaggag agccggcaca gctggaccaa      4860
     gaggcttatt cccgagatcg agccctggca gacgaggagg catggcctgc tagactttta      4920
     catcacacag atgatgaccg gccacggctg cttttcctcc tacctgtcta ggatagagag      4980
     ggaggcaacc gaagattgct ggtactgcga ctgcacgaga gacgacgctg aacatacatt      5040
     tttcgattgc ccaaggtgga cggaggagag gagcgaagcc gaacacatat tgggggcatt      5100
     ccccgaaccg gaaacactcg taggggaaat gctaaaggat gagaggacat ggaaagcggt      5160
     cacagctatg gcacgaagaa taatggaaag caaagaagag gaagagagaa gcagaaaggg      5220
     cgcaggcgct agacgctgag gcccccccca gcagatggca tagacaacag cgaacagccg      5280
     acccgaagta atgtcttgaa ggatagtccc gggtcggtcg gctgccacat tgctgatgag      5340
     gaaaaggggt ttagtgggtg agagccccac actctccggg ccgctaagaa cgtaccacca      5400
     aaggcccggg ggtcggctgt tagagcttcc cctcaacctc ggtaaaaaaa aaaaaaaaaa      5460
     aaa                                                                    5463
//
ID   SARTTc3     repbase;    DNA;    INV; 5982 BP.
XX
AC   AB593323;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc3.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc3.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593323; Positions       1    5982.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           578..2707
FT                 /product="SARTTc3_1p"
FT                 /translation="MKKVNLKQEKEAGKLAGEGTLRKDLSKTDALKVAAGK
FT                 QTAKLDEAENPKTPGEDSSLGNINPFGRSSMTPRSPQRKVQTSLIVGQTPK
FT                 LDETIEVYKETPTGAIPKRKRVSTPEEAHKVKKLVETRIKKQKSLVLGNIT
FT                 CTDILQAFTQVTSRLAKKVKVLQDRIDDTPNTRREIKNDAKAVCYAMADMQ
FT                 AMQDDVFEEIFKWQRHIQMEDSDDDVVLVESPENKGVGIQVATQTKEVVTK
FT                 NAETQTPLEMWGKSTQVTEMSQPGQLREPLYIGDKRSFVDFKDLSKRDWKE
FT                 SYFEKVKIKAVNPLAMMPEAAPTIIRSRDKKEEGALLKMLHQRCPEYRESV
FT                 LEGENPIESKVTPIVRSVVVGHVAGPKETLKNYMFVVAGDEKNKASGYLKE
FT                 TYEALEELKEVLKELQIEKVAIGSDLTGREEHLRKMLEYIFRGENVEVTLC
FT                 VPIAKKMIWRDQGKAQSAISVSPKGMRKTDAVIVQGSKTETYEAVLKEVRE
FT                 SLAETDCEIRTVRKTREGKLLLLVGKEGDQAKKVKEALSSKMANRKIVLRD
FT                 DSTKEDKVLHVKGLDALAVETEIVSSVVAAMDGTITNTDLEVTSLRKAYGG
FT                 SKVATIKVSAKSADAILSKGKIKIGLVTCKITERVNSVFCYRCWEPGHMAA
FT                 RCQGVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAKTLVCESLRKK
FT                 AARAENEKPP"
FT   CDS           2692..5703
FT                 /product="SARTTc3_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="ERETTVIRFLQINLNRSHGAHDAATSFCRRTGRDVIL
FT                 MSEPNEGRVRSNGWWTDDANDVAIAVMNKKIKVYARGKGLGFVWIDTGECI
FT                 IYSCYISPNVETVIAERALRNLVGSIGSHGGKPCVVTGDFNAKSPEWGGET
FT                 QDERGRLLSEWLATLNCVVYNDGIKPTFLKGRYQSWIDVTFSTENAARWVR
FT                 NWTVEEEETLSDHQFITFQLKLNGERTGNGQSSGRCCGWNTKGFSPSVIRH
FT                 SFVERMNAKQNKNCVSMVEAIKEACDMHLPKKGRTRNTGKQRVYWWNDDIA
FT                 RARNECISVKRRQMRLRARNRLEEVIEVTELYKQKRKIYRVLIRKAKEAKW
FT                 EELINEIERDQWGLGYQIATRKLRLGSEQITLSPQFRQRIADVLFPKHQIK
FT                 RWNLTETCEVEGITSNEMQQAVRKLKMGKVPGLDNIPVEIVKAIAHEQGEV
FT                 LMLEAYNGLLREGKFPKEWKRAKLVLLKKPGKEGGSPSDFRPICLLNVVAK
FT                 LYEQLILIKLKKELEEKGGLSEEQFGFQEGKSTLDAVDRVMALARWANSGD
FT                 TRRKRWCVLLTFDVKNAFNSANWQNIMEALRKKGISMYLRKVIGSYLSERS
FT                 LDLGEGQVMEVTSGVPQGSVLGPTLWNILYDGVLRLEIPKEATLVAYADDL
FT                 ALVVIEKDIENLMCTVEMKSKIIGRWMKENGLQVAPEKTEAVLLAGGRRPD
FT                 KNIVFKVENVELRPKQNVRYLGVDINQRMTFTSHVMRVAAKAEKMGAMLGR
FT                 LMPNVKGPSPSKRKVMAEVVNSIVMYAAPIWGPTALDMLKYQERLVQVQRK
FT                 TALRVCSAYRTVSADAVQVIAGMIPIDLRIHETVKVRNRTHTKREAREWSI
FT                 KEWQNRWNASSKGRWTHRLIPDIRQWIERKKNAGQVNFYLTQFLSGHGDFR
FT                 CYLRKMHRAENDRCVYCGEMDTAEHVLFQCGKWAGIRHRLEQLVNEKINPD
FT                 NLVEIMLRSNNNWRKVQRCTEDILKFKMEDEKTGQINSPRDPSEVLTSI"
XX
SQ   Sequence 5982 BP; 1966 A; 1154 C; 1664 G; 1198 T; 0 other;
     ccctccgatg ggatgccacc ttgtcgtggt ggaggggctt aagggtgtgt cggagcacct        60
     actaagagca tcccttttag cataccgtaa accctcaagg gggaacgggg ggacttttgt       120
     cctgcgagga gtaaacctct ataaactatc cattaaagaa cgccggaaag cccggtgaca       180
     gggtgtggcg accttggatg aaatcttagc tgggggagct gagcgccagc ccctcctaat       240
     accgcaaacc cgaggtcgat tcaacgactc tacacaaggc gtggtgtagg gaacgtctcg       300
     gctgatggga tcgggaggct tgccttaacc ggccggccta cgaggatgaa aacctctata       360
     aaaaatcctt aactcgctgg cggcttttgc agttttccga ccaagcgggt tgtggctgtt       420
     ggatgcaaca gccatggctg ggaggtgccc agtcaaacca ggtgaaacga ctatgggaga       480
     tggtgcgtcc ccataataca tagaaaacgc cttgtcctag gagcgggcgc tcccctggga       540
     tggaccccac cttatcgccc gtactcgtgg gatccacatg aaaaaggtaa acttgaaaca       600
     ggagaaagaa gctgggaaac tggctggaga aggtactctg aggaaagacc tgtcgaaaac       660
     agatgctttg aaagtagcgg cggggaaaca aaccgccaaa ctggacgagg cagagaatcc       720
     taaaactcca ggagaggact cgagtttggg gaacattaac ccgtttggta gatcaagcat       780
     gacgcctcga tctccacaaa gaaaagtgca aactagcttg atagtgggac aaacacccaa       840
     gctagacgaa acgatcgaag tgtacaagga aacaccaaca ggcgcaattc caaaaaggaa       900
     aagagtgtct actcctgagg aagcacataa agttaaaaag ctagttgaaa ctagaataaa       960
     aaaacagaaa agcctggtac taggaaatat aacctgtact gatatcctac aggcctttac      1020
     acaagtgaca agcagactgg caaaaaaggt caaggtactg caagacagaa ttgacgatac      1080
     tcctaacacg cgacgggaga tcaaaaatga cgcaaaagca gtatgttatg ccatggcaga      1140
     catgcaagct atgcaagatg atgtctttga agaaattttt aaatggcaga gacatataca      1200
     aatggaggat agcgatgacg atgttgtact cgtcgaatcg ccagaaaaca aaggggtggg      1260
     cattcaggta gccacccaga caaaagaagt tgtaacaaaa aacgcagaga ctcagactcc      1320
     tcttgaaatg tgggggaagt cgacacaagt aacagagatg tctcagcctg gacaattgag      1380
     agagccgctg tacatcgggg ataaaagatc ctttgttgat tttaaagacc tttcgaaacg      1440
     tgactggaaa gaaagttact tcgaaaaagt aaagattaag gcagtaaatc cgcttgccat      1500
     gatgccagaa gctgctccaa cgattattag gagtagagac aaaaaggaag aaggggcact      1560
     gttgaaaatg ttgcatcaac gatgtcctga gtacagagag tcggtgctgg aaggggagaa      1620
     ccctatagaa agcaaagtga ctccaattgt aagaagtgta gtggttggac acgtcgcagg      1680
     accaaaagag acactgaaaa actatatgtt tgtagttgcc ggtgacgaga aaaataaggc      1740
     aagtgggtat ctcaaagaga cctacgaagc cttggaagag ttgaaagaag tactcaaaga      1800
     gcttcaaatt gaaaaagtcg ctattggaag cgaccttaca ggccgagaag aacacctcag      1860
     aaagatgttg gaatacatct ttagagggga aaatgtggag gttacactgt gtgtacctat      1920
     tgcaaagaaa atgatatgga gagaccaagg gaaagcccag tctgccatat ctgtatcacc      1980
     aaaagggatg agaaaaacgg atgctgtaat tgtgcaaggc agcaaaaccg aaacatatga      2040
     agctgtactc aaagaagtac gcgaaagctt ggccgaaacg gactgcgaga tacgaacagt      2100
     ccgaaagact agagaaggta aacttctttt gctagttggc aaagaaggag atcaggcaaa      2160
     gaaagtcaag gaggcactaa gctccaaaat ggcaaatcgt aagatcgtgc tacgggatga      2220
     tagcacgaaa gaggacaaag tcctacatgt gaagggccta gatgcgctgg cagtggagac      2280
     tgaaatagtc agtagcgtag tagcagctat ggatggaacc atcacaaaca cagatttgga      2340
     ggtgacatct ctgcgaaaag catacggagg gagtaaggta gctacaatta aagtatctgc      2400
     gaaaagtgct gacgccattt tgagtaaggg caagataaag attggtttag tgacatgcaa      2460
     aatcactgaa cgagttaaca gtgttttctg ttataggtgt tgggagccag gacacatggc      2520
     ggcccgatgt caaggggtgg acaggtccaa actgtgccac agatgcggag aagaaggtca      2580
     ttcggtgaag acctgcgaaa aggagatgtt ctgcccggtt tgcggcgtaa ggggtcaccg      2640
     agcaaagacg ctggtgtgtg agagtcttcg aaagaaggcg gctcgcgctg agaacgagaa      2700
     accaccgtga tcaggttcct ccaaattaac ttgaacagaa gccatggtgc ccacgacgca      2760
     gcaacgagct tctgtagacg aacaggtcgg gatgtgatcc tgatgagcga acctaacgag      2820
     gggagggttc gcagcaatgg atggtggacg gacgatgcca atgatgttgc cattgccgtc      2880
     atgaacaaga agataaaggt ctatgcccgg ggtaaggggc ttggctttgt atggatagac      2940
     acgggagagt gtatcatata cagttgttac atttctccca atgtcgaaac tgtcatagca      3000
     gagcgtgctc tgcgtaacct agtgggcagc atagggtccc atggcgggaa accctgtgtt      3060
     gtgacgggtg acttcaatgc gaagtcaccc gaatgggggg gggagacaca agacgaaagg      3120
     ggacgtctgt tgtctgaatg gctagcaacg ctaaactgcg ttgtttacaa tgatgggata      3180
     aaaccaactt ttttgaaagg acgttatcaa tcctggatag atgtcacctt cagcaccgaa      3240
     aatgctgcac ggtgggtgag aaattggacc gttgaggaag aagaaactct cagcgatcac      3300
     cagtttatta cgtttcaact gaaactaaac ggagaaagaa ccggaaacgg tcagagctct      3360
     gggcgatgct gtggatggaa caccaagggc tttagccctt cggtgattcg ccatagcttc      3420
     gtagaaagga tgaacgcaaa acaaaataaa aactgcgtca gcatggtgga ggccatcaag      3480
     gaagcatgcg acatgcacct tccgaagaaa ggccgaacaa gaaacacagg taaacaaagg      3540
     gtttactggt ggaacgatga cattgcgaga gcaaggaacg aatgcatttc tgtcaaacga      3600
     agacagatgc gactgagggc cagaaataga ctggaagaag tcattgaggt aacagagctg      3660
     tataaacaga aaaggaaaat ttatcgtgtt ctcattagaa aagctaaaga ggctaaatgg      3720
     gaagaactga taaatgaaat tgaaagagac caatgggggc ttggttacca aatagccacc      3780
     aggaaactaa gactgggttc agagcaaatc actctaagcc cacaatttag acagagaata      3840
     gccgatgtgc tgttcccaaa acatcagata aaaagatgga atctcacaga gacgtgtgag      3900
     gtagagggca tcacctccaa tgaaatgcaa caggcggtac gaaagctaaa aatgggcaaa      3960
     gtaccgggac tagataacat tccagtggaa attgttaaag caattgccca cgagcaagga      4020
     gaggtactca tgttggaagc ttataacgga ctcctacgtg aagggaaatt cccgaaagag      4080
     tggaaacgag ctaaattggt tctactcaaa aaacccggaa aagaaggagg cagtccatcg      4140
     gattttaggc cgatctgtct cctaaatgtg gtagcgaagc tgtatgaaca gttaatactg      4200
     ataaagctca aaaaagagct ggaagagaaa ggaggcctaa gtgaagaaca gtttggcttc      4260
     caagaaggca aatctaccct cgacgcggta gacagagtta tggccttggc aagatgggct      4320
     aactctggag acacgagaag gaagaggtgg tgcgtgttgc tcaccttcga tgtgaaaaat      4380
     gccttcaact cggcaaactg gcaaaacatc atggaggcct tgaggaaaaa gggtatctcc      4440
     atgtacctgc ggaaagtgat aggtagctac ctatcagaaa gaagtctaga cttgggcgag      4500
     ggacaagtca tggaggtgac gagtggagtt ccacaaggtt cggtattggg gccgaccttg      4560
     tggaacatcc tttatgatgg agttcttaga ttggaaattc caaaggaagc gacgctagtg      4620
     gcatatgctg atgacctagc actagtcgtg atagagaagg acatcgaaaa cttgatgtgc      4680
     acagtagaga tgaagtccaa aattattgga cgatggatga aagaaaatgg cttgcaggtg      4740
     gctccagaaa aaactgaagc tgtgcttctt gcaggcggac gtagaccaga caagaacatt      4800
     gtctttaagg tggaaaatgt tgagctaaga cctaaacaaa atgtcaggta cttgggagta      4860
     gacataaacc agagaatgac tttcacgtca cacgtaatgc gtgtggcagc taaagcagaa      4920
     aagatggggg caatgctggg gaggctaatg ccaaacgtaa aaggaccatc accttcaaag      4980
     aggaaggtaa tggcagaagt agtaaattcg attgtcatgt atgcggcacc aatctggggt      5040
     cctactgcac tcgacatgtt gaagtaccaa gaaagattgg tacaggttca gagaaagaca      5100
     gctcttcgcg tatgctcggc ataccgaacc gtttcggcgg atgctgtcca agtaatagct      5160
     gggatgattc ccattgatct cagaatccat gagacagtca aggtaagaaa tagaacacac      5220
     accaagcgcg aggcgcggga atggtctatt aaagaatggc agaacagatg gaatgcaagt      5280
     tccaaaggca gatggacgca ccgtcttatt ccagatataa gacagtggat agaaagaaag      5340
     aagaatgcgg gtcaggtaaa tttttacttg acacaatttc tctcaggaca cggggacttc      5400
     cgatgttatt tgaggaaaat gcatcgagca gaaaatgaca gatgcgtgta ctgcggtgag      5460
     atggacactg ccgaacacgt attgttccaa tgtggaaaat gggctgggat acggcatagg      5520
     ctggaacagc tcgtcaatga gaaaatcaat ccagataatc tggtagagat tatgctgaga      5580
     agcaataata attggagaaa agtgcaacgt tgcactgaag acattttgaa attcaaaatg      5640
     gaggatgaaa agactgggca aataaacagc ccaagagacc cgtcagaggt gctgacgagt      5700
     atttaaaaca ggtggaatca gtcaaccatt gatttgaccg acgccaatcg caggaggcgg      5760
     gcgacggctt gggtcaatgg caatggctaa atgaaaagaa gcgtcataag acgcaggagc      5820
     tgaagctagt ggaggcgtag aaacagacaa gcccggcccc ctgaagacat gcctaacggc      5880
     gataccgggg cttcgggtag gtgaagaacg ggggaaccaa ttctacctta aggtcgggtt      5940
     ccacgtccag gagcggggtg gggctcctgg gtaaaaaaaa aa                         5982
//
ID   SARTTc4     repbase;    DNA;    INV; 4818 BP.
XX
AC   AB593324;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc4.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc4.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593324; Positions       1    4818.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           1751..4558
FT                 /product="SARTTc4_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MASIVAARKKVDLITFSEPNRLRCIKNNRHLYTKNDC
FT                 SVAILNASQIFNVTSYRTGECYVCVNVEDFIVYSVYISPNCSENMFNENLS
FT                 DLFNDVRIARIEGRRIIITGDFNAKNNFWGGQITDKRGEVLLETTESMGLY
FT                 ILNDGETPTLERINGSSYIDITIVSEEIIERNPIWTVLEDEISMSDHHFIL
FT                 LEVPMASKRQGKSKYILGIPNKDILNSMSREKTKDGAADVSRCEKSLIEAY
FT                 KKSAPQIRCNENYKMPFWWTEEIQNQIGRVRGKRKLFQRCKKEDVRETRKQ
FT                 DYKKEKKDLKKLITKSKRKSWAKRLDEDIFGDAYRIVKSQFAVQNPKTTLL
FT                 RQQREDIIDGLFITTIPMVCESWAEEIIPAEISTFTEAEVENACKRIKSGR
FT                 APGPDGLPPEVVKIVIKNNINYFRDLYNNLLTGNRFPDEWKSAKLILIEKP
FT                 KKNHTDEIKYRPICLINVLGKVYENLINLRLYEEIDAKGGFHKNQYGFRKG
FT                 KTTMHAIEKIIQIAKEANVSKKFNALVLIDVRNAFNTASWPIIVKKLKDIG
FT                 VQEYLINLVKSYFNNRTIQVSNDNKKNIGGGVPQGSILGPTLWNIMYNDVM
FT                 NIETEEDIQYICYADDLAISITAKDKEELMLKTNATLSAANVWMTHNELKI
FT                 APEKTEAIIFGCKKITNINFTIDGTTVKPTSSVTYLGIKIDRRLNFNKHID
FT                 AACEKAKCTIKALNAILPNVRGPKPNKRKILAMTMQSAILYGAPAWADATG
FT                 TCGNQKKLKTTQRIMALRTCSAYRTVSTDAAVVVAGLVPLHILAGERQRLY
FT                 NLRRHVTLEDRRKERKKSYQMWQKEWDESGSGRWTYKILPKIEKWVERKHG
FT                 HVSFYLTQCLTGHGAFCLYTKKIGKRASADCRYCGEGTEDTPLHTIVECPK
FT                 WEQRRRKLQGIVINKDMKMEDITNVMINSSKE"
FT   CDS           join(237..689,711..1301,1305..1718)
FT                 /product="SARTTc4_1p"
FT                 /translation="MMDEKGRKKFTVQEADPPVPVDVEARERAPLDGQPAT
FT                 VQIPPVGDQAGLSQITGMTSLDTEPIQRKDKILRTPPRPRACSVGEIPGYL
FT                 EKMMAREDDMPGSKRRRGADGKGEPISEVNVSLSKLLRTIGELETFVRQTR
FT                 MYTEKLKKLWLNSPLKIAIRGHKTITVAYFDPTRQDGRNKEDIFNILKELK
FT                 DCIKNDDVQETVVAMALPQGIETEQTRKILECIFYNTNCRIIVKDSDKKNT
FT                 KDRDRKSGQAIIIDGSSDTFADTLKKIKEVVKDEDQLERIQKVQRTAKEDL
FT                 MIKIAGEAKPIKDQIEEALQGQKIRTVGEAKQKTLHIRDINETCKEEEIRK
FT                 ILNARQIQAPNNFKIKSLRPTQRGTQMLTITAQEEDAEKLLALGKIRIGLT
FT                 QCKIEERVEVERCFKCWGYGHKANNCSGEDRTDHCRRCSGKGHKMEKCENE
FT                 AYCPLCNEKGHTPGSGQCKSFRKAIKEERKSLKKRNSTSYN"
XX
SQ   Sequence 4818 BP; 1831 A; 903 C; 1111 G; 973 T; 0 other;
     cccgtgtgaa gttttggctg gtcttccatc gggcgcctcc ccaggtggcg gataggggaa        60
     agcctcccag atatgggtgg taccggggaa atcaaatacc cggggcggac caaaaccagt       120
     caaggtcaca ccgtaactcc agacgtggtc tggaagcggg ggccgcgcgg tctcgggcct       180
     gcgaggacta gagggcctct ataaaaactt ccctctactt aaaatgatga caaaacatga       240
     tggacgaaaa aggaagaaag aagtttacgg tgcaggaggc ggaccctcca gtacccgtcg       300
     atgttgaagc gagagaacgg gctccacttg acggtcagcc agctaccgtt cagatacctc       360
     cggtgggaga ccaggccgga ctatcacaaa ttactggaat gacatctctg gatactgagc       420
     ctatccagag aaaagacaag atactcagga caccaccaag gccgagagcc tgttcggtgg       480
     gggaaatccc tgggtatttg gagaagatga tggcacgtga agacgacatg cctggcagta       540
     aaagacggag aggagccgac ggtaaagggg aacctataag cgaggttaac gtatccctaa       600
     gcaaattgct acggacaatt ggagaactgg agacattcgt aagacaaacc agaatgtaca       660
     cagagaaatt aaaaaaattg tggttgaact aaaatatggt ggcaaagtag tcgccactga       720
     agatagcaat acgaggacat aagaccataa cggtggccta ttttgatccc acccggcagg       780
     acggaagaaa taaagaagat atatttaata tcttaaagga gctaaaagac tgcattaaaa       840
     acgacgacgt acaagagacc gtggtagcga tggcactacc acaaggtata gaaacggaac       900
     aaacgagaaa aatactggag tgtattttct acaacaccaa ttgcagaata atagtaaaag       960
     actctgataa gaaaaatacg aaggatagag accggaaatc tgggcaagca atcataattg      1020
     atggctccag tgacactttc gcagatacac tcaaaaaaat aaaagaggta gtaaaagatg      1080
     aagaccaatt agagagaatc caaaaggtgc agaggacggc caaggaagat ttaatgatta      1140
     aaatagcagg agaagcaaag ccgataaaag accaaattga ggaagcccta caaggccaaa      1200
     aaataagaac ggtaggagaa gcaaaacaga aaacgctaca tatcagagac attaacgaga      1260
     cttgcaaaga agaggaaatt agaaagattt tgaacgctag atgacaaatt caagcaccaa      1320
     acaactttaa aatcaaatcc ttaagaccaa cccagagggg tacgcagatg ttaaccatca      1380
     ccgcccaaga agaagacgca gaaaaattac tagcattagg gaagataaga attggactta      1440
     cccagtgtaa aattgaagaa agagtagaag tggagagatg ttttaaatgt tggggatatg      1500
     gccataaggc aaacaactgc agcggcgaag atagaactga ccattgtcgc agatgctctg      1560
     gcaaaggcca taaaatggaa aaatgtgaga atgaagcata ctgtccttta tgcaatgaaa      1620
     aaggacacac gcctggcagc ggtcagtgca agagcttcag gaaggctata aaggaggagc      1680
     gaaagtcgtt aaaaaaacga aattcaacct cctacaacta aacgccaaca ggagtgacaa      1740
     ggcactcgat atggcctcca ttgtagcagc ccgaaaaaaa gtagatctta ttaccttcag      1800
     tgaaccgaat agattaagat gcataaaaaa caatcgacat ctttacacaa aaaatgactg      1860
     ctcggtggca atcctaaacg cgagccaaat ctttaacgtg acatcctacc gtactggtga      1920
     atgttatgtg tgtgtgaatg ttgaagactt cattgtgtac agcgtatata tcagcccaaa      1980
     ttgtagtgaa aacatgttta acgaaaacct gtcagattta tttaatgacg tgcgaatagc      2040
     aagaattgaa ggcaggcgga taatcattac tggagacttt aatgctaaaa ataacttttg      2100
     gggtggacag ataacggata agcgaggaga agtattgctc gaaacaacgg aatctatggg      2160
     cctatatata ctgaatgatg gagagacacc aaccctcgaa cgcataaatg ggtcatccta      2220
     tatcgatata actatcgtat cagaagagat tattgaaaga aatccaatct ggactgttct      2280
     agaagatgaa atttctatga gcgaccacca ctttatcctc cttgaagtac caatggcaag      2340
     caagagacaa ggaaaatcaa agtatatctt gggtatacct aataaggata tacttaatag      2400
     tatgtctaga gaaaagacca aagatggagc tgcagacgtc agcagatgcg agaaatcttt      2460
     aatagaagca tacaaaaaaa gtgcacctca aatcagatgc aatgaaaatt ataaaatgcc      2520
     attctggtgg accgaagaaa tacagaacca aataggcagg gttagaggga aaagaaaact      2580
     gttccaaaga tgcaaaaaag aagatgtaag agaaacaaga aagcaagact acaaaaaaga      2640
     aaaaaaagac ctcaaaaagc taattacaaa atcaaaaaga aaatcctggg cgaaaagact      2700
     agatgaggat atcttcgggg atgcatacag aatcgtgaaa tcacaatttg cagtacaaaa      2760
     tccgaaaaca actttactcc gacaacaaag ggaagatatt atagatggac tctttatcac      2820
     aactatacct atggtttgtg agtcgtgggc ggaagaaatt ataccggcag agataagtac      2880
     ctttaccgaa gcagaagtag aaaatgcatg taaaagaatc aaatcaggca gagcacctgg      2940
     gcctgacggc ctacctcccg aagttgttaa aatagtaata aaaaacaata taaattactt      3000
     tagagactta tacaataact tgctcacggg taaccgtttc cccgatgagt ggaagtccgc      3060
     gaaattaata ttaattgaga aaccaaaaaa gaatcataca gatgaaataa aatatagacc      3120
     catttgcctc ataaatgtct taggcaaagt gtacgaaaac ctaataaatc tgagattata      3180
     tgaagaaatt gacgcaaaag gtggttttca caaaaatcaa tatggcttca ggaaaggcaa      3240
     gacgacgatg cacgccattg aaaaaattat tcaaatcgca aaagaagcaa atgtaagtaa      3300
     gaagtttaat gcgttggtac taatagatgt ccgaaatgct ttcaacacgg cttcctggcc      3360
     gattatcgta aagaaactta aagatatagg tgttcaggaa tacctaatca atctagtcaa      3420
     gtcttacttt aacaacagaa ctatacaagt gtcgaacgat aacaagaaga atataggcgg      3480
     tggggttccc cagggatcaa ttctcggtcc aacactatgg aacataatgt acaacgacgt      3540
     tatgaacatc gaaacggagg aagatatcca gtacatctgt tatgccgatg atttagctat      3600
     ttcgataacg gctaaagata aagaagaact gatgctgaaa accaatgcta ctctgtccgc      3660
     cgccaatgta tggatgactc acaacgagtt gaaaatcgct ccggaaaaaa cagaagccat      3720
     catattcggt tgtaaaaaaa taacaaacat aaactttaca atcgacggaa ctactgtcaa      3780
     accgacttct tcggtgacat acctgggaat aaaaatagac agacgcttaa atttcaacaa      3840
     gcatatcgac gccgcatgtg aaaaagcaaa atgcacgata aaggcactga atgccatatt      3900
     acccaacgta cgaggaccaa aaccaaacaa gagaaaaata ctagccatga caatgcaatc      3960
     tgccatcttg tacggggcac cagcatgggc ggatgcgaca ggaacgtgcg gaaaccaaaa      4020
     aaaactaaag accacacaaa gaattatggc attacggacg tgcagtgcct accgcacggt      4080
     atctaccgac gctgcagtgg tggtggccgg cttggtacca cttcacattc tggcgggcga      4140
     aagacaacgc ctctataatc ttcgtagaca tgtaacctta gaagatagaa gaaaagaaag      4200
     aaaaaagtca taccaaatgt ggcagaaaga atgggacgaa tccggatcag ggagatggac      4260
     atacaaaatc ctcccaaaaa tcgaaaagtg ggtggaaaga aaacatggac atgtttcttt      4320
     ttacttaaca cagtgtctta cgggacatgg agccttctgc ttatacacaa aaaaaatcgg      4380
     gaagagagcc agtgctgact gccgatactg cggcgaaggt acggaggaca cacctctaca      4440
     cactatagtg gaatgtccca agtgggaaca acgtagaaga aaactgcaag gaatcgttat      4500
     caacaaagat atgaaaatgg aggatataac aaatgtaatg attaatagta gcaaggagta      4560
     gaaagagata tcaaaatttc tggaaagtat aatggaggaa aaaagcaagg acgaattgga      4620
     agagcagaag gaggaataaa gagagaaacg aaaatactcg tctgtggagg acaaggccac      4680
     aacggcggga acccctacag atggaagcga ggaggtggtt ttagtgggta tgcccagtag      4740
     aaagggagag tcccacacta ccccacaaac aatgtggggt gtgcgtaatc agcatttttc      4800
     cttctcggga aaaaaaaa                                                    4818
//
ID   SARTTc5     repbase;    DNA;    INV; 5308 BP.
XX
AC   AB593325;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc5.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc5.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593325; Positions       1    5308.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           169..2190
FT                 /product="SARTTc5_1p"
FT                 /translation="MGETNFKINLREGLASQESLLDSAAAEPSCSTDYGGS
FT                 KVVSDTQSKKKEKETKTQKEIGLTFVKMFRSPIDSNRIRRGSDSEILVKTN
FT                 TPQTEEKKRKVMDDNTPETSITEYANPRLNDTIDLMFDEANQKSVKQRKIQ
FT                 RSFSIGEYYNPNEISKTDLRNRMKKIIRELGQEAKKLNTKAKDNNTTKTQL
FT                 RDQALTVCSLVSQIANWEMLNCLTTEETTNKPPVSPIKSTEVLQKAWKEEE
FT                 NNKDVLKTIIEENWSSIHHKTEIINSTEKIGNDMLILVGNAQNKDLIKRVC
FT                 KHSDLIDTVLKSDIIERKKLVYNITSDYMFEDKNTEKESNTKINYILGTTQ
FT                 DNCELDTMYLGLEKVLSIHEDRKRQDLTIVETDTNFKYLQKIIEYLIRHNP
FT                 NIQNVKILKKAESWKTMLLKPTKQSKETIDIRIKETTTYHKVVREMKKEID
FT                 PVKYGVRILDVFEPVKQLIRIKYYANDIEKKKSFLEKVEQICNQSAVSIIT
FT                 KTASKEIFLKDIPRDCIAEDITEAINKTANSQSKEIDVFVSPDKGKGSKFA
FT                 VATVPAQIANTILEHKRIRIGWDWCRIEERIRLPRCFGCMEFGHTASNCKT
FT                 SSSKDKEKLLPRCLNCGADEHTAKTCKNKTKCYSCGTEGHRPSSMSCPNYK
FT                 KVVNELKAKNKGQVKENNISSKTNV"
FT   CDS           2186..5089
FT                 /product="SARTTc5_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MYKFLQLNTNRSRTAHDMLFATATETNAQILLVSEPN
FT                 KSTVQKPNWICDLNNDAAIRILSKDFKLRNSGAGTGFVWIQNENITIYSCY
FT                 LSPNSTIEEYTKTLDDIRDSTKHQQTHIIITGDFNAKSTAWGMPQTDARGS
FT                 ILNDWIAELNFITKNKSNYYTFERGTSKSIIDLTLVSQNVANNIQGSTTMD
FT                 TESLSDHKIISFKWETNLPDSHQYNSNQPPAWNLKSLNKAKLLKRFNKCGS
FT                 INSPEQLKDSLEKSCNAAMLKKSFSPKRRPCYWWNDRIAQLRKESIKARRA
FT                 VTRARPKTTLSQNLETKVNTLKIARDKLRKEIKISKHSKWQELCASIDDDV
FT                 WGNGYKIAMRKFGYRIEYKLTEDELENVVVHLFPRHPEVVWPEPIKNPIKN
FT                 FTLEELLIAAKRLKPGKATGPDGIPAEIIKIIAENETKKLLNVYNTCLRRK
FT                 SFPDCWKTARLILLPKPGKTNKEPGSYRPICILDSAGKLMEYLIHYRLEQE
FT                 VEKLGGLSTQQFGFRKGLSTSHAIQKVIQIAEKTRLVTYRHRKTCVMITLD
FT                 VKNAFNSAPWQVILQELKLKGISTSLIDLIRTYLNNRFILTEHGKLLEVNS
FT                 GVPQGSVLAPLLWNIMYDSVLRLSVAEDVELVGYADDLAVIVSAKTIEDLV
FT                 EKTNDTLDKIVHWMYSKKLKLAPDKTEAVLLNCRRKPPDVQFNIMGTLVTP
FT                 KEAVKYLGVWIGRNINFKRHITECAIKAEKTISALSSVMPNIGGPSTMKRK
FT                 MLSTVGHSVILYGAPIWAKAMDTISLRNKLLSLQRRMALRVTCAYRTVATD
FT                 SILAISGLPPIHLLTQERRQIFNGKTKEESRNLMLEKWQSEWSVSKSWSTY
FT                 LIKDIRKWFLRKHGALNYYLTQFLTGHGSFRKYLYERERSRDDECIYCGEK
FT                 DDAEHTIIYCSRWNLERQTVEEKLYIKLSTENIVDTMLEDEEKWLQINAFV
FT                 SAVLKAKSKEEEK"
XX
SQ   Sequence 5308 BP; 2109 A; 1051 C; 1037 G; 1111 T; 0 other;
     cctccccgag gagcaaccac tttgtcgtag tggggaggct taagtagctc caatgattgt        60
     agaggttatg ctggcggggg ccgcatgaag aggcccctgg tagggacacc cttgccagac       120
     aagctcgact atgaggagtg aaaaccaaga gttgctcaaa atacaaggat gggcgaaacg       180
     aactttaaaa taaatctccg ggagggtctg gctagccagg aatcccttct tgactcagct       240
     gctgctgagc caagctgctc cacggattac ggagggagca aagtcgtttc tgacacacaa       300
     tcaaaaaaga aagaaaaaga gacaaagacc caaaaggaaa taggattaac ctttgtgaaa       360
     atgtttagga gtcctataga cagcaacaga ataagaagag gaagcgattc tgaaattttg       420
     gttaaaacaa atacaccaca gacagaagaa aagaaaagaa aggttatgga cgacaacaca       480
     cctgaaacaa gtattacaga atatgcaaac cccagactaa acgataccat cgaccttatg       540
     tttgatgagg caaaccagaa gtccgtaaaa caaaggaaaa tacaacgaag cttctcgata       600
     ggagagtact acaacccaaa tgaaatctca aagacggacc taagaaacag aatgaagaaa       660
     attataagag aactaggtca agaggccaag aaactaaata caaaagcaaa agacaacaac       720
     acgactaaaa ctcaattaag agatcaagcc ctaacagtgt gcagtctggt cagccagatt       780
     gcaaactggg aaatgcttaa ttgcctgaca acagaagaaa ccacgaacaa gccaccggta       840
     agccccatta aatctactga agttctacaa aaagcctgga aagaagaaga aaacaacaaa       900
     gacgttctca aaacgattat agaagaaaac tggtccagta tacatcataa aactgaaata       960
     ataaacagta cagaaaaaat tggaaacgat atgcttatac tagtaggtaa tgcacaaaac      1020
     aaagacttaa taaaaagagt gtgcaaacac agtgatttaa tagacactgt gttgaaaagc      1080
     gatattattg agagaaaaaa actggtctac aacattacat cagactatat gttcgaagac      1140
     aaaaatacag aaaaagaatc aaacaccaaa attaactaca ttctaggaac cacacaagac      1200
     aattgtgaac tagacactat gtatctaggt ctggaaaaag tattatctat acatgaagat      1260
     agaaaaagac aggacctcac tattgtggaa acagacacaa acttcaagta cctacaaaaa      1320
     attatagaat acttaataag acacaaccca aacatacaaa acgtcaaaat tcttaaaaag      1380
     gctgaaagct ggaagacgat gctattaaaa ccaacgaaac aatcgaaaga aaccatcgat      1440
     atcagaataa aagagacaac tacctatcac aaggtagtcc gagaaatgaa gaaagaaata      1500
     gacccagtta agtacggtgt tcggatactg gatgtttttg aacccgtaaa acaactaatc      1560
     agaatcaaat actacgcaaa cgatatagaa aagaaaaaga gctttctcga aaaagtagaa      1620
     caaatatgca accagagcgc tgtaagcata ataaccaaaa cagcatcaaa agaaattttt      1680
     cttaaagata ttcccagaga ctgtatagca gaagacatta cagaagccat caataaaaca      1740
     gcaaatagcc aatcgaagga gattgacgtg tttgtttcac cagacaaagg aaaagggtca      1800
     aaatttgcgg tagccacggt gcctgcccaa atagctaaca ccattttaga acataaaaga      1860
     atacgaatcg gctgggattg gtgtcgtata gaagaaagga tacgtttacc cagatgtttt      1920
     gggtgtatgg aatttggtca tacggccagc aactgtaaaa cttcctcttc aaaagacaaa      1980
     gaaaaattac tgcctagatg tctcaactgc ggcgccgatg aacacacggc gaagacatgc      2040
     aaaaataaaa caaaatgcta cagctgcgga accgaaggac acagaccatc gagtatgtca      2100
     tgcccaaact ataaaaaagt tgtaaacgaa cttaaagcaa aaaacaaagg gcaagtcaaa      2160
     gaaaataaca tatcatccaa gaccaatgta taaattcctc caactaaata caaacagaag      2220
     cagaacagca cacgacatgt tatttgcaac agcaacggag acaaacgcac aaatcctcct      2280
     agtcagcgaa cctaacaaat ctacggtaca aaaaccaaac tggatatgcg acctaaataa      2340
     cgacgctgcg ataagaattc tttcaaaaga ctttaaacta agaaactcag gggcagggac      2400
     aggctttgtc tggatacaaa acgaaaatat aaccatatac agttgctact tgtcaccgaa      2460
     ttcaaccatc gaggaataca ccaaaacgct ggacgatatc cgggactcga ctaaacatca      2520
     acaaacacat attattataa caggcgattt taatgcgaaa tcaacagcat ggggcatgcc      2580
     tcaaacagat gcaagaggaa gtatattaaa cgactggatt gcagaactaa actttattac      2640
     caaaaacaaa tcaaactact atacatttga aagaggtaca tcaaaatcaa tcatagactt      2700
     aacactagta tctcaaaacg tcgcaaataa catacaagga tcgacaacga tggatacaga      2760
     atccctcagc gaccacaaaa tcatttcttt caaatgggaa acaaatttac cagatagcca      2820
     tcagtataat tcaaaccaac ccccagcgtg gaacctaaaa tcattgaata aggcgaaact      2880
     cctaaaaagg tttaataagt gtggcagtat aaactcgccc gagcaactaa aagacagtct      2940
     tgaaaaatca tgcaacgctg cgatgttaaa gaaatctttt tcaccaaaac gaagaccctg      3000
     ctactggtgg aacgatcgta ttgcccaact ccggaaagaa tctatcaaag ccagacgagc      3060
     tgtaacaaga gctcgaccta aaacaacatt gtcacaaaac ctagaaacta aggtaaacac      3120
     actaaaaata gcaagggata aactacgaaa ggaaataaaa atctcaaaac attcaaagtg      3180
     gcaggaatta tgtgcctcaa ttgatgacga cgtctgggga aacggctata aaatagcaat      3240
     gagaaagttt ggctacagaa tagaatacaa acttactgag gatgaactgg aaaacgttgt      3300
     agtgcatctg tttccgcgcc atcctgaagt agtatggccc gaaccaataa agaaccccat      3360
     aaaaaatttc acactggaag aactactaat tgccgccaaa cgcctgaaac ctggtaaagc      3420
     cactggacca gatggtattc ctgcagaaat tattaaaatt atagcggaaa atgaaacaaa      3480
     gaaactacta aatgtataca acacctgtct aaggagaaaa tcctttccgg attgctggaa      3540
     aacagcacga ctaattcttc ttcctaaacc tggaaaaaca aacaaagaac caggttcata      3600
     cagaccaatt tgtatcttgg attcggcagg caaattaatg gaatatctta tccactatag      3660
     actggagcag gaagttgaaa aactgggcgg tctgtccaca caacaatttg gtttccgcaa      3720
     aggactatca acatcccacg ctattcaaaa agtcatacag atagcagaga aaactagact      3780
     agtcacatat agacatcgta aaacttgcgt tatgataact ctagacgtta aaaatgcatt      3840
     taattcggca ccgtggcagg ttatacttca agaattgaaa ctaaaaggga tatctacatc      3900
     cctcatagat ctgattagaa catacctgaa caaccggttt atactcaccg aacatggtaa      3960
     actactagaa gtaaacagcg gggttccaca ggggtcggtg ctcgcaccac tgctatggaa      4020
     tataatgtat gacagtgtcc tgagactgtc ggttgcggaa gatgtcgagc tcgtgggata      4080
     tgccgatgat ttggctgtga ttgtatctgc aaaaaccata gaggatttag tagaaaaaac      4140
     aaatgatact ctagacaaaa ttgtacactg gatgtacagc aaaaagctaa aattagcacc      4200
     cgataaaaca gaagcagtac ttctaaattg cagaagaaaa cctccggacg tacagtttaa      4260
     tatcatggga actttagtta cgccaaaaga agcagtaaaa tacctcggcg tgtggatagg      4320
     aagaaatatc aactttaaaa ggcacataac agagtgcgct ataaaagcag aaaaaacgat      4380
     ctctgcatta tcatcagtaa tgcctaacat tggaggtccg tcaacgatga aaagaaagat      4440
     gttgagcaca gtgggacact ctgtaatttt atacggagca ccaatatggg caaaggcaat      4500
     ggacacaata tcacttcgga acaaactttt atcgctacaa cgtagaatgg cacttagggt      4560
     gacatgtgcc tatcgcactg ttgctacaga ttcgatttta gctataagcg gcttacctcc      4620
     tattcaccta ctaacacagg aaagacgaca aattttcaac ggcaaaacaa aagaagaaag      4680
     tagaaacctc atgctagaaa aatggcagag cgaatggagt gtatctaaaa gctggtcaac      4740
     atatctaata aaagatataa ggaaatggtt tctaagaaaa catggtgcct taaattacta      4800
     tttaactcaa tttctgacgg gacatggcag ttttagaaaa tacctctacg aaagagagcg      4860
     aagcagagat gatgaatgca tttattgcgg cgagaaagat gacgctgaac acactattat      4920
     atactgctct agatggaact tagaacgtca aaccgtagag gaaaagctat atataaaact      4980
     atccaccgaa aatatagtag acacaatgtt ggaagatgaa gaaaaatggc tacaaatcaa      5040
     cgcctttgta tctgccgttc taaaagcaaa aagcaaagaa gaggagaagt gaaagtaaat      5100
     tggcaagagc aaatggccca cccaccatga agtaatgccc actaagttcc gtggtggtgt      5160
     tggaagagcg gtgggtggtt tttttagtgg gtcgggatgc atcgcatgac ccaaccccac      5220
     actccccggc tcacgacatc caagccggga gctcctgtag gagtttttcc cccaccgcta      5280
     taaaaaaaat gaaaaaaaaa aaaaaaaa                                         5308
//
ID   SARTTc6     repbase;    DNA;    INV; 5774 BP.
XX
AC   AB593326;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc6.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc6.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593326; Positions       1    5774.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           2636..5587
FT                 /product="SARTTc6_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNCIQLNMNRSQTVHDCLYCLARKLDTHILIVSEPNK
FT                 KHIRKGGWYVDELESAAIKILSRDIKVLSWGSELGFIWVQTSLCYVFGCYI
FT                 SPNVSFNDFENYLYRLRDSLRGRGGAAVVAGDFNAKAYAWGSHTEDARGSA
FT                 LADLIGELNMVVINRGEKPTFQRGESASFIDVTFSSSNMAGSVVGWEVLDA
FT                 EVCSDHLPISFKIDVAKRLPNPPFPRGGWKWDEDKRDGLADCLHRRLLGSD
FT                 LLMAEDLTEAIGKACDESLLRKKGNYAGRRPVYWWTPEVKASWKASTESKR
FT                 KLMRANRNRAVREQQQDLLEKLKEMHRTARKELRRQIRRAKAKAWESLVES
FT                 VDQDPWGRAYQIATRKMRIDVLPTEGEVARAVQKLFSVRPEIRWAIPEVET
FT                 PRAFTTEELRTATQRLRSGKAAGPDGIPAEVVRLAVEVSAGTVLRVMNDSL
FT                 AGRKFPERWKRARLVLIPKDGRDSEGNLKLRPICLLDCLGKLLEQLLRARL
FT                 LEELEERGGFSEHQYGFREGRSTLDAMEEAIKFAHFACSVFWGRKDLCALT
FT                 TVNVENAFNTAPWDKIVDALTGRNISPGLTAMVMSYLEGRRLIVGDDQEIA
FT                 VTCGVPQGSVLGPILWNVMYDAVLRLDLPVGARTLAFADDLALLTTARTED
FT                 ELMRLTNEALSEIARWMVNAELKLATVKTESVLLVGYRRPGAIQLSIGDEV
FT                 IRPQKSIRYLGVYLDQQMSFTPHIQQTVARTERTIAMLGRLMPNLGGPASG
FT                 TRKLLNSVATSILLYGSEVWVDGLRFQQNKKLLVAVQRRSLLKVISGYRTV
FT                 SAEAAQVIAGVPPIILLAEERASLRRGTDRRVARSRIMARWQREWEEAENG
FT                 KWTRALIPDVETWANRGHGTVNFYLTQALSGHGCFGSFLFRIGKSDSDACW
FT                 YCGEKDDPKHTLFYCVRWEEERLKVMKARAQWPVLDNFTDLLLQGPDEWEA
FT                 VKRMARNILRKKEADERRLEEERQVERWR"
FT   CDS           join(236..997,852..2636)
FT                 /product="SARTTc6_1p"
FT                 /translation="MADGKKAQRSTVQGRDTPVPVGEGVLERALTDGQQAT
FT                 ARTSLVGNQAEMSRNATGSMEEEESTRRESTDDVVFIETEQNTGETTPMRS
FT                 SGTGTTSDTTKARKELTGKKDLVTRMEDIFKQKRQETLGRPGRSGSFSEAT
FT                 NKKRKASDISPMGTGYQGAYKLRESPEVFTLMEAISAVTRTTDKLQSLVKG
FT                 MYQPKTELVSLVETLKKHKNFRKDHNYGVVGETPIRTCRKGDLRCGHTGQH
FT                 GRWGEQWCAPVRARNTKIFGRTIITEWLEKHRYEPAEKVTYDVDTQVNMVD
FT                 GESSGALQCELDYANSRVRDLEALIAANTYSQDTSEDKEEMMHLKDELERL
FT                 RMENKRLAEENESLRAQMAQTSEITIKERTSIGDIETSDNFKLAALERWND
FT                 SLFRNVEVKVGNPLASEDNVVKVILVEHDDREISRSIQRLYRDRYPELKEM
FT                 EGDFGTLEQVSRLRIKGETKTFQRKVIKINIGTDEKSVWDSLTRLREETKD
FT                 DERVAIHHVNCMGNHNLRKMVACIFHEGKTKVYIYTTQSREQEERGTEDRT
FT                 TRKRNTYALIIDSKKEEYRETVRKIKAMIANEGAKNAIREVRSTREGKVII
FT                 KLDKDEAALKSLKYKLNGVTNDQYKKLFRIPSVGEKLEMETIHIRGIDAAT
FT                 DIEELRSAIEEKVGRLDQNEIQLGQLRQNRGETQAATIRMVKKKAEEILKE
FT                 KTIQVGMVRAQVERRVEVLRCFNCLGYNHKASECTEERRNKSCYRCGGEDH
FT                 MAKDCKSTEEFCVVCRSAGHRAGSGKCRLFKQALAAAKKEHKSRGGQKISR
FT                 CQTCKVDGHKEETMACPKHKDALRDKTEKRKRISSERMEEESNPTSS"
XX
SQ   Sequence 5774 BP; 1762 A; 1130 C; 1782 G; 1100 T; 0 other;
     gtccccgtgt ggagttcaac tggtctccca tcgggcgcct ccccaggtgg cggatagggg        60
     aacgcctccc agatatgggt ggtaccgggg aaatgaaata cccggggcgg accaaaacca       120
     gtcaagatca caccgtaact ccagacgtgg tctggaaacg ggggccgtgc ggtttcgggg       180
     ccgcggggtt aggagagcct ctataaaaac tcttctactt aacaattgaa cgacaatggc       240
     agacggtaaa aaggcacaac ggtctacggt gcaggggagg gacaccccag tacccgtcgg       300
     agagggagtg ctcgagcggg ctctcaccga cggtcagcaa gcgaccgctc ggacatcatt       360
     ggtaggcaac caggccgaga tgtccaggaa tgcaactgga agcatggaag aagaagaatc       420
     gacaaggaga gagagcacgg atgatgtggt tttcatagag actgagcaga atactgggga       480
     gacgacgcct atgcgatctt ctggcactgg caccacttcc gacaccacta aagcaaggaa       540
     ggaattgaca ggtaagaaag atctggtgac gagaatggag gatatcttca agcaaaagag       600
     acaagagacc ttgggaagac ctgggagatc aggttctttt tcagaggcga cgaacaaaaa       660
     gcgaaaggca agcgacatct ccccaatggg aacgggttac cagggtgcgt acaagctaag       720
     agaaagtcca gaggtattta cgttgatgga ggctatatcg gcggtgacga ggacaacgga       780
     caagctacag tcactggtga agggtatgta ccaaccgaag acggaattgg tttctttggt       840
     ggaaacgctg aagaaacaca aaaattttcg gaaggaccat aattacggag tggttggaga       900
     aacaccgata cgaacctgcc gaaaaggtga cctacgatgt ggacacacag gtcaacatgg       960
     tagatgggga gagcagtggt gcgctccagt gcgagcttga ctatgcaaat agtcgagtaa      1020
     gggatctgga ggcgctcatt gctgcaaata catatagcca agatacgagc gaagacaagg      1080
     aggaaatgat gcatctaaaa gacgagctgg aaagactgcg aatggaaaat aaaagactag      1140
     cagaggagaa cgagagtctg agagcacaga tggcccaaac gtcggagata acgataaagg      1200
     aaagaacatc aataggggat attgagacat ccgataactt taaattggcg gcgctggaaa      1260
     gatggaacga ttcactgttt aggaatgtgg aagttaaggt tggaaatccg ctcgcctcag      1320
     aagacaatgt ggtgaaggtg atcttggtgg aacacgatga tcgtgaaata agtaggagca      1380
     ttcagaggtt gtatcgggat cgctacccgg agctcaagga aatggagggc gattttggga      1440
     cgttagagca ggtgtcccgc cttagaatca aaggagagac caagacattt caaaggaagg      1500
     taatcaagat taacatcggt acggatgaga agagcgtttg ggatagtcta acacgactaa      1560
     gggaagagac gaaggacgat gagagagttg ccatacacca cgttaactgt atggggaacc      1620
     acaacctgag gaaaatggta gcatgcattt ttcacgaggg caagactaag gtgtacatct      1680
     acacaacaca aagtagagag caagaagaga gggggacaga ggacagaaca acaaggaaaa      1740
     gaaatacata tgctcttatc atcgattcaa agaaggaaga gtatagagaa acagtccgga      1800
     agatcaaagc tatgatagca aacgaaggag caaagaacgc cattagggaa gttagaagca      1860
     cacgggaggg gaaggttatc attaaattgg ataaggatga ggcagcactg aagagcctaa      1920
     agtataaact gaacggagtc actaatgacc agtacaagaa attgttcaga attccaagtg      1980
     taggtgaaaa actggaaatg gaaacaatcc atattagagg gattgacgcg gcaacggaca      2040
     tagaagagtt aagatctgcc atcgaagaga aggtgggaag actggatcaa aacgaaattc      2100
     aactaggcca gttgagacaa aaccgcggag aaacacaggc ggcgacaatt agaatggtta      2160
     aaaagaaagc tgaagagatt ctaaaggaaa aaacgatcca agtagggatg gtaagggcgc      2220
     aagtggaaag aagggtggag gttcttagat gcttcaactg cctaggctat aaccataagg      2280
     catcagaatg cacggaagaa agacgcaata aatcatgcta taggtgtggt ggtgaagacc      2340
     acatggctaa agactgcaaa agcacggaag agttttgtgt tgtgtgtcga agcgcaggcc      2400
     atagagctgg cagcggaaag tgcaggttgt tcaagcaggc gctagcagca gcaaagaaag      2460
     aacataagtc caggggagga cagaaaatca gcagatgtca aacctgtaaa gtggatggcc      2520
     ataaggaaga aacaatggca tgcccaaaac acaaagatgc cctgcgggat aaaacagaga      2580
     agaggaaacg gatttcgagt gaaaggatgg aggaggagtc aaatccgaca tcatcatgaa      2640
     ctgtatacaa ctgaacatga accgcagtca gaccgttcat gactgcctat actgcctcgc      2700
     gaggaaactt gacactcaca ttctcatagt gagtgaacca aacaaaaagc acatacgtaa      2760
     aggagggtgg tatgttgacg agctggagag cgcggctatt aaaatcctat cacgggacat      2820
     caaagtgctt agttggggaa gtgagctggg ctttatttgg gtccagacaa gtttgtgcta      2880
     cgtgttcggt tgttatattt caccaaatgt tagttttaat gactttgaaa actatttata      2940
     tagactcagg gattcccttc gaggcagggg tggtgctgcc gtggtggcag gcgacttcaa      3000
     tgccaaggcg tatgcttggg gttcgcacac ggaggatgcc agagggtcgg ccctggcaga      3060
     tctgataggc gaactcaaca tggtggtcat aaataggggc gaaaagccca cgttccagag      3120
     gggagaaagt gcgtctttca tagacgtaac tttttcttct tccaatatgg cgggtagcgt      3180
     tgtaggctgg gaggtgctcg atgcagaagt ttgtagcgat caccttccca tcagttttaa      3240
     aatcgacgtt gcaaaacgcc tcccaaatcc gccctttccg cgaggggggt ggaaatggga      3300
     tgaagacaaa agagacgggc tggccgattg tctacacagg aggctgctcg ggagtgatct      3360
     actgatggca gaggacctaa cggaggcgat aggaaaggca tgtgatgagt cgctattaag      3420
     gaagaaagga aactatgcgg gaaggaggcc agtatactgg tggacacccg aggtgaaggc      3480
     cagttggaaa gcaagtaccg agtcaaaaag gaaattgatg agggcaaacc gcaatagggc      3540
     agtgagggaa caacagcagg atttactaga aaagttaaaa gaaatgcaca gaacggctag      3600
     aaaggaacta aggcgtcaga ttagaagggc aaaggctaaa gcttgggaat ccctggttga      3660
     aagcgtggac caggacccat ggggtagagc gtaccaaata gcaacgagaa agatgaggat      3720
     cgatgtcttg ccaaccgagg gcgaggtcgc acgcgcggtg cagaaattgt tttcggtgag      3780
     gccggagatt cgatgggcaa tcccggaggt ggaaacgccg agggctttta ctaccgagga      3840
     actacggacg gccacacaga ggcttcgtag cggtaaggcc gccggtccgg acggaatccc      3900
     ggcggaggtc gttcgcttgg ctgtggaggt gtccgccggg actgttctac gcgtcatgaa      3960
     cgactccttg gccgggagga aatttccgga gcgatggaag agagcgagat tggttctaat      4020
     accaaaggac ggcagggact ctgagggtaa tctcaagttg aggccgattt gtttgttgga      4080
     ctgcctgggc aaactactgg agcagctttt gagggcaaga ctgctagaag aactggaaga      4140
     gagagggggt ttctcagaac accaatatgg ttttcgtgag ggacgctcga cattggatgc      4200
     gatggaggag gcaatcaagt ttgcccattt tgcatgcagc gtattctggg ggcgcaaaga      4260
     cctgtgcgct cttacaacgg tcaacgtgga aaatgccttt aatacggcac cgtgggacaa      4320
     gatcgtggac gcgctgacgg ggaggaacat atccccaggg ctgacggcaa tggtgatgag      4380
     ctacctggag ggcaggcgct tgattgtcgg agacgatcag gagattgcgg tgacatgcgg      4440
     ggtaccacag ggttcggtac tgggacccat tctgtggaat gtcatgtatg acgcggttct      4500
     acggctggat ctgccggtgg gagccaggac actggctttt gccgacgacc ttgctctact      4560
     gaccacggct cggacggagg acgaactgat gcgtctcact aacgaggcgc tgagcgaaat      4620
     agcgcgctgg atggtgaacg ccgaattaaa actagcgacg gtaaagacgg aatctgtttt      4680
     actggtgggg taccgaagac cgggagctat ccagttaagc ataggcgatg aggtaattag      4740
     accccaaaaa tctatcagat atttgggtgt ctacttggac caacagatga gctttacacc      4800
     gcacatccaa cagacggtgg caagaacgga aaggactatt gcgatgctgg gcagattgat      4860
     gcctaaccta gggggacccg ccagtggaac gaggaagcta ttaaattcgg tggctacgtc      4920
     gatcttgctg tatggatctg aggtatgggt agatggccta cgtttccagc aaaataagaa      4980
     attgctggtg gcagttcaaa gaagatcctt gctaaaagtg atcagtggat acaggacggt      5040
     gtctgctgag gcagcgcaag tgattgcggg agtaccgcca attatcctgt tggcagaaga      5100
     gagggcaagc ttaagacgcg gaaccgacag gcgagtagcg aggagccgga ttatggcacg      5160
     gtggcagagg gaatgggaag aagctgaaaa cggcaagtgg accagggcac tcatcccaga      5220
     cgtagagaca tgggctaatc gagggcatgg aacggtgaat ttctacctga cgcaggccct      5280
     gagcggacat ggatgcttcg gtagtttcct cttcagaatc ggtaagagcg acagcgacgc      5340
     ctgctggtac tgtggagaga aggacgatcc taaacacaca cttttctact gtgtgcgttg      5400
     ggaagaggaa cgcttgaagg tcatgaaggc cagggcacag tggccagtac tggacaactt      5460
     tacggatctg ttgcttcagg gtcccgatga atgggaggcg gttaagagaa tggcaagaaa      5520
     catcttgagg aagaaagaag cagacgaaag gagacttgag gaagagcgcc aggtagaacg      5580
     atggcggtga ataagaatcg gagatggcac tgccgcgtga taatgcccta tgcagggtgc      5640
     aaaccgtggc agatggcctg aaacagagga aagggagttt agtgggttag aggcccacac      5700
     tcctcgggcc gctcagaaca tcaaagaccc gggggacggc tgtgaagctt ctccttaacc      5760
     tcttaaaaaa aaaa                                                        5774
//
ID   SARTTc7     repbase;    DNA;    INV; 4051 BP.
XX
AC   AB593327;
XX
DT   11-SEP-2012 (Rel. 18.07, Created)
DT   11-SEP-2012 (Rel. 18.07, Last updated, Version 2)
XX
DE   Complete sequence of retrotransposon SARTTc7.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SARTTc7.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Osanai-Futahashi M. and Fujiwara H.;
RT   "Coevolution of telomeric repeats and telomeric repeat-specific
RT   non-LTR retrotransposons in insects.";
RL   Mol Biol Evol 28(11), 2983-2986 (2011).
XX
DR   EMBL/GenBank/DDBJ; AB593327; Positions       1    4051.
XX
CC   This family of non-LTR retrotransposons is specifically inserted
CC   into insect-type telomeric repeats (TCAGG)n.
XX
FH   Key           Location/Qualifiers
FT   CDS           912..3839
FT                 /product="SARTTc7_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MANKQIRFMQLNMNRCAAAHDLANKIMQEERIDILLG
FT                 QEPNSKKAQRLICDTNCGSFIVMGNEVSYNNLICDKDYLAADLPSLRIVST
FT                 YFSPNGSEEDFILLLESLEQRVREGNLETIISGDLNAKSPIFGSSVTNRRG
FT                 ILLEEFVESNNLIVLNKGDEATFIGPGGSSVIDVTLATTKVGGRIRDWRVD
FT                 TQENLSDHQTIKFSICAEFSMPKTLYETGGWKITPKSWATVEAMATLTPML
FT                 KKETCTPTEMIQQITEFCNKYLPMRQKTSRRRSVFWWTKEISETRICCMKL
FT                 RRRYLRLRKKQQHTEEDYKEYIGAKRALKTQIKKQKDKCWKELCDKLEGDI
FT                 WGKAYKIVMGRLGPRPQTTLKDEQIVSQVQKLFPNHPTRRWSIDGTEVVPV
FT                 PISTQEILEAAKCIKTKKAPGLDYLLPEVVKLAAKTCPDEVAVVFNSCLNR
FT                 GEFPEIWKSARLVLIEKPKKCPSDSPTYRPICLLNVSGKLLETVIKRRLEK
FT                 ELRERGIPHEHQYGFRSGKSTIDAITKVLEAPNSIEEKISYKRKKFCLLIT
FT                 LDIENAFNSAPWDGIIAALERSGVSRYLNNIIKSYLTDRYIETAERKKIRM
FT                 TCGVPQGSVLGPTLWNLFYDQILRLDMEDGVYTVAYADDLAVVVTDVCVDR
FT                 LRDKAEYAIRNIIDKLQNMGIRLCLHKTEMILMSGRRKLRELTVRIGELEI
FT                 TTKPNLNYMGIVLDKDITMKAHVNYVSKKADKVMGKLSRVLPNIGGPSLLK
FT                 RKVLTSVVTSIIYYAVPTWSKVLKYNAYLAKLERITRRMALRITMAYRTSP
FT                 TKALLVIAGVPPVQLKVQERCKIYQKNEKEQAQKELLQKWQESWNTYEGWT
FT                 KVFIKNIELWINRKVVGVDHHVTQALTGHGAFGRYLQRIKKQDHARCQYCD
FT                 WETDDARHTIFQCVRWENVRLEAETRCGRIINEETISTLLTGEEDTSDAVF
FT                 NMIRSIMREKNKDGVKNKQIE"
FT   CDS           join(194..421,414..908)
FT                 /product="SARTTc7_1p"
FT                 /translation="MITNQENTKFSIEKYCFFIRFIRYIRSMFGKQKQQPR
FT                 KSHKNQARFGRNWRERKNVRFWFNRQPTIQCQICTIGTSALAKKYVKNSTH
FT                 AASFFFNERLIETAIKEAIEPNEETYIKIGDPRPNRDRTLAVTATVDQRTS
FT                 DKIIESRYLRVGLVKCSVEKRIDLKRCFKCWAFDHEAAQCDGTDRKDLCFK
FT                 CGQKGHASKTCENEEYCPICAVQGHKTGGGRCKAFKKALSLARRGERQQLF
FT                 "
XX
SQ   Sequence 4051 BP; 1455 A; 745 C; 902 G; 949 T; 0 other;
     gacgcagttc cacgagacaa gctcacattc agtgaaagag tttttaaatt cttcatagac        60
     gataacctca ggaaaagctt ctcgaaattc ctccaggcac ggttgaattg aatatttcca       120
     aacaccgttc actttctctc catttcggaa ataactttcc aacaaaaagg ctttttgttc       180
     actggtatac accatgatta caaatcaaga aaacacgaaa tttagtattg aaaaatactg       240
     tttttttatt cggtttattc ggtatattcg gtctatgttc ggaaaacaga aacaacaacc       300
     acgaaaatca cacaaaaacc aagctcgttt tggtagaaac tggcgggaac gaaaaaatgt       360
     caggttctgg tttaataggc aaccaacaat acaatgccaa atttgtacca taggcactag       420
     ctaagaaata cgtaaaaaat tcaacgcatg ctgcgagttt tttttttaat gaacgcctga       480
     tagaaacagc aataaaagaa gcaatagagc ccaatgaaga gacttatata aaaataggtg       540
     accctcgccc taatcgagac aggaccttgg cagtaacagc tacagtagac cagagaacat       600
     cagataaaat aatagaatcg cgttacctgc gggttggttt agtaaagtgc agcgtagaaa       660
     aacggataga cttgaaaagg tgttttaaat gttgggcttt tgaccatgag gcagctcaat       720
     gcgatggaac agatagaaag gatttgtgct ttaaatgcgg acaaaaaggt cacgcatcca       780
     aaacctgtga aaatgaagaa tattgcccta tttgtgctgt tcaaggacat aaaaccggag       840
     gtggccgctg caaagctttc aagaaggcac ttagtttagc aaggaggggc gaaagacaac       900
     aattattcta aatggctaac aaacaaataa gatttatgca gcttaatatg aatcggtgcg       960
     cagctgccca cgacttggct aacaaaataa tgcaagaaga aagaatagac atccttcttg      1020
     gacaggagcc taatagtaaa aaagctcaaa gacttatctg tgatacgaac tgtggtagtt      1080
     ttattgtgat gggaaatgaa gtgtcttata ataacctgat ctgtgataaa gattatctag      1140
     cggccgatct accatcgcta cgaattgtgt ctacctactt ttctcctaat gggagcgagg      1200
     aagactttat tctgcttctg gaaagcttgg agcagcgagt aagggaaggt aatctagaaa      1260
     cgattatctc aggggatcta aacgcaaaat cgccgatctt cggatcgtct gttactaacc      1320
     gtaggggcat ccttctagag gagtttgtag agtctaacaa ccttatagta ctaaataaag      1380
     gagacgaggc tacgtttatt gggcccggtg gaagctccgt tatcgatgtg acgcttgcga      1440
     ctacaaaagt tgggggaagg atacgggact ggagggttga tactcaggaa aacctgtccg      1500
     accaccaaac tatcaaattt tcaatatgtg ctgaattttc catgccaaaa acattatatg      1560
     aaaccggtgg atggaagata acacctaaat cctgggccac agtagaggca atggcaacct      1620
     taactccaat gctcaaaaaa gaaacttgta caccaaccga aatgatccag caaattactg      1680
     agttttgtaa taaatattta cctatgcgac agaaaacgtc aaggcgccgt tcagttttct      1740
     ggtggacgaa agagatttct gaaacaagaa tctgctgtat gaaacttaga agaagatatc      1800
     ttcgtctaag aaaaaagcaa caacacactg aagaagatta taaagaatac ataggggcca      1860
     aaagagcttt aaaaactcaa ataaagaaac aaaaagacaa atgctggaag gagctttgtg      1920
     acaagctgga aggtgatatc tggggtaagg catacaaaat agttatgggc agactaggac      1980
     ctaggcctca aacaacgcta aaagatgagc aaattgtaag tcaagtacaa aaactttttc      2040
     ccaatcaccc aactaggcgg tggtcaatag atggtactga agttgtgcca gtcccaataa      2100
     gtacgcagga aatcctagaa gcagctaaat gtattaaaac aaaaaaagca ccagggttgg      2160
     attacttact tccggaagta gtcaagttag ctgctaaaac atgcccagat gaggtcgcag      2220
     ttgtgtttaa ttcctgccta aatcgtgggg aatttccgga aatctggaag tcagcaaggc      2280
     tggtacttat agagaagccc aagaagtgtc caagcgatag tcctacatac agaccaatat      2340
     gtcttctaaa cgtgtccggt aaactcttag aaacagttat caaacgcagg ctggaaaaag      2400
     aactgcgaga acgcggtatt ccgcatgaac atcaatatgg cttcagaagc ggcaagtcga      2460
     caatagatgc aattaccaag gttttagagg cacctaatag catagaggaa aaaatatctt      2520
     ataagaggaa aaaattctgc ttacttataa cgttggacat tgaaaacgcg tttaactcag      2580
     ctccgtggga tggtataata gcggccctgg aacgcagcgg tgtaagtaga taccttaaca      2640
     acatcataaa atcctaccta acagacaggt atatagaaac cgcagaaaga aaaaagatac      2700
     gtatgacctg tggtgttcca cagggctcgg tcctcggacc taccttgtgg aacctcttct      2760
     acgatcaaat tctacgcctg gacatggaag atggagttta taccgttgca tatgccgacg      2820
     atcttgctgt cgtagtgaca gatgtatgtg tggatagact aagagataaa gcggaatatg      2880
     caattcgaaa tataatagat aagctacaga atatgggtat tagactgtgc ttacataaga      2940
     ccgaaatgat cctgatgagt ggacgacgaa aactacgaga actgacggtt agaattgggg      3000
     agctggaaat cacaacaaaa cctaatctta actatatggg cattgtattg gataaagata      3060
     ttacaatgaa ggcgcatgta aactatgtta gtaaaaaggc tgacaaagtt atgggaaaac      3120
     tgtctcgagt gctcccgaac ataggaggcc catcattgtt aaaaagaaaa gtgctgactt      3180
     cagtggtaac ctcaataatc tattacgcag ttcctacttg gtcaaaagtg cttaaatata      3240
     atgcttatct agctaaacta gaaagaatta ccagacgcat ggcccttaga attacaatgg      3300
     cttataggac ttcaccaact aaggctctac tggttatcgc aggagtgccg ccggtacaat      3360
     taaaggtgca agaacgctgc aaaatatacc aaaaaaatga aaaagagcag gctcaaaaag      3420
     aacttttaca aaaatggcag gaaagttgga atacatacga aggatggaca aaagttttca      3480
     taaaaaatat agagctgtgg attaatagga aggtagtagg cgttgaccac cacgtgacac      3540
     aggcactcac gggccatggg gccttcggga ggtatctaca aagaataaaa aaacaggacc      3600
     atgctaggtg ccagtattgc gactgggaaa ccgatgacgc aagacacacg atcttccaat      3660
     gcgttcgttg ggaaaatgtt agactagaag ccgaaacacg ctgcggtaga ataataaacg      3720
     aggaaacaat aagcacttta ttaactggag aagaagacac aagtgacgct gtattcaata      3780
     tgattagaag tattatgaga gagaaaaaca aagatggagt aaaaaataaa caaatagaat      3840
     agaagactag gcaaaggcta aagtagacac tatctgggaa gaaatgccga aaggcgatac      3900
     cccgggtggc gactgcggaa ataaacagag gaaatggggt tttagtgggt tagaatccca      3960
     cactccccgg atcactggaa catcaaagat ccgggggtta ggctatgagc tttccccaaa      4020
     acctcgttaa aaaaaaaaaa aaaaaaaaaa a                                     4051
//
ID   SARTTc8     repbase;    DNA;    INV; 5404 BP.
XX
AC   .
XX
DT   11-JAN-2013 (Rel. 19.03, Created)
DT   11-JAN-2013 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Tribolium castaneum.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; SART; SARTTc8.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-5404
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 775-775 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   >99% identical to consensus. It follows (TCAGG)nTC. Possibly
CC   includes an deletion inside of ORF1.
XX
FH   Key           Location/Qualifiers
FT   CDS           2312..5194
FT                 /product="SARTTc8_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MISFLQLNANRSRRAHDILHKTASETNSDIVLLSEPN
FT                 LKVVDNPRYLHDIRKDTAINILSKHVQLKCSGSGSGFTWISTSVVTVYSCY
FT                 ISPNSTIGEFINVLESLTTSMQTQSDPVIVTGDFNAKSTEWGMPYSDRRGS
FT                 LLADWIAQHDLTAANKHDEYTFQRGLAQSIIDLTLVPTYLVHKLSNWRTLD
FT                 AESLSDHKYIAFTWDDNAGTTCQTSGYTGWNLKRLDKDKLLSKLREATCES
FT                 TPASLNKILQRACNAAMPKKRCFRNRRPVYWWNEKIANLRKNALKFRRTIT
FT                 RLRSKRQVSVMLIDGTTSKLKQAQKMLRDEIQKAKSEKWKELCLSLEDDLW
FT                 GNGYQTVMKRTGQACPFKLPREQLNNIVAILFPLHADVDWIKENCKPIPDF
FT                 THDELRDAARRLKSGKAPGPDGVPGEIIKIMVEERPDTLLEIFNRCAKDST
FT                 FPDCWKIARLILLPKPGKLNRTANAFRPICILDASGKLYEYLLYKRLDDEI
FT                 EQRGGLSPFQFGFRKGVSTVHAIDEVIRTAEQEKLPSYRHRKTCLMITFDV
FT                 QNAFNSASWQIILEELKQKGISPSLINTIRDYLNNRKIITDYGDTVKVNSG
FT                 VPQGSVLAALLWNVMYDSVLRIATSENVKLIGYADDLAVIITCKQIDDLEE
FT                 TANHVVAQIADWMETKRLKLAPEKTECILLRCKRKPPAVKINVLGTEISPK
FT                 SSIKYLGVWIDQNCGFKQHIQQTAIKVEKTITALSSVMPNIGGPSSSKRRM
FT                 LSSVAHSAMLYGAPIWHNAMTIESYKKKLFSLQRRLAIRIASAYRTAPTDA
FT                 IMVISGIPPVHLQATERKDIFYGMSRSDARDKLINKWQREWTGRKCWTSKL
FT                 IPDLRVWLQRDHGTLNYYLTQFLTGHGNFRSYLSGIQRCPDDECIYCGERD
FT                 SAEHILYCPRWKDFRDDVGVHLSRENIIGVMLESPENWAKISGLLTEILKQ
FT                 KDKEEL"
FT   CDS           join(508..2010,1908..2312)
FT                 /product="SARTTc8_1p"
FT                 /translation="MNINSNPKEGEPTTITEGRESRARNISTTTTEEVSGR
FT                 RASTGREAYMGIGNSSQSFDAGDRFLLLDVSGSWSSPKSTQGELPKTPKRS
FT                 LKTESPKKEEGRNLGYDTVSVFSSPEEITDERQPKRKREDTPKSTAQQAGT
FT                 NDEWKKLCKAVEATHREMERLTSEVSKNPNTKREIKKSITVLKGLLHRVTV
FT                 DNLGKLLKDNQTDTYVGDDIKSEKSLQSNETGTQTEPSMVTIGTQTEDEPS
FT                 CACQRDIALIRRWEDQNTEEIRQAIDQQVTGPELENLFSRSWPEKAYTTTS
FT                 TKSGSLFSSSTDSDLVIIGDTKDLTNKSVFRKVASRVPHLLALAKENKIKP
FT                 GKVVHISCQSEIQVEGDDLEKEHLGQNKRSTFLATVEESTPSYLEAATNLN
FT                 KASMKASSKLLAVAILVDDPKSRENIRKALEYSLKDLKATIYIPEDPTKNR
FT                 SSRRTANHERVAQEGIILTANEGKTYADLLKEVKSGLSKSQQEDNVIGCRL
FT                 SSLQKGKNLRRPFKRSQIWAFQVSTGRQCNRVSSIQSTKVTADALVQSKEL
FT                 RIGLTLCQIRPWQPENKCFRCWETGHRADTCKGPDRSKLCLKCGKNDHKAA
FT                 ECKNEMFCPICNVAGHRANAGNCPLRKKSSGQTTTNTK"
XX
SQ   Sequence 5404 BP; 1792 A; 1273 C; 1261 G; 1078 T; 0 other;
     tccctcccaa ggagccgtga gaccttgtcg ttggtgggag ggcttaagta cttgcaacga        60
     atctgcgggc aatgctggcg ggagtcacgg aagagactcc tggcagggac acccatgcca       120
     gtaaggccaa agaggagcaa ggaaaaacaa aggacggctc aaacctcagg acccacctaa       180
     gagattaggt ggtacgggaa ctggcaaacc cggggtagat ccgagctaca ggaggtggag       240
     cgtagcctgc ctgcttaaaa ccgtaattgc ggcccgaatt caacaacctt tgctgagcgc       300
     ggcaggggta cgttttcggg gacccgcaac cgggaggctt gccttaaacg gccggcttgc       360
     gaggagaaaa acctctataa taaaccgaga gatgctcgta aaaacctgtg gggcaccagg       420
     cgcaccccac agtaggaagc ccttctctcg gtataggccc actgctggga gacgacgaat       480
     acttggtcct aattcgtggg atattagatg aatatcaact ccaaccctaa agaaggtgag       540
     cctacaacca taactgaagg tcgcgaaagt agagcgcgta acatctctac aacgacgacg       600
     gaggaagtta gcggtcgcag agccagcact ggacgagaag catatatggg tattgggaat       660
     agctcacaaa gctttgacgc tggagacagg tttctactgc tggatgtttc tggatcttgg       720
     agcagcccga aatctacaca gggggaacta ccgaaaactc caaaaagatc attgaagaca       780
     gagagcccga agaaagaaga aggaagaaac ttgggatacg acaccgtaag tgtatttagc       840
     tctccagaag agattacaga tgaaaggcaa cccaagagaa aacgcgagga cacgcctaaa       900
     agcaccgctc agcaagcggg aacaaacgac gaatggaaga aattatgcaa agctgtcgag       960
     gcaacgcacc gagaaatgga gaggcttaca agtgaagtct caaagaaccc aaacaccaag      1020
     agagaaataa agaagtccat aacagtatta aaagggctcc ttcaccgggt aactgttgat      1080
     aaccttggta agctgctgaa agataaccaa acggacacct atgtggggga cgatataaaa      1140
     tctgaaaagt cactccaaag caatgaaaca ggaacccaga ctgaaccatc tatggttacc      1200
     atcggcactc aaacggaaga cgaaccatct tgtgcatgtc aacgagatat tgccctaatc      1260
     agaagatggg aagaccaaaa cacggaagaa atcagacaag ctatcgacca acaagttact      1320
     gggcctgaac tagagaactt attctctcgt tcctggccag aaaaagcata cacgaccact      1380
     agtacaaaga gtggaagctt attctcttcg agtaccgact cagacttggt aataataggg      1440
     gatacaaaag acctgacaaa caaaagcgtt ttccggaaag ttgcaagcag ggtcccacac      1500
     ctcttagccc tcgctaaaga gaacaaaatt aagccaggga aagtcgtaca tatctcgtgc      1560
     caaagtgaaa tccaggtaga gggagacgac ttagaaaagg aacatctcgg gcagaacaag      1620
     cggtccacat ttttggcaac tgtagaagag tcaactccta gctatcttga agcagcgact      1680
     aatctaaaca aagcttccat gaaggcctcc tccaaactac tggctgtggc gatcctagtg      1740
     gacgacccta aatcaagaga aaacatcaga aaggctttag agtactctct taaagacttg      1800
     aaggccacaa tatacattcc tgaagaccca accaagaata gatcctccag aagaaccgcc      1860
     aaccatgaac gagtggctca agaaggtata attctcacag ctaatgaggg aaaaacctac      1920
     gccgaccttt taaaagaagt caaatctggg ctttccaagt ctcaacagga agacaatgta      1980
     atagggtgtc gtctatccag tctacaaaag taacggctga cgcactggtt caaagcaagg      2040
     aactccgaat cggattaacc ctctgtcaaa tccgaccctg gcaaccagaa aacaagtgtt      2100
     ttagatgctg ggagacagga catagggcgg acacctgtaa aggccctgac cgctcaaaac      2160
     tgtgtctaaa gtgcggcaaa aatgatcaca aagctgccga atgcaaaaat gaaatgttct      2220
     gtccaatttg caatgttgct ggacatcgtg caaacgcagg aaactgcccc cttaggaaaa      2280
     aatctagcgg gcagactact actaatacaa aatgatcagt tttcttcagt taaatgcgaa      2340
     ccggagcaga agagcccacg acattctgca caaaaccgcc tctgagacca actccgacat      2400
     cgttctacta agtgaaccaa acctgaaggt tgtcgataac ccaagatacc tacacgacat      2460
     tcgaaaagat accgcaatta acatcctttc caagcatgta caacttaaat gctcagggag      2520
     cgggtcaggg ttcacttgga tctcgacaag tgtagtcacc gtgtacagtt gctatatctc      2580
     ccccaactct acaatcgggg agtttattaa cgtgcttgag agtctaacca cctcaatgca      2640
     aacgcagtca gacccggtaa tcgtaaccgg agacttcaac gccaaatcca ccgaatgggg      2700
     tatgccatac agtgataggc gaggatctct cctggccgat tggatagcac agcacgacct      2760
     aacagcggct aataaacatg atgagtacac cttccaaaga ggactagccc aatctattat      2820
     tgacctaacg ctagttccaa cttatctagt tcataagttg agcaattgga gaacccttga      2880
     tgccgaatcg ttaagcgacc ataaatatat tgcgtttacg tgggacgata atgcgggaac      2940
     gacctgccaa acctcaggtt atacgggctg gaatctaaaa cgtttagaca aagataagct      3000
     actgtccaaa ctgagagaag caacctgcga atcaacacca gcgagtctaa ataagatcct      3060
     acagagagcc tgcaacgccg ctatgccaaa aaaaagatgt ttccgaaatc gaagacccgt      3120
     ctactggtgg aacgaaaaaa tagccaactt gcggaaaaat gctctgaagt tccgtcgcac      3180
     cataactcga ctccgatcta aaagacaagt ctcagtgatg ttaatcgatg gaactacttc      3240
     caaactcaaa caagcacaga agatgctacg agacgaaata cagaaagcaa aatctgagaa      3300
     atggaaggag ttgtgtctat cgctcgaaga cgacctttgg ggaaacggtt atcagacagt      3360
     aatgaaaaga acaggccagg cttgcccttt caagctgccg agagagcaac tgaacaacat      3420
     tgtagccata ctgtttccat tacacgccga tgttgactgg atcaaagaaa actgcaaacc      3480
     gatccctgat tttacccacg atgagctgcg ggatgccgcc agaagactca aatccggcaa      3540
     agcaccaggt ccagatgggg tccctggaga aatcatcaag atcatggtag aagaacgccc      3600
     ggatacgctg cttgaaatct ttaacaggtg cgctaaagac tccacattcc cggactgctg      3660
     gaagatcgca cgtctgattc tcctgccaaa accgggcaaa ctaaacagaa cagctaatgc      3720
     attccgaccg atctgcatcc tagatgcgtc aggaaagcta tatgagtacc tactgtacaa      3780
     gagattagac gacgaaattg agcaacgcgg agggctctca ccgtttcagt ttggtttcag      3840
     aaagggcgtc tcaaccgttc atgcgattga tgaggttata cggacagcgg aacaggaaaa      3900
     gctaccttcc tataggcata gaaagacgtg ccttatgatc acttttgatg tccaaaacgc      3960
     ctttaattca gcgtcttggc agataatttt agaagagctg aaacagaagg gaatatcacc      4020
     gagcctaata aatactatta gagattacct caacaacagg aaaatcatta cagactacgg      4080
     agacacggtc aaagtgaaca gcggagttcc ccaaggatct gtccttgccg ccctactttg      4140
     gaacgtaatg tatgacagtg tccttcgcat agcaacgtcg gaaaatgtca aacttatagg      4200
     atacgcagat gacctggctg ttattatcac ctgtaagcag atagacgact tggaagaaac      4260
     agcaaatcat gtagtagcgc agatagcaga ctggatggag accaagcgct taaaactagc      4320
     ccccgagaaa actgaatgca tactccttag atgcaaacgc aaacctccgg cagttaaaat      4380
     taacgtgtta ggaacagaga tcagcccaaa aagttctata aaatatctag gggtatggat      4440
     agatcagaac tgcggtttta aacaacacat acaacaaacc gcaattaaag ttgaaaagac      4500
     aattacagcc ttatcatcag taatgcccaa cataggcgga ccaagttcct caaagcgaag      4560
     gatgctgtca tccgtcgccc actcggccat gttatacggc gcacctatat ggcataacgc      4620
     catgactata gagtcctaca aaaaaaaact attttcacta cagcgaagac tggccattag      4680
     aatagcctca gcatacagaa ccgctccgac agatgcaatc atggtcataa gcggaatccc      4740
     cccggttcac cttcaagcga cagaacgaaa agacatcttt tacgggatga gcagatcgga      4800
     cgccagagac aaactcatca acaaatggca acgagagtgg actggtcgga aatgctggac      4860
     ctctaaactc attccagact tgcgggtatg gctccaaaga gatcatggaa cccttaacta      4920
     ttacctgacg cagtttttaa cgggccacgg aaactttcga tcatatctta gcggaataca      4980
     aagatgccct gacgatgagt gcatctactg cggggaacgt gactcggcag aacatatcct      5040
     atactgccca cgctggaaag acttcagaga cgacgttgga gtacatctgt caagagaaaa      5100
     cattatcggg gtaatgctgg aatccccgga aaactgggct aaaataagtg gactgctaac      5160
     agaaatcctt aagcagaaag acaaagaaga actgtagtag aaggaatccc acggcccacc      5220
     cgaagtaatg ccgagaggcg gttccgggtg gggctaaccg tgaagagagg gaagggtttt      5280
     agtcggtcga gctgggatcc ggtggtcgct caacccgaca ctacccggag ggttgaacat      5340
     cttcctccgg gtgtctgtcc agcagatttc ctaatcctct taaaaaaaaa aaaaaaaaaa      5400
     aaaa                                                                   5404
//
ID   SAR_DM      repbase;    DNA;    INV; 1472 BP.
XX
AC   X62939;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   15-APR-2009 (Rel. 14.05, Last updated, Version 2)
XX
DE   D.melanogaster untranscribed DNA repeat.
XX
KW   SAT; Satellite; Simple Repeat; Repetitive sequence;
KW   satellite related repeats; SAR_DM.
XX
NM   SAR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1472
RA   Jackson R.F.;
RT   "SAR_DM.";
RL   Direct Submission to Genbank (31-OCT-1991)F.R. Jackson, Worcester
RL   Foundation for Exp Biology, 222 Maple Avenue Schrewsbury, MA
RL   10545, USA.
XX
RN   [2]
RP   1-1472
RA   DiBartolomeis M.S., Tartof D.K. and Jackson R.F.;
RT   "A superfamily of Drosophila satellite related (SAR_DM) DNA
RT   repeats restricted to the X chromosome euchromatin.";
RL   Nucleic Acids Res 20, 1113-1116 (1992).
XX
DR   GenBank; X62939; Positions       1    1472.
XX
SQ   Sequence 1472 BP; 507 A; 240 C; 240 G; 485 T; 0 other;
     gacaagaaca aaaccgcagc atccttgaag cgtccttccc ttcctttcac ctcgccccgt        60
     ccaccgccca ctcacttttc cccactttcc ggcattttaa aaactgcaag ctgcatgtca       120
     ctaatatctc tgccagcgtt agagcgagac gacctaagca acacttgaag aaataactta       180
     atcataatat tagcaaagaa cttagaacga ctttacgcaa aaatttaata ttcacgaatg       240
     ctttttcttc acatattggc caaaaatggt catatggcta aaagagtaat agttttgcca       300
     agcttataac tactgctaac gatctttatt acaatttttc ggattcaaaa acaaaaataa       360
     attttgataa gtttttgcat tttttttttt aaggggaaaa ttttcaaaaa ctgacgaaaa       420
     aataaaactc ctatatttta acacagtttg attggaaatt ttaatgcgag ctcaacgcgg       480
     tatgacattc cacattcggg caattatttt aaaagttgtg ccgaaaaaac gtatttttta       540
     tgaccgaatt ttggaaaaac gggttttgtc aaaaacgtga ttttactaac ggtattttcg       600
     ccataacatc gctaaaaaat gtcatataga tgaaagaata actgctttga gcagctattt       660
     agcagtgcta acgatcccta tcacttttgg aaggatttag ggaaattaat ttttagggtc       720
     aattttcgca ttttttgtaa ggagtaacat catgaaaatt ttcaaaaaat ggataaaaaa       780
     tagaattcca attcggggat acagttggat tgggaatttt attacgagct caacgcggta       840
     tgacattcca tattcaggca tttattttta aagttgtgcc gaaaaaacgg atttttttat       900
     gaccgaattt tggaaaaacg ggttttgtca aaaacgtgat tttactaacg gtattttcgc       960
     cataacatcg ctaaaaaaat gtcatataga tgaaagaata actgctttga gcagctattt      1020
     agcagtgcta acgatcccta tcacttttgg aaggatttag ggaaattaat ttttcgggtc      1080
     aattttcgca ttttttgtaa ggggtaacat catgaaaatt ttcaaaaaat ggctaaaaaa      1140
     tagaattcaa ttcggggtta cagttggatt gggaatttta atgcgaactc aacgatgtat      1200
     gtcattttat attcagacaa ttattttaaa agttgtcgcc aaaaaactgt tttttataac      1260
     caaaatttcg aaaaacggct ttatgcaata aataaaaaaa tttccatcca tattaattat      1320
     aattattaat aataattact tcgcctataa tgatcaaaaa agcaactgtt atggatagct      1380
     aatgctaaca atgggtatta ctttttgacg aatttattgg tgtttcggta tgcaacaaca      1440
     atttaagccc gtttttttaa agtgagctta at                                    1472
//
ID   SAT-1_AAe   repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Satellite sequence: consensus.
XX
KW   SAT; Satellite; Simple Repeat; nonautonomous; MSAT; SAT-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-152
RA   Kojima K.K. and Jurka J.;
RT   "Tandemly repeated DNA from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1456-1456 (2011).
XX
DR   [1] (Consensus)
XX
CC   Tandem arrays include units corresponding to sequences 1-152,
CC   1-114, or 39-114.
XX
SQ   Sequence 152 BP; 24 A; 34 C; 51 G; 43 T; 0 other;
     agttgtgttt gatccttcga ccttgacgct tgctcctgcg ggggcgggcg atgagggcag        60
     gatcaaacat gtcgcgcgtc ggtcgagtga agtggaaaag tggcgtgatc cgttagttgt       120
     gtttgatcct tcgaccttga cgcttgctcc tg                                     152
//
ID   SAT-1_CFl   repbase;    DNA;    INV; 42 BP.
XX
AC   .
XX
DT   28-NOV-2011 (Rel. 19.04, Created)
DT   28-NOV-2011 (Rel. 19.04, Last updated, Version 1)
XX
DE   Satellite from the Florida carpenter ant genome.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-42
RA   Kojima K.K. and Jurka J.;
RT   "Satellites from the Florida carpenter ant genome.";
RL   Repbase Reports 14(4), 1046-1046 (2014).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 42 BP; 12 A; 9 C; 13 G; 8 T; 0 other;
     gatttgtgag aggcgagggg actcacgtta ataaagcacc cc                           42
//
ID   SAT-1_CQ    repbase;    DNA;    INV; 985 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   Satellite-type sequence from the southern house mosquito:
DE   consensus.
XX
KW   SAT; Satellite; Simple Repeat; nonautonomous; SAT-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-985
RA   Kojima K.K. and Jurka J.;
RT   "Tandemly repeated DNA from the southern house mosquito.";
RL   Repbase Reports 11(1), 630-630 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity. Highly repetitive in tandem.
XX
SQ   Sequence 985 BP; 246 A; 190 C; 235 G; 314 T; 0 other;
     attcgaagca cgatgaaaaa tgctttcgaa tgaagtataa tagttgtggg ttttttagcc        60
     ggatgggcga accagcatgt gataatgcat tggtatcgtc aaaaatagca gtttagcgca       120
     gatattaacg actaagctta ataattcgtc gagatatgta tctcagtgga ttgggttttg       180
     aaagagcttt ccaaaaatgt gcaacatgcc gacatttcgg ttaattttgg cctcgtttta       240
     gtcgatttga aggtggctga atgcaaacag ttttcttaaa gtggctgtaa ctttggcaaa       300
     ttccaatgga tttttgtccc gtttcagccc gggaaggagg acattccaga ctacctagtt       360
     atgcaaaaat gaagcaattt tgaaaaattt tcatcgtttt ttgtttttcg gttttaggtt       420
     tgcaaatcgt ttttcttaaa tatcttttga caggaaaggg ctacggggaa gattttcaat       480
     agcgacttat cggaagctaa gagggatcga atgcaaccgg aagtgtccaa atccgttcag       540
     ccagttccga gaaatcgcag tgacattttt tggccaattt tcaagtgatt ttatatggca       600
     ttcctcggag aggaagccaa aactcgggtt cccccaaaat aaaatagtct gccgtaaacc       660
     aattgcgacc agttggtcgc gttcttgttg cactcttctc agcaagtcga gtcggcgtag       720
     tgagctaggg cgcgccccag agttttattt ttgcctgtgg gttcgaatct cgttctctcc       780
     cgctcgctct ctgagctgat ttgttttttt tttctccctg cgcgttgtcg agcaatcttc       840
     cggccggaag gtgctcgact tgagttttcg agcaatcttc cggccgctcg acttttgagg       900
     ctattttgga cctgatttga ggtcgggtga aatatttgca tgctggacgc gattcacaaa       960
     gggaatttta tttcctaaga tgaca                                             985
//
ID   SAT-1_DAzt  repbase;    DNA;    INV; 1981 BP.
XX
AC   .
XX
DT   18-OCT-2019 (Rel. 25.03, Created)
DT   18-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Satellite sequence from the Drosophila azteca genome - consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-1981
RA   Kojima K.K.;
RT   "Satellite sequences from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 888-888 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. It originated from a Jockey non-LTR
CC   retrotransposon and still retains the protein coding ability of
CC   reverse transcriptase.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1568
FT                 /product="SAT-1_DAzt_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="SLLAGFSKILERLILNRLYEVQAVKRAIPNHQFGFRS
FT                 EHSADQQLGRVTQFILNGHENQNHVSAVFMDIQEAFDRVWHQGLLYKAKQL
FT                 VPASLFTLLTSYLKNRNFKVVCSNTSSRRRSIVAGVPQGSVLGPFLYNLYT
FT                 ADMPQPPAMAASNKTQMLATYADDTVYLVSARQPTEVKRSMERLLTSFLEW
FT                 TKKWGITVNQQKTKHVLFTLSPPQQMTADSTPNLAGRPIEDQSSYQYLGVK
FT                 LDRKLNFVSHIAATVGKAKNRIRKLDWLIGRNSKLPIRTKMLLYKQMVEPI
FT                 WQYAMPVWGPLTSDIQISRLQVVQNTVLRGIVDAPRYTRNKDILANLQVQT
FT                 VEESCNESCRRFYERLSHHTNWLAINMTHYPYVPRRLARSRQRYATMMTQH
FT                 NLSSIRNQVEVQRRALMARRESYQANPFSTQNSSSRGSVAITTPNDDNRET
FT                 AATTSSKIQRQQEGANGLRSNSNIVGGHSSLELFRHAHGTNSAKSTLTCLS
FT                 PEAELKCSESPRDGWCGCSHNPNLST"
XX
SQ   Sequence 1981 BP; 650 A; 494 C; 430 G; 407 T; 0 other;
     tcagccttct ggctggtttt tccaaaattc tggagcggct catcctcaat agattatatg        60
     aagtgcaagc ggtcaagcga gctatcccaa accaccagtt cggcttcagg tctgagcact       120
     ctgctgatca acaactaggt cgcgtaacgc aattcatcct gaatggacac gaaaaccaaa       180
     accacgtatc ggcggtgttc atggacattc aggaggcctt tgacagagtg tggcatcaag       240
     gactcctgta caaggccaaa cagctggttc ctgcttcact gttcacacta ctaaccagct       300
     acctcaagaa cagaaatttc aaagtcgtct gcagcaacac atcgtccaga agaagaagca       360
     ttgtagccgg agtaccgcaa ggcagcgtcc tcggcccatt cctctacaac ttatatactg       420
     cagacatgcc gcaacctcct gcaatggcag catccaacaa aacacaaatg ctggccactt       480
     atgcagatga cactgtatac ctggtgtctg cacggcagcc aaccgaggtt aaacgctcaa       540
     tggagaggct cctgaccagt ttcttagaat ggacgaagaa atggggaatc accgtaaacc       600
     agcaaaaaac gaagcatgtc ctcttcactc tatcaccacc gcagcagatg actgcagact       660
     caacaccaaa cctagcaggt aggccaattg aagaccagtc gtcttatcaa taccttgggg       720
     ttaaactaga caggaaacta aacttcgtga gccatatcgc agccacagtt ggaaaagcca       780
     aaaaccggat ccggaaactt gactggttaa ttggcagaaa tagtaagctt cccatccgaa       840
     ccaagatgct gctctacaag caaatggtcg aacccatatg gcagtacgca atgcctgtct       900
     ggggtccgct cacatctgat atacaaatta gcagactgca agtagtccag aatacggtgc       960
     tgagaggaat agttgatgcc ccacgatata cacgaaacaa ggacatactt gcaaacctgc      1020
     aggttcaaac tgttgaggaa tcatgcaacg agtcatgcag gaggttctac gaaaggttat      1080
     ctcatcacac taattggcta gccatcaaca tgactcacta cccatacgtg ccacgccggt      1140
     tagctcgatc gaggcagcga tacgccacaa tgatgacaca gcacaaccta agcagcatca      1200
     ggaaccaggt cgaagtccag cggagggctc tcatggctcg ccgcgaaagt taccaggcaa      1260
     accccttctc cacgcaaaac tcatccagca gaggcagcgt tgcaattact acgcccaatg      1320
     atgacaacag agagacggcg gcaacaacat catcaaagat tcaacgccag caagagggag      1380
     caaacggact gcggtcaaac tccaatatag ttggaggaca tagcagcctc gagttgttcc      1440
     gtcatgcgca tggcacaaat tctgcaaaaa gcacgctcac ttgcctaagc ccagaagctg      1500
     agctgaaatg cagcgaatcg cctagggatg gctggtgcgg atgctcgcat aatcccaact      1560
     tgtcaacata atccttttcc gatccttgaa gcagctgaaa agagaaaaaa aagaataagt      1620
     tagtaaatta gaaaactgaa aaaaaaaaat gtaaacaaac agcagccata agctcatagt      1680
     tatcgataag agttatctgt aaaatagggt attttaaaaa aataccgaag ccaatgttct      1740
     gccttaagtt gccattctag catgtagaag tgcatcagct gcactacatt tgacatgtag      1800
     aagcaatagg tgtaaataat tttgaaaata tgcaactgac atgtataaaa caaaataaaa      1860
     agaaagctcg tagatgtgaa accccaccgc caccccgcga aagcgaggtg cgtctggcca      1920
     ggggaatcta atctactgtg cgccagttac tgttctactt ggaaaaaaaa aacaaaaaaa      1980
     a                                                                      1981
//
ID   SAT-1_DBi   repbase;    DNA;    INV; 224 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Satellite repeats from the Drosophila biarmipes genome.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-224
RA   Kojima K.K. and Jurka J.;
RT   "Satellites from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 998-998 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 224 BP; 78 A; 36 C; 43 G; 65 T; 2 other;
     agggtcaagt tttgttagag tataaatgca ctaatgtagg acttgcagag atggtacatt        60
     tcccaaaaaa gagaaagtct agagatttac acaacagaca gtatggtcaa amctttcttg       120
     atgcgaaaat ttgagttccc aagctttgac taagaatcca gttcatcatt ccagaacaaa       180
     acatattgat atacgctatc attttgtamg acaagttgtc tagg                        224
//
ID   SAT-1_DEl   repbase;    DNA;    INV; 1442 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   Satellite repeat from the Drosophila elegans genome: consensus.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1442
RA   Kojima K.K. and Jurka J.;
RT   "Satellite repeats from the Drosophila elegans genome.";
RL   Repbase Reports 12(4), 579-579 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. Similar to SAR_DM and XDMR.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1442 BP; 461 A; 219 C; 226 G; 534 T; 2 other;
     ttttgcaaaa atatgaaatc tgtccaaatt tctgactttt tgtaaggggg tacatcatma        60
     ttttttgcag aaatttgaaa atctgaaaaa attttagctg tgaatgccat tcgattggaa       120
     attttattac gaattcaacg gtgtatgaca ttccacattt tgaccattat ttcccagggt       180
     tttgacacaa aaaccaagtt tttaatgtgt tttttggggt ttttggcgat ttttcaaaca       240
     aaattatttc tgaagagtct ttttgttgta actttgccaa aataagaccc aaagtcaaaa       300
     gagttgctat tttgaacagc tggcaaccta cgccatccat ccccgatcga ttgaaaacaa       360
     ttaatttagt tttgacacaa aaaccgaatt ttgaaaaacg ttttttgaaa aatttattta       420
     tgtccaaatt tctgactttt ttgtaagggg gtacatcatc attttttgca gaaatttgaa       480
     aatctgaaaa aattttaact gtgaatgcca ttcgattgga aattttatta cgaattcaac       540
     ggtgtatgac attccacatt ttgaccatta tttcccaggg ttttgacaca aaaaccaagt       600
     ttttaatgtg ttttttggga tttttggcga tttttcaaac aaaattattt ctgaagagtc       660
     tttttgttgt aactttgcca aaataagacc caaagtcaaa agagttgcta ttttgaacag       720
     ctggcaacct ataccatcca tccctgatcg attgaaaaca attaatttag ttttgacaca       780
     aaaaccgaat tttgaaaaac gttttttgaa aaatttattt wtgtccaaat ttctgacttt       840
     tttgtaaggg ggtacatcat cattttttgc agaaatttga aaatctgaaa aaattttaac       900
     tgtgaatgcc attcgattgg aaattttatt acgaattcaa cggtgtatga cattccacat       960
     tttgaccatt atttcccagg gttttgacac aaaaaccaag tttttaatgt gttttttggg      1020
     atttttggcg atttttcaaa caaaattatt tctgaagagt ctttttgttg taactttgcc      1080
     aaaataagac ccaaagtcaa aagagttgct attttgaaca gctggcaacc tataccatcc      1140
     atccctgatc gattgaaaac aattaattta gttttgacac aaaaaccgaa ttttgaaaaa      1200
     cgttttttga aaaatttatt tatgtccaaa tttctgactt ttttgtaagg gggtacatca      1260
     tcattttttg cagaaatttg aaaatctgaa aaaattttaa ctgtgaatgc cattcgattg      1320
     gaaattttat tacgaattca acggtgtatg acattccaca ttttgaccat tatttcccag      1380
     ggttttgaca caaaaaccga gtttttaatg tgttttttgg gatttttggc gattttccaa      1440
     ac                                                                     1442
//
ID   Sat-1_DMel  repbase;    DNA;    INV; 918 BP.
XX
AC   .
XX
DT   06-AUG-2018 (Rel. 25.03, Created)
DT   06-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Satellite repeat from fruit fly, consensus.
XX
KW   Satellite; Simple Repeat; SAT-1_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-918
RA   Bao W.;
RT   "Satellite sequences from fruit fly.";
RL   Repbase Reports 20(3), 886-886 (2020).
XX
DR   [1] (Consensus)
XX
CC   Unit is 306-bp long.
XX
SQ   Sequence 918 BP; 303 A; 273 C; 147 G; 195 T; 0 other;
     ctgaatctac tagagacgtt ccaaccaccc ggccatttga ggcatctact cccagtccag        60
     catctctgga aacaactgtt ccatcagtca cttcagaaac cactacaaat gttccaatcg       120
     gttcaacagg tgggcaagtg acagaacaaa ctacatcttc tccgagcgaa gtcagaacta       180
     caatacgtgt tgaagaatct acacttcctt caaggtcaac ggatagaact actccatccg       240
     aaagtcctga gacacccaca acattacctt cagacttcac aactagacct cactcagaac       300
     aaacgactga atctactaga gacgttccaa ccacccggcc atttgaggca tctactccca       360
     gtccagcatc tctggaaaca actgttccat cagtcacttc agaaaccact acaaatgttc       420
     caatcggttc aacaggtggg caagtgacag aacaaactac atcttctccg agcgaagtca       480
     gaactacaat acgtgttgaa gaatctacac ttccttcaag gtcaacggat agaactactc       540
     catccgaaag tcctgagaca cccacaacat taccttcaga cttcacaact agacctcact       600
     cagaacaaac gactgaatct actagagacg ttccaaccac ccggccattt gaggcatcta       660
     ctcccagtcc agcatctctg gaaacaactg ttccatcagt cacttcagaa accactacaa       720
     atgttccaat cggttcaaca ggtgggcaag tgacagaaca aactacatct tctccgagcg       780
     aagtcagaac tacaatacgt gttgaagaat ctacacttcc ttcaaggtca acggatagaa       840
     ctactccatc cgaaagtcct gagacaccca caacattacc ttcagacttc acaactagac       900
     ctcactcaga acaaacga                                                     918
//
ID   SAT-1_DMo   repbase;    DNA;    INV; 267 BP.
XX
AC   .
XX
DT   14-OCT-2020 (Rel. 25.10, Created)
DT   14-OCT-2020 (Rel. 25.10, Last updated, Version 1)
XX
DE   Satellite sequence from Drosophila mojavensis, consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-1_DMo.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RP   1-267
RA   Bao W.;
RT   "Satellite sequences from the genome of Drosophila mojavensis.";
RL   Repbase Reports 20(10), 3254-3254 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to the consensus.
XX
SQ   Sequence 267 BP; 80 A; 42 C; 28 G; 117 T; 0 other;
     ttattgccga atactttaaa attttctgtt atgaaagcat caaaatattg aatcgatttg        60
     ctttttctga ttctatatca catgttgcaa taattactga attcattttt ctctattgca       120
     atacttacta gtttattgcc gaatacttta aaattttctg ttatgaaagc atcaaaatat       180
     tgaatcgatt tgctttttct gattctccat cacatgttgc aataattact gaattcattt       240
     ttctctattg caatacttac tagttta                                           267
//
ID   SAT-1_DSim  repbase;    DNA;    INV; 362 BP.
XX
AC   .
XX
DT   30-OCT-2011 (Rel. 17.08, Created)
DT   30-OCT-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   Satellite-type element: consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-1_DSim.
XX
OS   Drosophila simulans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-362
RA   Jurka J.;
RT   "DNA satellites from Drosophila.";
RL   Repbase Reports 12(8), 1369-1369 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus.
XX
SQ   Sequence 362 BP; 135 A; 56 C; 50 G; 121 T; 0 other;
     aatggtcaga gagcaaaaag gagtaccatt ttgtactcct tacaaccaat actaacaacc        60
     cctttcactt ttaaactgat tttgtaaaat taatttttgg ccaaattttc gaattttttg       120
     taaggggtac catcatcaaa atttgcaaaa aattgaaacc tcctagaatt ccaaaacttg       180
     aatgcaattc gattgggatt taagaaacaa actcaacgag gtatgacatt ccatatttgg       240
     gtaattattt cgaatgtttt gatcaaaata ccaaatattt ttttcacaaa aaatctggga       300
     aaatattttt ggcaaaaaaa tgaaatttca aattggcttt tttggctata acttgactaa       360
     aa                                                                      362
//
ID   Sat-1_LMi   repbase;    DNA;    INV; 753 BP.
XX
AC   .
XX
DT   23-MAY-2014 (Rel. 19.11, Created)
DT   23-MAY-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   Simple repeats, consensus.
XX
KW   Satellite; Simple Repeat; Nonautonomous; Sat-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-753
RA   Bao W. and Jurka J.;
RT   "Simple repeats from the migratory locust.";
RL   Repbase Reports 14(11), 3187-3187 (2014).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 753 BP; 0 A; 360 C; 239 G; 154 T; 0 other;
     gcctcctcgc cgccgtctcc ggcgctccgt cggtccgtcg gtcggcctcc tcgccgccgt        60
     ctccggcgct ccgtcggtcc gtcggtcggc ctcctcgccg ccgtctccgg cgctccgtcg       120
     gtccgtcggt cggcctcctc gccgccgtct ccggcgctcc gtcggtccgt cggtcggcct       180
     cctcgccgcc gtctccggcg ctccgtcggt ccgtcggtcg gcctcctcgc cgccgtctcc       240
     ggcgctccgt cggtccgtcg gtcggcctcc tcgccgccgt ctccggcgct ccgtcggtcc       300
     gtcggtcggc ctcctcgccg ccgtctccgg cgctccgtcg gtccgtcggt cggcctcctc       360
     gccgccgtct ccggcgctcc gtcggtccgt cggtcggcct cctcgccgcc gtctccggcg       420
     ctccgtcggt ccgtcggtcg gcctcctcgc cgccgtctcc ggcgctccgt cggtccgtcg       480
     gtcggcctcc tcgccgccgt ctccggcgct ccgtcggtcc gtcggtcggc ctcctcgccg       540
     ccgtctccgg cgctccgtcg gtccgtcggt cggcctcctc gccgccgtct ccggcgctcc       600
     gtcggtccgt cggtcggcct cctcgccgcc gtctccggcg ctccgtcggt ccgtcggtcg       660
     gcctcctcgc cgccgtctcc ggcgctccgt cggtccgtcg gtcggcctcc tcgccgccgt       720
     ctccggcgct ccgtcggtcc gtcggtcggc ctc                                    753
//
ID   SAT-1_NVi   repbase;    DNA;    INV; 166 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; SAT-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-166
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 799-799 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 166 BP; 51 A; 34 C; 33 G; 48 T; 0 other;
     ccgatatgaa ccgatgagcg gaacatgggt atagagggcg ctgaaagctg cccaaatcgt        60
     gttttcgcac cttatatctt ctaccacggc cagaataatt gcaatatccc tgtttttctt       120
     tcagaattta ttggaggaca catttaagaa taactaaaaa ttagtc                      166
//
ID   SAT-2_AAe   repbase;    DNA;    INV; 468 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Satellite-type sequence: consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-468
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1452-1452 (2011).
XX
DR   [1] (Consensus)
XX
CC   117-bp unit.
XX
SQ   Sequence 468 BP; 168 A; 120 C; 84 G; 96 T; 0 other;
     caaaatttga atttagcgca taacagtaat tccagattca tcccggtgcc ccaggagaat        60
     cgaaagtgac cacctaagcc ccgaggtgta caaaatgcat tcctgcacaa aaaactacaa       120
     aatttgaatt tagcgcataa cagtaattcc agattcatcc cggtgcccca ggagaatcga       180
     aagtgaccac ctaagccccg aggtgtacaa aatgcattcc tgcacaaaaa actacaaaat       240
     ttgaatttag cgcataacag taattccaga ttcatcccgg tgccccagga gaatcgaaag       300
     tgaccaccta agccccgagg tgtacaaaat gcattcctgc acaaaaaact acaaaatttg       360
     aatttagcgc ataacagtaa ttccagattc atcccggtgc cccaggagaa tcgaaagtga       420
     ccacctaagc cccgaggtgt acaaaatgca ttcctgcaca aaaaacta                    468
//
ID   SAT-2_DAzt  repbase;    DNA;    INV; 5630 BP.
XX
AC   .
XX
DT   23-OCT-2019 (Rel. 25.03, Created)
DT   23-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   Satellite sequence from the Drosophila azteca genome - consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-2_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-5630
RA   Kojima K.K.;
RT   "Satellite sequences from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 889-889 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus.
XX
SQ   Sequence 5630 BP; 1621 A; 1154 C; 1113 G; 1741 T; 1 other;
     tccgagcatt acgaatagta ccttcgtcaa aatgtcttct cttcaggtgt gtaagaatat        60
     ttttaatatt tataacaaaa aatgtattgt tggttgtttt ttggtcatta aaaaatcgta       120
     tatgtatgta tttgcaactc aactaacaaa ggtagtccgg caaaaagtaa atacaaatgg       180
     tttctatttt agactagcct agttttttaa acagcttcag ctgtctgttc ctgataagtt       240
     gatcacagaa aagcatgttt tgtttctaaa taaatcaaaa tcacatacat attgcatatg       300
     tttcattaag atttatttga aattatcccc tttttagagt tctatcgaac cgtattcttt       360
     aatgaaaaat cgaggtaagg tagcgaaaac atttgtcaaa atgccttcag gccaaatgaa       420
     tatacagagg tgttaataca tttaatacgg aatgaataat gtatggtatg aattcgccaa       480
     atccaattct ttatcgtttt gtatctaaaa caatgttacc ctatcgtaca atattgtgta       540
     attaaacagc tatggcaaag caaagacaaa atcaaacata tgtattttat ttggaaaaat       600
     tagtaaagta kaaagtagca gaaataaaaa atctcaatga aaattatatt gtggtcctga       660
     aaaggaccga tttgtagaaa attgatatgt gatatgcacc tcacgaagaa atatcaactt       720
     aagcacgctc gccacgaata cgtctggcca gttggatgtc cttgggcatg attgtgacac       780
     gcttggcgtg gatggcacac aagttggtat cttcgaagag accgaccaga taggcttcgc       840
     tagcttcctg gagtgccatt actgccgagc tctggaagcg caagtcagtt ttgaaatcct       900
     gagcgatttc acgaaccaaa cgctggaaag gcaatttgcg gatcagcagc tcggtactct       960
     tctggtagcg acggatttca cgcagggcaa cagtgccggg gcgataacga tgaggtttct      1020
     tcacgccacc ggttgctgga gcacttttgc gtgcagcctt ggtagccagt tgtttgcgtg      1080
     gcgcctttcc accagtcgat ttacgagcag tctgcttggt acgggccatt ttcactgttc      1140
     actattcact attcactttc aacgtttaaa ttcagaataa gcgatcaaaa ttctcgctgc      1200
     tagcttatat agcattcttc tgttggaggg ttgaaacgag agagcagccg aagcatgctg      1260
     tttcatttcc cgagccgagc gagatgcaca tatcattcgg tctcactcgt gttttggtgg      1320
     tgtttggtat aaatacaagc gataaacatt ttggtgccat tcgttccttg tgtctcgtgt      1380
     cgtaagtgaa aagtgaaaaa cacagtgaaa gaaaatgact ggtcgtggta aaggtggcaa      1440
     aggcttggga aagggaggcg ctaagcgtca tcgcaaggtt ctgcgtgata acatccaggg      1500
     tatcacgaag cccgctatcc gccgtttggc tcgtcgtggc ggtgtaaaac gcatttctgg      1560
     actcatctac gaggaaactc gtggagtgct gaaagtgttt ttggaaaacg ttatccgtga      1620
     tgccgtcacc tacaccgaac acgccaagag gaagacagtc acagccatgg atgtggttta      1680
     tgctctgaag agacaaggcc gcacgctgta cggcttcggc ggttaagaaa atttgtacag      1740
     tctgctgttc aaaagtaaac aataaacaat cggtcctttt caggaccaca aaagaatcaa      1800
     aaagagaggc atattttcaa attgtattgt attttaatat tatcaagtta aataaaagtc      1860
     aagtcgacag aaaaccaggt gcactgctcc catctaatac ttaatacgct acttaatatt      1920
     attatacata catagctgat gatgttatgt gctcaaaagg aagggaagca tgcattctgc      1980
     gcaccgttcg tttatcccat tatgtattta aatattctga taaatccgta aaatttgacg      2040
     aatttatcgt agaccggtgc tatacttttg gtaaaggaaa aaaaaggcgt aaagttcaca      2100
     aagtacattc gtatcaggta ggttgcattg catttcacgt aggtaaagaa aatatgtttt      2160
     ttttttcttt cgagctctat cgcttggtcc cagtccccca gacacgcata gaaacccaac      2220
     cttaaatttc atcatgtttt ccagatgcct cgaccgcaac tgtactttct tttaggccct      2280
     atcctattaa tagaaatctg cgtgttttat ttctactcta gaatgataat caattatgaa      2340
     aattctctca attctttagt catggtttgg tcgtcctgaa aaggacgttt tggtttatat      2400
     atgtacatat gtacaagaac gtaaattgtt ttttcccatt ggaacattta tgccttcttc      2460
     tcggtcttct tgggcagaag aacggcctgg atgttgggca acacaccacc ctgagcaatg      2520
     gtgacgcctg agagcagctt gttcaactcc tcatcgttgc ggatggccag ctgcagatgg      2580
     cgagggataa ttctcgtctt cttgttatca cgggcagcat ttccagccaa ctcaagaact      2640
     tcagcggcca agtattccat cacggcagcc aggtaaacag gagcgccggc accgacacgc      2700
     tccgcatagt tgcccttgcg aagtagacga tgaatacgac caacagggaa ctgaagaccg      2760
     gcacggttcg accgagactt tgcctttccc ttcactttgc cacctttacc acgaccagac      2820
     attgtagtag attcttgttt ttttcactat tcacacacga atgttgtgca aaccaaacct      2880
     acgctatatt tatacttttt ccgtctgcat gagcgttcaa ccaaggggtg tgtttttcgc      2940
     ctgctacaaa ctgtatgtta aacctgaaca gactgctcaa ataaaagttc atatagggca      3000
     ttgcgtttca taaattgtaa attgtggtat tgtggtactg tgaagtgaaa tagaatacaa      3060
     gtaaatagtg aaatgccgcc caagactagt ggaaaggcag ccaaaaaggc tggaaaggct      3120
     cagaagaaca tcaccaagaa tgacaagaag aagaagcgca agaggaagga gagctatgcc      3180
     atctatatct acaaagtcct gaagcaagtc catcctgaca ctggtatttc gtcgaaagcg      3240
     atgagcatca tgaacagctt tgtaaatgac atcttcgagc gcattgctgc cgaagcgtct      3300
     cgcttggctc attacaacaa gcgctcaacc atcaccagtc gggaaatcca aacggctgtg      3360
     cgtctactgc tgccgggaga gttggccaag cacgctgtta gtgagggaac caaggctgtc      3420
     accaagtaca ctagctccaa gtaaatttgg ttgctcatcg attctctgca gaaccttgca      3480
     aaacccaaaa aggccctttt cagggccaca aaattttctc ccaaagaaat tccattttca      3540
     atatgtataa ccaaacgaat aaaaatcaat ttaatatcaa aatctgtcaa attaatttct      3600
     tcgatatgca agaaaccata accataacca tacattcata tgtacatatg ttcatccaaa      3660
     tataaaaact taattcaatt gccgaccgac ccgacgacta ctatgctaag gtacagcgtc      3720
     tatgtaaacg cttttcaata cacatccgaa cgaataacga atttgattcg gttcagtcaa      3780
     aattcgtttt aagtttgaac tggatgctaa atatacatat aaacgtatct gtatctgtac      3840
     aaaagcatct gtaggctcga taatttccat ctcttttgat atagttttgt agccctgaaa      3900
     agggcttgtt taaatcaatt tcagatgcat ccatctaaaa tttcgaatgc gaccatacga      3960
     ccatgcgacc atgtacacac caacgtgcac actttcacaa tttacttctt ggccgccgtc      4020
     gtcttggctt tcggcttctt tacggtggcg ggagccactg gcttcttcgt tgtcttcttg      4080
     ggcttggcag acgccgctgc agctacagcc tttgcttttg gcttgggctt ggcctttggc      4140
     tttgcagggc tcgacttggc ctttgccgct gctggtttcg ccttcacggt tccagttttc      4200
     ttcgcatcct tagcctttgc cttctcagtt ttcttcttct cggcggtctt cttggtggcg      4260
     actgacttct ttacctttag cttcttgtca ccggctccgg ctgctttttt ggggcttgct      4320
     gtcttcttgg ctgctgccga tgccgatgcc gatgtcgatg acgccacctt cttactttta      4380
     attttcttct ccacagacgc aacctttggc ttgggctcct ttttggcgga agcagagagc      4440
     ttgaacgaac cagatgcacc ttttcccttt gtttggatca gctttccatt ggcaacagcc      4500
     gacttcaagt acttcttgat aaatggagcc aatttctggg catcgcattt gtattcggca      4560
     gtaatatatt tcttgattgc caaaagcgat gagccgccac gttccttcaa gctcttaatc      4620
     gaagcgtcaa ccatttgctg agttggggga tgcgttggtg gagctgtggg cttctttgcc      4680
     tttgtagtag cagcaccgga tccagatgcc ttcttagcgg ccaccttctt ctcagctggt      4740
     actggtggag cagccactgg agacgcggat gttgcaactg cagaatcaga cattattatt      4800
     cacaaaatta cacttttcaa tgaaaaaacg ttgttgccgg ctctcagcta aggtccctcg      4860
     ttcgaatgag aagcgagtag aagggcagta cgatgatgat tttagcattg gtgatttgtt      4920
     tcgaaaaagt ttcattgaac gtctgaatta tttctacttt tctatatata attattaaat      4980
     aatttaaata ttttttcatt gattcatatt cttaaatatt tcaaatatta ttgtacatca      5040
     tttattttat aaatatcatc cattatcgat ttttaatacc tgtgcaaact ttgacaacat      5100
     gatctccaac tcttatattt ggaattcaat tacattaata aataacaatt ttagtttatt      5160
     ttgttaaaca tatttttgaa aaataaaatt tgataaattt actttaagag gcattaaaca      5220
     tatattcaca tatcggttgg tatggtattt taaaatcgtt ttgaagataa cgctatcgag      5280
     tacaaaagta ccactttctg ggtatgttca gcattgaaat taggggtcaa aaaatataaa      5340
     tgtttaaaaa tatattattg ttacccattt ttcttaagga aatcaaaacg attttccatt      5400
     tagtattatt tctgatcaat ttttgcaaat ttttacccaa aattaacaaa ctttcttacc      5460
     cacatagcag taccaactaa gttggatctc aatgtaaaaa tcgaaataat ctattatacg      5520
     caaattttat tgtctacacc gatttataca aatcttaaaa acatatttcc tttacttttg      5580
     ttgaatattc ttaattattt gtatttttta acgaacggtc ttttattata                 5630
//
ID   Sat-2_DMel  repbase;    DNA;    INV; 873 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 25.03, Created)
DT   08-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Satellite repeat from fruit fly, consensus.
XX
KW   Satellite; Simple Repeat; SAT-2_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-873
RA   Bao W.;
RT   "Satellite sequences from fruit fly.";
RL   Repbase Reports 20(3), 887-887 (2020).
XX
DR   [1] (Consensus)
XX
CC   Unit is 291-bp long.
XX
SQ   Sequence 873 BP; 354 A; 183 C; 144 G; 192 T; 0 other;
     ttctcaagaa gatacaagga caccatcaat ttctgtccca caatcaattg caacagccaa        60
     tagtttactt acaggttcga gtgcagaaga gcaaacagct caagaggaga catcggaact       120
     ttcaaaatcc ttacctcaat taacaacaga agagagcagt tcatttcaag aatccagtgc       180
     agaagaaaat caaatgacag aagtgccatg gacactatca acatcacttt ctcaatcaag       240
     ttcaaaaaca aagaatatat tttcgagtca gagtgtaaat gaagacaaaa cttctcaaga       300
     agatacaagg acaccatcaa tttctgtccc acaatcaatt gcaacagcca atagtttact       360
     tacaggttcg agtgcagaag agcaaacagc tcaagaggag acatcggaac tttcaaaatc       420
     cttacctcaa ttaacaacag aagagagcag ttcatttcaa gaatccagtg cagaagaaaa       480
     tcaaatgaca gaagtgccat ggacactatc aacatcactt tctcaatcaa gttcaaaaac       540
     aaagaatata ttttcgagtc agagtgtaaa tgaagacaaa acttctcaag aagatacaag       600
     gacaccatca atttctgtcc cacaatcaat tgcaacagcc aatagtttac ttacaggttc       660
     gagtgcagaa gagcaaacag ctcaagagga gacatcggaa ctttcaaaat ccttacctca       720
     attaacaaca gaagagagca gttcatttca agaatccagt gcagaagaaa atcaaatgac       780
     agaagtgcca tggacactat caacatcact ttctcaatca agttcaaaaa caaagaatat       840
     attttcgagt cagagtgtaa atgaagacaa aac                                    873
//
ID   SAT-2_NVi   repbase;    DNA;    INV; 151 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   20-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-151
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 800-800 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 151 BP; 31 A; 15 C; 51 G; 54 T; 0 other;
     ttcccagggt taggctagtt agcctgcttg tggtttggta ggggtggttt ctaggggtta        60
     agcgggttag gggtaggtat ttaggtgatt agttggctta tggtgtgtgg cttaattatt       120
     ttgagaaaaa ataaagcgat ttaactcgct g                                      151
//
ID   Sat-3B_DMel repbase;    DNA;    INV; 354 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 25.03, Created)
DT   21-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Satellite repeat from fruit fly, consensus.
XX
KW   Satellite; Simple Repeat; SAT-3B_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-354
RA   Bao W.;
RT   "Satellite sequences from fruit fly.";
RL   Repbase Reports 20(3), 885-885 (2020).
XX
DR   [1] (Consensus)
XX
CC   Unit is 120-bp long.
XX
SQ   Sequence 354 BP; 116 A; 123 C; 41 G; 74 T; 0 other;
     aacatcctca acatcggact ctactactac gtccactgca agtccatcag attctacgac        60
     aacttccact gaaagttcga cgtccacaac aaccgaaagt acttcaacat ccaccgcaat       120
     cccaacatcc tcaacatcgg actctactac tacgtccact gcaagtccat cagattctac       180
     gacaacttcc actgaaagtt cgacgtccac aacaaccgaa agtacttcaa catccactgc       240
     aatcccaaca tcctcaacat cggactctac tactacgtcc actgcaagtc catcagattc       300
     tacgacaact tccactgaaa gttcgacgtc cacaacaacc gaaagtactt caac             354
//
ID   SAT-3_AAe   repbase;    DNA;    INV; 181 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Satellite-type sequence: consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-181
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1453-1453 (2011).
XX
DR   [1] (Consensus)
XX
CC   181-bp unit.
XX
SQ   Sequence 181 BP; 53 A; 42 C; 28 G; 58 T; 0 other;
     atcaattcac tctgccaaaa ccttagcctc caacttttag tgggacccat gcttgaaaat        60
     ccaataaaat tataaaaatc cgtagatttc ctaaaaagtt gagtaaatat caacggattt       120
     tcgatttctt agcctcaatc gcttcgtctg gatcccagct aactttccgt gtgctgggtt       180
     t                                                                       181
//
ID   Sat-3_DMel  repbase;    DNA;    INV; 359 BP.
XX
AC   .
XX
DT   21-AUG-2018 (Rel. 25.03, Created)
DT   21-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   Satellite repeat from fruit fly, consensus.
XX
KW   Satellite; Simple Repeat; SAT-3_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-359
RA   Bao W.;
RT   "Satellite sequences from fruit fly.";
RL   Repbase Reports 20(3), 884-884 (2020).
XX
DR   [1] (Consensus)
XX
CC   Unit is 120-bp long.
XX
SQ   Sequence 359 BP; 129 A; 129 C; 50 G; 51 T; 0 other;
     caacatcctc cacaacggac tctacgacaa cgtccaccac aagttcatca acggagtcaa        60
     cgacaacatc cacggcaatt ccgacttcca caactagcga aagcacatca accgcaatac       120
     caacatcctc gacaacggac tctacgacaa cgtccaccac aagttcatca acggagtcaa       180
     cgacaacatc cacggcaatt ccgacttcca caactagcga aagcacatca accgcaatac       240
     caacatcctc gacaacggac tctacgacaa cgtccaccac aagttcatca acggagtcaa       300
     cgacaacatc cacggcaatt ccgacttcca caactagcga aagcacatca accgcaata        359
//
ID   SAT-3_NVi   repbase;    DNA;    INV; 152 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-152
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 801-801 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 152 BP; 48 A; 27 C; 27 G; 50 T; 0 other;
     acgcggtgga tcgatctgat ccttgcatag ttgtactcaa cagctcgagt tgcgttagat        60
     taccgtacgt ttatcatagg tttgatatta gtaaacaaag aaaccaactg attttgactc       120
     aatttataat aaaacgtgaa tatctctaat ct                                     152
//
ID   SAT-4_AAe   repbase;    DNA;    INV; 132 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Satellite-type sequence: consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-132
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1454-1454 (2011).
XX
DR   [1] (Consensus)
XX
CC   132-bp unit.
XX
SQ   Sequence 132 BP; 41 A; 26 C; 26 G; 39 T; 0 other;
     ccataaaata aagtctcagc cgtcgcctct caatttccca attgagggtc aatttgaggt        60
     ctatactaaa gatctgagag ggtttcgtca aaattttatc gtgcagtttt tgccaaacga       120
     cgaataaaga tg                                                           132
//
ID   SAT-4_NVi   repbase;    DNA;    INV; 102 BP.
XX
AC   .
XX
DT   07-MAY-2009 (Rel. 14.06, Created)
DT   07-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; SAT-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-102
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1160-1160 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 102 BP; 41 A; 28 C; 21 G; 12 T; 0 other;
     ggaaggcgag cgagagcgag cagcaaaact aaaaccaaaa tactcaaacc cacctacccc        60
     acggacagcg agttcaataa taaaatatct cggcacatcg ga                          102
//
ID   SAT-5_AAe   repbase;    DNA;    INV; 147 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   Satellite-type sequence: consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-147
RA   Jurka J.;
RT   "Tandemly repeated DNA from Aedes aegypti.";
RL   Repbase Reports 11(4), 1455-1455 (2011).
XX
DR   [1] (Consensus)
XX
CC   147-bp unit.
XX
SQ   Sequence 147 BP; 48 A; 30 C; 43 G; 26 T; 0 other;
     ggtagaagac atctctgaag tcaaggcaga agagaaacct gttgtcgaga aggcagtttc        60
     gccggttgaa gccaaggttg tcgaagctga gaaaccagca tcgccagtcg ctgaagccga       120
     gccaatcgaa gatgaaattg tcgaaaa                                           147
//
ID   SAT-5_NVi   repbase;    DNA;    INV; 110 BP.
XX
AC   .
XX
DT   08-MAY-2009 (Rel. 14.06, Created)
DT   08-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-5_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-110
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1161-1161 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 110 BP; 41 A; 31 C; 19 G; 19 T; 0 other;
     caaagcgctt aaacccagct accccatgct ccccgagctc aataatttat ttaatacaac        60
     acctcggcac atcgaaggaa ggcgagcgaa gcgagtataa aatcaaaaac                  110
//
ID   SAT-6_NVi   repbase;    DNA;    INV; 142 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.06, Created)
DT   13-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   Nasonia vitripennis satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; Nonautonomous; SAT-6_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-142
RA   Bao W. and Jurka J.;
RT   "Satellite repeats from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1162-1162 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 142 BP; 40 A; 33 C; 25 G; 44 T; 0 other;
     cacctctcga aaataagtcg acattgcatg aaatcaggac gattttggcc ctactttagg        60
     ggctgttttt ttatttactg catttccgac atcggattcg gattcagcgt caaaaaatac       120
     accgaaaacc cgtatcttta ct                                                142
//
ID   SATII_PC    repbase;    DNA;    INV; 157 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Palorus cerylonoides AluI satellite II repeat region, consensus.
XX
KW   SAT; Satellite; Simple Repeat; AluI satellite II repeat; SATII_PC;
KW   tandem repeat.
XX
OS   Palorus cerylonoides
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Palorus.
XX
RN   [1]
RA   Mestrovic N., Mravinac B., Juan C., Ugarkovic D. and Plohl M.;
RT   "Comparative study of satellite sequences and phylogeny of five
RT   species from the genus Palorus (Insecta, Coleoptera).";
RL   Genome 43(5), 776-785 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Palorus cerylonoides AluI satellite II repeat region,
RT   consensus.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 157 BP; 49 A; 22 C; 22 G; 64 T; 0 other;
     ctggaaatcg ctttttttcc aaaaccctcg ttttttggat gatttcagca actaccgtat        60
     tttcgttatt ttaaatatta aaggtaatct gattttattt ctgataataa aggcatagat       120
     cttacacatt ttgaatatag gcaattgtta aatatag                                157
//
ID   SAT_DG      repbase;    DNA;    INV; 368 BP.
XX
AC   X83736;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Dociostaurus genei tandemly repetitive DNA (DGT3).
XX
KW   SAT; Satellite; Simple Repeat; SAT_DG; Repetitive DNA;
KW   tandem repeat.
XX
OS   Dociostaurus genei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Gomphocerinae;
OC   Dociostaurus.
XX
RN   [1]
RA   Garcia De La Vega C.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   Genbank; X83736; Positions       1     368.
XX
SQ   Sequence 368 BP; 121 A; 77 C; 66 G; 104 T; 0 other;
     tcgaccgatc agcgccaaac attacataac gtaactaacc tggcctatca gcgacttagg        60
     acctcccctg ttacaaatgt ttccgaccag aaatacgtta gttatactaa aaataggaag       120
     tttgcgttgc gatccgcctt ttgtacattt cagaacttgg gtaatttccc aagggaaggc       180
     caagtaattt taattaataa ttacgatata gagtgatatt agtaagagga acagatcacc       240
     tggaccgtca cagaggatgc caaaatttaa aaatcatact ctcaaacgca cacaattgtt       300
     gaaatacgaa tatttcgata tgtctgtctg tctgtaaagt gttcccactt ttaggtcaaa       360
     ccattcga                                                                368
//
ID   SAT_NM      repbase;    DNA;    INV; 349 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Nicrophorus marginatus satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; SAT_NM; satellite repeat;
KW   tandem repeat.
XX
OS   Nicrophorus marginatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Staphyliniformia; Silphidae; Nicrophorinae; Nicrophorus.
XX
RN   [1]
RA   King M.L. and Cummings P.M.;
RT   "Satellite DNA repeat sequence variation is low in three species
RT   of burying beetles in the genus Nicrophorus (Coleoptera:
RT   Silphidae).";
RL   Mol. Biol. Evol 14(11), 1088-1095 (1997).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Nicrophorus marginatus satellite DNA - consensus sequence.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 349 BP; 125 A; 47 C; 55 G; 122 T; 0 other;
     ccagtagaac gggagatacg gtgattaaaa ctacgtaaaa atcgcgttta tttcgggctg        60
     aaacgctcgt ttttagccga aattaaaaat taattctaac ttttgaatgc gtggagcgat       120
     ttcgatgaaa ttttaaatgg ttatttacta gagcaaaccc aacattattg catgaataga       180
     aatttttaaa ctcactcggt tcatgaaata ataaataaaa attgaatatt ttattgatta       240
     aaaaaaataa ttatttctcg gtagataaat tttttattta gaatctgcat gcaccagctt       300
     actttatttg cgctaaaaat taatatgagc ccttattttt tgaaatcgg                   349
//
ID   SAT_PF      repbase;    DNA;    INV; 144 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Palorus ficicola major satellite repeat region - consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT_PF; satellite repeat.
XX
OS   Palorus ficicola
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Palorus.
XX
RN   [1]
RA   Mestrovic N., Plohl M., Mravinac B. and Ugarkovic D.;
RT   "Evolution of satellite DNAs from the genus Palorus--experimental
RT   evidence for the "library" hypothesis.";
RL   Mol. Biol. Evol 15(8), 1062-1068 (1998).
XX
RN   [2]
RA   Kohany O. and Jurka J.;
RT   "Palorus ficicola major satellite repeat region - consensus.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [1] (Consensus)
XX
CC   144 bp monomer unit of satellite repeat.
XX
SQ   Sequence 144 BP; 54 A; 21 C; 26 G; 43 T; 0 other;
     gagatttcgt taaaatgatg cacaaataag ccgaaataaa tcgaattgag cctaaaatcg        60
     tctgatttct tcgagatttt gttaaaatga tgcagaaata agccgaaata aatcgaattg       120
     agcctgaaat cgtctgattt ctta                                              144
//
ID   SAT_PL      repbase;    DNA;    INV; 375 BP.
XX
AC   U68053;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Planococcus lilacinus satellite sequence.
XX
KW   SAT; Satellite; Simple Repeat; SAT_PL; satellite repeat.
XX
OS   Planococcus lilacinus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Coccoidea; Pseudococcidae; Planococcus.
XX
RN   [1]
RA   Khosla S., Augustus M. and Brahmachari V.;
RT   "Sex-specific organization of middle repetitive DNA sequences in
RT   the mealybug Planococcus lilacinus.";
RL   Nucleic Acids Res 27(18), 3745-3751 (1999).
XX
DR   Genbank; U68053; Positions       1     375.
XX
CC   Satellite sequence repeated 5-6 times.
XX
SQ   Sequence 375 BP; 99 A; 102 C; 84 G; 90 T; 0 other;
     gggcgagcgc gaaagcgaac tgccgctcgt tttcgcttct gcgttcacgt cgtcgttgta        60
     cgagtccatt tggttgcgta cactacacta cactacacta cactacagta gaccacaaaa       120
     agtaggtaca accgctacgc aacgtccacg tccacgtcca cgtccacgtc cacgtccacc       180
     aggtcagctg taggtataca ggtataggta aaagtatacg tattacgtac ctactcgtat       240
     acgtatgtgt ctacgtatgt aggtagaggt agaggcgcct acctattcgc aagcgaaata       300
     tagaaaacgt tgaccgaatg catcgggcat cgtcgtcccg catcatttcg ccatcaatat       360
     atagctagct gatcc                                                        375
//
ID   SGALPHA     repbase;    DNA;    INV; 359 BP.
XX
AC   X52936;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Alpha repetitive DNA.
XX
KW   Satellite; Simple Repeat; Alpha repetitive sequence; SGALPHA;
KW   Repetitive DNA.
XX
OS   Schistocerca gregaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae;
OC   Cyrtacanthacridinae; Schistocerca.
XX
RN   [1]
RP   1-359
RA   Brown T.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (01-MAY-1990). Brown T.,
RL   UMIST, Dept of Biochemistry & Applied Molecular Biology,
RL   Manchester M60 IQD, UK.
XX
RN   [2]
RP   1-359
RA   Brown A.T. and Barker S.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X52936; Positions       1     359.
XX
SQ   Sequence 359 BP; 106 A; 66 C; 84 G; 103 T; 0 other;
     aagcttctaa gttaaagcaa tagccagtaa gaagtagtac aattcaagtt ttagttgtcg        60
     attattcact ttttagccgg ctttggtggc ttggacatga cctaggacct taagattttg       120
     catgaaagga ggactagcag ccgcgtggca cgggagaatg tgaaaagtgt tcatatgtag       180
     taaaaacctg agaaatccgt ccgttttcgt cattttttta tcgaatcgac ttaaagccag       240
     atcgtcacat tggccgcttt tgtctctgag atggttacat ttatcgtctg caaagctata       300
     tcgcgtgcag cgctatgggg agacactaaa agcaccatag tagaaaacag aagaagctt        359
//
ID   SGRP1       repbase;    DNA;    INV; 193 BP.
XX
AC   X73982;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.gregaria repetitive element.
XX
KW   Repetitive element; SGRP1.
XX
OS   Schistocerca gregaria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae;
OC   Cyrtacanthacridinae; Schistocerca.
XX
RN   [1]
RP   1-193
RA   Dawes R., Dawson I., Falciani F., Tear G. and Akam M.;
RT   "Dax, a locust Hox gene related to fushi-tarazu but showing no
RT   pair-rule expression.";
RL   Development 120(6), 1561-1572 (1994).
XX
RN   [2]
RP   1-193
RA   Akam M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (08-JUL-1993). M. Akam,
RL   Wellcome/CRC Institute, Tennis Court Road, Cambridge CB2 1QR, UK.
XX
DR   GenBank; X73982; Positions     288     480.
XX
SQ   Sequence 193 BP; 51 A; 63 C; 43 G; 36 T; 0 other;
     attcttctgt aacaccacat ttcgaaagct tctattcccc tagacttaga actgcttaaa        60
     cctaactaac acaaggacag cacacacatc catgcccggg gcaggcttcg aacctgcgac       120
     cgtagcagca gcgcgggttc ggactgaagg gcctagaacc gctcgcccac agcggccggc       180
     catcctggta aca                                                          193
//
ID   Shinagawa-10_AAe repbase;    DNA;    INV; 2154 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2154
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 847-847 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus. TIRs are 122 bp long and composed
CC   by degenerate repeats. Related non-autonomous elements, named
CC   Shinagawa, are found in Aedes aegypti and Culex
CC   quinquefasciatus.
XX
SQ   Sequence 2154 BP; 648 A; 426 C; 382 G; 696 T; 2 other;
     gggctctacc ccatttggca taatgccatt tggcataatg ccgtttggca taatgccatt        60
     tggcataatg gccatttggc ataatggtca tttggcataa cggccatttg gcataatttg       120
     aagaaaacat ttcctcaaat tattgttctc ttttggcctg ataatgatct gmctatatga       180
     aatgtagggt aggtatacca gttatggaca taatggttcc ctatttcgcc atacgtgata       240
     atttgattac tttcaaatgt ttaatcattc tgtgtgttct agtaatttga tatcgaatga       300
     atctcgatgt taaaacattc aaaattattc aacatgtaaa agttttccag aaaacatata       360
     tggccaaata gggaaccact atagccataa ctggtacact ttccctatgt catcttcgat       420
     tctagacaat ataatagaat ggttttcaac ttccgaccaa cgccctccaa gtcacgcttg       480
     tagctgtgag aagttattcg cgtaaattca taaagagcaa tatgaggagt atagatttgg       540
     cccatggagt gagctcactt ttatcagtct tataatgctt tttgaacgcc tgtctttact       600
     tttttgtaaa gcattagctc aatttttgac cgtgggttgg gtgccacgat tttgtcgtaa       660
     ctgcaactgc agccatctag cctagcctca aaaataaatt gatttttttt ttaattatga       720
     gggtacagaa gttaagtatg aagaacatcc aatgttccaa agaaggaaga tctcaagaga       780
     gacgctttgc attaagtgct acaacattca gttgatacac gattaataat tcgcctattg       840
     ttgaataata tgtgtgttcc taatgaagtg ttcaacaatt agcgagcatt taaatgcatt       900
     caataattgg cgaattacca cccaattaga aattttacct tctttcaaac aatagctgtt       960
     cttttagttt kcagcgtggc gaatgatagg ctcgccatga tcgatgttgt attacatcgg      1020
     attgccctgg taccatgttg attccgaatg taggtcaatc tggagatggg agggaaatga      1080
     tgacgtgttt ctagctttag ggaaaccgga aaacttccac aagaaaacat tgggacacta      1140
     ctcaatcccg gacaatgccc tttattcacc caaaagcctt tctactaagt ccaaacatat      1200
     cgtgaaaaat accatcgtct ggctttcaag gcattaaaca attcaaaaca gcacgatatg      1260
     aaagtaatga ttcgctaaac tgcaaactca aaagaacagc tcatgtttga aagaaggtga      1320
     atattactaa ggcgctgtcc attaaccatg tggtcatttt tcggaatttc tgacccagcc      1380
     cctccccctc ggggttattt gtacatacaa aatttttaaa atttatatgg accgtaccgt      1440
     ggtctttgag cagacccttt ccttcccccc ataaatgacc acgtggttca tggacgagca      1500
     cctaatctaa attaattatc ccacatgcta tggatcttca tctactcgat accttttcag      1560
     caatatgctc aacctcagat gtgacaagta atggctttac gttggtgatg ttattatcat      1620
     cagcctcaaa cgcacacttt gtgacttttt tcagtgcgag aatagctcta catattttga      1680
     attttataaa ttaataaaac tcagtcttga tagtttatat tgacttgaaa aagtatcact      1740
     gtacgcgcta acatgcataa agtatgctga tactttttca gctgtgtcag tgcaaaacca      1800
     actgattttc tttgattcga aatcgtgaga tgaattagca acaatcatca acgacgcgta      1860
     caaatttcaa tgacggccta cttcgcctta aagtatttcc ttgtacttac ttcacattaa      1920
     tttctttggg ctaaaaatca ttatcaatat tttcccattc ttccagtaaa tttcacttgt      1980
     ccacttaaat gaacgagcac ttaaataaac gttttgaaat gtgatttttt ttttcaaatt      2040
     atgccagatg gccgttatgc caaatggcta ttatgccaaa tggccattat gcctaatggc      2100
     tttatgccaa acggcattat gccaaatggc tttatgccaa atggggtaga gccc            2154
//
ID   Shinagawa-11_AAe repbase;    DNA;    INV; 2258 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2258
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 848-848 (2011).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. 9-bp TSDs. Subterminal inverted
CC   repeats are 137 bp long and composed by degenerate repeats.
CC   Related non-autonomous elements, named Shinagawa, are found in
CC   Aedes aegypti and Culex quinquefasciatus.
XX
SQ   Sequence 2258 BP; 651 A; 423 C; 372 G; 811 T; 1 other;
     ggtggtaggt catttggcat aaagtcgttt ggcataaagc cgtttggcat aaagtcgttt        60
     ggcataatgg tcatttggca taaagtcgtt tggcataacg gtcgtttggc ataatggtcg       120
     tttggcataa tagtcgtttg gcataatgag tctgaaacca agaatttctt aagatgacat       180
     tcgtttttac gtttctattg aatcttatct gatkacatca ggcttgtttt ggagtcaatt       240
     gacataaaat gacactttgt tcaataatca tatgctcttg aataaactaa agcatattag       300
     gaaagttatt gccaatagta ttttattatt tatccagaaa ttacccttct ttcaaatatt       360
     aattcttctt ttgactttcg ctattggaat aaatttttgc actgaagatt ttgatatatt       420
     tagcacaaat ttacccttct ttcaaacgtt ctattttttt tttctaaata tgatgtaatc       480
     ataattatag gtatagaaac tgttgattca aaatttaaat aaatttcacc ttcttttata       540
     cataggctgt tctttggagc tatattttta aatattttat tgttcccaac tgacaaaagg       600
     gcggcattcg ataacattga tctgctcaag ttatcagcga aaagagacat cgattactgc       660
     agttacttcg atgggttgtc ctacttttca ccgaatgtcg gttccccgaa tgtcgtttcc       720
     ccgaacgcca gttccgaatg ccagttcccc gaatatccca tttccccgat tagccaattt       780
     ccccgaaaag tttttagcac tcataactgt cgtaacttta tacatttcag ggtggtgaac       840
     gaactggcca tctaatatgc acccttcttt atttaattgg cggttctttc gagttttacc       900
     gtcctcagct tttttgccaa catgtgtata gccgagaatg acagaataac tccttctttt       960
     gattgcttat cgttctttct cgttcactat ccagccactg aagattatta tagcacctat      1020
     ttaaactgca ccacttttcg gggaaaccgg tcattcgagg actggcattc ggggaaccgt      1080
     cattcggaga aacgacattc ggggaaaagt atcacaatca cttcgatgat tctgaacgca      1140
     attgttaatg tcttttcatt ttattatgcc gcaatagttt tcggcgtcca atcttctatt      1200
     ggtttaacca taaattttgc cttcttttaa aaataggctg ttctttatat ttatactgtt      1260
     ttaaatttta atatttagta aagctaaatg tcaaccattt ttatattttg ctgttttatc      1320
     aattcttaca agacgtgctg ttataatgat aattacttta gaacctgcca atattcaact      1380
     tttttttttg caggcgcatg atctcctttc gagatatgct ggcaaaaata ttatctcaat      1440
     cacaaatttt cccttctttc gataatagac ggtgtttttg atgtacactt ccaaaattaa      1500
     aatttatgtt gaatcgttga aaagttttgc cacaaatatt ttcttttaaa aatgtgttgt      1560
     tcctttgagt tatgctgtga gaagattttt tgcgttagag ccttaaacat tttaaacgaa      1620
     aaataatctg ctctcgtata taggctgttt ttgaatatga tgcagtaata gattttaaga      1680
     ttagagcttt taatattttg caaataaatt tcccttcttt tatcaagtga ttttcgtcaa      1740
     gtgttacgtc caaactggga cagagcttga tctgcagcga aatattctat gagcgttccc      1800
     tttattaata actgcgaact ttctttggca atttactatt ctcaaatatg tatatcgcaa      1860
     caagctcaaa gatactctat gttctgggat gtagagaaaa ttattattcc gaaaagatct      1920
     tccaccagac ccgtcacgag ttttatttag taatgctctc taatgtcaca acaattttga      1980
     cattgatagc tgaaaaatct ctgaacgaac accacgcttg ttgagaacct accaaaaatt      2040
     tttgctatgg gctcggtggt gttgatctcg gtaaaagctt caaaaatgcc gatattcatt      2100
     ctaagtcaat cattatgcca aacggccatt atgccaaatg accattatgc caaacggcca      2160
     ttatgccaaa cgaccattat gccaaacgac tttatgccaa acggctttat gccaaacgac      2220
     cttatgccaa acgactttat gccaaacggg gtacaatc                              2258
//
ID   Shinagawa-1_AAe repbase;    DNA;    INV; 2255 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; Shinagawa-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2255
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 838-838 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. 8-bp TSDs. TIRs are ~130 bp long,
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus.
XX
SQ   Sequence 2255 BP; 699 A; 416 C; 405 G; 734 T; 1 other;
     gattgtgcga tatttgccag aaaaccattc gccagaaaac tattcgccag aatgacatct        60
     gccagaaaac cattcgccag aatgtaccat ttaccagaaa accatttgcc agaatgtacc       120
     attcgccaga aagtaccatt ccccagaatt atttttcttg tcgattttga tcaattaatg       180
     catggtgaaa tatctcggaa tccaaagatg gccgtcacaa tattcgactt gtgccacttt       240
     tcacatcttc aagagcacta aattgaacta atagtacggt aacaatctcg ttcttctcat       300
     tttaagcttt ctgctagtgc acagagcgga gacaatataa cactgttatt ctacatctct       360
     cgcgagattt ttgcctatga ggttttgata caatattcta agctgtttta cctagtttta       420
     acttcgagaa aattgcattt cctttcaccg cgagctgttc ttcatcagaa tattgtattg       480
     tacagaattt ctcgtacaac taccagataa tttttgcttt tcaattgaca gtttattggg       540
     gttgtgctac tttctcccga atatcgatac cccgaatgtc gtttccctga ataccccgtt       600
     ttctcaagtg gcctatttcc tcgaaaatgt tttggcactc ataattatca taacttattg       660
     tatatttcag ggtgatgaac ggttcatatg atatgcaccc ttcttttttg atcagcggtt       720
     ctttaaagtt tctccgaact cagcattttt tcttgttttc tttatcgttc tttctagttc       780
     accactctgt ctctgaagat tgtttcttat ccattttgaa ctgcatctat tttggggccg       840
     tccatgaacc acgtggtcgt tcaagagggg gtagaagggg gtggttctat cctaatacca       900
     cgatccatac aaattttggg tcattcggga gaatggattg cggggaaaag tgtcattcgg       960
     gtaactggcg ttcggggaaa tgatattcga gggaacaaca ttcgggtaaa aatagaccaa      1020
     aaggttttta gtgataatgg tcacctaaat ttcagtacat gaaaaagtat tcaaaaaaga      1080
     gtcattgcct atcgctactc gacatggttt ggggcaaata agaattctcc attctccata      1140
     tataggatgt tcttattaat tttacaactg tcttatttgt ctgaaagctc ctgaaagttg      1200
     ttatagtaaa tgtaactttg gtttgcgagt ggaggcatta attacttcat cgaacagacg      1260
     gcacaaatag ttgcaacgta tatcgaaatc ttgtaaatat ccaatgaact agcccttaag      1320
     aagcaacaaa actttgaaga acagcttatg atgaaaagaa gggagaacta cttgtgaaat      1380
     attccaaacc ataattccct gtaaaactta ataatataaa aaaaaattaa ttgaaactga      1440
     aaaattcaga aagaaaatcg tatggaattt actaattata aaatagcata atctcatgct      1500
     ataacatctg tataacaata gttgcaacgt atattgaaat ctcgtaaata ttcaatgaat      1560
     tagtccataa gaagcaacaa aactttgaag aacagcttat gctgaaaaga agggcgaatc      1620
     tcttgtgaag ccttccaaac cataatacca ttttacaggg acaacgtata ttaaaaaaaa      1680
     acttactatg ctatcagtca tgctgagtat taaatcttta catcagtaag cagtatcttt      1740
     catacatagt ggagcagctt ttaatgaatg caactgttat tctattgtat gttctttcta      1800
     gttccacggt cccccagkat taagtgctgc cttttcaatt catatttata aaacttcaaa      1860
     tgttgatgtt gatcgttgaa tgctcgagaa atcgatattt tcataaggaa gtcatgtgta      1920
     cctagtccaa caattagaat acggatattc gaagctggct cactaagtca acggtagatt      1980
     gtgtccaaga gaccctgtac ttttttgagt atactaacca aaataatctc acacattttt      2040
     taaggctcta caattgcaaa cttgatttac ctgaaaataa aataaaaaaa ttctagggga      2100
     tggtaaattc tggggaatgg tacattctgg cgaatggttt tctggcgaat ggtactttct      2160
     ggcaaatggt tttctggcat atggtacttt ctggcggatg tcattctggc gaatagtttt      2220
     ctggcgaatg gttttctggc aaatatcgca caatc                                 2255
//
ID   Shinagawa-1_CQ repbase;    DNA;    INV; 1642 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1642
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 93-93 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >93%
CC   identity. 5-9 bp TSDs. Related non-autonomous elements, named
CC   Shinagawa, are found in Aedes aegypti and Culex
CC   quinquefasciatus. An insertion of DNA transposon ~89% identical
CC   to DNA-AATT-1_CQ at AATT (1261-1264) is excluded from the
CC   consensus.
XX
SQ   Sequence 1642 BP; 540 A; 299 C; 323 G; 480 T; 0 other;
     gaatctatga catttccccg aaacccatat taccgaaggg acatttcccc gaatgccact        60
     tccccgaaaa gacacttccc ctaatagtca tttccccgaa ttccatttac ccgaatttcc       120
     catttcccct aatcgtccac atccccgaat gccattttcc cgaatgggcc acaatcccga       180
     atgccactta cccgattagt catatccctg aatagtcatt tccctgaatg ccatttcccc       240
     gaacgcggtc aagcggaaat gcccccggag cgcgcgctcc tgggcaccgg gcatttccgc       300
     ttgaccgcgt tcggggaaat ggcattttaa aagaaaaaaa atgatgacaa tttttatcac       360
     atcaaactac atatttaaag gttcgtattg gccttgaatg atcaactttc tttttggctt       420
     cattcagaac agacgtagca ttttaggggg gagggttcaa aggttttaca atattcaaat       480
     acaatgaata ttgttacaga ctttttttta tacatatatt ctcaaaacaa atactttttt       540
     cttatagaca tgataataat aatgcaatag aagttttgtt attttttatg attcaaaaaa       600
     cataccgtgc gattttcgta gtacagaacc ccgtacacac tgatcatttt attcacattg       660
     ctggtttggg atttggcgaa aagtataatc aacaaaaact ttaaataaaa tttgtaccag       720
     ccttatgtac ctatttgttc gatttttggg ttcttgaaca aaattcgaaa aaagacaaat       780
     ttccttgcaa atttctcaaa aacaacatct aattatgcgg ttgaatacaa atgttaattg       840
     aacaaaaaaa aactagtaca gtccagactt gattatccga aggcttcgga aaaatttcac       900
     ttcggataat cgaatcacga ttttttttga tgcctatttt ttattgtcga gcgtatgtcc       960
     cctaaactac gttaaagtga tttagaactt ttaaatccaa gatggcggcc aatatggcgg      1020
     tgttgaaata ttgaaaaaat gcattttatt atttaatagg caatcaacta ttcaaatttg      1080
     actaaaatgg ggttgcagaa ctcaaatttg atgtttaaaa caagaaaaag aaaaaaaaaa      1140
     cgaaaaaaaa attgttcgtg attcgattat ccgaagtccc atacaaacct tcggataatc      1200
     gaacttcgga taatcgaaac ttcggataat cgaggcttcg gataatcgag tctggactgt      1260
     aatttacaac atttaatcaa cagcataccc gaaaaagctg tttgttcggt aaaattgaga      1320
     aagaaaataa ctgttagtca tggaaaaagg ctttagcgaa aatgatgatt aggggatatg      1380
     aaaattcggg aaaatttaaa tttaaataaa cggcaattgg cgtaagtgtc acttcgggga      1440
     aatggcattc ggggaaatgg ccgattaggg gaaatggcat tcggggatat agccgattag      1500
     gggaaatgat attcggggaa atggcattcg gggatgtggc tgattagggg aagtggtatt      1560
     cggggatgtg gccaattagg ggaaatgatt ttcggggaaa tggcattcgg ggaaatgtca      1620
     ttcggggaaa tgagctagac cc                                               1642
//
ID   Shinagawa-2_AAe repbase;    DNA;    INV; 1857 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1857
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 839-839 (2011).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 8-bp TSDs. TIRs are ~130 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus.
XX
SQ   Sequence 1857 BP; 512 A; 398 C; 338 G; 608 T; 1 other;
     ggctccatcc cattaccccg aacgccacta ccccgaacgc cactaccccg aatgccacta        60
     ccccgaatgg gtcactaccc cgaaagccat taccccgaat gggtcattac cccgaacgcc       120
     actaccccga atgagccatt accccgaata gtatgagata cagtgaaata tattgttttg       180
     cgggcaaaaa tgcgtctcta atgaaaactg gtaattaatg gcgcgtaaaa ttcgtcggta       240
     aaatgttcat catatatttt cccttctttt ttatgtcagc tcttctttcg aaatatattg       300
     ttggcaactc ttctcattct ttcggagacg gtaccttttt atcagcccag tgggcacttt       360
     cgcagttcaa gggttcattt acaaatttca taacgccaaa aatttctatt tttgacacct       420
     acccacccgt tcgtaccact ttttgtatgg acaacatttt ttgtcccctt cagcgttacg       480
     aaatttgtga atgggctttt gataaaataa gccgtttatt gactgagacc tctccttgtc       540
     aacttaccat tattgtacat gttctattgt tcctgggcat agaacgtcaa ggaaatgctc       600
     aatgcataag atccaccact ggaggaattt gaacccataa cccttaatat ggtcttgctg       660
     aacagctgcg tgaacacaga tatttgaact tcttggtggt gtccatattt caattttgtt       720
     ttaaagcaaa tattttcctt tcttgtgtat atatgttgtg tcatagcatg atatgacata       780
     tcatattgtt acatatcacg ttgttacagt gatcattcac gtcatagctg caaacatttc       840
     accagaaatt tccccttctt tcttaaatag gctgttcttt caagttttcg ttggacaagc       900
     tagtcattaa tatttccata tagaacagct ttttttgaag gaatatatcc tgaaggcatt       960
     cactcaagtg aatcctccta taattctaat cagtaatttt ccctttcttt catcttcttg      1020
     tattgaaaca gacaggtctc ttatgaattt gctcaccgct ttgctgtcat catcatttct      1080
     tcattgtgct gaatcggaaa aaaattgtga ttatctcatc gaaattcaaa ttaatgatcc      1140
     cacaaaccaa cgaaagtttt tactgtagcg gcaatcaaag gccgccgttt ttctaacatg      1200
     tacaagtgta ttaacgtttc cttgctttag tggaacggtt gtctatcagg ttggttttta      1260
     agcgggttcc atagacgaac acttgcagcg attatctcag ggtgatcttc cattaccacc      1320
     gtttacgaaa caaawtcttt aaggagatct taatgctagt agcccgacac ctacaatgag      1380
     taaaggaagt gggttccgac gtccaataag aaactttact acatcctaat tttgtgcata      1440
     ttatagctat cctttgcata ataaattcac ccttcttttc gaaataggct gttcttcaga      1500
     gcattgcaat gtggctgtgt gaatctcacc aaaattagag gacaaatcga aataaaactt      1560
     agtattcaaa aattattagc taaaaaacta gctgctttta tatcttctaa tgtttgaaat      1620
     ataaattgtt gagccactcg ttaaatactc ataaggaatc gtacaattat ctccccactc      1680
     tctcactaga ataagttcca aattttatgc attcggggta atggcgttcg gggtagtgac      1740
     ccattcgggg tagtggcgtt cggggtaatg acccattcgg ggtaatggct ttcggggtaa      1800
     tggcgttcgg ggtagtggca ttcggggtag tggcgttcgg ggtagtgtca tagaatc         1857
//
ID   Shinagawa-2_CQ repbase;    DNA;    INV; 1961 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   17-FEB-2011 (Rel. 16.01, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   DNA transposon; Transposable Element; Repetitive element;
KW   nonautonomous; Shinagawa-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1961
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 94-94 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >83%
CC   identity. ~7-bp TSDs. Related non-autonomous elements, named
CC   Shinagawa, are found in Aedes aegypti and Culex
CC   quinquefasciatus.
XX
SQ   Sequence 1961 BP; 605 A; 414 C; 372 G; 570 T; 0 other;
     gaatctatga catttccccg aaacccacat tcccgaaaag acatttcccc gaatgccaca        60
     tctccgaaaa gacactttcc cgaaatgtca tttacccgaa aatcatttcc ccgaacaatc       120
     catttccccg aatggccaca tccccgaatg gcgacttccc ctaaaaacca ttttcccgaa       180
     tggccacttc ccctaatttt ccacatcccc gaaaatcatt ttcccgaatg accatatccc       240
     cgaacggcca tttccccgaa cgccacttcc ccgaacccgg tcaggcgggt atgcccgttg       300
     cccagaaccg cgcgcgcggt tctggacaac gggcataccc gcctgaccgg gttcggggaa       360
     gtggcgatca atgaagtatc atgtccacaa ttgaacgttc aaaaaattcc gagtttttta       420
     cgagcgtttt attccagctt cacttaaatt ttgaatattt tccaagtctg tggagttaaa       480
     ggattcgaat tccggattct gagatttagt tactccaact gcctttcaaa aagaactgac       540
     tccgccgaat ccaacaaaaa ctccgactat gacaaatgat gtagagaagg agaacatctt       600
     gagcagagta catatttcta atgaacaaat ctaaatagct gcgtgccgct taatacattt       660
     gcctattttt ctcatttcgt cgcagtcgag ctaacttgtc gtacgtcgat tttgggccaa       720
     attgaattaa gaaagccatt ttgtgcagct cacaatgcct catcttttga cctacataga       780
     tacccaaaat tcgatttcaa ttctgagata ttcaataaaa accgaaaaat gtcgtctcgt       840
     gctaacttga cacactctga aaattgctgt aagtgcgaca actggccaaa gaggtttcag       900
     atcagaatgc gtttgacaca cgtacatgcc cgactaccgt gaacgtttgt aattataact       960
     cgggacctca gcaaccaaat tcaaacaaat ttcaggacaa tgcacagaat ggtcaaccaa      1020
     ataaaacgtg tttgttattg tttacatagc gtgctctatt tttcgtttat tcaaggtcaa      1080
     acactaacac gctttttctc ggaacgtcaa aaagcgacaa acgacaagat agcacgacag      1140
     cgtcgatttg atacattgat catttcgctt tttttgcatt tagttgaaaa tcaaaataca      1200
     gtccagactc ggttatccaa aggccttgtc aaaagttcac ttcgggtaat aacccctaaa      1260
     ctactttaaa gtgatttagt aattttaaac ccaaaatggc ggtgatgaaa tattaaaaag      1320
     cattttgtaa ttcaataatc aactatttag atttactaaa aagttaaaca aaatctagaa      1380
     caaactgatt cctgcgtttc gagtcgtcgc ttaaagatat cgttgctgtg caatccttac      1440
     cacgtggata ccgttttgga aaattgtgct ttgctgaaaa ttgtccatac aaaaaaaatc      1500
     ttttttattg aacgtggatg atctcaaaac ctcgctttct tgaagtttcc gcgtggttta      1560
     tgaatggcct tctacggtca tttgtttttt tttcatattt aaaaacacac gtaggagaat      1620
     ttaatattaa ggtcatactt ttgtaaaaat atccctaaaa aacaatttag tttatatcta      1680
     agttaatatc attcgggaaa atggaacttt cggggaaata accattcggg tatatgtaaa      1740
     ttcgggaaaa cgacagttcg gtaaaatggc cattcaggta aatgacattc ggggatatgg      1800
     aattttcggg aaaatgattt tcggggatgt ggaaatttcg ggaaaatgat tttcggggaa      1860
     atggcacttt cggggaaatg attttcggga atgtggaatt ttcggggaaa tgattttcgg      1920
     ggatatggga ttcgggaaag tgggattcgg gaatatggga t                          1961
//
ID   Shinagawa-3_AAe repbase;    DNA;    INV; 1882 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1882
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 840-840 (2011).
XX
DR   [2] (Consensus)
XX
CC   >90% identical to consensus. 8-bp TSDs. TIRs are ~130 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus. The insertion of DNA-TA-8_AAe-like
CC   transposon around 272 and that of DNA-TA-4_AAe-like transposon
CC   around 1627 are eliminated from the consensus.
XX
SQ   Sequence 1882 BP; 638 A; 297 C; 316 G; 629 T; 2 other;
     gattgtatga catttgccag aaaaccgttt gccagaatca atttgccaga atgatttttg        60
     ccagaaaacc attccccaga atgtaccatt cgccagaaag ccattcccca gaatggacca       120
     tttgccagaa aaccattccc cagaatcatt ttttgtaata aattttcaac tttgatatga       180
     aatctattga tcgaaaaatt tatggaaaac ttaaggctac cgaagtatta aaaattgtta       240
     tttgagtatt ttgattatat gtacttacat tgatttgtac ttatagcacg aaacagtgta       300
     taaccaactt tcagataatt taatccagaa gagtggacta ctaacactgc atagctactg       360
     cgaaaactga attggacttt agcatcccta ctacagcaac ataacgttcg cgtcgtggat       420
     gttgcgccaa atcatatttc aatcttgtaa tataaaaaca agtataaaac aacgtgattc       480
     gtcgaactat gttgtactaa gtaaaatttt gttacaatct ttcgcataca attttatgca       540
     attttcacaa cgtgaaagat atatggggga actgtcacca gatttccatt ttttgctgca       600
     taactgacct gagaaaaaaa agctaaaatg ttaggcaaac atacttttag ttgaatggat       660
     atttgactga agagtgtatc tttgagaaat atcgcaaaac aatcaaaaga accgcctttc       720
     attgaaataa gggaaaattt tatttgaaat atcatcagct tggcgccaat aattatttgt       780
     ataactcaaa tgaagaagac aaaattcagc taaacgtcct ttcggtcata tatctgaatg       840
     aattattcaa aaaaaaaaaa aataataacg ttaaactttt gttatctcga aaataatttt       900
     aaaccacgta tgttttagtt ataagatagt tttatatcat ttgcgacagg ctgccsaaaa       960
     attcttcaat cttcagtatt tgccctgatt gtaagtttca actatctggt accggatata      1020
     ttcagaaatc ctttggagga ctgccacgtg ggcatgattc gttgtgttca gccaattgag      1080
     attttgtttt tttttgtatt cagtcaattg ctgtaggtaa cgagattttt gtttttggaa      1140
     tcactcgctt gaagattaca aatcatatgw atgtcatggt taaaaaatta aacatggctt      1200
     ctttatttgg agacaggatt gatttcaatt ttacgatttt tgcatttcat tattttgctt      1260
     caatccacat tgcagaattt ttattcccac ctgtgtttta tttaatattt tcaatcactg      1320
     tatttattga aaactgagat gacagaatat tgttgatata attttcaaca agttttcagt      1380
     acaattaaga agaacagcca atgatataaa gaagggtgaa tctcctatga agcatataag      1440
     tccttgtgta aattagttct aaagaacagc ttaatactca aagaagggaa aatcttcaat      1500
     agaatgttga aaatagaatt gtctttaatg ggtgttatag aatagtctga aagatgatca      1560
     ttacagcatt gaaaaatagt aattttgcga aaattatgaa aagctcgaaa gcctatgata      1620
     ttttccccta taatttgcta aacattttat cacataaaaa ggtgaaaatc ttacgaaaca      1680
     cttacttaca cgcctaagta ttgctatgcg aagcttagta atgaagaaat attattttct      1740
     ggggaatggt ctttctgggg aatggctttc tggggaatgg tccattctgg caaatggttt      1800
     tctggcaaat ggtccattct ggcaaattga ttctggcaaa cggctttctg gcaaatggtt      1860
     ttctggcaaa tgtcatacaa cc                                               1882
//
ID   Shinagawa-4_AAe repbase;    DNA;    INV; 2556 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   11-APR-2011 (Rel. 16.04, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2556
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 841-841 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 8-bp TSDs. TIRs are ~110 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus.
CC   The region 2229-1960 is an inserted FEILAI-1B-like element (~84%
CC   identical to the FEILAI-1B_AAe consensus).
XX
SQ   Sequence 2556 BP; 822 A; 478 C; 409 G; 847 T; 0 other;
     gattgtatga catttgccag aaaaccattt gccagaatca atttgccaga atgatttttg        60
     ccagaaaacc attccccaga atgtaccatt cgccagaaag ccattcccca gaatggacca       120
     tttgccagaa aaccattccc cagaatcatt ttttgtaatt cgttttcaac cttgatatca       180
     attgatcgac atatttgtga agatgcatcg aagccaaacc tcaaattttc aagagcgcaa       240
     atctagagac ccaaacagcc attccagctg aaaatttaat cgattggtca ccaccagcgt       300
     gtgaccaatc gattaagttt tcagctcaaa ccgctggctg gttctcgagg tttatgctct       360
     tgaaaatttg aggtttggct tcgatgcatc ttcacctcaa gcctaccgaa attttcgata       420
     tttgtcattt ttgtatcttg aatatactca tattatttgc acttatagca tgaaacattg       480
     tgtagtcaac tttcacatta tttacatcaa gaggattgga ctactagcac tgcacagctg       540
     cagcgcaaaa ttaattaaaa tttagcgtca cttctacagt acttcactcg catcgtaaat       600
     attgctccaa ataatgttta tatctttgta atattataac aagtataaaa caacgcaact       660
     gatcgatccg tgttatttag tctatgttgt taaaatcctt cgcatacaat tttatgcaat       720
     tttcactact tacatagctg gtctgagaac aaaaaagctg aaacgtttga cacgaattag       780
     tttagttgaa taatttcaga aatatgaata gtgtatcttt gcggaaaaaa attgcaaaac       840
     aactaaaaag aacagccttt gagtgaaaga agggaaaatt atgtttgaaa tatgatcagt       900
     ttagcgccaa taatcattgg aacaatataa ctcaaatgac tacccaatgt tctttcggtc       960
     atatatttaa atacattatt cagtccttga aaagaacgtt aaactgtttt actcttaata      1020
     ataatttgaa ccgcattatt tattgtttta aagtagtttt acaacatttg cgacaggctg      1080
     ccggaaaact cttcaatctt cagtgtttac cctgattgct agttttagct atctggaacc      1140
     ggagatattt tgaaattctt agcaggactg ctacgtggcc atgattaatg gtggaaacca      1200
     aaaaaacaca catatattgg tttctcatat tctgtcgctt gctctacgaa acaagtcggt      1260
     tatgaagatt aatgttttcg gaatcactcg agtaatcttc aatgagaaat tagatgaagg      1320
     tcatggtaaa tattccatta ttgaatcact ttcaatttag ttttttttta tttgaggaca      1380
     tatattgatt gtccatttcc cgatatttgc atttttttac ataaatcctt tttacagaca      1440
     tttttattga cagcagtcct atattgattt ttttagctgt aattatttaa aattgagatg      1500
     acataacctt gtttacatta cttccattcc ttctgttaac tgcaggcaga aacacacagt      1560
     acaattataa agactagcca ataatataaa gaagggtaaa tctcctatga agcatataag      1620
     tccttgaatt agttagccct aaagaacagc ctaatcttca aagaagggaa aatcattaat      1680
     agaatgttga aaatacagtt gcctataagg ggttgtccat taacaacgtg gtcaattctt      1740
     tcggattttt tacctccacg gggtctttcg tccatacaaa aatttaaaaa gaattgtttg      1800
     tatcgtggtc attggccagg cccccttcca tcctcccata aatgatcaca tggttaatgg      1860
     acgaccccta atagcttgta taaaattgat gactatttta acattaaaaa aaaacagtta      1920
     tttctcagaa actatgaaaa cctcggaaat ctattacacc ttcttcttct tatcttgtgt      1980
     tacgtcccaa ctgggacaga gccaaatctc agctttgtgt tcttacgagc acctccacag      2040
     ttattaactg agaactttta ttgccaattg atcatttttg catgtgtata acgtattgcc      2100
     gatatgaata tgctctatgc cctgggaaat cgagaaaatt ttcaatccaa taaaatcttc      2160
     gcccggtgga attcgaactc acgtccgtca gcttgctgaa tagctgcatg tttaccccta      2220
     cagctatcta tataataagt ttatgatatc attattagtt taaaacattt tatcaaacaa      2280
     aaagcttaaa aacttacgtc acaattattt tgcatataat tatgtatcgt acgctgaaaa      2340
     tcataatgat tcgaaagatt ttacacacct aaatattgct acacaaagca aagtaatgta      2400
     gtaatatttt ttctgggaaa tggtctttct ggggaatgac tttctgggga atggtccatt      2460
     ctggcaaatg gttttctggc aaatgatcca ttctggcaaa ttgattctgg caaacggctt      2520
     tctggcaaat ggttttctgg caaatgtcat acaacc                                2556
//
ID   Shinagawa-5_AAe repbase;    DNA;    INV; 2104 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   11-APR-2011 (Rel. 16.04, Last updated, Version 2)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-5_AAe.
XX
NM   Shinagawa-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2104
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 842-842 (2011).
XX
DR   [2] (Consensus)
XX
CC   >88% identical to consensus. 8-bp TSDs. TIRs are ~110 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus.
CC   The region 1766-1496 is an inserted FEILAI-1B-like element (~86%
CC   identical to the FEILAI-1B_AAe consensus).
XX
SQ   Sequence 2104 BP; 679 A; 368 C; 353 G; 704 T; 0 other;
     gattgtatga catttgccag aaaaccattt gccagaatca attcgccaga atgatttttg        60
     ccagaaaacc attccccaga atgtaccatt cgccagaaag ccattcccca gaatggacca       120
     tttgccagaa aaccattccc cagaatcatt tttttgtaat ttattttcaa cctttatatc       180
     tattgatcga caaacttata gaaaatttaa ggctacccaa ttttccgata cttgctatgt       240
     tagtgtcttg aatttactca tattatttgt acttagatca taaaacattg taaagccaac       300
     tttcagatta tttcatcaag agaattggac tattagcact atataaaagc atataaaaca       360
     aagcaattga tcgatccgtg taatttaggc tattttgtta cattccttcg caaacaattt       420
     tatgctcaca acgtgaaaga tgtgtggcag aactggcgta agattaactt tttttttgct       480
     atatagctga cctgaggaaa aaaagctgag acgtttggca cgaattagtt tagttgaatg       540
     gatttattgc tgaatagtgt atttttgcga actatcgcag aacatttaaa aagaacaacc       600
     tttcattgaa agaagggaaa attatgcttg aaatatgata agtttagcgc caataattat       660
     tttaacagta taactataat gataataaat ttataaacat tattcaagtc ttgaatttga       720
     aaaacgtgtt tttttgtttt aaaataattt tacacaattt gcgacaggct accgaaaaac       780
     tcttcaatat tcagtattga ccctgatttt ttgtttctgc tatctggtac cagagatatt       840
     tagaaatccc ttggaggact gccacgtgga catgattcac ggtggaaacc gaaaaactca       900
     tagatttttt ttatattcag tcacttgctg tacgaaacaa gtcggttatg aagattgatg       960
     ttttaggaat gacttgagcc attgaagatt acagattgga taaaggtcat ggttagcatt      1020
     ccatgatcga ctcactttca atacagctcc ttttttagga ctgtcagtga ctctttttcc      1080
     gatttttgca tttttttttc atttcactta aatcctcttt gcagacatct tcattgttac      1140
     cagtctattt ctgatttgtt cctaaatact ctaattattg aaaattgaaa tgacacagta      1200
     ttgttaatat aacttccatt gcttttgtta gctgcaggca gcaaaacacc ttttcagtac      1260
     aattatgaag aacagccaat gatataaaga agggtaaatc tcatatgaag catataagtc      1320
     cttgtatttg ttagccctga agaacagctt aacatttaaa gaagggaaaa tcattatgaa      1380
     aatgttgaaa atacagttgc ctataatagc ttgaataaaa tagtctggaa gatgatcatc      1440
     agaacattgt aaaaatagtt atttcttaga aactatgaac acttcggaag ttaaacttct      1500
     tatctggcgt tacgtcccaa ctgggacaga gcctacttct cagctaagtg ttcctatgag      1560
     cacttccaca gttattaact gaacttttat tgccaattga ccatttttca tgtgcttatc      1620
     gtattgcagg tacgaagata cttcgaaggg gaatcgagaa aatttccaat ccgaaaagat      1680
     ctttgaccgg tgagattcga acccacttcc caaagcttgg tcttgttgaa tagctgttag      1740
     tttaccgcta cagctatctg ccccccgtag tctataatac tattagttaa aaatatgttt      1800
     ttaaacgaaa aactcatcta agaacacaat tattttctat ataaggcaaa atatataaca      1860
     acaatttcca tatatatcgt acgctcaaaa gcataatcat tcgaaggatt tgacacgcct      1920
     aagtattgct acgcatagca tagtaatgaa gtattttttt ctgggaaatg gtctttctgg      1980
     ggaatgactt tctggggaat ggtccattct ggcaaatggt tttctggcaa gtgatccatt      2040
     ctggcaaatt gattctggca aacgactttc tggcaagtgg ttttctggca aatgtcatac      2100
     aacc                                                                   2104
//
ID   Shinagawa-6_AAe repbase;    DNA;    INV; 2525 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2525
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 843-843 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. TIRs are 117 bp long and composed
CC   by degenerate repeats. Related non-autonomous elements, named
CC   Shinagawa, are found in Aedes aegypti and Culex
CC   quinquefasciatus. The insertion of DNA-TA-8_AAe-like transposon
CC   around 610 is excluded from the consensus.
XX
SQ   Sequence 2525 BP; 815 A; 434 C; 471 G; 804 T; 1 other;
     gattgtccga catttccccg aaaaccattt ccccgaatga tttcttcccg aaggattttc        60
     tcccgaaaac cattttcccg aatgaactgt ttccccgaat gtaccgtttc cccgaaagct       120
     ttttccaaag acatttttca tttatttaaa aaaaatatcg gtgaaggtag catccacaaa       180
     ttacgtaacg ctctagggag gagtaggctc aaacgttacg gctcacacaa aaatttgaaa       240
     tttttcatac aaaaagcgtt acggatggag ggagggggtc acaaatttcc aatttaggcg       300
     ttacttaata aatggacgct gcctaagact atattcagca agcttgataa tcgcttcgaa       360
     cggatgattc tcttatgaat gatttgaatc gaaaaacgaa agatgagata tttggagtga       420
     aaatcgatga cagtttttac tggcaggtct gcttttaaaa atatgttaaa aaagtaaagt       480
     tcggttttca aattttatta tgctaagaat cgcaataaaa atacataaaa tatttcgaaa       540
     gatcattcaa gagatgaaca aatctgacgc ttaatgttgt ttgttcgaac ataattcatc       600
     ttaatgaaat ctagctgaac gggcaaaggc agaataatga aataaagttt gacctggttg       660
     aaaacagttt gcaggattca aagacgtgac cctaatgaga tcttcactgc atgaaaactt       720
     agaaagaatg aatgagtcac aaatgtcgtt ttcgttttta ggaactgggt cagtgatcaa       780
     cacataaaca aaccaacgtc aagaaaattg tagctcggtc gaacctgaat cgggttggag       840
     ttgtaactgt gagtcagagc gaccagttcc aagtttcgcc agttccaacc taggctcaaa       900
     aacgaattcg acattagttg attggggacg catttgacag tccagcacac cgtgtccaga       960
     ctatcattcg atcattattt ccgcgttagt agattgtgtt tcttaaaaca taagcagatg      1020
     ttttttttaa ctacaactga gaacgtaaaa ggcttgtttt caattttata aaaatccctt      1080
     ctttaggatg ttcttcttta tattactggt ccaataatca ttggcgtcaa aatagttgat      1140
     aattttaaaa ctctcgcctt cttatcgtcg taggcagttc tttaaagctt tgctggtttc      1200
     atattgttct gcttgcagct gctactgatt tcatcataaa tttgcccttc ttttatttga      1260
     aggctgttct tcatagataa atatatcaat ataaattaac agagctactg aaactttaat      1320
     cagatttttt ctggtaatta catgctacta gttcaaatgt cattgtgaga acgaatacta      1380
     cagattctaa tattttgatc caacattttc aatgctttcg acctacttaa ttaattaaga      1440
     cttaattact taacttaatt aggagttttt tttttcaaat aggcgatttt ttctgtttaa      1500
     ttagtgatta ttagcatttt tagtattcat tactaacatg ttctctgtat ttaacgtttt      1560
     cgactagatg acccatttag gaacgatttg gaaaaattga cgttcgggag aattgtttct      1620
     atccaagaca taaaaaaaga tttttatctg gaaaactaat gcttattctg cgcggcgtgt      1680
     gagtcgagac gagtcgttct cacctcgggt gacgtgagac aactaatgta aatcaaatgg      1740
     gaacgagtcg taacctcatt cgacttgtct cacctcacac gccgcgcaga ataagcacaa      1800
     ttgattgtca gggggagaag aaagactaga agggagactc aaggtttaat tatgtagtgc      1860
     aagatataat agattctaag gatcaatggt ttcactgtag ctagtcacta agtgtaatga      1920
     aattacgttt aacctagtgg acatatggca cgaagacgtt tggcatcttt gtgtaataat      1980
     gcgaaacaat gtgaaagaac agcctattat taaaagaagg gaaatttaag attatcagct      2040
     aagtgtcact gaatattgga acagtataaa tataaagaac agcctattat tctaagaagg      2100
     caaaactaag ccgaatgttc attcgtccaa atgttcgtaa gccaaatatc tatactccaa      2160
     agataccgct tcaaatgaaa ctgcctatca tgtgctcgct tttttcatca gggtatcaca      2220
     aaaattaatc taagttgttt tgagccaaat gctcgtggcc attattttga acatctgtaa      2280
     ctttaaacac atggattttt atcacaaatt aatcaatttt cgtctaatct tacatcagct      2340
     aacacgttga atactttttg gcagcaggaa catggatagc tttcagtatg tcatttacat      2400
     tacgattttt tcggggaaat ggtacattcg ggaaaataat tttcggggaa atagttcatt      2460
     cgggaaaack tcattcgagg aaattgcatt cggggaaatg gttttcgggg aaatgtcgga      2520
     caatc                                                                  2525
//
ID   Shinagawa-7_AAe repbase;    DNA;    INV; 1937 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1937
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 844-844 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. ~8-bp TSDs. TIRs are ~120 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus. Sequence 1405-1659 is ~75% identical to
CC   FEILAI-1B_AAe; indicating it is a composite transposon.
XX
SQ   Sequence 1937 BP; 562 A; 367 C; 361 G; 640 T; 7 other;
     ggttctccga cattacccgg aaaaccatta cccggaatgc aatttacccg gaagaccatt        60
     acccggaaag ccatttaccg gaatggacca ttncccggaa aaccattnac cggaatgaac       120
     catttaccgg aaaaccatta cccggaagga ccatttctcg acttntttca ttaacgtcct       180
     tttaaccgtt ttacggtcat tcaggtcagt atgttgactt aaaaatattt aaaatgacca       240
     ccaacgataa ggttcttagt tcaaaataca taagcaccag agaggagtct aagatatctt       300
     catacttgat catgtcaata tgcaccatct tcatatattt gcatttcata aatgattcac       360
     ccttctttta aaaataagct gttctttcaa cttatctttt cagcttgtct tggctgaact       420
     ggcttaattt ggctacaact atgtaacttt acgtttaata ttcgaccgtc gattctccaa       480
     gtgtccaaat gttaataaat aagcaatgat tagaattttt aatacttttc gccgagtgtc       540
     aattcgccga atgtcgtttc cgcaaacgtc aatcaaccga ttgtaaatcc cccgtatatc       600
     cctttttcta gaatgaccca tttcgggtca tctgatattc acccttcttt atttggttgg       660
     cggttctttc gagttccacc gatctcggca tttttggcaa aatgtgttta gtcgaaaatg       720
     accaaatatc ttattatttt gattgcttat tgttctttct tgtttattac actggcattg       780
     aattcggggt acagacattc agagttatga cattcggaga aaaatagcac aatcaatcaa       840
     antcaaagga aaagtagatc tattgaggtt ccaaagatgg acgttacaat ggcgaatagt       900
     gtccctactc tcaatcacca aggcactcct agttttcgtc ttgatttttt tagctttccc       960
     caaaccataa agctgacatg agaattgaac tgttgtatgt tgcttccctc gcaagataag      1020
     tttttttttt atattttgat acaatattga aattggattc tgatctgttt taacgtaagg      1080
     gaataagaaa accatcataa cnccaaacat ttttaaatgc tgagatgttc catttactca      1140
     aatgcaacct accttatttg ttaggctttt ttcgatttcg atttataatg atggtacctt      1200
     ccaagtggtc tcggacataa aagaaaatta ataattcttt tcattctttc tgtccttgcc      1260
     tgtaatgttt agttttatag cctaaatttg aagacatagt tttccgatct atatcaggcg      1320
     attcttttct aattaggtcg ccaacaaaat tacatgttca atcaaatttt ggtatcgtga      1380
     tattcgttca tagtttaagg cttacgttgc ggcaaagtga agttattcag aaagatcaag      1440
     ctgaggttgg tagaattgaa taccgccggt tcaaaattat ttctggntga caaatttgac      1500
     aacgtttcag agctagagta cttacatact tgtcaaacta tgaacgaatg caaaaatggt      1560
     cggttgacat aggctctcag ctantaactg tagaaatgct cctagaacag ctgagaagca      1620
     ggttttgtcc cagttgagtc gtaacgccgg caagaagaac aacatatttg gtccatagct      1680
     gtttggagat gtcttttgaa atagtgttta tggaaaccga gggagtcgag aatgtccatg      1740
     gttagcgtga cataatttgt gctgcgcatc aatgaaaggt cgtcgaaaat ggaagatttg      1800
     gctttccggg taatggtgca ttccggtaaa tggtacattc cggtaaatgg tttttccggg      1860
     taatggtaca ttccggtaaa tggtcttccg gtaaattgca ttccgggtaa tggtattccg      1920
     ggtaatggta tagaatc                                                     1937
//
ID   Shinagawa-8_AAe repbase;    DNA;    INV; 2338 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2338
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 845-845 (2011).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. 7-9 bp TSDs. TIRs are ~100 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus. The insertion of DNA-TA-8_AAe-like
CC   transposon around 610 is excluded from the consensus.
XX
SQ   Sequence 2338 BP; 769 A; 441 C; 435 G; 693 T; 0 other;
     gattctatac cattacccgg aataccatta cccggaatgc aatttaccgg aataccactt        60
     accggaatgt accattaccc ggaaaaaccg tttaccggaa tgtaccattt accggaatgc       120
     accattaccc ggaaagccaa atcttccatt ttcgacgacc attttcagta catttgtata       180
     ttttttttat tctctttcaa tgatgctcag cacaaattat gtcacgctaa ccatggacat       240
     tcttgactcc ctcggtttct ataaacactt tttcaaaaga caaattcaaa cagctatgga       300
     ccaaatatgt ttttcttctt gccggcgtta cgagtcaata ggaacaaagc tattctagta       360
     gaatttctac agttaatagc tgaccacttt tgcattctta catagtttga caagtatata       420
     agttctctag ctctgaaacg tcgtcaaatt tgccaactag aaataatttt gaatcggcgg       480
     tattcaattc taccaacctt agcttgatca ttatgaatag ctgcactttg ccgcaatgaa       540
     tattacgata ccaaaattaa attgcacatg tcatttattt gcgattttat tagaaaggaa       600
     tcgcctgata tagatctatg aaaactatgt cttcaaattt aggctgtaga actaaacatt       660
     acaggcaagg ataaaaagaa tgaagagaat tatttttgtt ttgtatattt gatgtcaaat       720
     attaacgagg tcaatataaa tcgaaaaaaa tcgcctaacg attaaggtgg agatgcatcg       780
     aagccaaacc tcaaattttg aagagcacat atctagagaa ctaaacaccc gttcaagctg       840
     aaaacttaat cgattggtta catccagcgt gtgatcaatc gatcaagttt tcagctcgaa       900
     ccgctgcctg gtttcctaga tttgtgctct tgaaaattta aggattggct tcgatgtata       960
     gtcaccttaa ggttgggtgc attattgtaa atagaaaatc tcagcatttg aaaatgtttg      1020
     gatttatgat ggttttctta ttcccttcaa ataacaattt agaatccatt ttaaatattg      1080
     tatcacaaaa aaactctaat cttgcgaggg aagggacata caacagtgct attctcattt      1140
     tagctttaag gctcccccaa atcaacacga ttttttaagc gacatcgaca aaaaatcgac      1200
     gcgattttgt tgttgagtcg ctgcaagcac tcttatatgg aaccatctag atcgacacga      1260
     cgaaaatcgc tgcgaaattg cgtcgctgtg gcttagacac gctcatcaaa ctgtgcatgc      1320
     agcgcatgtg catgtcgctg tgaccgtaaa aaatcgcctt gatttaaggg agcctttaga      1380
     ggaaatctaa aacatcaaaa cgaaactaag agtgccttgg tgattgagag tagagacact      1440
     attcgccatt gtgacgtcca tctttggatt ccgaaatatt gaacctaatt agatctactt      1500
     ttcatttgaa tttgcttgat tttgctatat actacgaatg tcataactct gaatgtctgt      1560
     accccaaatc caatgccagg ataatatact agaaagaaca gtaagcaatc atattgtcat      1620
     aaatttggtc attttcgact aaacacattt taccaaaaat gccgagatcg gtggaactcg      1680
     aaagaaccgc caaccaaata aagaagggtg aatatcagat ggcctgaaat gggtcattct      1740
     agacaaaagg aatatacgga ggatttgcat tcggttattg acgtttacag aaacgacatt      1800
     cggtggattg acactcggcg aaaaggagca caactaatcg tgttcaaaat tctaatcatt      1860
     gcttattaat taacaattgg acgcttgtag aaccgacggt cgaatgtcaa aagtaaagtt      1920
     acataattgt aaccaaattt agccagttca gccaagacaa gctgcaaaga taagttgaaa      1980
     gaacagctta tttttaaaag aagggtgaat catctatgaa atgcaaatat atgaagatgg      2040
     tgcatattga catgatcaag tatgaagata tcttagactc ctcttcgatg cttaggaatt      2100
     ttgaaggaag aacatcccct gtccattatc gttacaaaat actgacccga atgaccgcaa      2160
     aacggttaaa aggacgttat gaaaaaggcg agaaatagaa aaataatttt ccggtaaatg      2220
     gtccttccgg gtaatggttt tccggtaaat ggttcattcc ggtaaatggt tttccgggta      2280
     atggtcttcc ggtaaattgc attccgggta atggctttcc gggtaatgtc ggagaacc        2338
//
ID   Shinagawa-9_AAe repbase;    DNA;    INV; 1949 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.03, Created)
DT   16-FEB-2011 (Rel. 16.03, Last updated, Version 1)
XX
DE   A non-autonomous DNA transposon family from Aedes aegypti.
XX
KW   DNA transposon; Transposable Element; nonautonomous;
KW   Shinagawa-9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1949
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(3), 846-846 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. 8 bp TSDs. TIRs are ~100 bp long
CC   and composed by degenerate repeats. Related non-autonomous
CC   elements, named Shinagawa, are found in Aedes aegypti and
CC   Culex quinquefasciatus.
XX
SQ   Sequence 1949 BP; 552 A; 385 C; 344 G; 668 T; 0 other;
     ggttctatac catttcccgg aaagacgttt cccggaaatc atttcccgga taccccattt        60
     cccggaaaga catttcccgg aatgacccat ttcccggaat aacccatttc ccggaaagct       120
     actcaatggt aaataaaata agtaatttcc ggttctatac cattttttaa agcaaagtaa       180
     tatcagaacc atgaaaagaa tgtggcaatc tcaagaatac tttgtaaaga gccactagat       240
     tgtcatagat tagtttttcg acgttcatac cagccacgaa atgcatcgaa aagaatgatc       300
     aaagtcaccc cgcacggcgg taatatttca ttgatatttc aatgcttaat tgcatcctcg       360
     tttttcatgt tgaataaaac tatttaaaaa tttaaaaatt tagcaacagg caacgtgatt       420
     ttagctttat tattgaatgt tttgaaaaaa tatatattaa tgattttatc caacatattc       480
     ttattttttt tttaatatat cgaggtttta taatggatcg aaatttttaa cagctaggat       540
     ttttttttca aacaatctga ttccaagctt agttaagtct atttatatat catgtagacc       600
     aattttctag atttcatttc ccttcgaaag gtttccagct gtagacttac ttcaagacta       660
     aataatctca agacatttta agcctctata ccatttttgt gcagcctgtg agaaagtttt       720
     tgcccggtcc attttcgtgt tattctggta taattattat tgttttgccc cactgtctac       780
     attttcattg gataattgcc cttcttccat acataggctg ttctttcgag ttatgctgtt       840
     tgaacaatta ataatgttca aactgatgaa taaacccatc aacatacatt ccagttatag       900
     ctactgccat tttcatagag aatcaccctt cttttggaag tttgccgttc ttccgaatca       960
     taccgacaga aacatttttg gcgagaaggc tgctaatatt gaacataaga aattttccct      1020
     tctttcaaac taaggttatt ctattgagta attggattat atcagggctg ggaatggtaa      1080
     tagtagtaag cttgaatgtc gcgaaactca cgtagctctt cttactacag tagtttgaaa      1140
     acgtgaatct catcaagtag cctattttgg gtgcatgaat tttctaaatc attagtgtca      1200
     tcgaaggctg taaatgcggg aaatatgctc cggaaaatat aacattttcc tacagaagtt      1260
     ttgggttgcc tttagcaacg ggtgttttac tacattctag gcattttgcc tacagcaccg      1320
     ataggctttg aatttcactg gcttcgctga ctgcgatttg ctctgcttgg ctactgtagc      1380
     gtgaattcca tgactttttg caatcctgga ttacacacaa attatgtcac gcacaatttt      1440
     gacatattgg accaactgtc ttcttgtcaa ttttataagg cttgtgacgc ttccttcaac      1500
     tccttccgca cctttggaat gagacactag cttgaacttt atgatgtgat agtgtttcaa      1560
     ttggtatcat cttcttctat tttttctttc tggcatgacg tttcaactgc ttctcggctc      1620
     tatgttcata ttagcactcc cacagttatt aactgagaat attcttcgcc aattgacaaa      1680
     gaaactctat gccctcaaaa gtagaagaat tttccaatcc taaaaaccct cgaccggcgg      1740
     gattggaacc tgctatactt agctacggtc ttgctgaaca gctgctcgtt aatcgctacg      1800
     aattttcggg ttccgcgaaa gtttattttt agtgcattcc gggaagtggc attccgggaa      1860
     atgggtttcc gggaaatggg tcattccggg aaatgatttc cgggaaacgg cattccggga      1920
     aatggttttc cgggaaatgt catagaatc                                        1949
//
ID   SINE-1_BM   repbase;    DNA;    INV; 414 BP.
XX
AC   .
XX
DT   02-AUG-2013 (Rel. 20.10, Created)
DT   02-AUG-2013 (Rel. 20.10, Last updated, Version 3)
XX
DE   SINE from the domestic silkworm; consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-414
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from Bombyx mori.";
RL   Repbase Reports 15(10), 3516-3516 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to the consensus. 7-13bp TSD.
XX
SQ   Sequence 414 BP; 141 A; 65 C; 65 G; 143 T; 0 other;
     ggactttttg gcgggaacgc gaggagtgaa gttgtgtgat ttgttttatt ttgtctattt        60
     agtgtttctt cgggtttaaa tgtgtaataa tggtggttta ttaactgttt aatatctgtg       120
     aaagtgcaca aatgtgggaa aatgaaacaa agccgctgga cgtaacttct cgggatcctc       180
     caaaaagtcc actgaaaaaa tcttagtaaa tgaccaccat tttactgaga ttatatttca       240
     tcccatatca tctcatttaa tttcatccca gttgattaat gtctcaaatt aatcatcttc       300
     atttcatttc actccataat atcatttttc ataaaaatat gaatataaat taaaataaga       360
     catgacttaa aggtctcagt taccaggtca taaaatccct taaaaaaaaa aaaa             414
//
ID   SINE-1_CQ   repbase;    DNA;    INV; 1373 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A SINE family from Culex quinquefasciatus - consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1373
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the southern house mosquito.";
RL   Repbase Reports 11(1), 620-620 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. ~19bp TSDs. This family is longer than usual SINEs,
CC   but it cannot be extended further.
XX
SQ   Sequence 1373 BP; 394 A; 261 C; 257 G; 461 T; 0 other;
     tccttgggca tgagtaagga cctcgacgcc gttagcaatg ttggctttaa aataaaattt        60
     cgtgataata tcacttcccc ccagccaaca tttttgccat gcgaagcggg cctcgacgct       120
     gtgtctaggt ttaattccta gctaggagcc atcagtgtct taagaggtgg tcccaaggcc       180
     gagtaggagt tcatgaagca aattagtcgt ctcccacccc ttttaaattg aaaaatgaac       240
     tctgaaacca gcgcttactc acaacagaaa cagaggcctc ttctaggcat tgtaggatag       300
     aatagatttt gaaatttatt taaaaaaaaa tattattacg tagcattttg atatgtcaaa       360
     atttccatag agtctcggtc aatcaatagt gcgatgatat cggacaaaat tcgttaatct       420
     gttgaactaa cggttttcgg attatggttg tatcgaccat tgttgcgaat cgagggtcta       480
     ctggagcctt gacgatcaaa tggagcctaa catttcaaaa gggcgcatgg gttttgtgaa       540
     caggagtgtg tctccttcac tcaaatgaca gtttacataa ggtataatag agatgcactc       600
     ttgtttgcaa agctctatgc cctaatgaaa tgaatggcat gaaatagtcg tcttaattac       660
     tagtgttcaa cttatgaact gttcatttat gtttattggt ttttggaagc ggcaagactg       720
     gtttaaaaac aagatccttt accttatttg gcgttataat aaaacattcg gggatttgag       780
     attaaattta ctttcagaca gtttagttta ggttgttgat taaagttaga tagttttccg       840
     tagatgaata attggactta aatgattagt tgatttgaac gaagtgtaac atttcattgg       900
     cagatctgtt tctagttgta atgtacgaca agactattga cggacgtgac aggtcggcag       960
     ttagttttca tctttttttc tctagtattt tttatttcct ttaaatttgg aatacatcat      1020
     aggtttcttt tgtatagatc tccgattagt tacattttct tatttaatta actaataatt      1080
     taatttattc cgggccttct tactttgaat cacaatttca gattttcttt attcagtgtt      1140
     aaacttagat taccgtaact gctcaaatca tccaagttct tactactcac atcaacacta      1200
     attttctttc acctcccccc tcccgatccc ctatatcttc cggtggtgtt catttggtat      1260
     gcaatactag ttcggccact accctttttt ccacaagaaa ccggacttgg actgacttga      1320
     ggccgcgtcc cccaccttgc tccgtaaaac gaaaacgaaa acgaaaacga aaa             1373
//
ID   SINE-1_LMi  repbase;    DNA;    INV; 69 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-69
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3191-3191 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 69 BP; 21 A; 19 C; 21 G; 8 T; 0 other;
     gccgggcgcc gtggctcagc gcgcccggtc agggggctga acgccctctg taataaaaaa        60
     aaaaaaaaa                                                                69
//
ID   SINE-2_CQ   repbase;    DNA;    INV; 797 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   11-JUN-2012 (Rel. 17.06, Last updated, Version 2)
XX
DE   A putative SINE family from Culex quinquefasciatus - consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-797
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the southern house mosquito.";
RL   Repbase Reports 11(1), 621-621 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 9 sequences with >97% identity.
CC   14-20bp TSDs. Long TSDs and frequent 5'-truncation indicate it is
CC   a SINE.
XX
SQ   Sequence 797 BP; 232 A; 170 C; 189 G; 206 T; 0 other;
     gtgctagagc cattttagtt cgaaatagtg aaattatggt gaaactcaac tcgttcctgg        60
     aaatgaagaa ttcgaggaaa agttagaaaa attgtgttgt gtaaaagtta catgaagaaa       120
     actttttata atagagtgtg cgacatgctc cactcactgc acagctttgt ttttgttaat       180
     aatcgtagtg atttttgtat tactgaaatt tggttgttga agatgacaca ccgcaagatc       240
     gtgtccgcag ctgccaaggc aaactttcca gaatacactc gccaggatat gtgtcggatc       300
     ggcaagagga agatcaagct gtccgtgatt tgcgacacgc agctggccgt ccggatccgt       360
     acgactaaaa gtagctggca acgtccggat gtttagaagc agccgataaa gaaggctacc       420
     gggattccag aaacttggtg agatctatcc aaactgaaac tgtaaaattc tgcctgctta       480
     tcaacaacca ctaaatacgc gctgatctca tttttgcctt atgggattgg aagtctaaag       540
     ataggtcgag gactcttctg gttcttggtc tatgtttggg cggggccaga caatgcccaa       600
     tgacctcgga attggaccgc aaggagctct gtcattctga aacgggtcat tggaagcagc       660
     gcgagggctg tcaccaccta atacccggga ctgagataac atgtatcagc ataacccaag       720
     actgatacaa attatacttt cccataattt cgctgccggc cagcgggtat tggattggac       780
     cacacacaca cacacac                                                      797
//
ID   SINE-2_LMi  repbase;    DNA;    INV; 145 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-145
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3188-3188 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 145 BP; 57 A; 42 C; 33 G; 13 T; 0 other;
     gccgggcgcc gtggctcagc gcgcccggtc agagggctca acgccctctg taataaaaaa        60
     gctgagccaa caacacaccg aacaagaacg aacaaaaacg atcagcgtcc gcaacgaaga       120
     gaactaccca tagaaaaaaa aaaaa                                             145
//
ID   SINE-3B_CQ  repbase;    DNA;    INV; 341 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   17-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   SINE from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-3_CQ; SINE-3B_CQ.
XX
NM   SINE-3B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-341
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the southern house mosquito.";
RL   Repbase Reports 11(1), 622-622 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identity to consensus.  Putative SINE. ~76% identical to
CC   SINE-3_CQ. Its 5' end is similar to that of a tRNA-derived SINE
CC   family, gecko.
XX
SQ   Sequence 341 BP; 82 A; 81 C; 92 G; 86 T; 0 other;
     tcccatctgc tgcaaccttc catcggatga ggaagtaaaa tgtcggtccc ggccttggtt        60
     gttaggccgt taagtcattc caggtgtagg agtcgtctcc atgccataag tacaaacaac       120
     acaccaaacc aagcctactc cggtggaatc gctggcggcg gttggactcg caatccgaag       180
     gtcgtcagtt caaacactgg ggtggaaggt tccttggagt agaaagaggt ttgggtgctc       240
     tccccattca agccttcgga ctcctaggtt cgagcagaaa cttgcaatag agaccacaaa       300
     agacccgggg gtcgttaatg tggatggttt gatttttttt t                           341
//
ID   SINE-3_CQ   repbase;    DNA;    INV; 418 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   17-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-3_CQ.
XX
NM   SINE-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-418
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 595-595 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identity to consensus.  Putative SINE. Present in over
CC   10,000 copies in the genome. Its 5' end is similar to that of a
CC   tRNA-derived SINE family, gecko.
XX
SQ   Sequence 418 BP; 97 A; 92 C; 122 G; 107 T; 0 other;
     gccgggaccg tggtgtaggg gtaagcgtga ttgcctctca cccagtcggc ctgggttcga        60
     tcccagacgg tcccggtggc atttttcgag acgagatttg tctgatcacg ccttccgtcg       120
     gaagggaagt aaatgttggt cccggactaa cctaaaaaag gttaggtcgt tagctcagtc       180
     caggtgtagg agtcgtctcc ctgggtcctg cctcggtgga gtcgctggta ggcagttgga       240
     ctaacaatcc aaaggtcgtc agttcgaatc ccggggtgga tggaagctaa ggtgtaaaaa       300
     gaggtttgca attgcctcaa caatcaagcc ttcgaacacc tagtttcgag taggaatctc       360
     gcaatcgaga acgccaaggc aatgctgtag agcgaataat ttgatttttt gatttttt         418
//
ID   SINE-3_LMi  repbase;    DNA;    INV; 230 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-230
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3192-3192 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 230 BP; 44 A; 58 C; 74 G; 54 T; 0 other;
     gccggccgcg gtggccgagg ggactgaggc gcgccggccg cggtggccga ggggactgag        60
     gcgctccagt cacggtctgc acggccacta cggtcggggg ttcgaatccc ccctcgggca       120
     tggatatttg tgccgtcctt agtttaggta gttcataagt agtttgtaag tttagggact       180
     gatgaccccg tagttaagtc ccataagcta tacaaacatt tgaacatttt                  230
//
ID   SINE-4_CQ   repbase;    DNA;    INV; 597 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   17-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-4_CQ.
XX
NM   SINE-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-597
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 596-596 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identity to consensus.  Putative SINE. It is ~68% identical
CC   to SINE2-1_CQ. The 5' end is similar to the direct sequence of
CC   tRNA-Thr and the middle region is similar to the complementary
CC   strand of tRNA-Arg.
XX
SQ   Sequence 597 BP; 155 A; 140 C; 130 G; 172 T; 0 other;
     gaccggcccg tggcttaatg gctacggctc ccgcctcata agcggaaggt tccgggttcg        60
     attcccgacc ggtctccttg aaattattcg actataattg aactttgaat atgaacaaaa       120
     aacgcatgga atcaggtggg attcgaactc acacctttgg attggtagtc agatgctcta       180
     gccactcggc caccgagggg ttgacacccc ttgagtgaat taatccgtag tggtgaaata       240
     atgtcacaag gtcatttact atataataca acaatccctt tcccaacgat tcccctacac       300
     acactacaca ccatattcta taaataactc gaagtggttg gtacggtatg tcctcacttc       360
     ttcttcttcc cctgatgatt ccatgaaatg tgggttccgt tcatagaatc tgtctcttgc       420
     ggttaatgca acgcagtagg ccgggccgct ttagtgagtg taatacattt cgggggttct       480
     cgaaagtact gcaatcatta ataatgacaa gaaagaactt gaggcgtaat ctaaccataa       540
     gttcttcccg gatgctttct tcggactggc tgcgcttgtg ttcgattaga ttagatt          597
//
ID   SINE-4_LMi  repbase;    DNA;    INV; 368 BP.
XX
AC   .
XX
DT   09-JUN-2014 (Rel. 19.11, Created)
DT   09-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-368
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3193-3193 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus. Composed of Lm1 and a inserted
CC   SINE-2_LMi.
XX
SQ   Sequence 368 BP; 114 A; 95 C; 94 G; 65 T; 0 other;
     gccggccgcg gtggccgagg ggacgccggg cgccgtggct cagcgcgccc ggtcagaggg        60
     ctcaacgccc tctgtaataa aaaagctgag ccaacaacac accgaacaag aacgaacaaa       120
     cacgatcagc gtccgcaacg aacagaacta cccatagagc aaaaaaaaaa aaaaaaaaaa       180
     aaaaaaaggg gactgaggcg ctccagtcac ggtctgcacg gccactacgg tcgggggttc       240
     gaatcccccc tcgggcatgg atatttgtgc cgtcctagtt cgtaagtagt tcataagtag       300
     tttgtaagtt tagggactga tgaccccgta gttaagtccc ataagcttta caaacatttg       360
     aacatttt                                                                368
//
ID   SINE-5_CQ   repbase;    DNA;    INV; 247 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   22-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-5_CQ.
XX
NM   SINE-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-247
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 597-597 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identity to consensus.  Putative SINE. Present in ~10,000
CC   copies in the genome.
XX
SQ   Sequence 247 BP; 52 A; 62 C; 71 G; 62 T; 0 other;
     gcctcgtggc gcggtggtta gcggcttcgg ctgccgatcc ctaagttgct atggggcgcg        60
     ggttcgattc ccgccttatc ctcctggcct tctatcggat ggggaagtaa aacgtcggtc       120
     catttgcgta aaagaggttt tgggtgactc accacacata accttcggac gcctagaaat       180
     gagcagaaac ttgcaacaga gcccacaaaa gacccggggg tcgttaaagt ggattgcttt       240
     gcttttt                                                                 247
//
ID   SINE-5_LMi  repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-399
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3189-3189 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 399 BP; 97 A; 115 C; 112 G; 75 T; 0 other;
     acccgctcgg ttagccgtgt ggtctaacgc accgctttcc gagacgggga ggcgtaccgg        60
     ccccggttcg aatccgcccg gcggattaac gaagggggtc ggagtgccgg ccagcctgga       120
     tgtggttttt aggcggtttt ccacatcccc ctaggtgaat accgggctgg tccccaagtc       180
     ccgcctcagt tacacgattc gcaaacattt cataacactt tacactttca cacatataac       240
     actatacgca gacatttggg gtacacattt cctcccgggg ggcagggggt ggcggcagga       300
     agggcatccg gccaccccgt caatactaac acgccaaatc cgcaataaca aagccgaccc       360
     tgcatgtgcg ggaaaagggc tgaagagaaa gaaagaaag                              399
//
ID   SINE-6_CQ   repbase;    DNA;    INV; 225 BP.
XX
AC   .
XX
DT   27-DEC-2010 (Rel. 16.01, Created)
DT   17-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE-6_CQ.
XX
NM   SINE-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-225
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 598-598 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identity to consensus.  Many are 100% identical.  Present in
CC   >6,000 copies in the genome, very likely to be active.
CC   The 5' end is ~72% identical to that of a tRNA-derived SINE
CC   family, Bov-tA1.
XX
SQ   Sequence 225 BP; 37 A; 56 C; 71 G; 61 T; 0 other;
     gtgggtctcg tggcgcaggg gtagcggctt cggctgccga tcccgatgat gctatgagac        60
     gcgggttcga ttcccgcctt atccactgag cttctatcgg atggtgaagt aaaacgtcgg       120
     tcccggtttc tcctgtctcg tcagaggcgc tggagcagaa atcccacgtt agaggaaggc       180
     catgccccgg ggggcgtagt gccaatagtt tcgttttttt ttttt                       225
//
ID   SINE2-1B_AA repbase;    DNA;    INV; 218 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.01, Created)
DT   12-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   SINE family - a consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE2-1B_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-218
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-218
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 513-513 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 218 BP; 35 A; 51 C; 65 G; 67 T; 0 other;
     gtgggcttcg tagccgtgcg gttagtgtca ccaggcattt agccgcatcg tgctagggag        60
     tgtgggttcg attcccgcct caggccggta aacttttcgt gaggactgtt ttccgactgt       120
     gccactgggc gttgcatgct agtccgttgt ctagtgtggt gcttccttca aagggcataa       180
     atgcccactg gaagcattaa cgtgtcagtg tctttttt                               218
//
ID   SINE2-1_AA  repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   12-APR-2019 (Rel. 26.01, Created)
DT   12-APR-2019 (Rel. 26.01, Last updated, Version 2)
XX
DE   SINE family - a consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE2-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-220
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-220
RA   Bao W.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito
RT   genome.";
RL   Repbase Reports 21(1), 515-515 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 220 BP; 40 A; 48 C; 65 G; 67 T; 0 other;
     gtgggcttcg tggccgtgcg gttagtgtta ccaagcattt agccgcatcg agtcaagggg        60
     tgtgggttcg attcccgctt cagtccggaa aacttttcgt caggaaggtt tttcgactgt       120
     gccactgggc gttgcatgct agtccgttgt ctagtgtggt gcttccttca aagggcaaat       180
     cgtccactgg aagcattaac gtgtcggtgt ctttttaaaa                             220
//
ID   SINE2-1_AP  repbase;    DNA;    INV; 1770 BP.
XX
AC   .
XX
DT   18-MAR-2009 (Rel. 14.03, Created)
DT   18-MAR-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   A family of SINE retrotransposons - a consensus sequence.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Interspersed repeat; SINE2-1_AP.
XX
NM   SINE2-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1770
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(3), 661-661 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   Elements are 93% to the consensus. The 5'- 10-20 bp is the
CC   internal box-A found in tRNA. gene.
XX
SQ   Sequence 1770 BP; 618 A; 206 C; 229 G; 716 T; 1 other;
     ttagattctg agtggaacga tgaatgtatt gattttacaa tgatgtgtgt ttttttttta        60
     tttttttttt tattttattt tttttttttt gtgtctgtca tcacctttta ggacagtaaa       120
     agtgcttgga ttttcttcaa cagtatcttt tctgatagga aagtgaatct agttggtact       180
     ttgggggggt caaaagtaat ttaaaatttt tccaatagtt ttcaaaagcg ccgtgaaaaa       240
     caaaagaaaa attaaggaaa aacgggaatt tttacgcaaa atctgttttc gagaaaattg       300
     attttggttt ttggtgtaac tttaaaacaa atgaccgtag atacatgaaa ttttcactgg       360
     ttgtttatat ttccattttc tatacatgat aaaattttca aaatattttg atttgttttg       420
     aactgtttag ggacattttc agtttccaat tttattagtt tttttttcta tgaatgtcaa       480
     taaaacttta tttgttgagt aaaaatactt gaaaatttaa tacaaggctc ctactatatt       540
     gttacaatga catttgaaaa atattaaaaa tccttagtca caggtttttt tttattagca       600
     tttaaagttc aaaaattgac aaaatatgta aaaatcacga aaattagcaa attattttga       660
     gttaagaatt cgtaaaaatt tttcttttta aatctaagat ttgaaaatgt aatacaagat       720
     tcctcataat attgtctacc tttatcaaaa aaaaaaaatg tctacaagaa agtcaaatta       780
     aatttttatg agcgtttgaa attcatattt ttacaacatt tgatattcac tcgatttctc       840
     atgtgacgat tttcttattt tattgtaatt aaaaaacgaa tgactgtaga tatttgaaaa       900
     tttcactgaa tgtttatatt atcattttct atacaccata aaattttgaa aatattttga       960
     ctctttttga gctgtttacg gacattgtca gttttcaatt tttttagttt ttttttctat      1020
     aaatatcaat aaagttttat ctgttgggcc aaaaagtgta aaaatttaat acaaggctcc      1080
     tgatatattg ttacaatagc agttgaaaaa tattaaaaat acataggcac aatttttttt      1140
     tataagcatt taaagatcga attttgacaa aatttatcaa atttaaaatt gaataattat      1200
     tttgtagtta aaaatttata aaatgttcaa cttttatatc taaggattga aaatttaaaa      1260
     caagattcca cgtaagtagt taattctgtt accaaaaaat ctaaaaaata cataagcaca      1320
     gtttattttt atagtcattt taagttcaaa tttggacgaa attacatatt aaaaaaccta      1380
     gaataactat tttagttatt ttgttgtgat tgtataatat tattcgtggg tatacttgaa      1440
     acttctaaag tatactatta tatatctatg atagtatcac ggtttgttgt tgatgtataa      1500
     cgcgttataa gtacctaatg gatattgtga tatgattaat ttggaattta ttataggtac      1560
     ctattatagg tcaatttttt tttaatacca tagataagta tatmtataat aaatatgtct      1620
     tatacctaga ctgacatacc gtctccgctc agaatcgttt ttcttataca atgatattat      1680
     atcattgaat tcaaatttaa taccatccat tatacagtga cccacttgta acctactgta      1740
     cagcagagcg acatccactt acccaccttt                                       1770
//
ID   SINE2-1_BTa repbase;    DNA;    INV; 209 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.05, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_BTa.
XX
NM   SINE2-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-209
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(5), 617-617 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to the consensus.
XX
SQ   Sequence 209 BP; 53 A; 40 C; 70 G; 46 T; 0 other;
     gtcggcctcc tatggtgtag tggttgtagc gctagctcta tgatcgggag gtcccgggtt        60
     cgattcccgg ccaggcgacc cgagtttgat ggtctcaaac aatggttgcc tgggactggt       120
     tcggtaggga cggagggggg acgggactta aagcgcggga ttagcccttg tgggctactt       180
     gaagtagtaa aaaaaaaaaa aaaaaaaaa                                         209
//
ID   SINE2-1_CoFl repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   03-OCT-2019 (Rel. 24.11, Created)
DT   03-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   SINE from the Copidosoma floridanum genome - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE2-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-431
RA   Kojima K.K.;
RT   "SINEs from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2417-2417 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. >10-bp TSDs.
XX
SQ   Sequence 431 BP; 174 A; 61 C; 96 G; 100 T; 0 other;
     gagctcgtcg ttggctcagt ggttagcatg ctagccaccg aaacaacaca gctcaagggg        60
     tcgtgggttc gattcccggt cggggtactc agattttttc tgatggttct tgccgggtat       120
     cgaattcatg aaaccgactt aggataaaga tttagttttt aagatgaaaa gaaaaataaa       180
     aaagcgattg aaaaataaag aattgtgacg agctctcgat aaccggtcct gcgtgaccgg       240
     ggagataaaa aagatatgat atgcgaataa taaagaacga aaatgtaatg acaagcgaaa       300
     ataagagaaa tgtataatga tacgatgaaa aacgacatgt taaaaagaca atgtaaatgt       360
     tgaatgaata aagacagtgt acatacccat agtaggtcag tacactataa tataaaaaaa       420
     aaaaaaaaaa a                                                            431
//
ID   SINE2-1_CQ  repbase;    DNA;    INV; 684 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A SINE family from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-684
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the southern house mosquito.";
RL   Repbase Reports 11(1), 623-623 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. ~19bp TSDs.
XX
SQ   Sequence 684 BP; 182 A; 158 C; 171 G; 173 T; 0 other;
     ggagcggccg tggctgactg gttacggtgt tcgctttgta agcgaatggt tctgggttcg        60
     atgcccatct gctcccaacg agaaagttaa gaacacataa atttgaaatg atgaatatga       120
     acgaaaaatc aaagtcgctc gaggcggggt tcgatccccc gtcctttgga ttggtaagca       180
     aaaatgctaa ccactaggcc atgacgactt ggtgagcgtg gactggaatt aggaatactg       240
     ttacagagag cgagttgtgg cgctataacc acggcaaata gtgtccaggg cattcgtgga       300
     aatacaatgt cccatcccag agggtcccgg agtaccaaac cttcttagca tggtgctccc       360
     aacgaataca accaaaatct cggagcgtat ggtggtgtgt ccccacgctt cttcctcccc       420
     tgtcgattca gaattgtgtt gttgttcgaa cactcagtgc tcaaactcaa cccaattacg       480
     agtcatctct gcgatacggc tttacgcagt aggcctggcc gctttaacgc ttgtgatgtt       540
     tcaatgcatt ccgatgcaat ggcgcactac aaatgttaat aaatgacaag aagagtgcta       600
     ggcgtcatct aacctaaggc actctccagg atcccttcga aagattggct gcgctagggt       660
     ctgattagat tagattagat taga                                              684
//
ID   SINE2-1_LMi repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   05-JUN-2014 (Rel. 19.11, Created)
DT   06-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-316
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3194-3194 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 316 BP; 75 A; 83 C; 76 G; 82 T; 0 other;
     gtgcgcctcg gttgcacagt ggtagagtgc cagactacaa atccaaaggt cgcgggttcg        60
     atccccgcca ggtcctagga tttttatctg tcactttcca cttctttcac ctctggcagt       120
     attgctcatg tgaaaaatac cgagtagcac cgtggttcgg aacccacgtt aaactgtagg       180
     tccccctata actggctggg taagtcagtt cgaaggtcgg aggaaggcaa cggcatacca       240
     cctccaaaca ggaccatgcc tagtaaagca ctgtggtgtt caaaccaatc ttcggattgt       300
     tgactgcttt accttt                                                       316
//
ID   SINE2-1_PPo repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   SINE from Papilio polytes: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-315
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the common Mormon genome.";
RL   Repbase Reports 15(9), 3205-3205 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.
XX
SQ   Sequence 315 BP; 79 A; 66 C; 84 G; 86 T; 0 other;
     ttgagagcgt cggtggctca gtggtttgag cacttgactt gtaatctaca ggtcttgggt        60
     tcgaatcccg ccatgtacca atgtgatttt cgaattttca tatgtacata atttacccga       120
     cgttcttacg gtgaaggaaa acatcgtgat gcaacctgca catatcggcg aagaaattca       180
     aagatatgtg tgaagtcaac caacccgcac ttggccagcg tggttgacta tggcctagtc       240
     accccatatt agggtaggct ccgagcccct cggtggggac gtatagtgag ctggtgatga       300
     tgatgatgat gatga                                                        315
//
ID   SINE2-1_PXu repbase;    DNA;    INV; 308 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-308
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3203-3203 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.~94% identical to SINE2-1_PPo.
XX
SQ   Sequence 308 BP; 77 A; 69 C; 79 G; 83 T; 0 other;
     gagcgtcggt ggctcagtgg tcaagcactt gacttgcaat ctgcaggtcc tgggttcgaa        60
     tcccgccatg taccaatgtg tttttcgatt tccgatttac atatgtacat ttatccgacg       120
     ttcttacggt gaaggaaaac atcgtgatgc aacctgcaca tatctgagaa gaaattcaaa       180
     gatatgtgtg aagtcaacca acccgcactt ggccagcgtg gttgactatg gcctaatcac       240
     ccttaactta gggtaggctc cgagcccctc ggtggggacg tatagtgagc tgatgatgat       300
     gatgatga                                                                308
//
ID   SINE2-1_RPr repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   SINE retrotransposon seqeunces: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-220
RA   Bao W. and Jurka J.;
RT   "Retrotransposons from insects.";
RL   Repbase Reports 15(10), 3506-3506 (2015).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 220 BP; 56 A; 44 C; 55 G; 65 T; 0 other;
     ggcgccacgg tagccgagcg gttagaggcg agacctgcga agctaatatg tattgtggta        60
     ctgggttcga ttcccggtct taggccttgg attttattta atggttaata aaagaaattt       120
     acagtaaagt atgtttgcta gtcgcctccg tccacgacac ctaattggta gttggacgtt       180
     aagccccgcc tgaaaaaata ggcgattact ttactttact                             220
//
ID   SINE2-2_AP  repbase;    DNA;    INV; 1998 BP.
XX
AC   .
XX
DT   18-MAR-2009 (Rel. 14.03, Created)
DT   18-MAR-2009 (Rel. 15.12, Last updated, Version 2)
XX
DE   A family of SINE retrotransposons - a consensus sequence.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Interspersed repeat; SINE2-2_AP.
XX
NM   SINE2-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-1998
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(3), 662-662 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1998 BP; 749 A; 243 C; 248 G; 758 T; 0 other;
     ttagattctg aacgaagtga tgaatgtatt gattttacaa tgatgtgtgt tttttttttt        60
     tttttttttt gtgtctgacg acaacttttg gagcagtaaa aatgcttcga ttttcaaaag       120
     ttgtaccttt tctgaaagga aagtgaatct agttggtact ttggggggtc aaaagtgaaa       180
     atttcccaat acttttcaaa agcggcagga aaaaccttaa aaaaataacg gaaaaacgcg       240
     aatttttacg caaaaccaat ttttgacaaa aacgaaaact taattttact gtaactcaaa       300
     aaataattat tgtaagcact tgaaatttgc aacagatgtt tatattagcg ttgtctatac       360
     agggttaaat tttcaaagtg tttcgacttt ttttgagcta tttatagaca aatgaaattt       420
     tcaatttttc taagtatttt tttttaaaat aacgataaaa aatttttggt tggatagaaa       480
     actttgaaaa tttaatacaa ggtttcttat aagttgttct cacagtgata aaaaaaaatc       540
     caaaatcgtt agtcacaatt tttttttata agtgcttaaa gtttaaattt atacgaaata       600
     tgtcaaaatt gcgaaaattt gcaagtaatt ttgtggttga aaaatcgtaa aatttttttc       660
     ttttataact aagcttttaa aatttggtac aaggttctcc ataagttttt ctttaaatat       720
     ctgtaaaaaa aactcaaccg gactaagaca aaaaattttt aggagtgttt gaaatttaaa       780
     tttttacaaa accgcattaa ataacggttt agcctcaaac gatttttgat atttgttatt       840
     attcaaaaag tatgagtcgt agacacttga aaattttacc agttgtttaa attgacattt       900
     tctttatata gttttatttt caaaatattt cactaatttt taatctattt ataggcaatt       960
     gaaataatcg attttttttg attttttttt tataaatgtt gataaaaaaa aattagctgg      1020
     gacaaaatac ttgaaaattt aatagaaggg tccacatatg ttgttctaac tcccattcaa      1080
     aaattataaa aatacatagg cacaattttt ttttataagc atttaaagtt caaattttga      1140
     ctaaatacgt aaaaattacg gcaatgttca aataatctta aacagaaatt cataaaagtt      1200
     tttcttttta attctaagat ttggaaattt aatacaaggc tcctaacata tttttacaat      1260
     agcagttgca aaataaaagg aatacattgt cacaattttt atttataagc atttaaagtt      1320
     caaattttga caacatatta tgtaaaaatc acgaaaattc gtaaattatt ttatgctaga      1380
     aattcataaa aaattttcct tttatatcta agatttcaaa atttaataca aggctcataa      1440
     tatattttta caatagcaat tgaaaaataa aagaaatata tagtcacgat ttttttttta      1500
     taagcattta aagttcaaat tttgactaaa tacgtaaaaa ttacggcaat gttcaaatta      1560
     tcttagacag aaattcataa aagtttttct ttttaattct aagatttgga aatttaatac      1620
     aaggctccta acatattttt acaatagcag ttgcaaaata aaaggaatac attgtcacaa      1680
     tttttattta taagcattta aagttcaaat ttatacgaaa tatgtcaaaa ttgcgaaaat      1740
     ttgcaagtaa tttagtggtt gaaaaatcgt aaaaattttt tcttttataa ctaagttttt      1800
     aaaatttggt acaaggttct ccataagttt ttctttaaaa ataatatatc ctagactgac      1860
     aaatcatctc cgttcagaat cgtttttcgt atacaatgat ataatatcat tggattcaaa      1920
     tttaattcca tccattacag taacccactt gtaacctact gtacagcaga gcgacatcca      1980
     cgacttaccc gccttttt                                                    1998
//
ID   SINE2-2_CoFl repbase;    DNA;    INV; 686 BP.
XX
AC   .
XX
DT   03-OCT-2019 (Rel. 24.11, Created)
DT   03-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   SINE from the Copidosoma floridanum genome - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE2-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-686
RA   Kojima K.K.;
RT   "SINEs from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2418-2418 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. >10-bp TSDs.
XX
SQ   Sequence 686 BP; 164 A; 150 C; 218 G; 153 T; 1 other;
     gagcggcgtt ggctcagtgg taagcgtgct tgttactgat acaacgcagt tctaggggtc        60
     gtgggttcga ttccgggtga atgcagattt tttcaaaaac tgttttcatc gggaaaagtt       120
     cctatgwaac cccggctgtt tcggggcggg tttttccgtg gaattttcct tcagagtaat       180
     tccagggttt tttccttgcc ccacaggtct tcgggcctgg gtgaatgcga aacagtgtta       240
     gggctatagg tagggattag cggacccgat gccaggcgtc gggcagggat cgccggcctt       300
     accggcgagg agtggcccct gaaacaacgg ggcttctccg gggatgctaa ttagcctgga       360
     tccgatgctt cggcagagag cgccggctta accggcgagg agtggacgtc ctggaataat       420
     ggagtcttct ccggggaaag gctacacagt ggtgagtgga cccgatgcac catcggtgca       480
     gagagtgtca gcttaactgg caaggtgttc caccggagat actcacactg tgcccatgga       540
     ttcaggtagg aggcgaggaa aaaggtttag agatgggtgt ggcaatacac ccccacacat       600
     aggtggtgag tgggtggccc ccgcgactag gccaagtagg ctgtcgtggt aacccggtat       660
     aaaaaaaaaa aaaaaaaaaa aaaaaa                                            686
//
ID   SINE2-2_CQ  repbase;    DNA;    INV; 244 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A SINE family from Culex quinquefasciatus - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-244
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the southern house mosquito.";
RL   Repbase Reports 11(1), 624-624 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >96%
CC   identity.
XX
SQ   Sequence 244 BP; 56 A; 63 C; 68 G; 57 T; 0 other;
     tgtcccgccc gtgtggatca atcggaccgc gcactggacc cacaatccag aggttgctgg        60
     ttcgaatccc gcggcgggcg ctctaaaatt ctaagtgtaa atatgggtat ccggcgccgt       120
     cgctccgtgc cgtactcaaa cacttaggag cccagggcgg cgaagtcctt gtagttaaaa       180
     ggaagacact agtggttggt actagcaatg gtggccgaca gctataaagt caacttcgtt       240
     tttt                                                                    244
//
ID   SINE2-2_LMi repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   06-JUN-2014 (Rel. 19.11, Created)
DT   06-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-255
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3195-3195 (2014).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 255 BP; 54 A; 70 C; 71 G; 60 T; 0 other;
     gtccgcctcc gtagtccagt ggacagcgtg gttggttgcc acgcaggggg cccgggttcg        60
     attcccggtc gggtaggaga ttttctccac tcggggactg ggtgttgtgt cgtcctcatc       120
     atcattccat catcattgac atgcaagtcg ccgaagtggc gtcagataaa gagacttgca       180
     ccaggcaggc tgaacacgac cccagttggg gtctaacggt cataaatgcc acacgatcat       240
     catcatcatc atcat                                                        255
//
ID   SINE2-2_PPo repbase;    DNA;    INV; 184 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   SINE from Papilio polytes: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-184
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the common Mormon genome.";
RL   Repbase Reports 15(9), 3206-3206 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
XX
SQ   Sequence 184 BP; 65 A; 33 C; 37 G; 49 T; 0 other;
     ttaaagcgcc aatagcctaa tggtttgggg tacggactac cgatcttgcg gtcgagggtt        60
     cgaatcccgc cattcgacta ttgtcgtgaa ccatatccta gcacaagcct agagcttagt       120
     tggaatggtt aaaggaaata ttagtaaatt aacaaaaatc tactaatatt ttaaaaaaaa       180
     aaaa                                                                    184
//
ID   SINE2-2_PXu repbase;    DNA;    INV; 179 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-179
RA   Kojima K.K. and Jurka J.;
RT   "SINEs from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3204-3204 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.~91% identical to SINE2-2_PPo.
XX
SQ   Sequence 179 BP; 65 A; 31 C; 36 G; 47 T; 0 other;
     taagcgtcaa tagcctaatg gttaagggta cggatttccg atcacgaggt cgggggttcg        60
     aatcccgcca ttcgactatt gtcgtaaacc atatcctagc acaagcctag agcttagttg       120
     gaatggtaaa agaaatatta gtaaatttac aaaaaatctg ctaatattta aaaaaaaaa        179
//
ID   SINE2-2_RPr repbase;    DNA;    INV; 735 BP.
XX
AC   .
XX
DT   26-JUL-2012 (Rel. 20.10, Created)
DT   26-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   SINE retrotransposon seqeunces: consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-2_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-735
RA   Bao W. and Jurka J.;
RT   "Retrotransposons from insects.";
RL   Repbase Reports 15(10), 3507-3507 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 735 BP; 205 A; 145 C; 172 G; 213 T; 0 other;
     tagtcgccac ggtagccgag cggttagagg ctagacccgc aaagctaaga tgtattgcgg        60
     tactaggcta tattccccag tctatacctt taatggttaa tatgagaaat ttacagtaaa       120
     gtatgtttgc tagtcgccac gatagccgag cggttagagg ctagacccgc aaagctaaga       180
     tgtattgcgg tactaggcta tattccccgg tctatacctt taatggttaa tatgagaaat       240
     ttacagtaaa gtatgtttgc tagtcgccac ggtagccgag cggttagagg ctagacccgc       300
     aaagctaaga tgtattgcgg tactaggcta tattccccag tctatacctt taatggttaa       360
     tatgagaaat ttgcagtaaa gtatgtttgc tagtcgccac ggtagccgag cggttagagg       420
     ctagacccgc aaagctaaga tgtattgcgg tactaggcta tattccccag tctatacctt       480
     taatggttaa tatgagaaat ttgcagtaaa gtatgtttgc tagtcgccac gatagccgag       540
     cggttagagg ctagacccgc aaagctaaga tgtattgcgg tactaggcta tattccccgg       600
     tctatacctt taatggttaa tatgagaaat ttacagtaaa gtatgtttgc tagtcgcctc       660
     cgtccacgac acctaatttg gtagttggac gtaaagcccg cctgaaaaaa taggcaatta       720
     ctttactttt ttttt                                                        735
//
ID   SINE2-3_CoFl repbase;    DNA;    INV; 568 BP.
XX
AC   .
XX
DT   03-OCT-2019 (Rel. 24.11, Created)
DT   03-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   SINE from the Copidosoma floridanum genome - consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE2-3_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-568
RA   Kojima K.K.;
RT   "SINEs from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2419-2419 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. TSDs are not obvious, but appear
CC   sometimes longer than 10 bps. The 3' terminus is (CAATA)n.
XX
SQ   Sequence 568 BP; 169 A; 104 C; 149 G; 146 T; 0 other;
     gagcttcgat ggcttagtgg ttagcgtgct agcctcctag ccggagatac tcgaggggtc        60
     gtgggttcga atcccgtcga aaattatcga gattttttct cggtcttttc cgatgggatg       120
     agtatccagg atgccgaaac accacttatc cgaattttaa aacaaatagt ggatttttct       180
     ggtgatgtct ggacctccag gggcttcctt tgcgaaggaa agccaacacc tggccagctc       240
     atcgggtaaa gtcactgttg gttataaaaa ggtcggtaca gcgagttaga tggtttattg       300
     gaaaaatatc tttccattaa acttgataat agctggggtg tgcttgagac aatcgctgcg       360
     ccctgtaaat agtacccagt aggatggatg accgagtcgt ctgaggggaa ctttgcaagg       420
     ggcccgcacg aaagactcgc atacttgggg aaataggatg gtaattacgg aaaaagaaaa       480
     agaaaaggta aagattatag ggacataaga tacgtaaaaa ccctgcgaat gggtatacgt       540
     tggaatctta atacaataca atacaata                                          568
//
ID   SINE2-3_LMi repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   18-JUN-2014 (Rel. 19.11, Created)
DT   18-JUN-2014 (Rel. 19.11, Last updated, Version 1)
XX
DE   SINE retrotransposon.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE2-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-259
RA   Bao W. and Jurka J.;
RT   "SINE retrotransposons from the migratory locust.";
RL   Repbase Reports 14(11), 3190-3190 (2014).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
SQ   Sequence 259 BP; 56 A; 80 C; 58 G; 65 T; 0 other;
     accgagcgag gtggcgcagt ggtaacacac tggactcgca ttcggaagga tggtggttca        60
     aatccacctc cggccatcca gatttaggtt ttccgtgatt tccctaaatc actccaggca       120
     aatgccggga tggttccttt gaaagggcac ggccgatttc cttcccatcc ttacccaaat       180
     actccgagcg taagctccgt ctctaatgac cacgctgtcg acgggacgtt aaactccaag       240
     cttccttcct tccttctcc                                                    259
//
ID   SINE3-1_TC  repbase;    DNA;    INV; 262 BP.
XX
AC   .
XX
DT   28-NOV-2007 (Rel. 12.11, Created)
DT   29-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   This is a recently retrotransposed family of SINE3 elements - a
DE   consensus sequence.
XX
KW   SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINE3-1_TC.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-262
RA   Kapitonov V.V. and Jurka J.;
RT   "SINE3-1_TC, a family of SINE3 retrotransposons from the red
RT   flour beetle genome.";
RL   Repbase Reports 7(11), 1180-1180 (2007).
XX
DR   [1] (Consensus)
XX
CC   This is a first family of SINE3 retrotransposons identified in
CC   insects. SINE3-1_TC contains a pol III internal promoter (pos.
CC   47-93) derived from 5S rRNA (81% identity to the 5S rRNA present
CC   in the beetle genome). SINE3-1_TC elements are flanked by 8-10 bp
CC   long target site duplications. The 3' terminus is composed of the
CC   (ATATTT) microsatellite. Based on presence of TSDs and the
CC   3'-microsatellite, it is expected that SINE3-1_TC elements were
CC   retrotransposed by an endonuclease and reverse transcriptase
CC   expressed by a I-like non-LTR retrotransposon. This family
CC   includes >20 copies that are only ~1% divergent from the
CC   consensus sequences.
XX
SQ   Sequence 262 BP; 68 A; 54 C; 64 G; 76 T; 0 other;
     agttagttgc ataggttagc tgatttcata gattataatt aatctatgaa gttaagcagc        60
     tctgaccccg gtcattcctt ggatgggtga ccggataatg taatgccaaa acatcgcaac       120
     taactcgtct ttcggaggag acgttaagcc gtcggtcccg gtcactacta gtggtcgtta       180
     ggtcaggtca gaggctgtag atgcgacctg aaaactctgg cacttgggtg atggcattac       240
     caccatacgc atatttatat tt                                                262
//
ID   SINEX-1_AG  repbase;    DNA;    INV; 206 BP.
XX
AC   .
XX
DT   05-MAR-2004 (Rel. 9.02, Created)
DT   03-DEC-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   SINEX-1_AG is a nonautonomous non-LTR retrotransposon - a
DE   consensus sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; reverse transcriptase;
KW   nonautonomous non-LTR retrotransposon; SINEX-1_AG.
XX
NM   SINEX-1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-206
RA   Kapitonov V.V. and Jurka J.;
RT   "SINEX-1_AG, a family of nonautonomous non-LTR retrotransposons
RT   from African malaria mosquito.";
RL   Repbase Reports 4(2), 44-44 (2004).
XX
DR   [1] (Consensus)
XX
CC   SINEX-1_AG is a family of nonautonomous non-LTR retrotransposons.
CC   The SINEX-1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~2000 copies, which are over 90% identical
CC   to the consensus. SINEX-1_AG copies are usually flanked by ~10-bp
CC   target site duplications. The genome harbors over 10,000 copies
CC   of SINEX-1_AG, including those that are 30% divergent from the
CC   the consensus sequence. This family is quite unusual because
CC   there is no similarity of SINEX-1_AG to any known tRNAs or other
CC   RNA with internal pol III promoters. It is possible that
CC   SINEX-1_AG encodes a new type of the internal pol III promoter.
XX
SQ   Sequence 206 BP; 56 A; 56 C; 52 G; 42 T; 0 other;
     tgggccggtc tggtggtaca gtcgtcaact cgtacgactt aacaacatgc ccgtcatggg        60
     ttcaagcccc gaatagaccg tgcccccata cgtaggactg actatcctgc tatggtaaca       120
     ataagtcact gaaagccaag ccccacttca ctagtgggta caggcaggcc ttgaccgaca       180
     acggttgttg tgccaaagaa gaagaa                                            206
//
ID   SINEX-2_AG  repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   28-FEB-2009 (Rel. 14.02, Created)
DT   25-SEP-2013 (Rel. 18.09, Last updated, Version 2)
XX
DE   A nonautonomous non-LTR retrotransposon - a consensus sequence.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINEX-2_AG.
XX
NM   SINEX-2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-195
RA   Jurka J.;
RT   "A family of nonautonomous non-LTR retrotransposons from African
RT   malaria mosquito.";
RL   Repbase Reports 9(2), 632-632 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 195 BP; 55 A; 48 C; 54 G; 38 T; 0 other;
     ggggcggtcc cgtggtacag tcgtcaactc gaacgactca ataacatgcc cgtcatgggt        60
     tcaagcctag aatggaccgt ccccccgtag caaggattga ctatccggct gcgtggtaat       120
     gaattaagtc tcgaaagcct gtataggccg gcatgtccgc gtaggacgtt acgccaaata       180
     gaagaagaag aaaaa                                                        195
//
ID   SINE_CP     repbase;    DNA;    INV; 284 BP.
XX
AC   X79504;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 24.02, Last updated, Version 3)
XX
DE   C.pallidivittatus Cp1 (SINE transposable element).
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; transposable element Cp1; SINE_CP.
XX
NM   SINE_CP.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-284
RA   He H., Rovira C., Recco-Pimentel S., Liao C. and Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   J. Mol. Biol 245(1), 34-42 (1995).
XX
DR   Genbank; X79504; Positions       1     284.
XX
SQ   Sequence 284 BP; 102 A; 55 C; 49 G; 78 T; 0 other;
     ctaagcgagc gaatgcttat tcaaaatgag aataagtcgt tctgttagca gagcaagctt        60
     aagcttgaca gagtctcgaa ttcatcaaaa agtagcctaa gctactacga attcagacaa       120
     aacagaacat cagacttaac ttctcatata ttccctttga aaatattatc tctctaagcg       180
     agcgaatgct tattcaaaat gagataagtc gttctgttag cagagcaagc ttaagcttta       240
     cagtagtctc gaattcatta aaaagtagcc taagctacta cgaa                        284
//
ID   SINE_CP1    repbase;    DNA;    INV; 321 BP.
XX
AC   X79507;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   29-JAN-2019 (Rel. 24.02, Last updated, Version 3)
XX
DE   C.pallidivittatus Cp1 (SINE transposable element), clone pCp125.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; CPCP1125; SINE_CP1.
XX
NM   SINE_CP1.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-321
RA   He H., Rovira C., Recco-Pimentel S., Liao C. and Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   J. Mol. Biol 245(1), 34-42 (1995).
XX
RN   [2]
RP   1-321
RA   Rovira R.C.;
RT   "SINE_CP1.";
RL   Direct Submission to Genbank (31-MAY-1994)C.R. Rovira, University
RL   of Lund, Dept of Molecular Genetics, Solvegatan 29, 223 62 Lund,
RL   SWEDEN.
XX
DR   GenBank; X79507; Positions       1     321.
XX
SQ   Sequence 321 BP; 91 A; 63 C; 67 G; 100 T; 0 other;
     aagcttgctc tgctaacaga acgacttatt ctcattttga ataagcatat tatctctcta        60
     agcgagcgaa tgctttacaa ccgttgaaaa aagagtggtt catatatatt ggcattctgc       120
     caatgccaat ggcaaagccc gatagctcag tggtctgagc acttgaccgg caatcgagag       180
     gtgcgaggtt cgattcccgc tcgggaagag tcattgggtg aattactttt ttttcaactt       240
     tttcttttaa actatttctc tctaagcgaa gaaatgctta ttcaaaatga gaataagtcg       300
     ttctgttagc agagcaagct t                                                 321
//
ID   Slatif16    repbase;    DNA;    INV; 347 BP.
XX
AC   GU229960;
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Mariner-like element internal region of mellifera subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Slatif16.
XX
OS   Scaptodrosophila latifasciaeformis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Scaptodrosophila;
OC   latifasciaeformis group.
XX
RN   [1]
RP   1-347
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   EMBL/GenBank/DDBJ; GU229960; Positions       1     347.
XX
CC   Clone Slatif16.
XX
SQ   Sequence 347 BP; 91 A; 83 C; 91 G; 82 T; 0 other;
     tttgggtgcc gcatgagttg acgcaaaaaa accttctgga ccgaatcaac gcctgcgata        60
     tgctgctgaa acggaacgaa ctcgacccat tcttgaagcg gatggtgact tggcgacgaa       120
     aaatggatca ctatttacga caaattatca agcgaaaacg gtcgtggtcg aaggcgcgcg       180
     tgaatcgtcc caatacagtg gccaagccag ggagttgacc gccaggaagg ttttgcctgt       240
     gtgtttcggt gcggattggt aagggaatct atcccactat gagctgctcc ctatatggcc       300
     tagacgcttt aattcctacc tatcttactg cgatacaaac tggaccg                     347
//
ID   Slatif1cons repbase;    DNA;    INV; 491 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Slatif1cons.
XX
OS   Scaptodrosophila latifasciaeformis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Scaptodrosophila;
OC   latifasciaeformis group.
XX
RN   [1]
RP   1-491
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   Consensus of clones with show less than eight percent divergence.
CC   Slatif1cons.
XX
SQ   Sequence 491 BP; 133 A; 130 C; 134 G; 94 T; 0 other;
     ttggggtgcc gcacgaatga cgccaaataa ccttctggac cgaatcacgc tgcgatatgc        60
     tgctgaaacg gaacgaactc cgacccattc tgaaagcgga tggtgacggc gacgaaaaat       120
     ggatcacata cgacaatatc aagcgaaaac ggtcgtggtc gaaggccggt gaatcgtccc       180
     aaacagtggc caagccggga ttgaccgcca ggaaggtttt gctgtgtgtt tggtgggatt       240
     ggaagggaat catccactat gagctgctcc catatggcca gacgcttaat tctaccatct       300
     actgcgaaca actggaccgc ttgaagcagg cgatcgacca gaagcgtcca gaattggcca       360
     acaggaaggg tgtaagtgtt ccaccaggac aacgccagac cacacacttc gttgatgact       420
     cgtcagaagc tacgggagct cggatgggag gttttatcgc atccaccata ctccccagac       480
     ctcgccccaa g                                                            491
//
ID   Slatif2cons repbase;    DNA;    INV; 502 BP.
XX
AC   .
XX
DT   19-APR-2011 (Rel. 16.04, Created)
DT   19-APR-2011 (Rel. 16.04, Last updated, Version 1)
XX
DE   Consensus of mariner-like element internal region of mellifera
DE   subfamily.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Slatif1cons;
KW   Slatif2cons.
XX
OS   Scaptodrosophila latifasciaeformis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Scaptodrosophila;
OC   latifasciaeformis group.
XX
RN   [1]
RP   1-502
RA   Wallau G.L., Hua-Van A., Capy P. and Loreto E.L.;
RT   "The evolutionary history of mariner-like elements in Neotropical
RT   drosophilids.";
RL   Genetica 139(3), 327-338 (2011).
XX
DR   [1] (Consensus)
XX
CC   onsensus of clones with show less than eight percent divergence.
CC   Slatif2cons.
XX
SQ   Sequence 502 BP; 172 A; 100 C; 103 G; 127 T; 0 other;
     tgggtgccgc atgaattgaa agaaattcat ttaacaaatc gtttaaacgt ttgtgatatg        60
     catcttaaac gcaatgaaaa ttgtccattt ttgaagcaaa tcataactgg agatgaaaaa       120
     tggattgttt acaaaacgtc aatcgaaaac gatcatggtg caaccatgat gaagcgccac       180
     aaaccacttc caaaggctga tattcaccaa aagaagatta tgctgtcagt attggtggga       240
     ttggaagagt gtggtatatt attgagctgc ttaaaaaagg aaccaaaacg attaattcgg       300
     atgtcttact gtaagcaact ggacaaattg aatacagcca ttaaggagaa gcgaccagaa       360
     tctggttaat cgtaaaagct gtccatattc caccaggaca acgctagact cgcactacat       420
     ctttggtcac ccgccaaaat actgagtgaa cttggccggg aacttcttga tgcatccacc       480
     atactgtcca gacctaggcc ca                                                502
//
ID   SNAPBACK_TC repbase;    DNA;    INV; 1231 BP.
XX
AC   U31526;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Tribolium castaneum mid-repetitive element SNAPBACK.
XX
KW   SNAPBACK_TC; midrepetitive element.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RA   Stuart J.J., De Gortari J.M., Hall S.P., Maxwell E.M., Mocelin G.,
RA   Brown J.S. and Muir M.W.;
RT   "Useful DNA polymorphisms are identified by snapback, a
RT   mid-repetitive element in Tribolium castaneum.";
RL   Genome 39(3), 568-578 (1996).
XX
DR   Genbank; U31526; Positions       1    1231.
XX
SQ   Sequence 1231 BP; 380 A; 233 C; 249 G; 369 T; 0 other;
     aagtgataaa taaattgcta ttacaaatga aaaatttgct actttcattt tacccgtcat        60
     ccgaaatggt tgtgtttgtg gattttcaag ggttcaatta cggtaattgt accgaaactt       120
     taaccataaa agaattagct gtatttaata cgaacaaaag cgcaccagac atctttttgt       180
     ttaaaccacc cgatgatctt tcaaccttac cgcatcgtta tcagaagcaa gccgattggt       240
     tgacgaataa ctttcacggg ctttcttgga ctgcgataat tacgactacg aaaagttgtc       300
     tgaaatattg aatgaaacta cgaaaaattc aaagtgtata tacgtgaaag gaatagataa       360
     gaagcgtctt acttttgaaa cgtttaccaa aaagtcaaat tgtaaacatt gaagatttag       420
     agtgtccatc gcttcgttac ttgagagaac attttgatac gaattgttgt gtgaatcata       480
     taatcagcga ttcggtgtgc gctgttcaaa acgtacaaaa cttggctagt tggtacaatg       540
     aatactttac aactcaaaac gtgtctggag atgatctctc ggaagaaaag acaccacgtt       600
     cttgtttctg cgtataacac tctacctgtc ctaatcacca gaccctctat ggttattatc       660
     aacagagacc ctgattactc ccgggtagtc attggatggc tgtttacatt gataaatttg       720
     gtttcgcata cttctttgat agttttggaa atcagccgcc tccgaatatt ttaaaatttc       780
     ttagaaaaaa tgctatgatg tggtcttaca atatttctca aattcaaaat ttttcttcaa       840
     ccgtctgtgg caaatactgt actttatttc ttttaaacta cgcattaggc aattctgttg       900
     atgattttct aaagttattt aacaaagatt ttcacaataa tgacaaacta tgcaacaaaa       960
     tgtttaacaa atatttcatg aataaataaa gactttgcaa gatccatgtt ttttctttct      1020
     ttccttaatt ctcgttactc accagcattg acgcggacgg ggccggcgcg gacgacgggg      1080
     cggcggcgcg gaaacgggcg cgggacgggg tggcggcggc gcgggaacgg gcgcgggacg      1140
     gggtggcggc ggcgcgggga cgggcgcgac acacacacac acacattctg ggttaaatca      1200
     aaataaaatc acagaaatca tatttattag a                                     1231
//
ID   Sola1-10_AP repbase;    DNA;    INV; 3836 BP.
XX
AC   ABLF01041013.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 4)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-10_AP.
XX
NM   Sola1-10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3836
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(959..1027,1006..2292,2241..3158)
FT                 /product="Sola1-10_AP_1p"
FT                 /translation="MKLVIVIVIVIFYCFRKMRDTKMEDERYKNVGAWLES
FT                 QQPSISTTLNTVPYISNPETVSYNIINQLSDDSVTVETEKSDECVDNGSDE
FT                 DPTFMINTIDRSSESLSCIVQVPVNSTVITENDTDFIIHEVVDYLIKEVCK
FT                 KNKSRKRSCDPSSWESNIRKKRLASGMSYLSKKGDKIIQCKQLKPPCVNCK
FT                 KKCSEKIDEHDRKKIFCTFWDGDKDINLKRQYITTCIEEKCVDRKRERNGN
FT                 RAGVRQKSLVYSFEIENVNTGIKNKIDVCKTFYLNTLNISDMFVRTALKKK
FT                 THGGMVSLDRRGYHAPPNKISDDIRDGVKKHIKSFPAIESHYSREKTVKKY
FT                 LGNELNISKMYKLYVDNCKEHKVPTGNIANYWLYSEIFNNEFNLAFKEPAN
FT                 DSCDICDEFIIKIKNSTIEEEACLQKNYESHLDEAKLRYAEKKKTNLKQRK
FT                 LAVTKKPKKKDKLEAKETSCNKKTIMVDLQKCLPTPYLTNGQSFYLRKLWT
FT                 LNLTIHDDTLNKATCVLWDETKGGRGGNEIASCVLKWALQLKETESNIEEL
FT                 NIWSDNCAGQNRNFMIVTLYMWLLKKMPNLKIINHKFLLRGHTHMEVDSDH
FT                 SIIERAKKKIEHSSIMTPWDWQKFIRSCKNKNPFEVINMELEDFLDFQCLY
FT                 NSKNSPLIYRRKEVKISEIVHLRLEKEKEGLLMFKTDFAEKEFKTVSLNRT
FT                 TRSSVWPEHLPQVTSEPKPISKLKYKDLQTALKWVPRIFHDFYTNMKYDDK
FT                 IADYPE*"
XX
SQ   Sequence 3836 BP; 1530 A; 434 C; 588 G; 1284 T; 0 other;
     ctgtaccgca gaagtcaact aacgcaagtc cattttttga cattttgagt tagtcatata        60
     atcagaatgt gcgttttatg atatttttaa aggtattaaa acgtaagtcc tatgtacaat       120
     aaatgcaaag ttacctagaa gtatactaac ttaagtccta aactatgata gaagtattga       180
     aatgtaagtc cagcatgata gtttacttct gggtcaaaat agtaggacga aataatagtg       240
     ttggagtata caaacgtaag tccctttacg atactttacc tctagcactg ataagaatgg       300
     cacactgcta acatcacatg tttttcttat cgtaagtcca tttatcaatc agtaatcaac       360
     ccgccaaatg taatattttt atcatattta tattttttaa tataaattat taattataaa       420
     cgtcattatt gtttattttg ttagatgatt aagcataaat ttgttataaa ttatatttta       480
     ttagctattt tatagtataa tattgtatat tttacgtgta agaatgcaat caagtcgtgc       540
     aaaacgcatt tttaaactag ctacaaatga aaaaggtgtt catgatgtaa gtataaatat       600
     taatttcatg aatagtgctt attatcaaaa aaggctctta ttaattattt ttataatatt       660
     atatgaatta ttgtaatatt aattataggt atttaaagac acacatatta tgtatgactg       720
     ctcaatacca actactgtta gcatggtaca tacaacaaat aatatcaata atggtaatga       780
     tgttcttact ctcagtaatt taccagtata cagtataaca gtaagaaacc atgtttagta       840
     ataaagaatc tttgtctttc atctacctaa aacaataaaa aaattaatat tactaatact       900
     aatttcatat cataataata tttattatat cagaataaat aataaatatt gttatgatat       960
     gaaattagta atagtaatag taatagtaat tttttattgt tttaggaaga tgagagatac      1020
     aaaaatgtag gtgcctggtt agaatcacaa caacccagta tatctacaac tttgaatacg      1080
     gtgccataca tttctaatcc ggaaactgta agttataata ttattaatca gctaagcgat      1140
     gattcagtta cagttgaaac tgaaaaaagt gatgaatgtg ttgacaatgg ttctgatgaa      1200
     gatccaacat ttatgatcaa tactattgat agatcaagtg aaagtctcag ttgtatagtt      1260
     caggtaccag ttaattctac tgttattact gaaaatgata cagactttat tatacatgaa      1320
     gtagtggatt atctaatcaa agaagtttgt aagaaaaata aaagccgtaa gaggtcatgt      1380
     gatccttcat cttgggagag taatataaga aaaaagagat tggcttcagg aatgtcatat      1440
     ttgtcaaaga aaggtgataa aattattcaa tgcaaacaat taaagcctcc ttgtgtaaac      1500
     tgtaaaaaaa agtgcagtga aaaaatagat gaacatgata gaaaaaaaat attttgtaca      1560
     ttttgggatg gagataagga tataaatttg aagagacaat acattaccac ttgcattgaa      1620
     gaaaaatgtg tggatagaaa acgagaacgt aatggaaatc gtgctggtgt aagacaaaag      1680
     agtttagttt attcatttga aattgaaaat gtgaacacag gaataaaaaa taaaattgat      1740
     gtgtgcaaaa cgttttacct taacacattg aatatatcag acatgtttgt tagaactgct      1800
     ttgaagaaga aaacacatgg tggtatggtt tctcttgata gaaggggtta tcatgcccct      1860
     ccaaataaaa taagtgatga cataagagat ggtgtaaaaa aacatattaa gtcatttccg      1920
     gcaattgaaa gccattatag cagagagaaa actgttaaga aatatttagg aaatgaacta      1980
     aatatatcaa aaatgtataa actttatgtt gataactgta aagaacataa agtaccaacg      2040
     ggtaatatag ctaattattg gttgtactct gagatattta ataatgagtt taacttagcg      2100
     tttaaagagc ctgctaatga ttcttgtgac atttgtgatg aatttataat aaaaataaaa      2160
     aattcaacca ttgaagaaga agcttgtcta caaaaaaatt atgaatccca tctagatgaa      2220
     gcaaaactaa gatatgctga aaaaaaaaag acaaacttga agcaaaggaa actagctgta      2280
     acaaaaaaac cataatggtt gatttacaaa aatgccttcc aactccatat ttaaccaatg      2340
     gacagagctt ttatttgagg aagttatgga cacttaacct aacaatacac gatgatactc      2400
     ttaacaaagc aacgtgtgtt ctttgggatg aaaccaaagg tggtcgaggt ggtaatgaaa      2460
     ttgcatcgtg tgtgttgaag tgggccctac aattaaaaga aacagaatct aatattgaag      2520
     aattaaatat atggtctgat aattgtgctg gacagaatag aaattttatg atagttactt      2580
     tgtatatgtg gctgttgaaa aaaatgccaa atttaaaaat aataaaccac aaatttcttt      2640
     tgagaggtca cacccacatg gaagtagaca gtgatcattc tattattgaa agagcaaaaa      2700
     aaaaaattga acattcaagt ataatgacac catgggattg gcaaaaattt attaggtctt      2760
     gcaaaaacaa aaaccctttt gaggtaataa atatggaact ggaagacttt ttggattttc      2820
     aatgtctata caattctaaa aattctccat taatatacag aagaaaagaa gtaaagattt      2880
     ctgaaattgt tcatttgcgt ttagagaaag aaaaggaagg actattaatg tttaaaacag      2940
     acttcgctga aaaagaattt aaaactgtgt cattaaacag aacaactaga agttcagttt      3000
     ggccagaaca tttaccacaa gtaacaagtg agcctaagcc tataagtaaa ttaaaataca      3060
     aagatttaca aacagctctt aaatgggtgc caagaatatt tcatgacttt tatacaaaca      3120
     tgaaatatga tgataaaatt gctgattatc cagaataaaa ctagtcagtt attataataa      3180
     taagaactaa atagtcacta atcattacta tgttatttta taaaaaaaag tttcctattt      3240
     atgttaaagt attataatat aaattttaat tttgttttag ttgtgttctt atgttattta      3300
     attatattat gtattattat tatattgtta tgaaataatt atattttaat cagagcaaaa      3360
     gtgattttag tttatatagt taacaattga atttaaaaaa aaaaaagtat tataaaatgt      3420
     tttaaaatat ttcaataaaa gttaaatgtt attttataaa aaaaagtttc ctatttatgt      3480
     tgaagtatta taatataaat tttaattttg atttagttgt gttcttatgt tatttaatta      3540
     tattatattg ttatgaaata attatatttt aatcagagga aaagtgattt tagtttataa      3600
     tgttaacaat tgaatttaaa aaaagtatta taaaatgtta tatataatgt tataaatata      3660
     tttcaataaa agtaaatata ttgtattagt atttataaaa aaattttgat gaaatatgtt      3720
     caaaaataaa gacacagaaa aacaatttta ccaaaaatcc atgttaaaaa ctttgttttg      3780
     catctcctga aaaatctact ttttgtgact tgcgttagtt gacttctgcg gtacag          3836
//
ID   Sola1-11_AP repbase;    DNA;    INV; 4188 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-11_AP.
XX
NM   Sola1-11_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4188
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1153..2673,2762..3148)
FT                 /product="Sola1-11_AP_1p"
FT                 /translation="MYHPLDRPILTISDLESMDFRYLDSFGDTVEIQNDGV
FT                 SNEGNNLFHTALMVPVSGTGINTHEIDQTELDYNSIINNSNLQMNNMTVNE
FT                 ASIISESHDAPYEPDEIELNESFSDDNVVGRSGRKKPKKGTTRKVLKNYLI
FT                 NGTGKSVKPNPCAKLYQNKCSKKFDESQREDIFKFFWELDHERRRDYLLSC
FT                 MKRVQIKRKRSIGESRRSVTNEYFLKHNSIEVQVCQQFLLKTLDVPQKLLR
FT                 YTHLNKSPVNTAKKDRRGYNTPINKTSPEQLQIVDKFIRCLPAVSSHYCRN
FT                 KSNKKYLPTEFRNIANLYLIYKDYCTKKNEFPISSLVFRRFFKTKYSIGFH
FT                 LPKKDKCKICEKKNENVNNNEEEIQKYNCHINLKEKAKAMFLSDQKKTESN
FT                 KSFLCISFDLEKVLNTPYGNNMNFYYSRKYSQYNLTVYESVTKRVVCYLWG
FT                 EGDANRGCYEIATCMHDYLMDIDKKKSIKTIALYCDSCCGQNKNHVIIGML
FT                 NKFINKASGLLFSYGKTLMTDNKKVVKITKMKSVQFTKGEGIQVFFDYDEQ
FT                 FENIMIQHSPRIRKSKKANTEVLLEPQQLYSCPRKITSQKYFDLIKLCKQE
FT                 IIPTRFHDEYKNSSHDKNILDMLTETDEEDDVLEEKD*"
XX
SQ   Sequence 4188 BP; 1601 A; 514 C; 607 G; 1466 T; 0 other;
     cgagccttat taggtaaaag ggcgtaagcg acaattttgg cgaaaatgag atattggtat        60
     caaaattttt ctaaaattca gacgcatcga tctgtaaaat ggctaagcga caatataaac       120
     ttaagcatgt cattttgcca tttaaagatt ggacgaaagc gacatgtcgt ttaggcaata       180
     acttaaaaat tgatcgtaag tcacattaat ttcaaaaaaa atacgtaagc gactttgttg       240
     catgaggtaa gcgacaaaat aataataatt atttaatcag gcgtatgcga caatttaatt       300
     ggcgattaga aattcgttcg taacatcatg ttggttacga ttgttttcat aatattatat       360
     tgtttatcta ttatcttcaa tattattatt aataattact tatagaattt atttaaaacg       420
     gtgaaaaatc atttgatgag cttatattgt gttacaacat tatttaattt actttttacc       480
     ctgcttttta cctacttctt atatttttac aactgtaatt cgtataataa aaatggaaca       540
     tcaggaacat cacgttctcg agtacgaaaa atgttgtttg ctgcgaacaa tttgaataca       600
     ataccattaa gtaagatttt gaaataatct ttaatttaat ttttgatttc tagtcatatt       660
     attatgatta aactatttgt caaatacttt tagctgatga tagcatttgt attactcatg       720
     ataattcaaa tgtacagaat ttgagtacac aagacaatga tgaatgtaat caaaatttgg       780
     atcactcagg atactttggt atgttcaaca tgttaacaca aagttaacta actattggca       840
     ttgatttgtt ttattataat atattattat gattttattg ttcttaataa tatatctata       900
     aagtaaataa cattatatta ttatagttag tacctatttt aaatgtttca tttactattt       960
     attttatact gcacttaatg ctaaaatgtt cattaccaaa tccaattatg ttagtctact      1020
     tttatattgt tagttataca ctcattattt tttaatgttt cctataatat catgttttgc      1080
     ttttattaat tagatgaaaa tgtacatatt attgctgaag agaatgatgc tgtcaatgat      1140
     attaataata atatgtatca tcctctggat agaccaatac ttacgataag tgatcttgaa      1200
     agcatggatt ttcgctactt agactcattt ggtgatactg ttgaaattca gaatgatggt      1260
     gtttccaatg aaggtaataa tttatttcac actgcattga tggtgccagt atcaggtact      1320
     ggcattaata ctcatgaaat tgatcagact gagttagact ataatagtat aattaacaac      1380
     tcaaatcttc aaatgaataa tatgactgtg aatgaagctt ctataatatc tgaatctcat      1440
     gatgccccgt atgaaccaga tgaaatagaa ttgaatgaaa gttttagtga tgacaatgta      1500
     gttggaagaa gtggccgtaa aaaacctaaa aaaggtacta ctagaaaagt tttaaaaaac      1560
     tacttaataa atggaacagg aaaaagtgta aaacccaacc catgtgcaaa actgtatcaa      1620
     aataaatgtt caaaaaagtt tgatgaatca caaagagagg atatttttaa atttttttgg      1680
     gaattagatc atgaacgtag aagagattat ttactgtcat gtatgaaacg agtacaaata      1740
     aaaagaaaaa ggtcaattgg tgaaagtaga agatcagtga caaatgaata ttttttaaaa      1800
     cataattcta ttgaagttca agtatgccag cagtttcttc ttaagacatt agatgtccct      1860
     caaaaacttt taagatatac ccatttgaat aagtcacctg tgaacactgc taaaaaagat      1920
     agacgtggtt ataatactcc tataaataaa acaagtcctg aacagttaca aatagtggat      1980
     aaatttatca ggtgtttacc agctgtttca tcacactatt gtcgcaataa gtcaaacaaa      2040
     aaatacctac cgactgagtt tagaaatatt gcaaatttat acttaattta taaagattat      2100
     tgtacaaaaa aaaatgaatt tcctatttca tctttagttt ttcgacgttt ttttaaaact      2160
     aaatactcta ttggcttcca tttaccaaag aaagacaaat gtaagatttg tgaaaaaaaa      2220
     aatgaaaatg taaataacaa cgaagaagag attcaaaaat ataattgtca tatcaattta      2280
     aaagaaaaag ctaaagctat gtttttgagt gatcagaaga aaactgagtc aaacaagagc      2340
     tttttgtgca tcagttttga tttggaaaaa gttttaaata cgccttatgg caataatatg      2400
     aatttttatt acagccgtaa gtactctcaa tataatttaa cagtgtatga atctgttaca      2460
     aaaagagtag tatgttatct ttggggagaa ggagatgcta acagaggttg ctatgaaata      2520
     gccacttgta tgcatgatta cttaatggat atagacaaaa aaaaatccat taaaactatt      2580
     gcactctatt gtgattcctg ctgcggtcaa aataagaacc atgtcattat tggaatgctg      2640
     aacaaattca ttaataaagc aagtggccta ctctgatagg taattcaaga aaaaatcctg      2700
     gtccacttga agtaaaagtg atgaagttca atgatttctt tgactggaag acatttacta      2760
     gttcagttat ggaaagacct taatgactga taataaaaaa gttgttaaaa tcacaaaaat      2820
     gaaaagtgtt cagttcacta aaggagaagg aatacaggtt ttttttgatt atgatgaaca      2880
     atttgaaaat attatgattc aacattctcc tagaataaga aaatcaaaaa aggcaaatac      2940
     tgaagtttta ctggaaccac aacaactcta ttcatgccca agaaaaataa catcacaaaa      3000
     gtattttgat ttaataaaac tttgtaaaca agaaattata ccaacaaggt tccatgatga      3060
     gtacaaaaat tcaagccatg acaaaaatat tttggatatg ttaacagaaa ctgacgagga      3120
     agatgatgtc ttagaagaaa aagattgact ttgaaataag aaaatattaa aaaatatgat      3180
     agatttatgt tacagtttta cagttttatt gcaattaatt tattaaaact aagtattaag      3240
     tattatattt tatattttaa tcctctaatc taataagtac tttttatttt atgtctgtaa      3300
     aatgttcatt ttatgtctgt ttactcattt gaattgtgat attgttattt tttgttttat      3360
     taatataact ataatattta taagttaaat gtgttaataa gatacctaca gatgatttat      3420
     ataattcact acacatttta acataatata accaaaagac tggtatatat attattataa      3480
     ctaagtatta attagattta atttcctatt aataatatta tgaactaaaa agactttaat      3540
     tgtgataata ttgttatttt agtattttaa ttttacttac tttaaaaata aaaccaaaaa      3600
     gacttggaag cctgttatat ttcttacatt atacctaatt atgtttaaat tctatgtcag      3660
     attttatatt acaggtaaat attagagtaa agtttaatag aaaacgtatt ttttgaattt      3720
     ctcagtaatt tttgagaaaa tagtgaagac cataatatta atatgaatac ataccaagct      3780
     atgcttatgc atgtctgtct tagttgaggg taattaatac caaaaagtaa cagataataa      3840
     aatgtataca caaataatat ggttaataga caaacaacca tcatagccat catattaata      3900
     tttacgaagg gagggggggg ggaaatatga tagataaaga atatgaaaaa taaaaatttt      3960
     agcaccattg agctatattc gaacatttat tttattgtaa gcgacataag ttacacaata      4020
     ttaaaaatat tatttttatc ccgtaattgt attttcgaaa taattttttt ataactacac      4080
     ttataatttt catgaaaatc catcagatat tcgattttta aagtgttttt tttagttcct      4140
     gtaaaataat gaaaatgtcg cttacgccct tttacctaat agggctcg                   4188
//
ID   Sola1-1_AA  repbase;    DNA;    INV; 3285 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola1 DNA transposons from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-1_AA.
XX
NM   Sola1-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3285
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(652..681,695..2656)
FT                 /product="Sola1-1_AA_1p"
FT                 /translation="MSPIPGKVILSISLQFIFNLGNLLNDTISLHSESDPE
FT                 WSYAAVSDEEEDESPSKKRKKNKQSWKNVQRKKAKEKGQAYTSTTGQHKRA
FT                 RSVGDPCSCKRLKCTENFSTEARDLILAEFLTLKSSGQNQFLINNIDSQEK
FT                 VRYTTAGPSRRQYSVKYFLPTTSGRLQVCRGMFLKTLDVSERKIRSLLGKQ
FT                 RTSAAAICSEDGRSGNRSRLETSDDSKEIVRRHIRQFPAYTSHYTREKSKK
FT                 KYLSSDLTIRKMFDLYKVWCVGENVVPVQENVYRKIFTEDFNLSFRKPRTD
FT                 TCNRCDQFNVLIKNAENDDDKHDLERQRDEHQAWATKMYKKKDKDKSVAKL
FT                 FPNVRTMSFDLQKCLPTPYLTSGESYYKRQLYTLNLTTYMTISSEQTKATC
FT                 YLWHEGIAKRGSQEIGSCLYKELKLLPPEVDTLFCYSDCCRGQNVNFFICC
FT                 MFSYFIEECILAGRELSIIHRLLVPGHTHMEADTIHGAIEKAKKTTSIDIQ
FT                 IPKDWAQLIANIRRTNPIAVVEMDQGDFLAFKSLDGTYYKRPKKNVDQIPV
FT                 RFSDIVCFKYTTSSPGAVFYKYRTSSVFEKAVIKEQTAEPIPTLQPISTEP
FT                 LMLPVEKLRDLQDLQKFINPVNRAFYDTFLSNLQPKKKGRKPKVTKVVDHF
FT                 EADLSDFEESSNEN*"
XX
SQ   Sequence 3285 BP; 1075 A; 636 C; 678 G; 896 T; 0 other;
     ctcgcgttta gtatcataag ggcgtatctg cagttttggc gggaaatgag atttcaccac        60
     atttgaattc tataggtttg aaactataac cctaccaaaa attattactt aaaacttatt       120
     agaaatatca tattttcaaa aaaaatgatt ggcgtaacta cagagtcacc atgaaaaaaa       180
     agatacgaca gacgtaactt ttttggtcat cttctctgaa agttacgcca actgtgattc       240
     tgctcgtgtt tacaaaatgt ccgccggaaa atatttgcag ctcgctattt tttcaacagt       300
     ttaaacacga tatggcgcag ttaaacgagt tcgacacatt cgaggatgta atttggctta       360
     cacctgagga aatgctgatg gaattcactg cagtagtagg tgagtaatgc tgaaaaacaa       420
     ttcccaacat tgtcctgtaa atttgtgttt accatcatag aacacagcgc agcggattcc       480
     ctcacaaacg cctcacatga ttcagaaaca gaaaaagacg gtgatgaacc agtggactca       540
     gctacggttg gcacggaacc agaagacgag caggaagctt tacgagaacc tgtcatagag       600
     cccttggaaa taccagaaat tgttaatctt ccctcagtcc gcaatccgga aatgtctccc       660
     attccaggta aagtaattct atgacagttg ttgatcaata tcattacagt ttatcttcaa       720
     tttaggaaat ctcctgaacg atacaatttc attacattcg gaaagtgatc cggagtggtc       780
     atatgcagct gtgtcagatg aggaggaaga tgaatcacca agtaagaaaa ggaagaagaa       840
     taagcaaagt tggaaaaatg tccagcgaaa gaaggccaag gaaaaagggc aggcttacac       900
     gagtaccact ggacaacaca agcgcgcccg ctcggttgga gatccttgtt cttgcaaaag       960
     actcaagtgt acagaaaact tttcgacgga agcacgtgat ctcatcttag ccgaatttct      1020
     aacgcttaaa tcatccggac aaaaccaatt tctgatcaac aacatcgaca gccaagaaaa      1080
     agtgcggtat acaacagcag gaccatcgcg tcgtcagtat tcggtgaaat attttctacc      1140
     aactacttct ggaaggttgc aagtatgcag aggtatgttt ctgaaaacac ttgacgtttc      1200
     ggagagaaaa atacggagcc ttttgggaaa gcaacgtacc agtgccgcag caatatgctc      1260
     agaggatggt agatctggta accgatcgag attggaaacc tcagatgatt caaaagaaat      1320
     agttcgaagg catatccgac aatttcctgc gtacaccagt cactatacga gagagaaaag      1380
     caagaaaaaa tatctttcga gtgatttaac catccgaaaa atgtttgatt tgtataaggt      1440
     atggtgtgtc ggagaaaatg tggttccggt tcaagagaat gtgtatcgca agatttttac      1500
     ggaggatttc aacttgagtt ttcggaaacc acgaacggac acctgtaacc ggtgcgacca      1560
     gttcaatgtg ttgattaaaa atgccgaaaa cgacgacgat aaacatgatc ttgaacggca      1620
     aagggatgag catcaagcat gggccaccaa gatgtacaaa aagaaggata aggacaaatc      1680
     tgtagcaaaa ctgtttccca acgtaagaac gatgtcgttc gacttgcaga aatgtctacc      1740
     tacgccgtat ttgactagtg gcgagtcgta ttataagcgt cagttatata cgcttaatct      1800
     aacgacgtac atgacgatct ccagtgagca aactaaggct acttgctatc tgtggcatga      1860
     gggaatagcc aaacgaggat cacaggagat tgggtcatgt ttatacaaag agcttaaact      1920
     cttaccacct gaagtggaca cattattctg ctacagcgac tgttgcagag gacaaaatgt      1980
     gaatttcttc atctgctgta tgttttcgta cttcattgaa gaatgcattc ttgctggcag      2040
     agaattgtct atcatccatc gtttgctagt accaggtcat acacacatgg aggcagatac      2100
     catccacggc gctattgaga aggcaaaaaa gactaccagc attgatatac agattcctaa      2160
     ggactgggct cagctgattg ccaatataag gaggactaat cctattgccg ttgtcgaaat      2220
     ggatcaggga gattttttgg cgttcaaaag tttggatgga acctattaca agcgtcccaa      2280
     gaaaaacgtt gatcagattc cggtgcggtt tagcgacatt gtatgcttca agtacaccac      2340
     tagtagtcct ggagctgtat tttacaaata caggacgagc agcgtcttcg aaaaggcagt      2400
     tatcaaggaa cagacagccg agccaattcc taccctgcaa ccaatttcaa cagagccgtt      2460
     gatgctaccc gtggaaaaat tacgcgacct tcaagacttg caaaaattca tcaaccccgt      2520
     caacagagcg ttctatgaca cattcttgag taacttgcaa ccgaagaaaa agggaagaaa      2580
     accaaaagta acaaaagttg tcgaccattt cgaagctgat ctatctgatt ttgaagaatc      2640
     ctcgaatgaa aattgaggcg attttgatgt tcagttttgt gcgttgagtt tttcatgaaa      2700
     taaatcaaac gtaattaata ttgacctatt tttttattac tttcttgtaa aaaacatact      2760
     cataaagatg cataatccaa tcgagggggc tcatattata gtctgggcaa tcaaattgat      2820
     gatatttccc tgtatcttcg ctgcgatgta tgaaaaccaa tatggcatta tccaagaaag      2880
     tttttatttt aattgtaaaa ctgtacaagg agcacttagt tgagaaactg gctcgattcc      2940
     agtaggtatg aaatttcaac aaaaagttat tagagactct catagtcgtt tagatgttat      3000
     aaaaatggtt aattcatcaa acactaatga ttttgcgttt tgacgtatct ttttccaatg      3060
     cgacataccg gcgtaactac aatttatttc attatcaagc atattttaca tgtacttcat      3120
     atgccaccgg atactccaat ctcataatag tatttgtata aatttacaga caaatctact      3180
     ttaaaacaaa aaaatacgtg atttgtttgt tcgttgataa tttcaatgtc gattttctcg      3240
     gtttctttga atctgcagtt acgcccttat gatactgaac gcgag                      3285
//
ID   Sola1-1_AP  repbase;    DNA;    INV; 4723 BP.
XX
AC   AC202225.3;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-1_AP.
XX
NM   Sola1-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4723
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1537..3282
FT                 /product="Sola1-1_AP_1p"
FT                 /translation="MTPKEKVQRKRQRKVSDWKDVRAKAELNKGIEHINRS
FT                 GKKKNAVEMGPPCKCKLRCFDKVSEDLRKKIFIEYWSLGDHSRQWDFIARY
FT                 VTTVEKKVTTLSTESRRSYSRKYSLPINNDKIKVCKVMFLKTLSISERVVS
FT                 TVSQKLMISPVIPLDQRGTHHTRPNRIQREVLDTIREHISMFPSVDSHYRR
FT                 ADSQKQYLESDLSISKMHRLYLEWVKDKTVCVKAKSATLRQYTDVFNTFNL
FT                 SFYKPKKDLCDKCEQFKLANEEEKLILQSEHENHLKNKDIARDKKNYDKLR
FT                 AMNNHELCVAVFDLEKVLTTPQGEAGSFYYKRKFAVYNFTVYDIGNKQGYC
FT                 YMWDESEGKRGSNEIGTCLLKFIESMKEKGYKEFSFYSDNCGGQNRNRFIY
FT                 SMWEYASFTFKVKITHTFLERGHTQSEGDSMHSCVEHAKKGKSIYVPAQWV
FT                 TLVRCSKVKGNPFRVIEVSYDEFLDFKPLVEDKQFNFKTSTNGDIIKWNSV
FT                 KEVFVSFESPFDLCLKYDLNSTDFIHVNILKSKQRGRYQPHTKPSKAYKDK
FT                 LPIEKSKHNDLLSLCSMGLIPSTYHSFYKDLLSK*"
XX
SQ   Sequence 4723 BP; 1713 A; 611 C; 682 G; 1717 T; 0 other;
     cgcctaccgc aacgaaaaag gtcgtatctc gatttttgtc atttttgagt tacgaccata        60
     ttcgtatagg aaataatttt ctctatcgcc cacgaaaacg gtcgtatctg tagctatcca       120
     aggaggttag atattactta aattaaattt aattgatttt tgtatttccc gcgaaaacaa       180
     acgtatgttt atatacgacg ctttgattac aaatatttcc cgcgaaaaca gacgtatgtt       240
     cagataagac gctttgataa caagacgtat agtgttagta atcaaaatat aattttattc       300
     aattatcaat ttaatatttt aataatatta taatgtaaaa taatatagtt aattaattgt       360
     ttaactcctt tcggctttct attgtacaat attatattat tataattgaa gtagttatcg       420
     caatattatc gtcattataa ttattctatt ttctatttcg aaagatgaca cacgaataca       480
     aattgtctac agaaatgaaa ggtgtaagta caaattttaa ttctataata tcagtgtaaa       540
     ctgtataatt taacaaaatt aaaacaatgc aatttgtgat tcgaaaatag actacaatat       600
     tataatatta ttattattat tattgtatta tttactatgt atttttttga acaggaaaat       660
     aataataata ttggtttaat tgattccgac tgcgacagtg tattagatac atattattat       720
     ggatgtctaa gtagtgatga tgatgttatt caaccaattc ctgttaataa tgatgtatca       780
     gcagcaatta tcaatcatca ggcaatatat tttaatcact taatgctaaa ttaatatttt       840
     attaaaataa agtataggta ataggagtac ctacttttgt ttaaaattta atatacattt       900
     tttaattaca ggatttgtgg tgtattgatg atagtaatag tgaacactat gatagtgata       960
     atgacccaga gtacacacca cagttggaca atttcaattt agttgatgaa gctcttgtta      1020
     atgatgacgt gcctgtcgct gataataatt atgatgctct aaatgatgta aatagtctta      1080
     ttagtattta tggttgctat ctagggttgt atctagggtt caatttttat agctaaggat      1140
     tgaaaattta aaacaaggtt ccataaatac taaataggtt ataataatat ataaattact      1200
     ttaggtattc acaataatat caaatatact tattaatttt atttataact tgtaactagt      1260
     aaataataaa taaaatatta aaaacttgta ttttttttaa atttttggtt aaaaaaaatc      1320
     ccctaaatga aaattatact caatttttat tagaatatta ctcacttcat tgcaaaatat      1380
     aatactcact attctcactt tttttaagga aaaaatgagt agcaaccaat aattataata      1440
     taatattatg aaattgtaca cacacatttt attttatgct aggaccttgc aaatgttgga      1500
     aataataatg atattacaac aaaaaaaaag cgtgttatga cacctaaaga aaaagttcag      1560
     agaaaacgtc aaagaaaggt atcagattgg aaggatgtta gagcaaaggc tgaattaaat      1620
     aaaggtattg aacatatcaa tcgatctggt aaaaaaaaga acgcagtaga aatgggtcca      1680
     ccatgtaaat gtaaattaag atgttttgat aaagttagtg aagatttacg taagaaaata      1740
     ttcattgaat actggagcct aggggatcat agtcgtcagt gggactttat agccaggtat      1800
     gtaacaacag ttgaaaaaaa agtaacaaca ttatcaactg agtcacgcag atcatattct      1860
     agaaagtatt ctttacctat taataatgac aagattaaag tttgcaaggt aatgttttta      1920
     aaaacacttt ctatatctga aagagtagta agtacagttt ctcaaaaact aatgatttct      1980
     cctgtaatac cacttgacca gagaggtaca catcatactc gacctaatcg aattcagaga      2040
     gaagtacttg atacaatcag agaacatatt tctatgtttc cttcagttga ctctcattat      2100
     aggagagcag attcccaaaa acaatatttg gaatcagatt tatctatttc aaaaatgcat      2160
     aggctttatc ttgaatgggt gaaagataaa acggtttgtg ttaaagctaa aagtgctaca      2220
     ctaagacaat acacagatgt tttcaatact tttaacctca gtttttacaa acctaaaaaa      2280
     gatctgtgtg acaagtgtga gcagtttaaa ctagcgaatg aagaagaaaa gttaatacta      2340
     caatctgagc atgaaaatca tttaaaaaac aaagacatag ccagagacaa aaaaaattat      2400
     gataaactac gagcgatgaa taatcatgaa ttgtgtgtgg ctgtttttga cctagaaaaa      2460
     gtgttaacaa ctccacaagg tgaggctggt agtttttact ataaacgaaa atttgctgtt      2520
     tacaatttca ccgtttatga cattggcaat aaacaaggat attgttacat gtgggacgag      2580
     tccgaaggca aaagaggttc caatgagatt ggaacttgtt tgttaaaatt tattgaatca      2640
     atgaaggaga aggggtataa agaattttct ttttattcgg acaactgcgg tggtcaaaat      2700
     cgcaaccgat tcatttactc aatgtgggaa tacgcttcct tcacttttaa agttaaaata      2760
     acgcatacat ttctagaacg aggccacacc caaagcgagg gtgatagtat gcactcttgt      2820
     gtagaacatg caaaaaaagg aaaatctatt tatgtgcctg cacaatgggt aaccctagtg      2880
     agatgctcaa aagttaaggg taatccattc agagtaatag aagtttctta tgatgaattt      2940
     ttggatttta agcctctagt agaagataaa caatttaact tcaaaacatc taccaatggt      3000
     gatataatta agtggaatag tgtcaaagaa gtttttgttt catttgaaag tccatttgat      3060
     ttatgtttaa aatatgattt gaattctaca gattttatac atgttaatat attaaaaagt      3120
     aagcaaagag gtaggtatca gcctcatact aagccttcaa aagcatataa ggacaaatta      3180
     ccaattgaaa agtcaaaaca taatgattta ttatctctat gttccatggg ccttatccca      3240
     tctacttatc attcctttta taaagatctt ctatcaaaat aataattata ttttgatatt      3300
     ttttttttta ttatttttaa taataatgca taatttaagc aatatgcata caagttggtt      3360
     tattttattt taacatttta acattttgtt tattttggtg ctaatccaat tatcacgatt      3420
     aataatcttt taccaaatgt cttatgtttt tactttatta ttttgcaaaa tgcataaaag      3480
     ttgttttatt ttatttataa taatatacat acaagttggt ttatattttt tattttaaca      3540
     tagaattttt atttcaattt agtaattttg tactgttatt aattttgtaa tgaatataat      3600
     attttggact taatccaatt gtcactatta ctagtctttt accaagtttc ttaatatgtt      3660
     tttactttat tattttgcaa attgcataaa agttgtttta ttttatttat aataatatac      3720
     atacaagttg gtttatattt tttattttaa catagaattt ttatttcaat ttagtaattt      3780
     tgtactgtta ttaattttat aatgaatata atattttgga cctaatccaa ttgtcactat      3840
     tactagtctt ttaccaagtt tcttaatatt atgtttttac tttattattt tgcaaattgc      3900
     ataaaagttg ttttatttta tttaatattg taattttctt tattataata ttttaacata      3960
     agactgttat tagattcata attggtacta ataactacta ctagtctttt aacaagtctg      4020
     aatgtttttt tacttaaata tttctataat tattacacta attattataa tgtaaaaagt      4080
     ttaataaaaa attttggttt aattctataa cttttgattg ttaaatttat ttatcttcta      4140
     ttttaaatgg tatattatga ctaatcatta tgcatttcca caatatgagg gtcacttagg      4200
     tatttctctt aagggggggg gggggggctg taaaataagt gtttttttaa cacaaaaaaa      4260
     aaattggttg gcattgacgt ttcagatttt tttttggggg ggagtgctcc cccacccacc      4320
     atactaccac accaaccaca atcttcgcac tacccccccc ccccctaatt gacgcctttg      4380
     cattttcaca caaaaaatgt tgtaggtatg tagtagcggt ataataataa taatattatt      4440
     attcctataa atggtataca atttcccacg aaaaaagtcg taagtataga tacgacctaa      4500
     agaaatattt ttttaaggtc gtatctaaaa aaaaaaaatg aaggtttaat tttttttcaa      4560
     aatcgagaac ataataattt agagtatcct aaatgatgaa aatagtgatc ttcagatcta      4620
     aataaaaata aaaagcataa taacaaatta aaatcccaat tcattttgct cctcctgaaa      4680
     agttgataaa atcgagatac gacctttttc gttgcggtag gcg                        4723
//
ID   Sola1-1_BM  repbase;    DNA;    INV; 3740 BP.
XX
AC   BAAB01062465.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola1 DNA transposons from Bombyx mori.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-1_BM.
XX
NM   Sola1-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3740
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(712..1950,1954..2667)
FT                 /product="Sola1-1_BM_1p"
FT                 /translation="MNRSAQILKMVFSEDQENPVVYNKPIFSPLDTVRSLV
FT                 KSDVNNISNLNSHSYVSDSQIVPYFMKNDLPGPNNVDMEPTVNYSESVSSN
FT                 QIQLSDLQRPRLNKVVPESNCSSEYNDDNSKSEYSNSQNDFSSDDVDNDPD
FT                 FLYKDLELSSTSEDESITMSNRREKIIEIEQEKKKGRKRRAVPKEWKKNKA
FT                 KLLRNSGKAYLSSSKSKKLMKERELKPTCNDKCKLKCFNKISEEKRQIIFS
FT                 NYWKMADLEKQRQFINKYVKAIKPKYRYIREGSTRKDYNHAFYFEVDKEDI
FT                 RVCKTFFKNTLGISERPIRTVIYMQNSVVGGFLAGDNRGRHGNHNKLDSTV
FT                 IERIKEHINSIPRIESHYCRATTSREYIEGGLSIAQLHRDYVEKCRAESRS
FT                 YADYQIYYNIFSKEYNISFSPKKDQCEDFAAYDNAEDKQPLEDKYFSHLEE
FT                 KDLVRKEKELDKKNTNNKCIAATYDLQAVMPCPRGDISNFYYISKLNVLNF
FT                 TIYELGSKDVNCYVWHEGEGLRGVNEIGSCVLNYLRRLQEQSKEDFQVIFY
FT                 SDNCCGQQKNKFMIAMYIYAVTNLKNLTSITHKFLIKGHTQNEGDSAHSTI
FT                 ERNISRSLKSAPIYVPEQYITLIRTAKKKGNPYKVHELNHEISLTLKRLRM
FT                 A*"
XX
SQ   Sequence 3740 BP; 1435 A; 519 C; 575 G; 1211 T; 0 other;
     cgtcggttaa atagaaaagt gacatttctc aaaaatattg taaattaata ttatctgtta        60
     aaacgttttt ttatcgtatg tattttaata gaaaaatgac acatcatcaa attaaacgtc       120
     aaaaactccg tactgccaca agtgtcactt tgatactctg tggtaattcg ccattttcat       180
     tgttgaaaaa cgtcactctg ccatttgcaa cgcaaacgcg aacgtgcgaa cacggacgct       240
     tctcaagaac agtgacattt tccaaaaaag tgcttgaata caactgtaaa aggtaagtaa       300
     tatctacgaa ataatgtatt ttttcgagaa acgacgtttt tcaatttaat tttggtttta       360
     gttgtgccaa aagttttaaa gaagaatgta tttttttgac atgtgacatc aatttgagaa       420
     attatatgaa agaaatacga ccgattctac ttaggacatt tatctatata attatacatt       480
     tagctgtaat ataatagatt caatagaaaa tagttacaat ttgaaatatg actgtaaggt       540
     tcaaaaaata gattattgtt catgtttttt ttctaaataa agatttatct tttgcaatat       600
     ttacttaaag gcattttaca aaattgaaag tgcaatgttt ttgaatggac ttaaaaacaa       660
     tgtatttttt taaattaaat ctttatataa atatattcat ttatttttag gatgaatcgt       720
     agtgcgcaaa ttttgaaaat ggtgttctct gaagaccaag agaatccagt tgtttataat       780
     aagcccattt tcagtccttt agatactgtt cgcagtcttg taaaaagcga tgttaataat       840
     atatcaaatt taaatagcca cagttatgtt tcggattcac aaattgtgcc atattttatg       900
     aagaatgatc tacctggacc aaataatgtt gatatggaac ctacagtaaa ttattcagaa       960
     tcagtatcaa gtaaccaaat acaactttct gaccttcaac gtccacgatt gaataaagta      1020
     gttccagaat ctaattgttc ttcagaatac aatgatgata attctaaatc tgaatattct      1080
     aatagtcaaa atgacttttc atctgatgat gtcgataatg accccgattt tttatataaa      1140
     gatcttgaat tatcttctac atctgaagat gaaagcatca caatgagtaa tcggcgagaa      1200
     aaaataattg aaattgaaca agaaaagaaa aaaggaagaa aacggagagc tgtacccaaa      1260
     gaatggaaaa aaaataaagc aaaactatta aggaactctg gaaaagcgta tttatcgtca      1320
     tctaaatcaa aaaagctaat gaaagaaagg gaattaaaac caacttgtaa tgataagtgt      1380
     aaactgaaat gttttaataa gataagcgag gaaaagcgtc aaattatttt ttcgaactac      1440
     tggaagatgg cagacttaga aaaacaacgt cagttcatta ataaatatgt aaaagcaatt      1500
     aaacctaaat atcgctatat tcgtgaagga agtactagaa aagattataa tcacgcattt      1560
     tattttgaag tagacaaaga agatatccgg gtttgcaaaa catttttcaa aaatacatta      1620
     ggcatatcag agagaccaat aagaacggtg atttatatgc aaaactctgt agttggaggt      1680
     tttctagcag gtgataaccg agggagacat ggaaaccaca ataaacttga cagcacagtt      1740
     attgaaagga ttaaagaaca catcaattcc attcctagaa tcgagagtca ttactgtcgg      1800
     gctactacaa gtcgagaata tattgaagga gggctttcca ttgcgcaatt gcatagagac      1860
     tatgttgaaa aatgccgagc agaaagtcga tcgtatgctg actatcaaat atattataat      1920
     atatttagca aagaatataa tatttcgttc tgatctccaa aaaaggacca atgtgaagat      1980
     tttgcagctt atgataatgc agaagataaa cagccattag aggacaagta tttttctcac      2040
     ctagaagaaa aagacttagt caggaaagaa aaagaactgg ataaaaaaaa tacaaataat      2100
     aaatgtatag ctgccaccta cgatttgcaa gccgtaatgc catgtcctag aggtgacatc      2160
     tccaatttct attacatttc taaactgaac gtactcaact ttaccattta cgagcttggc      2220
     tccaaagatg tgaattgcta cgtctggcac gaaggtgagg gattaagagg ggtaaatgaa      2280
     ataggctcct gcgttttaaa ttatttaaga aggctccagg agcaaagtaa agaagacttt      2340
     caagttatat tttacagtga caattgttgt ggacaacaaa agaataaatt tatgattgca      2400
     atgtatatat acgctgtaac taatttaaaa aatttgacgt caatcactca caaattttta      2460
     ataaaaggcc acacccaaaa tgagggagat tctgctcatt ctactattga gcgcaatatt      2520
     tccagatctc tgaaatcagc tcctatttat gtaccagaac aatacataac attgattaga      2580
     accgcaaaaa aaaaggggaa tccctataaa gtccatgaac taaaccacga aatttctttg      2640
     acattaaaaa gattgcggat ggcataggac caaattatac aacaaatgaa gatagagaaa      2700
     aggtaaagat gggtgatatt aaagttatta aagtggagaa aaggtacaaa gaccgatttt      2760
     ttacaagtta tcttataaag aaaatgattt taaaactgtt gtcatcaaaa ctcgaacaac      2820
     caagaaaaat acagagttca cagaattaga acgtctttat tcctcaaaat taggcgtttc      2880
     taataataaa aaagcaggca tacttacact aatagataaa aatattattc ctaggtttta      2940
     taaaagcttt tatgaaaatc tatagatatc taaataatat cttatttcta agattgtata      3000
     gataagctta agtatttggg ttttggaatc catgagatat tgtttaatgt tactggaatt      3060
     tcaatgtttg tgttttttaa tactttggat aagtttgatt ctataaaata tgctttattt      3120
     gatttttgag actgataata taatttagtc ctatactaac taaacaagca ttcatattga      3180
     aatgtgatta agattattag atttagagta ttatatataa taataaaatc ttaatttaaa      3240
     tcaaactgaa cattatttac ttaaatatta taagaagact tcacttttaa ctatttgatc      3300
     tcaatgttgt ttccattgat aatttaataa gttcatttgc gacaagatac agatttgtta      3360
     attttcgaat tactattgaa tgttaattca taacactttt taaataaata tttactttta      3420
     taccacattt tatcttatta aaactgtttt tcgactacaa aaacgtttaa tttttgaaaa      3480
     aatacttatt cagtggtatt catttcatat gtggaaaaac gacacttcca gctagaattg      3540
     ccatattttt tattaaatta ttaaaaacaa ataaatcatc attatcagca tttaaatacc      3600
     tattaaatga tatacaaaac ttattagtta aaatctaaca gatgccgaaa aattaatttt      3660
     aataaaattc aatactttta actatgtgta ctgtaaagtt tggtcttttt gatttatgtc      3720
     acttttctat ttaaccgacg                                                  3740
//
ID   Sola1-1_CiLe repbase;    DNA;    INV; 2452 BP.
XX
AC   .
XX
DT   14-NOV-2019 (Rel. 25.01, Created)
DT   14-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   DNA transposon from the bed bug genome - consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-1_CiLe.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-2452
RA   Kojima K.K.;
RT   "DNA transposons from the bed bug genome.";
RL   Repbase Reports 20(1), 48-48 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 2-bp TSDs. 22-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           385..2190
FT                 /product="Sola1-1_CiLe_1p"
FT                 /translation="MNVHGFSDEEDEHLPASSKKRKVTGRLKDVNKKLRTQ
FT                 GHELGPPCHCKKYKCFEVVGEEDRKKIIKHFNLLNDWNEQSSHLTGLMSVT
FT                 PVTNRPVRKPDVEMNATLRTASFHYKVRMLRDDGVTEVPVCRKAFLSMHGI
FT                 TKARVVTIQNSLKDTGTSPKDRRGSHKNRPRKLPDATMSCIMSHIRSFRTR
FT                 LSHYSLMKSKKRYLPEELNVKKMYDMYCELFPGYKASYETYRSIFNSRFNI
FT                 SFGYPRTDTCSTCDNFAVKLKECTSPKEMKNLQTMKKLHLCKAQTFYDRKK
FT                 NEKQSCRKKVDCEAIVMDFNKNLPCPNIATNDVYYRRQLSLFSFNIHRLSD
FT                 NDVVXFAYXETVAKKGXDEVCSFLYYNVEHHLPQTVRHLAIFCDSCAGQNK
FT                 NWTVFRFLHYLVHTEKRLDSVTVMFPIRGHSYLECDKDMGLVNQKSCTEVP
FT                 QDWFDVLESARNKPRPFNVVRVDRSHVRDWTKFLEPLYLPKAPMKTRPLRE
FT                 LKIEAGHPRLVFHRDTYNGTMVNSLMIPNPRPAKRLKTSRRPGRETGGVTA
FT                 QSSKAGMLRPGEFQFAPRAYTSKLPISREKYNDLNHLKQFCGIRAQHFYEK
FT                 LPKK"
XX
SQ   Sequence 2452 BP; 746 A; 536 C; 513 G; 653 T; 4 other;
     tgaagagtac aggggaaaaa ccagctaact cgaattttgg tcgaaaatga gttgacagtt        60
     gctccttatg tatttcgagg tgccggatcc gatgcgactg tcagaactgg ggaaaaacct       120
     gcccaaatgt ctcaaaaaag cgagtgagta aacgccgcac aggggaagaa ccagctaacc       180
     tgagcgccac aggggaaaaa ccggctaacg tttggcactc gcttcttccc tccccactcc       240
     cttacgtttt cctcgaattg tttcctgttt ttttcctttc aaaatattga gtgtttgtta       300
     gttggatcag ttttctatat tcctcagtgc cgtttagtgt cgttttttct tgtttttggt       360
     tgttcctgat tgactgcggc tagtatgaac gtccatggct tctcagacga agaagatgaa       420
     cacctaccag cttcatcaaa gaaaaggaag gtaacaggta gactcaaaga cgtgaataaa       480
     aagctcagaa ctcaggggca tgaattaggc cctccctgtc attgcaagaa gtacaagtgc       540
     ttcgaagttg tgggcgagga agacaggaaa aaaatcatta aacattttaa tcttctcaat       600
     gactggaacg aacaaagttc tcatttgact ggactcatga gcgtcacacc cgtaacaaat       660
     cgacctgtaa gaaaacctga tgttgaaatg aatgccacac taagaaccgc cagtttccac       720
     tacaaagtaa ggatgcttcg ggatgatggt gtgacggaag tcccagtctg tcgaaaagct       780
     tttttgtcca tgcatggtat tacaaaagct agagttgtga caattcagaa cagtttgaaa       840
     gacactggta caagcccaaa agatagaaga ggttcacaca agaaccgtcc acggaaacta       900
     cctgacgcaa ctatgtcgtg catcatgagt catataaggt cttttcgcac cagactcagc       960
     cactactcac tcatgaagag caaaaaacgt tacctaccgg aggagttgaa cgttaaaaaa      1020
     atgtatgaca tgtactgcga actatttcca ggctataagg caagctacga gacgtatcgt      1080
     agcattttca actctcgttt caacatcagt ttcggttacc cccgcaccga cacgtgcagc      1140
     acttgcgata attttgcagt caagctaaaa gaatgcacct cccctaaaga aatgaagaat      1200
     ttgcagacga tgaaaaaact tcacctgtgt aaggcacaga ctttctatga cagaaagaaa      1260
     aatgagaagc aaagttgcag aaaaaaagtc gattgtgaag cgatcgtcat ggacttcaat      1320
     aagaatttgc catgcccgaa catagccaca aatgacgtat attaccggcg ccagctgtct      1380
     ttattctcat tcaacattca ccgattaagt gataatgacg tggtattktt tgcgtackct      1440
     gaaactgttg ccaagaaagg akcggacgag gtgtgttctt ttttatacta caacgtsgaa      1500
     catcatttgc cccagaccgt acgccatctc gcaattttct gcgactcttg tgctggccaa      1560
     aacaaaaatt ggactgtgtt ccgatttttg cattaccttg ttcatacaga aaaacgacta      1620
     gactctgtaa cagtaatgtt ccccatccga ggtcactcct acctggaatg cgacaaggac      1680
     atgggtttgg taaaccagaa atcctgtact gaagtgcctc aagactggtt tgacgttctg      1740
     gaatcagcac ggaataaacc acgacccttc aacgttgtgc gggttgatag atcccacgta      1800
     agagactgga cgaaattcct tgaacctttg taccttccga aagcaccgat gaaaacaagg      1860
     cctctcaggg agctgaaaat cgaagctgga catcccagac tcgtttttca tcgggatacg      1920
     tacaatggaa cgatggtcaa ctcactgatg atcccaaatc ctcgaccagc gaagagatta      1980
     aagacttcaa gaagaccagg tcgtgaaaca ggaggagtca cagctcaatc atccaaagcc      2040
     ggaatgcttc gaccgggaga atttcaattt gcaccacgcg cttatacctc taaacttccg      2100
     atttcaagag agaaatataa cgatttgaac cacttgaaac aattttgtgg gatccgggcg      2160
     caacatttct acgagaagct gccaaaaaaa tgatgtattt taactcaaga gctggttttt      2220
     cccctgaatt atgtgagttc acaaagttat tgttgtcata ttgattaaaa acgaattttt      2280
     tttttcaaat ttctttggtg ttccttctca aggtatatct caagatagaa ataccttttt      2340
     cctggatttt tttaccgttc tgtatagcgg tcgtagcgtt ttttgcacaa aaatgcgttt      2400
     ttcacaaaat gataaaatca tgagttagcc ggtttttccc ctgtactctt ca              2452
//
ID   Sola1-1_DK  repbase;    DNA;    INV; 2996 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 17.07, Created)
DT   03-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   Sola1-type DNA transposon from the Drosophila kikkawai genome:
DE   consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola-1_DK;
KW   Sola1-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-2996
RA   Jurka J.;
RT   "DNA transposons from Drosophila kikkawai.";
RL   Repbase Reports 12(7), 1177-1177 (2012).
XX
RN   [2]
RP   1-2996
RA   Kojima K.K.;
RT   "Classification as Sola1.";
RL   Direct Submission to Repbase Update (03-JAN-2019).
XX
DR   [1] (Consensus)
XX
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
CC   [2] renamed from Sola-1_DK.
XX
FH   Key           Location/Qualifiers
FT   CDS           1048..2445
FT                 /product="Sola1-1_DK_1p"
FT                 /translation="ENIQSLSKFVYENIKYFSNGYPARIKKTNSCATPKKK
FT                 TPHNKTDVSNIEIVKDFIKKLPAVPSHYCRKNNTKVYLPSELRNVSNLYKL
FT                 YISYLNDQGLNDTSVSCPIFRKVFSTEFSIGFHLPKKDKCTICENIKYANE
FT                 EEREKIISSEEYQNHIRNKKLSMSMFLKDQDDSKMCQQFLCVSFDLQKVLH
FT                 TPFSKNITLFYSRKYAYYNLSLYESGTRNGYCFLWGEVDGKRGCNEICSAL
FT                 LKYLIILDSKKKTEHLSLYCDSCAGQNKNQAVIAMLIYFLSSSTFLKTIKI
FT                 TYLLPGHTMMPVDSVHSTIESFIRNRNVWAPSEWPTLIGNARTNPTGFTCV
FT                 ELQYTDFKNWKLFSNSLLKHKTLHLSKLRIAVINKCPLSIEFNYEYFENSN
FT                 KYFFNLPNPTQTIKSLYKSKLSISKKKFDDLNNLCKQNSIPPRYHNEYTSL
FT                 RHSSKILDCLNETDEEDDIVV"
XX
SQ   Sequence 2996 BP; 1074 A; 433 C; 473 G; 1013 T; 3 other;
     cgacgcattt tcgcgaaagt atcgtatgtc gctttttttc gaaattgaga ttttaatgca        60
     aaattgttag gnacctaatg tctcactacc ctgtgaaata ttataactga aaaccctata       120
     gttccgataa aaattaagtt tcaattttgt cntatnctac agtgcttttc aatgtgcgcg       180
     cgaaattatc gtatgtcaat acaatttttt tttttcattt gcatggaaat acttcaaacg       240
     cacaaaaata aagaaataca ataacaaatg attttgctta ttgtttgttc ctctttatgc       300
     cgttagttct cggtgtgcgt tttgatatcc actgatttta ctactgataa gtgaagatgt       360
     tagagcttta attagagttt tagagtttga gttttagtcg ttgtttggtt ccaagtgcat       420
     caagttcgtt ttgcagaaca atttattaaa tatggaaacg gctcaagaaa gagtaagtat       480
     tcagttttgg ctttagttaa ttattgttca gttatcgtaa tattcgctct ttgtatacta       540
     attaatattc gtatgagata tttaaataat tgtttatatg aacttgtagt tgtatatcta       600
     cgtgtaagtg agtattcgtt attgcataat atgtgtcgat taacgtcatt gaaattgatt       660
     ttaactaaga aaatgttcaa aattatagcc cgtgaactca ttagtgccgt atagcgatag       720
     cgatgacaat gacgaagagt gctgcgttgg agaacgtggt cttaaaagga agtttgccaa       780
     gcaagatgtt caaaaattta aaataaaaaa tgcagtgctt cccaatccat gtaaattaac       840
     gaaatgtggt aacgattgct tatcagtgcc agaacatgct aggcaaaaca tcaatgagct       900
     ctactgggga atgtcgaatg aaagaagggt gacgtggcta ctgtccaata taaagcgcaa       960
     ggaggtaaaa aaacggcgag ctggactgaa aacgaagtgt gtgcataggc gcaattggac      1020
     cttcgaatat tcattttcga gtaatgagaa aatattcaaa gtttgtcaaa atttgtttat      1080
     gaaaacatta aatatttctc aaatggttat ccggcacgca ttaaaaaaac aaatagttgt      1140
     gcgaccccaa aaaaaaaaac accacataat aaaactgatg tgtctaatat agaaattgta      1200
     aaagatttta taaaaaaatt accagctgtg ccttcgcact attgccgcaa aaataataca      1260
     aaagtttatt tacccagcga attgagaaat gtatcaaatt tatataaatt gtacattagt      1320
     tatttaaatg atcaaggctt aaatgacaca tcagtttcgt gtccaatatt tcgaaaagtc      1380
     tttagcacag aattttcaat agggtttcac ttgccaaaaa aagataaatg tacgatttgc      1440
     gaaaacataa aatatgcaaa cgaagaagag agagaaaaaa ttataagttc ggaagaatat      1500
     caaaatcaca taagaaataa aaaacttagt atgtcaatgt ttctcaagga tcaagatgac      1560
     agtaaaatgt gccaacaatt tctttgcgtt agttttgatt tacaaaaggt cttgcataca      1620
     cctttttcaa aaaatataac ccttttttat tcacgcaagt acgcatatta caacctcagt      1680
     ctatatgaaa gtgggactcg aaatgggtat tgttttttgt ggggtgaagt cgatgggaag      1740
     agaggttgta atgaaatctg ctcagctctt ttaaagtatt taattatttt agatagtaag      1800
     aaaaaaacag aacatcttag cctctattgt gacagttgcg ctggccaaaa taagaatcag      1860
     gcagtgatag caatgttaat ttatttctta agttcctcaa cttttctaaa aactataaaa      1920
     attacttatt tattgcctgg acacactatg atgcccgtgg attcggtaca cagtactatt      1980
     gaatctttta tacgaaatcg taatgtatgg gcacccagcg aatggccgac acttattgga      2040
     aatgctagaa caaatccaac cggctttaca tgtgtagagt tacagtacac agactttaaa      2100
     aactggaaac tattttcaaa ctctttatta aaacataaaa cattacattt aagtaaatta      2160
     cgaatcgctg ttattaataa atgcccatta tcaatagaat ttaattatga atattttgaa      2220
     aattcaaaca agtatttttt taatttgcct aatcccaccc aaacaataaa atccttgtat      2280
     aaatctaagc taagtatttc gaagaaaaaa tttgatgatc ttaataattt atgtaagcaa      2340
     aatagtatac ctcccagata ccacaatgaa tatacaagtt tgagacattc ttccaaaata      2400
     ttagactgtt taaacgaaac agatgaagaa gatgatattg tggtttaatt tttcataaat      2460
     atattacaaa tattttgtat ataatgtata tataatgttg ttaattaatc taatttctaa      2520
     acacaatttc tcaataaaat tcctatttcg cttaatattt tgtatataat gtatatataa      2580
     tgttgttaat taataaaatt tctaaacaca atttctcaat aaaattccta tttcgcttaa      2640
     tattttgtat ataatgtata tataatgttg ttaattaata aaatttctaa aaataatttc      2700
     ttaataaaat tgtactttcg tataatatca aattttatta tcgtatgtcg cacgttgtgc      2760
     gcaagggtat gaaaacaaag cgtgcgaaat tatcgtatgt aatttcattt ttattttttc      2820
     atgaagtgtt gcctttaatg acaaaaatta agtttccatt cgttattgta gctaaaacca      2880
     cgtaacctta aaaaatattt ccatgatttt ctcattccta agagactaaa tcaaaaaaaa      2940
     gcttctcctg taaaatttga tttttcgaca tacgatactt tcgcgaaatt gcgtcg          2996
//
ID   Sola1-1_LMi repbase;    DNA;    INV; 3424 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3424
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3290-3290 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1308..2735
FT                 /product="Sola1-1_LMi_1p"
FT                 /translation="MYVKTALSKKINGGLIEPDQRGKKVPPNKLDEEIRDG
FT                 IRNHIRMFPTIESHYSREKTGRLYLGSHLNISKMYSLYVEHCKENEMKQEL
FT                 IAKQWLYRDIFNIEFNLGFKEPATDTCDDCDEFQVKLKNDITAEEAVQIKS
FT                 DYDAHLSEADIRYKNKTFDKNRSKQPGSKAKVVMFDLQKCLPTPHLTNSSA
FT                 FYLRKLWTYNLTILDASEQKSYCCMWDETVAGRGPKEVSSCLLKWALANLP
FT                 KTQTEELTIWTDNCGGQNRNFPMIMSYFWILRCLPNLKVINHKFLLKGHTH
FT                 MEVDGVHAVIERAKSKLSPNDIIATPWDWQQFVRQCRFKELIEVYDMQMAD
FT                 FKDFESLFKGSSSPLVKRTTKSLSSGKFLVSQVVHLQVRAENSGSVFYKTA
FT                 FDGEFQEIDVQRRTRGAVWPEELPAIRNTLRPIATEKYKDLQKLLRWVPES
FT                 FHYFYQNIPQIMSTQTEKDSEGYEHDDVVIN"
XX
SQ   Sequence 3424 BP; 1136 A; 576 C; 688 G; 1024 T; 0 other;
     ctggacgtca gaggtaacct atcgtaagtg caaaaatgac gattttgagg tttttatcgt        60
     atgtggctag tttaagtcat accttcttag gggtagaata ctgtatgcat atattttaca       120
     taaaagaaat tcagcaatgc gatactatcg tatttgcaat ctgaaaccag tggtaaacaa       180
     tggtaaatga ccatacgaca attgacctga atatagaccg ccacgctctt tatcgtattg       240
     gctgttacga tggtttacct ctaagtgtta cgttacttcc gtattgttat acacattgtt       300
     aatcacgtgc gaatagcagt gtgctgtagt ttgtgatgtt tggaggagca ttttatgacg       360
     gaatcgaaga ttaaaatgga ttctattagt ggaagaagta aaaggatcgt ggaattagcg       420
     ctgaagttag tacaggtaag cagtacaagt atttctagta cttcaagaac taatattcta       480
     ttctacagtc tcattacatc atcagcttac aacattaaat cattatgcat agctaatata       540
     cattttaaga tattattcat catactggga tgtaacaaac atctaaatgt acgttccgcg       600
     atttaggaga caaatgatct ggatgcttta ccaccagtcg acggtagtaa tgtcgtcgaa       660
     actccgcagt ggcgctcctt ttgacgaaat aagtttatca ttatcgctta cttactagga       720
     aatgcagtgc gactttgggt gctagacctt accttagacg ctgatggaat tgatttttgc       780
     taacaactta gagtcttcat cacatccggg gactgaaaat gtgataatgg aggcgtgatt       840
     gcttcatcaa atgttgcatc taatgccttg gatgacattc atacatttac tacactagaa       900
     tcagaattta caagaggccg gaagcgagtg cggcaagaaa atagtggaag tgcaatataa       960
     ggaaaagatg tagagaggct ggtgcggagt atacatctaa aaccggaacc tagttccggc      1020
     aaaatgtatt aagcctgcct gcaaatcttc atgtaaaaga aaatgttcag aaaacattac      1080
     ttctgaagat aggcagcata ttttcaacag tttttggaga agggaataat aatgatttta      1140
     agagattata tgttgcctca cacgtaattg caaaaaatgt tagtagaaga gtagttcaag      1200
     agagggagtt taggcgtaat gtgacacttc attacttctt tgaagttcgt ggccagagac      1260
     tacaagtttg caaaacattt ttcttaaata ctttgagtat ttccgaaatg tatgtcaaga      1320
     cagctttgtc caaaaaaatt aatggtggac ttattgaacc agaccagaga ggaaagaaag      1380
     ttccaccaaa caagttggat gaagaaataa gggacggtat cagaaaccac atcaggatgt      1440
     tccccacaat cgagagtcac tacagcagag agaaaacagg tagattgtat cttggcagcc      1500
     atctcaatat atcaaaaatg tattctttgt atgtagagca ctgcaaggaa aacgaaatga      1560
     agcaagagtt aattgcaaag cagtggcttt accgtgacat atttaacatt gagtttaatt      1620
     taggattcaa ggaacctgcg actgatacgt gtgatgactg tgatgagttt caggtgaaac      1680
     tcaaaaatga tataacagct gaagaagcag tccaaattaa atcagattac gatgcccact      1740
     tgtcagaagc agatataaga tataaaaaca agaccttcga caaaaatcgg tcaaaacaac      1800
     ctggatcaaa agcaaaggtt gtcatgttcg atcttcagaa atgtttgccg acacctcacc      1860
     ttactaattc cagtgcgttt tatctaagaa agctctggac gtataatctg acaatccttg      1920
     atgcttcaga gcagaaatcc tattgttgca tgtgggatga aacagtagca ggtcgtggac      1980
     ctaaagaagt gtcatcttgt ttgctaaagt gggccctagc taacctgcca aaaacccaaa      2040
     ctgaggaact tacgatatgg actgacaact gtggaggcca gaatcgtaac ttccccatga      2100
     ttatgtcata tttttggatt cttaggtgtc ttcctaatct taaagtgata aaccataaat      2160
     tcttattgaa gggacacact catatggagg tagatggtgt acatgctgtt attgaacgtg      2220
     ccaaaagcaa actgagccca aatgacataa ttgcaactcc ttgggattgg caacagtttg      2280
     ttcgccagtg cagattcaaa gaactcattg aagtatatga catgcaaatg gcagatttca      2340
     aagactttga aagtcttttc aaaggatcat catcaccttt agttaaacgg acaaccaaaa      2400
     gtttatcgtc tggaaaattt ttggttagcc aagttgtgca tctacaagta cgagcagaga      2460
     attcaggttc tgtgttctat aaaacagcat ttgatggtga atttcaagag attgatgtgc      2520
     aacggcgaac aagaggggca gtatggccgg aagagcttcc tgctatacga aatactctca      2580
     gacctattgc tacagagaag tataaagatt tacaaaagct gcttaggtgg gtgcctgaat      2640
     cttttcacta tttctaccaa aatataccac agattatgtc aacacaaact gaaaaggact      2700
     cagaaggata tgaacatgat gacgttgtta tcaattaatt gtacaaggga attctttttc      2760
     tacatttcga attttgtcct caatttgtta atgaatatat gctgaatttg gacagaaatg      2820
     tttgtcattg tctcagtttt taaagtggtt taacctttgt tactttctag agtaagctac      2880
     tatggttgga atttattttg ttcaatttac ttaaactttg ctgagtgact agtatttgtg      2940
     actggctttg tgaaaggata aaattgtaac tcttaataaa tctactggta ttcaataagt      3000
     atgaatgcct ttatttctta atttcagtac caataattct catattccta ttcgtatttc      3060
     gtagaataat cctgtataat aaagataaac atttataaac ataaaaaggc atgcaaatga      3120
     acagcaaacc taatgtaata agcaccttga caatatcgta tgtgtaaata aagacggctt      3180
     cacaaatata tttatgtgag gtaaaatatc gtaagtgctg tttctcccgt aacatttcat      3240
     aaaatatttc taaaaacgaa gtacatgtag agactaacta gaaaagatat aaaaattaga      3300
     gctcttcatg attgggtatt tgacttattc tacaggtagc aaaatccgag tcgcagcagc      3360
     ttctttttgc tctcctgtaa agtcagcgaa atgttactta cgataggtta cctctggcgt      3420
     ccag                                                                   3424
//
ID   Sola1-1_RPr repbase;    DNA;    INV; 1009 BP.
XX
AC   .
XX
DT   09-AUG-2012 (Rel. 20.10, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola DNA transposon: consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; nonautonomous;
KW   Sola1-1_RPr.
XX
NM   Sola1-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1009
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3331-3331 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 1009 BP; 354 A; 185 C; 199 G; 271 T; 0 other;
     gaggcgctca gcgcaatagt ggcccaaccc acaaaaatgt gaaaactgag atatcaacat        60
     gtttgcactc accatatgct aatctatgag tgtaatattg gcccaaccat aatactggcc       120
     caacccacct tctcagtcta ctcaacagat gacatggaaa gtgtgttatt gcacagaaga       180
     aaatcacagc atctggaagg caactagagg attgcaaagt tcaaaaagaa cttcatttaa       240
     gaaaagctga gtccgccaga gctggaatga aggccgatgc tgaagtaggc aaaccagaaa       300
     atgatgtcac agttatagcg tttgatctaa tgaaaacttt gtctacacca gttctctctg       360
     tgggtatgtg ctattataaa agacagctct ggacatattg tctagggatt cacaatctca       420
     ataaccagga tgcttgtatg tatgtctggg atgaaggctt caaggggtcc tcaagaaata       480
     gggtcttgca tcttgcacta tataaaggca tttgtaaaga caagcaaact tatgatgtac       540
     agtgatcaat gtggaggtca gaacagaaac attaataaca ttaaaagaaa agaagtgcag       600
     caacagaaga ccctggttta ttactgggaa gttctgatga agaagaagga agtggataag       660
     atgtgaaaag tattcataaa gaatataacg tattatcttc ttaagacaca tattaccgga       720
     tttttagcat tataatataa gcctatccca catattttcc caaatcaact gaaatcggat       780
     attgcaatag tggcccaacc cacatgtact agcaagaatt gtttgtttta atgtaccaat       840
     ttaatgcata agtgaaaact aggtactaca ctgcaatata tgataaagtt ttggaattta       900
     cttgaaaaat cactgccata aataaataca gattttcatc aaactttcaa atctacttta       960
     cccaataagt acttcagtgg ggttgggcca gtattgcgct gagcgcctc                  1009
//
ID   Sola1-2N1_LMi repbase;    DNA;    INV; 750 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 19.12, Created)
DT   02-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-2N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-750
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3291-3291 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus.
XX
SQ   Sequence 750 BP; 242 A; 123 C; 132 G; 253 T; 0 other;
     tgaggagcat cgtttcaaat cgtattaagt ccacccgtgg acaaaattga gtttgataca        60
     tttttgtata gtttacatag cgatctttca tgctgtcaaa tcagaatgta acaaatcgga       120
     ttcactaaca gcgtaaattg cgtctgtaaa gtagctgttg tttcaaatcg tattcagtcc       180
     actgtagcgt gtgtttcaaa tcatattgtg tccagcgtga agcagtattg tcactttgct       240
     ctgttggcta tgctgacagc tggcgcgcta ttttcaacaa tgctacgcat tcaataatca       300
     cagttatatt gtgaactttg tgtaagagag tagtttttcg attatggagg aagaaattgc       360
     tgttggtgat aattcaacgg gaagccgaaa gaggggaaag aaaaccaaac atgcccatca       420
     acttaaatct gaggcagtta atgttattcc ataaagaaac aaaaataaat gcttagttat       480
     atatttacca cagtaatcgt tttttatttg tatattttac aaattattgg atcaaagcat       540
     attaagtcca acacattttc tttaaatttg aagaacacaa caggaaattt attttacttt       600
     ttcacgtacc tagaagtaca cctcaaataa aacaactgca aaattttaaa atttgtgaaa       660
     tgttcctcag gttacgagta atcagttttt tgcttctcct gtaaaattta gtttttttgg       720
     acataatacg atttgaaacg atgctcctca                                        750
//
ID   Sola1-2_AA  repbase;    DNA;    INV; 2912 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola1 DNA transposons from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-2_AA.
XX
NM   Sola1-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2912
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(374..1018,1056..1604,1608..2498)
FT                 /product="Sola1-2_AA_1p"
FT                 /translation="MSALKLLQVYGSESEGESSDEEFIGFGDSDDQFPANN
FT                 SKHTAMWNALSAINLRHPENHPSDSAEMESGTERDDLSGSDEEDRGSDGSF
FT                 FQLEKRKRKQTKRQKLKEKRTKRRRLSHKLRIVKCGCKKKCDQIFSKDERV
FT                 NIHSRFWKLEPNEQCNFIRENVHRSSVQTRRTNRTVANHPKKNFSYTFNLS
FT                 LINGEKLKVCRKFFLAVIGYGENCGLFSCLSFRNIIYRCLEHDFDGNPNPT
FT                 KRGKYERSKAKREAVKTHILSYNPSVSHYRREHAPHRFYLPSDLTEASMHQ
FT                 AYQDSASPALRVSYQFYCSMISKMNISLVKLGHEQCEVCVTATLHQNSSGH
FT                 KEEDRFVTVCSTCKSHVEHSRLKNLSRADYQNDGDQIRAKEIVFSVDLQKV
FT                 NFFELSINKLHQTIRFFIVLQVIQLPRLEGLKSIVFTQRVLAFNETFAPVG
FT                 EYAKTYPVVACVWNESTSGRSAGDIASCFGKVVLWCQEFEKITFWLDNCSS
FT                 QNKNWNLFLYLTLLLNSEKVKSNEIILKYFESGHTFMAADSFHAAVEKGMR
FT                 HGSPASTFPEFKDVVQKAKKNVVAMDMAATDFFELRMTVSQYLLNQCKPRP
FT                 YIENIRKIKLKKGSYEMSYSGSLDDDVESTSCCIFSKKQMKTVTDDSFELE
FT                 SILSRRKVPVGICPTRKQALLRVILPVIEEHQKKFWIDIPERQET*"
XX
SQ   Sequence 2912 BP; 939 A; 556 C; 600 G; 817 T; 0 other;
     ctgcccctct ttgcacaaca gtcccatgtt ggaaaatggc aaactgagaa aatgacgatt        60
     taaatgtaca aacaactttg cttcatctcg tgtctccact tgaattaaaa tgtgttatat       120
     ttttaaataa tcactgtttg ttgagtgcac gaactaccct gagaattttt tattgaataa       180
     aactggaact ctgtttaaaa atgtacaaat agtaaagtga gactgacatg cgaagatata       240
     caatataata tgccaatata attgcatatc agtcccattg tgatcatcgt cttgtttgac       300
     agctactgtt tggctaccgg ttgcttagtt cgctgttcgc tgttttcagg ctgtgaaatt       360
     cagtaattat acaatgtccg cgttaaaatt attacaagta tacggaagtg aaagtgaggg       420
     tgaatcctcc gatgaagaat tcatcggatt tggtgatagt gatgaccaat ttccggccaa       480
     taattcaaaa cacaccgcga tgtggaatgc gctttccgct atcaacctga gacatccgga       540
     aaatcatcca tcggatagcg cggagatgga atccgggaca gaacgtgacg atctatcagg       600
     cagcgatgag gaagatcggg gatccgatgg aagctttttt caattagaaa aaaggaagcg       660
     gaaacaaaca aaacggcaaa aattaaaaga aaagcgcaca aaacggcgac ggctcagcca       720
     caagttgcgc attgtaaaat gcggatgcaa gaaaaagtgt gaccagattt tttccaaaga       780
     cgaacgcgta aatatccaca gccgtttctg gaagctagaa cccaatgagc aatgcaattt       840
     cattcgggaa aatgtgcacc gcagctcagt gcaaaccaga cgcacgaacc ggaccgtagc       900
     aaatcatcct aagaaaaact tttcatatac tttcaacctc agtttgataa atggtgaaaa       960
     attgaaagtc tgtcgaaagt tttttttggc tgtcattgga tacggagaaa actgcgggta      1020
     agttcaattt aaatggcata ttttaaaacg aataattatt ctcttgttta tcttttagaa      1080
     acatcattta tcgatgcctg gaacatgatt tcgatggaaa cccaaatccg accaaacgag      1140
     ggaaatacga gagaagcaaa gcaaaacgtg aagccgttaa gacccacatt ttgtcttaca      1200
     atccgtctgt ctcgcattat cgtcgggaac acgcgccgca tagattctac cttccatccg      1260
     atttgacgga ggcttcaatg catcaagcat accaagattc agccagtccc gcattacgag      1320
     tcagctacca gttttattgc agtatgatct cgaagatgaa catttcactt gtaaaactcg      1380
     gtcatgaaca atgcgaggtt tgtgttactg caacgctaca ccaaaactca tcagggcaca      1440
     aggaagagga tcgtttcgtt acagtgtgtt ctacttgtaa gtcgcatgta gaacattccc      1500
     ggttgaaaaa tctttctcga gctgattacc aaaatgatgg ggatcaaatc cgggcaaaag      1560
     aaatagtgtt ttcagtggac ctgcaaaagg taaatttctt tgaataattg tctataaata      1620
     aattacatca aactattcgg ttcttcatcg ttttacaggt tatccagcta ccacgtcttg      1680
     aaggcttaaa atcaattgtg ttcactcaac gtgtgttagc ctttaatgag actttcgcac      1740
     ctgttggtga atatgctaaa acatatccgg tcgttgcatg tgtatggaac gaatcaactt      1800
     cagggagatc tgcgggcgat attgcgagct gtttcggcaa agttgtattg tggtgccaag      1860
     aattcgaaaa aatcactttc tggctggaca actgttccag tcagaataag aactggaact      1920
     tattcctcta tttgacgttg ttgttgaatt ccgaaaaagt aaaatcaaac gaaataatcc      1980
     tcaaatattt cgaatccggc cataccttta tggcagctga cagctttcac gctgccgtag      2040
     aaaaaggtat gcgccatgga tcgccagcct cgacgtttcc agaattcaaa gacgtagtcc      2100
     agaaagcgaa gaagaatgtt gttgcgatgg acatggcagc tactgatttc ttcgagttga      2160
     gaatgacggt gtctcaatac ctattgaacc agtgtaagcc tcgaccgtat attgaaaata      2220
     taaggaagat caaattaaaa aaaggcagct acgagatgag ctacagtggc tcattggatg      2280
     atgatgtcga gtcgacatct tgctgtattt tttccaagaa gcagatgaag acggtaaccg      2340
     atgatagttt tgagttggaa agcatcctat cgcgtcgaaa agttcctgtt ggaatatgcc      2400
     ccacccgcaa gcaagcgctt ctcagggtaa ttttaccagt catcgaagaa caccaaaaga      2460
     agttttggat cgatattcca gaacgccagg aaacataaat cgaagcataa aaattcttcg      2520
     aagcagacgg gaagtgatta atctttaatt attttttgtt tcatattatc gaacatgctg      2580
     ttattagaat taaaaataaa cactcatgaa tttcaaaaat atatctgaaa caacgcattg      2640
     tcgcattatc ttattatcgt aatcatatgg catttgaaaa aaaaatatcc cgtatcattt      2700
     cgtttatatt cagtgaatca ctaacaatgt gactgttatg cgattatttg caatatggga      2760
     caacaccatt ggggtttgtt tttgtacaag tcaggaacaa agactactat tttatcattt      2820
     tttcttgagc gtctaacgat gttaagttga tttatgcaaa aaacgcaaat tggtcaaaag      2880
     tcaacatggg actgttatgc gaatatgggc ag                                    2912
//
ID   Sola1-2_AP  repbase;    DNA;    INV; 4812 BP.
XX
AC   AC202215.4;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-2_AP.
XX
NM   Sola1-2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4812
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1581..3674
FT                 /product="Sola1-2_AP_1p"
FT                 /translation="MDVEIITDVQPLKYIEEKIVNNTIMIEISNETNTSYM
FT                 NTELFQNNNNITTKDAETDFRPLNLYTERILTNQILIEPNTSTVDANLILE
FT                 NTDFLPLMESVSNVSINNDPEYIDPITETNGGRKRKIQNKRKEKQLQRNII
FT                 PRELELKCNHTEMIKKNVCRVSELSEEDLTDFKHNLCKLTTKIEQDKFLIT
FT                 MMTVSDVKRTDRKKTNRSHRMVVKYFIPQIRGNLIPVCLDAFSSVTSITRR
FT                 RLNIISKTFKQNHSSPTEKRGGIRVDLIQDEITDSIKEHIKAFKCRKSHHT
FT                 RKDTGRSYLPPTYSIKYMWENWYEKRKLEKKQTASLSKYQKIFTTKFNISF
FT                 GHPRQDTCSYCMEQKIKIQTEGDIDKKSELMLELTLHKRKAKRFFELLKTE
FT                 TPGEISCSFDMMQTQPLPKLSVTDVFYSRQVWLYNLTFVISDSNQKPENCI
FT                 LYSWNETESGRGPNEVCSALIHFLESLEKRLKTSESPPTILNLFSDSCSGQ
FT                 NKNQFTMITLLYYINYKATVFTQINHIFPVRGHSYMPPDRVFGRIEQVLRK
FT                 KETILSPNQYFEIFKNFCTVNAYGKDFKIYDIKSAVKTVVKTKIDFKSTEQ
FT                 KVYSYVKGKNSSIRVSKTYAGAYEEFEVIKRHSDISKLFNNIKILPKTNYV
FT                 KLPKQNDVKKLLKFFTIPEDAQEFYEDIFNNNDDPSDEDIHYYEEDNE*"
XX
SQ   Sequence 4812 BP; 1910 A; 552 C; 623 G; 1727 T; 0 other;
     gaggggcgac aatgcaaaac gtgctattgc caaaaatata aaaattgagt tatacatcat        60
     ttctgatagt aaaaaccacg cagaatcgaa tggcgtgttt agatttggcc aaaacgtact       120
     atttccagtg catatttgat cataaagttt catgatttct gcataacgca ccatttccat       180
     cgctaaaatc gtttcaaaaa gaactatttc caaattacat caaaacgtac tatttcccat       240
     gctatttagt gtaaatttaa taattattaa agcaaaacgt actatttttt aaattatgtg       300
     cagaacgtac tatttccaga ttgaaacaaa acgttatatt tcccatgtta aaatgtagct       360
     atactaaatt aattatttgc aaaacgtact atttccaaga gtaaaaggtg aagttgacat       420
     ttcaatttga attaattatt ctttaattat ttcatggtga tataatatgg gactacatta       480
     ttttatttta tttactagtt ggtgcaactg aaaaaattca gtataagtct tggtgttgaa       540
     tgttatcaca aataatttcc ctccaaaagt ttgtatgatg actatcatag tattatgata       600
     atacaattca tctactgtaa gttctctcat tctctgtact ggttcattgt tatttgtttt       660
     aattacctac taataattgc atgtacattt tacgagacat tttattaatg ttttattagt       720
     aggtatttaa aatgttcaac tctagaacca ttaaaatggc cgcatgtggt ttaaacaaaa       780
     ataaaaatga tactcaaact aaagaagaaa tggatattaa tgaatccatt aaaaaagttt       840
     caaggtggtt agaggtatga aaaaatgaat ttatttgttt acaactttat ttatgtaaga       900
     cttttaatta ttatattgtt aaatcattga acagtaggta aatactgtat acttatgtat       960
     tactgtgata cctacctaat aatttgtagg aatacctatt ttaaaaaata aaataatttt      1020
     ataatatttt aattattcta ttaaattgat ttcatagtag atgaattatg taatagaata      1080
     ttatgcagaa taaattgaaa aatagttaaa ttcataataa atgtatgctg ggtattactt      1140
     taaatactat ttaataataa aaatacctag ttcttttgat tttgtatcat agctgttatg      1200
     ttttatttta tttatattat tatttactat aacttactat ggttggtcca atttatcaaa      1260
     taattaagat tatgctataa aatttaactt aaatctattg aattctatat atttttatta      1320
     ttagggtaga caatttaaat tatataatat attgttattg gtaaacctaa atatctaata      1380
     gattatattt acaattaaaa tctttaagta ttataataat aattctaata caatattatt      1440
     tgtattaatt ttttttttta cacattaaat attaagttaa tatattatat ttaaagaaat      1500
     atatttaata ttataataat aactaaattt aggaaactgc tgatttgaac tattctgtac      1560
     caaacctaaa tattgaagac atggatgttg aaataattac agatgtacag cctctaaaat      1620
     atatcgaaga aaaaatagta aataatacaa taatgattga gatctctaat gaaacaaata      1680
     catcatacat gaatacagaa ctgtttcaaa ataataataa cattaccact aaagatgctg      1740
     agactgattt tagaccatta aatttatata cagaaagaat attaactaat caaatattaa      1800
     ttgaaccaaa tacatcaaca gttgatgcta atttgatttt agaaaatact gattttcttc      1860
     ctttgatgga atcagtatca aatgtatcaa taaataatga tccagaatat attgatccta      1920
     taactgaaac taatggaggt agaaagagaa aaattcaaaa taaaagaaaa gaaaaacaat      1980
     tacaaagaaa tattatacca agagaattgg aattaaaatg taatcatact gaaatgataa      2040
     agaaaaatgt atgtagagtt agtgaactat cagaagaaga cttgactgat tttaaacata      2100
     atttgtgtaa attaactaca aaaattgaac aggataaatt tctaattaca atgatgactg      2160
     taagtgatgt caaacgaact gaccgtaaaa aaactaatag atctcatcgt atggttgtga      2220
     aatactttat accacaaata agaggtaatt taataccagt ttgtcttgat gcattttctt      2280
     ctgttacatc aataactaga agacgactaa atataataag taaaacattc aaacaaaatc      2340
     attctagtcc tactgaaaaa agaggtggta ttcgtgttga tttaattcaa gatgaaataa      2400
     cagattcaat aaaagaacat attaaagcat tcaaatgcag aaaaagtcat catacacgta      2460
     aggatactgg ccgaagctat ttaccaccta catattctat taagtatatg tgggaaaatt      2520
     ggtatgagaa aagaaaatta gaaaaaaaac aaactgcttc tttgagcaaa tatcagaaaa      2580
     tatttactac aaagtttaac ataagttttg gacatccacg ccaagacacc tgcagttatt      2640
     gtatggaaca aaaaattaaa attcaaactg aaggagatat tgacaaaaaa agtgagttaa      2700
     tgttagaatt aaccttacat aagagaaaag ctaagcgttt ttttgaacta ttaaaaacag      2760
     aaactcctgg ggaaatatct tgctcatttg atatgatgca aacccaacct ttaccaaagt      2820
     tgtctgtgac tgatgtattt tacagtcgcc aagtctggct ttataatttg acatttgtta      2880
     tatctgattc aaatcaaaaa ccagaaaact gcattttgta ctcatggaat gaaactgaaa      2940
     gtggacgtgg cccaaatgaa gtttgttcag cactgataca ttttttggaa tcattggaaa      3000
     aacgattaaa aacaagtgaa tcaccaccta ctatattaaa tttattttca gattcttgct      3060
     caggccaaaa taaaaaccag tttacaatga ttacattgtt gtattacata aattacaaag      3120
     caactgtatt tactcaaatc aatcatatat ttcctgtaag gggacacagt tatatgccac      3180
     ccgaccgagt ctttggtcga atagaacagg ttttaagaaa aaaggaaact attctgtcac      3240
     caaatcagta ttttgaaatt tttaagaact tttgcactgt taatgcatat ggtaaagatt      3300
     ttaaaatata tgacattaaa agtgcagtca aaacagttgt taagactaaa atagatttta      3360
     aatctactga gcaaaaggtg tattcttatg taaaaggcaa aaattcaagt attagggttt      3420
     ccaaaaccta tgctggagct tatgaagaat ttgaagttat taaaagacat tctgatataa      3480
     gtaaattatt taataatata aaaatcttac caaaaacaaa ttatgtcaaa ctcccaaagc      3540
     aaaatgatgt caaaaaactt ttaaaatttt tcacaatacc agaggatgct caagaatttt      3600
     atgaagacat ttttaataat aatgatgatc cttcagatga agatattcat tattatgaag      3660
     aggataatga ataaattcaa aataatgtgt cgattctccc atactatgtt attttattca      3720
     aattcatttg gtgttattat taaagagaat atactatgct taataataag ttgtttttat      3780
     tttattaatt tattatttgt ttttatttgt ataatgtact atgaattttt ttttaatatg      3840
     tataaaataa gttaaattta ttgttatttg ttttaatttc atatatttaa taacaaattt      3900
     aattttacct atagtaaaac catatactat gttattttat tcaaactcat tagatgttat      3960
     tatttaaggg aaaatactat gcttaataat aagttgtttt tattttatta aattattatt      4020
     tgtttttcta atatacctat ataaaataag ctttttttga ttatattttg tgataaaata      4080
     atactagaaa aagactagtt tttaagaaac ataaagatct ataagtagag caaagactgc      4140
     aaactaaaaa attattatga ataaaaatgt tattttgttt taaaaaaagg tgttattgtt      4200
     aataaaaaag taaataaact atgttaaaat taaagtatct aatacctatg tgttattttt      4260
     atttttattt gtatgattat ggactttgtt tttaatgatt ataaaataag gttttattat      4320
     ttataaatat aatacaaaac attgtagcaa tttaccagta aaaaaaaaag tatggagtat      4380
     atttggtttt ttcatgaaat agttgattat gaaaaataaa attctaggtc gttttgttaa      4440
     aaaaaatagc taataaaaaa tatatctaac tacctttaat ctttaaatta tatcaaaatg      4500
     tactatttaa tggaaatagt acgttatgat gaaatatggc caaaacgtac tatttccatt      4560
     gaattttgac aaaacgaact aagtggtgga aatagtacat tttggcacga ttcactttat      4620
     gaaattacgt ttaaatttac caaaacttaa atttaaatat aaaaaaatat cataagtaag      4680
     ttcagttttt ttttatgatt tttttgaata cttaaggttt ttactatgat tttttgataa      4740
     gctactatag aaaatcaatg tttctggaaa aaacaaaaaa tggaaatagt acgttttgca      4800
     ttgtcgcccc tc                                                          4812
//
ID   Sola1-2_BM  repbase;    DNA;    INV; 3302 BP.
XX
AC   .
XX
DT   07-JUN-2010 (Rel. 15.07, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   DNA transposon - consensus sequence.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-2_BM.
XX
NM   Sola1-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3302
RA   Jurka J.;
RT   "DNA transposons from Bombyx mori.";
RL   Repbase Reports 10(7), 946-946 (2010).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           949..2151
FT                 /product="Sola1-2_BM_1p"
FT                 /translation="LTHYFKEDGRGKCIPPNKTSNAIKESVKSFIKRLPAI
FT                 PSHYCRKDSTKLYLPVEFKNIKNLYRCYKEDLISKGVDVVSEKVFRQIFTT
FT                 DFNIGFHVSKKDKCIKCLRFEGQKPEDCAEFQDHLEEKKASKKRLECHRQL
FT                 GKENPSILCTSFDLQKVLNTPHGNNMLLFYSRKYAVYNLCFYESITRNGFC
FT                 FIWGESEAKRGANEIATIIQKYIENVDSRGIITSLILYSDSCPGQNKNKIV
FT                 LATIHNALLQSNNLQAIQMNYLLPGHTEMSVDSIHSTIEQSVRNITVWAPS
FT                 QWATISQLARKEPAPYNVENLTHEDFLNFDDMSEKYFKGNLVGKISKIRTA
FT                 TFKKSHPNQMKVKFSMKDNASEEIIQIIAKPRAINRRYNSSLPITKAKYKQ
FT                 PGPKEIV"
XX
SQ   Sequence 3302 BP; 1114 A; 522 C; 540 G; 1125 T; 1 other;
     cgaggggtga aaggctattt ggtttaagcg acatctaggg tgatattgag ttatatacat        60
     atacggaatc agcgaatttt tctccgtcga atgatgccgg atttattaaa atcagagcac       120
     ttttttggcg tttgaaacaa tactattttt gggttgtttc caaagtggca gtgtattatc       180
     caacgttgat tttgaatttt tttttagtaa tgtacttaaa ccatacaatg atattaagag       240
     acgagacata aaccagttac cttttctcag aaaaataatc caataagagt taaagcgtgt       300
     ttcctgtttc aattttttat taagcagtaa cttaaatcat tttgacttct accaattaca       360
     tggtgtgatg tctcttaaac catttgtccg tcacccaaat acgacatgga gtgtcgctta       420
     agctctttca gctgcatcta ttttccatgc agggtgctac ttaaatcaag tagttctttt       480
     gtttcagata ttttgcttag ccgttaaaac attttggtcc tattatttta ttaaatgcat       540
     gtcgcttaat acagacaata aaatgaagta atgcaatatg aaacattttt tcggtataaa       600
     taaaaatacg ggtcggtctt tcaatcatta aattttaata tgatacattt cattcgtgtc       660
     gcatgatacc atatttatta catctcccgg gagttaaaaa tcgtgatctt tcaaccggac       720
     tgccgcgcgc aggcgcttca gtcgaactcc agagcgcatc gaggagtgac gtgacgcgca       780
     gtcgccgcca gtgtttacgt aaaacgtctg tctttgaaat cgaatcgtaa gtactttaat       840
     ttcattattt acgtaaaatt ttcaattgag atgaaatgta ataaagttat ttgtttttat       900
     tatttttatt agtctttgat tatgttactt cttctattaa gtaggtagtt aactcattat       960
     tttaaagaag atggaagagg aaaatgcatt ccccccaaca aaacatctaa cgcaatcaaa      1020
     gaatcagtaa aatcttttat caaaaggtta cctgcaatac catcgcacta ctgccgaaag      1080
     gatagcacaa aactatatct gcctgttgaa tttaaaaata taaaaaattt ataccgctgt      1140
     tataaagaag acctcattag taaaggagtc gatgttgtaa gtgaaaaagt attccgtcaa      1200
     atattcacta ctgattttaa cattgggttt catgtgtcta agaaggataa atgcataaaa      1260
     tgcctacgtt ttgaaggaca gaagccagag gattgtgccg aatttcaaga tcatttagag      1320
     gaaaagaagg catcaaagaa gcggttagaa tgtcatcgac agttaggtaa agaaaatcct      1380
     tccattctgt gcacatcttt tgacctccag aaagttctca atacgcctca tggcaataac      1440
     atgttactat tttattctag aaagtatgct gtttataatt tatgttttta tgaaagcatc      1500
     acaaggaatg gtttttgttt tatctgggga gaatctgaag caaagagggg cgcaaatgaa      1560
     attgctacta ttatacagaa atacatagag aatgtggatt ctcgaggtat cattacatct      1620
     ttgatcttgt attcagattc ttgccctgga caaaacaaaa ataaaatagt ccttgcaaca      1680
     atacataatg ctttgttgca atcgaacaat ttacaagcaa ttcaaatgaa ttaccttctc      1740
     cctggccaca cggaaatgtc ggtagacagc atacactcta caatcgaaca atccgtaaga      1800
     aatattactg tatgggcccc ttcgcaatgg gctacaataa gccagctagc aagaaaagaa      1860
     ccagcacctt ataatgttga aaatctgaca cacgaggatt tcttaaattt tgatgatatg      1920
     tcagaaaaat attttaaggg taaccttgta ggtaaaatta gtaaaatccg tacagcaaca      1980
     tttaaaaaat ctcatccaaa tcaaatgaaa gtaaaatttt caatgaaaga taatgcatcc      2040
     gaagagatta tacaaattat tgcgaaacct agagctatca atcgtagata taattcaagt      2100
     ttgccgatta ccaaagccaa atacaaacag cctggaccta aagaaattgt gtgacactgg      2160
     ggttataccc ggagttcaga acaatatcgg ttgtgattaa ttatactctt agtaagtttt      2220
     atgacagccg atctcaagta atactgaata aataatacct aattatagtt gattttccta      2280
     cattcagact gaatttactt gattaatatc acatcagtaa aagtaataat actttataat      2340
     gtacaaaata ctaatacgta ttaatactta actgatgtga taatcaaatc agtctgaatg      2400
     taggaaaatc gtgtataatg aattaattat agtcgatttt cctacactct gattgatttt      2460
     acttgattat tatacgaaat atnaatactt tgactgatgt tgttaattaa tatgttgtat      2520
     attaatcaag taaaatcagt ctgatgtagg aaaatcaact ataattatgt attaataata      2580
     attgattatt atacgaaata ttaatagttt aactgatgtt gttgattaag actaaaaaat      2640
     aaataaatat aatcgatgtt cccgcattga gaccgatcta cttaattatt tttctaaata      2700
     aatactttaa ctgttgttgt gttttgtgca tttctttatt tattcaatat aagcacctga      2760
     gattttcagt gattgcgata tatttaggtt gttttaacag ccactgatag tattagacgt      2820
     aaaaaaatgt aacatcaaac ggtaaatttt caatattata tgtcacataa gtaaattcgc      2880
     ctgtcagtca ttttaatcta aattggtagt tgagataaat agcttgctac tattaatttt      2940
     gggctaagtc acttcatgct ttttggctta ctctgaaaat atattgcagc gtcgcttatt      3000
     ttttttccct gtagccaatt gtggttatga agtcacttaa atctttattc catactctga      3060
     aaaataaggg cttaaggcaa tttgtattaa gcgacgttta tctttgtaat taaaggtccg      3120
     ttttattcgg tattagcatc aacaacttga tgtttttaat tgaatttcaa ttaagtttac      3180
     tccattcaaa ttgctgaaga agtttttttg ttatgatttt ttttccaaaa ttttaaactt      3240
     taaatggctc tcctgtaaag ttgcaaaaat gtcgcttaaa ccaaatagcc tttcacccct      3300
     cg                                                                     3302
//
ID   Sola1-2_CiLe repbase;    DNA;    INV; 1197 BP.
XX
AC   .
XX
DT   15-NOV-2019 (Rel. 25.01, Created)
DT   15-NOV-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   DNA transposon from the bed bug genome - consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-2_CiLe.
XX
OS   Cimex lectularius
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Cimicidae; Cimex.
XX
RN   [1]
RP   1-1197
RA   Kojima K.K.;
RT   "DNA transposons from the bed bug genome.";
RL   Repbase Reports 20(1), 49-49 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs. 33-bp TIRs.
XX
SQ   Sequence 1197 BP; 381 A; 200 C; 203 G; 413 T; 0 other;
     tgaagagtgg aaattccaaa cgttctaagt gccaatttcc tcaaaactga gatttttttc        60
     ttaatatgtt ctatgtgcca tcgccaataa ccctaataat gttctaagtg ccaaacctct       120
     ttaaaagtgg tttgttgcgt tcgtcataga tggcactggt ctaagtatgg gacatatgat       180
     ttttccaaag gttctatgtg ccatggcgta tcagccagtt ggagaatcag aagttggatc       240
     ctgcatttta cgtctagtga attcatatga cattttcggc agaaagaaac tggttatgtg       300
     gtcagataat tgtgcaggcc aaaataaaaa ccgcaccctt atttttttaa tgacgttttt       360
     ggtacaactt ggacattttg aagagattgt tcagaaattt ctaataagcg gtcatagctt       420
     tttatcatgt gatcgagact tcgccattat tgaaaagagg aaaagggttt ccaaatgttt       480
     cactccgaca gatttacaaa atgttgtggc atcagctaaa gttacagggg aaccgttctc       540
     cgtagttaac atggaacatt cgtactttct agacttaaaa cacgcctgtg actctatatt       600
     aaaagtaaat tttccaatta caaaggctac tatgataaaa gtttccaaag atgatccagg       660
     ttttatccag tataagtcca cattcaatga cacagacttg tggaaacgtg ttaatgtact       720
     aaaaaagggg ctaaacctga tgatattaaa aaagtttgta tgtcattgat tcagaagcca       780
     ttcctgtcgg atggcaagaa aaaagatttc tctgccatgt tggatttttt gccagaaact       840
     gctaaaaact attatcaaaa cattctaaat aattaaaact ttaatttatc tttatacgtt       900
     aatttcatct attaaattat ttaggtttac catgttctat gtatcaatat agttttcatt       960
     caaagagttc tatgtaccac ggtacataga acgtttcttc aatttcttat ttttttgcat      1020
     attaaggagt ttgtttttgt ttttcattgc actagctgcg aaagaatata ctcctatatt      1080
     accaataaaa tacatttcaa taaagttttt gagttaccat ttgacttacg cagttttatt      1140
     gctttcctga aaaaaataac agaaggcact tagaacattt ggaatttcca ctcttca         1197
//
ID   Sola1-2_LMi repbase;    DNA;    INV; 1853 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1853
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3292-3292 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(207..767,820..1329)
FT                 /product="Sola1-2_LMi_1p"
FT                 /translation="MCNFRLVKLDNLHSTFHKLMRERSAETRSFCFDLQQV
FT                 QPLPKLSIGEAYYSRQISFYALCVTDVSNKNAKFFTWNETEGGRGANEVAS
FT                 GVLSYLEEAHFEDSVTTIRLFADGCGGQNKNMHVIHALVYWLQKKAPTHLK
FT                 NITAIFPVRGHSYLPADRLFGVVEKALRKCSDILTPEEYREVYKSAGKLMG
FT                 LNYGSSSLNLQTTYRTAQISMPRGDRTPTVVADYKILAKQFRKLDGIKEMK
FT                 RVMLKKCTINGKPLVRVKMEPTYRCDDPSKHFVTILKRGTNMEQVFEPPVL
FT                 DHLRALSDAKKLDVDTLLKAKFGDNWREIHSLQMYKLALDFDAAPECCDPE
FT                 DCNCLEEETGLSRL"
XX
SQ   Sequence 1853 BP; 586 A; 331 C; 374 G; 562 T; 0 other;
     gaggagcatc gtttcaaaac gtattaagtg cactcttgat caaaatacgt tttgatacga        60
     tttccccctg ttttttatgc gctctttaat gctgtgaatt cagattgaaa catttcgtgt       120
     tatatccctt aaaatttcca tgtcgaagta gatgcgtcgg atcaaatcgt attaagtgca       180
     cgggaacgat cggttcaaag tgtgttatgt gcaactttcg tctagttaag ttggacaacc       240
     tgcattcaac gttccacaaa ttaatgaggg agcgttctgc tgaaacaaga agcttctgct       300
     tcgatttgca acaggtgcag ccccttccaa aattatcaat tggcgaagca tactactctc       360
     gacaaatatc cttttatgcg ctatgtgtga ctgacgtcag caacaagaat gctaagttct       420
     ttacatggaa tgagactgaa ggtggtagag gggcaaacga ggtggcatct ggtgtacttt       480
     cgtatctaga ggaagcccat tttgaggatt cggtcaccac tattaggctt ttcgctgatg       540
     gctgcggagg ccaaaataaa aacatgcacg taattcatgc tctcgtttat tggctccaaa       600
     agaaagcacc aactcatctc aaaaacatta cagcaatatt tcccgttaga gggcattctt       660
     atttacccgc agatcgcttg tttggagttg tagagaaggc cctccggaaa tgttccgaca       720
     ttctcactcc tgaagaatat agagaagttt acaaatctgc gggaaagtaa gagctcttgg       780
     acatgactgg gctgtcagag actacaaaaa tgtttgtagc ttatgggact taactacggg       840
     tcatcgtccc taaacttaca aactacttac aggacggcac aaatatccat gccgaggggg       900
     gatcgaaccc cgaccgtagt ggcagactac aaaatactcg caaaacaatt cagaaaattg       960
     gatggaataa aggaaatgaa gagggtaatg ttgaagaaat gtactataaa tgggaagccc      1020
     ctcgtcagag taaagatgga gccaacatat agatgtgatg atccatcaaa acattttgta      1080
     acaatactga aacgaggaac aaacatggag caagtgtttg aacctcctgt gcttgatcat      1140
     ttgagagctt taagcgatgc aaagaaatta gacgtagaca cacttttgaa ggcaaaattt      1200
     ggcgataact ggagagaaat tcatagtttg cagatgtata aattagctct agatttcgat      1260
     gcagcacctg agtgttgtga tcctgaagat tgtaattgtt tggaagaaga aacgggactt      1320
     tcaagattgt gatatgttga tgtcgtactg taaaattcag gttttgattc tatatgcatt      1380
     tatacagcat aatttgtaat ctcaaagtat gtaaatttag tatgacctaa tatcttaacc      1440
     tgtgaaaaat ttactgaatg ttaataatac attttttttt actttctctg aactttgtgt      1500
     attgttgtga caattttaaa acattaaata aacataaact acagcaaaac tgatttgaaa      1560
     agctataagt gtttgatctc ctctgtgtat gtttattcac taaacggttc agaacgtatt      1620
     atgttcagta tatcggttca aaacgtatta agtgacaatt ttaaatttaa atataaggcc      1680
     acttaatgaa aaaccaattt cagtttttgt ggattctcaa acgttaccct agtatataaa      1740
     ctctgacatc tcaattttgt ggataccttt cccagttcgg aagtaaaacg tttttcttca      1800
     tttctgaaaa atgtacattg gtgcacctaa tacgttttga aacgacgctc ctc             1853
//
ID   Sola1-3_AA  repbase;    DNA;    INV; 3189 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola1 DNA transposons from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-3_AA.
XX
NM   Sola1-3_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3189
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(400..1197,1201..1794,2042..2854)
FT                 /product="Sola1-3_AA_1p"
FT                 /translation="MSLEYIKLYGGGSESEGSSDEDFAGFDLSAPASRYEK
FT                 FGESIRNAWMLDLNQLGNRARFGQRDDGNPVGAHPNVKFSMVSSKPPRFSA
FT                 SDVESNGNGRDPAVAQQANNSSPLEDEPTVAVSPDDNNSHSDSIDSEGSYF
FT                 AEEHRGKRKRTKKEQRKAVVAKKRRVCHPPKLELCGCRGRCTDSLSKDDRI
FT                 SIHRAFWKLNFAEQGEFFRERVVRVSVKKRSTERHYLKEPRKLHSYVYSLE
FT                 MADKRVVKVCRKFFLNTLGYGEHCGLLIGSAKKLLHSYFEHSILFIDRNMV
FT                 YRCLRTDNDGISGKPKMRGKYKRSRERKDAVKAHILLYNPTISHYRREHAP
FT                 NRLYLPSDITEKSMYENYLKQRPNLNVSYTFFCRVVKEMNISLVKLGHEEC
FT                 ETCVTAKQHEDQLGHGDENARHGCSVCERHQQHIHRATAAREQYRKDGETI
FT                 PPNEIVLAVDLQKVRVYLRLQVIQLPRLDGFKTIVFSQRLVAFNETFAPIG
FT                 EFAKSNAVIACLWNEAVAGRSAHDILSCFYRVISHLASRRKITFWLDNCAA
FT                 QNKNWGLFLFLILLVNSPAIQVNEIVLKFFESGHTFMAADSFHAAVEKAMR
FT                 QNPTITYPDFVDVVSKAKKRVDVFDMQVSDFFQTPFNVSQYTLNKCTKRPY
FT                 IDKIKKIIVQKGCFELKYSESVELFSKSQMKQINAEGFNLGNSLKMQRNPV
FT                 GIDAVRKDSLVSAILPLVAEEKKAFWENLPIKTE*"
XX
SQ   Sequence 3189 BP; 982 A; 613 C; 680 G; 914 T; 0 other;
     actgcccata ctcgcaatac agtcccattc gaaaaatcat catgttgaga aaaacgcatc        60
     tttacaattt cacaaaaaaa tacgttttgc tgctactggt tataataaat ataggtagca       120
     ttgttcagca tattataatt acaatatgaa agagtcgctg gcagttaaga tacatttgaa       180
     ttcgttgtat tttcatattt aaattagaat actggtaaat gggactcctt atccgagtat       240
     ttctcacgcc aaatgcattt atacccgcat accagtccca ttagttggga ctcgcttact       300
     ttgttatcgc gaacattgac acattgtccc aagtttacaa tcgattccta tcgattccaa       360
     gacacttttg catttccaac cgttgtttga aatgtaataa tgtccctcga atacattaaa       420
     ttgtatggtg gtggcagtga gagtgaaggt agcagtgatg aagattttgc tggattcgat       480
     ttgtccgcac cggccagccg atacgaaaag tttggtgaat ccatccgtaa cgcgtggatg       540
     ttggatttaa accagttagg aaaccgtgcc aggtttggtc agcgtgatga cggcaatcct       600
     gttggcgccc acccaaatgt gaaattttct atggtgagtt caaaacctcc tcgtttctcc       660
     gcatcagatg tcgagtccaa tggaaatggg cgcgatcctg cggtagccca acaagcgaat       720
     aactcatcgc cattagaaga tgaacctacc gtggctgttt ctccggatga caataacagc       780
     catagcgata gtatcgactc agagggaagc tattttgctg aggagcacag aggaaaacgg       840
     aaaagaacca aaaaagaaca gcgtaaggca gtcgttgcaa agaaacgccg agtttgccat       900
     ccgccgaaac tcgaactatg tggttgcagg ggacgatgta cggacagctt atctaaggac       960
     gatcgcatca gtattcatcg agcattctgg aaactgaatt ttgcagaaca gggagagttt      1020
     ttccgcgaga gggttgttcg agtttccgtt aaaaagcgaa gtacggaacg ccactatctc      1080
     aaggaacccc gaaaactgca ctcatatgtc tattcattag aaatggctga taaacgagtc      1140
     gtgaaagtgt gccggaagtt ttttctgaac acacttggtt atggagaaca ttgcgggtaa      1200
     ttattaatag gttctgccaa aaagcttttg catagttatt ttgaacattc gattttattt      1260
     attgacagaa atatggttta tcggtgtctt cgtactgaca acgatggtat atccggtaaa      1320
     ccaaaaatgc gcggcaaata taagcggagc cgtgagcgta aagatgctgt gaaagcgcac      1380
     atcttgctct acaacccgac aatatctcac tatcgccgcg agcatgctcc gaacaggctg      1440
     tacttgcctt cggacattac agagaaaagc atgtacgaga actacctgaa acagcgaccc      1500
     aatttgaacg tcagctatac attcttctgt cgagttgtga aggaaatgaa catttccttg      1560
     gtaaaactgg gccatgaaga atgcgaaacg tgcgttactg ctaagcaaca tgaagatcaa      1620
     ctgggacatg gcgatgaaaa cgcgcgccac ggatgttctg tttgcgagag acatcaacag      1680
     catattcatc gtgcaacagc agcacgtgag caataccgca aggacggcga gaccatacca      1740
     ccaaacgaaa tagtgcttgc tgtggatcta caaaaggtaa gggtgtactt acggtaacac      1800
     acctaaacat ggcacaatgg ccggcttgtg cctctcttca aaggcactaa tctgctgaaa      1860
     tgatgaacgt aaaaagttta tcttcttatt ttaagcttgc acaaagctaa attagaaatt      1920
     gcattgaagt ttgatgcttt tttcgcgaga tttgtgcctt tgaagttttg gtacattatt      1980
     gaaatttggt tccaagttgt ttcactttaa attaactgta ttaattaagt gaggctatta      2040
     attacaggtc atccagctgc ctcgtctaga tggttttaaa acaatcgtgt tctcgcaacg      2100
     tcttgtggcg tttaacgaaa catttgcgcc aatcggagaa tttgccaaat ccaatgcggt      2160
     gatcgcctgt ctgtggaatg aagcagttgc gggtagatca gcacacgaca ttctcagttg      2220
     tttttatcgt gttatttcgc accttgccag ccgacgcaaa ataacattct ggctcgataa      2280
     ctgtgccgct cagaacaaaa attggggact atttctcttt ctgattttgt tggtgaattc      2340
     gccagcaatt caagtgaatg aaatagttct caaatttttt gagtctgggc atacgtttat      2400
     ggctgcagat tctttccacg ctgctgtaga aaaagcaatg cgccaaaatc cgacgattac      2460
     ataccctgat ttcgttgatg ttgtatcaaa agcaaaaaag agggtcgatg tatttgatat      2520
     gcaagtgtct gatttcttcc aaacgccatt taacgtcagt cagtacacac tcaataaatg      2580
     tacaaagcga ccatatattg acaagattaa gaagattatt gtgcaaaaag gatgtttcga      2640
     gttaaaatac agcgagtctg ttgagttgtt ttctaaatcc caaatgaaac agatcaacgc      2700
     tgaaggattc aatttgggaa attcgttaaa aatgcaaaga aaccccgtgg gtattgacgc      2760
     tgttcgcaag gattcacttg tcagtgcgat tctaccattg gttgcagaag agaaaaaagc      2820
     attctgggaa aatttgccta tcaagacaga ataaacttct ttgtataaga atatttttaa      2880
     atatagatga actgtaccac cttagcttgt ataatttaat attttataaa ataaaaacca      2940
     taatgctaga tttcaacaat aattgaagga atatattggt tcattttctt cgttatcaac      3000
     taatgggact gttatgcggg tactttcaat atgggacgca catggtttgg tatttttttc      3060
     gcattttgcc catacaaaag taaaatttta aaaatgattt cgaaaagtat acttaaaata      3120
     aacactattc atgaagttat ctcaaaagtg gtgaaaattc aaatgggact gttatgcgag      3180
     tatgggcag                                                              3189
//
ID   Sola1-3_AP  repbase;    DNA;    INV; 3762 BP.
XX
AC   ABLF01009116;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-3_AP.
XX
NM   Sola1-3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3762
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(769..927,885..1094,1107..3122)
FT                 /product="Sola1-3_AP_1p"
FT                 /translation="MFEIIVWSSERNEITSIKENDNIVKGSSNEGITLKLL
FT                 FKSIYFVKNVIIIQFFINIFCQKCNNYTIFLGVANPFLEPHIEFMQNDNME
FT                 SSNYEQGDVGNTLDSEISTNENYNILSRNSDPGKITANNTILQYCVKIIII
FT                 LIENAECSIHSSESDSDTSSLSLSSISNEDDTDADPNFELPANNSIILYEE
FT                 NIVSNIIEKKIPRKVKNTSEIKKNVRKRKANQENWRKNVVKKLRNSGKSYV
FT                 SSSKSNKFVEAKKVLPPCGEKCKLKCFTKFTEDNRQKIFEDYWKLGDIDKQ
FT                 RYFLASSMTIVKPKYRYVRENSHRRENNSFHFEVNQIRIRVCKNFFKVTLC
FT                 INDRPLRTVIEKQDSFTGKIIANDYRGKHKNHVKVPDTVKEDIRQHIRSIP
FT                 RIESHYCRANTSKDFIEGGKSIADLHRDYKSECEEKNILAANYVMYARIFN
FT                 EEFNISFFTPKKDQCELCISYENSNTVEKVQLQEKYDTHLKEKELSRLEKE
FT                 KDKQANCVTAVYDLQAVLPCPLGNASSFYYVSKLNVFNFTVYNLQTNDVQC
FT                 YVWHEGQAHRGANDIGSCILNYLKVLQQNAIETEASAKLDVIFYSDNCAGQ
FT                 QKNKFILAMYLYAVLNFSHINSITHKYLITGHTQNEGDNAHSVIERNIKKS
FT                 KKSGPIYVPEQYVSFIRSAKKSGNPYKVQEMCYKDFFDLKDLTTKLGINSF
FT                 SNAFKITETKMFKVTKDDPDTIYFKNSYEQTEFNSISIKNKKTRKTSNQLN
FT                 NNLELKRAYDVKPGITEAKKSGLLSLIRKNCVPNYYYDFYNNL*"
XX
SQ   Sequence 3762 BP; 1499 A; 449 C; 543 G; 1271 T; 0 other;
     cgctcatccg gaagaaaaac gacacaagtc aaaaattgac aattttgggt tttttacaca        60
     tagtaataaa acaagatgca cattttattg tgtaaaaacg acacttttgt aatttaaaaa       120
     ttgtccacct gagtgcacta gtgtcacttt tcctttgata agaaaatatc atatgtgtaa       180
     caagaatagt gtcactttat cagttactcc tagaccgtta tcgggtatgc gtgagttgaa       240
     atatataaaa acgtcatatt tcgaattatt tttttttata tagtggtaca gttcaagaaa       300
     aacgacacat ttagacttct gccactttac ttgatcaggt aagatgaaaa tcaaatacaa       360
     ctaaattaaa acacaaatta tatcaaaatg tgtcattctt cttttaaaaa atattactta       420
     tattctgtta caaatcaaaa taagtcacta tagtaattac attttaatta aactttattg       480
     aaaatacaat ggttgcagtg tttatttgaa gttgtgacgt tattgatgtt tattttattt       540
     aaataattgg caataattat tagtggttta acacacatta ttatttgtat tatttttatt       600
     tagctatgtc acagacaagt agatctcggt taattttgaa attgtcaaaa gaaaaaataa       660
     ctaaagatgg tcaaatcggt tgcaaagaag gtaatcataa tttataatgt acctatataa       720
     atattattat ccattagtat tgatcgtttt aagaaaagta attttgaaat gtttgaaatt       780
     atagtttggt catcagaaag aaacgaaata actagcataa aagaaaatga taatattgtt       840
     aaaggcagta gtaacgaagg tataacttta aaattattat ttaaatcaat atattttgtc       900
     aaaaatgtaa taattataca atttttttag gagttgcaaa tccttttttg gaacctcaca       960
     tagaatttat gcaaaatgac aatatggaat ctagtaatta tgaacaagga gatgtaggta      1020
     atacgttaga ctctgaaata tctactaatg aaaactacaa tatcctatct agaaattctg      1080
     atccaggtaa gatataaaat aactaaactg ctaataatac aatattacaa tattgtgtta      1140
     aaataataat aattttaata gaaaatgcag agtgttccat ccattcaagt gaaagtgatt      1200
     ctgatacaag ttcattgtca ttgtcaagta tcagcaatga agacgatact gatgctgatc      1260
     caaattttga attaccagcc aacaatagta taatattata tgaagagaat attgtaagta      1320
     atattattga aaaaaaaatt ccaagaaagg taaaaaatac aagtgaaata aagaaaaatg      1380
     tgagaaaaag aaaagctaat caagaaaact ggagaaagaa tgtggttaaa aaattgagga      1440
     attctggtaa gagttatgtt tcatcttcaa aaagtaataa atttgttgag gcaaaaaaag      1500
     tattaccccc atgtggtgaa aaatgtaaat tgaaatgctt cactaaattt acagaagata      1560
     acagacaaaa aatatttgaa gattactgga aacttggaga tatagataaa caacgttatt      1620
     ttcttgcatc cagcatgaca attgtaaaac caaaatatag gtatgttaga gaaaatagtc      1680
     atcgtcgtga aaacaactct tttcattttg aagtaaacca aattagaatc cgtgtatgta      1740
     aaaacttttt taaggtgaca ttatgcataa atgatagacc attacggact gtaattgaga      1800
     aacaagattc attcactgga aaaattattg ctaatgatta tagaggcaaa cataaaaatc      1860
     atgtaaaggt acctgataca gtaaaagaag acattcgcca gcacatacga tccatcccaa      1920
     ggattgaaag tcattactgc cgtgccaaca catcaaagga ttttatcgaa ggagggaaat      1980
     ctatagccga tttgcataga gattataaat cagaatgtga agaaaaaaat attttagctg      2040
     ccaactatgt tatgtatgcc cgtatattca acgaagagtt taatatatca ttctttactc      2100
     caaaaaaaga tcaatgtgag ctttgtattt catatgaaaa ttctaatact gtagaaaaag      2160
     tacaacttca agaaaaatat gatactcatt taaaagaaaa ggaattgtct cggttagaaa      2220
     aagaaaaaga taaacaagca aattgtgtga cagcagtcta tgatcttcaa gcagttttac      2280
     catgcccatt ggggaatgca tcttcgtttt attatgtttc aaaactcaat gtttttaact      2340
     ttacggtgta caatttacaa acaaatgacg tccaatgtta tgtatggcat gaaggtcaag      2400
     cacatagagg tgctaatgat attgggtctt gtatattaaa ttatcttaag gtattacagc      2460
     aaaatgcaat tgaaactgaa gcaagtgcta aattagatgt gatattttat agtgataact      2520
     gcgctggaca acagaaaaat aaatttattt tagctatgta cttgtatgca gttctaaatt      2580
     tttcacatat aaatagtatc acacacaagt atttaattac tggtcacaca caaaatgagg      2640
     gcgacaatgc acactctgtt atagaaagaa atattaaaaa atcaaagaaa tctggtccta      2700
     tttatgttcc tgaacaatat gtaagtttta ttagatctgc taaaaaaagt ggcaatccgt      2760
     ataaagttca ggaaatgtgc tataaagatt tttttgattt aaaagatctt acaactaaat      2820
     tagggatcaa cagtttttca aatgcattca aaataacaga aacaaaaatg tttaaagtga      2880
     caaaagatga tccagatact atttatttta aaaactctta tgaacagact gaattcaatt      2940
     ctataagtat aaaaaataaa aaaactagga aaaccagtaa ccaattaaat aataatttag      3000
     aattaaaaag agcttatgat gtgaaacctg gtataactga agcaaaaaaa agtgggttgt      3060
     tatctttaat tagaaaaaat tgtgttccta attattatta tgacttttat aataatttat      3120
     aagtctgaat tctacctatt agttattttt atatttaatt acattctata aaaagatttg      3180
     ttatgttcat tttttaataa tttaaaacat ttttaatgtc ttagtttttg ataataatat      3240
     acttacttaa taagaaaaat attatgttac tattttttta aattcaaaag actgcttatg      3300
     tttgagtttt tgttatactt gcctacttaa taagaaaaat attatgtttc tcatttttta      3360
     aaaatttaaa aactgtttat gttattttat tgttatactc aattatgaaa gtattatgtt      3420
     actaattttt aataatttta agaaaactga taatgtgcta gcttctgtta tgcctagtaa      3480
     gaaaaaaatg atgttactca ttgatataat aatgaaataa attgtcaata tcaaaaaagt      3540
     aatttgttat ttatttattt ttttaacatg gtaataatta aaattatatt atgtaacttt      3600
     aaattattaa gtacaatatg caaaatcaca taaggtctga tttatttgca ttgttaatga      3660
     ataaatatca aaatgactta caaacaaaat aaaaaaatgt ttaatccact ctcctgaaaa      3720
     atagcacttt ttgatttgtg tcgtttttct tccggatgag cg                         3762
//
ID   Sola1-3_LMi repbase;    DNA;    INV; 2957 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2957
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3293-3293 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           705..2606
FT                 /product="Sola1-3_LMi_1p"
FT                 /translation="MDIFITEMFASNEEAPGEARASTSAATSFAADVPETN
FT                 DDAVIRSRGKKRLRNEDKWLRNVRKERRALGQEYVNRKGNLVPRKELRTIS
FT                 ECSCRYECHKHINEERQEQIFNEFYGLGSHDLQSAFLFTMIKVVDKARSYV
FT                 GQEHSRREKTRLYYLLNSNGSETRVCKRFFQNTLAVSAGRIDRVLKNKGEN
FT                 ATPPRDGRGKGEPGNKTPPHKVDVVKRFIEKFPAYESHYAYHKNDGRKYLG
FT                 PDLNLSIMYSLYCAEEQMPVSHFIFRKIFYENFNLSFHPPVSDSCRTCDAL
FT                 QVKITAADNDKERTELIAEREFHHQKAEYARAGLQSDTLLSKSDGNVTVIT
FT                 FDLMKTLPTPVISTGVSYYKRQLWTYCFGIHNMHNDDTYMFLWNESIASRG
FT                 PQEIGSCLLYFIRNFVRTEKLIMYSDQCGGQNRNIKVAVLCQYIVSSSEFS
FT                 VKEIDHKFLVSGHTYLPCDQDFGLVQKRKKYFPNIYLPEHWNDVVVSAKKR
FT                 NPFTVINMNAECFFSTKQLERNITNRKMSSGSCKVRWLDIQWLRFEATKRF
FT                 KIWYKYSNQSQEPFQEIDVARRTSTCISNLEQLYPNGHAITETKKKDLLSL
FT                 LPYVPPLHHDFYKNLKTSSNAVDTLPVDDFEMQNSD"
XX
SQ   Sequence 2957 BP; 905 A; 558 C; 656 G; 838 T; 0 other;
     gaggcactga gagcacaagc ggactaaccc acactttttg tgaatttgag ttattgacat        60
     gttgtgataa cagtttacga gtactatgcg atgcccgttg atctgttcgt ttatctgaag       120
     gtgtttccga ttgagcaacg taaacactgt tgttgcactc aaccgccgat agataccggt       180
     gagagcagca gtggactatg caccatagcc cacttgtgct ctgcgctttc cgtccactgt       240
     cactgcgcgt ggtgctggcg aacgaaagac ttgtgtgtgc agcgtggaac aacgtattgg       300
     accagtgacc acgtggacgt gtatgtcgat tgttcagcat ggaaactcct gcgaaaagcg       360
     tggaggagca actgcaaggt tagttattgt tgtattcctt tcctttgctt gcggataaca       420
     ttgtcaaacg tacgctaacg tgttcatatt caaagacgtc cttaggtagc tcgaacggtg       480
     actttgttca caaattgcaa gttgttgtcc atacgaagaa acaattaaat atgaacagta       540
     ctttatttat tgctatattg tgtaatcggg taaaaatcac gtttgatgtt atgtgtacaa       600
     caatgtttta ccgtccgccg agtcgtgttg tgcaattgct tagcctgtct atactaatgc       660
     ccacattgac cattactgtc gtgtagttaa tattacgttg agggatggat atttttatta       720
     cagagatgtt tgcatccaat gaggaagcgc cgggagaagc gagagcgagc acgtctgcag       780
     caacaagttt tgcagcggac gtgccagaga caaacgacga tgccgtgata cggagccgag       840
     gaaagaagcg ccttagaaac gaagataagt ggcttcgtaa cgttaggaaa gaacggagag       900
     ctctaggtca agagtatgtc aaccgtaagg gtaaccttgt acctcgaaag gaattgcgga       960
     caatcagcga gtgttcgtgc cggtatgagt gtcacaaaca catcaacgaa gaacggcagg      1020
     aacagatatt caatgagttt tatggtttag gcagccatga tctgcagtcg gctttcctgt      1080
     tcacaatgat taaagttgtt gataaagcac ggtcttacgt aggtcaggaa cattcacgca      1140
     gggagaagac aagattgtat tacttgctca attcaaatgg gtctgaaact agggtgtgca      1200
     aaagattctt tcagaatact ttagctgtat ctgctggaag aattgatagg gtgctcaaga      1260
     ataaagggga aaacgcaacc cctcctcgtg atggtagagg taaaggtgaa cccggtaata      1320
     aaacacctcc ccacaaagtt gatgtagtaa aacgtttcat agaaaaattt ccggcttatg      1380
     aaagccatta tgcgtatcat aaaaatgacg gtagaaagta tttaggacca gatttaaatt      1440
     tatcaatcat gtactcactg tactgtgcag aggagcaaat gcccgtttct catttcattt      1500
     tccgcaaaat tttttacgaa aacttcaatt tgtcatttca tccaccagtg tccgactctt      1560
     gtcgaacatg tgatgctttg caggtaaaaa taacagctgc cgataatgat aaggagagaa      1620
     cagagttaat tgcagaacgt gaattccatc atcagaaagc tgagtatgca cgggcaggtt      1680
     tacagagtga tactttgctt agcaaatcgg atggtaatgt tacagtgata acatttgatt      1740
     tgatgaaaac tttgcctaca ccggtcatct caactggagt ttcctattac aaacgtcagt      1800
     tgtggacata ttgttttggc atccacaata tgcacaatga tgatacatac atgtttctat      1860
     ggaatgaatc cattgcgtcg agagggccac aagaaattgg ctcttgtttg ctgtatttca      1920
     tacgcaattt tgtcaggact gaaaaactaa ttatgtactc tgatcagtgt ggaggccaaa      1980
     atagaaacat aaaagttgct gtactgtgcc aatatattgt aagcagctca gagttctctg      2040
     tgaaggaaat agaccataaa tttttagtta gcggacacac atacctgccc tgtgatcagg      2100
     attttggctt ggttcagaaa cgaaaaaagt attttcctaa tatttacctt cctgaacact      2160
     ggaatgatgt ggtagtgagt gccaaaaaaa ggaatccgtt cacggtaatc aatatgaatg      2220
     cggagtgttt cttttcaaca aaacaactcg aaagaaacat cacgaatcga aaaatgtctt      2280
     ctggcagttg taaagtacga tggttggaca tacagtggct gcggtttgaa gcaaccaaga      2340
     gattcaaaat atggtataaa tactcgaacc aaagccagga gccatttcaa gaaattgatg      2400
     tagccagacg aacatccaca tgcatcagca atctcgaaca gctttatcct aatggacatg      2460
     caattacaga gacaaaaaag aaggatctgc tcagtttgct tccgtatgta cccccacttc      2520
     atcatgattt ctacaaaaat ttaaaaacgt cttcaaatgc tgtagacaca ttgcctgtgg      2580
     atgattttga aatgcaaaat agtgattaaa tttatagaaa ccaatgtaaa atgttacatg      2640
     taatgtgtac aatatataat aataatggtt actgttgtca catgcatcag cgtactaacg      2700
     atctatcact gagaatgttc aacaactcgg ggcgaaaatg gactaagcca cataaaattg      2760
     ctaattttct actatgtaat tgacttttgt aatgtatcta tgtaagaatg tttgttcaat      2820
     aaaaccagtt gcatcgtatg catgttacaa ggctgcattg tatcacggaa aaacattctt      2880
     tgggagccct tattattagg cctgtttcct ccatattgac ttccgcgggg ttagtccgct      2940
     tgtgctctca gtgcctc                                                     2957
//
ID   Sola1-4_AA  repbase;    DNA;    INV; 2917 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   18-JAN-2021 (Rel. 26.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-4_AA.
XX
NM   Sola1-4_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2917
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
CC   Helitron-N1_AAe insertion region is masked out.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(355..1146,1207..1722,1770..2396,2299..2598)
FT                 /product="Sola1-4_AA_1p"
FT                 /translation="SQSEKTDESSSSSEDEGFQGFCDHEQRVDESGFEAFK
FT                 AAVNGEIVPNVTPPGSWRSFSRAVLNETTGEALNSHTNHKASSNAKLPECG
FT                 GAKITRKEPSNVAERLCEYGVGSFENISTLKEPTEDIWNDPIDSDGSFFDA
FT                 EETSATMKRTKKAIQKEDSAKKRRMSHGIKLVDCKCKKRCPDKVGKDARTQ
FT                 NHTRFWSLDSLGQDSFFRETVQSVPLKRRVKDRFVLDGPKKRRSYVFNLMS
FT                 ENELIEVCRKFYLNTIGYNENCGKHGFRCVDGDDNYNRKVSQRGKHTRDMT
FT                 KRDAVKAHINSFNPTISHYRREHAPNRLYLPSDLTEKAMYEHYLNKKNVHV
FT                 SYQFYGRVLNQMNISIVKLGHEECKLCTTSTEHQKQSGHSTVQSSEGDDLC
FT                 TICDKFSVRLNFAAMSREAFRKDGDNVKPGCVVLAVDLQKVSVIQLPRLDG
FT                 YKSIVFSQRLLAYNETFAPVGSYMKNLPVITCLWDESIAGRHASNIASCFH
FT                 RVSHRFKDSEEIIFWLDNCSAQNKNWNLFQHIILLLNSNDIKIKKISFKFF
FT                 ETGHTFMAADSVHAAIEKKMRRSKAAETFPDFAGIVKNAKNHMEVMDMKFN
FT                 DFFNTTMNTTQNMINQCTPRPYIEKNQTHCFQEGKPRTFLQQRFRWKINAH
FT                 PGRILKKIKHIVFKKGSHELSYSNAFDGSELMNKCVLFSKKQLKQISSENF
FT                 NLENTLKRQAVPKGITKDRKEALLKVILPLVSNTSKSYWNDLPLQ"
XX
SQ   Sequence 2917 BP; 976 A; 539 C; 583 G; 819 T; 0 other;
     ctgccgtgaa tcgcaagtca gtcctatctg taaaaacaag gaaatgagaa aactgctggt        60
     aaagatttcg caagttttct catttatttt gtttaaccca cggataaatt caacaaaaat       120
     catgcagtat aatagaatat atatgtgctc atcagtacat attagacaaa attatgaaaa       180
     ctgttttttt cgactaaaaa agccaaagag actgacttgc gattactttt tgcatcaatg       240
     cgaaaagtaa tcgcaagtcc gtcacattgc catgacaata ttgcgtgtgt tattctccac       300
     aaattgttgc tatgaaaaat tgaccatctt cagagtacaa gttgatttat ataaagtcag       360
     tctgaaaaaa cggatgaaag ttccagctca tctgaagacg aaggcttcca aggtttttgt       420
     gatcacgaac agcgtgtgga tgaatctggt tttgaagcat tcaaagctgc agtgaatgga       480
     gaaatagtac ccaatgtaac tccccccgga agctggagat ccttttccag agccgttctg       540
     aatgaaacca cgggagaagc acttaattcc cacacaaatc ataaggctag ctcaaatgcg       600
     aaattgcccg agtgcggagg ggcaaagatc acccgaaaag agcccagtaa cgttgccgag       660
     cgtttatgtg aatacggcgt cggctctttc gagaatatat ccacgctcaa agaacccacg       720
     gaggacatct ggaatgatcc gattgattcg gacggaagct ttttcgatgc agaagaaact       780
     tctgcaacta tgaaacgaac gaagaaagcc attcaaaagg aagactccgc caagaaacgg       840
     cgcatgtcgc atggtattaa attagtcgat tgcaaatgca aaaaacgatg ccctgataaa       900
     gtaggtaaag atgctagaac acaaaatcat acccgctttt ggagtttgga cagccttggc       960
     caggattcat tttttcgaga aacggtgcag tccgtgccgc tgaaaagacg agttaaagat      1020
     cgttttgtac tggatggacc aaagaagcgg agaagctatg tattcaattt gatgtccgaa      1080
     aatgagctga ttgaagtttg ccggaagttc tatctaaata caatcggtta caatgagaac      1140
     tgcgggtaag atgtgctgct ctgtgatagt gtttaaaaat ctgctacaat gaacatttcc      1200
     ttttagaaac atggttttcg atgtgtcgat ggtgatgata attacaatcg aaaagtgtcc      1260
     cagagaggaa aacacactcg tgacatgacg aagagagatg ctgtaaaagc tcatatcaat      1320
     tccttcaacc caacgatttc acattaccga cgtgagcatg ctcccaatag gctctatttg      1380
     ccatccgacc taacggaaaa agcgatgtat gagcattatc tcaataaaaa aaacgttcat      1440
     gtcagctacc aattctacgg ccgtgttttg aaccagatga atatatccat cgttaaatta      1500
     ggccatgaag aatgcaagct gtgcaccact tcaaccgaac atcaaaaaca gtcgggacat      1560
     tcaactgttc aatcctcgga aggagatgat ctttgtacga tctgtgacaa attttctgtc      1620
     cgcttgaatt tcgcagccat gtctcgagaa gcttttcgaa aggatggaga taatgtaaaa      1680
     cctggatgcg ttgttctggc tgtcgacttg caaaaggtaa gttaaaccac ttttttaaaa      1740
     taacgtgttt tgacccctgt atattttagg tgattcaact cccaagactt gatggataca      1800
     aaagtattgt tttttctcag cgtttactgg cgtataatga aacttttgct ccggtgggta      1860
     gctacatgaa aaatctacct gttataacat gtctgtggga cgaatctatt gctggacgcc      1920
     atgccagtaa catcgcaagc tgtttccatc gtgtcagcca tcggttcaaa gattcagaag      1980
     aaatcatatt ttggctagat aattgcagtg ctcagaataa aaattggaat ttattccaac      2040
     atattatact gctgctcaac tccaatgata ttaaaattaa aaaaatatca ttcaagttct      2100
     tcgaaactgg acacactttt atggcagccg acagtgttca tgctgcaatt gagaaaaaaa      2160
     tgcgtagaag taaagcagca gaaactttcc cggattttgc aggaatagtt aaaaatgcga      2220
     agaatcacat ggaagtaatg gatatgaagt tcaacgattt tttcaacact accatgaata      2280
     caactcaaaa catgataaat caatgcacac cccggccgta tattgaaaaa aatcaaacac      2340
     attgttttca agaagggaag ccacgaactt tcttacagca acgctttcga tggaagtgaa      2400
     ttaatgaata aatgtgttct attctcaaag aagcagttaa agcagatcag tagcgaaaat      2460
     ttcaacctgg aaaatacact gaaaaggcag gctgttccga aaggcatcac gaaagatcgg      2520
     aaggaagctt tactcaaagt tatcttgcca cttgtcagta ataccagtaa atcctactgg      2580
     aatgatttgc cactacaata atcgtttata gaaatgcttc gaaaatactt caaaatatat      2640
     gaaatcattt tagttataga ataaatccgt ttaaaaatat aatacatttg tttttgtatt      2700
     tttttctatg taattattat ataattcatt attgggactg acttgcgatt acttttgatt      2760
     atgggacaat ttgacttggt gttgtctttt attttttcag aacaaaattt tttttttgat      2820
     tgctgcagct aataatatat agaaaaataa ggcgaaaagt ggttgtaact caaaaatgac      2880
     aaaaatgcag atgggactga cttgcgattc acggcag                               2917
//
ID   Sola1-4_AP  repbase;    DNA;    INV; 3041 BP.
XX
AC   ABLF01009849.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-4_AP.
XX
NM   Sola1-4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3041
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(846..1922,1926..2420)
FT                 /product="Sola1-4_AP_1p"
FT                 /translation="THHIDKATRENIFKKFWSLGDLQQQRNFIHSCMENIN
FT                 PLYRYPKSTGSNKRKLNQAFYFSVNNINIRVCKIFFKNTLFINDRMIRTVL
FT                 SKLKDGFVEKDKRGKHLNHKKLDSDIKDGVRAHINSIPRIESHYLRSQTTR
FT                 EFIDGGKSLADIHRDYVNLCKENNLCFAKIDIYSRIFNREFNISFFIPKKD
FT                 QYSHCEAYKNADEVQKVMLDENYQLHLHEKELSRTEKEKDKIFASNTSNKT
FT                 TVLCYDLQAVLPTPRGEVSVFYYKSKLSIFNFTISNIVKSSTYCYVWHEGE
FT                 AHRGVNVIGSCVLRYLSTECDDQNVIFYSDNCAGQNKNKFMISLYLYAIAK
FT                 LNIISITHKFLVVGHTNEGDSAHSVIEKQIKKSLKSGPIYIASQYVTLIQI
FT                 AKKTDTPFTVEQLSSDDIYDIKDISKNIGDNYTLNTNGEKVYWNNIRIVKV
FT                 EKCHPGIIFYKNTYENDEFMKINVNMKKKGRRSSGIPYNIKLAYAEKPKIT
FT                 ENKKRDLLSLCDSNHIPKVYHSFYKNL*"
XX
SQ   Sequence 3041 BP; 1180 A; 371 C; 411 G; 1079 T; 0 other;
     cgcacctttg aaagacaact cgaaaaatac gtttttcgag atattaccat caaaatttgc        60
     agaatttcat cctttatatt ttggtgtggt tgaaattttt gactatatat aatattaaag       120
     accgtattgt cagctcaaat gtctttattt ctgcttaaaa taaaatatag tttccagctg       180
     gaatatcgac acttctcaga tgtaacttta ttctggcctg gcttatgttg ttacacaata       240
     tttttctagc aagaataatt tcatatctca aaagtaatag tttcacacga gaaagattat       300
     tttactttaa ttaatataat aatattacca gtggctatta taagaatatc tagtagtgtt       360
     atcagtatta taatcgtaat aataaccgac ttgtataata accgacttgt atcgtggtgt       420
     tattattatc gtagataaat atatggatgt aaatgttatt aaatgttatt tttgttatcg       480
     attctacatt ctactatcgt cttgcactct tccagtacga aatccgattt cgttagttta       540
     ttttattttt ttattgttta atagtttagt taactataat aattatcgtg taatactgtt       600
     ttacgtttta taagtaaaat ggatcttcta caatgatcaa gatcaaaacg tcttgttaaa       660
     ttagcaacaa aaaccaaaag tcaggtatgt acattattta aaatattgta atttatattg       720
     ttttcaaaaa attttaatag tatattataa aaatttcatt gaaactaatg tgtgcacaac       780
     ataatatttt gttttatgtg gcttatataa ttttattatg ttttattaat tgagtacatc       840
     cttaaacgca tcacatagat aaagccacaa gggaaaatat ttttaaaaag ttttggtcat       900
     taggtgattt acaacaacaa agaaatttta ttcacagttg tatggaaaac ataaatccat       960
     tatatagata tcctaagtct actggttcta acaaaagaaa gcttaatcag gcattttatt      1020
     tttcagtaaa taatattaat ataagagttt gtaaaatatt ttttaaaaat actttattca      1080
     taaatgaccg tatgataaga actgttctgt caaaattaaa agatggattt gttgaaaaag      1140
     acaagcgtgg aaaacattta aatcacaaaa aactagattc agatataaaa gatggtgttc      1200
     gtgcacacat aaattctata ccaaggatag agagccatta tttgcgatca caaactacaa      1260
     gagaatttat agatggtggg aaatctctag ctgatattca tagagattat gtaaatttat      1320
     gcaaggaaaa taatctttgt tttgcaaaaa ttgatattta ctctagaatt tttaatagag      1380
     aatttaatat ttcatttttc atacctaaaa aagaccaata ttcacattgt gaagcttata      1440
     aaaatgctga tgaagtgcaa aaggtcatgt tggatgaaaa ttatcagtta catttacacg      1500
     aaaaagaact tagtcgaaca gagaaagaaa aagataaaat atttgcatca aatacttcaa      1560
     ataaaacaac tgttttatgt tatgaccttc aagctgtatt accaactcca agaggagaag      1620
     tatcagtctt ttattataaa tctaaattgt caatatttaa ttttacaatt tccaatattg      1680
     taaagtcatc aacatattgt tatgtatggc atgaaggtga ggctcaccgt ggtgtaaatg      1740
     taataggctc ttgtgtatta agatatctgt caacagaatg tgatgatcaa aatgttatat      1800
     tttattctga taattgtgct ggccaaaaca aaaataaatt tatgataagc ttatatttat      1860
     atgccattgc aaaacttaat ataatttcaa taactcataa gttcttagtt gtagggcata      1920
     cataaaatga gggggatagt gcccattctg taattgaaaa acaaataaaa aaatcattaa      1980
     aatcaggtcc tatatatatt gcatctcagt atgtcacact tatccagatt gccaaaaaaa      2040
     ctgatacacc attcactgtt gaacaactaa gctcagacga tatttatgat attaaggata      2100
     tttctaaaaa tattggagat aactatacat taaacactaa tggagaaaag gtttattgga      2160
     acaatattcg aattgtaaaa gttgaaaaat gtcatcccgg tataatattt tataaaaaca      2220
     catatgaaaa tgatgaattt atgaaaatta atgtaaacat gaagaaaaaa ggaagaagat      2280
     catcaggtat accttacaac ataaagttgg catacgcaga gaaaccaaaa ataacagaaa      2340
     acaaaaaaag agatctttta tccctctgtg atagtaacca tattcctaaa gtatatcatt      2400
     cgttttataa aaatttataa gtatcttctt atattcttct catattatac ttgtattaat      2460
     aaatattaca atattatgtc tgttttaata aatattatct caaaagtatt atctattatt      2520
     ttttttaaat ttaagttttg aacataacca aattagtaaa cctacacttg gcaaaggtaa      2580
     agtacataga tacttaagta gataggtacc taaaatgtat catgtagtta tacaaaatgc      2640
     aataataaca aatatttaca tacctattaa ttattatttt gtattaagtg ttattgatct      2700
     taaatgtgat aaaacaggtt ataggttttt aatgttttaa ataagattgt tattacaaat      2760
     tttattttat gtgttgtaaa tcaaaaaata ttatttttcc aagcagaaat aacgacacaa      2820
     gtcaaattga aatcagattt ccaataaaac gatagtgaaa tggtacataa attatcaatt      2880
     taagaatata aaagtaaact atacaatatt aagaataata taagattgaa aaaagaaaaa      2940
     ttcatcgaaa attctattta tagtggcata ataaaacatt aaaagtcgat ttcccaacat      3000
     tttgattttt tgatttgtgt cactattctt tcaggggtgt g                          3041
//
ID   Sola1-4_LMi repbase;    DNA;    INV; 2008 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2008
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3294-3294 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(838..1188,1192..1701)
FT                 /product="Sola1-4_LMi_1p"
FT                 /translation="RDSRKHCFKKKKKRSLESWKTNKRKRLRNLGQEYTST
FT                 TGKITPARIIQPFQHICRYECKTFTEKRRRIIHEEYWKTGSWQQQTSFIVK
FT                 CVSTTKPRRPKRNCNKSKKRSTAIFLDGKVCKEFFLKTLSNRRFTTAVLNE
FT                 PSVEGLSPVDKRGKHAPGNKIPEDRLATVRNHIKSFPHYTSHYSRKDNPHK
FT                 KYLSPELSVSKMYKLYTEKCEEENILPVKECIYRKVFNSEFNLSFYKLRCD
FT                 TCNTCDRLENLIKAEAEVSIIFHTLLITLHSQVMKNPTLMTVIVVQ"
XX
SQ   Sequence 2008 BP; 710 A; 369 C; 360 G; 569 T; 0 other;
     gaagggctga aaaccataac ggtataagtg acattttttg caaaattgag ttaagtgtac        60
     attcgaccta gaaacaaggg atacttgtta gtggcacaaa gatccaggtg cctactgtta       120
     acgtctgccc tctagcggta tgtggtatat ctacatttat cgaatcacaa tcgatatgca       180
     gtgtcaggac ggtacaagca acaacatggc ggacggtcca aagatttgcg atttagctgc       240
     tcaattactg acgaaatctc gatcaaaaat gagtagttct acctttgaaa gtattcagtg       300
     tttctcagaa tcgactgacg aagatttatc agatgatgat tcagtcgcag atgaagacta       360
     tgtccctgtt caaggtaact aaagttgagg cattctgtgc aacattttag tgcttacgta       420
     aagttaggtt ttcaaatttt taatgaatgt tgtggctgag aaaaacttct taaactattt       480
     tttagtacaa aagcacactt aaaactagca taataacgtc tccttattgt caataaaaat       540
     tacattcctc aagaaaaata cagtcatgaa aatattttca cttgtaccgg tatgccactc       600
     aaatgcttaa catctttgag gtacgttagc attcacttga gacaattaca ttcatgagaa       660
     agacaatttt ttagggattt tataaggatc tttgctttat atctgtgcct aagtggtata       720
     tttccttttc tatccagatg catcatcttc agatgaaaac gaagatcata acaagaaccc       780
     taacaatgaa aaaatcctaa atacagctga agagttgtgc ttgagagcac ctcatgaaga       840
     gactcaagaa aacattgttt caagaaaaag aaaaaaagga gcttggagtc atggaaaacg       900
     aataaaagaa aacgcctaag aaacctggga caagaataca catctacaac aggaaaaatt       960
     acgcctgcaa gaatcatcca gccatttcaa catatctgcc gatatgaatg caagactttc      1020
     acagaaaaaa gacgaagaat tatccacgaa gagtattgga aaactggttc ctggcaacaa      1080
     caaacatcct tcatagtaaa atgtgtttca actactaaac caagacgtcc aaaacgaaat      1140
     tgtaacaagt ctaaaaaacg aagtactgca attttcctgg atggcaaatg agtgtgtaag      1200
     gagttcttcc ttaagacact aagcaatcgc cgatttacca cagctgtatt aaacgaacca      1260
     agtgtggaag gtctgtctcc tgttgataaa cgtggtaaac atgctcctgg aaataaaata      1320
     ccagaagatc gcctcgctac cgtaaggaac cacataaaaa gctttcctca ttacacaagt      1380
     cactattctc gtaaagataa tccccacaag aaatacctgt cgccagaatt atctgtctca      1440
     aaaatgtata agctgtatac tgagaaatgt gaagaagaaa acattttgcc agtgaaggag      1500
     tgtatttacc gtaaagtgtt caattcagaa tttaatctat cattttataa gctaagatgt      1560
     gacacatgca atacttgtga ccgtttagaa aatttaatca aagcggaggc agaggtcagc      1620
     atcatctttc acactctcct cataacactg cacagccaag tgatgaagaa tcctaccctg      1680
     atgactgtga tagtggtgca gtgaatgaaa gcgagtaagc aaaaagtgtt cattctttaa      1740
     aagcatagtg gtacaagtga cattttatga agacgttttg aaagcataat ggtacaagta      1800
     aactttatga atattttaca caatgatgcc ttacactcag aaccttcaga tacttaccaa      1860
     atatatgtac ctcaagtgca aaatattgta taaaagtttc gtttcatttt gtataacctg      1920
     tgactttaaa taaacattta aatgtttaag gtcgtttttc tcagaataac ctgtatgcta      1980
     cttataccgt tgtgattttc accccttc                                         2008
//
ID   Sola1-5_AA  repbase;    DNA;    INV; 2811 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola1 DNA transposons from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-5_AA.
XX
NM   Sola1-5_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2811
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(364..894,936..1463,1414..2346)
FT                 /product="Sola1-5_AA_1p"
FT                 /translation="MALQLLKDYGSGSSSEEEFEGFPAEAQVVSTFPLSSS
FT                 ATSTDCNDSDGSFTNEPVLKKRKLTKKERMKRSVAKGRRNTHRAKLTMCRC
FT                 HRNCNDHVSHDEIKAVNHAFWILDLEGQKNWIRQQVTRREISRRSTNWFEN
FT                 DLRKNTSFLFHLPTSNGTQVEVCRKKFLNAIGYGEDCGTYFCSNMVYRCFT
FT                 EGEDGLPVPSRRGKHKRTTPKRDAVRAHILSYNPTISHYRRKHAPKRLYLP
FT                 SDLTERAMYNDFVASSDAVSYALYCSVFKDLNISLVKLGHEQCEACVGFEQ
FT                 HDRQTGHGNPPVDQPNCSICQVQLEHLKQSRTSRDEYRKDGEMLKKGVVVY
FT                 SVDLQKVSNRRRGSWSILWTCRKLVTDNDRKYVYYLIILQFKVIQLPRLEG
FT                 LKTVVFSQRLVAYNETFAPVGSYAETQPVLPCLWTEATAGRASENILSTFI
FT                 KFLKHHKTVREITLWMDNCSAQNKNWNLFGFLILFLNSAETDTKTLNIKYF
FT                 ESGHTFMAADSFHAAVEKQMKSSPPLTYPDFEEVVHRSKRNVEVLSMGVED
FT                 FIELDFNISQYTLNQLKPRPYIDNIRLVQLTKGSLSFRYSDHVDACAEDLI
FT                 SCELFSKKQRKTITAPAYTLEKAFRRQQNPVGISSERKDTLINTISPLIEE
FT                 SKLIYWTSLATKQT*"
XX
SQ   Sequence 2811 BP; 841 A; 608 C; 625 G; 737 T; 0 other;
     ctgccgctct aatctagtcc gtcctatatg taaaaagtga gtgctgagat aaagtcagaa        60
     aaagtcaaaa acattgtcca ccattttttc actatttaac attcattcaa aaacaaactt       120
     atacccacat catcttcttt gcggcacaaa ctttaataat ttttattaaa aatagaaaaa       180
     tattttcaat aaattcatta ttttcaattt tttgaatgcg agacagactt gactttattg       240
     aatcccaaat acaggcagat cagtctttgt gatcaaagaa ggcgaatttc tacaatctgt       300
     cgagaatcca aacttcgatt atcacgtcgc gtttttcatt gccagttccg ggtgtgatac       360
     aaaatggccc tacagctgct caaagattac ggaagcgggt ccagctcgga agaggagttc       420
     gaaggatttc cggcggaagc acaagttgtg tcgacgttcc cattgtcttc ctcagccaca       480
     tcgacggatt gcaacgattc cgatggaagt ttcacgaacg agccggtttt gaagaagcgc       540
     aagctgacca agaaggaaag aatgaagcga tctgtggcca agggtcggcg caacactcat       600
     cgtgctaaat tgaccatgtg ccgatgccac cggaactgca atgatcatgt ttcccacgac       660
     gaaatcaaag ctgtcaacca cgcgttctgg atccttgatt tggaaggaca aaagaactgg       720
     attcggcagc aggtgacgcg tcgcgagatc tcacgtcgtt ccacaaattg gtttgagaat       780
     gatctgcgta agaacacttc gttcttgttc caccttccaa catctaacgg aacacaagtt       840
     gaagtttgcc gcaaaaagtt cctgaacgcg atcggttatg gcgaagattg cgggtaaagg       900
     ttttcgatca gctggacatc cttagtttta actagactta tttttgtagc aacatggttt       960
     atcgatgctt cacggaagga gaagatggat tgccggtgcc atcacgacgt ggtaaacaca      1020
     aacggaccac gccaaagcgt gacgcagtcc gggcacacat tttaagctac aacccgacca      1080
     tctcccacta ccgtcgcaaa catgcaccaa agcgattgta tcttccatcg gatttaaccg      1140
     agagggcgat gtacaacgac ttcgtggcca gtagcgatgc ggtaagctac gctctgtact      1200
     gcagcgtgtt caaagacttg aacatttcgc tggtcaaact tgggcacgag cagtgcgagg      1260
     cctgcgttgg attcgaacaa catgatcggc aaactggtca cggaaacccg ccggtggatc      1320
     agccgaattg ctcgatttgt caggtgcagc tggaacatct gaagcaatcc cgaacctccc      1380
     gggacgagta caggaaggat ggggaaatgt tgaagaaggg ggtcgtggtc tattctgtgg      1440
     acctgcagaa agttagtaac agataatgat agaaaatacg tttattacct aataattttg      1500
     caatttaagg tgatccagct accgcgtctc gaggggttga agacagttgt gttcagccag      1560
     agattggtcg cgtacaacga gacgtttgcc ccagtgggaa gctacgccga aacgcagcca      1620
     gtgctgcctt gtctttggac cgaggcgaca gctggccgtg cttctgaaaa tatattgagc      1680
     acgttcatca aattcttgaa gcaccacaaa accgttcgcg aaatcacgct gtggatggac      1740
     aactgttcag cgcaaaataa gaactggaat ctttttgggt tcctgatttt gtttctgaat      1800
     tccgctgaaa ccgacacgaa gacgctgaac atcaagtatt tcgagtcagg gcacaccttt      1860
     atggcggcgg actcgtttca tgctgcagtg gagaagcaga tgaagtcgtc gccaccatta      1920
     acgtaccctg acttcgaaga agtggtgcat cgctccaagc ggaacgtgga ggtattgtcg      1980
     atgggggtcg aggattttat cgaacttgat ttcaacatct cacaatacac cctaaaccaa      2040
     ctgaagcctc ggccctacat cgacaacatc cggctggttc agttgacgaa agggagcctg      2100
     agcttcaggt acagcgacca cgtggacgca tgcgctgaag atctaatcag ctgtgagctg      2160
     ttttcaaaaa aacagcgcaa gacgatcact gcaccagcct acacgttgga gaaagcattc      2220
     cggcgacagc aaaacccggt cggaataagt tccgaaagga aagatacgct gatcaacaca      2280
     atctctccgt tgatcgaaga gagcaaattg atttactgga cgagcttggc gaccaaacaa      2340
     acttaatttt tgttttaact gcaatattct gtactatccc atcataacat catttccgtt      2400
     aaaaataaac gagcgatttg taaaaaatta taaaatgatt gagttcattc ataagtgacg      2460
     gaaataatta gcatttaggt gtctaaactc aaacaaactg ttgaaaaaca gtcaaaaatc      2520
     actaaatgtt ttccgatttg ttcttaatta gttaatatat atttaattta tattatttta      2580
     ccattttgtt ctaactttga atgatcttgc aaagtgaatt tattgctgtg actgttctgc      2640
     cttgattttg catatgggac agcaccaaag tgatttttgt tttcgaaatt atagaacaaa      2700
     ctactatttt ttattcaatt atataataaa tcaacataaa aaataacgtt tcccaggttt      2760
     atctcaaaat cgatcaaaat acatatggga cggactagat tagagcggca g               2811
//
ID   Sola1-5_AP  repbase;    DNA;    INV; 3705 BP.
XX
AC   ABLF01016303.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-5_AP.
XX
NM   Sola1-5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3705
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(588..839,843..1109,1113..1349,1500..3173)
FT                 /product="Sola1-5_AP_1p"
FT                 /translation="MKKARANKLVTLALNVTNRNILSHDHREINVSQSEYS
FT                 VDLFNTSTSAVDFKPNENLEEKDMDNCGKRNIIFIPNSYTINKLILNLILF
FT                 VDYDDSNELKHTGCSSQVMHYNIESEVTEINVSQSEYSVDLFNTSTSAVDF
FT                 KPNENLEEKDIDDYGKRNIIFIPNSYTINKLILNLILFVDYDSNGSSLFEM
FT                 DSDESYIPPGPLDTFSDSLSDQFDISTNLIESNVIQTDETEVIQKKKKTKK
FT                 GKSRTLEKNYCLGNNNIFFFRYKFNDNFPEDVRSLRCQEYWNIGDYGKQKM
FT                 YLSGLIQNVPVIRKKVITTKPKQVSRIYSITDVKGEKKRVCLNFFCTTFSI
FT                 SHRVVNLCMKNIGDNGLFVGKDNRTNHKALNKTPISALNLVKEHINSFPKV
FT                 ESHYCRRDSSKLYLSSDLNRALMYRLYTDHFCKERNISPVSFFIYKQIFNS
FT                 FDPQLSFFLPKKDQCFHCNAYNNAIDKTDIENDWVQHKQREKVAMQMKSDD
FT                 KKKSALDNGKSFRTISFDLQAILSLPFSGENQLYYRRKLNVYNFTIFDSYK
FT                 NDGYCYVWDECNGKKGSAEIGTCLLNYLSQLPESVTHVSTFSDTCGGQNRN
FT                 KNILAAMLYAVNRIDNIETIDVKFMESGHSYLEADSIHATIERHRKHKKVF
FT                 TTREWALLFSSARIKPSPYKVTTMHYNEFYNFEKLVSSMIQNTTLNTEKEK
FT                 VNWLKIKWMRFQKNEPYIMQYKYDQQETVFKKIDTSMKRGAGRKQEWTSVS
FT                 LDIKYSKKIPISEAKKKDLKYLMNCKIIPNDYYQFYNDLPTTKKCQPQMSS
FT                 DDEDTAD*"
XX
SQ   Sequence 3705 BP; 1434 A; 468 C; 559 G; 1244 T; 0 other;
     cgatggcgta gcgcacaagt gtgataagtg acattttttt gaaaaatgag ttaagtgcat        60
     aatcaattta atcatacaat tctgcacatt atgcacaaac gttgtaagtg aacagttcat       120
     tatttactcc gctagatgtc gtgtttattt gaaataagta cgaatctcta aaattagaaa       180
     attacaaatg ttgtaagtga ctttacaaca tttgtgattt tcatgaatgt ctttacgttg       240
     cgttcaaatg tgttaagtga cgttaaaaca tttgtgaaca attttatgaa ataataaaga       300
     tattattaat attaatattt gtcacgtttg gcgcgcattt tataatcata gagaatagaa       360
     acatttctat aacctatcaa gcacacctat ctagcatatt attattatca atattagcac       420
     cataatatta aaagtttatt ttcttgtgat aagttctacg cgtgacatcg tgtattgcat       480
     ttaaagtaag ttaggtatta ttaattaaaa ctatttatga tgagtatgca gcttacaatt       540
     attttactta tttaaatacc ctttattaat aattattcaa aataaaaatg aagaaagcaa       600
     gagcaaataa attagttacc cttgctctta atgttacaaa tcgcaacata ttgtcacatg       660
     atcatcgtga gattaatgta agtcaatcag aatatagtgt tgatttattt aatacaagta       720
     cttcagctgt tgattttaaa ccaaatgaaa atttagaaga aaaagacatg gataattgtg       780
     gtaagagaaa cattattttt attcctaata gttatacaat aaataaatta atactgaatt       840
     gattaatatt atttgtagat tatgatgact caaatgaact gaaacatact ggatgttcta       900
     gccaggttat gcattataat attgagagtg aagtaacaga aattaatgta agtcaatcag       960
     aatatagtgt tgatttattt aatacaagta cttcagctgt tgattttaaa ccaaatgaaa      1020
     atttagaaga aaaagacata gatgattatg gtaagagaaa cattattttt attcctaata      1080
     gttatacaat aaataaatta atactgaatt gattaatatt atttgtagat tatgactcaa      1140
     atggatcatc actgttcgag atggattctg atgaatcata tataccgcca ggaccacttg      1200
     acactttttc tgatagttta agtgatcagt ttgatatttc tacgaattta atagagtcta      1260
     atgtaattca aacagatgaa accgaagtta tacaaaaaaa aaagaaaaca aaaaaaggca      1320
     aatccagaac tctggaaaag aactattgtt aaaaaaaaaa gattgagtgg agaaatgtac      1380
     acaaatcgaa atgccaaaac atttgataaa aaaataccaa aaccagttaa ttgtatcaag      1440
     tgtaggtagg tcaagtacaa catttttaaa taattgtaat aatcattatt gtatcttaat      1500
     taggaaataa taatattttt tttttcaggt acaaattcaa tgataatttt ccagaggatg      1560
     ttcgttcttt gagatgtcaa gaatattgga atattggtga ctatggaaaa caaaaaatgt      1620
     atctatcagg cttaatacag aatgtgccag ttattcgtaa aaaagtaatt actactaaac      1680
     caaagcaagt gtcaagaatc tattcaataa ctgatgtaaa aggggaaaaa aaacgtgtgt      1740
     gtttgaattt tttttgtaca actttttcta ttagtcatag agttgtcaat ttatgtatga      1800
     aaaatattgg agataacgga ctgtttgttg gaaaagataa taggactaat cataaagctc      1860
     ttaataaaac tccaatatct gcattaaact tggtaaagga acacatcaat agtttcccta      1920
     aagtcgagtc tcattattgt agacgtgact ctagtaagct atacctatca tcagacctta      1980
     atagagctct tatgtaccgt ttatacacag atcatttttg taaagaaaga aatatttctc      2040
     ctgtttcttt ttttatttat aaacaaatat ttaattcatt tgatcctcaa ctgtcgttct      2100
     ttttaccaaa aaaggaccaa tgtttccatt gtaatgcata taataacgca attgacaaaa      2160
     cagacataga aaatgattgg gtacagcata aacaaaggga aaaagtagcg atgcaaatga      2220
     aaagtgatga caaaaaaaag tctgccttgg ataatggaaa atcattcaga acaattagct      2280
     ttgatctaca agctattcta agcctcccat tttctggaga aaatcaatta tactatagaa      2340
     gaaaattaaa tgtgtataac ttcacaattt ttgattctta taaaaatgac gggtattgtt      2400
     atgtctggga cgaatgcaac gggaaaaaag gaagtgcaga aattggtaca tgtttattaa      2460
     attatttgtc ccagttacca gaatcagtta ctcatgtttc aactttctct gacacttgtg      2520
     gaggccaaaa cagaaataag aacattttgg cagcaatgtt atatgcagta aatcgcatag      2580
     ataatataga aacaattgat gttaaattta tggaatctgg tcattcgtat cttgaggcag      2640
     actctataca tgctactata gagcgacata ggaaacataa aaaagtattt accaccagag      2700
     aatgggcatt attgttttca tctgctagga taaaacctag tccatacaaa gttacaacta      2760
     tgcattataa tgaattttat aactttgaaa aattagtgag ttctatgata caaaatacaa      2820
     ctttgaacac agaaaaagag aaagtaaatt ggttgaagat aaagtggatg agatttcaaa      2880
     aaaatgagcc ttatatcatg caatacaaat atgatcaaca agaaacggta ttcaaaaaaa      2940
     tagacacatc tatgaaaaga ggtgcaggta ggaaacaaga atggacttca gttagtttag      3000
     atatcaagta ctcaaaaaaa attcctatca gcgaagcaaa gaaaaaagac ttgaagtatt      3060
     taatgaattg taaaataata ccaaatgatt attatcaatt ttataatgac ttgccaacca      3120
     ccaaaaaatg tcaaccacaa atgtcctcag atgatgagga tactgctgat tgaagttcct      3180
     attatctata ttctatattt gtattattaa ttaataatgt tatattttga taagttgtca      3240
     taaaataagt tgaatttctt tttagaaatt ttatatactt taatattaaa aggttgaatt      3300
     taatttgtta tacaatatat taaagcagtt ataataacaa ttataatatt atttaagtaa      3360
     ttgttgttct ttattgaaat tagaagaaaa atgtgatgtg tttaatcatt actttttacg      3420
     tgtacaaaat gtgttaagta caatagcttt ttttttaaat ttttttttaa gaatacaaat      3480
     gtgataagtg caggttttta aaaaaaaaaa ttttttctcg agatttgtct atagtagaac      3540
     aataattttt aatcctcatt actcattaca tgttaaggaa aatttaacaa aaatttcagt      3600
     acagttcgtt acatttttga attgttataa catctcaaac ttaaaaatcg ttctcctgaa      3660
     caattacgaa aatgtcactt atcacacttg tgcgctacgc catcg                      3705
//
ID   Sola1-5_LMi repbase;    DNA;    INV; 2050 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2050
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3295-3295 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(589..852,825..1646)
FT                 /product="Sola1-5_LMi_1p"
FT                 /translation="MEVNAYTCIVCNLSIIVIDNFDSFRCKKDCFSLFDDD
FT                 AKIDIIAHLNSFSDKNQQDIFLQGLIEVQDVKSRRPRKEDPKLRMFLAYII
FT                 IKNVFGIHNMKTKQSHFYVYHEGEAKKGANEVCSFLYNYIEKYISKDVNEL
FT                 HLFSDGCAGQNKNHPMIRFCLTLVSTGRFRKMKHYFPIRGHSFLPNDRDFG
FT                 TIKKFVRRHDRIYLPEEYAIMIKKASSKYSVETIDNVAVLAFKNWWPAYFK
FT                 KACLSESSVGKIPKEQKVSFSPSKWMTFQYDAHYPGQVKTEQFIDGLIRET
FT                 FQLLQSFNKHPVLPIELAYPGKQVPINVKKIQDLLKVKRYIPAEYVEFYDQ
FT                 LQEWPTEGGTNNEDDDQED"
XX
SQ   Sequence 2050 BP; 678 A; 347 C; 411 G; 614 T; 0 other;
     gaatcggtca ttgcaaaaag gtcataagtc aactttttta cgaaaatgag ttatccattg        60
     gaaatggatg ggaaagtgta gccggattca tacgtacaag aagggcagaa gtcagctttc       120
     aaatggtgtc actatcgacc cttgaaatct tcgttcattg caaaaaggtc atgagtcatt       180
     gactcatgcc gtttttgcaa tgactgtgtg gaggtgtatt taatcgaacg cagaagttat       240
     tggcggcgtt gcgctgcttt cccgcgtatt ttgtcgtctg aggttagcat cactgcaaca       300
     atccattgtt gtgtttacag cattgtaggt tcaaataata ggtcattact gtcgcattca       360
     gaagccactt atttgtcgag gtgtaattat gtctgcgtct tcttcggact ctgaaatgcc       420
     tcctgtaggc aagaaacgga caagaaatgc tgataagtac aaaaggaata ttattcgtga       480
     ttcaaaagta aagggagtgg aatacgtgaa ttggaaaggt gagaaaattc agcgtcggag       540
     tacaggagat gactgcaagt gagtaaaata cgtgtacttg atttctgtat ggaagtaaat       600
     gcatatacct gcatagtatg caatttaagc attatcgtaa ttgataactt cgactctttc       660
     aggtgcaaaa aggactgttt ttctctgttt gatgatgacg cgaagataga tatcattgct       720
     cacttgaaca gtttcagtga taagaatcaa caagatatct tcctgcaagg gctaatcgaa       780
     gttcaagatg tcaagagcag aagaccgcga aaagaggatc ctaaattaag aatgtttttg       840
     gcatacataa tatgaaaacc aagcagtcac acttttatgt gtaccatgaa ggcgaagcga       900
     agaaaggcgc aaatgaggtt tgctcatttc tgtataatta catcgagaag tatatctcaa       960
     aagatgtgaa tgagcttcat ctcttctctg acgggtgtgc tggtcaaaac aaaaatcacc      1020
     caatgattcg cttttgttta acacttgtat caactgggag atttaggaag atgaaacatt      1080
     acttccctat acgcgggcat agtttccttc caaacgatag agattttggg accataaaaa      1140
     aatttgtaag acgtcatgac cggatctact tacctgaaga gtatgccata atgatcaaaa      1200
     aggcatcaag taaatactca gtggaaacta ttgataatgt tgctgtatta gcctttaaaa      1260
     actggtggcc tgcctatttt aaaaaggctt gcctctccga atcaagcgtg ggaaaaattc      1320
     ccaaggaaca aaaagtttct ttttctcctt caaaatggat gacttttcag tatgatgcac      1380
     attatcctgg gcaagtaaaa acagagcaat tcatcgatgg tctcatcaga gagacattcc      1440
     agctcctcca aagcttcaat aagcatcctg tacttcccat cgagttggcg tatcctggaa      1500
     agcaagtgcc gatcaatgtc aaaaaaatac aagatttatt gaaagtgaag aggtatattc      1560
     cagctgaata tgtggaattt tatgaccaac tgcaagaatg gccaacggaa gggggaacaa      1620
     ataatgaaga tgatgatcaa gaagattgac ttggtttatt gtactctatt ttcatgttgt      1680
     tataaaacac acaaatgttg cgaaaaatgt tacttcagat aataatattc acatttcatt      1740
     ttactgtgtt aaatattaac tgatttttca ataaaatagg caattatttg caagtaatgc      1800
     tttcatttgt tgcaacacac ggtcgttcat tgcaaaaagg tcataagtca gcaattttta      1860
     aattaatatt gtggttaaac tattaattac aaaacaaaaa tacacagtgc aacacagtgc      1920
     ttggcacctc actaaatatt gatattaaaa taacaataaa taaataaatg gtttatgctg      1980
     tagaacgttt tttccttctc ctgtaaaatt ttactttcat gactaatgac ctttttgaaa      2040
     tgaccgattc                                                             2050
//
ID   Sola1-6N1_AAe repbase;    DNA;    INV; 1282 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-6_AAe; Sola1-6N1_AAe.
XX
NM   Sola1-6N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1282
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1289-1289 (2011).
XX
DR   [2] (Consensus)
XX
CC   4-bp TSDs. This is an internally deleted version of
CC   Sola1-6_AAe.
CC   The identity is 91-95% to corresponding sequences of
CC   Sola1-6_AAe.
XX
SQ   Sequence 1282 BP; 397 A; 246 C; 276 G; 363 T; 0 other;
     ctgcccataa atgcatacca gtcacactag caaaacagcg cacccaagaa aaacgcgata        60
     gaagtcgtga acacctgcat gctttcttta ctccaattat attgaaaatg cgatgttttc       120
     gcacccaaat ttgaactcaa atggtgcaat gaactattga ttacagtatt acatacattt       180
     tgtttattaa ttttctcaaa tatttagtta atatacggaa aaatgtacgc gtgactgata       240
     tgcgtttatt tgctcttgaa tgtacgagaa taaacgcata acagtatcag tgcttactat       300
     gatgcatcgg tcttcacatg tgtattattg ttgttttgac agtttagtgt ccgcattcaa       360
     agtcgcgaaa atgtctgctc tcgattattt gaaaagttat ggtacttctg atagttccga       420
     ggatgagtgc aggaatttgg ccgatggcgt cccgttggac aatgacgcgg gctctgaaga       480
     caagttcgct ggcttcgacg ataaggacgg caatgctggc ggcgacggca tatttcagtt       540
     tccaccgaag acgtagcatt gggtaagcta tttaaaatcc ttggaggaca ctatatatgt       600
     gacggggact gatgaaatgg actcagacgg aagtcaaaca gccgttgatg aatttgccaa       660
     aaacgcaaga gaacaacaaa atgaaagcga cacacaacgc caagaagcgt cgattatcgc       720
     accaagtaaa gcttgtcact tgtgggtgta taatgaacta cgggcttaaa ataccgaaga       780
     aaacccgtat tcgtcttaac acgttgctct aggcattgga ttcacgagag caaaccagct       840
     atatacgcca gtgcgtggaa cgaggggaac gagtggatgt tcaaagacgg cgtcggtaca       900
     agtacgagga agacgatcca aggaaatcca atagctttgt atttcatctg gctgaatcaa       960
     acgattcttc cgtttaagtg tgtcgtagat tttttctgac cactctgggt tacggcaaca      1020
     attgtggata agtatatttt cctttacttg acttacttat caacacaatt tgtcgcaagt      1080
     ccttatcaca caagtcgcga gactgacatg cgtttattag taacgtggga cagaccaagt      1140
     tcgatattgt ttttaacatt tctagaacaa acgtattatt ttcttataat acaatgaaag      1200
     tacatgcaat ttaatgacgt ttcccgtaat taactaaaaa atgacaaaaa gtcacgtggg      1260
     actgttatgc atttatgggc ag                                               1282
//
ID   Sola1-6_AAe repbase;    DNA;    INV; 2859 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-6_AAe.
XX
NM   Sola1-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2859
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1290-1290 (2011).
XX
DR   [2] (Consensus)
XX
CC   4-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(371..1038,1099..1591,1662..2537)
FT                 /product="Sola1-6_AAe_1p"
FT                 /translation="MSALDYLKSYGTSDSSEDECRNLADGEPLDNDTGSED
FT                 NFAGFDDKDGCDGNAGGDGSFLFPPKTYPEHWVSYLKSLEDTEYATGTXEM
FT                 DSDGSYTAADEFAKKRNRTKKELKARYNAKKRRLLHQVKLVDCGCKLNCGI
FT                 KISKEDRIRHNTVFWALDSREQTSYIRQSVQRVDVQRRRRYKYEEDDPKKF
FT                 NSFVFHLAESNGSSVKVCRRFFLNTLGYGNNCGNIIYRCVEQDPPKTSQRG
FT                 KYKRSTEKRDAIQKHIMSYGPTVSHYRRAHAPNRLYLPSDLSEKNMHQNFL
FT                 DTHDITATYALYCRKMREMKISLVKLGKEECEVCVSALQHRKTSSHPETIS
FT                 TDPCSTCTRYDKHLRIAKISRDAYRSDGEAVIEDTLVLAVDLQKVIQLPRL
FT                 DGLKSIMFSQRLLAFNQTFAPVAKYAKSFPVMACTWDESTAGRSANDIAST
FT                 FHKVILRCYKKQIILWLDNCASQNKNWGLFLHLILLVNSKYTQVQELTLKF
FT                 FESGHTFMAADSYHAAVEKKMKSKPPVTFHDFKDVLLFAEKKVEVLEMQPQ
FT                 DFFESQLQISQYTLNNLNPRPYMENIKQVVIRKGSFVLNYAESLDSDAVLH
FT                 SAMLFSKKQLKMVTLPNFDLVAGLKFKQEPRGIEPERKTALLKVILPVIDD
FT                 EKKEFWRTLAEKAILNDSDDDDDDEYDTI*"
XX
SQ   Sequence 2859 BP; 881 A; 570 C; 612 G; 794 T; 2 other;
     ctgcccataa atgcatacca gtctcactag caaaacagcg cacctaagaa aaacgcgatg        60
     gaagtcgtga acactttcat gctttattca ctccaattaa attgaaaatg cgatgttttc       120
     gcacccgaat ttgcactcca atggtgcaat gaactattaa ttacagtatt acatacattt       180
     tgtttattaa ttttctcaaa taattagtta ttatacggga aaatgtacgc gtgactgata       240
     tgcgtttatt tgctcttgaa tgtacgagaa taaacgcata acagtatccg tgcctactat       300
     gatgcatcgg tcttcacatg tgaattattg ttgttttgaa agtttggtgt ccgcatgcaa       360
     agtcgcgaaa atgtctgctc tcgattattt gaagagttat ggtacttctg atagttccga       420
     ggatgagtgc aggaatttgg ccgatggcga gccgttggac aatgacacgg gatctgaaga       480
     caacttcgct ggcttcgatg ataaggacgg ctgtgacggc aatgctggcg gcgacggcag       540
     ctttctgttt ccaccgaaga cgtaccctga gcattgggta agttatttga aatcgctgga       600
     ggacactgaa tatgcgacgg ggactgawga aatggactca gacggaagtt atackgccgc       660
     ggatgaattc gccaaaaaac gcaatagaac gaaaaaagaa ttgaaagcga gatacaacgc       720
     caagaagcgc cgtttattgc accaagtaaa gcttgtcgat tgtgggtgta aattgaactg       780
     cgggattaaa atctcgaagg aagaccgtat tcgtcataac acggtgttct gggcattgga       840
     ttcacgagag caaaccagct atattcgcca gagcgtgcaa cgagtggatg ttcaaagacg       900
     gcgtcgctac aagtacgagg aagacgatcc aaagaaattc aatagctttg tgtttcatct       960
     ggctgaatcg aacggttctt cggtcaaagt gtgtcggaga ttttttctga acactctggg      1020
     ttacggcaac aattgtgggt aagtatattt cccttacttg gcttataaac acaatttgag      1080
     attttttttc ttgtttagca acataattta tcggtgtgtt gaacaagatc ccccaaaaac      1140
     atcacagcgc ggaaagtata agcgaagcac ggagaagcgt gatgcaatcc aaaagcacat      1200
     aatgtcgtac ggtccaacgg tttcccatta ccgcagagcg cacgcgccca accgattgta      1260
     cctgccatct gatctatccg aaaaaaatat gcatcaaaac ttcctggaca cgcacgacat      1320
     tacagcaacg tacgctcttt actgcagaaa aatgcgagaa atgaaaatct cgttagtaaa      1380
     actgggaaag gaagaatgtg aagtttgtgt ttctgcactt cagcatcgca aaacctcatc      1440
     ccaccctgaa acgatcagca cagacccttg ttccacatgt acacgctacg acaaacattt      1500
     gcgaattgct aaaatctctc gtgatgccta ccgatcggac ggcgaagcag taattgagga      1560
     taccttggta ttggcagtgg atctccaaaa ggtaacgtta aataaaaaca taagccagta      1620
     gtattaaata aatctatttt tttataattt tcatctccta ggtcattcag ctgcccagac      1680
     tcgatggtct caaatccatt atgttttctc aacggcttct ggcatttaat caaacattcg      1740
     ctcccgtagc gaaatatgca aaatcgtttc cagttatggc gtgtacatgg gacgagtcta      1800
     cggctggacg gtcggcgaac gatatagcaa gcacttttca taaagtaatc ctgcgatgct      1860
     acaaaaagca gatcatcctt tggcttgaca attgtgcctc ccaaaataaa aattggggtt      1920
     tgttcctaca tctgatactt ttggtcaact ccaaatatac tcaagtgcag gagcttaccc      1980
     taaagttttt tgagtcggga catacattta tggcggcgga tagctaccat gcagctgttg      2040
     agaaaaaaat gaaaagtaag ccaccggtaa ctttccacga cttcaaggat gtgttgcttt      2100
     ttgccgagaa gaaggtagag gtacttgaaa tgcaaccgca ggattttttt gagtcacaac      2160
     tgcaaatctc gcaatataca ctcaacaacc tgaatccccg gccatacatg gaaaatatta      2220
     aacaggttgt gattcgaaaa ggaagcttcg tgttgaacta cgctgaatcg ttggactcgg      2280
     atgcagtatt gcatagtgcc atgctgttct cgaaaaaaca gcttaaaatg gtaacattgc      2340
     ccaatttcga tctggttgct ggtctaaaat ttaagcaaga accccgagga attgagccag      2400
     aacggaaaac agctcttctg aaagtaattc tcccagtaat tgacgacgaa aagaaggaat      2460
     tttggcgcac cttagcagag aaggcgattt tgaatgactc tgatgatgat gatgatgacg      2520
     aatatgatac aatctagaaa ttcttcgaac ctttatataa tgaaatcgac gtaaatcaat      2580
     aaaacttcct ttaaatttct ttgcttgtga actgcgacat taatctagta gcaattcttt      2640
     ttttttcctt gtattaaata tatatcttga gtcgcgagac tgacatgcgt ttattagtaa      2700
     cgtgggacag accaagttcg atgttgtttt taacatttct agaacaaacg tattattttc      2760
     tcataatatc atgaaagtgc atgcaattta atgaagtttc ctgtaattaa ctaaaaattg      2820
     acgaaaattc acgtgggact gttatgcatt tatgggcag                             2859
//
ID   Sola1-6_AP  repbase;    DNA;    INV; 3804 BP.
XX
AC   ABLF01029374.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-6_AP.
XX
NM   Sola1-6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3804
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(726..770,789..998,1045..2910)
FT                 /product="Sola1-6_AP_1p"
FT                 /translation="MAYILCLNFGLKYVYIILFFTVGSNNDDVIGNNNIMV
FT                 PFAFENSNEYMSNNNNNDSAESFSNNIENQNDFTESTETSGLNFKINFNKH
FT                 FTHNIGSGCNVIVDNSEVNTGLENADESNVLAVRTRKKRSNPKNWSYNLNK
FT                 KNKLNGKEYYGKKKTNGVWSYNIPKPAKVLKFVCNCKLSSKNTKLKCKKVK
FT                 EEERLKIFEEFWKLSKNEKQLYIKNYTKIISTLRLRGTVTPSRRNSSIQYY
FT                 LQTADDRVRVCKVLFLNTLGIGEKVCLKILSHKDSNNSISDNDIDSNFNPT
FT                 EDTLNISNNQRSTKTTVTEKKSFLYKFLNSLPKLESHYCRANTSKLYLEPN
FT                 WTSKTELYNFYCNDYCTTHNTTPMSSYVFCKALEEQNIGLFQPKKDACDIC
FT                 TAFDTGNLSQEEKEKHDSMKKEARMEKERDKMSENEIFTMDLQSVLLCPKS
FT                 NVSSLYYKTKLIVHNFTVYDLKRKNGFCFLWNESEGGLSSNEFSSIIIYFL
FT                 QKYVINSNIGNLNSIILYSDGCTYQNRNSTLSNALLNLSINSNVTIIQKFL
FT                 QRGHTQMEVDSMHSTIERKVRNRKINVPADYISICKSACKKSPYTVEYLTH
FT                 DFFKSFSSLNFCKSIRPGNKKGDPVVTNLKAIKYEPDRQIKYKLRFTEEDW
FT                 STLKLKNSKHIAVKFDDLPQLHNDRLKIKKEKFEHLQQLKLTMEKDYHAFF
FT                 DNLPKE*"
XX
SQ   Sequence 3804 BP; 1532 A; 461 C; 507 G; 1304 T; 0 other;
     cctatttagc aaacggcgta actccaaaaa attcaaattt cattttttca tatcattcaa        60
     tagaaaaaaa aaatgcgcgt cgaatggtat cataatcata atatttaagt gtgttttctt       120
     ccatgaaacc ggtgataatt tatacgcatt agtcgtaact ccgataaaca aataatataa       180
     tttctataga aaccggcgta tctccatatt atcagtttac aacatcattc tgtttaaatt       240
     tatgttaaaa atctaaaatg tatcgttgct aaaaccatta aatttattct gttggctaaa       300
     acgtgaacaa gatgacatct agagcaaaaa aacttttaga aatggctaaa agtgttgctg       360
     caccatacaa tatcatgcca agttctccaa agttgactcg gaaaaagtca agtgtgtaaa       420
     ataaaaaact ttaattgtat tatataaata tgaaatttgt tttattttat tccataaata       480
     cgtagtgtca attcaaaata ggtaggtatg tactttttat ttttcgttta ggtaatatta       540
     gaaatgaaaa caaacaaaat aacagagctg ttgaaaacaa tttcgatatt gacacttata       600
     ttagtgaaca gttagaaaat ttaaatgaag atgatcagtt aatttatact tcaaataagt       660
     atgacatagt agagtttgtt gctagtgaag ctgttcaaga aactggtagt ttagattcag       720
     gtttgatggc atacatttta tgtttaaatt ttggtttgaa gtatgtatat tagctactag       780
     atttttaaat aatattattt tttactgtag gtagtaataa tgatgatgtt attggaaata       840
     ataatattat ggttccattt gcatttgaaa attcaaatga atacatgagt aataataata       900
     ataatgattc tgcagaaagt tttagtaata atatagaaaa tcaaaatgat tttaccgaga       960
     gtacagaaac ctcaggtttg aattttaaaa ttaattttta actaacttct aatcgatagg      1020
     tacttattat gtttagtata gtaaaacaaa cattttactc ataatatagg atcaggatgt      1080
     aatgttattg tagacaattc agaagttaat actgggttag aaaatgctga tgagtccaat      1140
     gtgttagcag tacgtacaag aaaaaaaaga tctaacccaa aaaattggag ttataactta      1200
     aacaaaaaaa ataaattgaa tggcaaagaa tattatggta aaaaaaaaac gaatggtgta      1260
     tggtcataca atatacctaa acctgcaaaa gttttgaaat ttgtatgcaa ctgtaaacta      1320
     agctcaaaaa atactaaatt gaaatgtaaa aaagttaaag aagaggaacg gttgaaaata      1380
     tttgaagaat tctggaaatt gtcaaaaaat gagaaacaac tatacattaa aaactataca      1440
     aaaataattt caactttaag acttagaggt acagtaactc cttcaaggag aaattcatct      1500
     atccaatact atttacaaac agctgatgat agggtaagag tttgtaaggt actattttta      1560
     aatacactag gaattggtga aaaagtttgt ttaaaaattc tcagtcataa agacagcaat      1620
     aattcaattt ctgataatga tattgatagt aattttaacc ccacagaaga cactttaaac      1680
     atttcaaata atcaacgaag tactaaaacc actgtaacag agaagaaaag ttttctttac      1740
     aaatttttaa actctttgcc caaattagaa agccattatt gtagagcaaa tacatccaaa      1800
     ttatacttag aaccaaactg gacttctaaa actgaattgt ataattttta ttgtaatgat      1860
     tattgtacca cccataatac cacaccaatg agcagctatg tattttgtaa agctttagaa      1920
     gaacaaaata ttggattgtt tcaacctaaa aaagatgcct gtgatatttg cacagccttt      1980
     gatacaggaa atttatccca ggaagaaaaa gaaaaacatg acagtatgaa aaaagaggca      2040
     aggatggaaa aagaaaggga caaaatgtca gaaaatgaaa tctttactat ggatctgcaa      2100
     tctgtcctct tatgtccaaa atcaaatgtt tcgtcgcttt attataaaac caaacttatt      2160
     gtgcataatt ttacagttta tgatttaaaa agaaaaaatg ggttctgttt tctatggaat      2220
     gaatctgaag gtgggttatc ttccaacgag tttagttcta ttataattta ttttttacaa      2280
     aaatatgtta taaactcaaa tattggaaat ttgaattcta ttatactata tagtgatggt      2340
     tgtacatatc aaaacagaaa ttctacttta tctaatgcat tacttaactt atcaatcaac      2400
     tcaaatgtca ctataataca aaagttcctt caacgtggcc atacacaaat ggaagtcgat      2460
     agcatgcatt ctacaattga aagaaaagta cgaaacagaa aaataaatgt accagcagac      2520
     tatatttcaa tttgcaaatc agcttgtaaa aaaagtcctt ataccgtaga atatttaaca      2580
     catgattttt ttaagtcatt ctcttcctta aatttctgta aatccattcg acctggaaat      2640
     aagaaaggag atcctgttgt aacaaattta aaagctataa aatatgaacc tgatagacaa      2700
     atcaaatata aattaagatt tactgaagaa gattggagta ctcttaaact taaaaatagc      2760
     aaacacattg cagttaaatt tgatgatcta cctcaattac acaatgatag actcaagata      2820
     aaaaaagaaa aatttgagca tcttcaacaa ctaaaattaa ctatggaaaa agactatcat      2880
     gcgttttttg ataatttacc taaagagtaa agctattttg cacaacaatt gataatgatt      2940
     tataattttt aatttgttat aattttactt agacatttta tttaaagagg aaaaaatgtt      3000
     ttatttgttt attattttta gtttctaata ttaattaatt tgtataatat tgttattatt      3060
     tatcaaggtt atttactttt attttatatt atattctata ccaagaatta gttcctacct      3120
     aatgttgaac ttaaacagtt acttaattat taaaacagat actcaatttt attttataaa      3180
     acttattata ttttataaca tttattttat atttataaat attgtatact gtgatgatta      3240
     atattaatac tattcatcaa tattgattaa taattaatat tatttataat ttgttgttat      3300
     ttaggttaag aagttgtaaa accttaaata attattttta ataaatacaa agtcaaaata      3360
     aatcaagtaa taaatataat ttataatatt tttaaaataa attaacttac attgttctca      3420
     aaattatttt tgaaaacaat aaaataaaat ttgtcttaac tataaaaata gaaattctag      3480
     aagaaaaaga cgtaagtcca aaaaattaga attgatcgta tctccaagaa tgtaactatt      3540
     atagaagaaa cagacgtaag tcgaaaaatt agaattgatc gtatctccaa gaatgtaact      3600
     attatagaag aaacagacgt aagtccataa aaaatgttat ttattacata catttaatta      3660
     tattacttct aaaataccaa ctactaatga agtaatacta acaaatattt gtttggtcaa      3720
     aattagttaa ttggaattta ttaaacgttt ttttcctcta ctgtaaaatt tggtgttttg      3780
     tagttacgcc gtttgctaaa tagt                                             3804
//
ID   Sola1-6_LMi repbase;    DNA;    INV; 2467 BP.
XX
AC   .
XX
DT   04-JUN-2014 (Rel. 19.12, Created)
DT   04-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2467
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3296-3296 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(933..1166,1252..1467,1471..1686,1598..2056)
FT                 /product="Sola1-6_LMi_1p"
FT                 /translation="MHELYLKRCEEEQVTAAKVLALQRNIQYRVFRFHVPR
FT                 KDACDHCYRFQNLSEENQEAEKDQHSEHLKRKEAARKQKMKSHFFTKEDWL
FT                 YTTSQYTNCCQKARNYMWHEGIAKRGSIEVASCIFQNYRRLQTAEQLFCSP
FT                 TPVEDGIETSTVPCSSCCANINIPMIQQCFFEPGHSLMESMPDRECCKKLI
FT                 SMILRHCILLSRLLQNKDCIEVVEMEQKDFGFSFGIVYCCPDCYKTKTVLK
FT                 SLKWSRRTLDFDAMQKEKMNNTKIDSEANPVQWLKVTQLQYRKSDVKHIIF
FT                 KHFHHDQFKSLPVSRKSRNSDTIFQLGLKYHGALKLQEEKVKDLLDLCRIR
FT                 IIKEQYHAFYKSLQEAKAGGSDCGPNDCDEVS"
XX
SQ   Sequence 2467 BP; 799 A; 462 C; 494 G; 710 T; 2 other;
     gagtcagagg aacgtatctc caaaaatgcg attttttttt tttttagcgt atgtcctcas        60
     gctaatcagg tccttgttgt gtcaaaacgg cgtatctcta tctcttctcc ttgctaaaat       120
     aagcagctgc gtatctccaa gttgcgagct agttttagag acagatagac gtattggcac       180
     ttacgttctt ctstctcgag tcagggcacc cctattttcg gatcagcaaa acgttcctct       240
     gactgcttgc ttcaagaagt atatttggaa atacgttttt acccggcaga taccattatc       300
     tgcttgattt ggataatata attttgctgc atttgtgcgc tattttccta tgtgctgaaa       360
     gcgaagtatg tgttgtctag cagcgaataa caaagcttgc gacgccaagt agaaaagtcg       420
     catcacatcc tacggctgaa ttattcatct gttcatcaat tcttgaaata cttacgtacg       480
     acgtttcaag ccattgtatt tcccttgcaa aaatcagtaa gtggagaaac gataaacaat       540
     gagtgccctt tgaaagcatc gtcagcgcag tcacattgct tttattgtca cgtcacattt       600
     tgtttagtat cgtgtagtat tcactgggaa gaggttgatg ttaatgtgcg ctctctcgta       660
     gataaaaaat gacttcacga ggaaggagaa tggttgagct atgatgcaaa attaccgcaa       720
     tgaaaggaat tcaacatccg atgaaggtaa gacaacttac tattgatttt tactatgaga       780
     tagtcatccg cggaggcaca gaacgttagt ctgattgact tggctcatat tcatttttat       840
     atattctaga aattacagaa gcagaggaaa agaattactg ccgacagagc actcagcgac       900
     agttcttacc aggagatttg aatatacgaa taatgcacga actgtatttg aaacgttgcg       960
     aagaggaaca ggttactgct gcaaaagtat tggctctaca gagaaatatt caatacagag      1020
     tttttaggtt tcatgtacca agaaaagatg catgcgacca ctgctatcgc tttcaaaatc      1080
     tatctgaaga aaatcaagag gcagagaaag accagcactc agaacaccta aagagaaagg      1140
     aggcagctag aaaacaaaaa atgaaatgaa ggagcaggcc caaacaggag aatgtcattt      1200
     actggagttt gacctagaag ctgtgagata ctgcccacac atagcagcta aagccatttt      1260
     tttacaaaag aagactggct gtatacaacc tcacagtata caaactgttg ccaaaaagct      1320
     agaaattaca tgtggcatga aggtatagct aaacgcggat caattgaagt agcatcatgt      1380
     atatttcaga actacagaag attgcagacg gccgagcagt tgttttgttc tccgacacct      1440
     gtggaggacg gaatcgaaac gtcaacatga gtaccatgtt cttcatgctg tgcaaacatt      1500
     aacattccta tgatacagca atgcttcttt gagcctggcc actctttaat ggagtccatg      1560
     cccgatagag agtgctgcaa aaaattaata tctatgatcc ttcggcattg tatactgctg      1620
     tccagactgc tacaaaacaa agactgtatt gaagtcgttg aaatggagca gaaggacttt      1680
     ggattttgat gctatgcaga aggaaaagat gaataatact aaaattgaca gcgaagcaaa      1740
     tccagtacaa tggcttaaag tgacgcaact tcagtatcgc aaaagtgatg ttaaacacat      1800
     cattttcaaa catttccatc atgaccaatt caaaagtttg ccggtttcca gaaaatccag      1860
     aaattccgat actatcttcc agttgggact gaaataccat ggggcactaa aacttcagga      1920
     agagaaggta aaagacctcc tggacctgtg ccgcatcagg attatcaagg agcagtatca      1980
     cgcattttac aagagtctac aagaagcgaa agctggaggt tcagactgtg gtcccaacga      2040
     ttgtgatgaa gttagctaga aagtgaacat tcattgctga cgttggtacg aaattccatt      2100
     aacatgattt tatttcaact gtaccctatc tgtttcatat gggtaaatta acattttatg      2160
     ttatattttg gcaaacctaa tgcatatctc caaagtgtaa aacctctgtg tagactgatt      2220
     catttagagt cataatgacg tatctcctta gcactatatt aaacaattaa aaatggtaaa      2280
     ccagtaatga aattttttat agaaatacta ccatatgata gattttatgt gtattcatgt      2340
     gtagtgcaga aattttcaat aaagtttgtt ttacgtcact gaaaaacgaa atatacgtct      2400
     taaaatttag tttttcgcct ctcctgtaaa gtagctaaaa tggagttacg ttcctctgat      2460
     cctcaca                                                                2467
//
ID   Sola1-7_AP  repbase;    DNA;    INV; 4912 BP.
XX
AC   ABLF01007348.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-7_AP.
XX
NM   Sola1-7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-4912
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1945..2181,2139..2438,2374..2598,2522..3856,
FT                 3860..4351)
FT                 /product="Sola1-7_AP_1p"
FT                 /translation="MDSRQRSRSLKLVKAAQLNQPIPIINQRYQTRKKMPS
FT                 TESNDQTIILNNLVFEEIMTQKDNVGVEKTIIAENFLLQIVKKNNNCRKLS
FT                 SSNSKIELSYDSSEEWLPPGLKKKLDCLSEISSVSISSNNVLKSNNCSKEL
FT                 FPFLVDADKNVENSDYNVSKSIDHSQETPPRFPGSYHRREANRLTILKKPP
FT                 PDFPVHTIEESNDGIINQNTEVHNSSFDETIQIGKGGLRKSQKSNKRKIIW
FT                 FRKNTSTKPLFVCGKVRNRTKEKLSGSGKTLQPNPCLSAKCQNKCVHKFSE
FT                 DERKDIFTAFWGLNSIQRQRDFIISCAIEIPIKRVRAKHGLSRRSITYEYF
FT                 LSYNSESKKVCLQFLLKTLNVSQIFVRYTLQNKTNIDISPNDRRGKGRPPN
FT                 EVAIENMKNLDHFIQKLPAVPSHYCRASSIKKYLPAEFGNISRLYLVYMDF
FT                 CKKNNHTVMSKSTFKTVFTKKYNIGFHLPKKDKCNLCSKFDNIKLSSDLNE
FT                 EQKIKEEKHLEEKEECRQMFLFDQQLSKAGGDFVCSSFDLQKVLNTPMGPH
FT                 MNLYYSRKYSYYNCSIYESGTCNAYAYLWGEIDGLRGCNEIVSCINQYLCD
FT                 CNKNPKFKSISLYCDSCAGQNKNRAMLFMIMSCLKKQWADLTEVKIVFLLP
FT                 GHSYMPVDSIHATIERFINDKTIWAPSEWPPLIRNSRVNPKSIEVKEQQFN
FT                 FLNWKKNADKVLPKVLKDTEKNIVKTSKIKYINFYRNPLQNDDVILEAFYS
FT                 YNADAKGFIINIPKPTSEALYFPEQAYTSNLSISKEKSKDLLKLCTDGIIP
FT                 GKFHQEYINMTSNELVRDCIQETDEDDEVPPDEDAHKKTNKTKVVKKLKGK
FT                 TKQLLLNTV*"
XX
SQ   Sequence 4912 BP; 1870 A; 654 C; 719 G; 1669 T; 0 other;
     cgatggtgac aatgcaaaag ggcataagcg acacttttta cgaaatctac tttttgtaat        60
     tagggcataa gcgacgtcat tctctatcga ttgctcttac tcatttatcg atacgattat       120
     tttttacgat ataaaacgaa aatttagatt tagacataag cgccaaaaag agtaaattaa       180
     ttaacagata tgtgaataaa tagggaataa gcgacattta gttttaaatg ttagcataag       240
     cgccatagga ttttacttta tggggcctaa gcgacaacag cattattata gttaataata       300
     gattttatat aaaaaaccat tttctgttat ctgttcggtt gacaataaat aataataata       360
     aaaaaataaa aataaaaata atacgtcgta atcttaaaaa aatgcaatat cgtatgaagc       420
     tattaacatt attttattcc aaagagaata tttatttacg tttctattaa aaaataaaat       480
     gtcattattt ataattaatg attataaata ttataatatt attattatca ataatattga       540
     actatgatag actctttgtt ttttgataat aataattatt tttgcgagtg catgttcaga       600
     cgacagacac acgtctcaaa ttcactggag gtaaatatta catttattaa taataggtat       660
     tatttaaaaa ttaagattca ttagggttgt ctctttatta tatctgcaga gtataacaaa       720
     atgtcacgcg atgttgccgg tttcgtaact tgtaaaatag ctacacgtaa tagatacgta       780
     cggatgtttt atactttaaa caacgctact agacattaag tttataaata taataatata       840
     ttgttagggc taggatttct aggcgttcgc atgttttttc cttgagtcaa aattgattga       900
     ttgtcagaat atatgtccac gatttggatt attctcgatt aaataaaaca attttttttt       960
     tgcataatat tttgaacata atgcatataa ttgcataggt agttatctta tgaattataa      1020
     atgaacctct ataatgaatg tgttatttgt cgaaaagccg tatatttact acctatctaa      1080
     aatcttatct tggtcagatg accgtcggtt accgtatggt tgcattatta aacattattt      1140
     ttgtttttca ttaatatggt aagttttagt taataaacat ccattcttcg ttccaaccac      1200
     cggttattcg tgtttcaaaa tttgaaagaa cataataata tcatcacagc aatattaaat      1260
     gtaacaacta ggtacttata attagttatt aattcttaaa aaaaaaaata ataataataa      1320
     ataataaata attagtagat agttactgtt tcaataatta gtttctgatt tttatgtaaa      1380
     aaatattaaa tgttattttg aaataaaaaa aatggttttt gcataatatt ttataatttg      1440
     ttatttctat aaatcctagc cctatatatt atattaaatt tatatcaaat gtaatactat      1500
     aatgatccca caatactatt ttctttctgt ctcgccaact ggcagtaggt atttcactat      1560
     tattatttat gtatactgtc cagatatttt tcaagctagg ctttactttt tgttgaaatt      1620
     atattcattt acgatgggca ttgatctaat aatgttatta taataaaatt ataaaaataa      1680
     attacttgaa tcaattgaat attataatga tatttataat aacttataat ataaaaatca      1740
     taagctaatt aatacatatt tttatgtgga ctggtacgaa aaaccgtgcg tatttacaaa      1800
     gatgtgattt atacttgaag atacacgtca tgttttcatg caaataattc atgtattgga      1860
     tcaatgtcta gcaacgtctt gttttatgaa gacaattagt catttacact tatttttata      1920
     ataggtacta taaggtacat aaaaatggat tctcgtcaac gttctcgtag tttgaagttg      1980
     gtaaaagcag ctcaattaaa ccagcctata cctattatta atcaaagata tcaaactcgg      2040
     aaaaaaatgc catctacaga atctaatgat caaactatta ttttaaacaa tctcgtattt      2100
     gaagaaatta tgacacaaaa agataatgtg ggggttgaaa aaacaataat tgccgaaaac      2160
     tttcttcttc aaatagtaaa atagagttat cttatgactc ttctgaagaa tggttaccac      2220
     caggattgaa aaaaaaatta gattgtcttt ctgaaatatc cagcgtttct attagtagta      2280
     ataatgtttt aaaatctaat aactgctcta aagaattgtt ccctttcctt gttgacgcgg      2340
     ataaaaatgt tgaaaattca gattacaacg taagcaaatc gattgaccat tctcaagaaa      2400
     ccccccccag atttcccggt tcataccata gaagagagta atgatggaat tataaatcaa      2460
     aatacagaag tgcacaacag tagttttgat gaaacaattc agattgggaa aggtggttta      2520
     aggaaaagtc agaaatcgaa caaaagaaaa attatctggt tccggaaaaa cacttcaacc      2580
     aaacccttgt ttgtctgcta agtgtcaaaa taaatgtgta cacaaatttt ctgaggacga      2640
     gagaaaagac atttttacag cattttgggg attaaatagt attcaaagac agcgagattt      2700
     tattatatca tgtgccattg aaatacctat aaaaagagta agagcgaaac atggacttag      2760
     ccgacgtagt attacctatg aatattttct atcttataat tctgaatcga aaaaagtgtg      2820
     cttacaattt ttattgaaaa cattaaatgt atcccaaata tttgtgagat atacgttaca      2880
     aaataaaaca aatattgata tttctcctaa cgatagacgt ggtaagggcc gtccaccaaa      2940
     tgaagtggca attgaaaata tgaaaaatct agatcatttt attcaaaaac tacctgcagt      3000
     accatcgcac tattgtcggg catcaagtat aaaaaaatac ttaccagcag aatttggtaa      3060
     tatatcaaga ttatacttgg tatacatgga tttttgtaag aaaaataacc atacagttat      3120
     gtcgaaaagt actttcaaga cagtatttac gaaaaaatac aatattgggt ttcatcttcc      3180
     taaaaaagat aaatgtaatc tttgttcaaa atttgataat ataaaattat ctagtgactt      3240
     gaatgaagaa caaaaaatta aagaagaaaa acatctagag gaaaaagaag agtgtcggca      3300
     aatgttttta tttgatcaac aattatctaa agcaggcgga gattttgtat gctcaagttt      3360
     tgacctccag aaagtcttaa atacacccat gggtccacac atgaatttat attacagccg      3420
     taaatacagt tattacaatt gttctatata cgagtctggt acatgcaatg cgtatgctta      3480
     tttgtggggt gagattgacg gtttacgtgg ttgcaatgaa attgtgtcgt gtattaatca      3540
     atatttgtgc gattgcaata aaaatccaaa gtttaagtca atttccctgt attgtgattc      3600
     gtgtgcaggc caaaataaaa atcgagctat gttatttatg attatgagtt gtttgaaaaa      3660
     acaatgggcc gatttaaccg aggtaaaaat cgttttctta ctcccgggac atagttatat      3720
     gccagtagat tcaattcatg cgacgatcga acgctttatt aatgataaaa caatttgggc      3780
     acctagtgaa tggcctccac ttataaggaa ctcgagggtt aacccaaagt caatagaggt      3840
     gaaagagcaa caattttaaa acttcctaaa ttggaaaaaa aatgctgata aagtgctgcc      3900
     aaaagtccta aaagatacgg aaaaaaatat tgtaaaaacg tccaaaatta aatatattaa      3960
     tttttacaga aatccattac aaaacgatga cgtgatactt gaagcatttt attcatacaa      4020
     tgccgatgca aaaggattta taataaatat accaaaacca acttcggaag cattatattt      4080
     tccagaacaa gcatatactt caaatctttc gatttctaaa gaaaaatcta aagatttatt      4140
     aaagctgtgt acagatggca ttataccagg taaatttcat caagaatata ttaatatgac      4200
     ttcaaatgaa ttagtaaggg actgtattca agaaactgat gaagatgatg aagtaccacc      4260
     agacgaagat gcccataaga aaacaaataa aacaaaagtt gtgaaaaaat taaaggggaa      4320
     aactaaacag ttgctactaa acactgtatg agatgtacct atgtttttaa aatattacag      4380
     tattgtcatg ttatttctat tttatataat aataatatta ttataaatgt ataatattta      4440
     taattaatta tatgattatt tatacgtaat atttaactaa attcgagtca tgtttttgtt      4500
     ttatttttaa tttttaactg attttatatg attttgtaaa actgcaatat tctggaataa      4560
     ttaaaatttt aaaattcaaa aatatgttaa ttttctatta atatacaggg aagaaaatta      4620
     atagggcata agcaccaaaa tactagaact aaaattacag gtaaggaaaa taatggggca      4680
     taagcgccaa attatataat aatactcaat tcttactgat gtaagtgttt aactaaaaaa      4740
     atgaaagaac aagtgtctta aatagagtac aactcatctt ttttattctt atcatatttt      4800
     tctaaattaa aaatataacc tacaaaatgt aataattgtt aaaaaaaagt tttttggctc      4860
     tcctgaataa tttcaaaaat gtcgcttatg cccttttgca ttgtcaccat cg              4912
//
ID   Sola1-7_LMi repbase;    DNA;    INV; 2708 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.12, Created)
DT   03-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2708
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3297-3297 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(758..799,820..2382)
FT                 /product="Sola1-7_LMi_1p"
FT                 /translation="MWSTFFTWTPETYVVVSTCSQHTFFYGEGSPYGTHYS
FT                 SGTTESRRGTTRLYHLPNEEGVDVKVCKTFFKNILQTSDGRITRVLSHKVQ
FT                 HQTPPIDKRGACPAKNKTPVAKTVAVENFIKRFPAYRSHYARINETVDRKY
FT                 LSPDLSMGKLYDLYKAEHDDPVSYYVFGQIFNTKFNLSFHPPVSDSCRKCD
FT                 LYNIKHAAADTAEEKGKWERERELHQRKAESARTGMNRDAAEGRHQDNDTT
FT                 VIAFDLMKTLPTPVLTTGICYYKRQLWTYCLGIHDLCTKKATMYVWSEGEA
FT                 SRGPQEIGSCLMHYIKHNVQTKRLIMYSDQCGGQNRNIKMALLCQYMALHE
FT                 DFTPEVIHHKFLVSGHSYLPCDQDFGIIAKNRKFHPNIYTPSDWMNVIITA
FT                 RKQQPFTAIPMTRNDFKSTVRLERNIRNRKVSTQNTRVQWFNIQWLQYKAS
FT                 CPHIMFYKYSNDPDVPFADVSFAKRGSIIIETLDMLYPRGRAISALKKTDL
FT                 MSLLQFVPPVYHGYYHNLKTSAQPCGDTIPVNDDTDDEH"
XX
SQ   Sequence 2708 BP; 819 A; 618 C; 621 G; 650 T; 0 other;
     tgaggctatc agcgcaatag tggcctaacc cacatttttt tgaaaaaata agatattcac        60
     acagaacatc actttacgcc taccattacg tcctacaatt gccagacttg tattcggaca       120
     ccatggacga tgtggcagtg tcagatgttg tttatgcacc atgcagtgcc atacaaaacg       180
     gggcgcaata gtggcctatg ccacataggc cactattgcg ccgtgtatcc atagtgagta       240
     ggccggtggg gcagcacaca atacgtcata cagcacgtga cggccggagg aggacgcagc       300
     tgcagtgtag actcacagta ttgtggacga cacatcgctg aacgtcatta gtttgtgtac       360
     tacaaaacga catgtgcagt agccctggtg acgacgtcga agccgcactg cgaggtaagg       420
     atggtgttat gttccctcgt tggactcgtg tgatttaata tggacacgat tcaccagcgt       480
     gcaagtggta cagcggatga gttactgtca tgttagcgag cccaatctac ccagtacatc       540
     aggataccac agccactagt catgaacgta tcggaggggg atcgtagtac tggtgccgta       600
     attgcaccgc aacgaggaag gaaacggtcc ggaatgcaca cctttgggca cggaacattc       660
     gaaagaaaag cgatcgaaag gggaagaata cattaacgtg aagggaaatg tagtgccaag       720
     gaaatgtccc acgctcggag catgcctgtc agaaggaatg tggtcgacat ttttcacctg       780
     gacaccagaa acatatgttt gactcgttct atgcattagg tagtttcgac ttgcagtcag       840
     catacatttt tctatggtga aggtagtccc tacggcacgc actattcctc tggtactaca       900
     gagtcgcgac gaggaaccac acgcctatac catttgccta atgaagaggg agtggacgtg       960
     aaggtgtgta aaacgttctt taagaacatt ttgcagacat cagacggtag gattacaagg      1020
     gttctttcgc acaaagtgca gcaccagacc ccaccaatcg acaagcgagg cgcatgccct      1080
     gctaaaaaca aaacaccagt agcaaagaca gttgcagtag agaacttcat aaaacggttc      1140
     cctgcatatc ggagccatta tgcacgaata aatgaaacag tggatcggaa gtatttgtca      1200
     ccagacctga gtatggggaa gttatacgat ttatataaag ccgagcatga tgatccggtc      1260
     tcgtactacg tatttggtca gatatttaat acaaaattta atctgtcctt tcatccccct      1320
     gtaagtgatt cgtgccgtaa atgtgacctc tataacatca aacatgctgc agccgacacc      1380
     gcggaagaga agggtaaatg ggaacgtgaa agagagttgc atcaacgaaa ggcagagagc      1440
     gcgcggacgg gtatgaatcg cgatgcagca gaagggaggc atcaggacaa cgatacgacc      1500
     gtgattgctt ttgatttgat gaagacttta ccgacaccgg tacttacgac tggtatctgt      1560
     tactacaagc ggcaattgtg gacatactgc cttggaatac acgacctatg caccaagaaa      1620
     gctaccatgt atgtatggag tgagggcgaa gcatcccgag gaccacaaga aattggatcg      1680
     tgtctcatgc attacattaa acataacgtc caaacaaagc gactgattat gtactcggat      1740
     caatgtggcg ggcaaaatcg gaatataaaa atggccttac tgtgtcaata catggctctg      1800
     catgaagact tcacaccaga agtaatccac cataaattcc tagtcagtgg gcactcatac      1860
     ctaccatgtg accaggactt cggtatcatc gctaagaaca ggaaatttca cccaaacata      1920
     tacacaccct ctgactggat gaatgtcatt atcactgcac gaaaacaaca acccttcacc      1980
     gctataccga tgacaaggaa tgatttcaag tccacagtac gtttagagag aaatatacgt      2040
     aaccgtaaag tgtcgacaca aaataccagg gtgcaatggt tcaatattca gtggcttcag      2100
     tataaagcat cctgtcccca tatcatgttt tataagtact ccaatgatcc agatgtcccg      2160
     tttgccgacg tcagttttgc taaacgaggg tcgataataa ttgagactct ggacatgcta      2220
     tatcccaggg gacgcgctat tagcgcgttg aaaaagaccg atttaatgag cttgctgcaa      2280
     tttgtacccc cagtgtacca tggttattac cataacttga agacatctgc acagccttgt      2340
     ggtgacacca tccctgtaaa tgatgatacg gatgatgaac attaatacct catgtgtatc      2400
     ttgtccaatg tttgaataaa gtgtgtaaag caataacggc ctatcccaca tgttttgtgt      2460
     attacagcca agtgcgccga aacaatagtg gcctaaccca cacaaaaaat ggtctaaaaa      2520
     cgctattacg gttaactcca tgtatagccg attaccggac tccatactat gttatgtata      2580
     caacaatcat tgctatacgc cgcaatcact gccttacaca tcaattctga aaacgtcaat      2640
     atcttccagt ggccattccc acaaaccagt gtgctgtggg ttaggccact atagcgctga      2700
     tagcctca                                                               2708
//
ID   Sola1-8_AP  repbase;    DNA;    INV; 3562 BP.
XX
AC   ABLF01000511.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-8_AP.
XX
NM   Sola1-8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3562
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1451..2461,2465..2854,2797..3159)
FT                 /product="Sola1-8_AP_1p"
FT                 /translation="MARKIKQLGSCRRKCNELFKDNDRKIIFEEYWSMGDY
FT                 AKRVSYVMALMNLKQKMTERKKVDISEKQRNKTFSREYFLRINGEKKKICC
FT                 SCFLSTLGETKGFLNTVVAKCISSKSGIPQNDLRGKREPHNKLSEQDLKNA
FT                 KDHILSIPSYESHYSRRDTSKRYLPSHFTLSSLYEQYKQTTDTPIGRPKYE
FT                 AIFHDLNLSIKKPKKDTCNKCDTFHMRISLADGDEKVNLQIAFRDHLEQAD
FT                 IGYTSKAEDKEEAKTDDKKEKKVLTFDLQQCLPTPHLETNVVFYKRQLWTY
FT                 NLTVHDCSDNPAYCFMWSEVDGGRGANQIASCVAKHLYTWICVDLLHGLPT
FT                 KHVTLYSDTCGGQNKNSHMVAMFMSVIRYHNILEVIDHKFLLAGHTHMECD
FT                 SDHALIEKKKKTSKTIIYHPHDWMQLVRQTGKKNPFIVTSMMHSDFLNYSE
FT                 LLKNQLQMKKKIVMVKNLYGKIKSTTDEKKNSNGEKFVWKNIKWLRFKKTE
FT                 LGILYYKETLDIDAPFKSLSLCSKGRSHYQLTPPLCYNRPVPIAEKKKKDL
FT                 LDLLPMIPNVFHDFCKNLPTDATLKETYPNNETDTEEENS*"
XX
SQ   Sequence 3562 BP; 1365 A; 482 C; 559 G; 1156 T; 0 other;
     cgatggtgct cgggaaaaac tggctaagta taaaatttgc gaaaattagg ttatgtcata        60
     tctagataca gaagaatcag acggtgtttt gggtaaaatg gtctaagtca tacaccgatt       120
     ttaccagttg ttatacactt atgaaaaata gaacatttca caaaattaat tttgtgtttg       180
     agaaaaacca gttatatgac ttagacgatt ttgtacatac tattatcatt gcgaaatttg       240
     gcctatgtca acttagacaa ctttacacca aaataatgat atgtgataaa gtggctaagt       300
     gacttggcgg tgtgtagaca taattccttg tagacatagt gaatattacc cataatttaa       360
     taaaacaact attccccatt tttgtaacat ctctgactag agagccttta ttatctagga       420
     tctctatctg tgactatcaa taatcaataa tatgtattaa aatcatagac cttatactaa       480
     tataaggtat atgattaaaa tatattaata atcttatcat agctatattt tatcaatcat       540
     aaaaatatta tgattgtaca taatatttta attattttat tagtgttatt ggtaggcagt       600
     agctattata caaacgttat actaatttat tacgttataa caataaaact attattactg       660
     atctcgtaca tgattgtatt tattattttg gtaaaatatc gtatacaata tagttataat       720
     gtttaaatcc agaacagcca aacttattgc aatgtgttat tcagataaca ataaaaacaa       780
     ctcaggtaag caaatgtgtt aatgcaagat cactgttttt ttcctaaatg ttgtagttta       840
     tttatgtatt aaaataaatg tttagatgaa gaaaatacat cagttgagag caataacgac       900
     tctggtgact catatagacc accacttgtt cgatcaaaga gttctaccag tgttgcatca       960
     aacattgtaa gtacacttag gacaatgcaa tataatagat atatttaatt ttatttaata      1020
     actttttggg tttgtgtaaa ttatcaattt aaactaagaa tttaattttt aatatatgta      1080
     actattgtac attgcagaga taaactaact tgtatagtgt aggtacatac atgtcagtta      1140
     ccattgtaac aatacattac ccacaaactc ataaactatt aataatttta tgttgtatat      1200
     tatcataaat attattatta agtaaaacaa taattttttt tacaggaaga caatagtaat      1260
     tatttagcca atatggatgg aaataataat tctcctttta caactgattc atcaactgtt      1320
     gatggtaatg ctggtaaaaa aaaaaaagga aaattagagt gtaaaaggac aatccagaca      1380
     agtaaggact gatagatgta ataaacgtaa taaaggagaa gagtacaaaa cgggaaaagg      1440
     aaaggtgata atggcaagaa aaataaaaca gttgggttca tgtagaagaa agtgtaatga      1500
     actgtttaag gataatgata gaaaaattat ttttgaagaa tattggagta tgggagatta      1560
     tgcaaagaga gtttcttatg taatggccct tatgaatcta aaacaaaaaa tgactgaaag      1620
     aaaaaaagtg gatatttctg aaaagcaaag aaataagaca ttttctagag agtacttctt      1680
     gcgtattaat ggagaaaaga aaaaaatttg ttgttcttgt ttcttaagta ctttaggtga      1740
     aacaaaaggg tttctcaata cagtagtggc aaagtgcatt tcatcaaaat caggtatacc      1800
     tcaaaatgat ttgagaggta aaagagaacc acacaacaag ctgtctgagc aagatttaaa      1860
     aaatgctaag gatcatatac taagtattcc ttcatatgaa agtcactatt ctaggcgtga      1920
     tactagcaaa agataccttc catcacattt tacactgtca agtttatatg aacagtataa      1980
     acaaacaaca gatacaccaa tcggccgtcc aaaatatgaa gccattttcc atgatttaaa      2040
     cctgtctata aaaaaaccaa aaaaggacac ttgtaataaa tgtgatactt tccatatgcg      2100
     cataagtttg gcagatggag atgaaaaagt aaatttgcag atagcgttta gggatcattt      2160
     agaacaagct gacatcggat atacttcaaa agcagaagat aaagaagaag ctaaaactga      2220
     tgacaaaaaa gaaaaaaaag tactgacatt tgatttacaa caatgccttc ctacgccaca      2280
     tcttgaaaca aatgttgttt tctataaacg tcagttgtgg acgtacaacc tgaccgttca      2340
     tgattgttca gacaatccag cttattgttt tatgtggtct gaggtcgatg gaggaagggg      2400
     tgctaaccag atagcttctt gtgttgctaa acatctgtac acatggattt gtgtggattt      2460
     gtgattacat ggattgccta ccaaacatgt aacactttac tcagatacct gtggggggca      2520
     aaataaaaat tcccacatgg ttgctatgtt tatgtcagtt ataagatatc ataatatact      2580
     agaagttata gatcataagt ttctattagc aggtcacact catatggaat gtgattctga      2640
     ccacgcacta attgaaaaaa aaaaaaaaac aagtaagacc ataatatacc atccacacga      2700
     ttggatgcaa ctagtcagac agacaggaaa aaaaaatcca ttcattgtaa cctccatgat      2760
     gcatagtgat tttcttaact actcagaatt gcttaaaaat caactacaga tgaaaaaaaa      2820
     aatagtaatg gtgaaaaatt tgtatggaaa aatataaaat ggttgagatt taaaaaaact      2880
     gaactaggaa ttttatacta taaggaaaca ttagatatag atgcaccatt caaatcacta      2940
     tcactctgct caaaaggaag aagccattat caacttacac caccattgtg ttataataga      3000
     cctgttccga ttgcagagaa gaagaaaaaa gatcttttgg acttacttcc aatgatacca      3060
     aatgtttttc atgacttttg caaaaattta ccaactgatg ctacactaaa agaaacatac      3120
     ccaaacaatg agactgatac agaggaagaa aactcttaaa gcaatggact gaaataattt      3180
     taaccattta tgtataagaa ttaaaagttt tattattaag tttattttgt ttttgtttat      3240
     aatttactaa aaaactatgt actgtatatt tatacatttt tttctataat aataggtaat      3300
     aactatctaa gtcaaaaaat attttgtgca atataggcta agtctgccta attaagtcaa      3360
     ataaattatt ttgttgtatt aattataatt ttttattctg ttttaatata atttgttgtt      3420
     ttttaaaggt tatagaaaac attagtcaat gttatgaatg aaaataaagg ttatcttatc      3480
     tcttttttgt aattgatttt ttatttttga atattccaaa ttccaaattt tagacttagc      3540
     aagtttttcc cgagcaccat cg                                               3562
//
ID   Sola1-8_LMi repbase;    DNA;    INV; 2090 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.12, Created)
DT   03-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2090
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3298-3298 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(460..618,676..1170,1170..1712)
FT                 /product="Sola1-8_LMi_1p"
FT                 /translation="MYSSHYSRAKAPNRKYLHSNLSVAMMYKMYEIFCHED
FT                 KKVKVFTDIYSRQSLTKLYIVRLMKKRQLKLKKNSSQEGRSSKRRQKEMQE
FT                 LKDDNHVAICIDLQKMMPTPHVTNSKAFYMRQLWTYNLNIHNLTSGTAHMF
FT                 MWHEGQASRGCQEIASCLLKYIQSLPHTVKHISAFSDNCGGQNKSHLIVKF
FT                 WCYIVRNTQIETVDHYFLISGHSYNECEIVELKRKKNQRDIYIPEDWMNLA
FT                 ATASRKFVVTKMTDEDFIDLQPLNRYFRNTVPGIRGMQVLHFEKANPNTLF
FT                 YKTSSAEGILPYQKLPMKKQRTGRMPKQLPSLQSIAVKPKLKYKKYEDLME
FT                 LLQFVPPIHHQFYKSLSHETKAGAPFSPSTHVDDDYDVATDLGNNIYDTDD
FT                 DFDTC"
XX
SQ   Sequence 2090 BP; 706 A; 395 C; 408 G; 581 T; 0 other;
     tgaggacccc agaggtcaag ggtctaagtg acatttttga aaaaaaagag ttagtacagg        60
     aatgggacgt gatactacta atctattcgc tggtaaagag tcctagtgat tttattgaca       120
     gtatgtgcca tctagcgtga tgccccttga ctgcttggtt gtttgtagtt gcgctttggc       180
     gcacaagggt ccaatatcac taggacccct ttaccaccaa acagtgcaat agattccgcg       240
     cgtggaagca gatatcagtg ctattgtaaa agcgtgtgca aaaccttttt tctaaaaacg       300
     cttgacatat ctaacaaaag gataagaaac gttatcatta acaaaaaatc aaacccatct       360
     ggtatttccc cacgtgacaa acggggaagg aaggagcctc caaataaaat tccagcaaac       420
     agaattgcaa taatcaagga gcatataaga aaattcccga tgtactcaag tcattatagt       480
     agagcaaaag ctccaaatcg aaagtactta cattcaaact taagtgtggc aatgatgtat       540
     aaaatgtatg aaatattttg ccacgaagac aaaaaagtga aagtttttac agacatatat       600
     tcaagacaga gtttaaccta agctttcaca ggcctcatac cgatacctgt gtaacttgtg       660
     acaggttgca gatgaaaatt gtacatagta cgcctgatga aaaaaaggca gctgaagttg       720
     aaaaagaatt catctcagga aggcagaagc agcaaaagaa ggcaaaagga aatgcaggaa       780
     ttaaaggacg acaaccatgt tgcaatatgc attgatcttc aaaagatgat gccgacacca       840
     catgtcacga actcgaaagc tttctatatg cgacagttgt ggacatacaa cctcaatatt       900
     cacaacttaa ccagtggtac tgcccatatg tttatgtggc atgaaggaca ggcaagtagg       960
     ggttgccagg agatagcatc gtgcctgctg aagtatatcc agagtcttcc tcacactgtg      1020
     aagcacatct cagcctttag tgacaactgt ggaggccaga acaagagcca tctaatagta      1080
     aagttttggt gttatattgt taggaacacc caaattgaaa cagttgatca ctatttcctc      1140
     atttctggac attcatacaa tgaatgtgaa tagttgaact taaaagaaag aagaatcaac      1200
     gtgacattta tataccggaa gactggatga atctggctgc cacagcaagt cgaaaatttg      1260
     ttgttactaa aatgacggat gaagacttca ttgatcttca accactaaac cggtacttta      1320
     ggaacactgt gccagggata agaggaatgc aggtacttca ttttgagaag gcaaacccaa      1380
     ataccctttt ttataagaca tcatcagctg aaggtattct gccttatcag aaactgccaa      1440
     tgaaaaaaca acgaacggga agaatgccta aacaacttcc cagtcttcaa tccattgctg      1500
     tgaagccaaa gctaaaatac aagaaatatg aagacctgat ggaacttctg caatttgtgc      1560
     caccgataca ccaccaattt tataaaagtt tatcccatga aacaaaggct ggtgcaccat      1620
     tttctcctag tactcatgtg gatgatgatt atgatgtcgc tactgacctg ggtaacaaca      1680
     tctatgacac agatgatgat tttgatacat gttgataagt gttaaactcg aaatttttca      1740
     ttttgtaaat cagtcagtac actattgctg caatactgta tcctgttata acaataaatg      1800
     tttgttatgt tgattatgta ctctgagcgt tatcatttta ttctattttc agtaagaggt      1860
     aaaggggtct aagtgcggat tgtacattat ttatacatat caactataaa ccggatgtta      1920
     tacttattta ttatcattgg aaataaaaag ctaaggaccc gagtattcgt ctgaaatttt      1980
     ctaaacggtg aaattctcat tttccctctt acgaaaactg ttaactttga cttcagtttt      2040
     ctcgaaacta tgattttgtc acttagaccc cttgacctct ggggtcctca                 2090
//
ID   Sola1-9_AP  repbase;    DNA;    INV; 3907 BP.
XX
AC   ABLF01024328.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola1 DNA transposons from Acyrthosiphon pisum.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-9_AP.
XX
NM   Sola1-9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3907
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(455..637,592..975,979..2340,2328..2828)
FT                 /product="Sola1-9_AP_1p"
FT                 /translation="MELHRSKRASRLVNLVQYNVLPVNTPRNYVVDINLEG
FT                 KKQYKCLDKYLLFFSVIIVSTQSNIFIVFFSYYSIYTIKLIKLFFKLEIQN
FT                 ENIHLRNEEDLVDDPVEDNDIFDDSDEDPTFDPHCDILELIDEIQKENIHL
FT                 PNEEDFVDDPVEDNDIFDDSDGDPTFDPHCNIVEPSDEDEQVSTHSSEINN
FT                 NGGRPKKGRKRKHIHQSRSNIKVLKNSNLGYYNQKNIKVIPKKFKDYDCKC
FT                 PMKCPQKIPLNKRKEHFENFWKLGEYTAQNAYIATLVHELPVKRRYGSSNN
FT                 SNFNKQFTRKYNLDNTQVCRKMFCETTNISTFRVNTALKKMHGRSPILDQR
FT                 GLKNGGLNKISEEKLKTIKDQINKIPKYTSHYCREQSNFQCLPPEMTIEKM
FT                 YLAYREEENEPVSFSTYKRYFYNCFNLKFKNLKKDTCNTCDSLKVQINNEQ
FT                 NVMKKEELNIKHTEHLNLAENAQTLLKIDLDNAKQNEHFQCLTYYMEKTLP
FT                 LPRLPTNIIFYKRQLWLYNTGIFSGKDNQGYCYVWLEGQAERGAQEVGSCL
FT                 RKHIKNNLNNSIKELVLWSDSFGGQNRNIKIVLMMKTLFNNTELETITLKY
FT                 LYPGHSFLPNDRNFSDIESALKHQQRLYTPDDYIHIMKTCKKKILKKNPLT
FT                 VIKMNKEDFVSTEILEKKITNRKVSESGDKMNWLAIRQIKLYRSNPLSIFM
FT                 NNTLSVDNFVEINIKKRCRGRQSTTPFPAEILLTQLWPDGKEINKLQLEDI
FT                 KSMMHLIPADAHAFYSNLIGRNSEIDEDVGGFNELLDFEMETNQIIMLTTS
FT                 QVVTLLV*"
XX
SQ   Sequence 3907 BP; 1488 A; 494 C; 549 G; 1376 T; 0 other;
     aagttatgca gaaaacaacc aaccctcaaa aacataaata ttgagctatg tatactacta        60
     gattggaaat tttatattac gcattttact aaatgcaacc aacccacaag tcaataggag       120
     ctctatctat caatgttcaa agatggaact gaatgtgtta tcttacaaaa ataatattgc       180
     acaatacatc catgccacat ggttttgtaa tggtggttat actgtgaaaa acgtactatc       240
     acacatcaat ccaagcagct tggttgtttt ctgcagattt gataaagata taattttaca       300
     ttatcatgaa aaattaattt gtacttcgtt ggcattttta tttattttat aattttatat       360
     aatatattgt tattcgtttt aacttcatat aagtaaattt aattttgtta gttaaacatt       420
     acgtaatatg cgtcttagtc gttaagtagt ggttatggaa ttacatagaa gtaagagggc       480
     cagtcgtttg gtaaatctag ttcaatataa tgtattgcct gtgaatacgc cgagaaatta       540
     tgtggtagat attaatttag aaggtaagaa acaatataaa tgtcttgata aatatttatt       600
     gtttttttca gttattatag tatctacaca atcaaattaa taaaactttt ctttaaatta       660
     gaaattcaga acgaaaatat acatttgcgt aatgaagaag accttgttga tgaccctgtt       720
     gaagacaacg atatttttga tgattctgac gaagatccaa cttttgatcc gcattgtgat       780
     attttagaac taattgatga aattcagaaa gaaaatatac atttgcctaa tgaagaagac       840
     tttgttgatg acccagttga agacaacgac atttttgatg attcggatgg agatccaact       900
     tttgatccac attgtaatat tgtagaacca agtgatgaag atgaacaagt gagtacacat       960
     tcttcagaaa taaattaaaa taatggtggc aggccaaaaa aaggcagaaa aagaaaacat      1020
     atacatcaat ctcgctcaaa cataaaagtt ttaaagaatt caaacttagg ctattataat      1080
     caaaaaaata taaaagttat ccccaaaaaa tttaaagatt atgattgtaa atgccctatg      1140
     aaatgtccac aaaagattcc actaaacaaa aggaaagaac attttgaaaa tttttggaaa      1200
     ctaggcgaat atactgctca aaatgcatac attgccactt tagttcatga gttaccagta      1260
     aaaagaaggt atggttctag caataattcc aatttcaata agcagttcac aagaaaatat      1320
     aatttagata atactcaagt gtgtcgcaaa atgttttgtg aaacaacaaa tatatctaca      1380
     tttagagtta atactgccct gaaaaaaatg catggtaggt cacctatcct tgatcaaaga      1440
     ggattaaaaa atgggggcct aaataaaatt tctgaagaaa aactcaaaac tataaaagat      1500
     caaataaaca agattccaaa atacacatcg cattattgca gagaacaatc aaattttcaa      1560
     tgtttacctc cagaaatgac tattgaaaaa atgtatttag cttatagaga agaagaaaat      1620
     gaacctgtaa gcttttcaac ttataaacga tatttttata attgttttaa tttaaaattt      1680
     aagaacctta aaaaagacac ctgcaatacc tgtgattcat taaaagttca aattaataat      1740
     gaacaaaatg tgatgaaaaa ggaagagtta aacatcaaac atacagagca cttgaattta      1800
     gcagaaaatg cacagacctt attaaaaata gacttagata atgcaaaaca aaatgaacac      1860
     tttcaatgtt taacatatta tatggaaaaa actttaccac tgcctagatt acctacaaat      1920
     atcatatttt ataagagaca gctttggctt tataataccg gaatcttcag tggtaaggat      1980
     aatcaaggct attgttatgt atggctcgaa ggtcaagctg aaaggggtgc tcaggaagtt      2040
     ggttcatgtt taagaaaaca cataaaaaat aatttaaata attctattaa agagctagtt      2100
     ttgtggtcag attcttttgg agggcaaaat agaaatatta aaatagtttt aatgatgaaa      2160
     acacttttta ataacaccga actcgaaaca ataacactga aatatttata tcctggtcat      2220
     agttttttac ctaatgatag aaattttagt gacatagagt cagcactgaa gcatcaacag      2280
     agactttaca ctcctgatga ttacatacat attatgaaga cttgtaaaaa aaaaatcctc      2340
     taacagttat taaaatgaac aaggaagact ttgtaagcac tgaaatttta gaaaaaaaaa      2400
     taactaatag aaaagtatca gagagtggtg ataaaatgaa ttggcttgct attagacaaa      2460
     taaaattata tcgtagtaat ccattatcta tttttatgaa taatacatta tcagttgaca      2520
     actttgtaga aataaatata aaaaagcgtt gtcgaggacg acaatccaca accccctttc      2580
     cagcggaaat attattaacc cagttatggc ctgatggcaa agaaattaac aaattacaac      2640
     ttgaagacat aaaatccatg atgcatctaa ttccggcaga tgcacatgca ttttattcta      2700
     atttaattgg aagaaatagt gagattgatg aagatgtggg tggatttaat gaattattgg      2760
     attttgaaat ggaaactaat caaattatta tgctaactac tagtcaagtt gttactttac      2820
     tagtatgatt attttattat cttttttaag aattttataa tattgtttgt tttctattta      2880
     attttttttt tttaagattc aaaaagtggt ttattattaa ttattttgat gttactaatg      2940
     aagtagtttt tttaatatta tcaatatttt actatccttt ttaggatttt tttactatta      3000
     taactcaaga acagatttca tttttatgtt aactactagt caagtaagtt gttacattac      3060
     tattagatac attaactcaa aagactgaga taattactta atgttgaagt aaagtttata      3120
     aatattatat tttaccatcc tatttagaaa ttgtatacat tttatgactc aagaacagat      3180
     ttattatgaa ttattataat gttaactact agtcaagttg ttactttact agtatgatta      3240
     ttttattatc ttttttaaga attttataat attgtttttt tattttattt ttttttttaa      3300
     gattcaaaaa gtggtttatt accttaatta ttttgatgtt gctaatcaaa tagtttttta      3360
     ctattatcaa tattttacta tcctttttag gaattgttta ctattataac tctagaacag      3420
     gtttaattat tatgttaact actagtcaag tagttgttac attactttga ttagtatttt      3480
     tttattgttt ttttttaatt ttataataat ttgactcaaa agactgagat aataaatatt      3540
     taatgttttt tgttgtaata tacatcttat gttttaatca cataaaatgt ttttttttct      3600
     tatttaagta taataatatt attaaagttt tcattttaaa aacaaccaac caacataaag      3660
     caaccatgcc acatttttac attaatcata aaacaaccaa ccaacataag tcttaaaata      3720
     atggtgagta ttaatttgta tcaggatttt attggtaagt cattgaaata catacatcaa      3780
     attaataaga tatattggtt ttaggtcata tgaggtgcta accaatttaa aattaatatt      3840
     tttctaaaac ttgaattatc tccaaataga acatgtgtgg gatggttgct ttctgtataa      3900
     cgccgtt                                                                3907
//
ID   Sola1-9_LMi repbase;    DNA;    INV; 2673 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 19.12, Created)
DT   03-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Sola1-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2673
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3299-3299 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           374..2032
FT                 /product="Sola1-9_LMi_1p"
FT                 /translation="MSTLGNEDDGIPQNEPKKRRKTGRIADVGKKLRLSSH
FT                 EIGESCKCSRLKCFDVTTEAERAEILRKFNSLESHNDQNAYLAGLITVLCV
FT                 NRRRPRQTEENAKLRDAAFAYRVRIPVGCDNKCDVPVCAKAFCAIHGITKN
FT                 KLEYIQKSLKLTGSAPQDKRGNHTHLHRKLDESTRSLVYSHISSFKGRQSH
FT                 YSLKDSRKTYLPEDLNIKRMFLMFKELYPTVDVSYETYRCIMNTNFNISFG
FT                 YPRSDTCTHCDEFSAKLKALSPEKDKEEIKKLTTMNVLHKRKAETFYQRKR
FT                 DARHKAMKTKKMEAICMDFAKNVSLPNITTNDVYYKRQLSMYSFNIHILST
FT                 GQSVFYEYHEGIAKKGPNEVASFLFHFVMNYLDNNVEELQVFCDSAGGQNK
FT                 NFTIFRFLHYLVHNNIHGLRNIKITFPERGHSYMECDRNVGLWDLKRRMET
FT                 PEDFMSMIENSRMKPSPFIVEKVSQEMVYDWKYFLNQKYVPKCPFKIQPVK
FT                 EIETSSIHPRLMNWRDTYNGHMVSSIIRKPDRDPSNQKAGEFELPSLSYTG
FT                 NCNMTY"
XX
SQ   Sequence 2673 BP; 879 A; 479 C; 525 G; 789 T; 1 other;
     tgaagggtcc agggaaaaaa ccaggtaagt ccatttttct ctcgaaatga gttagagatg        60
     ccattcgatt ctccatcgat agggctatct gttagcagca tgaaacaggg cataaaccag       120
     cttagtcacg gctttatttg cccttaaagt tttggcgtac aggaaaagaa gcaggtaagt       180
     ccacagawtc agcgaaaaaa ccaggtaagt ccactgcatc tcaacagatg gccgtgcgat       240
     caccagactt tcgcgccatt atatctttga catttcattg ttgcaggtgt tccttttttt       300
     acattgtgtt tctgagtgtg atttgttatt gcggcactgt ttaataaatc gttctgtgct       360
     gtgctgtgcc gtgatgtcga cattaggaaa tgaagacgat ggaattccac aaaatgaacc       420
     taagaagcgg aggaaaactg gccgaattgc tgatgttggt aagaaattaa ggctaagttc       480
     acatgaaatc ggggagtcgt gcaaatgttc ccgtcttaaa tgctttgatg tcaccactga       540
     agcagaaaga gctgaaatac tacgcaaatt caacagtcta gaatcacaca atgatcagaa       600
     tgcgtattta gcaggtttaa taacagttct gtgtgtcaac agaaggcgac cacgtcagac       660
     agaagaaaac gcgaaattac gagatgctgc atttgcatac agagtcagaa ttcccgtagg       720
     gtgtgacaat aagtgtgatg taccagtttg tgcaaaagcg ttttgtgcaa tacatggtat       780
     cacaaaaaac aaattggaat atatacagaa gagcttgaaa ctaactggtt ctgcaccgca       840
     agacaagagg ggtaatcaca cacatcttca caggaagctt gacgaatcta caagatcgtt       900
     ggtatacagt catataagca gttttaaagg tcgacaaagc cattacagct taaaagattc       960
     aagaaagact tatttgcctg aagatttgaa tatcaagaga atgtttctga tgtttaagga      1020
     actttatcct actgttgatg tttcctatga aacctataga tgcattatga acacgaattt      1080
     caacatatcc ttcggatacc cacgtagtga cacgtgcact cattgtgatg aattctcagc      1140
     caaacttaaa gcactctccc cagagaaaga taaagaagaa attaagaagt taacaaccat      1200
     gaatgtcctt cacaaaagaa aagccgaaac attctaccaa cgcaaaagag atgcaaggca      1260
     taaagctatg aaaaccaaga agatggaagc aatttgtatg gattttgcta aaaatgtgtc      1320
     gttaccaaac ataactacga acgatgtgta ttataagcgt caattatcaa tgtattcttt      1380
     caacatccac attctctcca cggggcagtc agttttctat gagtaccacg aaggtattgc      1440
     caagaaaggt cctaacgagg tagcgtcttt cctttttcat ttcgttatga actacctcga      1500
     taacaatgtt gaagagcttc aagtgttctg tgattctgct ggagggcaaa acaagaattt      1560
     cacaattttc cgcttcttgc actatctcgt tcataataac attcatggat tgagaaatat      1620
     caagatcaca tttccagaac gaggtcattc ctacatggaa tgtgatagga atgttggtct      1680
     gtgggatttg aaacgaagga tggaaacccc agaggatttc atgagtatga ttgaaaattc      1740
     gagaatgaaa ccatcaccat tcattgtgga gaaagtttct caggaaatgg tatatgattg      1800
     gaaatacttc ttaaatcaga aatatgtacc gaaatgtcca tttaagatcc aaccagtgaa      1860
     ggaaattgag acttcgtcca ttcaccctcg cctgatgaac tggagagaca cgtataatgg      1920
     tcacatggta tccagcatca taaggaagcc tgacagagat ccatcaaatc agaaggctgg      1980
     agagttcgag ctaccctctt tgtcctacac aggtaattgc aacatgactt attaatgcta      2040
     cccttaaaac ttttatttaa tgttgcttat gtgtaaaaat atgtaacaaa attctccatt      2100
     gtctgcaggt cacttacgta tttctagagc aaagtacaat gatttaatga gcctcatgaa      2160
     gttctgtggt ccagcagcag tggaattttt ccattcattg cctcatgatt gataacttgg      2220
     aacagatctg tgagtttcca taataataat aataaaatta taattgatga taatagcatt      2280
     agaaatgata attataatat tataaacaat aagaataatg ttagaaatta caataataat      2340
     aataaatgaa atgacattaa aacattcgtt catacaaggg aaaggaatag ctgactcata      2400
     tgctccgttc tctttctgtt tcagggactt acctggtttc tttcctgaaa agtttgtagt      2460
     ttgagtaaat tttttaattt attttcgtgc tatcaatgtt gaacaccata gaaacggtct      2520
     cattttgttc tctatactca ggacttcaat gttttatatg gtttgaaaac attagtttgt      2580
     atgagatgta cttattgcgt tttaaaatta aaaaatcgtt ttctgagttt cattgaaatt      2640
     gtgacttacc tggttctttc cctggaccct tca                                   2673
//
ID   Sola1-N10_AAe repbase;    DNA;    INV; 259 BP.
XX
AC   .
XX
DT   09-SEP-2011 (Rel. 17.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 4)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N10_AAe.
XX
NM   Sola1-N10_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-259
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2475-2475 (2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 259 BP; 74 A; 61 C; 55 G; 69 T; 0 other;
     tcaagcgtgt gctagaataa gggcgtaagt cgcatgatcg atttctcttc atcgatcctc        60
     tcttctgtga ataaaggtga caagacgcaa gtttgtcagc attttttcac ctcaggacgc       120
     aagattgcat cgctgcctag cgtcctgaag tgaaaaaatg ctaacaaacc cgcatcttgt       180
     cacctttatt cacagaagag aggatcgatg aagagaaatc gatcatgcga cttacgccct       240
     tattctagca cacgcttga                                                    259
//
ID   Sola1-N11_AAe repbase;    DNA;    INV; 422 BP.
XX
AC   .
XX
DT   03-DEC-2018 (Rel. 26.01, Created)
DT   03-DEC-2018 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N11_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-422
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-422
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 151-151 (2021).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 422 BP; 132 A; 75 C; 85 G; 130 T; 0 other;
     ctgccgtgaa tcgcaagtca gtcccatctg taaaaagtag gcattgagaa aatgggctgt        60
     gaagtttcca aactcgtttt ccatacgaat attcaaaaaa ttccagagga ttggaacatg       120
     ttccaatctt aatgaaactt tcacaacttg ctttttacta cgatatcttt ccgagaaaaa       180
     tataaagatg atcgaaacac ggttcatttt tgtgttacac ggtgcggaaa tctgtagtgg       240
     gactgacatg cggttacttt tcattatggg acaatttgac ttgctgtttt ttcctaattt       300
     ttccgaacaa ataatataat ctcattagtg cagctgaaag agcattggaa gatatgttga       360
     aaactgagct caactcaatt ttgacgaaaa tgcagatggg actgacttgc gattcacggc       420
     ag                                                                      422
//
ID   Sola1-N1B_CQ repbase;    DNA;    INV; 1019 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A DNA transposon family from Culex quinquefasciatus - consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1B_CQ.
XX
NM   Sola1-N1B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1019
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 95-95 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >83%
CC   identity. 32 bp TIRs. 4-bp TSDs. ~77% identical to Sola1-N1_CQ.
XX
SQ   Sequence 1019 BP; 359 A; 166 C; 157 G; 337 T; 0 other;
     ctgccgctct aatctagtcc gtcccatatg taaaaagtga gtgctgagat aacgctgtga        60
     gaagcccaaa aaaagtttca ccatttttct cattctaaac caacattttc tatataattt       120
     tttatacagt tatttcgata tcagtctaaa aaacaccact atcataaatt tgatttaaaa       180
     aactaacaat ttgaaggtaa atttgtgaaa ttttcaacaa gagaccgact tgactttatt       240
     tgtccataaa taaaggcagg tcagtcatgg tatcaaggta ggcttgaaca tttacaccag       300
     aggttcaacc tgattcaact gtcatttcca ggtttgtttt ggtagttttc caagtaatta       360
     atggtcacca aatgatacaa atttgtttat ttcagatttt tatagaattc caagatacaa       420
     aaatatgacc agcaacgaca ccagaaattt tttaaataat acagaggcaa atgacatatg       480
     aatgcaaatc tcaactgctt aaccctgaaa ttaatttcaa aaaatccgct tttcggaggt       540
     ggaatctttt ccagaaccag gatcaagcct attcattcaa gacaaaatag aactaattgt       600
     atggtgtaga tattagccat aacggtatgc attttatttt ttctattcgt ggttttccct       660
     tgaagaagaa aaaaagcaaa aaggtttgga ttatttcgtt tttaatattc aaatatttct       720
     tcagaaatga acagataatg atattttcaa gctttacgta ttcataaaga catactctgt       780
     aaaatttaaa caattctgca tccactcaaa cgatttgcga gacatttcta tatgaggaac       840
     tgacttgcct ttattttgca tatgggacag cacgaaagtc atatttattt tggaattttt       900
     agaacaaaca ttacttgttt attcaatagg ctaaaataac atgtaaaaac aagacttttg       960
     tgaagtttat ctcatttttg acaaaaatac atatgggacg gactagattg gagcggcag       1019
//
ID   Sola1-N1B_PPo repbase;    DNA;    INV; 395 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1B_PPo.
XX
NM   Sola1-N1B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-395
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2751-2751 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 2bp TSDs.
XX
SQ   Sequence 395 BP; 124 A; 62 C; 71 G; 138 T; 0 other;
     tatatcgacg ggtgaaaggc tatttgtttc aaccgccatt ttaggcgata ttgacttata        60
     tatattcaga atcagcgaat ttttctgcgt cgtttgaacc gggtttcata aagatcagag       120
     cacttttgtg gcgcttgaaa caatcaaaat gtaggtgtcg tttttaagac gtatgaagcg       180
     ccaaaaatca gcagttttaa tagtcagtgg attgaatgaa gtatgcagaa ttatagtaat       240
     tttaatctag aaccggtctg aaaatctttc aattgaaatt attttcagga tttgctttta       300
     tgtttttttt ttctaaaaat gaaaacttta aatggctctc ctgaacattt aacctaatgg       360
     cgcttaaaac aaatagcctt tcacccatcg atata                                  395
//
ID   Sola1-N1_AAe repbase;    DNA;    INV; 3137 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1_AAe.
XX
NM   Sola1-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3137
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1291-1291 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 4-bp TSDs. TIRs are 32 bp long.
CC   This non-autonomous Sola1 element includes a CR1-like sequence.
XX
SQ   Sequence 3137 BP; 1005 A; 575 C; 561 G; 996 T; 0 other;
     ctgcccataa aagcataact gtcccatatg gatttcctcc aaaaaatttt ttttggcggg        60
     ctacgcatat ttgtatgtat attttcatat gcacacataa aattgatcag tttgttcgaa       120
     aacattgcga aaaaatttca aactagtgct gtcccatatt gaaaaataaa ggcataacag       180
     tctctatata gatcagcctg caaaaagtat aattattctt tagtaaaaat tatctgcgat       240
     acaaatttat cgcgagcaca ttttgattga aatttagcat catttataca ttcaattcat       300
     tccattttgt aatgtagaat atcctatata tttaacataa gaacagtagt gtcttactga       360
     atattgtaac atgacccaaa accgcgccct ttactgtaca caaagcagaa ccgcttctgg       420
     cggcaatgtc gatgtggtca gctagtcttg ggttgaatac gttaaatctt tacgaaagct       480
     aatttaccgt atttcatttg caatattgat gattaattcg ttttcaatca aataattgaa       540
     gttgcataaa caatggagct gaaatagctg ttgcgagaga agcacatctc ttcatccaga       600
     ccatggtgaa ggtggtaaga atgcatataa gtccggacga ggatctactc gggttgaaca       660
     ttttcttgct ttcacagggc atagtatatc ttcgtaccac tcgttataaa aatgtgaaaa       720
     cagttgattg gcaaagaaaa ctctcagatt gaaaaactat cacaacaaga aactcacagc       780
     actaaaaaac ctggacgcat ttaaatgagc aggaccggat ggcattgcac ccgtgttctt       840
     caagaatcgt tcagaagagc ttaccgttcc cctaaaacgc cttttcgaca tgtttctaaa       900
     taatggaaaa ttcccaaaag cttgaaaata ctcatatttg gtgcctgttt tttaatcagg       960
     cacaaaatct gacatacgga actatcgcgg aattgccaat atctcttgaa aacatgtaac      1020
     agctccaatt gaagtatttt taggctatca tgtagtgcag atatgtaaag ttgtaaggga      1080
     tcatagataa tagactcaaa actcactttt gtagaacatt ggaatttcat aattaaacaa      1140
     gcaaacagta agcttggctc cattaagagg ttcagcaaca atttgcataa cccttatact      1200
     attaaaatat tgcatattac atatgtaaga ccaattctga gatactgcca cctagtatgg      1260
     aacccgaacc atatcataca cgaagaaccc atagaataag tacagaagca attcctttta      1320
     tttccggaga ttgaattgta ctgaagaata tgaagaagaa ttaacaaatg agttaggttt      1380
     ttttaagcta taaaaaagtc tatgtattcc aaatcatgcg ttgttttagt atttatttaa      1440
     tcaaaattca attgtgaaca gcagtttgta gatagaaact tgctcatcct agtctttcct      1500
     cattattcag gatattttgg tttattgtaa agattttgag catacggata cccatgggca      1560
     tcggctgcca gatcactgta tagcaggttc ccagttcccc gggggatgtg atcatgttcc      1620
     gaattggcca cttatctagg agcccctgga atctactata gagtgattac tacatttgtg      1680
     attttgaaaa tgctccacat cttccaaggc atataaaacc tactgttcat ggtagacggt      1740
     gattctaaaa ctacttccag aagcatgaat tttaaatata ttgaagtttg ttacccatat      1800
     tggttttatt ccgtacaaaa aaatccgtgt aaaattatcc actttcatca gggtacctcg      1860
     aacctactat acagtagtca tgacagccgg aggtttatga agtactttct gaagcatcac      1920
     cttttaaaat cttgatattt gatacccatt ttgatgtgat tccggacatg tttttaattg      1980
     gccacatccc ttggggcacc tggatactac tagagagtgg tcatggcagt cggtggttct      2040
     gcaaattctt ccggaattat cacctttaga aatcttgaag tttgatgccc atattgatat      2100
     ggttcagaac atgttcctaa ttgggcactt ctcccagggc acctggaacc tactatagaa      2160
     tggtcaattc gtctaaaggt tctgaatatg ctgccggaag catcatcttg aagtataaga      2220
     ggaaaataac catcatcgtt ttaaaaaatt tcaaaaccag tttttttttg ctcaaatttg      2280
     aagcaatgtt catgaaaatc tatcattgca ttgcacttgc aatctgaaat gcaatgatag      2340
     attttcatga agatttttta aaattgaacg aaaaaactgg gttttcattt tggatgattg      2400
     ctgatgattg aatgatgtat tcttgagcat taaaggtcac taggatatag ctccggatag      2460
     tatatacaat acatgatagg aaatagaaac atgactgatc atattttccg gaaccagttc      2520
     tacgtaaatg gttatatttc tgaagatttt caacaaattt aaatgcgttt gccggcattc      2580
     aacttcctat tagttctagt ctctaggaaa attgtaaaca ctcatacaac ttcaccccgc      2640
     acaaattaca agcgacagaa aaatgccatt tggacatgac ctcggagaat ccggaacatc      2700
     tttggtgtca ggtggccaat atgcagggcc aagaaagttc ctgaaacaag accaaatttg      2760
     ccgccgacta cttccagatg cattgaattt catccattct tcataaagtt atgagcattt      2820
     ggaattagcc aaaattttgc tcatcgttct gagctggcgg tgagcctgat atggctttat      2880
     ttctgttgcc ttgcaataaa ataaaggcaa aagagaactt tcttcatttt tatgctctta      2940
     taattatatt tccgtgagaa actactcaaa atacatctga gcgctaagta ttgaacacga      3000
     tgatgttctg ctgggcattt attttggcat tgtcgacgct aaattggtgt ttttttgacg      3060
     acaagatatt taacttcatc tatagatttc tcgttcgata gcaattccat atgggacagt      3120
     tatgctttta tgggcag                                                     3137
//
ID   Sola1-N1_CQ repbase;    DNA;    INV; 1003 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A Sola1 DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1_CQ.
XX
NM   Sola1-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1003
RA   Kojima K.K. and Jurka J.;
RT   "Sola DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 625-625 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >79%
CC   identity. 4-bp TSDs are usually TATA.
XX
SQ   Sequence 1003 BP; 316 A; 163 C; 179 G; 345 T; 0 other;
     ctgccgctcc aatctagtcc gtcccatatg taaaaagtga gtgctgagat aacgccgtga        60
     gaagcccaaa aaatgtttca ccttttttta catttttaat caacaatttt tacatatttt       120
     ttcaacaatt atttcaatat cggttcaaaa aataccccta ccccaaattt gactcgaaaa       180
     agttaaaatt tataggtaaa tttggtaaat tttcgtgctg ggactgacct gactttattt       240
     gtccatcaat aaaggcaagt ctgtcaggtt atcaaggtag gcttgaacat ttacaacaga       300
     aatttgcctg tcatttgttg gtttgttttg gtagtttttc aagtattttt tattaaatat       360
     ctaaaagttt gtttgtttca ggttaatcta agttttagta aaattcctgg gtacgaaact       420
     ttaaccggcg acgagacagt caatttcttt tgctgcagag cgaggagata tttgaatgca       480
     cgtctcagca tatggaccct tgaattgacc gcaatctgcg ttggaaggga acctcatcca       540
     gaaccaggac catgggtatt cattcaagaa ggaacagaac tgtttttttt aaatattagt       600
     tacaatggta tgtagtttct tttttgaccg tggttgtccc ttgcatgagg aaaaaaggca       660
     gaatacgtat cgagtataac gcttcaaaat acataaaatt aattaaatat caacaactta       720
     agtatttttt taagttcaac aggctcttag agacatagtc tgtgggttat ttaaataatt       780
     acacatttat tttatcgatt tgtgagacat ttctaaccaa gaactgactt gcctttattt       840
     tgcatatggg acagcacaaa agtcattttt attttggaat ttttagaaca aacatgactt       900
     ttttattaaa taggcttgaa gtagatgtta aaacaagact tttgtcaggt ttatctcaaa       960
     atcgacaaaa atacatatgg gacggacttg cttcgagcgg cag                        1003
//
ID   Sola1-N1_LMi repbase;    DNA;    INV; 2786 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2786
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 91-91 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus.
XX
SQ   Sequence 2786 BP; 923 A; 519 C; 615 G; 728 T; 1 other;
     gaggcgctca gaagcaaagg ggtgtaagtg ccaaaattga aaatatgcag ttagagcatg        60
     caaatggaag aagagatccc attttattta gtggcaaagg aatataagta gatttattga       120
     cagatgctgc tatctgacga gttttctaaa acctacttaa tcactccast catctgtttg       180
     gaggaagacg gatataagtc acttacaccc ctgtgcctcc aagttgtttg ccgacattcg       240
     caagtcagtt atattgcagc agtttgtagg ggctgtttat cagtgatttt cgtgcggtta       300
     ctggagaaga gttctgagga acaattttat acaatgaatg aacaggagat cagtgactgt       360
     ttactcgacg aagacgcagg taattattta ctgcattaaa aagaaaactt tctttgtgta       420
     cagcatagac ataacctaca tctttcggta actttgtgcc ttatttgttt atatttgtga       480
     taacaataat tggagttttc taggcaagat ttcctgatag attcataaaa ccgtttaatt       540
     cagaattttt atttcagacc ctgttgatga tacggacaag gaccaaaatt acgttccaca       600
     agacactgac aacgacgact ctgcatacga gattcaagga agaatgaaag tacaaagaca       660
     agacggcgtt taaggcgtga aacacttgga agaggaagca aaactaatgc gtgattctgg       720
     caaagcgtat tctactgcta aggggaagct agtccctgaa aaatcagtgc agtcctacga       780
     tcataagcgc cgatatcagt gatttcagaa agtgagagaa agaaatgttt gaggagttct       840
     ggggcctaga atcgtgggag ttgcaaactg catttataaa tggatgcatg gaattacgtg       900
     caccaaaaaa accgccaaaa ctgccataaa gaacaagcaa acgatgtggt tatgctagca       960
     ggaaaaaggg tatgcaagtt atctttttaa aaacactgac atatctcaga agaggagcaa      1020
     tgtcctgaag cggaagcagc acacaggacg tgtttcccct cgtgacaaaa gaggtaagca      1080
     cagtcgcccc cgccgcacga aacataagcc ggctgtttta agaatgacgg gataaatcca      1140
     gtgaaagagt cgttttacag gcatgccttt gttacccatt acaatctaag cttcaaagca      1200
     ccacgaacag atacatgcaa taaatgtgat agtttagaga tgaaaattaa atttggagag      1260
     aatgaagaaa atattgaaag gagcaaggct gaaaaggagc gtcacttgat tgcgctgaaa      1320
     atgcaagaac agctaagagc ttagctcaga aaaaggcaaa ggaaaaccct gatgttgtgc      1380
     tatatgtttt gatcttcaga aaacgctgcc ttctccaatg ttaacctgta acaaagttta      1440
     ctactcaagg cagctatgga catacaactt ggcaatacat gaccttcgcc gcccccgcgc      1500
     ggggcgcccc cgggcggggg ggccgggcgg ggcggcggcc cgggcccgcc gcgccttgca      1560
     aaaaacaacg ccactatgat gatgtggaat gaaactgacg caggaagggg atcacaagag      1620
     ctggatcctg tttacttaag cacgttttac agctacctca aacagttaag tacatcatcg      1680
     cctttagtga caactgtgga ggacaaaata aaaatcagtt tattgccaga ttttggatgt      1740
     acattgtaag taacacacat attgagactg tagaccataa gtatttagtt gcaggtcatt      1800
     ctttatggaa tgcgatgaag actttggaat aatcgagaaa tataaggaaa caatccaata      1860
     cgtgtttgtg cctgatgatt ggctaaaagc tgtagcatcc gctcaccgta aattccgggt      1920
     tatacgaatg aataaagaaa ttttctatct gtggaaggaa tgaatgacac tcttaaagac      1980
     tctgtagcag ggatcaggaa atttcaatgg ctcaggtttc agaagagcaa tccacgtact      2040
     gtgctgtaca agtattctgt agatgacaac gaagaattca aatcctatga tatgagaaag      2100
     cccaagattg gacgtccatc caacttattt accttaaaga ctctgtacaa ctcaccagta      2160
     aaaattgata cgaagaaata caaagatctt cagtcacttc tagaatttgt gccaccgatt      2220
     catcacagtt tctataagaa ccttgaacat gggagaaaag ataagacgaa gaagaagccg      2280
     tcaaaccgct aacctctgct acagcagagg atgaagacag tgtccaaatg tcagacttgg      2340
     aacatgactt tgtatgggaa tctgaataaa aagagttttc gttggcactt aatggctcta      2400
     ttttcattga tgtgatgaaa acctgttagt tgcaccgttt cctttaaata taacttgttt      2460
     aatatctagt atctatgtat tatcctcctg gaaattacca aaaatatgga ataaatcatt      2520
     ggacgcaaaa gggtgtaagt gatagatttg gaagcaaagg ggtgtaagta cacgcacggt      2580
     ctaacaaaga caattagtgt ggcttaacaa catgttatta ctccatgata tttgttctag      2640
     aagtacagaa gtacatgtag aatgtgccgt tatcgatcaa attaaaataa catttaactg      2700
     gaattttcaa atgtagctta actttggagc ccaattactc aaaaccggtg tttaggcact      2760
     tacacccctt tgcttctggg cgcctc                                           2786
//
ID   Sola1-N1_PPo repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N1_PPo.
XX
NM   Sola1-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-257
RA   Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2752-2752 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 257 BP; 88 A; 41 C; 37 G; 91 T; 0 other;
     atcgacgggt gaaaggctat ttgtttcaac cgccatttta cgcgatattg actcatatat        60
     tcagaatttt aaatatgaaa taaataatga agtatgcaga attatagtaa ttttaatcta       120
     gaaccggtct gaaaatcttt caattgaaat tattttcagg atttgctttt tttttttcta       180
     aaaatgaaga ctttaaatgg ctctcctgaa catttaacct aatggcgctt aaaacaaata       240
     gcctttcacc caacgat                                                      257
//
ID   Sola1-N2_AAe repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N2_AAe.
XX
NM   Sola1-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-424
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1292-1292 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. 4-bp TSDs. TIRs are 32 bp long.
XX
SQ   Sequence 424 BP; 141 A; 71 C; 74 G; 138 T; 0 other;
     ctgcccataa aagcataact gtcccatatg gattttcgaa ccaacacctt ttttcgtcgc        60
     aacattcatg ttttaatata tactttacta tgcatatgaa aatttacaca ctttgtttga       120
     aaatgttgtg gaaaaatatg aagttggtgc agtcccatat tgaaaaataa aggcataaca       180
     gtctctatat gaactttcaa cccaaatagc aactgcaaaa cgtgaattgt gttcaagttt       240
     atattttttg ctgatcaata taagcaaaat gagttatctg tgcggtggtg ctaaatgaat       300
     atggcatgca gaaatgtact agaaaattat gaacatttgt atgagaaggc aaacttcaaa       360
     ctttgagcgc tgttttctca atgcctacta attccatatg ggacagttat gcctttatgg       420
     gcag                                                                    424
//
ID   Sola1-N2_CQ repbase;    DNA;    INV; 248 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A Sola1 DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N2_CQ.
XX
NM   Sola1-N2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-248
RA   Kojima K.K. and Jurka J.;
RT   "Sola DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 626-626 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity. 4-bp TSDs are usually TATA.
XX
SQ   Sequence 248 BP; 85 A; 49 C; 51 G; 63 T; 0 other;
     ctgcccatgt tcgcataaat gtcccatatg caaaaacagc aagctgagaa aaacgcgagg        60
     gaagtttgtc ccacacataa ggctacgtgt taagttttca cgaaaaaact ggatttcctc       120
     ctgatttcta gaacaaagta ctggatgtta taggctcttt tgaaagagca cacgattttg       180
     aaccaaactg catcaataac tcaaaagtga tgaaaatgca tatgggacat ttatgcgatc       240
     atgggcag                                                                248
//
ID   Sola1-N3_AAe repbase;    DNA;    INV; 1046 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N3_AAe.
XX
NM   Sola1-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1046
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1293-1293 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 4-bp TSDs. TIRs are 27 bp long.
CC   This family is >82% identical to both termini of Sola1-1_AA.
XX
SQ   Sequence 1046 BP; 340 A; 180 C; 189 G; 337 T; 0 other;
     tctcgcgttc agtatcataa gggcgtatct gcagttttgg cgggaaatga gatttcgtaa        60
     tatttgaatt ctataggtcc gaaactataa ccctaccaaa aattattact aaaaacattc       120
     tagaaatacc atattttcaa aaacataatt tgacgtaact acagaactgc aatgggaaaa       180
     aagatacgtc aggcgtaact tttctggtca tcatctgttg aagttacgcc aactgcgata       240
     ctgttccgtg tttacaaaat gtctaacaga aaatatttgc tgctccgtat tatttcttca       300
     ttttacacac gatatggcgc agttgctaag ttcgatgcat tcgaggatgt agtatggttt       360
     acacctgaag aaatggtgaa ggaatatact gcagttgtag gtgagtgatg ttaaaaaagc       420
     agtccaaaca tttttcagta aatttgtgtt accatcattg aacacagcac agcggattcc       480
     cgcacaggca atgttgtagg aacagaaaag gacaatctgg aaccagtgta caataactcg       540
     taataattcg atcaaattct ggttgaaaat tgacaaactt tccctgtatc ttagccgtaa       600
     acgatacatg agcaccaaca tggtattatc gaagaaagtt ttgtttcatt aattgtaaat       660
     atgtccaaag tgtacgtact tgagaagctg gttctattcc agtaggcatg aaattttaac       720
     aaaaagttat tagagactct cagagtctgt ttggtgttat aaaaattgtt aatttatcaa       780
     aaactaatga ttttgcttcg tggcgtaact ttttccaatg cgacataccg gcgtaactac       840
     aatttatttc attttccagc atattttacg tgaacttcat ttggcaccgg atactctaat       900
     gtcgtgatag tatttgtata aattttcaga taaattcact taaaaacaaa aaaatacgtg       960
     aatttcttgt ttgttgaaaa cttcaatatc gattttctcg gtttcttcga aactgcagtt      1020
     acgcccttat gatactgaac gcgaga                                           1046
//
ID   Sola1-N4_AAe repbase;    DNA;    INV; 1247 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N4_AAe.
XX
NM   Sola1-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1247
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1294-1294 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. 4-bp TSDs. TIRs are 27 bp long.
CC   Both termini are 70-80% identical to those of Sola1-3_AA.
XX
SQ   Sequence 1247 BP; 395 A; 227 C; 238 G; 387 T; 0 other;
     ctgcccatac tcgcaataca gtcccatcag gaaaatcatc atgtcgagaa aaacgcaatt        60
     gaacattatt gcaaaggttt tcgtaacgcc gctgcaggca gcagaaaatt ctagtggcat       120
     tactcaacac attatcatta gagtacaaga aaatgaacaa ctactaaaat attgtgaatg       180
     cggttgtttt ttatatacaa atccaagata cttgccaatg ggactcgtta tccgagtact       240
     ttcctcttca aattcaaata tacccgcata ccagtcccat tacttgggac tcgcttactt       300
     agttatcgcg catcttgaca catttattgc caagtttatc atggattcca agggactttt       360
     ccttttgcta ctatagtgct ttcatatttt aattgcgata cttattatac aatataaaat       420
     aatatggtgg tgatagtgac agtcctcaag acattcctgg gtttgatgaa tgcgttgcgg       480
     ccggccatat aggaaaagta gttaggattc acctgcagca tgttgtagta tctgacacac       540
     aggtactaag gcgggtaagt tttgattagc ctgatttcga aaaagctgtt ggacatttct       600
     tagatatcca taatgctggc ttttcattgg accttcttaa ttatcaccat tagtgtcgct       660
     aaacgtactg cttgaccagt cgacgatacc agtggtggta tgctaattcc catgttagcc       720
     caaaaagcct cccctccatg tcgttagaaa gatgaaccta ccggagattt aggtaattgg       780
     tcagaagaca aaagttatga cagctatagg tttgacttag agggaagcta tttatcttat       840
     ttttaattta gactctcata aggactagat atgtttcaat cactcatcgc accagaagca       900
     ttctagacaa aaatgaaaaa caacatttgt tatggagtgc agatagttta aaacactgta       960
     atttgtagca tttctttttc ttatgggatg aaaactacga tgcaagatta cagaaatcat      1020
     aataggaata agggtacatg aatttcgtcg taatctacta gtgggactgt tatgcgggta      1080
     ctttcaatat gggacgcaca tgatttggta tttttttcgc attttgtcca tacaaaaata      1140
     caattttaag tatgatacca tgaagtacac taacaataaa catgattcat gaagaaaact      1200
     caaaagtgat gaaaattgaa atgggactgt tttgcgagta tgggcag                    1247
//
ID   Sola1-N5_AAe repbase;    DNA;    INV; 1831 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N5_AAe.
XX
NM   Sola1-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1831
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1295-1295 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 4-bp TSDs. TIRs are 29 bp long.
CC   Both termini are 78-90% identical to those of Sola1-2_AA.
XX
SQ   Sequence 1831 BP; 606 A; 314 C; 338 G; 573 T; 0 other;
     ctgcccctct ttgcacaaca gtcccatgtt ggaaaacgac aaactgagaa aaagacgatt        60
     gaaatgtgga aacaatttcg ctccattttg agtctttatt tggcctaaaa tgtgttaaat       120
     tgctacatat cactgtttgt tgagtacacg aacaaaccta ataaatttct tttgaattca       180
     agttgaaaat ttgccttaaa atgcacaaaa atcgtagcga gactgttatg cgattatata       240
     caatataata taccaatgta attgcatacc agtcccatca tgttcatcgg ctcgttcgac       300
     agctactaaa acactcattg ttattaatgc actggttgtt tcatttgcta tttatgttct       360
     ttggccgtaa aaatttagtt attatagtac agtcaactct ccgtaactcg atattaaggc       420
     gactatcgag ttagggaaat atcgtgttaa agaacacaaa atcagggtaa ctttggttaa       480
     agggaccatc gaggtatcca tgaaaaccca catttactac acattctata actcgatatc       540
     gagatacgga atagcgagtt acggatagta tactgtatgt ccatggatga atcaccagat       600
     aaaaaaaaac atcggattga atgatttctc aaaacacacg ttatgatgtg gaatgcgctt       660
     acagtcatga gtcccagtca tgagagaccc agatgatcat cttttggata atgcggaaat       720
     ggaatccgat ggaaatgatt cgagatgttc cagaacaacc tagctaatct gttatatggg       780
     agatccagaa tgacgaaaca aatttttcag gcaacttctg taagccttga ccgcagatct       840
     aaaatacagt ggctcgtggg atgtgccgag ccaaagtctt tctgtatttt cccaataagc       900
     agatgaagaa gacgatgtgg ttgctgattg tttttatatg gaaatcttgc tttcgcattg       960
     aaaagttttt attttgcaca cttacaagca agtactcctt aagtcaattt taccagttat      1020
     cgaaaaacgc aaaaataagt tttagttcga tattcctgag caccagcaaa gaatcattac      1080
     aaaatttaaa taaaaaatgt agaatgaact ttattttatt ttattttttg ttgctcattt      1140
     tttttattcc cctcttacca cccaaatggt tacctacgga cataaaagaa gattaatatt      1200
     tgtataagcc ttattaaaga aaatttgtaa tgcatcgtaa ttgaaaatac ataattatgt      1260
     gtgatatcca ctaatttaaa aatattttcg aaacaacgtg aatacatgac atttacaatg      1320
     tcgtaagcaa gtgtgtatta aatacagtca aacctccatg agtcgatatc tgaaggaatc      1380
     atagactcat ggaaacatcg agtcatggaa cagaaatgct ttggaaagct gtttgagcga      1440
     atcatcatag ttaccatgaa attttgttta agtatggttc catgagtcga tattaagaca      1500
     tagaacatcg actcatggag gtttcactgt ataattgatt tccctttact tcgctacaca      1560
     tcagtgaata actagtagta tcgagagtcc gaatgtagta ctagaagtgg tacccattct      1620
     gagcccgatc actatacgga ctttgatgtg actgttatgc gaatattttc aagatgggac      1680
     aacacaaatg gggtttgttt ttgtacaagt taggaacaaa ggctactttt ttagcagttt      1740
     ttatcgatct tctgacgatg ttgagttgat ttatgcaaaa aacgcaaatc ggtcaaaagt      1800
     cgacatggga ctgttatgcg attatgggca g                                     1831
//
ID   Sola1-N6_AAe repbase;    DNA;    INV; 1283 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N6_AAe.
XX
NM   Sola1-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1283
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1296-1296 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus. 4-bp TSDs. TIRs are 28 bp long.
CC   ~72% identical to Sola1-N4_AAe.
XX
SQ   Sequence 1283 BP; 373 A; 224 C; 278 G; 408 T; 0 other;
     ctgcccatac tcgcaataca gtcccattag gaaaatcacg atgtcgagaa aaacgcttct        60
     aaacataaaa ccctccattt tcgttcttcc gctgctggaa gtagtaaatg ccggtggcat       120
     tgctcaatat actatcattg caatgtgcaa aaaccgtaaa taatttaaat ttagtaaaac       180
     tggttgtttt ttctatccaa attagggtta ttgcagatgg gactcgttat ccgagtattt       240
     ctctcgctaa acgcttgaat acccgcatac cagtcccatt actggggatt cgcttacttt       300
     gttatcgtgc accttgacac attgttgttc aagtttacga tcgattgcaa tgtacttttc       360
     tttttgcagc tttcagttat caactatctt tcaatagtaa taatgtccct tgaagttctt       420
     aagctgtaca gtggtgatat gtaattgaga aaatggtgaa gatttcctga attcaaatta       480
     accgttgcgg tcggccatat ggaaggcttg ctgaaatcgc agcacgtgac gggtgaagga       540
     tttgaaaact atcaaagaaa ggtgaataga acatgttttg gtccacttga tgaaggcgaa       600
     tggcggttcc caagatatag ataatcctga tgggagtcag gagctttcct gtttctcggc       660
     atttggtgct gcaaacactt agtttgacca tgtagacact ggcgacgatg ctagcgacga       720
     tgtgcgtaat cttgcggcgg ccaaacaagc ttctcacttc tcgctgttgg acttcagcct       780
     gccggagatt ctgataatga ttggccgcag gaagcagtag agtgaatgga gcagtagaat       840
     agtctcagga aaactatttt gctttatttt agtttacagg caactagcct gatgtggtgt       900
     tagtattaat cgaagaacag aagaagtcgt tatggtaaaa ccttttttaa acaaaaataa       960
     gagtttttct tgattatagt tgatttgtac tttcctgatt tgtttgattg tttctataag      1020
     gaaatgagaa tcgcaatgca agctttcaga aatgatcaca ggaataggtt tagttgaatt      1080
     tcttcataat catcgaatgg gactgttttg cgggtacttt caatatggga cgcacatggt      1140
     ttggtatttt tttcacattt tgtccataca aagacacaat ttggagtttt attttagaaa      1200
     gtacactaaa aatgaatact attcatggag ctaactgaaa agtggcaaaa aatcaaatgg      1260
     gactgttatg cgagtatggg cag                                              1283
//
ID   Sola1-N7_AAe repbase;    DNA;    INV; 1262 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N7_AAe.
XX
NM   Sola1-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1262
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1297-1297 (2011).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 4-bp TSDs. TIRs are 27 bp long.
CC   ~74% identical to Sola1-N4_AAe.
XX
SQ   Sequence 1262 BP; 402 A; 236 C; 236 G; 387 T; 1 other;
     ctgcccatac tcgcaataca gtcccattag gaaaatcatc atgtcgagaa aaacgcttct        60
     aaacataata caaaacgttt tcgtttcacc gttgctgaca gtagtaaatt gtggtggcat       120
     tactcaacac attatcattg tagtattata aaaccttcaa gaactaaaat atagttaaag       180
     tggttgtttt ccatatctta atctaagatt caatccaatg ggactcgtta tccgagtatt       240
     tttcttgcca aacacaaata tacccgcata ccagtcccat tacgggggac tggcttacta       300
     tgtttttacg caacttgaca caatcgtttt caagtttaca gtagatctca cgctaaatcc       360
     caaggaatkt ttctaactgc aactgttagt actagtaaat ttggattaaa aatgtccttc       420
     aaagttattg tactattcgg tggcgacagt gatcatgttg aagactctcc tggattttat       480
     ttaactgcag aacatgttcc ggtcggccaa tctagaaagt taattgaatc caccacgggg       540
     atgttggttt caagcaatgc aacaaagcaa ttttcggtca gcatgaagac ggcaaagcta       600
     ttgaagattc cttagatata tgcggattgt cctgctgtat gccatgaacc accttacttc       660
     ttggttttag aagtcgcatg tacctactta gggtgactgt ggaaactctg gctggccaaa       720
     aaaatcaacc caatttcatg ccataacaag ttaagcctac cggagagtcc ggtgatcatt       780
     ggccggagta caatagtagt gagagcagca gcattgactt aaagggaagc tattttgact       840
     atttttggtt tagaggctcg caagcacaca tttcgagttg cggttctaga acatcgcagc       900
     agaagtcatt ctgggaaaac tttaatatca cgtaagaata gatactttac atgaataaac       960
     atggtttgag taattgaaat ttgtattatt tctcctttta ataaaaaaaa tacgatgcaa      1020
     gattacaaaa cttataacag ggccaggttt gcttcaactt ctttgtaatt cactaatggg      1080
     actattatgc gggtactttc aatatgggac gcacatgatt tggtattttt ttcgcatttt      1140
     gtccatacaa aaacgcaatt ttaagcatga tttcataaag tacactaaaa ataaacacca      1200
     ttcatgaagt taactaaaaa atggttaaaa tccatatggg actgttatgc gagtatgggc      1260
     ag                                                                     1262
//
ID   Sola1-N8_AAe repbase;    DNA;    INV; 77 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N8_AAe.
XX
NM   Sola1-N8_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-77
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1298-1298 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
SQ   Sequence 77 BP; 23 A; 17 C; 17 G; 20 T; 0 other;
     ctgcccatac tcgcataaca gtcccattta tataggaaat cccatagaat atgggactgt        60
     tatgcgagta tgggcag                                                       77
//
ID   Sola1-N9B_AAe repbase;    DNA;    INV; 255 BP.
XX
AC   .
XX
DT   09-SEP-2011 (Rel. 17.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 4)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N9B_AAe.
XX
NM   Sola1-N9B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-255
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2472-2472 (2012).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus.
XX
SQ   Sequence 255 BP; 92 A; 48 C; 43 G; 72 T; 0 other;
     ctgtgctgtt acttcaatag ggcctaactg acatgagcga tttctcttca tcgatcctct        60
     ctttcgctaa taacttcgct aaattagata aatctgtaat atttcttgtt aatgaagcaa       120
     gatatagtga ttcttcatcc tacagcacaa aaatatgtta cgaaaagaga atcagttttc       180
     tgcaataacg caaagagagc aacgatgaag agaaatcgat gaatgcagat aagcccttat       240
     gaaaaaacaa cacag                                                        255
//
ID   Sola1-N9C_AAe repbase;    DNA;    INV; 256 BP.
XX
AC   .
XX
DT   09-SEP-2011 (Rel. 17.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 4)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N9C_AAe.
XX
NM   Sola1-N9C_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-256
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2473-2473 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~81% identical to consensus.
XX
SQ   Sequence 256 BP; 70 A; 56 C; 50 G; 80 T; 0 other;
     tctcgcgttg agtatcataa cggcgtatct gcagtgatcg attctcttca tcgattttct        60
     ctttcgctaa taacttggcc aggcgaatgt tttcgactgt tattcttgtt tcagtaggaa       120
     gttctcatcg tccttcttcg tactgcattg taaaatctaa cgaaaatcga ctgaatttcg       180
     cgtaacaatc cgaagagaaa atcgatgaag agaaatcgat cactgcagat acgcccttat       240
     gatactcaac gcgaga                                                       256
//
ID   Sola1-N9_AAe repbase;    DNA;    INV; 257 BP.
XX
AC   .
XX
DT   09-SEP-2011 (Rel. 17.12, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 4)
XX
DE   A non-autonomous Sola1 DNA transposon family from Aedes aegypti.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1-N9_AAe.
XX
NM   Sola1-N9_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-257
RA   Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2474-2474 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~95% identical to consensus.
XX
SQ   Sequence 257 BP; 73 A; 53 C; 52 G; 79 T; 0 other;
     tctcgcgttc agtatcataa gggcgtaact gcagtgatcg atttctcttc atcgattttc        60
     tctttagcta attacttggc cgggcgactg ttttcgactg ctatttttga ctcagtagaa       120
     agtactcatc gtccttcatc gtactgaacc gtaaaatgtt tcgaaaatcg attgaatttc       180
     gtgtaataat gcaaagagaa aatcgacgaa gagaaatcga tcactgcaga tacgcctgta       240
     tgatactcaa cgcgaga                                                      257
//
ID   Sola1N-1_AP repbase;    DNA;    INV; 331 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   06-JAN-2017 (Rel. 22.01, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola1N-1_AP.
XX
NM   Sola1N-1_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-331
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2069-2069 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 331 BP; 114 A; 47 C; 52 G; 118 T; 0 other;
     ctgtaccaca gaagtcaact aacgcaagtc cattttttga aattttgagt tagttatata        60
     atcagaatat gctttttgtg atctttttaa aggtattaaa acgtaagtcc tatatacaat       120
     aaatgcatag atagcaagaa gtatactaac ttaagtccta aactatgata ggagtataga       180
     aacgtatgtc cagcgtttac ataagaaaag taatacaaaa taatattttt gaagtataca       240
     attgtaagtc cattgcaaca aatatttttg ttttgtctct cctgtaaaat ttgctttttg       300
     tgacttgcgt tactcgactt ctgtggtaca g                                      331
//
ID   Sola2-10_LMi repbase;    DNA;    INV; 4214 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4214
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 92-92 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(960..1019,1023..1259,1235..1678,1682..2284,
FT                 2387..2785)
FT                 /product="Sola2-10_LMi_1p"
FT                 /translation="MQKCVLVVLLFKQVAVLGEHNLNVIITTYGTKCDIRF
FT                 VHDLDELNQDLLLWRSGLHPVGMRSTVQGNISVCYHHMKVFLDKYSFLQRN
FT                 CFDPFGSIGRQPIWIHRKTVRCSLREVDIKSVLKVNQCMGLNMKPGQKLCS
FT                 RCVTLLKNEVYSDNVHDSDEEYHPPSTTADEQLNTSVTALGLSPMRHRELG
FT                 KRDRPSYGRRKLXEAQTELKHKIAKTLMVEEEELSAPKEQKSCQKCSDLDK
FT                 IVHDLKKCVVSTRQKKVAILTLAPSSWSTECTAKEFSVSTYMVKQARKIKA
FT                 TQGVLPELRQAQGKQLSSEIKALVPEFYESNDYSRIMPGKKEYVSVKIGNL
FT                 RVQMQKRLLLCNISELYVEFKKKYRNAKVGLSSFFNLRPKWVVPVSARGTH
FT                 TVCVCETHQNAKLMFAAIKDSGLDYKDAMKLLVCDISSYQCMMHSAESVLV
FT                 RQNNEAKYSGRFVELCCEKMDKLTTHSFTAIAQSAYLQFCKDHLKQDEIIV
FT                 ILDFSENYAFIVQDAIQGYHWDNTQATLQPFAIYRSDESGTVSVMNLCVFS
FT                 DCLIHDPIAVHAHICTVMAYVKNKFPLYILQNTS"
XX
SQ   Sequence 4214 BP; 1360 A; 752 C; 887 G; 1205 T; 10 other;
     gggtcattcc atgtcaattc aaccagtttg agaaagtgtt ccagctcata gtctcagatt        60
     tgamtgaaat ttgacacacc atgstaccat gtgtggaaga ctctgtacaa agtattaggt       120
     tcccctgaca attgttccag aatagtagct tgtgaaagaa gstggtgcga cccaggaatt       180
     gcaacgcgcc tttggcaatc tatcttcaga gccaacttca gggcttaata acttcgaact       240
     ttccgccmat cccagtgaaa gttttaccac mtagtaacat cccttaggga acacactcca       300
     tgkgtcaaaa caccaacaat atgtttctga ggggaaataa aaaaattcaa aatgtgatta       360
     aaaacttgca acatgttaaa agatacatta ttgtaggtgc ccatcattcc agatatgatt       420
     cactcaggaa ggggataaaa tttttgttgt aagcctcatg tgggctaaac acacacacaa       480
     cacatcatgg ccacatctgt ccacatactg agttacatgc acaggaaaat acaaaaaagt       540
     tgaaaaatca cctgaagaat gtggattttc aaagtatggt agcacaaaag ggacaagtga       600
     taccaaagcc aaactttata cactacataa gtagtccata atgtaatatc ctcaaaattt       660
     caacatgtta ttgcaaggca tttgtgtaca acaagagttg acagagacat atttggttac       720
     atttgtttta acatgattta gcaagtaata gtgatgatgc agatagcttg tttctaataa       780
     agcgcagcaa ttgttgggaa ccatttggca actamaattt agacaatgga agttttcagg       840
     gacactatga gtcattgtta ggcaggaaca acaaaggaaa caagcttgsa acaaaggtaa       900
     ctcatgcttt taagattctg gttcaaacag gtcagtgctg ttgtggaaag gcagtatgga       960
     tgcagaagtg tgtgctggtg gtgcttttgt tcaaacaagt tgcagtattg ggagagcact      1020
     agaatctgaa tgtcataata acaacatatg gaactaaatg tgacattcgc tttgtacacg      1080
     atctggatga attaaaccaa gatttgttgc tgtggagatc tgggttgcat cctgtgggca      1140
     tgagaagtac agttcaagga aacattagtg tttgttatca tcatatgaaa gtgtttctgg      1200
     ataagtattc tttcctacaa agaaattgtt ttgacccatt tggatccata ggaagacagt      1260
     gaggtgtagc cttcgagaag ttgatataaa atcagtactg aaagtgaatc agtgcatggg      1320
     acttaacatg aaaccaggac agaaattatg ttcaaggtgt gtcacactgc tgaaaaatga      1380
     agtgtattct gataatgtac atgacagtga tgaagagtat catccacctt caaccacagc      1440
     agatgagcaa ttaaatactt cagtgactgc tcttggtttg tcacccatga gacacagaga      1500
     gttgggaaaa agagacaggc ccagctatgg tagaagaaaa ctacwagaag ctcaaacgga      1560
     attaaaacac aaaatagcaa agacactaat ggtggaagag gaagaactat ctgctccaaa      1620
     ggaacagaaa tcatgccaga aatgctctga tttggacaaa attgtgcacg atttgaaata      1680
     aaaatgtgtc gtatccacac gccagaaaaa agtagctatt cttacccttg caccttccag      1740
     ttggtctact gagtgtaccg caaaggaatt cagtgtttct acatatatgg taaagcaagc      1800
     taggaaaata aaagcaaccc aaggagtgct cccagaactt cgacaggctc agggtaagca      1860
     attgagttca gaaataaagg cgctagtgcc ggagttttat gaaagtaatg actacagcag      1920
     aataatgcct ggaaaaaaag aatatgtttc agtaaaaata ggaaatttac gtgtacagat      1980
     gcaaaaaaga ctcttgctat gtaacatatc agaactatac gtagaattca agaaaaagta      2040
     tcgaaatgcc aaagtgggct tatcgtcttt tttcaatctt cggccaaaat gggttgtgcc      2100
     tgtaagtgca aggggcacac acactgtgtg tgtatgtgaa acccatcaaa atgctaagct      2160
     gatgtttgct gctataaagg attctggtct ggattacaaa gatgcaatga agctgctagt      2220
     gtgtgacatc agttcatacc agtgcatgat gcacagtgcg gaaagtgtcc tggtaaggca      2280
     aaactagcag aatacatgaa taataaactg tatggtgagt gccttatgga tgacgatgaa      2340
     cttatttctt ataaacagtg gacacacacg gatcgcacga tcttgaaatg aagcaaagta      2400
     cagtggaaga tttgttgaat tgtgttgtga aaaaatggac aaactgacca cacacagctt      2460
     tacagcaata gcacaatctg catatctcca gttttgcaag gatcacttga aacaagatga      2520
     aattatagta atactagact tttctgaaaa ttatgcattt atagttcaag atgctattca      2580
     aggatatcat tgggacaaca cccaagcaac tctccaacca tttgcaattt accgtagtga      2640
     tgaatcaggt actgtgtctg tcatgaactt gtgtgttttt agtgactgct taattcatga      2700
     tcccattgca gttcatgccc acatatgcac tgtcatggca tatgtcaaga acaagttccc      2760
     tctgtacatt ctgcaaaata cttcatgatg ggcagtagcc agtacaactg taaaaacctc      2820
     aaaatttatg cttaccatga tttcagattc aagaatggat ttttcaacag tcatggtaaa      2880
     aatgtatgtg atggtattgg tgtaccataa gccaagtaaa agcagctggt aaaactattg      2940
     caggcacaca tcacttttct ccagtggact ctgacaacat gagatgagca gactgtccgg      3000
     ttataattat aggttcatca caacattcac agtgtgtctg accctggatt cagaagcaaa      3060
     atggcaacat accaggttgc tatgttattg ctgtttatga tgaaatggac ttaggatgtg      3120
     ttgcagagtg ctgcgaagca gaaggtgatg tattagtgaa cttcatggca ccacaggacc      3180
     agcaagatca ttccactggc catgtttgac agacatatgt gttggattcc ttttgaacat      3240
     attcttatga cagttccagt tcctactaca gtgtcaggaa gacagtacaa tttgccactc      3300
     gatgtacaca gtacagttgc taaagcatgg gagaacttca gctccaagca caatcgactg      3360
     gttttggcag ttaaggtgca ttaaacatta attataggcc gtgtttatct atatgttgtt      3420
     gcttagtgat aaacaggggt aataaaagag gcagaagagt gtaagatatt tttgtttttt      3480
     aactgtggag ctattgtcac gtcatcaaat acatctgtca actctcattg tacactaatg      3540
     ccttgcaata acatgttgaa attttgagac atataacact atggtctact tatgcagtgt      3600
     atgaaatttg gcttkgatac cacatgtccc ttttgtgcta ccacacttag aaaatacatg      3660
     tttttcaggt gatttttcag ttttttgtat tttcctgtgc atgtaactca gtatgtgtga      3720
     cagatgtggc catgatgtgt tgtgtgtgtg tttagcccac atgaggctta caacaaaaat      3780
     tatccccttc ctgagtgaat tatatttgga atgatgggca cctacaatat gtatctttta      3840
     acacattaca agtatttaat cacattttga atttttttta tttcccctca gaaacatatt      3900
     gttggtgttt tgacacatgg agtgtgttcc ctacgaggat gttactatgt ggtaaaaatt      3960
     tcactgggat tggcggaata gttccaaagt tattaagccc tgaagttggc tctgaagata      4020
     gattgccaaa ggcgcgttgc aatttccggg tcgcaccacc ttctttcaca agctattatt      4080
     ctggaactaa ttgtcagggg aacctaatac tttgtacatg agtcttccac acatggtagc      4140
     acaggtgtgc taaatttcag gcaaatctga ggctatgagc tggaacccct ggttgaattg      4200
     acatggaatg accc                                                        4214
//
ID   Sola2-11_LMi repbase;    DNA;    INV; 3158 BP.
XX
AC   .
XX
DT   24-JUN-2014 (Rel. 20.01, Created)
DT   24-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3158
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 93-93 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1256..1738,1742..1891)
FT                 /product="Sola2-11_LMi_1p"
FT                 /translation="HWRIYFSDGAASQYNNYKNLRNLTYHQEDFGIEAEWH
FT                 FFAMCHGKSPCDGIGGTVKRLARRASLQATFPSNYILTPENLYTWSLNKIQ
FT                 GIIMFFVSSQEIKSYKGFLEGIYSAVKTVPGTRSHHAFLVIATNTILMKRL
FT                 STDANGTTVAMGTPENSSFEHFVGQYVAFRYDEKCYIGHISQVSHEFRDVE
FT                 IICMSPAESQLLKWPNRKDIV"
XX
SQ   Sequence 3158 BP; 1035 A; 546 C; 546 G; 1028 T; 3 other;
     gggtcattcc gtggaaactc acggggtgtg ataaggtgac catttcagaa tttgatcata        60
     tttggtgcat gggkacctac atgtcttaat agaaaaacta ccaaatatca ctgtcctatc       120
     tccaaccatt gttgagaaaa ttatgtttga aggctgaaag gtgtgtatgc gatcaacagt       180
     cgggcaccaa aatccccatc ttcagagggc tactgcttag tgatgagttg acctatagac       240
     ctcaattttt ttatgcatca catatgtaga gcactaagtt gatatatgat ataaaaagtg       300
     agaaacatca tttagattgt ttatgaaaaa tgttgaaaaa tacacttttt tcacactgcg       360
     gtttaaattc acaattttaa aaaattcata actctgccta tgaaaacagt acagccctca       420
     attttggtac tgtagctctt cagtcctagt attaattata aaaaataatg gaaagcatat       480
     tgcattgcat ttaatagttc ttactttcag ttaaagttga ctccatcagg aaaaatggwc       540
     gattttgatg aacttcaaag tcctggatgg gtacgtagac agttgaatct gaacttgatt       600
     ttttgctgaa atgtttgcat atttggtagc aatcttgggt gcaaagaaga atatcctaac       660
     tcacttactt catagataaa caataacatg aaaatgccat atatgtgtat cattaatttt       720
     cagcactact gggtattaga acattaaaac catgggtatt ccttgaaaca gtgttctcaa       780
     actgtatatg gttgacctga aggacagaac tgtataatag tgatagctga aaacagttat       840
     taagcattta cttaataaat atgttatatt taacttttat cagcttgggt gcacaaatgc       900
     aacaatataa agggtatcct tactctataa ctgtatatta aaatgacaaa accatgaaat       960
     aaaattgata attaaagcaa taatgaaatt catgaagaaa tatacatata tgtaacctat      1020
     accaacatat agcctaatac gcaaatactt tgcaaagaac acactcacaa gcaaatttga      1080
     agatacaaaa agaaacacat ctttgctata accttgtatt tctaatatac tggtctcaaa      1140
     acacaaaaag gttacctaaa ggtgagagac aagatctttt cataacactt accatctaac      1200
     ttatataacc gggcactgtg gctttgtaat gatgggacat tgaccttgca tttaacactg      1260
     gagaatatac ttcagtgatg gtgctgcttc gcagtataat aattacaaga acctcagaaa      1320
     cctaacttac catcaagaag attttggtat tgaagcagaa tggcactttt ttgctatgtg      1380
     ccatgggaag agcccctgtg atggtattgg agggactgta aaacgcctag ctagaagagc      1440
     cagcttgcag gctacatttc catccaatta catcttgaca ccagaaaacc tgtatacctg      1500
     gtcactcaac aaaatccagg gcattattat gttctttgtg tcttcacagg agatcaagtc      1560
     atacaaaggt tttttggaag gcatatacag tgcagtgaag actgttccag gaacacggtc      1620
     acaccatgca tttctagtca ttgctactaa caccattcta atgaagaggc tttcaacaga      1680
     tgcaaatggg accactgttg ctatgggaac tcctgaaaat tcttcatttg aacacttcta      1740
     agtggggcag tatgtggctt tcagatatga tgaaaagtgt tacataggtc acatttccca      1800
     ggtatcccat gaatttagag atgttgaaat tatctgtatg tctcctgctg agtcacaatt      1860
     attaaaatgg cccaatagga aagacatagt ttgagtcccc ttctccagtg ttatatgcaa      1920
     ggtcaatgtc ccatcattac aaagccacag tacccggtta tataagctag atgataattg      1980
     ttatgaaaag atcttgtctc tcacctttag gtaacctttt tgtgttttga gaccagtata      2040
     ttagaaatac aaggttatag caaagatgta agtgtttctt tttgtatctt caaatttgct      2100
     tgtgagtgtg ttctttgcaa agtatttgcg tattaggcta tatgttggta taggttacat      2160
     atatgtatat ttcttcatga atttcattat tgctttaatt atcaatttta tttcatggtt      2220
     ttgtcatttt aatatacagt tatagagtaa ggatacccct atatattgtt gcatttgtgc      2280
     acccaagctg ataaaagtta aatataacat atttattaag taaatgctta ataactgttt      2340
     tcagctatca ctattataca gttctgtcct tcaggtcaac catatacagt ttgagaacac      2400
     tgtttcaagg aatacccatg gttttaattt tctaataccc agtagtgctg aaaattaatg      2460
     atacacgtat atggcatttt catgttattg tttatctatg aagtaagtga gttaggatat      2520
     tcttctttgc acctaagatt gctaccaaat atgtaaacat ttcagcaaaa aatcaagttc      2580
     agattcaact gtctacgtac ccatccagga ctttgaagtt catcaaawtc gaccattttt      2640
     cctgatggag tcaactttaa ctgaaagtaa gaactattaa atgcaatgca atatgctttc      2700
     cattattttt tataattaat actaggactg aagagctaca gtaccaaaat tgagggctgt      2760
     actgttttca taggcaagtt ttaaatcgtg aatttaaacc gcagtgtgaa aaaagtgtat      2820
     ttttcaacat ttttcataaa caatctaaat gatgtttctc actttttata tcatatatca      2880
     acttagtgct ctacatatgt gatgcataaa aaattgaggt ctataggtca actcatcact      2940
     aagcagtagc cctctgaaga tggggatttt ggtgcccgac tgttgatcgc atacacacct      3000
     ttcagccttc aaacataatt ttctcaacaa tggttggaga taggacagtg atatttggta      3060
     gtttttctat taagacatgt aggtacccat gtaccaaata tgatcaaatt ctgaaatggt      3120
     caccttatca ccccccgtga gtttccatgg aatgaccc                              3158
//
ID   Sola2-12_LMi repbase;    DNA;    INV; 2746 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 20.01, Created)
DT   02-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2746
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 94-94 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(541..732,751..1413,1218..1754,1997..2365)
FT                 /product="Sola2-12_LMi_1p"
FT                 /translation="MCQNIPVFKVMYLKMDTYHIIFINTIQQSTFHSIRKT
FT                 DFHFGVSLGKVQKFRLKISNLCRSKASAFSVECKLLRLVSNSCSSKESSFT
FT                 AFSPFVALYVVKWHGESVFHCTISDCLRHDTVAVHVFLTYLINSLKCSFKE
FT                 IKHIHYFSDGSAAQYKNFKSFLNLCHHKNDFGITAEWNFFGTSHGKSPCDG
FT                 IGGTVKRLAARASLQRPIDNQILTPTDLFEYCKKMCMALNLFILKKKLLNM
FT                 QKLIRKNVLRMDVQCLVQEIITILCQLMKSDFRFIEYQMIHCLLILQKNVH
FT                 GIEFIYIKKEIIEYAKIDQEKRFEDGCTVSGTRDHHHFVPIDEKRLQIHRV
FT                 SNDSLSFIANVNRYAKVATKHVAITELQPGQYVACVYDGKWWIGNICEVSC
FT                 EEKDALINFMHPHGAAQSFHWPARRDICWIPEQQIIAVITVPAASMIGRQC
FT                 SLPEAIVLDISNKFKAFTNWHSHHEPTQEFFSNYKKVNSLGEIFAPYPKRH
FT                 QNENTFFNRMKCTLLNGVNENNVVGVHFEIHDFEHGYILTHSWFLAYSQDR
FT                 STVIKHTSQVQIGDIVNTQTDNSLTKDQVCSAVSPLLMPR"
XX
SQ   Sequence 2746 BP; 839 A; 537 C; 560 G; 810 T; 0 other;
     gggtcattcc acgtcaagtg tcccagctta gacgaatctc ccagctcgac catcttcaat        60
     tttgatgaaa tttgtacagt atgtacctga gggcccgaca tgaacgtatg caaagtttca       120
     ggctcacctg taacttggtt cacgtactag agccattttt gtgaagacca cttttaccga       180
     caccgaaaag tcgcgaagaa atcttcaagt ttagcattcc actgttccta atgtaaaaga       240
     gcaagaccct tggttcttgg tatagtggta caactttttg tgctctacac acaaatgatg       300
     cagatagagt tcagaaagca atgcatttgg cataatctca gttcaaagtg ggcaacaaat       360
     catgtagcga gaaatttgcc ccatagttta acgaggcata agtagtggag aaactgcgct       420
     acagacctgg tcttttgtca aactattgtc tgtctgggtg tttactatat caccaatttg       480
     gacctggctt gtgtgtttaa ttactgtgct acgatcctgt gaatatgcta aaaaccatga       540
     atgtgtcaaa atatacccgt gttcaaagtc atgtatctca aaatggacac ctaccacatt       600
     atattcatta acaccattca acagagcaca tttcattcta ttagaaaaac tgattttcat       660
     tttggtgtct ctttgggtaa ggtgcaaaaa tttcgcctaa aaatttcaaa tctttgtagg       720
     agtaaagctt catgatggaa gcatatttga gcattttcag tagagtgtaa actactccgt       780
     ctagtaagta attcttgttc ttctaaggaa agttccttta cagcttttag tccttttgtg       840
     gcactgtatg tcgttaaatg gcatggggaa tcagtatttc actgcacaat cagtgattgc       900
     ctccgacatg acacagttgc agtgcatgtg tttttaacgt acttgatcaa ctcgctgaag       960
     tgcagtttta aagaaattaa gcatattcat tattttagcg acggttctgc tgcacagtac      1020
     aaaaatttta agagcttcct aaatctttgc catcataaaa atgattttgg cattactgcc      1080
     gaatggaatt ttttcggaac aagccatggg aaatcaccat gtgatggaat tgggggcaca      1140
     gttaagcgtt tagcagcaag agctagcctt cagcgcccaa ttgacaacca aatcttgaca      1200
     ccaactgatc tgtttgaata ttgcaaaaaa atgtgcatgg cattgaattt atttatatta      1260
     aaaaagaaat tattgaatat gcaaaaattg atcaggaaaa acgttttgag gatggatgta      1320
     cagtgtctgg tacaagagat catcaccatt ttgtgccaat tgatgaaaag cgacttcaga      1380
     ttcatagagt atcaaatgat tcattgtctt ttatagcaaa tgttaaccga tatgctaaag      1440
     ttgctactaa acatgttgcc attactgaac tacaacctgg ccagtatgtc gcttgcgttt      1500
     atgatggaaa atggtggata ggaaatatct gtgaagtttc atgtgaagaa aaagatgcct      1560
     tgattaattt catgcatcct catggagctg cgcaatcatt tcattggcct gctagaagag      1620
     acatatgctg gatcccagaa caacagataa ttgcagtcat aacagttcca gctgcttcaa      1680
     tgattgggcg gcaatgcagt ttgccagaag caatagtttt ggacatcagc aacaaattta      1740
     aagcatttac caactgaaga attctgtatt atggcttggg aaccacaaag agatccaaac      1800
     aatgcttggg aacctgttgg atacccacat tcaggcttgg aacctgctat atactcatat      1860
     tccggcttgg gaacctgctg gactcccaca ttcaggcttg ggaacctcca gtaaagaaac      1920
     tcacacgtag ctgaccttgc atggctatcg ggcatggccc ctaggcgatg gggctacgag      1980
     tcactgagtc tggtagtggc atagccacca tgaaccaacg caagaatttt tctcgaatta      2040
     caaaaaagtc aatagtttag gcgaaatatt tgcaccttac ccaaagagac accaaaatga      2100
     aaatacgttt tttaatagaa tgaaatgtac tctgttgaat ggtgtcaatg aaaataatgt      2160
     ggtaggtgtc cattttgaga tacatgactt tgaacacggg tatattttga cacattcatg      2220
     gtttttagca tattcacagg atcgtagcac agtaattaaa cacacaagcc aggtccaaat      2280
     tggtgatata gtaaacaccc agacagacaa tagtttgaca aaagaccagg tctgtagcgc      2340
     agtttctcca ctacttatgc ctcgttaaac tatggggcaa atttctcgct acatgatttg      2400
     ttgcccactt tgaactgaga ttatgccaaa tgcattgctt tctgaactct atctgcatca      2460
     tttgtgtgta gagcacaaaa agttgtacca ctataccaag aaccaagggt cttgctcttt      2520
     tacattagga acagtggaat gttaaacttg aagatttctt cgcgactttt cggtgtcggt      2580
     aaaagtggtc ttcacaaaaa tggctctagt acgtgaacca agttacaggt gagcctgaaa      2640
     ctttgcatac gttcatgtcg ggccctcagg tacatactgt acaaatttca tcaaaattga      2700
     agatggtcga gctgggagcc cttggacact tcacgtggaa tgaccc                     2746
//
ID   Sola2-13_LMi repbase;    DNA;    INV; 2753 BP.
XX
AC   .
XX
DT   03-JUL-2014 (Rel. 20.01, Created)
DT   03-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2753
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 15(1), 95-95 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(772..1035,953..1165,1169..1303,1248..1451,
FT                 1370..1636,1696..2004,1956..2141)
FT                 /product="Sola2-13_LMi_1p"
FT                 /translation="MIENAKLGILTNGELASYKQCLAKVLCNPASFHCIMG
FT                 NCSSCPGSDPIKRTLQSALDDNVIGKYHISTMGFSRQVQLRNTAENLIGVH
FT                 LENITFRQWVSVDRCNLEILQKTSSEFIEFFSEKLHTLILHDFLAKQQSSY
FT                 LNEIKENLTVGECVVICDFSNYTFVIQDEAQSYHWSSDHATVHPFVVYYKG
FT                 ENKQTHELLVCHNFCITKERTNKHMSYWYVIISNCLEHNTIAVYCFQKKLI
FT                 SVFKQKFRLIYRRYTTFRMGVQPSTKIKRILTKVQTDIQKIYYFSDGSAAQ
FT                 YKNKKNFVNFAFTKDFGIETEWHFFASAHGKGPCDGVSGTVKRLATKASLQ
FT                 RPYDNQILTPQQLFDWAVEISGRALQSICFHKRDTEVTCFYTNYFKYIKNI
FT                 GKDFFSDKKSTVETVTKSPERLALKDIHGYVTAVYDKKLWLAYILTKDEDL
FT                 DDKVTFLHHVAHHPLTHFLSYIPSPCGPSPSYTFPIKPNILWLSINDILCK
FT                 VNPVTPTGRMYQISGDETVETKKHLTRIQS"
XX
SQ   Sequence 2753 BP; 959 A; 456 C; 463 G; 875 T; 0 other;
     gggtcattcc atgtcaaatc aacacacttt taacatgaat tttacctcat catctcagat        60
     tttgatgaaa cttggcacag aggtagccca catatagatt aagaaaaata cccaattttg       120
     ttaaaatcca tcaatccatt ttgaaaatac gacgatctga agttgtcaaa aatcgccaaa       180
     aagcaccccg cagccataat ttcaaattgt tgtagcaact ctcctaatta agctacaatg       240
     atgggagagg tgtcattttt cagcattttc catgagcttt ccaatgatat acaacacatt       300
     attgatttga gatgaaaact gtgtttcaca tttaaatgaa aattaaattt ttaatttctc       360
     aaaaagcgca tcttcaaaaa tttcaaaaaa atttatatca tgctttagat tattattaac       420
     taataccctg agtatgaaag tgggactgtc atgggttcac acctttataa aatttcaaaa       480
     attcacattt cactaaaaaa atgacatttt tgtaaaattt gtagatttaa gtggacatat       540
     acataattta ccagtaaata tatttacact ttttcataaa tagaacagta atgtctaaaa       600
     gacttatttt gtgcaattta aaagaagcat ataaaagttt caaagctgaa tttccagcaa       660
     tgaagatcgg gttttctaaa tttgcagaac gcaccaaaac actgcatttt ggctggtcat       720
     tgtggaacac actcagtatg tgtctgcact acacatcaaa atgtcaaact aatgatagaa       780
     aacgctaagc ttggtatctt aaccaatgga gaattggcct cttataaaca atgtttggcg       840
     aaagtgctgt gcaacccagc atcattccac tgcattatgg gaaactgtag ttcttgccca       900
     ggaagtgatc caataaaaag aacattacaa agtgcacttg atgataatgt aattggaaaa       960
     tatcacattt cgacaatggg tttcagtaga caggtgcaac ttagaaatac tgcagaaaac      1020
     ctcatcggag ttcattgaat tcttttctga aaaactgcat acactaatac tccatgattt      1080
     cctagcgaag cagcagagct cttatctaaa tgaaatcaag gaaaacttga ctgtgggtga      1140
     atgtgttgtt atatgtgact tctcgtagaa ctatactttt gtgatccaag atgaggccca      1200
     gagttatcat tggtcaagtg atcatgcaac agtgcatccc ttcgtagtgt attacaaagg      1260
     agagaacaaa caaacacatg agttactggt atgtcataat ttctaactgt ctagagcata      1320
     ataccatagc agtctactgt tttcaaaaaa agctaatttc agtttttaaa caaaagttca      1380
     gactgatata cagaagatat actacttttc ggatgggagt gcagcccagt acaaaaataa      1440
     aaagaatttt gtgaactttg ctttcacaaa agattttgga atcgaaaccg aatggcattt      1500
     ttttgcctct gctcatggga aaggaccttg tgatggtgtc agtggaactg ttaagagatt      1560
     agcaacaaaa gcaagtctgc agaggccgta tgacaaccaa attcttactc cgcaacaact      1620
     ttttgattgg gcagtttaaa acattacatc tgtaaatttt gaattttcta cagtagaaga      1680
     gtacattcaa actgagagat ttctggaaga gcgcttcagt caatctgttt ccataaaagg      1740
     gatacagaag ttacatgctt ttataccaat tacttcaagt acatcaaaaa tattggtaaa      1800
     gacttttttt cagacaaaaa atctactgtt gaaacagtta caaaatctcc agaaagactg      1860
     gctttgaaag acattcatgg atatgttact gctgtctatg acaagaaatt gtggttagct      1920
     tatattttaa cgaaagacga agaccttgat gataaagtta cattccttca ccatgtggcc      1980
     catcaccctc ttacacattt cctataaaac caaatattct ttggttatct ataaatgata      2040
     ttctttgtaa ggtaaaccca gtaacaccga caggaagaat gtatcagatt tctggggatg      2100
     aaactgtaga aacaaaaaag catttaacaa gaattcaatc ttaaaacaca gactgtattt      2160
     tgcacacttg gaatgtgtgt gttaacatca aattttaatg tgtatgtaga tacattagga      2220
     aattatgtat atttctgctt aaatctataa attttacaaa aatgtatttt ttttagtgaa      2280
     atgtgaattt ttgaaatttt ataaaggtgt aaacccatga cagtcccact ttcatactca      2340
     gggtattagt taacaataat gtaaagcatt atataatttt tttgaaaatt tttgaagatg      2400
     cgctttttga gaaattaaaa attttcattt aaatttgaaa aacagttttc atctcaaatc      2460
     cataatgtgt catatatcat tggaaagctc atgggaaatg ctgaaaaatg acacctctcc      2520
     catcattgta gcttaattag gagagttgct acaacaattt gaaattatgg ctgcggggtg      2580
     ctttttggcg atttttgaca acttcagatc gtcgtgtttt caaaatgggt tgacagattt      2640
     caacaaaatt gggtattttt cttaatctat atgtgggcta cctctgtgcc aaatttcatc      2700
     aaaatctgag atggtgagta aaaccactgt gttgatttga catggaatga ccc             2753
//
ID   Sola2-1_AAe repbase;    DNA;    INV; 3912 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_AAe.
XX
NM   Sola2-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3912
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1299-1299 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. ~920 bp TIRs.
XX
SQ   Sequence 3912 BP; 1428 A; 561 C; 617 G; 1306 T; 0 other;
     gagcggttcc acgccgtttc gcaaacccga ttatttttgt attttttgaa tcgcctgaaa        60
     atttgcatac agattcttta tgaccaaaaa tgccattatg cactttcaga ccgccatttt       120
     gaacctcgcc ttatttttga gaagggcgta tcggaaaatg catggcaaat ctttaaaaaa       180
     ctgtaactcg aaaacggttt gtccgatcga tttgagatct tctacaaagt tgtaggtatt       240
     gcttaggact atatggagaa aaatatgcac ggtaaaaaaa agttacagat tattttttat       300
     ttcaaaaaca aaattttaaa atcgattttc tccagaaacg cagttttgat tttttttatt       360
     tttggatatg ttttagggga caacttatgt gatttattgc acaatgtttc aaaatggaag       420
     aattatggac aaaaaagtta tgatttttta aaaaattaca gattttgaaa aaaaaaatcg       480
     aaatagagga aaacaataat tttttatgtg attatttgaa agtacagaaa aattgcaatc       540
     gaaaagtact taagtaaatt ttttctaggt tgcatcaatt tcgagatata ctcatattta       600
     tataaaattt tcaaataaaa atagaaaaat aggccctttt caagcatatt tcgtgtttct       660
     ccattccaga aaaaaaatat tttgattgag cgaatcgtag ctaaatcgtt tatcgtttga       720
     tcaaaacatt tatgcttaag tattgaaaaa agagtgcacg gtaaaaaata taaacgatat       780
     tttcaaatga aaatttgaag ctaatagttc ttaaaaaccg caacattgat gtttttaatt       840
     tttggatata ttttgcggtt gttgtaggta ttgtttagga ctatttggaa aaaaatatgc       900
     acggtaaaaa ataatgacag atttttttaa taaaaaaaat taaaatcgat tttctatgaa       960
     aatgcatctg tgatttttat tatttttgga catgttttag gggacaactt atgtgattta      1020
     ttgcacaatg tttcataatg gaagaattat ggacaaaaaa gttataattt tgaaaaaaaa      1080
     tacaaatttt gaaaaaatcg aaataaagga aaacaatatc caactacttt caatattgcc      1140
     gaggtcatgg acggttcaga aaataatgga tacattcgat acatccaggt atttggcaac      1200
     gcaagctaaa cagtcgttag aaggaacaag taaatctcgt acatctttcg ggctaagtaa      1260
     tgtagcaaaa gaaattgtag taaactttta cgaagatgat gaaactagcc gagcgatgcc      1320
     tggccaacgt gattatgttt ccgtaatgag agacggaaag cggctggcaa ttcaaaaaag      1380
     gttaatgatg actacattaa gagagtcgtt taatcgattt actgaattac atagtggtgt      1440
     tcaaatagga ttttcatctt ttgcaaaatt gagaccgaag aattgtaaat tgttaactag      1500
     ctctggaaca cataatgtgt gcgtatgtac tattcacgaa aatgttaatt tgataatcca      1560
     tagtttaaag aaatataatt tactgcatga tttaattttt tttactgata gtttattatg      1620
     cgaaacaaaa acagtggatt gcaccttacg ttgttgcgaa aaatgttcag attctactac      1680
     ctttgaacga agcttgttat cagaaatcga agagaatggc attgacgaat tacaatttga      1740
     acagtgggtc acaaccgaca ggtgtgatat tgaaactttt ttaaagcagc ctgatgaatt      1800
     tgtatcatat tttactcgta aattggagaa actaatacct catgatttca tcaaaaaaga      1860
     gcaagctaca tttttaaata acacaaaaaa acaatttgat agaaggtgaa tttgtggtaa      1920
     tttgtgattt ttcggaaaac tacacattta ttcttcaaga tgaagttcaa agccatcatt      1980
     ggaacgctca gcaagctact ttgcatccgt ttgtaatata ttatcgtcaa gatggcaaag      2040
     tcaatcattt aagttttgtt gtaatttcag aagatttgcg ccacgattct gtatctgtca      2100
     acttattcat atctaaaatg atagattttt tgcgattgga tcacaaatta actgtcaaca      2160
     agatatattt tatgtctgac ggagctgcat cacagtataa aaataggaag aacttttcaa      2220
     ctctttggca atttaaaatc aaatatgata tagaagttga atggcatttt tttgcaacat      2280
     cacatggaaa agggccatgc gatgccatag gagggacact gaaacgtatg gctaccagag      2340
     ccagtcttgc caaaaacgtg aacatccgat aaaaaatgct aaggaactat atgattgggc      2400
     tcaaaatcgg aaagaagagc agcttacaca aatcttcttt tgttattcaa ctactgagga      2460
     atatgatatc attgcacaag aacttaacca actattttca agtgcaaaaa cagttcaagg      2520
     cactcagaaa tatcactcgt ttatccctat ctctgaaaca caaattgaag ttagacaatt      2580
     ttcgagctgt gacgataaca agaaagtagt tgatataatt aagaaataaa attgcagtat      2640
     ataatataaa aaaaaaaaaa aaaaacaaaa aaaaacaaaa aaaaaacaaa ctccttctcc      2700
     atggttgtac gatcttgccg cgatgagagg gctttaccca ttagccgggc ttagccctgg      2760
     ggaccaaagg tacaccgttg tgatagaatc acatttttaa tgccacgttt agatttaccg      2820
     tgtatatctc ggaagtgatg catctcagct aaattttact tgagtatttt tcgatagaaa      2880
     tttttcatat ttaaaaatat atagttattt ttctgtactc aaaaaaacgc accaaaaata      2940
     tcgttttaca taaattcgtt ttattatttt tttaaataat ttatttttta tccaaaaatt      3000
     ttccgttttg aggcattgtg caagaaatta caaacaatat gctgcaaaac atatccaaaa      3060
     attaaaaaca tcaattttgc ggtttttaag aacaatgaac ttcaaatttt catttgaaaa      3120
     tttcgtttat atattttttt taccgtgcat acttttttaa atactttagt atataggttt      3180
     tgatcaaaca ataaacaatt cagctacgat tcactcaatc aaaataaaat atttctggaa      3240
     tggagaaaca cgaaatatgt ttgaaaaggg cctattttac tttttttatt tgaaaatttt      3300
     atataaatat gagtatatct cgaaattgat gcaacctaga aaaaatttac ttaagtactt      3360
     ttcgattgca atttttctgt actttcaaat aatcacataa aaaattattg ttttcctcta      3420
     tttcgatttt ttttttcaaa atctgtaatt ttttaaaaaa tcataacttt tttgtccata      3480
     attcttccat tttgaaacat tgtgcaataa atcacataag ttgtccccta aaacatatcc      3540
     aaaaataaaa aaaatcaaaa ctgcgtttct ggagaaaatc gattttaaaa ttttgttttt      3600
     gaaataaaaa ataatctgta actttttttt accgtgcata tttttctcca tatagtccta      3660
     agcaatacct acaactttgt agaagatctc aaatcgatcg gacaaaccgt tttcgagtta      3720
     cagtttttta aagatttgct atgcattttc cgatacgccc ttctcaaaaa taaggcgagg      3780
     ttcaaaatgg cggtctgaag gtgcaaaatg gcatttttgg tcataaagaa tctgtatgca      3840
     aattttcagg cgattcaaaa aatacaaaaa ttaaatttaa aaaaaaattc gtcatgttcg      3900
     gtggaattgc tc                                                          3912
//
ID   Sola2-1_BM  repbase;    DNA;    INV; 3705 BP.
XX
AC   .
XX
DT   12-MAY-2011 (Rel. 16.05, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   DNA transposon: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_BM.
XX
NM   Sola2-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3053
RA   Yuan Y.W. and Wessler S.R.;
RT   "The catalytic domain of all eukaryotic cut-and-paste transposase
RT   superfamilies.";
RL   Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1113..3308
FT                 /product="Sola2-1_BM_1p"
FT                 /translation="MVGRSKYSLICSSYMMPRSSRSRLQLSEEQKKKRRRE
FT                 QKKLSMRRARSKLDSVALEERRKKDRERYHRKKEEGLIKTIKDLKPRDQRQ
FT                 LRKMWREKAKLRREKEKIKRTTEQMLHENTPPSSPQPSSSTSSFSRIRSGK
FT                 AVGARNKRRLKAKNEYLINRLIVLERKLAKYRMRLHRIKKGQKRGNTVLVK
FT                 RKIHDFFIDDEHSRLTAGKKETITRRKVKKQIRLLNDTILNLHKIFNNKTG
FT                 LNISYETFRRHRPFWVIFPKTTSRNTCLCRQHANNDYIASALHQAKIISFS
FT                 NATDVARSLCCDNILRVSCLERTCTLCFEKTLDYTVINGNDTILYQRWVTK
FT                 KVPQIIKGNEKLCQKTLKECVRTSHQLLVNKFNISLSTFMQHLANIMNQYK
FT                 AIRYIKQNLSPSQSLLHIDFSEKYSCKYGSEVQSAHFGGSKSQLSLHTCVY
FT                 YSVDSQPPTNLIKTTSICTVSENLRHDPVLICAHLKPVIEKIKLITPDLTE
FT                 LHILSDGPATQYRNKTMFHMLANYVSKISNVETIVWHFSEAGHGKSAPDGV
FT                 GGCVKRTCDKAVANGQDISGIDSFVDCVKGTCKGIDIIRINNDVSDIQKIA
FT                 DANKVRPFKGTLKIHQITWSSKSPNIIHCRRLSCLLCAPHIRCTHFKIGQI
FT                 QIEYISRDTKESSPTISSSILSRTGTPRPVSSIDTASASTVTGPRTPSPLE
FT                 SFLNTPSPELTTRIVRQPLTPRKQNIVYTDSG"
XX
SQ   Sequence 3705 BP; 1287 A; 671 C; 623 G; 1124 T; 0 other;
     gggtcataca catacataag ttcagggtgt atgttgttta aaaagaatgg attttattca        60
     aattaaatta tatcgggaca tgaattacag ttaccatttt aaatacaaat gataatcaag       120
     caaaaaatta ttaaattacc tgtgtaactt attttttagt ttcctattat ccctttctgt       180
     ggactgttcg caaaggcagt tgctacattt cgatatcatt tattgttgtt tggtgagagt       240
     tatcgtataa taaaatgcaa atatatcttt agtatatatg tcaaatattt aaaaatatgc       300
     atataattat tataaataga ttaatttata ataaaatttt aaataaacat ttagttacac       360
     gcaaccgcat cacttctgtg gacttaaaat ttcgccaaaa aaatcaatat ctactaaaag       420
     tactactcac cacatttttt ttatactggc cacattataa agctagcatt ggccattttg       480
     gatacagcta ctgagcgttg gcgatcgttc ggaatatggt ttataaattc agtggtgatt       540
     tcgtaaaaga tcggtagaac ttttctgttc ctgatatatt tcggtaagta attattgatt       600
     tcaacaatta tcacgtagcc gtatggccgt tcatggagta atttcggaaa tgtttttgtc       660
     ttattttcta accttaaaaa ctaaaagagc attgtgattt ttttattgaa tgtcctttct       720
     gtggacccct tttatgtgga cttgaatgtc cacgcgaaag acaatgtctg cagaaaatat       780
     cacattattg atttcaaaac taaaacactg tcttacttat ctcttaacta gatgacgttg       840
     actcctttgg tcgtgcatgc tattaaatct acataacatg aattttaaaa gaggttgtct       900
     tgtattttgg ccaatgccaa cacgaaagaa agtgtccaca gaaaatcgtt cttaagtttt       960
     ccaactgatt cagcagcttg tttgtaaacg taaacaatgt gcattgtgta tcatcggtag      1020
     ctgatttata tcccctgcta gacctctgct ccaagacacg cttcttgcgt ataaactaaa      1080
     agggtttggc ttatttgtat ctattgcatg gtatggtagg tagaagtaaa tatagtttaa      1140
     tttgttccag ctacatgatg ccacgttcaa gtagatctag gttacaactg agtgaagaac      1200
     aaaagaaaaa acgtaggcgt gagcaaaaaa aactaagtat gcgcagagct agatcaaagt      1260
     tagattctgt tgctcttgaa gaaagacgca aaaaggaccg agaaaggtat catcgtaaaa      1320
     aagaagaggg gctgattaag accattaaag acttgaaacc ccgagaccag cgacaattac      1380
     ggaaaatgtg gcgagagaaa gcaaaactta gacgtgagaa agagaaaata aaaagaacga      1440
     ctgagcaaat gttacacgaa aatacacccc cttcaagtcc acaaccatca tcttcaacat      1500
     catctttttc acgaattcgg tcaggaaaag cagtaggtgc acggaataaa cgaagattga      1560
     aggctaaaaa tgaatattta ataaatagat taattgtttt agaacgaaag ctagctaaat      1620
     acagaatgcg tctacacaga attaaaaaag gacagaaacg aggtaacact gtactagtca      1680
     aacgaaaaat acatgacttt tttattgacg atgagcatag cagactcaca gcaggcaaaa      1740
     aagagactat cacacgacgt aaagtaaaaa agcaaatacg tctgttgaat gacacaattc      1800
     tcaatctaca caagatattt aacaataaga cgggtttaaa catatcatat gagacatttc      1860
     gtagacatcg tcctttttgg gtgatatttc ctaaaacaac ttctagaaat acctgtttgt      1920
     gtcgtcaaca tgccaataac gattacattg ctagcgctct acatcaagct aagataatat      1980
     cattttctaa cgccactgat gttgccaggt cgctttgctg tgataacatt ctgagggttt      2040
     cttgtcttga acgaacatgt accctatgtt ttgaaaaaac tttggactat acggtcatca      2100
     atgggaatga cacgattctt taccaaagat gggtcactaa gaaagtgccc caaataatta      2160
     aaggcaatga aaaattatgt caaaaaacac tcaaagaatg cgtcagaact tctcatcaat      2220
     tacttgttaa taaatttaat ataagtttgt cgacatttat gcaacatctt gcaaatataa      2280
     tgaaccaata caaggctatt cgatatatta aacaaaactt atcgccatca caaagtttac      2340
     tgcatattga tttttcagaa aaatattcct gcaaatatgg atcagaagtt cagtcagccc      2400
     actttggtgg atcaaaatca caactctcgt tacacacttg cgtttattat tctgttgatt      2460
     ctcagccacc aacaaacctt ataaaaacaa catccatttg cactgtctcg gagaacttac      2520
     gacacgatcc tgtactcatt tgcgcccact tgaaacccgt aattgaaaaa attaaattga      2580
     ttacaccaga tttgacagag ctgcatatat taagtgatgg acccgctact caatatcgta      2640
     ataaaacaat gttccatatg ttagcaaact atgtgagcaa aatttcaaat gtagaaacta      2700
     ttgtgtggca tttcagtgag gctggacatg gcaaaagtgc tcctgatggc gtaggtggct      2760
     gtgtaaaacg cacatgtgac aaggctgttg caaatggcca agacatatca ggtattgaca      2820
     gttttgttga ttgcgtaaaa ggcacctgta aaggcattga cattattcgt attaataatg      2880
     atgtatctga tatacaaaaa attgccgatg ctaacaaagt acgccccttc aaagggacct      2940
     taaaaattca ccagatcaca tggagctcaa aatctcctaa cattattcac tgcaggcgac      3000
     taagttgctt attgtgtgca cctcacatta ggtgtacaca ttttaaaatt gggcaaattc      3060
     agattgaata tatttcacga gatacaaaag aatcttcgcc tacgatatca tcatctattt      3120
     tatcaaggac gggtaccccc agaccagtat cttctattga tactgcatca gcgtcaaccg      3180
     tcactggacc aagaacacca tctccgctcg aatcgttttt aaacacaccg tctcctgaat      3240
     taacaacgag aatagtccgt caaccgctaa ccccacggaa gcaaaatata gtatatactg      3300
     actcaggatg actcagcaac ccccaaaaaa tccagattcc atacattctt tgataccagc      3360
     gacacggagg actcaattcc atccccaaaa aaagttaagt gtcagtcgct ttttgattat      3420
     agcgatgaag aaaaatttta aagtgttttt tattttaata ttaataaagt actgtttata      3480
     cataagtata ttttttcaat tttgattctt ttctgtacga gtctgtccct tctgtggtca      3540
     agaaaaaaat taaaaaccct ctatttcagc aaaacctgaa aaacgatctc gttttatatt      3600
     ataatttaga tactatgatt aataactaat aaatgaaact gattttgtaa aaatacgaac      3660
     gatgtttttt tttccaaaaa ttttaccttg ttttgtgtat gaccc                      3705
//
ID   Sola2-1_DTa repbase;    DNA;    INV; 3148 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   25-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3148
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4699-4699 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           607..2442
FT                 /product="Sola2-1_DTa_1p"
FT                 /translation="MKNVDGLAFPCHLLYIIIFVLFTTNFAIEEKALLLDT
FT                 FKIFKMEKKEKNRASARKYREKLSLNPDRLEKFKEKDKSRKREYRLKLKKM
FT                 METDPELHLKKKEKDKLRQRKLREKKKNMAIDFHTAYRSKQSLGKAVKKME
FT                 KSLPNDMEKKKAVLEAVGKKYLSCNRIEDRAQTSADFQKFSMLRDFYLKDD
FT                 ISVQAAGRKHTLNLNGKFVAKRFMILTVSEAYEIYKKESKSPDLVSKSTFF
FT                 QHRPPEVQLISKLPHNMCVCMYHANIGFLLEGCTKVIPSFPRVFESLLESI
FT                 CCNIKNEECMLNKCLRCVKDIVEELIPISYLKKIDEDIVWKKWRKVDDRLA
FT                 LTMTTAPFSVLLDEFQALLPQFKTHFYIKRSQQSYFEAKKANIDSREVVIQ
FT                 IDFAENYRLISQNEVQSAHFNYKQVTIFTCVAWLCDKTLSFGIISENLSHN
FT                 KFDVVCFLSKLLKVIKEKAGTFENIFIFSDGSSSQFKNKFIVRSLVDFVYY
FT                 FGCVKIEWNYFATSHGKGAVDGVGAVIKRKVWQVTKSQNKILSSPFEFFQC
FT                 AQENLHGINLIYIGAKEVEEFSLPLQEKWKNVAQIPGIRKIHYASSNRELD
FT                 IFVGVTAFSTKNKI"
XX
SQ   Sequence 3148 BP; 1117 A; 497 C; 556 G; 978 T; 0 other;
     gggcatttcc aggaaaaagt caaccaaacc ccaaatatta aatgttggcg gaaaattttc        60
     ttttttggtt taaaaatagc attggtatct atattttgta aatcaataac atttccttcc       120
     aaattaattt tttacacgaa gatatgcggc tttcaaacac gagcaacaca tactgtatat       180
     ctcagcaaca ttttgttgcg tttttgtaat attgctacgc cttctgtgga agtctaaaga       240
     tcaagcaacc aatactataa attagtttaa ggcaaatgct atcaggaaaa aattaagact       300
     tctttaatat taatggatta tatgtcttaa ttgaagtttg ttttttaaca tttttaatgt       360
     cgcgtccgta atcaaaaaac caaatttttt cttttcactc gatcaatttg cgacacctat       420
     aaaccagctc ttatgcctaa agcaaggata gttggaacaa attaattata attttttgaa       480
     aaaaaaatta gcgcgttgat atttttaaag aaattttaaa gtctgtcgcg tccgtaattt       540
     atattttgta tttccaaaaa acaattgatc ataatttttg tgtagctaat tgttttattt       600
     gctgctatga aaaacgtcga tggccttgct tttccttgtc atttacttta tataataata       660
     tttgtattat tcacaacaaa ttttgctatc gaagagaaag cacttctttt agatactttt       720
     aagattttta agatggaaaa aaaagaaaaa aatagagcta gcgcgagaaa gtacagggag       780
     aaattgtctt taaatcccga tcgtttggaa aaattcaaag aaaaagataa atcccggaag       840
     agagaatacc gactgaaact aaagaaaatg atggagacgg accctgagtt gcacttaaaa       900
     aaaaaggaaa aggataaact ccgccaaaga aaacttcgtg agaagaaaaa aaatatggca       960
     atcgactttc atacagcgta taggagtaag cagtccttgg gaaaggcagt aaagaaaatg      1020
     gaaaaatcgt tgccaaacga catggaaaag aagaaggctg ttttagaagc ggtagggaaa      1080
     aagtatttaa gttgcaacag gattgaagat cgagctcaga cgtctgctga ttttcagaaa      1140
     ttttcaatgc ttagagactt ttacctgaaa gacgacatta gtgttcaagc tgcgggcaga      1200
     aagcatacct taaaccttaa tgggaaattt gtcgcaaaac gtttcatgat tttgaccgtg      1260
     tcggaagcat acgaaattta taaaaaagaa tcgaagtccc cagatttagt gagtaaatca      1320
     acatttttcc agcacagacc accggaagtt caactaatat caaagctgcc tcataatatg      1380
     tgcgtgtgta tgtatcatgc taacattgga tttttgttgg agggatgtac taaagttata      1440
     ccttccttcc ctcgtgtctt tgaatcgtta ctggaatcta tttgctgtaa cataaagaat      1500
     gaagaatgca tgctcaacaa atgcctgaga tgtgtaaaag atattgtcga ggaacttatt      1560
     ccgattagct atctcaaaaa aatagatgaa gatatagtgt ggaaaaagtg gcgtaaagta      1620
     gacgacaggt tagcattaac aatgacaact gctccttttt cggttctgtt ggatgagttt      1680
     caagcgcttc tacctcagtt taaaacccac ttttatataa aacgatctca gcaaagctat      1740
     tttgaggcta agaaagcgaa tatagattca agggaagtag tcatccaaat tgattttgcc      1800
     gaaaattaca ggctgatctc tcaaaacgaa gtccaaagcg cacattttaa ctataaacag      1860
     gttacgatat ttacttgcgt agcttggctt tgcgacaaaa ctttatcatt tggaataatt      1920
     agtgaaaatt taagccacaa taaatttgac gttgtctgct tcttaagcaa acttttaaaa      1980
     gtgatcaagg agaaagccgg cacattcgaa aatatattta tattttctga tggtagcagc      2040
     tcgcaattta aaaataaatt tatagtccgt agtttggtag attttgttta ctattttgga      2100
     tgcgtcaaaa ttgaatggaa ctattttgcc acgtcccatg gaaaaggagc agtggatggc      2160
     gtaggagcag tcattaaaag aaaagtttgg caagtaacta agtcccaaaa taaaatatta      2220
     tcaagtccct ttgaattttt tcaatgcgct caggaaaatt tacacggaat aaaccttatc      2280
     tacattggcg ccaaggaagt ggaggaattt tcactaccac tacaagaaaa atggaaaaat      2340
     gttgcacaga ttccaggaat aagaaaaata cactatgcat ccagtaacag agaattagac      2400
     atttttgtgg gtgtcacagc cttttcaaca aaaaacaaaa tttaatataa tatactaaac      2460
     gtgcaacata attcgtaaat aaacttatta tttaaagata ggtatatatt ctttagcagg      2520
     tgtattttga ttaaatttct gcgtttacta gaaaaattta atttaattct aaccacttag      2580
     tcacatagct ttcatagaac gagctatata aaaactatgt ttcaattaaa aagaggtgga      2640
     taacgctaaa atattttaac caaactttaa agtagggact ttagtaacac gtaaaatagc      2700
     tctgcaacat tttgacaaaa taaaaagttg caatattttg ttaagtagca acatgtcgcg      2760
     tccgtaattg tcgcgtccgt attcttgcac tagttttaga aaaaaaaccg ctgaatgttt      2820
     tgccaccgaa cttgctttga tgtgcgtggt tactcagcag gtatactgga aaaaaaattc      2880
     aaaaaaattc gccctctagt ttcgcagaat ttatggtttt tcgaaagttt tcaaaattgc      2940
     agttctattt ttgtcgcgtc cgtatttcac ttatttaatt ttatttctaa gaactggctg      3000
     gacagataat cttaattttt ttagcataaa tacaagagcg tctaagctat ccaacaaaaa      3060
     attaaaaagt aataaatgta cactgcgtca ctcttatttt tagagtttaa gttgaaaaaa      3120
     tgtcgcgtcc gtcaccctgg aaatgccc                                         3148
//
ID   Sola2-1_LHu repbase;    DNA;    INV; 3714 BP.
XX
AC   .
XX
DT   30-SEP-2011 (Rel. 19.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_LHu.
XX
NM   Sola2-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3714
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 379-379 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~500bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1011..2921
FT                 /product="Sola2-1_LHu_1p"
FT                 /translation="MSSIHGDRCCNPYNVEGHRGKDLRRISSVIKRLFPKF
FT                 PDNAKICAACRKMKYPRMNEDTHVSSSLDKTFDNCTHDTEQNISVSSGASS
FT                 LSFSGIECNIKSQREIELEDMLSGLKEKFSTLEINDPLRLTILTVVPDAWS
FT                 LSQISREFNCSRYFAKKARELKASKGVLAETTAKNGKPLPESTVTRIKDFY
FT                 NSDENSRIMPGMKDMVSVKNDEGRDLIQKRLLLSDLRGLYDIYSKCHPDCH
FT                 VSFSKFAQLRPKHCILAGANGTHSVCVCTIHQNCKLMIDSVNLNNLTKDSN
FT                 VILHDYKDCLRQIVCKNPDENCYIGECSKCPGIIELKKHLKELLDEKGIHH
FT                 IQFSVWTTTDRSTLQTQILPSSEFVDEFCDKFIILKPHSFIAKEQSRFYQE
FT                 RKENLKKGEVLAVLDFSENYKYVVQDASQAFHFNNSQCTVFPVVCYYKKEL
FT                 ELEHKSFIFLSDSTLHDTAAVYTVQKMLIPELKIIIPELRRVIYFSDGAKQ
FT                 HFKNKYQMMNLMHHEEDFGVAAEWNYHATAHGKGASDGVGAVFKREAMRAS
FT                 LLSKPNDAILSFEKLVDWAQKNSKSISILSYNDKEHQKTKRFLKKRFDVAP
FT                 PVPEILRNHCFVPINKEMVIKRYSNAGNSSTFSYQDFKK"
XX
SQ   Sequence 3714 BP; 1248 A; 603 C; 640 G; 1223 T; 0 other;
     ggggcattct ttctcaactt tacacccatg ctgcccattt tctatttgat ctaaaaattt        60
     ttgaaaaaat cttaaaattt acagaaaaat gtaagctttc caatggcgcg tggcaaaatt       120
     atcaaattca attggatcat acttaaaatt tcagaaaacc gaaaaaaata ataaaaacgg       180
     taattattca agtgtagcga ttattcattc gacgtttttc tcttccaatt aacactttcg       240
     agtactctgt ttatctgtgc actgtcacat gagtctaaac taaaatggcg gatccaatat       300
     ggccgccaaa aatttaaaaa atttaagaaa ttaacggatt tttgtaaaac ttaataccaa       360
     agagtttttc tgtatgctga atacaaatct caaatcggat tttgaaaatt caaaatggcg       420
     gatctaatac gaccaccaaa aatattgaaa aatttaagaa gttaacggat ttttataaaa       480
     cttggtatca ggagtatatt tgggacgcag attttaaaat ttcatcatta aattcgtatt       540
     tatcgaccta tttggtctaa agattatcga aaaactatta aaatttataa caaaattcaa       600
     gtcctccatg ggcgcgtggc aaaattatca aattcaattg gatcattatt ttttttctga       660
     gcctagtcaa aaaagtttca taaaataaga tcgtgaaatc cattttgtac acattcgaga       720
     gagtttctct accgcgatat tatcgccatt cattacaaca ttttaacgtt aaaaaacgtt       780
     tcattgtgat tccgtaaatt tctaaacgct ttaatatttg gatttgtata tccgactccc       840
     atggttctgg gcttttttgt gctttgagcg tttctctgag gttttcttcg aacagttctt       900
     ttcagagcta cttttaaccg ttcttttagg actgctctca gaacaatact acagaaaatt       960
     ctattatctg tactattttt gatcgtgaat cttagaattt gattttgaat atgtccagta      1020
     tacacggtga tagatgttgc aatccctaca atgtggaagg tcacagaggg aaagatcttc      1080
     gacgcatttc gagtgttatc aaacgattat tcccaaaatt tccagataat gctaaaattt      1140
     gtgcagcatg taggaaaatg aaatatcctc gcatgaatga agatacgcac gtctcatcga      1200
     gtcttgataa aacgtttgat aattgtactc atgatactga acagaatatt tctgtatctt      1260
     ccggtgcatc ttcattatct ttcagtggaa ttgaatgcaa cataaaatca caaagagaga      1320
     ttgagttgga agatatgttg agtggattga aagaaaaatt ttccactctt gaaattaatg      1380
     atcctttgag attgacgatt ttgactgtag taccagatgc atggagtcta agtcaaattt      1440
     ctcgggaatt caactgttct aggtattttg caaaaaaagc tagagaattg aaagcatcta      1500
     agggcgtttt agcagaaaca actgctaaga atggtaaacc attgccggaa agtactgtta      1560
     cacgaattaa agatttttac aatagtgacg aaaatagcag aatcatgcca ggtatgaaag      1620
     atatggtttc agtaaaaaat gacgagggca gagatttgat tcagaaacgt cttctccttt      1680
     cagacttaag aggtctttat gatatttata gtaaatgcca tcctgactgt catgttagtt      1740
     ttagtaaatt tgcccaactc cgaccaaaac attgtatact tgctggtgcg aatggtacgc      1800
     attcggtctg tgtctgtacg atacatcaaa attgcaaatt gatgattgac tctgtcaatt      1860
     taaataatct tactaaagat tccaatgtga ttttacatga ttataaagat tgcttacgcc      1920
     aaatcgtgtg caaaaatcct gatgaaaatt gttatattgg tgaatgcagt aaatgtcctg      1980
     gtattattga actaaaaaaa catttgaaag aactcttaga tgagaaaggt attcaccaca      2040
     tacagttcag tgtctggaca acaactgaca gatcaactct tcagacgcaa attcttccgt      2100
     cgtcggaatt tgtcgatgaa ttttgtgaca aatttatcat tctaaaacct cattctttca      2160
     ttgcaaaaga acaatctcga ttctatcagg aaagaaaaga gaatttaaaa aaaggtgaag      2220
     ttcttgcagt attagatttt tctgagaatt acaagtatgt tgtgcaagat gcatcgcagg      2280
     cgttccattt taataattca caatgtactg tctttcctgt cgtgtgttac tataaaaaag      2340
     agttagaact tgaacacaaa agttttattt ttttgtcgga tagtacactt catgacacag      2400
     ctgctgtata tactgtacaa aagatgctga ttcctgaatt gaaaataata attcctgagc      2460
     taagaagagt aatctacttt agcgatgggg caaaacagca ttttaaaaat aaatatcaga      2520
     tgatgaatct aatgcatcac gaagaggatt ttggtgttgc agcggaatgg aactatcatg      2580
     ccactgcaca tggtaaaggt gcttcagacg gtgtaggtgc tgtgttcaaa agggaagcta      2640
     tgcgagctag cctccttagt aaaccgaacg atgccattct ttcattcgag aaacttgttg      2700
     actgggctca aaaaaattct aaaagtatta gtatactgtc atataatgac aaagagcacc      2760
     aaaagacaaa aagatttttg aaaaaacgat ttgatgtagc tccaccagtt ccagagattc      2820
     tgagaaatca ctgtttcgtc ccaatcaaca aagaaatggt gattaagaga tattccaatg      2880
     ctggtaatag ttcgactttt tcatatcaag atttcaaaaa gtagggggta agagctcagg      2940
     cgacatcaga atcagaggta tctctagtat caagttttat aaaaatctgt caatttccta      3000
     aattttcaat atttttggtc ttcatattag atccgacatt ttcagttttc gaaatccgac      3060
     ttaagatttg tatttagctg gccgtaaaac tctctgttca aattttataa aactccctta      3120
     cttttaaaaa tttttcaaat tcttagttgc catattagat ccgccatttt gaattttcga      3180
     aatgcgactt cagattcgtt attagcaacc cgaaaaagtc cctgatacca agtattataa      3240
     aaattcgtta atttctaaaa attttcaaaa tgttttggtg gccatattgg atccgccatt      3300
     ttgtattttc gaaagataac tttagactcg tatacagtaa cccgaaaaac cccttgatac      3360
     caagttttat aaaaatcagt taatttctta aattttttaa atttttggcg gccatattgg      3420
     atccgccatt ttagtttaga ctcatgtgac agtgcacaga taaacagagt actcgaaagt      3480
     gttaattgga agagaaaaac gtcgaatgaa taatcgctac acttgaataa ttaccgtttt      3540
     tattattttt tttcggtttt ctgaaatttt aagtatgatc caattgaatt tgataatttt      3600
     gccacgcgcc attggaaagc ttacattttt ctgtaaattt taagattttt tcaaaaattt      3660
     ttagatcaaa tagaaaatgg gcagcatggg tgtaaagttg agaaagaatg cccc            3714
//
ID   Sola2-1_LMi repbase;    DNA;    INV; 3747 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3747
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3300-3300 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           772..3081
FT                 /product="Sola2-1_LMi_1p"
FT                 /translation="MDFKSKLYCCNPFREVSHARVQKNLRNVQEWMINKCP
FT                 NVFLGGKICSKCRKKISEIPTSTADVASVEPGTSREDLSEDEVASDLALDS
FT                 LNSSLQYLGESPVKKKRLQSEKKYPKQKLKKKIASVLEHTYVAQLEKEESE
FT                 NGESEIIAQLKDKFHNSDRMCDKIQILTVLPKSWSIRKTMKEFSASDYMVR
FT                 KAKQLVAEHGILVTPNPKPGKTLCEKTVQRVRDFYCDHDVSRMMPGRKDFV
FT                 SVKENGITVHKQKQLVLHNLKELYSYFKDKYPDINIGFSKFCELRPKHCVL
FT                 ANASGTHTVCVCVSHQNFKLMIEGCKLKALTKCEEHTLPSYKHCVAFVTCN
FT                 PALPACFLGSCSYCPSVTRLTDYLYDLFSKNCIDEITYKCWLTTGRVILEA
FT                 ITKSTDDFIEVFTSRLQQLLAHSFISQQQSHFCKITKEGLKVNEYLVLCDF
FT                 AENYSFTIQDEVQGFHWNNSQATIHPFVAYYRDSSTNEIRHVSYVEISDCL
FT                 QHDTVCVYSFQKNFINFLKCQFSNPKHIYYFSDGCAAQYKNRKNFMNLSYH
FT                 QEDFNVTAEWHFFATAHGKGPCDGVAGTVKRLARLASLKRPNENHILTSRQ
FT                 LFEWCKENIPSCIFHYTSVSHHNEDSAKLKQRFKNTRTIPGTHKLHCVIPV
FT                 NKGLVRTKTYSASSLSREESVIAMANEMLLTDIHGFVACMYDNHWWVAYVL
FT                 QTCEETDEVKVNFLHPHGPSPSFVFPAKPDTCFIRKCDIITRVDPVTPTGR
FT                 TYNLPASDLANINNLVGEL"
XX
SQ   Sequence 3747 BP; 1238 A; 655 C; 714 G; 1140 T; 0 other;
     gggtcattcc atgtcaattc aacgcacctc tcaacctgac cctctcagat ttctttcaaa        60
     tttggtgcat tcaatgaccc agataagaga tggaaaaata ccaatttgca gggctgtatt       120
     acaactgcga agaaagttac aggtctggaa agtttggaat ttgtgcgaaa tttacatgcg       180
     tccgtctcaa cataaaagac tgtaattctg gttctaatta agttacagca atgaaaatgg       240
     taccattgga aagctaatga atagaccttt acactgatat gccacatggc aggtttctga       300
     atatttttat tctaaaggtc attgaccttg acttttgacc ttgaatatct caaaacaccc       360
     catcttcaaa ttttctggaa aaaatatatt ttattgttcc attatgttac tacaaatatg       420
     gtaaatatca agatggcaca ccaaaggcat cattcacaaa aaatattttg tcaacttaag       480
     tacaccatca acatgcagta agcagctatt agcctagatc catttttttt ttctagaaaa       540
     ccagccaata gcagttactt ttattctgac caattctgta atatttctag ctgtgaacag       600
     ctaatcagag agacttttat ttcaaccaat caactgttag cctgttttag tgaacagcca       660
     atcagagaga cttatttaat caccattaga ctgttttatg gctgtgggtt gtttaatcaa       720
     agtgctgtgt acatgtgttg taaagaaaca tttagtaata gtttgtaaaa aatggatttc       780
     aagtcaaaat tgtattgttg caatccattt agggaagtaa gtcatgcaag agtgcagaag       840
     aatttaagga atgttcagga gtggatgata aacaaatgtc ctaatgtatt tttaggtgga       900
     aaaatttgca gtaaatgtag aaagaaaata tcagaaatcc caacaagcac tgcagatgtt       960
     gcctcagttg agccaggtac ttccagagaa gatttaagtg aagatgaagt agcttcagat      1020
     ctggcactcg attctttaaa tagcagcctt cagtatttag gtgaatctcc tgtgaagaaa      1080
     aagaggcttc agagtgagaa aaagtaccca aagcaaaaac tgaaaaaaaa aatagcttct      1140
     gtgttggagc atacttatgt ggcacaactg gaaaaagaag agagtgaaaa tggagaaagt      1200
     gaaatcatcg cccagctgaa agataagttt cacaattcag accgtatgtg cgacaaaata      1260
     caaattctaa ctgtacttcc aaagagttgg agtataagga aaactatgaa agaattttct      1320
     gcttcagatt acatggtacg gaaagcaaaa cagttagtag cagaacatgg tatattggtg      1380
     acaccaaatc caaagccagg taagacatta tgtgagaaaa ccgttcagcg tgtgcgtgat      1440
     ttttactgtg atcatgacgt gagccgtatg atgccaggaa gaaaagactt tgtgtctgtg      1500
     aaagaaaatg gaattacagt acataagcag aagcagctag tgttgcacaa ccttaaggaa      1560
     ctgtattcct atttcaaaga taaataccca gatataaata ttggattctc aaaattttgt      1620
     gagttgcggc caaagcactg tgttcttgcc aatgccagtg ggacccatac tgtttgtgtg      1680
     tgtgtctcac accagaattt caagttaatg attgaagggt gtaaactgaa agcgctaaca      1740
     aagtgtgaag aacacacatt accatcatac aagcactgtg tagcatttgt tacatgcaat      1800
     cctgcactac cggcatgttt cttaggttca tgttcctatt gtccaagtgt gacaagacta      1860
     actgattatc tgtatgatct gtttagtaag aactgcattg acgaaattac atataagtgt      1920
     tggttaacta cgggcagggt aattctagag gctataacaa agtcaacaga tgatttcatc      1980
     gaggtgttta catcgaggtt acaacagctc ctggcacact catttatctc ccagcagcag      2040
     tcacatttct gtaaaatcac taaagaaggt ctcaaagtaa atgagtatct tgttctttgt      2100
     gactttgcag aaaattactc cttcaccatt caggatgagg tacagggatt ccactggaat      2160
     aattcacagg ctacaattca cccatttgta gcttactaca gagactcaag cactaatgaa      2220
     atacgacatg tatcatacgt ggaaatatct gactgccttc agcatgatac agtgtgcgtt      2280
     tattctttcc agaaaaattt catcaatttc ttaaaatgtc agttttcaaa tccaaagcac      2340
     atttattact tttcagatgg atgtgctgcc caatacaaaa acagaaagaa ctttatgaat      2400
     ctgtcctacc atcaggaaga ttttaatgtt acagcagaat ggcatttttt tgctacagcg      2460
     catggtaaag gaccttgtga tggagtagca gggactgtaa agagattagc aagacttgcc      2520
     agcctcaagc gacctaatga aaatcatatt ctgacatcaa gacagttgtt tgagtggtgc      2580
     aaggaaaata ttccttcatg tatcttccat tatacatcgg tttcccatca taatgaagat      2640
     tcggccaagc tgaaacaacg tttcaaaaat acaaggacaa ttccaggtac ccataagctt      2700
     cattgtgtaa tacctgttaa caaaggttta gtaaggacga agacatattc tgcttcttca      2760
     ctgagtagag aagagtcagt gattgctatg gcgaatgaaa tgctgttaac agatatacat      2820
     ggatttgttg cctgtatgta tgacaatcat tggtgggttg catatgtctt acaaacttgt      2880
     gaagaaacag atgaagtaaa ggtcaacttc ttgcatccac atggaccgtc tccgtcattt      2940
     gtgtttcctg ccaaaccaga cacttgtttc atcagaaaat gtgacattat cacaagagtc      3000
     gatccagtga caccaactgg aaggacatac aatctccctg catcagatct ggcgaacatt      3060
     aacaatttag ttggagaatt gtgaggagag atctaatcac ttttcattgc cttttcatta      3120
     aaattgtaat gtaaatggtt cataatacca ttataataat gcaaaccata tttttgtaga      3180
     atattactta tggattgtat gttatcataa tttgtgtttc atatatgtga gttaccttct      3240
     tcatttcggt agtgtattga tgctgacaaa ataatttttt gtgaatgatg cctttggtgt      3300
     gccatcttga tatttaccat atttgtagta acataatgga acaataaaat atattttttc      3360
     cagaaaattt gaagatgggg tgttttgaga tattcaaggt caaaagtcaa ggtcaatgac      3420
     ctttagaata aaaatattca gaaacctgcc atgtggcata tcagtgtaaa ggtctattca      3480
     ttagctttcc aatggtacca ttttcattgc tgtaacttaa ttagaaccag aattacagtc      3540
     ttttatgttg agacagacgc atgtaaattt cgcacaaatt ccaaactttc cagacctcta      3600
     actttcttcg cagttgtaat acagccctgc aaattggtat ttttccatct cttatctggg      3660
     tcattgaatg caccaaattt gaaagaaatc tgaaatggtc aggttgaaaa tgttacttta      3720
     ctgcgttgaa ttgacatgga atgaccc                                          3747
//
ID   Sola2-1_NVi repbase;    DNA;    INV; 3698 BP.
XX
AC   .
XX
DT   15-FEB-2009 (Rel. 14.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola2-like DNA transposon: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_NVi.
XX
NM   Sola2-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3698
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Mol Biol Evol 26(5), 983-993 (2009).
XX
RN   [2]
RP   1-3698
RA   Jurka J.;
RT   "Sola2-like elements from the parasitic wasp Nasonia
RT   vitripennis.";
RL   Repbase Reports 9(2), 486-486 (2009).
XX
DR   [2] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1296..2597,2545..3018)
FT                 /product="Sola2-1_NVi_1p"
FT                 /translation="MSLDESNDSTIHMETLDDSATSLNDSADFDPEKDNRE
FT                 KSQREMELEEMLDGLKDKFSNLSNTDPLRLQILTIAPSTWSARKLAKEFGA
FT                 TRYLAAKAKKIKSQQGILPNTTMKAGKNLPKNTIDEVFDFYTSDMNGRLTS
FT                 STKEFVSVNIEGERVXQQKRLLLLNLSDLYRLFKQSHPDCDIGFSTFAKLR
FT                 PKFCILPGASGTHSVCVCTIHQNVKLMLDAIDFKNLTKDTNLPLSDYRDCL
FT                 KNMSCENPSPKCYIDQYDKCPGTTNILEHIRTLLDDKRISHVEYATWSGTD
FT                 RSTLLKSVVKLDEFLTELDNKLKILKPHSFLSKQQSLFVKEKKENLKEIEV
FT                 LVMFDFAENYCYVCQDASQAFHFNNDQCTVFPAIYYYKEDGELKHKSNVFL
FT                 SNSKKHDTAAVYSIQQQLIPEIKKKSEKSYLRKRWSQATLKKKVKKVIYVS
FT                 DGAKQHFKNKFQIANLIYHKQDFDVIAEWHYFTTAHGKSAYDGIGANFKRE
FT                 AYKASLTAKPNDALLTSEALFNWSRKHFQNINVFYFDEKYHAKMQRKLNRR
FT                 FEAAKAVPEISKQHGFIVDDQRNVCIKRYSKEEGGIQWSMYADN*"
XX
SQ   Sequence 3698 BP; 1375 A; 572 C; 591 G; 1157 T; 3 other;
     cgttgaagct tctagttttt agtactgtat ggcatatgtg aatctttcaa atggcggacc        60
     agtaatgctg ccaaaaggaa gaaactactc aatcaaagcc gttatttgta ttctgattcg       120
     tataaaaata acaaattgct tcttacaatt cacttttttt atgtaattta ggtcgctgat       180
     tataaatcta ttcgtagttt tcaagatggc ggatccaaga tggcggctga aaaatgtaaa       240
     aatcatttta tatcgacagt ttgagtcggg tatgaatata agggttttcg gggtcgctga       300
     ttacgaattt attatttatt ttttgaaatt ccaagatggc ggatccaaaa ttcaataata       360
     cacttttttt aaacaaaaaa aatatttatt tgtaacaaga actaaactaa tctatctaaa       420
     agtatgcgaa tcttacccaa atccttaata ataagcatga atgtaaagta aamattttaa       480
     aatgtttaaa tttgtttact caaattattt agataaatta attttgcaat tttaaattga       540
     aaattgtaat ctacaatact aaaaatgtag gcatacaaat ttcaagtaaa tcgactaaat       600
     taaatgtggc tcaaaaaatt aagcgctatt actttgcatt tttatattta atgttgcccc       660
     aactcattgt tagattaatc tgaaaaatgg tattaaattg cttcaaatca actacggcag       720
     tgtataagca ggcagtgaaa agttaaaatt gtgaaaatag aaagtttaag tgtttgcatt       780
     actattttta cttgctttac gttgatactg ctttgcttta aaagaaattt tccaattaaa       840
     actgtttaat atcgatataa cattgtatgc ggtctatgca aatgttaaat cacagatttt       900
     aaaagctaaa ttttatataa aatgtaattg atttataaaa ataagtatgt aaaaaaggtt       960
     gaattaacta agtatattct tataatagtt gttcgttaat aattttgcag tagttcagaa      1020
     aaagtaaatt acaagctttt gacagaggtt aacctttttt tttaatacga tttcttcttt      1080
     caataaaact acattcttat cacaatgcca aaaagactcc attcggacag atgcgccaat      1140
     ccatttaaaa aacccgacga gcaaggtcac attggtaaat ctttgagact aataccgaaa      1200
     tctatgctag aagagtatct gatttatctg aacatagtaa ggtttgctct aaatgtgtaa      1260
     amaaatttaa agataaaact gatggtaata atagtatgtc cttggacgaa tcaaatgatt      1320
     ctacgattca tatggagact ctggacgatt ctgcaacgtc tttaaatgac agtgcagatt      1380
     ttgatcctga aaaagataat cgagaaaaat cacagagaga aatggaattg gaagagatgc      1440
     ttgatggact taaagacaaa ttttctaatc taagcaacac agatccttta aggcttcaaa      1500
     ttctgacaat agctccatca acatggtctg ctagaaaatt agcaaaagaa ttcggtgcaa      1560
     cgcggtattt ggctgccaaa gctaaaaaaa ttaaatcaca acaaggtatc ttacctaata      1620
     caaccatgaa agcaggaaaa aatctaccaa aaaatactat agatgaagta tttgatttct      1680
     atacaagtga tatgaatgga agacttacgt ctagtacaaa agagtttgtt tcagtcaata      1740
     tcgagggtga gcgtgtamat cagcagaaac gtttactact tttaaattta tctgatttgt      1800
     acagattgtt taaacaatca catcctgatt gtgacatagg ttttagtacc tttgctaagc      1860
     tcagaccaaa attttgtata cttcctggag cttctgggac ccattcggtg tgtgtatgca      1920
     caatacacca aaatgtaaag ttgatgttag atgccattga ttttaaaaat ctaactaaag      1980
     atacaaattt accgctatca gattatcgag attgcttaaa aaatatgtct tgtgaaaatc      2040
     cgagtccgaa atgctacatt gatcaatatg acaaatgtcc tggcacaaca aatattttag      2100
     aacatatacg tacactatta gatgacaaac gcatttcaca tgttgagtac gctacatggt      2160
     cgggaactga tcggtcaaca cttttaaaga gtgtcgttaa attagatgaa tttctaacag      2220
     aacttgataa taaattgaaa attctcaaac cccattcatt tttatcaaaa caacaatcac      2280
     tttttgttaa agaaaaaaaa gagaatctta aggaaattga agttttagtt atgtttgatt      2340
     tcgcagaaaa ttactgttac gtttgtcaag atgcttctca agcatttcat ttcaataatg      2400
     atcagtgcac agttttccct gccatttatt attataaaga agatggtgaa ttaaaacata      2460
     agagtaatgt tttcttatca aacagcaaaa aacatgatac tgctgccgta tatagtattc      2520
     aacaacagtt aatacctgaa ataaaaaaaa aaagtgaaaa aagttattta cgtaagcgat      2580
     ggagccaagc aacactttaa aaataaattt cagatagcaa atttgattta tcacaagcaa      2640
     gattttgatg tgatagctga atggcactat tttacaactg ctcatggtaa aagtgcgtat      2700
     gatggtattg gtgcgaattt caaaagagaa gcttacaagg caagtctaac tgcaaagcca      2760
     aatgatgctc ttctaacatc tgaagcactt tttaattggt ctagaaagca ctttcaaaac      2820
     attaatgtct tttactttga tgagaagtat cacgcaaaaa tgcaaagaaa attaaacaga      2880
     agatttgaag cggccaaagc cgtacctgaa atttcaaaac aacatggatt tatcgttgat      2940
     gaccaaagaa acgtttgcat aaaaagatat tcaaaggaag agggaggaat tcaatggtca      3000
     atgtatgcag ataattaaaa taagtaaata ttaataccga acgtgaaaaa ccggcccttt      3060
     taagggccaa gtgatgtgca agaccgatcg cgcaacctcc tcgtggtgca cattggataa      3120
     cgctaatgcc gacggcacaa aacgagtttt gacataaatt atacatgaag taacaacaaa      3180
     tcttattcct gctattcaag aaataataca ggtaaaaaat tgtgtattcc tataagaaca      3240
     gtagtttcct ttggtagctt agatctgata ccttggaatt tcaaaaaaca aaagcaaatt      3300
     cgtaatcagc aacctcaaaa acacttatac tcatacccaa ctgtaaattt cgaaaaaatc      3360
     gatttttgca ctatttatcc gctatcttgg aatttcaaaa ataaataata aattcgtaat      3420
     cagcgacccc gaaaaccctt atattcatac ccgactcaaa ctttttcaca ttttggatcg      3480
     ccatcttgaa aatttgaaaa ctacgaatag atttataatc agcgacctaa attacataaa      3540
     aaagtgaatt gtaagaagca atttgttatt tttatacgaa tcagaataca aataacggct      3600
     ttgattgagt agtttcttcc ttttggcagc cattactggt ccgccatttt gaaagattca      3660
     catatgccat acagtactaa aaactagaag cttcaacg                              3698
//
ID   Sola2-1_RPr repbase;    DNA;    INV; 1994 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola DNA transposon: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-1_RPr.
XX
NM   Sola2-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-1994
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3332-3332 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 1994 BP; 704 A; 300 C; 321 G; 669 T; 0 other;
     gggtcattcc atgtcaaatc aacacaaaaa aagaccattt ttgacctcac catctcggat        60
     tttcttgaaa tttggcacat gtgtactatt ggtatagact tggaaaaata tgaaatttta       120
     ctgtgatatg tcaactggtt tatgagttac agggctgtaa agttgccaaa aatgggctga       180
     aaaacaggga accccgtgtt tttgaattac tgtagaagct ttcctaattg agctacagac       240
     ttgggattgg tgtcatttta tagcatatat aatgcccttt cctgtgatat gcgacaccat       300
     atgggttagg ataaataaag tttgttaaat ttaaatttaa aatttaaatt ttaaattttt       360
     taaaaagtac atattttaaa attttaaaat taattctatg aatagctagt agtgttatga       420
     atcactgggc aaaatattaa tttgggacga caatggcttc attgttaaaa aaatttaaga       480
     ctaaagctcc ttttcatgga aaatatattt taataaaatt aaagtaataa ataaattgaa       540
     aatagtaata atgaatcaat gaatcataat taataattat taagatttaa aatattgatt       600
     ttgaaatcat ttttagaatt aataattatg attacagtaa ttattcatat taattataat       660
     atattatttt aatgaaatta tgcagttaat caaattatac aaaaataatt caattcaata       720
     tctttgttca agaacagtct tctttggctg agataacagc ctctttaagt tggtttaagt       780
     cggcaaaggg ccttgtgatg gcgtaggggg ttcggtaaag agactggcag ctcgtgccag       840
     tttgcaacga ccctatggaa atcaaatcca aacttcacta caactttttg agtgggcagt       900
     agaaaacatc accaacatag actttgcata ttcaacccag gaagactatg ttgaatctga       960
     gtgtttttta aaaaatcggt ttgctcaagc attggctatt aaaggaacac agcaatacca      1020
     tgctttcatt cccagaagta aatccaaaat attggttaaa aacttttcta tgaactcaga      1080
     agcttgcgaa atggaagttt caaaattccc tgataaacta aaattagccg acatatcagg      1140
     ttatatcagt gtagtctata aagaaactgg tggcttggat atgttttaga gaaaaatgaa      1200
     gaacttgatg aagtaaaagt aacttttctt catccagctg gaccctctaa atcatctcgc      1260
     atccaagaaa tgccgatatt ctttgggtct cagtagtgga tgttttgata aaaattgatc      1320
     ctgtgactct gactggaaga acttacatat gtcctactag aaagtgatgc atgtcaaaca      1380
     aatgaagcct tttcaagctt aaaataataa agagatccta ttacttaaca gtatgtttta      1440
     ctttggactt attagtggaa ttattattag cattattgta ttaacatgaa ttcagagttg      1500
     aattaatcgg attggagctt tagtcttaaa tttttttaac aatgaagcca ttgtcgtccc      1560
     aaattaatat tttgcccagt gattcataac actactagct attcatggaa ttaattttaa      1620
     aattttaaaa tatgtacttt ttaaaaaatt taaaatttaa attttaaatt taaatttaac      1680
     aaactttatt tatcctaacc catatggtgt cgcatatcac aggaaagggc attatatatg      1740
     ctataaaatg acaccaatcc caagtctgta gctcaattag gaaagcttct acagtaattc      1800
     aaaaacacgg ggttccctgt ttttcagccc atttttggca actttacagc cctgtaactc      1860
     ataaaccagt tgacatatca cagtaaaatt tcatattttt ccaagtctat accaatagta      1920
     cacatgtgcc aaatttcaag aaaatccgag atggtgaggt tcagaccccg tgttgatttg      1980
     acatggaatg accc                                                        1994
//
ID   Sola2-1_SIn repbase;    DNA;    INV; 2983 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola2-type retrotransposon sequence - a consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-1_SIn.
XX
NM   Sola2-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2983
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 348-348 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. ~140bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           741..2492
FT                 /product="Sola2-1_SIn_1p"
FT                 /translation="MSAKSRTDRCMNPFKKLGEKGHCGKDLRVIPKFIRDK
FT                 FPEIPTNSKICCACRKKSRTEYVDMSLDESNDCVTNMECDGSSLTTDIDNS
FT                 EISYNEDNIRSPREIELEEMLDGLKQKFSTLKHNDPLRVRILTIAPSSWSV
FT                 RKIVKEFGASRYLAKKSKELKFNHGVLADTTKRVGKVLPQTTVEKVIEFYN
FT                 SDINSRIMPGMKNAISLINNNKRIIVQKRFLLLNLKELHALFKESNPKYDV
FT                 SFSTFAKLRPRNCILPGASGTHSVCVCTIHENVKLMIDAIDVRKLTENIDK
FT                 PLSNYKDCLNEIICKESNPDCYLDKCDQCPGTTELSTKLSKLLDDSCISHV
FT                 QCSLWTGTDRSTLLTQQLKVDEFVNELCNKLQILKSHSFIAKQQMLFISEK
FT                 KENLCEDEVIVMFDFSENYSYVCQNASQAFHFNNDQCTVFPVIYYYKENSE
FT                 LKHKSNVFLLESLKHDTAAVYTVQTLLIPEILKNVKNLKRVLYVTDGAKQH
FT                 FKNKFQIANLVHHKHDFNIQAEWHYSATAHGKSAYDGIGATFKREAYKASL
FT                 VAKPQDAILTSQVLFNWAKKHFKNIKIFYXKKLIMRR"
XX
SQ   Sequence 2983 BP; 1088 A; 475 C; 507 G; 910 T; 3 other;
     aagattactt aaaattactt tgaaacttat attatccctc ataacatttt ttgcaattgc        60
     aaacgttggc aacagattag ttagtagaaa aaccgcaaac gggaaacata ctttgttata       120
     gtcaattatg gtagcacact tttgttaata tgcaataatc ttggtaaaat atatgacaga       180
     gtggttaaca gtaagcaaat gtcgaacata ttgatgacag actgttaaca aacgccaagc       240
     agttttttta ttgcaaatag tgttagcaaa catcacgtaa aaatgcagca gcatctgttg       300
     atcaaaatac ataagattga cagtcgatag cgaacaagtc gatcgaatat attgacgaca       360
     tattcactgc atgaacccaa aagatctatc tttaaagtcg tacacctgcg agtagtacgc       420
     ggtatcgccg ctagatggat gtggcagtgc ttatatctcg tacataaaaa actacacata       480
     tggaataaaa ggcgcagcaa tattttttca tttttcaaat tttctcgtct tgttttggat       540
     tagagaacct catcacaata catttattag tcacagaatt tatcgagtta attaattata       600
     gtttgcaatt cagtcaatca ataagttttt ttatgttaaa tagaatattc aactcacgtt       660
     tttgtctctt ctttatcgac ttttactttt tctacaatta ttccaattat ctcttacctg       720
     taccacatcc aaaataaaaa atgtcggcta aatctcgtac agatagatgt atgaatccat       780
     tcaagaaact tggtgaaaaa ggacattgtg gtaaagattt acgagtgata ccaaaattca       840
     ttcgggacaa atttcctgag ataccgacta attctaaaat ttgttgtgca tgtaggaaaa       900
     aaagtaggac tgaatatgtt gatatgtctt tagatgaatc taatgattgt gtcacaaata       960
     tggaatgtga tggaagctca ttaacaacgg atattgataa ctcagagatt tcttataatg      1020
     aagataacat tcgatcacct agagaaattg aactggaaga aatgcttgat ggtcttaaac      1080
     aaaaattttc caccttgaaa cacaatgatc ctttaagggt gcgaattctc actatagctc      1140
     cgtcgtcttg gagtgtgaga aaaatagtaa aagaatttgg tgcatcacga tatttagcaa      1200
     aaaaatctaa ggaattgaaa ttcaaccatg gcgtattagc tgatactact aaaagagttg      1260
     ggaaagtttt accgcaaact actgttgaaa aagtaattga gttttataat agtgatataa      1320
     acagcaggat aatgcctgga atgaagaatg ccatttcctt aataaataat aataaacgga      1380
     taatagtgca aaaacgtttt ttactattaa atttaaaaga actgcatgcc ttatttaaag      1440
     aatccaaccc aaaatatgat gttagcttta gtacatttgc taaacttaga cctagaaatt      1500
     gcatactccc tggggcttct ggaacacatt ccgtttgtgt ttgcacaatc catgaaaatg      1560
     tcaagttaat gattgatgca attgatgtac ggaaactaac agaaaatata gacaagccac      1620
     tttccaatta taaagattgt ttgaatgaaa ttatatgtaa ggaatcgaat cctgattgct      1680
     accttgataa atgtgatcaa tgcccaggta ctaccgagct ttctacaaag ctttctaaac      1740
     tattggacga ttcatgcatt tcccatgttc aatgttcttt atggaccgga actgatcgat      1800
     caactctatt aacgcaacag ttaaaagttg atgagttcgt aaacgagtta tgcaacaaat      1860
     tacaaattct gaaatctcat tcatttatcg ccaaacaaca aatgcttttc atttcagaaa      1920
     aaaaagagaa tctttgtgaa gatgaagtaa ttgtcatgtt tgatttttct gaaaactatt      1980
     catatgtttg tcaaaatgcc tcacaagcat ttcacttcaa caatgatcag tgtactgtgt      2040
     ttcctgttat ttactattat aaagaaaatt ctgaattgaa gcacaagagt aatgtatttt      2100
     tattagagag tttgaaacac gataccgctg ccgtttacac tgtacaaaca ttattaattc      2160
     cagagatttt aaaaaatgtc aaaaatctta aaagagtatt atacgtgacg gatggggcga      2220
     aacagcattt taaaaataaa tttcagattg ctaacttagt gcatcataaa catgatttca      2280
     atattcaagc agaatggcat tacagtgcga ctgctcacgg taaaagtgct tatgatggca      2340
     ttggtgctac tttcaaaaga gaggcatata aagcaagtct tgttgctaaa ccacaggatg      2400
     caatactaac atctcaagtt ctttttaatt gggctaaaaa acatttcaag aacataaaga      2460
     ttttttattn aaaaaaactg atcatgagaa ggtaaaaaaa aacttaagaa gagatttgaa      2520
     actgcaccgc ttgtaccgca aattcttaag aatcatgggt ttatagttgt ggacgagaat      2580
     aaagtgctaa tcaaaaggta ttccaatgat acaaatggaa cactatggca gttataagaa      2640
     acaaaagtaa gagatataga ataagaaaat atttcatgaa acatccatct atatacacac      2700
     acaggcacac gtacacacgt gagaggccag gggattcgcg taaatcaagc atttcaaacg      2760
     taagagtcaa agtgactaat atagatcaac taaggagcgt ggaggtgcat acatacatac      2820
     aggaatcaga cctcctcnac aaaaagtntg ctaacgaaat tgactataac aaagtatgtt      2880
     tcccgtttgc ggttttctac taactaatct gttgccaacg tttgcaattg cagaaaatgt      2940
     tacaagggat aatataagtt tcaaagtaat tttaagtaat ctt                        2983
//
ID   Sola2-2_AAe repbase;    DNA;    INV; 4680 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-2_AAe.
XX
NM   Sola2-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4680
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1300-1300 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. 4 bp TSDs. TIRs are ~780 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1411..2472,2429..3568)
FT                 /product="Sola2-2_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MDKVQYYEYNSLCCNPFGLDGHKSVRTNLRSISQGLI
FT                 SKLHSNGVRWITEKMKICVKCSITGDQKALVTDLPEAMAFEEQVSPLSSLA
FT                 SPKETPSSGESVGSINNVQKIQELAKFLEISFQVKSSRLDASSSNYRNASM
FT                 DEMFNQILSKIKTWFPPNIVDVTEDFNSVLLNLNSAVTKAEPDKQIELLKL
FT                 LPRNWSYAKVKAHFDVSQHVITESKKYNLGIQPLSKVGRPSHGSDVQDIVS
FT                 NFYLRDDISRPFPGLKDTISIKLPNGVRQNVQKRLLLDPLDXLYKQYLETC
FT                 KSEQESVSFTSFWKLKPKQCVYTKDSSAMNVCVCMIHENMKFMVDALKKTN
FT                 CFEVHNTEKKTKKLIALKFIIQKKKLNTFLTSQMICPDSTGDCYLRSCEDC
FT                 KLKKLDFVANRLDENNVEEVKYCFWIISPRCEIINKEENVNDFIENLKNLT
FT                 EKFLVHQFKVDKQNXFIRAKKESLVENKEIMCQMDFAENYSCVIQDSIQSH
FT                 YFVRPQVTIHPFVIYYKDKSSIKVLNFVVIADIKKHNTTSVYAFQTKLISR
FT                 LKNKFPELEKIIYLSDGCGEQYKNKSNFKNVCNHENDFKIRAEWHFFPTSH
FT                 GKGPCDGIGGNIKRMARDASIRKSAEINNAKQFFDWAVSQKVKDQFKKDWE
FT                 FIYATENDYSEAEKLLQERFSNLVPIPGTKKYHSFIPKDERSIFASEFSDA
FT                 HENQENTACFVLNTTKKRKSSGGSNQRQSSRLKK"
XX
SQ   Sequence 4680 BP; 1677 A; 739 C; 767 G; 1492 T; 5 other;
     ggggattttt ttttattacc gtacgggttt gggccgaagg gtctcagatt ttcatgaaac        60
     tttttccaca ggcagggctc atggatatat gaataaaaaa aaattgagaa aaattcaggg       120
     tcgcctattt ttccggaaaa ctcaggtgga aattttttgt tttcccttga cactacttac       180
     tttgaaaaat cataactcaa gaacgaagca tcgtagaaac aaagttttta tatgaaaatt       240
     taagcaaatt ttctcaaaaa tccaaaaaaa atatgaactg gaaaaagttt tccacaaaat       300
     tttccaccgt tgggaaaatt cgtaaagaaa agccggaaaa actatgcccg aactcgtgga       360
     aaattttcaa aaaaatattt tcgagaaggt aattttataa gctttaatca ctgaaatttt       420
     tggaatgcac tttttttcgt ttttgagtta tggccaattt tgtgaaaaat gtccagatgt       480
     gccatataag acttwtcttt gaaaaatcat aactcaagaa cgaaacattg tagaaacaaa       540
     gtttttatat gaaaatttaa gcaaattttc tcagaaatcc aaaaaaaata tgaactggaa       600
     aaagttttcc acaaaatttt ccaccgttgg ggaaattcat aaagaaaagc tggaaaatct       660
     atgcccgaac tcgcggaaat tttttaataa aatattttta agaaagaaac tttataaact       720
     tcaattctgg taacttttag gatgtacttt tcttaagttc ctgatctatg gtcaattttg       780
     taaaaaatgc aaagatttgc catacatgcc ttttcgttta aaaatcatga ctcaagactc       840
     atcatgactt gtcgaaccgg attcaaatta tttcaaaaat atgaaatttt tgaaatggaa       900
     tcagtttccc aggacatttt tcactgttta tgaaaacaaa taatgaaaac ccgattagct       960
     attccagctt tcaaacaaag tatatttgaa aagagcgatc aataagatcc aatcctacaa      1020
     tatttttcaa tacgctcatt tttcgttcct aaaacatgat caaatattgc taggatgagc      1080
     tgtttgaacc atatatttac aaatttataa gttcataaac aaaatttctt aagaacgaaa      1140
     ctacatagaa acaaagtttt cttcaatcag aatgtaggca attttttcct gttaggtaac      1200
     tacaaaattg acagttaaat aaatgggtag acaatatgac aaataggtat ttaccaattc      1260
     aagtttaaag cgttgaaatg gcttgagaat cataagttta ccaaaaacta acaaagagca      1320
     gtgagaaagt gcaagtgttg tctatcagct gtatattcct cgttattawt ttttgtggaa      1380
     agtgaaaaaa gttttcccga agctgttgaa atggacaaag ttcaatatta cgaatacaat      1440
     tctttatgct gtaacccctt cggactggac ggccacaaat cagtaaggac aaatctacga      1500
     tcgatcagcc aaggcctcat cagtaagctt cattcgaatg gagttcggtg gattacggaa      1560
     aagatgaaaa tttgcgtgaa gtgctccatt accggtgacc agaaggctct cgtaacggat      1620
     cttccagaag caatggcgtt tgaggaacaa gtttcaccac tatcttcgtt ggcgtcgcca      1680
     aaggaaactc cttcctcggg tgagtcagtt ggttctataa ataatgtaca aaaaatacaa      1740
     gagcttgcta aattcttgga aatttctttt caagtaaaat cttcacgttt ggatgcttct      1800
     agtagtaact atcgcaatgc ttctatggac gaaatgttca atcaaatttt gagtaaaata      1860
     aagacttggt ttccgcctaa tattgtcgat gttacagagg attttaattc cgttttatta      1920
     aatttgaact cagctgttac aaaagccgaa cctgacaagc aaattgaact tctaaaatta      1980
     cttcctagga attggtcata tgccaaagtt aaagctcatt ttgacgtgtc tcaacacgtt      2040
     ataactgaat caaaaaaata caatttaggg attcaaccac tttcaaaagt aggacgaccc      2100
     tcgcatggat cagatgtcca agacatagtt tcaaattttt acctaaggga tgatatcagt      2160
     cggccatttc ctggcttgaa agataccata tctattaagt tacccaatgg agtgcgccaa      2220
     aatgttcaaa aacgcctttt gcttgaccct ttggatastt tatataaaca atatttggaa      2280
     acctgtaaga gtgaacagga atctgtctca ttcacatcgt tctggaaact taaaccaaaa      2340
     caatgtgttt atacaaagga ttcatcggcc atgaatgttt gtgtttgcat gatacatgag      2400
     aatatgaaat tcatggttga tgcattgaaa aaaactaatt gctttgaagt tcataataca      2460
     gaaaaaaaaa cttaacacct ttttgactag tcaaatgata tgtccagata gtacaggtga      2520
     ttgttacttg aggtcctgtg aggattgtaa attaaagaaa ttagattttg ttgccaatcg      2580
     cttagatgaa aacaacgttg aagaagttaa gtattgtttt tggattattt ctcctcgttg      2640
     tgaaattatc aacaaagagg aaaatgtaaa tgattttata gaaaacttga aaaatctcac      2700
     agagaagttt cttgtgcatc aattcaaagt agataaacaa aataawttta taagagctaa      2760
     aaaggaatca ctagttgaaa acaaagaaat aatgtgccag atggatttcg cggaaaatta      2820
     ttcgtgcgtg atacaagatt ccattcaaag ccattacttt gtacgacctc aagtaacaat      2880
     acatccattt gtaatttatt acaaagacaa atcttcgatc aaagtcttaa attttgttgt      2940
     aattgctgac ataaaaaagc ataacacgac atcagtttat gcttttcaaa caaaactaat      3000
     ttcaagattg aaaaataaat ttcctgagct tgaaaaaatc atttatcttt ctgatggttg      3060
     cggagagcag tacaaaaata aatcaaattt caaaaatgta tgcaaccatg aaaatgattt      3120
     taaaattaga gcagaatggc actttttccc aacctcacat ggaaaaggtc catgtgatgg      3180
     tatcggtggc aatattaagc gaatggctag agatgctagt attagaaagt cagcggaaat      3240
     taataacgcc aaacaatttt ttgactgggc tgtgtcgcaa aaggtgaaag accaatttaa      3300
     aaaagattgg gaattcatct atgcaactga aaatgactat tcagaggctg aaaaattact      3360
     tcaggagaga ttttctaacc ttgttccaat tcctggaaca aaaaaatatc attcatttat      3420
     tccaaaagac gaacgaagca tttttgcgag tgaattctca gatgcacatg aaaaccaaga      3480
     aaatacagca tgctttgttc ttaatactac aaagaaacga aaatcttctg gtggtagcaa      3540
     ccaaaggcaa tcttcccggt tgaaaaaata gatagtttta agataaaatg twagttatgt      3600
     actgaataat tgaataaata aaattaaaga aatatataaa aagaatctta tttgttccat      3660
     agaaaagaaa gaatcccttg gaatggaaaa gaaacagttt tttcagcttt gcttaacggt      3720
     gtaatgtttc atgaaaaata taatccaatc cgacttatac ttcattaaaa ccaatcccat      3780
     atcgtttctt tcagatcttt tagaaaattt gcaattgctt tgataaaaaa aaccttgttt      3840
     ttctgatgct tcgattgaaa tatgggtttt caaagaaaag gctaatatgg tcatttttca      3900
     caaaattgac cataactcag gaacaaaaaa aaagtacatc ctaaaagtta ctagaattga      3960
     agtttataaa gtttccttct caaaaatatt ttaataaaaa ttttccgcga gttcgggcat      4020
     agattttcca gcttttcttt atgaatttcc ctaacggtgg aaaattttgt ggaaaacttt      4080
     ttccagttca tttttttttt tggatttctg agaaaatttg cttaaatttt catataaaaa      4140
     ctttgtttct acaatgtttc gttcttgagt tatgattttt caaagaaaag tcttatatgg      4200
     cacatctgga catttttcac aaaattggcc ataactcaaa aacgaaaaaa aagtgcattc      4260
     caaaaatttc agtgattaaa gcttataaaa ctaccttctc gaaaatattt ttttgaaaat      4320
     tttccacgag ttcgggcata gtttttccgg cttttcttta cgagttttcc caacggtgga      4380
     aaattttgtg gaaaactttt tccagttcat attttttttg gatttttgag aaaatttgct      4440
     taaattttca tataaaaact ttgtttctac gatgcttcgt tcttgagtta tgatttttca      4500
     aagtaagtag tgtcaaggga aaacaaaaaa tttccacctg agttttccgg aaaaataggc      4560
     gaccctgaat ttttctcaat ttttttttat tcatatatcc atgagccctg cctgtggaaa      4620
     aagtttcatg aaaatctgag acccttcggc ccaatttgta cgataataaa aaaaatcccc      4680
//
ID   Sola2-2_LHu repbase;    DNA;    INV; 3608 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola2-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-2_LHu.
XX
NM   Sola2-2_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-3608
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 380-380 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~750 bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1407..2207,2211..2471)
FT                 /product="Sola2-2_LHu_1p"
FT                 /translation="MKDFVSVKKEDGSRERIQKRLVLCNISELYAKFKMQY
FT                 SDIKIGFSKFAELRPRQCVLAGSSGTHTVCVCVHHENVNLMLDAIKLEKII
FT                 ENTKLPLKTYYDCLKCIMCNVPSSSCHLGECELCPNKENIKNHLKIVLEDH
FT                 FIEKVEFQVWQQTDRSTLKIKVADIEDFLEQFCNLLIKLKPHDFVAKAQSS
FT                 FLIELKKNLIENQIIMQFDFAENYAFIVQNTAQSFHWNNNQCSIFTVVLYY
FT                 KEQKELKHRNIVILSDSLKARHDRCLVSKNNYYLLKENFTPTKIFYFTDGA
FT                 AQHFKNKYNFINLLSHKNDFDIAAEWHFHATAHGKGPCDGIGGNLKRLAAR
FT                 ASLQVSAKILF"
XX
SQ   Sequence 3608 BP; 1333 A; 554 C; 547 G; 1174 T; 0 other;
     gcattctgta tgaagtgatc caactaaatt ttcaaagttt tatcatttgg ttcgtcacgt        60
     ccaactttaa acatcgataa attttagtaa attgctccga ttttaagaag taaatagtgg       120
     ttttaaaaga tctttttacg tcctttaagt ttataaaaaa aaagtcagct ttttaaaaaa       180
     ttaaaattta tttaaaattt ttgaagaaca aaataaaaat cgttttttct caaatttcga       240
     catcttcgat ttttttcaaa atatctttta aaaaaagtag aaatctttcc ctttaaaacg       300
     agaccaagtt caaaatgggc agattttttg ttcttaagat ataatccgtt ttagaaccaa       360
     gcgcgtcatc catggtgcag ctcacgcgct gttgcaactt tcgtaactaa ggagcgcaat       420
     attatttatt ttttctattt catttgttta taataaaata tcgtgctcct tagtttttac       480
     aaaagttgaa actaaatgat agcactgcta taaaaatgaa tactgcatta aattagtgga       540
     atatcatatt ataattatta gtgactgatt ttctgatatg atttatgtga tctctttcag       600
     tattatatta ggagtttttt tattacattg taagtttagc atttactttc ggttccactc       660
     cactttgaat ttcgacttga attaatttga tttttatttt agcacgtcct tggattctga       720
     gttttataca tttttgttaa ataagtcata gtgcaattat ggcaacacag ataaaagcct       780
     gggctgatcg atgctttaat cctttaaaaa aaaaggtcat ggaaaaggat ctgatttaag       840
     aaacatttct aaagcttctt tcttaaagct tctaggcaat gttccagtga atgcaaaatt       900
     gtgcatatct tgtagaaaag aattacagac gtttcaaaaa ctccctgtct tacaatcagt       960
     gaatcataca caagctgtga acattgatat tgacaaccac gatattttgc ataaagattt      1020
     cgatttcatt gataatacag aagatgtaaa agatttagat ttttcgttac ctccagcatt      1080
     aaaaaaacca aatttgcaat gtgacaacga gtataacagc tgttcaaatc ctggagcaac      1140
     ttaagaataa gtttcggaaa tccgcaagta gttcggagaa actgttactt ctcactctcg      1200
     cacccacatc atgaagccaa aagaaattag caatcgaatt tggcacttct gaacgtcagg      1260
     ctcgaaaagc gaaagaatta gtatctaaac atggaatttt aactttacca aatccaaaaa      1320
     taggaggaag aaaactatct gttgaaacag aatctattgt taaagcattt tatgaagacg      1380
     atgaaaacag taggctactg cctagaatga aagatttcgt ttcagtgaag aaagaagacg      1440
     gatcccgtga acgcattcaa aagagactag tgctatgcaa tatttctgaa ttatatgcaa      1500
     aatttaagat gcaatattct gatataaaaa ttggcttctc aaaatttgct gaacttaggc      1560
     cacgtcagtg tgtacttgct ggaagcagcg gaacacatac tgtttgtgtg tgtgtgcacc      1620
     atgagaacgt taatctcatg ttggatgcga tcaaactaga gaaaataatt gagaatacca      1680
     aactaccttt aaaaacttat tacgactgtc taaaatgtat tatgtgcaat gtcccttctt      1740
     cttcatgcca ccttggagaa tgtgaattat gtcctaataa agaaaatatt aaaaatcatt      1800
     tgaaaatagt gttagaagac catttcattg aaaaagtgga gtttcaagtt tggcagcaaa      1860
     cggacagaag tactttgaaa attaaagtag ctgacattga agattttctt gaacaattct      1920
     gtaatctttt gataaaactt aaaccgcatg attttgtggc aaaagcacag tcatcatttc      1980
     taattgaatt aaaaaaaaat ttaatagaaa atcagattat aatgcagttt gactttgcgg      2040
     aaaattatgc atttatcgtt cagaatacag cgcaatcatt tcactggaac aacaatcagt      2100
     gctcaatttt caccgtagtc ttgtattata aagaacagaa agagctaaaa caccgcaata      2160
     ttgtcatttt gtccgacagt ttaaaagcac gacacgaccg ctgtctatga gtttcaaaaa      2220
     ataattatta cttattaaag gaaaacttta ctccaacaaa aatattttac tttacagacg      2280
     gtgctgctca acattttaaa aacaagtaca atttcattaa tctactttca cacaaaaacg      2340
     attttgatat tgctgcagaa tggcactttc atgccacagc tcacggcaaa ggtccatgtg      2400
     atggaatagg tggaaactta aaaagacttg ctgcacgagc tagtctacaa gtatcagcaa      2460
     aaatcctatt ttaactcctg aagctttata tcaatgggca aaaaaaaatt tggatagaac      2520
     tatcattttt tttagttcta aagcagatca attggtgaca gctgaagtgc tgaaaaatag      2580
     atttacgaaa gcaatgacag tgccacagac acaaaaatat cagtgttatt cctgctgatg      2640
     acaaaacgct caaatttaaa agatattcct cagcaacaga gaatgatgtt tttcctaaaa      2700
     taaaggcaaa aaaatataaa aattaaaagc aaatataagt taattaatat aattcttgtt      2760
     ttttaaattc caccttgttt ttattaacga tttattttga cttttttttt tggttagtaa      2820
     atgacttata ctatgactat gactatgact atgactgtaa cttatttaac aaaaatgtat      2880
     aaaactcaga atccaaggac gtgctaaaat aaaaatcaaa ttaattcaag tcgaaattca      2940
     aagtggagtg gaaccgaaag taaatgctaa acttacaatg taatcaaaaa actcctaata      3000
     taatactcaa agagatcaca taaatcaaat cagaaaatca gtcactaata attataatat      3060
     gatattccac taatttaatg cagtattcat ttttatagca gtgctatcat ttaattgcaa      3120
     cttttgtaaa aactaaagag cacgacattt tattataaac aaataaaata gaaaaaataa      3180
     ataatattgc gctccttagt tacgaaagtt gcaacagcgc gtgagctgca ccatggatga      3240
     cgcgcttagt cttaaaacgg attatatctt aagaacaaaa aatctgccca ttttgaactt      3300
     ggtctcgttt taaagatttc tacttttttt aaaaaatatt ttgaaaaaaa tcgaagatgt      3360
     cgaaatttga gaagaaacga tttttattct tcaaaaaaca atttttgctt caaaaatttt      3420
     aaataaattt taactttttt aaaaagctga ctttataaat ttaaagggcg taaaaagatc      3480
     ttttaaaacc actatttact tcttaaaatc ggagcaattt actaaaattt atcgatgttt      3540
     aaagttggac gtgacgaacc aaatgataaa actttgaaag tttagttgga tcacttcata      3600
     cagaatgc                                                               3608
//
ID   Sola2-2_LMi repbase;    DNA;    INV; 4270 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4270
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3301-3301 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1044..1148,1130..1300,1304..1444,1408..1623,
FT                 1619..1849,1875..1988,1992..2714,2705..2860,
FT                 2909..3061,3037..3423)
FT                 /product="Sola2-2_LMi_1p"
FT                 /translation="MEKCSVGQVTNSDCHLLHYVKQKAVQSVENCLKLIKL
FT                 SETNLTLLKLRTESDDKLKTICHHHQCVFLKKYEFLQKVCCDPFKKHKSPI
FT                 KKTLIGTVEQSRKCVSKGYKVKPGQKLCTSCRKQLLEIEKKKQMNAMLKMR
FT                 KKKTDECNVEDEVADDVGLEPDEVVLLQKSIVTDKLNSSFSETGSSPMKLH
FT                 ALGEHSRSSYGKEKLKEYMKIKFKTQIQTVLSVDLTEEKNDLEISMKKKSE
FT                 DMDKLVGLINNELPTSSRNKQIQMLTIPAALNWSRRKIREHFFFSRTVLKH
FT                 ELVKMFYQNDDQSRILPGMKDVVSTGKKVYGESNSYVICELYSVFKLEYPD
FT                 LKIGFSKFCSLRPKWCVLAGASGTHLVCICTIHQNVILLIHGTGIGENYKE
FT                 LMKYLLCEDASRECMLRHCDKCPSKDNLISFLQSKFQDNDEEDTIEYSQWV
FT                 STDQTEMVRCSSSVGEFIEKLVGQLNKLIPHSYIAKSQSLFLRNLKETASS
FT                 NLAIVTMDFSENYAFVIQDEVQGYHWTSLSCTIHPVMIHCRGASNEKLILP
FT                 FCIISDDLQHDVFMVYEIKKDQKIITTFLKDSYPHIRNIHYFSDGCAGQYK
FT                 NKYNLMNLCMHQKDFQPNGHFKFIGRKVYSALEKQITTTNELFEFCKANIK
FT                 NINFKLICKGSVELDRLCRIATRQTLQNRMKMFKHFQELELSTTSNQCMIR
FT                 RIEARRISSDSKPALTFNLCDKMQNIFVKLEDLSSGCFIACVYKLWYFGMV
FT                 SEVNIEEKDVLDFYILMDHQNHFSGPREKILVLFPSFTLSPLWTLQRQ"
XX
SQ   Sequence 4270 BP; 1506 A; 652 C; 764 G; 1348 T; 0 other;
     gggtcattcc atgtcaaatc aaccaaaaaa agtaagattt gacacccatg gtcttagatt        60
     ttgatataaa ttggcatatt tattcctttt atgattgtaa gtagggaacc aaaatatttc       120
     tgctgtgtct caaaccattt agattttgac agcctgtgaa agttttttaa atttaataac       180
     ttttggttgt cgggcagagg aaatacagtg tgttcaaaaa tagaaaataa tttatatctc       240
     ccacatttac caacaaatat tgataaaact aatgtgtgtg ttcatcaatg tataaagagt       300
     tcagagcaat gtaaattaaa acatactgac acaacatgtg gccagcaaaa attaataaat       360
     tgaagttttc aaatttttta aaaccaatta cggagatcca cactaagtgg aatatcatcg       420
     aaagggaaaa ggatattcag ttaaaacttt tttaaatctt gttctaaagg atgtactcca       480
     cataatggca aaataaaatt aatgggtttt ccactcctac aagaattatt atttaataga       540
     aaacagtaaa tgtaaaattt cacgcgccta atacagtgtg ttgaacttac attttatttt       600
     ttttaattac atccattttg cttggaaagt aaaagtaatg tgtattaaaa acaagattaa       660
     ataatttgct taacatgtag gagtatctat ttgtgtgtag ctttgaactg ttggtgtact       720
     gtttctttct gcaagagttc tgaaaccaac aatgtagctt tgtagaaata cacagcatta       780
     tacatcgttg tcttattctt gcactctgct gtttactgaa aacttccctc atactctaca       840
     aaggtattta taaaacaact atttaagtga gtaatcttca atttcagata atttgaaaaa       900
     gataccacat gcaaaatttt cttttctaga tgctaaaagt gtggaagtag gtctgacaat       960
     tgagctggac tccagtatct gctgtgataa ttctgagtca tggagagcta ttttttaaat      1020
     gttttattct gctgtatagt ataatggaaa aatgcagtgt tggtcaagtt actaacagtg      1080
     attgtcattt attgcattat gtcaaacaga aagctgtgca atctgttgaa aactgtctga      1140
     aactaattta actctcttaa aattgagaac agagtcagat gacaaattaa aaactatttg      1200
     ccaccaccat caatgtgtct ttctgaaaaa gtatgagttt ttacaaaagg tttgttgtga      1260
     ccctttcaag aaacacaaat caccaattaa gaaaacactt tgaattggaa ctgtagaaca      1320
     aagtagaaaa tgtgtatcaa agggctacaa agtgaaacca ggacaaaaac tgtgtacatc      1380
     ctgcaggaaa caactacttg aaattgaaaa aaaaaaacag atgaatgcaa tgttgaagat      1440
     gaggtagcgg atgatgttgg attagagcct gatgaagtag tcctattaca gaaaagtatt      1500
     gtcactgata aactcaattc ttcattcagt gaaactggaa gttccccaat gaaactgcat      1560
     gcccttggcg aacacagcag atcctcctat ggcaaagaaa aattaaaaga gtacatgaaa      1620
     atttaaaaca caaattcaaa ctgttctctc agttgacttg acagaagaaa agaatgactt      1680
     ggaaataagt atgaagaaaa aatctgaaga tatggacaag cttgttggtt taattaacaa      1740
     tgaactaccc acttcatcac gaaacaaaca gattcagatg ttgacaatcc cagctgcact      1800
     gaattggtct aggagaaaaa taagagaaca tttttttttt agcagaacct gatcaaaaat      1860
     gtggaaaatt ttgagtcctg aaacacgagt tagtgaaaat gttttatcag aatgatgacc      1920
     agtccagaat tttgcctgga atgaaggatg tagtgagcac aggaaaaaaa gtatacggag      1980
     aaagcaattg atcttatgta atctgtgagc tctactcagt ttttaagttg gaatatcctg      2040
     acttaaaaat tggtttttca aaattttgtt ctttgaggcc taagtggtgt gttttggctg      2100
     gtgcaagtgg tacacactta gtctgcatat gcaccataca tcaaaatgtc attttgttga      2160
     tacatggaac tggtattgga gagaattaca aagaacttat gaaatatctt ctttgtgaag      2220
     atgcaagcag ggaatgtatg ctgaggcatt gtgacaagtg tccatcaaaa gataatttga      2280
     tcagtttttt acaatcaaaa tttcaagaca atgatgaaga agatactatt gagtacagtc      2340
     agtgggtttc aaccgatcaa actgaaatgg tacggtgttc gagctcagtt ggggagttca      2400
     ttgaaaagtt agtggggcag ctgaacaagt taataccaca ttcatacata gccaagtcac      2460
     aatcgttgtt tcttagaaat ttaaaggaaa cagcttcctc aaacctggca atcgttacta      2520
     tggatttcag tgaaaactat gcttttgtaa tacaagatga agtacaaggt taccactgga      2580
     cctcactttc atgcactatt catccagtca tgattcactg cagaggtgca agtaatgaaa      2640
     aactgatttt acctttttgt atcatttctg atgaccttca acatgatgtg tttatggtat      2700
     atgagatcaa aaaataataa ccacattttt gaaagacagt tacccacaca taagaaacat      2760
     tcactacttc agtgatggct gtgctggcca gtataaaaat aaatataatt taatgaatct      2820
     gtgtatgcac cagaaagatt ttcagcccaa tggtcatttt tgaacgagtc atggtaaaac      2880
     agatgtgatg gtataggggg tactgtaaaa gtttatagga aggaaagtct acagcgcact      2940
     ggagaagcaa ataacaacaa caaatgagct atttgagttt tgcaaagcca atattaaaaa      3000
     tattaatttc aaacttatct gtaaaggctc ggttgaactc gacagacttt gcagaatcgc      3060
     atgaaaatgt tcaaacactt ccaggaacta gaactttcca caacttccaa ccagtgtatg      3120
     attcggagaa tagaagctag aagaatcagc agtgattcaa aaccagctct cacattcaat      3180
     ttgtgtgaca aaatgcaaaa tatatttgtc aaactagagg atttatcttc tgggtgtttt      3240
     attgcttgtg tttataaact atggtatttt ggcatggtta gtgaggtaaa tattgaagaa      3300
     aaagatgtgc ttgattttta catcctcatg gaccatcaga atcatttttc tggcccgaga      3360
     gagaagattc ttgttttatt cccatccttc acattatcgc cattgtggac cctccaaaga      3420
     caatgactgg gagagcttac aattttactc aagaatgcat ggcctatgtg aacaataaag      3480
     ttttgaaaat ctagaggaac tcaaaaacat gacatagaat ttagagtcat tatacgactg      3540
     ttgtaatgaa atttaaaact tgtatttatc tacttgttta ccaagttatt atttgtgttt      3600
     aaaaccaaga aacattaatc ttgtttctat ttctcaatac tgtccacttt tcaagctata      3660
     attaaaattg atttaattaa atatgaggaa ttgtacattt agcaaaatct aaggagcaag      3720
     agatgtttgc taattaattt tgtttgtgga ctaataaacc atgaaggagt ggaaaaccca      3780
     caaattttat tttattgttt ggtagagtat gtcttttaga acaagaataa aaaaagtgtt      3840
     attcaaatat tattttccct tttgacgata ttgctcttaa tgcggttttc cgtatttggt      3900
     tcgaaaaata ttgaaaactg caattaagga ttttcctgca catgcgcagt cttataaggt      3960
     tttcattaac attatttttt aaatctttac acattcatgc acacatacac aaaaaattat      4020
     cactattagt tggtaaatga ggaagatata aattattttc tatatctcag tacatgtata      4080
     tccttgctcg acaaccaaaa tctactaaat tccataaact tcaacaggct gtaaaatcta      4140
     aatggtttga gacagagcag aaatattttg gatttttagt taagtccata aatggaacaa      4200
     atgtgccaag ttataacaaa atctgagacc atgggtgtca tggggtggtt gaactgacgt      4260
     ggaatgaccc                                                             4270
//
ID   Sola2-2_NVi repbase;    DNA;    INV; 4375 BP.
XX
AC   .
XX
DT   16-FEB-2009 (Rel. 14.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   Sola2 DNA transposons from Nasonia vitripennis.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-2_NVi.
XX
NM   Sola2-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4375
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Mol Biol Evol 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           1488..3497
FT                 /product="Sola2-2_NVi_1p"
FT                 /translation="MCRRYIIFFFTNHKICIFVMSSKKSQHTDRCCNPYAN
FT                 LGNPHHKGKDLRMVSEYLRSKFPYLSDSDRICWNCRHEKYSCSNNSIEISL
FT                 SNACDTDSVHCDSFDQRNVSLSAADEQNLSSQSNTSVVEVTDNDVRSEREM
FT                 QLEDMLTKLKEKFSSLQITDPLRKRILTIAPEVWSVNKIAKEFNCSRRLAK
FT                 QSKELRASGGILANTTAKAGKPLPDETVRKVKDFYMNDINSRVMSGKKDVV
FT                 SVKSGEDRCLEQKRLLLLDLRELHKLYKESEPKFLVSFSKFAQLRPKQCVL
FT                 AGSSGTHSVCVCTIHQNVKLMLDAINIKKLTEHSAKLLKDYKDCLKQITCE
FT                 NSKTNCLLGECNLCSNTVDLSRFLHQLLDSKGIDKVQYSTWVTTDRSTLQT
FT                 QLFSSHNFVEELCDRLTTLKPHSFISKQQSQFFEEKKNNLCIGEILAVFDF
FT                 SENYKFIVQDASQAFHFNNKQCTLFPVVCYYKENQELKHKSIIFLSDSLQH
FT                 DTAAVYTVQMKLIPHLKKELSAKKIIYFSDGAKQHFKNKFQMINLIHHERD
FT                 FRIKAEWHMHATAHGKGASDGIGATFKREASRQSLLRKSTEPILSPLQLFQ
FT                 WGNQSMKNMILFFYSKQEHTKSQRFLNARFKKAPAVPQISKHHCFIVEKGK
FT                 ILLSKRYSNASDGLNLIYKT*"
XX
SQ   Sequence 4375 BP; 1405 A; 770 C; 805 G; 1395 T; 0 other;
     gaggcattat ttgtcaaccg gacaccccct gctctccaga gttgtttaaa cttttaagag        60
     tcaatcgagg tttcaaaatt tgtgtttttt cgtctagttt ttggagcaga gtggcgtttt       120
     tcgattatca aaatggctga gacaatatgg cggcttaata caatggctta atgtaggact       180
     ttagtttcat tacagaaatt attcaaaatg aatgagcgca tcaggctaaa aatgtttatg       240
     caaaagtaat taatgtcata aaatatggat caaatctaaa aatggtgaaa ttcaagatgg       300
     cggatccaat atgatagccg tataggctct tgcaattgaa aattgaaaat aaccgtttga       360
     ctgtctccaa atttgatact caggggtttt tgggttcgat aattacaatt ctgatatcca       420
     aattgctaaa ttcaagatgg cgggtccaat atggcatcct tatagtccct tgatattcaa       480
     aatggagaat aagcgttcga ttggctcaaa atttgataca caggggtttt tagagttcat       540
     aattacaatt ctgatgtcaa aatgtaaaat ttaaaatggc ggacggatat ggtggatcca       600
     acatgatggc gtacaggtcg ttgccatact aaatgagcat attgcatagt cgcatataca       660
     ataattgata ataatagtat aaatttttct taattcttga ataagtttat atctatcaga       720
     actattagga tactactttt ccattaacgt tttcctccct tttcaaatga aaattgtttt       780
     tctgacttga gttgcataat tggatctttt tttgaatctt ccattgaaac atctctacaa       840
     cagtattgtt ttattggaat cgcggctacg gaaaaattgg tgctcgtgag gtttacaaat       900
     tgccgaaatt ttgtcagtca tatccttcta ttgtttgcat tattcgtttt cagaataact       960
     gagacaattt tccattcgtc gatgtcaact gtgagtgatc acctgccgac aattcttttc      1020
     aggatagttg gtgagttctt tcattcgagg ccgtcaattg tgagtgaaca tctgccgaca      1080
     gtccttttca ggatagttgg tgagttcttt cattcgaggc cgtcaatagt gagtgaacat      1140
     ctgccgacag tccttttcag gatagttggt gagttctttc attcgaggcc gtcaatagtg      1200
     agtgaacatc tgccgacagt ccttttcagg atagttggtg agttctttca ttcgaggccg      1260
     tcaatagtga gtgaacatct gccgacagtc cttttcagga tagttgatga gttctttcat      1320
     tcgaggtcgt caattgtgag tgaacatctg ccgagagtcc ttttcaggat agttggtgag      1380
     ttctttcatt cgaggccgtc aatagtgagt gaacatctgc cgacagtcct tttcaggata      1440
     gttgatgagt tctttcattc gaggtctcat ttcatttgtg attgtcaatg tgcaggcggt      1500
     atattatttt ctttttcaca aatcataaga tttgcatctt cgtcatgtct tctaaaaaat      1560
     ctcaacatac tgataggtgc tgtaatcctt atgcgaattt gggtaatcca catcacaagg      1620
     ggaaagatct gagaatggtt tctgagtatc tgagaagcaa gtttccttat ttgtctgata      1680
     gtgatcgaat atgttggaac tgcaggcacg aaaaatacag ctgttcaaac aatagtattg      1740
     agatatctct cagtaatgcg tgtgatacag attctgttca ttgtgattca ttcgaccaaa      1800
     ggaacgtttc attatctgca gctgatgaac agaatttatc atcgcaaagt aatacatcag      1860
     tagtagaagt tactgataac gatgttcgat ccgaaagaga aatgcaattg gaagatatgt      1920
     tgactaaatt gaaggaaaaa ttttcttcat tacaaataac ggacccttta aggaaacgta      1980
     ttctcactat tgcaccagaa gtatggagtg tcaataaaat tgcaaaagaa ttcaattgta      2040
     gtaggcgact agctaaacaa tcaaaggaac ttagagcttc aggaggtata ttggcaaata      2100
     ctacagcaaa agctggaaag ccattgcctg atgagactgt acgaaaagtc aaagattttt      2160
     atatgaatga tatcaatagt agagttatgt ctggcaaaaa agatgttgtt tctgttaaat      2220
     caggagaaga tcgttgttta gaacaaaaac gtcttcttct tttagattta agagaacttc      2280
     ataaattgta caaagaaagc gaacctaaat ttcttgttag tttcagtaaa tttgcacaat      2340
     tgcgtccgaa acaatgcgtt cttgcaggtt cttctggcac tcattctgtc tgtgtgtgta      2400
     caattcatca gaatgtaaag ttgatgctcg atgctataaa tatcaagaag cttacggaac      2460
     attctgcgaa attactaaaa gattataaag actgcttgaa gcaaataacg tgtgaaaatt      2520
     ctaaaacgaa ttgtttacta ggtgaatgta atctatgttc gaacacagta gacttgtctc      2580
     gattcttaca tcaattatta gatagtaaag gcatcgataa agtccaatac agtacctggg      2640
     ttacaactga caggtcaact ctacaaactc aactcttttc atcgcacaat ttcgttgaag      2700
     agttatgcga tagattaaca actctaaagc ctcattcttt tatttctaag caacaatcac      2760
     agtttttcga agaaaagaaa aataatttat gcatcggtga gatactagct gtcttcgact      2820
     tttctgaaaa ctataaattt attgttcaag atgcatctca ggcatttcat tttaataata      2880
     aacaatgcac cctttttcct gtagtatgct actataaaga aaaccaagaa ttgaagcata      2940
     agagtatcat atttttatca gatagtttac agcatgatac agcagctgta tatactgtgc      3000
     agatgaagtt aattccccat ttaaaaaaag aactcagtgc aaagaaaatc atttacttta      3060
     gcgatggtgc aaaacagcac tttaagaaca aatttcaaat gattaatttg atacatcacg      3120
     agagagactt tagaattaag gctgagtggc atatgcatgc aactgcgcac ggtaaaggcg      3180
     cttcagacgg tattggagca acattcaaaa gagaagcttc gagacagagt cttttgcgta      3240
     aatcaactga gcctatttta tcaccgcttc agctctttca atggggtaat caatccatga      3300
     aaaatatgat attattcttt tatagtaaac aagagcatac aaaatctcag agatttttaa      3360
     acgcaaggtt caaaaaagct cctgcagtac ctcaaatatc aaaacatcat tgttttatcg      3420
     tggaaaaagg aaagattctg ttatcaaaga gatactctaa tgcttcagat ggattaaatc      3480
     ttatttataa aacatgaaac tttacgaatg agggatgaac gcatcagctc ataatatttc      3540
     tccaatataa aaatccgcga tgttccaatt ttcacactgc ttcacggact ttaagcgaac      3600
     tcgcatcagt aagacccata taacctcgat attgctatct cgaatgaaat aactctaaca      3660
     ccgaatttat gacttaaaaa aaacgtccct gataagtgat ttcaagacgt tttcagaatc      3720
     gttatggaaa ttacattact attactgacc atgagtgcat acaccatgcc ccttttaatt      3780
     tgcaagggcc taattttgta atattgacat taaaatagaa attgccgaac tcacaaaccc      3840
     ctcagcatca atttttgagc cagtcaaacg attgttcacc attttgtatt gcaagggcct      3900
     atgcggccgc catattggat ccaccatatc cgtccgccat tttaaatttt acattttgac      3960
     atcagaattg taattatgaa ctccaaaaac ccctgagtat caaatttaga gccagtcaaa      4020
     aggttatctt ctattttcaa ttgcaagagc ctatacggct gacatattgg atccgccatc      4080
     ttgaatttca tcatttttag acttgatcca tattttatgt cattaattac ttttgcataa      4140
     acatttttag cctgatgcgc tcattcattt tgaataattt ctgtaatgaa gctaaagtcc      4200
     tacatcaagc cgttgaatta agccgccata tcgtgtcagc cattttgaaa atcgaaaaac      4260
     gccactcggc tccaaaaact agacgaaaaa acacaaattt tgaatcctcg attgactctt      4320
     aaaagtttaa acaattctgg agagcagggg gtgtccggtt gacaaataat gcctc           4375
//
ID   Sola2-2_SIn repbase;    DNA;    INV; 2877 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 19.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola2-type retrotransposon sequence - a consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-2_SIn.
XX
NM   Sola2-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-2877
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 349-349 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. ~370bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           707..2752
FT                 /product="Sola2-2_SIn_1p"
FT                 /translation="MSRIKKALIFQESGVRSDRCINPFKGNGHVGKNLRTI
FT                 SKNMVQKFPDLREGAKICAKCRIMLDKDVDVSPSKKKCLSREDELEDVSPS
FT                 KNKCSSIEDELEDVSPSKXKCSSREDELEDVSRSKKKCSSREENWKSELED
FT                 VSRNKKKCSSREEELEEMLNGLKEKFSNLDKNDPCRVAILTIAPECWSIRK
FT                 IAEEFGTSRRMAKNAKELRASEGVLAMPALRQRKCLPENTVKKVTDFYEND
FT                 INSRIMPHKKETVTIKIDDHKKKIQKRLLLSDVKSLHIEFKKLNPEHPIGL
FT                 TRFSELRPKYCVLAGARGTHSVCVCTDHQNFKAMLDAIDIKRLTNNLKNPV
FT                 NNFKDCFPFVVCKTPTPACYLRDCESCPDIGRFSDYITKLLQQRGVSEIIF
FT                 STWQSTDRCTLIKECLSTDDFVSQLCTRLEKLVPHHFISKNQSKYVSERKN
FT                 SLRPEEVLVQCDFSENYAYVAQDAAQAFHYNNDQCTVHPVLFYYTNEKEVS
FT                 HKSIVLLSNCTTHDTAAVYVMQEILIPEIRKVCPNVKKIIYVTDGAKQHYK
FT                 NKYQMSNLIHHKEDFGIEAEWHCYATAHGKGACDGVGAIFKREATRASLQA
FT                 KSTEAILNSADLFEWAKKKFINIKFFYYSKEKHIKIQKFLAKRFSEAPRVM
FT                 KIQSGHAFLVIKGKKLQVMRYSGAIEPMVIVEY"
XX
SQ   Sequence 2877 BP; 992 A; 475 C; 538 G; 871 T; 1 other;
     cgaggtcgtt gattacgaat ctggagaccg aattacaaaa ttcaaaatgg cggattcaaa        60
     atggccggat ttggaatcag tacataaaac gcgagtatta taattattgt tgtgtattat       120
     cgagtcaaaa acggcaccag agtatcgcat tacttgcaat tttgttcctt taatgacaag       180
     gaaagcatgc ccactttgga ttttcattac tcgcggagct tcagaaaatc gttttgcaag       240
     aaatttctga atttttatat gtttctcttt gctgtaatag aaaaatttga tattgataaa       300
     tttctttttt acccattcaa aaagatctgc tgagttcaag atggcttctg ttgattcata       360
     actacctata gtaaatagct atagttacgc tcaagtccgc taggaggcga gctttctcgt       420
     aagaaaagtt acaacattgc agccttaaat ataagtaact gtgtaactta aaattacgga       480
     tatgtttatt ctattttcgc atcggtgctt ttttcttacc ttatcaatca gtccttttca       540
     ggattacatt tcaaccagtt ctttttagag ctatttgtat taaatgtatt aaaatctttt       600
     gtttttgtgg tcctatgtta tttttagtta tttgattaat tgacagtgtt tgatttatat       660
     cactttcaaa tattcctttt tttaccatct gtcttattaa aataacatgt ccagaattaa       720
     aaaggccttg atttttcaag aaagcggggt gcgatcggat agatgcataa atcctttcaa       780
     aggtaatggg catgttggta aaaatttgcg gacaatttca aaaaatatgg tacaaaaatt       840
     tccagattta cgggagggtg caaaaatttg tgcaaagtgt agaataatgc ttgataaaga       900
     tgttgatgta tctccaagca aaaaaaaatg tttgtctaga gaagatgaac tggaagatgt       960
     atctccaagc aaaaataaat gttcgtctat agaagatgaa ctggaagatg tatctccaag      1020
     caaaaanaaa tgttcgtcta gagaagatga actggaagat gtatctcgaa gcaagaaaaa      1080
     atgttcgtct agagaagaga actggaagag tgaactggaa gatgtatctc gaaacaagaa      1140
     aaaatgttcg tctagagaag aagaactgga agagatgctg aatggactta aagaaaagtt      1200
     ttctaactta gataaaaatg atccatgtcg tgtcgcaata cttacgattg ctcctgaatg      1260
     ttggagtatc cgtaaaatag ctgaggaatt tggaacatct cggagaatgg caaaaaacgc      1320
     taaggaattg agggcatcgg aaggtgtttt agcgatgcca gctttgagac aaagaaaatg      1380
     tttacccgaa aatactgtaa agaaagttac cgacttctac gagaatgata ttaacagccg      1440
     aattatgcca cataaaaaag agacagttac tattaagatt gatgaccaca aaaaaaagat      1500
     acagaaacga ttactactta gtgatgtgaa atctctgcat atcgaattta aaaaactgaa      1560
     tcctgagcat ccaatcggct tgactagatt ttcagagctt agacccaaat actgtgtact      1620
     cgcaggggca agaggtacac acagtgtatg tgtttgtacc gatcatcaaa actttaaagc      1680
     gatgcttgat gctattgata taaaaagatt gacaaataac ttgaaaaatc cagtaaataa      1740
     cttcaaagat tgttttccat ttgtcgtatg taaaacacca acacctgcct gctatttaag      1800
     agattgcgag tcttgccctg atattggaag attctctgat tacattacta aacttttaca      1860
     acaaagaggc gtctcagaaa tcatcttcag cacgtggcaa tcgactgata ggtgcactct      1920
     gataaaagaa tgcctttcta cagacgattt cgtctctcaa ttatgtactc gtttagagaa      1980
     attagtacct catcatttta tttcaaaaaa tcaatcgaag tatgtgtcag agcggaagaa      2040
     tagcttgcga ccagaggaag tactagtcca atgtgatttc tcagaaaatt acgcttatgt      2100
     cgctcaagat gctgctcaag catttcatta taataatgat caatgtactg ttcatcctgt      2160
     gttgttttat tatacaaatg aaaaagaagt ttcacacaaa agcattgtac tgttatcgaa      2220
     ttgtacaaca catgacactg ctgctgtgta cgtgatgcaa gaaatactta ttcccgaaat      2280
     cagaaaagtc tgtccaaatg tcaaaaaaat tatttacgtt actgatggcg caaagcagca      2340
     ctataaaaat aaatatcaga tgagtaatct catccatcat aaagaagatt ttggaataga      2400
     agcagaatgg cactgttatg ccacagccca cggcaaagga gcttgtgacg gtgttggcgc      2460
     catttttaag agggaagcta cccgtgcaag tcttcaggct aaatcaacag aagccatctt      2520
     aaactcagca gatctttttg aatgggcaaa aaagaaattt atcaatatca aatttttcta      2580
     ttacagcaaa gagaaacata taaaaattca gaaatttctt gcgaaacgat tttctgaagc      2640
     tccgcgagta atgaaaatcc aaagtgggca tgctttcctt gtcattaaag gaaaaaaatt      2700
     gcaagtaatg cgatactctg gtgccattga accaatggtc attgtagagt attagaatcg      2760
     ataatacaca acaattataa tactcacctt ttatgtactg attccaaatc cggccatttt      2820
     aaatccgcca ttttgaattt tgtaattttg tctccagatt cgtaatcaac gacctcg         2877
//
ID   Sola2-3N1_LMi repbase;    DNA;    INV; 3259 BP.
XX
AC   .
XX
DT   02-JUL-2014 (Rel. 19.12, Created)
DT   02-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-3N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3259
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3302-3302 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
SQ   Sequence 3259 BP; 992 A; 602 C; 632 G; 1031 T; 2 other;
     gggccattcc gtgccaagtg gtctaatatc gagaaaagtt cccacatgac cctcatggat        60
     tttgatgaaa tttkgtatga acaatcacac atgttctcaa tgaacactgg taaagtttca       120
     gtttcaaaaa ttcaatactt ccggagatac agtcacttgt ttaagaccat agcacagctt       180
     ccaatagtgc gtccttgaat tttcagcaac tttgagatga tatatctctg ggagtattcg       240
     catgaaagaa acaaaacttg gccatcttat acaactttta gagctcttta aagtaaaata       300
     ttaagaacag gatttctgag caattttcat atgaatttgg ggcaaggcgc ttgtttttta       360
     atctccagaa tgttccccgc cccccccgcg cccccattca tagtcatttg tataagtgct       420
     gtatgtctga aaaatctgtt gcgaatgtaa ttagtagtaa agaaataata gattaaaact       480
     tggtgcatga tggggcgctt ttccatgaat gttactgttt atgtgctcgt atctcatgaa       540
     ctacgtgtcg tactgtgata caatttagaa ggtatattca actatatgtg tgtatactgt       600
     ttgtaaaata ttctgcaggt acaatatata gtgtagaaat tataaatttc aacatcatgc       660
     cgaatgcatt actgatctgg cattgttatc tatcaacaaa ataacgcccc aagtaacaaa       720
     atacctcgat acaaacgtct tgttgcgcat gaaatacatg acataaaaac aatagttcga       780
     acaacaattt tgaaacacat attttgatgg ttagtgccct gtattaattc agaaaacact       840
     gaattttaat ttttccaaaa cttaattcgt aatgtgggaa tgatagggtt aacgatgtat       900
     agcagttgta aacggaacaa actagtaaaa gttttgatca aaaatctggg tccaaaaatt       960
     tatcgattta gttgtaatct aaatctgaag atagatcact ttgtagtaac gttgacctgt      1020
     ttgctgtata ggagctttct catgggcaat gtttacatgt aatattgcca tgtaatgggg      1080
     cacgttaaat agtaattaaa taaaaaaaaa taatgggcaa tgtttggtgt attcttcgac      1140
     gcgctctctc ctacattgcc gaggacgtcc ttttcagaag ggagaatgca cgcctctgtg      1200
     atgcgtctca gtatcggtgt tgcgcttttg gagtcgtggt gcgcgctgtg tgctgatcct      1260
     gtcacccagc ttcatgttta tattcgcatt gcgaatatac cggcgcggcg ggtcgctgga      1320
     aaaccagcat cgttgttttg tcgctatgta aatctgacgc tgcggcatct cggtgtgttt      1380
     ttagagcaaa tcacgcactg caacgctcca ctgcctaaca ttcacatact gctgaaattt      1440
     tggaaagttt tagtttccta caatatgcag tagctgtcta ctacagctaa aaaaagtctt      1500
     aataacttgt aagccagacg ttgaacattg aaacggttac atggtttcta tgaaaaggta      1560
     aaaaaaaaaa acgtccatga aaagaatcgt agcaaagggt atatatgtat ataaatatgt      1620
     atattgtgtt cgaaagatgt gtcccattgt ttgagaggtt agtactaccc aacaaaccaa      1680
     ggaaaaagtc aaataaccct taatccggaa tcgcatactt tctgagttat gcacatttgt      1740
     tcgtagtgag tcaagacatt tggttgagaa tgttcgcctc tgtgatagag aaggtaaaca      1800
     tttaggaaac aaaaaccgta ctgtactgga tggatatgtc gttggctacg tgttccgtca      1860
     acagggttca ccactgtcgc ctacatgtct cgttgcatct aacaaggaga cggcacgagc      1920
     gtggagtagg ggacttgtcc gaaattttgt gtggtgaaag aggaccccta acaccgcacg      1980
     tggttaaaat attaggacgc accactcgga aaatgatgat tacgtctccc tatgtaggtg      2040
     gatgttaaca agatgtgttc gtcttcgaag ggaaagttgg tgaaacaaat tcaacaaata      2100
     aatctcgccg caacgtataa agcatttctt ttaaagattt ccaccccaac tcgtgcatca      2160
     tttcccccat accgcgaaag tacaaaacga gctacccttc tgtggacttt ctccgtcagt      2220
     tccacttggt gggcatctca caacgcgcag cagaactctg aaacaggacg cataattgta      2280
     gagtaagcag tctctttagc acaattgttc ttctaagtgt tctgctaatg aaacgtagac      2340
     gttggttcgc cttccctaca atacttgtct gttcttttca atttacaatt tcgttatggt      2400
     tattcctaga tatttagttg agtttattgt ctcgaaattt gactgattta tcttgaaaac      2460
     gaagttattt aaagactcat atggacacat ttcattattt agggtcaaat gccaattttt      2520
     gcaccatgga gatatctgtt taaatctttc cagtgcgcct ctaggattat gctacttttt      2580
     agggccttat atgcttgcat tgcaaaacca aatccacttt tctagatagt ttagaatatg      2640
     ctctttctaa tgagcatagt ttaaaggagt ttggagaaaa cacttttttg aaaaatttga      2700
     ttaaaaatac ccatttttag cactttttga aaaatcgtca actttaccct agatttgtga      2760
     aataatggga agcattagga gaatgaaact ttatattctt agaccttctg ttggtgagtt      2820
     gtggtgtgca aagtttcatg tacatcccac aattactttt ctggagatat aaaaaactaa      2880
     agttcgcact ttttttaacc agcaattttt tcgcccaast ttgccccaaa ttttctatat      2940
     gaaaattgct cagaaatcct gttcttaata ttttacttta aagagctcta aaagttgtat      3000
     aagatggcca agttttgttt ctttcatgca aaaactccca gagatatatc atctcaaagt      3060
     tgctgaaaat tcaaggacgc actattggaa gctgtgctat ggtcttaaac aagtgactgt      3120
     atctccggaa gtattgaatt tttgaaactg aaactttacc agtgttcatt gagaacatgt      3180
     gtgaatgttc atacaaaatt tcatcaaaat ccatgagggt catgtgggag cctctagacc      3240
     acttggcatg gaatgaccc                                                   3259
//
ID   Sola2-3_AAe repbase;    DNA;    INV; 4780 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-3_AAe.
XX
NM   Sola2-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4780
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1301-1301 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 4 bp TSDs. TIRs are ~1050 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1368..1991,1995..2789,2656..2952,2956..3516)
FT                 /product="Sola2-3_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MSKNREIVVPKKSFCCNPLAKANHKSWRKTTKLTKVT
FT                 QKVIDSVESIESAIVPNLRDKICVSCRVEVTRQQNTVPMDPMDVVENEIED
FT                 CMEHSANISAEEFQSMMDILLRLGIQNFRVRELRLKNFRCQMLKQAVDALK
FT                 HLLKVDCPVYYEDTDVPVIKDMIDNCKTASKPIKFQILTLLTPSWSRQKMM
FT                 DETGCSKYANYNKRLDLILNSAGKWFVEKSQKVRATKGILKLPDPGTSILD
FT                 SEKEAQEKAKQYFLECSTLMPGVRDKISVKTSSGRECRQKRLLLGSLNEIF
FT                 ANFKELSPDSKIGFSSFAKLRPPECVLTGSSGTHTVCVCMKHENIELSLRA
FT                 VKALGMMKDSCLNELIANNLICKSPSPQCYFLECEKCPDLSEFSDKLLEEI
FT                 VNFPLEIIKFKNWIQIENHYQLVDNTTSTPEEFVDNFSSLLNGFLPHFFIT
FT                 KVHRFKKLIASIYYTSNIRRHKKTIFSSIISAVCSTGFCRIFLSRRYIGLK
FT                 NSLPQYIILLISAGTKRLSFRAKVKSETKRGYRTRRLRRKLQNYCPERDTI
FT                 APFREGNGNNSSICAVLQCQRKASSNIIIISPVLEHNYVLVHCCFRKLFDF
FT                 IKTNFAQITTTHVFTDGAGSQYKNKYNFTNITFMKKDFQMNVEWNFHASSH
FT                 GKCPCDGVAGTIKRAAYKYSLAPNRDNLISDASTFYDWAVEHQGETMSFSY
FT                 VEQIEYEASLAKLKLRMENVQAIKGTHMYHYFLPQDEYKLISKRYSKSTES
FT                 IVQNLKCK"
XX
SQ   Sequence 4780 BP; 1562 A; 885 C; 897 G; 1436 T; 0 other;
     gagcaattct cgctgaaacc aggccgccat cggcacgcat cgttagaatt ccaattttat        60
     gtcactgatc gctagttttc gataaaactt aagggtggtc ctttcggttt tctcaaattt       120
     gtggacccct cgttcgccag ctagctaaac agtttgcgaa aaagcacatt ttttgataaa       180
     tctaaggtat ttcaccacgt gatatgtctg atatttctct tgaaacacat agtaaactta       240
     atggcatcgt atagaggaag gatgtagctt tcatttgatg ggaaaaaatt tttggccgcc       300
     attttgaatt tggccgccat cttggatttc gtcagaaaaa ccgttttttc accattagcg       360
     caccgctcgt tttgaattct gaggtcacca tcagaaagct gagaaaaaac tgagtaagat       420
     aggctacaga aactaggtgt gcaatggtat ttaccctatg aaatgaacga ttttttaaat       480
     catgttctac gattttgacg tatatggcga gtgcaatcaa tgcaattatc attgttcgta       540
     caacaaagta acatgttttc aattgctggt acttttctcg agttgagtga agaataggac       600
     attaatttgg agtgaaaaaa aaaactggcg gccatcttgt atttcgacgc catcttggtt       660
     ttgagcttaa aaattaatat tttaccgtgt tggctatatt ttggctatat tttgaggctt       720
     gcgttgaaaa accaatcagg tttttcatcc tatactttcc agcattggca ttacatcccc       780
     attgtgacat agcctgcttc tcagcttttt aattctgaca tttttttata tgtgtttcgc       840
     gctgctgtca ataaatcagt gaaacgtgca tggcggtcgc aatgaaagca aacatcgctt       900
     atactgtaga gctacaatcg tttgtactgt agagctacaa tcgctcatta ttctatagaa       960
     ttgaatgaag aacagtactt ttattgagaa aaaatggcac ccattttaat tttggatgtc      1020
     atcttacttt tagaaaatcc cgatttttgc cctgttcgca ccaacgattt atatttcgat      1080
     gcacccgttg aaaaaatatc atattgctgt aatcatttat tattcaaacc cagattcagg      1140
     ttgaaatcct ttatcgaagt caagcaaatt tccagccgca gaaaaatcca cttgcggact      1200
     ttaccataac catcgcgctc ccagtgagca acaggacata tggtttaaat cacaggctta      1260
     tcctttcaat catcagtttc attgcaaaga agaaggcaag tatttcttta aaactgcgga      1320
     agcaagttca ttgatttgta catccgttga attgaaattc catcaacatg tcgaagaatc      1380
     gcgagattgt ggtacctaaa aagtcattct gctgtaatcc gcttgcgaaa gctaaccata      1440
     aaagctggag aaaaactact aaactaacga aagttacaca aaaagtaatt gattctgtcg      1500
     aatcaattga atctgcgatt gttcctaacc ttcgagacaa aatatgtgta tcttgccgtg      1560
     tagaagtgac gcgtcagcag aatactgttc ctatggatcc gatggacgtt gttgaaaacg      1620
     aaattgagga ttgtatggaa cacagtgcaa acattagtgc ggaagagttt caaagcatga      1680
     tggacattct attgcgactt ggcattcaaa atttccgtgt cagagaatta agattaaaaa      1740
     acttccggtg tcaaatgctt aagcaagcgg tggatgcact taaacattta ttgaaagttg      1800
     attgtccggt ttattatgaa gacactgacg tacctgttat caaagacatg atcgataatt      1860
     gtaaaacagc atcaaaaccc atcaaatttc aaattttaac tttgctcacg ccttcttgga      1920
     gtagacagaa aatgatggat gaaactggat gcagtaagta tgctaattat aataagcgtc      1980
     ttgatcttat ttgactaaat tctgcaggta aatggtttgt tgaaaaatcc caaaaagttc      2040
     gtgccacaaa aggtattttg aaacttccag atccaggtac atcaatctta gattcagaaa      2100
     aggaggctca agaaaaggca aaacaatact ttttggaatg cagtacgtta atgcccggtg      2160
     ttcgagataa aatcagtgtc aaaacgtcca gcggtcggga atgcaggcaa aaacgtttgc      2220
     ttcttgggtc actcaacgaa atatttgcaa acttcaaaga gctttcgcca gattcaaaaa      2280
     ttggattctc ttcgttcgcc aaattgcgac caccggaatg tgtacttacc gggagctccg      2340
     gtacgcatac tgtttgtgta tgcatgaagc atgagaatat tgaattatcc ttgcgtgctg      2400
     taaaagcctt agggatgatg aaagatagtt gcctgaacga gttaattgct aataatttga      2460
     tatgtaaaag cccttctcca caatgctatt ttttggaatg cgaaaaatgt cctgatttga      2520
     gcgagttcag tgataaattg ttggaagaaa tcgtaaattt tcctcttgaa atcatcaagt      2580
     ttaaaaattg gattcaaatt gaaaaccact atcaattagt tgataacacc acaagcacac      2640
     ccgaagagtt cgtagataat ttcagcagtt tgctcaacgg gtttttgccg cattttttta      2700
     tcacgaaggt acataggttt aaaaaactca ttgcctcaat atattatact tctaatatcc      2760
     gcaggcacaa aaagactatc ttttcgagct aaagtcaaat ctgaaaccaa acgaggctat      2820
     cgtacacgcc gacttcgcag aaaactacaa aattactgtc cagaacgaga tacaatcgca      2880
     ccatttcgcg agggaaatgg taacaattca tccatttgtg ctgtactaca atgtcaacgg      2940
     aaagcttcat cataaaacat tatcattatt tctcccgttc tcgagcataa ctacgttttg      3000
     gtgcactgct gttttagaaa attatttgat ttcattaaga caaactttgc acagataaca      3060
     acgacccacg tgtttacaga tggagctggc agccaatata aaaataagta taatttcaca      3120
     aatatcacat ttatgaagaa ggattttcaa atgaatgtgg aatggaattt ccacgccagt      3180
     tctcacggaa agtgtccatg tgatggagtg gcgggaacga tcaaacgtgc tgcgtataaa      3240
     tacagcttgg cgccaaatag agacaatcta atatccgatg cttcgacatt ctatgactgg      3300
     gctgttgagc atcaaggcga aacgatgtct ttcagctacg ttgaacaaat cgaatacgag      3360
     gcatccttgg ccaaactcaa gcttcgaatg gagaatgttc aagcaataaa aggtacacat      3420
     atgtaccact attttctacc acaagacgaa tacaaactaa tatctaaaag atattcgaag      3480
     agtaccgaga gtatagtgca aaacctcaaa tgtaaataat aaggatgtgt tttgtataat      3540
     ttaaggtaac attgttatga ttatttttat cgatataatg aactcaaatg tatatgaaga      3600
     attaaaaata ttgtaaaatt cgtaaaaatt tgctagaaaa taaaaactta taaattgatt      3660
     gaagtacacc tatttactat tcctaatcat aatacatact tgatagctaa ttcaactcat      3720
     atttttcatt ttaagttccc aacaatgcat cacaatatat cttgttggtg cgaacaaggt      3780
     gagaccggtg atggatttct aatagtgaaa tatcattaaa attatatatc ttttattgat      3840
     agcattgttc tccattcaac tgcaataatg agcgattgta ctgtagagct gtaagcgatg      3900
     tttgctttca ttgcgaccgc catgcacgtt tcactgattt attgacagca gcgcgaaaca      3960
     catataaaaa atgtcagaat taaaaagctg agaagcaggc tatgtcacaa tggggatgta      4020
     atgccaatgc tggaaagtat aggatgaaaa acctgattgg gttttcaacg caagcctcaa      4080
     aatatagcca acacggtaaa atattaattt ttaagctcaa aaccaagatg gcgtcgaaat      4140
     acaagatggc cgccagtttt ttttttcact ccaaattaat gtcctattct tcactcaact      4200
     cgagaaaaga accagcaatt gaaaacatgt tactttgttg tacgaacaat gataattgca      4260
     ttgattgcac tcgccatata cgtcaaaatc gtagaacatg atttaaaaaa tcgttcattt      4320
     catagggtaa ataccattgc acacctagtt tctgtagcct atcttactca gttttttctc      4380
     agctttctga tggtgacctc agaattcaaa acgagcggtg cgctaatggt gaaaaaacgg      4440
     tttttctgac gaaatccaag atggcggcca aattcaaaat ggcggccaaa aattttttcc      4500
     catcaaatga aagctacatc cttcctctat acgatgtcat taagtttact atgtgtttca      4560
     agagaaatat cagacatatc acgtggtgaa ataccttaga tttatcaaaa aatgtgcttt      4620
     ttcgcaaact gtttagctag ctggcgaacg aggggtccac aaatttgaga aaaccgaaag      4680
     gaccaccctt aagttttatc gaaaactagc gatcagtgac ataaaattgg aattctaacg      4740
     atgcgtgccg atggcggcct ggtttcagcg agaattgctc                            4780
//
ID   Sola2-3_LMi repbase;    DNA;    INV; 3681 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3681
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3303-3303 (2014).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1274..1420,1424..1846,1850..1996,2000..2377)
FT                 /product="Sola2-3_LMi_1p"
FT                 /translation="MVVDEFIEDVKNKIWSLSCHHYIAKHQSLHLKGLKCH
FT                 LKDEELVVLMDFENYSFVIQDAVQGFHWDNSQATIHPFVIYFRQNEKVESL
FT                 SFCIISDCLRHDTVTVHVFIKELIKYIKARFAQISHIHYFIDLSSAQYKNF
FT                 KNFLNLCYHKSDFGMTAEWNFFATSHGKSPCDGIGGTTKQLAARASLQRLP
FT                 ICFTSALKTLMELNLFSSVKMKLKKNIVSQEERFKLGQTVAGTRENHHFPI
FT                 DETVSRVSNDCSSFLAKMGHRTEGGILMSALQPGQYVACIYENVWWIGNIC
FT                 ETSTEQRDALINFMHPHGPANSFYWPPRSDKCWVPEHHIIAVIPAPSVNSS
FT                 GRQYTIPLDIHQKINVEYQKLK"
XX
SQ   Sequence 3681 BP; 1215 A; 615 C; 683 G; 1168 T; 0 other;
     gggccattcc gtgccaagtg gtctaatatc gagaaaagtt cccacatgac catcatggat        60
     tttgatgaaa ttttgtatga acattcacac atgttctcaa tgaacactgg taaagtttca       120
     gtttcagaaa ttcaatactt tctgagatac agtcacttgt ttaaaccata gcacgcttcc       180
     aatatgcgtc gtgaattttc agcaactttg agatgatata tctctggtag tatttgcatg       240
     aaagaaacaa aacctggcca tcttacacaa cttttagagc tctttaaagt aaaatattaa       300
     gaaaaggatt tctgagcaat tttcataaga taatttgaag caaagttggg caaaaaaata       360
     gctggttaaa aaaatgcgaa ctttagtttt ttatatctcc gaaagtaatt gtgggatgta       420
     catgaaactt tgccaccata actcaccaac aaaggtcttg aatataaagt ttcattctcc       480
     tgttgctttc cattatttca caaatctagg gtaaagttgc cgatttttca aaaagtgcta       540
     aaaatgggta tttttagtca aattttacaa aaaagtgttt tctccaaact cttcaaacta       600
     tggtcattag aaagagcata ttctaaacta tctagaaaag tggatttggt tttgcaatgc       660
     aagcatataa ggccctaaaa agtagcatca tcatagaggc gcactggaag tttgaacaca       720
     tttttctggc actcaaatta tacctgaaat cttttattat gcctaataaa tgtttattaa       780
     tgtctgggat aagttaaata aaaagatctg gtaaataggc aatgacactg tcagaaaaac       840
     ttaaaactat gagaagtagc ccttctgctt ttatcgcaag tgttcatctg cataaaactc       900
     ttctcatttg taaaaagaaa aaggggatca taaagaattc aatgaataat agcttcatat       960
     ttttttactt ctcaaaattg gaagtattta caagtggaaa atgaagacct aattgttgga      1020
     ttcaattgta taaaacattt ttccagaaaa gaatcggttt gcttgaatca tgcatcaagt      1080
     gatgtaaact ttccaatcaa tattgcagat tttaatacct aggtgttgta acctgtgaat      1140
     ttttgtctta aagttattag ggaaacatgt gaaatctgaa attgccagtt atttcctaga      1200
     tcatgagcca caggaagtta ttgtgtttaa gcaaaggatc catactgatc gggccacact      1260
     ggacacgaag caaatggtag tggatgaatt tattgaagat gtaaaaaata aaatatggag      1320
     tctgtcatgc catcattaca ttgccaagca tcaaagcttg catcttaaag gccttaaatg      1380
     tcatctgaaa gatgaagagc ttgttgtgct aatggatttt taggaaaatt attcttttgt      1440
     cattcaggat gctgtgcaag gcttccactg ggacaatagt caagcaacaa ttcatccatt      1500
     tgttatctac tttcgtcaaa atgagaaagt ggaatcttta agtttctgca ttatcagtga      1560
     ttgtttgcgg catgacactg ttacagttca tgtttttatc aaggagctca tcaaatatat      1620
     aaaagcacgg tttgcacaga tatcccacat tcattatttc attgatctct ccagtgctca      1680
     atataaaaat ttcaagaatt tcctaaattt gtgctatcat aagagtgatt ttggaatgac      1740
     agcggaatgg aatttttttg caactagtca tgggaaatca ccttgtgatg ggattggggg      1800
     tacaacaaag cagttagcag caagagcaag cttgcaacgg ctcccctaga tctgtttcac      1860
     ttctgctctg aaaacattaa tggaattaaa tttgttttca tcagtaaaga tgaaattgaa      1920
     aaaaaatatt gtgtcacaag aagagaggtt taaacttgga caaactgtag caggcactag      1980
     agaaaatcat cacttttgac ctattgatga aacagtcagc agagtttcaa atgattgttc      2040
     atcttttcta gctaaaatgg gtcacagaac tgaaggaggc atattaatgt ctgctctcca      2100
     accaggacaa tatgttgcat gcatctatga aaacgtgtgg tggattggga atatctgtga      2160
     gacttccact gagcaaaggg atgcattaat aaactttatg cacccacatg gtccagcaaa      2220
     ttcattttat tggccaccaa gaagtgacaa gtgctgggtt ccggaacacc acattattgc      2280
     agttattcca gctccatcag taaattcgtc tggccggcaa tacaccattc ctcttgatat      2340
     tcatcagaaa attaatgtag aatatcaaaa attgaaatag gttagaggaa acaatctaag      2400
     gaacctaaga gtggcttcta attttaccca gggcacttaa ataattttac tatcaggctt      2460
     gggaacctgt gtaaagaaac ccttattagg cttgggattc agtggtaaag aaacccaccc      2520
     atggctgttg ttgctaagct atcgggcgtg gcccctatgg cgatggggat gctggttttc      2580
     tcaggtgaaa tgaaactagc agtggttaaa ccaccatgga ccatagcaac tcatttatac      2640
     acttcttttc catcagtaag ctagtgttgt tcattaaaca ggctactaat aattagataa      2700
     tgattatgca aaaattatgc aataaatttt acgacttaca ttcattctaa ataagtgtgt      2760
     gtgtgtgtgt gtgtgtgtga gagagagagg gggggggagg aggggtgaca ataagaaata      2820
     acatagtttc tatttttctt tcactatttg gacttaagct aagtcctatt catcaggact      2880
     tcttatttaa ctatcccaga cattaataaa catttattag gcataataaa agatttcagg      2940
     tataatttga gtgccagaaa aatgtgttca aacttccagt gcgcctctat gatgatgcta      3000
     ctttttaggg ccttatatgc ttgcattgca aaaccaaatc cacttttcta gatagtttag      3060
     aatatgctct ttctaatgac catagtttag aagagtttgg agaaaacact tttttgaaaa      3120
     tttgactaaa aatacccatt tttagcactt tttgaaaaat cggcaacttt accctagatt      3180
     tgtgaaataa tggaaagcaa caggagaatg aaactttata ttccaagacc ttgtgttggt      3240
     gagttatggt ggcaaagttt catgtacatc ccacaattac tttcggagat ataaaaaact      3300
     aaagttcgca atttttttaa ccagctattt tttcgcccaa ctttgcttca aattatctat      3360
     atgaaaattg ctcagaaatc cttttcttaa tattttactt taaagagctc taaaagttgt      3420
     ataagatggc caggttttgt ttctttcatg caaatactac cagagatata tcatctcaaa      3480
     gttgctgaaa attcaacgac gcactattgg aagctgtgct atggtcttaa acaagtgact      3540
     gtatctcaga aagtattgaa tttctgaaac tgaaacttta ccagtgttca ttgagaacat      3600
     gtgtgaatgt tcatacaaaa tttcatcaaa atccatgagg gtcatgtggg agcctctaga      3660
     ccacttggca tggaatgacc c                                                3681
//
ID   Sola2-3_NVi repbase;    DNA;    INV; 4122 BP.
XX
AC   .
XX
DT   16-FEB-2009 (Rel. 14.02, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola2 DNA transposons from Nasonia vitripennis.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-3_NVi.
XX
NM   Sola2-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4122
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Nasonia
CC   Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(911..1210,1264..3204)
FT                 /product="Sola2-3_NVi_1p"
FT                 /translation="VHSLSSLQDHLVSTFQKYIICRFKDYTYQISIEILST
FT                 VLFRTSLNSPSHDYSQQSFSGLRPTLLFRTFLTSPSHLYSQQSFSGLVSTV
FT                 LLRTSLNSPFQDSHQSSSRLHSTVLLRTSLNSPSQDYSHQSFSRLLSTVLL
FT                 RTSLDSPSQDWSQQSFSRLLSTVLLRTNLISFLNLTISIVLNMSNIRSDRC
FT                 CNPYDLEGHKGKDLRRISIGVKRSFPSFPDNAKICASCRKIKHPRMDEGLF
FT                 DSSSFMNLTLNPHKAEQNIPESPGVSSSSSSRMEANVKSQREIELEDLLNG
FT                 LKAKFSTLDINDPLRLTILTVVPDAWSLNKTSREFNCSRQLAKKARDLKAS
FT                 KGVLADTTAKNGRPLPNNTVVQIDNFYNSDEHSRIMPGIKDVVSVKNDDGR
FT                 HLSQKRLLLSDLRSLYDTYSKLCPEYPVSFSKFAQLRPKHCILAGASGTHS
FT                 VCVCTIHQNCKLMIDSVNLNKLADSDMVLHDYKDCLRQIVCQNSDANCFLG
FT                 ECIKCPGINEFDKHLKELLERENIHHVQFSVWTTTDRATLETQIRSSSEFV
FT                 DELCEKLIKLKPHSFIAKQQSRYYQEKKENLEEREFLVVLDFSENYKYVAQ
FT                 EASQGFHFNNSQCTVFPIVCYYKNGLKIEHKSFIFLSNSTLHDTAAVYTVQ
FT                 KLLDPELKKINSELSKVIYFSDGAKQHFGVRAEWHFHATAHGKGASDVLYS
FT                 KEKLYELVFFVNQMTPLLHSRNLSTGLRKIPKIFMHYLTMTKITTK*"
XX
SQ   Sequence 4122 BP; 1359 A; 780 C; 700 G; 1283 T; 0 other;
     gaggcattct ttcccaacgt tacacccctg ctgcccactt tttatttcat gtaaaaattt        60
     tcaaaaaaat gttaaatttt gtagaaaatt ctcagctttc gaatggcgag tggcaaaatc       120
     accagtgtta atcggattat cctgaaaatt caaaaaaacc gtaaattaag gatggaaaat       180
     ttattgtaat ggcatcctac taattctgaa cttgctatac gagtattatc caataggtaa       240
     cagcctcttt tcactataaa atacctcgac gaaccgttca aatggtctca aattggttct       300
     ggaaaaattt agatcctgaa aatagaaaaa aaatgacaaa aagttgttct ttctgtgtag       360
     ttatgacaat cttggtgtca gaaagaggta ttagacaacc tttagttaac ttacaaattt       420
     gagaacacgt tggaaggttc tcaacatcac tccttctttt gccaaaaagc caaaataata       480
     atgcgaagat tcatttaaaa aatagaaaag ataatgacta tttttgtgat gataattcat       540
     cagtcggata attttgatac aagaatgaaa ctttgttacc aaaaagtatg atataactaa       600
     cgaaatatta ttacacttaa atctcacaca tatcttaatc cccaacgtaa caagacaagt       660
     ctaatatttt atcggattac atggacacga ataaaaaatc gtgagtacat gaatgctaaa       720
     tcttcaagat gaaatgttca atagaatatc cgggtatgat ttgaatttcc tgattacaca       780
     agtctggttg acttaactgg ttctgctctg aaaccatagg tgtatactgc aaaacatcat       840
     tctgaataat tttatttgaa attgattgtt gagagatttg gccaatgtga aatcatactt       900
     cattttttaa gttcattcgt tgagttcttt gcaggaccat ctcgtcagta ctttccagaa       960
     atatataatc tgtcgtttca aggactacac ttatcagatc tctatagaaa ttctgtcaac      1020
     agtccttttc aggactagtc tcaacagtcc ttctcacgac tactctcaac agtccttctc      1080
     aggactacgc ccaacactcc ttttcaggac ttttctcacg agtccgtctc acctctactc      1140
     tcaacagtcc ttctcaggac tagtctcaac agtccttctc aggactagtc tcaacagtcc      1200
     ttttcaggac tagtctcaac agtccttttc aggactagtc tcaacagtcc ttctcaggac      1260
     tagtctcatc agtcctcctc acgactacac tcaacagtcc ttctcaggac tagtctcaac      1320
     agtccttctc aggactactc tcatcagtcc ttttcacgac tactctcaac agtccttctc      1380
     aggactagtc tcgacagtcc ttctcaggac tggtctcaac agtccttctc acgactactc      1440
     tcaacggtcc ttctcaggac taatctcatt agctttctga atctcacaat ctcaatagtt      1500
     ttgaacatgt caaatattcg cagtgatagg tgttgtaatc cctacgattt ggaaggacat      1560
     aaaggaaaag atcttcggcg tatttcgatt ggggttaaac gaagttttcc aagctttcca      1620
     gataatgcta aaatatgtgc ttcgtgtagg aaaattaaac atccccgaat ggatgaaggt      1680
     ttgtttgact catcaagttt tatgaatctg acgctgaacc ctcataaagc tgaacaaaat      1740
     attcctgaat ctccaggggt atcctcatca tcttctagtc gaatggaagc taacgtcaag      1800
     tcacaaagag aaatcgagtt ggaagatctg ttgaatggat tgaaagcaaa gttttctact      1860
     cttgatatca atgatccttt gagattaacg attttgacag tagttccaga tgcatggagt      1920
     cttaataaaa ctagtcgaga atttaactgt tcaagacagt tagcgaagaa agctagagat      1980
     ttaaaagctt caaaaggcgt tttggcagat acaactgcta agaatggcag gccattgcca      2040
     aacaatactg tggtacaaat agataatttt tacaatagtg acgaacatag cagaatcatg      2100
     ccgggtataa aagatgtggt ttctgtaaaa aatgatgatg gtagacattt gtcacagaaa      2160
     cgccttctcc tttcagattt aagaagtctt tatgatacct acagtaaatt atgtcctgaa      2220
     tatccagtta gtttcagtaa atttgctcag ctccgaccta agcattgtat actcgctggt      2280
     gcgagtggta cgcactcagt gtgtgtctgt acgatacatc aaaattgcaa attgatgatt      2340
     gactctgtta atttgaacaa gctcgcagat tctgatatgg ttttacatga ttacaaagat      2400
     tgtttacgtc aaatcgtgtg ccaaaattct gatgcaaatt gttttctcgg tgaatgcata      2460
     aagtgtcctg gcataaatga gttcgataag catttgaaag aacttttgga gagggaaaat      2520
     atccatcatg tgcaatttag tgtatggaca actactgaca gagcaactct agaaacacaa      2580
     atccgttcgt catctgaatt cgttgatgaa ttatgtgaaa aattaatcaa actaaaacct      2640
     cattctttca tagcaaaaca acagtctcga tactatcagg agaagaaaga gaatttagaa      2700
     gaaagagaat ttctcgtagt gttagacttt tctgaaaatt acaaatatgt tgcacaagag      2760
     gcatcgcaag gattccactt caataattcc caatgcacag tctttcctat cgtgtgttac      2820
     tacaaaaatg ggttgaaaat tgagcacaaa agtttcattt tcttgtcaaa tagtacactc      2880
     catgacacag ctgcagtata tactgtacag aagttgctgg accctgaatt gaaaaaaatc      2940
     aattctgagt tgagtaaagt tatctacttt agcgatggag ctaaacagca ttttggtgtc      3000
     cgagcagaat ggcactttca tgctactgca cacggtaaag gggcttctga tgtgctgtat      3060
     tcaaaagaga agctgtacga gctagtcttc tttgtaaacc aaatgacgcc attattacat      3120
     tcgagaaact tatcgactgg gctcagaaaa attccaaaaa tattcatgca ctatcttaca      3180
     atgacaaaga tcacaacaaa atgacacgat ttttgaacaa aagatttgat gctgctccac      3240
     cagttccaga aattctaaag aaacactgtt tcatacccat taataacaca gaaatgatga      3300
     tcaaaagata ctctgaagat ggcgctacaa cgacattttc atatcaagat ttcaaacaat      3360
     agagtataat agctcaggag atattagaat cataacatag aaaagatata ttgtgaccaa      3420
     cagttttaaa aaatgactac taataacact cagtttcatt aatctatttc aactctcagg      3480
     cctgtttctg atgaactaca atgcaacaaa tttatgaatt tgactatgaa tcacatcaat      3540
     tcattcatat ttcatagtgg agacatttct gaaaaattta tccgactgat gaattatcat      3600
     cacaaaaata gtcattatct tttctatttt tcaaatgaat cttcgcatta ttattttggc      3660
     tttttggcaa aaggaggagt gatgttgaga accttccaac gtgttctcaa atttgtaagt      3720
     taactaaagg ttgtctaata cctctttctg acaccaagat tgtcataact acacagaaag      3780
     aacaacttat tgtcattttt tttctatttt caggatccaa atttttccag aaccaatttg      3840
     agaccatttg aacggttcgt cgaggtattt tatagtgaaa agaggctgtt acctattgga      3900
     taatactcgt atagcaactt cagaattagt aggatgccat tacaataaat tttccatcct      3960
     taatttacgg tttttttgaa ttttcaggat aatccgatta acactggtga ttttgtcact      4020
     cgccattcga aagctgagaa ttttctacaa acattttttt gaaaattttt agatgaaata      4080
     aaaagtgggc agcaggggtg taacgttggg aaagaatgcc tc                         4122
//
ID   Sola2-4_AAe repbase;    DNA;    INV; 4146 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-4_AAe.
XX
NM   Sola2-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4146
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1302-1302 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 4 bp TSDs. TIRs are ~550 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           1173..3308
FT                 /product="Sola2-4_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MSSRFLNCCRPFAEKKCSKELRNLTESTIDKLKAAGY
FT                 APMSTLNTNLRICTSCRLNVDKRAICTSSVDQVAGSSKTTTTEELLDAPTT
FT                 TEELPEVPSADSLATVPSATSVSTNQSEDECIQKVNIERFNEGIAGIKVTP
FT                 IKWTKMGYVNYPEKKYREINEAVRRNLFKLGPEDVENTDYDEVIMNMKERF
FT                 SNLATTRKEKLLILSMLPSSWSIQDAIDEFKTNRNTAKEAKQFKNNCLATK
FT                 NARSSTSLTDETKEKIIQYFEDDEVSRAMPGQKDYVSVKKDGKRQAIQKRL
FT                 MMTTLKEAYTRFKEINENIKVGFSSFASLRPRQCKLLSNSGTHNVCVCTTH
FT                 ENINLILHSLKRINLSKDIKMLTGSLLCENTTSNCYLRSCSDCPDSSSLEN
FT                 TLFAEFEENYIDQLSFEQWVTTDRCDLETIVKPVDEFVSFFCLKLESLIPH
FT                 DFIKTEQSRFLKNTKNTLQDGEFLVICDFSENYSFVLQDEVQSHHWNVQQA
FT                 TIHPFVIYFNGSTQIEHFSFIVISEDLRHDSVSVNLFIAKMINFLRVDKDK
FT                 EIRKIYFMSDGAASQYKNRKNFSSLCQFKSKYGIDAEWHFFATSHGKGPCD
FT                 AIGGTIKRMATRASLAKEREHPIKTAKELFDWANRRKEEDLTKLSFCFTTT
FT                 EEYELTASELSEQYNNAKTIQGTQKFHCFIPLSENKIKAKLYSNCTDNDAK
FT                 VFDIVKKLNNNK"
XX
SQ   Sequence 4146 BP; 1520 A; 668 C; 695 G; 1263 T; 0 other;
     gagggattcc acggaggcat gcaagtcgat tctgatcgac catttcaaaa atatctgaaa        60
     ctttgcacag tttttcagtt ccatctaaat cgtcattttc cgatatcaaa tcttcaagtt       120
     gagtcacgac taacttttca aaagggtgta tgtgaaaatg gttcaaaaat attcaaaaag       180
     ctgcacagca aaaacggttc gttcgattgt tagacaacta aagaaacaaa gttagacaac       240
     taaataaaga ttccaaaaaa aatacacaca gtaaaaaaaa tttttttttg cattaaaaaa       300
     catcattttt gtcacaaaaa ctcaaatatc tcaaaaccct atcggaatac caacgtaatt       360
     ttttgaggga aaacggtcca ttatattagc tatctaccat aaaaatttgg tgatggtaag       420
     ccaataaaca aaaaagttat gacatttcaa atatttcaca aatttgacac ttagtgaatt       480
     tttttttttc attgttaatt ttttttagga ccgcagtttg ttgctgaatt ttttgttaag       540
     ggtaccacat gaggttaaca agttgttttc atgatatttt atttaattat tcataactat       600
     tatagcatct attagaaagt tagacgcgat ccagtgttgt gatctaaagt cttgatagtg       660
     tcatattttt tattgtacgt aactgaagaa aaattctctc aatagtgttg aaaccttttg       720
     ataaaagaaa cctataagaa atctaatatt gaagacaaaa gctacaaaaa aagttttcta       780
     tacaggtata cgactagttt acctgcaaaa agtttacctc gtagagaaca aggcgggtct       840
     atacccaggt gatctagtat acgtaaagca ggtcggtttt ctcggcgctg gttttctcca       900
     caaagttaaa atctgattac acctgggtat agacccgcct tggtagagaa tagactttgt       960
     taatcatatt tgggagaaag cgagtaactt caacaacatc aaaaacatga taggtacata      1020
     ccatgaacat actcacgaaa aagctaaaaa tatactacca ctatggttat aaaagattta      1080
     attgtaaaat ttttcttcag tcaagcaaac gacaccaaac tagtcagtaa aaacttaaaa      1140
     gtgattttgt ttattaaaat ctaacgagca acatgagtag tcgctttctc aactgttgca      1200
     ggccgtttgc agaaaaaaag tgttcgaaag agctacgaaa tctcaccgaa agcaccatag      1260
     ataaactgaa agcggctggt tatgctccaa tgtctacatt gaatacaaat ttacgcattt      1320
     gtacgtcctg ccgtttaaac gttgacaaac gggcaatctg tacatcatcg gtggatcagg      1380
     ttgcaggaag ttcgaaaaca acaacaactg aggaattact agatgcaccg acaacaactg      1440
     aggagttacc agaagtacca agtgcagata gtcttgccac ggtaccatca gcgacatctg      1500
     tttcaacaaa tcaatcagaa gatgagtgca tccagaaggt caacatcgaa cgcttcaacg      1560
     aagggatagc tggaataaaa gtgactccga ttaaatggac gaagatgggt tacgtcaatt      1620
     atcccgagaa aaaataccgt gaaatcaacg aagctgtacg aagaaacctc ttcaaattag      1680
     gacctgagga tgtggaaaat acagactacg atgaggtaat tatgaatatg aaggaaaggt      1740
     tctcgaatct agccacgaca aggaaagaaa aattattgat tttgtcgatg ctgccaagct      1800
     cgtggtctat tcaagacgcc attgatgagt tcaaaaccaa tagaaataca gcaaaagagg      1860
     caaaacaatt caaaaataac tgtcttgcaa ccaaaaatgc taggtcgagt acttcattaa      1920
     cagatgagac aaaagaaaaa ataattcaat attttgaaga cgatgaagta agtagagcta      1980
     tgcctggcca aaaagattat gtatctgtaa aaaaagatgg aaagcgtcaa gcaatccaaa      2040
     aacgattaat gatgactact ttgaaagaag cgtatacacg cttcaaggaa attaacgaaa      2100
     atattaaggt aggtttttcc tcatttgcaa gccttcgtcc aaggcaatgc aagcttctat      2160
     ccaattcagg aacacataat gtttgtgtgt gcacaacaca cgaaaatatt aacctaatct      2220
     tacatagttt gaaaagaatc aatttatcaa aggatattaa aatgttaact ggtagtcttt      2280
     tgtgtgaaaa tacaacatca aattgctatc tacgatcttg ttcggattgt ccagattctt      2340
     catcattgga aaatacttta ttcgctgagt ttgaagaaaa ttatattgat cagttatcat      2400
     ttgagcaatg ggtgaccacg gataggtgtg acctagaaac tattgtaaaa cctgtagatg      2460
     agtttgtgtc atttttttgc ttgaaattag aaagtttaat tcctcacgac tttattaaaa      2520
     cagagcaatc ccgcttttta aaaaatacga aaaatacatt acaagatggt gaatttttag      2580
     tcatttgtga tttttctgaa aactatagct ttgtattgca agatgaagtg cagtcccatc      2640
     actggaacgt acaacaagct acaattcatc cattcgttat ttatttcaat ggaagtacgc      2700
     aaattgaaca ttttagtttt attgtaattt ccgaagattt aagacacgac tcagtatctg      2760
     taaatttgtt cattgccaaa atgattaact ttttacgcgt tgataaggat aaagaaatca      2820
     gaaagatata tttcatgtct gatggagcag catcgcagta caaaaaccgt aagaattttt      2880
     cgagcctatg tcaatttaaa tcaaagtacg gaattgatgc agaatggcat ttctttgcta      2940
     cgtcacatgg caaaggtcct tgtgatgcta ttggaggaac cataaagcgc atggccacaa      3000
     gagcaagttt agccaaagaa cgtgagcatc caattaaaac tgcaaaagaa ctatttgatt      3060
     gggcgaatcg cagaaaagaa gaagatttaa caaaattatc attttgtttt actactactg      3120
     aagagtacga attaacggca tcagagctca gcgagcaata taataacgcg aaaacgatcc      3180
     aaggaaccca aaaatttcac tgtttcattc cattgtcaga aaataaaatt aaagcaaaac      3240
     tatactcgaa ctgtactgat aatgatgcaa aagtgttcga tattgtaaaa aaattgaata      3300
     acaataaata aataaataag tattaataaa atgttttcat gatctcataa cgcataccca      3360
     aatccaaaac ttttaaagtt tatatataac atttagaaac tcatcgatca tactctaaaa      3420
     aaaaatatcc tggtaaaaaa aaaattattt tcgtgtaatc tgttaattca ttttaattta      3480
     tacatatata catatacata taatatttat acatatacat aatatttata catataatat      3540
     acataatact aatgaataca tgaaaacgac ttgtttaatt cacgcaaggc ccttaacaat      3600
     aaaatcagca acaaactgcg gttcccgtaa taatttacac cgaaaaaaaa attttttttt      3660
     ctactaaatg tgaaaattgt gacatgtttg aaatgtcata acttttttgt ttattggttt      3720
     accatcacca aatttttatg gtagatagct aatataatgg accgttttcc ctcaaaaaat      3780
     tacgttggta ttccgatagg gttttgagat atttgagttt ttgtgtcaaa aattatgttt      3840
     tttaatgcaa aaaaaaattt tttttactgt gtgtattttt tttggaatct ttatttagtt      3900
     gtctaacttt gtttctttag ttgtctaaca atcgaacgaa ccgtttttgc tgtgcagctt      3960
     tttgaatatt tttgaaccat tttcacatac acccttttga aaagttagtc gtgactcaac      4020
     ttgaagattt gatatcggaa aatgacgatt tagatggaac tggaaaactg tgcaaagttt      4080
     cagctcaata gaaaaaaatg aattaaaaaa tttaccaaat tttggtgctg ttgcttggaa      4140
     tcactc                                                                 4146
//
ID   Sola2-4_LMi repbase;    DNA;    INV; 4413 BP.
XX
AC   .
XX
DT   15-APR-2014 (Rel. 19.12, Created)
DT   15-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4413
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3304-3304 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1030..1800,1751..2245,2272..2445,2475..3563)
FT                 /product="Sola2-4_LMi_1p"
FT                 /translation="MDEQCSIGQFVNEVCHKSCYGLISKELKHLNEFDDSV
FT                 QELFKLRVSNSVSSICEYHEKKYILKYNHLFGKYCLDPLKIHKKRIITDLR
FT                 EIKLEHLSLLKISNCNEKLIPGKSLCRNCFVKIFVSNQMPNVITGNDCEDD
FT                 IYIPEDEIVQQMDSACSILGVSPPPKIRKLSSEKRQTAIESKIQRVSDKLR
FT                 KNLQTCFDNVSKTTTTEQKKGDSDTEYFYLIEKLKEKCSLSSKEEKVKILS
FT                 LLPDSWSKEKKNCYRIACFLIRGQKKKKIATEFEVSDRLIRLTRNLMKEQG
FT                 ILPTLGSKKGVGISKETVEKVKQFFESDENSRMCAGKKQYTRVFIDGNKVV
FT                 KQKRLVLCNLNELYMAFKTSHPECKIGRSKFCELRPKWCILAGSSGTHSVC
FT                 VCVCVCVCVCVLLFVSPECQTDDRQTQCWCVTINNYDCMMGLCKSCPGKEP
FT                 LLEMLNDTVEDLPDSVEYKQWVTTDXAEMVTVIKKQVGNPKKSSLCFKNSR
FT                 TVFREKKESLSETECLILADFAENFTYIVQDAVQGQHWANDQATVHPFVLY
FT                 FKNEDDKLISRSICVLSDYLEHNTAVVHAFQSHIINYIKENLPKVVKVIYF
FT                 SDGSGSQYKNRKKFTNICNHKADFQLEAEWHFFASCHGKNACDGVGGTTKC
FT                 EVSKASLQRITTDQILNIEQMYTYCKGNIKGITYFLVRKEEILTHIEKLRT
FT                 RFENCLKIKGTRNFHKFHTVGENTIRCYKTSTTKNYEDHCTSKIVSLTLEV
FT                 NDTVACVYDGQWWIAQIEQISLEHNDVHVHFYHPSTRTSFKKSASDRVWIP
FT                 ISNILRRISVLELTTATGRSYSISTKLSEEISVLLNGHLNL"
XX
SQ   Sequence 4413 BP; 1572 A; 648 C; 767 G; 1425 T; 1 other;
     gggtcaatcc atatgaagtg acccaaaaaa tattttacag gttgcttgac cattttctat        60
     ttttgtgatt ttttatgttt atatatagta aaaacctaac ggaaaacagg tttcaatttt       120
     ttttatcttc aaccatttca gagaagcggc cgtttttgtt gaactgtggg gccatatttt       180
     acgctttaca gacatttgcg ataaattaaa tatcttctga ctgggcaatg ttacaggaat       240
     gaaacataca ccattttgtt cagaacattc tcttctataa ttaagtccaa aaacaattgc       300
     ttgaaaataa tactagtaag agaaaatggc taccaaactt ttatatcaca attgaataaa       360
     atacagtttt caacacttaa aatttcaatg aaggaataaa atgccacagc taattttctt       420
     aacactttta gatacaagac acaccataac attgacagag taccaagccc aaaataaatc       480
     tccttcattt ttaaaataaa tttcagggga ttttggagct taatatcttt ggtggggcta       540
     agtacaaaaa tctgattttt tggcatatat tacatctatg tgttagtaaa ctacagtaaa       600
     aatttcattg ttggtatttg atggtgaaca gagttataat tttatttttc tagcttaccg       660
     gaaattagct atcatgcata tttcactcat ttctttttta cacttaatat agtgagccta       720
     ttttttatgg atttaatttt tatataatta acttttgtta aacaaaagaa aaaaaaataa       780
     ataatataac tgaaagttct cataactatt atgggaacaa aaaaggattt gaagtcttac       840
     caggtttagt gctcatcagg gcaggactat tttgttgact gtggaaactt catctcaaca       900
     attaaaagtg tcattgttga agactcttac agtgtagatg tatgcagtga aacaatgtgt       960
     gatgtggtgt gattatctta gttatcaagt tctataaaag tcatttttat tctgcagtat      1020
     attcttaaaa tggatgaaca atgttctatt ggacaatttg tgaatgaagt gtgccataaa      1080
     tcttgttatg gtttgatttc taaagaactt aaacatttga atgagtttga tgatagtgtg      1140
     caagaacttt ttaagctaag agtgagtaat agtgtctctt caatctgtga gtaccatgaa      1200
     aaaaagtaca tacttaagta taatcatctt tttggaaaat actgcttaga cccattgaaa      1260
     atacacaaga aacgaatcat tacagatttg cgagaaataa aacttgaaca cttgtcttta      1320
     ttgaaaatca gtaattgcaa tgagaaatta attcctggaa aatctctttg ccgaaattgt      1380
     tttgtgaaaa tctttgtttc aaatcaaatg ccaaacgtaa taactggcaa tgattgtgag      1440
     gacgatatct acattcctga agatgaaatt gtacaacaga tggattctgc ttgctctatt      1500
     ttaggggtgt ctcctcctcc taaaattaga aaactgagtt cagagaagag gcaaacagcc      1560
     attgaatcta aaattcaaag agttagtgat aaattaagaa aaaatttaca aacatgtttt      1620
     gacaatgtta gtaaaactac tactacagaa caaaaaaaag gtgattcaga cacagagtat      1680
     ttttatttga ttgaaaagct aaaagaaaaa tgttcactat catctaaaga agaaaaagtc      1740
     aaaatattaa gcttgcttcc tgattcgtgg tcaaaagaaa aaaaaaattg ctacagaatt      1800
     tgaggtgtcc gatcgtctga tcagacttac tcgaaattta atgaaagaac aaggtatatt      1860
     acccacatta gggagtaaga aaggtgtagg tattagtaaa gagactgtag agaaagttaa      1920
     acagttcttt gaaagtgatg aaaacagtag gatgtgtgca ggtaaaaaac agtataccag      1980
     agtgtttata gatggaaaca aagtagtgaa acaaaagcgc ttagtactat gcaatttaaa      2040
     tgaactctac atggctttta aaacatctca tcccgaatgt aaaattggta gatccaagtt      2100
     ttgtgaacta cgtcctaaat ggtgcatttt ggctggatca tcaggtacac actctgtgtg      2160
     tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgttgttg tttgtatcac cagaatgtca      2220
     aactgatgat cgccaaactc aatgttaact ataaagagtt acttgatttg atggtgtgtg      2280
     acgattaaca actatgactg tatgatgggc ttatgcaaaa gttgtcctgg aaaagaaccc      2340
     ttacttgaaa tgttaaatga tacagttgaa gatcttccag acagtgtaga atataagcaa      2400
     tgggtcacta cagacakggc tgaaatggtt acagttataa aaaaatgaga agaatatttt      2460
     gaatcacttg ttgacaagtt ggaaacccta aaaagtcatc actatgtttc aaaaattcaa      2520
     ggacagtttt tagagagaag aaagaaagcc tttctgaaac tgaatgccta atcttggctg      2580
     actttgcaga gaattttact tacattgttc aagatgcagt tcaaggacag cattgggcca      2640
     atgaccaggc aactgttcat ccatttgtat tatattttaa gaatgaggat gacaaactta      2700
     tcagtcgctc aatctgtgtc ttaagtgatt atttagagca caacacagca gttgtacatg      2760
     cctttcagtc ccacatcata aattacatta aagaaaactt acctaaagtt gtgaaggtaa      2820
     tttacttttc agatggaagt ggtagccaat ataagaatag gaaaaaattc actaatattt      2880
     gtaaccacaa ggcagatttt caattagagg ctgaatggca cttttttgca tcttgccacg      2940
     gaaaaaatgc ctgtgatgga gtgggtggaa caaccaagtg tgaagttagt aaggccagtt      3000
     tacaaagaat tacaacagat caaattctga atattgaaca aatgtacacc tattgcaagg      3060
     gaaatatcaa aggtatcaca tatttccttg tcaggaaaga ggaaattctt actcacattg      3120
     agaaacttcg aacaagattt gaaaactgtt tgaagatcaa aggcacaaga aatttccaca      3180
     aatttcacac tgttggagaa aacacaataa ggtgttataa aacttctaca accaaaaact      3240
     atgaggatca ttgcacaagt aaaattgttt ccttaacttt agaagttaat gacacagttg      3300
     catgtgttta tgatggacag tggtggatag ctcagataga acaaataagc ttggaacaca      3360
     atgatgttca tgtgcacttt taccatccat caacccgtac atcttttaag aagtcagcaa      3420
     gtgacagagt ttggattcca atttcaaata tattaagaag aatatcagtt cttgaactta      3480
     ccacagctac aggaagatct tattccatct caacaaaact ctcagaagaa ataagtgtgc      3540
     tcctgaatgg tcatttaaat ttgtgatata gaaagtgtac tgcaaacagt tttttttatt      3600
     tatttaaaaa tatgtaatct attgttatta ctgaatatat aaaaatcttt tgcctacttc      3660
     aggcagactt gtgaaagtat ggctataatt gctgtaactt aactgcactg aaaaaaatgt      3720
     aatgcacttg agtttgtttt aatgtaactt tcaaaaaatt ataactctgt tcaccatcaa      3780
     ataccaacaa tgaaattttt actgtagttt actaacacat agatgtaata tatgccaaaa      3840
     aaatcagatt tttgtactta gccccaccaa agatattaag ctccaaaatc ttaaaaaaat      3900
     tcaaaaccct tttaaaattt attttaaaaa tgaaggagat ttattttggg cttggtactc      3960
     tgtcagtgtt atggtgtgtc tcatatctaa aagtgttaag aaaattagct gtgacatttt      4020
     attccttcat tgaaatttta agtgttgaaa actgtatttt attcagttgt gatataaaag      4080
     ttcggtagcc attttctctt actagtatta gtttcaggca attgtttttg gactttaatt      4140
     atagaagaga atgttctgaa caaaatggtg tgtgtttcat tcctgtaaca ttatcctgtc      4200
     agaagatatt taatttatcg caaatgtctg taaagcctca aatatgctcc cacagctcaa      4260
     tagaaatggc cacctctctg aaacggctga agataaaaag aaattaaaac ctgttttgaa      4320
     ctagttattt actatatatt agcatacaaa aaaattatag aaatcaaaaa tggtcaagca      4380
     acccttgttg gttcacttga tatggattga ccc                                   4413
//
ID   Sola2-4_NVi repbase;    DNA;    INV; 4860 BP.
XX
AC   .
XX
DT   20-APR-2009 (Rel. 14.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Sola2 DNA transposons from Nasonia vitripennis.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-4_NVi.
XX
NM   Sola2-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4860
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-93 (2009).
XX
DR   [1] (Consensus)
XX
CC   The consensus is incomplete at both ends.
XX
FH   Key           Location/Qualifiers
FT   CDS           3360..4334
FT                 /product="Sola2-4_NVi_1p"
FT                 /translation="LKLTKMVKLSMFQKDCYYVILKYCIELLKKNVHNFLS
FT                 ALVNSPNYVQNGVFWPVDDFMSELSLSLKKLIPYHFIAKNQSKYIKDQKNN
FT                 LQENEGLLEMDYSENFAYVVQDAAQQFHFNNDQCTINVAVLYYREDNETRH
FT                 CSFIALSECTTHDTAAVYILQEKIISEIKKRFPKMNKIIYVTDGAKQHYKN
FT                 RYQMMNLVNHESDFQIMADWHFHATAHGKGSCDGVGAVLKREATRTSLQAK
FT                 ATEAILNSKQLYDWARQKFQTITFFHYSKKDYEKTSRSLKKRFSAAPSVTK
FT                 ISEGHAFLVSPDKKITVFRYSNAPSPLSIVQY*"
XX
SQ   Sequence 4860 BP; 1798 A; 657 C; 661 G; 1732 T; 12 other;
     ttttcacgca gttgagaggt ttatcctgtg atcgacggga ggaaaattat tgacagagas        60
     tatttttatg tattttgtgc tgctgaacac gaaaccggcc gtctttttta ccgatacctc       120
     aagcgctcgt ccctaacctc aaaaaaccac ccaaaatgtc tgttttacgc ggttaagaaa       180
     tttacgtcta gaggaaaatt attgacgaag gctattttta tgaattttga gccactgaat       240
     ttgaacacga agcttatttc ttttggtttc tattagttaa gtacattcga ttaaaaccaa       300
     atgcctttaa aacctaaata attagatgga cgtaccttta ctttatacct gttaaaaaca       360
     tttttggtcg tgtatactga ttcatggatt caaagaaata aatagatgaa atggactgat       420
     tccttttgga aaatgattga aatacctgtc attttagaaa atttattgat ttaattaact       480
     cgattacgtc aattccatat ggcgttcata atgaccaaat attactaaac ttcataagta       540
     atcagaacaa agcccgcgtt gtaattgaat ttattctgaa aagccttagt tgggatattc       600
     taaaaattac caaaataaaa aagaaattta gctgtttagc tataaaatta tactaaaaat       660
     agtagagaac cgtaaagaag catgctttac aagattttac agatttctac ccttttatat       720
     tttatatttt tttttacgta tttcacattt tgtgcaatca aacatctttt ctaatttttt       780
     atttttctgc agtttataac atttttaaag tttaaaattt ttaaaattta tcaaatttag       840
     aaatgttatt aactgcaaaa caatgtaaaa atataataat aaaaataaat ataaaaaaaa       900
     tgtaaaaagt gtatgattct gtaaaaaact gtaaagcata gtctaaatac aaacaatctt       960
     ttatagtgat taactatttt tattagaatt ttataacaat ttacagtgta caactttata      1020
     acattaaata aacgttttat caaattaata aaatccaaaa agtgtggaca ttcgatcgtt      1080
     tatttatcgt tttttccaat atttcttaaa ctttcattcc agcgtttcaa agtgtggtat      1140
     taaaagtttt taaaatgttt ttagaaccgt ttcatgttag ggctacatta aaacattcac      1200
     taaacatatt tattatttat tttatcatta ttattgccaa taagatatta tgtttgcagt      1260
     atacttaata ctatcaaaat ttggtaatat tttgatactt gctaatgaga atttttattg      1320
     taaaaaatat caaaatattt aattatattt taattttaaa tattatgaca tatagtaaag      1380
     ttagtttact ttacttaatt tttttttcaa gagataaata tcattatcat ttttgttaaa      1440
     aaaacgaata caagttaaaa gataatttca tagcacgtgc acgttcggtc tygcttcgct      1500
     tgcggtaaac atatttttct aatcagaatt tttgaaatat aagttacaaa accttctcat      1560
     cgaaacaact tcatyaacca acaaagattc taaactttaa aaattattct attgttaaag      1620
     tttataaaat ttatcaaatt tagaaataac tgcaaaaaat ataataataa aaaaaaataa      1680
     aaaaaaaatg taaaaagtgt atattctgta aaaaactgta aagcatagtc taaatacaaa      1740
     caatctttta tagtgattaa ctatttttat tagaatttta ttacaattta tagtgtacaa      1800
     ctttataaca ttaartawac gttttatcaa attaataaaa tccaaaaagt gtggacattc      1860
     gatcgttwwt wwatcrtaat atatttgtcc ataatttaat aaatcatcgt tatttccaat      1920
     atttcttaaa ctttcattcc agcgtttcaa agtgtggtat taaaagtttt taaaatgttt      1980
     ttagaaccgt ttcatgttag ggctacatta aaacattcac taaacatatt tattatttat      2040
     tttatcatta ttattgccaa taagatatta tgtttgcagt atacttaata ctatcaaaat      2100
     ttggtaatat tttgatactt gctaatgaga atttttattg taaaaaatat caaaatattt      2160
     aattatattt taattttaaa tattatgaca tatagtaaag ttagtttact tnacttaatt      2220
     ttttttcaag agataaatag cattatcatt tttgttaaaa aaacgaatac aagttaaaag      2280
     ataatttcat agcacctgca cgttcggtct cgcttcgctt gcggtaaaca tatttttcta      2340
     atcagaattt ttataataaa aaatataaaa atatttctaa attatgttac ctattgtagg      2400
     aattgcttaa ctattatatt taaaatatgt ttcgcataaa acgcgtttta tcaaactatg      2460
     ataatatttt gatacttcgt tgctatgtat gtttatttgg aaatataagt tacaaaacct      2520
     tctcatcgaa acaacttcat ctgctgtcca atgcaaccaa caaagattct aaactttaaa      2580
     aattattcta aaattattct aagtttataa ttttttaatg atattaattg agttgtactt      2640
     gctatcactg tgtaaacgtt gcagacgcta ctcttgtctt tgatatattt tctgacggta      2700
     aagttttagt aaaaattgta tcacacgttg ttttacctag aattctttta aaatatttaa      2760
     atcaaagttt agattattat tctcatttat taaattttga tttcaagtat atttaaaata      2820
     atattatttt gtatactgtt gtagtccaga atctttctct atagtttagt tttgtttcaa      2880
     attctacaaa atttattagc tgttactttc cacatggtat ttttaatgac agaaaaatta      2940
     gtttgaagca gacacaatta acttttaagc tgatatagct tttgtatact tgtccatgat      3000
     taattgaagc atctaaaata tttttaatgt ctgagtctac tgcaaagcat tcttttccaa      3060
     cagttcatgt tgacagatgt attaatccat ttaatcttct ttacctccaa atgatccatt      3120
     gatagtttct attttgacaa tagtacctga atgctggaca ttacgcgata ttgaatcaga      3180
     gtttaatgtc tctttaagaa ttgcaaaaaa ggcgagagat ttgaaagatg aattcggtat      3240
     cttagcgatt cctgatccga aaaaagcgaa aagtttacct gaaattacaa ttaaagaggt      3300
     aaacaaattt tatgaatctg atattaacag tcgagttatg ccgaataaga aagatgtagt      3360
     taaaattaac gaaaatggtg aaactcagta tgttccaaaa agattgctac tatgtgatat      3420
     taaagtattg tatcgaactt ttaaagaaga atgtccacaa tttcctatca gctttagtaa      3480
     attcgccgaa ctacgtccaa aatggtgtgt tttggccggt ggatgatttt atgtctgaat      3540
     tgtctttgag tttaaaaaaa cttataccat atcatttcat cgcaaaaaat caatctaaat      3600
     atataaaaga tcagaagaac aatttacaag agaacgaagg gcttctggag atggattatt      3660
     ctgaaaattt tgcttacgtc gttcaggatg ctgctcagca atttcatttt aacaatgatc      3720
     agtgtacaat aaatgttgca gtactatatt acagagaaga taatgaaaca aggcattgta      3780
     gttttatagc actttctgaa tgtactactc atgatacggc cgcagtttat attttacaag      3840
     aaaagattat ttctgaaata aagaaaagat tcccaaaaat gaataagatt atatacgtca      3900
     cagatggtgc aaagcagcac tataaaaata gatatcaaat gatgaacttg gttaatcatg      3960
     agtcagattt ccaaataatg gcggattggc atttccatgc tactgctcat ggaaagggtt      4020
     catgtgacgg agtaggagcc gtgttaaaaa gagaagctac tcgtaccagc ttgcaggcca      4080
     aagctacgga agcgatttta aattcaaaac aactttatga ctgggcgaga caaaagttcc      4140
     aaacaataac attctttcac tattccaaaa aagattacga aaaaacttca agatcactaa      4200
     agaaaagatt ctcggctgca ccgtctgtta caaaaatttc agaaggacat gcgtttttag      4260
     tttctcccga caaaaaaatt actgtgttta gatactctaa tgcaccaagt ccattatcaa      4320
     tagtacaata ttaataattg aatttaaaat atgttcaaca aaataataca aatatacaaa      4380
     aataaaagta ataattaaaa aacttaaaaa aataaaaaaa aaaaagtaat gcgggctttg      4440
     taataaagac agtctcaacc ctgtaaaacg cagagagctt tcataggaat caataaaaaa      4500
     attgcacagt ataaaccata ttatcagtaa tcagttacat tatttaagtg cactgaagta      4560
     aaagtaaaaa aaataaaatt tagcttcgtg atcaaattca gtggaccaaa attcataaaa      4620
     atagccttcg tcaatgattt tcctctagat gtaaatttct taaccgcgta aaaaagacat      4680
     tttggatggt tttttgaggt tagggacgag cgcttgaggt atcggtaaaa aakacggtcg      4740
     gtttcgtgtt cagcagcaca aaatacatga aaatagtcgt tgcttagaat ttttctgagc      4800
     ccctgtgatt tctgacagct tgatcatttc gtaaagtagt aattttttaa ggttatagaa      4860
//
ID   Sola2-5_AAe repbase;    DNA;    INV; 4409 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-5_AAe.
XX
NM   Sola2-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4409
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1303-1303 (2011).
XX
DR   [2] (Consensus)
XX
CC   >97% identical to consensus. TIRs are ~480 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1318..1758,1662..2801,2734..3525)
FT                 /product="Sola2-5_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MDQQDLSRIKISRCCAGINNPKCRRSQLRNLSPTMIE
FT                 HIRAMGYSHQLDETMHICESCRLVIRLHRSPPKKKRRSGGGEVNQNPQPPT
FT                 SGQASNEMLGKINLLCSTLNDNDCLHRTHINILIRHYCIFQKQSRPVHLCH
FT                 PSHQRMNYNPYQYINSTLLYISEAVPSCSSLPSVPSADELLGPYNVEKFNS
FT                 IIETLNLSPISSRNMRSLDYRIKKSVEITKAVRHDILGMDAMDVDKVEAFE
FT                 EIINQLKEKFNSPGIDRNDQLKILSVLPKSWSINKIVEEFEAPIYMVRQVK
FT                 QLVNEQGILCTTRARSGHGISETDKQVVIDFFDSDDISRPMPGANDFVSEY
FT                 RNGSKEQVQKRLLMMSLKEAYMIFEERCQNVEIGFTLFTMLRPKHCRLLDS
FT                 TGIHNVCVCTYHENVKLMLNSLGIVSQAEICEKLLCDVLVRTTDCFFRECE
FT                 KCNSKENITGELISLLEESDKEDVVFQQWLTTDRCNLETIIKPVEEFVTYF
FT                 VEKVDKLITHDFICKEQSSFLRNKKKLLKTRLMILFAKNSLLFYETKKNSL
FT                 KQGEILVISDFSENYSFIIQNAAQGYHWNNSQATIHPFEIYHKKDNKLENV
FT                 SFIIISEVLTHDTVAVQLFISKLINFVKQKINFSKVIFMSDGAAAHYKNKK
FT                 KIASLCNFKKIYGLEAEWHFFATSHGKGPCDAIGGTLKRMAKRASLAKDYG
FT                 NTIATPRELFDWAVKQTDTCITKLNFCYISNEQYVKMSEELMELFDKVKTV
FT                 PGTQKYHCFMPISDTQIAAKRYTNSEDEPKIFNLFSKAQK"
XX
SQ   Sequence 4409 BP; 1574 A; 710 C; 756 G; 1368 T; 1 other;
     gacggatttc acgccaactc gacaaaggga ttggcagcac cccttcagaa ttcaatgaaa        60
     ctttctgggt gtgaagacta tgtgaaacta agatacttta catactttgt ttttttcaaa       120
     atcgatctag actaacattt ggaaagggtc aaagtttttt ttttactttt tttataaacc       180
     cgtataactc gaaaacggta agacctacaa aaaagtgttg tatgggggac tgtcgtgaaa       240
     tttcctgacg ttttagagaa aaatattgaa aaaataaaaa cacattttct acactgaaaa       300
     aaaaatattc aaaactttaa agtcgattta aaaaaaacgg ccatttcaga ttttgatcat       360
     ccttaagcaa aaagtttcgt aattaaattt actaaaagtc gtccatacat tgcaaattgg       420
     gcatatttta gggaaaaaag tttttctaac atcgaatttt ttaagtccca aagttttttt       480
     tttacttttt ttataaaccc gtataactcg aaaacggtaa gacctacaaa aaagtgttgt       540
     atggggggct gtcgtgaaat ttcctgacgt tttagaaaaa aatgttgaaa aaataaaaac       600
     acattttcta cactgaaaaa aaatatgatt caaaacttaa gagtcgattt aaaaaaaatg       660
     gccatttcag attttgatca tccttaagca aaaagtttcg taattaaatt tactaaaagt       720
     cgtccataca ttgcaaattg ggcatatcta agggaaaaaa gtttttctaa caacgaattt       780
     ttcaagtcca aaactgattt tttttttcaa agattttgtt ctaaaccgtc aaatatgatc       840
     gtgttttcaa gtgataaatg agtttgaatc agaaataaat tgtatttttt attgagaata       900
     gttaaaaaac ggaattatgc agtgattatg ttttttaaat gaaggcaatc tatggatttc       960
     gcctctgcct atgagaaaat caactccgtc taacaatccg acggattttt atggttcgaa      1020
     agattgcaaa cattgaaaag gaacaacctg atccataccc cattaaattt tcttctagaa      1080
     aatactacta aacgtacctg cgttacaagc cagatgaata agaaataatg tttgtattgt      1140
     tatctaccta aaatgtccgt taacgacctg agttactcaa caatcaccgc gtgagtgtat      1200
     agaaagatag gtatttaact tataattgtc gttctaccta tgcatataac tatttaagct      1260
     tgatgtcaat aaaactcttt tcattttatc taagtcattt gtgaaaagaa gttaaagatg      1320
     gatcaacaag atttatcgcg cattaaaatt tcgagatgtt gcgccggtat aaacaatcct      1380
     aagtgcaggc gtagccagtt gcgaaacttg tcaccaacaa tgatcgaaca catacgtgct      1440
     atgggatata gtcatcagct tgatgaaact atgcatattt gtgagtcatg tcgcttagtg      1500
     atcaggctcc acagaagtcc gcctaagaaa aaacgacgtt cgggtggagg cgaagtgaat      1560
     caaaatccac aaccaccaac aagcggtcag gcctccaatg aaatgctagg taagataaat      1620
     ttactttgca gcacattaaa cgacaatgat tgtttacata gaacccatat caatatatta      1680
     attcgacatt attgtatatt tcagaagcag tcccgtcctg ttcatctttg ccatccgtcc      1740
     catcagcgga tgaattacta ggcccctaca acgtggaaaa attcaacagt attattgaaa      1800
     ctttgaattt atccccaatc tcgtcgagaa acatgaggag cttggactat cgaattaaaa      1860
     agtcagtgga gatcaccaaa gctgtacgtc atgacatact aggcatggat gcaatggacg      1920
     tcgacaaggt ggaggcattc gaggaaatca tcaatcagtt gaaagaaaaa ttcaactcac      1980
     ctggtattga cagaaatgac cagttgaaaa tattatcggt tcttcctaag tcgtggtcga      2040
     tcaacaaaat tgtcgaggag ttcgaggcac caatttacat ggtaagacaa gtgaaacaac      2100
     ttgtgaatga acagggcatt ctatgtacca caagggctcg aagtgggcat ggaattagtg      2160
     aaacagataa acaggttgtt attgatttct ttgatagtga tgatattagt aggcctatgc      2220
     caggagccaa tgacttcgtt tctgagtacc gaaatggtag taaagaacaa gttcaaaagc      2280
     gtctattgat gatgtctctt aaagaggcgt acatgatttt tgaagaaaga tgccaaaatg      2340
     tagaaattgg ttttactttg tttactatgt tgaggcctaa acattgtagg cttctcgata      2400
     gcacaggaat tcacaatgta tgtgtgtgca cataccacga aaatgttaaa ttaatgctta      2460
     acagtttagg aattgtctct caggcagaaa tttgtgaaaa actgttatgc gatgttttag      2520
     taagaacgac tgattgtttt tttcgagaat gtgaaaagtg taattccaaa gaaaatatta      2580
     caggagaact aatctcgctt ttagaggaaa gcgacaaaga agatgtagtt tttcagcaat      2640
     ggctcaccac cgatcgctgt aatttagaaa ctataataaa gcctgttgaa gaatttgtta      2700
     cgtatttcgt ggagaaagtt gataagctaa taactcatga ttttatttgc aaagaacagt      2760
     cttcttttct acgaaacaaa aaaaaactcc ttaaaacaag gtgaaatact ggtaattagc      2820
     gacttttctg aaaattatag ttttatcata caaaacgctg ctcaaggata tcactggaat      2880
     aattcccaag caacgataca cccattcgag atttaccata aaaaagataa taaattggaa      2940
     aacgttagtt ttattataat atcagaagtg ttgacccatg atacagtagc agttcagcta      3000
     tttatttcaa aattgataaa ttttgttaaa caaaaaataa atttctcaaa agttattttt      3060
     atgtcagatg gagctgcagc tcattataaa aataaaaaaa aaattgccag cttatgtaat      3120
     ttcaagaaaa tatatggatt ggaagcagaa tggcactttt ttgccacatc ccacggcaaa      3180
     ggcccctgtg acgctattgg tggcactctc aagcgaatgg caaaaagagc aagtcttgca      3240
     aaagactatg gaaacacaat cgcaactccg cgagaactat tcgactgggc agtgaaacaa      3300
     actgatacat gtatcaccaa attaaatttc tgttatatat ctaatgaaca gtatgttaaa      3360
     atgtcagagg aattgatgga attgtttgat aaggttaaaa ctgtccctgg tacccaaaaa      3420
     tatcattgtt ttatgcctat tagtgataca caaattgcag ccaaacggta taccaattca      3480
     gaggatgaac caaaaatatt caatttattc agtaaagccc aaaaataatg taaatattca      3540
     tgtgcagata ctacgtttta ggatatatag caataataaa aataatgatg catgataaaa      3600
     aaaaaccacg acttttttta taagcataat attgaccctt tccagacacc tgttaagatt      3660
     ggctttgacc aaataagaaa taaaatatta ttgtgatatc tttccaacca ttaaaaaccc      3720
     atcggattgt tagacggagt tcattttctc ataagcggtt tggtgcgaga tcaattgtat      3780
     ttaattaaaa aaaaactctg tataattccg ttttatttct tttaactact cccaataaaa      3840
     caaatataat ctattttgtg attaaaactc atttatcact tcaaaatatg agcatactag      3900
     actatttaaa gcgaaataaa aaaaaatcaa aaaaaaaaan tttggactta aaaaattcgt      3960
     tgttagaaaa acttttttcc ctaaaatatg cccaatttgc aatgtatgga cgacttttag      4020
     taaatttaat tacgaaactt tttgcttaag gatgatcaaa atctgaaatg gccgtttttt      4080
     ttaaatcgac tttaaagttt tgaatcattg ttttttcggt gtagaaaatg tttttttatt      4140
     ttttcaatat ttttttctaa aacttcagga aatttcacga cagtccccca tacaacactt      4200
     ttttgtaggt cttaccgttt tcgagttata cgggtttata aaaaaagtaa aaaaaaactt      4260
     tgaccctttt caaatgttag tctagatcga ttttgaaaat acaaaatatg caaagtatct      4320
     tagtttcaca tacttttgac atccagaaag tttcattgaa ttctgaaggg gtgctgccaa      4380
     tcgcgtgtcg agttggcgtg aaatccgtc                                        4409
//
ID   Sola2-5_LMi repbase;    DNA;    INV; 3435 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3435
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3305-3305 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           913..2547
FT                 /product="Sola2-5_LMi_1p"
FT                 /translation="MIQQFFEDDENSRMCPGCKDSKRVVINGVKVTKQKRL
FT                 VLSNLNELYVAFKNSHPECKIGRSKFCDLHPKWCILAGSSGTHSVCVCLYH
FT                 QNVKLMIVGAKLSDLNYKELLDLMVCDANSYDCMMSLCNKCPGKETVLELF
FT                 HEYDEEMPDSITFKQWVTTDRAEMITVVKAQEEYLESLIDNLQKLKSHHYV
FT                 SKIQSQFLKNKKAQLDETECIVLADFAENFTFVIQDAIQGYHWVNDQATVH
FT                 PFILYFKNEKDEVCSSSICILSDYLEHNTLAVHVFQKYVINYIKENFPKVE
FT                 KLIYFSDGSGSQYKNKKNFSNLCNHKVDFGLEAEWHFFASCHGKNACDGVG
FT                 GTTKREVSKASLQRPITDQILTVQDMYAFCKDNIKGITYFLIKKEEVVLHM
FT                 KTTLQTRFENCIAIKGTRHFHKFLAITENLVRCYVTSETEIYEDHCVSKIT
FT                 SLSLTLNDIVACVYDGQWWLAEVETISLENNDVFVHFYHPAGPRTSFKKSN
FT                 SDKVWIPMKNVLRKLSVLELTTATGRSYSISQKLSEEISVLNIHHQVQE"
XX
SQ   Sequence 3435 BP; 1211 A; 533 C; 599 G; 1092 T; 0 other;
     gggtcaatcc aaatgaagtg gtacaatgaa aattaagttg gttgcttgac catttttaaa        60
     tattttaatt tttttatatg tgattgccct atatttgaga agttcaaaac agttttttaa       120
     agtaatttat cttgcacctt tactgaatgg cggccatttt tatttgtcgg cgcgcgccga       180
     tttttcagtc tggagacatt agcgaaaatt tgaatatctc tgcactgggt taagttacaa       240
     cattgcaatt gacatgattg tttttagaaa agtgtcctct acaacattgt ctattacaca       300
     aaatacccta aattcaaaaa taaccagtca aaatgacctc caaagtttgg tatccaaatt       360
     ttcaaaaatc cactttttag gcccaaaaat aacaaacaag gagtgactta tgagagtcta       420
     tttttttcct gtagttagat atcatacact actagcctca tatagagcaa gaacacttac       480
     aaatgtttcc ttaatttttt atgaattttt gaaatttgaa aattttcatt ttttgtaaag       540
     tttgaggcta gttatctcag atgggactga atataaaaat atgatttttg cacagtttgt       600
     acacctatat gatagcaaca tgctgtaaaa atttcaacat tgatatctga gtgtgaacaa       660
     agatatgaat ttttgaaaat gaggaaataa ttcacattac tatacaactg atcttatggc       720
     tgttacctat tcatgtgtga tattggtgga atataatcaa ttattattga agcaaggtac       780
     tgaattatat acaaaaagtg gaaacatcac tgaaattaac atttatgtta ttttgacata       840
     cggtatttaa aataaattaa ttgatcaatt aacatcctga aaggagtagg tataagtgaa       900
     gaaacaataa aaatgatcca gcagtttttt gaagatgatg aaaacagtag aatgtgccca       960
     ggttgcaaag atagcaaaag agttgttata aatggagtta aagtaacaaa gcagaaacga      1020
     ctagtgctgt caaatttaaa tgaactttat gtagctttca aaaattctca tcctgaatgc      1080
     aaaattggaa ggtcaaaatt ttgtgacctc caccctaagt ggtgtatttt ggctggatcc      1140
     tcagggacac actccgtatg tgtttgttta tatcatcaaa atgtcaaact gatgattgtg      1200
     ggtgcaaaac tcagtgatct taactacaaa gagttactag atttaatggt ctgtgacgct      1260
     aacagttatg actgcatgat gagtttgtgt aataaatgcc ctggtaagga aactgttctt      1320
     gaattgtttc acgaatatga tgaggaaatg ccagacagta ttaccttcaa acagtgggtc      1380
     acaactgaca gggcagaaat gataacagtg gttaaagctc aggaagagta cttggaatct      1440
     ttaattgata acttacaaaa actcaaaagt caccactatg tttctaaaat ccaaagtcag      1500
     tttttgaaga acaaaaaagc acaacttgat gaaactgaat gcatagtgct agctgatttt      1560
     gcagaaaatt ttacatttgt gattcaggat gcaatacaag ggtaccactg ggtcaatgac      1620
     caggcaacag tgcatccatt tattctctac tttaaaaatg agaaagatga agtttgcagt      1680
     tcttcaattt gcattctaag tgactacttg gagcacaaca ctttggctgt acatgtgttt      1740
     caaaagtatg taataaatta cataaaagaa aactttccca aggttgagaa gctgatatac      1800
     ttttcagatg gaagtggtag tcagtataag aacaaaaaga atttttcaaa tctgtgcaac      1860
     cacaaagtgg actttgggtt ggaggctgaa tggcactttt ttgcatcttg ccatggtaaa      1920
     aatgcatgtg atggagtagg aggtacaaca aaacgtgaag taagtaaagc cagcctacaa      1980
     agaccaatca cagaccaaat tctcacagta caagacatgt atgccttttg caaggataat      2040
     attaaaggca ttacctattt tctgatcaag aaagaagaag tggttctgca tatgaaaaca      2100
     acacttcaaa ccagatttga aaactgtata gcaataaaag gaacaaggca tttccacaaa      2160
     ttccttgcca ttacagaaaa cttagttcga tgctatgtaa catcagaaac ggaaatttat      2220
     gaggatcatt gtgtcagtaa aattacatct ctctctttaa cgttgaatga catagtagca      2280
     tgtgtgtatg atggacagtg gtggcttgcc gaggttgaaa caataagttt ggaaaacaat      2340
     gacgtttttg tgcattttta ccaccctgct ggcccaagaa catcattcaa gaaatctaat      2400
     agtgacaaag tttggatacc aatgaaaaat gttttaagga aactttcagt gcttgaactt      2460
     accacagcaa ctgggaggtc ttattctata tcacagaagc tgtcagaaga aataagtgtt      2520
     cttaacattc accaccaggt tcaggaatag tcgcatctcg aaggatgtta attgagaata      2580
     tttattttaa ataccgtatg tcaaaataac ataaatgtta atttcagtga tgtttccact      2640
     ttttgtatat aattcagtac cttgcttcaa taataattga ttatattcca ccaatatcac      2700
     acatgaatag gtaacagcca taagatcagt tgtatagtaa tgtgaattat ttcctcattt      2760
     tcaaaaattc atatctttgt tcacactcag atatcaatgt tgaaattttt acagcacgtt      2820
     gctatcatat aggtgtacaa actgtgcaaa aatcatattt ttatattcag tcccatctga      2880
     gataactagc ctcaaacttt acaaaaaatg aaaattttca aatttcaaaa attcataaaa      2940
     aattaaggaa acatttgtaa gtgttcttgc tctatatgag gctagtagtg tatgatatct      3000
     aactacagga aaaaatagac tctcataagt cactccttgt ttgttatttt tgggcctaaa      3060
     aagtggattt ttgaaaattt ggataccaaa ctttggaggt cattttgact ggttattttt      3120
     gaatttaggg tattttgtgt aatagacaat gttgtagagg acacttttct aaaaacaatc      3180
     atgtcaattg caatgttgta acttaaccca gtgcagagat attcaaattt tctctaatgt      3240
     ctccagactg aaaaatcgtc gcgcgccgac aaataaaaat ggccgccatt cagtaaaggt      3300
     gcaagataaa ttactttaaa aaactgtttt gaacttctca aatatagggc aatcacatat      3360
     aaaaaaatta aaatatttaa aaatggtcaa gcaaccaact taatttttat tgtaccactt      3420
     catttggatt gaccc                                                       3435
//
ID   Sola2-6_AAe repbase;    DNA;    INV; 4052 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   A Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-6_AAe.
XX
NM   Sola2-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4052
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1304-1304 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. TIRs are ~600 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1197..2696,2683..3435)
FT                 /product="Sola2-6_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MKYKMNTINKGCVNVFSKKCSKSYRNLTESNIAKLVE
FT                 LGFADENQLNKQFKICDSCRLQLAKRTALSSSDDLSSSEEEDVCMEEETIE
FT                 ASASATSIQSTDSNMNIPSQESLEATSATSIESTNSNLNVSSKETLEATSA
FT                 TSIETTDSNVPEYIQKVNIDIFNESISSILVAPIDKTKISSTKYVTKKYHE
FT                 IVNSIRQNIFALNKEAKLDENRTGEFYEIIEQLKEKFTSEGTTRAEQFQLL
FT                 TVLPKSWTAETIKNTFDTTLYTATEAKQLLNKSGVHSTIGPRATTGLDENI
FT                 KHAVMQFYEDDETSRAMPGQRDCVTIRKDGKRQAVQKRLMTTTLREAYNRF
FT                 QELNTEIQIGFSSFAKLRPKNCKLLTSSGTHNVCVCTIHENVNLITHSLKK
FT                 YGLSNELKVFTDSLTCENATVDCFLRRCENCIDTTSLEKKLLEEMDEKFVD
FT                 EIIFEQWVTTDRCDIETFTKQKEEFVSYFIQKLEKLIPHDLIKKEQSTFLK
FT                 NKKKKIKKNNLQEREFVAICDFSENYTFVLQDEVQSHHWNAQQATIHPFAI
FT                 YFKENGMLNHLSFVVISEDLRHDSISVNLFISKMINFIRQEKHLNLNKIYF
FT                 MSDGAASQYKNRKNFSSLCQFKKNYDIDVEWHFFATSHGKGPCDALGGTIK
FT                 RMATRASLAKEREHPIKNAKELFDWAQKRKEEQLTQIFFSYATTTEYEHIK
FT                 EQLNEQYSKAITIQGTQKYHSFIPVSVDKIEVRQFSNCNDSKKIVNIMKKL
FT                 "
XX
SQ   Sequence 4052 BP; 1532 A; 621 C; 686 G; 1213 T; 0 other;
     gagcggttcc acagaaaatg acgacttttt ttcccaaatt tcatttttat attttttgat        60
     ttggatgaaa ttttgcacat gctttcttta tgcccaaaaa tgcctttttg catcatcggt       120
     tcgccatttt gactctagcc ttacttttga gaagggccta agaaaaaaat ccttaataat       180
     tttcaaaaaa ttataactta gaaacggttt gtccgatcag tttggtgtct tccgcaaagt       240
     tttaggttat tgttgggact atctggaaaa aaatacactg taaaaaaatg ttgtaatttt       300
     ttatatttcg aaaataaagc ttaaaaatca attttctcaa aaatcgtatt tttgaatttt       360
     ttttattttt ttatatgtta aagtagacaa aaaatgaagt cttttgcaca gtgggtcaag       420
     atggagaaat catggacaaa aaagttatga tttttttaaa aaaaggtgaa tttttgaaaa       480
     tggtcataat aaacttttta aatgtttttc aactcgattt tatgaaagta cgcaaaattt       540
     acaacaaaaa aggtatacgg gaaaatcagg ctaactttta ccgttttaaa gatacagcga       600
     ttttaataca aaattatgat ataattttca attttcggtc attttcgaat gtttttcgag       660
     gctcataagc ctagaaattt gttcattgtc tgaaagagca gataattttt gactaaaatg       720
     tttgaaaaaa tattgatttg gtaatttttc atggtatgag gcgaaataaa aaatgtgccc       780
     tgtaaaaatg atttatttat ttttttaacg aaacacaact tcaacattca acattgtgat       840
     attttgatat gtaattatca agaaaatatg gaacaaaatg ttaaaagtta aaaaataaca       900
     aaataacgaa tataaagcaa tcaatacgtg aaatgcattt atatcgattt aagataatga       960
     aatatttcca ttcgaaaaca aaagctttat gagtagagga gtaacgtgcc cagttgtctc      1020
     acacaaatat acctgatgtt ttcttaaagt acagcacgtt ggtatatttt tgtggtcgga      1080
     cagaaacgta cctaatagtt gattcaagta cccatgttgg tataaaaaag agctgatgca      1140
     gcaaagacaa acaagcaagt gataatcaag tgaaaagtaa aagatagctt agaacaatga      1200
     agtataaaat gaacaccatc aacaaaggtt gtgtaaatgt gttttcaaaa aagtgttcaa      1260
     aaagttaccg aaatctcacg gaaagtaata ttgccaaatt agttgaacta ggatttgcag      1320
     atgaaaatca gcttaataaa caatttaaaa tttgcgattc gtgtcgttta caattggcca      1380
     aaagaacagc attatcaagc agtgatgact tatcaagtag tgaagaggaa gatgtttgca      1440
     tggaagagga aacaatagaa gcatcagcat cagcaacttc aatacagtca acggattcca      1500
     atatgaatat tcctagtcag gagtcattgg aagcaacgtc agcaacttca atagaatcaa      1560
     cgaactccaa cttgaatgtt tctagtaagg agacattaga agcaacgtca gcaacatcga      1620
     ttgagacaac ggattccaac gtccctgaat acatccaaaa agtgaatatc gatattttca      1680
     atgagtcaat atcaagtata ctcgtagcgc cgatcgataa gacaaaaatt agttctacta      1740
     aatatgtcac gaaaaaatat cacgagatag tcaacagcat tagacaaaac atctttgcgc      1800
     taaataagga agctaaattg gatgaaaata gaaccggcga attctatgaa ataattgagc      1860
     agctcaaaga aaagtttaca agtgaaggga cgacaagggc agagcaattt caactcttaa      1920
     ctgtattgcc taaatcatgg acagccgaga caattaagaa cacatttgat acaactttat      1980
     acacggcaac ggaagcaaaa caattactga acaaaagcgg cgtgcattct actattggtc      2040
     cgagggcaac cactggactg gatgaaaata tcaagcacgc ggttatgcaa ttttacgagg      2100
     atgatgaaac cagtcgagca atgcctggtc agcgtgattg tgtaacaatt aggaaggacg      2160
     gaaaacgcca agctgttcag aaaaggctca tgactaccac attgcgagag gcctacaacc      2220
     gattccagga attgaacact gaaatacaaa tcggattttc atcctttgct aaacttcggc      2280
     ctaaaaactg taaactctta actagctcgg gaactcacaa cgtttgtgta tgtaccattc      2340
     acgaaaatgt gaatctcata acccacagct taaaaaaata cggtttatct aatgaattaa      2400
     aagtgtttac agatagtttg acatgtgaaa atgcaacagt agattgtttt ttacgccgat      2460
     gtgaaaattg cattgacaca acttccttag aaaaaaagtt attagaagaa atggatgaaa      2520
     aatttgttga tgaaattatt tttgaacaat gggtcacaac tgatagatgc gatatagaga      2580
     cgttcacaaa acagaaggag gagtttgttt cctatttcat tcaaaagtta gaaaaattga      2640
     taccacatga tttaattaaa aaagagcagt ctacattttt gaaaaataaa aaaaaataac      2700
     ttgcaggaaa gagaatttgt agctatatgt gatttttcag aaaattacac ttttgtactt      2760
     caggatgaag ttcaaagtca tcactggaat gcgcagcaag caactattca tccatttgcg      2820
     atttatttta aggaaaatgg catgctcaat catttaagct ttgtagtaat ttccgaagat      2880
     ttgcggcatg attctatatc cgttaactta tttatctcaa aaatgattaa ttttatacgc      2940
     caagaaaagc acttaaattt gaacaaaatt tatttcatgt ccgatggagc tgcatcacaa      3000
     tataaaaata gaaagaactt ttctagtctt tgccaattta agaaaaacta tgatatagat      3060
     gttgaatggc attttttcgc aacatcgcat ggcaaagggc cctgcgatgc attaggggga      3120
     acaataaaac gcatggctac aagggctagt ctagctaaag aacgtgaaca tcccatcaaa      3180
     aatgccaagg aattatttga ttgggctcaa aagcgaaagg aggagcaact aacacaaatt      3240
     ttcttttctt atgcaactac aacagagtat gaacatatca aggagcagct taatgaacaa      3300
     tattcgaaag caataactat tcagggaaca caaaaatacc attcatttat tccagtttcc      3360
     gtagataaaa tagaagttag gcaattttca aactgtaatg atagtaaaaa aattgtaaac      3420
     attatgaaaa agttgtgaat tttcagtaaa tttaatttta aaatcgctgt atctcggaaa      3480
     cggtagcaat tagcaaaatt ttctcatata ccttttttgt tgcaaatttt gcgtactttc      3540
     ataaaatcgg gtcgaaaagc attcaaaaag tttatttaga ccatattgaa aaatcaacct      3600
     tttttaaaaa atcataactt ttttgtccat gatttctcca tcttgaccca ctgtgcaaaa      3660
     gactccattt tttgtctact ttaaaatata aaaaaaataa aaaaatcaaa aaacaatttg      3720
     tgagaaaatg gatttttaag ctttattttc gaaataaaaa aaaattacaa catttttttt      3780
     acagtgtata tttttttcag atagttccaa caataaccta aaactttgcg gaagacacca      3840
     aaccgatcag acaaatagtt tctgagtttt aattttttga aaattgttaa ggcttttttt      3900
     cttaggccct tctcaaaagt aacgctaggg taaaaatggc gaaccgatga tgcaaatagg      3960
     catttttggg tataaagaaa gcatatgcca aatttcagcc aaatcaaaaa atacaaaagt      4020
     aaaccgacat tcgaattcaa atggaaccgc tc                                    4052
//
ID   Sola2-6_LMi repbase;    DNA;    INV; 3393 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3393
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3306-3306 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(791..2125,2129..2230,2234..2335,2326..2529)
FT                 /product="Sola2-6_LMi_1p"
FT                 /translation="MVEHFLAPNDAKVCDSCRKELSTLKNNKETNQASATL
FT                 NLELEILNTSDSENDPDFNSKSDVVETLNASLHELGESPLDSRKIKSKRYA
FT                 SQKIFKINSAMKRKLFTSIQDSSSDEAHETLDDSILKNLKYHFSHCTSRDK
FT                 KIMILTCLPDSWSVRKIMREFNAPNYMVRQSKKILKDKGILEGPHQKPGKS
FT                 LPIEVVRAVRDFYESDEISRVLTGKKDCVSVKSGTGEKVTLPKRLVLCNLM
FT                 EAFLYFKDKNPMLKIGFSKFAELRPKNCVLAGSSGTHSVCVCTSHQNVKLM
FT                 LENAKISSMTNGELHTYKHCIAKALCNPASIKCYFGECSTCPGTDYIKNLL
FT                 EEKFEEKGIEKITFRQWISVDRCNLETIEKSTSDFIELFVQLLSALIRHDF
FT                 IARQQSSFLNNIKENLEISEYLVMCDFSENYTFVIQDEAQSTSNSTSICDL
FT                 KEEETKRVSFVIISEVLEHNTIAVYCFQRKLMNSNRNLETVSKIYSFLMGA
FT                 PHSTKKKLHQLSYDHLYPPVLNRPYKHSKLHPIPSTENERKFSQTTTKLKL
FT                 LHDSGSFKFSRVVGLTVVYDNNWWLAYVLENLTF"
XX
SQ   Sequence 3393 BP; 1200 A; 542 C; 565 G; 1086 T; 0 other;
     gagtcattcc atgtcaactc aacacagttt acattaaaat tttacttcac catctcagat        60
     ttcaatgaaa tttggtatac tggtaccccc cttatagaga aagaaaaata ccaaatttca       120
     acttgatatc tcaaatggtt tcaaaattac accttgttaa agttttcaaa aaagctcata       180
     atcggcctgt ttctgaaact ttaaactgct atagcgactc tcagaatcaa gctagaaaga       240
     tgagagaggt gtcattttgc agtatttttc aagccctttc caaaaatatg taaccctaca       300
     agggtcataa tattttttta ccaatttcaa aattaaaaat ttaattttaa atttttcaaa       360
     atgcgccact tttaaaattt tgaaaaaatt ctcaaatagt ccttgtagag tggttaattg       420
     atagtataag tttcataatg ggatcataat gggttcttac agaaaaatgc attcgaaaac       480
     aagcttacat tagaattttc actataataa cgactaattg agctaatgtc acattataca       540
     ttatgacata tgcgtagtta acaatgtagt attacaatgt gctactacaa tactgcaagt       600
     gctggaccgt aattgatggt gtgacaagta ttgtgtatgt ttgatatgtg agtagagtgg       660
     aagtgtttgt gtgttgaata agtgtttgtg cagtaatgga aaacacaagg cataaaacat       720
     ttcagtgttc aatccttttc aaaaaaatag aattagaaat aaaaaaacac ttagaacagt       780
     aacacaatgg atggttgaac attttctagc acctaatgat gctaaagtat gtgactcttg       840
     cagaaaagag ttatcaactc taaagaacaa caaagaaaca aatcaagcca gtgctacact       900
     aaacctagag cttgaaattt taaatacttc tgattctgaa aatgaccctg atttcaactc       960
     taagtcggat gtcgttgaga cacttaatgc ttctcttcat gaactgggcg aatcacccct      1020
     tgattcaaga aaaataaaat caaagagata tgcttcacaa aaaattttca aaattaattc      1080
     agccatgaag cgtaaacttt ttacttctat tcaagactcc tcctctgatg aagctcatga      1140
     aacccttgat gattcaattt tgaaaaatct aaaataccac ttctcacact gcacttcaag      1200
     ggacaaaaag attatgatat taacttgttt gcctgattca tggagtgtaa gaaaaataat      1260
     gcgagaattt aatgctccaa attacatggt caggcagtct aagaaaatac ttaaagataa      1320
     aggtatatta gagggccctc accaaaaacc tggcaagagc ctgccaatag aagtagtaag      1380
     agcagtgcgt gatttctatg agagtgatga aatcagcagg gttttaactg gtaaaaaaga      1440
     ctgtgtttct gttaagtctg ggactggaga aaaagtcaca ctgccaaaga gactagtttt      1500
     atgcaattta atggaggcat tcttatattt taaagacaaa aatcctatgt taaaaatagg      1560
     gttttctaag ttcgcagaac taagaccgaa aaactgtgtc ctggcaggtt ctagtggtac      1620
     gcactcagta tgtgtctgca caagccatca aaatgtaaaa cttatgttag aaaatgcaaa      1680
     aattagctca atgacaaatg gtgaactgca tacgtataaa cactgtattg ctaaagcact      1740
     gtgcaaccct gcctccatta agtgttattt tggggaatgt tcaacctgtc caggtacaga      1800
     ttacatcaaa aatttgttgg aagaaaaatt cgaagaaaaa ggcattgaaa aaataacttt      1860
     tcggcaatgg atatcggtcg atagatgcaa cctggagaca atagaaaaat caacttcaga      1920
     ttttattgaa ttgttcgtcc aacttttgtc tgcattaatc agacatgact ttattgccag      1980
     acagcaaagc tcctttttga acaacataaa agaaaatctt gaaatctcag agtatcttgt      2040
     catgtgtgac ttctctgaga actacacttt tgtgattcaa gatgaagcac aaagcacaag      2100
     caacagtaca tccatttgtg atctataaaa ggaggaagaa accaaacgtg taagctttgt      2160
     tatcatttct gaggttctag agcacaatac tatagcagtg tattgttttc aaaggaaact      2220
     gatgaattca tgaaacagaa atttggagac agtatcaaaa atatattctt ttctgatggg      2280
     tgcgccgcac agtacaaaaa aaaaacttca ccagctttcc tatgaccacc tgtattaaat      2340
     agaccataca agcactcaaa acttcatcct atcccttcta cagaaaatga aagaaagttt      2400
     tctcagacca cgacaaaatt gaagttgtta catgattcag gatcgtttaa gtttagcaga      2460
     gtcgtgggat tgactgtcgt ctatgacaat aactggtggt tggcctatgt acttgaaaat      2520
     ttaaccttct gaaaatattt ttaaaaaagg ctgcaagtta attacgtaag tttttttctg      2580
     ttatgtacat agactttatt aaaatattaa cccagttaca acacattaaa tgtttttacc      2640
     aaacttcatg tgtatattaa tcttgaattt caccaactaa aatttttcag ttttaaaact      2700
     acctagtttt agtgcatagg cttctttttc tattagtgat atgtctaaag ctttctaatg      2760
     attacattta tcttttaaaa agaggttgta aaaattaaat atcattgatc aaatttatag      2820
     acatatttct attgttaagt ctctcatata aatttttcat aaatctaaga gactattaga      2880
     ccttccggga ccaatgagtc attattatag tgaaaatgct aatgtaagca tattttcaaa      2940
     tgcatttttc tataagaacc cattatgaaa tttataccat cagttaagca ctatacaagg      3000
     actatttgag aattttttca aaattttaaa agtggcgcat tttgagaaat ttaaaaatac      3060
     attttttatt ttgaaattag taaaaaaatt attatgcccc ttgtagtgtt atatattttt      3120
     ggaaagggct tgaaaaatgc tgcaaaatga cacctctctt atctttctag cttgattctg      3180
     agagtcgcta tagcagttta aagtttcaga cacaggtcga tttttagcgt tttttggaaa      3240
     ctttaacaag gcgtaatttt gaaaccattt gagatattga gttgatattt ggtattttta      3300
     tttctctata tggggggtac cagtatacca aatttcattg aaatcaaaga tggtgaggta      3360
     aaatgactgt gttgagttca catggaatga ctc                                   3393
//
ID   Sola2-7_LMi repbase;    DNA;    INV; 4760 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4760
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3307-3307 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(917..1534,1491..2426,2411..3502)
FT                 /product="Sola2-7_LMi_1p"
FT                 /translation="MESVKSCSVGKLLKTPCHLMTYTTVKTLEKFSELSED
FT                 QQDLILLRSNINIAEDQERTICGHHRYYYLKVFESHERTXCDPFKIHRQSV
FT                 KKSLRSVSLAMSKSLRTKRIYVKPGQKVCTTCRKICEQKTEISDIDESDAD
FT                 DPEVTFHESGLKRQSIEDANKTLGDLGCSPLKLHSIPNHSKASYGKRKLEK
FT                 VKRVLENSVPGIRLQCSVCWKIVYQALDCSVEISDSREGKIDEVVKKAKDF
FT                 DDMILLMKEKVASVRQSAKIQVLTLAPPSWSKERIMSEFNVSEYVVRQARK
FT                 LKREKGILSVPKPKRGKIISDEIMKFVTDFYQNDEYTRMLPGAKDKVSIQK
FT                 NVYMQKRLILCNLRELYSCFKWENPNINIGFSKFCSLRPKWCILAGAAGTH
FT                 SVCVCSIHQNVKLLLDAGHIEETYKELIKFLVCDNQCDSENYDCMLNHCDS
FT                 CPSEEKLLEFLKEKLAYKHDDEDNVEYSQWINIDHRTELVKQSATVDEYID
FT                 LLVTKLQALKPHSYISKVRQDPGQARSLKNLKENLTPEKAILLMDFAENYT
FT                 FVIQNEIQSYHWSRSSCTIHPVCVYVINEENELVIVNHCFISDDMEHDVGF
FT                 VHAVQTEMVKWLSVHYPRVKKLHYFTDGCAAQYKNRKSFKNLCEHKNDFSV
FT                 DAEHSFFATSHGKSVCDGLGGTVKRVLRKASLQLNDDVQITTASGVYNFCS
FT                 ANIEKCFFHFLDKNNIDFLRKNLEKRFLTTRTIPGTRNFHHYKPLSCDSLE
FT                 IRRVTFSEKPSLIFSFNENVLQWTHSRPQQNTFVAAVYNDRWYFAFVKNIC
FT                 NEEQDAELLFLHPPGPAVSFFWPEKEDACFVPWENILCTVGVPESSSLGRV
FT                 YYFNENDVKLTQSNLSQWIKKRDAIKAST"
XX
SQ   Sequence 4760 BP; 1658 A; 761 C; 845 G; 1495 T; 1 other;
     gggtcattcc atgtcaaatc acccaataat tctaggtttt gtaacccccc atctcagatt        60
     tccacaaaac tttgcacatt tgcttatact tacaacataa gaacatatcc agaatgtttt       120
     tgttctcaga ctaaaacttt attttatatt gaattttcaa tgtagtgatg ttctgataat       180
     ctggctctgc gagaatgtcc acacaaagag gtaccatact acagaaatac tcaggtcttt       240
     atgaagcttt ttgcagaggt taagagaggc atgtagttaa tagtaatgta attatttaag       300
     cagtaaagtt tcaaagaaaa ttacaaaaaa tattaattaa tgtcactttc cagtttctgg       360
     aaaaattaca agggtgttga aaaaagctta tatcacattt ctccaacctg ctgggaacct       420
     agttttggtc ttaaacaatt cccaggatag caggctttct aataaaataa aaatattaat       480
     gggtatccta tgaatggaca cacaaataaa ttagaaatca aaaaaacttt ttatcgtgat       540
     gaaaaaagca actttgcaag taagttcatc caagctgaaa cccactgcct cagatacagg       600
     ggtatcatgt tatatttaaa tatgttattc tagacagaca aattaagtat gataaattta       660
     tttcatttta ttaaatcagt aaattatatc gtatttatct gtgcagctaa caatctgatt       720
     cctacagtag tttgcttgga acctgtacag tcattaaaac aatgcaacaa tcactggcaa       780
     gcaacaatca gtccatttgg actcagttgg cctttgtctt cctgtgagac aggtcatatt       840
     tgtttctggt gctgccattt tccagtctat ttctaatgaa gtatgttttt aatgaagtag       900
     tgctcagtca attacaatgg aaagtgtaaa gtcatgtagt gttggaaaat tacttaaaac       960
     accatgtcat ttgatgacct acaccacagt aaaaactctt gaaaaatttt cagagctgag      1020
     tgaagaccaa caagatttaa ttttgctacg gtccaatata aacattgcag aagaccaaga      1080
     aagaactata tgtggacatc acagatatta ttacttaaaa gtatttgaaa gccatgaaag      1140
     aacttsttgt gatcctttca aaatacacag acagtcagtt aaaaaatcct tgaggtcagt      1200
     aagcttagct atgtcaaaat cactaagaac taagagaatc tatgtgaaac caggccaaaa      1260
     agtgtgtaca acttgtcgta agatttgtga acaaaaaaca gaaatcagtg acatagatga      1320
     aagtgatgca gatgacccgg aggtgacatt tcatgaatca ggactaaaaa gacaaagtat      1380
     tgaggatgca aataaaactt taggtgattt gggatgctct cccttaaaac ttcattccat      1440
     tccaaatcac agcaaggcct catatggcaa acggaaacta gaaaaagtga agcgtgtgtt      1500
     ggaaaatagt gtaccaggca ttagattgca gtgttgaaat ttctgacagt agggagggta      1560
     aaatagatga agttgttaag aaagccaaag attttgatga catgatactg ttaatgaaag      1620
     aaaaagtggc tagtgtaagg caatctgcaa aaattcaagt tttaacttta gctcctccct      1680
     cttggtcaaa agaaagaata atgtcagaat tcaatgttag tgagtatgta gttcgacagg      1740
     caaggaaact gaaaagagaa aagggtattt tatcagttcc taaaccaaaa agaggtaaaa      1800
     ttatctctga tgaaattatg aagtttgtca cagattttta ccaaaatgat gaatatactc      1860
     gaatgttacc aggagcaaaa gacaaagtta gcattcagaa gaatgtctat atgcaaaaaa      1920
     gacttatcct ctgcaaccta agggaactat attcttgttt taaatgggag aatccaaaca      1980
     ttaacattgg tttttctaaa ttttgttcac taagaccaaa gtggtgtatt ttagctggtg      2040
     ctgcaggcac tcattctgtg tgtgtctgta gtatccacca aaatgtaaaa ctgcttttgg      2100
     atgcggggca cattgaagaa acatataaag aacttataaa atttcttgta tgtgataacc      2160
     aatgtgactc tgaaaactat gactgcatgc ttaatcactg tgatagttgt cccagtgagg      2220
     aaaaattgtt agaatttttg aaagaaaaat tagcttacaa acatgatgac gaagacaatg      2280
     ttgagtacag ccagtggatt aacatagacc atcggaccga attggtaaag cagtctgcaa      2340
     ctgttgatga atacatcgac ttgttggtaa caaaattaca ggcacttaaa ccacattcat      2400
     atatatctaa ggtcaggcaa gatccctgaa aaatttgaaa gaaaatctaa cccctgagaa      2460
     agcaattctg ttaatggact ttgctgaaaa ctacacattt gtaattcaga atgaaataca      2520
     gagttaccac tggtcaagaa gcagctgtac aatccatcct gtttgtgttt atgtgataaa      2580
     tgaggaaaat gaattggtaa tagtaaacca ctgctttata agtgatgata tggagcatga      2640
     tgtgggattt gtacatgctg ttcagacaga aatggttaag tggctgagtg tgcactaccc      2700
     acgagtcaag aaactgcatt atttcactga tggatgtgct gcgcaatata aaaatagaaa      2760
     aagctttaaa aacttgtgtg aacataaaaa tgatttttct gttgatgctg aacattcctt      2820
     ttttgctact agccacggta aatctgtgtg tgatggattg ggaggaaccg taaaacgtgt      2880
     gttgagaaaa gctagtcttc aactaaatga tgatgtacag ataacaactg catctggtgt      2940
     ttacaacttc tgcagtgcta atattgaaaa atgtttcttc cacttcttag ataaaaacaa      3000
     catagatttc ctccgcaaga accttgagaa gagatttttg acaacccgca caatacctgg      3060
     taccaggaat tttcaccatt acaaaccact ttcctgtgat tcattagaaa ttagaagagt      3120
     aactttttct gaaaagcctt ccttgatatt ctcattcaat gaaaatgtct tgcaatggac      3180
     acactcccgt cctcaacaaa acacttttgt agctgctgta tacaatgaca gatggtattt      3240
     tgccttcgtc aagaatatat gcaatgaaga acaagatgct gaactacttt ttctccaccc      3300
     acctggacct gcagtgtcat tcttttggcc tgagaaggaa gacgcttgtt ttgtgccttg      3360
     ggaaaacatt ttatgtactg ttggtgtacc tgaatcaagc tcattaggaa gagtgtatta      3420
     ctttaatgaa aatgatgtga agttaacaca atcaaatttg tcacagtgga ttaaaaaaag      3480
     agacgctatt aaagcttcca cttgagaact cagaatctcc tctgctgaac aggtacattt      3540
     taaataaaaa tcatttatct atcttgtgta attgttatgt aaataggctt attttatatc      3600
     cctaaataaa gttaacagta ttaatgaaaa tatttccatt aaaatataac tgttggctct      3660
     gtacttttat tgttttaaca aatgagacat gtcatcaagc ttatcggtca acgtacgttt      3720
     ttttttaatg accttcagaa caaagatatg aaatagttta ttatataaat gattgccact      3780
     gtcggtcaaa acccatgcta tttttttgtt tgtaatcata tcatatattt gagtctcaat      3840
     aaaaaaggcc taggagtaac aactctgaaa gtattttgca tatttaagaa agcagtgtat      3900
     gggccataac aattggtgtt gatttcctat attcccagaa gttgagcaga gttataaaaa      3960
     tttgaaaata agccaagtct cttttttctc cctaaagtaa tgtaatctaa atggcaagct      4020
     tcagccatga tgtttatgta tgttttttgg aaattttaag atttttctat ctcaaaaact      4080
     atgaaatatg tggaagaaac tttacactgt ttgttatcat gtcaaaagta acaagtaaaa      4140
     aaaattcatg aaaatctggt gcagtgggtt tcagcttgga tgaacttact tgcaaagttg      4200
     cttttttcat cacaataaaa agtttttttg atttctaatt tatttgtgtg tccattcata      4260
     ggatacccat taatattttt attttattag aaagcctact atcctgggaa ttgtttaaga      4320
     ccaaaactag gttcccagca ggttggagaa atgtgatata agcttttttc aacacccttg      4380
     taatttttcc agaaactgga aagtgacatt aattaatatt ttttgtaatt ttctttgaaa      4440
     ctttactgct taaataatta cattactatt aactacatgc ctctcttaac ctctgcaaaa      4500
     aaattcaaat aaaaagcttc ataaagacct gagttatgag tatttctgta gtatggtacc      4560
     actttgtgtg gacattctcg cagagccaga ttatcagaac atcactacat tgaaaattca      4620
     atataaaata aagttttagt ctgagaacaa aaacattctg gatatgttct tatgttgtaa      4680
     gtataagcaa atatacaaag tatcatgaaa atatgagact gtgggtgaca tgacccgggt      4740
     gatttgacat ggaatgaccc                                                  4760
//
ID   Sola2-8_LMi repbase;    DNA;    INV; 4617 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4617
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3308-3308 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(746..1024,1072..1809,1685..1993,1920..2231,
FT                 2174..3286)
FT                 /product="Sola2-8_LMi_1p"
FT                 /translation="MLILYIVDNKGLSLLHPTIKLCTELSLFEHCLEVQIR
FT                 QYYYASMHMKNSPVISRPAVFQSGNETLPLACLYCKSISVHLALFKLNLCL
FT                 CLVTFVFYVKLIVCVCVCVCVCVCVFLTMEIRASSSKHVSNFKCSVGSLLN
FT                 LSCENTSLTKSKDIYLISEKLSKEEVEILVWRTNTQYSETDDICSHHLCYF
FT                 LKYFEKNQKSCCDPFKKHSVPLTKKKDLRIITLEKAKYVKERKNIILVPGK
FT                 LLCSTCRKLLNEATPSLDHEEISLLDSDEANESELTNAKRVVEREKLNETL
FT                 LGLDVTPLKLKSLPTQSKKKYAKKKFKMAKDQVKKKVVICFESRRTQHHLN
FT                 LSHYLPNRRKNMLKRSLKWQKTRLKKRLSFVLKVEEPNDSSESDSTTQGNE
FT                 LKTKSEDLDHLVDAIKEKLKTNLTTREKNTDINNHSKVMVSQKSSGKIPHG
FT                 KKIQILTITPKSWSRRKAAEKFNVSEYLVRKARTLANEKGILALTEPKHGR
FT                 SLPEETIDAVQLFYEDDEFSYMLPGAKDKVSMKKKKKKILTSRKEFFYATY
FT                 EKKKKKNTYKQKRILLCNLEELFIVFKEKHPNCKIGFSKFCSFRPKWCVLA
FT                 GSPGTHNVCVCLYHQNVELLVNALNLHDKESIHTMMDKLVCDRQNRDCMLK
FT                 RCDMCPETSESLKLHLTEILEDYDEDIKFSQWVSRDGRMTLQTMLLPCKEF
FT                 IDFTIKKIESLIPHSYITKAQNSYLKQRKEKLEFNEVLVLMDFAENYNFIL
FT                 QNEVQSYHWVHSSCSVHPVVIFSKKEDSTIKETSMCFISDDLKHDVPFVYS
FT                 VQEKTIGFIKQNFPGVDQIEYFTDGCSAQYKNFKSMINLCFHAKDFKLNAS
FT                 WSFHATSHGKTTCDGIGGTVKRTVTKNLQSSRQSEQIINAEQMYNFCKSLF
FT                 SKIFFFLFKGRRN"
XX
SQ   Sequence 4617 BP; 1650 A; 697 C; 805 G; 1465 T; 0 other;
     gggtcattcc acgccaaatc atccagccaa aagtagatat aacacccaag gtttttgaat        60
     ttattccaaa atttatatgt gaaatgtatg cataatgata agaaaaaatc caaagtttca       120
     tccaattcta taaagtagtt tccaagttat gaccatttaa agttttacgc taactgtact       180
     tccaagagcg atgtagatgt aactaaagtg tgcatgcttt tagagaatct gaagtaaaat       240
     cattggtttt gaagctagag ccttgaaatt ttcactgttt tgttctaaat taaacactga       300
     aactgataga tacacaaaat tctgatttat aatcttcaat catattgaaa agctgcactc       360
     aaactcaaat tattgttaat ttcaaaattg tgacgtagat gtagaaaaat atgaatagct       420
     aaaatctctc tccaaataac ccaatacaac catatatttt tgaaaacagc ataaaattac       480
     ctttcaaatg gtgcaaaaaa attggtgggg tttggatttg taacagtttt atcttatatt       540
     gaagtcaaaa caagtctaat ctgttcaaaa tgtatggaac gggtgtttta tgattcaaaa       600
     ttggtatagt ggaggttata tagaaggttt taaaactatt atttggaaga tcaactactt       660
     aaaaaagtaa ttttagtaca tttttgttct gtgtttttaa attgggacaa agatttatca       720
     ttcgtaagca aaaacaatta aatgaatgct gatactttac attgtagaca acaaaggact       780
     ctccttattg cacccaacaa ttaaattgtg tacagaattg tcattgtttg agcattgtct       840
     tgaagttcag ataaggcagt actactatgc aagtatgcac atgaaaaatt caccagtcat       900
     cagtcggcct gctgtcttcc agtctggaaa tgaaactctc cctctagcct gcctgtactg       960
     caagtcaatc agtgtgcatt tggctctgtt taagttaaac ctgtgtttgt gcttggtgac      1020
     attttaaata attgttatat aaactagtta taattttatt tttaaaagtg agtgttttat      1080
     gtgaaactaa ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtttcttacc      1140
     atggagataa gagcaagttc aagtaaacat gtatctaatt ttaagtgttc agtaggttca      1200
     ttattaaatt tgtcatgtga aaatacttca ctgacaaaaa gcaaagacat ttatttaatt      1260
     tcagaaaagt tgtctaaaga agaagtagaa attttagttt ggcgtactaa tacgcagtac      1320
     agtgaaacag atgatatttg ttcccatcat ttgtgttatt ttttaaagta ttttgaaaag      1380
     aaccaaaaat cctgttgtga tccgtttaag aaacattctg tacctttaac aaagaagaaa      1440
     gatttgagga taattactct ggaaaaagca aaatatgtta aggaaagaaa gaacattatt      1500
     ttagtgccag gaaagctgtt gtgcagtaca tgtagaaaac tgttgaatga agcaacacct      1560
     agtttagacc atgaagaaat ttctctactg gatagtgatg aagcaaatga gagtgaatta      1620
     accaatgcaa aaagagtagt agaaagagaa aagttgaatg aaactctttt agggttggat      1680
     gtgacaccac ttaaacttaa gtcattacct acccaatcga agaaaaaata tgctaaaaag      1740
     aagtttaaaa tggcaaaaga ccaggttaaa aaaaaggttg tcatttgttt tgaaagtaga      1800
     agaacccaat gattcaagtg aatctgacag tacaacacaa ggtaacgaat tgaagaccaa      1860
     atctgaggat cttgatcatt tagtggatgc tataaaggaa aaacttaaga caaacttaac      1920
     cacacgggaa aaaaatacag atattaacaa tcactccaaa gtcatggtct cgcagaaaag      1980
     cagcggaaaa atttaatgta tcggaatatt tagtgcgaaa agccagaacg cttgcaaatg      2040
     agaaaggtat tttggctttg acagaaccca aacatggcag atcccttccc gaagaaacta      2100
     tagacgctgt ccaactgttt tacgaagatg atgaattttc ttacatgttg ccaggtgcta      2160
     aagacaaagt tagtatgaaa aaaaaaaaaa aaaaaatact tacaagcaga aaagaattct      2220
     tttatgcaac ttagaggaac tgttcattgt gtttaaagaa aaacacccaa attgtaaaat      2280
     cggattttcc aaattttgct ccttcagacc aaaatggtgc gtgctagctg gttcacctgg      2340
     aactcacaac gtgtgtgttt gcttgtacca ccaaaatgtt gagcttttag taaatgctct      2400
     gaacctgcat gataaggaat caatacacac tatgatggac aaattggttt gtgacagaca      2460
     gaacagggac tgcatgttaa aacgttgtga tatgtgccct gaaacgagtg agtcactgaa      2520
     gctacatcta acagaaatac tagaagacta cgatgaagac attaaatttt cacagtgggt      2580
     ttcaagagat ggcagaatga ctttacaaac aatgctacta ccttgcaagg agtttattga      2640
     ttttaccatt aaaaaaattg aatctctaat acctcattct tacatcacaa aagctcaaaa      2700
     ctcttacttg aaacagagga aagaaaaatt ggaatttaat gaagttttag ttcttatgga      2760
     ttttgctgaa aactataact tcattctgca aaatgaagtg caatcctacc actgggtcca      2820
     ctcgagctgc tcagttcatc cagtagtgat tttttctaag aaagaggatt ccaccataaa      2880
     agaaacatca atgtgtttca tttcagatga tctaaagcat gatgtaccat ttgtttattc      2940
     agtacaagaa aaaaccatag gtttcataaa acaaaatttt cctggtgttg accaaattga      3000
     gtattttaca gatggttgca gtgctcagta caaaaatttc aaaagcatga taaatttatg      3060
     ttttcatgct aaagatttta aattaaatgc aagctggtca tttcatgcta caagtcatgg      3120
     aaaaacaaca tgtgatggga tcgggggcac agtcaagaga actgttacca aaaacttgca      3180
     gagcagtagg caaagtgagc agataataaa tgctgaacaa atgtacaatt tttgcaaaag      3240
     tttattttca aaaatatttt tttttctttt taaaggaaga agaaattgaa attaaaagaa      3300
     caatgcttga aactagattt caaatggtca aaaataccag gtacagaagt ttccattatt      3360
     ttaagccagc ttcttgtgaa gaaatcacag ccaaacgagt gagtttggac tctgaaattg      3420
     tgttgaaaca aaatattttt atgactacca accattaaac ctaacattca ttctttcatt      3480
     gcatgtgttt atgagcaaaa ctggtggata ggaatggttc agggtttcaa tgaagaagaa      3540
     ggggactatg acattatttt tatgcaccct catggaccag cagaaacttt ctttggcctc      3600
     aaaaagaaga cagatgtcat gttccaccag cccatcttct atgtgtaata gctcctccag      3660
     aggttgcatc tcagtttggc agatcttata agattgatgc taactcctga aaggaaatca      3720
     taaaaacatg ggaaaatttc cttgttctct tgtaaaacta aacttcttgg acatgtaaat      3780
     ataattactg tacatactgc ttcttataaa cttagcataa tactccaaat gaataattat      3840
     taaagtttaa agtcatcaag aactctttgt acgaaggatt tgtttgaaaa tgaacaatcg      3900
     ccaactcatg tattcaaatg taagtaaacc aattttgtaa aattcttaat ctatgtatct      3960
     tttattttaa aataactaat acataaaact tgggttaatc tggcattttc acagttgtat      4020
     tatttcaaat aagtaattat ttcatcaaac atgtattttg caaagtaaat tacaaaattt      4080
     gactttaatt tcttataaaa ttgttgcaac tcagaacccc accacttttt ttgcaccatt      4140
     tgaaaggtaa ttttatgctg ttttcaaaaa tatatggttg tattgggtta tttggagaga      4200
     gattttagct attcatattt ttctacatct atgtcacaat tttgaaatta acaataattt      4260
     gagtttgagt gcagcttttc aatatgattg aagattataa atcagaattt tgtgtatcta      4320
     tcagtttcag tgtttaattt agaacaaaac agtgaaaatt tcaaggctct agctccaaaa      4380
     ctaacgattt tacttcgaat tctgtaaaag catgcacatt tcagttacgt cttcatcgct      4440
     ctcagaggta caattagcgt aaaactttaa acggtcataa ctcagaaact actaactaga      4500
     tttggatgaa acttggaata ttttcttgtc tttgtgcata aaattcaaat atagattttc      4560
     ataaatatct gtgagaggtg ggtgtagtgc cctggatgac ttggtatgga atgaccc         4617
//
ID   Sola2-9_LMi repbase;    DNA;    INV; 3893 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Sola2-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3893
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3309-3309 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1244..1501,1342..1602,1647..1838,1766..2152,
FT                 2220..2720,2674..3048,3052..3327)
FT                 /product="Sola2-9_LMi_1p"
FT                 /translation="MDKFEDEEYTPDPSMTLQKLDESCELLEISPFKVTKR
FT                 THDRRSEYIRSKSRRLALKFXQTASEVLHXPVKNVSEETAVLNVQTVMFGH
FT                 QENTRQAFRIHSIQVSSLSIKIPANSFRSASXSSEKCVRRNGSAECTDCNV
FT                 LMQKLKEKFSRSSVREKLQILTLAPASWSQEKCFKKMVFCQKGAIKLETID
FT                 KDVETRVQSFYCEDDVSRISSNKKDCCLSLQKMAKECIRQKDSFCIIKRLL
FT                 SVPSENGKRVYKTKRLILHNLKDVYLAFKQKYPEDKIGFTKFCELRPKECV
FT                 TVNSCGMHNVCVCTYHQNVKLLMRAAHVKEPYTELLQKLVCSLENEECMLH
FT                 RCSLCLMNMICAIFNAAGLLTRLLMNLLSISSKIQNLAHHHYISKSQSHYL
FT                 KSSKETLRHYCIIIVDFAENYTCLLQDAAQGFHWQNIQVTLHPFVVYYKTD
FT                 DCIKSMSLCCISDCLQHDTNTFYVFQKTALTYILEQLPHIQHVMYFSDGSS
FT                 AQYKNFKNFLNLCHHKQDHGVTAEWNFFCYQSWQKCMLQNGIFFATSHGKN
FT                 ACDGVGGTIKRLATRASYSVHMRVKFYVQKIFLYLQKPTFQDKTFYVTTEE
FT                 ITKFTNILEKRYETGSTIPGFFKPLNESRLLIKRVSSSNKFIQVSLGLKNT
FT                 ASNAIKEEKIVAAIYDNQWWVGKVLETSDELRDAKVKFMSPSGPSSSYSWP
FT                 LHADICWVPYENILITLPAPSASTSTGRLYNFGSDIIVSIENLFRRSNTS"
XX
SQ   Sequence 3893 BP; 1332 A; 665 C; 679 G; 1214 T; 3 other;
     gggtcattcc acgtgaaacc acccaacggc cgtttkatgt aagaatgtac ataatgagtt        60
     atggctagag taatttttct agaatttttt gaccaaaatt gtgattagga gaccattttg       120
     aaatctgcat accttccacc aactagtgtc gatagatgag atgtcttgta actttgtaac       180
     cactataact tttttattta tgattcaatt ttattcaatt tggtgtcatt agaaagaaaa       240
     gaatagagtt atatatgaaa ttatgaaagt gcctgcatct atgcaacaaa tgtgtgaaaa       300
     atggtaattc cagtaatttt ctcacttttt tgggccaatt tcaggaatct ttttcatcaa       360
     tatcacaagt ttcaccatct taatttttgt tgcaaataat tcctactgac atacttctca       420
     acataaaaat tatcgaaggt gtcatccttc attgttggat ctcattgttt tcaataaagc       480
     tgtaataatg gtttccttca aatacctgtt caacaatgca tgaaacaaca atgaaaaatt       540
     cagtctagca gcaacactca aaagcaacac aaagtttgtg tatgtgtgtg tactttctat       600
     tctgagaaca tttattcctg attatgtttt ttacataagc acctattccg tctggtaagt       660
     gccgtatatg aaagtaatac aaagttgttc cataatgtac atattagaga tcacataata       720
     aagtagtcat taactatttc tcgttctccc ccttacagat tcttcatagt gcatacatga       780
     ctgattagag aacaagaaaa agtttcaaac cattcagttc ttttctccaa catacacact       840
     tgattaaaaa tcataataga aaacaaatgt tctttaggtt ttgtgtcagc agttgtgtgt       900
     cagaagaaaa gtagtaacag tagtagtgaa gagcttgatt taatagacat gtcaagtctg       960
     aatccagctg ataatgatta ttgaggctaa gaagaacctg tgaaaatatc gagtgtgtgt      1020
     gttcttctca caaaaggttc tatctgcaaa catttgaaga cagacgaaga atttgctgta      1080
     accctttcaa gaagcatggt aaaaagactg ctaagaatct ttgaaagctg tttctttaac      1140
     cacggcacag aaatataaaa gccttggact tatcccaggt accaagcttt gtatagcatg      1200
     ccgtaaggac attttatctc cgatcagtga taaccttcca gagatggata aatttgaaga      1260
     tgaagaatat acaccagatc catccatgac tcttcaaaaa cttgatgaaa gttgtgaatt      1320
     acttgaaatt tcaccattta aggtcaccaa gagaacacac gacaggcgtt cagaatacat      1380
     tcgatccaag tctcgtcgct tagcattaaa attccwgcaa acagcttcag aagtgcttca      1440
     twttccagtg aaaaatgtgt ccgaagaaac ggcagtgctg aatgtacaga ctgtaatgtt      1500
     ttaatgcaaa aacttaaaga gaaattcagc agaagttccg ttagagaaaa actgcaaata      1560
     cttaccttag ccccagcttc atggagccaa gaaaaatgtt tttaacacta ccgaatacat      1620
     ggttaagaaa tcgagggtac tgctaaaaga agatggtatt ttgtcaaaag ggagctataa      1680
     agttggaaac aatagataag gatgtggaaa cacgtgtcca gagtttttac tgtgaagatg      1740
     atgtaagtcg aatttcttct aataaaaaag actgctgtct gtcccttcag aaaatggcaa      1800
     aagagtgtat aagacaaaaa gactcatttt gcataatttg aaagatgtat acttagcttt      1860
     caaacaaaaa tacccagaag ataaaattgg ttttacaaag ttttgtgaac ttcgcccaaa      1920
     agaatgtgtt actgtaaaca gttgtggaat gcataatgta tgtgtatgca catatcatca      1980
     aaatgtaaaa ctgttgatgc gtgctgcaca tgtgaaagaa ccgtacactg aacttctaca      2040
     gaaacttgtt tgcagtctgg aaaatgagga gtgcatgttg catcgctgtt ctctctgcct      2100
     gatgaatatg atctgcgcaa tttttaatgc agctggactc cttacaagat tgtgaaaatg      2160
     ttgttttcaa acaatggatg caaactgacg acctacactg gagacactaa tgaagatgac      2220
     tgatgaattt gttgagtatc tcgtccaaaa ttcaaaactt ggcacatcat cattatatct      2280
     caaaatctca gagccactac ttaaaatcaa gcaaagaaac cctacgacac tactgcatca      2340
     tcatagtgga ttttgcagag aactatacat gtcttcttca ggatgctgca caaggatttc      2400
     actggcagaa cattcaagtc acccttcatc cttttgttgt gtattataaa acagatgatt      2460
     gcattaagtc aatgtcattg tgttgtataa gtgactgttt gcagcatgat acaaacacat      2520
     tctacgtttt ccagaaaact gctctcactt atatattgga acaattacca cacatccagc      2580
     atgttatgta tttcagtgat ggcagttccg cacaatataa aaattttaag aactttttaa      2640
     atttgtgcca tcacaagcaa gaccatggag taactgcaga atggaatttt ttttgctacc      2700
     agtcatggca aaaatgcatg tgatggagtt ggtggtacca ttaaacgctt agcaacaaga      2760
     gcaagttaca gcgtccatat gagagtcaaa ttttatgtcc aaaagatctt tttatatttg      2820
     caaaaaccca cgttccagga taaaacattt tatgttacaa cagaggaaat aacaaaattc      2880
     acaaacatcc tagaaaaacg atatgagact ggttctacca ttcctggttt tttcaaacca      2940
     ctgaatgaaa gcaggttgct gataaagcgt gtttcatcat caaataaatt cattcaagtt      3000
     tctcttggac ttaaaaacac tgcctctaac gcaattaaag aagaaaaata aattgtcgct      3060
     gctatctatg acaaccagtg gtgggttggc aaagttctgg agacaagtga tgaactgaga      3120
     gatgcaaaag tcaaattcat gagtcctagt ggcccttcct caagttattc atggccactt      3180
     catgctgaca tttgttgggt accttacgaa aacattttga ttactttgcc tgctcctagt      3240
     gcaagcacaa gtactggtcg tttatataat tttggatcag acataatagt gtccattgaa      3300
     aatttgttta gaaggagtaa cacttcttag aattttatgt gaactgaaca ttgtttgttg      3360
     accactaggt atgagccaca aaatgaaatg tgtggattat tatttacgtt aattccattt      3420
     taaatgacta aacagaacaa accccttctg attttatgat aataggcatt ttgtgaaaca      3480
     aaaattaaaa tggtgaaact tgtgattttg aaaaaatgaa atttgtaaac aaaaatattg      3540
     ataaacgact ttaattttag gcatgtatat atatgcatag ttgcagattt tttatagttt      3600
     agtgatgtag taggttcttt tatctttcta atgacaccaa cttgaataaa attgattcat      3660
     aaataaagaa gttacagtag ttacaaactt tcaaccccct ttcgtactga cggcagactg      3720
     agaaaatgct agacatttca aagtggcctc ttgactatag ttttgataaa aaaaaaaaat      3780
     cttaaaatat tttatcactt tctaattatg tactatctta taccaaattt tcacaaatat      3840
     ctgtgacatg atggcaacga gatttcctta ttttgggtga tatgaaatga gcc             3893
//
ID   Sola2-N1B_BTa repbase;    DNA;    INV; 4639 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   03-JUL-2018 (Rel. 23.07, Last updated, Version 2)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1B_BTa.
XX
NM   Sola2-N1B_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4639
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 672-672 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 4639 BP; 1334 A; 992 C; 919 G; 1394 T; 0 other;
     gggtcattcc acgtcaacgc aaccaaggtc ggaacccgac cccctccgat ttggctgaaa        60
     attggtatac gaggtcttta catcattcta agaaactaat ttgaagggtt ttcccatccg       120
     acgccccgtt cgcgagatat cgacccccaa agatggggtg aattttagtg atattcaaaa       180
     acgcccgttt tagcgattct cattttctcg acttccctct ctttgactct ccatagcgag       240
     actctgtatc aatccatcat actttgaaag agtgtttcta gaccagtttt tcatgtagat       300
     tctgaatatg ccattgaaat ttagctaaaa attattctaa tggccgtaat ttagggtttt       360
     ttaaaattta cgattttttc gccattcaat gttcaaactg aattatctca aaaacagtct       420
     ctccgatttt cgattttttt tttatacttc aagcttagga tatatacttt cggttgatat       480
     acttttttca attgccatcg gacggttaag ggcctaaaaa aattcaaata ggccaaaaaa       540
     ggctaaaaat tggtaaaaaa ggacgatttt tcacatgtta atccaaatat ttcgataatg       600
     aactcttcaa ttatcgatat tttttcccac tttaccctct aacatgtata aaatcagact       660
     atcaacgctt tccatacatg caccgatcga ttaacggcct gatggaaacc ggaaaccgac       720
     cgaaaatcct cgaaattgac gcaaaaagac gatttttcac accgtaaccg atacattcca       780
     tggattgtaa ctgcaatttc caattttctc gatctatttc aaccttaagg tgtatacttt       840
     cgagtaataa acccttacta taacgtgcat cgatggggca cggatccaaa cggaagtgaa       900
     aaccggccgg aaatgctaaa aaatgacggg aaaaggcgat ttattgcata gtcaggggag       960
     catgtgttcg aaaattacgt cccgtttgca cgtttgtgat gcaagtttac tctcttcatt      1020
     ttggtcccta gaatgagaaa atctttggtg gactctccaa ttttgatgcc aaggccccaa      1080
     aaacaagatg gcggccaaaa tggacgctga aattaaaatt ttggtaaaac ggcacaaaac      1140
     gtcaagagag gtgtcgattc tcatgttttt tggatcgtag attccagaaa aattgtcatc      1200
     cagacccctc gacccacgga aatgcccaaa atccaagatg gcggccgatt ttggctcttt      1260
     agcggctaaa acgtcaaatg cggagcaaag agaggagtaa acacactaga tatctgtttt      1320
     cgaggtcaca gattccaaaa aaatagaaaa aaatatttca tgccaaatgg tgctgatttg      1380
     gatcatgcaa aggccgaact cggcagtcat tttgattagt gtgttcagga acactctaat      1440
     cgaaataatt ttccgggtca gtttctataa ttagcattat tggttttttt taaggtatac      1500
     ccctgcagaa tatgggtaaa tttgttctca aatacacaat aaaactattc cgatgagttt      1560
     tgacccacta aatctgaaaa ttgcgtttat tcttccggat tacccctcaa ttttccggaa      1620
     aactaaccag gctaatgacc attatttcgg gcggaatcgg cttttccaga gaatggagat      1680
     gttgcacgaa agagggattt gcgatttgac cattgattct tatgtaaaaa ttcgcgagaa      1740
     acacgatggt gccactggtt ttctctgaaa tcatctccca agctcaaaaa aagctctcaa      1800
     agtgagtcca aaatggaggg gatatcccat cctaccctga gagtccatct ctacatcaaa      1860
     acaaaccctc catgcaaaga tagggagcaa atacattagc agggttgccg tgttttcagt      1920
     tttggagtcc ccaaataaag tggtagccct gtcaatgtat ttgctcccta gagtcccttt      1980
     atactgagaa tcgagacaat gtgaatccat ttctcattgt ttcccgtatt ttaggcctcc      2040
     acagtgtcac aaccgggaat aaagattaca gtttcaccga ttgcaaagat tataatctgg      2100
     aatggaccgg ggatggaagg ttcggcaagg aacaaacgga atgagggaag gaacgaagaa      2160
     aggaattcga gaatgggccg atcaaagatt acgaaaaacg ttcaatttct gtaatcttta      2220
     ttcccgtttg taactccatg aggggtgttg tcttgactct cagtataaag ggactctatt      2280
     gctccctatc tttgcatgga gagtttgttt tgatgtagag gtggactctc agggtagggc      2340
     gggatatccc ctccattttg acctaaactt gagagctttt tttgagcttg ggagttgctt      2400
     tcagaggaaa ctagtggcac catcgtgttt ttcgcgaact tttacgtaag aatcgacggt      2460
     caaatcgcaa aaccctcaca aatgcaacat ctccattgta gggtgatgga aaaaaacgga      2520
     ggtttccgga ttcagcccct caaaatacgt aggaatcacc ttatctcatc ggggagacat      2580
     ggttgtaatt tttttgcttg ttaaacagtg ccattgccgg ggagtacctg atactcccaa      2640
     tttcgataat aattaatata ttacacatac atacaaagcc gcttttatag cgatctctgg      2700
     cgctctgcga caccttaccg cctaagctcc cgatcctcct aaggcctttc agggagttca      2760
     cataccctca tttttctaaa accctgtgtc gccacccttt cactgggcat cccctttgtc      2820
     tcctcccagg aggaacccaa tcaagcatct tttacggcag tccttcgttc gtcattctat      2880
     tgacatcgcc aaaccagtca agctgtctga tcatgctgtc gaatacgatg tcattttcga      2940
     ctcccataat ctgacgcact ctttcattgc ggacccgatc gcttctaaaa attcctacag      3000
     cgacctcctc cagaaatcca tttccgttgc tcttagcatc ccctgtgtcc gttccttcag      3060
     ctgccaaact tcactgtcat atgtaagaat actttggtct tcgcaattga aaattttcct      3120
     cttgttctct ttggaaatct acggatcccg gaggattcca ttgaatatag ctgtagcctt      3180
     ccttgctaag atgtttcttt cctttatccc tttatccgtt cttccatcct gggtcaacag      3240
     aacccccaag gacctatagt gcgcctttga tctgctgccc atcctccaac tcaatgctat      3300
     gttgatcacc aatagtttta ttgcgtgaac atatttacct atattacggc tctgctccgc      3360
     atttgacgtt ttagccgcta aagagccaaa atcggccgcc atcttggatt ttgggcattt      3420
     ccgtgggtcg aggggtctgg atgacaattt ttctggaatc tacgatccaa aaaacatgag      3480
     aatcgacacc tctcttgacg ttttgtgccg ttttaccaaa atttcaattt cagcgtccat      3540
     tttggccgcc atcttgtttt tggggccttg gcatcaaaat tggagagtcc accaaagatt      3600
     ttctcattct agggaccaaa atgaagagag taaacttgca tcacaaacgt gcaaacggga      3660
     cgtaattttc gaacacatgc tcccctgact atgcaataaa tcgccttttc ccgtcatttt      3720
     ttagcatttc cggccggttt tcacttccgt ttggatccgt gccccatcga tgcacgttat      3780
     agtaagggtt tattactcga aagtatacac cttaaggttg aaatagatcg agaaaattgg      3840
     aaattgcagt tacaatccat ggaatgtatc ggttacggtg tgaaaaatcg tctttttgcg      3900
     tcaatttcga ggattttcgg tcggtttccg gtttccatca ggccgttaat cgatcggtgc      3960
     atgtatggaa agcgttgata gtctgatttt atacatgtta gagggtaaag tgggaaaaaa      4020
     tatcgataat tgaagagttc attatcgaaa tatttggatt aacatgtgaa aaatcgtcct      4080
     tttttaccaa tttttagcct tttttggcct atttgaattt ttttaggccc ttaaccgtcc      4140
     gatggcaatt gaaaaaagta tatcaaccga aagtatatat cctaagcttg aagtataaaa      4200
     aaaaaatcga aaatcggaga gactgttttt tagataattc agtttgaaca ttgaatggcg      4260
     aaaaaatcgt aaattttaaa aaactctaaa ttacggccgt ttaaataatt tttagctcaa      4320
     tttcgatggc atattcagaa tctacatgaa aaattggtct agaaacactc tttcaaagta      4380
     tgatggattg atacagagtc tcgctatgga gagtcaaaga gagggaagtc gagaaaatga      4440
     gaatcgctaa aacgggcgtt tttgaatatc actaaaattc accccatctt tgggggtcga      4500
     tatctcgcga acggggcgtc ggatgggaaa acccttcaaa ttagtttctt agaatgatgt      4560
     aaagacctcg tataccaatt ttcagccaaa tcggaggggg tcgggttccg accttggttg      4620
     cgttgacgtg gaatgaccc                                                   4639
//
ID   Sola2-N1B_CQ repbase;    DNA;    INV; 1934 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A Sola2 DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1_CQ; Sola2-N1B_CQ.
XX
NM   Sola2-N1B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1934
RA   Kojima K.K. and Jurka J.;
RT   "Sola DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 627-627 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >94%
CC   identity. 4bp TSDs. ~90bp TIRs. ~80% identical to Sola2-N1_CQ.
XX
SQ   Sequence 1934 BP; 671 A; 302 C; 305 G; 656 T; 0 other;
     gagcaattct ctaccaaaac cggaaatgga ttttatttgt attttttgat ttggctcaaa        60
     ctttgtgggg gccttcccta tgaccaaata tgctattttg tgtcattggt tcacccatac       120
     aagtctccat acaattttgg cagctgtcca tacaaaaatg gtatgtaaat attcaaacag       180
     ctgtaacttt tgagtgaatt ttctgatcaa tttggtgtct tcggcaaagt tgtaggtatt       240
     gttgaggact tttgagaaaa aaataggtac acggaaaaaa aaatttgcag atttttttat       300
     caactttttt ttcactaaaa ctcaatttcc caaaatacgt attttttgat tttcgagatt       360
     ttttgatatg ttttagggga caaaaatccg caacttttga gccatagaga aacatggtca       420
     aaaaatctgc cgccgagtta tgaatttttg aaaaaatagt gatttttgga aaaaatcgaa       480
     gtttcatgca aaaacaagtt tgacattatt ttttaatgca aaattgaatt tgcaatcgaa       540
     aagtacttta cagatttttt gataaagggc tccgtttaca agatatagcc accgaaagtt       600
     tgattttagc gaaatatttg cagtttttca atttttaaaa atagtgacca tgagtgacca       660
     tttctaaaaa tatttttttt ttgaaaagtt cagaaaattt gctataaaat tgtctaagag       720
     acattgaaga ttggacctct ggttgctgag atacagcggc ttaaagaaaa agaaacacga       780
     aaattgaagt tttctaagtc tcacccaaac agcccaccat tttctaatga cgatatctca       840
     gcaactaatg gtccgatttt caatgttaat acatgaaaca ttcgtgaaat tttccgatct       900
     cttcgaaaaa aatattttga aattttttaa atcaagacta acatttgaaa agggccaaat       960
     attgaatatt acgcccattt aaaatgctag tctagattta aaaattttca aaatattttt      1020
     ttcgaaaaga tcggaaaatt tcacgaatgt ttcatgtatt aacattgaaa atcggaccat      1080
     taattgctga gatatcgtca ttagaaaatg gtgggctgtt tgggtgagac ttagaaaact      1140
     tcaattttcg tgtttctttt tctttaagcc gctgtatctc agcaaccaga ggtccaatct      1200
     tcaatgtctc ttagacaatt ttatagcaaa ttttctgaac ttttcaaaaa aaatattttt      1260
     agaaatggtc actcatggtc actattttta aaaattgaaa aactgcaaat atttcgctaa      1320
     aatcaaactt tcggtggcta tatcttgaaa acggagccct taatcaaaaa atctgtaaag      1380
     tacttttcga ttgcaaattc aattttgcat taaaaaataa tgtcaaactt gtttttgcat      1440
     gaaacttcga ttttttccaa aaatcactat tttttcaaaa attcataact cggcggcaga      1500
     ttttttgacc atgtttctct atggctcaaa agttgcggat ttttgtcccc taaaacatat      1560
     caaaaaatct cgaaaatcaa aaaatacgta ttttgggaaa ttgagtttta gtgaaaaaaa      1620
     agttgataaa aaaatctgca aatttttttt tccgtgtacc tatttttttc tcaaaagtcc      1680
     tcaacaatac ctacaacttt gccgaagaca ccaaattgat cagaaaattc actcaaaagt      1740
     tacagctgtt tgaatattta cataccattt ttgtatggac agctgccaaa attgtatgga      1800
     gacttgtatg ggtgaaccaa tgacgcaaaa tagcttattt ggtcataggg aaggccccca      1860
     caaagtttga gtcaaataaa aaaatacaaa aaataaaaat ggtcgaaatc ggccgatttc      1920
     gtagagagtt gctc                                                        1934
//
ID   Sola2-N1_AAe repbase;    DNA;    INV; 1394 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   A non-autonomous Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   m4bp_Ele13; Sola2-N1_AAe.
XX
NM   Sola2-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1394
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1394
RA   Kojima K.K. and Jurka J.;
RT   "Sola2-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as m4bp_Ele13.
CC   [2] Consensus update and characterization as a non-autonomous
CC   Sola2. ~96% identical to consensus. This consensus is ~94%
CC   identical to the original sequence in [1]. 4 bp TSDs. TIRs are
CC   ~920 bp long.
XX
SQ   Sequence 1394 BP; 529 A; 176 C; 190 G; 499 T; 0 other;
     gacgaattcc atgcagaatg agtcgaaaaa aataaaaatc gtgctcgata gtcttcgatt        60
     tggattaaat tttgcacatg cttttggtat ggtagaataa gtgttttcca tagaaaaatt       120
     gatcattttg actcaagtgg aacttttgaa aatggcctat gaatttttgc atgcaactta       180
     tttgaaaaat tctaactccg aaactgttga ttttagagaa aaatgttcta tgaagaagtt       240
     gtagtgaacc gtttggacta taagaaaaaa atatacactg aaaaaatatt ttattaattt       300
     tcataaaaaa ttcaaaaata aaacttaaat tttaaattac acaaaaaccc catttttaat       360
     attttttaaa ttttcaccat ataatcttga tagtaaaaag agttttggga caaagtttca       420
     tgatggagaa atttttaata aaaaagtttt tctaagaaca acttttggac gattttcaaa       480
     attttgatat tttgtcaaaa taaatacgtt ctgatgatac agtaagcaac ttgaaatgat       540
     tctaagccat aatgattata tgaataattt ctctagaagt agccatttgt gaattatatc       600
     gagtttaatg caaaaaatat tatttaaata ttaaaatagg ccattttcat tagttattcg       660
     tgattctcca tcaaggaaaa taagtaaatg taaagaaata tggtctttac tctcgaaaac       720
     gaattattat taatggagaa acgcgaataa ctaatgaaaa tggcctattt taatatttaa       780
     acaatatttt ttgcattaaa ctcgaaataa ttcgaaaatg gctacttcta gagaaattat       840
     tcatataatc attatggctt agaatcattt caagatgctt actgtatcat cagaacgtat       900
     ttattttgac aaaaaatcaa aattttgaaa atcgtccaaa agttgttctt agaaaaactt       960
     ttttattaaa aatttctcca tcatgaaact ttgtcccaaa cctgttttta ctatcaagat      1020
     tatatggtga aaatttaaaa aatattaaaa atggggtttt tgtgtaattt aaaatttaag      1080
     tttaatattt gaattttgta tgaaaataaa tgaaatattt ttccagtgta tatttttttc      1140
     ttatagtcca aacggttcac tacaacttct tcatagaaca tttttctcta aaatcaacag      1200
     tttcggagtt agaatttttc aaataagttg catgcaaaca tttataggcc attttcaaaa      1260
     gttacgcttg agtcaaaatg atcaattttt ctatggaaaa cacttattct accataccaa      1320
     aaacatgtgc aaaatttaat ccaaatcgaa gatggtcgag ttctgtgact gaccgatttg      1380
     acatggaatc cgtc                                                        1394
//
ID   Sola2-N1_BTa repbase;    DNA;    INV; 4326 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   DNA transposon from Bemisia tabaci, consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-4326
RA   Bao W.;
RT   "DNA transposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 671-671 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 4326 BP; 1237 A; 930 C; 849 G; 1303 T; 7 other;
     gggtcattcc acgtcaacgc aaccaaggtc ggaacccgac cccctccgat ttggctgaaa        60
     attggtatac ggggtcttta catcattcta agaaactaat ttgaagggtt ttcccatccg       120
     acgccccgtt cgcgagatat cgacccccaa agatggggtg aattttagtg atattcaaaa       180
     acgcccgttt tagcgattct cattttctcg acttccctct ctttgactct ccatagcgag       240
     actctgtatc aatccatcat actttgaaag agtgtttcta gaccaatttt tcatgtagat       300
     tctgaatatg ccatcaaaat tgagctaaaa attatttaaa cggccgtaat ttagagtttt       360
     ttaaaattta cgattttttc gccattcaat gttcaaactg aattatctaa aaaacagtct       420
     ctccgatttt cgattttttt tttatacttc aagcttagga tatatacttt cggttgatat       480
     acttttttca attgccatcg gacggttaag ggcctaaaaa aattcaaata ggccaaaaaa       540
     ggctaaaaat tggtaaaaaa ggacgatttt tcacatgtta atccaaatat ttcgataatg       600
     aactcttcaa ttatcgatat tttttcccac tttaccctct aacatgtata aaatcagact       660
     atcaacgctt tccatacatg caccgatcga ttaacggcct gatggaaacc ggaaaccgac       720
     cgaaaatcct cgaaattgac gcaaaaagac gatttttcac accgtaaccg atacattcca       780
     tggattgtaa ctgcaatttc caattttctc gatctatttc aaccttaagg tgtatacttt       840
     cgagtaataa acccttacta taacgtgcat cgatggggca cggatccaaa cggaagtgaa       900
     aaccggccgg aaatgctaaa aaatgacggg aaaaggcgat ttattgcata gtcaggggag       960
     catgtgttcg aaaattacgt cccgtttgca cgtttgtgat gcaagtttac tctcttcatt      1020
     ttggtcccta gaatgagaaa atctttggtg gactctccaa ttttgatgcc aaggccccaa      1080
     aaacaagatg gcggccaaaa tggacgctga aattgaaatt ttggtaaaac ggcacaaaac      1140
     gtcaagagag gtgtcgattc tcatgttttt tggatcgtag attccagaaa aattgtcatc      1200
     cagacccctc gacccacgga aatgcccaaa atccaagatg gcggccgatt ttggctcttt      1260
     agcggctaaa acgtcaaatg cggagcaaag agaggagtaa acacactaga tatctgtttt      1320
     cgaggtcaca gattccaaaa aaataggaga aaaaaatatt tcatgccaaa tggtgctgat      1380
     ttggatcatg caaaggccga actcggcagt cattttgawt agtgtgttca ggaacactct      1440
     aatcgaaata attttccggg tcagtttcta taattagcat tattggtttt ttttaaggta      1500
     cccctgcaga atatgggtaa atttgttctc aaatacacaa taaaactatt ccgatgagtt      1560
     ttgacccact aaatctgaaa attgcgttta ttmttccgga ttacccctca attttccgga      1620
     aaactaacca ggataatgac cattatttcg ggcggaatcg gcttttccag agaatggaga      1680
     tgttgcacgw awgagggatt tgcgattcga ccattgattc tcwtgtaaaa gttcgcgaga      1740
     aacacgatgg tgccactggt tttctctgaa atcatctccc aagctcaaaa aaagctctca      1800
     aagtgagtcc aaaatggagg ggatatccca tcctaccctg agagtccatc tctacatcaa      1860
     aacaaaccct ccatgcaaag atagggagca aatacattag cagggttgcc gtgttttcag      1920
     ttttggagtc cccaaataaa gtggtagccc tgtcaatgta tttgctccct atctttgcat      1980
     ggagagtttg ttttgatgta gaggtggact ctcagggtag ggcgggatat cccctccatt      2040
     ttgacctaaa cttgagagct ttttttgagc ttgggagttg ctttcagaga aaaccagtgg      2100
     caccatcgtg tttttcgcga acttttacgt aagaatcgac ggtcaaatcg caaaaccctc      2160
     acaaatgcaa matctccatt gtagggtgat ggaaaaaaac ggaggtttcc ggattcagcc      2220
     cctcaaaata cgtaggaatc accttaggta tctcatcggg gagacatggt tgtaattttt      2280
     ttgcttgtta aacagtgcca ttgccgggga gtacctgata ctctcaattt cgataataat      2340
     taatatatta cacatacata caaagccgct tttatagcga tctctggcgc tctgcgacac      2400
     cwtaccgcct aagttcccga tcctcctaag gcctttcagg gagttcacat accctcattt      2460
     ttctaaaacc ctgtgtcgcc accctttcac tgggcatccc ctttgtctcc tcccaggagg      2520
     aacccaatca agcatctttt acggcagtcc ttcgttcgtc attctattga catcgccaaa      2580
     ccagtcaagc tgtctgatca tgctgtcgaa tacgatgtca ttttcgactc ccatgatctg      2640
     acgcactctt tcattgcgga cccgatcgct tctaaaaatt cctacagcga cctcctccag      2700
     aaatccattt ccgttgctct tagcatcccc tgtgtccgtt ccttcagctg ccaaacttca      2760
     ctgtcatatg taagaatact ttggtcttcg caattgaaaa ttttcctctt gttctctttg      2820
     gaaatctacg gatcccggag gattccattg aatatagctg tagccttcct tgctacgatg      2880
     tttctttcct ttatcccttt atccgttctt ccatcctggg tcaacagaac ccccaaggac      2940
     ctatagtgcg cctttgatct gctgcccatc ctccaactta atgctatgtt gatcaccaat      3000
     agttttattg cgtgaacata tttacctata ttacggctct gctccgcatt tgacgtttta      3060
     gccgctaaag agccaaaatc ggccgccatc ttggattttg ggcatttccg tgggtcgagg      3120
     ggtctggatg acaatttttc tggaatctac gatccaaaaa acatgagaat cgacacctct      3180
     cttgacgttt tgtgccgttt taccaaaatt tcaatttcag cgtccatttt ggccgccatc      3240
     ttgtttttgg ggccttggca tcaaaattgg agagtccacc aaagattttc tcattctagg      3300
     gaccaaaatg aagagagtaa acttgcatca caaacgtgca aacgggacgt aattttcgaa      3360
     cacatgctcc cctgactatg caataaatcg ccttttcccg tcatttttta gcatttccgg      3420
     ccggttttca cttccgtttg gatccgtgcc ccatcgatgc acgttatagt aagggtttat      3480
     tactcgaaag tatacacctt aaggttgaaa tagatcgaga aaattggaaa ttgcagttac      3540
     aatccatgga atgtatcggt tacggtgtga aaaatcgtct ttttgcgtca atttcgagga      3600
     ttttcggtcg gtttccggtt tccatcaggc cgttaatcga tcggtgcatg tatggaaagc      3660
     gttgatagtc tgattttata catgttagag ggtaaagtgg gaaaaaatat cgataattga      3720
     agagttcatt atcgaaatat ttggattaac atgtgaaaaa tcgtcctttt ttaccaattt      3780
     ttagcctttt ttggcctatt tgaatttttt taggccctta accgtccgat ggcaattgaa      3840
     aaaagtatat caaccgaaag tatatatcct aagcttgaag tataaaaaaa aaatcgaaaa      3900
     tcggagagac tgttttttag ataattcagt ttgaacattg aatggcgaaa aaatcgtaaa      3960
     ttttaaaaaa ctctaaatta cggccgttta aataattttt agctcaattt tgatggcata      4020
     ttcagaatct acatgaaaaa ttggtctaga aacactcttt caaagtatga tggattgata      4080
     cagagtctcg ctatggagag tcaaagagag ggaagtcgag aaaatgagaa tcgctaaaac      4140
     gggcgttttt gaatatcact aaaattcacc ccatctttgg gggtcgatat ctcgcgaacg      4200
     gggcgtcgga tgggaaaacc cttcaaatta gtttcttaga atgatgtaaa gaccccgtat      4260
     accaattttc agccaaatcg gagggggtcg ggttccgacc ttggttgcgt tgacgtggaa      4320
     tgaccc                                                                 4326
//
ID   Sola2-N1_CQ repbase;    DNA;    INV; 1930 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A Sola2 DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1_CQ.
XX
NM   Sola2-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1930
RA   Kojima K.K. and Jurka J.;
RT   "Sola DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 628-628 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >96%
CC   identity. 4bp TSDs. ~90bp TIRs.
XX
SQ   Sequence 1930 BP; 688 A; 289 C; 279 G; 671 T; 3 other;
     gagcaattct ctgagatttc ggtcattcga ttttttctgt attttttaat ccggctgaaa        60
     cttttttkgt gccttcggta tgcccaaaga agccattttg catcactagt ttgcccatat       120
     aattttccat acaaatttgg cagctgtcca tacaaaaatg atatgtgaaa attcaaaaat       180
     ctgtatcttt tgaaggaatt ttttgatcga tttggtgtct tcggcaaagt tgtaggtatg       240
     gatatggact acactggaaa aaaatgatac acggtaaaaa aaatttggtg atttttwatt       300
     taactttttg tcactaaaac ttgatttgca aaaaaacact atttttaatt ttttttattt       360
     tttaatatgt tttagaagac ataaaatgcc aacttttcmg aaatttccag aatgggcaaa       420
     aaatctttga ccgagttatg attttttgaa tcaatacaga ttttttcaaa aaatcgaaat       480
     attggtcgca aaaatttttc aacttcattt ttcgatgtaa aatcgaattt gcaatcaaaa       540
     agtactctag tgaatttttg ataaagtgca ccgttttcaa gttataacca attttaggta       600
     acttttttga aaatagtcgc agtttttcat tttttaaaat tagtgcccat gtttgcccat       660
     ctttgaaaaa aatatttttg aaaagctgag aaaattctct atattttgct ttattgaact       720
     ttgttgatac gacccatagt tgctgagata ttgccatgca aaggttaaaa aacaggaaaa       780
     ttgatgtttt ctaagtctca cccaaacaac ccaccatttt ctaatgtcga tatctcagca       840
     actataggtc cgatttacaa tgtaaaaaca tgaaacattc gtgaaatttt ccgatctttt       900
     cgaaaaaaat attttcaaaa atttaaaatc aagactaaca tttcaaacgg gccaaacatt       960
     caatattacg cccatttgaa atgttagtct tgattttaaa ttcttgaaaa tatttttttc      1020
     gaaaagatcg gaaaatttca cgaatgtttc atgttttaac attgtaaatc ggacctatag      1080
     ttgctgagat atcgacatta gaaaatggtg ggttatttgg gtgagactta gaaaacatca      1140
     attttcctgt tttttaacct ttgcatggca atatctcagc aactatgggt cgtatcaaca      1200
     aagttcaata aagcaaaata tagagaattt tctcagcttt tcaaaaatat ttttttcaaa      1260
     gatgggcaaa catgggcact aattttaaaa aatgaaaaac tgcgactatt ttcaaaaaag      1320
     ttacctaaaa ttggttataa cttgaaaacg gtgcacttta tcaaaaattc actaaagtac      1380
     tttttgattg caaattcgat tttacatcga aaaatgaagt tgaaaaattt ttgcgaccaa      1440
     tatttcgatt ttttgaaaaa atctgtattg attcaaaaaa tcataactcg gtcaaagatt      1500
     ttttgcccat tctggaaatt tctgaaaagt tggcatttta tgtcttctaa aacatatcaa      1560
     aaaataaaaa aaaataaaaa tagtgttttt ttgcaaatca agttttagtg acaaaaagtt      1620
     aaatataaaa atcaccaaat tttttttacc gtgtatcatt tttttccagt gtagtccata      1680
     tccataccta caactttgcc gaagacacca aatcgatcaa aaaattcctt caaaagatac      1740
     agatttttga attttcacat atcatttttg tatggacagc tgccaaattt gtatggaaaa      1800
     ttatatgggc aaactagtga tgcaaaatgg cttctttggg cataccgaag gcaccaaaaa      1860
     agtttcagcc ggattaaaaa atacaaaaaa taaaattaag aaaaaagacc gattccgtag      1920
     agaactgctc                                                             1930
//
ID   Sola2-N1_DTa repbase;    DNA;    INV; 972 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-972
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4698-4698 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 4-bp TSDs, mostly ATAT.
XX
SQ   Sequence 972 BP; 316 A; 180 C; 176 G; 300 T; 0 other;
     gggacgctcc atatcaaccc ggccaccccc cttttttttt aattttctat gtggacagta        60
     ccacattgat tgcaaagccc cttgcttcca atattttacc tcatacccat tttttcaatg       120
     ttaccactct ttcgccgtat aatcgcgtaa aaaagaaaac acaaaatcat ttttatcctg       180
     cgaacggaag aaacaattgg catggttcaa aatcagaaaa acctgtcttt ccatagccgg       240
     ttacgagaaa aataatagat tttattagac cgtagatgac caagcgatag cgtttttaaa       300
     gtctaaaagt aggatttcgt ccaaagggcc agtctgcaaa aataccatta tatttttctc       360
     agaaagcccc atatttaacg gattttatgc cactgatttc aaagtgggat ctctcttgag       420
     gaattagcta tgaattcttt tgtacgtttt tgtagtagtt aactgtcaga aaaagctaat       480
     aagtaatata aaataatcgt atatgctttg gaaaaaatta acaaatcaat gaaaagaatt       540
     catagctaat tcctcaagag agatcccact ttgaaaccag tggcataaaa tccgttaaaa       600
     ctcgggcctt ttgagaaaaa tataatggta tttttgcaga ctggcccttt agacgaaatc       660
     ctacttttag actttaaaaa cgctatcgtt tggtcatcta cggtcttaaa aaatctatta       720
     tttttctcgt aatcggccat cgaaagacag atttttctgc ttttgaacta tgctgattgt       780
     gcctttcgtt cgcaggttaa aaatgatttt gtgttttcct ttcagcgcga atatacggcg       840
     aaagagtggt aacattgaaa aaatgggtat gaggtaaaat attggaagca aggggctttg       900
     caatcaatgt ggtactgtcc acatacaaaa aaaatcaaaa aagggggtgg ccgggttgat       960
     atggaacgtc cc                                                           972
//
ID   Sola2-N1_LMi repbase;    DNA;    INV; 2736 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 19.12, Created)
DT   16-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2736
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3310-3310 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 2736 BP; 920 A; 457 C; 473 G; 884 T; 2 other;
     gagtcattcc atgtcaaatc aacacacttt aaataaaaat tttacctcac cctcttagat        60
     tttgctgaaa gttggtatac ttatagtggg tgctgaaact aagaaaaata ccaaatttca       120
     gttttttacc tcaaaccatt cctgaaatat ggtcatgtaa acttttcaaa aactggccaa       180
     aaatgagtga acggactttt tttaaattgc cctaagagct gccctaattg agctagagag       240
     ctgggaaagg tgtcattttg cagcattttt catgctcttt ccagtgatat acaacaaaac       300
     atagcttcta attaataacc tttttcaaaa tactaattaa tattttgatt taattttttt       360
     acaaaaagta cataattgaa aattttcaaa atatttccat aactacttca tactgttgta       420
     aatcacatgg caaaatataa atgtgggatg atgatgggtt cattgttaaa aaattattcc       480
     ggactcttgt ttttcactaa cagccctagt ttgaccaaac tgacctttaa caaacaggaa       540
     tttcattaaa atatactgaa aggtaagtaa aaaaaaaata tcaaaatatc acctttgtta       600
     tatattacaa acaggaagac aaaattgagc atatgagctt tgtcattgtt accgattgcc       660
     tggagcacaa cagaactgcg gtttacacct ttcaaaagaa gcttatttct tatctaacaa       720
     ataaatttca aaagcttcca agaaagatat actattattc tggcggttct gctgctcagt       780
     acaaaaataa gaaacacttc ctgaaccttt gccttcatgg ggaagacttc aacataaaag       840
     ctgagtggca cttttcagcc acagcacatg ggaaagagcc ttgtgatgga gtagggggtt       900
     cagttaagag actggcagct cgtgcaagtt tgcgaaggcc acaccaaaat cagatccaaa       960
     ccgcacgaga tctatttgag tgaagactac actgcttcag aaatattaaa aagccggctt      1020
     gaagaggcat tgacaatcaa aggaacacag caattttgca ctttcattcc caacactaca      1080
     tcaaaattaa tagtcaaata cttttcaagt gatatgcaga gttgggagag ggaagtaact      1140
     acatcaccag acaaactkaa gttacaagat gtatcaggct atgtcaccac tgtatatggc      1200
     agaaactggc ggcttgggta cgttttagag aggggaaaaa actaagaact tgatgaagtg      1260
     aaaacaactt ttcttcatcc atgtggacca gctaagtcat tctccaatcc tgcacatgca      1320
     gatgtcctgt ggggctaaac tgcagagtct gttgcccacg cactgcaaac gttggcaaca      1380
     ctacagaata caccatgcag tcaaccatag agcaggtagc atgttttatt tattttatga      1440
     tctgtacgaa acagtgatca ttttaagtgg aagttaggtt aggttaggtt aaacaagaag      1500
     ttatttttag tatgtgaggg cgcgtagcgc ccgaatctcc ggttcagaaa cactcagatt      1560
     attgctttcc catagtgctc atggcgaagt tgccaacata cgtgccacgt taataacacg      1620
     ggcaacagac tgcagtttta ccgtcctgtg ggtgtcagtt gtggatgttc tcacaaaagt      1680
     aaatccattt actccggcag ggagaacata cattcttaat gaaagtgatg taaaccaaac      1740
     ccagtcggct ttattaaaat gtaatctttg aagttccaag acaatttatt gggaaaactg      1800
     ctttcaactc aaaacttaat ttttgtctca ggttagtgtt aatgtatatt ttatagaaag      1860
     ttgtttcaaa attactgtca gtacctactg tgttaaattt agctatgtat agatacctgt      1920
     tactcaaaaa caagcattat atatttaatt ttttaatagt ttcattccaa acaccatgga      1980
     ccagaactat tatgtaaata cttgtacttt ttcatacttt atttcagttt gtagttaaat      2040
     gctcaagatt tttgttttta tcagttaata tactgttagt taagttgtat gaaattaaaa      2100
     taagcaatca acttaattat atgatgatta gttttgtttt aataaggtga tgttttgata      2160
     tttctaatac tttttttact tacctttcag tatattttaa tgaaattcct gtttgttaaa      2220
     ggtcagtttg gtcaaactag ggctgttagt gaaaaacaag agtccggaat aattttttta      2280
     acaatgaacc catcatcatc ccacatttat attttgccat gtgatttaca acagtatgaa      2340
     gtagttatgg aaatattttg aaaattttca attatgtact ttttgtaaaa aaattaaatc      2400
     aaaatattaa ttagtatttt gaaaaaggtt attaattaga agctatgttt tgttgtatat      2460
     cmctggaaag agcatgcaaa atgctgcaaa tgacaccttt tccagctctc tagctcaatt      2520
     agagcagctc ctagggcaat ttaaaaaaag tccgttcaca catttttggc tggtttttga      2580
     aaagtttaca tagccatatt tcaggaatgg tttgagataa aaaattgaaa tttggtattt      2640
     ttcttagtct cagcacccac tataagtata ctaaatttta gcaaaatcta aaatggtgag      2700
     gtaaaatagg tgtgttgatt tgacatggaa tgactc                                2736
//
ID   Sola2-N2_AAe repbase;    DNA;    INV; 2373 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   11-JAN-2017 (Rel. 22.01, Last updated, Version 3)
XX
DE   A non-autonomous Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   otherMITEs_Ele3a; Sola2-N2_AAe.
XX
NM   Sola2-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2373
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2373
RA   Kojima K.K. and Jurka J.;
RT   "Sola2-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as otherMITEs_Ele3a.
CC   [2] Consensus update and characterization as a non-autonomous
CC   Sola2. ~98% identical to consensus. This consensus is ~95%
CC   identical to the original sequence in [1]. 4-bp TSDs. TIRs are
CC   ~780 bp long. Both terminal 800 bp are ~86% identical to those of
CC   Sola2-4_AAe.
XX
SQ   Sequence 2373 BP; 768 A; 416 C; 429 G; 760 T; 0 other;
     tgagcaattc tcgctgaaac caggccgcca tcggcaccca tcgttagaat tccaatttta        60
     tgtcactgat cgctagtttt cgataaaact taagggtggt cctttctgtt ttctcaaatt       120
     ggtggacccc tcgtacgcca gctagctgaa cagtttgcga aaaagcccat tttttgataa       180
     atcttgggta tttcttcacg ggatatgtct catatttcgc ttggaacaca tagcaaactt       240
     agtggcatcg tatagagaaa ggatatagct ttcatttaaa ctcgaaaaaa ttttggcggc       300
     cattttgaat ttggccgcca tcttgaattt tgttagaaaa atcgattttt caccattagc       360
     gcaccgctag ttttgaattc tgagatcacc atcagaaagc tgaggaaaaa ttgcgtaaga       420
     taggctacag aaactaggtg agcaatggta tttaccctat caaatgaacg attttctaaa       480
     tcatgttata cgattttgac gtatatggcg agtgcaatca atacaaacat cattttttgt       540
     acaacaaaga aacaagtttt caacctttgg tgttttattc gagtcgagta aagaataaga       600
     atattatttt tagtgaaaaa atctggcggc catcttggat tttgacgcca tcttgatttt       660
     aggtagtaga attaattttt caccttgata gcactcagca tgtcgaattt agaggctacc       720
     aataaaaaaa ggttacgtat actcttcttc ttattattct tcattttact gacgttacgt       780
     ccctactgga accgagcctg atactcagct ttattagtta taaatccagg ttattaaaca       840
     ggaattttct tttttaatgc gatttctgac aacagaataa ttcttcgaca tatctttgaa       900
     ttcagtaata atgaataaat aaattcaata aatgaaaacc gtcaaaaaac attgattgta       960
     ttaaacaaac atttttttac cctatgcatt gttgttcatt gtatgaagtt tatagattgc      1020
     gtgtcgggac attagtaagc cttgtggtaa tatctgtagt tctaacgtaa aacattgaca      1080
     aaagtgcatt aatttataat gaaagtctta aattttgaag caaaaaacat ccttgatttt      1140
     ctaagtcata aagtatcgtt tttagtaccg cccaacatgc atgtgaaaaa tagcgaaatt      1200
     gaatgatgag aagcaggttt tgttctaatg tggacgtaat gccgaaaggc aggtgtataa      1260
     tttcgaggtt agaaaaactg gcggccatct tggctttcga cgccatcttg gtttttagca      1320
     gttgcatgat tttttaccat ctcagtgctc atcatgttga attataaggc ctccgttaaa      1380
     aaaaaaacaa tcagattcta tctttcttat cttatctcag ctgttcaact gattgttcat      1440
     ttgtatcaat ggttttagac caaataaatg aaagaaataa tgctatttta caactcgaag      1500
     atatgcagaa gaatcattca ggtagcaaat aagcgttaaa aaaatcctat ttgataattt      1560
     gtttttaaaa ctagttaagc tgaagggctg gctctgttcc agtagggacg taacgtgagg      1620
     aaaaagaaga acaagaagaa gaataagtgt aacggtagca ttgaaattca acatgttgag      1680
     tgctaacaag gtgaaaactc attctactac ttaaaaccaa gatggcgtca aaatccaaga      1740
     tggccgccag attttttcac tcaaattaat actcctattc ttcatctgtc tcaaataata      1800
     caccaacgat tgaaaacttg tttctttgtt gtacaaaaaa ttatgtttgc attgattgca      1860
     ctcgccatat acgtcaaaat agtagaacat gatttagaaa atcgttcata tcatagggta      1920
     aatacctttg ctcacctagt ttttgtagcc tatcttacgc aatttttcct cagctttctg      1980
     atggtgatct cagaattcaa aactagcggt gcgctaatgg tgaaaaatcg atttttctaa      2040
     caaaattcaa gatggcggcc aaattcaaaa tggccgccaa aatttttttc aagtttaaat      2100
     gaaagctata tcctttctct atacgatgcc actaagtttg ctatgtgttc caagcgaaat      2160
     atgagacata tcccgtgaag aaatacccaa gatttatcaa aaaatgggct ttttcgcaaa      2220
     ctgttcagct agctggcgta cgaggggtcc accaatttga gaaaacagaa aggaccaccc      2280
     ttaagtttta tcgaaaacta gcgatcagtg acataaaatt ggaattctaa cgatgggtgc      2340
     cgatggcggc ctggtttcag cgagaattgc tca                                   2373
//
ID   Sola2-N2_DTa repbase;    DNA;    INV; 767 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-767
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4651-4651 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly ATAT.
XX
SQ   Sequence 767 BP; 236 A; 123 C; 137 G; 271 T; 0 other;
     gggcacttcc aaaatgtcgc tcgggacatt tgcacacctt taaagttgaa aaaaaattgt        60
     aaaacaatgg attttaattt taattatggg cttttctttt cactcttccc aagctctatt       120
     tttggtaaaa atcttgattt tgtaccactt ttagttttta agatatcggt aaaaaactgc       180
     cgtattcgct cgggacaaaa atagaagtgg atttcgggga agttcataca acaccagaaa       240
     ttagcgaatt ctgatggaat atttgaatgc gatttttttt agaatgttgt tcaaacatgt       300
     cgctgtgaaa tgcttttggt ttcactcaaa aattctttgc cgtttttttt ttatgcagtt       360
     tcaaccacat tcgctcggga catgtcgctc gggacatttt ttccgactgt tttgtaaagc       420
     ggatttcttt acctctatct ctcaattgct ggatgttttg cttttaactt aatagtttag       480
     catgtgaatg aagcattcag tacagaaaaa tgtcacatat tagcattcct ataggataaa       540
     ttaacaacag aagacaggtc caaaaaataa caaaaaaata gccaaaaact gatttttgcg       600
     tatattggtg gggtttgtca taaaaataat caaactatac tccaaatttg tagttaagct       660
     cagtatccaa ctaattagaa actaatatcg gggcaaaatc atgtggaaat atgttttatt       720
     caagtttcaa ggtttttggc ttggtggact tttttttgga agtgccc                     767
//
ID   Sola2-N2_LMi repbase;    DNA;    INV; 2511 BP.
XX
AC   .
XX
DT   09-JUL-2014 (Rel. 19.12, Created)
DT   09-JUL-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2511
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3311-3311 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus. TSDs are 4-bp long.
XX
SQ   Sequence 2511 BP; 803 A; 481 C; 500 G; 725 T; 2 other;
     gggtcattcc acgtcaaatc accaaatttt ttttaaatgt tgaagctcga ccatcttcaa        60
     tttttttcaa attttaccag aatgttgtta aaggtcttaa aggatgttat acaaaatttt       120
     aggccgatat ctaaagtggt cgaggctcca gggccgcttt tgtggaaggg tgtcatgcgt       180
     cgcgcgtgtg cctgaggaac ttttggscaa gtttgcgctt tcatttctca gcagctaagg       240
     tacttcacat tttcaaatct gggtttctag ataagttttg tgcagagaat tgaaaaataa       300
     cattatcatg ggtaaagatt aagtagttct attttaattt tttttttttt tttttcaaag       360
     tcaggcgaaa atttcgtgac ccaaaattta aggccgactt tggcagtccc ttactaaacg       420
     actaatccgt tgtacacctt gatattccgc ctttgtgtac aggttctgcc tggtaagcca       480
     gtgtaacaat ggtaaaactg tgtcttctat agtttttgag gtaatgatcc agaaagttgt       540
     ctccaaaaaa ccagaacgca aaatttgacc aagtttggag gcaaatatct tcaaatacgt       600
     cacctctgat tttaatttaa attgcaccat tagaaagagc agctttttct ctgctagaat       660
     attgattgtt tatcctgggc gctctatgag ttgaatggtt acagaacttg aaatatgatg       720
     taacttatca tacgcaattt atgtattaat acacgaaaac atggaagcaa catccatagt       780
     taacctccac tattaattaa tgtataaaaa gcaatctaca aaagaaacgt aaaaataaat       840
     cagcgtttac gtatatgtat caagctatca gtaagaacgt caatttaaca acagtagaag       900
     aatgtattgt tatgcatgtt aacgtaataa gattcacttt cttacctaaa gatcacgaag       960
     gttacacaaa caatacactg cagtgcttaa aacgactcag cgcggtagaa ccaccttggc      1020
     acaaacatag tagcagtgac gacggcacaa gggtggcgag gactcgtggc ccgaaaacgc      1080
     agcggcgtgg agtcgaacgc ggatcgagga aaacgcgatg ggtacacaac tgtgtcgttt      1140
     ggtgcgcgtc caccacggaa gaaagcttca aactgccgag accagtcaac aaaaagtttt      1200
     acctgggtgg gacctgctct tttgtcagcg gtgtcgccgg gcgccccgag agagcaataa      1260
     actgtttcgc ccagtgggcg gacgcaggaa gtggccgcgg ataactgcac attcacattg      1320
     tgctcaatat tctagtaaag cgaaagctgc acttcctaat agtgcatttt aaattaaaat      1380
     cagaagtgac ctatataaat ataatggcct ccaaatttgg tcaaatttag tgttctggtt      1440
     ttttggaggc aacttcctga accattatct caggaactac aaaagataca gttttgccat      1500
     tgtttcactg gcttgtcatg cagaacatac acacaaaggc ggaataacaa ggtgtaaaaa      1560
     tgatamgctg tataaaaagg gaatgccaaa gtttacctta tatttttggt aatggaattt      1620
     acgtctgaat ttaatttaaa aagtaaacta cttaatcttt acccatgata atgttatttt      1680
     tcaattatct gcacaaaact gatctagaaa cctagatttc gaaatgtgaa gtaccttaga      1740
     tgcaaagcag tgagagtgca aacttggccg aaaatttgtc aaacatgcat ttgcagagat      1800
     cggaccgtca ttttccaaac cgttttgcag gtcaacccat agagggccca ggataaacaa      1860
     tcaatattct agcagagaaa aagctgctct ttctaatggt gcaatttaaa ttaaaatcgg      1920
     aggtgacgta tttggagata tttgccgcca aacttggtca aattttgggt tctggttttt      1980
     tggaggcaac tttctggatc attatctcaa aaactataga agacacagtt ttaccattgt      2040
     tacactggct taccaggcag aacctgtaca cagaggcgga atatcaaggt gtacaacgga      2100
     ttagtcgttt agtaagggac tgccaaagtc ggccttaaat tttgggtcac gaaattttcg      2160
     cctgactttg aaaaaaaaaa aaaaaaaaaa aataactact taatctttac ccatgataat      2220
     gttatttttc aattctctgc acaaaactta tctagaaacc cagatttgaa aatgtgaagt      2280
     accttagctg ctgagaaatg aaagcgcaaa cttggccaaa agttcctcag gcacacgcgc      2340
     gacgcatgac acccttccac aaaagcggcc ctggagcctc gaccacttta gatatcggcc      2400
     taaaattttg tataacatcc tttaagacct ttaacaacat tctggtaaaa tttgaaaaaa      2460
     attgaagatg gtcgagcttc caccccttgg tgatttgaca tggaatgacc c               2511
//
ID   Sola2-N3_AAe repbase;    DNA;    INV; 2439 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N3_AAe.
XX
NM   Sola2-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2439
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1305-1305 (2011).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. 4 bp TSDs. TIRs are ~690 bp long.
XX
SQ   Sequence 2439 BP; 866 A; 398 C; 395 G; 780 T; 0 other;
     gacggatttc acgccaactc gacaaaggga ttggcagcac cccttcagaa ttcaatgaaa        60
     ctttctgggt gtgaagacta tgtgaaacta agatacttta catactttgt tttttcaaaa       120
     tcgatctaga ctaacatttg gaaagggtca aagttttttt tttacttttt ttataaaccc       180
     gtataactcg aaaacggtaa gacctacaaa aaagtgttgt atgggggact gtcgtgaaat       240
     ttcctgacgt tttagaaaaa aatattgaaa aaataaaaac acattttcta cactgaaaaa       300
     aaaaagtatt caaaacttta aagtcgattt aaaaaaacgg ccatttcaga ttttgatcat       360
     ccttaagcaa aaagtttcgt aattaaattt actaaaagtc gtccatacat tgcaaattgg       420
     gcatatctaa gggaaaaaag tttttctaac aacgaatttt tcaagtccaa aactgatttt       480
     tttttcaaag attttgttct aaaccgtcaa atatgatcgt gttttcaagt gataaatgag       540
     tttgaatcag aaataaattg tattttttat tgagaatagt taaaaaacgg aattatgcag       600
     tgattatgtt tttttaaatg aaggcaatct atggatttcg cctctgccta tgagaaaatc       660
     aactccgtct aacaatccga cggattttta tggttcgaaa gattgcaaac attgaaaagg       720
     aacaacctga tccatacccc attaaatttt cttctagaaa atactactaa acgtacctgc       780
     gttacaagcc agatgaataa gaaataatgt ttgtattgtt atctacctaa aatgtccgtt       840
     aacgacctga gttactcaac aatcaccgcg tgagtgtata gaaagatagg tatttaactt       900
     ataattgtcg ttctacctat gcatataact atttaagctt gatgtcaata aaactctttt       960
     cattttatct aagtcatttg tgaaaagaag ttaaagatgg atcaacaaga tttatcgcgc      1020
     attaaaattt cgagatgttg cgccggtata aacaatccta agtgcaggcg tagccagttg      1080
     cgaaacttgt caccaacaat gatcgaacac atacgtgcta tgggatatag tcatcagctt      1140
     gatgaaacta tgcatatttg tgagtcatgt cgcttagtga tcaggctcca cagaagtccg      1200
     cctaagaaaa aacgacggca aaggcccctg tgacgctatt ggtggcactc tcaagcgaat      1260
     ggcaaaaaga gcaagtcttg caaaagacta tggaaacaca atcgcaactc cgcgagaact      1320
     attcgactgg gcagtgaaac aaactgatac atgtatcacc aaattaaatt tctgttatat      1380
     atctaatgaa caatatgtta aaatgtcaga ggaattggtg gaattgtttg ataaggttaa      1440
     aactgtccct ggtacccaaa aatatcattg ttttatgcct attagtgata cacaaattgc      1500
     agccaaacgg tataccaatt cagaggatga accaaaaata ttcaatttat tcagtaaagc      1560
     ccaaaaataa tgtaaatatt catgtgcaga tactacgttt taggatatat agcaataata      1620
     aaaataatga tgcatgataa aaaaaaccac gacttttttt cataagcata atattgaccc      1680
     tttccagaca cctgttaaga ttggctttga ccaaataaga aatgaaatat tattgtgata      1740
     tctttccaac cataaaaaaa cccatcggat tgttagacgg agttgatttt ctcataagcg      1800
     gtttggtgcg agatcaattg tatttaataa aaaaaactct gtataattcc gttttatttc      1860
     ttttaactac tcccaataaa acaaatataa tctattttgt gattaaaact catttatcac      1920
     ttgaaaatat gatcatacta gactatttaa agcgaaataa aaaaaaaaat tttggactta      1980
     aaaaattcgt tgttagaaaa acttttttcc ctaaaatatg cccaatttgc aatgtatgga      2040
     cgacttttag taaatttaat tacgaaactt tttgcttaag gatgatcaaa atctgaaatg      2100
     gccgtttttt ttaaatcgac tttaaagttt tgaatcattg ttttttcagt gtagaaaatg      2160
     tttttttatt ttttcaatat ttttttctaa aacgtcagga aatttcacga cagtccccca      2220
     tacaacactt ttttgtaggt cttaccgttt tcgagttata cgggtttata aaaaaagtaa      2280
     aaaaaaactt tgaccctttc caaatgttag tctagatcga ttttgaaaaa acaaagtatg      2340
     caaagtatct tagtttcaca tagtcttcac acccagaaag tttcattgaa ttctgaaggg      2400
     gtgctgccaa tcgcgtgtcg agttggcgtg aaatccgtc                             2439
//
ID   Sola2-N3_DTa repbase;    DNA;    INV; 1040 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.09, Created)
DT   08-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1040
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4652-4652 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 4-bp TSDs.
XX
SQ   Sequence 1040 BP; 362 A; 141 C; 176 G; 360 T; 1 other;
     gggtaagaat ttctcaactg cgcatatgaa attttagatt ttcttcaaac tcgggtactt        60
     tgaagagttt gccttggtta tcatctgtga tttttttgaa attttttggt gtccatttgg       120
     gggcgctatg aatttttgaa gttaagaact taaaaaatgt tctcaaactt caaattagta       180
     tatctcgaga acggcttaga agaacaacgt gcaactttac acgtttttaa atgtgtactg       240
     ggggagttag aaaataattt tcttaaattt tttgttgtcc aataagtatg aattttaatt       300
     atttcaaatt ttttatcgcg gttctcgatg ggttttgtta ttgttaagaa ggtaggcttt       360
     gaaaaattat tgtttcagat ctgtaactat aaattttttc aaagcctacc ttcttaacaa       420
     taagaaaatc catcgatttg tatggcagct atatgaaggg acggtggtaa aattatgata       480
     ttaatatatg tgcataatat cagtgagtaa ttgagttgtg caaactttca gcttaaacat       540
     gtaagaattg tactcattgg aaatataaat agggtttttc taaattcgca taaaaaatta       600
     tatatcttgg aaatgatgaa aaggaacaaa aatgtttctt cgggtaaatt aagttggtta       660
     tgagatggac aatcttggat agttaagttt cttttatagg atgaagaaga caktcaaaac       720
     cgcgataaaa aatttcaaat aattaaaatt catacttatt ggacaacaaa aaatttaaga       780
     aaattatttt ctaactcccc cagtacacat ttaaaaacgt gtaaagttgc acgttgttct       840
     tctaagccgt tctcgagata tactaatttg aagtttgaga acatttttta agttcttaac       900
     ttcaaaaatt catagcgccc ctaaatggac accaaaaaat ttcaaaaaaa tcacagatga       960
     taaccaagcc aaactctacg aggtacccga gtttgaagaa aatctaaaat ttcatatgcg      1020
     cagttgagaa attcttaccc                                                  1040
//
ID   Sola2-N4_AAe repbase;    DNA;    INV; 3338 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   19-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A non-autonomous Sola2 DNA transposon family from Aedes aegypti.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N4_AAe.
XX
NM   Sola2-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3338
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1306-1306 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. TIRs are ~1010 bp long.
XX
SQ   Sequence 3338 BP; 1166 A; 568 C; 544 G; 1058 T; 2 other;
     gagcggttcc acgccaaatc ggtaaacgat gaaactcgac taccttggat tcaaatggaa        60
     ttttgcacat agtttcgata taatagaata agttttttcc actggtggag agaccattta       120
     aaatcaagag taacttctga taagggcgta agtattttta gcatcaccat ttaaaaaaaa       180
     tgtacctcgg aaaccgtttg ttatagagaa aaagtgtctg aggagggatg gtagacaatc       240
     aaataggctt tgtaaaaaaa atatacactg aaaaaaaaat acttttattt tcatgaaaaa       300
     atcgaaatta aaccttaaaa cacaaattgc aaaaaatagg tatcttcgat ttttttcaan       360
     ttttttctgt aaaatttcaa tgtaaaacca gatgttttaa gcacagtttc aacatggtgc       420
     aatctaaaat aaaaaagttt ttctaagagc aacttttggt gcatttctga aaattcaatt       480
     tctggccgta gaaaagacgt tttgatgctg taatatgatt cttcacccaa aaacaattca       540
     aaatgctaat aacaatgatc ttcctaaaac tagccgtttt caagatattt aggattcaat       600
     tatattaata tcataaaact taagaaaata cgcccgtttc ataagttact ccagatgctc       660
     caccaacaat gttacgttta tctctttcca cattaatatc ccatgtttta agggcagttt       720
     caacatggtg caatttaaaa taaaaaagtt tttctaaggg caacttttgg tgtatttctg       780
     aaaattcaat ttctggttat agaaaaggcg ttttgatgct gcaatatgat tctttatcca       840
     aaaacaattc aaaattctaa tatcaatgat cttcctataa gtaaccgctt caagatattt       900
     gggattgaat tatattaata tcataaaact taagaaaata cgcccgtttc ttgcattatt       960
     ccagatgctc catcaacaat gttacgttaa tctcttccca cattattggg tatttcgttc      1020
     accactggac tgcgcagtca gttttcataa gtgcgagaat gtaaataaaa gtgcgatcct      1080
     gcatcaaatc ttgttggtgt cttcagcgca cttattctac gatttataat gaatgagtgc      1140
     gctgaagaca tcaacaagat tggatgcaga atcgcacttt tattttcctt ccctcactta      1200
     taaaaactaa ctgcggagtc cagtggtgaa tgaaatgcgc aataatatcc catcaacttt      1260
     atctttgaca cttacacaaa taaacgaatt gttgagaagt aacaataaca atatgtaaca      1320
     atattattag ccgccaccaa tccctccaaa atgatccgtc aaacaaacca agacaaatac      1380
     ggaggcaatg aaaacaatag ttgatcaagc gctcggctcg ctcggggcac atggtaaagg      1440
     gccatgtgat gccattggtg gcacattgaa aaggatggct actagagcta gtctggcaag      1500
     acagcatgag catccaatca ctaatgcaaa agctttgtat gagtgggcta gtaagcggag      1560
     agaagaatac ctgacaaaat tgtcattttg ttttgtgtca caggaagatt acgaacaagg      1620
     atcagaagaa ctaagtaaca tacatcaaca agcaaagcta attccaggaa cacagaaatt      1680
     ccattgcttt gtacccattt ccgaaaacaa aatcgcagca aaactgtatt caagtgatga      1740
     ggcagtaagc tattataatg tttatagaaa agtaaaaaca taatcaaata agttgacatt      1800
     taanatctgt tctataccaa tatatattaa aacaaataaa aatattaaaa ttatgtacaa      1860
     taatcgtgag aataaataaa taaggttaag aagtttaaag gcgtttttcc ttcttcccct      1920
     ccttaacatc attcatatta tcatcttcca tcgtaatacc acagacaaac agaagtaaca      1980
     cctagaacat ttttcacaaa attctctcga ccacaaatac taccaccatc tagtgagctt      2040
     attgaacgaa ataacttttt gtgccacatg tccaacaggt ggcggtagtg tgaaatgtca      2100
     aacacgaagg aaagcgacgc gcgcgcctct ggttgtgaac ttgacaactg ttgtatttta      2160
     aactgatcgt taaattcgtg ggcgatggaa atttatccag tgttacgtct gtttgtctgt      2220
     ggtaatactt atattaattc tcaacaatat tccaacaatc atcctgtatc tttcgaacag      2280
     ttcatccaac cgtctaaatg tcaaagaaaa agtagatggg atattaatgt gggaagagat      2340
     taacgtaaca ttgttgatgg agcatctgga ataatgtaag aaacgggcgt attttcttaa      2400
     gttttatgat attaatataa ttcaatccca aatatcttga agcggtaact tataggaaga      2460
     tcattgatat tagaattttg aattgttttt ggataaaaaa tcatattgca gcatcaaaac      2520
     gccttttcta taaccagaaa ttgaattttc agaaatacac caaaagttgc ccttagaaaa      2580
     acttttttat tttaaattgc accatgttga aactgccctt aaaacatggg atattaatgt      2640
     ggaaagagat aaacgtaaca ttgttggtgg agcatctgga gtaacttatg aaacgggcgt      2700
     attttcttaa gttttatgat attaatataa ttgaatccta aatatctaga aaacggctag      2760
     ttttaggaag atcattgtta ttagcatttt gaattgtttt tggatgaaga atcatattac      2820
     agcatcaaaa cgtcttttct acggccagaa attgaatttt cagaaatgca ccaaaagttg      2880
     ctcttagaaa aactttttta ttttagattg caccatgttg aaactgtgct taaaacatct      2940
     ggttttacat tgaaatttta cagaaaaaat ttgaaaaaaa tcgaagatac ctattttttg      3000
     caatttgtgt tttaaggttt aatttcgatt ttttcatgaa aataaaagta ttttttttca      3060
     gtgtatattt tttttacaaa gcctatttga ttgtctacca tccctcctca gacactattt      3120
     ctctataaca aacggtttcc gaggtacaat tttttttaaa tggtggtgcc aaaaatacat      3180
     acgcccttat cagaagttac tctcgattct aaacgatccc caattatatg agataatttt      3240
     cgtctcatat acttaataca tctgcgcagt ttcatccaaa tcggaatggt acatgtcaga      3300
     tttcagcatt ttatggacga tttcgcgtgg aaccgctc                              3338
//
ID   Sola2-N4_DTa repbase;    DNA;    INV; 675 BP.
XX
AC   .
XX
DT   04-AUG-2021 (Rel. 26.09, Created)
DT   16-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Sola2; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   Sola2-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-675
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4653-4653 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 4-bp TSDs, mostly ATAT.
XX
SQ   Sequence 675 BP; 202 A; 121 C; 114 G; 238 T; 0 other;
     gggcaattct ctgctgttgc acgcgacgtt cgtacgcttt gcaggtgaaa aatactatct        60
     tccagtactt cttttccttt ggcactaggc tcaaattaaa ggtcttgatt agcactaaaa       120
     tatgtgctag gggtgacatt gggacatttt tcatttttaa gatatataaa aaaaaccaag       180
     acttttgcac gcgacacgaa tagaagttac ttttttgact tcctgcctaa ctttcgattg       240
     taacgaaacg tgaaggaata ttttaatgca gttaatttca tagtgttcct tggtctttct       300
     tctttaaaat gtatttggtt tgaattcaaa atattgagtg gttaattttt tattagtatc       360
     gaagtgactg tcacacgcta catgtcgcac gcgacagttt tttccgtcat tttcttaggt       420
     ggtttttctg caaccttaac gtcaaaaaaa ccgtttaaga gccactttaa aaaatactaa       480
     aaaaatacca aaaaatgact tttttgtcca tataaccggt attaccctgt aaaattatcc       540
     aaggatactc atattactta gcttagttga ggatccatct aactagaatc aaatatcagt       600
     gcaaaatcat gtagaaatat gtttttttca agttttacgc tttttggctt ggttgacatc       660
     cccagagaat tgccc                                                        675
//
ID   Sola3-1N1_AA repbase;    DNA;    INV; 3041 BP.
XX
AC   .
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   10-JAN-2019 (Rel. 24.01, Last updated, Version 3)
XX
DE   Sola3 DNA transposons from Aedes aegypti.
XX
KW   Sola3; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA TSD; Sola3-1_AA; Sola3-1N1_AA.
XX
NM   Sola3-1N1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3041
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
CC   An inserted FEILAI-1B_AAe (~96% identical to the consensus) is
CC   screened out.
XX
SQ   Sequence 3041 BP; 1070 A; 523 C; 472 G; 975 T; 1 other;
     gagccagttc gcgagagccg caaccccttc ttgtattgat gttctccgat caggctgaaa        60
     ttttcaggga ttgttctact atataaaaga tgatgttttg caaaatttta gatttttata       120
     ttagggggaa gtgggacaaa atgaccccca atgatttcat gtcactaaac atgcaaaatc       180
     acaaaaactg atataactat agtaaaagtg cacggattat gttgaaattt ggcatgaata       240
     ctctacgtta tatgaacttt gagattggca tggtatatgg attttgaaag tacttcaaat       300
     cgagaaaaat gagtttttca taaaaaattt agtgattttc aaatcgattt ttttcttacc       360
     aaccgaacta ggtcaaaaaa ctaaatatga cgttttgtag ggtaactcat gggctttcat       420
     ttgaggtgta atccagatat gccgtttcaa aaattttcga aaaaaatttt tttttcgggg       480
     tagtgtttga acttgagcca ttttgcgagt accgcaaccg ccttgtctag agaggttgta       540
     ttgatgttct ccgatcgagc tgaaatttac aggagttgtt ttcctatata aaagaatata       600
     ttccgcaaaa tttcagattt ttatattagg gagaagtggt acaaaataac cactaatgat       660
     ttaatatata aaaacataca aaatcaatta aagtgctata atagcgatag taaaaataaa       720
     cgaatttgca tgaaatttgg catgtttaat taacgttata tgaacttcaa aatgaacatg       780
     gtatttggat tagaaatgtg tttcaaattg ataaaaaaaa tctgttttat tttttttttt       840
     aataaaatta gttttttttt tcaaatcgac ttatattttt gtcaatcgaa ctagttcaaa       900
     caactaaata tgaagttttg tagggaaact caggagcttt cattcgcggt gtaccgtagt       960
     gaatcaaaat tcggacggta ccaatatccg gacactctga taatatttac caataaaatg      1020
     ctaaattgac aacatttata caactatatt gaatgaaaaa atagctgttt ttgtagtgta      1080
     gtgattgtaa cataataata cacaaagtta tagtttaaaa gtttagtgac accacattga      1140
     aaaaatatgc tgtaaatatg gtttaaaaaa gtaaaaagag gctgtccgga attggagccc      1200
     aatgtttttg aatctggaca ttgtattgga attgtatgtt tcgatgccgt aagtacacaa      1260
     ttttcaaata aaactggaat aatactttga acatcatcaa aacatgagta atatgtaata      1320
     agaacaatac tgtgcgtcgt tcattgaacc aatcagtgat gattgcartt taaaccacca      1380
     acatgtctgt ccaaacaact aaatcacaaa cattgcttac acaatatgtg ttcattacta      1440
     ttcaaaaaga aacccatttg gcagaactac actttttata agggaaaagt gggtcaaaat      1500
     gacccccaat atttttgtgt cggaaaacac acaaaatcac aagaactact gtaccgttta      1560
     aacggattgt actgaaaaat atgttttttt ttttgtaaaa aacacacaat tttccgtgga      1620
     aatatgcaat ttttaacaat cttcgtctct cttttactct ttcgagaaat ttgcaaacat      1680
     caaggctagt aaaagtcaaa attccattca agatataaac agtacagtgt ctcatagcag      1740
     ccatatgtgc agtcagtcta aactaagcta aactcaatta tttacaaatt gatctctagc      1800
     aaacatacca tcatacacac atacatgtga ccctcctaat caaacccatc aaacattatc      1860
     caaattaaaa aaaaatgcgg tagttgatac ccatccaaac agcgtgagaa gaaacaacgc      1920
     ttactactga accgccgaag ctgctaacga aaacattggt gcaatgactt attgttatcc      1980
     acatcatcac ttttgcaaga aagtgacatt tctttcagat acggcagcgg caacacggta      2040
     tgatataatc ggtattacaa ctaccgacaa gaggcctcca tacgctgctc ataccgcccg      2100
     gattttgatt taccacggta caccgcgaat gaaagccctt gagttgtcct acaaaacttc      2160
     aacctagttc ggttgaccaa aaataagtcg atttgaaaaa aaaaactaat tttacaaaat      2220
     aacaggtttt tctcgatttg aaacattttt ttatccaaaa tgatcattca tataacgtaa      2280
     agtaaacatg ccaaatttca tacaaattcg tgcattttta ctatcgctat tatagcagtt      2340
     taattaattt tgtatttttt tatatattaa atcattagtg gttattttgt accacttctc      2400
     cctaatataa aaatctgaaa ttttgcgaaa tatcttcttt tatataggaa aacaactcct      2460
     gtaaatttca gctcgatcgg agaacatcaa tacaacctct ctagacaagg cggttgcggt      2520
     actcgcaaaa tggctcaagt ccaaacacta ccccgaaaaa aaattttttt tcgaaaattt      2580
     ttgaaacggc atatctagat tacacctcaa atgaaagccc atgagttacc ctacaaaacg      2640
     tcatatttag ttttttgacc tagttcggtt ggtaagaaaa aaatcgattt gaaaatcact      2700
     aaatttttta tgaaaaactc atttttctcg atttgaagta ctttcaaaat ccatatacca      2760
     tgccaatctc aaagtttata taacgtagag tattcatgcc aaatttcaac ataatccgtg      2820
     cacttttact atagttatat cagtttttgt gattttgcat gtttagtgac atgaaatcat      2880
     tgggggtcat tttgtcccac ttccccctaa tataaaaatc taatattttg caaaacatca      2940
     tcttttatat agaagaacaa tccctgaaaa tttcagcctg atcggagaac atcaatacaa      3000
     cttcccttgg aaagggggtt gcggttctcg cgaactggct c                          3041
//
ID   Sola3-1_AA  repbase;    DNA;    INV; 6027 BP.
XX
AC   AAGE02019464.1;
XX
DT   28-JAN-2009 (Rel. 14.02, Created)
DT   19-FEB-2015 (Rel. 20.02, Last updated, Version 2)
XX
DE   Sola3 DNA transposons from Aedes aegypti.
XX
KW   Sola3; Sola; DNA transposon; Transposable Element; TTAA TSD;
KW   Sola3-1_AA.
XX
NM   Sola3-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6027
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Molecular Biology and Evolution 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1279..3297,3317..3601,3605..4330)
FT                 /product="Sola3-1_AA_1p"
FT                 /translation="MAEMAKCALENISECGQYLPKSDDKYYSAEELASTKV
FT                 IDLFPKLANDKFFFDYSEKWLIEHRSGIKLQDKDSICAKHRYSFGEKWKPL
FT                 KRCYHPDHLQNPTSAKRMKVLGVRPCKSHHFKYISKHDPTFPLFAPLCRLH
FT                 EKTEDISVKADETDTPENDEVSFDQPSDLKLLNSVLSLLGVPNIRATIDTS
FT                 IENLSKKFLDSKRQKIEFALEKIKNLFVTIAPGQEEKYKKLLSSHEDDNST
FT                 RQGELKAYRKLYDAETSDNRKLRVLSNIDKERFSRREIEDQLGCSRSSTSK
FT                 ARKMQTSNESSNEANNSVSKQRLDIEKCKHFLLWLYESGSLGDLAYGTTMV
FT                 RYSSGYKMHIPKPILTGLRSHTIANYIDFCHNTNTDALSRTSLFKILNLLK
FT                 PSQRHSLAGLDNHMVAGTEGFEVLKRLCEKFFEDDKGILSDLTAIQRYIKG
FT                 PFANNCSKNSKTASHCTVFGLSDTKNDHFAQKCDHDHSQVCTSCAKIFQLF
FT                 ETISDKISIENDQNVKAEMMYDYENSKKAVLKWQQHILRHVQQNQAKLDAF
FT                 SDIQTDHTKAVWIRDWGQKVLPMKYREEQSSYFGKKGMSIHFDVFIFIDVE
FT                 TKKFNKAVFVTLLDNCKQNAVETLALIPGILAKFRSLYPDICSLFIRINNA
FT                 GCYSGKQILHNCMHVLCEGVFVCVLIISFSQFMLLANGVAESTFQLCKEAG
FT                 IKLLRLDHNEPQKGKDQCDREAAVCKSYIRAYVNASNNTTTAADLKKGIMF
FT                 QGGPRNTYVGVLKIRDSMSGVKNREGVQAIHSISFEFPFMTFWRYYDIGTG
FT                 VKHRIQNINFNFNVDVISSYDKTANSQLGLGTPSMKTQILDASKQSSIPKN
FT                 STTDAIYNFVSNLITTNDTRLQGQNDSQTAEENCEVVSEEFCTYFSKGWGV
FT                 GSRENVRFDVRVKQFMLELFSLGEKTGKKISPEDAHRAMRSKLDRITGIKE
FT                 FQPKSYISVEQIKSLFARFSTLHRQNKLVLCDVSEDSFLNVEEHHEYKLVI
FT                 STI*"
XX
SQ   Sequence 6027 BP; 2036 A; 1060 C; 1095 G; 1836 T; 0 other;
     gagccagttc gcgagagccg caaccccatc ttgtatcgat gttctccgat caggctgaaa        60
     ttttcagggt ttgttcttct acataataga atatatttcg caaaatttca gaattttatt       120
     ttaggggaaa gtggggcaaa aaaatcccca atgatttcat gtcgcaaaac atgccaaatc       180
     aataaaaatg caataactac agtaaaaatg ctcggattta tttgaaattt ggcatgatta       240
     ctctttgtta tatcatctta aatatgggca taaaatttgg tttaaaaaaa aattctttat       300
     cgagaaaaac ctgtttttca ttaaaaaaat gatgattttc aaatcatttt ttttcgtgcc       360
     aaccgaacta ggtcaaaaaa ccaaatatga cgttttgtag gccgtctcaa gggctttcat       420
     ttgagatgtg atctaaagtt gccgtttcaa aaacttccga aaattttttt ttttcggggt       480
     ggtgttttat tttaacccgc tagtccagtc cgcgagaatc gcaatatcat attgtaccga       540
     ttttctccga tcaggctgaa attttcaagg tttgttcttc taccaaatag aagatatttc       600
     acaaaatttc agatttccac attaggggaa agtgaggcaa aaatatccct aacgatttcg       660
     tatcactata gtaaaaatgc tcggatgttg tttaaatttg gcatgattac tctacaaaat       720
     ataataaaat aagaataata ataagataat aatagtatat tataacaaaa ggaataataa       780
     taacaacaat aataataata atatgatgat aataataata attattatta taacgataat       840
     aatatatcag taaaagtcaa aatcccatac aaagtcacaa cagtgcatta tatgtgcaat       900
     cagtctaaac gaagctaaac tcaattattc acaaaatgat cgctaggaaa cataccatca       960
     ataaaacaca ctcacacatg ggactatccg agtcaaactc atctaaacat aggcttggac      1020
     caactttcaa aagaatgcgg gagttggtat ccaaccaatt agcgtgagaa gatacaacgc      1080
     ttacttacaa cttaactaat aaacaaattg gtgcaatgct ctattttttg ctcgggagtg      1140
     acatttgttt cggatatggc agcggcaaca tggtatgata caatcggtat cacaactact      1200
     aacaaggccg ctaagtaagc tgtcagtttg caacaaatct tcgtctgtga attagtgttc      1260
     aatttcaatt tgattaaaat ggccgaaatg gcaaagtgcg cgttggaaaa tatttctgag      1320
     tgtggtcaat atttgcccaa atcagatgac aaatattaca gtgctgaaga gttagcttca      1380
     accaaagtaa tcgatctgtt tcctaaactc gcaaatgata agtttttctt tgattactcc      1440
     gaaaaatggt tgattgagca tcgttccggt attaagcttc aagacaagga ctccatatgc      1500
     gcgaagcaca ggtacagttt cggggagaaa tggaagccat tgaaaagatg ttaccacccg      1560
     gatcatttgc aaaatccaac atctgcaaag agaatgaagg ttttgggtgt acgcccgtgt      1620
     aaatcccatc actttaaata tataagtaag catgacccga cttttcctct ttttgcccca      1680
     ctttgtcggc tacacgagaa aacagaagat atttctgtaa aggccgatga aacagacact      1740
     cccgagaatg atgaagtgtc ttttgatcag ccatctgatc tgaagttatt gaactccgtt      1800
     cttagcctgc tgggtgttcc aaacataagg gctaccatcg acacttccat tgaaaatttg      1860
     tcgaagaagt ttctagattc taagcgacaa aagatcgagt ttgccctcga aaagataaag      1920
     aacctgtttg taacaattgc ccctggacag gaagaaaaat ataaaaagct tctttcttcc      1980
     catgaagatg ataacagtac caggcagggt gagctgaaag cgtatcgcaa attatacgat      2040
     gcagaaacgt ctgataatcg gaaattaaga gtactttcaa acattgataa ggaaagattc      2100
     tcacgtcgtg aaatcgagga tcagttgggc tgctcacgat ctagtacttc aaaagctcgt      2160
     aaaatgcaaa caagcaatga gtcgtctaat gaagccaata atagcgtatc aaaacagcgt      2220
     ctagacatcg aaaaatgcaa acatttcctg ctttggctgt atgaaagtgg ctccttgggt      2280
     gatctggcct acggaacaac catggttcgt tatagttctg ggtacaaaat gcacatcccg      2340
     aaacctatat tgactggtct tagaagtcac acgattgcca attatatcga tttttgccat      2400
     aatacaaaca ctgacgcatt gagtcgcact agtttgttca aaattttgaa cttactgaaa      2460
     ccatctcaaa gacacagcct tgctggtctt gataaccata tggtagctgg aacagagggc      2520
     tttgaagttc taaaacgctt atgcgaaaaa tttttcgaag atgataaagg cattctatcg      2580
     gatctaacag ctattcaacg gtacataaaa ggtccatttg ctaacaactg cagcaaaaac      2640
     tcaaagacag cgagtcattg tacggtattc gggttatctg atacgaaaaa cgatcatttt      2700
     gctcagaaat gtgatcatga tcattctcaa gtgtgtactt cttgtgctaa aatattccaa      2760
     ctgtttgaaa ccatatcgga taaaataagt attgaaaatg atcagaacgt gaaagcggaa      2820
     atgatgtatg attacgaaaa ttccaaaaag gctgttttga aatggcagca acacatcttg      2880
     agacacgttc agcaaaacca agccaaacta gatgcatttt ccgatattca gacagaccat      2940
     accaaagctg tatggattag agattgggga caaaaagtgc taccaatgaa ataccgtgaa      3000
     gagcaatcgt catactttgg caaaaaaggg atgagtatac attttgatgt attcattttc      3060
     atcgacgtgg aaacgaaaaa gttcaacaag gcagtttttg tgacgcttct ggacaattgc      3120
     aagcaaaatg ctgtagaaac tctggcattg attcctggaa tactagctaa atttcgtagt      3180
     ttgtatccag acatttgttc gctttttatt agaataaaca atgctggttg ttattcaggt      3240
     aagcaaatat tgcataattg tatgcatgtg ttatgtgagg gcgtttttgt ttgtgtatga      3300
     atgcaaaacc atttgactta taataagttt ttcacaattc atgttactag ccaatggagt      3360
     agctgaatcg acctttcagt tatgtaaaga agcaggaatc aaacttctgc ggttagatca      3420
     caatgaacca cagaaaggaa aagaccaatg cgatagagag gcagccgttt gcaaatccta      3480
     catccgggca tacgtgaatg cttctaacaa tactacaact gcagcagacc tgaagaaggg      3540
     gattatgttc cagggaggac cccggaatac atatgttgga gtactgaaaa tccgggatag      3600
     ttaaatgtca ggagtgaaga atagagaagg cgtccaggct atccactcca tctcattcga      3660
     attcccattt atgacctttt ggcgatatta cgatattgga actggcgtca agcatagaat      3720
     ccaaaacatc aattttaatt ttaatgttga tgttatttca tcttacgata aaacagccaa      3780
     ctctcaacta ggactcggaa ctccttcgat gaaaacgcaa attctagatg cttctaagca      3840
     atcaagtatt ccgaagaatt caacaactga tgctatttat aactttgtat caaatttgat      3900
     aacgacaaat gatacaagat tgcaaggtca aaatgactca caaacagcag aggagaactg      3960
     tgaagttgtt tcagaagaat tttgtacata tttcagcaaa ggttggggag ttggctctag      4020
     agaaaatgtt cgcttcgatg tgcgtgtaaa gcaattcatg ctggaactgt tttcccttgg      4080
     cgaaaaaacg ggaaagaaaa tttctccgga agatgctcat agggcaatga gaagtaagct      4140
     tgaccggatt actggaatca aagagttcca acctaagtct tacatttccg tggagcaaat      4200
     aaaatcatta tttgcgagat tttcaacgct tcacaggcag aacaagctcg tgttatgtga      4260
     cgtaagcgag gacagttttt tgaatgttga agaacatcat gaatacaaat tggtaatttc      4320
     cactatttag ttttattttt attttatttt attttttttt ttcgtttatg tgttacagat      4380
     ggagttgcag caagaaggtg aagactttct agaaaatgcg ctagagaaaa tcaacgaaga      4440
     gtacgatgat tggtctgacg atgacaatga atcgaataaa taaaccgtaa ccatagcatt      4500
     tagaagttat ttttctaatt ctacaataaa ttagtttttc agatttctct gtgaaatacg      4560
     aaagatatat taaaagtttt aaaagtaaat ttatttgtat tacttcataa gtaaattcat      4620
     gtattctttg aagcattttt gtaagtgtat ctctctagaa aaaaaaaata taagggatta      4680
     tttttcccta cttctccctt actttcttta tgaattgttt attattgttc aattcattat      4740
     ttattcattg tttttttttt ttgcgggact tatagcattt atttttgtat tctcaacatt      4800
     catttgtttg gagccatttt accccacttt ccctttacgc aaaaacatag aaacaatcaa      4860
     aaagtattgt tatatataga agaacaaacc ctgattaaaa acaaacacca cccaaaaaaa      4920
     aatcatattt tttaaggcta tgcagcccgt tattcgtttt ggcaacaatg atgacttttc      4980
     aacttgcatt tcaaagtgag aaaactcagt cttgatagtt tatattgact tgaaaaagta      5040
     tcactgtacg cgcttacatg cataaagtat gctgatactt tttcagctgt gtcagtgcaa      5100
     aaccaactga ttttctttga ttcggaatcg tgagatgaat aagcaacaat catcaacgac      5160
     gcgtacaaat ttcaatgacg gcctacttcg ccttaaacgg catctgtaga tcacatcaga      5220
     ttctcaaatg aaagcccttg agtcgaccta caaaacgtca tatctggttt tttgactgag      5280
     ttcggttagt tataaccgat ttgaaaatca tcatttattt tttttataaa aattggcatg      5340
     tatttggcat gtttcgcgat atgaaatctt tggggatttt tttgccccac tttcccctta      5400
     tataaaattc tgaaattctg cgaaatatat tcttttatgt agaaaaacaa actataaaaa      5460
     aatcagcccg atcgaagaac atcgatgcaa gatggggacg tggctctcac gaactggctt      5520
     ttaaaatcaa acaccacccc gaaaaaaaaa aaattttcgg aagtttttga aacggcaact      5580
     ttagatcaca tctcaaatga aagcccttga gacggcctac aaaacgtcat atttggtttt      5640
     ttgacctagt tcggttggca cgaaaaaaat gatttgaaaa tcatcatttt tttttaatga      5700
     aaaacaggtt tttctcgatt aagaattttt tttaaaccaa attttatgct catatttaag      5760
     atgatataac aatgagtaat catgccaaat ttcaaataaa tccgagcatt tttactacag      5820
     ttatagcagt tttattgatt tgacatgttt tgcgacacga aatctttggg gatatttttg      5880
     ccccactttc ccctaaaata aaattctgaa attttgcgaa atatattctt ttatgtagaa      5940
     gaactaaccc tgaaaatttc agcccgatcg gagaacatca atacaacatc ctttggaaag      6000
     ggggttgcgg ttctcgcgaa ctggctc                                          6027
//
ID   Spectre     repbase;    DNA;    INV; 5026 BP.
XX
AC   .
XX
DT   19-FEB-2019 (Rel. 24.09, Created)
DT   19-FEB-2019 (Rel. 24.09, Last updated, Version 1)
XX
DE   Mutator/MuDR family from arthropod species, especially aphid
DE   genomes.
XX
KW   MuDR; DNA transposon; Transposable Element; Myzus persicae;
KW   aphids; arthropods; mutator; MULE; Spectre.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-5026
RA   Dupeyron M., Bass C., Singh K. S. and Hayward A.;
RT   "Evolution of Mutator transposable elements across eukaryotic
RT   diversity.";
RL   Direct Submission to Repbase Update (20-FEB-2019).
XX
CC   This sequence contains 74 bp TIRs and is surrounded by 8 bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2005..2350,2478..2807,2875..4640)
FT                 /product="Spectre_1p"
FT                 /translation="MSSSAPEIKCSICDTKFTQKKNLYAHLRNIHGSDSLN
FT                 VNNFICTVCEKTFKVQKTLDTHIKKYHKNGDKNRETRIICPYDECNEPLFK
FT                 FSKLRIHLFEKHNITIEVKELSFSTIAEMENGDRAKKTFSKFILDRAAIKL
FT                 SNGCTRSYYYCHRSFNNRKTKNEIEKARETKAIGTNKIDGTCPSMIKLTMQ
FT                 ECEETVQIEFWENHYGHELEIGRIGLDKDIKLNIAAKLKEGVTFEHIIDLI
FT                 RDAEVTDDTHRRSLLLERKDLQNISRDFNINYATKRHTNDAISIKLWVEEM
FT                 KMLETQCPVLYYKSQDENDWNGEEGILSKHDFVLILMTKFQQETLQKFGRD
FT                 KICVDGTHGTNAYDIQLYTVVTVDEFGSGCPVAFCLSNRSDELIFQLFFEK
FT                 IKFNVGVIDCKVFMTDDAPAFYNAWIAIMGPVEHRLLCTWHVDKNWRQNLS
FT                 KISGGSEKKSIVYKTLRILLQTTSIEEFKNNLQNVIRDLKQDKDTYTFGVY
FT                 FKKYYSKRPECWAYCYRLRLGINTNMYLESFHKVLKHIYLEGKRVKRLDKT
FT                 INALIKYSRDSLYKRLIKLSKNIPTEKVQRVRQSHNSSKLIKLEQIQIVEN
FT                 KKVYIIKSLSNPSQHHYIIKTDETCTQSSCLKCKKCDICIHTFHCSCIDNV
FT                 IKANICKHIHACAREFISLDGNTENTVFQDSNMKEQKTLMDMVATSSHHKA
FT                 HKNQTIISQTQMILGLSSTNEYSNENLQKIEKKLADVLAIMNEGGQTHLKT
FT                 VEEVNVQRKIDPQLRLYSTKKKSSKTSIAKPSVNEVNAIISGLKDDNNETI
FT                 NVHNVFDHSYS*"
XX
SQ   Sequence 5026 BP; 1914 A; 671 C; 746 G; 1695 T; 0 other;
     acgagcgtct cattgcagct tggcaaattg gctgctgcgc gcgcagctcc ccttatcata        60
     ccattatcac cgttactttc aaatattgta aatatatcaa gaatcgctat agcccccccc       120
     ggccccaaaa aactaatgat tttactaaca tgatacacat aatacattgt aatttcgaat       180
     tttcgaaaga aatatcactt tatgcgcatt atttattaat gaaataaaag atgctgggat       240
     gtttagtatc caatgtgatg aagctcggta atgaaaaatt atctacctca tataaaaaag       300
     ttttttgttt ataacatatg tttataatat tctagatgcc accacgaaga acaactggta       360
     atatgtattc ggtatccaaa aaacttgagc gtatgtgaac gatttgttga atttgtaaac       420
     gtttctaaaa aacaagatgc agatgcttta gttaaagttt tacttaattt tatccataaa       480
     tcaaatttga gtgaaattcc tataatagga gtcctatgac ggtgctgctg ttatgtcggg       540
     ttcagagggt ggggttcaaa gtaaactgag gcaaaaccat ccaccagcat caaaagctat       600
     atatatccat tgtatggcac ataagttgaa ccttgtaata gttgatatgt gcaaaaattt       660
     aaaggtatac attttgaaat tttttatttt acctatattc gattaatttg tttaataatt       720
     aataattttt taggatgcta gaagtttgtt taatggatta caggctctgt atgttcattt       780
     ttcctatcca actacttata gttattagtt atacttatta gttgttgaaa tagcaattac       840
     attgcccgta agttcgtcca cttctgagag gtcattttca acaatgcgaa gaataaacac       900
     ctacttaaga tctactatgt cccaaaatcg gttcagcaat ttgggtattc ttaatattga       960
     gaaagatatt gttgttgacg tggaagagat tctaaataat tttagtaaaa cctaaaggag      1020
     aattaagtta ttgtaattag gtttactata agaataataa aaaaaaactg atgttaaaaa      1080
     ataataataa tgttgttaat atagttttta tattattatg tggatttgat ttttgatggt      1140
     atataatata taatatatat tatatgtacc tatatcttta tatttatttg taattcaaaa      1200
     atgtttaggt gttaattact tgtataaatg cttcattcag tagctagggc ttcagccccc      1260
     ccaaatctca aacgctattt gggcctatgt aatttaataa tattaaaaat aaaactttat      1320
     ataaaaacaa ccaaattata aacattcaaa tttatagtaa taggtatcta aaatttaaaa      1380
     atgtacaaat ttctactaag tttgaaatat tgattaattt ataatatgtc aataaaaatt      1440
     ataaactcat aaatgaatag ttgcaattct attaaatgct atatgaataa taaactaata      1500
     aacactatta ttatagttat ttttatattg ctttagtaaa cctagtacat tttataacat      1560
     taacatagtt aatatacaaa ttttagttta ggttattatt atacaaatta gttaactgaa      1620
     tcatacctta taaagttata cacttatacc tatatttaaa tggctaaata aatatttaaa      1680
     agatgtaatt tgttttttat aaataataca tttcttaaat aggaaatatt cctagttact      1740
     tgtgtgtaca tatttagata tatggtgttt tattcaagtc cagatactat attattgatt      1800
     gatatacaaa atatttgaaa atttaaaata atacataata acaagaaatt tccaagtcat      1860
     aaatcttcta aaaataagtt attaatctca gaccaatgtt tctgacacaa tcatttttca      1920
     taatcttcat actgtgttaa tacttattgt gattttcatt aagctagtat tttatttttg      1980
     tttgtatctt ggcatctgag catcatgtca tctagtgcac ctgaaattaa atgttcaatt      2040
     tgtgatacaa agtttacaca aaaaaaaaat ctttatgctc acttaaggaa tatacacggt      2100
     agtgattctt taaatgtaaa taattttatt tgcacagttt gtgagaaaac atttaaagtt      2160
     cagaaaactt tagataccca tataaaaaaa tatcataaaa atggcgataa aaatagagaa      2220
     acaagaataa tttgtcctta tgatgagtgt aacgaacctt tgtttaaatt ttcaaaatta      2280
     aggattcacc tgtttgaaaa acataacatt actatagaag taaaagaact aagtttttcg      2340
     accattgcag gtaatacttt tatgaacaat aataaattaa tgatatcata ttaatattta      2400
     atactaggta ttttaaattt tgttgcgcaa taacatgttt aggtatataa tatttatttt      2460
     ttaatataga atttgagaaa tggaaaacgg agacagagca aaaaaaacat tttcgaagtt      2520
     tatacttgat agagctgcaa taaaattaag taacggctgt actaggtcat attattattg      2580
     ccatcgatca tttaacaatc gaaaaaccaa aaatgaaatt gagaaagcaa gagagacaaa      2640
     agctataggg actaataaaa tagatggaac atgtccatct atgatcaaac taacaatgca      2700
     agaatgtgaa gagacagtac aaattgaatt ttgggaaaac cattatggcc atgaactaga      2760
     aattggaaga attggattag acaaagacat aaagttaaat attgcaggta attataataa      2820
     ttattacctc ttttcagttt tcttggaatt ttaaatattt aaaatttttt ctagctaaat      2880
     tgaaggaagg agttaccttt gaacacatca tagatttgat tcgtgatgct gaagtaactg      2940
     atgacacaca tagacgatct cttcttttgg aacggaaaga tctacagaat atttcacgtg      3000
     atttcaatat taactacgct actaagcggc atacaaatga tgcaatcagt ataaaattat      3060
     gggtggaaga aatgaaaatg ctagaaacac aatgtccagt tttatattac aagagtcagg      3120
     atgagaatga ttggaacgga gaggaaggaa tcttgagtaa gcatgatttt gtattaattt      3180
     taatgacaaa gttccaacaa gaaacactac aaaaatttgg ccgtgataaa atttgtgtgg      3240
     atggtactca tggaactaat gcatatgaca ttcagttgta tactgttgtc accgtcgatg      3300
     aatttggatc cggttgccca gttgcgtttt gtttatcaaa tcgatccgat gagctaattt      3360
     ttcaattatt ttttgaaaaa atcaaattca atgtaggagt tattgactgt aaagttttta      3420
     tgacagacga tgctcctgca ttttataatg cttggattgc tataatggga ccggttgaac      3480
     atagacttct gtgtacttgg cacgtcgata aaaactggag acagaattta tctaagatca      3540
     gtggtggatc agagaaaaaa tcaattgttt ataaaacact gcgaatatta ttacaaacca      3600
     catccattga agaatttaaa aacaatctcc aaaatgtcat aagagattta aaacaagaca      3660
     aagacaccta tacatttggg gtttatttca aaaaatatta ctcaaaacga ccagaatgtt      3720
     gggcttattg ctatcgacta agacttggga ttaatacaaa tatgtacttg gaatcatttc      3780
     ataaagtatt aaaacacata tatttggaag gaaagagagt aaaacgtttg gacaaaacaa      3840
     ttaatgctct gattaaatat tccagagata gtctatacaa acgtttgatt aagttgtcaa      3900
     aaaatatccc tactgaaaaa gtccaaagag tacgtcaaag tcataactca agtaaattaa      3960
     ttaaactaga acaaatacaa attgtggaaa acaaaaaagt atatattatc aaatcattat      4020
     ccaatccctc acagcatcac tatattataa aaactgatga aacatgtaca cagtcatcat      4080
     gtttgaaatg caaaaagtgt gatatttgca ttcacacatt tcattgctct tgtattgata      4140
     atgttattaa agcaaatatt tgtaaacaca tacatgcttg tgctcgcgag tttataagtt      4200
     tagatggcaa tactgaaaac actgtttttc aagactcaaa tatgaaagag caaaaaacgt      4260
     taatggatat ggttgcaact tctagtcacc ataaagctca caaaaatcaa acaatcataa      4320
     gccaaacaca aatgattttg ggtctgagtt caacaaatga atatagtaat gaaaacttac      4380
     aaaaaattga aaaaaagttg gcagacgttt tggcaatcat gaatgaagga ggacaaactc      4440
     acttaaaaac agttgaagaa gtcaatgttc aaaggaaaat agatccacag cttcggcttt      4500
     attcaacaaa aaagaaatcc agcaaaacat caatagcaaa gccttctgta aatgaagtaa      4560
     atgcaattat ttctggactt aaagatgaca ataatgagac tataaatgtt cataatgtat      4620
     ttgatcattc atattcttaa aagtactaaa caatattact taaaaactta ccaattatta      4680
     ctttgttatt aatatttaat ttgattgatc atttttgttc tgatattgac atacttatat      4740
     aaagttgtac atttttacta ggtacattag ttcatattca tattgtttgt tacttggata      4800
     cacaaatatt atatttaaat atacaataaa ttattaaact atacaagtac tagtcattat      4860
     tactaattac tttattatta aataatatca gtttataaca tagacataat ataaaacaat      4920
     tgttctatat atctatggtt tataatggtg ataacggtaa taatggtatg ataaggggag      4980
     ctgcgcgcgc agcagccaat ttgccaagct gcaatgagac gctcgt                     5026
//
ID   SPOCK_DMi   repbase;    DNA;    INV; 4952 BP.
XX
AC   AY144571;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUN-2011 (Rel. 16.06, Last updated, Version 2)
XX
DE   Drosophila miranda non-LTR retrotransposon spock, complete
DE   sequence.
XX
KW   Outcast; Non-LTR Retrotransposon; Transposable Element;
KW   SPOCK_DMi.
XX
NM   SPOCK_DMi.
XX
OS   Drosophila miranda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Bachtrog D.;
RT   "Accumulation of Spock and Worf, Two Novel Non-LTR
RT   Retrotransposons, on the Neo-Y Chromosome of Drosophila
RT   miranda.";
RL   Mol. Biol. Evol 20(2), 173-181 (2003).
XX
DR   Genbank; AY144571; Positions       1    4952.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1757..2974,3064..3735,3735..4574)
FT                 /product="SPOCK_DMi_1p"
FT                 /translation="ASDCPRDGSWFSKHPTMKILQLNIQSLTHNNNKQLLS
FT                 MFLDQNAIDIAILSEIWVLNNADCSILDYNFFCMPREDGYGGVGIYVRKNI
FT                 QFSILKIENDLEILGIKTLNLKSNFNIFSIYAPPSTTVSQFKSGTKKFLEF
FT                 AASLDIPSIVGGDFNARSSIWGSPICDRNGRSIENSTREAGFICLNDGSPT
FT                 FSRSPSQFSVLDLSFSNYRNGTINWQVLKTKITNSNHFPIVLSVQGLNAPL
FT                 QGKKILHNRIARILGASDFSNLEELNEKVKSLTLKNTVTFPRKNKYVAKKW
FT                 WNEETEKLFRVRNACRQKFYLTKKLADARATLEADKNLQNHVKNLRKRNFS
FT                 KFIEEVSSSPSMWSRVKNIKKYGQIKNVGNKWTNEDDKNFLNMVKVTPSTS
FT                 NSRPPKKIPAPLWHLVQDASKATKWEKQDIFEIINKVWLSGVIPEVWRRIK
FT                 VVPIPKKNADPTSFQNHRPICLINTLFKSIEGLIKLKLDEHIANCDQLPVR
FT                 SYALRRNRSTALCINDLINKVLALKARGCQVVAACWISSFLNRRILIKGKS
FT                 EVEVNRGVSQGSCLSPTLFNLYTAELHDINSHNCLLFQYADDFFIVCFHKD
FT                 VSIAKGVLEDSIDKFEEKCNRLNLSFNPVKSKVIYFNNRRAALNISHQGVE
FT                 IRQVEQIKYLGRTISANNSASGHIDLAISESNRNCAFLSGCHYGISPKRGL
FT                 IFYKAFVRSRLEYACSSFCNLSKSALAKIKSHCNHHLRKSLGLIICTLVPI
FT                 IYHMAGELPPDYRMRFLAAKELVKVFAFNLPASETVSANRDLNTGYAKAYR
FT                 EFGSIIDRVEVFENTASFCTKISSDLEFFKGSAPNKHAIDQAGIMLLLGEK
FT                 KDQLTKGGFEIYYTDGSVADGHSSAAFLHDRTGFLDSYYTHKTLSSLSAEL
FT                 LAIEKA"
XX
SQ   Sequence 4952 BP; 1554 A; 1113 C; 1113 G; 1172 T; 0 other;
     caaaaaacgt tgttcaacac tggtatggcg cgtacctaaa attgtttgcg gaaggaaaaa        60
     attaacatat ttcaagacgt tcgctgatag ttttaatcaa aaagactttt tccgaagctt       120
     ctgggggtgc ctcacacgcc tacgaagacg gcgcgaagaa attcccaaag cttaatcaat       180
     taagtcgaaa aacctggaat ttactgcatg gcgtcccgga ataactctta aaacggctct       240
     tggaactccg tctggaccct gagaagcatg gcaagcatag gaaagacaag gatggccacg       300
     gagaaggcga cgggagttaa aatttgcatg gaaacgctga aaaaaaggga aggagaagct       360
     aaatccgcca tgcgggtagg agtaaagatg gcggcaaaaa cggctccgca gcttttggct       420
     tctaaactgc tgtgcaagaa accaaacttg tcgacgaacg tgtcgacaaa catgtccacg       480
     aacacgacaa caagcatgac atcaaacatt tctacgacga aagagagaga gaagactgac       540
     gcggtttggt ggcttccgtg agtacgaaaa acggaagtaa ccgcaaaatc atcgttaaca       600
     agtattatga ggggcataaa ggcccataca ttgtttgtat cgacaaaatg agtgcgaata       660
     atgccagaat tgctataaac cagtttgatc tatccgatct gctgctgaaa cagggcatta       720
     gcgatatcga ggaggttgct agaatgggct atggcaggtg caagattgtg tgcgggtcgg       780
     cgggaatatg caaacgggct agtggaaaag agtgttttcg ctgctcaagg gtactcaacc       840
     cgaatcttta ggcacttcgt ccaaaaagca gggttaattt ttgggttccc cgtgcactac       900
     tcggaggaac agctagcgga gcttgtaacc tcggatatcc caattgagga gatagttcgg       960
     attacgcgaa gggatagagc atcgggggaa cgtgtaccta ctggcagggt gaaactctgg      1020
     ttcagaggag agcagttacc aaccaaaatc aattttctat attctaaagt agaagtgaaa      1080
     ccttttgttc agcttattca atgtttcagg tgttttaggt ttggccatct ggcgcaacat      1140
     tgcaagagtg gagcgaaatg tttcaaatgc ggacaagatc gcagcaaaga tattatctgc      1200
     tcagggctgg tctgtgctaa ctgcaagggg gaacatgctg ccacccaccc gcagtgtgag      1260
     gccaggaaaa aagcgtacgc cattcaaaag tgtatgacac tggaaaacct aactagagct      1320
     gaggtcaagg ctagatatcc gatccttttt gatagaactt cccccaacct aagggatcaa      1380
     ggggaatttc ctagacccag ttggcaatct aaccgctctt agagtccgcc agggaaattc      1440
     attctgtcac ctctttcgcg gaagtgacca aatccaatag ggttgccgcc cggaacgcag      1500
     aggcggccaa ggcagcagcc aacatggcag agtggaagaa ctcaataaac tcagactgcg      1560
     tccaaatgag cgagaaattt gttagatctt catccgtggc atcttctctg gcccaggata      1620
     agctaaacgc actaggagcc aaactcacag cgttcctgat tgatccaaac aacatcatta      1680
     aaggggattc tttagcaaat aaatttatta aggaaattag agaatttgtc aatgcttcca      1740
     acgcagaact agataggcgt cagattgccc aagggatggc agttggttct caaaacatcc      1800
     aacaatgaag attcttcagc taaatattca aagtctgaca cacaacaaca acaaacagct      1860
     actctcaatg ttcctagacc agaacgcaat agatattgcc atcctctcag agatttgggt      1920
     gttgaacaac gcggactgca gcattttaga ctataacttt ttctgcatgc ccagagagga      1980
     cggctacggc ggggttggca tctacgtcag gaaaaacatt caattcagca ttttaaaaat      2040
     agagaacgac ttggaaattt taggaataaa aacattaaac ctcaagagca atttcaatat      2100
     ttttagcata tatgcaccgc catcaacaac agtttcacag tttaaatcgg gcacaaaaaa      2160
     gtttttggaa ttcgcggctt cgcttgacat accctcaata gtgggcgggg acttcaacgc      2220
     taggtcttct atctggggaa gtccgatctg tgatcgcaat ggtcgcagca ttgagaattc      2280
     cacccgggag gccggattta tctgcctaaa cgacggttcg ccaaccttct ccaggagccc      2340
     atctcaattc tccgttcttg acctttcttt ttcgaactac agaaatggaa ctattaactg      2400
     gcaagtcctc aaaacaaaaa ttacgaacag caaccacttc ccaattgtat tatcagtgca      2460
     aggcctaaat gcccccctcc aaggcaagaa gatccttcac aacagaatag cccggattct      2520
     gggtgcaagt gatttctcaa atctggagga gctcaatgaa aaagtgaaat ccctgacctt      2580
     aaaaaacacg gtcacattcc cacgcaagaa caagtacgtt gctaagaaat ggtggaacga      2640
     ggaaacggaa aaactttttc gcgtgagaaa cgcttgcagg caaaaattct acctcaccaa      2700
     aaaattggct gatgccagag caaccttaga agctgacaaa aatctacaaa atcacgtaaa      2760
     aaatcttcga aagcgcaact tttccaagtt tatagaagag gtctcctcat ctccctctat      2820
     gtggagcagg gtgaagaaca tcaaaaaata cggtcaaatc aaaaatgtag ggaacaaatg      2880
     gacgaacgaa gatgacaaaa actttctcaa tatggttaaa gtaaccccat ccacgtcaaa      2940
     cagtaggccc cctaagaaaa ttcctgcccc tttgtaagga ccagacgacc cggaacccct      3000
     ggaactggaa gaattcctgg ccttcctaaa aaccaggaac cccaattcgg ctagaggccc      3060
     tgatggcatc tcgttcagga tgcttcaaaa gctaccaagt gggaaaaaca agacattttt      3120
     gaaattataa ataaagtatg gctgagtggc gtcatccctg aagtctggcg caggataaaa      3180
     gtggtaccca tccccaagaa gaatgcagac cctacttcct tccaaaacca taggccgatt      3240
     tgtttgatta acacgctgtt taaatccata gaggggttga taaagttgaa gttggacgag      3300
     cacatagcaa actgtgacca gctgccggtc aggtcctatg ccttaaggag aaacaggtcc      3360
     acggctcttt gcatcaacga ccttatcaac aaagttctgg cgctgaaggc gaggggttgt      3420
     caggttgtcg cagcttgctg gatctccagc ttccttaaca gacgaattct cataaagggc      3480
     aaaagcgagg tagaggtgaa cagaggtgtt agccagggta gctgtctcag cccaaccctt      3540
     tttaaccttt acacagccga actacatgat attaacagtc ataactgctt actgtttcag      3600
     tatgctgatg actttttcat agtttgtttt cataaagacg tatccattgc gaaaggtgtt      3660
     ctggaagaca gtatagataa gttcgaagaa aaatgcaata ggctaaacct gtcattcaat      3720
     ccggtgaagt ctaagtgatt tacttcaaca atcgtagagc tgcgctaaat atctcgcatc      3780
     aaggagttga gatcagacaa gtagagcaga tcaaatacct aggcaggact atctcagcaa      3840
     acaactcagc ctctggtcac attgatctgg ccatctcgga atcgaacaga aactgtgcgt      3900
     ttctcagtgg gtgtcactat ggtatcagcc ccaaaagagg gcttatattt tacaaggcat      3960
     ttgtcagaag taggctagag tacgcgtgct catcattctg caacctgtcc aaatctgcct      4020
     tggccaaaat caaatcccac tgcaaccatc acctcagaaa gtcgctgggt ctgataatct      4080
     gcactctcgt tcctatcata tatcacatgg caggagaact tcccccggac tacaggatga      4140
     gattcctggc ggcgaaagag ttggttaagg tgtttgcatt taatctccca gcaagtgaaa      4200
     cagtgtcagc aaatagggat ttaaacacgg gctacgctaa ggcatatcgg gagtttggca      4260
     gcataataga tagagttgag gttttcgaga acacagcttc attttgcact aaaattagct      4320
     ccgacttaga atttttcaag ggttctgcac ccaacaagca cgctatagac caggcaggta      4380
     tcatgctgct cctcggggaa aagaaggatc agctgacaaa gggtggtttt gaaatctatt      4440
     acacggatgg gtcagtcgca gatgggcatt ccagcgccgc tttcctgcac gataggacag      4500
     gttttttaga tagctattac acgcacaaaa ccctttcctc gttgtccgcc gagctccttg      4560
     ctatcgagaa ggcatgagac catgctattt tgtacaattt tcctcgtgtc gcgctcctga      4620
     cagacagcag aaacggggcc ctcattctgg cgaagaacat tcaggataac tctatcgcct      4680
     acaaaatcag agaaaagatc caacaaaatc cacatctaag aactgtagag gttcactaca      4740
     ttcccggaca cgctaccaaa caaacgctgc gtaccaaaca ctaattgact tcatcgacga      4800
     aattgatgta aagctataaa cagtactcca acatcttcta ttctttgact tggcaatttc      4860
     caccttcaaa aggcgggcgg ccaaataatc ccacgctact cacgggtagt ttggtaactt      4920
     aaatcctaaa aaaaaaaaaa aaaaaaaggt tt                                    4952
//
ID   STALKER2_I  repbase;    DNA;    INV; 7032 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   STALKER2_I is an internal portion of STALKER2 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   pol; internal portion; STALKER2_I; STALKER2_LTR.
XX
NM   STALKER2_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7032
RA   Kapitonov V.V. and Jurka J.;
RT   "STALKER2_I.";
RL   Direct Submission to Repbase Update (31-MAR-2000).
XX
RN   [2]
RP   1-7032
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [2] (Consensus)
XX
CC   LTR of STALKER2 retrotransposon is listed in Repbase Update as
CC   STALKER2_LTR. STALKER2 has been multiplied recently since its
CC   proviral copies are ~99.5% identical to the consensus sequence
CC   and are flanked by 99% identical LTRs. There are about 10 copies
CC   of STALKER2 in the genome. STALKER2 has generated 4-bp
CC   target-site duplications upon its integration into the drosophila
CC   genome.
CC   [2]: updated the sequence and comment.
XX
FH   Key           Location/Qualifiers
FT   CDS           1850..3124
FT                 /product="STALKER2_I_1p"
FT                 /translation="MEWHEICTTIKNIKTKFDKTYKCLSPNRPIQAETIKK
FT                 HASTLVDCFNEARTLIYEHRETLNSEHWSKLSRLLIKLRLNLIAVKRKFSL
FT                 EISIPTILNTPLTIDTDEQSESIEPEEIDLEVTESEEKYTDIEDKDLLNLT
FT                 IPAILTLAEDTNQEKFKTENIMAQSNIDFLNTASKLIPDFDGKAENLTSFI
FT                 DALNIVDTIKGEHESLAVSVIKTKLKGHARNLISNEQTIAAIITQLSSAVK
FT                 GESVEVISAKLLSLQQKSKTANQYTQEVEKLTKALEGAYISEGLGQTLANK
FT                 YSTTTAVKAMTKNCSIDKVKLIMQAGTFTNMNDAISKFVNSCTEITGQSNT
FT                 VLYYRRGANNNNRGGRGYNRGRNGNNYNRGNNNSNNYNNRGGRRGRNQGRG
FT                 RGNSNQGYNTNNVRVTQNTSENSQTPLGNNQ"
FT   CDS           3028..6735
FT                 /product="STALKER2_I_2p"
FT                 /translation="RPRQLQPRLQYQQCESDAKHVGKLTDPFRKQSINARV
FT                 HSINYSLNIFVTFYNNSTDNKLTFLIDTGADISLLKVNSDNFKIQDDKIIN
FT                 IQGIGQGVIKSQGTTLIDLQSTKYIIPHEFHLVNSNFSIPCDGIIGIDFIK
FT                 KFNCQLDFKPSEDWFIIRPQNLNYPIYVPITYSAGNNTVLLPARSQVIRKI
FT                 DINSVNDQIFVPNQEIHNGIYVANTIAASKNVYIRLLNTTNFDQMVKVNKI
FT                 KYENLKDYDIHNTNLEDRSEKVLSLLKKNFPEQFKSQLTELCTKYSDVFGL
FT                 ETEPISTNNFYKQTLRLKDDEPIYIKNYRSPHSHIEEIQKQVGKLINDKIV
FT                 EPSVSEYNSPLLLVPKKSLPNSEQKKWRLVIDYRQINKKLLSDKFPLPRID
FT                 DILDQLGRAKYFSCLDLMSGFHQIELEENSRNITSFSTSNGSYRFTRLPFG
FT                 LKIAPNSFQRMMTISFSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTDVFNI
FT                 CRKYNLKLHPEKCSFFMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDA
FT                 DSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWSSECQNAFEYLK
FT                 EKLMHPTLLQYPDFRKEFCIITDASKQACGAVLTQNRDGIQLPISYASRSF
FT                 TKGESNKSTTEQELAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNP
FT                 NSKLTRMRLELEEYDFTVEYLKGKDNFVADALSRITINELKDISANVLKVT
FT                 TRQQSKQKNICADTNINKQEETLVNASKPNVYEVINNDEIRKVVTLRITES
FT                 KCLFKHGNKVIARIDVSDLYTNGILDLGQFFQRLETQAGIHEISQLKVAPS
FT                 EKIFETISIDSFKKMGNKLLKILRVALLKPVTQIYDQKDQEAILFTYHDDP
FT                 IQGGHTGITRTLAKIKRHYYWKNMTRHIKEYVNKCQKCLTSKTTTHTKTPL
FT                 TITETPTCAFDRVIVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIPNKN
FT                 ANTVAKAIFESFILKYGPMKTFITDMGTEYKNSIIADLCKYLRIDNITSTA
FT                 HHHQTLGTVERSHRTFNEYIRSYISVDKTDWDIWLQYFVYCFNTTPSVTHN
FT                 YCPYELVFGKTSNLAKQFSNIDNIDPIYNIDDYAKEVKFRLENAYKRARIL
FT                 LEXNKVKQKTSYDNKVSDFKLKVGDNVLIRNETGHKLEPTYLGPFEVIRIE
FT                 ENNNIVIRNKKNKEQKVHKDRLKIYN"
XX
SQ   Sequence 7032 BP; 2863 A; 1267 C; 1102 G; 1799 T; 1 other;
     tggcgaccgt gacttggtct cgagtctgcc tctgtgttgt gcctctgtgt attgtgatta        60
     tgtatcgtgt attgtgtttg tgttaaaaaa aaaaaaaaaa acaacatttt gtgcctatta       120
     tattcaacgt gtgaacacac aaacataact aaaatgtact tgtagtactt ggacgcatta       180
     aatgcaaata tatgttcaat tgaaacaaac aaagcacaaa aacacacaaa aacacacaca       240
     aaaacgcaca aaaacacgca aacacagcac acacagaaga acaagcggcg attgatggca       300
     gacgagccac aattcgccaa tgcacaacca caagtgcaac gggaccagcc aacgctagag       360
     gaagcgttgc ggttaaacaa cgccgatgga ccacgcccac tcacagtagc tgagtaccgg       420
     gcacggcagg agaagaaaca actacgaaag cacaaacgct caggacggag gattaaacta       480
     ctacaacaac gccgactggt caaggaaatg acccagttgg caaaagaaga atcagcacga       540
     caacgctacc aagagcgttt ggaagccatt gaacaagaac ttcgccaaag tgcgaagaca       600
     cgcaaacggg ctgcttaaat gcaaatgccc caatttgccc tagaattaaa ataaacccaa       660
     gccgaggcgg gaaaccgctg cttgaaaata ctaacaaaac tttatgctag gctttatact       720
     aaaaaatgtg gttggagatt ttttttttaa aatcctattg aattgtaaat tgtgacttgt       780
     gagccaacca cattagcact atcaaatttc catgtctctg ccactgagta tatatactca       840
     gttgcaaata atttgtgtaa ctttaacaac tttaaatttt ctatttcaaa aataaaattt       900
     tacattttaa atttaaatga ataacatttt aaaaatggat aaaaaaaaaa aaaaaaataa       960
     ctttcttaaa gagaattttc tttctaaaaa tacaagaaaa aatagatttt tatttttcat      1020
     attatatata taataacatt atatataata cttcaaaaaa aaaacgtttc attgaatata      1080
     taaaaatatt caacacaaat taaaataaat tttctcttca atttaaaatt acacaaatca      1140
     aacaaaaatt agaaataaaa ttaggaaacc taataagtaa aacaattata ttacatgtca      1200
     ttaaaattga atgagcatta aagataattc cataccgaag atagaccccc taaagacaat      1260
     catttcggaa ctgtctacta tgttagacaa aaattccaat atagcggact ccaccgcaaa      1320
     cgtaatcaat acagttcagg tatcacagcc cgaacttaaa ataattacgg tactcctcat      1380
     aataatagta gtactgctat gtgcgagtat gataacgaaa ttgtacaaac tacataacag      1440
     atgcctcaag aagaaatact tgagtaaggc attggaccta gataaggtct aaagtagtac      1500
     cctgcgtaca aatttcgaat attcaattaa atagaaatta tctttacata tatatataaa      1560
     aaaaaaaaaa aagaatatca aacatactat aaatgaaata ttaagtagag acccccactt      1620
     cgcaagtaga ctatatttta tacttgccga gcaacccgta agcctttacg agttgcaaat      1680
     attatacatt aacacctaca actgcgagtt ctttccaatg ttcgggttgg aaagagaaca      1740
     agaaatcatg gtattaaatt caataccaaa tgttatcgca gaagttgtag aaatatcaaa      1800
     cccaatacta gggtcaacag aaataataac agttcgtaag aattagagca tggaatggca      1860
     tgaaatatgc acaacaatta aaaatattaa aactaaattc gataagacat ataaatgctt      1920
     atcgcccaat aggcctatac aggctgaaac aattaaaaaa catgcatcta cattagtcga      1980
     ctgctttaat gaagcacgaa cactaatata cgaacataga gaaacactta attctgaaca      2040
     ctggtctaag ttatcaagac tattaatcaa acttcgatta aacttgatag cagttaaaag      2100
     gaaatttagt ttggaaattt caattccaac aatactaaat acccctttaa cgattgatac      2160
     agacgaacaa tctgaatcaa tagaaccaga agaaatcgat ttagaggtca ccgagtcgga      2220
     agaaaaatat accgacatcg aggataaaga cctactaaac ctaacaattc cagctatatt      2280
     aacattagct gaagacacta atcaggaaaa atttaaaaca gaaaacataa tggcacagtc      2340
     caatattgat tttctgaata cagcatcaaa gcttataccc gactttgacg gtaaggctga      2400
     aaacttaaca agttttatag atgctctaaa cattgtagat acaatcaaag gtgagcatga      2460
     gtctctagct gtttcggtta taaaaaccaa acttaaaggc catgcaagaa acctcataag      2520
     taatgagcag acaattgctg caatcattac ccaactgtca agtgcagtta aaggagaatc      2580
     ggtagaagtt atatcagcta agcttctcag tctccaacaa aagagtaaaa cggccaacca      2640
     atacacccaa gaggtggaga aactgacaaa ggctcttgaa ggcgcctata tcagtgaagg      2700
     tttaggccaa actcttgcca ataaatacag cactaccaca gctgtaaagg ccatgacgaa      2760
     aaattgctcc attgataagg taaaacttat catgcaagca ggcacattca caaacatgaa      2820
     tgatgccata tctaaatttg taaacagctg cacggagata acaggtcaga gtaacactgt      2880
     actctattat cgacgaggtg caaataacaa taatagaggg ggccgaggtt ataatcgcgg      2940
     cagaaatggc aacaattaca accgaggcaa caataatagt aataactata acaaccgtgg      3000
     aggaagacga ggccgaaacc aaggtagagg ccgcggcaac tccaaccaag gttacaatac      3060
     caacaatgtg agagtgacgc aaaacacgtc ggaaaactca cagacccctt taggaaacaa      3120
     tcaataaatg ctagagttca ttccatcaat tatagtctta atatattcgt aactttttac      3180
     aataattcaa ctgataacaa gttaacattt ctcattgata ctggtgcaga tatctcactt      3240
     ttaaaagtta attcagataa cttcaaaatt caggatgaca aaataataaa catccaaggc      3300
     ataggccaag gtgtaataaa gtctcaagga acaaccctaa tagatcttca atcaacaaaa      3360
     tatattattc cacatgaatt tcatttggta aactcaaatt tttcaatacc atgtgatgga      3420
     ataataggca ttgactttat aaaaaaattc aattgccaac ttgacttcaa accaagtgaa      3480
     gactggttta taattagacc ccaaaattta aattatccaa tatatgtccc aataacatat      3540
     agcgctggca acaatacagt tcttctgcca gccagatcac aagttattcg gaaaatagac      3600
     atcaatagcg taaatgatca aatattcgtt cctaatcagg aaatacataa tggaatttat      3660
     gttgcgaata caatagcagc atcaaaaaat gtatatattc gacttctaaa taccactaat      3720
     ttcgaccaaa tggtcaaagt aaacaaaatc aaatatgaaa atcttaaaga ttatgacatt      3780
     cataatacca atctagaaga tagaagcgaa aaagtactat cattactgaa gaagaatttt      3840
     ccagaacaat ttaaaagtca attaactgaa ttatgcacaa agtatagtga tgtgttcgga      3900
     ctggaaaccg aaccaatatc aacaaataat ttttataaac aaacattaag acttaaagat      3960
     gatgaaccca tttatattaa gaactacaga agcccgcata gccatatcga agaaattcaa      4020
     aaacaagtag ggaaattaat taacgacaaa atcgtagaac catctgtatc tgaatataac      4080
     agcccactct tgctagttcc gaaaaaatca ttaccgaatt cagaacaaaa gaaatggcga      4140
     ttagtaattg actatcgtca aattaataag aaactacttt ctgataaatt cccactccct      4200
     agaattgatg acattttaga tcaactaggt cgagctaaat acttttcatg ccttgacttg      4260
     atgtcaggtt tccatcaaat agaacttgaa gaaaactcaa gaaatataac atctttttca      4320
     acaagcaatg gctcatatcg cttcacgcga ttaccatttg gtctcaaaat agcaccaaat      4380
     tcatttcaga gaatgatgac tatatcattc tctggtttag aaccttctca ggcattcctt      4440
     tatatggatg acttaatggt gataggatgt tccgaaaaac acatgattaa aaacttaact      4500
     gatgttttta atatatgtag gaaatataac ctaaagttgc atccggaaaa atgttcattt      4560
     ttcatgcatg aagtgacatt cctaggtcac aaatgcacag acaaaggagt tttgccagat      4620
     gacaaaaaat atgacgtcat caaaaattat cctgtccctc acgatgcgga cagcgcaaga      4680
     cgatttgtag cattctgcaa ctattatcgt cgatttataa agaacttcgc cgactattca      4740
     cggcacataa ctagattatg taaaaagaat gttccttttg aatggtcaag cgaatgccaa      4800
     aacgcattcg aataccttaa agaaaagctt atgcacccca cattattaca atatcctgat      4860
     tttcgcaaag aattttgcat cataacggat gctagtaaac aagcttgtgg agcggtttta      4920
     acccagaacc gagacggaat tcagctccca atatcttatg catcacgttc gtttacaaaa      4980
     ggggaaagca ataagagtac aacggaacaa gagttagcgg caattcattg ggcaattacc      5040
     cattttagac catacattta tggcaaacat ttcacaatca aaacagatca cagaccttta      5100
     acatatctat tttctatgac caatcccaat tcaaaattaa ctcgcatgcg actagagctt      5160
     gaagaatacg acttcactgt agaataccta aagggaaaag ataattttgt ggcagatgca      5220
     ctgtcacgta tcactataaa cgagctgaaa gacatatcag caaatgtact aaaagtcact      5280
     acaagacagc aaagtaaaca gaaaaatatc tgcgcagata ctaatataaa taaacaagaa      5340
     gaaactcttg ttaacgcttc taagcccaac gtatatgaag tcattaataa tgacgaaata      5400
     cgaaaagtag tgactctgcg aataactgaa tcaaaatgtt tattcaaaca tggaaataaa      5460
     gttatagcaa gaattgatgt tagcgatctg tacaccaatg gaattctaga cttaggtcag      5520
     ttcttccaaa ggcttgaaac acaagccggt atacatgaga tcagccaact caaagtggca      5580
     ccgagcgaaa agatctttga aacaatttca atagactctt ttaaaaaaat gggcaataaa      5640
     ttattgaaaa tattgagagt agcgctactc aagccggtga cccaaatata tgatcaaaaa      5700
     gatcaagaag cgatactgtt tacataccat gacgatccaa ttcaaggagg tcatacaggc      5760
     attacaagaa cgctagcaaa aattaaaaga cattattatt ggaaaaatat gacacgtcat      5820
     atcaaagagt acgttaataa atgtcaaaaa tgccttacgt ctaaaacaac gacgcataca      5880
     aaaacacccc ttacaataac ggaaacacca acttgcgctt tcgacagagt gatagtagac      5940
     actataggtc cactacccaa atcggaaaat ggtaatgaat atgcagtcac tctaatctgt      6000
     gacttaacaa aatatttagt tgccatacca attcccaaca aaaatgcaaa tacagtcgca      6060
     aaagctatat ttgaatcatt cattctgaag tacggtccaa tgaagacgtt cattacggac      6120
     atgggaacag aatacaagaa tagcattata gccgacttat gcaaatatct gagaatagac      6180
     aatataacgt ctacagcaca ccaccaccag acattaggta ccgttgaaag aagtcatcga      6240
     accttcaatg agtacattcg ttcatatata tcagtagata aaactgactg ggacatatgg      6300
     ttacaatatt ttgtgtactg ttttaacact acaccatccg taacgcataa ttactgtcca      6360
     tatgaactag tatttggtaa gactagtaat ttagcaaaac aatttagtaa catagataat      6420
     atagacccta tatataacat agatgattac gctaaagaag ttaaatttag actagaaaac      6480
     gcgtataaaa gagcacgcat attattagaa agwaataaag taaaacagaa aaccagttat      6540
     gataacaaag ttagcgattt taaactaaaa gtaggagata acgttttaat aagaaacgaa      6600
     acaggtcaca aactagaacc aacgtatcta gggccattcg aagtaattag aatcgaagaa      6660
     aacaataaca tagtaattag gaataaaaag aacaaagaac agaaagttca taaggatagg      6720
     ttaaaaatat ataattaatg aaacgtttta tacaaaataa ataactaaaa aaaaaaaaaa      6780
     aaaaaaggtc tgatcaaccg aaaaaaaaaa aaatttaata agtttttgtc taagaaagtt      6840
     aaaaatagaa gcataacgta attataaaca acaaaaaaaa aaaaaatata aaaaaaaaaa      6900
     ttcttttaca caaattattc tgagaccaaa ctttttctaa tagaaaggat aaataagaaa      6960
     taatataaga aaaaaaatgt tttaattaat taaatgacta catatattac gtcatttctc      7020
     taaaaaggga gg                                                          7032
//
ID   STALKER2_LTR repbase;    DNA;    INV; 424 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   STALKER2_LTR is a long terminal repeat from the STALKER2
DE   nonautonomous endogenous retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; LTR; STALKER2_I;
KW   STALKER2_LTR; TABOR group.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-424
RA   Kapitonov V.V. and Jurka J.;
RT   "STALKER2_LTR.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
DR   [1] (Consensus)
XX
CC   STALKER2_LTR is a long terminal repeat from the STALKER2
CC   endogenous
CC   retrovirus. An internal portion of the retrovirus was deposited
CC   in Repbase Update as STALKER2_I. STALKER2_LTR copies are 99%
CC   identical to the consensus sequence. There is 79% identity
CC   between central portions of STALKER2_LTR and STALKER_LTR.
XX
SQ   Sequence 424 BP; 155 A; 94 C; 61 G; 114 T; 0 other;
     tgtagtgtat ctaccctcac tataactcta ctctacatat atataagtaa cgtacataca        60
     ttgtgacact ttgttgcaaa cacaaataaa cataattcac atcaaagacc acatgcactt       120
     acataaacac tccagccaat gaaatacgat ctaacgctta tacataagcc gatcgcggag       180
     cgtgagaatg ctgagcatgc acttagcagc tcaagtggtc aagccataca taacatatgt       240
     atgccttctg catacacatg tatatgtata tacaatatgt acaatatgta agaacaccat       300
     gtacgggtag ctgtacccaa agacagcaac ataggattca ttcaaataaa acgattcaaa       360
     cggaacagac gctctgagct attcaatatc tattacactg agctattact tattacttat       420
     taca                                                                    424
//
ID   STALKER3_LTR repbase;    DNA;    INV; 372 BP.
XX
AC   .
XX
DT   20-JUL-2000 (Rel. 5.06, Created)
DT   08-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   STALKER3_LTR is a long terminal repeat from the STALKER3
DE   endogenous retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; LTR;
KW   endogenous retrovirus; Gypsy superfamily; TABOR group;
KW   STALKER3_LTR; Gypsy-7_DMel-I.
XX
NM   STALKER3_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-372
RA   Kapitonov V.V. and Jurka J.;
RT   "STALKER3_LTR.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
DR   [1] (Consensus)
XX
CC   STALKER3_LTR is a long terminal repeat from the STALKER3
CC   endogenous
CC   retrovirus. STALKER3_LTR copies are 99% identical to the
CC   consensus
CC   sequence. There is 73% identity between STALKER3_LTR and
CC   STALKER2_LTR.
CC   The corresponding internal region is Gypsy-7_DMel-I.
XX
SQ   Sequence 372 BP; 138 A; 73 C; 73 G; 87 T; 1 other;
     tgtagtgtat ctaccctcaa tatgtaragt agagttaata tgtaagtaag taatatgtaa        60
     agtagagtta atatgtaagt aagcaaaaga ccaccaacac ttacatgaac actccagctc       120
     ttgaaatacg atcgagcgct taaacataag ccgatcgcgg agcgtgagag tgccgagcat       180
     acacctagca gctcaagtga ttaagataag ataagataag ataacaaaca cgtagtctta       240
     agcgcgtcat gtgcgggtgg ctgtacccaa gaacagcaaa gtgaattcat tcgaataaac       300
     cgcttcaagc agagcagagc caagtctatt atatcaactt caaaaatacc gtataacctt       360
     gaacctatta ca                                                           372
//
ID   STALKER4_I  repbase;    DNA;    INV; 6520 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Drosophila melanogaster retrotransposon Stalker4 - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   internal portion; gag-pol domain; STALKER4_I.
XX
NM   STALKER4_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RP   1-6520
RA   Gentles A. and Jurka J.;
RT   "Stalker4 consensus sequence, internal portion.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
RN   [3]
RP   1-6520
RA   Bao W.;
RT   "Consensus updated.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   Average similarity to consensus 99%. LTR sequence deposited as
CC   STALKER4_LTR. Generates a 4 bp TSD.
CC   [3]: Termini are updated.
XX
FH   Key           Location/Qualifiers
FT   CDS           1356..2573
FT                 /product="STALKER4_I_1p"
FT                 /translation="MEWSEIAIRIDEFRFRFDKSYKCINRDAVIKSETLKN
FT                 HIETLVGEYNNIVTLVNKYANRLTSEHNNKCLRVIKSLNTRLNNIRKRRHI
FT                 LIDVPESLSQLVEFNTDQFKELDESVQSSGAESDSDIETLEGSDRIEFKSE
FT                 PIKISEMAQTLIEFIRLATSLIPEFDGKPENLQSFLDALGLLDSLKSTHET
FT                 TAVSLIKTKLKGHVRNLISNEQTIAAIITQLSSAVKGESVEVISAKLLNLQ
FT                 QRNKTANQYTQEVEKLTKALEGAYISEGLSQSLANKYSTTTAVKAMTQNCS
FT                 IDKVKLIMQAGTFTNMNDAISKFVNSCTEITGQSNTVLYYRRGANNYNRGA
FT                 RGYNRGRNINHNNYNRGSNNNNNNNYNNRGGRRGQNQGRGRGNYNHGNNNN
FT                 SSVRIAQNTSEN"
FT   CDS           2540..6214
FT                 /product="STALKER4_I_2p"
FT                 /translation="QCENRAKYVGKLTEPFRKQPINVKVHSINYSLNIFVT
FT                 FYNHSTENKLTFLIDTGADISLLKVNSDNFVIQNEKIINIEGIGQGVIKSQ
FT                 GTTLIELQSTKYIIPHEFHLVNPNFAIPCDGIIGIDFIKKFNCQLDFKPSE
FT                 DWFIIRPQNLNYPIYVPITYSAGNNTVLLPARSQVIRKIDINVVNDFIFVP
FT                 NQEIHNGIYVANTIAASKHVYVRLLNTTNFDQVVKVNKIQYENLKDYDIHN
FT                 TDTGNRSEQILSKLKKNFPDQFKNQLTELCTQYSDVFGLETEPISTNNFYK
FT                 QTLRLKDDEPIYIKNYRSPHSHIEEIQKQVGKLISDKIVEPSVSEYNSPLL
FT                 LVPKKSLPNSQEKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYF
FT                 SCLDLMSGFHQIELEENSRNITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM
FT                 TISFSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTDVFNVCRKYNLKLHPEK
FT                 CSFFMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDADSARRFVAFCNY
FT                 YRRFIRNFADYSRHITRLCKKNVPFEWSSECQNAFEYLKENLMHPTLLQYP
FT                 DFRKEFCIITDASKQACGAVLTQNRNGIQLPIAYASRSFTKGESNKSTTEQ
FT                 ELAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSKLTRMRLELE
FT                 EYDFTVEYLRGKDNFVADALSRINIKELKDMQHKVLKVTTRQQSRQENCTV
FT                 TNKELLPRQSIQNVSKPNVHEVITNDEVRKVVTLRITESICLLKRGNKVIA
FT                 RIDVDDLYTNGIFDLGQFFQRLEMQAGILKISQLKLAPSEKIFETISIDNF
FT                 KNMGNIKLKTLRVALLQPVTIIKTEKEIQSILSTYHDDPIQGGHTGITRTL
FT                 AKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETPTNAFDI
FT                 VIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVANKSANTVAKAIFENF
FT                 ILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQTLGTIERS
FT                 HRTFNEYIRSYISADKTDWDVWIQYFTYCFNTTPSVMHNYCPYELVFGRLP
FT                 RQFANFNKTDRIEPLYNIEDYSKEIKFRLEIAYKRARLLLEKAKSYRKQLY
FT                 DKKTSDFQLKIGDKVILRNESGHKLDPVYIGPYTVETIEDRDNIVIRDTKQ
FT                 KKQKVHKDRLKIYNQ"
XX
SQ   Sequence 6520 BP; 2588 A; 1170 C; 1074 G; 1687 T; 1 other;
     tggcgaccgt gacagkgttc acgcgtgcat gaagttaacg attataataa aagcatgaag        60
     tgtccgtggc caaaagaaat aaaatgaata aattcaaaca aaattcaaat tcgtggccaa       120
     agaaataaaa acaataaatt caaacattac atggataaat gcattacata catagaaatg       180
     cagaaaggac aaatcttctt aaaaaacttt tgaacataaa tggcagagga gccacaattc       240
     tcgaaggcag tacccactaa gcaaagggac ttgccaactc tggaagaggc cctacaggag       300
     aatccagcta atggaccacg cccactcacg ataaaagagt acagagccag gcagcagaaa       360
     aaaccgcaaa ataaacataa aagaagcggt caaagaatta agctacttca gcaacggcga       420
     ctggtcaagg acatgaccaa gtcggcaaaa gacgaggaat cccgacaacg ctacatagtg       480
     cgtcttcaag aaatagagac taagcttcgc aaaggtgcga aacaacgcaa acgggctgca       540
     taaatgccaa tgccccaatt tgccaaaact tcaatcagat gcatcccgac aacgctacaa       600
     agagcgtctt caaacacagg aaataagttt tgcaaaggtg cgaaacaacg caaacgggct       660
     gcataaatgc caatgcccca atttgcttta gatttaattt ctaccccaag ccgatgcggg       720
     aaaccgctgc ttggaaaata ctaaaatctg ttaggctttt tcactaacaa tgtggttgga       780
     gaattttttt ttttattatt gtaaacgact atgtgagcca accacatata ttaaccatta       840
     atatttccac gtctctggca ctgagtatac atatatactc agctgcaaaa tgttatttgt       900
     gtaaaatgac aacaatgaaa aaagttctta ttttgactaa tataaaagaa aatattaatt       960
     tcatttttcc gattttcaag aagaaaatat ttttccttcc tttaagctcc aaatagaata      1020
     tcttattttt ttttcctttt tttaaagatc cgtttcattg aatatagata aaatgggatg      1080
     gtttagcgat tctagtgagg caaaggacaa tactgccaac gtagttaata acgtaaaaat      1140
     tatagatcac acagacgata taaatgcgtt gtggatctta ttgctgatca ttacaatagt      1200
     actacttcta caatttctgc ttacaattta tgttaagcat aacaagatca tcaaaagacg      1260
     ttatataaat agggcaaatc gtttagacca gatttaaaaa aaaaataata tggattagaa      1320
     gaaagcttaa taaaaacttt ttttttacga caagaatgga atggagcgaa atagcgatac      1380
     gaatagacga atttcgcttc aggttcgata agtcttataa atgtatcaat agagacgcag      1440
     taataaaatc cgaaactttg aaaaatcata tagagacatt agtaggagaa tataataata      1500
     tagttacatt agtaaataaa tatgcaaata ggctcacatc tgaacataat aacaaatgtt      1560
     tgagggttat aaaatcccta aacacaagat taaataacat cagaaaaaga aggcatattc      1620
     tgatagatgt accagaaagt ctaagtcaat tggttgaatt caacacagac cagttcaaag      1680
     aactagacga atctgttcaa tcaagcggcg ctgagtccga tagtgacatt gaaacgctag      1740
     aaggaagcga ccgaattgaa tttaaatctg aaccaataaa aatttctgag atggcacaga      1800
     cattgataga atttatcagg ctagccacat ctctgatacc agagtttgat ggtaaaccag      1860
     aaaatctaca aagttttttg gatgctctag gtctactaga tagcttaaag agcacacatg      1920
     aaacgacagc agtaagccta ataaaaacta aacttaaagg ccatgtaaga aaccttataa      1980
     gtaatgagca gacgattgct gcaatcatta cccaactgtc aagtgcagta aaaggagaat      2040
     cggtagaagt gatatctgcc aagcttctga atctacaaca gagaaataaa acggctaacc      2100
     aatacaccca agaggtggag aaactgacaa aggcccttga aggtgcctat atcagtgaag      2160
     gtctcagcca gtccttagca aataaataca gcactacaac agctgtaaaa gcaatgacac      2220
     agaattgctc cattgataag gtaaaactta tcatgcaagc aggcacattc acaaacatga      2280
     atgatgccat ctccaaattt gtaaacagtt gcacagagat aacaggtcaa agtaacactg      2340
     tactctatta tcgacgaggt gcaaataatt ataatagagg cgcccggggt tataatcgtg      2400
     gtagaaatat caaccacaac aattacaacc gaggtagcaa taacaacaat aataataact      2460
     ataataaccg tggaggtagg cgaggccaaa accaagggag aggccgcgga aactacaacc      2520
     atggtaataa taataatagc agtgtgagaa tcgcgcaaaa tacgtcggaa aactaacaga      2580
     accctttagg aaacaaccaa taaatgtaaa agttcattcc atcaattata gtcttaatat      2640
     attcgtaacc ttctataatc attccactga aaataaacta acatttctca tagatactgg      2700
     tgcagatatc tcacttttga aagtaaattc tgataacttc gtaattcaaa atgaaaaaat      2760
     aataaacatc gaaggcatag gccaaggtgt gataaagtct caaggaacaa ccttaataga      2820
     actccaatca acaaaatata ttatcccaca tgaatttcat ttggtaaacc caaattttgc      2880
     aataccatgt gatggaataa taggcattga ttttataaag aaattcaatt gtcaactaga      2940
     tttcaaacca agtgaagact ggtttataat tagaccccaa aatttaaatt atccaatata      3000
     tgtcccgata acatatagcg ctggcaacaa tacagttctt ctgccagcca gatcacaagt      3060
     tattcggaaa atagacatta atgttgtaaa tgatttcata tttgttccta atcaagaaat      3120
     acacaatggg atttatgttg caaatacaat agcagcatcc aaacatgtat acgttcgact      3180
     tctaaataca actaatttcg accaagtggt caaagtaaat aaaatacaat atgaaaatct      3240
     aaaagattat gacattcata ataccgacac tggaaataga agcgaacaaa tactttcaaa      3300
     actaaagaaa aattttccag accaatttaa aaatcaatta acagaattat gcacacagta      3360
     tagtgatgtg ttcggactgg aaaccgaacc tatatcaaca aataattttt ataaacaaac      3420
     attaagactt aaagatgatg aacccattta tataaaaaac tatagaagcc cgcatagcca      3480
     tattgaggaa attcaaaaac aagtagggaa attaataagc gacaaaatcg tcgaaccgtc      3540
     tgtatctgag tataacagcc cactcttgct agttccaaaa aaatcattac caaattcaca      3600
     agagaaaaaa tggcgattag taattgacta tcgtcaaata aacaaaaaac ttctttctga      3660
     caaatttcca ctccctagaa ttgatgacat tttagatcaa ctaggtcgag ctaaatactt      3720
     ttcatgcctt gacttgatgt caggtttcca tcaaatagaa cttgaggaaa actctaggaa      3780
     tataacatct ttttcaacga gcaatggctc atatcgcttc acgcgattac catttggtct      3840
     taaaatagca ccaaattcat ttcagaggat gatgactata tcattctcgg gattagaacc      3900
     ctctcaggca ttcctttaca tggatgactt aatggtgata ggatgttccg aaaaacacat      3960
     gattaaaaac ttaactgacg tttttaatgt atgtaggaaa tataacctaa agttgcatcc      4020
     agaaaaatgt tcatttttca tgcacgaagt gacattccta ggtcacaaat gcacagacaa      4080
     aggagtattg ccagatgaca agaaatatga cgtcatcaaa aattatcctg tccctcatga      4140
     tgcggacagt gcaagacgat ttgtagcatt ctgcaactat tatcgtcgat ttataaggaa      4200
     cttcgccgac tattcacggc acataactag attatgtaaa aagaatgtcc cttttgaatg      4260
     gtcaagcgaa tgccagaacg cattcgaata cctaaaagaa aatcttatgc accccacact      4320
     attacaatat cctgattttc gcaaagaatt ttgcattata acggatgcta gtaaacaagc      4380
     ttgcggagcg gttctaactc agaaccgaaa cgggattcag ctcccaatag cttatgcatc      4440
     acgttcattt acaaaaggag aaagcaataa gagtacaacg gaacaagaac tagcggcaat      4500
     ccattgggca attacccatt ttagaccata catttatggc aagcatttca ccattaaaac      4560
     ggaccacaga ccattaacgt acctattttc tatgactaat cccagttcta aattaactcg      4620
     catgcggcta gaactagaag aatacgactt cacagtagaa tacctaaggg ggaaagataa      4680
     ttttgtagca gacgcactct cacgtataaa tataaaggaa ctcaaagaca tgcaacataa      4740
     agtcctgaaa gtcactacca ggcaacaaag tagacaagaa aactgtacag taacaaacaa      4800
     ggaactattg cctaggcaaa gtatccaaaa tgtatctaag cccaacgtac acgaagtcat      4860
     aacaaatgat gaagtacgaa aagtagtgac cttgcgaata actgaatcta tttgtttact      4920
     aaaacgagga aataaagtta ttgcaagaat tgatgttgac gatttatata ccaatggaat      4980
     ttttgattta ggtcagttct tccaaaggct tgaaatgcaa gccggtatac taaaaatcag      5040
     ccaactcaaa ttggcaccga gtgaaaaaat ctttgaaacc atttcaatag ataatttcaa      5100
     aaatatgggc aatataaaat tgaaaacatt aagagtagcg ctactccagc cggtgaccat      5160
     tataaaaact gaaaaagaga tacaatcgat actgtctaca tatcatgacg atccaattca      5220
     aggaggtcat acaggcatta caagaacgct agcgaaaata aaaagacact attattggaa      5280
     aaatatgact cgtcatataa aagagtacat acgtagatgt cataaatgcc aaatgtcaaa      5340
     aacaacgaca catacaaaga ccccattgac ttacacagaa accccaacaa atgcttttga      5400
     tatagtgata gtggacacag ttggtccact accgaaatca gaatatggca acgaatacat      5460
     cgtcacacta atatgtgatt tgacgaagta tctagtaacc atacctgttg cgaataagag      5520
     cgcaaatact gtcgcaaaag ctatattcga aaattttata ctaaagtacg gtccaatgaa      5580
     gacgttcatt tcggacatgg gtaccgagta taaaaacaat gtaattcaag atatgtgtaa      5640
     atatatgaaa attgaaaatc ttacatccac tgcatatcac caccagactt tagggacaat      5700
     cgaacgaagt catagaacat tcaatgaata cattcgttca tacatctctg cagataaaac      5760
     tgattgggac gtttggatac aatactttac atattgtttc aacacaacac catcagtcat      5820
     gcataattac tgtccatatg aactagtctt tggaagatta ccaaggcagt tcgcaaattt      5880
     taataaaaca gatagaatag aaccactgta taatatagaa gattactcaa aggaaataaa      5940
     atttagatta gaaatagcat ataaaagagc tagacttttg ttagaaaaag ctaagtctta      6000
     tagaaaacaa ctttatgata agaaaacttc agattttcaa ttaaaaatag gagataaagt      6060
     tatactaagg aacgaatcgg gtcataagtt agatccagta tatataggcc cttatactgt      6120
     agaaaccata gaagacagag ataacatagt aattagagat acaaaacaaa agaagcaaaa      6180
     agtacataag gatagactaa aaatatataa tcaatgaaac gtttcatttc acttaagaaa      6240
     aggtctgatc aacctcaaaa caaaaaaaaa aaaaaacaca aaaaaaattt aattattatt      6300
     tttccttcta agaaagttaa acataaatcc aaaaacatcg taattcaaca tacatttttt      6360
     gtattattct gtcattatac aaaaatgctt tgagacaaaa cattgctaat aattaataag      6420
     aaaaatcaat ttcaaaaaaa aatttttcct ttctaaacac aatattaata ttgagaactc      6480
     aatgactaca tatattacgt catttcttta aaaagggagg                            6520
//
ID   STALKER4_LTR repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   13-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   Drosophila melanogaster retrotransposon Stalker4 - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag-pol domain;
KW   STALKER4_LTR.
XX
NM   STALKER4_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D. et al.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RP   1-430
RA   Gentles A. and Jurka J.;
RT   "Stalker4 consensus sequence of LTR.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
RN   [3]
RP   1-430
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (13-AUG-2018).
XX
DR   [3] (Consensus)
XX
CC   Average similarity to consensus 99%. Internal sequence deposited
CC   as STALKER4_I.
XX
SQ   Sequence 430 BP; 156 A; 84 C; 74 G; 116 T; 0 other;
     tgtagcatat tggactaatc taccctaaga atacaataga tgattgggta taacatagcg        60
     tcaatacatt gtgacacttt gtcataataa atataaatat acaaatatac aaaaagacca       120
     ccaaaaacta cgtaagcact ccagcgcccc agtaatacga tctaacgctt atacataagc       180
     cgatcgcgga gcgtgggaat gctgagcatg cactttgcag ctcaagtggt caatgccttc       240
     tgcatgcata tgtatatgta taaatgtaag taagaataca tagatataag caatgtatgt       300
     gcgggttagc tgaacccaac ttcagcacac tttgatcatt cgaataaaca gattcaaaca       360
     gagcagaggt tctgagctcg gaaaccaaat cttttacatc tatacctgtt atatttttaa       420
     aacaattaca                                                              430
//
ID   STREP_CD    repbase;    DNA;    INV; 1507 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Chironomus dilutus subtelomeric repeat, consensus.
XX
KW   SAT; Satellite; Simple Repeat; STREP_CD; subtelomeric repeat.
XX
OS   Chironomus dilutus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RA   Rosen M. and Edstrom J.;
RT   "DNA structures common for chironomid telomeres terminating with
RT   complex repeats.";
RL   Insect Mol. Biol 9(3), 341-347 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Chironomus dilutus subtelomeric repeat, consensus.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1507 BP; 600 A; 250 C; 218 G; 439 T; 0 other;
     aattctcaaa actgagcgag ctagagcaaa aaaaccactt tccatacaaa atttcccaaa        60
     aaaaaaatct cgaaaaaatt ggaaaaatcg tcctagctcc tccatttctc aaccattttg       120
     ggaggtttat atatcgatgg atagctctca ttcgtagcta tccaacggtg caaaaaaatt       180
     aaaaaaattc gttaaactga gcgagctaga gcaaaaaaac caaaaatgca caccccccca       240
     tcaccaaaaa atcgtcataa ctcctcaaat tttcaacttt ttgaagaggt ttatatatcg       300
     ttggatagat ctcattaaaa ctcaactttc acccatacaa accaccactt tattctcaaa       360
     gctgagagcg ctagagcaaa aaaactaaaa atatccattc acttagctaa gtttcataat       420
     tattataaat ttaacggttt tttgaaattt gattttttaa cggtttttta aaattcaaat       480
     gtccatgaga aaatgacatg agtgacattg gattcatcgt ttcttgaaaa tttttatttc       540
     cttaattttg tctttattaa gagcatttaa aggaggaact cgatataagg aaggaagaag       600
     aacatgttag gaagatattc ctacataatt ggatcattaa aagtgagtaa aaccatcaaa       660
     acaaaattca tcaaaatttt tagcatggaa aggccccgcg aatttgccgc cgccaggtcg       720
     ccccgatatt ttggctatgt ccgcggttag gtaaaaaagt tgaaaaactc attaaataat       780
     gagttaaatt aattacaaat actcaataag tatccgcaaa catggcaaga tttctttaaa       840
     ttccacaaat cttgtcaaat aacaatacaa attgctcaaa aatttaattt tctcaaaatt       900
     tttacaaaat aatcaataaa aaaggtaagt aaattaaatc agaatgtcat caaaagaacc       960
     agcattaaaa ataaggagga tagaacacaa catatctgag aaaatattaa aagaaagtgc      1020
     atgaaaatta aaatttctga aaaaaaaatt cagtccttgt atgaaaaaat tattttcacg      1080
     cgcaaatttt tcattttatt aatttaagct gttaaacagc tttatcttta tttcagcata      1140
     ctaaaaaacg attcagagga caaaacaatg ctgaggaaat agaagaacaa caatcgaagt      1200
     atgtattgag gtcaaaaaat ttcatttttt attttggcat ataaataaac atttttattt      1260
     tgccaggagt tcgctgtaca actaaaagta gtaaaagtgt caattaaggc actggaataa      1320
     aagagtagga agatcacaac aataaggaaa aaagacatta caaaattctc acaagttctg      1380
     cagctttaat tttcttatca atcgaaattt atttggattg caaagtgtta gatgacggag      1440
     aaagcctcga tggctatcaa ctgctccaac caaaatattc cgagtcccag aaaggcatgt      1500
     tttgcca                                                                1507
//
ID   STTREP_Mp   repbase;    DNA;    INV; 169 BP.
XX
AC   AF039654;
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Myzus persicae subtelomeric tandem repeat sequence.
XX
KW   STTREP_Mp; tandem repeat; Telomeric repeat.
XX
NM   STTREP_Mp.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RP   1-169
RA   Spence J.M., Blackman R.L., Testa J.M. and Ready P.D.;
RT   "A 169-base pair tandem repeat DNA marker for subtelomeric
RT   heterochromatin and chromosomal rearrangements in aphids of the
RT   Myzus persicae group.";
RL   Chromosome Res 6(3), 167-175 (1998).
XX
DR   Genbank; AF039654; Positions       1     169.
XX
SQ   Sequence 169 BP; 54 A; 39 C; 26 G; 50 T; 0 other;
     ccaaaattaa tcgaatttcg ggaatttcaa agttctcgtt ctcccgttct attcaaccaa        60
     atgacttcaa accttcacca aactcaagag gaagtcaata gctttctttt gataccactc       120
     cgacttggtt agctcaaata cacaggtcgt gagacaattt tgaaaatgg                   169
//
ID   S_DM        repbase;    DNA;    INV; 1736 BP.
XX
AC   U33463;
XX
DT   22-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   S_DM is a Tc1/mariner-like DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposase;
KW   TIR; Tc1/mariner superfamily; S_DM.
XX
NM   S_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1736
RA   Merriman J.P., Grimes D.C., Ambroziak J., Hackett A.D., Skinner P.
RA   and Simmons J.M.;
RT   "S elements: a family of Tc1-like transposons in the genome of
RT   Drosophila melanogaster.";
RL   Genetics 141(4), 1425-1438 (1995).
XX
RN   [2]
RP   1-1736
RA   Simmons J.M. and Merriman J.P.;
RT   "S_DM.";
RL   Direct Submission to Genbank (09-AUG-1995)Michael J. Simmons,
RL   Genetic and Cell Biology, University of Minnesota, 1445 Gortner
RL   Ave., 250 BioScience Center, St. Paul, MN 55108-1095, USA.
XX
DR   GenBank; U33463; Positions      37    1772.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..1438
FT                 /product="S_DM_1p"
FT                 /translation="MPGKRLAFEVTQLIYYNHQLGKSIPELVEIFSVSRKT
FT                 VYNILNRXXKEGRLEPKSGGGCKTKINKRVDRLIMRKAIANPRISVRSLAQ
FT                 DIREECHLTVSHETVRQVILRHRYSSRVARKKPLLSEINIEKRHSFAVSMM
FT                 DHAEEYWDDVIFCDETKMMLFYNDGPSRVWRKPLSALETQNIIPTIKFGKL
FT                 SVMIWGCISSHGVGKLAFIESTMNAVQYLDILKTNLKASAEKFGLFSNNKP
FT                 NFKFYQDNDPKHKEYNVRNWLLYNCGKVIDTPPQSPDLNPIENLWAYLKKK
FT                 VAKRGPKTRQQLMAAIIEEWEKIPLEYDLKKLIHSMKKRLQLVAKANGGHT
FT                 KY"
XX
SQ   Sequence 1736 BP; 600 A; 287 C; 300 G; 545 T; 4 other;
     cagtttgtca agaaactgtt tacacaccgc aaaataagta gaatttttga ctttaaaggc        60
     caaaattaag ggttttttgc ttaattaaac gcaatttttt tatgaaatat aattaaacaa       120
     tatttatttt acttataaat taaaaaacaa attcaatata tcaaatatac aagaaaataa       180
     acaacaaatt tcttgtttac acacttttga gagtgccaag aaactcttta cacagttttg       240
     ggttcctact ttgttttgct ctttttctta gaaacaatct catttttccg ttatttttgt       300
     cttatgcatt cctttttaca acgcttctat tgcaattttt tcactttgct tgtgaaattt       360
     tgttgatcta acgtgcttaa agcgaattat taaatttaat gaaatgcctg gaaagagatt       420
     ggcttttgaa gtgacccagc taatatacta taaccaccag ttgggaaaat ctattcctga       480
     attagtagaa atattttccg tatcccgtaa aaccgtctat aatattttaa atcgtnnnna       540
     aaaagagggc aggcttgaac ctaagagtgg tggtgggtgt aaaacgaaaa ttaacaagcg       600
     agtagaccgc cttattatgc gaaaagcgat tgcgaacccc cgaatctcgg tcagatcact       660
     tgctcaggat atcagggaag aatgtcacct aactgtatca cacgaaactg tgcgccaagt       720
     catcctacgc cataggtact cttcaagagt tgcaagaaaa aagcctttgc tatcagagat       780
     caatattgaa aagcgtcatt cattcgctgt gagcatgatg gatcatgcgg aagagtactg       840
     ggatgacgtc atattttgtg acgaaacaaa aatgatgctc ttttataacg atgggccaag       900
     cagagtatgg cgcaaaccgt tgagtgcgct agaaacacaa aatataattc caacaatcaa       960
     atttggaaaa ttgtcagtga tgatttgggg ctgtatttcc agccatggag tgggcaaact      1020
     agcctttatt gaaagcacta tgaatgccgt gcaatatcta gatattttaa aaacaaattt      1080
     gaaggccagt gcagaaaaat ttggtttgtt tagcaacaac aagccaaatt ttaagtttta      1140
     tcaggacaat gatcccaaac ataaagagta caatgtacgc aactggctac tctataactg      1200
     tggcaaggtg atcgatacgc cccctcagag tcctgatcta aaccccattg aaaatttgtg      1260
     ggcctactta aagaagaagg ttgcaaaaag gggccccaaa actcgacaac aactcatggc      1320
     tgcgataatc gaagagtggg aaaagatccc gcttgaatat gacctaaaaa aactcataca      1380
     ttccatgaaa aaaaggcttc aacttgtagc caaagccaat gggggtcata ctaaatacta      1440
     aaacttttca aatattatca aaataattaa aaaatttagg attaaactta ggtttagtgt      1500
     tttgtgtaaa gagtttcttg acactctcaa aagtgtgtaa acttgaaatt tgttgtttat      1560
     tttcttgtat atttgatata ttgaatttgt tttttaattt ataagtaaaa taaatattgt      1620
     ttaattatat ttcataaaaa aattgcgttt aattaagcga aaaaccctta attttgacct      1680
     ttaaagtcaa aaattctact tattttacgg tgtgtaaaca gtttcttgac aaactg          1736
//
ID   T1          repbase;    DNA;    INV; 4634 BP.
XX
AC   M93689;
XX
DT   03-DEC-2002 (Rel. 7.11, Created)
DT   20-MAY-2005 (Rel. 10.06, Last updated, Version 2)
XX
DE   T1 is a non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; AGT1;
KW   CR1 clade; ORF1; ORF2; T1; T1_AG; reverse transcriptase.
XX
NM   T1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Besansky J.N., Bedell A.J. and Mukabayire O.;
RT   "Evolution of the T1 retroposon family in the Anopheles gambiae
RT   complex.";
RL   Mol. Biol. Evol 7(3), 229-246 (1990).
XX
RN   [2]
RP   1-4634
RA   Besansky J.N., Bedell A.J. and Mukabayire O.;
RT   "A retrotransposable element from the mosquito Anopheles
RT   gambiae.";
RL   Mol. Cell. Biol 10(3), 863-871 (1990).
XX
DR   Genbank; M93689; Positions       1    4634.
XX
CC   T1 is a CR1-like non-LTR retrotransposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           1487..4414
FT                 /product="T1-ORF2p"
FT                 /note="reverse transcriptase"
FT                 /translation="LTINRPFVIYYQNVRGLRTKYNELRLSANESGFEMLA
FT                 LTETWLNESIPSNMVLDSDSYNIYRCDRSRLNNERSRGGGVLLACSSRYPS
FT                 VALNMNQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXD
FT                 AYMHMKPNDHLILLGDFNQPALGWSPAAAVRSDSSLPMRHYVPHISLNSSS
FT                 SCFLDVLNLHELYQLNGVHNHSNHYLDLVLSNSAAAACSSVYPASSLLLPQ
FT                 DAHHPALEIALPSSLFRASRVRNELPSAPNSLSVRYNFRLTDYRKLNSILS
FT                 RADWSFFYQCTSVDEAVQSFNALLTSALLSCTPIFRSPPNPPWSNRTLRNL
FT                 KKDRMKYLRRYRLNRSAFNFRLFKYAASAHRLYNRARFEAYSSRLQSRFRS
FT                 DPASFWQFVRIRRGCNTLPNEMVLDSRTASTPVEICELFSAHFSQMFEPPV
FT                 SDPNLIEGGLLYTPENLINLSDISVSSETVVQVLFGLKRSFTPGPDGIPAS
FT                 VLINCKDVLAPHLAKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNYR
FT                 GITQTCATAKTFELCIFPTILHSCSSAISPKQHGFMPGRSTSTNLMSFVTN
FT                 IFRSFEAGTQLDAIYTDFHAAFDSLPHSLLLAKLSKLGFGDGIISWLSSYL
FT                 SNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHL
FT                 LYADDIKIFLPVSSSSDCMSLQHYLNAFVHWCSSNLLRLCPDKCSVISFSH
FT                 SLSPISFNYTLSNSSLSRVLSIRDLGIILDSRLNFKLQLDEVLLKANRTLG
FT                 FILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNPPTIDGCSRIESIQRL
FT                 FTRVAFRRLFGAASLPPYETRLQLFNLHSLSFRRQVSQACFIGGLLLSDTD
FT                 APDLLSSISLYVPSRSLRPRDPLSIETRHTLYTFNDPILSCFRLFNHFYYL
FT                 FDFDSSLNSFRNRIFSSNSL*"
FT   CDS           169..1497
FT                 /product="T1-ORF1p"
FT                 /note="DNA/RNA-binding protein"
FT                 /translation="ILAPSLLLFRQFCRDIVWLRSCSCHSSVCAVSFVMQC
FT                 STCNAPTDSANSVSCAGVCGSKHHTHCTGLSRDSTRELGRNNQLLWLCKNC
FT                 NEFRNGTNSLLTSEIAALLELVKAEILTTIDSSLSSLRSAIKSDLLAEILA
FT                 LADKLTPVLAKPSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSME
FT                 LTADIQQAANDTNTVEASDSCNHYTHRTKVTSDISAGPCRTNTKSSSDPVL
FT                 NHDTTNTGIAEKVWLYFTNIKSHVSADDMRVWLKAVLPTDNIDVYRLTKKG
FT                 ANLDLMSFISFKVSIPKSLKDLALQSTIWPVSLTVREFVDRGLPKQRIHER
FT                 ARFDPSALTSHRSSSANCSSAAPKSTAHPDHFLDHRSPSPQRGNQSLSQMT
FT                 EILEAIQPEFPPTPPQLSPGVGLQSQNNLSNTNRSPQISPFAKRIAHN*"
XX
SQ   Sequence 4634 BP; 1059 A; 1101 C; 880 G; 1593 T; 1 other;
     agagagagat cgactgtcaa accgagtggt tgtgccttcc ttgtgctcct gatttttgat        60
     gctgttttgc cgtgttactg cctgattttc aacatttgca acattggtgc tgctgagttg       120
     cttgtactgg ctagtgcgtg ccttcgattg ttatcaagtt gcacttgaat tcttgcacct       180
     agtctcctgt tatttcgtca gttttgccga gatattgttt ggcttcgttc ctgctcctgt       240
     cactcgtcag tttgtgctgt gtcattcgtt atgcagtgct caacctgcaa tgcacccacc       300
     gatagtgcaa attcggtgtc ctgcgccggt gtgtgtggct ccaagcatca tacccattgc       360
     acgggtttgt cccgtgattc tactcgagag cttgggcgga ataatcaatt gttgtggttg       420
     tgcaaaaatt gtaacgagtt tcgcaatggc acaaactcac ttctcacaag tgagatagca       480
     gccctactcg agttggtgaa agcagaaatt ctcaccacga ttgactcatc tctctcttct       540
     cttagatcgg ctatcaagag cgatttgctt gctgagatcc tcgctctcgc tgataagcta       600
     acacccgtat tagctaagcc gtctgtttct cagccatcgc gaacgcacac gtccactaat       660
     gcatcgtcac tcaacgccac taataccaga acgactaaaa cagcatccac tcgccgtaca       720
     tttaccaact caatggagct cactgcagat atccaacaag cagcgaacga taccaacact       780
     gtggaagctt ctgatagctg caaccactac actcatcgta ctaaggtgac tagtgatatt       840
     agtgctgggc catgccgaac aaatacaaaa tcatcttctg atcctgtttt gaaccatgat       900
     accacgaaca ctggcatagc agaaaaagta tggttatact tcacgaacat caaatcgcat       960
     gtctccgctg atgatatgcg tgtgtggctt aaagctgtgc tgccaaccga caacatagat      1020
     gtttaccgtc tcacgaaaaa gggtgcaaac cttgatttga tgtcctttat atcgtttaaa      1080
     gtgagtattc ctaaatcact taaggatctg gcgcttcaat ctactatttg gccagtttca      1140
     cttactgttc gtgagtttgt tgatcgtggc ctaccaaagc aacgtataca tgaaagggcc      1200
     cgatttgacc cttctgcgct tacttcgcat cgttcaagca gtgcaaattg ctcttcagct      1260
     gcgccaaaaa gcaccgctca tccggatcat tttttggatc atcgatcgcc atccccacag      1320
     cgcgggaatc aatcactatc ccagatgacc gagatcctag aggctatcca accggagttt      1380
     cctcccacac cccctcagtt atcaccgggg gtggggcttc aatcacagaa caatctcagc      1440
     aacacgaatc gctcaccaca gatcagcccg tttgccaaac ggatagctca caattaatag      1500
     acccttcgtg atctattacc aaaatgttcg aggccttcgc accaaatata atgaattgcg      1560
     cctttctgcg aatgaatcag ggtttgaaat gcttgccctt actgaaacct ggttaaatga      1620
     atcgattcca tccaatatgg tcctggatag tgattcttac aatatatacc gttgcgatcg      1680
     cagcaggtta aacaatgaac gatcgcgtgg gggtggtgtg ctgcttgcat gttccagtcg      1740
     ttatccgtct gtggcactta acatgaatca acctacgctt gaagctttat gtattcgtgt      1800
     ttcttttcct aagtttcgtc tttatgtggg gattgtttat gtgccaccgt atttgagcag      1860
     cgaccgcaac tatttcgaat ccctttctgc tttcatcagn gatgcataca tgcatatgaa      1920
     accgaatgat catcttatcc ttcttggcga cttcaatcaa ccggcgttag ggtggtcgcc      1980
     tgcagccgca gtaaggtcag attcatcttt acctatgaga cattatgtgc cacatatctc      2040
     tttgaattca tccagttcct gctttttgga tgtgttaaat ttgcatgaac tctatcagct      2100
     gaacggggtg cataaccatt caaatcatta tctggacctg gtgctctcta actctgctgc      2160
     tgctgcttgt tcttctgtgt atcctgcttc gtcactgctc ctgccccagg atgcccatca      2220
     tcctgctctg gaaattgcgt taccgtcttc tttatttagg gctagtaggg ttaggaatga      2280
     attgccttct gctcctaatt cattgagtgt tcgttataat tttcgtctta cagactatcg      2340
     taaacttaat tctattctat ctcgtgccga ctggtctttt ttttatcaat gtacatcggt      2400
     cgacgaggct gtccaatcgt ttaatgcttt gttaacctct gcactccttt catgtacacc      2460
     tatttttcgt tcccctccta atcctccctg gtccaatcgt actcttcgca acctgaaaaa      2520
     ggatagaatg aaatatctta ggaggtatcg tctgaaccga tctgctttca actttcgttt      2580
     atttaagtac gctgcctctg cgcatcgact atacaacagg gctcgttttg aggcctattc      2640
     gagtagactg caatcgcgtt tccgttctga tccagcatcc ttctggcaat ttgttaggat      2700
     tcgaagaggg tgcaatacgt tacctaatga aatggtactt gattctcgaa ctgcctctac      2760
     gcctgttgag atctgtgagc tattctctgc acatttttcc caaatgtttg agccaccggt      2820
     tagtgaccct aaccttattg agggtgggct actctacacg ccagagaact taattaatct      2880
     ctccgatatt tcggttagct ctgaaacagt tgtacaggtg ttatttgggt tgaaacgttc      2940
     ttttactcct ggtccagatg gcattcctgc ctcagtttta ataaactgta aggacgtgct      3000
     tgctccacac cttgctaaaa ttttcaacct ttcactttct ctcggggtct ttcctgctct      3060
     ttggaaatcc tgttggcttt ttccggtaca caaaaaggga tgccgtagca ttgtctctaa      3120
     ttatcgtggg ataactcaaa catgtgccac agccaaaact tttgagctat gtatctttcc      3180
     aaccatactt catagttgta gttccgctat tagccctaaa cagcatgggt ttatgcctgg      3240
     taggtctact tctactaatc tcatgtcttt tgttaccaat attttcagat cttttgaggc      3300
     aggtacccaa cttgatgcaa tatacactga ctttcatgct gcatttgata gtttgcccca      3360
     ctctttacta ttagctaaac tatctaaact tggttttggt gatggcatta ttagctggct      3420
     gtcctcatac ttaagtaatc gatcttgcag ggttaaaacc gggtcgtact tatctgagga      3480
     gtttttttgt acgtcaggtg tccctcaggg ttgtgtgcta agtccacttc tgttttcttt      3540
     gttcatcaat gatgtctgta atgttttacc tcctgatggt catctccttt atgcggatga      3600
     tatcaaaatc tttttacctg tgtcctcttc ttctgattgt atgagtcttc agcattacct      3660
     taatgcattt gttcattggt gttcatccaa cttacttcgc ttgtgccctg ataaatgttc      3720
     tgttatttct ttctctcact ctctttctcc tatttcattt aactatactc tctctaactc      3780
     gtctctctct cgtgttttgt ccatccgtga ccttggtatt atactcgaca gtcgtcttaa      3840
     ctttaaactg cagcttgatg aggttctact aaaagctaat cgaactcttg ggtttatttt      3900
     acgttttacc tctattttta gagatcaaag cttcttaaga aacctttatt atgctctggt      3960
     aaggcctctt cttgaatatg ctagcatcat ctggaatcct cctactattg atggctgttc      4020
     gagaattgaa agcattcagc gcctttttac cagggttgct tttcgtcgtt tgttcggtgc      4080
     tgcctcacta cctccctatg aaacgcgatt gcagttattc aatcttcact ctttaagctt      4140
     ccgccgccaa gtgtctcagg catgttttat tggtggctta ttactttctg atactgatgc      4200
     tcctgattta ctctcgtcca tctcgttgta tgttccctct cgttcccttc gtcctcgtga      4260
     tcctctgtca attgaaacac gtcatactct ttatactttc aatgatccta ttctatcctg      4320
     tttcaggttg tttaaccact tttactatct ctttgatttc gactcctctc tcaactcttt      4380
     ccgtaaccgt attttttctt ctaattctct ttaattattc ttctaagttt cattaagttt      4440
     tgatagtctc tacgctctac ctatgttttt ttttctttaa tttttttgct aggtctagac      4500
     tagtttagtt aggcttagtt tttcatgaat tattttgttt atttgttagg gtttatttag      4560
     ttttaagtct gccttattta gccttgatgg cggatattgt attaataaat gaaatgaaat      4620
     gaaatgaaat gaaa                                                        4634
//
ID   TABOR_DA-I  repbase;    DNA;    INV; 6388 BP.
XX
AC   .
XX
DT   13-OCT-2005 (Rel. 10.10, Created)
DT   05-MAR-2011 (Rel. 10.10, Last updated, Version 2)
XX
DE   TABOR_DA, an endogenous retroviral element from Drosophila
DE   ananassae.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Interspersed repeat; reverse transcriptase;
KW   gag; integrase; TABOR_DA-I.
XX
NM   TABOR_DA-I.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6388
RA   Gentles A., Kapitonov V.V. and Jurka J.;
RT   "TABOR_DA, an endogenous retrovirus from Drosophila ananassae.";
RL   Repbase Reports 5(10), 339-339 (2005).
XX
DR   [1] (Consensus)
XX
CC   451 bp LTRs deposited as TABOR_DA-LTR. This internal sequence has
CC   two overlapping ORFs. The first is weakly similar to spumavirus
CC   gag protein. The second putatively encodes reverse transcriptase
CC   and integrase functions and contains a single domain related to
CC   retroviral aspartyl protease. 4 bp target site duplications.
XX
FH   Key           Location/Qualifiers
FT   CDS           1242..2576
FT                 /product="TABOR_DA-I_1p"
FT                 /translation="MEWNKLYTELSNIKTNFDRSYKSLTQNRPIQTNTVRK
FT                 HVEILVECFNEARMLIHKHRERLNQDHWSQVSKLLIRLRSNLIFVKQKYSL
FT                 EISIPTVLNTPIAVDTAPDSESTEANESESEEIPKVNLKIEDEDLNNLTIP
FT                 AVYTDLDNSADSDTSSVIENKIINFVTMAQSNIDFINTASKLIPVFDGKAE
FT                 NLTSFIDALQIIESIKGEHEELAVSIIKTKLKGVARNLIGNETTITEVISK
FT                 LRGNVKGETVEVLSAKLMNLQQRNKTANQYTQEIEQMTKALEGAFITDGLP
FT                 LELARSYSTQHAVKAMTKNCTIDKVKLIMQAGTFSTMNDAVSKFVNSCTEA
FT                 TGQSNTVLYFKNYPQRGSYRGRGNYRGNSRGNYNNYNNNYQNNNNNYNNQN
FT                 NRGGRGQYRGNYRGGGNSYQGPNGNNQSNVRIAQNTDQNTSGNSQSPLNTQ
FT                 "
FT   CDS           2534..6199
FT                 /product="TABOR_DA-I_2p"
FT                 /translation="PKHFGKLPKPFKYSIVKEVRVHTINLSQNIFVSFFNV
FT                 ATGKELIFLIDTGADISILKETSDTFQNIQDDHIIDIKGISQEITKSKGLV
FT                 SLEIQTTKYIIPHDFHILNSHFPIPCDGIIGIDFIKKFNCQLDFKPSEDWL
FT                 IIRPNNLKFPINVPITHSSGNNSILLPARSQVIRKIELNLKEDSVFIPNQE
FT                 IQHGIYIANTIATSNNAFIRLLNTTNTNQVVSTDNLTYEPLSNYDVVNTNS
FT                 DNRKKSVLSQLSKNFPPQFKSQLSSLCTQYSDIFGLETESITTNNFYKQKL
FT                 RLKDDEPVYIKNYRSPHSQVNEIQKQVGKLISDGIVEPSVSEYNSPLLLVP
FT                 KKSSPGSNVKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCL
FT                 DLMSGFHQIELEKGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIA
FT                 FSGLEPSQAFLYMDDLIVIGCSEKHMLKNLTDVFEKCRRYNLKLHPEKCSF
FT                 FMHEVTFLGHKCTDKGILPDDKKYDVIMNYPVPHDADSARRFVAFCNYYRR
FT                 FIKNFADYSRHITRLCKKNVPFKWTDECENAFQYLKTKLMEPTLLQYPDFT
FT                 KEFCIITDASKQACGAVLTQNHNGLQLPIAYASRAFTKGESNKCTTEQELA
FT                 AIHWAILHFRPYIYGKHFLIKTDHRPLIYLFSMINPSSKLTRMRLELEEYD
FT                 FTVEYLKGKDNYVADALSRITIKDLQNITRNILKVTTRYQSRQKFRAENQK
FT                 QELPMQSLNKASKPNVYDVINNDEVRKVVTLQIKNSLCLFKQGRKITARYD
FT                 VSDLYTNGVIDLDQFFQRLEMQAGIHKISQLKVAPWENIFEYTSVDNFKLM
FT                 GNKILKTLRVALLNPVTKITNLKEKEAILSTFHDDPIQGGHTGISKTLAKV
FT                 KRHYYWKGMSKDITEYVRKCQKCQKAKITKHIKTPLTITDTPINAFDRVIV
FT                 DTIGPLPKSENGNEYAVTLICDLTKYLVAIPVPNKNANTVAKAIFESFILK
FT                 YGPMKTFITDMGTEYKNSIIDDLCKYLKIENITSTAHHHQTVGTIERSHRT
FT                 FNEYIRSYISVDKTDWDVWLQYFVFCFNTTPSMAHTYCPYELVFGKTSNLP
FT                 KHFNSIDSIEALYNIDDYAKESKYRLEVAYKRARVMLETNKNRNKILYDHK
FT                 VRDIDISVGDQVLLKNETGHKLDPKYTGPYIVTEIGDRDNIIITNNKHRKQ
FT                 TVHKDRLKIFIS"
XX
SQ   Sequence 6388 BP; 2499 A; 1150 C; 1057 G; 1682 T; 0 other;
     tggcgaccgt gacatgagtc ctggaggact taggaagata ttcggaacca aggctaaaag        60
     gaatcaaagg attgaaaatg caaaaggaaa aatacatcat acgagaaaaa cgtctgagtg       120
     agtagagtgt gcacaatggt acgtggaggt ctaaagaaaa aaatcaacaa aagaatagcc       180
     cgcataaagt ggctactatt tgctcaatca actccgcccc catggacgac ggcgcaaaag       240
     ctatacaacg agcttgaatt cttaagagaa accctccaaa acaaagtacc acagagcaca       300
     actcgctcgg aaaatcaaat taaagttata aaccaaaaac taatatcgac acaaaatatt       360
     tccaagcctc tgccaaaacg accacaggtc tgcccgaccg actgccccgg acctctcaac       420
     tctgcagcat gcaattgcac atgcgtgaag ccgaagaata aagcgaagac caacccaaaa       480
     caatagcaag cgtgggaggc acgaccgcca cctgcgccct cgagggagcg tcagcgcagc       540
     caaaccggcg acgaccagct gacgtggaag gaaggaccac caaacctggg aaaaaatttt       600
     tttttttcat gcactgcgct gcatattttt tttgattgca ctgcgatgca tatttttttt       660
     atattcataa tataatattt tgtaaaattg agcggaacct tttctgctcg attagacgtg       720
     tagcctgtaa agctacgcaa aaaactaggt aggaagctgt taacttaaat gcgcagtaat       780
     gcgataagta aatttccaac agaagatctt tataatttta atgaaacaca aataaaagta       840
     tatgcaaaac ccaccaaaat gacgttggac ataaaaacag tggattccac tgccaatgtc       900
     atcaacaagg tagaatctac caacgttgat ctatattggg tacatgtact tttagtaatc       960
     attgtcgtta ttatgtgcgc cgctgttttt tataagattt acaagctgca taataattgt      1020
     ctgaaaaaaa ggtatatgag ccggggaaat gacctggata aaatataagc agcaaataaa      1080
     taaaaataag gaaaaaatat atatagcaca aacaacagat tacacataaa tgttaacacc      1140
     taaaaatcta agaaaatgaa ataaaaaaaa aaataaaata aaataataaa tataaaatat      1200
     gtcaatatat tcctctcaca aagtacggcc aaactaaagg catggaatgg aacaaattat      1260
     acacagaatt atcaaacatt aaaactaatt ttgacagatc atataagtca ctaacccaga      1320
     atagacctat ccaaacgaac actgttagga agcatgttga aatattagta gaatgcttta      1380
     atgaagcacg aatgctaata cataaacaca gggaaaggtt aaatcaagat cattggtcgc      1440
     aggtatcgaa acttttgatc cgactacgat ctaatttaat atttgttaaa caaaagtaca      1500
     gtttagaaat atcgatacca accgttctaa acaccccaat agcagttgac actgcacctg      1560
     actcagaatc aacagaagcg aatgaatcag agtcagaaga gattcccaaa gtaaacctca      1620
     aaatagagga tgaagatttg aataatctta ctattccagc ggtatacact gatctggaca      1680
     attcagcaga ttcagatacc tctagtgtaa tagaaaacaa aataattaac tttgtaacaa      1740
     tggcacaatc aaatattgat tttattaata cagcatccaa gcttatacca gtttttgatg      1800
     gtaaggctga aaatttaacg agtttcattg atgctttaca aataatagaa tcgataaaag      1860
     gcgagcacga agaattagct gtctccataa taaaaacaaa gctaaaaggt gtcgccagaa      1920
     atctaatcgg taatgagaca acaattactg aagtgatttc taaactaaga ggcaacgtca      1980
     agggcgaaac tgtagaagta ttatcagcga agctgatgaa cctacagcag cgcaataaaa      2040
     ctgctaacca atatacccaa gaaattgagc agatgacgaa agcattagaa ggtgcattta      2100
     taacggatgg tttaccttta gagctagcca gaagttattc cacgcagcat gcggtcaaag      2160
     caatgactaa aaattgcaca atcgataagg tgaaacttat catgcaagct ggcaccttta      2220
     gtactatgaa cgatgctgtt tccaaatttg tcaatagttg caccgaagca actggacagt      2280
     caaatactgt cctatatttc aagaattatc cacagcgcgg ctcatatcgc ggacgtggaa      2340
     attatagagg taattctcgt ggtaattaca ataactacaa caacaattac caaaataaca      2400
     acaataacta caacaaccaa aacaacaggg gaggacgagg ccaatataga ggaaactata      2460
     gaggcggtgg aaactcgtac caaggcccca atggcaataa tcaaagcaat gtcagaattg      2520
     cacaaaatac tgaccaaaac acttcgggaa actcccaaag ccctttaaat actcaatagt      2580
     aaaagaagtc agagttcaca ccattaatct cagtcaaaat atattcgttt catttttcaa      2640
     tgtagctact ggaaaagagc ttatcttttt aatagataca ggtgcagaca tttccatttt      2700
     aaaagaaact tcggatacct tccaaaacat ccaagatgat cacatcatag acataaaagg      2760
     cataagtcaa gaaataacca aatccaaagg tttagtttct ttggaaatac agacaactaa      2820
     atacataatt ccacacgatt ttcatattct aaattcacat ttcccaattc catgcgatgg      2880
     aataataggc atcgacttta taaaaaaatt caactgtcaa ttagacttca agccatctga      2940
     agattggctt ataattagac ccaataactt aaaatttcca attaatgtac caataactca      3000
     tagttctggc aataattcaa tacttctgcc agcaagatcc caagttattc ggaaaattga      3060
     gcttaactta aaagaagaca gtgtatttat tccaaatcag gaaattcagc atggcattta      3120
     tattgcaaat accatagcaa catctaataa tgccttcata agactactaa acacaacaaa      3180
     taccaaccaa gtagtcagta ctgataacct aacatatgaa ccactttcga actacgatgt      3240
     agtcaataca aattcagaca ataggaaaaa atccgtacta tcacaacttt caaaaaactt      3300
     ccctccacag tttaagtcac agctttctag cttatgcacc cagtatagcg atatattcgg      3360
     attggaaacc gaatcaataa ccaccaataa tttttataaa cagaaattga gattaaaaga      3420
     tgatgaaccc gtatatataa aaaactatcg aagcccacat agtcaggtga acgaaattca      3480
     aaagcaagta ggtaaattaa tctctgacgg gattgtcgaa ccgtcagtat ctgaatacaa      3540
     tagcccattg ttacttgttc ctaagaaatc atcccccggg tcaaatgtta agaaatggcg      3600
     attagtaatt gactaccgcc agataaataa aaaattacta tctgataaat tcccattacc      3660
     tagaattgat gacattttag atcaactagg tcgagcaaaa tacttttcat gtcttgactt      3720
     aatgtcagga ttccatcaaa ttgaactcga aaaaggctca agagatataa cgtccttttc      3780
     aacgagcaac ggctcatatc gtttcacgcg attacctttt ggattaaaaa tagcccctaa      3840
     ttcgtttcaa agaatgatga ctattgcgtt ctctggtcta gaaccttctc aagcattcct      3900
     ttatatggat gacttaatag taattggctg ttccgaaaag catatgctta agaacttaac      3960
     agatgttttt gagaaatgta gaagatacaa cctaaagtta catccagaaa aatgttcatt      4020
     ttttatgcat gaagtgactt ttctaggtca taaatgcact gataaaggaa tacttccaga      4080
     tgacaagaaa tacgatgtca ttatgaacta cccagttccg cacgacgcgg acagtgctag      4140
     acgtttcgta gcattttgta actattatag acgttttata aaaaatttcg ccgactattc      4200
     acggcacata acaagattat gtaaaaagaa tgttcctttt aaatggacgg atgagtgtga      4260
     aaatgcattt caatacttaa aaacaaaact tatggaacct accttgctac aatatccaga      4320
     tttcactaaa gaattctgta taataacaga tgcaagtaag caagcatgtg gagcggtttt      4380
     aactcaaaac cataatggac tccaacttcc cattgcatac gcatcaagag catttacaaa      4440
     aggtgaaagt aacaaatgta ctactgagca ggaattggct gcaattcatt gggcgatatt      4500
     acatttcaga ccatatatat atggaaagca tttcttaata aaaacagacc acagaccttt      4560
     aatatacctc ttctcaatga tcaatcccag ttctaaactg acacgtatga ggctcgaact      4620
     agaagaatac gattttacag tcgaatattt aaagggaaaa gataattatg tagctgatgc      4680
     tttatcaagg ataaccatca aagatctaca aaatataact agaaatatat tgaaagtcac      4740
     taccagatat caaagtagac aaaaattccg cgcggaaaat caaaaacaag aattgcctat      4800
     gcaatcttta aataaagctt ctaagcccaa cgtatacgac gtcataaaca atgatgaagt      4860
     acgtaaagta gtgaccttgc agataaaaaa ttcgttatgt ttatttaaac aaggcagaaa      4920
     aattactgca agatatgatg ttagcgattt atatactaat ggagttattg acttagatca      4980
     atttttccaa aggcttgaaa tgcaagccgg tatacataaa atcagccaac tcaaagtggc      5040
     accgtgggaa aatatctttg aatatacttc agtagataat tttaaattaa tgggcaataa      5100
     aatcttgaaa acattaagag tagcgctact caacccggtg accaaaataa caaatttaaa      5160
     agaaaaagaa gcaattttgt ctacatttca tgatgatcca attcaaggag gtcatactgg      5220
     catatcaaaa actttggcca aagtaaaaag acactattac tggaaaggca tgtctaaaga      5280
     tataactgag tacgtaagaa aatgtcaaaa atgccagaaa gccaaaataa ctaaacacat      5340
     aaagactcct ttaacaatta cagacacacc aataaacgct ttcgacagag tgatagtgga      5400
     caccattggt ccattgccaa aatcagaaaa tggcaatgag tatgcagtca ctttaatatg      5460
     tgatttaact aagtatttag ttgcaatacc tgttccaaat aaaaatgcta atactgtcgc      5520
     taaagcaata tttgaatctt ttattctgaa gtacggtcca atgaagacgt tcattacgga      5580
     catgggaaca gaatataaga attcaattat agacgattta tgcaaatatt taaagattga      5640
     aaatattaca tccacagcac accaccacca gacagttgga acaatagaaa gaagtcatag      5700
     aactttcaat gagtacatac gatcttacat atcggttgat aaaactgatt gggacgtatg      5760
     gcttcaatat tttgtctttt gtttcaacac gaccccatct atggcacaca cttattgtcc      5820
     atatgagcta gtattcggta aaacaagtaa tttaccgaaa cattttaata gcatagatag      5880
     tatagaagca ctatataata tagatgacta tgctaaggag agtaagtata gattagaagt      5940
     agcctataaa agagctagag ttatgttaga aacaaataag aatagaaata aaattctata      6000
     tgatcataaa gtaagggata tagatatatc agtaggtgac caagttttat taaaaaacga      6060
     gacaggtcat aagttagatc ctaaatatac aggtccgtat atagtaacgg aaataggaga      6120
     tagagacaac attataataa caaataataa acataggaaa caaacagttc ataaggatag      6180
     gttaaaaatc tttatttcat aaattgtact tagtatggcc atacaaagac acacctatat      6240
     aaataaataa ataaacatat atttttttta taatttcatt ttcttcaatt ctaataaaat      6300
     aaaaaaaaaa aagggaatgt attaattaga aatttttatt ataaaaataa cttcattata      6360
     ttacgttatt tttcaaaagg agggagat                                         6388
//
ID   TABOR_DA-LTR repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   13-OCT-2005 (Rel. 10.10, Created)
DT   05-MAR-2011 (Rel. 10.10, Last updated, Version 2)
XX
DE   TABOR_DA, an endogenous retroviral element from Drosophila
DE   ananassae - LTR sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Interspersed repeat; reverse transcriptase;
KW   gag; integrase; TABOR_DA-I; TABOR_DA-LTR.
XX
NM   TABOR_DA-LTR.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-451
RA   Gentles A., Kapitonov V.V. and Jurka J.;
RT   "TABOR_DA, an endogenous retrovirus from Drosophila ananassae.";
RL   Repbase Reports 5(10), 340-340 (2005).
XX
DR   [1] (Consensus)
XX
CC   451 bp LTRs corresponding to internal region deposited as
CC   TABOR_DA-I.
XX
SQ   Sequence 451 BP; 152 A; 104 C; 80 G; 115 T; 0 other;
     tgtagtatgc acatatattg aatacccact gtaccgaaga tacttaaagg gtacacactg        60
     taacactttg ttgcagtgtt tacatatttc aaaatcccgg tcataactcc taagtggccg       120
     aaatatgatc cgatcgttat ggattagccc acacacggta aatgctagcg tcggcataat       180
     tgcaacgaac ggacagcata tacatacctc tcgcgcttac acttgagagc gcatagcaat       240
     atacataagt atatagatac gtagccgtct ctctgccgct gcctgcgagc agcgcagcta       300
     tgagacttag ccttagttag acttaaagaa tattgtaaaa gagcagagac atttcgatcg       360
     ttggagcggc accattgctg ctccaataaa taaactccaa taaataaacc ccaaacatat       420
     ttcaatacaa aacaaaacca aacttatttc a                                      451
//
ID   TABOR_I     repbase;    DNA;    INV; 6336 BP.
XX
AC   AC007146;
XX
DT   30-JUN-1999 (Rel. 4.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   TABOR_I is an internal part of retrovirus TABOR.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; LTR-retrotransposon; env;
KW   internal portion; TABOR group; TABOR_I; TABOR_LTR.
XX
NM   TABOR_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6336
RA   Kapitonov V.V. and Jurka J.;
RT   "TABOR_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   GenBank; AC007146; Positions  115856  122191.
XX
CC   TABOR_I is an internal part of TABOR endogenous retrovirus
CC   flanked
CC   by TABOR_LTR long terminal repeat.
CC   TABOR, DM412, MDG1 and BLOOD form separate TABOR-group of
CC   Gypsy-like
CC   retroviruses. They all have non-specific 4 bp-long duplications
CC   of target site; their LTRs have canonical 5'-TG and CA-3'
CC   termini;
CC   PBS starts immediately after LTR. It's possible that TABOR-group
CC   retroviruses can be infectious interacting with Gypsy-like
CC   elements
CC   which encode envelope. The TABOR virus was active
CC   recently since its provirus is flanked by identical LTRs and its
CC   ORFs are not saturated with false stop-codons.
XX
FH   Key           Location/Qualifiers
FT   CDS           1025..2341
FT                 /product="TABOR_I_1p"
FT                 /translation="MEWNELCKNITRIRNEFEKSHKCLSQNRPILGPTTKK
FT                 HANILVNSFNEARILVYDNKERLNPDHWSQVSKVLIKLRSNLLSVKLKLGL
FT                 DISIPTILNSPIKIESDEQTETEIEDEDLNNLTIPAILTLAELTEEELAES
FT                 DIEETETKSVIMVDEAAAQRAYIKDISTAIPEFDGKKINLRRFITAIKLVN
FT                 LTKGPHEAIAIEVIKSKIIGTTLYRVQNEVTIDAIIRKLEEVVVGETTDVV
FT                 RAKMANVYQKGKTATQFTNEIENLRKSLESSYIDEGLQPEHAIKFSTKEAI
FT                 NTMTKNCDHGKLKAILEAGTFKTMDEAISKYIHCSTEMTGSASSVLFYKRG
FT                 QGSYTRGNYRGRGNGRGGNNRNNYNQNTGQYNNFNNYNNSNGRGRGGYREY
FT                 NYQNRGGGNYNNQNRNFSSYSQNGNVRHAQGTSENQQAPLGHQEQ"
FT   CDS           2281..5970
FT                 /product="TABOR_I_2p"
FT                 /translation="CQTCTRHVGKPAGSLRASRTVKQKVHTINLNLNIFIK
FT                 VKNEHTNKILTFLVDTGADISVIKENSDELLNLDHNNITQITGIGKGSINS
FT                 IGLTLLEMRTGNYIVPHNFHVVDDNFPIPGDGIVGIDFIKTFNCQLDFTTE
FT                 SDFFILRPNNIKQAIQIPIFHNIDNTEITIPSRCEVIRQITVSSVDNQILI
FT                 PNQEIEDGVFVGNSISDSKNTYIRILNTTNSNKILNVNKINFEPLTSYKIA
FT                 DLNDSIRAESILSRLKKNFPSAHKKMLTELCSQYTDIFGLETEPITTNKFY
FT                 KQKIRLRDDEPSYIKNYRTPHSQQAEISRQVTKLIEDKIVEPAVSEYNSPL
FT                 LLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKY
FT                 FSCLDLMSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRM
FT                 MTMAFTGLEPSQAFLYMDDLIVIGCSEKHMTKNLTNVFELCRKNNLKLHPD
FT                 KCSFFMSEVTFLGHKCTDKGILPDDTKYDAIQRYPVPTDADSARRFVAFCN
FT                 YYRRFIQNFADYSRHITRLCKKNVKFEWTADCQHAFEHLKKQLMNPTLLKY
FT                 PDFSKEFCIITDASKEACGAVLTQNYNGIHLPVAYASRSFTKGESNKSTTE
FT                 QELSAIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMRLDL
FT                 EEYEFTVEYLKGKDNYVADALSRITIDQLKNISKQVLKVTTRNQSRQESCA
FT                 GKGNKNDKVELPKQTTQEASKPKVYGVINNDEVRKVVTLHVNNMICFFKHE
FT                 KKITARYNVEDLYINGTLDLGQFFHRLEKQAGMHNINQLKMAPWENIFDNI
FT                 SIDTFKKMGNKTLKLLRVALLNPVTLVNTKKEKEAILSTHHDDPTQGGHAG
FT                 ITKTLARIKRHYFWKGMTREITEYIRKCPKCQKAKIMKHTKTPLSITETPI
FT                 SAFDRVIVDTIGPLPKSENGNEYAVTLICDLTKYLVTIPIANKSANTVAKA
FT                 IFESFVLKFGPMKTFISDMGTEYRNSIIKDLCKYLKVENITSSAHHHQTVG
FT                 TVERSHRTFNEYIRSYISVDKTDWDVWIKYFEFCFNTTPSMAHNYCPYELI
FT                 FGKTCNLPKHFNSTDRIEPIYNIEDYPKESKYRLEVAYNRARIMLEEQKKK
FT                 NKELYDLKLNDISISIGDKVLLKNETGHKLDFKYTGPYTVVKIEERDNIVI
FT                 SNDKKKPQTVHKDRLKLFSS"
XX
SQ   Sequence 6336 BP; 2600 A; 1081 C; 1098 G; 1557 T; 0 other;
     tggcgaccgt gacatggtca cttaagcctg taaaacaata ataaaaagaa atatataaaa        60
     gttaaaatgc gaacagtgac cattaaaaaa taaaattgtg acaattgatc aaacccagac       120
     gacaacagaa gccgcaaact ggaggactct gctcctatcg agcaaaggga cgcacctact       180
     ctacaagagg cactagaggt gtgtccaaac gatggaccac gcccactcac aatagctgag       240
     tatagggcaa gaagacagcc gaaaccaaaa ataaagaaga aaagaagcgg caaaaggatc       300
     aagcttcttc aacaacggag attaataaag gacctaataa agacggcaac tacggaggaa       360
     gagaaaacta accaagccaa aaatctggaa gcgattgaag ccaaattgtg cagtggtgcg       420
     caataacgca gttgaggctg tatttaatac caatgcccca atctgcctta atattaaaaa       480
     tacatacctc aagccgatgc gtgaaaacgc tgcttgaaaa atactaatct ctgttaggct       540
     tttactaaaa acatgtgtac ggtattgaat tatatagagc aaaacattgt aaaccgtaca       600
     catgccctct aactaacttt ttcttggaca gacatacgtg tagggagaaa ttatagcaat       660
     atacaatttt taatcaaaat ttaataaata aataaataat aataatcgtt caattaacaa       720
     ctatgggttg gttcggatct gacgatagtc agaccaaaga caacacggct aatgtcgtga       780
     acaacgtcaa aattgtagat cacacagaag atattcaagc actgtgggtt ttactcctaa       840
     ttttgacaat tacaagtgtg gcccagttcc ttctgacgtt gtacataaaa cacaacaaaa       900
     tattaaaaag aagatatatg agtagggcga ataatctaga cagggtttaa aagaaaaaaa       960
     aaaaatatat tttaaagaat gagtatataa atatatacta acaagtagga atatataaaa      1020
     tagtatggaa tggaacgagt tatgtaaaaa cataacaaga ataagaaacg aatttgaaaa      1080
     atctcataaa tgtttgtcgc aaaatagacc tattttagga ccgacaacaa agaaacatgc      1140
     aaatattctg gtaaattcct tcaacgaagc acgaatacta gtgtatgata acaaggaaag      1200
     actaaatcca gatcattggt ctcaggtatc gaaagttctc ataaaactta gatcgaactt      1260
     gttatctgta aaattgaaac ttggtttgga tatatcaata ccaaccattt taaattcgcc      1320
     aataaaaata gaatcggacg aacaaacaga aacagaaata gaagacgaag atttaaacaa      1380
     cttaacaatt ccagctatat taacactagc tgaattgacg gaggaagaat tggctgagtc      1440
     agacatagaa gaaacagaaa caaaatctgt catcatggtg gacgaagcag ctgcccagag      1500
     ggcatacata aaagacattt caacggcgat tccggaattt gacggtaaaa agatcaattt      1560
     gcgtagattt atcacggcaa tcaagttggt taacctgact aagggaccac atgaagctat      1620
     tgccattgaa gtgattaaat caaaaataat cggaacaaca ctctatagag tacagaatga      1680
     agttacaatt gatgccataa tcaggaaatt agaagaagtg gtcgtaggag aaacaacgga      1740
     cgtagtaaga gcaaaaatgg caaatgttta ccaaaaaggt aaaacagcca cacaatttac      1800
     aaatgaaatt gaaaacctac gcaagtctct tgaatcttca tatatagatg aaggattgca      1860
     accagaacat gctatcaaat ttagcacaaa ggaagcaatc aatacaatga caaagaattg      1920
     cgatcatgga aaactgaaag caatcctaga ggcaggaaca tttaagacaa tggacgaagc      1980
     aataagtaaa tacatccatt gcagcactga gatgacagga agtgcaagtt ccgttttgtt      2040
     ttacaagaga ggacaaggaa gttacaccag aggtaactac cgaggacgag gaaatggtcg      2100
     aggtggtaat aatagaaata attataacca gaacaccggc caatacaaca actttaataa      2160
     ttataacaat agcaatggca gaggacgagg aggatataga gaatataact accagaacag      2220
     aggcggtggt aactataaca accaaaaccg caatttctca agttatagcc aaaatggtaa      2280
     tgtcagacat gcacaaggca cgtcggaaaa ccagcaggct cccttagggc atcaagaaca      2340
     gtaaaacaaa aggttcatac catcaatctt aatctaaata ttttcattaa agtaaaaaat      2400
     gaacacacaa ataagatact tacatttcta gtagacacag gcgccgatat atcagtcatt      2460
     aaagaaaact cagatgaact tttgaatctt gatcataata atataacaca aattacagga      2520
     attggaaagg gttcaataaa ttcaataggt ttaacacttc tcgagatgag aaccggtaac      2580
     tatatagtac cgcacaattt tcatgttgtg gacgacaatt ttccgatccc tggtgacgga      2640
     atagttggaa tcgacttcat aaaaacattc aattgccaat tagattttac tacagaaagt      2700
     gattttttca ttctaagacc aaacaatatt aaacaagcga tacaaatacc aatttttcat      2760
     aatatcgata acactgagat aaccatacca tctcgttgtg aggttattag gcaaattacc      2820
     gtaagttcgg tggataacca aattctaata cccaatcagg aaatagaaga tggtgtattt      2880
     gtcggaaatt cgatatcaga ttcaaaaaac acgtacatcc gaatactaaa cacaactaac      2940
     agcaataaaa ttttaaatgt aaacaaaatc aattttgaac cattaactag ctacaaaata      3000
     gcagacctaa acgactccat aagagccgaa tcaattttaa gcagattaaa gaaaaacttt      3060
     ccatctgcac ataagaaaat gttgactgaa ctgtgttcac aatatactga tatttttgga      3120
     ttggagacag agccaatcac tacaaataaa ttttacaaac aaaagataag attgagagat      3180
     gatgaaccaa gctatattaa gaactataga acaccccatt cacaacaagc cgaaatatcg      3240
     agacaggtaa ctaaattaat agaagacaag atagtagaac cagctgtatc tgaatacaat      3300
     agcccattat tgctagttcc aaagaaatcc ttaccggatt caaaagaaaa aaaatggcgt      3360
     ttagtgatag actatcgcca aataaataaa aagttgttag ctgacaagtt ccccttgcca      3420
     agaatagatg acatacttga tcaattaggc cgagcaaaat atttctcgtg cctggatctt      3480
     atgtcgggat tccatcaaat agagttagaa gaagattctc gaaatataac atccttttct      3540
     acgagcagtg gctcttatcg cttcacgcga ctaccatacg gattaaaaat agctccaaat      3600
     tcctttcaac gaatgatgac aatggcattt acaggtctgg aaccatctca agcatttctg      3660
     tacatggatg acttaattgt cataggctgt tctgaaaaac acatgaccaa gaatcttaca      3720
     aatgtttttg aactatgcag gaaaaacaac ctcaaactgc atccagataa gtgctcattt      3780
     ttcatgagtg aagtcacttt tcttggacac aaatgtactg ataaaggcat attgcctgac      3840
     gatactaaat atgatgctat acagagatat ccagttccta ctgacgcaga cagtgccaga      3900
     agattcgtag cattttgtaa ctattataga cgttttatac aaaattttgc agattattcc      3960
     cgtcacataa caagattatg taagaaaaat gtaaagttcg aatggacagc tgattgccag      4020
     catgccttcg aacacctgaa aaaacaacta atgaatccaa ctttgctgaa ataccccgac      4080
     tttagcaaag agttctgtat tataactgat gcaagcaaag aggcatgcgg agcggtactg      4140
     acccagaact ataatggtat ccatttgcca gtagcttatg catcccgtag cttcactaag      4200
     ggtgagagca acaagtcaac aacagagcaa gagttgtcag caatacattg ggcgataaat      4260
     catttcaaac catatatata tggtagacac ttcaccgtca aaacagatca cagaccgtta      4320
     acatacttgt tctcgatggt taatccaagc tcaaaactga ccagaatgag gcttgattta      4380
     gaagaatatg aatttactgt ggaatatctt aagggaaaag acaattacgt agcagatgcg      4440
     ttatccagaa taaccatcga ccaactaaaa aatatatcca aacaagtact taaagtcact      4500
     acaagaaatc aaagtagaca ggaatcctgc gcaggaaaag gaaataaaaa tgataaagta      4560
     gaattgccta agcaaactac tcaagaagct tctaagccca aagtatacgg agtcattaat      4620
     aatgacgaag tacgcaaagt agtgacattg catgtaaata atatgatatg tttttttaaa      4680
     catgaaaaaa aaattactgc aagatacaac gttgaagatt tgtatattaa tggaactctc      4740
     gacttaggtc aatttttcca caggcttgaa aagcaggccg gtatgcataa tatcaatcaa      4800
     cttaaaatgg caccgtggga aaatatcttt gataacattt caatagatac atttaagaaa      4860
     atgggcaata aaacattaaa actattaaga gtagcgctac tcaacccggt gaccttagtg      4920
     aatacaaaga aagaaaaaga agcaatcctg tctacacacc acgacgatcc aacacaagga      4980
     ggacacgcag gcattacaaa aaccctggcc aggattaaaa gacattactt ttggaaaggt      5040
     atgactcggg aaataacaga gtacatacgg aaatgtccaa aatgccaaaa agctaaaatt      5100
     atgaaacaca caaaaactcc tttatcaatt acagagacac caataagcgc atttgacaga      5160
     gtcatagtgg atacgatagg tccactacca aagtcagaaa acggtaatga atatgctgtt      5220
     acacttatat gcgacctgac aaaatatttg gtaaccattc caatcgcaaa taaaagcgca      5280
     aatacagtag cgaaagcaat atttgaatcc tttgtactaa agttcggtcc aatgaagacg      5340
     ttcatttcgg acatgggaac tgaatacaga aattcaatta tcaaagactt atgcaaatac      5400
     ctgaaagtag aaaatataac ttcttcagca caccatcatc agacggtagg aacagtggaa      5460
     agaagtcata gaacttttaa cgaatacatc cggtcataca tatcggttga taaaactgac      5520
     tgggacgtat ggataaaata tttcgaattt tgttttaata ctacaccatc tatggcacat      5580
     aattattgtc catatgagtt gattttcggt aaaacatgca atttaccaaa gcattttaat      5640
     agcacggata gaatagaacc catttataat atagaagact atcctaaaga aagtaaatat      5700
     aggttagaag tagcatataa cagagcaaga attatgctcg aagaacagaa gaaaaagaat      5760
     aaagaattat atgacttaaa attaaacgat ataagtatat caataggaga taaggtgtta      5820
     ttaaaaaacg aaaccggaca taaattagat ttcaaatata ctggaccata tacggtagta      5880
     aagattgaag aaagggataa tatagtaata tcaaatgata agaaaaaacc acaaacggta      5940
     cataaggata ggttaaaatt gtttagttct taaaaaaaaa aaataaataa tatggtggcc      6000
     accagcaaaa aaaaaaaata tatatagaga aaagagttaa ccccacataa gtgcattgaa      6060
     tgtaagaaaa catttttctt ttatcatctt tgatggttga acgattataa actaaaaatt      6120
     tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaccaaa aaaaaacccc caaaaacacg      6180
     tatgtttgta caaaatgttc cttaaatttc cttaacatta aaattacttc cttaaaaaaa      6240
     aaaaaaaaaa aaaaaaaaaa aaaatatata tatataaaat ttttaattat aaaataactt      6300
     cataaaatta cgttattttc caaaaggagg gagatg                                6336
//
ID   TABOR_LTR   repbase;    DNA;    INV; 506 BP.
XX
AC   AC007146;
XX
DT   30-JUN-1999 (Rel. 4.05, Created)
DT   30-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   TABOR_LTR is a long terminal repeat from retrovirus TABOR.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; LTR; TABOR group; TABOR_I; TABOR_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-506
RA   Kapitonov V.V. and Jurka J.;
RT   "TABOR_LTR.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; AC007146; Positions  115350  115855.
XX
CC   TABOR_LTR is a long terminal repeat from TABOR endogenous
CC   retrovirus.
XX
SQ   Sequence 506 BP; 165 A; 111 C; 94 G; 136 T; 0 other;
     tgtaatgtgc acacatatcg aataagcact gtatcaaatc agaacattgg gaacaatcac        60
     attgtagcac ttttgcaaca atgtttatgt aagacttttc agttcccagg catatcttga       120
     gtgctcagca atctgaccac acaagaatgc tattcagacc agaagtgcag agtcagcata       180
     attagcatgc gcgactgctc gatctttatg tccacatgac tctcttagac agcggcgctc       240
     tcgctgccaa agttaagtac ataagagcaa agcaacgtct ctgccgacgg cctctctgcc       300
     ggcgcagacg gattgcattt ggctagcttg gactcttcta gaccaagtac aaggcagtcg       360
     taaaggagtc gtcaaagagc cttcaacatg tcctaattga atattaatga gtcttaacag       420
     aagttacaat tttactgata tcatactgaa tctctatttc aataaaagta atataaagaa       480
     cacaaaaatg cattacaatt attaca                                            506
//
ID   TAHRE       repbase;    DNA;    INV; 10463 BP.
XX
AC   AJ5425818;
XX
DT   15-OCT-2005 (Rel. 10.10, Created)
DT   15-OCT-2005 (Rel. 10.10, Last updated, Version 1)
XX
DE   Jockey-type Telomere-Associated and HeT-A-Related Element
DE   (TAHRE).
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; TAHRE.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-10463
RA   Abad J.P., De Pablos B., Osoegawa K., De Jong P.J.,
RA   Martín-Gallardo A. and Villasante A.;
RT   "TAHRE, a novel telomeric retrotransposon from Drosophila
RT   melanogaster, reveals the origin of Drosophila telomeres.";
RL   Mol Biol Evol 21(9), 1620-1624 (2004).
XX
DR   EMBL/GenBank/DDBJ; AJ5425818; Positions      81   10543.
XX
FH   Key           Location/Qualifiers
FT   CDS           453..3347
FT                 /product="TAHRE_1p"
FT                 /note="gag gene."
FT                 /translation="MSTSDHLFSDDEVHSISSSPEQRNSPFHLEISPMSHE
FT                 SDNSQSNISIINLRKLPLKPTNNISKCSSGTAINIFHSLSHKEKENMNTNI
FT                 AQKDPLSIDNTAADTDGAKSSILKGKLPSPPLSSHTYKGKLPPATTHTNIS
FT                 ALTHTDASQREKIPTSVICTNAAAATNTNADLGAKTSDALGNFPSLSHSDH
FT                 SMENNLSSSTKIGPNTNSPSSHILTNTSQATNISAESRSKFPAPTNTDARL
FT                 KKAITSDKGEIHTQIQTNKSKEHNQENKPFNYLSCYASWSTSNPKPDISKL
FT                 SLTRKSTNRTGNSGKRSISPHQKNASLCPSAQGNLNSNLNSNSNPKSSATP
FT                 TEVNLSAARTLSRPAAKRDLFNSSSRSPEEQPMSFSEVVAGTGPDIIAPSA
FT                 PAPLTKTPGKRTNSDLDCSSFKTPNKRLRATPNFETPSLFPPLITPVFKSK
FT                 AAQSVYEESKARNGPPRQPLPCSNNASARSATAPPGIAPLPPQNTDVELPP
FT                 WKIVPQSRRAPPILVNNVREIVPLLEKLNYTAGVSSYSTRATEGNGVRIQA
FT                 KDMTAYNKIKEVLTANGFPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEEL
FT                 LKLGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKIISLKQLGGQRV
FT                 DIERKNRTREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTT
FT                 PATCVNCSGEHISAYKGCPAYKTEKRKLAVNNIDINKIRTIKDANITNYGR
FT                 QGPPSRNNFPRLPFSSSTSNRTTAESRQDTARARRNNPFRQNRNEARPIQP
FT                 RFSSHDFAIQKRLNKWRRNSDNVSKKGTINPKDKPKPRTPNMTSNPAQKHL
FT                 EMFQEKLRKARCERKEQDPEEKKTNIRMGDDESPPTTSRAARAFLKPRIID
FT                 DNIPTPMDTYSNPQKSPSDFDSKSLTQRVENIEKKIDNLMELLFKCLESTK
FT                 ESTLAHLMTS"
FT   CDS           3386..6694
FT                 /product="TAHRE_2p"
FT                 /note="pol gene."
FT                 /translation="MTFNLNNGQASNTLKIGYWNSCGITNKTNELEAYIKK
FT                 EGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRKGGTATIVSQNIRH
FT                 ACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLF
FT                 NHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIV
FT                 ATGHATHFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVL
FT                 DPDDSDWQHNKTNNAIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCID
FT                 ILINNIKSAANEATPPNRPQNNRTYNSSRRSTNLRLDEATKRLLEEKKELN
FT                 RIFRAVGTDEARRWFKNVQNRLSKEIRKLKQKLLNRNLQDIDTTDRYRTQK
FT                 LWKTTNTIKMQPRPCWPIKKDNDDSRQRTDYPWTRTLDEKAEAFASHLESR
FT                 FRTNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELNGLINSL
FT                 ELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM
FT                 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG
FT                 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL
FT                 SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLY
FT                 SIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAI
FT                 NLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRA
FT                 AKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNA
FT                 KILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTR
FT                 QADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLEL
FT                 SKNRYVKQLSKYILPLQQHRPKPPAEPIYSSIHNYTKKEEAEIVAKMRTKF
FT                 RQTLPTLLRIADQELEIRQSIAEEKRKEKEKSERRKALEKGPPDRWCELQI
FT                 NKYSKLYRKGLRAREEILELMLGQPATVIKIVIPDYEPEDDLTKKS"
XX
SQ   Sequence 10463 BP; 3913 A; 2638 C; 1670 G; 2242 T; 0 other;
     ttaaaagcaa agttttttaa aagttcaaaa atataataaa ataaagcaaa ttaaatttaa        60
     ttaataaaac aattaatttt atttaataaa attaaacgcg cttcgtcggc aaataactct       120
     cacgcgcaaa ttttattaaa ttcgcctttc aagttgaaaa attaaaagtt aaaatcgtct       180
     tccggccgca aagtttgaac cgcgacgata caaacattta atagacaaac aaaaagcgaa       240
     caataaatca gtgaattatt tgtgcaagct gccgccataa ccaaaaggag aagaagccaa       300
     aagacgaaga ggagaaagta aaccaggaga aattaagaag acaaggagga aaacttattt       360
     aaaaagacga cctaaactgg aggacaaatt acaaattaaa agccagggta tttatacctt       420
     acaagtatcg acctaatata atataaataa atatgtccac gtccgaccac ctattttctg       480
     acgatgaggt tcactcaatc tcctcaagcc cagaacagcg aaattcacca ttccaccttg       540
     aaatatcgcc catgtcccat gaatctgaca attctcagtc taatataagc attattaatc       600
     tgaggaaatt gcccttaaaa ccaacaaata atatttcaaa atgctcttct gggactgcca       660
     taaatatttt tcattccctt tcacacaagg agaaagagaa catgaacacc aatattgccc       720
     aaaaagaccc cctctcgatc gacaatacag ctgcagacac ggacggcgcc aaaagtagca       780
     tcttgaaggg gaaattgcct tcccctccgc tctcatcaca cacatacaag gggaaactac       840
     ctccagcaac gacccacact aacatatctg ctcttactca cactgacgct tctcaaagag       900
     aaaaaatacc cacctcagtg atctgcacta atgcagctgc agctactaat acaaatgcag       960
     atctaggcgc caaaacgagc gacgccttgg gaaatttccc ctccctctca cacagcgatc      1020
     atagcatgga gaacaaccta agttcctcca ccaaaattgg acccaataca aattcccctt      1080
     cttctcacat actcaccaac acaagccagg ccacaaacat aagcgcagaa agccgctcaa      1140
     aatttcccgc gcccaccaat actgacgcac gcctcaagaa ggccattact agtgacaaag      1200
     gggaaattca cacacaaatt caaacaaaca aaagcaagga acacaaccaa gaaaataaac      1260
     catttaatta cttaagttgc tacgcttcat ggtcaacttc aaacccaaag ccagacattt      1320
     ccaaactaag tttaactagg aaatccacca accgtactgg aaatagtggg aaaagaagca      1380
     tttcccccca ccaaaagaat gcttcgttat gcccttctgc tcagggtaat ttaaattcaa      1440
     atttaaattc aaattcaaat cccaaatcta gcgccactcc cactgaggtg aatttatcag      1500
     cagcccgcac cctcagccgg ccggctgcca agcgcgattt atttaattca tcttccagga      1560
     gcccagaaga gcagcctatg agtttttcgg aagtggttgc tggaacaggt ccagatataa      1620
     tagcaccctc cgctcctgca ccactaacga aaactccggg caaacgaaca aacagcgatc      1680
     tggactgctc tagctttaag acacctaata aaagattacg tgcgactcct aactttgaaa      1740
     ctccaagcct tttccccccg ctcattacac ccgtttttaa aagtaaggcg gctcaatctg      1800
     tttatgagga gtccaaggcc aggaatggac ccccccgcca gccgttaccc tgcagcaaca      1860
     atgcttctgc tcgcagcgca acagcaccac ccgggattgc ccccctaccc cctcagaaca      1920
     cagatgtaga gctgcccccc tggaaaatcg ttccccagag ccgtagagca ccccctatac      1980
     tagtcaacaa tgtgagggaa attgtcccac tgctggaaaa gctgaattat acagcaggag      2040
     tctccagcta ctccaccagg gcaacagaag gaaacggggt caggatccag gccaaggata      2100
     tgactgccta caacaaaatc aaagaagtcc tgaccgccaa cggttttcct ttattcacta      2160
     accagcccaa atccgagagg ggcttccgag tcatcatcag acacctccat cattccacac      2220
     catgctcgtg gatagtcgag gagctgctga agctcggatt ccaagcacgc ttcgctagaa      2280
     acatgacgaa tccagctaca ggtggcccca tgcgaatgtt tgaagtggag atagtcatgg      2340
     ccaaggacag cagccatggc aaaattatct cattgaaaca actcggtggg caaagggtgg      2400
     atatcgaaag gaaaaacagg actcgggagc cggtccagtg ctacagatgc cagggcttca      2460
     ggcactccaa aaattcatgc atgaggccgc ccagatgcat gaaatgcgct ggcggtcacc      2520
     tgtcatcctg ttgcacaaag ccaagaacca cccctgccac ctgcgtcaac tgctctggtg      2580
     agcatattag tgcgtacaag ggatgccccg cttataagac tgaaaaacga aaactggcgg      2640
     tcaacaacat tgacatcaat aaaataagga caatcaagga cgcgaacatt accaactatg      2700
     gacgacaggg ccctccctct cgcaacaact ttccccggct accatttagc tcctcaacct      2760
     ccaacaggac aacagccgaa tcccgccaag acacagcaag agcacggcgg aataacccct      2820
     tccggcaaaa cagaaacgaa gcaaggccaa tccagccacg cttctcctcc cacgactttg      2880
     ccatccagaa acgtctgaat aaatggcgcc gcaactctga caacgtctcc aaaaaaggca      2940
     cgataaatcc caaggacaag ccaaagccac gaacacctaa catgacgagc aatcctgcac      3000
     aaaaacacct ggaaatgttc caggaaaagc tccgcaaagc aagatgtgaa cgcaaggaac      3060
     aggacccgga agaaaagaag acaaacatca ggatgggaga cgatgaaagc ccgccaacca      3120
     ccagcagagc tgccagagca ttcctcaagc caaggatcat agacgacaac atccccacgc      3180
     ctatggatac atactctaac ccgcaaaaga gtccctctga cttcgacagc aaaagcctta      3240
     cacaacgagt ggaaaatatt gaaaagaaaa ttgataatct aatggaacta ttattcaagt      3300
     gcctcgaatc cacgaaagag tctaccttag cacacctcat gacctcctaa atcactaaat      3360
     tctctacgca aattaaaata ctactatgac ctttaatcta aacaacggac aagcttccaa      3420
     taccctaaaa atagggtact ggaactcatg tggaattaca aataaaacaa atgaactgga      3480
     ggcctacatc aaaaaagagg gtattcaaat tatgttagta actgaaacca ggttagagcg      3540
     aaattccaac gcacttaata tcaaaggctt ccacacctac ctagcacaaa accctacatc      3600
     ccacagaaaa ggcggcacgg ccaccatagt cagtcaaaac attagacatg cctgcctaaa      3660
     tcccatagag actgacttca tgcagagcgc acccatcgca cttatcccct caagtcgaat      3720
     acgcgcagac atgacaattg ttgccccaat atactgtccg cctgtatata aatggaccac      3780
     tgaacaattc tcgaagctct tcaaccactt cgagatgctt ctcgatggta agtccaaatt      3840
     tatacttggc ggcgattgga attgcaaaca cagactctgg ggtaactatt tatcctgcgc      3900
     taggggaaga tctctgtcac agtcaatcct tgcaaggaaa gaccttgaca tagttgctac      3960
     cggccatgcc acacactttc ccttcgacaa gaaaaaacag ccctctgcac tggactttgc      4020
     aatatgcaag ggcttccaca ctcaaaaact aaaaacctac tccacagatg aactcagctc      4080
     tgaccacctt cccatccaaa tagtcctaga tcctgacgac tcagactggc aacataataa      4140
     gacaaacaat gctattatac aaaaaagaac agatctcact aaatttaaga aaaacctaga      4200
     aaacaaaata ttactaaaca ccgaaattcg cacaggacag gacatcgacg actgcataga      4260
     cattcttatc aataacataa aatccgcagc caatgaagcc accccaccta atcgccccca      4320
     aaataaccgc acctacaatt cttcaagaag atccacaaac ctaaggctag atgaagcaac      4380
     taaaaggtta cttgaggaga aaaaggagct aaatcgaatc tttagagcag taggaactga      4440
     cgaagcccga agatggttta agaacgtgca aaatagactg tctaaagaaa tcagaaagct      4500
     caaacaaaaa ctactcaacc gcaacctaca agatattgac actacggacc gatatagaac      4560
     gcaaaaacta tggaaaacca caaatacaat taaaatgcaa cctcgaccct gctggccgat      4620
     aaaaaaggac aatgacgaca gccgtcaaag aactgactac ccctggacca ggactttaga      4680
     tgaaaaagct gaagcctttg catctcacct tgagtcccgc ttcaggacaa accaaattaa      4740
     cgacgccaaa gacagggaat tcgtcagaaa tgagctaaac aaatttaaat cattaaatgc      4800
     gagcggcgaa tccggaaaca gcaacttcaa accagtcact ctggctgaac taaatggcct      4860
     gataaactca ctggaattaa agaaagcccc aggaactgac aatcttaaca acaagaccat      4920
     aataaactta cctacaaagg ccagaatata tttaatactt atttataaca acatcctgag      4980
     aactggacat ttcccgaaca aatggaagca cgctagcatc tcaatgattc ccaaaccagg      5040
     gaaatcacca tttgctctaa attcataccg cccaatcagc ttactctctg gtctttccaa      5100
     actactcgaa agaatactac tgaaacgact gtatgacatt gactcttttg ccaaagcaat      5160
     cccttcccat caatttggtt tcagaaagga tcatggagcg gaacatcagc tggccagggt      5220
     gacccaattt attctaaaag cttttgatga aaaagatgtc tgttctgcca cattccttga      5280
     cattacggaa gcctttgacc gagtatggca cgacggcttg ctatataaac tatccagact      5340
     catccccaga tacctattcg acctacttga aaactattta tctaatagaa ccttctcagt      5400
     aaggatcgac ggtgaaacaa cgtctaggat aggtaatatt agagcaggag tgccccaggg      5460
     cagcatactg ggaccggtcc tctactcaat atactcatcc gacatgccct atcccatcgt      5520
     aaaagactat atgcgtaaca tatccttccc tgattaccac ccaactaata ttatcttagc      5580
     tacatatgca gatgatacca taattcttag ccggtccaaa tataccaagc ttgcgatcaa      5640
     cctaaatcaa aactacctta acgtcttctg taggtggtca aaaaaatggg acatagcaat      5700
     taatgcaaaa aaaaccggac acattctttt ctccctaaaa aaagaacaaa ctaatatata      5760
     cactccccca ctaatcaacg gacaaagagc tgccaaacta aacaaacaac gctatctcgg      5820
     acttatgcta gacagaagac tgaccttttg tgcacacatg acgctgctaa agggaaagac      5880
     tatagctgca tataaaaaac tggaatggct aataggaaaa aacagccacc tacccaaaaa      5940
     tgcaaaaatt ctcctctgga agcaaattgt ctcccccatc tggcattacg ccatagcaat      6000
     ctggggctcg ctggtatctg acacccaagc aaagaaaatt caaacaatgg aaaacaaata      6060
     catcagacga atcataaacg ccagcagata cacgagacaa gcagacataa ggacaaaata      6120
     taacattaaa tcatttgatg aaatttttga caaagcaagc caacgctacg ccaactccct      6180
     cactgaccat gaaaaccctt taatatatga cctccttatc aacgcctaca agccgaacag      6240
     actggaacta agcaaaaaca gatacgtcaa gcaattatca aaatatatac tgccccttca      6300
     acaacaccga cctaaaccac ccgcagaacc catctacagc tccatacata attatacaaa      6360
     aaaggaagaa gctgaaatag tcgccaaaat gagaaccaaa ttcagacaga cccttccaac      6420
     cctcctccgg atcgctgacc aagaattgga aataagacaa tccatagctg aggaaaagag      6480
     aaaggaaaaa gaaaaatccg aaaggagaaa agccttagag aagggaccgc cagatagatg      6540
     gtgtgaactt caaataaaca aatacagcaa attatacaga aaaggactaa gggccagaga      6600
     ggaaatcctt gaattaatgc tcggacaacc cgccactgta atcaaaatag taatcccaga      6660
     ctatgaaccc gaagacgacc taacaaaaaa gtcttgaaaa ctaaataaaa gcaaataaaa      6720
     ccaaaagtac atgtatttac aataatcatt gattgtataa ttggtgatta taatataaca      6780
     attataatta ttaatataat tgattgtcat aattgttagc tattgattat aaataactaa      6840
     tcaaaataca aactacaaac tatgaccgac ggaaagacgc acgccgacct gcttctcttc      6900
     ctacaatagc gatacacatc tccttctcca tagtcagcat ctttctgtgg aaaaacaaac      6960
     caattagatg gatgatacaa aaacacaaat aataaccaca cctcaacgca tccggataaa      7020
     aacaaccaac gacaacgcat tccagctgat catgacgaag tgatgcgaat aaaatcacca      7080
     cctggacata aaagaagaat cggtagatgg atatgaaaag gattggtgcg gcgaaagcat      7140
     gatgaatata aggcgactcg ctgcagcaat atatgcacaa cgtcacttac ctgaatcttc      7200
     ttgccgcaca gtcttttgaa gatccttatc accgctgcaa tccacacaca tcgccgcatt      7260
     gctaaagaca ggccatctaa gctgacccag cgccgattag gacactctgt tcgacgagcg      7320
     cctacagcga attgccgcta aaacctaaaa acaaaaaatt tattaacaaa tgaaatacaa      7380
     atatacaaaa ttcaaataaa acaaagcact tacctcactg accgcatcca actgcacgca      7440
     acacatccat atccaacata acagacaaga ggagacgggc cctcaaacgt aaaacaatat      7500
     cgccaacttt gcgcttacaa acacaaaaaa atttacaatt ttatgatgcc gtctcctctt      7560
     cccgatgcca ctgcctcaat atggattact agcgcggagc cgacagcaca ctaaaaggct      7620
     gaaaaatttg tcctcaaaat taatattttt ccttagtacc actatcccaa cgaattttcc      7680
     gcaaacctga aataaaaaga aaattaataa gaaagtgata caaaattaac taaaaacaaa      7740
     tagaaaatag caaaccggac aagcaaagta acagatataa atatgctact tcatcctgct      7800
     gaagacacgc atccatgcat ccttcttcca agactgcaaa acagaaagaa ggaaacacaa      7860
     gctatactgg gaaaaatata ttaaatcaca atacttatct aattgccaat ttgaagaatc      7920
     ctaaaccacg gcatcccagc ggcgatggcc ttatctttag ctgctacaaa tgtacctgaa      7980
     aacaaaaatc aaaaaacaaa aagtaattca actataaaaa caaacataat acttacctcc      8040
     agactatttt cctcccgaaa aacatacctg gaaaacaaaa acaatgcaac tatataaaca      8100
     aataaataca caaataatac ttacctccga actgcattcc acctaatgta cctgaaaaaa      8160
     tacaaaaatt acagaaatca caaaaataaa taacaaatgc tatacttacc taattttaat      8220
     attacaccca ttcccatggc ccaatctttg ggcggtcccc agcaacaatt cctgacccgg      8280
     aacattctaa aataatagga aaataaataa gattgcgact caaaattaag caataacaca      8340
     aaaaaaaaaa caacaaacct ggcagacaaa ttagctgacg ataaattaca acaccatcct      8400
     gctgacgtca cgcacgaaaa ttctctctcc taaaacacgg gatcccagcg gcgatgtcct      8460
     taactttagc tgctacaaat gtacctgaaa acaaaaaaac aaaaattaat tcaattataa      8520
     aaacaaacat aatacttacc tccagactat ttttcctccc gaaaaacata cctggaaaac      8580
     aaaaacaagg caactatata aacaaataaa tacatatata atacttacat ccaaactaca      8640
     ttccacctaa tgtatctgag aaatacaaaa attagagaaa tcacaaaaat aaataacaaa      8700
     ggttatactt acctaaaatt taatattaca tccattccca tggcccaatc gttgcggcgg      8760
     tcctcagcaa caattcctga cccggaacat cctaaaataa aaggcaaata aaataacaca      8820
     cataaaatag caaacctgac aggcaaacta gcagatgcta atttgcaaca ccatcccgct      8880
     gacgtcacgc acgaaaatcc tttctccaag agcgcaaaaa ctgaaaaaag aaacacaagc      8940
     taacactggg aaatatatac ttcttaacaa aatacttatc taaattgcca accggacgac      9000
     ttcaaagctg cggcctaatt ttaatattac atctatctcc gtggcccaat ctttgcggcg      9060
     gtcctcagca acaactcctg acccggaaca tcctaaaata aaaagaaaaa caaataagaa      9120
     tgcgactcaa aattaagaaa taacacacaa aaaataacaa acctgacagg caaactagca      9180
     gatgctaatt tgcaacacca tcatgctgac gtcacgcacg aaaatccttt ctcctaagac      9240
     cgcaaaagct gaaaaaggaa acacaagcta atactgggaa atatatattt ttaacaaaat      9300
     acttatctaa actgccaaat tgacgacttc aaagctgcgg catcataact acaacgacct      9360
     ccaaaataac tttcaaaaaa tgtacctgaa aaacagaaac taatgaaatc ataaaaacaa      9420
     atataatact tacccccaga ttagctatta cctgaaaaac aaaaaattaa tgcaactata      9480
     taaacaaata aaaacaaata tacttaccat caaactatcc atcacattgt acctgaaaac      9540
     aaaaacaaat gcaatcataa aaaacaatcc taatgcaata cttacctatc tctaacttta      9600
     cattcatttc catgcccgta tcgctgcggc ggacttctgc aacaaatctt gaaccggcgg      9660
     ccccaagctg ccaatcccga cgcaatggcc aatagacgag gcgctcctgg caactcttgg      9720
     cgaacaacta agctgcattc tactgacgac tcctctgcca caacgagaca gattcctcca      9780
     ttacgatccc agcagcttta agaccttgta acgacggctg cgctggaccc tccttgttct      9840
     accttctttt gatgaccggc gaagtggccc tgcaaattaa caatttatca aacaactgca      9900
     atcatctgcc actgaggttg aaatatatac ctactaaatg acagcggcgc gggatacact      9960
     cacctataat aggctgcttg cagcgctggc cggacatgca tattgcaagt ggcacgcatc     10020
     cagagtccac aacaagcccc agccagaatg ccaaaattac tcacctgcaa tgtttcctga     10080
     ggcctccagc gactcggtgc ttccgtcctt ccgacggggg tacctgaaaa gaataaatca     10140
     ataacaatgt tagttttaaa tttcaatgtt ttctataaaa tcatttcaat tgtaaattgt     10200
     aaacatacca tacaatatga taatgttacc tgtcctaatt actgtcaaaa gcctaagtct     10260
     acaaaatact aactactttt acattattac taactatgtc caacccccaa actcaccaca     10320
     tgtaatgtta cattcaaaaa tgcaaattat tgtacctata tattacaaac tctgtaatca     10380
     aaggcaaaat aaattgtgga tgcggaacag aatttattct gtctccgtac ctccaccagc     10440
     aaagttaaaa aaaaaaaaaa aaa                                             10463
//
ID   Talua       repbase;    DNA;    INV; 254 BP.
XX
AC   .
XX
DT   27-NOV-2009 (Rel. 14.12, Created)
DT   22-AUG-2012 (Rel. 17.08, Last updated, Version 3)
XX
DE   Talua short interspersed element consensus sequence.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Talua.
XX
NM   Talua.
XX
OS   Reticulitermes lucifugus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea; Termitoidae; Rhinotermitidae; Reticulitermes;
OC   Reticulitermes.
XX
RN   [1]
RP   1-254
RA   Luchetti A. and Mantovani B.;
RT   "Talua SINE biology in the genome of the Reticulitermes
RT   subterranean termites (Isoptera, Rhinotermitidae).";
RL   J Mol Evol 69(6), 589-600 (2009).
XX
RN   [2]
RP   1-254
RA   Luchetti A.;
RT   "Identification of a short interspersed repeat in the
RT   Reticulitermes lucifugus (Isoptera Rhinotermitidae) genome.";
RL   DNA Seq 16(4), 304-307 (2005).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 254 BP; 37 A; 60 C; 94 G; 63 T; 0 other;
     gccgatccca gtggccgcgc ggtctaaggc gtgggtctgc ggccgctcgc ttactgggat        60
     tgtgggttcg aatcccgccg ggggcatgga tgtctgtctc ttgtgagtgt tgtgtgttgt       120
     caggtagagg tctctgcgac gggctgatca ctcgtccaga ggagtcctac cgagtgtggt       180
     gtgtctgagt gtgatcgtga agcctcgata atgaggaggc cctaggcccc ctaggggctg       240
     ttgagccatg ggaa                                                         254
//
ID   Talub       repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   04-DEC-2012 (Rel. 17.12, Created)
DT   04-DEC-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Talub.
XX
OS   Termitoidae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea.
XX
RN   [1]
RA   Luchetti A. and Mantovani B.;
RT   "Molecular characterization, genomic distribution and
RT   evolutionary dynamics of Short INterspersed Elements in the
RT   termite genome.";
RL   Mol Genet Genomics 285(2), 175-184 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 287 BP; 64 A; 79 C; 75 G; 69 T; 0 other;
     ggccgtgcca tggctcaggc ggttagtcgc cggcctctca ccgcggaggc ccgggttcga        60
     tcccgggtca gtccatgtgg gatttgtggt ggacaaagtg gcactgggac aggtttttcc       120
     ccgagtactt cggttttccc ctgtcaattt cattccaccg gtgctccatt acttggaaaa       180
     acgaaaaaaa ctaatcattc atcttcatca cagggttgca caataagcct taaggctgcg       240
     gtgcgtccgt agcatctgct gcggggccct tcaccacaaa aaaaaaa                     287
//
ID   Taluc       repbase;    DNA;    INV; 387 BP.
XX
AC   .
XX
DT   03-DEC-2012 (Rel. 17.12, Created)
DT   03-DEC-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Taluc.
XX
OS   Termitoidae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea.
XX
RN   [1]
RA   Luchetti A. and Mantovani B.;
RT   "Molecular characterization, genomic distribution and
RT   evolutionary dynamics of Short INterspersed Elements in the
RT   termite genome.";
RL   Mol Genet Genomics 285(2), 175-184 (2011).
XX
SQ   Sequence 387 BP; 95 A; 96 C; 108 G; 84 T; 4 other;
     gtcgccctcg gtggactagt ggttagcgtg ctcgccactg gacccaaggt tcgcgggttc        60
     gatcccgacc gaggtcgatg gatttttaag ggtgataaaa atccgtagca ccacttcctt       120
     cggaggggaa gtaaagccgt cggtcccatg tcgtagattt acggcatgta aaagaacctt       180
     acgggcatga atagaaatgt ttcgtaagca aaattcagcg gccatttctc acccaagtct       240
     cctgactgcc tgccagatgg ctctggcagt cacatcagga ttgagtagaa cttgtgcggt       300
     cagtgggctg gtcacccact acangaatgc acangaccta gaaacctcgg aaagngaggc       360
     ccnagcccat atagggtgga gccatgg                                           387
//
ID   Talud       repbase;    DNA;    INV; 273 BP.
XX
AC   .
XX
DT   03-DEC-2012 (Rel. 17.12, Created)
DT   03-DEC-2012 (Rel. 17.12, Last updated, Version 1)
XX
DE   SINE element.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Talud.
XX
OS   Termitoidae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
OC   Blattoidea.
XX
RN   [1]
RA   Luchetti A. and Mantovani B.;
RT   "Molecular characterization, genomic distribution and
RT   evolutionary dynamics of Short INterspersed Elements in the
RT   termite genome.";
RL   Mol Genet Genomics 285(2), 175-184 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 273 BP; 47 A; 80 C; 83 G; 59 T; 4 other;
     ggcggtagcg tagtnggtat agcgactcgc tacgggctgg acggtccggg gttcgaatcc        60
     cggtggggtc aagaattctt cnncatccgt ccagaccggc cctggggccc acccagcctc       120
     ctatacaatg ggtaccgggc tctttcccgg gggtaaagcg gccggtgcgt ggngttgacc       180
     acccaccccc atctagtgcc gaggtcaaga aagagtggag cctcaactcc ctaagggcct       240
     gtccaggcct gtaatgggat tctttctttc ttt                                    273
//
ID   TANSAT_DB   repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila buzzatii species-specific satellite repeat sequence, a
DE   consensus.
XX
KW   SAT; Satellite; Simple Repeat; TANSAT_DB; satellite repeat;
KW   tandem repeat.
XX
OS   Drosophila buzzatii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RA   Kuhn C.G., Franco F.F., Silva Jr A.W., Martinez-Rossi M.N.
RA   and Sene M.F.;
RT   "On the pBuM189 satellite DNA variability among South American
RT   populations of Drosophila buzzatii.";
RL   Hereditas 139(3), 161-166 (2003).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Drosophila buzzatii species-specific satellite repeat sequence,
RT   a consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 188 BP; 65 A; 27 C; 28 G; 68 T; 0 other;
     ccggcaaaaa ccgtattatt tgttatatga tttctgtatg gaataccgtt ttagaagcgt        60
     cttttatcgt attactcaga tatatcttaa gatttagcat aatctaagaa ctttttgaaa       120
     tattcacatt tgtccagcaa aagactccgt caattagaaa acaaaaaatg ttatagtttt       180
     gaggatta                                                                188
//
ID   TAQI_CC     repbase;    DNA;    INV; 170 BP.
XX
AC   M15723;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.captiva TaqI repetitive sequence.
XX
KW   Repetitive sequence; TAQI_CC.
XX
OS   Caledia captiva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Gomphocerinae;
OC   Caledia.
XX
RN   [1]
RP   1-170
RA   Arnold L.M., Appels R. and Shaw D.D.;
RT   "The heterochromatin of grasshoppers from the Caledia captiva
RT   species complex. I. Sequence evolution and conservation in a
RT   highly repeated DNA family.";
RL   Mol. Biol. Evol 3, 29-43 (1986).
XX
DR   GenBank; M15723; Positions     502     671.
XX
SQ   Sequence 170 BP; 46 A; 28 C; 34 G; 62 T; 0 other;
     gatgtgcgca ttctatgtac tattgcctgt ggtttgcttt attacttatt ttaacgctca        60
     actcgccttt tttcattaca ttggcattaa atggagtgta tattatgaaa attgagagat       120
     aaaaatactt agaagggctg ccactggaac agtggttcac tgcatagttc                  170
//
ID   TART-1_DWi  repbase;    DNA;    INV; 4909 BP.
XX
AC   .
XX
DT   25-MAY-2011 (Rel. 17.09, Created)
DT   25-MAY-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from Drosophila willistoni.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   TART-1_DWi.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-4909
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from insects.";
RL   Repbase Reports 12(9), 1980-1980 (2012).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with ~98% identity.
CC   Despite the sequence identity between copies, the consensus is
CC   unlike an intact non-LTR retrotransposon. It does not encode an
CC   endonuclease and is not ended with polyA tail.
XX
FH   Key           Location/Qualifiers
FT   CDS           1197..3311
FT                 /product="TART-1_DWi_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="NILNKEISLSKNKHLNKKLCKIDSSDRYRPHKLWQLT
FT                 NKLKRQPLPNWPLRIPSGVDKKHAWTRSPEGKMELFTDQLEKRFSPNLTNS
FT                 SLDRAKINEETNAILAQKMLMEYACKTHHSIASSSANFDSSNSPFVKPITL
FT                 SELKKEIDSLINKKAPGYDRINNALIKVLPLKAIIFLLKIYNSILRFGHFP
FT                 LVWKKAIVVMVKKPKKPISEASSYRPISLLPAFSKILESLLAKRLLKCNRL
FT                 SQSIPNHQFGFRKFHGAEHQLARVTQFLQRAFEDKLYGSXIFIDITEAFDK
FT                 VWHCGLRNKLIKLLPINLYKVLDSYLKDRTFSVRGNHGIMSRDGKILAGIP
FT                 QGSVLGPLLYNIYSSDMPIPKFIIEHETLIEYYPTYKHGDTLLSTYADDTI
FT                 FISTDKNALVAMNKTENYLHKFSTWSNKWCFTVNVSKTVHVLFSRRSTSPA
FT                 VKAATVKFNNKPIKNTSSCRYLGVLVDSKLLFKTHIAKLCAQAKSTYTRYK
FT                 WLGGAKSHLSTRCKVTIYKQILVPIWTYAIPIWGSLISNTLFKKLTGTHNK
FT                 LLRKLTNANIYCPNSEIQEKHNAKPLETIYNDACLRFFNSMSDHENKEIEK
FT                 LYLKPFIPKRLPWPRYSKQIDKLVASRTIKKAQTPPLMPPQLNPSVTVTNI
FT                 KLRIESKLMEFFSKAPALIADNCHQTYNRITEKQDVLRAKEASIARKNRQK
FT                 IQSGH"
XX
SQ   Sequence 4909 BP; 1626 A; 1293 C; 773 G; 1215 T; 2 other;
     aatattggct twttttactt aaatatttgg tctctttatg tttttcccca ctaaaagcta        60
     attgctctaa aacttctagc ctataaagct aactcaacta aaagctaact gctctaaaac       120
     ttttagcctt taaagccaag ccttgctcgc aattgatgcg ccaacggcca agctaaaaaa       180
     ctagtgttac tcagacccaa aatatgggtc tccctacttt tttctccagt gtgggggaaa       240
     accagttttt tccccgacat taatcgccac gtttttgtag ccaccttagc accaaattct       300
     tattcgccaa gtttattatt aaaaaattgc tacctacttg actacttatg ctaaaagtaa       360
     cataatctta aatctatcat actacaaact atcttaccta aatcgctaaa aactaaatgt       420
     taatctaatg tcttattgta tattttttat ttagtattaa tctagtttta agataatttt       480
     aatccccccg ccactgctgc tgtaacggcc ttttaaattt aaatttttgc tatataccct       540
     tgtaggtgaa agggcaaaaa ataaaaagcg gcctcaatcg aaagactgag gccaggcgga       600
     tcaaacgcct taccttaaaa agtggggtaa ttcaaggtca tgtgaacgcg gcagaactct       660
     ccttgaagtg atcggctgac gagaaactgg acatcctggc gacgggtggt cctactcatt       720
     tcccacacga ccggcgaaaa aatccctcag ccattgactt tggagtttat tctggaataa       780
     accacaacag attaactact caagctatat gcgaactatc ctctgaccac ttacctgttt       840
     ttgtacacat cacgatggac cagcacccaa acttacttcc tgacaatcga agacttttgc       900
     ctgtaggatc taacattaaa ctgttccaaa acaccctcag cgactccctc cacctaaata       960
     tggaaatcga atctggatta gacattgagg acgcgattaa tatcttcaca aacaatagtc      1020
     accatgctgc agccctggcc actaaacctc tacgaaggga cctgccaaat acgaatcgta      1080
     ccgaatcgga ggagccatac ctataaataa aaaaatgcac aaattattaa aacaaaaaaa      1140
     taaaataaaa ttgatataat gcctctcacg aaactttgaa cgtaaaaaaa cattaaaata      1200
     tactaaacaa agaaataagc ctatcaaaaa acaaacactt aaataaaaaa ctatgtaaaa      1260
     tagactcctc tgatcggtac agaccccaca agctgtggca attaaccaac aaactaaaac      1320
     ggcagcccct tcctaactgg cctcttagga tccctagcgg agtagacaag aagcatgcat      1380
     ggacaagatc acctgaaggt aaaatggagc tgtttactga ccagttagag aagcgtttct      1440
     ctcccaactt gacaaatagc tcccttgaca gggccaaaat caacgaggaa acaaatgcca      1500
     tccttgccca aaaaatgctc atggagtatg catgtaaaac ccaccactcc atcgctagct      1560
     cctccgccaa ctttgactcc agcaactcac cttttgtcaa gcccatcact ctctctgaac      1620
     taaaaaaaga gattgatagc ttaatcaaca aaaaagcacc aggatatgat aggatcaaca      1680
     atgccctaat caaagttctc ccactcaaag ctatcatctt cttactcaaa atatacaaca      1740
     gcatcctacg ttttggccac ttccccctag tgtggaaaaa agccatagtt gtcatggtaa      1800
     aaaaaccaaa aaaaccaatt tctgaagcta gctcgtatcg ccccataagc ttgcttcctg      1860
     ctttctcaaa aatacttgaa tccttgcttg ccaagaggct ccttaaatgt aaccgtcttt      1920
     cacaatccat acctaaccac caatttggat tccgcaaatt tcatggggcc gagcatcaac      1980
     tagctcgcgt tacacaattc ctccagagag cttttgagga caaactgtat ggatcgscta      2040
     tattcatcga tattacagaa gcgtttgaca aagtttggca ctgcggtctg cgtaacaagt      2100
     tgataaagct actacctatt aacctataca aagttctgga cagttacctc aaggatcgca      2160
     cgttctccgt tcgcggtaac catggtatta tgtcccgtga tgggaaaatt ttagcaggaa      2220
     tccctcaggg tagtgttttg ggacccctgc tatacaacat atactcgtca gacatgccaa      2280
     ttccaaagtt cataattgag catgaaaccc tgatcgaata ttacccgacc tataaacacg      2340
     gtgacactct gctctctaca tatgctgacg atactatttt catctcgacc gataaaaacg      2400
     cccttgtagc catgaataaa acggaaaatt acctacacaa gttctctacc tggtccaaca      2460
     aatggtgttt cacagtcaac gtgagtaaaa cagttcatgt tctcttctcc agacgatcta      2520
     cctcacctgc tgttaaagct gccactgtta agtttaataa caaacctatt aaaaatacgt      2580
     cctcgtgccg atacttggga gtccttgttg atagcaaact cctgtttaaa acccatattg      2640
     ccaaactttg tgctcaagcc aagtccacct atactcgcta caaatggctc gggggagcta      2700
     aaagccatct tagcacccgc tgcaaggtca ctatctacaa gcaaatctta gtccctattt      2760
     ggacatacgc tattcccata tggggtagcc taatatctaa caccctattc aaaaagctca      2820
     ccggaactca caataaactg ctcagaaagc taacaaatgc gaacatctat tgcccaaact      2880
     ctgaaattca agaaaaacat aacgccaaac ctctagaaac tatatacaat gacgcttgcc      2940
     taagattctt taactccatg tctgaccatg agaacaaaga aattgaaaaa ctttatctaa      3000
     agccatttat ccctaaacgt ttgccatggc ctaggtactc aaagcaaata gataaacttg      3060
     tcgcctcacg aacgataaaa aaagcccaaa cgccaccact gatgccacct cagctcaacc      3120
     ctagcgtaac agtaactaac ataaaacttc gcattgaatc caagcttatg gagttcttct      3180
     ccaaggcgcc agctcttatt gctgacaact gtcaccagac ctacaacagg atcactgaaa      3240
     agcaagatgt tctcagagct aaggaagcgt ctatagctag aaaaaacagg cagaagatcc      3300
     agagcggaca ttgaggaaaa aatcagggac aaccccctgt cattcaaagg ctatcctgcc      3360
     cccccttggg ccaaacgaac aaattcaata cacggaaaat gaactactcg ctctaaacat      3420
     ggctagtctg gaatctgagt tgctcaaatt aattgataac agcacgaata gcactgatgc      3480
     tctaaaaaaa aaggaaaact gatactgcac ccatgatggt cctaactaac aatcactcta      3540
     acaccaatac taatacttct gcaaacattc acttacctaa ccataacgaa atatgatttc      3600
     aggcggcccc tgcaaagcca gaatcctgcc cactattcag ctgccgtcct ggcctggcca      3660
     gagggccagt cctcgacagc tgtgcctcca gtagacgcgc ctcctgcact ctctgcctcg      3720
     ttctcagcgt ctgcaccatc tcgtccatcg tcctgtccag atttccgctc gcctgatgca      3780
     ccaatacctg aaaataaaac aaatctaaaa ataaaaccaa ctaaaaagta caaatactca      3840
     cctgaaaata cacaacagca aacagcagct ccttgtccag cgtcgtatgc atcgtctcat      3900
     ctgcgtcgtc cagaatctcg tcaagctagt ccgtctgcag ctcctgtatc tgaaaatata      3960
     ttaaaattat tatctaaatc agcaataaaa cacaaaaact cacctgaaaa tctacgtcag      4020
     acagcagcag catcgtctgc gaatcctcgt ccagcatctg gccaatcatc tggtccatct      4080
     cgtccttcac tagcgcctgc acctggaaaa aaacacaaat cgtcagaaaa atctctcaat      4140
     aatcacgtaa acttacctgc aaattctctt cagtcacctg cagcaacacc agctggtcct      4200
     tctggccctc tacctaaggc tgcacctgaa aaaaaacaaa aaatcaacaa agaatcaagc      4260
     taatttaact aaatacatat ctaaaatcca gccgcagccg ctagcagttc caactggagc      4320
     tcctcctgca tcttctgctg caccacgtgg cccgtcatct ggtcctaaac gccataaagc      4380
     tgctcctgca cctggaaaaa atataaaaat gctaaaaaat gctactaaat caacaaatta      4440
     ctcacctgcc atgcaaatgc cgccagtagc atcgcgtgca attcttcgtg ctaaatctgg      4500
     ccaatctcct ggtccatctc gtccttcact agcgcctgca cctggaaaaa aacacaaatc      4560
     gtcagaaaaa tctctcaata atcacgtgag cttacctgca aatcctcttc agtcacctgc      4620
     agcaacacca gctggtcctt ctggccctct acccaaggct gcgcctgaaa ataaacaaaa      4680
     aatcaacaaa gaaacaagtt aaaataacta aatacatatc taaaatcgag ccccagccgc      4740
     ttgcagatcc aactggagct cctcctgctt cttgtgctgc atcacttggc ccgtcacctg      4800
     gtcctaaacg tcataaagct gcacctgtac ctgaaaaaaa tataaaaatg ttaaaaaata      4860
     ctactaaacc aaccaattac tcacctgcca tacaaatgcc gccagccgc                  4909
//
ID   TART-A      repbase;    DNA;    INV; 15576 BP.
XX
AC   AJ566116;
XX
DT   07-APR-2014 (Rel. 19.04, Created)
DT   07-APR-2014 (Rel. 19.04, Last updated, Version 3)
XX
DE   Drosophila melanogaster telomere-associated non-LTR
DE   retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; TART-A;
KW   TART.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-14477
RA   Levis W.R., Ganesan R., Houtchens K., Tolar A.L. and Sheen F.;
RT   "Transposons in place of telomeric repeats at a Drosophila
RT   telomere.";
RL   Cell 75, 1083-1093 (1994).
XX
RN   [2]
RP   1-15576
RA   Abad J.P., De Pablos B., Osoegawa K., De Jong P.J.,
RA   Mart�n-Gallardo A. and Villasante A.;
RT   "Genomic analysis of Drosophila melanogaster telomeres:
RT   full-length copies of HeT-A and TART elements at telomeres.";
RL   Mol Biol Evol 21(9), 1613-1619 (2004).
XX
DR   EMBL/GenBank/DDBJ; AJ566116; Positions       1   15576.
XX
CC   This element replaces TART (U02279). See ref. 1 for details.
XX
FH   Key           Location/Qualifiers
FT   CDS           3935..6844
FT                 /product="TART-A_1p"
FT                 /translation="MDGQNVNQSGGWASVLSISSDDGNCSSSPPSAIVSSL
FT                 DTTPTSNETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPDPLFVDKCG
FT                 STANTTEANEKQPADSPFPISISKNFSTSSPLTHVDTPTQEDDASAFNTLK
FT                 AAKTARIIFPTHTQIEPAKPSPPSKELSSNSAPKTLSYTDKITATQKNFPT
FT                 KTHVDTPTQDDDTNATKASKTAQIDSSHSQLHETKPTQPAKNPSPLTQKLT
FT                 TNKTAKTHTHTDKPTASQNLFPTKTHINSPTQYNDTNASTASKDGKINLSS
FT                 HSHLRETKPTQPAKNPSPLSQKQITSIAANTLTHTNKHTASQNFIPAKTHI
FT                 NIPTQYNDTNATKALKTAKPASPSHTYSRQTKPIKPAINALHPAQDTNPSP
FT                 AISAVTYTDKPTATQNIFPAKTFAELVRENAKRSQTAMQNPPHAKHDSAAL
FT                 GRLPSAARKNLTKTLSSPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDD
FT                 LGVTNLLSETPIFKSKVAIKIRQDSRRESLQKSVEMDTAPAISPSNTAAEP
FT                 DLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNI
FT                 RIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWI
FT                 ESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLG
FT                 GQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTK
FT                 PKNLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKTQSLHSQPTHLQTPR
FT                 NKHPYPKPTHFQTPRNKQSYTHPPPRTTVNNTKLPAKRIQGKKLSQRNISI
FT                 NKRLNRIRAFDKKPRKETSPPTTSKKVLASLEESSKNPNSVLNPANTHLTH
FT                 FCPPPITQDIPNDEPTEPSQEQYLLNRIEGMEKKLNNLLEIVTRLLNQGRE
FT                 CPKSPKNPFRDPILI"
FT   CDS           6885..10124
FT                 /product="TART-A_2p"
FT                 /translation="MTRACNRDILKIAFWNAGGINNKIDELKLFILNIDAH
FT                 IVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALE
FT                 PIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAE
FT                 KTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGC
FT                 ATHFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEINLDT
FT                 SNLFLQKQNNNILKKTTNIELFKTVLERKILLNTEIRVAEDINDAINIFIK
FT                 NIKDSADESTPSPRIPDNLRRMHGQANRNSHTLTLDENTSRLLEEKRILSR
FT                 IFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM
FT                 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNNN
FT                 VPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNS
FT                 KAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILK
FT                 PGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK
FT                 EHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI
FT                 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF
FT                 SSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFS
FT                 DWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGV
FT                 ILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP
FT                 IWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVK
FT                 TVEEFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQRYLKMTMD
FT                 HITQKQTGLTLSPKLLKIPDLDDCRTLKKRSEREKIRQTHLTELPTLLRLE
FT                 EEEAELKRIKKQEERERRERENQKWPPDRWCELEINRYNKKYRNGDLTRQE
FT                 IIEKFRGQPLNVQRIILPDYEGD"
XX
SQ   Sequence 15576 BP; 4963 A; 3979 C; 3433 G; 3201 T; 0 other;
     agtagcagca tttaatgtct tgcagcagtt tccatttgac aacttccgac gaccagactc        60
     ctcgcttggc ccctggcgat tcgccctgga agaaagaaag aagcatggat tagtcaaata       120
     tcaaagcaca acaagcatgc acgaaatctt cgcaacaagg actattccaa ggcaagcgat       180
     ggtgtgttct ttggctctac atatatcgtt gaaatccgtc tccaactgcc gcgagtcacc       240
     cacgacttcc actccctgca gacggacgta atgcactacg atgtgtaaat tttccggatc       300
     caagtgaacg ccaggcggaa gaggattccc tggatgtgaa ggatcacaaa ctgctgcttt       360
     ttcaagagtc cccatttaac aacttccgac gaccagactc ctcgcttggc ccctggcgat       420
     tcgccctgaa agaaagaaag aagcatggat tagtcaaata ccaaagcaca acaagcatgc       480
     acgaaatctg cgcaacaagg actattccaa ggcaagcgat gacggacgga atgcactact       540
     atgtgtaaat tttccggatc caagtgaacg ccaggcggaa gaggattccc tggatgtgaa       600
     ggatcacaaa ctgctgcttc ttcaagaggt aaccggcctc atttccactt gggtcacatc       660
     gattgtggag gaagccgatt gggactttga gcgagcccta aaattgttca ttcagaagaa       720
     cgctgatcac gaaatcccag atctagcatt cgcctagaat atgtgatctc gttggactgc       780
     gtgctggact gcggcgcatg ctttccctcc cgccagagac gggatgcgcg catcaggatc       840
     gacgggacag accggccgac gcctggcttc acgtcggcat ctatgcgacg acgtgataat       900
     cagcttcaca gtacctgcgg atgagggcac aggcgccagt cctctgccta gcgacacata       960
     caccaacagc aacatctaaa acagtcgcag tagatgcagg gaattttctt gctgcagtct      1020
     ccaactggaa aaatccgacg gcccaactcc tagcttagcc cggccaatct tcttggactg      1080
     gcaaacgatg tgatgaatcg tcctggaaga aagaagcatg gattatttct tcatacacag      1140
     cttgtctact aaaatgcatt tcccggcaaa ctggcactgg ggcgttgaaa atacgacact      1200
     actcaccaaa cagcagcaaa aacaacagca tcggcagcag gcgaccagca gctgctctgg      1260
     ctcacccaat gcgacagcaa tatctgcggc atggccagca acatgcagca agcaaaagac      1320
     cggcatggtg gtgaacaaca tatcgctcac gcccaacgat ctggaagccc tgagctaggg      1380
     aactgagtat ccgccagcgg atacttatgc agcggcgagg cgtcggaaat ccgatagccg      1440
     gaagagaggc cggagcagca tgttgggcat tttcgcccca gtagcagctg ctggggcagc      1500
     aagggcagag gtagcagtgt cagcgctcct ggtaaaccgg ccttttctgt tgaagacgcg      1560
     ggactgcggc gcaattgttc ctgccaaccg ggagttctct gcgcctgagg tcctgttgtg      1620
     cttcagcggc tccatctgct gttgcatctg gcgcttctcc aactttcctc cctgaaagaa      1680
     gagaatatta gtaggagcat gagaccaaca acagccctag cttaccacgt cagcggaaac      1740
     agcaactgca gaagcccggt aactttctga taatatgcag caataagagc ggctggatca      1800
     gcatgttgtg tagcttggcc ccagaagcag cagctgcggt accaaaggca gcggaagcag      1860
     ggtcaacata gtctgctatg ctgtgtccat actagcatag tcaagtcagc ggtggtgacg      1920
     ttgccgcagc agctgatcca cagggtacgg cctggaatgt tttgtcagag acggcagtgg      1980
     cctgggcgta ttagtcagat acgccaacaa catgataccc atgcgcaacc attcttccgg      2040
     tggcggcatg ctcgtaaagt agcggcggcg catgcatctc tcgaagcagc agcagcaaca      2100
     gaggcgtctc ataagtgcat gcgcagcagc ggtagcagcg gtggtggcag cagcagggag      2160
     atttcattgc tgcagtcgcc aaattacatg catcctacga ctcgactcac gctttttggc      2220
     ccctggccga tcttcatata tctcaaatcg acggctgctt ttaccctgga aaaaaaaaag      2280
     gagcttgggt tatattgaac tacactaggc ggcgacacac tcaccagcag cagccagaac      2340
     aacaacagcg gcagaagtag caggaaatta tctcactgca aaatccaatt ggcactttcc      2400
     gaagtccgta tttctcgcct ggcccctggc cagtaacagg ggcctgtgcg acggagatga      2460
     cgacgatgat ctgccctgtg gacggcctca agaaggaatc ggccctgtac tgcccacctg      2520
     acctgtgcca ggatagcagc aatgtcagcg gaccatggat ggaagaggcg gcactggcga      2580
     cggtcctcag ttttgcggtt tccgcggggc gtaggcgcag taatcggcgg cagcaacagt      2640
     ggcggcagca gaagggaatg tgtatctgca gtcgccgaat ggcaatttcc tgcccagctg      2700
     taatggaccg acaaatgttt tttggcatgt cgacctgtaa gaaataagca aggataagtt      2760
     ttttctttac aagattgtat atgaatttgt atttacggac aactggcttg tttcctgtcg      2820
     acgataaatg gcgcttcatg ttttcactct gccaaaatct gagtgcaagc atcggggctg      2880
     acgggccgaa tttgctgatg ccttgtacat gctagcatct ttatgccgcc gtgtaatttt      2940
     gcgacagcaa aacacatgat ggagaagacg aaggtgatcg atggcgcccg gatgacggaa      3000
     gcaggcccgt gctacccact ggtccgttgc caggacagca gcgtttcaat tatgcgaaca      3060
     gaggcactgg agccacttct caggcgatag ggatcatgag gcgacgacaa ctcgccagca      3120
     gcagtaacaa caacagcggc agcagcgatc tcggacttgc tgaacattgc ggctttttcc      3180
     cagcctggac cgtcatcaca aacgctctca aagatcggtg cgcctgcagc ctacggaagc      3240
     gtacaactgc ccaaagtcgt gctattgcat aatgttaggt gtcctggctg ctccggcgga      3300
     tgagctccac ccgattgaga gaggtaagaa ggcccagcaa gtcgccctta aataaaagaa      3360
     acaagcatta gactcggctg aaattgtaac atcagtcaga ctgtactcac gcatgcactt      3420
     agacaaaccg aagcctattc cacaaaaggc tgtgagtgca ccaaagttga cgggccacgc      3480
     cggccgatgc ttgctgcata ccggcatctc cgcatcagcg acgttacaag caccactaaa      3540
     attagaaaga ggcttactat aggcaaagcg cagaaaaaca aatattacaa taagaaatag      3600
     cacgcgattt ttctgcttcg tttccgcttg gtacaagtga gaccattctc cctatatgcc      3660
     attctagtat atttgcccga taagcgatat gctggcggca aaaaaaaaaa aaaagataat      3720
     agccgataag cccgccaaaa aaaagcgcga aatatcgata acgagctggc acgaaaattg      3780
     ctggcatatc gatcaaccgc tgtgtctttg agctatcgaa aaagcccgcc tacgcgccta      3840
     gcccaaattt gcaagtcagt tgagattata aaaccgacag aggcgcgcgc gcaacagtag      3900
     ctaaaagtga agccagcagc aacaacaaca actaatggac ggccagaacg tgaaccaaag      3960
     cggaggatgg gcatcggttt tatccatctc atcggacgat ggtaactgct catcctcgcc      4020
     gccatcagct atagtctcat cgctggatac cacgccaacg tcaaatgaaa ccaccatagt      4080
     aagaagaagc ctatatcaaa caaatgccga catgaaatct tacgattttg aaaatattgt      4140
     attaaatgaa aataaaaata ccatattgcc agacccttta tttgttgata aatgcgggag      4200
     tactgctaat accacagaag ccaatgaaaa acagcctgcc gatagcccct tccccatttc      4260
     cataagcaaa aattttagca cttcctcgcc actaacacat gtagacacgc ctacacaaga      4320
     agatgacgcc agtgcattta atacattgaa agcagccaaa acagctagaa taatttttcc      4380
     cacacacaca cagatagagc ccgccaaacc ctcgcccccc tccaaagaat taagctcaaa      4440
     ctcagcaccc aaaactctta gctacacaga caaaattaca gcaacacaga aaaatttccc      4500
     cactaaaaca catgtagaca cacctacaca agacgatgac actaatgcaa ccaaagcatc      4560
     aaaaaccgcc caaatagatt catcacactc acaactacat gaaaccaagc caacacagcc      4620
     cgccaaaaac ccttcacccc tcacccaaaa gctaaccaca aacaaaacag ccaagacaca      4680
     cacacacaca gacaaaccga cagcgtcaca aaatcttttt cccaccaaaa cacatataaa      4740
     ctcacccaca caatataacg acactaatgc aagcacagca tcaaaagacg gtaaaataaa      4800
     cctctcttca cactcacact tacgtgaaac caagccaaca cagcccgcca aaaacccctc      4860
     acccctctcc cagaagcaaa taacaagcat agcagccaat acactcaccc acacaaacaa      4920
     acacacagca tcacaaaact ttattcccgc caaaacacat ataaacatac ccacacaata      4980
     taacgacacc aatgcaacca aagcattaaa aaccgcaaaa ccagcttctc cctcccacac      5040
     atactcacgc cagacaaaac caataaagcc cgccataaac gcattgcatc ccgcccaaga      5100
     cacaaaccca agtccagcaa tcagtgctgt cacttacaca gacaaaccca cagctactca      5160
     gaatattttt cctgccaaaa cttttgcaga gctggtgaga gaaaatgcta aacgctcaca      5220
     aactgcaatg caaaatcccc ctcatgcaaa acatgactct gccgccctcg gacgcttacc      5280
     gagtgcagct agaaaaaacc taactaaaac actgagttct cctaaaactc ctgggaagcg      5340
     ccgcggggac tgtttggatg agggcttact tcaaacctct aacaaaaagg ttagaatacg      5400
     cgacgacttc tctgatgatg atctgggggt cacaaatcta ctctccgaaa cacccatatt      5460
     caaaagcaaa gtagctatta aaattcggca agactcaaga agagaatccc tgcagaagtc      5520
     agttgaaatg gacacagcac cagcaattag tccctcaaac acagcagctg agcccgacct      5580
     accgccctgg aaaactgttc cagctagcag aaaaccacca tcaatcttct tgtccaatat      5640
     tcagcagatt atcccgctaa tagaaaaact aaactataaa gccggggtaa atagctttac      5700
     taccaaatct gaacttggca acaatattag aatccaggct aaaacgatgg atgcctataa      5760
     agcaattcag aatgtcctcc ttggggcaaa cattccccta cactctcacc agccaaagag      5820
     cgcaaagggc ttccaaattg taattaggca cctccaccag tcaaccccga ccaaatggat      5880
     tgaaagccaa cttcaagaca tcggtatagc tacaaaattc atcagggcaa tgcagtttag      5940
     ggacacgaga aatcctatgc gcattcatga ggttgaggtt gtacccaagg ctgacggcag      6000
     ccatctcaag gtcctgctac taaaatccct tggaggtcaa acggtcaagg ttgaaaggaa      6060
     acgggtatcg aaggatccca cacaatgtca tcgctgccaa tgttttgggc atacaaaaaa      6120
     ttattgtaga aacccgttta aatgtatgaa atgtggccag ctgcacgcca cggtttcttg      6180
     cactaaaccc aaaaaccttc cggctacttg tgcaaactgc aatggaagcc acgtaagcag      6240
     ctataaagga tgtcctgctt tccaagaagc aaagcaaaga ctatctatca acaaaactca      6300
     atccctacac tcacaaccca cgcaccttca gaccccccgc aataaacatc cctacccaaa      6360
     acccacccac tttcagacgc cccgcaataa gcagtcctac acacaccccc ctcctcgaac      6420
     aacagtaaac aacacaaaat tacctgccaa aagaatccaa ggaaaaaagt tatcgcaaag      6480
     gaacatatct ataaataaac gcttaaatag aattagggct tttgacaaga aaccgagaaa      6540
     ggagacaagc ccgccgacaa ctagcaaaaa ggtactggcc tccctagaag aaagcagcaa      6600
     aaacccaaac agcgtcctaa acccagccaa cacccatctc actcatttct gtccaccccc      6660
     aataacacaa gatatcccta atgacgaacc cacggagccg agtcaggagc aataccttct      6720
     aaatcgtatt gaagggatgg aaaagaagct caacaatctc ctggaaatcg tcacccgcct      6780
     actaaaccaa ggaagagagt gtccaaaatc tccaaaaaat cctttccgag atccaatcct      6840
     catttaaacg ctcttgctag tagcatcaga aagtgacgta tcttatgact cgggcgtgca      6900
     acagggatat ccttaaaatt gctttctgga acgctggtgg gatcaataat aaaatagacg      6960
     agctcaaact gttcattcta aatattgatg cccacatagt catagtcact gaaaccagac      7020
     ttgacaacaa atcgaccaaa ctagaacttc caggatattt cacatactta gcccaaaatc      7080
     ctgtttctag caagagagga ggagtcgcca ctatagtaaa cagcagtatc cgacacatgg      7140
     ccttagaacc gattgaaaaa gaatgcatac agagcgcccc aatagtcttg ctgcctgaaa      7200
     acaacagacg cagcgaaatg atagtaatag catctgtcta ctgtccgcct tcgctaagct      7260
     ggtcgcccca ccactttact gacgttctca attttgccga gaaaactctg ggagggcaga      7320
     caaagttcat tctatgtggc gactggaatg caaaacacag gcaatggggt tgtacccgcg      7380
     cctgtcaacg cggcaccgca ctctacgaag cagttcaagc agatcccatg gctgagatta      7440
     ttgctaccgg ctgtgcgaca catttcccgc acgacacacg gaaaaacccg tcagcaatag      7500
     atttctccat atgcaaagga ctgggcaggc tcgaaaagag aatttcctca agtgcggact      7560
     tatcttcaga ccaccttccc atcctgcttg agatcaactt agatacaagc aacctctttc      7620
     tgcaaaagca aaacaataac atcctcaaga aaactacgaa cattgagctc tttaagactg      7680
     ttcttgaaag aaagatactt cttaatacgg agataagagt agcagaagac ataaatgacg      7740
     ccataaatat ctttatcaaa aacatcaagg actcggctga tgaatcaact ccctccccaa      7800
     gaatccctga caacctcaga agaatgcatg gacaagctaa cagaaatagt cacaccctca      7860
     cactagacga aaacacaagc agattgttgg aagaaaaacg gatactaagt agaattttta      7920
     aagctactag aacggacgag gacaaagcta aactaaaagc agctgaaaat cgactaaaaa      7980
     aagcggtaaa gatcttgaga gaaaagagaa ttaataaaca aattgaagga atagacacga      8040
     aaaacccgga cagaatgagg aaaatgtgga gactgctaga tgaaggaaaa aagacaaacc      8100
     aaccgaactt tcccctcaaa ctggaaacca aaagaggccc caaatggaca aaaacgataa      8160
     aggagacaac agaagcattt gtttcccact tagaaggaag atttaagcca aataacaacg      8220
     tacctgatta ccacataaat acagttaact ctggactaag aacaattaaa gaaagcatgt      8280
     taacagaaag atatgatgta aacaagaatc cctgtaacca acctatcaca ctaaaggaat      8340
     taaatgacga aataaaaaac ttaaagaata gtaaagcacc gggaaaagac cttataacaa      8400
     accagcttat aaaaacccta ccgactaaag ctacactgta ccttatccta atctataact      8460
     ctatacttag aattggatac tacccagacg cctggaaaca tgcccaagtg aaaatgatct      8520
     taaaaccagg gaaaagtgtg aacgacccga agtcatatag gccgatcagt ctactctcgg      8580
     gactctctaa aatgtttgaa agactacttc taaaaagact ttttagggta gatctattca      8640
     aaaaagccat accactgcac caatttggct tcagaaaaga gcacggaact gagcagcaaa      8700
     tagccagggt cacccagttc atcctcgagg cctttgagcg aaaggaatac tgctcagcgg      8760
     ttttccttga catctctgag gctttcgata gggtctggca cgaaggcctt ttacttaaac      8820
     tagctaaaat attaccatac aacctataca ttattctcga aagctacctt acaaacagaa      8880
     catttgaagt taaagaccaa gctggagaga cttcgagagc aggacaaata ggcgcagggg      8940
     tgccccaagg aagcaacctt ggacccatac tgtactctat cttctcctca gacatgccac      9000
     tcccacacat ataccacccc tccccaacag aaagaattat gctctcaaca tacgcagacg      9060
     acactatagt actcagctca gacatactag caactgctgc cacaagaaac aacgaaaact      9120
     acctcaagac attttcggac tgggcagaca aatggggtat ctcagtaaat gctgctaaaa      9180
     caggacatgt catttataca ttaaaaaacg acatacctac aaatctaaag accatgaaga      9240
     ttaagggtca agcaataaaa aaggaaagca agcaatcata ccttggcgta atccttgata      9300
     gcaagctaac acttagtcct cacgtcacga aggtagtagg taaatacttg acagcctata      9360
     gaaaaatgtc atggatctta aatgaaagaa gcaaactccc tactaatact aagatgctga      9420
     tcctcaaatc agttctatcg ccaatatggc agtatgccat agcagcctgg ggtccccttg      9480
     tgacagatgc acagataaga cggatacaag ttgaggaaaa cagaaaaatg agagacatat      9540
     gcagagcggg aagatacacg aaaaaccaaa ctataaggga ccgctactgt gtcaaaacag      9600
     tagaagagtt ctatcaacag gctgtccaca ggttctcaga aactacaaaa tcgcacccta      9660
     atgtagctgt tcgcaggata ttctctaggc actatatccc gaacagacta gaaagaagca      9720
     ggcagaggta cttgaaaatg acaatggacc atatcacgca aaaacagact ggactgaccc      9780
     tctcacctaa actcttaaaa atccctgatc tagatgactg cagaacctta aaaaagcgaa      9840
     gcgagagaga gaaaataaga caaacgcatc taactgaact ccccaccctg ctgagactag      9900
     aggaagagga ggcagagctc aaaagaataa aaaaacagga agagagggaa agaagggaaa      9960
     gggaaaacca aaagtggcct ccagataggt ggtgtgaatt ggaaataaac cgatataata     10020
     aaaaatatag aaatggcgat ctaaccaggc aggaaattat agaaaaattc cgagggcaac     10080
     cattaaatgt acaacgaata atcctacccg actacgaagg tgactaaaag taaatcaaaa     10140
     caaactaggg tcggagcata aagcagaaat aattaaccta gcggaagggg cggcaaaaat     10200
     atttaaaaga aaggaaataa atacaaaaag gctaaaggct aagttacagg ttacataaaa     10260
     agggaaatgt gcttatagat ataatggtaa aattaactta actaaacacc tactggaaaa     10320
     caaaaccatg atggctgcgt acttaaaacg tttctcctgg cgcgattgaa aatccatctt     10380
     tcctatccaa ccgagggatc tgcgactgcg gccttctgcc gttcggctcc tgatggatcc     10440
     atctgctgct ggaatgggtg ccacaccggc gctccaacct aaaagaaaga taatatgtct     10500
     tagttttctt tccctttttc tcataaaaaa acaacagctc atctggagtc tgataatagc     10560
     tttagctcac caagacagca aaaacaacag catcaaggcc agcaacagtg gaggcagaga     10620
     ccaagcggtt tgctgaacat ttcgctgccc acatccacca ttcctggagg ctctgaatga     10680
     gggagctgaa gcctctgaaa attgaagatc ctactccaat gtgacacttt cggctccgag     10740
     ctcaacgccg gcgctgcaaa tccggcgtta taaggaaagg gtgctccagc ttgtggagtg     10800
     gtctttcccc agaggcagca gcagcagcaa cgccagcggc aattggcgac ctctgcgtag     10860
     ccgagtcaat cccgttatcg gtccgtctgg cgatgcgttc cgacgcggcg gtatgcgtcc     10920
     atagggaccg cctagaatgc ttggccagga gacagcagta gacctgggcg tgggcgtcac     10980
     cagcaacatg gtagccatgc gcagtcaatt ggccggtggc aacaatcttg ccatgcagca     11040
     atagcggcgc atgctaccct tggagcgacg tcaacagcta catatttttc aacagtgtag     11100
     cgcgaccttt aggcggctac acctacacca gcagcagcga tattggcagt agcagcattt     11160
     aatgtcttgc agcagtttcc atttgacaac ttccgacgac cagactcctc gcttggcccc     11220
     tggcgattcg ccctggaaga aagaaagaag catggattag tcaaatatca aagcacaaca     11280
     agcatgcacg aaatcttcgc aacaaggact attccaaggc aagcgatggt gtgttctttg     11340
     gctctacata tatcgttgaa atccgtctcc aactgccgcg agtcacccac gacttccact     11400
     ccctgcagac ggacgtaatg cactacgatg tgtaaatttt ccggatccaa gtgaacgcca     11460
     ggcggaagag gattccctgg atgtgaagga tcacaaactg ctgctttttc aagagtcccc     11520
     atttaacaac ttccgacgac cagactcctc gcttggcccc tggcgattcg ccctgaaaga     11580
     aagaaagaag catggattag tcaaatacca aagcacaaca agcatgcacg aaatctgcgc     11640
     aacaaggact attccaaggc aagcgatgac ggacggaatg cactactatg tgtaaatttt     11700
     ccggatccaa gtgaacgcca ggcggaagag gattccctgg atgtgaagga tcacaaactg     11760
     ctgcttcttc aagaggtaac cggcctcatt tccacttggg tcacatcgat tgtggaggaa     11820
     gccgattggg actttgagcg agccctaaaa ttgttcattc agaagaacgc tgatcacgaa     11880
     atcccagatc tagcattcgc ctagaatatg tgatctcgtt ggactgcgtg ctggactgcg     11940
     gcgcatgctt tccctcccgc cagagacggg atgcgcgcat caggatcgac gggacagacc     12000
     ggccgacgcc tggcttcacg tcggcatcta tgcgacgacg tgataatcag cttcacagta     12060
     cctgcggatg agggcacagg cgccagtcct ctgcctagcg acacatacac caacagcaac     12120
     atctaaaaca gtcgcagtag atgcagggaa ttttcttgct gcagtctcca actggaaaaa     12180
     tccgacggcc caactcctag cttagcccgg ccaatcttct tggactggca aacgatgtga     12240
     tgaatcgtcc tggaagaaag aagcatggat tatttcttca tacacagctt gtctactaaa     12300
     atgcatttcc cggcaaactg gcactggggc gttgaaaata cgacactact caccaaacag     12360
     cagcaaaaac aacagcatcg gcagcaggcg accagcagct gctctggctc acccaatgcg     12420
     acagcaatat ctgcggcatg gccagcaaca tgcagcaagc aaaagaccgg catggtggtg     12480
     aacaacatat cgctcacgcc caacgatctg gaagccctga gctagggaac tgagtatccg     12540
     ccagcggata cttatgcagc ggcgaggcgt cggaaatccg atagccggaa gagaggccgg     12600
     agcagcatgt tgggcatttt cgccccagta gcagctgctg gggcagcaag ggcagaggta     12660
     gcagtgtcag cgctcctggt aaaccggcct tttctgttga agacgcggga ctgcggcgca     12720
     attgttcctg ccaaccggga gttctctgcg cctgaggtcc tgttgtgctt cagcggctcc     12780
     atctgctgtt gcatctggcg cttctccaac tttcctccct gaaagaagag aatattagta     12840
     ggagcatgag accaacaaca gccctagctt accacgtcag cggaaacagc aactgcagaa     12900
     gcccggtaac tttctgataa tatgcagcaa taagagcggc tggatcagca tgttgtgtag     12960
     cttggcccca gaagcagcag ctgcggtacc aaaggcagcg gaagcagggt caacatagtc     13020
     tgctatgctg tgtccatact agcatagtca agtcagcggt ggtgacgttg ccgcagcagc     13080
     tgatccacag ggtacggcct ggaatgtttt gtcagagacg gcagtggcct gggcgtatta     13140
     gtcagatacg ccaacaacat gatacccatg cgcaaccatt cttccggtgg cggcatgctc     13200
     gtaaagtagc ggcggcgcat gcatctctcg aagcagcagc agcaacagag gcgtctcata     13260
     agtgcatgcg cagcagcggt agcagcggtg gtggcagcag cagggagatt tcattgctgc     13320
     agtcgccaaa ttacatgcat cctacgactc gactcacgct ttttggcccc tggccgatct     13380
     tcatatatct caaatcgacg gctgctttta ccctggaaaa aaaaaaggag cttgggttat     13440
     attgaactac actaggcggc gacacactca ccagcagcag ccagaacaac aacagcggca     13500
     gaagtagcag gaaattatct cactgcaaaa tccaattggc actttccgaa gtccgtattt     13560
     ctcgcctggc ccctggccag taacaggggc ctgtgcgacg gagatgacga cgatgatctg     13620
     ccctgtggac ggcctcaaga aggaatcggc cctgtactgc ccacctgacc tgtgccagga     13680
     tagcagcaat gtcagcggac catggatgga agaggcggca ctggcgacgg tcctcagttt     13740
     tgcggtttcc gcggggcgta ggcgcagtaa tcggcggcag caacagtggc ggcagcagaa     13800
     gggaatgtgt atctgcagtc gccgaatggc aatttcctgc ccagctgtaa tggaccgaca     13860
     aatgtttttt ggcatgtcga cctgtaagaa ataagcaagg ataagttttt tctttacaag     13920
     attgtatatg aatttgtatt tacggacaac tggcttgttt cctgtcgacg ataaatggcg     13980
     cttcatgttt tcactctgcc aaaatctgag tgcaagcatc ggggctgacg ggccgaattt     14040
     gctgatgcct tgtacatgct agcatcttta tgccgccgtg taattttgcg acagcaaaac     14100
     acatgatgga gaagacgaag gtgatcgatg gcgcccggat gacggaagca ggcccgtgct     14160
     acccactggt ccgttgccag gacagcagcg tttcaattat gcgaacagag gcactggagc     14220
     cacttctcag gcgataggga tcatgaggcg acgacaactc gccagcagca gtaacaacaa     14280
     cagcggcagc agcgatctcg gacttgctga acattgcggc tttttcccag cctggaccgt     14340
     catcacaaac gctctcaaag atcggtgcgc ctgcagccta cggaagcgta caactgccca     14400
     aagtcgtgct attgcataat gttaggtgtc ctggctgctc cggcggatga gctccacccg     14460
     attgagagag gtaagaaggc ccagcaagtc gcccttaaat aaaagaaaca agcattagac     14520
     tcggctgaaa ttgtaacatc agtcagactg tactcacgca tgcacttaga caaaccgaag     14580
     cctattccac aaaaggctgt gagtgcacca aagttgacgg gccacgccgg ccgatgcttg     14640
     ctgcataccg gcatctccgc atcagcgacg ttacaagcac cactaaaatt agaaagaggc     14700
     ttactatagg caaagcgcag aaaaacaaat attacaataa gaaatagcac gcgatttttc     14760
     tgcttcgttt ccgcttggta caagtgagac cattctccct atatgccatt ctagtatatt     14820
     tgcccgataa gcgatatgct ggcggcaaaa aaaaaaaaaa agataatagc cgataagccc     14880
     gccaaaaaaa agcgcgaaat atcgataacg agctggcacg aaaattgctg gcatatcgat     14940
     caaccgctgt gtctttgagc tatcgaaaaa gcccgcctac gcgcctagcc caaatttgca     15000
     agtcagttga gattataaaa ccgacagagg cgcgcgcgca acagtagcta aaagtgaagc     15060
     cagcagcaac aacaacaact aatggacggc cagaacgtga accaaagcgg aggatgggca     15120
     ttggtcttat ccatctcatc ggacgatggt aactgctcat ccttgccgcc atagtctcat     15180
     cgctggatat caagtcatcg ctcaactata ccttaaaatt actcaccaaa actcttttct     15240
     ccttttccat aagataaagt aaagtaaagt aaagtaaagt aaagtaaagt aaattaaagt     15300
     aaagtaaagt aacgtaaagt aacataatat ttaaatttaa attctacact tgaacaatgg     15360
     cgcgcaaaac tgccgcaatg taattcaaaa atgtctcccg caaatttaaa acatagatta     15420
     atacttgtaa gtatggcgcg catatctgcg gccaagaaat ccgaaaatgt aatttgccac     15480
     aaattgtcac tatatatttt taagcaaaaa tcagaggaca ataaatgcca acgtcattag     15540
     acgttgaaaa tatttaaaaa aaaaaaaaaa aaaaaa                               15576
//
ID   TART_B1     repbase;    DNA;    INV; 10654 BP.
XX
AC   U14101;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   15-OCT-2005 (Rel. 2.02, Last updated, Version 3)
XX
DE   Drosophila melanogaster TART-B1 non-LTR retrotransposon.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   Repetitive sequence; TARTB1; TART_B1.
XX
NM   TART_B1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-10654
RA   Sheen M.F. and Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to
RT   Drosophila chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-10654
RA   Levis W.R.;
RT   "TART_B1.";
RL   Direct Submission to Genbank (29-AUG-1994)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
RL   1124 Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14101; Positions       1   10654.
XX
FH   Key           Location/Qualifiers
FT   CDS           4131..7382
FT                 /product="TART_B1_1p"
FT                 /translation="MTRADNRDILKIAFWNAGGINNKIDELKLFILNIDAH
FT                 IIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALK
FT                 PIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAE
FT                 KTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGC
FT                 ATHFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPILLEINLDT
FT                 NTLFLQKQNNNILKKNTNIELFKKVLERKILLNTEIRVAEDINDAISTFMK
FT                 NIKDSAAESTPSPRIRDNPRRRHRQANRNSHTLALDENTSRLLEEKRILSR
FT                 VFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKM
FT                 WKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNNN
FT                 VPDYHIDRVNTGLRIIKESMLTERHNLNKNPHNQPITLKELNDEIKNLKNS
FT                 KAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILK
FT                 PGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRK
FT                 EHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI
FT                 LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIF
FT                 SSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFS
FT                 DWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYLGV
FT                 ILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSP
FT                 IWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIK
FT                 TVEEFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQRYLKMTNE
FT                 HITQKQTGQTLSPKLLKIPDLNDCRTLKKRNERDKIRQTHLIELPTLLRLE
FT                 EEEEELRRIKKQEERERREKETQKWPPDRWCELEINLYNKQYRRGDLTRQE
FT                 IIQKFRGQPLNVQRIILPDYKGDQEHN"
XX
SQ   Sequence 10654 BP; 3669 A; 2717 C; 2036 G; 2232 T; 0 other;
     gatccggccg gatggcagct cgacgacggt agcaggccac catgcccgcc agcccgcagc        60
     taggatagca gcaacatcag cgtcttatta acgcgaacgg cggcactggc ccttagctga       120
     ccagctgcaa caacatcagc gacgcagtct ccaccagcag caacaacagc agcggcgctt       180
     gcgacagcag cagcagggaa tggttctgcc gcagtcgcct attgctgcct ataaagagca       240
     ttccttgcca attggctttc tgtacgacga cgatgatcct gcggacaaat ccacctttcc       300
     ggacgcctga gtattatggc gagcctgctg atcattgttt ctccgactcc ttacttgacc       360
     actggacaat catacaatca ccggcttttc acatctggaa gaaagaaacc tggattagta       420
     tttgcccttc agatttgtat gaaactgcat ttctggccaa ccggagtgtt tcctgcagac       480
     gacgctggac tgcgacgcac ttttttctac caacacagat gggacgcttg catcagatct       540
     gacgggccag actggccgat gcctggtaca cgatggcatc tccgcggcgg cgagatgtgc       600
     agcgacgctg aaagcaataa taattctttt actttgcagt atcaaaaatg agaagccaca       660
     tcacaattta catcagcaaa aattacacgt gatatctttt tcttttgcct aggagtagtg       720
     agacctgcta ccaaaatgac cagtaatacc ggctaacgga agcgagatat cgataatcat       780
     tctggcggta aaatagccag aacatcgata accagctgtg cattttccct tcgatttatc       840
     gaagtcaaat agcccgccta ggctatcgga ccggatcggc aagtcagtag tgattaaaaa       900
     tccggcagag gcgcctgtgc agcagctacc caaagtgaac acgacgaaac gcaacaacaa       960
     aatggacgga cataatggag atcaaagtga aggatgggca acagtgctat ctatctcctc      1020
     ggatgatagt aactccttgt cgtcgccgcc gtctataata gtttcatcgc tggacaccac      1080
     gccaacttcg cacgaaacca ccatagtaag aagaagccta tatcaaacaa atgctgacat      1140
     gaaatcttac gattttgaaa atattgtatt aaatgagaat aaaaatacca tattgccaga      1200
     ccctttattt gttgataaat gcgggagtac tgctaatacc acagaagcca atgaaaaaaa      1260
     gcctgccaat agccccttcc ccatttccat tagcaagaat tttagcactt cctcgccact      1320
     aacacatgta gacacgccta cacaagaaga tgacgccagt gcgttcaata cattgaaagc      1380
     agctaaaaca gctagaataa tttttcccac acacacacat ataaagccca ccaaaccctc      1440
     gcccccctcc aaagaattaa gcacaaactc agcactaaaa actctcagct acacagacaa      1500
     aataacagga acacagaaaa atctacccga caaaacacat gtagacacac ctacacaaga      1560
     tgacgacatt aatgcaacca aagcatcaaa aaccgctaaa ataatttcta cacagacaca      1620
     cctaggtgaa accaagccaa tacagcccgc caaagacccc tcaccccgca cccaaaagcc      1680
     tattgcacac aaagctgacg agacacttac ccacacagac aaactcacag catcacaaaa      1740
     cctcgttccc gccaaaacac atataaacac acccacacaa tataacgaca ctaatgcaac      1800
     caatgcatta aaaaccgcta aaataaattt ctcttcacac tcacaccaaa gtgaaatcaa      1860
     gccaacacag tccgccaaaa acatttcacc cctcacacaa aagcaattca caagcgaatc      1920
     agccgggaca cacacccata cagacaaaca caaaaacaca gcatcacaaa atctcttttc      1980
     cgccaaaaca cacattaact cacccacaca acataactac actagtgcag ccacagcatc      2040
     aaaaaccgct aaattaattc tctccccaca ctcacaccta agtgaaacca agccaacaca      2100
     gcccgcttta agcccctcgc ccctctccca gaagcaaata acaagcatag cagccaagac      2160
     actcacccac acaaacaaac acacagcatc acaaaacttt attcccgcca aaacacatat      2220
     aaacataccc acacaatata acgacaccaa tgcaaccaaa gcattaaaaa ccgcaaaagc      2280
     agcttctccc tcccacacat actcacgtca gacaaaacca ataaagtccg ccataaacgc      2340
     attgcatccc gcccaagaca caaacccaag cccagcaatc agtgctgtca cttacacaga      2400
     caaacccaca gctactcaga atatttttcc tgtcaaaact tttgcagagc tggttaggga      2460
     aaatgcaaaa cgcttaccaa ctccaatgca gaattcccat caagctaaaa atgactctgc      2520
     cgctctcgga cgccccccga ctgcagctag aaaaaatcta aataaaacac tgatttctcc      2580
     taaaactcct gggaagcgcc gtggggactg tcttgatgaa ggcctactac aaacctctaa      2640
     caaaaaggtt agaatacgcg atgacttctc tgacgatgat cttggggtca caaatctact      2700
     ctctgaaaca cccttattca aaagcaaagc agctatcaag atccggcaag actcgagaag      2760
     agattccctg cagaagtcag ccgaaatgga cacagctcca gcaattagtc cctcaaacac      2820
     agcagccgat tccgacctac cgccctggaa aactgttcca gctagcagaa aaccaccatc      2880
     aatcttcttg tccaatatac agcagattat cccgctaata gaaaaactaa actataaagc      2940
     cggggtaaat agctttacca ccaaatctga acttggcaac aatattagaa tccaggctaa      3000
     aacgatggac gcccacaatg caattcagaa tgttctcctt gaggcaaata ttcccctaca      3060
     ctcccaccag ccaaagagtg caaagggctt ccaaattgta attaggcacc tccaccagtc      3120
     aaccccgacc aaatggattg aaagccaact tcaagacatc ggtatagcta caaaatttat      3180
     cagggcaatg cagtttaggg acacgagaaa tcctatgcgc attcatgagg ttgaagttgt      3240
     acccaaggct gacggcagcc atctcaaggt cctgctacta aaatcccttg gaggtcaaac      3300
     ggtcaaggtt gaaaggaaac gggtatcgaa ggatcccaca caatgtcatc gctgccaatg      3360
     ttttgggcac acaaaaaatt attgtagaaa cccgtttaaa tgtatgaaat gtggccagct      3420
     gcacgccacg gtttcatgca ctaaacccaa aaaccttccg gctacttgtg caaactgcaa      3480
     tggaagccac gtaagcagct ataaaggatg tcccgctttc caagaagcaa agcaaagact      3540
     atctatcaac aaaattcaat ccctacactc acaacccacg caccttcaga ccccccgcaa      3600
     taaacatccc tacccaaaac ccacccacct tcagacgccc cgcaataagc agccctacac      3660
     acaccccctc cctcgcacat cagtaaacaa cacaaaacta cctgccaaaa gaatccaagg      3720
     aaagaagata tcgcaaagga atctatctat aaacaaacgc ttacacagaa tgaaaaaacc      3780
     gaggaaggag acaagcccgc cgacaactag caaaaaggtc ttggcctctc tagaagaaag      3840
     cagaaaaaac ccaaatagcg tcctaaaccc ggccaacacc catctcactc atttccgccc      3900
     acccccttta gcacaaaata ttcctaatga cgaacctaag gagctgagtg gggagcaata      3960
     ccttctaaat cgcattgaag ggatggaaaa gaagatcaac aaccttcttg aaatcgtcac      4020
     ccgcctacta agacaaggaa aagactgtcc aaagtctcca aaaaatcctt tccgagatcc      4080
     aatcttcgtg taaatgctct ttctagtaac atcagaaagt gacgtttcct atgactcggg      4140
     ctgacaacag ggacatcctt aaaatcgctt tctggaatgc tggtgggatt aacaataaaa      4200
     tagatgagct taagctgttc attctaaata ttgatgccca cataatcata gtcaccgaaa      4260
     ctagactaga caacaattct accaaactag agctgccagg atatttcaca tacttagccc      4320
     aaaatcctgt ctctagcaag agaggagggg tcgctactat agtaaacagc agtatccgac      4380
     acatggccct aaaaccgatc gaaaaagaat gcatacaaag cgccccaata gtcctgctgc      4440
     ctgaaaacaa cagacgcagc gaaatgatag taatagcatc tgtctactgt ccgccctcgc      4500
     taaggtggtt gccccaccac tttactgacg ttctcaattt tgcagagaaa actttaggag      4560
     ggcagaccaa gtttatccta tgtggcgact ggaatgcaaa acatagacaa tggggttgta      4620
     cacgcgcctg ccaacgtggc accgcactct acgaagcagt ccaagccgac tccactgcag      4680
     agatcattgc cactggctgt gctacacatt tcccacatga cacaagaaaa aacccgtcag      4740
     caatagattt ctccatttgc aaagggcttg gcaggtttga aaaaagaatt tcttcagggg      4800
     cggatctatc ctcagaccat cttcccatct tgttagagat aaacctagac acaaacaccc      4860
     tcttcttgca aaaacaaaac aacaatatac tcaagaaaaa tacaaacatc gagctgttta      4920
     agaaagttct agaaagaaag atactattaa acactgagat aagggtagca gaagatataa      4980
     atgacgccat aagcaccttt atgaaaaaca tcaaggactc ggctgcggaa tcaactccct      5040
     ccccaagaat acgtgacaac cccagaagaa gacataggca agccaacaga aacagtcata      5100
     ccctcgcact agacgaaaac acaagcagac tgcttgagga aaaacgcata ttaagtagag      5160
     ttttcaaagc taccaaaaat tacgaggaca aagctaaact aaaggcagct gaaaaccgac      5220
     taaaaaaagc gataaaaata ttgagagaaa acagaatcaa tgagcaagtt gaaggaatag      5280
     atacaagtaa cccggacaga atgagaaaaa tgtggaaact gctagatgaa gggaaaagga      5340
     caaatcagcc taattttccc ctcaaattag aaacccaaaa aggacccaaa tggacaaaaa      5400
     cgattaagga gacaacagaa acatttgtct cccacttgga aggaagattt aagccaaaca      5460
     ataatgtacc tgattaccac atagatagag tcaatactgg actaagaata attaaggaaa      5520
     gcatgctaac tgaacgacat aatctgaaca aaaaccccca taaccaacct attactctaa      5580
     aggaattaaa tgacgaaata aaaaacttaa agaatagtaa agcaccggga aaagacctta      5640
     taacaaacca gctaataaaa accctaccga ctaaagctac cctttacctt atcctaatct      5700
     ataactccat acttagacta ggatactacc cagaagcctg gaaacatgcg caggtaaaaa      5760
     tgattctcaa gccagggaaa agtgcaaacg agccaaggtc atataggccg attagcctac      5820
     tctcgggact ctcaaaaatc tttgaaagac tactcttaaa aagacttttt aaggtagatt      5880
     tattcaaaaa agctattcct ctgcaccaat ttggctttag aaaagaacac ggatcggagc      5940
     agcaaatagc cagggtcacc cagttcattc ttgaggcctt cgagagaaag gaatactgct      6000
     ccgcggtctt ccttgacatc tctgaggctt tcgacagggt atggcacgaa ggccttttac      6060
     ttaaattagc taagatccta ccttacaact tgtacattat actggagagc tacctaacaa      6120
     atagaacgtt cgaagttaaa gaccaagctg gagagacttc gagaacagga caaattggtg      6180
     ctggtgtgcc tcaaggaagc aatcttggac cactactcta ctctatcttc tcctcagaca      6240
     tgccccttcc atatatctac cgcccctcac caacagaaag aatcatgctc tcaacatacg      6300
     cagacgacac tatagtcctc agctcagaca cactagcaac tgccgctaca agaaacaacg      6360
     aaaactacct caagtcattc tcggactggg cggacaaatg gggtatatca gtaaacgctg      6420
     ctaaaaccgg acatgtcatt tttacattaa aaaacgactt acctacaagt ctaaggacta      6480
     tgaagatcaa gggtcaagta ataaagattg aaagcaaaca atcatacctt ggcgtaatcc      6540
     ttgacagcaa gctaaccctc agctcccacg tcacaaagct gatgggcaaa tacactacag      6600
     cctacagaaa aatgacatgg attctaaaca gaagaagcaa actccctacc aagactaaaa      6660
     tgctgatcct taagtcagtc ctttcaccaa tatggcagta tgccatagca gcttggggtc      6720
     cccttgtgac ggatgcacag ataagacgga tccaagtcga ggaaaatagg aaaatgagag      6780
     acatatgcag agcgggtaga tacacgagca accaaactat aagggaccgc tatggaatca      6840
     aaacagtaga agaattctat caacaggcac tccacaggtt ctcagaaaca ataaaatctc      6900
     acccaaatat agctgtacgc aggatattca caaggcacta tatcccgaac agactagaaa      6960
     gaagcaggca gaggtacttg aaaatgacaa atgaacacat cacgcaaaaa cagactggac      7020
     aaacactctc acctaaactc ctaaaaatcc ctgatctaaa tgactgcaga acccttaaaa      7080
     agcggaatga aagagataaa ataaggcaaa cccatctaat tgaactcccc accctgctga      7140
     gactagagga agaagaggaa gagcttagaa gaataaaaaa acaggaagag agggaaagaa      7200
     gggaaaagga aacccaaaag tggcctccag acagatggtg tgaattagaa attaacctat      7260
     ataataagca atatagaagg ggcgatctaa ccaggcagga aatcatacaa aaatttagag      7320
     gacaaccact aaatgtacag aggataattt tacccgacta taaaggagac caggaacaca      7380
     attaaaagta aatcatggga aagcagggga aaaaaaacag aagtaacaaa atggcggaag      7440
     gggtggcaaa atatatataa aaataagaaa agatagaaat aaaaaggcta aaggctcact      7500
     tacaggttaa ttcaaaaggg aaacgtgctt acatatctaa tggtaaaaac taacttataa      7560
     cacctactgg atgacatagt gaggatgcca caggttgcgc acttgaatca cgctttcctg      7620
     gcgagattgt taaggcatca ccgggatccc gtctctcttt cctaactgga ggactcatgc      7680
     ctgaaatctt ttccgcttca ccggcacctg atggccatat ctgctactgc gccttgcgtc      7740
     cacggacgct ccttcctgaa agaaagagaa tttgttttag ttttcctttc tcttcttaaa      7800
     aatataacaa aaacagcagc agtagccgac caacaacata cttagcttac caaggcagca      7860
     gcaatgatac caacagaagc cctacagtgt gctgaacaat atgccgccca cgcccaccac      7920
     ttctggaact caggaatggg gggtacggaa tgccggaaac tggaggattc gcctcaaatg      7980
     ttacgcttac atctttgagc aaatcgcctg cctcctcgtc taacggcccg gcgtcttggt      8040
     acgcccagaa gtagcagcgg tagcaggatt agcagcctcc acagagatat gttcatccca      8100
     gcatcagtcc agttggcatt gtgatgccgc cgtagcgtac gccctcagag acccgactgg      8160
     aatcccagga caagagacgg cagcacgcct gggcttaggc gcgggacaac atgcagagat      8220
     tcgtcaatga gaatggcggc actggaatca cctttcagct gagcgggata atgagtcggc      8280
     aacgcaccgc actatcagca gcaataacaa catcggcaga tgacctggaa gaaaggaaaa      8340
     aacatgtatc agtcttttct tttctttttt tttcccatta gcatgcgttt ttaaattcca      8400
     ttcctgaaaa ccggcgtttt cctgtaaaag acactggacg gcggcgtttg ttttaaatgc      8460
     aaagattgga tgcttgcatc agggctgacg tccttgaata gccgatgcct tgtaattgcc      8520
     tgcatagccg cggaggtcct gatgacggat gctggcctgt atttggccac cactccgatg      8580
     ccatgacagc agcaacagca gcggtttttg caaatgagag ggatcaggag gcggcaacac      8640
     attcacccgt agcagcaaca acaagcagtg gtagcatcag cagggagtct tctcgccaca      8700
     atagccattt ggaaatttct cgacgacccg acttcctgct tggcccatgg tcaatcacac      8760
     tggaccagtt aacagcggcg ttttaccctg gaagaaagaa aacttgtatt attcattccc      8820
     ttttctctca cagttgggta tttaagtgca ttcctggcca acctagcgtg tctcctggca      8880
     atgacgtcgg actcaacgca tgcttccctt ccgacacagt aaggatgttc gcatctgggc      8940
     tgacgggcca ggccggtccg ttgccataca tgctagcgtt tccgcggcgg cgtagtgaac      9000
     atcaaaccgt ataatggcga agacgacgat gatccggccg gatggcagct cgacgacggt      9060
     agcaggccac catgcccgcc agcccgcagc taggatagca gcaacatcag cgtcttatta      9120
     acgcgaacgg cggcactggc ccttagctga ccagctgcaa caacatcagc gacgcagtct      9180
     ccaccagcag caacaacagc agcggcgctt gcgacagcag cagcagggaa tggttctgcc      9240
     gcagtcgcct attgctgcct ataaagagca ttccttgcca attggctttc tgtacgacga      9300
     cgatgatcct gcggacaaat ccacctttcc ggacgcctga gtattatggc gagcctgctg      9360
     atcattgttt ctccgactcc ttacttgacc actggacaat catacaatca ccggcttttc      9420
     acatctggaa gaaagaaacc tggattagta tttgcccttc agatttgtat gaaactgcat      9480
     ttctggccaa ccggagtgtt tcctgcagac gacgctggac tgcgacgcac ttttttctac      9540
     caacacagat gggacgcttg catcagatct gacgggccag actggccgat gcctggtaca      9600
     cgatggcatc tccgcggcgg cgagatgtgc agcgacgctg aaagcaataa taattctttt      9660
     actttgcagt atcaaaaatg agaagccaca tcacaattta catcagcaaa aattacacgt      9720
     gatatctttt tcttttgcct aggagtagtg agacctgcta ccaaaatgac cagtaatacc      9780
     ggctaacgga agcgagatat cgataatcat tctggcggta aaatagccag aacatcgata      9840
     accagctgtg cattttccct tcgatttatc gaagtcaaat agcccgccta ggctatcgga      9900
     ccggatcggc aagtcagtag tgattaaaaa tccggcagag gcgcctgtgc agcagctacc      9960
     caaagtgaac acgacgaaac gcaacaacaa aatggacgga cataatggag atcaaagtga     10020
     aggatgggca acagtgctat ctatctcctc ggatgatagt aactccttgt cgtcgctgca     10080
     tatataaaat aataaatttc ttaaaataat ttcatcgctg gattcctgcg ccaccataaa     10140
     ttacttatag aatacactta acactgtacc cactaatgct aaaaattttc ttatacaatt     10200
     ttactttaaa gctaaaacta cttaaactat ggcgcgtaaa acggccgtca aaaatatcca     10260
     aaaattgtac ttgccataaa caaattctaa cataatgtaa atcctaaatc gtaaaatcat     10320
     ggcgaacata accgccgcca agcaaatcaa aaaatgttcc tagaaattgt aaatcttaaa     10380
     cctacttctc taactaaagc gcgcacaact gccgctgatc cgaaattgta aaatgccata     10440
     aattgtaact atatatttta taaaaaaaat cagagtacaa taaaatgaca gcgccgaaag     10500
     gcactgaaaa tatttaaaaa aaaaaaaaac tgccgctgat ccgaaattgt aaaatgccat     10560
     aaattgtaac tatatatttt ataaaaaaaa tcagagtaca ataaaatgac agcgccgaaa     10620
     ggcactgaaa atatttaaaa aaaaaaaaaa aaaa                                 10654
//
ID   TART_DV     repbase;    DNA;    INV; 15099 BP.
XX
AC   AY219709;
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   15-OCT-2005 (Rel. 10.11, Last updated, Version 2)
XX
DE   Drosophila virilis telomere-associated non_LTR retrotransposon
DE   TART.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element;
KW   TART non-LTR retrotransposon; TART_DV; gag domain; pol domain.
XX
NM   TART_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-15099
RA   Casacuberta E. and Pardue L.M.;
RT   "Transposon telomeres are widely distributed in the Drosophila
RT   genus: TART elements in the virilis group.";
RL   Proc. Natl. Acad. Sci. USA 100(6), 3363-3368 (2003).
XX
DR   Genbank; AY219709; Positions       1   15099.
XX
FH   Key           Location/Qualifiers
FT   CDS           144..3992
FT                 /product="TART_DV_1p"
FT                 /translation="MTGLQTHSTIDLESDHLPIHIGLRVGRFPYKQTTMRL
FT                 LPINANVKKFQNHLDKNVRLNTEIISGPDIEDAIDILNKNIYNASLAATHP
FT                 PRRHQQQQRQGTNTNRMNHGRFKLTNETIRLLAIKRQRKREHMVMRTPLTR
FT                 SRLSQAQNKLKKALRMDKKKQTNKMFEQIDATDRYKIQKLWRITNNIKRQP
FT                 EPNWPLKIQATDNNNSRSNRTQWTKTSKEKAEVFAAYLEQRFSPIFSNTAE
FT                 YRLQVNNEINTRQQTNDCDSGAGVAGVIPFRPITYTEVTKEIGCLTIKKAA
FT                 GIDNIDNRVIKALPKKAILYLVMIYNCILRHGHFPRQWKCAAIKTILKPGK
FT                 PTEDVASYRPISLLAGFSKIFERLLMYRLYECSEFAKAVPLHQFGFRKDHG
FT                 TEQQLARVTQFILSAFEKKQYCSAVYIDIREAFDRVWHEGLLLNLARYCLI
FT                 GCIMVLKSYLLDRTFIVHGNEGIKSRIGKVSAGVPQGSVLGPILYIIYTSD
FT                 MPLPHIATPPNPTTTAATITNTETSITNPYNCSMLLSTFADDTVIMSSADI
FT                 LQTSYSANQTYLRQFTIWCNRWCIQINDSKSAHVVHTLRNLNSRMNYLTPR
FT                 LNGQEIPSKPRQKYLGVHLDRKLHMQHHVTQLRCRLKALYNKLEWLIGNKS
FT                 VLSVECKITIYKQMIAPIWRYALPIWGAMISDTQLRRIESTQNWILRKIVK
FT                 ASWWTRNKDIRDTYDIGTVDEIFHTTSKRFADSLAIHPNANARKLIASPYV
FT                 PIRLDRQRYSLQLQQHVRPLQQLVQQSQEQQQLPTLLRMELEEEEANSLRM
FT                 QQQQQQQTPQQQPARFSEMRINSLRRHYREGRITLEELKLAIREQPLVIQQ
FT                 LVLPRELAIQIYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQ
FT                 QQQQEQQQQQQQQQHQYQQQHQQQQQQQIQQQQQQLEGLQHQPNQSPDVEI
FT                 VLDTPQQQQEQQLERPLPQPQQANLQQQRLTEDEQQLEHRLERLRQQLERE
FT                 MDEAANNEPTQQQRTPEQQQSNQQQHTIALTENKNTNINPSNSVCANITNF
FT                 SISQSIIIAPYSLINIATDAPWQQNQPTTTQQLRQQHSNLHQQHLQQQREV
FT                 VEAPSSNNAQSTVRGAKRRRSSSTSCIEPKRRSPAAPDNQQQRQLHTLLGK
FT                 RHSGGPAQHNCWPPKRQKLVQQQQQRQACLRRTRLGTWQLQMPHRLGIWLL
FT                 LSCFGMQTHHKVPQKLVWAPPADYGQSSTNGRHLQIARRRPWHSWQRLQRR
FT                 WSNCGRQTHRKARPYNILIHET"
FT   CDS           8003..12604
FT                 /product="TART_DV_3p"
FT                 /translation="VKSMMADTPLTLLVTPQLLQQHICPTLTVHCLTGEGQ
FT                 TLFQMTNHSSDQYGNSFKIAYWNAAGVRNKLNELEVFMNRHKIDIMMLVEL
FT                 RLGPSALNPGPPITINGYHTYAATRPPPHHRCGGVATLVKHGIKHIALEAI
FT                 VFESMQSAPVAVTLAKNETIVLAPIYCPPQYNWSADMFAKLFQHFEKLSGS
FT                 GFILCGDWNAKHSWWGNQRACRRGVELLRSIHSNKKLNILATGGATHFPYT
FT                 SRNRPSAIDIAVYRALTMTGLQTHSTIDLESDHLPIHIGLRVGRFPYKQTT
FT                 MRLLPINANVKKFQNHLDKNVRLNTEIISGPDIEDAIDILNKNIYNASLAA
FT                 THPPRRHQQQQRQGTNTNRMNHGRFKLTNETIRLLAIKRQRKREHMVMRTP
FT                 LTRSRLSQAQNKLKKALRMDKKKQTNKMFEQIDATDRYKIQKLWRITNNIK
FT                 RQPEPNWPLKIQATDNNNSRSNRTQWTKTSKEKAEVFAAYLEQRFSPIFSN
FT                 TAEYRLQVNNEINTRQQTNDCDSGAGVAGVIPFRPITYTEVTKEIGCLTIK
FT                 KAAGIDNIDNRVIKALPKKAILYLVMIYNCILRHGHFPRQWKCAAIKTILK
FT                 PGKPTEDVASYRPISLLAGFSKIFERLLMYRLYECSEFAKAVPLHQFGFRK
FT                 DHGTEQQLARVTQFILSAFEKKQYCSAVYIDIREAFDRVWHEGLLLNLARY
FT                 CLIGCIMVLKSYLLDRTFIVHGNEGIKSRIGKVSAGVPQGSVLGPILYIIY
FT                 TSDMPLPHIATPPNPTTTAATITNTETSITNPYNCSMLLSTFADDTVIMSS
FT                 ADILQTSYSANQTYLRQFTIWCNRWCIQINDSKSAHVVHTLRNLNSRMNYL
FT                 TPRLNGQEIPSKPRQKYLGVHLDRKLHMQHHVTQLRCRLKALYNKLEWLIG
FT                 NKSVLSVECKITIYKQMIAPIWRYALPIWGAMISDTQLRRIESTQNWILRK
FT                 IVKASWWTRNKDIRDTYDIGTVDEIFHTTSKRFADSLAIHPNANARKLIAS
FT                 PYVPIRLDRQRYSLQLQQHVRPLQQLVQQSQEQQQLPTLLRMELEEEEANS
FT                 LRMQQQQQQQTPQQQPARFSEMRINSLRRHYREGRITLEELKLAIREQPLV
FT                 IQQLVLPRELAIQIYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
FT                 EQQQQQQQQQHQYQQQHQQQQQQQIQQQQQQLEGLQHQPNQSPDVEIVLDT
FT                 PQQQQEQQLERPLPQPQQANLQQQRLTEDEQQLEHRLERLRQQLEREMDEA
FT                 ANNEPTQQQRTPEQQQSNQQQHTIALTENKNTNINPSNSVCANITNFSISQ
FT                 SIIIAPYSLINIATDAPWQQNQPTTTQQLRQQHSNLHQQHLQQQREVVEAP
FT                 SSNNAQSTVRGAKRRRSSSTSCIEPKRRSPAAPDNQQQRQLHTLLGKRHSG
FT                 GPAQHNCWPPKRQKLVQQQQQRQACLRRTRLGTWQLQMPHRLGIWLLLSCF
FT                 GMQTHHKVPQKLVWAPPADYGQSSTNGRHLQIARRRPWHSWQRLQRRWSNC
FT                 GRQTHRKARPYNILIHET"
FT   CDS           4848..7958
FT                 /product="TART_DV_2p"
FT                 /translation="MQKPTVSKSPPKSPHNASEITANSAVPPHRATEECSI
FT                 SERAKSELSQLQQQLTKNPQKQLSREHRRQQLLRLCEEEERLMPDVPAQQP
FT                 TLTLKHKPKLKTVLANSSPPSSAPLRMSLTKSSKAKARKESQSSACREKSP
FT                 EENTYVNVLESDDESDIAANKNYDQPQQQTTIAQVHNFNTNTSITSTPKAA
FT                 SHCDPSPNVSAHEVELHNVDNTREASYVNNIDELTDVFDDEDDDDDCYRPA
FT                 AVINSSVADMLNRTTTVEHNSTATANRGEILANVKTSDAFAANKINSITFE
FT                 KIEPIPQTITPTVAKGPKFNCSMLPTTSLSAKKSLKRKGTLPQQSKQKRAQ
FT                 TLAVQGNSRPGMKIQDFLKSSTRVTKATNKAAIINKYKKSNRNTKKVNPSS
FT                 STKLNNSSMDIDLDSSDISANNIGSDDDIVQIQSNAQEVTNHATKVQQQQQ
FT                 HRQQQQHHQQQQQQQQQQPTKSTKIPTIFLPSISDIQQIIDMLNNTVGANK
FT                 YTTKCTQNDGVRVQCSDLLSYNAAIALLGANTEIQMHTHQMRSERGYRVLL
FT                 KNVHHSTPCEQIRAELAKHGHTVRFASVIKHRFERRPLNMFEVELAPNGDT
FT                 NDKVLELKTLGNQHIEVERQLKRDEPVQCHRCQSFGHSKNYCRRPFACLKC
FT                 GEQHPTTTCTKPRNTPAKCVNCKADHIASFKGCSVYKMEREKLAANRVRAA
FT                 IDRQQQHQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQNRQLQQ
FT                 HQQQQQQQHRQLQQHHQQQQQLQHQHQQPQYLAINTSAPSGIKSTKERKQQ
FT                 QQQLRQQQQKQQQQQQQQHQQLKPNNQLTYSQVASGQANTSLSHNPAMQHL
FT                 KKYQQQLQLEQQQQQRQQQQQQQQQLQPEQQQQLQRQQRLRQQQLPEQQKR
FT                 QQYQRQQEQQSHEQQQRHQQQSQQQQHRQQADSPLLEALQQNVISINEMSK
FT                 KIDMLISLLLTMAASNTNINKQGEQQTIPLTTSTSDTLNNVNKKNNFPNLM
FT                 STLISTAQPINNSQSANANCEHIATDSSQYV"
XX
SQ   Sequence 15099 BP; 5464 A; 3785 C; 2888 G; 2962 T; 0 other;
     gtcgacgagg ggtagagctg ctaagaagca ttcacagcaa caagaagctg aacattcttg        60
     ctacaggtgg ggctacacac ttcccataca caagtaggaa caggccatcc gctatcgata       120
     ttgcggtcta cagggcatta acaatgaccg gactacaaac acactctaca atcgatctag       180
     aatcggatca tctacctata catataggcc tcagagtagg ccgattcccg tataaacaaa       240
     caacaatgcg attgctaccg ataaatgcaa acgtaaaaaa atttcaaaac catttagata       300
     aaaacgttcg tcttaataca gaaataatat cgggacccga tattgaagac gccatcgaca       360
     tattaaataa aaacatatat aatgcttcct tagcagcaac acacccacct cgtagacatc       420
     aacagcaaca aagacaaggc acaaatacaa atcgcatgaa ccatggccgt tttaaattaa       480
     caaacgaaac aattagactt ttggcaataa aacggcagcg caagagagaa catatggtta       540
     tgcgaacacc tctcacgcga agccgactta gccaggccca aaacaaacta aaaaaagcgc       600
     ttcgtatgga caagaagaaa caaacgaaca aaatgtttga acaaatagat gccactgatc       660
     gctacaagat acaaaagctt tggcgcatca caaacaacat caaaaggcaa ccagagccaa       720
     attggccact taaaatacaa gcgactgaca acaacaacag tcgcagcaat agaacacaat       780
     ggactaaaac tagtaaagaa aaggctgagg tcttcgctgc atacctggag caacgtttca       840
     gccccatatt ctcaaatacg gctgaataca gactccaggt gaataatgag ataaacacta       900
     gacagcaaac taacgattgc gacagcggcg ctggcgtcgc tggtgttatc ccttttcgcc       960
     caattacata tactgaggtg acaaaagaga ttggctgctt gacaataaaa aaggctgcag      1020
     gcatcgataa catagacaat agagtcatta aagcactacc aaagaaagca atactgtacc      1080
     ttgtcatgat atacaactgc atactcagac atggccattt cccgcgacag tggaaatgcg      1140
     ctgccataaa aacaatttta aagcctggaa aacccacaga agatgtcgcc tcatatcgac      1200
     caataagcct gcttgcaggt ttctccaaaa tctttgaaag gcttctcatg tacaggctct      1260
     atgaatgctc tgaatttgca aaggccgtgc cactacatca atttggcttt cgcaaagatc      1320
     atggcactga gcagcaacta gcacgggtaa cccaattcat cctgagtgca tttgaaaaga      1380
     aacaatactg ctcagccgtc tatatcgata tacgcgaagc atttgatcga gtatggcacg      1440
     aaggattgct cttgaacttg gcaagatact gcctaatagg ctgtataatg gttctcaaga      1500
     gctatctact tgatcgcaca ttcatcgtac atggaaacga gggcattaaa tctagaatag      1560
     gcaaagttag cgctggagtg ccccagggga gcgtacttgg gccaattcta tatatcatct      1620
     acacatcaga tatgccatta ccacacattg caacacctcc caatccaaca acaacagcag      1680
     caacaataac aaatacagaa acgtccataa ctaacccata caactgcagc atgctactgt      1740
     caacgtttgc cgatgacaca gtcataatga gctctgctga catactgcaa acatcataca      1800
     gtgcaaatca aacgtatctg cgccaattca ccatttggtg caatcgctgg tgcatccaaa      1860
     ttaatgacag caaatcagct catgtagtac atactctacg caatttaaac agccgaatga      1920
     attacctgac tccacgactc aatgggcaag aaatcccctc taaaccaagg caaaagtacc      1980
     taggtgtcca tctggaccga aagctccaca tgcaacacca tgttacgcag ctacgatgcc      2040
     gtcttaaagc actctataat aaactagagt ggctaatagg aaacaaaagc gtactctctg      2100
     tagaatgcaa aatcactatc tacaagcaga tgattgcgcc gatatggaga tatgctttgc      2160
     cgatctgggg tgccatgatc tctgacacac agctacgccg aatagaatcc acacagaact      2220
     ggattctaag gaagatagtg aaggcctcct ggtggactag aaacaaagac atacgtgata      2280
     cttacgacat aggcacagtg gacgaaatat tccatactac aagcaaaaga ttcgccgact      2340
     cacttgctat tcatcctaat gccaacgctc gtaagctaat cgcaagtccg tatgttccaa      2400
     ttcgtcttga tcggcaaagg tatagtctgc aactacaaca acatgttcgc cctctacagc      2460
     aactagtgca gcaatcgcaa gaacaacaac agctgccaac tctgcttcgc atggagcttg      2520
     aagaagaaga agcaaactcg ctcagaatgc aacagcagca gcaacagcag accccacaac      2580
     aacagccagc cagattcagc gaaatgagga taaattcgct aagaaggcac tacagagagg      2640
     gacgaattac gctcgaagag ctaaaactag caattaggga acagccattg gtgattcagc      2700
     aattagtact gcctcgcgag ctggctattc aaatatacca gcagcaacaa cagcagcagc      2760
     aacagcaaca acagcagcag caacagcaac aacagcagca gcaacagcaa caacagcagc      2820
     agcaacagca acaacaccag cagcaacagc agcagcaaca gcaacaagag cagcagcaac      2880
     aacagcagca gcagcaacac cagtaccaac agcagcatca gcaacagcaa caacagcaaa      2940
     tacagcagca gcaacaacag ctcgagggac tccagcatca gccaaatcag tcgcctgacg      3000
     tcgaaatagt gctagataca ccacagcagc aacaagagca acaactagaa cggccacttc      3060
     cacaacctca gcaagccaat ttacaacagc aacggctaac tgaggacgag cagcagcttg      3120
     agcaccgact tgaaagactc aggcagcaac ttgagcgcga gatggacgag gctgcaaata      3180
     acgagccaac tcaacaacag cgaacaccag agcagcagca atcaaaccaa cagcaacaca      3240
     caatagcctt aactgaaaat aaaaatacaa atattaatcc aagcaactca gtctgtgcca      3300
     atataacaaa tttttctatt tcacagagca taataatagc cccatacagc ctcataaaca      3360
     ttgccacaga tgctccttgg caacaaaatc agcccacaac cacacaacag ctccgccagc      3420
     agcactcgaa ccttcaccag cagcacctac agcaacaacg ggaggtagtg gaggcgccca      3480
     gcagcaacaa cgcacagtca acagtcaggg gggctaaaag aagaagaagc agttcaacaa      3540
     gctgtattga acccaaaaga cgctcacctg cagctcctga caaccagcaa cagcggcaac      3600
     tccacactct actcggcaaa aggcactctg ggggaccagc tcaacacaac tgctggcctc      3660
     caaagcgcca gaagctcgtg caacagcagc aacaacgtca agcatgcctt cgcagaacac      3720
     ggctgggtac atggcagctg caaatgcccc acaggctggg aatatggctc ctactctcct      3780
     gctttggcat gcaaacacac cataaggtgc cccagaagct tgtgtgggca cctccagcag      3840
     actacggtca atcctcgacg aacggcagac acctccaaat tgccagaagg cgcccgtggc      3900
     actcctggca gcggctccaa cgtcgatggt ccaattgcgg gcggcaaaca cacaggaagg      3960
     ccaggccgta taacatatta atccatgaga cctgaaatag ataaataata agtaaatttg      4020
     caccaactag aattataaat tccaacaaat ccttaaattc gcccctctgg caaactatgt      4080
     ttacaattta actcaatcaa tatgttaact cagctgttca taacgcaatc gaaagcagcc      4140
     ctgataacat taacagaggt atgtaataac agaaccattg cagtaattgc tcaactgttc      4200
     tgaacgcaat cgccaacaac cctgataacg ttagacagag gcactgttaa taacagaaat      4260
     agtaccgcca acgtgctaaa aattcaaata agcctgctca agcatagtat taagtaatgt      4320
     taaatgtaaa aaataactgt taaatgttta tttatcgtaa ttcgtcacaa ttttctttta      4380
     tgttgtgata tgcatgtaaa attttgttaa aatatgtcat acatgccagt aatttgtcag      4440
     ctagtccgtt tcacaattag acctatttcg ttccaattct gtctcatata ttgcattgga      4500
     actagaatta agcaatgaaa aagacaataa aatgcgacta ctagcttaat cgctagaagt      4560
     tcgccgtagc gcacgcatgc gcagcaattt aaaaagcagc aatttaaaaa agcaatttaa      4620
     acaagcaatt taaaaaaaaa aaaaaaaaag caatttaaaa aaaacacaac ttaaaaatca      4680
     gaatttttca attctaataa ttaaccaagc ttgcaaatat atttgtgaag ttatctgagt      4740
     aattgctaaa caggcatagt ggcaagcaaa tacaataaat atttaaaagg tgcaatagtg      4800
     gtaaagacaa acataactgc accagaaata atatataaag tgcataaatg caaaaaccaa      4860
     ctgtgtctaa aagcccgcct aaaagtccgc ataacgcttc tgaaattacc gcaaactcgg      4920
     ctgtcccccc ccaccgcgca accgaagaat gcagcataag tgaaagagcg aaaagtgaac      4980
     tttcacagtt gcagcaacag ctcacaaaaa atccgcaaaa gcagctcagc cgagaacacc      5040
     ggcgacagca gttgctaagg ctatgcgaag aggaggaaag gttaatgccc gatgtcccag      5100
     cgcagcagcc gacgcttacg ctcaagcata agccgaagct gaaaacagtt ctcgccaact      5160
     cttcaccgcc cagctcggca ccgctgagaa tgtctctgac gaagtcgtcg aaagctaagg      5220
     caaggaaaga gagccaatca tctgcctgca gagagaaaag tccagaagag aacacctatg      5280
     tcaatgtgtt ggagtctgac gatgaaagcg acatagcagc caataaaaat tatgaccagc      5340
     cgcaacagca gacaactatt gcacaggtac ataatttcaa tacaaatact agcataacta      5400
     gcactcccaa agcagcctct cactgtgatc catcgccaaa cgtatcggca cacgaagttg      5460
     aacttcataa tgttgataac acaagagaag ctagctatgt taataacatt gatgaactaa      5520
     cagacgtctt tgacgacgaa gatgatgatg atgactgtta ccggcccgct gctgttatta      5580
     acagctcagt tgctgacatg cttaacagaa caactactgt tgagcataac agcacagcca      5640
     ctgctaacag aggggaaatt cttgcaaatg ttaaaacatc tgatgcattt gctgccaata      5700
     aaattaatag tattactttt gaaaaaatcg aaccaattcc acaaacaata acgccaacag      5760
     tagcaaaagg acctaaattt aactgctcta tgctacctac aacttccctg tctgccaaga      5820
     aaagtttaaa acgtaaaggt acactgccgc aacaaagtaa acaaaagcga gcacagacac      5880
     tggcagtaca aggaaactca cgaccaggca tgaagataca ggacttcttg aagtcatcaa      5940
     caagagtaac taaggcaaca aataaagcag ctataatcaa caaatataaa aaaagcaatc      6000
     gtaatactaa aaaagtaaac ccctctagca gcactaaact caacaacagc agtatggata      6060
     ttgacctgga tagcagcgac atatcagcaa ataacatagg ctctgatgat gacattgttc      6120
     agatccagag caatgcacaa gaggttacaa accacgccac caaagtccag caacaacaac      6180
     agcatcgaca gcagcaacaa catcaccagc agcagcaaca acagcaacag cagcagccaa      6240
     ctaaaagcac aaaaattcca acaatttttc tacccagcat aagtgacata caacaaataa      6300
     ttgatatgct caataataca gtgggtgcaa ataaatatac aacaaagtgc acacaaaacg      6360
     atggagtcag agtgcaatgc agcgacttac tatcgtataa tgcagctata gcactgctcg      6420
     gcgccaatac ggaaatacag atgcacaccc accagatgcg aagcgagcga ggataccgtg      6480
     ttttacttaa aaatgtccac cactccacgc catgcgagca aatccgagca gaattggcga      6540
     aacatggaca cacggttcgc tttgccagcg tcattaaaca tcgatttgag cgacggccac      6600
     ttaacatgtt tgaagtcgaa ctggcaccaa acggcgacac caacgacaaa gtactggaac      6660
     tgaaaactct gggaaaccaa cacattgaag tagaaagaca gctgaagcga gatgagcctg      6720
     tacagtgtca tcggtgccaa tcgtttgggc atagcaagaa ctactgtcgt aggccttttg      6780
     catgtctcaa atgcggtgaa cagcacccga ctacaacgtg tactaaaccc agaaacacac      6840
     ctgctaagtg cgtcaactgc aaggctgacc acatagccag ctttaaggga tgcagtgtgt      6900
     acaaaatgga gcgggaaaaa ctagcagcaa accgtgtccg ggcggcaatt gataggcaac      6960
     agcagcacca acaacagcag caacagcaac aacaacagca gcagcagcag cagcaacagc      7020
     agcatcagca acagcaacag caacaacaac agcaacaaca gcagcagcaa caacaacaac      7080
     aaaatcggca gctacaacaa catcagcagc agcagcaaca acaacatcgg cagctacaac      7140
     aacatcatca gcagcagcag caactacaac accaacacca gcagccacaa tacctagcaa      7200
     ttaatacttc agctcctagt ggaattaagt cgactaagga acggaagcaa cagcaacagc      7260
     aacttcggca acaacagcaa aagcagcagc agcaacaaca gcagcaacat caacaattga      7320
     agccaaacaa tcaactgact tatagccaag tagccagtgg acaagcaaat acgagcctca      7380
     gtcacaaccc agccatgcaa cacctcaaga agtaccagca acagctacaa ctggagcagc      7440
     aacagcagca acgacaacag cagcaacaac aacagcagca gctacagccc gagcagcagc      7500
     agcaacttca gaggcaacag cgactgaggc aacaacaact acctgagcag caaaaacggc      7560
     agcaatatca acgacagcaa gagcagcaat cacatgagca acagcaacga caccagcagc      7620
     aatcgcaaca acaacaacat agacaacagg cggactcacc actcttggag gcgctgcagc      7680
     aaaatgtgat aagtataaat gagatgtcca agaaaataga catgctaatt agcctgttgc      7740
     tcacaatggc agcaagcaac actaatatta ataaacaagg agaacaacaa acaatcccac      7800
     taacaacatc aacctctgat accttgaaca atgtcaataa aaaaaacaat tttcctaatt      7860
     taatgagtac attgattagc acagcacagc caataaacaa cagccaatcg gcaaacgcca      7920
     attgtgaaca catagccact gacagtagcc agtatgtata gagcgaacaa caccaacaat      7980
     gccagcgcga ctgccacatt gagtcaagtc aatgatggca gacacaccac tcacactact      8040
     agtgacacca caactactac aacaacacat ttgtccaacc ttaacagtcc attgcttaac      8100
     aggagaaggc caaacattat tccaaatgac gaaccacagc agcgaccaat atggcaactc      8160
     ttttaaaatt gcatattgga acgctgctgg cgttagaaac aaactaaatg aattagaggt      8220
     tttcatgaat cgacataaaa ttgatattat gatgctcgtc gagctacgat tgggccccag      8280
     cgctctcaat ccaggtcccc caattactat taacggctac catacatatg cggcaactcg      8340
     cccaccacca caccatagat gcgggggtgt tgccacttta gtaaaacacg gaatcaaaca      8400
     cattgccctg gaagcaattg tgtttgaatc catgcaatct gcaccagtag ctgtgaccct      8460
     ggcaaaaaat gagaccattg tcctagctcc aatttattgc ccaccgcaat ataattggag      8520
     cgctgacatg tttgccaaac ttttccaaca ttttgaaaaa ttgagcgggt ccgggttcat      8580
     tttatgtggc gactggaacg ccaaacattc ctggtggggc aaccaacgtg cttgtcgacg      8640
     aggggtagag ctgctaagaa gcattcacag caacaagaag ctgaacattc ttgctacagg      8700
     tggggctaca cacttcccat acacaagtag gaacaggcca tccgctatcg atattgcggt      8760
     ctacagggca ttaacaatga ccggactaca aacacactct acaatcgatc tagaatcgga      8820
     tcatctacct atacatatag gcctcagagt aggccgattc ccgtataaac aaacaacaat      8880
     gcgattgcta ccgataaatg caaacgtaaa aaaatttcaa aaccatttag ataaaaacgt      8940
     tcgtcttaat acagaaataa tatcgggacc cgatattgaa gacgccatcg acatattaaa      9000
     taaaaacata tataatgctt ccttagcagc aacacaccca cctcgtagac atcaacagca      9060
     acaaagacaa ggcacaaata caaatcgcat gaaccatggc cgttttaaat taacaaacga      9120
     aacaattaga cttttggcaa taaaacggca gcgcaagaga gaacatatgg ttatgcgaac      9180
     acctctcacg cgaagccgac ttagccaggc ccaaaacaaa ctaaaaaaag cgcttcgtat      9240
     ggacaagaag aaacaaacga acaaaatgtt tgaacaaata gatgccactg atcgctacaa      9300
     gatacaaaag ctttggcgca tcacaaacaa catcaaaagg caaccagagc caaattggcc      9360
     acttaaaata caagcgactg acaacaacaa cagtcgcagc aatagaacac aatggactaa      9420
     aactagtaaa gaaaaggctg aggtcttcgc tgcatacctg gagcaacgtt tcagccccat      9480
     attctcaaat acggctgaat acagactcca ggtgaataat gagataaaca ctagacagca      9540
     aactaacgat tgcgacagcg gcgctggcgt cgctggtgtt atcccttttc gcccaattac      9600
     atatactgag gtgacaaaag agattggctg cttgacaata aaaaaggctg caggcatcga      9660
     taacatagac aatagagtca ttaaagcact accaaagaaa gcaatactgt accttgtcat      9720
     gatatacaac tgcatactca gacatggcca tttcccgcga cagtggaaat gcgctgccat      9780
     aaaaacaatt ttaaagcctg gaaaacccac agaagatgtc gcctcatatc gaccaataag      9840
     cctgcttgca ggtttctcca aaatctttga aaggcttctc atgtacaggc tctatgaatg      9900
     ctctgaattt gcaaaggccg tgccactaca tcaatttggc tttcgcaaag atcatggcac      9960
     tgagcagcaa ctagcacggg taacccaatt catcctgagt gcatttgaaa agaaacaata     10020
     ctgctcagcc gtctatatcg atatacgcga agcatttgat cgagtatggc acgaaggatt     10080
     gctcttgaac ttggcaagat actgcctaat aggctgtata atggttctca agagctatct     10140
     acttgatcgc acattcatcg tacatggaaa cgagggcatt aaatctagaa taggcaaagt     10200
     tagcgctgga gtgccccagg ggagcgtact tgggccaatt ctatatatca tctacacatc     10260
     agatatgcca ttaccacaca ttgcaacacc tcccaatcca acaacaacag cagcaacaat     10320
     aacaaataca gaaacgtcca taactaaccc atacaactgc agcatgctac tgtcaacgtt     10380
     tgccgatgac acagtcataa tgagctctgc tgacatactg caaacatcat acagtgcaaa     10440
     tcaaacgtat ctgcgccaat tcaccatttg gtgcaatcgc tggtgcatcc aaattaatga     10500
     cagcaaatca gctcatgtag tacatactct acgcaattta aacagccgaa tgaattacct     10560
     gactccacga ctcaatgggc aagaaatccc ctctaaacca aggcaaaagt acctaggtgt     10620
     ccatctggac cgaaagctcc acatgcaaca ccatgttacg cagctacgat gccgtcttaa     10680
     agcactctat aataaactag agtggctaat aggaaacaaa agcgtactct ctgtagaatg     10740
     caaaatcact atctacaagc agatgattgc gccgatatgg agatatgctt tgccgatctg     10800
     gggtgccatg atctctgaca cacagctacg ccgaatagaa tccacacaga actggattct     10860
     aaggaagata gtgaaggcct cctggtggac tagaaacaaa gacatacgtg atacttacga     10920
     cataggcaca gtggacgaaa tattccatac tacaagcaaa agattcgccg actcacttgc     10980
     tattcatcct aatgccaacg ctcgtaagct aatcgcaagt ccgtatgttc caattcgtct     11040
     tgatcggcaa aggtatagtc tgcaactaca acaacatgtt cgccctctac agcaactagt     11100
     gcagcaatcg caagaacaac aacagctgcc aactctgctt cgcatggagc ttgaagaaga     11160
     agaagcaaac tcgctcagaa tgcaacagca gcagcaacag cagaccccac aacaacagcc     11220
     agccagattc agcgaaatga ggataaattc gctaagaagg cactacagag agggacgaat     11280
     tacgctcgaa gagctaaaac tagcaattag ggaacagcca ttggtgattc agcaattagt     11340
     actgcctcgc gagctggcta ttcaaatata ccagcagcaa caacagcagc agcaacagca     11400
     acaacagcag cagcaacagc aacaacagca gcagcaacag caacaacagc agcagcaaca     11460
     gcagcagcaa cagcaacaag agcagcagca acaacagcag cagcagcaac accagtacca     11520
     acagcagcat cagcaacagc aacaacagca aatacagcag cagcaacaac agctcgaggg     11580
     actccagcat cagccaaatc agtcgcctga cgtcgaaata gtgctagata caccacagca     11640
     gcaacaagag caacaactag aacggccact tccacaacct cagcaagcca atttacaaca     11700
     gcaacggcta actgaggacg agcagcagct tgagcaccga cttgaaagac tcaggcagca     11760
     acttgagcgc gagatggacg aggctgcaaa taacgagcca actcaacaac agcgaacacc     11820
     agagcagcag caatcaaacc aacagcaaca cacaatagcc ttaactgaaa ataaaaatac     11880
     aaatattaat ccaagcaact cagtctgtgc caatataaca aatttttcta tttcacagag     11940
     cataataata gccccataca gcctcataaa cattgccaca gatgctcctt ggcaacaaaa     12000
     tcagcccaca accacacaac agctccgcca gcagcactcg aaccttcacc agcagcacct     12060
     acagcaacaa cgggaggtag tggaggcgcc cagcagcaac aacgcacagt caacagtcag     12120
     gggggctaaa agaagaagaa gcagttcaac aagctgtatt gaacccaaaa gacgctcacc     12180
     tgcagctcct gacaaccagc aacagcggca actccacact ctactcggca aaaggcactc     12240
     tgggggacca gctcaacaca actgctggcc tccaaagcgc cagaagctcg tgcaacagca     12300
     gcaacaacgt caagcatgcc ttcgcagaac acggctgggt acatggcagc tgcaaatgcc     12360
     ccacaggctg ggaatatggc tcctactctc ctgctttggc atgcaaacac accataaggt     12420
     gccccagaag cttgtgtggg cacctccagc agactacggt caatcctcga cgaacggcag     12480
     acacctccaa attgccagaa ggcgcccgtg gcactcctgg cagcggctcc aacgtcgatg     12540
     gtccaattgc gggcggcaaa cacacaggaa ggccaggccg tataacatat taatccatga     12600
     gacctgaaat agataaataa taagtaaatt tgcaccaact agaattataa attccaacaa     12660
     atccttaaat tcgcccctct ggcaaactat gtttacaatt taactcaatc aatatgttaa     12720
     ctcagctgtt cataacgcaa tcgaaagcag ccctgataac attaacagag gtatgtaata     12780
     acagaaccat tgcagtaatt gctcaactgt tctgaacgca atcgccaaca accctgataa     12840
     cgttagacag aggcactgtt aataacagaa atagtaccgc caacgtgcta aaaattcaaa     12900
     taagcctgct caagcatagt attaagtaat gttaaatgta aaaaataact gttaaatgtt     12960
     tatttatcgt aattcgtcac aattttcttt tatgttgtga tatgcatgta aaattttgtt     13020
     aaaatatgtc atacatgcca gtaatttgtc agctagtccg tttcacaatt agacctattt     13080
     cgttccaatt ctgtctcata tattgcattg gaactagaat taagcaatga aaaagacaat     13140
     aaaatgcgac tactagctta atcgctagaa gttcgccgta gcgcacgcat gcgcagcaat     13200
     ttaaaaatta acggctacca tacatatgcg gcaactcgcc caccaccaca ccatagatgc     13260
     gggggtgttg ccactttagt aaaacacgga atcaaacaca ttgccctgga agcaattgtg     13320
     tttgaatcca tgcaatctgc accagtagct gtgaccctgg caaaaaatga gaccattgtc     13380
     ctagctccaa tttattgccc accgcaatat aattggagcg ctgacatgtt tgccaaactt     13440
     ttccaacatt ttgaaaattg agcgggtccg ggttcatttt atgtggcgac tggaacgcca     13500
     acattcctgg tggggcacca acgtgcttgt cgacgagggg tagagctgct aagaagcatt     13560
     cacagcaaca agaagctgaa cattcttgct acaggtgggg ctacacactt cccatacaca     13620
     agtaggaaca ggccatccgc tatcgatatt gcggtctaca gtggcattaa caatgaccga     13680
     ctacaaacac actctacaat cgatctagaa tcggatcatc tacctataca tataggcctc     13740
     agagtaggcc gattcccgta taaacaaaca acaatgcgat tgctaccgat aaatgcaaac     13800
     gtaaaaaaat ttcaaaacca tttagataaa aacgttcgtc ttaatacaga aataatatcg     13860
     ggacccgata ttgaagacgc catcgacata ttaaataaaa acatatataa tgcttcctta     13920
     gcagcaacac acccacctcg tagacatcaa cagcaacaaa gacaaggcac aaatacaaat     13980
     cgcatgaacc atggccgttt taaattaaca aacgaaacaa ttagactttt ggcaataaaa     14040
     cggcagcgca agagagaaca tatggttatg cgaacacctc tcacgcgaag ccgacttagc     14100
     cggcccaaaa caaactaaaa aaagcgcttc gtatggacaa gaagaaacaa acgaacaaaa     14160
     tgtttgaaca aatagatgcc actgatcgct acaagataca aaagctttgg cgcatcacaa     14220
     acaaccaaat acaaatcgca tgaaccatgg ccgttttaaa ttaacaaacg aaacaattag     14280
     acttttggca ataaaacggc agcgcaagag agaacatatg gttatgcgaa cacctctcac     14340
     gcgaagccga cttagccagg cccaaaacaa actaaaaaaa gcgcttcgta tggacaagaa     14400
     gaaacaaacg aacaaaatgt ttgaacaaat agatgccact gatcgctaca agatacaaaa     14460
     gctttggcgc atcacaaaca acatcaaaag gcaaccagag ccaaattggc cacttaaaat     14520
     acaagcgact gacaacaaca acagtcgcag caatagaaca caatggacta aaactagtaa     14580
     agaaaaggct gaggtcttcg ctgcatacct ggagcaacgt ttcagcccca tattctcaaa     14640
     tacggctgaa tacagactcc aggtgaataa tgagataaac actagacagc aaactaacga     14700
     ttgcgacagc ggcgctggcg tcgctggtgt tatccctttt cgcccaatta catatactga     14760
     ggtgacaaaa gagattggct gcttgacaat aaaaaaggct gcaggcatcg ataacataga     14820
     caatagagtc attaaagcac taccaaagaa agcaatactg taccttgtca tgatatacaa     14880
     ctgcatactc agacatggcc atttcccgcg acagtggaaa tgcgctgcca taaaaacaat     14940
     tttaaagcct ggaaaaccca cagaagatgt cgcctcatat cgaccaataa gcctgcttgc     15000
     aggtttctcc aaaatctttg aaaggcttct catgtacagg ctctatgaat gctctgaatt     15060
     tgcaaaggcc gtgccactac atcaatttgg ctttcgcaa                            15099
//
ID   Tc1-1N_TCa  repbase;    DNA;    INV; 1379 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   22-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Tc1-1N_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1379
RA   Jurka J.;
RT   "Mariner/Tc elements from insects.";
RL   Repbase Reports 9(3), 676-676 (2009).
XX
DR   [1] (Consensus)
XX
CC   Putative non-autonomous.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
SQ   Sequence 1379 BP; 432 A; 259 C; 266 G; 422 T; 0 other;
     cactgctcaa caattgaagt ggatattgag agaaattcta aattttggta attcattgta        60
     tattaaataa caaaaaacaa ttacaaaaaa taaatttata ctcgttcaca ctcaaaatta       120
     aaaactgaag aaaattgtcc gtaaaaaacc agcactagaa gtaaaacaca aaatcgaata       180
     aaacgtaacg aaacttaaaa gttctcaaat ttaaatttta catcatccct acaaaaacct       240
     tgtaccgtgt aggacctctc ctggctgtta gcagggctct tactcaattg gagagactca       300
     ttatcaaatt gttcataaaa tcttgaggta tcacttccca aattccttgc aatgcattag       360
     ccagctcttg taaagtgtca ggagactgct ggagctggtt taaatgccta gacatttcgg       420
     cccaaacatg ttcgatgcag ttcatgtcag gcgaacaggg tggccactcc attcgtgtaa       480
     tgccatggtg tcctatgcgc tcattcacaa atctggcgcg acgagggcgg gcattatcgt       540
     caataaatac gaatcgtttg cctattgcac caaaaaatgg cacaattatc ggctctatca       600
     ctctgtctcg atagcggaca gcagtcattg ttttattaat taagaccaat aggtctgtgc       660
     ggctattaaa acatatgcct ccccatacgc aaactacccg ccaccaaaaa ggcaagtgtg       720
     ggaggaataa tgcaagtctt gattaatgaa gcaatgactg ctgagcgttc tcgagataga       780
     gtaatagagc cgataattgt acaatttttt ggtgcaatag gcgaaagatt cgtgtttatt       840
     gatgataatg cccgccctca tcgcgccaga attttgaata agcgcataga acatcatggc       900
     attacacgaa tggagtggcc accctgttcg cctgacatga actgcattga acatgtttgg       960
     gccgaaatgt ctaggtgttt aaaccagctc cagcagcctc ttgaaacgtt acaagaactg      1020
     gctaatggat tgtaagaaat ttgggatcga tacctcaaga ttttattaat aatttaataa      1080
     tgagtctctt caatcgagta agagccctgc taagagccag gggaggacct acacggtact      1140
     aggtttttgt agggacggtg taaaatttga ctttgagaac ttttaagttt cgttaggttt      1200
     tattcatttt ttgttttact tctagttctg gtttttcacg gacaattttt ttcagttttt      1260
     aattttgagt gtgaacgagt ataaatttat ttattgtgac tgttttttgt tatttaatat      1320
     acaatgaatt accaaaattt agaatttctc tcaatatcca cttcaattgt tgagcagtg       1379
//
ID   Tc1-1_AG    repbase;    DNA;    INV; 1413 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   Tc1-1_AG is an autonomous DNA transposon - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Tc1-1_AG; Topi;
KW   Autonomous DNA transposon; mariner/Tc1 superfamily.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Grossman L.G., Cornel J.A., Salazar-Rafferty C., Robertson M.H.
RA   and Collins H.F.;
RT   "Tsessebe, Topi and Tiang: Three distinct subfamilies of Tc1-like
RT   transposable elements in the malaria vector, Anopheles gambiae.";
RL   Direct Submission to Genbank (JAN-1999).
XX
RN   [2]
RP   1-1413
RA   Kapitonov V.V. and Jurka J.;
RT   "Tc1-1_AG, a family of autonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 84-84 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~50 copies of Tc1-1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   This element has 24-bp terminal inverted repeats.
CC   This transposon is inserted preferentially into the GTAC target
CC   site (the TA target site duplication).
CC   Tc1-1_AG encodes the 332-aa Tc1-1_AGp transposase (pos.
CC   272-1267).
CC   RADPFKTCTRIKQELGLQVSAKTVSRRLHAAGFCARRPRKVRKLxPHHVEARIRFAEEHLAASIFWWSKI
CC   IFSDESRINLDGSDGIKYVWRFPNQAYHPKNTIKTLSHGGGHVMVWGCFSWHGTGPLFRINGTLNSEGYR
CC   KILSRKMLPYARQQFGDEEHYIFQHDNDSKHTSRTVKCYLANQDVQVLPWPALSPDLNPIENLWSTLKRQ
CC   LKNQPARSADDLWTRCKVMWERIxRSECRNLIGDMAKRCQEVIANNGHQIDR.
XX
FH   Key           Location/Qualifiers
FT   CDS           272..481
FT                 /product="Tc1-1_AGp"
FT                 /translation="MGRGKHCTPEERKHIQGLYRENVPIKTICKAFGRSRT
FT                 FVDNAIRSEATGKSTGRPRKTTADVDAQIVEMI"
XX
SQ   Sequence 1413 BP; 378 A; 327 C; 347 G; 352 T; 9 other;
     cactggtgga catwaaaata ggaaaaaaaa attttktgtg ttttttttgc rtacactagg        60
     tgtgtcatcg ccaacagttc gaggcgtact gaatttgcaa tagccgawtt ttgcctttta       120
     tactctcatt tttggtgcgc tacttatctg agttttgagt gccggcagcg ttttgcggca       180
     gtataaaagg agagccaaac cgtgttgygc ttcattcttc catcagtggt caaggtgaaa       240
     ggttgctatt taaaaattcc acaaaatcat catgggtcgc ggaaagcact gcacaccaga       300
     ggagcgaaaa cacattcagg ggctgtatcg tgagaacgtg ccaatcaaga caatctgcaa       360
     ggcgttcggc cgttcgcgga cgtttgtgga caacgccatt cgtagcgagg ctacgggtaa       420
     atcgacaggt cgtccgcgaa aaacaacggc cgacgttgac gcgcagattg ttgagatgat       480
     cagggcggat cctttcaaaa cttgcactcg tatcaagcag gagcttggtt tgcaagtttc       540
     ggcgaaaacg gtgtctcgcc gtttacacgc cgctgggttc tgtgcccgga gaccgmggaa       600
     ggttcgtaag ctgcwgccgc accacgtaga agcgcgcatt cggtttgccg aagaacattt       660
     agctgcatcc atcttttggt ggagcaaaat cattttttcg gatgagtcca gaatcaatct       720
     ggatggttcg gacggcatta aatacgtctg gcgctttcct aatcaggcgt atcatccgaa       780
     aaatacgata aaaaccctaa gtcacggagg cggccacgta atggtgtggg gttgcttctc       840
     ctggcacggc acgggtcctt tgttccgtat caacgggaca ctgaactcgg aagggtatag       900
     aaaaatactt agtcgtaaga tgttgccata cgcccgacaa caattcggag acgaagagca       960
     ttacatcttt cagcatgata acgactctaa gcacacatcg cgaacagtta aatgttattt      1020
     ggcaaaccag gatgtgcaag ttctaccgtg gcctgcgttg agtcctgacc tcaacccgat      1080
     tgaaaatctg tggtcaactc tcaagcgtca gcttaagaac cagcctgcac gttcagccga      1140
     tgatctatgg acacgctgca aggttatgtg ggaacgcata smcagaagcg aatgccgtaa      1200
     tctcatcggc gatatggcca aacgctgtca ggaagtgata gcgaataacg gtcaccagat      1260
     tgaccgttag aatgtgtttt cgctcagtgg aacaccgcaa cacctcctcc caacaaccac      1320
     ttaaacagtc cttttcaggg ctaccaaata tttctgacaa gaactatgtc tttcggtcac      1380
     agaaaaaagt tcctattttt atgtccacca gtg                                   1413
//
ID   Tc1-1_TCa   repbase;    DNA;    INV; 1630 BP.
XX
AC   .
XX
DT   21-MAR-2009 (Rel. 14.03, Created)
DT   21-MAR-2009 (Rel. 14.03, Last updated, Version 1)
XX
DE   DNA transposon: consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Tc1-1_TCa.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-1630
RA   Jurka J.;
RT   "Mariner/Tc elements from insects.";
RL   Repbase Reports 9(3), 677-677 (2009).
XX
DR   [1] (Consensus)
XX
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Tribolium
CC   castaneum Genome Project.
XX
FH   Key           Location/Qualifiers
FT   CDS           304..1317
FT                 /product="Tc1-1_TCa_1p"
FT                 /translation="MPTGTPIGKELKERVIDAFLNNEKQADIARRFQLPRY
FT                 SVSKIIIRYNERGHLNNNPKSGRPRKTTINMDRRIKRISENDPWKSASKII
FT                 AEIPEVGVSTRTIQRRLVAAKLFSRRPAKKPLISERNRRARLQFAREHLNW
FT                 TVQDWRKVLFSDETRYKLFNSDGMKRVRRPINTRFNPKYVTPTVKHGHGSV
FT                 FLWGCFSWNGVGPLSFIEGNMDRFIYRDILQDVMLPYAEWEMPLRFIFQQD
FT                 NDPKHTSALVSEWFQNNNIHVLQWPAQSPDLNPIENLWEEVERRIRIQRFP
FT                 NKQSLIDKIKEVWSNLDENVIQKLISSMPRRCQKIILNNGYAINY*"
XX
SQ   Sequence 1630 BP; 583 A; 256 C; 304 G; 487 T; 0 other;
     cactatcgga caaaagtaag gcaacatttt gaaaaatata gaaattaatg tctatctaat        60
     gtaaataaat tatgatcggg caaactatgg tattattaaa agaatcaaag gaagctactg       120
     tcattaatgt caagtaatta tttattaagg ttgaaaaaaa ccgctttgtt gacttgtagt       180
     gtaaaaaagg attattttaa gacgacaaaa gtaaggcaac atttagattt ttttcaaaaa       240
     atgttgttat aatgaaaaat ttgttaggcc aatattaaca gttcgtcttg tgcaacaaga       300
     gccatgccaa cgggtacacc aattggtaaa gagttgaaag aaagagtgat agatgctttc       360
     ttaaacaatg aaaaacaagc ggatattgca agaagatttc aactgcctag atacagcgtg       420
     tctaaaataa ttattcgcta caacgaaaga ggacatttaa acaataatcc aaaatcggga       480
     agaccacgaa aaaccactat aaacatggac agacgcatta aaagaatttc ggaaaacgat       540
     ccatggaaat ctgcatctaa aattatagcg gaaataccgg aagtaggagt tagtacacga       600
     acaattcaaa gaagactggt tgcagcaaag ctttttagta gacgtcctgc taaaaaacct       660
     ttgatttccg aaagaaatag acgcgccaga cttcaatttg caagagaaca tttgaattgg       720
     acagtgcaag attggaggaa agttctgttt agtgacgaaa ctcgatacaa attatttaat       780
     tcggatggaa tgaaacgtgt gagacggcca atcaatacac gattcaaccc caagtatgtt       840
     acacccactg ttaaacatgg tcatggtagc gtttttctgt gggggtgttt ttcgtggaat       900
     ggtgtgggtc cgttgagctt tattgagggt aatatggatc ggttcatcta tagggacata       960
     ctccaagatg taatgctgcc gtatgcagaa tgggaaatgc ctcttcgttt tatctttcag      1020
     caagataacg accccaaaca cacttctgca ttggtcagtg agtggttcca aaataataat      1080
     attcatgttt tgcaatggcc tgcccaatca ccagacctca acccaattga gaacttatgg      1140
     gaagaggtag agcgacgaat ccggatacaa agatttccca acaagcaatc tttgatagat      1200
     aaaatcaagg aagtgtggtc aaatctggat gaaaatgtta ttcaaaaatt aatttcttca      1260
     atgcccagac ggtgccaaaa aattatactt aataacggct atgccataaa ttattgaatt      1320
     tttcgttcta tttatttaaa ctttagtgtt gggtagtgtt atgtaaatgt tgaatcaaat      1380
     aaaatttgag ttgaaaatat tttctgacaa tgttgcctta cttttgtcgc attaatatcg      1440
     ggctttttta tatttcaagc tagtagtatg tcataataat tacccacagg ctatccattt      1500
     tcaacacgaa taagaatatc tttaaacatt tattataaaa ttaaattgaa ggtaaatacc      1560
     aactcttaaa atttaaaata ccaatatttg tatatttttc aacatgttgc cttacttttg      1620
     tccgatagtg                                                             1630
//
ID   TC1-2_DM    repbase;    DNA;    INV; 1644 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.10, Created)
DT   11-NOV-2002 (Rel. 7.10, Last updated, Version 1)
XX
DE   TC1-2_DM is a DNA transposon, a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Mariner/Tc1-superfamily; TC1-2_DM; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1644
RA   Kapitonov V.V. and Jurka J.;
RT   "TC1-2_DM, a family of Mariner/Tc1 DNA transposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 30-30 (2002).
XX
DR   [1] (Consensus)
XX
CC   TC1-2_DM belongs to the Mariner/Tc1 superfamily of DNA
CC   transposons.
CC   It has generated duplications of TA target sites
CC   upon its integration into the genome. TC1-2_DM has 26-bp
CC   imperfect terminal inverted repeats and it encodes a 340-aa
CC   transposase (TC1-2_DMp, positions 356-1375).
CC   The sequenced portion of the drosophila genome contains 15 copies
CC   of
CC   TC1-2_DM. they are ~95% identical to the consensus sequence.
CC   Presumably, TC1-2_DM lost its activity just a few million years
CC   ago.
XX
FH   Key           Location/Qualifiers
FT   CDS           356..1375
FT                 /product="TC1-2_DMp"
FT                 /translation="MGKTKELSEFIKNEIIIKYNSGISVQNIIDLYKIPRA
FT                 TVYYQINKYKKTHTTKNVARSGRPRKTTQKDDGYILRKFKQNVLQTPRSVA
FT                 KELKEGAEIDISERTVRRRLKEADFGTYVSRVIPLITPRNKLKRLDFAKKY
FT                 VGQPASFWNNVLWSDESSFEFHCSKKIFFVRLPKQYRKKVAPVCQRINHSG
FT                 GSVMFWGCVAFTGLGDLVPVDGTMNQRKYLDVLNNHAFPSGDKLIGESFIL
FT                 QQDNAPCHKAKLITQFLKDVCVNTLDWPPQSPDLNIIENLWSYLKRKRSAN
FT                 LSRSREETILEIQTLWKDISIDYIHSLVQSVPKRLQKVIDAKGGYIFY"
XX
SQ   Sequence 1644 BP; 570 A; 270 C; 291 G; 513 T; 0 other;
     cactagtggg cataagtatt tagacaccat tagcttgcaa ctgccgggct atgcttttca        60
     tagtacagtc aaataaataa gtaaactatt gatgataaaa caaagagtgc aattacagtt       120
     acacgcgaga ggtatgtttt gccgtttacc ttttcaatta tccttctgct gataagaaag       180
     ctagacagac aacgatttgg gcggtggcaa aagtatttag acatcacatt taattagttc       240
     gcattgatct gttgttcgaa gaatatcaaa tttttgactt ttttagatca tttgaacatt       300
     tgttcttgat aacgtgttac tacctacttt tatttcattc ataaatttgt taaacatggg       360
     gaaaacaaag gaactgagcg aatttataaa aaatgaaata ataattaagt ataattctgg       420
     tatttcggta caaaatatca ttgatttata caaaattcca cgggcaacgg tgtattacca       480
     aataaataaa tataaaaaaa cacacacaac caaaaacgtt gcgcgtagtg gccgaccacg       540
     taaaacaact caaaaggacg atggttatat tttacggaag tttaagcaga atgttctaca       600
     aactccccga tcggttgcca aagaactaaa agaaggagca gaaatcgata tcagtgaaag       660
     aacggttcgc agacgtctta aggaagccga ttttggaaca tatgttagca gagttatacc       720
     actaataact ccacgaaata agttaaagcg cctcgacttt gccaaaaaat atgttggtca       780
     gcctgcatca ttctggaaca atgttttgtg gagcgatgaa agctcttttg agtttcactg       840
     ctcaaaaaaa attttttttg ttagattacc gaaacaatat cggaaaaaag tggcaccagt       900
     atgtcagaga ataaatcatt caggagggtc tgttatgttt tggggatgcg tagccttcac       960
     tggcttggga gatttggttc ctgttgatgg aaccatgaat caaagaaaat atttagatgt      1020
     ccttaataat catgcattcc cctctggtga taaattgatt ggagagtcct tcatactcca      1080
     gcaggataat gctccctgtc ataaggccaa actgattacg cagtttctga aagatgtttg      1140
     cgtaaacaca ttggattggc cacctcaaag tccagacctc aacataatag aaaacctctg      1200
     gtcatattta aaaagaaaaa ggagtgcaaa cttatctaga agtcgcgaag aaacgatttt      1260
     ggaaattcaa accttatgga aggatatttc aatagattat atccacagct tggtacagtc      1320
     tgtaccaaaa cgtctgcaaa aggtgataga cgctaaggga gggtatattt tttattaatt      1380
     tgtcataatt ttttagttga cttttttttt tcaatttata acatttaaat aatttgtcca      1440
     aatacttatg ccactgctaa tttgtaaaaa agtaattttt gttaaatcaa caatgaagtt      1500
     atccatatgt ttatgttacc taatttaact acgatagtct acctatttac taaaattatt      1560
     aaacaatttt gctttaagta aacaatgagt tacaaacaaa tatattgaat atatttcttg      1620
     tccaaatact tatgcccact agtg                                             1644
//
ID   TC1N-1_AG   repbase;    DNA;    INV; 521 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   TC1N-1_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   TC1N-1_AG; mariner/Tc1 superfamily; nonautonomous DNA transposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-521
RA   Kapitonov V.V. and Jurka J.;
RT   "TC1N-1_AG, a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2(11), 25-24 (2002).
XX
DR   [1] (Consensus)
XX
CC   There are several hundred copies of TC1N-1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   TC1N-1_AG copies are flanked by the TA target site duplications.
CC   This element has 182-bp terminal inverted repeats.
CC   Classification: a nonautonomous Tc1-like DNA transposon.
XX
SQ   Sequence 521 BP; 150 A; 103 C; 117 G; 151 T; 0 other;
     cagggtttcg aatcatataa gggaatagtt caaccactta ggggaatgtt gcaaatcggt        60
     aggggaatgt tgcatgcaag ctgtggatgt ttgcaatcac ttaggggagt tttgcaatcg       120
     attaggggaa tgttgcaagc gtactgtgga gctgtcatca gactgtgggt gccggtgtaa       180
     aaagctacga attgataccg atgatgtttt tttaaaaaca tcgtttggag ttgttttcgt       240
     gtgggattct gctgtacaca tgataaacta aataaatcct gctgcggagc cataattaaa       300
     catgataagt tagtaagatt gacgaaaata ttttaaggta tttacagcgg cacccacagt       360
     ctgatgacag ctccacagta cgcttgcaac attcccctaa tcgattgcaa aactccccta       420
     agtgattgca aacatccaca gcttgcttgc aacattcccc taccgatttg caacattccc       480
     ctaagtggtt gaactattcc cttatatgat tcgaaaccct g                           521
//
ID   TC1N-2_AG   repbase;    DNA;    INV; 766 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   TC1N-2_AG is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   HATN6_AG; TC1N-2_AG; mariner/Tc1 superfamily;
KW   nonautonomous DNA transposon.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-766
RA   Kapitonov V.V. and Jurka J.;
RT   "TC1N-2_AG, a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(5), 98-98 (2003).
XX
DR   [1] (Consensus)
XX
CC   There are ~100 copies of TC1N-2_AG in the genome.
CC   They are ~93% identical to the consensus sequence.
CC   TC1N-2_AG copies are flanked by the TA target site duplications.
CC   This element has 337-bp terminal inverted repeats.
CC   Classification: a nonautonomous Tc1-like DNA transposon.
CC   One subfamily of TC1N-2_AG is composed of ~10 copies that
CC   harbor an insertion of HATN6_AG element at the same position.
CC   Presumably, the last element was multiplied as a portion of
CC   a new composite TC1N-2_AG-like element.
XX
SQ   Sequence 766 BP; 215 A; 166 C; 165 G; 211 T; 9 other;
     cacctgtttc catctacgtt cgaatctcgt gccgtttgca tcgaatcgca aaccgcctgc        60
     ttcgaatcgc atgccactac gatcgaatgc gtgcacccat ggttgaatcg cgtgccagta       120
     cggttgaatc gcgttccact atggtcgaat catatgccac tacgatcgaa tcgtgtgccg       180
     ctaccattgg atttctgaaa gcaagagcat agtaaactgt ttgtttacgt ttgaaagctg       240
     tttcyttctt cgccgacggc atttcatttg taaaatagta ctaataaaag ggatttattc       300
     tctgattata ggtaaacccc ttgttatcga cgaatattgt gnaaccntgt tgatnntaan       360
     atctttacga tcaacaaaca ccgaatrtta gttgaagatt ttaccatcaa caagggacca       420
     wggkttcaac cgatattcgt cgataacaag gattttacgt gtaatcagtg aataactgcc       480
     ttttattagt attttacaaa cgaaatgccg tcggcgaaga aagaaacagc tttcaaacgt       540
     aaacaaacag tttactatgc tcttgctttc agaaatccaa tggtagcggc acacgattcg       600
     atcgtagtgg catatgattc gaccatagtg gaacgcgatt caaccgtact ggcacgcgat       660
     tcaaccatgg gtgcacgcat tcgatcgtag tggcatgcga ttcgaagcag gcggtttgcg       720
     attcgatgca aacggcacga gattcgaacg tagatggaaa caggtg                      766
//
ID   TC1_DM      repbase;    DNA;    INV; 1666 BP.
XX
AC   .
XX
DT   14-JUN-2000 (Rel. 5.05, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   TC1_DM is a DNA transposon, a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; transposase;
KW   Mariner/Tc1-superfamily; TC1_DM.
XX
NM   TC1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1666
RA   Kapitonov V.V. and Jurka J.;
RT   "TC1_DM.";
RL   Direct Submission to Repbase Update (31-MAY-2000).
XX
DR   [1] (Consensus)
XX
CC   TC1_DM belongs to the Tc1 superfamily of DNA transposons.
CC   It has generated duplications of TA target sites
CC   upon its integration into the genome. TC1_DM has 26-bp
CC   imperfect terminal inverted repeats and it encodes 331-aa
CC   transposase 39% identical to the C.elegans TC1 transposase.
CC   There are ~100 copies of TC1_DM which are ~95% identical to the
CC   consensus sequence. Putatively, TC1_DM lost its activity several
CC   million years ago.
XX
FH   Key           Location/Qualifiers
FT   CDS           359..1351
FT                 /product="TC1_DM_1p"
FT                 /translation="MGRGKHCTVEKRNLIKNMISEGKTYAEIGRIVGCSNK
FT                 MIRKALLFVEKNETRRRKPSMSNVEIKRLVRQGKKEPFKPATELKKELQIA
FT                 ESVETVRKRLRQNNLNACSPRKVPLLTVKHVAKRIEYAKIHKDWPVEKWRN
FT                 ILWSDESKIVLFGGKGSRSYVRRPPRTEYNPRFTFKAVKHGGSNIMVWACF
FT                 SYYGVGPIHWIQGIMDQHIYTDILENVMLPYAEDEMPLVWTFQQDNDPKHT
FT                 SKKARKWFEQKSIRVMKWPAQSPDLNPIENLWADVKKKVSEAKPNNNEDLW
FT                 GVVKDSWSKIPQKRCQDLVDSMPRRCAAVIANKGHATKY"
XX
SQ   Sequence 1666 BP; 535 A; 288 C; 369 G; 474 T; 0 other;
     tacagctgcg gttaaaataa tagcactact gcaggtggaa agttgatttc ctaaaaaaaa        60
     attattaaat gtttatattt tttaaagtca gattgcatga ataataagta ccatatgttg       120
     gctctctgag caagaaattt ttactctctc aatgtaacgg ttctttttgt ttttgggcac       180
     ttgctgcaaa agtgcgcgaa atgaggcggt aacaaaaata gcactgacca cgtatttgct       240
     gaataaaatt aataggagtg attgctttgg gttttttttc gacaaatttt gaaaaaagga       300
     gttgtattaa aggttttaat tgaatttttt ccaaacgaag accaaaaatt ctctagttat       360
     gggtcgcgga aagcattgta ccgtcgaaaa aagaaatttg attaaaaaca tgatctctga       420
     aggtaaaacc tacgctgaaa ttggtcgcat tgtcggttgt tcaaacaaaa tgatccgcaa       480
     agcactgctg tttgtcgaaa agaacgaaac acggcgaaga aagccctcaa tgtccaacgt       540
     ggagatcaag cgcttggttc ggcaaggcaa gaaggagcct tttaagccgg cgacggaact       600
     gaagaaggag cttcagatag ctgaaagcgt ggaaactgtt cgcaaacgct taagacaaaa       660
     caaccttaat gcgtgcagcc caagaaaagt cccgcttttg actgttaagc atgtggcaaa       720
     gcgaatcgaa tatgccaaga tacacaagga ctggcctgtg gagaagtggc gcaacatttt       780
     gtggtcagat gagagcaaaa ttgtgttgtt tggtgggaaa ggctctcggt cttatgttcg       840
     gcgtccacca cgaactgaat ataatcctcg cttcaccttt aaggcggtaa agcacggggg       900
     atcaaacatc atggtatggg cgtgcttttc atactatgga gtaggtccga tccattggat       960
     tcaaggcatc atggatcagc acatttacac agatatcctg gaaaatgtga tgctgccata      1020
     tgccgaggat gaaatgccgt tggtttggac atttcaacag gataacgacc caaaacacac      1080
     gagcaagaaa gctcgaaagt ggtttgagca gaaatcgatc cgagtaatga aatggcctgc      1140
     tcagtcaccc gacttgaatc caatcgaaaa cctttgggcg gacgtgaaaa aaaaggtttc      1200
     tgaagccaaa cccaataata acgaggatct ttggggtgtg gtcaaggatt catggagcaa      1260
     aattcctcaa aaacggtgcc aggacttggt ggactccatg ccaagacgat gcgcagctgt      1320
     cattgccaac aaaggtcacg caaccaaata ttaagattct ttaaacatag ttcttaagat      1380
     ataatccatt tgttgaatta tttttttatt tttttggtta gttttagcaa actacgagaa      1440
     acagtgctat ttttgttacc gcctaaattt gaaggttttt ttttttgttt taccaattat      1500
     ttttaaaata tccattagat ctgttactaa tttttttatt tcgattgaaa atcattgtag      1560
     tatttaagtt tagtgagtaa aatgatgaaa aagtgtcaga aaatagagaa acgctgggac      1620
     aaacacgaaa tgtgcttatg gtgctattat tgttaccgca actgta                     1666
//
ID   Tc1_Ele12   repbase;    DNA;    INV; 1717 BP.
XX
AC   .
XX
DT   13-OCT-2010 (Rel. 15.10, Created)
DT   13-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous Mariner/Tc1 DNA transposon family from Aedes
DE   aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   Tc1_Ele12.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1717
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1717
RA   Kojima K.K. and Jurka J.;
RT   "Mariner/Tc1-type DNA transposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (13-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update. ~96% identical to consensus. TA TSDs. This
CC   consensus is ~97% identical to the original sequence in [1].
XX
SQ   Sequence 1717 BP; 617 A; 286 C; 318 G; 496 T; 0 other;
     tacagtgagt cacagtgaaa atcgtccacc ttgaacatta ccagaaaagt aattcgtact        60
     attcatgtat agaacaagaa ttcaaattaa atggctcgtt acgttagttc ggcaagggtc       120
     ttgataattg tatgcaattc aagtcattga atattaaaag aataaattaa gctttaaatt       180
     tgtaaaaata atcaataata aggtcacagt gaaaatcgtc caccttgccg ttatgcatga       240
     tttttggggt aatattataa agttttcatt catatcattt ctttaactcg cgcacacaca       300
     tacattcaag cacgatctgc tatgcaagaa taaaaaaggt ttagtttttt agagtatttc       360
     cattaaaatg ggacgaaata aacagacatc gtcagatata agaaaacttg tgataaaact       420
     acacaaaaat ggcaaaaatc aactgaaaat caccaaattt gttggaaaag ggtgtactac       480
     cgtatagagt ataataaatc gctacaaaat taaccattga agtaaaatca aacccaaaac       540
     atcgttgaag aaaattatca atggagcggt tgagcgttag cttcttcgcc aggttgatgc       600
     tgaccccaag ataagtgcac cgaaactcgc aattgaagcg aaaaagtatc tcaggaagca       660
     ggtatctcag aaaaagtatc tcataaagcc agaaactatg cgtagagtgc ttcgaaaaca       720
     taacgtttca tggccgagtt gcaagtcgga agacgtttgt atcaccgaag tacgtgaaat       780
     gtcgtatgga gtttacagaa acacacgttg gaaaggattt caacttctgg aagcacttac       840
     tattcacaga tgagagcaag tttaatattt tcggatctga cggcagggtt atagtttgcc       900
     ggaaaccgaa tgaagacctg aaaatgaaaa atctttgtga aactgctaag catggtagta       960
     gttccgtgat agtttgaggc ttcatgccag catctgatgt tagtaactgg cactttatcg      1020
     acgggatcat ggctcaatac gtctatcttg attcattgaa gaagaatcga aagcctagcg      1080
     taaaaaatgg cttttaattt acctatctac cttatctcaa aaaaatgggc attacatcta      1140
     ccaggataaa catctgcaac atacagcggc aaaaccgaaa gcttggttaa aaaatgccca      1200
     tcaatcatca atctgccgag acaatctaca aatctcgaca ttatcgagaa cttgtggcat      1260
     ctgttggatg tttaaatcag gaaacatcaa ataacgagca gatatacttt gaaaagtgcg      1320
     cttactattg agtggattaa gatcgctaaa acttaaactg agaaacttgt gcgatctatg      1380
     ccaaatcgtc tcaggaaagt tttaaagagc aaaggcttac ctactcgata ctagtttatg      1440
     ggttgacacc tgaaaaaatg acaattcttt tagatcaact ataaattgat atcggtggac      1500
     gattttcact gtgacttata tttgaggttt aaatttactt tattattttt cgattccatt      1560
     ttgtttttaa tatttataaa aacagtgcca caatgaagta atggaaatat gcaaataatt      1620
     gtatgaatta gaaaaccaca gcttttttat atataataat aacagaactt tgaaaggaaa      1680
     atatgagggt ggacgatttt cactgtgact cactgta                               1717
//
ID   Tc1_Ele13   repbase;    DNA;    INV; 1725 BP.
XX
AC   .
XX
DT   12-OCT-2010 (Rel. 15.10, Created)
DT   12-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Mariner/Tc1 DNA transposon family from Aedes aegypti.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Tc1_Ele13.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1725
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1725
RA   Kojima K.K. and Jurka J.;
RT   "Mariner/Tc1-type DNA transposons from the yellow fever
RT   mosquito.";
RL   Direct Submission to Repbase Update (12-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [2] Consensus update and extension. ~95% identical to consensus.
CC   This consensus is ~97% identical to the original sequence in [1].
CC   TA TSDs. 405-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(393..983,968..1480)
FT                 /product="Tc1_Ele13_1p"
FT                 /note="transposase."
FT                 /translation="MPKKAQISISIRNLIIEHHKTGKSYRDIAGIVQLHKD
FT                 TVARIVQMYKKRGSILPAKRSGRPSKTTGRIDRAIVKKAELDRGLSAPKIA
FT                 KQIESEFSIQLTSQSVRNRLHKKGLKGRVALKKPWLSAKNIKKRLNWAKDH
FT                 ISWTSDDWNKVIWSDETKVMLFGSDGITRKWRRTGESLKKECLRPTVKHGG
FT                 GELLYQHVTLPTLIFQPTEHDFDFFSAGRVMVWGSMATSGVGELEFIDGIM
FT                 TKEVYLDILKRKLPASAQKLKLRHRYTFQQDGDPKHTSKLVSQWFKEKRIK
FT                 VMEWPAQSPDLNPIEHLWSILKIKVQEQKPTSIQQLRQVISSEWDKITPET
FT                 TAKLVESMPRRCRAVIEAKGGHTKY"
XX
SQ   Sequence 1725 BP; 543 A; 312 C; 369 G; 501 T; 0 other;
     tacagtatgc aaaaaaagtt tatccacccc ctccccccta ccaatttaga attcttttgt        60
     ttttctggtg aaaatcatgt caatttaatg agtgtttctc catggtttat caatttatgt       120
     ttatttatca cattgccatt aaaaaaatga cgtttatata tttttttgag attttatgtg       180
     atgaattatg aaaaagggta aaaaataacg caaaaaaagt ttatccaccc ccaatcggat       240
     actaagattt aagtgtgtat tacagagttt tagtgtgtat tctgcaactt tctcgaatgt       300
     aaacattgtg tctagcatcc attttgtgct cttgaagttt tcgtgctcaa aatttcagtt       360
     tcgtgttaaa attggaggtt ttttgttgca aaatgcccaa aaaagcacaa atttcgatca       420
     gcatccgaaa tttgattatt gaacatcaca aaactggcaa aagctaccgt gatattgccg       480
     gaattgtgca gctccacaaa gatacggtcg ctaggattgt gcagatgtac aaaaagcgtg       540
     gttctatctt accagctaag cgatcgggac gtccttcaaa gacaactggc cgaattgaca       600
     gagctatcgt gaagaaggcg gagctggacc ggggactatc agctccgaaa attgcgaaac       660
     aaattgaaag cgagttttcc attcagctga catcacaatc cgtacgaaat cgtcttcata       720
     agaaaggtct taagggcaga gtagcactta agaagccatg gttgtccgca aaaaatatca       780
     aaaaaagatt gaattgggcc aaggaccaca tttcatggac cagtgatgac tggaataagg       840
     tgatttggtc agatgagacg aaagtaatgc tatttggatc tgatggtatc acaagaaaat       900
     ggcggcgaac cggtgaaagt ttgaaaaagg agtgtttgcg gcctacagtc aagcatggcg       960
     gtggtgagtt actttaccaa cattgatttt tcaaccaact gagcatgact ttgatttttt      1020
     ttctgcaggt agagtcatgg tgtggggatc tatggctaca tccggcgttg gagaacttga      1080
     gtttatcgat ggaattatga ccaaggaggt ttacttggac attttgaagc gaaaactacc      1140
     agcgtctgcc caaaagctta agttaaggca cagatatacg ttccaacaag acggagatcc      1200
     gaaacatacc tcaaagctgg tttcgcagtg gttcaaggaa aagcgtatta aggttatgga      1260
     gtggccagca cagtctcctg accttaatcc gatagaacat ctctggtcaa tcttgaaaat      1320
     taaggtccag gagcaaaaac caacaagcat ccagcaattg cggcaggtaa tctcaagtga      1380
     atgggacaaa atcaccccgg aaacaactgc taagcttgtt gagtcaatgc cccggcgatg      1440
     ccgagcagtt attgaagcca aaggtggtca cacaaagtac taaaactatg tgtgtcagag      1500
     gggtggataa actttttttg cgtcattttt taacttattt ttaacatcag ctctcaaatg      1560
     caagagaatt tgttttttta catcgaactc gcacgaattg aacttgtttt tacctaaata      1620
     ataagaaact gaacaacaaa tagccgtgtt ctaatttttt agtgggattt ttggaagaaa      1680
     tctaattttc cactgggggt ggataaactt tttttgcata ctgta                      1725
//
ID   TE-1B_PPo   repbase;    DNA;    INV; 322 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative transposon from Papilio polytes: consensus.
XX
KW   Transposable Element; Nonautonomous; TE-1_PPo; TE-1B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-322
RA   Kojima K.K. and Jurka J.;
RT   "Transposable elements from the common Mormon genome.";
RL   Repbase Reports 15(9), 3207-3207 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~82% identical to TE-1_PPo.
XX
SQ   Sequence 322 BP; 134 A; 51 C; 41 G; 96 T; 0 other;
     tgaaaaatga aaatgaaaat atttattatt aacagtaaag attacacaaa gacaaataac        60
     ttttgacaat aacttaaaat tatacatgac agaaaattaa acatagttgt tatcttaagt       120
     tactatatat tggttattcg agttcatctg ttgatggcca cactaggcaa tgcctgtatc       180
     gtggccaccg aaaattcata tatactatcc gtatccatac ataaaattac agaaacccac       240
     actcagggca gcgtctataa cgcgcattta attaaaagtt actcatatat aaatttaact       300
     ataactaaat gtaagagaaa aa                                                322
//
ID   TE-1_AAe    repbase;    DNA;    INV; 1263 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A putative non-autonomous transposon family from Aedes aegypti.
XX
KW   Transposable Element; Nonautonomous; TE-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1263
RA   Kojima K.K. and Jurka J.;
RT   "Putative transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1439-1439 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. Both termini are TATATGA. Many
CC   elements of this family contain an insertion ~94% identical to
CC   DNA-TA-8_AAe at the TA dinucleotide (686-687), and some copies
CC   do not have the insertion. This insertion is excluded from the
CC   consensus.
XX
SQ   Sequence 1263 BP; 401 A; 237 C; 223 G; 402 T; 0 other;
     tatatgatag cttacccgac gtggctagcc acgttccaac gaaatcttaa gggtgtgagc        60
     cgtttcaccg attcgtttaa cttttattta aaatttgaca gctcgatagt tatttcccct       120
     ccggttgaaa gtaaccctgc tctgaagcat gattaaactt gacagttcga aagttatttt       180
     ccgctcccga gaatttgaga ataactaacc ctctgtcaac tttgttcaga aataactact       240
     cgactgtcaa agctcaaatg ggttgaccgc gaagttcaat ttaaccattt gagggaaaat       300
     aactatcgaa atgtcaaatt ttaactaata gttaaacgaa ttggtgaaac ggttcacagc       360
     ctaaagcgaa aagctaccta taatctttca aatcgcatga tactgatgac ctcaaaatcg       420
     cctaaattta tgctcaggca atactccatc gagcacgtgg cctcaatact gctgtagtgt       480
     tctaatctga aataattata gccttatatg ctgttgtagt gtttcttgtg ttgtgaaata       540
     tttcaaaagt tccagaagat tctatgaatt ggagagtaga atcgtaccaa aaaatctagc       600
     atatcctccc aaatagctgc tgtagtgtag tatgattcat tgtcattttt caaaattaca       660
     gttgtgaaaa ctgtcgactc agagaaatac catgtcatgg aacaggaatg ttttaagcaa       720
     tcatcatagt aagcataaaa ttttgtatta agcttgcatc catgagtcga tatcgagtca       780
     ttgagcatcg actcttggag gtttcaatgt aaattaataa aactcgaata tttggcgcac       840
     attcatctca tttatgttta tcctgctttt gcatatgtcg aactcgtttt tgaacctgag       900
     atggaactgg agaaaccgtt tcacattttc aactcacacc cgattcaagt tcgactgaac       960
     tgcaatttgc ttgaagttga tttattgacg ttttgatcac caaccaaatt tcaaatcaga      1020
     cgacaatgat gaaatgttcg agaatattct acgaattgga atgaacaaag ttccagaaaa      1080
     ctccagaata ttctgccaaa gagctattgt agtactccac aatttgcaat tgtaatgttc      1140
     taatcttaaa atgtactgtt gtagtgctct taaattgctg ttgtagtgct caacgaaact      1200
     tttcgatgaa acatttcaaa gcgttactga cagacagaca actctgggat tttatatata      1260
     tga                                                                    1263
//
ID   TE-1_Anop   repbase;    DNA;    INV; 1544 BP.
XX
AC   .
XX
DT   02-MAY-2013 (Rel. 19.02, Created)
DT   02-MAY-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   Barbirostris clade 1.
XX
KW   Transposable Element; TE-1_Anop.
XX
OS   Anopheles
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae.
XX
RN   [1]
RP   1-1544
RA   Holt R.A.;
RT   "The genome sequence of the malaria mosquito Anopheles gambiae.";
RL   Science 298(5591), 129-149 (2002) 298(5591):129-149.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1544 BP; 297 A; 341 C; 471 G; 435 T; 0 other;
     agttcttttg gattgtcgga taagagaggt ctggttggga tctcgcgttg ccaggcgagc        60
     gcaagctcgt atggagggtc acatagaagc agtgcctttg tccgtatcgt tggtttcgcc       120
     ttcggtatat catgactggt tcttgaacca aatgggtcgc gcgctatccg tggataactg       180
     gaggtggcgt ggtctacttt gtagactttg atcatcctcc gcgacgggta gttcgaccgg       240
     cctggaccgc taagtgtgct atcagaaaag gtgtcatatg gtagattgct agttggggtt       300
     gggtgtgcaa cggactgctg ggcgctgccc tgtagcatgg aacttggctt gtcatgagct       360
     gttccgcaca atgctacggt gcgtggttcc cagtaggacg gggttacacc cggggtgtgt       420
     ctgctggccc gttgtgctgc ccgtagaaaa gattggccag tcatgagcta tttctggact       480
     acgacgtagt gcagcgggtg gtgggccatc caatttcgat gggtgtgcaa cggactgctg       540
     ggcgctgccc tgtagcatgg aacttggctt gtcatgagct gttccgcaca atgctacggt       600
     gcgtggttcc cagtaggacg gggttacacc cggggtgtgt ctgctggccc gttgtgctgc       660
     ccgtagaaaa gattggccag tcatgagcca tttctggact acgacgtagt gcagcgggtg       720
     gtgggccatc caatttcgat gggtgtgcaa cggcctgctg ggcgctgccc tgtagcatgg       780
     aacttggctt gtcatgagct gttccgcaca atgctacggt gcgtggttcc cagtaggacg       840
     gggttacacc cggggtgtgt ctgctggccc gttgtgctgc ccgtagaaaa gattggccag       900
     tcatgagcca tttctggact acgacgtagt gcagcgggtg gtgggccatc caatttcgat       960
     gggtgtgcaa cggcctgctg ggcgctgccc tgtagcatgg aacttggctt gtcatgagct      1020
     gttccgcaca atgctacggt gcgtggttcc cagtaggacg gggttacacc cagggtgtgt      1080
     ctgctggccc gttgtgctgc ccgtagaaaa gattggccag tcatgagcca tttcttgact      1140
     acgacgtggt gcagcgggtc gtgggccatc caatttcgtt tggtggtgac tttcaagttc      1200
     ggatcgcatt atgttgaaag gcgtgtgttg gtggatcact tatttattta ttttttattt      1260
     atttaagtgt gatactgacc agtgtgtgga gacataatag cagtgaagta aacgaaatgt      1320
     tcatcatcaa atttttttcg ggggtaaccc caactagtaa tctaccgaca cctttttctg      1380
     ttacacacgg cccaaaagcc tgctttctat gagagggtat cttttttttc gctcattcct      1440
     ttgacacagt cccccagaaa ttttcagggc attttttttg cctatgaact tgtatggggg      1500
     gtcatatggt atggtgaaaa gaaggatcaa tccaaaagtt aact                       1544
//
ID   TE-1_BM     repbase;    DNA;    INV; 1387 BP.
XX
AC   .
XX
DT   02-AUG-2013 (Rel. 20.10, Created)
DT   02-AUG-2013 (Rel. 20.10, Last updated, Version 3)
XX
DE   Putative transposon from the domestic silkworm; consensus.
XX
KW   Transposable Element; Nonautonomous; TE-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-1387
RA   Kojima K.K. and Jurka J.;
RT   "Putative transposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3500-3500 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
SQ   Sequence 1387 BP; 454 A; 211 C; 244 G; 478 T; 0 other;
     ttacaccact gaagtaggaa acctatggaa atgaaacgtc aacaaaaaat tcgtgccact        60
     gtgacgtcat ctggccacaa aacatggcgg ttttagtgct gcccagaaga ttttaatgtt       120
     agtaggtttt atcgataaac gttcttggct tattttattt taaatattgt tgagtatgaa       180
     tgtatttgta gaatttatac tttaatagga agtaagtata ttgttatgtg caaagatgat       240
     gtgatttaga tattatgtga aatctaagac gagttcgtgc ttcaaatttt ccaagtaaac       300
     gatatgacga tttttaaaat ttgctacact gattttataa agttgtcgtt tgccgcaaaa       360
     cataaagata tggcatagta cagtgccatc agcccatttc tagcatgctg aatgttatcg       420
     tattttgagt acgtgttttt cttagactat tacaatctat tttaattgtt ttgctgactc       480
     taaagtccgt aacacactac cgcagcgcac ctcaaggaag gtgcaccgca ccatttgaat       540
     cactctcact tgagagtgat tcaaatttta aacttatcaa gggaccgcct gataaaaaaa       600
     aacacctaca gaacatttat tcgttaatga aattacaaac gtcattcctt gtgacttcct       660
     ctctaaaatc acttaattaa taaatattta acgaatttac aatagtgttt tactcactgc       720
     ggaataaaac tattttattt aaatagttcc gaagagattt tgtcggtagc ctttttcccg       780
     aaatatctaa acagaatgtc taaatatgtt ttgatgacat attttaaaga ggtatttatg       840
     attagtgtca tgatgaatag attccgaccg aaaaatggtg tccgatattt cggattcaaa       900
     tatattaagt gtataatcta tgtttcggat gagggctcca taatgaattt aaatatatat       960
     agataatagt tttggggcat cgactttctt gagatcctat aaaatatgtt ttaattatta      1020
     tttttgtatg ttttaagcat gataaaatta gaaattttat ataagcaatc atattaaatc      1080
     gatatcaaag tcaataaata atgtacaacc caaaacagac ggccgaactg acgtgacaat      1140
     gacatttggc gcgctaaaca tggcggattt tcggcctcat tagacggaga cggagacatt      1200
     tacgtatatt catgtttcat tttatgtacg cactgaaata ctgttatatt gttttcctgc      1260
     gagttaaagt gctgagtaag aacgagatag atatatgttt atgtgtgtgc cttcaaaatg      1320
     ggtgctattt atataagcaa ttgtacgtat agaacaatat gtcgtgtccc tactatatag      1380
     gtctatg                                                                1387
//
ID   TE-1_LMi    repbase;    DNA;    INV; 519 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Transposon from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; TE-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-519
RA   Bao W. and Jurka J.;
RT   "Transposable elements from the migratory locust.";
RL   Repbase Reports 15(1), 353-353 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Flanked by ~9-12 bp TSD. Long
CC   hairpin structure at the 5'-end.
XX
SQ   Sequence 519 BP; 177 A; 85 C; 79 G; 178 T; 0 other;
     tcataaaatg cattttttta aaaccatcag ctgtttatta aaaaccttat acatctacca        60
     gtttcggtca tagaccatct tcatggataa aaaggtgtta aaacagaatg gtaaaatgca       120
     tcaaataaaa tacatccaac tgagataaac aggagtcagt ataactaaaa gtgtaaaaat       180
     tactgtggtc atcttagata aaacctatca gtcaaacatg acataaaagg tgagaacagt       240
     ctgttctcac cttttatgtc atgtttgact gataggtttt atctaagatg accacagtaa       300
     tttttacact tttagttata ctgactcctg tttatctcag ttggatgtat tttatttgat       360
     gcattttacc attctgtttt aacacctttt tatccatgaa gatggtctat gaccgaaact       420
     ggtagatgta taaggttttt aataaacagc tgatggtttt aaaaaatgca ttttatgaaa       480
     tatattacgg ctgttgacac tcgcctcacc aaagcattc                              519
//
ID   TE-1_PPo    repbase;    DNA;    INV; 315 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   Putative transposon from Papilio polytes: consensus.
XX
KW   Transposable Element; Nonautonomous; TE-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-315
RA   Kojima K.K. and Jurka J.;
RT   "Transposable elements from the common Mormon genome.";
RL   Repbase Reports 15(9), 3208-3208 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~8bp TSDs.
XX
SQ   Sequence 315 BP; 132 A; 48 C; 42 G; 93 T; 0 other;
     atgaaaaaaa atgaaaatga aaaaaatatt tattaaacca aaaagattgt acaaaacaaa        60
     taactttgac aataccttaa aattatacat aacaggaagt taaaaatagt cgttatctta       120
     agttattcta gctaagctta tctggtgatg gccacactag gcaatgcctg tatcgtggcc       180
     accggaattc acagatacaa tattatccga ccacaaaatt acataaaccc actctcacgg       240
     cagtgtttta gtatttaatt ataagttaat caagtttaaa ctttactgtt attaaaatgt       300
     aattgggaaa aaata                                                        315
//
ID   TE-2_BM     repbase;    DNA;    INV; 519 BP.
XX
AC   .
XX
DT   02-AUG-2013 (Rel. 20.10, Created)
DT   02-AUG-2013 (Rel. 20.10, Last updated, Version 3)
XX
DE   Putative transposon from the domestic silkworm; consensus.
XX
KW   Transposable Element; Nonautonomous; TE-2_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T.,
RA   Kanamori H., Namiki N., Kitagawa M., Yamashita H. et al.;
RT   "The genome sequence of silkworm, Bombyx mori.";
RL   DNA Res 11(1), 27-35 (2004).
XX
RN   [2]
RP   1-519
RA   Kojima K.K. and Jurka J.;
RT   "Putative transposons from Bombyx mori.";
RL   Repbase Reports 15(10), 3501-3501 (2015).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to the consensus. It often follows a Bm1
CC   insertion.
XX
SQ   Sequence 519 BP; 185 A; 118 C; 110 G; 106 T; 0 other;
     aaaaaaaaaa aaaaaaaaaa aaaaaaaagt gtgtgtgtcc gctccgacgc acgactggag        60
     tttactggat ataaaaaatt aaacgaaaca atacgagaaa tagttctata ttacgacaac       120
     acgatacact acagattatt aacaaattaa cgagacacaa aacaaacgac taacaaatat       180
     atgaaaatac aataatgaga gaaacgcgcg atcagtacga ggctttgtgg cggactgccg       240
     gcgcagcagc ccggcgtcac ctgcaataac gcggccgcgc gttggctcct gattggcgcg       300
     cgcacgcatc acgcaatcag gagccaatca ggcgcataac gcatttcgtg tgacatgcta       360
     gtacgatttt gattggcgcg cgcacgcatc acgcaatcag gagccaatca ggcgcataac       420
     gcatttcgtg tgacatgcta gtacgatttt ggtccccata attttcatac cccgggccta       480
     tatatgtaaa tcgattctaa aggagtaaac tccaaaaaa                              519
//
ID   TE-2_CQ     repbase;    DNA;    INV; 1334 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A transposon family from Culex quinquefasciatus - consensus.
XX
KW   Transposable Element; Nonautonomous; TE-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1334
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 96-96 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. ~18bp TSDs.
XX
SQ   Sequence 1334 BP; 442 A; 249 C; 273 G; 369 T; 1 other;
     aattcgcaat tcgcaatttt cagtgtaaga acgggccttg accgatctta tgcactaggt        60
     tcccgacgaa cacgcactgc ccttacacct acatctcacc cttgctctga gtcagtacga       120
     gcagcacgct agaacacgct ttgagtgttc gtgccaggca tgcacacctt cttttccggt       180
     tacgcatttt aactcggccg ggggtggtac attacgtagg gtttgatgta agtataagcg       240
     cctaaccatt tatagtgtgc ctatcaactt tcattaaagc aaaaactgtt ttatttttag       300
     tttgaattca aaaactaatt gttatttact gtgttttgtt ttctcctgaa atcttcccta       360
     gtgttgagtc gtgtttatat gttgctattt cttttgtcgc ggtgttttgt tacaattttt       420
     ggtcctaagc attttataaa agtttttcaa aagtacaata gtaatatttg tgttaattct       480
     ttgatcattc caaaaattga gtaagggctc gaacctcatt tgtttgaaga aaagggtgaa       540
     gattgaaaac aatggacagt gaaagaaata tactatktga agaatcaata gtgaaagaaa       600
     gatagtaatt tatgaagtag ataaagaaat taacaatagt taataaatag aggtaacaaa       660
     caagcttaga ttgtattgag ggcaatttac agggaagatg agaaattatt caaatagata       720
     aataaagaaa aggcacatga taaacaaaat tgacatcgct gccaaattaa gggaaagcag       780
     aaagtttgtt acagcagcat caattggtaa aatagagtgg aaaagcgttg agaaataaga       840
     gaatcaaatg agtaaaatcg aaatcaaatg gaggatagta aacagaagcc gcgttagaaa       900
     atcagtgaaa caaaataaac agaagatagg tggtagctgg aatgaaaaga agagaaaccc       960
     cgttgtgcga tgtctcaggt acatccacag cagttgactc aacatactgc gaatcaaaac      1020
     aataccgtct acaatcacaa attacttccc tttcccacat tgtcgcgccc ctttctttta      1080
     gccgtctcga ctctgaccca cggtggtcaa aggtttacga tccgtttcca caggccacca      1140
     gctaggtcat catgaaaacc aagccaacgt ggaggtaaga aaataggaca cttgcaagga      1200
     accagagcta tactgtcttg atcaagaatg atctaacagg actacggacg tagtcagtga      1260
     cgctccttcc aggatgttcc tcgcctgagc gtcaactgaa gaggtatcat cagcatcatt      1320
     cgcacttggc ctgc                                                        1334
//
ID   TE-2_LMi    repbase;    DNA;    INV; 366 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Transposon from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; TE-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-366
RA   Bao W. and Jurka J.;
RT   "Transposable elements from the migratory locust.";
RL   Repbase Reports 15(1), 354-354 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. Hairpin appears at both ends.
XX
SQ   Sequence 366 BP; 94 A; 92 C; 77 G; 103 T; 0 other;
     gaattcgaaa tatttaaaca tttcgaccgt ttcagggcat tgaaataaat ccaatggcaa        60
     agatgaaaat ttgtgctgga ccgggattcg aacccggatt tcccgctttg ggccagcggt       120
     cgccttaacc aattaggcta tccaggcacg cttcccttcc aacccaaatt ctcaccttgt       180
     agcacactac gattgtagtg ccccctgccc atttgattcc acttgctcgc agcctatact       240
     ggattcccgc aagggatcga gcgtattaat gcgtccgcat tgaaattgtc aattgcctgt       300
     tggggcagat atacaattat ttatatggtg tctgttcttt tcggacatgt ccgaaagaac       360
     agacac                                                                  366
//
ID   TE-4_LMi    repbase;    DNA;    INV; 323 BP.
XX
AC   .
XX
DT   08-JUL-2014 (Rel. 20.01, Created)
DT   08-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Transposon from the migratory locust.
XX
KW   Transposable Element; Nonautonomous; TE-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-323
RA   Bao W. and Jurka J.;
RT   "Transposable elements from the migratory locust.";
RL   Repbase Reports 15(1), 355-355 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~89% identical to consensus. Hairpin at 3'-end.
XX
SQ   Sequence 323 BP; 103 A; 58 C; 55 G; 107 T; 0 other;
     tcaggcttga ttccatggtg gaatttgtgc tccacgactg tatttgactt gtggaaattt        60
     tttcagcaat cagtcgtaaa aatatttatt tattggcaga tctagatttc gaccactgtg       120
     tggtcattat caatgcttaa aaacgattaa aatacttaaa acatctcgac ctccatgtac       180
     gaacgcaacc tccaacatgg aggtcgagat gttttaagta ttttaatcgt ttttaagcat       240
     tgataatgac cacacagtgg tcgaaatcta gatctgccaa taaataaata tttttacgac       300
     tgattgctga aaaaatttcc aca                                               323
//
ID   TE-X-1_NVi  repbase;    DNA;    INV; 4773 BP.
XX
AC   .
XX
DT   17-APR-2009 (Rel. 14.04, Created)
DT   17-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   nonautonomous transposable element from Nasonia vitripennis - a
DE   consensus.
XX
KW   Transposable Element; Nonautonomous; TE-X-1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-4773
RA   Bao W. and Jurka J.;
RT   "Transposable elements from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 802-802 (2009).
XX
DR   [1] (Consensus)
XX
CC   The element is not flanked by obvious TIRs, but it is flanked by
CC   TA satellite (shown in the consensus), which is probably
CC   introduced after the element's insertion. The TSD is unknown.
XX
SQ   Sequence 4773 BP; 1392 A; 1085 C; 1113 G; 1182 T; 1 other;
     atatatatat atataatata tatatatata tatatatagt tgttttgagc caaggtgaga        60
     ttcagccccc ctcgctccct cagccccccc tcaaaataac gttaaaacgt ttaaaaaacg       120
     cgttattttt tactcatgaa gcccccccct ccctcgccgc ccctttatta gccccctttc       180
     cccgcccccc ccctcccagc ccccctcagt tactttattc aacatttata gtaaaaaata       240
     ttattcatta tgttaaaagt tctatttttt ccacgccacc catgaggtaa atagaagagc       300
     gcgttttttt ctctgatgac aaaaatttta atgttttaga attagaaatt aatatagaat       360
     ctcatagtaa tttcaataag caatgatgta ttttattcgt gtatttttaa tactttattc       420
     tgtaacaagc ggtcgcgaat tcatattgcg cgcgctcgtt tagtcgcgcg atgttagctc       480
     ggcatgcaag cgcggtgttg ccaagtcgtg cgcggaggcg cgcgtgagac actgcgcgta       540
     aaggtagact atttcgggct tgcgaccagt aaacacacgt gcgcggagac caaactaaag       600
     tatcccggta aacgtatcgt gtcgacgagc atcatccgag caatcaactc ccatggctgg       660
     caccttcgat ctcagcttga cgtccagaag cagctaccca ggagcctttc gaggagtgga       720
     gcagcttggc taggagggac gcctcctcga ccggattctg tcgtttgacc ttggtcaccg       780
     gagatcgtgc tcgacgcgtg cttcgcatct ccgtatatct cacgaatttc ttcacgcgac       840
     tataaagacg ccgaagccga gattcgtgcc accgaatcct tggctcgtct accgaacacc       900
     gtcctctcgc gcgacgcgcg cgactattgt aaccaattaa agtgatcaat atatgcaact       960
     attctattca caagttgcgc tttttgctgt tacgaacccc gtccttccta tctcctgttc      1020
     gcggacttga cagggttgga ctgggatata gccgcggcat cgtcgtcgcc gttggcagcc      1080
     gagcaactct gtgcgcggag aaagcgcggc gagcttcact tgccgtgcat tttgtatacg      1140
     cgagtgactt agctgcattg cacggagtcg tcattgcacc gacggctaac gtccgtgggc      1200
     gactccagcg tcatcgaggg atagccgtgg cgtagtattt taacagatag agaaactgct      1260
     cggtgactct gcggcatctt cgtggccgcc gtgcacaagg ccagttgccc cgttacaaac      1320
     tggcgcctca acgttgcagg taacgagcaa gagcgtcgga gtaggtgggc attaaaataa      1380
     attcgtgtag cgagaaggaa gaattagctc gtctcgcgga agaacgaaat ttaaccctag      1440
     cgcaaatgac cgaagcagag aggatggcgg ctctgccatt cgtatttaca ggcatagccg      1500
     cagaataatg cgagaacaac aaagatgagt ggcaaagctg ggaagagttc tatacggcgg      1560
     cgacaagatg gtacggcacg aacaggcgat tccaacaacg gacgcagaga gaagatacca      1620
     aggcgcgcac gagcccgtgc gcgattttgt gacatgcctg ggaggcatga tgaaggaaat      1680
     aaagccacaa ccaagcctga aaaaacaact agacctctta cataaaaatc tgatgccaga      1740
     actgcaaagg ttgacccctc gtatgaactg ccacgactgg gacagtttcc aaagaagccg      1800
     aaaccgtact ggcgagcggg caagagtacc gcgcgccacc accactggag caaactctac      1860
     tagcatcgct tgcgtacgtc tcaccgacga aacgcaaaca gcctggcgcc gcagctgcaa      1920
     agtggtatag acaattaccg gaaaattacg caacgttggc cgagcctttg actcggctga      1980
     caaagaaaga tcagccgttc gtttggggcg atgaacagca atcagcattc gagacgataa      2040
     aagctcttat cgccttggct ccagtactgc actgcccgtg cttcgatcag cagtttgtca      2100
     tacaaaccga tgcaagtgat acagcgttgt gttgacgcag tgcatagacg gacaagactg      2160
     agtactcgaa ttcgccagca gagtactcac ccccacagag aggaattaca cggtcagcga      2220
     acgagaatgc ttggccgtgc ttttcgccat acgcaagttt caccagtaca tcgaaggtta      2280
     taaattcaaa gtcataacag atcacagcag cctaaggtgg ctatgcaatc tctgtcagct      2340
     gagcagagtt gaacagcgcg caccaccagg tttcatgggt aaacgtgtgg tgcaaaggcc      2400
     ttggcaatgg gtagccggag atatcatggg ccccttgccg aagtctgcta aaggccacga      2460
     gtacgcactt atcttccagg gtttgtttac ttgatggata gagtgcgtgc cactttgcaa      2520
     agccaacggc aaagcaatac ttgccgcact caaggagaga gtgattttga gattcggtgc      2580
     acccgaggtg tttcactcgg ataatggtac caaattcaaa aacaagacaa taaaagagta      2640
     cttggcagag caaggaatcc accactcgta ctcaccgcca tatcacccgc aggtgaatcc      2700
     agtggagcga ataaaccgca ctgtcaagaa gaatttttcg atgcccgccg actagtgcca      2760
     actttcaagg ttggcgacgt cgccaatagg agacacgtat tgttgtctgc ggcggaaggc      2820
     atcacggcaa aattggcttt tccgtacata gacccatata cgattacggc ccaagtcgac      2880
     tcgaatacat tcgagctgac cgataaaaaa ggaagagtgg aaaagctagt gtcggccaaa      2940
     gaaataaaga tcttttatga caaagacgac gaagaggggg acgacgatga gtctcgatca      3000
     ccgggggatg cttgagaggt gaaggcgatg agcgacccgc cagaagcgtg cgaactcgag      3060
     tctgagctca agccgacgga cgtagtggcg ggagggaagc gcgagcgcga gcaacggccc      3120
     ggtaaatatg ggtcgacatc cgcggtggcg gagagaagtg ggggacccgt aaacggagct      3180
     accccgaaac cctctcgccg cccgcgcggg cgacctcgga aaattgtaac ggcaagcgcg      3240
     ccgacggcga attagcagga tggaaagcgt aagcccggcc catctaaggg ctcgactaaa      3300
     gcaaatcggc cgaaacagct aaagccgacg gcgttatcat ctcgaaagac gtgagcaagg      3360
     tgccgcaccg ggcgattgac atcatcataa tatattacat tgacatcatc ataatatatt      3420
     acattgacat aatcataata tattacattg acatcatcat aatatatcac attgacacgg      3480
     gctcgccacg aggaagaatg cgcgcggata aaggagcagt agcgcgccga gtatctccgg      3540
     aagaagaggg agraagagcc gagatgctac atctgcggcc acccgggcgt gaagcggtcg      3600
     catcaatgct cggagcgagc cgcacgcaag aagatcttgg cagagatcct acgggaccgc      3660
     aagaagaact aggggaaaga agaagatgta gaagaaatga tcgctgaagg gaataaagag      3720
     tacctcgttt cccctatatc ctgtgtgttc ttaattgact acctgatatc ccatttcact      3780
     gcatccaagc atctcattct ttcgcatgat cgcgcgacgg cgcacagtgt accaaaatcc      3840
     gatttttatg gccaaaattc gctcgacaag ccaaatcgca atcattctta atgaaaaaaa      3900
     ttgcaaaata cttctacgat aatttccgtt catgtagaac tacttatatt tgataacgcg      3960
     ttacataccc tataagaaaa atagaaaaag ttacagcatt ggtttgataa tctataaggt      4020
     gtttaagacc ccttcaagtt tctaaaatgc cgattaagtg ttggtggttt ataaaataag      4080
     gatctaaaat ttatatttta tcagtttaga gttcagagat ccaaaatcag caagtatata      4140
     ttcttttttt tcttcttttt tttgttctta cagttttaga gattttagta catttcgatt      4200
     ataaaacatt tcgattatta cattattcag tcttatgtgt tttcctattt ttcttttagg      4260
     ttatgtactc ttttattaaa tataagcagt tctacacgaa cggaaatcat cgtacaagta      4320
     ttttgcaatt tttttattaa gaatgattgc aatttggctt gtcgagcgaa ttttggccac      4380
     aaaaattgga ttttggtaca ctgtgtggcg atacagagtt cttttgaaat ttttatgtac      4440
     tcatataatt ttgaataaaa gtgataaaag tattaaatat ttacgaatag aatacataat      4500
     tcaagcatat tcaaatttct atgagataat taatctaaat tttaaatttt aaatcaagtt      4560
     aaataaaaca taacattatt gtaaacagag aaaaaacgcg cctttttatt tacctcatgg      4620
     gtggtgtgga aaaaatagat gtataaataa tcattaccta tttttattta gataaatgtc      4680
     aaattaattg tattggggtg ggcgagcgga gcgagcaggg ggaacccccc ctagtatata      4740
     tatatatata tataatatat atatatatat ata                                   4773
//
ID   TE-X-2_NVi  repbase;    DNA;    INV; 714 BP.
XX
AC   .
XX
DT   21-APR-2009 (Rel. 14.04, Created)
DT   21-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   nonautonomous transposable element from Nasonia vitripennis - a
DE   consensus.
XX
KW   Transposable Element; Nonautonomous; AA targeting; TE-X-2_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-714
RA   Bao W. and Jurka J.;
RT   "Transposable elements from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 803-803 (2009).
XX
DR   [1] (Consensus)
XX
CC   The exaxt ends of the consensus is unclear, because this element
CC   lacks both obvious TSD and TIRs. However, this element seems
CC   targeting specifically AA and inserting between A and A.
XX
SQ   Sequence 714 BP; 239 A; 108 C; 136 G; 230 T; 1 other;
     atagtatatt gtgtaccaag ggcgtaaagt gggctttttt aggccgagtg tggattttgc        60
     agtacgagtc aaggcgagtt agcccgagcc gaaggcgagg gcgtttacga gccgcagacg       120
     agtactgcaa aatccacgag gccaaaaagc ccacttagcc cttggtgcac accatatttt       180
     atgtaacgcg cggacgtatt ttcgcgtttt ttcgtacgtg ttaagaggga ctgatgtgac       240
     tatttttgac acggcaaccg tgctcttgtc tgttcaaaca ttatataaaa gtcaattttt       300
     kttttttttt gtaaataaat aattgatttt aacagtaccg aatttataat gagaaaattg       360
     gaaaaaaatg aaataaagta ttatgtaaag ggttttaatg aaaaaaataa gaaatttcga       420
     caatgttaat ttatatttag ttataaatta tatattgttc aagaacataa cagtttgtac       480
     attttttatt taataataaa taatgcaaat ttatcaaaat caactttttt tttaaattac       540
     aaaaaaaaaa tttagcgggc aataaaggcc attattgccc gctgtttgaa tatgcgggca       600
     ataaaggttt ttattgcccg ctaaaataac ttttttgccc gccggtcaaa aaagagtcac       660
     tttagtccct attaataggt acgaaaaacg cgaaaatcgt tcgcgtgtta cata             714
//
ID   TE-X-3_NVi  repbase;    DNA;    INV; 1018 BP.
XX
AC   .
XX
DT   11-MAY-2009 (Rel. 14.06, Created)
DT   11-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   nonautonomous transposable element from Nasonia vitripennis.
XX
KW   Transposable Element; Nonautonomous; TE-X-3_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1018
RA   Bao W. and Jurka J.;
RT   "Transposable elements from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1163-1163 (2009).
XX
DR   [1] (Consensus)
XX
CC   This element lack obvious TIRs.The TSD is undefined, although it
CC   shows a polyT/A preference.
XX
SQ   Sequence 1018 BP; 312 A; 211 C; 177 G; 317 T; 1 other;
     tgaagtgata acttcttatg ggacggtgaa cctacaatgt ttgtaacttc tggaatgcgt        60
     tagatcgaat gcgttaaatg gaatgcgtta cagtgatatc tataggtata ctggtatagg       120
     gctcttagct ctcgacccgg caggccccct tctccgtgcg caaagctaaa tatagattta       180
     ctctcttagg accttataca ctctctccgg gcgcagggat aagtatacat atagctatac       240
     tgttttcgga ccccctccct ctccgagcaa tacctataga tttactctct tatgcatact       300
     ataccgcatt actttgctta cgctttcctt cactgtcttt ctcattctct ctgtactcct       360
     cgttggtata tcgccttcta cagacagtga cactgtgtat ttgttatcca gtgtcatacg       420
     aattgttaaa tgcataattg tgaaaataat tgagtgagct ctatcggtac ttcgaggagg       480
     gtagcttacc gatcggcaca gctgattcgg acacacgcca atttcggtta tcgatacaga       540
     aggattgcca tacgagatcg tgtttgtacg gaataaattt tatataatca caaccaatat       600
     taacgtagta gatgggcttg cgaacggtgc agttggaaaa ttagtttaca ttgaaactaa       660
     cgatcaaaat gaaattacac gtgtatggtt gcactttcaa gattcaccaa aaactggaca       720
     aaaaataaga ctaaaagctg ctgctcacat aactaaatat aatatccatc ctcaagcggt       780
     gccaatagac cgaagaactg caactgttta cttaaataat aataaaacca ttattgcaaa       840
     aagaaatcat ttcccgttag tatcagcatg ctactttgaa aaaaatatwc ttctttattt       900
     gtataatcct ttccaaaaat tatattcatt tgaataataa ataagttcaa ttttaaatac       960
     tttctactta aatcaagtta agttatcact tctgccgggc gtcccgagac gcacacat        1018
//
ID   TE-X-4_NVi  repbase;    DNA;    INV; 1080 BP.
XX
AC   .
XX
DT   13-MAY-2009 (Rel. 14.06, Created)
DT   13-MAY-2009 (Rel. 14.06, Last updated, Version 1)
XX
DE   nonautonomous transposable element from Nasonia vitripennis.
XX
KW   Transposable Element; Nonautonomous; TE-X-4_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-1080
RA   Bao W. and Jurka J.;
RT   "Transposable elements from Nasonia vitripennis.";
RL   Repbase Reports 9(6), 1164-1164 (2009).
XX
DR   [1] (Consensus)
XX
CC   The feature of this element is like that of TE-X-3_NVi.
XX
SQ   Sequence 1080 BP; 303 A; 290 C; 160 G; 327 T; 0 other;
     tgaagtgaat acttctatag gctcgctagg tacacatttt taccggggag tgaatcgaga        60
     aaaaaccgac cgtcacgcag ttaccgaacg gcaggagggg aagcaggggc aactctctct       120
     ctctctctca ctctcccctc caccgcgctc tcttcgccgc gcaaggcgta cgcactgcgc       180
     gcatctctcc cttcaccgcg ctctccttct ctctctctct ctctctctct ctctctctct       240
     ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct ctctcccctc       300
     caccgcgctc tccttaccgc atctttccgt tggctttcgg cgctctcggc gttctctaca       360
     cactatactt ctctactaca cgctatactc tggacaatgc tatcccgcgt ccccacgcgc       420
     tcggctttct ctacctagca taaactgaaa taatgctatc ccgcgtctaa gcgtcagttg       480
     tacgtaaaca gaaatagctg aaatatgttc tgctcactgc gttttagaag acggtcaaat       540
     atgtatcatg gctgcgattt acatttcacc caatcaaagc attacagaca taattcaatt       600
     tatccataga tcactacttg tatacactca agtaggatca cgggagcttg gtacaaatga       660
     ccatgaaatg ccactgattt tagcaggaga ttttaatgtt aactttgctg acgaaagtgc       720
     acaaccatta attacattcc tcaaagataa atttcaatta gacatgaata atgatgcgca       780
     acaatcaact actaagtatg gcacaacatt agatgcagta ttttcaagat ttttatataa       840
     aatcgattct aaaacattta tatcatactt tagttaccac aaaccaattg tttcttttat       900
     tgaattaaaa aatgaagata cctgtgattc taccatagat aaataaagtt tgtaagaaat       960
     aaaataatgt atgaataacg ataaacatat ttttattatt tcacctatat aaaaaaaacg      1020
     aagtctacaa cacacctaat tcagtattca cttctatcgg ctgtccccga gacagccaca      1080
//
ID   TECTH1      repbase;    DNA;    INV; 1649 BP.
XX
AC   X17627;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C. thummi DNA transposable element TECth1.
XX
KW   Transposable Element; Repetitive sequence; TECTH1.
XX
OS   Chironomus thummi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Chironomoidea; Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-1649
RA   Wobus U.;
RT   "TECTH1.";
RL   Direct Submission to Genbank (20-NOV-1989)Wobus U.,
RL   Zentralinstitut fuer Genetik und Kulturpflanzenforschung d.ADW,
RL   Gatersleben, DDR-4325, Germany..
XX
RN   [2]
RP   849-1649
RA   Wobus U., Baeumlein H., Bogachev S.S., Borisevich V.I., Panitz R.
RA   and Kolesnikov N.N.;
RT   "A new transposable element in Chironomus thummi.";
RL   Mol. Gen. Genet 222(2-3), 311-316 (1990).
XX
DR   GenBank; X17627; Positions     889    2537.
XX
SQ   Sequence 1649 BP; 599 A; 233 C; 160 G; 657 T; 0 other;
     caaggccata gaactccttg cactatgtct acaatcacta cttttttact caactttata        60
     aatttttact tatgtttcag tacacttact atacaatgta tcacaatcac tgcaattact       120
     aaactttact gcacttaact cttttttact actctttact ttacttaagt acattaacct       180
     atactttact acactttcct ttactttact ttactttagt atacttaagt acattttgct       240
     taactttact accctttact acactttatg cactttactc gtacttttct gtactttatt       300
     tttaatcaaa ttaattagtg cataatttca atctaaatag ttataggcct cttaaacatg       360
     tggtccatta atacgttgta atcatacttt caaaaaacaa aaaataaaat aaaagatttt       420
     gcaatcatta taaaaattta aaagaaaatg tttaaaaact taactaaagg ttatagaatt       480
     taaaatatta tttttttatt tttttattat tctatcattt taaaccatat ttagctgatg       540
     gaaaagaaag agcttacaaa aacataaagc actaatgcta ctaaggcaga aatagtttca       600
     ttcatgtcaa agaaatttct aattgatacc tttagtttgt aaggaaattt gtcaaaaata       660
     aaataaaagt atagtataga aaaatcgaaa aatttaaaaa aaaatctaaa atgttgtgct       720
     tttgttttta aaaatgagta attttaattg aaaaaatttt taaaaaatta tgaaaaattt       780
     taattcgaat tgactcgaat ttgatttttt cacgtaagct tatattaaaa aaactaatga       840
     ggacgatttg tgttaagttt aaatttttaa aaaaagctat aaatacaagc ttcatataaa       900
     ttagtttcaa tttatttgca tttcgaaatt gaatgaaggg actgtagaaa aacaatattt       960
     taaatttatt ttgtaataat atgttggctt tttatttcaa caagattaac tttccaaaaa      1020
     aaacttttta aaaatatata tcaaaagtgt tgataacatt taattttttc taaaaccaac      1080
     aatatcaaaa acattgattc tcactattct ttcgttacta ttcttcgtaa ttaggaaggc      1140
     atccttaatg ttgaaatatt tgaatttagt tcaatagttt tattttttac atgagaaaag      1200
     cttcatttat atttacattt taaatatatt ttatatataa aatttcaaat aataagcggt      1260
     tcttaagttg cgataatatt gactatttat aaataaattg aatggtaaaa taaacattac      1320
     ttcaaaatta attcaaaatc aactttaaac attttggttt ttaaagtttt aaacagtttt      1380
     atgttgctgc actttctata cttttactac acttgctata ctctcactat actgactata      1440
     cttttacaac actttactac acttaaacta cacttgctac acttttgcta cactttgcta      1500
     cattctacta tgctttggtt aactttgctt cactttacaa tatttaacta tactttgctc      1560
     atgttaactt aattttgcgc aatagtttgt atacgttact gcacaatgct cactcacggg      1620
     tatactattt tgggagttct atggccttg                                        1649
//
ID   TELREP_AG   repbase;    DNA;    INV; 337 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Anopheles gambiae middle repeat (telomeric regions) - consensus.
XX
KW   TELREP_AG; Telomeric region repeat; middle repetitive sequence.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Biessmann H., Kobeski F., Walter F.M., Kasravi A. and Roth W.C.;
RT   "DNA organization and length polymorphism at the 2L telomeric
RT   region of Anopheles gambiae.";
RL   Insect Mol. Biol 7(1), 83-93 (1998).
XX
RN   [2]
RP   1-337
RA   Gentles A. and Jurka J.;
RT   "Anopheles gambiae middle repeat (telomeric regions) -
RT   consensus.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 337 BP; 109 A; 63 C; 61 G; 104 T; 0 other;
     ttttttatca cccaaaatat tgaaaaagaa ccagaacaat taccaacttg cttttacata        60
     acgtttttca aaaccattaa ccttgattta tggcattttt ctgatattcg aaaatttccg       120
     cagctcaatg agttgcggat ttttcgccat acaaagcgga acgatcgaat ttttgtagca       180
     tagttcattt tgctcgtgag tgtcatggta taccagtttt caaaaagacc agtaaaatga       240
     acaccttggc ggcgaaatga gtgtcaaatg acaccaaaat gacagccgga tcgatcgaat       300
     tttttcgatc gaaaaattgt gctgaggccg agtatta                                337
//
ID   TELSAT_PG   repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Palorus genalis satellite repeat region - consensus sequence.
XX
KW   SAT; Satellite; Simple Repeat; TELSAT_PG; Pericentromeric repeat;
KW   satellite repeat.
XX
OS   Palorus genalis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Palorus.
XX
RN   [1]
RP   1-430
RA   Mestrovic N., Plohl M., Mravinac B. and Ugarkovic D.;
RT   "Evolution of satellite DNAs from the genus Palorus--experimental
RT   evidence for the "library" hypothesis.";
RL   Mol. Biol. Evol 15(8), 1062-1068 (1998).
XX
RN   [2]
RP   1-430
RA   Gentles A. and Jurka J.;
RT   "Palorus genalis satellite repeat region - consensus sequence.";
RL   Direct Submission to Repbase Update (JUL-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 430 BP; 167 A; 52 C; 59 G; 152 T; 0 other;
     aaaaaacgtt aaattcaaat gatttaagac gtttggctaa gaaattagaa taatattcac        60
     gttagtttaa taaaaacaaa taaaaaacat cgactttcgc atgattttag cattatttta       120
     gtcaatttat cactaaatcg ctctaaaaac gttaaattag catgatttaa gacgtttggc       180
     taagaaatta gaataatact cgcgttaatt tactaaaaaa agctaaataa cgtcgaattt       240
     tgcttgattt tagcacaaat ttagtcaatt taacgctaaa ttgctttaag aaaattaaat       300
     ttgcttgttt taagacgttt ggctaagaaa ttagaataat actggcgtta gtttaataaa       360
     agcagctaaa aaacattgac tattgcttga ttttagcatt attttggtca atttatcgat       420
     aaatcgcttt                                                              430
//
ID   Tetris_Dvir repbase;    DNA;    INV; 4561 BP.
XX
AC   .
XX
DT   29-SEP-2014 (Rel. 19.11, Created)
DT   19-FEB-2015 (Rel. 20.02, Last updated, Version 2)
XX
DE   Drosophila virilis transposon Tetris.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; Tetris_Dvir.
XX
NM   Tetris_Dvir.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-4561
RA   Dias G.B., Delprat A., Svartman M., Ruiz A. and Kuhn G.C.S.;
RT   "Tetris Is a Foldback Transposon that Provided the Building
RT   Blocks for an Emerging Satellite DNA of Drosophila virilis.";
RL   Genome Biol. Evol 6(6), 1302-1313 (2014).
XX
RN   [2]
RP   1-4561
RA   Bao W.;
RT   "Tandem repeat regions are masked out.";
RL   Direct Submission to Repbase Update (19-FEB-2015).
XX
DR   [2] (Consensus)
XX
CC   Tetris is a foldback-like DNA transposon present in D. virilis
CC   and D. americana that contains large TIRs with internal tandem
CC   repeats. The central region of the identified copies showed no
CC   coding capacity nor similarity with transposases from other
CC   elements, rendering Tetris either non-autonomous or defective.
CC   Tetris' target site duplications (TSDs) are 9-10bp. Based on the
CC   foldback-like structure and TSD size it has been suggested that
CC   Tetris could pertain to the Mutator superfamily.
XX
SQ   Sequence 4561 BP; 1382 A; 829 C; 853 G; 1497 T; 0 other;
     atgtgcgtca agttagcgac ggtgaattag cttcgaattt tggtacttgg tatcggaaaa        60
     ggaatcggtc actttaaaat gcatttattt atgtttttaa gcacgaaacc aaataaattt       120
     aaatgtagaa ttgaaaaaaa aataaattat ttactatctg cattcattta tttttgaatt       180
     ttgatttata atatgggtaa accaagggat taaaatatta ggttttcacc attccataaa       240
     tatctaaatt tagggacgat tgccccaaaa accgcatata cacgattaaa gcctatagtt       300
     tctcctagcc aactgtgaaa atttgattaa aatcgtcggt accattttca agatatttgg       360
     aaaagagtgc aacaaccccc aagtcagccc catataaaat gaccgcaaaa aatcaacctt       420
     gttttcgagc ccttatttct tagctcagag acaatggccc tcaatgcacg gtataccctc       480
     ttgtagatac atattttaag aagcttaagg cactaatttt aagtaaatag acggtacaga       540
     ttttgagaaa attaattaat tgtaagccaa cctcatatag ttcattcaaa aagtctatcg       600
     aactgctagt tcctacgtga actgaatgac tgcctggcat cagtgttgaa caattttgta       660
     cagaacttag cgggaaccaa ctcaatttga attggaaagg actcacagta aattaaatta       720
     ataagtcaaa gcaaattata tgagcagtat taagtcatac ttaatagcgt gttaatgcag       780
     aattatatcc atttataaat aaaataaatg tgtttttaaa taaatatgtg ggctagtctt       840
     tgaaaaaatg tatacatgat atacttgtac aagcttaaaa ttactattac gaacagtttc       900
     aactattaac attttgtaag acgaatatag aaagtgacgt aaaagtaatt ttcttaatac       960
     ttataaaaaa tacaatatat gttgcgttag ctttatgctc attttctccg cattccatta      1020
     caactcaaat ataagacaat ttctttgagt gttagcaatt acaattatat agtttaaagt      1080
     tttattttca gcaattacat cacaattaat gtgtatatat atatttatgt agttctttat      1140
     gtgactttta gcattatttt taattcgcct gtgtcatgta gctttaaaca tgttttattt      1200
     tcccaacttt tctagtacat atagttccga atatagtaat cttagtcagt ctcatcgtca      1260
     cgatgcagag tttataattt attaactcat gcatgaacat atatattttg ttatgtatat      1320
     atatttgttc tggttgtact gtattgtatt gtattgcaaa acacaaatac ttgcatgtac      1380
     atatcttttt tgttataaat atataaaaat atatgttata aatatatata tatgtacaca      1440
     tatacatcaa gagtcttgag caatggcgac tgccgttcca acttgatggg tccacggtcc      1500
     tccatgttgg gcgttgtccc gttgccgtct gtactcatcg tcgggctgtc cacaaatgac      1560
     atcctcggac gtgagcgaca ccaacagggt cagcgttgtg ggcgtgaccg agccgggtct      1620
     gaaaaagttc tccagcccat taccaatatc ccgccagcgg cgcattaatc agcggccggg      1680
     ttggggcgcg cttgacccga cccttgacca gatgctgcag atgaaacgaa gcgctggtca      1740
     gctgcgtaat cgaatcacag cactcgtcca cgttgacatc gtccatggcc gcattgctgt      1800
     tgctcatcat gtggctgaca gacgaggcct atgtaaatgt aatcgttggt tacgcccagc      1860
     gaatcgatgc acgcaataat gccggaggct atctcaagta caaacatctg aaccttcttc      1920
     gcatcgcgtt gatcccaaat ggtgcagctg attagggtaa agagatgggt ataagaaatc      1980
     aaattaaatc aacctagcag ataataatgg tattatctaa aatacgtatt cattaaattt      2040
     ataaaaataa tttcagcttg accaaaaata aattgaactg ggtaattaat ttgtatgtaa      2100
     tttaagtatg gttgtgcggc ttatgtccag ctctggtatc tcctcatcgc tgcatggctg      2160
     ttgcttatag cagccatcgg attgatccaa cacgaatgta cagctgcaat cttcactgtt      2220
     gctggccacg cccaaccaaa ccgtggctgc ttgtgtgcca accgatgcgg gactggatcc      2280
     gcatcgtcac attcatcgga ctctacacag ctgctcatgg attaatagga tccgccggca      2340
     ttggtctgct tgctgccgcc cacatttagg cgcaatcgca gatgtgtgtg gggggcggtg      2400
     agatggcagt ggttaggatg cgattatggt ttggtatacg ctctacttac cgtacaaact      2460
     tttgcgtcgc cgcaatcgct gctctctagg cgcattcggt ttctcgccaa aagcgcacaa      2520
     ggaaaagaga cgcaagttgt tcttgttgct gccgctcggc aacgtatttg ttgccacaat      2580
     ctgcgagtgt attaagctaa tcaataaact aagcacacaa ggcattagca gcgcattaag      2640
     cagatcggca ctcttctccg agtgctgctt atcatcgttg tattcgtttc ccgatcgtag      2700
     cccagcggcg ccaggcgatt gctgtgcatg atgtacattt atggcccaat taatcagatg      2760
     tgtgatgtac agaactacaa ataaaagaat tcgcaaacaa aaagaaaact tatttgatat      2820
     atgcatggaa tgcaaaagtg ccgctatgtt aggggctgtc aacttatgta gaaagctaac      2880
     ctatgggagc ataaagatgc caccttgtga aaataagtaa aagtatgacg atgaatatta      2940
     tgtaaacatg ttatttatat aaaataaata atttataatt tataacaact attgttaaaa      3000
     tattctacaa tttgtattat tatctgtgaa tatataaata tatatacaaa atatgaattt      3060
     ttattgtgag ccaattacaa acttttcatc gtcatgcata aaaagggtga ccgttttttt      3120
     taataattca cttattttca gagactgtca gtttccctcg tgtacatgct aggcttataa      3180
     tgggttggca gggtctatta taacggcact tttatatatc caagaatatt ccatacgact      3240
     tctactagct tttatatatg tttttcatga aaatttttat taataattca taatattaat      3300
     gttttttttt tttatttggg actagttcaa tatatataca tatttttatt gggagtcaaa      3360
     cataatataa gaaaaggttt gcgaggattg catccacggc tgctgcggct gcatccacgg      3420
     ctgcagcggc tgtagccacg gctgcagcgg ctgagacatc tgcggtggct cctgctggta      3480
     agccgtacgc gtctgtggca tctgcggcag ctgaggcggc tcctgctgtt gcatctgcga      3540
     cggctgttgc atctgcaacg gcttcgccaa ttctttttcc aaaaatctta ttttcttgtg      3600
     ttgcgccctt atcaaaagtt gttgctgttc aactttattt ttgagcgcag cacagtgcga      3660
     aggctggcgg tgcttaataa tttttattta tttttttttg tgggacatca cattggtaca      3720
     ttgttgaatt tgaataataa taattaaaat attgccacca tttcaaatat gttaattctt      3780
     cattaacacg ctattaagta tgacttaata cttctcatat aatttttttg actttttaat      3840
     ttaatttact gtgagtcctt tccatttttt catgattaca tataattcaa attgagttgg      3900
     ttcccgctca gttctgtaca aaattgttca acactgatga caggcaggga ttagttcacg      3960
     taggaactag cagttcgata gactttttga atgaactata tgaggttggc ttacaattac      4020
     aaaatctgta ccgtctattt acttaaaatt agtgccttaa gcttcttaaa atatgtatct      4080
     acaagagggt ataccgtgca ttgagggcca ttgtctctga gctaagaaat aagggctcga      4140
     aaacaaggtt gattttttgc ggtcatttta tatggggctg acttgggggt tgttgcactc      4200
     ttttccaaat atcttaaaaa tggtaccgac gattttaatc aaattttcac agttggctag      4260
     gagaaactat aggctttaat cgtgtatatg cggttttcgg ggcaatcgtc cctaaattta      4320
     gatgtttagg aatggtgaaa acctaatatt ttaacccctt ggtttaccca tattataaat      4380
     taaaattcaa aaataaatga atgtagatag taaataattt aattaatgca attctgcatt      4440
     taaatttatt tggttttgtg cttaaaaaca taaataaatg cattttaaag tgaccgattc      4500
     cttttccgat accaagtacc aaaattcgac gctaactcac cgtcgctaat ttgacgcaca      4560
     t                                                                      4561
//
ID   Tetris_TIR-220 repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   29-SEP-2014 (Rel. 20.02, Created)
DT   29-SEP-2014 (Rel. 20.02, Last updated, Version 1)
XX
DE   Tandem repeat present inside the TIR of the Tetris DNA transposon
DE   of Drosophila virilis.
XX
KW   Satellite; Simple Repeat; Tetris_TIR-220.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-221
RA   Dias G.B., Delprat A., Svartman M., Ruiz A. and Kuhn G.C.S.;
RT   "Tetris is a foldback transposon that provided the building
RT   blocks for an emerging satellite DNA of Drosophila virilis.";
RL   Genome Biol. Evol 6(6), 1302-1313 (2014).
XX
DR   [1] (Consensus)
XX
CC   Tetris is a DNA transposon present in the D. virilis species
CC   subgroup. Tetris' TIRs contain ~220-bp internal tandem repeats
CC   (TIR-220) that have expanded into large arrays of satellite
CC   DNA-like repeats. This is a consensus of about 480 copies of
CC   TIR-220 present in the D. virilis assembled genome. The repeats
CC   share a mean sequence similarity of 94%.
XX
SQ   Sequence 221 BP; 73 A; 39 C; 27 G; 82 T; 0 other;
     atcatactgt taaatggcag ccatatttta aactttatta tttaatttct ccgaaaacgg        60
     ccccaaatgc acggtagttg tgcatataga gcacgattta tcaatcattt tgctatttat       120
     ttcattaaaa tcatcggtac agattttgag aaattctcat ttttctattt ctctcataac       180
     atcctatgtt aatgcaaaaa aacaagctgg caatattata t                           221
//
ID   TFP3        repbase;    DNA;    INV; 831 BP.
XX
AC   M29093;
XX
DT   30-APR-1998 (Rel. 3.03, Created)
DT   30-APR-1998 (Rel. 3.03, Last updated, Version 1)
XX
DE   Autographa californica nuclear polyhedrosis virus TFP3/2
DE   transposable element derived from Trichoplusia ni after
DE   infection.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TFP3; TIRs;
KW   TTAA superfamily; nonautonomous DNA transposon.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-831
RA   Wang H., Fraser J.M. and Cary C.L.;
RT   "Transposon mutagenesis of Baculoviruses: analysis of tfp3
RT   Lepidopteran transposon insertions at the FP locus of nuclear
RT   polyhedrosis viruses.";
RL   Gene 81, 97-108 (1989).
XX
DR   GenBank; M29093; Positions       1     831.
XX
CC   TTAA target site duplication.
XX
SQ   Sequence 831 BP; 237 A; 181 C; 161 G; 252 T; 0 other;
     cccattcgct gccgatctaa agagtaacaa tattacccag ttgccgccat actgtactat        60
     gcagcccgcc catcggcggt cccggcatct taattatgta tttttgcccg cccattggcg       120
     ttttcggcat gaaactgcag attccgacat gaatcgtttg atatcgcatc caaaaaaatc       180
     ctagaaagtg ctattaattt gacttaagat aacgcgaacc gataatataa gccttcattg       240
     cttttatcag ccagcccttt gtattggccc ggccgaccgg cagaagtgcc ggccggctgt       300
     ctgggacgtt ttaggccaaa attaaccctg ccgaagggtt ttttttaagt aagagacgtc       360
     caaatgtttt ttcttagtat tttttcacaa cttaatcaga actttctgtt gatcaatgtt       420
     tcgaaggttt tacaccttta tgtgaaatag atgataacac tttattttta tacacgaaac       480
     tcatgcttaa gaagtagcga gcagagaagt ttttacataa cttaataata gccgttagtc       540
     gttctaaaat ttacaaaagt ttgggacctc tgatataaaa tcttcggccc gcccaacggc       600
     gggctcggca tgacagtata gaattgcctt ttttcaaaac ttcaaatatc agcaggccat       660
     ttgagttgca aatcaatatt aataaaacaa atcattacac attatctcat tactttctga       720
     cgttatttcg taaagttatt gcagtttaaa atcaaaccgc ccatgggcgg tctcggcgtg       780
     aaagttaaaa aaatttttgc ccgccgatgg gcgggctcgg cactgaatgg g                831
//
ID   TIRANT_I    repbase;    DNA;    INV; 7692 BP.
XX
AC   .
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   An internal portion of Gypsy-like LTR retrotransposon Tirant - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; TIRANT_I; TIRANT_LTR.
XX
NM   TIRANT_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1507
RA   Viggiano L., Caggese C., Barsanti P. and Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster.";
RL   Gene 197(1-2), 29-35 (1997).
XX
RN   [2]
RP   1-7692
RA   Kapitonov V.V. and Jurka J.;
RT   "TIRANT_I.";
RL   Direct Submission to Repbase Update (31-MAY-1999).
XX
DR   [2] (Consensus)
XX
CC   TIRANT belongs to the Gypsy superfamily and it's most
CC   close to the ZAM endogenous retrovirus. TIRANT_I, an internal
CC   portion, encodes gag (position 1449-2582), pol (2537-6088)
CC   and env (6089-7690) polyproteins.
CC   There is a serine tRNA binding site [1] overlapping 3'-terminal
CC   nucleotide of the LTR [2].
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element [1]. TIRANT
CC   induces duplications of 4-bp long GC-rich target sites [1,2].
XX
FH   Key           Location/Qualifiers
FT   CDS           1449..2579
FT                 /product="TIRANT_I_1p"
FT                 /translation="MSKKFVYNLRKTTRSVVGVPPNTNRPPHPVRRPDSLL
FT                 PISEEPKSISSQTPNMDSGNDSARPTPSPLAPTVSGISSLISTTFKPKDIM
FT                 AFVEHLPTFDGTPRLLDRFITSVEEILMLIRGADQTPYGLLTLRTIRNKII
FT                 DRADEALELANTPLVWDEIKSNLIRLYSSKKSEANLLSELNTFSDNLTLGQ
FT                 LFFGISKVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKT
FT                 FVRIKSPSTLEQAYEQCQIEQTLYRAQNKRTNRPEQGPNGSDNKTYRNSYD
FT                 SNYRSGRNDRNDRRGPYSNSNSNSNSGQNRPFNSHNRTPQSGTKDNRANTS
FT                 NPFRAPSHSLNNIEENPQPDSNFQQTASGNQQGT"
FT   CDS           2537..6085
FT                 /product="TIRANT_I_2p"
FT                 /translation="FEFSANGLGKPTGYISPATHNPSLPFIKIKLSQTNPL
FT                 KFLIDTGSTHSFIDPKYVDPRNCVTLDTPITLKTALNSFKIYQNVSIPFPP
FT                 EFQITGKMTLLPFKFHSYFDGLIGMDLLSYLKTEIDLLNLNLKTPSTIIPL
FT                 WTHSNSTSNVFNISGHTKTILPLPVETKQGDFYIDSITINDDLIISDGIYN
FT                 AQNNIANFVITNYSERDQLLYLESPIKGMPYSTANNVELFSITSDTPQPQN
FT                 SAASLQALGVDHLSSEEKQSLLSLCKSYLDIFYNEDKSLTFTNKITHTIKT
FT                 TDDTPIHTKSYRYPYIHKEEVKKQIEAMLNQDIIKSSYSPWSAPVWVVPKK
FT                 ITPTGEQKWRLVIDYRKLNEKTISDRYPIPNIADILDRLGKAKYFSTLDLA
FT                 SGFHQIEMNPDDTPKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMDNIFGD
FT                 LIGTICLVYLDDIIIFSTSLQEHFIHLKTIFGRLRSANFKVQLTKSYFLRR
FT                 ETEFLGHIVSQEGVRPNPNKIEAIKNFPCPHSKKSIKSFLGLLGYYRKFIR
FT                 DFARLTQPMTQKLRGNNKSIIIDDEFKKAFEYCKTLLSNDPILQYPDFTKP
FT                 FTLTTDASNFAIGAVLSQGPVHSDRPVCFASRTLSAAETNYSTIEKEMLAI
FT                 IWAVQYFRPYLFGRRFTIITDHKPLTWLMNFKQPNSKIVRWRLQLQEYDFE
FT                 VVYKKGSQNVIADALSRPEASVNHNEALSIPQNVCPISEKPLNDFNIQLLF
FT                 KITPDTNNATLTPFKHKLRREFCKPNFQYDDVVCILRQSLKPNKTCAVFAP
FT                 DHIFQMVEQAYQTYFSAHSQFKLIRCLIFLPEITDSTEIEKIITDYHYNSN
FT                 HRGIDETYLHIKRQQFFPHMKERITQLIRKCETCLKLKYDRQPQKITYQIS
FT                 ELPSKPLDILHIDIYTINKNYNLTIIDKFSKFAAAYPITNRNCINVVKALK
FT                 HFISQFGIPKKLIYDQGAEFASDMFNKFCTQFNIDLHVTSFQQSSSNSPVE
FT                 RLHSTLTEIYRIILDVRKQQKLSSEHDEIMSETLITYNNAIHSATKHTPFE
FT                 LFNGRTHIFNQTIQFNNEHDYLTKLNEFREKLYPLITDKLSNDVVRRTLKL
FT                 NETRTDPVDLQPDTLVLRKENRRNKITPRFSIHKVKHDKGHTLITARNQKL
FT                 HKSKIRKTVLKKDKSNNVPNTDNN"
FT   CDS           6089..7690
FT                 /product="TIRANT_I_3p"
FT                 /translation="PHYLLTYHFRFTLVPTQAIHVHYLNDNAPIAKIELGK
FT                 ALLIERYKIISHVINLQDYSRCMEQFHLTINKFNPDSTLTDSVTILKTKLT
FT                 QAQVKLKALTPSYRNKRGLINGLGSLVKVVTGNMDANDNKEIHEELDNIKK
FT                 NSEVSNDNLQKQVMFNNEILIRFENITDHINNEQILISKFFDTSQNKIYKH
FT                 LNLQDTLLEEIQYLNRINYNIELFINHLNDITESMLLAKINIIPKFILNEQ
FT                 EMDKIKTILEKQNITVKNEQSIYNFLQMNTLNYEQKIIFNIKVPIFKQPFH
FT                 TLARLVPLPINNTYFVITPNYLAYNINNKKFHMTRKCPKLDNTFLCDENFY
FT                 VDTPQNNTCLEHLLNGENSSCDVRETGPITDVFEAERGYIFAFNVNKLKVS
FT                 LTNGSELSIMGSAIIRYINETIQINGIDYDGTVDTFPEQTDFDLPPMRKVT
FT                 RNTTITVLSLEKLHLEATQTMDKILAVHHNTIQHTWTLYTLLGLVTFLAVI
FT                 LWLHRRTKHIVHIHEDHHVPIYASSIPSLWPSLRTGGG"
XX
SQ   Sequence 7692 BP; 2697 A; 1855 C; 1250 G; 1890 T; 0 other;
     ggcgcagccg gtaggatgtc ctacctatta ataattacct acctgtaagt aaacatgtaa        60
     gaaacgaaac aaactatatg caagatgtcg actgaaagtg actaggaaca aatttttata       120
     aaacaaaatt gaagttgtga agtaccaaat gaaactcaaa catatattca aacacaggaa       180
     aaaaaaagag agaggaaaaa tgtaaaataa ataaatatac aaaaaaaaag tgcaagtgta       240
     ccgtactgcc gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata       300
     ctctgccgaa cgtcataatt tttttaaaaa agtgcaagtg taccgtactg ccgcactgac       360
     gtggaatcta tcgctgatca tcacgccatc ggtatgtcca tactctgccg aacgtcataa       420
     tttttataaa aaagtgcaag tgtaccgtac tgccgcgctg acgtggaatc tatcgctgat       480
     catcacgcca tcggtatgtc catactctgc caaacgtcat aatttttata aaaaagtgca       540
     agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg atcatcacgc catcggtatg       600
     tccatactct gccaaacgtc ataattttta taaaaaaagt gcaagtgtac cgtactgctg       660
     cgctgacgtg gaatctatcg ctgatcacca cgccatcggt atgtccatac tctgccaaac       720
     gtcataagtt tttataaaaa aaaaagagtg caagtgtacc gtactgccgc gctgacgtgg       780
     aatctatcgc tgatcatcac gtcatcggca cttacatacg ctggccaacg catcgccaaa       840
     gcctctatat acacttatat atgtgagcat acaatatcaa ctacaatcca atacatccac       900
     gtactgtacc gcctcgttgg catggaatca aacgctgatc accatgccac cgtggtaaac       960
     aaacaaagca ccaaagcctc tctaatacat tgtacactca aaacgcacac tgccatacgt      1020
     cggcgaaaaa tcaaaacata agcaaaaatc atttcaaacc aagcgaggct cattctgcgt      1080
     accacaacga caacgacact gcatgtgtag tggcgcaccc atgtctgggt agccgaggta      1140
     aggggaaaac gcttgagtat cgtcaagtgt tcttgccttt cactcttcta caatgggttg      1200
     ctacgctcat gtattgcaca ttcaaaataa ccaaaacaaa tgtactaaag aagtcgacat      1260
     atacagatat attttgtttc ctttcattgt gtaattttgt atatcaaaca aatactaata      1320
     ccaatcacat tgcagaatat aaaagggaaa atataaagcc aaagacagac acccatacac      1380
     tctagtaaac aagaaatttg ttcattattt ttcaatcata cataatatac taagtaacct      1440
     caaatttaat gtcaaaaaag ttcgtttaca accttaggaa aactacacgt tcagttgttg      1500
     gagttccacc aaacactaat aggcccccac atcccgttag acgtcctgac tcccttctcc      1560
     cgatttcgga agaacccaaa tcaatatctt cccaaacccc caatatggac tcgggaaacg      1620
     attctgcccg ccccactcca tcccctctgg cgcccactgt cagtggtatt agctccttaa      1680
     tttcaactac gttcaagcct aaagatatca tggcatttgt tgagcatttg ccaacctttg      1740
     atggtacacc tcgtctattg gacaggttta tcactagcgt agaagaaatc ctgatgctca      1800
     tcaggggagc tgaccaaaca ccgtatggcc tgcttactct gaggaccatc aggaacaaaa      1860
     tcattgatag ggccgacgaa gccttggaac tggcaaatac ccccttggtt tgggatgaga      1920
     ttaaaagcaa tctcatccgc ctctactcga gcaagaaaag cgaggccaac ttgttaagcg      1980
     agcttaacac attttcggac aacctgacct tgggccaact gttctttggt atatcaaagg      2040
     tgagaagcca actcttctcc atactcaaaa acagcgaaca caacaacact gttgtagatg      2100
     caaaaaaggt tgtctacaac gaggtttgtc tcaatgcttt tatgactggt ttgaaggaac      2160
     ctctcaagac tttcgtcagg ataaagtccc cttctacact tgaacaggcg tacgagcaat      2220
     gccaaataga gcagacctta tatagggcac aaaacaagcg aaccaacaga ccagagcagg      2280
     gacccaatgg atcagacaat aaaacctacc gaaatagcta cgacagcaat taccgcagcg      2340
     gacgtaacga ccgaaatgac cgtaggggac cctactctaa ctctaactct aactctaact      2400
     ctggccaaaa tagaccattt aattcacaca atcgcacacc ccaatccggc accaaggaca      2460
     accgggccaa tacatcaaac ccctttcgag caccttcaca tagtttgaat aatatagagg      2520
     agaaccctca acctgattcg aattttcagc aaacggcctc gggaaaccaa cagggtacat      2580
     aagcccagcc acgcacaacc cctcgcttcc ttttataaaa atcaaactat cccagacaaa      2640
     ccccctgaag tttttaattg acacaggctc tacacactcc ttcatcgacc caaaatatgt      2700
     cgaccctagg aactgtgtga ccttagatac gcccataaca ctcaaaacag ccctgaacag      2760
     ttttaaaata tatcaaaacg tctctatacc atttccaccg gaattccaaa tcacgggcaa      2820
     aatgaccctt ctacctttca agttccactc ttattttgac ggattgatag gaatggactt      2880
     attatcttac ctaaaaacag aaatagattt acttaaccta aatctaaaaa ccccaagtac      2940
     cattataccc ttatggaccc acagtaactc aacttcaaac gtatttaata tctctggaca      3000
     tacgaaaact attttgccac taccagtgga aaccaaacag ggcgacttct acatcgattc      3060
     aattacaatc aatgatgact taataatatc agacgggatt tataatgccc aaaacaatat      3120
     tgctaatttc gttatcacaa actatagcga gagggatcag ttattgtacc tcgagagccc      3180
     gataaaaggc atgccatact ccacggccaa caatgttgaa cttttcagta tcacttcaga      3240
     caccccacag ccccaaaact ccgcagcgtc gttacaagcc cttggcgtcg atcacctctc      3300
     ctctgaagag aaacaaagcc tactttcact ttgcaaaagt tatctagata tcttctacaa      3360
     tgaagacaaa tcattgacct tcaccaacaa gattacacac acgattaaaa ccacggacga      3420
     cacccccatt catacaaaat cttatagata tccttacatt cataaagagg aggtcaaaaa      3480
     acaaatagag gcaatgttaa atcaggacat tatcaaatcc agttattccc cgtggagcgc      3540
     ccccgtctgg gtcgtcccaa agaaaatcac tcctacggga gagcaaaaat ggcgtctagt      3600
     tatcgattat agaaaactca acgagaagac tatatccgat agatatccaa tacctaacat      3660
     cgcggatatc ttagacagat tgggcaaagc caaatatttc tccacacttg atctggcaag      3720
     tggattccat cagatagaaa tgaatcccga cgacacaccc aaaactgcat ttacagtaga      3780
     ggggggccac tacgagttca ttagaatgcc gtttggcctc aaaaatgccc cagccacatt      3840
     ccaaagggtg atggacaata tttttggaga ccttatcgga actatctgcc tagtttacct      3900
     agatgatata ataattttct caacctcctt acaagaacac ttcatacact tgaaaactat      3960
     ttttggaaga ctcagatctg ccaactttaa agtccaactc acaaaatcct acttcctcag      4020
     gcgggagaca gaattccttg gccacatcgt ttcacaagaa ggtgttaggc caaatcccaa      4080
     taagatcgaa gctataaaaa actttccatg tccccacagt aaaaagtcaa ttaagtcttt      4140
     cctaggcttg ttgggatatt acagaaaatt tatcagagat tttgcgagac ttacccaacc      4200
     catgacacaa aaattaaggg gaaacaataa atcgatcata atagatgatg aattcaaaaa      4260
     ggcctttgaa tattgcaaaa ccttactgtc taacgaccca atcctccaat acccggactt      4320
     tacaaaacct ttcacactaa ccacggacgc aagtaatttc gcaataggag ctgtcctatc      4380
     ccaaggtccg gtgcatagtg ataggcccgt atgttttgct agtagaacct tgtcggctgc      4440
     ggaaacaaat tattccacaa ttgagaagga aatgctggcc attatatggg cggtccaata      4500
     cttcagaccc tacctctttg gcaggagatt cactataatc accgatcaca aaccactaac      4560
     ttggttaatg aatttcaaac aaccaaattc taaaatagtt aggtggagac tccagcttca      4620
     ggagtacgat ttcgaagtcg tctacaagaa aggctctcaa aatgtaattg ctgatgctct      4680
     cagtagacca gaggcctctg tcaaccataa cgaagcccta tcaattcctc aaaatgtttg      4740
     ccccatctca gagaaacccc ttaatgattt taatattcag ctcctgttca aaataacccc      4800
     agatacaaat aacgccacac tgaccccgtt taaacacaaa cttaggaggg aattctgtaa      4860
     acccaatttt cagtatgacg acgtagtttg cattcttagg cagtcgttaa aaccaaacaa      4920
     gacatgcgcg gtatttgccc ccgaccacat ttttcaaatg gtggaacaag cctaccaaac      4980
     ctacttctca gcccacagtc aatttaaact cattagatgt ttgatcttcc tccccgaaat      5040
     tactgatagt acggagatcg aaaaaattat aaccgactat cactataata gtaaccatcg      5100
     agggatcgat gaaacatatt tacacataaa acgacaacag ttcttcccac atatgaagga      5160
     gagaataact cagttaattc gaaaatgtga aacatgttta aaattaaaat acgacagaca      5220
     acctcaaaag atcacttacc aaatatccga actaccttca aaaccgttgg acatcttaca      5280
     tatagacatt tatactatta acaaaaatta taaccttact attatcgata aattttctaa      5340
     atttgcggct gcctacccta taactaatag gaattgcatt aacgtagtta aagccttaaa      5400
     acatttcatt tcccaatttg gtattcccaa aaagctgatc tatgatcagg gagcagaatt      5460
     cgctagcgat atgttcaata agttctgcac tcaatttaac attgacctac acgttacgtc      5520
     ctttcaacaa tcctctagta actctcccgt tgaacggctt cactcgacac taactgagat      5580
     ttacagaata atacttgacg tcaggaaaca acagaaactc agtagcgagc atgacgagat      5640
     aatgtccgaa accctaatca catataataa cgctattcat tctgcaacta aacatacccc      5700
     ctttgaacta tttaacggac gtactcatat attcaaccaa acaatccagt tcaataacga      5760
     acacgactac ttaacgaaat taaatgaatt tcgcgagaag ttgtaccccc tcatcacgga      5820
     caaactttca aatgacgtag ttaggagaac cctaaaatta aatgaaaccc gaacagaccc      5880
     cgtagaccta caaccagaca ctttagtcct taggaaggaa aacagacgta ataagattac      5940
     acccaggttt tcgattcaca aagtcaaaca cgacaaaggt catacattga taactgctag      6000
     gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt ttgaaaaaag acaaaagcaa      6060
     caacgtaccc aacactgata ataactgacc ccactacctc ttaacttacc atttcaggtt      6120
     cacccttgtg ccaactcagg ctatccatgt ccattattta aatgataacg cccctatagc      6180
     caagatagaa ctagggaaag ccttactaat tgagaggtac aaaataatta gtcatgtaat      6240
     caacctacaa gactacagca gatgtatgga acaattccat ctgaccatta ataaatttaa      6300
     ccccgattcc acgttgacgg actccgtcac aattttaaaa accaaattaa cccaagccca      6360
     agtaaagctc aaagccctta caccttcata tagaaacaaa cggggtttga ttaacggatt      6420
     ggggagtcta gtaaaggtgg ttaccggcaa catggatgcc aacgacaata aagaaataca      6480
     tgaagaactt gacaatataa agaaaaattc cgaagtcagt aacgacaatc tccaaaaaca      6540
     agtaatgttt aacaacgaaa tacttatccg gttcgaaaat atcacggacc atataaataa      6600
     tgaacaaatt ttgataagta aattctttga tacctcacaa aacaaaatat acaaacactt      6660
     aaacttacaa gatacccttc tggaagaaat acaatattta aataggatta attataacat      6720
     agaattattc attaaccacc taaacgacat aacagaaagt atgctattgg cgaaaataaa      6780
     tataattccc aagttcatcc taaatgaaca agaaatggat aaaataaaaa caatactgga      6840
     aaaacaaaat atcacagtca aaaatgaaca aagtatatac aatttcctac aaatgaatac      6900
     actaaattac gaacaaaaga ttatttttaa tatcaaagtc ccaattttta aacaaccttt      6960
     tcataccctc gccagactag ttccattacc aataaataac acatattttg taataacccc      7020
     aaattaccta gcttataata ttaataataa gaaatttcat atgacccgta aatgccccaa      7080
     actggataat acattcttgt gcgacgagaa cttctacgtt gatacaccac agaacaacac      7140
     atgcctggaa caccttttga acggagaaaa cagttcctgc gatgtacggg aaaccggccc      7200
     catcaccgac gtgttcgagg cagagagagg ttacatcttc gcattcaacg tgaacaaact      7260
     gaaggtatcc ctaacaaacg gctccgagct ctcaataatg gggtcagcca tcatcagata      7320
     cattaacgaa acaatacaga ttaacggtat cgattacgac ggcacggttg acacgttccc      7380
     tgaacagacg gattttgatc ttccccccat gcgaaaagta actaggaata ccactattac      7440
     ggtactaagc ctagaaaaac tgcacctcga agccacccaa acaatggata aaatcctggc      7500
     cgtccatcac aatactatac agcacacctg gacactctac actctgctcg gattggtaac      7560
     gttcctagca gtcatcttat ggctgcaccg acgaacgaaa cacatcgtcc acatccacga      7620
     ggatcatcac gtaccaatct acgcgtcatc cataccttcg ctatggccgt cacttcgaac      7680
     tgggggggga gg                                                          7692
//
ID   TIRANT_LTR  repbase;    DNA;    INV; 417 BP.
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   Long terminal repeat from D.melanogaster retrotransposon Tirant.
XX
KW   LTR Retrotransposon; Transposable Element; TIRANT_I; TIRANT_LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-417
RA   Viggiano L., Caggese C., Barsanti P. and Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster.";
RL   Gene 197(1-2), 29-35 (1997).
XX
RN   [2]
RP   1-417
RA   Caizzi R.;
RT   "TIRANT_LTR.";
RL   Direct Submission to Genbank (27-NOV-1995)R. Caizzi, University
RL   of Bari, Institute of Genetics, Via G. Amendola, 165/A, I- 70126
RL   Bari, Italy.
XX
RN   [3]
RP   1-417
RA   Caizzi R.;
RT   "TIRANT_LTR.";
RL   Direct Submission to Genbank (14-JAN-1997)R. Caizzi, University
RL   of Bari, Institute of Genetics, Via G. Amendola, 165/A, I- 70126
RL   Bari, Italy.
XX
DR   GenBank; X93507; Positions       1     417.
XX
CC   Internal sequence of TIRANT LTR retrotransposon is reported in
CC   Repbase as TIRANT_I.
XX
SQ   Sequence 417 BP; 132 A; 121 C; 65 G; 99 T; 0 other;
     agttaccacc ccacccccta aacccccacg cctctaaaca aatcatcgga cactcaaccg        60
     ggaagacggc aactggaaca ccgcatccgg ccgaatgctg acattccggc cgaatgctga       120
     cattacacaa aagtcgcact gcaacattgt ccccagctag ccagccacat gccgagtcgg       180
     catgttcatt atgcttacaa ttaagaacct atgtacttat gtataagatg aaaacggagg       240
     actcgagtag ccactctctg acaataaact tcttactgat tttgaacttc aagaaagtca       300
     gtcgtattct ttattggaaa tcttcacact acaactatct gctgaaactt aaaaaccttc       360
     atacatttac acatcatatc ttcacaaaag gctccaccct cgatcacgga cttaact          417
//
ID   TMSATE1     repbase;    DNA;    INV; 142 BP.
XX
AC   M30656;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   T.molitor satellite repeat E1.
XX
KW   SAT; Satellite; Simple Repeat; Satellite repetitive element;
KW   TMSAT1; TMSATE1.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-142
RA   Ugarkovic D., Plohl M. and Gamulin V.;
RT   "Sequence variability of satellite DNA from the mealworm Tenebrio
RT   molitor.";
RL   Gene 83, 181-183 (1989).
XX
DR   GenBank; M30656; Positions       1     142.
XX
SQ   Sequence 142 BP; 41 A; 26 C; 30 G; 45 T; 0 other;
     gaattctgta attcttgcgt cgttttactt cgaaatgtac aagttccacg acgaaattcc        60
     gattcgcact tagtttttcg tgattctaca cagttgcgag cgaaaaaacg tatttagagg       120
     aaagttagcg tcttggaaac ag                                                142
//
ID   TOM_I       repbase;    DNA;    INV; 6112 BP.
XX
AC   Z24451;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   TOM_I is an internal portion of TOM, a gypsy-like endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; TOM; TOM_I; TOM_LTR;
KW   env; gag; pol; internal portion.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-6112
RA   Tanda S., Mullor L.J. and Corces G.V.;
RT   "The Drosophila tom retrotransposon encodes an envelope
RT   protein.";
RL   Mol. Cell. Biol 14(8), 5392-5401 (1994).
XX
RN   [2]
RP   1-6112
RA   Corces G.V.;
RT   "TOM_I.";
RL   Direct Submission to Genbank (08-JUL-1993)CORCES V. G., The Johns
RL   Hopkins University, Biology, 34th and Charles Sts, Baltimore,
RL   Maryland, USA, 21218.
XX
DR   GenBank; Z24451; Positions     475    6586.
XX
SQ   Sequence 6112 BP; 2443 A; 1286 C; 921 G; 1462 T; 0 other;
     ggcgcagtcg gtaggatact tcaagtatcc gaaaaaaaag aaccgcgagt ggaaaataaa        60
     ttaaatttta taatccgcaa ttcgcaaaaa tacgctcttc aactgggaaa ataaatccaa       120
     ttcggttatc ccaaataagt ggaagcaaaa caaaattcaa aaactcaaaa acctgtaagt       180
     ccaaaggcaa ggtaaaaaca tcgaactaag tgacaatcaa ataaaaacat cgaactaagt       240
     gacaatcaaa caaaaacatc aaacaaagtg acaataaaaa ataaaaaata aaaaataaaa       300
     aaataaaata aaaataaaaa taaaatttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa       360
     aaaaagaaca acaacaaaaa caaaatggca caaccagcac aaccagagaa tacattaaac       420
     gagagcaacc ttgctgaggc ccgtggacaa cttaaggatg tccctccatt tagaggagag       480
     ccagaaacac tttttacctt catcagcaga gtggactaca tactgtccct ctaccatacc       540
     aatgatgtgc gacaacaacg catcctgctt ggagccattg agcggaacat agagggtcat       600
     gtgactagaa cattgggtct gccaaccata gaagactggc cgaccttgag gtccagaatg       660
     atcaacgagt ataaaccaca ggcgccgaac tacaagctgc tggagaactt ccgcgagacg       720
     ccctacaagg gaaatctgcg tgcattctgc gaggaggccg agcgacgacg ccaaatactc       780
     atctccaaat tacatctgga aggtaatcaa tcaaacctta ttatttattt gcaagcggtc       840
     cgagattcca tgaaaacact agttcgaaaa ttaccaattc aattgtttac aattttggcc       900
     catcacgaca ttccagactt gagaagttta attaacattg cacaaaatga gggcatttat       960
     gaagaacata ttaattttga aacaaataaa aatattgaaa ttaaaaataa aactccaaat      1020
     ttttaccaaa atccgaaagc atttaaaaat tacccaatca atcaatccca ataccaaccg      1080
     agataccccc aataccctca tccattacaa cccaacttta acccatacat gcatgcaccc      1140
     agacccattt atacacaaca attatctaac aaccaaccca tgggacccgg acaaacttac      1200
     cccggaccca acaggtacat gaatcctcaa ccaattttta acagaattcc atttcccaaa      1260
     tccaatttta acctaactcc tcaaacacaa caaccacgta tgccatctaa cccaaacttc      1320
     ccactacaac aaacaaccaa acgaccaaga ccatcggaca gcgaacaaac caaaatgtcc      1380
     attgacgaac tcagattaca agaagcacaa gaatacgaac aaaattatca acaaccatac      1440
     gaacaagaat attacgacta cactcagtac caggaccaga cttatgaaga acagtgtcag      1500
     gcaccaatca atcaagatca agccgaaatc aattttgacg aaaattttca gtcaccagcc      1560
     ccggaagata ccaatactta ataattaccc acaagggtta cgctcacaaa tgtttgattg      1620
     acacaggatc cacaatcagc atgatgcgaa agaatttttt ttctctacca atacacaata      1680
     ctgaatgtga agtttttaca tcaaatggcc cgatgacatt aaaagattca ataactctgc      1740
     caagcaacaa catatttaga acacctgaac aattttactt acacgacttt tctgacgact      1800
     acgatgtgct aattggcaga aaactgctca ataaagcaca aggtataata aattataaaa      1860
     ctcatactat tacacttttc gataaaacct acccattgat agacacagat tcaaacaaag      1920
     gtcaattttt ctacacacaa gattcatatg agaaaccaat ccccaaatca gataaaaaaa      1980
     tagacttttc accattccgt ctggatcacc ttaatccgga ggaaacctat aaattaaaac      2040
     atttattaaa caaatttaaa gatttgcaat attttgaagg agagcgtttg acattcacaa      2100
     acacaatcaa acatgtatta aacacaacac acaattcgcc catttattca aaacaatatc      2160
     cacttgctca aacacatgaa aatgaggtag agaaccaggt gcaggagatg cttgagcagg      2220
     gattgatcag agaaagtaat tcaccctata atagtcccac ttgggttgta ccaaagaaac      2280
     ccgacgcttc ggggaaagca aaatatagag tagtcattga ttacaggaag ctaaatgaaa      2340
     taaccattcc cgatagattt cctattccca acatggacga aattcttgga aaactgggaa      2400
     aatgccagta ctttacaaca attgatttgg ctaggggttt tcatcagata gaaatggatt      2460
     cagaatccat acagaaaact gcattttcaa ctaaacgcgg tcattatgaa tacgttcgca      2520
     tgccatttgg cttaagaaat gcacccgcca cattccagag gtgcatgaat aacatactcc      2580
     gaccattaat taacaaacac tgtttagttt atttggatga catgattatt ttttccacat      2640
     ctctagacga acatttaaac tcattgcaat tggtttttga aaaactgtcc gaatcaaatc      2700
     taaagttgca actagataaa tgcgaattcc tgaaaaagga agcaaccttt ctaggacaca      2760
     tcgtaacacc cgatggaata aaaccaaacc ctcttaaagt agaagccata gcatcatacc      2820
     caatcccaac aaaagtaaaa gaaatcagag cattcctcgg aatgactggt tattaccgaa      2880
     agtttatccc aagctacgct gacatagcaa aacccatgac ccgctactta aagaaaggag      2940
     caaaaataga cataaacaat cacgaatatg tggaagcatt cgagaaactt aaaaccctaa      3000
     taacaagcga accaattcta caattgccca attttgaaaa gaaatttgta ttgactacag      3060
     acgctagtaa cctggctctt ggagctgtcc tttctcaaga caatcacccc atatccttca      3120
     taagcagaac attgaatgac catgaattaa actacagtac cattgaaaaa gaattacttg      3180
     ccatagtttg ggccacaaaa acattccgtc actacttgtt gggaagacat ttccaaatag      3240
     ctagtgacca tcagcctctc agatggttac ataatttaaa ggagccaaat gccaaactgc      3300
     agagatggag aattagattg gctgagtttg actttcatat tgagtacata aaagggaaac      3360
     agaattcaat tgctgacgca ctgtccagaa tcaaggttga ggagaatcat ttcagtgaag      3420
     ccacccaaca tagtgcagta gaagacaata atgatcttat ccagttaaca gaaaaaccaa      3480
     taaatgtatt caaaaaacaa ataatattca ttaaatcaga tcagaatagt gtaaggcaga      3540
     caaccgtttt cggaaattca ataaccacaa ttcactataa caacatgact gttgagaacg      3600
     ccaaacaatt cttacttgac cacttcattt ccaaaagcat tgccatgtac atcgtgagcg      3660
     atgccgattt cgagatcatc ctgacagcct atagggaaat tattaacccc tcttatacta      3720
     aagtgactcg tagcctcatt ttattgaaca acgtgagctc atatgctgag tttaaagaga      3780
     tcatacttca agcccatgaa aaactgttgc atccaggtat ccaaaaaatg actaaattat      3840
     tcaaagaaaa tcattatttc ccaaatagtc aactactaat tcaaaacatc ataaatgagt      3900
     gccgtgtgtg taacctagcc aagacagaac acagaaacac aaaaatgcct tttaaagtca      3960
     cacctagccc tgggcattgc cgcgataaat ttgtaataga catctattca tccgagggta      4020
     agcattacct tagttgcatt gacatttact cgaagttcgc cactctagaa caaataaaaa      4080
     caaaagattg gatagaatgc aaaaacgccc tgatgcgtat ctttaaccaa ctcggaaaac      4140
     ctacattgtt aaaggcggat agggacggtg cattttccag cctagctctt aagcaatggc      4200
     tcgagagtga gggtgttgaa ttacaattaa acacagctaa aacgggagtg gcggatgttg      4260
     agagattaca taaaacaata aatgaaaaaa ttcgcataat caattcctcc aaaaacgatg      4320
     aaatcaaact gggcaaaatg gaaaatattc tttatattta caatcataaa accaggcatg      4380
     acacgaccgg acaaacaccc gctcacatat ttctttacgc cggacaacca accctggacg      4440
     cacaaaaaat taaagaacaa aaaataaaca aattaaatga tgatcgtcag gaatacgaca      4500
     tagacaccaa atttagaaag ggcccccttc agaagggaaa attagaaaac ccatttaaag      4560
     aaaataaaaa tgtcgaacaa accgacccgg accattacaa aattactaat cgaaacagaa      4620
     ctactaacta ttacaaaacg cagtttaaaa aacgaaagaa attaatgagg tccccattcc      4680
     acaggtatct ggcgcacagt gatgatactg tccctgttgc ttaccatgag ctatgcccaa      4740
     caaattcaga taggcggcat tgatacaaac catggatatc ttcttttttc aagtaaacca      4800
     attcaaagac catcagcatt cgaacatcat tgcctaacag tcaacctcac agaaataaac      4860
     accataacca catattttgg aaacaaaata caaaacagta cagacacacc ccggatcaaa      4920
     tttttgtata acaaactgat taaagaacta aacgggatca ctctacacaa agaacgtaga      4980
     caaaaacgcg gtcttttcaa tttcgtaggc tcagctttta aattcctttt cggcacactc      5040
     gacgacaacg acagaataca attcgaagaa aaattaaatt cggaggcgga aaattcaata      5100
     aaaatccacg aatttaacga agtaatgcag tttgttaatg acggattgca gagaatcaaa      5160
     aagtatgaaa acaatagaaa tagcattgac accttggttt atgaactaat gcagttcatt      5220
     gagtacattg aggaccttga aatgggaatg cagctctcac gactgggact gttcaaccca      5280
     aaactactta attacgacaa gctccaaaac gttaacagcg aaaacatatt attaaccaaa      5340
     acatccactt ggattaacta taagaataat gaaatactaa taatctcaca tattcctatt      5400
     aatcatgttc taattaacac tattaaaata atcccttatc ccgatagaaa tggttaccaa      5460
     ttggagtact caggcagcga ttcttacttt gaaaatgata ataaaattta taatcaagac      5520
     aacaaagaag taaatagtga atgtattgca aatataataa aacgaagaaa cccaacatgt      5580
     aattttgtac cggcccttac aaaagaaata attaagtata ttgaaccaaa tgtaataatt      5640
     acatggaatc tgacccaaac aactcttaca caaaattgtc aaaattcaaa cagcaacata      5700
     caaataaagg gaaataaaat tataagaata acacaatgta aagtaaaaat cgaaaatatt      5760
     attttaagcg aaaattattt acacccagaa attgatctaa cacctttgta tccaccgctc      5820
     aacataacta aaataaaaat cttaaaacac aatgacatta taaaaatgat ttcccaaaac      5880
     aatatcacac tttatacaat tattataccg gctattctgg ctttggtcgc aatgattctt      5940
     attcttaagt acataaactt taatccattt atatttttgt atataaaatt aagaaaacaa      6000
     actgaaagaa atcagccaca acttcaagaa aatgaacttg gagaaaaccc attacccaca      6060
     ttgtatccat caatgccagc ccaagtatag gctgcctttt taagggggga gg              6112
//
ID   TOM_LTR     repbase;    DNA;    INV; 474 BP.
XX
AC   Z24451;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   TOM_LTR is a long terminal repeat from TOM, a gypsy-like
DE   endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; Gypsy superfamily; TOM; TOM_I; TOM_LTR.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-474
RA   Tanda S., Mullor L.J. and Corces G.V.;
RT   "The Drosophila tom retrotransposon encodes an envelope
RT   protein.";
RL   Mol. Cell. Biol 14(8), 5392-5401 (1994).
XX
RN   [2]
RP   1-474
RA   Corces G.V.;
RT   "TOM_LTR.";
RL   Direct Submission to Genbank (08-JUL-1993)CORCES V. G., The Johns
RL   Hopkins University, Biology, 34th and Charles Sts, Baltimore,
RL   Maryland, USA, 21218.
XX
DR   GenBank; Z24451; Positions       1     474.
XX
SQ   Sequence 474 BP; 169 A; 103 C; 54 G; 148 T; 0 other;
     agtgacatat tcactctcac acccatctac taatatccaa ttactgcata tccaattact        60
     gcagccaagt aaacaaataa caagagctgc gcatcatttt tgctgtgcag aaaatttaat       120
     ataaacaaat gaccgatatt cagcggcgat cgcgccttaa gcatcttcgc ttatacaaac       180
     caaataatcc ataagctctc tcaatgaatc aagcgaccaa ctgcactctc attctaatgt       240
     aaacaataga caatagccaa aaccaagatt ttcatctctt tgtaaatcag tcttaagctg       300
     aaatccaatt gacacacacg aaacctttct ttcgtcccgt acaattttaa taaataataa       360
     ataacaaaac atttttttta aaattggttt ttattttatt aaaaacggat cttagcgttg       420
     tccttagtct ttcgacggga catttatttg actcaaaata taaactattt tact             474
//
ID   TRAM_I      repbase;    DNA;    INV; 2708 BP.
XX
AC   Y08905;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   D.miranda LTR retrotransposon TRAM; an internal sequence.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   LTR retrotransposon TRAM; TRAM_I; TRAM_LTR; internal portion.
XX
OS   Drosophila miranda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2708
RA   Steinemann M. and Steinemann S.;
RT   "The enigma of Y chromosome degeneration: TRAM, a novel
RT   retrotransposon is preferentially located on the Neo-Y chromosome
RT   of Drosophila miranda.";
RL   Genetics 145(2), 261-266 (1997).
XX
RN   [2]
RP   1-2708
RA   Steinemann M.;
RT   "TRAM_I.";
RL   Direct Submission to Genbank (16-OCT-1996)M. Steinemann, Heinrich
RL   Heine Universitaet Duesseldorf, Institut fuer Genetik,
RL   Universitaetsstr.1, D-40225 Duesseldorf, FRG.
XX
DR   GenBank; Y08905; Positions     373    3080.
XX
CC   The size of the retrotransposon TRAM is 3452 bp, including
CC   long terminal direct repeats (LTRs) of 372 bp on both sides.
CC   LTR sequence is reported in Repbase as TRAM_LTR.
CC   The element is flanked by a 5-bp target site duplication, ATATG.
CC   The putative primer binding site (PBS) for minus-strand priming
CC   is
CC   complementary to 18 nucleotides of the 3'-end of tRNA(Trp).
XX
SQ   Sequence 2708 BP; 717 A; 680 C; 632 G; 679 T; 0 other;
     taaaatttgg tgaccccgac gtgatctctg agttgcagtg tcaattaata atcattcgcg        60
     atcgacattc gttagcccta gcaaattttc gtcggttaag cacaattcgg tgctaaaaca       120
     cacttacata cacctacata cacgcattgc tggctattaa tttctctgtc gcacaattcg       180
     gtcagtgcag tgcggtaggc agtgcagcga actcactaat acacacaagc ggagtacaaa       240
     gcggaatcgg acagctcgca cagccgcaca gctaaaggca ttagctgtaa tccctttgct       300
     ttcggttccc acgtttatac gtatacaggg tgtctttttc ggtcgtgctg agagactctt       360
     ttaaaacctc aacatggcag cacctgagcc taccaatgtc gcgaacgcag caatgccgag       420
     tgatgtagat ttctacaagc acaaggccga gtccatcgcg cgccaactaa aggccatgga       480
     tcgctttctt accaaggaag agcttgcccg agttagatga ggcagaactt caagctcgct       540
     tagagcaaat cgagcgaatg aatgcggatt tcgatgccgc tcaaacgagc cttgaaaggc       600
     tggatttcct gcagttagcc catgatgccc ggctggactt ttcgaatgtt tatgtcaagg       660
     ttaggtccag gctgtcgcgg gagttgatgg ctgctcgcac ggtaaatgtt gccaattgaa       720
     cggctcggca tactctcgag gggaattcgt cgttgttcgc ctataatagt ataggccgtt       780
     ctcgaatgcc cgagttgcag cttccgcgat tcggtgggaa ctacatggat tggccagaat       840
     tccactcgat gttctcgaca atggtgcaca aagaccatcg tataccaatc atcgaaaaat       900
     tccaatatct tcgtggatgt ctagatggtg ctgcgctgga tacgattcgt tccttggaac       960
     tttctgagga gaattacgac aaggcgttga atttactaat gttgcgattc gataataaac      1020
     tgttacattt tcaggcacac gtcaaggcta ttttcgggct gcaaggggtg gagaagggct      1080
     cggctatcgg cttgcgcgcg ctcaggcaca aaatcaattc gcacttgcgg gcacttcaga      1140
     ccttggcgac cccgcaggag atatccgatg ggttgctgat cttcatcata ggcacgaaac      1200
     tggaccacaa aacaaaggag aaatgggatg agaacttgcc gacgtcagga ttgcctcggt      1260
     ggtcaagcat ggcctcattt ctggaagcga gatgtcggat gctggagaat ttgggatcag      1320
     ccatggcaac aagtcctagt caacaggtgg gagaagacaa acctgtcacc cttatcacct      1380
     ccagtaacga ccatcctaac cccatatgta accattgcaa ttcctccgag cattacatat      1440
     ctagatgtca ggcattcctg aatctctctg cgtttgaacg acacaaagaa gcaaagaaga      1500
     gccgcttgtg tttgaactgc ctcaacaaag gccatgaatt gcagaggtgc aggtcaggac      1560
     tttgcaggca ttgccaggcc aaacatcaca cgctactcca cattccatcg ggaactggtg      1620
     cttcatcttc ctcttcaccg gccgaggaat cgatccagca agaggccgcg actgtgcttc      1680
     tagcaagcgg gtgttccagc cctcccccct cgatacagaa atctcagcct agccagaacg      1740
     tgttgctacc tactgccctc gtccatgtaa cagatcgtta tggagcactt atctcatgtc      1800
     gtgccatttt ggattctgca tcacaggcaa actttgtaac atctagactt gctgatcagt      1860
     tgcagttgga tcatcgctcg tcttatgttc acatctctgg aatcggagat tccattctac      1920
     cttcgagcaa gtctgtacat atagttgtac aatcccagga cgcaagctat cgagcttcct      1980
     tcgctgcaat tgtcaccaac tcaattacgg aaatgcagcc taacttcggc ctagacgcaa      2040
     aggattggcc aatgccgaat aatctaaaac tagctgatcc taatttctcc aagccccaac      2100
     gtatcgatct gttgataggt tctggtttgt tcttcgattt aatgtgcgtc ggacagattc      2160
     gactatcagc ccaattgcca acattgcagg agacaaaact tggttggata gtatcaggaa      2220
     gcattgatag ctcggagaat aagcgtgcag ctttagccgc ttttgaaaat tcctcgtgca      2280
     tctctattga cgattttcga cccacaacgc tggagtacca aaacttagag cagcaatgca      2340
     ggaagcagct gctcgagtgc caggtgcaag tggaaaaact gcgatcggag aatcaggaac      2400
     tgcagcgcga acttttccat atattaaaaa cctacatatc cacgctaaat gaaattcaac      2460
     tttcaacaat ttctacattg ccaaatttcc tgccattcta tacaaataca gaggttcccg      2520
     atgatcaaga cgtaatcacg acaagccgcc ttcgtaaaga agcgccgatt tctcgcttcg      2580
     acgatcattc cagcgtagcc gccagctgcg cccaagcaag catcttcaag agggccgttg      2640
     gaaaattagc ggttctgccc cttcaggatg gatctgttga aagcctttgc cttccaacgg      2700
     ggggtgaa                                                               2708
//
ID   TRAM_LTR    repbase;    DNA;    INV; 372 BP.
XX
AC   Y08905;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   D.miranda TRAM retrotransposon; long terminal repeat.
XX
KW   BEL; LTR Retrotransposon; Transposable Element;
KW   LTR retrotransposon TRAM; TRAM_I; TRAM_LTR.
XX
OS   Drosophila miranda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-372
RA   Steinemann M. and Steinemann S.;
RT   "The enigma of Y chromosome degeneration: TRAM, a novel
RT   retrotransposon is preferentially located on the Neo-Y chromosome
RT   of Drosophila miranda.";
RL   Genetics 145(2), 261-266 (1997).
XX
RN   [2]
RP   1-372
RA   Steinemann M.;
RT   "TRAM_LTR.";
RL   Direct Submission to Genbank (16-OCT-1996)M. Steinemann, Heinrich
RL   Heine Universitaet Duesseldorf, Institut fuer Genetik,
RL   Universitaetsstr.1, D-40225 Duesseldorf, FRG.
XX
DR   GenBank; Y08905; Positions       1     372.
XX
CC   Internal sequence of LTR retrotransposon TRAM is reported in
CC   Repbase as TRAM_I.
XX
SQ   Sequence 372 BP; 83 A; 94 C; 81 G; 114 T; 0 other;
     tgttcggagc agaacccagc cgattagctg cttgccaaat agcacctaat tcttggccct        60
     cagccgctta ttttgtttgt tacttatgtc tatgtcactc atttgtttgt taaagctttg       120
     cgcttgcttg ccctgctaaa cgctctctgc cagctcgctc ttcgctatct ccgctttgcg       180
     tctgcctacc gacgtcggcc gagcgaagct gcgcttagcg atcggagcgg caatgtaaag       240
     ggcaggcaag ccacacttgc aatttggatg tcacgcatta aagaacatat cgtaatttta       300
     tttctgcgcc gagttttgtt taattcgaaa taattagtcg gccgattggg gataaaaaac       360
     attatctcca ca                                                           372
//
ID   Transib-10_DAn repbase;    DNA;    INV; 1340 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-10_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1340
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 286-286 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. Partial sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           855..1337
FT                 /product="Transib-10_DAn_1p"
FT                 /translation="MDKFTTKYSKWMEGHLCLNLIGNASKGKSMKKNAGRP
FT                 KISFCLKGARGKRNDANCLSAAQKHNVGLLVQAAGVAARRNKLNDLAFILQ
FT                 LLAYNPAKAKMLRKLLSNPVEQPVRSSTEEALALILDQGFSKAQYCAIRED
FT                 AKCRNADIYPNYKEVAEKKXDC"
XX
SQ   Sequence 1340 BP; 420 A; 234 C; 305 G; 380 T; 1 other;
     gcactatggg gaatttgccc gattttgtgg aataaatgta ttttttaaaa gtatgccgat        60
     tttaattttt tttattttaa tgtattaaga aaacatcaaa ctttttttta acataccgga       120
     aatgttaact taacagtcta gtatttaaat accaactgtt aaagccatat gttgcaaccg       180
     catgttgatc gataacattt ggcttaaatt tgaagctcat tttcaattct taaattcttg       240
     aacaaaccac aataaaacag tgacatttaa aatgaatttg aattcttcag gtatgtactt       300
     tgtgtaaata ctaatatcgg cggcgggcgc cccgcctacc atatatggtc attctcgggc       360
     cgcggcgggg gggaaccggc ggacggcggg ggccgggggc ggcgcggggg ggggcgccga       420
     tattttgctt aatatgtgcg tccaattcta acaatttgta actgtagcag gtgatgtttt       480
     tgtttgggtt ttggaaagaa agttcaactt tcaatagagt ttaaaaaaaa tgttcaaaat       540
     agttcagtga gtgtctatat ccatgttgta gagtcattca ttgtgaattc gggacatatt       600
     gtcttattgt gcgctgggcg cgacttttcg caaaatttca ttttttagaa accaacctct       660
     caatcagcaa cgcagccctg ctggatgtat ggcgtcggca gaggggtttc gcagaaaagg       720
     aacatgctgt gttaactttt gtaagcgagc aagttgatcc caatattttg gaattaaatc       780
     aaagggtctt aagagaaaaa gcccgtattt tttcccgtaa tttatcacga aactggcgaa       840
     aatgccagag gaagatggac aagtttacga caaaatattc aaagtggatg gaaggccatc       900
     tttgcttaaa cttgattgga aatgcaagca aaggaaaatc aatgaaaaaa aacgctggac       960
     gtccaaaaat atccttttgc ttaaaaggtg caagagggaa acgtaatgat gctaactgtc      1020
     tctcagcggc ccaaaagcat aatgttggtt tgctggttca agcagcaggg gtagcagctc      1080
     gaagaaataa gctcaacgat cttgcattta tattgcagtt actagcgtat aatcctgcaa      1140
     aagccaaaat gcttaggaaa ctgctaagca atcctgttga gcagcctgtg cgatcttcga      1200
     cagaggaggc attagcttta attctggatc aaggcttcag caaagcgcag tattgtgcaa      1260
     ttagagagga cgccaaatgc aggaacgcag acatatatcc aaactataaa gaagtagccg      1320
     aaaagaaaaa kgattgccga                                                  1340
//
ID   Transib-10_DTa repbase;    DNA;    INV; 2099 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2099
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (13-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   5'-end truncated; a sample sequence.
XX
SQ   Sequence 2099 BP; 714 A; 367 C; 388 G; 630 T; 0 other;
     atatcccaca tttgttaagg atcgcataat tttggcaaaa cgttaaacgg aaagaatcat        60
     cgtttataaa caaatattct tattggcttg agtggaagca aactattgtt ctaaaacact       120
     gttcaccagc aaaggattcc catttatctc gtggacgtcc caaaaaggat ttctctgagg       180
     tttcgaatag gacgaaacgc cgatgaatag aggaggttgc gattgtgggt gggtgatttc       240
     caagaggtga tttccaagag aataaatccg cttccgaaat aaaaatttta gaagaatgag       300
     ctctttttat ggaatgtcaa ttaaccaaca ccaatattta atgatacgaa catttattaa       360
     ctcaaaagta tcgcataaat tgttgcccag ctatgaccaa gttctgtgtg ctaaacaaaa       420
     aagctacccg aataatattg ttgtcagcga atctcatgca gaagttgaac ttcaaaattt       480
     attggatcac actgcgacac gcatattgca acttcaaaat taagtaatca acaatatcaa       540
     taatgatcag ctgattttgt tcggaaagtg gggatttgat ggtagcacgg gtcatgctga       600
     atataagcag acgatgatgg atagcgacct agcagacagc actatgtttg tgacatcata       660
     tgtgcccctt agactcgttt caaagtcgga ccattcaaaa attgtttgga agaatcaacg       720
     gccatcatct acccgatatt gcagaccaat tcggttccaa ttcaaaaagg agacgactca       780
     gctttgcctt gacgaagagg cgtatttcga aaaccaaatt gattagctta attgtagcat       840
     ggttgcaata caaaatcgaa caattgaaat cgaacactct ttgcaactga ccttggttga       900
     tggaaaagtt tgtaatgcgt taagtgatac cacatccaca aaatgctata tatgtaatgc       960
     caagcctact gaaattaata atctagaaat ttgtttaaaa aaagaagttc atgaggagcg      1020
     atttgagttt ggcctttcac cacttcatgc gtatattcgc ttttttgagt attttattca      1080
     cttatcgtac agattggacg aaaaaaagtg gcaaatacga tcacaagagg ctaaagataa      1140
     gatgttatta agaaaaaaat ttctccaaaa tgagttcagg aacaaaatgg gcgtaatagt      1200
     agataagcca agagctggag gaagtggaac atcaaatgat ggcaacacag ctagaaaatt      1260
     tttcaataat cctgaaatat ctgccgacat tacgggaatt gaaaatgact taattaccag      1320
     agtctcaact ttgttgcaag cgttatcttc gggctataag ataaatccag aaaaatttgg      1380
     tgactatgct cttcaaaccg caaagcagct gattgacaaa tacccctggt tttatcttcc      1440
     cccatcactt cataaagttt tactgcatgc acctgacatt ataaaacatt ccttactttc      1500
     gattggaaaa ctttcagaag aagccgctga agcaagaatt aaggacatta aaaaattccg      1560
     tcttcaacat acacgcaaaa tttcaaggat cgcctcaaat acagacttgt ttaacagact      1620
     gcttttaagt tctgatccat ttattagtgg acaaagaaaa gtaaattata aggaaaagtc      1680
     aactctacta aagtcaactc ttttgttact tgatgaaacc atttaaatat aatttttttt      1740
     tgagtaaatt ttttattatt gttcgttttg cttgttataa cttttttggg aaggtgggtg      1800
     tggggggagt gagtaatcac tcccacactt ttatattaca gttctaagtt tgtaaataac      1860
     ttacattaaa aagttcagcc tattatgatt acaagaaatg aatttatgac tgccctctca      1920
     tgtgaacgca accactagaa aatcgttcct atggaagcta taggatatag tggtacgatc      1980
     tggccaattt ttgtaacata tatttataat atttatttag atttttggta aaagtttcat      2040
     agcgatagca catctagaag tatttatggc cgcggctcca tacaagcccg accactgtg       2099
//
ID   Transib-11_DAn repbase;    DNA;    INV; 1578 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.03, Created)
DT   10-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-11_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1578
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 287-287 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 38-bp TIRs.
XX
SQ   Sequence 1578 BP; 553 A; 264 C; 281 G; 480 T; 0 other;
     cactatggtc cagacgaccc cttttgttgg ccaaaattca aattttaaaa gttaaaatat        60
     cgaagtcatt ttaatcgcat tttattcgga gaagaccgac tatcaatgct gcatactaaa       120
     aatttttata gatggcgcca cattcacgaa atcggaactt aaactcagct ggtcatactg       180
     aaaaaagttt gaagtgtaaa agtgaaaaaa aagagtcttt ttcaacatca cattgcgcaa       240
     aaaatacaac aattttacca atctttagac atgaataaga ttcagtgggg tttgtactac       300
     gtgttgtgta taatgaaatg ttatatattg ttgtggtgtc ttcgtagtta tatgttaaag       360
     tgaatcgtct gaactgtgaa aattgtgtag aaatctcgtt tttaaaaagc tgtagaaagt       420
     gagtccagcc tagtccaacc ttgaaacctt ttgtacgtcg tagagtaatt aattatcttt       480
     cgattgtata tagtcagaat tgccactttt aaccactttc tttggaattt gcgtttttag       540
     ctcataacct aaaattcgac aactcagaat tgtttgaaat atggaagtct gtgaagaccc       600
     aagaacaaaa gtacaaagca attcttgatt tttttaaatc taaaactagt ggcgaaatat       660
     ttgagaaaaa aatgcaagct tttgaggatg ccagtaagaa aatatgctac cgtttaacgg       720
     taaaatggaa gaattgcaga tcgaatgcaa agctatttca aaggagacat tccgattggc       780
     tctgttcaca aacttgtatt ccggttggaa ggagaaaaca ttcaatagga cgccctgtac       840
     tagactactt agaaaaatct cgaagggctc aaagaaaaca ggtagcagat cttgtggtgt       900
     ctgaaggggg aaacacaagt ttattaattc aatcggctag catggccgca cgaaaacagg       960
     gtaaacacga tcttgcattt gtgcagtgtt tccgcccaaa aggcccacat cgaatgtttc      1020
     agcgatacat ctgatccaat catttcgtca gtcaacctgg atagacgcat tcataaccca      1080
     aaaaaaatga agctcccacc tgaagtcttg gaaatgctct tatgcgaagg gggcccaagt      1140
     gaagacttcg aatatgaaga ggaattcgat gacagtctta aatacgaact aaattttgaa      1200
     ctagagaatg aaaatcaaga gcttttacaa catttgggtc tgttaattaa tcaaatttaa      1260
     aaagcataat acaaacttaa acgttatcta tttcagatcc ctgaagctgt ttcctttatg      1320
     tggaaccctt aatttcattg atttttatta aaactgtata ttaatattat gtttttgatc      1380
     caatacaacc atattttaaa acatttaata aaataaaaaa aatatatata aaaagaggcg      1440
     gtgccacacc catttttttt taaatttcta ctgcctatgg attatattaa cccaataaaa      1500
     aaaactagat cgaaatatct tgttccattc gtgagttatt aatttatgcc aacaaaaggg      1560
     gtcgtctgga ccatagtg                                                    1578
//
ID   Transib-11_DTa repbase;    DNA;    INV; 2056 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   15-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2056
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (15-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   3'-end truncated; a sample sequence.
XX
SQ   Sequence 2056 BP; 674 A; 356 C; 392 G; 634 T; 0 other;
     cacagtggtg gcgcccatag gccaacctaa aatgggcaaa gggtgtgcaa cttttattat        60
     aatgtgtata ataatcgtac ttgttaaatt gttctcgtta catgaatttg aaataataca       120
     tgttttgtgt ctattttgtg aacgtctttt ttatgtttag ctaaggtttt agtgatgatc       180
     ccataaaatt ccacaatttg ttggaatgcc aatttgttcg tctggctttc aggtaatatg       240
     tgtgttaaaa ttggctgcag aaatttgcag atgtggctac aatagtaaaa atactaacac       300
     catcataaat ttttcatgag caaaacgggc cgaaaagcta attttttttc gctttttctt       360
     gttgtgctgt tgctttgtct tcgtctttcg tgattgtgaa ttgttttcca acactaaata       420
     ttgaattact aatagattat attttttttt gtttatttcc ttgcttttaa tattgatagg       480
     tttttctttt tcgcacattc ttatgttttt gatttatggt gcaatgaaga tgtagccaac       540
     gcagaaaggc aaaaaaagct ctttgaggat attgaagaga aaatcataaa acatggatat       600
     agtgttgatt cgggggaact atcaatgcga attggctaca tatgcaaaag aattgtaacg       660
     ttttgggaaa attacaaacg caagaaaacg tcgattctcc aataccaagc tgattggatg       720
     aatataaaga aagaattccc ttaagctgtg cccaaaaggt gtctcaatta acttccaaaa       780
     gttctgaccg tggacgaccg aaaaaaattt caatgaagct tctgaacgca caaaacgacg       840
     aagaattgct gatctgtcga aaaccgacga atctattggt aatggtacgc tcatgcaact       900
     catctcaagc aacgcttacc gaattcaatg tggatgaagt cttgtcactc ttccttggta       960
     caaatatgag taaacatcaa tatttgctta ttcgtagttt tataaattgt aagtgttcct      1020
     ttaatctact gccaagctac gaaaaccttc tgtcagccaa agcatcaact tatcctgaaa      1080
     acatcagtgt cagcgaatcc cacgcagaag ttgagctgca aagcttattg gatcacacgg      1140
     cattgcgcgt tgtcaaactt caagatgatg tccttaagtg caatggtgat gatagcgtgg      1200
     ctgacttgat tttaattggc aagtgggtat tcgacggcag tactggtcat tccaagtata      1260
     agcagaaaac tgtgaaaaat aaaattgatg attcgagttt gttcgtgcct tcctatgttc      1320
     ctttacaatt aattactcgt gaaaatgatc ccaagaaacg caaagtaatt ttaaaaatcc      1380
     ccgtccggca tccacacgtt actgcagacc aataagggtt caattcaaaa aagattcagc      1440
     acaattgtcc atagacgagg caacatactt tcgagacaaa atttctgcgc tgaagccgta      1500
     tacatgtaaa gtactatcca aaaatattat aataacacat cgtttgcagt taaccatggt      1560
     cgatggaaaa gtttgtagtg ctttcagtga aacatccact tgtaaatgct acatatgtga      1620
     cgcaaagcca agcaaaatga atgatttgga aaaatgctta aacaaaaaag tttgtagtgc      1680
     tctcagtgaa acatccactt gtaaatgctt catatgtgac gcaaagccaa gcgaaatgaa      1740
     tgatttggaa aaatgcttaa acaaaaaggt tcggattgtc tccattgcac tcatatataa      1800
     ggttttttga atatttcttg catttggcat atagattgca cgtgaaaact tggcgaattt      1860
     gtaccataga cgataaaaaa gcttttaagg ataggaaagc acaaattcaa gcagacttcc      1920
     gtgctcaaat gggattacat gtggacaaac cgaggagtgg aggtagtgga acctcaaatg      1980
     acggcaatac agcacgaaca ttttttagcg atacaaaatt gtctgctcat aaaaaaaatc      2040
     ctaaaattat ttccga                                                      2056
//
ID   Transib-12_DTa repbase;    DNA;    INV; 3005 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   15-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3005
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (15-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence.
XX
SQ   Sequence 3005 BP; 1035 A; 540 C; 533 G; 897 T; 0 other;
     cacagtgtaa gattttgcca atctagcgga acttttagca aaagttgaac tatttttgag        60
     gtcgatgagc ttttagcagc acttttagaa atgttcaact attacgaaaa caggcacaaa       120
     acaaaacaaa taattttttt ttgggagata acggttttta aagctggact ttagaaatgc       180
     atgcaaaatt gcactgggaa gcgagcaaca gttgacaaag tttagtctta tcaattgcat       240
     cgcgtgatca gtgggagcag ccaaaagtta tttttcccag aaactttaga caattcttaa       300
     tccactttta aaaacaaaca aatttttttg ggaccaaaaa atttttttct cattttttgc       360
     aaaaagtgcc aaaatgtaag tgtatttttt catatttctg ttttttagtg gaaaaaaact       420
     tatattattc tatcgtattc tatccaacca gaacatactt cgcatgcatt cagtctgatt       480
     cagaatctaa aataaaatct tgcccatatt ttgcccaaag accttctatt tagaaatgag       540
     tgaaataagc cgtgctgcat ttttcgaggt ttggtcgaaa aacataaaaa ccgctcagcg       600
     agacgctctt gtaaagcacg cagtgatggt gtttggcaat gacattgatc actccaaatt       660
     gaaattacac atgagtaaac tgtcttttga gtttcaaaac agatttgaga aatctaggag       720
     agacaaggcc aggtttttgg ctcataatgc aagttggctt caggtcacat taaatggcga       780
     agactatcgc attgatgtca ttgcttccac ctcaagtaca agagggaggg cacaaaaagc       840
     ctattctgag tgttgtccta aaacacaaaa aaagaaaagc caagaattgt tgtcaacgat       900
     agatgaggat caattgctat cagccgcaga acaggctttg cgggcggaag gtaaacggga       960
     ttcagctaaa ttaattaacg aattatcaaa tgctcccgcg tcgacggcga ctatatttaa      1020
     gaaagctaaa ttatcttcta atagcactgc aaaacgcctt tcagcagatc aagcacttgc      1080
     ccttatgata gacagtaaat tatcaatgca ccagtataat accttgcggc accatacaaa      1140
     aattgtctgt ccaaaattat atccatgtta tgatctcgtt aaggagtcta aaatgttatg      1200
     ctatcctact ggtataaaag taagagaatc ctatgctgaa ataagtttac aatcccttat      1260
     tgtaaaaggt aaaacggttg ataagtgctc aagaagacat ttttaagtca ctgtctccac      1320
     tagacgatgt acacataata ataaaatggg gatgcgatgg agctgaacag agccaataca      1380
     aacaaaaaag tacagtggat atgtcagatg gttcgatatt ttttatatca atggttcctc      1440
     tgcaaatatg ttcgttaagt ggagcggcga agtctatata ttggcaaaat ccagctcctt      1500
     cgtccacacg gtactgccga cccataagat ttgttttcac aaaagaaaca cgggataaaa      1560
     tcaaagagga ggtataacat atcaaggaac aaataccatt tttgattccc acttttatta      1620
     agtttaataa tttgaaattt catgttaaag caactcttgt cttctgcatg atcgacggta      1680
     aagtctgcaa tgcactgtcg acatatacat catcacaagt gtgttatata tatgatgaac      1740
     tctttagctg ccttagagaa tcgtgaggtc gacactgaaa tgctcgcctt tagtctctca      1800
     cccctacatg cgtggattcg atttatggaa tgtttgctcc acatttcttg tagaattgat      1860
     ataaagactt ggtatgtgac tggcgaagag aataaggcaa agctagctgc acgaaaacgt      1920
     gatatacaag agggctttaa gaaagcaatg ggtatcttga ttgatatgcc caagcaaaag      1980
     gcaggtaata ccaacgacgg taataccgca agaagatttt tctctgacgc tgaaacaact      2040
     tcaaaaataa cccgaataaa tattgattta ataatcaggt ttcgcacaat tctgacatgt      2100
     atagcgagct gttgcccgat aaatatatca gcttttgagc gatacttatc tgaaactgta      2160
     gagctctact tgcgggatta ttcgtggtat tacatgccag taactgtgca caaaatttta      2220
     tttcatggaa agaaaattat ttcttcctgc atccttccca ttggcaattt ctcagaagaa      2280
     gcccaggagg ccagaaataa ggaagtgcga agttttcgtg aacatttcac taggaaaact      2340
     tcgcgcgaac acacaaatac tgatatcatg cacaggttac tgatatcatc cgaaccattt      2400
     atagcaagtt tgcgagcacc aaaaactgga cacttagagc ttccagaaga tgtgtcccaa      2460
     cttttatcaa aagatggata caccgacgac agctgtgact cgaattcgga gtcggactag      2520
     ctagtaaaca tttttctatg aattatatat tgttaccatt taaaaaaaaa ataaaaaacc      2580
     aaagtttttt tgtttttgtt attaattatc tttaatataa gaccttattt gcagctattc      2640
     agcttataac atcggagtta cagctaaaaa cataagcata taaccaaaat ccaacatttt      2700
     ccaaaaaaac aaaaaaaggg gtctccaaac actaaaaact aaatttttta agttggcgaa      2760
     aattaaacaa gatatacgaa aatagttaaa aatttcgaaa atttttaaaa atttttttat      2820
     ttgtgttttt atcttaaaaa aaaactgttt ttttcacatt ttacgccttt aaaagtgcca      2880
     cgcccatttt tttaacgtaa tttttgggct tactaaaata ttcactccaa atttgaagac      2940
     gatatcctaa aaatacgaat cctactgatt taagtcgccc tagattggca aaatcttaca      3000
     ctgtg                                                                  3005
//
ID   Transib-13_DTa repbase;    DNA;    INV; 2032 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   16-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2032
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (16-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   A reconstructed sample sequence; 3'-end truncated.
XX
SQ   Sequence 2032 BP; 693 A; 374 C; 395 G; 569 T; 1 other;
     cacactggtc ccaatgccca atatttttkc aaaaacctat tttttttaag ttacgaaaaa        60
     aaaaacattt tatctcctta gaataatata cgctgcattt aaaaatcgca atttcgttac       120
     tgaaattgca gccatgctaa attcggtggc cctaaaagtc aactgttcgt taaacagaaa       180
     ttttgacttt ttgacaagct gaacaaaacg aagtaaaatg aaaaagacct aagttatgca       240
     gttatgcatg gacgcaaaac cgaaagcctt tacaactttg tgttacagca tcgaattggg       300
     aacttaaagc taaacataga ggatcctttg aaaaagagag ttacgaactt tgttgcttat       360
     gttgatgctg aaataaaaaa atgctctcgg atagttccaa ggtatagggc gcagaaagaa       420
     agttttctta aattacgttt tcaaccaaaa tttcagccat cagactatat aaaagaatcc       480
     gccaaaagtg gaggacggcc acgattgagc tatgataagg ggcgttctcg attaaagcat       540
     agattagcta gcgaagtttc agcagaaaat gataatgatg tcaatctcct tgctcatgca       600
     actactatcg ctgccaagaa agcgtgcttg aagcccgtgc aggaataaac aacgaaagct       660
     gagcctgtac cattaactcc agaagaagct ttagattttt tgatggagaa tggctttacc       720
     aaaaaacagt acatgagcat tagactggaa agtaaaaaga gaaattgtga tatttaccca       780
     agctacaagc aaattatcgg tgcaaaggat aaatgcagac ctaaaggtct atatattaca       840
     gaatctgtcg cgtctgtctc attacagagc ttgttaaacc acacagccga gcgttttatg       900
     ctgttacaaa aagacgtgtt caatgtttat aaagatattt ccggtttgac attaattgcc       960
     agttatggat tcgacggttc aactgggcaa agcctttata agcaaaattt cgcactggaa      1020
     gctacagaca cattcgatca gtctctgttt gtgacaacac taattccgct taagttagtg      1080
     gattcaatag gtcgagttat ttggatgaat cggtctccgc agtctgttcg attttgcagc      1140
     cctctaaaaa ttgaattcat aaaataaaca caaagtcata tcaaagcaga gaaaaaacga      1200
     ctggactctg aaattgaaaa ttatgtgccg tttgagaaca acaatgtttt ccctataaat      1260
     tttgaactga aaatgaaatt aattgatggg aaagttctta atattttgac agaaaccaat      1320
     tcgacccagt tttgcccaat ctgtggagcg aagcccctta aattcatgac tgtttttgat      1380
     gttcattcag acaaatttac gccgaagaat tcgagtatgg agtaagtcct ctacatgcgt      1440
     ggattcgttt tttcgaattc gttttaaaag tgtcatgtag aattggtatt gacaagtggc      1500
     aagtacgtgg ccctcaagac aaagaaaaag tggctgcccg gaaaaaagga aattcagcac      1560
     aaattatggg aggagcttgg gctccatgtc gataagcccg aagcaaatgg aagtggcaat      1620
     accaacgacg ggaacacagc gaggagagca tttttccatt tcgaaaaatt tctattgtat      1680
     tttaatagca attttaagca actttgaaat agatgcttca aaatttaagt ttctgcgcaa      1740
     aaactgaatt tttatatata ggaaaatatc cctggtaccc aatgtcagct actgtatata      1800
     aagtactagc tcatggggcg cagatcgtta ccgcatcgtc ccttccactt ggctgcctag      1860
     gcgaaaatgc atccgaagct cggaacaaaa tttataaaaa tgatagacgt tcgtatgcaa      1920
     gataaaatag tcgcttaaac accatgactg acgtttttta tagagcactt gattcatcag      1980
     atccgatggt ttctagcatc caaagagtac atcaaaaacc gaagcctttt cc              2032
//
ID   Transib-1N1B_AAe repbase;    DNA;    INV; 2736 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.01, Created)
DT   17-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1N1B_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-2736
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2736
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 146-146 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. 5-bp TSDs; usually CANTG. The
CC   sequence 894-641 is an insertion of Helitron (~84% identical to
CC   Helitron-N1_AAe).
XX
SQ   Sequence 2736 BP; 873 A; 494 C; 485 G; 884 T; 0 other;
     cacactggtc caggaagcta atttaggcgg acatgaggtt ttcgtcaaga tttattgatt        60
     ttagagccat agtttattct gagaatatgt tcagaatttt cagtactaca aaatgtacgg       120
     aacaaaaatt tttttacggt gatcgcaaga gtgacgcata cgccaacttt tttattttaa       180
     cgaatcgtaa gttggtatgt tcagcaaagt tgtagcaaat gatcatagaa acaactttgc       240
     cgaacaaact ttttctcggt tttgcttcag agccgagata attaagtatt tttaataaaa       300
     aatcgttttt tgctcttaag tgttttattt tttagtttta ttggcctact atgttctaca       360
     aagtttttat acttatcatt tgctacaact ttgctgaaca taccaaagtt gtatttctta       420
     tggttttcat gttatttgag tttttcatct taaaattagc tattttgtat gccttgtatc       480
     tcaactatga gcacctcaaa aaaatatatc tttccaccaa atgattttgc agtctttcaa       540
     gtacctgtgt gcaaaatttg gagaagatga tatttttcta tctcgtttaa aatcggtttt       600
     actaatagac gatatgagat aaatccatat ttattgaata ctagtggtcc cggcaaactt       660
     cgtcttgcca tcaagtaggc tgttgaaaaa tgccatggag cctcctatac aaaatgacag       720
     ttcagttctc gcccgttttt ccgactttcc cggagacttt cctagacttt ttctacacac       780
     gaacacgtcg gaacccttga cgaaggcaac agtgaaataa ttgtgcaaat cggttgaccc       840
     gttctcaagc catttcgtga catacaaaca ccactccatt tttatttata tagattcata       900
     gccatgttca actcacaaaa gtcatggcta cctaagcata tcaaaccaaa ggtaacacgt       960
     gtatttatat agaaatataa agtacatcgt ttttcagttg ttttcgatta acttggaagc      1020
     ttctgcaaga aattcatcgt cttttcctct acctgtattt aatctattcc taagcaagat      1080
     caccgggttg gaagtcaaca taagccgtat aaaatacata tacaaaattt acagtccgat      1140
     tgaattctgt ggcatgattt tcccagaatc ttctgatgga ttccacgttt catgtttttc      1200
     tttggtaatg cggcatgccg gacaacacca cttccgtgca atagttgtag acgtatcagt      1260
     aagtgtaaca gcattctaaa ggatcgccac gaaaagccct cgaaggaagg ttagggctga      1320
     gactgtacga acctcttcca gctggtagga actcaaatgg tcgtaacacg gcatgccgct      1380
     ttttacggga agtagatatt gtgtatttct ttcactactg aactgcgaag tgcggcctca      1440
     taagtccgaa agtgtgaata aaagtgaggg attgcattga atcctgttgg tgtcttcaga      1500
     gaacttattc ttcgatttac gaagaataag tcccccgaag acacctaccc gatttgattc      1560
     aattgcgcac ttttgttagc gtttccgcac ttgtaataac ttcttttcac ggatctcaat      1620
     cattttaaaa gtggtcaact ttaatcggaa gattaacgag gaggcatttg aacagttttt      1680
     gtcagaaacg tactgttagt atcgccagtt ctacgattgg tatgtactct ctccaacggt      1740
     gcaaaaacta ctttcgcatg gagtgatgtt gtccggcatg ccgccgaaga agcataaaaa      1800
     atgcggaata aatccatcag aagattctgg gaaaatcatg ccacagaatt caatcggact      1860
     gtaaattttg tataagtatt ttatacggct tatgttgact tccaacccgg tgatcttgct      1920
     taggaataga ttaaatacag gtagaggaaa agacgatgaa tttcttgcag aagcttccaa      1980
     gttaatcgaa aacaactgaa aaacgatgta ctttatattc ctatataaat acacgtgtta      2040
     cttttggttt gatatgctta ggtagccatg acttttgtga gttgaacatg tatgaatatt      2100
     caataaatat ggatttatct catatcgtct attagtaaaa tcgattttaa acgagataga      2160
     aaaatatcat cttctccaaa ttttgctcac aggtacttga aagactgcaa aatcatttgg      2220
     tggaaagata tatttttttg aggtgctcat agttgagata caaggcatac aaaatagcta      2280
     attttaagat gaaaaactca aataacatga aaaccataag aaatacaact ttggtatgtt      2340
     cagcaaagtt gtagcaaatg ataagtataa aaactttgta gaacatagta ggccaataaa      2400
     actaaaaaat aaaacactta agagcaaaaa acgatttttt attaaaaata cttaattatc      2460
     tcggctctga agcaaaaccg agaaaaagtt tgttcggcaa agttgtttct atgatcattt      2520
     gctacaactt tgctgaacat accaacttac gattcgttaa aataaaaaag ttggcgtatg      2580
     cgtcactctt gcgatcaccg taaaaaaatt tttgttccgt acattttgta gtactgaaaa      2640
     ttctgaacat attctcagaa taaactatgg ctctaaaatc aataaatctt gacgaaaacc      2700
     tcatgtccgc ctaaattagc ttcctggacc agtgtg                                2736
//
ID   Transib-1N1_DSuz repbase;    DNA;    INV; 1257 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1257
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 121-121 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 5-bp TSDs (mostly CNNTG).
XX
SQ   Sequence 1257 BP; 437 A; 183 C; 182 G; 455 T; 0 other;
     cacactgggc cagccgatcc gatttttggc caaaaatacg tttttttttt ttaagaaaat        60
     gacaagaccg agtatggagt cctttttatt atacattaaa ctaatttatg ccaaagtttc       120
     aaagaattcg ggcaagtagt ttttttttac cgtattttta aagttaaaaa ttcatcaaat       180
     attgatggaa atgaaaaaaa atctagaagt caaagatgct gatgtagctg ttcgacttct       240
     tcacagaact tttagaagtc attattttca acaagtaaaa aattataaat agctcttctg       300
     acttacttgt ttcctaaaag aaactttttc gttgattttt actgcttttt ttagcaaatg       360
     agtactttgc ttttcgagtg cttttgagtg ccatccccga atgaagtcat tacatcaaaa       420
     ataaattctt taattaattt actaaaatcg ctcatcgccg actcgatgcg gttttgcctt       480
     agttttcagt aattttagtt ttagttgatg gcttaatttg aagtcgaacc attttgagga       540
     cttatgtatg cccaaaggta tgctgcattt cttgtacttt cttcggagaa gaactaaaat       600
     atattataaa aatataaatg tagcttacat aaatacgtag tcgaaggcct cgtagctagc       660
     actaccccct atgttagtat tagtttttta aactttacta tgatctcaaa ttaataaata       720
     aataaataaa tagcatactt ttgtgatgac ttcagaaaat gtcaaattaa cattaaacga       780
     attaaaaaac aatatttttc aaacaatttt tttctaataa tttgattata agaatctaaa       840
     cagatagcaa gaagaaaaaa atagaaaatt ttgttaggtc gattattaaa taaacgttca       900
     agtgggagcc tccgaaagta gcaattttta acggttcata aatctcaaac gacatcatat       960
     tttatagtgg tgttaatttt ttttaatttg ttttctctca tacttaatcg tgtatgaaaa      1020
     tggattgagt gcgtcttcta gttatttttt taaaaataaa aaaccgaaaa gtatgtaaaa      1080
     ttttccgatt ttggtttgga ttatctatac catataaaat tccaataaat tttactttta      1140
     gttcgttgaa aagttcaatc ttttaagaga taaatgcaaa aaactgcatc cttctaacta      1200
     tcccaggaaa gaaattacag atttttggcc aaaaaatgaa ctttctggcc cacagtg         1257
//
ID   Transib-1N1_LMi repbase;    DNA;    INV; 1724 BP.
XX
AC   .
XX
DT   17-JUN-2014 (Rel. 19.12, Created)
DT   17-JUN-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1724
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3312-3312 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1724 BP; 543 A; 298 C; 339 G; 543 T; 1 other;
     cagtggtctg aaaggtccga aaagctggcc aaaagtcgaa aaatgaaaat cataattatg        60
     ggtttagtcc catacaatca tgtttagagg acasagggca gcactgttta ttaagtcaca       120
     gggaggggaa gctacctttg ataccgaaga aagtagttca aagttacggt tggcggagta       180
     acacacgcta cgcagaaccg cttcggatta catgccgtgc ttaaagtgtg aataactttt       240
     gttgtaagtg atcattttca attgtgtttg atggaggatg ttaaggaagg tacatagaat       300
     atgtttataa gttacgtgct cataaattta tgctcggtat ttggtaaaag tcacttcaaa       360
     acgtaacctc ataatgtcct ccattcacac gtagatctat cttaaatgat cgaaaaagta       420
     atgatcgccg gagatcctgc gatgtacgat agtgtaatat gtagcgtagg atgtcttccg       480
     tcaaaatgta caagaattgt ctgcgacttt ttgcgattct cgttgtattg ccatgtttac       540
     tgagaccgtg cgcggtgagc cagctagcac ggagtgcaaa gggtccgcta cgggtattct       600
     atatccagta tgcactttga gagttaatac aagacagtgg tcgaatatca ctcgccgctt       660
     atattacttt cacggtgttc attaaataat ggagttggca aaataagaca atattgaatc       720
     atgtgtacat ttcgacaaac tacatatgtt taaataattt aaatctgctt ctgtttagta       780
     ttacatggca ttaatttacc taccagggtc gggtggcaac caattagtat gcactcgaaa       840
     ggaaatctac atcatgataa aaaatgactt ggagtcggat ttgaacaagc agctcacggt       900
     tttggaggat aaagtggctg aaaaggccaa gatgtatttc aaaatacatc gggatacatt       960
     acatgacgtg aaaaagctgt tgtgcagttt gagatcaaga tagaaagcat cgtctaggaa      1020
     aatcgaacga ttctttcagc aaaatgagaa atagcttaat tcttcaacaa cttttacggt      1080
     tagtaaatct atttgtaata tcgatgattt taaaagtttc gattactatt agaatgtgcg      1140
     tttttaaata tttcaattac aatttacgtg taataaatga atttcatatt tttcgtagaa      1200
     tgcttctact actgaatctt ccacggcacc tacgattggt cgaccttaca cggagttcac      1260
     aggtgctagt gatcgaacga aaagagaaga tctgaacaac tgcgtgttaa atacagcaca      1320
     gaggagttgg catcgcaact gcaatggaaa tcagtctgtt gttgctttgt ctgacaatta      1380
     tgaatcagcc tcagacaacg atacagatta attttgtaac gacatttttt tgcacagttt      1440
     caaaatgaac actgttgtct tgttattgta aaaacttttt tcaatgtaat taatcctata      1500
     cttgtaatca gcgatcccaa atatccttat tttacaaatt tacattaaaa tgtaatacgt      1560
     ttttattaaa taacttgggt atattcgatc cgccatttgt aatttttgac ttttgccctc      1620
     aaaatcgaat tcagcgaccc caaaaacctt tatatacaaa tttccaatct tatcgaatat      1680
     ttttcgactt ttggccagct tttcggccgt ttcagaccac tgtg                       1724
//
ID   Transib-1_CoFl repbase;    DNA;    INV; 6814 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6814
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2113-2113 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.5-bp, CG-rich TSDs. 486/487-bp TIRs.
CC   The exon-intron structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2276..3032,3459..3902,4621..5209,5996..6046,
FT                 6120..6165)
FT                 /product="Transib-1_CoFl_1p"
FT                 /translation="MPSYPTNQKSRQKKVLKGRPPTAKKGTGKGGRPRIET
FT                 EKASSSTLYRRAYEVLDYVKYNIELLKLAVKLCQIHLAKNDTHEEMSRTDY
FT                 YIEEMEVEDHTVQPSTEIAEYRHSPKSALAFYCEHDFSKKSYVALVRDLRI
FT                 RKCNIYPSYSMIQKEMKNCLVLPYDVHTEVEIRVSLQNILNKTAQQLCSAV
FT                 ATSWSKQDLQHLQLTVTLGFDSSAGHCNPQQGYTDSNVINQDPLQSLFVSS
FT                 MLIVQLQSRSNANCTWKNPSPQSYRFCRPVRIALEKETLESILTEYNRLNR
FT                 EISTLTSYAFQLDNGQEAEVSFKVFVTLLDGKCVNAIVGNKATCRCNICFC
FT                 TNSQFDKDVSTDFHPIDESFMELGLGLLHAEIKAFENLTHISYRLPLQTWT
FT                 INANIKEKADERTQIVRNRIYEKFKVRVDQVLQGHGTTTNGNVARKCFAEP
FT                 EKFAEVLELDETLVKNISLVISLFKSKHALVLSKMSTLCIETYKKYYECYP
FT                 WAKMSPTLHKLLAHSCEIAKKFPLPLAYFSEDCSESWHKYYRRNWTAHARQ
FT                 ISRKLRILDVFNRAVYMTDPIISLEYIEQRQRLKANHKNVQDLSGFTRSQL
FT                 LENEIMLEINENSHEKKNDDDISDTETESD*"
XX
SQ   Sequence 6814 BP; 2426 A; 1000 C; 1075 G; 2313 T; 0 other;
     cacagtggga taaactgata tttttcgttt caaaactatg taaacttcct tagaagaaat        60
     attttttcat gaaagttttt ggatcttata ggtatgatga caaggaataa cagaaaatta       120
     aggagaaatg taaaaaatga gatcctaacc tacaaatttt ggattatttc agaaattttt       180
     caatttaatt tttttttttt ttttctgttg gaaaataagt tttaaagagc tggtattata       240
     ccttcatact tattttacat atattcttca tttttttaaa taaggtatca aaattgcgtc       300
     taaaaagtga cttttttgtc aaaatcaagc ataattccaa aaaaaaatta ttttcttcag       360
     aaagttttca gaagtgtaag tgttgtggct gggagtgata aataactact caatgatata       420
     aaaaaaaaat taacctatat actcatgtgg tatttggaaa tttttttcgt gttttgaaaa       480
     ttcttttttg ttcttttttc aatattattg ttatatgcag cgatagataa aacagggcac       540
     agttacatgg cttatagctt tagttactaa gccttgacac ggaggtacac ttatttgcgt       600
     attacaccgg gcgccaaaat aggtgagtgt attaaactca agcaaagtgc attaccatcc       660
     ttgctttatc cggtccacgc attccgaaca aacttattct attgattctc ataatttacg       720
     tgttcggggc ttactgttgt gaactctagt ctactgtctg tattacacat acttatggca       780
     gaattttagg atacgtgcca aatagatttt gagaactctc aaaaggtttt gttttatcaa       840
     acgtaagaag aaagaagtat tcccgtagga cagtcatgta atgtgtgtgc taagtagaag       900
     agtttttatc gtggatataa gtgattagta aatatcggca agtaagtatt gtgtattttc       960
     ttggtgctcg tatcatacag ttgctgccga taggttcaac aattattcaa aatatcgtag      1020
     gaaacttaac aattcacatt tattgcatag agagtgaacg tttttatcag tctattaaat      1080
     tcagaaaagt acatttattc tttgattttc ctaatgctaa aagttataga gctacaatta      1140
     caagtaaaaa agaaccttaa ccgcgacgtt atcctggtaa aacattaatt gtaatgacaa      1200
     ttagtctcgt cataacctta cttgtgcaca tttgggctta cggaaacgta tataacttaa      1260
     ataaatataa gtatacttca aatatttgca gtttaacgac taaattacaa tatcctattc      1320
     gattccattt gtatttctta cacatcgata ttttgtgaat gagaaaaaat atgagctaaa      1380
     cagaatcgct gttgaatgtg tttatagatt ttcattttag tgattacgat ttgtactttg      1440
     tgtgacttcg cactgaaaat gtttgagctt acgttgatat tagctgcagt atgtactatt      1500
     tgtatgtaag aaatttttac ttttgttgat ttaagtcaaa gctgcatgtc atcgaaatat      1560
     cttgggactc cttatatcga tgttgagccc ttatagaaaa attgtatttt ttaaaaactt      1620
     aaatgatcta taaataattc tattaatcaa cagtttgatg tgtgttttaa cgaaaaaaat      1680
     tgcaaatgct caataaaaat gctttaagaa ataaaatgaa tcaggacaaa atttattgca      1740
     atcactttta attatataac gaaaggtaac atctcgtgcc tatgaaatga aacttaaatg      1800
     ttcataaata gtttgagaaa attcagtata tcatttacat tttttgatcc accgactact      1860
     tcattccaat gatttattga acagctattt tcacgtgatg aaatgagttt atgaacgaag      1920
     ctggtaatta gaaaaactaa gcaagcacaa ctttatttcg atgacatgcg tatagtgagg      1980
     gaaaaataaa tgtaagaatt agataatatt acgataaaga tttttagttg aaactgtgtt      2040
     ctcttaattt gcattcaatt aatattgtta ttaacgtaaa taacatgaaa attgattatt      2100
     aattaacata taccgaagtg agatagtctg taaattagtc ggtatattaa ctttatatga      2160
     tatactgaat gggcgttcac aattgctgtt ttttttacct atatgaaatc actgtctttc      2220
     atttcgtata cgtcaataat tgtagagtaa ctttcaaatt tctcttacaa atagaatgcc      2280
     aagctaccca actaaccaaa aaagtagaca gaaaaaagtt ttaaaaggac gtccccctac      2340
     agcgaagaag ggtactggta aaggaggacg accacgtatt gaaacagaaa aggccagttc      2400
     gagcacctta tataggcgag cctacgaagt gttagattat gtcaaatata atatcgaatt      2460
     gttgaaatta gcagtgaagt tatgccaaat tcatcttgct aaaaatgata ctcatgaaga      2520
     aatgagtaga acagattact atatagaaga gatggaagtt gaagatcata ctgtacagcc      2580
     aagtactgaa attgctgaat acaggcattc tcctaaatcg gctcttgcgt tttactgcga      2640
     acatgatttt agtaagaagt cgtatgtagc tctagtcagg gatttgcgta tcagaaaatg      2700
     taatatttac ccttcttact ctatgataca aaaagagatg aagaattgcc tcgtattacc      2760
     ctatgatgta catacagaag ttgaaattcg cgtttctctc cagaatattt taaataaaac      2820
     agcgcaacaa ctatgttctg cagtagcaac ttcttggagc aaacaggact tacaacactt      2880
     gcagctaact gtgacacttg ggtttgatag ctctgctggt cattgtaacc cacagcaagg      2940
     ctataccgat tcaaatgtaa ttaatcaaga tcctctgcaa tctttgtttg tttctagtat      3000
     gctcattgtt caactacaaa gtagatctaa tggtaagcaa attgactgtt tatcgtttgt      3060
     atcgtttgca cagtgaaaaa tgtgtcataa aaaatttcat gatttaaaga aggccttatt      3120
     tagagtaatt ttagttggga atataaatat ttctacacaa gtagtaaatt ttatataatc      3180
     gataatatct gcgtgaacaa tgcaaaaaat tttatacgag aaaaatttct tgggtcttca      3240
     aaactatact cgtatcttaa tatctgcctt atcactttgt catttgatct cttcgaatat      3300
     atgttttata ctattctaag tgagggcaac gtctaatcat cgggcgtcct taatacatta      3360
     tgatgcttgg tcaataaaaa ccgctgtctc agcacaaaat ttaggaatta tcgtagagat      3420
     tattttggta atataaatac taaattattt tgttacagct aattgcacat ggaagaatcc      3480
     gagcccacag agttatagat tctgtagacc agtacgaatt gcattagaga aggaaacgct      3540
     ggagtctata cttacagagt ataatcgttt aaaccgtgaa atatccacac ttacatcata      3600
     tgcatttcag ttagataatg gacaagaagc agaagtgtca tttaaagttt ttgttacatt      3660
     actagacgga aaatgtgtaa acgcaatcgt aggaaacaaa gctacatgta gatgcaatat      3720
     ttgcttttgc actaattctc aattcgataa agatgtatca accgattttc atcccattga      3780
     tgaatcattt atggagcttg gccttggtct tctacatgct gaaataaaag cttttgaaaa      3840
     tcttacccac atatcataca gacttccttt gcaaacatgg acgattaatg ctaatattaa      3900
     aggtgaaata taaattgaaa aactcttctt ttcgctagtc cgtagcacat gcagtgactg      3960
     tagttaatgt gtatctttcg tgtgtaacta aataaaggat acgagatatt actttctaat      4020
     gaaaattgca agacgtaatt gtaataatta ggccacgtta tcgcactgga aatttaaaaa      4080
     aaaaatttta cttttttcag accttacaca gcagggttta ttactttttt taagtgacgc      4140
     aatacaattt ttaattttaa ataaaaatcc aaacaattgg acgagtttgt cactcagttg      4200
     catttgatgt gtccttaagg ttgtaccttc caagtttgac caatcgttta aatgtaaata      4260
     actatcattt actcatagat attcatgtaa aaacacacat accatcgttt tgagtaattg      4320
     agttagcatg cacatacgat tgggttttcc acatgaagtc cgaaattgat tgctattgga      4380
     tattttaatg aataactgtg ttagaaaact caaatttaca atgtttcttc agaaatataa      4440
     ttgtatatcc aaagtattct taaatataaa tattattgat catgaacgaa gttggctttt      4500
     gtcaaatata gctattacgt cttgcaaaaa agttcatatt tttaattgtt aagaaaaatg      4560
     aagtgtcaaa tcagtaacct aactatatta gtttgcatag taatatccat attatttcag      4620
     aaaaggcaga tgagcgaact caaattgtac gaaatagaat ttacgaaaag ttcaaggttc      4680
     gagttgacca agtccttcaa gggcatggta ccactacaaa cggtaacgtt gctcgaaaat      4740
     gcttcgcgga accagaaaaa tttgctgaag ttcttgaact agatgaaacg ctggtgaaaa      4800
     acatttctct cgtaatatca ttatttaaaa gcaagcacgc actagttctg agcaaaatga      4860
     gtacactgtg tattgaaact tataaaaagt attacgaatg ttatccctgg gcgaaaatga      4920
     gccccacatt acacaaattg cttgctcata gttgtgagat cgcgaaaaag ttccctttac      4980
     ctttagcata tttttccgaa gattgtagtg aaagctggca caagtattat cgcagaaatt      5040
     ggactgcaca cgcacgacaa ataagcagga agcttagaat tctggacgtt tttaataggg      5100
     cagtttacat gacagaccct atcatttcat tagagtacat tgaacaaaga caacggctaa      5160
     aggcgaatca taaaaacgtt caagacttaa gtggattcac gcgatcacag taagtaaaag      5220
     cacttatata gtctctacaa agttcttttt aaacttgtga atttcagtgt aatattgaat      5280
     aaaattagag acagtcaaca agtaatagat ttcaaaaatc aatacaggca taatattata      5340
     tattaccatt gttaaaaaat cataatatcc tatttctcca tgtaaatgta gtaattacat      5400
     cggaaactct aattacagtt gtattatacg ctgggggaaa aaaaagatta cataatgaat      5460
     ttgtcattct atgtgcagta tcttaaactt gttatattca ctaagcaaaa caattatttt      5520
     attttttaat caaaagttag attcaattgt actaattatt gaatttaaac taaacaattt      5580
     tatcttgttt caaaccgaga atacagttgc aattcattta ccggcttctt aaaaatactt      5640
     ttaaacattt gtgtacatca tcacgaaact ttaatgatat cttacatttg attaaaatta      5700
     cgtcttgaat tgtagagtag taaattatat gatactttct tgatcacttt aattacaaaa      5760
     gcgatgaata cttttcaata aaatgttgcc acttagtaca tcttatatgg ctattatttt      5820
     gaatacctaa tgtaaagtaa aaaatggact gttttgtctc tttactatgg tattaaagca      5880
     atattttaga atttagtatt actctgttta atgaatttta atacccgtaa tggtgagata      5940
     gactgattat tatgcgaatg taatcaaaat aaataatata attaattttt gcaaggttat      6000
     tggagaatga aattatgtta gaaataaacg aaaatagtca tgaaaagtat tttcatgtaa      6060
     aagtattatt catgataatt attaaccgat gtcaatcatg aaattataaa catttacagg      6120
     aagaacgacg atgatataag tgacacggaa acggaatccg attaagagtg aaacaagcac      6180
     gtaataattt aaaagcatcc atgacatcat cgcaattcat cgtttctcta ttattatatg      6240
     attataatta tcaaaggcat caatttgatc aagctacttt atattcctga gaaatctaat      6300
     attaggagaa tgaataaaga gaacaagaaa gaattttcaa aacacgaaaa aaatttccaa      6360
     ataccacatg agtatatagg ttaatttttt tttatatcat tgagtagtta tttatcactc      6420
     ccagccacaa cacttacact tctgaaaact ttctgaagaa aataattttt tttttggaat      6480
     tatgcttgat tttgacaaaa aagtcacttt ttagacgcaa ttttgatacc ttatttaaaa      6540
     aaatgaagaa tatatgtaaa ataaatatga aggtataata ccagctcttt aaaacttatt      6600
     ttccaacaga aaaaaaaaaa aaaaaattaa attgaaaaat ttctgaaata atccaaaatt      6660
     tgtaggttag gatctcattt tttacatttc tccttaattt tctgttattc cttgtcatca      6720
     tacctataag atccaaaaac tttcatgaaa aaatatttct tctaaggaag tttacatagt      6780
     tttgaaacga aaaatatcag tttatcccac tgtg                                  6814
//
ID   Transib-1_CQ repbase;    DNA;    INV; 3362 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Transib DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3362
RA   Kojima K.K. and Jurka J.;
RT   "Transib DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 631-631 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99%
CC   identity. 5bp TSDs. 11bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           757..2847
FT                 /product="Transib-1_CQ_1p"
FT                 /note="transposase."
FT                 /translation="MDNNTVVSMFDVTKHHSENVKTAFEYICKNYNIAEPS
FT                 HDLLREKLRMLFCSFKTRYTKAHRRSSFFESSNNNWLHSEFDLEGFIVENV
FT                 NLTSGSTKKRGREPKEFDAKSDRSVRRTIDNESLDPKVDSIHKALLMARRT
FT                 AFKRHDVNVVKVIGHLLKNQDYFSKMYVQLTNDRQLKTPEEAFALIIEAHL
FT                 TKAQYEIFHFDCPSRYPPYNVIAGAKKTCAPPVEFIEGSASKIKVELQALM
FT                 NHTASRILQVIRQDVTDYLDSHDLDCAELVLLSSWGMDGSTGYSQFNHSLP
FT                 EGSIDDSDVFAATLTPIQLYVHSDGKHILWHNPTPQSIRFCRPIMLQFIKE
FT                 SREIILKTKHDLEKEMCELTPLKIDLPGDKFVLIDFNFVLSMIDGKVLTYI
FT                 TGSSSMQNCPICGATPNIMNSIEKLEEGFTANEDTLYYGISPLHAWIRFFE
FT                 CLLHISYRMEIKQWRVTKDLKLNYLKRKKMVLEALHKAFGFRADQPRSGGK
FT                 GTSTTGNICRKAFSNPELLSSVLGIEKELIERFRNILIAINCQEAINPEIF
FT                 DEYCKDTYRFYLEHYEWYKIPATLHKVLAHAGDIILHSPAPLGVLAEEAAE
FT                 CQHKHLKLFRSHFARKRSREANLMDVFLRALHESDPYLSSMWVSKKHTKKV
FT                 CSSYPTVVRSFMVFEDSESDTSSNIMNDLMDAVDEVDEDFEEDVVDED"
XX
SQ   Sequence 3362 BP; 1144 A; 513 C; 647 G; 1058 T; 0 other;
     cactatgggg tttcaggcgg ccataaatcg aaaaaccgac atactctaat tatttttttg        60
     gtattttttt tcgaaaataa acattctaac taagaaaaat ccggagtttg aaagttgtag       120
     gttcaaaatt cactgaattg cagaccttca aaggcaaaaa tggtaagaaa aaacatgttt       180
     tttgacaaaa aaatgattat ttttcatagt tgtactgtgt agctgtttat gtattttttc       240
     ctgcatcatt atatatattc agaaaggtaa ttgattcaac ttttcaataa aattttacaa       300
     aacacacttt tacaggctaa aaaaaataat aaaaatcaaa aaagatggat ttttgttcaa       360
     aatttagttt tttttcaact ttgttaatgg agtacttttt ttgtgtgcat ttgtgcgatc       420
     tgaaaatttc ccagcttaaa atttgaacca tgtcctaact tgtctccaaa tttcaaagtg       480
     cacttatgtg cactttttga gttatgccat tttgaacatt ttgattcatg caagaaaatt       540
     aatgatttcg cgcatacgct tggttaaaat cacaatattt acctgcggag gcagaaatga       600
     cgtacctgct atgtatgttt tggaattgat ttgatattca tgactttgtt ggtacttagg       660
     tacgtttaat aaaattagaa atacctatgc taagtattta acagcaacaa ttcttcgaat       720
     attcatatca gttagttgtt gtgttctttt aaaaatatgg ataataatac cgtagtgtcc       780
     atgttcgatg taacgaagca ccattctgaa aatgtgaaaa ctgctttcga gtatatttgt       840
     aagaattaca acattgcaga accatcacat gatctactca gggaaaaact acgcatgttg       900
     ttctgtagct ttaaaacgag gtatacaaaa gcccatagaa gaagttcatt ttttgagtca       960
     tctaacaaca attggttaca tagtgagttt gatttagaag gatttatcgt ggaaaacgtg      1020
     aatttaacaa gtggatcaac gaaaaaacgt ggacgagaac ccaaagagtt tgatgcgaag      1080
     agtgatagga gtgttcgacg taccattgat aatgaatcat tggatcctaa agtggattca      1140
     attcataagg ctttgttaat ggcaaggaga acagcattta aaaggcacga tgtgaatgta      1200
     gttaaagtga taggacacct cctgaaaaat caggattact tttctaaaat gtacgttcag      1260
     ttaactaacg accgacagtt aaaaacgccg gaagaagcat ttgcgctgat tatcgaagca      1320
     caccttacta aggctcagta tgaaatattt cattttgatt gcccttcgag atatccgcct      1380
     tacaatgtta tagcaggtgc caaaaaaaca tgcgcacctc ctgttgaatt catcgaaggg      1440
     tcagcctcga agataaaagt ggaattgcaa gctctgatga atcatacggc atctagaata      1500
     cttcaagtaa taaggcagga tgtgacagat tatctagata gtcatgattt agattgcgcc      1560
     gaattggttt tattgagtag ttggggaatg gatggatcca ctggatattc tcaatttaat      1620
     cattcattgc cagaaggtag cattgatgat tccgatgtct ttgctgcaac gttaactccc      1680
     atccaattat acgtgcatag tgatggtaaa catattttat ggcataatcc tacacctcaa      1740
     agcatcagat tttgtcgacc aattatgtta cagtttatta aagaatctag agaaatcatc      1800
     ctgaaaacaa aacatgatct ggaaaaagaa atgtgtgaat tgacaccttt gaaaattgat      1860
     cttccgggtg ataaattcgt gttgatcgat tttaattttg ttttgagtat gatagacgga      1920
     aaagtgctga catatattac tggttcatca tcgatgcaaa attgtcctat atgtggggca      1980
     acacctaata taatgaactc catcgaaaaa ctagaagaag gatttactgc caatgaagac      2040
     acattatact atggaatatc tccacttcat gcttggatac ggtttttcga atgtctgtta      2100
     catatttcat atcggatgga gatcaaacaa tggagggtta cgaaggatct taagctgaat      2160
     tatcttaaac gaaaaaagat ggttctggaa gcattgcaca aggcatttgg atttagagct      2220
     gatcaaccaa gatcaggcgg taaaggtacg agtactaccg gaaacatttg taggaaagca      2280
     ttttctaacc cggaactttt aagcagtgta ttgggcattg aaaaagagtt gatcgagaga      2340
     tttcgtaata ttttgatagc gatcaactgc caagaagcca ttaatcctga aatatttgat      2400
     gaatattgca aagatacata taggttctat ttagaacact acgaatggta taaaattcct      2460
     gcaactctgc ataaagtgct tgctcatgca ggtgatataa ttcttcattc tcctgctcct      2520
     cttggtgttt tggcagaaga agccgctgaa tgtcaacaca aacatttgaa attatttcgt      2580
     tcgcattttg ctagaaaaag atcacgagaa gcaaatttaa tggatgtatt tttaagggca      2640
     ttgcatgagt cggacccata tttaagttca atgtgggtaa gcaaaaaaca taccaagaaa      2700
     gtttgctctt catacccaac agttgttaga agtttcatgg ttttcgagga ttctgaaagt      2760
     gatacaagtt ctaacataat gaatgatctt atggatgctg ttgatgaagt tgacgaagat      2820
     tttgaagaag atgttgtgga cgaagattag atttttgaca gatgaagtgc attgagatat      2880
     atctagtcat gtaatattta ttaagtgttg gtcaataaat ttttaataat caaattaatt      2940
     gcattttcat aaacattcct ttgtttcctc cccttctgtg atggtacaat gttccagaaa      3000
     atcctaaaac atcgtaattt tttttaattt gggtggtgag gggggggggg ggtcaaagag      3060
     aggtagattt tgactcaaga ggaaggggag ggggattgaa agtaaacgaa aactataaca      3120
     aagcataagc cgccattccg tgcatcaaac agacagagca aggatattaa aattcaccat      3180
     ttcaatgcat gtgggctcaa atgtataaaa aaatcgaaaa aaatcgaaaa tttaactttt      3240
     ttttttgaaa aatatcaaat ttcatttgtt tacatgataa taagtacaaa caacacaaaa      3300
     aagtcacaaa aaagtgaaaa aatatttttg gccgctcgct tctatggaaa taccccatag      3360
     tg                                                                     3362
//
ID   Transib-1_DAn repbase;    DNA;    INV; 3015 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3015
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 277-277 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~50-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           456..2666
FT                 /product="Transib-1_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MLNNSRHFILNFNNSFVCGFLRLFRCYNYLDVLEFCH
FT                 ATLLDVWMDSGRHSSALTEFVFGQIDQCTLSDDKRSEINKKIRSFEIFVTS
FT                 NLQKCSRNMRTFREKHSQWLLKSLKIHLENHSEMENLKKGRPKLTYDEGGS
FT                 RLKRKLAGEVALKNENDTQLLIHAASISARKSSEHSVAFLLANCNRSEAQA
FT                 TEAKRKLHTAEPIPLTINEALEFFIDNSLSKQLYKEIRQISKLHNCDIYPN
FT                 YKKVLEAKLQLRPVGITATETFAKVALQDLLNHTASRIVLMQEELFANLET
FT                 VSSLKLIVSYGFDGSSGQSMYKQRFECNEKDTSDQSLFVTTIIPLKLIDDA
FT                 GSIFWNNRTPQSVRFCRPLKMEFAKETKDHILAEKNDLDRQIEHLIPFVLT
FT                 ILEERKITIAFDMHMTLIDGKVLNVLTGTNSCQLCSICGAGPKQFMDTIDQ
FT                 NSFKPKPGHLQYGISPLHAWIRVFELLLKISYRLKFKKWQARLESDKRDMI
FT                 SKKEHIQKRMRQEMGLHVDKPKQNGSGNTNDGNTARKAFSNTKLFASILEL
FT                 DLELINSLHTILVAINCEFAIDPQKFQKFSDKTIRLYTLHYPWYPMSPTLH
FT                 KILIHGSQIIAASVVPVGCLGENASEARNKLYKRDRQMHARRNSRINNLMD
FT                 VFHRSMDSSDPLISSMGIKKRTARHKKQPLPQDVIELLEAPHHIVQSNTKS
FT                 FVNNESFNDLLDDSDDSDDSESNEINPFSFELAVENY"
XX
SQ   Sequence 3015 BP; 1089 A; 480 C; 559 G; 887 T; 0 other;
     caatgcactg tggtcccaaa tcccgatttg gtggcataaa gtcccaaatt tcatggaaga        60
     aaatctgaat ttttttttta tatatttaaa ctagataccc tagatagaaa gtatcaataa       120
     atatttttgt caaaaatgca accttgcaat ttttacagat gtttaaagtc aggtgattga       180
     gcagctgatt tttgtgacaa aattggcggg aaatatttaa taactttgag agcttggcaa       240
     atctaaacca aacaatattt ttctattatt taaaatggat attgaagttg gaggtatgta       300
     aattacgaat aataaacaca atttgtgtgg taatttgttt aacgttatat aattgtactg       360
     ttttgtgttg tccaaggaaa tcaaaaagct gacaaaagtg ttcgtcttct gtagaggaaa       420
     aaaggtgttg tgcgtatttg tgcgttgttt aatgtatgtt aaacaatagt agacacttta       480
     tattaaattt taataatagt ttcgtttgcg gctttttgcg gcttttccga tgctataatt       540
     atttagatgt gcttgaattc tgtcacgcca cgttgctgga cgtgtggatg gacagcgggc       600
     gccactcttc cgcgctgact gaatttgtat ttggtcaaat agatcaatgt acactaagcg       660
     acgacaaaag gagtgaaata aataaaaaaa taagaagttt tgaaattttt gttacgtcaa       720
     acctgcaaaa gtgcagtcgg aatatgcgaa cattcagaga aaagcattca cagtggctat       780
     taaagtctct taaaatacat ttggaaaatc actcggagat ggaaaattta aagaagggaa       840
     gaccaaaact gacttatgat gaaggaggat cgcgccttaa aagaaaactt gctggtgaag       900
     tagcgcttaa gaatgaaaat gatacgcaac ttttgataca cgcagcttca atatcagcaa       960
     ggaaatcaag tgaacatagt gttgcatttt tacttgcaaa ttgtaatagg tctgaagcac      1020
     aggcaactga agctaaaaga aagcttcata cagcagaacc aatacctctt acaataaatg      1080
     aggctttgga atttttcata gacaattcat taagcaaaca attgtacaaa gaaattcgtc      1140
     aaataagcaa actgcataat tgcgacatat accccaacta caaaaaagtt ctggaagcta      1200
     aattacagtt gagacctgtg gggataacag cgacagaaac atttgcaaag gttgctttac      1260
     aggatttatt aaatcatact gcgagccgaa ttgtattgat gcaggaggaa ctatttgcaa      1320
     atttggaaac tgtgtcaagc cttaaattaa ttgtaagtta cggatttgat ggatcatctg      1380
     gacagagtat gtacaaacaa agatttgaat gtaacgaaaa agacacctca gatcagtcgt      1440
     tatttgttac taccattata cctctgaagc ttatagatga tgcaggatcc atattttgga      1500
     ataacagaac tccgcaatct gtaagatttt gtcgccctct aaaaatggaa ttcgcaaaag      1560
     aaacaaaaga tcacattctt gcagagaaaa acgatttgga caggcaaata gaacatttga      1620
     ttcccttcgt attaaccatt ttagaggaaa ggaaaatcac tatcgcattt gatatgcata      1680
     tgacacttat agacggaaaa gttttaaacg ttttaacggg cacgaattcc tgccaattat      1740
     gttcaatttg tggagcaggc ccaaaacaat ttatggatac tattgaccag aattctttta      1800
     agccgaaacc tggacacctt cagtatggaa taagtccact acacgcgtgg atacgtgttt      1860
     ttgaattact cctaaaaata tcttatagat tgaagtttaa aaagtggcaa gcacgactcg      1920
     aaagtgacaa acgcgatatg atttctaaaa aagaacatat acaaaagcga atgcggcaag      1980
     aaatgggatt gcatgtagat aagccgaaac agaatggcag cggaaacacg aacgatggca      2040
     atacagctag aaaggctttt tctaatacaa aattatttgc atccatttta gaacttgact      2100
     tggagctaat taatagtctg catactattc tagtagctat taactgtgaa tttgcaatcg      2160
     atcctcaaaa atttcaaaaa ttctccgata aaactattcg actatacaca ttacattacc      2220
     cgtggtatcc gatgtcacca actctacaca agattttaat acatggatcg caaataatag      2280
     ctgcatcagt agtcccggtt ggctgtcttg gggaaaatgc ttcagaagca cgaaataaat      2340
     tgtacaaacg tgataggcaa atgcatgctc gaagaaattc ccgaattaat aatttgatgg      2400
     atgttttcca cagatctatg gactcatcag atccacttat ttcaagtatg ggtattaaga      2460
     aaaggacagc acgtcataag aaacaaccgc ttccccaaga tgtaatcgaa ctcttagaag      2520
     caccccatca tattgttcaa agcaatacaa agtcatttgt taataacgaa agttttaatg      2580
     atctattaga tgactcagat gactcagatg attctgaatc aaatgaaata aatccatttt      2640
     cgtttgaatt agccgtagaa aactactgaa tacatatcta tatgcttaca cttatatttt      2700
     tagttttgac ttctaacaac agattactat agaataaaat aaacaaaaag caataaaact      2760
     ttattataaa tataaaaaaa agtataaaat aaaagaaaat aataaaaata tgtttaagaa      2820
     aacaaatttt aagaaaacat cacgtatacg tcatgatgtg tatatgggct gttggagtag      2880
     gcgtggtcaa acttacttga aagtttgctt aaatatttag agtggtctat taatgaagtg      2940
     tgccaagttt cagctcgata gatgcaatat tcgattttat gccaccaaat cgggatttgg      3000
     gaccatagtg cagtg                                                       3015
//
ID   Transib-1_DAzt repbase;    DNA;    INV; 2918 BP.
XX
AC   .
XX
DT   15-OCT-2019 (Rel. 25.03, Created)
DT   15-OCT-2019 (Rel. 25.03, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila azteca genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DAzt.
XX
OS   Drosophila azteca
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; affinis subgroup.
XX
RN   [1]
RP   1-2918
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila azteca genome.";
RL   Repbase Reports 20(3), 589-589 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs. 38-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           469..2490
FT                 /product="Transib-1_DAzt_1p"
FT                 /translation="MCLVYCSNHFFCSFLFLLKKNALEVSFTFNNNTLVDI
FT                 WNNNNRNSDAVTAYIMEEINRDNLNKSNIQQIKAKVTNFVYYIKRYLRQYN
FT                 RNLERFKSIHTEWLAKCMEIKIDVEYTAKPSPLKMGRPKVGYAKAGPRLKR
FT                 QMASEVAVQNDCSTALLLHAASASARKSNDNKVVGVLQNVMTEEYVEDPEI
FT                 TNQPGPDRISNIEALAFLFENNFTKQQYINFTQLYKAHGCNICPGYDLIRS
FT                 TKLQCRPLGISITETLAKVSLQDLLNHTAERILTLQNDVLEKMENVTDCTL
FT                 ILSYGFDGSTGQSSYKQKFDSDEPDFLDQSLFVSTVIPIRLIDSLNRVIWL
FT                 NRSPQSVRFCRPLKIEYAKESSAKIICEKENLDMQVAKLEKFKWQTKNISV
FT                 VFKTYMTLIDGKVLNVITGTKSNQCCPICAVNPKRIIEITDFNSETFRPQP
FT                 DSLKYGVSPLHAWIRFMEFVLNISYRMDIKTWHIKGDDKNKMMIRKKEIQQ
FT                 TVWKEMGLHISIPKQNGSGNSKRIFANTKRFASITLFDEVILNNFYCILIA
FT                 ISCEFSISPKKYRQFCKDTFNLYMKTYPWYPMSPTVHKILVHGADIIDFCI
FT                 VPVGCLGESASEARNKHYKMDRRSHARKSCRLNNMADVFNRAMDSSDPLIS
FT                 SYYINKRQTNLKKKTASNRRYKPFR"
XX
SQ   Sequence 2918 BP; 1043 A; 456 C; 508 G; 911 T; 0 other;
     cactatgggc gattttgcat aacgggcggc ataaagtcat aaaattaatg gtgaaatttt        60
     aagaaaatgt ttttatttat gaatagtaaa cacttcaatt agctggaaaa catttttttt       120
     ttttttcggg tggcaattct tttttggtgg caacccttca aaaccagctg agcagctgaa       180
     gctctcaatt atataaattg gcgcgtaaaa ctttctgctg ttgtaagtgc tcaaattatc       240
     atttgtttca tttaaattaa taagtgtaac atggatagca aagctcaagg tatttataat       300
     ctattattta tgataaatgt gcataaatgt tcgtggtgtt tttaatgtcc agtgttattg       360
     ttgattgtat ttttagcaaa aatctaacaa ttttaattgt gtttcgtgga gtattttttg       420
     aaaagtgcat atcaaaacat gcaactaaaa atggcaagtt actaactaat gtgtctagtt       480
     tattgtagta atcatttttt ctgctcgttt ttgttccttt tgaaaaaaaa tgcacttgaa       540
     gtttccttta cgttcaacaa caacacgctt gttgatattt ggaacaacaa caatcgcaat       600
     tctgatgctg tcacagcgta cataatggaa gaaataaata gagataattt gaacaaatca       660
     aacatacagc aaattaaggc aaaagtgact aattttgtat attatataaa acgttacttg       720
     cgccaataca atcgaaatct tgagcgattt aagtcgatac acacagaatg gcttgcaaaa       780
     tgtatggaaa taaaaattga tgtggaatat actgctaagc catcaccatt gaagatgggt       840
     cgtccgaaag ttggatatgc caaagccggg cctagactaa aaagacaaat ggcttcagaa       900
     gttgccgttc agaatgactg ctctactgcc ttacttttgc atgccgcctc tgcatctgcg       960
     cgtaaaagta atgataataa agtggttggc gtactgcaaa atgtaatgac tgaggaatat      1020
     gttgaggatc ccgaaataac aaatcaaccg ggaccagatc gcatctctaa tattgaagca      1080
     ttagcttttt tatttgagaa taatttcaca aagcagcaat atatcaactt tacacaactc      1140
     tacaaggcgc acggctgcaa tatatgtcct gggtacgact taataagatc tacaaagttg      1200
     cagtgcagac ccttaggaat tagtattaca gaaactctgg caaaagtttc tctgcaggat      1260
     ttgctaaacc acacggctga aagaatattg accttacaaa atgatgtttt agagaaaatg      1320
     gaaaatgtaa cggactgcac ccttatttta agctatggat ttgatggatc gacgggtcaa      1380
     agttcgtata aacaaaaatt tgattcagat gagcccgatt tcttagatca atcgctgttc      1440
     gtatcaactg ttataccaat acgtctaatt gattctttaa atcgcgtaat atggttaaat      1500
     agaagcccac agtcagttag gttttgcagg cctttaaaaa ttgaatacgc gaaagaaagc      1560
     tccgcaaaaa tcatatgcga aaaagaaaat ttagatatgc aagtagcaaa attggaaaag      1620
     ttcaaatggc aaactaaaaa tatttctgtg gtttttaaaa catatatgac attaattgat      1680
     ggaaaggtat taaatgttat aactggtaca aaatccaatc aatgttgccc aatctgtgct      1740
     gtaaatccta aaaggattat cgaaatcaca gattttaatt ctgaaacctt tcgacctcag      1800
     ccagactctt taaaatacgg cgtaagtcca ttacatgcat ggattcgatt tatggaattc      1860
     gttttgaaca tatcgtaccg tatggatata aagacctggc acatcaaagg cgatgataaa      1920
     aataaaatga tgataagaaa gaaggaaatt cagcaaacag tatggaaaga aatgggtttg      1980
     catattagca ttccgaaaca gaacggaagt ggtaacagca aacgaatctt tgcaaataca      2040
     aaacggtttg catccattac attgtttgat gaggtcattt taaataactt ttactgtata      2100
     ttaatagcaa tatcgtgtga attctcaatc agcccaaaaa agtaccgaca attttgcaaa      2160
     gacactttta atctatatat gaaaacatat ccgtggtacc caatgtctcc aactgtacat      2220
     aaaatattag ttcacggagc agacattata gatttttgta tagttccagt tggatgttta      2280
     ggtgagagtg catcagaagc tcgtaacaaa cattataaaa tggaccgacg ttctcatgcc      2340
     agaaaaagtt gtagattaaa taatatggct gacgttttta atagagctat ggactcatct      2400
     gatccattaa tatcaagcta ctatataaac aagaggcaaa caaatttgaa aaaaaaaacc      2460
     gcttccaata gacgttataa accttttaga tagtccaaca ttagagctga gttcagataa      2520
     ttttgtaaat gatgaaaaaa caaaatcgga caacgaaacc gatgacaatc atgataattc      2580
     ttttatttta gatgaagaag ataattaact ttttgtttta ttaagttcag aatattgttt      2640
     aaataaatct taagaaaatg ctaaaatgtt attttttctt tttttttgct ttgctttgtt      2700
     ttaatttaat ttttttccat tataattata ataaaaattg aaatttttgt agcagtgccg      2760
     ggcttataaa ggggcggaaa ataaaggcgt ggcccaattg actacaaaat aaaatccgaa      2820
     atcaaaataa aatattagta acacttataa aaataaataa gcctcctagc tcttttttta      2880
     gactttatgc cgccaaaatc aacaaatcgc ccatagtg                              2918
//
ID   Transib-1_DBi repbase;    DNA;    INV; 2542 BP.
XX
AC   .
XX
DT   13-DEC-2011 (Rel. 17.06, Created)
DT   13-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2542
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 743-743 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. Fragment.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2542 BP; 866 A; 418 C; 469 G; 787 T; 2 other;
     ccgtcagagg ccaaaaatca aaaaatgtga tgacaatttt ttaagcaaaa tgtatcgaaa        60
     ttgtctctta aaagtccaaa cttctctttg gcataccgga ttttactgga aatctaacgg       120
     tactttctaa aaatagattt gcaatcgtga acacgtgttc attttggcaa cgcagctgcg       180
     ctttggaagt tatttctctc tttcaattcg ccctttaaag tgatcagacg tacgctgcag       240
     tgctccgatt tgaataattt aacatgaatt atgaaattga aggtatttac tttaaattga       300
     gatattaata attaactttc ctgaaaagtt ttttcgtaaa actaatttta tcgaataacc       360
     cttttttgtg tattttttga aagtatattt tatgtttatt aaacttttag ttatgttcca       420
     agaaaaccca gaacttggta tgtatgtttt tgtgatcgtc ttattttagg ttgctaaata       480
     ttttaaaatt agctgcagaa acttgcagat gtgtgtttac tactgaaatt actaaagcag       540
     ttaaaggtga gtctttgctt attgtgctgt tgcgcttttg cctgttgctt tgtctttctt       600
     caaatgaaga aattgatttc cgatgtgcaa gcggatattg aaaacaacgg ctacattatt       660
     ccagagttga gcgaagtatc caataaaatt gagaacctct gcaaaacaat tgtaactttt       720
     tggaaaaatt acaaacggaa aaaatctgca gttattaaat atcaatctgg atggcttagt       780
     aaaaaagaaa aaaaccccct gcaaatcaaa tcaaatagag gaaagtgctc atcggggccg       840
     tcctaaactt gattttgagg aggcttcaga gagaacaaag cgacgacgtg taggtcagct       900
     cattaaaata gatgaatccg ctgtttcttc tctacgcaat gatgatcgaa atcaaaattt       960
     cctgccggca gatcccatgg aagttatttc gcttttaatg gagacctcca tgacgaagca      1020
     ccaatatttg ctgataagaa actttgtaaa tagcaaaata tcctttgaat tttttcccag      1080
     ttaccaaaga gtactaagtc ttaaaaaaat aagataccct gatggtattt atatagacga      1140
     atctcgtgcg gaagtcgaac tacaaagctt actagacaat acggcatcta gtataataga      1200
     gcttcaaaac aacatcattg aaactatgcc tgaaaatata gtttaattgg aaatkgggct      1260
     tcgatggaag tacagggcat agcgagtata agcaaaagtt ttcaaacggt gatttggacg      1320
     acagaagctt atttgtaaca tcctacgtac ctctccaact ggttactcaa atagataaca      1380
     caataatttg gaaaaacccc cggccatcat cgactcgtta ctgtcgacca ataagatttc      1440
     aatttaagaa agagaccgcg aaagtgtcga aagacgaagc agaatatttt gacgcaaaaa      1500
     ttaaagaatt aaagccaaag gaattaagcg tctctaataa aaaagttgtt attagcatac      1560
     ttgcacttac aatggttgat ggaaaggtgt gcaacgcaat cagcgaatca tcctcggcaa      1620
     cgtgttatat atgtggagca aagccaacag aaatgaacaa tatacaaaaa tgtttgagta      1680
     aagaagttcg cccaagattt tacgaatttg gcttatctcc actacattct tatatacgct      1740
     tctttgaata ctttttacat atttcatata agctagaggt caaaatgtgg caagtacgcg      1800
     atgaagaaaa gaagatgcaa gtattgaaca ggaagaaaca cattcaggag gaatttcgcg      1860
     aaaaaatggg aatactagtg gacaaaccta gagatggagg tagaggatct caaacgacgg      1920
     aaatatcgca aggaatacta tttaccggct accgtccata aagtcttaat tcatggttca      1980
     gctgtaatag agtatgcact agtgtcgata ggagagcttt cagaggaagc agcagagtcc      2040
     aataacaagg aactaaaaaa atgtagactt caacacagtc ggaaagtgtc tcgtacttta      2100
     acaaacacag atgtcatgaa ctatttatta ttgcgttcag atccattttt aacaggacag      2160
     agacaacttc ctaaaaaaga taggtcgagt ttgcttacat ctgtctacga attacttgat      2220
     gatgctttat aatttttgtt tcattaatat tttgtttgtt gatttttatt ttagtttttt      2280
     aagaatatgt ataactacga aaaatatctt ccataccaaa atcgtaataa attagattaa      2340
     acaaatatgt ttttataatt gggtatcgat tgttcctatg ggagctatag gatatagccg      2400
     atcgatatgt ccgattttgg ttgctatatg tttagacaaa tttgctaaat tattgttata      2460
     aatttcagca cgttatgacc attattagta tttttggccg ctcttccata caagcggatc      2520
     cactgtgcak tggatccatc gg                                               2542
//
ID   Transib-1_DBp repbase;    DNA;    INV; 2103 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila bipectinata genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2103
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 600-600 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(3..581,554..1867)
FT                 /product="Transib-1_DBp_1p"
FT                 /note="THAP and transposase."
FT                 /translation="NIWCSKKGTHAEKLRQVXADVQQNLXNNGFXDELNAF
FT                 IQPIKYICKKIDDFWKRYKRKKSSILQYESDWLTKTESILLKXAKNVPHEN
FT                 ALSASRGRKKLNXMESSTRTKRRRIAHLVXIDETAVSALRNENQAQNVLPA
FT                 DPTEVISLLMETGMTKHQYLLIRNFVNSKILLDFFPSYQXILSSKKVDIRT
FT                 KYLKGRYPDXISVDESYAEVELQSLLNNTASSILELQSNVIETIADDSVSN
FT                 LLLIGKWGFDGSTGHSEYKQTFSNNDVDDKSLFVTSYVPLQLISKTDQKVI
FT                 WKNPRPSSTRYCRPIRFQFKKETTEVSKSEEKYFREKIKFLIPTELCVQKR
FT                 KIFVEHSLQLTMVDGKICNALSESHSTKCYICEAKPTEMNNLNECLDKKVS
FT                 TKYFEFGLSPLHAKIRFFEYFLHLSYKSVIKMWQARGPQQKQKVLERKREV
FT                 QRDFRNKMGLIVDQPRDGGKGTSNDGNVARKFFSNPRLSAEITGLNENLIH
FT                 RCSTLLQALASGHKINVHKFNEYALDTAKGLIKEYPWYYLPATVHKVLIHG
FT                 SAIIEHAMVSIGELSEEAAEANNKEIKKCRLNHTRKMSRILTNTDILNYLL
FT                 LRSDPYITGQRNIEKKDNLKLFPSVHSLLEETS"
XX
SQ   Sequence 2103 BP; 725 A; 372 C; 391 G; 603 T; 12 other;
     ttaatatatg gtgctccaaa aaaggcacac acgctgaaaa attacgacaa gtawtggctg        60
     atgtccaaca aaatttgmta aacaacggct ttmsagatga actaaatgcg tttattcaac       120
     caattaagta catttgcaaa aaaattgatg atttttggaa gcgttataaa cgcaagaaat       180
     cttctatttt acaatatgag tcwgattggc tcactaaaac ggagtcaatt ttattgaaaa       240
     mtgcaaaaaa tgtaccccat gaaaatgcgt taagtgcttc acgcggacgt aaaaaactaa       300
     attwtatgga gtcttcaacg aggactaagc gtcggcgtat agctcatctg gtcgawattg       360
     atgagaccgc tgtctctgca ttacgcaacg aaaaccaagc ccaaaatgta ttgccagcgg       420
     atcccacaga agtcatttct cttttaatgg agaccggaat gaccaaacac caatatttgt       480
     tgattcggaa ttttgtaaac agcaaaatat tattagattt ttttcccagc tatcaawgma       540
     ttttaagctc taaaaaggta gatatccgga cmaaatatct gtagacgaat catacgcaga       600
     agtagaactt caaagcttgt taaataacac agcctcgagt atacttgagc ttcaatctaa       660
     tgttattgaa acaattgcag atgattctgt ttctaatctg ttattaattg gaaaatgggg       720
     gttcgatgga agtacgggcc atagcgagta caagcaaacg ttttccaata atgatgtaga       780
     cgacaaaagt ttattcgtta catcttacgt gcctcttcaa cttatttcaa aaactgatca       840
     aaaagtaatt tggaaaaacc ctcggccttc gtcaactcgt tattgcagac ctattcgatt       900
     ccagtttaaa aaagagacga ccgaagtatc aaaatcagag gagaaatact ttagggagaa       960
     aataaaattt ctaataccta cagaactatg tgtccaaaag agaaaaatat tcgttgagca      1020
     tagcttacaa ttaactatgg tagatggaaa aatttgtaac gctttaagtg aatcgcactc      1080
     cactaaatgt tatatttgcg aagccaagcc aacggagatg aacaatttga atgaatgttt      1140
     ggacaaaaag gtatcaacaa aatatttcga gtttggctta tctccactgc atgcaaaaat      1200
     aagattcttt gaatactttc ttcacctttc ttataagtca gtcataaaaa tgtggcaggc      1260
     cagaggaccc caacaaaagc aaaaagtttt agaaagaaag agagaagttc aacgggattt      1320
     tcgaaataaa atgggcttaa tagtggacca gcctagagat ggtggcaaag gaacatccaa      1380
     cgatggcaat gtagcgagaa aatttttttc gaatcctcgg ttgtctgcag aaattacagg      1440
     ccttaatgaa aacttgattc atcgttgttc caccttactg caagctttgg catcgggaca      1500
     caaaatcaac gtacacaaat ttaatgaata tgccctcgat actgccaaag ggttaatcaa      1560
     ggagtatccc tggtactatt tgcctgcgac ggttcacaag gtgcttattc acggatctgc      1620
     tattatagag catgcaatgg tttcaattgg agagctctca gaggaagctg cagaggcgaa      1680
     caacaaagaa ataaagaaat gcagactgaa tcatacccgc aaaatgtcwc gaatacttac      1740
     aaatacagac atattgaatt atttgctttt acggtctgac ccatatatta ctgggcagag      1800
     aaatattgaa aaaaaggaca atttaaaatt atttccctca gttcatagct tgcttgagga      1860
     gacatcctaa aatttttgta taattttgaa gttacaacca ttgtaaattt tgtttagtac      1920
     ttaaatgact cataaattgt tattgtttaa ttatttgtta aattttattg tttggggctc      1980
     agtggttggc ggatttattc aactacaaac actatttacg aagcttggta aaactttcag      2040
     ccctcttatg ccattaaagc atttttggcc gcgcttccat acaagcggaa ccactgtgca      2100
     ttg                                                                    2103
//
ID   Transib-1_DEl repbase;    DNA;    INV; 1484 BP.
XX
AC   .
XX
DT   18-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1484
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 424-424 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. It is similar to Transib5.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1484 BP; 456 A; 225 C; 257 G; 546 T; 0 other;
     gcacagtgca cagtggttcc gtcagaggcc aaaaatcaaa aaattttatg acatattttt        60
     taagcaaaat gtatcaaaat tgtctcttaa aagtccaaac ttctctttgg cataccggat       120
     tttactagaa atctaacggt actttctaaa aatagatttg caatcgtgaa cacgtgttca       180
     ttttggcaac gcagctgcgc tttggaagtt atttctctct ttcaattcgc cctttaaagt       240
     gatcagacgt acgctgcagt gctccgattt gaataattta acatgaatta tgaaattgaa       300
     ggtatttact ttaaattgag atattaataa ttaactttcc tgaaaaagtt ttttcgtaaa       360
     actaatttca tcgaataacc cttttttgtg tattttttta aagtatattt tatgtttagt       420
     tagactttta gttatgttcc aagaaaaccc agaacttggt ttgtatgttt ttgtgatcgt       480
     cttattttag gttactaaat attttaaaat tagctgccga aatttgccga tgtgtgtttt       540
     ctactaatat tactaaagca gttaaaggtg agtctttgct tattgtgctg ttgcgctttt       600
     gcgctgttgc tttgtcttcg tctttagtgg tttgtgtttt tgcaaaaata ttaatttgta       660
     aattattatt taaattttga ttttggattt tgataggtgc atcgcaaaaa tgtgtttttc       720
     cacgtctgca tatttttaat atgtggtgca caggtaatgg aaccaacgcc gaaaaaatga       780
     ggaaattgat ttccgatgtg caagcggata ttgaaaacaa cggctacatt attccagagt       840
     tgagcgaaat atccaataaa attgagaacc tctgcaaaac aatatccatg gtagtattta       900
     ccggctaccg tccataaggt cttaattcat ggtttagctg taatagagta tgcattagtg       960
     tcgataggag agctttcaga ggaagcagca gagtccaata acaaggaact aaaaaaatgt      1020
     agacttcaac acagtcggaa agtatctcgt actttaacaa acacagatgt catgaactat      1080
     ttattattgc gttcagatcc atttttaaca ggacagagac aacttcctaa aaaagatagg      1140
     tcgagtttgc ttacatctgt ctacgaatta cttgacgatg ctttataatt tttgtttcat      1200
     ttatattttg tttgttgatt tttattttag ttttttaaga atatgtataa ctacgaaaaa      1260
     tatcttccat accaaaatcg taataaatta gattaaacaa atatgttttt ataattcggt      1320
     atcgattgtt cctatgggag ctataggata tagccgatcg ataagtccga tttttgttgc      1380
     tatatgttta gacaaatttg ctaaattatt gttataaatt tcagcacgtt atgaccatta      1440
     ttagtatttt tggccgctct tccatacaag cggatccact gtgc                       1484
//
ID   Transib-1_DEu repbase;    DNA;    INV; 2331 BP.
XX
AC   .
XX
DT   01-JUN-2012 (Rel. 17.06, Created)
DT   01-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila eugracilis: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DEu.
XX
OS   Drosophila eugracilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; eugracilis subgroup.
XX
RN   [1]
RP   1-2331
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila eugracilis genome.";
RL   Repbase Reports 12(6), 758-758 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 43-bp TIRs. The consensus is ~96%
CC   identical to that of Transib-5_DBi.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2331 BP; 800 A; 361 C; 438 G; 732 T; 0 other;
     ccattgcaca ttgggatgaa atgcctttat tttggccaaa acctaaaaag ttcatgttaa        60
     tatatcaata atgttacaat tatttcaagc ttagaaatgt ccctagacat cgaaaatatt       120
     taatttgaat tttattgcgc agccctcgtc ttgcaccagc tgtttaaagt cagctgttct       180
     tgccacgtgg tgcgtgcaag cttgctgatt agtgaagttc ctaaattttg gcgttctcgt       240
     atttttaaac agtttgacca attaaaatac cttaaaatgg aaaatgtttc gcatggtatg       300
     tagaaaatat ttgtataagt gtttaattat atgtgctttt gtgttgtcat gtttttaatg       360
     taatacgtaa acagtatttt gttgattcta accttaaaat atttgtgttt cgtggagcat       420
     atctagcaag atacaacagg attcaaataa caacttatgt ggtagtatga gttattatat       480
     gtatattcag atagcattta attaatttgc gggaatttgc gggggggtta aatatttcaa       540
     tagatgcaag caaggttgct attcgtcgag gtgacttgct agaagtttgg ctggataaaa       600
     atcgcaatgt caacgctact tttgactggg tttgcgtcga agtaattcca aaatttccgg       660
     gaaacgattt ggaggcgatt aaaaacaaaa taaaaacctt tattgttcaa gttaagagac       720
     tgctgaccaa agcacaccga aatattcgtc gtttcaaaga agaacaatgc tagctggctt       780
     gcatcggagc taatatttta ttcaaaagat gattgttatc gtaatcttgg tggacgacct       840
     cgggtctctt atgacgaagg aagtttacgg cataaaagaa gatttgcttc cgaacttgca       900
     aaggaaaatt caacacttct acttgttgaa gcagctgcta tgtctgctaa gaaggcaaaa       960
     aatacggata tttctcacat tttaaatacg acaataaata gttctgatag ttcaaaatta      1020
     aggcaacaac tttcattgaa agagcctata ccattatcac ctgatgaggc cttagcattt      1080
     attatagaaa actcgttttc caagcagcaa tatattaaca tacgcttaaa gagtatcgaa      1140
     aaaaactgca atatatatcc aagctacgaa aaggtgagag aagctaagga aaagtgaggt      1200
     taacagtcaa aagttcaagc ctaaaccaaa ttaatatcag tacggagtta gtcctctcca      1260
     cgcatggatt aggtttttgg aattcgttct caacatctca tatcgtgtta gtattcaaaa      1320
     gtggcgaatt agtacggact ctgagaaaga aataatgatg gtacgcaaga aggacattga      1380
     gcgaaagctt tggtctgaaa tggggttaca tattaacaaa ccaagtcaga atggttctgg      1440
     aaattcgaac gatggcaata cggcacgaag agcattttcg gatgttaaat tatttgcctc      1500
     aatattacaa ctggatgagg agcttttaaa caaactacat atcattttaa tagttttatc      1560
     atgcgaatat gacgtttgtt taaataagtt taagaaattt tgtgaagaaa cgctgcgttt      1620
     gcgtttaatt aaatatccgt ggtatccaat gaccgctacg gtccacaaaa ttttagttca      1680
     tggtccagaa ataattaaat catctgtact tcctgttggt tgcttaggcg aaaacgcatc      1740
     tgaggctcgc aacaaatatt acaagcgcga taggattttg catgccagga aaaatagcag      1800
     agtgaacaat ttaaccgacg tatttcaccg agctttggat tcttctgatc cttacttatc      1860
     aagcatcgct caaaaaaaga gttcaaaatc acactcattg ccaagtgaag ttattgcact      1920
     tttagtttct ccaaaaccgg aagatgcagc ccaagtatat agtgttgaag acgagattaa      1980
     aagtatacca tattttgatt ttgatttaga agaagaacgt ttatattaat acaagtttat      2040
     gtacttattt ttaagttttc gttaattaag ctatattata atatgcaaaa atattaaaat      2100
     ataaaaattt tctaacaatt gtggataaaa aaaatgaaga gtataattaa tatgaatttt      2160
     ataaatacag cagttctatt atgtgggcgg caaggaaggc atggttgtag tgtaaaaaaa      2220
     aatccgaaat tcacaaataa tataagcagc aaattctcca agtttcaact ttctagcttt      2280
     aaaattacgg ttatggccaa aaaaaaggca tttcatccca atgtgcaatg g               2331
//
ID   Transib-1_DF repbase;    DNA;    INV; 3031 BP.
XX
AC   .
XX
DT   28-DEC-2011 (Rel. 17.06, Created)
DT   28-DEC-2011 (Rel. 17.06, Last updated, Version -1)
XX
DE   Transib-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-3031
RA   Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 799-799 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           739..1674
FT                 /product="Transib-1_DF_1p"
FT                 /translation="MRTFKNKHSEWLSKSLKIVLDNQADIPNLKKGRPKLA
FT                 YEEGGTRLKRKLASDVAVTNDNDTKLLIHAATMSARKXNENNTAFLLQNSC
FT                 TSERQATEAKRKILAAEAIPLTINDALEFLLENSLSKQLYNEIRHMSKIHN
FT                 CDIYPNYHKVQEAKLQLRPVGITVTETVAKVALQNLLNHTASRILLLQEEI
FT                 FVNLESVSSVKLIASYGFDGSSGQSMYKKRFESNETDTSDQSLFVTTVIPL
FT                 KLVDEKGTIFWNNGSPQSVRFCRPLKMEFAKETIDHILKEKNDLDGQIQNL
FT                 TPCEITILDEKKSPSRMSCT"
FT   CDS           1674..2651
FT                 /product="Transib-1_DF_2p"
FT                 /translation="MTLIDGKVLNVVTGTNSCQLCSICGAGPKQFMNSVDV
FT                 KSFPPKPGHLQYGVSPLHAWIRVFELLLKISYRMQFKKWQARNESDKLVML
FT                 SKKKNVQKRMWQEMGLHVDKPKQNGSGNTNDGNTARKAFSNTNLFASILDV
FT                 DLELINSLHTILIAINCEFAIDPQKFQKFSEKTIKLYMLNYPWYPMSPTLH
FT                 KILIHGSQIIAESVVPVGCLGENASEARNKFYKRDRRMHARQNSRINNMMD
FT                 VFHRSMDSSDPFISSISIKKRAARHKKQPLPQDVIELFAAPQNDIPSITES
FT                 FPNNSSFNDISDDSEDSDANEINPFSFELAVEND"
XX
SQ   Sequence 3031 BP; 1091 A; 490 C; 535 G; 911 T; 4 other;
     gcacagtagg ccggattgcc aaataagcgg cataaaatcg aaaattttat tgaagcaaat        60
     cttaattttt atttaacttt ttaatattaa attgcctgta tagaaagtat taaaaagtat       120
     ttttagttca aatgcaacct tgcaattttt attgagcttc aaagtcaagt gattgaacag       180
     ctgatttgtg tgattaattt ggcgggaaac tctttttgac tttgtgctct tggcaatcac       240
     aaacgagaaa agattttgac attatttaaa atggatttta aacttcgagg taagcaaatt       300
     gagttttatg aaagcatttt gtgtaaaatt attttatgtg tataatatgt gtattgtttt       360
     gtgttgtcca aagcgaaaaa aacctaacct atatgttcgt cttctgtgga gaaaaaaaag       420
     tcttctgcat atttctgcaa tgtgtaatgt atgtttaaca aaagtagaaa ctgtttagta       480
     aaatataata acaatccgat ttgcggcttt ttgcggcttt tccgataatt acattttcta       540
     gatgtgcatg agttctgtca tgcaackttg ctagacgtat ggattgacag cgctcgcgac       600
     tctaccgcgc ttgctgaatg gatatttggc cagataaatg agggtaagct gactgtcgac       660
     caaaagggcg aacttcacaa aaaaattaaa agctttgaaa tttatataaa atcaaatcta       720
     caaaagtgta gccgtaatat gcgaacattc aagaataaac attcagagtg gctatcaaag       780
     tctttaaaaa tagttctgga taaccaagcg gatattccaa acttaaaaaa gggaagacca       840
     aagctagctt atgaggaagg aggaacgcgc cttaaaagaa aacttgctag tgatgtkgca       900
     gttacaaatg acaatgatac caaacttttg attcacgcag ccacaatgtc agccagaaaa       960
     wcgaatgaaa acaatactgc atttctactt caaaattctt gtacgtcaga aagacaggca      1020
     actgaagcaa aaagaaagat tctagcagct gaagcaatac ctctcacaat aaatgatgca      1080
     ttggaatttt tgctagaaaa ttcattaagc aaacaattat acaatgaaat tcgtcatatg      1140
     agtaaaatac ataattgcga tatataccca aactaccaca aagttcagga agcaaaatta      1200
     caattgaggc ctgtgggaat aacagtgaca gaaacagttg caaaagttgc tttacaaaat      1260
     ttattaaatc atactgctag ccgaatttta ttattacagg aagaaatatt cgttaattta      1320
     gaaagtgtgt ccagcgttaa attaattgcg agttacggtt ttgatggatc gtctggacaa      1380
     agtatgtata agaaaagatt tgaaagtaac gaaacagaca catcagatca gtctttattt      1440
     gttacaaccg tcataccctt gaagcttgta gatgaaaaag gaacaatttt ttggaataat      1500
     ggatccccgc aatctgtaag attttgtcgc cctctcaaaa tggaattcgc caaggaaaca      1560
     attgatcaca ttttgaagga aaaaaacgat ttggatggac aaatacaaaa tttgactcct      1620
     tgtgaaataa cgattttaga tgaaaaaaaa tcaccgtctc gtatgagttg tacatgacac      1680
     ttatagacgg gaaagtttta aacgttgtga cgggaactaa ctcctgtcaa ttatgttcga      1740
     tctgtggtgc aggcccaaaa caatttatga attcagttga tgtaaaatct ttccctccga      1800
     aacctggaca ccttcagtat ggggtaagtc cactacatgc gtggatacgt gtttttgaat      1860
     tacttcttaa aatatcctat agaatgcagt ttaaaaaatg gcaagcaaga aacgaaagtg      1920
     acaaactcgt tatgctttct aaaaagaaaa atgtgcaaaa gagaatgtgg caagaaatgg      1980
     gattgcatgt agataagccg aaacagaatg gaagcggaaa cacaaatgat ggcaatacag      2040
     ccagaaaggc tttttctaat acaaacttat tcgcatcaat tttagatgtg gacttggaat      2100
     taattaacag tctgcatact attctaatag ctattaactg tgaatttgca atcgatcctc      2160
     aaaaatttca aaaattctca gaaaaaacca ttaagctata catgttgaat tacccatggt      2220
     atccgatgtc accaacttta cacaaaattt taattcatgg atcccaaata atagcagaat      2280
     cagtagtgcc agtaggctgt cttggagaaa acgcgtcaga agcgcgaaat aaattctaca      2340
     agcgtgatag gcgaatgcat gctcgacaga actctcgaat aaataatatg atggatgtgt      2400
     tccacagatc tatggactca tcagatccct ttatctcaag tatttcaatt aaaaaaaggg      2460
     cagctcgaca taaaaaacaa ccccttccgc aagacgtaat tgaactcttt gcagcacccc      2520
     aaaatgatat tcctagtatt acagaatctt ttcctaacaa cagcagtttt aatgatattt      2580
     cagatgactc ggaagactcg gatgcaaatg aaataaatcc attttcattt gaattagctg      2640
     tagagaacga ttgaacacat ttcatttcag tttttttttt ttttttgcca aagaacattt      2700
     tttaatacta agtatatgta agcataaaat cttaatatat atcmttttat tcctatttaa      2760
     gcaaaaatga aatccatctt tattatagat aataaaaatc agtataatat gtaagaaaat      2820
     aattaacgta ggtataaaaa aagaaatcta acttcagatc acgtatacgt tatgttgtct      2880
     tccatgggca gttaaggtag gcgtggtcaa acttacttaa aacattgctt aaacatttat      2940
     agtggtgtat tcttaaaata tgccaagttt cagctcgata tatacaattt tcgattttat      3000
     gccgcttatt tggcaatccg gcctactgtg c                                     3031
//
ID   Transib-1_DK repbase;    DNA;    INV; 3268 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3268
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1217-1217 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 16-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 3268 BP; 1061 A; 548 C; 591 G; 1057 T; 11 other;
     cgkcgcacag tggttgcgcc cgtaggccat aaatcgaaaa atcgacttga aaataattag        60
     tcaaaatgtg aagaatttgt ctctaaattg tctacatttt gtcattgcaa actagtttct       120
     cccggaattc taacgggaca ttctmaaaat agaatgcaaa gtgtgagcac gtgttcaatt       180
     ttgctgctgc agstgcgtta gtgagctttt cgtcaaaaca aaagtgaagt tcaawgtggt       240
     cggacgttcg caaaagtkct ccaaatttaa ttatttaaaa tgcattttaa agttgaaggt       300
     attaacttta ataaattggt tttatgaaaa ttatctgact aattaaatat tatttgtgta       360
     ttttatagcg attaaccctt ttttgtctat tttgttaacg tctttttcat gtttagttaa       420
     agttttagtt gtgatgccac gaaatgccac awataatatg ktagtgtggt mtgatagggt       480
     actgtgtgcc waaaatcggc tgcagaaatt tgcagaggtw aatataatcg gaaaaatact       540
     gacgccatct agcgtttgcc aagggaaagt tttcccttat tgcgcttttg ttttgttctc       600
     gtcgctcgtg tttgtaatgt ttttagaaac atttttattt atttatttca ttgaaattca       660
     cttttcagga gattcccata agcgtgcatt tacacgacta tatattttga atctttggtg       720
     tgcagaaggt ggcaccaatg ctggaagatt aaaaaaagtt attgaagtta tgcaagagca       780
     aattgaaaac aacggttaca ttcccgagct aagccaacta ccaaaacgaa ttgattgcat       840
     atgcaaaaga attgctactt tttgggatag atacaagcgg aagaaaactg caattatgca       900
     atatcwatca aattggctta atgaaataga aacaattgtg ttgacctgtg gtcatgagtc       960
     gtctcaacca aaacaagaaa gcgccaatct tggacggccg aaaattgatt ttatagattg      1020
     ttcgaataga gcaaaacgtc gaaggattgc tgaaatagcg aaaatggata actctgctgc      1080
     ttccttgctt cgatcgtgca gcttgtcttc aggcccaaaa cattgccaag ccgatattga      1140
     cgaagtttta tcactttttg tggagacgaa tttaacgaaa catcaatatt tgcttattcg      1200
     taagtttatt aatcgcttgt ttcatttgat atactgccga gttacgagca ggttttgaaa      1260
     gcaaaaaaaa acagctaccc agaagatatc agcgttactg aagcaaaagc tgaaggtcaa      1320
     ttgcaaagtt tgttagacca tacagcttca cggattttaa aacttcaaca cgaagttatt      1380
     gagaacataa aggatgattc cgctaaaaac ttaattttga taggaaaatg gggattcgat      1440
     ggtagcaccg gacagtctga atataaacag aaagcgctta acaataattt ggacgactct      1500
     actctttttg ttacctcata cgtaccattg cagctgatta caaattccag tgatcccaaa      1560
     ggtcaaaaaa taatttggaa aaatccccga ccgtcatcta ctcgcttctg cagaccaatg      1620
     aggttccaat ttgaaaaaga aacagctcaa ttagctttaa acgaagaaag gcattttaag      1680
     gaacaaatta ataagctaaa ccagactgta tgcgatatcg gcaataaaag aatcgaggtt      1740
     aaacacagct tgcaattgac catggtagat ggaaaaataa tatttttata atatttttaa      1800
     aatatgtaat gccctcagcg atacgtcttc agtcaaatgt tacatttgta aagcaaagcc      1860
     aacggaaatg aacgacttag agacgtgttt ggagaagagt gttaatgaaa actcttcgag      1920
     tttggattat caccgttgca ctcatacata agattcttcg aatatttttt gcacgttgcc      1980
     tacagattag atcaaaaaag ttggcgaatt tataccgccg agggaaaaca gtcactttct      2040
     ttaagaaaaa aagaattcac ataattaatg ctgacaaatt cagaatatat gctcttgaca      2100
     ctgccaaaca attgttgttt gtatgattgg tactacttcc caccctcagt gcacaaagtg      2160
     ttaatccatg gtgcagatgt gattaatttt gctcttgttt caattggaga attatcggaa      2220
     gaagctgcag agtcgcgaaa caaagacata aaacaatata gaaagaagaa cacacgaaaa      2280
     gtatctcgaa ttgccacaaa tagggattaa attcatagac tacttttatc ttctgatcct      2340
     tttattacag gactaaggaa attaccctgc aaatttaaat ccaatttaat gatatcaacg      2400
     ttagaattgt tagaagaatt tgattactct gttatgtttt tctatgtttt ttgatttcat      2460
     tgattttttt ttattttatt tttaatttta tttgttatgg ctcctaattt gtttacaaaa      2520
     ttgtctaatt attaaagtat ttgaatatta cttgtgaata gcgcccaaat aagaacacgt      2580
     cttcatttgc tgagttaata tttcaaactg atttgatttt attcaaatcc tagcttatat      2640
     agctaacatg aaatgtattt tgatcttagt tttagaccca cgcatcggac agtttccgat      2700
     cgtgggaaat actctaagtg cgataagggt gcacacagtc aaccgatagc acatttcttg      2760
     aacaaaccca gaccgctcac aggaggtcat atttcgggtt gcttgtatta cacaggccca      2820
     agtggcggtt ttacttaaag atattcaagt actgtgcact gcggcagaga tttaatgcct      2880
     aacagatgca tcttatctat ttacatgttc atgtgtgaac aacttgaaac tggtacttat      2940
     ttgtgtttac aatttttgct atgtcagctg tatgatatag ttctccgatt tggactatat      3000
     ttggcaagca tatataaaac tggtccaatc atactatctg gaagtttggt ttacatatct      3060
     tgaaaaacaa aaaagttttt catactatat acctatttct atcctatcgt tcctatggca      3120
     gctatatgat atagacgtac gatatggcca attcttttac tatgcatttc aaatattttt      3180
     ttagaatttt ggaaaaaatt tcacattgat atctcaacgg aaagtattta tggccgcggc      3240
     tccatacaag cccaaccact gtgcgtcg                                         3268
//
ID   Transib-1_DMo repbase;    DNA;    INV; 2997 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-2997
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2997 BP; 1013 A; 529 C; 558 G; 897 T; 0 other;
     actgcacatt gggccagcga gccgattttt cgacgaaaat tcaaattttt tatagaaagt        60
     aaacctattt tgagaataaa attttagtag tatatacttt gactaaaatg aatcaaaaga       120
     ttttaattgt tttgatgcat ccctggcatt ttggcagccc ttcaaagtca gttgtttgat       180
     tgcatgcgtg tgaaactgaa aagcgcggga aagtttttgt ttacttgcaa gcgtgccaaa       240
     attttgtggt ttgatcaatt ttttactaaa attatggaaa agaaaggcca aggtatgtag       300
     aatatttata ttaaaaagat tttgtctatg tttgctaatc tgttttttgt gtgcgtttat       360
     ttgtgttgtc caaaagtaga aaaaagctaa cctgctagcc cgtctgttgt ggattataac       420
     taattttgtg ccaagttgtg ccaaaaagta attatgtgtc atgatagtgc aaagtgtata       480
     taaactaact gtaaaaagct tttttgctcc attttgttct aatttgaata aatcactaat       540
     attgtagttg tggttgagtt cgcctataag caactgcttg atatctacat gcaaaacaat       600
     cgtagcgcat ctgccgtttc gagttggatt tattatgaac tcaaagaatt cgatttaagc       660
     acggaaaaaa aggatgaaat caacaccaaa gtgagaagct ttcaccttta cattcagaag       720
     aacttggcaa aatgtaatag aagtatggcc agatttaaga caaagcatac cgagtggctt       780
     ttgtccaata tggccataac agtaagttca ttgttgtctt caaatccaaa gccgttaaca       840
     tcaagaccag ttggacgccc acccattgaa tatgttaacg ccggtccccg tcagaagaga       900
     aaattggcat ccgatttagc tgtacatcag ggtcacaaca catctcttct tgtgcatgcc       960
     gccgcagttt cggccgaaaa atcgaacgag gaagatacag cccttgtgct aaaaaatata      1020
     tatcttactc cgagtgacca caataaggtt agaaaaaatc tttttacgca gaaaactgac      1080
     tcggttcgac taacggaaga tgaagcctta gcatatctgc ttgaaaattc attaagtaaa      1140
     agtcaataca acaactttcg cgagctcagc atttcccgat cttgtgaact ttttcctgct      1200
     tacaacaaag tgagagaagc taagtcaaaa tgtagacctt ttgatattaa tgtaaccgag      1260
     tcagttgcta aagtcccgct gcaaagtgtt ctagaccaca ctagttgccg tataattcaa      1320
     atgcaagaag atttatttaa gcagcttggc aatactttaa gtctgaccct tattgcaagc      1380
     tatggatttg atggaacaac cggacaaagc agctataagc aacacttttt tggatgtgat      1440
     tcactcctta ctgacgactc gctttttgcg acaacaataa tcccccttaa attaatggac      1500
     catattggaa atgtattttg gatgaatcgt actcctcagt cgattagatt ttgtagacca      1560
     gtcaagcttg agtttgttaa agagacaaaa gaccatattc ttgctgagaa aaaaaatttg      1620
     gataatcaaa tagataattt gtctgcatac gtctgcaccg ttgtaaatgg aaaatcaatt      1680
     tcagttaaat atgatctcca aatgacactt ttagatggaa aggttttaaa cattttgact      1740
     gaaaccaaat cttgccaatt gtgtccgata tgtggagcga gtccaaaaga cttcatgaaa      1800
     aatgctgaaa tggactcacc aaaatttaag ccaagacatg aagcattaaa atatggcata      1860
     agtcctctac atggttggat tcgatttttt gaattcgttc tcaaaattgc atatagactg      1920
     aaacttaaaa aatggcaagt gagagatgaa aatggaaaaa aagaaatggc gaaacaaaaa      1980
     aatacgattc agaagaagat gtggaatgct atggctctac atgtggataa gcctaagcag      2040
     aatggcaatg gaaatacaaa cgacggcaac acagcaagga gggcgtttgc aaaacctaag      2100
     ctactagctg aaattttagg tcttgatgaa aatcttattg catattttaa cagtatcttg      2160
     attgctattt cttgccacct accaattgat ccaacacaat ttaaaaagta ttgtcagaaa      2220
     accgtaacac tatatatgtc cttgtatcca tggtttccaa tgtcggcaac agtccataaa      2280
     gtgttaatgc acggctacca aataatagaa gcatcaatcc ttccattagg tgttcttggc      2340
     gagaacgcct cagaggctcg caacaaatat tataagagtg acaggaggct acatgctcga      2400
     aagagtactc ggcaaaaaaa catggaagac gttttccaca gagcaatgga ttcctcagat      2460
     cctcttgtgt cgagcatcta cctagcaaaa agattgggcc agcaaaataa actaccccta      2520
     ccagcagacg taatcgaact tttggaatca ccaaacttcc tatatccttg taacatggac      2580
     aataataaca atgctcccgt ttttgatgct aacaatagtg attcagattc tgactctgaa      2640
     aatccgttta caatagaaat tgatgtagaa gacgactttt aggaacattt ttaaatgtaa      2700
     aattgttatt tttaatgcat ttttattttt tatttattaa tattaaagtt aagtgttaaa      2760
     taaatgaatt aaaaacattt gttgaattta acgactgcta gcatcattaa ttaccgtaaa      2820
     agtatcaact agaggaaacc tatctcatat gggcggctat ggaaggcgtg gtcagatcgg      2880
     tttgaaactt agatatattt ttatgtgcat cgacactatc atatgtacca aatttcaaga      2940
     acctagcttg aaaactttaa ttttcgtcga aaaatcggct cgctggccca atgtgca         2997
//
ID   Transib-1_DRh repbase;    DNA;    INV; 2996 BP.
XX
AC   .
XX
DT   22-DEC-2011 (Rel. 17.08, Created)
DT   22-DEC-2011 (Rel. 17.08, Last updated, Version -1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-2996
RA   Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1418-1418 (2012).
XX
DR   [1] (Consensus)
XX
CC   >96% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(921..1586,1656..2714)
FT                 /product="Transib-1_DRh_1p"
FT                 /translation="MVERFKSKHTEWMSSKISITINDNYKTPQKPGRRTLS
FT                 YANAGPRLKRKLASELANEKEHNTTFLMHAAAVSAKKERNTNVALALKEIT
FT                 TPAEYPTELRKHLQIQKPTPLTPNEALAYILENSLTKQQYVNSRVLNINHH
FT                 SDIYPSYNQVIQAKMQCRPMGIEVTETTAQVSLQNLLNHSAERIIEMQIDV
FT                 FKQSPDSSVLKLICSYGFDGSTGQSAYKQKFELTHFNEISGLTEHRNPFDY
FT                 QIGNLKPFYYTLNEANNITVTFEMHMTLIDGKVLNVLTNNRSTQCCPICGV
FT                 TPTKVMEIKDFNSKIFTPKLEALKFGVSPLHARIRFLEFVLNISYKMEIQK
FT                 WHVKGDDKIKMSARKKYIQEKMWNDMGLRVSVPKQNGSGNSNDGNTARRAF
FT                 ANSEQLSFITGFDKTLLNNFHIILIAISCNFYINSEKFRTFCEKTFCLYMH
FT                 KYPWYPMSPTIHKVLVHGFQINNSTLVPLGCLGENASEARNKIYKKDRLSH
FT                 ARKNSRINTITDIFHRAIDSSDPLLSSVCLKEREVLSLLELPSTENNIPFE
FT                 KELQSDCDSDEDLIEGCSVILEEEEDNV"
XX
SQ   Sequence 2996 BP; 1075 A; 531 C; 502 G; 888 T; 0 other;
     gcactatggt ccagaagtcg atttttttgg cataaatacg aaatttttat gttaatgttt        60
     tgtatttttg atttaaaatt cttaaagtta atacattaaa cataaacaaa actaaaaaaa       120
     ttagctttaa aagcttcact gaagctttct atgagctttc caaaccacac tctgtttact       180
     tttttgcgtg aaaataaata ttctttgtcc gaacaaactg atagtaatgg aaattgtaaa       240
     tcaaggtatg tattttttaa tgaatatagt ctgtttatgt gtagacttag tgtttgtgtt       300
     ttgtttaatg ttcaatttat gtgatttttt atagaaaatt aacatgagtc ccttgtgttt       360
     cgtggaataa aactaacgac ctgacggctg ctgacaaaaa ctaattacgc cagtttatac       420
     taatatatgt cgttcattat cgctaattaa caacttttcc ccgttcgtcc cctttttctc       480
     gcaattccgc aatattcagc gacgttcgaa tttcgccata gcgatctctt cgatatttgg       540
     ctcagcaata atcgcaaaat atcttttgtg tcagattgca tttataaaaa aattagccat       600
     taccacgtcg aagatgatac aaaattagaa atcaataaaa aaacaagtaa ttttgaaaca       660
     tttataaaaa aaaaacaaga gagaacgcta tagtcgggtg ccccgactat cagatacccg       720
     ttactcaggt aaagggagtg cgagggagat ggagatagaa actttgatca cgcataactt       780
     tttaacgaat ggtccgattt gaaaaatttc ttctacattt cgataggtat tgataaacac       840
     aataaaactg catttttact ttgacgaaat attaaaattt ttaaaatcgt atataagcga       900
     aactaccaaa atgcaactat atggtcgaac gatttaagtc aaagcataca gaatggatgt       960
     catctaaaat atcaattaca attaatgata actataagac accacaaaaa ccgggacgcc      1020
     gtaccttgtc ttatgcaaac gcaggaccac gattgaaaag gaaattggca tctgagcttg      1080
     cgaatgaaaa agagcacaac acaacttttc ttatgcatgc tgcagcagtt tctgctaaga      1140
     aagaacgtaa tacaaacgtg gccttggccc ttaaagaaat tacaacacct gctgaatacc      1200
     caacagaatt aagaaagcat cttcaaatcc aaaaaccgac tccactcaca ccaaatgaag      1260
     ccctagccta cattctggaa aattctttaa ccaaacagca atatgttaac agtagggttt      1320
     tgaatataaa tcatcacagt gacatctatc cgagctacaa tcaagtaata caagctaaaa      1380
     tgcagtgtcg cccgatgggt atagaagtta cagaaactac tgctcaagtg tcactgcaaa      1440
     acctattgaa tcattctgca gagcgaataa ttgaaatgca aattgatgtt ttcaagcaat      1500
     ctccggatag ttctgtactc aaattaattt gcagttatgg ctttgatgga tcaactggac      1560
     aaagtgcata caagcagaag tttgaataaa aacacctgac gttcaggtct cagatcagtc      1620
     tttgtttgta acttctgtta tacccataaa aatgattgac tcatttcaac gaaatatctg      1680
     ggttaacaga acaccgcaat ccgttcgact atcaaatagg taatctaaaa ccgttttatt      1740
     atacactaaa tgaggctaat aacataacag ttacctttga aatgcatatg acactcattg      1800
     acggaaaagt actaaatgta ctaactaaca atagatcaac tcaatgttgt ccaatttgtg      1860
     gtgttacccc aacaaaagta atggaaatca aagatttcaa ttcaaaaatc tttacgccca      1920
     agcttgaagc tttaaaattt ggggtaagcc ctctacatgc tcggattcgg tttctagaat      1980
     ttgtcctgaa tatatcatac aaaatggaaa tacaaaaatg gcatgtaaaa ggtgatgaca      2040
     agattaaaat gagtgcgcgg aaaaaatata ttcaagaaaa aatgtggaat gatatgggtc      2100
     ttcgagtaag cgtgccaaag cagaatggta gcgggaacag caatgacggt aatacggcaa      2160
     gaagagcttt tgcaaatagt gaacaactat cattcataac cggctttgac aaaacccttt      2220
     taaataattt tcacattata ttaatagcaa tttcatgtaa cttttatata aactctgaaa      2280
     aatttcgaac tttttgtgag aaaacgtttt gcctatatat gcataaatac ccgtggtacc      2340
     caatgtcacc aacgattcac aaagttctag tccacggttt tcaaataaat aattcgacgt      2400
     tagttccact aggatgttta ggtgaaaatg cttcagaagc ccgcaataaa atctacaaaa      2460
     aagaccgact ctcacacgca aggaaaaata gtcgaatcaa tacaatcact gacattttcc      2520
     acagggcgat cgattcctcg gatccgttac tatctagtgt ctgtttaaag gaaagagaag      2580
     tattaagcct tctggagctg ccgtcaaccg agaacaacat cccatttgaa aaggaattgc      2640
     aatctgattg tgattcggat gaggacctga tcgaaggctg ctctgtaata ctagaagaag      2700
     aagaagataa tgtttaagat aaaacccata cataacatat atatatatat atatagatat      2760
     ttaagtcatt cctgaaataa atgtaaatat attgtctgaa ttcagcgtca tactccattt      2820
     ctaataataa tactacgaat cggtttgtat gggaggcaat aggaggcgtg gtcgcacgga      2880
     ctcaaaattt tttttacatt attatctttt tataaaaaca caatgtgcaa agttttaggt      2940
     ctgtaactct atttttagaa tttatgccaa aaaaatcgac ttctggacca tagtgc          2996
//
ID   Transib-1_DSer repbase;    DNA;    INV; 1696 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1696
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1847-1847 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs. 38-bp TIRs.
XX
SQ   Sequence 1696 BP; 608 A; 280 C; 275 G; 532 T; 1 other;
     cactatggtc cagaagttga tttttttggc ataaattcga aattttcatg tttatatttt        60
     gtatttttga tttaaaatta ttaaagttaa aatatcaaac ataaacaaaa ctaagaaaat       120
     atgctttaca agcttctctg aagtttttaa tgagctttcg aaaccacaca atcgaatagc       180
     tgtttggtaa taagaaattg gcggccaatt gctgtgttta sttttttacg tgaaaataaa       240
     aattctttgt ccgaacaaac tattgatagt aatggaaatt gtaaatcaag gtatgtattt       300
     tttactgaat atagtctgtt aatgtgtagt cttagtgttt gtgttttgtt taatgttcaa       360
     tttatgtgta ttttctatag aaaattaaca tgcgtccctt gtttttcgtg gaaaaaatct       420
     aacgacctga cggctgctga caaaaactaa ttacttcagt ttgtactaaa atatgtcgtt       480
     ctttatcggt aattaacaac ttttccccgt tcgtccccct tttcacacaa ttccgcaata       540
     tttagcgacg ttcgaatttc gccatagcga tctcttcgat atttggctca gcaataatcg       600
     caaaatatca tctgtgttag attgcattta tgagaaaatg agccattacc acgtcgaaga       660
     tgataaaaaa ttagaaatca ataaaaaaaa caagtaattt tgaatcaatt attaaaaaaa       720
     tgactaccaa aatggaatac caggaaaaaa atgttgaatg atatgatatg ggcctacgag       780
     taagcgtgcc aaagcaaaat ggtagcggga acagcaatga cggtaataca gcaagaagag       840
     cttttgcaaa tattgaacaa atatcaccca taaccggctt tgacaaaacc cttttaaata       900
     attttcacgt tatattaata gcagtttcat gtaactttta tataaactct gacaaatttc       960
     aaactttttg taagaaaacg ttttgcctat atatgcataa atacccgtgg taccccatgt      1020
     caccaatgat tcacaaaata ttagtccacg gttttcaaat aaataattca acgttagttc      1080
     cactaggatg cttaggcgaa aatgcttcag aagcccgcaa taaaatctat aaaaaagacc      1140
     gactctcaca cgcaaggaaa aatagccgaa tcaatactat gactgacatt ttccacaggg      1200
     cgatcgattc ctcggatccg ttactatcta gtgtctgttt aagggaaaga gaactaaaaa      1260
     acacaaaaaa aagctattcc caaagaagta ttaagccttc tggagctgcc gtcaaccgag      1320
     aacaacatcc catttgaaaa ggaattgcaa tctgattgtg attcggatga cgacttgaac      1380
     gaaggcagct caataatact agaagaagaa gaagaagaat ataatgttta agacaaaacc      1440
     catacataac atataaatat gtacagatat acatatataa atgtaagtat attgtctgaa      1500
     ttcagcatca tactcaattt ctaattataa tactacgaat cggttcgtat gggaggcaat      1560
     agagggcgtg gtctcacaga ctcaaaagtt ttttttacat tattgtcttt ctgaaaaatc      1620
     ataatgtgca aagttttagg tctgtaactc tattttttga atttatgcca aaaaaattga      1680
     cttctggacc atagtg                                                      1696
//
ID   Transib-1_DSuz repbase;    DNA;    INV; 3905 BP.
XX
AC   .
XX
DT   12-JUN-2021 (Rel. 27.01, Created)
DT   12-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3905
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 111-111 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus. 5-bp TSDs (mostly CNNTG).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(698..1279,1269..2831)
FT                 /product="Transib-1_DSuz_1p"
FT                 /translation="MLYRYIEKRNINFVGSSLKNVHNFXHSVLETRSEHTM
FT                 ANFKKAEIVDLLSEYNNDISLVAGFIASKAGISDDNCIKAIKLKVCKLRSE
FT                 YHVKRSXLKKSSLNFNERHSTWLNSLFLFPMPLKRGPSERGRPKLKFSEMS
FT                 NRSQRREISNISVKHXNDSQKLLXAGTYAAKRSGDKNLSSALNNISNRPEL
FT                 KRELKGNFKKKVPMKPXLFFLNNSFSKAQYTAIRISSKESGADIWPSYNTL
FT                 REAKHKCRPSAETVKISEDRAEVKLQALVNHTTQRLLTLCSDLIISLGSNS
FT                 LDLQAIFSYGFDGSSGHSAYNQKFLNGPGKDENLFATTLIPLRIIVRPSGE
FT                 IIWNNKSAQSDKFCRPIKLQFVKESKELILSEYNNLEKEISSLXLFQTITE
FT                 NTNISVEFVLSLTLIDGKVLNVLTGTKSMQTCPICHRNPKDFNVNANIEGR
FT                 LFVSIKSALTFGISPLHAYIRIFEMCLQISYRLNIKXHHVRSEEDKLXFNS
FT                 RKAYIQNQFWEKLSLRVSQPKPGGYGNTNTGNTARRAFKDIDVLSKIKGLK
FT                 SELLYKLKIILIVINSKHDINDQKFEKYALQTALLYIDAYPWYPMTATLHK
FT                 ILVHGADIIRTSILPVGMLGEEASEAKNKFYKNDRINHTRKCDRISTMSDL
FT                 FYRSMDCSDPVISSLRLKNCKEREQHFPKEALCMLNPNEDLYISDSDFSDS
FT                 DSEDQNSLELSEEEY"
XX
SQ   Sequence 3905 BP; 1312 A; 686 C; 674 G; 1223 T; 10 other;
     cacactgggc cagccgatcc gatttttggc caaaaatacg tttttttttt ttaagaaaat        60
     gacaagaccg agtatggagt cctttttatt atacattaaa ctaatttatg ccaaagtttc       120
     aaagaattcg ggcaagtagt ttttttttac cgtattttta aagttaaaaa ttcatcaaat       180
     attgatggaa atgaaaaaaa atctagaagt caaagatgct gatgtagctg ttcgacttct       240
     tcacagaact tttagaagtc attattttca acaagtaaaa aattataaat agctcttctg       300
     acttacttgt ttcctaaaag aaactttttc gttgattttt actgcttttt ttagcaaatg       360
     agtactttgc ttttcgagtg cttttgagtg ccatccccga atgaagtcat tacatcaaaa       420
     ataaattctt taattaattt actaaaatcg ctcatcgccg actcgatgcg gttttgcctt       480
     agttttcagt aattttagtt ttagttgatg gcttaatttg aagtcgaacc attttgatga       540
     gctttactaa gaatgcctaa aagtatgccg tatttttttt ccgtcaggtt ttaatgtacg       600
     ttttgcgcgc caaaatttga ttttagtctg cctaacctct aaaatctact tttttcattc       660
     attcccgctt cttttatttc tgaaacccaa caatcgaatg ttatatcgat atatcgaaaa       720
     gagaaatatc aactttgttg gmtcttctct aaaaaatgtt cacaatttcw gtcattcggt       780
     gctcgaaact cgaagcgagc acaccatggc taactttaaa aaagcggaaa ttgtggactt       840
     actttctgaa tacaacaatg atatatcttt agtagctggt tttattgcat ctaaagctgg       900
     aatttctgat gacaattgca ttaaagctat aaaacttaaa gtatgcaaac tgagatccga       960
     ataccatgtt aaaaggagtw atttgaaaaa atcaagtctc aattttaacg aacgtcattc      1020
     gacttggtta aattcattat tcttatttcc aatgccctta aaacgtggtc catccgagag      1080
     gggtcgtccg aaattaaaat tttcggaaat gtctaacagg tcgcagcgtc gagaaatttc      1140
     aaatataagt gtcaagcata akaatgattc acagaagctt ctcsaagctg ggacatatgc      1200
     tgcaaagagg tctggggata agaatcttag ttcagcattg aacaatattt ctaatagacc      1260
     ggaattaaaa agggaacttt aaaaaaaaag tgccgatgaa gccttgsctt ttttttttaa      1320
     ataattcgtt ttctaaagcg caatatactg ccattcgaat atcgtcgaag gaatctggtg      1380
     ccgacatctg gccttcttat aatactttaa gagaggctaa acataaatgc cgtccgtccg      1440
     cagagactgt gaaaatttcc gaagacagag ctgaagttaa gctacaagct ttagtgaatc      1500
     acacgaccca acggctttta actttatgtt cagacttaat aataagttta ggcagcaatt      1560
     cacttgactt gcaggctata ttttcctatg ggtttgacgg tagcagcgga cattctgctt      1620
     ataaccaaaa atttttgaat gggcctggaa aggatgaaaa tttgttcgca acaactctaa      1680
     ttcctcttag aattattgta agaccatctg gcgaaataat ttggaacaac aaatcggctc      1740
     agtccgacaa attttgtagg ccgataaagt tacaattcgt gaaggaaagt aaagaattga      1800
     tcttatcgga gtacaataat ttggaaaagg agatttctag tctacawctg ttccaaacga      1860
     ttactgaaaa taccaatatt tcagtagagt tcgtgctatc tcttacatta atagacggaa      1920
     aagttctaaa cgttttgaca ggcacaaaat ccatgcaaac atgccccatt tgtcatcgaa      1980
     atcccaagga ttttaatgta aatgccaata ttgagggtcg tctttttgtg tcaataaaat      2040
     ctgcacttac cttcggcata agcccattgc atgcctatat tcggattttt gaaatgtgcc      2100
     tacaaatatc gtacaggctg aatataaaaa kacatcacgt tcggtccgag gaagacaaac      2160
     tggwatttaa ttccagaaag gcttatatcc aaaatcagtt ttgggaaaag ctgagcctaa      2220
     gggtaagcca gccaaagccc ggcgggtacg gcaacaccaa cacwggaaat actgccagaa      2280
     gagccttcaa ggatatcgac gttctttcaa aaataaaggg cttaaaatcc gagctccttt      2340
     ataagttaaa aattatttta atagttatta actcaaaaca tgacataaat gatcaaaaat      2400
     ttgaaaaata tgctttacaa acagctcttc tttatataga tgcatatccg tggtacccaa      2460
     tgaccgctac tttacataaa atattggttc atggagcaga tataattcga accagtattt      2520
     taccggtagg tatgttgggc gaagaagcct ctgaggctaa aaacaaattt tacaaaaatg      2580
     atcggataaa ccataccaga aagtgtgatc gcatatcaac gatgtcagac ctgttttata      2640
     gatcaatgga ctgttccgac cctgttattt cttcattacg tttaaaaaat tgcaaggaac      2700
     gagaacagca ctttccaaaa gaagcattgt gtatgttaaa cccaaatgaa gatttataca      2760
     taagcgactc agacttttcc gattcagact cagaggacca aaactcccta gaattgtcag      2820
     aagaagaata ttaaaggctt acaatctcta aaatccatct attcgtccgt tcaactctcg      2880
     gtttctttac caatcacatg aaatcccaca taaacggtca acgtggcgcc cacaacattt      2940
     gacagaagga tcatgatcac tagaatagac agactgtcag tttctgtttc aataccgctt      3000
     gcgagctgag cttaaaggca agcgaatcta atccgtttcg ttttctttgt tgacaaatgt      3060
     tgtgagcgcc acgttgaccg tttatgtgga atttcatgtg attggtacag aaaggtacgc      3120
     taaccgttca tgtcactttc gaaatctgta tagtttccat gcggaaacta ttaaacagga      3180
     aattacagcg cagagatgaa atgcctggca gagcgcttaa gggaggactt aagtatgcct      3240
     aaaggtatgc tgcatttctt gtactttctt cggagaagaa ctaaaatata ttatacaaat      3300
     ataaatgtag cataaacaaa tacgtagtca aaggcctcgt agctagcact acacctccta      3360
     tgttagtatt agttttttaa actttactat gatctcaaag tgagacttca gaaaatgtca      3420
     aattaacatt aaacaaatta aaaaacaata ttttacaaac aatttttttc taataatttg      3480
     attataagaa tctaaaatag gaagaaaaaa atagaaaatt ttgttaggtc gattattaaa      3540
     taaacgttca agtgggagcc tccgaaagta gcaattttta acggttcata aatctcaaac      3600
     gacataatat tttatagtgg tgttaatttt tttgaatttg ttttctctca tacttaatcg      3660
     tgtatgaaaa tggattgagt gcgtcttcta gttatttttt taaaaataaa aaaccgaaaa      3720
     gtatgtaaaa ttttccgatt tggtctggat tatctatacc atataaaatt ccaataaatt      3780
     ttacttttag ttcgttgaaa agttcaatct tttaagagag aaatgcaaaa aactgcatcc      3840
     ttcaactatc ccaggaaaga aattacagat ttttggccaa aaaattaact ttctggccca      3900
     gtgtg                                                                  3905
//
ID   Transib-1_DTa repbase;    DNA;    INV; 1856 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   22-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1856
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (22-JUL-2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           536..1621
FT                 /product="Transib-1_DTa_1p"
FT                 /translation="FFSGNLTFANVDLFAVWNSEKGRREQEKAVHCFFESH
FT                 SNNNVDKETLKVKSLQFCKTLHYKWQKCNRNYKFFEKKHSNWLSDVTILPL
FT                 KKPFGRPLIPFASKGDRAQRLEAAELANTQSNEVLLLVQAASAAAWRQGLR
FT                 DLAAVLRILASTPEKAKEVRESLTKPSEQPIRASKDEALALILDQGYTKEQ
FT                 YCAFRDDVRKRKVDIYPLYKEVAEQKKKCRPVNIDVSETVAKVSLQDLLVH
FT                 TSFRIVALQEDVIQNVLANQHTDFLSAELIVSYGFDGSTGQGNYNQAYADK
FT                 KSCDTDSCLFATTIMPLRLIDASGNVLWNNRTPQSIRFCRPLKLELLKETK
FT                 DLIFQFFEGERGVAKNLEF"
XX
SQ   Sequence 1856 BP; 608 A; 321 C; 381 G; 546 T; 0 other;
     cactatgggg taaaagtccc cttttactgg catttaggca ttttttaaaa gtgttcaaat        60
     tggaaaaaaa gtaatgggaa cgtattaaca aaacatcaaa ctgttatgcc ttatacttaa       120
     aatgttaatt tttaacagtg ttatgttaaa ataacagctg caaagtcagc tgttgtttat       180
     gaaagcgcac gtgccaagtt tgcacagttt ttgtggtgaa ctttgatatc ttcttattcg       240
     cgtacaaaac aacaaataaa caatctaact tttgaaaatg gatttcccag gtttggacta       300
     tatgttaaat gtaactaatt gttcaaattg tgcgtgttta tactaatatt tgttaatttt       360
     ataactgcat ctttagctgg attctgaaaa atattttcaa ctttggaaag gattttggaa       420
     aagaagttta gattagttta aagtgcgtcc aagtgtatgt tgtagtgttg tcaattctga       480
     atccataggt gttagtctta ttctgcactt ttccgcacta ttggtgcaaa tctaattttt       540
     ctcaggtaac ctcacatttg ccaacgtcga tttgttcgct gtatggaata gcgagaaggg       600
     ccggcgtgag caagagaagg ctgtacattg ttttttcgaa agccactcaa acaacaatgt       660
     ggataaagaa acattaaaag taaaaagctt gcaattctgc aaaaccttgc attacaaatg       720
     gcaaaagtgt aatagaaatt acaagttttt cgaaaaaaaa cattcaaatt ggttaagcga       780
     tgtaacaatt ttgccattaa aaaaaccttt tggacggcca ctaattccat ttgcgtcgaa       840
     aggtgatagg gctcaaagac tggaagcagc tgaactagca aacacgcaga gcaatgaagt       900
     cctcttgtta gttcaagcag caagcgcagc cgcctggaga caaggactac gtgatcttgc       960
     tgcagttctc agaatacttg caagtacccc ggagaaagcc aaggaagtca gggaaagcct      1020
     aacaaagccc agtgagcaac ccatacgtgc gtccaaagat gaagcgctgg cgttaatatt      1080
     ggatcaaggc tataccaagg agcagtattg tgctttccgg gatgatgtaa gaaaaagaaa      1140
     agtcgatatt taccccttat acaaagaagt agcagagcaa aagaaaaaat gtagaccggt      1200
     gaacattgat gtttcggaga ctgtagctaa agtctctctg caagaccttt tagtccatac      1260
     gtcttttcga attgtggcac tacaggagga tgtaattcaa aatgttttag ccaatcaaca      1320
     cactgatttt ctatctgctg agctcatcgt aagctatgga ttcgatggaa gtactgggca      1380
     ggggaattat aaccaggctt acgcagataa aaaatcatgt gatacagatt cttgtctttt      1440
     tgccactact attatgcctc ttcgactgat tgacgcatcc ggaaatgtgc tatggaataa      1500
     tcgcacccca cagtcaataa ggttctgtcg tccacttaaa ttggagcttc ttaaagaaac      1560
     taaagatcta atttttcaat tttttgaggg cgaaaggggc gtggcaaaaa acctagaatt      1620
     ctaaaatctt agcacatatt ggaagcaaaa tttaataaat gcagttctaa agatgcctgt      1680
     aatataaaaa aaaatttttt gtggggaggg ggggggaggc ggttttgaca cgcccacttc      1740
     ttaggatagt ttccttaggt ctatagtaac atattacaaa aaaccgcagt caaaaatctc      1800
     ttttggttca cttgtaatat taaatgccag taaaagggga cttttacccc atagtg          1856
//
ID   Transib-1_FoCa repbase;    DNA;    INV; 3853 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-3853
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2492-2492 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.9% identical to consensus. 5-bp TSDs. 383/385-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1231..3114
FT                 /product="Transib-1_FoCa_1p"
FT                 /translation="MSFFLDKEKQYLDGYFVLPKNFFPSERTKRRRVEELE
FT                 KSLSPEDPGDLVHAVSRTLNKHGHPEAARIIKKSLSPSKQQVILDSLSKPS
FT                 TTPTPYTAEEALSLILDLGLTQTQYQRLREGANQHGCPLYPSYHEVQKCKI
FT                 SSRPPADELCVTESSASIPLNSLLQHTASRIVNMQNSVLLQIFASQHICEI
FT                 KATLICSWGFDGSSGQSRYKQKSSTSFDDSSIFATTLTPIRLTAANGTVIW
FT                 NNSSPQSIRFCRPLHLQYIKESQEKILNEQKYVEDQIAVLDPIEVFVDLGK
FT                 TITINFDLRFTVIDGKVLSAICGVKSSMCCPICEAKPSTFNSIENIGKGLF
FT                 TPKPGRLNHGISPLHAWIRLLELCLHIAYRLDIQKWQARGPVLQASVKKRK
FT                 EEIQQLLLKEMGLRVDFPNNTGSGTSNDGNTARRAFRNYEEFAKLTGLDVE
FT                 FVRRLWVILVALTCQLPLNADKFGEYCFNVVQYYLTLYQWFPMPASMHKIL
FT                 IHGKDIINSSIIPLGCLGEEGGESRNKMYKSDRLRHSRKISRTATMTDIFN
FT                 RAMDTSDPLLSSLHLDKRARYRKQLALPQEVLHMLECPSVPTTQEFGDDDQ
FT                 QVEPDENSLDYENEIELENEVSIFFPIILF"
XX
SQ   Sequence 3853 BP; 1237 A; 750 C; 742 G; 1124 T; 0 other;
     caccgtgcga cggattgaac tttttgtggc cacgcgcatt ttcaactttc ccgtaaggat        60
     atcatgtgtt ctctatatct ctgttattcc ccataatatc cattcctggt aagtactaaa       120
     aaaagttcaa aaaattagaa ttattttgat aaaaaaaaat tctgctataa gtttatactt       180
     ttggcatgag cggggttcaa agttgggatt tacaagggta gtgtcacaag tgataatcgc       240
     ggatttcaca tacaacacat caaaatgaac acaatatttg ttataatgaa ctgaaattaa       300
     ctgaaatgtg attactagtc ataatacatg atattatagc acgataatgc aatgttcgcc       360
     cgattttggt aaaaaaataa atattggaaa aataaattat atttgtgtca tatatgatta       420
     atttaactaa aatatttatt tatttcgcag aaccgaggaa tcgaaatatg aagagaagct       480
     tccttcgtgg acatgatgaa aattacttgg ttaaatgatc taggatgaat gtttggcaat       540
     tatcgttggg atgttcggtg ttattggtaa atgagttaaa ataatattct tgtttcagat       600
     tacaattgat tacggtagcg acacggacat tgacatggat tggacaccaa tttcggaaac       660
     accaaacacc gtggggggcc catcggtggg aagtcaggaa gctgaacccg gagtgtatga       720
     tgatctttcc catacggact ccacacagca acctgacgga cctaaatcgg gctattcgtt       780
     aaaaaatgag cacaattaaa gataatgccg gtggatctac gaatgacgac tcggaacagc       840
     cttcttcaga ccgacctgac ttgatggtgt cgctggcctc aagtgataag tctccagaaa       900
     caaggacaca cgacatggaa gatgacgaca cggaaggagt accaacaatt atagaaaaga       960
     agtttttggc cgaaaaggta atataagggt tattttattc tcaaaattaa taaaaaaaat      1020
     ttactgtttt ttttacttaa ataattaaaa tcatatgggt ttcagatagt aaatttaaaa      1080
     acaccgtctg aacgagttaa ttttatcaag acaactgtat cagaatcttt acctgcaagt      1140
     ttgaacgatc tgcaacagga tcacttggac agattagcaa gagcttgggc cttcaaaaca      1200
     gtcgccaaat atcagaagtg cgcaagaaga atgagttttt tcttggacaa ggaaaaacaa      1260
     tacttggacg gttattttgt cttgcctaaa aacttcttcc cttcagaaag gaccaagcga      1320
     cgaagggttg aagaacttga gaaatccttg tcccctgagg atcctggcga ccttgtccat      1380
     gcagtttcta ggacgttaaa taagcacgga catcctgagg cagccagaat tatcaaaaaa      1440
     tccctgtcac catcgaaaca gcaagtaata ctggattccc tcagcaaacc ttcaacaact      1500
     ccaacccctt atactgctga agaagcattg tccctaattt tggatttggg attgacacaa      1560
     acacagtacc agaggcttcg agaaggagct aaccagcatg gatgtccttt atatccatcc      1620
     taccatgaag ttcaaaagtg caagatttcc tcaagaccac cagcggatga attgtgcgtg      1680
     acagagtcct cagcatcaat tccattgaat tccctgttac agcatactgc atctcgtatt      1740
     gtcaatatgc agaattcggt cttgcttcaa atatttgcct ctcaacatat atgtgagatc      1800
     aaagcaacac taatttgctc atggggattt gatggatcat ctggacaatc tagatacaag      1860
     cagaagtctt caacatcttt tgacgactcc tcaatatttg caacaacttt gactccaatc      1920
     agattgactg ccgctaatgg aactgtaatt tggaacaatt cttcgcctca atccattcga      1980
     ttttgcagac ccctacacct gcaatacatc aaggagtccc aggaaaaaat attgaacgag      2040
     caaaaatatg ttgaagatca gattgcagtt ctcgacccaa ttgaagtatt tgtggacctg      2100
     gggaaaacca tcaccatcaa cttcgacttg agatttactg taattgacgg aaaagtatta      2160
     tcagcaattt gtggggtcaa atcttcaatg tgttgcccga tttgtgaagc aaaaccttca      2220
     acatttaatt ccatcgaaaa tattggaaaa gggttgttta ccccgaagcc cgggcgtctt      2280
     aaccatggta tcagccctct ccacgcttgg attcgacttt tggaactttg tttacacatt      2340
     gcataccgct tggatatcca gaaatggcag gcacgtggac ctgtgcttca ggcaagtgta      2400
     aagaagagga aggaagagat ccaacagtta ctgctgaaag aaatgggact gcgggtggat      2460
     tttccaaata atactggcag tggaacatcc aatgatggca acaccgctcg tcgagcattc      2520
     cgaaattacg aagagttcgc aaagttgact ggattagatg tggagtttgt tcgaaggctc      2580
     tgggtcatct tggtggcctt aacttgtcaa ctccccctca acgctgacaa atttggagag      2640
     tattgcttca acgtagtaca atattaccta actttgtatc aatggttccc gatgcctgca      2700
     tcaatgcaca agatcctgat ccacggaaag gacatcataa attctagtat tatccccctt      2760
     ggatgccttg gagaagaagg aggtgagtct cgaaacaaga tgtacaagtc ggatagactg      2820
     cgtcattctc gaaaaattag tcgaacagcc actatgacag acatattcaa tcgagccatg      2880
     gatacctcag atcccctatt atcatctctt catctggaca aaagagcccg ttatcgaaaa      2940
     cagttggctc tacctcaaga agtcctacat atgctagaat gcccatctgt accaactaca      3000
     caagaatttg gtgacgatga tcaacaagtc gaacccgatg aaaacagttt ggactacgaa      3060
     aatgaaattg aacttgaaaa cgaggtaagt atttttttcc ccattatttt attctaacta      3120
     tactaagtat tagcccaacg ataaaaacca acgacaacaa atgtttttag ttttatgaat      3180
     ctagtcattt ttgatcatgt tataaggtat aaagttaaat tgagtgatta taaattatgt      3240
     ttgttattat gcccatgtag ttctactcag cggccccaag ccatgtacct taatactcta      3300
     atcccaggta gtattgcggt tttaaccgac aaggggccct acctggctta aattttctat      3360
     tttcagatct ttgaatcgag ttggcatttg cacatgtgaa caacttcaaa ataattacaa      3420
     caaggcgtac gttacattta aggtaatgtt ttttttatat atttcctgta tttatttttt      3480
     ttaccaaaat cgggggaaca ttgccctatc gtgctataat atcatgtatt atgactagta      3540
     atcatatttc agctaattgt agttcattat aacaaatatt gtgttcattt tgatgtgttg      3600
     tatgtgaaat ccgcgattat cacttgtgac actacccttg taaatcccaa ctttgaaccc      3660
     cgctcatgcc aaaagtataa acttatagca gaattttttt ttatcaaaat aattctaatt      3720
     ttttgaactt ttttttagta cttaccagga atggatatta tggggaataa cagagatata      3780
     gagaacacat gatatcctta cgggaaagtt gaaaatgcgc gtggccacaa aaagttcaat      3840
     ccgtcgcacg gtg                                                         3853
//
ID   Transib-1_LHu repbase;    DNA;    INV; 4304 BP.
XX
AC   .
XX
DT   01-JAN-2012 (Rel. 19.02, Created)
DT   01-JAN-2012 (Rel. 19.02, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Linepithema humile genome:
DE   consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_LHu.
XX
OS   Linepithema humile
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Dolichoderinae; Linepithema.
XX
RN   [1]
RA   Smith C.D., Zimin A., Holt C., Abouheif E., Benton R., Cash E.,
RA   Croset V., Currie C.R., Elhaik E., Elsik C.G. et al.;
RT   "Draft genome of the globally widespread and invasive Argentine
RT   ant (Linepithema humile).";
RL   Proc Natl Acad Sci U S A 108(14), 5673-5678 (2011).
XX
RN   [2]
RP   1-4304
RA   Jurka J.;
RT   "DNA transposons from the Linepithema humile genome.";
RL   Repbase Reports 14(2), 381-381 (2014).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~275bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1965..3932
FT                 /product="Transib-1_LHu_1p"
FT                 /translation="MEKFEISNSALCNILLEPESDKSINALISHIRQHYDL
FT                 DDKTFVLVEKKLVRSFMPTFKSKFSSVLYNENVFRKKNAKWLSQHFYVAFN
FT                 EDINVGGRPVVEDFNKGSRATKYRKIQTIAESYSFEEIQKAFFKHLRDSGK
FT                 EHLIANIENLLSETSKSDRNTNDPISFTEDECISLIEDAKLSKWQYDSIRK
FT                 QISAKNADILIPYQNLSLAKQKCYPSPEHITITDKSADVDLQALLNHTCKR
FT                 ILEIPRLRVKDNLIGNNTELSLTTISKWGCDGASGHSRYKQKFSDGTTSDE
FT                 SIFVTSIVPLTLVLNNANAVNQKVIWSNAQPGSTRHCRVINFEFTKESKET
FT                 ITKKVNQINDKITFLQPTTIETDSVKIKINHSLYLTMIDGKVAQALTDTPS
FT                 SASCVICQATSSEMNNLQKLSLKTVNEEHYKYGLSSLHAWIRFMECILHIA
FT                 YRLEFRRWSVRSVEDKLKVKETTRRIQKEFREKSGLLVDYPKQGSGSSNDG
FT                 NTARRFFRDPELTAEITKVDLKLIERFGIILQTLSCGIKVDAKKFDDYTKE
FT                 TAKLYMQLYDWYYMPSSVHKILFHGSEIIQHFLLIPIGILSEEAQESRNKD
FT                 IKHYREFNTRKCSRISTNTDLLHKLLISSDPYISSLRCQPKYQKHVIDSPA
FT                 KDLLDYS"
XX
SQ   Sequence 4304 BP; 1501 A; 556 C; 655 G; 1592 T; 0 other;
     caatcttttt ttttttaaat aatctgtata aaatttccaa gagatctgtg ggagccgatt        60
     tttaaaaaac ttagttaaca attctaatgt ttaaacaaat taggaatttt tggatttttt       120
     acttatatct ccctaaaaat tatacttttg tgttatatat tgcatgaaat ttatgtaaaa       180
     aattgtaaaa atgaaaaaaa agtgttgata taataatcca attgttataa acaaattaga       240
     ttaaaccatt caggtccatg agcaaaccat tagcgttagc aagaaaatga atacagatat       300
     gacagcatta ggtaaaaata tgattatgca ttaaaaaaaa atttgcctat ttgtttaaac       360
     aatttttgtt taaacaaaaa gttataaaca acgagattat tagaaactaa tagcgttttt       420
     cgcttttacg agaaaaatta cgaagggaat gtgccttgca aaattttttt taaatcttaa       480
     ttttcaataa aaaatataaa taaatatttc tatgacgagt gagtgcccat ttggacccat       540
     tcatgggcaa atcattaacg ataacaagaa aatgaataca agaatgagag tattgggtaa       600
     aactacgatt atccattaaa aaaaagtttt tattaatatt gtttaaacag tttttgttta       660
     aacaaattgc taaaaacagt gagattttca aaaactaata acgccattcg attttacgta       720
     aaaaattacg atggaagtgt gtcttaaaaa attataacat acaattgttt atttctttat       780
     tgtattgatt aaacaaattg cttctttcca cctaccttta aattacattg caaataaatc       840
     ttagagattg aaatttgtta ttggataata ttgagaattt tgtgaattgt ttcatattgg       900
     aagtaggaaa aagtttagat caattttatg aggtttagta cttcatttac tttattatta       960
     tagaatttat gcatccaatg tcatcagaat aagttttctt tgtttatgcg aggtttagag      1020
     tatttcattt gtttcagtat tataaaaaaa aggagttcta taaaatttgc ttattcgctg      1080
     tcagtataaa ttttcgtctt ttgctttgtt tcccatttgt ttcgttatta taatatcgag      1140
     ttaaataaca ttttggtttt taaaatagca aaagtttacg tgttttttac aagatttcgt      1200
     tcgtcattcg tttcagtatt atataatttg cgcatttaat gtcaaaataa gttttggttt      1260
     ttgttcaagg ttttcttagt ttttcatttg tttcagtatt atagaataat tgaattctat      1320
     acaattttca cattcgatat taaaataagt ttttgttttt tgttcgaggt ctagagtatt      1380
     ttatttgttt cagtattata aaaaaaggag ttctataaaa gcttattcgc tgccactata      1440
     aattttcgtc tttagcttcg tttccaattt gtttcggtat tgtgaaatcg agtttaatga      1500
     cattttggtt tttgaaatag gtaaaagttt acgtgttttt tacaaggttt cgttcttcat      1560
     tcgtttcagt attatataat ttgcgcattc aatgttaaaa taagttttgg tttttgttca      1620
     aggttttctt agtttttcat ttgtttatgt attatagaat taaattctat aaaattttcg      1680
     cattcgatgt taaaataagt ttttgtttgt tcttcgatgt ttagagtatt ttatttgtta      1740
     cagtattatg gaaataagtt ctataaaatt tgctaaatcg atgtcagatt aagtttttgt      1800
     ctttagttca atactttgtt ttttatttgt ttctgtatta tgaatattgc gggtttgatg      1860
     tcaggtaatt tttcgtccta tgttctatga tttaattaaa tgattaaaaa tttgtgtttt      1920
     actaaggcgt ttttactttt agttttatca attttttatt agaaatggaa aagtttgaaa      1980
     tttctaatag tgctttatgc aatatactgt tagaacctga aagtgataaa agcattaatg      2040
     ctctaataag ccacattaga cagcactatg atttggatga caaaactttt gtattagtag      2100
     agaaaaaact tgttcgatcc tttatgccta cttttaaatc aaagttttcc agtgttttat      2160
     ataacgaaaa tgtgtttaga aaaaaaaatg ctaagtggtt gtctcaacat ttctatgttg      2220
     cttttaatga ggatataaat gttggtggaa ggcctgttgt ggaagatttt aacaaaggat      2280
     cgagagccac aaagtataga aaaattcaaa cgattgcaga gagttattct ttcgaagaaa      2340
     ttcagaaagc tttttttaaa catttgcgtg actctggaaa ggaacattta atagcaaata      2400
     tagaaaattt gttatctgaa acttcaaaga gtgatcgaaa tacaaatgat cctatttctt      2460
     ttaccgaaga tgaatgtata tcccttatag aagatgcaaa gttgtcaaaa tggcaatacg      2520
     actctatacg aaaacaaatt tctgcaaaaa atgctgatat tttaattcct tatcaaaatc      2580
     tttcattagc aaaacagaaa tgttatcctt ctccagagca tataaccata accgataaaa      2640
     gtgctgatgt cgatttacaa gctcttttaa accatacatg caaacgcatt ttagaaattc      2700
     cacgtctgcg tgttaaagat aatttaattg gaaacaatac agaattgtca ttaactacga      2760
     tttcaaaatg gggatgtgat ggtgcatctg gtcatagccg ttataaacaa aaattttctg      2820
     atggaactac ttctgatgaa agcatttttg taacatcaat tgtgcctctt actttggtct      2880
     tgaataatgc aaatgcagtt aatcagaaag taatttggag taatgctcag cctggttcaa      2940
     ctagacattg tcgtgtcatt aattttgaat tcacaaaaga atctaaggaa acgataacaa      3000
     agaaagttaa tcagataaat gataagatta catttttgca gccaacaaca attgagacag      3060
     attctgttaa aattaaaata aatcactcct tgtatttaac aatgattgat gggaaagttg      3120
     cacaggcctt gactgatact ccttcttctg catcctgtgt catttgccaa gcaacatcct      3180
     cggaaatgaa taacttacaa aaattatctc ttaagacagt aaatgaagaa cattataaat      3240
     atggtctttc tagtctacat gcgtggataa ggtttatgga gtgtattctt catatagcat      3300
     atcgtttgga atttcgtagg tggtctgttc gatcagttga agataaacta aaagttaagg      3360
     aaacaacacg aaggatacag aaggaattta gagaaaaatc cggccttctc gtagactatc      3420
     caaaacaggg ttctggatca tctaacgatg gaaatactgc gagaagattt ttccgcgatc      3480
     cggaactgac agctgaaatt acgaaagttg atttgaaact aattgagaga tttggtataa      3540
     ttttgcaaac cctttcttgt ggaattaaag tagacgcaaa aaaatttgat gattatacta      3600
     aagaaacagc aaaattatat atgcaactct atgactggta ctatatgcct tcttctgtcc      3660
     acaagatcct atttcatggt tcagaaataa ttcagcactt ccttcttatt ccaataggaa      3720
     tcttgtcaga agaagcacaa gaatcgcgta acaaagacat taaacattac agagaattta      3780
     atactcgaaa gtgcagtaga atttctacaa acaccgattt attacataag ctactaatat      3840
     catctgaccc ttatatttca agccttcgat gtcaaccaaa atatcaaaag cacgttattg      3900
     attctcctgc aaaagactta ttagattact cataagaaac aaatttttag tttaattctt      3960
     taaagattga cgttaaaata tgttttaatt attaatgatt atgtttttat aatgaggatt      4020
     tgcaatactc gataattgtt tgctcatgga cctgaatggt ttaatctaat ttgtttataa      4080
     caattggatt attatatcaa cacttttttt tcatttttac aattttttac ataaatttca      4140
     tgcaatatat accacgaaag tataattttt agggagatat aagtaaaaaa tccaaaaatt      4200
     cctaatttgt ttaaacatta gaattgttaa ctaagttttt taaaaatcgg ctcccacaga      4260
     tctcttggaa attttataca gattatttaa aaaaaaaaag attg                       4304
//
ID   Transib-1_LMi repbase;    DNA;    INV; 3307 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3307
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3313-3313 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1340..2278
FT                 /product="Transib-1_LMi_1p"
FT                 /translation="MEFEKASDRSKRRKATDLRKSVSKLELSLATQMSLRS
FT                 SGASAAASILKEITTKSPSRANKYKAALKSSANPPVIKMSADEALSDMVEG
FT                 KLSKFQYMLIRNSMKSHNALIYPAYEKLVEAKARCYPSDIEITETRAEVSV
FT                 QALLNHTSERILRVQEDTIKTLSPETLKNAKLVLKWGFDGSSGHSEYKQKF
FT                 SDASDSDANVFITSLVPLQLVATDNLLQKEVMIWKNPSPSSPRFCRPLRLQ
FT                 FLHENVESTLNEKKYINEQIASLLPFQTVWDGKEIIIKFEMVFTMIDGKVC
FT                 NTITNTASSMRCYVCGATSKN"
XX
SQ   Sequence 3307 BP; 1073 A; 571 C; 642 G; 1021 T; 0 other;
     cacagtggtc tggatctgaa aaaaggtggc caaaaatcga aaaatgcgac tgtcagcgaa        60
     taggctggct accatagaat cttgtagtag aggctttggt gcatattact ctcaaaggaa       120
     agtgatatat ctttgatacc tgagatgcta cgtcagttca aagttactgt tttcggcata       180
     gcgttaacgt cgtgctgtct ctccgaaata ccaccactac taaaagtgcg tgtaactttt       240
     tactggagtg tcatatttta tttctgtttc atggagggta ctaaagaagg tatgtcgaat       300
     attggcatat ataatgtttt cgttaatttg tatttcttca tgtagtaaat catcgtcaaa       360
     tgtgtgtctg catattggtt atcctttcag aattatttac cgaaaattag caaaatagtt       420
     gtgtattcag cgttatttag gaatttccgg catatggcat atagcttatg gtgttttgta       480
     atggaatgtg aaagaaaatt ctgccccgat ctgcccctgt acttttgagg ttaaaaataa       540
     acagcaccgg gcacgttgag cagctttctt gataggctaa ggttgaccgc aaccatcact       600
     gttgcctttc tttttataac tgtaatacac aaaacggttg tgttactgta atatagcatt       660
     aaatatatat cacctgtgta actaacaatt cgaatcaagg ttatgttaca aatatggaag       720
     cgtgttggaa tgtggaaacg agtaatatct gctagatcta ctccagcgga gtaagcagga       780
     aatagcctag ttgtaatagt tcctgttttt aacggtagag agcactttct aatactacat       840
     tgcattatct gtattttaga ttcaccactg ataaaataat ttccactcgt cgagaactgt       900
     tcgacgttat acagaagaat ttgaactcgg acttggacac ccaactaaaa tgtttggagc       960
     aacatcttac gacaaattca aaaagctgtt gtcaaataat tgacgaaggg agaaaatctt      1020
     tgaaggcgtt tctgtccgca ctgaaatgga gatggaaaca gtctcgaaga acgactgaaa      1080
     ggtttcttcg aaataatgaa gattggcttt cttcttccat agttattaac gtgagtgttt      1140
     aaatttacac agaaatatcg attttggtaa tagttaatgt aaaaacctaa aataagattc      1200
     aaaattcctc acagtaatta cactatttac tccacagatt gtttcgacga ctaataaaac      1260
     atctaaagat tcgagtacag cgacaattag tacatcgata tcaaaatcca cggaatcgaa      1320
     gaagcgtggt cgaccaagta tggaattcga gaaagcaagc gacagaagca aaagaagaaa      1380
     agccactgat ttacgcaagt cagtaagcaa attggagtta tcgttggcta ctcaaatgag      1440
     ccttcgttct tctggcgcct ctgctgctgc aagtatttta aaagaaatca cgacaaagtc      1500
     accatcgcga gctaataaat acaaagcagc gttgaaatca tcagcaaatc ccccagtcat      1560
     taaaatgtct gccgatgagg cattgtctga tatggttgaa ggaaaattat ctaaatttca      1620
     gtatatgctt attagaaatt caatgaaaag tcacaatgct cttatctatc ccgcttacga      1680
     gaaacttgta gaagccaaag ctcggtgtta cccatctgat atagagataa ctgagacccg      1740
     tgctgaagtc agtgtacaag cgcttttgaa ccacacatca gaaaggattt tacgtgttca      1800
     ggaggacact atcaaaacat tatctccaga aactttaaaa aatgcgaagt tggttcttaa      1860
     atggggtttt gatggttctt cggggcacag tgagtacaaa caaaaatttt ctgatgcaag      1920
     tgattcggac gctaatgttt ttataacttc attggttcca ctgcaactag tagccacaga      1980
     taatttatta caaaaagaag tgatgatatg gaaaaatcct tcaccttcat cgcctcgttt      2040
     ttgtagacct ttaaggctac agtttttgca tgaaaatgta gagtctacgt taaacgagaa      2100
     gaaatacatt aacgagcaaa ttgcgtctct acttcctttt cagaccgttt gggacggaaa      2160
     agaaataata ataaagtttg aaatggtttt cacaatgatt gatggaaagg tctgtaacac      2220
     tataactaat actgcatcat ctatgcgctg ctatgtgtgt ggagcaacgt caaaaaatta      2280
     atgatctcaa ctttgtaaaa aatgtagtga ttaatgtttc taatttgcat tatggattat      2340
     caaccttgca cgcatggatt cgttgctttg agtatttgct tcaccttgga tacaaacttg      2400
     aaagtaaaac atggcagttg cgattaccgg aagacaaaaa gcgtttcgag attaggaaaa      2460
     aaacattcaa aaggcctttc aaacgcagct ggggcttctt gttgatcggc caaagttgga      2520
     tatgggaact ccaatgatgg aaatactgct cgtcgtttct gcacaaatcc tggggttgac      2580
     gaagatttca tcatgactgt tatcttgcag gaatgtcatg tggctataac gtgaacatcg      2640
     aaatttcagc gcgcgggggg aagccctggt attgcggtat tccaggaaag tcgcgcactg      2700
     gaagtgtatt tcatggctcc tagtatttct gatccactta tttcgagtct gagaaaaatg      2760
     aaaccagaaa aagtaaagat ttgtcaacgg acgctctaga gctttttttt tactgatgag      2820
     gagtccgaaa attttctaga agtttctgat aaacatgata ctgactttga tttcgaaaac      2880
     gataattatc ccgatattga cagtgagagc gactgatttt tattgtgttt tcctcgtata      2940
     ttttttaatt gtacatatta ctaccaatag ctggtacttc aaaaaatttc aaaataaaaa      3000
     ccaaagataa acaaactagt tttcttttgt aattgttata ttataatcgt gatttcccac      3060
     ttctaaatta gaaatcatta tgtagtattc gtaatcagaa acctcaaaga taattacata      3120
     cggattaaaa aaattcaaga attttgaatg aagaggtcag ccatattgaa tctgctatta      3180
     ggaattttga aattttaata cgaaattcgt aatcagcggc ctcaataacc cctatatacc      3240
     aattttcgtt caaatctaaa gattttttct atttttggcc aacttttgtg tgatctatac      3300
     cactgtg                                                                3307
//
ID   Transib-1_PPo repbase;    DNA;    INV; 1774 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; nonautonomous;
KW   Transib-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1774
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2753-2753 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 614bp TIRs. CGGCG TSDs.
CC   Classification is based on its terminal structures and TSDs.
XX
SQ   Sequence 1774 BP; 605 A; 289 C; 324 G; 556 T; 0 other;
     cacattgggc tgtatccagt cgctccatag acaactttat ctgatgtttg aaatgtctct        60
     tttttttgct tgaatgtgct ttgtatcagt aaatgcatac cttataacgt aatatttatc       120
     ttgtatcgat gtttttggcg caattagagc gttttctctg aaaatttgta tggagtcgcc       180
     ctcaaaattg gcgataactc agctatcgca caattgcgcc ttattttctc tgagattacg       240
     tttgtacaac ttgtaacgat ttttttggta tactattgga cacgggcacg ggtgcgattt       300
     ttgacttatt caaggtcaaa ggtcataaaa attacttttt cgcgtatttc agcggaatgg       360
     ttagctttat caaaaagttg actaggacga agttgtagat catgaaattg cctataaaat       420
     atccatacat acttttttca taagagccat agtttcagag atatagcgat ttgcacatcc       480
     aaattgttcc gattaatata cccgatactt taataactaa taatccctaa ccactggaac       540
     cagaggtttg aaattttgcg taaaagtttc tattactgtt ttagatgagc gctaagaaag       600
     gattttacga aaatcgtccc gtaaatgtcc aacgtggggg ttgaaatttg catggaaaga       660
     ttttcaagca aagtgacttg tcaaatcata actacaattt taaaaataaa aaaaattaat       720
     taaaggtagg acagaaaaag ttaataacga atgatacttt tgtattcgat gtaatattga       780
     tcttactaac ttaaaaaatt aacttattca ctagcagtag atacattttc ataattagtt       840
     tctgtttgta atgttaaaaa caaacaattg cagttgatta gtaagtgggg tttcgatgga       900
     gcatcgagtc agagtagaca caagcaaaga agggattttg aaaacgacga ttccagcatt       960
     ttcatgacgt tattagtgcc attaaaaatg acttgtgaag gagagtcaat ctggcagaat      1020
     cataaacttt gctcggccgc atattgtcgt cctgtacagt tcacttttgt taaagaaagt      1080
     aaagcagtgg taaaggaaga agaaagaaga ataaaaaatg aaatagcaga cctgaggcca      1140
     tcgaaatttg acagcaatat attttcgtaa aatcctttct tagcgctcat ctaaaacagt      1200
     aatagaaact tttacgcaaa atttcaaacc tctggttcca gtggttaggg attattagtt      1260
     attaaagtat cgggtatatt aatcggaaca atttggatgt gcaaatcgct atatctctga      1320
     aactatggct cttatgaaaa aagtatgtat ggatatttta taggcaattt catgatctac      1380
     aacttcgtcc tagtcaactt tttgataaag ctaaccattc cgctgaaata cgcgaaaaag      1440
     taatttttat gacctttgac cttgaataag tcaaaaatcg cacccgtgcc cgtgtccaat      1500
     agtataccaa aaaaatcgtt acaagttgta caaacgttat ctcagaggaa ataaggcgca      1560
     attgtgcgat agctgagtta tcgccaattt tgagggcgac tccatacaaa ttttcagaga      1620
     aaacgttcta attgcgccaa aaacatcgat acaagataaa tattacgtta taaggtatgc      1680
     atttactgat acaaagcaca ttcaagcaaa aaaaagagac atttcaaaca tcagataaag      1740
     ttgtctatgg agcaactgga tacagcccaa tgtg                                  1774
//
ID   Transib-1_SIn repbase;    DNA;    INV; 3682 BP.
XX
AC   .
XX
DT   31-DEC-2011 (Rel. 19.02, Created)
DT   30-DEC-2019 (Rel. 25.01, Last updated, Version 2)
XX
DE   Transib-type DNA transposon sequence - a consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-1_SIn.
XX
NM   Transib-1_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3682
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 350-350 (2014).
XX
DR   [2] (Consensus)
XX
CC   >95% identical to consensus. ~40bp TIR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1752..3119
FT                 /product="Transib-1_SIn_1p"
FT                 /translation="NSCGSQCTGTFKSYIRKNFTGSKGYHKNIISRNLKNA
FT                 KLILKWGYDGTSKRSEYKQKFIDENSTDANVFITSLVPLQPVSTDNFKKEV
FT                 VIWKNPTSSSSRFCRPIRLQFLHENVESILNEKKYIEDQIASLLPFEIIWD
FT                 GREVIIHYEMIFTMIDGKVCNAVTSTKSSMRCYLCGATSKQFNNLDLVKHK
FT                 EIDVSNLRYGLSTLHAWIRFFEYLLHLGYKLDSKKRQARSTEEKNAIENRK
FT                 KIIQKGFKTQLGLLVDRPKPGYGNTNDGNTARRFFEHSQISARILGLDENF
FT                 INRFHVILQVMSSGYNVNIEKFEKYCFDTAEMCVAKFPWYYMSTTVHKVLI
FT                 HGAQIIQSAVLPIGQLSEDAQEAKNKDIKKYREGFSRKISRVNTMADVFHW
FT                 LLVSSDPLISSTRQMVPKKSKKLSLEALELLLCPESENSIETNDNSDSDFD
FT                 FNDNDSDSDCD"
XX
SQ   Sequence 3682 BP; 1245 A; 603 C; 622 G; 1207 T; 5 other;
     gtggtctaga tctcgaaaaa ggtggccaaa aatgcaaaaa atgaaagtca taattatgaa        60
     tttagtatca tagaatcttg tagagaggtc actactncat gttattccaa agggaaagta       120
     acggttcttt tatacctgcg gtgctacatt agttcaaaag tgaccgttct cagaacacgt       180
     gaatcacgct gagcgcgtcc gaaatattcg acgttcttca agtgcgtata actttttatt       240
     ggagtgtctt ttctgaattc tgtttgatgg agggtattaa cgaagatatg tagaatattt       300
     acgtatattg ttttttttat gaatgtatac tcggcatgaa taaaaatcat gtcaaagtcc       360
     tacctgtaca attgcttctc ttataaaaac ttttaccgta aatcatcgaa aaagttatca       420
     cgccacgagg agctgcgaag gtgnnacatt gagcatatag cttaagatgt tttctaataa       480
     agttttgaag aaaattctgc ccatctctgc ccctgtcgtt gtaaggccat tctgaataca       540
     acgatgtcga gccggctgtt aggttaggtt cgacgctcag gcacgcagaa gggtcggcga       600
     ctacctgcct ttgaaaactn aatagtgaac gtcgactttt tattgctaag ataatttgaa       660
     tatatatacc gggcgtctta ttttaatgta tcgttgaatt ttcataaatt tttgcaatta       720
     attattcaaa taacgctcct caaaaatatt aaattgtata cataattttt cttatttcac       780
     aatttcaaat aatgcttatt ctgagagaaa aatctgttta tatttaatgc tacattatgt       840
     ctgtatttta ggatcgcgta ttgataaagt gatctgtact cgacgggaac ttttcgaggt       900
     tgtacggaat gattggcatt cgaacttaaa tacgcagctt ttatcagtgg aacaacattt       960
     tgctgcaaaa atgaaacgtt gtttcataat tcatttcgat gatcgaaaaa atgttaagga      1020
     tgtgttgtcc aaagttcaat cgagatggaa acgatgtcat agaacaatag aacgcttcct      1080
     taaatataat gaacagtggc tttcttcttc tatgactatt aatgtacgta tttcgaaatg      1140
     ttctcttaat attgttgaca ttgaaattta atanaggaat atatcacttt taattaaaat      1200
     ttttcaaaaa aacaaagtaa gatttaaaat tttttacaat aattcgatta tgtacttcag      1260
     tatgttagta caactaacga aaaacctgcg gattcgagta tggctacaac gagtacagcg      1320
     aaatccgcgg agtctaagaa acgtggtcga ccatctatga agttcgagga agcaagtaat      1380
     cgaaccaaga gaagaatagc cactgactta cataaatcac gaagcacatt agagttatcg      1440
     ttggctactg aaatgagcct tcgttcttct ggagcctcta gtgctgccag tattgtcaaa      1500
     gaaattacaa caacgtcacc aacgcgagct gataaataca gaacagcatt aaaattatcc      1560
     gcaacttccc gtattactat aatgtctggc gattctgcgc tttccgatgt cattgaagga      1620
     aagttatcca aacatcagta cttacttatt agaaaatcaa tgaaaaaaca taacgctctt      1680
     atatatcccg cttacgaaaa aattttagaa gctaaagttc gatgttaccc gaaagatatt      1740
     cagataactg aaactcgtgc ggaagtcagt gtacaggcac ttttaaatca tacatccgaa      1800
     agaattttac aggttcaaaa ggataccata aaaacattat ttccagaaat ttaaaaaatg      1860
     caaagttgat tttaaaatgg gggtacgatg gtacttcaaa gcgaagcgag tacaaacaaa      1920
     aatttattga tgaaaatagc acggacgcta atgtatttat tacttcgtta gttccattgc      1980
     aaccggtttc cacagataat tttaaaaagg aagtagtgat atggaaaaat ccgacgtctt      2040
     cgtcatctcg tttttgtaga cctataaggc tacaattttt acacgagaat gtagagtcta      2100
     ttttaaatga gaagaaatat attgaagatc aaattgcgtc tcttcttcct tttgaaatta      2160
     tttgggacgg aagagaagta ataatacatt acgaaatgat ttttactatg attgatggca      2220
     aagtatgtaa cgcggtaaca tctactaaat catctatgcg ctgttatttg tgcggagcaa      2280
     cgtcaaaaca atttaataac cttgatttag taaaacataa agaaattgac gtttctaatt      2340
     tacgttatgg attatcaact ttacacgcat ggatccgttt ctttgagtat ttgctgcatc      2400
     ttggatataa acttgacagt aaaaaacggc aagcgcgatc aacagaagag aaaaatgcaa      2460
     tcgagaatcg gaaaaaaata attcagaagg gatttaaaac acagctaggt cttcttgtgg      2520
     atcgtccaaa accaggctac ggcaacacca acgatggcaa tacggctcgt cgtttttttg      2580
     aacattcgca aatatctgct agaatcttag gattggacga aaatttcatt aatagatttc      2640
     acgttatctt gcaggtcatg tcaagtggat ataatgtaaa cattgaaaaa tttgaaaaat      2700
     attgttttga tactgcggaa atgtgtgtgg ccaagtttcc ttggtattac atgtccacga      2760
     cagttcacaa agttttaata catggagctc aaataattca atcagccgta ttgccaatcg      2820
     gtcaattatc cgaagatgcc caggaagcca aaaataagga cataaaaaaa tatcgtgaag      2880
     gattttctcg aaaaatttca cgcgtaaaca caatggcaga tgtgtttcac tggctcctgg      2940
     tatcttcgga tcctctaatt tcgagcacaa gacaaatggt acctaaaaaa agtaaaaagt      3000
     tatcattgga ggccttagaa cttctacttt gccctgaatc tgaaaattct atagaaacta      3060
     acgataattc tgattccgat tttgatttta atgataatga ttccgatagt gattgcgact      3120
     aatttaaaat ctaacttctt taaaatctaa aaaaattttt ttattttttt aatttttttt      3180
     ataaatcttc tttaaatatt tttaaccgtt ttaatctttt ttttaaattt gataattgtt      3240
     tcttaattat atttcataat aattgttact ctgcgaaaaa ttttgaaata aaaatcaact      3300
     atacatatat tgttcttaat ttcgcaattg taatcctata atcgtaatta gtaatcgtga      3360
     atactctgat acaccaattc atataaaatt tcgaacgatt tttattaaag tgttcggtga      3420
     tattagatcc gccattttaa attttgaaat tttcatatca aattcgttat cagcgacctc      3480
     gaaaaccctt atacactaat ttatataaaa ttacgaacaa tttttattaa agtggtcggc      3540
     catattagat ccgccatttt gaattttgaa attttcatat caaattcgtt atcagctacc      3600
     tcgaaaaccc ttatatattt tttttcgttt aaatctgaaa cctctttcta tttttggcca      3660
     gctttttcga gatctagacc ac                                               3682
//
ID   Transib-2N1B_FoCa repbase;    DNA;    INV; 1387 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-2_FoCa; Transib-2N1_FoCa; Transib-2N1B_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1387
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2483-2483 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs. 672/674-bp TIRs. It is
CC   similar (~91% identical) to Transib-2N1_FoCa, but older.
XX
SQ   Sequence 1387 BP; 397 A; 293 C; 296 G; 401 T; 0 other;
     cacacagcga aataatccaa aattttcgga aataattcca cgagcacatt tttaaagaaa        60
     tttttgcata ttccgagctc ttgggggcca aggccaaacc cataaaaaaa ttgaagagcc       120
     acgcccactt tgggtgtggt tttttcctag cagggttaga gcaaatgtca tgtctaaaat       180
     tgtagctcat cgatgtgcat ctccagtaaa aatttcatct aaatccgttc acaaacaaaa       240
     aagatattca atggcgaagc tcggcgacag tcaaaagacg acgactttag gggcgtggtt       300
     ctccgaaagg ggcaagtacc atactctgaa aatcattgta aattgtagtc cccaacggta       360
     tcaacgtatt ccaagaaaaa cggagatctg gaatctgccc ctttcaaagt tatagccccg       420
     ggaacattgg gaacattcat ggcgaaattg tccaaaaagg gtgaaatttg acatgacgta       480
     tcgcagtaaa aatcgatatc tagcttcagc gaggtctaaa aagtgggtcg caggtgaaat       540
     tgacccatgt cgtaagggaa ccatgtcgac gtgtcgaatt tcgacatgga gctagagagc       600
     tgaaatttaa cactaatact cccctcccct ccaaaataca tatgcaaaca cttttgatca       660
     tgtcgacacc ccatgtcgat agatatcgac ctttaaatgt gcgtgtcgac cacggggtgt       720
     cgacatgatc aaaagtgttt gcatatgtat tttggagggg aggggagtat tagtgttaaa       780
     tttcagctct ctagctccat gtcgaaattc gacatgtcga catggttccc ttacgacatg       840
     ggtcaatttc acctgcgacc cactttttag acctcgctga agctagatat cgatttttac       900
     tgcgatacgt catgtcaaat ttcacccttt ttggacaatt tcgccatgaa tgttcccaat       960
     gttcccgggg ctataacttt gaaaggggca gattccagat ctccgttttt cttggaatac      1020
     gttgataccg ttggggacta caatttacaa tgattttcag agtatggtac ttgccccttt      1080
     cggagaacca cgcccctaaa gtcgtcgtct tttgactgtc gccgagcttc gccattgaat      1140
     tcttttttgt ttgtgaacgg atttagatga aatttttact ggagatgtac aatcgcatga      1200
     gctacaattt tagatatgac atttggctct aaccctgcta ggaaaaaacc acacccaaag      1260
     tgggcgtggc tcttcaattt ttttatgggt ttggccttgg cccccaagag ctcggaatat      1320
     gcaaaaattt ctttaaaaat gtgctcgtgg aattatttcc gaaaattttg gattatttcg      1380
     ctgtgtg                                                                1387
//
ID   Transib-2N1_DTa repbase;    DNA;    INV; 1334 BP.
XX
AC   .
XX
DT   07-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-2_DTa; Transib-2N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1334
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6214-6214 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1334 BP; 453 A; 206 C; 243 G; 432 T; 0 other;
     cactatgggc aaaaaattcg aaagtgaggc atttttaaat ttttttgttc ttcagtatta        60
     cataaatgac cttctgtggt tatttacaat acttaaagga acctaaaatc cattttcaaa       120
     gaattttatt tggcgttttt cgctattttt tcccttaaga aattcgaaag tttgaaatag       180
     ggtcacacgt ttacaaaaag ggacgaaaaa ctttgtagtt ttcacacctc gatttctttg       240
     gttattgtaa gccaaccaaa aaagtttaaa tatggataca aagagtgaag gattgttaaa       300
     taaattataa acactgaatg tttattatat gtgctttttg tccatttgtt tgatgagttg       360
     tcgcttagtt tttagatgac aaataagaaa tgtatttttg ctttctgtgg agtgtaagat       420
     gtgagtatag gagagtatag gcaaggtaaa aataggaagt tataaacaaa acaattgcta       480
     atcgaaccct atcaatactt tttgcacgtt tttgcacgtt atacgtaaaa cctccatgtt       540
     gtagttgcat tcgagttctg tcactacaca ttgcttaatg tttgtatcgg caacaaccgg       600
     caacaaaccg ctgtgatgga atttgttttg caaactatga acggaatcga attaagcgat       660
     agtcagcaca caatagtcaa aaaaaaatta agcagattgt tgcctttttt agtcgtaatt       720
     tgccaaaatg tcatagaata atagaccgat tcaaggaaga acatttcctg cggctttcgt       780
     cgaacatgaa aatttcattt ttggaaaagg gcttgccaag cgacaaacct ggtcgcaaat       840
     gcctaacttc taatgaggca ggaccacgat taaagcgtaa ggtggcatct caattggcga       900
     aagaaaaaga aaattcgatg ccattaattt ggcatggtgc ttctttttgg caaaaaatat       960
     caaacaagaa gatacttcag ttttgttgcg aaaggcgtta aatatgaaat atttattaac      1020
     aaattcattt tttttatatc cttgccttta aaagtaaata tgcggcgttg gcggttgatg      1080
     gagacttggt ccaattcaaa atttaacaaa aacagaaatt gtattacagt taccaacaca      1140
     aacaacattt tctttaaatc cttgccttca aatgtatatc tgcggcgtgg gcgtaggatg      1200
     aatatgtggt ccgattcaaa aagcaacaaa aaccgaaatt acatcttagc cttaaaagta      1260
     tataacaaaa attttagatt tgtatcttta aaactggagt ttatgcctca aggactgaat      1320
     atttgcccat agtg                                                        1334
//
ID   Transib-2N1_FoCa repbase;    DNA;    INV; 1323 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-2_FoCa; Transib-2N1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-1323
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2497-2497 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs. 597-bp TIRs. It is an
CC   internally deletive derivative of Transib-2_FoCa.
XX
SQ   Sequence 1323 BP; 385 A; 286 C; 270 G; 382 T; 0 other;
     cacagagcga aataatccaa aattatcgga aacaattcca cgagcacttt tttaatgaaa        60
     tttttgcgta ctccgagttg ttgagggtga aggccaaaca tataaaaaaa ttgacgagcc       120
     acgcccactt tgggtgtggt tttttcctgg tagggttaga gccaaatggc atatcaaaag       180
     ttgtagctca tgcgatggta catctgcagt aaaaatttca tctaaatccg ttcacaaaca       240
     acaaagatat ccaatggcga aactcggcga cagtcaaaat gcgacgactt taggggcgtg       300
     gttctccgaa aggggcaagt acaatactct gaaaattatt gtaaattgta gtccccactg       360
     atcttaacga attccaagaa aaacggagat cttgattctg cccctttcca agctataagc       420
     ccgggaacat tgggaacatt catggcgaaa ttgtccaaaa agggtgaaat ttgacatgtc       480
     gtatcgcagt aaaaatcgat atctagcttc agccaggtct aaaaagtgcg tcgcaggtga       540
     aatttaccca tgtcgtcagg gaagcatgtc gacgtgtcga aatttcgaca tggagctaga       600
     gaggtgaaat ttaaaactaa tactcccctg ccctccaaac tacatatgca aacacttttg       660
     atcatgtcga cacgccattt cgatagaaat cgacctttta atgtccaagt tttaatgtcc       720
     aactctagct ccatgtcgaa atttcgacac gtcgacatgc ttccctgacg acatgggtca       780
     atttcacctg cgacgcactt tttagacctg gctgaagcta gatatcgatt tttactgcga       840
     tacgacatgt caaatttcac cctttttgga caatttcgcc atgaatgttc ccaatgttcc       900
     cgggcttata gcttggaaag gggcagaatc aagatctccg tttttcttgg aattcgttaa       960
     gatcagtggg gactacaatt tacaataatt ttcagagtat tgtacttgcc cctttcggag      1020
     aaccacgccc ctaaagtcgt cgcattttga ctgtcgccga gtttcgccat tggatatctt      1080
     tgttgtttgt gaacggattt agatgaaatt tttactgcag atgtaccatc gcatgagcta      1140
     caacttttga tatgccattt ggctctaacc ctaccaggaa aaaaccacac ccaaagtggg      1200
     cgtggctcgt caattttttt atatgtttgg ccttcaccct caacaactcg gagtacgcaa      1260
     aaatttcatt aaaaaagtgc tcgtggaatt gtttccgata attttggatt atttcgctct      1320
     gtg                                                                    1323
//
ID   Transib-2_CoFl repbase;    DNA;    INV; 4856 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-4856
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2114-2114 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp, CG-rich TSDs. 338/339-bp TIRs.
CC   The exon-intron structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1183..1720,2713..3300,3735..4146,4235..4409)
FT                 /product="Transib-2_CoFl_1p"
FT                 /translation="MPNSNKHKKRLQGRPKKVARGLHNSGRKSIDVDKASY
FT                 STKYRRALEILNDASNDAEVIEIAARLAKKKNLNKGDNPSEMKTDDQSEIR
FT                 HTKESALAFYLDGDYSKDSYSKLVSDSHARNCRIYPNYKEILTAKMDCKPM
FT                 NYIISEINVKVCLQDLLSKTAERLCEAVALNWEDMHLVDLELLVTIGFDSS
FT                 SGHVNPQQHYENKHNISYDPHQSLFVSHCTVIKLESSVDSREYWINPTPAS
FT                 IRFCRPIRISFEKEDSTSINQEIKSLRDQIQNLTKHKFRMSNDKMVNVKFN
FT                 VKQTMFDGKALNFIVNNNSSQRCPMCYMTTREFSNMKNNFTPKEENLSYGM
FT                 GLLHCEIKCFEYCTKLAHRIPVKQWDVTANVKEAIEKQKKIVQKKLYEALH
FT                 IRTDQIIQGHGTTNTGNVARTCFEDPRIFAEAIGIDSTLVCNIATIITAFK
FT                 CKKPLDLDKLEEFCLKTYKLNYKLYKWSRLSPSVHKLLMHGCAIARKFPMP
FT                 MVYFSEDACESWHKYYRYFFSNRARQDSRSHRIEDMFNRAMYLSDPLISMI
FT                 NIDKRRNECNVKPLSKEVEKFVV*"
XX
SQ   Sequence 4856 BP; 1772 A; 693 C; 743 G; 1647 T; 1 other;
     cacagtgggg tatttttttt tttttttcaa aatcaaatat ctgaagaacg gattaagata        60
     gaatgataat ttttgttgaa gcatactcgt aagttgatgt ggaatacgag aaaaacattt       120
     ataagagaat tttttttttc taacctccaa attttacaaa aaaacacgat ttttttcaga       180
     aaaacgtata aaactgtttt aaatttaacc aacttctcac ttcagtctgc ataaagctgt       240
     ttgatatgag accataggat gtaagtggct atattatcta aatatgacta tctttaaatg       300
     ttcaacataa cctcaaaaca gcaaagagcg atgtatttcg gttttttttt ttcaaaatca       360
     aatatctgaa gaacggatta agatagaatg ataatttttg ttggagcata ctcgtaagtt       420
     gatgtggaat acgagaaaaa catttataaa agattttttt ttccaacctc caaattttac       480
     aaaaaaaaca cgattataaa aagtattatt ttttatgaca gagcaataaa aacttaatgt       540
     atttaaaatc ttacataata actaatcgca gataaatagg tattatttac taattattta       600
     attaaaaaac ttttttttcc aagtccataa aatactaata ttatataata ttacgtttat       660
     ttagtacttt aataaaacgt gtatataaaa atataagtta gaaaaagttt tgaaccatat       720
     acctaaactg acaccacgct aatagcgttt aatttaattt caaacccata tgattatact       780
     tgtatacata gttacatcag ttgagaaaga ttgtaacttc gtaagaattt aagcaactga       840
     ggacaaaagt tattgtaaat taatcaaccg agtaatgtta aaactcacca attaattaag       900
     gtatgtatgt ctcactgaaa tagttgttta ttgcatttat aatgtatttt aaaatctact       960
     ataaaactct actaaaactt ttatcaattt gattatgtag tatcactttt ataaaggttt      1020
     ataattaact gttataatta actttcattt tattcattta attggcaatc ggactaacgt      1080
     acactgaaaa gttttatttt cattttaaaa taacgtaaac ttttgggatt tcttatattc      1140
     atacgtgttt gtattttgat agatttttca agttattcta aaatgccaaa tagtaataaa      1200
     cataagaaaa gactacaagg ccgtccaaaa aaggtagcga gaggtcttca taattctggg      1260
     agaaaaagta ttgatgttga taaagcgtcc tatagtacaa aatatcgtcg tgctttagag      1320
     attttaaatg atgcaagtaa tgatgcagaa gtaatagaaa ttgctgctcg attggcaaaa      1380
     aagaagaatc tcaacaaggg agataatcca agtgaaatga aaactgacga tcagtccgaa      1440
     atacgtcaca caaaagaatc agccttagct ttctatttgg atggagacta ttccaaagat      1500
     tcttatagta aactcgtttc cgacagtcac gcacgaaatt gtcgtatata tcctaactac      1560
     aaggagattt taaccgcaaa aatggattgt aagcctatga attacataat atccgaaatt      1620
     aacgtaaaag tctgtcttca ggatcttctt agtaaaacag ctgagcgctt gtgcgaagcc      1680
     gtagcattga attgggaaga tatgcacctt gtcgacttag gtatcatttt cattttcaat      1740
     atgcatcaaa aatatattcg tttagctcag tcgtacccta cgcgggtata catttacgag      1800
     acaaatattg ttattaggtg tgtagggaca tttttttgtt gcgtaattag tcctgatgct      1860
     gaagaggtct ttgtagccat tgggcactta aaaaggaaac ttaaccttat tttatgtaat      1920
     gttgtgtgta tgatctgaaa tatttgggtt ccaagccgaa ttatttgttt catgtaatta      1980
     tttaaacgaa ataactaaaa attataaatc tagtgagaat tttataaatg ttttaataga      2040
     agctggacag atttcttttt gttttggaaa acctacagtt cttctgttat atattcacga      2100
     aatttgaaat actgcctttt aaaaaaaatt caatcgcttg ttaaacaatt gtaatacaat      2160
     ttctttccat cctgtgattg cctaatattt ttcttaaatt tttcactttt gagagacatt      2220
     accatatatc tgataaacat ataacatatt aatcaagtta gagtcatata ttgattaagt      2280
     aaagcttaca catagatcaa agacccccct ttagcgtcag ggctacatta cagtaggcta      2340
     agtattaaat ttcttaaaca tttcaattaa agttagttta taaacgtcca cgtattctat      2400
     gaacaggtga ggatgctctc ggtgatgtat tgattttatt tcaaatccac ttattttttt      2460
     tcttggttac cacagtcagt gctattattt taaaaaattt taatgtgtgg tcctgaagtc      2520
     atgaaactat aatgacgtac attaattatt atcaattttt aaaaacatat tcatggacta      2580
     acttgaaatg tttatatttg ttatgagcta catgatggaa taagttccag ccatttccga      2640
     aatgtaaatt taaagagttt ttcagacatt attataattt ggatggtaat tgaaaatttt      2700
     tttttacaac agaattatta gtaactattg gttttgatag ttcctccggg cacgttaatc      2760
     cacagcaaca ttatgagaac aaacacaata ttagctatga tccacatcaa tcgttatttg      2820
     tttctcattg tacagttata aagttggaaa gttcagttga cagcagagaa tattggatta      2880
     atccaactcc tgcaagcata cgcttttgta gacctataag aatatcgttt gagaaagaag      2940
     attctacgtc tatcaatcaa gagattaaga gccttcggga tcagatacaa aatcttacaa      3000
     aacataaatt cagaatgtct aatgataaga tggttaatgt gaaattcaat gttaaacaga      3060
     caatgtttga cggaaaagcc cttaatttta tagttaataa taactctagt caacgttgtc      3120
     caatgtgcta tatgacaact cgcgaattta gtaacatgaa gaataatttc actccaaagg      3180
     aggaaaacct ttcatatgga atgggtttgc ttcactgtga aataaaatgt tttgaatatt      3240
     gcacaaaact tgctcacaga attccagtta aacaatggga tgtaacagct aatgttaaag      3300
     gtatttgatg tgaattgcta tatagtctaa ggtagtagtg gggcaattta tatactctct      3360
     aaattgaatc aataaaattt tactgattca ccaatgaaca tagtcactgg tgattaagta      3420
     aaactactga caagacttta attggaaatt gatgcctgat cagtaagata aattcaaaaa      3480
     ttcaaaaacc agttatcatt tttgtaagct ataaaactga ataacgaaaa aactgaagct      3540
     caagaatctt ataacccaat agactaagat acaatacccc ttaacacggc aagtttgtag      3600
     tcgtttttgt aattaacaaa tctagcgaaa tatcaattca aaattttttt aaccctactt      3660
     ctaccttaaa aattaaacac aattaagcat gtagtaataa aagtaatata atttatttta      3720
     aatgttaaaa atagaagcta ttgaaaagca aaagaagata gtgcaaaaaa aattatatga      3780
     agctttgcat atacgaactg atcaaataat ccaaggccac ggaacaacga atacaggtaa      3840
     tgtagctcgt acgtgttttg aagatccaag aatttttgct gaagctatag ggatagatag      3900
     taccctcgtm tgcaatatcg ctaccataat tactgctttt aaatgcaaga aacctttaga      3960
     tcttgataaa ttagaagagt tttgcttgaa aacgtataaa ttaaactaca aattgtataa      4020
     atggtcaaga ctaagccctt cggtacacaa attacttatg catgggtgcg caatagcgag      4080
     aaaattccca atgcctatgg tctacttctc agaagatgca tgtgaatcat ggcacaaata      4140
     ttataggtag tgtattacta aagtatccaa actttaagct gtaatattat gcagatgaca      4200
     attattatga gatttaatat caaaattatt ttagatattt tttctcaaat cgtgccagac      4260
     aagacagcag aagtcatcgt atcgaagaca tgtttaatag ggccatgtat ctatccgatc      4320
     ctcttatctc aatgataaat attgacaaaa ggagaaatga atgcaatgtg aaacctcttt      4380
     caaaagaggt cgaaaaattt gtagtgtaat aaaatggaac acaaaaaaaa ctaaaccctt      4440
     tatatgttat tgttatggtt gatccaaatt cacgttttta acttttattg gtgggaaaga      4500
     tataggattt tttatcaaaa tacatcgctc tttgctgttt tgaggttatg ttgaacattt      4560
     aaaggtagtc atatttagat aatatagcca cttacatcct atggtctcat atcaaacagc      4620
     tttatgcaga ctgaagtgag aagttggtta aatttaaaac agttttatac gtttttctga      4680
     aaaaaatcgt gtttttttgt aaaatttgga ggttagaaaa aaaaattctc ttataaatgt      4740
     ttttctcgta ttccacatca acttacgagt atgctccaac aaaaattatc attctatctt      4800
     aatccgttct tcagatattt gattttgaaa aaaaaaaaaa aaaatacccc actgtg          4856
//
ID   Transib-2_DAn repbase;    DNA;    INV; 2921 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2921
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 278-278 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 45-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           676..2643
FT                 /product="Transib-2_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MKKIKSFDIYISQKLAKYNRNVTRFKENKADWLNSKM
FT                 IIEFSVTSSPSSIQNVKRGRPQMSYEHGGKRLKHKLASNLANCEDNNTSLL
FT                 LHAAAVSAKKANEKDIVCVLKNSVLSENGAKEAKRKLFVPEPVPLTPDEAL
FT                 AFILENSLSKSQYKNIRDTNSTHLSDIYPPYDKVVKAKLDCRPEDIIVTEV
FT                 SCKVTLQNLLNHTASRILQMQEDVLRSFKSIKDLILIVSYGFDGSTGQSIY
FT                 KQKFNDHEPVSSDHSLFVTTIIPLTLKDNIGTILWMNRTPQSVRFCRPLKL
FT                 EFKKETSEHILSEKKDLDEQIKSLSPFVHQITDDQTVLVSFDLHMTLIDGK
FT                 VLNVLTNTNSCQKCPVCGSGPKQFLEIHDIHSPTFKPKPESLQYGVSPLHA
FT                 WIRFFEFLLNISSRIHICKWQIRDGNDKLIMAATKREIQERMRREMGLNVD
FT                 KPKQNGSGNTNDGNTARMAFKNVELLAEILKMDFDILNRFKIILITISCEL
FT                 SVNADKFQDFCDITFKLYLEKYRWYPMSPTVHKILVHGADIMNNSVVPVGC
FT                 LGESASEARNKFYKIYRRSHARQNSRLNNIMDVFQRSMDSSDPLLSSLHLN
FT                 KRLKKNKSKNLPHEVIELLEIPIIPSNLTSCNTTEDEQNNSSSDSNNSFLF
FT                 ELDAEES"
XX
SQ   Sequence 2921 BP; 1024 A; 487 C; 532 G; 878 T; 0 other;
     cacagtggcc ggattgaccg atttttttgc ataaattcaa aaaatttatg acaaaataat        60
     cgaatattgt ctatagattc taaaagtaga ttgtccaact agatgtaaac aaataatttt       120
     atatgaatat gtgcaatcct gagcttatac gagggctgca aagttcatta accgatcagc       180
     tggttatcgg acaaattttg gcgggaatct gcacacagac tttaaacttg cctcgtttta       240
     taatacaagc accaatttta cccaaaaaaa atggaaaata ttattaatgg tatgtaaaat       300
     ataatataga gaatccgatt cgtaatcagt gttacgtgtt ttttctgtga attgttttcg       360
     tgatgtccta aaatactaaa attttattca aagtgtctgt gtattatgga gtataactaa       420
     ttttctgtca ctttctgtca ccatctgagc ttgcagaagt gttaatgtat atttaatctt       480
     tacaacgtaa ttaaatactt ttgctccttt ttgctccttt ttctaccgtt gtcagttaaa       540
     gacaaggtcg agttcagtca cagcacactt tttgaggttt ggcagcgtag caataaaagc       600
     aaagatgcgg tatttgacta cattttggaa aaacttggca cgcaaaatct tgactccgaa       660
     gatattcaga acattatgaa aaaaataaaa tcttttgata tatatattag ccaaaaacta       720
     gctaaatata ataggaatgt aactcgcttt aaagaaaata aggctgattg gctcaattct       780
     aaaatgataa ttgaattcag tgtgacaagt tcaccttcaa gcatccaaaa tgtgaaacgg       840
     ggaagaccac aaatgagcta tgaacatgga ggtaaacgtc taaaacataa attggcatct       900
     aacctagcca actgtgagga taataacaca agtttgttgc tgcacgcagc tgcagtttca       960
     gcaaagaaag cgaatgaaaa agacattgta tgtgttttaa agaattccgt tctatcggaa      1020
     aatggagcaa aagaggcaaa acgaaaacta tttgtaccag agccagtacc cctaactcct      1080
     gacgaagctt tggcatttat cctagaaaat tctttgagta aatctcaata taaaaatata      1140
     cgagacacaa atagtactca cttatctgat atatatccgc cttatgacaa ggttgtgaaa      1200
     gcgaagctgg attgtaggcc tgaggatata atagttaccg aagtttcatg taaagttact      1260
     ctgcaaaact tgctcaacca cactgcaagc agaatactac aaatgcagga agatgtactc      1320
     aggtccttta aatcgatcaa agatctgatt ttaattgtaa gctatgggtt tgacggatct      1380
     actgggcaaa gcatatataa gcagaaattc aatgatcatg aaccggtttc aagcgatcat      1440
     tcattgtttg tcacaaccat aattccactt acattaaagg ataatattgg tacaatattg      1500
     tggatgaacc ggacaccaca gtctgtaagg ttttgcagac cattaaaatt ggaatttaaa      1560
     aaagaaactt cagaacatat tctctcagaa aaaaaagatt tagatgaaca aataaaaagt      1620
     ttgtctcctt ttgtacatca aattactgat gaccaaacag ttttggtttc atttgatctt      1680
     catatgacgc tgattgatgg taaagtgctt aatgttttaa ccaacacaaa ctcttgccaa      1740
     aaatgtcctg tatgcggcag cggcccaaag cagtttttgg agattcatga catacattca      1800
     ccaacattta agccgaaacc tgaaagcctt caatatggtg tgagcccact gcatgcatgg      1860
     attcgatttt ttgagtttct cttgaacatt tcgtccagaa ttcatatttg caagtggcaa      1920
     attcgagatg gaaatgataa attaataatg gcagctacaa agagggaaat tcaggagcga      1980
     atgcgaaggg aaatggggct aaatgttgat aagccaaaac aaaatggtag cggaaacaca      2040
     aatgatggaa acacggccag aatggcgttc aaaaatgtcg aattattggc agaaattcta      2100
     aagatggatt ttgatatttt aaatcgtttt aaaattattc ttataaccat atcctgtgaa      2160
     ctttcagtta atgcagacaa gtttcaagac ttctgtgata ttacatttaa attgtattta      2220
     gaaaagtatc ggtggtaccc aatgtcacct acggttcaca aaattcttgt acacggtgca      2280
     gatattatga ataattcagt agtacctgtt ggctgtctag gcgaaagtgc atcagaggca      2340
     cggaataaat tttataagat ttataggcga tctcacgcaa gacagaattc gaggctgaac      2400
     aacataatgg atgtgttcca aaggtccatg gactcctctg atcctttatt gtccagccta      2460
     catctgaaca aaagattaaa gaaaaataaa agtaaaaatc taccacacga agttattgaa      2520
     cttttggaaa tccctataat tccttcaaat ttaaccagct gtaatacgac tgaagatgaa      2580
     caaaacaact ccagttccga ctcaaataat tcattcttat tcgaactgga tgcggaagaa      2640
     agttaaaaaa acaggcacaa taatatttta tagttatcag attaaaaaca ataataaatt      2700
     taacaacaat atatatgaaa tgtacttctt ttactatcca tgcttacatg gggtttgttc      2760
     gaatttatgg atttgggggc ggcaagtgtg ggcatggcca gatcgaattc aaattttggc      2820
     tataattttt tggtgatctt attatcaaat gtgccaagtt acaactctgt aggatcatta      2880
     ttggatttta tgcaaaaaaa tcggccattt cggccactgt g                          2921
//
ID   Transib-2_DBi repbase;    DNA;    INV; 6593 BP.
XX
AC   .
XX
DT   16-DEC-2011 (Rel. 17.06, Created)
DT   16-DEC-2011 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-2_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-6593
RA   Jurka J.;
RT   "DNA transposons from fruit flies.";
RL   Repbase Reports 12(6), 735-735 (2012).
XX
DR   [1] (Consensus)
XX
CC   >98% identical to consensus.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1030..2289,4143..4670,4705..6177)
FT                 /product="Transib-2_DBi_1p"
FT                 /translation="MNEPIPISPDSALAFFIENGFTKKQYLNIRALNKQQG
FT                 CDIFPSYNQIAESKLKCRPLEIKICETKAEVSFQNLLDHTAHRILEMQQEV
FT                 FDIWPDATECTLIVSYGFDGSTGHSTYKQRFQLNESVGLDHSLFVTTVIPL
FT                 KLIDQHHRVIWINRTPQSVRFCRPLKIEFVKESTALILKEKKNLDVEIENL
FT                 NVLSYSYKSNIITVKYQTHMTLIDGKVLNIVTGTNSCQSCPLCGAKPTQLL
FT                 KTTDFNSPIFNVKSENLKYGVSPLHAWIRFMEFPLRISYRIEVKKWHVKGD
FT                 EKLKVSLRRKRIQEKLWIELGLNVDTPKQNGSCNSNDGNTARRTFSTSLKF
FT                 SAILDLDFKLIYNFYIILIAISSEHIITHFIVPVGVLGENASEARNKLYKS
FT                 DRKSHARKCSRLANIEDVFHFSLQFVQXTIKSILSNGFCPFLPLFEKTIHV
FT                 AGVYEFSHAALLEVWEESNRKDDAVRGFVIKRITESDRIDLSEEHMGEILN
FT                 KVKYFINYVKRNLPKCNRMLGRFKSVHSRWLGSKMVIRIDKQPVTLKTGRK
FT                 KSNYEDAGPRLKRKLASELASEEAHSTSLLLHAASVSAKSLRNQKSPFYFK
FT                 KKLNMNEPIPISPDSALAFFIENGFTKQQYLNIRALNKQQGCDIFPSYNQI
FT                 AESKLKCRPLEIKICETKAEVSFQNLLDHTAHRILEMQQEVFDIWPDATEC
FT                 TLIVSYGFDGSTGHSTYKQRFQLNESVGLDHSLFVTTVIPLKLIDQHHRVI
FT                 WINRTPQSVRFCRPLKIEFVKESTALILKEKKNLDVEIENLNVLSYSYKSN
FT                 IITVKYQTHMTLIDGKVLNIVTGTNSCQSRPLCGAKPTQLLKTTDFNSPIF
FT                 NVKSENLKYGVSPLHAWIRFMEFALRISYRIEVKKWHVKGDEKLKVSLRKK
FT                 SIQEKLWIELGLNVDTPKQNGSGNSNDGNTARRAFSNSLKFSAILDLDYKL
FT                 IYNFYIILIAISSEHIIDSEKFKYLCNNTFNLYMKLYSWYPMSPTVHKILV
FT                 HGHQIITHFIVPVGVLGENASEARNKLYKSDRKSHARKCSRLANIEDVFHR
FT                 ALDSSDPFLSTICLKEREKKIQKGPSQRSH"
XX
SQ   Sequence 6593 BP; 2299 A; 1039 C; 1205 G; 2047 T; 3 other;
     gcactatggt ccaaaagccc aaatttttgg cataaatgat attttttttg tgaaataatt        60
     tatttttgtt taattttttg gtttctataa tactgaaatg atataaaaaa attttggaaa       120
     gattttttcg gaatgcccct aatcttctgc gcgcttttaa agtcagctgt tcagtgtcgt       180
     tatgttttgg ctaaaaaacg cgggaaaatt ttcataactt gcagctagtg antcaattaa       240
     agcgaacatt caaagctaaa agtgtcttaa tggaaaataa aggtcaaggt atgtaaattt       300
     ataatttcta aactttttac tatatttata catgtttgtg ttgttttgtc caatgtgttg       360
     caagtgtgtt gttctaggtt attctaacaa aagtacacgt gttctgttaa agttttcttt       420
     taagtgcctc caagtgcctt gaaggtaata tattaatgtt tttaacaaat tactataaaa       480
     tcaattttaa gtaatggttt tcgcccgttt ttgccccttt tcgaaaaaac aatacatgtt       540
     gcaggtgttt atgagttttc tcatgcagcg ctcctcgaag tttgggagga gagcaaccgg       600
     aaagacgacg ctgttagagg ttttgttata aaacgaataa cagaaagcga caggattgac       660
     ctttctgaag agcatatggg ggaaatacta aataaagtta agtatttcat taactatgtt       720
     aagagaaact taccgaaatg caatcgtatg ttagggcgtt ttaaatcagt tcactcacga       780
     tggcttggtt caaaaatggt tatacgcatt gacaagcaac cagtcacttt gaaaactggg       840
     agaaaaaagt cgaattatga agatgcagga cgtcgcctta aaagaaaatt agcatctgag       900
     ctggcttcag aagaagctca ttcaacttct ctccttttac acgctgcctc agtttcagaa       960
     agctaaaagc agtgaagaaa gctaaaagca gtgaagacat aaatgattta aaaaaaaaaa      1020
     aaacttaata tgaatgagcc gattccaata agtcctgata gtgcactggc attttttatt      1080
     gaaaatggat ttacaaagaa gcaatatttg aatataagag cactaaataa gcaacaagga      1140
     tgtgatattt tcccttcata taatcaaatc gccgaatcca aattgaaatg cagaccactg      1200
     gaaattaaaa tctgtgaaac gaaagcggaa gtctcattcc aaaatttgct agatcataca      1260
     gctcaccgca tacttgaaat gcaacaggaa gtttttgata tttggccaga tgcaacagaa      1320
     tgcactttaa ttgtgagcta tgggttcgat gggtctactg gacacagcac atataagcaa      1380
     agatttcaat tgaatgaatc tgttggctta gatcattcgc tttttgtcac cactgttata      1440
     ccgttaaagc taatagatca gcatcatcgg gttatttgga ttaataggac tccacagtca      1500
     gtgagatttt gtcgaccttt gaaaattgag ttcgtgaagg aaagtactgc actgatttta      1560
     aaagagaaaa aaaatctgga cgtggaaata gaaaacctaa acgtattatc ttatagctac      1620
     aaaagcaata taataactgt aaaataccaa actcatatga ctttaatcga tggtaaggtc      1680
     ttaaacattg taaccggaac caattcgtgt caatcatgtc cgttatgtgg tgcaaagcct      1740
     actcaattgc ttaaaacaac tgattttaac tcgccgattt ttaatgtgaa atcagaaaat      1800
     ttaaaatatg gagtgagtcc gctacatgca tggatacggt ttatggagtt tcctctgcga      1860
     atttcctata gaattgaagt aaagaaatgg cacgtgaaag gagatgaaaa gcttaaagta      1920
     tccttgcgta gaaaacgtat tcaagagaag ttgtggattg agcttggcct taatgtagat      1980
     acaccaaaac aaaatggaag ctgtaatagc aatgacggaa ataccgcaag acggacattc      2040
     tcaactagtc taaaattttc ggctatcttg gatttggatt ttaaactcat ctataatttt      2100
     tatattattt taatagctat ttcttctgag catattataa cccattttat tgttccagtt      2160
     ggtgtgcttg gagaaaatgc atctgaagcg cgaaacaaat tatacaagag cgatcgaaag      2220
     tctcatgcca gaaaatgcag ccgattagca aatattgaag acgtctttca tttctctcta      2280
     caatttgttt gaaagaaagg gaaaaaaaaa tctaaaaagg tccttcccaa agaagtcatt      2340
     gatctactcg atgttcctga tccagagcta tatatgaccg gaaagtcgga tggagaaaca      2400
     gacgaagaag attttttttg tttagataat attattttgg attcagaaat tgaaaacgaa      2460
     aattagttta ataaaaaata atgataaaaa tatattttat aaatgtatta gcgttttcat      2520
     ttgtgttgat tttggggttg tatataagac gactttacta tttataccaa taaatacgac      2580
     atatgtgtaa ttttgtttat atcggttgta ttgttggggg aaggcgtggt cagaataaca      2640
     caaaattttt tttgaaattc aattttatcc tccctgatat tcgtgcaaat tttcagaatc      2700
     ttacgatcat ttttagagtt tatgccaaaa atttggccct ttggaccata gtgcggtggc      2760
     agcgtttatc cgaggtagtc ataatgaaaa atttttagcc taacaagtcc ttcgcctcgc      2820
     gaagttcgga aaaaattctg gcgttttgtt tgatcatccg cctaatccgt gagaagtaag      2880
     aagaaaaatc ggagataaaa aaaaacgcca caacattttc actcctaaag acaggacttg      2940
     tcctcagtgg attaatcaag ccaaattata tcgccatgat cccttcagta tccattcgaa      3000
     aggaacgtga ataaaagtac agaggaggcc ccgtaataaa aaatttaaaa ataaaaaatg      3060
     attacaaatg tttaaaaaca aatttaatat tataaataca aaaaaacaat attttaaaat      3120
     gaaaaatgca taacataaca ctttaagtaa caaatatccg aattctgaga aactgaaagt      3180
     aaaagtttag ctcaacttac cctgctcata tatcccaaga tttagcggac atacttgcga      3240
     atcttgccac acctttatca attagtaacg cacaaacaac cgcgcgaatt atgaaaaaaa      3300
     tattaaattt gtcgtaaggc aaatttaagt agtctggtaa aggaaattct taatctcaat      3360
     aaagattttt caaaatatac acggcaaact ataaaaagag aatcctagcg attcagataa      3420
     ataaacaaat atcgtgcgga cccttagaga tttttcggga aacaaaagcg aatatcttca      3480
     tggaagaaag gtgttgaaaa tttatgaact caaaatcggc tccccaaaat attacggaat      3540
     tcttttagca atctgaacca aaattaccgg ataagcggac gccgtactag aattatataa      3600
     ttcccctttc caaagttgaa cgaactcaat gatagtaaag aatagttagc cgaaacagct      3660
     gcagaatcag agacggtgca ctatggtcca aaaccccaaa tttttgacat aaatgatatt      3720
     ttttttgtga aataatttat ttttgtttca ttttttggtt tctataatac tgaaatgatg      3780
     tataaaaatt ttggaaagat tttttcggaa tgccccttat cttctacgcg cttttaaagt      3840
     cagctgttca gtgtcgttat gttttggcta aaaaacgcgg gaaaattttc ataacttgca      3900
     gctagtgatt caattaaagc gaacattcaa agctaaaagt gtcttnatgg aaaataaagg      3960
     tcaaggtatg taaatttata atttctaaac tttttactat atttatacat gtttgtgttg      4020
     ttttgtccaa tgtgttgcaa gtgtgttgtt ctaggttatt ctaacaaaag tacacgtgtt      4080
     ctgttaaagt tttcttttaa gtgcctccaa gtgccttgaa ggtaatatat taatgttttt      4140
     aacaaantac tataaaatca attttaagta atggtttttg cccgtttttg ccccttttcg      4200
     aaaaaacaat acatgttgca ggtgtttatg agttttctca tgcagcgctc ctcgaagttt      4260
     gggaggagag caaccggaaa gacgacgctg ttagaggttt tgttataaaa cgaataacag      4320
     aaagcgacag gattgacctt tctgaagagc atatggggga aatactaaat aaagttaagt      4380
     atttcattaa ctatgttaag agaaacttac cgaaatgcaa tcgtatgtta gggcgtttta      4440
     aatcagttca ctcacgatgg cttggttcaa aaatggttat acgcattgac aagcaaccag      4500
     tcactttgaa aactgggaga aaaaagtcga attatgaaga tgcaggacct cgccttaaaa      4560
     gaaaattagc atctgagctg gcttcagaag aagctcattc aacttctctc cttttacacg      4620
     ctgcctcagt ttcagcaaaa agtctaagga accagaaatc gcctttttat taaagaaagc      4680
     taaaagcagt gaagacataa atgatttaaa aaaaaactta atatgaatga gccgattcca      4740
     ataagtcctg atagtgcact ggcatttttt attgaaaatg gatttacaaa gcagcaatat      4800
     ttgaatataa gagcactaaa taagcaacaa ggatgtgata ttttcccttc atataatcaa      4860
     atcgccgaat ccaaattgaa atgcagacca ctggaaatta aaatctgtga aacgaaagcg      4920
     gaagtctcat tccaaaattt gctagatcat acagctcacc gcatacttga aatgcaacag      4980
     gaagtttttg atatttggcc agatgcaaca gaatgcactt taattgtgag ctatgggttc      5040
     gatgggtcta ctggacacag cacatataag caaagatttc aattgaatga atctgttggc      5100
     ttagatcatt cgctttttgt caccactgtt ataccgttaa agctaataga tcagcatcat      5160
     cgggttattt ggattaatag gactccacag tcagtgagat tttgtcgacc tttgaaaatt      5220
     gagttcgtga aggaaagtac tgcactgatt ttaaaagaga aaaaaaatct ggacgtggaa      5280
     atagaaaacc taaacgtatt atcttatagc tacaaaagca atataataac tgtaaaatac      5340
     caaactcata tgactttaat cgatggtaag gtcttaaaca ttgtaaccgg aaccaattcg      5400
     tgccaatcac gtccgttatg tggagcaaag cctactcaat tgcttaaaac aactgatttt      5460
     aactcgccga tttttaatgt gaaatcagaa aatttaaaat atggagtgag tccgctacat      5520
     gcatggatac ggtttatgga gtttgctctg cgaatttcct atagaattga agtaaagaaa      5580
     tggcacgtca aaggagatga aaagcttaaa gtatccttgc gtaaaaaaag tattcaagag      5640
     aagttgtgga ttgagcttgg ccttaatgta gatacaccaa aacaaaatgg aagcggtaat      5700
     agcaatgacg gaaataccgc aagacgggca ttctcaaata gtctaaaatt ttcggctatc      5760
     ttggatttgg attataaact catctataat ttttatatta ttttaatagc tatttcttct      5820
     gagcatatta ttgactccga aaaatttaaa tatttgtgta acaatacttt taatttatat      5880
     atgaaactgt attcttggta tccaatgtcc ccaaccgtac ataaaatatt ggtacatgga      5940
     caccaaatta taacccattt tattgttcca gttggtgtgc ttggagaaaa tgcatctgaa      6000
     gcgcgaaaca aattatacaa gagcgatcga aagtctcatg ccagaaaatg cagccgatta      6060
     gcaaatattg aagacgtctt tcatcgagca ctggactctt ccgacccatt tctctctaca      6120
     atttgtttga aagaaaggga aaaaaaaatc caaaaaggtc cttcccaaag aagtcattga      6180
     tctactcgat gttcctgatc cggagctata tatgaccgga aagtcggatg gagaaacaga      6240
     cgaagaagat tttttttgtt tagataatat tattttggat tcagaaattg aaaatgaaaa      6300
     ttagtttaat aatataatga taaaaatata ttttataaat gtattagcgt tttcatttgt      6360
     gttgattttg gggttgtata taagacgact ttactattta taccaataaa tacgacatat      6420
     gtgtaatttt gtttatatcg gttgtatggg ggcgggggga aggcgtggtc agaataacac      6480
     aaaatttttt tcgaaattct attttatcct ccctgatatt cgtgcaaatt ttcagaatct      6540
     tacgatcatt tttagagttt atgccaaaaa tttggccctt tggaccatag tgc             6593
//
ID   Transib-2_DBp repbase;    DNA;    INV; 1029 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1029
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 601-601 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1029 BP; 354 A; 158 C; 183 G; 334 T; 0 other;
     atcaagccaa cactgacaag ctcatatacc atactccatg aatttcatct gacgatggtg        60
     gatggtaaaa catttggtgt tctggcagaa gcatccacac agacatgtgg aatttgtaga       120
     gcagtaccaa aagacatgaa caatttggat ctggtgaagc gttacccgat tgactcagat       180
     ctattaaaat atggcttatc tagtcttcat gcgtggatta gattctttga atgtgtttta       240
     catttatcat acagactttc cattaaaaaa tggcaagttc gcggcacaga taagccagag       300
     gtggtgttat tctacgtgca ttaacttgtg gcaacgaaat caatattgat gcatttagtt       360
     catatgccat gaaatcagct gaaatgtatg tcgaattgta tccatggttt tatatgccat       420
     catctgtcca taagatttta attcatggtg cagacatcat aaagcatgtg ggtcttccta       480
     ttggcatgat gtctgaagaa gccctggaag ccaggaataa ggatttccgg aatatacggg       540
     agaatcattc tcgaaagaat aatagatcta atacaatgga agatgttatg cacgcattac       600
     tcgtgtcttc tgatccacta ataacatcat tgtctaaact gtcagcaaat tcggttaaat       660
     cttttaaatt tgataaagtt gttgctggtc ttctattaaa tttcccacat ttaaataatg       720
     attctgaatc ttcagattcc gaataatagt agcgaataat gtatagaaaa gaaacttatt       780
     agttaaaatg taaattttaa ataaaacaca taaaaattta aaaaaaaatg tgaacattta       840
     tattgttgaa tatggttttt tttacatttg tatgggagct atgataaata cctaacgtag       900
     gacattgaaa tttggagaat atacgtaaaa taaattaaaa actgttagta caaagtttca       960
     ttaaaatatc tattaattta ctaaagttct taatttaatt ctgctagcag agctattgga      1020
     cccacagtg                                                              1029
//
ID   Transib-2_DEl repbase;    DNA;    INV; 2686 BP.
XX
AC   .
XX
DT   19-OCT-2011 (Rel. 17.04, Created)
DT   09-APR-2012 (Rel. 17.04, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2686
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 12(4), 425-425 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. It is similar to Transib1.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 2686 BP; 937 A; 459 C; 481 G; 807 T; 2 other;
     cactatggtt tttttcgcgt tttttttttg gcataaagtc aatttttttt tgtattttaa        60
     atttttttat ttttaatttt taaacaccct agacagataa aaaatatcta actttaacat       120
     atggagcaac actgttctgc tggcgagctg ttaaagtcag ctgattatgt accatctgtt       180
     ttgtatgaaa ttggcgcgaa aaattgtgcg actttgatcg tttgttgtgg caaaagttta       240
     cgaaaaagtt agatgaataa atatggaaaa cgattgtcca tgtatgtaaa actaaagttt       300
     accaatgttt gtgtcgtttg ttatgtgttt ttgtccaatt gtaccgtgtt ttgtttatgt       360
     gtatttttag aacgagctta acaagtgtag ttgtgtttcg tggatcagta cttttgcatg       420
     gcaaagtgtt gcaaaaagtt ataaacgaga aactattaac caaagtgtgc agattaatga       480
     gaaactaacc gtttttgtcc gaatccacac gttttcgaaa aaatcaaaat tttctagtac       540
     aatatgtgtt cagtcgtgct gaactggttg acatttggag caacaaaaat cgctcaggag       600
     acgccgtaca acagcacata ttgagagtga tcgcacaaaa acatttagat aacgaaacca       660
     taaagtcgat taaggaaaaa gtgaaaggct ttgtcagtta tttaaataaa cactcgccta       720
     aatgtaattc aactctagaa agatttaagg gaaagcacgc aaaatggctt gggaaaagct       780
     tgttcataga aatcactggt cattatgcat tggcaaataa agtgggtcgc ccaaaatgtg       840
     attacgaaag cgctggtcct cgtctgaaaa gaaaattggc cgcggaactt tcagaggaga       900
     ataacaactt atctccctta ctcatatatg catgctgcca cagtttcagc aaaaaagttt       960
     cagacaaaga tggctgttgt tgamaatcgg ctgctagttc taggatcgac aactgaaaca      1020
     aaaaagaagc tttttgcgga tgagcccaaa caaatgcagc tgacagtgcc cttgcatttt      1080
     taatggaaaa tggawttaca aaacgtcagt atataaatat acgaccgaaa tggaaaaatg      1140
     cacggatgtg atatataccc ggcatatccg gccgtacttg acactaaata gatcataagg      1200
     aatagaatat tttgaaaata aggcacttgt atcatttgca aaatcttttg gatcatacat      1260
     catcccgcat tcttgaattg caacacgagg tctttaagaa acacttccca acgtggtaca      1320
     ttttgcaagt tatcgtcttc ggctggatta aggttcgtac ggacggagtc tacgaacagg      1380
     gtcgtccaga tcagcgatag tcctaacaaa agactcaatc tttgacagtt cactgtttgt      1440
     tactacaatt gtcccattga aattgacaaa tgaaacgcaa caaattattt ggctcaataa      1500
     gactccgcaa tctgttagat tttgccgccc attgaagatt gaattcatta aggaaactac      1560
     ctctcttata ttaaaagaaa atgaaaattt ggatgcccag attcgcaaca tgcaaatata      1620
     tttgtataaa tttaaagaaa aaatatatat gtcgagtata ttggtcacat gacactaata      1680
     gatggtaaag tcttaaacat attaacaggc accaactctt gtcagtcttg cccaatctgt      1740
     ggagcaaagc caaaacaatt gctcaacatt aaagacataa actcgaaggc ttttatggct      1800
     aaggcacacg ctcttcaata tggaatcagt cctttacatg cttggatccg ctttttcgag      1860
     tttgttttaa aaatctcata tagaattgat cttaagaagt ggcatgtcaa ggacagcgat      1920
     aagcctaaac taaaagaacg aaaaagactt ttacaataaa aatgattaaa gaaatgggcc      1980
     taaatgtgga caagcctctt tcaaatggca gtggaaactc caatgacggc aacactgcaa      2040
     gaagagcatt ttccaatgca gctttacttt catcaattct tggttttgat tacgatattt      2100
     tacaaagttt tcatacaatt ctaataacaa taacaattaa ctgcgagtac gaaataaact      2160
     cggaaaagtt caaagacttc tgtgctaaag tttttgtggc atatcacaaa aaatatcctt      2220
     ggtatccgat gtcgcccact gttcacaaag tcttagtgca tggctaccaa ataatagaca      2280
     cttgttcagt tcctgtagga tgccttggtg aacatgcatc agagtcccga aataaattat      2340
     ataagagcga tagaagaggc cacgctagaa aatgtagtcg attagacaat attacagacg      2400
     ttttcaatag atccatggat agttctgatc cattgctgtc cagtacatat ttaaaagatc      2460
     gactaaatac aattaaaaag caaaccatac cagaagcagt tatatctcta ctacaagcac      2520
     cacaattgga aattcaatat gaaaatgatg atccagattt ttaacataac catacttatt      2580
     taaaattttg tgaaatgtat cttaactttc ggaatgaagt aatttaaata ttttaaatat      2640
     ttaaccatta ctatttgtca aagaactaaa aaaaaaattt aaaaca                     2686
//
ID   Transib-2_DF repbase;    DNA;    INV; 642 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-642
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 800-800 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Both ends are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 642 BP; 228 A; 105 C; 110 G; 198 T; 1 other;
     tacattaaca gatatccttg gtatcctatg tcaccgacgg tccataaaat acttgttcat        60
     ggctggcaaa taatgaactc ctccttagtt tcggtgggat gtttaggaga aaatgcttca       120
     gaagcaagaa ataagtttta taaaagcgac cggaaatctc atgctcgaaa gaatagccga       180
     ttaaacaaca tggcagatgt tttttataga gctatggatt cttctgaccc attaatatcc       240
     agcatatgtt taagcgaaag gcaaaagaaa ttaaaaaaaa ttttccgcca gaagtaataa       300
     atcttctaca acctccttct gtcccgaact gcaaaataat ttcacaactg gaaaatgtgg       360
     attcggactc tggcgacgat tctgatgaaa atttatatat aatactagat gatgaagaaa       420
     aagagacata tgtatcttaa aataaaattt cacaacataa cctaaaaatc tttggttttt       480
     ttattgkttg tgggagaagg ttgaaggcgt ggcttaattt aaaaagaaaa aaatacgaaa       540
     ttctacatta acattttaca ttcttatgcc aaatttgaag catctagctt taaaattaga       600
     ctttatgcgt aaatttctga ctttttgccc atagtgcgct gt                          642
//
ID   Transib-2_DK repbase;    DNA;    INV; 1874 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   08-JUL-2021 (Rel. 26.07, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DK.
XX
NM   Transib-2_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1874
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1218-1218 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. ~50-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1874 BP; 681 A; 310 C; 303 G; 580 T; 0 other;
     cacagtagcg cctctcgaac aattagcgtt gcaaaaatca aaaaagtcat gttcgcaaaa        60
     acgattttaa ccatacttat tcgacaggaa atttaacaag gattcagaat ctgcaataaa       120
     atcaatttta agattttttt tgtagaagtt atgagcattt aaagttgaac tttgtttcgt       180
     tttttgcatc atacaaaaaa aatgtgtaaa ttggtcgact ttcaggtaat attacaaaaa       240
     aaccataaaa ccaatggtca tggtttttac tttaaatgat agatacattc ataaactatt       300
     aaagaaccta aaaaaacgac actttggttt gggcttctac aggtaaatcg ctacctgcca       360
     ggtgtccatt tttttcacct ttttctgcct aaagtagtct atatcttttg acgccaatgc       420
     cggccactga ctacactatg actacaagtt ccgtggatct ttcctggatc agaattaact       480
     ttcatcggct gcgtcgagct gcgtctgcgg aaatgcaacg caaaaaacca aaacaactca       540
     gggtaaaata taccaaaata ccataaccgc cacttacacg gtatatacta tataccaaat       600
     ttagcgcgca actgttttgc atcccaaata ctttcaatct gtttatgttt tctgtattga       660
     aggacaaaac gtacctttta aaatgggttt ggaggtttca tatttatacc tgattatact       720
     tccaaagggg caaaaagagt acttttaaaa agaggtagac cattttgttg tttacaaaat       780
     agttttgggc tgtactaggt ttcatattta tacctgatta tacttccaaa ggggcaaaaa       840
     gagtactttt aaaaaacagg tagaccattt tgttgtttac aaaatagttt tgggttgtac       900
     taggtaaaaa atgtcttacc taaaaattgc ataacatgaa tttgggacat atttacaaag       960
     atgcacaggt ataacacgtg catgatgtaa ccctttaaaa gacccaaaac cgggatatgg      1020
     aaacccaaac gatggaaata cttctcggag attttttgaa aattgccatg ttgcggcaga      1080
     aatcactgga gttgacgagg aaatcattca aagattgggt acgatcttga atgtactcaa      1140
     ttgcaaggag aaaattgatt ccgtaaaata tggggaatat gcttccatca cagcttcact      1200
     tttggctcag aagtatccac ataaaagatt gaccccgaca gtccacaaaa ttttggaaca      1260
     tggtaaagat ataattgaat atcaatcttt gcctattgga gaactttcgg aagaagctca      1320
     ggagtcgctg aataaattct ataagaaata caagtcatca agactgatgc aaaatgagga      1380
     cctgttcaac atgttggctg catcatctga cccatttatt gcatctctac ggcatgtaaa      1440
     atcacgaaaa gagatagaat caagtgatta tagtccagaa atgcttagtc tattagaaat      1500
     tcctcaaata taagcatata tttagtaata agtagtcaaa attaaccaaa aattaaaaaa      1560
     tactaaaaaa aaaattagta aaaaaaaaaa aaaattttca gtgttcaaaa tatttttatt      1620
     ttataaatta aataaaaata aagcaaaaaa attaacaaac ttttgttttt aaaaattcgt      1680
     tttcatagaa aaaaaattat tttttctctt tgatacccta taaaataccc tatttgtggg      1740
     cgtggcacat tatgcagtac atatataaat tttacaacaa ttacctgtcc aatgccgttt      1800
     aaattattta gttatctcat ttggttcaaa agttatgatt tttgcaacgc taaatgagaa      1860
     aaggcgctac tgtg                                                        1874
//
ID   Transib-2_DMo repbase;    DNA;    INV; 2816 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-2816
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2816 BP; 943 A; 468 C; 517 G; 888 T; 0 other;
     ctgcacagtg gttgcgccca taggtcaaaa ataaaaaaaa aaaagttgaa agattaacat        60
     aataagttat caaggcaaca cagaaatgtc taaacttttc aagtgcatct cgcttttgcc       120
     gaaaatctaa cggtaagttc taaaaatagc tctgcaacac agcacacgtg ttcacatttg       180
     acaagctgaa cgaaagcaga caaaacagaa gcgcacgcaa caaaaattca tatttttgtt       240
     tcttaaccaa ttgtttgtaa gaataatgga atttaaagct aatggtatgt attttttgtt       300
     aaaattaagg tttatgtcat tttacacatt gtgattgtga attgtgtgtt ttagtaacat       360
     tgattattga atgttttttg tgctctgttt ttcatgttta cctaaggttt tagttgtgtt       420
     ccccccacac gtctccaatg tggtatatgt cattgtattc gtcaattatt tgtgatttta       480
     aagacgcatc catagtttgc aaatatttgc agaccattaa gtggtaagaa aaaaaaggta       540
     gcagtctgtg ccattaaggt tatgtttcta caacgtctct gacgctcagc tgttctttgt       600
     gtttgtttta tttcgtgttc gccttttttg gttgtgtttt atttttttat ttgtaatttg       660
     gctttctttt gtcaggttct tcttatcaat gcgaatattc gcgaatgttt atttttgata       720
     tttggtgcgc tcaaaaggga actggtgccg gcaaaactaa aattgtgctt gatgcagtgc       780
     aaaaacacat tgagaacaaa ggcttcacaa ccaatttatg tgatctaaaa aatgttgtaa       840
     cgtatgattg taagaaaatc gctgcgtatt ggctaaaata caagcgtaac aaaaggcaat       900
     tattaaagtg ccaaagcaca tggttggaag ggaaaaaaac gattccgttg agtaaggtca       960
     atcaattggc aacaaactca aatcgtggac gtcccagaaa aatgtttttt gagagttcaa      1020
     ataggacaaa acgacgaagg attgcggaaa tttctaaatc taatgaaatt gtagcttccg      1080
     ctttacgatc ggccacagta ctacctgaag cgagctcgaa agtaaatatc atggaagttg      1140
     tatcgcttat cattgaaacc aatttgtcaa aacaccaata tctgactatt aggaatttcg      1200
     taaattctaa atctctctgt gatattttcc caagctatga aaaagtctta aaagccaaag      1260
     cgtttagtta ccctgaaaaa atcactgtaa gtgagtctgg agcagaagtg gatcttcaaa      1320
     gcttactgga tcatactgca tcgcaaattt tgaagctgca atgcgaggtc attaacaaca      1380
     ttgacaacga ttcagtaaaa aatttaattt taataggaaa gtggggattt gatggcagta      1440
     cgggacattc ggaatataag caaaaagttt caaataataa cttcaatgat tcaagtctgt      1500
     ttgttacgtc gtatgtaccg ttgcagctag taacacaatc ggatgatccc aaaatcattt      1560
     ggaaaaatcc ccggccgtct tccacacgct actgcagacc tttaagactg caatttgaaa      1620
     aagaaaccac acagttagct ttaaatgaag aaaagtattt caaagaacaa attaatcgat      1680
     tggagtgcac tgaatgttta gtgtctgaga gaaatgttca agttgagcat agattgcaat      1740
     tgactatggt tgacggaaaa atatgtaatg ctcttagtgg aacatcttcg gccaaatgtt      1800
     acatatgtga tgcaaaacct agtcaaatga atgacttgga aaattgcttg aagagaagtg      1860
     caaattccaa attttttgag tttggattat cacctttaca ctcatacatt cgattttttg      1920
     aatactttct tcatttgtcg tacaggctag accaaaagct ttggagaatc agcaccgcag      1980
     aagggaaaaa aatggtttcc gaaagaaaaa gtatgataca agctaaattt cgtgatatgc      2040
     tcggacttat agtggacaaa ccaagaactg gaggaagcgg gacttcaaat gatggcaata      2100
     ctgccagaac attttttaat aacccggaag tatctgcaca aattactgga ttagatacaa      2160
     accttatagt cagatgtggt acattgcttc aagtgatatc atcgggatat aaaattaacg      2220
     ttgataattt tcaaaagtat gccctggaaa ctgccaaaga actattacaa aaatatcctt      2280
     ggtattatct tccacctagc gtgcacaaaa ttttgattca ttcagctgat ataattaatt      2340
     attgcctcct ttctattggg gaattatctg aagaagccgc agaatcccga aataaggata      2400
     taaaaatgtt tagaagccag cacacccgaa aaacatcacg cattgctaca aacacggatt      2460
     tgataaacag attgctcttg agctctgatc catttattac agagcagaga gatttgccgt      2520
     gcaaagcaaa gtcaaaacta atgaattctt caattcaatt attagaagat tagtttaata      2580
     aagaaataga ccaatatttt tcttattttt gtctttaatt ttgttggttt ttggtttttt      2640
     attatattgt gatttgataa aatttttttt gtaaggcgta taatgaacgg accacgcccc      2700
     ttttgtttta aattcacttc ctaaggtctt attataaaat aaaaaaaaat tcagctcgat      2760
     atctcaactg gaactatttt tgaccgctct ctccatacaa gcccaaccac tgtgca          2816
//
ID   Transib-2_DRh repbase;    DNA;    INV; 1596 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1596
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1419-1419 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 14-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1596 BP; 523 A; 261 C; 287 G; 524 T; 1 other;
     cactgtggtt ccgccagagg ccaaaaatca aaaaaatgat aacaacgaat tgaaaaaaat        60
     tgaaagcaaa ttttctctaa aatgttcaaa cttcttgatg gcaaaccggt tttgtctgga       120
     aatctaacgg gactttataa aaatagaatg taaagcgtga tcatgtgtac attcttgcag       180
     cgcatctgta cttatcaaga attttaacaa aacaaaattg cgcttcaaag tggtcaaacg       240
     tttgatagag tgatccgatt ttcatcattc aaaatgcatt ttgaagttga aggtatttac       300
     tttaaatgta tatattaaga attaaataaa tccaacaaat tttttagtga aactaacaaa       360
     atcgatttaa tattttttgt gtattttgtg aacgtctttt ttatgtttac ctaaagtttt       420
     agttgtgttc ccccccgatt cccccataga tattatattc attgtattaa tcagagtttt       480
     tacttaataa aagtgtttaa gtcagctgca gaaacttgca gatgtgtgtg aaacaatcaa       540
     taatctaacg catattttta tttcttcaag gtcaaacttg tccagcagag cccctgtgtt       600
     tgttttgtgt gtttgtcgtc gtctttactt gtggtttaca ttgtgtataa aaacttcgta       660
     atatttaaaa atttttgttt ttaactttta atttcatagg caacataagt cagtgtgtgt       720
     tggcacgcct acatattttt aataaaaatg tggcaggcca gagggcccca acaaaaacaa       780
     aaagttttag aaagaaagag agaagttaac gggattttcg agataaaatg ggcttaatag       840
     tggaccagcc tagagatggt ggcaaaggaa catccaacga tggcaatgta gcgagaaaca       900
     tttttttcga atcctcggtt gtctgcagaa attacaggcc ttaatgaaaa tttgattcat       960
     cgttgttcca ccttactgca agctttggca tcgggacaca aaatcaacgt acacaaattt      1020
     aatgaatatg ccctcgatac tgccaaaggg ttaatcaagg agtatccctg gtactatttg      1080
     cctgcgacgg ttcacaaggt gcttattcac ggatctgcta ttatagagca cgcaattgtt      1140
     tcaattggag agctctcgga ggaagctgca gaggcgaaca acaaagaaat aaagaaatgc      1200
     agactgaatc atacccgcaa aatgtcacga atacwtacaa atacagacat attgaattat      1260
     ttgcttttac ggtccgaccc atatattact gggcagagaa atattgaaaa aaaggacaat      1320
     ttaaaattat ttccctcagt taatagcttg cttgatgaga catcctaaaa tttttgtata      1380
     attttgaagt tacagccatt gtaaattttt ttagttttta aatggctcat aaattgttat      1440
     tgtttaatta tttgttaaat tttattattt ggggttcatt ggttggcgga ttttttcaac      1500
     tacaaacact atttacgaag cttggtaaaa ctttcagcac tcttatgcca ttaaaagcat      1560
     ttttggccgc gcttccatac aagcggaacc acagtg                                1596
//
ID   Transib-2_DSer repbase;    DNA;    INV; 3091 BP.
XX
AC   .
XX
DT   10-OCT-2019 (Rel. 24.10, Created)
DT   10-OCT-2019 (Rel. 24.10, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila serrata genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DSer.
XX
OS   Drosophila serrata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-3091
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila serrata genome.";
RL   Repbase Reports 19(10), 1848-1848 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs. 31-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           701..2209
FT                 /product="Transib-2_DSer_1p"
FT                 /translation="MFCTNLFVMWQKCKANIKYFSTRNSKWLQDNLSISLN
FT                 KEDGNRKLNRPGRPKISFNFKGKRAQRKQAADLSKAYKHNARLLVQAASIA
FT                 ARKRGLLDIAAVLKLLALNPAKAKSIRKLLKTPITKPLRSSPEEALALILD
FT                 QGLTKNQYCALREDAKCRRADIYPRYKEVAEKKKDCRPPNIEVSDTVAKTS
FT                 LQDLLNHTAIRIVALQEASIAMAMKNQQTDFLSAELILSYGFDGSTGQANY
FT                 NQAYTDNHSHDTDSSLFATTVMPLRLIDSSANILWNNRTPQSIRFCRPLKL
FT                 EFLKETKEVIIRESMNIRKEIDNLMSCKVLLNERQCIYVKFSLYLTVIDGK
FT                 VLNALTGAKSFQACPICSATPKDFLGNKNFKCLKFLPILDNLKHGVSPLHC
FT                 WIRFFEFLLHAGYKTGIQKWRISNPVEKSLVSERKKSIQRMFWEKLSLKVD
FT                 QPKKSGFGNTNVGNTARRAFNSYKIFSEIIGIDEELIFNMRTILICLSCQL
FT                 PINLEKY"
XX
SQ   Sequence 3091 BP; 1094 A; 528 C; 555 G; 914 T; 0 other;
     cactatgggg catttgactc gtttcgttgg ctttaattga ttttttacaa gtattaaaaa        60
     taacgatatt ttaatgcaaa cacattttaa atacatcaaa atgttatgtt acataccaga       120
     aatgttaact caaaatggca ctgttaaagt agcagctgtt aaagtcagct gttgtaaaca       180
     agaaccacgc ggcttgttta agcttaattt tgaagtgcat tttcgaattg ttataaaacg       240
     agaaaaaaaa agaaaataac taaaatttga aatgaataat ataaatacag gtttgtttta       300
     tgtgttttta ctaattcgtt gttttatttg tgcgtgtctt tctaacaatt tgtatattta       360
     acatgtagtg tcaacagctg acttttggaa aaaaagttca actttgataa gatttttaat       420
     caactgttga agtttgttga gtaagtgtct atatccatgt cgtagattta tcatttccta       480
     attcagagca tccaatctta atttccactt ttctctaccc tttacgtaat ttcattttta       540
     aggaagcaac ctcttattta aaaatgttga cttgttcgaa gtgtggcgaa aggaaaggtg       600
     ccgccgtgac aaaaatgatg ccgtttttaa ttttatatgt cgccatgttg tttcgagtac       660
     tctggcttta aataaaagct attttaaaga aaaatcaaga atgttttgca caaacttgtt       720
     tgtcatgtgg caaaaatgta aggcaaacat taaatatttt tcaactcgaa attcaaaatg       780
     gcttcaagac aatttaagca tctctttaaa taaagaagat ggtaacagaa aactaaatag       840
     acccggacgt ccaaaaatat catttaactt taaagggaaa agagcgcaga gaaagcaagc       900
     agctgatctt tccaaggcgt ataaacacaa tgcacgtttg ctagttcaag ctgccagtat       960
     agctgcccgt aagcgcgggc tcctcgatat tgctgccgtt ctaaagttgc tagcgctcaa      1020
     ccctgctaaa gccaagagca tcaggaagct attgaagaca ccgattacga aacctttgcg      1080
     ttcttcccca gaagaagccc tggctttgat tttggaccaa ggcttaacta aaaatcagta      1140
     ttgcgcattg cgagaggacg ctaagtgcag aagggcggat atctatccaa gatataaaga      1200
     agtggcggag aaaaaaaagg attgccggcc accaaatatt gaagttagtg acacagtagc      1260
     taaaacttca cttcaggacc tattaaatca cacagctatt cggattgtgg ccttacagga      1320
     agcaagcatt gcaatggcaa tgaaaaatca acaaactgac ttcttatcag ccgaattaat      1380
     attaagttat ggctttgacg gaagtacggg acaggccaat tataaccagg catacactga      1440
     taatcactca catgatacag attcaagtct atttgctaca acagttatgc ctttacgcct      1500
     tattgatagc tcggcaaaca ttttatggaa caatcgcact cctcagagta tacgattctg      1560
     tcgtccatta aaactggaat tccttaagga aacaaaggaa gttattataa gagaaagcat      1620
     gaatataaga aaagaaattg acaacttgat gtcttgcaaa gtactactca acgagaggca      1680
     atgcatatat gttaaattta gtctttactt aaccgttatc gatggcaaag tgcttaatgc      1740
     tttaacagga gcaaaatcat ttcaagcttg tcctatttgc agtgcgacac ccaaagattt      1800
     tctgggtaac aagaacttta agtgcctcaa atttcttcct attttagata acttaaaaca      1860
     tggagtcagc ccactacatt gctggatcag attttttgaa tttttgctgc atgccggata      1920
     taaaacaggt atacaaaagt ggagaatttc aaacccggtc gaaaaaagtc ttgtctccga      1980
     gagaaaaaaa agtattcaac gtatgttttg ggaaaaactt tcattaaaag ttgaccagcc      2040
     aaaaaaatca ggatttggga acacaaacgt gggaaatacc gcccgacgag cattcaatag      2100
     ctataaaata ttttctgaaa taattggcat tgatgaagag ctcatattta acatgaggac      2160
     aatattaata tgcctgtcat gtcaactgcc cataaacctg gaaaaatatt aaaaattgtg      2220
     tcaaaagacg ggagaattaa ttatagacaa atatccttgg cttgcaatga cagcgacagt      2280
     tcataaaatt ttggtgcact caacagaaat actgcaaaat acagtacttc cagtcggtta      2340
     ttttggtgaa gaggcggctg aatcgcgaaa taaaatttat aaatcagaca gactacacca      2400
     tgcaaggaag aatagccggt tatgcaactt cactgacgtg ttccatagag cattggatac      2460
     gtcagacccc ataatttcgt cagtaaactt aaagaggcgc atacgaaaac ataggcgcat      2520
     ttctcttcca actgaagtca tagaactgct atcctgcgaa tttgacgaat tggatgaatc      2580
     tttggatgat tgcattgatg aattagatga aactttgatt gattgttatg tagacgaaga      2640
     aatcaatgat tttttgttca atatagaact tgataatgag gaaaatattg agtaatatat      2700
     acatatatat acatatttat acgttattat taaaatataa aaaatatcta tatttggtat      2760
     aaaaaattgt actttatgct caaaaaaaaa aaatggtggc ggggggtagt gacacgccca      2820
     cttttcaaaa tatttctaag agtgttttta atactagaaa aaaaacccca gcaaaatatg      2880
     ttttcatttt aaggagttat taattaaagc caacaaaacg atagcataca aatttggtac      2940
     accctaaaag gggcggtgcc acgcctccat ttttttacag ttaaatctta tcaataacac      3000
     gaactaaata ccgaaaacca aatcaaaaaa tctcttttcg ttctcaagtt attaattaat      3060
     gccaacgaaa cgagtcaaat gccccatagt g                                     3091
//
ID   Transib-2_DSuz repbase;    DNA;    INV; 1810 BP.
XX
AC   .
XX
DT   13-JUN-2021 (Rel. 27.01, Created)
DT   13-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1810
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 86-86 (2022).
XX
DR   [1] (Consensus)
XX
CC   96% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1810 BP; 584 A; 286 C; 316 G; 622 T; 2 other;
     cacagtggtc gctgccatag gccataaata aaaaaattga ttttgagcta ttccaacgaa        60
     acccactttt tctaacagcg tattgtccaa acttaacgac acaataccgt ttgtttggca       120
     attctaacgg gactctctaa aaatagaacg aaaagagcga gcacgtgttt acgtatttgc       180
     aacttgccag cagtcaagtg caacagccca aatttaaaaa aggcaaatta attataaaac       240
     actcgtaaaa tcaatagaac tcaaatgaat attgttcata gtggtatata ctttatttat       300
     acagataaat atataaatat tttgtgctgt gtcttgtcta tatctatttt taaagaagtg       360
     cgtctttttt agtttgtatt tgttgtccat tacaaagttt aggtaaagtt ttaagtgttt       420
     tccccacgtt gccccccaat aaagtacaca ttacattatt tattaatatt tttagattat       480
     aaaaatgttt acttcagctg cgacaacctg cgtctgcaca tttgccattg caaaattcaa       540
     cataacctct tttatttttc agcagctcta tctaggaggg acgcactttt ttgttctgtg       600
     tctgttatgt tgttgtttcc gttgtagttt gttgttgttt ttgcgttatt tgttatgtgt       660
     tttatgtttt tagattattt ttttgtttga ttatttaatt attttctcag gtacccaaat       720
     tcaaagcgag tatactcgaa attatgtttt taacatttgg attgaggaat ctggcacact       780
     tgcggaaaga tttaaaaatg tactggatgc cctaattaag gacataagaa ataagggata       840
     tgagccgaat ttggacgaat tccaaacaca aataagctat atttgtaaaa agctggcatc       900
     gttttggcag attgctaatc ggaataaaga gagatttctt aacaaaaatt ctgattggct       960
     ggagtgcaag gaaactataa ttataaaata ctccttgcca ccaaaagcaa ctaatattag      1020
     tcgtagacgg ccaaaaaagg attttgcaga catttcgaat aggacgaaac gccgacgcat      1080
     agcagaggtt gcgattagag atgagtctgc tgcatctctt ttacggatat ctgatttgca      1140
     agggaataaa tcaatttccg aaccaagaat tgaagaagtt ttagctcttt tcatggaatg      1200
     tcagttaacc aaacaccagt atttaatgat acggtcattt attaactcaa aattatcata      1260
     tgaagtgttg cccagctatg ataaaatcgt gtctgctaaa caaaaaatgt gtttaacaga      1320
     ttgcttttaa gctctgatcc atatataact ggacaaagaa aaattactta taaccaaaaa      1380
     tcaacgctac tagagtcaat tatttcatta cttaatgaaa caatttaaaa agaamatgat      1440
     tttgttttgt tgtttgtttt ccacattaaa aatatttgta tatatctttg gctttttgtc      1500
     tgttatctga gagggtgtgc gtgggggtgg aaataggtaa tcacacccat acatgtaggt      1560
     attatagatc ttggttgtta aataacttac agtaaaaata tcagtctgaa tttatgaatt      1620
     tactttctcc agtaagcgca attactgagg aaatcgttcc caaggaagct acaggatata      1680
     gttgtacgat ctggtcaatt tttwtactat atatttataa tatttttata gatttttggt      1740
     gaaagtttca tagcgatagc acatctagaa gtatttatgg ccgcggctcc atacaagccc      1800
     gaccactgtg                                                             1810
//
ID   Transib-2_DTa repbase;    DNA;    INV; 3090 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.09, Created)
DT   26-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3090
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4696-4696 (2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           618..2645
FT                 /product="Transib-2_DTa_1p"
FT                 /translation="MEFLLQAMNGIELSESQHTIVKKKMKQFFAFLSRNLP
FT                 KCHRIIDRFKEKHSLWLSSNMKISFLEKGTPSDKPGRKCLTYTEAGPRLKR
FT                 KLASQLAKEKENSMPLLLHAASILAKNNKEEDTQVLLRKALNSKNIADEKK
FT                 TIERNAILKISAEEALAFLIENRLTKQQYINIKAISKQHGCDIYPPYSELT
FT                 DMKLKCRPAEITYTETTAKVSMQNILNHTAERIFEMQKDVISHPLTSPCTL
FT                 IFSYGFDGSTGQSVYKQRFHTDRPVALDHSLFVTAIIPLKLIDHQNRIIWY
FT                 NRSPQSVRFCRPLKMEFVKETTDLILSEKENLEFQIQNLKEHTYCYGNKKI
FT                 AVNYNANLTLIDGKVLNILTGTNSCQSCPLCGAKPTQLLKTKEINSKNFQV
FT                 ISENLKYGISPLHAWIRFLEFVLKVSYRISLKKWRVTGSDKEVVSLRKQEI
FT                 QRRLWDEMGLNVDNPKQNGSGNSNDGNTARRAFADAEILSTILSFDLKILK
FT                 NFYTILIAISCEYKICPVKFKTFCTETFNSYVKKYNWYPMSPTVHKVLVHG
FT                 HEIIECSILPLGVMGENASEARNKLYKRDRLSHARKCSRLDTMTDVFNRAL
FT                 DSSDPLLSTINLQGRKSSTRKKSLPKEVIALLESPEVELSRIGTCEDNNNN
FT                 DVDEAGEDEIEILGLDTLVLEEEFWDE"
XX
SQ   Sequence 3090 BP; 1084 A; 512 C; 576 G; 918 T; 0 other;
     cactatgggc aaaaaattcg aaagtgaggc atttttacat tttttttatt cttcagtatt        60
     acataaatga ccttctgtgg ttatttacaa cacttaaaat aacctaaaat ccattttcaa       120
     agaatttatt ttggcgtttt tacctatttt ttcccttaag aaagtcgaaa gtttaaaata       180
     aggtcacacg ttttcaaaaa gggacgggaa actttgtagt ttttgcacct cgatttctct       240
     ggctattgta aagaaaccaa aaaagtttaa atatggatac aaagagtaaa ggtttgtgaa       300
     ataaattata agcactgaat gtttattata tgtgcttttt tgtccatttg ttcaatgtgt       360
     tgttgcttag tttttagatg acaaataaga aatttgtttt tgctttctgt ggtgtgtaac       420
     ttgtgagtat aggagagtat aggcaaggta aaaattggaa gttataaaca taacaattgt       480
     taatcaaacc ctatcaatac tttttgcacg tttttgcacg ttttacgtaa aacctccatg       540
     ttgtagttgc attcgagttc tgtcattaca cattgcttaa tgtttggatc gacaacaacc       600
     ggcaacaatc cgctgtgatg gaatttcttt tgcaagctat gaacggaatc gaattaagcg       660
     aaagtcagca cacaatagtc aaaaagaaaa tgaagcagtt ttttgccttt cttagtcgta       720
     atttgccaaa atgtcataga ataatagacc gattcaaaga aaaacattcc ctgtggcttt       780
     cgtcgaacat gaaaatttca tttttggaaa agggcacgcc aagtgacaaa cctggtcgca       840
     aatgcctaac ttatactgag gcaggaccac gattaaaacg gaagttggca tctcaattgg       900
     cgaaagaaaa agaaaattct atgccattgc ttttgcatgc tgcttctatt ctggcaaaga       960
     ataacaaaga agaagatacg caagttttgt tgcgaaaggc attaaatagc aaaaacatag      1020
     ctgacgaaaa aaaaaccatc gagcgaaacg ctattttgaa aattagtgca gaagaggctt      1080
     tagcattttt aattgagaat aggctaacaa aacagcagta tattaatata aaagccatta      1140
     gcaagcagca tggatgcgat atctatccgc cgtattcgga gcttactgat atgaaattga      1200
     aatgcaggcc agctgaaatt acttataccg aaacgacggc aaaagtatcg atgcaaaata      1260
     tattaaacca tacggctgaa cgtatatttg aaatgcaaaa agatgtaatt tctcatccac      1320
     taacatcgcc ttgtacacta attttcagtt atgggttcga tgggtcaaca ggtcaaagtg      1380
     tatataagca gcgatttcac acggatagac ctgttgcctt ggatcattca ctgtttgtga      1440
     cggcaataat tcctttgaaa ttaatagacc accaaaatcg aataatttgg tacaatcggt      1500
     ctccacaatc agttagattt tgccggcctc taaaaatgga attcgtcaaa gaaaccactg      1560
     atctcatatt aagtgaaaaa gaaaacttgg aatttcaaat tcaaaatctt aaagagcaca      1620
     cttattgtta cgggaataaa aagatagcag taaactataa cgcaaatctg actttaatcg      1680
     atggtaaggt tttgaatatt ttaactggta caaattcatg ccaatcgtgc ccattatgtg      1740
     gtgctaagcc aactcagctt ttgaaaacga aagagatcaa ctcgaaaaac ttccaagtta      1800
     tttctgaaaa tcttaaatat ggaataagcc ctcttcatgc ttggatacga tttctggaat      1860
     ttgttttaaa agtgtcgtac agaatttctt taaagaaatg gcgagtcaca ggatctgaca      1920
     aagaagtggt atcattacga aagcaggaaa ttcaacgcag actatgggat gagatgggtc      1980
     ttaacgtaga caatcccaaa caaaatggta gtggaaatag caacgacgga aatactgcaa      2040
     gaagagcatt tgcagatgct gaaattttat ccacaattct tagctttgac ttgaagattt      2100
     tgaaaaactt ttatacaata ttaatagcca tatcttgtga gtataagata tgcccggtaa      2160
     aattcaaaac cttttgtacc gagactttta attcatacgt gaaaaaatat aattggtatc      2220
     caatgtctcc aactgtgcac aaggtattgg tacacggtca cgaaattatt gaatgttcca      2280
     tacttcctct tggagttatg ggtgaaaacg cctcagaagc gcgaaacaaa ttgtacaaac      2340
     gcgatagact ttcacacgca aggaaatgca gccggttaga taccatgaca gacgtgttta      2400
     acagagcatt agattcttct gacccactgc tgtccacaat caatctccag ggaagaaaaa      2460
     gttcaacacg caaaaaaagt ctgccaaaag aagtcatagc tcttttggaa tctcctgagg      2520
     tcgaactctc aagaatagga acatgtgaag acaacaataa taatgatgtc gatgaagccg      2580
     gtgaagatga aatcgaaatt ctgggacttg atacccttgt tttggaagaa gaattttggg      2640
     acgagtaaat aaaagatttc acttacaggt atgtcgtctt taaaataaat attagggtgt      2700
     aactaacgtt ttaataaaaa gtttacaggg acacggatta ttcatttttg cgatcaaggg      2760
     tctagtaatt attcattaac aaataaattt ttttgaaatc gtttccttca aatgtattaa      2820
     tgcggcatgg gcggtggatg gagacatggt caaaatttaa caaaaaccga aattgtatta      2880
     cagtcttacc agcacaaaca acattttctt taaatccttg ccctcaaatt tatatatggg      2940
     gcgtgggcgg aggatgaagg tgtggtcaga ttcaaaaagc aacaaaaacc gaaattacat      3000
     cttagtctta aaagtacata aaaaaatttt taaatttcta tctttaaaac tagagtttat      3060
     gcctcaaaaa ctgatttttt gcccatagtg                                       3090
//
ID   Transib-2_DW repbase;    DNA;    INV; 2832 BP.
XX
AC   .
XX
DT   11-SEP-2011 (Rel. 17.09, Created)
DT   11-SEP-2011 (Rel. 17.09, Last updated, Version 2)
XX
DE   DNA transposon from Drosophila willistoni: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_DW.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2832
RA   Jurka J.;
RT   "DNA transposons from Drosophila willistoni.";
RL   Repbase Reports 12(9), 1741-1741 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..2635
FT                 /product="Transib-2_DW_1p"
FT                 /translation="MPKCQRKIEKFKEKHQQFLDSKMTIHIERAAVKECSV
FT                 GRPRLTYDEGSSRLKRKIASDIATSQGRNTAMLFHAATSAKKSKCNECTDC
FT                 IDCSLKENVINVKRKSDCNQKPVQMTADEALAFLLENSFSKKQYNAIRTIN
FT                 QKHGCDIFPCYDNVFKAKSECRPVGIQATETSAQVSLQNMLNHTAKRIIIF
FT                 QKEVFAQFESVTDVKLIVTYGFDGSTGHSLYKQQFEEKVQDTLDRSLFVTS
FT                 IIPIKLLDSLGRVLWMNSKTQSVRFCRPLKIEFIKESKEHILAENNRLKDE
FT                 IENLKPYLFNNWSGRTVSVSFDLNMTLIDGKVLNALTGTNSTQSCPICGAT
FT                 PKTILMTTDTNAEVFKPKPFALQYGVSPLHAWIRFLEFALHISYRIGINKW
FT                 QIRDPNDKAFMASRKKNIQEKLWKQMGLHVDRPKQNGSGNTNDGNTARRAF
FT                 SNVHLFSSILNFDEDILECFGTLLIAISCEYEICPQKFQNFCTKASDLYMA
FT                 KYPWYPMSPTVHKILVHGSQIIAASSVPVGCLGENASESRNRFYKRDRLSH
FT                 SRKNSRINNLVDVFHRAIDSSDPLLSSKYFLDKYNNHNYKKLPSKVLELLA
FT                 KPNVKTDDENLALVDIEYESDSDSDYKPLDAYSYELEAEEY"
XX
SQ   Sequence 2832 BP; 962 A; 484 C; 525 G; 859 T; 2 other;
     cagtggcaga tttgaagaaa atagcggcat aaactcnaaa aaaaaaattt tagcattgct        60
     attaaattaa tattattttc actaaataag tgttttatct atttgaaaat aaaaanattt       120
     taattattca tgcagccccg gccttctggc agccctgcaa aagcagctgt ttgtggcacg       180
     tggcttttgt gttgattttg ctcaaaagct tgtttaactt ttaatgctcc ataattcgct       240
     taataaaata gctagaggta ttgctaaata tggaaaacat agttcaaggt atgttgatca       300
     ttaggttaat gtcaaagagt ttgtacttgt gtgttttgtc tttcgtttcg tttgttattg       360
     ttggtatcgt ttgtagaaga aacctaacct caacgttctg tgatttgtgg actaaatgtt       420
     acctgcttct cgttgctact tgcaagtaag aatgcaatta ttttccgtta aatgttctta       480
     agatgacgcc aataattttg cttgcgcttt tttgcgcctt tttaaaatat ttgctgatat       540
     tgcagacaag gtagagttca gtcacaagga gttgcttcaa atttggattg ataatgggcg       600
     cacaagtaaa gcgctttctg agtgggtgtt tgaaaagatt aatgaaaatc ttaaggcagc       660
     taataaactt gaaataaaca aaaaaatttc gaactttgtc gcttatatat gcaagtacat       720
     gccaaaatgc caaagaaaaa tagaaaaatt caaagagaaa caccaacagt tccttgattc       780
     aaaaatgaca atacatattg aaagagctgc tgtgaaggag tgttccgttg gtcgtccacg       840
     gctgacttac gatgaaggca gcagtcgttt aaaacgaaag atagcttcag atatcgcgac       900
     tagtcaaggg cgcaatacag caatgctttt tcatgcagct accagcgcca aaaaatcaaa       960
     atgtaatgaa tgtactgact gtattgattg ttctttaaaa gaaaatgtta tcaatgtcaa      1020
     gaggaaaagc gattgcaatc aaaaaccagt tcagatgact gcagatgaag cattagcatt      1080
     tctacttgaa aattctttct ccaaaaagca gtataacgcc attcgaacca taaaccagaa      1140
     gcatggttgc gacatattcc catgctacga caacgttttt aaagctaaat ctgaatgtag      1200
     acccgtcgga atacaagcaa cagaaacttc agcacaagtt tcgttacaaa atatgctgaa      1260
     ccatactgca aaaagaataa ttatttttca aaaagaagtt ttcgctcaat ttgaaagcgt      1320
     aaccgatgtg aagttaatcg tcacctatgg ctttgatgga tcgactggac acagtttata      1380
     caagcaacaa tttgaagaaa aggtgcagga cacgcttgac cgatctctat ttgtcacatc      1440
     aataatccct ataaagttat tagattcttt ggggagagtt ctatggatga attctaaaac      1500
     tcaatcagtg cgattttgta gaccactgaa aatcgaattc attaaggaga gcaaagaaca      1560
     tattttagca gaaaacaata gattgaagga cgaaattgaa aacttgaaac cgtacttatt      1620
     caataattgg tctgggagaa ctgtctctgt ttcgtttgat ctaaatatga cacttatcga      1680
     tggaaaagtt ttaaatgctt taacaggaac gaactcgacc caatcatgtc caatatgtgg      1740
     tgctactcct aaaaccattt tgatgaccac ggatacaaat gctgaagtat ttaagccaaa      1800
     gccttttgct ctgcaatatg gtgtaagccc attacacgca tggataaggt ttcttgaatt      1860
     tgctctgcat atttcgtatc ggataggaat aaataagtgg caaatcagag atccaaatga      1920
     taaggctttt atggcatctc gaaaaaaaaa tattcaagaa aagctatgga aacaaatggg      1980
     actacacgta gatagaccaa aacaaaacgg aagcggcaat acaaatgatg ggaatactgc      2040
     tagaagggct ttttcaaatg ttcacttatt ctcatctatt ttgaactttg atgaggatat      2100
     tcttgaatgc tttgggacac ttttgattgc aatctcctgt gaatatgaaa tatgtccaca      2160
     aaagttccag aatttctgta cgaaagcttc agacttatac atggcaaaat atccttggta      2220
     tccaatgtcg ccgacggttc acaaaatatt ggttcatgga tcccaaatta ttgctgcttc      2280
     ttcagttcca gttggatgct taggagaaaa tgcttcggag agccgaaaca ggttttacaa      2340
     acgggataga ctgtcgcatt ctcgaaaaaa cagtcgcatt aataatttag tagatgtgtt      2400
     tcaccgagca attgattcat cagatcccct actttcaagt aaatattttt tggataaata      2460
     caacaaccac aattataaaa aattgccgtc aaaagtactc gaacttctcg ctaaacccaa      2520
     tgtgaaaacc gacgacgaaa atctcgcctt agtagatatc gaatatgaat cagattcaga      2580
     ttcggattat aaacccttag atgcatattc atatgagctc gaagcagaag aatattaaat      2640
     aaaagcgata ttttaagtaa aaaattaaat ttttttatat gagttatatg ggcggtatga      2700
     gtgggcgtgg cctgatacgt ttgaaacttt ttccaatttt tctatataca aatacaatca      2760
     cgtgtaccaa atttcaagtc cttacggaca gtattttaat ttatgccgct attttcttca      2820
     aatctgccac tg                                                          2832
//
ID   Transib-2_FoCa repbase;    DNA;    INV; 5300 BP.
XX
AC   .
XX
DT   04-NOV-2019 (Rel. 24.12, Created)
DT   04-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   DNA transposon from the Folsomia candida genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5300
RA   Kojima K.K.;
RT   "DNA transposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2496-2496 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.8% identical to consensus. 5-bp TSDs. 927/926-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           1960..4254
FT                 /product="Transib-2_FoCa_1p"
FT                 /note="transposase."
FT                 /translation="MEDERGVEESEEIGGVTQPFVGMEMSSNEPMNSSIGG
FT                 HSSTNDCSSTAMGSIQKSALVDIFKSGDLDFCCKAIKKIVGASMKPNLSDE
FT                 EEQKFRDLVCNEKSTFKALWQKANRMTDRFTQRHGTYLQSTFDLPTELRAT
FT                 SGMGVVGRPAVEYSALGVRRKRTKEKELSELLIDEPRDKILKSVTRALEGD
FT                 DPTDKDLRAIIKELLKSPTRPSKIREKLKAATPSPMSIEEAVSLMIDSRMP
FT                 VSTYEMLKRSADAHDFSLYPPYYLLRKYRKDFCRPAEQLELSDTLASVSLQ
FT                 ALLDHTVDRIFKLQQEPLLQFAEKLKNSTLKLQLIASWGFDGSTGQSQYKQ
FT                 RLNANENATDSGIFVTTMIPLQLQTEEGKIVWRNQAPQSVRFCRPLRIQFL
FT                 KETEDSIHAERNWVDSQIRNLVAHSITESGISASIKYSLHLTVIDGKVLSI
FT                 LSGASSHQVCPICGATPSEFNVLNRPLKPIPDCNLQYGISPLHAWIRFLEF
FT                 CLHLSYRNVDGIKTWRVKGGDKNPQLNERKRKIQEALWEKLSLRVDFPKPG
FT                 GAGSSNDGNTARRAFSIENQVVFAEILGIELWLVQDLHVILCVISSSLPVD
FT                 SKKFGEFCRPLADRYVKAYPWFYMPATLHKILIHGEQIISRSALPMGMLSE
FT                 QAGESRNKLYRQDREMHARKTSRKENLLDVFNRAMDSSDPFISELSMSQRR
FT                 EKSKKLPLPSAAIALLQAPDDPNPELPARQLYSEEDDDSEIESFKEVDGAL
FT                 DDVELVTEQIEADE"
XX
SQ   Sequence 5300 BP; 1582 A; 1100 C; 1155 G; 1463 T; 0 other;
     cacagagcga aataatccaa aattatcgga aacaattcca cgagcacttt tttaatgaaa        60
     tttttgcgta ctccgagttg ttgagggtga aggccaaaca tataaaaaaa ttgacgagcc       120
     acgcccactt tgggtgtggt tttttcctgg tagggttaga gccaaatggc atatcaaaag       180
     ttgtagctca tgcgatggta catctgcagt aaaaatttca tctaaatccg ttcacaaaca       240
     acaaagatat ccaatggcga aactcggcga cagtcaaaat gcgacgactt taggggcgtg       300
     gttctccgaa aggggcaagt acaatactct gaaaattatt gtaaattgta gtccccactg       360
     atcttaacga attcaaagaa aaacggagat cttgattctg cccctttcca agctataagc       420
     ccgggaacat tgggaacatt catggcgaaa ttgtccaaaa agggtgaaat ttgacatgtc       480
     gtatcgcagt aaaaatcgat atctagcttc agccaggtct aaaaagtgcg tcgcaggtga       540
     aattgaccca tgtcgtcagg gaagcatgtc gacgtgtcga aatttcgaca tggagctaga       600
     gaggtgaaat ttaaaactaa tactcccctg ccctccaaag tacatatgca aacacttttg       660
     atcatgtcga cacgccattt cgatagaaat cgacctttta atgtccaact ttgaaaatgt       720
     agatattggt ttcaaactca aaactcgtgc tccacaactt aagataccaa catgtaaatt       780
     aattttgact catgttgacg acttattctt gcgacaaatc atgtcgaaag tttaaaaatg       840
     gtttcttcca ttggaataaa caaaagcatt tctccgtagt acaatatact aataagtata       900
     ttgtatacgt ttaagttttt cgggtttaac cagttaagct actcatcaac acgacatcgc       960
     cgctgcaaga gtaaaaactg gcgtataccg cttcaacagg taaatgaccc aaccactgta      1020
     aaattattaa tttattaatt tattttgtgc atttgtagaa atctggtacg aatatgaacg      1080
     caaggggaca agaatttccc caatctcttt cttacgctgc catgggcgaa tttatcagga      1140
     actgatctgg acattataaa tattactata ttcttcagtt aggatcaata tctcttcgga      1200
     gaccactctc acggatggac atctgcaaac gagtaccact tgcgaggacc gccgtgatgc      1260
     caagcgcttt agacgtcatg ggctgggaca ccgtgtcaat catcaagaca ccgtgtcgac      1320
     cctcagcgag tccgcctcgc tataagggcg gcccccaagg cacaacttat acaagtttac      1380
     gccgcggtgc atcttatcgg actagatcag ccatcagcta ggcttttcag ttcgagatcg      1440
     caataccgcc cagctgagct ggaagtgaca ggaagagctc tgggtccatc tgaggtaatt      1500
     ctcagagtag gtggctcacg gcccgggttt catttccagt tcaactggag ccgcctcagg      1560
     gaagttgtgc acttgtggtg aaacattttt tatattaaaa aaatgattca tgacaccatg      1620
     tgaaccatca agacaccgtg tcaactggcg tcaaagggcg aagagcccaa tcctgttagg      1680
     attccttgcg ggaggaccgg gaagaggccc cagacctgtt aaataaaccc cggttccgtt      1740
     tgtaccccaa ggaggagcag gcaggtctga gctatggtcc cgggcacata aacattacgg      1800
     gccggaaaac gtgtagattt tgtgagtaat agaaacaagt taactctaac actttataat      1860
     ccacaggggt ggttcccctt caaggacact gtgagagctt gttacaaatt gtacttgtta      1920
     agcccttgtc tcgttaggtg ttgtggattt ttcgcaaaaa tggaagacga acgaggtgtg      1980
     gaagagagtg aagagatcgg cggggtaaca caaccgtttg tagggatgga gatgagctct      2040
     aacgaaccca tgaatagttc cataggcggc cattcttcta ctaatgattg cagttcaaca      2100
     gcaatgggta gcattcaaaa atcagcactt gttgacatat ttaagtcagg tgaccttgac      2160
     ttttgctgca aagcgatcaa gaaaatcgtt ggtgcatcaa tgaaaccgaa cctctcagat      2220
     gaagaagagc aaaagtttag agatctagtc tgcaatgaaa agtcgacatt taaagctctt      2280
     tggcaaaaag ctaatagaat gactgatcgc tttacacaaa gacatgggac gtaccttcag      2340
     tcgacctttg atcttcctac cgaacttcga gctacctctg gaatgggcgt tgtgggaaga      2400
     cctgcagtag aatattctgc tttgggcgtc cgacgtaaaa gaacaaaaga gaaggaactg      2460
     tctgagcttc tcattgacga gcccagagat aaaatactca agtctgtgac gcgtgctctt      2520
     gaaggagatg atccaacgga caaagactta cgggcgataa taaaagaact tttgaagagc      2580
     cctacccgtc catcaaaaat tcgagaaaag ctgaaagctg ctacaccatc gccaatgtcg      2640
     attgaagaag ccgtatcatt aatgatagat tcccggatgc ctgtcagtac gtatgaaatg      2700
     cttaagagat cggccgacgc gcatgacttt tccctgtatc ctccgtacta cttgttgcgc      2760
     aaatacagga aggacttctg tagaccagca gaacagttgg aattgtcaga cacattagct      2820
     tcagtttctt tgcaagcctt gcttgatcat acggtggatc gaattttcaa acttcaacaa      2880
     gaaccacttt tacaatttgc agaaaaattg aagaattcta ccctcaaact gcagttaata      2940
     gcttcgtggg gatttgacgg cagcacaggt caatcccaat ataagcaaag attaaatgct      3000
     aatgagaatg cgactgattc aggcatattt gttactacca tgattcctct acagttgcaa      3060
     actgaggaag gtaaaatagt ttggaggaat caggctcccc aatctgtaag attttgtaga      3120
     ccactaagaa tccaattcct aaaggaaact gaagattcta ttcatgctga acgaaattgg      3180
     gttgactctc aaatacgaaa tctggtagcc cactccataa cggagagcgg catttcggcc      3240
     tcaattaaat attcccttca tttgacagtc attgatggaa aggttttaag cattttgtct      3300
     ggagcttctt cgcatcaagt gtgcccaatt tgtggtgcaa ctccatcgga gtttaacgtt      3360
     ttaaaccgcc cattgaaacc gattcctgat tgcaatctcc agtatggaat aagcccactt      3420
     cacgcctgga ttcgcttcct cgaattttgc ctacacctta gctacagaaa tgtagacgga      3480
     attaaaacat ggcgtgtgaa aggtggagat aaaaaccctc aattgaacga aagaaagcgg      3540
     aagattcagg aagcgttgtg ggagaaactt tctctaaggg ttgactttcc aaaacctgga      3600
     ggtgcaggtt catccaatga tggaaatacg gcaagaagag ccttcagtat tgaaaatcaa      3660
     gtggtattcg ccgagatcct cggaatagag ttgtggctag tgcaagattt gcatgtaatc      3720
     ttgtgtgtaa tctcgtcgtc tcttccggtt gattctaaga aatttggcga attttgtcga      3780
     ccacttgctg ataggtatgt taaagcttat ccatggtttt atatgccagc caccctccac      3840
     aagatattaa tccatgggga acagattatt tctcgatctg ctttgccaat gggaatgttg      3900
     agtgaacagg ctggagagtc cagaaataaa ctgtatcgac aagaccgtga gatgcatgct      3960
     cgtaaaacaa gtcggaaaga aaacttgtta gatgtcttca atcgggctat ggactcttcc      4020
     gatccattca tttctgaact ttctatgagt caaaggcgag aaaagagtaa gaaattgcca      4080
     ctgccatcgg cagccattgc ccttcttcag gctccagacg acccgaatcc tgaacttcct      4140
     gccaggcaac tctattcaga ggaagatgac gattctgaaa ttgaatcttt taaggaagtt      4200
     gacggagctt tggatgatgt tgaacttgtt actgaacaaa ttgaagcaga cgaataaact      4260
     tctatatttt tgttcttggt caaatgaaga ctagtgggcc gattaccact ttaaaaacag      4320
     ggaccttcgg gtcggatatt acagctgtgt ccctgatgag gccagagcag gccgaaaccc      4380
     gaaaaacatt gctctattta atacaatgga agtatattgt actacggaga aatgcttttg      4440
     tttattccaa tggaagaaac catttttaaa ctttcgacat gatttgtcgc aagaataagt      4500
     cgtcaacatg agtcaaaatt aatttacatg ttggtatctt aagttgtgga gcacgagttt      4560
     tgagtttgaa accaatatct acattttcaa agttggacat taaaaggtcg atttctatcg      4620
     aaatggcgtg tcgacatgat caaaagtgtt tgcatatgta ctttggaggg caggggagta      4680
     ttagttttaa atttcacctc tctagctcca tgtcgaaatt tcgacacgtc gacatgcttc      4740
     cctgacgaca tgggtcaatt tcacctgcga cgcacttttt agacctggct gaagctagat      4800
     atcgattttt actgcgatac gacatgtcaa atttcaccct ttttggacaa tttcgccatg      4860
     aatgttccca atgttcccgg gcttatagct tggaaagggg cagaatcaag atctccgttt      4920
     ttctttgaat tcgttaagat cagtggggac tacaatttac aataattttc agagtattgt      4980
     acttgcccct ttcggagaac cacgccccta aagtcgtcgc attttgactg tcgccgagtt      5040
     tcgccattgg atatctttgt tgtttgtgaa cggatttaga tgaaattttt actgcagatg      5100
     taccatcgca tgagctacaa cttttgatat gccatttggc tctaacccta ccaggaaaaa      5160
     accacaccca aagtgggcgt ggctcgtcaa tttttttata tgtttggcct tcaccctcaa      5220
     caactcggag tacgcaaaaa tttcattaaa aaagtgctcg tggaattgtt tccgataatt      5280
     ttggattatt tcgctctgtg                                                  5300
//
ID   Transib-2_SIn repbase;    DNA;    INV; 3144 BP.
XX
AC   .
XX
DT   07-FEB-2012 (Rel. 19.02, Created)
DT   07-FEB-2012 (Rel. 19.02, Last updated, Version -1)
XX
DE   Transib-type retrotransposon sequence - a consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-2_SIn.
XX
OS   Solenopsis invicta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Solenopsis.
XX
RN   [1]
RA   Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S.,
RA   Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M. et al.;
RT   "The genome of the fire ant Solenopsis invicta.";
RL   Proc Natl Acad Sci U S A 108(14), 5679-5684 (2011).
XX
RN   [2]
RP   1-3144
RA   Jurka J.;
RT   "DNA transposons from the fire ant genome.";
RL   Repbase Reports 14(2), 351-351 (2014).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           417..2597
FT                 /product="Transib-2_SIn_1p"
FT                 /translation="MDEYTHKDRNTDDNLDPRAGSSHDLGRTGHQVTLPEI
FT                 VLEADGLPVGSSSCSWTGDTIPSGNEGRCNIDFTIGMDTMENSVLDPPGNI
FT                 AVAPEISVGRKRHIQNVSKRYLFETFFFNKDVRGCYRYVLEHLGQEIDEEQ
FT                 EKILLQTVRSLFSRYKNYFNNVGQHRRLFITKYKKWLDSNFIYPENVLQKP
FT                 KKMLMSKSGRLEKKFSEKSLGSQRRDASKLSTEVSNNTLQLLMAAKVSAKR
FT                 NKDNDLASVISEVLKTPTIVKKIRTSLTENNVVIKATPAEAMAYLIDNNLS
FT                 KSQYHHMHMESKRRNADIWPRYELVRMEKEQCYPKGIIVSDITATVPLQNF
FT                 LEHRVKRLIEMQVEVIEADMQQKSLQCVEATLISSWGFDGSSDHSTYNQHF
FT                 NSSGESVGKTDTNLIATTTIPLRLVAKHGAIYWCNRTPQSIRFCSPIMLEY
FT                 KKETPENIIATNEKMKEQIKNLRPITYEFSSGNRKIIVSCSFFCTLIDGKV
FT                 LSILTGSSGFANCPICHAKPNEMNEITNFGTPAFEPKXDTLQYGLSTLXMW
FT                 IRFFECLLHISSRIELKVWKVTGDKAKNIIKERKKQIQERFREKFSMSVDQ
FT                 PRSGGVGTSTTGNVSRRAFEKPELSAEILDLDVTLVKNFRTILLVLNSQLP
FT                 VDPIKFQKFCFDTAKIFNKKYGWYKMPSAVHKTLAHGAQIMLNSLLPVGVF
FT                 GKDAAESRNKYYRNDYITQEKRVELII"
XX
SQ   Sequence 3144 BP; 1113 A; 497 C; 600 G; 930 T; 4 other;
     ggggtttttg aggttgctga ttttgaatat gacattaaaa attagaaata caaaatggcg        60
     gatctaatat ggcgcccaaa aatatgaaaa attgctcctt tgcaaaaaaa tgaaacgtaa       120
     gcggtgtccg aggggttttt aagttcgcta aattctaatt tgaaatcaaa ataaatgtat       180
     atagaaagta taagaagaaa tgcaaagtat atagaagaaa tgcaatcgtt atgatgtaaa       240
     tatatgtatt tcgtgccttg tgggtatgtc atccattctt aacctttaag atctccggta       300
     aagggcttta cagcctactc gtgatgattc ctaaatggag ggtaaggaag agccccggtg       360
     ctgtaaataa acccttaccc gatgaaattt aggatgaacg ggcagcactg aggagaatgg       420
     atgaatatac acacaaggac agaaatactg atgacaactt ggaccctaga gcgggtagct       480
     ctcacgactt gggtagaacc ggccatcagg tcacccttcc agagattgtt ctggaagctg       540
     atggattgcc agtaggctca agttcgtgtt cctggactgg tgacactatc ccttctggaa       600
     acgaaggtcg ctgcaatatt gactttacca taggaatgga cacgatggaa aattccgtgt       660
     tggatccgcc gggcaatatt gcagtagcac cagaaatctc cgttgggcgg aaacgacaca       720
     ttcagaatgt ttcgaaaaga tatttatttg aaacattttt ctttaataaa gacgtacgag       780
     gttgttaccg gtatgtctta gaacatcttg ggcaagaaat agatgaggaa caagaaaaga       840
     ttcttttaca aactgttcgt tctttatttt ctagatataa aaattatttt aataatgtag       900
     gccaacatag aagactgttt ataactaagt ataaaaaatg gttggacagt aatttcattt       960
     atccagagaa tgttttacaa aagcctaaaa aaatgttgat gtcgaaatca gggcgtcttg      1020
     aaaaaaaatt cagcgaaaaa tcactgggat ctcagagaag agatgccagc aagttgtcaa      1080
     ctgaagtaag taacaacacc ttacagcttt tgatggctgc aaaagtatca gcaaagagaa      1140
     ataaagataa tgatttagca tccgttatta gtgaagtgtt gaaaacccct acaattgtta      1200
     agaaaattag aacaagttta actgaaaata atgtagttat aaaagctact cctgctgaag      1260
     ctatggctta tttaattgat aacaatttat caaaaagcca atatcaccat atgcacatgg      1320
     aatctaaacg acgaaatgct gatatatggc caagatatga attggtacga atggaaaaag      1380
     aacagtgtta tccaaaaggt ataatcgtct cagatataac agctacagtt ccacttcaaa      1440
     atttcctcga acatagagtg aagcgcctaa tagaaatgca agtagaggtt attgaagctg      1500
     acatgcaaca aaaatctttg caatgtgttg aagctacatt gatatcatca tggggttttg      1560
     atggatctag tgatcactct acttataatc aacactttaa tagttcaggt gaatcagttg      1620
     gaaaaacgga tactaacttg atagctacaa ctaccattcc attacgttta gttgctaaac      1680
     atggtgcaat atattggtgc aatagaactc cacaatcgat aagattttgt tcgccaataa      1740
     tgttagagta taaaaaagaa actccagaaa atattatagc gacaaatgag aaaatgaaag      1800
     aacagattaa aaatttgcgt ccaattacat acgaattttc cagtggcaat agaaaaatta      1860
     tagtctcctg ttccttcttt tgtactctta tagatggaaa agttttaagt attttgactg      1920
     gatcttctgg atttgctaat tgcccaatat gccacgccaa gccaaatgag atgaatgaaa      1980
     ttacaaattt tggtactcct gcattcgaac cgaagncaga tacattacaa tacgggttgt      2040
     ctacactaca natgtggatt agatttttcg aatgtttatt acatatttct tctcgtattg      2100
     aattaaaggt ttggaaagtt acaggagata aagcaaaaaa tattataaaa gaaagaaaga      2160
     aacaaattca ggagcgattt cgagaaaaat tttcaatgtc agtagatcaa ccaagatcag      2220
     gaggtgttgg aaccagtact actggaaacg tttccagaag agcgtttgaa aagccggaac      2280
     tgtcagctga gatattagat cttgacgtaa cgttagttaa aaatttcaga acaattttac      2340
     ttgttttgaa cagtcaactt ccagttgatc ctattaaatt tcaaaagttt tgttttgaca      2400
     cagcgaagat ttttaacaag aagtatggat ggtacaaaat gccatcagct gttcataaaa      2460
     cacttgctca tggagcacag attatgttaa actctctgct tcctgtaggc gtcttcggaa      2520
     aagacgcagc agaaagtcgg aacaaatatt atagaaatga ttatatcacg caagaaaaac      2580
     gagtagagtt gataatttga cagatatgtt taaacgtgcc ttagtaagtt ccgatattat      2640
     aatttcaagt attagcttac aaaaaagaat taatacaaga aagcgtaaac attttccacc      2700
     agaggttata gattccttag ttattaatga tacagacttt gacattaatt taaaaggtaa      2760
     tgatatttta gatgttacta gcgaaactga agacgaagac gagttcaact tcgagcttga      2820
     aaatatagta tttcacttag acgatcttga tatagaaatg gaagacaaaa atattgaata      2880
     agtcgttatt aattaataag tttttacagt catttttaat ttcatttgat cgattataat      2940
     tttgtcgggc gccatattgg atccgccatt tggtatttat aatttttagt catattcaaa      3000
     atcagcgacc tcgaaaantc tttagaaacc ccctaggttc natttttatg caagttttac      3060
     tacttttggg cgccatattg gatccgccaa tttgtatttc taatttttaa tgtcatattc      3120
     gaaatcagcg accccaaaaa cccc                                             3144
//
ID   Transib-3N1_DSuz repbase;    DNA;    INV; 1774 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-3N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1774
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 89-89 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1774 BP; 596 A; 261 C; 291 G; 620 T; 6 other;
     cacagtggtt ccgtcagagg ccaaaaatca aaaaaaccga tttgaaaata tttaaattaa        60
     atttacacag cttgtctcta aaatgtccaa tcttccaatt tgcaaaccgg ttttcgctgg       120
     aaacccaacg gtacattcta aaaatagaat caaaagcatg aacacgtgtt catttcaaca       180
     gcgcatcgga gctgtggtga aatatttcaa agcaaaagcg cacttcaaat cggactggta       240
     actgttcaag ttgataaatt tatattattc aaaatggatt ttgaagctca aggtatttat       300
     tttactttat gaaattaatt tatactaact tgatatgaaa ttaataaaat ctaacttgat       360
     atgtgaaacc tctttgtttg tacctgtttt gtgtgtctca aatttgttta cctaaagttt       420
     tagttgtgat cccacacgat tccaaacaag gacttttttt ttatatttat cagagtttta       480
     agatttwaaa atcgttaaag ttaggtgcgg aatgttgcga atgtagttgt aatcgttaat       540
     atgctaacac gacttcttat tttttcaagg tcaaattttg ccagcgcgct gcagctgagc       600
     ccctgtgtcg tcttttgwgt ctctgttttt gttgtgtctt tgtgttcgtc ttttgtgatt       660
     gtttacagct tctatttgtc agtttatttc ttttacttaa aattattcta attatttttc       720
     cgtttttctt ttataatttt tgtttacaaa ataaatttgg acaaatttaa tgaatatgcc       780
     atcgatactg ctaaggaatt gataaaagag tatccatggt actgtttgac agctacagtc       840
     cataaggtgt tagttcatgg atcttctgta attgagcatg cactcgtgtc aatcggagag       900
     ctttcggaag aagctgccga gtctaataat aaggaattaa aaaaatgtag attgtatcac       960
     agccgaaaaa tgtcacggat tgcaacaaac acagacatat tgaacacact cattttacgg      1020
     tcggacccat ttataactgg gcaaagaaaa catggaaaga aggataaatc aackttactt      1080
     gaatctgtgt tcaacttact tgaagaaaca ttataaatct ttgttataat tatattaatt      1140
     cgttaatagc tttgaaaata tcaatataat aaattggctt acaatatgat tgtttaattt      1200
     atgatttttt kagtatgata ttattttagt aggtgtatag cttgagaatt agacggggga      1260
     agatatttaa atttatgaaa tataaacaaa atagttgatt tttcctatgg cagcaaatgt      1320
     aaaactacac caaccttata gtctgggagt ttagataaca tacctctaaa aataagaaaa      1380
     aatttaattt tctatttaag ggggtcttct cattcaaaac ccgttwtttk gacccttttt      1440
     aaaaaaattc ttatttgaaa acgcaaaaaa taattgaaaa ctttttttat ttattgtatt      1500
     acaaaaggtt caaagtaaat aaaaaaaaaa attgcctcga tacgagggct gttcaaaaag      1560
     taatgagact tcaaagttgg tggtggaaaa aaaaggtgtc gtcacggcgg cgatcgttcc      1620
     tatagcagct atatcatata gacgtacgat atggccattt cttataacat acatatattt      1680
     ataatatttt tttttaattt tggggaaaat tttgtaacaa tataacaact aaaagtaatt      1740
     atggccgcag ctccatacaa gccgaaccac tgtg                                  1774
//
ID   Transib-3N1_DTa repbase;    DNA;    INV; 1646 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   08-JUL-2021 (Rel. 26.09, Last updated, Version 2)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-3N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1646
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4706-4706 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1646 BP; 578 A; 254 C; 233 G; 581 T; 0 other;
     cacagtggcg ccttgggcca aaaaacgtgc aataaatcac tttttcgact ttgtcctaga        60
     aagttgtgac ccataccaat cgacaggtaa ttgatccact attacaaata tgtaaccctt       120
     tttcaaatca aaaaattttt gtaaaagata tgaattttca aagttgaaca atttttcact       180
     taaaaaaaac acaccgtttt taggtaattt ttcgcacttc cggggggttt ttcttaaaaa       240
     ctaggtatcg aatcgctttg cttctttttt ccacggattg gtgtgttagt taagagtaaa       300
     aaaagtaaaa catattgcag tttgccatgc gcatctctta gttatgagtt atttgcgaaa       360
     cgtccatttt ttccatattt ttcaactttg atggaaaata aaaaaaaact atttaatact       420
     atttttttta tacttccgta aaacgttatt tggactttct tcttgatatt acgaaagttg       480
     tagctgcgtc cgcctgcgtc cgcggtttta agagccaaaa aagggaaaaa agtcatggtc       540
     ccagaaattg catatggcgc aaccttgtga aagatttgtc caaaacatgg ttttaaagtc       600
     ctgaaaattt tatatgatgt tcaacagctc gatataagaa attttagttc taccactttc       660
     ggaaaaactc gctagtttag cgggaaaaca gctataaata gctaaaatac ggaaggccgt       720
     aacttctaaa ctacagaagc aacagacttg tgctgtatct cgtttgaaag gtttttaaaa       780
     aagctttaag cgcctcctaa atgtagtttg tgtaaatgta atattgaaaa agatatgcac       840
     aaaacaattt ttttttaaat ttttttgttt agtttttttt atttttctcg aaaacggctc       900
     taacgatttt ctttaaaact ttaaactgta tagcccttga gattccttaa attttggtat       960
     atatcatgtt actgtaaaaa atcacgttta aatgttattc agaaacgaaa atagccactt      1020
     ttgccagctc aaaacaactt acgctgccta agcattgaat ttagtatgtg cgaatccaaa      1080
     ctgtattcta gggtcatgga atcacaacct tgtcacagag ttagaatcta gtaattatag      1140
     tccagaaatg ttaagtctat tggatttacc aagtttacca aattgtgacc attatttcaa      1200
     aaaacatgaa atataaaaat ttttattttt aaaaaaaaac tttaattttt tttttttttt      1260
     tttttagttt ttaaaaatta aaacataaaa aaataaacta aacaaaacgt aatttttaaa      1320
     aaaaaaaaaa attttttttt aaaaattcca attttttatt tatttttttt taataagttt      1380
     taaaaattac aacatgaaaa aagaaactaa aaaaaacaaa aactttttaa aaaaagtttt      1440
     tttttgtcgg aaaaaaatgg atttgttttt aaattctgac tttgccgatt tgtaagtacg      1500
     cctctgccac gcccactccc tgtctcaagc aataatttga aaggtggatc aattatctat      1560
     catttgccgt ttacaaaatt caattatctt cactggttca aaagttatga tttattacca      1620
     aaaaaaagtc aaaaggcgcc actgtg                                           1646
//
ID   Transib-3_CoFl repbase;    DNA;    INV; 6495 BP.
XX
AC   .
XX
DT   24-OCT-2019 (Rel. 24.11, Created)
DT   24-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-6495
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2115-2115 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp, CG-rich TSDs. 980/977-bp TIRs.
CC   The exon-intron structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2475..3153,3582..4022,4368..4956,5015..5102)
FT                 /product="Transib-3_CoFl_1p"
FT                 /translation="MSSNVKGGRPRKKSKISINTGRKRRSNEGASRMTVHR
FT                 RALEIATAAENNISVLELALKQAKKHNNDNLSEDESNILSDTKRDDMHSNE
FT                 SALAFYIEHDYSKRKYLALVKDVKEHGSQIYPSYDKLSIAMKACKPNECSI
FT                 SEVEICTPLQSILNKTGERLCNSVALDWSKDALKNLELHVTLGFDSSSGYN
FT                 NSHQRFENKSNENLQAQYSLFVSSCLIIQLKCTTNSEIFWWNPTPQSYRFC
FT                 RPLRLAIEKEDDETSVQEYCRLKNEIQTLKQHMFLLTNGKAVKMTYIVFKT
FT                 MFDGKALNSIVSNKSSSSCPMCLISSYRFKNLDDNCTPTESSLKHGLSLLH
FT                 CEIRSFEHLIRLAERIKLNLSLWDIPKSKKDDLKKESIIIKEKIYEKFHVR
FT                 IDQILQGRGTSNTGNIARRCFQYPEMFAECLGILPEIVINIALILSAFKCC
FT                 KNLNLEELEQFSHETYNLYYKTYPFARMSPTVHKLLKHGCAIASQFPLPML
FT                 FYSEDANESWHRLYRKNQTSHARQISRKAKLLDIFNRALYCSDPFISLILI
FT                 DERMRKSKNGCAALDIRRFLADSEKVDDDKSYDERYSDDMTDSQSEAERDY
FT                 *"
XX
SQ   Sequence 6495 BP; 2304 A; 968 C; 992 G; 2231 T; 0 other;
     cacagtgtgc gaatttgcat ttttttgtat caaaattgta aatctcgaga caggataaag        60
     atatcactat gatttttttt catcttacag gtaattggac taggtataca aaaaaacaat       120
     gcgtgatatt gttatagaca attatattta tcataaacat tggaaaaatt actataaaag       180
     attaaattct ttataaaatt cctgttttca atacaatttt ctcgaaattt accacaagag       240
     ggtttttggg gtcgctgatc acgattctga ggttagtttt tgtaaattta aaatggccga       300
     tccaatatgg cggcaaaaaa tcgggaattt cataaaaatt tgaatttaat tgttgaagtt       360
     gttattgtta ggcttttggg gtctctgatt acgaacctga ggttagtttt tttgtaaatt       420
     caaaatggcc gatccaatat ggcggacaaa aatcgggaat attataaaaa tttgaactta       480
     gttgttgaag tagttattgt ttaagttact tataccaaat tcaaggtaag actagtaatg       540
     aaaaaaatgg ttgattcaat atggccgaca aaattatgca tttttctgaa ttaaagtaaa       600
     tttatttttt ttattaataa acgtacgtaa tgagttatgt tcacatgcta taatctccta       660
     tataggtata tacgtattgt ctaagctagg gcttgcgtaa catgagttgt atgcacgaaa       720
     ttcaaaatgt ccaatccaat atggcggacg aaaatgtcta tataaaatgt ctaaatatat       780
     aattggtttg taactacaat caaagttttt tttttaattg cttatagcga atttgaggtc       840
     tgatccatgt gttaccatat atacgattta atatggccaa aacaatcgta acattgtttg       900
     aattttaata caaaatttca ggttaaagaa atggaagaat tacagttcgc tcgcgaactt       960
     ttatctatgt ggattcagat gaaaagttag ggttagatat ggcaaaatcc tataaaaaat      1020
     ttatttcatg tattttttat aaataaatac aaattatcac tcactagaca agccagaggc      1080
     gctttatgcg ttctccttaa attttgcata aatttgaaac gttttccggc tatttatgta      1140
     gctaaaaaaa acacgcatca tacgtaacct atatatttgc attactggtg cattaaggat      1200
     tattcatatt ttttatttta ttcctgttat ttaatcaaga ataagttaat atacaagttt      1260
     ttacaatgaa ctttgacata actatatcgt aaaaacttca actaaaaact ttagctatat      1320
     tattatcttt tttatccgcg gtttttcttg aatatggtca tgtaagcatc cccagccaat      1380
     cacatgacga ataaacggct ttatacgaaa taacttacct ttttgagata ggttttttga      1440
     ttgcgctcat gagtgttctt ttctcaactc gaaagaattt actttaaaat taagcagtta      1500
     taagcggttt tttattattt taaatgtaca acaagttagg atgaatctca aagctatgta      1560
     cttacattcc caaattataa caagtaaatt ttaatatagt agcacttact tgcgttacaa      1620
     gcatatgctc aatttatagt tcagcattta ataagattct actagcgtgg tggcagttta      1680
     tgaccatggt tgttggtaaa aagtattttt tctctataaa ttttaatcat gcatattggt      1740
     atgcccggat cattgtgcat aaaaaaatta gtagagaaaa aattcatatg actgtgcata      1800
     aagcaaatga attaaaaaaa attttttttc taacaaccac gtacctaaac tgccaccacg      1860
     ctaatagaat cttattaaat gctgaattaa aaaatcagca tatgcttgta acgaatgtaa      1920
     gtgctagtaa aaatttgctg ctattctaaa aagagtaaga taacttttga gtaggaataa      1980
     gcaagtttta ctgtaccatt ttgtgtttct tattttactt gcatcaaata tgtaatctta      2040
     tgtgatgagc ttgcgttgcg tgttgatatg caaacagaat attcttacaa taaataatat      2100
     aatattagga cgaaaaatga atcaaataat atttatcaag ctctgcatta aatattggta      2160
     agttcggatt ttattaatat atcttcaatt aaatctaaag actctttaca aataaaatat      2220
     gcattactac tagtttttac tttcacaagt aaatttttcc gttatttttt ttaatgctgg      2280
     tttaaactgg aaggctttct gcttctgtaa tagtttaaac tgtgaaaaga tatgaaactt      2340
     ataacatcga cttaggcttt cagattctaa aatttcatgt acgatttttg cttagatgaa      2400
     tacaaatgcg tatattttgg gtattcgcat aggcctacag ttagtcttat tgtcaataaa      2460
     cattacaaca gacaatgagc tcaaatgtta aaggaggccg gcctcgaaaa aaatcaaaaa      2520
     taagcattaa tactggtcga aaacggagaa gcaacgaagg tgcgtctcga atgactgtac      2580
     atcgacgtgc attggaaatt gcaacagcgg ctgagaataa catatcagtg ttagagttag      2640
     ctttaaaaca agctaaaaaa cataataatg ataatttgtc tgaagatgaa tcaaacattc      2700
     tttccgatac aaaaagagac gacatgcact caaacgaatc cgcattggct ttttacatcg      2760
     aacatgatta cagcaaaaga aaatatcttg cattagtgaa ggacgttaaa gagcatggca      2820
     gccaaattta cccaagttac gataaattaa gcattgctat gaaagcatgc aaacctaatg      2880
     aatgcagtat ttctgaagta gaaatatgta caccgttgca gagcatattg aataaaactg      2940
     gagagcgttt atgtaactcc gtggctttgg attggtcaaa agatgctttg aagaacttgg      3000
     agcttcatgt aactctgggt tttgatagct cctctggtta caacaacagt catcaaagat      3060
     ttgaaaataa atccaatgag aacttacaag ctcagtattc tctttttgta agcagctgtc      3120
     ttattataca gctgaaatgt acaactaatt caggtatttc tgagctttga aactgtatta      3180
     atttagatga atataatgtt ttcatataca aaaccataaa tcataacatt attgacaatt      3240
     ctatttccga taaaattact ggttaaacca taaataatgt aaaacagtag taaaattaat      3300
     aatatttcaa aatattataa gttcacttct acaattacaa tttttttaga caaaaataaa      3360
     gtttaacaag atcttgatat tattttcttt actttttatt agttcaacac attttttatc      3420
     gtctgaatat tgtctcttta ttgtctattc ttcatcttgt ttcgagaatt agatacaaga      3480
     gcgagcaaac taaaacttta ttcaagtctt gtgcaagcta ttatgtaaat tatatgtatt      3540
     atagatagag tttaatttta cttcttggtg tttatatcta gagatttttt ggtggaaccc      3600
     gaccccacaa agctacagat tttgcagacc attaagattg gcgatcgaaa aagaagatga      3660
     tgaaacatcg gttcaggaat attgtcgact gaagaatgag atacagacac ttaaacaaca      3720
     catgttccta ttgacaaatg ggaaagcagt taaaatgact tatattgttt tcaaaaccat      3780
     gtttgatggt aaagctctca actcaatagt cagcaataag tcatcttcat cctgcccaat      3840
     gtgtttaatc agtagctata gatttaagaa cttagatgac aattgtactc caacagaatc      3900
     gtcactaaaa catgggttga gcttacttca ctgcgaaata cgatccttcg agcatttaat      3960
     tagattagct gaacggataa agttgaacct gtcactgtgg gacattccaa aaagcaaaaa      4020
     aggtataacg actacttaac tgcttaaatt ttatctctaa gtccacaatt aaggtgcaag      4080
     accaaaaaat atggtcaaaa gaatcgtaac aatagattaa gtgttttttt actttctcat      4140
     aataaacctt gtttttgttc tataatatct ttttattacc taattattat ggagacctta      4200
     gataattatt acaaatttcg tgtgatacat atacaataaa gagcatcctt aaatgaattt      4260
     tcataataat gttaatttat attaattaaa tttcaatcat tacgcctttc ttaagataat      4320
     attattttgc aatccataag ttttaaagtg tgttcattat tttgcagacg atttaaaaaa      4380
     agaaagtatc atcattaaag aaaaaatcta tgaaaaattt catgttcgca tagatcaaat      4440
     tttgcaaggt cgtgggactt cgaatactgg taatatcgcg aggcgatgct ttcaatatcc      4500
     agaaatgttt gcagaatgcc taggaatttt accggaaata gtaattaata tcgctctaat      4560
     attatcggcc tttaaatgct gtaaaaattt aaatttggaa gaactggaac aattttcaca      4620
     cgaaacgtat aacttatact acaaaacgta tccgtttgca agaatgagtc ctactgttca      4680
     caaattgtta aagcatggct gtgccattgc aagccaattt ccactaccca tgctttttta      4740
     ttccgaagac gcgaacgagt cgtggcacag gttgtatcgt aagaaccaga cctcacacgc      4800
     acgacaaata tccaggaaag caaaattatt agatattttt aatcgagccc tttactgtag      4860
     cgatccattc atttctttaa tattgattga cgaaagaatg agaaaatcga aaaatggttg      4920
     tgcagctttg gatatcagaa gattcctcgc agacaggtaa gttaaaacaa taagatcgtt      4980
     gaattcatca catattaatt agttcttgtt ttagtgagaa agttgacgat gacaaaagtt      5040
     atgatgaaag atatagtgat gatatgaccg actcacagag tgaagctgaa agagattatt      5100
     gaatgttatt aaagattata tataactcac tattttttta tgtttaaaat acttattgaa      5160
     aaatatatga ttaactcgat tacagcgaag tatgtattct gtttattaga ttcttaatct      5220
     attaccttat tattggcctc aagcaaaatt ttacaaaatt attaagaagc tctcatcatt      5280
     tttgaaactc ctcttcatgc tattattggt atgttataca taataataga taagttagta      5340
     gattttcatg gacatgcaac atttaatttt aaaaaggaat gttacatctg taaccgaaga      5400
     aagaaaaata agtcaattta ctgatgttct atcatatatt tagatgtttt gattttgcct      5460
     gcaaaataag aaaagcagtt attaattaaa gttatcgaat atccgaccct gagttcttat      5520
     ctgaatccac atagataaaa gttcgcgagc gaactgtaat tcttccattt ctttaacctg      5580
     aaattttgta ttaaaattca aacaatgtta cgattgtttt ggccatatta aatcgtatat      5640
     atggtaacac atggatcaga cctcaaattc gctataagca attaaaaaaa aactttgatt      5700
     gtagttacaa accaattata tatttggaca ttttatatag acattttcgt ccaccatatt      5760
     ggattggaca ttttgaattt cgtgcataca actcatgtta cgcaagccct agcttagaca      5820
     atacgtatat acctatatag gagattatag catgtgaaca taactcatta cgtacgttta      5880
     ttaataaaaa aaataaattt attttaattc agaaaaatgc ataattttgt cggccatatt      5940
     gaatcaacca ttttttttat tactagtctt accttgaatt tggtataagt aacttaaaca      6000
     ataacaactt caacaattaa attcaaattt ttataatatt cccgattttt gtccgccata      6060
     ttggatcggc cattttgaat ttacaaaaaa actaacctca ggttcgtaat cagagacccc      6120
     aaaaacccaa caataacaac tttaacaatt aaattcaaat ttttatgaaa ttcccgattt      6180
     tttgccgcca tattggatca gccattttga atttacaaaa actaacctga gaatcgtgat      6240
     cagcgacccc aaaaaccccc ctgtggtaaa tttcgagaaa attgtattga aaacaggaat      6300
     tttataaaga atttaatttt tttccaatgt ttatgataaa ttataattgt ttataacaat      6360
     attacacgat tgcctatagt ttttctgtat acctagtcca attacctgta agatgaaaaa      6420
     aaatcgtagt gatatcttta tcctgtctcg agatttacga ttttgataca aaaaaatgcg      6480
     aatttgccca ctgtg                                                       6495
//
ID   Transib-3_DAn repbase;    DNA;    INV; 2964 BP.
XX
AC   .
XX
DT   03-JAN-2012 (Rel. 17.03, Created)
DT   03-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2964
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 279-279 (2012).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. ~50-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           773..2620
FT                 /product="Transib-3_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MWLAGNMTIRLFDINESPQKKGGRPKLTYEAAGKRLK
FT                 IKLASELAIENQNSTPLLLHAANISARKSTENEVIKKSDRTGLLAPSPITP
FT                 EKAFAFFMENGFTKQQYINVKQLSKQHGCDIYPSYSKIAEEKLKCRPAGIE
FT                 CTENEAKVSMQNLLNHTASRILLMQKEVCEILSDVTQCTLIFSYGFDGSTG
FT                 HSLYKQKLSIAESQSLDDSLFVTSIIPIKMIDQKQRVIWLNKSPQSIRFCR
FT                 PLKIAYLKETTSLILEEKENLDNQIKNLDLYVHAFQSNAIFVKFDGHLTLI
FT                 DGKVLNILTGTNSCQSCPMCGAKPTQLLTTSDFYSKIFVMKPHTDQYGLSS
FT                 LHAWIRFFEFLLKISYRIELRKWHVKGNDKIELEARKYKVQAAFWKDMGLH
FT                 VDKPRQNGSGNTNDGNTARRAFSNPKLLSSILGIDHNLIQRLHIILIAINC
FT                 HYPINSEKFKLFCFETFTIYRSNYFWYPMSPTVHKILVHGYIIIEKSIVPV
FT                 GSLAESASEARHKLFKADRQNHARKCSRIDNMSDVFHRAMDSSDPLLSSSW
FT                 FTKTNRMPLPAEVVDLLDSPIISPGVGHKNGSTSQNSCAEDTDEENGNDDV
FT                 SDTFEIELEEEVPDDIEN"
XX
SQ   Sequence 2964 BP; 1046 A; 516 C; 515 G; 887 T; 0 other;
     ccgatgcaca atgggtaaaa aatccgattt tggtgcataa acctattttt tttcctaatt        60
     aatttttatg aatgacccat actaatcgaa tctagatatc ttcatttgaa aaaacccgct       120
     ttcaaaacat ttttggtggc aaccctgtag tgttgccact caaacaaatt tagctgcttg       180
     agagaccctg caatgttgtt aaattggcgc gaaaaactgg taaactttga gtgcttgctg       240
     ctttgtgtga aaaaaaagtt ttaaaaatct aaaaatggaa attccttgcg aaggtaatta       300
     ttaatgcaaa ttagcttaaa catttgttgt tatatgtctt gttgtccaac tgtgaactgt       360
     tttatatgtg tatcttttta gatttgaact aacaattgtg tttgtgtttt gtggagaata       420
     acttattaat ggcacagcct tgcaaaagag taagaacgag aaattaacta caaaagtgtc       480
     cttgttgtca tacaattaac catttttgct cctttttgct cctttttggt aaacttgcgt       540
     ttatccaggc acatatgtgt ttggtcacgg ggctcttctt gcaatttggg aaagcaacaa       600
     acgctcgcga gaagccttgg agacttacat attcgacaaa ttgaatgacg atcatcaaat       660
     cgaaacaata aaccaaaaaa tatcaaataa aattactaac tttattaatt acattaataa       720
     acatttgcca cgatgctgcc gaaacataaa gcgatttaga caaaaacacg ccatgtggct       780
     agccggcaat atgactatac gactttttga tataaatgaa tccccacaga agaaaggtgg       840
     tcgtccgaaa ttgacatatg aagctgctgg taaacgactc aaaataaagc tggcatctga       900
     acttgcgata gaaaatcaaa attcaacccc tttgttacta cacgctgcta acatttctgc       960
     cagaaaatca actgaaaatg aagttataaa aaaatctgat agaactggat tgctggctcc      1020
     gagtccaatt actcctgaaa aggcattcgc tttttttatg gaaaatgggt ttactaagca      1080
     gcaatacata aatgtaaaac aacttagtaa acaacatggc tgcgacattt acccctctta      1140
     ttcgaaaata gccgaggaga aattaaaatg tagacctgct ggaatagaat gcaccgaaaa      1200
     tgaagcaaaa gtttccatgc aaaacttatt gaaccatacc gcttcaagaa tattactgat      1260
     gcaaaaggaa gtttgtgaaa tactttcaga tgttactcag tgtactctta tttttagcta      1320
     tgggtttgat gggtctactg gtcacagttt atacaaacaa aaattaagca tcgcagagtc      1380
     tcaatcttta gatgattctc tatttgttac atcaattatt cccataaaaa tgatagatca      1440
     aaaacaaaga gtcatttggt taaataaatc gcctcagtcc atacgatttt gccgtcctct      1500
     aaaaatagca tacttaaagg aaacaacgtc tcttatatta gaagaaaaag aaaacttgga      1560
     caatcagatt aaaaacctgg atttatacgt gcatgctttt caatcgaatg caatttttgt      1620
     aaaattcgat gggcacctaa cacttataga cggcaaggtc ttaaatatat taacaggaac      1680
     aaattcctgc cagtcgtgtc caatgtgtgg ggcaaagccc acccagcttc ttactacaag      1740
     tgatttttat tccaaaatat ttgttatgaa gccacatacg gatcagtatg gattaagttc      1800
     ccttcatgca tggattcgct tttttgaatt cttgcttaaa atatcataca gaattgagct      1860
     tagaaagtgg catgttaagg gaaatgacaa aatcgaattg gaggcacgaa aatataaagt      1920
     tcaagcagcg ttttggaaag atatggggct tcatgtggac aagccgagac aaaatggcag      1980
     tggcaataca aatgacggaa atacggcgag gcgggcattc tccaacccaa aattattgtc      2040
     ctctatacta ggaatagatc acaatttgat tcagcgccta catataattt tgatagccat      2100
     aaattgtcat taccctataa attcagaaaa gttcaaatta ttctgttttg aaacttttac      2160
     tatatatagg agcaattatt tttggtaccc catgtcgcca acagtacaca aaattttagt      2220
     acatggatac attatcattg aaaaatcaat tgttcctgtt ggctccttag cagaaagtgc      2280
     atcagaagca agacacaagc ttttcaaggc tgaccggcaa aatcatgcca gaaaatgtag      2340
     ccggattgac aatatgtcag atgtctttca cagagctatg gattcgtctg atcctttact      2400
     gtctagttct tggttcacaa aaaccaacag gatgcctctg ccagcagagg ttgtcgatct      2460
     tttggattcg ccaatcatat ccccaggtgt tggccacaaa aacggaagta catcccaaaa      2520
     ctcgtgcgca gaagacacag atgaagaaaa tggcaacgat gatgtaagtg acacttttga      2580
     aatcgaatta gaggaagagg taccagacga tattgaaaac taaaacacaa ggaaaagagt      2640
     aagttaaaat ttttaagtta ttaaaaaaat gttatccaat tttttttcag tgtttgtaaa      2700
     atttaacaat agattctaaa tacgtaacag attttaattt tatttttcta taatgtaata      2760
     ccaaatgtga ttcaaattat aatttgtaac aatttcttaa ataaaagtga atttttaacc      2820
     actgagcggt acgcaaatta aaaaaaaaac aaaaaccaaa attttgtttt agttaaaata      2880
     atacaacaaa aaaagtttca agtcaatatc ttataaacta gagtttatgc accaaaaacg      2940
     ggatttttgc ccacagtgca atgg                                             2964
//
ID   Transib-3_DBi repbase;    DNA;    INV; 2472 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-3_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2472
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 744-744 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           1144..2283
FT                 /product="Transib-3_DBi_1p"
FT                 /note="transposase."
FT                 /translation="MFDGSIYKQKFDTKTTGEQLSDHSIFVTSVIPIKIID
FT                 AFDHNIWNNRTPQSIRFCRPLKIELVKETTAHIMMEKNFLDSQINNLKPSV
FT                 YKFNENRDITVNYEMHMTLIDGKVLNVLTGTTSTQCCPICGVTPTKILEIK
FT                 DFNSKHFVPKPGALQFGVSPLHAWIRFLEFVLNISYKIELKKWHIKGDDKI
FT                 EMSKRKKYVQEKFWNEMGLRISMPKQNGSGNTNDGNTARRAFANTKLLASI
FT                 TNFNEDLLNKFHAILIAISSNHYINSEKFRSFCETTFLLYLRSYPWYPMSP
FT                 TIHKILVHGYQINNSSLVPLGCLGENASEARNKIYKKDRLSHSRKNSRLNT
FT                 MRDIFHRAIDSSDPLLSSVSLREREKKIKRNLSQKRY"
XX
SQ   Sequence 2472 BP; 878 A; 414 C; 407 G; 773 T; 0 other;
     gcactatggt ccagaacccg ttttttttgg cataaagtcg atttttttat gtcaatatat        60
     cgttgttttc ttgtttttat cttaaagtaa attcttcata cattataaaa atgttaatta       120
     aaagctttaa atgtgccacc aaagcttatt gtgagctttt aaaagtgcga ttgcgatcag       180
     ctgatttccg aatagaaatt cgcgccaaaa tatttacttg ctttgagtgg tgtcacacgg       240
     tttaatttag tccgaaaaat taaactaaaa tatggaaaat aatcctcaag gtatgcacta       300
     tttaatgtat attgttattt tatgtgtagt tctacgtatt tagtgttgtg taatgtccaa       360
     tttatgtgta tgtttttaga aaactaacat gcgttctccg tgtttcgtgg aatataacta       420
     atgagctgct ccatgctgac agcaactaat tggtccagaa tgtacttgtg agtgttgtct       480
     ttagccacaa accaaaaact catccccgtt cgtccccctt ttttcgcatt ttggtaattt       540
     ataggcacgt ttgagtttac tcacagcgaa ctttttgaaa tatggcgcag cggcaatcgc       600
     aaaaatcaat gtgtatctga ttggatatac acaaaaatta ataaaaaaaa ttagtaattt       660
     taatagttat attcataaac ggcttcccaa atataactac atgcttgaac ggttcatgtc       720
     taagcatact gtatggttgg aatcaaaaat atcaattact attgatgaat cctgcaaaac       780
     accacagcag atgggacgtc caaccttatc ttacacgaat gcgggtacgg aaacaagaat       840
     tgttctaaaa gaaaatatac tgaatcagaa aacaatttga tgtgcaaaaa cccattccac       900
     ttacacccga tgaattggca tactcctgga tattctctta caaaacagca gtactgaacc       960
     tagattatca ataaaagtcg ccatagtgac atttactata gtctaataat ggaatctaaa      1020
     ttcaatgccg tcctgagata taaaattaag aaactgcccc caagtatcat tcaaaaccaa      1080
     ttattaaatg caagccgatt ttagccagtt tcaaacagct ctgaaattaa actaaatgca      1140
     gctatgtttg atggttcaat atacaagcag aagtttgata ccaaaacaac tggtgaacag      1200
     ctttcagatc actccatttt tgtgacttct gttataccca taaaaattat agacgctttt      1260
     gatcacaaca tatggaataa tagaacaccg caatctatac gattttgcag acctttaaaa      1320
     attgaacttg taaaagaaac tacggcacac ataatgatgg aaaagaactt tttagattct      1380
     caaattaata atctcaaacc atctgtttat aaattcaatg aaaatcgtga tataacagta      1440
     aattatgaaa tgcatatgac acttattgat ggcaaagtgc taaacgtttt gactggaact      1500
     acatctactc aatgttgtcc aatctgtggt gtcactccaa caaaaatatt agaaataaaa      1560
     gattttaatt ctaaacattt tgtcccaaag cctggagctt tgcagtttgg cgtaagtcca      1620
     ttgcatgcct ggatccggtt cttagaattt gtcttaaaca tttcatataa aattgaatta      1680
     aagaaatggc atataaaagg tgatgacaag attgaaatga gcaaacggaa aaaatatgtt      1740
     caagaaaagt tttggaacga aatgggtctt cggataagca tgccaaagca gaatggaagc      1800
     ggcaatacca atgatggtaa tacggcaagg agagcttttg ccaatactaa gctactagca      1860
     tctattacca acttcaacga agatctttta aataaatttc acgcaatttt aatcgccatt      1920
     tcttccaatc attatataaa ttcggaaaaa tttcgctcat tttgtgaaac aactttttta      1980
     ttatatttgc gaagctaccc ttggtatccg atgtcaccaa caattcataa aatattggtt      2040
     catggttacc agattaataa ttcgagctta gttccactag gatgcttagg cgaaaatgct      2100
     tctgaagctc gcaacaaaat atacaaaaaa gatagattgt cgcattcaag gaaaaatagt      2160
     cgtctcaata ctatgagaga tatatttcac agagctatag attcctcgga tccattatta      2220
     tcgagtgtat ctctaaggga aagagagaaa aaaataaaaa gaaacctttc tcaaaagagg      2280
     tattaagtct tttggacctt ccgttcacag cagaaaatga gaatgatctg cagtgcgatt      2340
     ctgacgacga tctggataat tataatattg aattgaatat tgaattggat gaagaagaaa      2400
     attgcattta aaaaataagt aagtaattga atagaacagg aaataatata tatttattct      2460
     taatcagttt gc                                                          2472
//
ID   Transib-3_DBp repbase;    DNA;    INV; 2806 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2806
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 602-602 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           741..2495
FT                 /product="Transib-3_DBp_1p"
FT                 /translation="MLSRFKVQHSAWLSQTIIITIEQQLTDPSPSKMGRPK
FT                 LNNEQAGIRLKRKLANDLSSEIESTDHLLHAAFVSAKRAREDHLLNALKGV
FT                 REQQTGNATGTLKSQTIIPLTPDEALAFLLENGLTKQQYINIHHVNKVRGC
FT                 EIFPPYSSLQQVKTICRPSQIEISESLAQVSMQNILDHTSERLLVMLKDVI
FT                 SQMDDVSYCTLVASYGFDGSTGQSLYKQKFQSEEPASLDLSLFVTTMIPLQ
FT                 LIDANHRIIWNNRAPQSVRFCRPIKIEYAKESHEKILQEKECLYVQVAGLK
FT                 DFIYRKEGKEIVITYKTQMTLIDGKVLNALTGTSSTQCCPICGANPTKLLK
FT                 TTDFLSECFKPRHETLKYGASPLHAWLRFLEFVLNVSYRLKIQKWHIKQAD
FT                 KTEFMSRKKEVREMMWTKMGLHISIPKQNGNGNSNDGNTARRAFSDYGMFS
FT                 TITSFDKNILYNFYVILITISCEHSVDVEKXKVFCENTFLLYINKYPWYPM
FT                 SPTVHXILVHGWQIMNSSLVSVGCLGENASEARNKFYKSDRKSHARKNSRL
FT                 NNMADVFYRAMDSSDPLISSICLSERQNKFKKKIFRQK"
XX
SQ   Sequence 2806 BP; 986 A; 466 C; 504 G; 847 T; 3 other;
     tgcactatgg acaaaaagtc agaaatttgt gcataaagtt aaasttgtta tatttttaat        60
     atacaaaata taatgaattt tccaattaag catactttgg ataaaataaa actgtttcca       120
     aaaaattttt aaacgctgcg atttgaattt cccgcgcaaa caaagtcagc tgatcgattg       180
     ctagcttgat ttctcaaaat ggaaccgtga aaatttgtaa acattgcatt tatgttgtgg       240
     ctttgtcgta aaagtaaaaa cattttgtaa atatggaaaa taatcgtaca ggtatgtaga       300
     ttaaactttg cgcggtagtt tatagatgtt atatgtgttt tgttgtgtct gttcaattgt       360
     tgttggtgta tttttataac taaaatttaa caattgtagc tgtgttctgt ggagtgtaac       420
     ttttttaccg cgcgctcctg cgagcaacta aaactggtat gttcttctta aaaatatata       480
     gattaaggcg ttaataattt cctttgcccg tttttgcccc ttttcgaaaa aaatgacatg       540
     ttgcagccga atatgagttt cgccgtttaa cattgctgga gatttgggag agcaatggac       600
     gcgacgcctc tgccctaaag aagtggattt tagaaaaatg taatgtggat gatgtcacca       660
     agtcacagga taacgaaatc gaggaaaaaa cgaacacatt catatcacac atcaaaaaat       720
     atttgcctaa atgcaaccga atgttgtcta gatttaaggt tcagcactca gcatggcttt       780
     cgcagacaat tattataacc attgagcaac agcttacgga tccatctcct tctaaaatgg       840
     gaaggccaaa actaaataat gaacaggctg gaatacgttt gaaacgaaaa ttagcaaacg       900
     atctttcatc agaaatagaa tcaacagatc acttattaca tgcggctttt gtttcagcga       960
     agagggctag agaggatcat ttgcttaatg cattaaaagg tgtcagagaa caacagacag      1020
     gcaacgcgac tggaactttg aaatctcaga cgattattcc acttacccct gatgaagcat      1080
     tggcattttt gttggaaaat ggacttacta aacagcagta tatcaacatt catcatgtaa      1140
     ataaagttcg cggctgcgaa attttccccc catattcatc acttcaacaa gtcaaaacaa      1200
     tttgcagacc atctcaaata gaaatttcgg aaagtcttgc ccaagtttca atgcaaaata      1260
     ttttggacca tacatcagaa agattattgg ttatgcttaa agatgttata tctcaaatgg      1320
     atgacgtatc atattgcact ttagtagcaa gctacggatt cgatggatct acaggtcaaa      1380
     gtttatataa gcagaagttt caatcagaag agcctgcttc cctagatcta tccctatttg      1440
     tgaccacaat gatacctcta cagctaattg atgcaaatca tagaattatt tggaataaca      1500
     gagcaccaca atctgtaaga ttctgcaggc caattaaaat tgagtatgca aaggaaagcc      1560
     atgaaaaaat tctacaagaa aaagaatgtt tgtatgtgca agtcgctggt ctaaaggatt      1620
     ttatatatag aaaggaaggc aaggaaattg tcattacata taaaactcaa atgacgctta      1680
     ttgatggtaa agtacttaac gctttaactg gtacgtcatc aactcagtgc tgtccaatat      1740
     gtggtgccaa tcccacaaag ctcctaaaaa ccaccgattt cctttccgaa tgttttaagc      1800
     caagacatga gactctaaaa tatggtgcaa gcccattgca tgcctggctt cgatttttag      1860
     aattcgtgtt gaacgtatcc tataggctta aaattcaaaa gtggcacatt aaacaggctg      1920
     acaaaaccga atttatgtct cggaaaaaag aagttcgtga aatgatgtgg acaaaaatgg      1980
     gtctacatat aagcattccc aaacaaaatg gaaatgggaa tagtaatgat ggaaatacag      2040
     ctagaagagc attttcggat tatggaatgt tttcaacaat tacaagcttt gataagaata      2100
     tcttatacaa tttctacgta attttgataa caatttcatg cgagcattct gttgatgttg      2160
     agaaatktaa ggttttttgt gaaaatacat ttctgttata cataaacaaa tatccttggt      2220
     atccaatgtc acccacggtc catmaaatac ttgttcatgg ctggcaaata atgaactcct      2280
     ccttagtttc ggtgggatgt ttaggagaaa atgcttcaga agcaagaaat aagttttata      2340
     aaagcgaccg gaaatctcat gctcgaaaga atagccgatt aaacaacatg gcagatgttt      2400
     tttatagagc tatggattcg tctgacccat taatatccag catatgttta agcgaaaggc      2460
     aaaataaatt taaaaaaaaa atcttccgcc agaagtaaaa aatcttctaa aacctccttc      2520
     tgttccaaac tgcaaaataa tttctcaaat ggaaaatgtg gatttggact ctagcaacga      2580
     atctgatgat aatttatata taatactaga tgaagaagaa caagagacat atctataaat      2640
     aaaattttac aacataacct taaaaatctt tggtttttta ttggttgtgg gagtagaggt      2700
     tgaaggcgtg gcttaattaa aaaaataaaa aaatccgaaa ttctacatta ccattttaca      2760
     ttcttatgcc aaatttgaag catctagctt taaaattaga ctttat                     2806
//
ID   Transib-3_DEl repbase;    DNA;    INV; 2935 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.08, Created)
DT   25-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2935
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4037-4037 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           459..2603
FT                 /product="Transib-3_DEl_1p"
FT                 /translation="MLSLTYIFFDYTNFFCPFLPDSMKYCFLTDNIDLSYA
FT                 EMVEVWLANGRENKSIYDFVLQHIIKTLKEHIKNSIDKKIANFVAALKTRL
FT                 NNCNRDVSRLKKKHENWLALRFKIKLLPSDFMEEAPKNAGRPRLNYDAGSC
FT                 RLKQRLAADLSSKNNNDVNLLAHAANLAAKKARLTVEEVSSKAEPVPFTPE
FT                 EALDFLIENGFTKKQYMSIRXQSKCRNCDIYPSYKKIIAAKDKCRPKGINI
FT                 TESVASVSLQNMLNHTVERILQLQKDIFDVYPNICNMKLIASYGFDGSTGQ
FT                 SLYKQYFEDCIPDTFDQSLFVTTIIPLKLIDSTGQVIWMNRSPQSVRFCRP
FT                 LKIEFIKETKDHIKKEKANLDLEIQNLLPFVFENERDKKYIIHFEPKMTLI
FT                 DGKVLNILTNTNSTQSCPICGATPTQFLTITDLQSEKFMPKSSEALEHGVS
FT                 PLHAWIRFFEFALKVSYRIGLNKWQVRGPQDKEQMTIRKSEIQRKLWEELG
FT                 LHVDKPKANGSGSTNDGNTARRAFCNTDKFAKILGFDLEVLRNFYYILITI
FT                 SSQFEINVLKFKSFCENAAFLYMKKYPWYPMSATVHKILVHGSQIVAASPL
FT                 PLGCLGENASEARNKIYKNDRRSHARQNSRLNTMTDVFCRALDSSDPFVSS
FT                 IYINDRLLANKKYNSYPIEVIHLLRQPNVNFLNNNINTDDAHDDGDDLDTT
FT                 EFTNDYSFDLDVEND"
XX
SQ   Sequence 2935 BP; 1027 A; 481 C; 512 G; 910 T; 5 other;
     cacactggtc ccaaagtcca aaatttgtgc aagaatccaa tttttttttt taagagttgg        60
     gcaaaaacaa tattttattg cgatagagta atattcaggg caattgaaaa taatagaktt       120
     tcaattgaaa ttgcatccct gcgatcgctg gcagccctgg aaatcagctg atcgtttasc       180
     gcaaactttg gcattgcttt ctcgtgaaat taatgcaaag tttgaaaaca aattgtgtaa       240
     aatctaatat ctcgattgca ataattcaaa atggatgata attgtgcagg tatgtgaaat       300
     attatgtaat wttgcaatat ttgttatatg tgtaatttct ttattaatat gtgtttttgt       360
     gatgttatgt gttttagcaa ttctaaccta acttttgtcg tgttccgtgg aataaaggta       420
     tatagtattt aatcgtattt aagaaactat tgatacagat gttatcttta acatatatat       480
     tttttgatta cactaatttt ttttgcccgt ttttgcccga ttccatgaaa tattgttttt       540
     tgacagacaa catcgatttg agctatgctg aaatggtaga ggtttggctg gcaaatggtc       600
     gtgaaaataa aagtatttat gattttgtgc tgcagcatat tattaaaaca ttaaaggaac       660
     atataaagaa ctcaatagac aagaaaatag caaactttgt tgctgcatta aaaacacggt       720
     taaacaattg taaccgggat gtttcaagac ttaagaagaa gcatgaaaat tggctcgcat       780
     tacgtttcaa aatcaaatta ttaccatctg attttatgga agaggccccc aaaaatgcag       840
     gacgcccacg actaaactat gatgcaggaa gttgccgatt aaagcaaaga ttagctgccg       900
     atctttcatc taaaaataat aacgacgtta atcttcttgc tcatgcagca aacttggctg       960
     caaaaaaggc gcgattgacc gttgaggaag tatcttccaa agcagagcct gtacctttca      1020
     ctccagaaga agccttagac tttttaattg aaaacggctt tacaaaaaaa cagtatatga      1080
     gcataaggcw gcaaagtaaa tgcaggaatt gcgacattta tccgagctac aaaaaaatta      1140
     tcgctgcaaa agataagtgc aggcctaaag gaataaatat tacggagtct gtcgcttctg      1200
     tttcactaca aaacatgctt aatcacactg tcgaacgtat attacaatta caaaaagaca      1260
     tatttgacgt ttatccaaat atttgtaata tgaaattaat tgccagttat ggatttgacg      1320
     gctcaactgg ccaaagtttg tacaaacaat attttgaaga ttgcatacca gatacatttg      1380
     atcagtcttt gtttgtaaca acaataatcc cactaaaatt gattgattcg acaggtcaag      1440
     ttatttggat gaaccgaagt ccgcagtctg ttcgattttg taggcccctc aaaattgaat      1500
     ttattaaaga aaccaaggac catatcaaaa aagaaaaggc aaatttggac ttggaaattc      1560
     aaaacttgct gccatttgtt tttgaaaatg aaagagacaa aaaatatatc atacactttg      1620
     agccaaaaat gacattaatt gatggaaaag tcctaaatat tttaacaaat acaaattcaa      1680
     cgcagtcttg tccaatttgt ggagcgactc ccacacaatt tttgacaatc accgatcttc      1740
     aatcggaaaa attcatgccg aaaagctccg aagcactaga acatggagta agtcctctac      1800
     acgcgtggat tcgttttttt gaatttgctt taaaagtttc ctatagaatt ggtcttaata      1860
     aatggcaagt acgcggccca caagataaag aacaaatgac tattcgaaaa agcgaaattc      1920
     aacgaaaatt atgggaggaa cttggacttc atgtcgataa acctaaggca aatggaagcg      1980
     gcagtactaa tgacgggaat accgctagga gagcgttttg caatacagat aaatttgcga      2040
     aaatacttgg ctttgacctg gaagttttga gaaactttta ttacatttta ataactattt      2100
     caagccaatt tgaaattaat gttttaaaat ttaaaagttt ctgtgaaaat gctgcttttt      2160
     tatacatgaa aaaatatccc tggtacccaa tgtcagctac ggtacataaa atattagtac      2220
     atgggtctca gatcgtagcc gcatcccccc tacctcttgg ctgtctaggt gagaacgcat      2280
     ctgaggctcg aaacaagatt tataaaaatg atcgacgttc gcatgcaagg caaaatagtc      2340
     gactgaatac catgacagat gttttttgta gagcactcga ttcgtcggat ccatttgttt      2400
     ccagcattta catcaacgat agactacttg ccaacaaaaa atataacagt tatccaatag      2460
     aggttattca cctgttaaga caaccaaatg tcaatttctt aaataataat attaatacag      2520
     atgatgcaca tgatgatgga gatgacttgg acacaactga atttactaat gactattctt      2580
     ttgatttaga tgtagaaaat gattaattta ataaatatat gtgataaaaa aaataaataa      2640
     aattagccga aaactttcct cattttctat tttagttatt ttttcattta aaatatttat      2700
     tttctgataa gaaactaaaa tctaagccat gtaaaactga aagcaatatc aattgacaaa      2760
     cggacgtata agtaattttg ttgtttataa ggggaggtaa ggaaggcgtg gcccgatcgc      2820
     aaacaatttt tgcacaggct ttttatatcc aacaaccatt aactgtacca agtttcaagc      2880
     gtatatctcs atttttctaa ttactgcaca aatttcggac tttgggacca gtgtg           2935
//
ID   Transib-3_DF repbase;    DNA;    INV; 1029 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1029
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 801-801 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 20-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1029 BP; 327 A; 169 C; 180 G; 352 T; 1 other;
     gcacagtggt ccagcccgta ggccaaaaat aaaaaaccaa agtccaaatt ttaactttaa        60
     atttaccaat tcttatttat aattggtcta gctatttgaa ttaattcatc tttttgtttt       120
     gcaccgtctg tccgcttcaa gaatagcatc gaaagagata gcatgatatt cattgtgtac       180
     tgcagcgtaa gcaacgtgca agtgaagctc tccgcaaaaa acttgttaaa catttttaaa       240
     acaagtgttt gtgccatgga agtgattaat attttaaaga aaggtattaa ctttcttttt       300
     acaataaaaa gtatatgtag tatttgttgt gtgttgtgta aatcattgtt gtatttagta       360
     cataattgtg aacgttctta gtttgtcttt tctgtgtttg gttagagttt tagttgtgat       420
     ggcactcttt ggcattcaca aatctttttg tataatattc ttaagcattt taagaatata       480
     agaaagttta gttcaagtgc cgtaaggtgc cgtgcggctt gcaaaataca aaaaggtaac       540
     ctagcctaaa gcaggcggaa gcggaaattc taacgatggc aatactgcca gggcattttt       600
     taataatcct gatatgtctg ctattataac aggtgttgaa gagaacttaa taataagatg       660
     ctcaacaatt ttgcaagcga tttcatcagg ctacaatata aattctgcaa aattcggaga       720
     gtgtgcatta gaaacagcaa aactacttat cattaaatat ccgtggtact accttcctgc       780
     atcggttcat aaagtattat tacatggttc tgccataatt aaaaattgtt twgtctcaat       840
     ttttcatata aaaactgaat atcagaccga ttgttcatat ggcagctata tgatatagtt       900
     gcccgatctg gctgattttt acatattatt ttaggataaa tataaaaaaa ttttctgcaa       960
     agtttcaagt ccctacctca actagaagta tttttggccg ctctccccat acaagccgga      1020
     ccactgtgc                                                              1029
//
ID   Transib-3_DK repbase;    DNA;    INV; 1189 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1189
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1219-1219 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 39-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1189 BP; 412 A; 178 C; 200 G; 399 T; 0 other;
     tgcacattgg gatgaaatgc ctttattttg gccaaaacct aaaaaattcg tgttaatata        60
     tcaatattgt tacaattatt ttaagctaag aaatgtccct agacatcaaa aatatttaat       120
     tggtatttta ttgtccagcc gttgtcttcc accagccctt gaaagtcaac tgttcttgcc       180
     acgtagtgcg tgcaagtttg ctgattagac aagttcctta actttgacgt tctcgtattc       240
     ttaaacagtt tgaccaatta aaatacctta aaatggaaaa tgtttcacat tgtatgtaga       300
     aaatatctgt ataagtgttt aattatttgt gcttttgttt tgtcatgctt ttaatgaaat       360
     acgtaaacac tagttttgtt gattctaacc ttaaaatatt tgtgtttcgt ggagcatatc       420
     tagcaagata caacaggatt caaataacag cttatgtggt agtatgtgtt attatgtgta       480
     tattcagata gcaattaaat aatttgcggg aacttgcggg ggggtttgat atttcaacag       540
     atgcgagcca ggttggaatt cgtcgaggtg acttacagga agtttggctg tataataatc       600
     gcaatgtcat cgcgactttt tgatttgcat gcgaggaaaa atagccgagt gaacaattta       660
     actgacgtat ttcatcgagc tttggattct tctgatcctt acttatcaag catcgctcaa       720
     aaaaagagtt caaaatcaca ctcattgcca agtgaagtta ttgcactttt agcttctcca       780
     aatccagaag atgcagccca agtatataat attaaagaca accttacaag tataccatat       840
     ttagattttg atttagaaga agaacgttta tattaataca agtttatgta cttattttta       900
     agttttcgtt tatcaaatta agttataata tgcaaaaata ttaaaataaa aaattttcta       960
     acaattatgg ataaaaaaat gcaacaaaaa aaatataaca acattaatat gaattttata      1020
     tgaatatact gcagttctat tatgagggcg gcagggaagg aaaggtggca gtgtaaaaaa      1080
     aaaaaccgaa attcacaaat aatataagca gcaaattctc caagtttcaa ctttctagct      1140
     ttaaaattac ggttgtggcc aaaataaaag catttcatcc caatgtgca                  1189
//
ID   Transib-3_DMel repbase;    DNA;    INV; 2806 BP.
XX
AC   .
XX
DT   08-AUG-2018 (Rel. 25.03, Created)
DT   08-AUG-2018 (Rel. 25.03, Last updated, Version 1)
XX
DE   DNA transposons from fruit fly, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DMel.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2806
RA   Bao W.;
RT   "DNA transposons from fruit fly.";
RL   Repbase Reports 20(3), 585-585 (2020).
XX
DR   [1] (Consensus)
XX
CC   Conceptually constructed.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(691..2163,2144..2611)
FT                 /product="Transib-3_DMel_1p"
FT                 /translation="MFSVNLLRNWRKCNRKINEFSKVYSKWLEKHLVLKVK
FT                 EKIKKERKLAGRPKTLYYLKSLSARRQQADELVRAQNHNERLLLQAAMLAA
FT                 RKRGLLDLAAILKILFLNPAKAKTIRKLIVKPVELPVRSSSDEALALILDQ
FT                 GFTKEQYCAIRDEARYRKAEIYPTYKEVAERKKVCRPANINITDTVAKVAL
FT                 QDLLDLTIARIVACQKDVIEAVMQRQQSDFLSAELVLSHGFDGSTGQANYN
FT                 QSFTNSQSYNADSSLFATTVMPLRLIDSSNNILWNNRTPQSIRFCRPLKLE
FT                 FLKETNDVIIRENLHIQEQIKNLIPSKVILNNNQCIYVRFSLYLTVIDGKV
FT                 LNALTNTKSSQACPICNATPRDFLENRNFRCLKFLPVQGNLKYGLSPLHCW
FT                 IRFLEFVLNMGYKTVVKKWRIVDEIDKNIVLERKKCIQRMFWEKLSLKVDQ
FT                 PKQGGFGSSNVGNTARRAFNNYKAFSEITGVDIQLIFNMRTITYKPGQLPI
FT                 NLEKYEQLCHTTGQIIVDKYPWLPMTATVHKILVHSKEILEQTVLPVGYFG
FT                 EEAAESRNKVYKSDRLHHARKHNRICSFADVFHRAMDTSDPIISSINLRRR
FT                 VRKRKRLSLLPEVIQLLACEFEPDNDSADCADCEEEDDCEILYSIKIEN"
XX
SQ   Sequence 2806 BP; 961 A; 477 C; 535 G; 833 T; 0 other;
     cactatgggg catttggcct gtttttttta caaaaatgtg tttttcacaa gtatgcaaat        60
     ttgctgtatt ttagtattag tatattggaa atactttaaa ctgttatgtt acagcccgca       120
     aaagttaatt taacagcgca tcattataat aacagctgtt aaagtcagct gttgcgagca       180
     cattttagct tacacaaaat ttagcttaac tttcaaagtg ttagaactta aaaagaagat       240
     cgcaaaagaa taaaatttga aatggataat caatctacag gtttgtatta tgtgtttctg       300
     ttaatatatt gtttattgtg tgcgtctact actaacaatt tgtacattta gcaagtggtg       360
     tccacatgta gctgtttgaa aaaaatttca actttgaaga gagctacaac aatttgttca       420
     aatttgttca gtaagtgttt atatccatgt tgtagtgtgt tcaattccta attcatatca       480
     tgtagtctct atgtgcgttt tttgcggttt tttgagaaat ttcatttttt aggaagcaat       540
     atctcgattg ccaatgctgc cctgctggaa gtgtggcgca agcaaaaggg tgttcgtcaa       600
     aaggaaaatg ctatttacac ttttatcagt ggtcattttt ctgatagcaa gatagacttt       660
     aatgaacgat acctaaagga aaaggcgaga atgttttcag taaacctttt gcgaaattgg       720
     agaaaatgca atagaaaaat aaatgaattt tcgaaagttt attctaagtg gttagaaaaa       780
     cacctagtcc tgaaggtaaa agaaaaaatt aaaaaggaaa ggaaattagc tggacgcccg       840
     aaaacgttat attatttaaa aagtttgagt gcccgaagac agcaagcaga tgaactcgta       900
     agggcgcaga atcacaacga acgtcttttg cttcaagctg caatgctagc cgcacggaag       960
     cgcggcctgc tggatcttgc agccatactt aaaattcttt ttttaaaccc agccaaggca      1020
     aaaaccatta gaaaattaat agtaaagccc gttgaactgc ctgtgcgctc ttcaagcgat      1080
     gaagctttgg ctttaattct cgatcaaggc tttacaaagg aacaatattg cgctattcga      1140
     gacgaagcaa ggtatagaaa ggctgaaatt tatccaacct ataaagaagt tgcggaacgg      1200
     aaaaaggttt gccgaccagc caatatcaat atcactgaca ccgtggcaaa agttgctctg      1260
     caagaccttt tagatcttac aatagcgaga atagtggctt gtcaaaaaga tgttattgaa      1320
     gcggtaatgc aaagacagca atccgacttt ttatcagccg aattagtact aagccatggc      1380
     tttgacggta gtacaggaca agcaaactac aaccagtcat tcactaatag ccagtcgtat      1440
     aatgcagatt catcactctt cgctacaaca gttatgccgc ttcgcctaat tgattcttca      1500
     aacaatattc tatggaataa tcgtactccg cagagtatac gattttgtcg acccttaaaa      1560
     ctcgagttcc ttaaagaaac gaacgatgtt attatcagag agaatttgca tatacaagag      1620
     caaatcaaaa atttaatacc tagcaaagtt atcctcaata ataaccaatg catttatgta      1680
     agatttagtc tttacttaac tgttattgat ggcaaagtgc ttaacgcctt aacaaatacg      1740
     aaatcgtccc aagcttgtcc aatttgtaat gccacaccta gagattttct tgaaaacaga      1800
     aactttaggt gtcttaagtt tcttcctgtt caaggaaatt taaaatatgg attaagtccc      1860
     cttcattgtt ggattagatt tttggagttt gtactaaata tggggtacaa aactgtagta      1920
     aaaaagtgga gaatcgtgga tgaaattgat aagaatatag tgttagagcg aaaaaaatgc      1980
     atccagcgaa tgttttggga aaaactatcg cttaaggttg atcaaccaaa acaaggcgga      2040
     ttcggtagtt ctaatgttgg caatacggca cgtcgtgcat ttaataacta taaggcattt      2100
     tccgaaataa caggcgttga cattcagctc atttttaata tgaggacaat tacctataaa      2160
     ccttgaaaaa tatgagcaac tttgtcatac aacaggacaa attattgttg acaaatatcc      2220
     atggcttccc atgacagcga cagtccacaa aatattggtt cactccaaag aaatcttgga      2280
     gcaaacagtt cttccagtcg ggtattttgg agaagaggca gcagaatcga ggaataaagt      2340
     ttacaagtca gacagacttc accatgcaag gaagcataat cgtatttgta gcttcgcaga      2400
     tgtgtttcac agagcaatgg atacttcgga tcctataata tcatcaatta atttaaggag      2460
     gcgcgttcga aaacgtaagc gactatctct tctaccagaa gtcattcaat tgttagcttg      2520
     cgaatttgaa cctgataacg attctgcaga ctgtgctgat tgtgaagagg aagacgactg      2580
     tgaaatttta tatagtatta aaattgaaaa ttaactttag aaacttttaa cttttaattt      2640
     aaaaaaaaaa aaaaaaaaaa aattgggcgg agttgggggc acgcccactt ttccaaaata      2700
     ttcctggggg catgtgtaac ccactaaaaa aaaatcatcc aaatatctcc cgtagtttag      2760
     gagttattaa tttttgtaaa aaaaacaggc caaatgcccc atagtg                     2806
//
ID   Transib-3_DMo repbase;    DNA;    INV; 1831 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   26-FEB-2020 (Rel. 25.09, Last updated, Version 1)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-1831
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
DR   [1] (Consensus)
XX
SQ   Sequence 1831 BP; 644 A; 293 C; 326 G; 568 T; 0 other;
     atgcactatg gtcaaaaagt ctgatatttt ggcataaagt catttttttt atgtattcat        60
     aactgaaaat ttaacttatt tcttgattat agacacatta gataagaaaa aaacgttttt       120
     aaaaaatttt tcaaattagt catttaaatt taacgcgcaa ctaaagtcag ctgtttcaat       180
     gcaagcttaa attatcggta tgcaacgtta aaatttatta agctttgtca ttgttttgag       240
     cgtgattgtt taaagaaaaa gaatatttta atcatggaaa gtaaaagcac atgtatttaa       300
     aattaatgtt cagtgttagt ttgtcaagat tgtgaatgtt tagctgtgta tgtgcaattg       360
     ttgttggtgt ctttttacag gtgaaattta acaaacagag ccgtgtttcg tggtgtatta       420
     cttgttctga gcgcgcttga gcgcgcaact aaaaacgaca tgttcaagat taatgtttat       480
     atattcggaa ttaataagtt tcctctgccc ctttttgttc ctttttgaat aaattgacat       540
     gttgcagcca aatatgagtt tcggcgctta acgttgctgg aagtttggga caacaacaag       600
     cgcgatgata gtgcacttat catatgggta atgggaaaag taaagaaatc tgatctcagt       660
     gctgctcagg tggatatatt tactgaaaaa atcaggattt ttctgaatca cgtcaaaaaa       720
     tatttgccgc agtgcaatcg aatgttgcaa agatttaagg caacagagct tctggaaacc       780
     acagattttt attcaggaaa ctttgcacca agacctgaaa gtcttcaata cggcgcgagt       840
     ccattgcatg cctggattcg tttttttgaa ttcgtcctaa atgtgtcata taggctcgaa       900
     attcgaaagt ggcatattaa gcaggctgac aaaatggaag taatgtctcg aaaaaagaat       960
     attcaagaca tgatgtggaa acaaatgggt ctccatataa acatgcccaa gcaaaacggt      1020
     agtggcaata gtaatgacgg aaacacagcc agaagagcct tctctaatac ccttttgttt      1080
     tcatcagtaa caaactttga tcaagccctt ctacacaatt tctttatttc gttattttga      1140
     ttaccatttc gtctcactat tctgtagatg ttgacaaatt taaggaattt tgtaagagca      1200
     cattttcaat gtacttaagt atatatcctt ggtacccaat gtctccgact gtccacaaaa      1260
     tattagtaca cagctggcaa attatgaact catccttagt tccggttgga tgtttaggtg      1320
     aaaatgcttc agaagctcgg aacaaatatt acaaaagtga cagaaaatca catgcaagaa      1380
     aaaatagccg actaaacacc atggctgatg tgttttatag agcaatggat tcatcagatc      1440
     cgcttaataa aaagaatatg tctgaataaa agacaaaatc gaattaaaaa gaaaaatctt      1500
     ccacaagatg tcatatatct tctaaaggca gtatctccgc cgacccagaa aactattaat      1560
     tccgatccgg aaaattcaga ttcggattct aatttagatc acgaatctga ctgactgaca      1620
     acgaggaaga ataaaaaaat gtattaaaaa aaaaaaattt ttaataaaat tttttaatgt      1680
     actagggcag gtgggtgaag acatgggcca attaaaaaaa aaaaaatccg aaattctata      1740
     aaaatttagc aaaaatatgt accaaatttc aaggctctaa cattaaaatt ggactttatg      1800
     ccaaaaaatc cgactttctg accatagtgc a                                     1831
//
ID   Transib-3_DRh repbase;    DNA;    INV; 1489 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1489
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1420-1420 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs. ~45-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1489 BP; 497 A; 254 C; 259 G; 479 T; 0 other;
     cacattgggc cagcgagccg atttttcgac gaaaattcca atttttcata gcaagtaaac        60
     atattttaat aataaaattt gaatagtata tactttgact aaaatgaatc aaaatatttt       120
     aattgtttta atgcatccct gaaattttgg cagcccttca aagtcagttg tctgattgca       180
     tgcgtgcaaa actaaaaagc gcgggaaaga ttttgtttac ttgcgagcgt gccaacattg       240
     ttgtggttta agcaattttc actaaaatta tggaaacgaa agacaaaggt atgtagaata       300
     tttgtattaa aaaagacttt gttcatgttt gataatgtgt tctttgtgtg cgtttatttg       360
     tgttgtccaa gagtagaaaa aagctaacct gctaacccgt ctgttgtgga ttataacaaa       420
     ttttgtgcca acttgtgcca aaaagtaact atctgtcatt aaagtgcaaa gtgtatataa       480
     actaatttta ttaagctttt ttgctccatt ttgcaccgat atgtataaat cccacatatt       540
     gtagctgcat tgcagcaagg agggcgattg cacaacctaa gctactagct aaattcttag       600
     gtcttgatga atttctcatt gcatattttg acaatatttt aatttcaatt tcttgccacc       660
     taccaattga tccaacaaaa ttttaaaaat attgtcagaa aaccatatca ctatatatgt       720
     ccttgtatcc atggtttcca atgtcagcaa cagtcggcat aaagtgttaa tgcacggata       780
     ccaatagtag aagcatcaat ccttccatta ggtgttctcg gcgagaacgc ctcagaggct       840
     cgctacaaat actataagag tgacaggagg ttacatgctc gatagagtac acggcagaac       900
     aacatggcag acgttttcca cagagcaatg gattcctcag atcctcttgt gtcaagcatc       960
     tatttaacaa aaagattggg tcaccaaaat aaactacccc taccagcaga cgtaatcgaa      1020
     cttttggaat caccttgcta tattcttgta acatgaacaa taataacaat gttcccgatt      1080
     ttgatgctag caataatgat agtgattcaa attctgactt tgaaaatccg ttttcaatag      1140
     aaattgatgt agaagacgac tgttaggaac atttttaaat gtaaaatacc catttatagt      1200
     cattttgaat gcattgttat tttttactta ttaatattaa ggttaagtgt taaaaaaatg      1260
     aattaaaaac atttgttgaa tttaacgagt gctagcaata tttattaccg tacaagtatc      1320
     aataagagaa aacctatctc atatgggcgg ctagggaagg cgtggtcaga tcagtctgaa      1380
     acttagatat attaatatgt gcatcgacac tatcatatgc accaaatttg aagaagctag      1440
     ctttaaaact ttaattttcg tcgaaaaatc ggctcgctgg cccaatgtg                  1489
//
ID   Transib-3_DSuz repbase;    DNA;    INV; 2980 BP.
XX
AC   .
XX
DT   16-JUN-2021 (Rel. 27.01, Created)
DT   16-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2980
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 87-87 (2022).
XX
DR   [1] (Consensus)
XX
CC   91% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 2980 BP; 991 A; 491 C; 534 G; 890 T; 74 other;
     cacagtggtt ccgtcagagk ccaaaaatca aagaaaccga tcwgaaaata ttkwaactma        60
     atttacgcag cttgtctcta aaatgtccaa wcttccaact tgcaaacwtg ttttcgctgg       120
     aaacccaatc gwaagcatga acacgtgttc atttcaacag cgcatcggag ctstkgtgaa       180
     atatttcgaw gcaaaagcgc acttcaaatc gggctggtaa ctgttcaagt tgwtaaactt       240
     atattawtca aaatggattt tgaagctcaa ggtatttatt ttactktatg aaactaattk       300
     atactmactt gatatkaaaw taataaaawc taacttgata tgtgaagccc mtttgcttgt       360
     wcctkttttg tgtktckcaa atttgtttac ctagttttag ttgtkwtccc acacgattcc       420
     mmacwaggat tttttttatt ttawcagagt cttmagattt ttttttktts cggatgtggs       480
     tgtaatcgtt aatatgctaa cacgacttct tatttttksa aggtcamatt ttgccagcgc       540
     gctgcagcgg agcccctgtg tcgtcctttg tgtctctgtc tttgtgwtck tcttttgtga       600
     ttgcttwcag cttctatttk tcagttwatt wcttttactt aaaattattc taattatttt       660
     tcctttcttt tawaattttt tttkcattcc caaaggagat tcgwatcatt gtgwattgaw       720
     ttgaatttat ggtgcaccaa aggtggtagc aacgctgcka aattwcggga amctatcgag       780
     gatgtkcaaa mkaatatcga gaaaatcgkc tacaatktcg agctmaacga actktttaag       840
     tcgattcatc tcagcatata gcggaaagtg ctagtcgtgg tcgtccaaag gttgattttg       900
     cggagtcttc atctagaaca aagcgtcgtc gtatagctca gctgattaat atcgatgagt       960
     ccactgtttc tgctttgcgc aatgaaaatc agcaacagcc gacaatgcaa gctgatccca      1020
     ctgaagtaat ttccctaata atggagaccg ccatgtccaa aagtcaatat ttgcttataa      1080
     ggaatttcgt taatagcaaa atatccttcg acttatttcc aagctaccaa accatagtaa      1140
     atgcaaaaaa aagagatacc ctaaaaacat atcagtagat gaatctcatg ctgaaattga      1200
     tttgcaagtt tactggataa tacagcatcg agcatattgg agcttcaaga tgatgtagtt      1260
     aaatcaatca cggatgaatc tattgaaaac ctaacgttaa ttggaaagtg gggttttgac      1320
     ggaagtacgg gccatagtga gtacaatcaa agtttttcaa gctacgattc agaggacaag      1380
     agcctatttg tcacatcata cgcacctctc caactaattt caaaaagtag tcatacaata      1440
     atttggaaga atccgcggcc ttcatcgaca cgttactgca ggccagttcg ttttcagttc      1500
     aaaaaggaga caactgaact gtcaatcgaa gaggaaaaat actttaggga gaaaatamat      1560
     caactcaagc cgacgaatkt ttgacttawa ataaaaagat aackgttgag catagtttac      1620
     aactkactat ggtagacgga aaagtgtgca acgctttaag kkagtmatcc tctwcaaaat      1680
     gttatatatg tggagcaawt ccaaaagwga cgaataactt ggmtaaacgt ttaaasaaag      1740
     acgtggacag agaakacgga gcaaaaatta aaagttttag accaaaagca taaaattcaa      1800
     gcggcgtttc gggaaaaaat gggaataata gtggacaagc ccagagacgg aggcagagga      1860
     tcgtcgaacg atggaaatgt ggctagaaaa tttttttcaa atccaaaatt ggcttctgaa      1920
     attacagggc ttaatgaaaa ccttatccat cgttgtgcca ctatactcca agctatcgcc      1980
     tcggggtaca aaataaattt ggacaaattt aatgaatatg ccatcgatac tgctaaggaa      2040
     ttgataaaag agtatccatg gtactatttg ccagctacag tccataaggt gttagttcat      2100
     ggatcttctg taattgagca tgcactcgtg tcaatcggag agctttcgga agaagctgcc      2160
     gagtctaata ataaggaatt aaaaaaatgt agattgtatc acagccgaaa aatgtcacgg      2220
     attgcaacaa acacagacat attgaacaca ctcattttac ggtcggaccc atttataact      2280
     gggcaaagaa aacatggaaa gaaggataaa tcaacgttac ttgaatctgt gttcaactta      2340
     cttgaagaaa cattataaat ctttgttata attatattaa ttcgttaata gctttgaaaa      2400
     tatcaatata ataaattggc ttacaatatg attgtttaat ttatgatttt ttgatatgat      2460
     attattttag taggtgtata gcttgagaat tagacggggg aagatattta aatttatgaa      2520
     atataaacaa aatagttgat ttttcctatg gcagcaaatg taaaactaca ccaaccttat      2580
     agtctgggag tttagataac atacctctaa aaataagaaa aaatttgcat actaatttgg      2640
     acccttttta aaaaaattct tatttgaaaa cgcaaaaaat aattgaaaac ttttttattt      2700
     attgtattac aaaaggttca aagtwaataa aaaaaaattg cctcgatacg agggctgttc      2760
     aaaaagtaat gagacttcaa agtcggtggt ggaaaaaaaa ggtgtcgtca cggcggcgat      2820
     cgttcctata gcagctatat catatagacg tamgatatgg ccatttctta taacatacat      2880
     atatttataa tgtttttttt taattttggg gaaaattttg taacaatata acaactaaaa      2940
     gtaattatgg ccgcagctcc atacaagccg aaccactgtg                            2980
//
ID   Transib-3_DTa repbase;    DNA;    INV; 3515 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.09, Created)
DT   26-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3515
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4697-4697 (2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. 99% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1089..3083
FT                 /product="Transib-3_DTa_1p"
FT                 /translation="MALNNSKLYELFRSTTTYSEFKEAVIEELKQSNENIL
FT                 HTLNLTYASIKLKWTNVSRNAGRFAMKYEDWLNDETILDIPAEEEPTTSTG
FT                 RGRGRPSKSMEDCQERTRKRKLKDATDDLTTENVSEALSLKYKKDNEKVRA
FT                 QIIESVAEASPPRLIRIKESIPTPPNGLIKKYGLEEALALFMDLELSKEKY
FT                 EILRKSLLRHGVDLLPGYKYISKAKESSRPPNTEFTEVSAKTNFQDLMNHT
FT                 AKRILESLPVNEMENLPEKLTLISKWGCDGSSGQSVYKQRISSDDPTVSDG
FT                 NMFMASVVPLRIKSDEFEYWKNPRPSSVHYCRPIMFQFARESPELIKDTVN
FT                 DIKEQIRKIKPVKLEISEGKYVKCYYEFHLTMVDGKVVNELTNTKSTKSCP
FT                 ICKRTQKNFGKDLNDSTDEENYEYGISPLHARIRCMEFLLKLAYIIPNENE
FT                 HFEENTSNKDKESIRKKRIQNDFFKEVGLKVDFPKYGYGNSNDGNTSRRFF
FT                 EQHEVVTRITGINNEIVKRLGTILNVLNCKEKVNSTKYGEYASKTASLLEE
FT                 LYPQKKLTPTVHKILAHGKEIIEYQCLPIGELSEEAQESLNKFYKKYRLLN
FT                 TFKTSRMRENEDLFNMLAASSDPLISSLRHVKSRKELESSNYSPEMLSLLD
FT                 LPSLPNCDHYFKKHEI"
XX
SQ   Sequence 3515 BP; 1261 A; 570 C; 634 G; 1048 T; 2 other;
     cacagtggcg ccttgggcca aaaaacgtgc aataaatcac tttttcgact ttgtcctaga        60
     aagttgtgac ccataccaat cgacaggtaa ttgatccact attacaaata tgtaaccctt       120
     tttcaaatca aaaaattttt gtaaaagata tgaattttca aagttgaaca atttttcact       180
     taaaaaaaac acaccgtttt taggtaattt ttcgcacttc cggggggttt ttcttaaaaa       240
     ctaggtatcg aatcgctttg cttctttttt ccacggattg gtgtgttagt taagagtaaa       300
     aaaagtaaaa catattgcag tttgccatgc gcatctctta gttatgagtt atttgcgaaa       360
     cgtccatttt ttccatattt ttcaactttg atggaaaata aaaaaaaact atttaatact       420
     atttttttta tacttccgta aaacgttatt tggactttct tcttgatatt acgaaagttg       480
     tagctgcgtc cgcctgcgtc cgcggtttta agagccaaaa aagggaaaaa agtcatggtc       540
     caagaaattg catatggcgc taccttgtga aatgaccatc tctattcatg ggaaacgttt       600
     tttatgttat tattgattgt caaatgggga ttttatttta caatttttat atgttttgcc       660
     tggcaattag ttatcaaaaa tattgaaaaa ccgaggcgtt accttcaggt agtatgcaaa       720
     ggtaaattat gcaggtatac atgtacaggt acatatagta gtatgtagaa tcaaaacaac       780
     atataactgt cctctgattt agcaggtgca tacaggtagg cattcattga cagaaaaata       840
     taagcttgca gtctcctaca ggtaggctgg aatttaattt gaacacctgc aaaatactta       900
     aattgcgtaa ttctacctaa ggttggcgtt tcacttttta aggcgtttga taaactcttt       960
     acctgtttgt acctatcagg taatacctca cactatatat tgcattgtag gcttaatccc      1020
     tggattagtc tatgactgaa agttgacgag acacgttctt tgtattctcc ttattttttt      1080
     agttaaaaat ggctttaaac aactcaaaat tatatgaact gtttaggtca acaactacct      1140
     attcggagtt caaagaagct gttatagaag aactaaaaca gagcaacgaa aatatattac      1200
     acactcttaa tctgacatat gcaagcatta aattgaaatg gacgaatgtc agccgcaacg      1260
     cagggaggtt tgcaatgaaa tacgaggact ggctcaatga cgaaactatc ctggatatac      1320
     cggccgagga agagcccacc acatcaacag gtcgtggaag aggaagacca tctaaaagta      1380
     tggaggattg tcaggaacgc acaaggaaaa gaaaactgaa agatgcaact gatgatttaa      1440
     ccacggaaaa tgtttccgaa gcgctttctt taaaatataa aaaggacaat gaaaaagtga      1500
     gagcgcagat tatagaatcg gttgctgagg caagtccgcc tcgacttata aggattaagg      1560
     aaagcattcc cacgcctccg aatggactta ttaagaagta tggcttggaa gaggcattgg      1620
     ctttatttat ggacttagaa ctttcaaaag aaaagtatga gatattacgg aaatctttac      1680
     tgcggcacgg agtcgacctt ttacccggat acaagtatat ttcaaaagca aaggaaagtt      1740
     cacgaccacc caatacggaa tttacggaag tatctgcgaa aaccaatttc caggatctta      1800
     tgaatcacac agcaaaacga attctggaaa gtcttcctgt aaatgagatg gaaaatcttc      1860
     cggaaaaact gacactgatc agtaaatggg gctgcgatgg atcatctgga caaagcgttt      1920
     ataaacaaag gatatcttcc gatgacccta cagtatcgga cggaaatatg tttatggcat      1980
     ccgttgttcc cttgagaatt aaatctgatg agtttgaata ttggaaaaac cctcgtccgt      2040
     catcagtaca ttattgccga ccaattatgt ttcaattcgc aagggaatca ccggaactga      2100
     taaaagacac tgtgaatgac attaaagaac aaattcgcaa gataaagccc gtaaaactgg      2160
     aaattagtga aggaaaatat gttaaatgtt actatgaatt tcacctgacc atggttgacg      2220
     gaaaagtcgt taatgaactg acaaatacta agtcaacgaa gtcatgccca atctgcaaaa      2280
     ggacgcaaaa gaattttgga aaagatttga acgattctac agatgaggaa aattatgaat      2340
     atggaatttc acccttacat gctcggataa ggtgtatgga gttcttgctg aaactagcgt      2400
     atattattcc aaacgaaaat gaacactttg aagaaaacac atcaaataag gataaggaaa      2460
     gcatcagaaa gaagagaata cagaacgatt ttttcaagga agttggatta aaagtagatt      2520
     tccctaaata cggatacgga aactcaaatg atggaaatac ttcgaggaga ttttttgaac      2580
     aacatgaagt tgttactcga atcactggaa ttaacaatga aatagttaaa aggttgggaa      2640
     ccatcttaaa tgttttaaac tgcaaggaaa aggttaactc tacaaaatat ggagaatatg      2700
     cctcaaaaac ggcatcactt ttagaggaat tgtatccaca aaagaaattg accccgacag      2760
     tccataagat attggcgcat ggaaaagaaa taatcgaata ccagtgtttg ccaattggag      2820
     agctttccga agaagcgcag gaatcgctaa acaaatttta taaaaaatac agattgctga      2880
     atacatttaa gacatcaaga atgagggaaa atgaggatct gttcaatatg ttggctgcat      2940
     cttctgatcc tctaatttcc tcattgcggc atgttaagtc aagaaaagag ttagaatcta      3000
     gtaattatag tccagaaatg ttaagtctat tggatttacc aagtttacca aattgtgacc      3060
     attatttcaa aaaacatgaa atataaaaat ttttattttt aaaaaaaaac tttaattttt      3120
     tttttttttt ttttttagtt tttaaaaatt aaaacataaa aaaataaact aaacaaaacg      3180
     taatttaaaa aaaaaaaaaw tttttttttt waaattccaa ttttttattt attttttttt      3240
     aataagtttt aaaaattaca acatgaaaaa agaaactaaa aaaaacaaaa actttttaaa      3300
     aaaagttttt ttttgtcgga aaaaaatgga tttgttttta aattctgact ttgccgattt      3360
     gtaagtacgc ctctgccacg cccactccct gtctcaagca ataatttgaa aggtggatca      3420
     attatctatc atttgccgtt tacaaaattc aattatcttc actggttcaa aagttatgat      3480
     ttattaccaa aaaaaagtca aaaggcgcca ctgtg                                 3515
//
ID   Transib-4_CoFl repbase;    DNA;    INV; 3539 BP.
XX
AC   .
XX
DT   28-OCT-2019 (Rel. 24.11, Created)
DT   28-OCT-2019 (Rel. 24.11, Last updated, Version 2)
XX
DE   DNA transposon from the Copidosoma floridanum genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_CoFl.
XX
OS   Copidosoma floridanum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma.
XX
RN   [1]
RP   1-3539
RA   Kojima K.K.;
RT   "DNA transposons from the Copidosoma floridanum genome.";
RL   Repbase Reports 19(11), 2116-2116 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 34-bp TIRs. The exon-intron
CC   structure is predicted with Softberry FGENESH.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(279..297,850..1380,1518..2965)
FT                 /product="Transib-4_CoFl_1p"
FT                 /note="transposase."
FT                 /translation="MESSVEDDSHSDFLNGLTKTEFFEAVKHNLQADISEV
FT                 YSIVENLMSSKLQSLYILSDAHKSTVRKILSQIKERWNKCKRTESRFLESN
FT                 REWLNGTIKLQATEEQNIKSSTGRPSSSFASFSDRSKRRKTEILRAEVSTE
FT                 ELAYAAQMKLRAEGKTDAAKVVQEVTTGSPTKAKICRESMGISEAAKQKCY
FT                 PNCSMEMSESNVEVAVQPLLHHTAERILQSQIDVLKMLNEDECKNLNLISK
FT                 WGCDGSSGHSTYKQKFSDETLSDESVFFTSIVPVQLQHVNKMTGNTVVIWK
FT                 NPRPSSPRYCRPIKIELVHENTEIIKKTVDNISKQINELVPHDTVIDGKQV
FT                 IVHYETVLCMIDGKVCNAITDTSSAQRCYLCKATSKDFNEIDSILKKPIDE
FT                 KNLNFGLSTLHAWIRCFECCIHIGYKLAINKWQARSAEEKQTVKLRKENIQ
FT                 KGFKTKLGLIVDKPKPGYGSSNDGNTARRFFENSETSATITGVDKDLIHRF
FT                 HVILSALSSGFDINVQKFNQFSLETARKYVALYSWYPMPTTVHKLLIHAPV
FT                 IISHSVLPIGQMSEDAQESCNKLIKQFREHFARKCSRTKTLQDVFLRFLVN
FT                 SDPHLSSCRDLPAKSLKSMSEEVVDLLLPPQVQIDENFLHDEDSSSECSTS
FT                 EDTDITFTCIHNDFLL*"
XX
SQ   Sequence 3539 BP; 1243 A; 553 C; 654 G; 1089 T; 0 other;
     cacagtggga ccaaatccaa aaaagctggc caaaatgaaa aaaaaaaaaa agttactgga        60
     tagggttttt tttttggggg gggggggttg gctctaggac acctctaata gtgaggaatc       120
     agtcgggaaa ggttagattt gtttctacag tctgcaaaat ttgcggttgc tgttgacctt       180
     tgttcgtttg ttgttaaacc ctaatatttc gtcaaaaagg tgtacgtagt caaagcggta       240
     taaaaagttc actaatcaag aaattgcagt cggtccaaat ggaatcatct gtagaaggta       300
     tgtgaagtgt attaaaattt ttctatgtat ttatcaagca agtacatagt gtgtagtaag       360
     catctactat atgtaatttt tatgaatgaa gattgtaaaa atgcgatata ttttggacaa       420
     aaagtaatat tgcacccctt tgcacccctg caaaacttat tgggcgttgc tagtaaagat       480
     ataatctacc acttcgaaaa aaaattctgc ccatagctgc ccttccgtgt tttaacgggt       540
     tttttgtaaa aaaagttcgt aatatcgagt aaataactgc ataaatagtt gattgcaaaa       600
     gtcttttata acgtaatttt atttcaatct aacctacaaa aacgcatata cgtgtgcagc       660
     agtgtgtgtg tgtagtgtat atatatatat atacctataa taatgtacag tgagcagtag       720
     ctgcgcagta ctcttgagcg ggaacccgat tcccgcgaaa tttaaaaata caaaaaaaat       780
     ttatcgcata aattaaaaaa aattacaatt aattttacaa gtataattaa aattataata       840
     atttttcaga cgacagccat tctgattttc ttaatggttt aacaaaaaca gaattttttg       900
     aagctgtcaa gcacaattta caagcagata tatctgaagt gtattcgatt gttgaaaact       960
     tgatgtccag taagctgcaa tcattgtata ttttatcaga cgcccataaa agtactgtta      1020
     gaaaaatttt atctcagatt aaagaaaggt ggaataaatg taaaagaacg gagtcaagat      1080
     tcttggaaag taatagagaa tggttgaatg gaactattaa actacaagca acagaagagc      1140
     aaaatataaa atcaagtaca ggcagacctt cttccagttt tgcatctttc tctgatagaa      1200
     gtaagcgtcg aaaaacagaa atactacggg cagaagttag tacggaggag cttgcttatg      1260
     cggcccaaat gaaattacgt gctgagggaa agacagatgc tgcaaaggtt gtacaagagg      1320
     tcacgacagg aagtccaaca aaagcaaaaa tctgccgtga atccatggga atatctgagg      1380
     gtaaaaatgt atttacaggc gatgaagcac tttctttgat cattgaattg aaattatcta      1440
     aaaaccaata tcttcagctg cgtaatgctt gcttaaaaaa aatgtcaaac tctttccatc      1500
     gtataaaata ataacagctg caaaacaaaa atgctatcca aactgttcta tggaaatgtc      1560
     tgaatcaaac gttgaagtgg cagtccagcc attgctacat catacagctg aacgaatttt      1620
     acaatctcag attgatgttc taaaaatgtt aaatgaggat gaatgcaaga atttaaattt      1680
     aatttctaaa tggggttgtg acgggagttc agggcacagt acatacaaac aaaagttttc      1740
     cgatgaaaca ttatcagatg aaagtgtatt ttttacttca attgttccgg tacaacttca      1800
     acatgtaaat aaaatgaccg gaaataccgt tgttatatgg aaaaatcctc gaccttcttc      1860
     tccgagatat tgtagaccta ttaaaattga attagttcat gaaaatacag aaattattaa      1920
     gaaaacagta gataatatat cgaagcaaat caatgaactc gttcctcatg atactgtcat      1980
     agatggcaag caagtaattg tacactatga aacggtttta tgtatgatag atggtaaagt      2040
     ttgcaacgct ataacagata catcttctgc acagcgttgt tacttatgta aggcaacatc      2100
     taaggacttc aatgagattg attcaatttt gaaaaagcca attgatgaaa aaaatttgaa      2160
     tttcggtttg tcaactttac atgcttggat tagatgtttt gaatgctgta tacatattgg      2220
     ctataaattg gctattaata agtggcaggc tcgcagtgct gaagaaaaac aaacagtgaa      2280
     gctaagaaaa gaaaatattc agaaaggttt caaaacaaag ttgggtttga tagttgataa      2340
     accgaagcct ggatacggaa gttcaaatga tggcaacacc gctagacgtt tttttgaaaa      2400
     tagtgaaact tctgcaacca taactggagt tgataaggat ctgattcatc gatttcacgt      2460
     tatattatca gctttatcat ctggttttga tataaatgtt cagaaattca atcagttttc      2520
     attggaaaca gcgagaaagt acgtagctct ttacagctgg tatcccatgc ctacaacagt      2580
     tcataaatta ttaattcatg ctcctgtaat aatatcgcat tcagtattac caattggtca      2640
     gatgtcagaa gatgcccagg aatcttgcaa taaattgatt aaacaattcc gtgaacattt      2700
     tgcacggaaa tgttctcgaa ctaaaacatt acaagatgta tttttgagat tcttggtaaa      2760
     ctctgacccg cacttgtcta gttgtcgaga tttacctgcg aaatcattaa aatctatgtc      2820
     agaagaagtt gttgatctgc tgttaccacc acaagtacaa attgatgaaa attttctaca      2880
     cgatgaagat tcaagctctg aatgttcgac atcagaagat acagatataa ctttcacttg      2940
     tattcacaat gattttcttc tgtaattctt ggaaaaaaat aataattttt taataattgc      3000
     atttctaaca aatatttttt tacctcccta atgcacagta actgccagac taatggaaaa      3060
     aaattattaa aaatttttct gattttgatt tgccacttat tatttaacaa atataaaaaa      3120
     tattccgaaa tttcaagcca tattcaacag ttttctacaa ttctgatgga ggatttgtaa      3180
     tcagcgacat ctaaaaaccc gagtgaaatg tttaaatatc atttactgaa gtgtttcact      3240
     ccttgaagag gttatgttta ccatattgag tccgccattc tgaaaatcgc gattctgata      3300
     ccagattcgt aatcagcgac cccgaaaacc ttgaaaatga tgtgtgactc aagtacgatg      3360
     tgaaatatgg gatattttat gcaagggggt ggtgaattag gggtgaaggg ggtgaaattt      3420
     aggaggtccg acattaaatt cgtaatcagc gacctcaaaa acccctgagt aagaaatttc      3480
     agatcaatta cttgattttt cgatttttgg ccagcttttt tggatttggt cccactgtg       3539
//
ID   Transib-4_DAn repbase;    DNA;    INV; 2786 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2786
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 280-280 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. This consensus is 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           478..2520
FT                 /product="Transib-4_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MCNINCYYLLAFKLWYFLGTMSVAKRVLFLVWHSEVI
FT                 PTKKFAAMENFVFGTVLKNITFTLEEQSEIGKKLRNFISRLIVKWKDCGRN
FT                 KDFFETKNQEWLDTPLVLMEISXLKNVGRPQKDLADCCKKTQVNKLSDLTE
FT                 DIPSDALLVAASSSLYKAGRRSASKLVSMVNADEELTGNIMKTLTTPQRLP
FT                 TKFSDEKALALFVDVGHTKYTWNLSKRAAKGQNADIYPCYDKLRCAKKKCY
FT                 PSVITVTDHFAEVALQSLVDHTIARIIEAHPESFPTHIENNKDIQLTATYK
FT                 WGCDGSSGHSTYRQKFDDFDGNMIDQYLFSICIVPLTVQKELKVLWKNNRP
FT                 SSTRYCRPIKILCEKESAELIRRESEDIKSQISNILPTLLGGFRIDHQFHM
FT                 TMLDGKTFSVISESSSQTCGICKATPKNMNDLNLVKSLSINENLFEYGLSS
FT                 LHAWIRFFECVLHIAYRIPIQKWQARGVDKDVVDENKRIIQQKLREEMHLL
FT                 VDIPIATXGSTNNGNTARRFFEQPNLAARITGVSYNLIHRFSVVLRTLAXC
FT                 HEINSDAFRSYALETAELFVKSYPWFYMPSSVHRILIHGADIISHFCLPIG
FT                 MMSEEALEARNKDFRNVRESNTRKNCRKNTMEDVLNALLVSSDPLITSLSN
FT                 GSAISSTKKIIMDDDVKRCLLKSNKTSGYASL"
XX
SQ   Sequence 2786 BP; 942 A; 468 C; 532 G; 837 T; 7 other;
     atttggtctc cgctagcggc atttaattca aattttcaaa cttaaaaaac atttaatatt        60
     ttttcacata tcgatagcaa atgctttgat tagattttta aaagcttttt aaaagctcta       120
     cgatcagctg atcatcagct gtgagcggtc aaacacacca tatgattttg caaagagctt       180
     tacacaattt tttctctttg cgcgcgttga atttgagttc ctcggaaatt tacaattttt       240
     agtgaatttg ttaaaagttt ggctttttat tatcttcaag gtatgtatta caaaaaaagt       300
     caatgtttgt gaccggtcta taaatgtgta gctcataaaa cgtagtggta attcagtgta       360
     ttaacaacta kcccggatta gcgtacacct gtctttcgtg gagtagaact taccggattc       420
     aagtggattc agtctaactc ttttattagc cgaaagtgtg aatcagtgcc gtccaaaatg       480
     tgtaatatca actgctatta cctgctagcc ttcaaactat ggtacttttt aggaacaatg       540
     tcagtagcaa aaagggtgct ttttttggta tggcactcag aagtcatccc aacgaagaag       600
     tttgctgcca tggaaaactt tgtatttggt actgttttga aaaacattac atttactctg       660
     gaagagcaga gcgagattgg taaaaaattg cgaaatttta tcagtaggct aatagtaaag       720
     tggaaagact gtggaagaaa taaggatttc ttcgaaacta aaaaccagga atggctagat       780
     acgccgctgg tattaatgga aatttcawgt ttaaaaaatg ttggtcgtcc acaaaaagat       840
     ttggcggatt gttgcaaaaa aacgcaagtc aacaaattgt cagaccttac tgaagatatc       900
     ccatcagatg cattgttggt agctgcaagt agcagcttgt ataaagctgg aagacgcagt       960
     gcttcaaagt tggtttcaat ggtaaacgcc gacgaagagc ttaccggaaa tataatgaaa      1020
     accttgacta ccccacagcg tctaccgaca aaattctccg atgaaaaagc actggcccta      1080
     tttgtagatg ttggacatac caagtacaca tggaatttgt caaaaagagc tgccaaagga      1140
     caaaacgctg atatatatcc atgttatgat aaactgcgtt gtgcgaaaaa aaaatgctat      1200
     cccagtgtca tcacggtcac tgatcatttc gctgaagtag cactacaaag cttagtggac      1260
     catacgattg ctaggattat tgaagcacac ccagaaagtt tcccaaccca tattgaaaac      1320
     aataaagaca tccaattaac tgctacatac aaatggggct gtgatggcag cagcggccat      1380
     tcaacgtaca gacaaaaatt tgatgacttt gatggaaaca tgatagatca atatttattt      1440
     tcaatttgta tagtgccatt gacagtgcag aaagaactga aagttttatg gaaaaacaat      1500
     agaccttcat ctactcgata ttgtcgaccc attaagatac tttgcgagaa agaatcggca      1560
     gagttaattc gtagagaaag tgaagatatt aaaagccaaa tttcaaatat tttaccaaca      1620
     ttattgggtg gctttagaat tgatcaccaa ttccatatga ccatgcttga tggcaaaacg      1680
     ttcagtgtca tatcggaatc ttcttcgcaa acatgcggaa tatgtaaggc aactcctaag      1740
     aatatgaacg atctgaattt ggtgaagagc ttgtctatta atgaaaacct ctttgaatat      1800
     gggttatcaa gtcttcacgc stggattagg tttttcgagt gtgttttgca cattgcatat      1860
     agaattccga ttcaaaagtg gcaagctcgt ggtgttgaca aagatgttgt cgatgaaaat      1920
     aaaagaatta ttcagcagaa gctgagggaa gagatgcatt tgctggtaga tataccaatt      1980
     gctactkctg gtagtacgaa taacggaaac actgcaagga ggtttttcga acaaccaaat      2040
     ttggctgctc gtataacagg agtaagctat aatttaatac atcgattcag tgtagtctta      2100
     cgaacactag catsctgcca cgaaataaat tcggatgcat tcmggtctta cgcattggaa      2160
     actgccgaat tgttcgtaaa atcatatccc tggttttata tgccatcttc tgttcacaga      2220
     attttaattc atggagcaga tattataagc catttttgcc ttccaattgg tatgatgtcc      2280
     gaggaagctc ttgaagccag gaacaaggac ttccgaaatg tacgagagag caatacaagg      2340
     aaaaattgca ggaaaaatac catggaagat gtgttaaatg ccttattagt ttcttccgac      2400
     cccttgataa cgtcattgtc aaatgggtct gcaatttcct ctacaaaaaa aattattatg      2460
     gatgatgatg ttaagagatg tttgctgaaa tctaataaaa catctggata tgcctctctc      2520
     tgatgattcc gatgattccg aataacattc tggccttttt tagataaagt ttatttatga      2580
     aatatgttaa ttgaagttta aataaaataa aagtaaaaca aaattttaaa ttaaaaaaaa      2640
     aaatttttta aattaaaaaa aaaatttttt aacttaaaaa attctatgat ttttttcwga      2700
     tcagtgaaaa aaaaccgact gaaaacatct attttagttt agaagttatt aattaaatgc      2760
     cgctagcggg accaaatcgc ccactg                                           2786
//
ID   Transib-4_DBi repbase;    DNA;    INV; 1464 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-4_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1464
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 745-745 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1464 BP; 530 A; 248 C; 261 G; 423 T; 2 other;
     cacagcggtt gcgtccatag gccaaaaatc aaataatcca tctaaaaata ttaagtcaaa        60
     atgtaagcaa atcagctcta tattgtctaa attgcgcatg ggggcaaatg cagaaaaaac       120
     tacgtgatgt gattggttta gtttagaaag tattgaaaac aaaggctacg cagttgatat       180
     agattatctt gacaattgta ttacttatat ttacaaaaaa agtattgctt attgggcaaa       240
     gtacataaat aatcgaataa aaagttcaat tgttcaatat caatacaatg gctgaacgct       300
     attaaagcat tgcaattgag cctctgaaac aaagtttcaa gtgctgaaag tggacgcgaa       360
     agtgattttg ctgaggacga aacgtcgtcg gacagcgctg cttgaaaaca ttatgagtct       420
     gcagtttttg ttttgcgctc agtcgatttc ccaccgatct tgaagtcatc cgaagctgat       480
     attgaaaagg ttttatcgmt tctaatggac actggaataa cgagacacca atacttgctt       540
     attcgtgaat tcataagtag tgaaacttct tcatgcgtat ttccaagcta tgaaaaaatt       600
     cttaaattta agacttcact tcgcctacta aacaatacag ctattggtat tttacagctc       660
     aaaatactgt gattgaaaat tgtcttgatg ccacggagaa cgctttaata ttaattggaa       720
     aatgggcgtt taatgacagt actgggcaca gtgagtacaa tcaaaagttt tcaaattgta       780
     atagcaatga tagatttctt tttgcaaaat cgtacgtccc acttcagctt attggtgaaa       840
     gtaactccaa aataatatga aaaaattcta ggccatcatc tacatctatt gtaagccagt       900
     acgaattcaa tttaagaacg agaccgccac actatccatt gaagaagaat cgtatattaa       960
     aaataaaata gagaacctaa tgcctaccga attttaaatt tccaataaga aattcataaa      1020
     acatagtctg caacttacta wggtaggtgg taaagtttgc aacgcgttaa gccacacgtc      1080
     gtccatgaaa tgttttatat gcaaagccca ccgaaatcaa taatttaaaa atatatctta      1140
     caaaaaaagt taagaaaaag ttttttgaat tcggcctatc tccacttcat tcctccatac      1200
     gttctttcga gtattttttg cacatttcat acaagttaga aacaaaaatg tggcaagcac      1260
     gatccgcaaa ataaaagctt aacgtactgc aaagaaaaca acgaatccaa gcggaatttc      1320
     gagtataaat gggaataatt gttgataagc catgagacgg aggaaaagga acttcaaaag      1380
     atggaaatac tgccaggaaa ttttttggta atccaagttt ggcatctaag attacaggca      1440
     ttgatgtaga tgtgataacc cgat                                             1464
//
ID   Transib-4_DBp repbase;    DNA;    INV; 3046 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3046
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 603-603 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~80bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           528..2651
FT                 /product="Transib-4_DBp_1p"
FT                 /translation="FRFSSGVFEFSNAELFEVWRKETENQNQERSILDFIS
FT                 SKISRNVDVEKHKNYLKKKSSLFCLNLSGKWKICKRNKQYFQKKYANWLQS
FT                 AIKLCFSESNEIEKRQIGRPKLDYSVKGEEAQRKEAAALSKSHGCNVSLLI
FT                 QTASKAARSQGLIDLSVVLNTLAISPEKAKDIREILKCPIKQPIRASKDEA
FT                 LALLLDQGLSKEQYCAIRDDAKHRDADIYPLYKDIAEQKKLCRPANIYISD
FT                 TVAKVPMQDLLSHTASRIVVLQEEVIMNTMRQQEVNFISAYLILSYGFDGS
FT                 TGQSNYNQAYADQGSCDSDACLFASTVMPLRLIDASGLVLWNNRTPQSVRF
FT                 CRPLKLEFLKETREAILKEDLNIKEEIEQLLPCKIMLNDRQCIYIKFQLHL
FT                 TVIDGKVLNALTSTTSSQACPICNATPKDFLANKNFKCLEFVPLLDNLKHG
FT                 LSPLHSWIRCFEFVLHAGYKLTVQKWRVTTSVDKKTIADRKKEIQRMFWER
FT                 LGLRVDKPKQNGSGNTNNGNTARRAFTNFETFAEVTGVDKEIIRNLRVILI
FT                 CLSCQLPIDLDKFEQFCFKTGEQIVDCFPWLPMTATVHKIIVHSRQIMENT
FT                 VLPVGYFGEEASEARNKIYKADRLHHARKHSRVNNFMDVFNRALDTSDPVI
FT                 SSKNLMKRIRKHKSMELPSEVLSLLLCNFEGQEQIEEIEDKIDDFYFMYDE
FT                 DIETENIL"
XX
SQ   Sequence 3046 BP; 1051 A; 502 C; 576 G; 917 T; 0 other;
     cactatgggg aatttgcccg atttcatggt atttagtcat tttatcaaag tttaaatatt        60
     tgggtttttt ttatgtaaac atattaaaaa catatggctc catatgactc cataccaaaa       120
     ttgttaatta acactgcact gttaaggcta ttaactgtca aagtcagctg ttgcagctca       180
     aaagcacgtg gttgagaata ggcagttttt tgttagcaac tttgaaagtg cgatacttaa       240
     aagttaaaca atatattaat ttaatttgtg atggaaaaca atcatactgg ttcgtatttt       300
     atgttgtgtg tattaatatt ttgatatgtg cctgtcttac taatatttag ccaattttaa       360
     aactggtcta agaggtaatt tttttggaaa aaaaaatcaa ctttgcatag acttacaaaa       420
     aaaacatatc gttgcaacag tgtaagttta atatatgtcg tagagccatt aattataaat       480
     aaaaggcaat ttgtctcaac gtgcaaaaat gcgcacaatc tgcgtaattt cgtttttcgt       540
     caggtgtctt cgagttttcg aacgcggagc tttttgaagt atggcgtaag gagacggaga       600
     accaaaacca agagagatca attcttgatt ttatttcgag taaaataagt agaaacgttg       660
     atgttgaaaa acacaaaaac tatttaaaaa agaaaagcag tttattttgc ctaaatttaa       720
     gtggtaaatg gaagatatgc aagagaaaca aacaatattt tcagaagaag tatgcaaatt       780
     ggctgcaaag tgcaataaaa ctttgtttct ctgaatccaa tgaaatcgag aaacgtcaaa       840
     ttggacgccc gaaattggat tattcggtta aaggagaaga agcacagagg aaagaagctg       900
     cagctttatc gaaatcacac ggatgcaacg tctccttgtt aattcaaaca gccagtaaag       960
     ctgcccgatc tcagggcctc attgatcttt ctgtagtcct taatactctt gcaattagtc      1020
     cggaaaaggc aaaggacata cgggagattt tgaaatgccc tattaagcag cctattcgtg      1080
     catcaaagga cgaagcattg gcccttttat tagatcaagg cttaagcaag gagcagtatt      1140
     gcgcaattag ggacgatgct aagcacagag atgccgacat ataccctcta tataaagata      1200
     ttgcggaaca aaaaaagctt tgtagacctg ctaatatata cattagcgat actgtagcaa      1260
     aggtaccaat gcaagatctt ttaagtcata cggcttctcg aattgttgtg cttcaagaag      1320
     aagtcattat gaatacgatg aggcagcagg aggttaattt tatatcagct tatttaatcc      1380
     taagttatgg gttcgatggt agtaccgggc agtcgaatta taaccaggcc tatgctgacc      1440
     aaggatcatg cgattcagat gcatgcctat ttgcctcaac cgtaatgcct cttcgattaa      1500
     ttgatgcttc tggacttgtt ttatggaata accgtactcc gcagtcggta agattttgcc      1560
     gccctctcaa attggagttt ttgaaagaaa caagagaagc catattaaaa gaggacctga      1620
     acatcaaaga agaaattgag caacttttac catgcaaaat aatgttaaac gacaggcagt      1680
     gcatttacat aaaatttcaa cttcatttga ctgtcataga tggaaaagtg ctcaatgcac      1740
     tgacaagtac aacgtcttct caagcatgcc caatatgtaa tgcaacacct aaggatttcc      1800
     ttgccaacaa aaattttaag tgcctcgagt ttgttccact tttggataat ttaaagcacg      1860
     ggttaagtcc gcttcatagc tggataaggt gttttgaatt tgttttacac gccggttata      1920
     agttaactgt tcagaaatgg cgagtgacaa catctgtgga caaaaaaacg attgcagatc      1980
     ggaaaaagga aattcagcgt atgttttggg agaggctagg cttaagggtc gataagccaa      2040
     aacaaaatgg atctggcaat acaaacaatg gaaacacggc acggcgagca tttaccaatt      2100
     ttgaaacatt tgcagaagtt accggagttg ataaagaaat aattcggaac ttaagagtta      2160
     ttttaatttg cttgtcttgt caactgccta ttgatttgga taaatttgaa caattttgtt      2220
     ttaaaactgg ggaacaaatt gtggattgtt ttccatggtt gccaatgacg gcaactgttc      2280
     acaaaataat tgtccattca aggcaaatta tggaaaatac agtacttccc gttggctatt      2340
     tcggagaaga agcgtcggaa gcacgcaaca aaatttataa agcagataga ctgcatcacg      2400
     cacggaagca tagtcgtgtt aataatttca tggacgtttt caacagagcc ttagatactt      2460
     ctgatcctgt aatttcttca aaaaatctta tgaagcgaat tcggaaacat aaaagtatgg      2520
     aacttccttc agaagtttta agccttttat tgtgcaattt tgaaggccag gagcaaattg      2580
     aggaaattga agataaaatt gacgactttt attttatgta tgacgaagac attgagactg      2640
     aaaatatttt ataaaccttt tattttatta ttatcaactt ttgtatataa aacaatttcc      2700
     agcagagtcc atatcaataa taaaaaaacc gttctgaaaa atcttatttt tttaaaaagt      2760
     ttttgattaa tttatccaaa tgggagggcg gaaccacgcc cattttacca aaaactattt      2820
     ccaacaatct ccataagact aataaaaaaa accgtttcaa aaaatcgtat ttagtttaaa      2880
     agttaatata taacatttcg tcagggaagg ggcggagcca cgcccatttt tctaaaaaca      2940
     ttcctatcgg tgtctataat aataataaaa aaaccgtttc gaaaaatctt acttagttta      3000
     aaagttatta attaatacca tgaaatcggc caaattcccc atagtg                     3046
//
ID   Transib-4_DEl repbase;    DNA;    INV; 2648 BP.
XX
AC   .
XX
DT   25-JUN-2021 (Rel. 26.08, Created)
DT   25-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2648
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4021-4021 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.
XX
SQ   Sequence 2648 BP; 899 A; 448 C; 494 G; 796 T; 11 other;
     cacataggag tatttatcaa aaaagaccga acaaacttga aaatcgtgaa gtgcttttaa        60
     gctcatcaaa actgcacttt tccatatctc taataaccgc ctcttctata aacagacccc       120
     cctttcgcca cagtccactt acttggtgac gacggcgttc gcaagtacgt ttttgtgctt       180
     tttgcgtgtc tttgtttttg gtgctctagc agtaattttg tgttcaaaat aaattcgtct       240
     agccgacaag tggaaaaaag caacttgatc atggaattaa gaggtaagta ctgtataaaa       300
     atcattttat aagttatttc ttcattatat tttgatttat acattcaatt ttagaaaatg       360
     cgtttttcat caattttttt tattgaaact tgtcgcctga aactttttgt gctaaaatat       420
     actctgtcga taacttaaaa gaaaaaaaca ttttctccca acgcacccca ttttgttttt       480
     tagtgtttca aagtatgcga tcatcatttt cattaaatcg acaatgaata gtgtttggtt       540
     tcttttattt cagttgcttc agaaagtgtg aaaaaaaaca ccagaatgga gctatattct       600
     attttgcaag agttcaaagg gaaaaaaata agtgataaat tcatattttt ggaagataag       660
     ctggtaaaac tgacatcatg tccacccgaa aaaggtataa ttttacgcgt ttcatgaaat       720
     atttcaagac cagttttaaa gaaaattgga gtgctgatcg taatacacat gcacgatttg       780
     taaaaattaa cgaagagttg ctgaacgtta cattggaact tcctgctttc acccataaag       840
     caggacgccc agtgaaacta ttcagtgaat taactgatcg aagcaagcgg cgcagaacaa       900
     aagaattacg ggcccaagta tctgttgatg aattaacgta cgctgccagt gtaagccaag       960
     gagcttctgg aaacagtgac gtttctaaaa ttttaaaaga aattacaaca tctccaagta      1020
     gagctaaaaa gtttcgaaaa gtagttttgt cagctgaaaa ggaacaaatt gtgcggaaat      1080
     acactccaca agaagcacta gcactgtttg tagatggaaa ttttaccaga aggcaatgga      1140
     aattaataca aggcggtcgc aaagaaatat acccttgata ttcattcatc caaaaagcga      1200
     aaaaagagtg ttatccagcc gaagaatgcg taaaagtgac agaaactagt tttgaagtgg      1260
     gacttcaatc tttgttggac cacacggttt ttcgactgat taaatattta aaggaagcga      1320
     ataatacttt atctgaatat gagaagcaac atcttatctt aataacaaaa tggggctgcg      1380
     acggatcgca tcagcccaat tcaaacaaaa atttagcgac atgagaatga tgatggcaat      1440
     ttatttttaa gctctttagt gcctgtgaga ttgattgtgt cagttaatgg agagatgaaa      1500
     aaaatcgtat ggcagaatcc agtgccttct tcagtaagat tctgtcgacc tattcgggcc      1560
     cgattcgtgc acgaaaccaa ggatgtaact attgaagaag tcgagttcat tgaaaaacaa      1620
     tcaaaaaacc ttactgttat tgaagactct attaaaataa cccatactat gttgcttaca      1680
     atggttgatg gaaaggtatg caatgctctg acagatacaa catcgaccat gagatgctat      1740
     atatgtgggc agacttccaa agattttaat aaattaaaaa aaggaaacgt tactgaagga      1800
     gcgctgaagt ttggactctc tgtcttgcac gcgagaattc gctttttgaa ttacttttgc      1860
     acttggcata taaaataccc ctacagaagt ggcgagctcg gacgcttgaa gaaaagaaag      1920
     tgttgaaaga aacaaaagaa agtattcaaa aaagktttag agtagagatg ggccttcttg      1980
     ttgacatacc caaagctggc tatggcaaca gtaatgacgg caacacaksc agaaggtttt      2040
     tcgaaaaccc agaatgctct tcacgaataw cakgagtcac cgtasaatta ataaagatgt      2100
     tccaagttat ccttgagatt ktatcatgtg ggsacgagat cgatccgaat aaatttgata      2160
     actatgcaca aaagamtgct cgattgtacg ttgatctgta tggttggcat ccaatgtcgc      2220
     ctacagttca caagatcttg atkcatggtg ctcaaataat atcagaagcc attgtaccga      2280
     tcggacagct atcagaggaa gccgctgaag cacgaaataa acattttagg aaacatcgtg      2340
     tggactatgc cagggaattc tctwgagtag actgcaacag agatatatta aataggttat      2400
     tgctaacaat gtctatttta atggaaaggt ccacgaatta ttatagcacc gactctgatc      2460
     aggataatga ttctgattga ctgaatttca tcaaaatttc tttaaaattt ttattttttt      2520
     cttcaaattt ttcccgatat ttttttttac atgaaattat gatttagtat tggcttgcat      2580
     ttcataaaga attaacaaat gctaataaat aattttgtcc ggatttttat ttcaaatact      2640
     cctatgtg                                                               2648
//
ID   Transib-4_DF repbase;    DNA;    INV; 1522 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.06, Created)
DT   04-JUN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila ficusphila
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-1522
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(6), 802-802 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~45-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1522 BP; 547 A; 243 C; 250 G; 479 T; 3 other;
     cactatggtc caaaagtcgg attttttggc ataaagtcga aatttttatg ttaatgtttt        60
     gtatttttgg ttttaaattc ttaaagttaa tacatcatac ttctaaaaac ttaaataata       120
     aatctttaaa agcttcactg aagctttgta tgagctttca aaagaatgca atcgatcagc       180
     tgtttaggat taggaaattg gcgccaaatt cttttgttta cgtttgtgcg tgcaattaaa       240
     aattatctgt ccaaacaaac tcaagttaat aatgkaaatt gaagatcaag gtgtgtagta       300
     ttcactgtat attatacatt tatgtttagt tttagtattt gagctgwgtt taatgtccaa       360
     tttatgtgta tttttgtaga aaattaacat gcgtcccctg tgtttcgtgg ataaaaaaaa       420
     cgaccccatg tctgccgaca aaaactaaca acgtcagttt gttcacataa atgtcstttt       480
     tcaacgctaa ttaacacatt ttccccgttc gtcccccttt tcttacaaat ccacaatatt       540
     cagggacgtt cgagtttagc catagcgatc ttttcgatat ttggcgcagc aacaatcgca       600
     aaataccaat tgtgtctgat tggatttacg aaaaactgag caaataccac atagaatata       660
     ggaaaagatt agatataaat aaaaaataag tcattttgaa tcctttataa aagaaaaacc       720
     cttttaaata agctccacgt tatattagta gcaatttcct gtaatcacta tataaactct       780
     gaaaagtttc gaattttttg taagaaaacg tttgacttat atatgcataa atacccgtgg       840
     tacccaatgt caccaacaat tcacaaggta ttagtccacg gttttcaaat aaataattcg       900
     acgttggttc cactagggtg cttaggcgaa aatgcttcag aggcacggaa taaaatctac       960
     aaaaaagaca gactctcaca cgcaaggaaa aatagtcgaa tcaatactat gactgacctt      1020
     ttccacaggg cgatatattc ctcggatcct ttactatcta gcatttgttt aaaggaaaga      1080
     gaagggaaaa acataaaaat acctcttcct aaagaagtat taagtcttct ggagttgccg      1140
     tctgccgaaa acaaaaaccc aaatgaaaaa gaattggatg tgcaatctga ttctgattct      1200
     gatgaggacc taaacgaagg atgctctata gaactagaag aagaagaaga agagaagaag      1260
     aagactatgt ttaaaacaaa aaccaattta tttattaaaa tttattacac atacataaat      1320
     gtaagtaact tatctgaatc ttaattttta agaataatac taggaattat ttagtatggg      1380
     aggcaaaaga aggcgtggtc gcatagactc aaaatttatt ttgcttactc ttcttaaaaa      1440
     gaaaaaatag tgtgcaaaat ttgaggtctg taagtcaatt ttcagagttt atgccaaaaa      1500
     aatcgacttt tggaccatag tg                                               1522
//
ID   Transib-4_DK repbase;    DNA;    INV; 1538 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1538
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1220-1220 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 15-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1538 BP; 577 A; 230 C; 247 G; 483 T; 1 other;
     cactatgggc aaaaagtcag aaattttggc atttttacat tttttttgtt gttttgtatt        60
     aaacaaaaaa ctatttcacc tgattaacaa tactttcagg accccaaata taatttttaa       120
     acatttttaa atgttatttt ttagtacttt ttttttaacg aagtcgaaag attgagatct       180
     ggtcacacct taaagaaaaa tcgcgaaaaa gttgtttatc tttgcagttt aataacttaa       240
     caattgtgaa ttaaattaaa actgtttaat atggaatcta atagtcatgg tatgtcaaaa       300
     aagttataag ctcgatattt ttgttatatg tgttgtgttg tccaaactta acaactaata       360
     ttatctgaac acaataacat aaagctcttt tgctcctttt ttgaagcaga ttttggtttt       420
     ctaaatcaga aattggcgaa atgcaacaga aatctagacc gcttcaaatc aaaacatcca       480
     cagtggctcg cgtcaaattt aaaaattggt gtaatggaaa aggacgtgac ccatgataaa       540
     cctggtcgaa aattcttgac gtatgctgtg gcaggaccaa gactgaaacg aaaattagca       600
     tctgaattcg ccaaagaaaa agaaaattcg gtgccattat tgttgcatgc tgcttcagtc       660
     tcggcaaaaa aaaccaaaca aatggatagt gcactttcgc tacgaaacga aaatattagc       720
     ggaaatgtaa agaaacctaa gcagaatgct gttataaaaa taagtcttga taaggcctta       780
     gcctttttaa tagaaaatgg gctaacaaaa aggcaataca ttaacttaaa agccatatct       840
     cagcagcatg gatgcgatat ctattcaccg tattctgcgc ttactcaaat aaaattaaaa       900
     tgtagaccca ggcaaactat ttattctgaa acaaaggcag gagtatcgct tcaagattta       960
     ttaaatcata ctgctgaccg catattggaa attcaaaaag aagtaatttg tcaattacas      1020
     atcacgcatt gtaaactaat tgccagctat ggcttcgatg gtataatttg attttaaggt      1080
     gtaattaaca tttattttaa ttttacaggg gtatagacaa aattaaattt taaaatataa      1140
     ttgtacaaca atttagaata tgctacgaaa ttagtaaaat taaaattgtt ctatgtatta      1200
     ttgaagacta ttttaattta tttaaaaata tcttgaaagg ggcgttacaa aaggcgtggt      1260
     caaactaaca taaagaaata tataggaaat tcaattacaa ttaaatgttg aaagttttaa      1320
     tcgtctatct taaatattct aggaatcaga cttcatgcct aaaaatcaaa gactatttgc      1380
     ccaaagcttt aagggggcgg aacggaaggc gtggtcaaac tgcaaaaaaa aaaaaaccga      1440
     aattcaggca taatatttta ggcatatctg caaagtttca agcctctatc ttcaaaatta      1500
     gaattgatgc caaaaaaatc gattttttgc ccatagtg                              1538
//
ID   Transib-4_DMo repbase;    DNA;    INV; 3007 BP.
XX
AC   .
XX
DT   26-FEB-2020 (Rel. 25.09, Created)
DT   29-OCT-2020 (Rel. 25.11, Last updated, Version 2)
XX
DE   DNA transposon from Drosophila mojavensis.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DMo.
XX
NM   Transib-4_DMo.
XX
OS   Drosophila mojavensis wrigleyi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup; Drosophila mojavensis.
XX
RN   [1]
RP   1-3007
RA   Lobl E. and Carareto C.;
RT   "Annotation and characterization of transposable elements in the
RT   genome of Drosophila mojavensis and its sister species D.
RT   arizonae.";
RL   Direct Submission to Repbase Update.
XX
RN   [2]
RP   1-3007
RA   Bao W.;
RT   "Sequence updated.";
RL   Direct Submission to Repbase Update (29-OCT-2020).
XX
DR   [2] (Consensus)
XX
CC   [2]: sequence updated to autonomous consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           569..2635
FT                 /product="Transib-4_DMo_1p"
FT                 /translation="MLLEVWSSNKRQESAVVDYIVQKIGKANISDDQLNAI
FT                 ELKVKQFVRFVNYNLPKCNRMLERLKAKHPRWLESSIKVISYGRSLEKVGR
FT                 KQLSYNDAGPRLKRKLASTLASEHDNSTPLLMHAALVSSKKLKXRDTTYVL
FT                 KKAISNDNLTDVKSKLEKNDPMPLNIDEALAFLIENGLTKXQYLNIKALNK
FT                 KQRCDIFPPYAKVAENKLKCRPEDIMYSETKVEVSLQNLLNHTVDRILQMQ
FT                 QNVLEISNSTRCSLILSYGFDGSTGQSVYKQRFEEDDRIGVDHSLFVTTII
FT                 PLQLNDECNQVIWLNSTPQSVRYCRPLKLEFIKETTEQILKEKLNLDAQIK
FT                 NLKNYMYNFKGRSIFVTYKPYMTLIDGKVLNVLTGTNSCQVCPLCGAKPNQ
FT                 LLKTTDFNSAVFAVNSKSLQFGVSPLHAWIRFLEFVLKISYRLEVKKWRVK
FT                 GSDKQNVCQRKQYIQRRLRNEMGLNVDSPKQNGSGNTNDGNTARRAFNNVE
FT                 LFSNILSFDDQILRNFYTILITISCEYKVNSWKFKDLCEKTFYMYTAKYIW
FT                 YPMSPTVHKILVHGHQIMDNCIVPVGVLGENASEARNKIYKNDRKSHARKS
FT                 SRLENISDVFNRALDSSDPLISSLSLKERARRNRRKNLPSEVVELLEDCSH
FT                 NTSNQHTGSTESQDEEDDSDGTDEDTYDDNCIELEEEESD"
XX
SQ   Sequence 3007 BP; 1076 A; 467 C; 563 G; 899 T; 2 other;
     cactatgggt aaaaagtccg attttttggc ataaatccaa aaaaaaaaat tttcagtact        60
     cgccaacttt ttttatattc tcatttagaa aactccagcc gacttaaaaa caatttttat       120
     aaaattttgg ggactaccca taatgtttta agcttcgtca aagtcagctg attcagggtt       180
     gcatggtaaa ttgaaaaaag tgcgggaaat cattctctac tttcaatgtg tgtaaatctt       240
     tgggtgtttg agatagtgaa aaatatttgt tatggaaaag attcaggaag gtatgtcaaa       300
     taagatcatt atattaattt tggtagttct gtgatttatc gtccaattgt gcaatgtgtt       360
     gttgttgtgt atttttagat aaaaattaaa acttatttgt gcgtttcgtg agttgtaatt       420
     tttgaggcga gaaaggtatt taaaatgttt aaatgagaaa atctgtgtta atatttgctg       480
     aacccaataa taaaaagact tcttgctcat atttgcccct tcaaaaaata atcggcatgt       540
     tgcagttaca catgagttct gcaattccat gctgctggaa gtgtggagca gcaacaagcg       600
     acaagaaagc gctgttgtag attatatcgt acagaaaata ggcaaagcaa atatttcaga       660
     cgatcaacta aacgccattg agcttaaagt taaacaattt gtgcgatttg taaattataa       720
     tttgcctaaa tgcaatcgaa tgctggaacg gctaaaagca aagcacccgc gttggctaga       780
     gtcgagcata aaagtgattt catacggcag atcacttgaa aaagtaggtc ggaagcaatt       840
     aagctataac gatgctggac ctcgattaaa acgaaaattg gcttctaccc ttgcatcaga       900
     gcacgacaac tcgactcctc ttttgatgca tgctgcattg gtttcgtcca aaaaattaaa       960
     gkaaagagat actacatatg ttttgaaaaa ggctatcagc aacgataatt taactgatgt      1020
     taagagtaaa cttgagaaga acgacccgat gccattaaat attgatgaag cattagcgtt      1080
     tttaattgaa aatggactga ctaagcakca atatctcaat ataaaggctc ttaataaaaa      1140
     acaacgatgt gacatctttc caccttacgc taaagttgca gaaaataaac taaaatgtcg      1200
     acctgaggat atcatgtact ctgaaacaaa agttgaagtc tcgttgcaaa atttgttgaa      1260
     tcacacagtt gatcgtattc ttcagatgca gcagaacgtt cttgaaatat ccaattcaac      1320
     gcgttgttcg ttaatattaa gttatggttt tgacggttct acaggacaat ccgtttataa      1380
     gcagcgattt gaagaagatg atcgtatcgg agtggatcac tctttatttg taacaacaat      1440
     aattccatta caattaaatg atgaatgcaa tcaagtaata tggcttaatt ctactccaca      1500
     atctgtaaga tattgtcggc cattaaaact cgaatttatt aaggaaacta cagaacaaat      1560
     attgaaagaa aaattaaatt tggacgcaca aataaaaaac cttaagaatt atatgtataa      1620
     tttcaaagga agaagtatat ttgtgactta caaaccctac atgacgttaa ttgacggaaa      1680
     ggttttaaat gttttaactg gaaccaactc ttgccaagta tgcccattat gtggagcaaa      1740
     gccaaaccaa ttactaaaaa ctactgactt caactctgca gtatttgctg ttaattccaa      1800
     aagccttcaa tttggagtaa gcccgttaca tgcatggatt cggtttctgg agtttgtatt      1860
     gaagatttca tacagattag aggtgaaaaa atggcgtgtt aaaggatctg acaagcaaaa      1920
     cgtatgccaa cgaaagcagt acatccaaag aaggttgcga aatgaaatgg ggcttaatgt      1980
     ggacagcccc aaacaaaatg gaagtggcaa taccaatgac ggcaacaccg caagaagagc      2040
     tttcaataat gtcgagctgt tttccaacat tttaagtttt gatgaccaaa ttttaagaaa      2100
     cttttataca atattaatta ctatttcttg cgagtataag gtaaactcct ggaaatttaa      2160
     agatctatgc gagaaaacct tttatatgta cacggcaaaa tacatttggt atccaatgtc      2220
     tccaactgtc cacaaaattt tggtgcatgg acatcaaata atggacaatt gtatagttcc      2280
     agttggcgtt ttgggagaaa atgcgtctga agcgcgaaac aaaatctaca agaacgatcg      2340
     gaaatcccat gctagaaaga gcagtcggct agagaatata agtgatgtgt ttaacagagc      2400
     acttgactca tctgatccac ttatttctag ccttagctta aaagaacgag cgcggcgaaa      2460
     taggagaaag aatttgccat cagaagttgt tgaactctta gaggattgtt ctcacaatac      2520
     ttcaaaccag cacaccggct caaccgaaag ccaagatgag gaagatgatt ctgatggcac      2580
     agatgaggac acttatgatg acaattgtat tgagttggaa gaagaagaaa gtgattaaaa      2640
     tttttgttca ggtattgaaa gcaaatttta aaaaattaat tgactcatgc ttatttatga      2700
     tatttctttt gtttttctta cagcgaatgg ggcggatcca aaaatatata ttaaatatat      2760
     gtaaaacata ttaaaaatat atataaaata taaatagtat ttaatttaca cttgtatata      2820
     aggaaaagtc ttaatttgta tactttataa atttgtatgg agggggaggg gatgtaggcg      2880
     tggctaaatt ttgaaaaaaa aaaaatccaa aattaaacaa aatacatatt agtatgtata      2940
     aaaatttcaa ccttctatct caacagggac aatttatgcc aaaatatcgg ggtttttacc      3000
     catagtg                                                                3007
//
ID   Transib-4_DRh repbase;    DNA;    INV; 1365 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1365
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1421-1421 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1365 BP; 442 A; 219 C; 224 G; 479 T; 1 other;
     aatagaaaaa aattgcaagc aaattgtctc taaaatgttc aaacttcttg atggcaaacc        60
     ggttttgtct ggaaatctaa cgggactttc taaaaataga atgcaaagcg tgatcatgtg       120
     tacattcttg cagcgcakct gtacttatca agaattttta caaaacaaaa ttgcgcttca       180
     aagtggtcaa acgtttgata tagtgatccg attttcatca ttcaaaatgc attttgaagt       240
     tgaaggtatt tactttaaat gtatatatta agaattaaat aaatccaaca aattttttag       300
     tgaaattaac aaaatcgatt taatattttt tgtgtatttt gtgaacgtct tttttatgtt       360
     tacctaaagt tttagttgtg ttcccccccg attcccccat agatattatg ttcattgtat       420
     taatcagagt ttttacttaa taaaagtgtt taagtcagct gcagaaactt gcagatgtgt       480
     gtgaaacaat caataatcta acgcatcttt ttatttcttc aaggtcaaac ttgtccagca       540
     gagcccctgt gtttgttttg tgtgtttgtc ttcgtcttta cttgtggttt acattgtgta       600
     taaaaacttc gtaatattta aaaatttttg tttttaactt ttaatttcat aggcaacata       660
     agtcagtgtg tgttcgcacg cctacatatt tttatggtgc tccaaaaaag gcacacacgc       720
     tggaaaatta cgacaagtaa ttgctgatgt ccaacaaaat ttgataaaca atcgattgga       780
     gaactttcag aagaagccgc tgaagcaaga attaaggata ttaaaaaatt ccgactccaa       840
     catacacgca aaatttcaag gatcgcctca aatacagact tatttaacag actgctttta       900
     agttccgatc catttattag tagacaaaga aaagtaaatt ataaggaaaa gtcaactcta       960
     ctagagtcaa ctcttttgtt acttgatgaa accatttaat tattatacaa ttttttatta      1020
     ttgttcgttt tgcttgttat aacttttttg ggaaggtggg cgtgggaggt ggagtgagta      1080
     atcactccca tacttttata ttacagttcc aagtttgtaa ataacttaca ttaaaaagtt      1140
     cagcctatta tgattacaag aaatgaattt atgactgctc tctcatgtga acgcaaccac      1200
     tgagaaaatc gttcctatgg aagctatagg atatagtggt ccgatctggc caatttttct      1260
     aacatatatt tataatattt ttttagattt ttggtaaaag tttcataacg atagcacttc      1320
     tagaagtatt tatggccgcg gctccataca agcccgacca ctgtg                      1365
//
ID   Transib-4_DSuz repbase;    DNA;    INV; 2910 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   21-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2910
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 116-116 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs. 36-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           767..2572
FT                 /product="Transib-4_DSuz_1p"
FT                 /translation="MWLAGNMTILSDRNESPQKKGGRPKLSYEAAGKRLKI
FT                 KLASELAVENENSTPLLLHAANISARKSTENEIIKKSDRTESLAPSPITSE
FT                 KAFAFFMENGFTKQQYINVKQISKQHGCDIYPPYSKIAEEKLKCRPAGIAW
FT                 TENEAKVSLQNLLNHTASRILLMQKEVCEVLSDVTHCTLIFSYGFDGSTGH
FT                 SLYKQKFSIAEGQSLDDSLFVTSMTPIKMIDQKQRVIWLNKSPQSIRFCRP
FT                 VKIAYVKETTSLILKENENLDNQIKNLDIYVHPYQSAEIFVKFDGHLTLID
FT                 GKVLNILTGTKSCQLCPMCGAKPTQLLTITDFNSKTFDMKPHTDQYGLSSL
FT                 HAWIRFFEFLLKISYRIELRKWHVKGNDKIELEARKHKVQAAFWNDMGLHV
FT                 DKPRQNGSGNTNDGNTARRAFSNPKLLSSILGIDHSLIQRLHVILIAINCH
FT                 YPINSEKFKIFCSETFSMYMANYFWYPMSPTVHKVLVHGYIIIEKSIVPVG
FT                 SLAESASEARHKLFKADRKDHARKCSRVDNMSDVFHRAMDSSDPLLSSFCS
FT                 TKTNRMPLPAEVVDLLDSPIISPGTEDTDEENCNDDVSDTFEIELEEEVPD
FT                 DIEN"
XX
SQ   Sequence 2910 BP; 1022 A; 496 C; 513 G; 879 T; 0 other;
     cactatgggt aaaaaacccg attttggtgc ataaacctat ttattttctt aattaatttt        60
     tatgaatggc ccatactaat cgaatctaga catcttcatt tcaaaaaaac cgccctccaa       120
     aaatttttgg tggcaactct gtagtattgc cactccaaca aagtcagcta ttcgagaggc       180
     tttgctatgt cgttaaattg gcgcgaaaaa ttggcgaact ttacgtgctt gttgttttct       240
     gtgaaaaaaa agtttaataa atatgaaaat ggaaattcct tgcaaaggta tttattaatg       300
     caaattagct taaacatttg attttatgtg tcttgttgtc cacctgtgaa ctgttttata       360
     tgtgtatctt tatagatttg aacttacaat tgtgtttgtg ttttgtggag tataacttat       420
     taatagcaca gacttgcaaa agagtaagaa cgagaaattg attacaaaag tgtccttatt       480
     gtcatacaac taatcgtttt tgctcatttt tgctcctttt cgctaaactt gcgtttatgt       540
     agagacatat gtgtttggtc acggggctct tcttgcagtt tgggaaagca acaaacgctc       600
     gcgagaagca ttggagactt acatattcga caaattgaat gccgatcatc aaaatgaaac       660
     aataataaaa acaatatcaa ctaaaattac taactttata aattacataa ataaacattt       720
     gcctcgatgc tgccgaaaca taaagcgatt tagacaaaaa cacgctatgt ggctagccgg       780
     taatatgact atactttctg atagaaatga atccccacag aagaaaggtg gtcgtccaaa       840
     attgtcatat gaagctgctg gtaaacgact caaaataaag ttggcatctg aacttgcggt       900
     agaaaatgaa aattcaactc ctttgttact acacgctgct aacatttccg ccagaaaatc       960
     aacagaaaat gaaattatta aaaaaagtga tagaactgaa tcgctggctc cgagtccaat      1020
     aacttctgaa aaggcattcg ctttttttat ggaaaatgga tttactaagc agcaatacat      1080
     aaatgtaaaa caaattagta aacaacatgg ctgcgatatt tacccccctt attcgaaaat      1140
     agctgaggag aaattaaaat gtagacctgc tggaatagca tggaccgaaa atgaagccaa      1200
     agtttccttg caaaacttat tgaaccatac cgcttcacga atattactga tgcaaaagga      1260
     agtttgtgaa gtactttcag atgttactca ttgtactctt atttttagct acggttttga      1320
     tgggtctact ggtcacagtt tatacaaaca aaaatttagc atcgcagagg gtcaatcttt      1380
     agatgattct ctttttgtta catcaatgac tcctataaaa atgatagatc agaaacaaag      1440
     ggtcatttgg ttaaataaat cgcctcagtc cataagattt tgccgtcctg tgaaaattgc      1500
     ttacgtaaaa gaaacaacgt ctcttatatt aaaagaaaat gaaaacttgg acaatcagat      1560
     taaaaacctg gatatatacg tgcatcctta tcaatcagcc gaaatttttg taaaatttga      1620
     tgggcacctg acacttatag acggcaaggt gttaaatata ttaacaggaa cgaaatcctg      1680
     tcagttgtgt ccaatgtgtg gggcaaagcc cacccagctt cttactatta ctgattttaa      1740
     ctccaaaacg tttgatatga agccacatac ggatcaatat ggattaagtt cccttcatgc      1800
     gtggatccgc ttttttgaat tcttgctcaa aatatcgtac agaattgagc ttagaaagtg      1860
     gcatgtcaag ggaaatgaca aaatcgaatt ggaggcacgt aaacataaag ttcaagcagc      1920
     gttttggaat gatatggggc ttcatgtgga caagccgaga caaaacggca gtggcaatac      1980
     aaatgacgga aatacggcga ggcgggcatt ctccaaccca aaattattgt cctctatatt      2040
     aggaatagat cacagtttga ttcagcgcct acatgtaatt ctgatcgcca taaattgtca      2100
     ttaccctata aattcggaaa aattcaaaat attctgttca gaaacttttt ctatgtatat      2160
     ggctaattac ttttggtacc ccatgtcgcc aacagtgcac aaagttttag tacatggata      2220
     cataatcatt gaaaaatcga ttgttcctgt tggctcttta gcagaaagtg catcagaagc      2280
     aagacacaaa ctttttaagg ctgacagaaa agatcatgcc agaaaatgta gccgggttga      2340
     caatatgtca gatgtttttc acagagctat ggattcgtct gatcccctat tatctagttt      2400
     ttgctcaaca aaaaccaacc ggatgcctct gccagcagag gttgtagatc ttttggattc      2460
     gccaatcata tccccaggca cagaagacac agatgaagaa aattgtaacg atgatgtaag      2520
     tgacactttt gaaatagaat tagaggaaga ggtaccagac gatattgaaa actaaaaaac      2580
     aaggaaaaaa taaaaagagt aagttaaaat tgttgagtta ttaaaaaaaa ttaatcgaat      2640
     tttttttcag tgttcttcaa atgtaacaat ggatcccaaa tatgttaccg gtttttttct      2700
     ataatgtaac accaaatagg attaaaatta taatttataa taattactta ttttaaaatg      2760
     tatttttaac cactgtgcgg tggacaaatt aaaaaaaaaa acaaaaacca aaattttgtt      2820
     taaatttaaa taatacacca aaaaaagttt caagtcaata tcttaaaaac tagagtttat      2880
     gcaccaaaaa cggttttttt gcccatagtg                                       2910
//
ID   Transib-4_DTa repbase;    DNA;    INV; 2773 BP.
XX
AC   .
XX
DT   28-JUL-2021 (Rel. 26.09, Created)
DT   28-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2773
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4705-4705 (2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. 96% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(748..1278,1376..2017,1972..2550)
FT                 /product="Transib-4_DTa_1p"
FT                 /translation="MYNRWCSXTGKNSVKAXSIYQSLKLKIENDGYVMKAE
FT                 YLDELEKCNKAFVLEKYSDWFXKXESXSFNSDVHTTDVNNVERGRPKISFS
FT                 ECSSRTKRRRIAKIADLDESAAEYLRSAAVEEQISPLSANEVISLITEANL
FT                 TKHQYILIRELVNSKLTTELFCSYDNILKEKKNVILKTCCRRSXLIGXWGF
FT                 DGSSGYSEYKQKVENNNLEDSHLFVTSYVPLVLVAAEDTSKIIWKNPRPAS
FT                 TRYCRPVRFQFLKESTELSIKEEIYFKDKINNLVSTKITVGNKTIYVHHIL
FT                 QLTMVDGKICNALSKTPSSKCYVCNAKPTEMNDIQTSLEREVHQDRFQFGL
FT                 SPLHAYIRFFEYFIHLSYRLDVQVWQVRSVDGKEKVLQRKGIFKQNFVRKS
FT                 SSKKRNIQTEFRLKMGLIVDKPKVGGFGTSNDGNTARQFFGNPGLSSEITG
FT                 LDKDLIERCATILQALGSGYKINVDKFKSFALQIAFDLTRTYSWYYLPPTV
FT                 HKILIHGPSIIEHALVSIGELSEEAAESRNKDIKKFRLQHTRKISRIATNE
FT                 DLLNRLLLSSDPFITGQRKLPPKKNSVFNKNVFDLLE"
XX
SQ   Sequence 2773 BP; 911 A; 447 C; 505 G; 896 T; 14 other;
     cacagtggtc ggccccatag gccataaata aaaaattaaa agctaaaatt ttcgctaaaa        60
     gtgtgccaac actgtctcct tatagctcaa acttttttaa tcagctgtta tttttgtttt       120
     gatccagctg tcctctttag gaatagcagt taaacataga cgaaaaaaat ttatcggttt       180
     tgcagttttt cgagttgcaa gtgacgacta taatcaaaaa ataaaaactg tatttaaaaa       240
     agactctgac aacaatggaa ctattaaata ttgtaaacaa aggtattagc tattatattt       300
     aattatattc atgtacttag aatgttgtgt ttagttttta ataatttttg tatacttgtc       360
     caattttatt aggaaataat atgtaaacta aaatttcact tagactttta gttgtgaagt       420
     taatcgaagt taacgatcaa acttatattg aaatattaac caatctttac agattatttt       480
     gaccaaattt cagctgctag tttttgctag ccgctgcgtt accttaaaaa gaaacacgtg       540
     gtctcgccgt tttcaatagt ttttttcgtt tgtgaaacwg tgctttttgt ggtgtgkttt       600
     gtgataattg tctttagctt cgtctttctc tacgtctctg ttcgttttgt tgtgattgtc       660
     atttcagttm atktgttcat tttcttttta taawttgtac atatttgtat aggagcttct       720
     tacgaatgcg awcttagccg catttatatg tataataggt ggtgttccgw gacgggtaaa       780
     aattcagtca aggctcamag tatatatcaa tctttaaaat tgaaaataga gaatgatggc       840
     tacgtaatga aagctgaata cttggatgaa ttggaaaaat gcaataaagc wttcgttttg       900
     gaaaagtatt cggattggtt tkcgaaaaak gaatcgwttt catttaattc cgacgtacac       960
     actacagatg taaataatgt tgagcgtggt cgtcccaaaa ttagtttttc tgagtgttca      1020
     agccgaacaa aaagaagacg gattgctaag attgctgatt tagatgaatc tgctgctgaa      1080
     tatttacgtt ctgcggctgt tgaagaacaa atctcgcctt tgagtgctaa tgaggttatt      1140
     tcgcttatca cggaagcaaa tttaacaaag caccaatata tcctcattag ggagttggtt      1200
     aatagtaaac ttactacaga gctattttgc agctatgata atattttaaa agaaaaaaaa      1260
     aatgttatcc tgaaaacata actattagtg aagcacatgc agaagtggag cttcaaagct      1320
     tattagacca cacaacaaag cgcattatcg agttgcagga taatgtaata aatgatgttg      1380
     tcgacgatcc tkccttatag ggwagtgggg tttcgacgga agctctggat acagcgagta      1440
     caagcagaaa gtggagaata ataatttgga agacagccac ttgtttgtca cttcatatgt      1500
     tccgcttgtc ctagtagcag ctgaagacac ttccaaaatt atatggaaaa acccacgacc      1560
     cgcatccaca cgatattgtc gacctgttcg atttcaattt ttaaaggaat caactgaact      1620
     gagtatcaag gaggaaatat actttaaaga caaaattaat aatcttgttt cgacgaaaat      1680
     aactgtgggt aataaaacaa tatatgttca ccatattttg caactcacaa tggttgatgg      1740
     caaaatttgt aacgcattat ctaaaactcc atcttcaaaa tgttatgtat gcaacgcgaa      1800
     gcccacagag atgaacgata ttcagacaag tttagaaaga gaagttcatc aggatcgatt      1860
     ccaattcgga ctgtcacctc ttcatgcata catacgattt tttgaatatt ttattcattt      1920
     gtcgtacaga cttgatgtac aagtctggca agttcgtagc gttgatggta aagaaaaagt      1980
     tcttcaaaga aaaggaatat tcaaacagaa tttcgtttga aaatgggatt gatcgtcgat      2040
     aagccgaagg ttggtggttt tggtacatcg aatgatggaa acactgccag acaattcttt      2100
     ggtaatcctg ggctatcatc agaaattaca ggcctagata aagaccttat tgaaagatgc      2160
     gcaacaatat tacaagcact gggttcagga tacaaaatta atgtggacaa atttaagtcc      2220
     tttgctctcc agatagcctt tgatctgaca aggacatatt catggtatta ccttccgcct      2280
     accgttcaca agattttaat tcatggacca tccataattg aacacgctct agtgtcgatt      2340
     ggggaattgt cagaggaagc tgctgagtct agaaacaagg acataaaaaa atttcgtctg      2400
     cagcacacaa gaaaaatttc tcgaatagcc acaaacgaag acctactcaa tcgtcttctt      2460
     ctttcgtctg atccttttat aacaggacaa cgaaagttac ccccaaaaaa gaattcagtt      2520
     ttcaataaaa atgtttttga tcttttggaa taaaatatac gtgctaaaac tagaatcaaa      2580
     atggttcggt cttaaaatgt tgatatatgg atatagagca gggggtgtaa cttaagaagt      2640
     aggttgaata taaacaattt tttgtttttg ttttatttat tatattttta tagaattttg      2700
     gaaaaaattt aaaattttta tcttcactat aagtattttt ggccgccctc cccatacaag      2760
     cccgaccact gtg                                                         2773
//
ID   Transib-5_DAn repbase;    DNA;    INV; 2852 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2852
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 281-281 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. Both termini are uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           719..2581
FT                 /product="Transib-5_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MWCSVIGSFPDKAKKVYDDLQHRFQSDGYEIIENISK
FT                 KVLDYLFKKFADMWNKSYRNKVKVIQVNSDWLAKFIYSNLCSCLSQSRKSS
FT                 DRGRPKLSLAVCSERTKRRRIAEISEVNQSAADDIRSVCRQPNPSIFPAKE
FT                 CEVVXLITEANLTKQQYEHIKSFVNSKIEAXFFPCYNNILKGKQESYPELI
FT                 SVTESDIEVPLQSLLDHTASRILKLQSDVTDKLDESHNYLTLIGKWGFDGS
FT                 SGHSEYKQKFXNNNLEDSCLFVTSYVXLQLFVKSDNDKEQKIIWKNPRPSS
FT                 TRYCXPIRIQFQKESVNLIKNEEEYFKNKIQQLTPTELKTATNRKFCVDHI
FT                 LQLTMVDGKVCNALSETSSSKCYICQARPTEMNDIDKCLQKKVRTDRYEFG
FT                 LSPLHAYIRFFEYFLHVSYKLEIRQWQIRGEENKELFQRRKQNIQSEFREK
FT                 MGLIVDKPRTGGSGNSNDGNTARTFFNNPHLSAEITGIEQHLIEKCATVLQ
FT                 ALSSGYKINVEKFRKLALDTARELTTKYSWYYLPSSVHKILIHAPDVIQYA
FT                 LVSIGELSEEAAESRNKDVKKYRLNHTRKTSRIATNKDLINRLFLTSDPFI
FT                 TGQRKLPSKCKTILSKSAFDLLE"
XX
SQ   Sequence 2852 BP; 993 A; 455 C; 485 G; 909 T; 10 other;
     tgcacagtgg ttgattccat aggccaaaaa taaaaaaacg amagtccgaa mttttccatt        60
     ttttgtctta aaattatttc ttaacagatc aataaaacaa acggtatttt cattttcgtt       120
     ctgtcccttt ccctcgctgt acgaatagcg ggagaagaga gacaaacaaa actcgtggtc       180
     gttgcagtga acgcagctta aaaattagct ccttcgaaaa aatttaatta aaatagtaaa       240
     tcgtggtcaa tcataatcaa ataaaatgaa ttatgaaaat aaaggcatgt actataaaac       300
     ggagtaattt ttatgtcaat atgtgtcgtg ttattgtttt aaagttagtg tttcattagt       360
     gacctgacga gtggcgaatt tttgtgtata catagaatta agataaagaa aaagttgtgt       420
     tacccgtctc tccctttaat gaaacttatt tattaataat agtgaatgtt ttcttagtct       480
     atgttctaaa tttgagctgc aactttttgc aaccttctga cttattccat tttttgtgtt       540
     cgagcaaatt ttgtgttttg ctgttttcgt gcgtagtttg tcttttgttg tgttcgtctt       600
     attcgtttgt gctttgaaat cttaattkcg caattgtgat tttttaattt aattaacttt       660
     gtttttatat acaggcaatt catatcagtg caaaatatca cgtttaaata tttttgagat       720
     gtggtgctca gtaataggtt catttcctga taaagctaaa aaagtatatg acgacctaca       780
     acatagattt caatctgatg gttacgaaat tattgaaaat atttctaaga aagtacttga       840
     ttacttattc aaaaagtttg ctgatatgtg gaataaatcc tatagaaata aagtaaaagt       900
     tattcaagta aattctgatt ggttagcaaa atttatatat tcaaatttat gttcatgttt       960
     aagtcaatcc agaaaatcat ctgatcgagg acgtccaaaa ttaagtctag cagtgtgctc      1020
     agaaagaacg aagaggcgaa gaatagcaga aatatcagag gtcaatcagt ccgctgcgga      1080
     tgacatacgt tcggtttgca ggcaaccgaa tccttcgata tttccagcaa aggaatgtga      1140
     agtagtagmt cttataactg aagctaattt gacaaaacag caatatgaac acatcaaaag      1200
     ctttgttaac agtaaaatag aggcaaamtt ttttccctgt tacaataata ttttaaaggg      1260
     aaaacaggaa agctatccag aactaataag tgttacagaa tctgacatag aagttccgct      1320
     acaaagctta ttggaccaca ctgcgtctcg cattttaaag ttacaaagcg atgtaacaga      1380
     taaacttgat gagtctcata attacctcac tttaataggg aaatggggct tcgatggcag      1440
     ctctggacac agcgaatata agcaaaaatt tkaaaataat aatttggaag acagttgctt      1500
     atttgtgaca tcatatgttc stcttcaact atttgtaaaa tctgataatg ataaggaaca      1560
     gaaaattatt tggaaaaacc cacgaccatc gtctacccgt tattgcsgcc cgattcgcat      1620
     tcaatttcaa aaggaatcag taaatttaat taaaaatgaa gaagagtatt ttaaaaacaa      1680
     aattcaacaa ctaactccca ccgaacttaa aacggctacc aaccggaaat tctgtgttga      1740
     tcatatcctt caactcacaa tggtggatgg caaagtgtgc aatgccttaa gtgaaacatc      1800
     atcttcaaag tgctacatat gccaagctag acctacggaa atgaacgaca ttgacaaatg      1860
     cctacaaaaa aaagtcagaa cagatcggta tgaatttgga ttgtctccat tacatgcgta      1920
     tattcgtttc tttgaatatt ttcttcacgt atcatataaa cttgaaatcc gtcaatggca      1980
     aataagaggg gaagaaaata aagaactgtt tcagagaagg aaacaaaata ttcagtccga      2040
     atttcgtgaa aaaatgggtc ttattgtcga caaaccaaga acaggtggca gtggaaattc      2100
     aaatgacggc aacactgcga gaacattttt taataatcct catttatcgg ctgaaataac      2160
     aggcattgaa caacatttaa ttgaaaaatg tgcaacagta ctgcaagcct tgtcgtctgg      2220
     atataaaatc aatgtggaaa aatttcgaaa actagcacta gatactgcaa gggaactaac      2280
     aacaaagtat tcctggtatt atttgccttc ttcagtgcat aaaatactta ttcatgcccc      2340
     agatgttatt caatatgcat tagtatccat tggagagctc tcagaagaag ctgcggagtc      2400
     gaggaacaaa gacgttaaga agtatmgact caatcataca cgtaaaacct cacgtattgc      2460
     cactaataag gaccttataa atcggttgtt tttaacttca gatcctttca taaccgggca      2520
     acgaaagtta ccctccaaat gtaaaacgat tctttcgaaa agtgcttttg atttgttaga      2580
     ataattttat tgtttatttt attttgtata ttgataataa aatgaaatta aaacatattt      2640
     aataaataag gaattttcga gcctgaaagt atgcaattga attaaagctt taaaatgtta      2700
     ttttgtattt ttttatggcc ttaacgaatt gtttttgcct ttgtttaata atgttcttca      2760
     taatattgag tctataaagm agcacaaaaa ttttgagctc catattccaa ctggaactat      2820
     ttttggccgc cttcgccata cataatcaac ca                                    2852
//
ID   Transib-5_DBi repbase;    DNA;    INV; 2908 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-5_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2908
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 746-746 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. ~40-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(937..2052,1928..2593)
FT                 /product="Transib-5_DBi_1p"
FT                 /translation="MSAKKAKNTDISHILKTTINSPDSSKLRQQLSLKEPI
FT                 PLSPDEALAFIIENSFSKQQYINIRLKSIEKNCNIYPSYEKVREAKEKCRP
FT                 IDISVSDTIAEVPMQNLLNHTASRIILYQKPVFQQFIDINKVKLIVSYGFD
FT                 GSTGQSVYKQRFNDTEPICLDQSLFVTTIIPLQMVDQIGRIIWRNRCPQSV
FT                 KYCRPLKIEFAKESRDHILNSKFLLDSQIKDLKPFMYEAEQLRVEVLFEVH
FT                 MTLIDGKVLNTLTGTNSTQSCPICGASPKDFLKETEVNSQKFKPKPNSYQY
FT                 GVSPLHAWIRFLEFVLNISYRVSIQKWRISTDSDKEIMMVRKKDIERKLWS
FT                 EMGLHINKPSQNGXKLXRWQYGTKSIFECWYARRTLSESFGLKWGYILTNQ
FT                 VRMXXNXNDGNTARRAFSNVKLFASILELDEELLNKLHIILIVLSCEYDVC
FT                 FNKFKKFCEETLRLHLIKYPWYPMTATVHKILVHGPEIIKSSVLPVGCLGE
FT                 NASEARNKYYKRDRILHARKNSRVNNLTDVFHRALDSSDPYLSSIAQKKSS
FT                 KSHPLPSEVIALLVPPKPEDAAQVYSVEDEFESILYFDLDLEEESLN"
XX
SQ   Sequence 2908 BP; 1008 A; 462 C; 542 G; 892 T; 4 other;
     cacattggga tgaaatgcct ttattttggc caaaacctaa taagttcgtg ttaatatata        60
     aataatgtta caattatttt aagctaagaa atgtccctag acatcgaaaa tatttaattt       120
     gtattttatt gtgcagccct cgtcttgcac cagctgttga aagtcagctg ttcttgccac       180
     gtggtgcatg caagcttgct gattagtgaa gttcctaaat tttggcgttc tcgtattttt       240
     aaacagtttg accaattgaa ataccttaaa atggaaaata tttcgcatgg tatgtagaaa       300
     atatttgtat aagtgtttaa ttatatgtgc ttttgtattg tcatgttttt aaggtaatac       360
     gtaaacacta gttttgttga ttctaaccta aaaatatttg tgtttcgtgg agcatatcta       420
     gcaagataca acaggattca aataacaact tatgtggtag tatgagttat tatgtgtata       480
     ttcagatagc atttaaataa tttgcgggaa tttgcggggg ggttaaatat ttcaacagat       540
     tcaagcaagg ttgctattcg tcgaggtgac ctactagaag tttggctgga taaaaatcgc       600
     aatgtcaacg ctacttttga ctgggtttgc gtcgaagtaa ttccaaatga ttttccggaa       660
     aacgatttgg aggtgattaa aaacaaaata aaaaacttta ttgttcaaat taagagacta       720
     ctgaacaaag cgcacagaaa tattcgtcgt ttcaaagaag aaaatgctag ctggcttgca       780
     tcggagctaa tattttattc aaaagatgat tgtagtcata atcttggtgg acgacctcgg       840
     gtctcttatg acgaaggaag tttacggcat aaaagaagac ttgcttccga acttgcaaag       900
     gaaaattcaa cacttctact tgttgaagca gctgctatgt ctgctaagaa ggccaaaaat       960
     acggatattt ctcacatatt aaaaacgaca ataaatagtc ctgacagttc aaaattaagg      1020
     caacaacttt cattgaaaga gcctatacca ttatcacctg atgaggccct agcatttatt      1080
     atagaaaact cgttttccaa gcagcaatat attaacatac gcttaaaaag tatcgaaaag      1140
     aactgcaata tatatccaag ctacgaaaag gtgagagaag ctaaggaaaa gtgtcggcct      1200
     atagatataa gcgtatccga tactattgcc gaagtgccaa tgcagaactt actgaaccat      1260
     acagcatctc ggatcatttt atatcaaaag cctgttttcc aacaatttat tgatataaat      1320
     aaagtaaagc taatagtaag ctatggtttt gacggttcaa ccggacagag cgtttataag      1380
     caaaggttta atgataccga acccatttgc ctggaccaat ctttgtttgt cactaccata      1440
     attccccttc aaatggtgga tcaaattggg agaattattt ggagaaacag atgtccacaa      1500
     tccgttaaat attgcaggcc gctaaaaatt gagtttgcta aagaaagccg ggatcatatt      1560
     ttgaattcca aatttctttt ggattcgcaa ataaaagact taaagccatt tatgtatgag      1620
     gcggaacaat tgagagtgga agttctattc gaagtacaca tgacgctcat cgatggaaag      1680
     gtgttgaata cattaacggg cactaattca acacaatcct gtccaatttg tggtgccagt      1740
     ccgaaggact ttttaaaaga aacagaggtt aacagtcaaa agttcaagcc taaaccaaat      1800
     tcttatcagt acggagttag tcctctccac gcatggatta ggtttttgga attcgttctc      1860
     aacatctcat atcgtgttag tattcaaaag tggcgaatta gtacggactc tgacaaagaa      1920
     ataatgatgg tacgcaagaa ggacattgag cgaaagcttt ggtctgaaat ggggttacat      1980
     attaacaaac caagtcagaa tggmtkgaaa ctsmaacgat ggcaatacgg cacgaagagc      2040
     attttcgaat gttaaattat ttgcctcaat attagaactg gatgaagagc ttttaaacaa      2100
     actacatatc attttaatag ttttatcatg cgaatatgac gtttgtttta ataagtttaa      2160
     gaaattttgt gaagaaacgc ttcgtttgca tttaattaaa tatccgtggt atccaatgac      2220
     cgctacggtc cacaaaattt tagttcatgg tccagaaata attaaatcat ctgtacttcc      2280
     tgttggttgc ttaggcgaaa acgcatctga ggctcgcaac aaatattaca agcgcgatag      2340
     gattttgcat gccaggaaaa atagccgagt gaacaattta acagacgtat ttcaccgagc      2400
     tttggattct tctgatcctt acttatcaag catcgctcaa aaaaagagct caaaatcaca      2460
     cccattgcca agtgaagtta ttgcactttt agttcctcca aaaccggaag atgcagccca      2520
     agtatatagt gttgaagacg agtttgaaag tatactatat tttgatcttg atttagaaga      2580
     agaaagttta aattaataca agtttatgta cgtattttta agttttcgtt aattaagata      2640
     tgttataata tgcaaaaata ttaaaatata aaaattttct aacaattgtg gataaaaaat      2700
     aaggaagaga aaagtattac taatatgaaa gtgtaattaa tatgaatttt ataaatactg      2760
     cagttcaatt atgtgggagg caaggttgta gtgttaaaaa aaaaatccga aattcaaaaa      2820
     taatataagc agcaaattct ccaaatttca actttctagc tttaatatta cggttatggc      2880
     caaaataaag acatttcatc ccaatgtg                                         2908
//
ID   Transib-5_DBp repbase;    DNA;    INV; 2301 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-2301
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 604-604 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. Partial sequence.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..847,912..1394,1435..2079)
FT                 /product="Transib-5_DBp_1p"
FT                 /translation="VLLLFVPLKKNALEVSFTFNNNTLVDIWNNNNRNADA
FT                 VTAYIMEEINEDNLNKSNIQQIKAKXTNFEYYIKRYLRKYSRNXERFKSIH
FT                 TEWFAKCMEIXIDVEDTAKPSPSKMGRPKVGYAEAGPRLRRQMASEVAVQN
FT                 DCSTALLLHAAPASARKSNENKVVGLLRNVMTEENVVNPEITNQARPARIS
FT                 NIEALPFLLENNFTKQQYISCTQLYKAHGCIICPGYDLIRSTTFQCRPSGI
FT                 SISDTVAKVYLRGLLNHTAERILTLQNDVLEKMENVTDFTYPDFLDQSLFV
FT                 STVILIRLIDSSNRVIWLNRSPQSVRFCRPLKIEYAKESSAKILGEKEXLD
FT                 MQXAKLEKFKXQRKNISVDFKTYMSLIDGKVLNVITGTKSNQCCPICAVNP
FT                 KRLIEITDFNSETFRPQPGSLKYGVSPLHAWIRFMEFVLNISYRMDIKTER
FT                 RKFKQTVWKVMGLHISVPKQYGSGNSNDGNTARRIFANTKLLASITLFDEV
FT                 ILNNFYYMLIAASCEFSISPKKYRKFCKDTFNLYMKTYPWYPKSPTVHKIL
FT                 VHGANIINVCIVPVECLRENASKARNKHYKMDRCSHARKNSGLSNVADDFN
FT                 RAMDSSDPLISGYYINKRLQNLKKKLLPIEVVNLLENPTSELSSYNFFNDE
FT                 KPNLTTKAM"
XX
SQ   Sequence 2301 BP; 841 A; 376 C; 419 G; 657 T; 8 other;
     tgttttgctc ctttttgttc ctttaaaaaa aaatgcactt gaagtttcct ttacgttcaa        60
     caacaacacg cttgttgata tttggaacaa caacaatcgc aatgctgatg ctgtcacagc       120
     gtacataatg gaagaaataa atgaagataa tttgaacaaa tcaaacatac agcaaattaa       180
     ggcaaaagwg actaattttg aatattatat aaaacgatac ttgcgcaaat acagtcgaaa       240
     tcwtgagcga ttcaagtcaa ttcacacaga atggtttgca aaatgtatgg aaatawaaat       300
     tgatgtggag gatactgcta agccatcgcc atcaaagatg ggtcgtccaa aagtaggata       360
     tgccgaggcc gggcctagac tacgaaggca aatggcatca gaagttgccg ttcaaaatga       420
     ttgctctact gctttacttt tgcatgccgc ccctgcgtct gcccgtaaaa gtaatgaaaa       480
     taaagtggtt ggcttattgc gaaatgtaat gactgaggaa aatgttgtaa atcccgaaat       540
     aacaaatcaa gcgagaccag ctcgcatttc taatattgaa gcattacctt ttttattgga       600
     gaataatttc acaaagcagc aatatatcag ttgtacacaa ctctacaagg cgcacggctg       660
     cattatatgt cccgggtacg acttaataag atctacaaca tttcaatgca gaccgtcagg       720
     aattagtatt tccgatactg tggcaaaggt ttatctgcgg ggtttgctaa accacacagc       780
     tgaacgaata ttgaccttac aaaatgatgt tttagagaaa atggaaaatg taacggactt       840
     cacctattag ctatgggttt gatagatcgg cgggtcaaag ttcatataaa caaaaatttg       900
     attcagatta acctgatttc ttagatcaat cgctgttcgt atccactgtc atactaatac       960
     gtctaattga ttcttcaaat cgcgtaatat ggttaaatag aagcccacag tcagtaaggt      1020
     tttgcaggcc tttaaaaatt gaatacgcga aagagagctc cgcaaaaatc ttaggcgaaa      1080
     aagaawattt agatatgcaa ktagcgaaat tggaaaagtt caaatkgcaa cgtaaaaata      1140
     tttctgtgga ttttaaaaca tatatgtcat taattgatgg aaaggtatta aacgtcataa      1200
     ctggtacaaa atccaatcaa tgttgcccaa tctgtgcmgt aaatcccaaa agacttatcg      1260
     aaatcacaga ttttaattct gaaacatttc gacctcagcc tggctcttta aaatacggcg      1320
     taagtccmtt acatgcatgg attcgattta tggaattcgt cttgaatata tcgtaccgta      1380
     tggatataaa gacctgacaa atcaaaggcg atgataaaaa taaaatcata ataagaaaga      1440
     aggaaattca aacaaacagt atggaaggta atgggtttgc atattagcgt accgaaacag      1500
     tacggaagtg gtaacagcaa tgatggtaac acggcgagac gaatctttgc aaatacaaaa      1560
     ctgcttgcat ccataacatt gtttgatgag gtcattttga ataattttta ctatatgtta      1620
     atagcagcat cgtgtgaatt ctcaatcagc ccaaaaaagt accgaaaatt ttgtaaagac      1680
     acttttaatc tatatatgaa aacatatccg tggtacccaa agtctccaac tgtacataaa      1740
     atattagttc acggagcaaa cattataaat gtctgtatag ttccagttga atgtttgcgt      1800
     gaaaatgcat caaaagctcg aaacaaacat tataaaatgg accgatgttc tcatgccaga      1860
     aaaaattctg gattaagtaa cgtggctgac gattttaata gagccatgga ctcatctgat      1920
     ccattaatat caggctacta tataaataag aggctgcaaa atttgaaaaa gaaactgctt      1980
     ccaatagaag ttgtaaacct tttagagaat ccaacatcag agctgagttc atacaatttt      2040
     tttaatgatg aaaaacccaa tctgacaacc aaagcgatgt aaaacatgag aattcttttg      2100
     ttttggatga agaagattct taactatttt tttttttaag tttggaatat tgttaaaaca      2160
     ttgtaaaata aatataataa aaatttaata gaaattttta attaatagaa atttttgtac      2220
     aagtgtcggg gttataaagg ggcggaaaat aaaggcgtgg tcaaattgac taaaaaaaat      2280
     ccgaaatcaa gctaaaatat t                                                2301
//
ID   Transib-5_DEl repbase;    DNA;    INV; 2656 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2656
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4038-4038 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(452..526,875..1563,1649..2438)
FT                 /product="Transib-5_DEl_1p"
FT                 /translation="MSTQLTKKQIYDIWIASDKNKRLXAEGKRNSAAIVTE
FT                 LTLNSPNRGTQIKNVQNQNFTESSIPTEEALSMIQDANLSVHQYDTIRQRI
FT                 NKIVKNLLPSYDKIKECKKDCYAEVTVTESLAACNVQSLVDNTIQRLCLAQ
FT                 REALNSIEHLKMGGKELSLIIKWGCDGAQQKKYKQKFSSSDGIDENLFSTC
FT                 MVPIQMNYNVDGCKKIIVWQNPAPSSTRYCRPIRLNFKKETTELINEEVTL
FT                 VKKELKCFNLLKLNVTQTCYICGAKPSEMNRPEXILNKPLNDQAMSFGLSP
FT                 LHSWIRFMECLLXVAYRLDVKVWQARGYQIKXQVKARKXLIQNKFKEKLGL
FT                 LIXVPTPQAGNTNDGNTARRFFRNTEITAEITGLNLXLIHRFHIILETLXS
FT                 GFPINLAAFDEYTKETRKLYLKEYSWYNMPVSVHKVLYHGKDVIASCILPI
FT                 GQLSEEAQEARNKDVRRYREMFTRKTSRTDTNTDLINRLLVSSDPFLASLR
FT                 NIPKKSRSPLEHDVLVLLANE*"
XX
SQ   Sequence 2656 BP; 943 A; 419 C; 446 G; 828 T; 20 other;
     cacagtgtgg gagtcttaca gtttagctgt acaaaagtaw atttttcaac tttaaccaaa        60
     ttcgtccaaa tawttttttt ttwatacttt attcaatgta tataattatt atataaacta       120
     ttttctagtc gtcgcgaaat ctgtttcwca cttattgtga aattccgttt tattcaagta       180
     ctgatattct gcgaagttcg aaatcaaatt gtttttttct gcatttcttt tgttcatagt       240
     ttcgtcaasg acgacaacaa aattagagct ttatttaaac ggtactgcaa gcacaatcct       300
     tatctaagca acagatcttt ttcattggkt ttttttcaat tgacttttgt gtttaaagga       360
     gaaaaaattt agtttcttat taaagtttga gctcgaagtt gaaatatcgt gcgtattttt       420
     gcagcaccca cmcatttttt tatttttcaa aatgtcgacc caactaacga aaaaacaaat       480
     ttatgatatt tggattgcaa gtgataagaa caagcgtttg satgcggttt gtgatttttt       540
     ttggaattat catcctttag ttaaattttc tgaaggctct aaaaaagagt taaaggcttt       600
     tctaaaaaat ctgtgtttac aatttgaaat aaaatggaat caatgttatc gttatgagga       660
     acggttttaa aaaaaaaaat aaaatctggt tgaatggtaa tttgaattta ccattcacgg       720
     tattgcaaga aatttctctt tcatccaagc cggggagacc acaaaaaaat ttgaggattg       780
     ctgcgatcgc accaaaagaa gaaaggtaca agatcttatt gattctacta gccctgaaaa       840
     aattgcagtt gcaaaccaag ttaacctatt taaggaaggt aaacgcaact ctgctgcaat       900
     tgttacggaa ttgacattga attctccaaa tagaggaacc caaataaaaa atgttcaaaa       960
     tcaaaatttt actgaatcat ctatacctac tgaagaagcg ttgagtatga ttcaagatgc      1020
     taatttatca gttcatcaat atgacacaat acgccaaagg attaataaaa tcgttaaaaa      1080
     tcttttacct tcctatgata aaattaagga gtgtaaaaaa gattgttatg ctgaagtgac      1140
     tgtaacagag tccttagcag catgtaacgt tcaatccttg gttgataata ctatccagcg      1200
     attatgccta gctcaaagag aagcactgaa ctcaatagaa catcttaaaa tgggtggaaa      1260
     ggagctatcg ttgataataa aatggggttg tgatggagcg cagcaaaaaa agtataaaca      1320
     gaaattttca tcatcagatg gtattgatga aaacctattt agcacatgca tggtgcctat      1380
     tcaaatgaat tataatgttg atggatgtaa aaaaatcata gtttggcaaa atccagcacc      1440
     ttcatctaca agatactgcc gcccaattag gctgaacttt aaaaaagaaa ccacggaatt      1500
     gataaacgaa gaagtgactt tggtgaaaaa agaattgaaa tgcttcaacc tgttaaaatt      1560
     aaagtagaca atttctatgt aatggtgaaa ccagtgttta ttctgaccat gatagacggc      1620
     aaaatttgca gtgctttatc taacgtagcg taactcaaac atgttacata tgtggcgcca      1680
     aaccttcgga aatgaacagg ccagaatwaa ttttaaataa gcctttaaat gatcaagcca      1740
     tgagctttgg attatctcct ttgcattcat ggattcgatt catggaatgt ttacttmatg      1800
     tagcgtacag gctcgatgta aaagtgtggc aagccagagg ttatcaaata aaacwacagg      1860
     ttaaagccag aaagkaatta attcaaaata aattcaaaga aaaactaggt ttattgatas      1920
     acgtcccaac cccacaggca ggtaacacta atgacgggaa taccgcaaga cgtttcttca      1980
     gaaatacaga gattactgct gagataacag gtctgaatct gkaacttatt cacaggttcc      2040
     acataatttt agaaacttta kgktcagggt ttcctataaa tttagcggct tttgatgaat      2100
     acacgaaaga aaccaggaaa ttgtacctta aagaatactc ttggtacaac atgcccgtct      2160
     ctgtccataa agtattgtat catggaaaag atgtcatagc atcatgcatt cttccaattg      2220
     gacagctatc ggaagaagcg caagaggcaa ggaataagga tgttagaaga taccgggaaa      2280
     tgttcacccg gaaaacatca agaacagata ccaacaccga tcttataaat agattgttag      2340
     tatcttcgga tccattcctt gccagcttgc gaaatattcc caaaaaaagt cggagtccac      2400
     tagaacacga cgttttagta ttattggcaa atgaataaat actttttatt gttttmtaat      2460
     gatttttwtt gttttastca ttttggatta aattatattt ttctatatga ttccaatawa      2520
     ataattttgt atttcaaata aaaaaaaata aataaaattg ataaaaacca acgtttaagt      2580
     ttaaaaataa tgtatttcat tcaaataaat atcgaaacaa ttaaatcccg ctaaattttg      2640
     attttcccac actgcg                                                      2656
//
ID   Transib-5_DK repbase;    DNA;    INV; 1955 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1955
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1221-1221 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. ~50-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1955 BP; 660 A; 329 C; 320 G; 644 T; 2 other;
     tgcactatgg gtaaaaaatc cgattttggt gcataaacct atttattttc ctaatgaatt        60
     tttataaata gcctatattt atcgaatcta aatatcttca ttagaaaaaa acagttttcc       120
     aaaaattttt tgtggcaact ctgtagtgtt gctactccaa caaagtcaga tgtttgagat       180
     actttgcaat gccgtgaaat tggcgcgaaa aattgtcaaa ctttgcgtgc ttattgtttt       240
     gtgtgaaaaa aaagttttat aaatctaaaa atggaaattc cttgcgaagg tatttattaa       300
     tgcaaattag cttagacgtt tgtttttatg tgtcctgttg tccacctgtg aactgtttta       360
     tatgtgtatc tttatagatt tgaactaaca attgtttttg tgttttgtag agtataactt       420
     attaatagca cagacttgca aaagagtaag aacgagaaac taactacaaa agtgtcctta       480
     ttgtcataca actaagcatt tttgctcatt tttgctcctt tttgctaaac ttgcgtttat       540
     gtaggtacat aggtgcttgg tcacggggct tttcttacag tttgggaaag caacaaacgc       600
     tcgcgggaag ccttggagac ttacatattc gacaaagtga atgccgatca tcaaagtgaa       660
     acaataagca aattaatatc aaataaaatt actaacttta taaattacat taataaacat       720
     ttgccacgat gttgccgaaa cataaagcgt tttagacaaa aacacgccat gtggctagac       780
     ggtaatacgg ctttgtgatg aaaatgaatc cccacataag aaaaatcgat tgttcctgtt       840
     ggctctttag cagaaagtgc atcagaagca agacacaaac tttacaaagc tgacagacaa       900
     tatcatgcca gaaaatgtag ccgggttgac aacatgtcag atgtttttta cagggccatg       960
     gattcgtctg atcccttgct gtctaatttt tgcttaaggg gttatccggg ttttgaaatt      1020
     tcaaaaagca aaactgtagg aatgggagaa atttaaagcc cagcgcgtcg tatgagtcac      1080
     aactggcaat taaaacttta aackcgtttt tctcaaaacc actttcttga agtcggtagt      1140
     caagatttct cgaaaactac tggaccgatc gacttcagat tttccacact tcttctagac      1200
     atgtttttct tgtctctgaa caaaggattt tttatatctt caattagatc cgattttata      1260
     acccaaaata tggccaaaat tgacgtaaaa gtgccatttt tcatgaaaaa cgctcccaaa      1320
     aattcaattt ttaatttttt aaaaaatcct tcgttcaaag acaagacaca taagctaaca      1380
     gaaaaatttt ggwtttttga tttcaaataa aaattgacgg agaaaccctg cctaccgcaa      1440
     ggacataatt ttttttaggg ttaagttcaa ccctccctca acggctcatt tgtgaatatt      1500
     ttttgttcaa aattttacag aatttagttc aaaccttatg tatttatgta gaataaatga      1560
     aatttgcaaa attgtcatag gatcttttaa aaaaaattct ggaaaatagg cctttttttg      1620
     tggttctaaa cccggataac cccttaaaaa aaccaacagg atgcctctgc cagcagaggt      1680
     tgtagatctt ttggattcgt caatcatatc cccaagtgtt ggccacaatg ttacaatttt      1740
     ttttccaaaa agtaatacca aacgggattg aaattataat ttgttttatt tattttttta      1800
     aatgcatttt gaaccactgt gcagtggaca aattaaaaaa aaaacaaaaa ccaaaatttt      1860
     gtaatagttg aagtaataca ccaaaaaaaa tttcaagtca atatcttata aactagagtt      1920
     tatgcaccaa aaaccgtttt tttgcccata gtgca                                 1955
//
ID   Transib-5_DRh repbase;    DNA;    INV; 1443 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1443
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1422-1422 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs. ~70-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1443 BP; 496 A; 233 C; 250 G; 462 T; 2 other;
     cacagtggcc gatttggctg ttttagctta agattaagca aattttgaac tgttaaaaat        60
     aataaaagtt ttgttttcta ccgatagtaa aatagtcatt tatcgaaaaa aaaactaacm       120
     ctgaaaaatt cgataaacta gatcggctgt tagccctcaa aggtaacata tggtagcact       180
     aaacttctca aagcgtatag cttgattgat gcacttattt ttatatttgc gacattttgt       240
     tggatttcac ctgttttgaa acaagttccc cattttccta aagttcaagg tatgtagtaa       300
     aataaaatga atgttttgtg ccctgtgagt agatgttgta ttcgtagttt tagttcaaat       360
     ccatcaatgt ttgtagcmcg ctttttgaaa gaaaacttca gcttctgtag actaaaactt       420
     tgtgaagccc gtcccggccc gcaaaaagtg aatatctgtg gtaaactatg gttcgtccag       480
     tgtgtaaatt attcaagatc agctgccctt acgtgcccct gctaaagttt gggatatttt       540
     cagcaatcat gtcggtctgc aaacaagcac tttttgcagt atggcatggg gaaacagacg       600
     ccacgaagaa gaatactgca ctagttgagc atatttttga gaattttcta gacaaatcta       660
     aatgttatga aacggatttg aattttatac attgcaccgt taaaaatttt tgtaaaattc       720
     tatgtaaaag gtggagaaaa tgtaataggg atataaagcg tttcgagaac aagaacgcgc       780
     tgtatggctt ctggatacac cattaacatt cagagatttc gcgaatatgc tttcgaaact       840
     gcacgcattt ttgttaaaga atatccgtgg ttttacatgc catcctcagt gcacaagatt       900
     ttgattcacg gagcggatat tatcaaaact gtaccacttc caatcgggat gttgtcagaa       960
     gaagccttgg aagcccgaaa caaagattta agaaattttc gcttgaacca tacgcgcaaa      1020
     aactcgcggt ctaacacaat ggaggatctt ttgcacttat tgttagtatc gtcggatcca      1080
     gtaataacaa gtttatgcaa aagttcggcc aataactcga gcaaacaagt ttcttttgat      1140
     attgaaggtc aaaatttact tttggactac aatgtacaac aagaaaattc cgattcagaa      1200
     tcggaaaatt gaaataggtt tattttttta aataacatct ttaaaaacaa aataaatatt      1260
     caattaaaaa aaaaacaaaa aaaaaatttt aatttaaaaa taaaaaatta aattaaatta      1320
     aaagtgctaa attttattcc tttttgggtt gacattccat aaaaatttca aactttgtaa      1380
     aattatcgtt attttttatg aaattccatt tcttaagcta gataagccaa atcggccact      1440
     gtg                                                                    1443
//
ID   Transib-5_DSuz repbase;    DNA;    INV; 2945 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   21-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2945
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 117-117 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs. 35-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           774..2654
FT                 /product="Transib-5_DSuz_1p"
FT                 /translation="MKGNTTLPLKKSNRPVGRPLLPFESKGERAQRLQAAE
FT                 LSKFQGDDVFLLVHAATAAARKQGLHDLAAVLQILGSTPEKAKQVREGLTK
FT                 PVDQPISASKDEALALILDQGLTKEQYCSIRDDIRKRNVDIYPIYKNVAEQ
FT                 KKQCRPGKINVSETVAKVSLQDLLEHTAFRIVTLQKDVIHGVLANQHTDFL
FT                 SAELIVSYGFDGSTGQANYNQAYADKRSCNGDSCLFATTIMPLRLIDSSGN
FT                 LLWNNRTPQSIRFCRPLKLEFLKETKEVILEESRDIQLQIEMLKSTMFKVS
FT                 LNDTQFVYVRFSPYLTAIDGKVLNALTDTKSFQACPICHSSQRDFLGNKNF
FT                 KCLKFLPVSDNLKYGVSPLHCWIRIFEFVLHAGYKLEVKKWPITDPCDKQA
FT                 MLKRKASIQEMFWAKLALKVDKPKQGGFGNTNTGNTARRAFANFKKFSEIT
FT                 GVDQQIIYNLRIILICLSCQLPINLEKFEAYCHQTGEMIVDSYPWLPMTPT
FT                 LHKIIVHSRQIMENTVLPVGCFGEEASESRNKIYKSDRLHHSRKHSRFESL
FT                 GDVFKRALDTSDPVISSLNLSRRIKKHKNLSLPIEVIQLLSCEHEYISDFS
FT                 EQDELEDNSLFFLENFELENEENDENKEN"
XX
SQ   Sequence 2945 BP; 969 A; 538 C; 597 G; 841 T; 0 other;
     cactatgggg aaaattacca ctttatctgg catttgcatg ttttttaaaa gttttctaat        60
     tacgacaatt ttactgttaa cgcattaaga aaacatcaga ctgttatgcc ccaaactcaa       120
     aatgttaaat ttaacagtcc cctgttagaa aaacggctgt taagtcagct gttgcaatcg       180
     aaagcacgtg cggctaagtt gtgtgaattt gtacgctgag tttggatttt aatatttaat       240
     gatggaacaa caactagagg aaaaccaaaa catgaatgct gatctcgcag gtttgcactg       300
     tgtgttaaat gtactaaatc gttaaaattg tgcgtgtgta tactaatatt ttgcagtttt       360
     ctaagagctt ccttagctga atttttagaa acaaatttca actttggaaa ggattatcta       420
     agagagttta gaattgttta agtgtttgtc caagtgattg ttgtagcgtt gtcaattctg       480
     agtttacagg aattggtcct aatgtcatat ttttccatat tttggcggaa tttgcatttt       540
     tattaggtaa cctcactttt tccaacgtcg acttgtttgc agtgtggaat agcgagaggg       600
     gccggcacga gcgagagaag gccgttcaaa gatattttga actgcatgcg tgcaataatg       660
     tggatgataa tattttaaaa cataaaagtc accaattttg caacaatttg tattacaact       720
     ggcttaaatg tcatagctct tataagaact tcgaaacaaa acattccaca tggatgaaag       780
     gcaacacaac tttgccttta aaaaaaagta acagaccagt tggacgacca ctacttccat       840
     ttgaatcgaa aggcgaaagg gctcaaagac tgcaagcagc ggaactttcc aaattccaag       900
     gggacgatgt ttttttgcta gtacatgcag caaccgcagc tgcccggaaa caaggactac       960
     atgatcttgc tgcagttctt caaatactag gaagtacccc ggaaaaagcc aagcaagtca      1020
     gagaaggatt gacaaagccc gttgatcagc ctataagtgc gtccaaagac gaagcgttgg      1080
     cattaatttt ggatcaagga ttgaccaagg agcagtactg ttctatccga gatgacattc      1140
     gtaagagaaa tgtggatatc tacccaattt ataaaaatgt ggcagagcaa aagaagcaat      1200
     gcagaccagg caaaatcaat gtatcagaga ctgtagccaa ggtctctctg caagaccttt      1260
     tggaacacac agcttttcgg attgtgacac ttcaaaaaga tgttatccat ggtgtattgg      1320
     ccaatcagca cactgatttt ttatctgctg agctcatcgt cagctacgga ttcgatggaa      1380
     gtactggaca ggcgaactat aaccaggcat acgcagataa aagatcgtgt aacggagact      1440
     catgcctttt tgccactacc ataatgcctc ttcgactcat agactcatcc ggaaatttgt      1500
     tgtggaacaa tcgcacccct cagtccatta ggttttgtcg tccactaaaa ttggagtttc      1560
     tcaaagaaac aaaagaagtc attttagaag agagcaggga catacaattg caaattgaaa      1620
     tgttgaagtc aacgatgttt aaggtatctt taaacgatac tcaatttgtg tatgtaagat      1680
     tcagtccata tctcactgcc attgatggaa aagttctgaa tgcattaacg gacacaaaat      1740
     catttcaagc atgccccata tgccactcga gccaaagaga tttccttgga aataaaaatt      1800
     tcaagtgctt aaaatttttg ccagtttcag acaatctgaa atatggagta agcccacttc      1860
     attgctggat aagaattttt gagttcgtct tgcatgctgg gtataagctg gaggtaaaga      1920
     aatggccaat tactgatcca tgtgacaagc aagcgatgct aaaacgaaag gcaagtatac      1980
     aggaaatgtt ttgggcaaaa ctggctttga aagtcgataa gccgaagcag gggggttttg      2040
     gaaatacaaa taccggaaac actgcacgtc gcgcgtttgc caacttcaaa aaattttccg      2100
     aaataactgg agttgatcaa caaataatct acaatttgag gatcattttg atatgtttgt      2160
     cttgtcaatt gccaataaac ttagaaaaat tcgaggcata ctgtcaccaa actggcgaaa      2220
     tgattgtgga cagttatcca tggctcccca tgacaccaac actccataaa attattgtgc      2280
     actcaaggca aatcatggaa aatacggtgc ttccagtcgg ctgttttggt gaagaagcgt      2340
     ctgagtcccg caacaaaatt tataaatcgg atagacttca tcactccaga aagcacagtc      2400
     gatttgaatc tttaggcgat gtgtttaaac gagctttgga tacatcagat ccagtgattt      2460
     cttccctaaa tttatcgcga cgcataaaaa aacataaaaa tctttccctt cccattgagg      2520
     ttatccagct gctctcgtgt gagcacgaat acataagtga tttttcagaa caagatgagc      2580
     ttgaagacaa cagtctattt tttcttgaaa acttcgagct ggaaaatgaa gaaaatgatg      2640
     aaaataaaga aaattaatta aaaactgggt tttcacaatt tttagggcgg gagggggcgt      2700
     ggcgaaactc ctatctacaa cgtaagcacg tagaggttac tgaatttgaa aagttaatat      2760
     ctaaaaatgc atgtaaaata ttattttttc gattttttgg gcaaaagggg cgttgacacg      2820
     cccatttttc taaaataggt tcttatggtc tataacaaca taataaaaaa aaccgcagtg      2880
     aaaaatctct tttggtttac tcacaataat aaatgccaga taaagtggtc attttcccca      2940
     tagtg                                                                  2945
//
ID   Transib-5_DTa repbase;    DNA;    INV; 3003 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3003
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           635..2623
FT                 /product="Transib-5_DTa_1p"
FT                 /translation="MKDSISGVDFEKFSDIVDQASKKFCYRLTQMWNSSFG
FT                 NLSQLRRRHAVWLASKTVINFPETTKPVGRPTLPYNKKGFRSRRRRAADLA
FT                 KSEKENVSLLILAASVAARDLASILKLLSICPEKAKYIRKAIKTPTPKALS
FT                 TIEALALLLDQNFTKEQYLAVRDQSKKNHCDIYPLYKTVADLKIMCRPDDF
FT                 SVTESKAEVTLQSLVVHTARRLVNLQVDVVESIMQDQGTEFLSAELILSYG
FT                 FDGSSGQSNYNQKHSGGLYFGSNVFATTVTPLRLIDASKNVIWNNRTPQSI
FT                 RFCRPLKLEFVKESKECILKENEYVLNQISNLMPCKIILESGKSVYIRFKL
FT                 FLTVIDGKVLNALTNTKCTQACPICGATPSDFLNNRHFKCAKFLPIVSHLK
FT                 FGLSPLHAWIRVFEFILHAGYKSCVKKWRIYEAKDKEEVLKRKKEIQGKFW
FT                 EHLSLKVDQPKVGGFGSTNDGNTARRAFSDPQVFSNITGIDEQLISNFHTI
FT                 LICLSCQLPIAVQKFQAFCFKTAEIIIDKYPWLPMTASVHKILVHGSDIIE
FT                 NTVLPIGYFGEEGAESRNKFYKSDRLHHARKCGRVENLTDVFHRATDTSDP
FT                 IISSVNLNRRIQRQKRMCLPLEVLDLLECPSNSDNSTAGGDEEINALDLEF
FT                 EYNLELANEEEDFF"
XX
SQ   Sequence 3003 BP; 965 A; 559 C; 614 G; 865 T; 0 other;
     cactatgggg aatttgacca ctttttttgg ccaaaaccca ttttctaaaa gtcggaaaat        60
     tcaaaaaagt ttatttgtaa tgcgttcaca atagaccaat ctttagtgtt gcataccaga       120
     aattgttata gagggcgcca caacaaagga atcagctgat aaacacagct gttgcatttg       180
     ctaagcacag gcacctgcaa tattacgttt tctttgcaat ctttaagagg cctaaagtga       240
     aaaactaaac aatataacta caatttttga aatgaattcc aatctgtgtg gtttgtatta       300
     tgtgtttgtg tacgtcattc gtagaaaaag atcgtgttgt cccctttgta gagcaaaaat       360
     gtaagtagcc ttgcaaatgc atattttgga tgaagtctca tgttccatta aggttttaaa       420
     gtgagtccag aagagtccat ccacgaaatg tattgcattt tggagattat taaattcttg       480
     ttcaagtaaa tgtactttaa aatatcactt ttttcgattt tgcgagaaat ttcaattttt       540
     aggacataac ctcaatttgg caaatgaaga tttgtttgga aagtggtacg aagcaaaggg       600
     aaaagtcgca aaggagaatg ctgtgtttag ttttatgaaa gattccatat caggagtgga       660
     ttttgaaaag ttcagcgata ttgtagacca agcaagtaaa aaattttgct accgcttgac       720
     ccaaatgtgg aacagttcct ttggtaattt aagtcagctg cgccggaggc atgcagtttg       780
     gctcgcttcc aaaactgtaa tcaattttcc ggaaaccacg aagccagtag gtcggccaac       840
     actgccttat aacaagaagg gcttcagatc tcgcagaagg cgcgcagcag atctggcaaa       900
     atcggaaaag gaaaatgtaa gtctgcttat tcttgcagca agcgtggctg cacgtgacct       960
     tgccagcatt ctaaagcttc tttcgatttg ccccgaaaaa gctaaatata tacggaaagc      1020
     aataaagacg ccgacgccaa aggctttgtc cactattgag gcattagctc ttcttctgga      1080
     ccaaaatttt acgaaagagc aatacttagc tgtacgggac caatcaaaaa aaaaccattg      1140
     cgatatatat ccattatata aaacggttgc tgacctaaaa ataatgtgtc gacctgatga      1200
     cttttcagta accgaaagta aagctgaagt aacgctgcag agtcttgtag tccacacagc      1260
     aagacgactc gttaatttgc aggttgacgt cgtcgagagc attatgcagg atcaaggtac      1320
     agagttttta tcggcggaac tgattttgag ttacggcttt gatggaagct ctgggcaatc      1380
     caattacaat caaaagcact cgggaggact atactttggc tcgaatgtat ttgctacaac      1440
     agtcacaccc ttacggctta tagatgcttc gaaaaatgtt atttggaata accgaacccc      1500
     tcaatcaatt cgattttgca ggccgttgaa gctagaattt gtaaaagaaa gcaaggagtg      1560
     catcttaaag gaaaacgagt acgttttaaa tcaaatatcc aacttaatgc cttgcaaaat      1620
     tatcttggaa agcgggaagt ccgtatatat caggtttaaa ttatttttaa cagttataga      1680
     tggaaaagtt ttgaatgcgc tgacgaacac caaatgtact caagcttgcc caatttgtgg      1740
     agccacacca tccgattttc tgaataacag acatttcaag tgtgccaaat tccttcccat      1800
     cgtcagccat ttgaaattcg gattgagccc tcttcatgcc tggattcgag tgttcgaatt      1860
     cattttgcac gcaggatata aaagttgtgt gaagaaatgg agaatatatg aggcaaaaga      1920
     caaggaagag gttcttaaga gaaagaagga aatccaaggc aaattttggg aacacctttc      1980
     cttgaaagtc gatcaaccga aagtgggggg gtttggaagt acaaacgatg ggaacactgc      2040
     tcggcgagca ttctccgatc ctcaagtttt ttcaaacatt actggcatcg acgagcagct      2100
     catttctaat tttcacacaa ttttgatatg cctttcatgc cagctgccaa ttgcggtgca      2160
     aaaattccaa gctttttgtt ttaaaactgc cgaaataata atagataaat acccctggtt      2220
     gccaatgacc gcaagtgttc acaaaatact tgttcacgga agtgatataa tcgaaaacac      2280
     cgtgctccct attggatact tcggtgaaga aggagcggag tctcgcaata agttttataa      2340
     atcagatcgt ttacatcacg ctaggaaatg tggtagggtg gaaaatctaa cagacgtgtt      2400
     tcaccgagcc acagatactt ctgatccgat catttcatca gtaaatttga atagaagaat      2460
     tcagcgacag aaaagaatgt gtcttccatt agaggttttg gacctattgg aatgcccgtc      2520
     aaattccgat aacagcacgg cgggtgggga tgaggagatt aatgccttgg acttagaatt      2580
     tgaatacaat cttgaattgg caaacgaaga ggaggacttt ttctaagagg tttgtaggaa      2640
     aaatatatgc ctaactatac attattaact tcctttcgtt atagggccac caaatgcttt      2700
     agatgggttt atatcacttt ccgccttaat accttgttaa aggcgtgcca cgcccactat      2760
     tttccaataa atataacctg atactgtaac agaacttgtt tttaattgtt aattagtact      2820
     ctaagaaatt tcaaaatttg cataacctac aaaaaataaa tgggcggtgc cacgccctct      2880
     atttttctat ggataataga tattggtcaa cttaacccaa ttccgaaaac agaagtcgaa      2940
     tatcatgatc cgttcttgag ttattaattt tggccaaaaa aagtggtcaa attccccata      3000
     gtg                                                                    3003
//
ID   Transib-6_AAe repbase;    DNA;    INV; 4107 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Transib DNA transposon family from Aedes aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4107
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1307-1307 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 5-bp TSDs. TIRs are ~620 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1047..1068,1164..2770,2839..3053,3139..3307)
FT                 /product="Transib-6_AAe_1p"
FT                 /note="transposase."
FT                 /translation="MAGTTNTVELDKRYIFNLWVDTKGSFEEKKRNVLTYV
FT                 LEACAIDADVSPGVASKIEYKVELVCSYFKQRWCKHGRSKRNVLNRYFKYF
FT                 EKPFKLTENILLTSRNIPSGRKSILFEESSNITKRKKTADIRNRFRSKELA
FT                 YATQMKLREERLTDAAAIIREATQTTPSRATRIRDSWKQTENNPVYAYTDM
FT                 EALALMVDSDLSVSQYNSIQSGAKKRNANIYPPYNRVLAAKKTCYPADEFI
FT                 TISDTEIEINLQQLLNLTSERIVEVVEEKLNNFTDAELLDIEMTIKYGMDG
FT                 STGNSEYNQVFENDDGSKTDSSIFMSALVPIKAAWKEKVLFQNPRPSSTRL
FT                 CRPIHIQMATETAELAIRERDYLARQIEMLEPTKLVKNGRKICVRYNMLLT
FT                 MVDGKICSALTETKAAARCYVCKATPKQMNNVDKISNLHVDESAFQFGLSI
FT                 LHAWIRFLEYFLKVSYRLEVKKWAPRGANKEAMLKRKAMIQQRFKVELGLH
FT                 VDKPRAGGSGTSNTGNVARRFFENAVAVAEITGLNLPAIQRCGTILQVMAS
FT                 GRKINTDAFSSYCEETARLLIRLYEWYYLPASIHKILFHGSAIMEHFLVPI
FT                 GQLSEEAQEAKNKEWKRKISRKSTNEDLIHWLLVSSDPVLAEARGWPKSKI
FT                 KSLSDDAKLLLINLQDEEEEE*"
XX
SQ   Sequence 4107 BP; 1350 A; 714 C; 788 G; 1253 T; 2 other;
     cacagtgatt ttttttgccc atttagtgat cgaaatagca tagcgcctaa accattcatt        60
     ttagaaaaaa agtttgttca gaggagtttc ttgatttgta aaagcgcttc ttttggcact       120
     agcggacagg tgattaaatc acctaaaagt gagataaaaa aawttttttt tacctgattg       180
     agatagacga ttggtgtctt cagcaaagtt gtagtacttg taaattcaag acactttgtc       240
     gaagacacca aatttctacc tcttatagat tacaagatac agcatgtttt ttcaaaatgg       300
     cccccaaaaa tcaaaatttt aatataactt tttttcaata tttttcacat ttttcatgtc       360
     ttctacaaag ttgtttgcct accaaatata cacgtttttg ccgaacattt caacttagta       420
     tctctcatgc tgaaaaagtt atttcaaaat aatcgatatt ttttgggctt ttttctactg       480
     acatcatgcg tttggacgca gaatgacgca cctaaccgtt tgcgattctt aaaggactat       540
     cttttggctc tcaaatgata ctaaaaactt ttggccggga gtgatctttt gattgctacg       600
     cacaacctag tgaaactata aaatkgcata tatttgcgat ttaaaaaccc ttcttctcgt       660
     tttaatcaca tttttttcat atgaggcata tttaaacggt ttcatttgtt tgcaacacaa       720
     ccattattcg tgtcactatc gtataggacg ttttcttcct tacaaaatca cgcaatatac       780
     gacatagctt ataaaaaacc ctttcacatt atacaaattc gtgtgcggtg ttggaacaaa       840
     atgaatcgtt aataatatgt gtgctgacgc ttctacagta aatgcacatg tcactactac       900
     taatgcagaa aaagttgttg ttgatttgac attaaactgt gacagcgagc gccagataga       960
     tataaatcag tggttcagtg ctattatcaa attctgttac tgctctgtta gtgttacaat      1020
     cacaaactct gcgagaactg ttaacaatgg ctggtacaac aaatacaggt aggtcgttag      1080
     gaagttagtt gtgcggttcc ttattaccat atgatttgtc attttaattt gtttggttgc      1140
     ttcaattttc cggatccttt cagtggagct cgataaacga tatattttca atttgtgggt      1200
     tgatactaaa ggcagttttg aggaaaaaaa gcggaatgtt ttgacatacg tactagaagc      1260
     ttgtgctatt gatgctgatg tctctcctgg tgttgcttct aaaattgagt ataaagtcga      1320
     acttgtttgc tcctacttca aacaacgttg gtgcaagcat gggcgctcaa agaggaatgt      1380
     tttgaaccgt tatttcaaat actttgaaaa gccattcaaa cttactgaaa acattttgtt      1440
     gacgtcgaga aatataccat ctggacgtaa atcgattctt tttgaggaaa gcagcaacat      1500
     aacgaagaga aagaaaacag ctgacatcag gaatcgcttc cgatcgaagg agctagcata      1560
     cgctacgcaa atgaagcttc gggaagaaag gttgacagat gcagcagcaa ttataagaga      1620
     agctactcaa actacacctt ccagagcaac caggataagg gattcgtgga agcaaactga      1680
     gaacaatcca gtttacgctt atacggatat ggaagctctt gctctgatgg tagacagtga      1740
     tttatccgtc tcgcaatata actccattca atcaggagcg aagaaaagga acgcaaacat      1800
     ttatcctccg tataaccgag tactggctgc taaaaagacc tgttatcctg cagatgaatt      1860
     cattacgatt tcagacacag agattgaaat caatttgcag caactactca atctaacttc      1920
     cgaacgaatt gttgaagtgg tagaagagaa attgaacaac ttcactgatg ccgaactatt      1980
     ggacattgag atgacaatca aatatggaat ggatggcagc actggtaatt cggagtataa      2040
     tcaggttttt gaaaatgatg atggttcgaa gaccgattca agcattttta tgtcggcact      2100
     tgtaccgatc aaagctgcat ggaaagaaaa ggtccttttt caaaatcctc gtccgtcgtc      2160
     cacacgtctt tgtagaccaa ttcacattca gatggcaact gaaacagctg aacttgctat      2220
     tcgcgagaga gattatctag ctcgtcagat tgagatgctt gaaccgacga agctggtgaa      2280
     gaatggccgt aagatatgtg tgaggtacaa catgttgttg accatggtag atggtaaaat      2340
     ttgttctgca ttaacagaaa ctaaagcagc agcgagatgt tatgtctgca aagcaacgcc      2400
     aaagcagatg aataatgttg acaaaatttc aaatcttcat gttgacgaaa gcgcatttca      2460
     atttggccta agtatcctcc acgcttggat aagatttttg gagtactttt taaaagtatc      2520
     ctatcggcta gaagtgaaga agtgggcacc tcgaggtgca aataaggaag caatgcttaa      2580
     gcggaaggct atgatccaac agcgtttcaa ggtggaatta ggactgcatg tggataaacc      2640
     acgcgcagga ggaagcggaa catccaatac aggaaacgtg gccagacgtt tttttgaaaa      2700
     tgccgtagct gtggctgaaa tcactggcct taatcttcct gccattcaac gatgcggtac      2760
     catattacag gtaattatgg ttaatatcat taatgagtaa tatttacaat ttttgtgata      2820
     ttcttgctcg tatgataggt aatggcatca ggacgaaaaa ttaataccga tgcattcagt      2880
     agttactgtg aagaaacagc ccggttattg attcggttgt atgagtggta ctaccttcca      2940
     gcaagtattc ataaaatact ttttcatgga tctgcaatca tggaacactt cttagttccg      3000
     attggacagc tttcggaaga agcgcaggaa gctaagaaca aagagtggaa gaggtatata      3060
     ttaaaaaaat attgattttt tcagttttaa ttctacaaaa aaaacatctt gaaatagata      3120
     tcgggaattc cataccagaa aaatatcgcg gaaaagtaca aatgaggacc ttattcattg      3180
     gttgctagtt tcatcggacc cggttctagc agaagctcga ggatggccaa aaagcaaaat      3240
     taaatcttta tctgacgatg ctaaactact acttatcaac ttgcaagacg aagaagaaga      3300
     ggaataatac aatctggttg agcataatta caaaataaat ctgttttgtt gatattttac      3360
     taattttatg tatcaaatgc atagtttgaa atttataact caatttttac atcattatcc      3420
     attaaaatca ttgtttatat atcactactt cttgcaaaga cttaaaaaac cacaaataaa      3480
     tgcattttta tagtttcact aggttgtgca tagcaatcaa aaggtcactc ccggccaaaa      3540
     gtttttagta tcatttgaga gccaaaagat agtccattca gaatcgcaaa cggttaggtg      3600
     cgtcattctg cgtccaaacg tatgatgtca gtagaaaaaa gcccaaaaaa tatcgattat      3660
     tttgaaataa ctttttcagc atgagagata ctaagttgaa atgttcggca aaaacgtgta      3720
     tttttggtag gcaaacaact ttgtagaaga catgaaaaat gtgaaaaata ttggaaaaaa      3780
     gttatattaa aattttgatt tttgggggcc attttgaaaa aacatgctgt atcttgtaat      3840
     ctataagagg tagaaatttg gtgtcttcga caaagtgtct tgaatttaca agtacaacaa      3900
     ctttgctgaa gacaccaatc gtctatctca atcaggtaaa aaaaattttt ttatctcact      3960
     tttaggtgat ttaatcacct gtccgctagt gccaaaagaa gcgcttttac aaatcaagaa      4020
     actcctctga acaaactttt tttctaaaat gaatggttta ggcgctatgc tatttcgatc      4080
     actaaatcgg caaaaaaaat cactgtg                                          4107
//
ID   Transib-6_DAn repbase;    DNA;    INV; 2934 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2934
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 282-282 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~96% identical to consensus. 15-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(804..983,970..2094,2034..2588)
FT                 /product="Transib-6_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MENVQYNIENNGYNFELNDXCKSIGYICKRIAAFWTR
FT                 YDRKKSSIVEYQYDWLNVKESIPRSQFLKSKSSSNRGRPMVDFEDSSSRTK
FT                 RRRIAQLMEMDESTVSALRNENQQQPLIQADPTEVISLIMETAMSKNQYLL
FT                 IRNFVNSKIAKXFDLFPSYQTIVNAKKQRYPKNISVDESHAEIELQSLLDS
FT                 TXSSILELQGDVVKTITDESIENLTLIGKWGFDGSTGHSEYNQRFSNNDSE
FT                 GKSLFVXSYVPLQLISRSSHSIIWKNPRPSSTRYCXAVRFQFKETTELSIE
FT                 EEKYFRKKIHQLKPTEFWMYNKKIIVEHSSQLTMVDGKVCNALSESFSLKC
FT                 FICGANPKEIXDLDKCLKKEVNKEYFEFGLSPLHAKIXFFEYFLHLSYKSV
FT                 IKMWQARGPEQKLKVLDQKLKIQAAFREKMGIMVDEAQRRRNSSGFSGKNG
FT                 NNGRRSPETEVEDRPTMEMWLGNFSPKLASEITGLNENLIHRCATILQAIA
FT                 SGYKINLDEFNDYAIDTAKELIREYPWYYLPATVHKVLVHGSSVIEHALVS
FT                 IGELSEEAAESNNKELKKCRLYHSRKMSRIATNTDILNTLILRSDPFITGQ
FT                 RKHGKKDKSMLLESVFNLLEET"
XX
SQ   Sequence 2934 BP; 1018 A; 488 C; 525 G; 891 T; 12 other;
     cacagtggtt ccgccagagg ccaaaaatca aaaaaccgat cagaaaatat ttaaactcaa        60
     tttacacagt ttgtctctaa aatgtccaaa ttttcaattt gcaaaccggt ttttgctgga       120
     aacctaacgg tacctcctaa aaatagaatc aaamgcggat gaacacgtgt tcatttcaac       180
     agcgcatcgc agctctgatg caatatttcg atgcaaaagc gcacttcaaa ttgggctggt       240
     aactaatcaa gtttataaat ttatattatt taaaatggat tttgaagccc aaggtattta       300
     ttttaattta tgaaattaat ttatactaat ttgatatgaa attaataaaa actaacttga       360
     tatgtgaaac ccttttgttt gtaccttttt tgagtgtctt aaatgtgttt acctaaagtt       420
     ttagttgtgt tcccacacga ttccacaaaa tatagtttta agattttaaa atcgttaaag       480
     ttaggtgcgg aaagttgcgg atgtatttgt aatcgctaat atgctaacac gacatcttat       540
     ttttttaagg tcaaattttt ccagcgcgcc gcagcggagc tcctgtgcac atctgtgtcg       600
     tcttttgtgt ctctgtgatt gtctaccgct tttatttgtc agttaattac ttttacatca       660
     aattctaata atttttccgt tttattaaaa tttttgtttg cattcccaaa ggagatgctt       720
     atcgttgtgt actttcacgg cagtatattt tcaatttatg gtgcaccaaa gatcgtagca       780
     acgctgcgaa attacaggaa gttatggaaa atgttcaata taatattgag aataacggct       840
     acaatttcga actcaacgac twttgtaaat cgattggcta tatatgtaaa aggattgctg       900
     ctttttggac tcggtacgat cggaaaaagt cgtcaattgt agaatatcaa tatgattggc       960
     taaatgtaaa ggagtcaatt ccttaagtcc aaaagttcat ctaatcgtgg tcgtccaatg      1020
     gttgattttg aggattcttc atctagaaca aagcgacgtc gtatagctca gcttatggaa      1080
     atggatgagt ccactgtttc tgctttgcgc aatgaaaatc agcaacagcc gttaatacaa      1140
     gcagatccca ctgaagtgat ttccctaata atggagaccg ccatgtccaa aaatcaatat      1200
     ttgcttataa gaaatttcgt gaatagcaaa atagcaaaaw ccttcgacct atttccaagc      1260
     taccaaacaa tagtaaatgc aaaaaaacaa agatatccaa aaaatatatc agtagatgaa      1320
     tctcatgctg aaattgagtt gcaaagttta ctggacagta cagmatcgag tatattggag      1380
     cttcaagggg atgttgttaa aacaatcacg gatgaatcca ttgaaaacct wacgttaatt      1440
     ggaaagtggg gttttgatgg aagtactggc catagtgaat acaatcaaag attttcaaat      1500
     aacgattcag agggcaagag cctatttgtc amatcatacg tacctctcca actaatttca      1560
     agaagtagcc attcaataat ttggaagaat ccgcggccct catcaacacg ttactgcagk      1620
     gcagttcgtt ttcagttcaa agagacaact gaactgtcaa ttgaagagga aaaatacttc      1680
     aggaaaaaaa tacaccaact caagcctaca gaattttgga tgtataataa aaagataatt      1740
     gttgagcata gttcacaatt aactatggta gatggaaagg tatgtaacgc tttaagtgag      1800
     tcattctctt tgaaatgttt tatatgtgga gcwaatccaa aagagatawa tgatttggat      1860
     aaatgtttaa agaaagaagt gaacaaagaa tatttcgaat tcggtttatc gccacttcat      1920
     gcgaaaatac kttttttcga atattttcta catctttcct ataagtccgt tataaaaatg      1980
     tggcaagcta gaggtccgga gcaaaaattg aaagttttag accaaaagct taaaattcaa      2040
     gcggcttttc gggaaaaaat gggaataatg gtagacgaag cccagagacg gaggtagagg      2100
     atcgtccaac gatggaaatg tggctaggaa atttttctcc caaattggct tctgaaatta      2160
     cagggcttaa tgaaaacctt atccatcgat gtgcaactat actccaagct attgcttcgg      2220
     ggtacaaaat aaatttggac gaatttaatg attatgccat cgatactgct aaggaactga      2280
     taagagaata tccatggtac tatttgccag ctacagtcca caaggtgtta gttcatggat      2340
     cttcagtgat tgagcatgca ctcgtatcaa tcggagagct ttccgaggaa gcagctgaat      2400
     caaataataa agagctaaaa aaatgtagac tgtatcacag ccgaaaaatg tctcggattg      2460
     caacaaacac agacatattg aacacactma ttttacggtc ggacccattt ataactggac      2520
     aaagaaaaca tggaaagaag gataaatcaa tgttacttga atctgtgttc aacttattag      2580
     aagaaacata aaaacataag tataataaaa cacaaaatag ttaatctttc ctatgacagc      2640
     catatgattt agttatccga ttctaataaa attkgctaag catatgtaaa actacaccaa      2700
     tcttatagtc tgagagttta gataacatat ctttaaaaat aaaaaaattt tcatactaaa      2760
     tttgtatttt taaccgatca ttcctatagc agctatatca tatagacgca cgatatggcc      2820
     aatttatata aaatatattt gtaatagttt tttataattt tggggaaaat tttgtaacaa      2880
     tacaacaact agaagtattt atggccgcgg ctccatacaa gccgaaccac tgtg            2934
//
ID   Transib-6_DBi repbase;    DNA;    INV; 2658 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-6_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2658
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 747-747 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 3'-truncated.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           941..2584
FT                 /product="Transib-6_DBi_1p"
FT                 /translation="MHFVLKAASTESVGQLKEKISKTDSSPISSEKALSFF
FT                 MENNLTKQQYQNIKKLNKQQGCDIYPPYSKIVEEKLKCRPDGIVCSENEAQ
FT                 VSLQNLLNHTASRILIMQEEVCETLTDITQCLLIFSYGFDGSTGHSLYKQK
FT                 FNITESPTLDDSLFVTSIIPIKMVDQAERVIWLNKSPQSTRFCRPLKISYI
FT                 KESTSLIINEKENLDTQIKNLNVYMHSYKNSEISVKFDGHLTLIDGKVLNI
FT                 LTGTKSCQSCPMCGAKPTQILEINDFYSKTFDMKPNTDQYGISPLHAWIRC
FT                 FEFILKLSYRIELKKXHVKGIDKDKLAARKQQIQNSFWKDMGLHVDKPRQN
FT                 GMGNSNDGNTARRAFPNSKQLSSILGVDHHLIHRLYIILIAINCNYPINSE
FT                 KFKLFCFETFTTCMSSYPWYPMSPTVHKILVHGYKIIQGSIVPVGSLGEGA
FT                 SEARHKLFKADRKHHARKSSRIDNMSDVFHRAMDSSDPLLSNLRITKGQNK
FT                 RKRLPAEVIYLFEEPILNEKDKDTSVSSSEDESDYDNESDCLEIYLEEEES
FT                 D"
XX
SQ   Sequence 2658 BP; 966 A; 460 C; 435 G; 794 T; 3 other;
     cactatagga aaaaagtcaa tttttttggc ataaaatcaa attawtttac aaattatttt        60
     taaaaataaa atatattttt tgaatttaca taccctaatt agccawgaac cgttatctaa       120
     gattttttac taacaacact atagtgttga taaacgaaca aagtcagctg ttcgattgac       180
     tttgttgtgt gcttaaatta gtgaaaaatc tttgcaaact ttcactgttt attttgtgga       240
     gcaacaaatt gatttattat ttctgattat ggcaaatcgt agcaaaggta tttataaatg       300
     tatcttagat tacatgtttt gattattatg acttgttgtc caactgtgaa ctgttttata       360
     tgtgtatctt tttagcttaa aactaacaag tttgtttgtg ttccgtggtg tataacttat       420
     aaatggcaca acgttgcaaa aaggtaaaaa cgcaaagtta ttaccaaatg tatccttaat       480
     atcgcaaaac taatcatttt tgcaactttt tgcacgtttc ttcaaaaaaa tgacttatgt       540
     ccagcaactt atgagcttcc acacgctgca cttctcgaag tttgggagaa aaacaggcgc       600
     tcggaagatg ctctaagaag ctacatacaa acacaacttt acggcgagca atttgatgaa       660
     actttaaatc agcaaatatc aaccaaaatt aaatgtttca ttggttatat taaaaaacat       720
     ttgccaaaat gctaccgtat aatggaccaa tttaagaaaa aacactcttt gtggctagcc       780
     ggcaatatga gtttaagcgt ttgtgctcaa aatatgtcat cgaataaacg aggtcgccaa       840
     aaataaatta gcatctgaac ttgcagaaga aaataacaat tcaagttctc ttttactcca       900
     cgctgccacc atttcggcaa gaaaatctaa tgaaaataac atgcattttg ttttaaaagc       960
     ggcttcaaca gaatctgttg gtcagttaaa agagaaaatt agcaaaactg attccagtcc      1020
     catatcttct gaaaaagccc tatccttttt tatggaaaat aatttaacta aacagcaata      1080
     tcaaaatatt aaaaaactaa ataaacaaca gggctgcgat atctacccac catattcgaa      1140
     aatagtggag gagaaattaa aatgtaggcc tgatggaata gtttgcagcg aaaatgaagc      1200
     tcaagtctcc ttacaaaact tgttgaacca taccgcttcc cgaatactaa tcatgcaaga      1260
     ggaagtctgt gaaacgctta cggatataac tcagtgctta cttattttca gctacggttt      1320
     tgatggttct acaggtcata gcttatacaa acaaaaattt aacataactg aatctccaac      1380
     tttagatgac tctctttttg tgacctcaat aatacccatt aaaatggtag atcaagcaga      1440
     aagagttatt tggctgaata aatctccgca atccacaaga ttttgccgtc ctctgaaaat      1500
     ttcgtatatt aaagaatcaa catctctcat aataaacgaa aaagaaaact tagacactca      1560
     aattaaaaat ctgaatgtct acatgcactc ttataagaac agcgaaatat cagtgaaatt      1620
     tgatggtcac ctaaccctaa tagacggcaa ggttttaaat atattaacag gaacgaaatc      1680
     ttgtcagtca tgtccaatgt gtggagcaaa accaactcaa attcttgaaa taaatgattt      1740
     ctattccaaa acatttgata tgaagccaaa tacggatcaa tatggaataa gcccccttca      1800
     tgcgtggata cgttgctttg aatttatact taaattatca tatagaatcg agctaaaaaa      1860
     gtgkcatgtc aaaggtatag acaaagacaa actggcggca cggaaacagc aaattcaaaa      1920
     ttcgttttgg aaagatatgg gacttcatgt agacaagccg aggcaaaatg gtatgggcaa      1980
     cagtaatgac ggaaacacgg cgagaagagc attccctaat tcaaaacaat tgtcttcgat      2040
     tttaggagta gaccaccatt tgattcatcg cctttacatt attttgattg ctataaattg      2100
     taattatccc ataaattctg aaaaattcaa attattttgt tttgaaactt tcaccacatg      2160
     tatgtcgagc tatccttggt accccatgtc tccgactgta cacaaaattt tagtacacgg      2220
     atataaaatc atacaaggat caatcgttcc agttggctct ttgggagaag gtgcatcgga      2280
     agcaaggcat aaattattta aagctgacag aaagcatcac gcaagaaaat ctagccgcat      2340
     tgacaatatg tctgatgtgt ttcacagggc tatggattcg tccgatcctt tactctctaa      2400
     tctccgcatc accaaaggac aaaacaaaag aaagcgtctt ccagcagagg ttatctatct      2460
     ttttgaggag ccaatattga atgaaaagga caaagatacc tccgtaagct cgtccgaaga      2520
     tgaatccgat tacgataatg aaagtgattg tttggaaata tatttagagg aagaggaatc      2580
     tgattaaact gtacattaat tataataaaa atataaaaaa aaaaaaatta taagtggctt      2640
     gcagcaattt taaaaatt                                                    2658
//
ID   Transib-6_DBp repbase;    DNA;    INV; 3007 BP.
XX
AC   .
XX
DT   08-MAY-2012 (Rel. 17.05, Created)
DT   08-MAY-2012 (Rel. 17.05, Last updated, Version 1)
XX
DE   Transib-type DNA transposon from the Drosophila bipectinata
DE   genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DBp.
XX
OS   Drosophila bipectinata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-3007
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila bipectinata genome.";
RL   Repbase Reports 12(5), 605-605 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. ~40bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           615..2630
FT                 /product="Transib-6_DBp_1p"
FT                 /translation="MAVRSFFERHSKNNVDKDILKEKSSQFCKIMRYKWNS
FT                 CRMNYKYFASKYGKWISSTTNLPTKKRNTSTGRPLIPFVSKGERAQRQEAA
FT                 ELSKSQNNEVLLLVQAASTAARKQGLHDLGAVLKILASTPEKATEVREFLT
FT                 KPIEQPIRASKDDALALILDQGFTKEQYCAFRDDVRKRKVDIYPLYKDVAK
FT                 QKKKCRPVNIDVSDTVAKVSMQSLLEHTVSRIVALQEDVIINVLANQQTNF
FT                 LSAELIVSYGFDGSTGQANYNQAYADKKQYDADSCLFATTITPLRMIDASG
FT                 NYLWNNRTPQSIRFCRPLKLEFLKETKESILKEKKDIEKEIEELMPCKISL
FT                 NDRQSVYVRFSPYFTAIDGKVLNALTETKSFQQCPICQANQNDFLGNKNFK
FT                 CLKFVPIMQNLKYGVSPLHSWLRFFEFVLHAGYKMELKKWRISDPSEKKQM
FT                 LERKAQIQKMFWERLSLKVDKPKQAGFGNTNTGNTARRAFTNYDDFSKITG
FT                 FDEQIIYNMRIILICLSCQLPVDLDKFESFCLQTGELIVDRYPWLPMTPTV
FT                 HKIIVHCRDIMENTVLPVGYFGEEASESRNKLYKSDRLHHSRKHSRLHSFA
FT                 DVFNRAMDTSDPIISSLNLSRRIKKQKSFPLPIEVIGMLACEYEDNVCVED
FT                 DEFDDSSLFFLDNIEIENEINEL"
XX
SQ   Sequence 3007 BP; 1003 A; 548 C; 600 G; 856 T; 0 other;
     cactatgggg tttttgacca ctttatgtgg catttaatca ttttttgaaa gttctctgat        60
     ttaaaaaaaa ttaatgggaa tgtattaaga aaacatcaaa ctattatgcc tcatactcaa       120
     aatgttaatt cttaacagca tattttagca gaacagctgc aaagtcagct gttgcatccg       180
     aaagcacgtg cgctaagttt gcaattttct catagtgatc tgtgaaattt gattattcgt       240
     ttaaaactcc atttaaaaag gaaaataata atggacactg atttcacagg tttgtactac       300
     atgttaaatg tattaactgt ttaaattgtg cgtgtctata ctaacttttt gtcattttat       360
     aaatgcacct taagctgaat tttgggaaac aaatttcaac tttgggaaga gttttgaaat       420
     agaagaattg gaaagttttc aatgcgtcca agtgtatgtt gtagcgttgt caatactgag       480
     caaaggctgt tagtcttatt gtgcactttt ccccactatt ggtgcaattt aaatttttct       540
     tagataacct cactttctcc aacgccgact tggtcgctgc ttggcacagc gcaaagggcc       600
     gggctgaaca agaaatggct gtacgaagtt tttttgaacg ccattcaaag aacaatgtgg       660
     ataaggacat tttaaaagaa aaaagcagcc aattttgcaa aataatgcgt tacaaatgga       720
     acagttgtcg aatgaattat aagtactttg caagtaagta cggaaaatgg ataagcagca       780
     caacaaattt acctacgaaa aagcgcaata cgagtactgg acgaccgctt attccatttg       840
     tgtcaaaagg cgaaagggct caaagacagg aagcagctga actatcaaaa tcccagaata       900
     atgaagtact tttgttagtc caagcagcaa gcacagccgc ccgaaagcaa ggcctacatg       960
     atctgggtgc tgttcttaaa atacttgcaa gtactccgga gaaagccacc gaagtcaggg      1020
     aatttttaac caagcccatt gagcaaccca tacgtgcgtc caaagatgat gcattagcgt      1080
     taatattgga tcaagggttt accaaagagc agtactgtgc gttccgggac gacgtgcgca      1140
     aaagaaaagt ggacatttac cccctctaca aggatgttgc aaagcaaaag aaaaaatgca      1200
     gaccagtgaa tattgacgtc tcggacacgg tagctaaggt ctccatgcaa agccttttag      1260
     aacatacggt ttcccgaatt gtggcactac aagaggatgt aattataaat gtgttggcca      1320
     accaacaaac taatttccta tctgctgagc tcatcgttag ctacggtttc gatggtagta      1380
     ctggacaggc aaattataac caggcatacg cagataaaaa acagtatgat gcagactcat      1440
     gcctgtttgc caccaccata acgcctcttc gaatgatcga cgcatccgga aattatttgt      1500
     ggaacaatcg cactccgcag tctatcaggt tctgtcgtcc cttaaagttg gagtttttga      1560
     aggaaactaa agaatctata ttaaaagaga aaaaggacat tgaaaaggaa atcgaagagc      1620
     taatgccatg taaaatatca ctaaatgaca gacaaagtgt gtatgtgaga tttagcccat      1680
     attttactgc cattgatggt aaagtactga acgctttgac agaaacgaag tcatttcagc      1740
     aatgcccaat atgccaagcc aaccaaaatg atttccttgg aaataagaat ttcaagtgcc      1800
     ttaaatttgt gccaataatg caaaatttaa aatacggagt aagcccactg catagctggt      1860
     tacgattttt tgagttcgtc ttgcatgccg gctataagat ggagctaaaa aaatggcgaa      1920
     tttctgatcc ttcggaaaag aaacagatgc tagaacgcaa ggcccaaatt cagaaaatgt      1980
     tttgggaaag actctcttta aaggtggata agcctaaaca ggcaggcttt ggtaatacga      2040
     atacgggaaa caccgcgcgc cgcgcattta ctaattacga tgatttctcg aaaataactg      2100
     ggttcgatga acaaattatt tataatatga ggatcatttt gatatgtttg tcctgtcagt      2160
     tgcccgtcga tttggacaaa ttcgaatcat tttgcctaca aactggagaa ttgatagtcg      2220
     ataggtatcc gtggctgccg atgacaccaa ccgtccacaa aataattgtg cactgcagag      2280
     atataatgga aaatacggtg cttccagttg gctattttgg agaagaagcg tctgagtcga      2340
     ggaacaagct ttataagtca gacaggcttc accactcacg aaagcacagc cgactgcatt      2400
     ccttcgctga tgtattcaat agggctatgg atacatcaga tccaattatt tcgtccctaa      2460
     acttatcgag acgcataaaa aaacaaaaga gttttccact accaattgag gtaattggga      2520
     tgcttgcgtg cgaatacgaa gataatgttt gtgttgaaga tgacgaattt gacgatagta      2580
     gcttgttttt tttagataat attgaaatag aaaatgaaat aaatgaatta taagataaat      2640
     acaactgtgt gaaggaattt ttctttttct ttttcagctt taataggcat ttgtatggaa      2700
     aaacactgaa atccagtatt ttaaactgac agttcccagg gaaagcgttg tccgatttgg      2760
     ttcaaaattg ccatatcgta ttaaaatagc aacaaatatc agctccttaa atttcattaa      2820
     tttatcttta cttttaccaa atcgttccta tgggagctat aggatatagt ttcctgatcc      2880
     gaacgatttt catactatat gtgcctagga tcaaataata acgattggta aagtttcatg      2940
     tcgatatctc caaaactgac cgagttatta attaatgcca caaaaacagg tcaaaaaccc      3000
     catagtg                                                                3007
//
ID   Transib-6_DEl repbase;    DNA;    INV; 3092 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-3092
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4039-4039 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1192..1344,1331..1750,1726..2286)
FT                 /product="Transib-6_DEl_1p"
FT                 /translation="MRLXSKDSGADIWPPYNNVREAKSACRPXKEXILVXE
FT                 XFAKAELQLXLKNYXSRIIEIQHESIAVYMXNNXMTDIEVXLMCSWGFDGS
FT                 SGHSAYKQSYQSLPTNEQIDDQNLFATTLVPLRLMTENNIILWNNESPQSV
FT                 RFCRPIALQFVKETRDLILKEKDYIQNKIDNLTVCKVPLYENHNIFVHYCF
FT                 FYFCSLLLFLTLIDGKVLNTITGTKSMQACPICQATPKTFNDISNKQKGIF
FT                 LPNINSLQYGLSPLHAWIRIFELCLHISYRLDVKVWQMRTELQRDSFRERK
FT                 KLIQARLWKELGLRVDKPKPGGSGTTNDGNTARRAFANPKLFAEILGLDSQ
FT                 LVCNLQTILIALSTKSPLDSDKFDQFATATAKMYI"
XX
SQ   Sequence 3092 BP; 1161 A; 480 C; 493 G; 926 T; 32 other;
     cacagtgggc cagaaaatcc aaaaagtggc aaaaaaccga tttcggaatt tcaaaaaagt        60
     agttagmtgt attaaaamcg gatatattga actagwattt gtcaaagttt camagcattt       120
     ggttacaaat tacaattttt acaaggaatt taaatagaaa atattgcttg aaactcagat       180
     aaatgtacct tgccttaaat acaaataaat ttttatttct atgtgataca aaactattta       240
     ttattttttt acaactaata atgttacgga aatcaaaaat aatagttttt tttcttcaaa       300
     aaagtcgaaa aaatattttt ttattatttt caatacaaag ttatacgatt ttcaatgttt       360
     gcgacacttc caaataggcg ttccccttcg ttcccctaga tatcaatatg tgaattactc       420
     ggaattattc cttgaaatgt gctgtttttg tttttcgttt taagaaagaa ataaataaaa       480
     amcctagcgc gcttccacat tttttgcaag cttgcgtata cacatttgtg caggaattta       540
     catgcgctkm ggcgtgctga atgctttctg caagcaaacc aactggtgac ggtgtggtga       600
     aatcgaactt tttaaatccg aaaagaamkt gwatkattcg aaaaatgata tcgaaccagt       660
     ctttgagtaw atttkaaaaa agttacattt tgatccaaat agctcatctc aagaagsaat       720
     gaaccgctta agagtgtctt taagaacttt aacatcaaaa tacmaagaaa gttggataaa       780
     gccaatagaa aacacgatcg ctttttatta aaaaacgaag actggatgaa wtctgttttt       840
     aatattcgaa ccgaaggatt cggattactt gaaaaaagta atgtaagtca tgcgggcctg       900
     gtcgtccaaa aatagaattc agttctagac agaatcgttc taagagatac gaaattgcaa       960
     atttgagtgc agaacacaac cataatgcag aaaaactatt gatggcttgt aggtatgcgg      1020
     caaaccgttc taagcaagta gacttaaatg tcattcttaa gaaaatatta aaaacacctg      1080
     aacagcctam maaaattcgg aaaccccaca taaagcaatt waaaaaaatc tgtggaagma      1140
     gccttagcat ttattttgga tggttctwtg tctaaggaat tgtatgtaaa aatgcgttta      1200
     gmctcaaaag attctggagc agacatttgg cctccatata ataatgtaag agaagctaaa      1260
     tctgcatgca ggccascaaa agaaamwatt ttagttamgg aaamctttgc caaagctgag      1320
     cttcaattga asctcaagaa ttattgaaat ccaacatgag tctatagctg tttatatgga      1380
     waacaacmag atgacagata ttgaagttsw tttaatgtgt tcatggggct ttgatggaag      1440
     ttccggccat tctgcttata aacaatcgta tcaaagttta ccaacaaatg agcaaataga      1500
     tgatcagaat ctattcgcta ctactcttgt gcctttgaga ttgatgactg aaaataatat      1560
     tatattgtgg aacaacgaat caccacaatc tgtaagattt tgtcgcccaa tagcattgca      1620
     atttgtaaaa gaaactcgag atcttattct gaaagaaaag gattatatcc aaaataaaat      1680
     agataatcta acagtttgta aagttccgct ctacgaaaac cataatattt ttgttcatta      1740
     ttgctttttt taacattgat agatggcaaa gtattaaata ctataactgg tacaaaatct      1800
     atgcaagcat gtccgatttg ccaggcaact ccaaagacat ttaatgatat ttcaaataag      1860
     caaaaaggca tttttttgcc aaatataaat tcacttcaat acggactcag cccacttcac      1920
     gcttggatca gaattttcga attatgtttg catatttcct atagacttga cgtgaaagtt      1980
     tggcaaatga gaactgaatt gcagagagat tcctttcgag aacgaaaaaa acttattcaa      2040
     gctagacttt ggaaagaatt gggactgaga gtagataaac cgaaacctgg tggctctgga      2100
     actacaaacg atggcaatac agcccgcaga gcttttgcaa atccaaaatt gtttgctgaa      2160
     atcttaggcc tagattcaca actagtttgt aacttacaaa ctattctaat agcactgtca      2220
     acaaaaagtc ctcttgactc cgataaattt gatcaatttg ctactgctac tgcaaaaatg      2280
     tatatttaaa tattatgaag catcagaggc tcgaaataaa gattataaaa attatagaca      2340
     atttttgagt agaaaacata gccgcataac aactttagaa gatgttttta atcgagctat      2400
     ggacacttct gatccgaaaa tatcctctat aaacctttct tcgcgtctca aacgcacaag      2460
     attattgtca ttacctaaag aggtaattga cttattataa gaggctgcaa ctgaaagtaa      2520
     atcttcagtt gaaaaagaag aagaagattt ctatgatgag gataaacata atatgtcaaa      2580
     tatactcaat gaactggatg aaattgagct ctcagaaaat gaagaaaatg aaaacatata      2640
     aaaaaatttt aaaaaattaa aaaaaaaaaa tttaaaaaaa aaatataaaa accaaaacaa      2700
     aaaaaaaacg ggatgttaaa tcggtttagg agccttctcg tggcacatcc tgagtgcttt      2760
     agcaaaagca gctaatccta agcgtaatat ataattataa aacaaaatta tcacaaatcc      2820
     tttttaaaaa tatataaatt gatataaaaa aattaaaaat aatgattaga agtaatttat      2880
     aacaagtttc aatgagaatt aatcagtttt tagaaaagtc atcatattca gtccgccatt      2940
     ttgagtccgc cattttgaat tttgaaaatc caatttcaga ttcggaatca gcgaccccaa      3000
     gaacataaga taacatacta aaagttttaa atctattgat aatttgggag ttattaattt      3060
     ttgccacttt tttccaatcc tggcccacag tg                                    3092
//
ID   Transib-6_DK repbase;    DNA;    INV; 1805 BP.
XX
AC   .
XX
DT   22-JUN-2012 (Rel. 17.07, Created)
DT   22-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila kikkawai genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DK.
XX
OS   Drosophila kikkawai
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; montium subgroup.
XX
RN   [1]
RP   1-1805
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila kikkawai genome.";
RL   Repbase Reports 12(7), 1222-1222 (2012).
XX
DR   [1] (Consensus)
XX
CC   >99% identical to consensus. 38-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
FH   Key           Location/Qualifiers
FT   CDS           526..1455
FT                 /product="Transib-6_DK_1p"
FT                 /translation="MKYCFLTDNIDLSYAEMVEVWLANGRENKSIYDFVLQ
FT                 HIIKTVKEHIKNPIDNKIANFVAALKTRLNNCKRDVSRLKKKHENWLALRF
FT                 KIKLLPSDFMEXAPKNAGRPRLNYDAGSCRLKQRLAADLSSKNNNDVNLLA
FT                 HAANLAAKKARLTVEEVSSKAEPVPFTPEEALDFLIENGFTKKQYMSIRLQ
FT                 SKCXNCDIYPSYKKIIAAKDKCRPKGINITESVASVSLQNMLNHTVERILQ
FT                 LQKDIFDVYPNICNMKLIASYGFDGSTGQSLYKQYFEDCIPDTFDDLMMHM
FT                 MMEMTWTQLNLLMTILLI"
XX
SQ   Sequence 1805 BP; 621 A; 277 C; 317 G; 588 T; 2 other;
     tgcacactgg tcccaaagtc caaaatttgt gcaagaatcc aatttttttt ttaagagttg        60
     ggcgaaaaca atattttatt gcgatagagt aatattcagg gcaattgaaa ataatagagt       120
     ttcaattgaa attgcatccc tgcgatcgct ggcagccctg gaaatcagct aatcgtttac       180
     cgcaaacttt ggcattgctt tctcgcgaaa ttaatgcaaa gtttgaaaac aaattgtgta       240
     aaatctaata tctcgattgc tataattcaa aatggatgat aattgtgcag gtatgtgaaa       300
     tattatgtaa tattgcaata tttgttatat gtgtaatttc tttattaata tgtgtttttg       360
     tgatgttatg tgttttaaca attctaacct aacttttgtc gtgttccgtg gaataaaggt       420
     atatagtatt taatcgtatt taagaaacta ttgatacaga tgttatcttt aacatataca       480
     ttttttgatt aaactaattt tttttgcccg tttttgcccg attccatgaa atattgtttt       540
     ttgacagaca acatcgattt gagctatgct gaaatggtag aggtttggct ggcaaatggt       600
     cgtgaaaata aaagtattta tgattttgtg ctgcagcata ttattaaaac agtaaaggaa       660
     catataaaga accccataga caataaaata gcaaactttg ttgctgcatt aaaaacacgg       720
     ttaaacaatt gtaagcggga tgtttcaaga cttaagaaga agcatgaaaa ttggctcgca       780
     ttacgtttca aaatcaaatt attaccatct gattttatgg aagwggcccc caaaaatgca       840
     ggacgcccac gactaaacta tgatgcagga agttgccgat taaagcaaag attagctgcc       900
     gatctttcat ctaaaaataa taacgacgtt aatcttcttg ctcatgcagc aaacttggct       960
     gcaaaaaagg cgcgattgac cgttgaggaa gtatcttcca aagcagagcc tgtacctttc      1020
     actccagaag aagccttaga ctttttaatt gaaaacggct ttacaaaaaa acagtatatg      1080
     agcataaggc tgcaaagtaa atgcwggaat tgcgacattt atccgagcta caaaaaaatt      1140
     atcgctgcaa aagataagtg caggcctaaa ggaataaata ttacggagtc tgtcgcttct      1200
     gtttcactac aaaacatgct taatcacact gtcgaacgta tattacaatt acaaaaagac      1260
     atatttgacg tttatccaaa tatttgtaat atgaaattaa ttgccagtta tggatttgac      1320
     ggttcaactg gccaaagttt gtacaaacaa tattttgaag attgtatacc agatacattt      1380
     gatgatttga tgatgcacat gatgatggag atgacttgga cacaactgaa tttactaatg      1440
     actattcttt tgatttagat gtagaaaatg attaatttaa taaatatatg tgataaaaaa      1500
     ataaataaaa ttagccgaaa actttcctca ttttctattt tagttatttt ttcattttaa      1560
     atatttattt tctgataaga aactaaaatc taagccatgt aaaactgaaa gcaatatcaa      1620
     ttgacaaacg gacgtatgag taattttgtt gtttataagg ggaggtaagg aaggcgtggc      1680
     ccgatcgcaa acaatttttg cacaggcttt ttatatccaa caaccattaa ctgtaccaag      1740
     tttcaagcgt atatctccat ttttctaatt actgcacaaa ttttggactt tgggaccagt      1800
     gtgca                                                                  1805
//
ID   Transib-6_DRh repbase;    DNA;    INV; 1866 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1866
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1423-1423 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. Both termini are uncertain.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1866 BP; 636 A; 330 C; 367 G; 533 T; 0 other;
     tttgttgtca tggaaaactt tgtatttggt actgttgtga aaaaccttaa atatactctg        60
     gaagagcagt gcgagattgg caaaaagttt gcgaaatttt actagtaggc ttatagtaaa       120
     gtggaaagac tgtggaagaa ataaggattt tttcgaaacc aaaaaccagg aatggctaga       180
     tacgccgctg gtattaatgg aaatctcatc ttcaaaaaat gttggacgtc cacaaaaaga       240
     ttttgcggat tgttgcaaaa aacgcaagtc aacaaattgt cagacctaac tgaagatgtc       300
     ccatcagatg cattgttggt agctgcaagc tgcagcttgt ataaagctgg aaaacgcagt       360
     gcttcacagt tggtttcaat ggtaaacgcc gacgaagagt ttagcggtaa tataatgaaa       420
     actatgacta ccccacagcg tctaccgtca aaattttctg atgaaaaagc actggcccta       480
     tttgtagatg ttggacatac caagtacaca tggaatttgt caaagagagc cgccaaagga       540
     caaaacgctg atatatatcc atgctacgat aaactgcgtt gtgcgaaaaa aaatgctatc       600
     ccagtgtcat cacggtcact gatcatttcg ctgaagtagc actacaaagc ttagtggacc       660
     atacgattgc taggactatt gaagcacacc cagaaagttt tccaacccat attgaaaaca       720
     ataataacac ccaattaact gctacataca aatggggcag gcaaaaattt gatgactttg       780
     atggaaacat gatagatcaa tatttatttt caatttgtat ggcgccatta acagtgcaga       840
     acggaccgat agttttatgg aaaaacaata gaccttcttc tactcgatat tgtcgaccct       900
     tgaaagaatc ggcagactta attcgcggag aaagtgaaaa tattaaaagc caaatatcaa       960
     atattttacc aacattagtg agtggcttta gaattgatca ccaatttcat atgaccatgc      1020
     ttgatggcaa aacgttcagt gtcatatcgg aatcttcttg ttgaagaaaa taaaagaatt      1080
     attcagcaga agctgaggga agaaatgcat ttgctggtag atataccaat tgctactgct      1140
     ggcagtacga acaacggaaa cactgcaagg aggtttttcg aacaaccaaa tttggctgct      1200
     cgtataacag gagtaagcta tgatttaata catcgattca gtgtagtctt acgagcactg      1260
     gcatgttgcc acgaaataaa ttcggaggca ttccggtctt acgcattgga aactgccgaa      1320
     ttgtttgtga aatcatatcc ctggttttat atgccatcgt ctgttcacag aattttaatt      1380
     catggagcag acattataag ccatttttgc cttccaattg gtatgatgtc cgaggaagct      1440
     cttgaagcca ggaacaagga cttccgaaac gtacgcgaga gcaatacaag aaaaaattgc      1500
     aggaaaaata ccatggaaga tgtgttaaat gccttattag tttcttccga ccctttgata      1560
     acttcattgt caaatgggtc tgcaatttct tctacaaaaa caattattat ggacgatgat      1620
     gttaagagtt tgcttctaat aaagcatctg gatatgcctc tctctgattc cgaatcagcc      1680
     ttttttagat aaagtttatt tatgaaatat gttaattaaa ttaaaaaaat aaaaaaaaaa      1740
     tgttttttta cttaaaaaat tctatgattt ttctctgatc agtggaaaaa aaccgactga      1800
     agacatctat tttagtttag aagttattaa ttaaatgccg ctagcgagac caaatcgccc      1860
     actgtg                                                                 1866
//
ID   Transib-6_DSuz repbase;    DNA;    INV; 3014 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   21-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3014
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 118-118 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~100% identical to consensus. 5-bp TSDs. 38-bp TIRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           557..2599
FT                 /product="Transib-6_DSuz_1p"
FT                 /translation="MSHAEMLEFWLANNRQTEGLANFVLQQSHRKLNQIME
FT                 ESIRKKIKNFVAYVNFHLNKCNRMVTRFKTKHQSWLSSRMQLQLKACNFVD
FT                 ESAKTVGRPRLCYDDGSSRLKRKLAAEVSADNGNNANLLVHAAAVAAKKAH
FT                 LKNVEEEKKEAKRVPYTPEEALDFLIENSFTKRQYMNIRQHSKNRNCDIYP
FT                 SYNKVIAAKEKCRPKGICITESVASVPLQNLLKHIVERIMLLQSEVLNIYA
FT                 DISEMKLIASYGFDGSTGQSLYKQNFVLDASDTLDQSLFVTTLIPLKLVDS
FT                 IGRVIWMNRSPQSVRFCRPLKIEFVKETKTHILKEKANLDLEIQNLLPMVY
FT                 EDANKQSYTISFELKMTLIDGKVLNILTGTNSTQSCPICGAKPMQFMTITD
FT                 LESDNFIPKSPQALEYGVSPLHAWIRFFEFVLKIGYRIGINKWQVRGPEDK
FT                 EKMSARKVEIQGKLWAVLGLHVDKPKANGSGSTNDGNTARKAFLNTDTFAS
FT                 ILGFDPEVLRDFYIILITISCNFEIDVQKFKNFCKKAGSLYMEKYPWYPMS
FT                 ATVHKVLAHGAQIIAASSLPLGCLAENASEARNKFYKKDRRSHARQNSRIN
FT                 TMTDVFCRALDSSDPLVSSIYIQQRLLQNKKHTYPAEVLELLRAPNVNFLF
FT                 NNVNADDDDKEDDLDTSECIDIYSFDLDVEND"
XX
SQ   Sequence 3014 BP; 1009 A; 496 C; 590 G; 919 T; 0 other;
     cacactggtc caaatgccaa aaattttggc agaaattcaa attttttttt taagagtttt        60
     gcaaaaataa tattttattg caatagaata ttaactaggg cagttaaaaa gcatagtcgt       120
     attgttgaaa tcgaagcact gcaaatttgt gcagccctgg aagtcagctg atcatttacc       180
     acaaactttg attgtgaatg ctttgcaaat aagagcacat ttgaaactgg tgtattttgt       240
     gttattcctc gaatatttaa tcaaattaaa atggaaaacg aagttgaagg tatttataat       300
     ataattgtta tcacgcaata cttgttttat gtggtgtgtc tttgtttata tgtgttttta       360
     taaagtgatg tttttagcga ttctaacctc aaacttgttg tgtttcgtgg aataaaagta       420
     tgttggattg tcgtggattg tcgtaactat taacaccatg tggttcttca atatgtatat       480
     aatacgagga tattaatctt attgacccgt ttttgcccgt tttcctgaaa attgactttt       540
     tccagacaac attgacatga gtcacgctga aatgcttgaa ttttggctag caaataatcg       600
     gcaaaccgaa ggcctcgcta attttgtgct gcagcaaagt cacaggaagc ttaaccaaat       660
     catggaggag tcaattcgaa agaaaattaa gaactttgtt gcttatgtaa attttcattt       720
     aaacaaatgt aatcgaatgg ttacaagatt taaaacgaaa catcaaagtt ggctttcatc       780
     acgtatgcaa ctacaattaa aagcatgtaa ctttgttgat gaatccgcca aaactgttgg       840
     acgtccacgg ttatgctacg acgatggtag ttctcgctta aagcgcaaat tagcagcaga       900
     ggtttcggca gacaatggca ataatgcaaa tcttcttgtc catgctgcag cggtcgctgc       960
     aaagaaggcg catttaaaaa acgtggaaga agaaaaaaag gaagctaaac gtgtacctta      1020
     tactccagaa gaagccttag attttctaat agaaaacagc tttactaaaa gacaatatat      1080
     gaacataaga caacatagca aaaaccggaa ttgcgacatt tatccgagct acaataaagt      1140
     gattgcagca aaagaaaaat gtagacctaa aggaatatgt attacagagt cagtcgcgtc      1200
     tgttccttta caaaacttgt tgaagcacat agtcgaacgc ataatgttgt tacaaagcga      1260
     agtgcttaat atatatgctg atatttctga aatgaaacta attgctagtt atggatttga      1320
     cggttcgact gggcaaagtc tctataaaca aaatttcgta ttggatgcat ctgacacgtt      1380
     ggatcagtct ttgtttgtaa caaccctaat cccgctaaaa ttagttgatt cgataggtcg      1440
     agttatttgg atgaaccgct ctccgcagtc tgtgcgattt tgcaggcctc ttaaaattga      1500
     gttcgttaaa gaaacaaaga ctcatatatt aaaagagaaa gcaaacttgg acttggaaat      1560
     tcaaaattta ttgccgatgg tatatgaaga tgcgaacaaa caaagctata ccataagttt      1620
     tgagctgaaa atgactttaa ttgacggaaa agtcctgaat atcttaactg gaactaattc      1680
     aacccagtct tgcccaatct gtggagctaa gcctatgcaa tttatgacaa taactgatct      1740
     ggagtcggat aactttattc caaaaagccc acaagcgcta gaatacggag taagtcctct      1800
     acacgcgtgg attcggtttt tcgaatttgt tcttaaaatt ggatatagga ttggtatcaa      1860
     taaatggcaa gtacgtggcc ctgaagacaa agaaaaaatg tctgcgcgga aagtggaaat      1920
     tcaaggcaaa ttatgggcgg ttcttggact tcatgtcgat aagcccaagg caaacggaag      1980
     cggcagtaca aacgatggga acacagcaag aaaagcattt ttgaataccg acacatttgc      2040
     gtcaatactt ggcttcgacc cggaggtttt aagagacttc tatattatat taatcaccat      2100
     ttcatgcaac ttcgaaattg atgttcaaaa atttaaaaat ttctgtaaaa aagctggctc      2160
     tttatacatg gaaaagtatc cttggtaccc aatgtcagct acggtacata aagtacttgc      2220
     tcatggtgct cagatcatag ccgcatcctc ccttccactt ggttgcctag ctgaaaatgc      2280
     atcggaagcc cgaaataagt tttataaaaa agatagacgt tcacatgcaa gacaaaatag      2340
     tcgtataaat accatgacag acgttttttg ccgagcgcta gattcatcgg atcccctggt      2400
     ttccagcatt tatattcaac aaaggctgtt gcaaaataaa aaacacactt atccagcaga      2460
     agttcttgag cttttaagag ctccaaatgt aaatttccta tttaataatg tcaatgcaga      2520
     tgatgacgat aaggaagatg acttggacac atctgaatgt atcgatatat attctttcga      2580
     tttagatgtg gaaaatgatt aacaaaataa taaaaaaaaa atcatattaa aaaatgcctt      2640
     actaaaagaa ataacatata tgtatattaa ttgatgtttt acatattttt tttttgggaa      2700
     gctaaatatt tttgggggtg ggagtctggt gggagagtgg taaggggtgg gagaaatgaa      2760
     ttgtcagatt gtttattcaa aaagttatat atacgttcaa gttttgttgg acaatgtacc      2820
     ggatttaaat atactcgaat ttatagtttt caaggacatt aacttatatg gggcggcgta      2880
     gagggcgtgg tccaatcgga ctaaactttt tctcaggctt aacatatact atgacaatat      2940
     tgcctaccaa gtttcaggtc tgtaactcct tttttcgaat ttctgccaaa atttttggca      3000
     tttggaccag tgtg                                                        3014
//
ID   Transib-6_DTa repbase;    DNA;    INV; 3664 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. partial
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3664
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6230-6230 (2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. 98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1126..3249
FT                 /product="Transib-6_DTa_1p"
FT                 /translation="VNCRRFDCVCQCTCVYYTLLTKFSRFLVSFLKILAED
FT                 AKEHFFSHLELYKIWKEQRHLSDSEQLDLLFKCIQRRVDPSSELIPDYKTK
FT                 ITRFLRELQLRWKKSRRLAPQFLKANDNWLNSSIVFKRAAQKKRGRQEVAF
FT                 ESCNIRSKYKKTMELRSNSLPMLSFATETKLKEAGNVEASKFVAELANSSP
FT                 TRSKSLRKLVDNARTVTKIPKEKALALFINASLTRHQYNLIRVSAPERFPS
FT                 YTTIQHAKRDCYPLENSIKITEISAEVTLQGLLDHTSLRLVLLNEQMIPSL
FT                 SDEDCKLFRLYSKWGFDGSSSHTPYKQSFASPDASDANVLITSLVPLKLSS
FT                 QGQTIWQNPRPSSTRFCRPLKIEFIKENSAISNQEHGRVINEIKHLKSSFV
FT                 EIGDRTIEVSHETILSMIDGKVCNALTETTSTQRCYICGCTSKEFNKIDHM
FT                 IKVPTKTENLQFGLSILHGWIRFFECLLHLSYKLTIKKWQVRNPEDKKIVA
FT                 DRKAQIQKDFRNQMGLIVDQPKPGCGNFNDGNTARRFFKNAELSAKITNID
FT                 LQLIKRMHTILIAVSSGKEIDVIKFRFFAHQTAYLFVERYPWYYMPPTLHK
FT                 FFIHGPEIIEHALLPIGQLSEEAQEAKNKDFKKYREQFSRKISREKQNEDV
FT                 FKRLLISSDPIITSISDLHKEKTTKIPKEALDLLKPAEEDSDTDEGADRDE
FT                 DTDTDTDC"
XX
SQ   Sequence 3664 BP; 1270 A; 621 C; 605 G; 1166 T; 2 other;
     cacagtgggg taacagaggc cgattttgcg aattaatgtt aaaatcaaat ctcaaaaatc        60
     tctaaaagta atgatggcag tttatggtac attgaatgac ctttcataat ctaaaactca       120
     aatcgcattt agttttatca gactagagtt atcctttctc aaagttacac tttgattcac       180
     atttcatcaa gactatccaa attgtacttt ttcttcattt ttaaaaaaat attaaactaa       240
     cattctttaa tgtaccaaaa aactgaaaat gccattgttt tcttttaaat gttaactaat       300
     ttttcattta aaaacaaaaa tttagaattc atatattata tttttaataa atatttttca       360
     tacaccttaa atttaacctg attctgagaa atctttaaag atttctcaaa agagccgggt       420
     ttcgccgttt tcatatttta ctgaaaattt ctctgatata taaactttca aatgtgcaaa       480
     aatagaggtg ctgttttgtg ctttttttga gaaaagttaa taacagtaac ctaacctcaa       540
     aaattaaaaa tttttcagaa acggttttat tagtacgttt gcctttcctg ggcatatttt       600
     aaggaagtaa aatacacttt tactaacttt aaggcagcag agttggaatc ttttgttcct       660
     ttacctctat cgtttatagg takggagata tcttcacatt tgtaagccaa aagatgcgct       720
     tactctttta gcttctgagg gtgaattaat tgaccaatcc gaatcaaatt tggctctaaa       780
     cgcatataaa acaattggat aaaatggaaa aagaccttta aggttaacag tcagaccaaa       840
     tcgtgagaat tgttattcga ttttcaataa aattgttcga taaaaaaaat atggcgctgc       900
     agtgcatcga taaaaacaaa gcttctttgc gttttcttct ccttcggatg gtgacttgtt       960
     gttttcgtgt acattttata attatacttt tgtttcaatg gattcacatg taaaaggtat      1020
     gttatttgtg ttaattagtt gtgttagttg tgtagcccac cttcatgtgt tccgtcacag      1080
     tgtttaatgt ttttaatgtg tactagtaaa attctacgta gttgagtgaa ttgtcgcagg      1140
     tttgattgtg tttgtcaatg tacgtgtgtt tattacacat tgttaaccaa attttcccgt      1200
     tttttggtat cattcttaaa aatattagca gaagacgcaa aagagcattt cttctctcat      1260
     ctcgagctgt ataaaatctg gaaagaacaa cgccacttga gtgattcaga gcagttggat      1320
     ttgctattta aatgcataca gagacgagta gatcctagca gtgaattaat ccccgattat      1380
     aaaacaaaaa tcacacgatt cctaagagag ctacagctaa ggtggaaaaa gtcacgcagg      1440
     ttagcgcccc aattcctgaa ggccaatgat aattggctaa actcttcaat tgtatttaaa      1500
     agagctgcgc aaaagaaacg aggtcgtcaa gaagttgctt ttgaaagttg taacattcgc      1560
     tcaaaataca aaaaaactat ggaattaagg agcaactcct tacctatgct ttcatttgcg      1620
     acagaaacga aattaaaaga agctggtaat gtggaagctt ctaagtttgt tgccgagctt      1680
     gcgaattcat cacccacaag atccaaatcc ttacgaaaat tagtagacaa tgctagaact      1740
     gtgacaaaaa ttccaaaaga aaaggcttta gcacttttta taaatgctag tctaacaaga      1800
     catcaataca atcttattag agtttcggcc ccagaaagat ttccgtctta tacaacaatt      1860
     caacatgcca aacgagattg ctacccactc gaaaactcaa taaaaattac tgaaatttca      1920
     gcggaggtta ctctacaagg gcttcttgac cacacctctt tgaggttggt attactgaat      1980
     gagcaaatga tcccatcttt atcagatgag gattgcaagc tctttcgttt gtatagcaag      2040
     tggggttttg atggtagctc aagtcataca ccatacaagc aatcatttgc ttctcctgat      2100
     gcctcagatg ctaatgtact tataacatca cttgtgccct tgaaattatc aagtcagggt      2160
     caaacaatct ggcaaaaccc tcgaccttcc tctactagat tctgtcgacc tttaaaaatt      2220
     gagtttatca aagaaaattc cgctatttca aaccaggaac atggaagggt gattaacgaa      2280
     attaaacacc taaaaagctc atttgtcgag atcggagaca gaaccataga agtttctcat      2340
     gaaacaatcc tgtcaatgat agatggtaaa gtgtgtaacg ctttgacgga aacgacttcc      2400
     acccaaaggt gctatatatg tggctgtaca agtaaagaat tcaataagat tgatcatatg      2460
     attaaagttc ccacaaaaac cgaaaattta caatttggcc tatcaattct tcacggctgg      2520
     atccgtttct ttgaatgcct tcttcatcta tcctacaagt tgacaattaa gaagtggcaa      2580
     gttaggaacc ctgaagataa gaaaattgtt gctgacagaa aagctcaaat tcaaaaagat      2640
     tttaggaatc agatgggact tatagtggat caacccaagc caggttgcgg aaattttaat      2700
     gacggcaata cagctcgaag gttttttaaa aacgctgaac tttctgctaa gataactaat      2760
     atagacttac aactgattaa aagaatgcat actatattga ttgcagtgtc atctggcaag      2820
     gaaatagatg ttatcaagtt tcgtttcttt gcacatcaga cagcttatct ttttgtagag      2880
     agatacccat ggtattatat gcctcctacc ttgcataaat tttttattca tggcccagaa      2940
     attattgagc acgctttgct tccaattggc caactttcag aagaggcgca agaagcaaaa      3000
     aacaaggatt ttaaaaaata tcgggaacaa ttttctcgaa aaatcagtcg agaaaaacaa      3060
     aacgaagacg tttttaaaag gctactcata agttctgatc caataataac ctctatatcg      3120
     gatttacaca aggagaaaac cactaaaata cctaaagagg ctcttgactt attgaagccc      3180
     gcagaagaag attcagatac agacgaaggt gcagataggg acgaagatac agatacggac      3240
     acagattgtt aagactgttt aataatttta gtgttaataa agtattataa aaaaaacata      3300
     cacaaaaaaa aacccaaatt tttggtcaaa aaactttttt gcgcctaaat atcaatcgaa      3360
     aatggttgga caacataaga aatgttttta tttaatattt aagatattaa caattaccta      3420
     aaataataat ataaaacaaw tttactgcaa atgcattgag acacacgaaa ataacagaat      3480
     aacatagttt tcgtctattt cactaaaatt aaaaattaat tttaaatact aaaaaaaata      3540
     tttttttagt aaatccgttt tttttttata agtgatttaa acttgtttta aaaaattttt      3600
     tttgggcatc gtatcatgct tggttgattt gattcgcact tttggcctct gttaccccac      3660
     tgtg                                                                   3664
//
ID   Transib-7_AAe repbase;    DNA;    INV; 3778 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3778
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1308-1308 (2011).
XX
DR   [2] (Consensus)
XX
CC   There are 3 copies >94% identical to consensus. TIRs are ~720
CC   bp
CC   long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(963..1646,1655..2545,2490..3056)
FT                 /product="Transib-7_AAe_1p"
FT                 /translation="ISERTISCRELVDLFLSGKSVGESVEVLKQKIQIDGS
FT                 TLDIPSALRTLRLFKLKFVSNFNKCYRKKPIFLEKCSKWLDSVVGFKIASS
FT                 KSSRHVGRPKKSFEDSSRKTKIRKIKSIRRRIPSEKLILAAASSQRAAGNR
FT                 DLAWVIEHLVGHPEKASSVRKFLEMENLETNPRPLSINDALTFLCHNDLSK
FT                 LQYQNIRMLSLERGANIYPTYNELREGKSLCYPEGTSTKHLLTHNIYFICT
FT                 FIGMTICPSTAEVPLQLLTDHTIQRLFVSREDNVAPYLERTGKFSVIFKWG
FT                 CDGSSNHSKYKMPFMEEIEGEQRWINDSHIFLMCIVPLRIVFHDDNSNKDY
FT                 VVWNNDLPSSINLCRPLKMVFQKENAALTKTEVANVNYQISQLTPTVLLLQ
FT                 NRQVAVESVLCMTMIDGKVLNDLTNTSSQACHLCGASGKALSNPPVVPITD
FT                 EPTDFEIMPILHAYMRSMELLLNISYRIPLKKWRISKGNEVLKERQQTIRG
FT                 KSRYGMFVELTLHILLLFRKIQANGSTDKHYIYYYYLGKFKLMGLRISEPL
FT                 PSGGNSNDGNTARKFFENPSKTAEITGLDEDIIRMFSNILRALFSKISVNA
FT                 TAYHAYAEQTRLRLTRLYPFYPLSPSVHRMLVHGASIIKHCILPIGMMSEE
FT                 VQERGNKSIRYFREHHSRKCGRQANIEDVFKRLMLTSDPVISLNGKLXKSV
FT                 PNEYPEEIRNLLIL"
XX
SQ   Sequence 3778 BP; 1255 A; 676 C; 715 G; 1125 T; 7 other;
     cactatgggc cacggacgca atctggcggg acaaaattaa taactcgtca acaaagcatt        60
     tccggcattt ggtgtcttcg gcaaagtttt ttgtaacaac gaggaccatc tactgacctt       120
     aacggatagt tcgaaaatcg tccgcagagg tggcgccaca atctaacttt ttactttgac       180
     gtcctagagt cttggcgtgt tcgacaaagt tgttcatttt gataaaataa acaactctct       240
     cgaagacgtc aaaattccac agcctactgt ttttgagtta ttggcaaaat aagaccaaat       300
     taacaaaaaa acgttttttt caccaaatct gacatttttc ttaagaatta tgtcaaatta       360
     tattatttkc taatgtaaac ataaaaaaca caaactatag tatataattt tttacagtat       420
     gacgcataam aattaaaaaa tagcgaaaaa acctgaaaaa twgtgcagtt tttaaacatt       480
     aatatmtcaa aaagcgcaaa aaatcgcaag ctcaaatttt caggcaacat agaacaatgc       540
     tagatgaaac ggatgtcaaa atttgagaaa ggtatatttt ggtgtttttg agatattttc       600
     atttttttac aatgattatt aacgaattat ggaacagact tttatgaaaa attattcaaa       660
     aaggccatcg tagtagccat gaaattcagt ttaagtgcgg ttccttgagt caatatcaag       720
     taatggagca tcaaaacatt gaggtgtaac tgtacacagt tctgttgagt gtaaattgaa       780
     aattgaacat ttatgtttta ctctaatgat acaaaatata tagtgtgcca tgaacatttt       840
     gatcaagtgt cagttaatta ttgtcataat ggctcagggt gagtaattta atttatgaat       900
     ttgttatttc tactacaaaa gatcaaatta ttaagcatat ccatgtcgat aactcaactt       960
     aaatttcaga gcgcaccatc tcttgccggg agcttgttga tttgtttttg agcggaaaga      1020
     gcgttggtga atccgtggaa gttttgaaac agaagattca aatcgatggc agcacattgg      1080
     acattccttc ggctttgaga acattaaggt tgttcaagct gaaatttgtg tctaacttca      1140
     acaaatgcta tagaaaaaag cctatatttc tcgaaaaatg ttcaaaatgg ctcgattccg      1200
     tcgtcggctt caaaattgca tcaagtaaat catcgcgaca cgtaggacga ccaaagaaaa      1260
     gcttcgaaga tagtagcaga aagacgaaga ttagaaaaat taaaagtatt cggcggcgta      1320
     taccatcgga gaagctaatt ctagcagcag cgagctctca acgagcagcc ggaaacagag      1380
     atttggcgtg ggtaattgag catctcgttg gtcatccaga aaaagcatca tcagtgcgca      1440
     agtttctcga aatggaaaat ttagagacta acccacgccc tttgtcgatc aatgatgcac      1500
     taacatttct ctgccataac gatctatcaa aacttcaata tcaaaatatc aggatgctat      1560
     cactagaacg aggtgctaat atctacccga cttacaacga gctccgtgaa ggaaaatcat      1620
     tgtgctatcc ggaaggtacg tcaacataaa atgaaaacat ttgttgactc ataatattta      1680
     ttttatatgt acatttatag gtatgactat ttgtccatct actgctgaag ttcccttaca      1740
     attactaaca gaccacacca tacaacggtt atttgtttca cgggaagata atgtagcacc      1800
     atacctcgag cggactggga agttttccgt aattttcaag tggggttgtg atgggtctag      1860
     caatcactcg aaatataaaa tgccctttat ggaagaaata gaaggggaac agcggtggat      1920
     caatgatagc catatatttc tcatgtgcat tgtaccactt agaattgtgt tccacgacga      1980
     taattctaat aaggattatg ttgtatggaa caatgactta ccatcctcca tcaacttgtg      2040
     tcggcctttg aaaatggtgt tccaaaagga gaatgcagct ttgacaaaaa ctgaggtagc      2100
     aaacgttaat tatcaaattt cacagctaac tccgacagtt cttctgttgc aaaatcgtca      2160
     agtagctgtg gaatctgtgt tatgcatgac catgattgat ggcaaagtat tgaacgatct      2220
     gacaaatacc agctctcagg catgtcatct gtgcggcgct tcagggaaag cactaagcaa      2280
     ccctcccgta gtgccaatta cagacgaacc cactgatttc gaaattatgc ccatactcca      2340
     cgcgtatatg agaagcatgg aattgctcct caacatctca tatcgaattc cattgaaaaa      2400
     atggcgaata agcaagggaa acgaagtgct aaaggaaagg cagcaaacga tccgaggtaa      2460
     atcaagatat ggtatgtttg ttgaattgac actacatata ttattattat ttaggaaaat      2520
     tcaagctaat gggtctacgg ataagtgagc ctttgccatc gggtggaaat tcaaacgatg      2580
     ggaacaccgc acgaaaattt tttgaaaatc cttcaaaaac ggctgagatt acagggctgg      2640
     atgaggacat catacgaatg ttttcgaaca ttctaagggc tctgttttcg aaaatatcag      2700
     ttaacgctac tgcatatcac gcgtatgcag agcaaacgag attgcggttg acacgactgt      2760
     atccgtttta tccgctatca ccgtctgttc acaggatgtt agtacacgga gcatctataa      2820
     taaagcattg cattttgcca atagggatga tgtcagaaga agttcaggag cgtggcaata      2880
     agtccatccg gtattttagg gagcatcact cgcgaaaatg tggtcgacag gcaaacatcg      2940
     aggatgtttt caaacgatta atgcttacat cggatccagt gatttcctta aatggaaagc      3000
     ttkcaaaatc tgtaccaaac gaatatccag aggaaatccg aaaccttctt atactgtaga      3060
     tataaataat aatttcatga actaataaaa atttagtttt ccactcaatt taaattatac      3120
     ttaaataatt gtcacaaaaa tcaaattcgc gcaatgaaag aaaaccctcc gaaaaatgga      3180
     attatctcaa aaacaccaaa atataccttt ctcaaatttt gacatccgtt tcatctagca      3240
     ttgttctatg ttgcctgaaa atttgagctt gcgatttttt gcgctttttg agatattaat      3300
     gtttaaaaac tgcacwattt ttcaggtttt ttcgctattt tttaattttt atgcgtcata      3360
     ctgtaaaaaa wtatatacta tagtttgtgt tttttatgtt tacattagca aataatataa      3420
     tttgacataa ttcttaagaa aaatgtcaga tttggtgaaa aaaaacgttt ttttgttaat      3480
     ttggtcttat tttgccaata actcaaaaac agtaggctgt ggaattttga cgtcttcgag      3540
     agagttgttt attttatcaa aatgaacaac tttgtcgaac acgccaagac tctaggacgt      3600
     caaagtaaaa agttagattg tggcgccacc tctgcggacg attttcgaac tatccgttaa      3660
     ggtcagtaga tggtcctcgt tgttacaaaa aactttgccg aagacaccaa atgccggaaa      3720
     tgctttgttg acgagttatt aattttgtcc cgccagattg cgtccgtggc ccatagtg        3778
//
ID   Transib-7_DAn repbase;    DNA;    INV; 3139 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3139
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 283-283 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~99% identical to consensus. 13-bp TIRs. CANTG TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(643..837,841..1332,1305..2708)
FT                 /product="Transib-7_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MPFAPTKRDLFLFLKASEAKTYDAKRIHLQNYVIEKL
FT                 KYKNCPKETEKKRFCSLFRISVKIFLENVIVTDTGIVTTLLEKNATWLDKT
FT                 VTFPCETSVIEKCTPSHDDTIRNGGTKRGRPPKSFEDINERSKKRRVNSLL
FT                 KSTGSELAYAASVNLRSEGNSSGANLVWKVASSKVGDGSQPVNTFTSYTED
FT                 EALALMVSNKLTKHQYLNIRSGIKERGIDRRIHLLIIRLKDTPSYHKIIEA
FT                 KKRCYPNNITITEQSAEVQLQSLLNHLSNRLVQVVQPVLRTLPSNCLSNLI
FT                 LTCKWGFDGSSGHSAYKQRSFEDFNDQNIMITSLVPLELYTPKSNSCQKII
FT                 LWKNCRPSSSRSCVPIKIHFTKETTAVSLSIRDEIESQIGNLVPSTIQNDE
FT                 FHNISISHQMLLTMIDGKVCNALTQTASTQRCYVCGALPSIMNDINTSIQR
FT                 ETDPSTFEFGLSPLHAKIRFFECLLHIAYRLDFKKWQVRSPSEKASFKARK
FT                 AYIQAAFKEKMGLLVDFPKTGGSGSTNDGNTARRFFNDPDISSEITGIDII
FT                 LIKRFGIILQTLSSGFEINSKKFEVYALDTAKMYVNLYNWYNMPASVHKIL
FT                 IHGAAIIKTALLPIGQLSEEAQESCNKDLKRFRENNTRKISRKDTMMDLMH
FT                 NLLISSDPVILSKSKYAQKQPKPLAKEVMELLRLPLDQNVCSDSDSDS"
XX
SQ   Sequence 3139 BP; 1100 A; 536 C; 506 G; 997 T; 0 other;
     cacagtggtc cgggtgcctg ccataaatcc aatttttcaa tagtcctgga tctaaaaatt        60
     tctaatgcac atcaattctt gaatatttga actataattc cccaaagtat tagctagttt       120
     caattccgtt tacatacaaa tttttagcct taaaagtgac aagtggcgaa aatcctataa       180
     aaatataatg taattttttt gttatttacg aacatttttc ctatgaaatt ttttttgtaa       240
     cagttcatta ttactgtaaa ctatatcatc aataaaaaat tttatcaata tgtattgttt       300
     tattgatggg attctcattt aattagcgaa aaatcgtttt tttttttaaa taattttttc       360
     caaatcgaat atttttagcc tttgaacaac ttcgaccgag agactatata ggtaatatta       420
     gtatacatct gcactacaat atccaattta aatttgttgc gcaaagttgc gcaaatgcga       480
     atgcgagcat tttttccaca ataaaataga tttttttttc caaaaccacc ttttcagagt       540
     ttataaatta tttatgcgag acgcatttga cataattttt tttgcctttt ttcgaaagat       600
     tatattattt tacatggaat agcacacgga attccgaaaa tcatgccttt tgctcccaca       660
     aagagggatt tattcctttt cttaaaggct tctgaagcta agacgtatga tgccaaaaga       720
     attcatttgc aaaattatgt aattgaaaaa ttgaaatata aaaactgtcc aaaagaaact       780
     gaaaaaaaga ggttttgctc attattcaga atttctgtaa agatattttt ggaaaactga       840
     gtaattgtaa cagacactgg aatcgtgacg acacttttag aaaagaatgc tacctggtta       900
     gataaaacag tcacttttcc atgcgaaaca tccgtgattg aaaaatgtac accttctcac       960
     gatgatacca tacgcaatgg cggaaccaag agaggccgac cgccgaaatc ctttgaagat      1020
     atcaatgagc gttctaaaaa acgaagagta aatagtttac tcaagtcaac cggatctgaa      1080
     ctagcatatg ctgcatctgt gaatcttcga tcggaaggta atagttctgg cgcaaatttg      1140
     gtatggaaag tggcatcttc caaagtgggt gatggttctc aacctgtgaa cacattcaca      1200
     tcttatactg aagatgaagc tttggcttta atggtatcaa acaaattgac aaaacaccaa      1260
     tatcttaata ttagatcagg tattaaggaa agaggcattg atagaaggat acaccttctt      1320
     atcataagat tatagaagct aaaaaaaggt gttatccaaa caacattaca attactgaac      1380
     agagtgctga agttcaattg caatcacttc ttaatcactt atcaaatcgt ttagtacagg      1440
     tcgtacaacc tgttttacgc actcttcctt caaattgtct ctcaaatttg attttgacct      1500
     gcaagtgggg ctttgacgga agttcaggac attcagctta taaacagcgt tcgtttgaag      1560
     actttaatga ccaaaatatt atgataactt cacttgtacc tttggagttg tatactccaa      1620
     aatctaattc atgtcaaaaa ataatactct ggaaaaattg tcgtccatca tcttctcgat      1680
     cttgcgtacc aattaaaatc catttcacaa aagagactac tgcagtttcg ttgtcaataa      1740
     gagatgagat tgaaagtcaa ataggtaatt tagtaccaag taccattcaa aatgatgaat      1800
     ttcataatat atctatttct catcaaatgc tcttaactat gattgacgga aaagtctgta      1860
     atgctcttac acaaactgcc tcaactcaaa gatgttatgt ttgcggagca ttaccgagta      1920
     ttatgaacga cataaataca tcaattcaaa gagaaacaga tccgtccaca tttgagtttg      1980
     gcttatctcc tcttcatgcc aaaattcgat ttttcgaatg tttgctgcat attgcatatc      2040
     gcttggactt caagaaatgg caagttcgaa gtccttcaga gaaagctagc tttaaagcaa      2100
     gaaaggcata tattcaagca gccttcaagg agaagatggg gttgttagta gatttcccta      2160
     aaacaggagg tagtggatcg acaaacgacg gaaacaccgc acgtaggttt tttaacgatc      2220
     cagatatttc atctgaaata acgggcatcg acataatttt gataaaacga tttggcataa      2280
     ttttgcaaac tctgtcttct ggttttgaaa tcaatagcaa aaaatttgag gtttatgcgc      2340
     tcgatacggc aaaaatgtat gtgaacttgt ataattggta taatatgcca gcttccgtcc      2400
     ataaaatact gattcatggt gcagccataa taaaaactgc tttgctgcct attggacagc      2460
     tctctgaaga ggcacaggag tcttgtaata aagatttaaa aagatttcga gaaaataata      2520
     cacgtaaaat atcaagaaaa gataccatga tggatttgat gcataatttg ctaatttctt      2580
     ctgatccagt aatactttca aaatcaaaat acgctcaaaa gcaaccaaag cctctagcaa      2640
     aagaggttat ggaacttttg aggctgccat tagatcagaa cgtctgctca gattcagata      2700
     gtgattctta gtgagccaat atttttacaa attgttgcag ttaaattttt ctttaacatt      2760
     tctttagtta aaaaaaaaat ttctttaaaa tttaaaaaca aaaattaaaa aataaaaaaa      2820
     aaattttttt ttttaatttt aaaaaaattg aaaaaaaaat tataaaaaat ttaataaaat      2880
     taaaaaaaaa aaaaggagag tctaaattta ccgtaaacct ccacgtggta ctctctgggg      2940
     tcgtgaaaaa tgagataata tattcaccag ctaattacgg aagtaacaac tgccatattg      3000
     gagccgccat tttgaatttt gaaatttcga cttcatattc gaaatcagcg acccccaaaa      3060
     cccccgagta caaattttga actctctacg ttgagtttct gatttatgac cactttttcc      3120
     cactagccgg accactgtg                                                   3139
//
ID   Transib-7_DBi repbase;    DNA;    INV; 1296 BP.
XX
AC   .
XX
DT   10-JAN-2012 (Rel. 17.06, Created)
DT   10-JAN-2012 (Rel. 17.06, Last updated, Version 1)
XX
DE   Transib DNA transposon from the Drosophila biarmipes genome.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-7_DBi.
XX
OS   Drosophila biarmipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1296
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila biarmipes genome.";
RL   Repbase Reports 12(6), 748-748 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. ~60-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1296 BP; 453 A; 175 C; 219 G; 449 T; 0 other;
     gcacagtgga tccaatgaga tatctagcgg aataaaagtc gatttttaac ttttgaaaaa        60
     tacgttgagt ttgattttat ttgattaata atactctgca aagctcaaaa aagcttttta       120
     atgagctttt cagtgcatct ctgatcggct gcgagctttg aaacttaacc tatttgcggc       180
     acgtgtctac acaaagattt gaggttattt gtgattcgtt ttaaattatc aaaacaagtg       240
     atatatttga gtattttgat ataaataact tttttttccc ttaaaataag gtatatacta       300
     aatataaatt gtatgttcgt gacctgtctt tccatgtaca tctaaaaaat gtgtaatttg       360
     taagttgctt ttgcaagatt tggctttgag cagtttacta acttcattgg actataacta       420
     acgttattca atcatattca agctaatttt agtatttatg taaagtgtgg gttcttgtga       480
     tgtgaaaatg tccaaaatga taaccaacta cgtccaactc ttaagattat tgcacttttt       540
     aggtgaaatg tcagtcccga agcgtgttct gttttgcagg tggcttggcg aaaatgtcgc       600
     atcaagaaga ttgttggtgc taaatgaata tgtatttggc acaattttga agaatataaa       660
     catatctgac aacgatatta aagaaattaa taaaaaattg gctaattcat ggtgcagaca       720
     tcataaagca tgtgggtctt cctattggca tgatgtctga agaagccctg gaagccagga       780
     ataaggattt ccggaatata cgggagaatc attctcgaaa gaataataga tctaatacaa       840
     tggaagatgt tatgcacgca ttactcgtgt cttctgatcc actaataaca tcattgtcta       900
     aaatgtcaac aaattcggtt aaatctatta aatttgataa agttgttgct ggtcttctaa       960
     taaatttccc acatttaaat aatgattctg aatcttcaga ttccgaataa tagtagcgaa      1020
     taatatatag aaaataaact cattagttaa aatgtaaatt aaaaaataaa acacttaaaa      1080
     atttaaaaaa aaaatgtgaa catttatatt gttgaatatg gtttttttta catttgtatg      1140
     ggagctatga taaataccta acgtaggaca ttgaaatttg gagaatatac gtaaaatgaa      1200
     ttaaaaactg ttagtacaaa gtttcattaa aatatctatt aatttactaa agttattaat      1260
     ttaattctgc tagcagagct attggaccca ctgtgc                                1296
//
ID   Transib-7_DEl repbase;    DNA;    INV; 2715 BP.
XX
AC   .
XX
DT   28-JUN-2021 (Rel. 26.08, Created)
DT   28-JUN-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-2715
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4022-4022 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 2715 BP; 896 A; 466 C; 496 G; 843 T; 14 other;
     cacagtggtt gcgcccatag gccaaaattc aaaaaatcga cagtaccaaa aattatcgat        60
     aagtatacaa attgtctcaa aaatgaccaa gcttcttaat ggcaaaccgg atttttctgg       120
     aaatctaacg ggactttcta aaaatagaac gcaaagcgtg aacacttggt caattttgca       180
     gcgcagcggc gttactttag catttcgtca aaacaaagtt gcactttaaa gtggtcaaac       240
     gttcgcaaga gaggtccgaa ttagtttatt taaaatgaac tttaaagttt caggtattta       300
     ctttaataag ttattttttt gaaattaatc tgtttgattt gttatttttt gtgtatgttt       360
     gattattaat cctttattta tgtattatgt gaacgtcatt ttcatgttta aatagacttt       420
     tagatatgtt accccccgat ccccccttta ggagtgttat cagtgtattt gtcaatgttt       480
     gaaggtaata aaaacgttaa gtgtagctgc taatacttgc taatttgtgt gtattcatta       540
     ataaacttat gctgtcttac tgttttcagg gtcaaatttg cgacgcagtc tgctgctctt       600
     cctttgcttt tgtgatgttt cttttgtgtt tgtcatttgt gtttgtagac aattttggat       660
     attctttttt tcgctcattt gtatgttatc attttctata ggcgcttctt gtaactgcga       720
     attttcacgc atgtacatct ttgatctttg gtgcacagaa gagggcaaaa atgccgataa       780
     aactcgaaga gtgactactt tggtagaaga gagcattaag aacaagggat acgcagttga       840
     catgataaca cttaagaact gcattagtta catttgcaaa aaaattattg ccttttggac       900
     taaatacaag cgtattaaga gtttaattgt tcaatatcac tctaattgcc tgaacactat       960
     tgaaacaatt ataattgagc ctcctcatcg aagggtttca agtgctgaac gtggacgacc      1020
     caaaattgat tttgccgagt cctcaaaaag gacaaaacgt cgtcggctag ccctactaga      1080
     aacacatgat gagtctgcag cttctgtttt gcgctcatcc gattttccac cgatcctaaa      1140
     gtcatccgaa ccaaatattg aaaaggtttt atcgctttta atggaaactg gaatcacgaa      1200
     acaccaatac ttgctcattc gtgaattcat taatagtgaa gccccatgca atatattgcc      1260
     aagttatgag aaaattctca aatttaagaa ttcaagatat ccgaaagaca taacagtagc      1320
     tgaaacatat gcagaagtcg agctgcagag tctactagac aacacagctt taagtatttt      1380
     acagctccaa aaaactgtaa ttgaaaattg tcttgatggc acagaggaca cattaaaatt      1440
     aattggaaaa tggggatttg atggcagtac tgggcacagt gaatacaagc aaaagttttc      1500
     aaactgtaat gacgatgata gaagtctatt tttaacatcg tacgtcccac ttcagctaat      1560
     aacaatgata ataatgaaag taactccaaa ataatatgga aaaatcctag accatmatct      1620
     acacgctatt gtaggccaat cagacttcaa tttaaaaagg aaacagccat actatccgtt      1680
     gaagaagaag tctacttcaa aaataaaata cacaacttaa tgccaaccga atttcaaatt      1740
     cccgataaaa aattattaat aaatcatgac ctgcacctta ctatggtgga tggtaaagtg      1800
     tgcaacgcgt taagcaaaag cttaatgtac agcaaagaaa agaacsagtc ctcgmggagt      1860
     ttcgcaataa aatgggaata attgtggata agccaagaga cggaggcagg ggaacttcca      1920
     acgacatwtt ttggtaacmc kagtgtggca tctgatatta caggcattga tgamgaagta      1980
     ataactcgat gmgcaacgat attgcaagcc ttagcatcag gatattccat taatgctaca      2040
     aaattwgaaa gctatgcgtt ggatackgct aagaagttga tamaaatata tccatggtac      2100
     tatcttccac caatgcataa aatcttwatt catgatgcga aagtaatcga gcactttagg      2160
     gcacaatcgc tgtcaattgg agagctctca gaagaagstg cggagtcgaa caacaaagaa      2220
     ataaagactg caacatactc ggaagatktc tcgcatactg acaaatacag atttaatgaa      2280
     tacacttctg tcgcgttcag atcctttttg ttttttgtac tgaaattaaa atctaaatga      2340
     ttttgttttt gttttttatg atttaaatac attgaaagaa ctagagaacc tcatttgttt      2400
     atatttcgaa aagcttgtgg agagggggag aggagttaca ctttcacaaa tgtatactga      2460
     agaatttaaa tatacaatct tggatgctga taatgaaatt ttagcactgt aacttcactg      2520
     gaagtatctt tgcgcaccat cgccatataa gccatactaa ggtgctatgt gagctatagg      2580
     atagagtctt ccgatttagc caattttttt actctatatt ctcaatattt ttttagattt      2640
     ttgaggaaaa tttcataacg atatctcaac gggaaatatt tatggccgcg gctccataca      2700
     agcccaacca gtgtg                                                       2715
//
ID   Transib-7_DRh repbase;    DNA;    INV; 1082 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1082
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1424-1424 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5-bp TSDs. 36-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1082 BP; 351 A; 169 C; 199 G; 362 T; 1 other;
     cactatgggg aatttgcccg attttttgga ataaatgtat tttttaaaag tatgccgatt        60
     ttctattttt ttgttttaat gtattaagaa aacatcaagc tgtttggtaa cataccgcaa       120
     atgttaactt aaaagtctag tatttaaata ccaactgtta aagtcagctg ttgcaagcgc       180
     acatggtttg tttacatttt gcttaacttt gaagctcact ttcaaatcat tatctctgca       240
     acaaaatgac gtaagacagt caaatttgaa atgattacca attctcaagg tatgttctgt       300
     gtaaaaatac ttatatattg cttaatatgt gcgtccaatt ttaacaattt gtaaatgtag       360
     caggtgatgt tttcgtttgg gttttggaaa gaaagttaaa ctttcaatag agttttaaaa       420
     aaatgtttaa ctttgttcag tgagtgtcta tatccatgtt gtagagccat taattgcgaa       480
     ttcagaacat attgtctcat cgtgcgcttc gtgcgacttt tcgcgtaatt tcatttttta       540
     gaaaccaatc tcttgatcaa aaacgcagcc ctgctggaag ttttgcataa gcaaaagggt       600
     cttcgagaaa aagaagatgg cgaattcact tttgttagca agcwagttga tcccacagtc       660
     gaatctccaa ctttacagat gtttttcaga gagccatggt tacttcagac cccatcattt       720
     catcaatgaa tttgaagaag cgcgtccgaa aacataagct gcttgctctt ccaccagaag       780
     tcattcaatt gttattatgc gaatatgaac ctggagacga gtctctagat gttgataatt       840
     atgaagaaga aaacgactat gattttttgt acaacattga aattgaaaat taagagcata       900
     tagagctaaa tttgttataa aaaatataaa aaattgggtg gggggggggg gggtatactt       960
     tcacttttcc aacaggtgtg tataggtatg tagaacacta taaaaaaaac ctcactgaaa      1020
     tatgttacat agttcgcgag ttattaattt attccaaaaa atcgggcaaa ttccccatag      1080
     tg                                                                     1082
//
ID   Transib-7_DSuz repbase;    DNA;    INV; 2831 BP.
XX
AC   .
XX
DT   21-JUN-2021 (Rel. 27.01, Created)
DT   07-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-2831
RA   Kojima K.K.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 88-88 (2022).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.
XX
SQ   Sequence 2831 BP; 1023 A; 483 C; 497 G; 825 T; 3 other;
     cactatggtc caagaggccg attttttkgc ataaagtcga aatttttatg ttaatgtttt        60
     gtatttttga ttttaaattc ttaaagttaa taaatcatac ttataaaaac ttaaatawta       120
     aagcttcaaa agcttcactg aagtttttta tgagctttta aaagaacgca atcgatcagc       180
     tgcttaggag taagaaattg gagtcaaatt attttgttta cgtttgtgcg cgaaaattaa       240
     aattatctat ccaaacaaac ttaagttaat aatggaaatt gaagatcaag gtgtgtagta       300
     ttcactgtat attatgcatt tatgtgtagt tttagtcttt gagtgttgtg taatgtccaa       360
     tttatgtgta tttttgtaga aaattaacat gcgtcccctg tgtttcgtgg aatgaaaaaa       420
     acaacaacgt cagtttaatc ccataaatgt cgtttttcag cgctagttaa cacattttcc       480
     ccgttcgtcc cccttttctt acaattctac aatattcagg gacgttcgag tttcgcaata       540
     gcgatctctt cgatatttgg cgcagataca atcgtaaaat atcatttgtg tctgattgga       600
     tttacgaaaa actaagcaaa taccacatag aaggtgagaa aagcgttgac ataaataaaa       660
     aataagttat tttgagttct ttataaaaga aaaacttcct aacgttttaa atcaaagcat       720
     gctaaatgga tatcgtcaaa aatatcctgg acctagacgc ccaacgttgt tgtatacaaa       780
     cgcaggccca agattgaaaa ggaaatttgc atctgaacta gcaaatgaaa aagatcacta       840
     tacaaacttg ctttgcatgc tgcagcagtt tccgctaaga gacaatgtaa tacgaacgtg       900
     gccctggtcc ttaaagaaac gataacagca cctgaataca caacggaatt aagaaagcaa       960
     cttcaattgc aagaaccgag tcaacttaca ccaacttaag ctctaaccta catcttggaa      1020
     aattcattaa ccaaacagca atatctcaac actagggctt tgaacataaa tcatcacagc      1080
     gacatttatc cgagttacaa tcaagtgata gaagctaaaa tgcagtgtcg accaatgggt      1140
     attgaagtta cagaaacttc tgctcaagtt tcactacaaa accttttgaa tcatactgca      1200
     cagcgactaa ttaaaatgca gtccgatgtt ttcaagcaat tttctaatag ttctgaactc      1260
     aaattaattt gcagttatgg ctttgatggg tcaactggac aaagtgcata caggcagaag      1320
     tttgaaataa aaacacctga cgtacagctt ttagatcact ctgtgtatgt tacttctgtt      1380
     atagccataa aaatgattga ctcatttcag cgaaacatct gggttaacag aacacctcag      1440
     tctattcgat tttgcaggcc gcttaaaatt caatttgtaa aagaaactag tgatcacata      1500
     attatgggaa aaaatcagtt agactttcaa atagacaatc tgaaaaggtt ttcttataag      1560
     ctggatgagg ctgatgatgt ggcagtaacc tttaaaatgc atatgacact cattgatggg      1620
     aaagtactaa acgtactaac tggtactaaa tcaactcaat aatgtccaat ttgtggtgtc      1680
     accccaacaa aagtactgga aaccaaagat tttagcttaa aaacctttac ccccaagctt      1740
     gaagctttac attatggggt gactcctcta catgcttgga tcaggtttat agaatttgtc      1800
     ctgaatatat catacagaat ggaaatacaa aaattgcatg taaaaggtga tgacaagatt      1860
     aaaacaagtg ctcgcaaaaa acatattcag gaaaagttgt ggaatgatat gggtctttga      1920
     ataagcatgc caaagcagaa tggcagcggc aacagcaatg acggcagtac agcaagaaga      1980
     gcttttgcaa aatgtgaaca actatcatcc ataaccggct ttaacgaaac ccttttaaat      2040
     aagcttcacg taatattagt agcaatttcc tgtaaccact acataaactc tgaaaagttt      2100
     cggatttttt gtgagaaaac gtttgactta tatatgcata aatacccgtg gtacccaatg      2160
     tcaccaacaa ttcacaaagt actagtccac ggttttcaaa taaataattc gacgttggtt      2220
     ccactaggat gcttaggcga aaatgcttca gaagcacgga ataaaatcta caaaaaagac      2280
     agactctcac acgcaaggaa aaatagtcga atcaatacta tgactgacct attccacagg      2340
     gcgatagatt cctcggatcc tttactatct agtgtttgct taaaggaaag agaaaggaaa      2400
     aacataaaaa aacctcttcc caaggaagta ttaagtcttc tggagttgcc gtctgccgag      2460
     aacaaaaacc caaatgaaaa agaattggac gtgcaatctg attctgattc tgatgaggat      2520
     ctaatcgaag gatgctctat agaactgaga agaagaagaa gaagacgatg tttaaaacaa      2580
     aaaccaattt attaattaaa atttattaca tatatataaa tgtaagtaac ttgactgaat      2640
     tcagagtaaa acttaatttt taagaataat actaggaatt atttagtatg ggaggctaaa      2700
     gaaggcgtgg tcgcacagac ttaaaatwtt ttttgcatac tctacttaaa aaaaaaaata      2760
     tgtgaaagtt tgaggtctgt aagtcaattt ttagagttta tgcaaaaaaa atcgactttt      2820
     ggaccatagt g                                                           2831
//
ID   Transib-7_DTa repbase;    DNA;    INV; 2916 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   03-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2916
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (03-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. A sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(759..1100,1132..2571)
FT                 /product="Transib-7_DTa_1p"
FT                 /translation="MWCSVTGSVAEKAKKVYDDLKHRFQSDGYEIIENVSK
FT                 KLLDYLFKKFAEMWNKCHRIQAKVIQLNSDWLAQFESLSLSRYSKSSDRGR
FT                 PKLSLAECSERTKRRRISRARCVRCGSSIVPAKECEVVALITEANLTKHQY
FT                 ELIKCFVNSKIDAHFFPCYNNILKEKQKSYPEPISVTESDIEVSLQSLLDH
FT                 TASDKLDEGYSNLTLIGKWGFDGSSGHSQYKQKFENNNLDDNCLFVTSYVP
FT                 LQLIVKSENDKEQKIVWKNPRPSSTRYCRPIRIQFRKESVDLIKNKELYFK
FT                 NKIKQLTPTEFKTVTNRIFQIDHFLQLTMVDGKVCNALSKTPSSKCYICQA
FT                 KPTEMNDIKKCLQKEARTDRYEFGLSPLHAYIRFFEYFLHVSYKLEIRQWQ
FT                 VRGEENRKLFQKRKQNIQSEFRDKLGLIVYKPKSGGSGNSNDGNTARKFFN
FT                 NSHLSAEITGIEQHLIENCATLLQALSSGYKINLEKFRKLALDTAKELTSK
FT                 YSWYYLPSSVHKILIHAPDVIQSALVSIGELSEEAAESRNKDVKMYRLNHT
FT                 RKTSRLATNKDLINRLLLTSDPFITGQRNLPNKCKTILSKRVFDLLE"
XX
SQ   Sequence 2916 BP; 1019 A; 466 C; 479 G; 952 T; 0 other;
     cacagtggtt gatttcatag gccaaaaata aaaaaacaaa aatctgaaat tggggatttt        60
     ttttcttaaa aatatttctt aacagagcaa taaatcgaac ggtaatttca tttttggtct       120
     ctctaattcg tacgcgctac gaatagcgag agaagtgagg caaaaaaaaa cgtgcacttt       180
     acagcgaacg cagcttaaaa attagcttcc actaaaaaat taatttctaa tactaaatcg       240
     agtccaatcg tcggcattta aaatgaatat tgaaaataaa ggtatatact ataaaactga       300
     gtaattttta tgtcattatg ttatgtgtta ttgttttaaa attagtgttt tatcagtgac       360
     ctgtcgagtg gtgtattttt gtgtatacat agatttcaga taaagaaaaa gttgtgaatc       420
     ccgtcttacc ctttaatgaa ataaatttat aaataatagt gaatgttttc ttagcctatt       480
     tcataaattt gagctgcaac tttttgcaac tttatgactt atacgctctt ttgtgttcgt       540
     gcatattttg tgttttgttg tgttcgtcat attcgtttgt gctttgaaat ctcaattggt       600
     ccatagagat gcagaaaata tcgatattaa atcgaaaaac atcgctattg ctcaattgtg       660
     aattttttaa ttgatttctt taaatttctt taaactgttt tttttaatat ataggcaatt       720
     catatcagtg cacactatca cgcttaaata tttttgaaat gtggtgctca gtaacaggtt       780
     cagttgctga aaaagctaaa aaagtatatg acgacctaaa acatagattt caatctgatg       840
     gttacgaaat tattgaaaat gtttctaaga aactacttga ctacttattc aaaaaatttg       900
     ctgaaatgtg gaataaatgc catagaatac aagcaaaggt tattcaacta aattctgact       960
     ggttagcaca atttgaatct ttatctttaa gtcgatacag taaatcatct gatcgaggac      1020
     gtccaaaatt aagtctagca gagtgctcag aaagaacgaa gcgacgacgg attagcagag      1080
     ctcgatgcgt ccgctgcgga tgacatacgt tgggcttgca ggcaagcgta gtcttctatt      1140
     gttccagcaa aggaatgcga agtagtagct cttataactg aagcaaattt aacaaaacat      1200
     caatatgaac ttatcaaatg cttcgttaac agtaaaattg atgcacactt ttttccctgc      1260
     tataataata ttttaaagga aaaacagaaa agctatcctg agccaattag cgttacagaa      1320
     tctgacattg aagtttcttt acaaagttta ttggaccaca ctgcgtcaga taaactcgat      1380
     gagggttata gtaaccttac attaataggg aaatggggct tcgatggcag ctctggacat      1440
     agccaataca agcaaaaatt tgaaaataat aatttggacg acaattgctt atttgtcacg      1500
     tcatatgttc cgcttcaatt aatagtaaaa tctgaaaatg ataaggaaca gaaaattgtt      1560
     tggaaaaacc cacgtccatc gtcgactcgt tattgccgcc cgattcgaat tcaatttcga      1620
     aaggaatcag tagatttaat taaaaataaa gaactatatt ttaaaaacaa aattaaacaa      1680
     ttgactccca cggaatttaa aaccgtcacc aacaggatat ttcaaatcga tcattttctt      1740
     caactcacta tggtggatgg aaaagtttgc aatgccttaa gtaaaacacc atcttcaaag      1800
     tgctacatat gtcaagcgaa acctacggaa atgaacgaca ttaagaaatg cctacaaaaa      1860
     gaagccagaa ccgatcgata cgaatttgga ttgtctccat tacatgcata tattcgtttt      1920
     tttgaatatt ttcttcacgt ttcctataaa ctcgaaatta ggcagtggca agtaagaggt      1980
     gaagaaaata gaaagctatt tcagaaaagg aaacaaaata ttcaatccga atttcgagat      2040
     aagttgggtc ttattgtcta taagccaaaa tcaggtggta gtggaaattc gaatgatggc      2100
     aacactgcca gaaaattttt caacaattcc cacttatctg cagaaataac tggcattgaa      2160
     caacatttga tagaaaattg tgcaacatta ctgcaagcct tgtcctccgg atataaaatt      2220
     aacttggaaa aatttcgaaa attagctcta gatacagcaa aagaactgac ctcaaaatat      2280
     tcctggtatt atttgccttc ctcagttcat aaaatattaa tacatgctcc agatgttatt      2340
     caatctgcat tagtttcaat tggagagctg tcagaagaag ctgcggagtc aaggaacaag      2400
     gacgttaaga tgtatcgact caatcacaca cgtaaaacct cacgtcttgc cactaataaa      2460
     gaccttataa atcggttgtt attaacttca gatcctttca taactgggca acgtaactta      2520
     cccaacaagt gtaaaacgat tctctcgaaa cgtgtttttg atttgttaga ataaaaatat      2580
     atattgaata tatatttaga aaaatatagt tttttgcatt gttttattta atttaaatac      2640
     aaagagctac tatatattgg aacctgtttt tattttattt tgtatagata caataaaata      2700
     tatattgaga ttttcttacc ctaaaagtat gcaatggaat ttaagtctta aaatgttgtt      2760
     ttttaatatt ttcgggcttt aacttatggt tttttattat tattttttta ttttatttat      2820
     cttatcgggt ctataaagca atatacaaat tttcagctca ataatccaac tggaagtatt      2880
     tttggccgcc tctgccatac tagatcaacc actgcg                                2916
//
ID   Transib-8_DAn repbase;    DNA;    INV; 2989 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-8_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-2989
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 284-284 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 3' truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(758..1954,1936..2589)
FT                 /product="Transib-8_DAn_1p"
FT                 /note="transposase."
FT                 /translation="MQKKIRRVTSAIEESIKHKGYAVDMTTLSNCISYICK
FT                 KNCTFWAKYNRFKNSIVKHQSNWLNTIETIIIEPPQQGIASAERGRPKIDF
FT                 AESSKRTKRRRIALLEKQDESAASVLRSSYFQPIPKSSETNMEKVSSLLMD
FT                 TGITKHQYLLIREFINSEASCNILPSYEKILKFKTLRYPENITVAETYAEV
FT                 ELQSLLDNTASSILELQKTVTENCLDGTENTLTLIGKWGFDGSTGHSEYKQ
FT                 KFSNCNDDDRCLFVTSYVPLQLISESNSKIIWKNPRPSSTRYCRPVRLQFK
FT                 KETATLSVEEELYFKNKIDNLKPTEFESPNKKLFINHSLQLTMVDGKVCNA
FT                 LSNTSSMKCFICGAKPTEMNNIEKCLTKIADKKYYEFGLSPLHSYIRFFEY
FT                 FLHISVLFAHFVKLEIKMWQARSAEQKLNVLQRKERVQAQFRDKMGIIVDK
FT                 PRDGGRGTSNDGNTARKFFGNPSLASDITGIDEEVITRCATILQALASGYS
FT                 INAKKFEIYALDTAKQLIKIYPWYYLPATVHKILIHGAKVIEHALLSIGEL
FT                 SEEAAESNNKEIKKCRLQHTRKMSRILTNTDLINTLLLRSDPFITSQRKLP
FT                 KRDKSNFSPSTFDLLEDIC"
XX
SQ   Sequence 2989 BP; 1038 A; 514 C; 517 G; 920 T; 0 other;
     cacagtggtt gcgcccatag gccataattc aaaaaatccg cagaacagaa aatttgcgaa        60
     aagtaaacaa aaagtctaca taatgtccaa gtttctcaat ggcaaaccag atttttcaga       120
     aatctaacgg gactttctaa aaatagaatg caaagcgtga acaagtgttt agttttgaag       180
     cgcagcggcg ttaagttacc tcttcgtcaa aatattactg gatttcaaag tgttcaaacg       240
     tttgttagag aggtcctaat tttattattt aaaatgaatt ttaaagttga aggtatttac       300
     ttactaatta cttattgtga aatttatttg ataaatattt tattcgttat gtgtttttaa       360
     ttaactatac attttttgtg tattatatga acgtcttttt catgtttaag tagactttta       420
     gatatgttcc ccccccgatt ccccctttat gagtgatatc agtgcatttg ccaatgtttt       480
     caggtaataa aaatgttaag ttcaactgcc gatttttgcc tatgtgtata tactcattaa       540
     taaactcaag ctgtcaaggt caaattcgcg acgcaatctg ctgctcttcc tttgctttta       600
     tgatgtttct tttgttttcg tcatttgtgt ttgtcgataa tttcgcatat tattttttcg       660
     cttattttta tgttttcatt tttaataggt gcttcttgta agtgcgaatt ttcacgcatg       720
     cacgtctttg atatttggtg caaagaaaag ggcgttgatg cagaaaaaaa ttcggagagt       780
     tactagtgca atagaagaaa gcattaaaca caaaggctac gcagtcgaca tgacaacact       840
     tagtaattgc attagttaca tttgcaaaaa aaattgtact ttttgggcca aatacaatcg       900
     ttttaagaat tcaattgtta aacatcaatc taattggctg aacactattg aaacaattat       960
     aattgagcca cctcaacaag ggattgcaag tgctgaacgt ggacgaccca aaattgattt      1020
     tgctgagtcc tcaaaaagga caaaacgtcg tcggatagct ctgctagaaa aacaagatga      1080
     gtctgcagct tctgttttac gctcatccta ttttcaaccg atcccaaagt catccgaaac      1140
     aaatatggaa aaggtctcat cgcttttaat ggacactgga atcacgaaac atcaatactt      1200
     gcttattcgt gaatttataa atagtgaagc ttcatgcaat atattgccaa gctatgagaa      1260
     aattctcaaa tttaaaacct taagatatcc agaaaatata acagtagcag aaacatatgc      1320
     agaagttgag ctgcagagtc tactagacaa cacagcttca agcattttag agctccaaaa      1380
     aactgtaact gaaaattgtc ttgatggcac ggagaacaca ctaacattaa ttggaaaatg      1440
     gggctttgat ggcagtacag ggcacagtga atataagcaa aagttttcaa actgcaatga      1500
     cgatgataga tgtctatttg taacatcata cgtcccactt cagcttatat ctgaaagtaa      1560
     ctcaaaaata atatggaaaa atcctagacc atcatctaca cgctattgta gaccagtcag      1620
     acttcaattt aaaaaggaaa cagccacact atccgttgaa gaagaactgt acttcaaaaa      1680
     taaaatagat aacctaaagc caaccgaatt tgaaagtccc aataaaaaat tatttataaa      1740
     tcatagcctg caacttacta tggtagatgg taaagtgtgc aacgcgttaa gcaatacgtc      1800
     gtctatgaaa tgctttatat gcggtgcaaa gcccaccgaa atgaataata tagaaaaatg      1860
     tcttacaaaa atagctgaca aaaagtatta tgaatttggc ttatcaccac ttcattccta      1920
     catacgcttt tttgagtact ttttgcacat ttcgtaaaat tggaaataaa aatgtggcaa      1980
     gcgagatcag cagaacaaaa gcttaatgta ctgcaaagaa aagaacgagt acaagcgcag      2040
     tttcgcgata aaatgggaat aattgttgat aagcctagag acggaggcag aggaacttcc      2100
     aacgatggaa atacggccag gaaatttttt ggtaacccga gcttggcatc tgatattaca      2160
     ggcattgatg aagaagtcat aacccgctgc gcaacgatat tgcaagcctt agcatcagga      2220
     tattccatta atgctaaaaa attcgaaatc tatgcgttgg atactgctaa gcagttgata      2280
     aaaatatatc catggtacta tcttccagca acagtgcata aaattttaat tcacggtgcg      2340
     aaagtgatag agcatgcgtt gctgtcaatt ggagagctat cagaagaagc tgcggagtcc      2400
     aacaacaaag aaataaagaa atgccggctg caacatactc ggaagatgtc tcgcatattg      2460
     acaaatacag acttaattaa tacacttctt ttgcgttcag accctttcat aacaagtcaa      2520
     aggaaactac caaaaagaga caaatctaat ttttctccca gcacatttga tttattagaa      2580
     gatatttgtt aatatttatt tcactcccaa ttttttaaat acatttattc ttatatacat      2640
     atcataaaag gaactttaga acctcatttc attatatttt gaaaagcttg tgggaaggag      2700
     gagaggagtt actattttat actctaaata atttaaatac aaataaattg gatgcctaat      2760
     aatgaaattt tagcactgta attctactgg taagtaagca agtatttgct tagagcaccg      2820
     ttgccatata atactactgc catacttact acggtgctat gagagcaata ggatacagtc      2880
     gtccgatgta tccaattttt ttactatata ttaaaaatat tttttttaat ttttggaaaa      2940
     aatttcacat tgatatctca acggaaagta tttatggccg cggctccat                  2989
//
ID   Transib-8_DRh repbase;    DNA;    INV; 1060 BP.
XX
AC   .
XX
DT   27-JUN-2012 (Rel. 17.08, Created)
DT   27-JUN-2012 (Rel. 17.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila rhopaloa genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-8_DRh.
XX
OS   Drosophila rhopaloa
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; rhopaloa subgroup.
XX
RN   [1]
RP   1-1060
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila rhopaloa genome.";
RL   Repbase Reports 12(8), 1425-1425 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5-bp TSDs. 34-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 1060 BP; 324 A; 174 C; 187 G; 375 T; 0 other;
     cactatgggg tttttgacca ctttatgtgg catttagtca ttttttaaaa gtgctctaat        60
     taaaaaaaaa aaatgggagt gcattaacag aacatcaaac tgttatgcct catactcaaa       120
     atgttaatac ttaacagcat atgttagcat aacagctgta aagtcagctg ttgcatccaa       180
     aagcaccagc gctaagtttg caattttttc aaagcgttct ttgaaattaa tttattcgtg       240
     taaaacacca tttgaaaaga aaaaaacaaa tggaaactga tctcacaggc ttgtactata       300
     tgttaaatgt attaattgtt taaattatgt gtgtttatac taatattttg tcattttata       360
     aatgcacctt aagctgaatt ttgaggaaca aatttcaact ttgggaagag ttttgaaata       420
     gaagtttgca ttagttttca atgcgtccaa gtgtatgttg tagccttgtc aattctgagc       480
     aaaaatctgt tagtcttatt gtgcactttt ccgcactatt ggtgcaattt gaatttttct       540
     tagataacct cactttctcc aacgccgact tggttgctgt ttggaatagc gagaagggcc       600
     ggcttgagca agaaaaggct atacaatgtt tgatgaacaa attatttata atatgaggat       660
     cattttgata tgtttgtcct gtcagttgcc cgtcaatttg gacaaattcg aatcattttg       720
     cctacaaact ggcgaattgt tagtcgatat gtatccgtgg ctgccgatga gttttgagtt       780
     tgatgaaatt ttttcttttt gcttttgttg cactttttat catccacttt tataggcatg       840
     gagcaacaaa tttcagctcc ttaaatttca ttaatttttt ttagttttaa ccgatcgttc       900
     ctatgggagc tataggatat tgtttcctga tccaaacgat tttcacacta tatgtgccta       960
     gggacaaaca atgacgattg gtaaagtttc atgtcgatat ctccaaaact gaccgagtta      1020
     ttaattaatg ccacaaaaac aggccaaaaa ccccatagtg                            1060
//
ID   Transib-8_DSuz repbase;    DNA;    INV; 3028 BP.
XX
AC   .
XX
DT   13-JUN-2021 (Rel. 27.01, Created)
DT   12-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-8_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3028
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 119-119 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           587..2626
FT                 /product="Transib-8_DSuz_1p"
FT                 /translation="MSEATKNAKEIAIFNYMKSAVRGPCSEHDEEXLAEKS
FT                 KIICYKISDYWLKAKRNLNQFKRRHSSWLSSQTEVSIKKRLGSVGRPALXY
FT                 LSKRHRSQRKEASDLASFKAGNVRLLIQAASAAARKRAQPDLAYVLKLLAL
FT                 SPEKAKSIRKVLSXPIAKPTKVSANEALALLLDQGLTKQQYVAVREQTKNN
FT                 IYPLYKEVADQKKNCRPSELQISETKAEVPLQNLLDHTAARIASLQEEVFL
FT                 SXMKEQGTDFLAADLILSYGFDGSSGQSXYKQGYSSEQPFTADSSIFATTV
FT                 TPLRLIDASTNILWNNKTPQSIRFCRPLKLAFMKETKDSILNESEYLKRQI
FT                 DKLQSCKIILSDGKFVYIKFRLYLTVIDGKVLNALTGTNSSQACPICGATP
FT                 KDFLNNKNFKCEKFLPIMKNLHYGLSPLHCWIRLFEFVLHAGYKCQIRKWR
FT                 ISNENDKRELARRKSLIQDLFWKLLSLKVDQPKVGGFGSTNDGNTARRAFS
FT                 EPETFSEITGIDLRLIKNLRTILICLSSQLPIDVTKFQSFCHKTAEIIVYE
FT                 YSWLPMTATVHKILVHSADIIQNTVLPVGYFGEEGAESRNKIYKSDRLHHA
FT                 RKCSRKLNFTDVFQRAMDTSDPIISSINLNRRLQKKLNLPSEVIQLLSCEF
FT                 KSTGDLEDDDVENNFLGSSWDIQLENEGHDQ"
XX
SQ   Sequence 3028 BP; 1004 A; 573 C; 568 G; 874 T; 9 other;
     cactatgggg aatttgacca catttattgg ccaaaatcga ttttttaaaa gtcgttaaaa        60
     attggttttg tttatcacga tgcattagga taacatcaaa ctcaaatgtt attaacagta       120
     aagattaaca gtccacgtca ctgttaagta atcagctgtg aaagcacgtt ttaattttaa       180
     cgagttggca gcgcaaagaa atcgcattgt tttcttaaaa gttaaaagtg aaaaaaagtg       240
     tacaaataat caatttaaga gcagttttta aaatgcagtg cattcagagt ggtttgtaat       300
     aagtgtttgt gaacgtgaat tgtagaaata gattgtggtg tccctataat cttgtgtaag       360
     ttctaacctt aaaaaattgt aaaacctgta gtttatttta atctttgaat agagctacaa       420
     agtgagtcca gctctttcca cctctaaaac ttgttttatg ttgtaaagta atcaattctt       480
     attgtaccta gttagtataa aagtgcactt ttgcgcactt tctctgaaat ttaacttttt       540
     agatcctaac ctcacctttg caaacagcgt tttgcttgaa aagtggatgt cagaggcgac       600
     gaaaaatgct aaggagattg ccatcttcaa ttacatgaaa tcggcagtac gcggaccttg       660
     ttctgagcac gatgaggaas ttttggctga gaaaagtaaa atcatttgct acaaaatctc       720
     tgattactgg ctaaaggcca aaagaaacct aaaccaattc aagcgaaggc attcttcttg       780
     gctaagctcg caaacagaag tatctattaa gaagcgttta ggatctgttg gacggcctgc       840
     gttgwcttac ctatctaaaa gacatmgatc acagaggaaa gaagcctcag atctagcatc       900
     attcaaggca ggcaatgtaa ggctgctaat tcaagctgca agtgcagctg cwcgcaagcg       960
     cgcccaacct gaccttgcat atgtcttgaa attgttagct ttatcgccgg aaaaagccaa      1020
     atccattcga aaggttttaa gtsagcctat tgcaaagcca acaaaggttt ctgctaacga      1080
     ggctttagct cttcttttag accagggcct aacaaagcag caatatgtcg cagtcaggga      1140
     gcaaactaaa aacaacatat atccgctgta caaggaggta gctgatcaga agaaaaattg      1200
     ccggccctct gaactgcaaa tttccgagac aaaggcagag gtacctctac aaaacctwct      1260
     cgaccacaca gcagctcgca ttgcatcctt gcaagaagag gtatttctga gcmtaatgaa      1320
     agagcaaggc acggattttt tagcwgcaga cttaattctg agctacgggt ttgatggcag      1380
     ctctgggcag tcaamctaca agcaaggata ctcatcagag cagcccttca ctgctgactc      1440
     gagtattttc gctactacag taacgccact gagacttatt gatgcctcta ctaacatatt      1500
     gtggaacaat aagacacctc agtctattcg cttttgtcgc ccattaaaat tagcgtttat      1560
     gaaggaaact aaagactcaa ttcttaatga aagcgaatat ttaaaacgcc aaatagataa      1620
     attacaatcg tgtaaaatta ttttaagtga cggaaaattt gtttacatta agttccgcct      1680
     atacttgacg gttatcgatg gtaaagtcct gaacgcattg acgggaacta attcctctca      1740
     agcgtgtccg atttgtgggg caacccctaa ggacttctta aacaacaaaa attttaaatg      1800
     tgaaaagttt ctcccaatta tgaaaaatct tcattacgga ttaagtccgt tgcactgctg      1860
     gattcgtctt ttcgaatttg tgttgcatgc aggctacaaa tgccaaattc gaaaatggag      1920
     gatttcaaat gagaatgaca aaagagaact tgcgagaagg aaatccctga tacaggattt      1980
     attttggaag ctgttgtcgc tgaaggtcga tcaaccaaaa gttgggggct ttggcagcac      2040
     aaatgatggc aacacagctc gccgtgcctt cagtgaacct gaaacatttt ccgaaattac      2100
     tggaatagat ctcaggctca ttaaaaacct gagaactatt ttaatatgtc tgtcaagcca      2160
     gttgccgata gacgtaacaa aatttcaaag tttctgccac aaaactgctg aaattattgt      2220
     gtatgagtat tcttggctac cgatgacggc gacggtacac aaaatccttg tacactcagc      2280
     tgatatcatt cagaacacag tccttccagt tggttacttt ggggaagagg gtgctgagtc      2340
     gcggaacaaa atttataaat ccgatcgcct gcaccatgcc agaaaatgct cccgtaaatt      2400
     aaattttaca gacgtgttcc aaagagcaat ggatacgtca gatcccatta tctccagtat      2460
     aaacctaaac aggcgattac aaaaaaagct taaccttcca agcgaggtta tacaactact      2520
     gtcttgcgaa ttcaaaagta caggcgactt ggaagatgat gacgtggaaa ataattttct      2580
     tggaagttca tgggatatcc agctcgaaaa cgagggccac gatcaatagg tttgcaaaat      2640
     aaatatatat aatcaaaaca aaattctaaa catctatagt ttattacaga tttgttgtgc      2700
     tcttctgaac tctttgtaaa tttgttcagg aaaatgttct tcaaaataaa caaattgcaa      2760
     tttccagtag aaaaaaaacg gtaggaccac tcacattttt tatcaaatga tgttacttta      2820
     caactctagt cacaataaaa aaattttgtt ctgctcaata ctaaccaaaa aaaaaaaatt      2880
     tttttttaag gcgtgaccac gccttttttt tttttaatat attccttttt ttattattaa      2940
     ccaaattcta aaaacagaac ccaaaaatat tgcttagttt ttaagttatt aattaatgcc      3000
     acaaaaagtg gtcaaattcc ccatagtg                                         3028
//
ID   Transib-8_DTa repbase;    DNA;    INV; 2735 BP.
XX
AC   .
XX
DT   03-SEP-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome. A sample
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-2735
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Direct Submission to Repbase Update (07-SEP-2021).
XX
DR   [1] (Consensus)
XX
CC   5-bp TSDs. A reconstructed sample sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(490..1389,1393..1542,1546..1758,1762..2472)
FT                 /product="Transib-8_DTa_1p"
FT                 /translation="LIVFARSCPFYLSHPAKDKVELSHSTLLDIWVRSNRS
FT                 KEAIFNYILDKLGTKELNLEIKNNILTKARSFDIFVRNHLRKCNRDIENLK
FT                 KNRSAWLNAKMEIDLSINIAASSLDVNRGRPKLTYENGKSRLKHKLATDLA
FT                 NREANNTSLILHAATISAKKENEKDFALLLKNSANGAKEVKRKLLLPDPVP
FT                 LTPNEALAFILENSLSKSQYINMRDLSKMHFSDIFPSYDKVLKAKLECRPK
FT                 DILVTEISSRVSLQNLLNHTASRILQMQEEVFIQHESITEVKLIVSYGFDG
FT                 STGQSMYKRFKDEEPTSSDHALFVTTIIPLKLLDYNGTVLWMNRNPQSVRF
FT                 CRPLKINKLQNTFLQKKKKCQKCPICGASPKQFMEIGDIHSPTFKPKPGSL
FT                 QYGVSPLHAWIRFFEFVLHISYRVGICWQIRNSEDKLLLSDRKQYIQKRMR
FT                 EEMGLLVDKPKQSGSGNTNDGNTARKAFADIELLASILDFDLNLLNRLKNI
FT                 LMAISCEFAINTAKFQDYCATTAKLYIAKYPWYPMSSTIHKILIHGAQIIE
FT                 SSVVPIGCLGESASEARNKFYKSYRRSHARQNSRLNNMMDVFHRTVDSSDP
FT                 LLSSLYLSKRSNQNVKKVLPQELLGLLETPSYENNTQNEEGDFDSDSDSQF
FT                 SFELEAVEN"
XX
SQ   Sequence 2735 BP; 970 A; 460 C; 493 G; 812 T; 0 other;
     cacactggtc gaaatgacca atttttttgc ataaaatcaa aatttttaag ttaaaatatt        60
     ttgaattgac ttaaatattc ttttaatata ttgtttaact acaaacaatc gataacttta       120
     agttgaatat ctgcaaccct gaagttttgc tagggccgca aagttcgttg accgatcagc       180
     tgcttgcaag caaaaagacg cggcaaattg ttgagtaagt ttgacaattc gcagatttta       240
     attttgtgca ccaatttaaa tacaaaaata tggataatat tgctcaaggt atgtagatta       300
     taggttaaat caattatttg aatatatgtg ttatctgttt atattgttaa ttgtttttgt       360
     attctcttaa agtagtatat ttttaaccaa agtgtccgtg ttttgtggaa tataactaat       420
     ctggtatgac tcgctattaa aaagtaagtc tgcaaaatta tttgttaata tatatattat       480
     aagaattgat taattgtatt tgcccgttcc tgcccgttct atctttccca tccagctaaa       540
     gacaaggttg agctcagcca tagcacgctg ctcgacattt gggttcgcag taaccggagt       600
     aaggaagcta tatttaatta cattttggat aaacttggca ccaaggagct gaacttggaa       660
     atcaaaaaca atattctaac taaagccaga agttttgata tttttgtccg gaatcacttg       720
     cgtaaatgca atagagatat agaaaactta aaaaaaaatc ggtcagcctg gttaaatgca       780
     aaaatggaaa tcgacttaag cataaacatc gcagcttcat ctcttgatgt taaccgagga       840
     cgtccaaaac ttacatatga aaacggaaaa tcacgtctta aacataagtt ggcaactgat       900
     ctggcaaaca gagaggcaaa taacacaagc ttgattttac atgcagctac aatttcggca       960
     aagaaagaaa acgaaaaaga ctttgcttta cttttaaaga attctgcaaa tggagctaaa      1020
     gaagtgaagc gaaaactact tttaccagat cccgtaccac taactccaaa cgaagctcta      1080
     gcatttattc tcgagaattc attaagtaaa tcgcagtaca taaatatgcg ggacttaagt      1140
     aaaatgcatt tctctgacat atttccatca tatgacaagg tgttaaaagc gaagctagaa      1200
     tgtagaccca aggatatatt ggttacggaa atctcatcta gagttagttt gcaaaacttg      1260
     cttaaccaca ctgccagtag aattctacaa atgcaggaag aagttttcat tcaacatgaa      1320
     tcaataactg aggtgaaatt aatagtaagt tatgggttcg acgggtctac tggtcagagt      1380
     atgtacaaat aaagatttaa agatgaagaa ccgacttcca gtgatcacgc tttatttgtc      1440
     acaactataa ttccacttaa actattagat tataatggaa ctgtactatg gatgaaccga      1500
     aacccgcagt ctgtaaggtt ctgcagacct cttaaaataa attagaaact acagaacaca      1560
     ttcttgcaga aaaaaaagaa atgtcagaaa tgtcctatat gcggtgccag cccaaaacag      1620
     tttatggaaa tcggcgacat acactcacca acatttaagc caaaaccagg aagcctacaa      1680
     tatggtgtga gtccacttca tgcgtggata agattctttg agtttgtttt acacatctcg      1740
     tacagagttg gcatttgtta atggcaaatt cgaaattctg aagataaatt attgttatca      1800
     gatagaaagc agtatataca gaagagaatg cgagaagaaa tggggttatt ggtagataag      1860
     ccaaaacaaa gcggtagcgg caacacaaat gatggcaata ccgcaaggaa ggcgtttgca      1920
     gatatagagc tattggcatc gattctagat tttgatctaa atttgctaaa cagacttaaa      1980
     aatattttaa tggccatatc ttgtgagttt gcaataaata ctgcaaaatt tcaagattat      2040
     tgcgcaacga ctgcaaaact ctatatagcc aaatatccat ggtatcccat gtcatcaaca      2100
     atccacaaaa ttttaataca tggagcacag ataatagaat cttctgtagt gcctatcggc      2160
     tgcctgggag aaagcgcatc agaagcgcga aacaaatttt ataaaagtta taggcgatct      2220
     catgcacgac agaattcaag gctgaataac atgatggatg tgtttcatag aactgtggac      2280
     tcttctgatc ccctcttatc tagcctttat ctcagcaaaa ggtcaaatca aaatgtgaaa      2340
     aaagttctgc cacaggaatt gttgggactt ttagaaaccc caagctacga aaataatact      2400
     caaaatgaag agggtgattt tgactccgac tctgatagtc aattttcttt tgagctggaa      2460
     gcagtggaaa attaaaaatg tagagatagt tatgtaactt actaaaatat aattgttttc      2520
     taatattaga acgaaaaaaa aaaatacctt tctttcactc atttagttaa cactacgctt      2580
     cgcaaaatat ggacggtaag tgtaggcgtg gccagatcaa actgatagtt tctatatatc      2640
     tttataataa tcttactatc aaatgtgcca agtttcagcg ctctgtaaac atttttggaa      2700
     tttatgcaaa aaaattggtc atttcgacca gtgtg                                 2735
//
ID   Transib-9N1_DSuz repbase;    DNA;    INV; 1735 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-9N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1735
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 90-90 (2022).
XX
DR   [1] (Consensus)
XX
CC   92% identical to consensus.
XX
SQ   Sequence 1735 BP; 588 A; 280 C; 284 G; 583 T; 0 other;
     cacagtggtt gcgcccatag gacaaaatta aaaaaatcat aacaacaaaa atttgcgaaa        60
     agtaaccaaa tcgcctctaa aatgaccaaa cttcttcata gcaaaccggg tttttctaga       120
     tatctaacgg gactttctaa aaatagaatt gaagctgtga acacgtgttc atttgcaaag       180
     cgcagctgca cgcatcgcga atatttcaca acaaaagcga gcttcaaagt gttcagtcaa       240
     ctaattacgc tgcccaattt aaattatata aaatggattt tgaagttaaa ggtattattt       300
     ttaagtttca atattaataa aagctaactt gtgttgtcgt tattttgaaa ttaattcttt       360
     actttattat atttttagta tcttttgtat tcgtgttttt tatgtttaca aaaagtttta       420
     actgtgatcc cccaagatgt cccgattaat tttttttcag tgtatttgtc aatatcttaa       480
     ggtataaaaa aagttaaagc tagctgcaga tatttgcaga tttgtgcata atcaaccata       540
     tactaacatc gtctcttttt ttcttcaagg tcaaagcagc tgttttacat tttgcatttt       600
     gctgtgtctt tctgttcgtc tttagtgttt tatgtttttt taggttcaaa ttttaatttt       660
     tatagcgtta tttctttatt cggttcaaca tattcaaata ttggtgtaca gtaatcggca       720
     ccaatgcaga aaaattacgg aaggccatcg aacatgtgaa cagcaatatt gaaaacattg       780
     gctacgtgtc cgagatgagc gtgttaacga aatgtattga atacatttgc aaaaaaatta       840
     cttcgttttg gacacaatat aaacgcagaa gggcatcagt tcttgagttc caatccaatt       900
     gacttaacga aaaggaaaca actttaagta agccaagtaa accttaagaa ataatcgaac       960
     tgctaagcgt ggacattggc atcaggctac aaaaacaatg cggcaaaata tggagaatat      1020
     gcacttgata ctgccagaaa gctgattagc ttgtatccat ggtactatct tccaccatcc      1080
     atacacaaaa ttttagttca tagtccagat gtcataaatt atgcacttgt gacgattgga      1140
     gaattaacag aagaagctgc agagtcaaaa gataaggaca tcaaaatgtt tacatgaaag      1200
     cacaccagga agacttctcg gattgacaca aacacagatt tgatgcacag atgacttctg      1260
     agctcagatc cttatgttac tggccaaaga aagctcccac attcaaaaaa gtcagtttta      1320
     tcagcatcag catttgaact actcgatgac ttaaattatc atttattttt aaaattttgt      1380
     tttcttttgc tgtaattttg tttattatta ttatgttttt ttcatgaaat ttacatataa      1440
     taatccaaac ttacggatta acattgatgg gcggataata gaacacgact ctttctctta      1500
     aaatattatt taaatgtaat aatacttaaa taaaaaggtt tgaaactgaa aatagcaacg      1560
     cgtttgaaat ttggtccgat attttgtatg gtagctatag gatatagtcg ggcgatatgt      1620
     tcaatttttt ttactataat taaaatattt ttatagaatt ttgggaaaat ttcgaaacga      1680
     tataacaact aaaagtattt ttggccgcgg cacccacaca ggttgaacca ctgtg           1735
//
ID   Transib-9_DAn repbase;    DNA;    INV; 1305 BP.
XX
AC   .
XX
DT   06-JAN-2012 (Rel. 17.03, Created)
DT   06-JAN-2012 (Rel. 17.03, Last updated, Version 1)
XX
DE   Transib DNA transposon from fruit flies.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-9_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-1305
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from Drosophila ananassae.";
RL   Repbase Reports 12(3), 285-285 (2012).
XX
DR   [2] (Consensus)
XX
CC   ~94% identical to consensus. ~70-bp TIRs.
XX
SQ   Sequence 1305 BP; 406 A; 190 C; 207 G; 500 T; 2 other;
     cacagtggtt gcgcccgtag gccataaatc gaaaaatcga cttgaaaata attagtcaaa        60
     atgtaaagaa tttgtctcta aattgtccac attttgtcat tgcaaactag ttttttccgg       120
     aattctaacg ggacattcta aaaatggaat gcaaagtgtg aacacgtgtt caattttggt       180
     tttatgaaaa ttatctgact aattaaatat tattgtgtat tttatagcga ttaactcttt       240
     tttggctatt ttgtgaacgt ctttctcgtg tttagttaaa gttttagttg tgatgccacg       300
     aaatgccaca aatagtatgt attttaatgt gttcgtctga cttttagggt actgtatgcg       360
     taaaatcagc tgcagaaatt tgcagaagtt aatataaaaa aatactgcac catctagcgc       420
     ttgccaaggg aaagtttttc cttattgtgc ttttgttttg ttctcgtcgc tcgtgttttt       480
     aataattttt taaacatttt tatttattta tttcattgaa attcactttt caggagattc       540
     ccataagtgt gcattttcac gactatatat ttttaatctt tggtgtgcag aaggtggcac       600
     caacgttgga agattaaaaa aagttattga agttatgcaa gagcaaatta aaaaacaacg       660
     gttacacaaa gacataaaac aatatagaaa gcagaacaca cgaaaaatat ctcgaattgc       720
     cacaaatacg gatttaattc atagactact tttatcttct gatcctctta ttacaggact       780
     aaggaaatta ccttgcaaat ttaaatccaa tttaatgata tcaacgttag atttgttaga       840
     agaatttgat taactgttat gtttttctat gttttttgat ttaattgatg tttttttatt       900
     tttttttatt tgttatggct cctaatttgt ttacaaaatt gtctaattat taaagtattt       960
     gaatattact tgaaactggt acttatttat gtttacaatt tttgctatgg cagctgtatg      1020
     atatagtttt ccgatttgga ctatatttgg caagcatatw taaaactggt ccaagcatac      1080
     tatctggaag tttggtttac atatcttgaa aaacaaagtt tttcatacta tatacttatt      1140
     tctatcctat cgttcctatg gcagctatat gatatagacg tacgtatggt ccattttttt      1200
     actatgcatt tcaaatattt ttttagaatt ttggaaaaaa tttcacattg atatctcaac      1260
     ggaaagcatt takggccgcg gctccataca agcccaacca ctgtg                      1305
//
ID   Transib-9_DSuz repbase;    DNA;    INV; 3027 BP.
XX
AC   .
XX
DT   13-JUN-2021 (Rel. 27.01, Created)
DT   15-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-9_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-3027
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 120-120 (2022).
XX
DR   [1] (Consensus)
XX
CC   97% identical to consensus. 5-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           838..2622
FT                 /product="Transib-9_DSuz_1p"
FT                 /translation="MSVLTKCIGYICKKIXSFWTQYKRKKASVLEFQSNWL
FT                 NEKETILMKRTPSKPQEMIETAKRGRPKVDFSESSKRTKRRRIAELSITNE
FT                 SAACDLRSCNFQSNAMCSKANIDEVLSLLMEANLSKHQYFLIRSYVNSKTS
FT                 FDLFPSYGQLLKAKKLTYPDKITVSESKAEVELQSLVDHTARRIVKLQHDV
FT                 LESVGSDXSDNLILIGKWGFDGSTGHSEYKQKVCNKDLXDSSLFVTSYVPL
FT                 QLKTMENDPKDEKIIWKNPRPSSTRYCRPLRLQFAKETAQLAEDEEKYFKA
FT                 KIEVLNATPCNVSGKEIKIKHSLQLTMVDGKICSALSHTSSSKCYICEAKP
FT                 TEMNDLENCLKKKVNESRFEFGLSPLHSYIRFFEYFLHVSYRLDLKSWRVS
FT                 TPEGKQVLSTRKSQMQNDFRIRMGIIVDTPRSGGSGTSNDGNTARAFFKNP
FT                 KLAAEITGINEDIIIRCSILLQCLASGYKINAAKFGEYALDTARKLISLYP
FT                 WYYLPPSVHKILVHXPDVISYALVPIGELSEEAAESKNKDIKMFRRQHTRK
FT                 XSRIDTNTDLMHRLLLSSDPYVTGQRKLPHSKKSVLSASAFDLLDDLN"
XX
SQ   Sequence 3027 BP; 992 A; 512 C; 553 G; 938 T; 32 other;
     cacagtggtt gcgcccatag gacaaaattc aaaaaatcat aacaamaaaa atttkcgaaa        60
     agtaaccaaa tcgcctctaa aatkaccaaa cttcttcata gcaaaccggt tttttctaga       120
     tatctaacgg gactttctaa aaatagaatt gaagctgtga acacgtgttc atttgcaaag       180
     cgcatctgca cgcatmgcga atwtttcaca acaaaggcga acttcaaagt gttcagtcaa       240
     ctaattacgc tgcccaattt aaattatata aaatggattt tgaagttaaa ggtattattt       300
     ttaagwttca atattaataa aagctaamwt gtgttgtcgt tattttkaaa ttaattcttw       360
     actttattat atttttagta tcttttgtat tcgtgttttc tatgtttact aaaagtttta       420
     actgtgatcc cccaagatgc cccgattcat tttttattca gtgtatttgt caatatctta       480
     aggtataaaa aaagttaaag ctagctgcag atacttgcag atgtgtgcgt aatcaaccat       540
     awactaacac cgtctctttt tttcttcaag gtcaaagcag ctgttttgca ttgtagttgt       600
     gctgtgtctt tgtgttcgtc cttagtgttt watgtttttt wtaggttcaa attttaattt       660
     ttatagcgtw atwtctttat taatttaatt ttggtaggtg actcttctca ttgtgtcttc       720
     acccgcttgt acatattcaa ttgttggtgt acagtaatcg acaccaatgc agaaaaatta       780
     cggaaggcca tcgaacatgt gaaccgcaat attgaaaaca ttggctacgt gtccgakatg       840
     agcgtgttaa cgaaatgtat tggwtacatt tgcaaaaaaa ttkcttcgtt ttggacacaa       900
     tataaacgca aaaaggcatc agttcttgaa ttccaatcta attggcttaa cgaaaaggaa       960
     acaattttaa tgaaacgcac tccaagtaag cctcaagaaa tgatcgaaac tgctaagcgt      1020
     ggacgtccga aagtagactt tagtgagtca tcaaaaagaa ctaagagacg aagaattgct      1080
     gagctttcaa taactaatga atctgcagct tgtgacttac gatcgtgcaa ctttcaatca      1140
     aatgcaatgt gtagcaaagc taacatcgat gaagtcctgt cgcttctcat ggaggcaaac      1200
     ttgagcaagc atcaatattt tcttattcga agctatgtga actcaaagac ctcctttgac      1260
     ctttttccaa gctacggtca actgttaaag gctaagaaat taacctatcc agacaaaata      1320
     actgtaagtg aatcaaaagc tgaagtcgag ttacagagct tggttgacca cactgcgagg      1380
     aggattgtaa aacttcagca tgatgttctt gaaagcgttg gaagtgatts ctctgataac      1440
     ctkattttaa ttggaaaatg gggatttgac ggcagcactg gacattcaga atacaaacag      1500
     aaagtctgca ataaggattt gagmgattcc agtctttttg tgacatcata tgtgccatta      1560
     caacttaaaa ccatggaaaa tgatccaaaa gatgaaaaaa taatttggaa gaatccgcga      1620
     ccttcgtcta cacgatactg cagaccatta agattgcaat ttgcaaaaga aacggctcaa      1680
     ttagctgaag acgaagaaaa gtatttcaaa gctaagattg aagtgttgaa tgccacgcca      1740
     tgtaatgtgt ccggtaaaga aattaaaatt aaacacagct tgcagttgac catggttgat      1800
     gggaaaattt gtagtgccct aagtcacacg tcatcttcta agtgctacat atgtgaggcg      1860
     aagccgacag agatgaacga tttggaaaat tgtttgaaaa agaaggttaa tgaatcacgc      1920
     tttgagtttg gattgtctcc attacactcc tatattcgtt tttttgaata ctttttgcat      1980
     gtatcgtaca gactcgacct gaagagctgg agagttagta ctccagaagg aaaacaagta      2040
     ctttcgacaa ggaaatccca aatgcagaat gattttcgca tacgaatggg aattattgtg      2100
     gatacaccta ggagtggagg aagtggcacg tcaaatgatg gcaatacggc cagagcgttt      2160
     tttaaaaatc cgaaactagc agcagaaata acgggtatta atgaagatat tataatccgg      2220
     tgttcaatat tgctgcagtg tttggcatca ggctacaaaa tcaatgcggc aaaatttgga      2280
     gaatatgcac ttgatactgc cagaaagctg ataagcttgt atccatggta ctatcttcca      2340
     ccatccgtac acaaaatttt agttcatkct ccagatgtca taagttatgc acttgtgccg      2400
     attggagaat tatcagaaga agctgcagag tcaaaaaata aggacatcaa aatgtttaga      2460
     agacagcaca ccaggaagam ttctcggatt gacacaaaca cagatttgat gcacagatta      2520
     cttctgagct cagatcctta tgttactggc caaagaaagc tcccacattc aaaaaagtcm      2580
     gttttatcag catcagcatt tgatctactc gatgacttaa attaaatata tccwgttatc      2640
     atttattttt taaaattttg ttttcttttg ctataatttg tatttttgtt tattattatt      2700
     gttatgcttt tttcatgtaa tttacactta ataatccaaa ctaacggatt aatattggtg      2760
     ggcggataat aaaccactcc tcttcctctt aaaatattac ttaaatgtaa tawwacttaa      2820
     ataaaaaagt ttgaaactga aaatagcaac gcgtttgaaa tttggttcga tattttgtat      2880
     ggtagctata ggmtatagtc gggckatatg tccaattttt tttgctataa ttaaaatatt      2940
     tttatagaat tttggggaaa attttgaaac gatataacaa ctagaagtat ttttggccgc      3000
     kscccccata caggccsgac cactgtg                                          3027
//
ID   Transib-9_DTa repbase;    DNA;    INV; 3376 BP.
XX
AC   .
XX
DT   26-JUL-2021 (Rel. 26.11, Created)
DT   13-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome.
XX
KW   Transib; DNA transposon; Transposable Element; Transib-9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-3376
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6227-6227 (2021).
XX
DR   [1] (Consensus)
XX
CC   96% identical to the consensus. This family liklye mobilizes
CC   Transib-N6_DTa.
XX
SQ   Sequence 3376 BP; 1143 A; 555 C; 585 G; 1025 T; 68 other;
     cacagtgggg cgcctagaac aaaaagcctg ccaaaatgtt tttttttttt taagattttc        60
     caaaatgttg aaatgcaact ttaaaaacaa ttgaattctc tatacaaatc aaaaggaaag       120
     agtgatctgt gatgaatggt tctcccacta cagattttta aagtwtattt ttcgaaatat       180
     aattttagcc aacaagaaaa aaaggtattt ttacacatct ttgaaatttt tctgaaagct       240
     cccaagggcc taagttgtat atgtaacgat tgaaatttta agagcaacca attcttaaaa       300
     tattaaaaaa aaaataaaaa ttttagatac ataattacta ttttttttta attttttaaa       360
     agtggtccaa aaaaattggg tttttttgga tattcttgga cgtaaagtag tgttacaccc       420
     tagatccccg tttaattctt ttttttaaaa aaaagtttag atatttaact acattttctg       480
     aaaaaattag cctgcccttt tgtgcctctt ctgagaaaac cgcggttaaa gttagcaaga       540
     aatttacgta atttgaatag ttgccagccc tgggttctcc gcgcgcactt acagcatgaa       600
     tccctagttg tattactagt cagctgtttc caattacttt tgttttcctt tcgcggcaag       660
     ctgtccaatt attttgtatt atcaaattta aatccaatta taatggaaag tgaagccgga       720
     ggtatttata ttgtgttcgt ggcgttaaat atattcttac taatgtgctg tattcgtgtt       780
     ttagagctat tgtgatgttt tagaagtgtg aaaaattgtg atttatcttg tgggtaaaat       840
     tgaatgtgat acatggttaa atgagttgat acctttttaa aacagaacta tcaactgctt       900
     ctctcactcg ccgagagctw tttaacatca tgcagaggtc cacgtacgak tcgtttgagg       960
     aaaagtttca gcacttggaa amgtctttat gcgaccaaac tagggcaaca gggcwgagct      1020
     tggaaagtct aaatgaaaaa ctgacaaggt ttatwtcaca atttaagact cgctggactc      1080
     gagcacatag agtggaggam cgttttctca aggcaaatca sgsttggcta gatacaacca      1140
     ttmatttctt tgtgagctta gacgaggacg caacgagaaa tcktttgaag aatccaccaa      1200
     cmgaaccaag cttagaaaaa cccaggactt gagggaacaa cattcttcga ctgtgctagc      1260
     ttttgctaag ctkagatcag aaggtcatgt tgaagaatcc aagcttgtat ctgcagtatt      1320
     caataaagag acttttgtaa ggccgcaaga tgacaaaatg tccamagagg aagcastggc      1380
     agtattggtc gaggcacgac tttctcgatt ccaatacaat gtggtccgag attctgctcc      1440
     agatagattc ccgtcgtact atgmtgtcca actagcgaaa aaagagtgtt atccagaaag      1500
     catkgctata agtgagwcag tggccawagt tactctccaa gccctgacka atcacactgc      1560
     tcagckatta attcacttag aaaaacgcaa gattgsmacw ctaagsccga gtcagatgag      1620
     gaagtggkgt tttgatggwa gttckggaca cagttcctat aagcaagctt ttwgcgatcc      1680
     sctwcagatt cctctmtact catcacttcc atagtcccaa taaaawtgac atgtgaagaa      1740
     tatgtttwat ggcagaaccc acgtcmcggc tcaactcgtt ttgcagacct ttaaaaatwg      1800
     aatwcataaa ggaaacttca agtgtctcgc aggcggagaa tgawmgagtw aatgcagaaa      1860
     tcagtmagct agmtaaaaca gctgtggaca tagaaggcaa tggtgttgag gtgagccaca      1920
     cactawtwct ttcaatgatt gacggcaagg tgtgcaatgc matcacagaa gcmacatcaa      1980
     cwcgmacatg ctatttatgc ggctcaacga gcaagcaatt taataacata gataatatgt      2040
     tatggwtgga tackcttttt gaatgtcttt tacatgtwtc ttataaacta cccattaaaa      2100
     gatggcaagc aaggtcggtc gaggacaaag atactkttga cagtaataaa ammcgtattc      2160
     aaaacgaatt caaaaswaac tgggcttact aktcgatgtw ccgaagcctg gatttggaag      2220
     ttcgaaatgk taaactkctc ggagattttt taaaaatgct gagaagtctg cagaaattac      2280
     acacttagat gtggatttaa taaaagaaat gcacaccatt ttgatcgtag tttcaccaat      2340
     gaagaaattg aaatagaaaa attagagaat tcgctataaa agctagacat tttgtgaagc      2400
     tatatccgtg gtataatatg cctccaactc tgcacaaatt tttcattcgt ggtccggaaa      2460
     taataagcca cgctttgcta cctattggcc aattaactga ggaagcacag gaagctcgaa      2520
     acaaggattt taagcatttc cgagaacaca attccagaaa agctagtcgc gaaaaatcaa      2580
     accaggatgt tttcaataga atgcttgtaa actcggatcc tatwatttcc agttatttca      2640
     aaactcctca aaaaaaaaat tgaaaaaatg ccagagtcgg ctttagctct tataaaaagc      2700
     cttccctgtc ctaaaaataa atattcgacg atttttgact gctctgacag tagcgatgaa      2760
     gatgaawatg aataaaaaat tgaaattata atttaaattt sttttatttt gttgaaaata      2820
     taaatataaa cggaatatgt tatcgagata taatcaaaaa cgtgatttat accmatttwt      2880
     gatttatatc aaaaacgtga tttawattat gcaatatttt cttgacagaa attacaagaa      2940
     taagaattaa gaaattacaa accaatttaa aaaaaatctg aacattgacg taaattgata      3000
     aataatgact taatccaaat ttacataaaa aatatgaaat agaaccgata tattcccttt      3060
     tgtactaagc gtttatatgg cagctataag ttatagttga ccgatttgaa taattttttt      3120
     ttttwaaaat caagttaaat taaaaaaaat attgggaaac ttagaaccct ataactaatt      3180
     tatttatatt tttttcttaa waaaacaatt ttttttttct taaaaatttt ctacaacaaa      3240
     aaaattgcac taaaaaaatt caccttatga tgttttttta catatttaat tgcctttaag      3300
     aatgcctcat caaaagatat tcgctatagg gctccgctga tttaaggcag acttttggct      3360
     ttttcgcccc actgtg                                                      3376
//
ID   Transib-N10_DTa repbase;    DNA;    INV; 1221 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N10_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1221
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4690-4690 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1221 BP; 408 A; 182 C; 202 G; 429 T; 0 other;
     cactatggtc cgagcggccg attttttggc ataaagtcga aatttttatg ttaatgtttt        60
     gtatttttta ttttaaattc ttaaagttaa tagatcatac atatacaaac ttaaaaaaaa       120
     aagctttaaa agctacacta acgcttttta tgagctttca aaagtacaca atcgatcagc       180
     tgcttaggac taagaaattg gcgccataat attttcttta cgtttgtgca aaaaaataaa       240
     acttctttgt cccgactaaa ttaagtaaat tatggaaatg aaagatcaag gtatgtaata       300
     tttagtgtgt atagtacatt tatgtgtaat cttagtgttc gacctgtgtt taatttccaa       360
     tttatgtgta tttttataga aaattaatat ttgttccctg tatttagtgg gataaaacta       420
     acgacccgac gtctgcccac aaaaactaag tacgccagtt tgtacatata catgtcgttt       480
     ttcagcgcta attaacacct tttccccgtt cgtccccctt ttcacgcaat tccacactat       540
     tcagggacct taaagtttct tcgtagcgat ctctaggata tttggcgcag caacaatcga       600
     aaatttaatt tttttcggat tgcatttctg taaaaattat caattaccac ttaaaagatg       660
     ataaaacatc aaaaataaat ttaaaaaagt agttattttg aatccttcct tgttaagcat       720
     tcgtaagaga aagaaaagga aatgtcttcc tttgcttata attccgttaa aaaaattaca       780
     aaaattattg tgagtgtggg gtttgaaaga tacagagttg cactttttaa atgttttgag       840
     ttacattaca tacgaagaat ccgttcgtct gcaaaatagg ttcaaagttt gccaaaaaca       900
     gaatttttcc aactttagtg tccttttttt tagaatcctt gggtgtgaaa attttttcga       960
     gagcacattt agagcgctga ttatttaaag caaataggac ttttaagatt tcatcgaggt      1020
     atttaaaaaa aggttaaatt ttataacaca gtgtagtatt atgaatttgc ttgtatggga      1080
     ggcaaaagag ggcgtggtcg cacagactca aaaatttgtt tgcatactat tctttgtaaa      1140
     aaaacagaat gtgtaaagtt tgaagtctgt gactcaattt ttagagttta tgccaaaaaa      1200
     atcgactttt ggaccatagt g                                                1221
//
ID   Transib-N11_DTa repbase;    DNA;    INV; 1195 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   08-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N11_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1195
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4691-4691 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1195 BP; 360 A; 179 C; 202 G; 452 T; 2 other;
     cacagtggtc gctgccatag gccaaaaatc aaaaaattga ttttgagata ttccagcgaa        60
     aaccggttct acgatcagct aattgtmcaa gctttataat acaaaagttt tttttttgaa       120
     tttctaacgg gactttccaa cactgggatg caaagtgcga gaacgtgctt acttactttc       180
     aatttgtcaa cagtgcagtg caacgaagtg attttaaaaa attctaataa attataaagc       240
     acggtttaac cccattcaaa tataatggac attgttcata acagtatata ctttgtttat       300
     acagatacat gaattaataa cttgtgctgt gttttgcgta aatacgtggt aaagtgtgcg       360
     tcctatttag ttcgtaaatg ttgtgcgtta caatgtttta ggtaaagttt taagtgcttt       420
     tccccggttt tcccmcaatg atgtttatat cctgtttttt attaatattt caagattata       480
     aaaatgtttt gtccagctgc cgaaaggtgc cgatgcactt gtggcattaa aaaatgcaac       540
     ctaacctcat ttattttaga acctttttct aggaggaaga tcttttttgt tatgtgtgtg       600
     ctgttgttgt agcttgtttt tgctgtttct tttgtagctt tttggttggt ttttgattgg       660
     aaagcttttt aaaggagccg ctgaatcaaa aattaaggat atttaataat tcgactgcaa       720
     atatagattt atttaacaga ttgcttttaa gttctgatcc ttttattaat ggacaaaaaa       780
     acttagttat aaccaaaagt caactctttt agagtcaact atttcgctac tcgatcaaaa       840
     aattttaaaa tgatattaaa tcttattatt gttcgttttg tttttttata attttttttg       900
     gtgctggtgg agttcagtaa tcactcccac atttttatat tgcagttcta agtttgtaaa       960
     tatcgtacgg taaacaaacc aacttgttat tattacaaaa atttaatttt tgatttccct      1020
     ctcatataaa tgagaaaatc gttcctatgg aagatatagg atatagtggt acgatctggc      1080
     caatttttgt aacataaatt tataatattt atctagattt ttggtaaaag tttcatggcg      1140
     atagcacatc tagaagtatt tatggccgcg gctccataca agcccgacca ctgtg           1195
//
ID   Transib-N12_DTa repbase;    DNA;    INV; 896 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   11-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N12_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-896
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4692-4692 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 896 BP; 305 A; 131 C; 139 G; 319 T; 2 other;
     cacactggtc gaaatgacca atttttttgc ataaaatcaa aattttcatg gtaaaatata        60
     ttgaattaac tttaatattc ttataatata ttgtttaact acaaacaatc gataacttta       120
     ggttgaatat ttgcaacctg aagttttgct agggccgcaa agttcgttga ccgatcagct       180
     gcttgcaagc aaaaagaagc ggcaaatagt taattaagtt tgacaattcg ctatttttaa       240
     ttttgtgcac caatttgaat aaaaaaaatk gataatattg ctcaaggtat gtagattata       300
     ggttaaatcc attatttgaa tatatgtgtt atttgtttat attgttaatc gtttttgtat       360
     tgtcttaaag tagtatattt ttaaccaaag tgtccgtgtt ttgtggaata taactaatct       420
     gctatgactc gctatacaaa agtaagtctg caacagtatt tktaaatata tatattatac       480
     gaattcatta attgtatttg cccgttcctg cccgttctat ctttcccctc cagctaaaga       540
     caaggttaag ttcagtccta gcacgctgct cgacatttgg tatcgcaata acctgagtaa       600
     agaagctata tttaagcagt ggaaaattaa aaatgtaaat attgttgttt aatttactaa       660
     aatataattg ttttctatta caaaaaacaa aaagaaaaaa aattaccttt cttttactca       720
     tttagttaac actgcgcttc gcaaaatatg ggcggtaaat gtaggcgtgg ccagatcaaa       780
     ctgaaagttt gtatatatct ttataatgat cttattatca aatgtgccaa gttacagcgc       840
     tctatgaaca tttttggaat ttatgcaaaa aaaaattggt cattccgacc agtgtg           896
//
ID   Transib-N13_DTa repbase;    DNA;    INV; 1016 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   12-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N13_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1016
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4693-4693 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1016 BP; 374 A; 149 C; 143 G; 350 T; 0 other;
     cactatggga aaaaagtcaa tttttttggc ataaaatcaa cttattttac aaattatttt        60
     taaaaataaa atatattttg tgaatttaca taccctaatt agccaagaac agttatctaa       120
     gattttttac tagcaacact ataaggttga taaacgaaca aagtcagctg tttgattgac       180
     tttgttgtgt gcgtaaatta gtgaaaaatc tttgcaaact ttcagtgctt attttgtgga       240
     gcaacaaaat ggtttattat ttctgatcat gtcaaatcgt agcaaaggta tttataaatg       300
     tatcttagat tacatgtttt gattattgtg gcttgttgtc caactgtgaa ctgttttaaa       360
     tgtgtatctt tttagcttaa aactaacaag tttgtttgtg ttccgtggtg tacaacttat       420
     aaatggcaca aagttgcaaa aaggtaaaaa cgcaaagtta ttaccaaatg tatccttaat       480
     atcgcaaaac taatcatttt tgcaactttt tgcacgtttc ttaaaaaaaa tgacttaaat       540
     ccagcaactt ataaacataa aaaaaaattt ttttaaataa aaaaacaatc taagtggctt       600
     tcattaatct taaaaattga attcatggaa agggacaagt caagtgaaaa tcctggctgc       660
     aaaggactca aatataaaga agctggaccc ccgttaaagc taaaattggc atctgctctt       720
     agataatatt tcacttttct tgtacatgtc accaattttt ttttttgaca aattttaaaa       780
     attaacgtaa accgaaatta ttttaccgtc ttaccaatac aaatacaaat tttttaaaat       840
     ccctgccaat taatttgaat atgcggcgtg ggcggtggat gaaaacaatg gtccgattca       900
     aaaagcaaca aaaaccgaaa ttacagcttt atcttaatag tatatataca aaatttctaa       960
     attgtatctc taaaactaga gtttatgcca aaaaaataga cttttttccc atagtg          1016
//
ID   Transib-N14_DTa repbase;    DNA;    INV; 1034 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   13-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N14_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1034
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4694-4694 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1034 BP; 357 A; 141 C; 184 G; 352 T; 0 other;
     cactatgggg aaaaagtccg tttttttggc ataaacgcaa aaaataaaag ttactaattt        60
     aaaaaacaaa tattttattt taatagtaaa acggttaaac ttattagaac aatttaaaaa       120
     aaaattttac gtgccaccga taatttgttg tagcctatca aagtctatcg attaacgtgc       180
     tcatctctaa gaaaaaagcg cgctaatttt actccaaagt ttcccatcgt cgtgcaaagt       240
     gttcagaggg cgaaaaaata aacaaaaata tggaaaattt acgtcaaggt atgcttaaat       300
     acttctcaaa acaaattgtg ttgtaactgt ttgcattgtc ctgttgttta atgtcttgtg       360
     tatgtctctt ttagccgaaa actaacaaaa gttattgtgt tctgttaagc tttagttaag       420
     aatctacgcc gatcgacgca aggttgtaat ataaatgtat taacaaaatg ataaagaaac       480
     aggtgttatc attgcttttt gcccgttttt gccccttttt caataaatca ctgtttagct       540
     gcatatgaat tccgatgtta caaacgatat tgaaagtacg gaggaagacg aagatggtga       600
     aatcaatttc tttgatttgg atagtgttta tttggaagca gaacctgaag aagaatgatt       660
     gaagttggtg tctaggtatg gcaaacacac cataacacaa acccaatttt ttaactttct       720
     tgcttgtttc agagagtttc gatggagaat aattaaattt tattttatta atattatatc       780
     ttacataagt tatctatata aaaatgtttt ttattaataa aaaaaatatt cttacaaatt       840
     tttagggggt tgaccataat ggggaggtgg tgggtgggtg gctgtgggtg gtgtttttac       900
     aaccgtaagg ttttttcaaa aaatggaaaa aaccgaaatt ctatttgtgc ataaggagta       960
     tatattataa ttttcaaggc cctatcttta aaactagagt ttatgccaaa aaaacggaat      1020
     ttttccccat agtg                                                        1034
//
ID   Transib-N15_DTa repbase;    DNA;    INV; 1146 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   17-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N15_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1146
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4695-4695 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1146 BP; 355 A; 184 C; 192 G; 415 T; 0 other;
     cacagtggtg gcgcccatag gccaaaattc aaaaaatcga cggaacctaa aatgggccaa        60
     gggtatgcaa cttttctcta aaatgcccaa gctttttcgt ggcataccag acatttctgg       120
     aaaaatatca gtaccttcta aaaatcgacc taaagtcgtg agcacgtgtt aagtagcaaa       180
     gcaaaactgg gcgcatcact aatttttcgc agcaacatta aactttgaaa ccgtgtattt       240
     cttatatttc gtgtccaaat taatattctg tgatatggat ttttaagttg aaggtattat       300
     ctataagtcg agatgtgtat aataatcgta cttgttaaat tgttttcgtt acatcaattt       360
     gaaataatac atgttttgtg tctattttgt gaacgtcttt tttatgttta gctaaggttt       420
     tagcgatgat cccacaaaat tccacaattt gttggtatgc caattttttc gtctgggttt       480
     caggtaacat gtgtgttaaa attgactgca gaaatttgca gatgtgccca caatcgtaaa       540
     aatactaaca ccttcataaa tttttcaagg gcagaactgg ccgaaaaaca aattttttgc       600
     cgctttttac ttgttgtgct gttcctttgt cttcgtcttt cgtgattgtg aatagttttc       660
     caacactaaa tattgaatta ctaatagatt atattttttt ttttttttat tttgtcatat       720
     taaagctagt atacaatact aaaattaatt aaaaaaaaaa aacggcacat gaaactgaag       780
     tccttcggcc aaaaaatgat attaaatcgt atcattgttc gttttgtttt tataattttt       840
     ttggtgcggg tggagtttag taattactct cacattttta tattgcagtt ctaagtttgt       900
     aaatacgtac ggtaaacaaa ccagcttgtt aatattacat aaattgaatt tttaattgcc       960
     ttctcatgta aacgaaacta ctcagaaaat cgttcctatg gaagctatag gatatagtgg      1020
     tacgatctgg ccaatttttg ttacatatat ttataatatt tatttagatt tttggtaaaa      1080
     atttcatagc gatagcacat ctagaagtat ttatggccgc ggctccgtac aagcccgacc      1140
     actgtg                                                                 1146
//
ID   Transib-N16_DTa repbase;    DNA;    INV; 1029 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   07-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N16_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1029
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6152-6152 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1029 BP; 364 A; 142 C; 146 G; 377 T; 0 other;
     cactatgggt aatttaccca ctttttttgg ccaaaaccca cttttaaaaa gtcattagaa        60
     attggatttg tcaatcacaa tgtattagga taacatgaat gtcaaatgtt attaacagaa       120
     aagtttaaca gtgcgcatca ctgttaagtt atcagctatg aaagcttgct agtgcttcaa       180
     cgagatggca gcgctagtaa atcgcttatt ttgattaaaa gtttaaatga tcaaaaagag       240
     tataataaag caacgcagcg ccttttttga aatgcagttc aatcacaaaa tcatgtaact       300
     tttttttgtt agcgttccga tgtatttatt gattgtggtg tttctaaaat cttgggtaaa       360
     atctaacttc aaaaaacatt aaaattggta ttgaattttt atttttaaat ggagctacaa       420
     aatgagtcca gctctttcca gctctgaaac cttttttatc ttgtcgagta cttgattctc       480
     tttaaactca gtaagtataa aagtgcactt ttgcgcactt tctctgaaat aaatgtttta       540
     agacctccgt caaaacatga atatttcacg tatttttgta tcgtgaatgt cagttacggt       600
     gcaatctttg caaaaccggt atgcaactat ctttgttgtt aaatattcat tatttcaaaa       660
     ttatgtttca tcattgtttc attgcaataa ctttgttata aaggttaaca gtatttttgt       720
     tagaaattat aatggtaata attataaaaa taaaattgca attcaaaaat acaaaaatga       780
     aaaacgttga tattttttaa aaattaaata cgttgttatt actaaaataa attaaaaaat       840
     attttttttt cttcacgttt aggagaaaaa aatgtttttt ctttaaaaaa aggcgggacc       900
     acgcctattt tttcaacaaa aattccttta aatttaatat agtaaaatca aaaaaccgaa       960
     ttgttaatta ttgggtcgtt tttaagttat taattaatgc cacaaaaagt ggtcaaatta      1020
     cccatagtg                                                              1029
//
ID   Transib-N17_DTa repbase;    DNA;    INV; 1047 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.11, Created)
DT   15-SEP-2021 (Rel. 26.11, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N17_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1047
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(11), 6179-6179 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1047 BP; 365 A; 149 C; 175 G; 357 T; 1 other;
     cactatgggg aatttgacca ctttttttgg ccaaaaccca tttttttaaa gtcgttaaac        60
     taaaattgtg ttttctagaa tactttaaca gaagaccaat cttcaatgtt acgtttcagg       120
     aatttcaata gaggccgcct ctgctaactt acagctgtta gatcagctgc tgtatgttgc       180
     attttcacgc ctcagaaatt tgacgcaatg ctgagactat ttaattgcta aaaataagag       240
     tcttaaagca atttaagtgg agttttttga attaattcaa gggatggtag tgtgcactaa       300
     gtatttgtgt gattaaacaa tctaaattaa tcgtggtttt cttgtaatcg attgtttttg       360
     tgaccggtct aacatgaata tttttaaaga aaaccaattt ttaaatagag atacaaagcg       420
     agtccagcgg agtccatcca tcaaaccttt gggaattaaa gattaaggaa ttctctttaa       480
     aatgaatgta gtcagaaaat ccactttttt cgattcttgg agaaatttag ttttttagat       540
     cataacctca aattttgcaa atgccccttt gtttgcactg tggaagaaag atatcaatag       600
     acatacattt gaaatgtctt ctaaagtaak gcaaaaacaa ttatcgctac catttgacaa       660
     taaaaacgga cttaagaggt tgtaaaaaga aaaataaagc tataactgta tcaaaaaatg       720
     aaagaaattg catgtaaact cagagaattt tcggttctat gaaactaaaa gaaatattct       780
     tccgatttta acaaaaattt ttatgtggtt ttaatattgt attaaaacgg tacttatcaa       840
     gttttatgca tttatctcta aaaatagcaa agttgatctg atcattccta tggcagctat       900
     atgatatagt tgtctgatcc gaaagatatt catgcagaat atgcgttgtg attaataata       960
     acgattgcta aagttttact ttgatatctt taaaattgag ggagttatta atattggcca      1020
     aaaaaagtgg tcaaattccc catagtg                                          1047
//
ID   Transib-N1_AAe repbase;    DNA;    INV; 2278 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2278
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1309-1309 (2011).
XX
DR   [2] (Consensus)
XX
CC   >99% identical to consensus. 5-bp TSDs; usually CGNCG. TIRs are
CC   950 bp long.
XX
SQ   Sequence 2278 BP; 795 A; 357 C; 348 G; 778 T; 0 other;
     cacagtggga cggaatcaaa aaaagtggga catgtgggtt tgcgccaaaa ctatcggttt        60
     tagcgttttg gtgtcttctg caatgtttct tctttttaaa agtactttat tatagaaata       120
     aaaaaaaatc gttttcaatt gtatacactg agaaaaaaaa attaactttt ttattttttc       180
     tcaaaattga aaactaccta aggaagtatt gtaggtaacg tcatttgaag aaactttgtc       240
     gaagacgaaa aaattctagc tctcatactt actaagttat atggtaaaaa tgatgttaac       300
     ccccttaaaa atgatttttt tacaatatct tttttatatg atttttttaa tttttacaat       360
     gttctacaat gttgtagata ctccaaaaat acacattttt gctgaagaga ctaaagcgct       420
     atctcttatt ttgaaagagc tatgaactat ttcttctttt ttatacgtca cctttaaggg       480
     ttaacagctt gcaaagttgc aggtagtagc agttaatttt gacgttatac tgttcagtaa       540
     cttacacact ttcaaaacat atatgaacca gagcgggatc caatgggatc aataatgttt       600
     tttaagttta acgatcttga tgttataaca taatattgca gttttcaaca attatgatgg       660
     acatattatg cttctgaata attttatatt gcttttgagg ttcatatgta ttgcaaaaca       720
     atagtaagca attggtttca atattggagt acctttttta actcatgtta gaatattgat       780
     ttattttcgg agatgtttcc ttcatccaaa tttagttcat atttgttcaa caaattcatc       840
     gaattctaat attttcttct gctggagtta taattaaagc tcatttaaat cattttcttc       900
     ccaatcttca tcgtcggagg aatttgacca atcgttgtga gaaacatctg ctcagctata       960
     tgtaaagcat tacgactggt acaaaatgcc atccagtgtt caccgtgttc tgattcatgg      1020
     cgctgaaata gtcagacatt gcatcgttcc agtcggaact ttatctgaag aacctcaaga      1080
     atgtcgaaat aaggacatca aaagttttcg cgaaaatcga tcaaggaaat gctcacggta      1140
     aacttttcaa atatttatgt cttctcaaat aataaagcat acttttcttt ttaacagtgt      1200
     agcaaccaat caggacattt tcaaccgcct catggtatct tcggatccgc tgatttcatc      1260
     catgcgaaaa attccaaaga ggaaaagtat tccgtttcga aaagaagtat tggaatgttt      1320
     gaaagaacca gatgtttctc acaacgattg gtcaaattcc tccgacgatg aagattggga      1380
     agaaaatgat ttaaatgagc tttaattata actccagcag aagaaaatat tagaattcga      1440
     tgaatttgtt gaacaaatat gaactaaatt tggatgaagg aaacatctcc gaaaataaat      1500
     caatattcta acatgagtta aaaaaggtac tccaatattg aaaccaattg cttactattg      1560
     ttttgcaata catatgaacc tcaaaagcaa tataaaatta ttcagaagca taatatgtcc      1620
     atcataattg ttgaaaactg caatattatg ttataacatc aagatcgtta aacttaaaaa      1680
     acattattga tcccattgga tcccgctctg gttcatatat gttttgaaag tgtgtaagtt      1740
     actgaacagt ataacgtcaa aattaactgc tactacctgc aactttgcaa gctgttaacc      1800
     cttaaaggtg acgtataaaa aagaagaaat agttcatagc tctttcaaaa taagagatag      1860
     cgctttagtc tcttcagcaa aaatgtgtat ttttgaagtt tctacaacat tgtagaacat      1920
     tgtaaaaatt aaaaaaatca tataaaaaag atattgtaaa aaaatcattt ttaagggggt      1980
     taacatcatt tttaccatat aacttagtaa gtatgagagc tagaattttt tcgtcttcga      2040
     caaagtttct tcaaatgacg ttacctacaa tacttcctta ggtagttttc aattttgaga      2100
     aaaaataaaa aagttaattt ttttttctca gtgtatacaa ttgaaaacga ttttttttta      2160
     tttctataat aaagtactct taaaaagaag aaacattgca gaagacacca aaacgctaaa      2220
     accgatagtt ttggcgcaaa cccacatgtc ccactttttt tgattccgtc ccactgtg        2278
//
ID   Transib-N1_CQ repbase;    DNA;    INV; 1011 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Culex
DE   quinquefasciatus - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1011
RA   Kojima K.K. and Jurka J.;
RT   "Transib DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 632-632 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >95%
CC   identity. 457-bp TIRs. 5-bp TSDs are usually CANTG; indicating
CC   it is a non-autonomous Transib element.
XX
SQ   Sequence 1011 BP; 322 A; 191 C; 185 G; 312 T; 1 other;
     cagtgggcga aatggaaccc aaaatcggac ttaattgaac gcggctggtt ccctggtatg        60
     aawaatagtg tttcttatgt aaaaaaatcc ggggaatcga ttggtgatgg tttcatccac       120
     cgcacgaaac ggcaaagggt ccattttgcc ccaattcccc attttttaac attttttctt       180
     gaaaatcggt ctgtatttag agcggaggct ttatgcggcc ttccaaaatg cacttaactt       240
     atgtgaaaat gtcccaggaa tccagtaaaa ataaccactt gcaccgcaaa aatcatctag       300
     ggtccattta accccaattc cgctataaaa gcatttttgg ccgttttcaa atgttaggtc       360
     agattttaaa aatctgaaaa tatttttatc gtaaagatca gacaatttta cataagaatg       420
     acgatttgca cttgaaagtt tgacacattt atgttgatat agaaattaaa ctaaataaaa       480
     agattgaaga atcactttcg ggccaatttt cccaaacgca gaataaactg cctttcgcat       540
     acattttatt tttatcaaca taaatgtgtc aaactatcaa gtgcaaatcg tcattcttat       600
     gtaaaattgt ctgatcttta cgataaaaat attttcagat ttttaaaatc tgacctaaca       660
     tttgaaaacg gccaaaaatg cttttatagc ggaattgggg ttaaatggac cctagatgat       720
     ttttgcggtg caagtggtta tttttactgg attcctggga cattttcaca taagttaagt       780
     gcattttgga aggccgcata aagcctccgc tctaaataca gaccgatttt caagaaaaaa       840
     tgttaaaaaa tggggaattg gggcaaaatg gaccctttgc cgtttcgtgc ggtggatgaa       900
     accatcacca atcgattccc cggatttttt tacataagaa acactattat tcataccagg       960
     gaaccagccg cgttcaatta agtccgattt tgggttccat ttcgcccact g               1011
//
ID   Transib-N1_DEl repbase;    DNA;    INV; 1221 BP.
XX
AC   .
XX
DT   01-JUL-2021 (Rel. 26.08, Created)
DT   01-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1221
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4041-4041 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1221 BP; 424 A; 207 C; 191 G; 399 T; 0 other;
     cactatgggg ccaacgacca cattttttgc ccaaaaccca ttttttaaaa gtcgttaaat        60
     atattttttt ttaatcgcga tggatagaaa taatcctaat cttaaatgtt gcaaacacaa       120
     aattttaaca gagcgcatta ctgttaagct atcagctgtc aaagtcagct gtttgtgcaa       180
     cttgaagcga gcgctgttaa gtcgtaaatt tttcttccaa atttaacact aaaaaagaag       240
     caaaaaaacc aattcaagtg caattttttg gcatgcagtc caacaatagt ggtttgtaat       300
     atgtgtttgt aaacgtgaat tgtagttatc gattgtgacg tccctgttat tttgtgtaag       360
     ttataacccc aaaaaatata aaagcttgta gtgatttgtt atttttaaat agagctacaa       420
     agtgattcaa gcactttcaa actctaaaac ttgttacata ttgtagatta ttcaattact       480
     tttctattct gttagtataa aagtgcactt ttgcgcactt tttctgaaat taaacttttt       540
     aggttctaac ctcaaatttg caaactccga gttttttaac atatggaaag cagaggcgac       600
     aaagagtgca aaggagattg ccatcttcga atttttgaaa gcgttaatac gttgtccttg       660
     ttccaagcaa gatgaggcaa ttttgtttaa aaaaagtcaa agcctttgct acaatgtaac       720
     acagaagggg gcaaagtgca aaagaaactc aaaccttttc agccaaaggc attcttcttg       780
     gctaaggaaa cgaagcgaca gaaatagcat ccctgcaggc gggcaatgct agataactaa       840
     ttcaagctgc aagtgcagct ttattaaaac gaaattatag atttctttat tacagagttt       900
     tttaaacttt tttcaataca attactgcgt ttgctctgaa aataacttct cccaaaagaa       960
     aaaaacctgt tatatcctaa caaaaaggta agaccacgcc catttttttc caaccgtgta      1020
     ttttttttat cattatcttc tgaataaaaa aaaatttttg tttagtattt agcaaaaaaa      1080
     aaaaaaacct aaaaaagggc gtaacctcgc ccattttttt ttcgtatcat agactaaatt      1140
     taaaaaacaa aacccgtgaa aattgcttcg tttttaagtt attaattaat gtcacaaaaa      1200
     gtagtcgttt gccccatagt g                                                1221
//
ID   Transib-N1_DM repbase;    DNA;    INV; 514 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Transib-N1_DM is a nonautonomous family of Transib transposons.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_DM.
XX
NM   Transib-N1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-514
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib-N1_DM is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. Transib-N1_DM is a relatively
CC   old family: the consensus sequence is ~16% divergent from
CC   Transib-N1_DM copies present in the sequenced portion of the D.
CC   melanogaster genome. Transib-N1_DM elements are characterized by
CC   5-bp target site duplications and 36-bp terminal inverted repeats
CC   (4 mismatches).
XX
SQ   Sequence 514 BP; 169 A; 76 C; 83 G; 177 T; 9 other;
     cactatggga aatttgacca ctttttctgg ccaaaattaa taactccaga acggagaaag        60
     atattaagat aatttttttt gcattgggtt ayactagcac atatctttta tgacattatg       120
     actttgactt awgtctttat cacaaaaata ttttagtaag ncracttaya tttttccggt       180
     attaagggga taacacgatt tttttttagt antttgacag tcacaaacac ataatacaag       240
     ccacactgaa tacaaytcat tttgcagaat aaaaaaaaac gctttggttt aaaagatatt       300
     aaaatatttg tatggaggga aaaacttrtc gttgcagacc tktttttgtg cgtgcaacag       360
     ctgatttctt tgttgtggcg ccatctatat ttatttctgg tatgcagaac taaacattgg       420
     tcaattatga atgcatgcat ttaatattat cttaatcgac cgactttcat aaaataggtt       480
     ttggccaaaa aaagggggta aatttcccat agtg                                   514
//
ID   Transib-N1_DSuz repbase;    DNA;    INV; 1033 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   15-JUN-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1033
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 84-84 (2022).
XX
DR   [1] (Consensus)
XX
CC   99% identical to consensus. 5-bp TSDs (mostly CNNNG).
XX
SQ   Sequence 1033 BP; 355 A; 149 C; 139 G; 389 T; 1 other;
     cactatgggg aatttgacca ctttttttgg ccaaaaccca ttttttaaaa gtcgttaaaa        60
     ataggttttg tttatcagaa tgcatcacga taacatcaat atctaatgtt actaacagaa       120
     aagtttaaca gtacgcacca ctgttaagtt atcagctgtt aaagcctgtt tttatttcaa       180
     cgaggtggca gcgctggtaa agcgcctatt attcttaata gtttaaattg tcaaaaagtg       240
     taaaattaaa catagctctg aggtttttga aataccatcc aatcagaggg acttgtaact       300
     tgtgtttgtg accttaatat tgtatttatt gattgtggtg ctcgtatatt cgtgttctag       360
     ttctaacctc aaaaaaatca aaatctttaa gttaatttgt atttttaaat agagctacaa       420
     agtgattcca gcwgtttcca cctctgaaac cttttttatc ttgtagagaa tttaattctc       480
     attgagctcg gttagtataa aagtgcactt ttgcgcactt tctctaaaat ttagctttaa       540
     agacctctac ctaatatggt atattttcct catttttgtc tggtaaatgc cagtttcgat       600
     gttatcttaa gaaaaacagt gtgcagttat atttcttatt aaataacgat tattttaaaa       660
     ttattttaca acatcatttc acttacttaa cgttgatata taggatttta gtatttttgt       720
     taagaattat agtgatcaca atacaaaaaa ttacaatttc actaaaaaaa tgggaaataa       780
     aaaaaggcaa aatttttttt ttaaatcagt ttggtctctt aaaaaaaaat tcaagaaaaa       840
     aaattttttt tattttattg acaagaaaaa aaaatttttt tttcttaaaa aaaaggcggg       900
     accacgccca tcttttttta atttacttcc tttaaatttt atatacttaa ttctaaaaac       960
     aaaactttta aatgttgctt tgttcttaag atattaatta atgccacaaa aagtgagcaa      1020
     attccccata gtg                                                         1033
//
ID   Transib-N1_DYa repbase;    DNA;    INV; 1521 BP.
XX
AC   .
XX
DT   15-MAY-2009 (Rel. 14.06, Created)
DT   15-MAY-2009 (Rel. 14.06, Last updated, Version 2)
XX
DE   Putative non-autonomous Transib-type sequence: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_DYa.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1521
RA   Jurka J.;
RT   "DNA transposon families from fruit fly.";
RL   Repbase Reports 9(6), 1154-1154 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(773..1018,1320..1520)
FT                 /product="Transib-N1_DYa_1p"
FT                 /translation="MSLYPWFPMSATVHKVLMHGYQIIEASIXPLGVLDKN
FT                 ARRLATNTIRVTGGYMLERVHGRTTWQTFSTEQWIPQILLCRASIKHLLNL
FT                 TSEFKIKRKPISYGRLGKAWSDRLKFGYVFICIDTIICTKFQEPSFKTLIF
FT                 VEKSARWPNV"
XX
SQ   Sequence 1521 BP; 500 A; 249 C; 267 G; 495 T; 10 other;
     gcacattggg ccagcgagcc gatttttcga cgaaaattca aatttttcat agaaagtaaa        60
     cctgttttaa taataaaatt tgaatagtat atacttcgwc taaaatkaat caaaagattt       120
     tagttgtttt gatgcatyyc tgaaattttg gcagcccttc taagtcagst gtttgattgc       180
     atgcgtgcga aactaaaaag cgcaggaaaa attttgttga cttgcgagcg tgccaaaatt       240
     tttgtggttt aaccaatttt cacaaaaatt atggaaaaga aggaccaagg tatgtagaat       300
     atttgtatta aaaaaatttc gttcatgttt gttaacgtgt tttttgtgtg cttttatttg       360
     tgttgtccaa aagtagaaaa aagctaacct gctaacccgt cwtttgtgga gtataactaa       420
     ttttgtgcca atttgcgcca aaaagtaatt gtcattatag tgcaaagtgt atataaacta       480
     attttaaaaa tcttttttgc kcctgcttgt tccgtttcga gttggatata taattcttaa       540
     gaaaacggtt gaagttgagt tcaccttaat atgtatacca aatggcttaa gttccttcaa       600
     atcgtctaca tcaagacgat ttggacgccc acctaagcta ctagctgaaa ttttaggtct       660
     tgatgaattc ctcattgcat attttagcaa tattttaatt gctatttctt gtgacctacc       720
     aattgatcca acacaattta aaaawtattg ccagaaaacc ataactcaat agatgtcctt       780
     gtatccatgg tttccaatgt cggcaacggt ccataaagtg ttaatgcacg gctaccaaat       840
     aatagaagca tcaatcyttc cattaggtgt tcttgacaaa aacgcccgga ggctcgcaac       900
     aaatactata agagtgacag gaggttacat gctcgaaaga gtacacggca gaacaacatg       960
     gcagacgttt tccacagagc aatggattcc tcagatcctc ttgtgtcgag catctatcta      1020
     acaaaaagat tgggaggaaa ataaactacc cctaccagca gacgtaatca aacttttgaa      1080
     attaccaaac tkgctaaatt ttgttgacat gaacaataat aacaatgttc ccgattttga      1140
     tgctaacaat agtaatagtg attcagattc tgactctgaa atccgttttc aatagatctt      1200
     gatgtagaac acgactttta tgaacatttt taaatgtaaa atacttattt atagtcattt      1260
     gaatgcattg ttatttttta gttattaata ttaaggttgt gttaaaaaaa attaattaaa      1320
     aacatttgct gaatttaacg agtgaattta agattaagag gaaacctatc tcatatgggc      1380
     ggctagggaa ggcgtggtca gatcggttga aatttggata tgtttttata tgcatcgaca      1440
     ctatcatatg tacgaaattt caagaaccta gctttaaaac tttaattttc gtcgaaaaat      1500
     cggctcgctg gcccaatgtg c                                                1521
//
ID   Transib-N1_LMi repbase;    DNA;    INV; 1985 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.12, Created)
DT   13-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1985
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3314-3314 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
SQ   Sequence 1985 BP; 642 A; 343 C; 391 G; 608 T; 1 other;
     cacagtggtt cagaacggcc gattccctgg ccaaaagtcg aaaaatgaag gttgaaagat        60
     caatgttttt ggaatggatt cttgttaagg agggtttggg gctctcagat ctcattagca       120
     gaggtcacaa tattgtacac ctgcttccct gcgacagtcg ttagttgcct ctcgtagaaa       180
     cacacgcgcg acgcgtcagt gcccagttat acagtgcttc agaaaatcat acagaatttt       240
     acaacgaagc gtccgattcc aattttccaa aatggaaaat gtttacgaag gtatgtagaa       300
     acaktttatg tacttcaatg ttcgaaaatg tttgttgttg tttatgaaac gttatactaa       360
     aggtaatcgt gattatcatg ttttttcgct tctttagaaa tacatttgtg tcgatacaaa       420
     aaaattttaa cacattttaa cgctggaatt gacagggaca tgtttgttga actatctatt       480
     aatgaaattt tcaagaatta gctgctcgaa agttgcccat ttagaataat aacgatttta       540
     gtgttactgt gcacgctgtc gtgcgcattg cgcactgtga cttaatggcg atactctccc       600
     ctcaacttcc tatacctgag gcttgaaagg tcccaggtat ggagggtttt tcgtagatga       660
     tttctatctc tttctaaagt attgaggaga taagtacggt atattattgc aacggtgtag       720
     cattgtgaat aaagatttta aataaaattc caaccgtaat gaccattttt acagaaatat       780
     gtttacaaat atgtttggag aaccaaaggc cttcttcatt ccgttactgc agaccgctga       840
     gattgcaatt tttgaaagaa accgtgcagt caactgttga tgaaaaaaat atcattgata       900
     agcagatagc atctctcgtc acattcacta aggtaacgga gggtactaac gttcaagtga       960
     aatatgactt accgtttaca atgatagatg taaacgtgag aaatgctatt actgactcta      1020
     aatctgcaca agatgttatt tatgtaattt gacgtcgaaa aatttcaaca atttacaatt      1080
     ggtggaacaa acaaaatgtg atagctcgaa actaaatttt ggaatttctt ccttacacgc      1140
     gtggataagg taagtttacg aatggatgct tcatattgca tataaactga atgacggaac      1200
     taatggatgg aaagaaagta gttgaagatc gtaacgaaca aatacgaaag aaattttaaa      1260
     actgctttag gtttacatat cgatatgcct aagcaaggat ttggcagtac aaacgacggc      1320
     aatagagccc gacgtttttt gagaatgctg ccttaacagc agaattttga atttggacga      1380
     aaaattcgta gcaagctgca aagtaatttt gcagacaatg atgagcggtt tcgctgtacg      1440
     tgtcttgcaa tcggacaact ttccgggttt attgcttaga cgctcaagaa gcgaggaaca      1500
     aggacattcg tcggtaccgc gaaaattttt ctcgaaaatg tacgcgagag aagacaatgt      1560
     ctgacgtttt tcgcggttct tgcatcctcg gacccactga taactaattt tcaaaattaa      1620
     aaatagtgca ccattacctt ctgatgtaat agaacttctg aacaccagaa gagtatgtca      1680
     caaatagtag cttaccctca gcagaaatcg aaacatgtac gacggatcca tctgacgcaa      1740
     ttatgatttt taattaatcc aatggatcag tctaatggga tgtgttgtat ggaattatgt      1800
     acataaaata aaatagaaat ttatatattc tacaaaattg tttttcattt tagaatttca      1860
     aatatcatga atctattatc aaattcgtaa tcagcgaccc caaaaaccta aaactgggaa      1920
     ttttgaaatt attattctca cttttcgact tttggccagg gattaggccg ttctgaacca      1980
     ctgtg                                                                  1985
//
ID   Transib-N2_DEl repbase;    DNA;    INV; 1037 BP.
XX
AC   .
XX
DT   02-JUL-2021 (Rel. 26.08, Created)
DT   02-JUL-2021 (Rel. 26.08, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila elegans genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N2_DEl.
XX
OS   Drosophila elegans
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; elegans subgroup.
XX
RN   [1]
RP   1-1037
RA   Bao W.;
RT   "DNA transposons from Drosophila elegans.";
RL   Repbase Reports 21(8), 4028-4028 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. 5-bp TSDs.
XX
SQ   Sequence 1037 BP; 315 A; 145 C; 172 G; 405 T; 0 other;
     cacagtggtc ggttccatag gccataaata aaaaaatcaa agtcaaaatt ttgattttaa        60
     atgtaccaat tcttatttat aattggtcta gctatttgaa tttattcatc tttttgtttt       120
     gctctatctg tcctcttcaa gaatagcatc gaaagagaga gcatgatatt cattgggtat       180
     ttcagcgtaa gcaacgtgca agggaagctc tccttaaaaa attttttaag cttattaaaa       240
     acaagtttta gtgcaatgaa agtgcttaat attataaata aaggtattaa cttccatttt       300
     acaacaaaaa gtatatgtag tatgtgttgt gttttgtgta aatcaatatt gtatttagta       360
     cataattgtg agctttcttg gtttgtcttt tctgtgtttg gttagagttt tagttgtgat       420
     ggcattcttt ggcacaaaca aatctttttg tataatattc ttaagcattt taagaatata       480
     agaatgttta attcaagtgc cgaaagttgc cgaacggctt gcaattatac gaaaaggtaa       540
     cctaacctca atttttaaaa aaagacgtgc ttctgctgtt tgttgtagtt tgttgccgtt       600
     tgttggtttg tattgtcgtt tgttgttatt tttgtgttat gttttgtgtt tatattcttt       660
     tctttaaaat aatagcttat tatttcctta ggaagtgcca attttcacga ttgcgttctg       720
     ttctgtgtcg tatcaatgaa agctatatga tatagttgtc cgatttcaat aatattaaaa       780
     ccgaaactcg ggaatattaa actattacta aatcttaaag aactaaacaa aaaatgtaaa       840
     aatcaaaaaa gttataattt ttttttcatt tttttcccga ttgttcctat gaaagctata       900
     ggatatatgg tacgatctgg ccaattcttg tcctatatat ttataacatt tttctagatt       960
     tttggtacaa gtttcaaagc gatagcccct ctagaagtat ttatggccgc ggctcccata      1020
     caagaccgac cactgtg                                                     1037
//
ID   Transib-N2_DSuz repbase;    DNA;    INV; 1398 BP.
XX
AC   .
XX
DT   15-JUN-2021 (Rel. 27.01, Created)
DT   09-JUL-2021 (Rel. 27.01, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila suzukii genome - consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N2_DSuz.
XX
OS   Drosophila suzukii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; suzukii subgroup.
XX
RN   [1]
RP   1-1398
RA   Bao W.;
RT   "DNA transposons from the Drosophila suzukii genome.";
RL   Repbase Reports 22(1), 85-85 (2022).
XX
DR   [1] (Consensus)
XX
CC   93% identical to consensus. 5-bp TSDs (mostly CNNNG).
XX
SQ   Sequence 1398 BP; 469 A; 245 C; 274 G; 406 T; 4 other;
     cactatgggg actttgccct gtttttttgg cataaatctg tttttcaaaa gtattcaaaa        60
     ttgcgaaaag ttgatgttat cgaattaaga acagatcaaa atgttatgtt acataacgga       120
     aatgttaact taacaggcca ctgttaaaat aacagctgtc aaactcagct gctgcaagcg       180
     aacagcacgt gagtccgttg agcctaattt ttttgtgaaa tctaaaactt atatctcttg       240
     aacgacaaga cgtaaatcct tcaaatttga aatggatatt tcttctgcat gtgtgtacta       300
     tatgttaaaa tgaatatatt ccttattttg tgtgtatttt tcaaacaatt tataaattta       360
     gcaagtgatg tcttggtata attttttawa tgaaatttcc actttgaata gagtttacaa       420
     aaaatgttga aatttgttga gtgagtgtgt tagaccatct tttagagtga tttattccta       480
     gtttaaagaa tccagcctca atctgcgctt tttgcgactt tttgcaaaaa ttacattttt       540
     atgtagcaac ctctcgatat gcaatgcggc cctgttagag gtgtggcgca agcaaaccta       600
     cggccgtgac aaacagagtg ccgtattcgc tttwacttgt gagcacatcc tcgacaatac       660
     tccttagatg aatgaaactc gtttaaagga gaaagcgcga gtgttttccg taaatttttc       720
     gcaaattttg ccaaaattgc aatagaaaaa tggacatctt cactatggat ggacaagttc       780
     gcttggattt aattggaaac gaaagaaaag tagagccgaa aaggtaataa aatggacgtc       840
     gaaaattaca tattctttaa aaggcacagt acgccagaaa aaggatgcag cagccatckc       900
     tctcggtttg gaaacataac tcgaggttac tggtacaagc ggcaaggaga gctgctcgta       960
     agacttcacc akgcaaggaa gcacagcaga atttgtggct tcacagatgt gtttcaaaga      1020
     gcaatggact tccgatccca taatttcatc ggtaaattta aacaggcgca ttcagaaaca      1080
     taagcgactt ccccttccac atgaagtcat agcattgcta tcatgtgact tgaaacctac      1140
     agagggattt ttagacggtg ctgaccataa gaaagaagac gaccatgact tcctttataa      1200
     cattgaaatc aaaaataaat tacatattaa ataaaaaaaa aaaatttggg gggggggggg      1260
     gggttgggcg acacccccac ttctgcaaat taaatctaag ggtgtaccga ccactagaaa      1320
     aaaaaatgat caaaatacct tgcatagttc aggagttatt aatttatgcc aaaaaaacag      1380
     gtcaaagtcc ccatagtg                                                    1398
//
ID   Transib-N2_DTa repbase;    DNA;    INV; 998 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   30-JUL-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-998
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4689-4689 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 998 BP; 308 A; 146 C; 160 G; 384 T; 0 other;
     cacagtggtt tcccccatag gccaaaattc aaaaaatcga tagaacccaa aattggcaaa        60
     gattatgcaa attttctcta aaatgctcaa gctttttcgt ggcataccag atttttctgg       120
     aaaactttcg gtactttcta aaaatagacc taaagtcgtg agcacgtgtt tagttgcaaa       180
     gcaaaactgc gcgcatcact aactttaaaa gcgtgtattt cttaaattac gtgtccaaat       240
     taatattctg tgatatggat tttgaagtta aaggtattat ttttaagttt caatattaat       300
     aaaagctaac ttgtgttgtc cttattatga aattactttc taatgttttt agcagctgtt       360
     gtattcgtct ttttatgttt acttaaagtt ttaactgtgt tcccccaaga ttccccgatt       420
     cattttttat tcagtgtaat tgttaatacc ttaaggtata aaaaaagtta aagctagctg       480
     cagatacttg cagatgtgtc cataatcaac aatctactaa cagcctctat ttttgtcttt       540
     aaggtcaaat cagctgttta ttgtgttctt tattcgtgtt tcgtgttttt attaggttca       600
     aattgtaatt tttgttttct tttgctatta ttggattttt tgtttattat tattattggg       660
     tttttttatt tttcaagtaa tttacaggta ataatcaaaa ctaacggatt aatatttgtg       720
     gacggataag aacccgaagg catggtttct tatccgctta aatatgattt aaatgcaata       780
     atactttaat aaaaaaaaat ttgaaactga aaatagctac gtgtttcaaa tttggtccga       840
     tattttgtat ggaagctata ggacatagtc gggcgatatg tccaattttt tgttgctata       900
     attaaaatat ttttatagaa ttttgggaaa aatttcgtaa cgatataaca actagaagta       960
     tttttggccg cggctcccat acaagcgaaa ccactgtg                               998
//
ID   Transib-N2_LMi repbase;    DNA;    INV; 1058 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 19.12, Created)
DT   27-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1058
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3315-3315 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
SQ   Sequence 1058 BP; 315 A; 191 C; 213 G; 339 T; 0 other;
     cacagtggtc ccaaatccca aaaagctggc caaaagtagg acataaaaat tgttattcta        60
     gggactttta atggttggaa tagttgtagt ggtacaccta gtatgtatta tgaccgtaaa       120
     taaaagggaa tcgtccctac ctggctcagg aacgcatttc gtttgtgagc atcgggcctg       180
     ccgcactgtt tactcgtcga gcgtcgaaag cagcacaaag ttcagacgtg tgtagaatcg       240
     cgaaaagtta acagatttgg attctgcaaa atgaagtctt ctccagaaag taagtacaat       300
     ttgaacgtgt agcttgaaat tgttattgac aatgtatgaa atagtaaata attaatgaaa       360
     gtagtggtat ttttcttggt cgcgttccga gaagtcctgt tgaaaaaagc aataagtcaa       420
     aactcttgtc gactcctgct cttaaaccga atggaaattg ttccttagac atttcttcaa       480
     aacatatcca aaaattagct gcaactagct gcgacttcgg tttcagttat aatttttatg       540
     cgatgatgtg tgctctcttt gtagtttttc gtaattttac cgtctgaaat attttttata       600
     ggaaactggt caaaacaatt ctcctattaa tgttattcct tcattttcta cagaacctct       660
     ggataatacc gaagaaattt ctttcacgag aaaggaaatt ttcgtatttg tgaaatcggt       720
     attgaacgag aatatcaacg tggtcactga cattgttgag atggaggtgt caaacaaatt       780
     gaagcatcca tacattttgc cgaaaagttt gaaagatgcc atggctaaat tggtatcggt       840
     attcaagaag aggtggcaac cccgattcaa gactttcact cgaattgaat acgtttttga       900
     agagattttc cgtcgtattt catccgccat tttgtttttc taaattttga cttcgaattc       960
     gtaatcagcg accccgaaaa ccgccaagtc cagattttca gccgatttta taacgttttc      1020
     gacttttggc cagctttttg ggatttggga ccactgtg                              1058
//
ID   Transib-N3_AAe repbase;    DNA;    INV; 2727 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-2727
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1310-1310 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~97% identical to consensus. 5-bp TSDs. TIRs are ~700 bp long.
XX
SQ   Sequence 2727 BP; 918 A; 454 C; 419 G; 936 T; 0 other;
     cacagtgctt ccaagggcct atattcgtga tcgaaaatgt tttgcaccag aaaagttggt        60
     tttagaggta tggtgtcttc agagaagttg ttcgggatgt tgaagccctt cttaagaaag       120
     aattattttt gtgatgaatc cacctagcag tgagatagat tttcactttt ttgcaaaagt       180
     ggagatacag caatggtgtc ttcggcaaag ttgtagataa tttcactaca tgaaaatttg       240
     ctgaagacac tttagctcta tctattgaat tttaagagat atgggtcatt ttttgtgaac       300
     gaccccttaa aactagtttt ttcgttatat ctctttctgg gtatttttga gatttttcac       360
     atgttctaca aagttgtttt aattgataaa atacgcattt ctttagaaga cataaaaaat       420
     gtatctctta tattttcgga gttatatgat attttatgtt gaaaaatcgg ctatttcacc       480
     ttcctctaac atttacaggg gcaaattggg gcaacatttt tagcttgcat ataaaagagt       540
     aactcaatag ctatcaaatc catggtaact gacacgtggc actgcgttcc ttgcctacaa       600
     aatatgttct gtaaaatatt gaaaaattaa aattatgcag cttttaatac cgtttatttt       660
     ttaaatacgc catttttcag ggctgagtga caattttcag gtcttttacg caatgatata       720
     ttcggtttgg ctaatggtga tattgcctaa gataggatat cttgaaatca aacgtcatac       780
     ttctcattta cagtgaaaac tagatgtatg aattcttaga gatagccttt attacgtaac       840
     atcagctcta tactgaacgt agtataaagc acatagaata atgttagtaa tttatttgcc       900
     ttaaaacgga agtcatccta tttaagctta aaataataat aataatagta ataataataa       960
     taataacaat aataaaggaa agaatgtttt ctttagtttt ggtattttgc tcttttgtat      1020
     tcacaagaga acataatctt tataaatcta tccgtctttt catataaata aaactaaagt      1080
     ggcgtgacat acgaacagaa tggctttcaa acggactatc atttgttacc ataaacaagc      1140
     tataatttcg ctgatatgtg tatttttaag attttagata ctactttttg agcatgtgaa      1200
     gaagaaaatt taaaataaga ccctttttat atatttctgt gcgataatac agtcgactat      1260
     ccacatctca atatttttgc ctatgtagat tatttctttg atcctctctc tcaacaattt      1320
     ctttctccat aaaaagacta tcttttaact attattatta caaaagtgtt catatgatga      1380
     tatgtagtct taggcgaatt gattatttac attatccact gtgcttaaag tgaaacatat      1440
     cggaatctag agatggtcat cccaatggcc gacttatgtc atatctctgt ccgcattcta      1500
     aaagcactta actgaacaaa tattgaatta acaagcatta tattcttatt ttatgctttc      1560
     tactaatgca caaagctaaa ataaaaatca ctgtcgttcg atgcctactt cgccagattt      1620
     gtgtcttaaa agttttagtg caatatttac ttaatataac taactatttc acgttaacaa      1680
     tatccaaaaa tatttagtat ttgagagatc acgtttttac agtcataacc gaatatatca      1740
     tatcctagaa gacctgataa ttttccactc agccatgaaa aatgggaacg gttcatctgg      1800
     cttaaagcca tttagcatat ggtcatttgg cataacccca attgaaataa tggccattta      1860
     tcataacggt catttcgcat aattagaata aaattctttc tttcaaaata tacctgttct      1920
     ttataaatgt gtttatgtta aatgaccatt gtgccaaatg accgttatgc caaatgtctt      1980
     ttataacaaa cggcttgatg ccagatgaac ttatgccaaa tggctttata ccaaacgacc      2040
     cagacccatg aaagatggcg tatttaaaaa atacacggta ttaaaagctg catactttta      2100
     atttttcaac attttacgga acatattttg tagtcaagga aagcagtgcc acgtgtcagt      2160
     taccatggat ttgatagcta ttaagttact cttttatatg caagctaaaa atgttgcccc      2220
     aatttgcccc tgtaaatgtt agaggaaggt gaaatagtcg atttttcaac ataaaatatc      2280
     atataactcc gaaaatataa gagatacatt ttttgtgtct tctgaagaaa tgcgtatttt      2340
     atcaattaaa acaactttgt agaacatgtg aaaaatctca aaaataccca gaaagagata      2400
     taacgaaaaa actagtttta aggggtcgtt cacaaaaaat gacccatatc tcttaaaatt      2460
     caatagatag agcaaaagtg tcttcagcaa attttcatgt agtgaaatta tctacaactt      2520
     tgccgaagac accattgctg tatctccact tttgcaaaaa agtgaaaatc tatctcactg      2580
     ctaggtggat tcatcacaaa aataattctt tcttaagaag ggcttcaaca tcccgaacaa      2640
     cttctctgaa gacaccatac ctctaaaacc aacttttctg gtgcaaaaca ttttcgatca      2700
     cgaatttagg cccttggaag cactgtg                                          2727
//
ID   Transib-N3_DTa repbase;    DNA;    INV; 1794 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N3_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1794
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4644-4644 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1794 BP; 632 A; 315 C; 288 G; 559 T; 0 other;
     cacagtgtaa gattttgcca atctagcggg acttttagca aaagttgaac tatttttgag        60
     gtcgatgagc ttttagcagc acttttagaa atgttcaact attacgaaaa caggcacaaa       120
     acaaaacaaa taattttttt ttgggagata acggttttta aagctggact ttagaaatgc       180
     atgcaaaatt gcactgggaa gcgagcaaca gttgacaaag tttagtctta tcaattgcat       240
     cgcgtgatca gtgggagcag ccaaaagtta tttttcccag aaactttaga caattcttaa       300
     tccactttta aaaacaaaca aatttttttg ggaccaaaaa attttttttt cattttttga       360
     aaaaagtgcc aaaaagtaag tgtatttttt catatttctg ttttttggtg gaaaaaaact       420
     tatattattc tatcgtattc tatccaacca gaacatacat cattcgcatg cattcattct       480
     gattcagaat ctaaaataaa atcttgccca tattttgccc aaagaccttc tatttagaaa       540
     tgagtgaaat aagccgtgct gcatttttcg aggtttggtc gaaaaacata aaaaccactc       600
     cgcgagacgc tcttgtaaag cacgcagtga tggtgtttgg caatgacatt gatcactcca       660
     aattgaaatt acactgtctt ttgagtttca aaaccgattt gagaaatcta ggagagataa       720
     agccaggttt tttgctcata atgcaagtgg ccttcaggtc acattaaatg gcgaagactg       780
     tcgcattgat gtcattgctt ccacctcaag tacaagaggg aggtcacaaa aagtcttttc       840
     tgagtgtttt cctaaaacac aaaaaaggaa aagccaagaa ttgttgccta cgatagatga       900
     ggatcaattg ctatcagctg cagagcaggc tttgcgggcg gaaggaaaac gggattcagc       960
     taaattaatt aatgaattac caaatgctcc cccgtccacg gggactataa ttaagaaagc      1020
     taaattatct tctaatagca ctgcaaaaca cctttcagca gatcaagcac ttgcccttct      1080
     gatagaaata gaagtacaat accacaaaaa ttgtctgtcc aaaattatat ccatgttatg      1140
     atctcgttaa ggagccaaaa atgttatgct atcctactgg tataaaagta agagaatcct      1200
     atgctgaaat aagtttacaa tcccttattg atcataccgt aaaacggctg ataagtgctc      1260
     aagaagacat ttttgagtca ctgtctccac tagacgatgt acacatgaag tttgaattgt      1320
     taccatttaa taaaaaaaaa tcttaaaaat ataaaccaaa gtttttttgt tttttttatc      1380
     aattatcttt aatataaaac cttatttgca gctgctcagc ttataacatc gaagttacag      1440
     ctaaaaacat gagcatataa ccaaaattca acatttttca aaaaaaaaaa aaaaaagtgg      1500
     tctccaaaaa ttaaaaacaa aattttttaa gttggcgaaa attataacaa aaaatacgaa      1560
     aatagttaaa aatgtcgaac attttttttt atattttttt ttggggtttt tatcttaaaa      1620
     aaaacagttt tttttcaatt tttaacgccc ccaaaagtgc cacgcccatt tttttatgtc      1680
     caacataatc gttgggccta ctagaatatt cactccaaat ttgaagccga tatctttaaa      1740
     aatacgactc ctactgattt aagtccccct agattggcaa aatcttacac tgtg            1794
//
ID   Transib-N3_LMi repbase;    DNA;    INV; 1378 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   DNA transposon, consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1378
RA   Bao W. and Jurka J.;
RT   "DNA transposons from the migratory locust.";
RL   Repbase Reports 14(12), 3208-3208 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 1378 BP; 418 A; 254 C; 271 G; 435 T; 0 other;
     cgcacagtgg gacggaatcc ccaaaacgtg gccaaaaccc cgaaaaatga attttcgatt        60
     ctcggaattt tgatgggtgg gttgggtagg ggaaggattg gtgcatctca ttccagaagg       120
     agaggtcgcc accttcgata cctgtcgagt tacgtcagtt caaaagtgac cttcgtcgag       180
     agcacacgcg gcgctgtgaa agcaaggcaa atttactctc ggtttgtgag tgaatatttt       240
     ggtagtgaag tgaagaattt cagttctaca agatggaaac ggttgctaca ggtatgtaca       300
     aaatgttcgt acactaaatc ggtataaatt tcatggttat cctatttata ttatattttt       360
     ccgatgcctg tgcaaaacga ccatgctttg ccgaacttgc attttcaact agagcaaaag       420
     tagcatatac cgcaatatac cgcggaattt caactcccag actatagact gattaattat       480
     ctgatggaat tgacaagaat cagctgccaa aatctgccat ttctcttgta taatgaatat       540
     ttacaagtgc ccgtgcactg ttgccgatcg gtcaattatc cgaagaaggg caggaagcga       600
     ggaacaaaga cattaaaaga tatcgggaag acttttccag aaaatgttca cgtgtaaaaa       660
     caatagaaga cgttttaaag aggcttctgg taacttcgga tccatacata tccagtatta       720
     gaaaactgcc acaaacacat gtgaaaagtt tgtcaaagga ggcaataaag ctgttactgt       780
     cccctgcaat tccaattaca ccacgatcgc ccatggaaaa ttccgatatg gattctgact       840
     ctgagaactt cgagagcgat actgactgat tgctagatat aaaaccaatc ataccatttt       900
     gtatgcatca gaacaacatc ttcaatcata ttaagttttg aatgttaaga acgattgtct       960
     ttattagcta cacttattac ttctatcgtt gattatacta ttacatttat tatttgtgtt      1020
     ctgtcaccga ctttgaagat tgtttcatta tattattgaa ttacaatgtg tgtggtatcg      1080
     aagaattttt tccgatatat tttcgacaaa tattctgtta ttttgttata ataaacaaat      1140
     cacgttggca gtgtattaat tattagtgtc taaatactat atatacgcta ttattaataa      1200
     attattatgg attttcatgg gtcacgttgc tatattagct ccgccatttt gtttagacaa      1260
     tttttaccat caaattcgta atcagcgacc tcaaaaaccc ccgtgtgatg agttttgtgt      1320
     gaattaaacg tcttcttggg gttttggcca cgttttgggg attccgtccc actgtgcg        1378
//
ID   Transib-N4_AAe repbase;    DNA;    INV; 1625 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   11-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   otherMITEs_Ele32; Transib-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1625
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1625
RA   Kojima K.K. and Jurka J.;
RT   "Transib-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as otherMITEs_Ele32.
CC   [2] Consensus update and characterization as a non-autonomous
CC   Transib. ~98% identical to consensus. This consensus is ~98%
CC   identical to the original sequence in [1]. 5-bp TSDs; usually
CC   CANTG. TIRs are ~720 bp long.
XX
SQ   Sequence 1625 BP; 565 A; 246 C; 258 G; 556 T; 0 other;
     cacactgggc caggagcaga atttagccag acaaaacctc tagcgcttta ggagtgcatt        60
     ttttcgagtt ggtgtcaaag gagacttgtc ttgaatttgt ttgttcttca atttgatgat       120
     aaaagttagt tggaaatttc gccgcatagg tggcgctgcg atgcaaactt ttttgttttg       180
     cgtcctagag ctttcgcgtc ttcggcaatg ttttagaacg tgtaaaaata cgacaagttg       240
     tcgaagacac caaagttcta ggacttcaaa taacaaagtt atggtaaaaa atgtgtaaat       300
     cacttaaatt ttacgttttt tctacttttt acctcaaaat cgtaaaatat tttattttaa       360
     caaccgtgcg tcgtttaatt tcgatgacat gcatgtactg tatgaaaaaa aatcttatta       420
     ttatataaat atttgaattt ttgaacaaat tattgtaaaa acatcataat ttttaacata       480
     actttactca aaaagttgca agtttttgca aaaacttatc aatgtaccga aatacgctat       540
     atttcatcta ccaaatgtca aagtttgcca gatgtatatt ttgatatatt tgagatatct       600
     taattcaaaa tagccatctc ttcatataaa tagaatggac ttattattaa ttttatcatt       660
     attctacaag atttttgaca cattgcgtca gttaagattt gttaatcaaa tacttttatt       720
     ttgatactag tgatttgtaa attgtgattt atgtcagaga gaactgtctc gacgcggtca       780
     taacaggatg taaaaaatga attatagcag gccatagcga agttctaatt agacagttgc       840
     tggagatgac ataagagcca cacaacaata tgaaaatatc tagatactgt aacacctgac       900
     taataaaaag tatttgatta ataaaacttg actgacgcaa tgtgtctaac aatcttgtag       960
     tacaatgata aaattgataa taagtctatt ctatttatat gaaaacggtg gttattttga      1020
     attcagatat ctcaaatata ccaaaatata catccggcaa actttgacat ttggtagatg      1080
     aaatatagcg tatttgggat cattgataag tttttgcaaa aatttgcaac tttttgagtt      1140
     aagttatgtt aaaaattatc atatttttac aataatttgt tcaaaaattc aaatatttat      1200
     ataaaaataa gatttttttt tcataaagta tatgcatgtt atcgaaatta agcgacgcat      1260
     ggttgttaaa atgaaacatt ttacgatttt gacgtaaaaa gtagaaaaaa cgtaaaattt      1320
     aagtgattta cacatttttt accataactt tgttatttga agtcctagaa ctttggtgtc      1380
     ttcgacaact tgtcgtattt ttacacgttc taaaacattg ccgaagacgc gaaagctcta      1440
     ggacgcaaaa caaaaaagtt tgcatcgcag cgccacctat gcggcgaaat ttccaactaa      1500
     cttttatcat caaattgaag aacaaacaaa ttcaagataa gtctcctttg acaccaaccc      1560
     gaaaaaatgc actcctaaag cgctagaggt tttgtctggc taaattctgc tcctggccca      1620
     gtgtg                                                                  1625
//
ID   Transib-N4_DTa repbase;    DNA;    INV; 1253 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N4_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1253
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4645-4645 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1253 BP; 456 A; 186 C; 183 G; 428 T; 0 other;
     cacactgggc cagaaagtta attttttggc caaaaatctg taatttcttt cctaggacag        60
     ttagaaggat gcagtttttt gcgttttttt cttaaaagat tgaactttcc aacgaactaa       120
     aagtaaaatt tcttggaatt ttatatgata tagataatcc agaccaaagt cggaaaattt       180
     tacgtacttt tcggtttttt atttttaaaa aaataactag aagacgcact tcttccattt       240
     tcgaaaacaa taaagtatga gataaaacaa actaaaaaaa attaacatca ctaaaaaata       300
     ttatgtcatt taagatttat gaaccgttaa aaagtgcaac tttcggaggc tcccacatca       360
     acgtttatca aacaatcgat ttaaaaaaaa tttctatttt tttgttcttg ttacctttta       420
     agttttatat aatcaaatta tgtaaaaaaa attgtttaaa aatattgttt tttgatttgt       480
     ttaatgttaa tttgacatat tctgaagtca tcacaaaagt atgctacatt tttatttgca       540
     tagtcctgat taaatagata gatataggtt tggaaaatac cataatcgat tagtgtacgt       600
     aaaaagtaga ttttagatgt tagtcacact aaaatcaaat ttttgagcgc aaaatgttca       660
     ccaaaacctg aagaaataaa gtatggcata ctcttgggct ctcttagcta agctcttcaa       720
     aatagctcga cttcgagtta agccttcaat taaaacttaa attaccgaaa actaaggcaa       780
     aaccgcatcg agtcggtggg ctacgctttt agtaaattga tcaacgaatt tttttttgaa       840
     ggaatgaact aatttgggga tggcactcga aggcactcga aaagcaaagt actcatttgc       900
     tgaaaaaaag cgtaaaaatt aacaattaca tttattttag caaacaagta agacatacga       960
     gctatattat attttttact tgttgaaaat aatcccttct gcaagtttcg gaaagaagtc      1020
     gaacagcaac atcagcatct ttgacttcta aatttttttt catttccatc aatattttat      1080
     gaatttttca ctttgaaaat atggtaaaag aaaactactt gcccgaattc tttgaaactt      1140
     tggcataaat tagtttaatg tattataaaa aggatcccaa actcaatttg gtcattttct      1200
     taaaaaagaa aaacgtattt ttggccaaaa atctgatcgg ctggcccagt gtg             1253
//
ID   Transib-N5_DTa repbase;    DNA;    INV; 1694 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N5_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1694
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4646-4646 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1694 BP; 591 A; 264 C; 291 G; 545 T; 3 other;
     cacactgggg tgagcgaccc caaaagtaac gattaattca aaatacaaat tttggagttg        60
     cttaatgaga gtcatatgtg gcgaaagtag ataaaattca gcattaggaa gtgaaagaat       120
     tatggtccta cgtcttacag aaacctcaca atgataatcc aaagtttaaa ctttgttttt       180
     tcgttcttaa aaatacgaaa aattgatatt ttttgtcact ttgagtgatg atttatgcca       240
     taaaaataaa ccgaaacaac ttttgaaaat gggaataata aatttgaacc cttgactatt       300
     tttacaaatt tttaatttat tttttttaaa tatctaaaaa aaaaaattat tagaaatacc       360
     tgtaaaattt gacgtttttt atagtaaatt aggccaaaag tttcttcaac cgtaaccaac       420
     cgtaaccatt ttttttttga aaaattcttg agatattacc taagtcccca ccaaggggtt       480
     tcttgccccg ttctgcccca agacagttat ttttattcaa agttgcacgg tatttcacaa       540
     aaaaatcgtt tttatttttt gaatgtcagg tgttggaaag ctgtttcggt tagttggttc       600
     agctgtgtcg ctcatctgct ttagcgtcag ctgtttagtg cacttgtgat tagtaaacaa       660
     agtaaatagt caaatttaat ctcgaatctt caattaaact caggaaaaaa aggaaaacga       720
     agaacagcgt atggaatagt gttgtaatag tgaaggcgtg actcgtgtga tagatcgtca       780
     atttttcaag tgcggtgaaa attgctggct gatagctaaa aaaggtaccg ccatagtggt       840
     tgtcgtgcac gtcatgagga agaatacgct catgaaacgg ctagatactt tgtacaattg       900
     tatccgtggt attatatkcc accaacawta cacaagttct taattcacgg tgcggaaatt       960
     atttcgaatg cgttgttacc cataggccaa ctgtcagagg aagctcaaga agctcggaac      1020
     aaagacttca aaaaatacag agaatgttat tcgagaaaaa tggatagggt gaagagcaac      1080
     caggacattt taaatatgtt tttgattagc tccgatccaa taatatcaac caaacggaag      1140
     ttgccgaaaa aaaaggtgca caactttccg aaggaagctt taactttgtt aaaagcagca      1200
     gaatttatga gcgacaagag cgatagtgaa ggcgaatccg agatagaatc ggattgattt      1260
     tttgattttc tttwaaaatt atggtttcca ctaataaatt cgaagatata catataaact      1320
     ttttttattt aataaataca agcaacacaa ggttttttct cattttcagc atattgtttt      1380
     tggcgcatat ttactataaa atccatcgat tcttagtatt cttaatagat gtagtctaaa      1440
     taaatacata aacgattcgg gtaaattttc agcgctatga atgaacaatt aacagttttt      1500
     tggtaaaaat acccaaattt tcacaaaaat ccgacaaata aaaataatta taaaaaaaat      1560
     atatactcta cggaaagtcc aaatgttatt tttttttact tatcttgatc aaatacaaaa      1620
     tacaaattat aacatgttca aattttttgt cggctgattt gatcgtcact attggggcct      1680
     ctcaccccag tgtg                                                        1694
//
ID   Transib-N6_AAe repbase;    DNA;    INV; 1964 BP.
XX
AC   .
XX
DT   11-OCT-2010 (Rel. 15.10, Created)
DT   11-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   otherMITEs_Ele18; Transib-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1964
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1964
RA   Kojima K.K. and Jurka J.;
RT   "Transib-type DNA transposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Named as otherMITEs_Ele18.
CC   [2] Consensus update and characterization as a non-autonomous
CC   Transib. ~97% identical to consensus. This consensus is ~99%
CC   identical to the original sequence in [1]. TSDs are 5-bp; usually
CC   CANTG. TIRs are 595 bp long.
XX
SQ   Sequence 1964 BP; 656 A; 318 C; 350 G; 640 T; 0 other;
     cactatgggc cagggacgca atctggcggg acaaaattaa taactcggta acgaagcgtt        60
     tccggtattt ggtgtcttcg gcaaagtttt ttgtaacaac gaggaccatc tactgacata       120
     aacggatagt tcgtaaatcg tccgcatagg tggcgccaca atctaacttt ttactgtgac       180
     gttctagaga cttggcatgt tcggcaaagt tgttcatttt gataaaataa acaactctct       240
     cgaagacgtc aaaattccac agcctactgt tttcgagtta ttggcaaaat tagagaaaat       300
     tagtgaaaaa acgatttttt tcaccgaatt tgacattttt cctaagaatc atgtcatata       360
     atattttttg ctgataaata tataacaaac gcaagctctg gtggaaaaat tttaataata       420
     cgacgcacaa aaattaagaa actatgaaaa aacttgaaaa atagagcaat ttttgaacct       480
     taatatctcc aaaagcgcaa aaaatcgcaa gctcaaattt tcaggcaaca tagagcaata       540
     cttgatgaaa cggatgtcaa aattccagag aggtatattt tggtgttttt gagatatttc       600
     attttttaca atgattatat tactccaata cagttagttt ccatgaggaa tctgaaggga       660
     cgatcgactt taagaaataa cgagtcgtgg aacaaaaact ttcggaaaac tgtttaaaaa       720
     agccatcata gtagccatga aattcagttt aagagcagtt ccttgagttg atatcgagta       780
     atgtagatga aagtgtagat taaaactggg tacataattt tttttcttca ataattcaaa       840
     tggtatagta tgccatgata aacttgatca tgtatcagtt aattgttgtc atcatggttc       900
     gaggtgagta atttattttt gtgaatgtgt tacttttaac acggaaaatc aaattttaaa       960
     gcatattcat gtcgatatct ctaaatacta aaatttcaga gcgcacgatc tcttgtccgg      1020
     agcttgtata tttgtttcaa agcggaaaga gcgttgatcc ttggatgttt cgaaacagag      1080
     gatacagatc aaaggtatca atttggagat tccttcgatt ttgagaactg ttaggttgtt      1140
     taaccttaaa tatgtgttta atcaacggat ttgcttaaat tttgagcttc cggaaaattg      1200
     taacaacgaa ttcgagatga aatccaaagc cagcttgtac tgtgagcaga tataataatt      1260
     tcatgaaata ataaaatata tttttccgct aattttaaaa tacacttaaa tatttgccac      1320
     gaaaatatta atcgcgtaat gaaaagaaaa ccgtaaaaaa aattaaaaaa tctcaaaaac      1380
     accaaaatat acctctctgg aattttgaca tccgtttcat caagtattgc tctatgttgc      1440
     ctgaaaattt gagcttgcgg ttttttgcgc ttttggagat attaaggttc aaaaattgct      1500
     ctatttttca agtttttcca tgatttctta agttttatgc gtcgtattat taaatttttt      1560
     ccaccagagc ttgcgtttgt tatatattta tcagcaaaaa atattatatg acatggttct      1620
     taggaaaaat gtcaaattcg gtgaaaaaaa tcgttttttc actaattttc tctaattttg      1680
     ccaataactc gaaaacagta ggctgtggaa ttttgacgtc ttcgagagag ttgtttattt      1740
     tatcaaaatg aacaactttg ccgaacatgc caagtctcta gaacgtcaca gtaaaaagtt      1800
     agattgtggc gccacctatg cggacgattt acgaactatc cgtttatgtc agtagatggt      1860
     cctcgttgtt acaaaaaact ttgccgaaga caccaaatac cggaaacgct tcgttaccga      1920
     gttattaatt ttgtcccgcc agattgcgtc cctggcccat agtg                       1964
//
ID   Transib-N6_DTa repbase;    DNA;    INV; 1209 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   02-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N6_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1209
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4647-4647 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1209 BP; 443 A; 175 C; 163 G; 428 T; 0 other;
     cactgtgggg cgcctagaac aaaaagcctg ccaaaatggt tttttttttt ttaagatttc        60
     ccaaaatgtt gcaatgcaac ttcaaaaaca attgaattct ctatacacat caaaaggaaa       120
     gagtgatctg tgttgaatgg ttctcccact acagatttat aaagtggatt tttcgaaata       180
     taattttagc caataagaaa aaaaggtatt tttacacatc tttgaaattt ttctgaaagc       240
     gcccaagggc ctaagtcgta tatgtaacga ttgaaatttt aagagcaacc aattcttaaa       300
     atattaaaaa aaaaataaaa attttagata cataattact attttttttt aattttttaa       360
     aagtggtcca aaaaaaaggg attttttgga tatccttgga cgtaaagtag tgttacaccc       420
     tagatccccg tttaattctt tttttaaaaa aaagtttaga tatttaacta catattctga       480
     aaaaattagc ctgccctttt gtgcctcttc tgagaaaacc gcagtttaag ttagcaagaa       540
     atgttcataa tttgaaatat cgtcagccct ggttcattcg cgcgccctaa catcatgaag       600
     atattttact tatgtgaagg tattgatgaa gataatgata aattaataaa caaatttggg       660
     tttaaaattt taaattatgt tattttacta aaaatacata tatgaagtaa ataccggttt       720
     ctaccagttt ttttttgaaa atatgctata tttccttgat tgattctatg acatctataa       780
     gatatcattg accaattaaa aaaaaggtaa gcatagagct aaaatgataa ataatgactt       840
     aatcccaatt tatatgaacc aatattgaaa tagaaccgag acattcccct ttgtaataag       900
     cgtttatatg gcagctataa gatatagttg accgatttga ataatttttt ttttcaaaaa       960
     tcaagttaaa ttaaaaaaaa atattgggaa acttagaacc ctataagtaa tttatttata      1020
     ttttttttct taaaaaaaca atttattttt tcttaaaaat tttctacaac aaaaaaattt      1080
     cactaaaaaa attcacctta tgatgttttt ttacatattt aattgccttc aacaatgccc      1140
     catcaaaaga tattcgatat agggctccgc tgatttaagg cagacttttg gctttttcgc      1200
     cccactgtg                                                              1209
//
ID   Transib-N7_AAe repbase;    DNA;    INV; 1785 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N7_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1785
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1311-1311 (2011).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus. TSDs are 5-bp. TIRs are ~700 bp
CC   long.
XX
SQ   Sequence 1785 BP; 601 A; 276 C; 293 G; 615 T; 0 other;
     cacacagtgg gacgaaactg aatattgacg gccaaaacca cttagaggcg ttttagctca        60
     taggtgtctt cgggacattg ttttgaatta gcatcccgag taataataaa aaataatttt       120
     tatattagac taaacagagc acccgagcaa aaaatatttt cttaaaaaaa atttttaggg       180
     cgatcattgc ttcagcaaag ttttagatct ttttattttc aacaactttg ctgaacatac       240
     ttgatatttt taacttcgtt ttcacggtta aatttttaaa tatcacctat tttaccataa       300
     atatcagttt tttgaccatt tctatgctca atgtgcaatt tatgaacatg gcatgttcta       360
     caacatttta tatgttacaa aaatgcacaa ctttgccgaa tatatcaaag ctgtaataac       420
     atcacatcag aagatataat gaatttatgg taaactttat ataatttttg aacatttttc       480
     tatgcaagtt tctcctgaat cggcactttt cggcagccaa acttagtata ctttgatgcc       540
     tcattatatc agctaaagcc ccatggcaaa agaatgatcg ggtctcacag ggctcattga       600
     tttcaaccgt tttttgacaa gaatggaatt ttactttgac atcaaatatt tttttgacct       660
     tttgtgtgct cacagtgcaa tcaataaact tatgatgttt tgttattttt tgtatcacaa       720
     aagtcaataa ctgtatcgaa tgcatctgta taagctgaca agctgtagaa gcgttgcatt       780
     gaaaaacaaa atgtttttat tttaaaaaaa tactattttt gagaatttac ttggtagaat       840
     tcttatgtat cagcaatttc gagcacaagt taacatttgc tggcacaaca acctaatggt       900
     tgaaaatgag gggaattagg tttaacaggt gaaattatat ttcactgtat attattatga       960
     ttggcttttt gtcataaaat atatattatt attggttctt aaaattttca cgtattcatg      1020
     ctcgaagccg aatcatcgtc ggctactacg atttgatgca gttttagtat gacaaaggtg      1080
     ttgaatacat agtattccaa atttattgat tgcactgtgt gcatacaaaa ggtcaaaaaa      1140
     ctatttaaga tcgaaattcc aagctcgtca aaaaatggtt gaaatcaatg agccctgtga      1200
     gacccgatca ttcttttgcc atggggcttt agctgatata atgaggcatc aaagtatact      1260
     aagtttggct gccgaaaagt gccgattcag gagaaacttg catagaaaaa tggtcaaaaa      1320
     ttatataaat tttaccataa attcattata tcttctgatg tgatgttatt acagctttga      1380
     tatattcggc aaagttgtgc atttttgtaa catataaaat gttgtagaac atgccatgtt      1440
     cataaattgc acattgagca tagaaatggt caaaaaactg atatttatgg taaaataggt      1500
     gatatttaaa aatttaaccg tgtaaacgaa gtcaaaaata tcaagtatgt ttagcaaagt      1560
     tgttgaaaat aaaaagatct aaaactttgc tgaagcaatg attgccccaa aaaatttttt      1620
     tcaagaaaat atgttttgct cgggtgctct gtttagtcta atataagaat tattttttat      1680
     tattactcgg gatgctaatt caaaacaatg ccccgaagac acctatgagc taaaacgcct      1740
     ctaagaggtt ttgaccgtca atattcagtt tcgtcccact gtgtg                      1785
//
ID   Transib-N7_DTa repbase;    DNA;    INV; 1052 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   03-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N7_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1052
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4648-4648 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1052 BP; 332 A; 156 C; 197 G; 367 T; 0 other;
     cactatgggg catttgacca ctttggttgg ccaaaaccca ttttttaaaa gtcgttaaaa        60
     caaaaaatgt tgtttgagga tgtgttaaca aaagaccatt taacaatgtt acgtttacag       120
     aaatccgata gaggtcgcct ctgttaaggt aggagctgtt aaatcagctg ttcgatatgc       180
     aattatcgag ctgttgaatt tcgacttttt gcttgcagtt ttaaagtgct ttaaatttga       240
     gtttttaagc aatctaagta aactttttgg attggattta aaggattatg ctatttacta       300
     agtatttgtg tggttcgacg acaaaaatga gacggttttt tcttacaaat gagtgttaaa       360
     gggagtggtc taacaagtac atttttgtaa gaaaactaat tttcaaatgg agcaacaaag       420
     tgagtccagc ggagtccact tctggaacct attgggattt gtagattatt taattgttgt       480
     taaaatgtat atggtcagaa tcgccactta ttgccacttt ttctgtaatt taatttttta       540
     gaccataacc tcaaatttca caaactccta tcgtttgcac tggtggctaa ggaagtaagg       600
     actttcgtga ctttaaatta ttatcaaaat atagtagaaa tacttagctt tgtaattgac       660
     taacttaagt ggactttagc ggctttaaaa cgaaagttcc gctacaactt gaacaaaaag       720
     tcgtacaaat gtaaagtaaa ttctttcctt tgcccctttt ttttgagaac tttgggatat       780
     agtcgtccga tttgtacaaa actgttaata ttgttttaaa aacttacata attgctattt       840
     ctaaagttat gtgcatttat ctccaaaaac agcaaagtta atttgatcgt ttctatggca       900
     gctatatgat atagttttcc gatccggatg attatcatat ataatatgcg gggggataag       960
     aaatggcgac tggtaaagtt tcaagtcaat atcttttgaa atgaccgagt tattaatttc      1020
     ggccaacaaa agtggtcaaa tgccccatag tg                                    1052
//
ID   Transib-N8_DTa repbase;    DNA;    INV; 1437 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   04-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N8_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1437
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4649-4649 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1437 BP; 476 A; 212 C; 277 G; 470 T; 2 other;
     cacattggga tgaaaagcct tttttttggc ataaagtccm aaattatttt gtgaaatttt        60
     tggtttttct tttttttatc cgttaaagaa atgttcaact atcataaaac tatttttaaa       120
     atatttttgt gaccatccct ggctttttga cagctctcta aagtcagctg ttcgagttaa       180
     gttgcgtgcg cctaaatttt tctacgaagt gtcacaaaag tttaattatt tattctattg       240
     caaattacgc gcattctttt cggctaaatt atggaaaatc ttcgtcaagg tatgtataat       300
     attgcttaga gggcttacac tagaaatgct tttgttttgt gctgtttcta attgttttat       360
     tgaaccatgt tttgtgtaga agttaaccta taaatatttg tgtttcgtgg agtagaacta       420
     gcaagtgtac gcaggattgc gaaaagtgca aatgtggtaa tatgtgttat tgtgtatatg       480
     attaaatgga gttaataact tttgcgcata cttgcgccat ttcgtaatat ttaaatagat       540
     tcggaacaac tcgacattag taggggcgaa ctgctggaag tgtggctgaa gaataatcgc       600
     agctttgtcg ataccgttca ctggatgtgc gaaaggttca aaaataaaaa tmgactgtct       660
     gaaaatacgc tgattggcat caagaagaca ttaaaaactt ttgtttctca tgttagtaag       720
     ctgctaaaga aacacaatag gcatgttaaa tgcttcaaaa atgcaaatgc aagctggctt       780
     gcatcagaaa tataattttc tgaaaaaaac aagactggtc ggccccattt aaattacgag       840
     aatggtggat cgcgtttgaa agaaagatgg cttcagatct ctcgaaagaa aatcctacaa       900
     gtcttctaat gcgcttttag aggcaccccc tgttgatgca gtaattgata acccgcattt       960
     cgagttcgaa caaaatttgg acttcgagtt aaatacagat gatgagtaaa ataaaaatat      1020
     aacacgtaca ttttatttat atatggaatt tggccggctg actgggggtg gtaaaaatca      1080
     aaaactaatg aaaaccgaaa ttttacaatg gtcttaatat tatgtacaaa aaaattgaaa      1140
     tccgtatgtt aaaattacct tcgcggtcgg gggtggttca tgtgggcgtg gtcaaaatca      1200
     aaaactaatg aaaaccgaaa ttttacaata gtcttaatat tatgtacaaa aaaatttaag      1260
     tccgtattgt taaaattacc ttcgcggtcg ggggtggttc atgtgggcgt ggtcaaaatc      1320
     aaaaactaat gaaaaccgaa attttacaat ggtcttaata ttatgtacaa aaaaattgaa      1380
     atccgtatct ttaaaattag agtttatgcc aaaaaaaagg cttttcatcc caatgtg         1437
//
ID   Transib-N9_DTa repbase;    DNA;    INV; 1029 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   05-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib-N9_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-1029
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4650-4650 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus.  5-bp TSDs.
XX
SQ   Sequence 1029 BP; 359 A; 133 C; 161 G; 376 T; 0 other;
     cactatgggg catttgacct gttttttttg gcataaatgt gttttttaca agtattcaaa        60
     tttttgaaac attattggaa acgtattaag aatagatcaa aatgaaatgt tacataccgc       120
     aaatgttaag ttaacagtcc aatgttaaaa taacagctgt taaagtcagg cgcagcaagc       180
     gaacacaacg tgttcatact ttgcttgatt ttgcagggca tatataaatt aatatctctt       240
     caacgacaag acgtagaacc ataaaatttg aaatggatat tcattaaaac tgtctttact       300
     tcatgttaat actactgtga tgcttatttc gtgagtgtat ttgtagcaat ggcttcatat       360
     accaagtagt ctctcttaaa ggtttggaaa aagaaagttc aactttgaat agagattaga       420
     agaaatgttg aaatttgttg agcctgtggg ttgaatcatt ttaaaggggg gtcaattctc       480
     gattcgggac atccagtctt aatgtgcact ttttgcgact ttaagagaaa ttcagttttt       540
     acggcactgc caaaaatggt caaattaaca ctttatttgt cttcttcttg ttttgtaaga       600
     tgaaatgtta aataaattta atgcaaaagt cttcgccata acattatatt tgatttaaaa       660
     acattccgcg tcttattttc atggaaaata tttttttata cggcatatcc agtatttggc       720
     atacaaaaat gtcggatttt acaggaaaaa gtcaatatct cttcaaagaa gaaagttttc       780
     aaaaaaatgt ttttttgttt gttttaatat gtttcttcat tattagaaac cataaaaaaa       840
     aaattttttt tgtaggttta agaaaaaaaa tttttttttt ttgaataaat ttattatagt       900
     gtttaatttt tgctcaaaaa gatgtattta attattataa acatatttca aaaaaccaaa       960
     ctcaaaaaag ttgctttgtt ttggaattat taattaatgc caaaaaaaca ggtcaaatgc      1020
     cccatagtg                                                              1029
//
ID   Transib1    repbase;    DNA;    INV; 3014 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 5.06, Created)
DT   13-JUN-2005 (Rel. 6.03, Last updated, Version 3)
XX
DE   Transib1 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; TRANSIB family;
KW   transposase; TRANSIB3; TRANSIB1.
XX
NM   TRANSIB1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
RN   [2]
RP   1..1880 2726..3014
RA   Kapitonov V.V.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
RN   [3]
RP   1-3014
RA   Kapitonov V.V. and Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Proc Natl Acad Sci USA 100(11), 6569-6574 (2003).
XX
RN   [4]
RP   1-3014
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [4] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB1 has 43-bp
CC   terminal inverted repeats and it encodes remnants of a DDE
CC   transposase, which is not similar to any known transposases and
CC   is a characteristic of TRANSIB-like transposons.
CC   There are ~10 copies of TRANSIB1 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB1 lost its activity
CC   several million years ago. Originally [1], this element was
CC   called
CC   TRANSIB3. Later [2], it was renamed to TRANSIB1.
CC   This protein is ~40% identical with those in TRANSIB2 and
CC   TRANSIB3.
CC   There is only a partial ~60% nucleotide identity between
CC   TRANSIB1,
CC   TRANSIB2, and TRANSIB3.
CC   TRANSIB1 encodes the 699-aa TRANSIB1p transposase
CC   (pos. 272-290, 547-2627).
CC   In [4], the correct page number is e181.
CC   In [4]. the TRANSIB1 name was replaced by Transib1.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(272..290,547..2627)
FT                 /product="TRANSIB1p"
FT                 /translation="MENSSTDEYLFGHAELLDIWSNNSRSEDAVRQHIFKK
FT                 IGQNNLNECSISLVNKKVKSFFDYIRKHLPGCNRSLDRLKKKHFKWLASSI
FT                 SIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLLLHAASVSSKKG
FT                 NEKDMAVVLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQ
FT                 YINLKRNTKVHGFDIYPSYPDVLNAKLKLRPNGIEYFENKAQVKLQQLLNH
FT                 TTSRILEMQYETFKANTNSIECQLIFSYGYDGSTGQSIYKQRYEEIGAVYD
FT                 GSLFVTTIVPLKLVDNEQKIIWINRSPQSIRFCRPLKIEFIKETRELILAE
FT                 KENLDTQTRNLHIYLHKINNINIFVKYVGQMTLIDGKVLNILTGCNSCQCC
FT                 PICAAKPTHLMNVNDFNSDIFDAKSQTLQFGISPLHAWIRFFEFVLKLAYR
FT                 ADLKTWHVKDFDKPKLVERKHFIQKQIMEKMGLNVDKPLPNGSGNSNDGNT
FT                 AKRAFSNTALLSSILNIDYDILYSFYIILITISSEYEIDSEKFKTFCKNVF
FT                 LAYQNKYPWYPMSPTVHKVLVHGHQIIDNCLVPVGCLGEHASESRNKLYKS
FT                 DRRRHARKCSRLDTMTDIFNRALDTSDPLLSSIYLKERQRKNKNKNMPQEV
FT                 ISLLKSPCVGSDHDDHGDCQDIDESEEDDERELQQKDHELDVIASDKEFF"
XX
SQ   Sequence 3014 BP; 1067 A; 451 C; 524 G; 972 T; 0 other;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaaatt gatggcaaat cattttgcaa catttgtggt ttatatttcc       240
     tcagagaatt aaaaaagttt aaagtgttgt catggaaaac agtagcacag gtatgtagat       300
     ttgtagttca ctaacatttt tgtgtatgtt atatgttttt gtgtagttgt atcgtgtttt       360
     gtttatgtgc cttttttaca gtcaacttaa caaatgtagc tgtgtttcgt ggaatataac       420
     ttttgtatgg caaaccactt caaaaaaatt ttaacggcaa gttattaact aacatgtgta       480
     taatattata caactagttt catatgctcc tttttgttcc tttttgaaaa aattacgttt       540
     ttgtagatga atacttgttt gggcatgcag agctgctaga catttggagc aacaatagtc       600
     gctctgagga tgcagttagg cagcatatat ttaaaaaaat tggtcagaat aatttaaatg       660
     aatgttctat ttcattggta aataaaaaag ttaagtcctt ctttgattac ataaggaaac       720
     atttgccagg ttgcaataga tcgttggaca ggttgaagaa aaaacacttc aaatggctgg       780
     catctagtat tagtataatc gctgattgca aaactccaaa actagtttat gaaaaggcta       840
     atgaccgact taaacgaaaa ttagcttcgg accttttcgg acctgaaaat aatacttctg       900
     taccattact cttgcatgct gcttcagttt cgtctaaaaa aggaaatgaa aaggacatgg       960
     cagttgtatt aaaagcagct ggtaacagcg ataatatcaa taatataaaa agaaaaatgt      1020
     tctcttctga gcccacacaa atgtccgtcg acaatgcatt agccttttta tttgaaaacg      1080
     gatttacaaa aagccaatac atcaatttaa aacggaatac aaaagtacac ggctttgata      1140
     tttacccatc atatcctgat gttcttaatg ctaaactaaa gcttagacca aatggcatcg      1200
     agtattttga gaataaggcg caagttaagt tacaacaact cttaaaccac acaacttcgc      1260
     ggattcttga aatgcagtat gaaactttca aagcaaatac caactcgata gaatgccaat      1320
     taatatttag ctatggatat gatggatcaa ctggtcagag tatttataag caacgttatg      1380
     aggaaatcgg tgctgtatat gatggatcgc tgtttgttac tacaattgtg ccattaaaat      1440
     tagtagacaa tgaacaaaaa ataatttgga tcaacagatc gccacaatct atacggtttt      1500
     gtcgtccttt aaaaattgaa tttattaagg aaactcgaga gcttatatta gcagaaaaag      1560
     aaaacttgga tacccagact cgtaatctgc acatatattt gcataaaata aacaacatta      1620
     atatatttgt aaaatatgtc ggtcaaatga cactaataga cggtaaagtc ttaaacatat      1680
     taacaggatg taactcttgc caatgttgcc cgatttgcgc agcaaagcca acgcatttaa      1740
     tgaatgtgaa tgattttaat tcagatattt ttgatgctaa atctcaaact cttcagtttg      1800
     gaataagccc tttacatgcg tggattcgct tctttgaatt tgttttaaaa cttgcataca      1860
     gagctgatct taaaacttgg catgtaaagg actttgataa acctaaatta gtggaacgaa      1920
     agcattttat acaaaaacaa attatggaga aaatgggtct caatgtggac aagccgttac      1980
     cgaatggaag cggaaattca aatgatggca atacagccaa aagggcattt tctaatacag      2040
     ccttactgtc gtcaatatta aatattgatt acgacattct ttatagcttt tatattattt      2100
     taataacgat ttcctcagaa tacgaaattg actcagaaaa atttaaaaca ttttgtaaaa      2160
     atgttttttt ggcctatcag aacaaatatc cttggtatcc tatgtcacct actgttcaca      2220
     aggtgttagt tcatgggcat caaattatag ataattgttt ggtgcctgtt ggctgtcttg      2280
     gtgagcatgc gtccgaatcg aggaacaaat tatataagag cgatcggaga agacatgcaa      2340
     gaaaatgcag tcgcctagat actatgaccg atatttttaa cagagctcta gatacgtctg      2400
     atcctttgtt gtctagtatt tatctaaaag aaagacaaag gaaaaataaa aacaaaaata      2460
     tgccgcaaga ggtcatttct ctacttaaat caccatgcgt tggaagcgat catgatgatc      2520
     atggtgattg ccaggacatc gacgagagcg aggaggacga tgaaagagaa cttcaacaga      2580
     aagatcatga acttgatgta atagcctcag acaaagagtt tttttaaatt aataaataat      2640
     aagttgaatt tttttgtaag tataatagca taacaatgac gtatgataaa tttatttttt      2700
     aatttcagga caaaatgatt tggaccataa tttacatctt aatatgattt tattttattt      2760
     tattttctat atataatatc aataaaatat ttaattaaat acagatacaa aaatattttt      2820
     tctttggtaa ggtaaatatt tttatggcat atcggccaga tcgtttatat ggcagctata      2880
     tgaaagttga ccaaatcact tgaaattttg tgaatcatct tgggggaagt aaagagtaac      2940
     acaaaccaaa tttggtgaag ataggtcatc atttcgaatt tctgccaaaa aaaaacacat      3000
     aaaaaaccac tgtg                                                        3014
//
ID   Transib1N1_AA repbase;    DNA;    INV; 3520 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A non-autonomous Transib DNA transposon family from Aedes
DE   aegypti.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib1N1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-3520
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1312-1312 (2011).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. 5-bp TSDs; usually CANTG. TIRs are
CC   860 bp long. Both termini are >90% identical to those of
CC   Transib1_AA. The insertion of DNA-TA-8_AAe-like transposon is
CC   masked by x.
XX
SQ   Sequence 3520 BP; 942 A; 538 C; 530 G; 969 T; 541 other;
     cacactggtc caggaagcta atttaggcgg acatgaggtt ttcgtcaaga tttattgatt        60
     ttagagccat agtttattct gagaatatgt tcagaatttt cagtactaca aaatgtacgg       120
     aacaaaaatt tttttacggt gatcgcaaga gtgacgcata cgccaacttt tttattttaa       180
     cgaatcgtaa gttggtatgt tcagcaaagt tgtagcaaat gatcatagaa acaactttgc       240
     cgaacaaact ttttctcggt tttgcttcag agccgagata attaagtatt tttaataaaa       300
     aatcgttttt tgctcttaag tgttttattt tttagtttta ttggcctact atgttctaca       360
     aagtttttat acttatcatt tgctacaact ttgctgaaca taccaaagtt gtatttctta       420
     tggttttcat gttatttgag tttttcatct taaaattagc tattttgtat gccttgtatc       480
     tcaactatga gcacctcaaa aaaatatatc tttccaccaa atgattttgc agtctttcaa       540
     gtacctgtga gcaaaatttg gagaagatga tatttttcta tctcgtttaa aatcgatttt       600
     actaatagac gatatgagat aaatccatat ttattgaata ttcatacatg ttcaactcac       660
     aaaagtcatg gctacctaag catatcaaac caaaggtaac acgtgtattt atataggaat       720
     ataaagtaca tcgtttttca gttgttttcg attaacttgg aagcttctgc aagaaattca       780
     tcgtcttttc ctctacctgt atttaatcta ttcctaagca agatcaccgg gttggaagtc       840
     aacataagcc gtataaaata ggatgtcaat gctagtaatg gaccccttag tagctgaaat       900
     tcattctcga cgcctttccg caattatata tcaggcagat atacattttg tagagtctaa       960
     taacaagttc aatgtcttta cttcacagta cacccatgca acatacaaaa tcatacgatt      1020
     ttcccagaga aatatacatt taaaactgtt gtccgaatgc ctcgaatggg agggtccata      1080
     ataggattgt ttacaaattt gacgttgcgt attatgggcc ctccatttga ttcccatgta      1140
     atccggctcg ctgccgacga gcctattatg gacccacctg gaaatgcgta ttatggaccc      1200
     tcttgtgtgg tttcatttac aaaactgttc aaatatctgg atttatgcgc ctcaaaccaa      1260
     atattttgcc tgaaactgct gactaacaat gcaatcgaag ttcccccggt ggattttcat      1320
     aggaataagg ttgctttgag tgttaattta tgtttttctg tagggggtcc ataatacgca      1380
     aagggtccat aaccggcatc gactccctac atacacaaaa tttacagtcc gattgaattc      1440
     tgtggcatga ttttcccaga atcttctgat ggattccacg tttcatgttt ttctttggta      1500
     atgcggcatg ccggacaaca ccacttccgt gcaatagttg tagacgtatc agtaagtgta      1560
     acagcattct aaaggatcga acctcttcca gctggtagga actcaaatgg tctaaccgga      1620
     tgccgccttc taagggaagt agacattxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1680
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1740
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1800
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1860
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1920
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      1980
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2040
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2100
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      2160
     xxxxxxxxxx xxxxxxxxxx xxxxgtgtat ttctttcact actggactgc gaagtgcggc      2220
     ctcataagts cgaaagtgtg aataaaagtg agggattgca ttgaatcctg ttggtgtctt      2280
     cagagcactt attcttcgat ttacgaagaa taagtccccc gaagacacct acccgatttg      2340
     attcaattgc gcacttttgt tagcgtttcc gcacttgtaa taacttcttt tcacggatct      2400
     caatcatttt aaaagtggtc aactttaatc ggaagattaa cgaggaggca tttgaacagt      2460
     ttttgtcaga aacgtactgt tagtatcgcc agttctacga ttggtacgta ctctctccaa      2520
     cggtgcaaaa actactttcg catggagtga tgttgtccgg catgccgccg aagaagcata      2580
     aaaaatgcgg aataaatcca tcagaagatt ctgggaaaat catgccacag aattcaatcg      2640
     gactgtaaat tttgtatatg tattttatac ggcttatgtt gacttccaac ccggtgatct      2700
     tgcttaggaa tagattaaat acwggtagag gaaaagacga tgaatttctt gcagaagctt      2760
     ccaagttaat cgaaaacaac tgaaaaacga tgtactttat attcctatat aaatacacgt      2820
     gttacttttg gtttgatatg cttaggtagc catgactttt gtgagttgaa catgtatgaa      2880
     tattcaataa atatggattt atctcatatc gtctattagt aaaatcgatt ttaaacgaga      2940
     tagaaaaata tcatcttctc caaattttgc tcacaggtac ttgaaagact gcaaaatcat      3000
     ttggtggaaa gatatatttt tttgaggtgc tcatagttga gatacaaggc atacaaaata      3060
     gctaatttta agatgaaaaa ctcaaataac atgaaaacca taagaaatac aactttggta      3120
     tgttcagcaa agttgtagca aatgataagt ataaaaactt tgtagaacat agtaggccaa      3180
     taaaactaaa aaataaaaca cttaagagca aaaaacgatt ttttattaaa aatacttaat      3240
     tatctcggcw ctgaagcaaa accgagaaaa agtttgttcg gcaaagttgt ttctatgatc      3300
     atttgctaca actttgctga acataccaac ttacgattcg ttaaaataaa aaagttggcg      3360
     tatgcgtcac tcttgcgatc accgtaaaaa aatttttgwt ccgtacattt tgtagtactg      3420
     aaaattctga acatattctc agaataaact atggctctaa aatcaataaa tcttgacgaa      3480
     aacctcatgt ccgcctaaat tagcttcctg gaccagtgtg                            3520
//
ID   Transib1_AA repbase;    DNA;    INV; 3683 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   11-OCT-2010 (Rel. 15.11, Last updated, Version 2)
XX
DE   Transib1_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; TRANSIB superfamily; DDE-class; TRANSIB4;
KW   Transib1_AAp transposase; Transib1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3683
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
RN   [2]
RP   1-3683
RA   Kojima K.K. and Jurka J.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (11-OCT-2010).
XX
DR   [1] (Consensus)
XX
CC   [1] Transib1_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib1_AA encodes remnants of the Transib1_AAp transposase.
CC   The transposase is not perfectly recovered since the genome
CC   harbors only a small number of Transib1_AA copies, which are
CC   damaged by mutations.
CC   Conceptually translated Transib1_AAp transposase:
CC   DLAALLIREQKLXSLIDFVRQRFPNADTSNKNTRKQLRCFTLHFRNLWRKSSRSKERFFGANTVWLDGTV
CC   VLETKERKSEKRKLKAFSELCRRSKLRRVQALTENHTTQELVTASALSVARDGSRNTGKRIEHLAQSSKS
CC   ASEPTGNIPTVEEYSPEQALCFICRNNFSRMQYQDVRMTTLEKGISSYPSCNKVLLAKQDTYPEGITVNA
CC   SCAKVPLQNLIDHTIQRLIKFLNIDMLLDDVFQVVFKWGCDGSSNHSRYKQVFLNEDSDGELKEYNDSHI
CC   FAISLVPIQVLRRRPENNDQDVIWRKELPSSVSLCRPVKLLIAADLRRAEVREMDSQIQKLVPTQVNVKG
CC   VAVDVSAKLILSMVDTKVVNDLAGTSTQQCFICLRSGKRLNDSLGDQIFNAPDLLKCVFSPLHAQIRTME
CC   LLLNISYRLTLPKPTWRVSKSSSILKDRQVSIRKAFKERLGLRLNEPLPGGGNSNDGNTARRFFREVDTV
CC   AEITGLDKNLLFRFSIILKVVNSNREIDVEAFEHFLSETYCLYRQLYDWYVLSPTVHKLLLHGSDIVRHA
CC   ALPLGMLSEEAQETRNKSIRRFRENHARKFNRTVNFEDVFNATYVDFPPGDLAYE.
CC   [2] Consensus update. ~97% identical to consensus. 5-bp TSDs;
CC   usually CANTG. TIRs are ~690 bp long.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(847..1477,1569..1728,1788..2940)
FT                 /product="Transib1_AA_1p"
FT                 /note="transposase."
FT                 /translation="MEVTRRDLAALLIREQKFQSLIDFVRQRFPKADTSNK
FT                 NTRKQLRCFTLHFRNLWRKSSRSKERFFGANTVWLDGTVVLETKERKSEKR
FT                 KLKAFSELCRRSKLRRVQALTENHTTQELVTASALSVARDGSRNTGKRIEH
FT                 LAQSSKSASEPTGNIPTVEEYSPEQALCFICRNNFSRMQYQDVRMTTLEKG
FT                 ISLYPSYNKVLLAKQDTYPEGITVNASCAKVPLQNLIDHTIQRLIKFLNID
FT                 MLLDDVIQVVFKWGCDGSSNHSRYKQVFLNEDSDGELKEYNDSHIFAISLV
FT                 PIQVLRRRPENNDQDVIWRNELPSSVSLCRPVKLLFRKENTDLTRAEVREM
FT                 DSQIQKLVPTQVNVKGVAVDVSAKLILSMVDTKVVNDLAGTSTQQCFICLR
FT                 SGKRLNDSLGDQIFNAPDLLKCVFSPLHAQIRTMELLLNISYRLTLPKPTW
FT                 RVSKSSSILKDRQVSIRKAFKERLGLRLNEPLPGGGNSNDGNTARRFFREV
FT                 DTVAEITGLDKNLLFRFSIILKVVNSNREIDVEAFEHFLSETYCLYRQLYD
FT                 WYVLSPTVHKLLLHGSDIVRHAALPLGMLSEEAQETRNKSIRRFRENHARK
FT                 FNRTVNFEDVFKRLMLTSDPVISLTNRRNTGRGKDNEFPAEASKLIKNN*"
XX
SQ   Sequence 3683 BP; 1204 A; 655 C; 707 G; 1117 T; 0 other;
     cacactggtc caggaagcta atttaggcgg acatgaggtt ttcgtcaaga tttattgatt        60
     ttagagccat agtttcttct gagaatatgt tcagaatttt cagtactaca aaatgtacgg       120
     atcaaaaaaa tttttacggt gatcgcaaga gtgacgtata cgccaacttt tttattttaa       180
     cgaatcgtaa gttggtatgt tcagcaaagt tgtagcaaat gatcatagaa acaactttgc       240
     cgaacaaact ttttctcggt tttgcttaag agccgagata attaagtatt tttaataaaa       300
     aatcgttttt tgctcctaag tgttttattt ttcagtttta ttggcctact atgttctaca       360
     aagtttttac actcatcatt tgctacaact ttgctgaaca taccaaagtt gtatttctta       420
     tggttttcat gttatttgag tttttcttct taaaattagc tattttgtat gccttgtatc       480
     tcaactatga gcacctcaaa aaaatatatt tttccactaa atgattttgc aatctttcaa       540
     gtacctgtga gcaaaatttg gagaagatga tatttttcta tctcgtttaa aatcgatttt       600
     actaatagac gatatgagat aaatccatat ttattgagta ttcatacatg ttcaacacac       660
     aaaagtcatg gctacctaag cacatcagac caaaaggaac acgtgctcta tgtgtcaaca       720
     tttcaaaaac gaattatagc aaaagctctt agaatatatt tctctcttcg cattgattct       780
     actattacct ggtaaaacgg catatcatag taaccattaa aaagcttgtc ttagtcagtt       840
     accagcatgg aagtgacacg tcgggatttg gctgctcttc taatacgaga acaaaaattt       900
     caaagtttga ttgattttgt tcgccaacga tttccgaagg ctgacactag taataaaaat       960
     actagaaaac agctcagatg ttttacgcta cattttcgta atctgtggag aaaaagtagt      1020
     cgttcaaaag aacgtttttt tggtgcaaat acagtttggt tggatggtac agtggtgctg      1080
     gaaaccaaag aaagaaaaag tgaaaaaaga aaacttaagg cattttccga actgtgccgg      1140
     aggagcaaac tgcggcgtgt acaagcattg acagaaaatc acacgactca agagctcgtt      1200
     acggcatctg cgctgagcgt tgcacgcgat ggttctcgta acacaggtaa aagaatagaa      1260
     catcttgcac aatcgtcaaa gtctgcatca gagcctaccg gaaatatacc tactgttgag      1320
     gaatattcac cggaacaagc cttgtgcttc atatgccgga acaatttttc aagaatgcag      1380
     tatcaagatg tccgaatgac tacgttagaa aaaggaattt ctttgtatcc tagttacaac      1440
     aaagttctac tggccaaaca ggatacatat ccggaaggta atgtgtcaat ttgaatgatt      1500
     gtaattgcca aaggcgtcta aattaagaaa taagttttgt tcattctttc attcttcaac      1560
     catactaggt atcactgtga acgcatcttg tgctaaggtt ccattgcaaa atttgattga      1620
     tcatacgatt caacgactca tcaagttcct aaacatcgac atgcttttgg atgatgtgat      1680
     tcaggtggtt tttaaatggg gttgcgatgg cagtagcaat cattcaaggt attaaggtat      1740
     aataaatttg taactcaaca ttttatacgt ttatttgatc acttaaggta caagcaagtg      1800
     tttctaaacg aggacagcga tggtgagctg aaggaataca atgattcgca tatatttgcg      1860
     atttcattgg ttcctataca agttctacgt cggcggccag aaaacaacga tcaagatgtg      1920
     atctggagaa atgagcttcc atcgtcggtg tcactttgcc gacctgttaa gctgctgttc      1980
     cgtaaggaaa acactgattt aacaagagct gaagtaaggg agatggacag tcaaattcag      2040
     aaacttgtcc caactcaagt aaacgtaaag ggagttgctg tggatgtttc agccaaacta      2100
     attttatcaa tggttgacac aaaggttgtc aatgacttag cagggacaag tacacaacaa      2160
     tgttttattt gtctaagatc aggaaagcga ttgaatgatt cccttgggga tcaaatcttc      2220
     aacgctcctg atttattgaa atgtgtattt tctccccttc atgctcaaat tcgtactatg      2280
     gaattgttgc ttaacataag ctaccgattg acgttgccca agcctacgtg gcgtgtcagc      2340
     aagagtagta gcattctaaa ggatcgccag gtttccatac gaaaagcttt caaagaacgg      2400
     ttgggactga gattgaacga acctcttcca ggtggtggga actcaaacga tggaaacacg      2460
     gcacgtcgct ttttccggga agtagataca gtagcggaaa taacgggact tgacaaaaac      2520
     ctcctattcc ggttctcaat cattttgaaa gtagtcaact ctaatcggga gattgacgtg      2580
     gaggcatttg aacatttcct gtcagaaacg tactgtttgt atcgccagtt gtacgattgg      2640
     tacgtactct ctccaacggt gcataaacta cttttgcatg gaagtgatat tgtccggcat      2700
     gccgcattac cattaggaat gctgagtgaa gaagcgcagg aaacgcggaa taaatccatc      2760
     agaagattcc gggaaaatca tgccagaaaa ttcaaccgaa ccgttaattt tgaagatgta      2820
     ttcaaacgac ttatgttgac ttccgacccg gtgatctcgc tcacgaatag gcgaaatact      2880
     ggcagaggaa aagacaatga atttcccgca gaagcttcca agttaatcaa aaacaattga      2940
     aaaactatgt acttttcctt tttttataaa tacacgtgtt atctctgggc tgatgtgctt      3000
     aggtagccat gacttttgtg agttgaacat gtatgaatat tcaataaata tggatttttc      3060
     tcatatcgtc tattagtaaa atcgatttta aacgagatag aaaaatatca tcttctccaa      3120
     attttgctca caggtacttg aaagactgca aaatcattta gtggaaaaat atattttttt      3180
     gaggtgctca tagttgagat acaaggcata caaaatagct aattttaaga agaaaaactc      3240
     aaataacatg aaaaccataa gaaatacaac tttggtatgt tcagcaaagt tgtagcaaac      3300
     gatgagtgta aaaactttgt agaacatagt aggccaataa aactaaaaaa taaaacactt      3360
     aggagcaaaa aacgattttt tattaaaaat acttaattat ctcggctctt aagcaaaacc      3420
     gagaaaaagt ttgttcggca aagttgtttc tatgatcatt tgctacaact ttgctgaaca      3480
     taccaactta cgattcgtta aaataaaaaa gttggcgtat acgtcactct tgcgatcacc      3540
     gtaaaaaatt ttttgatccg tacattttgt agtactgaaa attctgaaca tattctcaga      3600
     agaaactatg gctctaaaat caataaatct tgacgaaaac ctcatgtccg cctaaattag      3660
     cttcctggac cagtgtgcat gtg                                              3683
//
ID   TRANSIB1_AG repbase;    DNA;    INV; 4303 BP.
XX
AC   .
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   TRANSIB1_AG is a TRANSIB-like DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   TRANSIB superfamily; TRANSIB1_AG; transposase.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4303
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB1_AG: a family of TRANSIB-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 26-25 (2002).
XX
DR   [1] (Consensus)
XX
CC   TRANSIB1_AG is a family of DNA transposons that belongs
CC   to the TRANSIB superfamily originally identified in Drosophila
CC   (see
CC   description of TRANSIB1-TRANSIB4 in drorep.ref).
CC   Members of this superfamily encode the TRANSIB-like DNA
CC   transposase
CC   and generate 5-bp target site duplications.
CC   The TRANSIB1_AG consensus sequence was reconstructed based on
CC   multiple alignment of several copies of this transposon
CC   identified
CC   in the sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   TRANSIB1_AG
CC   occurred recently (in the last 1 Myr).
CC   TRANSIB1_AG has 9-bp terminal inverted repeats. The consensus
CC   sequence encodes a 708-aa TRANSIB1_AGp transposase (positions
CC   1539-3665). TRANSIB1_AGp is 29% identical to the TRANSIB2p
CC   transposase
CC   encoded by TRANSIB2 from D. melanogaster.
CC   The A. gambiae genome harbors several families of TRANSIB-like
CC   DNA
CC   transposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           1539..3662
FT                 /product="TRANSIB1_AGp"
FT                 /translation="MIEILLFNDFFNCVQHAHLIFFPLIQNVTQITNRELV
FT                 LQFNFQNSAKLNVENAFRFVCETLESSDIDEDAVKQKLNLLERRAKHLWKK
FT                 TNSDRNKFDRANFAWLNTQFLCDFKREKITIIQSKKLFIELTNRQKRRRIA
FT                 QMSSSVKCESVDEALMFARKIATQQKNTYVVNALTNMINCSTPAMKSGEEA
FT                 LSFLIEGNFSKKQYCIIRKECPSKFRSYMEILKAKKTCSPSAESLHVTESS
FT                 VKVDLQSLVHMTTKSIVRMEKDKIFAYMDSRKLNHLKLILLMAWGMDGSSG
FT                 HSQYHQNYSNETADDSNVLITSLSPINLTVEGDSSNEIMWSNLTPQSVRFC
FT                 RPISMIFAKENRDLVINKKSEIEAEIEALRPYLFETENREKSVIVEFRFVL
FT                 SMIDGKILSYITQIPTSCCPICGSKPTEMQNVKYIDNGFQPSPGSLIHGIS
FT                 PLHCWIRVLECILHISYRLDFTKWKVTAHYREAYNNRKRIVLRDLFTKFGV
FT                 KVDQVRAGSSGTSTTGNVCRRIFSNPKLASEALGVDEDLIRRFRNILIAIN
FT                 SERPFNAETISLYCKDTYYKFINLYSWYYIPATVHKILAHAGELILNTPVP
FT                 LGSIGEECGEARHKIFRKDREYHARKCTRESNLVDVFMRAIHSSDPFISSL
FT                 SLQNRVQRKMSDNYPEEVKLFFEFEQLNSNENVPPLEESFEDIMDTLDKMN
FT                 EPLVQDMG"
XX
SQ   Sequence 4303 BP; 1502 A; 707 C; 737 G; 1357 T; 0 other;
     cacagtggtc taaaggcgga ctttatggaa aagtattttt tctatttatt tctatccctg        60
     ttatttttaa cttaaactag ctatagttgt ttagtataaa gttgaaattt caaattttcg       120
     aatttcattg atttgttcaa aagttatggc gctttgaatc taaaagtctt ggctaattgg       180
     ccgtttttaa gccgtatcca ctgacatgat gtatttgctt caagcttcgt ttgtgttcta       240
     cctaaaaatt taaataatac atcgttggaa aggtattttt ttcgtcttta agaatatgtt       300
     aatagactta agctactgtg acgaataaaa aagttactac aaactatata tagaaaaagc       360
     tgaaaaatat acaaataagc caatattata gagcgccatt ttatttcctg taacttcctg       420
     ttgttgctac ccacattgaa ttaaagttta acactttcta taacttttgt gaaaaaattt       480
     cggtcccctt ttgtcccctc taagcgctgc agcaaattaa aagttgattg attgaaatat       540
     taaatgcaac aaacagagct aaaaatacga cattgttttc cgattaacta cactgtggtt       600
     attcttgagg tacagttgtc attttttaca acctaacaac ataccctgca tgggttcaaa       660
     ccccgtacag ttcgtgctcc cttcctcctg cttcactata tgcaaacctg gtcaatttgt       720
     tatggacaca caaatcagtc aaagacattt tagccgcaac gttgcttaca cagtattgat       780
     attgatagta ttgtattgat aaatttagtt cccctttttt cttactgttt ttaaataacc       840
     aacaaactaa aataaaagtt ataacattta tctatttttt tcttctgttt gagcaaaagc       900
     aaacactatc tgttgcttgc tataagtatt gtattgcaaa taatcatacg aagggttcgt       960
     taatctctaa atctatcctg ggtttactag tccgaacaat aactgtcccc atgtttatta      1020
     caatattttc ctcaaataaa caactcagca ccaggataca tgtgattggc tgaggtggct      1080
     attcaaaagg atcattgtta taaatatgtg gacagttgtt cattgcattg gaaaccctgc      1140
     aatacgaaca gccgaataaa tgaaacgtag gctaacggta ctatttgagt accttcaccg      1200
     acaaataaag tctacttcaa ttcaatatac gaaatgcata ctgatacaga tatacaagta      1260
     gtagtaaaag taaggatcga ctgatcgcta gagcaataca ataaaaatcg ttaagcttat      1320
     cgtattctca tgagagagta cgaatactaa tgcacactga tagcacaatg cgttagatat      1380
     ttttgattct gatgcgtatc gtagtagcaa gaccgacgtt aatttgatca caagtgaaaa      1440
     atattccaga ccgtataaat tgcgcagcta gtgaatttgg gcacttttat cttgtcctaa      1500
     caatttaata acattatgca ggtagataat acacaccaat gattgaaata cttttattta      1560
     acgatttctt caattgcgtt caacacgcac atctaatatt ttttccatta atacagaacg      1620
     taacccaaat taccaaccgg gagcttgttt tgcagtttaa cttccaaaat tcagctaaac      1680
     tgaacgtaga gaatgctttt cgtttcgttt gcgaaacatt ggaatcgtca gatattgatg      1740
     aagatgcagt aaagcaaaaa cttaacttgc tggaaagacg agccaagcat ctgtggaaaa      1800
     aaacgaacag cgataggaac aaatttgata gggctaattt tgcgtggttg aacacacaat      1860
     ttctctgtga ctttaagaga gaaaaaatca ccatcataca gtcaaaaaaa ctctttattg      1920
     aacttacaaa caggcaaaaa cgaagaagaa tagcgcaaat gtcttcatca gttaaatgtg      1980
     aatccgtaga tgaggcattg atgtttgcaa gaaaaatcgc aacacagcaa aaaaatacgt      2040
     atgttgtaaa tgcgttaaca aacatgatta attgttctac tcctgcaatg aaatcaggag      2100
     aagaagcctt atcatttttg atagaaggaa atttctccaa aaaacaatat tgtatcatta      2160
     ggaaagagtg tccatcaaag ttccgtagct acatggaaat acttaaagct aaaaaaacat      2220
     gttccccgtc ggcagagtca ctacatgtaa ctgaaagctc tgtgaaagtt gatttacaat      2280
     cacttgtaca tatgactaca aaaagcattg tcagaatgga aaaggacaaa atatttgcct      2340
     atatggatag ccgaaaactc aaccacttaa aattaatttt actgatggca tggggtatgg      2400
     acgggtcatc aggccattca caatatcatc agaactattc taatgaaact gccgacgata      2460
     gtaatgtgtt gataacatca ttaagtccca tcaacttaac tgtcgaaggt gattcttcaa      2520
     atgaaatcat gtggtcaaat ttaactcctc aaagtgtccg attttgtcga ccgatttcta      2580
     tgatctttgc aaaagaaaat cgtgacttag tgattaataa aaaatctgaa attgaagcag      2640
     aaattgaagc acttcggcca tatttattcg aaactgaaaa cagggaaaaa tcagtaattg      2700
     tagagtttag atttgtcttg agtatgattg acggaaaaat cttatcatac atcactcaaa      2760
     ttccaacgtc ttgctgcccg atatgtggat caaagcccac agaaatgcag aatgtaaaat      2820
     acatcgataa cggattccaa ccttctccgg ggtctttgat tcatggaata tcacccctgc      2880
     actgttggat aagagtttta gagtgtattt tgcatatatc atacagatta gattttacaa      2940
     aatggaaagt gactgcgcat tacagagagg catacaataa tagaaaacgc attgttttgc      3000
     gtgatttatt tactaaattt ggagtgaaag tagaccaagt tcgagcaggt tcatcaggca      3060
     caagcactac aggaaatgtt tgcaggcgaa tattttccaa ccctaaactt gcaagtgaag      3120
     cgttaggtgt tgatgaggac ttgataaggc ggtttagaaa tatattaata gctatcaata      3180
     gtgaacggcc ttttaacgca gaaacgatta gtttatattg taaggatact tattataagt      3240
     ttattaattt gtatagctgg tactacatac cagcaactgt acataaaatt ttagcacatg      3300
     ctggagaact aattctgaac actcctgttc cgttaggaag tataggggaa gagtgcggag      3360
     aagcacgcca taaaatattc cggaaagata gggaatacca tgcacgcaaa tgcactagag      3420
     agagcaatct ggtcgatgta tttatgcgtg caatacacag cagtgatcct tttattagtt      3480
     cactttcttt gcagaatcgt gtgcaaagaa aaatgagcga caactatcca gaggaagtca      3540
     aacttttctt tgagtttgag caattaaatt caaatgaaaa tgtacctcct cttgaggaat      3600
     cctttgagga tattatggac actttagaca agatgaatga gccactcgta caggatatgg      3660
     gttaaaagtt atattttata agttggtaga caataaatca tattaggaat cgactttgtt      3720
     tcaatgtaga acaaggtata taaaataaat tatactttta ataatttaaa ttaaagacgt      3780
     tacattttat aggaagtata cgatgaaatt gactaccctt tttatatttt tttccacaat      3840
     tttttaattt aaatcaagtg tttcattcaa tatgtttcat atcaaaatag tatgttcaat      3900
     attttttaat caattgattt catttgaaaa tcgacgattg aaatgaaaag aataaattaa      3960
     ttatttattt tataaatatt tttttaattt gaaatttgtc attgtaaata aacagttgtg      4020
     ggcaacagga aacagtaaca tgaaacatta aaataataat aattaaaaat gtttacctgt      4080
     acccaaattg aaactacgag atcagtttaa gattaatttt tttactaggg ttatactgaa      4140
     gcttaaaaaa gattgtctag tggcgccatc tggatgtcca atataattca aaattctttg      4200
     taattgtctt agatgtgaaa ctaaagtcaa tcgatactga aataggccaa acactgacag      4260
     taaatagcaa tgtcctgcga ttgctctgaa gcaaaccact gtg                        4303
//
ID   Transib1_Dmoj repbase;    DNA;    INV; 3058 BP.
XX
AC   .
XX
DT   27-AUG-2008 (Rel. 13.09, Created)
DT   27-AUG-2008 (Rel. 17.07, Last updated, Version 2)
XX
DE   A new family of Transib elements in Drosophila mojavensis.
XX
KW   Transib; DNA transposon; Transposable Element; transposon;
KW   autonomous; Drosophila mojavensis; Transib1_Dmoj.
XX
NM   Transib1_Dmoj.
XX
OS   Drosophila mojavensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; mulleri subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3058
RA   Styles P.;
RT   "Transib1_Dmoj: a new family of Transib elements in D.
RT   mojavensis.";
RL   Repbase Reports 8(9), 908-908 (2008).
XX
DR   [2] (Consensus)
XX
CC   Transib1 is a family of autonomous transposons in Drosophila
CC   mojavensis and Drosophila willistoni. The 3058bp consensus
CC   sequence was obtained by multiple alignment of 11 sequences. The
CC   consensus sequence encodes a 682 amino acid transposase, with
CC   some homology to Transib transposases, in a single ORF between
CC   positions 499 and 2547. Transib1_Dmoj has 40bp terminal inverted
CC   repeats. Transib1_Dmoj appears to be currently active in D.
CC   mojavensis, with nine copies showing between 99.84% and 100%
CC   identity to the consensus sequence, with an average of 99.93%.
CC   Two copies are more divergent, with 94.50% and 96.07% identity to
CC   the consensus. Transib1 appears to have been involved in a
CC   horizontal transfer event between D. willistoni and D.
CC   mojavensis. The identity between the consensus sequences in these
CC   two species is 86.99%.
XX
FH   Key           Location/Qualifiers
FT   CDS           499..2547
FT                 /product="Transib1_Dmoj_1p"
FT                 /translation="MSCIYPHIILEIFFLATMSVSKRELFSVWHMETDVSK
FT                 KTFAVETYIYTNIFDKNKYDDSQCAKIDKKIKNFITKLTCKWKENHRILKN
FT                 FELNNQEWLDDDIILVDRNSNVGRPDLSFEDSQEKTKKKKISDIVKEIPSN
FT                 ELVSAASTSLYNCGKRSASKMINLLSTDESIPKKIKSIIQSDDKQPIKYTP
FT                 EEALALYIDGGYTKKAYTDLQRGTKMRNANIFPTYDVLRSAKKLCYPSGLV
FT                 VTDHSFEVPLQNLIDHTISRIYKAHYKDFPSIENNNGSQLTAIYKWGCDGS
FT                 SGHSTYRQNFNDLNACMVDQHMFSAYLVPLEILRGSEIVWKNAKPSSTRYC
FT                 RPLKLICQKETIDLVHDVVNNFKSQITAIQPTNITNFEVHHQFHLTMIDGK
FT                 VFSVLAESSTSVCGICGTTPKKMNDLSAIKNLPCKENLYKYGLSSLHAWIR
FT                 FLDCILHISYRLITKNWQVRSTDKAAVDMRKLEIQKNLRKEMGILVDIPKP
FT                 GGSGNTNNGNTARKFFQDAKLAAKITGVNYLLIYRFSVILRTLASGYEIDT
FT                 EVFKHYAFETAILFVDMYPWFYMPSSVHKILIHGAEIIEHFALPIGMMSEE
FT                 ALEARNKDQRKFRLNHTRKNCRNNTMEDLAHTLFISSDPFITMLAKSTVSF
FT                 SKKDRFVDKDIISLISNKDSQVELSDCETSDSD*"
XX
SQ   Sequence 3058 BP; 1125 A; 473 C; 514 G; 946 T; 0 other;
     tgcacagtgg gcgaaacggc tgatttagct ccgattaatt caaatttaaa gtaattctag        60
     ttgccaattt ctcttttgta atcgatcact aatatattcg atagaccaaa aacattaatc       120
     gcttcgattt tctctcaata ttcgcacagc tgtgaagctt agaagacaac atatgttttg       180
     ttggttgttg caatcagctt tcccgccaat tccgattgaa tcgaaaaaaa attgaataaa       240
     aattggtttt actgttttca attgaacttt ttgctgtgaa ctgaataaaa aggtatgtag       300
     ttactaacca aataaatgtt tgcgacctgt gattgtgttt cgtcccaaaa cgtaatatat       360
     taattagtac ttgaatttgt cttaacattt gctaaaaact gaactttagt agagtagaac       420
     ttttaagatt cgactggatt cgatatcaat gtgtttttaa aaaataagtc tgtgtattac       480
     gaagtgaaat cgtccacaat gagctgcata tatccgcata ttattttaga aatatttttt       540
     ttagcaacaa tgtcagtgtc caaacgagaa ttatttagtg tatggcatat ggagactgac       600
     gtttcaaaaa aaacttttgc ggttgagaca tacatctaca ccaatatttt tgataaaaat       660
     aaatacgacg atagccaatg cgctaaaatt gataagaaaa taaaaaattt cattacaaaa       720
     ttgacatgca aatggaaaga aaatcataga attcttaaaa atttcgagct aaacaaccag       780
     gaatggttag atgacgatat aatattggtg gatcgaaatt caaatgttgg gcgacctgat       840
     ctcagttttg aagatagcca ggaaaaaaca aagaaaaaaa aaatttcaga catcgtcaaa       900
     gaaattccga gcaatgagct tgtctccgcg gctagtacta gtttatacaa ctgtggaaag       960
     cgaagtgcat ctaaaatgat taatttgttg agcactgatg aaagtattcc caaaaaaata      1020
     aaatcaatta ttcagtccga tgataagcaa ccaattaagt atacaccaga ggaagcctta      1080
     gccttatata ttgatggtgg ttatacaaag aaggcttata cagacttgca gcgtggtacc      1140
     aaaatgcgaa atgcaaatat atttccgacg tatgatgttc tgcgttctgc aaaaaaactg      1200
     tgctatccta gtggtctagt agtaactgat cattcatttg aggtaccttt acaaaattta      1260
     attgaccaca caatatcccg aatatataaa gcacattata aagattttcc tagtatagaa      1320
     aataacaatg gttcccagct aactgcaata tataaatggg gttgtgatgg aagtagtggc      1380
     cactcaactt atcgccagaa ttttaatgat ttgaacgctt gtatggtcga tcagcacatg      1440
     ttttcggctt acttggtacc attagaaata ctacgaggat cagaaatagt ttggaagaat      1500
     gccaaacctt catccactcg ttattgcagg ccattaaaat tgatttgtca aaaggaaaca      1560
     atagatttgg ttcatgatgt tgtgaataat ttcaaaagcc aaataacagc aatacagcca      1620
     actaatataa caaattttga agtacatcat caatttcacc tgacgatgat agatggtaaa      1680
     gtattcagtg ttctggctga atcatcaact tcagtttgtg gaatatgtgg tacaacccca      1740
     aaaaaaatga atgatctcag tgctattaaa aacttgccat gcaaagaaaa cctttacaaa      1800
     tatggtttat ctagtttaca tgcttggatt cgtttccttg attgcattct gcatattagc      1860
     taccgactaa taactaaaaa ttggcaagtt cgaagtacag ataaagcagc tgttgatatg      1920
     agaaaattgg aaatacaaaa gaatttgaga aaagagatgg gtatattggt tgatattcca      1980
     aagcctggcg ggtcaggcaa tactaataac ggcaacacag cgagaaagtt ttttcaagat      2040
     gcaaaattag ctgccaaaat aactggagtc aactatcttt taatttatcg atttagtgta      2100
     atattacgaa cactagcatc cggatatgaa attgatacag aagtctttaa acattatgca      2160
     tttgaaactg caatattatt tgtagacatg tacccatggt tttatatgcc ttcctctgtc      2220
     cataaaattt tgattcatgg tgcagaaatt atagaacact ttgcccttcc gataggtatg      2280
     atgtcagaag aagctcttga agccagaaat aaagatcaaa gaaaatttcg attaaatcac      2340
     acacgaaaaa attgtcgcaa taacacaatg gaagacttgg cccacacact ttttatttca      2400
     tcggacccat ttattacaat gttagcgaaa tcaacagttt ccttttctaa aaaagatcgg      2460
     tttgtagata aagacattat tagtcttatt tcaaataagg actcacaagt tgagctatcg      2520
     gattgcgaaa catcagattc cgattagatg taaaattgtt ggtaatattt acgttatatg      2580
     gattgcgtac ataatcgcac gctttaagaa aaaaaaatat ataaaataaa aatatatata      2640
     ttaaaagaaa aaaaaatttg gtctattgaa cattactcta ggggaacatg cgaaagaaga      2700
     gagaaagaag acactttcga taattaaaaa aaaatgataa tgctgtccaa tttatttatt      2760
     tttttgatgg tttgtatata tatttctaaa gtaatagcaa ataaaaagaa gtattaaaaa      2820
     tgtattgaaa ttccttaaaa ttgagcgaaa ataaccatac atcgaataga acgggcttac      2880
     actatcttaa aaaaaatttt ttttaatact ttcacttaat gaaaaaattt ttttctacat      2940
     taattctgat gtgtatataa tttatctaca aaacaaaagt atccgtacaa aaatagcatc      3000
     atttttgcag aagttattaa ttaatcgccg ctaaatcagc cgtttcgccc actgtgca        3058
//
ID   Transib1_DP repbase;    DNA;    INV; 2983 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Transib1_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; transposase; Transib1_DP.
XX
NM   Transib1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2983
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib1_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 698-aa Transib1_DPp transposase
CC   (pos.
CC   270-288, 542-2616. Transib1_DP elements are characterized by 5-bp
CC   target site duplications and 41-bp terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,542..2616)
FT                 /product="Transib1_DPp"
FT                 /translation="MDFKGPDQLEFCHATLLDVWIDNGRNSTALANWIVGQ
FT                 LTECSLTNENISEINKKVKSLAIYISSNLQKCKRNMRTFRKKTFTENKEET
FT                 HSLQLGRPRLTYDEAGPRLKRKLAADVAIGYKNDTSLLIHAATMSARKSYA
FT                 NATAFLLKNVGTSESEATEAKGKLDIVEPILLTTNDALEFLLENSLSKRLY
FT                 NEIRQISKQHNFDIYPSYQNVQEAKLQLRPAGITATETMAKVALQHLLNHT
FT                 ASRIILLQEELFANFENVSSITLIASYGYDGSTGQSMYKKRFETKEPDTFD
FT                 QSLFVTTLIPLKLIDEAGTIFWNNRTPQSVRFCRPLKMEFAKETKDHILAE
FT                 KNDLDTQMKNLTPCVVTISNEKKITVSYDLHMTLIDGKVLNVLTGTKSCQL
FT                 CSICGAGPKQFMETYDTNSFKPNPRRLHYGISPLHAWLRIFELLLKISYRM
FT                 GFKKWQVRNENDKLEMIAKKKKHIQRRLWQEMGLHVDKPKQNGSGNSNDGN
FT                 TARKAFSNTKLFASILELDLELLESLHTILIAINCEFAIDALKFQNFSDKT
FT                 IRSYMLHYSWYPMSPTLHKILVHGSQIITASVMPVGCLGENASEAKNKFYK
FT                 RDRLMHARHNSRVNNMMDVFQRSMDSSDPLISSISIKKRAARHKKQTLPRD
FT                 VIELLETPHCNFPKNIQPLANDYSFDYDSNESELEDINPYSFELSVQNN"
XX
SQ   Sequence 2983 BP; 1049 A; 513 C; 533 G; 888 T; 0 other;
     cacactgggc ggaattccca aataagtggc ataaagtcga aaattttgtc gaagcaaata        60
     ttaattatat ttcaatatat tgaaagtaga atccctatat attacaaatc aataaatttt       120
     gttgctaaaa atgcaaccct gtcattctga tcaaacttca aagtcagttg attagtcagc       180
     tgattcctgc gacaaaattg gcgggaaatt tttattcact ttgagcgctt ggcaaattca       240
     cacattgcaa aaataaaata ttgtgaaata tggattttaa aggcccgggt atgtagattg       300
     aataacaaaa aacattttgt gttaaaatgt gttatatgtt atataggtta attgttttgt       360
     attgtccaaa aaaaacgaaa accaaaccaa tgtgttcgtc ttgtgtggag taaaaactaa       420
     ccttctgcgt gtttgtgcgt tatgtaatgt atgttaaaat aaagtagaaa gtgtgtatta       480
     aaagtaagta ataatccggt ttgcggcttt ttgcggctct tgcggtactt tgaactttta       540
     gatcagcttg agttctgtca tgcaacgctg ctggacgtat ggatcgacaa cggccgcaac       600
     tctaccgccc ttgcaaactg gatagttggc caattgacgg aatgttcact aaccaatgaa       660
     aacattagtg aaattaacaa gaaagttaaa agccttgcaa tttatatttc ttcgaatctg       720
     caaaagtgca agcgaaatat gcgcacattt agaaaaaaaa cattcacaga aaataaagaa       780
     gagacgcaca gtctacaatt gggtagacca aggctaactt atgatgaagc agggccccgt       840
     ctaaaacgaa aactagctgc cgatgtagca atcgggtata aaaacgatac cagtctttta       900
     attcatgcag caacaatgtc agccaggaaa tcatatgcaa atgctactgc atttttactt       960
     aaaaatgttg gcacttctga aagcgaagct actgaagcta aaggaaagct cgatattgta      1020
     gaaccaatac ttttaacaac aaatgatgct ttggaattct tgctggaaaa ttctttaagc      1080
     aaacgattat ataatgaaat tcgtcaaata agcaaacagc ataattttga catataccca      1140
     agctaccaaa atgtccagga agccaaattg caattgagac ctgcgggaat aactgctaca      1200
     gaaactatgg caaaggttgc cttgcaacat ttgttaaacc acactgccag ccgcataata      1260
     ttgttacagg aagagttatt cgctaacttt gaaaacgttt ctagtattac attaattgcg      1320
     agttacggat acgatggatc aactgggcaa agtatgtata aaaaaagatt tgaaacgaag      1380
     gaaccggata cttttgatca atctttgttt gttactaccc ttatacctct gaagcttatc      1440
     gatgaagcag gaacaatttt ttggaataat agaactccgc agtctgtaag attttgccga      1500
     ccactcaaaa tggaattcgc caaagaaaca aaagatcata ttcttgcaga aaaaaacgat      1560
     ttggacacac aaatgaaaaa cttgactcct tgtgtagtaa caatttcaaa tgaaaagaag      1620
     atcactgtct catacgacct tcacatgact cttatagatg ggaaagtttt aaacgtttta      1680
     acgggtacaa aatcttgcca attgtgttca atatgtggtg caggcccaaa acaatttatg      1740
     gaaacttatg atacaaattc ctttaagcca aatcctcggc gtcttcatta tgggataagt      1800
     ccacttcatg cttggttacg catttttgaa ttgctgctta aaatatcata tagaatgggg      1860
     tttaaaaaat ggcaagtaag aaacgaaaat gacaaattgg agatgattgc caaaaaaaaa      1920
     aaacatatac aaagaagatt gtggcaagaa atgggattgc atgtggataa gccaaaacag      1980
     aatggaagcg gaaactcgaa cgatggcaac actgcgagaa aagctttttc aaatacgaaa      2040
     ttattcgcat caattttaga actcgatttg gagttacttg agagtctgca tactatttta      2100
     atagctatta actgcgaatt tgcaatcgac gctttaaaat ttcaaaattt ctcagataaa      2160
     accattagat catacatgtt gcattactct tggtatccta tgtcaccaac tctccataaa      2220
     attttagttc atggatcaca aataataact gcatctgtga tgccggtagg ctgtcttggg      2280
     gaaaatgcgt ctgaagcgaa aaataaattt tacaagcgtg accggctaat gcacgctcga      2340
     cacaattcgc gggtaaacaa tatgatggat gtattccaaa gatctatgga ctcttcagat      2400
     cccctcatct caagtatatc cattaagaag agggcagctc gacataaaaa acaaaccctt      2460
     ccgcgagatg tcattgagct tttagaaaca ccccattgta attttccaaa aaatattcag      2520
     cctttagcta atgactacag tttcgattat gactcgaatg agtcggaatt agaggatata      2580
     aatccatatt cgtttgaatt atctgtacaa aacaactaaa tgataattta acatcaattc      2640
     ttagaaatag ttaaatagta gaataagaat ttgatcataa taagaattgt ttatcaaaaa      2700
     atttgtttta tatttttata tttaccacta ttacatcaaa attacaacag aataataaat      2760
     tcccttaaaa ttgtagtact tttttatagc tctcatgact ttcctttgtg atcacgtata      2820
     cgccttgttg ccatatatgg gctattgcgg taggcgtggt cagatgaact taaaattttg      2880
     ttcaaatatt tagagtgcta tatttattaa atacaccaag tttcagctcg atatctgctt      2940
     tattcgactt tatgccactt atttgggaat tccgcccagt gtg                        2983
//
ID   Transib1_Dwil repbase;    DNA;    INV; 3060 BP.
XX
AC   .
XX
DT   27-AUG-2008 (Rel. 13.09, Created)
DT   28-AUG-2008 (Rel. 13.09, Last updated, Version 1)
XX
DE   A new family of Transib elements in Drosophila willistoni.
XX
KW   Transib; DNA transposon; Transposable Element; transposon;
KW   autonomous; Drosophila willistoni; Transib1_Dwil.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RP   1-3060
RA   Styles P.;
RT   "Transib1_Dwil: a new family of Transib elements in Drosophila
RT   willistoni.";
RL   Repbase Reports 8(9), 909-909 (2008).
XX
DR   [1] (Consensus)
XX
CC   Transib1 is a family of autonomous transposons in Drosophila
CC   willistoni and Drosophila mojavensis. The 3060bp consensus
CC   sequence was obtained by multiple alignment of 27 sequences. The
CC   consensus sequence encodes a 672 amino acid transposase, with
CC   some homology to Transib transposases, in a single ORF between
CC   positions 499 and 2518. Transib1_Dwil has 40bp terminal inverted
CC   repeats. Transib1_Dwil appears to have been active recently in D.
CC   willistoni. Elements are on average 98.02% identical to the
CC   consensus sequence, ranging from 96.38% to 99.30%. Two point
CC   mutations at positions 847 and 848, introducing a premature stop
CC   codon into the transposase ORF, are shared by six elements, which
CC   have apparently been propagated non-autonomously. Transib1
CC   appears to have been involved in a horizontal transfer event
CC   between D. willistoni and D. mojavensis. The identity between the
CC   consensus sequences in these two species is 86.99%.
XX
FH   Key           Location/Qualifiers
FT   CDS           498..2516
FT                 /product="Transib1_Dwil_1p"
FT                 /translation="MSCIYPHIILEIIFLATMSVCKRALFTIWHTEPDASK
FT                 KTFAVETYIYTNIIDKTKFDKSQCAYIAMKIKNFIKKLTWKWKENHRICQN
FT                 FEVNNQEWLDDDLVLVDQISNVGRPKLSFGDSQGKTKKKKLSDIVKEIPSN
FT                 ELVSAASTSLYNCGKRSDESLPKKVISFIQSDDKQPINYTPEEALALYIDG
FT                 GYTKKAYTDLQRGTKKRNANIFPTYDVLRSAKKLCYPSGLEVTDHSFEVPL
FT                 QNLIDHTVSRIYKAHYKDFPSIENNNGSQLTAIYKWGCDGSSGHSTYRQNF
FT                 NDLNACMIDQHMFSVYLVPLEILRGSEKVWKNEKPSSTRYCRPLKVLCRKE
FT                 TADLVNDVVNNFKSQITTIQPTIVESFEVHHQFYMTMIDGKVFSVLAESSS
FT                 SVCGICGTTPKKMNDLSDIKNLPCKENLYEYGLSSLHAWIRFLDCILHISY
FT                 RLIIKNWQVRSTDKSAVDIRKLEIQKNLRKEMGILVDIPQPGGSGNTNNGN
FT                 TARKFFHDAKLAAKITGVNYLLNSRFSVILRTLASGCEIDTQAFKHYAFQT
FT                 AILFVDKYPWFYMPSSVHKILIHGAEIIEHFALPIGMMSEEALEARNKDQR
FT                 KFRLNHTRKNSRSNTMEDLAHTLFISSDPFITMLAKSTDKFSKKDQFLDKD
FT                 IISLILSKDAQEELSDCTTSDTD*"
XX
SQ   Sequence 3060 BP; 1110 A; 473 C; 527 G; 950 T; 0 other;
     tgcacagtgg gcgaaacggc tgatttagct ccgattaatt caaatttaaa gtaaaacttg        60
     gcgccaaaat tgtttttgca ttcgattact aacatattca atagtccaaa aacattaatc       120
     gattcgattt tctaccaata tttgaacagc agtgaagctt tgaagtcagc atatgtttca       180
     tcagctgttg ccatcagctt tcccgccaat tctgattgcg tataaaaaaa atttgtataa       240
     attagtgttg ttgctttcaa ttgaactttt tgctgtaaat taaagaaaaa ggtatgtagt       300
     tactaacaaa ataaatgttt gtgacctgtg attgtgtttc gtcccaaaat gtaatatttt       360
     ctttggtact tatatgtgtc ttaacattta ctaataaatt gaactttagt agagtataac       420
     ttttaaggtc cgactgggtt cggtatcaat gtttttttaa aaattagtct gtgtattacg       480
     aagtgaaatt gtccacaatg agctgcatat atccgcatat tattttagaa ataatttttt       540
     tagcaacaat gtcagtgtgc aagcgagcac tttttacaat atggcatacg gagcctgatg       600
     cttcaaaaaa aacttttgcg gtagagacgt acatatacac caatattatt gataaaacta       660
     aattcgacaa aagccaatgc gcgtacattg ccatgaaaat taaaaatttc ataaaaaaat       720
     tgacatggaa atggaaagag aaccaccgaa tttgccaaaa ttttgaggta aacaaccaag       780
     agtggttaga tgacgatcta gtattggtgg accaaatttc aaatgttgga cgacctaaac       840
     tcagttttgg agatagtcag ggaaaaacaa aaaaaaaaaa attgtcggac attgtcaagg       900
     aaattccgag caatgagttg gtctctgcgg caagtactag tttgtacaat tgtggaaagc       960
     gaagtgatga aagtcttccc aagaaagtaa tatcgttcat tcaatccgat gataaacaac      1020
     caattaacta cacaccagag gaagccttag ccttatatat tgatggtggt tacacaaaga      1080
     aggcttacac ggacttgcag cgtggtacca aaaagcgaaa tgcaaatatt tttccgacgt      1140
     atgatgtatt gcggtctgca aaaaaactgt gctatcctag tggtctagaa gtaactgatc      1200
     attcatttga ggtaccttta caaaatttaa ttgaccacac agtatcccga atatataaag      1260
     cacattataa agattttcca agtatagaga ataacaatgg ttcccagcta actgctatat      1320
     ataaatgggg ctgtgatgga agtagtggcc actcaactta tcgccaaaat tttaatgatt      1380
     taaacgcttg tatgatcgat cagcacatgt tttcggtgta cttggtacca ttggaaatac      1440
     ttcgtggatc agaaaaagtt tggaagaatg agaaaccttc atccactcgt tattgcaggc      1500
     cattaaaagt gctttgtcga aaggaaacag cagatttggt taatgatgtt gtaaataatt      1560
     tcaaaagcca aataacaaca atacagccaa ctattgtaga aagttttgaa gtacatcatc      1620
     aattttatat gaccatgata gatggaaaag tatttagtgt tcttgcggaa tcgtcatctt      1680
     cagtttgtgg aatatgtggt acaactccaa aaaaaatgaa tgatctcagt gatattaaaa      1740
     atttaccatg caaagaaaat ctctacgaat atggtttatc cagtctacat gcttggattc      1800
     ggttccttga ttgcattctg catattagct atagactgat aattaaaaat tggcaagttc      1860
     gaagtacaga taaatcagct gttgatatta gaaaactgga aatacaaaag aatttgcgaa      1920
     aggagatggg tatattggtt gatattcccc agccaggtgg ctcaggcaat acaaataacg      1980
     gcaacacagc gagaaagttt tttcatgatg caaaattagc tgccaaaata actggagtca      2040
     actatctttt aaattctcga tttagtgtaa tcttacgaac actagcatcc ggatgtgaaa      2100
     ttgatacaca agcctttaaa cattatgcat ttcaaactgc aatattattt gtagacaagt      2160
     acccatggtt ctatatgcct tcatctgtcc ataaaatttt gattcacggt gcagaaatta      2220
     tagaacactt tgcccttccg ataggtatga tgtcagaaga agctcttgag gccagaaata      2280
     aagaccagag aaagtttcga ttaaaccaca cacgaaaaaa ttctcgcagt aacacaatgg      2340
     aagacttggc tcacacactt tttatttcat cggacccatt tattacaatg ttagcaaaat      2400
     ccacagataa attttctaaa aaagatcagt ttttagataa agacattatt agtcttattt      2460
     taagtaaaga cgcacaagaa gagttatcag attgcacaac atcagatacc gattaggagt      2520
     aaaattgaaa aattaaaaaa aaagtatata aaatattttt gaagttgatt atatttactc      2580
     tatattgaat gattaaataa atgtatgttt taagaaagaa acatgttttt tttttaaaga      2640
     tacaagcata tattttctcg attaaacata actcttgctg aaaatgagta cacatgcaag      2700
     agaatattaa atttccgatg agctttttta ataatatatg tagctgtcca atttatttga      2760
     attttttttt atatgtgtat atatccttta taagtaacag caaaaaaaaa aaattttgaa      2820
     aatgtgtaac gaaatttctt aaaattgagc gaaaacgacc agacatagaa taaaacaggt      2880
     ttacactaac ttggaacaaa taataaaaac aaatattttc actgaatgaa acaatttttg      2940
     ttcattagtt ttgatgtgta ataaatttat ctacaaaaaa aaaaccgtac aaaaatagca      3000
     taatttttgc agaagttatt aattaatcgc tgctaaatca gccgtttcgc ccactgtgtg      3060
//
ID   Transib1_NVi repbase;    DNA;    INV; 3506 BP.
XX
AC   .
XX
DT   13-NOV-2007 (Rel. 12.11, Created)
DT   14-NOV-2007 (Rel. 12.11, Last updated, Version 1)
XX
DE   Transib-type element: consensus.
XX
KW   Transib; DNA transposon; Transposable Element; Transib1_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3506
RA   Jurka J.;
RT   "Transib1_NVi: Transib-type element from Nasonia parasitic
RT   wasp.";
RL   Repbase Reports 7(11), 1181-1181 (2007).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1016..2452
FT                 /product="Transib1_NVi_1p"
FT                 /translation="MNTFSIQNGILCDILLKLDNKSRSVNCLIDYIKAQYE
FT                 LSDEESSIVLESSFMVTFKSKLSAVLYKEHIFRKKYVSWIADNFVVNFDNN
FT                 LKRGRPVTDSFEGSSRSTKYRIIQSITSSFSQEEIKKAFYKNLRDSGKKHL
FT                 IKQIEDLLSDPNCSMNNSVSEEIIPFTEDEAIALIKDAKLSKWQYDTIRKQ
FT                 VKGKNVDIFIPYKQLFSAKENCYPISSSLSISEKGGSVDLQQLLNHTSKRL
FT                 LQIPDILSNFKTSEAEYSLVLTSKWGCDGSSDHSQFKQIFSDGTSSDESIF
FT                 MMCMVPLILEVNTSDGATVIWRNPQPGSTRHCRPISFVYAKEISEKTVADV
FT                 NAMKTKIESLLPSIVNTDVNQFKIHHSLKLTMIDGKVCQAITGSPSCATCC
FT                 ICGAKPSQMNDLYKLAERTENEENFEYGLSSLHAKIRFMENILHIAYRLDF
FT                 CKWQATSDQQKTTNNAKKESLEFNTDSDKKLASS"
XX
SQ   Sequence 3506 BP; 1175 A; 596 C; 597 G; 1136 T; 2 other;
     cgcacactgg gccctataga catttgttgt ttcaaaattc tctacagacc atggttttcg        60
     accaatcaca ataaaattga agtttattaa aattctaaaa gacccataag gccagatttt       120
     tgaaaaaatg ttataataat taattaaaaa tctaagttaa acaataaacc cataaacctt       180
     aaggcattaa tggccataag caaatgggcg actactgaag gaagctatat atatttgtaa       240
     gtggttattg gggtcgctga ttataaatct ggcattagtt ttgcaaaatt gatttgttta       300
     aacaatttgt ttaaacaatt tattgcaaaa ttatcttttt attcaaaact actttagttt       360
     agtctagttt tgcactgggt acttaattcc ccgtatatgt gcagcagcgt tcatcaccgc       420
     accagtagta ctgcgcttgg ccgctaggcg gtgacgacac cagttttcgt atccgtcagc       480
     gaagtagcgt cctgaaaggc atataatgat gcactaatcc atgaattttt accgtacttt       540
     ttcgtgttaa aaatttgccg tgttagagat cacgttcgag tggcaggcta acggttaaat       600
     attattataa ataagcattg aaattagact tcaaaactag aataaatatt aggagttttc       660
     agcgattatc gttgcaaaca atttttcttc agccgttttc acggctacta tttgcataga       720
     taattttcac gatcattatc agtcgttctc acgactactt ctccagcgat tatccttgca       780
     aatagttttt tatcagccgt tttcacggct actgtttgca tagataattt ttacggtctt       840
     tttcaaacag acattttcac gactactccg gcgattattg ttgcaaacag tttcttatca       900
     gccgttttca cggctactgt tttcatatat agttttcagg ttaattttcg agcagtcatc       960
     atcacgactg catcaaagtt acctttcatt catcccctct aagtgaaacc taacaatgaa      1020
     tactttttcc attcaaaacg gtatattgtg tgatatactg ttgaaattag acaataaaag      1080
     tagaagtgta aattgcttga ttgattatat taaagcgcaa tatgagctca gcgatgagga      1140
     atcaagcatc gttcttgaga gttcttttat ggtcactttc aagtcaaaac tgtctgctgt      1200
     actttataaa gaacacatat ttaggaaaaa atatgtatct tggatagcag ataactttgt      1260
     tgtgaatttt gataacaacc tgaagcgtgg aagacctgtc actgatagtt ttgaaggcag      1320
     ttcgagatct acgaaataca gaataataca gtctattact agtagctttt ctcaggaaga      1380
     aataaaaaaa gctttttata aaaatttacg agattctggg aaaaagcatt taattaaaca      1440
     aattgaagat cttttaagcg atcccaattg ttctatgaat aattccgttt cagaggaaat      1500
     aattcctttc accgaagatg aagcaatagc tctgattaaa gatgcaaaat tgtcgaagtg      1560
     gcagtatgat actattcgca aacaggtaaa aggaaaaaat gttgatattt tcatacctta      1620
     taaacaactt ttttcagcaa aagaaaattg ttatcctata tcttctagtc tctccatatc      1680
     tgaaaaaggt ggtagcgttg atttacaaca actgttgaat catacatcta aacgtctcct      1740
     acagataccg gatattttat ctaatttcaa aactagtgag gctgaatact ctctagtttt      1800
     gactagtaaa tggggatgtg acggatcatc agatcatagc cagtttaagc aaatattctc      1860
     cgatggaact agctcagatg aaagtatttt catgatgtgt atggtaccac ttatcttaga      1920
     agtcaatact tcagacggtg caacagtaat ttggcgtaac cctcaacctg gttcgactag      1980
     gcattgccgg ccaatcagtt ttgtgtatgc caaggaaatc agtgagaaaa cagtggctga      2040
     tgttaatgct atgaaaacta agatcgagtc actattgcct tcaattgtaa atacagatgt      2100
     aaatcaattc aaaatacacc actcattaaa actaacaatg atagatggaa aagtatgcca      2160
     agcaataaca ggttctcctt cttgtgcaac gtgttgcatt tgcggagcaa aaccttcaca      2220
     aatgaacgat ttgtataaat tggctgaaag aaccgaaaat gaagaaaatt ttgagtatgg      2280
     cctttcatct ttacatgcaa aaatacgatt tatggaaaac atactccaca tagcataccg      2340
     tttggatttt tgtaagtggc aggcaacatc agatcaacaa aaracaacaa acaatgccaa      2400
     gaaagaaagc ttagaattca acaccgattc agacaagaaa ctggcctcat cgtagattat      2460
     ccacaacaag gatcgggtaa ttctaacgat ggtaatactg ctaggagatt tttccgtgac      2520
     cctgcactga cagctgaaat tacaggtgtc aatgaaagtt taattacaag atacagtgta      2580
     atactacaag ctcttgcttc tggatctaaa atagactccg acaaatttga cgattatgca      2640
     aaagaaactg ctaagttata tgtatctttg tacgattggt tctacatgcc tgcatctgtg      2700
     cataaaattc tcctccatgg tgcgaacatt ataaatcact ttctcattcc aatcggcatt      2760
     ttatccgaag aagctcaaga atcacggaat aaagatttga aatactatcg tcaatttaat      2820
     actcgaaaat gtggtagaat ctacacgaat atagatctat tgcataaatt attaatatct      2880
     tctgatcctt atatatctag tttaaggcac aaggcaaaaa atataaagct tgatgttgat      2940
     gatgctgtta agaacttatt aattttaact tgaaatgaag tgatacaatt ttaaaattgc      3000
     tcagcttaag gtatttgggt ttgaggttaa aggtttacgg ttaacacnaa ttttctataa      3060
     ttgcaaattg cccaccttgg agtagtgaat ttccttgttt atgctttgaa catgattggt      3120
     tatagtaatt atgcccgtaa aattcaaaac taaagtagtt ttgaataaaa agataatttt      3180
     gcaataaatt gtttaaacaa attgtttaaa caaatcaatt ttgcaaaact aatgccagat      3240
     tcataatcag cgaccccaat aaccacttac aaatatatat agcttccttc agtagtcgcc      3300
     catttgctta tggccattaa tgccttaagg tttatgggtt tattgtttaa cttagatttt      3360
     taattaatta ttataacatt ttttcaaaaa tctggcctta tgggtctttt agaattttaa      3420
     taaacttcaa ttttattgtg attggtcgaa aaccatggtc tgtagagaat tttgaaacaa      3480
     caaatgtcta tagggcccag tgtgcg                                           3506
//
ID   TRANSIB2    repbase;    DNA;    INV; 2844 BP.
XX
AC   .
XX
DT   14-AUG-2000 (Rel. 5.07, Created)
DT   24-APR-2001 (Rel. 6.03, Last updated, Version 2)
XX
DE   TRANSIB2 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; TRANSIB family;
KW   TRANSIB2; TRANSIB2p transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2820
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB2.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
RN   [2]
RP   1-2844
RA   Kapitonov V.V.;
RT   "TRANSIB2.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
DR   [2] (Consensus)
XX
CC   TRANSIB2 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB2 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~40 copies of TRANSIB2 which are ~95% identical to the
CC   consensus sequence. Several sequences are 100% identical to each
CC   other and form a minor TRANSIB subfamily that was active most
CC   recently in the D.melanogaster genome.
CC   TRANSIB2 encodes the 690-aa TRANSIB2p transposase
CC   (positions 543-2612).
CC   TRANSIB2p is a most accurate reconstruction of a TRANSIB-like
CC   transposase, compared with transposases from other TRANSIBs,
CC   since
CC   this family is most ambiguous and young.
CC   This protein is 42-43% identical to TRANSIB1p and TRANSIB3p.
CC   There is only partial ~60% nucleotide identity between TRANSIB2
CC   and TRANSIB1 or TRANSIB3.
XX
FH   Key           Location/Qualifiers
FT   CDS           543..2612
FT                 /product="TRANSIB2p"
FT                 /translation="GKFEFRHSDLLDIWRRNNRQISYVSDYVYSAINNNNL
FT                 ESKKTEEIDKKIVHFELFIKRKLPECNRQLDRFISKHTKWMASKITILVSD
FT                 FENSKTPQQMGRRNLSYQNAGERLKRKLASNLASESDHDTSLLIHAATVSA
FT                 RKECKRDVAFVLKETLKTPEFPSESRMQIQWQKPTPLSPDEALAYLLENTL
FT                 TKQQYISTRLLNKSHNSDIYPPYNEVIEAKLQCRPEGIEVMENTAQVLLQN
FT                 LLDHTAQRLIKLQSDVFKQFPDIFKIKLICSYGFDGTTGHSAYKQKFETEA
FT                 LGTPISDQSLFVTSVIPIQIIDSFNRHIWINRAPQSIRFCRPLKIELIKET
FT                 AVHIMMEKNQLDNQINNLTPFTYKCDETRDIEVTYEMHMTLIDGKVLNVLT
FT                 DTKSTQCCPICGVSPTQMLKITNFSSETFAPKVKALQFGVSPLHAWIRFFE
FT                 FVLNVSYRAEIKKWHIKGEDKVKISIRKKYIQEEMWREMGLRVSMPKQNGS
FT                 GNSNDGNTARRAFASTKFSSITSFNENLLEKFHIILIAISSNYFINSDKFR
FT                 SFCDITFQLYIRTYQWYGYQINNSALFPLGCLGENASEARNKLYKRDRLSH
FT                 ARKNSRINTMSDIFHRAIDSSDPLLSTICLKERERKNRKKPLPKAVISLLE
FT                 IQSSFKPDPSDKILDSHSDSDSSSDSEIYNVELEEEEGDYF"
XX
SQ   Sequence 2844 BP; 1025 A; 487 C; 507 G; 825 T; 0 other;
     cactatggtc cagaattcgt tttttttggc ataaagtcta aatttttatg tcaatatatc        60
     gtcctttagc aattattttc taatagaaaa ttgatcatat aaataaaaac caaaaacaaa       120
     attgaccgaa agcttcacta aatcgtttta tgagctttta aaggtgaagt gttaaacagc       180
     tgattgagag aatgcaattc ccgccaaatt atttgcttac ttttgcacgt ggtacgatcg       240
     ttaatacgca tccataaatt atagtaaaat atggaaaata aatgccaagg tatgttgttt       300
     ttaacgtatg tagttaatat atgtgtagtt gtactgtttt tgtgttgtgt aacatccaat       360
     ttatgtgtat tttaacagaa aattctaacg tgtcccctgt gtttcgtgga gtataactaa       420
     ttttctgaca atttctgaca aaagttaaaa acgtcagttt gtacctttaa ctattgtctt       480
     tgacggtaaa gtaatatctt ttgcccattt ttgctcgttt tcttaaaatt tgattttata       540
     taggcaagtt cgagttcaga catagcgacc tcctggacat ttggaggcgt aacaatcggc       600
     aaataagtta tgtttcagat tacgtttatt ccgcaatcaa caacaataat ctggaatcga       660
     aaaagacaga agagattgac aaaaaaatag tacattttga attattcatt aaaagaaaac       720
     tgcccgagtg taacagacaa ctagaccgat ttatttccaa acataccaag tggatggcgt       780
     ctaagataac aattcttgtt agtgattttg aaaactccaa gacaccacag caaatgggac       840
     gccgaaactt atcttaccaa aatgcaggag aaagattaaa aaggaaactg gcatccaatc       900
     tggcaagtga aagtgatcac gacacaagtc ttttgattca tgcagcaact gtttctgcta       960
     gaaaagaatg caagagggac gttgcctttg ttcttaaaga aactttaaaa acaccagaat      1020
     ttccaagcga atcgaggatg caaattcaat ggcaaaaacc aactcctctt tcaccagatg      1080
     aagctctagc ttatctcctg gaaaacacgc tgacaaaaca gcaatatata agcaccaggc      1140
     ttttaaataa aagccataac agcgacatat atccgcccta taatgaagtg atcgaagcaa      1200
     aattacagtg ccgaccagag ggtatagaag taatggaaaa cactgctcaa gtgctattac      1260
     aaaatctctt ggatcataca gcgcaaagat taattaagtt gcaatctgat gttttcaagc      1320
     aatttccaga tatctttaaa atcaaattaa tttgcagcta cggatttgat gggacaactg      1380
     gtcatagtgc ttacaagcag aaatttgaaa ctgaagcact tggcacacca atttctgatc      1440
     aatctttatt tgtaacttct gtcataccca tacaaattat agattcgttt aatcggcata      1500
     tctggataaa cagagcaccg cagtccattc gattttgcag gcctctaaaa attgagttga      1560
     taaaggaaac tgctgtccac ataatgatgg aaaaaaatca gttagataat caaattaata      1620
     atcttacgcc attcacttat aaatgtgatg aaactcgtga catagaagtt acctatgaaa      1680
     tgcacatgac acttatagat ggaaaagtcc taaacgtatt aacagacact aaatctactc      1740
     aatgttgtcc gatctgtgga gtcagcccaa cacaaatgtt gaaaattaca aattttagtt      1800
     cagaaacctt tgcaccaaaa gtaaaagctt tacaattcgg ggtaagtcca ctacatgctt      1860
     ggatccggtt ttttgaattt gttttaaacg tatcatacag agccgagata aaaaagtggc      1920
     atataaaagg agaggacaag gttaaaataa gtattcgaaa aaaatatatc caggaggaaa      1980
     tgtggagaga aatgggcctt cgagtaagca tgccgaagca gaatggcagc ggcaatagca      2040
     atgatggtaa tacggcaaga agagctttcg caagtaccaa attctcgtcg ataaccagct      2100
     tcaacgaaaa tcttttggaa aagtttcaca ttattttaat agcaatatcg tccaactatt      2160
     ttataaattc cgacaaattt cgttcttttt gcgatataac ttttcaatta tatatccgaa      2220
     catatcaatg gtatggatat caaatcaata attcggcgtt gtttccactt ggatgcctag      2280
     gcgaaaatgc gagtgaagcc cggaataaac tttacaaaag ggaccgacta tcacatgcaa      2340
     ggaaaaatag tcggatcaat acgatgagtg atattttcca cagagcgatt gattcctcgg      2400
     acccactatt atcaacaata tgtttaaaag aaagagagag aaaaaatagg aaaaaaccac      2460
     ttccgaaggc agtaataagt cttttggaaa tacagtctag ttttaaacct gatccatcag      2520
     acaaaatatt ggattcacat tctgattctg attcgagttc agattcggaa atttataatg      2580
     tagaactaga agaagaagag ggcgattatt tttaaaacaa caatatacac acttttattt      2640
     aaaaaaaaaa aaaaacaatg aaatttcgtt gactcctgag tcataccagt agttaatatg      2700
     ggaggcaaga gagggcgtgg tcgcacagac ttcaaatttt gtgtgcaaac tatttgtggt      2760
     ttaacaacaa aatgtacaaa gtttcaagtc tgtagctcaa tttttagact ttatgccaaa      2820
     aaaatcgaat tctggaccac agtg                                             2844
//
ID   Transib2_AA repbase;    DNA;    INV; 796 BP.
XX
AC   CC150426;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   27-JUL-2005 (Rel. 10.05, Last updated, Version 2)
XX
DE   Transib2_AA is a DNA transposon, a partial fossilized copy.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib2_AAp transposase; Transib2_AA.
XX
NM   Transib2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-796
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   GenBank; CC150426; Positions     796       1.
XX
CC   Transib2_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib2_AA encodes remnants of the Transib2_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
XX
FH   Key           Location/Qualifiers
FT   CDS           240..791
FT                 /product="Transib2_AAp"
FT                 /note="transposase"
FT                 /translation="RLPFKTWQVRGDVNKKTFEERKKRILNEFKVQLGLIV
FT                 DKPKPGYGTTNDGNTARTFFAHPKVSAAITGVDETLIVKFATILRVVACGR
FT                 EIDIPKYRELLLETREQYFSLYSWYYMPLTVHKLLIHSANIISMFELPVGE
FT                 LSEEALEATHKIIRRARLNHTRKSSRINTNEDLMRCLLLNSDAFL"
XX
SQ   Sequence 796 BP; 249 A; 152 C; 159 G; 236 T; 0 other;
     tacgttgtct cacgaaaaag catcagccaa atgttacatt tgtggtgcaa ccccgaaggg        60
     catgaataat cccgaagttg atcagaaacc tgaaaataca gataatatgc gatttggaat       120
     gtcggtttta tactgctgga ttaacatgtt cgattgcttt cttcatatcg cttacaggta       180
     tttattcatt tatttctttc cagtgtaaac caattgatca tttttttctg tttttttaaa       240
     ggctgccttt caaaacttgg caggttcgtg gagatgttaa taagaaaacc ttcgaggaac       300
     gtaagaaaag aatcctgaac gagtttaaag ttcagctggg attgatagtt gataagccta       360
     aaccaggcta cggcacaacc aatgacggca atacagcgcg tacttttttt gctcacccta       420
     aagttagtgc tgctattacg ggcgttgacg aaactcttat agtaaaattt gcaactatac       480
     taagggtagt tgcctgcgga agagagatcg acattccaaa atatcgggaa ttgttactgg       540
     aaacaaggga acaatatttt tctctttaca gttggtacta tatgccatta accgtgcata       600
     aactgctaat acatagcgcc aacattattt caatgtttga gttgcccgtc ggcgagctgt       660
     cagaagaagc cctagaagct actcataaaa tcataagaag agcccggttg aatcatacca       720
     gaaaatcgtc cagaatcaat actaacgagg acttaatgag atgcctgctc ctaaattcag       780
     atgcttttct ataagt                                                       796
//
ID   TRANSIB2_AG repbase;    DNA;    INV; 2542 BP.
XX
AC   .
XX
DT   29-JAN-2002 (Rel. 7.00, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   TRANSIB2_AG is a TRANSIB-like DNA transposon - a partial
DE   consensus.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   TRANSIB superfamily; TRANSIB2_AG; transposase.
XX
NM   TRANSIB2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2542
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB2_AG.";
RL   Direct Submission to Repbase Update (27-DEC-2002).
XX
DR   [1] (Consensus)
XX
CC   TRANSIB2_AG is a young Transib-like DNA transposon.
CC   Its copies are only ~1% divergent from the consensus sequence.
CC   The consensus is incomplete at its termini and encodes a 662-aa
CC   TRANSIB2_AGp transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(315..1889,1893..2300)
FT                 /product="TRANSIB2_AGp"
FT                 /note="transposase"
FT                 /translation="TFYYKDDFLQIQRYRKTIRIQKPTDYNVNKVLQYISS
FT                 VININEIEKQRLVGNLKYLYYRFRTLFAKSSRNMLRFENKNRPWLALELKV
FT                 SNVNLSDSSRGRPKKPFAELSIRNKRRFVANEQKSSVDIEQELYRVRLLAY
FT                 REKNCNLMAVIDKLLSHPENVFESIKNCGKSVSLEESLALFIDNRWSKAQY
FT                 INMYQKTKNMFPSYTALSNFKKTCSPCEDFINVSETKASVGLQAVLNHTAS
FT                 RIINMKKDKIIQNFDSENVSFKNINLLCSWGIDGSTGHSNYQQKFDGVNES
FT                 MVTDSELLVTAFSPIRLAQSENDGNIFWLNLLPQSTRFCRPLAIEYVKESK
FT                 EKVLESINFIKTEISNLIPFKIDLSETKYVIITYSFYMSMIDGKVLAYVTN
FT                 TSSMQCCCICGAAPNEMNSKDNLENGFLAREESLHYGISPLHCWMRFFECL
FT                 LHISYRLEFKQWKVTKNFKDIFTQRKKSIQQKIYEEFGLRVDEPRPMGANS
FT                 TTGNVCRRAFSDVTKLSRILEIDEQLISRKNILIAINCSQPIKPHALSLYC
FT                 KDTYSIYLNNYSWFKMPSTVHRVLAHIGEVILRAPAPIGALGEEAAEGRHK
FT                 LYRQDREIHARKNSRINNLKDIFMQALYSSDPYISSISLDKRLQKTSKNQY
FT                 PDEVKQFFPEFL"
XX
SQ   Sequence 2542 BP; 926 A; 397 C; 463 G; 756 T; 0 other;
     gaatgtcaac aaatgataat tagtaaatat tttaattatg aatgaacatg aacttcatta        60
     aatttatgaa ttatatacgt ttaaaatggt tatctaaaca ccaaaacaaa tatttgctgc       120
     aaatttattg attcattaac tgccgattta aactccataa tgattggaat cgggactgac       180
     attatgacag atcaaatgtc agactggtgt atcccacgag accccccccc cctccgaaga       240
     ggggaacaga aaccgccatg tttacagttt ggtatgtgca agcttatcta gtagtttgtt       300
     ggtgcataat ataaactttt tattataaag atgacttcct tcaaatacaa cgatatcgta       360
     aaacaattcg aatacaaaaa cctactgatt ataacgtcaa taaagtgcta cagtatatat       420
     caagtgtgat taacattaat gaaattgaaa aacaacgact agtgggcaat ttaaaatatc       480
     tttactatcg gtttcgtact ctttttgcca aaagctctag aaatatgtta cgttttgaga       540
     ataagaatag gccgtggctc gctttagaac ttaaggtatc caatgtaaat ttaagtgata       600
     gttctcgagg tagaccaaaa aaaccattcg ctgaactttc catacgaaat aagcgacgtt       660
     ttgttgctaa tgagcaaaaa agcagtgtag atatagaaca agagctgtat cgtgtccgtc       720
     ttttagcata tagggaaaag aattgcaatt tgatggccgt tattgataag ttactcagtc       780
     atccagaaaa tgtttttgag agcattaaga attgtggcaa aagtgtatct ctagaagaaa       840
     gtttagcgtt attcatagat aatagatggt caaaggcaca atacataaat atgtaccaaa       900
     aaacaaaaaa tatgttccct tcttacacgg ctttaagcaa ttttaagaaa acttgttcac       960
     catgtgaaga ctttattaat gttagtgaaa ccaaagccag cgtaggactg caagcagttt      1020
     tgaaccatac ggcatctaga attatcaaca tgaaaaaaga taaaattatt caaaattttg      1080
     atagtgaaaa cgtaagcttc aaaaacataa atttattatg ttcttgggga atcgacgggt      1140
     caactggtca cagtaattat cagcagaaat ttgacggggt gaacgaaagc atggtaacgg      1200
     acagtgaact gctagtaact gctttcagtc caataagact agcacaaagt gaaaatgatg      1260
     gaaatatttt ttggttaaat ttgctgccac agagcactag attttgcagg ccgttagcga      1320
     tagagtatgt aaaggaatct aaagaaaaag tattagaaag tattaacttc ataaaaaccg      1380
     aaatttcgaa tttgattcca ttcaaaattg atttgagtga aacaaaatat gtaattatta      1440
     catattcttt ttatatgagc atgatagatg gaaaagtatt ggcctatgta acaaatacaa      1500
     gttcgatgca atgttgttgt atttgtggag ctgctcctaa cgagatgaat agtaaggata      1560
     acttagaaaa cggattttta gctagggaag aatcgcttca ttacggaata tcacctttgc      1620
     attgttggat gcgctttttt gaatgcctat tacacatttc gtacagactt gaatttaagc      1680
     aatggaaagt aacaaaaaat ttcaaagata tatttactca gcgtaagaaa agcatccaac      1740
     agaagatata tgaagagttt ggtttgcgag tggatgaacc aaggcctatg ggtgctaaca      1800
     gcacaactgg aaatgtatgc cgtcgtgcat tttctgacgt gactaaactt agtcgtatat      1860
     tagaaattga tgaacaactt atcagtagat aaaaaaatat tttgattgcc atcaattgtt      1920
     cgcagccaat aaaaccgcac gccttaagtt tatactgcaa agacacatat tcaatttatt      1980
     taaacaatta cagttggttt aaaatgcctt caacagtgca ccgcgtactt gcacatattg      2040
     gagaagttat attacgagcc ccagcaccaa taggcgctct aggagaagaa gctgctgagg      2100
     gtcgacataa actgtataga caagatcgtg aaattcacgc gagaaaaaac tcaagaatca      2160
     ataatctaaa agatattttt atgcaagccc tttattcttc agatccctac attagttcca      2220
     tttccttaga taaacgcttg caaaaaacat caaaaaatca atatccagat gaagtaaaac      2280
     agttttttcc agagttttta taacactagt tggtctagtt ggcacatatt gagtatgcaa      2340
     atgatgtttt agagtgatat caatgaagga gaagaagaga atcaagaatt tcaaaatact      2400
     agcactacta aatactactg cacgacaatg ttgaagaatt atgaaagctt ttaaactatg      2460
     cagaactatt actattaatt taaagaccct gaagtacttg ttgaattgtt gaattgagaa      2520
     agtctaccga tgttgtgcat tg                                               2542
//
ID   Transib2_DP repbase;    DNA;    INV; 3032 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Transib2_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; transposase;
KW   Transib2_DP.
XX
NM   Transib2_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3032
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib2_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 704-aa Transib2_DPp transposase
CC   (pos. 270-288, 543-2638). Transib2_DP elements are characterized
CC   by CAWTG target site duplications and 38-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,543..2635)
FT                 /product="Transib2_DPp"
FT                 /translation="MENEDKGKFEFLHSDLIDIWRNNNRQKKSVSHWIYSK
FT                 INNNHLENEKKREIDKKISNFESFIKRNLLKCNKMMERFMTTHAKWMASKI
FT                 TIIVDENCKTPKKMGRPTLHYTNAGTRLKRKLASDLANDNNNNTNLLMHAA
FT                 AVSAKKERKTDVAFVVTKTIRTPEYPTESKKHLQLQKPIPLSPDEALAYLL
FT                 ENSLNKQQYTNTRLLNKRHNCDIYPSYNKVMEAKLQCRPECIEVMETTARV
FT                 PLQNLLDHTAHRIIKLQSDVFKQFPDASENKLICSYGFDGSTGHSIYKQKF
FT                 LTEIPGSQLSDHSLFVTSVIPIQITDTYHRNIWTNRTPQSIRFCRPLKIDL
FT                 VKETTAHIIIEKKDLDFQINTLKPFVYKLVENVDIVVTYEMHMTLIDGKVL
FT                 NVLTGTKSTQCCPICGVTPTKVLEITDLSSETFTPKLGALKFGVSPLHAWI
FT                 RFLEFVLNISYRIEIQKWHIKGDNKIKTSIRTKYIQEKIWEDMGLRISMPK
FT                 QNGNGNSNDGNTARRAFANTKLLSSITNFSVALLNNFHIILIAISCNYYIN
FT                 SEKFRSFCESTFCLYMQTYPWYPMSPTIHKVLVHGFQINNSTLVPLGCLGE
FT                 NASEARNKMYKKDRLSHARKNSRVNTMTDIFYRAIDSSDPLLSSVCLKERE
FT                 RKNKKKPLSKEVLSLLELPSTESKDSCEYENDSQSDSDSDYNIYDIELEEE
FT                 DEVI"
XX
SQ   Sequence 3032 BP; 1127 A; 486 C; 532 G; 887 T; 0 other;
     cactatggtc cagaattcgt tttttttggc ataaagtcga aatttttatg tgaatggatt        60
     acgttttttc ttgcaaattc tcaaagtaaa ttcatcatac atattaaaaa tgaaaaaaaa       120
     aaaattattt agcttccctg aagattttgg cgagcttttg aaagtgaaca atcgatcagg       180
     tgattgtggg aaaaaaattg gcgccaaatt acttgtttac atttttacgt ggcgaccgag       240
     taaatttgct caaataaatt cggctaaaaa tggaaaatga agataaaggt atgtagtatc       300
     taatgtattt agttatttta tgtgtagtcc caagatttaa gtgttgtgca atgtccaatt       360
     tatgtgtatt tttgtagaaa atttaactgc gtcccctgtg tttcgtagaa tataacaaat       420
     gaactgagtt ctgctgagaa aaactaacta tgtgagtttg tacctacaaa tgttgtaatt       480
     gactggaaag taacaacttt ggcccgtttt ggcccctttt ctttaaattt gttaatattc       540
     aggaaagttc gagtttttgc atagcgatct catcgatatt tggcgcaaca acaatcgaca       600
     aaaaaaatct gtctcacatt ggatttacag taaaatcaat aacaaccatt tggaaaatga       660
     aaaaaaaaga gaaatagata aaaaaatcag taattttgaa tccttcatta aaagaaacct       720
     tctgaagtgc aacaaaatga tggaacggtt tatgaccacc catgctaaat ggatggcttc       780
     taaaataaca attattgttg atgaaaattg taagacacca aagaaaatgg gacgtccaac       840
     attacattat acaaatgcag ggacaagatt aaaaaggaaa ctggcgtctg atcttgcaaa       900
     tgataataat aataacacga atcttcttat gcatgctgcg gcagtttctg ctaagaaaga       960
     acgcaagacc gacgtggctt ttgtcgtaac aaaaacaatt agaacacctg aatacccgac      1020
     tgaatcgaaa aagcatcttc aattgcaaaa gcccattcca ctttcaccag atgaagcttt      1080
     agcttacctc ctggaaaatt cactcaacaa acagcagtat acaaacacta ggcttttaaa      1140
     taaaaggcat aactgcgaca tttatcctag ctataataaa gtaatggaag ctaaattaca      1200
     gtgccgacca gagtgcatag aagtaatgga aactactgct cgagtgccat tacaaaatct      1260
     tttggatcat acagcacatc gaataattaa attgcagtcc gatgttttca agcagttccc      1320
     ggatgcatct gaaaacaaat taatctgcag ctacggattt gatggctcaa cgggtcatag      1380
     tatatacaag cagaagtttt taactgaaat acctggcagt cagctttccg atcattcttt      1440
     atttgtaact tctgttatac ccatacaaat tacagacacc tatcatcgga acatctggac      1500
     aaatagaaca ccgcagtcta ttagattttg cagaccgcta aaaattgatc tagtaaaaga      1560
     aactactgcg cacataatta tagaaaaaaa agatttagat tttcaaatta acactcttaa      1620
     accctttgtt tataaattag ttgagaatgt tgacatagta gttacctatg aaatgcatat      1680
     gacacttata gatggaaaag tgctgaacgt attaactgga actaaatcta ctcaatgttg      1740
     tccaatatgt ggggtcaccc cgacaaaagt attggaaatt acagatctta gttcagaaac      1800
     ctttacccca aagcttggag ctttgaaatt tggagtaagt ccattacatg cttggatccg      1860
     gtttttagaa tttgtcttga acatatcata cagaatagag atacaaaaat ggcatataaa      1920
     aggtgataat aagataaaaa cgagcattcg gacaaaatat attcaggaaa agatttggga      1980
     agatatgggt ctacgtataa gcatgccaaa gcagaatggc aacggaaata gcaatgatgg      2040
     gaatacggca agaagagctt ttgcgaacac taagctacta tcatccataa ccaactttag      2100
     cgtagccctt ttaaataatt ttcacataat cttaatcgca atttcgtgta actattatat      2160
     aaattcggaa aaatttcgtt ctttttgtga gagtactttt tgcttatata tgcaaacata      2220
     tccgtggtac ccaatgtccc ctacgattca taaagtatta gtccacggtt ttcaaataaa      2280
     caattcgacg ttggttccac ttggatgttt aggagaaaat gcttcagagg cacggaataa      2340
     aatgtacaaa aaagacagat tatcacatgc aagaaaaaat agtcgggtaa atactatgac      2400
     tgacattttt tatagagcga tagattcctc ggatccatta ctatcgagtg tctgtttaaa      2460
     ggagagggaa aggaaaaaca agaaaaagcc tctttccaaa gaagtattaa gccttctgga      2520
     gttgccgtct accgaaagca aagattcatg tgaatacgaa aatgactcgc aatctgattc      2580
     tgattctgat tataatatat acgacataga actagaagaa gaagatgagg tcatttaaga      2640
     aaaaaattag tgtgtaataa atttccatag tttatatata aatattgata atttgaaata      2700
     agatattata tatgtataat gatttaacaa caaaatgtaa taaatttgaa gtatgtaatt      2760
     taaacttccg actttatgca aaaaaaaaaa acaagaacaa gtacaagtat acaagtatat      2820
     gtacaaaatt taaaagctct agctttaatt tcgagctctg tgttaaacaa atctgaggtg      2880
     ctctggggaa gggggtcgat ggcgtggtcg aatctaaaac aaaaaaaaaa ccgaaatttt      2940
     ataaaaatac tcaaaataat tgtgcaaagt ttcaaggctc tagctttaaa actagacttt      3000
     atgccaaaaa aaacgacttc tggaccatag tg                                    3032
//
ID   TRANSIB3    repbase;    DNA;    INV; 2883 BP.
XX
AC   .
XX
DT   01-AUG-2000 (Rel. 5.07, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 3)
XX
DE   TRANSIB3 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; transposase;
KW   TRANSIB family; TRANSIB3; TRANSIB1.
XX
NM   TRANSIB3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1944
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB3.";
RL   Direct Submission to Repbase Update (31-JUL-2000).
XX
RN   [2]
RP   1-2883
RA   Kapitonov V.V.;
RT   "TRANSIB3.";
RL   Direct Submission to Repbase Update (31-MAR-2001).
XX
DR   [2] (Consensus)
XX
CC   TRANSIB3 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CANTG target
CC   sites upon its integration into the genome.
CC   TRANSIB3 has 40-bp terminal inverted repeats.
CC   There are ~20 copies of TRANSIB3 which are ~94% identical to the
CC   consensus sequence. Putatively, TRANSIB3 lost its activity
CC   several
CC   million years ago.
CC   TRANSIB3 encodes the 688-aa TRANSIB3p transposase at positions
CC   543-2610. It includes a few false stop-codons and frame-
CC   shifts, which are irreversible because of the low number of
CC   TRANSIB3
CC   copies present in the genome.
CC   TRANSIB3p (position 543-2610):
CC   DKFEISRSVLLDEWIKGDRNDKALVDWVVGEFKLNDITIDEKAKIAKQIRSFHLYIMKNLAKCNRTIEAL
CC   KKKHSSWLSSTMMVVVDQNNNQVASDCLMGRPRLSYSDAGSRLKRKIATDLANIEENNTSLLVHAASISA
CC   KKEKMGDTAFVLKQTISTSTASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAKYNDMRALNKTQFSNI
CC   YPSYNKVREAKLACRPAGVHVTETFAQVSFQNLLNHTASRIILMQEEVFRWHENITGVKLMASYGFDGTT
CC   RQIMYKQRFLEDESHFKDSIFVNSHIPIKLTDDFETPLWINRSTQSVRFCRPLKIEFAKETKELILEEKS
CC   NLESQIKNNVTDFTYNFSIDRKIVTFSLHLTLIDGELNIIAGKKSCQVCPICGDSPMDFIKTTEISNIKA
CC   KIENRNYFISPLHAWIRFFEFVLKISYKLNLEKGQKRDKEERDMITSRKQELQQLFFTQMGLHVDEPKRN
CC   RSGNTNDGNTAKRAFKRTRQLSSIQGLKYDILHRFYIILVAMSCEFRIYISKLKQCIWITINGIRCQQLF
CC   AKFXFTVRRXXHRRFYLSAAGENASEARNKFYKRDRRSYSRQISRVNNLTDVFHRSMDSSDPLLSSLNIN
CC   KRSSQNKKIALPKEVINLLDAPNVEHINNEHFLGSDDSDSDSDHDDPFSMHLDVENFD.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(711..1805,1690..2235,2260..2610)
FT                 /product="TRANSIB3_1p"
FT                 /translation="MKNLAKCNRTIEALKKKHSSWLSSTMMVVVDQNNNQV
FT                 ASDCLMGRPRLSYSDAGSRLKRKIATDLANIEENNTSLLVHAASISAKKEK
FT                 MGDTAFVLKQTISTSTASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAK
FT                 YNDMRALNKTQFSNIYPSYNKVREAKLACRPAGVHVTETFAQVSFQNLLNH
FT                 TASRIILMQEEVFRWHENITGVKLMASYGFDGTTRQIMYKQRFLEDESHFK
FT                 DSIFVNSHIPIKLTDDFETPLWINRSTQSVRFCRPLKIEFAKETKELILEE
FT                 KSNLESQIKNNVTDFTYNFSIDRKIVTFSLHLTLIDGEGFEYNSWKEILPG
FT                 VSYLWRQSNGFYKNHRNIKYQGLTERGLNIIAGKKSCQVCPICGDSPMDFI
FT                 KTTEISNIKAKIENRNYFISPLHAWIRFFEFVLKISYKLNLEKGQKRDKEE
FT                 RDMITSRKQELQQLFFTQMGLHVDEPKRNRSGNTNDGNTAKRAFKRTRQLS
FT                 SIQGLKYDILHRFYIILVAMSCEFRIYISKLKQCIWITINGIRCQQLFAKF
FT                 HRRFYLSAAGENASEARNKFYKRDRRSYSRQISRVNNLTDVFHRSMDSSDP
FT                 LLSSLNINKRSSQNKKIALPKEVINLLDAPNVEHINNEHFLGSDDSDSDSD
FT                 HDDPFSMHLDVENFD"
XX
SQ   Sequence 2883 BP; 1014 A; 488 C; 511 G; 870 T; 0 other;
     cacactgggc cagattccct tttttttggc ataaagtcaa aaaattttgt aaattgtatt        60
     ttgaatttaa ctatatatta tgaaagagca tacattaggg acaccaaaac gatatttaaa       120
     aacatttaag ttgcaacact gcatttttta tgcgatatca aattcatatg tttgatcagc       180
     tgtttgttca agcaaaattg gcgcgaaact tttactcaac tttgtgattc tgttaaaaat       240
     acaccacgtg tccaaatatt ttcaaataaa atggaatata aaggtcaagg tatgcttaat       300
     atagatataa cttactgatt tagaattatg tgttccatgt tgtaattgtt gttgtctttg       360
     tttacgtctt agtttaggca aaatctaacc aaagtgttcg tctattgtgg agtgagaaat       420
     gatttgtgcc aacttgtgcc aaaaactaat aactgatgtg tttactcaaa actgtaatta       480
     aattgatgtt agtaacgcct tttgcctaaa tttgcctatg ctctttatat tttgcctttt       540
     aagacaagtt tgagattagc cgatcggttc tgctggatga atggatcaaa ggagatcgaa       600
     atgacaaagc cttagttgac tgggttgttg gcgaatttaa attaaatgat attactattg       660
     acgagaaagc taaaatcgct aagcaaatca gaagctttca cctatatata atgaaaaatc       720
     tggctaaatg taaccgtaca attgaagcat taaaaaaaaa acattccagt tggctttcat       780
     ccacgatgat ggttgtcgtg gaccaaaaca acaaccaagt cgcttcagac tgtctaatgg       840
     gacgacctcg actctcttac agtgatgcag gatcacggct caaaagaaaa atagcaacgg       900
     atctggctaa tattgaagaa aataatacaa gtcttcttgt ccatgcagca tcaatttcag       960
     ccaaaaagga aaaaatgggc gatactgctt ttgtattaaa gcaaaccatt tcaacttcaa      1020
     ctgcatccac tgaaattaga aagaaattga tattctcaga gccagtaccg ctcacaccaa      1080
     ttcaggctct tgcatttttg attgacagct ctctatccaa agcaaaatac aacgacatga      1140
     gagctttgaa caaaacacaa tttagcaaca tttatccatc gtataataaa gtcagagaag      1200
     ctaaattagc gtgtagacct gcgggagttc atgtgacaga gacctttgcc caagtatctt      1260
     tccaaaattt gctgaatcat acggccagtc gaattattct tatgcaagag gaggttttta      1320
     ggtggcatga aaacataaca ggtgtcaagc tgatggcaag ctatggattt gacggtacta      1380
     ccaggcagat tatgtacaag cagagattcc tagaagatga atcccatttc aaagactcta      1440
     ttttcgttaa tagccacatt ccaataaaat taacagatga ttttgagaca cctttatgga      1500
     taaatagaag cacccaatca gtaagatttt gcagacccct aaagattgaa ttcgctaaag      1560
     aaaccaagga acttattttg gaggaaaagt cgaatttgga gtcacaaata aaaaataacg      1620
     tcacagactt tacttacaat ttttcaatcg acagaaaaat agttacattt tcccttcatc      1680
     tcacattaat tgacggagag gggtttgaat ataatagctg gaaagaaatc ttgccaggtg      1740
     tgtcctatct gtggagacag tccaatggat tttataaaaa ccaccgaaat atcaaatatc      1800
     aaggctaaaa ttgaaaatcg aaattatttc atcagtcctc tgcacgcatg gatcagattt      1860
     ttcgagtttg tactcaaaat ctcatacaaa cttaatttgg aaaaggggca aaagagggat      1920
     aaagaagaaa gagacatgat aacatcccgt aaacaagagt tacaacaatt attttttact      1980
     cagatgggat tacatgtcga tgagccaaaa cgaaaccgaa gtggaaatac gaatgacgga      2040
     aacaccgcaa aaagagcatt taaaaggaca aggcaacttt catcaataca aggattaaag      2100
     tatgatattt tgcacaggtt ttatattatt ttggttgcta tgtcttgtga atttcgtata      2160
     tatatttcta aattaaaaca atgtatatgg atcactataa atggtatccg atgtcagcaa      2220
     cttttcgcaa agttttgatt cacggtccgc agataatagc atcgtcgctt ttatctatcg      2280
     gctgctggag agaacgcatc tgaagcacgt aataaattct acaagcgtga tagacggtca      2340
     tattcgagac aaatttctcg tgttaacaat ttaacggacg tatttcaccg atccatggat      2400
     tcatcggatc ctttactttc aagcctaaat ataaacaaaa gatcgtctca aaataaaaaa      2460
     atcgctttgc cgaaagaagt catcaatctt ttagatgcac caaatgtaga acatattaat      2520
     aatgaacatt ttttgggaag cgatgatagc gactcggatt cggatcacga tgatccattt      2580
     tctatgcatt tggacgtaga aaattttgat taatataata gtataattat atgtatatta      2640
     aatagataca taagaaaaat tcagcttaaa tttattatat taattaataa aaagaaataa      2700
     tcatgccaaa tctactcctt aactttatat cctaatatgg gcggtatggg tgggcgtggt      2760
     ccgatttact tgaaatttca cgtacgtatt ttaaatgtca aatgcaccaa ttctacaaaa      2820
     atgcagctct ctagctttat tatttgactt tatgccaaaa aaaagggaat ctggcccagt      2880
     gtg                                                                    2883
//
ID   Transib3_AA repbase;    DNA;    INV; 933 BP.
XX
AC   CC120136;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib3_AA is a DNA transposon, a partial fossilized copy.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib3_AAp transposase; Transib3_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-933
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   GenBank; CC120136; Positions     933       1.
XX
CC   Transib3_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib3_AA encodes remnants of the Transib3_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
CC   Conceptually translated Transib3_AAp transposase:
CC   NFHVAMKSTPVKFKSYCFETAELYVSLYPWYYMPTALHKLLIHGHKIVERSVLPVGRMSEEAQERSNKTI
CC   KSNRNNFSRKNSSENTNRDIVNRMLIISDPLINTDLKPPRNHHKDLPEDVLQLLKNENDVDNELDDSDDA
CC   SFGTQSDCED.
XX
SQ   Sequence 933 BP; 297 A; 167 C; 207 G; 262 T; 0 other;
     gcaattttca tgtggccatg aaatcgaccc cggtgaagtt caaatcttac tgttttgaaa        60
     ctgcggaact atatgtgtct ctttacccgt ggtattacat gccaactgct ttgcacaagc       120
     tcctaattca tggccacaaa attgttgagc gatctgttct tcccgtcgga agaatgtccg       180
     aagaagcgca agagcgaagt aacaagacga taaaatcaaa tcgcaacaat ttttcgagga       240
     aaaatagtag tgagaacacc aatcgtgata tagtgaaccg aatgttgata atatccgatc       300
     cactgatcaa cacagacctg aaaccacccc gtaatcatca caaggaccta ccagaagatg       360
     tactgcagtt attgaaaaat gagaatgatg ttgacaacga attagacgac tcagatgatg       420
     cttcatttgg gacacaatca gattgcgaag attaggttca gaaacaaaag ttttgttctt       480
     aatggcataa cattttgaat tggataaatt aattttagtt ttgaaattgt tcatttgaat       540
     taaataaata taagtcagta aaacacatga actctattct gatcaccagt aaaatacaca       600
     tgacagtaat cgaaatgaca atcgcaatgc ctgaatacgt caagaaatac ttaaaatatt       660
     tataatatgt aataatagag cacaatttat cattttaaaa aagtttgagg ttttgtccgg       720
     tatttgttct agggcggacc actgtgcaat ggcgtggtgg cgagtgggcg atggcggcag       780
     tgaattggag gcgagtggca gttgtggaag atgaggcacg ttggcttgct gtgcggccaa       840
     ccagggatgc gcactgttga ctgttgtcga ttagtgggtt tccttttgga acacttctgg       900
     caggatggag atccggagat ctcttcatcc tta                                    933
//
ID   TRANSIB3_AG repbase;    DNA;    INV; 2070 BP.
XX
AC   AAAB01008960;
XX
DT   29-JAN-2002 (Rel. 7.00, Created)
DT   21-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   TRANSIB3_AG is a coding portion of a TRANSIB-like DNA transposon.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   TRANSIB superfamily; TRANSIB1_AG; TRANSIB3_AG; transposase.
XX
NM   TRANSIB3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2070
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIB3_AG.";
RL   Direct Submission to Repbase Update (27-DEC-2002).
XX
DR   Genbank; AAAB01008960; Positions   16423   14354.
XX
CC   TRANSIB3_AG is a copy of a young Transib-like DNA transposon.
CC   The copy encodes TRANSIB3_AGp transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2067
FT                 /product="TRANSIB3_AGp"
FT                 /note="transposase"
FT                 /translation="FNFLNHTIHYNRVSNMVSLQVREIVDQFNFGDSQITN
FT                 INKALAYVDTKARNRELDIEAARSEVENIYLRAQLQWDQCNRVRGTFEANN
FT                 AEWLASKFPTQLLSNGASTSNTNSCSLPANYEQSSELAERMKIRFMEHSEE
FT                 SANERTSPTRIARRKAYRLKEYNIMKQISLLLQSPRDLLISTDHSDMLSDE
FT                 EVLAFYIDLGLTEAQYKSMSSLVPSRFPSFNAIRRAEALCVPFHEQIVTTE
FT                 CAVKMEMQCLVEYTVRRILEMQKKVLRDFLTEKQLNVLKLRCVFTYGIDAT
FT                 SGHGTDVLISVLSPIKLHLDDASHHIFWLNVTPQSYRFCRPISLQLAKPSK
FT                 ALVLQTKHSVDEQISNLKPMHIVLEDDKAVDVEFEFVLSMIEGKVLSYMLD
FT                 DSSTTCCLICCAAPSEMMDASILASGFIGQEEPLVYSISPIHCWLTFFELL
FT                 LQLSYRMDFKEWQVPEVQRTTFNERMKTVQQRLYEAFGVRVAEADAGSSSS
FT                 TNTMGYISRRVLADPALASTTLNIDQDLIERFRNILIAINSRHPLHPAKVQ
FT                 QYCSDTYRKYLELYSWSRVPAAVQKVLAHAGQLIVRSPLRLGYVGKKSGEI
FT                 EHNYFTSDRELCARTTSKQDALKDPFVEALICSDPKISSISLSNRIKRKKR
FT                 AAYPDVVASFFIFDESYCETDDDDDSNSGDDDEDDLDSLD"
XX
SQ   Sequence 2070 BP; 614 A; 461 C; 470 G; 525 T; 0 other;
     tttaatttct taaatcacac gatacactac aaccgagtga gcaacatggt ttcattacaa        60
     gtgcgagaga ttgtggacca atttaacttt ggcgattccc aaatcacaaa cataaacaaa       120
     gcgttagcct atgttgatac gaaggctcgg aaccgggagc tagacatcga ggctgcccgt       180
     tccgaagtgg aaaacatcta cctacgtgct caactacagt gggatcagtg taatcgcgtc       240
     cgaggcactt tcgaagcaaa taatgcagaa tggttggctt ccaaattccc gacccagtta       300
     ctgtccaatg gtgcttctac atcgaataca aatagctgta gtctgccagc taactacgaa       360
     cagtccagtg agcttgctga acgaatgaaa atacggttta tggagcattc agaagagtcg       420
     gcgaacgaaa gaacatcacc tacacgaatc gctcgccgga aagcatatcg gctcaaagaa       480
     tataacatca tgaaacagat cagcttgttg ctgcaatcgc cacgcgatct tctcatatca       540
     acggatcatt ctgatatgct gtccgatgaa gaagtattag cattctacat agacctgggt       600
     ctgaccgaag cccagtacaa atcaatgagc agccttgtgc cttcccgctt tccatcgttt       660
     aatgccatta gaagagcaga agctttatgt gtgccgtttc atgaacaaat tgtgactaca       720
     gagtgtgcag tgaaaatgga aatgcaatgt ctggttgagt atacggtgcg aagaatattg       780
     gagatgcaga agaaggtgtt gagggatttt ttaacggaga agcagttgaa cgtactcaag       840
     ttacgatgtg ttttcaccta cggcatagat gccacatcgg gccatggtac tgacgttttg       900
     atcagtgtcc tatccccaat taaacttcac ctggacgatg cgtcacatca cattttttgg       960
     ctcaacgtta ctccgcagag ttatcgtttt tgtagaccaa tttcattgca gctagcgaag      1020
     ccatcaaaag cattagtcct tcaaaccaag cacagtgttg atgaacaaat ttccaaccta      1080
     aaaccaatgc acattgtttt ggaggatgat aaagcagtcg atgtggagtt tgaatttgtg      1140
     ttaagcatga tcgagggtaa agttttatca tacatgctgg atgattcgtc gaccacttgc      1200
     tgtctgattt gctgcgcagc cccatcagaa atgatggacg cttcaatcct ggcatcgggt      1260
     tttatagggc aagaggaacc gttggtgtat agtatttcac ccatccattg ttggctaaca      1320
     tttttcgagc tgctgctaca actgtcatat aggatggact tcaaagaatg gcaagtcccg      1380
     gaagtgcaac gaaccacatt taacgaaaga atgaaaaccg tgcaacagcg tctctacgaa      1440
     gcgtttggcg taagagtagc agaagcagat gcagggtctt cctccagcac aaacacaatg      1500
     ggatacatca gccgacgagt gttggccgat cccgctcttg caagtaccac gctcaacatc      1560
     gaccaagatc ttatcgaacg cttcagaaac attctaatcg caatcaatag tcgtcatccg      1620
     ctgcaccccg caaaggtaca acagtactgc agcgacacct atcgcaaata tctggagctc      1680
     tacagctggt cccgagttcc ggcagcagtg cagaaagtct tagcacacgc cggtcaactg      1740
     atagtacgct cacctctgcg tttaggctat gttggcaaga agtctggtga gatcgagcat      1800
     aactatttca catcagatag ggagctctgt gcaagaacaa cttcaaaaca agatgctttg      1860
     aaggatccat ttgtggaagc acttatctgc agcgatccta aaataagttc tatatcgctt      1920
     agtaatagaa tcaagcgtaa aaaacgagct gcttatccgg atgtagtagc gagctttttc      1980
     atatttgatg aaagctattg tgaaaccgat gacgacgatg attctaatag cggcgacgac      2040
     gatgaggacg atttggactc gctcgatgaa                                       2070
//
ID   Transib3_DP repbase;    DNA;    INV; 2783 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   Transib3_DP is a family of autonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; transposase;
KW   Transib3_DP.
XX
NM   Transib3_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-2783
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib3_DP is a family of autonomous DNA transposons that
CC   belongs to the Transib superfamily.
CC   Transib3_DP elements are characterized by the CGNCG target site
CC   duplications and 15-bp terminal inverted repeats (1 mismatch).
CC   The consensus sequence encodes the 680-aa Transib3_DPp
CC   transposase (pos. 432-2474).
XX
FH   Key           Location/Qualifiers
FT   CDS           432..2471
FT                 /product="Transib3_DPp"
FT                 /translation="MAMKNTKLFEIFRNSSTSNEFVETVLNELNLVSDSPE
FT                 QHTSIRKKIMCIHFSIKNKWLTSHRKVESFNSKYASWLIGNSLLYDGPSTS
FT                 TGRAIGRPTKTLDKCSDYTRKRKLVDATCHIDTDHLSEALSIKYTNNKENK
FT                 KAHITKAVSKASPVRLDRIKKSILKPPKLQPKSYTDEEALSLFSDLGMSKE
FT                 KYSILRYSLQQHQVYVLPEYKHITDAKLMARPEENLVTVESAVVKLQDLVQ
FT                 HTTKRLIKSLPHHQIESLPQNLTLISKWGCDGSSGQSEYKQAISTDDKTIT
FT                 DSNMLMASLVPLWLKSDTSEYWRNPRPSSAHYCRPILFKYAKESSELIKST
FT                 VSDIKNQISNIRPSVHKVNEEKSISVNFEFFLTTDGKVLNELTNTKSTLKC
FT                 AFCKKKTQKEFKNLDDSIIEEENLEYDISPLHARIRCMEFILKLAYTIPRE
FT                 GESFDNSTPANEIQKTRKKMIQEKILDKLSLKVDCPKQGFGNTNDGNSSLI
FT                 EKNEITAEITGVDIDIIKRLGVILNILNCKEKINTRKFGEYASKTAELLLE
FT                 KYPEKKLTPTLHKILAHGQILIEHQSLPIGEMSEEAQETRNKDYKKYRNMN
FT                 TCKTSRIKQNQDLFNMLAASSDPYISSIRYVRSQIKSASSYSSEMISLLDI
FT                 PPTKQEVEDYFTETKKFNQLSKYTKNCFFLF"
XX
SQ   Sequence 2783 BP; 1033 A; 481 C; 494 G; 773 T; 2 other;
     cacagtggcg atttcgacga aaagaggtgg caaaagtcgg agattttttt tagcgctttg        60
     gatacaatga atacacgcat ctaatagaga attttccaga gctttttggn atctataccg       120
     attaaactgt cacaacctcg cacgaaaaac ggtcaaaaac ggctatcaca gctcttaaat       180
     cccatacaaa atcatatttt gaccgttttt cgtgcgaggt tgtggcaggt aaatcggtat       240
     agaagccaaa cggctttgta acctgctttt tattatgtca aagggtggta cctacatatg       300
     tgtatatatt gaattcattt ttagcgcagc tctatagtct tattttgact tttaaaggat       360
     tcagttgcgt ataagcaaac atcagtgaat ataattttta tatataattt aagaattgaa       420
     ttttcgttaa aatggctatg aaaaatacca agttgttcga gatatttaga aattcaagca       480
     cctcaaacga atttgtggaa actgttctta atgaattaaa tttagtatcg gatagcccag       540
     agcagcatac aagtataaga aagaaaatta tgtgtataca ttttagtatt aaaaataagt       600
     ggttgacctc acaccgtaag gtagaatcgt ttaatagcaa atacgcaagc tggctaattg       660
     gaaacagctt gctatatgat ggaccctcca cgtccacggg acgagcaata ggaagaccaa       720
     caaaaaccct ggataagtgt tcagattata ctagaaagcg aaaacttgta gatgcaacat       780
     gtcatataga tacggatcat ttatcggagg cactgtcaat taaatatacg aacaacaagg       840
     aaaacaaaaa ggcgcatata acaaaagctg tatctaaggc aagcccggtg agacttgaca       900
     ggataaagaa aagcatcctc aagccaccaa aattacaacc gaagtcgtat accgatgaag       960
     aggccttgtc gctgttttca gacttaggaa tgtctaaaga gaagtattca atacttcggt      1020
     attccttaca gcagcatcaa gtctatgttc ttcctgaata caaacatatt acagatgcca      1080
     aattgatggc aaggccggaa gaaaacttgg tgacggttga atcagcagta gtaaaacttc      1140
     aagacctggt gcaacatact acgaaacggc tcattaaaag cttacctcac catcaaattg      1200
     agagcctgcc acaaaatctc acactgatca gcaaatgggg ctgtgatgga tcttctgggc      1260
     aaagtgaata taagcaagca atatctacag acgataaaac tattacagat tctaacatgc      1320
     ttatggcttc tcttgtacca ctgtggctta agtcggatac atcggaatat tggagaaatc      1380
     ctcgaccttc gtctgctcat tattgccgtc ctatattatt caaatacgcc aaggaatctt      1440
     cggaactaat aaaatccact gtaagtgata ttaagaatca gatttcaaat ataagaccgt      1500
     ctgtacataa agtcaacgaa gaaaaatcca ttagtgtcaa ttttgaattt ttccttacta      1560
     ctgatggaaa agttcttaac gaacttacta atacaaaatc gaccttgaaa tgcgcatttt      1620
     gcaaaaaaaa aacacagaag gaatttaaaa atttggatga ttccataatt gaagaggaaa      1680
     atttagaata tgacatttcc ccattacatg caagaattag atgtatggag tttattttaa      1740
     agcttgcata taccattccg cgagaggggg aatcttttga caacagcacg ccagccaacg      1800
     aaatacaaaa gactaggaaa aaaatgattc aagaaaaaat cctagacaaa ctatcactga      1860
     aggtggactg ccccaaacaa ggatttggaa acacaaatga tggaaactct tcactcattg      1920
     agaaaaacga aattactgca gaaataactg gggtggatat tgacattatc aaaagattgg      1980
     gtgtcatttt aaatatttta aattgcaaag aaaaaataaa tacccgcaag tttggtgaat      2040
     atgcctcgaa gactgcagag ctgttactgg aaaaatatcc tgaaaagaag ctaactccca      2100
     cgcttcataa aattctggca catggtcaaa ttttaattga acatcagagc ctaccaattg      2160
     gagagatgtc agaggaagcc caggaaacga gaaacaaaga ttacaaaaaa tacaggaata      2220
     tgaatacgtg caagacatca cgaattaagc aaaaccaaga ccttttcaac atgttggcag      2280
     cctcttcaga tccatatatt tcatccatta gatatgtgag atcacaaatt aaatcggcaa      2340
     gcagttattc ttcagaaatg ataagtttat tagatattcc tcccactaaa caggaagtgg      2400
     aggattattt tacagaaaca aaaaaattca accaactttc naaatataca aaaaattgtt      2460
     ttttcttatt ttaaattttt ttaaattagg ttaagttgaa aattaaatca aaaataatat      2520
     tttatagtaa aaaacagcat taaaagtact ttatcgataa aaaaaaaaaa aatagagcat      2580
     tttacatagg aaaatatgca ccggcaacaa agttcaactt taacccatta ttgtgaagct      2640
     tttagacact gtagcacaat ttacttaagc agattaaatt ttgaaagctt tttctttcaa      2700
     atgcagtttg tttcatgaag atatctttat ttgttcagaa gttattaatt tagcaagctg      2760
     aaacggcgga attccccact gtg                                              2783
//
ID   Transib4    repbase;    DNA;    INV; 2610 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 6.03, Created)
DT   29-JUL-2005 (Rel. 10.08, Last updated, Version 4)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; DDE-class;
KW   TRANSIB family; TRANSIB4p transposase; TRANSIB4.
XX
NM   TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-2610
RA   Kapitonov V.V. and Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
RN   [2]
RP   1-2610
RA   Kapitonov V.V. and Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   PLoS Biol 100(11), 6569-6574 (2003).
XX
RN   [3]
RP   1-2610
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   Pro 3(6),  (2005).
XX
DR   [3] (Consensus)
XX
CC   Transib4 belongs to the Transib superfamily of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   Transib4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of Transib4 which are ~93% identical to the
CC   consensus sequence.
CC   Transib4 encodes the Transib4p transposase (positions 497-2219).
CC   The transposase is not perfectly recovered since the genome
CC   harbors only a small number of Transib4 copies, which are damaged
CC   by mutations.
CC   Transib4p is 37-44% identical with Transib1p-Transib3p.
CC   There is 60-62% nucleotide identity between Transib4 and
CC   Transib1-Transib3.
CC   The original TRANSIB4 name was replaced by Transib4 [3].
CC   In [3], the correct page number is e181.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(497..1537,1549..1800,1809..2219)
FT                 /product="Transib4p"
FT                 /note="transposase"
FT                 /translation="CFLPLFALFCETFYVVGVYEFSHAVLLDVWSNNKRDA
FT                 DAVNSYILENIEENFETKEQKITISKKVNQFIAYANKHLRKCNRMLDRFKR
FT                 NHLLWLASKIVVVIHKPEMTLCKPGRKQLTYEDAGPQPKKKISKLAGCRTR
FT                 AFNTTSRTCCFNFRKKNEAGRNGLCIKKKSISSENIHDIKKKIETNHPIKI
FT                 SADNALALLIENGFTKQQYTNIKALNKQQGCDIFPPYSKVAEAKLKCRPSE
FT                 HKISEKRPGVSXQDLLDHTAGHILLIQEXVFCVHPDPTNCTFIVSYGFDGS
FT                 TDQSTYKQRFLSNECIALDQFLFVTTIIPLKLIDEINNRVIWIHSSPQSVR
FT                 FVGLXKLSLFIKESAALILKEKQILDAAIKNLRPYSYTSKNQIIAYTADQR
FT                 SFSNSKIFSSVLNLDYKIIYNFYIILISISCEHTIDAEKFKSLFLSPTIHK
FT                 ILVHGYQIINQFIVPVGVLGENASEARNKLYKSDRKSHARKCSRLANITDV
FT                 FNRAVDSSDPLLSSLCLRDRSKFGKKKLLPKEVIDILQNPDAELYKSSYHS
FT                 NNKEEEVEVEDEFNCLNIFLEEEVEE"
XX
SQ   Sequence 2610 BP; 903 A; 454 C; 446 G; 805 T; 2 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tatgagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attgcttatg cgaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttcataagcc agaaatgaca ctatgcaaac ctggccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa agcataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tatactaata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtngcaaga      1260
     tttgctagat catacagctg gccacatact tttaatacaa gagnaagttt tttgtgttca      1320
     tccagaccca acgaattgta catttattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactaca attataccgt tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     agtgctgccc ttatattgaa ggaaaaacaa attttggatg cggctataaa aaaccttaga      1620
     ccatattcct acacttccaa aaaccaaata atagcatata ctgcagacca gcgttcgttc      1680
     tcgaacagca agatattttc gtccgttttg aatttggact acaaaatcat ttacaatttt      1740
     tatataattt tgatttcaat ttcttgtgag cacacgattg atgcggaaaa atttaaatct      1800
     ctatacctct attcttgtca ccaaccatcc acaaaatatt ggtacatgga tatcaaatta      1860
     taaaccaatt tattgttcct gttggtgtcc ttggagaaaa cgcgtcagaa gcgcgcaaca      1920
     aactttacaa gagcgataga aaatctcacg ccaggaaatg tagccgacta gcaaacatta      1980
     cagatgtttt caacagagca gtggattcat ctgatccttt gctttcaagt ctttgtttaa      2040
     gagatcgaag taagtttgga aaaaagaaac tcctcccaaa agaagtaatc gatattcttc      2100
     aaaatccgga tgcagaactt tataaatcaa gttatcattc taataataaa gaagaagaag      2160
     tggaagtgga agacgaattc aattgcctta atatattttt agaggaggaa gttgaagaat      2220
     gacaatcaac ttaataaaat ataaaaaaat ttattgactt ttatctcata ataatggttt      2280
     ttgcatcttg tgtcctcact tcgctcccac gccagtcccc cagggaagac acctccggat      2340
     ccaccggttg aaccacagac atattaacac ccacacctcc ttcgccaccc atccatctcc      2400
     ctttaaaacc gctttcattt gtatataaat acatttttca ctttattttc aaggattgtt      2460
     tttgtgggcg gagatgaagg cgtggtcaga tcaaaaaata aacaaaatcc gaaattctat      2520
     ttaaatccta attataaata taaaaaaaat caagtcgcta tctttaaaat tgtaattaat      2580
     accaaaattt ccggcttttt acccatagtg                                       2610
//
ID   Transib4_AA repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   29-JUL-2005 (Rel. 10.05, Last updated, Version 2)
XX
DE   Transib4_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib4_AAp transposase; Transib4_AA.
XX
NM   Transib4_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-928
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib4_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib4_AA encodes remnants of the Transib4_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
XX
FH   Key           Location/Qualifiers
FT   CDS           71..862
FT                 /product="Transib4_AAp"
FT                 /note="transposase"
FT                 /translation="LLNVVLTVKWGFDGTSGVSEHKMKFEGDDGTFSDKSM
FT                 FVTSLVPLKATANGKVLFVNKRPSSTRYCRPIRIQYIKETVAVTVQEKEHV
FT                 IQQINELTPFNIPMHGRVIRIHCRMHLTMIDGKAINAITSTKSTQTCYVCK
FT                 ATPKDMNNLDRIYSKVIDASTFDFGLSPLHAWINFFEFFLHLAYKLPVKKW
FT                 RITNEYVNIVEERKKQIQRKFKIEMGLIVDQPCAGGAGTSNDGNTARRFFF
FT                 KPGNVGQNNRAKPGTDQEMCSNT"
XX
SQ   Sequence 928 BP; 317 A; 170 C; 204 G; 237 T; 0 other;
     cctggaacac acagcacaaa ggataataga agccaatgca aatttgttgt gtaattttac        60
     ggatgcagaa ctattgaacg ttgtgctgac ggtaaaatgg gggttcgacg gaacatctgg       120
     ggtgagcgaa cacaaaatga aatttgaagg agatgacggt actttttcgg acaaaagtat       180
     gtttgtcact tcactcgtgc ccctgaaagc tactgcaaat ggaaaagttc ttttcgtaaa       240
     taagcgacca tcatcaacca ggtactgtag acccatcaga attcagtaca tcaaagagac       300
     agtggcggtc acagtacaag agaaggagca tgtcatacaa cagatcaatg agttaactcc       360
     gttcaatatc cctatgcatg gaagagtgat cagaatacat tgtaggatgc atttgacaat       420
     gattgatggt aaagctatca atgcgataac gtctactaag tccacacaaa cctgctatgt       480
     ttgcaaggct actccaaaag atatgaataa tttggatcgg atctacagca aagtgataga       540
     tgccagcaca ttcgactttg gactgtcacc tcttcacgca tggatcaatt tttttgagtt       600
     tttcctccat ctagcgtaca aattaccggt gaaaaaatgg aggattacaa atgagtatgt       660
     gaatatcgtt gaagagcgta aaaagcaaat tcaacgaaaa ttcaaaatag aaatgggact       720
     cattgtggac caaccttgtg caggaggagc aggtacgtca aatgatggca atactgctcg       780
     tcgttttttt tttaaacccg gaaatgtcgg ccaaaataac cgagctaaac ctggaactga       840
     tcaagagatg tgcagtaata cttgaaacta tggcatcagg aatggaaatt aacatcgaaa       900
     aatttgattt ctgtcgaaaa cagctgag                                          928
//
ID   Transib4_DP repbase;    DNA;    INV; 1334 BP.
XX
AC   AADE01007081;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib4_DP is a family of autonomous DNA transposons - a partial
DE   fossilized copy.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; transposase; Transib4_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1334
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   GenBank; AADE01007081; Positions       1    1334.
XX
CC   Transib4_DP is a family of autonomous DNA transposons that
CC   belongs to
CC   the Transib superfamily. The complete Transib4_DP is not obtained
CC   yet.
CC   Its partial copy encodes remnants of the Transib4_DPp
CC   transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1305
FT                 /product="Transib4_DPp"
FT                 /translation="VKFLTADLTLSYGFDGSSGQSNYNQGYSGDEAFDMDS
FT                 SILATTVTPLRLVDSSGNILWNNRTPQSIRFCRPLRLAFMKETKECILKEN
FT                 SDLKEEIKHLRPCKMIMEDGKFVYISFNLQLTAIDGKVLNALTGTKSTHAC
FT                 PICGALPSDFINNKNFQCEKFLPILSNLKYGLSPLHCWIRMFEFILHAGYK
FT                 CNIKKWKICNQSDKMEVYERKRHIQELFWEQLSLKVDRPKTGGFGSTNDGN
FT                 TARRAFSDPNIFSKITGIDEQLISNLRIVLICLSCQLPINVSKFKQFCYKT
FT                 AEIIIDKYPWLPMTATVHKILVHSSDIMESTVLPVGYFGEEGAESRNKLYK
FT                 SDRLHHARKCSRMHNFTDVFHRAMDTSDPIISSVNLDRRIQRQNRINLPTE
FT                 VLEMLSSEGSPLEDHGRNETDYDDNFGLQWSMEVENEEHEA"
XX
SQ   Sequence 1334 BP; 465 A; 222 C; 262 G; 385 T; 0 other;
     gtaaagtttt tgactgcaga tttgactttg agttatggtt tcgatggtag ctctggacaa        60
     tcaaattaca accaaggtta ttctggagat gaagcatttg atatggactc cagcatttta       120
     gccacaactg ttacaccatt aaggctagta gattcatccg gaaacatact gtggaacaac       180
     cgaacacctc aatctattag attttgtcgg cccttaagac tagcctttat gaaagagacc       240
     aaggagtgca tattaaaaga aaattcagac ttaaaagaag agataaaaca cttgcgaccc       300
     tgcaaaatga ttatggaaga cggaaaattt gtttatataa gtttcaattt acaactaaca       360
     gcaatcgatg gcaaagtgct taacgccttg acaggcacaa agtcaacaca cgcctgtcca       420
     atatgtggtg cattaccttc cgattttatt aataataaaa atttccaatg tgaaaagttt       480
     ttgcccattt taagtaattt gaaatatgga ttaagccctc tacactgctg gattcgcatg       540
     tttgaattta ttttacacgc tggatacaag tgcaatatta aaaagtggaa aatatgcaat       600
     caaagtgata aaatggaagt ctatgaaaga aaaaggcata ttcaagaatt gttttgggaa       660
     caactttctc taaaagttga tagaccgaaa actggcggat ttggcagtac aaatgatgga       720
     aatacagccc gccgtgcctt tagtgaccca aatatatttt caaaaatcac tggcattgat       780
     gaacagctta ttagcaactt aaggattgtg ttgatatgtc tttcatgcca attgccaata       840
     aatgtttcaa aatttaaaca gttctgctat aaaactgcgg aaataattat tgacaaatac       900
     ccttggttac caatgactgc aacagttcac aaaattctgg ttcattcaag tgatattatg       960
     gaaagcactg ttcttcctgt aggatatttt ggagaggagg gcgctgaatc tagaaataaa      1020
     ctatataaat ctgatcggtt acatcatgca cggaagtgca gccgaatgca taattttaca      1080
     gacgtgttcc accgagcaat ggatacatca gatcctatta tttcatcggt aaatctagat      1140
     agacgtattc agagacaaaa cagaataaac cttccaactg aagttttgga aatgttatca      1200
     agcgaaggta gcccattaga agaccacggt cggaatgaaa ctgattatga tgataatttt      1260
     ggattgcaat ggagtatgga agtggaaaac gaagagcatg aggcttaaaa acatgtaggt      1320
     ttgtataatc tggt                                                        1334
//
ID   Transib5    repbase;    DNA;    INV; 3001 BP.
XX
AC   .
XX
DT   31-MAY-2005 (Rel. 10.05, Created)
DT   31-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib5 is a family of Transib DNA transposons - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Transib5.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3001
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   Direct Submission to Repbase Update (31-MAY-2005)PLoS Biology
RL   3(6), e181 (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib5 is a family of Transib DNA transposons. It is
CC   characterized
CC   by 13-bp terminal inverted repeats and 5-bp target site
CC   duplications.
CC   The consensus sequence encodes the 595-aa Transib5p transposase
CC   (pos.
CC   780-2654).
XX
FH   Key           Location/Qualifiers
FT   CDS           780..2564
FT                 /product="Transib5p"
FT                 /translation="MVHKEGYPRRKTECVEKICKQIVYFWTRYNRKKASFL
FT                 KYQCEWLNQKKTILLKCNHNISEKIMESDHRGRPKVDFSMSSSRSKRRRLA
FT                 ELAKIDETAVSALLNEFEKKKLLPADPIEIISLLIEASLSKNQYLLIRNFV
FT                 NTKIGFDLFPSYQSVLHSKKMRYPENIFVDESHAEVELQSLLNNTASSILE
FT                 LQAEVVETLTDNCVKNLLLIGKWGFDGSTGHSEYNQKFSNNDLQDKSLFVT
FT                 SYVPLQLISKDNQQIIWKNNRPSSTRYCRPVRFQFKKETTKLSIEEEKYFK
FT                 EKINLLNPTEVFINDKKINVEHSLQLTMVDGKICNALSESSSMKCYLCGAS
FT                 PTEMNNLAKCMSKDVKTEYFEFGLSPLHAKIRFFEYFLHLSYKSEIKMWQV
FT                 RGSDHKIKVMKRKQKIQKEFREKMGIIVDKPRDGGKGSSNDGNVARKFFSN
FT                 PKLASKITGINENLIYRCATILQAIASGYKININKFNTYALDTAKELINEY
FT                 PWYYLPATVHKVLIHGSAVIQHALVSIGELSEEAAESNNKELKKCRLNHSR
FT                 KMSRITTNADIMNSLLIRSDPFISGHRKLGKKDKSALFESVYALLEEG"
XX
SQ   Sequence 3001 BP; 1045 A; 455 C; 528 G; 973 T; 0 other;
     cacagtggtt ccgtcagagg ccaaaaataa aaaaaaacat ctaaatatat ttacgcataa        60
     agtaaccaaa ttgtctccaa atagtcaaaa tatttccagc caaaaccagt ttttgcttca       120
     aacctaacgg tactttctaa aaatagaatt aaagttatgc acacgtgttc atttgtgtag       180
     cgaaattgca cgcattgtaa tttctgcatt ccaaaagcaa acttcaaagg catcatactt       240
     tcagtgagga gcttcgattt aaataattta aaatggattt taaagtagaa ggtatttact       300
     ttgtatacaa aaactaataa ttaactaatc agttaactaa gttaagtaaa attaatatct       360
     tcaaatggcc tttttattgt cttttttgtg ggtattttca tgtttactta aacttttagt       420
     tatgttcctt aaatattaaa ttaagcatag ttttaagata ataaaagtgt tgagttcagc       480
     tgcggaaact tgcggatgtg cttgtaatat tgaatctact aaacgcccat atttgttatt       540
     tttgggttaa gtttgcccag tgaagtccct ttgtgtcttt gtttttgtgt ttcgcgtttg       600
     tgtcgttttg tcttttgtgt ttgtgtcgtt ttgtcttttg tgtttgtgta taatcttcca       660
     tgttaattta acttttatta tattaaacaa gtaattatat tgatttgttt aaatttattt       720
     ttgcttatgg aagacgattc agagctctgt gtgtttccac acctatatat ttttgattta       780
     tggtgcacaa agaagggtac ccacggagaa aaactgaatg tgttgaaaaa atttgtaaac       840
     aaattgttta tttttggact cgctacaatc ggaaaaaagc ttccttcctt aagtaccaat       900
     gtgaatggct gaatcaaaag aaaacaattt tattaaaatg caaccataat atatctgaga       960
     aaattatgga aagtgatcat cgtggccgtc caaaagtaga tttctcgatg tcatcatcaa      1020
     gatcaaagcg acgccgttta gctgaactgg ccaaaataga tgagaccgct gtatctgctt      1080
     tactcaatga atttgaaaaa aaaaaattat tgccagcaga tccgattgaa ataatttcgc      1140
     tattaattga ggcaagcttg tctaaaaacc aatatctttt gataagaaac tttgtaaaca      1200
     ccaaaatagg ctttgattta tttccaagtt atcaaagtgt actacattca aagaaaatga      1260
     gataccctga aaatattttc gttgatgaat ctcacgctga agtggagtta cagagcttat      1320
     taaataacac agcgtcaagt atattggagc ttcaagctga ggtagtcgaa acactcactg      1380
     ataattgtgt taaaaatctt ttattaattg gaaagtgggg atttgatgga agtaccggtc      1440
     atagcgaata taatcaaaag ttttccaata atgatttaca ggataaaagt ttatttgtca      1500
     catcctacgt acctctccaa ctaatttcaa aagataacca acaaataatt tggaaaaaca      1560
     acagaccatc gtcaacacgt tactgcaggc cagtacgatt tcaatttaaa aaagagacaa      1620
     caaaactttc aatcgaagag gaaaagtatt ttaaggaaaa aataaacctt ctgaatccaa      1680
     ctgaagtatt tataaatgat aaaaagataa atgttgaaca tagcttacaa ctaaccatgg      1740
     tggatgggaa aatatgcaac gccttaagtg aatcttcgtc tatgaaatgt tacttatgtg      1800
     gagcaagtcc cacagaaatg aataacttgg caaaatgtat gagtaaagac gtaaaaactg      1860
     aatattttga atttggttta tctccacttc atgcgaaaat tcgatttttc gagtattttt      1920
     tacatctttc ctataagtcc gaaataaaaa tgtggcaggt gagaggttct gaccacaaaa      1980
     taaaagtaat gaaaagaaag caaaaaatac agaaagaatt tcgcgaaaaa atgggaatca      2040
     tagtagataa gcctagagat ggtggtaaag gttcttccaa cgacggaaat gtggcaagaa      2100
     aatttttttc taatccaaaa ttggcttcaa aaattaccgg aataaatgaa aatttgatat      2160
     atcgttgtgc cacaatacta caagctattg catcggggta taaaattaat attaacaaat      2220
     ttaatacata tgccctcgat acagcaaagg agttgatcaa tgagtatcca tggtactatt      2280
     tgccagctac agtccataag gtgctaattc atggatctgc agtaatacag catgcgttag      2340
     tgtcaattgg agaactttcg gaggaagctg cggaatctaa caataaagaa ttaaaaaaat      2400
     gtagacttaa tcacagccgg aagatgtcac gcattacaac aaatgcagac attatgaatt      2460
     cacttctaat aaggtccgac ccatttataa gcggacacag aaagctggga aaaaaggata      2520
     agtcagcgtt atttgagtct gtatatgcct tactagagga ggggtaataa ttattatcat      2580
     attgttcatt atcattaatt taaattaata aaaattgcaa caatttaaca tttcctcact      2640
     ttgtttatat ttgtttctgg ttatggtgga gtttggggtt tccctggggg aggtatatta      2700
     cgccaaatca tattcatgtt cttactacat ttaaaaaata tttttttaga ccataagtta      2760
     tgattttatc agtcttctat gatgtatggt catgttatat ttgatttaaa aaaatgctgc      2820
     atacttcttc ggggggaaga atatattgtt tgccgaaaaa atggggttgg agggccccaa      2880
     tctcaaaaat ctttttcgca tgttttcata agctctatta gatgcctaaa acgaaatctt      2940
     aggcttctag ctatattgga agtatttatg gccgctgctc catacaagcg gaaccactgt      3000
     g                                                                      3001
//
ID   Transib5_AA repbase;    DNA;    INV; 1033 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   29-JUL-2005 (Rel. 10.05, Last updated, Version 2)
XX
DE   Transib5_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib5_AAp transposase; TRANSIB4; Transib5_AA.
XX
NM   Transib5_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1033
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   Transib5_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib5_AA encodes remnants of the Transib5_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence data.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1030
FT                 /product="Transib5_AAp"
FT                 /note="transposase (conceptual translation)"
FT                 /translation="KQFSSKKPFVLPNSIELHLPSTSGGSKGRKKIPFQDS
FT                 SDCVKRRKTAMLRATHNADELSYAATMKLREEGKRAQASVLQMATQSSPSH
FT                 VAHLLNTSKISAKFDIVPYTPDEALALICNAKLTLSQYKELRINAKDRNAD
FT                 LYPSYKKVLEAKKRCYPEDAAITINDTEMDIKLQALLDHTAHRIVLANSDN
FT                 LINFSDEELKYITLITKYGFDGNSGVSQFKQTFTGDDGTKSDGSIFITSVV
FT                 PIQATGHSKTLFKNPRPSSTRYCRPLRIQYTKENTELILAEKAYLDDQISA
FT                 LKPSTVEHMGRTIIINHKLLITMVDGKVCNALTSNKSSQRCLYMWCNAFAD
FT                 "
XX
SQ   Sequence 1033 BP; 346 A; 215 C; 192 G; 280 T; 0 other;
     caagcagttt tcttcaaaaa aaccatttgt cttgccaaat tccattgaat tgcacctgcc        60
     ctccacttca ggaggctcta aggggaggaa aaagatacca tttcaagata gctctgattg       120
     tgttaaaagg cgaaaaactg caatgttaag agctacgcat aacgcagatg agctttctta       180
     tgcagcaact atgaaacttc gcgaagaagg aaaacgtgca caggcttcag tattgcagat       240
     ggctacccaa tcaagcccaa gccatgttgc acatttactt aataccagta aaatttccgc       300
     caaatttgat atcgtaccat atacacctga tgaagcatta gcacttattt gtaatgctaa       360
     gcttacacta tcgcaatata aagagttgag aataaatgct aaagatcgta atgccgattt       420
     gtatccttca tataagaaag ttcttgaggc gaaaaaacga tgctaccccg aagatgcagc       480
     tatcaccatc aatgatactg aaatggatat caaattacag gccttgcttg atcacacggc       540
     acaccgcatt gttctggcca attcagacaa tttgattaac ttttcggatg aagaattaaa       600
     atacattacc ttgataacca agtatggttt cgacggaaat agtggtgtat ctcagtttaa       660
     gcaaacattc accggtgatg atggaacgaa gtctgatgga agtattttca ttacttccgt       720
     agtaccaatc caagcaacag gacattctaa aactttattt aagaacccac ggccgtcgtc       780
     tactcgctat tgcagacctc tacgtattca atacacgaaa gagaacacgg aactgatttt       840
     agctgagaaa gcatatctcg atgaccaaat atctgcttta aaaccatcaa cagttgaaca       900
     catgggacgc acaatcatca tcaatcataa gcttttgata actatggttg atggaaaagt       960
     atgtaacgct ttgacatcga ataagtcttc gcaacgctgt ttatatatgt ggtgcaacgc      1020
     cttcgcagat gaa                                                         1033
//
ID   TransibN1_AG repbase;    DNA;    INV; 978 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   13-JUN-2005 (Rel. 10.07, Last updated, Version 3)
XX
DE   TransibN1_AG is a Transib-like DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   TRANSIBN1_AG.
XX
NM   TRANSIBN1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-978
RA   Kapitonov V.V. and Jurka J.;
RT   "TRANSIBN1_AG: a family of target site-specific nonautonomous
RT   TRANSIB DNA transposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 83-83 (2003).
XX
DR   [1] (Consensus)
XX
CC   TransibN1_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the Transib superfamily originally identified in Drosophila
CC   (see
CC   description of TransibN1-Transib4 in drorep.ref).
CC   TransibN1_AG is characterized by a remarkable target site
CC   specificity.
CC   Its copies are inserted into the CCagtGG target site, and CagtG
CC   is
CC   a 5-bp target site duplication. There are ~100 copies of
CC   TransibN1_AG
CC   in the genome.
CC   The TransibN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of 30 copies. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   TransibN1_AG occurred recently (in the last 1 Myr).
CC   TransibN1_AG has 17-bp terminal inverted repeats (2 mismatches).
CC   Original name was TRANSIBN1_AG (replaced by TransibN1 in May
CC   2005).
XX
SQ   Sequence 978 BP; 332 A; 167 C; 163 G; 314 T; 2 other;
     cacagtgggc aaccgccata caaacgccgg gatgaaaatc aattcctcgt gctattgcar        60
     tttwtcttca ttcaatacaa ttgctcttac tatacagggt agtcctatac taaaatcgtc       120
     aagacagcga ataaaactta ataattatcg ctcacaacat tgcattattg cgtatcagtt       180
     aacagcatca ataataattg ttaggaatta aaacgaaggc ggaataagtt tctgactgaa       240
     aacgaatttt taaagtatta cgcactaaaa aagttgtgtt tttcatggtt tgtttggaaa       300
     agagccgatt cctatcttac gacctttttt aaactgtttt tcctctcttc agctttgttt       360
     tctgcctgtt tgtttcaaat gcccgtttat gacaggtagt tggatactgg tggtgtatgg       420
     ctcatacaac aacacgtcaa aatcgctcgc gctattttca agaaaaagtt taataatttt       480
     cggggtcgca gatggtcgca gctaatttta acgacaatgc gtaggaaaat tgttgatctt       540
     tccaatgata tacgactcac gagtgaaatc gagtcgaatc ataaaaaaaa tcactctcca       600
     aaataaaaat atccaaaaat tcagcagtga tgtttggttt tcaatcattt atgaacttta       660
     aaaacaagtt tttgcaaaat attaagacat aacatcaaag tatgacaaaa aacctttcca       720
     acgacacatt gattatcaaa atctaaccat catatactaa aatatgatgg tttatgttcg       780
     gtcgaaaaat agctcaaagt tgggacaaaa aacccaaagt ttacactttg atggcctata       840
     tctcagtaag tttaagataa aaacgtgaaa tattttggtt tcaactaagt ttaagtatct       900
     attttaagaa aatgattatg gtgtaaacct gcgatgaagt tggtttttcg atttttatac       960
     aggcgtttgc ccaatgtg                                                     978
//
ID   TransibN1_DP repbase;    DNA;    INV; 1194 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   TransibN1_DP is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   TransibN1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1194
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   TransibN1_DP belongs to the TRANSIB family of DNA transposons.
CC   This element is characterized by 5-bp target site duplications.
CC   TransibN1_DP has 36-bp terminal inverted repeats.
XX
SQ   Sequence 1194 BP; 400 A; 207 C; 202 G; 385 T; 0 other;
     cactatggtc cgaacgacca cttttgttgg ccaaaaccta atttttcaaa gtcaaaactg        60
     aaacctggtt ttgatcgctc tgcattagaa aaagatcgac cattaaatct gcgtaccaga       120
     aatttccata gatggcgcca cattcgcaaa atcagctgtg caacccaact gtttttatag       180
     taaagcacgt gaagggaaaa agtggcaaat taataaccac tttagatctc tcaaaaattg       240
     aaaaacgcca agacgtgatt aaattttttt gatgaatctt aatctgtcgg gttcttacta       300
     cgtgttttga gtttttaact gtctctagta gttgtgatgt cttcgtaatt gaaggttaaa       360
     gtgaggcctt taacatgtgc caacttgtaa tgaaaactaa tttttgaaaa ggtgtacaaa       420
     gtgagtccta cctagtccca ccctgaaacc ttttctgtgt cgtagattaa taaattcttt       480
     ttgaaatgta tatagttaga aatgccactt tttaccacaa ttcttggaat ttgcattaat       540
     agagcataac ctcaaattcg aaaatgcaga tttgtttgcc gtatggaatt cagagaaggg       600
     taaaattatc aattattgaa aacggatctt aaggcgacat atcatatgaa attaataaag       660
     cttttgaaga taccagcaag aaaatttgtt accgtttggc aacataccgg aacaaatgcc       720
     ggtaaaattc aaagatgttg gaacgaaaat atgtggattg gccacaagcc tttatttcaa       780
     tacatttatc tttatgtcca aagaatgcta actaagttcg taaggctgta caggacccag       840
     tcggaaagcc ggcacatatc tcacctaacg aggcgttaac cttgcttcta gacaaggatt       900
     tcggcaataa tttacggaaa cctttaaacg attttatttt tatttaaatc aaaatttttt       960
     ttagtcgtgc aacgccgttt tcttaaataa aatatgctta atactttttt tcactataac      1020
     taaaaattta aatatgcatt attaaaaaaa ggggcggtgc cacacccatt ttttttctta      1080
     aatccatttc ttattgatta tatatatcca atacaaaaaa ctaaatgaaa aaatcttgtt      1140
     ccgttcggga gttattaatt ttggccaaca aaagtggtcg ttcggaccat agtg            1194
//
ID   TransibN2_AG repbase;    DNA;    INV; 1750 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   TransibN2_AG is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   TransibN2_AG.
XX
NM   TransibN2_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1750
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   TransibN2_AG is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. TransibN2_AG elements are
CC   characterized by 14-bp terminal inverted repeats (1 mismatch) and
CC   5-bp target site duplications. This family was active less than 1
CC   million years ago (some copies are less than 1% divergent from
CC   the consensus sequence).
XX
SQ   Sequence 1750 BP; 633 A; 266 C; 261 G; 589 T; 1 other;
     cacaatgggc atttgccggg atgaaattca aaaaatcaac tttgtaatag cgcaattcca        60
     aataataggt tttaatacta agggttaaac taagaaaaat accaaatatg agctctttat       120
     ctgttctggt tctctagaaa acacctctca aagtcgagat ttgttaaaaa aacgcagaaa       180
     aatcttcact tttttggaaa actttaaacc tttgtaactt tttcaaatat gaaccgattt       240
     tgataaattt agacatttta taaaggatat ttagtcagct ttataaacac atgaaaaatt       300
     ttgagctaag ttaattttat gcaaaaatat acgataataa ctgaagaaac ctcctgaaaa       360
     ttttcatmat tttaattttt gacttgatgc cattataaaa gtggcgtaga gtggcgttgt       420
     ctcatatatg tcacatcata gtgtaatata tatactatca atctgtgaag aaatattctg       480
     cgaaagtttg cgaacgcgaa ttttattgaa gttttttcac atcaactttt tctaaaaaca       540
     gacacatgcg taactaggcg gctccatagg tgcctagtgt agcgtatttc gtgtattcta       600
     caaaaatata ttctacgtgc ttttgatcaa ctttcatttc aattacgaag ctgtgtatct       660
     tagtttcagc tcatgtactt atcttatatg taaatttcta ttctaaccta actttatcat       720
     taaatataat gaagcaaatc agaaccaaat accttttggt cctactgcag attatagaag       780
     gatataagga aagtaattct taaattatac gcataacagg aaaacgttat gaatgcagta       840
     gcatctattg gcgttttggg agaagaaact cccaaaactc atgacaaact aaatataagg       900
     atagagggga gatgctacaa agaatatttt gcaagaaaga aaatgcatcc agaaggacat       960
     tttgtataat gagctgtatt cctctgattc gttaaccagt tcaatatcag tagctacacg      1020
     cactaaaaca aagacagggt ttaactttac aaatgaagta aatacttagt ttgtagctat      1080
     cgtgcaattt tgattttttc agatagttgt aaaaccaaga aggattttta gttttattac      1140
     cccttctgaa ggcagtacag cacttggaaa ggtattggat gaatattcaa agacaaacaa      1200
     tatgtgctgc ttttcattac gaatttggga agtactttat ttcaatgcac ctgctctatc      1260
     taattattta aatgccttta ttcatgtctt tagaaaagtg aactagacgt caggagcttg      1320
     taatagcatc cacctaagtt gtgtatgtaa atttttaata tttgtactac ctgtgagtaa      1380
     aagtgacgag aattagctac aattgtccta tacaaagcag aaaaaattat cttattcaaa      1440
     attattatgt tttgtttata tattattatt attattattt atttaatctt cattatggaa      1500
     cattacagta tattttaaaa tggtttatac tattagcaac aaataataca agaaaaaaaa      1560
     cacacaaaat taataaaact aagcaaagat cccttaaaac actattttat gtagcgccac      1620
     ctggtggtat ggatgcgaac tacaaataaa atgttattta ctatcataat actttactac      1680
     aaacgataaa aactaacaat ttctgcaaaa ataattttat cccgcaattt gttctaaact      1740
     gcccattgtg                                                             1750
//
ID   TransibN2_DP repbase;    DNA;    INV; 40 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   TransibN2_DP is a nonautonomous DNA transposon - a partial
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; TransibN2_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-40
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   TransibN2_DP belongs to the TRANSIB family of DNA transposons.
CC   This element is characterized by 5-bp target site duplications.
CC   TransibN2_DP is characterized by its TIR only. There are >10
CC   elements in the genome that have this TIR and different internal
CC   parts.
XX
SQ   Sequence 40 BP; 14 A; 9 C; 13 G; 4 T; 0 other;
     cacagtgggg cctcagccga aaagaggtgg caaaagtcaa                              40
//
ID   TransibN3_AG repbase;    DNA;    INV; 959 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   01-JUL-2005 (Rel. 10.08, Last updated, Version 2)
XX
DE   TransibN3_AG is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; TransibN3_AG.
XX
NM   TransibN3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-959
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   TransibN3_AG is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. TransibN3_AG elements are
CC   characterized by 13-bp terminal inverted repeats (1 mismatch) and
CC   5-bp target site duplications.
XX
SQ   Sequence 959 BP; 336 A; 154 C; 145 G; 324 T; 0 other;
     cacagtgggc agctgccggg atgaaagtcc aaaaattaat tatcatattt ctttaatccg        60
     aggaaagcat tgtaatctac agtatcaaac taagaaaaac acgagatttc agtcccctag       120
     tcgtattagt tattacgata gagactccta aagtcttagg tcttgaaaaa actcatcata       180
     acaactatat ttttttacct tctttaaacc attgtaactt tcacaaaaat caatcaaatt       240
     ttaaaaatga atatgttttg gaaaggtttt aatctattct aaacaaaaat atttagttta       300
     tgaaaatatg tcaattactt aaaaagttaa agagtatagt gtgcactact tcctctaaat       360
     tgtatcaatc atgtatcttt gacatcatgc caaatttgaa caccgtaaaa caccgtggta       420
     tcatgtatac cacgtcaaag ctttacatct aaacaaaaga tctgtaaaga aattagccgc       480
     tactttcgcg caactttggc agatattggc attttaatga cagtataaaa tactttcaat       540
     aaaacaaagc gttttctggt gaagtatgac taatatccgt atatttggga tgtttagggc       600
     agtttttgat gaaatttgat catcgaatgt gatgatcaat gatgacgtga tgattgatca       660
     tcgatatttc ggaatgttgc tagcaaacca aatgtaccat gtaagcttta ttttattaca       720
     gtcagggtac gtagtatatt aagtataacc ccgtatattc gttacgcagc caaagaagaa       780
     catgtatggg atagtaagga tattttcaaa aataattata atctttgcta cataatcata       840
     aaacattcat attttgttta atttagattt tcaacattta cactataatg tacctaagaa       900
     atcatgtatt caatgacaat tacttttatc ccgctttttg ttctacggtg cccactgtg        959
//
ID   TransibN3_DP repbase;    DNA;    INV; 1547 BP.
XX
AC   AADE01000709;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   TransibN3_DP is a nonautonomous DNA transposon - a fossilized
DE   copy.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; TransibN3_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1547
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   GenBank; AADE01000709; Positions   29631   28085.
XX
CC   TransibN3_DP belongs to the TRANSIB family of DNA transposons.
CC   This element is characterized by the CACTG target site
CC   duplications.
CC   TransibN3_DP has imperfect 29-bp terminal inverted repeats (5
CC   mismatches).
XX
SQ   Sequence 1547 BP; 547 A; 292 C; 328 G; 380 T; 0 other;
     cactatggga aatttgacaa ctttttgtga ccacaaacca ttcttccaaa ctcattaaaa        60
     gaatatatat ttagccgatc atcaatctcc agtgagcgca ccactgttaa gttaacagat       120
     gtcaaaaata gctgtttaat agcgattagc gagtgttttt gcaagttgaa aagaacaatt       180
     caaggagatt ttttacaatg gattcaaatc agtgagttat gtagtatata tttctgactt       240
     tgaactgtag gaatggtcct tatattttgt gtaattaata atcgtttaac gagtatcatt       300
     ttgtgaccaa aatgagtttt tgaggaggcc tatacaatga gtgcaaccta ttccaaccat       360
     aagatttaat gcatattggg gaatattcaa atcatctcca tttaacactc aaagaggact       420
     tcatattgaa ttgttttaca gactgaacag ttgtggttgt tgttctgagg gcgatgaggg       480
     catcttatcg cttttgctat cgtttttaaa gaattggcga catcctaccg acatccggcg       540
     tacttttagt caccccaaaa tctacgcaga tattactggt attgatttaa agctgattca       600
     aaatcctggg actcttttga tgtgtcactc aagacaattg tcaacagata tggctaaatt       660
     gcaaaccgga gattattatg ggcgaatatc cttggctgac aatgactgca acagtgcaca       720
     aaatacttgt acactcaagt gatattagcg cgttattctt ttgagagaag gttccgaatg       780
     acggaataaa attcatgcag ttgagaagat aatttcacag aagtgttcca gaatgcacaa       840
     gctaacaacg gggaggggaa cagtagtaac agcagattag cagcagagta acggcagttc       900
     aacagcagtt caacagcagt tcaacagcag atcaacagca gacaaacagc agagtaacag       960
     cagatcaaca gcagatcaag agcagaataa cagcagttca acagcagatc aacagcagat      1020
     caacagcaga gcaacagaag atcaactgca gttacagcag cgtaacagca gcaacagcag      1080
     atcaagagcg gaataacagc agacaaacag cagatcaaca gcagatcaag agcggaataa      1140
     cagcagagta acagaagatc ggcagtggag taacagcaga taaacagcaa cggcagaagg      1200
     agagcagaag aaagcagtcg caaaaagaga atcgcagcag ccagaagtaa ctttcagcgg      1260
     cagcggcagc agcagcacga atcagcagag atcaagccgt gatgtgaaaa cctattgctc      1320
     ttgcaattac cagacttgca tctaaataaa attcatgcct attcttgaca gggcgcttgc      1380
     aagtgcaaag aaaaagtccc tcgttactgg gagggaaagt ttagtcaaaa atttagatgc      1440
     gttttcgcct taaaaaaaaa gagttcccct tcaaaaacga aaaacaaaat attgtttcgc      1500
     ttggaagtta ttaattgcca caaaaagtgg caacatttcc cagggtg                    1547
//
ID   TransibN4_DP repbase;    DNA;    INV; 400 BP.
XX
AC   AADE01000519;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   TransibN4_DP is a nonautonomous DNA transposon - a fossilized
DE   copy.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; TransibN4_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-400
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   GenBank; AADE01000519; Positions   45354   45753.
XX
CC   TransibN4_DP belongs to the TRANSIB family of DNA transposons.
CC   This element is characterized by the CACTG target site
CC   duplications.
CC   TransibN4_DP has imperfect 36-bp terminal inverted repeats (6
CC   mismatches).
XX
SQ   Sequence 400 BP; 140 A; 64 C; 82 G; 114 T; 0 other;
     cactatggga aattgtgaca ctttttgtgg ccaaaaaagt ctttaaaata ataggtttta        60
     agccgataaa caatacatac aagaaattgt aacagagcgc gccactgttt agtgaacagc       120
     tgacaaaaaa cagctgtttt ctagcagtgc taaagcagcg gttgtacaat agattcaaat       180
     cagagaggta ttaaacatgt atctgtgacg ttgaactgta gaactgtggg ccttatatgc       240
     ggtgcaattg ttaacgagta aaattttgtg acgaaaatta gtatttgaag tagcccaaaa       300
     aagtgggttc accccaaaag aatttcctct tgcaaaaaat gtcgtttcac ctggaaatga       360
     ttaattattg ccacagaaag tgttgaaatt tcccatagtg                             400
//
ID   TransibN5_DP repbase;    DNA;    INV; 1468 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   TransibN5_DP is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; TransibN5_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-1468
RA   Kapitonov V.V. and Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biol 3(6),  (2005).
XX
DR   [1] (Consensus)
XX
CC   TransibN5_DP belongs to the TRANSIB family of DNA transposons.
CC   This element is characterized by 5-bp target site duplications.
CC   TransibN5_DP has imperfect 37-bp terminal inverted repeats (3
CC   mismatches). The consensus sequences was built from 2 copies
CC   95% identical to each other.
XX
SQ   Sequence 1468 BP; 496 A; 226 C; 262 G; 484 T; 0 other;
     cactgtgggc cagcgacccc atttttcgac gttaattcga aaaaatgcat gtcaatgaaa        60
     cttaatttta attttacatt taattagtat atacattaat taaaaaaaat caaaaatctt       120
     ttttgtttta atgcatcttt ggcctttttg caatgtttta aagtcagctg tttgataacc       180
     tgcaatcgat agtaaaaaac gctggaaact gtttgtttac tttgagagct taccaaattg       240
     aaactaagtt caaaaactga aatcaaatta atggaaaaga aaggccaggg tatgtagagt       300
     ttttatatta aacacatttg tgctcatgtt tttgaatatg tttttgtttt tattaatttg       360
     tgtcgtccaa aggtagagaa tacttaacca atgtgcccgt ctcttatggt caataactaa       420
     ttttgtgcgc aattgtgcga gaaagtaatt atgtaatatt gtagtgcaaa ctgtgtataa       480
     aataatccta aaactcgttt ttgcgccatt ttgcgccggt gtgcgtattt taatttattt       540
     gtaggtgagg tggagttcac ttatgaaaag ctgctcagta tttacattga gaataatcga       600
     agcgccgcag cactttcgag ttggattttc gaagaactga aggcatacaa aataagcacg       660
     gagaaaaagt atttggcaaa atgcgggaga agcatttaag aaaaagcata actcatcgct       720
     tttgtccaag atggttatca aagttgaaag aacgtcgtca tcgaattcca tgacttcaac       780
     atcaagatca gttggacgcc caccaattga atatgtaaat gctggacccc gttgaaagac       840
     acatttctta ctccgagaaa ccccaatacg gtaaagaaaa atctttttac cgtaaaaaat       900
     gagtcggtaa cactaacggc ggatgaggct ttagcatatc tgcttgaaaa ttcattaact       960
     aaaagccaat ataacaactt tcgcaatctc agcaatagca aatcgtgtga tcttcttcca      1020
     gcttacaaca aagtaagaga aaatattttt tataacaata atgcttccct agaaactgat      1080
     acttattctg gtatgtgtga aagtgacgaa tcggattacg ataatgaaaa ttcattttca      1140
     atagaaatgg atgtgggaga agattaatta taaattcgtt gtactttgaa aaacttcaac      1200
     attcatcccc ctctaagtat taagtttaag tgtaaaaatt ttacttttta agaattttaa      1260
     taacatattc tattataatg gactacgtgt taaaaatcaa tattagcgaa tcttttcttt      1320
     tatgggcgtt tggtgtgggc gtggtcggat cggtctaaaa ttaagatata tatatataca      1380
     cgtcgataat attttgtgta caaaatttga agtctctagc tttattattt taatttacgt      1440
     caaaaaatgg gatcgctggc ccacagtg                                         1468
//
ID   TRANSPAC_I  repbase;    DNA;    INV; 4590 BP.
XX
AC   .
XX
DT   24-APR-2000 (Rel. 5.03, Created)
DT   14-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   TRANSPAC_I is an internal portion of the TRANSPAC LTR
DE   retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; gag; pol;
KW   Gypsy superfamily; internal portion; TRANSPAC_I; TRANSPAC_LTR.
XX
NM   TRANSPAC_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4590
RA   Long D.A.;
RT   "Transpac: a new transposable element in Drosophila
RT   melanogaster.";
RL   Unpublished.
XX
DR   [1] (Consensus)
XX
CC   The region 668-1603 encodes gag; 1726-4839 encodes pol.
XX
FH   Key           Location/Qualifiers
FT   CDS           338..1270
FT                 /product="TRANSPAC_I_1p"
FT                 /translation="MNENSLAAFNSTMNCIKLIQNFDGTDTNQLPDLITQI
FT                 ENILPSFDVFDTNTKNILFGFIKNKFVGLCRPVIHRHGNMTEWESFKRVIL
FT                 KNFGEKETSDVLMDMLKLCRVESTIEEYYNKINEISNRVHNRILIHDDKTY
FT                 TTLEVNRIALRVFRDNLPEPTKTLIFARNPNSVEDAYKIIEDARHQSYTLY
FT                 GPIRRNNRYNKPNFRTNFSNDNRNVNEPVVTERSLDEANRFQQNNVEQQEN
FT                 SRTEGTPRVNNRRQGYQYQSNNSSTSNSARVSTNSRNVQSSEQSRRSFEPM
FT                 DINQSSVNFQIEDQDEYHI"
FT   CDS           1222..4506
FT                 /product="TRANSPAC_I_2p"
FT                 /translation="SIKCKFSDRGSRRIPYIEVQGKKRPLLFIIDTGAEFS
FT                 VINDNLCHPKWKTDIDIEVKAMGNKIKIRKLCRFPCFQEFEAEGYICEFLE
FT                 YNFHNYFDGLIGCNILNDLHAVIDYSNKKIQLNNVYLDLLVQENHLDLGIH
FT                 NLIPMNLICPQARSSINELIQKFEHIFYKEGQDLSFTSEIKHRIITKNDLP
FT                 IYSKTYKYPEIHKDEVNRQIAEMLDQGIIRHSKSPYNSPLWVVQKKMDQSN
FT                 KQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLGDCKIFSTLDLAKGFYQ
FT                 IEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNILSPYTGQF
FT                 CIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFL
FT                 GHTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKI
FT                 AQPLIKYLKKNSKINTHDQXYVEAFQKLKILITSDPIVVYPDFNKQFTIVT
FT                 DASNYALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAIYWSTKFFKY
FT                 YIYGRKFIIKTDHRPLVWLNNLKEPNLKLQRWKVQLNEFDFDITFIKGKEN
FT                 ALADGLSRIVKASTEEYDKNAQTNIEINNLDIFMLENTNTLPEVTPKTKII
FT                 NEDFSKDLIHIFANDIDDLETIHSADSDDLNFISITTNCLNVFKIQIQIIE
FT                 AESDLSTFKILHNKKIRHIFKSSGNQENMLKFMQEKLPEKGLVVIFCENLS
FT                 LFVKFQEIYRQYFSSNKNLRILKSGTLLEDINDKEKLLKIIENEHIKNNHR
FT                 GINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDRQPIKYNFNITET
FT                 PDKINDIIHIDIWYPKRNIMYVTSIDKMSKYATAQHIKDRSWISLLNAIKL
FT                 RIQYLGKPKKIVTDNEFDIVVIKQFLLENNIDIHFTTPYKKTGNSDVERLH
FT                 LTLNEHMRLYNADPNNFDTIQENVYKAIVCYNNTIHSTTNIRPIDLFNNIL
FT                 CHEDISKLSEKLVRNKQTLNAKQDNINESNFSNIFVKNNQVGKSNPKYKEI
FT                 SNYTQYGNYLINNKDNKRKIYKDQVKRKYKYQNEDCET"
XX
SQ   Sequence 4590 BP; 1858 A; 755 C; 716 G; 1255 T; 6 other;
     ggcgacgagg atcaacacag aaaaaataag gaaaccagcc atacgtcaag aaattcattc        60
     ngaaccacag tnagctgntn ttatgtaatt taagtccgga aatcttcaat acgttaacca       120
     atgcacgtgg ccgagtataa agaggaacat aaaacataac tggaaagctt tggaacacct       180
     gcatgtacgg agtgacgaaa cccaacctgg agaagaagaa cttaagctga taaaattttt       240
     tttttcttcg acaaagctct ttatactagc taagataaga aactaaaagc taactattaa       300
     tacttgcgaa cctcgagaga aaacaaagaa atctaaaatg aacgaaaata gcttagccgc       360
     atttaactca acaatgaact gcatcaagtt aatacaaaat tttgatggta ctgatacaaa       420
     tcaattgcca gatttaatta cacaaataga aaatatcctt ccttcttttg atgttttcga       480
     cacgaataca aaaaatattt tgtttggctt tataaaaaat aaatttgtgg gattatgcag       540
     gccagtgatt cataggcatg gaaatatgac agagtgggaa agttttaaac gtgtaattct       600
     gaaaaatttc ggggaaaaag aaacaagcga tgtcttaatg gatatgttaa aattgtgtcg       660
     agtggaatca actatagaag aatattataa caaaattaat gaaatttcga atagggtaca       720
     caaccggata ctgatccatg acgacaaaac atacaccaca ttagaagtga accgaattgc       780
     actccgcgtt tttagagaca acttgcctga acctacaaaa acgttaatat tcgcgagaaa       840
     cccaaattcc gtagaggatg cctataaaat cattgaagat gctcggcatc aaagctacac       900
     attatacgga ccaattcgaa gaaataatag gtacaataaa cccaacttca gaaccaattt       960
     cagtaatgat aatagaaatg taaacgaacc agtcgttaca gaaagaagcc ttgatgaagc      1020
     caataggttt caacaaaata atgttgaaca acaagaaaat tcaagaactg aaggtacgcc      1080
     tagggtaaat aatagaaggc agggatatca atatcaatcg aataatagct caacttctaa      1140
     ttctgctcga gtctcaacaa atagtcgaaa tgtgcaaagc tctgagcaaa gcaggcgtag      1200
     tttcgagcca atggatatta atcaatcaag tgtaaatttt cagatagagg atcaagacga      1260
     ataccatata tagaagttca aggtaaaaag aggccattat tatttattat tgacactgga      1320
     gcagaattca gtgtaataaa tgataatttg tgtcacccga agtggaaaac agacattgac      1380
     atagaagtaa aagcaatggg aaacaaaatt aaaataagaa aattatgcag gtttccatgt      1440
     tttcaagaat ttgaagctga aggttatatt tgtgaatttc tagagtataa ttttcacaac      1500
     tatttcgatg ggctaattgg ctgtaacata cttaatgact tgcatgcagt catcgattac      1560
     tcaaacaaaa agattcaact caataatgtt tatttagatc ttttagttca ggaaaaccac      1620
     ttggatcttg gcatacataa cttaattcca atgaacttaa tttgtccaca ggccagatcc      1680
     tcaataaatg agcttataca aaaattcgaa catatttttt acaaagaagg ccaagaccta      1740
     agtttcacaa gtgaaatcaa acacaggatt attacaaaga atgatcttcc catttattcg      1800
     aaaacataca aatacccaga aattcacaaa gacgaagtta accggcaaat agcagaaatg      1860
     ttagatcaag gaattataag acactctaaa agcccatata atagtccttt gtgggttgtt      1920
     cagaaaaaaa tggaccagtc caataagcaa aagtggcggc tcgtcgtaga ctaccgtaaa      1980
     cttaataagg aaaccattga agatcgattc ccgatcccaa atatagacga gattttcgac      2040
     aaattgggcg actgtaaaat tttttcaact ttagaccttg caaaaggttt ctatcagata      2100
     gaaatggaca acaaagatgt gcacaaaaca gccttttcaa caaccagtgg ccattacgag      2160
     ttccttcgta tgcctttcgg actacggaac gcaccttcaa catttcaaag gctaatgaat      2220
     aatatcctta gcccctatac cggacaattt tgcattgttt acatggatga catccttata      2280
     ttttctaaga atatagggga acacgtcaat catttaagct gtatcttcag ctgtctatct      2340
     aaggcaaatt taaaactcca atcagacaaa tgcgagtttg ccagagagga gattgaattt      2400
     ctcggacata ccattaattc agaaggtcta aagccaagtc agaagaaaat tgacgcaatt      2460
     tgtaagataa atttaccgac aaaccagaaa caaattaaaa gttttctagg catcacaggt      2520
     tatttgaggc gctacataaa agactactcc aaaattgccc agcccttaat aaaatactta      2580
     aagaaaaatt ctaaaataaa cacacatgat caanaatacg tagaagcttt tcaaaaacta      2640
     aaaatcctaa taacaagcga tccgatagtc gtttacccag attttaacaa acaattcacg      2700
     atagttacag acgcaagtaa ctatgcatta ggcgccgtgc tcatgcaaga taataaagta      2760
     atttcttatg ctagtcgttc tcttaaaaat catgaactta attacagtac aatagaaaaa      2820
     gagcttcttg caatctattg gtcaacaaaa ttctttaaat attatattta tggaagaaag      2880
     tttataatta aaaccgacca tagaccccta gtttggctta ataatctaaa ggaacccaac      2940
     ctaaagttac aacgttggaa agtgcaatta aacgagtttg attttgacat aacatttata      3000
     aaaggtaaag aaaacgcttt agcagacgga cttagcagaa ttgtcaaagc atcaacagaa      3060
     gagtatgata aaaatgccca aacaaatata gaaattaata acttagatat atttatgcta      3120
     gagaacacta acacattacc ggaagttacg cctaagacaa aaattataaa tgaagatttc      3180
     tcgaaagatc taattcatat atttgccaac gatattgacg atttggaaac tattcacagt      3240
     gcggactcag acgatcttaa ttttattagt attacaacta attgtctaaa cgtttttaaa      3300
     atccaaatac aaataataga agcggaaagc gatttaagta ccttcaaaat tttgcataac      3360
     aagaaaatac gacatatctt taaatcaagc ggaaatcagg aaaatatgct taagttcatg      3420
     caagagaaac tgccagaaaa aggcttagtt gtaatatttt gtgaaaattt aagtttattt      3480
     gtaaaatttc aagaaattta taggcagtat ttttcaagta ataaaaattt aagaattcta      3540
     aagtcaggta cattgttaga agacataaat gataaagaaa aactcctgaa gattatcgaa      3600
     aacgaacaca taaagaataa tcacagaggc attaacgaaa tttttatatc tataagagaa      3660
     aaatactatt atccaaaaat gcaaaagttt attcaaaatt atattaacaa ttgtaaaatt      3720
     tgtaatttag ccaaatatga tagacaacct ataaaatata attttaatat tacagaaacg      3780
     ccagataaaa taaacgatat aattcacata gacatctggt atcctaaaag aaacattatg      3840
     tacgttacat caattgacaa aatgtctaaa tatgccactg ctcaacatat taaagacaga      3900
     tcttggattt ctttgcttaa cgcaatcaaa ttaagaattc aatacttagg aaagcctaaa      3960
     aagattgtaa ctgataacga attcgatatt gtcgtaatta agcaatttct cctcgaaaat      4020
     aacatagata tacactttac aactccttat aagaaaactg gaaactctga tgtggaaaga      4080
     ttgcacttaa ccctaaatga acatatgcga ttgtataatg ctgatccaaa caattttgac      4140
     actattcaag aaaatgttta taaagcaatt gtttgctata ataacacaat tcattcaacc      4200
     acaaatatta gaccgataga tttatttaat aatatacttt gtcacgaaga catctctaaa      4260
     ctatccgaaa agctagtaag aaacaaacaa actttaaatg caaaacagga taacataaac      4320
     gagtcaaact tctcaaatat atttgtaaaa aataatcaag taggaaaatc aaatccaaaa      4380
     tataaagaaa taagtaatta cactcaatac ggtaactact tgattaataa taaagacaat      4440
     aaacgaaaaa tctataagga tcaggtgaaa cggaaatata aatatcaaaa tgaagattgt      4500
     gaaacctaac atttctgtac tcctattatt tacatatgta ttacctaatg aaataatttc      4560
     aaccacatac ttgaaactta ngctggggga                                       4590
//
ID   TRANSPAC_LTR repbase;    DNA;    INV; 330 BP.
XX
AC   AF222049;
XX
DT   24-APR-2000 (Rel. 5.03, Created)
DT   24-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   TRANSPAC_LTR is a long terminal repeat from the TRANSPAC
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; TRANSPAC_I;
KW   TRANSPAC_LTR; gag; pol.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-330
RA   Long D.A.;
RT   "Transpac: a new transposable element in Drosophila
RT   melanogaster.";
RL   Unpublished.
XX
DR   GenBank; AF222049; Positions       1     330.
XX
SQ   Sequence 330 BP; 94 A; 75 C; 58 G; 103 T; 0 other;
     agtcatgtat acccttacat accctcttat tagattaagt tatgttagaa tacacatggc        60
     gctaagcttt ttgtctgagc ttagctttat ttttagtcag tagataagaa gacctcgatc       120
     tgtacacatc attgaataaa ccctcaattt gttaagcgaa acctttcgtt ttgttttaac       180
     ccctctttaa tcgacaaaga agtcgatggg tgcttaactg aggagttcaa ccttcaacct       240
     acagacgaca acgaagtcgt ttctggaggc aacgatcttt tggacacaac ggtctctgct       300
     cggaaggccc tatcaacctt ccacataact                                        330
//
ID   TRAS-1_HMM  repbase;    DNA;    INV; 3005 BP.
XX
AC   .
XX
DT   04-SEP-2012 (Rel. 19.03, Created)
DT   05-FEB-2014 (Rel. 19.03, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Heliconius melpomene
DE   melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RG   The Heliconius Genome Consortium;
RT   "Butterfly genome reveals promiscuous exchange of mimicry
RT   adaptations among species.";
RL   Nature 487(7405), 94-98 (2012).
XX
RN   [2]
RP   1-3005
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 776-776 (2014).
XX
DR   [2] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   Partial sequence. Only three copies are found in the sequenced
CC   genome. One copy follows (CCTAA)nCC.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..3002
FT                 /product="TRAS-1_HMM_1p"
FT                 /note="reverse transcriptase and ribonuclease H."
FT                 /translation="EDPGVEGRGWSHQLGPQHXXFQCASEGAENQKASQNH
FT                 TGLQHKKADWNXFRXELNKNLXENDLNLAEVNKINNTXILENKIQNYTEXI
FT                 XLACLKXIPAKTXRSTVKLPWWCDELDRLRRDVRXKKRRVSXAAPRRRPHV
FT                 XKEYLXAXNLYEAEAVAAQTSSWKRYCSTQDRETMWDGIYRVIRHSQERHE
FT                 DQPLVRNSVTLTPQESVEYLAXTFFPEDDLXADXXSHKATRRTAEAVXLXS
FT                 EVNTPNDPPFTGDELXHALSRSNPKKAPGGDGFTADIVRQAAGVDPEXLLS
FT                 LLNKCLELSCFPEPWKEAVVVVLRKPGKDDYTLPKSYRPIGLLXVLGKVLE
FT                 RMMVRRIRWHVLPKANRRQYGFVPQRSTEDALYDLARHLRDGVKNKLLNLV
FT                 ISLDIEGAFDAAWWPAIRCQLAXKGCPLNXRKLVDDYLQNRKVTVRYADHX
FT                 HTMXTTKGCIQXSISGPTFWNLLLDPLLNXITARGVYCQAFADDIVLVISA
FT                 NSGSQISRTADQILSHVYEWGIDNKLKFAPSKTFAMMVTNKLKYDAPSVHM
FT                 GGMPIKLVXEIKILGLTIDKKLTFNNHISKTCRKALNLYKIVSRSAKLNWG
FT                 LNPEIIRTIYVAVIEPIILYAASVWAPEASKISTRKCLDAVQRGFAQKIAK
FT                 SYRTVSLSAALALSGLIPLDMRVREAALLYEAKRGKPQDILRGRXVEKRMD
FT                 FDQLPHPSEEQGVQFGCLEDLEPETVDEHNLRGMIIYTDGSKIGGGVGAAL
FT                 SCWKGEAEILARKYVLASFCTVFQAELYALYQATKVALGSSEQSACILSDS
FT                 RSALELLGDQDASHPMVFFIKENLRRANERNKKVRLFWVRAHVGIQGNERA
FT                 DELAKCAASNTKKAPDYDECPISFIKKTIRANTIEEWDRRYREGETGKTTK
FT                 VFLPNIHAAFNFIKKNNPNQTITQALTGHGGFGEYLARFKLKDHPGCRCDS
FT                 ARDETSLHLILDCPIFSKARLDTETYMDEKICEQTIPDIMLDKQK"
XX
SQ   Sequence 3005 BP; 882 A; 722 C; 788 G; 556 T; 57 other;
     gggaagatcc aggggtggaa ggtagaggat ggagtcacca gctcggacca caacaccawt        60
     kctttcaatg tgcttctgaa ggagccgaaa accaaaaggc cagccaaaac cacacgggtc       120
     tacaacacaa aaaagcmgat tggaatamat ttagaktaga gcttaacaaa aatttggmag       180
     aaaacgattt aaatttggcw gaagttaaca aaataaacaa caccamaatw ctagaaaaca       240
     aaattcaaaa ttacacagaa kcgatcawgt tggcatgctt aaaawccata ccggcaaaaa       300
     ccttmagaag cacagtgaaa ctgccgtggt ggtgtgacga actggaccga ctgaggaggg       360
     atgtsaggwc gaaaaagaga agggtttccw cagcagcacc tcgcaggaga ccgcacgtcs       420
     tgaaggagta cctggakgca aawaacctst acgaagcaga agccgtagct gcgcagacca       480
     gcagctggaa gaggtactgc agtactcagg accgkgagac tatgtgggac ggwatataca       540
     gagtgatcag acactcccag gagaggcacg aggatcagcc cctggtgaga aacagcgtaa       600
     ccctcacccc acaggagtcg gtcgagtacc tggcgsagac cttcttcccc gaggacgacc       660
     ttagwgcgga twcggawagc cacaaggcga cacggcggac agcagaggca gtcaamcttc       720
     wctcggaggt gaacaccccg aacgaccccc cgttcactgg cgacgagctc aascacgccc       780
     tgtcmagatc gaaccccaaa aaggcgccag gaggmgacgg ctttacmgct gacatcgtca       840
     ggcaggcagc gggggtggac ccggaackgc tcctktccct tctgaacaag tgcctggagc       900
     tatcatgctt tccagaaccc tggaaggagg ctgtggttgt cgttcttcgg aaacccggga       960
     aggacgacta caccctcccg aaatcgtaca ggccaatmgg cctgttatmg gttctcggca      1020
     aggttctgga gagaatgatg gtccgccgca tcaggtggca tgtgcttccg aaggcgaata      1080
     ggagacagta cgggttcgtc cctcagcgca gcaccgagga cgcsctgtat gatctggcga      1140
     gacacttaag ggatggcgtc aaaaacaagc tattaaacct kgtgatctcg ctagacatag      1200
     agggcgcctt cgatgcggcg tggtggccag ccatamggtg tcagctagcc gamaaggggt      1260
     gcccmttaaa cmtacgmaag ctwgtggacg actacctgca aaacaggaag gtaacwgtka      1320
     gatacgccga ccacsaacac acaatgmtca ccacgaaggg ctgcatwcaa sgctccataa      1380
     gcggaccaac sttttggaat ctcctgctag acccactcct caatsagata acggcgcgcg      1440
     gggtctattg ccaggcwttt gcggacgaca tcgtcctggt gatatcggcc aattcaggtt      1500
     cccaaatttc tcggacggca gatcaaatac tatcccatgt gtacgaatgg ggcatagaca      1560
     acaaactaaa gttcgcgccm agcaaaacst tcgcaatgat ggtcacgaac aaattaaaat      1620
     acgatgcccc ctccgtacac atgggaggta tgccaattaa actagtagak gaaattaaga      1680
     tattaggcct aacaattgac aaaaaattaa cttttaacaa tcacataagc aaaacctgta      1740
     gaaaagcact aaatttatac aaaattgttt ctcgatcagc aaaattaaac tggggcctga      1800
     atcccgaaat catcaggacg atttacgtgg cggtcattga gcccatcatc ctgtatgccg      1860
     caagcgtgtg ggcacctgaa gcgagcaaaa ttagtactcg caagtgcctg gacgccgttc      1920
     agagaggctt tgcccagaag attgcaaaat cttataggac ggtctctctg agcgccgccc      1980
     tggcgctcag cgggctaatc ccgctcgaca tgagggtgcg tgaagcggca cttctgtatg      2040
     aggcaaagcg cggcaagccg caggacatcc tgcgcggcag gmaagtggag aagaggatgg      2100
     acttcgacca gttgccgcac ccatcggagg aacaaggggt gcagttcggg tgcctcgagg      2160
     accttgaacc ggaaaccgtg gatgagcata acctcagggg gatgatcatc tacacggacg      2220
     gtagcaagat tggtggcggg gtaggagcgg cactttcgtg ctggaagggg gaggccgaaa      2280
     tactggccag aaagtacgtc ttggcgtcct tctgtacggt gtttcaggcc gaactctacg      2340
     cgctctacca ggccaccaag gttgcgttgg gttcctcgga gcagtcggcc tgcatcctaa      2400
     gcgactccag gtcggctctc gaactcctag gagaccagga tgcgtcccac ccaatggttt      2460
     tctttattaa agaaaaccta agaagagcta acgaaagaaa caaaaaagtt agactcttct      2520
     gggtaagggc gcatgttggg atccagggga acgagagagc ggacgaactg gcgaagtgtg      2580
     cggcctccaa cacgaaaaag gcgccggact atgacgagtg ccctatatcg tttattaaaa      2640
     aaacgataag ggcaaatacg attgaggagt gggataggag atatagggaa ggggaaaccg      2700
     gaaaaacgac taaagtattc ttgcccaaca tacatgcagc atttaacttt attaaaaaaa      2760
     ataacccaaa ccagactata acacaggcac tgacgggcca cggcggcttt ggagagtatc      2820
     tggcaaggtt taaactaaag gaccacccgg gatgcagatg cgattccgcg agagacgaaa      2880
     cttcacttca tctcatactc gattgcccga tattctccaa agcacgcctt gacaccgaaa      2940
     catatatgga cgaaaaaatt tgtgaacaga ctattcctga cattatgctt gataaacaaa      3000
     aatgc                                                                  3005
//
ID   TRAS-1_MSe  repbase;    DNA;    INV; 5104 BP.
XX
AC   .
XX
DT   31-AUG-2012 (Rel. 19.03, Created)
DT   05-FEB-2014 (Rel. 19.03, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS-1_MSe.
XX
OS   Manduca sexta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini;
OC   Manduca.
XX
RN   [1]
RP   1-5104
RA   Kojima K.K. and Jurka J.;
RT   "TRAS and SART, two telomeric repeat-specific non-LTR
RT   retrotransposon families from arthropods.";
RL   Repbase Reports 14(3), 777-777 (2014).
XX
DR   [1] (Consensus)
XX
CC   We report two groups of telomeric repeat-specific non-LTR
CC   retrotransposon families, TRAS and SART from various arthropods.
CC   TRAS was found from the red spider mite Tetranychus urticae
CC   (TRAS-1_TUr to TRAS-8_TUr), first time outside of insects. We
CC   also report TRAS from the tobacco hornworm Manduca sexta
CC   (TRAS-1_MSe) and the Postman butterfly Heliconius melpomene
CC   (TRAS-1_HMM), both belonging to Lepidoptera. They follow
CC   (CCTAA)nC of telomeric repeats. SART was found from the Argentine
CC   ant Linepithema humile (SART-1_LH), the Carpenter ant Camponotus
CC   floridanus (SART-1_CF), the pea aphid Acyrthosiphon pisum
CC   (SART-1_APi to SART-9_APi), the human louse Pediculus humanus
CC   (SART-1_PHu), and the predatory mite Metaseiulus occidentalis
CC   (SART-1_MOc to SART-5_MOc). We also report new SART sequences
CC   from the silkworm Bombyx mori (SARTBm3), the Postman butterfly
CC   Heliconius melpomene (SART-1_HMM and SART-1B_HMM), and the red
CC   flour beetle Tribolium castaneum ( SARTTc8). SART is almost
CC   always followed by AGG(TTAGG)n; some exceptions are followed by
CC   G(TTAGG)n.
CC   Now TRAS is found from 2 insect orders (Lepidoptera and
CC   Hemiptera), and 1 arachnid order (Acari). SART is found from 5
CC   insect orders (Lepidoptera, Coleoptera, Hymenoptera, Hemiptera,
CC   Phthiraptera) and 1 arachnid order (Acari). Many of these
CC   families are found as a single-copy sequence in the respective
CC   sequenced genomes, but considering the low coverage of telomeric
CC   regions, they are likely present as repetitive sequences. Most of
CC   single-copy sequences encode two intact proteins, likely due to
CC   rapid turnover. The strength of target specificity is different
CC   between families. Older families are more likely found outside of
CC   telomeric repeats. For example, copies of
CC   SART-1_PHu are 80-90% identical to their consensus sequence and
CC   most of them are not flanked with telomeric repeats.
CC   The most similar is TRAS1. One sequence (AIXA01003758) is
CC   followed by (CCTAA)n telomeric repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           173..994
FT                 /product="TRAS-1_MSe_1p"
FT                 /translation="MDKLKENTELLRENKRELDKISGIIAKEAEQRTYASV
FT                 AAVGPRQGQSLSAATALHSIVVKSKDEQETGDEVVEKIREVVNATEEGIRI
FT                 DRIRKAKERKVIIGCRDKEEIKKIKEKIVKAGDKLSVQEIENKDPLIILKD
FT                 VLNCHKDEDILRAIRRQNKNILDKIEKSEDRMEIRYRRRARNPLMMHVVVK
FT                 VSPQIWALTTEAGALHIDVQRVRVEDQSPWCSVQVSGVRPWEALLPGLSGR
FT                 VQSLRGPALKIGLSRLDGSSTADLLQLPKGKDG"
FT   CDS           1072..4158
FT                 /product="TRAS-1_MSe_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="LIAKVVSRAKSPAIQDTASDVRPYLVAQANLQRKALA
FT                 TQELISIATERRLAFALVQEPYVGATGRVKNYGTARIFQCAEREVGPVKAA
FT                 IVVFDQNMDALICPEFTTTNIVVVRIRTSAWEIVAVSCYFEPDRPVDKYLD
FT                 HLRAICQKLGSRRLLIGGDTNAKSLWWSQEIDRRGEEVSDWLDEAGLHVLN
FT                 EGTTPTFFTVRGDRAYSSQVDITACSDDLLGKIQSWHVEEDLTSSDHNTII
FT                 FGISLQKGNQILIKNTTRKYNTKKANWAEFRETLKNLGSFQKIKAETINKI
FT                 NNKDELEKIIGNYTDAIIKASDKSIPLKRINTKFTIPWWSKELDRSKSDMM
FT                 RKKRRIRWAAPVRKPKVIREFKEARAKYEEECKKAQTQSWKEFCGKQSKEG
FT                 LWDGIYRVMGRLTKRQEDQPLVRDGKTLGQEESARFLADTFYPGDPDEDDN
FT                 EDHRRTRELAARVNDRVHGEVHDPSFTMRELTAALVTFNPKKAPGSDGLTS
FT                 DICTQAISLDPESFLSLANKCLELAYFPKIWKEATVVVLRKPGREDYTAPK
FT                 AHRPIGLLPVMGKILEKMLVGRLKWHLIPRMCHRQFGFMPQRGTEDSLYVL
FT                 VNRIRTKLAEKRIILMISLDIEGAFDSAWWPAIKVRLAEEQCPPNIRRLVA
FT                 SYLDERSVKVRYAGAEAAKRTVKGCVQGSIGGPILWNLLLDPLLQGLERRG
FT                 DYCQAFADDVVLVFDGGSTGEVQRQANAALAYVRDWGIRNKLRFAPHKTMA
FT                 MVITNKMKYDTPILRMGGVDIGLSNEIKVLGLTIDRKLTFNSHVTQACRKA
FT                 AGLYKILARSAKVQWGLGPEVIRTIYTAAVEPVILYAASAWAPASQKLGIR
FT                 KQLGAIQRSFAQKLTKAYRTASLNSTLLLAGILPLDIRVRETALLYEVKRG
FT                 YSQRVVGDREIEAPVAFARLDHPAERRSGSFECLVDRAELARHVGEGLSIF
FT                 TDGSKIDGKVGAALSIWKGAAETSTRKLRLEPYCSVYQAELLALRKAVEEA
FT                 LHSGFPTCGIFSDARSALEVVTG"
XX
SQ   Sequence 5104 BP; 1629 A; 1081 C; 1440 G; 951 T; 3 other;
     atataacacg gaaagactat acaagctagt gaaagaagca gaggaaggga gagcttacaa        60
     gggaaaagag atacaaagga ctaggataga agaccaggag aaaagtgatg gagtggatgt       120
     cgttgttagg gawgaaagat cgaggaagga gagggaagag tgcaaagaaa taatggacaa       180
     gttaaaagag aacacagaac tactaagaga aaacaaaagg gaattggaca agataagcgg       240
     aattattgcg aaggaggccg aacaamgaac ctatgcgagt gtagckgcgg tcggtccgcg       300
     acaggggcaa tctctgagcg cggcgacggc gctgcactcc atagtcgtga agtcaaagga       360
     tgaacaggag acaggagacg aagtggtaga aaagataaga gaggtagtaa acgcaacaga       420
     ggagggaatc aggatagata gaatcagaaa agcaaaggaa agaaaagtaa ttataggatg       480
     ccgggataaa gaggagataa agaaaataaa agagaagata gtaaaagcag gagataaact       540
     aagcgtacag gaaatagaaa acaaggaccc actcatcatt ttgaaagacg tactgaactg       600
     tcacaaggac gaagacatac taagagcgat aagaagacaa aacaagaaca tattggacaa       660
     gatagagaag agtgaagacc ggatggaaat aagatatagg agaagagctc ggaacccgct       720
     gatgatgcat gtagtcgtta aagtgtcacc gcaaatttgg gcactcacca ctgaggccgg       780
     tgcgttgcac atagacgtcc agagggtccg ggtggaagac cagtccccct ggtgcagtgt       840
     tcaggtgtct ggggtacggc catgggaggc gcttctgccg ggcctctctg gacgtgtgca       900
     gtcactgcgg gggccagcac ttaagatcgg actgtcccga ctggatggca gcagcacagc       960
     cgacctgctg caactgccaa aaggcaaaga tggctgacac aagccataat gcattcagcc      1020
     gggactgtcc ggtcaggaag cgatgggaca cactggcgcg ctccgccata gcttattgct      1080
     aaggtggtct ccagagccaa gagcccggcg atacaagaca ccgcctccga cgtcaggcca      1140
     tacctggtgg cgcaggccaa cctgcaaaga aaagcgttag ctacacaaga acttatctcg      1200
     atagcaacag agagaaggtt ggccttcgcc ttagtccagg agccatacgt cggagcaacc      1260
     ggccgtgtaa agaactacgg gactgccagg atcttccagt gcgcggagcg ggaggtcgga      1320
     ccggtcaagg cagccatagt ggtctttgac caaaatatgg atgccttgat ctgtccggag      1380
     ttcaccacga ccaatatagt cgtggtgaga atccgcacca gcgcctggga aatcgtggcg      1440
     gtctcgtgtt acttcgaacc agaccggccg gttgacaagt accttgacca tctaagggca      1500
     atatgtcaga agctgggctc gaggcgccta ttgataggcg gagacaccaa cgcgaaaagc      1560
     ttatggtgga gccaggagat cgaccgaaga ggagaggagg tgtctgactg gctggacgaa      1620
     gccggactcc acgtgctgaa cgaaggcact acgccgacgt tcttcactgt cagaggagac      1680
     agggcatact ccagccaagt ggacatcacc gcctgttcgg acgatctact gggcaagatc      1740
     cagagctggc acgtcgagga ggacctgacg agctccgacc acaatacaat catctttgga      1800
     ataagtctgc aaaaagggaa tcaaattcta attaaaaaca caacaagaaa atataatacc      1860
     aaaaaagcaa actgggcaga atttagggaa acgttaaaaa atttaggaag ttttcagaaa      1920
     attaaagcag aaacaattaa taaaataaac aataaagacg agttggaaaa gataatagga      1980
     aattacacgg acgcaataat taaagcaagt gacaaatcta tacctctaaa aagaataaac      2040
     acaaaattta cgattccatg gtggtcaaag gagctcgaca ggtccaaatc ggacatgatg      2100
     cggaaaaagc gcaggatcag gtgggcagcg ccagtgagaa agccgaaggt catcagagaa      2160
     tttaaggagg caagagccaa gtatgaagag gaatgtaaga aagctcaaac acagagctgg      2220
     aaagagttct gtggcaaaca gagtaaggaa gggctatggg acggaattta tcgggtgatg      2280
     ggcaggctga caaagcgaca ggaagaccag ccactcgtca gggacgggaa aacactgggt      2340
     caggaggagt cggcaaggtt ccttgccgac accttctacc caggcgaccc ggacgaggat      2400
     gacaatgaag atcaccggcg caccagggag ctagctgcgc gcgtgaacga cagggtccat      2460
     ggtgaggtac atgacccatc gttcacgatg cgggagctca ctgcggcgct ggtgaccttc      2520
     aatccgaaaa aagcgcctgg ctcggacggt ctgacctccg acatctgtac gcaggcgatc      2580
     agtctagatc cagagtcttt cctatcgctg gccaacaagt gcctagaatt ggcctacttt      2640
     ccaaaaattt ggaaggaggc cacggtcgtt gtgcttcgga agccgggtcg tgaagactat      2700
     acggctccca aagcgcatcg gccgatagga ctgttgccag tgatgggaaa gatcctggaa      2760
     aagatgctgg tgggtaggct gaaatggcac ctcattccga ggatgtgcca ccgccaattc      2820
     ggattcatgc cacaaagggg caccgaggac tccctctatg tcttagtgaa cagaataaga      2880
     acaaagctcg cagaaaagag aatcatttta atgatatcac tagacataga gggagccttc      2940
     gatagcgcct ggtggccggc cataaaagtc cgattggcgg aagagcaatg cccaccaaac      3000
     atcagaagat tggtcgccag ctacttggat gagaggtcag ttaaggtccg gtatgcaggc      3060
     gccgaagctg cgaagcgtac tgttaagggt tgtgttcagg gatcgattgg agggccaatc      3120
     ctgtggaacc tcctcctcga ccccctattg caggggctag agcgccgggg cgactattgt      3180
     caagctttcg ctgacgatgt cgtcctggtg tttgatgggg gttccacagg agaagttcag      3240
     aggcaggcca atgcggcact agcctatgtg cgggactggg gtatccgaaa caaactcaga      3300
     tttgcgccac ataagaccat ggcaatggtt attaccaata aaatgaagta cgataccccg      3360
     atcctgcgca tgggcggagt cgacattggt ctgtcgaatg agattaaggt gcttggcctg      3420
     acaatcgacc ggaaattgac ctttaacagt cacgtgacgc aagcgtgcag gaaagcggct      3480
     ggtctctata aaatcctcgc aagatcagcc aaagtccagt ggggtctggg accggaagtg      3540
     atccggacga tttatacggc ggcggtagag cccgtaatcc tctacgcggc tagtgcgtgg      3600
     gcacccgcca gccaaaaatt agggattagg aaacagcttg gggccatcca acgtagcttc      3660
     gcacagaagc tgacaaaggc gtacaggacc gcctctctga actcgacgct gctgctcgcg      3720
     ggaatactcc ctctcgacat aagagtgagg gagacggcac tcttgtacga ggtcaagagg      3780
     gggtactctc agcgagtagt aggcgatcgg gaaatagagg cccctgtagc ctttgccaga      3840
     ttggaccacc cggcggagcg gagaagcggg agtttcgaat gcttggtgga tcgagcggaa      3900
     ttggcgcggc acgtcggtga aggtcttagt atcttcaccg acggcagcaa aatagatggg      3960
     aaggtcggag cggcgctgtc catttggaag ggcgccgccg agactagtac caggaaattg      4020
     cggctggagc catactgctc ggtctaccag gcggaactac tcgccctccg caaagccgtg      4080
     gaggaagcgc tccacagcgg gtttcctacg tgcggcatct ttagcgatgc taggtccgcc      4140
     ctggaagtcg tcacagggtg actccctcca ccccatagcg tttgacatta acggctgcta      4200
     aagaagcagc aaacgcaccc agaaaattaa atttctctgg gtgaaggcac atgtggggct      4260
     ggaggggaat gaaagggcgg atgagctcgc taaagcggcc gcactgcacc tgaagacccg      4320
     tgcgcactac ggtaaatgcc cggtttcatt cgtcaagagg gagatccgtc gggctctatt      4380
     ggcgaatgga gccggagata tgcggatgga gagacggctt cgacaacgaa gctgttcttt      4440
     ccagacgctg ccgaggcgca cagggtcgtc aggaagatcg atccggatcc agtcctgacg      4500
     caggtgttca ctgggcacgg cggcttctcc gattacttgt accgattcaa gtgcaaggag      4560
     agtccggcgt gcctatgtga ccctgatgtt cgggagacgg tcccgcacct actcaccgag      4620
     tgtcccatac atgccacgga gaggtatgac ttagaaaata ggttagactt aaaaataacc      4680
     gtaggtaatt tagataagat agttaaaaat aagatacata cacatatatt tataaaatat      4740
     tgcataagaa tagcaaataa ggtagtaaaa agaaatagta actaaaaatt gctaaatata      4800
     taatatgata ttatgtattt atagtaataa attagaagta aacaaataga aaatatatgt      4860
     ataattaaga taaatagaaa taagtataga taaatataat atagataaat aagataagta      4920
     atataagaca catagaaata agtaataaat gtgagagaaa agaataaaag aaaaagataa      4980
     aataaaagat gacaaaacat agaaaaacag agaaaataaa agaaaaaaga caaaaaataa      5040
     ataaataatg aaaaatccct tgtcctcgat agggggaact agaaattaaa aaaaaaaaaa      5100
     aaaa                                                                   5104
//
ID   TRAS-1_PXu  repbase;    DNA;    INV; 4872 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-4872
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3097-3097 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~88% identical to consensus. The 5' end is flanked by (TAACC)n
CC   telomeric repeats.
XX
SQ   Sequence 4872 BP; 1674 A; 881 C; 1111 G; 1141 T; 65 other;
     gagtcacgct ccgcgccccg taccggtacg acacgccaga agttgwaaaa actgttwtaa        60
     agtcgctccg caagtgaaaa agttggtaaa attcgaagtt gtgggaaaag tttcgcaaac       120
     atacccgtgt gatacatcac cgggtgcgga aaattgcccc ctttccgacg gtkccaaact       180
     cgaggaggaa aaccgaagac ctggactcct ggaacagaaa aacatcaaaw ttcaaaattt       240
     ttacaacttc aaaaaataac gctgcgagat ctagatcgag aacatataca ttttttgaca       300
     ccatcggata gatctcgccg agatctttga ccctgaccca tttccggaat ttttcccgtg       360
     ggaaaaaccg gaaawaacac tgaaaaacaa aaaccgcgtg gccacgaggt cctggatccg       420
     ggagtgctga agagccgtga catagtgtwt taagtagaca atcaagtgcc gaaaaagaca       480
     gtgtttttag attttaattt ggacwagtak tttaggagtt tttaagccgg aaagtttgtg       540
     caaaaagtga castttttca aaaaatcgta actttagttt ttaagcgagg acatattgtt       600
     tttattttat tagtggatas ggcttaaaag gacgaacaww ttgatacccc gcttggattt       660
     ttcggacttg taawttcggt gcaattgctt tttgaaaacg gacatatttt tagaaaaact       720
     ttaagtgttt gttagagacc ctaagtgtta attaagtgta gtttttatag tgtaggacat       780
     attttttaag tgccgtgaac aatatagacc aaaaaacggt tcgaaaaagc gattatttag       840
     ggtacctaaa tttgaaatca aattacgtaa actcggatcg aaaacgcgta aacaagttag       900
     tcatcgcgca gctgcaccgc tcgcacgccg tcgccgccga tcctactgcg gcgccaacat       960
     tcctgactgg cgccgggtgg cgcccgcgtt aattgccgcc ggcgcttaat ngcttgacgc      1020
     cggcgcttat cgagtttccc acgctcctca ttagcataca atatcgatat cggagcgtgg      1080
     agaagtaggt cagtagttta taggtttata ggttaacgac ttgacgactt tgttattgtn      1140
     ttcnacttag tcattttatt tgttttattt aantttttaa atttgttttt taacttttta      1200
     ttattattag tnttacttta aaatagacan nctgtgatat agttctaaga gttttaagcc      1260
     tagntgataa gttaattgta aattctattt tattattgtt tttgaggttt taaatttttt      1320
     gaagattttt atatttttaa ttatttttaa ctttttaaat tttaaatttt naatttttaa      1380
     attttaaatt ggtttccgga attccaggga attttggatt ttttggattt ttaaacttga      1440
     ctttgaaaaa tttttaaatt tttaaatttt ttatttttag tctttaacaa tattttacat      1500
     tttaacattt tacacttttg ggagttggng ggnntnnnng nnnttnngat tntnntnnnn      1560
     ttnnnnnnnt tnnttnttnn nnnattattn nattttttat tcattttatt tttacttttt      1620
     atttnatttt aactnggcta acacttagag ctgtaaatag ataggaaaac tagtcaagtc      1680
     gaatttagcc gacggacata ttgactgggc ttattgccgg caatattagt tttaagtagt      1740
     attagcatta ttgacggggt tattaccctc agtaattagt tttagttata cacacactga      1800
     gcgggttatt gcccccagtg ttaggttaag ttaggtgtga cggggtttat tgacccaaat      1860
     caggacacgt tggggtcttt tgacccagaa ttataaaatt aaattaaata ttatactcac      1920
     ccctgacaca cctcaagatg ttcggcctca gaacgcccga caggaaggtc gaccgcgccg      1980
     cagcctcaca ccgtgaccgg gcaccctcac cgcggagtga ctcmtcgcct gaaaacacct      2040
     ctaatgtaag aaggagtatc ggcgactggg aactaggaag agcggaagca aaagagattc      2100
     cactcgcatc cgcactccgg aaaagacaaa agkgccagta aagagaatag tatttaccaa      2160
     agacacaaaa gcggtgaccc gaaaagactc aacagacctc acagactcga caagtccccc      2220
     aaaatacgcc acgaagttgg cagaggcaag ggcgtgtgtg acgaaggcca aggtaaatct      2280
     tggcctwtcc agaaacacaa agacagaaat aaaagaggca gtgacgcaag cggtcgacag      2340
     gctgtatcaa ataattaagg aattagaaag taaagagaag aaggcagcag aggagaaaac      2400
     gacagatggt acggaaaaga gaaaggaaca gactaaggaa tgtgctgaac tagtggataa      2460
     aatcgacaat catgcaaaat taataaggaa aacagtgcga aaatgcaaga attacagaac      2520
     actctggaaa aataccatgg cagacaagaa aaacagcagc agcaatacac gtatgctagg      2580
     gcagtaatgc aggasaggaa aagccctaca caacagaagt cgttgctctc agtagtgata      2640
     acatcaaagg acgagatgga aacaggagag gaagtgttgg agagaataag gaaagcggtt      2700
     agagcaaaag aaggcggcat agcagtagag aatatcagga aggcaaaaga caggaagatc      2760
     atagtaggat gtaggacgga ggaggaaaga aggcaactaa aggaaagact aaggagcgca      2820
     gaagaacacc tgaacgtgca ggagataaag aataaagacc ctctgatcat cctgctaaat      2880
     gtcttcaagt ataactcgat gaagacatta ttgccgcact aaagaaccaa aacaagggag      2940
     tgctgagcga ggaaacgaca aggaggagaa gctagaaata gcatacaaaa agagggcgag      3000
     aaatccacta acacagcacg tagtgatgag agtcaacccg cagacctgga gaaaactgac      3060
     cgatgcaggc aaagtccaaa tcgacctaca aagagtcaga gtcgaagacc agtcgcctct      3120
     cgttacaatg ttcgcwctgt ttgggatatg gacatcccaa acggctatgc aaggaaacgg      3180
     ccgaaaaatg tagccactgc ggggggcctc ataaaaagag cgaatgcgaa gactggaagg      3240
     caggctcaga gccatcatgc tgcaattgca aactagcgaa gatggacaag gcggaccaca      3300
     acgcgttcag ccaggagtgc ccggtgcggg agcgatggga ttcgatagcg agatcctcaa      3360
     tctcatactg ctaaaggcgc cccgggcact cagggctgga cggttggcag agctcaacga      3420
     tatcgcgctc ttcaaaccga accggggaca gagagtgtgg tattgggggg ggatgccaac      3480
     acccggaacg gctggtgggg gggtcgaaga gtagaaaaga ggggtaacat caactcggac      3540
     cacaaggcga tcccagttaa cataaaattc aaaaagcatc aaggagaaga tatcaacgac      3600
     tattagaaat taaaaaaggt taactgggag tattttggaa aaatttaaca aaggtttgga      3660
     atgaaaacaa aattaaaatt aacaacgtaa atggaattaa aaatagaaaa atttggaaaa      3720
     gctattcaaa attacacaaa agtaacacag aaaatttggg aagaaaattg taaaaaggat      3780
     tttaaaaata aaaataaaga ataaacttac cttgttggtg gaccgaagac ctcaccgccg      3840
     ggcgaaggga ggtcccacgt gctgcgccgg ccgggggggg acgggtcgtc gtgcagcatc      3900
     tgaaatcaaa aaagagaaag agtcaaaaaa ccagcttctg tggacgacgg aacagggggt      3960
     cgacgtggga cgggttgtgt cgaatgacga gctgcacgac gagcggacat gaggaccttc      4020
     ccatcatgga agatggggag gcctcagacc ctggaaacaa atacgccgaa gacccaacac      4080
     cgtcggagga tgctgcggaa cacataaaga tcgcaaaaag acttcgaaaa caaacagtgg      4140
     aaggcatgat gaaccatgca ctcgacggtt catcagaaga aaacttacgt ggtccgcagc      4200
     atcctcaaat cgcagaaaag gctcccggcg ccgacggcca caccaccacg ctcgacccgg      4260
     atctccaccc ggccccaaca agcggacccc caagaccggc ttgcctcccc gcttgctgga      4320
     gggggttgtt gtggcacctg gaaaagacag agacgagatt attgaaggac aaaaacggga      4380
     aaaggcagaa catcctgggt ggaattaaat ttagatcagt aattatttgg tcagagtaaa      4440
     gtaaaatttt ttaaagtaaa atcaatatag ggacaaattc ggaaaacaac tcaaaattgt      4500
     attagtggtg cttccctgtg tgtatgctta catacacagg gagaagcacc accacgcaac      4560
     catattgatg gaactaaaaa attgtcaaaa ttaaaattgt aaatataaag ataaagttaa      4620
     aatgtaaagt aaataggtta aaaatgtaaa aaaaattagc aaaattaaac agtaaaataa      4680
     gtttaaatgt aaaaaagtag aagcaactta gaaaattgta atttaaaaac caaaatttat      4740
     aaaaatgttg taaaaaattt attaataaag atgaaaaagg gctctgaccc atacatgtca      4800
     ggggtgaatg cgagggcggc acaaagccgt cctcataaaa aaaaaaaaaa aaaaaaaaaa      4860
     aaaaaaaaaa aa                                                          4872
//
ID   TRAS-2_PXu  repbase;    DNA;    INV; 6692 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-6692
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3098-3098 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~93% identical to consensus. Target is unknown.
XX
FH   Key           Location/Qualifiers
FT   CDS           1379..4849
FT                 /product="TRAS-2_PXu_2p"
FT                 /note="apurinic-like endonuclease, reverse
FT                 transcriptase and ribonuclease H."
FT                 /translation="HTIAEGTQGENTANNNQKYRALQINLQRSQTATAELI
FT                 LEAASRKLTFAMIQEPYIGNIGEVKQYPGTRIIQHVRTPNSDKVIKSAIVL
FT                 FDNTINITQYPNLTTENIAIVKLRTRSWEIGVISMYLEGDKPIEPYLESVK
FT                 RAIDNLDTQNIILGGDVNAWNTWWGSRFTNSRGEEIAALLDQVELHLLNTG
FT                 SDPTFDAVRGDKRFSSCVDITTCSTTLLNKIENWRTDNKIINSDHKALTFT
FT                 INLEKSIGTDIERTTRKYNTKKANWSVFKEKLEANLIKYNVNKQEIELATT
FT                 PQQLDAIAQNYTNSIQEACDDCFKKEPKNKRTKLTWWTEALTKKKKEVLTK
FT                 KRRIACAAPIRRKKVVEEYLKAKEEYETEIKEAQTSSWKNFCTKQDKEGVW
FT                 EGIYRVIGKTMKRQEDIPLSAEGRTLSEKESAELLARTFYPEDDGEDDNEY
FT                 HKNKRETANHLNILDHNETYDPPFTTEELRIALNGFNPKKAPGSDGLTSDI
FT                 CTQAIDHDPEIFLTLTNKCLKHGHFPKLWKEATVVALRKPGKEKYTEPKSY
FT                 RPIGLLPVMGKVLEKMLVGRIKWHIIPRLSTRQFGFMPQRGTEDALYALXX
FT                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE
FT                 DALYVLSQYIKQKLTAKKLVVVVSLDIEGAFDSAWWPQIRIRLAEEKCPIN
FT                 IRRVIDSYLKDRRVKVRYAGQEVSRPTTKGCVQGSIAGPILWNLLLDPLLQ
FT                 GLNKRNEYNQAFADDVVLVFDGDTAIEIQQKANAALAYIKDWGVKNKLKFA
FT                 AHKTCAMLLTKKLKYDTPVLRMGETXITYSQEMKILGLTIDNKLTYNSHIT
FT                 NVCRKAQNFYKQLARAASKSWGLNPEVTRIIYXAVVEPTIXYAANVWAPAA
FT                 KKWNIQKQLNXVQRGFAQKICKAYRTASLNSALILAGLLPLDLRVREXAAL
FT                 YEAKKGILGPERKDAEVEXMAPFXELPHPAEHXHLEYXCLNDQEXVXNNXG
FT                 XEVXIYTDGSKIEEKVGASLSIWKGDVEAKHRKLKLSPHCTVYQAELLAIY
FT                 EAXEQILXMPEKSYAIYSDSRSSLEXXINNEATHPLAVKTRNNXKLAAXKN
FT                 KXNRTXLDXSARRTNRKRESRPASKGSXPKNXNSTKIQPMPNITRKATN"
FT   CDS           4972..6690
FT                 /product="TRAS-2_PXu_3p"
FT                 /translation="QKHCQYIKQKLTAKKLIVVVSLDIEGAFDSAWWPQIR
FT                 IRLAEEKCPINIRRVIDSYLKDRRVKVRYAGQEVSRPTTKGCVQGSIAGPI
FT                 LWNLLLDPLLQGLNKRNEYNQAFADDVVLVFDGDTAIEIQQKANAALAYIK
FT                 DWGVKNKLKFAAHKTCAMLLTKKLKYDTPVLRMGETEITYSQEMKILGLTI
FT                 DNKLTYNSHITNVCRKAQNFYKQLARAASKSWGLNPEVTRIIYKAVVEPTI
FT                 MYAANVWAPAAKKWNIQKQLNSVQRGFAQKICKAYRTVSLNSALILAGLLP
FT                 LDLRVRETAALYEAKKGILGPERKDAEIEKMVPFNELPHPAEHKHLKYECL
FT                 NNQEQVDNNRGVEVQIYTDGSKIEEKVGASLSIWKGDIETKHRKLKLSPYC
FT                 TVYQAELLAIYEATEQILQMPEKSYAIYSDSRSSLESIINNEATHPLAVKI
FT                 RNNLKLAATKNKRTELYWIKAHAGLIGNERADLLAKEAALKTKTAPKYNLC
FT                 PISHEKRQIRSETIEMWNKRYTENKTAEGTKLFFPDATIAYRTITKISMTK
FT                 TLTQVMTGHGGFRAYLHRFKLRPDPS"
FT   CDS           join(3..482,266..1072,988..1389)
FT                 /product="TRAS-2_PXu_1p"
FT                 /translation="FGYRTPEKRASTSREDPSPTKTSKAKRSIDNWEPVNT
FT                 ESKERPTRSPTRTKXTETEAPXKKTTXTKSTGITLKVPIXTGGSPRKYKDR
FT                 MTEGRACLSKIKINLGLSRNIKTEIKQEVTSAVDRLYQLLEEAEGKRDKXQ
FT                 XEEERIDEAPTSEIEEPAKQTNDRGKSVPVKNKNKFRIIEEHQNRDXTRSN
FT                 QCSGQTLPTVGRGGRQKGQXTAGGGKNRRGTNIRNRRTSETNLAEKLDEHA
FT                 KLIEDSNKRIKELTETIXRQQEHQKKTYASIVMQGNKTPTEQRALHSVVIT
FT                 AKDETETGEEVLNRIRKAVNARSGEVTVEKIRKAKDRKIIVGCRTEEEREV
FT                 LKXKLKMADKELDIQEVKNKDPLVVLKDVFSYNNNEEVKMAIKNQNKNLFK
FT                 DLGEXDKMEVLYRRRARNPLASHIVXRVSPRYGTGNGSTLQKESQEPTGQP
FT                 YRXKSIPPIWNRMIEAGRXQIDLQRVRVEDQSPLIQCSTCLGYGHSKRFCK
FT                 EETEKCGHCGGPHMGDKCPSRLNGTAPSCCNCMQAKLEKTNHNAFSQECPI
FT                 RKKWERIARAKVAYHC"
XX
SQ   Sequence 6692 BP; 2557 A; 1482 C; 1374 G; 1072 T; 207 other;
     tgtttggcta ccgcacaccg gagaagaggg cgagtacttc acgagaggac ccctcgccaa        60
     cgaaaacatc caaagcaaag agaagcatag acaactggga gccagttaac acagagagca       120
     aagaaaggcc gacccgctct ccaacaagga caaaagmaac tgaaacagaa gcaccgasca       180
     aaaagaccac acamacaaaa tctaccggaa taacgctcaa agtaccsata gsaacaggag       240
     gaagtccgcg caagtacaaa gatagaatga cagagggaag agcgtgcctg tcaaaaataa       300
     aaataaattt aggattatcg aggaacatca aaacagagat waaacaagaa gtaaccagtg       360
     cagtggacag actttaccaa ctgttggaag aggcggaagg caaaagggac aagasacagc       420
     mggaggagga aagaatcgac gaggcaccaa catcagaaat agaagaacca gcgaaacaaa       480
     cctagctgag aaactggacg agcacgcaaa actgatagaa gacagcaaca aaagaataaa       540
     agaactaaca gagaccatcs agaggcaaca agaacaccaa aaaaagacat acgccagcat       600
     tgtgatgcag ggaaacaaaa cccctacaga acaaagagcg ctgcattcag tcgttataac       660
     agctaaagac gaaacagaga caggagaaga ggtactgaat agaataagaa aagctgtaaa       720
     cgcaagaagc ggggaagtaa cagtagaaaa aatcagaaaa gcaaaagata gaaaaatcat       780
     agttgggtgc aggactgagg aagaaagaga agtactaaaa gmaaaactaa aaatggctga       840
     caaagaacta gatatccaag aagttaaaaa caaagatcca ctagtwgtat taaaagacgt       900
     gttttcatat aacaacaatg aggaagttaa aatggcaata aaaaatcaaa acaaaaatct       960
     atttaaagac ctcggagagc akgataaaat ggaagtactt tacagaagga gagccaggaa      1020
     cccactggcc agccatatcg ttmtaagagt atccccccga tatggaacag gatgatagag      1080
     gcaggaagaw tacagataga tctacaaaga gtgagagtgg aggatcagtc ccccctcata      1140
     caatgctcga cctgcctggg atacgggcat tcaaagcgtt tctgcaagga agagaccgag      1200
     aagtgtgggc actgtggagg accccatatg ggagacaaat gcccctcaag gctgaatggc      1260
     acagcwccgt cctgctgtaa ctgcatgcaa gctaaactag agaagaccaa ccacaacgca      1320
     tttagtcagg agtgtcccat aaggaaaaag tgggagcgca tagcaagggc taaagtagca      1380
     taccattgct gagggcaccc aaggggaaaa tacagcaaat aataaccaaa aatatagggc      1440
     actacaaata aacttacaac gcagccagac cgcaacagcg gaacttatat tagaggccgc      1500
     atcgagaaag ctcacgtttg ccatgatcca agaaccatac ataggaaata taggagaagt      1560
     caaacaatat cccggaacta gaataattca acacgtaaga acaccaaact cagataaagt      1620
     aataaaatca gcaatagtat tattcgacaa cacaatcaac ataacgcagt atccaaacct      1680
     aactacagaa aacatagcaa tagttaaact aagaacaaga tcatgggaga taggagtgat      1740
     ctcgatgtac ctggagggtg ataaaccaat agagccatat ttagagtcag taaaacgagc      1800
     aatagataac ttagacacac aaaacataat attaggagga gacgtcaatg cctggaacac      1860
     gtggtgggga agtcgattca caaacagcag aggagaagaa attgcagcat tactagatca      1920
     agtagaatta caccttttaa acacaggatc tgaccccacc ttcgatgcag tcagaggcga      1980
     caaaagattc tctagctgtg ttgacataac cacctgctca acaacactat taaataaaat      2040
     agaaaactgg cgtaccgata ataaaataat aaactctgac cacaaagcat taacattcac      2100
     catcaactta gaaaaatcaa tcggaacaga tatagaacgc actacaagaa aatataatac      2160
     aaagaaagct aactggagtg tatttaaaga aaaattagaa gcaaacttaa taaaatataa      2220
     cgttaacaag caggaaatag aattagccac aacccctcaa caattagatg caatagccca      2280
     aaactacact aactccatac aggaagcttg tgatgactgt ttcaaaaaag agcccaaaaa      2340
     caaaagaacc aaactcacct ggtggacaga agccctcacg aagaagaaga aagaggtcct      2400
     cacgaagaaa agaaggatag cttgcgccgc tccaatccgc aggaagaagg tagtcgaaga      2460
     gtacctgaaa gcaaaagaag aatatgagac cgaaataaag gaagcacaaa catccagctg      2520
     gaaaaatttc tgcacaaaac aggacaaaga aggagtatgg gaaggaatat atcgagtgat      2580
     aggaaaaaca atgaaaagac aagaagatat accactctct gctgaaggaa ggacactaag      2640
     cgagaaagag tctgcagaat tattagcacg cactttctac ccagaggatg acggagaaga      2700
     tgacaatgaa taccacaaaa acaaaagaga aacggcaaac cacctaaata ttctggacca      2760
     caacgaaact tatgacccac cttttaccac cgaagagcta agaatagcgc taaatggatt      2820
     taatccaaag aaagcaccgg gatcggatgg actgacatcc gatatatgca cccaagcaat      2880
     agaccatgac ccagaaatat ttctaacact aacaaataaa tgcctcaaac acggacactt      2940
     cccaaaactg tggaaagaag caacagttgt tgccctaagg aagcccggaa aagagaagta      3000
     cacagaacca aaatcatata gaccgatcgg cctccttcct gtaatgggga aagtccttga      3060
     gaaaatgctc gtcgggagga taaagtggca tatcatcccc cgactcagca cacgccaatt      3120
     tggatttatg ccacaaagag gaactgaaga cgccctctat gctctaagnn nnnnnnnnnn      3180
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3240
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3300
     nnnnnnnnnn nnnnnnnnnn nggaagacgc cctctatgtc ctaagtcaat acataaagca      3360
     aaaactaaca gcaaaaaaat tagtagtagt cgtctcacta gacatagagg gtgcatttga      3420
     cagtgcttgg tggcctcaaa taaggatcag actggctgaa gaaaaatgcc cgatcaacat      3480
     cagaagggtc attgacagtt acctaaaaga cagaagagta aaagtcagat acgcaggcca      3540
     ggaggtctcc aggccaacaa cgaaaggatg cgtccaaggc tcaattgccg ggcctatact      3600
     ctggaacctt ttgttggacc cactactcca gggactcaac aaaaggaacg aatacaacca      3660
     ggcattcgca gacgacgtcg tgttggtgtt cgatggagac acggcaatag aaatccagca      3720
     gaaggccaac gccgctctcg cctatatcaa agactggggt gtgaaaaaca aactaaaatt      3780
     cgcagcgcac aagacctgcg ccatgctact caccaaaaag ctaaagtatg acaccccagt      3840
     tctgcgaatg ggcgagaccg amatmaccta ctcacaagaa atgaagatcc tgggcctaac      3900
     aatagacaac aaactcacct acaatagtca catcacaaat gtatgcagga aggcccagaa      3960
     cttttacaag caactagcca gagcagcgag caaatcatgg ggcctaaacc ccgaagtaac      4020
     ccgcataatt tacamagccg tsgtcgaacc gacsatcwtg tacgcagcaa atgtctgggc      4080
     accggctgcg aagaagtgga acatccaaaa gcagctwaac kcagtgcaac gaggatttgc      4140
     ccaaaaaatc tgcaaggcmt acagaacagc ctccttaaac tcagcactaa tcctggccgg      4200
     gctcctgccc ctcgatctcc gggtacgaga gamggcggcc ctgtatgagg cgaagaaggg      4260
     catwctcgga ccggaacgta aggacgcaga agtmgagagm atggccccgt ttaasgagct      4320
     accwcacccg gcagaacaca wacacctgga atacsaatgc ctaaacgacc aagaasaagt      4380
     agamaacaac agmggakcgg aagtmcwaat atacacmgat ggcagcaaga tcgaggaaaa      4440
     ggtcggggcg tccctttcca tatggaaagg cgacgtcgaa gcaaaacacc gcaagctaaa      4500
     attgtcacca cactgcaccg tctaccaagc cgaactgcta gcaatatacg aggccwcaga      4560
     acagatccta maaatgccag aaaaaagcta cgccatctac agtgactcma gatcatccct      4620
     agaaascwta ataaacaacg aagcaaccca ccccttagcc gtaaagacaa gaaacaacmt      4680
     taaactcgct gcaamcaaga acaagagsaa cagaactmta ctggatwaaa gcgcacgccg      4740
     gactaatagg aaacgagaga gcmgacctgc tagcaaagga agcmgcccta aaaacmaaaa      4800
     cagcaccaaa atacaaccta tgcccaatat cacacgaaaa gcgacaaatt agatcagaga      4860
     ccatmgagat gtggaacaaa agatacaccg agaacgaaac agccgaagka accaaactct      4920
     tcttcccaga cgcaacaata gcttacagga ccataacaaa aattagtatg acaaaaacac      4980
     tgtcaataca taaagcaaaa actaacagca aaaaaattaa tagtagtcgt ctcactagac      5040
     atagagggtg catttgacag tgcttggtgg cctcaaataa ggatcagact ggctgaagaa      5100
     aaatgcccga tcaacatcag aagggtcatt gacagttatc taaaagacag aagagtaaaa      5160
     gtcagatatg caggccagga ggtctccagg ccaacaacga aaggatgcgt ccaaggctca      5220
     attgccgggc ctatactctg gaaccttttg ttggacccac tactccaggg actcaacaaa      5280
     aggaacgaat acaaccaggc attcgcagac gacgtcgtgt tggtgttcga tggagacacg      5340
     gcaatagaaa tccagcagaa ggccaacgct gctctcgcct atatcaaaga ctggggtgtg      5400
     aaaaacaaac taaaattcgc agcgcacaag acctgcgcca tgctactcac caaaaagcta      5460
     aagtatgaca ccccagttct gcgaatgggc gagaccgaaa taacctactc acaagaaatg      5520
     aagatcctgg gcctaacaat agacaacaaa cttacctata atagtcacat cacaaatgta      5580
     tgcaggaagg cccagaactt ttacaagcaa ctagccagag cagcgagcaa atcatggggc      5640
     ctaaaccccg aagtaacccg cataatttat aaagctgtgg tcgaaccaac gatcatgtat      5700
     gcagcaaatg tctgggcacc ggctgcgaag aaatggaaca tccaaaaaca gcttaattca      5760
     gtacaacgag gatttgccca aaaaatctgt aaggcctaca gaacagtctc cttaaactca      5820
     gcactaatcc tggccgggct cctgcccctc gatctccggg tacgagagac agcggctctg      5880
     tatgaggcaa agaaaggcat actcggacca gaacgtaaag acgcagaaat agagaaaatg      5940
     gtcccgttta acgaactacc tcacccagca gaacacaaac acctgaaata cgaatgctta      6000
     aacaaccaag aacaagtaga caacaacaga ggagtggaag tccaaatata caccgatggc      6060
     agcaagattg aagaaaaggt cggggcgtct ctttccatat ggaaaggcga catcgaaaca      6120
     aaacaccgca aactaaaatt gtcaccatac tgcaccgtct accaagccga actattagca      6180
     atatacgagg ccacagaaca gatcctacaa atgccagaaa aaagctacgc catctacagt      6240
     gattcaagat catccctaga aagcataata aacaacgaag caacccaccc cttagctgta      6300
     aaaataagaa acaaccttaa actcgctgca accaaaaaca agagaacaga actatactgg      6360
     attaaagcac atgccggatt aataggaaac gagagagcag acctgttagc aaaggaagcc      6420
     gccctaaaaa ccaaaacagc accaaaatac aacctatgcc caatatcaca cgaaaagcga      6480
     caaattagat cagagaccat agagatgtgg aataaaagat ataccgaaaa caaaacagcc      6540
     gaaggaacca aactcttttt cccagatgca acaatagctt atagaaccat aacaaaaatt      6600
     agtatgacaa aaacactcac ccaagttatg actggccatg gcggtttcag agcgtatctc      6660
     caccgtttca aactcagacc cgacccctca tg                                    6692
//
ID   TRAS1       repbase;    DNA;    INV; 7850 BP.
XX
AC   D38414;
XX
DT   04-JUN-2009 (Rel. 14.06, Created)
DT   01-JUL-2010 (Rel. 15.08, Last updated, Version 3)
XX
DE   Complete sequence of retrotransposon TRAS1.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS1.
XX
NM   TRAS1.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-7850
RA   Okazaki S., Ishikawa H. and Fujiwara H.;
RT   "Structural analysis of TRAS1, a novel family of telomeric
RT   repeat-associated retrotransposons in the silkworm, Bombyx
RT   mori.";
RL   Mol. Cell. Biol 15(8), 4545-4552 (1995).
XX
DR   EMBL/GenBank/DDBJ; D38414; Positions       1    7850.
XX
FH   Key           Location/Qualifiers
FT   CDS           2434..3813
FT                 /product="TRAS1_1p"
FT                 /translation="MYANIRTPVTKNLNSPPKNADHAGSSNTDDPNITRSV
FT                 RRSVGEWESAKADQAIKLKTPTSPTKKPSEAPQKQKIQGFPSKTAEARACL
FT                 SKAKLNLENSRNLKTDIKMAVLQAVERLYELVKEAEGKVTRGQKIEEKGTH
FT                 KEKEAETKEKDKGQDETLNALKKKLEENCSLLRENSEKMEELKQMFRSQKA
FT                 TYADVVVSQPGRQPPKCTTLHSIMVSSKDENETGDGILTELRKTASEDEGW
FT                 VRVERVRKIKDRKIIMSYRTEEERTKATQRLKKSEGELVVEEIKNKDPLLI
FT                 LYNVLKMHSDEDLQKALRSKNKDLFRNLNKEDDRIEVKYKKSARNPHTHHV
FT                 VLKVSPTIWNRALSMGSLHIDIQPVRVADQTPLVQCTLCLGFGHSRKFCKE
FT                 ALPSCSHCGGPHMRADCPDRLTGIEPTCCNCRKANMTTTAHNAFSRECPVM
FT                 AKWDNIARRAVEYHC"
FT   CDS           3788..7462
FT                 /product="TRAS1_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="HGEQWNTTAKVRPKNGPPSPPYRVLQANLQRKKLATA
FT                 ELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGTVKAAIA
FT                 VFDHDLDVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIESYLEQI
FT                 KRVERKMGPKRLIFGGDANAKSTWWGCKEDDARGDQLMGTLGELGLHILNE
FT                 GDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVF
FT                 NIRLQKSKSIKIERTTRIFNTKKANWSLFHEKMAQLLLDNNMTTLIDTIDN
FT                 KTKVESAINTYTNIITKTCEQSIPKKTSREILTIPWWSEKLAEMRKETNTM
FT                 RRRIRNAAQDRRQHVVDEYLKQKEKYESEVREAQAGSWKEFCGKQDREGVW
FT                 EGIYRVMSRARTREEDCPLTDVNGAPLDPEKSAKLLAETFYPEDREEEDND
FT                 EHAEIRRRAKISEGVHDEYVPSFTVNELKHALKSFNPKKAPGADGLTSDIC
FT                 THAVDLDQKLFLGLINKCLEHRYFPKIWKAATVVILRKSGKDSYTEPKSHR
FT                 PIGLLPVLGKLYEKMLVARLKYHLLPRMSTRQFGFMPQRSTEDSLYTLMQH
FT                 VKEKLKEKRIITIVSLDIEGAFDSAWWPALEVRLAEEKCPEYLRRVISSYL
FT                 SDRRVSVRYAGAEYERATSKGCVQGSIGGPILWNLLLDPLIHQLQARGEYI
FT                 QAFADDVVLVFDGDSALQIERQANTSLEHVQAWGVRNKLKFAPHKTCAMTI
FT                 TRRLKYDTPRLNMGGTEIATYKELRILGLTIDDKLTFNTHVRNVCKKAIGM
FT                 YKILARTARVGWGLSPEVIRVIYVAVVEPTVLYAAAVWHESVYKLGVQKQL
FT                 NVIQRGFAQKLCRAYRTVSLNSALLMAGILPLDLRVREAASLFEAKKGVCQ
FT                 SWLGDREIERMSSAMDAPHPAEQQSLEFGNLVDEEQYNNLNHLDVRIFTDG
FT                 SKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQAELLALSYAVKEAQLR
FT                 NGSTFGVFSDSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTVALYWIK
FT                 AHAGLEGNERADQLAKEAALLSKKSPNYDLCPVSYVKRIIRSGSLDEWNRR
FT                 YRDSDRASVTKMFFPDAVAAYSTVRKMRITGHITQFTTGHGGFSEYLARFK
FT                 CKGDPSCACEPGMPETVEHLLTSCPIFGKQRFELENKINKIVNKENLCKLI
FT                 VEKYTKELFIVMLYK"
XX
SQ   Sequence 7850 BP; 2622 A; 1686 C; 1836 G; 1704 T; 2 other;
     cgagttcccc ctcagctctc gtggcggtcg gatcgttttg cgtgcgctcc gcgtttaaaa        60
     aaatcgaacg aacgggttat tttacgcaaa atataaagtg ttatatatca aaaggtgcgc       120
     gttcgcgaat actatccgtg tgtgaaaaaa gtgcgaaaat cgaactactc tgtgagacac       180
     caggtccaaa aaacggattc taacctgcaa attagatatt ccagacgcaa cgctgcctga       240
     ttttcagcga caacttacgt ttcttgaact gcagttcgaa gcgcaccagg ggcagctaca       300
     atcaggtgaa gtctcggatt tttccgggta aaactcaccg agccacaaag gaaaaaccga       360
     aaaccacgtg gccacgtgct cctagttccc gacgtcttgg agaaatttca ccaactcgaa       420
     atcgtgaact atgtcgagac acgtcatttg acacttcgaa cttcgaaatc ggagcatccc       480
     cctggaagtt ggaagacttt gaaggcacta cgaacttaga tctcatccag agctgaaaca       540
     agatctatga cgtcaccttt tctggacccc tagatattgc ccaccacttg gacaataatt       600
     gtacaaaatt tcaggaattt ttgacaggta gttttcgagt tacagaggac ataaaaaacc       660
     tgtgacgtca cgcagagccg aaagtaccta tgacatcctg ctcccggcag caccctaaag       720
     aaaacctcct acaaggaagg aaactcctcg ggaccaaccc cctgagacgc gaagtttctg       780
     cactagaagc tatttgcaga aaattgtcag ccacctccag cttcggcagc ttcctgaggg       840
     tggtgtggac tacggaggac ctccggacag gcgggacatc agggaccggt tcacctcctg       900
     tggaacaaaa tttttagatt gtaagtagga ctaaggatag attttatata gaatttaagg       960
     tggaacaagg gtaccggccg gcattaccgc ttaagtttgt acaccccctg gagcctcagg      1020
     ggacgagata tcgcaaaaat aacaaaaaat cggttgtctt ggggacaacg atcatagggt      1080
     cgactaacat attggcaccc caaaaaacca cccccaacga gattttttgg aaaaacggga      1140
     aaaatttcgg ttttcccgat ttccaaagca gaaaacaagg gacttgacgg taaatttggg      1200
     ccgcgaccaa taccccagta tttttccccg tctcgatatc ccgttcctaa ggccaaaacc      1260
     aggcaaacga agctggcaaa aaactacccc taagtttgag ggcgaataaa aaatcgaccg      1320
     agtgacctat ccctttgtga tctcgggacc ggacggccca aattaaaata ctgcaccccg      1380
     gtacttttcc cggcgaaatc gaaaaattgg aactaaatta acaggctgtt taaaatactt      1440
     attcaagcag ttcgacggca gagggataaa gttgtttagg tatttaaaaa ttccaaaaat      1500
     acctcatatc tcgtaaaccg tgcgtcctag cccaaaaata acgaaaaatt tctanncccc      1560
     tccctaaccc accccccctg ctccgcaaac cctaaccctt aaacctcccc tccccccgca      1620
     cccaacccct agggtcccaa ccccctaccc ctaaaattaa cttatgacca ttattacttg      1680
     gactctgaaa aatttttagt agcaaatttt ataattataa aatattaaaa aattattgac      1740
     tattattttg gcatactcat aaataggtag tataaggaca ctttaggggt agcaaccccc      1800
     aaattaaata aactgcctta tctcgcgaac gggaagagct acagtaacgg ggttttttgc      1860
     atgcaatagg gcttggtctc gagcagtttt ttttggacag aggtggagac tctacgtaga      1920
     gtcgaaactt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaatttt acattatacg      1980
     atcgaaatcg aattgattga ccgtgtatct tttaagttgt aaaaatacct acctagttac      2040
     attctcatac tgactctagg tagagaaaaa ttttgtgcga tccaataaca aaattttttg      2100
     catacattcc tacacacaca cacacacacg cactcacaca catatacaca tacacacaca      2160
     tacacacata cacacacaca cacacacaca cacaagtata taaataaaaa aaccttctta      2220
     ccgacactcg acgagtctag aactcgtata gcctgacgga atctgtaaca aaaaacaaaa      2280
     aacagagata taatttttta tttattttat tttgcttatt tgtaccgtcc cttatataac      2340
     ttatacaaac cttttgtgac gtcctgttta tataattata ttacgtgaca ttgacgcgtc      2400
     ctcactgcaa ggaaaataaa aattaaatta acgatgtacg caaatattag aaccccagtg      2460
     accaaaaacc taaactctcc tccgaaaaac gcagatcatg ctggatcatc caatacagat      2520
     gacccaaata ttacaagaag cgtaagacga agtgtgggag aatgggaatc agccaaggcc      2580
     gaccaagcca taaaattgaa aacaccaaca tctcccacaa aaaagccatc tgaagccccc      2640
     caaaaacaaa aaatacaagg ctttccaagc aagactgcgg aagctagagc ctgtcttagt      2700
     aaggccaaat taaatcttga aaattcgaga aatttgaaga ctgatataaa aatggcagtc      2760
     ttacaagcag tagaaaggct ttatgagctt gtaaaagagg cggaaggaaa agttacaagg      2820
     gggcagaaaa tagaggaaaa gggaacgcat aaagagaaag aagcagagac caaggaaaag      2880
     gataaaggtc aggatgagac cttaaatgca ttaaagaaaa aactggaaga aaattgcagt      2940
     ctcctaagag aaaactccga gaagatggaa gagctaaaac aaatgttcag gagtcaaaaa      3000
     gcgacttatg cggatgtggt ggtatcacag ccggggaggc aacccccaaa atgcaccaca      3060
     ttacattcaa taatggtctc atctaaagac gaaaacgaaa caggcgatgg tattctcacg      3120
     gaactccgga aaacagccag tgaagatgaa gggtgggtga gagtggaaag agtgagaaag      3180
     attaaagaca ggaaaattat aatgagttat agaacagaag aagagagaac aaaggcaaca      3240
     cagagattaa aaaagtcaga gggggaactc gtcgttgaag agataaaaaa taaggatccc      3300
     ttattgatac tctataatgt tttaaagatg cattccgacg aggacctcca aaaagcctta      3360
     agaagcaaaa ataaagacct cttccgtaac ctcaacaaag aggatgacag gatagaggta      3420
     aaatataaaa agagtgcccg taaccctcac acccaccacg tagtgctaaa agtgtcccca      3480
     accatctgga accgagccct gagcatgggg tcgctgcaca ttgatataca accagttaga      3540
     gtggcggacc aaacgccact ggtgcagtgt accctttgtc tggggttcgg acatagcagg      3600
     aaattctgta aagaagcttt accgagctgc agccattgcg gcggaccaca tatgagggcc      3660
     gactgtcccg acagactgac aggcatagag cctacctgct gtaactgccg gaaggcaaat      3720
     atgacaacca cagcacacaa cgcttttagt agggagtgcc ccgtaatggc aaaatgggac      3780
     aatatagcac ggcgagcagt ggaataccac tgctaaagtt agaccaaaga atggaccccc      3840
     atcacccccc tacagagttt tgcaagcaaa cctccaaagg aaaaaattag caaccgctga      3900
     gttggccatt gaagccgcta ctcggaaagc tgcaatagcc ttaattcaag agccatacgt      3960
     gggcggggca aagagtatga aaggattccg gggcgtaagg gtcttccaaa gcactgcaca      4020
     aggagatggg actgtcaaag ctgcgatagc tgtctttgat cacgacttgg acgtgataca      4080
     gtacccgcaa ctcaccacca ataacatcgt ggtggtgggg atccggacca gggcctggga      4140
     gatcacgctg gtgtcctatt acttcgagcc agacaagccc atagagtctt atcttgaaca      4200
     gatcaaaagg gtagagagaa aaatgggacc caaaaggcta atctttggag gtgacgcgaa      4260
     tgccaagagt acctggtggg ggtgcaagga agatgatgca cgaggagatc aattgatggg      4320
     gactctcgga gagttgggcc tacatattct aaacgaggga gatgtcccga catttgatac      4380
     gatcagagga ggtaagaggt accaaagccg cgtggatgtg acgttctgta ccgaagacat      4440
     gctggacctg atagatggat ggcgagtcga tgaagaccta gtgagctcgg atcacaacgg      4500
     tatggtattc aatattagac tccaaaaatc aaaaagcatc aaaattgaaa gaactactag      4560
     gatatttaac actaaaaaag ccaattggag cctatttcat gagaagatgg cccaattact      4620
     gctagataac aatatgacaa ctttgataga tacaatagac aataaaacaa aagtagaatc      4680
     tgcaatcaat acatatacaa acataataac aaaaacttgt gaacaatcaa ttccaaaaaa      4740
     gacaagcaga gaaatactta ccataccgtg gtggtcggag aagctcgcag agatgaggaa      4800
     ggagacgaac acgatgagac gccgcatcag gaacgcagcg caggatcgaa gacaacacgt      4860
     ggttgatgag tacctgaaac aaaaagaaaa atatgagtcg gaagttagag aggcccaagc      4920
     cgggagctgg aaggagttct gtgggaagca ggatagggaa ggggtctggg agggaatata      4980
     tagggtgatg agtagagctc ggacaaggga ggaagattgc cctttaacag atgtgaatgg      5040
     agccccgctg gaccctgaaa agtcagcaaa gctcctggca gagaccttct acccggagga      5100
     ccgggaagag gaggataatg atgagcatgc cgaaatcaga aggagggcta aaataagcga      5160
     aggtgtgcat gatgagtatg taccctcgtt tactgttaat gaactcaagc atgctctaaa      5220
     aagttttaac ccaaagaagg caccaggagc agacggactc acgtccgaca tatgcactca      5280
     tgcagtggac ctggaccaaa aactctttct cggcctaatc aataagtgct tagagcatag      5340
     atactttccg aaaatctgga aagcggcaac agtggtgata ctgaggaagt cgggaaagga      5400
     ctcgtacact gaaccgaagt cgcacaggcc gattggtctt ttgcctgtac tgggaaagct      5460
     gtacgagaag atgctggtgg cccgactcaa gtaccatcta ttaccgagga tgagtactcg      5520
     ccaattcggc ttcatgcccc aaaggagcac cgaggactcc ctttatacac taatgcagca      5580
     tgtaaaagag aaactaaagg aaaaacgcat tattaccata gtgtcattgg atatagaggg      5640
     agccttcgat agcgcgtggt ggccggcttt ggaggtccga ttggctgagg aaaagtgtcc      5700
     ggagtacttg agacgggtca tcagcagcta tctcagcgat agaagagtct cagtgcgcta      5760
     cgcaggcgct gaatatgaaa gggctaccag caagggttgc gtgcagggat ccatcggagg      5820
     cccaattttg tggaacttgc tcctcgaccc attaattcac caacttcaag ccagaggtga      5880
     atacatacaa gcatttgctg atgatgtggt cctggtcttc gatggagact ctgcactgca      5940
     aatagaaaga caggcaaaca cctccctcga acatgttcaa gcgtggggcg tccgaaataa      6000
     gctcaaattc gcgccgcaca aaacttgtgc gatgacaata acgcggaggc taaagtacga      6060
     cacaccacgc ttgaacatgg gcggaacgga gatcgccacc tataaagagc tccggatctt      6120
     ggggctcact atcgacgata agctcacatt caacacacac gttaggaatg tatgtaaaaa      6180
     agctatcgga atgtataaaa tcctcgcgcg tacagccaga gttggttggg ggttgagtcc      6240
     tgaggttatc agggtgatat atgtggcggt agtagagcct acagtgctgt acgcggctgc      6300
     agtgtggcac gaatcggtat ataagctggg agtccaaaaa cagctaaacg ttattcaaag      6360
     gggcttcgct caaaaacttt gcagggcata tcgcacggtc tccctgaact cggcactgtt      6420
     aatggctggg atactccctt tggatcttcg agttcgagag gcagcctctc tatttgaggc      6480
     caagaagggg gtatgccagt catggcttgg ggacagagag atcgagcgaa tgtcatcagc      6540
     gatggatgcc cctcatcccg cagagcaaca gagtctggag tttggcaatc tggtagacga      6600
     agaacaatac aacaatctca accaccttga cgtgagaatt ttcacggacg ggagcaagat      6660
     tgagggccga gtcggggccg ctttatccat ttgggatggt gaggtcgaga taaggtccct      6720
     caagcttgct ctcgcaccct actgtaccgt ctatcaggcc gaactcctgg ctctgagcta      6780
     tgcggttaag gaagcccagc tccgaaacgg gtctactttt ggggtcttta gcgacagcaa      6840
     agcggcactc ctcacagtca taaatcacgg ttccctccat ccactagccg tagacataag      6900
     aaaaatgtta aaacaatgcg cactgcaaaa taagaccgtt gccttatact ggattaaggc      6960
     acacgcggga ttggagggaa acgagcgagc agatcaactc gctaaggaag ccgctctgct      7020
     gtcgaaaaag agcccaaatt acgacctgtg ccccgtttca tacgtcaagc gaatcatccg      7080
     gagtggttcg cttgacgaat ggaacaggcg atatcgggat agcgacagag catcagtcac      7140
     taaaatgttt tttccggatg cagtagcggc gtacagcact gtaagaaaga tgaggataac      7200
     tgggcacatt acccagttca ctacggggca cggagggttc tccgaatact tggctaggtt      7260
     caagtgtaag ggggacccct cgtgtgcctg tgaacctggc atgccggaaa cggttgaaca      7320
     cctgctgacc agttgtccca tttttgggaa gcagaggttt gagcttgaaa ataaaataaa      7380
     caaaatcgta aataaggaaa atttgtgtaa attgattgtt gaaaagtata ctaaggaatt      7440
     gtttatagtt atgctgtaca aatagtaaaa gtagtgaata agaaaaacaa agaatgaaat      7500
     tatgttatca caatatcgtg agtatattgt agagtagcat taatggaaga agttaaaata      7560
     aatagtagtt aagtatagcg taagatatag tcagtaagaa aaattgtaag taaattatta      7620
     tgtagattaa gaaattgtaa taaaagtaaa ctgcccataa catcctagac cccaagttaa      7680
     gattagaatt aaagtatgaa tgagaagaac gaagtacgag agggataaat gatagaactg      7740
     gaataataga ggacggaatg cctgagaaga ccctagacta agcaacaaaa atgaaagacc      7800
     ttatgtccag ccttcaaagc tttgcaccct tgcagagaaa agagtgactt                 7850
//
ID   TRAS1_R1_Hmel repbase;    DNA;    INV; 3918 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a R1/TRAS1 element from Heliconius melpomene.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS1_R1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3918
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           726..3608
FT                 /product="TRAS1_R1_Hmel_1p"
FT                 /translation="GNGHARNPGLPKIRLRSSDALEVTINKNLDQQSLHTI
FT                 LESEATXTPFLTFARKAILTAAKRNSSLVALPSAPIPAPPSQTSQTPAPAP
FT                 SQNPAPLTQNSQTPVPTPPTTPAPLPQAPQIPTSAPLPIPVLIQQTHSTPA
FT                 SPTPTIPTKSTINKLLASLKKTTGGLPKKWKKLTTKVNPPQHNPPTLATTN
FT                 VMAMLNEKAADGQPGIRVRSVALFMAEGSERVGIAFSRSEPPDRVQISPGL
FT                 AALLKGSTSKTSVRSAKIDSLTWQRLAEPPCRILRSQNKXIALLECGEKSP
FT                 FAQLDSILRRVRECTPQGAPKTISVDAMRVEPYRGSIANYYECLKVAHKHQ
FT                 LVVYEDRGECLDFLKAKKHLPSPSTEAPTETPKQSGSERLQEKLYPEPSTS
FT                 KTNTPTPKHNISRTLARAILGVVAPREKETPKCSASKAARQTSTEEREDIP
FT                 GVEETPKCSASKAARQTSTQEREVKAFFDTRNQREQKGHREGVLEHSRGNI
FT                 TLPDLKIARSPKEHAINAFIEFLATLKATREVNTNXCKKILQTFQRGNFKL
FT                 LEVELDEAKAAIYDNVSSRVIHGSMTGQYMAAYSSTKGFIGLVESERVDDP
FT                 PKFLTSESDQVVVVAECTRVMLDDRILGMANAISSDPEPGAAFVNWELPKL
FT                 SWVNGVPGCGKTTHIIKHFDEDTEVVATTTVEAAKDLREKLAHRLGTKATK
FT                 RVRTMASILVNGFHEGIAINRLTVDEALMNHFGAIVMAARLSGANEVTLIG
FT                 DINQLPYIDRQNLFELRXCRPSLTTNITCELPCTHRSPMDVAYALAGVYNS
FT                 IYSASPIVHSLKVLGYTDARIPHCNDGTLYLVHTQEEKRQLXDQGYGAGAG
FT                 SRVMTIHEAQGQTFADVVIVRTGRARIRVHEXVSHAVVAVTRHTNTCVYYS
FT                 DDGGDAIGNFISRAVGASFTEVVEANLKGAMSQRDDRVIEALIQKLKEGVL
FT                 HKPGQI"
XX
SQ   Sequence 3918 BP; 1263 A; 1061 C; 887 G; 697 T; 10 other;
     gcttggagag cctcgaccag gagaccctcg ataaacacca aatagccggt cccctaatct        60
     tcaccgacgg cagcaaaatc gagggtaaag taggagcagc cctaaccttg tgggaccagg       120
     gtagggagag gaagttctcc acatttcgcc tggagccgca caacaccgtc ttccagtcgg       180
     aaatgtatgc actcttcagg gcaatagaga tggtgaaaaa gycgaaaacg agcgctacca       240
     acatcttaag cgactcgaga tcatccttgg atctactaag atccccatcg acgactcacc       300
     ctctcggcct acaaatgaag agctgcatac gtgacatcca gaacgagggc aggacagtgc       360
     ggttcttctg gttgagggcc cacgttggaa cacccggcaa cgaaagggca gacgagctgg       420
     acgaaaaagg cggcaataaa aaagaagacg gcaccggact atgacaaagt accagtatca       480
     tacrtccgaa agcagatacg cgaggagact gtcaagrcat ggcaagcgag atatgaagcc       540
     tcccaaaccg gatcagtcac aaagctgttc ttaccagacg tcaaaaaggc atatachctg       600
     gtaaggaaaa caaaaataac accaacagac acccagctac tgactggcca cggaggtttc       660
     gccgcctact tgcacagatt ccacttaaag gacagcccat cttgtctctg cgatccgcaa       720
     tgtgaggaaa cggtcacgca cgtaatcctg gactgcccaa gatacggctc agatcgagcg       780
     atgcgctgga ggtcaccatc aacaaaaacc tagaccagca atcactccac accatcttag       840
     aatcagaagc caccakgaca cctttcctca ccttcgcacg taaagccatc ttaacagccg       900
     cgaaacgcaa cagctcgcta gtggctctcc cctccgcgcc aatacccgcg ccaccctcac       960
     aaacatccca aacaccagca cctgcaccat cacaaaaccc tgcaccactc acacaaaatt      1020
     cccaaacacc agtacccaca ccaccaacaa cacctgcacc gcttccacaa gctccccaga      1080
     taccaacttc cgcaccactt ccaatccccg tactaatcca acaaacacac tcgacacctg      1140
     cttctcccac accaacaata ccaacaaaat caacaataaa taaactactg gcctccctca      1200
     aaaagaccac aggaggcctg ccaaagaagt ggaaaaaact aaccacaaaa gtaaacccgc      1260
     cacagcacaa tccaccaaca ctggccacaa ccaacgtgat ggcaatgcta aatgagaagg      1320
     cagcggacgg acaacccgga ataagggtca ggagcgtagc cttgttcatg gccgagggat      1380
     cagaaagggt gggaatagct ttcagtcgct cggaaccgcc ggatagagtc caaatttcac      1440
     caggactagc agccctactc aaaggaagca cgagtaaaac atcggtgagg tcagcaaaaa      1500
     tagactcact gacatggcaa aggctggctg aacccccctg ccgaatactg cggtcacaga      1560
     acaaartgat cgcattgctc gagtgtgggg agaaatctcc ctttgcccaa cttgactcga      1620
     tcctccgaag agttcgggaa tgcacgccgc aaggagcccc taagaccata agcgtagacg      1680
     caatgagggt agaaccttat agaggcagca tagcaaacta ctacgaatgc ctcaaggtcg      1740
     cccacaaaca ccagctagtc gtctacgaag acagggggga atgccttgac ttcctaaagg      1800
     caaagaaaca tctaccttcc ccctcaacag aggctccaac cgaaacgccg aagcagagcg      1860
     gatccgagag gctgcaagag aagctgtacc ccgagccatc cacaagcaag accaacacac      1920
     ccacccccaa acataacatc tcgaggactt tggcgagggc cattctggga gtcgtcgctc      1980
     caagggaaaa agaaacccca aaatgctctg cctctaaggc tgcgcgccaa accagcaccg      2040
     aagaaagaga ggacattccg ggagtcgaag aaactccaaa atgttctgcc tctaaggctg      2100
     cgcgccaaac tagcacgcaa gagagagagg tcaaagcctt tttcgatacc cgaaatcaac      2160
     gggaacaaaa aggacaccgc gaaggcgtac tagagcacag cagaggcaac ataacactac      2220
     ctgacctaaa aatagccaga agcccaaagg aacatgctat aaatgcgttc atcgagttct      2280
     tagccacatt aaaggcaacc cgcgaggtaa acaccaatvt ctgtaaaaag atccttcaga      2340
     ctttccagag agggaacttc aaactcctgg aagtagaact cgatgaagcc aaagccgcca      2400
     tctatgacaa cgtcagctcc cgtgtcattc acggaagcat gacgggacag tacatggcgg      2460
     cctatagcag caccaagggc tttataggcc tggtcgaaag tgaaagagta gacgatcccc      2520
     ccaaattcct tacatcagag agcgaccaag tggtagtagt ggccgaatgc acgagggtga      2580
     tgctggacga taggatactc ggaatggcaa acgccatttc aagcgatcct gagccgggcg      2640
     cagccttcgt gaattgggag ctaccaaaac tttcctgggt aaatggggtt ccggggtgtg      2700
     gtaagacaac tcacattatc aagcacttcg atgaggacac ggaagtagta gcgacaacca      2760
     cagtagaggc cgcgaaagat ctaagagaga agctggcgca ccgccttggc acgaaagcga      2820
     caaagagagt gcgaacaatg gcctcgatct tagtcaacgg ttttcatgag ggaatagcta      2880
     taaaccggct aacggtggac gaagccctca tgaaccactt cggggccatt gttatggcgg      2940
     ccagactgtc aggagcgaac gaggtcacac tcatcggaga tatcaatcag ctgccttaca      3000
     tcgacagaca aaatctattc gaattaaggt antgtaggcc tagcttgaca accaacatca      3060
     catgcgagtt gccttgcaca catcggagcc caatggacgt cgcctatgcc ctcgccggag      3120
     tatataacag catttactcc gcaagcccca ttgtccactc cctaaaggtt ctcggatata      3180
     ccgacgcgcg aataccacac tgtaacgacg gcaccctata tctggtccac acgcaggagg      3240
     agaagaggca gctgaadgac cagggatatg gagctggagc aggttcgcga gtcatgacta      3300
     tccatgaggc tcaggggcag accttcgcag acgtcgtcat cgtccgaacc ggacgcgcac      3360
     ggatccgagt acatgagrgc gtctctcacg cagtcgtcgc agtgacgaga cacaccaaca      3420
     cctgtgtcta ttactctgac gatggcggtg acgcaatagg caacttcatc agccgagcgg      3480
     tgggcgcttc atttacggag gtggtggagg cgaacctaaa aggggcaatg tcacaaagag      3540
     acgatagggt gatagaggca ctgatccaaa aacttaagga aggcgttctg cataagccag      3600
     gccaaatcta aaattccaca cctatataca taataattat acaaaagact ataataatta      3660
     tacaaaagac tctaataatt ataattttta ttctaataat ttctctaata attataatat      3720
     atttttaaaa ttaaaaaaaa attgtcggta ggggtctcat ccaacccctc tagtataagc      3780
     tctagatata agtacagttt aaattgtccc aaaattaagt acgccacatt aaaagaactt      3840
     tcttaaaata aaaaaaggca cgggcaacta tgagcccgtg gatgtagttt tttaaaataa      3900
     aaaaaaaaaa aaaaaaaa                                                    3918
//
ID   TRAS3_BM    repbase;    DNA;    INV; 8005 BP.
XX
AC   AB046668;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   01-JUL-2010 (Rel. 15.08, Last updated, Version 4)
XX
DE   Bombyx mori TRAS3 gene, non-LTR retrotransposon, complete cds.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; TRAS3 gene;
KW   TRAS3_BM.
XX
NM   TRAS3_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Kubo Y., Okazaki S., Anzai T. and Fujiwara H.;
RT   "Structural and phylogenetic analysis of TRAS, telomeric
RT   repeat-specific non-LTR retrotransposon families in Lepidopteran
RT   insects.";
RL   Mol. Biol. Evol 18(5), 848-857 (2001).
XX
DR   Genbank; AB046668; Positions       1    8005.
XX
FH   Key           Location/Qualifiers
FT   CDS           2309..3670
FT                 /product="TRAS3_BM_1p"
FT                 /translation="MTSDKSPRNPKSPEGGERRSIGLRIDEWETSKGKTIP
FT                 SSTKLAAQTVVAAKPTTSQAGKTTSPGQCQDRSAEAKACLLKAKLHLSNSG
FT                 NIKREIKIEVTAALDKLYQLVKDAEMDRKKGKSKEEKTGDVGQRATDRTFT
FT                 VSPMDANIYVAKMEEHAKLLQESKKMMGDLKEAMEKATVTAATYASVAAIQ
FT                 PAATNEKPEVMRQTLHSVVITSKDECETGEKVLDRVRKAVDAKEGWIEVKN
FT                 VRKAKDRKVIIGLGTKAERDKLKNRLEKAETQLHVEEVENRDPLMMLRSVL
FT                 TIHSDEDILKALRNQNRDIFRDLCEGEDRVVIRYRRRARNPHTNHVVVSVS
FT                 PTVWQRATGKGSVHIDLRRIKVEDQSPLVQCTRCLGYGHSKRFCVESVDLC
FT                 SHCGGPHLKTECSDWLAKVPPKCRNCTKADIDNAEHNAFDSNCQVRKRWDD
FT                 LARSTVAYC"
FT   CDS           3663..7346
FT                 /product="TRAS3_BM_2p"
FT                 /note="endonuclease, reverse transcriptase, and
FT                 ribonuclease H."
FT                 /translation="RIAKGSQEDQVPYRVVQANLQRNKLATNEVLVEAARL
FT                 KIAVGLLQEPYVGGAKEMKTQRGMRVFQNADVSGGTVKAAIVVFDHNINVV
FT                 QYPKLTTNNICVVGINTSAWSITLVSFYFEPDHPIEPYLEHLGKIKEEIGR
FT                 SKIIYGGDSNAKSTWWGSPSIDNRGTSMLGTLEELELNILNTGEIPTFDTI
FT                 RGGKRYKSYVDVTACSTDLMDLVSDWRVDEGLTTSDHNAILFNIHTKRAIG
FT                 IKIQRTTRIYNTKKANWSNFHEKMRQLIQEKQLTIENIKQINTIAEIEIAE
FT                 NKYTNIIKTVCNQTIPKKKTQEKFTLPWWSDELAAMKREVATRKRRIRCAA
FT                 PIRRSRVVEEYLKLKQEYELKAASAQIESWKNYCHRQDKEGVWEGIYRVIG
FT                 RVTKREEDLPLEKDGNILDAKQSVKLLSETFYPKDSTDGDNDYHRQIREEA
FT                 EKVNCGKQNNNIFEPQFTMSELKWASNSFNPKKAPGADGFTADICHHAINS
FT                 SPHVFLTLLNKCLEQSYFPKAWKEATVVVLRKPGKESYTNHKSYRPIGLHT
FT                 ILGKIYEKMLISRVKYHLIPRTSTRQFGFMPQRSTEDSLYTMMQHISNKRK
FT                 EKKIVTLVSLDIEGAFDCAWWPAIRVRLAQENCPLNLRKVMDSYLTDRKVR
FT                 VRYAGEEHSVNTSKGCVQGSIGGPVLWNLLLDPLLKSLDTQKVYCQAFADD
FT                 VVLVFDGDTALEIENRANAALEHVQEWGINNKLKFAPQKTKAMVITRRLKY
FT                 DIPRLNMGGTVIPMSEDIKILGVTVDNKLTFNAHVSNVCRRAIEVYKQLAR
FT                 AARASWGLHPEVIKLIYTATIEPIVLYAASVWVSAVAKLGVIKQLAAVQRG
FT                 IAQKVCKAYRTVSLNSALILAGMLPLDLRVREAASLYEAKKGQLLPGLADA
FT                 EIEQMTPFAEMPHPVERADLQIVCLEDQEQVDGNSDYDECIFTDGSKIGGK
FT                 VGAALSIWKGDTETKTRKLALSNYCTVYQAELLALCVATTEVRKSKSKSFG
FT                 VYSDSMSALQTITNYDSPHPLAVEARQNIKASLLQGKAVTLHWIKAHAGLK
FT                 GNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMTTLEEWNRRYTTGET
FT                 ASVTKLFFPDALVAYRIVRKIQPSNILTQIMTGHGGFSEYLCRFKCKESPS
FT                 CICDPAVKETVPHVLVECPIFAQARHDIEQKLDVKIGLDTLHEIIIDTNRN
FT                 QFLKYCIAIIGIVIKRNK"
XX
SQ   Sequence 8005 BP; 2785 A; 1569 C; 1779 G; 1868 T; 4 other;
     cccagtctgc cgtggccctc cgcagcgaac acgcgcgtcc caagttgctc cgcagtgatt        60
     tacgctcgaa aaatcattaa aaattccgaa aagtggtgaa aagtgtacca aaataacagt       120
     gcgatacacc aaaatttgtg gaaaagtgcg gcgaacctgt tggtgaaact ttattttgga       180
     tcgcagtgaa atttggacga ttttccgtgg aaaaactcgg aaattgcaga attcgaaact       240
     ttgaccgcgt gcgccgcggg ttttatcgct gtgacataca gtttttctac tgctgtcctg       300
     acgggcttgt tgaaccctac aatccaatac caaatttgga atttttcggc cagagacggc       360
     cgagaaatca ccgaaaaaaa caaaaaccac gtggcacgtg gtcagtgatc ggcggccatt       420
     ttggaaattt tgaaaatagt gactggagga ggcagacaag agaagcccag aaccgtttca       480
     agacctgaaa aaagttaagg cgtttttaag ttattgaatt ttgaaagttt ggcaatattc       540
     gaaattttct atctttttat aacgatcgat aacatatagt tttttcatag tcatattaaa       600
     gcttacatac acctgcaaca ttgttgaaaa aatcagaaat ttctatcaga aaattccgga       660
     gaaaataatt tttcaaaatt tttcaaattt tcaattgcat ttaaaaaata attattaaaa       720
     atctagaaca tattaattta aatattattg tagagttaaa aatttagcat aactttgacg       780
     ccttatttga aattattgga ccgaaattgt acttttataa tcactttaag gaaaaaattt       840
     attactttta agaatattaa atcggacgtc ggttggtttt tattgttaaa taaatattcg       900
     tgaccctgag agaagccctt acaaaacgaa cccaaactcg actagtttcg gaccactttt       960
     tgaatttttt aatttttggc ttattttatt tgtgtttgta ttattaagta ggaactttaa      1020
     aaatttagaa ctgtacatac tttggctgtg cgtgttgtgt atgtcttaga ataggttatg      1080
     aatttgattg attcgtgaat cacttgtatt tttgacccgc atcgaaagcg gaacaatata      1140
     aaacatttat cttaagccgt aagaaaccga gcgaacttgt cgaccaatag aacagcgcgg      1200
     cggtgacgtg atatcgatgt tgtttacatg caggtgagcg gatgagtcac gcgccgcacc      1260
     atctggtccc gtcttttgtt tctttatgtt ttacaacatt taaatttgaa gtaaaataac      1320
     atcgaacata acacagccag cgtattgaat agcgaataga acgaaataga acgaaattga      1380
     atgcttggtt tggttacttg ctgtcactga cttagctgtg catatttagt gcataataat      1440
     attagtttta gtgtgaatgt gaaatacatc actgtattac ttagaaattg tggacagtgt      1500
     gtaactgagc tgacgttatt gttttgtttc gtcttgtttt ttctctaatt tttattttgt      1560
     atcactattt tattttttat atatttcata ttataattca gaactgcgaa taatttaatt      1620
     gtgtctgtta tgttttaaaa ttttttaaca gtttgactgc ttattttagt tagttggtca      1680
     atatcgaaag cnnaatnant taaattaaat cattatatat aatatacaca cacacacaca      1740
     cacacacata cacacacaca cgcgcacaca cacacacaca cacacaagta aataaataaa      1800
     taatttctta ccgacatccg acgagtccag tactcgtgta gtctgacgaa atctgcaaca      1860
     aaaaacagag acataaactt tcatatgcag agtacagctc ctgtaaagta aaataaaata      1920
     tttaaaaaaa tagaaagtta catatacatt tcaataagac atatctatct gggtagtata      1980
     gacagcacgg gtttatattc gactgaccct attgggcaaa taaacaagcc ttttttgggc      2040
     ggaataagtg tgttgcgacg acttaattat tattaagcta agtaagacat tgacaattat      2100
     ttttacaata tatacatttt acacatttac acctatacat ttatttaagc cataggacaa      2160
     ctttccccga tatactcgca taacacatta cattgcatca tactaactaa ctgggctgaa      2220
     tcactatcgg actagacagt cgttcgctag aaatacttca acacctctga caacatgttc      2280
     ggaatacgat cccccgtcca gaaaagcgat gacgagtgat aaatcacccc gaaaccctaa      2340
     atccccagaa ggcggcgaga gacgcagcat aggcttgaga atagatgaat gggaaacctc      2400
     caaaggtaaa accatcccat catccactaa gttagccgcg cagactgtcg tagccgccaa      2460
     accaacaact tcgcaagccg gcaaaacaac aagtccaggc caatgccagg acagatctgc      2520
     ggaagcaaaa gcctgccttt taaaggccaa gctgcactta agcaactccg ggaatattaa      2580
     aagagaaata aaaatcgagg ttacagcggc acttgacaaa ctttaccaat tggtgaagga      2640
     tgccgaaatg gaccggaaaa aagggaaatc gaaagaagag aagacgggtg atgtggggca      2700
     aagagcgact gataggacct ttacggtaag cccaatggac gcgaatattt atgtagccaa      2760
     aatggaggag cacgccaagc tcttgcaaga gagtaaaaaa atgatgggag acctgaagga      2820
     agcaatggag aaagcaacag tgacagcagc aacgtacgcc agcgtagccg cgatacagcc      2880
     agctgctaca aatgagaagc ctgaagttat gaggcaaaca ctgcactccg tcgtgatcac      2940
     ctcaaaggac gaatgtgaga ctggggaaaa ggtgctcgac agagtaagaa aggcagtaga      3000
     tgcaaaagag ggatggatag aggtaaaaaa cgttaggaag gcaaaagata gaaaagttat      3060
     cataggccta ggtaccaagg cggaaaggga caaattaaaa aataggttgg agaaggcgga      3120
     gactcagctc cacgtcgagg aagtggaaaa ccgggatccc ttaatgatgc ttaggagtgt      3180
     tcttaccata cattcggatg aggacatcct taaagctctg agaaaccaaa atcgagatat      3240
     tttccgcgac ctctgcgagg gagaggacag agtggtgatc cggtacagac ggagggcgag      3300
     aaacccacac acaaaccacg tggtggtcag cgtctcgccc accgtctggc aaagagcaac      3360
     cggaaaagga agcgtgcaca tagatctgcg aaggattaaa gtagaagacc aatctcctct      3420
     ggtgcaatgc acgcgctgcc taggctatgg acacagcaag agattttgcg tcgaatctgt      3480
     agacctgtgt agccattgcg ggggtccgca tttgaaaact gaatgttctg actggttggc      3540
     taaggtacca cccaaatgta ggaattgcac aaaggcagat atagataacg cagagcacaa      3600
     cgcttttgac tcgaactgtc aggtgaggaa aagatgggat gatttggccc gatcgactgt      3660
     agcgtattgc taagggcagc caggaggatc aagtccctta tcgggtagta caagcaaacc      3720
     tccaaagaaa taaactagcg acaaacgagg ttcttgtgga ggcggcaagg ctcaaaatcg      3780
     ccgtgggcct tctacaggaa ccatatgtgg gtggggcgaa agaaatgaaa actcaaaggg      3840
     gaatgcgtgt gttccaaaac gctgatgtga gtggtgggac tgtaaaagca gcgatagttg      3900
     tattcgacca taacatcaac gtagtgcagt acccgaaact caccaccaac aacatctgcg      3960
     tggtggggat caacaccagc gcgtggagca tcacgctagt ctccttttat ttcgagccag      4020
     accatcccat agagccctat cttgaacatc tagggaaaat caaagaagaa ataggaagaa      4080
     gcaaaataat ctacggagga gactcgaacg caaagagcac ctggtgggga agccctagca      4140
     tagataacag gggtacaagt atgttgggaa cactggagga actggaactg aacatattaa      4200
     atacagggga aattccgacc ttcgacacga ttaggggagg aaagcgctac aaaagttatg      4260
     tcgacgttac agcctgctca acagacttga tggatctggt gagcgactgg agagttgatg      4320
     aaggactgac gacctcagac cacaacgcca tcctatttaa tattcataca aaacgagcaa      4380
     taggaataaa aatacaaaga accacaagaa tatacaacac aaagaaagcc aactggtcaa      4440
     attttcatga gaaaatgcga cagttgatac aagaaaaaca attgaccatt gaaaatataa      4500
     aacaaataaa tacaatagca gaaattgaaa tagcagaaaa caaatacaca aacataatta      4560
     aaacagtatg taaccaaacc atacctaaga aaaaaacaca agaaaaattt accttgccgt      4620
     ggtggtctga tgagctagcc gcaatgaaac gtgaagtcgc caccagaaag cgcagaatcc      4680
     gatgcgctgc gccaatccga aggtcacggg tcgtcgaaga gtacctgaaa ctaaaacaag      4740
     aatatgagtt aaaagcagct agtgcccaga tagaaagttg gaagaactat tgtcatagac      4800
     aagataagga aggagtgtgg gagggaatct atagggttat tggaagagtg actaaacggg      4860
     aagaagactt gccactggaa aaagacggaa acattctaga tgctaagcag tcagtcaaat      4920
     tgttgtcgga gacattctat ccaaaggatt ctaccgacgg cgataacgac taccatcgcc      4980
     aaatcaggga agaagccgaa aaagtgaatt gtggcaagca aaataataat attttcgaac      5040
     cgcaattcac catgtcagaa ttgaaatggg caagtaactc cttcaacccc aaaaaagcac      5100
     ccggagcaga tggctttaca gcggatatat gtcatcatgc cataaacagt agccctcatg      5160
     tatttctcac gctcctcaac aaatgtctgg aacaaagcta cttcccaaag gcctggaagg      5220
     aagctaccgt ggtggtgttg cggaagccgg gtaaagagtc atacacaaac cacaagtcgt      5280
     atagaccaat cggtttgcac acaatactgg gcaaaatata cgaaaaaatg ctgatttcac      5340
     gcgtaaaata ccatttgatc ccaaggacaa gcacaaggca gttcgggttc atgccacaaa      5400
     ggagcaccga ggactccctc tataccatga tgcaacatat ttctaacaaa aggaaggaaa      5460
     agaaaatagt aacgttggtg tcattagata tagagggagc ctttgattgc gcctggtggc      5520
     ctgccatcag agtccgatta gcccaggaaa actgtccact gaacctgcgg aaagtaatgg      5580
     acagctatct cacggatcga aaagtccgag tcagatacgc aggggaagag cacagcgtga      5640
     ataccagcaa aggctgtgtg cagggctcaa tcggtggccc tgtgctgtgg aacctcctgt      5700
     tggacccact cctgaaaagt ctggacaccc aaaaagtgta ctgtcaggca ttcgcagacg      5760
     atgttgtcct tgttttcgac ggagacacgg cgttggaaat tgaaaaccgg gccaatgcgg      5820
     ctctcgaaca tgttcaggaa tggggtatca ataacaaact gaagttcgca ccacaaaaaa      5880
     ctaaagctat ggtcattaca aggagattga aatatgatat cccacggctg aacatgggcg      5940
     ggacagtcat tcccatgtct gaagacatta agattctagg ggtaaccgtc gacaacaagt      6000
     tgacatttaa cgcgcacgtc tcgaatgttt gcagaagagc gattgaggtg tataaacaac      6060
     tagccagagc agccagggcc agttggggtc tacaccccga ggtcattaaa ttaatatata      6120
     ccgccaccat agagcccata gtcttgtacg ccgccagtgt atgggtatcg gcagtcgcca      6180
     aactgggcgt aattaaacaa ttagccgctg tgcagagggg aattgcacaa aaggtatgca      6240
     aagcgtatcg caccgtatct cttaactcag ctctgatcct agcgggtatg ctccccctag      6300
     acctccgagt tcgtgaggcg gcctcattat acgaagccaa gaagggacaa ctgctgccgg      6360
     gactggctga cgcggagatt gagcaaatga caccttttgc agagatgcca caccccgtgg      6420
     aacgtgcgga tctgcagata gtctgcttgg aggaccaaga acaagtcgac ggtaacagcg      6480
     actacgacga atgtattttt acagacggaa gtaaaatcgg aggcaaagtg ggggccgcgc      6540
     tgtcgatttg gaaaggggac acagagacta agacccgcaa acttgccctg tcaaactact      6600
     gcacggtcta ccaagcagag ctgctggcac tgtgtgtggc gacgacggaa gtcaggaaga      6660
     gtaaaagcaa atcttttgga gtttatagcg attccatgtc ggccctccaa accataacaa      6720
     actatgatag cccccatcca ctggcagtcg aagctagaca aaatattaaa gcctcgttac      6780
     tccaaggcaa ggctgtcacc ttgcattgga taaaagctca cgcagggctg aagggcaatg      6840
     agagggccga cggacttgca aaggaagccg ctgaaaactc caggaaaaga ccagactacg      6900
     atcgctgccc gatctcattc gtcaagcgaa gcctacgaat gaccacgctt gaggaatgga      6960
     accggcgcta tacaactggc gagacggcat ccgtcactaa gttgtttttc ccagatgcat      7020
     tggtggcgta cagaatagtg agaaagatac agcccagtaa catactcaca caaatcatga      7080
     cggggcatgg cgggttctcg gaatacttat gtcggtttaa gtgtaaagag agcccgtcat      7140
     gcatttgcga cccagcagtg aaagaaaccg ttcctcatgt gctggtggaa tgtcccatct      7200
     ttgcacaggc tagacatgac atcgagcaaa agctggacgt aaaaattgga cttgacacgc      7260
     tgcatgaaat aataatagac acaaatagaa atcagttttt gaaatactgc atagctatca      7320
     ttggaatagt aataaaaaga aataaataga aaataaagta tgtttacaat aatattaaga      7380
     tatattagat ataagcatac aatatattaa gcaaaaacaa aagtatatat atacgcagta      7440
     aaaataagaa aacaaaggaa atgggcttga cataaattaa aacttacctt cctcttctcc      7500
     tgtccagctc cctggaaaat aaaattaaaa ttgaaaagta ttgttagaat agaactagaa      7560
     gagaaatgta acaaataaca tagaaaaaag tagaataagc acgtaatata ataagcaata      7620
     gaataagaag ctaaaatgta aaccatagga ataagataat aatattgaaa ttgttaaaat      7680
     tatataaaga taagatccaa atagtataag cttcaaaata gacataagtt tcaaacaata      7740
     tttttgtaat tgatttatga ataaatgagc aaaatgctat ttaccccgaa aaataaaaca      7800
     atagtaggtt aaagtagcgg gagtcccacc cggctaagta tgacagatga tgaatgcaag      7860
     aaagaaacag tatgaagcat gaaagtgcga gaagcataaa agagagaact agaatgaatg      7920
     agtaacttag actaaaaaag acccggtgat ctcacgatcg gggaaaggca ttaaaaaaaa      7980
     ataaaaaaaa aaaaaaaaaa aaaaa                                            8005
//
ID   TRAS3_SC    repbase;    DNA;    INV; 1923 BP.
XX
AC   AB046673;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   30-JUN-2010 (Rel. 15.07, Last updated, Version 3)
XX
DE   Samia cynthia TRASSc3 gene, non-LTR retrotransposon, partial cds.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   endonuclease domain; reverse transcriptase domain; TRAS family;
KW   TRAS3_SC.
XX
NM   TRAS3_SC.
XX
OS   Samia cynthia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Saturniidae; Saturniinae; Attacini; Samia.
XX
RN   [1]
RA   Kubo Y., Okazaki S., Anzai T. and Fujiwara H.;
RT   "Structural and phylogenetic analysis of TRAS, telomeric
RT   repeat-specific non-LTR retrotransposon families in Lepidopteran
RT   insects.";
RL   Mol. Biol. Evol 18(5), 848-857 (2001).
XX
DR   Genbank; AB046673; Positions       1    1923.
XX
SQ   Sequence 1923 BP; 445 A; 473 C; 591 G; 414 T; 0 other;
     gggactgtta aagcggctat cgttgtttat ggagataagt tcggggtcac tgttgatccc        60
     ggactcgtcg acaaaaacat cgccgctgca gtgctgcacg cgggccacct gtcgctaggg       120
     gtgatctccg tctacttcga gccgaacgaa cccatagaga cgtacattgt acgacttgag       180
     agaatctgcg acaaattagg agcgctgaac ctgataatcg gtggcgacgt taatgccaaa       240
     agcctgtggt ggggatccag ttccgaaggt cataggggtg aggcgtaccg ctcctttctg       300
     gatgccactg gactgcagat cctcaatgaa ggcgacttac ccacattcca ggtcgttagg       360
     gggggccgct tgttcacaag cattgtagac gttaccgtct gcagccccac tctcctcggc       420
     aggatcgatg actggaaggt cgatatgaat ttaacatctt ccgaccataa ctccatcacc       480
     ttctcgatac gcgtggacca gcctctgcct agtcagaggc cggtcactac gcgtatctac       540
     aacacaaaga aggttgtatg gtcggaattc atatccacat tccaagagaa actgtccgag       600
     aggagtctga cggcatgtaa tgtggataag gtcgaggaca ttgagggtct ggagacagtg       660
     gtgtccgatt acgtcatctg cattgaggaa gcctgtaata aggtagttcc caaggcaggt       720
     ggcgtaaaga aagtggcacg tccaccctgg tggtctgaag atctggaccg cctaaaaagg       780
     gaggcgacgc gacggaagcg caggatccgc tgcgccgccc ctagcaggag gcagtacgtc       840
     gtcaaggatt atcttgatgc tcttgagttg tacaagaggc aggcagcgga cgcccagacg       900
     aggagctgga aggagttttg tacgacacag gaaagggaga gcctctggga cggaatctac       960
     agggtactta gacggacaga gcggagacgt gaggaagtgc tgctcaagga ccccaacggg      1020
     gtcattcttg acccgcaggg gtccgtggag cggctagcct ccgtgctctt tccggaggat      1080
     actgtagagg atgaaacaga ggatcaccgg gccgtgaggg aaggaacgga ggggatcctc      1140
     ccggccgata ttcgggggct atccgcggac gatccgccgt ttacccggga agaagtgatg      1200
     cgggtgtgta aagagattca cccgctgaag gctcctggga acgacggatt aaccgcggac      1260
     atatgcacac gtgcgattct agggggggga gaggacgtgt tcctggctct tgcaaacaag      1320
     tgcctggagc tgtctcactt ccctagaccc tggaaggtag cccacgtgtg catactccgg      1380
     aaacccggca gggaggacta ctgcgaccct aagtcgtacc gcccgatcgg cctacttcct      1440
     gtgttgggaa agctcctgga aaagctcttc gtccgacgtt tacgctggca tctgctgcca      1500
     aaactcagcg tgcgccaata tgggtttatg ccccagcgtg ggacagagga ctcgctctat      1560
     gatctggtga atcatatcag gacccgtgtg gtggccaagg aggtcgttac cctggtatcg      1620
     ctagacatag agggggcctt tgataacgct tggtggccgg gcttgaagtc ccaactcata      1680
     gccaaggagt gcccaaggaa tttgtacggt atagtctctt catacctaga ggaccggaga      1740
     gtagagctca attacgccgg tataaaggtg agtcgggaaa gttccaaggg atgtgtccag      1800
     ggttctatag ctggaccgtc cttttgggac gttatcctag actccctttt ggtggagctc      1860
     gactccgcgg gagtgtactg tcaggctttt gctgacgacg tggtcctggt tttcgacgga      1920
     gac                                                                    1923
//
ID   TRAS4_SC    repbase;    DNA;    INV; 1920 BP.
XX
AC   AB046674;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   30-JUN-2010 (Rel. 15.07, Last updated, Version 3)
XX
DE   Samia cynthia TRASSc4 gene, non-LTR retrotransposon, partial cds.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   endonuclease domain; reverse transciptase domain; TRAS4_SC.
XX
NM   TRAS4_SC.
XX
OS   Samia cynthia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Saturniidae; Saturniinae; Attacini; Samia.
XX
RN   [1]
RA   Kubo Y., Okazaki S., Anzai T. and Fujiwara H.;
RT   "Structural and phylogenetic analysis of TRAS, telomeric
RT   repeat-specific non-LTR retrotransposon families in Lepidopteran
RT   insects.";
RL   Mol. Biol. Evol 18(5), 848-857 (2001).
XX
DR   Genbank; AB046674; Positions       1    1920.
XX
SQ   Sequence 1920 BP; 763 A; 332 C; 434 G; 391 T; 0 other;
     gggactgtga aagccgctat agcaatattt gatgaaagat tgagtattat agagcattct        60
     cagctaacaa cgcacaatgt agcagtagcc acacttgaca caggacacac aaaaattggt       120
     atcatatcgg tctattttga ggacaccaaa ccattaacgc catacttgga caaaataaaa       180
     acaataatag aaaaattgga cacaaaaaaa gttattatag gaggggacgt aaatgcctgg       240
     agtagttggt ggggaagtag gagagagaat gatagggggg aagagataac gggatggatt       300
     acagaagaag gatatcatgt cctgaatcaa ggtagtatac cgacatttta cacgataaga       360
     ggagggaaag agtaccagag ctgtgtggac atcacgatct gttcagacca aatactaagt       420
     aagatacgtg gctggacgat tgaccaggaa ttggtaaatt cggaccataa ttgcattaaa       480
     ttccaaataa taacaggaga gctaaaaaca agaacacaga aaaagacaac aagaatatat       540
     aaaacacaaa aagcgaagtg gacagatttt agattaacga ttagtaaaaa aatagaagca       600
     aacaaaataa caactaatgc aatcagagaa attacagaaa cacaagaatt agatagtata       660
     atagaaaaat acaacaacat tataacacag gcatgtaaat taaatatccc taaaataaat       720
     agaaatacaa ctaataaaca aaaaaataac ttaccgtggt ggaccgtcga gttggaggaa       780
     gaaaagagga gagtacttac gatgaagcga agaatccgtt gcgcagcaca gcaaaggaag       840
     tcccacgtcg tcgaagaata cctgaaaagg aaagaaaaat atgagttagc agcaaatgaa       900
     gcacgtacaa atagctggag agaattttgc accaagcaga aaagggaaac aatgtgggag       960
     ggtatatata gagtaatccg gaaagcagcc ccacaatacg aagaccagct actgagccag      1020
     aacggacaga acctaaatcc ggaagattcg gtaaaactgc ttggtgcaac cttctttcca      1080
     gacgactgta ccacagatga tacggtagaa catacaaaaa taagggatga tgcgaaggta      1140
     accaacatag aagtcgatga tacggaagat gaccctccaa taaccgaagc cgagatgatc      1200
     cacgcagcac gatcatttaa caaaaagaaa gcacctggaa aagatggatt cactgcagat      1260
     atctgtttta acgcaataaa agccaacagt gagacattcc tggaaataat aaataagtgt      1320
     atggaattgt catggtatcc gacatcgtgg aagagtgcat tcatactaat tttgcggaaa      1380
     ccaaataaag ctagttacga aaacccaaga gcatacagac cgataggatt gctgccagtg      1440
     ttagggaaga ttatggaaaa aataatagta aaaagaataa gatggcacac agcaccgaaa      1500
     ttgaatccac gacagtacgg gtttacacca cagcgctgta cggaggactc cctctatgat      1560
     ctaatgacac acatcatgaa caacttaaca cagagaaaga taaacattgt tgtgtcgttg      1620
     gacatagagg gggccttcga cagcgcgtgg tggcccgtgt tgaagtgtag attaaaagaa      1680
     ctaaaatgtc ctaggaatct caggaaaata gtagacagct acctagacaa tagacaggtt      1740
     gaaatgaatt atgcgggagc ctcatacagt aaaataacga ccaaaggatg tgtacaggga      1800
     tccatcagcg gcccagtttt ctggaatata ataatagacc cacttataga tcgattggca      1860
     gacaaaaaca tttattgtca ggcgttcgcg gacgatgtgg tcctggtttt cgacggagac      1920
//
ID   TRAS6_BM    repbase;    DNA;    INV; 5858 BP.
XX
AC   .
XX
DT   15-NOV-2021 (Rel. 9.06, Created)
DT   15-NOV-2021 (Rel. 26.11, Last updated, Version 3)
XX
DE   Non-LTR retrotransposon from the domestic silkworm genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   endonuclease domain; reverse transcriptase domain; TRAS6_BM.
XX
NM   TRAS6_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Kubo Y., Okazaki S., Anzai T. and Fujiwara H.;
RT   "Structural and phylogenetic analysis of TRAS, telomeric
RT   repeat-specific non-LTR retrotransposon families in Lepidopteran
RT   insects.";
RL   Mol. Biol. Evol 18(5), 848-857 (2001).
XX
RN   [2]
RP   1-5858
RA   Kojima K.K.;
RT   "Consensus update.";
RL   Direct Submission to Repbase Update (15-NOV-2021).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. Experimental evidence.
XX
FH   Key           Location/Qualifiers
FT   CDS           258..1700
FT                 /product="TRAS6_BM_1p"
FT                 /translation="MFGLGLRTPVKRQESHKSPPKVIVRKSIDRWEAAERS
FT                 EELTAKTCPEITKTNATTQAGPAETTKAATKPAENITAARRASTGNDESPK
FT                 KFYVSRAAEAAACLNKAKAHLRASRNLKTEIKEGVEKALTRLLELVKEAEK
FT                 ELKTKGSTTVRGVRAFDAPPCSSAPSPSSTSNESLIMARLEEHTNLMQESG
FT                 RRMEELKATIERHAEKMEKIETPTYAGVTATQSDRALQKRTLHSVAVTSTV
FT                 ETETGEEVLERVRRTIDAKEGWVKVERVRKAKNRKVIMGFESKEERDKIKD
FT                 RIGKEGGSLTIEDVENKDPLVRLGDVLTVNTDEDILKALRNQNGAVFRGLE
FT                 EGEDRIVVKYRRKARNPHTNHVIISVSPSVWRRVTEMGYVYIDLQRVRAED
FT                 QTPLVQCTRCLGYGHSRKYCHETADACSHCGGPHMRTECADWLAGGSPACR
FT                 NCRKAKLTQIEHNAFSSECPVRRRWDELARSTVAYC"
FT   CDS           1693..5367
FT                 /product="TRAS6_BM_2p"
FT                 /translation="RIVNAKVVTTKYSFIQANLQRKKLATNELLVEAEKRG
FT                 VAVALIQEPYVGGGKALRSHRGVRIFQDTGGDGTVKAAIVVFNNDFKVIQY
FT                 PKLITKNIMVVGIQTVAWEITLVSFYFEPDSPIEPYLEHLKRIELEIGSIK
FT                 LLVGGDTNAKSSWWGSPIIDHRGEDLSGTLEEMGLHILNAGETPTFDCVRG
FT                 GKRYTSYIDITACSVDLLDLVDGWKIDEGLTSSDHNGIVFNIRLQRSKGIN
FT                 ISRTTRKFNTKKANWPKFHEKLSQLMQENKLTAAEINNINTIEQLEKTINT
FT                 LTKTIDNTCTISIPIKQTKEKLTLPWWSEKLAGMKKEVATRKRRVRNAAPI
FT                 RRSKVVEEYLKKKEEYEEEAAKAQTDSWKDFCCRQDREGVWSGIYRVISRT
FT                 TTREEDSILVKDGEFLDAKGSAKLLADNFYPEDLRTNDNAYHRQIRSEANI
FT                 VNVGKQTEYCDPPFTMAELRQASGSFNPKKAPGMDGFTADICCHTIEANPE
FT                 LFLSLLNKCLELYHFPMAWKVATVVMLRKPGKGDYTTPKAYRPIGLLPILG
FT                 KIYEKMLVTRLKFHLLPRMSTRQYGFMPQRGAEDSLYILMQHIRKKLKEKK
FT                 IIALVSLDIEGAFDSAWWPAIRVRLAEEKCPVNLRRVIDSYLSNRKVVVKY
FT                 AGEEHDKGTNKGCVQGSIGGPILWNLLLDPLLKSLENSGEYCQAFADDVVL
FT                 VFDGETGEEVQRRANDTLGRVQAWGVNNKLKFAPHKTSAMIITRKLKYDTP
FT                 RLDMGGVVIGMSKEIKLLGVIIDHQLTFNAHVSSVCRKAMGIFKQLSRAAR
FT                 VSWGLHPEVLRVIYVATIEPTVLYAASVWAPATAKLMVIKQLATLQRGIAQ
FT                 KLCKAYRTVSLNSALVLAGILPLDLRVREAASLYEAKRGVPWPALGDGEVE
FT                 RMASAIEAPHPAEHEDLNIVSLANQEQMKEHNCYDVRIFTDGSKIEGKVGA
FT                 ALSIWSREAESKALKLALPKYCTVYQAELLAICKATKEILGHKASTFGIFS
FT                 DSMAALQTIKNPGCPHPLAVEARDNLRSISLQNKVVTLFWIKAHVGLDGNE
FT                 RADQLAKEAALKSKKRPDYDRCPVSFVKRSIRMATLDEWNRRYQAEETAST
FT                 TKLFLPDAKAAYKVVRKFVPTQLTTQILTGHGGFSDYLNRFKCKESPSCVC
FT                 DSVQAETVQHLLLECPIHINERFELEQTVKQNLTLETIQELISGKNRELFI
FT                 KYCIKIVERVINRNK"
XX
SQ   Sequence 5858 BP; 1904 A; 1258 C; 1501 G; 1187 T; 8 other;
     cgagtccagt actcgtgcag tctgacaaat ctgtaacaaa aaaaaaaaaa aaaaaacttt        60
     tatcttgcta cttatcacga cttatttgac tgaccctatt gggcaaataa aatcttttct       120
     gagtactgac aagtcagtga ctcatcctat acatattgac taccgttttc tctgttattt       180
     taacggttac aacaaaaggg gcagctcctt ttacaacttt tacaaaactg tctgcccctc       240
     cgcaccacat tgtcaaaatg tttggacttg gactccgcac gcctgttaaa agacaggaga       300
     gccataagtc acccccaaag gtgatcgttc gcaaaagtat agacaggtgg gaggccgctg       360
     agcgaagcga agaactgact gcgaaaacat gtccagaaat aacaaagacc aatgcgacaa       420
     cgcaggcagg ccctgcagaa acaactaagg cggccaccaa gccagctgaa aacatcaccg       480
     ccgcgcgcag ggcatcaacg ggaaatgacg agtcccccaa aaaattctac gtcagcagag       540
     cagcagaggc ggcagcctgt ctgaataagg cgaaggccca tttgagggcc tcacgaaacc       600
     tcaagacaga gataaaagag ggggttgaaa aggcactcac acgactactt gagctagtca       660
     aggaagctga aaaagagctc aagacgaagg gaagtacaac ggtgagggga gtgagagcgt       720
     ttgatgctcc tccttgcagc tccgctccct ctccctcctc tacctccaac gaaagcctaa       780
     tcatggcacg tttagaggaa catacaaacc tgatgcagga aagcggcagg agaatggaag       840
     aactgaaggc gacgattgaa aggcatgccg aaaaaatgga aaagatagaa acgcctacct       900
     acgccggggt gaccgcgacc cagagcgaca gggcgctgca aaagcgcacg ctgcactcgg       960
     tcgcggtcac ctcgaccgtg gagacggaaa caggagaaga agtgctcgaa agagtaagga      1020
     ggaccataga cgctaaggag ggatgggtaa aagtggagag ggtaagaaag gccaaaaata      1080
     ggaaagtaat aatgggcttt gagtctaagg aagaacgaga taaaataaag gatagaatag      1140
     gaaaagaagg tggcagcctc accatcgagg acgtggagaa caaagatccg ctggttaggc      1200
     ttggggatgt actgacggta aataccgatg aggacatcct caaggctctt cggaaccaga      1260
     atggggctgt tttccgcggc cttgaggagg gggaggacag gatagtagtg aaatatagaa      1320
     ggaaagccag aaaccctcac actaatcacg taattattag cgtctcgccc agtgtctgga      1380
     ggcgggtaac ggaaatgggc tatgtctata tagatctcca gcgggtcaga gcagaagatc      1440
     agaccccgct agtccagtgc acgcgctgcc tggggtacgg ccacagccgt aagtactgcc      1500
     atgagactgc agatgcatgc agccactgcg gcggccctca catgagaacg gagtgcgcgg      1560
     actggctagc tggggggtca ccggcctgca gaaactgcag aaaggcgaaa ttaacgcaga      1620
     tagagcacaa tgccttcagt tctgagtgcc ctgtacgccg ccgctgggac gaactggccc      1680
     gttcgactgt agcgtattgt taacgccaag gttgtcacca caaaatacag ctttattcaa      1740
     gcgaacctcc agcgcaaaaa gctagcaacc aacgagctac ttgttgaggc agagaaacgc      1800
     ggagtagctg tagcactcat acaagaacct tatgtgggtg gagggaaggc gttgaggagc      1860
     catagaggcg tcaggatctt ccaggacact ggtggagatg gaaccgttaa ggcagcaata      1920
     gttgtcttca acaacgactt caaagttata cagtatccaa aactcatcac caaaaacatc      1980
     atggtggtgg ggatccaaac ggttgcttgg gagatcacac tagtctcctt ctactttgag      2040
     ccggactccc ctatagaacc ctacctggag catctgaaaa ggatagagct cgagattggg      2100
     tctataaaat tgctcgttgg aggagatacg aacgcgaaaa gctcgtggtg gggaagccca      2160
     ataatagatc ataggggtga agacctttct gggacgcttg aggagatggg cctacatata      2220
     ctcaacgcag gagaaactcc gactttcgac tgcgttcgag gaggcaagcg gtatacaagc      2280
     tatatagaca tcaccgcgtg ttcagtcgac ctactagact tggtggacgg ctggaaaatt      2340
     gacgaaggtc tcacgagctc ggaccacaac ggtattgtat ttaatattcg gctacaaagg      2400
     tcaaaaggca ttaatatctc aagaacaact agaaaattta acacaaaaaa agcaaattgg      2460
     cctaagtttc atgagaagct tagccaatta atgcaagaaa acaaactaac agcagcagaa      2520
     ataaataaca taaacactat agaacaattg gaaaaaacaa taaatacact taccaaaaca      2580
     atagataata catgtacaat ctcaatacca attaaacaaa caaaagaaaa acttaccttg      2640
     ccgtggtggt ccgagaaact agctgggatg aagaaggaag tcgccaccag gaaacgtaga      2700
     gtgcgaaacg ccgctccaat tcgtaggtcc aaggtcgttg aagagtacct aaaaaagaaa      2760
     gaagagtatg aggaggaggc agccaaagcg cagacagata gctggaaaga tttttgttgt      2820
     aggcaagaca gggagggggt ttggagcgga atatatagag taatatcgag aacgactact      2880
     agggaggaag actctatact ggtaaaggac ggagagttcc tggacgcgaa ggggtccgca      2940
     aagttactag cggataactt ctatccggag gatctgagga ccaacgataa cgcctatcac      3000
     cgccagatta gaagtgaggc taatattgtg aatgttggta aacaaactga gtattgcgac      3060
     ccacctttca cgatggccga attgagacag gcgagtggat ccttcaaccc aaaaaaggcc      3120
     ccgggcatgg acggtttcac tgcggacatc tgctgccata ccatagaagc caatccagaa      3180
     ctctttttgt cgttgctcaa taaatgcctg gagctatatc atttccccat ggcttggaag      3240
     gtagctacag ttgtaatgct gaggaagcca ggaaaaggag actacaccac tccaaaggcg      3300
     tacagaccaa ttggactact gcctatacta ggcaagattt acgaaaagat gctggtgacc      3360
     cgcctcaaat tccatctatt accaaggatg agtactcgcc agtacggatt catgccacag      3420
     aggggtgccg aagactccct ctatattctg atgcaacata tccgcaagaa gctaaaagaa      3480
     aagaaaataa ttgcattagt atcgctggat atagagggag ccttcgacag tgcctggtgg      3540
     ccagcaataa gagtccgact ggctgaggaa aagtgtccag taaatctgag gcgggtcata      3600
     gacagctatc ttagtaacag gaaggtggtg gtcaagtacg ctggggagga acatgataag      3660
     ggaacgaata agggatgtgt tcaaggctca atcgggggcc caattttgtg gaacctgctg      3720
     ctcgaccctc tcctgaaaag tctcgaaaac agtggagagt attgccaggc gtttgcagat      3780
     gacgtcgtct tggtgttcga cggggagact ggggaagagg tgcagagacg tgccaatgat      3840
     accctcgggc gtgtccaggc gtggggggtc aacaacaagc taaagtttgc cccgcacaag      3900
     acaagtgcaa tgattattac aaggaagctc aagtatgaca ctcctcgcct ggacatgggc      3960
     ggtgttgtta ttggtatgtc aaaagagatc aagctgttgg gagtcataat cgaccaccag      4020
     cttacattca acgcccacgt ctcgagcgtc tgcaggaaag ccatgggcat atttaaacag      4080
     ctatcgagag cggctcgagt aagctggggg cttcacccag aggtcttaag agtgatatac      4140
     gttgccacca tagagccaac cgtactgtac gctgccagcg tctgggcgcc ggccacagcc      4200
     aagcttatgg taataaagca gctagcaact ctccagcgtg gaattgcgca gaaattgtgc      4260
     aaagcctacc gcacggtctc cctgaactcg gcgctggtgc tcgctggaat actccctctt      4320
     gacctccgag ttcgtgaggc ggcttcactg tatgaagcca agaggggtgt tccatggccg      4380
     gccctcgggg acggggaggt cgagcggatg gcttctgcaa tcgaagcccc acacccggcc      4440
     gagcacgagg acttaaatat cgtaagcctg gcgaaccaag agcaaatgaa agaacacaac      4500
     tgctatgacg tgcgtatatt tacggacggg agcaagattg agggcaaagt cggagccgca      4560
     ctatccatat ggagtcgcga ggcagaatcc aaagccctca agcttgctct accaaaatac      4620
     tgcacggttt accaggctga actcctggcc atatgcaagg caacaaagga gatcctcggg      4680
     cacaaggcgt ccacgtttgg gatatttagt gactccatgg cggcccttca aactattaaa      4740
     aaccccggtt gcccccaccc cctcgctgtg gaagccagag ataatttgag atccatatct      4800
     ctccagaaca aggtagttac tttgttctgg ataaaggctc acgtggggtt ggatggtaac      4860
     gagagggctg accaactagc gaaggaggct gccctgaagt caaaaaagag accggattac      4920
     gatcgatgcc ctgtttcatt cgtcaagcgt agcattcgta tggcgacgct tgacgaatgg      4980
     aaccgcaggt accaagcgga agaaactgcg tcaacaacaa aactcttcct cccggacgcg      5040
     aaggcggcct acaaagtggt gcgaaaattc gtaccgacac agttgactac acaaatcctg      5100
     acggggcacg gtggattttc cgattatctt aatcgtttta aatgcaagga gagtccatcg      5160
     tgcgtctgcg actcagtcca agcggaaaca gtacaacacc tgcttttgga gtgtccaatt      5220
     catataaatg aaagatttga actcgagcaa acagtaaaac aaaacctgac acttgagacg      5280
     attcaggagc taatctcggg aaaaaataga gaactattta taaaatactg tataaaaatt      5340
     gtagaaagag taataaatag aaacaaatag cctaagaaag ttatgtttac ataatataat      5400
     gttaatatta agataaacat aaaaatataa agtaagtaaa tagtatagtt aaggaaatgt      5460
     aaaaatagta ataagataaa taagtataaa acaaaagtga cgccctgtgt tgttgtctgt      5520
     gttttttatg tgtgttttat atgtgtgtaa tgtaaaaatc aacctgccct tgtatcccta      5580
     agaaaataga ttattataat tagcgtagct agtaagcgta gctgggaatc ccacccagaa      5640
     aaagtaatga aagatatgat gaatgcagaa agaaagatgg tatgcggcat gaawgtgcga      5700
     gmggaaaamt wgcgagaact ggaatgagaa agagaactwg gtttagmaca ggctccgatm      5760
     acgtcggagg tagacagtat atttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5820
     aaaaaaaaaa aaaaaaaaaa aaaaamaaaa aaaaaaaa                              5858
//
ID   TRAS9_SC    repbase;    DNA;    INV; 1908 BP.
XX
AC   AB046675;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   14-AUG-2009 (Rel. 14.09, Last updated, Version 3)
XX
DE   Samia cynthia TRASSc9 gene, non-LTR retrotransposon, partial cds.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   endonuclease domain; reverse transcriptase domain; TRAS9_SC.
XX
NM   TRAS9_SC.
XX
OS   Samia cynthia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Saturniidae; Saturniinae; Attacini; Samia.
XX
RN   [1]
RA   Kubo Y., Okazaki S., Anzai T. and Fujiwara H.;
RT   "Structural and phylogenetic analysis of TRAS, telomeric
RT   repeat-specific non-LTR retrotransposon families in Lepidopteran
RT   insects.";
RL   Mol. Biol. Evol 18(5), 848-857 (2001).
XX
DR   Genbank; AB046675; Positions       1    1908.
XX
FH   Key           Location/Qualifiers
FT   CDS           307..1905
FT                 /product="TRAS9_SC_1p"
FT                 /translation="MGLEILNTGTTPTFEVLRGDRLYTSCIDVTACSGSLL
FT                 GRVEDWRVDRGLTTSDHNTITFSLRVERALTPLPSITTRKYNTKKANWTDF
FT                 GRLFGAMLEENNISESIRKSRTPEDLEIAIQAYTSAIHEACSTTIPQARPW
FT                 KGNPVPPWWNRQLEDLKREVLRRKRRIRNAAPLRKQFVIDEYLRAKLEYAA
FT                 EARKAQTESWKEFCSTQKRESMWDKIYRVIRKSSRRQEDVLLRDQVGNTLS
FT                 PQQSAELLAKSFYPDDLEASDDQYHKDLRTTVEVGQSGFFSEDDPLITSTE
FT                 LDTVLRAQNPKKAPGPDGLTSDICTAAINCDRVVFLALANKCLALSHFPRA
FT                 WKVAHVIILRKPGKDDYTSPKSYRPIGLLPVLGKIVEKLIIGRLQWHIMPA
FT                 LNRRQYGFMPQSSTEDALYDLVHHIRTELQDKKSVLVISLDIEGAFDNAWW
FT                 PALKLQLQERRIPRNLYKLVDSYLRDRKITVNYARATYEKGTTKGCVQGSI
FT                 SGPTFWNIILDPLLQLLAREGIHAQAFADDVVLVFDG"
XX
SQ   Sequence 1908 BP; 544 A; 474 C; 503 G; 387 T; 0 other;
     gggactgtta aagcggctat catcgttttc ggtgacctac tgaacgtcat tcatgaccct        60
     cagctggtga ccgagaccga ggcggctgtc ttgctggaag ggggaggcct gaaacttgga       120
     gtagtgtccg tctaccttga gggaaacaat gacatcgagc cctacctaca taggataaag       180
     ctgacctgcg gaaaactcga caccggacac ctcatcgtgg caggggatgt aaatgcctgg       240
     agccactggt gggggagcag ctcggaggac ggcagaggcg tagcgtacca ttccttcctg       300
     aacgaaatgg gactggaaat cctaaacact ggaaccactc caacattcga ggtccttagg       360
     ggtgacaggt tgtacacaag ttgcattgat gtaacagcgt gcagcgggtc actcctaggg       420
     agggtcgagg actggagggt cgatcgagga ctgacaactt ccgaccataa tactattacg       480
     ttttcactgc gcgtagagag ggcactgaca cctttgccct caatcaccac gcgcaagtat       540
     aacacgaaga aagcaaattg gacggacttc ggtcgactct ttggtgccat gttggaggaa       600
     aataacatct cggagtccat taggaaatcc agaaccccag aagatcttga gatcgcaata       660
     caagcctaca ccagcgcaat ccatgaagcc tgttccacaa ccatcccaca ggcaagacca       720
     tggaaaggaa atcccgttcc tccctggtgg aataggcaat tggaagacct caagagagaa       780
     gttcttagaa ggaaacgaag aataaggaac gccgcgccgt tacgtaaaca atttgttatc       840
     gatgagtacc tccgagctaa actggagtac gctgcggagg ccaggaaagc ccaaacagag       900
     agttggaagg agttctgctc gacgcaaaag agagagagta tgtgggacaa aatctacagg       960
     gtcatcagga agtcgtcaag gaggcaggag gacgtgctcc tgagagacca ggtaggtaac      1020
     accttgtccc cccaacagtc ggcagaactt ctcgccaaat ctttctaccc agacgacttg      1080
     gaagcttccg acgaccaata ccacaaggat ctcaggacaa cggtagaagt tgggcagtct      1140
     gggtttttct cagaggacga cccccttata acatctacgg aactggacac agtgcttagg      1200
     gctcaaaatc cgaaaaaagc accgggtcca gatggtctga cctcggatat atgtacggcg      1260
     gcaatcaact gtgatcgggt ggtgttccta gcgctggcca acaagtgcct agcgctgtca      1320
     catttccccc gagcatggaa ggtagcgcac gtcattatcc tgagaaaacc gggcaaagat      1380
     gactatacca gccctaaatc ctatagacct ataggccttc taccagtcct agggaaaatt      1440
     gtggaaaaac tgatcatagg tcgcctccaa tggcacatta tgccagcctt aaaccgtagg      1500
     caatacggtt ttatgccgca aagcagcacc gaggatgccc tctatgactt agtacaccat      1560
     attaggacag agctgcagga caaaaagtca gtgctcgtca tatcactgga catagaggga      1620
     gccttcgaca acgcatggtg gccagctcta aaacttcaat tgcaggagag gaggattcct      1680
     cgaaacctat acaagctggt ggactcgtac cttagagacc gcaagatcac ggtcaactat      1740
     gcacgagcga catacgagaa gggtactacc aaaggttgtg tccaaggttc cataagtgga      1800
     cccacctttt ggaacatcat actcgacccg ttgttgcaac tacttgcaag ggaagggatc      1860
     cacgctcaag cttttgcaga cgacgtggtc ctggttttcg acggagac                   1908
//
ID   TRIM        repbase;    DNA;    INV; 3111 BP.
XX
AC   X59239;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   25-OCT-2011 (Rel. 16.10, Last updated, Version 2)
XX
DE   D.miranda retrotransposon TRIM.
XX
KW   Loa; Non-LTR Retrotransposon; Transposable Element; LINE;
KW   I factor; TRIM.
XX
NM   TRIM.
XX
OS   Drosophila miranda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RP   1-3111
RA   Steinemann M.;
RT   "TRIM.";
RL   Direct Submission to Genbank (15-APR-1991)M. Steinemann, Institut
RL   f Genetik und Mikrobiologie, der Universitaet Muenchen,
RL   Maria-Ward-Str 1a, D-8000 Muenchen 19, FRG.
XX
RN   [2]
RP   1-3111
RA   Steinemann M. and Steinemann S.;
RT   "Preferential Y chromosomal location of TRIM, a novel
RT   transposable element of Drosophila miranda, obscura group.";
RL   Chromosoma 101(3), 169-179 (1991).
XX
DR   GenBank; X59239; Positions       1    3111.
XX
CC   Original classification of TRIM element as LTR retrotransposon
CC   [1]
CC   has been changed to a non-LTR retrotransposon [Kapitonov,V.V.].
CC   TRIM is 65% similar to the internal part of non-LTR
CC   retrotransposon BILBO.
CC   There are about 50 copies of TRIM element in the D. miranda
CC   genome [1].
XX
SQ   Sequence 3111 BP; 796 A; 870 C; 789 G; 656 T; 0 other;
     attctcggac cacaggtacg tggaaactgt cttctccttc tcagtaccga agccagtccg        60
     attccggaac atcaggcgga caaactggac tcggtactct gattacctct gtcgtgttct       120
     ccctgagccc ccatctgagg aggagttctc cacggaggcc acgactcgtc ttcttaagat       180
     ctttaccgac gcctgcaata aggcgctcga caaagcatgc ctctctggca agaacagagg       240
     ccggaggaaa cctgaatggt ggaatccgaa actgggtgaa ctccggaaag cctcccggag       300
     actcttcaat aaagctaagg ctgaaaacgt tgagcaaaac tgggccgaat acaaggccag       360
     tctgtcaacc tacaacaaag aacttagaaa agctaaacgc gcctcctggc gtaagttctg       420
     cagcgaaatc gagagtaact cagaagcctc acgcttgcgc agagttctct cgaagacaac       480
     acccaccctg ggctacttga agaacaccga ccagtcgtgg actacgtcca gcgaggagtc       540
     gctaaatctt ctcctaaata cccacttccc tggctgcgat gaaaacagac ccaactacct       600
     cgcgcctcct tctgtcgcct caaatgccat cctgagactg ctaagccagg agaacatttc       660
     ctgggcgatc agaagcttta aaccctacaa gtccgcgggg ccagacggca tttttcctgc       720
     ccaactgatt cacgcgggat ataaagccat taactggctc aaaataattt acgagggaat       780
     cttctcctga cacctggctt cagaccaaag tcgtattcat acccaaggca ggcaagccct       840
     cgcacactgc cccaaaagat ttcagaccca taagtctatc gtcttttctt ctaaaggcga       900
     tggagctgct cctggggctg catctaacgg cgtgcattcc gtccagtctg atctcagact       960
     cccagcatgc ctatcggaag ggaagatcca ccgaaacggc cctacactca atcacatcga      1020
     tcatcgaagc gtcccttaat tttaaggagt acaccctagt agccttcctc gacattaaag      1080
     gcgcctttaa caacatcctt ccgaccgcca tcacgggcgc actgacggat ctgggcgttg      1140
     actccaggac ggtgagcctg atcgatcaga tgctacaatg caggacggtt gaggcatcac      1200
     tggggacgct aacgtgtacc agatttgtca gcagaggcac accgcagggc gagtcctctc      1260
     gcccctccta tggaacgtgg cagtgaacac actgctgcgg gagatagagg ggggtggctg      1320
     ccgtgtggtg gcgtacgcgg acgatgttgc catagcattc tccggaaaat ttccgcagac      1380
     gttgtgtgag tgcattacaa gtactctcac gaaaatgtcg aatgggcaga caaatgcggg      1440
     ttaggcgtca acccgtctaa aacggaactg gtgcttttca ctaggaagta caaagttccg      1500
     gtactgattc cgccaagact atgtggggaa acgctagtct tcagcaacaa cgccaagtat      1560
     cttggcctaa tcctcgatag aaagctcgat tggaaattga gcatagagga tagagtaaag      1620
     aaggccacag tggccctcta tacttgcagg aaagccatcg gactaaaatg gggaatgacc      1680
     ccctatatag ttcggtggct ctacaccgcc atcatacgac caatcatgct ctatggagtg      1740
     gtggtatggt ggccagcctt ggacagaagg acatgcctca ataaactcag cagagttcaa      1800
     cgcatggcag agctatgcat aactggcggg ctacgcacta ctccagggga agccctggat      1860
     actgtgctgg acctcctgcc tgtggatctc atgggaaaga aggtggcaac acttgccgcc      1920
     ctcagaatga gagaagccag actgtggaaa gcatccgcgg ttgggcactc gggaatcctg      1980
     atgagactcc cgcaattacc agagaggaca gattactgta tccccagtga tcacctctcg      2040
     acgcccttcc aggtatcaat cccatctagg gaggactggg agatgggcga accaggacct      2100
     gcaaatgcgg tccacttcta cactgatggc tcaaagctag acggccgcgt gggaggcgga      2160
     gtctactgca gcgagctgga aatcagtcat tgcttcaggc tcccggacca ctgtagtgtg      2220
     ttccaagcgg agattgaagc catcaaggag gccatttcta tagtctccaa actacgtcta      2280
     gacacgcact tagtgtgcgt tttctcggac agccaagcgg ctattaaagc tctaggctca      2340
     atatcgtcga actcagcgac tgttaaagac tgccgcagat ctctgcacga gatcgcagag      2400
     cagttggatc tcttccttat atgggtcccc ggccacaggg acatcgaggg gaacgacgcc      2460
     gccgacgagc tagccaggca gggtactacg atccctctcc tatcggagag ggagcaggta      2520
     gcgatgccct tagctacgtg caggctccta acgcacgaat tgttcgagca aaatgccaat      2580
     agaagatggc agcaaaccgt ctcctgtaaa gtctcaagat tgatatgctc atatcgatcg      2640
     aagaagcgct cagcagagct gtacagactc agcagagcac agtgttttgc agttactcga      2700
     gccattacgg gacactggca gatcggcact catgcctcca gactgtcaat ccctcataac      2760
     gacttctgca ggagttgtcg cgacgaggag gaggaggaat cggtcctcca cttcttctgc      2820
     cattgcccag cccttggaaa tcgtcgtctt cgtattctcg gggccgcttt ccttgcggac      2880
     atttcgggcc tgtccgaaat caaaccaggg accttgtcca aatacatcca agccaccgga      2940
     tgggactgcc cttaatcctg cagtagtctg ctctcacggt tcaggcaacg agaaggggca      3000
     catgcccatg cggcaacaca acggaccttc tataggtcca agtgagcttg ggggcgggag      3060
     gctcttatcc cccccctcgg cctaccgcct taacctaacc taacctagtc c               3111
//
ID   tRNA-1_RPr  repbase;    DNA;    INV; 85 BP.
XX
AC   .
XX
DT   01-AUG-2012 (Rel. 20.10, Created)
DT   01-AUG-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   tRNA sequences: consensus.
XX
KW   tRNA; Multicopy gene; Nonautonomous; tRNA-1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-85
RA   Bao W. and Jurka J.;
RT   "tRNA sequences from insects.";
RL   Direct Submission to Repbase Update (01-AUG-2012).
XX
DR   [1] (Consensus)
XX
CC   99.5% identical to the consensus.
XX
SQ   Sequence 85 BP; 15 A; 21 C; 29 G; 20 T; 0 other;
     gggggcgtag ctcagatggt agagcgctcg cttagcatgc gagaggtccc gggttcgatg        60
     cccggcgcct ccaagttaaa ttttt                                              85
//
ID   TSESSEBEII  repbase;    DNA;    INV; 2026 BP.
XX
AC   U89802;
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Anopheles gambiae transposon Tsessebe II.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; TSESSEBEII.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-2026
RA   Grossman G.L., Cornel A.J., Salazar-Rafferty C., Robertson H.M.
RA   and Collins F.H.;
RT   "Tsessebe, Topi and Tiang: Three distinct subfamilies of Tc1-like
RT   transposable elements in the malaria vector, Anopheles gambiae.";
RL   Unpublished (2005).
XX
DR   EMBL/GenBank/DDBJ; U89802; Positions       1    2026.
XX
CC   The coordinates are based on imperfect TIRs determined during
CC   annotation for RU (by JJ).
XX
FH   Key           Location/Qualifiers
FT   CDS           1089..1652
FT                 /product="TSESSEBEII_1p"
FT                 /translation="MFSDEEDWRRVLWSDESKFNRQGSDGRRLVRRPVNCA
FT                 LDPKYCFKTFKHGGGSLMVWGCFSYYGMGPLVRIHGNLNRFGYRDILDTHL
FT                 LSHARKNLPRSWMFMQDNDSKHTSGTVQTWLADNNVKTMKWPALSPDLNPI
FT                 ENLWAIFKKRLGKNIPEDLDHLFDHMQEVWSKIPPETIQNLVMSMRQRD"
XX
SQ   Sequence 2026 BP; 566 A; 461 C; 481 G; 518 T; 0 other;
     tacagtatcg acattaagat agaaccctgg tgttttcaac gcaccgtgca ctttgttttc        60
     aacgcaccgt gcacttgttt tgccacgtta cttgtgtttg tgtgtgtgtg tgtgtgtgtg       120
     tgtgtgtgtg tgcgttcggg tttttgtgtg aagaaacgta gcttgacatg gtttcatatt       180
     gcgtggcaag cattctgttt atgtgtgtta tcatgtgaaa cagcgtgtgt ttacacttgg       240
     ataaaagcta aagtttgcat cgacagcagc gcttgttcct cggacgagaa cgcaggtgtg       300
     ctgtttcatg aatgtgaatc gacaccggtg cgaaatgaaa acgcgcacaa taacaatgaa       360
     cttggcattc cctcacagtt gtttcaccag tgcacgccat tgaaaggcat gcgtgcatct       420
     ctgcgttaaa cgttgtgtgc gcatgggaaa ctttgtgtgt gcattgagca agagcgcagg       480
     tgttcttttc aatgggcgtt tttcgttggc ctgttctggt tttgaatggg tagatgctca       540
     ctcgcttact cattgatagt ttttatcaat acgctttttt gctgctcgac aacgatgtga       600
     ttcatcgcgt ataaaagcag aacgcaggca gtgcacggca tcagtcgtgt ccaagtttta       660
     accagtgtgt tcttgacggt ctaagcaagc aattttagta acaatgggtc gaggtaaaca       720
     ttgtaccgat tatcagcgcc atatcattaa gcgaatggcg gctgctggca ttaagcgcag       780
     aacgatcgag ttcgtgatgg aacgatcgcg cacctttgtg gcaaacgcgc ttcggacaac       840
     cgaaacgcgc aagtcacccg gacgtcctcg taagaccacg gaggaggaag accgtaagat       900
     cataaacatc gaagaaaaat ccgtttagct cggcaccaga gatccgaggc agactgaaat       960
     tgacggtgac gccgagaaca gttcagcgaa gattggtcag tgccgggcta ctcgcgcgag      1020
     tgccacgcaa agtgcccaat ttaacacctg cgcataaaaa cgcacgggtg ttatttgcaa      1080
     ttgagcacat gttctccgat gaggaggatt ggcgcagggt tttgtggtca gacgagtcga      1140
     aattcaatcg acaggggtcg gacggacgca ggttggttcg gcgccctgtt aattgtgctc      1200
     ttgatccgaa gtactgcttc aaaactttca agcatggcgg tggtagtctc atggtgtggg      1260
     gatgcttctc ctactatggg atgggtccgt tggttcgaat ccacggtaat ttaaatcggt      1320
     ttgggtatcg agatattctt gatactcatt tgctatcaca cgctaggaaa aaccttcctc      1380
     ggtcttggat gtttatgcaa gacaacgatt ctaagcatac ttccgggact gtccaaactt      1440
     ggcttgctga caacaatgtc aaaacaatga agtggccagc ccttagcccg gatctcaatc      1500
     ccattgagaa cctctgggca attttcaaga agaggctggg taaaaacata ccggaagatc      1560
     tggatcatct cttcgatcac atgcaagagg tgtggagcaa aattccacct gaaacgatcc      1620
     agaatctggt gatgtcgatg cgtcaacgcg attaatgtca tcaagggcga cggcaataag      1680
     atcaaaaact gagcttattg catttttgaa tagggatcac tgctcgcgag ggcgtggtcc      1740
     tgcaaattac aacaaaaacc taacccaaaa cacaaaaaaa ctactgacaa atctatccga      1800
     aacgacctac ttgtgaaaca aacacacaca tcaatacaca ttcaaacata catacacaca      1860
     cacacacaca cacacagatg catacacaca cacacattta cacacacaca tacacacaca      1920
     tgcacacaca cacacaaaca caaacacaca aaccacacat aaacctgatc caacggtgca      1980
     tgctgcgtta aaacactagg gtcctatcat tctgttcgat actgta                     2026
//
ID   TTAA10_AP   repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA10_AP.
XX
NM   TTAA10_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-168
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2075-2075 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 168 BP; 42 A; 27 C; 42 G; 57 T; 0 other;
     cacgttgatg gacacgccat gccatagcat tctatgtgta ttggtcttgc cggtgcatga        60
     ctgctatagc atttgttttt gtaaatgttg atttagggtt aaaaatttag tgatgctaaa       120
     aggtcagaaa tgtggtgcca tgctatagca gttgtgtcca tcaacgtg                    168
//
ID   TTAA11_AP   repbase;    DNA;    INV; 374 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA11_AP.
XX
NM   TTAA11_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-374
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2076-2076 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 374 BP; 120 A; 78 C; 72 G; 104 T; 0 other;
     cacgttgacc gccaccggcc gccggcggtc acacgattat gcatcatctg tacgccaagt        60
     atatttttca gtgtcattcc aaatttgtat attatactac gtatttgaaa aaaagtttaa       120
     aaatataaaa aaaatttaaa aaatacattt attacatcaa aaaatttgta atgattcccg       180
     ctacgccacg gcactttttt gggtgcatta ttgtagcgcc atggaaaagt taataatata       240
     aaaccatatt catttatggc cgccggcggt catgtggcgt agtagtaatg atcaactgtg       300
     gccgccggcg gtcacaaaaa catacaattt gaaatttaca aatgaccgcc ggcggccaca       360
     tggcggtcaa cgtg                                                         374
//
ID   TTAA12_AP   repbase;    DNA;    INV; 590 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA12_AP.
XX
NM   TTAA12_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-590
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2077-2077 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 590 BP; 191 A; 90 C; 98 G; 211 T; 0 other;
     gggggctgga gcgtaatcaa ttctaaggag taaaaactag gcattttata tttctgttta        60
     tctgggtctt gtgtatgtgt tgaaagtaaa tgaacattag tgtacgtaat tcgtagtact       120
     gatcacgttt tataggggca tcatagtgac cgggatgtac gtctgtaatt ttacctacgc       180
     gcatgcacat gtcaccatat attgctttat aaaatgacaa acattttttt tcaaaaaata       240
     ctacctctga cttcaatcac tacgctcagt aggatgttcc gattttaatt ttgaaagcag       300
     atttgaattc tcctctaaat ttactatgct ttaactgtcg tacatttttc atattctata       360
     tcaatgtatt taaatttgaa ttatgaatat gatctatttt tactcttttt gttagtaaat       420
     ttctaagtaa aaaaaaataa aaatcagaaa aatgaaattg tcaaagcata gataatttag       480
     tgacaaattc aaatttgctt tcaaaattaa tatcggaaca ttatattggg cgtagtgatt       540
     gaagtcgtga gctatgtttt cgaccgaaaa tgaatcacgc tccagccccc                  590
//
ID   TTAA13B_AP  repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA13B_AP.
XX
NM   TTAA13B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-595
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2078-2078 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 595 BP; 202 A; 99 C; 108 G; 186 T; 0 other;
     gggggctcca gcgtatcatg ttttaaggag taatatttag gcaattcaca tgacatgaac        60
     atttgggcta tgtctatgtg tgagtagtaa atgaacatta gtgtgtgttt ccgagaatcg       120
     ctgtaatgcc gcgtcgggca accgccgccg gatgcaactc tcgcacgcgc acgcacatgt       180
     caatacttcg cgaaaaatga aatatattct tgtttgcata actataaaaa ctactaaaag       240
     cggtagtaaa ttaaacatac ttcctgaagt tcgattgtaa tttcgaaaaa atggttgaat       300
     ttataagctt ctagactatg ctctttagga atcacttttt tgatttaaaa tcagatgtgc       360
     ccaaaataaa tacaaatgta atgcaattat ttcatgggat ttttgaaaaa aaatcttaat       420
     tttaaggtcc tttaaaattg aaaattgaaa atcgacttcc taaaaagcct agatattttg       480
     tcaaagagtt catacatgta taaaaaatta aaatcggaca ttccgaagta ttatgtgtaa       540
     tttaccaccg cttattggtc taaaacgtat gaaaaatacg tgtgctgcga tcccc            595
//
ID   TTAA13_AP   repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA13_AP.
XX
NM   TTAA13_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-574
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2079-2079 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 574 BP; 202 A; 98 C; 104 G; 170 T; 0 other;
     ggggattgaa ggcggtgatt taataagggg tcgcgtatag gcaattcgat gtcttatact        60
     cgttacgcag tgtggttgtg tgcgaagtaa atgatcatta gtgtgcgtag atacgttcgg       120
     aatccgtcgt gtgccactct cgcacgcaca cgcacatgtc aataaatcga gaaaaacgaa       180
     atatattctt ctatgcatca cctataaaaa ctaccaaaag cggtagtaaa ttaaacatac       240
     ttcctgaagt ttgattgtaa tttcgaaaaa aagggttgaa ttcgtaagct cctagactat       300
     gctttgtagg aaccactttt ttgatataaa acccaaaaag cccaaaataa atacaaatgt       360
     aatgcaatta tttcatgaga ttttttaaaa aaatatccaa attttatggt cctttaaaat       420
     tgaaaattga aaatcgactt cctagaaagc ctagttattt tgccaaagaa ttcatacata       480
     tattaaaaat taaaatcgga cattcggaag tatgtgtaat ttaccaccgc ttattggtct       540
     aaaacgtacg aaaaatacgt gacatgcgat cccc                                   574
//
ID   TTAA14_AP   repbase;    DNA;    INV; 552 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   14-FEB-2022 (Rel. 27.02, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA14_AP.
XX
NM   TTAA14_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-552
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2080-2080 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 552 BP; 176 A; 87 C; 90 G; 199 T; 0 other;
     ggggcctcgc tacggtcatt atttaagggg caacatttag gcaatttcta atcttgtcat        60
     agccgcccgg gatctatgtg ttagttgtaa atgattatta gtgtgagtga aattaaatgc       120
     gggtatcctc tctcgtacgc gcatgcacat gtcaataact cgataaccat atcaatttca       180
     ctacacgaat tttacaaaaa catacatttg ttttgacaaa attaaagtta gttaacgttg       240
     tctgattttg attctgaaaa aatatttgaa ttcagcagaa aaatgtctgt agatcgtacg       300
     aaacattttc cgtttttaat attaatttta attttaatta tgattcgaaa aagttcatat       360
     tttcaagttt tcaattacag ttcacaataa tataaaattt agtttttaca aagtgcttcg       420
     taggatctat agacaatttt ctggtgagtt caaatttttt ttcagaatca aaatcggaca       480
     acgttaacta actttaattt tgtcaatact ttaggtcttt tcagctaaaa ttgacggcag       540
     tagcgaggcc cc                                                           552
//
ID   TTAA15_AP   repbase;    DNA;    INV; 595 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA15_AP.
XX
NM   TTAA15_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-595
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2081-2081 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 595 BP; 195 A; 106 C; 119 G; 172 T; 3 other;
     gggggttcca gtcggtcatt ttctaaggag taagaattag gcaaattatg tggcaagtan        60
     aaccgngcca tgtcaatgtg tgcgagtgta aatgaacatt ggtgtgtgtg ggcacacacc       120
     gcagtgtatg tcaacgcgta gcgacccgca tncacattct aagaaccggc gttctcgcac       180
     tcgcaggcac atgtcaatat attaaattgg gaaaaaacta tacggttaat tttcgagtaa       240
     aaacatacct cggctctgac aaaattgtga gacttaggtt ggtccgattt cgattctgta       300
     acaatcctaa caactattaa cacgtcctct aaagaacggt cgaagaattt tttagaaatg       360
     ttaatttctt caatacatat ggttgaacaa aaatgttgta aaaactgaaa tttgtataat       420
     attataatat tgtcaaaagt tcaaacttta aaaaaaagct ccgaccgttc tctagaggag       480
     atgttaagaa atgttattat ttttacagca ttaaaatcgg accatctaaa gtctcacaat       540
     cttgtcagag cggagggtct aaaaacggtt atttttttga ccgactggaa ccacc            595
//
ID   TTAA16_AP   repbase;    DNA;    INV; 569 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   14-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA16_AP.
XX
NM   TTAA16_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-569
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2082-2082 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 569 BP; 170 A; 100 C; 107 G; 192 T; 0 other;
     ggggcctcgc catcgcattg atttaaggag aatcatttag gcaatttcta atctcgttgt        60
     cgccacccga gatctatgtg ttagtcgtaa atgattatta gtgtgtgtgg cgtccatgcg       120
     ggtcaattgt agcggtacgg agggctctca cacgcactcg cacgcacatg tcagtatgta       180
     atattgtgat catgaaaaaa tgtttatttt tcactcaaac acacgattct aattccaaca       240
     atacgtcgca acgattaact cgatttgcat tctgacaaaa tattcttttt ttccacaaca       300
     tctacgaggc atcggtcgag gtacattttt aaaattgtat ttagttaatt aaatatttaa       360
     gttggaaatt ctgaattttt ttgaattttt tacaattttt attgcatttt aaattacaaa       420
     aattaaaaat gtggctcgac cgtttccttg tatatattac ggacaatccg aatatttttt       480
     cagaataaaa atcgtgataa ttgtcggcac gtaccgttgg aattagagac agtagttttt       540
     gacaaaaaaa gacgtggtag cgaggcccc                                         569
//
ID   TTAA18B_AP  repbase;    DNA;    INV; 576 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA18B_AP.
XX
NM   TTAA18B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-576
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2083-2083 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 576 BP; 191 A; 88 C; 94 G; 203 T; 0 other;
     ggggtatgca taccgaccgt ttctaaggag ttcaatatag gcaattttct atttgtgtgc        60
     atgcgggtcg tgtaaatgtg tgcgtagtaa gtgatcatta gtgtgagtga ctgtgtataa       120
     aataaatagc ggagcgcacc cgcacgtgca cgcacatgtc agtaacgcag cattttacac       180
     actaattatt acaaatgtga attttagtga aacactgaaa cttagtttcg tatttccaat       240
     aatatagctt actgagtgac attacagtat gaacacctat tatacaaatt gaagagaaga       300
     agtttatcta ggtttgtata tacggagtcg attttcgata ttttattttc aatgtccaat       360
     atttaactct aaaacttgtg atattttact ttttgaattt gaattattga gtttagtaat       420
     taaaatatcg aaaattgact tttatacaga catagattaa cttctcttct acaatattga       480
     taataggtgt atttactctc aaaccgctca ataaaccata ttattggaaa tacaaaaata       540
     cattttcata gaatttttca atactattca tacccc                                 576
//
ID   TTAA18C_AP  repbase;    DNA;    INV; 451 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA18C_AP.
XX
NM   TTAA18C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-451
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2084-2084 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 451 BP; 145 A; 78 C; 93 G; 133 T; 2 other;
     cccgtcgttg gtgacgctaa tgttttcaca tcattagtga cgtgttagcg tttcgctcac        60
     atttaattat ttttggaagg gtgaaattgg gaaaagtgga ctgactaatc tataagtaga       120
     cattacaacg aatccaaatc agttttaaaa actattatcg cattactagg tcgatcagta       180
     tgatggaaga aatattggta tgttttggct aaaataactg gccgccgtcg gaccgccgat       240
     ccccggcgag caaatactgg taaccgtcga catttgatgg taataagacg gaaagtttat       300
     atatagatta gxtattttcc acgtatttat ttccatxagt aacttgtatg agcatactaa       360
     aaatatcgat ataagcaaaa taatttgaag ccaatggttc ccaaaataac agttatgtga       420
     gcgaaatgct catagcgtca ccaacgacgg g                                      451
//
ID   TTAA18_AP   repbase;    DNA;    INV; 560 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA18_AP.
XX
NM   TTAA18_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-560
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2085-2085 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 560 BP; 175 A; 92 C; 114 G; 179 T; 0 other;
     ggggattgca aacggacagt ttttaaggag ttcaaaatag gcaattttca aattgtatgc        60
     atgcgggtct tgtaaatgtg tgcgtagtaa gtgatcatta gtgtgtgtga ctgtgtgtaa       120
     ataaaatagc ggagcgctcc cgcacgcgca cgtacaagtc accgcctcgg cgttgcgcgc       180
     gtgaacggta aacaatttat gctcatttgt atgtactttt tgtcaatcct accgatggac       240
     ctgataacgc gataagactt ctgaaaactg atttgaattc gttaatatgt ctacttgaga       300
     tcgatcaggc cacattttaa gatatttaat ttaattttcg aataatcaac atttaaaatt       360
     tcgtaaattt taaatattca aacaaaatgt ataggagttt aggaacaaaa ttttaaaaaa       420
     gtggcctgat cgatctcaag tagacatatt aacgaattca aatcagtttt cagaagtctt       480
     atcgcgttat caggtccatc ggtatgattg acaaaagatt ggtacatttt ggttgaaata       540
     attgtccgtt tgcaatcccc                                                   560
//
ID   TTAA19_AP   repbase;    DNA;    INV; 528 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA19_AP.
XX
NM   TTAA19_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-528
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2086-2086 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 528 BP; 182 A; 83 C; 80 G; 183 T; 0 other;
     gggggctgca gcagatgaaa aaaaagtgac ttttagacca ataagctaga caaaactgga        60
     agaatttggt ttgacagatt ttaattttga aaacggatta tgattgatca acaagtttac       120
     tagggaatga tcgaggcgat tttgaatatt ttttttttca gctgtgatat ccaagaataa       180
     aaatatcgaa aaaatatgat atttttgtat ttatattatt cattatgaca ctaacaataa       240
     ttggaatatt caaaatcgcc tcgatcattc cctagtaaac ttgttgatca atcataatcc       300
     gttttcaaaa ttaaaatctg tcaaaccaaa ttcttccagt tttgtctagc ttattggtct       360
     aaaagtcact tttttttcat tgactggagc cccctccagc ccccttaagg tttattttat       420
     gatacggaat ttaaatatat tgaaaaacat tataacaaac aaaattaatg tttagattgg       480
     tcaaatctac attagttttg atttttgaca aaacctgctg cagccccc                    528
//
ID   TTAA20B_AP  repbase;    DNA;    INV; 446 BP.
XX
AC   .
XX
DT   29-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA20B_AP.
XX
NM   TTAA20B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-446
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2087-2087 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 446 BP; 151 A; 68 C; 68 G; 158 T; 1 other;
     gggcgttgca tgcggcgatt ttctgtcttt gtctaacaca cgtggaacat aggaataacg        60
     acctaagcgc ctgacaaaaa ttaaggtact tctagttgtt cgatttaaaa aatgtaaaga       120
     tgtttgaatt ggtatacaag tttactttgc atcggtcgaa gcactttttc aattgtagca       180
     atattttgat gagaatttta aataaataat ttttatataa attttaaatt ttaaattttt       240
     nataatttta ttttataaat tatattaaaa aatattaaaa atatgcttcg accgatgcaa       300
     agtaaacttg tataccaatt caaacatctt tacatttttt aaatcgaaca actagaagta       360
     ccttaatttt tgtcaggcgc ttaggtcgtt attcctatgt tccacgtgtg ttagacaaag       420
     acagaaaatc gccgcatcca acgccc                                            446
//
ID   TTAA20_AP   repbase;    DNA;    INV; 663 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA20_AP.
XX
NM   TTAA20_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-663
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2088-2088 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 663 BP; 219 A; 112 C; 108 G; 223 T; 1 other;
     ggcccctgca aatgtgtcat ttttaaggag ttgtgtttag gcaattattt cgtttctgcg        60
     attactgatc gtcttagtgt gtgtagtaaa tgatcattag tgtgtgtata ctcccctacc       120
     atcacccgcg gaccgcatca atttacaata caagaattat atcacccgcg acccgcatca       180
     atttacaata cattgttatt tcttatctgg tttgtggtcg cacgcacgca catgcacaag       240
     tcatataatg tctatatcaa aatattcaaa accaatntat cgaaatattc aaaaccaatt       300
     tatggacgtg aaatagccgt cgcactgaca aaaattaagg tacttctagt ggttcgattt       360
     aaaaaatgta aagatgtttg tattggtaaa caagtttact ttgcatcggt cggagcactt       420
     tttcaatttt agcaaattct tgacgagaat aaatatttta cattttataa atttataaat       480
     ttttagtatt gaatatattc aaaaatataa aaaaataaaa aatatgctcc gaccgatgca       540
     aagtagactt gttgaccaat taaaacatct ttacattttt taaatcgaac cactagaagt       600
     actttaattt ttgtcagtcg ctaaggtcgt tttgatgaaa aaataatagg gtttgcaggg       660
     gcc                                                                     663
//
ID   TTAA21_AP   repbase;    DNA;    INV; 245 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA21_AP.
XX
NM   TTAA21_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-245
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2089-2089 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 245 BP; 91 A; 30 C; 34 G; 90 T; 0 other;
     ccctacactg catacaaggg catatatgca ttataacatt agatggttat gcacctaaag        60
     tatgttcgat taaagctaat gaaaacctgg ctatcatttg cttaaaccag tgtaaaaatt       120
     agtagttcgt aaaatttttt taaaatttaa aatttttttt tttatgattt ttcctaaaat       180
     tattgaatgg aactatataa catataattt ttttagcaaa aaaaaaaatg tcatgcagtg       240
     taggg                                                                   245
//
ID   TTAA22_AP   repbase;    DNA;    INV; 435 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA22_AP.
XX
NM   TTAA22_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-435
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2090-2090 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 435 BP; 146 A; 77 C; 74 G; 136 T; 2 other;
     ggggattggt ggcggtgatt tcctgtcttt gtctaacaca cgcgcaacat aagaatttag        60
     acgtgttttt tgtccaacgt accgattgat atagtgaagc gataaaaatt ctgaaaacag       120
     atttgaattt gtcgtcaagt ctacttgaga tcggtcagtc cacatatttt atattatccc       180
     ccaaaatcct aaaattattg tattattaaa gagtaattaa aaaaatttca tatttcattt       240
     tttggagaag tgtaaatcaa aaaatcaaaa atgtagactg accgatctca agtagacttg       300
     acgacaaatt caaatctgtt ttsagaatty ttatcgcttc actatatcaa tcggtacgtt       360
     ggacaaaaaa cacgtctaaa ttcttatgtt gcgcgtgtgt tagacaaaga caggaaatca       420
     ccgccaccaa tcccc                                                        435
//
ID   TTAA23_AP   repbase;    DNA;    INV; 586 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA23_AP.
XX
NM   TTAA23_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-586
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2091-2091 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 586 BP; 212 A; 81 C; 98 G; 188 T; 7 other;
     gggggttgga gcatagcata ttttaaggag taatatttag gcagttcata ttacacgtat        60
     atttgaactg tgtcattgtg tgagtagtaa atgaacatta gtgtgtcctt atcaatcatc       120
     aggctaatga caatggtaac gattctaaga acagtctcac acaagcacgc gcgtgctata       180
     agtttttnaa atcggtagta cacaanacag ctaaaagaga aagatttatt tagttacttc       240
     ccgtgacccg atttaaattt tgaaaaaaga tctgtattcg ataacttttt tactaggtta       300
     tgtaggaaaa ataattgatg ttttaaaact gnatgtaagt gtataaaaat aaatactttc       360
     atgatttttn aaaaagtaaa catattttta agccttattg aatanaaaaa tcaaaaatct       420
     gtttcctaca taacctagaa aaggggatga tgagttcata cgtanaanat aataatattc       480
     taatgagttc atacgtattt taaaataata atcggacatc gggtagtacg taaactaatc       540
     ttccgcttat tggtctaaaa ctacaaaaat atgtgctcca accgcc                      586
//
ID   TTAA24_AP   repbase;    DNA;    INV; 657 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA24_AP.
XX
NM   TTAA24_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-657
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2092-2092 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 657 BP; 215 A; 95 C; 123 G; 223 T; 1 other;
     gggggctgga gcataccatg ttttaaggag tagtgtttag gcatttaata ttacatgtac        60
     attttggctg tgtcaatgtg tgagaagtaa atgaacatta gtgtgtgtaa tccgttatcg       120
     cacttttcgc gacgaaattt gaattcccgg atttacgatt tattttgtat tgtcgtaata       180
     tttatcgtac taagattctt agaaatgttc taacacccat acgcgcatgc acaagtcaat       240
     gaacacgaag aaaatacttt tgctccggct gtagggcaga aatttgatgt aaacagtacc       300
     aaaagaggaa taaaaattca ccttgtttcg atcgacttat attagttttg aaaagatgag       360
     cgtattcgtt agtctatttt ctaggtttgc tcggaaatag atttacgact ttatttttag       420
     ttaatataat atgatgcata gtaagtttat atttttatca aaataaactt anacttgact       480
     tagttgtaga tagcgacgaa atgaaaaata taagaatcca cttccgagca aacttagaaa       540
     agaggaatac aaactaaatt tacttttcaa aattgaaatc gtgctactgg aagtatgttt       600
     aattttcttt cgcttattga gctaaatgta tggaaaaaaa tggttgctcc agccccc          657
//
ID   TTAA25_AP   repbase;    DNA;    INV; 512 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA25_AP.
XX
NM   TTAA25_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-512
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2093-2093 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 512 BP; 182 A; 83 C; 86 G; 161 T; 0 other;
     gggtgtcggt gccggtgcgt tttttggtac aaaaacatgt cttacaggaa aaactctcac        60
     gacctgtaga attgtcggat ttcgttaatt ttttttttat cttaaagtag agaacatttt       120
     gtaggtcgga tcaaagcccg attttgaaaa ctataattat agaaactgga atatgcattt       180
     gaaaaatgca taatatttgt cctttttcaa acgtattttt ctactactat tcaaagtaaa       240
     ataaaaaatc gagctttgat ccgacctgta gaaacttctc atctttcaga taaaaaaaaa       300
     attaacgaaa tccgacaatt ctacagggcg tgagagtttt tcccgtgaag tcattttcgt       360
     tgatataata caccgtatcg accccgtcta aataagtatc gagctgtaga ttagtggaaa       420
     agtattataa ttaaggcaat aactaaaata taaaacataa tattcaaata gcatagaaat       480
     ttcgaaaatt ggaaatactg gcaccgacac cc                                     512
//
ID   TTAA26B_AP  repbase;    DNA;    INV; 574 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA26B_AP.
XX
NM   TTAA26B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-574
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2094-2094 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 574 BP; 169 A; 95 C; 135 G; 174 T; 1 other;
     ggggatcggt ggcggacagt ttttaaggag ttcgaaatag gcaattttca aattgcatgc        60
     atgcgggtct tgtaaatgtg tgcgtagtaa gtgatcatta gtgtgtgtga ctgtgtgtaa       120
     aagaaatagc ggagcgttcc cgcacgcgca tgtacaagtc accgccxcgg cgttgcgcgc       180
     gtgaacggta aacaatttat gctcatttgt atgtactttt gttccatcct accgatcgac       240
     ctaataatgc gataattttt cagaaaactg atctgaattc gttataatgt ctacttgaga       300
     tcggtcagtc cacattttaa gatttctgat ttaaattccg aataatcaac gtttgaaaat       360
     tccgaaattt caaaatattc aaactaaatt tatagttgtt ggtggtgggg gagggggggg       420
     tgaaattggg aaaagtggac tgaccgatct caagtagaca taataacgaa ttcaaatcag       480
     ttttaaaaag tattatcgca ttactaggtc gatcagtatg atggaataaa gattggtatg       540
     ttttggctaa aataactgtc cgccaccgat cccc                                   574
//
ID   TTAA26_AP   repbase;    DNA;    INV; 581 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA26_AP.
XX
NM   TTAA26_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-581
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2095-2095 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 581 BP; 166 A; 102 C; 138 G; 169 T; 6 other;
     ggggatcggt ggtggnantt ntttaaggag ttcganatag gcaattttta aattgcgtgc        60
     gtgcgggtct tgtaaatgtg tgcgtagtaa gtgatcatta gtgtgtgtga tacgtgtccc       120
     gcactacaaa agcggagcct acgcacgcgg cgcgngcaca agtcaccgcc gcggcgtcgc       180
     gcgcgtgaac gatccagaac gtgtgtctta tttgactaaa agtatgtact ttttgtccat       240
     cctaccgatc gacctagtaa tgcgataata cttttgaaaa ctgatttgaa ttcgtcataa       300
     tgtctacttg agatcggtca gtccacattt taagatttct gatttaaatt ccgaataatc       360
     aacgtttgaa aatttcgaaa tttcaaaata ttcaaactaa atttatagtg gttggggggg       420
     ggggggtgaa attgggaaaa gtggactgac cgatctcaag tagacataat aacgaattca       480
     aatcagtttt aaaaantatt atcgcattac taggtcgatc agtatgatgg acaaaaagat       540
     tggtatgttt tggctaaaat aactgtccgc caccgatccc c                           581
//
ID   TTAA27_AP   repbase;    DNA;    INV; 289 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA27_AP.
XX
NM   TTAA27_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-289
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2096-2096 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 289 BP; 79 A; 57 C; 46 G; 107 T; 0 other;
     cacgttcgct gcggatgacg ccaaatggcg tcattttaca tagttcgcat atgctgaatg        60
     acgccaattg gcgtcattcc ccttgttatt aaatgcacta taatttggtc agcgttacga       120
     ttaaattttt tgtttttcgt cagcgtcttc tataagcatt ttttcataaa caagtgcaaa       180
     ccgtacaatg atattttaat ttttcaattt ttaggaattt tttttttaaa actccaattt       240
     tttcagcgtc acgcttaagt acacacaaat atcatccgca gtgaacgtg                   289
//
ID   TTAA28B_AP  repbase;    DNA;    INV; 318 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA28B_AP.
XX
NM   TTAA28B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-318
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2097-2097 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 318 BP; 95 A; 54 C; 52 G; 116 T; 1 other;
     ccctttgacg agtatggacg tatatatacg ttttgttgaa acgcgcctcg gggagtatgg        60
     acgtatattt acgttttaca caaaaacctt attttatcta taatgttatg tccgtattaa       120
     attgacgata atttatgaat cgtgtgctgc tatctactgg ctaggatagg acgtatattt       180
     acgtctttac taaaataccg atatcgtatt taagacgtaa atatacgtct ttactttaaa       240
     taattttatc caagttngtc attcctaatt cactctctgg gtgtaaacta tataaatcac       300
     aattcactct tcaaaggg                                                     318
//
ID   TTAA28_AP   repbase;    DNA;    INV; 316 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA28_AP.
XX
NM   TTAA28_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-316
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2098-2098 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 316 BP; 90 A; 59 C; 44 G; 123 T; 0 other;
     ccctttgagg agcatggacg tatatatacg ttttaaaata tactgtcaaa aagagcatgg        60
     acgtatatat atacgttttt accgcgaatt tcttttaatt tctttgttta tgtttcatta       120
     ccgtaaaata ccttatataa aatatgtgct gccatctgtg aagtttaatt tcaatcaatc       180
     gatttatttt catttatcaa tcctattaaa ataggacgta catatacgtc ttcgctcata       240
     attttttttc caatttttca ttcctaagcc gctccctgag ttgcatttac gtattccaag       300
     gctgctcctc aaaggg                                                       316
//
ID   TTAA2B_AP   repbase;    DNA;    INV; 426 BP.
XX
AC   .
XX
DT   24-AUG-2009 (Rel. 14.08, Created)
DT   24-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA2B_AP.
XX
NM   TTAA2B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-426
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1779-1779 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 426 BP; 133 A; 79 C; 83 G; 125 T; 6 other;
     gaggacgcta cacccgcgtg tgttgtctcc gtcttacaca cgcacgacat agcaaattgt        60
     cgttcactag tctcaatagt gngctgttag ttttgatact agagtgaatc gacctattat       120
     caaactttta ggtaagaaca ttatctgggt cttagcgtng gcgatttttc gatattttna       180
     ttttcgagcg agatangggt atgtgaaata tcaaaaatta aaaatgctca tatctcgctt       240
     gaaaattaaa atatcgaaaa aatcgccaac gctaaaacac agataatgtt cttacctaaa       300
     agtttgataa taggtcgntt cactctagta tcaaaactaa cagcacacta ttgagactag       360
     tgaacganaa tttgctatgt cgtgcttgtg taagacggag acaacacata cgggtgtagc       420
     gtcctc                                                                  426
//
ID   TTAA2C_AP   repbase;    DNA;    INV; 423 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA2C_AP.
XX
NM   TTAA2C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-423
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2070-2070 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 423 BP; 136 A; 75 C; 76 G; 134 T; 2 other;
     gaggacgtcg cacccgcatg tgttgtctcc gtcttacaca cgtacgacat agcaaatttt        60
     cgttcgctag tttcaatagg gtgctgtcan ttttgatatt agagtgaatt gacctattat       120
     caaactttta ggtaacaaca ttatctgtgt tctctcgttg gttttttacg atattttaat       180
     ttttaagtga gttatgagta tgtaaaacat taatatttga aaatgctcat aactcactta       240
     aaaattaaaa tatcgtaaaa aaccaacgag agaacacaga taatgttgtt acctaaaagt       300
     ttgataatag gtcaattcac tctaatatca aaactaacag cacnctattg aaactggcga       360
     acgaaaattt gctatgtcgt ccgtgtgtaa gacggagaca acacatgcgg gtgcgacgtc       420
     ctc                                                                     423
//
ID   TTAA2D_AP   repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA2D_AP.
XX
NM   TTAA2D_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-431
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2071-2071 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 431 BP; 150 A; 65 C; 69 G; 146 T; 1 other;
     gaggatgtca gcgcactatt tgttttctct ctctctgacc cacgcgcaac atagcaaatt        60
     tacgtttagc agaaccaacc ttgtgttatt acttttaata ttagagtgaa ttcacctatt       120
     atcaaacttt aaagttaaaa acattatctg tgtctctacg ttggctattt tatgatattt       180
     taatttttat gtaagttatg agcgtgtaaa ttattacaat ttaaaaatgc ttataaattg       240
     tataaaaatt aaaatattgt aaaaaaagcc aacgtagaga cacagaagta atgttcttaa       300
     cttaaagttt gataataggt gaattcactc taatattaaa agtaacaaca carggttggt       360
     tctgctaaac ataaatttgc tatgttgcgc gtgggtcaga gagagaaaac aaatagtgcg       420
     ctgacatcct c                                                            431
//
ID   TTAA2_AP    repbase;    DNA;    INV; 427 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA2_AP.
XX
NM   TTAA2_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-427
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1780-1780 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 427 BP; 150 A; 73 C; 73 G; 131 T; 0 other;
     gaggacgcta cccatacatt tgttgtctcc gtcttacaca cgcagtcgac atagcaaatt        60
     gtcgttcact agtttcaata gtgtgctgtt agttttgata ctagagtgaa ttgacctatt       120
     ataaaacttt taggtaagaa cattatctgt gcttaagcgt tgccgatttt tcgaaatttt       180
     cattttcaag caagatatgg gtatgtgaaa tatcaaaaat taaaaatgct catatctcgc       240
     ttgaaaatta aaatatcgaa taaaagccaa cgcttaagca cagataatgt tattatctaa       300
     aaaattgata ataggtcaaa tcactctaat atcaaaacta acagcacact attgaaacta       360
     gtgaacgaaa atttgctatg tcgtacgtgt gtaagacgga gacaacaaat gcatgggtag       420
     catcctc                                                                 427
//
ID   TTAA3B_AP   repbase;    DNA;    INV; 436 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA3B_AP.
XX
NM   TTAA3B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-436
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1781-1781 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 436 BP; 147 A; 70 C; 68 G; 149 T; 2 other;
     gaggacgtta caccgacatt tgttgtctcc gtcttacaag tgcgtaacat agcaaatttt        60
     acgctcagca gatcacgttt agctccgtta gtttaaaaat tagagtgaat tgacctctta       120
     taaaatttaa aggtaagatt attatctagg gnatctcata ggctttttat tatattttaa       180
     ttttaaagcg agttatgagt attttaaaat tgtaaatcgt ttgtacatct taaaatactc       240
     ataactcgct ttaaaattaa aatataataa aaagcctatg agatncccta gataataatc       300
     ttacctttaa attttataag aggtcaattc actctaattt ttaaactaac ggagctaaac       360
     gtgatctgct gagcgtaaaa tttgctatgt tacgcacttg taagacggag acaacaaatg       420
     tccgtgtaac gtcctc                                                       436
//
ID   TTAA3C_AP   repbase;    DNA;    INV; 425 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA3C_AP.
XX
NM   TTAA3C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-425
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1782-1782 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 425 BP; 150 A; 67 C; 62 G; 146 T; 0 other;
     gaggacgcca cacccgcatt tgttgtctcc gtcttacaaa cgtacaacat ggcaaatttt        60
     acgttcacaa taatacattt tactctgtaa tttttaaaat tagagtgaat tgacctctta       120
     taaaatttaa aggtaagatt attatctagg gcatctcgga ggcttttatt gatattttta       180
     ttaagaagca agttatgacc atttttaaac tgtacatttt aaaataatca taacttactt       240
     aaaaataata atatcaataa aatcctccga gatgccctag ataataatct tacctttaaa       300
     ttttataaga ggtcaattca ctctaatttt aaaaataaca gagtaaaatg tattattgtg       360
     aacgtaaaat ttgctatgtt gtacgtttgt aagacggaga caacaaatgc cggtgtggcg       420
     tcctc                                                                   425
//
ID   TTAA3_AP    repbase;    DNA;    INV; 429 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA3_AP.
XX
NM   TTAA3_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-429
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1783-1783 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 429 BP; 134 A; 74 C; 78 G; 140 T; 3 other;
     gaggacgcca caccggcatt tgttgtctcc gtcttacaag tgcgtaacat agcaaattta        60
     cgctcagcag atcacgttta gctccgttag tttaaaaatt agagtgaatc gacctattat       120
     gaaacttgat ggtaagaaca ttatctgtgt ttgtatgtgt tgggtttttt acgataattc       180
     agtttttaag tgagttatga gcattattta atttacgcta tattatawat gmtcataact       240
     tacttaaaaa ttgaactatc gtaaaaaacc macatacaaa cacagataat gttcttacca       300
     tcaagtttca taataggtcg attcactcta atttttaaac taacggagct aaacgtgatc       360
     tgctgagcgt aaatttgcta tgttacgcac ttgtaagacg gagacaacaa atgcgggtgt       420
     agcgtcctc                                                               429
//
ID   TTAA4B_AP   repbase;    DNA;    INV; 430 BP.
XX
AC   .
XX
DT   27-AUG-2009 (Rel. 14.09, Created)
DT   27-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA4B_AP.
XX
NM   TTAA4B_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-430
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2072-2072 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 430 BP; 155 A; 73 C; 77 G; 125 T; 0 other;
     gaggacgcta cacccgcatg tgttgtctcc gtcttacaaa tgtaaaacat agcaaaaact        60
     gttttgcgcg ggaaagaacc gagaaggcta ctagtcataa ctaagaaacg aaattttcac       120
     cacataaaaa ggagaacttt ggctgtgaaa tatcgttttt attttttcga tatcggaact       180
     acaaaaaaag ttattcaagt ttgaaaaaca caaaaaataa tggattttga aacaataaga       240
     acttttttcg tataagtgat atcaaaaaaa taaaaacgat atttcacaga taatgttctg       300
     aactatattg tatatcaatt tggagtctta actatcacta cagcctgagt ggttctatcc       360
     cgcgcaaaac agtttttgct atgttgtaca tttgtaagac ggagacaaca catgcgggtg       420
     tagcgtcctc                                                              430
//
ID   TTAA4C_AP   repbase;    DNA;    INV; 420 BP.
XX
AC   .
XX
DT   26-AUG-2009 (Rel. 14.09, Created)
DT   26-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA4C_AP.
XX
NM   TTAA4C_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-420
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2073-2073 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 420 BP; 126 A; 77 C; 83 G; 126 T; 8 other;
     gaggacgtca cgcccgcatg cgttgtctcc gtcttacaaa tgtacaacat agcaaaaact        60
     gttttgcgcg ggacaacttt nctccctccg tatttatagt agaattacca aaattccaca       120
     acgcataggg aagaacntta tctgtgccgc agcgtttcta ttttttggat aacataaata       180
     caattaaagt tattagtttg agaacatttn gtttttttca tttanttata aaaaatgatt       240
     ggnaagtgct atcgaaaaaa taaaaacgct gcggcacaga taaagttctt ctctacgcgt       300
     tgtggaantt tggtaattct actataaata cggagngagn aaagttgtcc cgcgcaaaac       360
     agtttttgct atgttgtaca tttgtaagac ggagacaacg catgcgggtg tgacgtcctc       420
//
ID   TTAA4_AP    repbase;    DNA;    INV; 433 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA4_AP.
XX
NM   TTAA4_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-433
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1784-1784 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 433 BP; 136 A; 70 C; 82 G; 145 T; 0 other;
     gaggacgcta cacccgcatg cgttgtctcc gtcttacaaa tgcacaacat agcaaaaact        60
     gttttgcgcg ggacaactat gctccctctg tatttatagt agaattacta aaattccaca       120
     acgcataggg aagaacttta tctgtgtcgt agcgttttta ttatttggat aacattaata       180
     taattaaagt tattagtttg agaacattaa gttttttttg tttttttcgt ttaattatta       240
     aaaactattg gtaagtgcta taaaaaaaaa aaacaaaaac gctacgacac agattaagtt       300
     cttccttatg tgttgtggaa ttttggtaat tctactataa ataaagaggg agcatagttg       360
     tcccgcgcaa aacagttttt gctatgttgt gcatttgtaa gacggagaca acgtatgcgg       420
     gtgtagcgtc ctc                                                          433
//
ID   TTAA5_AP    repbase;    DNA;    INV; 442 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA5_AP.
XX
NM   TTAA5_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-442
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1785-1785 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 442 BP; 141 A; 73 C; 83 G; 144 T; 1 other;
     gaggacgtca cacccgcatg tgttgtctcc gtcttacaca cgtacgacat agacaaaacg        60
     cgtttacgca gtctgagtag aactcgctca attttggttc tagagtaaaa atacctatta       120
     taaaattgaa ttgtgacaat atttctgagg gcaagtcgtt gcgttttttt taaaaattta       180
     aattttgaaa agttaaaggt aggtatttta aaaatgttga aattttttct atttctaaac       240
     gatattatra acgttatatt gggtatataa tggaaaaaac gcaacgactt gccctcagaa       300
     atattgtcac aattcaattt tataataggt atttttactc taaaaccaaa attgagcgag       360
     ttctactcag actgcgtaaa cgcgttttgt ctatgtcgta cgtgtgtaag acggagacaa       420
     cacatgcggg tgtgacgtcc tc                                                442
//
ID   TTAA6_AP    repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   21-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA6_AP.
XX
NM   TTAA6_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-431
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1786-1786 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 431 BP; 132 A; 72 C; 83 G; 144 T; 0 other;
     gaggatgtca cacccgcatg tgttgtctcc gtcttacaaa tgtacaacat agcaaaaact        60
     gttttgcgcg ggacaacttt tatctttctg tgtttgtagt agtggctcca aaatttctga       120
     acatataggg tggaaaatta tctatgcaac agcgtgccca tattttagat aacataaata       180
     caataaaagt tatttgcttc taaacacatt tggttttttg tttttttcat ttgcttataa       240
     aaaattgatt ggatagtgct attaaaaaaa aaagcacgct gttgcacaga taaagttctt       300
     ctttacgtgt tgtgaaaatt tggtagttct acaacaaata tggtgcgaga aaagttgtcc       360
     cgcgcaaaac agtttttgct atgttgtaca tttgtaagac ggacgacaac acatgcgggt       420
     gtgacatcct c                                                            431
//
ID   TTAA7_AP    repbase;    DNA;    INV; 434 BP.
XX
AC   .
XX
DT   21-AUG-2009 (Rel. 14.08, Created)
DT   15-FEB-2022 (Rel. 27.02, Last updated, Version 4)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   Kolobok; DNA transposon; Transposable Element; Nonautonomous;
KW   TTAA7_AP.
XX
NM   TTAA7_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-434
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1787-1787 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 434 BP; 150 A; 73 C; 72 G; 139 T; 0 other;
     ggggattcga taccgtgatt ttctgttttc gtctaacaca cgcgtgacat agtattttag        60
     acgtgttttt tgccaaacat accaattgat ctaatgaagc gataagaatt ctgaaaacag       120
     atttgaattc gtcatcaagt ctacttgaaa tcgactttcc cacatttttg atattatctc       180
     ccaaattcca gaaaaagtca tataaaaaaa gagtatttga acatttttgt atttcaattt       240
     ttggagaagc taaaatcaaa aaatcaaaaa tgtgggaaag tcgatttcaa gtagacttga       300
     tgacgaattc aaatctgttt tcagaattct tatcgcttca ttagatcaat tggtatgttt       360
     ggcaaaaaac acgtctaaaa tactatgtca cgcgtgtgtt agacgaaaac agaaaatcac       420
     ggtatcgaat cccc                                                         434
//
ID   TTAA8_AP    repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   23-AUG-2009 (Rel. 14.08, Created)
DT   23-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA8_AP.
XX
NM   TTAA8_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-438
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(8), 1788-1788 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 438 BP; 154 A; 70 C; 66 G; 148 T; 0 other;
     gaggctgtca gcgcactatt tgttttctct ctctggctca cacgcaacat agacaaaatg        60
     catttacgca aaatcatttt ttctatgtgt ttaagtaatc ttagagtaaa gtcacccatg       120
     acaaaaaaga tagagaataa tacttttgag ggaatgacat atcgatttgt ctaaatattg       180
     tctcaaaaca atttaaacat catttaaatt tacaacattt ttttatttat tttgaaagtc       240
     gaatacaaag tcaaataata ataaaatata aaatcgatat gtcattccct caaaaatatt       300
     attctctatc ttttttgtaa taggtgactt tactctaaga ttacttaaac gcatagaaaa       360
     aatgattttg cgtaaatgcg ttttgtctat gttgcgcgtg ggccagagag agaaaacgaa       420
     tagtgcgctg acatcctc                                                     438
//
ID   TTAA9_AP    repbase;    DNA;    INV; 479 BP.
XX
AC   .
XX
DT   25-AUG-2009 (Rel. 14.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAA9_AP.
XX
NM   TTAA9_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-479
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2074-2074 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea
CC   Aphid Genome Project.
XX
SQ   Sequence 479 BP; 142 A; 93 C; 103 G; 140 T; 1 other;
     cacgttgact gccacgagcc cgccggcgac ccaacacgga tgtgtaattg tggagctatg        60
     gtataaataa cagagcatta ctgtaatgca ctcatgtgta tttatagata ggagagtcca       120
     atcgnaattt tgaatatagc gttataatcg gaaagacctg aataatacaa atttaaaata       180
     aaaatatttg ggtcgccggc ggtcaatatt actcgaaata catctataat taaagatata       240
     atagtttttt ttttttttta attattcgtt tttttcccct ggacgccatg gtgtcattat       300
     aaaattttta tctccacgcc atcaaaaaat aaagtgtatt gaatacaatg agaggtttga       360
     attgccggcg acccaagcgg cccctgaaga ataattcggt ttgggtcgcc ggcgacccaa       420
     atggctccac attaacgcat cagtgttggg tcgccggcgg gctcgtggca gtcaacgtg        479
//
ID   TTAAC_AP    repbase;    DNA;    INV; 438 BP.
XX
AC   .
XX
DT   30-AUG-2009 (Rel. 14.09, Created)
DT   30-AUG-2009 (Rel. 15.12, Last updated, Version 3)
XX
DE   A family of DNA transposons - a consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TTAAC_AP.
XX
NM   TTAAC_AP.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-438
RA   Jurka J.;
RT   "DNA transposons from Acyrthosiphon pisum.";
RL   Repbase Reports 9(9), 2099-2099 (2009).
XX
RN   [2]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [2] (Consensus)
XX
CC   TSD is TTAA tetranucleotide.
CC   This sequence was derived from sequence data generated by Human
CC   Genome Sequencing Center at Baylor College of Medicine: Pea Aphid
CC   Genome Project.
XX
SQ   Sequence 438 BP; 153 A; 66 C; 63 G; 156 T; 0 other;
     gaggatgtca gcgcactatt tgttttctct ctctgaccca cgcgcaacat agcaaatttt        60
     acgttcacaa taatgattat aatcatatta atttctcaaa ttagagtgaa attacctctt       120
     ataaaattta aaggtaagat tattatctag ggcatctcat aggcgtttta ttatatttta       180
     attttaaagc gagttatgag tattttaaaa ttgtaaattg tttgtacatc ttaaaatact       240
     cataactcgc tttaaaatta aaatataata aaacgcctat gagatgccct agataataat       300
     cttaccttta aattttataa gaggtcattt cactctaatt tgagaaatta atatgattat       360
     aatcattatt gtgaacgtaa aatttgctat gtcgcgcgtg ggtcagagag agaaaacaaa       420
     tactgcgctg acatcctc                                                     438
//
ID   TV1I        repbase;    DNA;    INV; 5963 BP.
XX
AC   AF056940;
XX
DT   11-JAN-1999 (Rel. 4.00, Created)
DT   11-JAN-1999 (Rel. 4.00, Last updated, Version 1)
XX
DE   Drosophila virilis retrotransposon TV1, an internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; TV1I; TV1LTR; internal portion.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-5963
RA   Andrianov V.B., Zakharyev M.V., Evgen'ev B.M. and Schuppe G.N.;
RT   "Gypsy group retrotransposon Tv1 from Drosophila virilis.";
RL   Unpublished.
XX
RN   [2]
RP   1-5963
RA   Andrianov V.B., Zakharyev M.V., Evgen'ev B.M. and Schuppe G.N.;
RT   "TV1I.";
RL   Direct Submission to Genbank (01-APR-1998)Vavilov Institute of
RL   General Genetics Russian Academy of Sciences, Gubkin St. 3,
RL   Moscow 117809, Russia.
XX
DR   GenBank; AF056940; Positions     453    6415.
XX
SQ   Sequence 5963 BP; 2508 A; 1086 C; 880 G; 1489 T; 0 other;
     tggcgcagcc ggtaggatac gtcgggaaaa attaaagatc gctaaaggat aattaattcc        60
     cagatctaac gcacaatcgc gaccgaaagt gttgtcggag ttgtaataaa aattttcctc       120
     gaatacgtat ccgcacaaga accttccggt ccctagttag cttaataata ttgacccttt       180
     gggcaataaa gctactacag ttaataacga ctggctttgc atatcgtttg atccctgcaa       240
     tacgttatta ctgagtcttt ttaagacaca cacacaaaaa aaaaaaacat ttaaccaata       300
     atccatcaca aactttaacc taaaataaaa gtgcaaaatc aaagaacaat aaagttcaaa       360
     cctacaaact caaaactatt caaaaaaaag tgtattacac caagatgaca atggaattat       420
     cagaacaaca cctcaaccag gccctttcac aacttagaca ggtgccaagc tttgacggat       480
     caacggatca actaaacgcc ttcattaaaa ggatagatta catcctacac ctgtatccaa       540
     cccgagatgt tagacaacat agcatcttat acggagccat cgaattgcaa gtcacaggag       600
     atgctcagag aatatcacaa aggacagcag ccaacacttg gcaggagctg agaaacgcat       660
     tgattgaaga atacaaagtg cagacaccat ttgaagaact ccttcgacgc ttatacaaca       720
     cgaattacca aggaaacgtc cgtaagttca tcgaggagct cgagaataaa tcttttgtta       780
     tattaaataa gttagcacta gaaaatatac ctagcaatac aaccctttat acaaatgcta       840
     tgaataacac aatcaaagat gttattacaa aaaaattacc agataggctt ttcatgatgt       900
     tagccagaca cgacattacg tcgacacaaa aactaaagca agtagctcaa agagagggat       960
     tatatgaaaa tagtgttact gaaaaaccta aaaataataa tgttcaggga aatccaaata      1020
     acaatcgtag gaacatggga aattatcagc aaaatgctaa cccaaccacc atttcaagtg      1080
     gttattccaa cacgaatcag agttatcacg cacaaaataa acagcataat aagtccgaag      1140
     acaatcagaa agctcaccac gagtttccaa cagaaattaa gtcaaggtag ataccaaaat      1200
     cccttaaact accaaatcag tcccattcac gctgaatgca ccaaaccctc ccgactaacg      1260
     tcaagagata gtaacagtgg gcaaattaga atctgggata acatcgggaa atttttattc      1320
     agcaagcctc gggaaccaaa caggaacaaa tccattcata aaaattggat tatggaattg      1380
     acgaagttct taaaatgtgt catcgacaca ggttcaacca taaatctaat gaaaacaaac      1440
     cgcttaaatt ttccagttta caacgaaaca ttaaaggttc acaccataaa tggtgttatt      1500
     gaattaaaac aaagtatacg cttaggagca agcaaaattt gtccgagcaa acaaaaattc      1560
     tatattcacg acttctcaga gcattatgat gttctgattg ggagagaata ccttgaggca      1620
     tgtcaagcaa aaatagacta tgcacaagga tccgtaacct taggagaatt taacttttgt      1680
     tttagatata acgacgaaga ggtcgaagag gacatgaccg cacaagagtg ccttgatcca      1740
     ccctcaacag aggacagacc atttaacttc gctattaata atgaattaat agaaaacaat      1800
     gagtttaggc tagagcacct aaactcagaa gaaaaagaaa aaataaaaaa agttttacat      1860
     gaatttgtga tatccagtta ccatgaaggt gacaatttga ctttcactag ttacaattta      1920
     aacaccaaat tcctaaccaa acatgaggac cccatttaca agcgttccca taccaatatc      1980
     ctccaattat cgaatgaaga agttattcca tttagcgatt tgattaaacc aattcctaat      2040
     ggtttaccag taataattgt tccaaagaga aacgatgcat ttgggaagcc aaagttccgg      2100
     ttagtcatag attaccgcca tttcaatgaa ctaactatta atgataaata ccctatcccg      2160
     atcatggatg aaatattaga caaacttggg aaatgtcaat atttcacaac cattgatcta      2220
     gccaaaggct tccaccaaat ccaaatggat cctggttcaa tacccaagac cgcattttcg      2280
     actaaacatg gccattacga gtacactcgc atgccatttg gtcttaagaa tgcacctgca      2340
     acgttccaac gttgtatgaa caatctctta gaagatttaa tttttaagga ttgtctggtc      2400
     cacttagacg acattattat tttttccact tcattggagg aacacatttt gtcgctacaa      2460
     aaggtattta agaagcttag agaagctaac ttaaaactac agttggataa atgcgagttt      2520
     atgagaaaag aaactgaatt tctcggtcac ataatcacaa ctgagggtat aaaaccaaat      2580
     cccaacaaga tacaagcaat tgtcaaattc ccaattccaa aaaccccaaa agaaattaaa      2640
     tcatttctag gattatgtgg tttctatagg aaatttatac caaatttcgc taatatagta      2700
     aaaccattaa cacttaaatt aaaagggagc aaaatcaata taaaagacag agactacgaa      2760
     ctagcgtttg aaaagctaaa agtactcata acatccgacc caattttaat ataccctaac      2820
     ttcgaaaaac cattttcatt aactacagac gcgagtaata tggcaatagg ggccgtcctt      2880
     tcgcaagagc ataagcctat atgctatgca agtagaactc tcaacgagca tgagttaaat      2940
     tattcaacga ttgaaaaaga attattagca atcgtttggg ccactaaata ctttaggtcc      3000
     tatctctttg gtcgacaatt tcaaatcctt agtgatcaca gaccactcgt ctggttaaat      3060
     aatatgaaag aacctaacat gaaattacaa aggtggaaga tcaagctaaa tgagtttgat      3120
     ttccaaatta aatacgtccc aggaaaagaa aattatgtgg cagatgctct gtccagaatt      3180
     caattaaacg aaaacttctt aggcgaagat acaattagca caagagcaac aatacatagt      3240
     gctcaagaag acaacagtaa ccatttacaa atcacagaaa gaccacttaa ttattataat      3300
     cgacaaatag aatttgaaaa aggaaccgag aacgaaacaa aagttacgaa ttactttcac      3360
     aaaaccaaca taaaaattac gtacaaagac atgactaata cgcatgccaa agaattaata      3420
     aaagaatact tatgcacaaa gaaaagtgtg ctatacttcc acaacgaagc agattttcca      3480
     atttttcaag aagcctactt agaaataata agtccgaata attcaacaaa ggcaatgaaa      3540
     actagtacaa aattaataga ccttcaaaca tatgcagaat tcaaagaatt aatattaaaa      3600
     aagcacaaag aattattaca tccaggaatt gaaaaaacta tcaattggtt caaagaaacc      3660
     cactatttcc cagattatca aaatctaata aatgaatgtg agacttgcaa catcgcaaaa      3720
     acagaacaca gagatacaaa attaactttc gaaataactc cggaaatcgc taatatccga      3780
     gaaaaatatg taatggattt ttacatagta ggagataaac aatttttatc ttgcattgat      3840
     atctattcaa aatttgcatc attaatagaa ataaaaagta gagactggct agaaaccaaa      3900
     cgagctatat tacaagtgtt caaccaaatg ggtaaaccca tcgaaataaa ggcagacaaa      3960
     gactcagctt ttatgtgcac agctttgcaa ttatggctaa aatcagaagc agtaaatatt      4020
     aatataacca ctagtaaaaa tggtatatcc gacgtagaac gatttcataa gacagttaac      4080
     gaaaaactaa gaatcattaa cagcgactca gacgtcgaaa ataaacttac aaaatttgaa      4140
     actatactct acacgtacaa tcataaaaca aagcacaaaa cgactaacag aacaccagcg      4200
     gacatattca tatatgcagg tacaccagag tatgacacac aagctaataa agaaaaacta      4260
     ataaataatc tcaacaaaaa acgaacaaat tatgaaattg acactagata caaacactca      4320
     ccgttagtta aatcaaagac gacaaccccg ttcaagaaaa caggagaact aagacaaatc      4380
     gacgacaaac attttgagga aactaacaga ggcaggaaaa taacacatta caaaaccaaa      4440
     ttcaaaaaga aaaagaagac taatcaaagc aaatataaca attacaggtc aacaacagac      4500
     agcgatcaaa acatacaagc accagcttaa attaattatt ataatattac tatcaataac      4560
     tgtaaactat ataaatgcac agagtattga aattaatcct atcaaagccc ataacggata      4620
     tctcatattt aaaacaggaa ccatagacat tccgacagat tacgaattcc cactgtttaa      4680
     cggttaatat aacaaaaacc gaagaaactt ttaacaattt aattgaacaa agtaaagaat      4740
     tcaataacct tatacaaatc gaatacctag tagaaaaatt aaacagagaa ataaacggct      4800
     taaaaatagc caaacgcaac aaaagaggtt tagttaacat agtaggaaca gcatataaat      4860
     acttatttgg aacattagat caagaagaca aagcagaaat tgaacaaaaa ataagcaact      4920
     tagcagaaaa cagcgttcag gttaacgaat taaattacat aatagaagct ataaaacaag      4980
     gggataggaa tcatgaacga actagatcaa gagaaacaaa aagggaagaa attagatatc      5040
     cttatattta acttacaaca ctttacagaa tatatagaag acatcgagat gggaatgcag      5100
     ctcacaagat taggaatttt taacccaaaa ttactaaaac atgactattt gttgcatgtt      5160
     aattctgaga aattgttgaa tacaaaaact tccacttggt ttaaatcaga tacaaacgaa      5220
     atactgataa tatcccatat tcctcgagaa ataataaaaa gcccggtatt cgaaataatt      5280
     ccatacccgg atgaaaataa taatattttg acagaaatag ctcatgaaaa atattttacc      5340
     caagataaaa aagtttatag cagagaaaca aaaaaattaa ttaataataa atgtttaaca      5400
     ggaattttaa accaaataac atcagaatgt agttatacta aaattttgca aaattttcaa      5460
     atcaactaca tagaaccaaa tataatttta acttggaatt taccaaaaac tatattaaac      5520
     cataattgta taaataacga aataacaata gaaggaaaca atataataaa aatctttaat      5580
     tgttcattgc aaattaatga aatttcaatt tcaaacaata tgttagatta tacctcaaag      5640
     catttacgta ggcaatgatg ttataaaatt agaaccactt tcgtttgtac aaacgaaaca      5700
     aattattata tgcacataca aaatttacca atgtattcca gataattaca ataaccatat      5760
     ttgtaatcat attaataagt ttaacactgt attgacatat aagttcaaaa gcatacctaa      5820
     gaaattaatt ataaaatata aaaaacccaa agtagaagaa acacctacaa taataggaga      5880
     tataccaatt ctaaaagaag aaaatgttac actatatcca aacttaaaca cctgaggaca      5940
     ggcacttttc taatggttgg ggg                                              5963
//
ID   TV1LTR      repbase;    DNA;    INV; 452 BP.
XX
AC   AF056940;
XX
DT   11-JAN-1999 (Rel. 4.00, Created)
DT   11-JAN-1999 (Rel. 4.00, Last updated, Version 1)
XX
DE   LTR from TV1 retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR; TV1I; TV1LTR; retrotransposon TV1.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-452
RA   Andrianov V.B., Zakharyev M.V., Evgen'ev B.M. and Schuppe G.N.;
RT   "TV1LTR.";
RL   Direct Submission to Genbank (01-APR-1998)Vavilov Institute of
RL   General Genetics Russian Academy of Sciences, Gubkin St. 3,
RL   Moscow 117809, Russia.
XX
DR   GenBank; AF056940; Positions       1     452.
XX
SQ   Sequence 452 BP; 166 A; 103 C; 62 G; 121 T; 0 other;
     agtgacatat ccatagtcgc acccaccctt taacataact tagcacataa gcataagcac        60
     aattataaac atttctaata ttgtaaacaa agagcctggt gataacatcg acattggtca       120
     agatcaaact gtcccccttt ggtagacata aacaattcac cctaaatatc acgccactgt       180
     ggtagacata aacaattcac cctaaatatc acgccactgt caatgttccc atcagagtac       240
     tatcccacgc ataattgctg acgcagctca aacttcactc aattttgact caaactctct       300
     caaagcgaag tttgctaagc gaccgcaaca gttagataaa tcagttcata ttcgggaagc       360
     aaatctgaat gtactcaaca aaagtagccg ttaagtgaaa ataataaatt gaaatatatt       420
     tttttatagt aacctaacgt gtaaaactta at                                     452
//
ID   TWIN        repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   23-OCT-2000 (Rel. 10.06, Created)
DT   22-AUG-2012 (Rel. 17.08, Last updated, Version 3)
XX
DE   Twin SINE retroposons from the Culex pipiens mosquito - a
DE   consensus.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Interspersed repeat; TWIN.
XX
NM   TWIN.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-222
RA   Feschotte C.;
RT   "TWIN.";
RL   Direct Submission to Repbase Update (18-OCT-2000).
XX
RN   [2]
RP   1-222
RA   Feschotte C., Fourrier N., Desmons I. and Mouches C.;
RT   "Birth of a retroposon: the Twin SINE family from the vector
RT   mosquito Culex pipiens may have originated from a dimeric tRNA
RT   precursor.";
RL   Mol Biol Evol 18(1), 74-84 (2001).
XX
DR   [1] (Consensus)
XX
CC   Twins define a new type of tRNA-derived SINEs. These ~220-bp
CC   elements consist of two tRNA(Arg)-related regions separated by a
CC   39-bp spacer.
CC   Other tRNA-unrelated sequences include a 5-bp 5' leader and a
CC   short 3' trailer which is followed by a polyA tract of variable
CC   length (0-14 bp).
CC   According to this structure, we propose that the Twin SINE family
CC   has originated by retroposition of a dimeric tRNA precursor. The
CC   estimated copy number of Twins in the C. pipiens genome is ~500.
CC   The consensus sequence is derived from a multiple alignment of 6
CC   Twin copies. Pairwise identity between these copies ranges from
CC   83% to 96%.
CC   There are no obvious target site duplications flanking these
CC   copies.
XX
SQ   Sequence 222 BP; 48 A; 45 C; 70 G; 59 T; 0 other;
     gccgagcttc cgtggccgtg aggttacggg tttcgccttg taagcggaag gtgatgggtt        60
     cgattcctgt ctggctcggc aaagtcagat cccttcaaag agtaaatatg ctcactggga       120
     atactgaccg gtaggggatg ggtttcgact agcggcgtgc tggatttcca atccagaggt       180
     cgtgagttcg attctcgtac cgggatgatg aagttttaaa aa                          222
//
ID   TWIN2_CP    repbase;    DNA;    INV; 230 BP.
XX
AC   AF282725;
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   22-AUG-2012 (Rel. 17.08, Last updated, Version 2)
XX
DE   Culex pipiens Twin-Cp2 SINE retroposon.
XX
KW   SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; putative SINE element; TWIN2_CP.
XX
NM   TWIN2_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-230
RA   Feschotte C., Fourrier N., Desmons I. and Mouches C.;
RT   "Birth of a retroposon: the Twin SINE family from the vector
RT   mosquito Culex pipiens may have originated from a dimeric tRNA
RT   precursor.";
RL   Mol. Biol. Evol 18(1), 74-84 (2001).
XX
DR   Genbank; AF282725; Positions     368     597.
XX
SQ   Sequence 230 BP; 56 A; 46 C; 70 G; 58 T; 0 other;
     gccgagcttc cgtggccgtg aggttatggg tttcgccttg taagcggaag gtgatgggtt        60
     cgattcctgt ctggctcggc aaagtcagat cccttcaaag agtaaatctg ctcactggga       120
     atactgaccg gtaggggatg ggtttcgact aacggcgtgc tggatttcca atccagaggt       180
     cgtgagttcg attctcgtac cgggatgacg aggtttaaaa aaaaaaaaaa                  230
//
ID   Tx1-10_CQ   repbase;    DNA;    INV; 4930 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-10_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4930
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 642-642 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >90%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1478
FT                 /product="Tx1-10_CQ_1p"
FT                 /translation="MAESDLKTNSLKIRFAGNCREPTEPEIFDFMRGKMKL
FT                 KADHLLSMYKDKLDASVIVKFKNEEEFKATLARLPGTMEFAYNKYESTQVR
FT                 LSPANAVVKYVRLFNLPPEVDDREIGTALSKYGRIQRLIREKYGEETGFPI
FT                 WTSVRGAYIELKEGTEIPASLHVRNIRARVFYEGLVNKCFLCGATDHIKAE
FT                 CPERKTVNTRLDASRGSYSAAVAGGAARWFKQKMAEPTLSKEPEAXMTNLN
FT                 ALFPQTALMKPQQSMVEVKEKAPPAGPSSGKQIAAAKETDDLWSQALAAVA
FT                 DQLQQPQQENKQDGDGWRVVPPKKEKNKKNPKKVRSSSAGSSGASGSVDPK
FT                 FLRPRTPRPTAISDAQRNRDRSRSAPKNGDSKKPKIIVTAETNEEAKQPSS
FT                 GEMDVDGVDEMKVAGSGGGQGAGGEQGTGGEQGCGGGSFGRRFTVXW"
FT   CDS           1570..4836
FT                 /product="Tx1-10_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MMNFTYKLGSVNLNSSNSLVNKQLLKDFIYINDLDVI
FT                 FLQEVSYDNFSFVPSHAPIVNLSDSGSGTAILIRKTFDFSSPLLDPNGRIS
FT                 SVIINHINFINVYAFSGTNRKKERDDLFLDNMTIHLNKAGSKFCVVGGDFN
FT                 CILNAFDTAGSNKNYSTGLKRLIEIFNFKDIAVELRKHQFTFYRGDTESRL
FT                 DRFYAPSAFLENVLDFTTLPVAFSDHHAIIMKIKSCSDEFSLKGRGYWKIN
FT                 STIANDSSVSDQFSECFETWKLRHQYTDDKNLWWNVIAKKKFKQFYQNKSW
FT                 ELNQQISNEKSYFYRKMLEWMDKKNRNEETLLDIKMIKSRLYEIESNRMKH
FT                 LGNNLNNGNILQNEMVNLYQVSAQVKRFQSSSNLRLKDGNILVVDINVLKN
FT                 KVYQYYANLFTEDNNSSQQLSAEDPIHCLNSSLDQDDRDDIMRPITVVEIE
FT                 EILKNCTRKKSPGPDGLTYEFYINNFDSLKADLVLLFNGYLSGNMRPSKTF
FT                 TDGIITLIPKKGANSVHLDDYRPISLLNCDYKLFMKIIAERLKFYMGKLLG
FT                 FGQTACLPNSSCIDNLKDIRRILTRACESKRFKGCLVSVDLNKAFDRVNHS
FT                 YLWKVLEKFGFPTQLIDCLKNLYANAASRVLVNGFLTPEINISSSVRQGCP
FT                 LSMILFVLYIEPLLRKISVTIPPVLVYGKFINVLAFADDIVVFVKNDYEFD
FT                 NFIKVIDTFSKYASIKLNFAKSVFLRLNNAKVGPQKFKETEALKVLGVIFE
FT                 KSWSSTVNNNYKRLVTNINLSMLQHNVRKINIIERCIVLNTYILSKLWYVA
FT                 QLFPPANSHLAQIKSACGKFIWKGYIFKLDRKQLYLDFFKGGLRLVDPEAK
FT                 SKALFLKNIFYNLNAHGTQPDESYLIDLDSPQKLTRNAREWLNEGKAVVAN
FT                 HDLNTVKLMYNYFVSLNSESPAIEGKLSLKWTLIWKNCSESFLEMKDRAKM
FT                 FGFVNDLLPNKEKLLSYNIGNLTSAVCDKCGGIDSNSHRIKECPRAKEVWE
FT                 WSSRIVQNRYKMNVVDLEDILQLDLDEKSESEKAALWLAVKTISYNLRVSE
FT                 PSLFVLKKEIREHRWNERKNIRIIFGNSLNIC"
XX
SQ   Sequence 4930 BP; 1571 A; 774 C; 1126 G; 1452 T; 7 other;
     cagttcgtgt ttggacattg tcacagctag acgtgtttca agagcgagta tctaaaatct        60
     tccgattcgt gaccagcgtg cgcgctgcct gttctttgtt ataagaacaa tagttcgttt       120
     ggtttctttt gttatttcga taacgcggag tgaaaatggc ggaaagtgac ctcaagacca       180
     actccttgaa gattcggttt gccggcaact gccgagaacc tacggaaccg gaaatctttg       240
     atttcatgcg cgggaagatg aagctgaagg cggaccatct gctgtccatg tacaaggaca       300
     agttggacgc ttctgtgatc gtgaagttca agaacgagga agaattcaag gccactctgg       360
     ccaggttgcc cggaaccatg gagtttgcgt acaacaagta cgagtcgacg caggttcgcc       420
     tgtcaccggc aaacgcggtg gtgaagtacg tgcggctgtt caacctaccg ccggaggtgg       480
     acgatcgcga gatcgggacg gckctgtcca agtacggccg aatccagcgg ctgattcgcg       540
     aaaagtacgg cgaggaaacg ggtttcccca tctggacatc cgtccgagga gcgtacatcg       600
     agctgaagga gggtacggag attccggcgt cccttcatgt gcggaacatw cgagcaaggg       660
     ttttctacga aggtttggts aacaagtgct tcctttgcgg tgcgacggac catatcaagg       720
     cagagtgtcc cgaacggaaa acggtcaata cccggttgga tgctagccgc ggttcctaca       780
     gtgccgcggt tgctggtgga gctgctcggt ggttcaagca gaaaatggcg gaaccgacct       840
     tgagcaagga accagaggca amgatgacga acctcaacgc tctgtttcct caaacggctt       900
     tgatgaaacc gcagcagagt atggtggaag tgaaggaaaa ggcgcccccc gctggaccgt       960
     ccagcggaaa gcaaattgca gcagcgaagg agacggacga tctttggtct caagcgttag      1020
     cagcagtcgc ggatcaattg cagcagccac agcaggagaa caagcaagat ggagacggct      1080
     ggcgcgtggt gccaccgaag aaggagaaga acaagaagaa tccaaagaaa gtgcgttcaa      1140
     gttcggctgg ttcatcgggt gcatcgggtt cggtcgatcc gaagtttttg cgtccgcgwa      1200
     ctccgcgtcc gaccgctatc agtgatgcgc agcggaacag agacagaagt cgwtcggcac      1260
     cgaagaacgg cgactcgaag aagccgaaga tcatcgtgac ggcagagacg aacgaggaag      1320
     ccaagcagcc gagtagtggt gagatggatg tggatggcgt cgacgaaatg aaggtagcgg      1380
     ggtctggggg gggacaggga gccggggggg aacaggggac tgggggggaa caggggtgtg      1440
     gggggggaag ttttggacga cgtttcactg tgatktggta ggggaatagg gtttgcttct      1500
     ttgctttttt aaactttagt tataattttg tatagtagat ttagttagtt tagtttttgg      1560
     tagattttaa tgatgaattt cacttacaaa ttaggatctg tgaatttaaa tagttcgaat      1620
     agtttagtta acaaacagct cttgaaagat tttatttata ttaatgattt agacgttatt      1680
     ttcctgcaag aggtttccta tgataacttt tcgtttgttc catcgcatgc tcccatcgtt      1740
     aatttaagtg atagtggttc tggtactgcc attttgatta gaaaaacatt tgatttcagc      1800
     agcccccttc tcgaccctaa tggaagaata tcctcagtga taattaatca catcaacttt      1860
     attaatgttt atgcattctc gggaactaac cgtaaaaaag agcgggatga tttatttttg      1920
     gacaatatga caattcattt gaataaagcg gggtccaaat tctgtgtggt tggaggcgat      1980
     tttaactgca ttttgaacgc gtttgacact gctggttcga ataaaaatta ttctaccggg      2040
     ttgaagcgac ttattgaaat atttaatttt aaggacattg ctgttgaatt gcgcaaacat      2100
     cagtttactt tttatcgggg tgacacagag tcaaggcttg atcgatttta tgcgccgagc      2160
     gcttttttag agaatgtttt agatttcaca accctcccag ttgcattttc tgaccatcat      2220
     gcgattatta tgaaaatcaa atcttgcagt gatgagtttt ctttaaaagg tcgaggatat      2280
     tggaaaataa acagtacgat cgctaacgat agttcagttt cggatcaatt ttctgaatgt      2340
     ttcgaaacgt ggaagttaag acatcagtac accgatgata aaaatctttg gtggaacgta      2400
     attgcaaaaa aaaagtttaa acaattttat caaaataaga gttgggagtt aaaccaacaa      2460
     atttctaatg agaaatctta cttttataga aaaatgttag aatggatgga taagaaaaat      2520
     agaaatgagg aaactttatt agatattaaa atgattaaat ctcgtttata tgagattgaa      2580
     tcaaaccgta tgaaacattt aggaaacaat ttaaataatg gaaatatttt gcaaaatgaa      2640
     atggtaaatt tatatcaagt ttctgctcaa gttaaaagat ttcagtctag ttctaattta      2700
     agacttaaag acggtaacat cttagttgta gacataaatg ttttaaaaaa taaggtttat      2760
     caatattatg cgaatttatt taccgaagat aataacagtt ctcagcaact gagtgcagaa      2820
     gatcctatac attgtttaaa tagttcgcta gatcaagatg accgagatga cattatgcga      2880
     cctataacag tagttgaaat cgaggaaatt ttaaaaaatt gtacccgtaa aaagtcaccg      2940
     ggccctgatg gattaacata tgagttttat ataaataatt ttgattcttt aaaagctgat      3000
     ttagtattat tatttaatgg atatctttca ggtaatatgc gaccatcaaa aacttttaca      3060
     gatggaatta ttacgttaat acctaaaaaa ggtgcaaata gtgtgcattt ggatgattat      3120
     cgtccgatta gtttgttaaa ttgcgattat aaattattta tgaaaattat tgctgaacgt      3180
     ttgaagtttt acatgggtaa attgctaggt tttggtcaaa cagcatgttt gccaaattct      3240
     tcttgtatag acaatttaaa ggacattcgc agaattctca ctcgagcatg tgagtctaag      3300
     cgttttaagg gttgtttagt aagcgtggat ttgaataagg cttttgatag agttaatcac      3360
     tcctatctat ggaaagtcct ggagaagttt gggtttccta ctcaactgat agattgtttg      3420
     aaaaacttgt acgctaatgc agcctctcga gttttggtta atggattttt aactcctgaa      3480
     ataaatatta gcagctcagt acgacagggt tgtcctttaa gcatgatcct atttgtactt      3540
     tacatagaac ctctgcttag aaaaatttca gttactattc ctcccgtttt agtatatggg      3600
     aaattcataa atgttttagc ttttgccgat gatatagtag tttttgttaa gaatgattat      3660
     gaatttgata attttataaa agtaattgat acattttcga agtatgcatc tatcaaatta      3720
     aattttgcta aatcagtatt tcttaggttg aacaatgcta aagttggtcc acagaaattc      3780
     aaagagactg aagcattgaa agttcttggg gttatatttg agaaaagttg gtcaagtact      3840
     gtgaataata attataaacg acttgtcact aatatcaatt tatctatgct tcagcataat      3900
     gtaaggaaaa ttaacataat tgaaagatgt attgttttga acacctatat tttatcgaaa      3960
     ttatggtacg ttgcacaatt gtttccacct gcaaattccc atctagctca aataaaatcg      4020
     gcgtgcggca agtttatttg gaaaggatac atttttaaat tagatagaaa acaactttat      4080
     ttagattttt tcaagggagg tcttaggctt gttgatccag aagcaaaatc taaggcatta      4140
     tttctgaaaa acatttttta taatttaaat gcacatggaa cacaaccgga tgaaagttat      4200
     ttgatagatt tagattcacc gcagaaactt acacgtaatg caagggaatg gttgaatgaa      4260
     gggaaggcgg ttgttgccaa tcacgattta aatactgtaa aattgatgta taattatttt      4320
     gtttcactta atagtgaatc accagctatt gaagggaaat tgagtttaaa gtggacttta      4380
     atttggaaaa attgtagtga aagcttcctc gaaatgaaag atcgtgcaaa aatgtttggt      4440
     ttcgtaaatg atttgttacc taacaaagaa aaattattaa gttacaatat tggaaatttg      4500
     acgtcagctg tatgcgacaa atgtggtgga attgattcta attcacacag aataaaagag      4560
     tgcccaagag caaaggaagt gtgggaatgg agtagtcgta ttgtccaaaa tcgatataaa      4620
     atgaatgtag ttgatttaga ggatattctt caattagatc tcgatgagaa aagcgaatca      4680
     gaaaaggcag ctttatggct tgcagtaaaa acaatcagtt acaatttgag agtatcagaa      4740
     ccgtcattat ttgttttgaa aaaggaaata agagagcata gatggaatga gcgaaaaaac      4800
     ataaggatta tttttggaaa tagtttgaac atttgttaag agcaggttat gatagtttgt      4860
     aacacgaaca atgggtaaat aaactatttt taaaaaccga aaaaaaaaaa aaaaaaaaaa      4920
     aaaaaaaaaa                                                             4930
//
ID   Tx1-10_LMi  repbase;    DNA;    INV; 5648 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5648
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3490-3490 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(147..1262,1216..1566)
FT                 /product="Tx1-10_LMi_1p"
FT                 /translation="MAQTRRKDTLKLTFDSAFARPTSFELEEFIEREMKVG
FT                 INDIVGIHLSIVASVAYVKLRDAEFCEKVFESVGGSLKFKHSDGNVGQVTV
FT                 SHAGFGIRTIRVFELPFEVPAEEINVAIAPYGRVLNNFAERWSSAHKFPVL
FT                 NGVRQLKVDLQRHIPSYITICGYRAIVIYDGQPKTCGRCNSTGHVRAECVQ
FT                 RRVAQLPAGERVAPLAMTSLPTSFAAVARGEKPLHPSRDVTTEPIQETVEQ
FT                 TVNANDDVISRSDQAVAKPQSETQDVSAPRAPENDVTSXXSDVVPAQSAHT
FT                 VGTVDTQMVVATDSDHTNESRSTVNVPTDANTSQKKKKRRLAHQGAEHSAP
FT                 SLRGKAQAIGRELKEVVKRGYXSLSKPTQKKWLKEDTXPSQNRRNKXANKA
FT                 TLSDPPTDVDDTSSHSGTKSNALRDAGLRGPENVGSTVSTEWSEDVDTDDT
FT                 DVDMRDTSEVPLVSTHSATEGDKYSSHLATGTXKMETDNVPSYQ"
FT   CDS           join(1612..2403,2361..4643,4574..4951)
FT                 /product="Tx1-10_LMi_2p"
FT                 /translation="MNTSQAYKLVTLNLNKIRSSLKLKNLQDFLYAADIDV
FT                 AMLQEVSDINLEQIAGYNVFTNPGSGDELGTAILLKEGIIVKDVERLVSSR
FT                 GIAVSFNNTRLINVYAPSGSSNRKRRAEFFRHEVLPLFTSNCNDIIFAGDF
FT                 NCVLKHIDQTPNFNFCAELLHIVQDLGLTDTWTCLHGETTGFTHVTSHSAS
FT                 RLDRIYVSRNLTAQLLHSEIWPTSFSDHAAYICTINMEKQGTYRSRGLWKF
FT                 NTGHLRDDECRQVFLESWRKRVSMSAGISGIMAKACELKFHKFNSTLDWWL
FT                 RCAKPTLRKALMSYSREKNAWYRRTSEFYFQCLRDLYKLDATVVDNFAKIK
FT                 KIQAKLLSLKRRQMEGVKVRAKVPVSLKDEEAAMYHMIREAKRGNRKILTQ
FT                 IQTNTGVTVTTQSGIRAVIQQHYTELLSNKPIDETGFADFATNLPRRLSAA
FT                 DATELTTEVTEEELEDIVMQSPSNKSPGSDGLPAEVYKTFWPQLKTKLLTM
FT                 YNELMDPNTVVPPEFCQGIVVLLPKKPCSNTLTALRPITLLNGDYKIFARV
FT                 LSRRLKSIMHTITGPYQTSVGRDRSIYQTITDYRDIIAIAETCRLKCAILT
FT                 LDFEKAFDRVSHHFLFHIMQEMGFPRRFVSIIQNLFHNSTSRILINGQLTE
FT                 AIKVASSVRQGCPMSAALFAIAMEPLLVKLTHQLQGLVINGQKIVCHAYAD
FT                 DVGFLVVNEQEVESSLHIIQKYEAASGAKLNWQKSGIMHIGSGINMQHHVR
FT                 LKEVTSMKCLGIQFRKKIQNTIAVNYRDLLNKLRACIHLHSLRQLNIIQKV
FT                 ALVNTYIISKINYVAKVLPIPCGIAQSMLSAIGYFVSRGSIFKVKYETLTL
FT                 PIKNGGLNLTNVHTKAQALYTSSTYKLWKTSPHSLISHLLNEIAPPDLNPP
FT                 IDVHHIPPALHHIRNFLLEFSYVRKRIPEKEIMVAKQIYNSLIATKPQNNV
FT                 EKKYKNNNWRVIWENVNSRNLPSAVRSAWYTAVNRKIATNSKLYSINLVDS
FT                 SLFVTLARWKTVKNTDLYAFSRLLSVCNTCTVEDSEEHRFVCLKVREVWNI
FT                 VRQLLASITRTSATAITPADFLTPDTVPYPQTKRNSVNWIKAHTVYYIFNC
FT                 ENPSKEDFAMYLXIQHNKLRETPSYTKNYAKFLNNTINERLLY"
XX
SQ   Sequence 5648 BP; 1801 A; 1226 C; 1262 G; 1350 T; 9 other;
     cagttggcct gcagcggccg tgcagtgagg acctcctgtt gcgctgcgct gcaggamggc        60
     ttgtttacgt gctagggtaa gtcgctcgcg cacagcggtg tttacctgtt attagttgta       120
     ttcaagatgg tttctgagaa ctcctaatgg cgcaaaccag aagaaaagat actttgaaat       180
     tgacattcga tagtgccttt gcacgaccta cgtcatttga attagaagaa ttcatagaac       240
     gggaaatgaa ggttggaatt aacgacatcg tkggtataca tttgtcgatc gttgcaagtg       300
     ttgcgtatgt aaagttaaga gacgccgaat tttgtgaaaa agtatttgaa tctgtgggag       360
     gaagtctaaa atttaagcac agtgacggca atgtcggtca agtaactgtt tcacacgccg       420
     gttttggaat tcggacgata agggtctttg aattaccttt tgaagtacca gctgaggaaa       480
     taaatgtcgc aatcgcgcca tacggtagag tcctaaataa cttcgctgaa cggtggtcat       540
     cggctcacaa gtttcccgtg ttaaacggcg ttcggcaatt gaaagtagat ttacaaaggc       600
     acattccttc gtacataacg atttgcggat atcgtgctat tgtcatttat gacgggcaac       660
     ccaagacatg tgggagatgt aactctactg gtcatgtacg tgctgaatgt gtacagagac       720
     gagtagcgca gctacctgcg ggtgaacgcg tagcgcctct cgcgatgacg tcactgccga       780
     cgtcatttgc ggcggtagca cgcggcgaga agccactcca tcccagccgt gacgtaacta       840
     cggaaccgat acaagaaaca gttgagcaga ctgttaatgc caatgacgat gtaatttcgc       900
     gatctgacca agcagtagcc aaaccacaat cggaaacaca ggacgtctca gcaccgaggg       960
     ctcccgaaaa cgacgtcaca agtmacamca gtgacgttgt gcccgctcag agcgcacata      1020
     ccgtagggac agtcgacacg caaatggttg ttgcaactga ttccgaccac accaatgagt      1080
     cacggtcaac cgttaacgta cccacagatg ctaatacatc tcaaaaaaaa aaaaaaagga      1140
     ggttagcaca tcaaggggcg gaacattcag cgccgagttt gcgaggaaaa gcacaggcaa      1200
     taggtcggga attgaaagaa gtggttaaaa gaggatacag mtccctctca aaaccgacgc      1260
     aataaagmcg caaataaggc aacactgtcg gaccctccca ctgatgtcga cgacacgtct      1320
     agccacagtg ggacgaaatc aaacgcgcta agagatgccg gcctccgggg tcctgagaat      1380
     gtaggaagca cggtttcaac agagtggtcg gaagatgtcg ataccgatga cacagatgtg      1440
     gatatgaggg acacctcaga agtgccactt gtctccacgc attccgcgac tgaaggcgac      1500
     aaatactcct cgcacctggc cacaggtact camaaaatgg aaactgacaa tgttccatcg      1560
     taccagtaga aaagaaacac taacattctc tcccgcaatg gcgagtgaca catgaacacc      1620
     tcgcaggcgt acaaattagt cactttaaat cttaataaga tccgcagttc cttgaagtta      1680
     aaaaatttac aagattttct gtacgccgcg gacatagatg tcgcgatgct ccaggaagtg      1740
     tccgacatta atttagagca aatagccgga tacaatgttt ttaccaaccc cggcagtgga      1800
     gatgaattag ggactgcgat actccttaaa gagggaatca ttgtcaaaga tgtcgaaaga      1860
     cttgtgtcca gcagagggat cgctgtcagt tttaataata ccaggctgat aaatgtgtac      1920
     gctccatccg gatctagtaa cagaaaacgc cgtgctgaat ttttcagaca cgaagtattg      1980
     cctctcttca catcaaattg caatgatatc attttcgccg gtgattttaa ctgtgtgctc      2040
     aagcatatag atcaaacccc aaattttaat ttttgcgcgg aactcttaca tattgttcag      2100
     gatctcgggt taaccgacac ttggacctgc ttgcacggcg aaacgaccgg ctttacccac      2160
     gttacaagcc attccgccag ccggcttgat aggatctatg tgtccagaaa tttaacagcc      2220
     caactgttgc attctgagat atggcccact agtttttccg accatgcggc ctatatatgt      2280
     accattaaca tggaaaaaca gggtacatac cgcagtcgtg gcctatggaa attcaacaca      2340
     ggccatctgc gagatgatga atgtcggcag gtatttctgg aatcatggcg aaagcgtgtg      2400
     agctaaaatt tcataaattc aactcgaccc tcgattggtg gctcagatgt gccaaaccaa      2460
     cattaaggaa agccttaatg tcctattccc gtgagaagaa cgcatggtac agacggacgt      2520
     cggaatttta tttccagtgt ctccgggatc tgtataaact tgacgccaca gttgtagata      2580
     attttgcgaa gattaaaaaa attcaggcga aacttctatc actgaagaga aggcagatgg      2640
     aaggtgtaaa agtccgggca aaagtcccgg tttccctgaa agatgaagag gccgcaatgt      2700
     atcacatgat acgtgaagcg aaacgaggca acaggaaaat tttgacacag attcaaacca      2760
     acaccggtgt gaccgtaact acgcaaagtg gcatacgggc tgtgatacaa cagcattaca      2820
     ccgagttact gtcaaacaaa ccaattgatg agaccggttt tgcagacttt gcaacaaatt      2880
     taccacgacg cctcagtgca gcggacgcaa ctgaactgac aacggaggtg acggaagagg      2940
     agttagagga catcgttatg cagagcccga gcaacaaatc gcctggaagc gacggattac      3000
     cggcagaagt gtataaaack ttttggcccc aattgaaaac aaaactactt acgatgtaca      3060
     acgaattaat ggaccccaac accgtcgttc caccggaatt ttgtcaagga attgttgtac      3120
     tattgccaaa gaaaccgtgc agcaatacgc ttacggcctt aagacctatt actttactta      3180
     atggggacta caaaattttc gccagagtcc tcagccgtcg gctaaaatcg atcatgcaca      3240
     cgataacggg tccctaccaa acaagtgtcg ggagagacag atcaatttac caaacgatca      3300
     cagactatcg agatatcata gcaatagccg agacttgtag attaaaatgt gccatcttaa      3360
     cgctggactt tgaaaaggcc ttcgatagag tgagccatca tttcctcttc catattatgc      3420
     aggaaatggg ctttccgcgc cgattcgtga gtataataca aaatttgttc cacaatagca      3480
     cttctagaat attaattaat ggtcaactca ctgaagctat taaagttgcg agctcagtaa      3540
     gacagggatg tccgatgtca gcagctttat ttgccatcgc tatggaacca ctgctcgtca      3600
     agctcacgca ccagctgcaa ggcttggtta taaacgggca gaagatcgtg tgtcatgcat      3660
     atgcggatga cgtgggattt ctcgtagtga acgaacaaga agtagagtcc tcgctccaca      3720
     ttatccagaa atatgaggct gcatctggag ccaaacttaa ttggcaaaaa tccggtatca      3780
     tgcatattgg ttccggaata aacatgcaac accacgtgcg tttgaaggaa gtgaccagca      3840
     tgaaatgttt agggatacaa tttagaaaaa agatacagaa cactattgca gtcaactaca      3900
     gggacttact caataaactt cgagcatgta tccacctcca cagcctgagg caactgaata      3960
     ttatacaaaa agttgcactg gtgaacacct acatcatatc taaaataaat tatgtcgcaa      4020
     aagtgttgcc cattccctgc ggcatcgcac aaagtatgtt gtctgcaatt ggttatttcg      4080
     tgagcagagg cagcattttc aaagtcaaat acgaaacttt aacccttcca ataaaaaacg      4140
     gtgggttgaa tctcacgaac gtgcacacaa aggcacaagc actgtacacc agtagtactt      4200
     ataagctgtg gaaaacgtca ccgcacagtt taatttccca cctactcaac gaaatagcac      4260
     cgccagattt aaatccaccg attgacgttc accatatacc acctgcacta caccatatac      4320
     ggaacttttt attggagttc agttacgtcc ggaaaaggat accagaaaaa gaaataatgg      4380
     tggcaaagca aatctacaat tcgttaattg ccacaaaacc tcaaaataac gtagaaaaaa      4440
     agtacaagaa caacaattgg cgcgtgattt gggaaaatgt caactcacga aatttgccgt      4500
     ctgccgtgcg atctgcttgg tacaccgctg tgaataggaa aatagcgacc aattcgaagt      4560
     tatactccat taatttagtc gactcctctc tgtttgtaac acttgcacgg tggaagacag      4620
     tgaagaacac agatttgtat gcttaaaagt gagagaggtt tggaacatag ttaggcagct      4680
     gttggcaagt ataacgagaa cgtctgccac ggcgataaca ccagcagatt tccttacacc      4740
     cgacactgtg ccctacccac agacaaaaag aaattctgta aactggataa aagcacacac      4800
     agtttattat atttttaact gtgaaaatcc aagtaaagaa gacttcgcca tgtatctaca      4860
     satacaacac aacaaactac gggaaacccc aagctatacc aagaactacg caaaattttt      4920
     aaacaacact atcaacgaac gattactgta ctaaggtata ataaatgatt ctgattggaa      4980
     gaatggatgt tttagacatt tttcgaattg attgcgtctc gagaggacta ccagtatata      5040
     tagatacata tatataaact cattgctcat gaaggaaaaa tcatgaaaga ctactttttt      5100
     tattttttta attattatag ccatgaagct tatggctcgt gggaagttct gcggagataa      5160
     gagaagacga cttggttgta cgactggtgg caaacaaaat gaaagaacag aacggctcaa      5220
     gattgataga gaaacggaag cttaccacta cactttcgag aagacgatct ccgtcagggc      5280
     aaccgctgaa ccgaagtgaa atggaactaa cagcaaggtg ctttctttat ttatcattct      5340
     tagtaagttt ttattttgaa cacagaaaac gtcgattaca atacttttta ttttctttct      5400
     acaagcggaa atcgcaaagg aaactgctat tcaccacatc aacatgtaaa agaagaagat      5460
     agtttaattt tcacagaagg ccgagagaag ccgacgccga tgaaggcgat tttggtgagc      5520
     ggaaggacgg gttgaagggg aggaaggaga cccgaaaaaa aaaaaaaaaa aaaaacggta      5580
     agacgtctgc ctagtaagca tggaggtccg ggttcgattc ccggccgctc acaattttaa      5640
     ttcatgct                                                               5648
//
ID   Tx1-11_CQ   repbase;    DNA;    INV; 1386 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-11_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1386
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 643-643 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >98%
CC   identity.
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1277
FT                 /product="Tx1-11_CQ_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="LYENIFGCLIANNFVKVVAYADDLNILVRNNHEFDTV
FT                 LQLVSYFSIYSKIKLNFAKSQYLRFNGCLSGPHQIKEVESLNVLGVLICQN
FT                 FNKLVEINYDSYLNKLKYTLSLHQKRILNLFQKAWLLNTYVLSKIWYICQI
FT                 FPPNNKHLAAIKSICGQFIWQGFIFKVPRNELYLPVIKGGLALTDVESKAK
FT                 SLFIKNILYSNADGNAPLDNFMLGQINNSTLTRNMREWIVKADELKLESHL
FT                 NSSKKIYDFFIHSLNIKCKTMEDMPNLMWSNLLNNLDSNFLNSKCKTVLFC
FT                 IFKDIVLNKKKLHLYGIRGTDSKFCENCGLVESVSHLVKYCQTSEEIWRWL
FT                 KNILNKRLKILVKDPDELLSLSIGDRDFKYKAALWLTVQTIVYNLEKRGFG
FT                 DLNEFKQGIRIVRFNNKAIFERHFKHFLNIF"
XX
SQ   Sequence 1386 BP; 500 A; 186 C; 236 G; 464 T; 0 other;
     tgttatatga aaatattttt ggttgtctca ttgctaacaa ttttgtgaag gttgttgcat        60
     atgcagatga tctgaatatt ttagtaagaa acaatcacga gtttgatact gtcttgcagt       120
     tggtgagtta ttttagcata tactctaaaa taaaactcaa ttttgcaaaa tctcagtatc       180
     ttcgttttaa cggttgctta tctggtccac atcaaattaa agaagtggag tctctaaatg       240
     ttttaggagt tttaatttgc caaaatttca ataaattagt tgaaattaac tatgatagct       300
     atttgaacaa attaaaatac acattaagtt tacatcagaa acgtatttta aatcttttcc       360
     agaaagcgtg gttgttgaac acttacgttc tgtccaaaat ttggtatatt tgtcaaatat       420
     ttcctccaaa taataaacat ttagcagcga taaaatcaat ctgcggacag tttatttggc       480
     aaggatttat ctttaaggtt cctagaaatg aattatattt accggttatt aaaggtggtc       540
     tcgctctgac agacgtagaa tcaaaagcaa agtctctttt tattaaaaac attctttata       600
     gtaacgctga tggaaacgca cctttggaca acttcatgtt aggacaaatc aataatagta       660
     ctttaactag aaatatgcga gaatggatcg taaaagctga tgaactcaaa cttgaaagcc       720
     atttaaacag cagcaaaaaa atttatgatt tcttcattca cagtttaaac atcaaatgta       780
     aaacaatgga ggacatgcct aatttaatgt ggtctaattt gttaaacaat ttagattcaa       840
     attttttaaa ttcaaagtgt aaaaccgtac tgttttgcat ctttaaggac atagttttaa       900
     acaaaaagaa attgcattta tacggaataa gagggacgga ctcgaagttt tgtgagaatt       960
     gcggtttagt agaatcagtt agtcacttag taaaatattg tcaaacatcc gaagaaattt      1020
     ggagatggtt aaaaaatatt ctgaacaaaa gactcaaaat tttagtaaag gatcctgatg      1080
     agcttctatc attgagtatc ggtgataggg actttaaata caaagcagca ctttggctga      1140
     ctgtgcaaac gatagtttat aatttagaaa aacgaggttt tggggatttg aatgaattta      1200
     aacaaggcat aagaatcgtt cgtttcaata ataaagctat ttttgagcgc cattttaagc      1260
     attttttgaa catcttctag aaacatccaa agttaaatta tctctaccga gcttatttgt      1320
     cgtcttatta gcaagtggtg aaatgtaaat tcaagaaaaa tgttgtaaaa taaagtgaaa      1380
     aaaaaa                                                                 1386
//
ID   Tx1-11_LMi  repbase;    DNA;    INV; 5590 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5590
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3491-3491 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(131..760,812..1078,1050..1349)
FT                 /product="Tx1-11_LMi_1p"
FT                 /translation="MNQTKRIDTLKFTFDTTLPRPSSFEVENWLEETAKIS
FT                 ADEVIGINFSIVTSVVFLKVINSDVCDRVVASSGGALKFKYRDGAVGEVTV
FT                 THAGLGIRTVRVFELPFETTAEQINAVLAPYGRVLNNFAEKFSQSHKFPVL
FT                 SGVRQVKIDLTKHIPSYITVGGHRGIVIYDGQPRTCAGCGATGHVRAQCLQ
FT                 RRVAQIPAGEAPSSVTRRCPIPRHRTAMKTCCCADSTASVPASPNVDVLST
FT                 AEIPSDTHMEMSDDAAPSEPDREQTGLGEAVPIPGPNEVRELMDLGLLTRT
FT                 TRRNNELREQLDGTTNSDTDGSESSKESSSTKKTKKRRRAHQGANQVAPLL
FT                 REKAKXIISKIRHENSVTADVSKPVSGEMDVEMSASSGSISHQESSGAQPL
FT                 SRLHC"
FT   CDS           join(1678..2889,2789..3511,3515..4327,4186..4941)
FT                 /product="Tx1-11_LMi_2p"
FT                 /translation="MLQDLLRAADIDIILLQEVAAIELEQIAGYTAITNPG
FT                 SGXDLGTAVLAKEGIIMTDVEKLPNSRGIAVTVYRTRIINVYAPSGSSNRR
FT                 GRAEFFTSEIVPLFGRNYDHLILAGDFNCVLHRKDQTPNFNTSMELKRIVN
FT                 ELRLIDTWEHLHGMLQGFTYVTSHSASRLDRIYVTEQLTSSVLHSEIWPTI
FT                 LSDHAAYICTVNMCKQGTYRARGTWKLNNSILHDVECQRAFNDTWRECERK
FT                 AAQYNSVTEWWLKHAKPRIRRMFQTYSREKYYWQKKTTEFYFSCLRELYKS
FT                 DATIIDNYVQIKRIKAKLLKLKRQQCDGYKVRSRSDNLIEQEEPSMFHVIR
FT                 ENKRGKRKIITQLRLRDGTTLVQQHEIKKCNPYSPGRAAGNGKQRRNNATG
FT                 AVTQPSRVIKKNAIHTHLEELLATGSNDAIMQQELLHNLQGSLSDAQAENL
FT                 LKEIDEEELEYAIQRSPKNKSPGPDGLTAEFYHIFREQLQPKLLAMCNELL
FT                 QPHFNLPKELVEGIAVFVPKHPGSRLIDDFRPLTLLNCDYKIVARVIAHRL
FT                 KLMLNTVIGRYQTCVGLDRKIQQNLCEYRDVIATAEACKIQCALVSLDFAK
FT                 AFDKVNHQYLLSTMRAMGFRSASQTSSVKSSVKCYKSISEWTAHKRNIKSS
FT                 VRQGCPLSMALFAIAIEPLLATLNQRLRGLTINGIKIACNAYADDVGFLVT
FT                 DEQELAAALQIVNKYELASGAKLNERKCGXMNIGCGIAVQHHGYLTPVSKL
FT                 TCLGIEYRSDIRHTIAVNYRNLLARLRACIQSHYIRKLDDLQRVTLANVYI
FT                 TSKMNYVAQVLPMPHGXMQRIMSALGHFVTRGYIFKVKYDTLTLAVWDGGL
FT                 NLTHVETKTRALYVCNTYKIWKNLPNSLTAHLLNEITPTSLQPPINVQHIP
FT                 SAMSHFQTFLLSYIQDLEELTKQFNSPPVKRDNAYQSAASNQRPTYSERYV
FT                 PFPNLFIELSYLQVNMQDDELMTVHKVYKKLMETKNRNIIEQKYPNHXWPI
FT                 IWKNIHCRDLTTAVRASWYRLVNRKVHTNSRLYSIHLADSPLCATCNLLDS
FT                 DEHLFVCSKVQDVWNFIRKKLAIITRTSVLRITPDDFLHPDTVPYPKTKRN
FT                 SVNWLKGHFVHYLMSSTAKSKEDFSMYIVQQLHKLSRKKHYKRNYANFLEA
FT                 VFREEFRNY"
XX
SQ   Sequence 5590 BP; 1738 A; 1256 C; 1286 G; 1298 T; 12 other;
     cagtctcgtc gcggctgcgg cggtgtgcgg acctccggcg gagcggcgcg ccgtggcgag        60
     tttgtttacg tctgcgcggt gagtcgcgtg catacagcgt cgtcctagct gtggagaawa       120
     ccatggaacc atgaatcaga ctaagagaat agataccctg aagttcacct ttgacacgac       180
     tctccctaga ccgagctctt tcgaagtaga aaactggtta gaagaaaccg ctaagatatc       240
     tgccgatgaa gtcattggaa ttaacttttc tatcgtcact agtgtggttt tccttaaagt       300
     tatcaactcc gacgtatgtg acagagtagt agcaagcagt ggaggggcct tgaaatttaa       360
     atacagggac ggtgctgtcg gtgaggtgac tgtcacacat gcaggacttg gcatccggac       420
     agtgcgcgta ttcgagctgc cctttgaaac aacagcggaa caaattaatg cggtcctagc       480
     gccgtatggc agggtgttga acaattttgc ggaaaagttc tctcagagcc acaaattccc       540
     tgtgttaagc ggtgtgcgac aggttaagat cgacctaaca aaacatatcc cctcttacat       600
     mactgtaggc ggacaccgtg gaattgtaat atacgatggg cagccgagga cttgcgctgg       660
     ctgcggcgcg acaggccacg tcagagcgca gtgtttacaa cgccgcgtgg cgcagatacc       720
     agccggggag gccccgtcct ccgtgacacg gcgctgcccc tgacttactc atcggcgcta       780
     actgcagtgc aaaccgcgac tccaccttta gataccccgc catcggacgg caatgaaaac       840
     gtgctgttgc gccgacagta cggcaagcgt acctgcaagc ccaaacgttg atgtactttc       900
     aactgckgag attccctcag acacacatat ggaaatgagt gatgatgcag caccgagtga       960
     accagaccgc gaacaaacag gtttgggtga agccgtccct atacctggac ctaatgaagt      1020
     acgggagttg atggatcttg gtctattgac gagaacaact cgacggaaca acgaactctg      1080
     atactgatgg ttcggaatca tcaaaagagt catcctcgac aaagaagaca aagaaacgga      1140
     gacgagccca ccagggcgct aatcaagtcg ccccattact gagggagaaa gcaaagamga      1200
     ttattagcaa gatccgtcat gaaaattctg tgactgctga tgtgagtaag ccggtctcgg      1260
     gagaaatgga tgtcgagatg tctgcctctt ccggatcgat ttcgcaccaa gagtcgagtg      1320
     gggcacagcc tctatcccgg ctacactgct agcactggac tcctctgcag aggtacaaca      1380
     aacagaggat ttgcaccagt ccacatgtcc aaaatcctgg gcagaggaaa tggaagaagc      1440
     agaggagaac gctgaccaga acattgggga cggaatcctc aaccatcttg aaggagcagc      1500
     ccgcgactac aaaagatgcc actatggtag ccccgattga ggaacatgag gcttctattc      1560
     ccagtcaccg taacaggaca aaktaactac tagaaaccct aaagccatga atcagtcgca      1620
     agcatataaa atagccaccc tcaacataaa taagatccgg tcaggttgcg gctgtccatg      1680
     ttacaggatc tgttacgtgc tgccgacatt gacatcatat tgctacagga agtggctgcc      1740
     atagaactcg aacaaattgc cggatatact gctatcacca atccgggaag tggagmggat      1800
     ctmgggacag ctgttttggc aaaagaaggc atcataatga ctgatgtgga aaaattaccg      1860
     aatagcaggg gaattgcagt cacagtttac cgcactcgca taattaacgt gtatgcgcca      1920
     tccggcagta gcaatcggcg aggcagagca gaattcttta ccagtgaaat agtaccgcta      1980
     tttggtcgga attatgatca tctaatactt gcaggtgact ttaattgtgt gctgcaccgc      2040
     aaagaccaga cgcccaattt caacacatcg atggaactga aacgtatcgt caatgaactg      2100
     cgtttaattg acacttggga acacctgcac ggcatgttac aaggtttcac gtatgtcacg      2160
     agccattctg caagtcggct ggacagaata tatgtcaccg aacaactcac ttcttccgtc      2220
     ctacattccg aaatttggcc gacaatttta tcagaccatg ccgcatatat atgtacagtt      2280
     aacatgtgca aacaaggcac ataccgtgcc agaggcacgt ggaaactgaa taactccatt      2340
     ctccatgatg tagaatgcca gcgtgcattt aatgatacat ggagggaatg tgaacgtaaa      2400
     gcagcacagt acaactcagt gacggaatgg tggctcaaac atgccaaacc aaggatacgg      2460
     agaatgtttc aaacttattc acgagaaaag tattactggc aaaaaaagac cacagaattt      2520
     tacttctctt gcctaagaga gttatataaa tcggacgcga cgataattga caattacgta      2580
     caaataaagc gaattaaagc aaaacttctg aaacttaaac ggcaacagtg tgatgggtac      2640
     aaagtccggt ctaggtccga taacctgata gagcaggaag aaccttctat gttccatgta      2700
     attcgcgaga ataagagagg gaaaagaaaa attatcacac aactccggtt acgtgatggg      2760
     accaccctcg tgcagcaaca cgaaataaaa aaatgcaatc catactcacc tggaagagct      2820
     gctggcaacg ggaagcaacg acgcaataat gcaacaggag ctgttacaca accttcaagg      2880
     gtcattaagt gacgcacaag ccgagaatct ccttaaagaa attgatgagg aggaactgga      2940
     atatgccata caacgaagcc ccaaaaacaa gtcaccgggc cctgacggtc tcactgcgga      3000
     attctatcat atttttcgtg aacaactgca gccaaaatta ctagctatgt gtaatgaatt      3060
     gttgcagcca cattttaatc tgcctaaaga gctggtagaa ggaattgcag ttttcgtccc      3120
     taaacaccca ggaagcagac ttattgacga ttttagacct ctgacgctac taaattgtga      3180
     ctacaaaatc gtggcacgag taattgccca tagactgaaa ctgatgctga atacagtaat      3240
     aggcagatac cagacgtgcg tgggtcttga caggaaaatc caacaaaatt tatgcgaata      3300
     cagagacgtg atcgctacag cagaggcttg caaaattcag tgtgccttgg tatcacttga      3360
     tttcgcaaag gcatttgata aagtgaacca ccagtacctc ttgagcacca tgcgtgctat      3420
     gggtttccgc agcgcttcac aaacttcatc agtgaaatcc tcagtaaagt gttacaagag      3480
     cattagtgaa tggacagctc acaaaagaaa ttagataaag agctcggtga gacagggctg      3540
     ccctttgtca atggcacttt ttgctatcgc cattgaaccc ctgcttgcta cactgaacca      3600
     acgtctacga ggattgacaa tcaatggaat caagatwgcc tgcaatgctt acgcggatga      3660
     cgtgggtttc ttagtcacgg acgaacagga gttagcagca gctctccaaa tcgttaacaa      3720
     atacgaactt gcctcagggg cgaagttaaa tgaacgaaag tgtggtwtta tgaacatmgg      3780
     gtgcgggatt gcagtgcagc accatggata cttaactcca gtctccaaac tgacatgctt      3840
     aggcatcgaa taccggagtg acataaggca cacgatcgct gtcaattacc gcaatcttct      3900
     cgcacgtctg cgtgcatgca tacagagtca ctacatcaga aagcttgatg acttacaaag      3960
     ggttaccctc gctaacgttt acataacatc gaagatgaac tatgttgcac aagtattacc      4020
     gatgccacac gggasaatgc aacgaattat gtcagccctg ggtcacttcg tcactcgagg      4080
     gtacatcttt aaagttaaat acgacacgct cactttggct gtttgggatg gcggattaaa      4140
     ccttacgcat gttgaaacta agacacgggc gctatacgtg tgtaatacat acaagatctg      4200
     gaagaactta ccaaacagtt taacagccca cctgttaaac gagataacgc ctaccagtct      4260
     gcagcctcca atcaacgtcc aacatattcc gagcgctatg tcccatttcc aaaccttttt      4320
     attgagttga gctacctgca ggtaaacatg caagatgatg agctcatgac ggtgcataaa      4380
     gtttataaga agctaatgga aaccaagaac cggaacatca ttgaacaaaa atatcctaat      4440
     cacakatggc caatcatctg gaagaacatc cactgccgtg atctgacaac tgcggtcaga      4500
     gcctcctggt atcgcttagt gaacaggaaa gtccacacca actccaggct atattccata      4560
     cacttggcgg actcaccatt gtgcgcaacg tgcaacttat tggacagcga cgaacatctt      4620
     tttgtgtgct ccaaggtcca agacgtatgg aactttattc ggaagaagct tgcaatcatc      4680
     acaagaacat cggttcttcg tattacacct gatgatttct tgcacccaga tactgttccg      4740
     taccctaaaa ccaaacggaa ctctgttaac tggctgaaag gacacttcgt tcactattta      4800
     atgtcaagca cagctaaaag caaagaggat ttctccatgt atatagttca acaacttcac      4860
     aagttatcac gaaaaaaaca ttacaagcga aactatgcga actttctaga agcagttttc      4920
     agagaagaat ttagaaacta ctgagcaccc cagacattta aaaacatgga acacgaagat      4980
     tgaacgtact ttgatatctt tggaataaga gcatttttaa tacatttatt tttctattat      5040
     ttcaaatatt tttgttcaat aagttccaca tttaaacggc gagaggacgc ctttctttta      5100
     attatgtact cagcattccc ttatgtatta acatctgtaa taataaaaat acaaaacctg      5160
     gcagctcacg gttcgcgagt taagagcaga taaataaaga gaagagacaa agaatttaat      5220
     tgaattgtag aaacgataga aactaaacgg taacactcat ttttcgagaa gacgaactcg      5280
     gaatcgttca gagagctagg aaaaaaatgg cttcgacgga gatacgaagt tttattttag      5340
     tctttttatg gaagaagatt ttgattctca tcgtggaaga gatccattaa tttttacctg      5400
     cagaagaaag gaaaattgct ttaccaaagg ccgatgaagc cgacgccgat gaaggcgaat      5460
     ttggtgagcg gaaggacggg ttgaagggga ggaaggagac acgaaaaaaa aagaaaaaaa      5520
     agtggttaag gcgtccgctg gtctagtaag catggaggcg cgggttcgaa tcccggcccg      5580
     gttcacattt                                                             5590
//
ID   Tx1-12_CQ   repbase;    DNA;    INV; 4798 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-12_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4798
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 644-644 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           13..1188
FT                 /product="Tx1-12_CQ_1p"
FT                 /translation="MEPKRESTIKLRFGAGSRGPNNAEVFKFFGKQEWTXE
FT                 ELSAMYRDDYSIFVKFKTEQQMREALSKLGPQTRFEYDDGTSMMVPVTAAA
FT                 GSFKYVRIFGLPPEVDDRFIATAMSKYGTVQQMIRERFPVETGFPIHNGVR
FT                 GIHMELVSEIPAQLTIQHVKARIYYDGLQNKCFGCGALDHLKAACPNRKDV
FT                 NKRLTPAQKPGTGSFASVVANGTSGKAEELPPXSGMVLLGKXGAAPPTAPA
FT                 ESVQPSEPTPSGPPXSGPSDQPQLPADPVMPPVPIAPQEPTPPKPADIAEE
FT                 KQDQPMEEDGEREQSESDGEPMEKDGEWIEKXGKGGKGKGKRGRPKGRPGS
FT                 DSSEVDTNGRKKFIVPGQXHDLLDAQGDRTRSRSRSAAKPAGGDLQXXK"
FT   CDS           1351..4623
FT                 /product="Tx1-12_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNFVYTIATLNLNSSNANVNKNLLKDFIMDYNVDIAF
FT                 LQEVSFEDFSFIYSHNSLVNISIDKKGTAVLIRKSFSXSDFILDPSGRIVS
FT                 VRVNDVNLINIYAHSGNNLRKERDNLFTEALTVHLNKPGTKSMLIGGDFNC
FT                 ILHAEDSGSSQKNFSCGLKHLVDLXKLKDIAKTRKECKFTFHRGESASRLD
FT                 RFYGSDNIIGNVTSCSTIPLAFSDHHAVLIKLKLDDNNLSTRGRGYWKINP
FT                 SFLSMEDVTEKFKQEYLKLKQRDIFNRDLSKWWFFHFKGKAKNFYKSESWH
FT                 FNQSSRNCKAVLLNRLNELSDKLANGDNVGDEMSVIKSKLMSLEQNRLKNL
FT                 GEKLPACTLAEGEKITIYQLSNKIHRGNIFGLQLRDGPSHEILTDNAKLGP
FT                 VIHQYFSNQFQQSEDNISSAEIDNSIESISKNLSNDQKINLVKPITVEELY
FT                 ETLKKCNRKKSPGPDGLTYEFYLCHFDILKNDLCRLFNLYLRGESSPPKEF
FT                 SEGIITLVPKKGDKTLLENHRPISLLNTDYKLFTKLLANRIQIYMEDLLGS
FT                 GQSACIAGRSCTDNLNDVRRLITKSVESKTFKGMLLSIDLEKAFDKVNHKF
FT                 LWKILEKFGFPEKIIKILQCLYTKATSRVLYNGFLTNEIKIFSSVRQGCPL
FT                 SMILFVLYIEPLIRKIDQCILGVLTYNKFLRVVAFADDLNVFVRNAEEFDN
FT                 VLSIVDSFSRYSKVKLNYKKSCFLRINSCIGGPFIVQETEQLKLLGITFKN
FT                 TWKDIVDINYSKLISDMKYRINLNNFRMMSLLEKVWFINTFVLSKLWYLSQ
FT                 IFPPKNQHIATIRKIIGMFLWKNNIFRVDKRQLYLDVDQGGLGLIDPESKC
FT                 KALFIKNILKEQNISATDVSEKYLLGLNFTSKLTRNGKEWIMLAADLNCSS
FT                 PTINTAKQIYRNFIHEYLFKPRVQVELPQVNWGALWKIMGQTFILAKDKAN
FT                 LYLLINDLVPNKRKLKQYNIGRIDSEICDECGQIDTNSHRLRTCTAGSELR
FT                 EWMIKVLRKRFGIQLGQIDDILFWQIDENSHLQKAAMWLVVHYVAFCVDKF
FT                 PGLSLFVFQKSIREFRWNSRTFVKRYFDTNLNIC"
XX
SQ   Sequence 4798 BP; 1608 A; 803 C; 1033 G; 1333 T; 21 other;
     cgtagcacca aaatggaacc caaacgcgag agtacgatca agctccgttt cggagccgga        60
     tccaggggac cgaacaatgc ggaagtgttc aagttcttcg gaaagcagga atggaccmac       120
     gaggagctwa gtgcgatgta tcgggatgac tactcgattt tcgtgaagtt caagacggaa       180
     cagcagatgc gggaagcttt gtcgaagctc ggtccccaga ccagattcga gtacgatgac       240
     ggaacctcga tgatggtacc ggtcacggca gcagcgggat ccttcaagta cgtccggatt       300
     ttcggactgc ctccggaggt ggacgaccgg ttcattgcta cggcaatgtc caaatacgga       360
     acggtgcagc agatgattcg ggagcgtttt ccggtggaaa ccgggttccc gatwcacaat       420
     ggagttcgcg gaatacacat ggagctcgts tcggagattc cagcgcagct gacaattcag       480
     catgtcaagg cgcgaatcta ctacgacggw ctacaaaaca agtgcttcgg atgtggagct       540
     ttggaccacc tcaaagcagc gtgtccaaac cggaaggacg tcaacaaamg gctgactccg       600
     gcgcagaaac cagggactgg ttcctttgcc agcgtggtgg ccaatggaac aagcggaaag       660
     gcagaagagc taccacccaw ttctgggatg gttttgctgg gaaagmttgg tgcggcgccg       720
     ccaacagctc cggcagagtc ggtgcagcca tcggaaccga cgccatctgg accgccggma       780
     agcggcccat ccgatcaacc gcagctgcca gcggacccgg tgatgccacc ggtwccgatc       840
     gcaccgcaag aaccgacgcc accgaagcca gcggacatcg cggaagaaaa gcaagatcag       900
     ccaatggagg aagatgggga gagagagcag tcggagagcg acggcgaacc gatggagaag       960
     gatggtgagt ggattgaaaa aamggggaag ggagggaagg ggaaggggaa gcgtggtcgt      1020
     ccgaagggca ggcccggttc ggactcttcc gaagtkgaca cgaacggccg aaagaagttc      1080
     atcgtgccag gacaggkcca cgatctgctc gatgcacagg gmgaccgaac gagatcgcga      1140
     tcgcgatcag cagccaaacc agcaggcggc gacctgcaac samgcaagta aaagaaccga      1200
     attttccggc gttgacccat tgcactcaca catggacttg wttttgattc gtggaccatt      1260
     tactaacaca accgatatta ctaacccttt tactaacacc ttaacaatag tttacttact      1320
     aacacaaaag aaaagacaac ttctgtaaat atgaactttg tatatactat agcaacacta      1380
     aacttaaaca gcagcaacgc aaatgtaaat aaaaatttat tgaaggattt tattatggat      1440
     tacaatgtag atatagcttt tttgcaggag gttagttttg aagatttttc gtttatttat      1500
     tcacataatt cattggtaaa tataagtatt gataagaaag gcacagcagt gcttattagg      1560
     aaatcctttt catwttctga ttttattcta gatccatcag gcagaattgt ttcggttagg      1620
     gtaaatgatg taaatttgat taatatttat gcwcactctg ggaacaattt aaggaaagag      1680
     cgggataatt tgttcaccga ggctttgaca gttcacttaa ataaacctgg aaccaagtcg      1740
     atgctgattg gaggtgactt taattgcatt ttgcatgcag aagatagtgg aagttcacaa      1800
     aaaaactttt cttgtggatt gaaacattta gttgatttgt wtaaattaaa agatatmgcg      1860
     aaaacacgga aagaatgcaa attcacattt cacaggggag aatctgcttc caggttggat      1920
     cgattttacg gatctgataa catcattggg aatgttacaa gttgttcaac tattccactc      1980
     gcgttttcag accatcatgc tgttttgatc aaattaaaat tagatgataa taatttatcc      2040
     acaagaggac gtggatactg gaaaataaat ccatccttct tgtcgatgga agacgtaact      2100
     gaaaagttta aacaagaata tttgaaactg aagcaaagag atatatttaa tcgtgatttg      2160
     agtaaatggt ggttttttca tttcaaaggg aaggcaaaaa acttctacaa aagtgaaagt      2220
     tggcatttta atcaatcgag caggaattgt aaggctgtat tattaaatag attaaatgag      2280
     ctttctgaca aattagcaaa tggtgataat gtgggtgatg aaatgtccgt gattaaatcg      2340
     aaattgatgt cattagaaca aaatcgttta aagaatttag gggaaaaact accagcttgt      2400
     actttagcag aaggagagaa aataacaatt tatcaattat ccaataagat acaccgtgga      2460
     aacatttttg gcttacaact gagagacggt ccaagtcacg aaattttaac cgataatgct      2520
     aaactcgggc cagttattca tcaatatttt tctaatcaat ttcaacaaag tgaagataat      2580
     attagcagtg cggaaataga taattcaatt gaatcaatta gtaaaaattt aagtaatgac      2640
     caaaaaatta atttagttaa accaattaca gtagaagaac tttacgaaac tttgaaaaaa      2700
     tgcaatcgta aaaagtcgcc tgggcctgat ggattaactt acgaatttta tttatgccac      2760
     tttgatattc tcaaaaatga tttatgtcgt ctatttaatc tttatctgag aggagagagt      2820
     tcacctccta aagagttttc agaaggaata attactttag ttccaaagaa aggggataaa      2880
     acacttttgg aaaaccatag accgatttct ttacttaata cagactacaa actttttact      2940
     aagcttctcg caaatagaat tcaaatatat atggaggatt tattaggttc aggtcaaagt      3000
     gcatgcattg ctggacgatc atgtactgac aacttgaatg atgttagacg tttaatcacg      3060
     aaatcagttg aaagcaaaac ctttaaagga atgctactaa gtatagattt ggaaaaagct      3120
     tttgacaaag tcaatcataa atttctttgg aaaattctag aaaagtttgg gtttccagaa      3180
     aaaattatca aaattttaca gtgcctctat accaaagcaa catcaagagt attatataat      3240
     ggatttctta caaatgaaat taaaatattt tcttctgtca gacaaggatg cccgctaagc      3300
     atgattttat ttgtattgta tattgaaccg ttaattcgta aaattgatca atgcattctc      3360
     ggggttctta cttacaataa gttcctcaga gttgtggcat tcgcggacga cttgaatgta      3420
     tttgttcgaa acgcagaaga gtttgacaat gtcctgagta ttgttgactc cttctcccga      3480
     tattcgaagg ttaaacttaa ttataaaaag tcttgttttc tcagaatcaa cagttgcatt      3540
     ggtggacctt ttatagttca agaaactgaa caattaaagc ttttaggtat tactttcaag      3600
     aacacgtgga aggatatcgt tgatataaat tattctaaat taatcagtga catgaaatac      3660
     agaattaatc tcaacaattt tcgaatgatg agtttattag aaaaagtttg gttcattaac      3720
     acttttgtgt tatcaaagct atggtattta tcacaaatct ttccaccaaa aaatcagcac      3780
     attgctacga tcaggaaaat tattggaatg tttttatgga aaaataatat ttttcgtgtt      3840
     gataaaagac aactttatct agatgtggat caaggagggt tgggtttaat cgacccagaa      3900
     tcaaaatgta aagcattatt tataaaaaat attttaaagg agcaaaatat atctgcgact      3960
     gatgttagcg aaaaatattt attaggttta aattttacat caaaattaac aagaaatggg      4020
     aaggagtgga ttatgttagc tgctgattta aactgtagta gtccgactat aaatacagca      4080
     aaacaaattt atcggaattt cattcatgaa tatttgttta aaccacgtgt tcaagttgag      4140
     cttcctcaag tcaactgggg agctttgtgg aaaatcatgg gccaaacttt cattctggcc      4200
     aaggataaag ctaatttgta cttattaatt aatgatttag tgccaaataa acggaaactg      4260
     aagcagtaca acattggaag aattgatagt gaaatttgtg atgaatgtgg acaaatagat      4320
     acaaactctc atcggttacg aacatgtaca gcaggttctg aattgcgtga gtggatgata      4380
     aaagttttaa gaaaaagatt cggaatccaa cttggacaga ttgatgatat tttgttttgg      4440
     caaattgacg aaaatagtca cctccaaaaa gcagcaatgt ggttagtagt acattatgtc      4500
     gccttttgcg tggacaaatt tcccggtctt agcttatttg tttttcagaa gagtattaga      4560
     gaatttagat ggaactcgcg gacctttgta aaacgatatt ttgatactaa cttaaacatt      4620
     tgttagatat ataaaggatg gatcttgtag ggcttggtag ggcaaactta attgatactt      4680
     tgtacatcag ggaatttaag aatcctcaaa aaagttgctt gctgtttgaa ttgtaatcga      4740
     aatggtaaat agttgctaaa taaagaaaag tttttagaaa aaaaaaaaaa aaaaaaaa        4798
//
ID   Tx1-12_LMi  repbase;    DNA;    INV; 5515 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5515
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3492-3492 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           136..1488
FT                 /product="Tx1-12_LMi_1p"
FT                 /translation="MDQRRREDTLRLSFDPNYARPKSFEVEIFIRDVMKIT
FT                 IDELVGIHLSIVSSTVFLKMISAEKCQKVIESCGGTLKFKHSDGNIGNVTI
FT                 ARAGMGLKTVRIFELPFEITDDEINDKLKEYGTVISNFAEKWSNLHIFPVL
FT                 NGVRQVKIDMLKHIPSYITVGGYRAIVIYDGQPRTCSGCGSTEHVRAQCVQ
FT                 RRVTQLPTGERERPGPMSTLPISYVAAARGNIAPEQDLETALKAYXDPPEQ
FT                 VEVMDTSNVQEPLHINAQGAEVVNQVVETXKNKDDNSVVGTPTAETTVARE
FT                 SDEDQSSKSPSKKLKKRRIAREGAEEQARILREKADHVRKVLTQEASQSPP
FT                 DNPTSSQNSRTRESEXGQRKTTLEEHTKTNTRDQDSNPAQPKELVETRGNK
FT                 APREWSDDIDDNPRDEEMEEVQEYKAGGLSKLRNDKSDQQQKSSSSAGALE
FT                 DDPDFF"
FT   CDS           join(1524..1799,1742..2560,2458..3246,3215..4867)
FT                 /product="Tx1-12_LMi_2p"
FT                 /translation="MTTRAPANVAPLQAYRIATVNINKISCTFKLRNLQDF
FT                 LYAADIDIALLQEVTDIRLDRITGYNALINPGHGNELGTAIMTKEGIPSQT
FT                 SRGWTRDCNYDERGNPITNIERLVNSGGIACTIYNTRVINIYAPSGTGKKR
FT                 QRAEFFKEEIVPLFTRRPEQLIFAGDXNCVINPKDQIPNFNKSIELENIIE
FT                 QLNLLDTWELKHGDRPGFTHVTSHSASRIDRIYATSNLRNHILQSEIWPNI
FT                 ISDHAACICTVNLEKQGTYRARGPWKLNTAXLQDPGCHAXFRNTWAECERK
FT                 FTRYDSAIRWWIKCAKPALVKTMKHYSREKSAWMKTTTEFYFQCLRELYTE
FT                 DAAVIENYVQIMYKSKGXRPHFVLFSMSQRIIYGRCSGNRKLCANHVQIKR
FT                 IXATLLSLKRKQLEGCKVRTRLQSTVQEEXTSMYHIIQEEKRTNRKILTEL
FT                 KTDDGRTLTRQLDIRDEIFNHFTTLLAAKPVDEAAQQAIIARMSVKLNPDE
FT                 AEDLSANITEEEVAEAIRRSPKNKSPGPDGLPAEFYKTFGQQLISKLTLVC
FT                 NELLNTKSDVLQEFCEGIVVLVPKTPGGKXINNLRPITLLNSDYKIFTRIM
FT                 MQRLKSVITTITGPYQTSVGKKQGDISDFMERNRAIYQTLCEYRDIIATAE
FT                 ACNIQSAIVALDFEKAFDRVNHLYLFRTMEAMNFPQKIITAIKNLLTSSTS
FT                 RICVNGQLSKPVNVTSSVRQGCPMSLSLFAIALEPLLCWLTQDLAGLQIHG
FT                 HKIICQAYADDVSFVIRNDEELRKALQTISTYEAASGAILNRKKSGLMQIG
FT                 RSFDLTADVHLKQVETIKTLGIEYTRNIRRTAALNYRNLLAKIRAAIKHHT
FT                 LRNLNAIQKVHLANTYITTKVNYVAQVLPIPKVIXNQMQSALGYFVTRGQI
FT                 FKVQYDILTLPLEKGGLKLTDIYNKSQALFVSKFYKQWQRSPDTLTAHLLN
FT                 EIAPASMDPPIDVHHIPSAFCHFKHFLVELSYVQRSIPEKERYTVKEVYNN
FT                 TMKRKRRNKIEANYNEYAWENIQDPHLPSTVRSVWYMAVNGKIPTNSKLHA
FT                 IHLAETPNCINCDLIDTEEHRFTCIAVKDIWLLCTTKLAIILRTSPRTITP
FT                 ARLLYPDEVPYPITKRRAVNWLKGQTVYYIFSEKNKSKEDYWVHLLTEHEK
FT                 LKRMNKYREKYANFLLRILI"
XX
SQ   Sequence 5515 BP; 1890 A; 1159 C; 1187 G; 1265 T; 14 other;
     cagtcttcgt cgggcagccg tgctgtgcgg acgctttgtt tacgtcctcg ctgttggcgg        60
     ccgcgaggag ttttcggtga gtgcgcgctt tctgcgttct tatttacctt tgaagatgaa       120
     ctttagacga ctataatgga tcaacgacga cgagaagaca cacttagact gagctttgac       180
     ccgaattatg cgagaccgaa gtcatttgaa gtagagatat ttattcgaga tgtaatgaag       240
     atcactatag atgaattggt aggaattcac ttatcgattg taagtagtac agtattctta       300
     aagatgataa gtgctgaaaa atgccagaaa gtaatcgaat catgtggagg aactttaaaa       360
     tttaaacatt ctgatggaaa tatcgggaac gttacaattg cacgagccgg aatgggatta       420
     aaaacggtgc gaatatttga attgccattc gaaataactg atgacgaaat taacgacaag       480
     ctcaaggaat atggcactgt cataagcaac ttcgcggaaa aatggtcaaa tcttcacatt       540
     ttcccggtgt taaatggtgt aagacaagtg aagattgaca tgttaaaaca tattccgtct       600
     tacatcacag tcggtggtta tagagcaatc gtgatatatg atgggcaacc gcggacttgc       660
     tccggstgcg gttcaacaga acacgttcgc gcgcaatgtg tacaacggcg cgtgacgcaa       720
     ttaccgaccg gcgaacgaga gaggcctggc cccatgtcta cgttgcccat cagctacgta       780
     gccgccgcgc gaggtaacat tgccccagaa caagacctag agactgcgct gaaggcgtac       840
     amcgatcctc ccgaacaggt cgaagtaatg gacacgtcta acgtacagga gccacttcat       900
     attaatgcac aaggtgctga agtagttaac caagtagttg agactamaaa aaacaaagac       960
     gacaatagtg tagtgggaac acccacagca gaaacaactg tagcacggga atctgacgaa      1020
     gaccagtcta gcaaatcccc ttcgaaaaaa ctcaaaaaac gacgtatagc gcgtgaagga      1080
     gcggaggagc aggcgcgaat attgcgtgag aaagcagacc acgtacgcaa agttctcact      1140
     caggaggcat cacagtcacc tccagacaac cccacatcat cacaaaacag ccgaacacgg      1200
     gaatccgaas caggccaaag gaaaacaact ttagaggaac acacaaagac taatacaagg      1260
     gaccaggact ccaacccagc acaaccaaaa gaactggttg agacacgggg aaacaaggcc      1320
     ccacgagagt ggtctgatga catcgatgat aacccgcgag acgaggagat ggaagaggtg      1380
     caagaataca aggcaggggg gttgtcaaag ttgcggaatg acaagtccga ccaacaacaa      1440
     aaatcgtctt ccagcgcggg cgcactagaa gacgacccag acttctttta agtcctgttt      1500
     agcaagtaac atcaagaggg ggtatgacaa cacgtgcgcc tgcgaatgtg gcacccttgc      1560
     aagcataccg cattgcaact gtaaacatta ataagataag ctgcaccttt aaattaagaa      1620
     atttgcaaga tttcctctac gcagctgata tagatattgc ccttttacag gaggtcacag      1680
     acattcgact agaccgaatc acaggttaca atgcgttaat taatcccggt catggtaatg      1740
     aactcgggac tgcaattatg acgaaagagg gaatcccatc acaaacatcg agaggctggt      1800
     aaacagcgga ggcatagcgt gtacaattta taacacaagg gtgattaata tctacgcccc      1860
     ttccggaacg gggaagaaac gacagagggc agagtttttt aaagaagaaa tagtgcctct      1920
     tttcacgagg cgtccggaac aactaatatt cgcaggcgat wtcaattgtg tcattaaccc      1980
     caaagatcaa atacccaatt tcaacaaatc cattgagctc gagaacatca tcgaacaact      2040
     aaatctactt gacacgtggg agcttaaaca tggtgatagg cccggtttta ctcacgttac      2100
     tagccattcc gcaagccgca tcgatagaat ttatgcaaca tctaacttac gaaaccacat      2160
     tctgcaatca gaaatatggc cgaacatcat ttcagaccac gcagcctgca tttgcactgt      2220
     caacttggaa aaacagggaa cgtacagagc tagagggccg tggaaactaa atacagcgcw      2280
     cctacaagat ccaggatgcc acgcagwttt ccgaaatacg tgggcagaat gtgaaagaaa      2340
     gttcacgagg tacgactcag ccattagatg gtggattaaa tgcgcgaaac ccgcattagt      2400
     taaaacaatg aaacattact cccgcgagaa aagtgcctgg atgaagacca caactgagtt      2460
     ttattttcaa tgtctcagag aattatatac ggaagatgca gcggtaatag aaaattatgt      2520
     gcaaatcatg tacaaatcaa aaggatamag gccacacttt taagtttaaa gcggaaacaa      2580
     ctagaaggct gcaaagtcag aacgcgcttg caatccaccg tgcaggagga awcaacgtcg      2640
     atgtaccata tcatacaaga agagaaaaga actaatagga aaatcttgac agaattaaaa      2700
     actgacgacg ggagaaccct gacgagacaa cttgacatac gagatgaaat ttttaaccat      2760
     tttacaacgc tattagctgc caaaccggta gatgaagcgg cgcaacaagc catcatagca      2820
     aggatgtcgg tgaaattaaa cccagacgaa gcagaagacc tgtctgcaaa catcacagaa      2880
     gaggaagtgg cagaagccat acggaggagc ccaaagaaca agtcccccgg ccccgacgga      2940
     ttaccagctg agttttacaa aacttttgga caacagctaa tcagcaaatt gactctcgta      3000
     tgtaatgaac tactcaatac caaaagtgac gtattacagg aattctgcga aggaatagtt      3060
     gtgttagttc ctaaaactcc aggagggaag wctatcaaca acctgcgtcc cataacgtta      3120
     cttaacagtg attacaaaat tttcacgcgc atcatgatgc aaagattaaa gtcggttatc      3180
     acaactatca ctggacctta ccaaactagc gtaggaaaga aacagggcga tatatcagac      3240
     tttatgtgaa tacagagaca tcatagcgac ggcagaagct tgcaatattc aaagtgctat      3300
     agtagcactt gactttgaaa aggctttcga tagggtcaat catttgtatc ttttccgcac      3360
     catggaagca atgaactttc cgcaaaaaat tattacagca atcaaaaatc tactgacaag      3420
     ttccacctcc agaatctgtg tcaatggaca gttaagtaaa ccggtcaacg tcacaagttc      3480
     agttcgccaa ggttgcccca tgtctctgag cttgttcgca atagcgctcg aacctctgtt      3540
     gtgctggctg acgcaagacc tcgcaggact gcaaatacat ggccacaaga ttatatgtca      3600
     agcttatgcg gacgacgtta gcttcgtgat caggaacgat gaggaactaa gaaaggcgct      3660
     tcaaactata tcgacctatg aagctgcgtc aggagctata ttaaaccgaa aaaagtcagg      3720
     attaatgcag atcggtcgga gttttgacct aacggctgac gtacatttaa aacaagtgga      3780
     aactattaaa actctcggaa tagaatacac ccgtaacatc cgccgcacgg ctgccctwaa      3840
     ctatagaaac ttgttggcta aaataagagc cgctataaaa caccatactt tacgaaatct      3900
     gaacgctata caaaaagtgc atttagccaa cacgtatata acaactaaag taaactacgt      3960
     cgcccaggta ctaccaatac ctaaggtcat asctaaccag atgcaatcag cactcggcta      4020
     ctttgtcacc agggggcaaa tcttcaaagt ccagtatgat attttgacgc tacctttgga      4080
     gaaaggaggc cttaagttaa cagacattta caacaaatca caggctctgt tcgtcagcaa      4140
     gttttataaa cagtggcaac gatcacccga tacgctaaca gctcaccttt taaacgaaat      4200
     tgcaccggct agtatggacc caccaataga tgtgcatcat attccgagcg cattctgtca      4260
     tttcaaacat tttcttgtag aacttagcta cgttcaaaga agtattcctg agaaggagcg      4320
     atacacagtt aaagaagttt ataacaacac gatgaaaaga aagaggagaa ataaaataga      4380
     agccaactac aacgaatatg cctgggaaaa tattcaagac cctcacttac cgtccacagt      4440
     gcggtccgtt tggtatatgg cggttaacgg gaaaattcct accaattcaa aattacatgc      4500
     cattcatcta gcagagactc caaactgcat taactgtgac ttaatcgaca cagaggaaca      4560
     tcgtttcaca tgcatcgcag tgaaagacat ttggctcctc tgcacaacaa aactagcaat      4620
     tatactgaga acatctccga gaacgattac accagctcga cttctstatc cagatgaagt      4680
     tccctaccca ataacgaaga gacgagcagt caactggctt aaaggacaaa cagtgtatta      4740
     tattttctca gagaaaaaca agagtaaaga ggactattgg gtgcatcttc tgacagaaca      4800
     tgaaaaatta aaacgaatga acaaatacag agaaaaatac gcgaattttc tactcaggat      4860
     attaatatag aaataaaact cgggtatcac ccattgattt tttaatttta tttatttatc      4920
     tctattttta catactgaaa atggcttaaa ctcctgtaat tttcgaaggg tgatacagag      4980
     acgctgctga ctgatgcttc atggtacaag agatgtgaaa tgaaaggaaa aatatattag      5040
     aagatgaaga cacgagacaa acggaatcaa ctgcagcagc agcatatacg agaagacaac      5100
     cttgaagtac tcggaacgcc aaattaactc atgttcattc acggaagtac aggagaagcg      5160
     aagaggacac ttttcttttt aatttttttt atgtttaata taattttaga gtaagatatt      5220
     cagtttaatt tattgcgtct tcgaagaaga agattaagtc atttcgaaga cgaagctttc      5280
     aaattagttt atgaagaaat atttccttcc tttcatggag actctagaag aaggagtctt      5340
     caagaagatg ttaatttctc aataagaaga aatcccattt acttaggaag aagaagatat      5400
     taatttctct tttamgaatc cagatacaat ggtacagcta atgaagctag ccgcggaagg      5460
     ctatattggc gagcgcaagg acgggttgta ggggtggatg gagaccgaaa aaaaa           5515
//
ID   Tx1-13_CQ   repbase;    DNA;    INV; 3520 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-13_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-3520
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 645-645 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           179..3433
FT                 /product="Tx1-13_CQ_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNYTCIIASINLNAIQTRLKLSLFHDFVKNSNADIIF
FT                 XQEVAFNNFSFIFTHHAIVNVCRNQGTAILIRKGXDYDDIICDPNSRIVSV
FT                 LVNGINYINVYGHAGFXLKKERETLFAENIAIHLNKAAARAHVLGGDFNCX
FT                 LDPTDTKGNTKKNCNSLKVLTSKMALKDVXKALKNQAVQYTFXRGDSASRI
FT                 DRFYASQDXLKSVLNFETWPVIFSDHRAILMKISIQKSDLGTSFGRGYWKI
FT                 NTAFINDDECENEFCFTYEALQQRHSYENNFMNWWTTHFKSKVKNFFKMKS
FT                 IEFNRNIAMRKSELYKTLIELSSRQNDNEDVSREMGLTKSLIFKIESEKLK
FT                 YYESKLSSNSILTNERTNIYQIIARHKFNQSSRIEKLVDGCNKIVGTENIK
FT                 KFLFNHFSENFKKHDFLEPSCRSLNYIKKRLNQDDSNSIIGPITEEELKKV
FT                 VWSCTKKKTPGPDGICYEFYVKHFDLIKNDMIKLFNDLLRGNVVIPSSFCE
FT                 GVITLIPKSGCAENISGFRPISLLNCDYKIFTKILANRIQNVLGNILEEGQ
FT                 TACVNSKSCVDSLDMLRKIIVKASGSKRFKTAIVSFDMERAFDNVSHDLLW
FT                 SILEKFNFPDQFIACLRNLYRNATASVLFNGHLTNCFKIGRSIRQGCPLSM
FT                 LLFVIYLEPLIRELYSSVTGILLDHSFIKVVAYADDVTMVVKTDYEFDNVL
FT                 KIIEEXGKCSGIRLNSKKSSYVRINNCKLGPQILREETQIKVLGMLIVNNW
FT                 KDMIDKNYSKIISACRGKLNSICIRNLNFVQKSWILNTFILSKCWYLGQIL
FT                 PPDKRHIDELKKMVLRYFWGSQIFKVEAGQLYLPFERGGLALVEAEVKFKA
FT                 LFIRNILYKNNVVNRKHYLIDNISTKNLTRNTYDWVNIAIEYEAYDFLNTS
FT                 ALIYSSLLSKQSCEPKIQSKAPSPDWLSTWENFSENYMDSDAKSIIYEILN
FT                 DIYPNKEKLCSYNVRGLNNAECEICXELDTNLHRITNCTNSKEIWEWVVEK
FT                 VNVNMKANLPDPMEILSAYIGTKNRIFQAVYWIVSEAIVYNMRHYKNPSLF
FT                 VFKSILRNKRWDQRQFFVRRFGKYAFVF"
XX
SQ   Sequence 3520 BP; 1247 A; 549 C; 669 G; 1041 T; 14 other;
     acggacaaga caccaaaagg agaaagtggt aagccgcagc cacgtttaac gattcctaac        60
     ctgctcaagg ttctggatgg tcgcagtcga tcaaggtcgg cgcaaaagga gaaacctaac       120
     cccaaaaact aacaamaact aaccccaaaa agaaagaaca actaaccctt aacccawcat       180
     gaactacacg tgcattatcg ccagtatcaa tctaaacgca attcagacca ggcttaaact       240
     ctcacttttt cacgactttg taaagaacag taacgcagat attatttttk gtcaggaagt       300
     agctttcaac aatttttcat tcattttcac ccaccatgcg atagttaacg tatgcagaaa       360
     tcaaggcacg gctatwttga ttcgtaaagg tttkgattac gatgatatca tctgtgaccc       420
     aaacagtaga attgtttccg tactggttaa tgggattaat tatattaacg tttatgggca       480
     cgctggattc mwgctaaaaa aagaacggga aactcttttc gctgaaaata ttgccattca       540
     ccttaataag gcagctgctc gagcgcacgt gctgggtggg gattttaatt gcwtattgga       600
     tccgactgac accaaaggaa ataccaaaaa aaattgtaat agcttgaaag tactgacgtc       660
     aaaaatggcc ctcaaggatg tagamaaagc tttaaaaaac caagcagtgc agtacacctt       720
     twtgagaggt gattcagcat ctcgtattga cagattttat gcttcacaag atmttttaaa       780
     atctgttttg aattttgaga cctggcctgt gatcttctca gatcataggg cgattttgat       840
     gaaaatttcc attcaaaagt cagacttggg gacatcattt ggaagaggtt attggaagat       900
     aaacacagca tttattaatg acgatgaatg tgaaaatgaa ttttgtttta cgtacgaagc       960
     tctacaacaa cggcactcgt atgaaaataa ttttatgaac tggtggacga cccattttaa      1020
     atccaaggtt aaaaacttct tcaagatgaa aagtattgaa ttcaatcgga acatagccat      1080
     gcgcaaatct gaattataca aaacgttgat tgaattatcc tctagacaaa atgataatga      1140
     agatgttagc agggaaatgg gcttaackaa atcattaatt tttaaaatag aatctgaaaa      1200
     attaaaatat tatgaatcaa aactttcctc aaacagtatc ctcaccaacg aaaggacgaa      1260
     catttaccag attattgcca ggcataaatt caaccaaagt agtagaattg agaagcttgt      1320
     agatgggtgt aataaaattg tcggcacaga gaatattaaa aagtttttat tcaaccattt      1380
     ttctgaaaat ttcaaaaagc acgacttttt agaacccagt tgcagatcat tgaattatat      1440
     taaaaaaaga ctaaatcagg acgactcgaa ctcgataatt ggacctatta ccgaagaaga      1500
     attaaagaag gtagtatgga gttgtacaaa gaagaaaacc ccgggccctg acggtatttg      1560
     ctatgaattt tacgttaagc attttgattt aataaaaaat gatatgatta agttatttaa      1620
     cgacttgctg cgtggtaatg ttgtaattcc ttcttctttt tgcgaaggag taataacatt      1680
     gataccaaaa tctggatgtg cggaaaacat ttctggtttt cgtcccataa gcctgttgaa      1740
     ttgtgattac aagattttta caaaaatact tgcaaatcgt attcagaatg ttttgggaaa      1800
     tatccttgag gaagggcaaa ctgcatgcgt taatagcaaa tcatgcgtgg acagtcttga      1860
     catgctgaga aaaattattg tcaaagcttc cggttcaaaa agatttaaaa ctgcaatcgt      1920
     tagtttcgat atggaacgcg cattcgacaa tgttagtcat gatttattgt ggagcatatt      1980
     agaaaaattt aactttccgg accagtttat cgcatgtcta agaaatttat accgaaatgc      2040
     taccgccagt gttctattta acgggcattt gacaaattgt tttaaaattg gcagatccat      2100
     ccgacaaggc tgcccactct cgatgctact tttcgtaatt tacttggaac cattgataag      2160
     agagctctat tcttctgtta caggcatatt actagatcat agttttatta aagtggtagc      2220
     gtatgcggac gacgtaacaa tggttgttaa aacagattat gagtttgata acgtgctgaa      2280
     aattattgaa gagtwtggga aatgttctgg aattcgattg aatagtaaaa aatcttctta      2340
     cgtacggatt aacaactgta aattaggacc acagattctt agagaggaaa cacaaataaa      2400
     ggtacttggg atgttaattg taaataattg gaaagatatg attgataaaa attacagcaa      2460
     aattatatca gcatgcagag ggaaattgaa ttcaatctgc attagaaatt taaattttgt      2520
     tcaaaaatct tggattctaa atacgtttat tctttcgaag tgctggtatc ttggtcaaat      2580
     tttaccgcca gacaaacgcc atattgatga attgaagaaa atggtgttaa gatatttctg      2640
     gggttctcaa atttttaaag ttgaagcagg acaattatat ttacccttcg agagaggtgg      2700
     attagcgtta gttgaggcag aggtaaaatt caaagcatta ttcattagaa atatcttata      2760
     caaaaataac gttgttaata gaaaacacta tcttatagac aatatttcta caaagaattt      2820
     aactcggaat acatatgatt gggtgaacat tgctattgaa tacgaagcct acgatttttt      2880
     gaacacatcg gcactaattt atagctcgtt gttgtctaaa caaagctgtg aaccgaaaat      2940
     ccagagcaag gcgccaagtc ctgactggtt gagcacgtgg gagaatttta gtgaaaatta      3000
     tatggactct gatgcgaaat ctataatcta tgaaatttta aacgatatat atccaaacaa      3060
     agaaaaatta tgcagctata atgtgagggg attaaataac gccgaatgcg agatttgcma      3120
     tgaacttgat acaaacttac atagaataac aaattgtaca aattcaaagg aaatttggga      3180
     atgggtagtt gaaaaagtga atgtcaatat gaaggcaaat cttccggatc caatggaaat      3240
     cctttctgca tacataggaa caaaaaatag aatttttcag gccgtttatt ggattgtgtc      3300
     agaagctata gtttataata tgaggcatta caagaatcca tcgttatttg tatttaaaag      3360
     cattctcagg aataaaaggt gggatcagcg acagtttttt gttaggaggt ttggaaaata      3420
     tgcatttgtt ttctaacagc gttgtgtatt taaagattta gatgtaccta catatgtaac      3480
     ataaaacaaa agtgaaataa aattgtattt aaaaaaaaaa                            3520
//
ID   Tx1-13_LMi  repbase;    DNA;    INV; 5079 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5079
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3493-3493 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(246..602,606..941)
FT                 /product="Tx1-13_LMi_1p"
FT                 /translation="MLGMWFYRTRSRAVFTTARDANTDRRAREAWPRVYVA
FT                 HQLRAAARGNIAPEPNLDAALEAYNELKNTKYPWNYNTPDXLPSNQQAADE
FT                 SNQVVVCESNSNDNNCGRVRXCGRNTPGITIDTESNDQQSEKSPTKQKKRR
FT                 IAHEGADEKAQILREKADRIRKTLTEGTSQPPPGHLPASKKTRTREPGSGQ
FT                 MQKTSDERAKTNTEDQAGNIKLRKEQDGESKGHIQPRHVVR"
FT   CDS           join(1127..2731,2712..3143,2936..4474)
FT                 /product="Tx1-13_LMi_2p"
FT                 /translation="MTSSMPANVFLPLQAYRIATVNINKISCTFKLKNLQD
FT                 FLYAADIDIALLQEVTDINLESITGYNTLINPGYGGELGTAIMTKEGILTT
FT                 NVERLTNSRGIACTINNTRIINIYAPSGTGKKHQRAEFFKDAIVPLFMRRP
FT                 EQVIFAGDFNCVLKPKDQIPNFNKCIELENIVREVNLVDTWELKXGDKPGF
FT                 THITSHSASRIDRIYVTSNLQHHILQAELWPNIFSDHAAYICTANLQKQGT
FT                 YRAKGTWKLNVAHLTDPGCHETFRNTWTECERKFSKYDSAFTWWMKCAKPA
FT                 LIKAMKRYSWVKNVWTKNTIEFYYQCLRDLYQQDATVIDNYTQIKRIKATI
FT                 LSLKRKQLEGCKIRTRLQNTVEEETTSMYHIIQEQKRTNRKILTELKAEHG
FT                 GTLTTQRDIREEIYKYFTTLLADKPVDEAAQQTVLARLTAKLNPEEADDLS
FT                 ADVTEEEVADAIRRSAKNKSPGPDGLPAEFYHTFEQQLVSKLTLVCNEILN
FT                 ARSDMLLEFCEGVVVLVPKVPGGKTVNNLRPITLLKYRLHYSNTDYKIFTR
FT                 IITQRLTSVITXITGNYQTSVGKNRTIHQTLCEYRDIIATAEALNIPSALV
FT                 SLDFEKAFDRVNHSYLFRTMEVMNLPQKIVTVVKNLLTSSTSRICVNGQLS
FT                 RPVRIKSSVRQGCPMSLACLRWRLNLCCAPPFLSFPDYGSHESPTKNCHCG
FT                 QKPIDKFHVTNMCQRSIKQTGQNQKFSTPGLPNVPGLFAMAIEPLLCSLTQ
FT                 DLAGLQIHGHRIACQAYADDVSFVITGGDELGKAFKNIRXYEAASGAKLNC
FT                 XKSGIMHIGRGLDLRGDVQINCVETIKTLGIEYTRDIRRTAALNYRKLLAK
FT                 MRAAIQQHGLRKLSAIQKVQLANTYITSKVNYVAQVLPIPKIIAQQMLAAL
FT                 GHFVTRGQIFKVQYETLTLPLSNGGLNLTNIYKKSQALFVSKLYKQWQRSP
FT                 DTLAAHLLNEIAPTSMDPPVDVHHIPNALYHIRHFLVELSYIRRNTLEKDL
FT                 YKVKEVYNNMMSNQNGNRIEKKYKEYNWEKIWENIQDPHLPTEVRSTWYTA
FT                 VNRKIPTNSKLHAIHLAETPNCISCNLVDTEEHRFTCDAVTTVWTLCTTKL
FT                 ASMLRTSPRTITPARLLHPDEVPYPSTKHRAVNWIKGQTVYYILTEKDKSK
FT                 EDYWIYLTTEHEKLKRTKKYREKYANFLLRTLS"
XX
SQ   Sequence 5079 BP; 1754 A; 1134 C; 1115 G; 1065 T; 11 other;
     catgggtttg aaaactgtac gaatcttcga attgccattc gaaatacctg ccgaagcaat        60
     taacgacaac tcagagaata cggcactgta ctcagtaaca tcgcggaaaa gtggtcagac       120
     tctcacattt tcccggtgtt gaacggtgtc agacaggtga aaatagagat gttgaagcac       180
     ataccgtcct acatcacsgt ttgtggctac agggcggttg taatatacga agggcaacca       240
     cgaacatgct cgggatgtgg ttctacagaa cacgttcgcg cgcagtgttt acaacggcgc       300
     gtgacgcaaa taccgaccgg cgagcgagag aggcctggcc ccgtgtctac gttgcccatc       360
     agctacgtgc cgccgcgcga ggmaacattg caccggaacc aaatctagac gcagccctgg       420
     aggcgtacaa cgaactgaag aacacgaaat acccatggaa ctacaacact cctgatkccc       480
     ttccttctaa ccagcaggct gcggacgaaa gtaaccaggt agttgtttgt gaaagcaaca       540
     gtaatgacaa caactgtgga agagttagaa matgcgggcg aaacaccccc ggcatcacca       600
     tctgagacac ggaatcaaat gaccaacagt cagagaagtc tcccacgaaa cagaaaaagc       660
     gccgtattgc acatgaaggt gcggacgaaa aggcacaaat actgcgcgag aaagccgacc       720
     ggatccgaaa aacactaacg gaagggacat cacaaccccc tccgggacac cttccggcat       780
     caaagaaaac ccgaacgcgg gaaccaggtt caggccaaat gcaaaagacg tcagacgaac       840
     gcgcaaaaac gaacacggag gatcaggcgg gaaacatcaa acttcgaaaa gaacaggacg       900
     gagagagcaa gggacacatc cagccgagac acgtggtcag atgacaccga cgaggccact       960
     cgagaggaag agatgccaga ggttccggga aacacggcag gggcgtcgtc agataattgt      1020
     ataggcaaac ctgaccggcg ccaaaacatc gcgccggatc gggcggagta gacgacgacc      1080
     cagaatactt ttaggtcatg tgtcgtcgat aacattcaca ggaagtatga catcaagtat      1140
     gcctgcaaat gtgtttttac cgttgcaagc ttatcggatt gcaactgtca atatcaataa      1200
     aataagctgc acgtttaaat taaaaaacct ccaagacttc ttgtacgcag ctgacataga      1260
     cattgcgctg ttacaggaag taacagacat taacctggaa agtataacag gttacaacac      1320
     cttaattaat cctggttacg gcggtgaact cgggacagcg atcatgacaa aagaaggaat      1380
     cctgaccaca aacgtcgaga ggctaacgaa cagcaggggc atagcttgca caataaataa      1440
     caccaggatt attaatattt atgctccttc cggaacgggg aagaaacatc agagagcaga      1500
     attttttaaa gatgcaatag tgccactctt tatgcggcgt cccgaacaag tcatmtttgc      1560
     aggcgacttt aactgtgtcc tcaaacctaa ggaccagata ccaaatttca acaagtgcat      1620
     cgaacttgag aatatcgtca gagaagtcaa tctagtcgac acatgggaac tcaaacawgg      1680
     tgataagccc gggtttactc acattaccag ccattccgct agtcggatcg atagaattta      1740
     cgtaacgtcg aatttacaac atcacattct gcaagcggaa ctatggccga acatattttc      1800
     agatcatgca gcctacatat gcactgctaa cctacaaaaa caaggaacgt acagagcaaa      1860
     aggaacgtgg aagttaaacg tagcgcatct gacagaccca gggtgccacg aaacctttcg      1920
     maatacgtgg acagaatgcg aaaggaagtt ttcaaagtac gactcggcct ttacgtggtg      1980
     gatgaaatgc gcaaaacccg ctttaataaa ggccatgaaa cgttactctt gggtaaaaaa      2040
     tgtttggacg aaaaacacaa tagaatttta ttatcagtgt ctcagagact tgtaccaaca      2100
     agacgccaca gtcatagaca attatacaca gatcaaaaga ataaaggcca caattttaag      2160
     cctcaagcgg aagcaattgg aaggctgtaa aattcgcaca cggctacaaa atacagttga      2220
     agaagaaaca acttcaatgt accatattat acaagaacag aaaagaacaa accgaaaaat      2280
     tttgactgaa ctgaaagcag aacatggggg aactttgaca acacaacgcg acatacgaga      2340
     agaaatctat aaatatttta caacactgtt agctgacaaa ccagtagacg aagcggcgca      2400
     acaaaccgtc ctcgcaaggc tgaccgcgaa attaaacccg gaggaagcgg acgacctgtc      2460
     agcagacgta actgaagagg aagtggcaga cgccatacga agaagcgcga agaataagtc      2520
     ccccgggccc gacggattgc cagcagaatt ttatcacacc tttgaacaac agctagtcag      2580
     caagctgacg ctcgtgtgta acgaaatcct gaacgccaga agtgacatgt tactggaatt      2640
     ttgtgaaggt gtagtggtgt tagtccccaa agtgccagga gggaagaccg tcaacaacct      2700
     gcgtcccata acactactca aataccgact ataaaatctt cacgcgcatc ataacgcaaa      2760
     gattaacttc ggttataaca mgcatcaccg ggaattacca aacgagcgtc gggaaaaata      2820
     gaacaattca ccagacatta tgtgaatata gagatattat agcaactgca gaagccttga      2880
     atattccaag tgcactagta tctcttgatt tcgaaaaagc attcgacaga gttaaccatt      2940
     cttatctttt ccggactatg gaagtcatga atctcccaca aaaaattgtc actgtggtca      3000
     aaaacctatt gacaagttcc acgtcacgaa tatgtgtcaa cggtcaatta agcagaccgg      3060
     tcagaatcaa aagttcagta cgccagggtt gcccaatgtc cctggcctgt ttgcgatggc      3120
     gattgaacct ctgctgtgct ccctgacgca ggaccttgca gggctacaaa tacacggcca      3180
     tagaatagca tgtcaagcgt acgcwgacga cgtcagtttc gtgatcacgg gaggtgacga      3240
     actaggaaaa gcgttcaaaa atataaggam ctatgaagcg gcgtcaggag caaaattaaa      3300
     ctgtamtaag tcgggaataa tgcacatcgg ccggggatta gatcttaggg gcgacgtaca      3360
     aataaattgc gtagaaacta tcaaaacgct aggaattgaa tacacgagag atatccgccg      3420
     cacggctgcc ctcaactaca gaaaattgtt ggcaaaaatg cgagcggcca tacaacaaca      3480
     tggtttacgt aaactaagtg ccatacaaaa agtgcagtta gcaaacactt acataacatc      3540
     caaagtaaac tatgtcgccc aggtattgcc aataccgaag atcatagctc aacagatgct      3600
     agcagcgctc ggccactttg tcaccagagg gcaaattttt aaggtgcagt atgagacctt      3660
     aacgctacct ttaagtaacg gaggcttaaa cctgacaaac atttacaaga aatcacaggc      3720
     gctgttcgtc agcaagttgt acaagcagtg gcaacgatcg cccgatactc tcgcagctca      3780
     tctcttaaat gaaattgcac cgaccagtat ggatccacca gtagacgtgc accacattcc      3840
     gaacgcgctc tatcatatca gacattttct tgtcgaatta agttacattc gaagaaatac      3900
     tctcgaaaaa gacctataca aagtcaaaga agtttacaac aacatgatga gcaaccaaaa      3960
     cggaaataga atagagaaga agtacaaaga gtacaactgg gaaaaaattt gggagaacat      4020
     tcaagaccct cacttaccga cagaagtgcg gtcaacctgg tacacggcgg ttaacaggaa      4080
     aattcccaca aattcaaagt tacatgcaat tcacctagcg gaaactccaa attgcatctc      4140
     ctgtaactta gtggacacag aggaacaccg tttcacatgc gacgctgtca caaccgtctg      4200
     gactctctgc acaactaaac tcgctagtat gctgcgaaca tctcctcgaa ccattacccc      4260
     agctagactt ctccacccag acgaagttcc ctacccaagc acaaaacaca gagcagtaaa      4320
     ttggatcaaa ggacagacgg tgtactacat tctcacagaa aaagataaga gtaaagaaga      4380
     ctactggatt tatctcacga cagaacacga aaaacttaaa agaacgaaga aatatagaga      4440
     aaagtatgcg aattttttac ttagaacttt atcatagaaa tagcacggga aacacccgta      4500
     gaagaacttt tatttatgta tttaattttt tattcattct taaatgtctt ttaaacttct      4560
     gtgatttccg tacggtggcc tgagctattg ctgcctggta ctccaaagtc taccgagaag      4620
     gcaaacacat agtaaaagag aattagaaga aaagaaacac gaaaaacacg gcataaactg      4680
     cagtagcaga caatacgaga agacaacttt gaagcactcg gtaagccgaa atagcccctg      4740
     tgtagccgcg gaagtacaga gggagaaaaa gaacataaat tataatttac atggaggcaa      4800
     caattctgcc acttcttttc atttttcgaa agagaagatt tttacaacta cgaagtagga      4860
     gaagttttat tcggtttcaa gcttttattt tatcgtctgc agatgaagaa gtcatcaaga      4920
     cgatattgaa tttttttctg aagaggatgt ttcatttcgt aatcaagagg aaatttcttt      4980
     ttcattgtca atgaaaacaa taatatagct aagaagctag ccggagaagg ctataaatgg      5040
     cgagcggaag gacgggttgt aggggaaaaa aaaaaaaaa                             5079
//
ID   Tx1-14_CQ   repbase;    DNA;    INV; 4879 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-14_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4879
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 646-646 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1313
FT                 /product="Tx1-14_CQ_1p"
FT                 /translation="MEKRVRVNTLKVTFKRGSKEPTDAEMFQFCREQHFKP
FT                 EEIYSVHKDKELGAIMIKLKNENLMRAAIQALQPVLNFSYSDGTTTEVTVS
FT                 DADNSFKYVRVFNLPPEIDDKEIYQALSQYGTVRQQVRERYHQDTGFPVFS
FT                 TVRGLYMEISKEIPPQIRIRHFQARIYYDGLVNKCFICRSPDHVKQNCPRR
FT                 AAPVTKTPAQGRLYSDVAAVKSLLPGFLNRPLSETDSCQMTPLGKPVGGKQ
FT                 SPPDKPEVPVEPMEAAMEQSEGLTSPPSALQVQLVESPVFRPNLEPEGTPD
FT                 QGKQPDQEGKWQLQGRKGXSKKRPESFSPGADTSKKLLRSQSLRSRSRSQR
FT                 RHPKGVPETSEPQGALSTSDGQSDDQIFKKPLPPPSPSPEQQK"
FT   CDS           1243..4599
FT                 /product="Tx1-14_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MDNRTTRSSKNHCHHHPHPLNNRSKFNFYPKMTFSKK
FT                 IATINLNSIKTEVNKSLLRDFVQNEDLDFIFLQEVLFEDFSFLGAYRAFVN
FT                 ISEHDKGTAILVRKNQEFRNIIYDPSGRILSIVCDDINLVNVYAHSGTNKK
FT                 RERDDLFRDEITPHVIKGNCSHTVIGGDFNCVLNKRDSRSTSANLCQGLKD
FT                 LTTSMHLKDVANVRNGSNVEFTFHRAGSASRLDRFYVSAQFLDKVVEIRTV
FT                 PVAFSDHSAVVMKFLVDQSALCQRGRGYWKLNSSLLNKDDISCRYVVDFYQ
FT                 LKDREIYTRNRSTWWNTVVKPKTQFFFKNESRIFNCRINSAKSELYAKMYD
FT                 LAAERRNGADNRXQLQEVKSELMRMELDRLKFYGSRFPQTSMLEGEKXSVF
FT                 HVSNQMHKGCDGSQFQLRDGDDLITDSKRLKKKIEDFFTGTFQAEDSASLE
FT                 SSVEALRDVSNSLDLQQQQELVRPIDEAELKAVVAGAAKKKSPGPDGISYE
FT                 FYSVYFEMLKNDMLELFNRYLDGSLKPPKEFTAGIITLIPKVNQADNLNEF
FT                 RPISMLNTDYKIFTKILANRLHAVVGDLLGAGQVACTVNQSCSTNLIDVRT
FT                 IIAKAAESKRFKGFLLSVDLEKAFDKVNHVFLWKVLEKFGVPERFINCIKN
FT                 LYESATSRIIFNGILTSDVKIGSSVRQGCPLSMVLFVLYIEGLVRKLSANI
FT                 RGVLLSGKFIRVLAYADDLVILIRDDAEFDLVLQIINSFAEASCIRLNRAK
FT                 SAFIRINNAKGGPQQFREADEIKILGVIFTERWSAIVKRNFDKLLGDIQFR
FT                 LSKHRTRNLNLIERTWLLNVFVLSKLWYICQVFPPDNVHIAKLRKIAGQFI
FT                 WGPRQIFKTERKQLYLDYEQGGIKLVDPEAKAKALFIKTILYGTGNNQVED
FT                 TTLLNFSKKQALSRNTREWLELAVSLKPNPMSTSVQTLYRHFINENRTTPK
FT                 VEERFPALNWNQLWENLGQSFLSSECRSQMFLLYNDLVISKEKLVKYNIGR
FT                 LQDDLCEWCGVPESNEHKIKHCVKTEEIWQWLRRTLTDRLGICGDPEDVLT
FT                 RQINGRNQKEKAGLWLTMFLMSYIVKKYPKISLYCVQKGIRDSRWNNRTYF
FT                 KHCFGSELNVC"
XX
SQ   Sequence 4879 BP; 1385 A; 1090 C; 1263 G; 1136 T; 5 other;
     agacgttttt tctctattgc tcgtcgatag cgtattccaa gccttttatc tcaaccggaa        60
     caatggactc gtccgttgtg tgattgctgc gatctgcaga attctattgt gtgcgcgaag       120
     tgaggttata cccggatacc acgtttggtg gaaagatgga gaaaagagtg cgagttaaca       180
     cgttgaaggt taccttcaaa cgtggttcta aggaacctac ggacgcggaa atgttccagt       240
     tttgccggga acagcatttc aagccggaag aaatctactc ggtccacaag gacaaggagt       300
     tgggagccat catgatcaag ctcaaaaatg agaatttgat gcgtgcggcc atccaggccc       360
     tgcagccggt actgaacttc agctactcgg acggaacaac cacggaggta acagtttcgg       420
     atgcggacaa ctctttcaag tacgtgcggg tcttcaatct tcccccagag attgacgaca       480
     aggaaatcta tcaggcgttg tcgcaatacg gcactgtccg gcagcaggtc cgggaaaggt       540
     accatcaaga taccgggttc ccggtgtttt ctacagttcg cggactgtac atggagatca       600
     gcaaggagat acccccacag atccggatcc gacacttcca agccagaatt tattatgatg       660
     gtcttgttaa caagtgcttc atttgccgga gccccgatca cgtgaagcag aactgtcccc       720
     gacgagcagc accagttacc aagaccccag cgcaaggacg gctgtacagc gatgtggccg       780
     cggtgaagtc tctgctgccg ggttttctga accggccgtt atcggaaaca gattcctgcc       840
     agatgacgcc ccttggcaag ccagtcggcg ggaagcagtc tcccccagac aagccggaag       900
     tgccagttga accaatggaa gcagcaatgg agcagagtga aggtctgaca tccccaccgt       960
     cagctctgca agttcaactc gtggagtcgc ccgtctttcg tcctaatttg gaacctgaag      1020
     ggacaccaga ccaaggcaaa caaccggatc aagaagggaa gtggcagctt caaggtcgga      1080
     agggamgttc gaagaagcga ccggagtcgt tttcgcctgg agcagatacc tcgaagaagt      1140
     tgctgaggtc gcagtcactt cgctcgmgga gtaggagtca gcgccgtcat cctaagggag      1200
     ttccggagac aagcgagccg cagggagcgc tttcgacgtc tgatggacaa tcggacgacc      1260
     agatcttcaa aaaaccactg ccaccaccat ccccatcccc tgaacaacag aagtaagttt      1320
     aatttttatc ctaaaatgac cttctcgaag aaaattgcca ccattaatct aaatagtatt      1380
     aagacagaag tcaacaaatc actgcttagg gatttcgttc agaacgaaga tcttgatttt      1440
     atattccttc aagaagtttt attcgaagat ttttcattcc tcggagctta ccgagctttt      1500
     gtgaacataa gcgagcatga caagggaact gccattcttg tgagaaagaa tcaggaattt      1560
     cggaacatta tttatgatcc tagtggacgt attctgtcca ttgtctgtga cgatatcaat      1620
     cttgtcaatg tttatgctca ctccgggacc aacaaaaaac gcgaacggga cgacctgttc      1680
     agggatgaga tcacgccgca cgtgatcaag gggaactgct cacacactgt cattgggggg      1740
     gacttcaact gtgtccttaa caaacgtgac agccggagca cctccgcgaa cttgtgccag      1800
     ggattgaaag atttgacgac ctcgatgcat ctcaaagatg tggcgaatgt gcgtaatgga      1860
     tcgaatgtcg aattcacgtt ccatcgcgct ggatcggcat cacggctaga tcggttttac      1920
     gtttcggctc agtttctgga caaagttgtt gaaattcgaa cggttccggt tgccttctcg      1980
     gaccattcag cagtagtgat gaagtttttg gtcgaccagt ctgcgctttg tcaacgcggg      2040
     cgaggatact ggaaactcaa cagcagtctt ctcaacaagg acgatatctc gtgtagatac      2100
     gtcgtcgact tctaccagct caaggatcgt gagatttaca ccagaaacag aagcacttgg      2160
     tggaacacgg tagtcaagcc taagactcag tttttcttca agaatgagag caggatcttc      2220
     aattgccgca tcaactctgc gaagagcgaa ctgtatgcca agatgtacga ccttgcggcg      2280
     gaaaggcgaa atggagctga caacaggamm caacttcaag aagtaaaatc ggagctgatg      2340
     aggatggagt tggatcgttt gaagttctat gggtcgagat ttccccaaac ttcgatgcta      2400
     gaaggagaaa aawtgagtgt cttccatgtt tctaaccaga tgcacaaggg ttgcgacggc      2460
     agccagttcc agttgcgaga cggagatgat ttgattacgg attcgaaacg tttgaagaag      2520
     aagatcgagg acttctttac gggaactttt caggcggaag attcagcaag cttagaaagc      2580
     tcagtggaag ctctcaggga tgtgtctaac tctttggact tgcagcagca acaagaactc      2640
     gtaaggccga tagatgaagc ggaactcaag gctgtggtcg ctggtgcggc caaaaagaag      2700
     tcacctggac cggacggaat atcctacgaa ttttactccg tgtattttga gatgttaaag      2760
     aacgacatgt tggaactgtt caaccgttat ctggatgggt cattgaagcc gccaaaggaa      2820
     ttcactgctg gaataatcac tctcattcca aaagtgaacc aagcagataa tctaaacgaa      2880
     ttcagaccaa tatcgatgct caacacggac tacaagatct ttacaaagat tctggcgaac      2940
     cggctccacg ctgtggttgg agatttgctg ggtgctggac aggtagcttg cacggtcaac      3000
     caatcgtgct ccaccaactt gattgatgtg agaactatca tcgccaaggc tgcggaatca      3060
     aaacgtttca aaggtttcct actgagtgtg gatttggaga aagctttcga caaggtgaat      3120
     catgtcttct tgtggaaagt gttggagaaa tttggtgtcc ctgagcggtt catcaactgc      3180
     atcaagaacc tgtacgaaag tgcaacatca cggatcatct ttaatggaat tctcacatcg      3240
     gacgtgaaga tcggaagctc tgtacgccaa ggatgccctc tgagcatggt gctgtttgtg      3300
     ctgtatattg aaggattggt gcggaaatta tcggcgaaca tccggggagt tttactgtct      3360
     ggaaagttca ttcgggtgtt ggcgtacgcg gacgacttgg tgatactcat cagggatgac      3420
     gcagagttcg atttggtgct ccaaattatc aactccttcg ctgaagcatc ctgcattagg      3480
     ctcaaccggg ccaaatcagc atttattcgt atcaacaacg cgaaaggtgg tccacaacaa      3540
     ttcagggagg cagacgagat caagatcctc ggagttatat tcaccgaaag gtggtccgca      3600
     atcgtcaaac ggaattttga taagctactt ggagacattc agttccgttt gtcgaaacat      3660
     cggacccgta acctaaattt gatcgaacgg acgtggctac tgaacgtttt cgtgctgtcg      3720
     aagttgtggt acatttgtca agtgttccca ccagacaatg tgcacatcgc aaaactccgg      3780
     aagattgctg ggcagttcat ctgggggccg aggcagatct tcaagactga gaggaagcaa      3840
     ctttatctgg actacgagca aggagggatc aagctggttg accccgaagc gaaggcgaag      3900
     gcacttttca tcaagaccat tctgtatggg actggcaaca accaggtaga agacacaact      3960
     ttgctaaatt tttcaaaaaa acaagcgctg agccgaaaca ccagagagtg gctagaatta      4020
     gcagtatcac tcaaaccgaa tccaatgtca acatccgtgc aaactctgta caggcacttc      4080
     atcaacgaaa atcggacaac acccaaggtg gaggaacgat ttccagcttt gaattggaac      4140
     cagctgtggg aaaatctcgg acaaagcttc ctgagtagtg agtgccgctc tcagatgttt      4200
     ttgctgtaca acgatctggt gatctcgaag gaaaaactgg tcaagtacaa cataggacgg      4260
     ctgcaagatg atctgtgtga gtggtgtgga gtcccggaga gcaacgagca taaaatcaag      4320
     cattgtgtaa agacggaaga aatctggcag tggcttagaa gaacgttgac tgatcgtttg      4380
     gggatctgtg gagatccaga ggatgtactg actaggcaaa ttaacggaag gaatcagaag      4440
     gaaaaagcag gactgtggtt gacaatgttt ttgatgtcgt acatagttaa aaagtatccc      4500
     aaaatcagtt tgtattgcgt tcaaaaagga attagggaca gtagatggaa taatcgcacg      4560
     tatttcaagc attgttttgg cagtgagctc aatgtttgtt agtgtattag gagaacccac      4620
     ggttgcccgg gagacccggg gcccccctga ccacaagtca cttccgagtg gaacagggac      4680
     caccccccgg gctcctcggg caaccgtggt ggcctgggag ccggggcccc cccgaccacc      4740
     caccccccgg gctcccatgg cgaccttgga aaagctgtgg aacaaatgta aaggattgga      4800
     ggtggaacaa atgtaaagga ttgtacaaat gtagaaataa aaacttgtaa aaacccaaaa      4860
     aaaaaaaaaa aaaaaaaaa                                                   4879
//
ID   Tx1-14_LMi  repbase;    DNA;    INV; 5528 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5528
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3494-3494 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(156..926,716..1534)
FT                 /product="Tx1-14_LMi_1p"
FT                 /translation="MAEPVRVDTLKFMFDKSFARPSSFEVENFMEEVVKIA
FT                 EDDMIGICPSICSSTVFIKLKNAKMCDDIVVRCGGKLKFKHSDGNIGEVRV
FT                 SHAGFGIRTLRIFELPFEITADDINAVLKPYGTVISNVAERWTGAHKFKVL
FT                 NGVRQVKIDMIKHIPSYISVRGHRAIVIYEGQPRTCAGCGGTGHVRAECMQ
FT                 RRVAQLPTGEAVVQNTMSQLPLTYVAAARASAPGLRPQSWRYLISKNKLRK
FT                 SEWKPTSQNIMTGKWLMYAKESGAAANRRSSGSEHDVAATADLRCGSSRVR
FT                 TWATTAELEVPNIEEQIEEIGMETDVPEYNDGQMAVELPAENEERQSAALE
FT                 HDTSNTEVPNVALTNEQETEHDSQTVTSGETSTDKQSTDNKKRRIAHQGAE
FT                 KTAPALREKAKQLRQKPNDTTGKTRDSSQKTVKKSRTEDSYGGVTETSGNS
FT                 VNMKTTTKTKADSDEQPHDLTEWKKEKRKGNLPQNWADDHEDANQDQELME
FT                 TNDEMTQKTDEHGTNDNRPSPAKDTAVTDDPDFY"
FT   CDS           join(1648..2115,2109..3689,3744..4955)
FT                 /product="Tx1-14_LMi_2p"
FT                 /translation="MTELQAYRLATININKIRSALKLRILQDVIYAADIDI
FT                 VMLQEVTDAIDLDQITGYNVIANPGYTTELGTAILTKEGIIVRQIERNSMY
FT                 NKQHQNSQCLRAFRNWKKTATEEFFKDGIVPLFGTGHDHVIFAGDFNCVIH
FT                 PKDQTPNYNKSVELETLNIVNQLGLVDTWEYTHGNMPGFTHVTNHSASRLD
FT                 RMYASADLKERILHSEIWPTVFSDHAAFMCTINLEKQGTYKARGQWKLNVS
FT                 HLSDPGCREAFDTTWEACEKRFPQYSSPITWWIKCAKPAITRTMKNYSREK
FT                 NEWQKKTVEFYFQCLRELYKRDAAIINNYVQIKRIQAKIINLKRKQLEGCK
FT                 IRSRQHNTVQDETTSVYHFIQEHKRKSRKILTELRASDGRLLTNQRDIKEE
FT                 MQKHFSELLATKPTDETAQKDFTTRVPGRLSPEEASSLTAEITEEEVEDAI
FT                 LRSPKNRSPGPDGIPAELYQTFRQKLLSKLTSICNELMNHSTNIPKEFCEG
FT                 TVVLVPKTTAGKSISNLRPITLLNSDYKIFMRILMQRLRAVINTVTGPYQT
FT                 SVGKDRRIFHALSDYRDIIAIAETCKIRCAIVSLDFEQAFDRVNHDYLYNT
FT                 MRAMNFPPQFIEMIGHLLKNGTSKININGQLTSXIXINSSVRQGCPLSVLL
FT                 FAIAIEPLLCTLTQELRGLQIHGKILSANHMLTTEVRTCICCQTSNVKSRI
FT                 MTIGSSNNIRAEGQLTETDRLKCLGIVYTRNIRQTAALNYKRILTSMRAGI
FT                 QLHSLRNLDEIQKVRLVNTYITAKVNYVAQVLPLPKEMGKRMLAALGHFVS
FT                 KGQIFKVKYETLTLMHKDGGLNLTDVYSKAQALYICKTYQQWKVSANNLVA
FT                 HLLDEIAPISMDPPVDVRHIPNELYHLKHFLIEYSYIRRAVPQKNMQRVRE
FT                 VYKSLIDRKPRNVIEQKHNHFNWKKIWENIHDRNLPTNVRSTWYLAVNRKI
FT                 PTALRLHTIHMAESPNCSTCNLIDTDEHKFTCDKIKDIWGYVRHVLSLMLR
FT                 TSDNSITPTKLLHPEEVPYPNAKRNAVNWIMGHAVFYILRNEEKSKEDFLM
FT                 YLTIQHHQLEQIKDYRTLYANFLKKTLTSK"
XX
SQ   Sequence 5528 BP; 1926 A; 1117 C; 1225 G; 1255 T; 5 other;
     gccgcggtgg ccagtggacg agcggtgcat tccgctgtcg gcgggcgagc ggtaaggacg        60
     tgctgtgttt acgtcgcagc tgcggctggc cgagcgctgt gttggtgagt ttaacgccgt       120
     agagcgtttc ctcatgtatt caacttagac taaccatggc agaacctgta agagttgaca       180
     cgttgaagtt tatgttcgac aaaagctttg ctagacctag ttcgtttgaa gtagagaatt       240
     tcatggagga ggttgtaaag atagcagagg atgacatgat tggaatttgc ccatcgatct       300
     gtagtagcac agtcttcatt aagttgaaaa atgccaagat gtgtgatgat attgttgtta       360
     gatgtggagg taaattgaaa tttaaacact cagacggtaa tatcggcgaa gttagagtga       420
     gtcatgctgg gtttggcatt agaacactac gcattttcga actgccattc gaaattaccg       480
     ctgacgatat aaatgctgtt ctgaaaccct atggaaccgt tatcagtaat gtcgcagaga       540
     gatggacagg tgctcacaaa tttaaggttc ttaatggtgt gaggcaggtc aaaatcgata       600
     tgatcaaaca cataccttct tatattagtg tccgtggcca tagagctatt gtgatatatg       660
     aaggacaacc tagaacgtgt gcaggatgtg gtggtacagg acacgttcgt gctgaatgta       720
     tgcaaaggag agtggcgcag ctgccaacag gmgaagcagt ggttcagaac acgatgtcgc       780
     agctaccgct gacttacgtt gcggcagctc gcgcgtccgc acctgggcta cgaccgcaga       840
     gctggaggta cctaatatcg aagaacaaat tgaggaaatc ggaatggaaa ccgacgtccc       900
     agaatataat gacgggcaaa tggctgtaga actgccagca gaaaacgaag aacgtcaatc       960
     tgcggctctt gagcacgaca cttcaaatac agaagtcccg aatgtggcat taaccaatga      1020
     gcaggagacg gagcacgact cccaaacagt tacgtccggt gaaacgtcga cggataaaca      1080
     atctacggac aataaaaaac gtcggattgc ccaccaggga gctgaaaaaa ctgcacctgc      1140
     actgcgagag aaagcaaaac agttgcgaca gaagccgaac gacacaacag ggaaaacgcg      1200
     tgacagcagc cagaaaaccg tcaaaaagtc acggacggaa gactcatacg gcggcgtcac      1260
     ggaaacgtca ggaaactctg tgaacatgaa aacgacgaca aaaactaaag cggacagtga      1320
     cgaacaacct catgacctca ctgagtggaa aaaggaaaaa cggaaaggta accttcctca      1380
     aaactgggct gacgaccatg aagatgccaa ccaagaccaa gaattgatgg agacgaatga      1440
     tgaaatgaca cagaagactg acgaacatgg aactaatgac aatagaccct caccggcgaa      1500
     agacacagca gtaactgatg acccagactt ctattaaact gaaatttgtt agtagcaaga      1560
     tggaaggaaa gatagaaagt atgatagaat gatagaatta cagaaagttt agaatttaaa      1620
     aacaaaatag atcattacca atataatatg acggaactac aagcatatcg gttagccaca      1680
     ataaacatca acaagataag gagcgcactc aaactgcgaa ttctccagga cgtgatatat      1740
     gccgcagata tagacatcgt tatgttacaa gaagtgacag atgctattga tctggatcaa      1800
     ataacaggat ataacgttat agctaaccct ggctatacta ctgaactcgg aacagccatt      1860
     ttaacaaaag aaggtattat agtcagacaa atagagagga atagcatgta caataaacaa      1920
     caccagaata gtcaatgtct acgcgccttc aggaactgga aaaagacggc aacggaagaa      1980
     tttttcaaag acggaatagt accgctcttt gggacsggac atgatcatgt aatatttgcc      2040
     ggggacttta attgtgtcat acacccaaag gatcagacgc caaattataa taaatcagtt      2100
     gagcttgaaa cattgtaaat cagttaggac ttgttgacac ctgggagtat acgcatggta      2160
     acatgccagg cttcacgcac gtcactaatc actcggcaag tcgtttagat cggatgtacg      2220
     catcagctga tcttaaggaa cgtatcctac attcggaaat atggcccacc gtcttctcag      2280
     atcacgcagc ttttatgtgt accattaatt tggagaaaca agggacctat aaggcccgag      2340
     gtcagtggaa acttaacgtt agccacttgt cggatccagg atgtcgtgaa gcatttgaca      2400
     ctacgtggga agcatgcgaa aaacggttcc ctcagtacag ctcaccgatc acttggtgga      2460
     ttaaatgcgc taaacctgca ataacgagaa ccatgaagaa ttactcccgg gagaagaatg      2520
     agtggcagaa gaaaacagta gaattttatt ttcagtgtct gcgagaattg tataaacggg      2580
     atgcagcaat aattaacaat tatgtacaga ttaagagaat tcaagctaaa ataatcaatt      2640
     taaagaggaa acaactagaa ggatgcaaaa tacggtcacg gcagcacaat accgtccaag      2700
     acgaaacaac ttccgtatac cacttcatac aggaacataa aaggaaaagc agaaaaattc      2760
     ttaccgagct gagggccagt gatggacgat tattgaccaa tcaacgcgac ataaaggaag      2820
     agatgcagaa gcatttttca gagctcctag ccacgaaacc tacagacgaa acggcacaaa      2880
     aggacttcac gacacgggta ccaggaagac tcagtccgga agaagcaagc agcctcactg      2940
     ccgaaatcac agaagaggaa gtagaagacg cgatactcag aagtccaaaa aatagatcac      3000
     ccggacctga cggtatcccg gcagaattgt atcaaacgtt cagacaaaaa ctgctcagta      3060
     aactaacgag catatgtaat gaacttatga accacagtac caacatcccc aaagaattct      3120
     gcgaggggac cgtggttctc gttcccaaaa ccacagcagg caagtccatc agcaatctca      3180
     ggcctataac gcttttgaac agcgactaca agatcttcat gcgaattctg atgcaacgtc      3240
     tccgtgcagt aataaacact gtcacaggac cgtaccaaac aagtgtaggc aaagacagaa      3300
     gaatttttca cgcgctaagt gattacaggg acataatagc gatagctgag acatgtaaaa      3360
     ttagatgtgc aatagtgtca cttgattttg aacaagcatt cgacagagtc aatcacgatt      3420
     atctttacaa caccatgaga gcgatgaatt ttcctccaca attcatcgag atgatcgggc      3480
     atttattaaa gaatggcaca tcaaaaatta atataaatgg acaattaacc agtscaatam      3540
     agatcaatag ctctgttagg caaggatgcc ccttgtccgt gttattattt gctatagcca      3600
     tcgagcctct cctatgtaca ctaacccaag agttgcgggg attacagata catggcaaaa      3660
     tattgtctgc aaatcatatg ctgacgacgt aggacttgta gtaagaagtg aacaggagct      3720
     ccaaaccgtc ttgacattat taagaagtac gaacttgcat ctgctgccaa accagcaatg      3780
     taaagtcaag aattatgacc attggaagta gcaataacat cagagcggaa ggacaactga      3840
     cggaaacgga cagattgaaa tgtctaggta tagtttacac acggaatata cgacaaacgg      3900
     ctgccctcaa ttacaaaaga atattgacga gtatgagagc cggaatacaa cttcacagcc      3960
     tgcgaaacct cgatgaaata caaaaagttc ggctagttaa tacatacata acggccaaag      4020
     tgaactatgt agctcaagtt ctgccattac ccaaagagat gggaaagaga atgctcgcag      4080
     cgctcggcca cttcgttagt aaaggtcaga tttttaaagt caaatatgaa acccttacac      4140
     taatgcacaa agatggcggc cttaatctca cagatgttta cagtaaggca caggcgcttt      4200
     acatctgcaa gacctaccaa caatggaaag tttcggccaa caacttggtg gctcatcttc      4260
     tggatgagat agccccaatc agcatggacc cgccagtaga tgtgcgccac atcccgaacg      4320
     agctgtatca cctcaaacat tttctcattg aatacagcta cattcgcagg gcagttcccc      4380
     agaaaaacat gcaacgagta cgagaagtct acaaaagctt gatagacaga aaaccgagaa      4440
     acgtgataga acagaagcat aatcatttta actggaagaa gatatgggag aatattcacg      4500
     accgaaattt acccacaaac gtaagatcta cttggtattt agcagtaaac aggaagatcc      4560
     cgacggcttt acggctacat accatacaca tggcggaatc accaaattgc agcacgtgta      4620
     acttgataga cacagacgag cacaaattta catgtgacaa aatcaaggat atttggggtt      4680
     atgttcggca tgtactctcg cttatgctac gaacatcaga taactctata acaccaacga      4740
     aactattaca ccccgaagaa gtgccatacc caaatgccaa aaggaatgct gtcaactgga      4800
     tcatgggaca tgcggtattc tacattctta gaaatgaaga aaaaagcaaa gaagactttt      4860
     tgatgtattt gacaatacaa caccaccagt tagaacagat aaaagattat cgaacactat      4920
     atgcgaattt tctaaagaaa acattgacgt ctaagtaaat atctacacaa ttttatttaa      4980
     ttactttttt ttttactaaa gtgacagcct cttaagttgc ttatatataa ttacaaggaa      5040
     aagttttgcg tttataaaca gatttaagtt ttctttgaat tttckgtgca gaaaagccga      5100
     aataatttat aacttgaact attcaacata gaagctcatt ggaaagaagt acagctttca      5160
     gtcctctttt atcaaatgca aaaggaagtg caacactgag ttctggtata taccatggaa      5220
     gaaatatttc tgttaacaaa aatgaagaat agaaaagatt ttgatttcac agaaaggcaa      5280
     tgaagcctag ccgaagaagg catatctgga gagtgaaagg acgggctaga aggggagatg      5340
     ggaggcccga aaaaaaaaaa aaagaaaaaa agcggtaaga cgtctgccta gtaagcatgg      5400
     aggtccgggt tcgattcccg gccgcatcac aaattttaat tcaatgcttc agtttatcta      5460
     atgtctttga catattcgag acgaaatccg tctcagggat tgcatatttg tatttacatt      5520
     gatatttg                                                               5528
//
ID   Tx1-15_CQ   repbase;    DNA;    INV; 2098 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-15_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-2098
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 647-647 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >96%
CC   identity.
CC   3'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           152..1402
FT                 /product="Tx1-15_CQ_1p"
FT                 /translation="MEPKRENTIKLRFGAGARNPNNGEVFKFFTKQQWTSD
FT                 VLSAMYRDDFCVFIRFKSDELMQGALVQLGNRVNFEYDDGTTVWVNVTAAN
FT                 GTFKYVRIFGLPPEVDDRQISAAMCKFGTIQLMVRERFPVETGFPIWNGVR
FT                 GLHMEVTAAIPAQVNIQHVKARIYYDGLQNKCFACGALDHLKANCPNRKPV
FT                 NGRLTVLTKPSEGSFASIVTNGTAALPLPTPTMVVLNKPGGSQEAGTKGNG
FT                 SDLADQQPAGQESAVQQPAAQVVPDQESLEDRPANGSSTDGASGRSDADVG
FT                 ELGGTESTGKQSNEQSALLLNPLFSDEIREVADSEMVIINPGDNERSDETM
FT                 ENAEAWSEQKGKGKKKGKRGRPKKSVPDTSGSDTRGGKQFIVPATLKDLLL
FT                 SQERRSRSRSRAVSEGGRRRGKK"
FT   CDS           1569..2096
FT                 /product="Tx1-15_CQ_2p"
FT                 /note="apurinic-like endonuclease."
FT                 /translation="MNFVYTIATINLNSSNCKANKGLLKDFIMNHDIDVAF
FT                 LQEVSYEDFSFVYTHNALVNISSDKKGTAILIRKTLEFSDYILDLSGRITS
FT                 VIVNNVNMINIYAHSGNNMRKERDHLFTEALTIHLNKPKCAFTLIGGDFNC
FT                 VLDAKDTKGTQNNFSSGLKNLVDLLSLQDIAKTRKAN"
XX
SQ   Sequence 2098 BP; 606 A; 447 C; 573 G; 472 T; 0 other;
     cagttcacag ccagagttca agtgacaaag acgtgttttt caagtcgctc tcgcatacta        60
     cattgttgtg aatagttggt gtcggacatt gtccggctgg cattgtttgc cagcaaattt       120
     gcctttactc ggaacattcg cagcagccga aatggaaccc aagagggaga acaccatcaa       180
     gctccggttc ggagctggtg caaggaaccc gaacaatgga gaagtcttca aattcttcac       240
     gaagcagcag tggacgagcg acgtgctcag cgctatgtac cgggatgact tttgtgtctt       300
     catccggttc aaatcggacg agctaatgca gggtgccttg gtgcagcttg ggaacagggt       360
     caactttgag tatgacgacg gtacgacggt gtgggtcaat gttacggccg caaacggcac       420
     gtttaagtac gtccggatct ttgggttgcc gcccgaggtg gacgacaggc agatctctgc       480
     ggccatgtgc aagttcggca ccattcagct gatggtgcgg gaaaggtttc cagtggagac       540
     cggctttccg atctggaacg gggttcgcgg actccacatg gaagttacgg cagcgattcc       600
     agcacaagtg aacatccaac acgtgaaagc gaggatttac tatgatggct tgcaaaacaa       660
     atgctttgcc tgtggagcac tcgaccatct gaaggccaac tgcccaaacc ggaaacctgt       720
     aaacggcaga ctcactgtgc tgaccaagcc gagcgaggga tcgtttgcca gcattgtcac       780
     gaacgggacg gcggctcttc cactaccaac gccaactatg gtggtgttga acaagccggg       840
     aggaagccag gaggcgggaa cgaaggggaa cggaagcgac cttgcggatc aacagcccgc       900
     tggtcaggag tcggcagtcc aacagcctgc agctcaagtt gttcctgatc aggagagctt       960
     ggaagatagg ccggcgaatg gaagttctac ggacggggcc tcgggtcgat ctgatgcgga      1020
     tgttggggag ttgggcggga cggagtctac gggtaagcaa tccaacgaac agagcgcatt      1080
     gctgctcaat ccgttgttct cggatgagat acgggaagtg gcagactcag aaatggttat      1140
     catcaatccg ggtgataacg aacgaagcga cgaaacaatg gagaatgctg aggcttggtc      1200
     ggaacaaaag gggaagggaa agaagaaggg aaagcgaggt cgcccaaaaa agagcgtacc      1260
     agatacctcg ggatctgaca cgagaggggg taaacagttt attgttccgg ctactctcaa      1320
     agatctgctg ctctcgcagg agagacgatc acgatcgcga agtcgggccg tgtctgaggg      1380
     gggccgtagg aggggtaaga agtgagggag gggagggggg ggggaaggga atatctctat      1440
     cacacgcctt ctaacaccaa cacaagccat aagatttact aacacccaac tagcaatact      1500
     aacccaaact tttcactaac acaacaatat gtcgaaacta acactagatt actaacacta      1560
     gtttaattat gaattttgta tatacgatcg caaccatcaa tttgaacagc agcaactgta      1620
     aagctaacaa aggtttgtta aaagatttta taatgaatca cgacatcgat gtagcgtttc      1680
     tgcaggaggt aagctatgaa gatttttctt ttgtttatac tcacaatgca ctagttaata      1740
     tcagttctga taaaaaaggt acagctatct taattagaaa gacgctggag ttctcagatt      1800
     acatactcga tttgtccgga agaataacat cagtcattgt taacaatgta aatatgatca      1860
     atatctatgc tcattctgga aacaacatgc gtaaggaacg ggaccattta ttcacggaag      1920
     ctttgacgat tcatttaaac aaaccaaaat gcgcatttac gcttatcggt ggggatttca      1980
     attgtgtttt ggatgctaag gacacgaaag ggacgcaaaa taatttttcg agtggattaa      2040
     aaaatttagt ggatcttttg agcctacagg acattgccaa gacgcggaaa gcaaatca        2098
//
ID   Tx1-15_LMi  repbase;    DNA;    INV; 5446 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5446
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3495-3495 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(130..1008,860..1288,1236..1478)
FT                 /product="Tx1-15_LMi_1p"
FT                 /translation="MNQPLRKDTLKFMFNEQFVRPRAFEVEAFLRDVVKLN
FT                 VNEIIGIHLSIVSSTVYVKMISSECCDKVTERCRGHLKFNHCDGNVGXVQI
FT                 DYAGFGIRTVRIFELPFEITAEQINSVLKPYGRIISNTAEKWTAFQTFPVL
FT                 NGVRQVKXELQKHIPSYIYVCGYRAIAMYDGQPRTCSGCGQSGHVRSECVQ
FT                 RRVTQLPAGEPVAPMTMTSLPVTYATALRVNTATTSSAAMGGNDXVXEDGL
FT                 SLAMDVGAAEKSTVADSDKTETATKEERQTNPEDKSGRGVRRDEERWCSTR
FT                 PQWMLVPRKNRLSLTPTKQKQPLKKNVKQTQKISPEEEYGEMKSDGAAQDL
FT                 STTSETEGSQESRSSPKKHKKRRLAPPDAKQNAQATREKAKEIARKLSEKT
FT                 PGISERRHQTTNSAANXNLKNVEMTTQQDVEMEXSAKATVAEQPNRMWKWN
FT                 XLQRQQLQNKTPPXLXPEKEMHHRNEGRNWADXVDYPKDEDMKEATSPXRD
FT                 SFSALMGGKMKGLSHPRPVQQ"
FT   CDS           join(1622..1708,1695..2045,2049..2630,2597..3865,
FT                 3980..4174,4114..4791)
FT                 /product="Tx1-15_LMi_2p"
FT                 /translation="MLYAADIDIAMLQEVTDITLDATIGYNELDIMNCKFR
FT                 DDHELGTAILSKEGIIVKDVEKLPNARGIAATVNNTRLINIYAPSGTSNRR
FT                 GRAVFFKEDMVPLFCGRYDQIIFGGDYNCVLSAKDQTPNFNYCAELDAIIK
FT                 QLILTDTEHKNGALPGFTYITNHSASRIDRIYVSANLKQHVLHTELWPTIF
FT                 SDHIAYICTVNLTRQQTYRGRGLWKLNTEHLKDPECHEVFQNVWKECEKRF
FT                 PSYPSALTWWLKCAKPTIRRALINYSREKMAWQKQTTEFYFKVLRDLYRSD
FT                 TPVINKHLEIKRIQAKLIALRRKQLDGCKIRSRLQNDIRGEIHQYTMLYTW
FT                 RNTSIYHVINERKGQRRKIITEIITADGRVLTQQSDIKTEIQNYFAELLNN
FT                 ATTDVTAHNELTTGLTRKLDQEEAATLLTEITEEEVEDAIIRSPKNKSPGP
FT                 DGIPAELYHTFRRQMIPKLICICQELMNPNTNIPSDFREGTIVLIPKTPAG
FT                 KSVSNFRPLTLLNCDYKIFSRIINERLKSVLNTVTGAYQSSVGKERSIHHT
FT                 VTDYRDIISIAEVCKIKCAMVSLDFEKAFDRVSHDYLFHVMCAMNFPQRYI
FT                 AIVKNYLNHSTSRIMVNGQPSRPIIINSSVRQGCPLSMSLFAIAIEPLLLS
FT                 LSQNLQGIVTNGQKVVIRAYADDVMFLVRDNNEIIKALEIIQKYELASGAK
FT                 LNRKKSAVMNIGPDRSSHPRTIKERAKMPWIEYTRTFAHNCNKLQEDTEHH
FT                 SARYNNKSQETRIKLKHDVTNRQGGLNLINYIQAQPDQQTTSSGRHWNSVV
FT                 KFLLNEIAPPNHDAHRCHQFPTNFSXNSAAQPRRSSMSPIPNELFXLKHFL
FT                 IEYSYIRMCLPEKDLIRVKEVYKTFMKNHSENIIEQKYRHFNWQNIWRNIH
FT                 HPQLPTHVKAQWYYAVNRKIPTNSKLHAIHLADSALCTACKINDTDEHQFV
FT                 CGNANNIWQSVRRILAIIQRTSPHTITPTNLLHPDEALYPNTKNNAVNWLK
FT                 GHTVFYILSNKEKSEGDFWTYIATQHQTLLQMNNYHKHYANFLKRTIM"
XX
SQ   Sequence 5446 BP; 1910 A; 1121 C; 1109 G; 1283 T; 23 other;
     cagtctgctt tcggcgggcg agctgtgtgg ttcgtgttta cgtcctcgct gcggccggcc        60
     gtgtgttgac actgtgtggt gagttggacg ctctcgcagc gcatatagta gttatattcc       120
     aacataaaga tgaatcaacc cttaagaaaa gacaccttga agttcatgtt taacgaacag       180
     ttcgtcmgac ctagagcttt tgaagtagaa gckttcttaa gagatgtagt taaacttaat       240
     gtgaacgaaa taatagggat ccatttatcg atcgttagta gcacggtcta tgttaaaatg       300
     atcagttcwg agtgctgtga taaagtaact gaacgttgtm gaggacacct taaattcaat       360
     cactgcgacg gcaatgttgg cgawgtacaa attgattacg ctggttttgg cattagaaca       420
     gtccgcatat ttgaactccc atttgaaata actgcggagc agattaattc agtcctcaaa       480
     ccatacggga gaattattag taatactgcg gaaaagtgga cagcttttca aacttttcca       540
     gtactaaacg gtgttcgaca agtkaaamta gaactacaaa aacatatccc ttcgtatatt       600
     tacgtatgcg gatatagagc cattgcmatg tacgatggtc agccacgtac ttgctcagga       660
     tgtgggcagt caggtcatgt taggtcggag tgtgtacaac gtagagtgac gcagctgccg       720
     gcaggggaac cagtcgctcc tatgacgatg acgtcactgc cagtgactta cgccacggcc       780
     ctccgcgtta atacggccac cacgtcgagc gccgcaatgg gcggaaacga tgwcgtamat       840
     gaagacggtc tgtcactagc aatggatgtt ggtgccgcgg aaaaatcgac tgtcgctgac       900
     tccgacaaaa cagaaacagc cactaaagaa gaacgtcaaa caaacccaga agataagtcc       960
     ggaagaggag tacggagaga tgaagagcga tggtgcagca caagacctta gcacgacttc      1020
     agagactgag gggagtcagg aatctcgatc ctctcctaaa aaacataaga aacggcgttt      1080
     agctcctccc gacgccaaac aaaatgcaca ggcaacgcgt gaaaaagcga aagaaattgc      1140
     tcggaaatta agtgaaaaaa cacctggaat ttcggaacgt agacatcaga cgacaaactc      1200
     agcggccaat gamaatctga aaaatgtaga aatgacaacc caacaggatg tggaaatgga      1260
     acwctctgca aaggcaacag ttgcagaata agaccccacc tagwcttgst cccgaaaaag      1320
     aaatgcacca tcgcaatgaa ggaagaaact gggcagatka agtggactac cccaaagatg      1380
     aagatatgaa agaagctacg agtccamaaa gagactcgtt ctccgcacta atgggaggga      1440
     aaatgaaagg gctatcgcat ccacgaccgg tgcaacaata atataaggcg tcatgcgcat      1500
     gttataacat ctaatatata gagtcagtct acatctcaca attgcgttac aatcctacag      1560
     aattgcgacg ataaatatca ataagattcg tagttattta aaactgaaga ccttacagga      1620
     catgttatac gctgccgaca tcgatattgc tatgttacaa gaagtaacag acattacact      1680
     tgatgcaaca ataggatata atgaattgta aattcaggga cgaccatgaa ctcggcacgg      1740
     caattttaag taaggaaggc ataattgtaa aagatgtgga gaaactgcca aatgcaaggg      1800
     gtatagccgc caccgtcaac aacactagat taataaacat ctacgcaccc tctggtacaa      1860
     gcaacaggag gggaagagct gtatttttta aggaggatat ggttccccta ttctgcggcc      1920
     gatatgatca gataattttt ggcggtgact ataattgtgt cctgtcggct aaagaccaga      1980
     ccccaaattt taactactgt gccgaacttg acgctattat taaacaatta atcttaactg      2040
     acacttgaga gcacaaaaac ggtgcattac cagggttcac atacattaca aatcactctg      2100
     ccagccgtat tgacaggatt tacgtgtcag ccaacctgaa acagcatgtt ctgcacacag      2160
     agttgtggcc caccatcttt tcggaccaca tagcgtacat atgtaccgtt aacttaacaa      2220
     ggcaacaaac atacagggga cgaggattgt ggaaacttaa tacagaacat ctgaaggatc      2280
     ctgaatgtca tgaagtattc caaaatgtat ggaaagaatg cgagaagcga tttccatcct      2340
     atccctcggc actcacatgg tggttgaaat gcgccaaacc gacgataaga agagcgctaa      2400
     taaattactc gcgggaaaag atggcctggc agaagcagac gaccgaattc tactttaaag      2460
     tcctccgaga tttgtacaga tccgatacac ctgtaattaa caaacacctg gagataaaaa      2520
     gaattcaagc taagctcata gctttacgac ggaaacaact tgacggttgc aaaatacgat      2580
     caagactcca aaatgatata cgtggagaaa tacatcaata taccatgtta taaatgaaag      2640
     aaagggacag cgaaggaaaa taataactga aataataacc gcggatggcc gagtattgac      2700
     gcagcaaagt gacatcaaga ccgaaattca aaactacttc gccgagctct taaacaatgc      2760
     aacaacggat gtaacagcgc acaatgaact tacaacagga ctcacccgga agctcgacca      2820
     agaagaagca gccactttgt taacagaaat aacagaggaa gaggttgagg acgcaatcat      2880
     aagaagcccg aaaaataaat ctcctggacc cgacgggatt ccggctgaac tctatcacac      2940
     ttttaggaga cagatgatac ctaaactaat atgtatttgt caagaactga tgaatccaaa      3000
     cactaatata ccgagtgact tccgagaagg aacaatagtt ctcatcccga aaactcctgc      3060
     agggaaatca gtatcaaatt tcagacctct cactttacta aattgcgatt ataaaatatt      3120
     ttcacgcatc atcaatgaga ggttaaaatc agtcctgaac actgtcactg gggcttatca      3180
     atcgagcgtt ggaaaagagm gatccatcca ccacacagtg accgactata gagacattat      3240
     ttcaattgct gaagtctgta aaattaaatg cgcsatggtc tccttagatt tcgagaaagc      3300
     atttgataga gttagccatg attacctctt ccacgttatg tgcgccatga attttccgca      3360
     gcgttatatc gcwattgtaa agaactactt aaaccactct acatcgagaa tcatggttaa      3420
     cggccaaccc agcagaccaa ttataataaa cagttcagtg agacaagggt gtcctctctc      3480
     tatgtcmttg tttgcgatag ccattgaacc gttactttta agcttaagcc aaaatctkca      3540
     aggcatagta acgaatggcc agaaagttgt cattagggca tatgctgatg acgtcatgtt      3600
     tctggtmaga gataacaatg agatcataaa ggcactagag ataatacaaa aatacgaact      3660
     cgcatccggc gcaaagctga acagaaaaaa gtctgcagta atgaacatcg gaccggacag      3720
     gagctcccat ccaaggacaa ttaaggagcg ggcaaaaatg ccttggatag aatacacgcg      3780
     aacattcgca cacaattgca ataaattaca ggaggatact gaacaccatt cggccagata      3840
     caacaacaaa tctcaggaaa ctagatgaac tgcagaggtg gcattgataa atatttattt      3900
     aacatctaaa ataaattacg tagcacaggt ctccacggtc gcaattggct gctctttgtc      3960
     aacccgtcca tatatttaaa taaaattgaa acatgacgtt accaaccgac aaggtggcct      4020
     aaatcttata aactatatac aggcacagcc tgaccagcaa actacaagca gtggacgaca      4080
     ttggaatagc gtagtaaaat ttttactgaa tgaaatagcg ccgcccaacc acgacgctca      4140
     tcgatgtcac caattcccaa cgaacttttc casctgaaac atttcttgat agaatatagt      4200
     tatatccgaa tgtgtctacc agaaaaagat ttgatcagag tgaaagaagt ctacaaaact      4260
     ttcatgaaaa accacagcga gaacatcatt gaacaaaagt atcgtcactt taattggcaa      4320
     aacatatgga gaaacatcca tcatccgcag ttgccaactc acgtgaaggc acagtggtac      4380
     tatgccgtta atagaaaaat cccgacgaac tcaaaactcc acgcgatcca tctggcagat      4440
     tccgctttgt gtactgcctg taaaataaac gatactgatg aacaccaatt tgtctgcggc      4500
     aatgctaaca atatatggca gtcagtaaga agaattttag caattatcca acgaacatcg      4560
     ccgcacacaa taactccaac aaacctctta cacccggatg aagcactata ccctaacacg      4620
     aagaacaacg ccgtgaactg gttgaagggg cacacggtgt tttacatatt atcaaacaag      4680
     gagaagagcg aaggtgactt ttggacctat atcgcgaccc aacatcaaac attactccag      4740
     atgaacaatt accataaaca ttacgcaaat ttcctcaaaa ggaccatcat gtgaacccct      4800
     ctattcacat tgatatcttg aaagtgtgac tgaaattgat ttgaaaataa ataaatcaca      4860
     attatttaat gaacaaataa gatcatgatc aaacaacgaa caagtactca aaattttatt      4920
     ttctattaaa aaaaatattt tggaaaaagt cttagttttg taaaagagac atttcatttg      4980
     tatccccttc tagactgatc tcgcgacaac taacgcgttc agagttagag aagatgaaat      5040
     aagaatagta attaaaaaaa cagaaaaata atgaaaacga acataggaac ggacaaaaca      5100
     gtgcatggaa acactccatt gtaactctcg cgaagacgaa ctctgaaatc gtcggtgagc      5160
     agagattgaa aagaaggatt ttttttttat ttctttattt cgtttggaaa aatatatatt      5220
     tatgtttcca accgaagaag gtactgttac gtttcatgtg ttacattttt aaatggaaaa      5280
     aaaaaaggag acgacgcaat taagctgtgg aatacagcac tcataagaaa aactttcagt      5340
     tttgaatcca accaagaagg gattatttgt ttttatcaaa cttttgttat gggtgaccaa      5400
     cgtcaagtaa gaaaagaatt aatgccatta caagaaagaa gaaaaa                     5446
//
ID   Tx1-1_AAe   repbase;    DNA;    INV; 4984 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4984
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1457-1457 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >95%
CC   identity. It is positioned at the deepest branch of the Tx1
CC   clade, and does not show sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           121..1185
FT                 /product="Tx1-1_AAe_1p"
FT                 /translation="MEGLVKNTLMFRFPDGAAGPSVVEMARFAKAFDADRF
FT                 TMESVYKISEERCICIKFMNERTMKDALMQNHEEHVFEYSNGDKVQIKMSV
FT                 AGGCSKYIRIFDLPPEVPDQEISTVLSRYGVVRRMVREKFPAQLELDLTTG
FT                 VRGVYIEIKKEIPATLFFLNRRGRIYYEGVKHKCFLCKEEGHLKADCPRNA
FT                 ANQRKSQTADTSGETVGASAKVAPTTSGRSSYAETLKNKVSVAEVSGSTMT
FT                 VLVPAAKVTHGNVKEGSSSVVGVIGDDSRPPAAEIVGNDGDSQESESDSAA
FT                 VLDAEMDESGHAVKRQHDSSSTEDEGFNRVTRSRKQKKDEDALEIIAATSA
FT                 QLKNTGKSKLKN"
FT   CDS           1597..4851
FT                 /product="Tx1-1_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNFIRKVVSININAIKVNVKKSLLKEFILDNDIDVVF
FT                 LQEVAFDDFSFLPSHEAFVNRNEASSGTAILVRKSIDTRDCLKCPSGRIIS
FT                 IVIDNVNFVNIYGHAGSQQRAERDELFEISAVDHMSKTAANSTVIGGDFNC
FT                 ILEEDDTRGNFKNICRGLKTLTNLFDLKDVELKLKCQKKQFTFFRNDSASR
FT                 IDRFYSTKCFLNEIIKFETKAVPFSDHHAIQFCYKFDPNHRIPVYGRGYWK
FT                 IKGFLLQDDDLTAEFAKTYESLRSRAKYLNNFAEWWCFDVKNKIKQFYNSK
FT                 FFEYKQRDRAKKEVWYTKLKELEERQLNNENVSNEMFEVKSRIVSAENQRL
FT                 QLLCSGFQPNTMLEAEKMGIYQVSKYVKMHSNHNHVQLKNGDGLLTDQIQT
FT                 KEIIYDHYKNLFDEINTNQSALPMLNSIRKVLSNDSKQALTSPITENELLD
FT                 TIKNSAMKKSPGPDGITYEFYLVRYSILKEDLLKLFNGIYSGAISPIENFS
FT                 SGIVTLIPKTGNKFDLNNYRPISLLNSDYKLLCKIIANRLKIYVEELIEEG
FT                 QTAGVKNKSCTNNLDVIRTLTVKAQQSKKFKFALLSIDLEKAFDTVCHKRL
FT                 WETLEKFQLPDQLITCIRQLYGKASSRILVNGFLTPSFKIRRSVRQGCPLS
FT                 MILFCLYIEALIRHLYVNVSGILISGRFVKVLGFADDLTLIIRSDNEFDTV
FT                 MQIIGNFSIFAGIKLNVKKSGFLRYNNCKLGPQLIEEKKELKILGLLISTN
FT                 YKVMVENNFKKIIQNINVTTQAHASRRLSLLEKVIVLNSYILSKLWYASQT
FT                 LPPSNVHIAQIRKTMGYFLWGYHRIFKIERTQLYLHNLKGGLNLLDPDSQC
FT                 KSLFIRNILFGDSGTTEHYLISTSNLKGLTLNTVRYISKAKEIKEIPYIVT
FT                 NKQIYNYLIDKLSIRVKVEEKYPQIMWSTIWENINHNFLTLSTRSTLYEVF
FT                 NDIVPNKIKMYNYLANVDNFGCDVCGKPDSNMHRIKDCPKTLEIWQWISKI
FT                 VKNRXKIQIESPHMLLYKGIGKRNSKYKAALWLVCEAIVYNTNNHRNPSLF
FT                 QFQKGIRDVRWNNRKLFSKHFDKYLNIC"
XX
SQ   Sequence 4984 BP; 1688 A; 788 C; 1057 G; 1449 T; 2 other;
     cagttgacga tcagctctcg ttcggtattg acgtgctttg ttagatcgaa aacaataatt        60
     caaaagctgg ctcacagcta aagtgctttg tgtgaaataa agtggaacag tgcgagaaaa       120
     atggaaggct tggtgaagaa cacgctcatg ttcaggtttc cggatggtgc tgcagggcca       180
     agtgtagtgg agatggcaag atttgctaag gctttcgatg cggacaggtt cactatggaa       240
     agtgtctaca agatctcgga agaacgatgc atatgcatca agttcatgaa tgagcgaacg       300
     atgaaggatg ctttgatgca gaatcacgaa gaacacgtgt tcgagtattc gaatggggac       360
     aaagtgcaaa tcaagatgtc tgtcgctggt ggatgcagta agtacatccg gattttcgat       420
     ttgccaccgg aggtgcccga tcaggaaatt tctaccgttc tctcgagata tggagttgta       480
     cgccggatgg tccgggagaa atttcccgcg caactggagt tggacctgac aacaggagtt       540
     cgtggagtct acatcgaaat caaaaaggag atcccagcta ctctgttctt tctcaatcgt       600
     cgaggaagaa tttattacga aggagtcaag cacaagtgtt tcctgtgcaa agaggaagga       660
     catcttaagg cggattgccc gcgaaatgcg gcaaaccaga gaaagagcca aactgccgat       720
     acmagtggcg aaacggtggg tgcctcggct aaagttgctc ctactacttc cgggcgttcg       780
     agttatgctg aaacgttgaa gaacaaagtg tcagtcgctg aagtgagtgg aagtacgatg       840
     acggtgctag taccggctgc aaaagtaaca catggcaacg ttaaggaggg cagttcttcg       900
     gttgtcggtg tgattggaga tgactcgcga ccacctgctg ccgaaatcgt tggtaacgat       960
     ggagatagtc aggagtctga atcggattct gcggctgtcc tggatgcaga aatggatgaa      1020
     tccggccacg cggtgaagag acaacacgac agttcctcga cggaggatga gggctttaat      1080
     cgggttacga gaagccgaaa acaaaagaaa gatgaggatg ctctggagat cattgcagcg      1140
     acgtctgctc agttgaaaaa cactggtaaa agcaagttga aaaactaagg tcagttgaag      1200
     gttaaagccc tgtttattca tgacgacaat ggctatgttt taaggttatt gttttggaaa      1260
     cgatatggta cagcgtcagg atcgatttgg ccatagttga tgacaatagc aatgtttcga      1320
     ggttattgat ttggaaagtg atttatagta tatgcaagtt cttgatctta ttatgatagt      1380
     ggctatgatt tgaggttatg agattggact attctatttt tggttatact acttgaacat      1440
     ttatgatgaa atatgctacg tctttaaggt ttgatttggg tatgtgaatt aactctaact      1500
     ggcacacttg aacattggcg atgacaacag ctacgaataa cggttatgat tacggttttt      1560
     ctgcgtcttt ttcggtagtg cagttgtatg tgagagatga actttatccg gaaagttgta      1620
     tccattaaca ttaacgcaat caaagtgaac gttaaaaagt ctttgttaaa agaattcatc      1680
     ctggacaatg atatagatgt ggtgtttcta caggaagtag cgtttgatga tttttcattc      1740
     ctgccatctc acgaagcctt tgttaacaga aatgaagcta gttctggtac agctatactg      1800
     gtgcgtaagt cgattgatac acgtgattgt ttgaagtgcc cttctggaag aataatatcg      1860
     attgtgatag ataatgttaa ctttgtaaac atctacggtc atgctggatc gcaacagaga      1920
     gcagaacgtg atgaactgtt tgaaatttca gctgttgatc acatgagcaa aactgcagca      1980
     aactcaacgg tgataggggg tgattttaat tgcattttgg aagaagatga tacgcgtggt      2040
     aatttcaaaa atatctgtcg tggtttaaaa acattgacaa acctgtttga cttaaaagat      2100
     gttgaactca agcttaagtg tcagaagaaa cagttcacct tttttagaaa tgactccgct      2160
     tcaaggattg atcgctttta ttcgacgaaa tgttttttaa acgaaattat taaatttgaa      2220
     acaaaagccg taccgttctc cgaccatcat gcaatccagt tttgttataa gtttgatcca      2280
     aatcacagaa tccctgtgta cggtagagga tattggaaaa ttaaaggttt tttattgcaa      2340
     gatgatgatt taacagccga attcgcgaaa acttatgaaa gtttgcgctc tagggcgaaa      2400
     tacttaaata attttgcaga gtggtggtgc tttgatgtta aaaacaaaat taagcagttt      2460
     tacaattcaa agttttttga gtacaagcaa cgcgaccgtg ctaaaaaaga ggtttggtac      2520
     acaaaattga aagagctaga ggaaagacaa ctgaataacg aaaatgtaag taacgagatg      2580
     ttcgaagtta aatcgcgtat tgtaagtgca gaaaatcagc ggcttcaatt actttgttcg      2640
     ggatttcaac ctaatacgat gctagaagca gaaaaaatgg gtatctatca agtttcaaag      2700
     tatgtgaaaa tgcacagtaa tcacaatcat gtgcaattaa aaaatggtga tggtctttta      2760
     accgatcaga tccagacaaa ggaaattatt tacgatcatt acaagaatct gtttgacgaa      2820
     atcaatacca accagagtgc tcttccgatg ttaaattcta ttaggaaagt actaagtaac      2880
     gactctaaac aagctttaac ttcgcccata actgaaaatg aactacttga cacgatcaaa      2940
     aacagtgcaa tgaaaaaatc tcctgggcca gacggcataa cgtatgaatt ttacttggta      3000
     cgttactcta tattaaaaga agatttgctc aaacttttca atggaattta ttctggcgcc      3060
     atcagtccga ttgaaaactt ttccagtgga atagtaacac taataccgaa aactggaaat      3120
     aagttcgacc tgaataatta tagaccaatc agtctattga attccgatta taaacttttg      3180
     tgcaaaatca ttgctaaccg tctcaaaatt tatgtagaag aattgattga agaaggtcaa      3240
     acagcgggtg ttaaaaataa aagttgcacg aataatcttg acgtgatccg cacacttact      3300
     gtaaaagcgc agcagtccaa aaagtttaaa ttcgcgttac taagtattga tctcgaaaaa      3360
     gcttttgaca cggtttgtca taaacgatta tgggagacct tggaaaagtt tcagctacca      3420
     gaccaattga ttacctgcat aaggcagtta tacgggaaag cgtcttctag aattctcgtt      3480
     aatggatttt taaccccatc atttaaaatc aggcgatcag tgagacaagg atgtccacta      3540
     tctatgatac ttttttgctt atacattgaa gcactgataa gacatttgta tgtaaatgtt      3600
     tcaggaattc tgatttctgg acgttttgtt aaagtcctgg gatttgctga cgatcttact      3660
     cttataataa gatctgacaa tgaatttgat acggttatgc agataatagg aaatttttca      3720
     atatttgcag gcattaagct taatgttaaa aaatctggat tcttaaggta taataattgc      3780
     aagctaggac ctcagcttat tgaagaaaaa aaggaattaa aaattcttgg tttattaata      3840
     agcaccaatt acaaagtaat ggtagaaaac aatttcaaaa aaattataca gaatataaat      3900
     gtaaccactc aagcacatgc gtcaagacgt ttaagtttat tagaaaaagt aatagttttg      3960
     aattcttaca ttctttccaa gttgtggtat gcttcacaaa ctttacctcc aagtaatgtg      4020
     cacattgcac aaattaggaa aaccatggga tattttctgt ggggctacca cagaattttc      4080
     aaaattgaac gaacacagtt gtatttgcat aacctcaaag gaggtttaaa tttacttgat      4140
     ccagattcac agtgtaaatc actgttcatt aggaacatac tattcggaga cagtggaaca      4200
     actgagcact atttgatttc aaccagtaat ctaaaagggt taactctcaa tactgttaga      4260
     tatatatcaa aagctaaaga gataaaagaa attccttaca tagtaacaaa taaacaaata      4320
     tacaattact taattgacaa attgagtatt agggtaaaag tggaagaaaa gtatccacaa      4380
     attatgtgga gcactatttg ggaaaatata aatcataact ttctaacttt gtctacaaga      4440
     tctacacttt acgaggtatt taatgatata gttccaaaca aaattaaaat gtataattat      4500
     ttagcaaacg tagataattt tggatgcgat gtttgtggta aaccggatag taacatgcac      4560
     agaatcaaag actgtccaaa aacgctagaa atatggcaat ggatttcgaa aatagtgaaa      4620
     aatagattwa aaatacaaat tgaatcgcct catatgttgc tttacaaagg aataggaaaa      4680
     cggaatagca aatacaaggc agctttatgg ttagtttgtg aggctattgt gtataatact      4740
     aataatcaca gaaatccaag tttgtttcaa tttcaaaaag gaataagaga cgttagatgg      4800
     aataatagaa agttatttag taaacacttc gacaaatatc ttaacatctg ttgaaatcga      4860
     tacagaaatt tgtttaagat ttagcattaa gaatagcttt aaaacatctt tgtatataat      4920
     tcaatacttt gtaatgtttt ttatgaatgc ttgttaaaag gtaaataaac agttaaaaaa      4980
     gaaa                                                                   4984
//
ID   Tx1-1_CQ    repbase;    DNA;    INV; 4960 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4960
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 633-633 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..1384
FT                 /product="Tx1-1_CQ_1p"
FT                 /translation="METRKNTLKILFATGAKVPSYLEVLKFMSTGVKIPAT
FT                 DVHSVYKDENDQKFYIKFMDENSYNRFCNSVEDQYWFRFDDGSRSPVQLEL
FT                 ASRQFKYIRLFNLPPETEEKEIAMALSKFGKIRQHVREKYPQDLGYHVFSG
FT                 IRGVYMEVEKEIPANMYIAHFRARVYYDGLKNRCFFCKAEGHMKVECPKLA
FT                 SLRVNAETGGQRSYSSVTANLAIANSSTIEPDNTLTMTTLPLTSPPARPKM
FT                 PMQPQEGDGASSAKISTPANNPFVTLTPAEVPMETPVPRPEETTNNQASAA
FT                 TTTERPEETTNNQASAATTTETPNKPVDATATVATPKETSAAEAERSGHDG
FT                 MIIDGEQLMVDEAIKGTAEGEGKLELKKRPIETSLSLGSNDSDLGQGKGSN
FT                 SKKKRGAQGQGKGKGKGRGK"
FT   CDS           1556..4798
FT                 /product="Tx1-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPFIRKFATVNLNAISSKLKLSLFKDFVWNNDLDFVF
FT                 VQEVAVENFNFLSSHTALVNISVDGKGTGILVRKNIDYSNVIMNSNGRITS
FT                 AEIDGINFINIYAHSGSKFKKERDKLFTEDILIHLSETKENVLLGDFNCII
FT                 DKNDSNSSIKNVSNGLKNMTSSLTLIDIELNHNKNRIFTFVRGNSKSRLDR
FT                 IYASKEFAENVRSVETIAVAFSDHHSVVLKLEIGHQFMNFYGRGYWKINSF
FT                 LLNDPDIIDKFKKKYTELKLRNSYSNLNFWWNTVFKSNAKSFFKKENFLSN
FT                 QQSAREKSFYYNCLNEIVQKQEQNIDCSNELSVVKSKLMELEQRRLSKIKF
FT                 KLKAETLHADEKLSLFQVTSFINRSSTSNLIKLRINDEITSDIKKLKNEIY
FT                 HHYSQKFQNQHVNNTDAETVLGYLNKKLEINDKIHLNRPIEIYEIENALKN
FT                 ASSRSSPGPDGLSYEFYSIFFDVVKDDLLNLFNDYLVNEEYPPALFTAGVI
FT                 TLIPKVGDKYDLQNKRPISMLNTDYKLFTKILWNRIQPMMKNVLGAEQAAC
FT                 VEDNSCITNLRLLRNILVKANKSKKFKGAILSLDLEKAFDRVDHDFLWKVL
FT                 KKIDFPDEFINCLKKLYKNATSTVLFNGFLTEPFQILSSVRQGCPLSMALF
FT                 AFYIEPLIRMIDQNINGVLIDNRFLKVVAYADDINIFVKNDSEFDIILQLV
FT                 HYYSLYSKIKLNLFKSQFLRFNSCMIGPQQIKEVDDLKILGVHFSQSFDKT
FT                 IDQNYNGIIKFINISLLQQYSRRLNLFQKVYVLNTYILSKLWYVAQVFPPD
FT                 NKHLASLRSICGKFLWKGHFYKVERNELYLPVLKGGIALLDVECKTKSLFI
FT                 KNILFGKSDELDTFMINQLVNKNLTRNTREWLQEAEVLKNENHLNTSKKLY
FT                 DYFIESKKIEIKKQKENPHLQWNTLFENTNKNFLSTTAKSYLFMASRDIIP
FT                 CNSKLFRHGVKGTESPFCELCGAQDTVEHRFKDCVHSKIIWTWLNNIVINK
FT                 LKLKVKDAEEVLWCDFNDQNVKLKAALWLTVESLAYCLQTFGEGTLDELKS
FT                 RLCESRWNSREIFKKHFKHFLNVF"
XX
SQ   Sequence 4960 BP; 1724 A; 803 C; 1024 G; 1409 T; 0 other;
     cagttcgctc ttggacttcg gagagtaaag tcacgtttct cgaagagtgc gcgtacaagc        60
     agattattgg tggtgcacac agggtgtgtt acccatctat ctctttctaa caaagcggaa       120
     ttaaaccaac ggaaagatca aaatggagac tcgaaagaac acgctgaaga tcctgtttgc       180
     gaccggtgcc aaggtgccgt cctacctcga ggtcttgaaa ttcatgtcga ccggtgtaaa       240
     gataccagcc actgacgtac attcggtgta caaagatgaa aacgaccaga aattctacat       300
     caagtttatg gacgagaaca gctacaacag gttctgcaac tcggtagagg atcagtattg       360
     gttccggttc gatgacgggt caaggtctcc ggtgcaactg gagttggcca gcaggcagtt       420
     caaatacatc cggcttttca acctgccacc ggagacggag gaaaaggaaa tcgctatggc       480
     gctgagtaag ttcgggaaga ttcggcaaca cgtacgggag aagtatcctc aagacctggg       540
     ctaccacgtg ttcagcggca tccgtggcgt ttacatggag gtcgagaaag aaataccagc       600
     caacatgtac atcgcccatt tccgagcaag ggtgtattat gacggattga aaaatcgttg       660
     cttcttctgc aaagctgaag ggcacatgaa ggtcgaatgc cctaagctgg ccagtctcag       720
     ggtcaacgct gaaactggtg gtcagcgttc gtacagtagc gtaacagcaa atttggcgat       780
     cgcaaacagc agtacgatcg agccagacaa cacgctcacc atgacaacgc ttccgcttac       840
     atcaccacca gcacgaccca agatgccaat gcagccgcaa gagggagatg gcgcaagctc       900
     agcgaagatc agtacaccag caaacaatcc atttgtaaca ctaacaccag cggaagttcc       960
     gatggagacg ccagtaccac gaccagagga gacgacgaac aaccaggcgt cggcggcgac      1020
     gacgacggag agaccagagg agacgacgaa caaccaggcg tcggcggcga cgacgacgga      1080
     gacgccgaat aagccggtgg atgcgacggc gacggtagcg acgccgaagg agacatcggc      1140
     tgctgaagca gaacgatcgg gacacgatgg gatgattatc gacggcgagc agttgatggt      1200
     ggacgaagcc atcaagggga cagcggaagg ggagggaaaa ctggagttga aaaagcgacc      1260
     gatagaaacg agtttgtcgc tcggcagcaa tgattcggat ctagggcaag gtaagggaag      1320
     caatagtaag aaaaaacgtg gcgctcaggg ccaaggtaag ggcaagggga agggaagggg      1380
     gaagtgagga gggctaaatg ttgaatatct tttcacactc gacttatttc ttcctttgat      1440
     ggacatctat gagtccagcc atgaatacgt tcaagaagtg ttctttgcgt ttgattacgt      1500
     ttgacatgat agtcttgata ttcatgcact ctactaagat taatccatcc ttctaatgcc      1560
     ttttattcga aaatttgcaa ccgttaacct gaacgctatt agcagtaaat taaaattgtc      1620
     tttgtttaaa gatttcgttt ggaataacga cctcgatttt gtatttgttc aagaagttgc      1680
     tgttgaaaat tttaattttt tatcttccca cactgcactt gttaacataa gtgtagatgg      1740
     taaaggaact ggaattttag ttcgaaaaaa tattgactat tcaaacgtca ttatgaatag      1800
     caatggcagg ataacatctg cagaaattga tggaataaat tttattaata tctatgcaca      1860
     ctcgggatcc aaatttaaga aagaaagaga taagctgttc acagaagata ttttaattca      1920
     tttatcagaa actaaagaaa atgtattgct gggagatttc aattgcataa ttgacaaaaa      1980
     cgattcaaac agttccataa aaaatgtgag taacggactt aaaaatatga cttcatcgtt      2040
     aactttgatt gacattgaat taaatcacaa taaaaataga atatttactt ttgttcgagg      2100
     aaactcaaaa tctaggttag atcgcatcta tgcttcaaaa gaatttgcag aaaatgtaag      2160
     atctgtagaa actattgctg ttgctttttc ggatcaccac agcgtagttt tgaaacttga      2220
     aattggtcat caatttatga atttttatgg acgtggatac tggaaaatta attctttttt      2280
     actaaatgac ccagatataa tagacaaatt taaaaaaaag tatactgaat tgaaactgag      2340
     aaactcttat tcaaatttaa atttttggtg gaataccgtt tttaaaagta atgcaaaatc      2400
     tttttttaaa aaagaaaatt ttctttcaaa tcagcagtcg gcacgagaga aaagtttcta      2460
     ctataattgt ttgaatgaaa tagtacagaa gcaagaacaa aatatcgatt gttcaaatga      2520
     attatcggta gtgaaatcca aattaatgga actcgaacaa cggcgtttga gtaaaattaa      2580
     attcaaatta aaagcggaaa cattacatgc cgatgaaaaa ctatcactgt ttcaagttac      2640
     atcttttatt aaccgttctt caacatccaa tctgattaaa cttagaatta atgatgagat      2700
     aacatctgat attaaaaaat taaagaatga aatttatcac cattactctc aaaagtttca      2760
     aaatcagcac gttaacaaca ctgatgcaga aacggtttta ggatatttaa ataaaaaact      2820
     tgaaatcaat gacaaaatcc atctaaacag accaatagaa atttatgaaa ttgaaaatgc      2880
     tttaaaaaat gcttctagca gaagttcacc aggaccagat ggcctaagtt acgaatttta      2940
     ttccattttc ttcgatgttg tgaaagatga ccttttaaat ttatttaacg attatttagt      3000
     taatgaggaa tatccacctg cgttgtttac agcgggggtg ataactctca tccctaaagt      3060
     aggagataaa tatgatttac aaaacaaacg tcctattagt atgctgaaca ctgattacaa      3120
     attgttcact aaaatattgt ggaaccggat acaacccatg atgaaaaacg ttttgggtgc      3180
     ggaacaagca gcttgtgtag aagataattc ctgcattaca aatttacgtt tattgagaaa      3240
     tattttagta aaagcgaata agtcaaaaaa gtttaaagga gcaattttaa gtcttgatct      3300
     tgaaaaagcg tttgatcgcg tagatcatga tttcctttgg aaggtgttga agaaaattga      3360
     ttttcctgat gaattcatta attgtctaaa aaaactctac aaaaatgcaa cctcaaccgt      3420
     tttgttcaat ggttttttga cggagccgtt ccaaatttta agctcagtga ggcaagggtg      3480
     tcctcttagt atggcgcttt ttgcttttta tatagaaccg cttattagaa tgattgatca      3540
     gaatattaat ggtgtgttaa ttgataacag atttcttaaa gtagtagcat atgcagatga      3600
     catcaacatt tttgttaaaa atgatagcga gtttgatatt atactgcaac ttgttcatta      3660
     ttacagtttg tattcaaaga ttaaacttaa cttgttcaaa tcacagtttt taagattcaa      3720
     cagttgcatg attggccctc aacaaattaa agaagtagat gatttaaaaa ttttaggagt      3780
     acatttttca caaagttttg ataaaacgat cgatcaaaat tataacggaa ttataaaatt      3840
     tattaatatc agcttattac aacaatattc tagaagattg aatttattcc agaaagttta      3900
     tgtgctaaac acatacattt tatccaaact atggtatgta gcgcaagtat ttcctcctga      3960
     taataaacat ttggcttctt tgcggtccat atgtgggaag tttttatgga aaggacattt      4020
     ttacaaagtt gaaagaaatg aattatattt accggttttg aaaggaggca ttgctctttt      4080
     agacgtagaa tgtaaaacaa aatcactttt tattaaaaac atattatttg gtaagtcaga      4140
     tgaacttgat acgttcatga taaaccaatt agttaacaaa aatttaacgc gaaatacaag      4200
     agagtggctt caagaagcgg aggttctgaa aaatgaaaat catttgaaca ctagtaagaa      4260
     attatatgat tattttattg aaagtaagaa gattgaaatt aaaaagcaaa aagaaaatcc      4320
     ccacttgcag tggaatacac tttttgaaaa taccaacaag aacttcttgt caactacagc      4380
     gaaatcttat ttatttatgg cctcacgaga tataattcca tgcaactcaa aattatttcg      4440
     tcatggagta aagggtacag aatcaccttt ttgcgaattg tgtggtgccc aggatactgt      4500
     agaacacagg tttaaagact gtgtacattc aaaaataatt tggacttggt taaataatat      4560
     agtaattaac aaattaaaat tgaaagttaa agatgcagaa gaggttttgt ggtgtgattt      4620
     caatgatcaa aatgtaaaat tgaaagcagc gttgtggtta actgttgaaa gtttagcgta      4680
     ttgtttgcag acgtttggcg aaggaacgtt ggatgagttg aaaagtagat tgtgtgaatc      4740
     gcggtggaat agtagagaaa ttttcaaaaa gcacttcaaa cattttttga atgtattcta      4800
     ggtagtagtg taaaataaca agttgttgag tgtggggaga tatttttgag tctgtttgag      4860
     ccacagtagg ataatagaga atagatagtc atgttattgt aaaatgtatt ttcattgctg      4920
     ccaataaaaa gttacttcat aaaaaaaaaa aaaaaaaaaa                            4960
//
ID   Tx1-1_FoCa  repbase;    DNA;    INV; 5524 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5524
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2712-2712 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. No clear target preference.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1594
FT                 /product="Tx1-1_FoCa_1p"
FT                 /note="RNA recognition motif (RRM)."
FT                 /translation="MGILSDEDETFMDPEEPADDDVSIPDTSLGKSFAKAV
FT                 GSHGVDFLANSAHGVVLRRIKEVPLVEVLKAFSKYVSPQFITHADNLGAAN
FT                 WAVWLKDSESFDKVMRADSLSFGAASVKLYAYANPIRRVIVRGVPPFVNDA
FT                 DLSACFSKFGELRGHISHQGLMNAGEEFAHIKSFTRIIELAIPKGVRVPDV
FT                 VTVKANGKEYKLRVQIGAKKCFKCARKGHISANCTFKKQPEKIENPLPSNK
FT                 VDSVPNDQVDSLQGDVDPPVLRKITDTNNDNEVRDSIPPFKRRKTLDFQDV
FT                 SAEEVYESDNSQRSSSKSRRNRGRPKSRTNSDPKPQTMSEWGFDLWNVNLQ
FT                 IKSVTKERFILFLRSLRRENNNIKCKYVNLGQQIFMTTKTPEDIKSLLVEV
FT                 HSSIPSSNTSLVTKYAFLLNQVKSFLELEQDNFPKIQAQLDDNYRSMEWQS
FT                 FCRLNKIPVADQDSYKTHFFNIKW"
FT   CDS           1591..5130
FT                 /product="Tx1-1_FoCa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVISIWTLNCQGLNNSVKKQSLKSLIKSFNPTVVSLQ
FT                 ETNLNPIRHGIFNIQNYTPFFNDCTTLGSGTSFYIHHKCSVISHDVIVPGK
FT                 MSKIHIKFLSQLFLVVNVHFPFLKTESDEFLVKIKSEITAAPNCDGIFVLG
FT                 DWNFVVDTERDRIGNRESRNGLAKKFKNLITSNNFVDSYRHLCPQGKDVTF
FT                 VSRMNGTSARLDRIYLQVSQLPNLVSQTIIPFIGDHMVFGVTMTTNKNNNK
FT                 CLWSCPNTILNNSGFIFTVELILRDFLLSDFSLEKYERLKSKIIRVAMETD
FT                 LYCKMNIKRLVRLTYNKLIHTQNVPSSEIFTNFIDSIEGAIRGDGVCSDFP
FT                 DRKVVTTRVGITVDEALDGLSSGEKLKMVGSFFAEKFAPSTVNLSNLDNFM
FT                 SDMPKIPNPGIYESDLSCNEILQAIQKSPNNKAPGLDGLTFEFYKKFSGQF
FT                 SKILSNLATFSCAEGFLPKSCKSSVATLIYKAGDPKNLKNYRTISLTNTDY
FT                 KIISSCVKSRLNIALPSIIGPWQTCGVRGRSIFDNLTFIRDAFQSGELEGF
FT                 LFSLDQEAAYDRVNLEYLYRVLKNFGYPDNFIKYVKLLHTDFTLVVSVGSD
FT                 LTAPISVGVGLKQGDPSASPLYCIAIEPLLFNLHKKLRLSGPSAWRRHPNK
FT                 YISAYADDTNVLLGHQSQIGIVESEYEKYSQFSSSKLNDQKSVILILGAQA
FT                 PPTNRFPVVSDGLKILGIFFGNNNYMAQNFTILMDKFDSKLEFYTKKCAPV
FT                 SHFSRSKIVNTFLSPIFWYIFKVLDPPMGILDAISKKIENYVWWGSKRWVS
FT                 RPYVYLPLLNGGLGVRNPTAQIATFRLTLVNKVLSSCEDNYFLAESFNQVQ
FT                 LLINSEIVKLSTFYKELYNVTQRLGVGLTACSRDYLHNIMISSQFLFRNLS
FT                 NNYLSRCTIVKVGDLYGPNKLKCIEALPAAVKRHAFSERKKYIDAVAMVTD
FT                 STDVRLDIPSLFSKSERVAVSKATNYLHCLRVHNIIRWEELDDVLSSHPQW
FT                 LRLVTTAVSNPEKDNVFKFWHNVGLTPSMAHSLKIYTNFSCPFCNILKPKV
FT                 EHYLKCPHTLDLRKIVAKFLTKVNIDTRAFDDAFLHGVSHAGGNIIIFYAY
FT                 NIIYKAFVHNLNNYSGKFNLISSFRHLLYGRILTDFYACSINSSLFPKFHK
FT                 NWDKFDIYKISKNKININLGF"
XX
SQ   Sequence 5524 BP; 1727 A; 1039 C; 1087 G; 1671 T; 0 other;
     agaagcggga actcgaggct cccggtgtgt ttacttttgg ttaagaaagt tattattttc        60
     aaattgaaag tttcagcgac aaacgcatca tattagtgtt aattttatgg tgtagtggtc       120
     ataaaacctc tgttagtgat agtgtgcttt ttaaaaattc tcttctccct tcgggaggtg       180
     agttatcatg ggcattctct cagacgagga tgaaacattt atggatccag aagagccagc       240
     tgatgatgac gtcagcatcc ctgatacatc gctgggtaag tcttttgcca aagccgttgg       300
     gtcacatggc gttgatttct tggcgaatag cgcccatggc gtcgtattac gccgaataaa       360
     agaagtacct ctggtggaag ttttaaaagc attttccaaa tatgtcagcc ctcagtttat       420
     cacacacgct gataatctgg gggccgcaaa ttgggcggta tggttaaaag attcagagag       480
     ttttgataaa gtgatgcgtg ccgactcatt atcttttggg gcagcgagtg taaaacttta       540
     tgcgtatgcg aatccaattc gccgggttat cgttaggggg gttcccccgt tcgtaaatga       600
     tgcagactta agtgcatgct tttcaaaatt tggtgagttg agggggcaca tttctcatca       660
     gggtctcatg aatgctggtg aggaatttgc ccacataaaa tcatttactc gaattattga       720
     gttagcaatc ccgaaagggg taagggtccc ggacgttgtc acggtcaagg ccaatggaaa       780
     agagtacaaa ctgcgggtac aaataggcgc caaaaagtgc ttcaagtgtg cacgaaaagg       840
     ccatattagt gctaattgca cattcaaaaa gcaacccgaa aaaatagaga acccattacc       900
     tagcaataaa gttgattcgg tgcctaatga tcaagttgac tcgttgcagg gtgatgtgga       960
     tcccccagtt ttgcgtaaga ttaccgacac caataacgat aatgaggtca gggattcaat      1020
     accccccttt aaacgccgaa aaactcttga tttccaagat gtcagtgcgg aggaggtcta      1080
     tgaaagtgat aactctcaaa gatcctcctc caagtctcgt aggaatcggg ggagacccaa      1140
     atcccgaaca aattcagacc ccaaaccaca aacgatgagc gaatggggat ttgatctgtg      1200
     gaacgtaaat ttacagatta agtctgtcac taaagaaagg tttattcttt ttttgcgttc      1260
     tctccgcaga gagaataata atataaaatg caaatatgtc aatttgggcc aacaaatatt      1320
     tatgaccaca aaaacccccg aagatattaa atccctattg gtggaggttc acagctccat      1380
     cccaagtagc aatacctctc tggtaacaaa atatgctttc ctgttaaatc aggtaaagag      1440
     ttttctagaa ttagaacagg ataattttcc aaaaatccaa gcccaacttg acgataatta      1500
     tcggtcaatg gagtggcaaa gtttttgccg attaaataaa attccagtag ctgatcaaga      1560
     tagctacaaa acccactttt ttaatatcaa atggtaatta gcatttggac cttgaattgc      1620
     caaggactta ataattccgt taaaaaacag tcccttaaat ccttaattaa atctttcaat      1680
     cctacagtcg tttctctcca ggagacaaat ttaaacccca tccgccatgg tatatttaat      1740
     atacaaaatt acacaccgtt ctttaacgat tgtaccacgc tggggagtgg tacatctttt      1800
     tacattcacc ataaatgctc ggtaattagt catgatgtga ttgtaccggg taaaatgagc      1860
     aaaattcata ttaaatttct ttcccaattg tttcttgtag taaatgttca tttcccattc      1920
     cttaaaactg agtctgacga atttctagta aaaataaaga gtgagatcac tgctgccccc      1980
     aactgcgatg gtatcttcgt actcggagat tggaactttg tagtagatac agaaagagac      2040
     agaatcggta accgtgaaag tagaaatggt ttggctaaga aatttaaaaa tttgataacg      2100
     tctaataact ttgtagatag ttatcgtcat ttgtgccccc aaggtaaaga tgttaccttt      2160
     gtgagcagaa tgaacggtac ttccgctaga ttagacagga tatatcttca ggtctcacaa      2220
     ttaccaaatt tagtcagtca aaccattata ccgttcatcg gtgaccacat ggtcttcggc      2280
     gtaactatga caaccaataa aaataataat aaatgcttgt ggtcatgtcc aaatacaatt      2340
     ttaaataatt cgggctttat ctttacggtc gaattgattt taagagattt cttgttatcc      2400
     gatttctcat tagaaaagta cgaaagacta aagagtaaaa taatacgggt tgccatggaa      2460
     accgacttgt attgcaaaat gaatattaag agactagtcc gtttaacata caacaaattg      2520
     attcacacac aaaatgtacc aagttccgaa atttttacga attttataga cagtatagaa      2580
     ggtgccatcc gtggtgatgg cgtatgcagt gatttccccg atagaaaagt ggtaaccaca      2640
     cgcgtgggta tcactgtaga tgaggcgctg gatggattgt catctggcga aaagctaaaa      2700
     atggtgggct cattttttgc ggaaaagttt gccccgtcta ctgtaaactt atcaaacctt      2760
     gataatttta tgtctgatat gccaaaaatc ccaaatcctg gaatttatga gagtgacttg      2820
     tcttgtaacg agattttaca agctattcaa aaatccccaa ataataaagc cccgggttta      2880
     gacggcttaa cgtttgaatt ttacaagaaa ttctcaggtc aattcagtaa aattttaagc      2940
     aatttagcta cattttcgtg tgccgagggg tttctgccaa aatcgtgcaa gagttccgtc      3000
     gccaccttaa tttataaggc tggtgacccc aaaaacctaa aaaattaccg cactatttct      3060
     ttgaccaata ctgattataa aatcatttca agctgtgtaa agtctcgttt aaatattgcc      3120
     ctcccctcca tcataggtcc gtggcagacg tgtggtgtta gagggaggtc aatatttgac      3180
     aatttgacat tcatccgcga tgcatttcag agtggtgaac ttgaaggctt tctttttagt      3240
     ctcgatcaag aggctgcata tgatcgtgta aatctggaat atctttaccg agtcttaaaa      3300
     aatttcggat atcctgataa ttttattaaa tatgtgaaat tactgcacac cgacttcacc      3360
     ttggtggtgt cggtgggcag tgatctcacg gcccccatat cagtcggagt cggtctcaag      3420
     cagggtgacc ccagtgcaag tccattatat tgcattgcaa tcgaaccatt attatttaac      3480
     ttgcataaaa agctacgact ctcgggcccc agcgcctggc gcagacatcc gaacaagtat      3540
     atttcggcgt acgcggatga cacaaatgtc cttctcggtc atcagagcca aatcggtata      3600
     gttgagtcgg agtatgaaaa gtattcacaa ttttcttcct ccaaattaaa tgatcaaaag      3660
     tctgtaattt tgattttggg tgcccaggcg ccccccacaa acagattccc tgtagtttca      3720
     gatgggctga aaattttggg aatttttttt gggaataata attatatggc acaaaatttt      3780
     actattttaa tggataaatt tgactcgaag ttagaatttt acacaaaaaa gtgcgccccg      3840
     gttagtcact tttcacgtag taaaattgtg aatacatttc tcagtccaat attttggtac      3900
     atttttaaag tactggaccc accgatggga attttggatg caatttccaa gaaaatcgaa      3960
     aattatgtat ggtgggggtc gaaacgatgg gtgtcgagac cctacgtata cctaccgctt      4020
     ttgaatgggg gtctgggcgt gcgtaaccca acagctcaga tcgctacctt ccgtctcact      4080
     ttggtaaata aagttttatc ctcatgtgag gacaattatt ttctcgctga gtcttttaac      4140
     caagtccaat tattaattaa ctccgagatt gttaaactat caacctttta taaagaattg      4200
     tataatgtta cccaacggct tggcgtggga cttaccgcgt gcagcaggga ttatttgcat      4260
     aatattatga taagtagcca atttttattt aggaatttga gtaataatta tttatctcgt      4320
     tgtacgatag taaaggtcgg agatctctac ggtccgaaca aattaaaatg tattgaggca      4380
     ttaccagcag cagtaaaaag gcatgcattt tcggagagga aaaagtatat tgatgcggtt      4440
     gccatggtaa ccgactcaac tgatgttagg ttagatatcc catcactatt tagtaagtca      4500
     gaaagggttg cggtttccaa ggcaaccaac tacctgcact gcttacgtgt acataatata      4560
     attagatggg aagagctgga cgatgtcctc tcctctcacc cacagtggct ccgcttagta      4620
     accactgcag tgtcaaaccc ggaaaaagac aatgtcttta aattctggca caacgtgggt      4680
     ttgacccctt ccatggcaca ctcactaaaa atttacacta atttttcatg tccgttttgc      4740
     aatattttaa aaccaaaagt ggaacattac ttaaaatgtc cacatacttt agatttgcga      4800
     aaaatagtag ccaaatttct tacaaaagta aacattgaca cgcgagcctt cgacgacgcc      4860
     ttcctgcatg gggtttcgca tgcggggggc aatattataa tcttttacgc ttataatatt      4920
     atttataaag cttttgtcca caatttaaat aattactcag gtaaatttaa tctcatttcc      4980
     tcgttccgtc accttcttta tggtcggatt ttgaccgatt tttatgcatg cagtataaat      5040
     tcgagcctct ttccgaaatt tcacaagaat tgggacaaat ttgatattta taaaatttcg      5100
     aaaaataaaa taaatataaa tttaggattt taatgcaatt aactttcctt ttctgcatga      5160
     ctaactgaaa tctagtctta tattagtctg taagataaat ccacctagtt tttatgatgt      5220
     gataagattt tactatattt gtgatacgtc gtttgataag aaaaccttgt actcatattg      5280
     attaatgata ttttatgaat tatgaaattg tccaaaatga ccaaaattgt aacattttaa      5340
     gaggcaagaa gataaaggag acaagcactg gcttagttcc tacccatgac ggccaaattt      5400
     tgtaaagcct tgtcgagaag acgtcgcctc aatattttaa aaaaaataaa tgatatgtaa      5460
     ttgatgattt aacttaatta attggaataa attcgtgcgt tatgttaaaa ttaaaaaaaa      5520
     aaaa                                                                   5524
//
ID   Tx1-1_LMi   repbase;    DNA;    INV; 5679 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.12, Created)
DT   13-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5679
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3481-3481 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           140..1198
FT                 /product="Tx1-1_LMi_1p"
FT                 /translation="MEPKRKDTLKISFDNTLPRPKSFDVEDFLMEKLQLTS
FT                 DDIIGIHLSISSSTVYLKLXNPTKCDQIVELYANKLKFKHPDGSIGDVQVT
FT                 HAGLGTRTIRIFELPFEITDEEINAVLRPYGTVLSNVAEKWSSAHKFQVLN
FT                 GVRQVRIEMTKHVPSYITVCGYRAIVIYEGQPRTCSGCGATGHVRAQCLQR
FT                 RVTQLPRGETVAQPAMTQLPLTYAAAARGITEPTTEAPLQDAISNTEEDAR
FT                 METVQVDEPVGDALPEHSAERGQSSSTEPARNRPRNEGLPPAHTTDSQPAD
FT                 NNLSSPTVQDMAENYSKDTKKRRIAHQGVDKTAPALREKAKQVRQKLQGVP
FT                 TAAKKTVCKQ"
FT   CDS           join(1755..3101,3068..4918)
FT                 /product="Tx1-1_LMi_2p"
FT                 /translation="MTANIPLQSYSIATVNINRIVSQTKVECLRDFIYAFD
FT                 IDIVLLQEVCTDRVEQIAGYSAILNRGTESGTATLLKNGIIPRNVRKLASG
FT                 RGISVETDTAQIINIYAPSGSNARQARIHFFQESIIELINPATENTILAGD
FT                 FNCVISANDQMPNPNICIQLGDLVDGLHLTDIWHNHPRANAGFTFITSHSK
FT                 SRIDRIYTSPSLTRSVLSVETCPVSFSNHLAVLANINMARQKTYRGRGVWK
FT                 FNTAHLMDSALEPELQRVWELCLRNSHRYRSKLEWWVTHVKPKLRSFLKSY
FT                 AFEKKQWERHTMEFYFRCLRDLHADEVNVSRHTVEINRLKAKITDLKRQQL
FT                 EGIKIRSRDNCGIEDEKPALFHLLSEVKRGRRQHISALTADDGRQITSQRE
FT                 ILMFAQDYYAKLYASSDTXDITTCEAFLNVIPPTVTDEENVDLEAQFTEEE
FT                 SSTLSTIHRRGIFDALKASPRNKSPGPDGLPVEFYVKYWSLFGSKLTEIFN
FT                 ELRTIDTVPSEFLEGIIVLVPKKCGTKELRNMRPISLLNADLKIVARVLLQ
FT                 RLKAVAARIIGPYQSCAVPRRSIQQALEEYRDITAVTAASNCRAAILSLDM
FT                 DKAFDRVRHEYLFQVMSKMGMRPYFINIIRRLYTGAASRILVNGHCTAKVP
FT                 ILTSVRQGCPLSMMLFAISIEPFLRTLYVQLPGLEIGGHKYVCRGYADDLA
FT                 VYMSDPSDLTTIREVIETYSSCSGAQINLRKSHILQLGKGIEFVGTGPFEL
FT                 SDVIKLLGISYNNCPVKTAAWNWKMRLNSLRAVLRENSTRSLNIFQKTMLI
FT                 NLVILPKVYYLASIFPLPATIGARIESALAWFIWRGSLLRVAYSTATLPEA
FT                 KGGLGLTNVKKKCKALLISRTGKALATGDGNLTAYIVNAVTPPDRRAPVMV
FT                 GHINYKLRHVQQYILDNSYIQQRVRNYTTKEIYKVLTEDSGVSKVQRNNPT
FT                 IAWNRVWKNIHLKTSASHVRATWYCAVHNIISTNERLCRIGMSNTDKCMDC
FT                 QQTDTTLHRFTCGAANDVWQWVRHKIAVMNRTSESNVTVEELLAPPGGRIQ
FT                 TKKGCPPTG"
XX
SQ   Sequence 5679 BP; 1723 A; 1294 C; 1354 G; 1302 T; 6 other;
     gtcgcggccg agcggccgta gcgagcggaa gtgtggtgtt tacgccttcg cggctggtgt        60
     ccgggcgctg ttggtgagtt taacgccgta gagcgttgca ctcttgtttc ataamgaaca       120
     catagtagac gtaaccataa tggaacctaa aaggaaagac actttgaaga tctcatttga       180
     taataccctt ccgcgaccga aatcatttga tgtagaagac tttttgatgg aaaaattgca       240
     gttaactagt gacgacatta ttggaataca tctctcgatt agtagcagta ctgtgtattt       300
     gaagttgmgt aatcctacca aatgtgacca aattgtcgaa ttatatgcga acaaattgaa       360
     gtttaaacat cctgacggaa gtatcggtga cgttcaagtt acgcatgcag gtcttggaac       420
     gaggactatt cgcatatttg aactgccgtt cgaaatcaca gacgaggaaa ttaatgctgt       480
     tctgagaccg tacggcactg tacttagcaa tgtagctgaa aaatggtctt ctgctcataa       540
     atttcaagtt ttaaacggcg taagacaggt cagaattgag atgaccaaac acgttccgtc       600
     atacataacc gtctgtggat acagggctat agtgatttac gagggccagc cgcgaacgtg       660
     ttctggatgc ggtgccaccg gccacgtgcg cgctcagtgt ttacagcgcc gagtgacgca       720
     actgccgcga ggcgagacgg tagcacaacc cgctatgacg cagcttcccc tgacctatgc       780
     agcggcagct cgcggaatta cggaaccaac gacagaagcg cctctccagg acgctattag       840
     taacaccgag gaagacgcac gcatggaaac cgttcaagta gacgaacccg tcggagatgc       900
     acttcccgaa cattctgctg agcgcggaca gagcagtagt acggagccag cacggaaccg       960
     tccacggaat gagggcctgc cccccgcaca caccactgac tcgcagccgg cggacaacaa      1020
     tttgtcatcg ccgacagttc aagatatggc tgaaaactat tcaaaagaca ccaaaaagag      1080
     acgtatcgcc catcaaggag tggacaaaac ggcgcccgcc ctacgggaaa aggccaaaca      1140
     agtccgacaa aaattgcagg gcgtgccaac cgcagccaag aagacagtct gcaaacagta      1200
     aaaaaatcac ggacggcgaa attgacagaa gaagtgacgg aacaagttgg gcggaaagca      1260
     acggccgctg atattttsca ggttgcaggc gaacaggtaa ccaacctgcg gaagcatcga      1320
     cgggaaaaga gtgcacacga aaaccatcca aatgccagct tggggggatg atgaagacag      1380
     cggcgcttcg gatcaagaaa tgcctgaagc tccgaacgaa aagggacaag gaaggaaaga      1440
     aaataaaacc aagccaacac aacaccatgc atctctggat gcacatacag cgacttccgc      1500
     gtctgacgac agggacaata ctaagcttca cagtaagaat caccgatgga tgtagtacag      1560
     catgatagtc atgatgcagt tcctcctgcc aacggcgtca acacatctgc gtcctcattt      1620
     aacagcatgc cttgtcacgt ggacaggaaa gccagtcgtt cgtcggcgat acaaagtggc      1680
     gtcacggggg ctgacaggac tgatgccgac atggaagaca acttttatta ataggaacac      1740
     ttcatcttat tgcaatgaca gctaatattc ctctacaatc atacagtata gccaccgtta      1800
     acatcaaccg aatcgtaagc caaacgaaag tagaatgcct acgcgatttt atctacgctt      1860
     ttgacataga cattgtcctg cttcaagaag tgtgtacaga cagggttgaa cagatcgcgg      1920
     gatacagtgc aattctcaac cggggcactg aaagtggtac tgccacgtta ttgaaaaacg      1980
     gcattatacc gcggaacgtg agaaagctag cgagtggacg aggaatatca gtggaaacag      2040
     acacagcaca gatcattaac atctacgcac cgtcgggttc caatgccaga caggctagga      2100
     tacatttctt ccaagaaagt ataattgagt taataaatcc tgcgaccgaa aacaccatac      2160
     tagccggtga ttttaactgt gtcatttccg caaacgatca gatgccgaat cccaacatat      2220
     gtattcaact gggagatttg gtggatggat tgcaccttac cgacatctgg cacaaccatc      2280
     cacgtgcgaa cgcagggttc acgtttatca ccagccactc gaagagtcgg attgatagaa      2340
     tatatacttc tcctagtctg acccggagtg tactcagtgt cgaaacctgt ccagtcagtt      2400
     tttctaacca tctggcagtt ttagcaaata ttaacatggc cagacagaag acctatcgag      2460
     gtagaggtgt gtggaaattt aacactgcac atttaatgga cagtgcatta gaaccggaat      2520
     tacagcgagt ctgggaactg tgtctgagga actcacatcg atatagatct aagctcgaat      2580
     ggtgggtcac acatgtgaaa cccaaacttc gatcattcct caagagctac gcgtttgaaa      2640
     agaagcaatg ggaaagacac actatggaat tttactttcg gtgcttacgc gacttacatg      2700
     ccgatgaagt caatgtgtct cgccataccg tcgaaatcaa tagactcaag gccaaaataa      2760
     ccgacttgaa acgccaacaa ttggaaggca tcaaaatacg atcgagggat aactgtggaa      2820
     ttgaggacga aaaaccagca ctcttccatc tcctgtcgga agtcaagaga ggacggcgtc      2880
     agcacatcag tgctctcacc gcggacgacg gcagacagat cacttctcaa cgtgagatct      2940
     taatgtttgc ccaggactat tacgctaaac tgtatgcttc gagcgacact tmtgacatca      3000
     ccacatgtga agcgtttttg aatgttattc caccaacggt gacggacgaa gaaaatgttg      3060
     atcttgaagc acaattcaca gaagaggaat cttcgacgct ttgaaagcaa gccctcggaa      3120
     caaatcccct ggacccgacg gtttgcctgt tgaattttat gtaaagtatt ggtccttatt      3180
     tggcagtaaa ctgacggaaa tttttaacga actacgtact attgatacgg ttccmagtga      3240
     gtttttagag ggcatcatag tgttggtccc taaaaagtgc ggaacaaaag aattgcgaaa      3300
     catgcgccct atttcgctgc taaacgcgga tctcaagata gttgctcggg ttttgcttca      3360
     aagactgaaa gctgttgctg ctcgtatcat cggtccctat cagtcgtgcg ccgtccctag      3420
     aagatcwata cagcaagcgc tcgaggaata ccgcgatatc acggccgtca ccgcggcatc      3480
     caactgtaga gcggccatct tgtcattaga tatggacaaa gcatttgaca gggttcgaca      3540
     tgagtacctg tttcaggtga tgtccaagat gggtatgcgg ccatatttca taaatattat      3600
     ccggcgactg tatactggtg cggcttccag aattcttgtg aatggacatt gtacagcaaa      3660
     agtacccatt ctaacttcgg tgaggcaagg ttgccccctt tcaatgatgc ttttcgccat      3720
     atcaattgag ccattcctac gaaccctgta cgtccagctg ccgggtcttg aaattggagg      3780
     ccataaatac gtctgtcgag gttatgcaga cgacctggct gtgtatatga gtgacccctc      3840
     tgacctcact acaatccgag aggtgatcga aacgtatagc tcttgttctg gagcgcaaat      3900
     caatctacgc aaatctcata ttctgcagct ggggaaaggg atagaattcg tcggaactgg      3960
     ccccttcgaa ctgagcgacg ttatcaaatt acttgggatc agttacaata actgccctgt      4020
     caagacggca gcttggaact ggaaaatgag gctcaacagc ttacgagcgg ttttaaggga      4080
     gaattccacc cgctccttaa atatatttca gaaaaccatg ttgattaatc ttgtgatatt      4140
     gcccaaagtg tactacctcg cgagcatatt tcccttgcct gcaacaatcg gggcacgtat      4200
     tgaatccgcg cttgcgtggt ttatatggcg gggtagtctc ctcagggtag cctactccac      4260
     ggcgaccctc cctgaagcaa aaggcggcct gggactcacc aacgtcaaga agaaatgtaa      4320
     agcgctgctt atatctagaa cgggtaaggc cctagctact ggagacggca atcttacagc      4380
     gtacatagta aacgcagtga ctccacctga cagaagggcg ccagttatgg tcggacacat      4440
     caattacaag ctgcgacatg ttcaacaata catacttgac aacagttata ttcaacaaag      4500
     agtaagaaac tatactacca aggaaatata caaagtgctg acagaagata gtggcgtcag      4560
     taaagtacaa aggaacaatc ccacaatcgc ctggaataga gtgtggaaaa atatacattt      4620
     gaaaacctcg gcatcacatg tacgggctac gtggtactgc gcagttcaca acatcataag      4680
     cacaaatgag cgcctctgca ggatcggcat gtcaaacact gacaaatgca tggactgcca      4740
     gcagaccgac accacactac atcggttcac ttgcggtgct gctaacgacg tatggcaatg      4800
     ggtacggcac aagatagcag ttatgaaccg tacatcagaa agtaatgtaa ctgtagaaga      4860
     actgttagcg ccaccaggtg gccgtatcca gaccaaaaaa ggatgtccac ctactggttg      4920
     atgggcaggt tcatcaattt ctgcctgggc aatgagagga agtccctact ggaatttcag      4980
     catgatatct tgcagagtac tcaaaatact ctaaactccg gaaatggaaa gagatgatgg      5040
     gaggctattt acctgcagtt cttgaaataa ggtgaccaac gaattagtga cgattacatt      5100
     ttagactaca catgagcatg ataaactatt attctcttac gtatcccaca gggttttgtt      5160
     gacatacatt ccaaggaaaa tgttgtgcat cgaatagttt ctgttcgtca tttttgttta      5220
     tttaaagtag caggagtatt gctctttatt tgtaggaaga gacttttatc atttagttac      5280
     acagttattt tagatgcaca aaaccactcc ggtttcctta aaatgaagag gtaaaggaat      5340
     cctacatact tttgtttgga agatatcttc ctcgtcggtt ggttcaacgt gaacgggagt      5400
     gtggagcagt aagcagtaca gcgctctgag tagcgagaag acaaacacgt gaagtcaaat      5460
     tgagtaactg acaataagag attaacacga tcagcatata ccggaagcca atttttcttc      5520
     ggaagacaca ctcaaagcaa acacgtaaat gcgactgtcc cttccgacgt ccagcgacgc      5580
     atcacagaaa aggcatagaa gccaggccga gaaggcaaca tggagagcga aaggatgggc      5640
     tagaagggga gtgggaggcc caaagaaaaa aaaaaaaaa                             5679
//
ID   Tx1-2_AAe   repbase;    DNA;    INV; 4945 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4945
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1458-1458 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >98%
CC   identity. It is positioned at the deepest branch of the Tx1
CC   clade, and does not show sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           124..1185
FT                 /product="Tx1-2_AAe_1p"
FT                 /translation="MDGLVKNTLMFRFPDGAPGPSVVEIARFVKSFDADKF
FT                 TMESSYKISEERCICIKFMNERAMKDALMQNPENHVFQYSSGETVEVKMSV
FT                 AGGCSKYIRIFDLPPEVPDQEIGNVLGKYGVVRRMVREKFPAQLELDLTTG
FT                 VRGVYIEIKKEIPATLFFLNRRGRIYYEGVKHKCFLCKQEGHLKADCPRNT
FT                 SNNKRNTEVVENAEVGRPDSAGSSSVSSPPQPPSFAAMLKSKPPVVGTEGS
FT                 KMTLLVPAAKMVAEPVCNSEEGESSHVVKAPATQNADKTIGATVDTDDSDG
FT                 LPNMEVDCSATKRQHEGSSTEDEGNTRASRSRKQKKDSDPLKIIESEPIQS
FT                 KGKDRRARSKN"
FT   CDS           1548..4802
FT                 /product="Tx1-2_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNVIRKVASININAIRVDVKKSLLKEFILTNDLDIVL
FT                 LQEVAFDDFSFLPSHLAVVNRDGKCSGTALLVRKSIEVHDCMKSPCGRIIS
FT                 MIIDGVNFVNIYAHAGSQFKAERDDLFEVQTITHMSKVAATDTIVGGDFNC
FT                 ILENDDTRGNFKNVCRGLKTLTNRFNLMDVELKIKGHKKQFTFFRNDAASR
FT                 IDRFYSTNNLFKKISKFETNAIPFSDHHAIQFCYQIEPNLRSPVVGRGYWK
FT                 IKNFLLQDADVTEEFDNVYNSLKSRNKYNNNFAEWWSFDVKNKIRQFYKSK
FT                 FFEFSNRNRTQKDLCYAKLKQLEIKQMNGQNVSDELAKTKSDIINIETNRL
FT                 KSISSNFKPNTMLENEKMGIYQVSKIVKMQSNPNVLQLKNDKGVLCDQLET
FT                 KQIVYDHYKDLFAGRHDNVAADCMLNSLTKVLSANSKQDLIEPITENELLD
FT                 TIKRCTLKKAPGPDGITYEFYLVHYTTLKTDLLKLFNGIFNGSVKPLESFS
FT                 DGIVTLIPKIGNKNDINNYRPISLLNTDYKLLCKIIANRLKKCLEELIDEG
FT                 QTAGIKNKSCTDNLDIIRTLVIKAQQSKKFKFALLSLDLEKAFDKVCHERL
FT                 WEIMLKFDIPQQVVNCIKQLYKNAFSKVLVNGFLTQSFKIEKSVRQGCPLS
FT                 MLLFTLYIEPLIRHLNKSLSGILILNRFVRVLAFADDLTLIIRSDQEIDAV
FT                 MGILENFSKFAGIKLNLRKSGFLRFNNCAIGPQKITEKDELKILGIFIGTN
FT                 YRKVVETNYRKVIQAINATIQAHMSRRLNLLEKVVVLNTYILSKLWYVAQI
FT                 LPASNIHIAQIRKITGSFLWGYHRIFKIERSQLYLHYFKGGLNLIDVDTQC
FT                 KSLFVRSLLFKGATAISHYLIRTHNLKGLSLNTQRLIQKAKEIKDMTHLVT
FT                 NKQIYEYMLTKLNIEIKVEKKYPQIHWEVVWENINQNFLSLSARSTLYEIF
FT                 NDIIPNKIKMFNNLANIDSFSCDVCGKPDNNVHRFMNCIKTADIWNWVSDI
FT                 IKNRLKIKITSPHLLLYRGIGKHNCRLKAALWLVCEAIVYNVKNHKNPSLY
FT                 MFKKDIRDYRWNNRILFCKHFKNYLNIC"
XX
SQ   Sequence 4945 BP; 1688 A; 823 C; 999 G; 1434 T; 1 other;
     cagttgacga tcagatctcg ttcagtatag acgctttcta ttagatcgga ggctttgcac        60
     aaaagagctk gttaacagtg gttgtatatt gtgttggaaa caaagtgaaa caatagctag       120
     acaatggacg gtctcgtgaa gaatacgctg atgttcagat ttccggatgg tgctcccggc       180
     cctagcgtcg tggaaattgc gcgtttcgtc aaatcgttcg atgcggataa gtttacaatg       240
     gagagcagct acaagatttc cgaagaacgg tgcatttgca tcaaattcat gaacgaacga       300
     gcaatgaaag acgctctcat gcaaaatcca gagaatcacg tgttccagta ctcaagtggt       360
     gaaacggtcg aagtcaaaat gtcggtcgcc ggaggatgta gcaaatacat ccggattttt       420
     gatctgccgc cagaagttcc cgaccaggag attggtaatg tgctcggaaa gtatggagtt       480
     gtacgtcgga tggtgcgaga aaagtttcca gctcagctgg aactggacct aaccacggga       540
     gtccgcggtg tgtacatcga gatcaagaaa gaaatcccgg caactctatt ctttctcaac       600
     cggcgaggaa gaatctacta cgaaggtgtg aagcataagt gtttcttgtg caaacaggag       660
     ggccatctga aggcagactg ccctcggaat acatcgaaca acaaacggaa cacggaagtg       720
     gtcgaaaacg cagaagttgg ccggcccgat tctgctgggt cctcttctgt gtcttcaccg       780
     ccacaaccac ctagtttcgc tgcgatgctg aagagtaagc caccagtcgt tggaactgag       840
     ggaagtaaga tgacgctgct agttccagct gccaaaatgg tggctgaacc cgtgtgcaac       900
     agtgaggaag gcgaatcgag ccacgtggtt aaggctcctg caacgcagaa tgctgacaaa       960
     acgattggcg caacggtcga cacggacgat agcgacggcc tgccgaacat ggaggttgat      1020
     tgctcggcaa cgaaaagaca acatgaggga tcttcaacag aagatgaagg taacacgcga      1080
     gcttccagaa gccggaagca gaaaaaggat agtgatccgc taaaaatcat tgaatccgag      1140
     cccattcaat cgaagggaaa agatcggagg gcaaggtcga agaattgaga ttagggatgc      1200
     cgtcttttgc gaacttttaa gtgatgatga ctttggctat ggttttggag ttttgattat      1260
     ggatggtttt tatacttctg ctgggatttc cttcgtattt tatggctgcc ttgaaaatct      1320
     tttgctacgt ttatatggac atggtatcgg aaaatgatat gtacttctat tgcttttatg      1380
     gattggaact ttggctacgt ctcaggttat gagcccggat aacgatttac actttaatag      1440
     ggatcacctt ccgttttatt attatgacaa cttcagcaac gtttactgtt atgatttttg      1500
     gataacgatt aattactttg aaaatttggc gttatattta ttctgaaatg aacgttattc      1560
     ggaaagtagc ttcaattaac ataaatgcta taagagttga tgttaaaaag tcgcttttga      1620
     aagagtttat tttgaccaat gatttggata tagttcttct acaagaagtc gcatttgacg      1680
     atttttcttt tttaccatca caccttgccg ttgtaaaccg ggatggaaaa tgctctggaa      1740
     cggccttgct agtacgaaaa tccattgaag tacatgattg tatgaaaagc ccatgtgggc      1800
     gaattatttc gatgattatt gatggtgtta attttgtaaa tatttacgcg catgctggtt      1860
     ctcagttcaa agcagagcgg gatgatttgt tcgaagttca gacaattact cacatgagta      1920
     aagttgcagc taccgatacg atagtaggcg gtgatttcaa ttgtattttg gaaaatgatg      1980
     atacccgtgg gaacttcaag aacgtttgcc gaggtttaaa aacccttaca aatcggttca      2040
     atcttatgga tgttgagctg aagatcaaag gccataaaaa gcaatttacc ttttttagga      2100
     atgatgccgc ctcgcgcatc gatcgatttt attcaacgaa caatttgttt aaaaaaatta      2160
     gtaaatttga aactaatgcg attcccttct ctgaccacca tgcgatccaa ttctgttacc      2220
     aaattgaacc caatctaagg tcacctgtcg tagggagagg gtactggaag attaaaaatt      2280
     tcttgttgca agatgctgac gtaaccgaag agtttgataa tgtgtataat agtttaaaat      2340
     ccagaaataa gtacaataat aattttgcag aatggtggtc tttcgacgtt aaaaacaaga      2400
     taaggcaatt ttacaaatca aaattttttg aattcagtaa tcgaaaccga actcaaaaag      2460
     atctttgtta cgctaagctg aaacagttag aaatcaaaca aatgaatggt caaaatgtga      2520
     gtgatgaatt agcaaaaacc aaatcagata ttataaatat agaaactaat cgcctaaaat      2580
     ccataagctc caattttaaa ccaaacacga tgttggagaa cgaaaaaatg ggtatttacc      2640
     aagtatctaa aattgtgaaa atgcaatcta accctaatgt gctacagcta aaaaatgata      2700
     aaggtgttct ttgtgatcaa ttagaaacta agcaaatagt ttatgatcat tataaggatt      2760
     tgttcgctgg aaggcatgat aatgttgcag ctgactgtat gttgaattca ttaaccaaag      2820
     ttctaagtgc aaattcgaaa caagatctta ttgaacccat aacagaaaat gaattgctag      2880
     atactattaa acgctgtact ttgaaaaaag cacctgggcc agatgggatc acctacgagt      2940
     tttatctagt tcactacact acattaaaaa ccgatctact aaagcttttc aacggaatat      3000
     ttaacggttc agtgaaacca ttagagagtt tttccgatgg gattgtgaca ctaatcccga      3060
     aaataggaaa caagaatgac ataaacaatt atagaccaat tagtctattg aacaccgact      3120
     acaagctttt atgtaaaatt atcgcaaacc gtcttaagaa atgtcttgaa gaacttattg      3180
     atgagggcca aacagctggt atcaaaaaca aaagttgtac agataatctc gacatcattc      3240
     gtactcttgt aattaaagct caacaatcaa aaaaattcaa atttgctttg ctcagtctag      3300
     atctggagaa agcttttgac aaggtttgcc atgaacgttt gtgggaaatc atgcttaagt      3360
     ttgatatacc gcaacaagtc gtaaactgca ttaagcagct atacaaaaat gccttttcta      3420
     aagttttagt aaacgggttt ttgacacaat cctttaaaat agagaaatca gtacgacaag      3480
     gttgtccttt gtcaatgtta cttttcacgt tatacattga gccattaata agacatttaa      3540
     ataaaagttt atcaggaatt ctgattttga acagattcgt acgtgttctt gctttcgcag      3600
     atgatttgac tttgatcatt agatctgacc aagaaatcga tgcagtgatg ggaattttag      3660
     aaaatttctc taaattcgct ggtataaagc tgaatttaag gaaatcaggt tttttgcgtt      3720
     ttaacaattg tgcgatagga ccacagaaga tcactgaaaa agatgaattg aaaattttag      3780
     gtatttttat tggtaccaat tatagaaaag tagtcgaaac caactacaga aaagttattc      3840
     aagcaataaa tgctacaatc caagctcata tgtctagaag acttaatctt ttggaaaagg      3900
     tcgttgtttt aaacacctat attctctcga aattgtggta tgttgctcaa atcttaccag      3960
     ccagcaatat acacattgca caaatacgta aaataacggg aagtttttta tggggttatc      4020
     atagaatctt taaaatagaa cgctcacaat tatacttgca ttattttaag ggagggttga      4080
     atttaataga tgtagacact cagtgtaaat ctcttttcgt gagaagttta cttttcaaag      4140
     gtgccactgc tataagtcac tatttgataa gaacacacaa tttgaaagga ctaagtttaa      4200
     atacacaacg tcttattcag aaagcaaaag aaatcaaaga tatgacgcat ctagtaacta      4260
     acaagcaaat ttatgaatac atgttaacta aactaaatat tgaaattaag gttgaaaaaa      4320
     agtatcccca aatacattgg gaagtagtat gggagaacat caatcaaaac tttttaagtt      4380
     tatcagctag gtcaacattg tatgagatat ttaatgacat cattccgaac aaaattaaaa      4440
     tgtttaacaa tcttgctaac atagatagct tttcatgcga tgtgtgtgga aaaccagata      4500
     ataacgtcca tcggtttatg aattgtataa aaacagctga tatatggaac tgggtgtctg      4560
     acataatcaa aaaccgatta aaaattaaaa taacttcgcc acatttgcta ctttatcgtg      4620
     gaataggaaa acataattgt agattaaaag cagcattatg gctagtatgt gaagcaatag      4680
     tgtacaatgt caaaaatcat aagaatccaa gtttatacat gttcaagaaa gatatacgag      4740
     attatagatg gaataatcgc atactgtttt gtaaacattt caaaaactat cttaacatct      4800
     gttgaacacc aacagaattt agttaatgat tagaattaag gtacatttta ttaaaaaaaa      4860
     acactatgta tgttagacta tacattgtta tgtttgtgaa tgttgtaaaa agttaaataa      4920
     acagtaaaaa tgaaaaaaaa aaaaa                                            4945
//
ID   Tx1-2_CQ    repbase;    DNA;    INV; 4715 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-2_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4715
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 634-634 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           153..1346
FT                 /product="Tx1-2_CQ_1p"
FT                 /translation="MANSVRKNTAKLVFGPGIKVPSYLDVLKFSMDTLKLS
FT                 AADIHSIYKDENGGQFYVKLIDEETFSAFIAESDEHYQFKFEDGTTARVAV
FT                 EQASRVFRYVRIFNLPPEIDDATIQYVLGQYGTIRQHVRERFPNELKVNIF
FT                 TGVRGVHMEVAKEIPAHLYIGHFRARIFYDGLKNKCFFCKAEGHVKQNCPK
FT                 MAAISTGSGSGSGSSGGSGSSAPSLGRPAKPIIDFGQPIAPAMTLLNQKKN
FT                 DDTQNPITTTSTQAVPSASTTTTVAVPSASTTTSPSVSTPAPISSTTVAPS
FT                 ASTTTTKQTVDTNTNDGVLDALRPGGVSEEHIDKADTDAMDAEISELDRQT
FT                 LLKRTKSSSPVSSEGDAGKLGGKGKGGKGKGGPTGEGDGFIPVPNGKRNKK
FT                 KKTT"
FT   CDS           1411..4656
FT                 /product="Tx1-2_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MATTTFSRKLATININAISTNIKLGLLKDFVWNNDLD
FT                 IVFLQEVSFENFKFLASHFAFVNISVDNKGTAVLIRKNIEFDNMLMNPNGR
FT                 ILSVTIDKVHFINVYGHSGSQYRHQRDVLFSNDIIPHLSAAHPNVILGDFN
FT                 CILLNSDSNGTVKNLCQGLKDLTSNLDLIDIGNSIHRNTIYTFFRGDSASR
FT                 IDRIYGPKDFLEKVLSFDTLTTAFSDHRAIVLKFNVDSNSNVTSTGRGFWK
FT                 INPSFLHDEDIKREFVLEIQNTRQRFAYNNNFCRWWIEHFKPKAKSFFKTR
FT                 SFELNKFITSSKSFLYGCLREISCKQSNNENVEKELSFVKSKLMNIEQNRL
FT                 SNLKLKIQPENIIEDEKLSTFQMSKYAAKNSIMKLLINGNLTSEKTKLQLA
FT                 LENHFSLLFEGDKTFYPGVNNIFNHVKNRLTLEQSNNLIKPIDLNELQEAL
FT                 QQASKKKSPGPDGLTYEFYCTFFDEIKNDLLKLFNLFLMGEIPNTAFVEGI
FT                 VTLIPKKEQSFEISDKRPISMLNCDYKLFAKIIMNRLQPLMDSLIGPGQAA
FT                 GISEKSCITNLKLLRNLIIKAKKSKSLKVLVASFDLEKAFDRVDHHFLWLT
FT                 LEKFGFPIQFVNLIRNLYKNASSKILFNGFLTNNIFIKSSVRQGCPLSMAL
FT                 FIIYIEPLIRMLYDDVRGCLIDNSFLKVIAYADDINVVIRNNHEFDKTLEL
FT                 INYFSIFAKIRLNVGKSQYMRLNNCLSGPHVLKEVSSLRILGIDLSENFNT
FT                 IIENNYSRIILNIKFLISIHHKRKLNIYQKSWILNQIILSKLWYIAQVFPP
FT                 NNSNIAEIRTICRNFIFKGVGLYKVKFDQLYLDVDQGGLSLVDVESKCKAL
FT                 FVKNILFPSQDGIKDSFMLSQQTNNTLSRNSREWLSLAEEISNDTDLNTSK
FT                 KIYRLLISKQNIKIKIATEFPELPWQNYWQNIQSNFISSEEKHSLFIMLND
FT                 LIPTKAKLFRHKVRDTNTNLCEYCNKLDTSKHRIKLCSSSRLVWNSVKTTI
FT                 IRKLGLDIVDPEELLGKTFKNEKEKLGLWLVVEAIAYNLKNFGNGTVADFE
FT                 CKVREKRWNNKKFYDRVFGKWICYI"
XX
SQ   Sequence 4715 BP; 1597 A; 904 C; 894 G; 1318 T; 2 other;
     cagtctcgga cgtgagctcg tacgaacaag acgtatttcc atcgacgctc tcgagaataa        60
     gtccggtttc gaacaatagt cctccgcggc tattgtttcg tacgcgtttt tctttgttag       120
     ctaaaagcgg aatcttcccc ggaagagtaa aaatggcgaa cagtgtacga aagaacactg       180
     cgaagttggt cttcggacca ggaatcaagg taccgtcgta cctggacgtg ctgaagttct       240
     cgatggacac cctgaagctg tcagcagcgg atatccacag catttacaag gacgagaatg       300
     gcggccagtt ttacgtcaag ctgattgacg aggagacttt ctcggcgttc atcgccgaat       360
     cggacgaaca ctaccagttc aagttcgagg acggaacaac ggcaagggtg gcggtagagc       420
     aggcatcacg cgtcttccgg tacgtccgga tcttcaatct gccaccggag attgacgacg       480
     ccacgatcca gtatgtgctg ggtcagtacg ggaccatacg gcagcacgtg cgcgaacgtt       540
     ttcccaacga gctgaaggtc aacattttca ccggtgtacg aggggtgcac atggaggtgg       600
     cgaaggaaat tcctgcacac ctttacatag gacatttccg agcccgcatc ttctatgatg       660
     ggctcaaaaa caagtgcttt ttctgcaagg cagaagggca cgtcaagcag aattgcccca       720
     aaatggcggc gatctcaaca ggcagcggta gtggcagcgg cagcagcgga ggcagcggca       780
     gctcggcgcc gtcccttggt aggcctgcaa aaccgatcat cgatttcggc cagccgatcg       840
     ctcctgcgat gacgttgctt aaccagaaaa agaacgacga cacacaaaac ccgatcacca       900
     cgacatcaac gcaagcagta cctagcgcct ccaccactac aacggtagcg gtaccgagcg       960
     cttccacgac aacatcacca agcgtctcca cwccagcacc aatatcatcg acaacggtag      1020
     caccatctgc aagcaccaca acaaccaagc aaacagtgga cactaacacc aacgacggcg      1080
     tgctggacgc tttgcggccg ggcggcgtga gcgaagaaca catcgacaaa gcagacaccg      1140
     acgcgatgga cgccgagatc agcgaactcg atcgccagac gttgctgaag cgaacgaaga      1200
     gttcctctcc ggtctcttct gagggtgatg cgggtaagct gggtgggaag ggaaaggggg      1260
     gtaagggaaa gggtgggcca actggagagg gggatgggtt cattccggtt ccaaatggta      1320
     aacgcaacaa gaagaagaag acaacctaaa tcatccatcg ttccatcgtt ttatcgtacc      1380
     atcaataact aaaaaaaaaa catcttaata atggccacaa caacattctc tagaaaacta      1440
     gccacaatta acatcaacgc tattagcact aacatcaagc taggtttatt gaaggacttc      1500
     gtgtggaata atgatcttga tattgttttt cttcaggaag tgtcgtttga aaactttaaa      1560
     tttcttgctt cccattttgc ttttgttaat atcagtgtcg acaacaaagg aactgctgtg      1620
     ttgattagaa aaaatatcga gtttgataac atgttaatga acccaaatgg tcgaattctg      1680
     tcggtcacaa tcgataaagt tcactttatc aacgtttatg gtcattccgg atcacaatac      1740
     cgacaccaac gtgacgttct gttttcaaat gatatcatcc cacacctatc tgctgcccat      1800
     cccaacgtaa ttctaggcga ttttaattgt attcttttaa attcggattc aaacggaacc      1860
     gtgaaaaatt tatgccaagg actgaaagac ctaacatcwa atcttgattt aatcgatatc      1920
     ggaaattcaa ttcaccgtaa tacgatttat acatttttca gaggagattc tgcatccagg      1980
     attgatagaa tttatggacc aaaagatttt ttggaaaaag ttttaagttt cgatacatta      2040
     acaactgcct tctctgatca ccgtgcaata gttttgaaat ttaatgttga ctcaaattct      2100
     aacgtcactt ccaccggtag aggtttctgg aaaataaatc cctctttttt gcatgatgag      2160
     gatatcaaac gtgaatttgt tttagaaatt caaaacacca gacaaagatt tgcatataac      2220
     aataattttt gtcgatggtg gattgaacat tttaaaccaa aagcaaaatc attttttaaa      2280
     acaagatctt ttgaattgaa taaatttata acatctagta aaagcttcct ttacggttgt      2340
     cttagagaaa tatcatgcaa acaaagcaac aatgaaaatg ttgagaagga actatctttt      2400
     gtaaaatcca aattgatgaa tattgaacaa aatcgacttt caaatttaaa attaaaaatc      2460
     caaccagaaa atataattga agacgagaaa ctaagtacat ttcaaatgtc taaatacgct      2520
     gcaaaaaact ctattatgaa acttttaatt aatggtaacc ttacttctga gaaaactaaa      2580
     cttcaattag ctttagaaaa tcattttagc ttattattcg aaggcgataa aactttttat      2640
     ccaggtgtaa ataatatttt taatcacgtg aaaaaccgtt taactcttga acaaagcaat      2700
     aatttaataa aaccaattga tctcaacgaa ctacaagagg cactacaaca agcttctaaa      2760
     aagaaaagtc caggaccaga tggactgaca tacgaatttt actgtacttt ctttgacgaa      2820
     ataaaaaatg accttttgaa actttttaat ctatttttga tgggggagat tcctaatacg      2880
     gctttcgttg aagggatagt aacattaatt cctaaaaaag aacaatcctt tgaaatttct      2940
     gacaaacgtc cgattagcat gttgaactgt gattacaaac tttttgctaa aatcattatg      3000
     aatcgattac aaccccttat ggattcttta attggaccag gtcaagctgc aggtatttct      3060
     gaaaaatctt gtatcacaaa tctaaaactg cttagaaatc taattatcaa agcaaaaaaa      3120
     tctaaatcat taaaagtact tgttgcaagt ttcgatttag aaaaggcttt cgatagggtt      3180
     gatcatcatt ttctttggct aaccttagaa aaatttggtt tcccaattca atttgttaac      3240
     ttaattcgta atctgtataa aaatgcttcc tctaagatac tatttaacgg ttttctcact      3300
     aataacattt tcataaaatc atctgttcgc caagggtgcc ctttgagcat ggctttattc      3360
     atcatttaca tagaaccact tattcgcatg ctttacgatg acgttagagg ttgtctaata      3420
     gataatagct ttttgaaagt tattgcctat gcagatgaca ttaatgtcgt tattcgcaat      3480
     aatcacgaat ttgataagac cttggagctc atcaactatt tcagcatttt tgctaaaatt      3540
     aggttgaatg ttggaaagtc tcaatacatg agactaaaca attgcctctc gggtccacat      3600
     gttctcaaag aggtctcatc gctcagaata ctaggaatag atttatctga aaattttaac      3660
     actatcattg aaaacaatta ctctagaatt atacttaaca ttaagttttt aatttcgatt      3720
     catcataaaa gaaaactaaa catttaccaa aaatcatgga ttttaaatca aattatttta      3780
     tctaaattat ggtacatagc acaagttttc cctcctaata attcaaatat cgctgaaatc      3840
     agaacgatct gcagaaattt tatttttaaa ggtgttggat tatacaaagt taaatttgat      3900
     cagttatact tagacgttga tcaaggagga ctatctctcg ttgatgttga aagtaaatgt      3960
     aaagcactat ttgtaaaaaa catattattt cctagtcaag acggtatcaa agattcattc      4020
     atgttatcac agcaaactaa caacacgctt agtcggaact cacgtgagtg gctaagtttg      4080
     gcagaagaaa tatcaaacga tactgattta aacacaagca aaaaaatcta ccgtttgttg      4140
     attagtaagc aaaatattaa aatcaaaatc gcaaccgagt tccctgaatt gccgtggcaa      4200
     aattattggc agaatataca atcgaatttc atttcctctg aagaaaaaca ttcgctattc      4260
     attatgctca atgatcttat tccaacaaaa gcaaaacttt ttcgccataa ggttagggat      4320
     actaatacaa atttgtgtga atattgtaat aagttagata catcaaagca tcgtataaag      4380
     ttatgtagca gcagtagatt agtttggaat agcgtaaaaa caactataat tagaaaacta      4440
     ggcttagaca ttgtagaccc tgaggagttg ctagggaaaa cgtttaaaaa tgaaaaagaa      4500
     aaattaggtt tgtggttagt agttgaagca attgcctaca atttgaaaaa ctttggaaat      4560
     ggtacagtag cagattttga atgtaaagtt agggagaaac gatggaacaa caagaaattt      4620
     tacgacagag tttttggaaa atggatttgt tatatttgaa gatttgaaga cctataaata      4680
     aacagccttt aaaccggaaa aaaaaaaaaa aaaaa                                 4715
//
ID   Tx1-2_FoCa  repbase;    DNA;    INV; 5891 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-2_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5891
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2713-2713 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.5% identical to consensus. No clear target preference.
XX
FH   Key           Location/Qualifiers
FT   CDS           256..1596
FT                 /product="Tx1-2_FoCa_1p"
FT                 /translation="MLGQEDPLEGSPAPSYSKAATMAVMPPDPTSSALDKS
FT                 KGVLIRRIKGVTLSELLEALGKVISPKKILYADFVTAANFGVWLDTDKSVD
FT                 DLIGLDTLEIKGQMTKMYRYTNPVHRVVLRNVPPFIPDTVILSYLQKYGEI
FT                 RGALERQSCYNVGEDFAHVKSFTRNVSLAISDGVIVPPGLTISWENKKHVI
FT                 YVQVGAKKCFKCNKPGHTSNNCPTKATVPVSRPTPKTSKRKSVPLTIPVED
FT                 QGQTESQKRRRFDSLPSQNEGSGMTDSELDSSLTLGSERPKRRKPGRPPNQ
FT                 TDRSVTRSLSAATVPISSPTTWAFDVWKKGNFKTYPSFNKEHLYMFLRNLK
FT                 RDFFKGGYTHFYEQVAMATRNPQELHDLLFEVVNSLGKSQELVRTEMHDIL
FT                 KLVSKYIDLSSEEIEKIKDRTDLNFRNFELQAYQLANKLSDDEMQKFRKYF
FT                 FN"
FT   CDS           1603..5163
FT                 /product="Tx1-2_FoCa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MALNIWTLNCQGLNNAVKRSCLNSVIVKFSPDIVCLQ
FT                 ETNINISKSESFVLSSYKTFYNSSTTLGSGTIVLVKNQFNVLSNSILIPGK
FT                 LQHISVEVFGQTFYFYNIHFPFNNLDSFNFLRILKSSICTCPSQDNVFLAG
FT                 DWNFVLNESLDRLRSVERRKGIVIEFSKICQNFNLSDAYRHLNPFGCDMTY
FT                 FSKLKNNSEARLDRIYINASQFPNVVKCQMFPFISDHVIFNIFLKFDHSFD
FT                 FKNIWIFPNHLLNIDDFNFSISFLLNDFILKSDYSEESYTFLKNKIVQVSM
FT                 EFGISFKRRFKYVVKKVQKDIQLVSSSQHLSNADIFKIFIDSLDNTFSNFL
FT                 VCQDYPKKKINCRDNPVSISNSFSNMSLESKLSLITDFFQTKFECKAVDFT
FT                 NFDNFMQGIPTVPGEQSEQLAAKISSTEIAACISKLQNDKAPGLDGLTHEF
FT                 YKKFSEQFSIILENVAQFSLNSGRFPLCMRTAISSLIHKKGSVDDLSNFRT
FT                 ISLTNSDYKILSNVLKSRLLPILPLLVGPWQTCGIKGRSIYDNLTFMRDAF
FT                 QSNELVGALFSLDQEAAFDRVSFEYLIKILEKYGFPPNFIKYIKLLHTDFS
FT                 ISVVVGNTFTRKIPLKVGLKQGDPIASVLYVLVIEPFLFKLNSRLLTSGPA
FT                 AWPRVPDKYLSAYADDTTALLSSQEQVQIVINEYSYFSQFSASKLNSSKSE
FT                 LLFLGGTTWVETNFPTRKDGLKILGIFFGNTSFMEQNFTLLFEKFCRKLSF
FT                 YNSKTCAVSFFSRAKILNTYLLPILWYVLKVLDPPETFITEITILIENFLW
FT                 RGSKRWVGRHLLYLPLANGGIGVRHPFIQMTTFRVVFACKVLNSSDSYFCN
FT                 FARKNVFNILLKNEPDYCTSFYDNFCKYVQILGLSFELIPHNIFHLIPLSN
FT                 SIFLKNNSFPCLIQLGCETIGDFISFDFSQNMPRFPSQRLISCESSILRNI
FT                 IDTYVLSQECITFRCLKYGNGGEFESFVKTKQYLLCTRIVRKIKWSEVSLD
FT                 TLNNSAWLTLQKSEVSNPEKDVIYKLLHNTGLTPKMAESMGIHEGRDCPFC
FT                 PFKDIKSSHYFKCVHFQPLWLFISKILSRDLTNVSRSGINGSRNMKYDNIF
FT                 IYYGLCTIYKSYVHFLNHFGDNFDYLSHFRHMVFGRILSEFHVCMRGGKVL
FT                 MDNFHRKWKKYKLYTMINNRININLNLK"
XX
SQ   Sequence 5891 BP; 1743 A; 1089 C; 1088 G; 1971 T; 0 other;
     gcgcgaacgg agaaccgagt agactttcta atttctttct ctgatggttt tttttagttt        60
     tctaaaaatt tatcttttct gagtagctaa gaagttttgg ctagtggtca aatattggct       120
     agggtcaact tcaacccaag gaagtcaaag tttctccaaa tttgcataaa gtgtgcagtt       180
     ttagtgcagt tttttgtgtg gattttttag cagtgtaatt tatggtgtga cgtcatctca       240
     gccaccacca ccacaatgtt ggggcaggaa gatcccttgg aaggatcccc tgctccttcc       300
     tacagcaaag ctgcgaccat ggcggtcatg ccacctgacc ccacatcctc cgcgttggat       360
     aagtcgaaag gtgtgcttat ccgaagaatt aagggagtca cactcagtga gcttttggag       420
     gctctcggta aggtgatttc tcctaaaaaa attttgtatg cagattttgt tactgctgct       480
     aattttggtg tctggttgga cacggataag agtgtggatg acctaattgg tcttgacacc       540
     ctcgagataa aaggtcaaat gaccaaaatg tacagataca ctaatccggt acacagggtg       600
     gtccttcgta atgttccacc ctttataccg gatacagtaa ttcttagtta cttgcaaaag       660
     tatggtgaaa ttcgtggcgc tttagaacgc cagtcgtgtt acaatgtggg tgaagatttt       720
     gcccatgtaa aaagtttcac tcgtaatgtg tccctcgcta tttcggatgg tgttattgtt       780
     cctccaggtt taacaatctc ttgggagaac aaaaaacacg tgatttatgt tcaggtgggg       840
     gcaaagaaat gcttcaagtg taataagcct ggacatacta gtaacaactg tccaacaaag       900
     gcaacagtcc cagtttcacg accaaccccc aagacctcca aacgtaaatc tgttcctcta       960
     acgattcctg tggaagatca gggtcaaact gaaagccaaa aacggcggag gtttgactcc      1020
     cttccaagtc aaaatgaggg gtcaggaatg acggattccg aacttgattc ctcattaaca      1080
     cttggctcag aaaggccaaa aagacgcaaa ccgggtagac caccaaatca aactgaccgt      1140
     tctgtgacca ggtcattgag tgccgctacc gtgccaatct caagtcccac cacctgggct      1200
     ttcgatgttt ggaagaaggg taactttaaa acctaccctt ctttcaataa agaacatctt      1260
     tatatgtttc tgaggaacct aaagcgcgat ttttttaagg ggggctatac ccacttttac      1320
     gaacaagtag caatggcgac tagaaaccct caagagttac acgatctcct ttttgaggtg      1380
     gtgaattctt tggggaagag tcaagagtta gtacgtaccg aaatgcatga catattaaaa      1440
     ttagtgtcaa aatacatcga tttgtcatcc gaagaaattg agaaaattaa ggacagaact      1500
     gaccttaatt ttcgaaattt tgagctacag gcctaccaac tggccaataa gctttcggat      1560
     gatgaaatgc aaaaatttcg caaatatttt tttaattaac atatggctct gaacatttgg      1620
     acacttaatt gtcagggttt gaataatgct gtcaaacgca gttgcctaaa ttccgtaata      1680
     gttaaatttt cccctgatat tgtttgttta caagaaacaa atattaacat ctcaaaatct      1740
     gaatcatttg tgctgagctc ttataaaact ttttataatt cgtctactac tcttggtagt      1800
     ggtactattg ttttagttaa aaaccaattt aatgttttaa gtaactctat tcttattcct      1860
     ggaaaacttc aacacatttc tgttgaagtt tttggccaga ccttttattt ttataacatt      1920
     cattttccct ttaataatct ggatagtttc aactttttgc gtatcttaaa gtcttccata      1980
     tgtacttgtc ctagtcaaga taatgttttt cttgctggtg attggaattt tgttctcaat      2040
     gagtcgctag accgtttacg atcagttgag cgtcgcaaag ggatagtgat agaattttca      2100
     aaaatatgcc aaaattttaa tctttcagat gcgtatcgtc atcttaaccc ttttggttgt      2160
     gatatgacgt attttagtaa attaaaaaac aattcggagg caagattaga tagaatttat      2220
     attaatgcta gtcagtttcc taatgttgta aaatgtcaaa tgtttccttt cattagtgat      2280
     cacgtgattt ttaatatctt tctcaaattt gaccattcgt ttgattttaa aaatatatgg      2340
     atttttccga accacctttt aaacattgat gattttaatt tttcaatttc ctttttactc      2400
     aatgacttta ttttaaaatc cgattactct gaggaaagtt ataccttttt aaaaaataag      2460
     atagttcagg tttcaatgga gtttggcatc tcgtttaaac gtagattcaa atatgtagta      2520
     aaaaaagtac aaaaggatat tcagctcgtt agttctagtc aacatcttag taacgctgat      2580
     atttttaaaa ttttcataga tagtttagat aatacttttt ctaatttttt agtttgtcag      2640
     gattacccga agaagaaaat aaattgtcgt gataatcctg tatcaatttc taattcgttt      2700
     tctaatatgt cccttgaaag taaattgtcc ttaattactg acttctttca aactaaattt      2760
     gaatgtaagg cagtggactt taccaacttc gataatttta tgcaaggaat tccaactgtt      2820
     cctggggagc aatcagaaca gcttgctgca aagattagtt ccacagaaat tgcggcgtgc      2880
     atttccaagc tacaaaatga caaggcacct ggacttgacg gacttacaca tgaattttac      2940
     aagaaatttt cggagcaatt ctccattatt ttagagaatg ttgcacaatt ctccttaaat      3000
     agtggtagat tccccctatg catgcgcacc gctatttcaa gcctaattca taaaaaaggg      3060
     tctgtggatg atctctccaa ctttaggacg atttctttga ctaactcgga ctacaaaata      3120
     ttatccaacg ttttaaaatc ccgactactt cctattttac ccttactggt gggtccatgg      3180
     caaacgtgtg gaattaaggg tcgttcaatt tatgacaacc ttactttcat gcgtgatgcc      3240
     tttcagtcaa atgagcttgt gggggctctc ttttcactcg atcaagaggc agcttttgac      3300
     cgggtgtctt ttgagtattt gataaaaata cttgagaaat atgggtttcc tccaaatttt      3360
     attaaataca ttaaactctt gcataccgac ttttctatct cggttgttgt cggtaacact      3420
     tttactagaa agattcccct gaaagttggt ctaaaacagg gagatccgat tgcttcagtc      3480
     ttgtacgtac tcgtaattga accatttctt tttaagctga acagccgtct cctgacgtct      3540
     gggccagccg catggccaag ggtacctgat aagtacctgt ctgcctacgc ggatgatacg      3600
     actgccctac tttcaagtca ggaacaagtc caaattgtaa ttaacgagta tagctacttc      3660
     tctcaattct cagcttctaa gctaaacagt agtaagtcag aattactttt cttagggggg      3720
     actacttggg tagagaccaa tttccccacc agaaaggatg ggttaaaaat tctgggtata      3780
     ttttttggga atacaagctt catggaacaa aattttacct tattgtttga aaaattttgt      3840
     aggaagttat ctttttataa cagtaaaact tgcgcagtta gttttttttc aagggctaaa      3900
     attttgaata cgtaccttct cccaatactg tggtatgtac tcaaggttct tgaccccccg      3960
     gaaactttta taacagaaat tactatctta attgaaaact ttctctggag aggatcaaaa      4020
     cgttgggtgg gacgccatct actctatttg cctctggcaa atggggggat tggtgtgcgt      4080
     catccgttta tccagatgac aacttttcgt gtagtatttg catgcaaagt cctaaattcg      4140
     agcgactcgt atttttgtaa ctttgcacgt aaaaatgttt tcaacattct cctaaagaat      4200
     gaaccagatt attgtacttc tttttatgac aatttttgca aatatgtaca aatacttggt      4260
     ctcagttttg aactaatccc tcacaatatt tttcacctta tcccgcttag taattcaatt      4320
     tttttgaaaa ataatagttt tccatgttta attcaattgg ggtgtgaaac cattggggat      4380
     tttattagtt tcgatttttc ccaaaacatg cctcgctttc catctcaaag gttaatttct      4440
     tgtgagagta gtattttgcg taatattatt gacacttatg tactatctca agagtgtatc      4500
     acatttcgat gcctaaaata cggcaacggg ggtgagtttg aatcttttgt gaaaaccaag      4560
     cagtatttac tatgtactcg tattgtgcga aaaataaaat ggtctgaggt atcactcgac      4620
     accttaaata attccgcctg gcttaccctt caaaaaagcg aggtgagtaa tccagagaaa      4680
     gacgtaattt ataaactttt gcacaatact ggtctaacgc caaaaatggc tgagtcaatg      4740
     ggcatacatg agggtaggga ttgccccttt tgtccattta aagatataaa atctagtcat      4800
     tattttaaat gtgtccattt tcagcccctc tggcttttta tttcaaaaat tctcagcaga      4860
     gacctgacta atgtctctcg atcagggatt aatgggtctc gaaatatgaa gtacgataat      4920
     atatttattt attatggtct ttgcacgata tataagtcct atgttcactt tctaaatcac      4980
     tttggggaca attttgatta tttgtcccac tttaggcaca tggttttcgg acgaatattg      5040
     tctgaattcc atgtttgcat gcgaggtggg aaagttttga tggacaattt ccatcgaaaa      5100
     tggaaaaaat ataaactata cactatgatc aacaatagaa taaacattaa tctcaattta      5160
     aaataatatt ttgataaaat ttcccacctt caggtagtta aaatattctt acataagcat      5220
     gtattattct acaaatctct tcctaagaat tatttattga cttgtcattg tactaaataa      5280
     cgtggtcatg aagcagagtg agtcagaggc agtgtttaat tcctacccct gatgacacaa      5340
     gtaaagtcct cctcccaaga agatccaccg ccgtgggaga ctaaactgta attagcattt      5400
     aattttactt cttgtattaa gttgcatttg gcacatcttt cctaaattct tttaaagaac      5460
     ctatagaaat ttcaaaaaat gcgagcgtac ccgggttggg aaggttcttt attttcagtc      5520
     atttcctagc acttggcatc ggtaaggtta gggacgcgtt gacataccca cagccccagg      5580
     gaggatccca acccattacc tggcgtcgtg ggtatgtcaa caacttaggt gtcaggttag      5640
     gctgaatctt cttatttcct tatcatataa agccatttct ttcagttttt cgtgaatgaa      5700
     tgaaatacga aattatatct ctaagttttc ggcatatttt aaatcatggc ctaattatag      5760
     ctgcatttgt atgatgatta ttccgttttt ttttagaata gttgtgtttg gaattctcat      5820
     tgtacgaact aatcttaaat atatgtaata aagggttgaa attccctaaa tttatttgag      5880
     tcgaaaaaaa a                                                           5891
//
ID   Tx1-2_LMi   repbase;    DNA;    INV; 5292 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.12, Created)
DT   13-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5292
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3482-3482 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(146..802,768..1508)
FT                 /product="Tx1-2_LMi_1p"
FT                 /translation="MAEVNRQDTLKFTFERSFAKPKSYEFEDWLETVVKIP
FT                 MDHVIGISFSIVSAVVFLKLKSPDLCEKIIASTGGSLKFNHNDGNVGDVTI
FT                 THAGFGIRTIRIFELPFEVPADRIDAALAPYGKVLSNFAEKWSSARKYPVL
FT                 NGIRQVKIDLHRHIPSYITVCGHRAIVIYDDQPKTCANCNSTGHVRAQCIQ
FT                 RRVAQIPRSEPEKTSAVTILPLSYAGGNPQSCLYRMPAVTRDRGGDNLLPQ
FT                 VTEVQDDNPIAEDSPMEINEETIPPLGASHETEKRDLPLATPAEVTDTQRS
FT                 VDEVHHREQQHVSDDSECSSQPSSPKRKNKKRRIVHQKAAEATPPPPEESK
FT                 HIDETLRTNLSGQPLSQNRTSSTETGDKEAPSKASETVVIDAKRGPQERAT
FT                 DSQVSNVIPLATDWTVESQEDMDTHMTDISTDNRTTAQNSQNIRVAAVNTT
FT                 KTNRNTKKNEVTECFPTNDFY"
FT   CDS           join(1514..2905,2856..4838)
FT                 /product="Tx1-2_LMi_2p"
FT                 /translation="MTDLQSYRIATVNMNKIRSAMKLKFVQDFLYAADIDI
FT                 AMLQEVTDINLEGIPGYNATNNPGNGPELGTAILAKEGVILQDVVRLPDSR
FT                 GLAATVNGTRLINVYAPSGTSNRRRRAEFFKTEIVPLFNARFDDIILAGDF
FT                 NCVIHPKDQTPNCNKSVELEQMIKELSLVDTWEHIHGLLPGFTYVTNHSAS
FT                 RIDRIYVSNNLQRHILQSEIWPTSFSDHAAYICTLNMKRQETYRGRGQWKF
FT                 NVSHLDDPECREAFSKTWEECVSKCNGYSSVLTWWLNCAKPKIRKCFMNYS
FT                 REKYWWQKQTIEFYFQCLRELYKLDTTVIDNYTKIKKIQAKIRLLRSKQLE
FT                 GVKIRSRATNTAPNEATSIFHLIRERKRGATKILSELKLQDGRTLKNQKDI
FT                 RNTIHNYYANLLANQPIDVNLMYELTSNLPRTLTPDDGRPLMEEIDEDDLK
FT                 AVIFQKAQKTNLPDKTAFLFFKKPKKQISRTRRHSYRSLSNFLACMKDKLL
FT                 SLYNELLDPNVSIPQEFKEGIVVFIPKSPRSNSIEKLRPITLLNSDYKIAA
FT                 RILTQRMKRVMHLVTGPHQTSVGKDRTILQTLAGYRDILAIADVCKLRCAI
FT                 TTIDLDKAFDRVNHQFLFHTMQEMGFPRRFTDIIKNLLQGSTSRISINGQL
FT                 GNVIQISSSVKQGCPMSMTLFAIAVEPLLATLTRRLRGLQIHGQHIVCHAY
FT                 ADDVGFVTNNAVEVETALRTIKEYEAASGAKLNWNKSGLMNIGLGIDWQHH
FT                 DQLKEVESMKCLGIDFKNTIQHTIAANYKHILTQVRACVQSYNTRHLDELQ
FT                 KVQLANTYILSKVNYAAQILPMPAAIAKCILAAIGHFVSRGRILKVKYDTL
FT                 TLPTRSGGLNLTDVLSKAKALYVCCTFKQWRKAPDSLISHLLNEIAPSNIV
FT                 APINVGHIPNGLYHLKSFLLEYSYIRMRIPDSHIMQVKAIYKNLMEVKARN
FT                 VIEQKYKNKKWSVIWENVHSPHLPSHVKAQWYFAVNRKIPTNYKLHALHLA
FT                 AHPTCTACGLVDSDEHRFVCVNGKEIWDYMAQKVAIMNRTTPQYITPANVL
FT                 TPDDKPYPATKRNATNWLKGQTTYYLLTSPDKCKQDFLVYLTEQLHELRRN
FT                 KKYKEYFANFLDKTILL"
XX
SQ   Sequence 5292 BP; 1729 A; 1204 C; 1113 G; 1244 T; 2 other;
     agtctgccag cggcagcgac agcgttcaga cctcgtgtgt gcagcgcgct gcggccggct        60
     ttgtttacat cggtgcggta agtcgcgagc ttacagcgtc actcggcggt gttcgtcact       120
     ctactgtata cgtgaacatg aagtaatggc tgaagttaac cgacaagaca ccttgaagtt       180
     tacctttgaa cgatcttttg cgaaaccgaa atcatatgaa tttgaagact ggttggaaac       240
     cgtggtgaag ataccaatgg atcatgttat aggaatttct ttttcgattg tcagcgcggt       300
     cgtgtttctg aaattaaaat cacccgatct ttgtgaaaaa atcattgcat ctactggagg       360
     gtcactcaag ttcaaccaca acgatggcaa cgtaggtgat gttaccataa ctcacgccgg       420
     tttcgggatt cgcactattc gaattttcga actgccattc gaagttccag cagaccgaat       480
     agacgcagcc ttggccccat atgggaaagt cttaagcaac ttcgcggaga aatggtccag       540
     tgcccggaag tatcctgtac taaacggtat taggcaagtc aaaattgatc tgcacagaca       600
     cataccgtcc tacattactg tatgcggaca cagagctata gtgatttacg atgatcaacc       660
     taagacgtgc gctaactgta actccacagg tcacgtccgt gcccagtgca ttcagagacg       720
     tgtggcacag ataccacgaa gcgaacctga aaagacatct gcggtgacaa tcctgcctct       780
     atcgtatgcc ggcggtaacc cgtgatcgtg gtggcgacaa tttgctgcca caagtgactg       840
     aagtgcaaga tgacaacccg atagctgaag attctccaat ggaaataaac gaagagacaa       900
     tcccaccact tggtgctagt cacgaaacag aaaaacgcga tcttcctctc gccactccgg       960
     cggaggtaac tgacacccag agatctgttg atgaggtaca tcatcgtgaa caacaacatg      1020
     tcagtgacga cagtgaatgc agttcacaac cctcatcacc aaagaggaag aacaagaagc      1080
     ggaggattgt acatcaaaaa gcagcggaag caacgccgcc accacctgag gaatccaagc      1140
     acattgatga aactttacgc accaatctgt cgggtcagcc actgagtcaa aacaggacat      1200
     cttccacaga gactggcgac aaagaagcgc ccagtaaggc atcggagaca gttgtaattg      1260
     atgcaaagag aggacctcag gaacgggcta ccgatagtca agtatcaaac gtgattccgt      1320
     tagcaacgga ctggacagta gaatcgcaag aagacatgga cacacacatg acggacatct      1380
     caacggacaa caggaccacg gcacaaaatt cacagaacat tcgggttgcg gctgtaaata      1440
     cgaccaagac taaccggaat acgaagaaga acgaagtgac ggaatgtttt cctactaatg      1500
     acttctatta aagatgaccg acttacaatc atatagaatc gccacagtaa acatgaataa      1560
     gatacgcagt gctatgaaat taaaattcgt ccaagatttc ttatacgccg cagacataga      1620
     tatcgcgatg ctacaagagg tgactgacat taatttggag ggaataccag gctataatgc      1680
     tacaaataat ccaggaaatg gcccggaatt gggaactgct atcctagcta aagaaggcgt      1740
     catccttcaa gatgtggtca gactccccga tagtagaggt ctcgcagcca ctgttaacgg      1800
     cacgcggctg ataaacgtat atgcaccgtc tggcacaagt aacaggcgcc ggagagctga      1860
     attttttaaa actgaaattg ttcccctttt taatgcacgg tttgatgaca ttatattggc      1920
     aggagatttt aattgcgtta tccaccccaa agaccaaact cctaattgca ataagtcggt      1980
     ggaattagag cagatgatca aggaattatc tttagtcgat acttgggagc atattcatgg      2040
     cctcctgcct ggttttacat atgtcacaaa ccattcagca agcaggattg acaggattta      2100
     tgtgtcgaac aacctccaga ggcacattct acagagcgaa atatggccga cgagcttctc      2160
     cgatcacgcg gcttacattt gtaccctcaa tatgaagaga caggaaacct atagaggcag      2220
     aggtcaatgg aaatttaacg tttcacattt agacgatcca gaatgtcgag aagctttcag      2280
     taagacctgg gaggaatgcg tgtctaaatg caacggctac tcctctgttt taacttggtg      2340
     gctcaattgc gccaaaccaa aaattcgcaa atgcttcatg aactattcgc gtgagaaata      2400
     ctggtggcaa aaacagacaa tagaattcta cttccaatgt ctaagggagt tatataaact      2460
     tgatacgacc gtcatcgata attacaccaa aattaagaaa atacaagcca aaattcgtct      2520
     gcttagatcg aaacagctgg aaggcgttaa aatcagatca agagccacga acacagcacc      2580
     caatgaagca acgtctatat tccacctcat acgtgaaagg aaaagaggcg ctacgaagat      2640
     actgtcggaa ttaaagttgc aggatggaag aacactaaaa aatcagaaag acatcagaaa      2700
     tacgattcac aattattacg ccaatctgct ggccaaccaa ccaatagatg taaatctgat      2760
     gtatgaattg acatccaatc tgccacgaac actcaccccc gacgatggca ggcctctgat      2820
     ggaagaaata gacgaagatg acttgaaagc cgtaattttt caaaaagccc aaaaaacaaa      2880
     tctcccggac aagacggcat tcctatagaa gtctatcaaa ctttctggcg tgtatgaagg      2940
     ataaacttct atccctttac aatgaattac tggatccaaa tgtttctatt ccccaagaat      3000
     tcaaagaagg aatagttgtc ttcattccaa aaagtccaag aagtaattcc attgaaaagt      3060
     tgcgccccat tacattactt aacagcgatt ataaaatcgc agctcgtatc ctaacacaaa      3120
     ggatgaaacg tgtgatgcat cttgttacgg ggcctcatca aactagtgtg ggcaaagata      3180
     gaaccatcct kcagacttta gcaggataca gagacatatt ggcgatagct gatgtctgca      3240
     aactacgatg tgcgataaca acaattgatc tcgacaaggc gttcgacaga gtcaaccatc      3300
     agttcctgtt tcatacaatg caagaaatgg gtttcccacg ccggtttacc gacataataa      3360
     agaacttgct acagggtagc acttcaagaa tttcgattaa cggccagcta ggcaacgtga      3420
     tccaaatcag cagttcggtc aaacagggat gcccaatgtc gatgacctta ttcgccatcg      3480
     cagtagagcc actactcgca acgctgacac gccggctgcg aggtctacaa atacacggtc      3540
     agcatatcgt atgccacgca tacgccgatg acgtaggatt cgtcacaaac aacgcagttg      3600
     aagtcgagac ggcgttgcgg accattaagg agtatgaagc ggcgtcaggt gccaaattaa      3660
     actggaacaa atccggcctc atgaatatcg gacttggtat agactggcaa caccacgatc      3720
     aactgaagga ggtcgaaagt atgaaatgtc tgggcattga tttcaaaaat acaattcagc      3780
     acaccattgc tgcgaattat aaacatattc tcacgcaggt acgagcctgc gtacaatcct      3840
     acaatacaag acacttagat gaactgcaaa aagttcagct ggccaataca tacattttgt      3900
     caaaggttaa ctacgcggca caaattttac cgatgcctgc agccatcgca aagtgtatac      3960
     tagcagctat tggacacttc gtaagtcgtg gacggattct taaagtcaaa tatgatacac      4020
     tcacactacc tactcgatct ggtggtttga atttaacaga tgtgctcagt aaggccaaag      4080
     ctctctacgt ttgctgcact ttcaagcagt ggcgaaaagc tccagacagt ctcatttcac      4140
     accttctaaa tgagattgct ccgagtaata tcgtagcacc gatcaatgtc ggccatatcc      4200
     ccaatggtct ctatcacttg aaatccttcc ttttggaata cagctatatc cgtatgcgaa      4260
     tacctgacag ccacatcatg caggtcaaag ccatctataa gaacctaatg gaagtcaaag      4320
     caagaaacgt gatagagcaa aaatacaaaa acaaaaagtg gtcagtcata tgggaaaatg      4380
     tacacagccc acatctacca tcacatgtga aggctcagtg gtacttcgcg gtgaacagaa      4440
     aaattccgac caactataaa cttcatgcac ttcacctggc agcgcatccc acgtgcaccg      4500
     catgcggctt agtcgatagc gatgaacatc ggttcgtatg tgtaaatggc aaggagatat      4560
     gggactacat ggcacagaaa gtggcgatta tgaatcgaac tactccccag tatatcacac      4620
     ccgcaaacgt actgactccg gatgacaaac catatcctgc aaccaaacgg aacgcgacga      4680
     attggttaaa aggacaaacg acgtactacc ttttaacgtc acctgacaaa tgcaaacaag      4740
     actttttagt atatttgaca gaacagctac acgagctccg acgtaacaag aagtataaag      4800
     aatacttcgc aaatttctta gataagacga tattacttta aacaactcag aaacgactca      4860
     ctgaaagatt agaaattctg cacataggaa gagaaaagaa aaagattagt cctttatcta      4920
     caacattacc acttaattac cttcgcacac tcttaaagat gtgctcatca atttgaattt      4980
     ctttattctt gccccaaaca tattttattt tgaagaagaa acgttttgtt catttatatc      5040
     attaccttta tacaagaatt agttgacagg cggcgctaca acttacttsa agctccagtg      5100
     ttcgagtcac ttcaataggc agcagaagat gccttttttt tttctttttt caaacatcgt      5160
     cacatccgtg aagatcggcc gtgacgccaa tttaagcaac ttactctatc caaccagaag      5220
     atacaatttt gagttttgta tacagtgaca gtagcacgag aacaggagta aaggcaatga      5280
     aaaaaaaaaa aa                                                          5292
//
ID   Tx1-3_AAe   repbase;    DNA;    INV; 4688 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4688
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1459-1459 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 16 sequences with >97%
CC   identity. It is positioned at the deepest branch of the Tx1
CC   clade, and does not show sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           132..1205
FT                 /product="Tx1-3_AAe_1p"
FT                 /translation="METRKNTVKLVFATSARVPIHLDVLRFMMRVLKIPAT
FT                 DVHSVYKDENDQRFYVKFIDENSFNRFSSTMEEQYWFEYADGEKIRVQLEM
FT                 ASRQFKYVRIFNLPPETEDKDIAAVLGQFGRIRQHVRERYPADYGYQVFSG
FT                 VRGVHIEIEKEIPANLYIGHFRARCYYEGLKNKCFFCKAEGHNKANCPKLA
FT                 EIKEKGVSGPANSRMYSQVAANLRIATSSSENESRPSSSMTVLQVPRHPSA
FT                 GKIQERGEKATPRETIGTCAEQVSAENVAEIQPAQIDVQDSHTNDGDNAGS
FT                 METDDTSRAHTEENGVKRPPATTSENDSSDVEKGKGKGRGRKKKQHTGNSS
FT                 NTSRSRSRGNSRGSF"
FT   CDS           1361..4606
FT                 /product="Tx1-3_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPYIRKIATINLNAISCRVKQHLLKEFVWNNDLDVVF
FT                 MQEVAFENFSFVPTHTAVVNISEDGKGTGILLRNNISYTNLVMNTNGRITS
FT                 LVIDGVNFINVYAHSGSKYKRERDNLFTDEILVHLGEFKENVVLGDFNCII
FT                 DKKDSTGAVKNICNGLKKLVGELDLLDVELSKNSHRVFTFLRGDSKSRLDR
FT                 LYGTKNFVERVRKVEILAVPFSDHHSVVVTVEIINSEQMNFYGRGYWKINS
FT                 SLFADEVIKEKFKSYYAQLKTRNSFQNISFWWNNDLKRGIKIFFKGESFKM
FT                 NQQLSREKSFYYKCFNDAAKYQALNIDVSEELKLAKSKLMNLEQSRLNRFR
FT                 SKLKANSLHSDEKLSFFHVTSFINKSSDSKLLKLKLDDGVTSNPSRLKEEI
FT                 FNYFYEKFKIDDNVRNGCGNTLEYLDRRVDENDKQRLIKPIEMIEIEHAIK
FT                 EASKNSSPGPDGINYEFYSTFFDLLKDDMQTLYNSYFVDGEYPPGLFSSGI
FT                 IALIPKKGDNFDLGNKRPISMLNSDYKIFTKLLCNRLKPIMEKLLGPGQTA
FT                 SIENSSCINNLSLLRNIIIKANKSRKFKGIILSVDLEKAFDRVDHQYLWDI
FT                 LKTFEIPNRFIECLQKLYKNASSKVLFNGFLTNSFPIKCSVRQGCPLSMAL
FT                 FSLYIEPLLRMIDKHIKGVLIDDVFVRVIAYADDLNIFIRNDEEFSIALEL
FT                 INYFSIYSKIKINFSKSHYLRLNNCSLGPQLISEARDIRILGLTFDEDYKK
FT                 MIDSNYNELIRNINYCLSLQYKRRLNVVQKIWILNTYILSKLWYVAQIIPP
FT                 ENKHIAVLRKKCGDFLWKGCFYKVERNELYAPALKGGLSLTCVESKAKALF
FT                 IKNLLLSGKQATTDKFMMEQIMNNKLNRNTREWIKLAVKFEERNLKTSKQI
FT                 YDDLITEKNIKIKQHDKQPHLQWETLYENVNQNFVCSESKSILFFVFRDII
FT                 PCKSKLYRHRVRGIDSPTCDSCGRIDSVEHRIKNCSGSEKIWSWLNGVMKS
FT                 KFKINVEDAIDLVQFGIKPKNCKFKAALWLVIETLTYCIKNHSTGCIADLK
FT                 QQISVKRWNNKKLFDCQFKQYMYLL"
XX
SQ   Sequence 4688 BP; 1624 A; 742 C; 1009 G; 1313 T; 0 other;
     cagtttatac tcggacgctg tagagtgaac acgtactcga gagtgcttgt caagttataa        60
     acgttttgct cacacctagt gtgatttttt ttcttttgtt aaaagcggaa tctattcagt       120
     gaatagatag aatggagact agaaagaata cggtaaaact ggtttttgct acgtcagcaa       180
     gggttccgat acatctggac gttcttcggt tcatgatgcg cgtgttgaag attccggcga       240
     ccgatgtaca ctcggtgtac aaagatgaaa atgatcagcg tttctacgta aaattcatcg       300
     acgagaacag ctttaaccgg ttcagcagta caatggagga acagtactgg ttcgaatatg       360
     cagatgggga aaagatccga gtgcaactcg aaatggcaag cagacagttc aagtatgtcc       420
     gaattttcaa tttgccccct gaaacagagg acaaagatat cgcagcagtc ctgggacagt       480
     tcggaaggat tcggcaacac gtgcgtgaga gatatcctgc agactatggc taccaggtgt       540
     tcagtggcgt aagaggagtc cacattgaga tcgaaaagga aattccggcg aatttgtaca       600
     tcggccactt tcgtgcaaga tgctattacg agggattgaa gaataaatgt ttcttctgca       660
     aggcggaggg acacaataag gccaactgtc ctaagctagc ggaaatcaag gaaaaaggag       720
     tctctggtcc agccaacagc aggatgtaca gtcaggtggc agcaaatcta cgaatagcaa       780
     ctagttctag tgaaaatgag agcaggccgt cttcgtcgat gacggtgctc caagttccga       840
     ggcacccaag tgcaggtaag atccaggaga gaggggaaaa agcgacgcca agggaaacaa       900
     tagggacatg tgcagagcaa gtgagtgctg aaaacgtggc tgaaatccag ccggctcaaa       960
     tagatgtgca agattcgcac actaacgacg gagacaatgc tggttcgatg gagacggatg      1020
     atacatcacg cgcacacacg gaggagaacg gtgtgaaaag accaccggcg accaccagcg      1080
     aaaacgatag ttcagatgtg gagaaaggga aaggtaaagg acgtggtcgt aaaaagaagc      1140
     agcacaccgg gaattcatcg aatactagca gaagccgctc gcgtggtaac tctcgtggaa      1200
     gcttctgatg gaatataaca cgactaaaat agtgacggta tgtgtgaaaa tattggacgt      1260
     ttttgggtga attgtttata gccctggttt cgatggtttc ggtggagttc tatttagact      1320
     gtagtcgttc tattaccgag tatcgtagtg tagagtgaac atgccataca ttcgaaaaat      1380
     agctacaatt aacttgaacg ctattagctg tcgagtgaaa caacacctac tgaaggagtt      1440
     tgtgtggaat aatgatcttg atgtagtatt catgcaggag gtggcatttg aaaacttttc      1500
     atttgtacca acacacacag ctgtggtaaa catcagtgaa gatggtaagg gtactgggat      1560
     tttgttacgc aacaacatca gttacacaaa tcttgtaatg aacactaacg gtcgaatcac      1620
     atcacttgta attgacggtg taaatttcat caacgtctac gcgcattccg gttcgaagta      1680
     caagcgagaa agagataatt tgttcactga tgaaatatta gtgcacttgg gcgaattcaa      1740
     agagaacgtc gttctcggag acttcaattg tataattgat aaaaaggact ctacgggcgc      1800
     agtgaaaaac atttgtaacg gactgaaaaa gttggttggt gaactcgatc ttttagatgt      1860
     tgaactttca aaaaattcgc atcgcgtttt tacctttctg agaggtgatt cgaaatccag      1920
     gcttgacaga ttgtacggta cgaaaaattt cgtagaacgc gtaagaaaag ttgaaatact      1980
     tgcagttcca ttttccgacc accacagtgt agttgtgacg gtggaaataa tcaacagtga      2040
     acaaatgaat ttttatggta gagggtactg gaagataaat tctagcctat ttgcggatga      2100
     agttataaaa gaaaaattta aatcttatta tgcccagttg aaaaccagaa attcgtttca      2160
     aaacatcagc ttttggtgga ataatgattt gaaaagaggg attaaaattt tttttaaggg      2220
     tgaatcgttt aagatgaacc agcaactatc tcgtgaaaaa agtttttact acaaatgctt      2280
     caatgatgca gcaaaatatc aagctttaaa catagatgtt tcagaagaat tgaaattggc      2340
     aaagtctaaa ctgatgaacc tggaacagag tcgtttgaac aggttcagaa gtaaactaaa      2400
     agcgaattct ttgcactcgg acgaaaagtt gtcttttttc catgttacat cattcataaa      2460
     caaatcttca gactcaaaat tgttgaaatt gaaattggat gatggagtca cctcgaatcc      2520
     atcgcggcta aaagaagaaa tttttaatta tttttatgaa aaatttaaga tcgatgataa      2580
     tgtgcgaaat ggctgtggaa ataccctaga atatcttgac aggcgggtag acgaaaacga      2640
     taaacagcgt ttgattaaac cgattgaaat gattgaaatt gaacatgcaa tcaaagaagc      2700
     atccaagaac agttcacctg gtccggatgg tatcaattat gaattttatt caacgttttt      2760
     tgatctactt aaagatgata tgcagacatt atacaattct tactttgttg atggagaata      2820
     tcctcctgga ctattttcct ccggaattat cgctttgatt ccaaaaaaag gagataactt      2880
     cgatctaggc aataaaaggc caatcagcat gctcaatagt gactataaaa tttttacaaa      2940
     attattatgc aaccgtttaa aaccaataat ggagaaacta ctaggcccag ggcagacagc      3000
     aagtattgaa aatagttctt gtataaataa cttgtcgtta ttgagaaaca ttattattaa      3060
     agcaaacaaa tctaggaaat tcaagggtat tatattgtcc gtagatctgg aaaaggcctt      3120
     cgatcgagtt gatcatcaat atctttggga tattttgaaa acttttgaga tcccgaatag      3180
     atttattgag tgtctgcaaa agttatataa gaacgcaagc tccaaagttc tgttcaatgg      3240
     atttttgaca aattcgtttc caattaaatg ttctgtaaga caaggatgtc cattaagcat      3300
     ggcactattt tcgctgtata ttgagccttt gttgaggatg attgacaaac atattaaagg      3360
     tgtacttatt gatgatgttt tcgtaagagt cattgcttat gcagatgatc tgaatatttt      3420
     cattagaaat gacgaagaat tcagcattgc attggaactg ataaattact ttagtatata      3480
     ttcaaaaatt aaaataaatt tcagtaaatc acactatttg agactgaaca attgttctct      3540
     tggtcctcag cttataagtg aagcgagaga cattaggata cttggactga catttgatga      3600
     agattataaa aaaatgatcg attcaaacta caatgaatta attaggaata tcaattactg      3660
     cttatctctg cagtataaaa gaagactgaa tgttgttcaa aaaatatgga ttttaaatac      3720
     ctatattctg tcaaaattgt ggtacgttgc acaaatcata ccaccggaaa ataagcatat      3780
     tgcggtgttg aggaaaaaat gtggggattt tttgtggaaa ggatgttttt ataaagtgga      3840
     gcggaatgaa ttatatgctc ctgctcttaa gggcggtctc tcgcttacat gtgtggaatc      3900
     gaaagccaaa gcacttttta ttaagaactt actattatcc ggaaaacaag ccactactga      3960
     taaatttatg atggagcaaa taatgaataa caaattgaat cgaaacacga gagagtggat      4020
     taaacttgca gttaaatttg aagagcggaa tttaaaaaca agcaaacaaa tttacgatga      4080
     cttaattaca gaaaaaaata taaaaattaa acagcacgat aaacagcccc atttgcaatg      4140
     ggaaaccttg tatgaaaatg ttaaccaaaa ctttgtatgc agtgagtcca agtcgatttt      4200
     atttttcgtg tttcgggaca taattccatg caaatctaaa ctatataggc acagagtgag      4260
     agggattgat tctccaactt gcgattcttg cggaagaatc gactctgttg agcataggat      4320
     caaaaattgt tcgggatctg aaaaaatatg gagctggtta aatggtgtaa tgaaatcaaa      4380
     atttaaaata aatgtagaag acgcgataga tttagtgcag tttggtataa aacctaaaaa      4440
     ttgtaaattc aaagcagctc tgtggttagt catagaaaca ttaacctatt gtattaaaaa      4500
     tcattcaact ggttgtatag cagatttaaa acagcaaata agtgttaaac gctggaataa      4560
     caaaaaactg ttcgattgtc aattcaaaca atacatgtat ttattgtaag tatttgtaaa      4620
     tagtcttaat caatgtcaag aactttgtag atataatgaa ataaatagtt aaaaaaaaaa      4680
     aaaaaaaa                                                               4688
//
ID   Tx1-3_CQ    repbase;    DNA;    INV; 4816 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-3_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4816
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 635-635 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >92%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           130..1143
FT                 /product="Tx1-3_CQ_1p"
FT                 /translation="MDKTRKNTLKMVFGNAAKVPAHVDVLRFTANVLKIPA
FT                 TDVHSIYRDENDRCFYVKFLDEPTFVEFTGRIEEQYRFVHSDGQVAVVKLE
FT                 VASRLFRYVRIFNLPPEIEEKDISAVLSQFGTIRQHVRERYPTEYGYTVYS
FT                 GVRGVHMEIAKEIPPNLYIGHFKARLYYEGLKNRCFYCKLEGHIKVNCPKI
FT                 ASLKSSTPAGSFSAIVAGAIAANATDLTLPTDMTTLTPQNKPPIQPRDPDR
FT                 GISPTPEEAGDDSEMDDDDEDEREEESGADESPDLGGDKHRKPRSSSRNVL
FT                 EQLENRSRSRSLIRPEGTGGNGGKNGKEGKGGKGGKGGKGRGRPRK"
FT   CDS           1377..4643
FT                 /product="Tx1-3_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MPLVRNIATANLNAINSDVKKSLLKDFIWNNDLDIIF
FT                 IQELSFENFAFLNSHTAIVNISANNKGTGILLRNNLQYSDIILNENGRISS
FT                 VCVDSINXINIYAHSGSNQKKERDTLFNEDILIHLAHGKENVIVGDFNCIL
FT                 LAEDMNGAVKNYCKGLQNLISGLELKDVEQTILKSRVNFTFXRGTSKSRLD
FT                 RFYASNEFINQISCIKTLPLSFSDHHGVLVKLNLKDNAPNIFIGRGFWKLN
FT                 SFFLNDNDILTQFTAMYNGLRNRNSFINLCYWWNEVMKTKSKSFFKKISFE
FT                 SNQQTIREKSFYYRCLNELFEKQKEGENVCSEMKIVKSKLMEIEQNKLRFY
FT                 RYTFRTSNLIENEKLSIYQITSRIKNSTPSKLISLRINNKVTSKTSELKSM
FT                 IFDHFKNIFCKRAESGSDNDDILEHITKTLNDAERDALSKPIELQELKDAI
FT                 FNASNNSSPGPDGLNYDFYKTFFDVLNTDLLNLFNGYLVNNEYPPGHFSAG
FT                 IISLIPKKGDPHDLNNRRPISMLNTDYKIFTKILWNRLQPMMKKLIGPGQS
FT                 ACISETSCVNVLRTLRNVLIKSKQTKHFKNLLLSIDLEKAFDSVDHEVLWK
FT                 ILKKFGLPDSFIRCISRLYQNATSKVLFNGFFTDSFKIECSVRQGCPLSMA
FT                 LFCLYIEPLIRMLFESVKGCLIGDCFVRVIAYADDISLLIRNDHEFDKALE
FT                 LINYFSIYAKIKINTVKSQFLRFNNCSSGPHQIKEVDNLKILGIIFHRNFD
FT                 TTISENYKDLINKLKYTISLHHRRKLNLFQKAFILNTYVLSKLWYIAQIFP
FT                 PNNKHIAEIRRICFKFLWQGYFYSVAKNELYLPIYKGGLALEDVEAKCKSL
FT                 FIKNILFFKTNSGSSVDEFMIAQSNNRAVTRNAREWINLAIELKPRTVLNT
FT                 SKLFYNYFIDQMSIKPRMQTEMQNLQWDLIFENLDKKFISSDTKTYLFSLL
FT                 NELIPTRSKMFRHGIAGIDSPNCILCGNLDTITHRIKSCDKSTVIWNWIKN
FT                 LVIVRIRINTRDPEELIALQFNSKSYKKNAGLWLVCEAIRFNLMNYGLDGM
FT                 GCLEKFKKEIRDARWNNKAVFAKYFKNVLNIF"
XX
SQ   Sequence 4816 BP; 1671 A; 850 C; 928 G; 1363 T; 4 other;
     cagttatcgc tcggacgttg atacgacaac acacgtttct acgagcactc ttcaacacaa        60
     tagtcttttg tgttcggcac acgccgtgtg tccttaacct caactaaagg aatttactga       120
     aaagcaaaga tggacaaaac ccgtaagaat acgctgaaaa tggttttcgg aaacgcagcg       180
     aaagttccag cccacgtgga tgtgctacgg ttcacagcga acgttttgaa gattccggcc       240
     acggatgtcc actcgatcta ccgcgacgag aatgatcgct gtttttacgt aaagttcttg       300
     gatgagccga ccttcgtgga atttaccgga agaatagagg agcagtaccg tttcgtgcat       360
     agcgatggcc aagtggccgt ggtgaaactg gaagtggcca gccggctgtt caggtacgtg       420
     aggattttta acttgccgcc agaaatcgaa gagaaagaca tttcggccgt tctgtcccaa       480
     tttggaacca ttcggcaaca tgtccgggaa cgctacccaa cggaatacgg ctacacggta       540
     tacagtggtg tgcgtggcgt ccacatggag atcgccaagg agataccgcc taacctctac       600
     atcggtcact tcaaagcacg cttgtactat gaaggtttga agaatagatg tttctattgc       660
     aaactggaag gacacatcaa ggtcaactgc ccgaagatag cgagcttgaa gtcttcgaca       720
     ccagccggat cgttcagtgc catcgtcgca ggggcgatcg cagccaacgc aactgatctc       780
     acactaccaa ccgacatgac cacgctgaca ccacaaaaca agccaccaat acaaccgcgc       840
     gatcccgatc gcggaatttc gccgacgccg gaagaagcag gcgacgacag cgagatggac       900
     gacgacgatg aagatgagcg agaggaggaa tccggcgctg acgaatcgcc cgatctcggc       960
     ggcgacaagc atcgtaagcc ccgaagtagt tcacgcaacg tactcgagca gttggagaac      1020
     cgwtctcgct ctcgcagcct gatccggcct gaaggtactg ggggaaacgg ggggaagaat      1080
     gggaaagagg ggaagggtgg aaagggggga aaggggggga agggaagggg tcgaccacgc      1140
     aagtagatta agtgatgatg gagaaggagg atagttcgtg cgaaaaagga ggagaatggt      1200
     agttggtatg atctgcaact gtgtaagaga agacgaatgt atgtgtgtgt gtgtgggtaa      1260
     aaaaacgtaa aaaaaacaaa gaggaggtaa agatgttcaa aatattgtgc gtacaatccg      1320
     gttccgatga tttgctttca attttatcaa actttttcga atttcaatag ccacttatgc      1380
     cactagttcg taatattgct accgctaatc taaatgctat caattccgat gtgaagaaat      1440
     cactacttaa agattttata tggaacaacg acttagacat tatttttatt caagaactat      1500
     catttgaaaa ttttgcattc ctgaattcgc atacagcaat tgtaaatatt agcgctaata      1560
     ataagggaac tggaattctt ttacgaaata acttacaata ttctgatata attttaaatg      1620
     aaaacggaag aatatcatcc gtttgcgttg actctattaa ctwtataaat atttatgcac      1680
     atagtggaag caaccagaaa aaggaaagag acacgttatt taatgaagac attttgattc      1740
     atcttgcgca tggcaaggaa aatgtcatag ttggtgattt taattgtata cttttggctg      1800
     aagacatgaa tggagcagtt aagaattatt gcaaaggact gcaaaattta atctctggac      1860
     tagaattgaa agacgttgaa caaaccatat tgaaatcacg agttaacttt acatttwtta      1920
     gaggtacatc caaatcacgc ttagacagat tttatgcatc gaatgaattt attaatcaaa      1980
     tatcttgtat taaaacgtta ccattaagct tttctgatca ccatggcgta cttgttaaac      2040
     tcaatttaaa agacaatgct cctaatattt ttataggtcg tggtttctgg aaactaaatt      2100
     ccttttttct caatgacaat gatattttga cgcaattcac ggcaatgtac aatggactaa      2160
     gaaatcggaa ttcttttata aacttatgct attggtggaa tgaagtaatg aaaacaaaat      2220
     caaaaagttt cttcaaaaaa attagctttg aaagtaatca acaaacaatt cgagagaaaa      2280
     gcttttacta tcgttgtctc aatgaacttt ttgaaaagca aaaagaagga gagaatgttt      2340
     gttctgaaat gaaaattgtt aaatcaaaat taatggaaat agagcaaaat aaattacgat      2400
     tttatcgcta tacttttcga actagtaatt taattgaaaa tgagaaacta agtatttatc      2460
     aaataacatc tagaataaaa aattcaacgc catcaaagct tatcagtcta cgtataaata      2520
     acaaagttac ttcaaaaaca tcagaactaa aatcaatgat ctttgaccat tttaagaaca      2580
     ttttttgtaa acgagctgaa agtggatcag ataatgatga tattttggag catatcacaa      2640
     agacgctgaa cgatgccgaa cgggatgccc tttccaaacc aatagaatta caagaactta      2700
     aagatgctat tttcaatgct tctaataatt cttcaccagg acccgatgga ttaaactatg      2760
     atttttataa gactttcttt gatgttttaa atacagacct gttgaactta tttaatggtt      2820
     atcttgtaaa taacgaatac ccaccaggac atttctcagc cggaataatt tcactcatcc      2880
     ctaaaaaagg tgatcctcat gaccttaaca ataggagacc cataagcatg cttaatacwg      2940
     actataaaat ctttactaaa attctttgga atagattaca acccatgatg aagaaactga      3000
     ttggccctgg acagtcagct tgtatctcag agacatcctg tgttaacgtt cttagaacat      3060
     tgcgaaatgt attgatcaaa tcaaaacaga ccaaacattt taaaaatctt ttacttagta      3120
     tcgatctgga aaaagctttt gacagcgtgg atcatgaagt tctgtggaaa atattgaaaa      3180
     agtttggact tcctgatagt tttattcgct gcattagtcg tctctaccaa aatgcaacgt      3240
     ctaaagtttt attcaacggt ttttttacag attctttcaa aattgaatgc tcagttcggc      3300
     aaggatgccc attgagtatg gctcttttct gtttatacat tgaacccttg attcgtatgc      3360
     tttttgagtc ggttaaaggt tgtttgatag gcgattgctt tgtaagagta atagcttacg      3420
     cagatgacat tagcttactc attagaaacg atcatgagtt tgataaggcc ctagaactga      3480
     ttaactactt tagcatttat gctaaaatca aaatcaacac cgttaaatct cagtttctga      3540
     gatttaacaa ctgtagttca gggccacacc agataaaaga agttgataat ttgaaaattc      3600
     taggcataat attccatcgt aattttgaca caacaatttc agaaaattat aaagacctaa      3660
     tcaacaaact taaatataca atttcactac atcatcgtcg taaattaaac ctttttcaaa      3720
     aagcatttat tttaaataca tacgtccttt ctaaactatg gtacatcgct caaatttttc      3780
     ctccaaataa caaacatata gctgagataa gaagaatatg ttttaagttt ctttggcaag      3840
     gttactttta tagcgttgca aagaatgaat tgtaccttcc gatttataaa ggaggtcttg      3900
     cattggaaga cgtagaagca aaatgtaaaa gtttatttat taaaaatatc ttatttttca      3960
     aaacgaattc tggttcctcg gttgatgagt ttatgattgc gcaaagtaac aaccgtgctg      4020
     taacgagaaa tgcgcgagaa tggattaatc ttgctattga attaaaacct cgaacagtgc      4080
     tgaacacgag taaattattt tataattatt ttattgatca aatgagtatc aagccacgta      4140
     tgcaaacaga aatgcaaaat cttcaatggg acttaatttt tgaaaatctt gataaaaaat      4200
     ttatatcatc tgatacaaaa acataccttt tctcactttt aaatgaactt attccaacca      4260
     gaagtaaaat gtttcgtcat ggaatagctg gaatagattc tccaaactgt atattatgtg      4320
     gtaatcttga cacaataact catcgaatta aatcatgcga taaatctact gtgatttgga      4380
     actggataaa aaaccttgta atcgttcgga ttagaataaa caccagggat cctgaagaat      4440
     tgatagcatt acagtttaat tcaaaaagct acaaaaagaa tgcgggtctg tggctggtct      4500
     gtgaagcaat tagatttaat ctaatgaatt acggattaga tggcatgggc tgcctagaga      4560
     aattcaaaaa agaaatacgc gacgctcgat ggaataacaa agcagttttt gcaaagtact      4620
     ttaaaaatgt tttgaacatc ttttaaaatt tgaacaaacc ccacacataa agaaattaaa      4680
     gatcatccaa tgattgtata tctagacgat tataaacatc gaaaaagcac aggatcccga      4740
     aactagaaaa aacaaattgt aaactaccgg aactatgtta aataaaacct ctttaaatcg      4800
     gaaaaaaaaa aaaaaa                                                      4816
//
ID   Tx1-3_FoCa  repbase;    DNA;    INV; 4372 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-3_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-4372
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2714-2714 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. No clear target preference.
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..557
FT                 /product="Tx1-3_FoCa_1p"
FT                 /translation="ESCEGSGEDVFEXDTDGSFSXDKSSSQPRTKRVRAKA
FT                 SKPQKISEWGYEKWIDANLLINSVTKDRFFLFLRSLRRVNYSIKSKYLNLG
FT                 QEIFITTKXPQDLEVVLEEVSCTIPSSESALRTKFASLLSQVREFLKLDTK
FT                 EHLKFQNELDDNYRSMEWQNFCHLHSIPLPEXDKYKPPFFNNKYAN"
FT   CDS           439..4089
FT                 /product="Tx1-3_FoCa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNLMTTIGQWSGRISATSIQSHYLSXISTSPPFLTTN
FT                 MPINVWTLNCQGLNSSVKKQALKSLINSFNPTVVCLQETNLNPIRHGVFNI
FT                 QNYTPFYNASTTLGSGIAFYIXHKCAVXSHDIIVPGKMSKILLTHLSQTFL
FT                 IINIHFPFLKNESNXFLLKIQREVTAAPSCDGIYMLGDWNFVVDSNRDRFG
FT                 NIENRKGLAKQFQNFIQSNGFFDTYRHLRPQGKDVTFVCRMNGTSARLDRI
FT                 YIQNCQLPNLIGQEIIPFMSDHMIFSVTIATNNNRNKCLWTCPTSIFNNSD
FT                 FVYTIESILEKFLSCDFSLENYELLKSKITRVAMETDLHCKMSLRKVIRCT
FT                 YNKLIRVNSVSRSEIFTKFIDNVEAAIRGDGVCSDFPDRKITTVHNGITVS
FT                 EALCDLPSDQRLKLVWNFFREKFSSPLINLSGLDLFMAQMPKINFPEFLDN
FT                 DLSENEILESITKSPNNKAPGLDGLPYEFYKVFSLQFSKILSLVAKLSCEE
FT                 GKFPKSCRSSVATLIFKANDPKDLKNYRTISLTNSDYKIISSAIKSRINTT
FT                 LPSVIGPWQTCGVKGRSIFDNLSFIRDAFQSCELEGLLFSLDQEAAYDRVS
FT                 HEYLYRVLHNFGYPKKIINYIRLLHTEFSLVISVGSDLTSPISFRVGLKQG
FT                 DPIASSLYCLAIEPFLFNLDNKLRDSGPSAWRRHPNIYLSAYADDTNALLG
FT                 NQNQISIVVSEYTKFSAFSSSKLNSNKSNILILGAYNLQIPVEFPVVSDGL
FT                 KILGIYFGHERYMAQNFLTMMTKFDSKLEFYTTKCAPVSHFSRAKIVNTFL
FT                 LPIFWYVLKVLDPPESFLGLICSKIENYVWATSKRWVARPYVYLPILNGGL
FT                 GVRSPAAQIATFRLTFVQKIMAQNNNTYFLTESELQTSKFINGDMNLSPFF
FT                 TNIQTMTQLLGLRLTSCSKDILNEIHIHSKIVFHDLSNNYISRCKVIKIKD
FT                 LFAEQFLTNLDSLPRATHRHVLAERAKHVNVVAMVTESTNTQLALFSLYDK
FT                 SILVSVVKETNYLHCLRSHVGIKWEELDNNFCSLPQWEHLVTTPISNPEKD
FT                 TVFKIWHNVGLTPSLAQSLHIYDNHCCPFCASVHPKVIHYLSCSYVTDLRQ
FT                 VVANLLTKVNICTQAFDEAFRHGTKHVGANILIFYAYYAIYQCFIHKLNNY
FT                 SGNYDLISSYRHMVYGRILMEFHACYLNKSILSKFYKKWEKFKIYSIDNNK
FT                 ININLGF"
XX
SQ   Sequence 4372 BP; 1386 A; 823 C; 785 G; 1367 T; 11 other;
     tagagtcatg tgagggcagc ggggaggatg tatttgagwg tgacaccgat ggttcgttct        60
     cacwagacaa atcmtcttct cagcctcgta cgaaaagagt gagggcaaaa gcgtcaaagc       120
     ctcagaaaat aagtgagtgg ggttatgaga agtggattga cgcgaatcta ttaattaact       180
     ctgtcaccaa agacagattt tttctatttt tgcggtcact gcgcagagtg aattatagta       240
     ttaaaagcaa atatcttaac ctagggcaag agatttttat aactactaaa wtcccccaag       300
     atcttgaagt agtgctcgaa gaggtatcat gcacaatacc tagtagtgag tcagctcttc       360
     gaacgaaatt tgcctccctt ttaagccagg tccgtgagtt tttaaaactt gatacgaaag       420
     agcatcttaa attccaaaat gaacttgatg acaactatag gtcaatggag tggcagaatt       480
     tctgccacct ccattcaatc ccattacctg agckggataa gtacaagccc ccctttttta       540
     acaacaaata tgccaattaa cgtatggact ctgaattgcc agggacttaa tagttctgtk       600
     aagaaacagg cmctaaaatc tttgatcaat tcctttaacc caacagtagt atgtctccaa       660
     gagacaaatt tgaatccaat tcgtcatggt gttttcaata ttcaaaatta tacgccattt       720
     tataacgcaa gtaccacttt aggaagtggt attgcktttt atatacamca caagtgcgca       780
     gtaamcagcc atgatataat cgtccctgga aaaatgagta aaattttgct cacgcattta       840
     tctcaaactt ttttgattat taacatccat ttcccgtttt taaaaaatga atccaatsag       900
     tttttattga aaatccagag agaggtcacg gctgcgccca gttgtgatgg catttatatg       960
     cttggcgact ggaactttgt tgtagactcc aatagggaca gatttggcaa catagaaaat      1020
     agaaagggcc ttgcaaagca attccaaaat tttatccagt cgaacggctt ttttgataca      1080
     tatcgtcacc tgcgcccaca gggaaaagat gttacctttg tttgtcggat gaacggtact      1140
     tcagctaggt tagatagaat atacattcaa aactgtcaat tgcccaattt aattggtcag      1200
     gaaattattc cgttcatgag cgatcatatg attttctcag taaccatagc aaccaataat      1260
     aataggaata aatgtttatg gacatgtcct acatctattt ttaataattc tgattttgtt      1320
     tatacgattg agtcaatttt agaaaaattt ttatcgtgcg atttttcttt ggaaaattac      1380
     gaactattaa aaagcaaaat tacccgggtt gccatggaga cagatttaca ctgtaaaatg      1440
     tcactaagga aagttatcag atgcacttat aataaactga tccgtgttaa tagtgtaagt      1500
     agatctgaga tttttactaa atttattgat aatgtggaag ctgcaattcg tggcgacgga      1560
     gtctgcagcg atttccctga ccgtaaaatc actaccgtgc ataatggcat cacagtgagc      1620
     gaagcgttgt gcgacttgcc atctgatcaa agattgaaat tggtttggaa ttttttcaga      1680
     gaaaagttct cctcccccct aattaattta tctggtctgg atctattcat ggcgcaaatg      1740
     ccaaaaatta atttcccaga atttcttgat aatgatttat ctgaaaatga aattttagag      1800
     tccataacga aatcccccaa taataaggcc cccggactgg atgggctacc ttatgaattc      1860
     tacaaagtat tttcactcca atttagcaaa attttgtcct tagtagcaaa attatcatgc      1920
     gaagagggta aatttcctaa atcttgtcgc agttcggttg caactttaat attcaaagct      1980
     aatgacccca aagatcttaa gaattatcgc acaatatcac ttacaaactc tgactataaa      2040
     attatatcaa gcgctataaa atcaagaata aatacaacgc ttccctctgt aattggtcca      2100
     tggcagactt gtggcgtgaa gggtagatcg atatttgaca acttgtcttt tattcgagat      2160
     gcttttcaaa gctgcgaact tgaaggacta ctttttagtc ttgatcaaga ggctgcttac      2220
     gaccgtgtca gccatgagta cctctaccga gtcttacata attttggcta tccaaaaaaa      2280
     attattaatt atattcggtt attacacacg gagttttcat tagtaatttc tgttgggtct      2340
     gacctaactt cccccatttc cttccgtgta ggtctgaaac agggtgaccc aatagcatct      2400
     tctctatact gtcttgcgat cgaacctttt ttgttcaatc tagacaacaa gttgagagat      2460
     tcaggtccta gcgcatggcg cagacaccca aatatctacc tctcggctta cgctgatgat      2520
     accaacgctt tgttgggtaa tcaaaatcag atttcgattg tcgtatccga atatacaaag      2580
     ttttccgcat tctcgtcctc aaaactgaac agtaataagt ccaatattct aattttggga      2640
     gcttataatc ttcaaatccc ggtagaattc ccagtagtgt ctgacggttt gaaaattttg      2700
     ggaatctact ttgggcatga gaggtatatg gcccaaaatt tcttgaccat gatgactaaa      2760
     tttgactcaa aactagaatt ttatacgacg aaatgcgccc ctgttagtca tttttccaga      2820
     gctaaaatcg tgaacacttt tttactccca atattctggt atgtgctaaa ggtattagat      2880
     cccccagaaa gttttttagg cttgatttgt tcgaaaattg aaaattatgt atgggcaaca      2940
     tccaaaaggt gggtagcgcg tccatacgtc tacctgccga tcttaaatgg gggtcttggc      3000
     gtgcgcagtc cagcagcgca gattgccacg ttcagactta catttgttca gaaaatcatg      3060
     gcccaaaata ataatacata ttttttaaca gagtcagagt tgcagacatc taaatttata      3120
     aatggtgata tgaatttgtc accgtttttc actaacatcc agaccatgac ccaactgctt      3180
     ggactaaggc ttacctcttg tagtaaggac atacttaatg agattcatat tcatagtaaa      3240
     atagttttcc atgatctcag caataattat attagtcgat gtaaggtaat taaaatcaaa      3300
     gatttatttg cagagcaatt tttaacaaat ttagactcgt tgccaagagc aacgcataga      3360
     catgtattag ccgagagggc gaaacatgtt aatgtggttg ccatggttac cgagtccact      3420
     aatactcaac tcgcgttatt ctcattatat gacaagtcca tactagtcag tgtagtcaaa      3480
     gagaccaact acctccactg tttacgatct cacgtaggta tcaagtggga agagctagat      3540
     aataattttt gctcgcttcc acagtgggag catttagtga ccacgccgat atccaacccc      3600
     gaaaaagata ccgttttcaa aatttggcat aacgtgggac tcactccatc acttgcacaa      3660
     tcactacaca tttacgataa tcattgttgc ccattttgtg cttccgtgca ccctaaagtc      3720
     atacactatt tatcatgttc atatgtcaca gatttgaggc aagtggttgc caatctgttg      3780
     acaaaggtaa atatttgcac acaagccttc gatgaagcgt ttcggcatgg caccaagcat      3840
     gtaggtgcaa acattctgat cttttatgcc tattatgcta tctatcaatg ttttatacat      3900
     aaacttaata attattctgg taattatgat ttaatctcca gttatcgtca catggtctat      3960
     ggacgtatac ttatggaatt ccatgcatgt tacttaaata aaagtatact ttctaagttt      4020
     tacaagaaat gggagaaatt taaaatttac tcaattgata ataataaaat aaacataaat      4080
     ttaggctttt gaataactaa ctttcttttt atattttctt gcctgactaa tccaaataaa      4140
     taaattagtt taagcaaaca aattatgtat taatagagta ataatatctt aagaggccag      4200
     aagattgaga ataacaggca gtggcttagt tcctacccct gacggccaaa aagttaagtc      4260
     ctgtttagaa gacgtcgcct caacatatta attaatattt attttaataa tttgatgtga      4320
     aatgtactta aattggaata aaattaattt tgcccttgtt aaaaaaaaaa aa              4372
//
ID   Tx1-3_LMi   repbase;    DNA;    INV; 5441 BP.
XX
AC   .
XX
DT   13-MAY-2014 (Rel. 19.12, Created)
DT   13-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5441
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3483-3483 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(138..1202,1069..1497)
FT                 /product="Tx1-3_LMi_1p"
FT                 /translation="MDNQPERIDTLKLSFDPNLPRPKSFEVELFLRDVMKI
FT                 TIDDIIGIHLSIVSSTVYLKLVSPTKCEQIIESCSGTLKFKHSDGHVGEVR
FT                 VSYAGFGVRTVRIFELPFEVTAEQINAKLKDYGNVISNVAEKWSGQHIFPV
FT                 LNGVRQVRIEMVKHIPSYITVCGYRAIVIYDGQPRTCSACGSTTHVRAQCV
FT                 QRRVAQIPTGERERQGPMSTLPITFAAAARVNTAPEPNLDVTLESYMEQKE
FT                 QHTPMEAETSPVTPQTAPQEVEESRQVXREQGDGLSEAVHVADCTPMNEQS
FT                 GFEETTNGRPRLPLRRNITKDGRHTKEQTETRKYCAKRQNRYAKNRKQLGS
FT                 FRQFSGPKKVSDQKTEGTRRSRRKRANTARKGKTDTPKIGNNSDHSGNSQA
FT                 LKKSRTEDPESVQGKQTSTVQTKMDTVDQDDKSKHPTEREPASGNRNPTGX
FT                 WADEMEDSPPDEVMSDLQDHIRGTSPGVRKADGTRQRESTALAHEAEDDSD
FT                 FF"
FT   CDS           join(1559..3094,3031..4878,4869..5246)
FT                 /product="Tx1-3_LMi_2p"
FT                 /translation="MTPLQAYRIATINLNKISSTFNLRNLQDFLYAAEIDI
FT                 ALLQEVAELSLEHITGYNALINPGNGSEHGTAIMTREGIMVSNVEKLANSR
FT                 GIAATFNNTRIINVYAPSGTGKKRQRAEFFKGDIVPLFASQTEHVIFGGDF
FT                 NCVLSRKDQTPNFNTSMELQNITRELNLVDTWELQHGDAPGFTYVTNHSAS
FT                 RLDRIYTTSNLQQHILQAERWPTVFSDHSAYICTINLEKQGTYRARGLWKL
FT                 NTSHLSDAGCHAIFRNTWAECERKFPRYDSAFKWWIKCAKPSLIKAMKQYS
FT                 REKYSWQKRTVEFYFQCLRDLYKEDAAVTDNFAQIKRIKATILTIKRKQLA
FT                 GCQVRTRLQNATHEETTSMYHVIQEQKKRNRKILTALKTTDGRCVTTQSEI
FT                 REEIYNHFSLLLADKPVDETAQLALLARSSTRLTTAEAEELATEITEEEVT
FT                 DAIRNSPKNKSPGPDGLPAEFYDTFRQQLVSKLTLVCNDIMTHKNDTFKEF
FT                 CEGIVVLAPKHQEGRLHLQGILRRNRGVSPKTPGGKTVDNLRPITLLNSDY
FT                 KIFARILMRRFNSVIDKVTGAYQTSVGKDRTITQTLNAYRDIIATAEACDI
FT                 QSAIVSLDFEKAFDRVSHSYLLRTMETMHFPKKIIDTVHTLLTNGTSRISV
FT                 NGQLSRPITIMSSVRQGCPLSMIFFAIALEPLLISLTQTLPGLQIHGHKII
FT                 CQAYADDVSFLVTDAEQIARAFQIISTYEAASGAKLNRNKSGIMNVGRGVD
FT                 LTTDAPIKSIATLNCLGIEFTCNIRRTAATNYRKLLAKIRAAIQQHSLRNL
FT                 NIIQKVELANIYITAKVNYVAQVLPLPKVIAQKILAALGHFVTRGQIFKVK
FT                 YDTLTLPTEKGGLHLTDIYLKAKALFVRNMYKQWRRSPDTLTAHLLNEITP
FT                 ATMEPPVDVHHIPNALWHLRYFFLELSYIMMNTPEKDRYRVKAIYNNMMEC
FT                 KQGNVVEHKYKGYNWRNIWQNIHDPHLPSNVRSTWYMAVNRKIPTNAKLQA
FT                 IHLADTPNCSNCNQVDTEEHRFTCEPVKDIWQLCTDKLACILRTSPRTITP
FT                 TRLLNPEEVPYPNAKRKAVNWIKGQTVHYVFSESEKSKNDYWLTLQTEHQK
FT                 LQRFENYREKYACFLLRTLININLNEKKNNLCRMFCLLLLLFQKLNYNNVL
FT                 HKFLGSVRTEVTVTSTSKLNEKTTQHHANNNEDIKTINHGNSAIVNLFEKT
FT                 NFEAASTPSRAAEHPRKKQRRYIYFRFLEWGFFFFFLSNNNYGS"
XX
SQ   Sequence 5441 BP; 1812 A; 1248 C; 1233 G; 1146 T; 2 other;
     cgcattccgc cggcggcggc cggctgtgcg gaagtgtgga gcgccgtgtg tttacatcgt        60
     cgctgcgggc ggccgagcgc tgtgaggtga gtgcgcgctt cagcgttgtt attgtagagg       120
     aatgctaacc gaaagaaatg gataatcaac cagaacgaat agatactttg aaactgagtt       180
     tcgacccgaa tttaccgaga ccgaaatctt tcgaagttga attatttctg cgagatgtta       240
     tgaaaattac catagatgac atcattggca tccatttgtc aattgtcagt agcacggtgt       300
     acctcaagtt agtgagcccg acgaaatgcg agcagataat agaatcctgt agtggtacat       360
     taaagtttaa acattcggat ggtcatgttg gtgaagtacg agtgtcatat gctggttttg       420
     gagtacgaac agtcagaata ttcgaacttc cctttgaagt aactgccgag caaattaatg       480
     cgaagctgaa agattacggg aacgtcataa gtaacgtcgc cgaaaaatgg tctgggcagc       540
     acatattccc ggtactaaat ggtgtacgcc aggtgagaat tgaaatggta aaacacattc       600
     cgtcttacat tacggtatgc ggttatagag ctattgtgat ctatgatggc caaccgcgaa       660
     cttgctcggc gtgcggttcc acaacgcacg tccgcgccca gtgtgtacag cggcgcgtgg       720
     cgcaaatacc gacaggcgag cgagagaggc agggcccaat gtctacgctg ccgataacct       780
     tcgcagctgc cgcccgagta aacaccgcac cggagcccaa tttagatgtc acactagagt       840
     cttacatgga gcaaaaagaa caacacacac ccatggaggc ggaaacttca ccagtcactc       900
     cgcaaactgc cccgcaggaa gtggaggaga gtagacaagt gmgccgagaa caaggggacg       960
     gactttccga ggcagtgcac gttgctgact gcacgcccat gaacgaacaa tctgggttcg      1020
     aagagacaac gaacggcagg ccgagactac ctctccgaag aaacataaca aaagacggaa      1080
     ggcacacgaa ggagcagacg gaaacgcgca aatactgcgc gaaaaggcaa aacagatacg      1140
     ccaaaaatcg gaaacaactc ggatcattcc ggcaattctc aggccctaaa aaagtctcgg      1200
     actgaggacc cggagtctgt ccaggggaaa cagacctcaa cagtacaaac gaagatggac      1260
     actgtggacc aagatgacaa aagtaaacac ccaacagaaa gagaaccagc atcagggaac      1320
     cgcaacccta caggcamttg ggcagacgaa atggaagaca gtcctccaga tgaagtaatg      1380
     tctgatctac aggaccatat aagagggacc tcaccaggag tccggaaggc agacggcacc      1440
     cggcaacggg agtccacggc ccttgctcat gaagcagagg acgactcgga ctttttctaa      1500
     atggtgcact actgtattca cccggaagga gcatagcacc taacacacct ctggcaacat      1560
     gacacctctg caggcgtacc gcattgccac gataaatctc aacaagatca gcagcacatt      1620
     taacttgaga aatcttcaag attttctata cgcggctgag atagacatcg cattgttgca      1680
     agaagttgca gaacttagcc tagaacatat aacaggctac aatgcgctaa ttaatcccgg      1740
     taatggcagt gaacacggga ctgccatcat gaccagggaa ggaattatgg tcagtaacgt      1800
     ggagaaacta gcaaatagca gaggtattgc cgctacattc aataacacga ggattattaa      1860
     tgtttatgca ccttccggaa caggaaaaaa gcggcagcgg gcagagttct ttaaaggcga      1920
     catagtgcct ctcttcgcat cgcagactga acacgtaatt tttggaggcg attttaactg      1980
     cgtccttagc cgaaaagacc agactcccaa tttcaatacg tccatggaac ttcagaatat      2040
     aaccagggaa ctcaatctgg tagacacatg ggagttgcaa catggagatg cgcccggttt      2100
     cacctatgtg accaatcatt cagccagtcg cctcgatagg atctatacaa catcgaacct      2160
     gcaacaacac attctgcaag cagagaggtg gccgacggtg ttttcagacc actccgcgta      2220
     catctgcacc ataaatttag aaaaacaagg aacatataga gcaagaggat tgtggaaact      2280
     gaacacatca cacctgtcag atgcagggtg tcatgccata tttcgcaata catgggcgga      2340
     atgtgaaaga aagtttccga gatacgattc ggcatttaaa tggtggataa aatgtgcaaa      2400
     accttcatta ataaaagcta tgaaacagta ctcccgcgag aaatactcat ggcagaaaag      2460
     aaccgtggaa ttttacttcc agtgcttgag agatttatat aaagaggatg cagcagttac      2520
     ggacaacttc gcacagatca aaagaatcaa ggccacgatc ttaacaatta aacggaaaca      2580
     actggcaggt tgccaagtta gaactcgcct acaaaatgcg acacacgaag agacgacgtc      2640
     aatgtatcac gtgatacaag aacaaaagaa acgaaatagg aaaatattga ccgcactaaa      2700
     aactacagac ggaaggtgtg tgaccaccca atctgaaata cgagaggaaa tttacaacca      2760
     tttttctcta ctgctagcag acaaaccagt ggacgaaacg gcacaactcg ctcttctggc      2820
     tcgttcgtcg acgagattaa ctactgcaga agctgaagag ctggcgacag agatcaccga      2880
     ggaagaagta acagatgcca tacgaaacag cccaaaaaac aaatcgcccg gccccgacgg      2940
     actgccagct gagttctacg acaccttcag acaacagctg gttagtaagt tgactctcgt      3000
     atgcaatgac atcatgactc acaagaatga caccttcaag gaattctgcg aaggaatcgt      3060
     ggtgttagcc ccaaaacacc aggagggaag actgtagaca atctcaggcc aataacctta      3120
     ctaaatagtg actataaaat cttcgcgcgc atcctcatgc gacggtttaa ttcggtgatt      3180
     gacaaggtta caggtgccta tcagacgagt gtcggcaagg acaggacaat aacccagacg      3240
     ttaaatgcat accgagacat catagcgaca gctgaagcat gcgacatcca aagcgccata      3300
     gtgtcgcttg atttcgaaaa ggcatttgat agagtgagcc actcctatct cttgcggacc      3360
     atggagacaa tgcacttccc gaagaaaata attgacacag tgcatacact tctgacgaat      3420
     ggcacatcaa gaatcagtgt gaatgggcaa ttaagtagac cgatcaccat catgagctca      3480
     gttcggcagg gttgccctct gtcgatgatt ttcttcgcaa tagccctcga acctctcttg      3540
     atctccctga ctcaaacctt gccaggattg caaatacacg gtcacaaaat catatgccag      3600
     gcatatgcgg atgacgtgag cttcctggtc acggacgccg agcagatagc aagagctttc      3660
     cagattatat caacctacga agccgcgtct ggagcgaaat taaaccgaaa taaatctggg      3720
     attatgaacg ttggtcgagg agtagacctt acaactgacg caccaatcaa aagcatagca      3780
     acacttaact gtcttggcat agaattcacg tgtaacatcc gccgcacggc agccactaat      3840
     tataggaaac tattggcaaa aatacgggct gcaatacagc aacatagttt gaggaactta      3900
     aacatcattc agaaagtgga gctagcaaac atctatatca cagcgaaagt aaactacgta      3960
     gctcaggtcc tcccactgcc caaggtcata gctcaaaaaa tattagcagc cctcggtcac      4020
     tttgtcacta gaggccaaat attcaaagta aaatatgaca cactgacgtt accaacagaa      4080
     aaaggaggcc ttcatctcac agacatctac ctcaaagcga aagccctttt cgtcagaaat      4140
     atgtacaaac aatggcgacg atcaccggat actctcacgg ctcacctctt gaatgaaata      4200
     acaccggcca ctatggaacc acctgtcgac gtccatcaca taccgaacgc gctctggcat      4260
     ctgagatatt tctttttaga actcagttat attatgatga atactcctga gaaagatcga      4320
     tacagggtaa aagcaatcta taacaatatg atggaatgca aacagggtaa cgtcgtagaa      4380
     cacaaatata aaggatataa ctggcgtaac atctggcaga atatacatga cccacactta      4440
     ccatccaatg tgcggtccac gtggtatatg gcggtaaata gaaaaatacc gaccaatgca      4500
     aagttacagg cgattcatct ggcagacaca ccaaattgca gcaactgcaa tcaagttgat      4560
     acggaggaac accgatttac atgtgagccc gtcaaagaca tatggcaact ctgcacggac      4620
     aaactcgcgt gtatattacg cacgtcaccc agaacaatca caccaacacg actactcaac      4680
     ccagaagaag ttccctatcc taacgccaag agaaaggcag tcaactggat aaagggacag      4740
     acagtacact atgttttctc agaaagcgaa aaaagtaaaa acgactattg gttaacacta      4800
     cagaccgaac atcagaagtt acaacgattt gaaaattacc gagaaaaata tgcatgtttt      4860
     ttacttagaa cattaattta aacgaaaaaa aaaacaacct ttgcagaatg ttttgtttgc      4920
     ttcttttatt gtttcaaaaa ctaaattata acaacgtttt acacaaattc ctggggtcgg      4980
     taagaacgga ggtaacggtg acaagcactt cgaagttaaa tgagaagacg actcagcatc      5040
     acgctaacaa caacgaagat ataaaaacga taaatcacgg taactctgcg atagtaaatc      5100
     ttttcgagaa gacgaacttt gaagcagcta gtacaccgag ccgtgcagct gaacacccaa      5160
     ggaaaaaaca gaggaggtac atttattttc gttttctaga atggggtttc tttttttttt      5220
     tcctttcaaa caacaattat ggaagctaac cgctgatgac ataattggca aggaaacaaa      5280
     agtggtcaca tcacattgaa gcgggcagct accgcagaag aagcagttta attttacctc      5340
     tcaggaacta ttcagtttaa aggcaatgaa gccgggccga gaaggcaaca attggcgaga      5400
     gcaaggacgt taaggggagg aaggagacca aaaataaaaa a                          5441
//
ID   Tx1-4_AAe   repbase;    DNA;    INV; 5066 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5066
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1460-1460 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 13 sequences with >98%
CC   identity. It is positioned at the deepest branch of the Tx1
CC   clade, and does not show sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           158..1342
FT                 /product="Tx1-4_AAe_1p"
FT                 /translation="MADTELRANSLRIRFERGVPEPADSEIFKFMKSKMGL
FT                 NSEKLLSMYKDKSETSIIVKFKKEEDMRNTLSDLPGTMVFEYSKYESTEVK
FT                 LSSANAIVRYIRLFNLPPEVDDREISVVMQRYGKVVRLVREKYGEETGFPI
FT                 WTSVRGVYVELKEGIEVPATVFIRNLRARVSYEGIINKCYLCGSKDHFKAE
FT                 CPEKKSVNERLSNQQSSSYSGILRGGGKWLKQQVKTSSNEKDGMIKLGQGL
FT                 PKRSNTTQAQLDSCQDRDEGAAQRNEDNHIEDVQTSTVNQNELCVSETEHE
FT                 DNCGNVEQSVMDVADNAFIKVTGKRGRKHQKSAEKEGTSDSDESPSEKLHR
FT                 DPTTQAGVKVGALSESLDRITRSRSKQKKMSDDVSSAVAGCEPTVREKSND
FT                 D"
FT   CDS           1705..4962
FT                 /product="Tx1-4_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MNHVMRIASVNLNSSTNLVNKNLLKDFIFNNDLDVIF
FT                 LQEVCYSNFSFVPSHIPYINVNERESGTAVLIRNSFETSQPLFSLNGRITS
FT                 IVIQNINFVNVYAFSGSNRKKERDELFLNDLTTHLAKANVSTNIVGGDFNC
FT                 IINSSDCLGDSKSYCVGLRQLIEAFGWKDVAWELKKNQFTFHRANSASRLD
FT                 RFYVPQNFISNILDFKTEPVVFSDHCGVVMKIKVDQTMIVSRGRGFWKINS
FT                 TVLKDDRVSELFAEACDSWKLRQVYDLNKNKWWNEVFKIKCKQFYKSKSWE
FT                 LVSRITNEKQYFYGKMKEYMEKINRGDDTYLDIKVIKSRIMEIETERLNHL
FT                 GNTFSIQNLLQGEIINVFQIAAQIKRQERNNILKLEENNVIITDSIQLRKH
FT                 VYDYYSNQFKKETVVSNQREIEDSLNHLTNCLDDEDRAQLVSPISLEELKD
FT                 ALELAKKKKSPGPDGLTYEFYLQNFEVIKYDMLEIFNAYLSGTFLPPKGFS
FT                 DGVITLVPKDHRKKLSLDNYRPISMLNCDYKIFTKILAERIQSKMHKLLGT
FT                 GQTACLQKTSCIDNLKNLRRVLTKSCENKRFKACLVSIDLNKAFDRVDHEY
FT                 LWNVLEKFGFPPTLINCLKNLYDIAFSRVLVNGFLTDAFRITRSVRQGCPM
FT                 SMILFVLYLEPLIRKISESLQGFWVYDKFIKVIVFADDFNVIVRSEVEFDL
FT                 LLTIFECYSRYAKIKINFEKSSYMRLNKAMIGPQRIKEAENMKILGVTFYK
FT                 SWYLTVVANYDSVISHIKSLLQKHKIRNMNLYERCMVLNTFILSKLWYIAQ
FT                 VFPPLNRHIAEIRKICGNFIWNGLIFRVERNQLYLDYFKGGLRLIDPEAKM
FT                 KALFIKNLLYNEDMNGDFLEENYLLQLRTPQRITKNAREWIANAIEVKSRP
FT                 QLNSTKLLYDYFVGMNNSVPKIEEKIDIDWPTLWENLNHNFISLNDRSKVF
FT                 CFVNNLIATGEKLYAYNVRKAAVCDKCGGVDNITHRLKVCPNAKIVWQWCS
FT                 QIIRTRMGCNVDDLEEFLSQTICLRSQKQKAALWLTLRVISFNLAGSVPNL
FT                 FVFKKQLRELRWNNRKLFVKHFGNNLNIC"
XX
SQ   Sequence 5066 BP; 1771 A; 720 C; 1119 G; 1456 T; 0 other;
     cagttcgtgt ttggatttcg tgccgtgcag acgtataata gagagtacga cagaaaaagt        60
     tctgatttgt gagcgcccgg atctcagcaa ggctgattcc aaaaaaaaaa gtgaaagcgt       120
     tagtttttga aagaagaagt gaggagtagt gaagaaaatg gctgatacag agttgagagc       180
     gaattctctg cgcattcgtt tcgaacgcgg ggtgccggag ccggcggata gtgagatttt       240
     caaattcatg aaatcgaaga tgggtctcaa cagcgaaaag ttgctttcga tgtacaagga       300
     caagagtgaa acgtcgatta tcgtcaagtt caaaaaggag gaagatatgc gaaacacttt       360
     atcagatcta ccgggaacga tggtttttga gtatagcaaa tatgagagta cggaggttaa       420
     attgtcatcg gcaaatgcta tcgtgcgata cataagactg ttcaatttgc ctccagaggt       480
     cgatgatcgc gaaatttcag tagtgatgca acgttatgga aaagttgtgc ggttagtgcg       540
     ggaaaagtat ggagaagaaa cggggttccc aatatggact tcggttcgtg gtgtatatgt       600
     ggagttgaag gagggtattg aagtgccggc aacggttttc atcaggaatc ttcgcgcgag       660
     agtttcctat gagggcataa tcaacaagtg ctatttatgt gggagtaaag atcatttcaa       720
     agcggagtgt ccggagaaaa agtcggttaa cgagcgattg agcaatcagc aatcatcgtc       780
     gtacagcgga attttgaggg gtggtggaaa atggttgaaa caacaagtga aaacaagcag       840
     caatgaaaaa gacggaatga tcaaactcgg tcaaggtctt ccaaagcgat ccaatacaac       900
     tcaagcacaa ttggattcgt gtcaggacag ggatgaaggg gcagcgcagc gaaacgagga       960
     taaccatatt gaggacgtcc aaacatctac agtgaaccag aacgagctct gcgtaagcga      1020
     aacagagcac gaggacaact gtggcaacgt ggaacaaagc gttatggatg tagcggataa      1080
     tgccttcatc aaggtcaccg gtaaaagagg acggaaacat cagaagtcgg cagaaaaaga      1140
     aggaacttcg gattcggatg agtcaccatc cgaaaagctg catcgtgacc cgacgactca      1200
     agcaggggtt aaggtaggtg cgttgagtga atcgctcgat cgtataactc gtagcagatc      1260
     aaaacagaaa aaaatgagtg acgatgtgag tagcgctgtt gcaggatgtg aaccaacagt      1320
     gagggaaaaa tcaaacgatg attagaacaa agttaattag caagagaata gttgtatcta      1380
     cgatacatag gaatatttgt gagttccggt atgagtatgg atgttttatg ggagagtttt      1440
     atattgagca acgatagaga ttatggatgt attgatatgc agaaatgtag agttattgtt      1500
     ttgcagattc gcaattagca gtttagtaga taagtagatt ggtagattta ttagacatga      1560
     agatttttta atttgtacat ttgtagactt gttgaattgt agatttgttg atttgtagat      1620
     ttgtagattt gtaaatttga agatttgttg atttgtaatt gataattttg tagattttca      1680
     aaccttttca aaaaataatt caagatgaat catgttatga gaatagcaag tgttaattta      1740
     aatagcagta cgaacttagt caacaaaaac ctgttgaagg atttcatttt taacaatgat      1800
     ttagatgtaa tatttttgca agaagtctgt tattcaaatt tttcgtttgt tccatcacat      1860
     atcccgtata tcaatgtaaa tgagcgcgaa tccggaactg ctgttttgat acggaattca      1920
     ttcgagacaa gtcaaccttt attcagtttg aatggtagaa taacttcaat cgtgattcag      1980
     aacataaatt ttgtgaacgt atatgcattt tcgggatcta accgcaaaaa agagagggat      2040
     gagttgttcc tgaatgatct gacgacacat ctagcgaagg caaatgtatc tacgaacatt      2100
     gtgggaggag atttcaactg tatcatcaac agttctgatt gcttgggaga ttctaaaagc      2160
     tactgtgtgg gtctgcgaca attaattgag gcatttggat ggaaagatgt agcgtgggaa      2220
     ttgaaaaaga atcagtttac ttttcataga gcgaactctg cgtcccgatt ggaccgtttc      2280
     tatgtaccac aaaacttcat tagtaacatt cttgatttca aaacagagcc ggttgttttt      2340
     tctgatcatt gcggggtagt catgaaaata aaagtagatc aaacgatgat agttagccga      2400
     ggacgaggat tttggaaaat aaattcaact gttctaaaag atgatagagt ttctgaacta      2460
     tttgcagagg cttgcgattc atggaagttg aggcaagtgt acgatttaaa taaaaacaaa      2520
     tggtggaatg aagtattcaa aattaaatgt aaacagtttt acaaatcaaa aagttgggaa      2580
     ttggtaagta ggataacaaa cgaaaaacaa tatttttatg gtaaaatgaa agagtatatg      2640
     gaaaaaataa ataggggtga tgatacatat ttggatatta aagtgattaa atcaaggata      2700
     atggaaatcg aaactgaaag actgaaccat ttggggaaca ctttcagtat ccaaaacctg      2760
     cttcaaggtg aaataatcaa cgtttttcag attgctgccc agattaagcg acaagaaaga      2820
     aataacattt taaaactcga agaaaataat gtgataatta ctgattcaat acagctcagg      2880
     aaacacgttt acgattacta ttcaaatcaa tttaaaaagg aaactgttgt ttcaaaccag      2940
     agagagattg aagattcttt gaatcatcta acgaattgtt tggatgatga ggatagagca      3000
     cagttggtat cacctataag tttagaagag ttgaaagatg ctttagagtt agccaagaag      3060
     aaaaaatccc ccggtccaga tggactaacc tatgagtttt atttgcaaaa ctttgaggtt      3120
     ataaagtatg atatgttaga aatcttcaac gcttatctct cgggaacctt tttaccaccg      3180
     aaaggcttct cagatggagt gatcacgctg gtaccgaaag atcacaggaa aaaattatcc      3240
     ttggataact atcgaccgat ttccatgttg aactgcgact ataaaatatt tacgaaaatt      3300
     ctagcagaaa ggattcagag caagatgcat aagttactag gaaccggtca aacagcgtgc      3360
     ctccagaaga catcttgtat agataaccta aaaaatttga gaagagttct tacgaaatcc      3420
     tgcgaaaata aacggttcaa agcatgtttg gtgagcattg acttgaacaa agcatttgat      3480
     agagtagacc atgaatactt atggaatgta ttagagaaat ttgggtttcc tccaacacta      3540
     ataaattgct taaaaaatct atatgatatt gctttctctc gggttttagt aaacggattt      3600
     cttacggacg cctttaggat cacaagatcg gttagacagg gctgtcctat gagtatgatt      3660
     ttattcgttc tgtatttaga gccgttgatt aggaaaattt cagaaagctt acaaggattt      3720
     tgggtgtatg acaagttcat taaagttatt gtctttgctg atgatttcaa cgttatagtg      3780
     cggagcgaag tagaatttga cttactgtta accatttttg agtgctactc aaggtatgca      3840
     aagatcaaaa taaattttga gaagtcatca tatatgcgtt tgaataaggc tatgatagga      3900
     ccacaaagaa taaaagaagc ggaaaatatg aaaattctag gagttacatt ctataaaagc      3960
     tggtatctca cagtagttgc aaattatgat tcggtaataa gtcatataaa atcactcttg      4020
     cagaaacata aaataagaaa catgaacctt tatgaaagat gtatggtttt aaataccttc      4080
     atcttatcaa agctttggta tattgctcag gtttttccgc cactcaatcg acatattgct      4140
     gaaattagga aaatttgtgg aaactttatc tggaatggtt tgatatttag agtggaaagg      4200
     aatcaacttt atcttgatta tttcaaggga ggattaagat taattgatcc cgaggcaaaa      4260
     atgaaagcgc ttttcataaa aaatttactc tataatgaag acatgaatgg agacttctta      4320
     gaggaaaact atttacttca attaagaaca cctcaaagaa taacgaaaaa tgctcgagaa      4380
     tggatagcaa acgctattga agttaaatct agacctcagt taaattcaac aaagttatta      4440
     tacgactatt ttgttggtat gaacaattct gtaccaaaaa ttgaagaaaa aatcgatatt      4500
     gattggccga cattatggga aaatttaaat cacaatttta tttctttgaa tgatcgttcc      4560
     aaagtgttct gttttgtaaa caatttgata gctacaggag aaaaactcta tgcctacaat      4620
     gttcgtaaag cagcagtttg tgataaatgt ggaggagtag ataatataac tcacaggctt      4680
     aaggtttgtc caaatgccaa aattgtatgg caatggtgta gtcagattat tcggacacga      4740
     atgggttgta acgtagatga tttagaagag tttctttcac aaacgatatg tttgcgatca      4800
     caaaaacaga aagctgcatt atggttgact ttacgcgtga tttcgttcaa tttagcagga      4860
     tccgttccta atttgtttgt ttttaaaaag caattaagag agctaagatg gaacaatcga      4920
     aaactttttg taaaacactt tggaaataat ttgaatatat gttgaaaagt acatagaaat      4980
     aagatttaga taaggaaaat gaacatgtaa tccaagtatg aactgtaccc ttttctaata      5040
     tcaataaaaa aaaaaaaaaa aaaaaa                                           5066
//
ID   Tx1-4_CQ    repbase;    DNA;    INV; 4997 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-4_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4997
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 636-636 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 5 sequences with >96%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           143..1339
FT                 /product="Tx1-4_CQ_1p"
FT                 /translation="METRKNTLKLQFVTSAKVPSHLDVLKFMAKGVKIPAA
FT                 DVHSVYKDENDQKFYVKFIDETSYNRFCNTVEDQYWFHYEDGSRTPVQLEL
FT                 ASRQFKYVRLFNLPPETEEKEIAAALAKFGKIRQHVREKYPADLGYHVFSG
FT                 IRGVYMEVEKEIPANLYIAHFRARVYYEGLKNKCFFCKAEGHMKVDCPKLA
FT                 SLRSSAETGGQPSYSSVTANLKIATGSAKETASPLLNMTLIPVPAQRTKTK
FT                 EQAQQEEAGVVPSTSTVQPPVQANPDLALPQAKPAEGQGEEQKEASPIDAI
FT                 VANDPSDXSAEQTDAETDDETEKCNDGQGEAGGSASDAMIVDGDQQNANDT
FT                 KQEEAIDREEWRLQQKQQLKRPIAESLSTDSNAGQGKGLLKKKPRGGKGKR
FT                 GSKGK"
FT   CDS           1572..4823
FT                 /product="Tx1-4_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MAYIRKCSTVNLNAISSTLKLSLLKDYVWNNDLDFVF
FT                 LQEVATENFRFLPSHNALINISSDGKGTGVLIRNSIEFSNVCMNPNGRIIS
FT                 VVIDDINFINIYAHSGSKYKKERDLLFSEDLLIHLSEHKENVILGDFNCII
FT                 DKNDSNGLNKNISNGLKTLVTSLGLIDIELKKNNTRTFTFMRCNSKSRLDR
FT                 VYSSIDFLEKVRSLETVPVPFSDHHSIIIKFEINRQFMFFHGRGYWKMNSS
FT                 LLYDLDILNKFKNLYSNLKQRNSFQNLSYWWNNDVKTSIKKFFKTENFITN
FT                 QQSHREKSFYYNCLKEIIEKQRANIDCSQELALVKSKLIELEQQRLNKIKY
FT                 KIKPESLQNDEKLSLYQITSFINRNTSSKQLKLRIDGRETSDYNLLRNEIF
FT                 NNFSQKFKKQPVNNDNTDEILNTLTAHLDDHEKHNLAKPIEMSELETALRF
FT                 SSKRSSPGPDGISYEFYTHCFDIIKNDLLKLFNTYYINEEYPPGLFTSGII
FT                 TLIPKKGDKLDLQNKRPISMLNTDYKLFTKILWNRIQPILEKLIGPGQAAC
FT                 VKDSSCIHNLKLLRNVLIKANKSKKFKGAILSLDLEKAFDRVDHEFLWKIL
FT                 KKFNFPDNFISCLRKLYKNATSSVLFNGFLTSPFAILSSVRQGCPLSMVLF
FT                 ILYLEPLIRLIDRNLKGVLIDNNFVKVVAFADDINIFIRDDSEFDMTLQLI
FT                 HYYSVYSKIKLNSKKSQFLRFNSCRLGPQQVKEVEEMKILGITFKKDYVET
FT                 IEKNYKDLIQSIIVSLILQQSRRLNLFQKVTILNTFILSKLWYVAQIFPPE
FT                 NKHICTLRSICGKFIWKGLFYKVERKELYLPVLEGGLSLIDVEAKCKALFV
FT                 KNILFSRSNDVVNIDKFMLEQIHTKTITRNTREWLKDADLFMNETHLNTCK
FT                 KXYDTILSRMKITVKKRIELPNKNWQNLFENTNKNFLTSDSKSVLFMILRD
FT                 IIPCNAKMFRHGVRGVESPNCDCCGVPDSVEHRIKNCCSSXKVWSWLNEIL
FT                 KTRFKLTLCDADELLSCNISETNSKEKAALWLTIESMCYCLQNSKSGSIEE
FT                 LKSHIRESRWNKRELFKKHFKHFLNLW"
XX
SQ   Sequence 4997 BP; 1716 A; 808 C; 989 G; 1480 T; 4 other;
     cagttcgctt ttggacttcg gacagtcaag tcaagttctc gaagtgcgcg cgaagaagct        60
     gtaaacgttt tgtcgcactc tgtgcgaccc acagctatct ctattttttt caagcggaat       120
     ctaatctacg gatagataaa aaatggaaac ccgaaagaac acgttgaagc tgcagtttgt       180
     gaccagtgcc aaagttccgt cgcatctaga tgtgctaaag tttatggcca agggagtgaa       240
     aattccagca gccgacgtcc attccgttta caaggacgaa aatgaccaga aattttacgt       300
     gaagttcatc gatgaaacca gctacaaccg attctgtaac accgtggaag accagtactg       360
     gttccattac gaggatggtt cgaggacacc ggttcaactc gagttggcaa gccggcagtt       420
     caagtatgtc cgtttgttca acttgccacc ggagacggag gagaaagaaa tcgcagcagc       480
     gttggcgaaa tttgggaaaa tccgacagca cgtgcgggaa aagtaccccg cggacctagg       540
     ctaccacgtg ttcagcggca tccgcggcgt gtacatggag gtggaaaagg agataccggc       600
     caacttgtac atcgctcatt tccgtgcccg ggtgtattac gaaggactga agaataaatg       660
     cttcttctgc aaagcagaag ggcacatgaa ggtcgattgc cccaagctgg ccagtctcag       720
     gagcagtgct gaaactggtg gtcagccttc gtacagcagc gttacagcga atctgaagat       780
     tgccaccggc agtgcgaaag agacagcaag cccgttactc aacatgacct tgatcccagt       840
     tccagctcaa cgcaccaaga ccaaagaaca agctcagcaa gaagaagccg gcgtggtacc       900
     aagtacgagc actgtgcagc cgccagtaca agcgaacccg gatctggcgt tgcctcaagc       960
     gaaaccagcg gagggacaag gagaggagca gaaggaagct tcgccgatcg acgcgatcgt      1020
     cgcgaacgac ccgagcgacc mgagcgccga gcagaccgac gccgaaacgg atgacgaaac      1080
     cgagaagtgc aacgatgggc aaggcgaggc ggggggatcc gccagcgacg cgatgatcgt      1140
     cgacggagat cagcagaacg cgaatgatac gaagcaggag gaggcgatag atcgggagga      1200
     gtggagactt caacagaagc agcagttgaa acggccgatt gcggaatcgc tgtcgactga      1260
     ttcgaacgca gggcaaggta agggactttt gaaaaagaaa ccacgtggcg gtaagggaaa      1320
     gcgaggtagt aagggcaagt agaaaccaat tgaagttttt ttttctcttt tctttctaat      1380
     tttcttctaa attttatttc taattttatt ttattattta tttattttat tttgattcca      1440
     tttttattca attttttttt gttctcaaac tttagtttca agaaatgttt ttttttaata      1500
     actcgatatg gaattgttga atattatatt cgtgactttg gctttgattt ctttgatatt      1560
     ctaaaggtat aatggcatac atacgcaagt gttcgacagt taatcttaat gcaatcagct      1620
     caactttaaa actctcgtta ctaaaggact atgtgtggaa caacgattta gattttgtgt      1680
     ttttgcagga agttgcaacc gaaaattttc gttttttacc gtctcataat gctttaatca      1740
     acattagcag tgatggaaaa ggaactggtg ttttgataag gaactctatt gaattttcaa      1800
     acgtttgcat gaatcctaat ggaagaatta tctcagttgt aattgatgac ataaatttca      1860
     ttaatattta tgcacattct ggttcaaaat ataaaaaaga aagagatttg cttttttctg      1920
     aagatctgct tatccatttg tcagaacata aggaaaacgt tattttaggt gattttaact      1980
     gcataattga taaaaatgat tcgaacggat tgaataaaaa tataagtaac ggattgaaaa      2040
     ctttagtaac atcattagga ctgattgata ttgaattaaa gaaaaataac acaagaactt      2100
     tcacttttat gagatgtaac tcaaaatcca ggctggatag agtgtacagc tcaattgatt      2160
     ttttagaaaa agttagatct ttagaaacgg tacccgtacc gttttcggat catcatagta      2220
     ttattataaa atttgaaata aatcgacagt ttatgttttt tcacggaaga ggttattgga      2280
     agatgaattc atcactttta tatgatctag acattttaaa taaattcaaa aacttgtata      2340
     gtaatttaaa acaaagaaat tcgttccaaa acttaagtta ttggtggaac aatgatgtga      2400
     aaaccagcat caaaaaattt ttcaagacgg aaaactttat aaccaaccag cagtcgcacc      2460
     gtgaaaaaag tttttattac aactgtctaa aagagattat tgaaaaacaa agagctaata      2520
     ttgattgctc tcaggaatta gcgttagtca aatcaaagtt aattgaacta gaacaacaaa      2580
     gattgaataa aatcaaatat aaaatcaaac cagaatcact tcaaaatgac gagaaactat      2640
     cactttatca aataacatct tttatcaatc gcaatacatc ctccaagcaa ttgaaacttc      2700
     gaattgacgg cagagaaaca tcagattata acttacttag aaatgaaata ttcaataatt      2760
     tttctcagaa gttcaaaaaa cagccagtaa ataacgataa caccgatgaa attttaaaca      2820
     ctttaactgc gcatttagat gatcacgaaa aacataattt agctaaaccg atagaaatgt      2880
     ctgaattaga aactgcttta agattttcat ccaaacgttc ctctccagga ccagacggaa      2940
     ttagttatga gttttatact cattgttttg atattattaa aaatgactta ctgaaattat      3000
     ttaacactta ttacatcaac gaagagtacc ctccaggatt atttacgtcg ggaattataa      3060
     cattaattcc taagaaaggt gataaattag acttgcaaaa taaaagacca attagtatgc      3120
     ttaacacaga ttataaatta ttcacaaaaa ttctatggaa tcgtatacaa cccattctag      3180
     aaaagttaat tggaccaggc caagcagcat gtgttaaaga tagttcttgt attcataatt      3240
     taaaattatt gagaaatgtt ttgataaaag caaataaatc gaaaaagttt aaaggagcga      3300
     ttttaagtct tgatttggaa aaagcctttg atcgtgttga tcatgagttc ctgtggaaaa      3360
     ttttgaaaaa gttcaatttt cctgacaatt ttattagttg tttacgcaaa ctgtataaaa      3420
     acgcgacatc atccgtatta tttaatggtt tcctgacttc accctttgct attcttagtt      3480
     ctgtaaggca aggttgtccc cttagcatgg ttttatttat cttatattta gaaccactta      3540
     ttcgattaat tgatagaaat ttaaaaggtg ttttaattga taacaatttt gttaaagtag      3600
     tagcttttgc ggatgatata aacattttta taagagatga tagtgaattt gatatgactt      3660
     tacagttaat acactactac agtgtatatt ctaaaattaa attaaattct aagaaatcac      3720
     agtttttaag atttaacagc tgtcggttgg gtccccaaca agttaaagag gtggaagaaa      3780
     tgaaaatttt aggaataact tttaaaaagg actatgttga aaccatcgaa aaaaattata      3840
     aagatttgat tcaaagcatc attgtaagtt taattctaca acaatctcga cggttaaatt      3900
     tatttcaaaa agtaacaatt ttaaacactt ttattctttc gaagttgtgg tatgtagctc      3960
     agatttttcc accggaaaat aaacatattt gcacattacg atctatttgt ggaaaattca      4020
     tttggaaagg actgttttat aaagtagaaa ggaaggaact ctaccttcca gtattggagg      4080
     gaggtctatc gcttatagac gttgaagcaa aatgtaaagc tctttttgta aaaaatattt      4140
     tattttcgcg tagtaatgat gttgttaata tcgataaatt tatgctggag caaattcata      4200
     ctaaaactat cacaaggaat actagggaat ggttgaagga tgcagattta tttatgaatg      4260
     aaactcattt aaatacctgc aaaaaaatkt atgatacaat tttgtcaaga atgaaaataa      4320
     cagttaaaaa gcgaattgag ttaccgaata agaactggca aaaccttttt gaaaatacga      4380
     acaaaaattt tcttacatct gatagcaaat ctgttttatt catgattctc cgggacatta      4440
     ttccatgcaa cgctaaaatg tttcgacacg gtgtaagggg agttgaatct ccgaactgtg      4500
     actgctgcgg tgtgccagac agtgtggaac acagaattaa gaattgctgc tcctcgaasa      4560
     aagtttggtc ctggcttaac gaaattttga aaacaagatt caaattaact ttatgtgacg      4620
     ctgatgagct tttatcttgt aatataagcg aaacgaatag taaagaaaaa gcagcattgt      4680
     ggttgactat cgaatcgatg tgttattgtt tgcaaaatag taaaagcgga agtattgaag      4740
     aattgaaaag tcacattcgc gaatcgcggt ggaataaaag agaattgttt aaaaaacatt      4800
     tcaaacattt cttgaatcta tggtgaagag gttttgttgg aggattagga tttgttagga      4860
     ggttttgttt tttttttttc tttgctttct gtacagtaaa ttaaagtaaa gtgccacgtg      4920
     gttaggagtt ggaagtaaat tgtatttgta gtttgattag acgtcaawaa cgcttaaaaa      4980
     aaaaaaaaat aaaaaaa                                                     4997
//
ID   Tx1-4_FoCa  repbase;    DNA;    INV; 5055 BP.
XX
AC   .
XX
DT   13-NOV-2019 (Rel. 24.12, Created)
DT   13-NOV-2019 (Rel. 24.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Folsomia candida genome -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-4_FoCa.
XX
OS   Folsomia candida
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
OC   Collembola; Entomobryomorpha; Isotomoidea; Isotomidae;
OC   Proisotominae; Folsomia.
XX
RN   [1]
RP   1-5055
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Folsomia candida genome.";
RL   Repbase Reports 19(12), 2715-2715 (2019).
XX
DR   [1] (Consensus)
XX
CC   ~99.2% identical to consensus. No clear target preference.
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1096
FT                 /product="Tx1-4_FoCa_1p"
FT                 /translation="IWFKDQAAFDVIIKADTIKFGAASVKVYAYANPIRRV
FT                 IVRGVPPFLPDEILINSFAKYGEIRGQVSHQSIFGAGEEFAHIISFTRILN
FT                 LAIPKGIRVPDSINVKVSDKVYKLRVQIGAKKCFRCGKKNHVSANCTAQAK
FT                 KPLGQRSAPLLSIDPTINDSNIVSRKNDAPVDIGVRTSTSSFKRPRVNDSQ
FT                 DSSVDEVFESDGDSSQRSSSQSSRKKAKGRPKTISDWGYDKWNSVNLEIKS
FT                 VTKDRFILFLRSLRREDNNNIKXKYINLGQEIFMTTKVPKDIETMLVEVHS
FT                 SIPSSNKSLVTKYASLLSQIREFLESDPAEFKKCQALLDNNYRQMEWQSYC
FT                 RLNSIPLADQDGFKAFFFNIKW"
FT   CDS           1093..4632
FT                 /product="Tx1-4_FoCa_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVITIWTLNCQGLGNSVKKQALRSLIISFNPTIVCLQ
FT                 ETNLDPFRHGVINIQNYTPVFNECTTLGSGTAFYIHHKCSIISQNILFPGK
FT                 MSKIIIQYLSKTFMIMNVHFPFRRNDSEQFMHIIRKEIAAAPTFDGTFLLG
FT                 DWNFVVDLDRDRFGSSESRKGFAKEFQNFISSKCFVDAYRHLCPHGKDVTF
FT                 VSRMNGTSARLDRIYIHSSQIQNLVSQNIIPFMGDHLVFCVTLAMNNNKSK
FT                 CLWTCPISLFKNSDFIFTIGSILDKFLLSDFSLESYEKLKSKIIRVAMETD
FT                 LYSKMNIKRLVRSTYNKMTRTQNVVSSEIFKNFMDSVEGAICGEGVCSDVP
FT                 DRRIATARDGITVGEALTDLSTDERLEYVGSFFRDKFSHSSVDLSNLNDFM
FT                 DGMPKIACPEIFNHDFSEEEIFDSILKSPNGRAPGLDGLPFEFYKAFSSRF
FT                 SKILALVAEFSREEGTFPKSCRSSVATLIFKAGDPKTLKNYRTISLTNTDY
FT                 KIISSALKARLNPTLPSIVGPWQTCGVKGRSIFDNLTFMRDAFQSGELNGL
FT                 LFSLDQEAAYDRVNHEYLYQVLQNFGYPEKLIQYVKLLHTDFTLVVSVGSD
FT                 LTAPIATEVGLKQGDPSAGALYCIAIEPFLYNLNKKLRISGPSAWRRYPHI
FT                 YLSGYADDTNTFLGHENQISTVVSEYKKYSQFSNSKLNSSKSVILKLGVYN
FT                 LHRPVDFPVVSDGLKILGIYFGSDDYMAQNFTRLMAKFDSKLEFYTKKCAP
FT                 VSHFSRSKIVNTFLLPVFWYFFKVLDPPTEILNQICTKIENYIWYKSKRWV
FT                 ARSFLYLPLVNGGLGVRSPVAQIATFRLTFLQKVLGLCSDKYFLNESVNQV
FT                 TKILNGDNKLTKYYEQIMMVTQVLGVRLISCDRERLHSIHINSKFIFGGIS
FT                 HNYLRRCNISKIGDLLNETYLVGLELLPTATHRHVLAERQKHVQLVAMVTE
FT                 SENTQLAISSLFHSPTLVNLSKNTNYLHSLRSHKNIKCENLDSGFCSLSQW
FT                 ERLVATAVSNPEKDVVFKMWHGVGLTPSLALSMNFYDNNCCPYCNIERPKV
FT                 GHYLVCEHVTDLKQAVAKLLTKVKIHARDFEDAFLHGTKHAGANILIFYAY
FT                 YIIYQCFVHRLNNYSGSFNLISSYRHMLYGRIITEFHACNLNKSLISKFYD
FT                 KWDKFKIYEITNSKININLGF"
XX
SQ   Sequence 5055 BP; 1618 A; 862 C; 966 G; 1608 T; 1 other;
     gatttggttt aaagatcaag ctgcttttga tgttattatt aaggctgaca ctataaaatt        60
     tggtgcagcg agtgtcaaag tatatgcgta tgcaaatccc attcgtagag taattgttag       120
     gggagttcca cctttccttc cggacgaaat tttaataaat tctttcgcca aatatggtga       180
     aattcgtggt caagtttctc accaatctat ttttggggcc ggtgaggaat ttgcacacat       240
     aatctctttt acaagaattt tgaatttagc aattccgaaa ggtattcggg tcccagactc       300
     gattaatgta aaggttagtg acaaggtcta caaactcagg gtgcaaattg gggcaaaaaa       360
     atgcttccga tgtgggaaaa aaaatcacgt aagtgccaac tgcaccgccc aggctaagaa       420
     gcccctcggt cagagatcgg cacctttatt atcaattgac ccaacaatta atgactcaaa       480
     tatagtgtca cgcaaaaatg acgctcctgt agatattgga gtgaggactt caacatcctc       540
     cttcaaacgt ccacgagtca atgattcaca agattctagt gttgatgagg tatttgaaag       600
     tgacggtgac tcctctcaaa ggtcatcttc tcagtccagt aggaaaaagg ctaaaggaag       660
     acccaagaca attagtgatt ggggttatga taagtggaat agcgtaaatt tagaaattaa       720
     atctgtcaca aaggatcgat ttatattatt tttacgttct ctccggagag aagataataa       780
     taatatcaaa wgtaagtaca taaatcttgg tcaagaaatt tttatgacta caaaagtgcc       840
     taaggacatt gaaacgatgt tggttgaggt acatagctcg ataccaagta gtaacaagtc       900
     cttggttacc aagtacgcat cacttttgag tcagattagg gaatttttgg aatcagatcc       960
     agccgaattt aaaaaatgtc aagccttgct tgataataat tacaggcaaa tggagtggca      1020
     aagttattgt cgattaaatt ccatcccttt agcggatcag gatggtttta aggcattctt      1080
     ttttaatata aaatggtaat caccatctgg accttgaatt gtcaaggact aggcaattca      1140
     gttaaaaaac aagcccttag atcgctaatt atttcattta atccaacaat agtttgtctg      1200
     caggaaacaa atttagatcc cttccgtcat ggagtaatta atattcagaa ctatacccca      1260
     gttttcaatg agtgtaccac tttggggagt ggtacagcat tttatattca ccataaatgc      1320
     tccattataa gtcaaaatat actttttccc ggcaaaatga gcaaaattat aatacaatat      1380
     ttatccaaaa cttttatgat catgaatgtt cactttcctt tccgcagaaa cgattctgaa      1440
     caatttatgc acataataag aaaagagatc gctgccgctc ccacgtttga tggcaccttc      1500
     ctactcgggg attggaattt tgtagtagat ttagatagag acagatttgg tagcagcgaa      1560
     agtaggaaag ggtttgcaaa agaatttcaa aattttatta gttcgaaatg ttttgtagat      1620
     gcatatcgtc atttgtgccc ccatggtaaa gatgttactt ttgtgagccg aatgaatggt      1680
     acgtctgcta gactagacag aatctatata catagttccc aaattcaaaa cttagtcagt      1740
     cagaatatta ttccattcat gggcgaccac ctagtttttt gtgtaaccct ggcaatgaat      1800
     aataacaaga gtaaatgttt gtggacatgt ccaatttcac tttttaaaaa ttcagatttt      1860
     atttttacca ttggatcgat attagataaa tttttattgt cagatttttc attagaaagc      1920
     tacgaaaagc ttaaaagtaa aattattcgg gttgccatgg aaaccgattt atactctaaa      1980
     atgaatataa agagattagt tcgttcaacg tataataaaa tgactcgcac ccaaaatgta      2040
     gttagttcag agatatttaa aaatttcatg gacagtgttg aaggtgccat ctgcggtgaa      2100
     ggggtatgca gtgatgttcc tgaccggaga attgctaccg ctcgtgatgg gatcacagtg      2160
     ggcgaggcgt tgacggattt gtccacagat gagcgattag aatacgttgg ttcatttttt      2220
     agggacaagt tttctcactc ctcagttgat ttatccaact taaatgattt tatggatgga      2280
     atgcctaaaa ttgcatgccc tgaaatcttt aaccatgatt tctcagaaga ggagattttc      2340
     gattctattc tgaaatctcc taatggtaga gccccaggtc tggatggttt accttttgag      2400
     ttttataaag ccttttctag tagattttcc aaaattttag cattagttgc cgaattttcg      2460
     cgtgaagaag gaacttttcc aaaatcatgt cgaagttcgg tagccacatt aatttttaaa      2520
     gctggtgacc ccaaaacttt aaaaaactac cgcacaatct ctttaaccaa taccgattat      2580
     aaaataattt caagtgcatt aaaagcacgc ttaaacccca ccctcccttc catcgttggt      2640
     ccgtggcaga catgcggtgt gaaagggagg tccatatttg ataatttgac attcatgcgt      2700
     gatgcatttc aaagtggtga gctcaatgga cttcttttta gccttgacca agaggctgca      2760
     tacgatcgag taaatcacga gtatctgtat caagtgttac aaaattttgg ataccctgaa      2820
     aaattaatcc agtacgtaaa gttgttgcac acagatttca cgctagtggt atcggtgggt      2880
     agtgacctca cagcccccat tgctacagaa gtcgggttaa aacagggtga ccccagcgct      2940
     ggtgccctat actgcattgc aattgaacct tttttataca acttgaacaa aaagttaagg      3000
     atttcgggtc ccagtgcctg gcgcaggtac ccacatattt atttgtcggg atacgccgat      3060
     gatacgaata cgtttcttgg ccatgaaaac caaatttcaa ccgttgtgtc ggagtacaaa      3120
     aagtattctc aattttccaa ttcaaaatta aatagtagta aatctgtgat attaaaacta      3180
     ggagtgtata atcttcatag gccggtagat ttcccagtag tttcagatgg attgaaaatc      3240
     ttgggaattt attttggcag tgatgattat atggctcaaa attttactag acttatggcc      3300
     aagtttgatt caaagttgga attttatact aaaaaatgtg ccccagtgag tcatttttca      3360
     cgcagtaaaa tagtgaatac cttcttactt cctgttttct ggtatttttt caaagtactg      3420
     gatcccccca cagaaatttt aaatcaaatt tgcacaaaaa ttgaaaatta catttggtat      3480
     aaatcgaaga gatgggttgc ccgttcgttt ttgtacttac ccttggtaaa tgggggtctt      3540
     ggcgtgcgaa gtcctgtagc gcaaatcgct acttttagac tcacattttt acaaaaagtt      3600
     ctcggtttgt gtagtgataa atattttcta aatgagtcag taaatcaagt gaccaaaatt      3660
     ctaaatggtg ataataagtt aacaaagtat tatgagcaga taatgatggt gacccaggtg      3720
     cttggagtga gacttatttc atgtgatagg gaacgtcttc acagtattca tattaacagc      3780
     aaatttattt ttggtggtat tagtcataat tatcttcgca ggtgcaatat ttctaaaata      3840
     ggagatttat taaatgagac ttatttagta gggttagagt tgttgccaac ggcaacgcat      3900
     aggcatgtgt tggccgaaag gcagaaacat gttcagctgg ttgccatggt tacagagtct      3960
     gaaaatactc aactcgcaat ttcctcgctt tttcattcac ccactctagt caatttgtct      4020
     aagaacacta attacctaca tagtttgaga tctcataaaa atattaaatg tgaaaattta      4080
     gattcgggtt tttgctcact ctcgcagtgg gaacgtttag tagccactgc agtgtcaaat      4140
     ccggagaaag atgtggtttt taaaatgtgg catggcgtgg ggctaacgcc gtctcttgca      4200
     ctatcgatga atttttatga taacaattgc tgcccatatt gtaatattga aaggccaaaa      4260
     gtcggacatt atttagtttg tgagcatgtc acagatttga agcaagcggt tgccaagctg      4320
     ttgaccaagg taaaaataca cgcacgagac ttcgaggacg cctttcttca tggcacaaag      4380
     catgcgggtg ccaatatttt gatcttttat gcttactata ttatttatca atgctttgtt      4440
     cataggctta acaattactc tggttccttt aacctaatct cttcataccg ccacatgttg      4500
     tatggacgca taattacaga atttcatgca tgtaatctca ataagagttt gatatccaaa      4560
     ttttatgata agtgggataa atttaaaatt tacgaaatta caaatagtaa aattaatatt      4620
     aatttagggt tttgatgcat taactttcac tatttgtgca tgactaacca aagtaaagtt      4680
     aagttgtatg ttacttttta tattgtaatt gcaattattc atgatatctc tcacgtggtc      4740
     atcaagatga aggagaggac aaaaatgctt agttcctacc catgacggca ttatgatatt      4800
     gtcctctcaa gaagaaaatc accgccataa ttcgtaggca aaatttgtcg taatatacaa      4860
     aattaatatt ttaccaataa ttaaaaaaaa aaaaaaaaac tataataata ataataattt      4920
     tatcatacct cgatacaaat catagtttta gttctttatt tagttatgtg atttgttttg      4980
     tactctcatg attattaatt gaataagaag gttgaaatac ctatgttaaa aattaaaaaa      5040
     aaaaaaaaaa aaaaa                                                       5055
//
ID   Tx1-4_LMi   repbase;    DNA;    INV; 5436 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5436
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3484-3484 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(318..683,634..1089,1014..1676)
FT                 /product="Tx1-4_LMi_1p"
FT                 /translation="MCAKIVESCGGVMKYNYSDGNVGKVFVSHAGLGIRTV
FT                 RIFELPFEITSADIDAVISPYGRVISNIAERWSTAHRFPVLNGVRQLKVDL
FT                 HKHILSYIQVCGYRAIVMYDDQPKTCAACNSTGTCMMTSLRRVPRATLRAR
FT                 ESRVRAAARGAAAGRRGGLAARVATLPVTYVAAARGLPAAAGPEVNACLDV
FT                 PEVEMTTATTEPTEQTLPQTSXTPXPAVAVQEQAPAIQATESTTSDVLXEA
FT                 PMETIPLDNPHRQFWNNQHLLRVLRNSSLSQTLQPAPTVLEQPTPIESIKE
FT                 QLFVPNTVEHPPAETPTPTEAPLGNXQSPSRGSSPKRRRKRRLARQGAEVT
FT                 APPLREKAKQIGAQLRNSEHTSANVSGTMEKASTSVVLNTEYTSHPDSGLD
FT                 DQTVAERSPDKVLSTSENLLPPTWAEEMESSTEEEMDTSVTETPQLHSKRT
FT                 ATVNPSTMALQKLTHNKHXRLIHSLMTNTIKQLLMRPVADFCTSIFRQCV"
FT   CDS           join(1937..3742,3940..4179,4146..5069)
FT                 /product="Tx1-4_LMi_2p"
FT                 /translation="MGSEMGTALLVKEGIIIKDVTKLPNSRGIAGTFHNIR
FT                 LINIYAPSGSSNRRLRADFFKEDIVPLFGANNEHVILGGDFNCVLSAKDQI
FT                 PNMNKSIELERIVRDLRLIDSWEYKHGVAPGFTHITNHSASRLDRIYVTSA
FT                 LSTHILQSEVWPVAFSDHAAYLCTVNMERQGTCRYRGLWKLNVSHLQDPAC
FT                 QEAFLNTWRECEHRFASYTSAIEWWLKCAKPKIRRCFINYSKDKNSWHKKT
FT                 IEFYFHCLREVYMLGTSATGYYERIKRIQAKILALRRKQLEGYIVRSRVQT
FT                 MAQQENTSIYHVIQERKRGHSKILTELTAADGTTLSTHRQIKEAILSHFTA
FT                 LMSHKEVDEEAQNVLLQNVQGRVNHTEVEKLVAQATEEDVEYAVRESAKNK
FT                 SPGADGIPAEFYQVFWDQIKTKITLLCNELLEPTNGIPQEFREGIIVLIPK
FT                 NPVSKKIDNLRPITLLNSDYKIFARLLAHRLKSTINSVTGPYQTSVGQDRR
FT                 LFHTLCDYRDLISTAEVCKLKCAIISLDFDKAFDRVNHQYLLRTMHAMGFP
FT                 PRFVTILQHMITNNTSQIIINGQPTRKIEVSSSVDRVVQFLWRSFPSQSSP
FT                 CLPHGHTSGHLRELTVFKCLGIDFHNTIRRTIAANYKALLNKLRACAQTYS
FT                 IRKLNEIQKVTVANICLTAKLNYVAQVLPIPQLLCRSSPAHTSTMTKQFMS
FT                 ALGHFVSRGHIFKVHYDTLTLPPISGGLNLTDIGKKAQALYIAKTSEQWKT
FT                 CTNSLVAHLLDEIAPADLSPPISVQHVPNGLYHLKYFLLEYSYLQARIPDV
FT                 RKKKVKDIYRELMKDKKKNIIEDKYRSHNWKIIWENIHCRNLPSTMKTTWY
FT                 LVVNRKIATNSKLYNIHLANSPLCVTCNVLDTEEHRFGCDKVKEIWMYIRR
FT                 KLASISRTSPNYITASDFLFPEDVPFPKTKRNAINWLKGASVHYIFSNTDM
FT                 KLEDFWVYLTTEHHKLMKTRHYKKHYANFLLNTLP"
XX
SQ   Sequence 5436 BP; 1696 A; 1250 C; 1156 G; 1324 T; 10 other;
     gcggacagcg tggaggmaac acacgccgtg ctgtgcgctg cgccgctttg ctgcttccgc        60
     gtggtaagtc tctgcgcttg ctgtagcgac ctgcagttat tcgtgtcagt tgtagaagat       120
     gaatacggaa cagtgatgct gaaaggaata gaaaggatac cctgaagttt acttttgaaa       180
     gagaatttgc ccgaccgaaa tcttttgaaa ttgaggaatg gctagaacaa tgcgttaaaa       240
     taggaatcga ggacattatt ggcatccatc tatcgattgt tagcagcgtg gtttttgtga       300
     aactcgctag atccgatatg tgtgccaaaa tagtcgaatc ctgtggtgga gttatgaagt       360
     ataactacag tgatggcaat gttggaaagg ttttcgtttc tcatgcaggc cttggaataa       420
     gaactgtgcg catttttgaa ctgccttttg agataacaag tgccgatata gacgcagtga       480
     tctcgccata cggtagagtg attagtaata ttgctgaaag gtggtctact gcccatcgct       540
     ttccggtact aaacggggtg cgacagctga aagtcgactt gcataagcac attctgtcat       600
     acattcaggt ctgcgggtac cgagcaattg tgatgtatga tgaccagcct aagacgtgtg       660
     ccgcgtgcaa ctctacgggc acgtgagagc cgagtgcgtg cagcggcgcg tggcgcagct       720
     gccggccggc gaggcggcct ggccgcccgt gttgcgactc tgccggtgac gtatgtggcc       780
     gcggcgcgcg gtctccctgc tgctgcgggc cccgaagtca atgcttgtct tgacgtgcct       840
     gaggtagaga tgacgacggc gacaactgaa ccaactgaac agaccctccc tcagacttct       900
     sagacaccgm cacctgctgt agccgtacaa gaacaggccc ctgcaataca agcgacsgaa       960
     tcgacaacct ccgacgtcct amcagaggcc cctatggaaa ctattccact tgacaacccg      1020
     caccgacagt tttggaacaa ccaacaccta ttgagagtat taaggaacag ctctttgtcc      1080
     caaacactgt agagcaccca ccagcagaga ctcctacacc gacggaagct ccgcttggaa      1140
     atgamcaaag tccgtcaaga ggttcatctc ccaagagaag aaggaaacgg aggcttgcgc      1200
     gtcagggagc ggaggtcact gcaccgccct tacgggaaaa ggcaaagcag ataggtgctc      1260
     aacttaggaa ctcagaacac acgtccgcca atgtgtcagg aacaatggaa aaggcctcga      1320
     cttctgtggt attaaatact gaatacacct cacaccccga ctccggactt gatgaccaga      1380
     ctgtcgccga acgttctcct gacaaggtac tcagcacgtc ggaaaattta ctaccaccta      1440
     catgggccga agaaatggag tctagtacgg aagaggagat ggatacctct gtaaccgaga      1500
     ccccacagct ccattccaaa cggacggcga ctgtcaatcc ctccacgatg gctctacaga      1560
     aattaacgca caacaagcac kttcgactga tccattccct aatgacgaat actattaaac      1620
     agctcttgat gcgcccggtg gcagattttt gcacaagcat ctttcgacaa tgcgtttaga      1680
     mactttcctt tagacttact tcatggttac taccacatct tattttctaa gcttaatttg      1740
     cgtatagcca ccmatcattc cactacaggc ctataggctc gcaacggtaa atcttaataa      1800
     gatacgtagt gagctgaaat tacaacatct aaaagacttc ttacatgcag cagacgttga      1860
     cataaccttc ctgcaagaag taacagacat caggcttgac tgcataccag gctataatgc      1920
     cttcattaat cctggtatgg gttctgaaat gggtacagcc ttacttgtga aggaaggcat      1980
     cattatcaag gatgttacga aattacccaa tagtaggggt attgctggca ccttccataa      2040
     catcaggctc ataaatatct atgctccatc tgggtccagt aatagacgac tacgagcaga      2100
     cttctttaag gaagacattg ttcccctgtt tggtgctaac aacgaacacg tcatcttagg      2160
     aggtgacttt aattgcgtcc tcagcgctaa agatcaaatt cccaacatga acaaatctat      2220
     tgaactggag cgcatagtcc gagacttacg actcattgac tcgtgggagt acaaacatgg      2280
     agtggcacct ggttttaccc acatcaccaa tcattcagca agccgtttgg acaggatata      2340
     tgtcacgtct gccttgagca ctcatattct gcagtctgaa gtttggccag tggccttttc      2400
     cgatcacgca gcatatttat gtaccgtaaa tatggaacga caaggcacgt gcagatacag      2460
     aggcctgtgg aaattaaatg tttcacacct acaagacccg gcatgtcaag aggccttcct      2520
     caacacctgg agggagtgcg agcacagatt cgcctcttat acttcggcaa tagaatggtg      2580
     gctaaagtgt gcaaaaccta aaataaggag atgttttatt aactactcta aagataaaaa      2640
     ttcatggcat aaaaaaacaa tagaatttta ttttcactgt ttaagagaag tctacatgct      2700
     aggcacatcg gctactggtt actatgaacg aatcaaaaga atacaggcca aaattttggc      2760
     cctgcgtcgt aaacaactag aaggatacat agttcgatca cgggtccaaa ccatggcaca      2820
     acaagaaaat acgtccattt atcatgtcat acaagaaagg aaacgtggac acagcaagat      2880
     actgacagaa ctaacagcgg cagatggtac aactttgtcc acacatagac aaatcaagga      2940
     agcaatatta agccatttca cagccttgat gtctcataaa gaagtggacg aagaagcaca      3000
     aaatgttcta ctgcaaaatg tgcaaggcag agtcaaccac acggaagtag agaaactcgt      3060
     agcacaggca accgaagaag acgtggaata cgccgttagg gaaagtgcca aaaataaatc      3120
     tccaggagcg gatggcatcc cagcggaatt ctatcaagtg ttctgggatc agatcaaaac      3180
     aaaaattaca ctcctctgta acgaactgtt ggagcccaca aatgggatcc cacaagaatt      3240
     tcgcgaaggc atcatagttt tgattccaaa aaatcctgtt agtaaaaaaa ttgacaattt      3300
     gagacctatc actcttctta acagtgatta caaaatcttt gctcgacttt tagcacacag      3360
     gcttaaatcg acaattaaca gcgtaactgg accctaccag acgagtgtgg gccaagatag      3420
     gagactcttc cacaccctgt gcgactaccg cgacctcata tcaacggccg aggtctgtaa      3480
     acttaaatgt gccataatat cattagactt tgacaaagcc tttgacaggg tcaatcacca      3540
     gtatctcctc cgtaccatgc atgcgatggg ttttccgcct cggttcgtaa ccattttgca      3600
     acatatgata acgaacaata catcccaaat catcatcaat ggacagccta ccaggaaaat      3660
     agaagtatcc agttctgtag acagggttgt ccagtttcta tggcgctctt ttccatcgca      3720
     atcgagcccc tgcttgccac actgatgcag cgtctacaag gattacaaat acacggaaac      3780
     aaaatagttt gcaaggccta tgcggatgat gtgggtttcc ttgtcataac agacctgaaa      3840
     tagagaccgc tttgcaaatc gtacaacagt atgaacgtgc atctggcgcg ctgctcaaca      3900
     ggacaaaatc tggaattttt aatatcggcc gtggtttagg gccacacatc tggacatcta      3960
     cgtgagctga cggttttcaa gtgcctaggt attgactttc acaatactat tcgtcgtacc      4020
     atagcagcaa actacaaggc actgttaaat aaactacgcg cctgtgcaca gacatacagc      4080
     atcaggaaac tcaatgaaat ccagaaagta acagtagcca acatctgcct aactgcaaaa      4140
     cttaattatg tcgctcaagt cctgcccata cctcaactat gacaaaacaa ttcatgtccg      4200
     cacttggcca ctttgtcagt cgcggtcaca ttttcaaagt gcattatgac accctaacgc      4260
     ttccgccaat aagtgggggt ctcaatctca cagacattgg taagaaggca caggcgttat      4320
     acatcgctaa aacttctgaa caatggaaga cttgtaccaa cagtcttgtt gcacacttgt      4380
     tggatgaaat agctccggct gacctcagtc cacccatcag tgtacaacat gtcccgaacg      4440
     gactttatca cttgaaatac tttctattag agtatagcta tttacaagca cgaatccccg      4500
     atgtcagaaa gaagaaagtt aaagacatat accgtgaatt aatgaaagat aaaaagaaaa      4560
     acatcataga agacaaatac agatctcaca actggaagat aatttgggaa aatatccatt      4620
     gtcgtaactt accttccacg atgaagacta cgtggtactt agttgtaaat cgcaaaattg      4680
     caactaactc taaactttac aacatccacc tggcaaactc accactttgt gtcacgtgca      4740
     acgtattgga tacggaagaa caccgattcg ggtgcgacaa agtcaaagaa atatggatgt      4800
     atataagacg gaaattggca tccatcagca gaacgtcgcc aaactacata acagcttccg      4860
     attttctttt cccagaagac gtaccgttcc ccaaaacaaa aagaaacgcc atcaactggc      4920
     taaagggggc atcggtccac tacatttttt caaacacgga catgaaattg gaagatttct      4980
     gggtatacct taccacggag catcacaagc tgatgaaaac aagacattac aagaaacatt      5040
     acgctaattt cttactaaac acattaccat aacaaggaag gaaggaaatt tttatttaca      5100
     caacattcct tatatgtttg tttcgaagcc aaatttatat atcgccattg ttttaccttt      5160
     ccttcagttc aggagtcaaa gtattatgtt ttaatattga ggacaggatg gtccccacgt      5220
     tttaccgaaa gataggacat gmttttaatt tctgttggtt tattttgaac agttaaatgg      5280
     caacattaac aagagaaaag attttaggtt ataaacggca atggagccat aagacctttc      5340
     aggtcaacat taacatggag gcagaaatag tttttttttc ttggaagaag acatttattt      5400
     acttaagaaa aaagaaaaat aaaaagaaaa aaaaaa                                5436
//
ID   Tx1-5_AAe   repbase;    DNA;    INV; 4664 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4664
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 clade non-LTR retrotransposons from the yellow fever
RT   mosquito.";
RL   Repbase Reports 11(4), 1461-1461 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 14 sequences with >96%
CC   identity. It is positioned at the deepest branch of the Tx1
CC   clade, and does not show sequence specificity.
XX
FH   Key           Location/Qualifiers
FT   CDS           138..1199
FT                 /product="Tx1-5_AAe_1p"
FT                 /translation="MEDGLVKNTLAFRFPPGAPAPTLVDIARFVKNLDADL
FT                 DSMETSYKLAEERCVCVKFKSLDDMKEAQSQIPEIVFFRYSNGEKVEVKTT
FT                 VAGCCTKYVRIFDLPPEVPDSEIAAVLGRYGVVKRMIREKFPADLGLNMFT
FT                 GVRGVYLDIKKVVPASLYFLNRKGRIFYEGLKQKCFLCREEGHLKADCPQR
FT                 ENSKGVKSVPANHVLGESSVSSPALPGESDCEKVSVASTPSYSGVLTGAKP
FT                 KVAEEKLVPKMVTLVSERNKSPARETSVERCASVENIEMESETDADDVVKS
FT                 GVKRQHSTGGSAGETDEDGATAFTKAHGNRKSSRTAKKSMTPLETIASVPL
FT                 SQRKGNRSSSK"
FT   CDS           1279..4539
FT                 /product="Tx1-5_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMNFVRKVATININAMVVQAKKMLLKDFLVQNDVDVA
FT                 LLQEVQFEDFSFIQSHEAFVNIGDTNKGTAILVRSTLQYSDLLMDPGGRVI
FT                 SVVVDGLNFVNVYGHSGSQYRAERDELFTDTIAVHFNKSRVISNVLAGDFN
FT                 CVLEEKDCKGKMYNFSSGLKSAVELLDLRDVAIAIKGAKREYTFYRGDSAS
FT                 RLDRIYVSKSFIGSVSRCVAKPIAFSDHHALVVDYRIEADQRAPISGGSYW
FT                 KINDFLLNETSIQEEFRKEYEEIKKRKKYAESFSEWWSYDVKRKVKQFYKR
FT                 KAFEFNDANRRKKDIWSKKLSDLCEKQSKGENVQNEISVAKSKILEVEVDR
FT                 MKGYASRFQPSSLLENEKIGLYHVAKMIKRKENPANWTLEGENGPVTNIRE
FT                 LKGMVSEHYRTLFSENTPSESRCAALDHINKVFSAVAQEDFVRPFNEDELR
FT                 ATINYAKQKKSPGPDGITYEFYLTHFDLLKDDLLKLFNGFLDNSLVPIENF
FT                 ADGVITLIPKNGRAKELSNFRPISLLNTDYKLLTKLIANRISSKIGEIIDE
FT                 GQSAVVPGKSCIDNLDITRTLVLKAQQSKSMKFALLSVDLEKAFDVVDHKR
FT                 LWEVLERFGLPRTIITMIQRLYADATSRVLVKGSLTNSFQIKRSVRQGCPL
FT                 SMTLFVLYIEALIRQIYAGVRGILIDNRFFKIRAFADDITIIIRNDEEFDL
FT                 VFKIIDDYSLSFGIKLNFKKSNFIRFNNCRIGPQKVSEKNEIKILGLLVST
FT                 CWKEIVNSNFKKLINALKHTVHMFSSRRMNLIEKVTVLNTFVLAKLWYVSQ
FT                 VVPPNNMHLAEIKKITGEFLWSHHKMFRVQRDQLYLDNSRGGLALIDPESQ
FT                 CQSLFIRNLLFSNGRKIDHPLLKINNCKNSTINTKKLFEVAKTISSMDHIV
FT                 TNKQIYNYLIAKKTIEVKITNKFPDMPWEIIWENISAKFVSSQARSVLFEV
FT                 FNDVYPNRIKMFNHNFANVSNCLCEICDKHDSNIHRIKECKNSKIVYDWVT
FT                 DIIRTKLKIRMKSAEEIIYKSINVKDSKAKSALWLVSEMIMYNMKYHKNSC
FT                 LYSFKKLIRDARWNNKKLFDKQFGKFLNFC"
XX
SQ   Sequence 4664 BP; 1553 A; 735 C; 1061 G; 1312 T; 3 other;
     cagttgacta tcagacttcg tggtgcgtgg atgtgtttat tctatctctc gaacgcattg        60
     taccctattt caatttaacg ttgcgcagtc acgtggctgc tgtattcttt tttcgtttcg       120
     tcggtcgwat attaacaatg gaagacgggt tagtgaaaaa caccctagcg ttccggttcc       180
     cgccgggagc accagcaccc acgctggtgg atatagcgcg atttgttaag aatcttgacg       240
     cggatctcga ttcgatggag acaagttaca agttagcgga agaacgatgc gtctgtgtga       300
     agttcaagtc actcgatgac atgaaagaag cccaatccca aattccagaa atcgttttct       360
     ttcggtactc gaatggtgaa aaagtggaag tgaaaacgac agtggccgga tgctgtacga       420
     aatacgtacg tatcttcgat ttgccgccgg aggtgccgga ttcggaaatc gctgctgtgt       480
     tgggcagata cggagttgtt aagagaatga taagagaaaa gtttccggcg gatttggggc       540
     taaatatgtt tacgggagtg cgtggagtgt atcttgacat taagaaggtg gttccagcat       600
     cgttgtactt cctgaacagg aagggccgta ttttttatga agggttaaag cagaaatgct       660
     tcctctgcag ggaggagggc catttgaaag ccgattgccc tcaaagagag aacagcaaag       720
     gagtaaaatc ggtaccagca aaccacgtgc ttggggaatc gagtgtatct tccccagcac       780
     ttccaggtga aagtgattgt gaaaaagtgt cagtagcatc tactccaagc tattcaggag       840
     ttttaactgg tgccaagcct aaagtggcgg aagaaaagtt ggtgccaaaa atggtcacgc       900
     tggtgtctga gcgaaataaa agtccggcac gagaaaccag tgtcgaacgg tgtgcttctg       960
     ttgagaacat tgagatggaa tcggaaacgg atgcggacga tgtcgttaaa tctggtgtga      1020
     agaggcaaca ttccaccgga ggatccgccg gtgaaactga cgaggacggt gcaacagcat      1080
     tcaccaaggc tcatggaaat cggaaatcat cacgtactgc gaagaagtcg atgactccac      1140
     tcgaaacgat tgcgagtgtg ccgttgtcac agcgtaaagg caatcgtagt tccagcaaat      1200
     aggtgtaaag gtgattgagg ttatgtttca ttgcaacacg tgtctctgat cgtgggtagt      1260
     ttgagaaatt ggtcgtgtat gatgaatttt gtgcggaaag ttgccacaat caacataaat      1320
     gcgatggtgg tacaagcgaa aaaaatgctg ttgaaagatt ttctagttca aaatgatgtt      1380
     gatgtagcgc tcctacagga ggttcagttc gaggatttct cctttattca gagtcatgaa      1440
     gcatttgtaa acatcggtga tacaaacaaa ggtacggcga ttttagttag aagtaccttg      1500
     caatacagtg accttctaat ggaccccggc ggaagagtta tatcggtggt agtagacggt      1560
     ttgaactttg tcaacgtgta cgggcactca ggttctcaat acagagccga acgagacgag      1620
     ctgtttaccg ataccattgc ggtgcacttc aataagtcta gagttatcag caatgtatta      1680
     gcgggtgatt ttaattgtgt gttagaagag aaagactgta aaggaaaaat gtacaatttt      1740
     tcgagcggtc taaagtcggc agtggaactt cttgatctcc gtgatgtggc gatcgcgatc      1800
     aaaggagcaa aaagagagta tacgttctac cgtggagatt cagcttcgag actggatcgg      1860
     atatatgtgt caaaaagttt tattggaagt gttagtcgat gcgtagcgaa gcctattgcc      1920
     ttctccgatc atcatgcgct agtagtggat tatcggattg aagcagatca gcgagcgcct      1980
     atttcgggtg gcagttactg gaaaataaat gactttttac tgaatgagac ctcgattcaa      2040
     gaagagtttc gaaaagaata tgaagaaatt aagaaaagga agaaatatgc agagagtttc      2100
     agtgaatggt ggtcatatga tgttaaacgt aaggttaagc agttttataa acggaaagcc      2160
     ttcgaattca atgatgcaaa tagaagaaag aaagatattt ggagtaaaaa gctgagtgat      2220
     ttatgtgaaa aacagtcaaa aggggaaaac gtacaaaacg agatcagtgt ggctaaatca      2280
     aaaattctgg aagtggaagt agacaggatg aaaggctatg ctagccgttt ccaaccgagc      2340
     tccttactgg aaaatgaaaa gataggacta taccatgttg ctaaaatgat caaaaggaag      2400
     gaaaatccag ccaactggac tctcgaggga gagaacggtc cggttactaa tatcagggaa      2460
     ttaaaaggta tggtaagtga acactatcgc acacttttta gcgaaaatac gcctagtgaa      2520
     tctcgatgtg cggcattaga ccacatcaat aaagtgttta gtgcagtagc gcaagaggat      2580
     tttgtacgtc cgttcaatga ggacgaactt cgagcgacca ttaactatgc aaaacagaag      2640
     aaatccccgg gacctgacgg aataacttac gaattctacc taacacattt cgacttgtta      2700
     aaagatgatc ttctgaagtt gttcaacggt tttttggaca attcacttgt tccaatcgag      2760
     aactttgctg atggtgtaat tacgttaatc ccgaagaatg gaagagctaa agagttatcc      2820
     aactttagac caataagctt attaaacact gattataaat tgcttactaa gttaattgca      2880
     aatcgtattt cgagtaaaat cggtgaaata attgatgaag gtcagtcagc tgttgtgcct      2940
     ggtaaatcat gtatagataa tctggatatt acgagaacac ttgtccttaa ggctcagcag      3000
     tcaaaaagta tgaaatttgc gttattgtct gtagatttag aaaaagcatt tgatgttgtc      3060
     gaccataaac gtttatggga ggtacttgaa agatttggtt taccacgtac gattataacg      3120
     atgatacaaa gattatatgc tgatgcaaca tctcgagttt tagtgaaagg cagtctaaca      3180
     aatagttttc agattaaaag atctgttaga caagggtgtc cgctgtccat gacgttgttt      3240
     gtactgtaca tcgaggcttt aataagacaa atttacgctg gagtaagagg aatactaata      3300
     gataatagat tttttaaaat aagagcattt gcggatgaca ttacaattat tattagaaat      3360
     gatgaagagt ttgatctagt ttttaaaatt atcgatgatt attcgttaag ctttggaatc      3420
     aagttgaatt ttaaaaagtc aaatttcatc agattcaata actgtagaat aggccctcaa      3480
     aaagtttccg aaaaaaatga gataaaaatt ttaggactac ttgtgtcgac atgttggaaa      3540
     gaaatagtga atagtaattt caaaaaatta attaacgctt taaagcatac cgtacatatg      3600
     ttctcatcac gaagaatgaa tcttatagaa aaagtgactg tgctgaacac atttgtatta      3660
     gcaaagcttt ggtatgtttc tcaggtagtc cctccgaata acatgcactt ggcagaaata      3720
     aaaaagataa ctggtgaatt cttgtggagt catcataaaa tgttcagagt tcaaagagat      3780
     caactttact tagataatag tcgaggtggt ttggctctaa tcgatccwga atcacagtgt      3840
     caatcgcttt ttatcaggaa tttgcttttt agtaatggtc gtaagatcga tcatcctttg      3900
     ttaaaaatca ataattgtaa aaactccaca atcaatacaa aaaagttatt tgaggtagct      3960
     aaaacgataa gcagtatgga tcatattgtt actaacaagc agatatacaa ttacttaatc      4020
     gctaaaaaga ctatcgaagt taaaataacw aacaaatttc cagatatgcc atgggaaatt      4080
     atttgggaaa acatttctgc taaattcgtg tcttcacaag ctagatctgt attgtttgaa      4140
     gtttttaatg atgtgtaccc gaataggatt aaaatgttca accataattt tgctaatgta      4200
     agtaactgtt tatgtgaaat ttgtgataaa catgattcaa atatccacag gataaaggag      4260
     tgtaaaaatt cgaaaattgt ttatgattgg gtaacagata taattagaac aaaattaaaa      4320
     atcagaatga aatcagctga agaaataatt tacaaaagca tcaacgttaa agattccaaa      4380
     gcaaaaagtg cattatggtt agtttcagag atgataatgt ataacatgaa ataccacaag      4440
     aatagttgtt tatatagctt caaaaagctt attagagatg ctcgatggaa caacaaaaag      4500
     ttatttgaca aacaatttgg taaatttctt aacttttgtt aatgaagtgc tataaaggta      4560
     attgtagtta aacttaacaa tatcaacatg attgtatgta aaatacaata cggtgtatgc      4620
     atccttaggt taagtttgta aacatgttgt aaataaaaaa aaaa                       4664
//
ID   Tx1-5_CQ    repbase;    DNA;    INV; 4748 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-5_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4748
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 637-637 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           130..1275
FT                 /product="Tx1-5_CQ_1p"
FT                 /translation="MEARVVRENTVKLKFGAQNRGPTNSEMFAFFRKQNWN
FT                 EEMLSAMYKEDYSLLVKFRTKQLMLDVLAKFGNHVEFGYEDGSNVQLAVSA
FT                 ACGVFKYVRVFGLPPEVDDKAIADVFGKFGNIHQMVRERFPAETGFPIWNG
FT                 VRGIHMEVTAELPAQVYVQHIRARVYYDGFQNKCFSCGSTEHLKAVCPKKQ
FT                 TVQSRLESYAHPPLDRGAKGSGQKAGLGAGQRAGQGAGQGAGQGSGSKNPS
FT                 WNDMIKNFPDLPTNVQTCLTPEQATLNKPGQEQRKEGEQGEGWVTIPIKEK
FT                 LRGRGLRQRKATDADSDPEDLFKVPDAPKLARLQGTRSRSLNSRKQKENSN
FT                 AQVPVVLIEGSPSPSNQKTDTETSDGKASEEDAAMVDLK"
FT   CDS           1375..4629
FT                 /product="Tx1-5_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MQYSYKIATVNLNSTSTDVNKGLLRDFVYNHDIDIVM
FT                 LQEVAYDNFLFIPTHFPLVNISEDNKGTAVLIRKSFNFKDVLLDPNGRIVS
FT                 FVLNNINYVNIYAHSGSDKRRERNDLFTNRLAVHLNKPGTRFSVLCGDFNC
FT                 ILDGDDTRSNVKNFCAGLKNIIDLFSFKDIAKQLKKAAFTFIRGDSASRLD
FT                 RFYGPIEFVNEVIDLQNIPVAFSDHHAVIIKVNSLKDHICAKGRGYWKINP
FT                 SLLDSEEISKRFQDEYIKLKSRSTYNTDLNSWWHFILKPKIKQFYKTESWK
FT                 INSATQLQKSNYLSELLKMAERQHKGENLTAEIAACKTKLMEIEYNRLNNY
FT                 SKKLSNLNISEGEKISVFQVSKQINQGHDSQYLRLQGSDGIITEKNELDEL
FT                 IFQHFSKQFDIDNTSTNLRNEENPLDSISKSLDDDDREMMIDPITEEEILN
FT                 ILNACNKKKSPGIDGLTYEFYITHYDLIKKDLTKLLNGYLTATYSPPKEFT
FT                 DGIVILIPKKGDNKQLENYRPITLLNTDHKLLTKIIAARIQEKMDKLIGPG
FT                 QSACVKNLSCSDNLKDIRKMMTKAAETKRFKGFLLSLDLEKAFDRVNHSFL
FT                 WDVLMKFGFPEQIINCVKKLYVHASSRVLYNGFLSKEFKIKASVRQGCPLS
FT                 MLLFVLYIEPLIRRIYANTCGILAYDKILKVTAYADDLNVYVRNCEEFDLI
FT                 IQIISSFSKFAKIRLNQRKSAFLRINNCISGPFLIPEADDLKILGVVFKNS
FT                 WNSSIDQNYNKLVNDIKYRLTLNSFRKLSLVEKCWFVNSFVLSKLWYIAKI
FT                 FPPKNIHLAKIKASVGNFIWNNQIFKVDRRQLYLSAENGGLGLQDPESKCK
FT                 AIFIRNVLQSDCPSNDEYLLRYKYTSKLSRNSREWLETANMIKSNYNLHSC
FT                 KLIYLYFIDEFKFKPKVEIEYPQMSWETAWLNLSSXFLQPEDRSSVYNFLN
FT                 DLIPNRFKLFQYGIRKVTDNKCEICFEIDNNLHRLKSCPNVMEIRNWTEQI
FT                 LRTRMNVRCNDLEDILFSHIDKNSIQQKAALWITVHFVGFVFRKFPKCSLY
FT                 VFKKSIRELRWNKRKQFVLHFGTLLNIC"
XX
SQ   Sequence 4748 BP; 1652 A; 753 C; 999 G; 1342 T; 2 other;
     cagtttactg tcggcttcca ctcgcttcag acgtgtgcag ttatacgcta ccagaagtat        60
     cgagtattga gctattgtga aaataatctc ttgaccttga actgagtttg atccggaaag       120
     tgtaagaaaa tggaggcgag agttgtgcgc gagaacactg tgaagctaaa atttggtgcc       180
     caaaaccgtg gaccaactaa ctcggaaatg ttcgcgtttt tccggaaaca gaactggaat       240
     gaggaaatgc tttcggctat gtacaaggag gactacagcc ttcttgtgaa attccggacg       300
     aagcagctta tgctagacgt tcttgctaag tttgggaacc acgtggaatt cgggtatgag       360
     gatggatcga atgttcagtt ggccgtctcg gccgcttgtg gagtgttcaa gtacgtgaga       420
     gtatttggtc taccgccaga agtagatgac aaagctatcg cagatgtgtt cgggaaattc       480
     gggaacatcc accagatggt tcgagaacgg tttccggctg agaccgggtt ccccatatgg       540
     aacggtgtcc gtggtatcca tatggaggtg accgcggagc tccccgctca ggtgtacgtc       600
     caacacatca gagcgcgggt gtattatgac ggcttccaga acaagtgctt ctcttgcggg       660
     tcgacagagc acttgaaagc ggtttgtccg aagaagcaaa cagtgcaaag tcggttggaa       720
     tcttatgctc acccaccgct ggaccgcggt gcgaaaggat cgggtcaaaa agcgggccta       780
     ggagcgggcc aacgagcggg tcaaggagcg ggccaaggag cgggtcaagg aagcggatca       840
     aaaaatccta gctggaacga catgatcaaa aacttcccgg atctcccgac gaacgttcaa       900
     acatgtttga caccggaaca ggctacacta aacaagccgg ggcaggagca gcgcaaggaa       960
     ggggaacaag gggaagggtg ggtaaccatc ccgatcaagg aaaagcttcg cggccggggg      1020
     ttgcggcaaa ggaaagcgac cgacgcggat tcggatccag aggacctgtt caaggttcca      1080
     gacgcgccga aacttgcgag gctgcaagga acgaggtctc gatcgctgaa cagccggaag      1140
     caaaaggaga actcgaacgc tcaggtgccg gtcgttctga tcgaaggctc accttctccg      1200
     agcaaccaga agacggacac ggaaacgagc gatggaaagg cgtccgaaga agacgcagca      1260
     atggtggatc taaagtgagg ttaggtgagt tcacctgacc aattgttatt gagagagtgt      1320
     gtgagtgtgt gagtgtgttt gtgtgaatgt gtgtgtgtag tataaaacga aaagatgcaa      1380
     tattcctata aaattgccac agttaatctt aacagtacca gtacagatgt caacaagggt      1440
     ttgcttaggg actttgtata caatcatgat atcgatattg tgatgctaca ggaggttgcg      1500
     tatgataatt tcttgtttat accaacacac tttccgttgg tcaatattag tgaggataac      1560
     aagggtaccg ctgtattaat aagaaagagt ttcaatttta aagatgtttt gctcgatcca      1620
     aatgggagaa tagtatcgtt tgttttgaat aatataaact atgttaatat ttacgcgcat      1680
     tcgggctctg acaaaagacg ggaacgcaat gatttgttca caaatcgttt agcagtacac      1740
     ttaaacaaac ctgggacacg attttctgtt ttatgcggtg attttaattg tattttagat      1800
     ggcgatgaca ctcgcagcaa cgttaaaaac ttttgtgccg gacttaaaaa cataattgac      1860
     ctattttcat tcaaagacat agctaaacaa ttgaaaaaag cagcttttac attcattcgt      1920
     ggcgattcgg cctctcggtt ggatagattt tatggaccga ttgagtttgt aaatgaagtg      1980
     atcgatttgc agaacatccc agtggcattt tcggaccatc atgcagtcat tattaaagtt      2040
     aattcattaa aagatcatat ttgtgctaag ggcagagggt actggaaaat taatcccagc      2100
     ttacttgatt cggaagagat ttctaaaaga tttcaagatg aatacattaa gcttaaatcg      2160
     cgatcaactt ataatacaga tttgaacagc tggtggcatt ttattttaaa acctaagatt      2220
     aaacaatttt acaaaacaga aagctggaaa attaatagcg caacccaatt gcagaaatca      2280
     aattatttat cagaattatt aaaaatggct gaaaggcaac acaaggggga aaatcttact      2340
     gctgaaattg ctgcatgtaa aacgaagctt atggaaattg agtacaacag actgaataac      2400
     tactcaaaaa aattatcaaa ccttaatatt tcagagggag aaaaaattag tgtttttcaa      2460
     gtttccaaac aaattaatca aggtcatgac agtcaatatt tacgacttca aggatctgat      2520
     ggaattatta cagaaaaaaa tgaattagat gaacttattt tccaacattt ttcaaaacaa      2580
     tttgatattg ataacactag tacaaattta agaaatgaag agaatccttt agactctata      2640
     tcaaaatcat tggatgatga tgatcgggag atgatgattg atccaataac tgaagaagaa      2700
     attttaaata tacttaatgc ttgtaataag aaaaaatcac caggaattga cggccttaca      2760
     tacgaatttt atataactca ttatgattta attaaaaaag atttgacaaa attgttgaat      2820
     ggatatttaa ccgcaacata ttcaccccca aaagagttta cggacggtat tgtgattttg      2880
     attcccaaga aaggtgacaa taaacaattg gaaaattata gacctattac tcttttaaat      2940
     actgatcata aattactaac aaaaatcata gcagcgcgaa tacaagaaaa aatggataag      3000
     ttaattggcc ctggtcaaag tgcgtgtgtt aaaaatttat catgttccga taatcttaaa      3060
     gatataagaa agatgatgac taaagcagca gagacaaaac gatttaaagg atttttgttg      3120
     agcctggacc tagaaaaggc gttcgatcgt gtaaatcata gttttttatg ggatgtcttg      3180
     atgaaatttg gatttcctga gcaaattatt aattgtgtga agaaattgta cgttcatgcc      3240
     agttctcgag ttttatataa tggtttttta agcaaagaat ttaaaattaa agcttcggtg      3300
     cgccaaggat gcccattaag tatgttatta tttgtattat acatagaacc gttaatcaga      3360
     agaatatatg caaatacttg cggtattctt gcttatgaca agatccttaa agttacagca      3420
     tatgctgatg acttaaatgt ttacgtacgc aactgtgaag aatttgattt aataatacaa      3480
     atcatttcat cattctcaaa gtttgctaaa attcgattga atcaaaggaa atcggcattt      3540
     ttgagaataa ataattgcat ttcaggaccg tttcttattc ctgaagcaga tgatttaaaa      3600
     atattaggtg tagtttttaa aaatagttgg aacagtagca ttgatcaaaa ttataataaa      3660
     cttgtgaatg atataaaata tagattaacg ttaaactctt tcagaaagct gagtttagta      3720
     gaaaaatgtt ggttcgtcaa ttcgtttgta ctttcaaaac tatggtatat agcaaaaatt      3780
     tttcctccaa aaaatattca tttagcaaaa attaaggcaa gtgttggaaa ttttatatgg      3840
     aacaatcaaa tttttaaagt agatagacgg caattatatc tttcagcaga aaatggcggc      3900
     ttaggacttc aagaccctga aagtaagtgc aaggcaatat ttataagaaa tgtgttacaa      3960
     tctgattgtc caagtaatga tgaatattta cttcgataca aatatacatc taaattatcg      4020
     cgtaactcga gagaatggct ggaaactgca aatatgataa aaagcaacta caatcttcac      4080
     tcgtgcaaac ttatctattt atattttatt gatgaattta aatttaaacc taaagttgaa      4140
     atagaatatc cgcaaatgag ctgggaaact gcatggctga acctaagttc aawttttttg      4200
     cagccagaag atcgatctag tgtttataat ttcttaaatg acttaattcc taatagattt      4260
     aaattatttc aatacgggat aagaaaagta accgataata aatgtgaaat ctgctttgaa      4320
     attgataaca atctacatcg ccttaaatcg tgtcccaacg ttatggaaat tagaaattgg      4380
     actgaacaga ttttgagaac ccgaatgaat gtaaggtgta atgatttaga agacatatta      4440
     ttctcccata ttgataaaaa tagtattcaa caaaaagcag cattatggat tacggtacat      4500
     tttgtaggat ttgtctttag aaaatttcca aagtgtagtt tgtatgtatt taaaaaaagt      4560
     attagggagc ttaggtggaa taaaagaaaa caatttgtat tacatttcgg aaccttgttg      4620
     aacatctgtt gaaattctca tgtattgtaa aagcttaacg taaactggta aataaatgtt      4680
     tttttgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaacaaagw aaaaaaaaaa      4740
     aaaaaaaa                                                               4748
//
ID   Tx1-5_LMi   repbase;    DNA;    INV; 5350 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5350
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3485-3485 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(211..1131,1092..1652)
FT                 /product="Tx1-5_LMi_1p"
FT                 /translation="MSTNLRKNTLVFSFDKETRNVQPTSLEIHDWITEVIG
FT                 VTDESVHTFQLDNDKYCIFVKFLSPVYIDKLLLKWGNEVEFTHRDNRKSKV
FT                 SIWRADIVYTTVRVLNLPIELDNEVIKDVLSQYGTIKSITNERWSRHYKLQ
FT                 CFNGIRSVEMEVKANIPSHIVVGGYRAQVVYSGQEPTCHICNESGHFRQDC
FT                 PRRVFVLKSNLKQRQRLTVSDVLQPSVLAQSDETENVANIASCSDVPLEDK
FT                 SQFPPLVKKPIIDSGHDSDVQSKKRPHANTDSCSDAELSDTPHSVRKQKQC
FT                 DEVISKRFSKRFRKRGDQQEIQQEVQKEVVSMEIDTQVSKTMLESESASGV
FT                 LSSNVPEPTAEAVGRTEQHSIVYKTVQQSFPDVPPTPEICPQEVYVSGTES
FT                 LVDKQGITIDNGKEKISKTENLKAELQPHDATRRKIKPQSNLNVQRTHVKS
FT                 KPGKDTTKSKNVRHDIVRRGSQNDLADEPNETXCCFDTHDKSPDPANNA"
FT   CDS           join(1735..2217,2196..2852,2824..5052)
FT                 /product="Tx1-5_LMi_2p"
FT                 /translation="MPQAYTITTININRIQSDLKIAALREFLYESGTDIAL
FT                 LQEVVIPKLTITGFVEYINVSHDTSVGTAILIREGIPVTTVERLESGRGIS
FT                 IQLFDLTLINIYAPSGSAHRTDRTQFFSEELIYLLRKNPQNLIMGGDFNCV
FT                 LNKRDQQPNFNYSAELKQLVKHIKTTSQTLNLQDVWEIKHPAFVQYTYIAH
FT                 NSCSRLDRFYISKNLESSLLTVETVPVYFSNHSSVKACLNLVVQPIHRFRN
FT                 QWHLNVSLLQETELEEMLTHAWVICLRAIGRYSTILEWWNRMAKPKLRRVL
FT                 MQYSAQRAKDIKQSIEYYYSLLRNLYDQASESSFRLVDIKKVKAKLLTIKR
FT                 KQMEGLKIKSKAKTASEDEMTSLYHLLKHARNREYPYSTPEIGSTLIEEIR
FT                 TTNGMILRSQKDIINEIHHYYEELYADNPVNEDSLVDCLGIMTSQLTENDN
FT                 EEILSEVSEDEVHXVVRTSPPRKSPGPDGLPIEFYARYWSLIGEKITAIAN
FT                 EILQGHTIPTEFKEAKIVLVPKTKENKMLNNFRPISLLNADYKIIARLLNR
FT                 RISSFANKIISVHQNCVVGRTIFQNIAEYRDIISITDVTRIKCALIFLDFH
FT                 KAFDLVNHTYLLKNMHKLGFHELSLRVIKNIATGIHARIAVNGQTTKQIEI
FT                 KRGVPQGSPLSMLLFAISLDPLLRNVHANLTGITMAGHKTVIRAYADDVGV
FT                 VVRSRNEISTLENVTRTYCQASGANINANKSKILKLRGFDHVNVDWATSVS
FT                 QQKTLGIVLMANVMKMAARNWKDAANKVQGAIMDNLSRHINQVQRVKYINL
FT                 WILSKAYYTAQVFPLPKMIAKKIMSKVTNFLWRGEVFRVTAKVATLDPSHG
FT                 GLGLVDITTKASALFVKRTMNIIQQQPGSITRKLFDVLKPSSLQPPIDVRN
FT                 INVCLQHVRTFYIEMSYVNHALLWSRHLTARAIMNERKKCERRNKIEDRSR
FT                 NVDWDAVWRNINLKGHSSDVITAWYKVVNNIIPTNERLCGIGINQTDLCQR
FT                 CNLVDTVIHRFTCGGNLNNWKWVRAQIALLTRTSPEYVSPSILCRPDARYF
FT                 PEKKNNAVYWLLGKYVSYVVNNLGPDTTIDFKLYMQDEYKKLSKYMDQKSK
FT                 YGNMLIIVFERMGIG"
XX
SQ   Sequence 5350 BP; 1864 A; 955 C; 1061 G; 1466 T; 4 other;
     gtatctttgg tgagcaaaat aaacaacacg gatttcggat agctttaaaa taaaataatt        60
     aaaagtatag gaataactag tatttaaaca gtgtttagtt ctgctagaac acgtgttttg       120
     cttcgtgttt acgtgtggtg ttttccattc tgctggtgat taacaggatt tcggtttatt       180
     tttaaccgga gttctcctgt tactggcatc atgtctacta atctacggaa gaatacactg       240
     gttttttcat ttgacaagga aacccgcaat gtgcagccga cgtcgctgga aattcacgat       300
     tggataactg aggtaatcgg tgttactgat gaatctgtcc atacttttca attagacaac       360
     gataaatact gtatatttgt caagtttttg agccctgttt atattgataa actgttactg       420
     aagtggggta atgaagtcga gtttactcat agagataaca ggaaaagcaa agtatctatt       480
     tggagagccg atatagttta tacaaccgta agagtgttga acctcccaat tgaacttgat       540
     aatgaagtaa tcaaggatgt acttagtcaa tatggcacca tcaagtctat tacaaatgaa       600
     cgttggtcga ggcattataa attacagtgt ttcaatggca ttcgttcggt ggagatggaa       660
     gttaaagcaa atattccgtc acacatcgtt gtgggtggtt atagggcaca agtagtgtac       720
     tcaggacagg aacctacgtg tcacatatgt aatgagtctg gacatttcag acaggactgt       780
     cctcggcgag tttttgtgtt aaaaagtaat ttaaaacaac gccagaggct tactgttagt       840
     gatgtgttac agccttctgt tctggcacaa tcggatgaga ctgaaaacgt agcaaatata       900
     gcaagctgtt ctgatgtccc tctcgaagat aagtctcagt ttccaccatt agttaagaag       960
     cctattattg actctggtca tgatagtgat gttcagtcga aaaaaagacc gcatgcaaat      1020
     actgacagct gttcagacgc ggaattatcc gacacacctc attcagtacg taagcaaaaa      1080
     cagtgcgatg aggtgatcag caagagattc agcaagaggt tcagaaagag gtagtgtcga      1140
     tggaaatcga cactcaagtc tcgaaaacta tgttggaaag cgagtccgca agtggggttt      1200
     tatcaagtaa cgtgcccgaa ccaactgcag aagcagtggg tcgtacagaa caacattcaa      1260
     ttgtctataa aactgttcag caaagttttc ctgacgtgcc ccctactcct gaaatttgcc      1320
     ctcaggaggt atatgtcagt ggtactgaat cattagttga taaacagggc ataacaattg      1380
     acaatggcaa agagaagatt tcaaaaacag aaaatctcaa agcagaattg caacctcacg      1440
     atgccacacg tcgtaaaata aagcctcagt ctaatctcaa tgttcaacgc actcatgtga      1500
     aatctaaacc tgggaaagac acaaccaaat caaagaatgt gagacatgat atcgtcagac      1560
     gtggatcaca aaatgactta gctgatgaac ctaacgaaac tcmatgctgt tttgatacac      1620
     atgacaaatc tccagatccg gcgaacaatg catagaactg ttagtttttc tgtttttgtt      1680
     ttgtttttca ttgmataact gataaagaga ccaggttaca aaagtgagta cgtcatgcct      1740
     caggcctata ctatcaccac tataaacata aacagaattc aatcagattt gaaaatagca      1800
     gcacttaggg aatttttata tgaatcaggg acmgatatcg cccttctgca ggaagtagtg      1860
     atccccaaac tgacaattac agggtttgtt gaatatataa atgtgtcaca cgacacgagt      1920
     gttgggactg ccattttgat acgagaaggt attccagtca caacagtaga acgtctagaa      1980
     tcaggaagag gaataagcat acagttattt gatttgactt taatcaacat atatgcccct      2040
     tcaggcagtg cccatagaac agaccgaacg cagtttttta gtgaggaact tatatatctg      2100
     ctacgaaaaa atccacagaa tctgataatg ggtggtgatt tcaattgcgt tcttaataag      2160
     agggaccagc aaccaaattt taattattct gctgaattaa aacaactagt caaacactga      2220
     atttacagga tgtgtgggag atcaaacatc ccgcatttgt acagtataca tatattgctc      2280
     ataattcctg cagtagactt gacagatttt acatttcgaa gaatcttgaa tcatctttgt      2340
     taactgttga aactgttcct gtatattttt caaatcactc cagcgtaaag gcctgcttaa      2400
     atctagtggt acaaccgatt catcgtttta gaaatcagtg gcatctaaat gtctcattgt      2460
     tacaagaaac tgaattagaa gaaatgttaa cacatgcatg ggtgatatgt ctgcgtgcta      2520
     taggtagata ttccacaata ttagagtggt ggaacagaat ggcgaagcca aagctgagaa      2580
     gagtccttat gcaatacagc gcacaaaggg ccaaggatat aaaacaaagt atagaatact      2640
     actacagcct gttgaggaac ctttatgatc aagcatcaga gtcctccttt cgtttggtgg      2700
     atataaaaaa agttaaagct aaattattaa ccataaaacg caaacagatg gaagggctga      2760
     aaataaaatc taaggctaaa accgcttcag aagacgaaat gacctcttta tatcatttgc      2820
     taaagcacgc cagaaatagg gagtaccctt attgaagaaa tccgaaccac aaatggaatg      2880
     atccttagat cacaaaagga cataattaat gagattcatc actattatga agaactctat      2940
     gccgacaacc ctgtaaatga agactctctt gttgactgct tgggaattat gacgtcacag      3000
     cttaccgaaa atgacaatga ggaaattctt tcagaagtca gtgaagacga agtccatgas      3060
     gttgtgagaa cctcacctcc aagaaaatct cctggacctg atgggctgcc tatcgagttt      3120
     tatgcacgtt attggtcact tataggagag aaaataacag ccattgcaaa cgagattctt      3180
     cagggccata caatacctac agaatttaaa gaagccaaaa ttgttcttgt cccaaaaact      3240
     aaagaaaaca aaatgttaaa taattttcga cctatttctt tgcttaatgc agattataaa      3300
     ataatcgcca gacttctgaa taggagaatt tcttcgtttg caaacaaaat cataagtgtg      3360
     catcaaaact gtgtagttgg taggactata tttcaaaaca tagctgaata tcgagatatc      3420
     atttcaataa ctgatgtgac tagaatcaaa tgtgcattga tctttttaga tttccataaa      3480
     gcatttgacc ttgtcaatca cacatacctg cttaaaaata tgcacaaact gggttttcat      3540
     gaactgtctc tccgcgtgat caaaaacatt gcaacaggga tacatgcaag aatagcggta      3600
     aatggacaaa caactaaaca aatagaaata aaaagaggtg ttccacaggg aagtcctctt      3660
     tccatgctct tattcgctat ttcacttgat cccttgcttc gcaatgtgca tgcaaatctg      3720
     acaggtataa caatggctgg ccataagaca gtaatcagag cttacgctga tgatgtagga      3780
     gttgtcgtcc gaagtcgcaa tgaaataagt acattagaaa acgtgactag aacatactgt      3840
     caggcttcgg gagcaaatat aaatgctaac aaaagtaaaa ttctgaaact gagaggcttc      3900
     gaccatgtaa atgtcgattg ggcaacctcg gtcagccaac aaaaaacatt aggaatagtg      3960
     ctcatggcca atgtgatgaa aatggcagct agaaactgga aggacgcagc gaataaagta      4020
     caaggggcca taatggacaa cctatcacgt cacataaatc aagttcagag agtaaaatat      4080
     ataaatttgt ggatactatc aaaagcttat tatacggcac aagtatttcc gctcccgaaa      4140
     atgatagcca aaaaaattat gtcaaaagtt acaaactttc tgtggagagg agaagtattt      4200
     agagtcactg ctaaagtagc cactctagat cccagtcacg gtggattagg ccttgtagac      4260
     ataactacca aagcatcagc actcttcgtt aaacggacga tgaacattat acagcagcaa      4320
     cccgggagca ttacaaggaa acttttcgac gttcttaaac cgtcaagtct tcaacctcca      4380
     atcgacgtaa gaaacatcaa tgtttgctta caacacgtga ggacctttta tatcgaaatg      4440
     agttatgtca accatgcact tttgtggtca agacacctaa cagcaagggc tattatgaat      4500
     gaaagaaaga aatgtgaaag aaggaataaa atagaagata ggtcaagaaa tgtggactgg      4560
     gatgctgtat ggcgaaatat taatctaaaa ggacactctt cggacgtaat aacagcttgg      4620
     tacaaagtcg tcaataatat aattcccacc aacgaacgac tctgtggaat cggtataaat      4680
     caaacagatc tatgccaacg atgtaatctt gttgatacag ttatacacag atttacctgt      4740
     gggggaaact taaataactg gaaatgggtg agagcgcaaa tagcactcct cacaagaact      4800
     tcacctgaat acgtatctcc gtccatacta tgtagaccag atgcaagata ttttccagag      4860
     aaaaaaaata acgcagtata ctggttattg ggaaagtacg tgagctacgt ggttaacaat      4920
     cttggaccgg acaccaccat tgacttcaaa ctatacatgc aggatgaata taaaaaactt      4980
     agcaagtata tggaccaaaa atccaaatat ggaaacatgc ttattatcgt atttgaacga      5040
     atggggatag gttaatatat atacatggac taattaatat aagtttttat cgatgcctac      5100
     aagaaaaaaa ctgaaagtgt tatgaaaagc ctaaatgcta aggttaaatt atttaaaaat      5160
     tgaactgcaa aatatgagta aatcaacatg ttgttttttt tatgattgtg tatgtgtgag      5220
     tatatcatta tgagtacctg tgtaaagtat tttacttgtg catatgtatc ctaagatgtt      5280
     ataattgatg ttcactatat acagtagaat gtacaagaaa tagagtaaat aaaatttatt      5340
     aaaaaaaaaa                                                             5350
//
ID   Tx1-6_AAe   repbase;    DNA;    INV; 4493 BP.
XX
AC   .
XX
DT   20-FEB-2012 (Rel. 17.12, Created)
DT   20-FEB-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon family from Aedes aegypti.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4493
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 12(12), 2721-2721 (2012).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           120..1139
FT                 /product="Tx1-6_AAe_1p"
FT                 /translation="MEPKRENTIKLRFGSHTRNPSNEEVFTFFKEQGWSCD
FT                 DLSAMYREDFSLFVRFQTEARVKDALIKLGKHVDFKYANGDKVQVSVSLAN
FT                 GTFRYVRIFGLPPEVKDEQIATVLAKYGTIHQMVRERYSVETGFPIWNGIR
FT                 GVHMEMVSEIPAQLHIQSIRARVFYEGLQHKCFVCGALDHLKAACPKRQSV
FT                 NARMKLSTEEVSGQRAAAACGSKEPGSFANVVVKGLLAQPDPMPGMVVLTK
FT                 NGSKPEELLGASNVNSVVVPAEPSAGESPSKPAVVESIEEGNGSKKRTRDL
FT                 KRVDSESSESDAVSRKQIIVPSDDSKLLVAQNRRSRSVTTKKKTNNRE"
FT   CDS           1160..4420
FT                 /product="Tx1-6_AAe_2p"
FT                 /translation="MNFICSVATINLNSTNTAVNRSLLKDFIYEHNIDIVF
FT                 LQEVSYNDFAFVSSHNALVNVSVDRKGTAILIRKSFSYSDFIFDPSGRILS
FT                 VVVNGVNYINIYAQSGSDKKRERDELFTEGLSVHLNKPGTVFTMLGGDFNC
FT                 ILDPKDSLGSTKNFSNGLKNLVELFSFKDVAKSLKSDRFTFHRNQSASRLD
FT                 RFYIPKEFVCNVSNCKTLPLVFSDHHCVILTLKVTKEQISSRGRGYWKVNP
FT                 SFLHCVETRNRFRAEYEKLKQRSSYTSDISAWWHYCFKPKARSFYKSESWH
FT                 LNQSNRSSKAVLSSKLFEYFNRQTAGEDVTNEIAITKSKLMDLEQSRLQNL
FT                 SAKISTSAITEDEKVTIYHLSKGIHRSNVFGLRLKNGNTLETDNSKIGSLV
FT                 HDHFSKLYKGTIDDSDLNRYENPLNSIVNTLPAEEVDDLVQEISEDELLRT
FT                 LKACNKKKSPGPDGLTYEFYLSNFEILKTELLRLYNAYLSGQIVPPKDFSD
FT                 GIITLIPKKGDLTNLDNHRPISLLNTDYKLFTKMICNRMQISVEKLVGPGQ
FT                 SACIPGRSCIENLKDVRRIMTKATESKRFKGLLLSLDLEKAFDKVDHAFLW
FT                 KVLGKFGFPDQLIQCIQRLYGKATSKILFNGFLTQEIQIRSSVRQGCPLSM
FT                 LLFVLYVEPLIRMIDQSVLGVLVYDKFLRVIAFADDVNIFLRNSEELDNVL
FT                 NIIAIFSKFSKISLNLKKSKFLRINNCRGGPFQVPETENLRLLGVTFKSSW
FT                 NDTVESNYEKLLGEMRHRIWQVSFRNMCLLEKVWYVNVFVLSKLWYLAQIF
FT                 PAKNLHLAKIKTIVGNFIWKNCIFRVDRRQLYRDTDSGGLGLIDPTEKCKA
FT                 LFVWNIIKNNDENCEVGEKYLLNFKHMSKLTRNGKEWITLIPQLDNGLDSV
FT                 KLLYRSFLSSQGFTPLVESLYPQIIWASRWKILGYSYLLAEDKSALFQLFN
FT                 DLVVNKLKKVQYGIGGVENAFCERCGCNEIDSNEHRIKMCSSSKEVRDWVC
FT                 SIIHNTLKVQFNDFEDILSWDFDLECPRQKTVSWLAVHYIAFCVQKHPKIS
FT                 LFVFKKSIREFRWNQKEKVKKIFGEYLNIC"
XX
SQ   Sequence 4493 BP; 1416 A; 774 C; 1005 G; 1298 T; 0 other;
     cagttcgctt tcagtcttcg tccgaatcag acgtgtttcg agacagtgaa agagtgctat        60
     tgtggatatt gtttcccttt tttttgtatc atagtagtgt ttagttagag gaacgaacaa       120
     tggaaccgaa acgagaaaat accatcaagc ttcgctttgg atcgcatacg cggaatccgt       180
     ccaacgaaga agtgttcacg tttttcaagg aacaaggatg gagctgtgat gacctgagtg       240
     ctatgtaccg agaggatttt agcttgtttg tgcgcttcca gacggaggca cgtgtgaagg       300
     atgcccttat taagctgggc aagcacgtgg atttcaagta cgctaacgga gataaggtac       360
     aagtatcggt gagtttggcg aacggaacgt tccgttatgt ccgcattttc ggtttgccgc       420
     cagaggtgaa ggacgaacag atcgctactg tattggcgaa gtacggtacc atccatcaga       480
     tggtccgtga acgatactct gtggagacgg gtttccctat ctggaatggt attcgaggag       540
     tacatatgga gatggtgtcc gagattccgg cgcaactcca tatccagagc atcagagcaa       600
     gggtcttcta tgaaggattg cagcataagt gcttcgtttg cggagctttg gatcacctga       660
     aagcggcttg tccaaaacgt cagagtgtga acgcgcggat gaagctttct acggaggaag       720
     tttctggcca gagagccgca gcagcctgtg gaagtaagga acctggatcc tttgcaaacg       780
     ttgtcgtcaa aggtctcttg gcacaaccag atcccatgcc gggtatggtg gtgctaacca       840
     aaaatggcag taaaccggag gaactattgg gtgcctctaa tgtgaacagc gtcgtggtgc       900
     cagccgaacc atcggccggt gaatctccca gcaagcctgc tgtggtagag tcgatagagg       960
     aaggaaacgg atcaaaaaaa cgtacacgtg atctgaaacg cgtggactct gaatcgtcag      1020
     agtctgatgc ggtgtcgagg aagcaaatca tcgtaccatc cgacgatagc aaactgctag      1080
     tagcacagaa ccgtaggtca aggtcagtca cgaccaaaaa gaaaaccaac aacagagagt      1140
     aggctaacct atactaacaa tgaattttat ttgttcagta gcaacgataa accttaacag      1200
     tactaacaca gcagtcaata ggagcctttt aaaagatttc atctacgagc acaatattga      1260
     tattgtgttc ttacaggaag taagctacaa tgattttgct tttgtgtcat cacacaatgc      1320
     attggtgaac gtaagcgtag ataggaaagg gacggcaatt ctaattagaa aaagcttcag      1380
     ctactcggat tttatattcg atccatctgg taggatttta tcagtagttg taaatggagt      1440
     gaactatata aatatttacg cgcagtcagg aagtgataag aagcgagaga gggatgaact      1500
     gttcacagaa ggtttaagcg ttcaccttaa caaaccagga actgttttca cgatgcttgg      1560
     aggggatttc aattgtattt tggatcctaa agattcgttg gggtcgacaa agaacttttc      1620
     taatgggttg aagaatttag ttgaactttt ttcttttaaa gatgtagcca aatcgctcaa      1680
     atcagaccgt ttcacctttc atagaaatca atcagcttca cgtttagatc gtttttatat      1740
     accgaaggag tttgtttgca atgttagcaa ctgcaaaact ttgccacttg tgttttctga      1800
     tcaccattgc gtgattttaa cgttaaaagt tacaaaagaa cagatatcat cacgtggccg      1860
     tggctattgg aaagttaatc ctagtttttt acattgtgtt gaaaccagaa accggttccg      1920
     tgctgagtat gaaaaactaa agcaaaggtc atcctatacg tcagatatta gcgcttggtg      1980
     gcattattgc tttaaaccaa aagcaagaag tttttataaa tcggagagtt ggcatttgaa      2040
     ccaatccaac cgatcatcga aagcagttct ttccagcaag ctttttgagt atttcaacag      2100
     acaaaccgca ggagaagatg ttaccaacga aattgctatt accaaatcca aactaatgga      2160
     tctagagcag agcagactac agaatttaag tgccaaaatt tctacaagtg caataacgga      2220
     ggacgaaaaa gtaacaattt atcatctttc taaaggaatc cacagatcaa atgtgtttgg      2280
     gttgagacta aaaaatggaa atactcttga aacagacaac tcaaagatag gttctttggt      2340
     acatgaccac ttttcaaagt tgtataaagg tacaatagat gactcagact taaatagata      2400
     tgaaaatccg ttgaattcaa tcgttaacac tcttcctgcg gaagaggttg atgatttggt      2460
     gcaagaaatt tctgaggatg aattgttgag gactctaaaa gcttgcaata agaaaaaatc      2520
     gccgggtcct gatggtttga cctacgagtt ttacctttct aactttgaaa ttttgaaaac      2580
     cgaacttttg cgattgtaca acgcgtactt gagtggacag attgtacctc caaaagattt      2640
     ttctgatgga attattactt tgattccaaa aaaaggagat ctgacaaatt tggacaacca      2700
     tcgccccatc agcttattaa atactgatta caagctcttc accaaaatga tttgtaatag      2760
     aatgcagata agtgttgaga aactcgtagg acccggacaa agtgcatgca taccagggcg      2820
     atcctgtatt gaaaacttga aagatgtgcg taggataatg actaaagcta cagaaagcaa      2880
     acggttcaaa ggtctactcc ttagtctcga cttggaaaaa gccttcgata aggttgacca      2940
     cgctttttta tggaaagtgc taggaaagtt tggttttcca gaccaattga ttcaatgtat      3000
     tcagcgttta tacggaaagg caacatccaa gattttgttc aacggattcc tgacgcagga      3060
     aattcaaatt aggtcgtctg tcagacaagg ctgccctctg agcatgttgt tatttgtttt      3120
     atatgtggaa cctcttattc ggatgattga tcaaagcgtg ctcggggtac ttgtgtatga      3180
     caaattcctg agagtgatcg catttgcgga tgacgtgaat atctttcttc gaaactcgga      3240
     agagcttgat aacgtgctga atatcatagc tattttttca aagttttcga agattagctt      3300
     gaatctgaaa aaatcaaaat ttttaaggat caataactgt cgtggtggcc cattccaggt      3360
     cccagaaact gaaaatttga ggttactagg agttactttc aaatcctcct ggaacgatac      3420
     tgttgaatcg aattatgaaa aattattagg tgaaatgagg catcgtattt ggcaagtgtc      3480
     attccgcaac atgtgcttat tggaaaaagt ttggtatgtc aacgtttttg ttttatcgaa      3540
     gttgtggtat ttggcccaga tttttcctgc gaaaaatctc catttggcta aaattaaaac      3600
     aatagtggga aacttcatat ggaaaaattg tatttttaga gttgataggc gacagcttta      3660
     tcgcgatact gatagtggtg gtcttggctt gatagaccca acggaaaaat gtaaagccct      3720
     ttttgtttgg aatatcatta aaaacaatga cgagaactgt gaagttggag aaaaatatct      3780
     tctaaatttt aagcacatgt ctaaattaac acggaatgga aaggaatgga taacactaat      3840
     accccaattg gacaatggtc tcgattctgt gaaactgctt tatcgatcgt ttctcagttc      3900
     acaaggtttc acacctcttg tggaatcatt atatccgcaa ataatttggg cttctagatg      3960
     gaaaatctta ggttattctt atcttcttgc tgaagataaa tcagcattgt ttcaattatt      4020
     caacgatctg gttgttaata aactgaaaaa ggtccaatac ggtatcggtg gggttgaaaa      4080
     tgccttctgt gaacgatgtg gatgcaacga aattgatagt aatgagcatc gtattaaaat      4140
     gtgcagctct tcgaaggaag tgagggactg ggtgtgtagt attatacata acacattgaa      4200
     agtacaattc aatgattttg aagacatctt aagttgggat tttgatttag agtgtcctcg      4260
     tcagaaaact gtgtcttggt tagcagtaca ttatattgca ttctgtgtac agaaacatcc      4320
     aaaaataagc ctgtttgtat ttaaaaaaag cataagagaa ttcagatgga atcagaaaga      4380
     aaaagtaaaa aaaatatttg gtgaatattt aaatatttgt taactaacgg tatagtatgt      4440
     aatatgtaat atgtggttta cttggagtat gtttaataaa taaataaaaa aaa             4493
//
ID   Tx1-6_CQ    repbase;    DNA;    INV; 4095 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-6_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4095
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 638-638 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 6 sequences with >99%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..670
FT                 /product="Tx1-6_CQ_1p"
FT                 /translation="YYDGLKNRCFHCKQEGHVKSSCPKLVTVSPGSGXPRS
FT                 YSSVAARGTPVAPPVLEVPAFKPQMQLLNSKRNQSVPTPAPPQVTVPVTEA
FT                 AISQREKVPADGAALPAVTPATSGSSVAGSSKTPAEILKVLQSIAKETEEP
FT                 MDTSLDKVAPKRPADPPSDGEGGVSEEGGSEEGGTAEGGDEGLGGSGVDAD
FT                 GFKKQGGKRSNKAKKSKKVIKTIETRADAKASK"
FT   CDS           761..4006
FT                 /product="Tx1-6_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MVFTRSICTININSISCIAKKLLLRDFIFNTDIDILL
FT                 LQEVAFESFGFLHSHTAIVNFNNDSIGTAILVRKGIEFSNVLMGSCGRILS
FT                 VSIDNFNIINIYAASGTNRKKERDILFSSTIIPHLSSVKNNIIAGDFNCIL
FT                 LSSDSNSTVPNFCKGLESLVKSVCLFDVEKEKNKSVQFTFIRGISMSRLDR
FT                 FYAPKDFLSKVLSVSTAAVPFSDHHAVLIKYQVPDGIPLKLFGRGFWKINP
FT                 SLIDNSDIHNKLITVLNDLETREMFSRDLNKWWNQTVKVKIKQTYKSESFH
FT                 LNQQIHREKNFYYTCLKEIIIEQSNGRHVYDEMIFIKSKLLQIEHDRLKNF
FT                 SLKIPPTSLASEETLSLFQISSSIKKNYSDNLLHLRTTKGITSDYKELKPC
FT                 IENYFTKIFANESSNNSNNNFPVLNNINKSLNLQDSNMLIRPISKDELNTI
FT                 IKQSAKKKSPGPDGLTYEFYEHFFDVLSDHLLKLFNSYLRDGVCPEPSFSE
FT                 GIIALVPKNGDQTDISNKRPISMLNCDYKIFSKILANRLHAVLPNLIGPGQ
FT                 AACNPEKSCIYNLRLIRNICLRAEQTKRLKGLILSIDLEKAFDNVSHDFLW
FT                 AVLKKYGFPNEFITCIQNLYKHASSKILFNGFLTNTILILNSVRQGCPLSM
FT                 ALFALYIEPLIRLIYDNVQGCFIANTFIKVIAYADDLNIFVLNDHEFDTVL
FT                 ELINYFSIFSKIKLNARKSHFMRLNNCRSGPHMLEEKMSLKILGIAFYQDF
FT                 SRTVDSNYNSIIPKFKNVLAQHSKRKLNLVQKCIVLNSYALSKIWYIAQIF
FT                 PPSNKHLADIRKSCGWFIWXNFFKVDRNQLYLPLEKGGLGLADPEVKAQSL
FT                 FVKNIIFAFNDDKDSFMLAQTRNKSLTRNARAWLDLASELSHFSYLDSCKS
FT                 FYNFLLQKRNTIPKVERENPEFSWEIIWENISKXXLSSYAKEALYMVYNNL
FT                 VPNRSKMFRLKVRGVVDNLCEICNNVDSTEHRIKNCKNTRPVWEWVEEIIS
FT                 KRLKLVVEDPEEIMQMSIVTSMKRKACLWLVAEVICFNLKNTNNATVKDFQ
FT                 HHIRKIRWNFREVFKKHFGNLLNIC"
XX
SQ   Sequence 4095 BP; 1404 A; 690 C; 772 G; 1223 T; 6 other;
     ttattacgat ggcttgaaaa atcggtgctt ccattgcaaa caagaagggc acgtgaagtc        60
     gagctgtcca aaactggtaa cagtctcgcc gggaagcggc gktccacgtt cttacagttc       120
     tgtggccgcc cgtgggactc ccgttgcgcc accggtactg gaggttccag catttaaacc       180
     acagatgcaa cttctaaaca gcaaacgcaa tcagtctgta ccgacaccag cacctccgca       240
     agtcaccgtt ccggttaccg aagcagcgat ctcgcagcga gaaaaggttc cagctgacgg       300
     cgcagcacta ccagcagtaa caccagcaac aagtggcagt tctgtggcgg gttccagcaa       360
     gaccccggcg gagattctga aggttctgca gagcatagct aaagaaacgg aggagcccat       420
     ggacaccagc ctcgacaagg tggcaccaaa gaggccagca gatccgccat cggatggtga       480
     agggggggtt tcggaagagg gggggtctga agagggggga actgcagagg ggggtgatga       540
     gggtttgggg gggtctgggg tagacgctga cggattcaaa aaacaaggag gtaagcgatc       600
     aaacaaagca aaaaaatcga aaaaagtgat caaaacgatc gaaacaagag cagatgctaa       660
     ggccagcaag tgagcgtaac ataacctcac ttgcgttccc gtagaacacg tggtgctgac       720
     agtcagttaa agttttttgt gcgtattggt ttgccggaag atggtcttta ctcgtagtat       780
     ttgtacaatc aacatcaatt ctattagttg tattgcaaag aaactattac ttagagattt       840
     tatttttaac acagacattg acatactttt gctacaagaa gtagcctttg aaagttttgg       900
     attcttacat tctcacacag ctatagttaa ttttaataac gatagtattg gtacagctat       960
     tcttgtgcgc aaaggtattg agtttagtaa cgtgttgatg ggatcgtgcg gacgtatact      1020
     atctgtgtct atcgataact ttaacattat taatatttac gctgcttcag gtactaatcg      1080
     caaaaaagaa agggatattc ttttttcttc aacgataata ccacatttat catctgtaaa      1140
     aaataacatt attgctggag attttaactg cattttactt tcttctgatt caaacagtac      1200
     agttccaaat ttttgcaaag gacttgaatc tttggttaaa tccgtttgtt tgttcgacgt      1260
     ggaaaaggaa aaaaataaat cagttcaatt tacattcatt cgtggaatat ctatgtcaag      1320
     actcgatcgc ttttatgctc caaaagactt tttaagcaag gttctgtctg tgtcaaccgc      1380
     agcagttcct ttctctgatc accatgccgt tcttattaaa tatcaggttc ctgatggaat      1440
     tccattgaaa ttatttggaa gaggattttg gaaaatcaat ccgagtttga ttgataattc      1500
     agacattcat aataaattga taactgtttt aaatgactta gaaacccgtg aaatgttttc      1560
     gcgagatttg aacaaatggt ggaatcaaac agtgaaagtc aaaattaagc aaacttataa      1620
     atctgaaagt tttcatttga atcagcaaat ccatcgtgag aaaaattttt actatacgtg      1680
     tttaaaagag attattatag agcaaagtaa tgggcgacac gtttatgatg aaatgatttt      1740
     tattaaatcc aaacttttac aaattgagca tgatcgttta aaaaactttt cgttgaaaat      1800
     acctccaaca tctctagctt ctgaagaaac tctctcgctt tttcaaatat catccagtat      1860
     taaaaaaaat tactctgata acttactaca tcttcgtaca actaaaggta ttacttcaga      1920
     ttacaaagaa ctaaaacctt gtattgaaaa ttattttaca aaaatttttg caaatgaatc      1980
     ttccaataat tcgaataaca attttccagt attaaataat atcaataaat cattaaactt      2040
     gcaagactcc aacatgttaa taagaccaat tagtaaagat gaattaaata ctattattaa      2100
     acaatcagcc aaaaaaaaga gtcccggtcc tgatggactc acatacgagt tctacgaaca      2160
     ttttttcgat gttttgagtg atcatttact taagctattt aatagttatt tgagggatgg      2220
     agtatgcccg gaaccaagtt tttcagaagg aattatagcc ttagttccaa aaaatggaga      2280
     ccaaactgac atttcaaata aaagaccaat tagtatgctt aactgtgatt ataaaatttt      2340
     cagtaaaatt ctagcaaaca gactacacgc agttttacca aatttaattg gacctggcca      2400
     ggcagcctgt aatccagaga aatcatgtat atataatctt cgtttaattc gcaatatctg      2460
     tctccgtgct gagcaaacaa aaaggttaaa aggtcttata ttaagcattg atttagaaaa      2520
     agcatttgat aatgttagcc atgactttct ttgggctgtt ctcaaaaagt acggttttcc      2580
     aaatgaattc attacatgca tacaaaatct ttacaaacac gcttcatcga aaattctttt      2640
     taatggattt ttaacaaata cgattttaat attaaattct gttcgacaag gttgcccttt      2700
     gagcatggct ctattcgcgc tgtacattga accactgatt cgtttgatat atgacaatgt      2760
     tcaaggttgt ttcatagcaa acactttcat aaaagtgatt gcttacgcag acgatctgaa      2820
     catttttgtt ttaaacgatc acgagtttga tactgtgctg gagctcatca actattttag      2880
     tattttttct aaaataaaat tgaatgccag gaaatctcat tttatgagat taaataactg      2940
     tcgttccggc cctcacatgt tagaagaaaa aatgagctta aaaattctgg gaattgcttt      3000
     ttatcaggac ttttctagaa cagtagatag taattataat tcaatcatac caaaatttaa      3060
     aaatgtatta gcacaacatt caaagcgaaa attaaatcta gttcaaaaat gcatagtgtt      3120
     aaactcctac gctttgtcca aaatctggta cattgcccag atatttccac cctcgaacaa      3180
     acatttggca gacattagaa aaagttgtgg ttggtttata tggamcaact ttttcaaagt      3240
     agatagaaat cagctctatc ttccattaga aaaaggtggg cttggattag cagatccaga      3300
     agtaaaagcg caatcccttt ttgttaaaaa tataattttt gcatttaatg atgataaaga      3360
     tagctttatg ttagcacaaa cccgtaataa atctcttact agaaacgcac gagcatggct      3420
     ggatctcgcg tcagagttgt ctcattttag ttatttggat agctgtaaat cattttataa      3480
     ctttctttta caaaaaagga atactattcc taaagttgaa cgtgagaatc cagaattttc      3540
     atgggaaata atttgggaaa acattagcaa aaawwtttta agttcctatg caaaagaggc      3600
     gttatacatg gtgtataata atttagtccc aaatagatca aaaatgtttc gtttaaaagt      3660
     tagaggagtt gtagataacc tttgtgagat ttgtaataat gttgacagta cagaacacag      3720
     gataaaaaat tgtaaaaata ccaggccagt ttgggaatgg gtggaagaga ttattagcaa      3780
     gagattgaag ttagtagtag aagatccaga agaaatcatg caaatgagta tagtaacatc      3840
     aatgaaaaga aaagcatgtt tatggctagt agcagaagta atttgtttca atcttaaaaa      3900
     taccaataac gcaacagtaa aggactttca gcaccacatt agaaaaatca ggtggaactt      3960
     tcgagaagtt ttcaagaaac attttgggaa tctgcttaac atttgctaag atcgctattt      4020
     tttgttgtaa aatatctccg taaaataaag acaatcatgt gaaaaaaaaa aagggggggg      4080
     awaaaaaaaa waaaa                                                       4095
//
ID   Tx1-6_LMi   repbase;    DNA;    INV; 5805 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5805
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3486-3486 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1610..3187,3124..3768,3753..4172,4297..4800)
FT                 /product="Tx1-6_LMi_1p"
FT                 /translation="MEQDYNVTTLNINKIQNATKMTALKDFLYQSDTDIAL
FT                 LQEVQIKDLYISGYKTLVNVAPEHNCGTAILAKDGIEVNDVCLLESGRGIR
FT                 CKIFNTNVINIYAPSGNNLRAERARFYKSDILHLLKDNPANVLIGGDWNCV
FT                 LNEKDQRPNFNKSRELEGLVTNMKWKDAWEIKYPTLVRFTYITSRSQSRID
FT                 RIYVSSNFENKIAAIEVIPTIFSDHLAVKCSVKLAKQKTYWGRSLWKXNTS
FT                 MLLENELNQQIEDAWQASLRQRHKYRSTVQWWVTVAKKKLRATLISYGKER
FT                 MRWTRHTMEFYYSCLRDLYGQPMTDDILXQINRTKAKLINMKSTQLEGLKI
FT                 KSHEQTIVEEENASVYHLIRHEQQRRRNFIEHLRAEDKRILSNQKDILDEA
FT                 YRFYNTLYSEKEIEETVTREFLFTSGLADAITEEDNRNLQVEITQEDVLDV
FT                 IKSSPTKKSPGPDGLPIEFYRSYWHIIGNKFTEMINEVVNGEPVPPDFKQS
FT                 ITVLIPKGRNTEIKDINKMRPISLLNSTTKEYGNKGYQQNETNKFTQLDYK
FT                 IIARVIKDRLTPILGKIIGYHQTCLSGRSIFKTVSEYRDIVSIFSNTTXHG
FT                 GLVFIDFTKAFDRVNHAYLFRTLEFMGLNVNNLKVLTNILTGMKTNVSING
FT                 HYTKDIPIAGGIPQGSPLSMMLYVVALEPLMRRLEDALEGISVSGMKRVCN
FT                 AYADDVGVIIRNNDDAARXTENVYLYSQATGAQVNETKSAFNKECFLKLNG
FT                 LTDVQIAWAKCVEQHTVLGLTLHSCPLRTIASNWKTILGKIRGSLILNYMR
FT                 DLNIKQKIKIINCAVLSKATYIGQVLPIPKDIAKAIMATVCRYIWHGQIFR
FT                 VAVGTVTLTVEEGGLGLTDIRKKTTFYLIYSRIFLELSYLQDIAWDKNKQN
FT                 CKYFLERMRSKDNQNKMEVKNPNKNWKNIWKNISNKILTTDIQXAWYGVVN
FT                 NIISTNEKLYSIGLSDTSRCSKCHGIDTLEHRFTCKGLAEIWQDVKNQVAF
FT                 LRRSDGRDINPNVIFFPEEIYLPSSKKQCYRMATRTLCYLHHQ"
XX
SQ   Sequence 5805 BP; 2003 A; 1093 C; 1300 G; 1387 T; 22 other;
     cgagtggcag ccgcggtgcg ggacggacgc gtggcggcag ctggcgttcg cgaagtaaca        60
     acggctgagt cgctgtgttt aaggttagtt gtaaccgctt tgcttgctaa ttgtggctgt       120
     gtttatagaa aaagcagaca gaatgagcag aactttcgac agatgtcagt aaacatgagc       180
     aaagatagag tgacgtaata ggtgtatatt tgtcctttgt aacgaatgct gcgttcatga       240
     aactgaaaag tcctgaacta tgttgttcaa tagtagataa gtttggcggt ataatgaagt       300
     tcaatcattc tgacggtagt gtgagtgacg ttcctgtctg tcacgctggt ttagggattc       360
     ggacggtccg ctttttaact tcctcttgaa atgccggtcg aggaaatcaa caaagttttc       420
     ggccctacgg cagaataatt tccaacatcg ccgagaagtg tcagagccca tatgtttcca       480
     gtgttgaacg gcgtcgacaa gtgaagataa gcttataagc acataccctg tacataaatg       540
     tgtgcggcac cgtgctttag tatgcgacgg acagcccaga actgcgccct gtgcaattcc       600
     acggagcaca tcaggagcga gtgcagcagg aggcgcgtcc cgcagctgcc ggccaggcgg       660
     tcagcctcaa gctgacgtac gctgccgccg cgtacccgcg cggccccgct gggcaggagg       720
     aagtggccgc cgcaccggcc gagccagtaa acaacagagc cgagccacgt agaggaagcc       780
     aagaccagcg acgcgagccc cccagctgcg gaaaacggtg acaaaccttg tgaagcagat       840
     gtcctatcaa tgtgcaggcg acgactttgc caacacagaa actggaagtg gacggcgctc       900
     ttcggttata caacatgaag agacaacgac ttccgaaata tccgcaatgg atttcgagga       960
     agagtcaggc agtcagacgc agtccataga aggccaaagt gggaaggaaa accaaagtac      1020
     gcagaaggac ggcaaaggga aagaactcca gattaaaatg ccacacagaa agatttaaat      1080
     actgagttga aaaatggcaa tccaaaacgg attccagata aagaacaagt ttatctgaga      1140
     gatcctcggc ggattcccaa gacaaatcac ctgagtcatc caacggggga tcsccaaagc      1200
     gaagaaggaa caaaaagcgt aggttggctc acgaagccgc agggaaaatt gccccccttc      1260
     tacaggaaaa actaaaaccg tcaaagaaca caaaagcaaa aagacgactc acaggcagca      1320
     cagacttcaa cggatctccc tccaggaaac agaagagaag aaactgaaac aacactgaag      1380
     tggacagaga cgaacccttc ttaagtccag gcacttcaga ggcgcgatta gattggacaa      1440
     aggagacaga tgaagaaatg gaagatgcgt tatacmagaa gaagatgatt tttactaaca      1500
     gtttgaatgc aacattgtag acaaacagaa agaagataga gaaaaggaga wacttasaaa      1560
     aagaaatata actgtcctca actattaacc actttctcgc ataccaccaa tggaacaaga      1620
     ttataacgtg acgactctca atataaacaa aatacagaac gcaactaaaa tgaccgccct      1680
     taaagacttt ctgtatcagt ctgacacaga tatagcgcta ttgcaagagg ttcaaatcaa      1740
     agacctatat atctctggtt ataaaacact cgtaaatgta gcacctgagc acaactgtgg      1800
     aacagctatc cttgcaaagg atggaattga agtaaacgac gtctgccttt tagaatcggg      1860
     gaggggtatc aggtgcaaaa tttttaatac aaatgtaata aatatttatg caccatcggg      1920
     caacaattta agagcagaaa gggccaggtt ttataaaagt gatattctcc atttactwaa      1980
     agacaaccct gcaaatgttt taataggagg tgactggaat tgcgttttaa atgaaaagga      2040
     ccaacgtcct aatttcaata aatctagaga acttgaaggc ttggtaacaa atatgaaatg      2100
     gaaagatgca tgggaaatca aataccccac cctcgttagg tttacttaca ttactagtag      2160
     atcgcagagt agaatcgaca gaatttacgt ctcatcgaac ttcgaaaata aaatagctgc      2220
     aatcgaagtt atacccacta tattctccga ccaccttgca gtcaaatgca gtgtaaagtt      2280
     ggcaaaacag aaaacgtact ggggtagatc actgtggaaa tkaaacacaa gtatgctgtt      2340
     agagaacgag ctaaatcaac aaatagaaga tgcctggcag gcctctttaa gacaacgtca      2400
     caaatatagg tcaactgtcc aatggtgggt tacggttgcg aagaagaaat tgagagccac      2460
     tttaatatca tacggcaaag agagaatgag atggactcgg catacaatgg aattttatta      2520
     ctcctgctta cgcgacctat atggacaacc aatgacagat gatattttaa wgcaaataaa      2580
     tcgaacaaaa gcaaaactaa taaatatgaa gagtacacag ctagagggct tgaaaattaa      2640
     atcccatgag caaactattg tagaagagga aaacgcttca gtatatcacc tcatacggca      2700
     tgaacaacag aggagacgaa atttcattga acacctgcga gcggaggata agagaatctt      2760
     gtcaaatcaa aaagatatcc tggatgaggc ttatcgattc tacaacactc tttacagtga      2820
     aaaggagata gaagaaactg tgacaagaga atttttattc acatctggac ttgcggacgc      2880
     aataacggaa gaggacaatc ggaatctgca agtagaaatt actcaagaag atgtcctaga      2940
     tgtcattaag tcatctccga ctaaaaagtc accaggccct gacggattgc ccatagagtt      3000
     ttatagatca tattggcata taatagggaa caagttcact gaaatgataa atgaagttgt      3060
     gaatggggaa cctgtccctc cagatttcaa acaaagtatc actgtgttga ttccaaaggg      3120
     taggaatacg gaaataaagg atatcaacaa aatgagacca ataagtttac tcaactcgac      3180
     tacaaaataa tagccagagt aattaaggat aggttaacac caatcctagg gaagatcatt      3240
     gggtatcacc agacatgtct ctctggacgc agcattttta aaaccgtaag tgaatatagg      3300
     gatatagtct ccattttttc gaacactact gmacatggtg gcctggtttt tatagatttc      3360
     acaaaggcct ttgatagggt taatcatgcc taccttttta gaaccttgga attcatgggc      3420
     ctcaatgtca acaatctgaa agttttaaca aacattttaa cgggaatgaa aacaaatgta      3480
     tctataaatg gtcactatac aaaggatatt ccaattgctg gtgggatccc ccaggggagc      3540
     ccattgtcca tgatgctcta tgtagttgcc ttggaacctc tgatgcgacg gttggaagat      3600
     gcactggagg gtatatctgt ttccggaatg aagagggttt gcaatgcata tgccgatgac      3660
     gttggtgtga ttatcaggaa taatgatgat gctgcaagaw taacagaaaa tgtgtacctt      3720
     tactctcaag caacaggtgc acaagtaaat gaaacaaaga gtgcttttta aaacttaatg      3780
     gactgaccga cgtacagatt gcctgggcaa aatgcgttga acaacatact gttttgggtc      3840
     taactctcca tagttgccca cttcgaacaa tagcctccaa ttggaagaca atactaggca      3900
     aaattcgcgg ctctctcata ttaaattaca tgagggatct caatattaag caaaaaatca      3960
     aaataattaa ttgtgcggtt ttatccaaag caacatacat tgggcaggtc ttacctatac      4020
     cgaaagacat agcgaaagct ataatggcaa ccgtttgccg ttacatctgg cacggtcaaa      4080
     tatttcgagt ggctgtcgga acagtgactt taactgtgga agagggggga cttggtttaa      4140
     cagatattcg gaagaaaacc acgttttatt tataaagagg accctgcaac tttttgataa      4200
     atatccaagc agtataacgg caaagttgtt caaattgttt gagccaaaaa gctttcagcc      4260
     acctgtcaac atcattaata tcaactataa atttaaatat attcgagaat ttttttagaa      4320
     ctaagctact tgcaagacat tgcatgggat aaaaacaagc agaactgcaa gtattttctc      4380
     gaaagaatga gatccaagga caaccaaaac aaaatggagg ttaagaaccc caacaaaaat      4440
     tggaaaaata tctggaagaa tataagcaat aaaattctta caacggatat acagkctgca      4500
     tggtacggag ttgtaaataa tattattagc acgaatgaga aattatattc aataggcctc      4560
     agtgatacaa gcagatgttc aaaatgccat ggaatcgata cattagagca tcgctttact      4620
     tgtaaaggat tggcagaaat atggcaggat gttaaaaacc aagtcgcctt cctaagacgg      4680
     agcgatggga gagacattaa tccaaatgtt attttcttcc cagaagaaat ttatttaccc      4740
     agctcaaaaa aacaatgcta tcgtatggct actaggacat tatgttacct acaccatcag      4800
     taacaagggg actgattgtc tacaggaata tagagaatat gtacaaagag aatattataa      4860
     aatttaccag aggaaagatc atttgaaaaa ctttggtaac atgttgcgaa ttgtgttcaa      4920
     gaagcaggga gtaggatgaa tggatttcgg cggtaggtgc ttgctaaagt aggggattgc      4980
     tgctgagggt gaagtacggt ggggacttcg tgggccccgt ggccgctcgg tagccgtgaa      5040
     ggcctcagca gaaccctgaa acagctgcca gtggcgacag agatttataa ggttgaaaat      5100
     aaattcacaa tgttcatact aagataackt tgataaattt agtatagatt gaaaggtgat      5160
     aaaaatcagt tatctccgca agtagtacct tttcttwttt mtacatttat ttcgtgtgtg      5220
     aggtgctttg ctcacattga gacaaacatt gtgaggctaa ataagaactc cataggagag      5280
     gcaatttgtt tttagaatag cctgatttta caatgwaagg atttttttta ttttaactcc      5340
     ttagtaagaa accccacaaa aactactaat maacaaaatg attcgaacaa caggtttgct      5400
     ttccggaacc gaaggctctc gaagttatga gaagacgaaa taaggttgat gctgaaatgc      5460
     taagaasgaa gaacggaaca ggacaatcac aaagattgtg gaactatctg catttggcag      5520
     caaactatga gaagacgggc ttcggagctt ccttggactg gaataacaac cgagaaaaaw      5580
     aaatcagcac agcatctgac aggttcawaa tcmagcgtga gagacaaatc agttwcagtg      5640
     agaamataaa ttttctttac ttttattttc aagaatttat wtatagctgt gaagctttaa      5700
     cattattctc aagcagaagg ctaatgaaag cctacgccga tgaaggcgac aaatggcgag      5760
     tgcaaggacg ggctataagg ggagatggga ggcccgaaaa aaaaa                      5805
//
ID   Tx1-7_CQ    repbase;    DNA;    INV; 4984 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-7_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4984
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 639-639 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >98%
CC   identity.
CC   3' end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           155..1501
FT                 /product="Tx1-7_CQ_1p"
FT                 /translation="MATFEEARANSLRIYFGPGKKEPLDHGIFNFMKQKMR
FT                 LNPNSLLSMYKESKENCVYIKFKTEEMLTNTLLDLPESMDFEYNKYESTKV
FT                 TFSSASTVFKYVRIFNLPPEISDQEISTVMSKFGVIQRMVRERYAPETGFP
FT                 IWSSVRGVHMEIKQDIPATIHVRNFQARVYYDGLQNKCFICGSKDHVKVNC
FT                 PKKSKVNXRMEQNGSLSYSAVTAQPPLWLGRGSTHKAGESGGEGQMVVLNN
FT                 FFGPAKPSLLVPXKLPEVPSAVKPIDQAGLGSSSVEQIVLPMSEPDAEMKE
FT                 TTTAEGVLTGGGVSSLAVPIVTDGAVKEAQGEEEFQLVQGRKKKRKEEMRS
FT                 LSADAPAKPGSGMIFIPPSNLSAAQSMETRGRSKKKEDNKERSRSRSLRDR
FT                 DTEGKGDTRGKGDVKGKGDVKGKGDTRGKGDVKGKNKLGGNGEGEGVDANL
FT                 EENL"
FT   CDS           1638..4895
FT                 /product="Tx1-7_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MNFTLKIASVNLNSTTTTINQNLLRDFIWNQDIDLVF
FT                 VQELCYQNFSFIPSHFAIINLNQNGMGTGILLRKSFEFNNVVLDPNGRISS
FT                 LVINGINYINIYAFSGTNKKKERDELFLNNLTVHLSKSGIEYSVLAGDFNC
FT                 ILNSSDATGATKNVSAGLKRLVESLQWKDIFAEMKQNEFTFFRSGVASRLD
FT                 RIYGPSRFVDLIIEAKTISVPFSDHCAIVLKIKTDSNSFCLKGRGYWKINN
FT                 SLLFDENISHKLSVEYQSICNRSSYFNDKNQWWNSIAKVKFKQFFKGESWA
FT                 INKYILDRKSYFHGVLNDLHRRRCLGEEVSKDMFLVKSRLMEIELDRLKHY
FT                 SNKLNNFSLLQGEVMNIFQVSAQIKKFSTSNNLKLKDGNVITGDCSIMKQI
FT                 IFDHFSEQFKKSLDNALDGITDPLEGVTSRLSDEQQRELTRPITVDEMFTV
FT                 LKLCAHKKSPGPDGLNYEFYLKHFDLIKDDLVVLFNEYLSGTKKPPRDFTA
FT                 GIITLIHKGNDKNDLNNYRPISLLNCDYKLFTKIIAMRIKLHLDDLLGCEQ
FT                 SACKSDRSCSDNLKDIRRIMLRANDSKRFKGALVSIDLQKAFDKVDHTYLW
FT                 KVLEKFNFPDSLISCIRNLYDSATSKVLFNGFLTNSIKIESSVRQGCPLSM
FT                 ILFVLYIEPLLRKISDGIAGVLIYDKFIKTIAYADDINIFIRNDEEFDLLI
FT                 QILNSFESFGKIKMNFNKSVYLRINRANFGPQMIREVNSFKILGIHFSNSI
FT                 SESINLNYDKVILNVKHTLHLHGVRKLNLVERGWLLNAFILSKFWYLAQIF
FT                 PPYKKHIDIINSLVGQFLWNGFIFKTARDQLYLDYDAGGIRLVNAEFKMKA
FT                 LFIRNILYPGGNVSENYILVYSKQHQLPLCFRQWIEVARLCKNDSLLDSSK
FT                 AFYKHFLNQENFIPKVKVDFPQFQWTTIWKNLNFNFIGSDEKSRLFAFLNN
FT                 LIPNKEKLMAYNIGRLSNNLCDICNGIDNNGHRIMECPQSRIISNWTKNKV
FT                 EKISGIKLVNLEDILSFEIDENKKSEIAALWLCILAISFNLKCYPGPSLFV
FT                 FKKEIREMRWNNRLIFNKVFGTHLLRLGM"
XX
SQ   Sequence 4984 BP; 1610 A; 745 C; 1106 G; 1516 T; 7 other;
     cagttgatgg ccagacttca agccgaacgg tcgatattgt ctttgcggtc taatagttga        60
     gacaacgttt tgttgtagct caggctactc tgcccgggtg ttttgttctt cgagaacaat       120
     agtatttagt tttaaaatcg gaacagtgcg gaaaatggcg acttttgagg aagcacgtgc       180
     caactcgttg aggatctact ttggccccgg gaagaaggaa ccgctggatc atggaatttt       240
     caatttcatg aagcagaaga tgagattgaa cccaaattca ctcttgtcga tgtacaagga       300
     atcgaaggag aactgcgtgt acattaagtt caagacggag gaaatgctga cgaacacctt       360
     gctggacctg ccggaatcga tggactttga gtacaacaag tacgagtcga caaaggtgac       420
     cttctcatcg gcatcgacgg tttttaagta tgtccgaatt ttcaacctgc caccggagat       480
     cagcgaccag gagatttcga ctgtgatgtc taagttcggm gtcattcagc ggatggtcag       540
     ggaaaggtac gcccctgaga ctggcttccc aatctggtcc tcagtccggg gagttcatat       600
     ggaaatcaag caggacattc cggccaccat acacgtgcga aacttccaag cgcgtgtgta       660
     ctacgatgga cttcagaata agtgtttcat ttgcggcagc aaagatcacg tcaaggtcaa       720
     ctgcccaaag aagtcgaagg tcaaccawcg gatggaacaa aacggaagct tgtcgtacag       780
     tgcggtgact gcgcaaccac cgctctggtt gggtcgagga tcgacgcaca aggcaggaga       840
     gagtggagga gaagggcaga tggtcgtgtt gaacaacttt ttcgggccgg cgaaaccgag       900
     tttgttggtg ccgmcgaagt tgcccgaggt accgtcggct gtaaagccga tcgatcaggc       960
     cggactcggc tcgagcagtg ttgagcagat cgttctccca atgagtgagc cggacgcaga      1020
     aatgaaggag acaacaacag ccgaaggagt tcttaccggc ggcggcgtat cgtcgttggc      1080
     agtgccgatc gtgacggatg gtgcggtgaa ggaggcgcag ggtgaagaag agttccagct      1140
     agtgcaaggt cgtaagaaga agaggaagga ggaaatgcga tcgctttcag ctgacgctcc      1200
     agcaaagccc ggatcaggta tgatttttat cccaccgtct aacttgagtg cagcgcagag      1260
     catggagacg cggggtcgtt caaagaagaa agaggacaac aaagagagaa gccgatcacg      1320
     tagtttgagg gacagggata cagaggggaa gggggataca cggggaaagg gggatgtaaa      1380
     ggggaagggg gatgtaaagg ggaaggggga tacacgggga aagggggatg taaaggggaa      1440
     gaataaattg ggggggaatg gggaggggga aggggttgat gccaatctgg aggagaatct      1500
     ttgaaaaatg gagttagtca ctatgggttt gtttcggatt ttggtcatat aagtagctat      1560
     attttacatt caatttagaa taggttagct ttatggtagg attagttaga tttattttgt      1620
     tcttttaatt ttatacaatg aactttacac ttaaaatagc gtctgtcaat ttaaacagta      1680
     caacaactac tatcaatcaa aatttattaa gagattttat ttggaatcag gatatagatt      1740
     tagtttttgt tcaggagctt tgctatcaaa atttttcttt tattccttct cattttgcga      1800
     ttatcaattt aaatcaaaat ggtatgggaa ctggcattct gttgcggaaa tcgttcgaat      1860
     tcaacaacgt kgttcttgat ccgaatggta gaatatcttc tttagttatc aatggcatca      1920
     attatattaa tatttacgca ttttcaggaa ctaacaaaaa gaaagaaaga gatgagctat      1980
     ttttgaacaa tttaactgtc catttgagta aatccggtat tgaatattcc gttctggccg      2040
     gggattttaa ttgtatttta aactcttccg atgctacagg agcaacaaaa aatgtgtctg      2100
     cgggcctcaa acgactcgta gaatcacttc aatggaaaga tatttttgca gaaatgaagc      2160
     aaaatgaatt cacctttttt cgatctggag tcgcttcgcg acttgatagg atttatggac      2220
     cgtcgcgttt tgttgatttg attatagaag ctaaaacaat atcagttcct ttttctgatc      2280
     attgtgctat tgtgttaaaa attaaaacag attcaaactc attttgtttg aaaggaaggg      2340
     gctattggaa aattaataac agtcttcttt ttgatgaaaa tatctcacat aaacttagtg      2400
     ttgaatatca atcaatctgt aacagatcat cttatttcaa tgataaaaat cagtggtgga      2460
     actcgatagc taaagttaaa ttcaaacaat tttttaaagg ggagagctgg gcaattaata      2520
     aatatatttt agatcgtaaa agttattttc atggagtttt gaacgattta catcgtagaa      2580
     gatgtcttgg ggaagaggta tccaaagata tgtttttagt taagtcacgt ttaatggaaa      2640
     ttgaattaga tagacttaaa cattatagta ataaattgaa taatttctca ttgttacaag      2700
     gggaggttat gaatattttt caagtttctg ctcaaattaa gaaattcagt acgtcaaaca      2760
     atctcaaatt aaaggatggt aatgtgataa caggggactg ctcgattatg aaacaaatta      2820
     tttttgatca tttttctgaa cagttcaaaa aatctctgga taatgcacta gatgggatca      2880
     ctgatccttt agaaggtgta accagtcgct tatcagatga acagcaaaga gagctcacaa      2940
     gaccgattac agttgatgaa atgtttaccg ttttaaaatt atgtgcacat aaaaaatcac      3000
     cagggcctga tggtttgaat tacgaatttt atttaaaaca ttttgattta attaaggatg      3060
     atttggtagt attgtttaac gaatatttat caggaacaaa aaaacctcct agagatttta      3120
     ctgctggtat tattactctt atacataaag gtaatgataa gaatgattta aataattata      3180
     gaccaattag tttacttaac tgtgattata aattattcac taaaattata gcaatgcgca      3240
     taaagttaca tcttgatgat ttactaggct gtgaacagtc tgcatgtaaa tcagatcgat      3300
     cttgctcgga caatttaaaa gatatcagac gaattatgct tcgtgcaaat gattcaaaac      3360
     gttttaaagg agcattagtt agtattgatc ttcaaaaagc tttcgataaa gtagatcata      3420
     catatttatg gaaagttttg gaaaaattta attttccaga tagtttgatt agttgtattc      3480
     gaaatttata tgattctgca acgtcaaagg ttctgtttaa tggttttttg actaatagta      3540
     ttaagattga atcgtcggtg cggcaagggt gcccacttag catgattttg tttgtattgt      3600
     acatcgagcc acttttgaga aaaattagtg acggcatcgc aggtgtactt atttatgata      3660
     agttcataaa aaccattgct tacgctgacg acataaatat ttttataagg aatgatgagg      3720
     aatttgattt gttaatccaa attcttaatt ccttcgagtc atttggaaaa attaagatga      3780
     attttaataa gtcagtttac ttgagaataa accgtgcaaa ctttggwcca caaatgatca      3840
     gggaagtaaa tagttttaaa attttaggaa ttcatttttc aaatagtata tctgaatcaa      3900
     ttaatttaaa ttatgataaa gtgattttaa atgttaagca tacgctccat ctccatggtg      3960
     ttagaaaatt aaatttagtg gaacgagggt ggttattaaa tgcttttatc ttatcaaagt      4020
     tttggtatct tgcgcagata ttcccaccgt acaaaaaaca tattgatatt ataaattcac      4080
     tagtagggca gtttttgtgg aatgggttta twtttaaaac agctcgcgat caactttatt      4140
     tagattatga tgcaggaggt ataaggttgg ttaatgcgga gtttaaaatg aaagctttgt      4200
     tcataagaaa cattctttac cctggaggaa atgtttctga aaattacatt ttagtatatt      4260
     caaaacaaca ccaactgccc ttgtgtttta ggcagtggat cgaagttgct agactttgca      4320
     aaaacgattc tttattggac agttcgaagg ctttttataa acattttttg aatcaggaaa      4380
     acttcattcc aaaagttaaa gttgattttc cacaatttca atggacaaca atttggaaaa      4440
     atttaaattt taatttcatt ggatctgatg aaaagtcaag gctttttgct tttttaaata      4500
     atttaatacc aaacaaggaa aaactaatgg cctacaacat cggaagattg tcwaataatt      4560
     tatgtgatat ttgtaatgga attgacaata acggacacag aataatggaa tgccctcaat      4620
     ccaggattat ttcaaattgg acaaagaata aagtagaaaa gataagtggg ataaaattag      4680
     tgaatctaga agatattctg tcatttgaga tcgatgagaa caaaaaatca gaaatagccg      4740
     ctttgtggtt atgtattcta gcgatttctt tcaatttgaa gtgctaccct ggacctagct      4800
     tgtttgtttt caaaaaggaa atacgtgaaa tgagatggaa taacagatta attttcaata      4860
     aagtttttgg aacacatttg ctaaggttag ggatgtagga cgagagagtt aggaaagtaa      4920
     aatattgtaa actgtaaact gtatttactg tgtttgacca aaatgaccgt aacaataaac      4980
     gttt                                                                   4984
//
ID   Tx1-7_LMi   repbase;    DNA;    INV; 4913 BP.
XX
AC   .
XX
DT   14-MAY-2014 (Rel. 19.12, Created)
DT   14-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-4913
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3487-3487 (2014).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           768..1469
FT                 /product="Tx1-7_LMi_1p"
FT                 /translation="KECPRTISQRLDRLSQIGNVTYAQKLADTPTQSVVLP
FT                 VPSTVEQAAVNNTVRGREAAASSENTXGRGEGANEMHDTADRHAIQYTPPS
FT                 EQTEVDRTRTQSNSQIVSVNXVTETAVLSSTAGTPAEGDKETRKDNISTEX
FT                 STXVKEXXKQQTAKPKRTRKQELDVKQELTRKLERTKKILKTEXIAVESIE
FT                 KRLHHVDNEDVKMNSEGEILEPMDTVDNNLIDKSTLWSDDTGQE"
FT   CDS           join(1530..2414,2491..3264,3249..3575,3714..4730)
FT                 /product="Tx1-7_LMi_2p"
FT                 /translation="IDVKIKCLQDYLYAADVDVAMIQEVVTHKIVNIFGYD
FT                 VILNIGQDCGTALMYKMGIPCQAQSILESGRGIAAKIQDLLLVNIYAPTGS
FT                 KGKRGRGNLFRDEIVHLLTDTRHIILGGDFNCVLRPEDQDPNFNFCEELSV
FT                 LTTGLDLIDTWIHLRPHSIGYTYVSSTSKSRLDRIYVSKTFTQNVVECEIW
FT                 PVSFSDHCAYHITANYIKQQCFLGRGVWQLNLSLLDDKELQKEIIETWTRC
FT                 LRSLARHPKRITWWLQVVKPQIRRCIIRFSRAKNYWRRRTLVQRPTNLTAN
FT                 VLEYLSRDASIYHMIREAKRGKQKIIKHLQDEQGNNYDNQNAIKQHIVQYY
FT                 SDLYSESVTDLVVQEDFLSNIQPIVNLNENEELIETILEDEIQKTITESPR
FT                 NKAAGIDGIPVEFYIRFWNVIGSELTLMYNELLVDNSFPLEFTEGMVVLIP
FT                 KKSRSIKIEDFRPITLLNSDFKIFTRLINNRMKPLLGKILGPYQTAAGTGR
FT                 SMVNILSEYRDILYLTWLCNCQTAMXFLDFNKAFDRINHCFLLKVLSKIGF
FT                 NAPFCHCSFLSLIRNCIVGTHSRIKINGQLTNQVPINQSVRQGCPLSMTLY
FT                 SIAVEPLLLYLHLRLKGLKIFNTKTICHAYADDISILVNTKQEIETVREII
FT                 MSFSTASGESSTRVEYYKSHTQRTHNPIIKSSAKGAVYKHLYYQQDTLHRA
FT                 VLPISSDIAHKILTAIYWYVWRGNIFKVSLQTMTLPRTDGGLGVKDVQSQC
FT                 TALFIKQTTKMLQSAQLGITKYLFTTLAPKDQRAPVNVGHINAQLAYVCKY
FT                 YTELSYLQEAAHRYTTSKLYISLIRGHPRNPIELKYSNKKWKNIWKNINNK
FT                 ILTTDEQSVWYDIVNEKVPTGEKLYKIKMKPDPYCDHCQLVDTIAHTFVCR
FT                 DRNTIWKWTRKKLAIINRTSENAIKVEDILYPDWNLYPSMKHNSYLWLLGK
FT                 FINYIIKNKNTTLEEFVMYIKEEHNKLQKLPKYKQQFQNFLFHTLK"
XX
SQ   Sequence 4913 BP; 1765 A; 881 C; 987 G; 1272 T; 8 other;
     ctagcaacat aacaggcatc gaaattttaa tcttacaaaa aaatagtgaa acacagaaaa        60
     taaagacaca gaacgttata aattgtgctc gacccaaaaa cgtaaaatat agcagaaaga       120
     gtgttttgcg gcagcgactc agaatacggc gcgctgcgac tgtctgcgcg tgcagggaac       180
     gcggctgcat cgctgttgtg acgcagccga cagtggaatt gtgagcactg atttcatatt       240
     cacaccatga atacaaaata taggaagttt gtttaaagtt ctcgtttgta tgattgaacg       300
     tccaaaagtg tatgaaattg tcgactggtt ttacgatcac cttgggttaa agatgaacaa       360
     gttttggttg cacttacgat tttcttggta atgttgtgta tgcaaagttg acagacgacg       420
     aaactcgtgt tagaattgta acgcagactg gggtaacgcg aaatttcaaa attgtaaagg       480
     tgaagttgtc aatgttgcaa tttcctacgc aggtttaggt ctacgatcag ttctccattt       540
     gaaatggaat tcgaatatat tcgagaagcc ctttcaccgt gggaggttat tcaaacacgg       600
     ctgaaaaatg gcaaggccac aaacactaga atgttgacaa tggagtcaga aacgtaaaaa       660
     ttatctgaaa aacatgtgcc ttctttatta cgatgcaagg atttaaagca ctggtgtata       720
     tgatgattag ccgcgaactt gtgttatcgg agctacagaa cacctaaaag gaatgcccgc       780
     gtaccatatc acagcgttta gaccggctta gtcaaatagg aaatgtaaca tatgcacaga       840
     agttagcaga cacgccgact cagagcgtgg tgctgccggt gccgagtaca gtggagcagg       900
     cagcggtaaa taacacagtg agaggccgcg aggcagccgc ctccagcgaa aatacgwgtg       960
     gccgggggga gggagccaac gaaatgcacg atacagcaga caggcatgca atacaataca      1020
     cgccgccatc tgaacagaca gaagtggatc gcactcgtac ccagagtaac tctcaaatag      1080
     tgagtgttaa tcstgtaacg gagacagcag tcctatcaag tactgctggc actccagcag      1140
     agggtgacaa agagacaaga aaagacaaca tttcaacaga aawttcgact gmtgtcaaag      1200
     agmatmataa acagcagact gcaaaaccca aacggacacg gaaacaggag cttgatgtaa      1260
     agcaggaatt aacaagaaaa ctggaaagaa caaagaaaat actgaaaaca gaaakcatag      1320
     cagtggaaag tattgagaag agacttcatc acgttgataa tgaagatgtc aaaatgaatt      1380
     cagaaggtga gatattggaa cccatggaca cagtagataa caatcttata gacaagtcga      1440
     ctctgtggtc tgacgatacc ggtcaagaat agttgcctca aattcatgca agcatataaa      1500
     atagcttcca ttaatatcaa tagaattgaa tcgatgtcaa aattaaatgt ctacaagatt      1560
     atttatatgc agctgatgtg gacgtagcta tgattcaaga agtggttaca cataaaattg      1620
     ttaatatttt tggttatgat gttattttaa atattggtca ggattgtggg acagcattaa      1680
     tgtacaaaat gggcatacca tgccaagcac aatctatact tgaaagtgga cgtggaatag      1740
     cggcaaaaat acaagatttg ttattagtaa atatatatgc cccgactggc tccaagggca      1800
     aacgaggaag aggtaatttg tttcgtgatg aaatagtgca tctgttaaca gacactcgac      1860
     atattattct gggaggagat tttaattgcg ttttgcgtcc agaagatcaa gatcctaatt      1920
     ttaatttctg tgaggagctg agtgttttaa caactggatt agacttaata gatacatgga      1980
     ttcatctccg cccacactct ataggctata catacgttag tagtacctct aaaagtagat      2040
     tagacagaat ttacgtatct aaaacattta cacaaaatgt ggttgaatgc gagatatggc      2100
     cagtaagttt ttcagatcat tgtgcctatc acataacggc taactacata aaacaacaat      2160
     gttttctggg aagaggggtc tggcaactaa atttgtcgct tctggatgac aaggaattac      2220
     aaaaagaaat tatcgagaca tggacgagat gccttcgaag tctagcaaga cacccaaagc      2280
     gcattacctg gtggcttcaa gttgtaaagc cgcaaataag aagatgcatt attcggtttt      2340
     cacgagcaaa gaactactgg cggagaagga cacttgtaca acgaccaacg aacctaacgg      2400
     ctaacgtctt agaataaaac gtaccaaagc aaaaattact gttttgcagt ccttgcaagg      2460
     gaaaaaagtg cgagtgcgtt ccacaactga tatctatcaa gagacgcttc gatataccat      2520
     atgataaggg aagcaaaaag aggcaaacag aagataatca agcacctcca ggatgagcaa      2580
     ggaaacaact atgacaatca gaatgctatt aagcaacata ttgtacagta ctattcggat      2640
     ctttattctg aatctgtgac agacttggtt gtacaggaag attttttgtc taatatacaa      2700
     ccaatagtta acctcaacga aaatgaagag cttatagaaa ccatcttgga agatgaaata      2760
     caaaaaacaa tcacggaatc tccacgaaac aaagctgccg gaatagatgg cataccagta      2820
     gagttttata tacgattttg gaatgttatt ggaagtgaac taacattaat gtacaatgaa      2880
     ttgttggtag ataacagctt tccactagaa ttcactgaag gcatggtcgt gcttatccca      2940
     aaaaagtcac ggagtattaa aatagaggac ttcagaccaa ttactctact caattccgac      3000
     ttcaaaattt ttactcgtct cataaataat agaatgaaac cacttcttgg taagatactt      3060
     gggccatacc aaacagcagc tggtacaggt agatcaatgg tgaacattct ttctgaatat      3120
     agagatattt tatatttaac atggttatgt aattgtcaaa ctgctatgat kttcctagat      3180
     tttaacaaag cattcgatag gattaaccac tgttttctgc taaaagtgtt gagtaaaata      3240
     ggatttaatg ctcctttctg tcactgatac gaaattgcat agttggaaca cattccagaa      3300
     taaagatcaa tgggcagtta actaaccaag tgccaatcaa tcagtctgtt agacaaggat      3360
     gtcctttatc catgacgttg tatagtatcg ctgtggaacc attactttta tatttgcacc      3420
     tccgtctgaa aggattaaaa attttcaaca ccaaaacgat ctgtcatgca tatgcggatg      3480
     acataagtat tcttgtcaac acgaaacaag agattgaaac tgttcgagaa attattatgt      3540
     ctttttccac tgcaagtgga gaaagctcaa cgagataagt cgaagatttt ggccattgga      3600
     cccaacagtg atcatatgga aacttcctgg ttgcaaagaa cagacaaggt aaatgtttag      3660
     gaatgttctt aacaccaaat ccacatgaaa tgataaggta attgggagca taagttgagt      3720
     actataagag ccacactcaa agaacacaca acccgatcat taaatcgtct gcaaagggtg      3780
     ctgtttataa acacttatat tatcagcaag acacattaca tagggccgtt ttaccaattt      3840
     cttctgatat agcacacaaa attttaactg ccatatactg gtacgtatgg agaggcaaca      3900
     ttttcaaagt ctccctccaa acaatgactt tgcctcgcac tgatggaggc ttgggagtca      3960
     aggatgttca atcacagtgc actgcattgt ttattaagca aacaacaaaa atgttacaga      4020
     gcgcccaact tggtattacc aaataccttt ttactacctt ggccccgaaa gatcagaggg      4080
     cgccagtaaa tgtgggacac attaatgctc aactggccta tgtctgtaaa tattatacag      4140
     aattaagtta tttacaagaa gctgctcaca gatataccac ttcgaagttg tacatttcac      4200
     tgattagggg acacccacga aaccctatag agctaaaata ttcaaacaaa aagtggaaaa      4260
     atatctggaa aaacataaat aataagatcc ttacgactga cgagcaatct gtgtggtatg      4320
     acattgttaa tgaaaaagtt ccaacaggag aaaaactgta taaaattaaa atgaagcctg      4380
     acccatattg tgaccactgc caattggtag acacaatagc acataccttt gtttgcagag      4440
     accgaaatac catctggaag tggacccgaa aaaagctagc aattatcaac aggacgtcgg      4500
     aaaatgcaat aaaggtagag gatatactat atccagactg gaatctatac cctagtatga      4560
     aacacaacag ctatctttgg ttacttggaa aatttataaa ctacatcatt aaaaacaaaa      4620
     atacaacatt agaagaattt gtgatgtata ttaaagaaga acacaacaaa ttacagaagc      4680
     taccaaaata taaacaacaa tttcaaaatt tcctctttca taccctgaaa taagaatgta      4740
     aataagttaa atgtgaggag gtatcacaag atgtgcaaca atgattttct gaagctacaa      4800
     caaaccaaca gaagatgaac aacataatga aaatataaaa tagatttcag aagcaatagt      4860
     agataatttg tttttacata ttatgtataa atgctttgta taataataat aaa             4913
//
ID   Tx1-8_CQ    repbase;    DNA;    INV; 4715 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-8_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4715
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 640-640 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >97%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           149..1333
FT                 /product="Tx1-8_CQ_1p"
FT                 /translation="METGVRKNTLKLCFQQGSKIPSNLEVLKFVTGTLELG
FT                 AADLHSVYKDENDGSFYIKLMDEPTFTEYCGRLEELYMFRYDDDSRSPVTL
FT                 VVASRIFRYVRIFNLPPEIDDKTIAQVLGQFGTIRQHVRERYSPECNLNIF
FT                 NGVRGVHMEIAKEIPAGLFIGHFRARIYYDGLKNRCFFCKQEGHVKSNCPK
FT                 LANSSSGSGGSRSYSTVTAQGRPVNAPYLSVPPMTPVMERLVKAVQEPVPS
FT                 AEGDKSATSPPAGGQGLSGPATPPTEATGTPAVIEEPQVSAETNQQQELEN
FT                 MDTGDEGGHQGVGSGTGDEGGIGDHNRGAGTGKGGGLLGVKRPAEPSSDPE
FT                 ANSSEGPEDSTGQLPFKEVSGGKKNKRSKKGKKDQSKPLSTISTRSLLKPA
FT                 K"
FT   CDS           1396..4650
FT                 /product="Tx1-8_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MFLRSICTININAINSLLKKSLLKDFIWNSDIDIVFL
FT                 QEVAFEDFGFLPSHTAIVNISTDNKSTAILVRKNINFDNVLINPNGRLSSI
FT                 LIDDINFINVYAPSGSNYRNERNSFFTFDIIPHLSFTKKNIIVGDFNCILL
FT                 PSDSNSSNKNICSGLQKLVTSLNLHDIEHKINQKTNFTFIRGDSKSRLDRF
FT                 YAPLELINNVRSINTSAVAFSDHHAVILKYKVPDNIPLQTRGRGYWKINPS
FT                 LIMNEEITADFKTLFENWKKQNMYINNFNFWWNDSTKSRIMKYFKSQSFLF
FT                 NQQIHREKNFFYTCLNEIIEKQSVGENVYNELCLVRSKLLEIEQNRLNNLS
FT                 LKTSSGSILTDERLSLFQISSRIKNQTENYSFKLRINGEITNEHCRLKQFI
FT                 TSHFNSIFAADNSDQNNDNVLSHVHKKLSVQDQMSLSKPIDKDELIFVLKE
FT                 VAKKKTPGPDGLTYEFYSHFSDILLDDLVILFNSYLVDGVNPSRDFKKGII
FT                 SLIPKKGCDQYEISNKRPISLLNSDYKLFTKILANRLKPLMKKIIGPGQTA
FT                 CNIDKSCVDNLKTLRNIIIRAGQTKRFKGLLLSLDLEKAFDKVNHSFLWDV
FT                 LKKFDFPEPFINCLKNLYKEATSKILFNGFLTDSIEIKSSVRQGCPLSMAL
FT                 FVLYIEPLIRLISDNVRGCFIADTFIKVIAYADDLNIFVLNDHEFDTVLEM
FT                 INYFSIYSKIKLNVNKSHFMRLNNCVSGPRLIPEKDALKILGVYFENSFSR
FT                 TVKLNYDSVIQKLKHCLKLHSSRHLNLIQKIWILNTFILSKIWYLAQVFPP
FT                 NKVHIAQIYSSCSMFLWNNHFFTVTRNQMFLDVSDGGLGLVDVDLKSKALF
FT                 IKNILFSYPDADDPMDRFMMAQCQNTSLTKATREWLSEVSRIALYQDLITT
FT                 KSIYRFLQSEKIFVPKVVQENPDLDWKLIWENISSNFLTSNSREALFLVMN
FT                 DVICTKSKQFRNNVRGVENNICDFCNSIDTTEHRIKYCTGSVIVWIWLKNV
FT                 LNVKLKIMIDDPEEILATDIDSKDSRLKAALFLIGEVISFNLKHYGTPSLG
FT                 KFEQSLRDTRWNNKKLVKTQFCNFLNIL"
XX
SQ   Sequence 4715 BP; 1563 A; 825 C; 933 G; 1393 T; 1 other;
     ccgaactcat tctcggacga tacgttgagc cgaacagtcg atagtggcaa acgctcccga        60
     aaaaaaaaag caaatttctc gcgcgcggcg cggccgtggt agtagtgtgt ggtggattag       120
     cggaatctat tgttaaatag ataaagaaat ggaaaccgga gttcgaaaga acacgctgaa       180
     gctctgcttc cagcaaggct cgaagatacc ctcgaatctc gaggttctga agtttgttac       240
     cggaacactg gaactgggag cggccgatct ccattccgtc tacaaagacg agaatgatgg       300
     ttcgttctac atcaaactca tggatgaacc aacctttacc gagtactgtg gtaggctcga       360
     ggagctgtac atgttcaggt acgacgacga ttcaaggtca cctgttaccc tcgtggtggc       420
     cagtcgaatc ttccgctacg tacgcatttt caatttgccg ccggaaatag acgacaagac       480
     catcgcgcaa gttctcgggc agtttggcac catccgtcaa cacgtgcgag agcgttactc       540
     gcccgaatgt aacctcaaca tcttcaatgg cgtccgtggc gtgcatatgg agattgcgaa       600
     ggagatcccg gccggcctgt tcatcggaca cttccgggcc aggatatact acgacggact       660
     caagaatcga tgcttctttt gcaagcagga gggacatgtg aaatcgaatt gtcccaaact       720
     ggccaacagt tcgtcaggca gcggcggatc acggtcctat agcaccgtga ccgcccaggg       780
     gaggcctgtt aacgcaccgt acctcagcgt gccgccgatg acacccgtca tggaacgact       840
     cgtgaaagca gttcaggaac cagtcccaag cgctgaagga gacaaatcgg cgaccagccc       900
     accggcagga ggacaaggtt tgtccggccc ggcgactccg ccgacggaag caacaggtac       960
     accagcagtc atcgaagagc cacaagtaag tgcggaaact aaccagcagc aggagttgga      1020
     gaacatggac actggggatg aggggggcca tcagggtgtg ggttcgggta ccggggatga      1080
     ggggggtatt ggggaccaca accggggtgc gggtactggg aaaggggggg gtctactggg      1140
     tgttaaacgc ccggcggagc cgtcatcgga tccagaggcc aacagcagcg agggaccaga      1200
     ggacagcacc ggacagcttc cgttcaagga agtcagcgga ggaaagaaaa acaaaagatc      1260
     caaaaaaggt aaaaaagatc agtcaaaacc tctctcaacg atctccacgc ggtcgttgtt      1320
     gaaaccagcg aagtaagcgt ccataacctc aaccaagcac gcgttgtctc gcggagtagg      1380
     tagtagtgta ggagaatgtt tcttcgtagt atatgtacca tcaatattaa cgcaatcaat      1440
     tctttgctaa aaaagtctct cttgaaagat tttatttgga attcagatat cgatattgtt      1500
     ttcttacaag aagttgcctt tgaagatttc ggatttcttc cttctcacac agcgatcgta      1560
     aacattagca ctgataacaa aagcacagcc atcctcgtta ggaaaaatat aaattttgac      1620
     aatgttctca tcaatccgaa tggtcggtta tcttctattt taatcgatga tattaatttt      1680
     attaatgtct acgcaccttc tgggtccaat tatcgtaatg aacggaactc tttttttact      1740
     tttgatataa tccctcatct atcgtttaca aaaaagaaca tcattgtggg tgattttaat      1800
     tgcatcctgt taccatctga ctcgaacagt tcaaacaaaa acatctgctc tggattgcaa      1860
     aaattagtaa catctttgaa tttacatgac atagaacata aaattaatca aaaaactaat      1920
     ttcactttta taaggggtga ttctaaatcg agacttgatc ggttttatgc acctttagaa      1980
     ttaataaata atgttagatc gatcaatact tctgctgtgg cattttctga tcaccacgca      2040
     gtaattttga aatataaagt tccagataat attcctttac aaacacgagg tagaggttat      2100
     tggaaaataa atcctagttt aattatgaat gaagagatta cagctgattt caaaactttg      2160
     tttgagaatt ggaaaaagca aaacatgtac ataaataatt ttaatttttg gtggaacgat      2220
     tcaacgaaat ctagaataat gaaatacttc aaaagtcaaa gttttctttt taatcagcaa      2280
     atacatagag aaaaaaactt tttttacact tgtttaaatg aaataattga aaaacaatcc      2340
     gtcggagaaa atgtatataa tgaattatgc ttagttagat caaaattatt agaaattgaa      2400
     caaaatagat taaataattt aagtttaaaa acaagttctg gatctatttt aactgatgaa      2460
     cgacttagtt tatttcaaat ttcatctaga attaagaatc aaactgaaaa ttatagtttt      2520
     aagcttagaa ttaacggcga gattacgaat gaacattgca gattaaaaca atttattact      2580
     tcacatttca attcaatttt tgcagctgat aacagtgatc aaaataatga taatgttctc      2640
     agtcatgttc acaaaaaact ttcagtccaa gatcaaatga gtctttctaa accgattgat      2700
     aaagatgaat taatttttgt tctcaaagaa gtcgctaaaa agaaaacgcc agggccagat      2760
     ggtcttacat atgaatttta ctctcacttt tcagatattt tattagatga tttagttatt      2820
     ttatttaata gttatcttgt agatggcgtc aatccatcta gagatttcaa aaaaggtata      2880
     atatctttga ttccaaaaaa aggttgtgac caatacgaaa tttctaataa gcgtccaatc      2940
     agcttgttaa atagtgatta taagcttttt acaaaaattt tagcaaatcg tttaaaacca      3000
     ttgatgaaaa agataattgg gcccggtcaa actgcatgta acatagataa atcatgtgtt      3060
     gataatctta aaactcttcg taacatcata attcgtgcag gacaaaccaa aaggtttaaa      3120
     ggacttttgc tgagtttgga tttagaaaaa gctttcgata aagtaaacca ttctttcttg      3180
     tgggacgtgc taaagaaatt tgattttccg gaaccattca tcaactgttt aaaaaattta      3240
     tacaaagaag cgacatcgaa aatactcttt aatggttttt taaccgactc catcgaaatt      3300
     aaatcatccg tacgtcaagg ttgtccatta agtatggccc ttttcgtatt gtacatcgag      3360
     ccattgatac gtttgattag tgataatgtt agaggttgtt tcattgctga tacctttatt      3420
     aaggtaatag catatgcaga tgatctcaac attttcgttc tcaatgatca tgagttcgat      3480
     acggtactgg agatgatcaa ttattttagt atatactcta aaataaaact gaacgttaac      3540
     aaatcgcact ttatgcggtt aaataactgt gtctccggtc cgcgtttaat cccggaaaag      3600
     gacgcattaa aaatactagg agtttatttt gaaaattctt tttctcgaac tgttaaatta      3660
     aattatgatt ctgttataca aaaattaaaa cattgtttaa aattgcattc ttcgcgtcat      3720
     ttgaatttga tacaaaaaat ttggatatta aatacattta tactttcaaa gatttggtat      3780
     ttggctcaag tttttccgcc aaataaagtg catattgctc aaatatattc aagttgttcg      3840
     atgtttctat ggaataacca cttttttact gtaacgcgta atcagatgtt cttagatgta      3900
     agtgatggag gtttaggatt agtagatgta gatttgaaat cgaaagcttt atttataaaa      3960
     aatattttat tctcttatcc tgatgctgat gaccctatgg accgtttcat gatggcacaa      4020
     tgtcaaaata cttctctaac aaaagcaaca cgagaatggc tgagcgaagt ttcgcgtatt      4080
     gctctatatc aagatttaat aacaactaag tcaatttata gatttctaca atcagaaaaa      4140
     atatttgtac caaaagtggt tcaagaaaac cctgatcttg attggaagct tatttgggaa      4200
     aacattagta gtaatttttt gacatcaaat tcaagagagg ctcttttctt agtaatgaat      4260
     gacgtcattt gtacaaaatc taagcagttt agaaataacg ttagaggtgt agaaaacaat      4320
     atttgtgatt tttgtaattc tatcgatact acggagcata ggataaaata ttgtacagga      4380
     tcagtaattg tttggatttg gctaaagaat gtactcaatg taaaattaaa aattatgatc      4440
     gatgatcctg aagaaatatt agcaacggat attgatagta aggatagtag attgaaggca      4500
     gcactttttc taataggcga ggtaattagt tttaacttaa agcattatgg tacaccaagt      4560
     ttaggtaaat ttgagcaatc tttgcgagat acacgatgga acaacaaaaa acttgttaaa      4620
     acacaatttt gtaattttct aaacatactt tgaggttatg gacagaktgt atattttgga      4680
     ttttcaataa agaacagtta atttgaaaaa aaaaa                                 4715
//
ID   Tx1-8_LMi   repbase;    DNA;    INV; 5685 BP.
XX
AC   .
XX
DT   20-MAY-2014 (Rel. 19.12, Created)
DT   20-MAY-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5685
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3488-3488 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           1590..4937
FT                 /product="Tx1-8_LMi_2p"
FT                 /translation="MIEQPERPMTEVQTYKIATVNLNKAHSSFKLQNLKDF
FT                 IYAADVDILLLQEVTDIDLEHIPGFNAFTNPGIGTEMGTAILTKEGIIVQD
FT                 VVKLTTSKGIAGTINNVRIINVYPPSGSSNRQRRAEFFKEEVVPLFGXRXE
FT                 HIILGGDFNCVLHAKDQTPNLNKSIELERIVTQLRLVDSWEHLHGAAPGFT
FT                 HVTSHSASRLDRVYVSHNLKRNILQSEIWPVVFSDHAAYICAINMAKQGTY
FT                 RGRGTWKLNVSHLEDQACQEAFHALWRECESRFASYNTATDWWLKHVKPKI
FT                 RRFFLNYSREKSFWYKSTMEFYFQCLRDLFKSDATIVENYARIKKIKAKIL
FT                 ALRRKQLEGYKIRSRVQDTAQNEITSVYHVIREHKRASRKIFTAIQLNDGR
FT                 KLTKXSEIKEAIVQHFASFMSSQPVNERLQDEFLSTLQRRINHAXAQSLIS
FT                 EVTAEDVEEAIAESKTNKSPGSDGIPAEFYKTFSSLIKDKFTLICNELLNP
FT                 XNDIPKELREGIVVLVPKTSGTKTISGLRPITLLNSDYKIFGRVLARRLNS
FT                 TMTTVTGPYQTSVGKDRKILKTLCDYRDIIATADVCKIKCALVSLDLDKAF
FT                 DRVNHQFLLRTMSAMGYPPRFIAVIRNTLTNNAARFVINGQISQPIEVTSS
FT                 IRQGCPMSMALFAIAIEPLLASLTQHLQGLQIRREKIVCNAYADDVGFLAT
FT                 SGNEVVTALEIVRKYEQASGAKLNEAKSGIFHIGRGIRLQTQGLLPELATM
FT                 KCLGIDFKRSIQKTIAVNYRKLLNSMRACVQEHSIRKLDELQKVAVANVYI
FT                 TSKVNYVAQVLPLPATLAKSMISALGHFVTRGRIFKVKYDTLMLPTTHGXL
FT                 NLTDVSQKAKALYLSNTYKEWKKQGGSLTAHLVNETAPVDLNAPVNVRHIP
FT                 NGLHHLKYFFVEYSYIHGRIPEKEIVKVKDLYKQLMKNKVGNNIEQKYPSN
FT                 NWNIIWENIHSRNLPTSVKATWYFAVNRKTATNSRLHAIRLAPSPLCPLCN
FT                 VVDDEEHRLLCKKVEDIWLAYVRQKLASISRTTPNAFTAADLLTPDSIPYP
FT                 RTKRNAVNWLKGQTLHYILTKESSNVEDFWVYLTTEHHMLMRNKKYKETFA
FT                 NFLTRTIM"
FT   CDS           join(145..771,648..1190,1174..1530)
FT                 /product="Tx1-8_LMi_1p"
FT                 /translation="MMEQEMERPTRKDTLKLTFENRSTRPKSYEVENWLEQ
FT                 DVKLSCNDIIGIHLSIIAXVVFVKLSSAELCSKVVESCGGTMKFRYSDGRV
FT                 GEVAITHAGFGIRTIRIFXLPFEITAEQINAVISPFGTVLSNFAEKWSSAH
FT                 KFPVLNGVRQLRVELRKHIPSYVNVCGYRGLLFMTINPELVRSVTSLATCA
FT                 PIVYRGAWRSYPPASPPGHRIVIYDDQPRTCSVCNKPGHVRANCIQRRVAQ
FT                 LPAGEPARPLAMTSLPGTYAAAARAQPATVLVPDPTAGAIVAEPEIPMDVS
FT                 TLIADDILDSRPPTATDEVRPTQETEPVNGADPSANEELTTPQEPESGSES
FT                 TESSPKRKSGRRNKKRRIASEGAEEAAAPLRQKAKEIAASLSKSPLRVKVP
FT                 SDKKATPAPEKTPVSALGKKGAEGRLPKEPPTQKPERIPSPEAPHDPPQTP
FT                 THTNWADEVADDPTDEEMREIQESEIDNAQLQKDDDTRKEDTSMTDLSKRQ
FT                 DYVPDPFDTDEYY"
XX
SQ   Sequence 5685 BP; 1835 A; 1272 C; 1231 G; 1333 T; 14 other;
     ggttagtctg ctcgcggwcg cgctaggggc cggacgctcc gtgccgtgcg ctgcgacagc        60
     ttgtcttcgc gtggtaagtg tcggcgcttg ctgcagcaaa tagctttcgt tattgaactg       120
     tgggaaaggt atgaaccgat tgtaatgatg gaacaagaaa tggaacgacc gactaggaag       180
     gatactttga aattgacatt tgagaatcga tctactagac cgaaatctta tgaggtagaa       240
     aattggttag agcaggatgt aaaactatca tgcaacgaca ttattggtat tcatctgtcg       300
     attatagcgw gtgtggtatt tgtcaagttg agtagtgcgg agctatgctc gaaggtagtt       360
     gaatcctgtg gaggtactat gaaatttagg tattcagatg gacgtgttgg ggaggttgct       420
     atcactcatg ctgggtttgg aatacgcact atccgaattt ttsagttgcc ttttgaaatt       480
     actgcggaac agataaatgc tgtaatttct ccgttcggta cagtgcttag caattttgct       540
     gaaaagtggt cgagcgcgca taaatttccc gttctaaacg gtgtacgaca actccgagta       600
     gaactacgga aacatattcc ttcgtatgta aacgtctgcg gatatagagg attgttattt       660
     atgacgatca acccagaact tgttcggtct gtaacaagcc tggccacgtg cgcgccaatt       720
     gtatacagag gcgcgtggcg cagctacccg ccggcgagcc cgccaggcca ctagccatga       780
     cgtcactgcc tggaacttac gccgctgcag ctcgagcgca accggctaca gttttggtcc       840
     ctgatccaac tgcaggagca atcgttgcag agcctgaaat cccaatggat gtcagcacac       900
     ttatagccga cgatatactc gattcccgac cgccaacagc aacagacgaa gttcggccga       960
     cacaggaaac cgaacctgta aatggtgcag atccttcggc aaatgaagag cttaccactc      1020
     cgcaggaacc agaaagtggg tctgaatcca cagagagttc accaaaaagg aagtccggaa      1080
     ggagaaacaa gaagcgcagg attgcatccg aaggcgcaga ggaggccgct gcacctctgc      1140
     gacaaaaggc aaaagaaata gcagccagct taagtaaaag tcccctccga taagaaagcg      1200
     acaccagcac ccgaaaaaac ccctgtctct gcactgggga aaaaaggcgc tgaaggacgg      1260
     ttaccaaagg aaccacccac acagaaacca gaaagaattc cctctcctga ggctccccat      1320
     gacccacccc agacgcctac gcacaccaac tgggcggacg aagtggcaga tgacccaacg      1380
     gatgaagaaa tgagggaaat tcaagaatct gagatagata atgcacagct ccaaaaagat      1440
     gacgacactc ggaaagaaga cacttccatg acagatctct caaagcgaca agattatgtt      1500
     ccggatcctt ttgatactga tgagtattat taagctgttt tttactatac gacttttaga      1560
     gaaggaacga agaactgaag aacgaattca tgattgaaca gccagaacga ccgatgacag      1620
     aagtacaaac gtacaagata gccacagtaa atctcaataa ggctcatagc tcattcaaat      1680
     tacaaaacct caaagatttt atatatgccg ctgacgtaga cattctcctt ttgcaagaag      1740
     tcacagatat tgaccttgaa catataccgg gattcaatgc tttcacaaat ccagggattg      1800
     gaacggaaat gggtacagct atcctcacga aagagggcat aatagtccaa gatgttgtaa      1860
     aattaaccac cagtaaaggc atagcaggta caatcaataa cgtacgmatc attaatgtct      1920
     atcccccatc gggatctagc aatagacaac gcagggcgga gttttttaaa gaagaagttg      1980
     tccctctgtt cggawcccga casgagcaca ttatcctcgg aggtgatttt aattgcgtat      2040
     tgcatgcmaa agaccaaact cccaatctca ataagtctat cgaacttgaa cggatagtca      2100
     cgcaactacg tctagtagac tcatgggagc acttgcacgg tgcagccccc ggattcactc      2160
     atgtgaccag ccactcggcg agtcgtttag acagagtgta tgtctcacat aatttaaagc      2220
     gcaacatcct gcaatcggaa atatggcctg tcgttttctc ggatcatgca gcgtacatct      2280
     gcgcaatcaa tatggccaaa caggggactt acagaggtag agggacctgg aagctgaacg      2340
     tgtctcacct agaagaccag gcgtgccagg aggcgttcca cgcactatgg agggagtgtg      2400
     agagcaggtt cgcctcgtac aacactgcta ccgactggtg gctgaaacat gtcaagccga      2460
     aaatacggag atttttccta aactactcca gagaaaaaag cttctggtac aaaagtacta      2520
     tggaatttta ctttcaatgc ctaagagatt tattcaaatc agatgccacg attgttgaaa      2580
     actatgcaag aattaaaaag atcaaggcga aaatcttggc ccttcgacgt aaacaactgg      2640
     aaggttacaa aatacggtca cgagtgcagg atacggcgca gaatgagata acttccgtat      2700
     atcacgttat ccgtgagcac aaaagagcgt cacgcaaaat attcactgca atacaactga      2760
     atgacggaag gaagctaacg aaamactckg agattaagga ggcgatcgta caacatttcg      2820
     cttccttcat gtcctctcaa ccagttaacg aacgccttca agacgagttt ctgtccaccc      2880
     tacaaaggag aataaaccac gcggamgcac aatccctcat ctcagaagtg actgcagaag      2940
     acgtcgaaga agcaatagca gaaagcaaga cgaacaaatc tccgggatcg gacggcattc      3000
     cagccgaatt ttataaaaca ttcagttccc tcataaaaga caagttcact ctcatttgca      3060
     atgaactgtt aaaccctgam aacgatatcc caaaagagct tcgggaaggc atcgtagtgc      3120
     tagtgcccaa aacmtcaggt actaaaacta taagcggtct taggccaata acattgctga      3180
     acagcgatta taagatcttt ggtcgagtac tagcgcgaag attaaacagc acaatgacca      3240
     ctgtcaccgg cccttaccaa acgagtgtcg gtaaagatag aaagattttg aagaccctct      3300
     gtgattacag ggatataatt gccacggccg acgtttgcaa aataaaatgt gccctggtgt      3360
     cccttgacct tgacaaagct tttgacaggg tcaatcacca gttcctactc cggactatga      3420
     gcgcaatggg atacccaccc cgctttattg ccgtcatccg caatacgcta acgaacaacg      3480
     cagcgagatt tgtaattaat ggacagatta gccaaccgat agaagttacc agctccatcc      3540
     ggcaagggtg ccccatgtcc atggcactct ttgccattgc tatcgaacca ctcctcgctt      3600
     ccctcacaca acatctccag ggattacaaa ttaggagaga aaagatcgta tgcaatgcgt      3660
     acgctgatga tgtcggattt ctmgccacga gtggcaacga agtcgtgact gcgctggaga      3720
     tagtcaggaa atacgaacaa gcttcaggcg caaaacttaa tgaagcgaag tccgggatat      3780
     tccatattgg acgtggcatc aggctacaaa cccaaggctt gctaccagag ctcgcaacaa      3840
     tgaaatgcct tggcattgat tttaaacggt ccatacagaa aactattgct gttaattatc      3900
     ggaaactact gaacagcatg cgagcctgtg tacaagaaca tagtataagg aaactcgacg      3960
     aactccaaaa ggtcgcagtt gcaaatgttt acattacatc taaagtaaac tatgtagcac      4020
     aagtcttgcc ccttcctgca accttggcca aaagcatgat atctgctcta ggacatttcg      4080
     tgacccgcgg acgaatcttc aaagttaaat acgacacgct gatgcttccc acgacacatg      4140
     gggktttaaa cctcacagat gtcagtcaaa aagcgaaagc tctgtacctc tccaacacgt      4200
     acaaagaatg gaaaaagcaa ggtggtagcc ttactgcaca cttggtaaac gaaacagctc      4260
     ctgtcgacct aaatgcacct gtcaatgtcc gacacatccc taacggattg caccacttaa      4320
     aatatttttt cgtggaatac agttacatac acggcaggat accagaaaag gaaatcgtaa      4380
     aggttaaaga tctttacaaa cagctgatga aaaacaaagt cggaaataat atagaacaga      4440
     aatatccatc gaataactgg aacataatct gggaaaacat tcacagcagg aacttaccaa      4500
     cgtccgtgaa agcgacctgg tatttcgcgg tcaacaggaa aactgcaacg aactctagac      4560
     tacatgcaat tcggctggca ccttcaccgc tgtgtccact ctgcaacgta gtagacgacg      4620
     aagaacatag actcttgtgt aaaaaggttg aagacatatg gctggcctat gttagacaaa      4680
     agttagctag catcagcaga acgacaccca atgccttcac agctgctgac ttactaacac      4740
     cggatagcat tccatatcca agaactaaaa gaaatgctgt caactggttg aaagggcaaa      4800
     ctcttcatta catcctaacc aaagaatcaa gcaatgtgga ggatttctgg gtgtatctta      4860
     caactgaaca ccacatgctg atgcgtaata aaaaatacaa agaaactttt gcaaattttt      4920
     tgactagaac aataatgtaa agtattacaa gaagttttca tttagaagaa tgttcttgtt      4980
     ttgacttttc tgttacacgc aacaagagaa ggtttttagg gaaacaaaaa gaagaccgcc      5040
     atggaacatt taaattcagg tatgttattg cgttgacgac tccatataac ccagtgatga      5100
     aactggacgt tctgtttcaa ttacaaattt attttaatta gtataacaag aagaagaaat      5160
     ttagtttact catgactaac atcaacacag ttttaaatca tcggtaaatc agaagaagaa      5220
     acttaagtat gttaccacat tacatctacg aggaaacgaa cttatgtatt catacaaatg      5280
     attcttgatt tcctacaaga cacaccgaaa aagggatttt cttttcatta cagtttttaa      5340
     ttctttacaa tttttttctt atttatctta ttctattttg acatcaggca cacgcaatgt      5400
     taaagaactc tactaattca tctatttgta cgacgaagaa gaacaaacat ttacttcctt      5460
     taccgaatat ttccgacaca atacggaaat atatatgtat ttcagttata tatggcaaaa      5520
     agaagcccac gccgaagaag gcgaattatg gcgagcggaa ggacgggcta taaggggtgg      5580
     atggaggccc gaaaaaaaaa caataaaagg cgtctgccta gtaagcatgg aggtccgggt      5640
     tcgattcccg gccacatcac aaattttaat tcaatgcttc acctt                      5685
//
ID   Tx1-9_CQ    repbase;    DNA;    INV; 4853 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A Tx1 non-LTR retrotransposon from Culex quinquefasciatus -
DE   consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-9_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-4853
RA   Kojima K.K. and Jurka J.;
RT   "Tx1 non-LTR retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 641-641 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 7 sequences with >94%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1307
FT                 /product="Tx1-9_CQ_1p"
FT                 /translation="XXKXXXVSSLTDFKRDRSVSPXANAYXALCEXKSHCX
FT                 TGIVCQGFFXCGIFRGVAPXMEPKREFTIKLRFGAEARNPNNAEIFKFFNK
FT                 QGWTSEDLSAMYRDDHSVFVRFKTEPMMRGALTKLGPXVKFDYDNGTSLEV
FT                 XVQAAAGTFKYVRIFGLPPEVDDRHIVTTMSKYGAIQQLVRERYSVETGFP
FT                 IWNGVRGLHIELVSEIPAQLTIQHCKARIYYDGLQNKCFGCGALDHLKATC
FT                 PKRNSVNKRLAAAATPAGGSFASIVANGTPAEPVGASPASGMVVLNPKPPA
FT                 PISKPNLEDHVEPVAPEFTAPAEQLALPQGGGDEVAEESGDQSMDEDDDNQ
FT                 QNEGEVSPNGAASMETDDAWTEAKGKGKKGKGKRGRPRKPIESDASESDAI
FT                 GGKQFIVPAQGADLLAALALPKPTGPRTRSASEQRSPHDNK"
FT   CDS           1586..4747
FT                 /product="Tx1-9_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="FFLQEVSYEDFSFIFTHNALVNISLDRKGTAILIRKT
FT                 FDYSDCIYDPSGRVISVIVNNVNFVNIYAHSGSNMKKERDNLFTEALTVHL
FT                 NKPNSASTLIGGDFNCILDAADTKGPYKNFSCGLKSLIDLFAYKDIAKLRK
FT                 ENQFTFYRGDSASRLDRFYAPSSLVENVVACSTLPLAFSDHHSVVIKIKYL
FT                 NGNLLTKGRGYWKVNPSLLSMNNITXKFKQEYENLKXRNVYNYNFNRWWNQ
FT                 HXKNKVKQFYKNESYNLNLTVRNSKSALLSSLNNLSKRLVEGEDVADEMSI
FT                 VKSKLMNLEQNRLKNLGEKMPSSTIAEGEKMTVYQLSNSIHRGSSFGLRLK
FT                 DISNGNIVTESTKIGPMVHSYFSEQYNNVSDLVDQDEADVILQNVTKNLTI
FT                 EEKQSLEEYISVEEIAATLKLCNRKKSPGPDGLTYEFYLTHFEILKFDICK
FT                 LFNAYLSGELIPPKEFSEGIITLIPKKGDTTLLQNQRPISLLNTDYKLFTK
FT                 IIANRIQSKIGNLIDIGQSACIAGRSCTDNLNDVRRILTKSIESKSFKGFL
FT                 LSLDLEKAFDKVSHNFLWIVLKRFGFSDKLISCLKCLYGKASSKILFNGFL
FT                 TEEIRIRCSVRQGCPLSMILFVLYIEPLIRNIDQAILGVLTFNKFLRVIAF
FT                 ADDLNVFLRNNEEFDIVLNIIDSFSQCSKIKLNKDKSCFWRINKCTGGPFM
FT                 VKETENLNLLGVTFKSNWSNTIDYNYEKLINGIKYRINLNNFRTMDLIQKV
FT                 WYLNTFILSKLWYLSQVLPPKNKHIASIRKISGMFLWKGCIFRVDKRQLYL
FT                 DMDRGGLGFIDPEAKCKALFIKNILKETDDNSQDEKYLLNFNHLQRLTRNG
FT                 REWVEESNRLINDNIQIKCTKQLYRTFIDQYKFTPRIETEFPLINWNILWN
FT                 LMNKPYLLSHDKSKLYLLFNDLVPNKRKLLHYNIGRVENEICEVCGEIDTN
FT                 LHRVRSCLAGKEIRDWVFGIFRKRFAVSAKQIDDLFFWRIDTESFPQRAAM
FT                 WLAVHFVAYCVDKFPRFNLFIFQRSIREFRWNSKGLVKKYFEDYLNIC"
XX
SQ   Sequence 4853 BP; 1552 A; 859 C; 1037 G; 1361 T; 44 other;
     atttmgwcaa attmaktwgg gtcagttcgc tgacagactt caagcgagat agaagtgttt        60
     cwccagwsgc taacgcatat tgwgcmctct gtgaamgcaa aagccattgt ttkactggca       120
     ttgtttgcca gggatttttc mtttgtggaa tttttcgggg cgtagcwccc waaatggaac       180
     cgaaacggga attcaccatc aagctccggt ttggggctga ggcccggaat ccgaacaacg       240
     cggagatctt caagttcttc aacaagcaag gatggaccag cgaggacttg agcgcaatgt       300
     accgcgacga ccacagcgtg ttcgtgcggt tcaaaacgga accgatgatg cgcggtgccc       360
     tgaccaaact ggggccgmag gtmaagttcg actacgacaa cggaacctcc ctggaagtgm       420
     aagtacaggc ggccgcaggt acgttcaagt acgtccggat tttcggactc cccccggaag       480
     tggacgatcg gcacatcgtt acgacgatgt ccaagtacgg tgccatccag cagttggtgc       540
     gggaacggta ctcggtggaa actggtttcc cgatctggaa cggggtcagg ggcctccaca       600
     tcgagctggt gtcggagatc cctgcgcagc tgacaatcca gcactgcaag gcaaggatct       660
     actacgacgg attgcagaac aaatgcttcg ggtgtggggc acttgatcac ctgaaggcga       720
     cctgcccgaa acggaacagt gtcaacaagc ggctggccgc ggcggckaca ccagctggcg       780
     gatcctttgc tagcatcgtt gcaaacggaa cacctgcgga accggtkggc gcatcgcccg       840
     catctggaat ggtggtactt aacccaaaac ccccagcacc catcagcaaa cctaacctcg       900
     aagaccacgt ggagcctgtt gctccagagt ttacggctcc tgcagagcag cttgcgctgc       960
     cgcagggtgg aggggacgaa gtcgcggagg agagcggcga tcagtccatg gacgaagacg      1020
     acgacaacca gcaaaacgaa ggagaagttt cgccaaacgg cgcagcttcg atggagacgg      1080
     acgacgcctg gactgaggcg aagggtaaag gcaagaaggg maaggggaag cgtggtcgtc      1140
     cacgaaagcc catcgagtcg gacgcatccg agtcagatgc gataggagga aagcagttca      1200
     tcgtgccagc ccaaggtgcc gacctgctgg cggcgttggc gctgccgaag ccgacgggac      1260
     cacgaacgag atcggcttcc gagcaacgat caccacacga caacaagtaa amcatttcaw      1320
     ckcwcmcamm cwccttttcc ggacatgacc cttgcccacc agtammctga ctctcttcgg      1380
     acacckwtac taacacaaac gatamgccaa tactaaccma tactaactca actaacatwt      1440
     actaatactg atawtactaa cccaagccac actaacacwa tgaactatcc gtattctatt      1500
     gccaccataa atttaaacag caccamcacg acggttaaca agggattatt gaaggatttt      1560
     gtatataacc acgacatcga tataattttt tttgcaagaa gttagttatg aggatttttc      1620
     ttttattttt acgcataatg ctttagttaa tattagttta gatcgtaagg gaacagcaat      1680
     acttataagg aaaacttttg attactctga ttgtatatat gatccatctg gtagagttat      1740
     ctcagtaatt gtaaataatg taaattttgt gaatatttat gcgcactctg gaagtaatat      1800
     gaagaaggaa cgggataatt tatttactga agctttgact gtacatttaa acaaacctaa      1860
     ttctgcatca acgttgattg ggggagattt taattgtatt ttggacgcgg ccgacactaa      1920
     agggccctac aagaattttt cttgtggatt aaaaagtttg attgatctat ttgcttataa      1980
     agatattgct aaactcagaa aagaaaacca attcaccttt tatcgaggtg attccgcctc      2040
     cagactagat aggttttatg cgccttctag tttggtggaa aatgttgtag cttgctctac      2100
     gttgcccctc gctttctcgg atcaccactc tgtwgtaatt aaaataaaat atttaaatgg      2160
     gaacttattg acaaaagggc gtggctattg gaaagtcaac ccctctttac tttcaatgaa      2220
     taatataact gamaaattta aacaagagta cgaaaatctt aagsaaagga atgtatataa      2280
     ttataacttt aacaggtggt ggaatcaaca tttwaaaaat aaagtwaaac aattttataa      2340
     aaatgaaagt tacaatttaa atcttacggt caggaattct aagtcagctt tgttgagctc      2400
     tctaaacaat ttatcgaagc gattggttga aggggaagat gtggcagatg aaatgagtat      2460
     tgttaaatct aaactaatga atttagaaca aaatcggttg aaaaatcttg gggaaaaaat      2520
     gccgtcgagc acaatcgcag agggggaaaa aatgacagtt tatcagcttt caaattcgat      2580
     acatcgtggg agttctttcg gtcttcgttt gaaagacatt tcaaacggaa atattgttac      2640
     tgaaagtacc aaaattggcc ccatggtgca cagttacttt tcggaacagt acaataacgt      2700
     ttcagatctt gttgaccaag acgaagcaga cgttatttta caaaatgtaa caaagaattt      2760
     aacgattgag gaaaaacaaa gtttagaaga gtacataagt gttgaagaaa tcgctgcaac      2820
     tttaaaatta tgcaaccgta aaaagtcgcc gggcccggac gggctgactt atgaatttta      2880
     tctaactcac tttgaaattt taaaatttga tatttgtaaa ctttttaatg catatcttag      2940
     tggagaatta attcctccaa aagaattctc agaaggaata atcactttga tacctaaaaa      3000
     aggtgataca actcttctac agaatcaaag accaatcagc ttattaaaca cagattataa      3060
     actttttaca aaaattattg caaataggat acagtcaaaa attggaaatt taatagatat      3120
     agggcaaagt gcatgtatag cagggcgttc atgcacagat aatcttaatg atgttcgacg      3180
     tattttaact aaatcgattg aaagtaagag cttcaaaggt tttttgctta gtttggatct      3240
     cgaaaaagct tttgataaag ttagtcataa ttttctatgg attgttttaa aaaggtttgg      3300
     attttcagat aagttgatta gttgcttgaa gtgtttatat ggaaaagctt cttctaaaat      3360
     attgtttaat ggttttctta cggaggagat tagaattagg tgttcagtcc gtcaaggctg      3420
     ccctttgagt atgattttat ttgttttata tatagaacct cttattagga atattgatca      3480
     ggccatactc ggggttctta cgtttaataa attcctcaga gtcattgcct tcgctgatga      3540
     tttaaatgtg tttcttagaa acaatgaaga gtttgatatt gtcctcaata ttattgactc      3600
     tttctctcaa tgttcaaaaa taaagttaaa caaagataaa tcatgttttt ggaggataaa      3660
     taaatgtaca ggaggtccct ttatggttaa ggaaacagaa aatttaaatt tgctcggggt      3720
     gacctttaag agcaattgga gcaatactat tgattataac tacgaaaaat taataaatgg      3780
     gataaaatat aggatcaact taaataattt tcgaacaatg gatttaattc aaaaagtttg      3840
     gtatttaaac acatttattc tttctaagtt gtggtatctc tcacaagttt taccaccaaa      3900
     aaataagcac attgcttcaa ttaggaaaat atcgggaatg tttctttgga aaggttgtat      3960
     ttttagagtt gacaaaaggc agctatattt agatatggac cgcggtggat tgggattcat      4020
     tgatccagaa gccaagtgca aagcattatt tataaaaaat attttaaaag aaacagatga      4080
     caactctcaa gatgaaaaat acttattaaa ttttaatcat ttacaaagat tgacgagaaa      4140
     tggcagggaa tgggtagaag aatcaaatag gctaatcaac gacaatattc aaataaaatg      4200
     tactaaacaa ctttaccgta ctttcattga tcaatacaaa tttaccccac gtattgaaac      4260
     agagtttcct ttaattaact ggaacatact ttggaattta atgaataaac catatctttt      4320
     atcacatgat aaatctaaac tttatttgct tttcaacgat cttgtaccaa acaagcgcaa      4380
     attattacat tataatatag gaagagtgga aaatgaaatt tgtgaagttt gtggtgagat      4440
     agacactaat ctgcatcgag ttcgtagttg tctagccggg aaagaaattc gcgattgggt      4500
     ttttggaatt tttcgaaaaa ggtttgcagt ttcggctaag caaatagatg atcttttttt      4560
     ctggcgtatt gatactgaaa gttttcccca aagggctgcg atgtggcttg ctgtacactt      4620
     tgtcgcttac tgtgtggata aatttccccg tttcaatttg tttattttcc agaggagcat      4680
     aagagagttt agatggaatt cgaaaggttt agtgaagaag tattttgagg attatttgaa      4740
     catttgttaa aaaagcgtag ggagtagatg tcgtcgtgtg tggtgcctgc attttgtaaa      4800
     gttacaatgc aatagaaaaa taaaggatgt tttagaaaaa aaaaaaaaaa aaa             4853
//
ID   Tx1-9_LMi   repbase;    DNA;    INV; 5226 BP.
XX
AC   .
XX
DT   04-AUG-2014 (Rel. 19.12, Created)
DT   04-AUG-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-5226
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3489-3489 (2014).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           147..1433
FT                 /product="Tx1-9_LMi_1p"
FT                 /translation="MAHSYRQSTIKISFNNEFARPKAFEVERFIREEIKID
FT                 PREMIGIHFSIISSVVYVKLINDTVCDKIVRENKDGLKFKHSDGNVGAVTI
FT                 DHAGLGLRTVRVFELPFEVPADIVTKALQPYGRVLSHIAEKWTTFTTYPVL
FT                 NGVRQIRIELTKHVPSYLTIGGCRAIVIYDGQPKTCSGCGKEGHVRSECLQ
FT                 RRIVQVPTGEPVPTSTATTLPLTYAEVFTKDVQSNNDITQQLERSAEGSAA
FT                 ANEDTFKEELASLPTEMPRTISPPERLEQNMEVDSRVVPTAAFVPVSKEDS
FT                 DAQPNSDTEAHVRKQRSPKRHKKRRLTPSDDCLQRTTGDSEQVEGGGDHAE
FT                 VTVTSHQEGQHPDKXKSHERPAECDNVELPAAHYQSATVEKTTQQEGVEKT
FT                 KMTTNWSQGDWSEDSGDDPMTAATGDGAAAAPLQS"
FT   CDS           join(1509..2558,2539..2826,2830..3060,3000..3344,
FT                 3263..3601,3605..3865,3869..4855)
FT                 /product="Tx1-9_LMi_2p"
FT                 /translation="MGDTHIAERRQAYRLASININTIRSRIKMSLLKEMLI
FT                 AADIDIVLLQEVYVEEFPIIYGYDAYISHASETGSGVAILLREGIEAEDVL
FT                 HLPSARGSAMTVLGVRLINIYAPSGTDKRRDRSRFFAEEIAPLFQGRHDCF
FT                 ILGGDFNCVLAPKDQIPGYTTCPELRTIVRDMHLVDTWEHVHGLRQGFTHM
FT                 TSHSASRLDRVYVTNTLSTDIVDAELWPAAFTDHTAFICTISLRRQQVWRS
FT                 RGPWKLNVAHLDNPDCRSAIEDTWTSCLRRLQAYPTTLRWWLDCAKPAIRR
FT                 TFIRYGREQAAWRRQTMNFYFTVLRDCNNQAPSPERQTTVQQAKAKIIAIM
FT                 RSHLEGWEATSKGGSQGKGTRPSHGRKPSMYHIINERKRRRRGLIHVLDTE
FT                 DGRHLTTQQEISTDFVEYYTQLYTAVDTDMAIVADNPCTIDPAAEAQRRRI
FT                 NRRSSEAIGRGAVNKSPGPDGLPLEFYRTFRRMITPIWTSICRELMSPDVP
FT                 LPPSFVEGLISRYTSHQVAQGYGTTDHGTYXPIHKPSGRSRIRDYRPLTLL
FT                 NCDFKIFSRLLASRFRSILPKRYHRSXVAWRRCQHSDSTRRISRCNRTGKT
FT                 CRLRGALASIDFDRAFDRVGHTYLAAVMKHMDFHSPLSVLSGLRQSGPHLS
FT                 GSSHEAHGFPQPFISVVMRLLNNASSKVLINGRTTAPLIISRSVRQGCQLS
FT                 TILYAIALEPLLCGLRQRLTGLTMRGYTFKCKAYADDLVLMVRTDNDCKRL
FT                 LGSTNMNGTGSRINVDKSMAMSIGDGVPDEHVAPLQLKDTLKCLGVVFNTT
FT                 CVTRSLQLQETSTVNPDSSQREYYTVFGHYPACQLCHIHGVTNSSPCTSPS
FT                 DADGDSTAYIGCVRLLRQCGTTLQIRYETLTLPPGRGGLGLAHVHDRAVAL
FT                 YISTMLKLWRRHQTSLTGILIEELAPRSQTAPVAVQHISQSLHHISAFFIE
FT                 YSYVQMALPETRPATARDIYRILTATRTGNVIEKKYPNVDWPVVWRSIHHV
FT                 SLDTETRAMWYLTVNGKHATRSRLHSIHLMDSPLCPQCRVLDDDEHRLTCG
FT                 PAAEVWRLGQQIIAFFLRVGPQDIRPRSVLFPDRTYYPRTKTNAVTWIRAQ
FT                 LVLYLFRDTPKNVLDFWIYLEERHRKIVHNPKYRQYFSNFLWSAFQDPPHS
FT                 WNVPGRRS"
XX
SQ   Sequence 5226 BP; 1535 A; 1287 C; 1250 G; 1150 T; 4 other;
     gccggccgcg gtggccgagg ggaccagtct gctttcgaca gcgcagcggt gaggacggac        60
     tgtttacgtc ccgccgcagt gtctcgcgcg tgagcggttg tttacttctc gtagtcttcg       120
     cgagtgttac ttcatataga catagaatgg ctcattcgta ccgacagtct acaatcaaga       180
     tcagctttaa taatgaattt gcacgaccga aagcattcga agtggaaaga ttcatccgtg       240
     aagagattaa aattgatcca cgagagatga ttggaataca cttctccatt ataagtagtg       300
     tggtctacgt aaaactgatc aacgacacgg tatgtgacaa gattgtgcga gagaacaaag       360
     acggactaaa attcaaacat tctgacggaa atgtcggagc agtgacaatt gatcatgcag       420
     ggctgggatt aagaaccgtc cgagtttttg aactaccttt cgaggtaccg gctgacatcg       480
     tgacaaaagc gctgcaaccc tatggtagag tgctaagcca catagcagaa aaatggacaa       540
     cctttacgac gtaccctgtt cttaacggcg tacgacaaat aaggatcgaa ctgacaaaac       600
     atgtgccgtc ttatctcacg attggaggct gcagagcaat agtgatctac gatggccaac       660
     caaaaacatg ttcaggctgt ggtaaggaag gtcatgtccg ttcagaatgt cttcaacgga       720
     gaattgttca ggtaccaaca ggagaacctg taccaacatc tacggccacg accctccctc       780
     tcacatatgc agaggtgttc acgaaggacg ttcaatcaaa caatgacatc acccaacaac       840
     tagaacgttc tgccgaaggt tcggcggcag cgaacgaaga caccttcaag gaagagttag       900
     cgtctctccc cacagagatg ccgcgaacga tctctccacc agagagactc gaacagaaca       960
     tggaagtcga cagtagggta gtgccaacag ccgccttcgt ccccgtcagc aaagaggaca      1020
     gcgatgcaca accaaattcg gatacggaag cccatgtccg taagcaacga tctccaaaac      1080
     gacacaagaa acggcgactc accccgtcag acgactgctt acaacgtacg accggagaca      1140
     gtgaacaagt tgagggggga ggtgaccacg cagaggttac cgtgacctct catcaagaag      1200
     gtcaacatcc cgataaaaas aaaagccacg agcgacctgc agagtgtgac aacgtagaac      1260
     tgcctgcagc ccactaccag tctgctactg tggaaaagac gacacaacag gaaggggtgg      1320
     agaagaccaa gatgacgacg aactggtcac aaggcgattg gtcagaggac agtggagatg      1380
     acccgatgac ggccgcaaca ggcgacgggg cagcggcggc gcccctgcaa agttagacac      1440
     gcagttaacg ccagcggata tgacgaggct ccacgacgtg tcagtacatc acgatgacat      1500
     aagctcccat gggcgacaca cacattgcgg aacgaagaca agcataccga ctagcctcca      1560
     taaatatcaa caccataagg tcgcgcatta aaatgtcctt actcaaggag atgctgatcg      1620
     cggcggacat cgatatagtc ctacttcagg aggtgtacgt tgaagaattt ccgatcatct      1680
     acgggtacga cgcctacatc tcacatgcct ccgaaacagg cagcggcgtg gcaatacttc      1740
     ttagagaagg catagaagct gaggatgttc tacacctacc ttcagcaagg ggatcagcga      1800
     tgacggtgct tggtgtcaga ctcatcaaca tctacgcgcc atccggaaca gacaagagac      1860
     gagatcgttc ccgcttcttt gccgaggaaa ttgcaccgct cttccaagga cgacacgact      1920
     gtttcatcct cggaggtgac tttaattgtg tacttgcccc gaaagatcaa attcctggat      1980
     acacaacgtg cccggaacta agaacgatag tgcgtgatat gcatttggtt gacacatggg      2040
     agcatgtgca tggcctacgt caaggcttca cccatatgac gagtcattcc gctagtcgcc      2100
     tcgatcgagt ttacgtaaca aatactctca gcactgatat cgtggatgca gaactgtggc      2160
     ctgcagcctt caccgaccac acggcattta tatgtaccat ctctctcagg agacagcagg      2220
     tgtggcggag ccgcggtcct tggaaactga acgtcgccca ccttgacaat ccagactgtc      2280
     gcagtgccat cgaagataca tggacatcat gcctaagacg tctccaggcg tatcccacga      2340
     cactacgttg gtggctggat tgtgccaaac cagcaatacg ccgtactttc attcgctacg      2400
     gtcgtgaaca ggcagcgtgg cgacggcaaa cgatgaactt ctatttcact gtgctacgtg      2460
     actgcaataa ccaggcacct tctccggaga gacagacgac agtacaacaa gccaaggcca      2520
     agattatagc catcatgaga agccacctcg aagggtggta gtcagggcaa gggcactcga      2580
     ccgagtcatg ggagaaaacc atccatgtat catatcatca acgaacgtaa gcgtcgaaga      2640
     agaggcctga tacacgtact ggacactgaa gatggcagac atctaactac gcaacaagaa      2700
     ataagcactg actttgtcga atactacact caactataca cagcggtgga tactgatatg      2760
     gcgatagtcg cagacaatcc ttgcaccatt gacccggcgg cagaagcaca gcgacggagg      2820
     attaactgaa gaagaagtag tgaggctatt ggtaggggag cggtgaataa atcgcctgga      2880
     ccagatggac tcccactgga attttatcgg accttccgac gtatgataac acccatatgg      2940
     actagtattt gccgtgaatt gatgtctcca gatgtgccct taccaccgtc cttcgttgag      3000
     ggacttatwt cccgatacac aagccatcag gtcgctcaag gatacgggac taccgaccat      3060
     tgacgcttct gaattgtgac tttaaaatat tctccagact cttagcttcg cgcttccgaa      3120
     gtatattgcc caagcgatat catcgatcaa wcgtcgcttg gcggagatgc caacattcag      3180
     acagcactcg gcgaatatcg cgatgtaatc gcactggcaa aacctgccgc cttcgcggag      3240
     cccttgcgtc gattgatttt gatcgggcct tcgacagagt gggccacacc tatctggcag      3300
     cagtcatgaa gcacatggat ttccacagcc ctttatcagt gttgtgatgc ggctattaaa      3360
     taatgcctcc tccaaagtgc tcatcaacgg acggacgaca gcacccctca tcatatcaag      3420
     atcggttaga caaggatgtc aactttcgac aattttatac gccatagccc ttgaaccact      3480
     actctgtggc ctacgtcaac gattgacagg gttgacaatg agagggtaca cattcaagtg      3540
     taaagcgtat gcagacgacc tggtgctcat ggtacggact gacaacgact gcaagaggct      3600
     ttaacttgga tcaacaaata tgaatggtac aggcagccgc atcaatgtgg acaagtcaat      3660
     ggccatgagt atcggtgacg gggtaccaga tgaacatgta gcgcccttac aactcaagga      3720
     taccttgaaa tgcttaggtg tcgtctttaa cacgacgtgc gtcacacgca gcttacaact      3780
     acaagagact tctacagtca atccggacag cagtcagagg gaatactata cggtctttgg      3840
     acattatcca gcgtgtcaat tatgttaaca catacatggc gtcacgaatt cctcaccttg      3900
     cacaagtcct tccgatgccg acggtgatag cacggcgtat attggctgcg ttcggttgct      3960
     tcgtcagtgc gggactactc ttcaaattag atatgaaacc ctcaccctcc ctcccggtag      4020
     gggaggtcta ggtcttgcac atgttcatga tcgagcagtg gcactataca tcagcaccat      4080
     gttgaagttg tggagacgac atcagacatc tctgacaggt atcttaatag aagaactagc      4140
     accgaggtct caaacagcac cggtggcggt gcagcacatc tcacagtcac tccaccacat      4200
     cagtgccttt tttatagaat acagttacgt tcagatggca ctgccggaaa ccagacctgc      4260
     gacggctcgc gacatctatc gaatcttaac ggccacaaga actggcaatg ttattgagaa      4320
     gaagtatcca aatgttgact ggccggtggt atggcgatcg atacaccacg tttccttgga      4380
     tacggaaaca cgtgccatgt ggtacctgac agttaatggt aaacacgcaa cacgatctag      4440
     actccactct atacatctga tggactcacc attatgcccc cagtgccgag tcctggacga      4500
     cgacgaacac cggttaacat gtggcccagc agcagaagtc tggcgtttag gacaacagat      4560
     aatagctttc tttcttcgag tggggccaca agacatcaga ccacgttccg tgttattccc      4620
     tgacaggaca tactatccac gaactaaaac gaatgcagta acatggattc gagcacaact      4680
     ggtgctctat ttattcagag ataccccgaa gaatgtatta gacttttgga tctacttaga      4740
     agaacgacat agaaagattg tacataatcc taagtatagg cagtattttt caaatttttt      4800
     atggagtgcg tttcaggacc cgccgcacag ctggaacgtc ccgggtagga gaagttaaaa      4860
     tattaaatcg acgaagaatg aacgaaagat atgaaaacgg caactaatcc taatgtacga      4920
     gaagacgtac ccgggcgctg gagcggcgat ggaattggaa taacactcta caccgtgctg      4980
     cgtgtatgtt tatttatgaa atgcgagaag gcagttaagt ttctgtatgg gttgtgcgca      5040
     cggtgaacag atttactatt acataaaaaa aaataaataa aagaataaaa aaaaaagaaa      5100
     actctataag aagaacttta tgttgtctac actgaataaa agtcaaacct gcttmataca      5160
     ctagccctag cctctcctaa taaatttaca cctgtttcct ttcatttttt ttaaaaaaaa      5220
     aaaaaa                                                                 5226
//
ID   Tx1-N1_CQ   repbase;    DNA;    INV; 1180 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version -1)
XX
DE   A non-autonomous Tx1 non-LTR retrotransposon from Culex
DE   quinquefasciatus - consensus.
XX
KW   Tx1; Non-LTR Retrotransposon; Transposable Element; nonautonomous;
KW   Tx1-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-1180
RA   Kojima K.K. and Jurka J.;
RT   "Non-autonomous Tx1 non-LTR retrotransposons from the southern
RT   house mosquito.";
RL   Repbase Reports 11(1), 594-594 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 3 sequences with >98%
CC   identity.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..1096
FT                 /product="Tx1-N1_CQ_1p"
FT                 /translation="MERTQKKNTIGFEFERDGVMPTLKEAISFLVNDLKIK
FT                 DTEVHSVYLELTGKTFFVKFIDETTLKEVTLRLKETEPFKYANGKVVQVRV
FT                 AAADGFFRYVRLFNLPPEVTDSDITKVMAKYGTVRQMVREKLPLELGFDAF
FT                 SGTRGVHMEVKTEIPPSLFIGHYKCRIFYDGLRNRCFVCRQEGHVKAACPS
FT                 KASASRATGESGSSSEVQGVTEHVENLIVPLNVAVENPIVPNGTVPSIEDS
FT                 NFLKEIAFGEDFEDELGKDGENESEKEWTTAKKRGRQQKDKQEESGSDSSE
FT                 PGKSKVSRTPSLLKLQSEYNRKLRSGMSK"
XX
SQ   Sequence 1180 BP; 386 A; 221 C; 303 G; 270 T; 0 other;
     agtcgcggat aaggagtggt tgaagacgga cgcgaaaaca gatagctccg taagatcttt        60
     ttaagctacc caaggccaga ggccttctgc attgttcttt tgaacaaaga ggatttgatc       120
     aaaaagtgaa aaaatggaac gcacccagaa gaaaaataca attggcttcg agtttgaaag       180
     agatggcgta atgccgacct tgaaagaggc tatcagtttt ctggtcaatg acctgaagat       240
     aaaggatacg gaagtgcatt cggtctatct ggagctcaca ggtaaaacgt ttttcgtcaa       300
     attcattgac gagaccacgc tgaaggaagt aacgctgcga ttgaaggaaa cggaaccctt       360
     taagtatgca aatggaaagg tagtgcaggt acgcgtggca gcagctgatg ggttcttccg       420
     ttacgtgcgg ttgttcaacc tacctccgga ggttacagat tcggacatta ccaaagtcat       480
     ggcaaaatac ggcacagtac gccaaatggt tcgtgaaaag ctacccttgg aacttggctt       540
     cgacgccttt agtgggacta ggggtgttca catggaagtg aagacggaga tcccgccgtc       600
     gctctttatt ggccattaca aatgtcgaat cttttatgac ggactacgga atcgctgttt       660
     tgtctgcagg caggaagggc acgtgaaggc tgcatgtcct tcgaaggctt cggcttcacg       720
     agctacaggt gaaagtggat caagtagcga agttcaaggc gtaactgaac atgtggaaaa       780
     cctcatagtt ccactgaacg tagcagtgga gaaccccatc gtaccgaacg gaacagtacc       840
     gagcatcgag gattccaatt tcttgaagga aattgcgttt ggtgaggatt ttgaagatga       900
     actcgggaag gatggcgaga atgaatccga aaaagaatgg acgacagcaa agaaaagagg       960
     acggcaacaa aaggataaac aagaagaaag cggttctgac tcctcagagc cagggaagtc      1020
     caaggtttct cgaacgccat cacttttaaa gctgcagtcg gaatacaaca gaaagttacg      1080
     gagtggaatg tcaaagtgaa tattaatttt tctttatttt ttgtaatgta aaaagataaa      1140
     tgaaaataaa taacctcata cacaaaaaaa aaaaaaaaaa                            1180
//
ID   Tx_mos      repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Mosquito transposon DD37E - a consensus.
XX
KW   DNA transposon; Transposable Element; Tx_mos;
KW   putative transposase.
XX
OS   Toxorhynchites amboinensis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Toxorhynchitinae; Toxorhynchites.
XX
RN   [1]
RA   Shao H. and Tu Z.;
RT   "Evolutionary divergence of unique DD37E transposable elements
RT   and evidence for horizontal transfer between distinct mosquito
RT   species.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A. and Jurka J.;
RT   "Mosquito transposon DD37E - a consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [2] (Consensus)
XX
SQ   Sequence 1303 BP; 412 A; 258 C; 302 G; 330 T; 1 other;
     tgcttcattt agaattggaa caaattcttt tgctcatatt gtggcgctcc tggtggacgg        60
     atttggaagc tcttggcgcc cacgtgtcgg gaattttgtc agcttcacgt atgtattttt       120
     gacattccgc aaatcgactg tactttgtaa acaatcaaca tggaagccga aagaagggaa       180
     aaaattgtgc acagttattt ggaaaatcca ttgtggtctg catctaggct agctaaacag       240
     ctgaaattgc ccagaaatac cgtatggcgc gttatcaaac ggtataagga aacattgacg       300
     acgattcgga agcctcaagc caatcgtcgg agtggaactg tcgaccggaa actgcgtggt       360
     aagattttga agacgattaa gaggaatccc aatctgtcgg accgtgattt ggccagaaaa       420
     ttcggtgctg cycatagtac cgtgaggaga actcgactcc gggaaggaat caagtcgtat       480
     cgagctagca aacagccaaa tcggaccata aaacagaata gtgtggccaa aatccgtgct       540
     cggaagctat acgaccaggt gctgaccaag ttcgacgggt gtcttctgat ggacgatgaa       600
     acctatgtca aggctgactt cgggcaaatc ccaggtcaaa aattttactt ggcaacggct       660
     cggggggatg ttccagccaa atttaaattt gtttttgccg ataaatttgc acgaaaattt       720
     atgatttggc agggcatttg cagctgtggc aaaaaaacga aagttttcgt tacaaacaag       780
     acaatgacgt cggaactata ccaaaaagag tgtctccaaa aacgaatttt gccgttcatt       840
     cgatcccacg accatcccgt aatgttttgg ccagatttgg caagctgtca ttacagcaaa       900
     gtcgttcaag aatggtatgc agagaaaggg gtccagtttg ttccgaaaaa ccttaaccca       960
     cccaactgcc cccagttccg ccctattgag aaatactggg caatcatgaa gaggagactc      1020
     aaggcaaagg gaaaggttgt caaagacatc aatcagatga agacctggtg gaataagata      1080
     gctaaaacga tggacgaaga aggtgtgcgc cgcctaatga gccgtgttac aggaaaaatt      1140
     cgagaatttc ttcgaaaccg tgacgaataa ttttatccgt attttttctt aaaagtatga      1200
     agaaaacgct acatttgtat aaaaaacaga tcttgaattc aataataaat aactgaaata      1260
     caggcaattg tttttgttcc aattctatat gaagcaagct tta                        1303
//
ID   UHU         repbase;    DNA;    INV; 1655 BP.
XX
AC   X17356;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Drosophila heteroneura DNA for Tc1-like transposable element Uhu.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Long terminal repeat; Tc1-like transposable element; UHU;
KW   Repetitive sequence.
XX
OS   Drosophila heteroneura
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   Hawaiian Drosophila; planitibia group; planitibia subgroup.
XX
RN   [1]
RP   1-1654
RA   Brezinsky L.;
RT   "UHU.";
RL   Direct Submission to Genbank (19-DEC-1989)Brezinsky L.,
RL   University of Hawaii, Genetics, 1960 East-West Rd., Honolulu,
RL   Hawaii 96822, USA..
XX
RN   [2]
RP   1-1654
RA   Brezinksy L., Wang V.G., Humphreys T. and Hunt J.;
RT   "The transposable element Uhu from Hawaiian Drosophila - member
RT   of the widely dispersed class of Tc1-like transposons.";
RL   Nucleic Acids Res 18, 2053-2059 (1990).
XX
RN   [3]
RP   1-1655
RA   Brezinsky L.;
RT   "UHU.";
RL   Direct Submission to Genbank (12-SEP-1990)Brezinsky L.,
RL   University of Hawaii, Pacific Medical Research Center, Kewalo
RL   Marine Laboratory, 41 Ahui Street, Honolulu, Hawaii 96813.
XX
DR   GenBank; X17356; Positions       1    1655.
XX
SQ   Sequence 1655 BP; 548 A; 321 C; 341 G; 445 T; 0 other;
     tatacagtgt cttacagctc aactggacca gtgcctagca aaaattttaa ttgcctgcca        60
     taaactaatt atccattatt tttcaaaaat tccaaagacc gatggcaggt acatatatta       120
     accaccaaaa tgaatatatg atcccaataa actggggttt cccacctgct aggtcgggtt       180
     atgtaaaaaa gtaccttaat ttatggttac atattatttg gaccagcggc gttatggaca       240
     cctgggtgcc ataaaacccg gatttttacg tcaggttgat tattttcggt ataaatagac       300
     caatccttcg tagtcagttt agttatatcc tgcatctcgg gtgcaaccag ccaacaaggc       360
     atatgggcaa gcggactacc attgaacaac ggaaactgat cctggaacat ttcaagattg       420
     gatattcata tcgccaaata gctaaaatgg taaatctaag taccacaact gtattcaaca       480
     tcattcggcg cttcgtcgac gaaaatcgga tagaggacaa gggcagaaag gcaccaaaca       540
     agattttcac cgaacaggag gagcggagga tcatcaggaa aataagggaa aatcccaagc       600
     tatcggctcc aaaactgact caacaggtgc aggatgaaat ggggaaaaag tgcagtgtgc       660
     aaactgtgcg ccgggttctg cacaaccatg actttaatgc ccgagtacca cggaagaagc       720
     catttataag cacaaaaaat aaagggacta ggatgacgtt cgccaaaacc cacttggaca       780
     aggatttgga gttctggaac acaatcatat ttgaagatga gtccaaattc ataatttttg       840
     gctcggacgg acggaattat gtgcggcgac agtccaatac tgagctgaat cccaaaaacc       900
     taaaggcaac agtgaagcac ggcggaggaa gtgtcatggt atgggcatgt atctccgcag       960
     ccagcgtcgg aaatttggtg tgtattgaaa caacaacgga caggaatgtg gacctcagta      1020
     tattaaagga aaatttactc caaagtgccg agaagctagg aatccgacgt actttccggt      1080
     tctaccagga caacgaccag gacaacaacc aagcataagt ccggattagt accgtcctgg      1140
     cttatctgga actgccccca catgataatt taaccggccc agtctccaga tgtaaatgtt      1200
     atttaaaatt tgtgggatct gctggaaaat aacatccgga atcacagatc caatctcaaa      1260
     aaatgctttg ctggatgagt ggagcaaaat cagtccagaa actacccgga agctggtatc      1320
     ttcgatgaat aataggttaa tggaagatat taaggctaaa ggatatcata ctaagtatta      1380
     acatccttat ttaagttttt atacgtcgaa tatgtttatt ttctaagact gtcccaaaaa      1440
     agctttgacg tgtattttgg atatgtttca gtttttgact aattttagtt aagtaattaa      1500
     tattttatta aaaactaaag ctttcttttc aaacgtgata taacataaaa catattggca      1560
     tttaaacatt ttgagtttgt ttctttgttt aaaccttata gcactttaaa ttttttgcta      1620
     gagactggtc caaatcagct ggaagacact gtata                                 1655
//
ID   Uhu_DAn     repbase;    DNA;    INV; 1656 BP.
XX
AC   .
XX
DT   04-MAR-2010 (Rel. 15.06, Created)
DT   04-MAR-2010 (Rel. 15.06, Last updated, Version 1)
XX
DE   Tc1-like DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; UHU; tc1-like;
KW   Uhu_DAn.
XX
OS   Drosophila ananassae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ananassae subgroup.
XX
RN   [1]
RP   1-1656
RA   Styles P.;
RT   "Uhu_DAn.";
RL   Repbase Reports 10(6), 932-932 (2010).
XX
DR   [1] (Consensus)
XX
CC   Consensus sequence for Uhu, a Tc1-like DNA transposon, in D.
CC   ananassae. There are 17 complete or partial copies of Uhu in this
CC   species. Uhu is also found in members of the Hawaiian Drosophila,
CC   including D. grimshawi, where its consensus sequence is almost
CC   identical in length at 1655bp, compared with 1656bp in D.
CC   ananassae.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(373..978,1093..1350)
FT                 /product="Uhu_DAn_1p"
FT                 /translation="NGTRYNNRAARTRPAPLQKWQKWRAIDEIVSLSPSTV
FT                 QYIIQRFVRKDRIEDKGRNAPNKIFYEHEERRIVLKIKESPKLSASKIVAE
FT                 VAQEMGKKFSADTVRRVLHDHNFNGRVARKKPLISKKNIAARLKCSKEHLL
FT                 HPISFWDDVIFADESKFNLFGSDGRQFVWRRPKTELDNKHLKATTKHGGGY
FT                 VMVWACMAASGVYQDNDPKHSASIVKTWLVWNCSQVVITPAQSPDLNVIEN
FT                 LWEILDQDIRKRKISNKNDLKTALLEEWGKFPVEMTKKLFFFHCEPD"
XX
SQ   Sequence 1656 BP; 545 A; 291 C; 343 G; 477 T; 0 other;
     tacagtgggt cgcagcttat ttcgtgcagg ggaataaaaa atgtttaagt cgctattgcc        60
     gctaaacgaa tagggatatt ttaaaaattt aaacgcaata ttttcgttag ggatattaac       120
     atatttaata actaaaaaat aagttcataa acataaaaac aaaaaagtta cataccaaaa       180
     accaaattaa cagtcatttt cgaggccgca gcttatttcg tgcagcatat ttatatacca       240
     aaaatattaa attttaagcc aaactcccaa tttttttttt gctttttggt attatataac       300
     tttaactatt tatataatct acatctcggg gattgatcac tctaaatgca aaagattaag       360
     gggaaaaact gaaatggcac caggtacaac aatagagcag cgagaactcg tcctgcacca       420
     cttcaaaagt ggcaaaagtg gcgtgccatt gatgagatcg tatccttaag tcctagtact       480
     gtacagtata tcatccagcg atttgttcgg aaggatagga tagaggacaa gggccgaaat       540
     gcgccaaaca aaatttttta cgaacacgag gagcgccgga tagttctaaa aattaaggag       600
     agcccgaagt tatccgcctc aaaaattgtg gctgaagttg cccaagaaat ggggaaaaag       660
     ttcagtgctg atacggtgcg ccgcgtgtta cacgatcaca actttaatgg tcgtgtagca       720
     cggaagaagc ccttaattag taagaagaat atagcggctc ggttaaaatg ttcgaaggag       780
     catctccttc atcccatttc cttttgggat gacgttatat tcgcggacga atccaaattc       840
     aatctgtttg gatcggatgg gagacaattt gtttggcggc gaccgaaaac ggagctcgac       900
     aataagcacc taaaagctac gacgaagcat ggcggaggtt atgttatggt ttgggcctgt       960
     atggcagcct caggagtctg aaacttagtt ttcatcgacg gcattatgga tgccaaaatg      1020
     tatttaaacc tcctgaagga aaatctgctt caaagtgctg ataatttggg catacgggac      1080
     agatttagat agtaccagga caatgatccg aagcattcag ccagcattgt gaagacttgg      1140
     ctcgtctgga attgttccca agtggttata acaccagccc aatccccaga cttaaacgtt      1200
     atagaaaatt tgtgggaaat attggaccag gatatccgta aaaggaagat ttccaataaa      1260
     aatgacttaa aaacggcgct gttggaagaa tggggaaaat ttcccgtgga aatgacaaaa      1320
     aaattgtttt tttttcattg cgaacccgac tgactgctgt ccagaaccag aagggaggac      1380
     atactaaata ttaagttata aaataagagt tttatgttaa gcctaattaa gtgcacgaaa      1440
     taagctgcgg cctcgaaaat gactgttaat ttggtttttg gtatgtaact tttttgtttt      1500
     tatgtttatg aacttatttt ttagttatta aatatgttaa tatccctaac gaaaatattg      1560
     cgtttaaatt tttgaaatat cccttttcgt ttagcggcaa tagcgactta aacatttttt      1620
     attcccctgc acgaaataag ctgcgaccca ctgtat                                1656
//
ID   ULTR-1-I_NVi repbase;    DNA;    INV; 343 BP.
XX
AC   .
XX
DT   10-APR-2009 (Rel. 14.04, Created)
DT   10-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   internal portion of a nonautonomous LTR retrotransposon,
DE   consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   ULTR-1-I_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-343
RA   Bao W. and Jurka J.;
RT   "Nonautonomous LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 789-789 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 343 BP; 91 A; 80 C; 118 G; 54 T; 0 other;
     tggcgcccaa ctgaattacc cacaggcgtg gataaggaag atttccacgg ttctccagga        60
     gttccacgaa ggaggaggag acgaggaaga aacccccacc tacgaaactg actctcccag       120
     gcgggaagag ggatcgagca gatcagctgc agcggcggca gcccagggca ctgcggatta       180
     cgacatgcgg tcaagaagac gagtgcgaaa ggtgcgggga tgtacgaggt tggagacatc       240
     gtcgaagagc tagtcggcga agaagagttc ctgcatttac cggcgatcct gcggtggatt       300
     ggtagagtcg aaatcgggac gataatccga ctctagcggg ggg                         343
//
ID   ULTR-1-LTR_NVi repbase;    DNA;    INV; 188 BP.
XX
AC   .
XX
DT   10-APR-2009 (Rel. 14.04, Created)
DT   10-APR-2009 (Rel. 14.04, Last updated, Version 1)
XX
DE   Nonautonomous LTR retrotransposon, long terminal portion,
DE   consensus.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   ULTR-1-I_NVi; ULTR-1-LTR_NVi.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-188
RA   Bao W. and Jurka J.;
RT   "Nonautonomous LTR-retrotransposons from Nasonia vitripennis.";
RL   Repbase Reports 9(4), 790-790 (2009).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 188 BP; 39 A; 54 C; 54 G; 40 T; 1 other;
     tgtaacgagg aacaacgtcc ctcgccacgc cggtaatcga ggcaggatag agagtgacga        60
     aatagggcgg cgttggctca agyggtagca cgcgcgccta gagatctcgg gagcgccgga       120
     tcgattctcg gtcccggcgt ctccttttgt gattttctcc tctcacgtca aagtctcacc       180
     ccgttaca                                                                188
//
ID   ULYSSES_I   repbase;    DNA;    INV; 6381 BP.
XX
AC   X56645;
XX
DT   17-OCT-2002 (Rel. 7.09, Created)
DT   17-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   Ulysses LTR retrotransposon, an internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; LTR; ULYSS;
KW   ULYSSES_I; ULYSSES_LTR; retrotransposon; reverse transcriptase;
KW   internal portion.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-6381
RA   Bishop G.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (19-NOV-1990). Bishop
RL   J.G., The Johns Hopkins University, Department of Biology, 34th
RL   and Charles Streets, Baltimore, MD 21218 USA.
XX
RN   [2]
RP   1-6381
RA   Scheinker S.V., Lozovskaya R.E., Bishop G.J., Corces G.V.
RA   and Evgen'ev B.M.;
RT   "A long terminal repeat-containing retrotransposon is mobilized
RT   during hybrid dysgenesis in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 87(24), 9615-9619 (1990).
XX
RN   [3]
RP   1-6381
RA   Evgen'ev B.M., Corces G.V. and Lankenau H.D.;
RT   "Ulysses transposable element of Drosophila shows high structural
RT   similarities to functional domains of retroviruses.";
RL   J. Mol. Biol 225(3), 917-924 (1992).
XX
DR   GenBank; X56645; Positions    2137    8517.
XX
SQ   Sequence 6381 BP; 1654 A; 1503 C; 1860 G; 1364 T; 0 other;
     atatggcgcc caaattgaag aagcactcgg cttctttgaa gtcggtgtgt aatcaaagaa        60
     aaataaatac gataaaaatg aaggtacaga ggaaaggact cccttggctt caggacccca       120
     caccgctgaa gtcttatgtc ggcagagtag gtagctcata atgcgcacgg tgtagtggaa       180
     tccgagaagc acgacggaag tagaggttat ctgaatatcc atccataagc atgaggggtt       240
     ttttttgtag tggttgatgg ccgttcgcat gttggcgaaa catttgcgac tatccatcgt       300
     tcgcctggtg gtagccgcaa cgacaaaggc atctcatggt taaaaaaatg tgatattagg       360
     gtagtttagt cagatgttat ttattcaatt agttgttttt gtctcatttt gtgttaatgt       420
     tgatgtatgc tggccgtagt tatacgagct tcggagaccg gttgacccag acgatataga       480
     gccgagcctg cgccgcatct gtcacacagc atatcccaag aatggccaga agagcgacgg       540
     agaacggatc ttgccatggt gtccattgac atggggtgtt ttcttgtcgc ggttgatgac       600
     tggtaagtca cgtttgctag ttggtgaacg ttcgcgaccg tcaatcgtag cctggtggta       660
     gccgccatga caaaataacc tgtgaacgaa atgtgatatt agggtaggtc tgactagagt       720
     ttgtttaatg ttttcaattt gttttgtccc actctgtgtt aacgtttggt gtgtgctggc       780
     cgtagttaaa tgagcttcgg aggcaggtga cccaggacga tatagagccg atcctggcgc       840
     cgcacctgtc acgcagcata ctctaagggt gcacagaagt gcgacagaaa ccaatagcct       900
     tcaaggtagc gttccttgca tgccgtccgt cagtcaaact gacgaactga gcatgggacg       960
     aatgccttaa gtgttgtcca ctgtccagat tatgcgtaga ttatttagcc tgtgttagga      1020
     tttgtcgtct ctccccaagt atttgaaatt aattagaaag aaaacaaaat ttttgtgaag      1080
     tggtttttgt ggatcaatgt gtattaattt attattcttt attagtaaga tttgttagtg      1140
     ggatgtttat ttatttatta atttattaga aatattagta aagtttttat aagggttgta      1200
     cgccttgtag aagatagggg gtactgttct cagaaggaat aagtatggct gagaaacagg      1260
     tgtctgattg ggcttctgac gactgatggg gcgtcgctct gccaccgccg agcccagctg      1320
     gagggctggt gcgaacgcca atgaatttcc ggggagttta atgagagaga cagatccctg      1380
     taaaggaggg tcacctggta gacttggagg aaagaattgg cgcaacagcc tagacctcca      1440
     cggaacctgg agttcccaaa agccccgaaa gactcagtgc tcaaatccgg cggcaaacgc      1500
     ggcgatcgct caggcccacc aaaggatatc tgcatgctct gccatctggc atcagcgagt      1560
     ccatccgcga ggagatgcga gctggcttca tggaaatgat gaagggcatc cattgatgtg      1620
     cttaggccgc cagggagcca aacccgccga aactaacact gcgccgaagc cgccaaggac      1680
     atgtcgagcc gggaccgcga acaggcgcca tcccgaaaga acggaagtgt tccagcgcga      1740
     gcattccacc accgtgccac cgaagccacg taggcaagcg cacagggcgg agtattcgtc      1800
     cagcagccca gtttacgtgg cagatgctca gtcgaggaac tggcgtaacc cgaataaccg      1860
     ccatttccga gtagaggacc ggagagcgga tgattttcaa ccggaggagg cgtacgccaa      1920
     cgtgcgagaa actgcgtaca tgaagctcga gcggtggaac gtcaagtttg acggcgagga      1980
     cgcgatgaat tcggtcgagg acttcgtgtt ccgcctagag ttcctgcaga ggcagtatca      2040
     gtgcccgtgg aaggaggtcc tgcgcggttt ccacctgctc ctgaccggcc gcgcccgcga      2100
     gtggtactgg atgcacgtgc ggcattctag ggtcgacagc tggatgcaac tgcggcatgc      2160
     cctcttggac aggttccggg gctaccagac ggaacacgag gtaatgcagg agcttctaca      2220
     acgagagcaa caggccagcg aaggggtgga tgattatatc caccacatgc gtcaactcgc      2280
     cgcgcgattc cagaagccgc tgagagaccg agagctggtg aggattataa agcgtggttt      2340
     aaaagaaagt ctggcgaaat atatttatgc catggacgta ctcaccgtgg atgagctgcg      2400
     ccaagagtgc ctagaagtgg agaggcacat gggtcgcaga agccggactg ggtaccttca      2460
     gccgtcgcgt tgtccacaag gaacgaggcc cgtagtccac gaggttgaag ttccaccgca      2520
     tcttacagaa acgccaccgg gagaactgga ggaggcattc gtgcgaacga ggaactcatc      2580
     cgaattgtat gctggaactc gagacagttc gaccacgtct ttagagactg cctgtccaag      2640
     gagcggaaaa tattctgcta taggtgtgga aagccggaca cgttctgctc gcagtgtgaa      2700
     aactgtccgg gaaaccccag agggagcgcg gtgatggcgg gacagacgcg ttccgggacg      2760
     gcgaccgcgg gaaagcagga gaggggcacc taccagagcc aataatcatt ggaaaggaga      2820
     cggagatttg gaataaggat caggataagg ctaattataa taatagtata agcaaaggag      2880
     gaacacttag gggcttacca tacgaagaac gtgttcgggc atacatgtcg gcccgaaata      2940
     gaatttttgg tgagcgacag ctggagggga tgacgctagc cacccggaga atggtgaagg      3000
     cacgtgcgcg cttccgcaga cgcaggatta ccaggcgcca ggtcgtcgaa gcggtgagac      3060
     gggaggagag tatagaccca cgagtattcg ccgaagtgga ggtcgctgga gccaaaatga      3120
     aagggttgct ggacacgggg gcctcagtca gtctgttggg acaaggatgc cgggagttag      3180
     tggagaaact gggatgggaa gcgcggccat acgaatcgat ggtgaggaca gcatgcatgg      3240
     gtgccaatcg cccaatttta ggtcgcgttg ttctgcctgt gaaatacgga atagaacggt      3300
     tagatatcgt attttacatg tgcccggacc tgcgacagga actatacctg ggaatcgact      3360
     tctggcgagc ctttgagatc gcaccagagc tgctcggtcc ggccagaaag tccgaaacac      3420
     caccagaggc atctgaggta acggtagcga acccagaggt ggcttattac cgggacgacg      3480
     acgactgcgt aacggatccg gaaatgtggg acctggacaa cgatcagagg agtcagttgg      3540
     aaagcgtgaa gcgcagattt ctccaatttg agaaggatgg cctagggaaa actcacctgc      3600
     tgcagcaccg aattcagctg atcgagggag cagaacccgt gaaagacaga cttaatccgc      3660
     tgtccccggc caaacaggag atcgtgtggg ccgaggtgga taagatgcta aagttgggca      3720
     tcatcgagga gagtgacagc ccctggagca accggacgac ggtggtgatg aggcctggga      3780
     agaacaggtt ttgcttagac gccaggaaat taaacagtgt aacggtaaaa gacgcgtacc      3840
     cgcttccatg catcgagggc atcctatcgc gatcgacgag actcatttta tctctagcgt      3900
     cgaccttaag ttcgcgttct ggcaatagag atggaggaga agagcagggc gtatacggcg      3960
     tttactgtac caggaggccg ctgtaccagt tccgccacat gccattcggg ctctgcaacg      4020
     ccgctcaaca cttcgaggct catgacaagg taatcccggc gaatctgagg tccaacgtat      4080
     tcgtatacct ggacgacttg ctgataatat cggcagattt tccaacgcac ttaaaatact      4140
     tggaattggt ggccgagtgt ctgaggaacg cgaacctcac cataggcatg gcgaagtcga      4200
     aattcctgtt ccgcaaccta aactacctgg gtttcattca attaaggcgg cggacgtggc      4260
     gcatggatcc gggaagggta gaagcgatcc ggaacatccc gaatccgagg acggtcaagg      4320
     aactacgaag cttcttaggt acggcggggt ggtaccgccg attcataaag aatttcgctg      4380
     agatatcggt accgttgact gatgccctta agaagagaac gggtagattt gtgttgagcg      4440
     acgaggccat agaagccata gagagcttaa agttagccct caccacagcc ccggtgttag      4500
     ttcacgcaga ttttcgaaga ccattcttca tccaatgcga cgcatctcac tacggagtag      4560
     gagctgtgtt gttccagcta gacgacgaac aacaggaaag gccgatcgca ttcttctcgg      4620
     ccaaactcaa caagcaccag atcaactatt cggtgaccga gaaggaatgc ctagccgcca      4680
     aactggccat acatcgattc cggccgtacg tggagatgat gccgttcacg gtaatcaccg      4740
     atcatgcgag tctgcagtgg cttatgagtc tcaaagactt gagcgggaga ttagccaggt      4800
     ggtccctcga actgcaagcg ttccctttct ccatgcagta ccgcaaggga gccgacaacg      4860
     tgtgcagaca cattgtccga agcgtggaag aggtcgaact gaccccggaa gatctgttgg      4920
     gatttcagac cccggagttc gagagtccga atatcgagga gctgataaga gaggtgatga      4980
     gccaacaagg gaagtttccg gaccttagca gtggcaggac ggacttctct tcaagaggga      5040
     ccgtgcacga gagcttggag gatgaggtcg aaggcacaag ttggaagctc tgggtgccgg      5100
     agtcgctgac ggcaggactc atccaacaag cgacacggcg gacgagacgc tcagctcatg      5160
     gaggcatgag gaaaacgctg cacgcgctgg ccaggcaata ttattggccc aacatggcca      5220
     tacaagtcag ggactatgtt cggaaatgcg atacatgcaa ggagaccaag gcacagaact      5280
     accgaatgca ggtcggaatt ggggaagaag tgcgcaccga ccgccccttc cagaagctat      5340
     atatcgactt cttggggaag tatccacggt cgaaacgagg gcatgcgtgg atattcgtcg      5400
     tcgtagacca cttctcgaag tttaccttcc tgaaggccat gagggaagcc accgcggcgg      5460
     atgtcgtgaa cttcctagtg catgaggtgt tcttcaaatt tggcgtgccg gaagtgatcc      5520
     attcggataa tggacgacaa ttcgtgtcaa agtcgttcga tgcgatggtc caggcgtttg      5580
     gcattactca cctgcgcaca ccagtgtatt cgcctcagag caacgccgcc gaacgcgtga      5640
     accgcacagt gctgtcggca atccgaacct acctgggtca ggatcatcgg gaatgggacg      5700
     cgtacctacc agaggtggaa gtggcgatcc ggaatgcggt ccacagcggc tacgggagtc      5760
     actccgttct tcgcggtctt tggacagcag atgtacctga atggttccag ttacaaactg      5820
     gccaggaagc tgtagatcat tggccgacca cagtatttct gaccttgacg caaaggacag      5880
     actggctgta atccgaagcc aagtcaagga ccacctgcac accgcatacg agcgaagtcg      5940
     ccaacggtac gaccaccgcg cgccgacagc tccatctgga accgggacag gaagtgtgga      6000
     ggcgcaactt cgcactaagc agcttcggca aagccttcaa tgccaagttc gcccggaagt      6060
     tcttgaagag ccgcgtcgtc cgagccgtgg gaaccaacgc ctacgagttg gaagatctcc      6120
     agggacgcgt gctaggcgtc ttccacgcaa aagatatacg aacataatcg taatttgctc      6180
     acctccttgc caggcaacgg cggcggcagc gccagtcccc cccttttttt ttgggtcagc      6240
     aaaaaaaaaa aaatatagat tacttgtcgt gggtgtggcc tacgttgggc atcgttatta      6300
     gccggctggg tcaatccatg aaatgcgcac gcagattcct tgtaactgtc cttcatgtcg      6360
     ttacaataat ctgcgtggtg a                                                6381
//
ID   ULYSSES_LTR repbase;    DNA;    INV; 2136 BP.
XX
AC   X56645;
XX
DT   17-OCT-2002 (Rel. 7.09, Created)
DT   17-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   Ulysses LTR retrotransposon, a long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; ULYSS;
KW   ULYSSES_I; ULYSSES_LTR; reverse transcriptase.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-2136
RA   Bishop G.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (19-NOV-1990). Bishop
RL   J.G., The Johns Hopkins University, Department of Biology, 34th
RL   and Charles Streets, Baltimore, MD 21218 USA.
XX
RN   [2]
RP   1-2136
RA   Scheinker S.V., Lozovskaya R.E., Bishop G.J., Corces G.V.
RA   and Evgen'ev B.M.;
RT   "A long terminal repeat-containing retrotransposon is mobilized
RT   during hybrid dysgenesis in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 87(24), 9615-9619 (1990).
XX
RN   [3]
RP   1-2136
RA   Evgen'ev B.M., Corces G.V. and Lankenau H.D.;
RT   "Ulysses transposable element of Drosophila shows high structural
RT   similarities to functional domains of retroviruses.";
RL   J. Mol. Biol 225(3), 917-924 (1992).
XX
DR   GenBank; X56645; Positions       1    2136.
XX
SQ   Sequence 2136 BP; 617 A; 444 C; 514 G; 561 T; 0 other;
     tgttgcattt gacgttatcg gcagcaccga gggttactca gttggttgcg tgcgatatta        60
     tgggccactg ccgatatctt tttggcatat ggtcggagta tgccgggtga agctgggccc       120
     acggcggacg caaaattttg aagggtggca acgccagaca tgcgatccac ggcgccaaaa       180
     gcgacgattg ctattggccg cccgtttcgc tcttaaaggg aatacgagga gagtggatcg       240
     catgcccttg gatatgccct tggccttcat ttgggccgtt gacccaaaaa aatgcagctg       300
     tgcagatgag cagcaacggt gcccgcctcg caaatgtatg cgtgtgccga aattcggcac       360
     cgatggtgtg gctgaaaaaa aatgtcgagg agttcgattt gttcagcggt taacggcggg       420
     cgtgccagct cgaagtgagc aaaaaagttg gacattgcat ttctgcttga cagagtaaaa       480
     ttttttccct tctgaaaaat taagccggca cataatacca atggcttaac agacgaataa       540
     aagttttgtt tttgtgttct ttgccatgta ataaatttat ataaatcaaa ccgctcgaat       600
     cacaaagaaa atataataaa aaaattgaaa gagacttaaa aatttaagtt gcgacgagag       660
     acgaaccaaa taagccaaaa attaacggct ccggcaccaa ggagaccggc tcgcgcacca       720
     gagaggccca cgaaatattc aaggccagga ttcagtgcag cggcgcaaac cagccatatc       780
     cgcgacgtcc gccagcaagc gtcggcgcaa acgtgaaggc gacgagacga gccaccaacg       840
     accgggctcc aacaacgaag aagtcggtcc acaggcgtag accccggtcc cacatccacc       900
     gtagtgagtc cgttccattg ttctggccca tccctcggtt cgagcccctg gcatgagttc       960
     agaagaattg actcctaatt gcactccctg aaaaggagta gatttttttt tatcgttaaa      1020
     tttggttaat ttgtatttat aaaatatatt catacataca taggcactta cgccgagctt      1080
     cactttagag tgcgagcggt gaggaaaact ccaacggtga tgcatctgcg cctgtaaaat      1140
     aaaaaaaaaa aaaaaatcta aaattaactc ttgcgcgaac tatgctcaca tacttaccta      1200
     atttgaattt acgcatttat atcgcccctt accacccccc agagagctct ttaggtaggg      1260
     taaggtagaa ttaagcgatt taatacatac aatacacaat acgtgacata cccagtttta      1320
     agtaattgtg cgggccattg ttcctaaatc ggggcaacga ttgcctctaa agtgcctcat      1380
     tgcgcgtttc ttttgcggcg actagccaat atccttgtag tgtttcgtcg cctgttccgt      1440
     tcagtgttgt aaaaaaaaaa aaaaaaaatt aattctataa gataagagaa aaatttagga      1500
     attaatgcgc tgtgtcaatt agtataagta tatgcagcag taatacgcac ctgtgaagtt      1560
     aatgaattat ccgcttgcat gagatcctga acagctgcaa gataaatgcc ataagcaatg      1620
     attatgattg ttatacattt taagaaaacg caaccaatta tacgcaccta ttgaaagaaa      1680
     tcatgtccgg ctaaaataat attgctgggg agagtgggca ttatggccga cacgggctaa      1740
     tataggccat ttggtggcca aaatgaggga gacgagtgga ggtgatcgtc tcatggtagg      1800
     gcgggtacgc tgggtccgga accggggccc gatctggaag agtaaggtgg ataaatagtg      1860
     tttttttttg ttaatttata ttgagtgtct tacctttgtt gtttacattt tcatagttgt      1920
     tacagctgtg gattttgttc atgagttagt agttccgaat atttgttatc gattatgcgg      1980
     ttcattttga gtagtgttgt gtgagtctat tttgctacag acgtgtagct ttgttgttat      2040
     cgattgtgcg gactgcgggc cagggatggg accacaccca gagaatccga tgagccagcc      2100
     ggcgcggccc actgagaaac aagcagttcc ctaaca                                2136
//
ID   Utopia-1_AEc repbase;    DNA;    INV; 6514 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_AEc.
XX
OS   Acromyrmex echinatior
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Acromyrmex.
XX
RN   [1]
RA   Nygaard S., Zhang G., Schi�tt M., Li C., Wurm Y., Hu H., Zhou J.,
RA   Ji L., Qiu F., Rasmussen M., Pan H. et al.;
RT   "The genome of the leaf-cutting ant Acromyrmex echinatior
RT   suggests key adaptations to advanced social life and fungus
RT   farming.";
RL   Genome Res 21(8), 1339-1348 (2011).
XX
RN   [2]
RP   1-6514
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [2] (Consensus)
XX
CC   ~92% identical to consensus. One copy is 3' flanked by U2 snRNA
CC   gene fragment.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(189..581,529..2193,1893..5846)
FT                 /product="Utopia-1_AEc_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="VCSVRGCRREDSRRFYKFKFPLNFVKVPKTIVIGSAF
FT                 QKSSVSARSQNHSRSTRVPKTRQPRTSNTIGRYTAASANNYLTVIITGNYT
FT                 VFAQWICYRECTWLLSKFVNFFLTIIGYFFQLRLVVIYEGPVILDTFSNCG
FT                 SSLFMRGQXSKALLVRLNRSALAMADPQVHYIDYPLPPRVKCVKCFGAEGA
FT                 GKVKGEYSDPPHLAKHLKKCHPGDTLNYKCSICDLRGTGKYPLRDVKAHYA
FT                 ECHVSPAVDAAGPSTRGSLGECSGAGQPTASRAAKATTRLAETVGGTDKRR
FT                 AATSGSRQLTLPFAATPSPSTAAGEARAPRSXSTTPTSRSPSYAAVTAGPP
FT                 SMRSTTTSTTARSKTVAKGAAPNTTTTTTARRSGEAAATRKPPTTATVSKP
FT                 RVLSVETVRLPVDDIQRAGVQNAAKPARAPSRPPQRTSPEAGGPRTTGAKE
FT                 KCGEGAYKKLPANSGNPISTRTRRATSVPVEKSEGTARRERVSPHPPPKGI
FT                 DIILSSTSEEEGTPYQPGGVGRLRLRRKKVTGPPPKMTPREGVVTRARRST
FT                 SAPVEKSALDARLTALDRTSSRATGNPTSQIAGGLYTSRGQPERTPPARLP
FT                 SLSPTTRGSPSGSLGEIRTPISPATSLPATLTTCTVTTTTCGSPITSTGFT
FT                 GGVGRLITPPSLPQTNILPTIGEEGTSPCVAVVTTHPRPTGEDAPCEAPQP
FT                 VSDHQRQSIGEPRRDTDTHLACDVATGNAHHLHGDDDHLWKPHNIHGLHRW
FT                 RGEADNTXEPPPNEHPPDHRGGRNVTVRGGRHHPSLGGRSTSPLILPRPTT
FT                 PEPERGQEERRLEGAAQPPTTPVVEGDNQWDGQWTVSVRRRARRQQLNDTS
FT                 PSNSESPPTAGPSRSPRIAPLSALIAASTSRHETSLNLNCTNGNICMDRTP
FT                 PRNILPVXAERRRETSPQDRVEGDIGYGAGKVSAEHPSAPVNVRGVMSRGR
FT                 ATASSIVPPRANRGEGGRQHHSRRRPDAPVGQPSRDHPAPATVARQRRRER
FT                 VAARDALLDRAKDVATIADLEAFAASVAAFFGEDASATGAAARARDRSVRS
FT                 REAGARRGVKGGERPEREGAGRPGSAPADPGASGEARGDWVREAKRLQALY
FT                 RANRRKAVREVLQGPADQCQVPKRQVQEYFERLYSGGEDLAGAGVEAERPD
FT                 PSSPREVSAVLGPLAEREVDRRLRRMNNSAPGPDGVSYRDLRGADRGARLL
FT                 TALYNICLRLEAVPASWKTSNTVLIHKKGDRGMLENWRPLALGDTVPKLFA
FT                 ALLADRLTDWAVTRGKLCSAQKGFLRDEGCYEHNFVLQEVLTHAKRSKRQA
FT                 VVAWLDLSNAFGSIPHATIRRALIRSAVPRGLIAIWDSMYDGCTTRVRTAE
FT                 GHTAPIPIRSGVRQGCPLSPIIFNLAIDSVVRVAAEXNDGYSLHGNTWSAL
FT                 AYADDIALLAQTPEGMERMLASVEAEAASVGLRFNPAKCATLHVGAGNGGR
FT                 VLPTSFQIQGETINPLAQGESYTHLGVPTGFSVDQTPYAAVGDIVSDLRAV
FT                 DRSLLAPWQKIEMLGTFILSRLDFLLRGARVFKGPLTAVDLNIRRHVKSWL
FT                 NLPQRASAEGVYMPPRWGGCGLLPLSDLADVLTVAHAYRMLTVRDGAVREL
FT                 AWESLRGVVGRRIGHAPSCEDIASFLSGSLDGRMRGGGEASLWSSARNAAL
FT                 RQSERLSLRWRWVEATEEMTLECRGPRGAAIKIPPEARGQVVNRLRSAVAE
FT                 HYASRLLSKPDQGKVFEVSSRSRVSNHFIRGGSFTRFADWRFIHKARLDVL
FT                 PLNGARRWEANDKRCRRCGEVSETLPHVLCHCGIHSAAIQLRHDAVLHRLW
FT                 KATRLPGVVRVNQRVEGVSDELGALRPDLVVRHEPSKSVVICDVTVPFENR
FT                 WTAFEDARARKIAKYSPLAEELQRRGYRVVVTAFVVGALGSWDPRNEAVLR
FT                 LLRVGNQYAAMMRRLIVSDTIRWSRDIYVEHVSGTRQYLAPSRPSGDLATP
FT                 PRAVRRRWLAEERSAQDAARRGSDSVSVA"
XX
SQ   Sequence 6514 BP; 1323 A; 1853 C; 1993 G; 1337 T; 8 other;
     ggtgcacaac ggatgcatca tacgtgtacc ggagcatacg ggctgtcacg gcggctgcat        60
     gcgcgatcta gctcggagat tttatttatt tatttattaa tttatttatt tattcatcga       120
     gtgtgagtgt tcgcgttttg ccgagaagcg attttcgtta agtgatacgc gccgcgttca       180
     taggttaggt gtgcagtgta cgtggctgtc gtcgcgaaga ttctcgaaga ttctacaagt       240
     tcaaatttcc gttaaatttc gttaaagttc ctaaaaccat cgtgatcggg agtgcgttcc       300
     aaaaatcatc agtttcggct cgttcgcaaa accactcccg gtcgacccgc gttccgaaaa       360
     ccagacagcc acgtacaagc aatacgattg gtcggtacac tgccgcgagt gcgaataact       420
     atttaactgt tattattact ggaaattaca ctgtattcgc ccagtggatc tgttatcgcg       480
     agtgcacttg gcttttaagt aaatttgtta attttttctt aactataatt ggatactttt       540
     tccaattgcg gctcgtcgtt atttatgagg ggccagtkat ctaaggccct tttagtcaga       600
     ctaaaccgta gtgcactcgc catggcggat ccacaagtgc actatataga ctacccgctg       660
     ccccctagag tcaaatgcgt aaaatgtttc ggtgctgagg gggcaggcaa agtaaagggc       720
     gaatacagcg acccgccgca tttagcaaaa catctgaaaa agtgccaccc gggagacaca       780
     ttaaattata aatgctcaat ttgtgatcta agggggaccg gtaaataccc ccttagagat       840
     gttaaggcac attacgccga gtgccatgtg tctcccgcag tggatgcggc gggtccaagc       900
     actcgcggca gcctcggcga gtgcagtggt gcgggtcaac cgacagccag ccgcgcggct       960
     aaagcgacca cgcgattggc ggagacggtt gggggtacgg ataagcgccg tgccgcgaca      1020
     tcgggatcgc ggcaactcac gctgccgttc gcagccaccc catcgccatc cacagcagcc      1080
     ggtgaggcaa gggccccaag aagcgmgtca acgacaccga cgagcaggtc cccctcatat      1140
     gcggcagtca ctgcgggccc gccatcgatg aggagcacga caacttccac cacagcccgc      1200
     agtaagactg tcgcgaaagg cgccgcgccc aacacmacga cgacgacaac ggccaggaga      1260
     tccggcgagg ccgccgcaac gaggaagccg cctacgaccg ccacggtgag taaaccgcgt      1320
     gtgttgtcgg tagaaactgt taggttgcct gtcgacgaca tccagcgagc aggcgtgcaa      1380
     aacgcggcca aaccggcgcg cgctccctct cgccccccgc agagaacatc accggaggcg      1440
     gggggtccaa gaacaacggg cgcaaaggag aaatgcggag agggagcata caagaagttg      1500
     cccgcaaaca gcggcaatcc aatttcaacc aggacgaggc gggcaactag cgtgccggtt      1560
     gagaagagcg aaggcacggc aagacgggag cgcgtctccc cacaccctcc tcccaaagga      1620
     attgatatca tcctatcgtc gacatcggag gaggagggca cgccatacca gcccggcggc      1680
     gtggggagac taagactaag gaggaaaaag gtgaccggac cacccccaaa gatgacaccc      1740
     agagaggggg tggtcacaag agccaggcgg tccaccagcg ctcccgtcga gaagagtgcc      1800
     ttggatgcac gcctgacggc tctggaccgg acatcgtcca gagcgacagg caacccgacg      1860
     tcgcaaatcg cagggggcct ttacaccagt agaggccaac cggagaggac gccccctgcg      1920
     aggctcccca gcctgtctcc gaccaccaga ggcagtccat cggggagcct aggcgagata      1980
     cggacaccca tctcgcctgc gacgtcgcta ccggcaacgc tcaccacttg cacggtgacg      2040
     acgaccacct gtggaagccc cataacatcc acgggcttca caggtggcgt ggggaggctg      2100
     ataacaccwc cgagcctccc ccaaacgaac atcctcccga ccatcgggga ggaaggaacg      2160
     tcaccgtgcg tggcggtcgt caccacccat ccttaggcgg caggagcacg tctccgctca      2220
     tcctaccaag gccaacgaca ccggagcctg agcggggaca agaggagcgg cggctagaag      2280
     gcgcggcgca gccacctacc acacccgtcg tcgaggggga caaccagtgg gatggccagt      2340
     ggacggtgag cgtgaggaga agagcgagga ggcaacaact gaacgataca tccccctcca      2400
     actccgagtc cccgccaacc gctggaccat cgcgttcgcc gcgcatagcc ccactatctg      2460
     cgctgatagc ggcgtcgacg agccgccatg agaccagctt aaatctcaat tgcacgaacg      2520
     gcaatatttg catggaccga actccgcccc gtaacatttt gccggtargg gcggagcgcc      2580
     gtcgcgagac atcgccacag gatcgcgtgg agggagacat cggttatggt gctggaaagg      2640
     taagtgccga acacccgagt gctcccgtaa atgtccgtgg tgtgatgtct cgagggagag      2700
     caaccgcgtc atccatcgtg ccaccgcgag ccaaccgtgg ggagggcggt cggcagcatc      2760
     atagtcggcg gcgtccggac gctcctgtcg gtcagccgtc gcgggatcac ccggcgcctg      2820
     cgactgtcgc gaggcagcgt aggcgtgagc gggtggccgc ccgcgacgcg ctgctcgatc      2880
     gggctaagga cgtcgctacg attgcggatc tggaggcgtt cgcggcttcg gtcgcggcgt      2940
     tcttcgggga ggatgcatcg gccactggtg ctgcagcccg cgctcgcgat cgttcggtac      3000
     gctcacggga ggcgggtgcg cgtcgggggg tgaagggagg tgagcgtccg gagagagagg      3060
     gcgccggtag gccggggtca gcgccggctg accccggagc gtcgggagaa gcacgcgggg      3120
     actgggtgcg cgaggccaaa cgcttgcagg cgctgtacag ggcgaaccgc cgcaaggcag      3180
     tgcgagaggt gctccaggga cctgccgatc agtgccaggt gcctaaacgt caggtccagg      3240
     agtacttcga gcggctgtac agcggcgggg aagacctggc tggcgccggc gtggaagccg      3300
     aacgccctga cccctcgagt ccgcgtgagg tatctgcggt cctgggtccg ctcgcggagc      3360
     gagaggtgga ccgtcggctc cggcgtatga ataactctgc gccgggtccc gacggtgtat      3420
     cctatcgtga cctccgtggg gcggaccggg gagcgcggct cctcacggcg ctctacaaca      3480
     tctgcctgcg gctcgaggca gtccccgcgt cctggaagac ctccaacact gtgttgatac      3540
     acaagaaagg agaccggggc atgttggaga actggcgccc tctcgctctg ggggacaccg      3600
     tccccaaact cttcgccgcg ctcttggccg accgattgac cgactgggcg gtcacccgcg      3660
     ggaagctctg ctccgcgcag aagggcttcc tgcgggacga ggggtgctac gagcacaact      3720
     tcgtcctgca ggaggtcctg acgcacgcca agcgctctaa gcgccaggcg gtcgtcgcgt      3780
     ggctggacct gtccaacgcg tttggatcga tcccgcacgc gacgatccgc cgcgcgctta      3840
     taagatccgc ggtgccacgg ggtctcatag cgatatggga ctccatgtac gatggttgca      3900
     cgacgagggt gcgaaccgcc gagggtcaca cagcacccat ccccatccgg tcgggcgtcc      3960
     gtcagggttg tccgctaagc cctattatct tcaacctggc catcgactcg gtcgtccgtg      4020
     tggcggccga gwcgaatgac gggtattccc tccacggaaa tacctggtcg gcattggctt      4080
     acgcggacga catcgcacta ctggcccaga cgcccgaggg gatggagagg atgctagcct      4140
     ctgtggaggc ggaggcagcg tcggtggggc tgcggttcaa ccctgcaaag tgtgccaccc      4200
     tgcacgtcgg tgcggggaat ggcggcaggg tcctaccgac gtcattccaa atccaggggg      4260
     agacgatcaa ccccctggct cagggtgagt cgtacaccca ccttggcgtt ccaacggggt      4320
     tctccgtgga ccagacgccc tacgccgccg tcggggacat cgtctcggac ctgcgcgctg      4380
     tcgaccgctc actccttgcc ccgtggcaga agatagaaat gctggggacc ttcatcctat      4440
     ccaggcttga ctttctgctc cggggggcca gagtgttcaa gggtcccctc acggccgtgg      4500
     accttaacat ccgwaggcat gttaaatcct ggcttaacct ccctcagcga gcaagcgcgg      4560
     agggagtcta catgccgccc cgttgggggg gatgtggact cctgccgctc tctgacctcg      4620
     ccgacgtcct cacggttgcc cacgcgtacc gtatgttaac ggtgcgcgat ggcgccgtga      4680
     gggagttggc gtgggaatcg ctgaggggag tggttgggcg caggatcggc cacgccccta      4740
     gttgcgagga tatcgcctcc ttcctatccg gctcgctgga tggaaggatg aggggcggag      4800
     gggaggcttc gctctggtcg agtgcgcgga acgctgcgct cagacagtcc gagaggttgt      4860
     ccctgcgttg gcggtgggtc gaggccacgg aggagatgac gttggagtgt cgagggccca      4920
     ggggggcagc gattaagatt ccgcctgaag cgcgcggtca ggtagtgaat cggttgcgct      4980
     cagctgtagc agagcactac gcaagtaggt tgcttagcaa gcctgatcag ggtaaggtct      5040
     tcgaggtgtc gtcgcggagc cgagtgagca atcactttat ccgcggcggc agcttcactc      5100
     gcttcgccga ctggcgcttt atccataagg cccggttaga tgttcttcct ctcaacggcg      5160
     cacgacgttg ggaggccaac gacaagcgct gtcggcgatg cggtgaggta tcggagacat      5220
     taccccatgt gctctgtcac tgcggcatcc actccgccgc gatacagctg aggcacgacg      5280
     ctgtcctgca ccgcctttgg aaggccactc gccttccagg ggtagtgcgg gttaaccagc      5340
     gggtggaggg cgtcagcgac gaattggggg cgctacgacc tgatctcgtg gtcaggcacg      5400
     agccctccaa aagtgtcgtc atctgcgacg tcacggtgcc attcgaaaac cgctggaccg      5460
     ctttcgagga cgccagggcg aggaaaatcg ccaaatactc gcctctggca gaggagctac      5520
     agcggcgagg gtaccgtgtc gtcgtgacgg ccttcgtcgt cggcgccctc ggctcgtggg      5580
     atccgaggaa tgaggcggtg ttgagactgc tgcgggttgg caaccagtat gcagctatga      5640
     tgcggcgcct cattgtctcg gataccattc gctggtcacg cgacatatat gtggagcatg      5700
     tgtccggcac ccgccagtac ctggctcctt cccgtccctc tggggatctc gcgacgccgc      5760
     cgagagcggt tcgtcgacgc tggctcgccg aggagagaag cgcacaggac gcggcgcgtc      5820
     gcggttcgga tagtgtgagt gtcgcgtaaa ttattttgtc tttgtcttgg cccccccttt      5880
     ttaaaccaag caggagagag tggcccaatg cccaactatt atatattaac tatttactgt      5940
     gatatttatt atttgactgt tgggcgggcc cctctctgct ggttttattt atatatattt      6000
     tttactcgcg tactttttgt actactctat ttttcttttt attttagcta tgctattttt      6060
     atctctttct ttgtctctat tttctttctt tttttctttc cttttctttt ctttctttta      6120
     ttcttctttt atttatcttt ttttcttttc tgttgtgggg ccctgaccgt ccgagtgtga      6180
     atgccgcgaa aaacaatatt atgttttata cgagtgtgca tgtgcgtgat atatttatct      6240
     attttatttt atttatttat tataatttat tgccgcgcgc gctcctccgg gacttttatt      6300
     cgttgacaat actgtgatat ttttctgckc aggctggggg ggcttgcccc ccagcccctt      6360
     agttttaatt gcctatgcgg ggggggcttt tgtcccccgc aaatgtatat atatatatat      6420
     ttagcgcgcg gcttagccgc ttttgtttgt attaccccag aggggaattg tccctctggg      6480
     gaaaaaaaat gattggaaaa ataaagtgag ctaa                                  6514
//
ID   Utopia-1_APi repbase;    DNA;    INV; 3109 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-3109
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. Its 3' end is followed by a U2
CC   snRNA gene. The 5' end is uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2946
FT                 /product="Utopia-1_APi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="RPRLRPTTTTSSLPTEVVGSPELEPNVSPRRTAAPSH
FT                 SSSPSSTDTSPIHDSEPDMEDEDAVNASPMRGDDDLPTHGEALILSPNDTT
FT                 PIHAFLPQLRALARAPTTGATWDEFCEVMEGVTALAAATAKLPVRTEGSTN
FT                 KRAAVDPADAQGIQTLYRRNRRSAIRAILSGANVPCGAGIRDATDHFTGVW
FT                 SPSTCDATIFPRTDGRTPVPTGPFSACVVAKRLNKFENTAPGDDGLTYHHW
FT                 RRLDPSCSLLTEVINTCLKHRRVPPAWKKAVTVLIYKKGDRSDLNNWRPIS
FT                 LCRTIYKLYAGCIAGRLTDWIVSNSALSPCQKGFLPADGAFEHVHTLNREL
FT                 EKARTGHSDKCVAWLDVSNAFGAIPHLALETAIENCGAGEGLLQIVRDLYN
FT                 GATSSIIVAEGKTPDIPVQSGIRQGCPLSGILFIMAIDPIVSALQGQDADH
FT                 RVLAFADDLCLLADSAPALQLKVEEARAGLERFGLKINASKCASLHLSGRP
FT                 PVGVRDSVFTILGAPMKPLAEGDAAAFLGAQVGFHVIPHKSTLADITELGL
FT                 KIARSKLAPWQRIDALKTFFFPSAVHLQRMGTFAKTEWKTIDDILRPEIKA
FT                 TLNLPQEASNDYIYGSTLRGCCGITKLAEDSDIAAIDSAFKLLTSPDGRVT
FT                 REAVDHVRSVTCRRIGRTPSNSEVGSYLSGDNEGPFRDTRGSGVASVWSRA
FT                 RNASGRLAASWSLDGPPSISHAGTTLRAKQRREVMKTIRDHFRIARGQALI
FT                 DKPDQGRAIECVAAHAASSHFLRAGDFCRFADWRFVHRARLNLVPLNGSSS
FT                 WRTGDRRCRRCGNNIESLAHVVNHCMRYTSLYMARHNSLVARLKKAAAGKF
FT                 EVVSENQVIGVQRLRPDLVLRKGTTTLIIDATVPFDNRIKAFEEAAAEKKA
FT                 KYEDLRKEIANDHPGEVSVFPFIVGSLGSWDPNNDVLVRQLCSRSYAKLLR
FT                 KLCVSEVIGYSRDVFTEHISGVRARHG"
XX
SQ   Sequence 3109 BP; 729 A; 936 C; 820 G; 624 T; 0 other;
     cgcccccggc tacgccctac cacgaccacc tcctcactcc caacagaggt cgtcggcagc        60
     ccagaattag aaccgaatgt gagcccgagg agaacagctg cgccctcaca ctcttcatct       120
     ccgtcatcca ccgacaccag tcccatccat gactccgaac ctgatatgga ggatgaggac       180
     gccgttaacg cgagccccat gaggggtgac gacgacctgc ccactcatgg tgaagcacta       240
     attctatcac ccaacgatac cacaccgata cacgcattcc tccctcaact ccgtgcactc       300
     gccagagccc caaccacggg ggcaacttgg gacgagtttt gcgaggtcat ggagggagtg       360
     accgccttgg ctgccgctac agccaaactc ccagtcagga cagaggggag taccaacaag       420
     agagcggctg tagaccctgc cgacgcccag ggcatccaga cactctaccg cagaaaccgg       480
     cgcagcgcaa tacgagcgat cctctctggc gcgaacgtcc cgtgtggtgc agggatccga       540
     gatgccacag accactttac cggagtctgg tccccctcca cctgtgacgc cacgatcttc       600
     ccccgtacgg atgggcgcac tcctgtccca actgggccct tctccgcgtg tgttgttgca       660
     aaacgactga acaagtttga aaacacggcc cctggcgacg acggcctcac gtatcatcat       720
     tggagacgcc tcgatccgtc atgcagttta ctaactgaag tcataaacac ctgtttaaaa       780
     caccgccgtg tcccccccgc gtggaaaaag gcggtgacgg ttttaattta caaaaaaggc       840
     gaccggagcg acctgaacaa ctggaggcca atatccctgt gccggaccat ttacaagctc       900
     tatgctggat gcatcgccgg tcggcttact gattggattg tgagcaacag cgcactgagc       960
     ccctgccaga agggttttct ccccgcggac ggtgcattcg agcacgtcca cacattaaat      1020
     cgcgagctgg agaaggccag gactggccac tctgacaaat gtgtggcgtg gctcgacgtg      1080
     tccaacgcgt tcggggcgat cccccacttg gcgctggaga ccgccattga aaactgtggg      1140
     gctggcgagg ggctgctcca gattgtacga gacctctata acggcgccac atcctctatc      1200
     attgtcgccg aggggaagac ccccgacatc cccgttcagt ccggaatccg tcagggatgc      1260
     ccactcagtg gaattctgtt tattatggcg atcgacccaa ttgtgtccgc tttacagggg      1320
     caggatgccg accaccgggt cttggccttt gctgatgacc tctgtctgct tgccgacagt      1380
     gcccctgccc ttcagctaaa ggtcgaggaa gcgcgagccg ggctggaacg ctttggtctc      1440
     aagatcaatg ccagcaagtg cgcctccctt cacctttccg gacgaccacc cgttggcgtg      1500
     cgggacagcg tttttacaat ccttggggct ccgatgaagc cgctagctga aggcgacgcg      1560
     gccgcgttcc ttggcgccca ggtgggtttc catgtgatcc cccacaagtc cacactagca      1620
     gacattaccg agctgggact caaaattgca aggagcaagc tagctccatg gcaaaggatt      1680
     gacgctctga aaaccttttt tttcccctct gcggtccacc ttcaacgtat gggaacattt      1740
     gcaaaaacag agtggaaaac aatagacgac atattacgcc ccgaaatcaa ggctaccctc      1800
     aacctcccgc aagaggcatc gaacgattac atatacggtt ccactctgcg aggctgctgc      1860
     ggaataacga agctggctga ggactctgac attgcagcca tagatagcgc ctttaagcta      1920
     ctcacctccc ccgacggacg agtcacgagg gaagcggtcg atcatgtgag gagcgtcacc      1980
     tgccggagga ttggccgaac tccttccaac agtgaggtcg gtagctacct atcaggtgac      2040
     aatgaaggcc ccttccgaga tacccggggc agtggagttg ccagtgtatg gtcccgcgcc      2100
     cgcaacgcat ccgggagact agccgcatct tggtccctgg atggcccccc ctccatctcc      2160
     catgcgggaa ctaccttgcg cgcgaagcag aggagggaag tcatgaagac catacgcgac      2220
     catttccgca ttgcgagggg ccaggcgctc atcgataaac cggaccaagg cagggccata      2280
     gaatgtgtag ctgcgcacgc cgcgtccagc cactttctcc gagcgggcga cttctgccga      2340
     tttgctgact ggaggttcgt gcatagggca aggctgaacc tggtgccgct gaacgggtcc      2400
     tcgtcctgga ggactggtga ccgccgatgt cgacggtgtg ggaataatat agaaagcctc      2460
     gcccacgttg tcaaccattg catgcggtac accagcctct atatggccag gcataactct      2520
     ctggtggcca ggttgaagaa agcagcggcc gggaaattcg aggtcgtgtc tgagaaccag      2580
     gtgatcggcg tacaacgcct caggcccgac cttgtgctca gaaagggcac cacaacacta      2640
     atcattgatg ccacagtacc cttcgacaat agaatcaagg cgtttgagga agctgccgct      2700
     gagaaaaagg ccaagtatga ggatctaagg aaggagatcg caaatgacca ccctggggaa      2760
     gtctcagtgt ttccgttcat tgttggctct ttgggctcat gggatccgaa caacgatgtg      2820
     ctagtgagac agctttgcag cagatcttat gcgaaactct tgcggaagct atgcgtcagc      2880
     gaagtcatcg gatactctag agacgtcttc accgaacaca taagtggggt ccgagcaagg      2940
     cacggctgag ctggatcatt cgacccaccg tcaccatcgt catgcagttc actattacaa      3000
     ccttttgtca tttcataagt aaaaaacctc cgctacttgt accccccccc cccatgtttt      3060
     ttgtcctccc catgtctgta ttcaccataa acattaacaa ataaataac                  3109
//
ID   Utopia-1_APl repbase;    DNA;    INV; 995 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_APl.
XX
OS   Agrilus planipennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus.
XX
RN   [1]
RP   1-995
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   It is a transcribed sequence.
CC   GAAB01006879 and GAAB01011383.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(2..250,254..994)
FT                 /product="Utopia-1_APl_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="ARRAGRVDWPXVFDQVERPRTSNDNLCRPIESEEVIA
FT                 CLSRRSNTAPDPDGVTYADLKKADPGARVLTALMNAVWRTEAAPASKESNT
FT                 ILLYKKGDPMDIRNWRPISLGDTVPKLFAAILLNRVKKWAVTNHRFSDAQK
FT                 GFLQFEGCFEHNFVLQEIIRSAKKKKGKLAIAWLDLTSAFNSVPHSSIHRA
FT                 LEGHGVPAKVRNIIASLYADMRTRVRAAGGETAPICIQSGVRQGCPLSPDI
FT                 FNLTLEVVLRCMKKTECGYMFEGRRYTIFAYADDVAIVSDSPEGLRRLLRA
FT                 AVEGATAVGLTFNPNKCATLHVDGDRVLPTNSASSSRP"
XX
SQ   Sequence 995 BP; 239 A; 277 C; 300 G; 178 T; 1 other;
     tgctcgtaga gctggaagag tagactggcc gaangttttc gatcaagtgg agcgaccccg        60
     gacgagcaac gacaatctgt gcaggccaat tgagtcggaa gaggtgatcg cctgcctgag       120
     ccgccgatcc aacacggcgc cggacccaga cggtgtcaca tacgccgacc tcaagaaggc       180
     cgatcccggg gcacgtgtgc tgacagcact aatgaatgct gtttggcgta cagaggcagc       240
     tcccgcttcg tgaaaggagt caaacaccat tctcctgtac aagaaggggg acccgatgga       300
     cattcgcaac tggaggccga tctctcttgg agacacggtc ccaaagctgt tcgctgccat       360
     actcttgaac agagtcaaga agtgggcggt gaccaaccat cggttcagcg acgcacagaa       420
     gggcttcctg caattcgagg gctgcttcga gcacaacttc gtcctgcagg agataattcg       480
     cagcgccaag aaaaagaaag gcaagctagc gatcgcctgg ttggacctga cgagcgcgtt       540
     caactctgtg cctcactcgt ccatccaccg agccctggaa ggtcacggag tcccagcaaa       600
     ggtgagaaac atcatcgcca gcctgtatgc agatatgagg acacgtgtgc gggctgctgg       660
     cggagaaaca gcacccatct gcatccaatc gggggtccgg cagggctgtc cattgagccc       720
     agacatcttc aacctcactt tggaggtagt gctacgatgc atgaagaaga cggagtgcgg       780
     ttacatgttc gaaggcaggc gctacaccat ctttgcgtat gccgacgacg tggcgatcgt       840
     gtcggactct ccggagggac tgaggagact gctgcgagcg gcggtggagg gcgcgacggc       900
     agtgggactg acgttcaacc cgaacaaatg tgccacactt cacgtggacg gcgacagggt       960
     cctgccgacc aattcagcat ccagcagtcg cccat                                  995
//
ID   Utopia-1_CFl repbase;    DNA;    INV; 5762 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_CFl.
XX
OS   Camponotus floridanus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.
XX
RN   [1]
RP   1-5762
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-5762
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [2] (Consensus)
XX
CC   Not target-specific.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(317..1663,1667..5167)
FT                 /product="Utopia-1_CFl_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="CFRWVHGCTGPAGGGFRPGVVGVRRGVIARPPVRLAA
FT                 TRVALHGSGARDSDNTTCTTTASTSATPPARTSPSYAAVTAAPGPSTCRSS
FT                 PSAAVTTAAATSSAAATAVTGGTAAILKSATXGAPAAATTGLKAHPQRKGR
FT                 LSLKRGAANKKSSPPASREARGSPRTPSGEANGPSRRTSVTPPTTTSSAGS
FT                 TYHPRRRRSSSVPLEKSGASRPMRGPPLPSPESADDTPTFGGRGGERRRSP
FT                 ERTPPNTTRAGPRIRSQTRAASASAAKCATEARTQVRPSAKSASRGPRRTS
FT                 EKKRSPGAQPASTTRKAGTAVRDLSAALTPRATEGGGAQGAARTPPLQRGT
FT                 TPPTRHTPTPPPNIRGGPVGGQRSPPAMPAVSSAPATLTTSTVTTVSCGSP
FT                 VMSTGFPAGRRDTPPRPPRLPTIAEVSPCLVEQRMRREERTPTPPGGRSGG
FT                 IRRRAQRSSEGDSGEEDEPWRVRLGRRARRRLSGGSSGGGSPAAAGRGPVS
FT                 GPPPLQAPANLISLVRPCTIXLQRTLVRAITGVGAGVPPQRTSVEGAPGER
FT                 AERPGGPGGHPSAPVGVSGVMGRRRGGRVTGGVGASRETPAGARSSGGGEH
FT                 PRGPRRVAGPSAQPSGGRSAPAAVARLRRRRRVAARDVLVGRAEAVTSTAD
FT                 LEEFAASVAAFFGEEASGRVDGDASGVRDRPVRSREAGVRRGEGGVSARDG
FT                 GSVRGGRGSAPAGPPQSGEGRGGWVREATRVQALYRTNRRKAVREVLQGPA
FT                 EFCQVPKDRVHAYFERLYRGGEDLDGSGAEGERTDPSVDGGEFAYLMDPFT
FT                 EREVDRRLRRMTNSAPGPDGITYRDLRGADPGARLLAALFNACYRLEAVPA
FT                 SWKTSNTVLVYKKGDRDSLENWRPLALGDTAPKLFAALIADRMTEWAVTNN
FT                 KLCPAQKGFLRDEGCFEHNFVLQEILTDARRTRRQAVVAWLDLSNAFGSVP
FT                 HAAIRRALVRSGVPGGLVNVWNSMYDGCSTRVRTAEGYTTPVLIRSGVRQG
FT                 CPLSPIVFDLAIDSVLRAVTAVDAGFDLLGSRHSVVAYADDIALVADSPEG
FT                 MRRLLAVAEGAASSVGLRFNPAKCATLHLAAGSGGRVLPTTFVIQGQPVHH
FT                 LSSGEPYRHLGVPTGSSVDQTPFATIGGLLEDLRAVDQSLLAPWQKLEVVA
FT                 TNILPRLDFLLRGATVGKKPLKAADLQVRRMAKSWLNLPQRASAEVVYLPP
FT                 RVGGCGLLPLADLADILSVSHAFRMLTAGCDTVRNLAWASLRGAVARRIGG
FT                 PPTNEDIAAFLSGSLEGRLRGGGESSLWSRARNAARRQSERLSLRWRWCEA
FT                 TEELMVECRGPRGDAVKVPPGARNQVVTRLRSAVAAYYXXTLTSKPDQGKV
FT                 FEVSSRAGVSNHFVRGGSFTRFADWRFIHRAKLDVLPLNGARRWGEADRRC
FT                 RRCGLAAETLPHVLNHCGVHSAAIQLRHDAALHRLWKACRMPGDKRVNRRV
FT                 EGIDGEPGELRPDLVVRHEPSKCVVICDVTVPFENRWQSFEEARARKVAKY
FT                 SSLAEALQRKGYRVVVTAFVVGSLGSWDPANEAVLRVLHIGSAYASLLRRL
FT                 VVSDSIRWSRDIYVEHVSGVRQYAAPSRPSVGGVLATPPRAIRRRGPTE"
XX
SQ   Sequence 5762 BP; 999 A; 1741 C; 1961 G; 1052 T; 9 other;
     tgcccgcgtc tccgaaagtc gtggtcctcc cgtacctgtt cccagcgagg gtgcaatgcc        60
     cccgctgttg gttgagcgag gacccggagg taaagtcacg gggcgacttc tgcgacccgc       120
     cccacttagc gaaacatctt aaagcgaaac accccgggga tacgattacg tacaaatgtt       180
     ccgaatgtaa tttccgcggg tacggggcct accccgtgag gcctgtcaag gcacattatg       240
     aaaaagaaca cgcgattccc cggggccgag cgggtcgcag cacggacgga gcgagtaact       300
     ccaataacaa tattaatgtt tccggtgggt ccacgggtgc acgggaccgg ccggcggcgg       360
     gttccgcccc ggggtcgtcg gcgtccgccg gggcgtcatc gcgaggccgc ccgtccgact       420
     cgcggcaacc cgggttgcgc ttcacggctc cggcgccagg gacagcgaca acaccacctg       480
     cacaacaaca gcatccacat ccgccacacc accggcgagg acgtccccct cgtacgcggc       540
     cgtcaccgca gcaccggggc cgtcgacgtg caggtcatcg ccgtcggcgg ccgtcacaac       600
     agcagcagca acatcatcag cagcggcaac agcggtgaca ggtggcacgg ccgccatctt       660
     gaagagcgcc acgsccggcg cgccggccgc cgcaactacg ggccttaagg cgcatccgca       720
     acgtaaaggc aggctttcat tgaagcgcgg cgcagccaat aagaagagct cgcctcccgc       780
     gtcaagagag gcacgcggat cgcctcgcac accatccggc gaggcgaatg gaccatccag       840
     gaggacctcc gtgaccccgc caaccaccac cagctcggcg gggtccacat atcatcccag       900
     gagacggagg tccagcagcg tgcctctcga gaagagcggc gcgtccaggc cgatgcgcgg       960
     gccccccctc ccatcaccgg agtccgccga cgatacaccc acgttcggcg ggaggggggg      1020
     cgagaggagg aggtcgcccg agaggacccc gccaaacacc acccgggcgg ggcccagaat      1080
     caggagccag actcgggcgg cgagcgcatc ggccgcgaag tgcgcgacgg aggcgaggac      1140
     gcaggtcaga ccatcggcca aaagtgcatc gcgggggccc cgaagaacat cggagaagaa      1200
     gaggagccca ggggcccagc cggcatccac cacccgcaaa gccggcaccg cggtgcgcga      1260
     cctgagcgcc gcgctgacac cgcgggcgac agaaggaggg ggggcccagg gggcggcgag      1320
     gacgcccccc ctgcaacgtg ggaccacgcc ccccacaaga cataccccca ccccgccgcc      1380
     gaacatccgc ggcggtcccg tggggggcca gaggtcgcca ccagcgatgc ccgcggtgtc      1440
     gtcagcgcct gccacactca cgaccagcac ggtgacgaca gtttcgtgcg ggtcccccgt      1500
     gatgtccacg gggttccccg cggggagacg ggacacgccg ccccgtcccc cccgcctccc      1560
     caccatcgcg gaggtgtcac cgtgtctggt cgagcagcgg atgcgtcgag aggagaggac      1620
     ccccacacca cccgggggga ggagcggcgg catccggagg aggtaggcgc agaggagttc      1680
     ggagggggac agtggagagg aggatgagcc gtggagagtg cgcctgggga gaagagcgag      1740
     gcggcggctg agcggtggct cctccggcgg cgggagtccg gcggccgcgg ggcggggccc      1800
     ggtgtccggc cctcccccgc tgcaagcgcc ggcgaattta atctcacttg ttagaccgtg      1860
     tacgatcaak ttacagcgga ctttagtccg cgctattaca ggggttggag cgggcgtccc      1920
     acctcagagg accagtgtgg agggagcacc gggagagcgt gctgagcgac ctggaggacc      1980
     aggaggccat ccgagtgctc cggtgggtgt ctctggggtg atgggtcgtc ggcggggagg      2040
     acgcgtaacc ggcggcgtcg gagcgagcag ggagacaccg gcgggtgcga ggagcagcgg      2100
     aggcggggag cacccccgag gcccgcggcg tgtcgccggc ccgtctgccc agccatccgg      2160
     tggccggtct gcccctgcgg cagtcgcgag actacgcaga cggcggcgcg tggctgcgcg      2220
     cgatgtgctg gttgggcgtg ccgaggccgt cacctcgact gcggacctgg aggagtttgc      2280
     ggcttcggtc gcggctttct tcggggagga ggcatcgggg agggtcgacg gggatgcgtc      2340
     cggcgtccgc gaccgtccag ttcggtcgcg tgaggcggga gtgcggcgcg gcgagggagg      2400
     ggtgtcggcg cgggacggcg gcagtgtaag ggggggaaga gggtcggcac cggccggccc      2460
     tccgcagtct ggagaaggac gcggtggctg ggtgcgcgaa gccacgcgtg tgcaggcgct      2520
     gtacaggacg aaccgacgca aggcggtccg agaagtactg caggggcccg cagaattctg      2580
     ccaagtgccg aaggatcggg ttcatgcgta cttcgagcga ctgtatcgcg gaggggagga      2640
     cctggacggt tccggcgcgg agggggagcg cactgacccc tcggtcgatg ggggggagtt      2700
     cgcgtacctc atggatccct tcacggagcg agaggtggac cgtcggctcc ggcgtatgac      2760
     gaactctgcg ccgggtcccg acggtatcac ttaccgtgac ctccgtggag cggatcctgg      2820
     ggcgcggctc ctcgccgcgc tgtttaacgc gtgctatcgg ctcgaggcag tccccgcgtc      2880
     ctggaagacc tccaacaccg tattggtgta taagaaaggg gaccgcgatt ctttggagaa      2940
     ctggcgccct ctcgcgctag gagacaccgc ccccaagctt tttgccgcgc tcatcgccga      3000
     tcgtatgacc gaatgggcgg tcaccaacaa caagctctgt ccggctcaga agggattcct      3060
     gcgggacgag gggtgttttg aacacaactt cgttttgcag gagatcctga ctgatgcccg      3120
     gcggactcga cggcaggcgg tcgtcgcgtg gctggacctg tccaatgcgt ttgggtcggt      3180
     cccgcacgcg gcgatccgcc gcgctctcgt tcgctccggc gtgccggggg gcctcgtcaa      3240
     tgtgtggaat tccatgtatg acgggtgctc cacgcgggtc cgaaccgccg agggctacac      3300
     cactcctgtc cttattcgct cgggtgtgcg gcagggttgt ccgctgagcc cgattgtatt      3360
     cgacctcgct atcgactcgg tactgcgtgc agttaccgcg gtcgatgcgg ggtttgatct      3420
     gttgggctct cgccacagcg ttgtggcgta cgcggacgac attgcactcg tcgcagattc      3480
     gcccgaggga atgcggcggc ttctggccgt cgcggagggc gcggcgtcgt cggtggggtt      3540
     gcggttcaac cctgccaaat gtgccaccct gcatctcgcc gcaggctctg gcggcagggt      3600
     cctgccgacg acgttcgtca tccaggggca gcccgttcat catctgtcat cgggkgagcc      3660
     ttatcgacat cttggtgtcc cgaccgggtc ctcggtcgac caaacaccat tcgctacaat      3720
     cgggggcctc ctcgaggatc tccgagcggt ggaccaatcc ctcctcgctc cgtggcagaa      3780
     attggaagta gtggcaacca acatcctgcc acggttggat tttctgctgc ggggggccac      3840
     ggtggggaag aaacccctga aggccgccga cctgcaggtc cggcggatgg ccaagtcctg      3900
     gctcaacctc ccgcagagag ccagcgcgga agtggtctac ctccccccga gagttggggg      3960
     ttgtggacta cttccgctag ctgacctcgc ggatatcctg tccgtgtcgc acgccttccg      4020
     tatgcttacg gctggctgcg acacggtcag gaatctcgcg tgggcgtctc tgcggggagc      4080
     tgtagcccgg cgcattggcg gtcctccgac caacgaggac atcgcagctt tcctctcggg      4140
     ctcgctcgag gggaggctgc gaggcggggg tgaatcctcc ctgtggtcga gggcgaggaa      4200
     tgccgcgagg aggcagtccg aaaggttgtc ccttcggtgg cggtggtgtg aagcgaccga      4260
     ggagctgatg gtcgagtgcc ggggtcccag gggcgacgcg gtaaaagtcc cacctggtgc      4320
     tcgcaaccag gtggtgaccc gtctgcgctc agcggtggcg gcatattact wtmacacctt      4380
     aacatctaaa ccggaccagg ggaaggtgtt cgaggtgtcg tcgcgggctg gggtgagcaa      4440
     tcacttcgtc cgcggcggca gcttcacccg cttcgccgac tggcgattca tacaccgagc      4500
     caaactggat gtcctccctc tcaacggtgc acgccgttgg ggggaggcag accgaaggtg      4560
     tcggcgttgc gggttggcag ccgagaccct tccccatgta ctaaatcatt gtggggtcca      4620
     ttctgccgcc attcagctga ggcacgacgc cgccttgcac cgcctctgga aggcttgccg      4680
     gatgccaggg gataagcggg tgaatcggcg agttgaggga atcgacgggg aacctgggga      4740
     gctacgacct gaccttgtgg tcaggcacga gccctccaag tgcgtcgtca tatgcgacgt      4800
     cacggtgccc tttgaaaatc gctggcagtc gttcgaggag gctagggcga ggaaagttgc      4860
     caaatactcg tccctagcgg aggcgctcca gcgcaaaggg taccgcgtcg tcgtgacggc      4920
     cttcgtcgtc ggttccttgg gctcgtggga tccggccaac gaggcggtgc ttcgggtgtt      4980
     gcacattggc agtgcatacg cctctttgtt gcgccgtctc gttgtctcgg attccattcg      5040
     ctggtccaga gacatttatg tggagcatgt gtctggcgtt cgccagtacg ccgccccttc      5100
     acgcccctct gttggtgggg tgctcgctac gccccctcgc gcaattcgcc ggcgcgggcc      5160
     caccgagtag gagcggcact agcgtccatc gtgatgttgt atagtcttct ttgttgtcgt      5220
     gtgtgaatgc cgcgtaattt attagttagt tgttgtcttg cccacagttt ttaacttttg      5280
     tacatctttt tattttttgc cattttttaa atgtttattg catgttgtgt gggcctcttt      5340
     gttatcgagt gtgaatgccg cgaaaccatt attgtatttt agtcgagtat gaatgccgcg      5400
     aaaaaatttt tgaatttatt tttattatta ttaatttttt ttcgccgcgt gctcgccccc      5460
     gggtcttttt taattcttat gactmttwct gcttgcgttt ggcccggggg tgagagcaat      5520
     aktcwttgat gtaaattgcc ccggccaatc agccgggcaa tagtactatc aaaatgtacc      5580
     tgataggggg gaagtttttt cctccccccg cgcgcgttgt tgctcggccc attggcggga      5640
     gggggggggc gattgtcccc cgcccataaa atatttaaga ttttgcgcgc ggcttagttg      5700
     ccgtgactct tgtacctgca ccccgggggg tctgtccccg gggaacatta attgaaataa      5760
     aa                                                                     5762
//
ID   Utopia-1_DPo repbase;    DNA;    INV; 3866 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_DPo.
XX
OS   Dendroctonus ponderosae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Curculionidae; Scolytinae; Dendroctonus.
XX
RN   [1]
RP   1-3866
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   The 3' end is followed by a U2 snRNA gene. The 5' end is
CC   uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           294..3746
FT                 /product="Utopia-1_DPo_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MEETLTSYPLDVPIADEVHCRICAPVPKFYKRHGDLS
FT                 KHLRRYHLSRLVFRCRHCNEIFQTLKGCKAHQINCSATPSLDSPPPPPLPP
FT                 TTKGAIQVKRSRMPKNTKVATPIAPPTTASTSATPPPTRHPPSMTGLHRNR
FT                 DLDTAGTPQATCLPVRQRKATRRRITPNRTPPPQTAPTTSEKETPGPPQKP
FT                 QTPVPTPDEPPGPLPIHQTNLAPTTQNDSPPEAQPTTKQRLWIEKFKHVKD
FT                 TTEFEDNFEELMKEVKPSERPQHSQHPRRQGTAQQNNPNQPKGNNYNAQDA
FT                 SRIQKLYRKNRQRAFREVIDDDSPFCRIPSNDLHAHFTRVFSLGTQSTPTM
FT                 PTQAQLPPVLNISDRDPLEAEFTPAEVWKRIIRCSNTAPGPDGVRYSNWRK
FT                 FDVGAQIIAAVLNCAKRLKYTPKAWTTSLTILIHKKGSREDVTNWRPISLS
FT                 NTIAKIHTSVLAERLGAWATRNSRLGESQKGFLQMDGCAEHNFVLQSIIAD
FT                 ARRNRRQCCVAWLDLANAFGSIPHETIFQSLGWSGLSDNSIDVIRLLYENN
FT                 TTSIRSSTGPTPAIHIKSGVKQGCPLSPIIFNLAIEPILHAITACGGGYRL
FT                 MGKKINSLAYADDMAIIAENPSDLQRLLDTTTEMANWAGLSFNTKKCATLH
FT                 IDGRRKQAITTAFNIQGGEPAILGEHELYEHLGVPTGYHTANSADEVLQAM
FT                 SRNLEKVDHSLLAPWQKCDAINTFVLPCLSFHLKNGVVPKTELSKLDRELK
FT                 IAAKKWLNLPQRASVEPLYMSYKMGGVNLMPMNQMADISQITHAARLLDSA
FT                 TVGSLAKLLLQQSVTQRLRRDGTNSELAEYLNGSMAGDFKNESIDVTNTFT
FT                 RLRTATTRLRRKHPNVEWISVDGKLKVSINKCTVNTRDVEASLKNLMRESY
FT                 RQQLLAKPDQGKVYQVTPAATAPNHFMRSGDFTRFAEWRFVHRARLDCVPL
FT                 KGARRHGNGDKRCRRCGHANETLPHVLNHCKPHFAAMTRRHDAVLNRITKA
FT                 FKPPGDTVVKVNRTVPGFDDGLRPDLLITNINEKTMTLVDVAIAFENRYTA
FT                 FEATRAEKLRKYKHIADDFIARGYDVHMDAFIIGSLGGWDPANERTLSRLG
FT                 LGRRYCHLMRRLMCTDTIRWSRDIYVEHVTGNRQYQEANRGDQ"
XX
SQ   Sequence 3866 BP; 1153 A; 1171 C; 903 G; 639 T; 0 other;
     ccaaaccgct tgcagccggg tcacaaactc ccagggtacc aacagatgcc agtcgcagaa        60
     aaataaggct ctacctagcg acgctgaaaa gctactgcgg ctgacaaagc aggtcttcca       120
     gcgcaggaac gaggtatttt gcatggacga cgtatatgga gacctcgtct cttcctacgg       180
     cagaaatgca ttcgaccccc gaaaatcatg gccgaaggcc actacacgac cccctcccct       240
     agtatgcctt aaacacgctg cgtgatcaaa tcttccggac caacaagaag agaatggagg       300
     aaacactcac cagctacccc ctggacgtcc caatagcaga cgaagtccac tgccgcatct       360
     gtgccccagt gccaaagttc tacaaaagac acggggacct cagcaaacac ttgagacgct       420
     accatctgtc ccgtctggta ttccggtgtc ggcactgcaa tgagatcttc caaacactaa       480
     aagggtgcaa ggcacaccag attaactgca gtgccacgcc cagcctggac tcgccaccac       540
     caccaccgtt gccaccaaca accaaaggag ccatccaggt taagcgaagc cggatgccca       600
     aaaatacaaa ggtagctaca ccaatagctc cacccaccac tgcctcaaca tcggcaactc       660
     caccaccaac ccgccatcct ccatcaatga ctggcctaca caggaaccgc gatctggaca       720
     cggctggcac accacaagcg acctgcttgc cggtgaggca acgtaaagcc accagaaggc       780
     ggataactcc aaatagaaca ccaccacccc aaactgcgcc aacaacatcg gagaaagaaa       840
     cacctggacc accacaaaag ccccaaacac cagtccccac acctgatgag ccaccaggac       900
     cactgccaat ccaccaaaca aatctggcac caaccacaca gaacgacagc cccccggaag       960
     cacaaccaac caccaaacaa cgcttatgga ttgaaaaatt caaacatgtg aaagacacca      1020
     ccgagtttga agacaatttt gaggagctca tgaaagaggt aaaaccaagc gagcgtcctc      1080
     aacattctca acatccaaga aggcagggca cggcacaaca gaacaaccct aaccaaccaa      1140
     aagggaacaa ctacaacgcc caagatgcct caagaatcca gaagctctat cgcaaaaacc      1200
     gccaacgtgc tttccgggag gttattgatg atgactcacc gttctgccgc atcccgagca      1260
     acgacctgca cgctcacttc acgcgggtat ttagcctcgg aacgcagtcg acaccaacaa      1320
     tgccgacgca agcacaactg ccgccggtac tcaacataag cgaccgtgac ccactcgaag      1380
     cagagttcac gcctgctgag gtgtggaaac gaataatccg ctgcagcaac actgcgcccg      1440
     ggcccgacgg cgtgcgatac tccaactgga ggaagtttga tgtgggagcc cagataatcg      1500
     cagcagtcct gaactgtgcc aagcgcctaa agtacacccc aaaggcatgg acaacctcac      1560
     tcaccatcct aatccacaag aagggtagtc gtgaggatgt aacaaactgg cgacccattt      1620
     cgctatcgaa cacaatagcc aaaatccata cgtcggtact ggctgaaagg ctgggcgctt      1680
     gggcaacaag aaatagcaga ctaggagaaa gccagaaggg gttcctgcag atggatggat      1740
     gcgcggagca caacttcgtc ctgcaatcca taatcgctga cgcaagaagg aaccgaagac      1800
     agtgctgcgt ggcttggctt gatcttgcta acgccttcgg atcaataccc cacgagacga      1860
     tcttccagtc actgggatgg tccggcctga gcgacaactc gatagacgtt atccgactac      1920
     tatacgagaa caacacaacg tcgatcagga gcagcactgg tccaacaccc gccatccaca      1980
     tcaaatctgg agtaaagcag ggatgcccac tatcaccaat catcttcaac ctggcaattg      2040
     agccaattct tcatgccatc acagcctgtg ggggcggata ccgtttgatg ggcaagaaaa      2100
     tcaattcgct ggcatacgct gacgacatgg ccataatcgc tgagaatcca tctgatctcc      2160
     agcgacttct ggacacaacc acagaaatgg ccaactgggc agggttatca ttcaacacaa      2220
     agaaatgcgc aaccctccac atcgacggcc ggcgcaagca agccattaca accgctttta      2280
     acatccaagg cggcgaacca gcgatcttag gcgaacacga actctacgaa caccttggag      2340
     ttcctacggg ctaccacaca gccaactccg cagatgaagt gctccaggca atgagtcgaa      2400
     acttagagaa agttgaccac tctctactag cgccatggca gaaatgcgac gccattaaca      2460
     ccttcgtgct cccatgcctg tcattccatc tgaagaacgg agtggtgccc aaaacagaac      2520
     tctccaagct cgacagagag ctgaagatcg ctgctaagaa atggctaaac ctgccccaac      2580
     gagcaagcgt cgaacccctc tacatgagct ataaaatggg aggggtcaat cttatgccaa      2640
     tgaaccagat ggccgacatc agccaaataa cacacgcagc aagattgcta gactctgcaa      2700
     cagtgggaag cctggccaaa ctactgctgc agcagtcggt tactcaacgc ctgcgtagag      2760
     atggcaccaa cagtgagctg gccgaatacc taaacggctc catggctggg gacttcaaaa      2820
     atgagtccat cgacgtcacg aacacattca ctcgactcag gactgccaca acgcggctcc      2880
     gcagaaaaca cccaaatgtc gagtggatct cggtggacgg caaactgaag gtgagcatca      2940
     acaaatgcac ggtaaatacc agggacgtgg aagcttccct taaaaacctg atgagggaaa      3000
     gctaccgaca gcagctcctt gccaaacccg accagggcaa agtgtaccag gtgacgccag      3060
     ccgcaactgc accaaaccac tttatgcgca gcggcgactt caccaggttc gccgaatggc      3120
     gctttgtcca cagagcaagg ctggactgcg tcccactcaa aggagctcgg aggcacggga      3180
     atggcgacaa gagatgccgg aggtgcggac atgccaacga aacattaccg catgtcctga      3240
     accactgcaa accgcatttc gccgccatga ccagacgaca cgacgctgtg ctcaacagga      3300
     taaccaaggc gtttaaacca cctggcgaca cagtggtcaa ggtcaaccgc acggtgcccg      3360
     gcttcgacga cggtctacga cccgacctac tgatcacgaa catcaacgag aaaacgatga      3420
     ctctggtgga cgtcgcaatc gcattcgaaa accggtacac ggctttcgag gcgaccaggg      3480
     ctgagaagtt gcggaaatac aaacacatcg ccgacgactt tattgcccgg ggttacgacg      3540
     tccacatgga cgctttcatc atcggctccc ttggaggctg ggaccccgcc aacgagagga      3600
     cgctgagccg cctggggctg ggaagacgct actgccacct gatgcgacga ctcatgtgca      3660
     cggacaccat ccgctggagt cgggacatct acgtggagca cgtgacgggc aaccgacagt      3720
     accaggaggc aaaccgaggc gatcaataag ctgtgaacta ccaaaaacca acacgcaaga      3780
     gtcgggcact agctgccaaa aactcttata caccactgtt gtaatactct tttcttttct      3840
     ttgtcaagca ttcgctgaat aaacta                                           3866
//
ID   Utopia-1_DYak repbase;    DNA;    INV; 3851 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_DYak.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RG   Drosophila 12 Genomes Consortium;
RT   "Evolution of genes and genomes on the Drosophila phylogeny.";
RL   Nature 450(7167), 203-218 (2007).
XX
RN   [2]
RP   1-3851
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [2] (Consensus)
XX
CC   A few copies are present in the Drosophila yakuba genome. Most
CC   of them are associated with U2 snRNA genes and SAR2_DM satellite
CC   sequences.
XX
FH   Key           Location/Qualifiers
FT   CDS           381..3623
FT                 /product="Utopia-1_DYak_1p"
FT                 /note="RT and restriction enzyme-like nuclease
FT                 domains."
FT                 /translation="YAPGYEAAQSPCGREPPRDHHRRPRDACGSSHSPEPC
FT                 LTTPRLLPETVSAEPCDDESQRTRYASPHKQARTLHDAEPRDASREHAPSC
FT                 AEPRCHRCQWTHWKDCCPHSTNTTDGPEGTDRCADTITSPATAACPQRSPC
FT                 PLGSSNGCDETAPEKRQPAADLVHTAPFAVLVRAGPFADLVRAGPFADHHQ
FT                 DDDPLPHRSGSLGPLCSKQKDPRKTHQHRHSGQAGNQTHTDIPRAAPSRRA
FT                 AICLMANAAATREDLLRAATSLSEMAAANQPTRSPTGGGEPTSQGRRGPQA
FT                 LADAAKRIQQIYRTNIPRAMRKVLRTLLTAVFSACLRTGHVPDLCKKSRTV
FT                 LIHKKGDRTDLSNWRPLSMGDTIPKLFAAVMADRLTAFLTNGGRLSEEQKG
FT                 FLQHEGCHEHNFVLGQVLEESRRQGKDLVMGWLDLSNAFGSIPHATIMDAV
FT                 AGMGIPSRIRTIIHQLATGAATTAKTIDGMSEEIPIEAGVRQGCPASPILF
FT                 NIAIERVLRKIKTVNAGYLLYGSRISPLAYADDLVLIASSPEEMRSLLRAA
FT                 DDAAIEAGLHFNPKKCATLHLTGKKSSRRAVQTGFLVRGTPIPAMTEGDAY
FT                 EYLGIPLGLKKNQTPRAAMEAIVGDIAKIDDSLLAPWQKIDAARTFVAPKL
FT                 DFVLRSGATLRAPLRHLDTVIKKHIKKWLYLPQRASAEVVYTPLKKGGAGI
FT                 LPSSILADVLTIAQAHRMVSCPGEVVSRIASEGLREAVKRKINREPSGDEM
FT                 AHFLSGSTLSGETASFGDAGFWSRVRMATKRQAVHLGVRWAWRGGELLVES
FT                 RGQRNRPVATDSNSRSQLIQRLRCAAQDEFLTILINKPDQGKVAKLSTLTP
FT                 VSNAFIRDGSFTRFADWRFIHRARLGVLPLNGAIRWGSGDKRCRVCGYQLE
FT                 SVPHVLCHCMHHSNAMQQRHNAVMDRLAKAGSRLGTPRVNCRVEGVAEDMA
FT                 ALRPDLVWRDERSRKIVIVDVTVPFENGAEAFDNARGEKEEKYRPLAEALR
FT                 AMGYQVKLEAFIVGALGSWDPKNERVLKTLGVSRFYAGLMRRLMVADTIRW
FT                 SRDIYVEHVSGIRQFTLPSGAPSN"
XX
SQ   Sequence 3851 BP; 966 A; 1136 C; 1048 G; 699 T; 2 other;
     aaagtgtagt tcttttctgt tttagtgtag tgggaagtct gtttcttttt attatgtttt        60
     ttacgaaaaa gtcctggtct ttgaaattca ttgtctaaat tttaaataaa attataaaat       120
     ttaaaaagaa aattaattaa agaagcgatg aaatatctct gaaattcaat caatcaatta       180
     atcatggcgt ctcagcgagt gcacgtattt gcctacccct tcgtgggacc attccggtgc       240
     tccgtatgca tggatgcgtc cgggatgcat cccactaggt cgctgggcga atacggcaca       300
     tacgctgcgg catatcagca cataacccgg cgccacccac aagtggttat tacataccgt       360
     tgccgggtct gtggcgctga tatgccccgg ggtatgaagc agctcaaagc ccatgtggcc       420
     gcgagccacc ccgagaccac cacagacgcc cacgggatgc ttgtggaagc agccacagcc       480
     ccgaaccctg ccttaccact ccccgccttc tccccgagac agtcagcgct gagccctgtg       540
     acgacgagag ccagcgaacg cggtacgcct ctccccacaa gcaggcgcgt actctgcacg       600
     acgccgagcc gcgcgatgct tcccgggaac atgccccatc ctgcgctgag ccccgttgtc       660
     acaggtgcca gtggacgcac tggaaggact gttgccccca ttccaccaac acgacagatg       720
     gccccgaggg caccgaccgc tgcgcagaca ccatcaccag ccccgcaacg gccgcctgcc       780
     cgcaacgttc cccctgcccc cttgggtcaa gtaacgggtg tgacgagacg gctcctgaga       840
     agcggcaacc agccgccgat ctcgtccata ccgccccgtt cgccgtcctc gtccgtgccg       900
     gcccgttcgc cgatctcgtc cgcgccggcc cgttcgccga ccaccaccag gacgacgacc       960
     ccctcccgca ccggtctggg agtctcggcc ccctctgctc caagcagaag gacccccgaa      1020
     agacccacca gcaccgccac agcgggcagg ccgggaacca aacccacacg gacataccca      1080
     gagccgcccc cagcagaagg gccgcaatct gcctgatggc caatgccgcg gccaccaggg      1140
     aggacctgct gagggccgcc accagccttt ccgaaatggc ggccgcgaac cagcctaccc      1200
     gctcgcccac tggaggtggc gagcccacct cacagggtag gcgcggaccg caagcactgg      1260
     cagacgcagc gaaaaggatc caacaaatat acaggaccaa catacctcgc gccatgagaa      1320
     aagtcctgag aacactgctc acggcagtgt ttagcgcctg cctgaggaca ggtcatgtcc      1380
     ccgatctgtg taaaaagtcc agaacggtct taatccacaa gaaaggsgac agaactgacc      1440
     tgtcaaattg gaggcctctt tccatgggtg acaccatccc caaattgttc gcagccgtca      1500
     tggcggacag gctgacggcg ttcctcacta acggaggaag gctcagcgag gagcagaagg      1560
     gcttcctcca gcacgaaggc tgccatgaac acaattttgt tcttggccaa gtgctggagg      1620
     agagcagacg ccaaggcaag gacctcgtca tgggctggct ggacctgtcc aacgcgttcg      1680
     ggtcgattcc gcatgccacc atcatggacg cggtcgccgg tatggggatc ccttcgagga      1740
     tccggaccat aatccaccag ctggccaccg gcgccgcgac caccgccaaa accattgatg      1800
     gcatgtcgga agagatcccg atcgaagcgg gggtcagaca gggctgccca gccagcccaa      1860
     tcctctttaa catcgcaata gagcgggtac ttcgcaaaat caaaaccgtc aacgcggggt      1920
     acctgctcta tgggagccgc attagcccgc tggcgtacgc cgatgacctg gtgctaattg      1980
     cgagctcccc agaggagatg aggtccttgc tgcgtgctgc ggacgacgcc gcaatagaag      2040
     ccggtctgca cttcaacccc aagaagtgcg cgaccctaca cctcacgggg aagaaatcct      2100
     cgcggagggc agtgcagacc ggcttcctcg tccgtggcac gccaataccg gccatgacag      2160
     agggggatgc ctacgaatac ctcggcatcc ccctgggttt aaaaaaaaac caaacaccca      2220
     gggcagcgat ggaagcgata gttggggaca tagccaagat agatgactcg ctgctcgccc      2280
     cgtggcaaaa gatcgacgcg gcccgcacct tcgtggcacc gaagcttgac ttcgtgctac      2340
     gaagtggcgc caccttgcgg gccccgctgc gtcatctgga tacagtcatt aaaaaacaca      2400
     ttaaaaaatg gctgtatctg ccgcagaggg cgagcgcgga ggtagtatac accccgctga      2460
     agaaaggtgg agcgggcata ctaccttcat ctatattggc tgatgtccta actatcgccc      2520
     aggctcaccg catggtgtcc tgccctgggg aggtcgtctc ccggattgca agtgagggcc      2580
     tgagagaagc ggtaaagcga aaaataaacc gggagccatc cggcgacgag atggcccact      2640
     ttctctcagg ctccactcta tccggggaga cagccagctt tggcgacgcc ggattctggt      2700
     cgagggtgag gatggccacc aaaaggcaag ctgtgcatct gggggtgcgt tgggcctgga      2760
     gaggaggtga gctactggtc gagagtagag gacaaagaaa ccgaccagtg gccaccgact      2820
     cgaactccag gtcccaactc atccaacgtc tcaggtgcgc agctcaggat gagttcctga      2880
     ccatcctcat aaataaaccc gaccagggga aggtggcgaa gctctccacg ctaaccccag      2940
     tcagcaacgc gttcatacgc gacggtagct ttaccaggtt tgctgactgg cggtttatcc      3000
     acagagcccg actgggagtc ctcccactca acggagcgat ccgatggggc agcggcgaca      3060
     agcgctgccg ggtctgtgga tatcagctgg agagcgttcc acacgtgttg tgccactgca      3120
     tgcaccactc aaacgcaatg cagcagaggc acaacgcggt gatggatcgc ctcgccaagg      3180
     ctggctcacg gctggggacc cccagggtga actgccgcgt ggaaggggtc gccgaggaca      3240
     tggcggccct caggccggac ctggtatggc gcgacgaacg gagcagaaaa atcgtcatag      3300
     ttgacgtgac tgttccgttc gagaacgggg ctgaagcgtt tgataacgcg aggggcgaga      3360
     aagaagaaaa ataccgcccc ctagctgaag ccctgcgcgc catgggatac caggtaaaac      3420
     tggaggcatt cattgtcgga gccttgggct cgtgggaccc taaaaacgaa agggtcctta      3480
     agactttggg tgtctccagg ttttatgctg gcctgatgcg cagactgatg gtggccgaca      3540
     ccatcaggtg gtcccgggac atttatgtgg agcatgtatc cgggatcagg cagttcaccc      3600
     tgccaagtgg agctccctcc aactaaaaaa ttaaaatgcc ttaaaaataa ataaatatat      3660
     caaaatttaa aaaaaaaaac gaggaacaaa taaacacaaa ttctgaaaga tttatataat      3720
     ttaaaawata aatcgaaaat aaatgttgaa aacaaaaaaa aaataataat aataataaaa      3780
     acacaataac actcacccgg cctgccccag aggcaggtaa acatttactg gccatatggc      3840
     ttttttttta a                                                           3851
//
ID   Utopia-1_GG1 repbase;    DNA;    INV; 3062 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_GG1.
XX
OS   Ganaspis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Cynipoidea; Figitidae; Eucoilinae.
XX
RN   [1]
RP   1-3062
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   It is a transcribed sequence. It is followed by
CC   TCTGTTCTTATCAGCTTGATAT. The 5' end is uncertain.
CC   GAIW01019287.3084-23.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2763
FT                 /product="Utopia-1_GG1_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="ERARIGSKSKTIANLNELEEISQLFVNFASRFQPLVS
FT                 ERKGANKNNGPRKCTLSRKEMATKIQKLYRKNKKHAVQQIIEGNKEDCKID
FT                 ISNIQTYFENIYKAPQLDVQGLPRDVKFDPVDEASSDNLSINISPFEVVNK
FT                 LKFMKNTAPGPDGISYPTLLKADPSGAILANIYSASINLNAIPKSWKNSTT
FT                 ILVLKKGDVSRIKNWRPITMTNTIYKIFAALLSDRIALWAKKNNRLSWAQK
FT                 GFLQYEGCYEHNFVLQEALQLARSKGRSLAVAWLDLANAFPSVPHGTIDHA
FT                 LRLSGLPDNTRDLIMQSITGCNTVIKTKSGQTAAMQMNAGVKQGCPLSPLI
FT                 FNLVFELVLRRIDDMGGGFHMFGKKIRALAYADDVVLLAPGVEDMQALLNG
FT                 VERLCSSIGLRININKCATLTMVGGKVCNSALRLEDGVIKALDINEAYEHL
FT                 GVPTGARFLYHPIDSLTRAEEDVEKINSSLLAPWQKIEATAVFILSRLDFI
FT                 LRGARINKTNLKSLDKLIKKRAKEWMFLPKRASAEIVHIHPSKGGAGLLPV
FT                 GDLLDIYAIAHAFKLLSSKDPVIREMALASARDSVRVKIKRHPTMNEIAKY
FT                 LSGDCSDVLSLPSGSKASLWSYVRKATSRQNDRLGVRWSWCEEREELSLEC
FT                 KGWRGNKVIIPPGARSKIIFQLRSATYNFYMNSLLKKKDQGKVFHQSSINK
FT                 SSNHFLRNGGFTRFADWRFVHRARTNVLPLNGALKGRVDRDRRCRVCGHDL
FT                 ETLPHVINHCNKNMQAITRRHDAVIKRLVKAHKIPGEVAIDQTVEGVDAGS
FT                 SLLRPDIVIRDERAREITIIDVAVPFENGPEALKIAGDHKLKKYDRLAKSL
FT                 EDKGYSVFLFAFVVGALGSWDRKNEQVFEHLLIGRKYAGLMRKLVVSETIK
FT                 WSRDIYVEHVSGIRQFK"
XX
SQ   Sequence 3062 BP; 955 A; 599 C; 710 G; 798 T; 0 other;
     gaaagggcgc gcatcggctc gaaatcaaaa acaattgcta accttaatga attggaggaa        60
     atttcccaat tatttgtaaa tttcgcgagt cgatttcagc ctcttgtcag tgaaagaaag       120
     ggtgcgaata aaaataacgg cccaagaaag tgcacccttt cacgaaaaga gatggccact       180
     aaaatacaaa aactgtacag aaaaaataaa aaacatgctg tacagcaaat tatagaaggc       240
     aataaagagg attgtaaaat tgacatctct aacatccaga catactttga aaatatttat       300
     aaagcccctc agctggatgt acaaggtctc cctagagatg tcaagttcga tccagtggat       360
     gaagctagta gtgacaacct cagtattaat atctcccctt ttgaggttgt caataaatta       420
     aaatttatga aaaatacagc tccgggcccg gacggaatat cctacccgac actactgaaa       480
     gcagatccgt ctggagcaat actagccaac atctacagtg cctctattaa tttaaatgca       540
     atccctaaat cctggaaaaa ctcaacaaca attttggtct taaaaaaagg tgatgtatcc       600
     aggattaaga attggagacc aattacgatg acgaacacga tatataaaat cttcgcagct       660
     ttgttgtcgg ataggattgc attgtgggct aaaaaaaata acagattgtc ctgggcgcag       720
     aagggcttcc tccagtacga gggatgctac gagcataact tcgtgctgca ggaggccctt       780
     cagcttgcca ggagcaaggg gagaagtctt gcggttgcat ggttggactt ggcgaatgcc       840
     tttccatccg tgccgcacgg gacgatcgac catgctctaa gactttctgg attacctgac       900
     aatacccggg atcttataat gcagtcaatt actggctgta atacggtaat aaagaccaaa       960
     tcgggacaaa ccgcggcaat gcaaatgaac gccggagtca agcagggatg cccgttgagc      1020
     cctctcatct ttaaccttgt atttgaatta gtattaagaa ggatagatga catgggtggg      1080
     ggcttccaca tgtttggaaa gaaaattagg gctctagcat acgcggatga cgtcgtcctt      1140
     cttgctccgg gcgtagagga catgcaggcc ttgctgaatg gagttgaaag actctgttca      1200
     tcaattggac tgcgtattaa catcaataaa tgcgcaactc taaccatggt tggaggaaaa      1260
     gtgtgcaact ccgctctgag gttggaggac ggtgtcatca aggcactaga tataaatgaa      1320
     gcgtatgagc acctaggtgt tccaacaggg gctagatttc tctatcatcc aattgattcc      1380
     ctcacaagag cagaggaaga cgtggagaaa ataaatagct cactgttagc cccgtggcaa      1440
     aaaatagaag ccactgctgt gtttattctg tccaggctgg actttatttt acgaggggct      1500
     agaataaaca agacaaattt aaaaagcctg gacaaactta ttaaaaaaag ggccaaagaa      1560
     tggatgttcc tcccaaaaag agcaagcgca gagattgtgc atatacaccc ctcaaaagga      1620
     ggggcaggtc tcctcccggt gggagatctg cttgacatat atgcaattgc gcatgctttt      1680
     aaattgctga gctcgaagga cccagtaatt agggagatgg cacttgcttc ggcaagagac      1740
     tcagtaagag ttaaaatcaa aagacatccg acaatgaatg aaattgctaa gtacttgtcg      1800
     ggtgattgtt cggatgtctt atctttgcca tctggctcaa aagcctcctt atggtcttat      1860
     gttcgaaagg caacgagcag gcaaaacgat agattggggg ttcgttggtc ctggtgcgaa      1920
     gaacgtgagg aactgtccct ggagtgtaag ggttggaggg ggaataaagt catcattccc      1980
     ccaggggcgc gatcaaaaat cattttccaa ctccgtagcg ccacatataa tttttatatg      2040
     aactccctgt tgaaaaaaaa agatcagggt aaggtcttcc accagagcag tataaataaa      2100
     tcctcaaacc actttcttag aaatgggggt tttaccagat ttgccgattg gcggtttgtc      2160
     cacagagcca ggacaaacgt attgccactt aatggggctc ttaagggaag ggttgatcgt      2220
     gatcggagat gtagagtctg cggccacgac cttgaaaccc tcccacacgt tattaatcac      2280
     tgcaataaaa atatgcaggc aattactaga cgccatgatg cagtgattaa aagattggta      2340
     aaggcccata agatcccggg agaggttgca atcgaccaaa ccgtggaagg agtcgatgcg      2400
     ggctcttctt tattacgccc ggacattgtc attcgggacg agcgagcacg cgaaattaca      2460
     ataatagatg tcgccgtccc gtttgagaat ggtccggaag cacttaaaat cgccggggat      2520
     cacaagctta agaaatatga ccgattggct aagtcccttg aggacaaagg ctactcagtg      2580
     ttccttttcg catttgtggt gggagcgctg ggtagctggg accgaaaaaa cgagcaagtc      2640
     tttgagcatc tgctgatcgg tagaaagtat gcaggactta tgaggaagct tgtggtctct      2700
     gagacgataa aatggtcaag agacatttat gtggaacatg tttctggcat aaggcaattc      2760
     aaataaaaca atgatatgaa ttaagcttgt cttatgcctt ttccactata tgtatatttt      2820
     attttacgac tggtttttat atccttaata tatctatttt ttttattgtt taatgactta      2880
     taaccaaatg gtaattaatg agcgctggag gtgaaaataa tatgtgttga aaaaagacac      2940
     acacatatat ttttttttat attttataaa taacaatatt atatggaact atgtatatta      3000
     cccagcaggg agcttgtccc ctgactggga acattttctt ttttttgaaa ataaacgtct      3060
     ta                                                                     3062
//
ID   Utopia-1_HMM repbase;    DNA;    INV; 3882 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_HMM.
XX
OS   Heliconius melpomene melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius; Heliconius melpomene.
XX
RN   [1]
RP   1-3882
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Its 5' end is flanked by U2 snRNA gene. The 3' end is
CC   uncertain.
XX
FH   Key           Location/Qualifiers
FT   CDS           61..3429
FT                 /product="Utopia-1_HMM_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MGDPVILCEDSYIVVRSPVPENTEISCPLCMGRRGHY
FT                 AGARRVENFIRHCKEHHQGRTVKYRCTGCGYEPPDQSKYPRKLVNHHATTC
FT                 EGLAATVLPPPSGVADQQRRQNIRRNLRTRPEASLTVEVEPAPAVDEPTPP
FT                 LAAAPASPASHSSQPEQTPNSGVSSHHSLRAAAVVSRAASPCSRDEPLVAR
FT                 GPTAEQQRLIDTIEAAANQHQLDDASQAVVRFLQKRVERAAARHRPQRQAR
FT                 RTEQPSNRVQEATRLQALYRSNRKRALQSVLEDSTATCRIGKQEVLQHFSA
FT                 LARKRDGELDWPNVFDLPAPAEDSNDILMSPFSAKEVSAKLRSRSDTAPGP
FT                 DGVRYSQIRRTDRGAYVITALYNAVWRLQMIPDPWKDSTTSLIFKKGDVNN
FT                 IDNWRPIAVGDTCPKLFAALLADRLKTWARVNGRFSPSQKGFLDYEGCFEH
FT                 NFVLQQAIHRAKEEKRELVVVWLDFSAAFSSLPHSSITRALREHQVPRSVC
FT                 DVIERLYIGSRTNIRTIDGLTDIVNMEAGVKQGCPLSPDIFNLTLEVVLRH
FT                 ATSSGVGFKLDDEMLLSVLAYADDLVLLANSEEGMKRHLEATREAAWAIGL
FT                 SFNPDKCASLHIGPDGVRNIRYSVQDAQIAALGPDDIYSHLGIPTGYQVHQ
FT                 TPCSTLAGMITDLRKIDESLLAPWQKLDAAGTFILPRLDLAMQGAEISREH
FT                 LAEADRVVRKLAKGWMALPQRASPELAFLSPSNGEGGLLPLSDLYEAYTQA
FT                 HAFRMLHAKDPLVSGLAAKSLRDTVSARLRKTPSNIDMARYLSGDLDIPRS
FT                 SAKTSFWARVRNAAGRMNKRIGCRWIWSQQQQELQLHLRDGTTIGARERSE
FT                 AYRRLRGEFMATYTHSLLRKPDQGKVFAVTSQTASSNHFLRTGRNTRFCDW
FT                 RFIHRARLDVLPLNSTKRWLVGNDKRCRKCGHAQETLPHVLNHCGVHAAAS
FT                 QKRHHNIVHRLVKAANGPSGHRRDGAVITSDRVVEGTRGRESTLRPDIVLR
FT                 NAATKEITIVDVCVPFENRPAAIEAARSEKLRKYAALADQLRQDGYRVKVA
FT                 AFVVGALGAWDGRNEKTLDLLGINKYYAGMMRRFMVSDTIRWSRDIYVEHV
FT                 SGIRQYAEAEVPPRQ"
XX
SQ   Sequence 3882 BP; 980 A; 1052 C; 1019 G; 831 T; 0 other;
     aaagtgtaaa gtgacaaatg tgaagatcaa gtgaaagtga agtgtttaca gcctagtatc        60
     atgggcgatc ccgtcatcct ttgcgaggat tcttacatcg tcgttcgttc ccctgtcccc       120
     gagaacaccg agatctcctg cccgctgtgc atgggaagaa gaggacacta cgcgggtgct       180
     agacgtgttg agaacttcat cagacattgc aaggaacatc atcaagggag gacggtcaag       240
     tacagatgta caggatgtgg atacgagcct ccggaccaat ccaagtaccc aaggaagctg       300
     gtcaaccatc acgccaccac ctgtgaaggt ctggcagcca ccgtactacc accaccgtca       360
     ggggttgccg atcaacaacg acgccaaaac atccggcgta acctgaggac cagacctgag       420
     gcctcactaa cagtggaagt ggaacctgct cctgcagtgg acgagcctac gcctcctttg       480
     gctgctgcgc cggcatcgcc ggcctctcac agtagtcagc ccgagcaaac accgaattcg       540
     ggggtaagca gtcatcattc actacgggcc gcagctgtgg tctcccgggc ggcttcgcct       600
     tgttctcgcg acgaaccact ggtcgcccgc ggacccacag ccgagcagca gcgcctcatc       660
     gacaccatcg aggccgctgc caatcaacac cagcttgacg atgcatcgca ggcggtcgtt       720
     cgcttcctcc agaagcgtgt tgaacgtgcc gccgcccggc acaggccgca gagacaagcc       780
     cgtcgaactg aacaaccgag caaccgagtg caggaggcaa ctcgtctgca ggccctatat       840
     aggagtaacc gtaaacgggc cttacagtca gtattggagg attcgacggc aacttgcagg       900
     atcggcaaac aggaggtgct tcagcacttc tctgcattgg cgcggaagag ggatggtgag       960
     cttgactggc cgaatgtttt cgacctaccg gccccggcgg aggacagcaa cgacatcctg      1020
     atgagcccat tctcggctaa agaagtctcc gcaaagctga ggtcccggtc ggacactgca      1080
     ccaggcccgg atggagtccg ctacagccaa atcagaagaa ccgaccgcgg ggcctatgtc      1140
     atcacggctc tttataatgc ggtctggagg ctgcagatga tcccggaccc ttggaaagac      1200
     tccacgacat ccctcatatt taaaaaaggg gatgtcaaca acatcgacaa ctggaggccc      1260
     atcgccgttg gtgacacctg cccaaagctg ttcgcggctt tactcgcgga cagactgaag      1320
     acctgggctc gagtcaacgg ccgattcagt ccatcgcaga agggcttcct ggactatgaa      1380
     ggctgtttcg agcataactt tgtcctgcaa caggccatac atcgagccaa agaggagaag      1440
     agagagctgg tggtggtgtg gttggatttc tccgctgcct tttcttcgct gccgcactcc      1500
     tccatcacac gcgccctgcg agagcaccaa gtgcctcgta gtgtgtgcga cgtcatcgag      1560
     cgcctctata taggatccag aacgaatata cgcacgatcg acggactcac tgacatcgtt      1620
     aacatggagg ctggcgttaa acaaggctgt ccactaagcc cggacatctt caatctcacc      1680
     ctggaagttg tcctgcgcca cgcaacatct agtggcgtgg gtttcaagtt ggacgatgag      1740
     atgcttttga gcgtcctggc atacgccgac gatctggtgc tgttggcgaa ctcggaggag      1800
     ggcatgaagc gacacttgga ggccacccgg gaggccgctt gggcgattgg cctctccttc      1860
     aacccggata agtgtgcttc cttacacatt gggccggacg gagtgcggaa catcagatac      1920
     tctgtccagg acgcacagat cgcagctctt ggaccggatg acatctattc ccaccttgga      1980
     atacctacgg gataccaggt ccatcagacg ccctgcagca cactcgcagg catgatcacc      2040
     gatctgagaa agattgatga gtcgctgctt gccccctggc agaagttaga cgcagctggc      2100
     accttcatct tgccaagact ggaccttgct atgcagggcg ccgagatcag ccgcgaacat      2160
     ctggcggagg cagatagggt tgtgaggaag ttggccaagg gatggatggc tcttcctcaa      2220
     cgagctagtc cggagcttgc ttttttatca ccatcgaacg gagagggagg cctgctgccc      2280
     ctcagcgact tatatgaggc ctatacacag gcgcacgcct tccggatgct gcacgcaaaa      2340
     gatcccttgg tgagcggtct ggcagcaaag tcgctgaggg acacggtgtc agctcgcctg      2400
     cgcaagactc ccagcaacat cgacatggct cgctacctct cgggtgactt ggacatcccc      2460
     cggagctctg cgaagacatc attttgggcc agggtaagaa atgcggctgg gcggatgaat      2520
     aaaaggatcg gctgccgctg gatctggagc caacaacaac aagagctcca gctacatctc      2580
     cgcgacggca cgaccatagg agctagggag aggagtgaag cttaccgtag gctgagagga      2640
     gagtttatgg ccacctacac ccattcactc ctgaggaagc cggaccaggg taaggtcttt      2700
     gccgtcacct ctcaaaccgc cagctccaac catttcctgc ggacgggccg gaacacccgc      2760
     ttctgtgact ggcggttcat ccacagagca cgcctggacg tcctcccgct caacagcaca      2820
     aagcgctggc tggtcggcaa cgacaaacgc tgccgtaagt gcggtcacgc acaagagacg      2880
     cttccgcatg tcctcaatca ctgcggtgtg catgctgcgg ccagccagaa acgccaccat      2940
     aacatcgtgc accggctggt caaggcagcc aacggaccaa gcggtcaccg cagggatgga      3000
     gccgtcatca cctccgacag agtggtggag ggcacgcgag gtcgtgagtc aaccttgcgc      3060
     ccggacattg ttctccgcaa cgccgctacc aaggaaatca ccatcgtcga cgtctgcgtg      3120
     ccgttcgaga accgtcccgc ggcgatagaa gccgcccgct ccgagaaact gcgtaaatat      3180
     gcagcactcg ccgaccagct ccggcaagac ggctaccgtg taaaagtggc tgcctttgtc      3240
     gtcggcgctc tcggagcctg ggacggccgc aatgaaaaaa ccctggacct cctaggcatt      3300
     aacaagtact acgccgggat gatgagaagg ttcatggtca gcgacaccat ccgctggtcg      3360
     cgtgacatct atgtcgagca cgtcagtggc atccggcaat acgcggaggc tgaagtccca      3420
     ccacgacagt gaactcagtg ctatcagtga atttagtatt tatccaccca tctctcagta      3480
     ttatttagtg atctcagtgc aatagttata ataataataa tagtgacatt agtgcaatag      3540
     taataataat aatgacatta gtgcaatagt tataataata gtgacattag tgcaatagac      3600
     gtcaaatgac tactttactt tatattatag tgttacagtt atattaagtc tctagtcagt      3660
     atatatacta tgtatataat tatattatct taagctgcta ttcattgtat agtttcacat      3720
     aaaatattaa ttataattaa aaatatgtat atatatatat atatatatat tattaacttt      3780
     atatgtttaa gtatatataa taattatata ttgtattatg taaaattaaa ctttatattt      3840
     gtgttgtatc tttagaatac agagttaata attataaata ta                         3882
//
ID   Utopia-1_HSal repbase;    DNA;    INV; 3722 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_HSal.
XX
OS   Harpegnathos saltator
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Ponerinae; Ponerini;
OC   Harpegnathos.
XX
RN   [1]
RP   1-3722
RA   Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N.,
RA   Donahue G., Yang P., Li Q., Li C., Zhang P. et al.;
RT   "Genomic comparison of the ants Camponotus floridanus and
RT   Harpegnathos saltator.";
RL   Science 329(5995), 1068-1071 (2010).
XX
RN   [2]
RP   1-3722
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [2] (Consensus)
XX
CC   ~93% identical to consensus. Target unknown. Likely
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           404..2806
FT                 /product="Utopia-1_HSal_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="LCAGPRRHHLQGPPCDPSVRLLAALFNACLRLEAVPA
FT                 VWKTSNTVLVYKKGDRGNLNNWCPLALGDTLPKLFAAVLADHITKWCVPSG
FT                 KLSPAQNGFLRDEGXFEHNFVLQEILTDARRSRREVVVAWLDLSNAFGSVP
FT                 HAAIRRALVRAGAPAGLIAVWGSLYDGCTTRVRTADGFTAPIQIRSGVRXG
FT                 CPLSPIVFDLAIDSVLRAVAAVGLGVELXXSRWSVMAYADDLVLVSRTPDE
FT                 MERLXAVAVNEASSVGLRFNPAKCATLHIGAGGAGRVRPTTLRIQGQPVRA
FT                 MAEGEAYEHLXIPTGFGVNQTPHAAIRALRDDLASVXRSLLAPWQRTEAVA
FT                 TFLLPRLDXLLRGAAVEKGPLKELDLQIRRSCKTWLNLPQRASAEMVYMPP
FT                 RKGGCGLLPLADLADVLXIAHVFRLLTADDRXVRDLAWASLRGVVARRVGH
FT                 PPGCDQIAAFLSGSLXGRLRGGGECSLWSRARNAARHRSDRCAIRWLWSEE
FT                 RRELVLQCRGPRGRITKIPPGARAQVIGRLRAAVAEWYETTLTRKPDQGKV
FT                 FEVSSRHRVSNHFMRGGSFTRSAYWRFIHRARLDVLPLNGARRWGDGDRRC
FT                 RRCGVESETLPHMVCHCGPHSAAIQWRHDSILLRLSRACRLPGRVTVNQRV
FT                 XGLEGELGELRPDLVXRHEPSKSVVICDVKVPFENRPVAFXEARXRKLAKY
FT                 APLAEALGRLGYRVVVTAFVVGALGSWDPCNEPVLRLLHIGSAYASMMSWL
FT                 IVSDTIRWSRDIYVEHVSGVRQYRASLRRADDGVPDVSPLRAIRRRVAGP"
XX
SQ   Sequence 3722 BP; 695 A; 1011 C; 1184 G; 812 T; 20 other;
     ggccgccgcc gcaccggttg cgtgaggtcg acgaggagcg gcgaaggggg agggagggac        60
     gagaggaagg ccgtcagtgg gaattggcac cggccaatat ccccgatttc ttcggagaag       120
     acagccggag caggactcgt gaagcagcgc gaatacaggc gctcttcagg aagaaccaac       180
     gcagagtggt tcgaaaagtg ctagccggta ccgtggagtt ctgcgacttg ccaaccgaag       240
     tggtacaggc gcacttcgaa gagctatatc gcggagggaa cgacttgcgg agagccgagc       300
     ctgcggagcg agccgacgtc tcgggcgggg acggcggtgc cgccgcgctg gtggagtcgt       360
     tcacggagcg agaggtgtgt catcggctcc ggcgtatgaa taactctgcg ccgggccccg       420
     acggcaccac ctacaaggac ctccgtgcga cccatcggtg cggctgctcg ccgccctctt       480
     caacgcatgt ttgcggctcg aggctgttcc tgccgtctgg aagacctcca acacagtgct       540
     ggtgtacaaa aaaggtgatc gcggtaattt gaacaattgg tgccctctcg cgttagggga       600
     caccctgccc aaactcttcg ccgccgtgtt ggccgatcat atcaccaagt ggtgcgtgcc       660
     cagcgggaag ctcagtccgg cgcagaacgg attcctaagg gacgaggggw gctttgagca       720
     caactttgtc ctgcaggaga tcctgactga tgctcggagg agccgcaggg aggtggtagt       780
     cgcgtggctg gacctttcca acgcgtttgg atcggttccc cacgcggcga tccgccgcgc       840
     actggttcgc gcgggcgcgc cggcgggcct catcgccgta tggggctcgc tgtacgacgg       900
     ttgcaccacg cgggtgcgaa ccgccgacgg cttcaccgcg cccatccaga ttcgctcggg       960
     sgtacgccmg gggtgcccgt tgagtccaat cgtgttcgac ctcgcgatcg actccgtgct      1020
     gcgtgcagtc gcggctgtcg gtctcggggt cgagctcwtg kactcgcggt ggtcagtaat      1080
     ggcctacgca gatgacctgg tactggtctc caggacgccc gacgagatgg aacgactgmt      1140
     cgcagtcgcg gtgaacgagg catcgtcggt cgggttgcgg ttcaaccctg ccaaatgcgc      1200
     caccctgcac atcggtgcag gcggagcggg cagggtccga ccgacgaccc tccggatcca      1260
     gggccaaccg gtccgcgcaa tggccgaggg cgaggcctat gagcacctck gcatwccgac      1320
     gggcttcggg gtcaaccaga ctccgcatgc cgccattagg gcgctccgtg atgacttggc      1380
     gtcggtcgam cgttccctcc tcgccccctg gcagaggact gaggccgtgg cgaccttttt      1440
     gttgccgcgg ctcgacwttt tgctgcgggg agccgcagtg gagaagggcc ccctcaagga      1500
     gctcgacctg cagatccgca ggtcttgcaa gacgtggctc aacctccckc agagagcgag      1560
     cgccgaaatg gtctacatgc cccctcgcaa ggggggatgt gggctacttc ccctagctga      1620
     cctcgccgac gtcctcwcga tcgcgcacgt cttccgtctt ttgacggcgg acgaccgcsc      1680
     ggtcagggac ctggcttggg cgtctctgcg gggagtggtt gcgcgccgcg tcggccaccc      1740
     ccctggttgc gaccagatcg ccgcctttct ctcggggtct ctcgwgggga ggttgagggg      1800
     gggaggggag tgctccctgt ggtcgagggc tcggaacgcc gcgcgtcatc gatcggatcg      1860
     ctgcgccatc cggtggctgt ggagcgagga gcgccgcgag ctcgtcctwc aatgtcgcgg      1920
     tccacggggc aggatcacca agatcccacc tggggctcgg gcccaggtga tcggacgcct      1980
     gcgcgctgcg gtggcggagt ggtatgaaac gaccttgacg cggaaaccag accaggggaa      2040
     ggtgttcgag gtatcgtcgc gtcatcgagt gagcaatcac tttatgcgag gcggcagctt      2100
     cacccgctcc gcttattggc gctttatcca ccgtgctcgt ctcgacgtgt tgccgttgaa      2160
     cggtgcccgt cgatggggag acggtgatag acgttgccgg cgwtgcgggg tggagtccga      2220
     gacccttcct catatggtct gtcattgcgg accccactcc gccgcgatac agtggcgtca      2280
     cgactcgatc ctgctccgac tcagcagggc ttgccgcctg ccagggcgcg tgaccgtgaa      2340
     ccagcgggtc gakggcctcg aaggggaact cggcgagcta cggcctgatc tcgtgawcag      2400
     gcacgagccg tcgaagagtg tcgtcatttg cgatgtcaag gtgccctttg agaatcggcc      2460
     agtagcgttc gakgaagcta ggkagcgtaa actcgccaaa tacgctccct tggcggaggc      2520
     gctcggtcga ctcgggtacc gtgtcgtcgt gacggccttc gtcgtcgggg cgctcggctc      2580
     ctgggatccg tgcaatgagc cggttctgag actgctgcac attggcagtg cgtacgcgtc      2640
     catgatgagc tggctcatcg tgtcggatac catacgctgg tctagggaca tctacgtgga      2700
     gcacgtctct ggcgtccgcc agtatagggc ttctctacgc cgagccgatg acggcgttcc      2760
     cgacgtctcg ccgctgcgcg cgattcgccg ccgtgtggcc ggcccgtgag ccgacgagac      2820
     agcggggact tgaatgttcg tatgaatgaa tgtcgcgtag ggccgccgac tggagaggtg      2880
     tccctgaaac aaaagaaata agtcttaatt ttatgttatt tagttattta ttttagtgtt      2940
     ttatttattt atttatttat ttgtatcctg tcctctgaga tattgactgt cgcgggggcg      3000
     gcggatgtgc tccgccgtcg cgcccgcggc tgatgtattt taagatgacg gactgaattt      3060
     ttatattatt tttattttta ttttaattat ttatttttat gtgtattgtg tcgtctgaaa      3120
     tgtggactgc cgcgggagcg gggacggatg ccctccgtcc ctgctcccgc ggctgaaata      3180
     ttttatgact atagacacaa tgtatgctca catatttagt tagtggaatg agcttattta      3240
     ttatatttca tgtaaatgga aggtgtgaat gtgagacacg ttcttaccat tagcgagtgc      3300
     attcccaggt ccctcttcca gctcggtgag ccgtcgatgt gtgtgtcgcg ttgagtatcg      3360
     agtgtggatg tcccgaaaat aatagattag ttcctaaggc cagcgtgcgt tgcatcggta      3420
     tggtgcgaat gactcggggg acaccaagta ggtgggcccg aaaatagaaa atatattagt      3480
     agtaaaataa taaaaaagta tattgttgat gaagcggatt gtccaggcct gctagcctgg      3540
     gcaatgtttt tattaagaat atacatatat ttacaataat atgcgtgttg atgcccacta      3600
     tcgggggggg agcaaattgt cccctataaa atatttaaaa cttgcgcctg gcctatgccg      3660
     gaatatacat tgtaattacc ccggggggca tgcccctcgg ggaacattta ttgctaaata      3720
     aa                                                                     3722
//
ID   Utopia-1_LAl repbase;    DNA;    INV; 2061 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_LAl.
XX
OS   Lasioglossum albipes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Halictidae; Halictinae; Halictini;
OC   Lasioglossum; Evylaeus.
XX
RN   [1]
RP   1-2061
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Fragment.
CC   Combine: ANOB01038936, ANOB01041646, ANOB01038544.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..1972
FT                 /product="Utopia-1_LAl_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="VRGGSSGLSTTGARGRGRVGDSSASRPPGRPEWRTQG
FT                 STDQVAEATRILMLFRQNRRRAVQEVLMGAPAQCQVPKDMVYRHFLDLYSP
FT                 ASTPPASGPLGFPSEAPTAASDAALVQPFGVSEVDRRLRRMSNSAPGPDGL
FT                 SYRDLWKADPGCVILTAYFNMCQRLESVPASWKSSNTVMIHKKGDREDLSN
FT                 WRPLAMSDTTPKLFAAVLSDRLVTWALHNERLSPQQKGFLPCEGCYEHNYV
FT                 LQEVLNDARRGRRQVVVAWLDLSNAFGSIPHSTIYHAFAEAKVPEPFRNIV
FT                 EGLYDGCTTRVRTSQGFTDPVPILSGVKQGCPLSPVAFNLALEPVLRAAAG
FT                 TSAGYSLHGRRYNILAYADDLALVADTPEGMETLLRTVEAAAGGVGLRFNP
FT                 AKCATLHQDSRGTRRAAPTSFSLQGQGLKSLAAGAPYEHLGVPTGFQVKQP
FT                 PLLSIEELVRDLRAVDRSLLAPWQKCEAVGSFILPRLDFLLRGAHGAKGPL
FT                 KTADKLVRKLAKSSWLNPQRASAEVVYLPPSRGGCGLLPLADLADALVIGH
FT                 AYRLLTAPDPAISGLARDSLRGAVARKIGRTPTEQDLATYLSGSLEGEFAR
FT                 TSSDFSTLWSRARNAARRMGDVLQLRWEWSAARLEMGVRLRGSRGRTTVVT
FT                 PSARYCTD"
XX
SQ   Sequence 2061 BP; 375 A; 618 C; 674 G; 394 T; 0 other;
     ggttagggga ggatcgagtg ggttgtcaac cactggcgcg agggggaggg ggcgtgtcgg        60
     cgattcctcg gcatcgcggc ctcccggtcg tcccgagtgg aggacacaag gaagtacgga       120
     ccaagtcgca gaggcaacgc gaatcctgat gctgtttcga caaaaccgca ggcgtgcagt       180
     ccaggaggtg ttgatgggcg ccccggcgca atgccaggtc cctaaagaca tggtatatcg       240
     gcacttcctg gacttgtact cacctgcgag tacgccacca gcctctgggc ctctcggctt       300
     tccttccgag gctccaacag cggcgagtga cgcggcactg gtgcagcctt tcggagtgag       360
     tgaggtagat cgtcgactcc ggcggatgtc aaattccgct ccggggcctg acggcctatc       420
     ctaccgtgac ctctggaagg ctgacccggg ctgcgtcatt ctgactgcat attttaatat       480
     gtgtcagaga ttggagtcgg tccctgcttc ctggaagtcc tccaatactg tgatgattca       540
     caagaagggc gaccgggagg atctctcgaa ctggcggcca ctagccatgt ccgacacgac       600
     ccccaaactt ttcgcggcgg tgctgtccga ccgtctcgtt acgtgggcgc tccacaatga       660
     gcggcttagc ccacaacaga agggcttcct gccgtgcgag gggtgttacg agcacaacta       720
     cgtgctgcag gaagtcctta acgacgcgcg caggggcagg cgtcaggtgg tggtcgcgtg       780
     gttggatctg tcgaacgcgt tcggctcgat cccccactcg accatatacc acgccttcgc       840
     ggaggccaag gtccccgagc ccttccgtaa catcgtggaa gggctctacg acgggtgcac       900
     cacccgggtg cgcacctcac agggcttcac cgaccctgtc cccattctct ccggggtgaa       960
     gcagggatgt ccgctgagcc ctgtagcgtt taacctcgcc ctggaaccgg tgctgcgtgc      1020
     agctgccgga acctcggcgg ggtactcgct gcacggccgg cggtataaca tccttgctta      1080
     tgccgacgat ctggcattag ttgcagacac cccggaggga atggaaacac tgttgagaac      1140
     agtggaagct gcggctggtg gggttggact tcggttcaac ccggcgaagt gtgcaacact      1200
     gcatcaggac agcagaggca ctcgccgggc tgcccccacc agcttcagct tgcagggtca      1260
     ggggttgaag tccctggcag caggagcgcc atatgagcac ctcggagtcc ccacaggatt      1320
     ccaggtcaag cagcccccgc tcctgtcgat cgaggagctc gtccgcgacc tccgggccgt      1380
     tgaccgttcc ctcctcgccc cgtggcaaaa gtgtgaggcg gttggctctt ttatattgcc      1440
     ccgcctcgac ttcctgctac ggggagccca tggggcgaaa ggtcccttga aaaccgcgga      1500
     taagcttgtt aggaagctcg cgaagtcctc ctggctcaat ccccagagag ccagcgcgga      1560
     ggtagtctac ctccctccca gtcggggggg atgtggactg cttccgcttg ccgatctggc      1620
     cgacgcgctg gtcatcgggc atgcgtaccg tctcttgacg gcgcctgacc cggcgatcag      1680
     tgggctggcc agagattctc tgaggggggc ggtagccagg aagatcggtc gtacacctac      1740
     cgagcaggac ctggcgacct acctctccgg ctcgctggag ggggagttcg ccaggaccag      1800
     cagcgacttc tccacactgt ggtcgagggc gcggaacgcg gcacggagga tgggtgacgt      1860
     cctccaattg cgatgggagt ggagcgctgc acgcctggag atgggtgtta gactccgggg      1920
     ctcgcgcggg cgcacgacgg tcgtgacacc gtcggccagg tattgcaccg actaagggcg      1980
     gcggtgaccg agttttatag tcaccgtctg accgctaagc cagaccaggg gaaggtcttc      2040
     ggggtgtcgt cgcggacgag g                                                2061
//
ID   Utopia-1_LFu repbase;    DNA;    INV; 2617 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2617
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01008518 6893 -> 4277.
XX
FH   Key           Location/Qualifiers
FT   CDS           467..2614
FT                 /product="Utopia-1_LFu_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="MDIGNWRPIALQPTMGKIFAGILADRIYEWAMRGRRI
FT                 SFPFQKGFIPGTEGCFEHNFVLNSVLEDARRNGKELAITWLDLADAFGSIP
FT                 HSHITRILTEMAMPNSLVRLIAAMYQGVTTRIEASTGTTTEVHITTGVRQG
FT                 DPLSPLLFNLAIEPLLRAILAKRATAGYGVGMTKWCVLAYADDIVVIAHNA
FT                 GALRALLHAAGTAATRSGLQFKPRKCATLHLDHTQGKRRILPTAFTIQNGE
FT                 IRALGEGEAFRYLGAPKGWKIKTTPTEMLRTLEKDLDALKGSQLAPWQRLD
FT                 AVRTFLLPRLDFHLRIAEFSKSALANIERKLIVAARDGLTIPVRGSREMAH
FT                 LPPQLGGAGIFPPRITKDILCIVHTFKMLTCRDPIVRDMAWHGLRDVVHRK
FT                 TGRTLPAPTNDVLMQFLTGSMEGRLGADVGDTTSQWSRARQATKSLQKHSG
FT                 LYWEWSKCQHNLNLRLLHPTPSNKTLSIGPNHRHLAVHLIRGAIEEGWRRS
FT                 LVAKLDQGKVFHAATRHPASAHFMRDGRRTRFCDWRFINRARLNLLPLNGA
FT                 RRGMTRGETTCRRCGKYEETLPHVLNHCTLHSAAWTERHNEVQQLLVDSLP
FT                 RGWTVRVDRRIPGEESLLRPDIVASESPSGPHHIIDITIPFENRQEALDVA
FT                 RTTKREKYVKVAEQLRERHAGAAVHLDAVIVGALGSGDANNDAVLRPLHIP
FT                 DRKMPTLQRKMVSAAI"
XX
SQ   Sequence 2617 BP; 735 A; 739 C; 653 G; 490 T; 0 other;
     aagccacgct ccactgcccc acgccgcagg aaagcaacaa caacgctacc agccacggaa        60
     atacagcgcc tgtacagaat tgagaaacga cgagcgttta aactcataac cgaggcacca       120
     tctcctgatt gccccatcgc cctcaaagac cttgccgctc acttcagcat cccaccgcct       180
     cctgtgaata tgggactggc accatcccag atatcactat caggaggcaa aatggggaag       240
     aggatagact gctgtgcata attaccccct cagaagtcat gggaaggcta cgtcggtgca       300
     gcaacaccac cccagggcca gatggtatac catatcgtgc atggaaacgc atcgatccag       360
     atggtaggat attagctgca gtattcaact attgtcttca agaagagtag gtccctgcca       420
     actggaaaca tagccgcacc atcttactgc acaaggggga gaagaaatgg acattgggaa       480
     ctggcgacca atagctttgc agccaacgat gggaaaaatc tttgccggaa ttctcgccga       540
     tcggatctac gaatgggcaa tgagaggccg acgcatctcc ttcccctttc aaaaaggatt       600
     tatcccaggg acagagggat gctttgagca taactttgtg ctcaattctg tgctcgaaga       660
     tgctcgacgg aatggaaaag agctagcaat cacttggctc gatctcgcag atgcgttcgg       720
     ctccataccg cacagtcaca tcacccgcat tctcacagaa atggcgatgc ctaacagcct       780
     cgtccgcctc atcgctgcca tgtaccaagg cgtgactaca aggatagagg cgagcactgg       840
     caccacaact gaggtgcaca tcacaacggg ggtacgacaa ggcgaccccc tctcgcctct       900
     cctcttcaac cttgctatcg aaccactact gagggcaata ttggcaaaac gagcgacagc       960
     aggatatgga gtgggaatga caaaatggtg cgtacttgca tacgcagacg acatagtcgt      1020
     gatcgcccat aatgctggag cacttagagc cttactccat gcagctggga cagcagcaac      1080
     acggagcggg ctgcaattta aacccagaaa atgcgccaca ctgcaccttg accatactca      1140
     aggaaaacgg aggatattac caacggcatt taccatccag aatggagaaa tcagagcgct      1200
     tggagaagga gaggcatttc gatacctagg tgcccccaaa ggctggaaaa tcaagacaac      1260
     tcccacggaa atgctgagaa cgctggagaa agacctcgat gctttaaaag gcagccaact      1320
     cgccccatgg caaagactgg atgcagtaag aactttcctt cttcctcggc tggacttcca      1380
     cctaagaata gcagaatttt caaaatcagc cctggctaat atagaaagga aactaatagt      1440
     agcagctcga gacggcctga ccataccagt gagggggagc agagaaatgg cgcatcttcc      1500
     accacagctg gggggagcag gaatcttccc accaagaatt acaaaagata tcctgtgcat      1560
     agtccacaca ttcaaaatgc taacgtgtcg ggaccccatc gtccgcgaca tggcatggca      1620
     tggtcttcgg gatgtagtgc acagaaaaac tggtcgcacc ctcccagctc ccactaatga      1680
     tgttcttatg caatttctaa cagggtccat ggagggtcgt ctaggggcgg atgtgggaga      1740
     cacaacatct cagtggtcaa gagcaaggca ggccacaaaa tctcttcaga agcacagtgg      1800
     gctttactgg gaatggagca aatgccaaca caacctcaac ctgcgactgc tgcatcccac      1860
     accctccaac aagacgctat ccatcggacc aaaccatcgc cacctcgcag tccaccttat      1920
     ccgaggtgcc atcgaagaag gatggagacg ctcccttgtg gctaaactgg accaagggaa      1980
     agtattccac gcagccactc gtcaccctgc cagtgctcac ttcatgaggg atggccgccg      2040
     cactcgcttc tgcgattggc gattcatcaa cagggcacga ctgaacctgc tccccctaaa      2100
     tggtgcgcga cgagggatga caagagggga gacaacatgc aggcgctgtg gaaagtatga      2160
     agaaacttta ccacatgtgc tcaatcattg cacgctccac tcagctgcat ggacagagcg      2220
     acataatgaa gtccagcagc tccttgtgga cagcctcccc agaggctgga cagtccgcgt      2280
     cgaccgccgc atcccagggg aagagtccct gcttcgaccg gatattgtgg catctgaaag      2340
     tcccagtggt ccccaccaca ttatagatat cacaataccg tttgagaacc ggcaggaagc      2400
     cctcgacgtc gcccgcacca ccaagcggga aaagtatgtg aaggtagcag aacaactccg      2460
     ggagcgacat gcaggagcag cggtccactt ggacgccgtc atagtgggag ccctcgggtc      2520
     cggggatgcc aataatgatg ccgtcctacg ccccctccac atccctgacc ggaagatgcc      2580
     gacgcttcag cgtaaaatgg tctccgcggc cattaaa                               2617
//
ID   Utopia-1_MRo repbase;    DNA;    INV; 2398 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_MRo.
XX
OS   Megachile rotundata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Apoidea; Megachilidae; Megachilinae; Megachile.
XX
RN   [1]
RP   1-2398
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   This consensus is reconstructed from 4 sequences with >94%
CC   identity. This is the 3' end of Utopia-type element. The 3'
CC   flanking sequence is the same as that of Utopia-1_NVit.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..1785
FT                 /product="Utopia-1_MRo_1p"
FT                 /note="restriction-like endonuclease."
FT                 /translation="AIEPMIRAAVLSGHGYVIADRKITALAYADDVNGRDQ
FT                 VQEEMKDLLKTIEDIARRLGLTFNPKKCATLHVNGRDQVLETRFEIGGELV
FT                 PALGKGEPYEHLGVPTGVQLDQTPYTTIRGVLGDLDAVDRSLLAPWQKLET
FT                 LAVFILPRLDFLXRGASMRRAFLSDLDAAIKRVAKGWLNLPQRASPEVLYI
FT                 PPSRGGCGVPPVADLAEVTLVAHAFKMLNAEDTTVSEIARXALKIAAREKL
FT                 RRDPTDEDLAQYLSGSLEGDWARPTTGRSSFWSRVRSAALRSSVRLGFRWE
FT                 YCADRAELSVACRAPNGCQVVIPPSAKATVISRMRAAVSEYWMSSLLRKPD
FT                 QGKVFDATSRHAASNRFMRTGEFIRFADWRFIHRARLDVLPLNGARRWGND
FT                 DKRCRRCGYDAETLPHVLGHCGPHSAARQRRHDNLVERLVRAIRLPGEIRV
FT                 NRRVQGISDASSAQRPDIVVTHEPSRTVVIIDVAVPFENTLAGVEEARVRK
FT                 IDKYRPLADSLQRRGYRVVVDAFVVGALGAWDLGNEFVLDLLRISPKYASL
FT                 MRKLMVAETIKWSRDIYVEHVSGIRQYTAQNEASTDIASNGNRISQTN"
XX
SQ   Sequence 2398 BP; 619 A; 586 C; 664 G; 526 T; 3 other;
     gcaatcgagc ccatgatccg cgcagcagtt ttatcgggac acggatacgt aatcgccgac        60
     cgcaagatca cggcattagc atacgcggat gatgtaaatg gacgggacca ggtacaggag       120
     gagatgaaag acctattgaa gacgatagaa gacatcgcgc gaaggctggg cctcaccttc       180
     aatccgaaaa aatgcgcgac gctacatgta aatggacggg accaggtact agaaacgagg       240
     ttcgagatcg gaggcgaact cgttccagct ctgggaaaag gtgaacctta cgagcatcta       300
     ggtgtcccca ctggggtcca gctggatcag acgccgtaca ccacgatccg tggcgtgctg       360
     ggcgacctgg acgckgtgga ccgctccctc ctagcccctt ggcagaaact tgagacgctg       420
     gcagtattta tactgccccg tcttgacttt ctgwtgaggg gggccagcat gcgtcgagcg       480
     ttcctgtcgg atctcgatgc agctatcaaa cgggtggcga aagggtggct caacctgccc       540
     caacgcgcga gcccggaggt actctatatc cccccctctc ggggaggatg tggagtaccc       600
     ccggtagcag accttgctga ggttaccctc gtggcccacg cattcaaaat gctgaatgcg       660
     gaggacacga cggtctccga aattgcaagg twtgcgttga aaatcgctgc ccgcgagaag       720
     ctgcgtcggg atccgacgga cgaggatctc gcacaatacc tctcgggttc gctcgaggga       780
     gattgggcga ggccgacgac ggggcgctcg tcgttctggt cgagggtgcg atctgcagcg       840
     ctcaggtcga gcgtacgtct cggctttcga tgggagtatt gcgctgatcg agctgaactc       900
     tcagtggcgt gcagagcacc gaacggatgt caggttgtga tccctccgtc tgccaaggca       960
     accgtcatca gcagaatgag ggccgccgtt tccgagtatt ggatgtcctc gcttctgagg      1020
     aagccggacc aggggaaggt gttcgacgca acttcccgcc atgcagcgag caatcgcttc      1080
     atgcgtacgg gtgagtttat ccgcttcgct gattggcgct tcatccatcg ggcccgcctc      1140
     gacgtgctcc ccttaaatgg ggcgcgtcga tgggggaacg atgataagcg ttgccggcga      1200
     tgcggatatg acgccgaaac ccttccccac gtactcggac actgcggccc ccattctgcc      1260
     gccaggcagc ggaggcatga caacctcgtc gagaggctcg tacgggcgat ccggctcccg      1320
     ggggaaataa gggtgaacag acgcgttcag ggcatcagcg acgcgtcctc ggcgcagcga      1380
     cccgacatcg tggtaacgca cgagccgtcg aggaccgtcg tcatcatcga tgtagccgtg      1440
     cccttcgaga acacccttgc gggagtagag gaggcaaggg tgcgcaagat cgacaagtat      1500
     cggcctctgg ccgatagctt gcagcggcgc ggctacagag ttgttgtcga cgcgttcgtc      1560
     gttggtgcac tgggcgcctg ggatctcggg aacgagttcg tcctcgatct cctccgaata      1620
     tctcctaaat atgcctcttt aatgcgcaaa ctgatggtag ctgaaaccat taagtggtct      1680
     agggatatat atgtggaaca cgtgtcggga ataaggcaat acactgccca aaatgaggcg      1740
     agtacagata tcgcgagcaa cggaaataga ataagccaaa ctaactaaaa ggaaaggaac      1800
     cgaccatacg ataaaacaat aaaagtgcaa tatattgata ttgagctaga catagcagta      1860
     ataatgagaa ctagacaagg aaataacatc aactggaaaa atgcgaggcc cagtatattc      1920
     tacgctaccc cattaaaaga taccttattg aataccattc tgttctattt tattccactg      1980
     tgctttattt tatattattg aattgaaagg aatgctccat ctcctcccca cacaaacgcg      2040
     gagagatgta tatatatata tagaaaacat tgtaatctat tatattgaaa atgttatgtt      2100
     tcccccttag ggttttttgt atttttattt atgcatctat tattggaaaa cgaagctgcg      2160
     gaagagaggg tccaagagga ccacgacttt taatataagt gacgcgcctg accaaaaagg      2220
     agaaagatgg gagggcaagc gaaaaatgaa caatagataa gcatggaaga aactatttct      2280
     aaatgcgggt gatatttata tattattgta tcaattacgt ttgagactga gaaatttatg      2340
     tatcaccctg cagcttcggc tgtggggaaa cattcattgc taaataaact tcaattta        2398
//
ID   Utopia-1_NVit repbase;    DNA;    INV; 3968 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_NVit.
XX
OS   Nasonia vitripennis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Terebrantes; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia.
XX
RN   [1]
RP   1-3968
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   This non-LTR retrotransposons are preferentially inserted into
CC   U2 snRNA gene. The position of insertion is the same as those of
CC   Keno elements, a lineage of the Tx1 clade non-LTR
CC   retrotransposons. More than 30 sequences are >97% identical to
CC   the consensus. No TSDs are generated with insertion.
XX
FH   Key           Location/Qualifiers
FT   CDS           103..3711
FT                 /product="Utopia-1_NVit_1p"
FT                 /note="RT and restriction enzyme-like nuclease
FT                 domains."
FT                 /translation="SGXTGREVKCITVNVLMEQQPHTKAIREGDFIVILLP
FT                 QSDDETLCCPLCVGRGRYSGKTRVECLNRHVKEVHPDLTTTFRCWGCGFAA
FT                 PGDKKYPRKIVTQHCATCVPEVSSAPSGRVDGERRVNTRRRLGIAAATEAS
FT                 PVRRTRRNGLASPPVEQNISQSAAPPEPARVPQHPEIVALGESADDEVFRS
FT                 PVNSPPRDWRAAAPQQAASSSPXAVPGITAATPSNTTRTGNGSAXSILAEH
FT                 PIPAPPPTNTTEANGRADIPRSGRAPPPGXQAARRRAPTTEQRRIVGLLEA
FT                 ATGREQLEEATTQAMLFLARLTGRRPEPRNAIRPGXRQRHPAQGDVQAQAP
FT                 DRIXEAKKLQRLYRTSKKRAVQKILAGPXMNCQIDKNTITAHFVELAARRD
FT                 GGEDWPDVFDREEPTAASGEALCTPITREEVFRRLKGRNNTSPGPDGITYR
FT                 DLAKAXPGAHVLAALYNXIWRIEATPALWGVSNTTLIYKKGDAMDISNWRP
FT                 ISLGDTVPKLFAAILADRIKRWAVANGRYSASQKGFLEFEGCYEHNFVLQE
FT                 AIREAKGGRKELVVAWLDLASAFTSVPHSSILQALEGHGLPSKARNIISSL
FT                 YTGMTTRFHTAEGPTDPILIQSGVRQGCPLSPDVFNLTLEVVLREIQRTGE
FT                 GYTIEGRRISHLAYADDVAILADSPAGMRRLLFAAERGARAVGLTFNPAKC
FT                 ATLHIAGRGEEAVRPTEFSVQGTPVRALASGEAYEHLGIPTGYQVRQTPIN
FT                 TLRDLLADIGSIDRSLLAXWQKLDAVGTFLLPRLDFTMQGAHIDKGFLTEA
FT                 DKIIKKAAKSWLSLPQRASAELVFLPPSQGGGGLLTVAHSYKMLYSSDVTV
FT                 STIAGSTLRRTVSERLKKRASNIDIARFLSGDLDLPRSTSPSTFWTKVRSA
FT                 ALRIKTKLGLRWSWCQGGEVLLMACGDPRAPGTRVSPQTKHLVTTSLRRCL
FT                 NRHYAESLLAKKDQGKVFEVTRRSGQSNHFLRSGSFTRFCDWRFIHRARLD
FT                 VLPLNAAKRWQRGMDKRCRRCGSDLETLPHVLSHCGPHSAARQKRHNNIQD
FT                 RLVKAASRCPGTISVNQTVVGVRGPDAALRPDIVVRDDVNRRVTIVDVAVP
FT                 FENRLEAFDGVREAKIAKYTPLARQLTDSGYTVTVEAFVVGALGAWDPRNE
FT                 RVLSLLSISRYYAILMRRLMVSDTIRWSRDIYVEHVSGIRQYRE"
XX
SQ   Sequence 3968 BP; 867 A; 1173 C; 1149 G; 763 T; 16 other;
     ccattccttc gtacgggttt tcgtgccggc atagccgggt gggagactcg cgcgggggag        60
     gtcatatctc accaccatcc tcgagctttt tgctgcacct gatccgggmt aactggccga       120
     gaagttaaat gtattactgt taatgtactc atggagcaac aaccacacac caaagcgatc       180
     cgggaggggg acttcatcgt gatactcctc ccgcaaagtg acgacgagac actttgctgt       240
     ccactctgcg tgggacgcgg acggtactcc ggcaagacgc gggttgagtg tctcaataga       300
     catgtcaaag aggtgcaccc agacctaacc accaccttta ggtgctgggg gtgcgggttc       360
     gcggctcccg gggataagaa atatccccgg aagatcgtga cccagcactg cgccacctgc       420
     gtccccgagg tttcgtccgc gccctcgggc agagtggacg gagagaggag agttaacacc       480
     cgccgtcggt tgggtattgc cgcggcaacc gaggccagtc ccgtgagacg tactcgtcgt       540
     aacggcctgg cctcacctcc agtcgagcag aacatcagcc aaagcgcggc tcctccggaa       600
     cccgcaaggg tgccacaaca tccggagata gttgcgctgg gagagtcagc ggatgacgaa       660
     gtatttcgat ctccggtgaa ctctccccca agagactgga gggctgcggc gccccaacag       720
     gcggcttcct cctctcctcs ggcggtgccc ggtatcactg ctgcaacccc gtccaacacc       780
     accaggacag ggaatggctc ggcanactcc atcctagccg agcacccgat acctgcacct       840
     ccgccaacca acaccacgga ggcgaatggt cgtgccgaca taccccgttc tgggcgggct       900
     ccgccgcccg gtcnacaagc cgcccgtaga agggctccca cgacagaaca acgtcgcatt       960
     gtgggactcc tcgaggcggc cactggtcgg gagcagcttg aggaggcaac gactcaagct      1020
     atgctattcc tggccagatt gaccgggcgg cggcctgaac cccggaacgc cattcggccg      1080
     ggamcgcggc aacgtcatcc agctcagggg gatgtccaag cgcaggcgcc tgatcggatt      1140
     casgaggcca agaaactcca gcgtctctac cgaacatcca agaagcgggc agtmcagaag      1200
     attttggcag gtcctnatat gaactgccaa atcgacaaga ataccatcac agcccacttt      1260
     gtggagctgg ctgcccgcag agacggtgga gaggattggc ccgatgtctt cgatcgggaa      1320
     gagcccacgg cggcgagcgg cgaggccctt tgtaccccta tcacaaggga ggaagtgttt      1380
     cgacggctca aggggaggaa caacacctca cctgggccgg acggaatcac ctacagggac      1440
     ctcgccaagg ccsatccagg ggcccatgtg ctcgccgccc tctataacas catctggcgc      1500
     attgaggcga cgcctgcctt gtggggggtg tccaacacma ccctkatata caagaaaggc      1560
     gacgccatgg acatctccaa ctggagaccg atctccttgg gagatacggt ccccaagcta      1620
     tttgccgcga tcctggccga tagaatcaaa aggtgggccg tggccaacgg gcgctacagt      1680
     gcctcccaga agggcttctt ggagttcgag ggatgctatg aacataactt cgtgctccag      1740
     gaggccattc gggaggcaaa aggcgggaga aaggagttgg tggtggcctg gctggactta      1800
     gccagtgcct ttacatccgt gccccactcc tctatcctgc aggcgctcga gggacatggc      1860
     ctaccaagca aagcgagaaa cattatctcc tcgctctaca caggcatgac cacccgcttc      1920
     cacacggcgg agggacccac cgaccctatt ctcatccagt cgggggtcag acagggttgc      1980
     ccattaagcc ccgacgtgtt caaccttacc ctggaagttg tcctacggga aatacaacgg      2040
     acgggggagg gctacacgat cgagggcagg cgtatttccc atctcgccta cgccgatgat      2100
     gtcgcgatcc tggctgactc cccggctgga atgaggaggc tgctttttgc agcagaacgg      2160
     ggagctcggg cggtcggcct caccttcaac ccagcgaagt gcgctacact gcacatagcg      2220
     ggacgaggkg aggaggcagt tagaccgact gagttctccg ttcaagggac acctgtccgt      2280
     gcccttgctt ccggggaggc ctacgaacat cttggcatcc ccacaggcta ccaagtcagg      2340
     cagaccccaa tcaacacctt gcgggatctc cttgctgaca tcggctccat cgaccggtcc      2400
     ttactggcgs cctggcagaa gctggatgca gtgggaacct tcctactgcc ccggcttgat      2460
     ttcaccatgc agggcgccca tatcgacaag ggcttcttga ccgaggcgga caagatcatc      2520
     aaaaaagctg caaaatcttg gctaagcctt cctcagcgag cgagcgcgga gctcgtgttt      2580
     ctacctccct cgcaaggggg agggggtttg ctcacggtcg ctcacagcta taaaatgctg      2640
     tactcgagcg atgtcaccgt gagcaccata gcgggatcca cactgaggag gaccgtttcg      2700
     gagaggctta aaaagcgggc gtctaacatc gatatcgccc gcttcctctc cggagatctt      2760
     gatctgcccc ggtcgacgag cccgtcgaca ttctggacca aggttcggag cgcggccctg      2820
     agaattaaga ccaaactcgg gctgcgctgg agctggtgtc agggggggga agtactcctg      2880
     atggcctgtg gggatccacg tgcccccgga acaagagtct cgccgcagac aaaacatctt      2940
     gtcaccacga gtctgcggcg ctgcctgaat cggcactatg cggagagtct ccttgccaaa      3000
     aaagatcaag gcaaggtctt tgaggttacc cggaggagcg gacaatccaa ccacttcctc      3060
     cggagtggca gcttcactcg cttctgcgac tggcgcttta tccaccgcgc ccgtctcgac      3120
     gttctccccc tcaatgctgc caaacggtgg caacgaggga tggacaagag atgtcgcaga      3180
     tgcgggtcag acctggagac tctcccgcat gtgctgagtc actgcggccc gcactcggcg      3240
     gcgagacaaa agaggcacaa caacatccag gacaggttgg tgaaggcagc ctcgagatgt      3300
     ccggggacca ttagtgtcaa ccagaccgtt gtgggcgtcc gcggccccga cgcggcatta      3360
     agacckgaca ttgtcgttcg cgacgatgtc aaccgccgcg tcaccatcgt cgatgtggcc      3420
     gtgccgttcg aaaaccgcct cgaggcgttc gacggcgttc gkgaggccaa gattgccaaa      3480
     tatacacctt tggccaggca actcacggac agcggttaca ccgtaacggt ggaggccttt      3540
     gtagtgggcg ccctcggcgc gtgggacccg cgaaatgaac gggtcctgag cctcctcagc      3600
     attagtcgtt attatgcgat actgatgagg aggctcatgg ttagtgacac aattcgctgg      3660
     tcccgggaca tctacgtgga acatgtgtcg ggcattcggc agtaccggga atagtggggc      3720
     cataacacct aggccccaca gtgtggcgat gtccatgtgt gtcgtcctta cttatttatt      3780
     tatttgtcct gtcgagctgt ttaatctatt catatgtatg tgttgtgtgt gtcgtccctc      3840
     gtagcagttt tattccgtcc aaccagaggt cgaccaatat taaaataagc atggcttgaa      3900
     gcaggccaag cgccgtgttc taaccccgtt ttaggggaag ttacttaacc taaaaataca      3960
     acttttcc                                                               3968
//
ID   Utopia-1_PBa repbase;    DNA;    INV; 4186 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons - consensus.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-1_PBa.
XX
OS   Pogonomyrmex barbatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita;
OC   Aculeata; Vespoidea; Formicidae; Myrmicinae; Pogonomyrmex.
XX
RN   [1]
RA   Smith C.R., Smith C.D., Robertson H.M., Helmkampf M., Zimin A.,
RA   Yandell M., Holt C., Hu H., Abouheif E. et al.;
RT   "Draft genome of the red harvester ant Pogonomyrmex barbatus.";
RL   Proc Natl Acad Sci U S A 108(14), 5667-5672 (2011).
XX
RN   [2]
RP   1-4186
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [2] (Consensus)
XX
CC   ~90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           503..3325
FT                 /product="Utopia-1_PBa_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="GGVASGSEGGVGPEGEGASGEGSAPAGPSASGEARAD
FT                 WVREAKRLQALYRANRRKAVREVLQGPXDSCQVPRRQVQEYFERLYRGEEI
FT                 LAGSGVEAERTDLSGSQEEFAYLLNPFTEREVDRRLRRMNNSAPGPDGVTY
FT                 RDLRGADPGTRLLTAMCNCCLRLEAVPASWKTSSTILVYKKGDRGMLENWR
FT                 PLALGDTVPKLFAAILADRLTDWAVANCRLSPAQKGFLRDEGCFEHNFVLQ
FT                 EALTDARRSRRQAVVAWLDLSNAFGSIPHATIRRALAGAAVPKGLINIWGS
FT                 MYDGCTTRVRTAEGFTAPIPIRSGVRQGCPLSPIIFDLAIDSVLRAATDVD
FT                 AGYHMFNNKFSVLAYADDIALLTETPESMRRLLNAVETEAASVGLRFNPAK
FT                 CATLHIGTGGCGRVLPTSFSIQGQPVRHLAEGEPYTHLGVPTGFSVDQTPY
FT                 ATIGDLLSDVRAVDRALLAPWQKCDIXGTFILPRLDFLLRGASVEKRPLTA
FT                 ADLAIRRLAKSWLNLPQRASAEGVYMPPRWGGCGLLPLADLADVLSVAHAF
FT                 RMLTAGDATVRRLAWESLTGVVQRRIGHAPSCENIAAFLSGSQEGRLRGGG
FT                 EKSLWSRARNAARRLSERLSLRWRWVPETEEMIVECRGPRGAAVKIPPGAR
FT                 NQVVNRLRSAVAEHYAERLLSKPDQGKVFEVSSRVPVSNHFVRGGSFTRFA
FT                 DWRFIHRARLDVLPLNGARRWGDGDKRCRRCGEVSETLPHVLGHCGVHAAA
FT                 IQLRHNAVLHRLWKACRLPGDKRVNQRIEGIDGELGELRPDLVIRHELSKS
FT                 VVICDVTVPFENRWMSFEEARGRKIAKYSPLAEELQRRGYRVLVTAFVVGA
FT                 LGSWDPRNEAVLRVLRIGGPYASMMRRLIVSDTIRWSRDIYVEHVSGVRQY
FT                 QAPSRPAGDGMLATPPRAVRRRWAVAXKEVATRRVSP"
XX
SQ   Sequence 4186 BP; 714 A; 1159 C; 1323 G; 979 T; 11 other;
     ccgcgtgagt cgsgagtcac accgccacca gcgtcggcga cagacggmaa caacaatgtg        60
     aggacggccc acaagactcc accaccgaca agtgaggcgg caatttgttg cgggacatcg       120
     ccggcggagc gggagggaga tatccgggta ctggagttga ggtgagtgcc gtacatccgt       180
     gtgctcccgt aagtgtccgs ggtgtwatgg ctcggcgacg cgcacgggca ccccgcgagg       240
     aaggcggggc gtctccggcc tctgccggtg gaaggggggg tgggcgacgg ggtcgcgagc       300
     ggtcagccgt cgcgccgtca accggcgcct gctcctgcag cgatgcgggt caggcgcggt       360
     tggctgtgcg cgagctggcc gcccgggcgc cgggctacgc gcgccgaact ggaggcgttc       420
     gcggcggaag tcgcggcgtt cttcggggag gtcgttgcgg acagggcgcc gccgcccaag       480
     accgtccggc tcggtcscgt gaggcggggt cgcgtcgggg agcgaggggg gtgtcggtcc       540
     ggagggagag ggcgccagtg gcgaggggtc ggcaccggcc ggcccctctg cgtcgggaga       600
     agcacgcgcg gactgggtgc gtgaggccaa gcgcttgcag gcgctctaca gggcgaatcg       660
     ccgcaaggcg gtgcgagagg tgctccaggg gcctgncgac tcgtgccagg tgccgagacg       720
     tcaggttcag gagtacttcg agcgcctgta ccgcggcgag gagatcctgg cgggttccgg       780
     cgtggaagcc gagcgcactg acctctcggg ttcgcaggag gagttcgcgt atctcctgaa       840
     tcccttcacg gagcgagagg tggaccgtcg gctccggcgt atgaataact ctgcgccggg       900
     tcccgacggc gtcacctacc gtgacctccg tggggcggat ccgggaacgc ggctcctcac       960
     agcaatgtgc aattgctgct tgcggctcga ggcagtcccc gcgtcctgga agacctccag      1020
     tacaatactt gtgtacaaga aaggagaccg gggcatgctg gagaactggc gccctctcgc      1080
     tttgggggac accgtcccca aactcttcgc cgcgattctc gccgatcgtc tgaccgactg      1140
     ggcggtcgcc aactgccggc ttagtcccgc ccagaagggc tttctgaggg acgagggatg      1200
     cttcgagcac aatttcgtcc ttcaggaggc cctgactgac gcgaggagga gccggaggca      1260
     ggcggtcgtc gcgtggctgg acctgtccaa cgcgtttgga tcgatcccgc acgcgacgat      1320
     ccgccgtgct ctggctggag cggcggtgcc taagggcctc attaatatat ggggctcgat      1380
     gtacgacggc tgcactacgc gtgtgcgcac cgccgaggga ttcaccgcgc ccatccccat      1440
     acgctccgga gtacgccagg gttgtccgct aagcccgatt atttttgacc tcgcgatcga      1500
     ctcggtgctg cgtgcagcca ccgatgtcga cgcggggtac catatgttta acaataagtt      1560
     tagtgttttg gcttacgcgg acgacattgc actcctgaca gagactccgg agagtatgag      1620
     gagactgctt aacgcagtgg agactgaagc ggcgtcggtg ggtttgcggt tcaaccctgc      1680
     caaatgcgcc accctgcaca tcggcacggg tggttgcggc agggttctgc cgacgtcgtt      1740
     cagcatccag ggccaaccgg tgcgtcatct ggcagagggt gagccttaca cccacctcgg      1800
     tgttccgacg ggattctcgg tcgaccagac accctacgcc accatcgggg acctcctctc      1860
     ggacgttcgc gcggtggatc gcgccctcct cgccccgtgg cagaagtgtg atatastcgg      1920
     gactttcatc ctaccgcggt tggattttct gctgcgggga gccagtgtgg agaagcgtcc      1980
     cctcacggcc gcggatctcg cgatccggag actcgcgaaa tcctggctga atctccccca      2040
     gcgtgccagc gcggaggggg tctacatgcc cccgcgatgg gggggatgtg gactccttcc      2100
     gttagctgat ttggcggacg tcctgtcggt ggcacacgcc ttccgtatgc ttacggctgg      2160
     cgatgccacc gtcaggcgtc tcgcctggga gtcgctgacg ggggtggttc agcgcaggat      2220
     cggccacgcc cctagttgcg agaatatcgc cgccttcctt tctggctcgc aggaaggaag      2280
     gctgaggggc ggaggggaaa aatccctctg gtcgagggcg cggaatgccg cgcgaaggct      2340
     gtccgagcgg ttgtctctgc ggtggcggtg ggtgccggag accgaggaga tgatcgtcga      2400
     gtgccgaggg cccagaggtg ccgcggttaa gatcccacct ggagcgcgta accaggtggt      2460
     gaatcggttg cgctcagctg tagccgagca ctacgcggag cgattgctca gcaaacccga      2520
     ccaaggtaag gtcttcgagg tgtcgtcgcg agtgccagtg agcaatcact tcgttcgcgg      2580
     cggcagcttc acccgcttcg ccgactggcg ctttatacat cgagctcgtc tcgatgtcct      2640
     tcccctcaac ggcgcgcggc gttgggggga cggcgacaag cgctgtcggc gatgcgggga      2700
     ggtatcggag accttaccac atgtgctcgg tcactgcggc gtccatgctg ccgcaataca      2760
     gctgaggcac aatgccgtat tgcaccgcct ctggaaggct tgccgtctgc ctggtgacaa      2820
     acgggtcaac cagcggattg agggcatcga cggggaactt ggggagctac gacctgatct      2880
     tgtgatcagg cacgagctct ccaagagtgt cgtcatatgc gatgtcacgg tgcccttcga      2940
     aaaccgctgg atgtctttcg aggaagccag ggggaggaaa atcgccaagt actctcccct      3000
     ggctgaggag ctccagcggc gggggtaccg tgtcctcgtg acggccttcg tcgtcggtgc      3060
     tctcgggtcg tgggatccga gaaacgaggc tgtcctgagg gtgctgcgga ttggcggtcc      3120
     gtatgcctcg atgatgcggc ggttgatcgt ctcggatacc atccgctggt ccagggacat      3180
     ctacgtggag cacgtgtccg gcgtccgcca gtaccaagct ccctctcgcc ccgctggcga      3240
     tggaatgctc gcgacgccgc ctcgggccgt ccgccggcgc tgggccgtcg ctgakaaaga      3300
     agttgcgacg cgccgcgtat ctccgtgagt gtgaatgtcg cgtaatttat ttttgtcttt      3360
     gtcttggccc cccttcttat ccaagcgggc aggagcggcc gatgtccaca tcttcgtatt      3420
     ataatttttc ttttaatttt taattttaat ttattattat ttgtatatat ttttttcttt      3480
     tctttttttt aktatttctt ttttattttt attattttgt tattttatta ttttcttttt      3540
     tttcgagata tgtggacagg gctcctgccc gcctcttatt agtctcagga caccctttta      3600
     tttttgtatg tttatttcgc caattttatt gcccggaccg tagttattta ttttcttttt      3660
     acttgtattt ttatttattt ttatttattt ctatttattt atttttattt ttattttatt      3720
     tttatttatt tatatttatt ttatcttatt ttcttttctg tggggccatg aatgttcgag      3780
     tgtgmgtgcc gcgtaaacct tattgtattt taagcgagtg tgagtgtgcc gcgttgacca      3840
     ttatctattt tawtttatta attattgccg cgcgcgcgcc ctcggggtct tttatcgttt      3900
     aactacctat ctgtgataca ccccgagggc cgccaattat tacttgcgtc atccccccag      3960
     cacgcgagct ggggggatca tttaatttta atttgcgcac gctggcgggg agcgaccccg      4020
     ccagctacac tagctttatg tagcgtgccc acaaggcggg gggagctatt gtcccccgcc      4080
     catatattat ttaatttgcg cgcggcctag ccgcttctct tatgtaccca ccccggaggg      4140
     tgagatgccc tccggggaac attaatttaa aataaaagtg agctaa                     4186
//
ID   Utopia-2_APi repbase;    DNA;    INV; 2569 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-2_APi.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2569
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Its 3' end is followed by a U2 snRNA gene. The 5' end is
CC   truncated.
CC   ABLF02021456 14527 -> 11959.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2394
FT                 /product="Utopia-2_APi_1p"
FT                 /note="reverse transcriptase and restriction-like
FT                 endonuclease."
FT                 /translation="FRDVWAPSTCNTDIFPRVDGRAPVPMGPFQCADVSKR
FT                 LGKFENTAPGDDGLTYRHWKKLDPECTVLTEVINVCLRYKMIPPAWKKAVT
FT                 VLIYKKGAKEDLNNWRPISLSRTLYKLYVGCVAGRLTEWLLSNKVLSPCQK
FT                 GFLPADGAFEHVHTLNRVLEKARTHAADKCVAWLDVSNAFGAIPHPALEAA
FT                 IERSGAGEDFLLAIRDIYTGATSSVSVAGGLTNDIPVRSGIKQGCPLSGLL
FT                 FIMAIDPVVTLLQGESVDHRVLAFADDLCLIADSPGELQASIDAAHSGLDM
FT                 LGLRLNAAKCASLHLSGRRPAVGVRDTQFLLQGSPLRPLAEGEAATFLGAQ
FT                 VGFNVVPPLSTLAEIIDIGLRIARSKLAPWQRIDALKTFFYPSTVHLQRLG
FT                 AFSKTDWARVDKILRPEIKATLYLPQEASGEYLYGSTKRGCCGIRLLAEDS
FT                 DIAAVDSGFKLITSPDVRVAGDAAEHVQEVTRRRISKDPSIHEVGAYLSGE
FT                 EEGVFREVRGTGVAGVWSRARNASKRLGVKWSLDGAPSITHEGTVLGGKHR
FT                 RAVMRTVRDTLRLKRSDALIAKPDQGRAVECVAVHSASSHFLRDGDFTRFA
FT                 DWRFVHRARLNLVPLNGFSSWRAGDRRCRRCGYINESLSHVVDHCMRYTAL
FT                 YMARHNAIVARIKKAASTRFEVLSENQVLGNQGLRPDLVLKKGPNIFVVDV
FT                 TVPFDNRLAAFEAAAAEKKGKYERLRAELAAIHGCEATVVPFIVGALGSWD
FT                 PANDPFMRVLCSRSYAALMRKLCVSDTISASRDIYIEHISGVRQVRA"
XX
SQ   Sequence 2569 BP; 511 A; 714 C; 782 G; 562 T; 0 other;
     ttccgggacg tctgggcacc gtctacgtgc aacaccgaca tctttcccag ggtggatggc        60
     cgtgctccag tgccaatggg cccgttccag tgcgccgatg tctccaaacg tctcggtaaa       120
     ttcgagaaca cggcgcctgg agacgacggg ctcacctatc ggcattggaa aaaactcgac       180
     cctgagtgca cggtcttaac ggaggtcatc aacgtatgcc tccgttacaa aatgattcca       240
     cccgcatgga agaaagcggt gacggtgctc atttacaaga agggagcgaa ggaggacctt       300
     aacaactggc ggcccatctc actcagcagg acgctgtata agttgtacgt ggggtgtgtc       360
     gccggtcggc tgacggagtg gcttctgtca aacaaggtcc tcagcccctg ccagaaggga       420
     ttcctgcctg cggacggcgc gttcgaacac gtccacactc tcaaccgagt gctggagaag       480
     gccaggactc acgcggcgga caagtgcgtg gcctggctgg acgtatcgaa cgcgttcggc       540
     gcgattccgc accccgctct ggaggctgca atcgagagga gcggggccgg cgaggacttc       600
     cttctggcca tccgcgacat ttatacggga gcgacgtcgt cggtgagcgt ggcaggaggg       660
     ctgacaaatg atatcccggt gaggtcgggc atcaagcagg ggtgcccgct gagtggtctc       720
     ctgttcatca tggccatcga cccagtggta acgctcctgc agggcgagtc cgtcgaccac       780
     cgggtgcttg cgttcgcgga cgacttgtgc ctaatagctg acagtccggg agagctccaa       840
     gcgtccatcg acgcggccca cagcggcctg gacatgcttg ggctccggct taatgcggcc       900
     aagtgcgcct cgctgcactt gtctggtcga cggccggcgg tgggcgtccg ggacacacag       960
     ttcctgctgc agggttcccc ccttcgtccg cttgctgagg gtgaagcggc caccttcctc      1020
     ggcgctcagg ttggattcaa cgtcgttcca cctctgtcca ccctagccga gattattgac      1080
     atcggtctgc gcattgccag gagcaaactc gcgccctggc agcggatcga tgcgcttaag      1140
     accttttttt acccctcaac cgtccattta caacggttgg gggcattctc gaagacggat      1200
     tgggctaggg tggacaagat cctgcggccg gaaatcaagg cgactctata cctgccgcag      1260
     gaggcgtcgg gggagtacct atacggatcc accaagcggg gctgctgcgg gatccgactc      1320
     ctcgccgagg actccgacat cgccgctgtg gatagtgggt tcaaattgat cacttcccct      1380
     gacgtgaggg tggccggtga tgcggcggag cacgtacagg aggtcaccag gcggaggatc      1440
     agtaaggacc cctccatcca tgaggtcgga gcctacctgt caggcgagga agagggcgtg      1500
     ttccgggagg tccggggcac gggagtcgct ggtgtgtggt cgagggcgcg gaacgcctcc      1560
     aagcggcttg gtgtcaagtg gtcgctggat ggtgccccct ccatcacaca cgaaggcacg      1620
     gtgctgggag gtaagcacag gcgggcggtc atgaggaccg tacgtgacac tctgcggctc      1680
     aaacgaagcg atgccttgat cgcgaaacca gatcaaggca gagccgtgga gtgcgtggcc      1740
     gtccactcag cttcctccca cttcttgagg gatggcgact tcacgaggtt cgccgactgg      1800
     cgctttgtgc atcgcgccag gttgaacctc gtgccgttga atggcttctc gtcgtggcga      1860
     gccggtgacc gtaggtgtag acgatgtggg tacataaatg aaagcctatc ccacgtcgtc      1920
     gaccactgca tgcggtacac cgcgctctac atggcgaggc acaacgccat agtcgccaga      1980
     atcaagaagg cagcatccac gaggtttgag gtcctctccg agaatcaggt cctgggcaac      2040
     cagggcttga gaccggatct cgttctgaag aagggcccaa acattttcgt cgtggatgtc      2100
     accgtgcctt tcgacaaccg gctggccgca ttcgaggcag cggcagcgga gaagaagggc      2160
     aagtacgagc gacttcgggc cgagttggca gcgatccatg ggtgcgaggc aacagtcgtg      2220
     ccttttattg ttggcgccct cggttcatgg gatcctgcca acgatccgtt catgagggta      2280
     ctttgcagcc gctcgtatgc tgccctgatg cggaagctat gtgtcagcga cacaatttca      2340
     gcttccaggg acatttacat cgaacatatt tccggggtgc gacaggtgag ggcctaagcc      2400
     cgcctgttgt attttttgtc tattttacct ttttttacca tttttacatt tattctgaaa      2460
     atactttttt tatatatatt tatgtttccc acccccctgt ctcgatttat tttgtctatg      2520
     taggttcccc atttttgtga atttttttaa gcatttataa ttgaataaa                  2569
//
ID   Utopia-2_LFu repbase;    DNA;    INV; 2004 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-2_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2004
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01011335 7139 -> 5136.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2001
FT                 /product="Utopia-2_LFu_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="AVVEDAWRNQKEVALAWLKTEESFCSINFKKILGTLR
FT                 LLGMPEKMLRVVDDFYSVDNKFVSHGCEQLGYKKMNQGCPLYSVLFVLSIE
FT                 PIIRAAMVKRAVAAYRLGTRSICILAHAGDMVLVARNSGMLRSLLWSVGKA
FT                 ADWISISFKASECASLHLHRMKVATSFTFQIQGNDIKPLYHGEFYDFLGFP
FT                 MGFRVKQVPMTAKKSFLKDLDSVDASNLTPWQKLNALRDSLIPRFESYIKA
FT                 HKVMKKYIIKVDKRICKIIRSWMSLPQRSSKEVIYLPPSLGGAGCLPFRFS
FT                 SDLLSIELGFHLLTSDDPMLQRSAMESLQDVVHRKIGRGKKPPNESILCKY
FT                 LNGNSSGRLGVDVGDASSTWSLIRKATRCAKSIVRIKWGWDNAVKKIFIKM
FT                 SALGFNEKVVKVSHSSRSCIYKFLRRAAVESFLKKLIAKPDQGKVYELSSI
FT                 SSVSNHFLRSGRYTRFCDWRFIHRARLNVLPLYAALRGGVCNETKCRWCYS
FT                 AEETLPHVLNHCPAHMKAIKMRHDIIANLLVSSLPSEWDVTVNKIVEGVNS
FT                 SLRPDLLVRESCEGFIHIFDVAVSFDNRPLAFTKARKLKIRKYSSLANSLR
FT                 HSLGCKFQVTLDALVIGSLGSWDQKNDRIFERLHISGKKARIIKEKMVSIA
FT                 IKWSRNIYIEHVTGICQC"
XX
SQ   Sequence 2004 BP; 583 A; 350 C; 448 G; 623 T; 0 other;
     gctgtagttg aggatgcttg gaggaaccag aaagaggttg ctctggcttg gctgaaaact        60
     gaggaatctt tttgctccat aaactttaag aagatcttag gaactctgcg cttacttggg       120
     atgcctgaga agatgttaag agtagttgac gatttctact ctgttgataa taaatttgta       180
     tcacatggtt gtgaacaatt gggctacaag aaaatgaatc aaggatgtcc tctatattcc       240
     gtcctctttg ttctgtcaat agaaccaatt atccgtgctg caatggttaa gagagcagtg       300
     gcagcgtatc gccttggaac tcgatcaatc tgcattttag cccatgcagg agatatggtc       360
     cttgtggcaa ggaactcagg gatgctgagg tctctgttat ggtctgttgg aaaggctgct       420
     gattggatta gtatcagctt taaagcaagt gaatgtgctt cactccattt gcatcgtatg       480
     aaagtagcga cttctttcac attccaaatt cagggtaatg atattaaacc tctatatcat       540
     ggtgaatttt atgatttctt aggttttcca atgggattta gagtaaagca ggtcccaatg       600
     actgccaaaa agtcttttct gaaagatctt gattcagtgg atgcaagcaa cctcacgcca       660
     tggcaaaaac tgaatgctct tcgtgattcc ctcattccac gatttgaatc ttatattaaa       720
     gcacacaaag tgatgaagaa atatattatt aaggttgaca aaaggatttg taaaataatt       780
     cgatcttgga tgtcccttcc tcagcggtca agtaaagaag ttatttacct ccctccctct       840
     cttgggggag ctggatgttt accatttcga ttttcctcag atttactctc tatagagctt       900
     ggattccatc tcctaaccag tgatgatcca atgctacaga gatcagcaat ggaaagtctc       960
     caggatgtgg tgcaccgtaa gattggtaga gggaaaaagc caccaaatga gagtattcta      1020
     tgtaagtatc ttaatggaaa ctccagtggt cgtcttggtg ttgatgttgg tgatgcctca      1080
     tccacctggt ctcttatacg gaaagctaca agatgtgcta agtctatagt gagaatcaag      1140
     tggggatggg ataatgctgt gaaaaagatc tttataaaaa tgtcagcttt gggattcaat      1200
     gagaaggtgg tgaaagtatc tcacagctca cggagttgta tttacaaatt tctaaggaga      1260
     gcagcagttg aatctttcct taaaaagctc attgccaagc ctgaccaagg taaggtttat      1320
     gagttgtcat caatttcctc tgttagtaat cattttcttc gaagtgggcg ttatacccgg      1380
     ttttgtgact ggagatttat acatcgtgcc agactcaatg tcctaccact gtatgctgct      1440
     ctcagaggtg gtgtgtgcaa tgaaaccaaa tgccgttggt gttattcagc tgaggaaact      1500
     ctcccccatg ttttaaatca ctgccctgca catatgaaag ctattaagat gagacatgat      1560
     ataatagcta atcttcttgt ttcctctcta ccttctgaat gggatgtaac agtgaataaa      1620
     attgtggaag gagtaaactc ttctctcaga ccagacctct tggttaggga gagttgtgaa      1680
     gggttcatac acatatttga cgtggctgta tcttttgaca ataggccttt agcctttaca      1740
     aaagccagaa aattaaaaat taggaaatat tctagtttgg ctaatagttt aagacattct      1800
     cttggttgca aatttcaggt aactttagat gctttggtta taggttcact tggaagctgg      1860
     gaccagaaaa atgacagaat ttttgaaagg cttcatatat cagggaagaa agccagaatt      1920
     attaaggaga aaatggtttc aattgcaatt aaatggtcaa ggaatattta tattgagcat      1980
     gtcactggaa tatgtcagtg tgat                                             2004
//
ID   Utopia-3_LFu repbase;    DNA;    INV; 2814 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-3_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2814
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01022670 4324 -> 7137.
XX
SQ   Sequence 2814 BP; 820 A; 665 C; 715 G; 614 T; 0 other;
     agagcaagga atgggctgga gagagtccca acagccacta cccaaggaga gagtgaaccg        60
     gaggtggcgg aaaccatacc acccacaagc gaagggccca gtggactttc agaactacag       120
     gctgtatggt tgtccaagtt gtcgctgttc tcggagggag acgaggcact actaggtaac       180
     ttcatcaagg tcatgataga ggagtgccag aaaatctctg gggaatgtcc agtggatata       240
     aatgtggcac catcaaacgg cctgacaccc gaacggcctg aatcagccat gcacctacag       300
     cagggataca ggcgtaacaa gggaaggacg tttcggaaga ttacaggtgc ttgggagaaa       360
     ttctgctgaa tctcaaagga agaggtgaaa aggcactcct ccagatccta cccatctcat       420
     cactggcgat ctccgccctc ctgtatcccc aatttctcaa gagtcggcac agtggcagag       480
     gagaagctgc ttccgccgtt cactcctagg gaggtatcta accgcctcca ggcaactaag       540
     aatactgccc cagggtttaa tggcataacc tatggcacat ggaagaaggt ggatccaggc       600
     agcagaattt tagcagaatt gtttagcctg ctgctccgtt tcggctggac tccagaagag       660
     tggaaaaaaa gtaggactgt cctggtgtac ataaaggaaa gaggatgata tagagaactg       720
     gctccccttg gctccacctt ggggaaattg ttttctgcac tgttagctga ccgaatctat       780
     gcatgggcaa ggagtagcag ccagctatcc ttccctacac agaagggatt tctaccaggc       840
     tgcggaggaa cggtcgagca ttcctttatg ctcaattcta tcatctagga ctgtagaaaa       900
     agaaagcaag aagcagcaat tgcatggcta ggtcttgagg atgcattcgg atctattcca       960
     cactcccaca tcttcagggt ccttcgtgaa atgggattac cgagtcaaat gttgaggatt      1020
     gtaagccagt tatacactgg gaacaccact gtcatacgcg ctggcgatgg ttatacagag      1080
     cccatcacag tactacgagg agtgcgccaa gggtgtccat tatcaccttt tttgttcaat      1140
     atggctcttg agccactctt acagtcagtc cttgtgaaga aagtggtggc aggttaccga      1200
     ctaggcccta gtaacatatg cgtacttgct tatgctgatg acctagtcct ggttgcccgt      1260
     gacgctggta tgctgagatc cctactctgg gtaaccggga aagcagcaga gtggagtgga      1320
     ctgcatttta agccaggaaa atgcgcaacc atgcaccttg attggagaca gatgcctggg      1380
     tgaggaatcc aacgcagcat ccttagtatc caaggctgcg acatgaaagc tctcatgtct      1440
     gaggactact acaaatacct ttgtgtccct actggcctcc ttgtggacca aacccccact      1500
     cagctatttg agagactaca gaaagatcta ctggcagtaa acaacagcca tcttgcaccc      1560
     tggcagtaga tagatgcttt ccaaacgttt ctcctaccaa ggtgcgacta tttcctgaga      1620
     accattacca tatcgaagaa acggatgcgg ccgtacgata gagtaatcaa aagagtccta      1680
     aaaggatggc tgaatgtccc catgtgagca gcgagagaac tcctatacct actcccttcg      1740
     actggaggag taggatatct accactgggg gtagcagcag atgtgatgat ggtcatccag      1800
     gcttttaaga tgctttcctg ccgggaaagg actgtaagag agacagcatg gtggggactc      1860
     aaagcaacac ttaaacagca tctcaacatg caagatctga agccatcaaa gtctgcactc      1920
     atcatgttcc taaatgggga cccgattcaa aggggacact atacaaggac caccgtaagc      1980
     ctttggtccc gaacaaggag agcaacaaga agattgcgct cccaaaccaa catctatggg      2040
     gaatggtcag ccccaaggag agaggtatca cttaggatac tgaatcctaa ccatcaatgg      2100
     caaatcatga ttgtaccaca aggcgcatcc aaccgtgtgt gtggcattct tcgatcagct      2160
     gtgcgagaag gcttccggag aaaactcctc accaaaatgg agcaaggaag agcatatggg      2220
     gcgacaaccc ttaactcagt cagcaaccac tttatgagga ctgggagata cttaagattt      2280
     tgtgattggc gatttattca tcgcgccaga ttgcacacac tccccctgaa gagtgctagc      2340
     tggaggaaga atagattgga cacccactgc aggctttgtg gggcagaaaa ggaaaacctc      2400
     tcccatgtcc tgaacaactg cctcctacac gcaaagatga ggactgaact acacgacaag      2460
     ataatttccc ttgttgctga tattcttccc agagaatgga ccataagact caaccgcacc      2520
     atatcaggaa caggctcctg tctacgacca gacatctacc tagaggatgg gaatgaaaca      2580
     gtgattgtgg atgtaactgt tccattcgaa aatggacccg aggcgcttgg tagagcaagg      2640
     gagggcaaga cggtaaaata taatgagcta gcagagatgg ttcgaataat ggggagatac      2700
     caaaacccag tacacctagg agcaattgtt gttggagccc ttggcgcatg ggatgagcag      2760
     aattcttagc agattacgca tcccgaaaca aaaaatccgg gagctaaaga gaaa            2814
//
ID   Utopia-4_LFu repbase;    DNA;    INV; 2753 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-4_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2753
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01023172 17077 -> 14325.
XX
SQ   Sequence 2753 BP; 603 A; 667 C; 755 G; 728 T; 0 other;
     tgtaatagca tcatacacct tcccttggtc cggcttgcca atcaatttac ttcgccatcc        60
     ctcatcaatg gaccgccgta tgagtgatga tcctgttaca gtaggttgct ggcatgataa       120
     ttaagtcgta cgttggagat gggtgcgcca ggtggatttc gaggtttttt tttcttgcat       180
     ccctccattc ccatgagagc ccgcacagat ttggagggag cgggtggtgc gttttatcct       240
     tgaccacagg gatatttatc accgacgttt aatcccaagt gcccttccat agatcctgac       300
     atgtattgtt ccagtatttg gttggatggt gtagggactt ctcttccaag ttttctatgc       360
     atggtgtctt ggaggcagta ccattccgcg tccttgacca gggcattgtg gtaggtaggc       420
     atccgatact tgtgcgccac gctaagaaga tctttcattg tggaggggag gattattccc       480
     gtgcccccta ggtgcaggat cttgcgactc gctctaaccg ggatggctat tctgctcggg       540
     tggcggttag aaggtttcgt tctgtttctg caagtgctgc cttggagaag tccgtaaccc       600
     ggaggtggaa gtcgagtcgt gagaggagga aggtccttat tgcatcaagt cgttgccatg       660
     gggtgaagct gctggcggtg atggctccta cgtctgcctg tatgccgtct agtctcctta       720
     ggcgttctat gtatttttca gcctttggga ttcccaagta ggtgtatttt tcgccttact       780
     ttagcatctg cataggccgg ccttggatat ggaattggga tgccttggtt ccttgcttgc       840
     ttgctgtgtg ggttaggtgt agggatgtgc acttcctagg cttaaattgg aggctgctcc       900
     atgtggctgc agagctcaca gcatggagga gctgatggag ggctcttgcg ctttttccga       960
     aaatcacaaa gtcgtccaca taggcgaggg ctgagatggt ggtattgcca aagttaaatc      1020
     ctatcgttgc cctgttgctt atggatgctt gcagaagtgg ttccagggat aggtgaaaga      1080
     ggagtggaga gaggggatct ccctgtctaa ctcctctgtt gattattggg gccgtcgttc      1140
     cctccgctgc ttctcagcac taaactgtgg acgaatactt aataaacaaa atacaataac      1200
     actattatga atattaggag aaactctaca acaaaagtta caagaactca gagcacttat      1260
     ctgacacgtc ttcacagctc aacagcagcg ctgccaacca gggatccctc cttaccaaga      1320
     ccggatgtcg tggtatcaga aggaaccaaa ggacccttcc acattattga cgtaacagtg      1380
     ccttttgata acagctggga agcaatgaat tctgcaagag ctgccacaag ggaaaaatat      1440
     tctgagtgcg tggaacgact ctgtgaacag cataacatca tccctgatat ccatctggat      1500
     gccttggtgg taggggcact aagatcctgg gatccgaaaa atgacaccat cctccaacga      1560
     ctccgcattc caaagagaaa tatcccggtg cttcaactta agatggtttc caaagatttt      1620
     tgccagggtt gattggagag gaattggccg ccagttgctg gtgtcgtcca tgtccccgcc      1680
     tttatgtagt agaatggtgc ggctgatctt ccatgctttg gggacatcat cctcctgtcg      1740
     tggtggtgca caccattgta ttctcagtgg agctggaggt ggagggggtg ggcgtagcgg      1800
     cgcaaatggt ggccattgga ggtttgggtg ctgctgctgt tgaccctgtc catggtacga      1860
     tgggggtgct ggacgcctcc atggatgtgg gttataccac attggatgct atggtggagg      1920
     atgtggtgct tatctcaatc taatttcctg ctccgaccat cctcctcttt gaggccgcct      1980
     tagactcata ttttctgtgg agccatgttg cagcggcatt cttgagggtc atcctctcca      2040
     ggactgcaat cgctctcaga gggaccatga catcttcttc aactccaata gttaacggaa      2100
     actcccacaa tgcggtgtac cagtgccacc tcaggttggt cagcctcttc aggcaccggg      2160
     atgccacgcg gaccttcgtg aagagggaga agttggaggg ctgctggctg aagtcatctt      2220
     ctaaagatcc ggatccggaa gtggcgcagt cctcctcagt ggggtaccga tggatctccc      2280
     tcctcactac ttcacgcaat tggcaccagg caacgctctg cactatgggg tcattacagt      2340
     ctaggagcct gaagacatgg gtactggcca agatgtccac taggtcaccc gaaggcaaca      2400
     ggcccattcc ccccctgcca ctgatgaagg tagaggacct caggcgaggc cctccatggc      2460
     aaagacatcc accgctttcc acattctcgg acgagacggt ctagaggctt cagcagctcc      2520
     ttcttcacca tgccagccct aagaatggag ttgagcctgg ggaggagaaa ggtggagagt      2580
     gcccaaaatt tctgccaagg cgtgaggagt gaggtgtcaa tcttcctaac atcctcggcc      2640
     aggcgatcca gctcttccct gggggtctag cagacgttgt agccaaacag gacccccagg      2700
     tatgagtagg gttctacctc cctcaggctt ggcggggatg ttccttgaaa gtc             2753
//
ID   Utopia-5_LFu repbase;    DNA;    INV; 2328 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-5_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-2328
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01034835 4467 -> 6794.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..840,844..2325)
FT                 /product="Utopia-5_LFu_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="QHRSPTECVARGQPTSKQMEWLITLGTMEGEDALEVL
FT                 VREITTEATALTRSKLKTWERDRETNSSCLQFLYKINKGAAFRKVISSSSS
FT                 RCDIPADPIISHFRRQPPSQTECPAPSVIPQMSFRKLPGENELLLRKISPT
FT                 EVRSRLQRCKNTAPRSDGATYQDFRRLDPDGRVLAGIFKLCLQRGRVLKLW
FT                 KSSRTVLIHKGGEAGDPSSWRPLALGAAMGKIFSGIIADRVLHWASKSGRL
FT                 SLPSQKGFMPQTEGCFEHNFLLQAALDDARRNRREIAVALDLADAFGSIPH
FT                 IHIFRVLQMMGMPAKMVELIRDLYSGTTTCFSLLSEETEEIAVSCGVRQGD
FT                 PLSPILFNLAIEPVISAALLKRPTAGYSFGPTSIAVLAYADDILLIGRNAG
FT                 MLRSLLFSIGTAAEWCGLSFNGKKCATLHLDLRKGGSKLQDSHFQIQKEEM
FT                 KALEEGESYRYLGCPIGFETDSTPDAALRNFRNCETLRDLRILSESSLLPW
FT                 QKIDALQVLPLSRLTFPLRIAAVSLKKLAEADNATRRSVKRWMGLPQYASR
FT                 EIVTMRNAHGGGGYMPLQVEHCILTTTQAFHMLSSRDAVVKEAAWYSLQDA
FT                 VHRRIGKKSSPPTRELLCKYLCGSMEEELARDAGDVASLWTRTKRAARSLA
FT                 PLCKIEWQWSEARKELRIRVANPSPSSELVVVPQSAYRRIHQTLREAVFEG
FT                 KRRELSGKIDQGRVIEAVSSAEVSSHFLQTGEHTSLGDWFFVHRARFNVLS
FT                 LLSSMHGRSWREDITCRKCGNAA"
XX
SQ   Sequence 2328 BP; 582 A; 621 C; 636 G; 489 T; 0 other;
     cagcacagat ccccaacaga gtgtgtagcc cgaggacaac cgactagcaa acaaatggaa        60
     tggctaatca cgctagggac gatggaagga gaggatgcac ttgaggtcct ggttcgagaa       120
     atcaccactg aggctaccgc ccttacgcga tccaaactta agacgtggga acgggataga       180
     gaaactaatt ccagctgtct tcaattcctt tacaaaatca ataagggtgc tgcattcagg       240
     aaggtgatct cctcctcctc ttccagatgt gacattcctg ctgacccgat tatctcgcac       300
     ttccgacgac agcctccttc gcagacagag tgcccggccc cttctgtcat tccacagatg       360
     tctttcagga agcttccagg ggagaacgaa ctgctcctga ggaaaatttc cccaactgag       420
     gtccgcagtc gtcttcagcg gtgcaagaat acagccccaa ggtcagatgg ggcaacttac       480
     caggacttcc gacgattgga tccagatggg agagtcctcg ctggtatctt caaattatgt       540
     ctgcagagag gacgggtcct aaagttgtgg aaatcctcaa ggactgttct catccacaag       600
     ggaggcgaag cgggggaccc ttctagctgg agaccactag ccctcggcgc agcgatgggg       660
     aagattttct ccggaataat cgcagacagg gttctccact gggccagcaa gagtggacgc       720
     ctctcccttc catcccagaa gggctttatg ccacaaacag aggggtgctt cgagcacaac       780
     tttcttttgc aagcagcact ggacgatgct cgaaggaaca gaagggagat cgcagtggct       840
     tgactagacc ttgccgatgc atttggttca atcccacata ttcacatctt tagggtcctg       900
     cagatgatgg ggatgccggc gaaaatggta gaacttatca gggacctcta cagcgggacg       960
     acaacctgtt tttcactcct tagtgaagaa actgaggaaa tcgccgtctc ttgtggagtg      1020
     cggcaaggag atcccctatc gcccatccta tttaacctcg cgattgagcc ggtcatcagt      1080
     gcggccctcc tgaagagacc gacggcaggt tactcattcg gccctacctc catcgctgtc      1140
     ctggcctacg ctgatgacat attactcatc ggcaggaacg ctggcatgct aaggagtcta      1200
     ctcttctcta tcggaactgc ggcggaatgg tgtggccttt ctttcaacgg aaagaaatgc      1260
     gccactctac acctagatct tcgtaaggga ggctcgaagc tgcaggactc ccacttccag      1320
     attcagaagg aagagatgaa ggcactggag gagggggaat cctacagata tctaggttgc      1380
     cccatcgggt tcgaaactga ctctacccct gatgcagcgc tgcgaaactt ccgaaactgc      1440
     gaaacgctgc gggaccttcg catcctctcc gagagcagtc ttctaccttg gcagaagatt      1500
     gatgctctcc aggtcttacc tctttccagg ctcacgtttc cactacggat agctgcggtt      1560
     tctctaaaga agctagcgga ggcagacaac gcgacgagga ggtctgtaaa gcggtggatg      1620
     ggtcttcctc aatatgcaag cagggagatc gtgacgatga ggaacgccca cggtggaggg      1680
     ggttacatgc ccctacaggt ggagcactgc atcctgacta caacacaggc tttccacatg      1740
     ctatccagtc gcgacgcagt ggtcaaagag gcagcctggt acagccttca ggatgcagtc      1800
     cataggagga tcggcaagaa aagctctccc ccaactcgcg aactcctttg caagtatctc      1860
     tgcggttcca tggaggaaga actggcaaga gacgctgggg atgttgcatc cctgtggacc      1920
     agaacgaaga gagccgcccg tagtcttgca ccactctgca agatagaatg gcagtggagc      1980
     gaggcccgaa aggagttaag gatccgggtg gcaaacccat cgccatcctc ggaactcgtt      2040
     gtggtcccgc agtccgccta tcgccggata caccagaccc taagagaggc tgtttttgag      2100
     gggaaacgga gggaactctc aggtaaaata gaccagggaa gggtgataga ggctgtctcc      2160
     tcagcagagg taagcagcca cttcctgcag acaggagagc atacatcgct gggcgactgg      2220
     ttctttgtgc acagggcccg attcaatgtc ctctctctcc taagctcgat gcacggccga      2280
     tcgtggaggg aggacataac ctgcagaaaa tgcggtaacg ctgcacag                   2328
//
ID   Utopia-6_LFu repbase;    DNA;    INV; 3122 BP.
XX
AC   .
XX
DT   07-OCT-2015 (Rel. 20.10, Created)
DT   07-OCT-2015 (Rel. 20.10, Last updated, Version -1)
XX
DE   A family of Utopia non-LTR retrotransposons.
XX
KW   NeSL; Non-LTR Retrotransposon; Transposable Element; Utopia;
KW   Utopia-6_LFu.
XX
OS   Ladona fulva
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Palaeoptera; Odonata; Anisoptera; Libellulidae;
OC   Ladona.
XX
RN   [1]
RP   1-3122
RA   Kojima K.K. and Jurka J.;
RT   "Ancient origin of the U2 small nuclear RNA gene-targeting
RT   non-LTR retrotransposons Utopia.";
RL   PLoS ONE in press (2015).
XX
DR   [1] (Consensus)
XX
CC   Both termini are uncertain.
CC   APVN01044638 3468 -> 349.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..2304,2022..3038)
FT                 /product="Utopia-6_LFu_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="TAPRAAPVDEGHAGVGPDSSAHIPDGLGAREMVDTVR
FT                 EEHNVNNRVNSKIRKGRERIEADRKLFAIPEEVLHTRNKKPSIPSPQEEPT
FT                 EEQMIWLIELGIRMHGDKELIHRIAAEMTNAATALSTTKQRSARQKHQLTE
FT                 EELIPQEIQSLYQRRKKAAFQKITSIPPLICPISINKITQHFNHQPPPFSK
FT                 GPAPSIIPAMKVQRIDGEEDLLCKNISAKEVQDRLKRAADSSPGPDGIPYK
FT                 AWRKIDPTGSILAALFSACLDEEIVLAEWKHSCTILLHKGGEPEDIENWRP
FT                 IALQPTLGKIFSGILADRIYSWAIKGCRLSFPFQKGFIPGTEGCFEHNFLL
FT                 GTAMDDARRNGKEIAIAWLDLADAFGSVPHKHIIRTLQDMEMPNSIIRLIC
FT                 NIYEGVTTKIEAKDGTTDPIPISSGVRQGDPLSPLLFNLALEPLLRTALSK
FT                 GMTAGYQLGKEKLVILAYADDIVLMAKSAGALHQILHSVSTAATWSGLSFK
FT                 PRKCASLHLDCTKGRRQLLPSSFDIQGRAMRTLKEGESYKYLGAPLGWHVT
FT                 ATPTEAIATLKDEIRAISNSNLAPWQKLDATRTFLLPKLEYPMRISDFPKG
FT                 ALNELEKQLYTAGRSWMWLPQRSSREALHLPPHLGGGGLFPPSVLKDILTV
FT                 AHGFKMLTCADPLTKGIAWESLRDRLHKKLEGEPRSQQILPSWNTSQAPWR
FT                 IASELTLEMQHPSGQECGRQLAPSAHTPQHLGNGAIPGRRSLSDSSIHHQQ
FT                 QRPSFSHRHIEGKQYLYTPQKIGRRTQIPTNTALMEYLSGSMENRLGANVG
FT                 DAASFWTRVRKATRTLRPHSAASWEWSDSRQEVSLRLQHPSPAAETLILPQ
FT                 THRRKAVPLLKKAAEEGWRRALVQKKDQGKVPDAVSLHPASSHFIREGRNT
FT                 RFCDWRFVHRARLNVLPLNGARHGNQRGDSRCRRCGAWDETLPHVLNHCAS
FT                 HSDGWTRRHNEIQNILINAFPSTHRVQIDRRIPEDESLLRPDILVSEGPQG
FT                 PYHIIDVTVPFENRRDALGKAREGKISKYMELAERLRVRHRYQVDVFLDAL
FT                 VVGALGSWDPANDRVLQNLRIPDRKIPALRRKMVSIAIKWSRDIYVEHIT"
XX
SQ   Sequence 3122 BP; 971 A; 807 C; 733 G; 611 T; 0 other;
     acagcacccc gagcagcccc cgtcgacgag ggccacgccg gcgtggggcc tgactcatcg        60
     gcccacatac cagatggtct gggagcaagg gagatggtgg atactgtaag agaagaacac       120
     aatgtaaata atcgtgtaaa tagtaagatt aggaagggga gagagagaat tgaagcagac       180
     agaaagctat tcgccatccc tgaggaagta cttcacacac gaaacaaaaa gccatcaata       240
     ccaagcccac aggaggagcc aacggaggaa cagatgatct ggctgataga actagggatc       300
     agaatgcatg gagataagga actcatccac cggatagctg ctgaaatgac aaatgccgcc       360
     actgcacttt caacgacaaa acaacggtct gcacgccaga aacatcaact gacagaagaa       420
     gagttaatac cacaagaaat acaatcattg tatcagcggc ggaaaaaggc agccttccag       480
     aaaattacct ccataccccc tctgatatgc ccgatatcaa ttaacaaaat aacccagcat       540
     ttcaaccacc aacctccacc ctttagcaaa ggcccagctc catccatcat ccctgcaatg       600
     aaagtgcaga gaatagatgg cgaagaagat cttctctgca aaaacatctc agcgaaagaa       660
     gtgcaggacc ggttgaaaag agcagcagat agctcccccg gacctgatgg gatcccatat       720
     aaagcatgga ggaagataga ccccacagga agcattctcg ctgctctctt ttctgcctgc       780
     ctggatgaag agattgtcct agcagaatgg aaacatagct gtactattct gctgcacaaa       840
     ggaggagaac ctgaggatat agaaaattgg cgccccattg ccttacagcc aacactggga       900
     aagatattta gtggaatatt ggcagaccgc atatatagct gggcgatcaa aggatgccgc       960
     ctatccttcc catttcaaaa gggattcatc ccgggaacag agggctgttt tgaacacaac      1020
     ttcctcctag gaacagccat ggatgatgcc cgccgaaatg ggaaagaaat agcaatagcc      1080
     tggctggatc tcgcagatgc ttttggatct gtgccgcaca aacacatcat ccgcaccctt      1140
     caagatatgg agatgcccaa cagcattata agactcatct gcaacattta cgagggagtt      1200
     accactaaga ttgaggcaaa ggatggcact acagatccaa tccccatatc gagtggagtc      1260
     cgacaagggg atccgctttc tcctctctta ttcaatttag cattggaacc acttctgagg      1320
     accgctctca gcaaaggaat gactgctggc taccagctag gaaaggaaaa acttgtcata      1380
     ctagcttacg ctgatgatat agtactgatg gccaaaagtg caggagcact acaccaaatc      1440
     ctccactcag taagcacagc agcaacctgg agcggcctca gctttaagcc aagaaaatgc      1500
     gcatcgctcc acctagattg caccaagggg cgtcgccagc tgctaccctc ctcctttgac      1560
     atccagggaa gagcaatgag gacccttaag gaaggagaat catataaata ccttggagcc      1620
     ccactagggt ggcatgtaac tgccacgccc acggaagcca ttgccactct taaggatgaa      1680
     ataagagcaa tcagcaatag caaccttgct ccatggcaga aactagatgc cacaagaacg      1740
     tttctcctgc caaaactaga ataccctatg aggatatccg attttccaaa aggagccctt      1800
     aacgaactag agaaacaact ttatacagcg ggccgcagct ggatgtggct ccctcaaagg      1860
     tccagtaggg aagcactgca tctccctccc catcttggcg gaggaggtct ctttccaccc      1920
     tcagtcctga aagatatcct gacagtcgct catggattta aaatgctgac atgtgcagac      1980
     cccttaacga aaggaattgc ttgggagtcg ttgagagata gactccacaa aaaattggaa      2040
     ggagaaccca gatcccaaca aatactgccc tcatggaata cctctcaggc tccatggaga      2100
     atcgcctcgg agctaacgtt ggagatgcag catccttctg gacaagagtg cggaaggcaa      2160
     ctcgcaccct ccgcccacac tccgcagcat cttgggaatg gagcgattcc aggcaggagg      2220
     tctctctcag actccagcat ccatcaccag cagcagagac cctcattctc ccacagacac      2280
     atcgaaggaa agcagtacct ttactaaaga aagcagcaga agaaggatgg cgccgtgcct      2340
     tggtccagaa aaaagaccaa ggaaaagtcc cagatgcagt atcactccac cctgccagct      2400
     cccatttcat tagagaagga agaaacaccc gcttctgcga ctggcgattt gtacatcggg      2460
     cacgcctgaa tgtgctccct ctgaatggag caaggcatgg caatcaacga ggggactcaa      2520
     gatgccgccg atgcggagca tgggatgaaa ctctccctca tgtacttaac cactgtgcca      2580
     gccactcaga cggctggacc agaaggcata atgaaattca aaatatttta attaatgcat      2640
     ttccttctac tcatagagtg cagatcgacc gccgcatacc tgaggatgaa tcactccttc      2700
     ggccagacat actggtttca gagggaccac aaggtccata ccacatcatt gacgtaacag      2760
     taccattcga gaaccgccga gatgccctag gcaaggcgag agaaggaaaa atctcaaagt      2820
     atatggagct ggcagagaga cttcgagtac gacaccgata ccaggtagat gtctttttgg      2880
     atgcgctggt cgttggggct ttaggctcat gggatccagc aaatgatcga gtcttacaaa      2940
     acctccggat accagatagg aaaattccag cactgaggag gaaaatggtc tctattgcaa      3000
     ttaaatggtc cagagatatt tacgtagaac atataactgg ggatcgacag tacaaggcca      3060
     cccctgctga cacaggacca gatggagaac ccttaggaga ccccctggag agagacaccc      3120
     aa                                                                     3122
//
ID   UVIR_DV     repbase;    DNA;    INV; 6565 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   Drosophila virilis Uvir non-LTR retrotransposon, a consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; gag domain;
KW   HeT-A; UVIR_DV.
XX
NM   UVIR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   virilis group.
XX
RN   [1]
RA   Casacuberta E. and Pardue L.M.;
RT   "HeT-A elements in Drosophila virilis: Retrotransposon telomeres
RT   are conserved across the Drosophila genus.";
RL   Proc. Natl. Acad. Sci. U.S.A 100(24), 14091-14096 (2003).
XX
RN   [2]
RA   Gentles A. and Jurka J.;
RT   "Uvir non-LTR retrotransposon.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1232..3904
FT                 /product="UVIR_DV_1p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MIGLRIGIWHANGLSNKTDELEQFIIRHNVDLMLISE
FT                 TRFNFNSRVQIPGYSIITANSPQTHLCIGGAAILISNHIEYQALPGISLPQ
FT                 LQCAIVRLRTDLGGANIASCYWPPNHAVLADDYVCLFNQLGENFLIGGDWN
FT                 AKHRLWGNMRRCPRGSILANILMDSNKYNVLTTAEPTHFPSNSNRPSVLDF
FT                 GIYAGISSHRLAISRVTELHSDHLPLLVQLKITINGQSLWNNPNLIHRSRP
FT                 RRRNRHRLLTERSNLEIFHQKLESSINLNIEIDCINDIDDMLENFMSKLHI
FT                 AAEASNSRSAMASIIPPHQNSSNNTLNNENNNNVNLDLSSPQPLPLSAFIR
FT                 TDEHRELMRLKRRLRKRWARTRQLDHWLEWQRVGRQLANQLEQQRRDYVDY
FT                 VLSNADPQKKGAFNLWHATKYLKRQPHAQPSVRNLNGHWCQSAEEQAEAFA
FT                 DELQARFTPFNLAPSGQCERVKRTLNQQVNLYDNTLNAINPQYPILSSHIR
FT                 HVTLCELNTYIGHLQMRKAPGLDQIDNYLIRSLPQKARLFLLLLFNGMLRL
FT                 RYFPSAWKCAAVRMILKSGNRSAANLNSYRPISLLSTISKLFEKVIYERLN
FT                 DELQSPLESESELECSRVIPNHQFGFRSGHGTIQQVHRIVEHINNSFERGH
FT                 CTSGAFLDLQQAFDRVWHDGLLFKLRTHTSEPLYQLLKSFLSNRSFCVLST
FT                 NPTTNGNRGADACHSTLRPMVAGVPQGSVLAPLLFNIFVSDMPCIATHIQQ
FT                 VFQPPPGQTNTSIIGLTATYADDTAFLCSAMNAVVATTILQGHMHRFVKWA
FT                 NNWNIQINDNKSVHIIFTLRRQIANAGSLTTQLTINNNIIPAKSYVKYLGL
FT                 NLDKKLNWARHARLQHKLCAKNCSNTNGYYLPANPDYH"
XX
SQ   Sequence 6565 BP; 2168 A; 1674 C; 1039 G; 1678 T; 6 other;
     aaatcaataa attgctatag ctatatatat tttcaattac ttattaaata tacatatata        60
     cctagcatat atattgctac aaactgtccg tctacggaca atcataccct cttagctaaa       120
     aagagagcaa tttaatcaaa aatwtattac ytataaataa aataatacat aatcaaaaat       180
     aacaattaac ccttcaaatc tataaaaaca aggtattaca tcaacttttg ccataaaact       240
     tcaagcccaa aggtgaccaa tcaaattaac ctaaaaattt ctagcaattt ccagcaaaag       300
     tgttgtgcca atatatgaca tgtgtgtgtg tgggcaattg ttctgrtttt tctttgcaca       360
     cctatacaat cgctaaaata gytgctgtcg cgcaacttga cacacacacg catacacaca       420
     cttattacak ttcataaatt acacatatat acatctatca aaacatatac atatatactt       480
     tcacatacat atctacaact cctgtcaaaa cacatatata aacaaayata tatatctaca       540
     gcaaacacat acaaactcac ttatatacat tacttcccct cttttttgac gtccatataa       600
     gtgacgcgcg catagaaacc tgacgaagct gagagcaggc gcaaccgtag ctagtcgact       660
     ttctggtttg tgaattgact aaatcggtca acttggtgcg aaaccaaaag cacacactca       720
     caaacaaatc acaacaaagc gccatttagt cgtttcatcc acccatcgcc attttgcact       780
     tttcctattt catacaaact caacctttgc ataaaccaac aaagagctca agcttttaca       840
     cgtccccttt gtaggctgct cttaattttt cgtaaaggtt gacacaaaca aaatcaaaac       900
     tggtgcttca tcaccaataa actaaataaa ttaaaactaa atacttacct taatcaaacc       960
     tattaaaaaa ttgaagctta atcaggtgtg tcgccaccaa caatatttaa gctacaatca      1020
     cacatacact tacttatact taccttatca caccttctca tatacttacc tatacttacc      1080
     attatcacac cttcatatta catatattca tactcacctc atcacacctt catatctttt      1140
     atatttacgc cctataaata taaatttaat ctctttctgg tgtaccatca ccaaaaacca      1200
     tactttactt accttcacac aaactgctcg catgattggc ctccgtattg gcatttggca      1260
     tgccaatggt ttgtcaaaca aaactgacga gctagagcaa tttataatac gtcataatgt      1320
     cgatctaatg cttataagcg agactcgctt caacttcaac tctcgtgtcc aaatccctgg      1380
     atactccatc ataacggcca actcacccca aactcactta tgcattggtg gtgcagccat      1440
     cctaatctca aaccacatcg aatatcaagc tcttccaggc atatcactgc cacaattaca      1500
     atgtgctatt gtgcgcctcc gtacagatct gggtggtgcc aacattgcgt cctgctactg      1560
     gccccccaat cacgcagtct tagcagacga ctatgtctgc ttatttaacc aattgggtga      1620
     aaactttctg attggagggg attggaatgc caagcatcgc ctctggggca acatgcgacg      1680
     ttgtcctcgt ggctcgatcc ttgcaaacat tctaatggac tccaacaaat ataacgtact      1740
     cacaacggct gagccaacac acttcccatc taatagcaat cgtccaagtg tactcgactt      1800
     tggcatctat gcaggtatct cgagtcatag gcttgccata agtcgagtca cagagctcca      1860
     tagcgaccat ctgcccttgc tagtccaact caaaatcacc attaacggtc aaagtctatg      1920
     gaataatcct aacctaattc atcggtcacg cccccgccgg cgaaaccgtc accgtctact      1980
     caccgaacgc tcaaacctgg agatttttca tcaaaaattg gaatcatcca tcaatctcaa      2040
     tattgagatt gattgtataa atgacatcga tgatatgctc gaaaatttta tgtccaagct      2100
     gcacattgca gccgaagcgt caaattctcg atcagccatg gcatccatta tacccccgca      2160
     tcaaaacagc tccaataaca cactcaataa cgaaaacaat aacaatgtca atctcgactt      2220
     atcgtcacct caaccattac cactgtccgc ttttatcaga acagacgaac atcgcgaatt      2280
     gatgcgacta aaacgccgtc tccgtaaacg ctgggcacgc acgcgtcaac ttgatcactg      2340
     gcttgaatgg cagcgggttg gccgacaact ggccaaccag cttgaacaac aacgccgtga      2400
     ttacgttgac tacgtgctga gcaatgcaga ccctcaaaag aagggcgcct tcaacctgtg      2460
     gcatgccaca aaatatttaa aacgacaacc ccatgctcaa cccagtgttc gcaacctcaa      2520
     cggtcactgg tgccagtctg ccgaagagca ggctgaagca tttgccgatg agctacaagc      2580
     acgtttcaca ccattcaacc ttgccccatc aggacaatgc gaacgtgtga agcgcacact      2640
     caatcaacaa gtcaacttat atgacaacac tctaaacgca atcaatcctc aatatcccat      2700
     tctatcatca cacatacgcc atgtaacact atgcgagcta aatacttaca ttgggcatct      2760
     acaaatgcgt aaagcaccgg ggctcgatca aattgataac tatttgatca ggtccttgcc      2820
     tcaaaaagcc agacttttct tgttgctact attcaatggc atgcttcgac tacggtattt      2880
     tccatcagca tggaaatgtg ccgccgtccg gatgatattg aaaagtggca atcggtcagc      2940
     tgcaaacctc aactcttacc ggccaataag cctattatct acgatctcga aactatttga      3000
     gaaagtgata tatgagcggc taaatgacga attacaatct ccactagaga gcgaatctga      3060
     attagagtgc tccagagtga tcccgaacca tcaattcggt ttccgctctg gtcacggcac      3120
     catccaacaa gtgcatcgga ttgtcgagca cataaacaac tcatttgaaa ggggccactg      3180
     cacctcggga gcttttctcg atctgcagca agcttttgat cgtgtctggc atgacggttt      3240
     actattcaaa ctgcgcacac acacgagtga acccctctat caattactca aatcattcct      3300
     atcaaatcgt agtttctgtg tattaagcac aaatccgaca acaaatggca acagaggtgc      3360
     cgacgcctgc cactcgacac tacgaccaat ggtggccggt gtgccgcagg gcagcgtgct      3420
     ggctccacta ttattcaata tattcgtctc agacatgcca tgcattgcta cgcacataca      3480
     acaagtgttc caaccgccgc ccggccaaac aaacaccagc ataattggtc taacagccac      3540
     ctacgccgat gacacagcat tcttatgcag tgccatgaac gcagtggtgg ccaccaccat      3600
     tctgcagggt catatgcatc gatttgttaa atgggccaat aactggaaca ttcaaatcaa      3660
     tgacaacaaa tcggtgcata ttatctttac cctaaggcgc cagattgcca atgctggcag      3720
     cctaacaaca caactaacaa taaacaacaa tatcataccg gccaagagct atgtcaaata      3780
     tctgggtctg aatttggaca aaaaattaaa ttgggcacgt catgcccgtt tacagcacaa      3840
     attgtgcgca aaaaactgtt caaacacaaa tggctactat ctgccagcca atccagatta      3900
     tcattaaaaa acaaattgct tatttatcga cagatcatag cccccacctg gcactacggc      3960
     atttgaactc tatggctgtg cagctgacac gcatctgcgc cgtctacaaa ctgcacagtc      4020
     gcgagctctt cgcctcatta gcggtgcacc atattatatt acaaatcgca cactgcaccg      4080
     agtaatgaaa gtgccatcaa tatgggacca gctcaatcta aacgccagtc ggcacaacga      4140
     ccgactggaa aaacacacta acaaaatggc tagcacgcta ttgctttcag gtggacaccg      4200
     agcccaacgc cgtctccgac gtatctggcc aggcattgaa ttaattcaac gccaagcgcc      4260
     cgccaacctt ttttaaataa ctacactaat aatcaaaaat gtgacacccc tcatgggaca      4320
     cacattcacc cacgaaaaat actttttcca aacatcataa ataaacactt tagtttaggt      4380
     aactcactca ccttatccca tggcgagccc ataagaaaca cttgtcacat ggattcaaaa      4440
     taacggcaaa tatattatgc cgcaattatt tttgatgaca gccgctaagc cgcagctaat      4500
     gacaacaaga aacagcagca gaagaagaag cagcggctaa aacagcagca gaagcattgg      4560
     tagcagacga agacaaaacg gcagcagaat gcaacagcta catcaacatc aactataagc      4620
     acgcccaaat aaccatacca atacaatcaa atcagaaatt acacatgtaa tatacacaat      4680
     cacattcata ccaaatataa tacaaaaata atacattctc aatcagctgt aatacacaca      4740
     ctcacaatac tcacataagc tataatacac ctattagata aaatacacat atttactcta      4800
     acactggcat acacatatgc tcacactcga atcaaacaaa aaaccaaatt ttactcactc      4860
     atcaaaaaag acaatgaata tcaggtaaag ttatatcacc cgattcccct cccccaccca      4920
     caaatcataa tgccgattgc tggcggcaac caaattactg ccgcgagaga aggcatttca      4980
     aaaacggcct gctgcctagc tacaaatata tatatatata tgcgtactca tacacatata      5040
     tgtacatatt ctaaaaataa tcccctttat cccaccaaaa caattgataa cgcagtggca      5100
     atgtcaatgt gtcaaaattg catagtctac gaatgatgac agcagtatca atttttgcta      5160
     aaaactaatt aatatgctga atacatctgg agacaatttg cacgcacaca cacaaatccg      5220
     ctcgcatcaa tatactccca catatcacaa caaatttaca tctcacaaca ttctagcaaa      5280
     tataaacaat taatttctct caaacataca ttcttacaaa aaagatactc tatcaaaact      5340
     gctggcttat ggcgaactag ttttgctgat gccgcacttt caccctaaat tatatattac      5400
     actaaacaat aatcataaat aatcttaaca aaaactctac cacatcaagc ccatacaaaa      5460
     aatatggagc attcacttga agacgtgtgc aatcgcgaca aatgaattat tcactaagtc      5520
     agttcggcca cttaataccc atatgtatac tcatttgtct atactgcgca cacacacact      5580
     ctcttcacaa cttatgccaa attacacaca accaccacaa aatataactt tataacactt      5640
     tcaaatcaaa acctcatgca cacatataca cataaaaatt gtatagctta agaaatactt      5700
     tttaagaaat caaaatttat aacgttatgc acaaatagta atatataatt ttaaagtcaa      5760
     taaactctgg aggggggatt ggttcggtgt gtgacggtgg gaagggggat acttcgtacc      5820
     gctacaggat agtggcctgt gtgtgggtgt gcatacccgt gatggttgga gcggttgacg      5880
     agcatgagct agtaggcacc tttaatgctg cctcgccatg tctcgagccc tccaggccac      5940
     cacgaccatg catactcaaa cactcgctcg ctctctgtgc gatgcgaatg ctcgatgccc      6000
     gacgctcggt actcggtact cggtacacga tgctcggtgt cctcgatccc gtttcccatt      6060
     cgtctcatcc gacccggtct cctgctcaac ctaaaacaga aaaaattgag tctctttttg      6120
     gtgcctgaag tgaacggacg tgctcgcgga gaaataaaaa gtaaaaatca tataaattcg      6180
     gcagcgcgcg ccaaaacgaa ccgaacatag tatataggga cacgattgca aagtgcaaat      6240
     tgcaatacat atccctcggt tttttcattc ggtttttcac tcgctcaata cagtggcttt      6300
     tttttccttg tacatatata tagtgcacgt ggcctgctgt gacttttgca caaagtgtcg      6360
     ccacgtggac aatctagaac ttttgcttta gttgttctgc tgcgcatcag acgctggcgc      6420
     acggcgtgca aaaacacaaa agtgggttat gtataacaaa tacataactg cctagtgcct      6480
     tatatgtact aaaattaacc actataactc atactctcgt caataaatca ataataattg      6540
     atataaccta aaataaaatt acata                                            6565
//
ID   Uxumo       repbase;    DNA;    INV; 7743 BP.
XX
AC   .
XX
DT   28-NOV-2021 (Rel. 26.12, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Uxumo.
XX
OS   Drosophila erecta
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7743
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-597, and
CC   7147-7743). 9 amino acids of ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1272..2615
FT                 /product="Uxumo_1p"
FT                 /translation="MNWEYREVKQEVVSDDSEEIGFCPAVRQPDESELNAE
FT                 MVQALITNAVNAELTAQEQRWRAEIESVRNQVSSLTVQAPQVEVYERVTPD
FT                 PSIKCDVKLDIVKSLPTFSGSHDEYVSWRQAASDAYEVFKRYKGSEAHYEA
FT                 VVIIKNKICGNARALLTSHNTVLNFDAILARLDCTYADKTSLRVLRQNLEM
FT                 VQQRDADLMAYYDEVERKLTLVTNKIVMSHNADTATILNKEVRDDALHAFI
FT                 AGLKRPLKALVLPAQPKDLTTALALAREAENSIERSAFAASYAKAIEDKAL
FT                 VHDGNRRNNKFQGKQWKGEDKNPHFIPKQFQSKPQENSPWQKRGDPEIVDH
FT                 NKVQPMEIDPSTAKLRQETNWGKPQDNSNNKRRNSSQRYSGQRRQRVNNIT
FT                 QSHEQEEAGYTLLCEAEVASIKEGNDSDELRDLLHFLGNAPDCRSSNDSWL
FT                 VEH"
FT   CDS           5879..7168
FT                 /product="Uxumo_3p"
FT                 /translation="MLELFPQSHMRKLLEVDINHAQNMLDEITVHRRMARS
FT                 LDFLGSALNVVAGTPDAEDLFRIKTNEAALIEANNRQVVINTETQKHINQL
FT                 TDTVNRILKEKRDGLVDAGHLFETLLTRNRILISEIQNCMLTITLAKNNMI
FT                 NPVIFNHNDLKSIFDEQLTEVPIVSLMDVSKIKIFQSNIFIHVIVQYPKVK
FT                 FICKKVLLFPVAHHHTMLQIEENVLAECDDGVLAVSDCASTNLATFCKKAA
FT                 HDTCARQLHAGGGRWLHTQPSNLGPLTIVDDGLIMVNEKVTRITIDDGPTT
FT                 TVIGTHLITFERKAVINGSVYLNLNYAVDKSPGIAASPLINITGHDQILSL
FT                 PLLQRMNEHNLRLMQELREDVSAGGAPKIWFVAGVAVSFTLCGLVLLQQHC
FT                 RRKREASQLQKSIDELAVTEDGVQFKGGVVNNGLPG"
FT   CDS           join(2546..3679,3683..5635)
FT                 /product="Uxumo_2p"
FT                 /translation="RSVTFFRERSRLPFIERQLAGRTLKILIDTGAAKNYL
FT                 RPVKELRNVMPVETPFTVSSIHGSSDVKNKCIMRIFGLDAPFFLLDTLSTF
FT                 EASVLINSLTRAGVALNLGDSVIKYANVTEKLKFFDCENVNFTKIDDIVVP
FT                 NSVKAEFKNVILKRIKVFSTSNEALTFNTSVTATIRTKSDEPVYSKLYPYP
FT                 MGAADFVNNEIKELLSNGIIRPSRSPYNSPAWVVDKKGTDDNGIKNKRLVI
FT                 DFRKLNEQTIADRYPMPSIPMILANFGKALDLRSGYHQIYLAEKDREKTSF
FT                 SVNGGKYEFCRLPFGLKNAGSIFQRAIDDVLREEIGKICYVYVDDVIIFSE
FT                 NETEHVKHIDIVLKRLLEPNMKVAREKTKFFKESVFLGFIVTRGGTKTDPE
FT                 KVRAIQEFPEPKNLFSLRSFLGLASYYRSFVKNFASIARPLTHILKGENGT
FT                 VSKNMSKKVPVTFDETQRNAFDHLRNILASEDVILTYPDFKLPFDLTTDAS
FT                 GSGIGAVLSQNKRPITMISRTLKDCELNYATNERELLAIVWAIGKLQNYLY
FT                 GTKEVRIFTDHQPLTYAVSEKNTNAKIKRWKAFIDENNGKIFYTPGKQNLV
FT                 ADALSRQPLNNLEAEAQSDAATVHSELSLSYTIETTDKPLNCFRNQIILEE
FT                 ANQPLRRDFIIFGNRTRHIINFNDKDSLVESVKEIVNANVVNAIHCDFPTL
FT                 ARIQHALRQEFPATRFWHCKAFVSDITNVNEQLEITNTEHNRAHRAAQENA
FT                 KQILRDYYFPNMSKLASEVVANCKVCNKAKYDRHPKKQELGNTPIPSYVGE
FT                 MLHIDIFSTDRKIFLTCIDKLSKFAIVQPLVSRAIIDVRAPILQLVNFYPN
FT                 IKTIYCDNEASFNSETITSLLKNQYSIDVVNAPPLHSSSNGQIERFHSTLA
FT                 EIARCLKIDKKIEDTVELISRATIEYNRSLHSVTKFRPVEVIHAGNDEIML
FT                 AIKDRIDKAQQASLDRINPSRQNLVFEVGEKVHLRNNKRLGNKLTPLYSEE
FT                 RVEADLGTSVLIRGRVVHKDNIK"
XX
SQ   Sequence 7743 BP; 2392 A; 1830 C; 1623 G; 1898 T; 0 other;
     agttaacaac ggactcccag gttagcatca gcaggcctat ttttattcct cctattgcta        60
     ttaatcattt tattacccat aatttattaa tattaagcat ttaatattat aattattact       120
     ccactcatgt atggtccacc ccaaattggg tccaccctaa ttgggccgag agctgagcca       180
     acatattgcg cccttatggg ccgtggcttt gtcccattgg ctagcagcga tcatatgact       240
     tctgcaaaat gcgcttggtc agcggtctgc cacgggtatc cggtcatgca tgagcttttg       300
     ttagttctta agttcagttc tgattttata ttcaattaat aaagagcaca agctcatata       360
     tcgaaactcc ggcacctagc cgttaaatct ttttattacc aaatataccg gctgagtctc       420
     taggccagcg gtattgaagg acagtctcct tccaacctaa tcatcctatt tcatcataga       480
     aacaggacgg ccaaccggcc cctcactgga caactagcga cagccaaccg gctatctaca       540
     ctgggagaca gcggcgaggg atatactatt gccaaccgcc cacaccatct tataactgac       600
     gcccaactac tcttcgaacc taccctgaag atcataaaat gtaagtgact gtgagactaa       660
     gatagcacca ggtcataata ctgtaataaa cgaataaata aagtgtgcct gtgagttctg       720
     catacctcgc cagtaaaaat tccgtacagt gaaaaatccc gatatatata tttctttgca       780
     tttttgtgtg gcgattatgc cccgcacctt tcctctggag tactctgtga atttacttaa       840
     tttgcatgtg tctaatttta aataaaaaaa aacgtagaaa ttttgttccc agtatatctg       900
     tgtgtttgct aagcctgtgc ttcgctccaa ccatttccca actggaattt ttcttgggat       960
     gtataactca gcgtttttat tgtgatgttt tctcgaattt tctgtgactc cactctctgt      1020
     gcagcaactc cagcaaacga ttgctatgtt ttacacatat aaattctgcg ggtttattat      1080
     tatattttct ctcaaatttg ttatacttcg cccactgtgt tgtgactcct ctaaaatatt      1140
     gtacatcgtc gccagaccct gacttagcta caagtgttgg ccaactaaaa gcggtgcacg      1200
     aaacgcaaat tttaccttta ttcgccaccc atattactgc caactaattc actcagcttc      1260
     atttacggcc gatgaattgg gaatataggg aagtgaagca agaagtagtc agtgacgata      1320
     gtgaagaaat cggattttgc cccgcagtga gacaaccaga cgaatcagaa ttgaatgcag      1380
     aaatggtcca agcgctcata acaaatgccg tcaacgccga gctaaccgca caggagcagc      1440
     gctggcgggc agaaattgaa tcagttagaa accaggtcag ctcgttaact gtgcaggcac      1500
     cccaagtaga agtttatgaa agggtaacgc cagaccccag cataaagtgt gatgtcaagt      1560
     tagatattgt gaaatcgctc ccaaccttta gcggcagcca cgatgaatac gtgtcttgga      1620
     ggcaggccgc atcagatgcg tacgaggtat tcaagagata taagggcagc gaggcccact      1680
     atgaagcagt ggtaattatt aaaaacaaaa tttgtggtaa cgcgcgagcg ctcctcacgt      1740
     cacataatac tgtgctaaat ttcgatgcaa ttctggctag gctggactgc acatacgcgg      1800
     acaaaacgtc cctacgagtt ttacgtcaaa atctcgagat ggttcaacaa cgtgatgccg      1860
     atcttatggc atactatgac gaagtcgaga ggaaactcac tctcgtcacg aataaaatag      1920
     ttatgtcaca taatgcggac acggcaacta tcttaaataa ggaggttagg gacgatgccc      1980
     tacacgcatt tattgctggg ctgaaaagac cgctcaaagc actggtgcta ccagcacaac      2040
     caaaagacct tacgactgcg ttagcgcttg cgcgggaggc tgaaaatagc attgaaagaa      2100
     gtgcattcgc ggcgtcatac gcgaaggcca tcgaagacaa ggcccttgtg cacgatggta      2160
     acaggcgtaa taataaattt cagggaaagc aatggaaagg agaggataaa aatccacact      2220
     tcattcctaa gcaattccaa agcaagcccc aagagaacag cccctggcag aagcgcgggg      2280
     accccgaaat tgtagaccat aacaaagtac agcctatgga gatcgaccct tcgacagcca      2340
     aacttaggca ggaaacaaat tggggaaagc ctcaggataa tagcaacaac aaaagacgga      2400
     attcatctca gcgttattca ggacaaagac gccagcgtgt caataatata actcaatccc      2460
     acgagcagga agaggcaggg tacacactgc tttgtgaagc ggaagtcgcc agcattaaag      2520
     aaggtaacga ctccgacgaa cttagagatc tgttacattt tttagggaac gctcccgact      2580
     gccgttcatc gaacgacagt tggctggtag aacactaaaa atacttatcg acacgggggc      2640
     ggcaaagaat taccttaggc ccgtaaagga gctaagaaat gtaatgccgg tcgagacccc      2700
     ctttactgtg agctctattc acggctccag tgacgtcaag aacaagtgca taatgcgcat      2760
     ttttgggtta gacgccccat ttttcctgtt ggacacactg agcacgttcg aagcttcggt      2820
     gctaattaac tcgctaacgc gagcaggagt agcattgaac ttaggcgaca gcgtaataaa      2880
     atacgcaaac gtcactgaaa agctcaaatt ctttgactgt gaaaacgtta atttcactaa      2940
     aattgatgac atagtggtac caaattcggt gaaagccgaa tttaaaaatg ttattctgaa      3000
     aagaataaag gtgttttcga cctctaacga ggcgctaact ttcaacacct cggtcaccgc      3060
     cactattcga actaagagtg acgaacccgt ctactccaaa ttatacccct accccatggg      3120
     ggcagcagac tttgttaaca acgagatcaa agagctgctg agcaatggca taataaggcc      3180
     ttccagatcc ccatacaaca gccctgcatg ggtagttgac aaaaaaggga ctgacgataa      3240
     cggcatcaaa aataagcgct tggtaatcga ctttaggaaa ctaaatgaac aaacaattgc      3300
     tgaccgctac cctatgccaa gcattcccat gattttagcg aactttggaa aagccctaga      3360
     cttaaggtca gggtatcacc agatatactt ggccgagaag gaccgggaaa aaacctcttt      3420
     ctcagttaac ggagggaaat acgagttttg ccgattacct ttcggattaa aaaacgcagg      3480
     tagcatattc caaagagcca tcgatgatgt gctgagggaa gaaataggca agatatgtta      3540
     cgtctatgtc gatgacgtca ttatattttc agaaaacgaa accgaacatg ttaagcacat      3600
     cgatatagtg cttaagcgac tactcgagcc caacatgaag gtggcacgag aaaagaccaa      3660
     attctttaaa gaaagcgtat aattcttagg cttcatagtc actagggggg gaacgaaaac      3720
     agaccctgaa aaagtcaggg caatacaaga gttccccgaa cccaaaaatc tgtttagcct      3780
     taggtccttc ctcggcctgg cgagctatta cagaagcttt gtgaagaatt ttgcctccat      3840
     tgccaggcct ctcactcata ttctcaaagg ggaaaacggt acagtgagta aaaacatgtc      3900
     gaaaaaagtt cctgttacat ttgatgaaac ccagcgcaat gcgtttgatc acctgcgtaa      3960
     catcctagca tcagaagatg tcattttgac gtaccccgat ttcaaattac catttgacct      4020
     aaccaccgac gcttcaggca gtggtatagg cgcggtattg tcccagaaca agaggcccat      4080
     caccatgatc tctcgtacac tgaaagactg cgaactgaac tacgccacca acgaaagaga      4140
     attgttggcg atagtctggg caataggcaa acttcaaaat tacctatacg gtaccaaaga      4200
     ggtaaggatc tttacagatc accagcccct cacatacgcg gtatccgaga aaaacaccaa      4260
     cgctaagatt aagcgatgga aagcatttat tgatgagaac aacgggaaaa tattttacac      4320
     accgggaaaa caaaacctgg tagcggacgc attatctcga caacccctga acaacttaga      4380
     ggccgaggcc cagtccgatg cagccacggt gcatagtgag ctttcccttt cgtacactat      4440
     agaaaccaca gacaaacctc tgaattgctt cagaaaccaa atcattttgg aagaagcaaa      4500
     ccaaccgctt cggcgagact tcataatctt cggaaataga actcgccata tcattaactt      4560
     taatgacaaa gactcgcttg tagaatccgt taaagaaatt gtcaacgcca atgtcgtgaa      4620
     cgcgattcac tgtgatttcc ctaccctggc gcgtattcaa catgccttga ggcaggagtt      4680
     tcctgcgaca aggttttggc attgtaaagc cttcgtcagc gatattacca acgtcaatga      4740
     acagcttgaa atcactaaca ctgagcacaa tcgcgcccat cgggctgcac aagagaacgc      4800
     taaacaaatc ctccgggatt attacttccc gaatatgtct aaactagcta gcgaagtggt      4860
     cgcaaattgc aaagtctgca ataaagccaa atacgaccgc catcctaaga aacaggaatt      4920
     agggaatacc ccaatacctt catacgttgg agaaatgttg catatcgaca tattttccac      4980
     tgacagaaaa atcttcttaa cctgtattga caaattgtcc aaattcgcca tcgtacaacc      5040
     cttagtttct agggcaatca tcgatgtacg agcccctatt ctccaattgg taaacttcta      5100
     cccaaatatc aaaaccatat attgcgacaa cgaagcctct ttcaactctg agacaatcac      5160
     gtcgttgctt aaaaaccaat acagcatcga tgttgtcaat gcaccaccgc tacacagtag      5220
     ctccaatggc caaattgaaa ggtttcacag tacactggca gaaatcgcca gatgcctcaa      5280
     aattgataaa aaaatagagg atactgtgga actgatctca cgggctacga tagaatacaa      5340
     caggtcgcta cattcggtca caaagtttag accagtggag gttatccacg ctggcaatga      5400
     cgagatcatg ttggcaatca aagatagaat tgacaaggca caacaagcta gcctggacag      5460
     aattaaccct tctagacaaa acctagtctt tgaagttggt gaaaaagtac acctacgtaa      5520
     caacaaaagg ttaggtaaca aattgactcc gctttattca gaagagcgtg tggaagcaga      5580
     tctgggaaca tctgttctca ttagggggag ggtggtccat aaggacaata tcaaataggc      5640
     atttcatctg ccacattcac ccttatatta aacactcacc aaatgctata atttccacag      5700
     gctttccgta atatccatca tatttctaac caccgcaagc gcgcgagtca ccgacttctc      5760
     gcatgcaaaa tacatcccgg tgttagacgg gaatgtatta gtatgggaac agtatggcct      5820
     gattaggcac tcgacaaatc tgtctgagtt ttttagcata attgactcta cagtcaaaat      5880
     gcttgaactg ttcccacagt cccacatgag gaaacttctg gaagtcgaca tcaaccatgc      5940
     ccagaacatg ctggatgaaa ttaccgtgca ccgtagaatg gccaggagcc tggatttcct      6000
     gggctcggca ctcaatgtcg tggcgggcac gcccgacgcg gaggacctct ttagaatcaa      6060
     aactaacgaa gcagccctaa tagaggcaaa caataggcag gtagtaataa acacagaaac      6120
     acaaaaacat attaaccaac tcacagacac agtaaacaga atcctcaagg agaaaaggga      6180
     cgggttggtt gacgccggcc accttttcga gaccctctta accagaaata gaatactaat      6240
     ttcagaaata caaaattgca tgctcacgat cacactcgca aaaaacaata tgataaatcc      6300
     agttattttt aatcacaatg accttaaatc tatcttcgac gaacagctca cagaggtccc      6360
     catagttagt cttatggatg tatctaagat taagattttt caatctaata tttttatcca      6420
     tgtaattgtt caatatccta aagttaagtt tatttgtaaa aaagtcctgc tctttcctgt      6480
     tgctcaccac cataccatgt tacaaattga agaaaacgtc ttggcggaat gtgatgacgg      6540
     agtcttagca gtttcggatt gcgcgtctac caacttggcc acgttctgca aaaaggcggc      6600
     tcacgacacc tgcgccaggc agttacatgc cggcggtggc cggtggctac atacgcagcc      6660
     cagcaatcta gggcccctta caatcgtgga cgatggacta ataatggtca atgagaaagt      6720
     tacgaggatt actatcgatg acgggcctac aacaaccgta atagggaccc accttattac      6780
     cttcgaacgg aaggcagtca tcaacggctc agtgtatttg aacctcaatt acgctgtgga      6840
     taagagccct ggaatcgcgg cctccccatt aatcaacatc accggacatg atcaaatatt      6900
     gagtctgccg ctactacagc ggatgaacga gcacaacttg cggctgatgc aggagctcag      6960
     agaggacgtg tccgcgggag gtgcaccaaa aatctggttc gtcgcgggag tcgccgttag      7020
     cttcacgtta tgcggcttag tcctgctgca acaacactgc aggcgcaaac gggaggcatc      7080
     ccagttgcaa aaatccattg acgaattggc tgtcaccgag gacggcgtcc aatttaaggg      7140
     gggagtagtt aacaacggac tcccaggtta gcatcagcag gcctattttt attcctccta      7200
     ttgctattaa tcattttatt acccataatt tattaatatt aagcatttaa tattataatt      7260
     attactccac tcatgtatgg tccaccccaa attgggtcca ccctaattgg gccgagagct      7320
     gagccaacat attgcgccct tatgggccgt ggctttgtcc cattggctag cagcgatcat      7380
     atgacttctg caaaatgcgc ttggtcagcg gtctgccacg ggtatccggt catgcatgag      7440
     cttttgttag ttcttaagtt cagttctgat tttatattca attaataaag agcacaagct      7500
     catatatcga aactccggca cctagccgtt aaatcttttt attaccaaat ataccggctg      7560
     agtctctagg ccagcggtat tgaaggacag tctccttcca acctaatcat cctatttcat      7620
     catagaaaca ggacggccaa ccggcccctc actggacaac tagcgacagc caaccggcta      7680
     tctacactgg gagacagcgg cgagggatat actattgcca accgcccaca ccatcttata      7740
     act                                                                    7743
//
ID   Vatovio     repbase;    DNA;    INV; 7859 BP.
XX
AC   .
XX
DT   29-NOV-2021 (Rel. 26.12, Created)
DT   29-NOV-2021 (Rel. 26.12, Last updated, Version 1)
XX
DE   LTR retrotransposon from fruit fly: full-length.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Vatovio.
XX
OS   Drosophila sechellia
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7859
RA   Zanni V., Eymery A., Coiffet M., Zytnicki M., Luyten I.,
RA   Quesneville H., Vaury C. and Jensen S.;
RT   "Distribution, evolution, and diversity of retrotransposons at
RT   the flamenco locus reflect the regulatory properties of piRNA
RT   clusters.";
RL   Proceedings of the National Academy of Sciences 110, 19842-19847
RL   (2013).
XX
DR   [1] (Consensus)
XX
CC   Including internal portion and flanking LTRs (1-516, and
CC   7331-7859). 5 amino acids of ORF3 overlaps the 3'-LTR.
XX
FH   Key           Location/Qualifiers
FT   CDS           1185..2447
FT                 /product="Vatovio_1p"
FT                 /translation="MATGGSVSTLSAGGISSASNLTVELINRLINVQLSEV
FT                 TRKLEGLEEQLTANKNEVEDYKIQTIDRTIKCETTLEVIKSLPKFTGEITQ
FT                 YVGWREAAETAMSLYKIESEQYFIALTILRNKIMGAAHDALTNHGTVLNYQ
FT                 AILSRLDFIYNDKRPIHILESELSILRQGRMTITEFYNEVNKKMTLLINKT
FT                 IMTYGKDSLITKETNKTIRSNALRIFISGLNGSISETLFSLNPPDLPNALA
FT                 KCQELESNNFRAQFANRYNGFRSENKNQGNNLRFASRQINNTPNRVNNNWS
FT                 QNGYFGANNNWNFNNNSKVQPPPEPMEVDGSIQNRPFKNYNHPRNNTNQWN
FT                 YNNNRHNFNNNFQRNNYNQYPAQKHNTSAGHVNQSETHPPIKRESTGTVNQ
FT                 PAQKTMRINNINESHFLDQHLTEECPI"
FT   CDS           2396..5413
FT                 /product="Vatovio_2p"
FT                 /translation="YQREPFFRSAPYRGMPHITRVDRKTKRQFKILIDTGA
FT                 TACYIKKGIYENKRELSIHKRVSTVHGYSIIKYYHLINIFGEQHLFYEIEG
FT                 LESDLLIGFNLLRKIGAKLDIEKGIMEYKGNKEKLQYFDEDKNDLCLIEEK
FT                 NILPLKEYIIKKYLDEQKIYKTETVNAEGSLYSLGSMNPEHASVDLSANKQ
FT                 YISLGFENPEHANVDLSANKQYISLGFKNPEQADDVNSVSLKSNSLESTNT
FT                 EHAVVEFSDKEKIHNLNIISNQIKEFENKVMNKIEKVHSKINTQIPFRTDI
FT                 RGEINTVNDRAIYSKQYPYAMSVSDFVNNEIDRMLKEQIIRPSRSPYNSPV
FT                 LVVPKKGQNEDGSPKHRLVIDYKKLNESTIPDRYPMQDPSVILSNLGKSKY
FT                 FSTIDLESGFHQILMKNSDIEKTAFSISNGKFEFLRMPFGLTNAPRIFQRA
FT                 MDDILREQVGKTCHVYMDDIIIFSNTIEQHYTDLIQIINILQQANMKISLE
FT                 KSKFFKLETAFLGYIVSHNVIKTDPEKISTIMKYPIPQNIRELRSFLGLTG
FT                 YYRKFVRNYAKIAKPLTKYLGGDNGKISRRMSTKITIQLDDPAVKAFKELK
FT                 DNLIAQVELVQPDYTKKFTLTTDASDVAIGAVLSQDNKPITFISKTLNKTE
FT                 QLYATNKKELLAIVWALKNLRNYLYGVIGIEIQTDHQSLSFTISDKNPNVE
FT                 MKRWYSFIESFTPKIIYKPGTTNVVADALSRIKINNITNSDLEQSNSDQNT
FT                 QHSAESSFENVIQETRKPLNQFQQQLLLTKGRYTIHESLNVFDKTRHIIEY
FT                 DTPENLIEILREYLKPNITVGIHCTLEDLYHIQLPLKNNFTNKFLYTKIFL
FT                 QDVENNEDKAIIIEETHSRAHRGLDENYKQINRLFYWPNLYIKLKEYIKNC
FT                 TICNENKYNRHPIKIPIGEAPIPTKEGENLHIDIYYAQSLIFLTCIDAYSK
FT                 FLVVKEIQNKLNIENKVMELLQQFPHAKVIMTDNEPSFTSAQFKSFAQDVV
FT                 "
FT   CDS           join(5900..7003,6964..7344)
FT                 /product="Vatovio_3p"
FT                 /translation="MHFVLLLITFAMITTSEIIDYSNHEFFLFKDKKDVLT
FT                 YESYADLFHVTNLSFYKEIINLESGYVRKDKNIRTQWEITYEMQIIELILS
FT                 QLIPTRSKRGIYELGTVWKWLAGTLDHDDFIKIQNKINDLIENNNQQFIIN
FT                 SKLFKEIKSLSDHFKNIFIDQELPLRKHRLRLLTFDLQNIIDTITLAKIDL
FT                 FNTKILNNEDIKEILDHEQKPVLIADLMDIAIFKIVLHKELLVIYIKYPVI
FT                 TNRCEIYYARSISHNDGKLLISNQVAKCENTFYEISNFKNELFNNYCIISK
FT                 DKTCFTRLLNGEKSICTKILEKNKNIDIIQEGAILINGNNIVNDSHLNGSY
FT                 LITFNSTTTINNIHTPIQKTKYLSTYSYTNSENKILEYITTNHFKNLEISE
FT                 YIKSNNSELSLDNINILNPFIEIYNWKISISFILLILIILYFITILIIKFR
FT                 YYIFVTKQKRPEPEKPNNDVEFLTELNERLNEINNEAGRVILEGGELSNP"
XX
SQ   Sequence 7859 BP; 3239 A; 1327 C; 1154 G; 2139 T; 0 other;
     agttatccaa cccatgaaca tagctccctt ccacagttta taaacaaatt tcaattctca        60
     aatatcgtcg gcatttcctt tgtctttgtt tttgtcattg cccttgccag cactcagcta       120
     cccgctaaca taagcaaccc aaacttaacg taaacacagc ttccgcttgg agaccaaatc       180
     acggccgact tattgcgtat caatcaaaaa ctgcatcgat cagcataatt gaatttcaca       240
     atgcagtgga aaatttccag cataaagctt ttatcgaaag ttcggtaatt ttccgaaaga       300
     aaagcttctg gccgaggttg attggatcag gacttagaat ttgaagatca gtctgaaaga       360
     gtcgggacga gatcgtcaac agctcgaagc taaatataag ctaccaataa agtgtctcgt       420
     aatagtataa gtgaaaaagt ttatcaccaa ataaatgtta aataataaaa aataaaattt       480
     atttttttaa ataaataaag agtaacaatt ttaattggcg cccaacgtgg ggcggcgtat       540
     tcaaaagttc taaataaata ttaacgatta taagttaaaa ataaaacgga actcgcgccg       600
     ccaacaatcc atatttttag tggaaaaatt aaaacatcca caacaataca acgacaccta       660
     actaatgtga aagtgatcgt gaaaaaactt aattggaaat caataaatgc aataatccaa       720
     ttaagaattt aacataaaaa ggtggactga atacttaata caaattacaa gatcataata       780
     ataataaaca taacataaac ataacataat aataaaaatt cagaactcaa cacgaaccca       840
     aagaaattca aacaaattta aaaaaaaagg ctatataaaa aattgaagga agaccccaat       900
     aaattataat caagacgacc caatcgaagg aagactccaa caaaaaatta ttaagaccaa       960
     ccaattgaag gaagacccct accctccacc aactacgctg aaggaagaac tcccacggaa      1020
     agtatcgtga gcagatagaa acaacactaa gtctttaaat aaaattcaaa aaaattaaga      1080
     ttaagacaca gagaatacta cattaaaatt aaatattaca gtatcaattt aattgaaaca      1140
     atctggaaga tttgataaat agttttgata atttaaattt aacaatggca accggaggtt      1200
     cagtatcaac tctttctgcg ggcgggatat ccagcgccag caatctgaca gtggaattaa      1260
     taaacagatt aataaatgta cagttgagtg aagtaaccag aaaacttgaa gggttagaag      1320
     agcagttaac cgctaacaaa aatgaggtag aagactataa gatccaaaca attgaccgaa      1380
     ccataaaatg cgaaactaca ttagaggtaa ttaaatcctt accaaagttc acaggtgaaa      1440
     taacccaata tgtaggctgg agagaagcgg cggaaaccgc aatgagtcta tataaaattg      1500
     aaagtgaaca atattttatc gctttaacaa ttttacgtaa taaaatcatg ggagcagcac      1560
     acgatgctct aaccaaccat ggtaccgttt taaactatca agcaattctt tctagattgg      1620
     attttatcta taacgataaa agaccaatcc atatactcga atcagaatta agcatcttaa      1680
     gacagggacg catgaccatt accgaattct acaacgaagt aaataagaaa atgacgttac      1740
     ttataaataa aactataatg acttatggaa aggacagcct tataaccaag gaaacaaata      1800
     aaacaattag gagcaacgct ctaagaattt ttatttctgg attaaacggt tcaatctcag      1860
     aaacactctt ctctcttaac ccaccagact tgccaaacgc tttggcaaag tgtcaggaat      1920
     tagagtctaa caactttaga gctcaatttg caaataggta taatggattt aggagtgaaa      1980
     acaaaaatca aggaaacaac cttagatttg cttctagaca gattaataat acaccaaata      2040
     gggtaaataa taattggtcg caaaacgggt acttcggagc gaataacaat tggaatttta      2100
     ataataattc caaagttcaa ccaccaccag aacctatgga agtagacggc tccattcaaa      2160
     atcgtccgtt taaaaattat aatcatccaa ggaataatac caaccagtgg aattataata      2220
     ataaccgaca caattttaat aataatttcc aaagaaataa ttataatcaa tacccagcgc      2280
     aaaaacataa cacaagcgca ggacatgtaa atcagtccga aacacacccc ccgataaaac      2340
     gggaatcaac gggaacagtc aaccagccag ctcaaaaaac aatgagaata aataatatca      2400
     acgagagcca ttttttagat cagcacctta cagaggaatg ccccatataa caagggtaga      2460
     cagaaaaact aaaagacaat tcaaaatatt aatagacaca ggagccaccg cgtgctatat      2520
     aaaaaagggt atttatgaga ataaaaggga attatcaata cacaaaagag tatctacagt      2580
     tcatggatat tcaatcataa aatattatca tttgataaat atatttgggg aacaacattt      2640
     attctatgaa attgagggtt tagaatctga tctattaatt ggattcaatt tgttaagaaa      2700
     gattggagct aaattagata tcgagaaagg aatcatggag tataagggaa ataaagagaa      2760
     actccaatat tttgacgagg ataaaaacga tttgtgttta attgaggaaa aaaatattct      2820
     tccattaaaa gaatatataa ttaaaaaata tttagatgag caaaagattt ataaaaccga      2880
     aacggtaaat gctgaaggca gtttatatag cttgggatca atgaatcctg agcacgccag      2940
     cgtagattta tccgctaata aacaatatat cagtttggga tttgaaaatc ctgagcacgc      3000
     caacgtagat ttatccgcta ataaacaata tatcagtttg ggatttaaaa atcctgaaca      3060
     agccgacgat gttaattccg tcagtcttaa atcaaatagc ttggaatcca caaataccga      3120
     gcacgcagtc gttgagtttt ccgacaaaga aaaaattcat aacctaaata taatttcaaa      3180
     tcaaataaaa gaatttgaaa ataaagttat gaataaaatt gaaaaggtcc attctaaaat      3240
     aaatacgcaa attccttttc gtaccgatat tcgaggagaa ataaatacag tcaatgacag      3300
     agcaatatat agcaaacaat atccttatgc catgtcggtc tcagatttcg ttaataatga      3360
     aatcgataga atgctaaaag aacaaattat aagaccaagt aggagcccct acaattcacc      3420
     agtcttagta gtgcccaaaa aaggtcaaaa cgaagatgga tctccaaaac atcgattagt      3480
     tattgactat aaaaaattaa atgaaagtac aatacctgac agatacccga tgcaagatcc      3540
     gtctgtaata ttatctaact tagggaagtc aaaatatttc tcaacaattg atctggaatc      3600
     aggattccac caaattttaa tgaaaaattc agatattgaa aaaacagctt tctctataag      3660
     taacggaaaa tttgagttct tacgtatgcc atttgggtta acaaacgccc ctagaatatt      3720
     tcaaagagca atggatgaca tattgagaga acaagtcgga aaaacttgtc atgtttatat      3780
     ggatgatata ataatctttt ctaatacaat tgaacaacat tacacagatt taattcaaat      3840
     aataaatatt ttacaacaag caaatatgaa aatttctcta gaaaaatcta aattctttaa      3900
     attagaaaca gcatttctag gttatatagt atctcacaat gtaattaaaa cagatcctga      3960
     gaaaatctcc acaattatga agtatccgat tccacaaaac attagagaac ttcgaagttt      4020
     tctaggcctc accggctatt accgtaaatt tgtccgaaat tatgcaaaaa ttgccaaacc      4080
     tttaaccaaa tacctaggag gagataatgg aaaaatttct aggagaatgt ccacaaaaat      4140
     tacaatacag ttagacgacc cagctgttaa agcttttaaa gaacttaaag ataatttaat      4200
     agcacaagtg gaattagttc aaccagatta taccaaaaaa ttcactttaa cgacagacgc      4260
     atcagatgta gctatcggag cagttttatc acaggataat aagccaatta ctttcatatc      4320
     caaaacttta aataaaaccg aacaacttta tgccacaaat aaaaaagaat tgttggcaat      4380
     agtttgggct cttaaaaatc tcaggaatta cttatatggt gtaattggta tagaaataca      4440
     aacagaccat caatctttat ctttcacaat ctcagataaa aacccgaacg tagaaatgaa      4500
     aagatggtac tcctttatag aaagtttcac cccgaaaata atatataaac ccggaacaac      4560
     taatgtcgta gccgacgcat tatctcgaat aaaaataaat aatattacta acagcgactt      4620
     agaacaatca aactcagatc aaaatacaca gcattctgcc gaaagtagtt ttgaaaatgt      4680
     aatacaagag acccgaaaac cgttaaatca gtttcaacaa caactgttat taacaaaggg      4740
     gaggtataca atacatgagt cattgaatgt ttttgataag acaagacata taattgaata      4800
     tgatacgcca gaaaacttaa tagaaatatt aagggaatat ctaaaaccaa acataacggt      4860
     aggaattcat tgcactttag aagatcttta tcatatccaa ttaccattaa aaaataactt      4920
     taccaataaa tttctttata ctaaaatatt tctacaagac gtggaaaata atgaagataa      4980
     ggctatcata atagaagaaa cacatagtcg tgctcacaga ggactagacg aaaattataa      5040
     acaaatcaat agattatttt attggccaaa tttatatatc aaattaaagg aatatataaa      5100
     aaattgtaca atttgcaacg aaaataaata caaccggcat cctattaaaa tccctattgg      5160
     ggaagctcct attccaacta aagaaggaga gaatttacac atcgacattt attacgcgca      5220
     aagtcttatt ttcttaacct gtattgacgc gtattcaaaa ttcctggttg taaaagaaat      5280
     tcaaaataaa ctaaacatcg agaataaagt aatggaatta ctccaacagt ttccccacgc      5340
     caaagtaatt atgactgata atgaaccgag cttcacctct gctcaattta aatcttttgc      5400
     acaagatgtg gtttaactct acatttcgcc gaccccagac acagtacctc gaacggacaa      5460
     gtagaaaggg cacattcaac attaacagaa ttagctcgct gtataaagga agaatttaat      5520
     ctcactgact attctgaaat aattattaga gccgcaaaag aattcaatca aagcattcat      5580
     tccacaacaa accaaaaacc ttttgatatt ctatataata aagttgatca cgaaaatact      5640
     tcaagaattc taaagaacac acaagaaaaa atgttagtaa cacacaatga aggtcgtaaa      5700
     gaaaaagaat atcacgtagg tcaagttgtt tatgagaaga aacacggaga aagaaataag      5760
     ctaaaaacta gatacaaaaa acaggttgtt aaggaaaact tacctaacaa agttataatc      5820
     aataacagaa acaggactat tcacaaagac aacattaagt tttaacaaat accatatttt      5880
     ttttattaaa ttacagaaaa tgcatttcgt attactttta ataacattcg caatgataac      5940
     cacttcagaa ataattgatt actccaatca cgaattcttc ctgttcaagg acaaaaagga      6000
     tgtccttacc tatgaatcat atgctgactt attccacgta actaacttaa gtttttataa      6060
     agaaataatc aatctagaat caggatatgt aagaaaagat aaaaatatac ggacacaatg      6120
     ggaaattact tacgaaatgc agataataga attaattttg tcacaactga taccaactag      6180
     atcaaaaagg ggaatatatg agttaggcac tgtttggaaa tggttagctg gaactctgga      6240
     tcacgatgat ttcattaaaa tacagaataa aataaatgat ttaattgaaa acaataacca      6300
     acaatttatt attaattcca aattgtttaa agagataaaa tcactttccg atcattttaa      6360
     aaacattttt atcgatcaag aattgccatt aagaaaacat cgtttacgtt tattaacatt      6420
     tgacttacaa aacattattg atactatcac actggccaaa attgatttat tcaacacaaa      6480
     aattttaaat aatgaagaca ttaaagaaat attagatcac gaacaaaagc ctgtacttat      6540
     tgcagaccta atggacatcg ccatattcaa aattgtattg cataaagaac tcttagtaat      6600
     ttatataaaa taccccgtta taacaaacag atgcgaaatt tactatgcca gatccatttc      6660
     acataatgat ggaaaattac ttataagtaa tcaggtcgca aaatgcgaaa atacctttta      6720
     tgaaatatct aattttaaga acgaactttt caacaactat tgtattataa gtaaagataa      6780
     gacttgtttt acccgcttac taaatggaga aaaatcaatt tgcacaaaaa ttctagaaaa      6840
     aaataagaat atagatatca ttcaagaagg tgccattcta ataaatggaa ataatattgt      6900
     gaatgattct catttaaacg ggtcatattt aataacattt aacagcacaa ctacaataaa      6960
     taatattcat acaccaattc agaaaacaaa atacttgagt acataactac caaccacttt      7020
     aaaaacttag aaatatcaga atatataaaa tccaacaatt cagaactttc tcttgacaac      7080
     attaatattt taaacccatt tattgaaatt tacaattgga aaatttcaat ttcatttata      7140
     ttattaattt taatcatttt gtatttcatt actatattaa taataaaatt cagatattat      7200
     atatttgtaa ccaaacaaaa acggccagaa ccagaaaaac caaataacga tgtagaattt      7260
     ttaacagaat taaatgagcg tttgaacgaa attaataatg aagcgggacg cgtcatttta      7320
     gaagggggag agttatccaa cccatgaaca tagctccctt ccacagttta taaacaaatt      7380
     tcaattctca aatctcgtcg gcatttcctt tgtctttgtt tttgtcattg cccttgccag      7440
     cactcagcta cccgctaaca taagcaaccc aaacttaacg taaacacagc ttccgcttgg      7500
     agaccaaatc acggccgact tattgcgtat caatcaaaaa ctgcatcgat cagcataatt      7560
     gaatttcaca atgcagtgga aaatttccag cataaagctt ttatcgaaag ttcggtaatt      7620
     ttccgaaaga aaagcttctg gccgaggttg attggatcag gacttagaat ttgaagatca      7680
     gtctgaaaga gtcgggagtc tgaatcggga cgagatcgtc aacagctcga agctaaatat      7740
     aagctaccaa taaagtgtct cgtaatagta taagtgaaaa agtttatcac caaataaatg      7800
     ttaaataata aaaaataaaa tttatttttt taaataaata aagagtaaca attttaatt       7859
//
ID   VEGE_DW     repbase;    DNA;    INV; 884 BP.
XX
AC   AF518730;
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila willistoni Vege miniature inverted-repeat transposable
DE   element, complete sequence.
XX
KW   VEGE_DW; Vege; miniature inverted-repeat transposon.
XX
OS   Drosophila willistoni
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   willistoni group; willistoni subgroup.
XX
RN   [1]
RA   Holyoake J.A. and Kidwell G.M.;
RT   "Vege and Mar: Two Novel hAT MITE Families from Drosophila
RT   willistoni.";
RL   Mol. Biol. Evol 20(2), 163-167 (2003).
XX
DR   Genbank; AF518730; Positions       1     884.
XX
SQ   Sequence 884 BP; 292 A; 151 C; 133 G; 308 T; 0 other;
     cagtgttgcc aacttttgtc gaccaaaaaa gctgtgtttg acgggagaaa attaaaaaag        60
     agcttttatt tttacaaaat gtttagtatt tgatctaaat catcacaata aatttccttg       120
     tcgtacgatc ccataatgcc tttgtttgac agacgcagac cgtatctata aatatataca       180
     tttcattatt aacttttcaa tattagtttt aaatattaat ttacctgacg cataaaattg       240
     agttaagcat ttgagtgttt attttgtttc gtaatttggt ttttacgaga ttgacttggc       300
     tgaaaattct gaaaacaatg tcattgcaaa agtggccaag tccccaaatt tattatttca       360
     acccgaatac ttatgtatgt atgtatgatc gcacttcaat tcaaaacttt gtagtgtcgt       420
     tttaaattcg tcgctattaa gcctcacttt acggcacctt tgcttatatt cctttggcat       480
     tttgcagact taatggactt aatggcacaa ttttgaaatc acaaagttca ataatcgttt       540
     cgttcacaat aagatcaatt gaactatttg agcgaactaa gcttctagtt caactaatca       600
     tattcaagtt cagttgactc cgctctatta tcgataagtt cgcttatcaa aaattgaact       660
     actgaaatat atcggtttaa ttcagctaca atgaacaact attattgtta gtacgattta       720
     tcgctaaaat attttaaatt tcttagaaaa tgaaagagcg gaaaaaaggc ctttcataaa       780
     aaaaaatcca gaattcccgc tgcccgttgt ttcgaaattt ttcccgcaaa tgcattatca       840
     aaaaagccag atttgacggg aaaaaagctg atttggcaac actg                        884
//
ID   Vingi-10_LMi repbase;    DNA;    INV; 1871 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-10_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1871
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3504-3504 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(26..331,327..551,479..1468,1294..1839)
FT                 /product="Vingi-10_LMi_1p"
FT                 /translation="AVNSRQDCSPTSVNGEILSKGRVKVQRDIGSKVDALT
FT                 RRSVLRTRKRSLNERTPSKVAGLDDIRTEQLKLGCNSEMDCTIMNNCIANV
FT                 HIPXLWRKGKVVARPAKTGKEPTDPQNFRPVSLLXHLYKALERMILDRIFD
FT                 AIETKIIPEQAGFSLVNHVAAKYSASPNTQRTVSKGNKPGKSCCGQVLSLT
FT                 QHTEDGFERKQVTGVAFIDLSAAYDTVNHQRLLVKFYNMTKDFRMTKLMEC
FT                 LLQNRHFYVTLQGRNSCWRRQKNGLPQGSVLSPILYNIYTNDQPINAETRK
FT                 FIYADDTAVAAQGKSFDEVEGKLMRALEDLTVYYRENFLKPNPSKTQVCAF
FT                 HLKNKDANRQLKVTWQGQELNHDDSPKYLGIRLDRTLTFRKHCQNVKGKVC
FT                 ARNNIIRKLTSTKWGAQPQVLRTSALALCFSAAEYAAPVWYNSAHSKHVDV
FT                 AINETVRIVSGCLKPTPVQQIYPIVGIAPPPSEGKSQLSPKGGNSVMIIGT
FT                 RYTATNHSTGDDSSHSVWLPKTNPSSANLPDCRHSSTPLRRQVAAESERRK
FT                 QRDDNRHPLYGYQSQYRRLKSRRSFMQVTKPLDEPPEKRRQNLWQNRVHQS
FT                 LIKPREQLAAGNHLPFPTWRALNRLRTGVTRCNTNMRKWGYKESDSCECGA
FT                 VQDYQHLMKCTKIGKTCTVTDLIEANDKAIHVADYWKYVV"
XX
SQ   Sequence 1871 BP; 612 A; 409 C; 424 G; 423 T; 3 other;
     ccctgcaccc cagcccctaa cctaagcggt gaactcccga caagattgct caccgacttc        60
     tgttaatggg gaaatactat caaagggaag agtgaaagta caacgagata tcggcagcaa       120
     agtggatgcc ctcacacgcc gttcagtact gaggactaga aaacgatccc taaatgaaag       180
     aacaccgtcg aaagttgctg gcttggacga catccgcaca gaacaattaa aattaggctg       240
     caactctgaa atggattgta caattatgaa taattgtata gctaacgtkc atattccama       300
     actgtggaga aaaggcaagg tggtagcccg ctaaaacagg caaagaacct acagacccac       360
     aaaacttcag gcctgtgtca cttctgwgtc atctttacaa ggcacttgaa agaatgattc       420
     ttgatagaat ttttgatgca atagagacta aaatcatacc tgaacaagcg ggatttagcc       480
     tggtaaatca tgttgcggcc aagtactcag cctcacccaa cacacagagg acggtttcga       540
     aaggaaacaa gtaactggag tcgcttttat agatctctcg gctgcctatg atactgtcaa       600
     ccaccaaagg ctgcttgtta aattttataa tatgactaag gacttccgga tgacaaaatt       660
     aatggaatgt ctgcttcaaa acagacattt ttatgtgacg ctacaaggga gaaatagctg       720
     ctggagaagg caaaagaatg gcctacccca aggcagtgtc ctatcgccaa ttttatataa       780
     tatctacacg aacgaccagc ctattaacgc tgagacgaga aagtttatat atgccgatga       840
     cactgccgtg gctgcacaag gaaaatcgtt tgacgaagtg gaagggaaac tgatgagagc       900
     gctcgaagat ttaactgtgt actacagaga aaattttctg aagccaaatc cctctaaaac       960
     tcaggtatgt gccttccacc ttaaaaataa agacgcaaat cgacagttga aagtgacatg      1020
     gcagggtcag gagttgaacc atgatgattc gccgaaatat ttgggtatcc gtcttgacag      1080
     gactctgact ttccggaagc actgtcaaaa tgttaaggga aaggtctgtg caagaaataa      1140
     tatcatccga aaacttacta gtacgaaatg gggagctcaa cctcaagttt taagaacatc      1200
     ggctcttgca ctgtgttttt cagcagcaga gtatgcagcg cctgtttggt acaactctgc      1260
     acactccaaa catgttgacg tggcaattaa tgagacagtt cgcatagtgt ctggctgcct      1320
     aaaaccaacc ccagttcagc aaatttaccc gattgtcggc atagctccac ccccctcaga      1380
     aggcaagtcg cagctgagtc cgaaaggagg aaacagcgtg atgataatag gcacccgcta      1440
     tacggctacc aatcacagta caggcgactg aagtcccggc gaagttttat gcaagtgacc      1500
     aaacctttag acgagccgcc tgaaaaacga cgacaaaatt tatggcaaaa cagggtacat      1560
     cagtcgctaa taaagcctag agaacaactg gctgctggga atcacctgcc ttttccgaca      1620
     tggagggcgc ttaatcgcct aagaactggc gtcacacggt gcaatacgaa catgaggaaa      1680
     tggggctaca aggagagcga ctcctgtgag tgcggtgcag tacaagatta tcaacatcta      1740
     atgaagtgca caaaaatagg caaaacttgc acagtaacag accttattga agcaaatgac      1800
     aaagctattc atgtggctga ttattggaaa tatgtagtat agttggtgac ccggacacgt      1860
     aaagtaagta a                                                           1871
//
ID   Vingi-11_LMi repbase;    DNA;    INV; 2844 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-11_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2844
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3505-3505 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(146..571,478..786,790..957,967..1866,
FT                 1925..2086,2071..2814)
FT                 /product="Vingi-11_LMi_1p"
FT                 /translation="TLSQETQIILKFWQLRYNDLLLRQYYKPSNIPFSFHK
FT                 PNNFHNQTVKIILGDFNCQSVNWGYNSTDKNGEELEIWSEREGFKLIFDPK
FT                 LRPSFISGRWQRGYNPDNIFVTETIAHHVTKTVEEPFPRTQITLCLVWFPE
FT                 LSEDHRTSCYKNSRRTLPQDTNYPVSCVVSGVVRVENVPFKRRFNFKKANW
FT                 KAFREELDLKVENIEADPKDYKEFLELVKKTSRRHIPRGCRTQFISGLDEA
FT                 HKISATIITSTTQILXQQIYRSXGRTTPRRTEQKRERWAKLLSDLDMKQNS
FT                 RRAWKLIKISHEPATEYKRNPKQIAHQLLLNGKIRQKATKLNLKRNMGGES
FT                 DSLGTPFSPEELGRTVRELKENKAAGPDNIRTEQIKKFGPKTNEWLVRMMN
FT                 RCLETFQIPKLWRKAQVVAVLKPGKEPTEPKNFRPISLTCHLHKLFERMIL
FT                 SRIATKIDTKLIPEQAGFRPGKACCSQILNLTQHIEDGFERKLITAAAFVD
FT                 LSAAYDTVNHQRLLTKVYEITNDIRLTYMLRGMLQNRRFYVTLQGKKSRWR
FT                 DQKNGLPQGSVLSPILYNMYTNDQPHQPEIRDSFMQMTLPLLLKEERLKKL
FT                 KENSGKNEVCAFHLRNREASRQLAIEWRGVRLRHCAKPKYLGVSLDRTLSF
FT                 KNTAPIKHCTDLKGKICARNNIIRKLTGSTWGAQPEVLRSSAMGLCFAAGE
FT                 YAAPVWEASCHSKQVDIALNETVRTVTGCLRPTPVHKIYPLAAIAPPNIRR
FT                 RVASEVERRKQQTDPRHLMYNHQAVPARLKSRKSFIQRTVPLEGRPETRRL
FT                 SLWTDSLQNTNLQPKEEIAQGQQLQYSTWRTLNRLRTGVTKCKVNMVKWGY
FT                 SEDDQCECGNIQTNEHLLMCPRMEVVCTTEDLLLCNDKAIKAAEFWKKTV"
XX
SQ   Sequence 2844 BP; 1017 A; 601 C; 607 G; 617 T; 2 other;
     gcaaagaatt ctcatgggat attttaccat tgcaagaaac acacagagga gtaaatgatc        60
     gaagaccaaa attgatggga tgaaaatgtg ttagaacgcc ctcatcaaca atatgacagt       120
     gctatatttg taagatctga tatagacgtt aagtcaagag acgcaaataa tactgaaatt       180
     ttggcaattg agatacaatg atttactgtt acgtcagtac tacaaaccat ctaacattcc       240
     atttagcttc cacaaaccaa ataatttcca taaccaaact gtcaaaatta tcctgggaga       300
     ttttaactgt caaagtgtca actggggcta taactcaact gataaaaatg gggaagaact       360
     agaaatctgg tcagaaagag aagggttcaa gcttattttc gaccctaaac taagaccatc       420
     atttattagt ggcagatggc agagagggta caaccccgac aacattttcg ttactgagac       480
     catcgcacat catgttacaa aaacagtaga agaacccttc cccaggacac aaattaccct       540
     gtgtcttgtg tggtttccgg agttgtccga gtagaaaatg tacccttcaa acgccgcttt       600
     aatttcaaga aagcgaactg gaaggctttc agagaagaac tggacctcaa agttgaaaac       660
     atagaggcag acccaaaaga ctacaaagaa tttcttgaac ttgtgaagaa aacatcaagg       720
     aggcatatcc cacgtgggtg taggacacaa tttatatctg gccttgacga agctcacaag       780
     atctcttgag cgactatcat aacaagtaca acgcagatcc tttstcagca gatctatcga       840
     agckggggaa gaactactcc gagacgtact gaacaaaaac gggaaagatg ggctaaatta       900
     ttatctgatc tggacatgaa acagaacagt cgaagagcgt ggaaactgat aaaaatctag       960
     caatgatccc acgagcccgc cactgagtac aaacgtaacc cgaagcaaat tgcccaccaa      1020
     ctgctactaa atgggaagat aagacaaaag gcaactaaat tgaatctcaa gcgaaacatg      1080
     ggaggagaga gtgactctct aggcactcca ttctcacctg aagaactggg aagaacagtg      1140
     cgagaactca aagaaaataa agcagcaggc cctgataaca tacgaactga acaaataaag      1200
     aagtttggtc caaaaactaa tgaatggcta gtgaggatga tgaacagatg tttggaaaca      1260
     ttccaaattc cgaaactgtg gaggaaagcg caagtagtag cagtactaaa gcctggcaaa      1320
     gagccaaccg aaccaaaaaa tttccgacct atctcattaa catgccactt acacaagctg      1380
     tttgaaagaa tgatcttgtc aagaatagca accaaaattg atacaaaact tatccctgaa      1440
     caagctggtt tcagaccagg gaaagcatgt tgtagtcaaa tactaaacct cactcaacac      1500
     atcgaagacg ggtttgaaag aaaattaata actgctgcgg cctttgttga tctttctgct      1560
     gcgtatgata cagtaaacca ccaacgactc ctcacgaaag tctatgaaat aacaaacgac      1620
     atacgactga cttacatgtt aagaggcatg ctgcaaaatc gtagattcta tgtaaccctc      1680
     caagggaaga aaagcagatg gagggaccaa aagaatggtc taccacaagg aagcgttctc      1740
     tcccctattc tgtacaatat gtacacaaat gaccagccac accagccgga aataagagat      1800
     tcatttatgc agatgacact gccattactg ctcaaggaag aacgtttgaa gaagttgaaa      1860
     gaaaactgac agaggctttg gctaccttgg ggaactacta tgaagaaaac cacctgcgac      1920
     ctaatccgga aaaaatgaag tatgcgcatt ccacctgcgt aatagagagg catcaagaca      1980
     actggcaata gaatggagag gcgttagact acgccactgc gccaagccta aatatttggg      2040
     agtcagctta gaccgaacgc tgtcatttaa aaacactgca ccgatctaaa aggaaaaata      2100
     tgtgcaagga acaacattat tcgtaaactg actggatcca catggggagc gcaacctgaa      2160
     gttctgcgat catcagcaat gggactctgt tttgcagcag gagaatatgc ggcaccagtg      2220
     tgggaggcat cgtgccactc caaacaagta gacattgctc taaatgagac tgtcaggact      2280
     gtcactggat gtttgaggcc aacacctgtc cacaaaattt acccacttgc ggccatagca      2340
     ccgccaaata tcagacgtag agtagccagt gaagtagaaa ggaggaaaca gcaaaccgac      2400
     ccacggcacc taatgtataa ccaccaagca gttccagccc gtcttaagtc taggaagagc      2460
     tttatccaac ggaccgtacc actagaaggc cgacctgaga ctcgccgcct atctttatgg      2520
     acggattctt tacaaaatac gaatctacaa cccaaggagg aaattgcaca agggcagcaa      2580
     ctacagtata gtacatggag aacactgaat agattaagaa caggagtcac aaaatgcaaa      2640
     gtaaatatgg ttaagtgggg ctattctgaa gatgaccaat gcgaatgcgg aaacatacag      2700
     actaatgaac atttactcat gtgcccaagg atggaagttg tttgcacaac ggaagatctg      2760
     cttttatgca atgacaaggc cattaaagct gcagagtttt ggaagaagac agtttagatg      2820
     ttctcacccg gacacggaaa gtaa                                             2844
//
ID   Vingi-12_LMi repbase;    DNA;    INV; 2056 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-12_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2056
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3506-3506 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(512..685,669..1085,1089..1190,1194..1571,
FT                 1559..1930)
FT                 /product="Vingi-12_LMi_1p"
FT                 /translation="RXTVSKIXPCQNXEXQGSXXLKXGKEXDLPXSYXPIS
FT                 LLCHXYKLYEXLILLRIETRGGLRHVDNLLIPQQGGFRPGRSXAGXVLALT
FT                 ERIEWFRRKINNWRGFCRLSAAYDTVNHRKLFSKIYESTKDYQLTKVVEST
FT                 XQNRRFYVTLDXKKSRWRRQKNGLPQGSVLAPMMFNIYQMISRHQSTLNIS
FT                 SMLMILQLFKETALNLWNKYWNKILNVCQNTIKKIFLSRIHKLKYVLSIYA
FT                 LRKQEDNCMLCGRVKFYSMKAIQSIWALSGQITNLQISLSQDQAESYDKKS
FT                 PPEEIMWEQMGSKPKNVKNYSTSPLFLHRRICSPCVVQISPCQTSRHCSKR
FT                 NLQNYYRLHETDPPNRSPLNKLYKAAGFETPATRRCELEYIEKFKQSFDDR
FT                 HPLFGAESPASRLKSRSFLXTERIEPPGNFPLQQEPPTGTHLNWKIWRSLN
FT                 RIRTSVAPVKSNLAKWGFITIQTYPVNVERHRRWNT"
XX
SQ   Sequence 2056 BP; 699 A; 455 C; 417 G; 464 T; 21 other;
     gatgccgtta cagacctagc accaacacta tcaaataggg tgtagacaac agtacatacc        60
     tggattaaca agtgattcag ctacgttatt gaagcataca ctgtcttata cgaaagagat       120
     ccttttggtg aggaaacaat tgaatgtgga aatgctttgc tagctaacct gaataaagta       180
     aggacaacat aaatggctga tgttgcagcg aatggacatg actcatagct ccaaacgagc       240
     ttggagcttg attaaaaact ttggctctga tccaaagaac tgaagcaagc tagtaatgtc       300
     acccctgacc aaattaccag cactctccaa attatgggaa attaaaatgc caccaaaaat       360
     tcaggttgca aagagatcca caaaatgaaa tcaacctgct aaagaaattc ttcactcaaa       420
     aagagctcaa tgatgccatt cacaccgtga agtggaaaag cagcaggcag agatgacatc       480
     tgcaccgacc aaatcaaaca tttcggccta aaggwtaact gtgtcaaaga tctsaccatg       540
     ccaaaatkgw gaamagcaag gatcawtgmc attaaagscc ggtaaggaac mkgacctkcc       600
     agstagctac csaccaattt cccttctgtg ccacakgtac aagctatatg aaakgctcat       660
     cctgctgagg attgagacac gtggataacc tgctaattcc acaacaaggg ggcttccgcc       720
     caggcagatc atgwgcaggc wamgttctgg cactaacaga acgtattgag tggtttcgaa       780
     gaaaaattaa taactggcgt ggcttttgtc gtttgtctgc cgcctatgat actgttaatc       840
     acagaaaact tttctccaaa atatatgagt ctaccaagga ctaccagctg acaaaggtcg       900
     tagagtccac amtacaaaat cgccgcttct atgttactct tgatgsaaag aaaagcagat       960
     ggaggagaca gaaaaacggt ctcccacagg gaagtgtact cgcacctatg atgtttaaca      1020
     tataccaaat gatcagccga caccagagca ctctgaacat ttcctctatg ctgatgatct      1080
     tgcaatagct gttcaaggaa acagctttga atctgtggaa caaatactgg aacaagatct      1140
     tgaatgtatg tcaaaatact ataaagaaaa ttttcttaag ccgaatccac taaaaactca      1200
     agtatgtgct ttccatctac gcactaagaa agcaagaaga caactgcatg ttgtgtggga      1260
     gggtaaagtt ctacagcatg aaagccatcc aaagtatctg ggcgttatct ggacagatca      1320
     ctaacttaca aatatcactg tcacaagacc aggcagaaag ttacgacaag aaatctcctc      1380
     ctgaagaaat tatgtgggag caaatgggga gcaagcccaa aaacgtcaag aactacagca      1440
     caagccctct gtttctccac cggagaattt gcagcccctg tgtggtgcag atcagtccat      1500
     gccaaacaag tcgacactgc tctaaacgaa acctgcagaa ttattacagg ctgcatgaaa      1560
     ccgatccccc ctaaataaac tttacaaagc agcaggtttt gaaacacccg caacacggcg      1620
     atgtgaactt gaatatattg aaaagttcaa acaaagtttc gatgacagac atccgctttt      1680
     tggagcagaa tctccagcca gtcgacttaa atccagaagc tttctgwaca cagagagaat      1740
     tgagccgcca ggaaatttcc ctctccaaca agaaccacca acaggaacgc acctgaattg      1800
     gaaaatctgg agatcgctga acagaattag aactagtgtg gctcccgtca agtcaaacct      1860
     agcgaaatgg ggattcataa caatccagac atatcctgtg aatgtggaga gacacagacg      1920
     atggaacaca taacaaactg ctctgattgt ccgtctacat gcaattccga agatttatgg      1980
     ctcacaagag aaaatgctat caacgtggcc cagtggtggg ctgaaatatt ttagttctga      2040
     atttgaaacc cggaaa                                                      2056
//
ID   Vingi-13_LMi repbase;    DNA;    INV; 1478 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-13_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1478
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3507-3507 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
SQ   Sequence 1478 BP; 483 A; 334 C; 287 G; 374 T; 0 other;
     caacaacgcc ttaaaacatc aaaacatcag tggcttttgt tgatctcacg gctgcctacg        60
     atacagtatg gaaagaagga ctcctgtaca aactcgcacg tgttatacaa tgccaaacca       120
     taattaagct cataaataac atgttatctg agagatactt ccaagtggtc ctcggtaatc       180
     aactaagcag gcagaagaaa cttaataatg gtctccctca aggttcagtt ttggcaccaa       240
     tgctgttcaa cttgtacatg tctgacctcc ctgaaacaga gtcaaggaaa ttcatttatg       300
     cagacgatct ggctttggcc acccaacaga gaactcttga agctggtgag gagatccttt       360
     ctgcagacct gagcataatg gacaaatact tcaaaaagtg gagactaaca ccaaacccaa       420
     cgaagaccga agtctgctgc tttcacctta acaatagaat ggccaatgcg aagttaaata       480
     ttatctttaa cggtcaggtc cttcatcacc aagactaccc taaatattta ggagtaactc       540
     tagacagaac tctctcctac aagaaacaca tagaaaacac cgcagcaaaa ctaagatcac       600
     gtaataacat catacagaag ctgagtggta cctcatgggg tgcaagagct acaactctgc       660
     gatgctcctc cttaggtctg gtctattctg ctgccgagta ctgtgctcca gtgtggctta       720
     atagctcaca tgtgagaaaa attgacgtag agctaaatgc aacaatgagg acaataacag       780
     gctgcatcaa atctactcct gttcactggt taccaagtct aagtcacatt gagcctccag       840
     accttcgaag acagaacgcc cttctcaagg aatacgaaaa attactgaaa atccccgaac       900
     ttccaatcca ctatgatgtg cctgctctcc gaatgagccg tctaaaatct aggcaaccat       960
     ccatcttatt ggcagaatca ctgcaggcaa ctagattcaa cattaaaaga aagtggacag      1020
     aaatgtggaa caatgttgcc tgtgagaaat atcagaccct ccaaagacct gacgcaagac      1080
     cagctggaat ggaattacca cgtcgtgcct ggaaaacact taataggatc cgcacaggcc      1140
     atggcgtctg tgctgaaaac ctccaccgtt ggggaaaggc ttcatcctcc cagtgtgact      1200
     gtggaaacga gcaccagaca atcaaccaca ttgttacaag ctgctgcaga agagcttatc      1260
     aaggaaatct agaagatttc tttgaagtga cagaggcagc ccttgaatgg atagaaaacc      1320
     tagatattaa tttgtagatt tagttgttta cctcttttat agtttgtaaa attatgcagt      1380
     taatgtactt tttgttgttg ttgtaaattt tgtaaaatca aacaaactca tgattgctag      1440
     ttgcagttca tctgtattgc catacgctaa ataaataa                              1478
//
ID   Vingi-14_LMi repbase;    DNA;    INV; 3261 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-14_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3261
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3508-3508 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(132..1289,1286..1528,1524..3047)
FT                 /product="Vingi-14_LMi_1p"
FT                 /translation="MLTIISVNIEGLSSSKENLLHEMCQSNKCDVLCLQET
FT                 HRDNNHRRPNIPGMKLVAERPHAQYGSAVFTKPDLQVKSTCHTEENNIETI
FT                 TVELKDYTVTSVYKPPSEIFAFTPPANFVKEKISFVIGDFNSHSHVWGYAS
FT                 EDKSGEAVLAWAESSQLSLIHDNKLPPSFYSRRWHRGYNPDLLFVSENIAI
FT                 QSCKSVCPPIPNTQHRPIMCQLFPAIRPQNVPFRRRYNFKKANWDRFSGLL
FT                 DEKIQTINPAPEEYDLFVDTIRTCSKASIPRGYRSNYVKGLDSEAATNLDR
FT                 YYTLFERDPFGEETLAQANLVTSSISEAKKKEWVKQMEELDMGRSSNKAWR
FT                 LLKRLATDQLNLKHANVKSNQIAHQLLKNGKPVRRNRNVQNSRQIERDISQ
FT                 ETSEISKPFSMTELDKAISKSRNGKAAGLDDICVEQIKNFGPAAKKWLLAX
FT                 MNNCMSACKIPKIWRKTRVIAIPSETWEEPDDXXSYRPISLLCHLYKTLER
FT                 MILNRLTEVVEPLLIPEQAGFRTSKSCTAQILKLVQHIEDGFEERKITGAV
FT                 FIDLTAAYDTVNHRLLLQKFYTSCKDYGMTQMIGNLLQNRRFFVDFQGQRS
FT                 RWRTQKNGLPQGSVLAPLLFNIYTNDQPLPEGTQSFIYADDRAITAQGNTF
FT                 ETVESKLSEALEQLAIYYKENQLTPNPRKTQTCAFHLRNRQATKKLNVSWD
FT                 GIPLVHCATPKYLGVTLDRTLTYRDHCMNTKQKVAARNNIVRKLAGTTWGA
FT                 EPSTLRTTTLALCYSAAEYACPVWYNSSHAKQVDIPLNESCRIITGCLKPT
FT                 PTDKLHCLAGIAPPSIRRKVAASKEKLKSVTSAAHPLFGQQPARRRLISRR
FT                 SFLHTTECLTDTPQNTRTEMWRNKNVHLHDWLVPTEELPPGHGEKRNVWRS
FT                 LNRLRSGVARTKSNMHRWGLSDESVLCDCGQEQTTSHLMQCELCPSTCTVE
FT                 ELMKATPNALDVASFWSKIS"
XX
SQ   Sequence 3261 BP; 1077 A; 792 C; 673 G; 716 T; 3 other;
     gagaagcctc cccgcggaac atattaatac gttttggcgt ctcccgggac ggcggcaaat        60
     tcctcaaacc agaacatcaa cacagtcatt aaaatgcctc ataaagaacc caaaagctct       120
     tttcagaacc aatgttgact atcatctctg tgaacataga aggtctctca tcttctaaag       180
     aaaacctact acatgagatg tgccagtcaa ataaatgcga cgtactttgc ctgcaagaaa       240
     cgcacaggga caacaatcat cgacgtccta acattcctgg gatgaaatta gtcgctgaga       300
     gaccacatgc gcaatatggg agtgccgttt tcactaaacc agatctccaa gtaaaatcca       360
     catgccacac tgaggagaat aacattgaga ccatcacggt cgaactcaag gattacacag       420
     tgacatccgt gtacaaacct ccaagcgaga ttttcgcctt tacgccacca gcaaacttcg       480
     ttaaagaaaa aatatccttc gttatcggtg attttaacag tcacagtcat gtttggggtt       540
     acgcaagtga agacaaaagt ggtgaagctg ttttagcatg ggcagaatct agtcagttgt       600
     cacttattca cgacaacaaa ctacctccat cattctacag cagaaggtgg caccgtgggt       660
     acaaccccga cctccttttc gtgagcgaga atatagcgat acagagctgc aaatcagtct       720
     gtcctcctat tcccaatacg cagcacagac caataatgtg ccaattgttt ccagccatcc       780
     gaccacaaaa tgtaccattc agaaggagat acaattttaa aaaggctaac tgggacagat       840
     tcagcgggct gctagatgaa aaaatccaga cgatcaatcc agccccagaa gagtatgatc       900
     tgttcgtgga caccataaga acttgctcca aagcatccat tcccagagga tatagatcca       960
     attacgtgaa aggacttgac tctgaggcag ctacgaacct agacaggtat tatactcttt      1020
     tcgaaaggga cccctttgga gaagaaactc tagcacaggc aaatcttgtt acctcctcaa      1080
     tatcggaagc aaagaagaaa gaatgggtca agcaaatgga agaactcgat atgggcagaa      1140
     gtagcaacaa ggcgtggaga ctacttaagc gcttagctac tgaccaacta aacctcaagc      1200
     atgcaaacgt caaatcaaac cagattgcac atcagctgct caaaaatggg aaaccagtca      1260
     gacgaaacag aaatgtccaa aatagcagat agagcgtgac atctcacaag agacaagtga      1320
     aatctctaag ccattcagta tgacagaact cgataaggca atcagtaagt ctagaaatgg      1380
     caaggcagct ggcctcgatg acatatgtgt ggaacaaata aaaaacttcg gacctgctgc      1440
     taaaaagtgg ttactcgcct tsatgaacaa ctgtatgtca gcctgcaaaa ttccgaaaat      1500
     ctggaggaaa acacgggtca tagccatctg aaacctggga agaaccagat gatcstaasa      1560
     gctatcggcc aatctcatta ctatgtcacc tatacaagac tctcgaaaga atgatactga      1620
     acagactcac ggaagtagtt gagccccttc tgatcccaga acaagccggc ttcagaacaa      1680
     gcaaatcctg cacagcacaa atactaaaat tagtgcaaca tatcgaagat ggattcgagg      1740
     aaaggaaaat tactggggct gtcttcatag acctgacagc tgcttatgat acagtcaacc      1800
     atcgactgct cttacagaaa ttttacacat catgcaagga ttacggcatg acacagatga      1860
     ttggtaatct cctccaaaac agaagattct ttgtcgactt tcaagggcaa agaagtcgat      1920
     ggaggacaca gaagaatggg ttaccgcagg gtagcgtgct ggctccactg ctctttaaca      1980
     tttacacgaa tgaccagcca ctcccggaag gcactcaaag ttttatatat gcagacgacc      2040
     gggccattac tgcccaagga aacaccttcg agaccgtgga aagcaaactg tcggaagccc      2100
     ttgaacaact cgccatctat tacaaggaaa accaactcac acctaaccca cggaaaaccc      2160
     aaacctgtgc attccacctg aggaatagac aagcgacaaa gaaacttaat gtatcatggg      2220
     acggaatacc gctagtgcat tgtgcaaccc caaaatattt aggagtcacc ttagatagaa      2280
     ccctcaccta cagggaccac tgcatgaaca ccaagcagaa agtagctgca agaaacaaca      2340
     tcgttcgcaa actagcgggc actacatggg gtgcagagcc cagcacactg aggaccacaa      2400
     ctctagcctt gtgttattca gctgcggaat atgcatgtcc tgtgtggtac aactcaagtc      2460
     atgctaaaca agtggacata ccgcttaacg aatcctgccg catcatcaca ggttgcttaa      2520
     agccaacacc gacggataaa ctacactgtc tagctggtat tgcaccccct agtattagac      2580
     gcaaagtggc tgccagcaaa gagaagctaa aatcagtcac gtctgcggcg cacccacttt      2640
     tcggacaaca acccgcccgt cgtcgactta tctcaaggag gagtttcctc catacgacag      2700
     aatgcctcac cgatacacca cagaacacca gaacagaaat gtggcgaaat aaaaatgtcc      2760
     atctccatga ctggcttgta ccaacggaag aacttccccc aggacacggt gagaagagga      2820
     acgtctggag atccttgaat agactgcgtt ccggagttgc aagaacaaag agcaacatgc      2880
     atagatgggg gctatcggat gaatcggtgt tgtgcgattg tggacaagag cagactactt      2940
     cccaccttat gcagtgcgag ttatgcccaa gcacctgcac agtcgaggag ctcatgaagg      3000
     ctactcccaa tgctctggac gtggccagtt tttggtcaaa aatctcctaa cattacaatt      3060
     acctattgta catgacattt atcctacatt ttagcttata aattttatta ctctctggac      3120
     atggccagct ttagccgaaa agtcttagcc ctacaaaata catgttcatg taatatctat      3180
     gaagagccta acaaacctat ctatccgatg tctaatgtac gtataaagtt tgatgcttct      3240
     gacacgatta aataaaataa a                                                3261
//
ID   Vingi-15_LMi repbase;    DNA;    INV; 3029 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-15_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3029
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3509-3509 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           421..2970
FT                 /product="Vingi-15_LMi_1p"
FT                 /translation="MLVILSHSHVWGYQEEDRNGAILNEWMDMYNLQLVHN
FT                 AKDPGTFRSGRWQKDYSPDLCIISKSGNNNTTQRKVIKSFPHSQHRPVIIQ
FT                 FGTEIPLVKSVPLPRWNFQLANWEQFRKSLDNSIQWIPPLPSNYERFLGAI
FT                 KVNAKRYIPRGFRKEYIPGWSEECDELYAEYQDSHSDSTADDLLRALNKNR
FT                 REKWHKTTAGLNFTHSSRKAWSLMRKLGTDPRLSNRVAHVNANSVAARLMN
FT                 ISKSKVEKAYTRTVKKELHIKRSQLEPHSDYSREFSIEEVETALKMVKVNK
FT                 APGFDGVYPEFLKAAGPKTKLWLTDFFNAILRTGKLPKLFKQAKIIAILKP
FT                 GKDGTDASHYRPVSLLSMTYKLLERLILNRIQETIDQIIPAEQGGFRKHRS
FT                 CCDQVLTLTTLVETGFQRGLKSAAVFVDLTAAYGTVWREGLMLKLIQIIPC
FT                 QKLAFLVNNMLSDRRFKVFLNGQSSRWRTLNNGLPQGSVLAPILFNLYIHD
FT                 MPDTNSTKIQYADDLALVFQSNDLKHCEQVLTSDLIKLSDYFHKWRLQPNP
FT                 NKTEVTAFHLNNKEAQRKLHVTFDGIEVPHNYNPVYLGITLDRSLTFKEQC
FT                 LKLSKKLASRVNLLRKIAGSNWGADANTLRSAALALVYSAGEYCAPVWENS
FT                 AHTTKIDVQLNEAMRIITGTVRSTPIQWLPVLANIAPQDLRRKAAKVKLIK
FT                 NVKAHKNSPLYDALQDPPACRLKSRKPPWCDTESTTSFDVTSKWQERWNEN
FT                 PPHNGHLVQDPSKKVEGFHLPRQTWSRLNRIRTGQGRCAYNMKKWGFLPSS
FT                 DCDCGAEEQTVGHIVKQCPLRAFNGDLESLHQVTESALDWLSNLDISI"
XX
SQ   Sequence 3029 BP; 951 A; 691 C; 648 G; 739 T; 0 other;
     accaaggtgc tgctgcacag caacaagtat gcaagtaaac ctacaatgaa tagtcctttt        60
     caggaccaac caagctcaga acacccagct catggtaaca acttaagaat atgtcacttg       120
     aacatgagtc gatttcatct gctaagactc agatctttca cgcctgatgc tgaatcggtg       180
     tgcaattcag gaaccaacca atctacagaa aagaaatctt ttggatatgt tctggctggg       240
     ctataaatgt gacagtaggc attgcaacat atgtcagatc catttctcta caaaatcatc       300
     ataagacaaa catcagagtc tgtcttggct atagagatgc aggcacacta ttgcgaatat       360
     ctacaaacct ccgcttattt ggcctaatcc actgttaggt ccttcatccc ccagttgtgt       420
     atgttggtga ttttaagtca tagtcatgtc tggggatatc aggaagaaga cagaaatgga       480
     gctatcctaa atgaatggat ggacatgtac aatctccagc ttgtgcataa tgctaaagat       540
     ccaggaacat ttcgatctgg tagatggcag aaggattact ctcctgattt gtgcatcata       600
     tcaaaatctg gaaataacaa cacaacacaa cgtaaggtta tcaaatcttt cccacacagc       660
     caacacaggc cagtcatcat ccaatttggc actgaaattc ccttagtcaa gtccgtccct       720
     ctaccgcgat ggaactttca acttgcaaac tgggaacagt ttcggaaaag tcttgataac       780
     tccattcagt ggattccccc acttccatcc aattacgaac gatttctggg agcgataaaa       840
     gttaatgcca agagatacat cccacgtggg ttccggaagg agtacatccc tggatggtcg       900
     gaagaatgtg atgagctata tgctgagtac caagactctc atagtgactc aacagctgat       960
     gacctcttga gagctctcaa taagaacaga agagaaaaat ggcacaaaac aacagcagga      1020
     ctcaacttca cgcattctag tcggaaagca tggagcctta tgagaaaact tggtacagac      1080
     ccaaggttgt caaatagagt cgcacatgta aatgccaatt ctgttgcagc aagactaatg      1140
     aatatttcga agtctaaagt agagaaggca tacacacgaa ctgtaaaaaa ggaactgcac      1200
     ataaaaaggt cccagctaga gccacattca gactattcac gcgaattcag cattgaggaa      1260
     gttgagacag ccttgaagat ggtaaaggta aataaagctc ctggttttga tggggtgtat      1320
     ccagagtttc tgaaagctgc cggcccaaaa acaaaattat ggctcactga ctttttcaat      1380
     gcgatactga gaactggaaa actaccaaag cttttcaaac aggctaagat aattgccatc      1440
     ttgaaaccag gtaaagatgg aacagatgct tctcactatc gacctgtatc gctactcagc      1500
     atgacctata agctacttga aaggctcatc ctaaaccgca tacaagagac cattgaccaa      1560
     atcatccctg ctgaacaagg tggctttagg aaacatcgga gctgctgtga ccaggtctta      1620
     acgttgacaa cattagtaga aactgggttc caacggggtc ttaaatcagc tgcagttttt      1680
     gtggacctca cagcagctta tggcactgtg tggagggaag gactgatgtt gaagcttatc      1740
     caaatcatcc catgccaaaa gcttgcattc ctagtgaaca acatgctctc ggacagacgc      1800
     tttaaggtat tcctgaatgg acaatctagc agatggagga cgctaaataa cggccttccc      1860
     cagggctctg ttctggcccc catcctattt aacctatata tacatgacat gccagacacg      1920
     aactccacga aaatccagta tgcagatgac ctagcattag tcttccagag taacgacctc      1980
     aagcactgcg agcaggtact gacgagtgac ctgattaaat taagtgatta ctttcataaa      2040
     tggagacttc aaccaaaccc aaataaaact gaggttactg cattccacct gaataataaa      2100
     gaagcccaaa ggaagctaca tgtgactttt gatggaattg aagtgccaca taactacaat      2160
     ccggtatacc taggtatcac tctagatcgg tccttgacat tcaaagaaca gtgcttaaag      2220
     ctttcaaaga aacttgcctc aagagtgaac ttgcttcgta agattgctgg cagcaattgg      2280
     ggtgcggacg ccaataccct acgctctgct gcgctcgctc ttgtgtattc tgctggggaa      2340
     tactgcgcgc cagtgtggga aaacagcgct cacacaacaa agattgacgt ccaacttaat      2400
     gaagccatga ggattatcac tggcactgtc agatctacgc ccattcagtg gttacctgtc      2460
     ctggctaaca ttgctccgca agatctgagg aggaaagcag ctaaggtaaa attgataaag      2520
     aatgtcaagg ctcacaagaa ctctcccttg tatgatgctc tacaggatcc cccagcatgt      2580
     cgtctgaaat cacgaaaacc tccctggtgt gacacagaaa gcaccacttc cttcgatgtg      2640
     acctccaagt ggcaagaacg ctggaacgaa aatccaccgc acaacggcca cctcgtgcaa      2700
     gatccatcaa agaaggttga gggattccat ctaccacgcc aaacctggtc gaggctgaac      2760
     cgcatcagga ctggtcaagg gaggtgtgct tacaacatga agaagtgggg tttccttcca      2820
     tcttctgact gtgactgcgg ggcagaggag caaaccgtag ggcacatcgt caagcagtgt      2880
     ccactgcgag catttaatgg tgacttggag agtttacatc aagtgacaga aagtgctctg      2940
     gactggttgt caaatttgga catttccatt taattgtatg tatatattct tgtatacttg      3000
     tgaaaaccat acgataaata aataaataa                                        3029
//
ID   Vingi-16_LMi repbase;    DNA;    INV; 2923 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-16_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2923
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3510-3510 (2014).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1081..1443,1447..1566,1648..2820)
FT                 /product="Vingi-16_LMi_1p"
FT                 /translation="PHQNLLRPFTQAEVDLALSKCKNGKAAGLDDIRVEQI
FT                 KNFGPITKAWLMELMNNCVQSCKIPKLWRKAKVIAIRKPGKDQNDPKSYRP
FT                 ISLLCHLYKLLERLILHRLMEKLEEYTYHTGWLTGEELHISSDETYTAHRR
FT                 WVSKERDHRSCIYRSDSSLRYCKQKIFLSNFRDKEADGDRKRMDYPRESVL
FT                 APALFNIYTNDQPLPEGTQSFIYADDCAITAQAHCFETVEENLSKALREMS
FT                 AYYRENQLRPNPGKTQTCAFHLKNRQAARTLKITWENTTLEHCTYPKYLGV
FT                 TLDRALTYKRHCLNTKQKVAARNNVIRKLTGTTWGAHPNTVRTSSLALSYS
FT                 AGEYASPVWFKSSHAKIVDVALNDTCRIITGCLKPTPLNKLYSLAGIAPPD
FT                 IRREVAAKSERGKSETSEAHPLYGHQPANQRLKSRKSFLRSTEALVGTSQQ
FT                 CRTELWRARYTGTAGWFTPCEKLPPGYTEKWSTWRSLNRLRSGVTKCKSNL
FT                 VKWGFLVESPLCECGATQTTSHLLQCTQCPATCTPEDLLHATPNAIQVANF
FT                 WASKV"
XX
SQ   Sequence 2923 BP; 981 A; 672 C; 586 G; 683 T; 1 other;
     tcgtttcaga acctggtcta acagttactt cagtaaatat agaaggcatg tcacaatcca        60
     agcaacagct gcttcaagaa ctgtgccatg aacagaagtt tgatgtactg tgcatacaag       120
     aaactcacag agatatccat caaatgcgac cgacaatacc tggtttgcag ctagctgcag       180
     aagtaaccca tgctaaacgt ggaggtgctg tttttgtcaa accaggaata cgagtcttga       240
     gtgcatataa ctaaatgaca ataacatcga gatcatcacc ttggaactta gtaacagtgt       300
     gatcacttcg gtgataagcg gtcctccttc cgaaaattct ccttgctcct ctaaaaactt       360
     cattcaggaa aaatatcttg gtaatatggg atatgaaaat gtgaacccgt tatgtctcga       420
     gctgaaacca acacccwcac tctcactcac gacagcaaac tacctcatcc ttcaaagtga       480
     aggtggcaac gtgacctcta tttgtgagtg aaactagcca acagtgttac aatcaatgtg       540
     taatttcata cccaccacac aacacgggta ccaataatgt gtcgaattct tcccatcata       600
     agaccccaag aaactggttt tagacgaagg gatagtttca aaaaggcaga ttggccgaaa       660
     ttctccaaaa tgctggatga aaaagtttat acacttagcc tgtgcctgaa agtatgaaca       720
     ctttttgagc tcttaattcc tcgcgagcat tatcccaaga gctgcaaaca aactacctga       780
     gggcattact tcagaaacag ctaccttgct cgatattata cccaatatga taatcccatt       840
     cagtgatgaa acccaaaaca gccagatccg tcctctcctc agtctccgag gcaaagagag       900
     tacaatgcga gaaactcatg gaagactgtg atatgagtag aagtagtcac aaggctggag       960
     gcttctaaag gcttaataat gacccttcac aggaatatgc aggaatattc gatctgataa      1020
     aattcataca tgaaaacacc tcattcaacc aggtctggta agaagacatg tgagagataa      1080
     cctcaccaaa atctacttcg accatttact caggctgagg tagatctcgc tctgagtaag      1140
     tgcaaaaatg gaaaagctgc aggccttgat gatataagag ttgagcagat taagaacttt      1200
     gggccgataa ctaaagcgtg gctaatggag ctgatgaaca actgtgtcca atcctgcaag      1260
     attcctaaac tctggaggaa agccaaagtt atagctatcc gtaagccagg aaaggaccaa      1320
     aatgatccta aaagctaccg ccctatatcc ctcctatgcc atctgtataa acttcttgaa      1380
     agactcatcc tacacagact aatggagaag ctagaggaat atacatacca cacaggctgg      1440
     ctttagactg gggaagagct gcacatctca agtgatgaaa cttacacagc acatcgaaga      1500
     tgggtttcaa aggaaagaga tcacaggagc tgtatttata gatctgacag cagcttacga      1560
     tactgttaat catagaagac ttcttatgaa gctgtataat gccactaaag attaccaact      1620
     tacctgcttc ataaggaatc tccttgaaaa cagaagattt ttttgtcgaa tttcagggac      1680
     aaagaagcag atggagatcg caaaagaatg gattacccca gggaaagtgt gcttgctcca      1740
     gccttgttca acatctatac aaatgatcaa ccactacctg aaggaacaca gagcttcatc      1800
     tatgcagatg attgtgctat caccgcccaa gcccactgct tcgaaactgt tgaagagaat      1860
     ctgtccaaag cattaagaga aatgtcagct tactacaggg agaatcaatt gagaccaaat      1920
     cctgggaaaa cacagacttg tgctttccac ctcaaaaaca ggcaggcagc tagaaccctc      1980
     aaaattacct gggaaaatac cacactagaa cactgtacat atcccaaata cctaggagtc      2040
     accctggacc gtgcattaac ctacaagagg cactgcctga atactaagca aaaagtggca      2100
     gctagaaaca atgtcatcag aaagctaaca ggcacaacat ggggagcaca ccccaacact      2160
     gtaagaacct cttccctagc actaagttac tctgccggag aatatgcaag tccagtgtgg      2220
     ttcaaatcca gccatgccaa aatagtagat gttgctctta acgatacttg tcgcatcatc      2280
     actggatgcc taaagcccac tcctctgaat aaactgtaca gtcttgcggg cattgcacct      2340
     cccgacatcc gccgagaggt agcagcaaaa agtgagaggg gaaaatcaga aacttctgaa      2400
     gcccatcccc tatatggaca tcaaccagca aaccaacgac taaaatccag gaagagcttc      2460
     cttagatcta cggaggctct agttgggaca tcgcagcaat gccgaaccga actatggcgt      2520
     gcaaggtata ccggtactgc aggatggttt acaccatgtg aaaaactacc acccggctac      2580
     acagagaagt ggagtacatg gagatcactc aacagactac gttcaggtgt cacaaaatgt      2640
     aagagtaatc tggttaaatg gggcttccta gtggagtcgc cactctgtga atgtggagca      2700
     acgcagacga cctcccacct gctccagtgt acccagtgtc cagcaacatg cacaccagaa      2760
     gatctactac atgcaacacc aaatgcaata caggtcgcta acttctgggc atcaaaagtg      2820
     taaataattg tcttgtaaat atgatgtatt cacataacat gtaaatattg tacattagtt      2880
     tatacattgt aagtgcttct gacacgaata aataaataaa taa                        2923
//
ID   Vingi-17_LMi repbase;    DNA;    INV; 2462 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-17_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2462
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3511-3511 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           68..2380
FT                 /product="Vingi-17_LMi_1p"
FT                 /translation="PCSKYTAQTHQVRNLGSNKTTDRRKFNFRKANWQKFT
FT                 EMMDAAVPITEPSPDSSYLAFVEAVRRCSRSPIPRGCRTSYIPGLTSELSA
FT                 QFTEYKELSEEDPFGETALAARNKLITSLKESKSNSWIKTIEELDLTRNSH
FT                 KAWRLLRQLNNDPTKSTAHCNITANQIAHQLLLNGKGNHRIKVPKIHQEAQ
FT                 EQTRDLTLPFEISELNKAIKDSKTGKAPGLYDIRMEQIKNFGPAKRKWSRQ
FT                 LFNNCMNQCQIPKIWLAKEVIPLPKPGKEANHPKNSRPISLLSHLSILFER
FT                 MILNRILPVIDPLLIPEQAGFRPNRSCTVQLLNLTQFIEDGFETQQVMGVV
FT                 FVDLTAACDTVHHRLLHVKLHNMIKNGHLVRLISNLLQNRRIFVEFQGQRS
FT                 RWRVQKNGLPQGSVLAPLLFNIYTNDQPSTPGTRKFLYADDLALATQNICF
FT                 ETVERNLTSALRTLSSYYSQNQLRPNPSKTQVCAFHLRNREANRELHIEWS
FT                 GIQLQHYHTPKYLGVTLDRSLTFKTHCKNTKMKISTRNNLIRKLAGTQWGS
FT                 HPQTIRSSAMALCFSTAEYASPVWYRSSHARQVDTALNETCRLITGCLKPT
FT                 PTEKLYYLAGIAPPSVRREVAANKERLKVEVNSAHPLHGYNPPQQRLSSRK
FT                 NFLRTSEKLTVSPEKARLELWKKMTPHLHGWMPEAEELPPGHNENWLVWKA
FT                 LNRLRSGVGRSRDNLKRWGFKTEDTSCDCGEQQTTSHMLQCPLVPTSCTKT
FT                 DLLQATPNALEVAKYWAHVI"
XX
SQ   Sequence 2462 BP; 804 A; 584 C; 504 G; 570 T; 0 other;
     gatacaatcc tgatctgata ttctgtagcg agaacatctc acaacagtgc ataaaaactg        60
     tctgtaaccc tgttccaaat acacagcaca gacccatcag gtgcgaaatt taggcagcaa       120
     taagaccaca gacagaagga agtttaactt caggaaagcc aattggcaaa agttcacaga       180
     aatgatggac gctgcagttc ccattacaga gccttcacct gactcatcat atcttgcctt       240
     tgtggaggct gtaaggagat gttccagaag tcccattcct cggggttgtc gaacatcata       300
     cattcctggt ctaacgtcag aactcagtgc tcaatttaca gagtataagg aactatctga       360
     agaagaccct ttcggggaga cagcactggc ggctaggaat aaacttatta catctctgaa       420
     agaatccaaa agtaattctt ggattaaaac tatagaagaa cttgacctaa ccaggaacag       480
     ccataaagcg tggagattat tgagacagct caataatgac ccaaccaaat ccacagcaca       540
     ctgcaacatc actgcaaatc agatagcaca ccaactgctc ttgaatggga aaggaaacca       600
     cagaatcaaa gtacctaaaa tacaccaaga ggcccaagaa caaacaaggg atctgactct       660
     tccattcgag atatctgaat taaacaaagc cattaaggac agtaaaactg gtaaagcacc       720
     cggcttatat gacattcgta tggagcaaat taagaacttt ggtcctgcaa aaagaaaatg       780
     gagcaggcag cttttcaaca attgcatgaa tcagtgccaa atacctaaga tctggctggc       840
     gaaagaggtg atacctcttc cgaaacctgg aaaggaagca aatcatccca agaattccag       900
     gccaattagc ctcttgagtc acctatctat actgtttgaa cgcatgattt tgaatagaat       960
     cctaccagta atagaccctc ttcttatacc tgaacaagca ggattccgac caaacagaag      1020
     ctgcacagtg caacttttga atctcactca gtttatagag gatggttttg aaacccaaca      1080
     agtaatgggc gttgtcttcg tggatcttac agcagcgtgt gatactgtcc atcaccggtt      1140
     acttcatgtc aaattgcaca acatgatcaa gaacggccac ctagtaagac taatcagcaa      1200
     cctcctccaa aaccgcagga tttttgttga atttcaagga caacgcagtc gctggagagt      1260
     gcagaaaaat ggtttacctc agggaagcgt cttggctcca cttctcttta acatctatac      1320
     caacgaccag ccatcgaccc caggcacgag gaaatttcta tacgctgatg acttagccct      1380
     tgctacgcag aatatttgct ttgaaactgt ggaaagaaat ctgacaagtg cacttagaac      1440
     actgtcaagt tactacagtc agaaccaact cagaccaaac ccttcgaaga cacaagtgtg      1500
     tgcctttcac ttaaggaaca gggaagctaa tcgtgagcta catatagaat ggtcaggtat      1560
     ccaattgcag cattatcaca cccctaaata cttgggtgtc actctcgata ggtctctgac      1620
     attcaaaact cactgcaaga ataccaaaat gaaaatctcc acgcgaaata acctaattcg      1680
     caaactagcg gggacacagt ggggctcaca tccacagact atccgctctt ctgcaatggc      1740
     actgtgcttt tctactgccg aatatgcttc cccagtctgg tacaggtcat ctcatgccag      1800
     acaagtagac actgctctca atgaaacctg caggttgatc actggttgtt taaaacctac      1860
     tccaaccgag aagctttact atctggctgg aatagcacca ccaagtgtac gcagagaagt      1920
     ggctgccaac aaggagagac tgaaagtgga agtgaacagt gcccacccac tgcacggata      1980
     taatccacca cagcaacggc tgagctcgcg aaagaacttc ctaaggacat ctgagaaact      2040
     caccgtttca ccagagaagg caaggctgga gttatggaag aagatgacgc ctcaccttca      2100
     tggatggatg cctgaagccg aagaactacc acctggacac aatgaaaact ggctcgtgtg      2160
     gaaagctttg aacagattac gatcaggagt tggacgatcc cgagacaact tgaagagatg      2220
     gggtttcaag acagaagaca cttcctgtga ctgtggagaa caacaaacca caagccatat      2280
     gctccagtgc cctttggtcc ctacatcctg cacaaagact gatctcctgc aagccactcc      2340
     aaacgccttg gaggttgcga agtattgggc acatgtaata taattacaat tgtacctatt      2400
     tatcaattta tgatatgtat ggctactgta aatttgtatg tttctgactc gagaataaaa      2460
     aa                                                                     2462
//
ID   Vingi-18_LMi repbase;    DNA;    INV; 3108 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-18_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3108
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3512-3512 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(417..776,686..1066,1039..1227,1209..1397,
FT                 1413..1559,1541..3049)
FT                 /product="Vingi-18_LMi_1p"
FT                 /translation="FKNCQSVQASGCELGSYSTASFDHPCIYTGDFNSHHT
FT                 NWRYDTADVNGETLVQWAEITNMHLVFDVKDKGTFHSARWNKDYNPDLTFV
FT                 SKDRLDQPLSTTLLFCPTSQTVNTDLLWWKLVRSAGPTTQYHSFVLPNLPN
FT                 SQHRPVMVEIGLKIPLVNSMPLPRWNFQRANWDGFTKDLDSSLAAENLQPT
FT                 ANNYDKFVKLVIKAAKSNIPRGYRKEYVPGWNEESEALYQEYQSSGNKQWA
FT                 HSYSTPTVGSQLLHSLNKNKREKREATLKELNFXKSSRKAWRILNGLTGKQ
FT                 HPKKPHPKLNPELLPTGSIIANRIVDLTRQRGTESYQIVKCNSKLKQCPEK
FT                 RAAFQALLHSGVEVQLKTENQQGCWSRQHLEHGPVLHMLAPSSHLHTQENR
FT                 LPRQFKLSKVIAILKPGKPEDSPKITDQPENYRPIALLSCTFKLLERIILT
FT                 RIAPFIEAVTPPEQAGFRHGRSCTDQVLALTAHIEEGFQRQLKSTAVFIDL
FT                 TGAYDTVWRQGLIYKLLQVVPSRGIVDLISSMLSERQFEVFLGSTKSHKRK
FT                 LNNGLPQGSVLAPVLFNLYIHDIPTTTSTKFMYADDIALVAQSNNFEDGEQ
FT                 ILTEDLKKMSTFFKTWRLIPSTTKTEVSCFHLANRAANYKPRVLFNGQKLR
FT                 YNPFPKYLGVTLDRALSYKEHITKLSHKVAARNNILHKLSGTSWGASADCL
FT                 RLSAISLVYSAAEYCAPVWLESAHVKKVDTKLNDAMRCITGTIKSTPCHWL
FT                 SMLSNIPPPHLRRKQALLREAKKIFASPSLPLHQEFCHPSQQRLQSRRPVS
FT                 VTAGQLIADGFDLNESWRHEWSTKTLGTSAHHLDPTKKPNGFDLPRKFWCR
FT                 INRLRTGHGCCNYFRHKWGWISSPMCECNLEEQTIEHLVQRCPLHSYRGIP
FT                 DDLFALTPGLTEWLTRTDFKV"
XX
SQ   Sequence 3108 BP; 1015 A; 730 C; 621 G; 740 T; 2 other;
     ttaaattacc ctacagaccc ccgtggtgct aaacgagcaa cagcgttaaa ggtgacatac        60
     aatatgccca gaaacgtgac aagtaacggc tctctcagaa ccatcaaact agagacgaga       120
     aacaaagtcc acattatgca actaaatatt gaaggcataa gttctgccaa atgccagtat       180
     ctgcaaaaac aactgcatga cctkaacatt gatgttgtta atattcaaga aacccatacc       240
     aaagacgaac aggaccttca gcgtagagga cgaatacccg gttatacact ggtcgaagct       300
     atccaccatc cacaatatgg gatagccact tatgtgaagt caagtttaaa tggagtgcaa       360
     gtaattggtt gtacagaagt tggctacatt tatacaatag caattcagat aaatgattta       420
     aaaattgtca atctgtacaa gcctccgggt gtgaactggg ctcctacagt actgccagtt       480
     ttgaccaccc ttgtatatat actggagact tcaacagcca tcacacaaat tggagatatg       540
     acaccgcgga tgtgaatgga gagaccctag ttcaatgggc agaaattacc aatatgcatt       600
     tggtttttga tgtaaaagac aagggaacct tccactctgc acgctggaat aaggattaca       660
     acccagactt gacatttgtg tctaaagatc ggctggacca accactcagt accactcttt       720
     tgttctgccc aacctcccaa acagtcaaca ccgacctgtt atggtggaaa ttggtttgaa       780
     aattcccctt gtaaactcaa tgcccttacc gagatggaac ttccaacgag ccaactggga       840
     tggattcaca aaagaccttg actccagttt agctgcggag aaccttcaac cgacagcaaa       900
     taactacgac aaatttgtta aactagttat caaagctgct aagtccaaca ttcctagggg       960
     ctacagaaag gaatatgtac ctggatggaa tgaagaaagt gaggccctat accaagaata      1020
     ccaaagttct ggaaataaac agtgggctca cagctactcc actccttaaa caagaacaaa      1080
     cgagagaaac gggaagcaac actcaaagaa ttgaacttck caaagtcaag caggaaagcc      1140
     tggagaatct taaatgggct aactggcaaa caacacccta aaaagccgca tcctaaactg      1200
     aatcctgaat tattgccaac aggatcgtag acctcacaag gcaaagaggg acagaatcat      1260
     accagatagt aaaatgtaac tctaaactca agcagtgccc cgagaaacga gccgctttcc      1320
     aggcccttct ccacagtgga gtggaagtgc aattaaaaac tgaaaaccag caaggctgct      1380
     ggtcccgaca acatctataa tgaatttatt aagaacatgg gcccgtattg catatgctgg      1440
     ctccttcttc tcacttacat actcaagaga acagattgcc caggcaattc aaattatcaa      1500
     aagttatagc cattctcaaa cccggcaaac ctgaagatag cccgaaaatt accgaccaat      1560
     agcactgctt agttgcacat tcaagctcct tgaacgaatc atcctaacga gaatagcacc      1620
     tttcattgaa gctgtcacgc ctccggaaca agctggattc cgacatggac gcagctgcac      1680
     cgatcaagtt cttgctctaa ctgcacacat cgaagaaggt tttcaaagac aactgaaatc      1740
     aacagccgtt ttcatcgact tgactggggc atatgacact gtttggagac aaggacttat      1800
     ctacaaacta ttgcaagttg taccaagtcg aggaatcgtg gacctaatat ctagtatgct      1860
     tagtgaaaga caattcgaag tcttcctcgg cagcactaaa agccacaaac gaaaactaaa      1920
     taacggtcta ccacagggat ctgttctagc accagtgctc ttcaatttgt acatacatga      1980
     tataccaacc acaacatcaa ctaagttcat gtatgctgac gacatcgcac tggtagcaca      2040
     gagtaataac ttcgaagacg gcgaacaaat tcttacagag gatctcaaga agatgtcaac      2100
     tttctttaag acctggagat tgatccccag cactacaaaa actgaagtct cttgtttcca      2160
     tctagcgaat cgtgctgcaa actacaaacc aagagtacta ttcaatggac aaaagctgag      2220
     gtacaatcct tttccaaaat accttggagt cactttagat agagccctga gctacaaaga      2280
     gcacattact aagctttccc acaaagtcgc cgcaagaaac aacatattgc ataagctcag      2340
     tggtacatcc tggggagcct ctgctgactg tttacgctta tctgccatca gtcttgtcta      2400
     ctcggctgct gagtactgtg cacccgtctg gttggaaagc gcacatgtga agaaggtaga      2460
     cacgaaattg aatgatgcaa tgcgttgcat tactggtacc atcaaatcaa ctccatgtca      2520
     ctggttatct atgctgagta acatccctcc acctcactta aggaggaagc aagctctact      2580
     aagggaagct aagaaaatct ttgcatcacc ctctctgcca ttgcaccaag aattctgcca      2640
     tccatcacag cagcgactgc aatcaagaag accagtaagt gtcactgcgg ggcaactcat      2700
     tgctgatgga tttgacctaa atgaaagctg gaggcatgag tggtcaacaa aaacattggg      2760
     aacaagtgcc caccatcttg atcccacaaa gaagccaaac ggttttgacc taccgaggaa      2820
     attctggtgt cgcatcaaca ggttgaggac tggacatggt tgctgcaatt acttcaggca      2880
     caagtggggc tggatcagtt caccgatgtg tgagtgtaac ctggaagaac agacgatcga      2940
     acatctggtc caacgctgtc ctcttcattc gtaccgtggc attcctgacg atttgttcgc      3000
     tctcacaccc ggtttaactg aatggttgac aagaacggac tttaaagttt gattttacct      3060
     tgttatgtat aattgtatat tgtataaaat taccatacga ttaaataa                   3108
//
ID   Vingi-19_LMi repbase;    DNA;    INV; 3170 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-19_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3170
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3513-3513 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(348..587,506..3064)
FT                 /product="Vingi-19_LMi_1p"
FT                 /translation="MATLVKNEILRNVDTITPPTEHVIGIKLGELTLYNVY
FT                 KPPSQKWPVDVLPKANPQQFMLAISTPNIPDGVTRDPQLKALDPPAVYAGD
FT                 FNSQHTRWGYPRSSAEGIGLNDWADNQDLHLLFDAKDKATFKSKAWGTTST
FT                 PDLTFVTRGATGLPVQGTRRVVEAFPRSQHHPVIVEIGLSIPVIKSPPIPR
FT                 WNLRKADWNKYRCFVEKTINRIPPKPENYKRFTNLLHKAALNAIPRGSRKE
FT                 YTPCWTKECETLMEEFEKCGDTETADRLINAMNEERRSRWKEAMENLDFTH
FT                 SSRKSWGLLRKLGGATIPQRPSLGTTASEISAVLKHTSKIQLKTAEKKEVS
FT                 RDLSNLLVHNPTNMDIVKEVETEEITQALKLMKKGKAAGPDEILPEFLKEL
FT                 GTLGRRWLAKLCTECISTGALPKIWKEAKVIAVLKPGKTGDNPKNYRPISL
FT                 LCTSYKLFERILLTRLTPYIEANLPTYQAGFRAGRNCCDQVLSLTTYTEKG
FT                 FQNKMKTGLVLIDLTSAYDTVWIEGLLLKLTRIIKCKQTYTLLKNMLTGRK
FT                 IKVSLHGTNSKSVVLNNGLPQGSALAPALFNLYIADLPETKSRKFAYADDL
FT                 AIAYQSKNFNDLNETLNADLKVLNTYYSKWHLHPNPNKTTSTIMHLNNREA
FT                 HTKLQLTMNGQQIRHENKPKYLGVKLDRTLSYNAHLEDTKQKLKSRNAILS
FT                 KLAGTTWGCGASTLRTSGLALVYSVAEYCSPVWMRSAHVAKVDVQLRETMR
FT                 IISGTLRATPCAWLPVLANIEPPEIRRSQLAIRTHQKILGNLDLPIHEDLR
FT                 ATDRLKSRTAFWKTSEELQEFNSKTAWKELWATSAPKNSNLVDDPNKKIEG
FT                 FSLPRKLWTTLNRVRTGVGRCKQLMKKWGLTDSSECECGETQTMDHLLACE
FT                 VYGYNGDLKDIHRLSDSALKWLEKICNVV"
XX
SQ   Sequence 3170 BP; 1075 A; 748 C; 706 G; 640 T; 1 other;
     gggtacgacg tgtagacaac ctccccgatg gtgtaccctg ggcgctgtaa catgggacag        60
     cggcgaaaag tctacacaac tatggcggcc ggacgcacaa atgcctcccg gtccactcaa       120
     aggcaaatgg agcaagcaag gaactttaac atgaagagac tgaatgtatg tcatttcaac       180
     atagaagact acacaaggac gaagggagaa atccttgaaa aaattttaac agagaacaag       240
     taagtgtcgt acttctacaa gagacccacc tcacagatga aactatcgac cgactcaaaa       300
     taccgggatt cactaatgtg agctacattg gccacgacaa gcgtggtatg gccaccctag       360
     tgaagaatga aatcctgagg aatgtagaca caataacgcc accaacagaa cacgtgatag       420
     gcataaagct kggagaactg acgctgtata atgtctataa acctccatca cagaaatggc       480
     cagtagatgt cttacccaag gctaaccccc agcagtttat gctggcgatt tcaactccca       540
     acataccaga tggggttacc cgagatcctc agctgaaggc attggactaa atgactgggc       600
     agacaaccag gacctacacc tactgttcga cgctaaggac aaagccacct tcaaatcaaa       660
     agcttggggc acaacatcca cacctgacct aaccttcgta acacgtggag caacaggatt       720
     acccgtgcaa ggaacgagga gggtcgtaga ggcttttcca cgaagccaac accacccagt       780
     aatagtagag atcggactat caatcccagt cataaaaagt cctccaatcc cccgctggaa       840
     tctcaggaaa gctgactgga ataaatacag atgcttcgtc gagaagacga taaatcggat       900
     accaccgaaa cctgagaact acaaaagatt cacaaacctg ttacacaaag cagccttaaa       960
     tgctattcca cgagggtcaa ggaaggaata cactccctgc tggacgaaag agtgtgaaac      1020
     actaatggag gaatttgaga agtgtgggga cactgagact gctgaccgac tgataaacgc      1080
     catgaatgag gaacgaagga gcagatggaa agaggcaatg gaaaaccttg atttcactca      1140
     ttctagcaga aagagctggg ggctgttgag aaaattaggc ggcgccacaa tacctcagag      1200
     gccgtctctt ggcaccactg cctctgagat ctcagctgtc ctgaaacata cctccaaaat      1260
     ccaactaaag acagctgaaa agaaagaggt ttccagagac ctaagcaatc tattggtcca      1320
     taatccaacc aacatggaca ttgtgaaaga agtggagaca gaagagatta cacaggccct      1380
     gaagctaatg aagaaaggaa aagcagccgg acctgacgag atcctgccag aattcttgaa      1440
     ggaactggga actctaggaa gaaggtggct cgccaaactc tgcacggaat gtatcagcac      1500
     gggcgctctc cccaagatct ggaaagaagc aaaagtcatc gctgtgctga aacccggaaa      1560
     gactggagat aacccaaaga actacagacc aatatccctg ctatgtacct cctataaatt      1620
     atttgagaga atattactga ctagattaac tccgtacatt gaggccaacc ttccaacata      1680
     ccaagccggt tttcgagcag gcagaaactg ttgcgatcag gtgctgtccc ttacaaccta      1740
     cactgagaaa ggcttccaaa acaagatgaa aactggactg gttctcatag atcttacatc      1800
     agcttatgat acagtgtgga tcgaaggact actgctcaag ctaaccagaa tcattaaatg      1860
     caaacagacc tacacgttac tcaagaacat gttaacaggc agaaaaatca aggtctctct      1920
     tcatggcacg aacagcaaga gtgtggttct gaataacggt ctgccacagg gctcggcact      1980
     agcacccgct ctgttcaatc tgtatatagc tgacctacca gaaaccaaat cacgtaaatt      2040
     tgcatacgct gacgacctgg ccatcgcata ccaaagtaaa aatttcaacg atctcaatga      2100
     aacattgaat gcagacctca aagtcctgaa cacatattac tccaagtggc acctacaccc      2160
     aaaccccaac aaaacaacca gcaccataat gcaccttaac aacagagaag cacatacaaa      2220
     attacagctc actatgaacg gtcagcagat tagacatgag aacaagccta aatacttggg      2280
     tgtgaaatta gatcgcactc tatcatacaa cgcacattta gaggacacaa aacagaaact      2340
     aaaatcccgc aatgctatcc tatcgaaact agcgggaacg acttggggat gtggagcgag      2400
     cactttgagg acatcaggac tagctcttgt ctacagcgta gctgaatatt gctcgccagt      2460
     ctggatgaga agcgcacatg tagctaaggt ggacgtccag ctgagggaga ctatgcgaat      2520
     aatctcaggt acactcaggg ccaccccctg tgcttggctc cctgtccttg ccaacataga      2580
     gccccctgag atcaggcgat cacagctagc cataagaacc caccaaaaaa tcctaggcaa      2640
     cctggaccta cctatccatg aagatctaag agctacagac aggcttaaat ccaggacagc      2700
     tttttggaaa accagcgaag agcttcaaga gttcaactcg aaaacagcct ggaaagagct      2760
     gtgggctaca agtgcaccca agaacagcaa tttggtggat gaccccaaca aaaagatcga      2820
     agggttcagt cttccaagaa aactgtggac aactttgaac cgcgtgagaa caggtgtcgg      2880
     cagatgtaag caattaatga agaaatgggg cctgacagac agctctgaat gtgagtgtgg      2940
     tgaaacccag acaatggacc atttactcgc gtgtgaagtg tacggttata atggtgactt      3000
     gaaagacata cacagactca gtgactcggc cttaaagtgg cttgagaaaa tttgtaatgt      3060
     agtttagtac tgtaagagcc ttgtattgtt agaatagctg tataagaaca atgtaattaa      3120
     ctaaagaata tttgcctttg tatatgccga acgagtaaat aaaataaata                 3170
//
ID   Vingi-1N1_BM repbase;    DNA;    INV; 221 BP.
XX
AC   .
XX
DT   17-AUG-2010 (Rel. 15.08, Created)
DT   17-AUG-2010 (Rel. 15.08, Last updated, Version 3)
XX
DE   A family of non-autonomous Vingi non-LTR retrotransposons -
DE   consensus sequence.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; Vingi-1_BM; Vingi-1N1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-221
RA   Kojima K.K., Kapitonov V.V. and Jurka J.;
RT   "Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR
RT   Retrotransposons in Hedgehogs.";
RL   Molecular Biology and Evolution 28(1), 17-20 (2011).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 221 BP; 71 A; 59 C; 42 G; 49 T; 0 other;
     gggggtcgaa gttgcataac gtccgtagga gattacccac cgctacccta cacgtgaccc        60
     ctgggtggtg ctaatagtgc aacaacctgg caaccgaact gtcctcctga ggatctcccg       120
     gttccaacta cactgcgtca attataaaac cctaatcaca aactgtaaat ttcaattata       180
     accacgcagt gtaaacgaat gccatacgat aaataaataa a                           221
//
ID   Vingi-1_APis repbase;    DNA;    INV; 2702 BP.
XX
AC   .
XX
DT   01-FEB-2010 (Rel. 15.02, Created)
DT   17-AUG-2010 (Rel. 15.12, Last updated, Version 4)
XX
DE   A family of Vingi non-LTR retrotransposons from Acyrthosiphon
DE   pisum.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element; Ingi-1_APis;
KW   Vingi-1_APis.
XX
NM   Ingi-1_APis; Vingi-1_APis.
XX
OS   Acyrthosiphon pisum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.
XX
RN   [1]
RP   1-2702
RA   Kojima K. and Jurka J.;
RT   "Ingi non-LTR retrotransposons from insects.";
RL   Repbase Reports 10(2), 147-147 (2010).
XX
RN   [2]
RP   1-2702
RA   Kojima K.K., Kapitonov V.V. and Jurka J.;
RT   "Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR
RT   Retrotransposons in Hedgehogs.";
RL   Molecular Biology and Evolution 28(1), 17-20 (2011).
XX
RN   [3]
RG   International Aphid Genomics Consortium;
RT   "Genome sequence of the pea aphid Acyrthosiphon pisum.";
RL   PLoS Biol 8(2), e1000313-e1000313 (2010).
XX
DR   [3] (Consensus)
XX
CC   Originally classified as Ingi [1] and re-classified as Vingi [2].
CC   There are only 5 sequences with >90% identity to consensus in the
CC   aphid genome. This consensus is likely 5'-truncated. The 3'
CC   termini are composed by (TAC)n microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           466..2700
FT                 /product="Vingi-1_APis_1p"
FT                 /note="includes a part of endonuclease domain, and
FT                 a complete reverse transcriptase domain."
FT                 /translation="IYKANKFRKPKKKIVIGDFNSHNSAWGYNETNEDGEE
FT                 VEKWTEANDLTLVHYTKLPSSFNSGRWRRGYNPDIIFVSNNIKQQCKKKVE
FT                 APIPNSQHRPITCQIKAIIHPENVPMIRRYNFKKANWDNFKTQLDTEINKI
FT                 TPIPENYGQFSNLVKNISKQNIPRGCRTQYIPGMGKENKELLENYINQFNN
FT                 DPFAEETIITGESLVEKLSEARREKWRSLISETNMTQNSSKAWRMLRNLGN
FT                 DPKNAESHINVTPNEIAHQLLKNGKCPGIKKVKPKIGREPKNEANLLQTPF
FT                 TLEELDVAMARMKEKKAPGLDEIRTEQIKNFG*QTKRWLLELYNNCIKCVK
FT                 IPVIWRKSRITALIKPVKQPTEANNFRPISLLCHTYKLPERLILXRINDIV
FT                 DKSLINEQAGFRGGKSCTGQILNLTQNIENGYEEKLVTGAVFIDLTAAYDT
FT                 INHRILFKKVYEITRDYNLTSFIAEMLRXRRYFVELQGKKSRWRTXKNGLA
FT                 QGSVLAPLLFNIYTNDQPTPLGTQRFXYXDDLALTAQNHSFGXIESTLNNA
FT                 LEEMSIYYKKNWLKPNPXKTQVCTFHLRNKEAKRKLRIIWEDVEIENTEYP
FT                 KYLGVTLDRALSFKLHCGNVKQKTHARNNLIRRLTGTSWXADPNTVRTSAL
FT                 ALCYSTAEYAAPVWARSCHAKKVDTALNETCRIISGCLKPTPVEEIQVLSG
FT                 IAPPDIRREIASEIERHKQQNDPRHPLHGKSPPQPRLKSRKSFLT"
XX
SQ   Sequence 2702 BP; 1094 A; 588 C; 488 G; 523 T; 9 other;
     gggggcatgg taagagcctg cacgcggcgc cccctgtata gcgatatttc taaaccagaa        60
     tttatcgcta accaatctta ccaactccgg acggatctca atgtcaacca aaacgccaaa       120
     acggttcttt tcaggaccag ccctcataac gacttcaata aatatcgaag gattctcaaa       180
     caataaaagc gacatcctac aagaactatg ccaaaaaaat acatgcgacg ttatatgcgt       240
     ccaagaaaca caccgagaca agtacaacat ccgtccgaag ataaagggaa tgaagttggc       300
     aatatagaga ccacataaga aatacggcag tacgatattt gtaagagata atctaaagat       360
     cctctcaaca agtcgtacag aaacaaacga catagaaatc ctcacagtag aacttacaaa       420
     ctgcactgtc acatcagtat acaaaccacc taatatccca tttaaattta caaagctaac       480
     aaatttcgaa aaccaaagaa aaaaattgta attggcgatt tcaacagtca caacagcgcc       540
     tggggctata acgaaacaaa cgaagatgga gaagaagtag agaaatggac agaggcaaat       600
     gacctaacat tggtacacta tacaaagctc ccatcgtcgt ttaatagcgg cagatggaga       660
     agagggtata atccagacat aatctttgta agcaacaata tcaaacaaca atgcaaaaag       720
     aaagtcgaag caccaatacc aaattcccag cacagaccaa taacctgtca aataaaggct       780
     attatacacc cagaaaacgt accgatgata agacgctata atttcaaaaa agccaactgg       840
     gacaatttta agacacaact ggacactgaa atcaacaaaa tcactccaat acctgaaaat       900
     tatggccaat tctcaaactt agtaaagaac atatcaaaac aaaatatacc aaggggctgc       960
     agaacacagt atatcccggg aatggggaaa gaaaacaaag aactacttga gaactatatc      1020
     aaccaattta acaatgatcc ttttgctgaa gaaacaatta taaccggaga atccttagtg      1080
     gaaaaactgt cagaagcacg acgagaaaaa tggagatcac taataagtga aacaaacatg      1140
     actcaaaaca gctcaaaagc atggagaatg ctgagaaacc tgggaaatga cccaaaaaat      1200
     gcagaatcac atataaacgt tacaccaaat gaaattgctc accaactcct aaaaaatgga      1260
     aaatgccctg gcattaagaa agtgaagcca aaaataggca gagaaccaaa aaacgaagcc      1320
     aacctactac aaactccttt cacgttagaa gagctcgatg tggcaatggc acggatgaaa      1380
     gaaaaaaaag caccaggtct agatgaaatc agaaccgagc agattaagaa ctttggataa      1440
     caaaccaaaa gatggctatt agaattgtac aacaactgca taaaatgcgt aaagatacca      1500
     gtaatatgga gaaaaagccg aataacagca ctaataaaac cggttaagca acccacggag      1560
     gcgaacaatt ttcgcccaat ctccctctta tgccacacat acaagttgcc agaaagatta      1620
     atactcaama gaataaacga catagtggac aaatcactta taaacgaaca agccggtttc      1680
     agaggaggaa agtcatgcac tggtcagata ctgaacctga cgcaaaatat tgaaaatgga      1740
     tacgaggaaa aactggtgac tggcgcggtt ttcatagacc taacagcggc atatgatacg      1800
     attaaccaca gaattctttt caaaaaagtg tacgaaataa caagggacta caacttaacg      1860
     tccttcatcg ctgaaatgct aagaaawaga agatacttcg tggagttgca aggaaagaaa      1920
     agccgctgga ggactcwaaa aaatggactt gcacaaggta gcgtattagc acctttgcta      1980
     tttaacatat ataccaacga tcagccaaca ccattaggaa cccagcgttt cmtatacgmt      2040
     gatgatctag cgctcactgc tcagaatcac tcgtttggaw atatagaaag cactcttaac      2100
     aacgcactag aggaaatgtc aatttattac aaaaaaaatt ggttaaaacc aaaccccaam      2160
     aaaacccaag tatgcacttt tcatctaaga aacaaagaag caaaacgaaa attaagaata      2220
     atatgggaag atgtwgagat tgaaaatacc gaatacccaa aatacctcgg tgtcacacta      2280
     gaccgagcct tatcattcaa acttcattgc ggtaacgtaa aacaaaaaac ccacgcgaga      2340
     aacaacctga ttagaaggct cacaggaaca tcatggkgag cagacccaaa tactgtaaga      2400
     acatcagcac tagcactatg ctactcaaca gccgaatatg ctgcccccgt atgggccaga      2460
     tcatgtcacg cgaaaaaagt tgacactgct ttaaacgaaa catgcaggat aatctcagga      2520
     tgcctcaaac caacaccggt cgaggaaata caagtactat caggaatagc cccaccagat      2580
     attaggagag agattgcatc agagatagaa cgacacaaac aacaaaacga tccccggcac      2640
     ccactacatg gaaagagccc gccgcaacca cgacttaaat ccaggaaaag tttccttact      2700
     ac                                                                     2702
//
ID   Vingi-1_BM  repbase;    DNA;    INV; 3206 BP.
XX
AC   .
XX
DT   17-AUG-2010 (Rel. 15.08, Created)
DT   17-AUG-2010 (Rel. 15.08, Last updated, Version 3)
XX
DE   A family of Vingi non-LTR retrotransposons - consensus sequence.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element; Vingi-1_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RP   1-3206
RA   Kojima K.K., Kapitonov V.V. and Jurka J.;
RT   "Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR
RT   Retrotransposons in Hedgehogs.";
RL   Molecular Biology and Evolution 28(1), 17-20 (2011).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           155..3163
FT                 /product="Vingi-1_BM_1p"
FT                 /note="includes endonuclease and reverse
FT                 transcriptase domains and a CCHC zinc-finger
FT                 motif."
FT                 /translation="MPGCARRNASTNQCQMTKDIGPSVRVCSLNIEGITQA
FT                 KTECMLRIAIDNKIDIILLQETHTADLAQLARRGTIPGFRMICATFHPQYG
FT                 TATYIREALLPSASIICTSTDTENIAMSTIQVGEMIVCNLYKPPNSTWPQP
FT                 GLPNYGHPSIVVGDFNSHHTSWGYKNNDANGESVVKWADESSYFLVHCNKD
FT                 KGTVKSARWGREYNLDLAFVSLDCKRRPLQVNRTVLQDFPHSQHRPVLLDI
FT                 GLKILIIQSYPAPRWNFTKADWERYTKTLDDSIRWIPPLRENYERFLKLVL
FT                 STAKKCIPRGYRKQYIPCWTTKTEALWQEFITTSDRNVAHELIESLNEARQ
FT                 AKWESTVQDMNFTHSSRKAWHLLKRFTSGTTGQKSEPKVCPSKIADRIVKL
FT                 SKAPSHKKHTREVRKDLKSLKTDTASDPYFSRPVTADEITASIRAIKGNKA
FT                 CGEDKIFPEFIKDSGPHTRVWLAKFLTNIIDSGKIPLAMKRAKITAILKPG
FT                 KPADSADSYRPIALLSVMYKLLERIILNRISPTIEKHIPQEQAGFRPGRSC
FT                 SDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVWRQGLLYKLLKLIPCI
FT                 KIYNVIEDALTNRPFRVHLGDKSSLSRVLNNGLPQGSVLAPTLFNVYTHDV
FT                 PETLSRKFAYADDLALVAQGRSIETTECHLENDMATLDNYFIRWRLCPNAS
FT                 KTEVCCFHLNNRQANKKPNVTFRGSTLPFNPCPKYLGVTLDRSLTYSAHLN
FT                 NVAAKLRTRNNILQKLTGTTWGASANCLRTSALALVYTTAEYCAPAWLNSS
FT                 HTTVVDTQLNHTMRLITGCLKPTPLHWLPALSSIAPPHLRRTHHLYAEIEK
FT                 ALRRPELPINRDLANFKPTRLKSRNPPALQAHQPHSNWNTNEAWVKEWSAR
FT                 CIPPELFELNPHSRPPGFKEKRPIWCMLNHLRTGVGHCNQLRKRWGWTENE
FT                 SCECGCPEQTIRHIVMECPLTRFAGQVEDLKNVTEEAIDYFTNCKFKL"
XX
SQ   Sequence 3206 BP; 982 A; 898 C; 663 G; 663 T; 0 other;
     gggtcgaagt tgcataacgt ccgtaggaga ttaccccacc gctaccctac acgtgacccc        60
     tgggtggtgc taatagtgaa acaacctggc aaccgaactg tcctcctgag gatctcccgg       120
     ttccaactac actgcgtcaa ttataaaccc taatatgcct ggatgcgctc gaagaaatgc       180
     aagcaccaat cagtgccaaa tgactaaaga cataggacct tccgttcgtg tctgttcttt       240
     aaacatagaa ggcattaccc aggccaaaac tgaatgcatg ctcagaattg ccatagataa       300
     taagattgac atcattctgc tacaagagac ccacactgct gacctcgcgc aactcgctag       360
     aagaggaacg attcccggct tccgcatgat ctgcgctaca ttccatcccc aatacggcac       420
     tgccacatac atacgagagg ccctgctgcc ttcagcttca attatatgca cctccacaga       480
     caccgaaaac atcgctatgt caacgatcca agtgggagaa atgatagttt gtaacctgta       540
     caaacctccg aatagcacat ggccccaacc aggacttcca aactatgggc acccgtccat       600
     tgtagtaggc gactttaata gccaccacac cagctgggga tataaaaata atgatgctaa       660
     cggagaatct gttgtcaagt gggcagatga atccagctac ttcctggtcc actgtaacaa       720
     agacaaaggc accgtcaaat ccgcacgctg gggtcgtgaa tataacctgg acctcgcctt       780
     cgtctccttg gactgcaaac gcagacccct ccaggtgaac agaactgtac tacaagactt       840
     tccacacagc caacaccgcc cagttcttct cgacatcggc ctgaaaatac ttatcataca       900
     atcatatccc gcaccacgct ggaacttcac taaagctgac tgggaacgct atacgaagac       960
     actcgatgat tccattaggt ggataccacc ccttcgggaa aactatgaaa gattcctaaa      1020
     gctagtactt tccacagcta aaaaatgcat tccaagggga taccggaagc aatatatacc      1080
     atgctggact accaaaactg aagctctatg gcaagagttc ataaccacta gcgaccggaa      1140
     tgttgctcac gaactcattg agtctctcaa tgaagcacga caagctaaat gggaaagcac      1200
     agtccaagat atgaacttca cacactcaag ccgtaaagcc tggcacctac ttaaacgctt      1260
     cacttctgga actaccggcc agaagagtga accaaaagta tgccccagta aaattgcgga      1320
     taggattgta aaactgtcta aagcacccag ccacaaaaaa cacacccgtg aggtgcgtaa      1380
     ggatcttaaa tctcttaaga cagacactgc ttcagaccct tattttagcc gtccagttac      1440
     agcagacgag ataactgcca gtatcagagc tattaaggga aacaaagctt gtggagaaga      1500
     caaaatcttt ccagagttca taaaagacag tggaccccac acccgtgtgt ggctcgcgaa      1560
     attcctcacg aatatcattg actctggaaa aatcccactt gcgatgaaac gggcgaagat      1620
     aacggcaata ctcaaacctg gtaagccggc tgacagtgca gatagctatc gccccattgc      1680
     ccttttgagc gtaatgtata agctacttga gcgaatcata cttaaccgca tttcaccaac      1740
     tatagaaaaa catattcctc aagagcaagc tggattccgt ccaggacgca gctgcagcga      1800
     tcaagtgtta gcactgacca cactcttgga gaggggcttt aacgaaaacc tcaagtcgtc      1860
     aactgtattc gtggacctaa cagctgctta cgacacagtg tggcgccagg gactgctgta      1920
     caaactactc aagctgatcc cctgtataaa gatctacaat gttattgagg acgcccttac      1980
     caacagacca ttccgtgtcc atctgggaga caagtctagc ttatccaggg tcctgaacaa      2040
     cggcctcccg cagggttcag tcctcgcacc aacactcttc aacgtgtaca cccacgatgt      2100
     gccagagacg ctctccagga aatttgcgta cgccgacgat ctagctctag tcgcacaagg      2160
     ccgcagtata gagacaacgg aatgtcacct tgaaaacgac atggccacgc ttgataacta      2220
     cttcattcga tggcgtttgt gtccaaatgc ttccaagacg gaagtctgct gtttccacct      2280
     aaataaccga caggctaaca agaaacccaa cgtcaccttt agaggctcca ctctcccctt      2340
     taacccctgt cccaaatatc tgggtgtcac cctagaccgg tctctcacat acagtgccca      2400
     cctgaacaac gtcgcagcga aactgagaac caggaacaat atcctacaaa agctgacagg      2460
     gacaacgtgg ggagcctcag ccaactgtct gaggacatcc gccctggccc tggtatatac      2520
     gacggcagaa tactgcgccc ctgcatggtt aaacagctcc cacactactg tagtcgatac      2580
     gcaactaaac cacaccatgc gcctaatcac ggggtgctta aaaccaaccc ctctgcactg      2640
     gcttccggct ctgagcagca ttgccccacc ccaccttcgc cgcacccacc acctatacgc      2700
     agagatagaa aaggcgctta gacgacccga gctgcctatc aacagggacc tagccaactt      2760
     caaaccgacg agattgaagt cacgaaaccc accggcatta caggcacacc aaccacactc      2820
     caattggaac acaaacgagg cctgggttaa agaatggtca gccagatgta tcccacctga      2880
     actgttcgag ctgaatccac actcccgccc acctggtttc aaagaaaaac gcccaatctg      2940
     gtgcatgctt aaccacctga gaacgggagt tggtcactgt aaccaactgc ggaagagatg      3000
     gggctggacg gaaaacgaaa gctgtgaatg cggatgccca gagcaaacta tacgccacat      3060
     tgtcatggaa tgcccactaa cgagattcgc aggccaagtg gaagatctca aaaatgtaac      3120
     agaagaagct atcgattatt tcacaaactg taaatttaaa ttataaccac gcagtgtaaa      3180
     cgaatgccat acgataaata aataaa                                           3206
//
ID   Vingi-1_BTa repbase;    DNA;    INV; 3135 BP.
XX
AC   .
XX
DT   17-MAY-2018 (Rel. 23.06, Created)
DT   17-MAY-2018 (Rel. 23.06, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon from Bemisia tabaci, consensus.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-1_BTa.
XX
OS   Bemisia tabaci
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
OC   Aleyrodoidea; Aleyrodidae; Aleyrodinae; Bemisia.
XX
RN   [1]
RP   1-3135
RA   Bao W.;
RT   "Non-LTR retrotransposons from Bemisia tabaci.";
RL   Repbase Reports 18(6), 730-730 (2018).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(136..636,531..3092)
FT                 /product="Vingi-1_BTa_1p"
FT                 /translation="MPDQLHTEPSKRPFSRPPLVTTSCNIEGLSVNKQILL
FT                 SDMCNRNKCDILVLQETHRGPNSHRPKIHGMNLVVERPHEQYGSAIFVRPD
FT                 IDVRSCALTCVEDVEILTIELQSCTVTSVYKPPNTAFKFHEPDNFRNQMLT
FT                 SSWVTSTATVQRGDTTKPTTTVRNWRTGLPQSNVNIVLGDFNCHSTAWGYN
FT                 ETNDDGEKLENWVDQVNLKLIHDPKLPASFNSGRWRRGYNPDNIFVSDRIA
FT                 QQTVKQVEEPIPKSQHRAITCYITAAIRPNTVPFKRRFNFKKANWELFTRD
FT                 LDQEISKIKPGIQSYGAFTELVGKISRQHIPRGCRTQYITXLNNISKEALD
FT                 KYEELFNEDPFSEDTIQAGEDLLLSISESRKEKWCNLLQETDMKHNSRKAW
FT                 KLVKSLSGDPTSPQHKYXDVTPNQIAHQLLLNGRTRRKKKDCKIRRKMDEE
FT                 NNFLACPFSIQELQSAIEEMKINKAAGLDDIRPEQIKHFGPKTKAWILAVI
FT                 NSCVKEMQIPKLWRKSRVVALLKPGKDPTEAKNFRPISLLCQLFKVMERMV
FT                 LKRISDHVDEALIKEQAGFRPGRSCCGQILNLTQHIEDGFQRGEVTGVAFL
FT                 DLSAAYDTVNHKLLTKKVYSVTKDYTLAKFIQCMLQNRHFFVTLQTKNSRW
FT                 RRQKNGLAQGSVLAPILFNIYTNDQPVNESVRSFIYADDTAVAAQGKTFEE
FT                 VEEKLNAALEELAEYYEENDLKANPTKSQVCAFHLRNRQANRKLRVSWKGQ
FT                 QLEHSNNPRYLGVVLDRTLTFKEHCHNTKKKVFARNNIVRKLTGSTWGAEP
FT                 HVLRTTGLALSISAAEYAAPVWGRSTHAKQVDIAVNETARIATGCLKPTPT
FT                 EELYPIIGIAPPPIRRQVAAEIERTKQKNDPRHPLHEHQRQRVRLKSRKSF
FT                 IDCTEELSTTPKERRLNLWKNSVPHSKIEPLEEGSLGLNLTFGTWKSLNRL
FT                 RTAVTRCKSNLLRWGFAENELCECGAKQDYNHLLICPNMTKTCTRDDIFSV
FT                 NDEAIYVANYWSGKI"
XX
SQ   Sequence 3135 BP; 1047 A; 764 C; 706 G; 616 T; 2 other;
     gggggacact gcaggagcct ccccgaagat tgcgttcacc actcgaacta ccggaagaac        60
     ctcaagcaat cgggcgtccc ctgggcaacg actaagtcgg ccgatcctgc aaacaccgaa       120
     gcaccaaaac caaagatgcc agatcagctc catacggagc cttcaaaacg gcctttttca       180
     aggccacccc ttgttacaac ttcatgcaat atcgaaggct tatctgtaaa taaacaaatt       240
     ttactgtctg acatgtgcaa tcgcaacaaa tgtgatatct tagtgttaca agaaacccat       300
     agaggaccaa atagtcacag accaaagatc catggaatga atctagtcgt agaaaggccc       360
     cacgagcagt atggaagcgc tatatttgtt aggccagaca ttgacgtacg ctcctgtgcc       420
     ttgacctgcg ttgaggatgt agaaatttta acgatagagc tccaatcctg caccgtcaca       480
     tcagtgtaca aaccacccaa tacagcgttc aaattccacg aaccagataa cttccgcaat       540
     caaatgttaa catcgtcttg ggtgacttca actgccacag tacagcgtgg ggatacaacg       600
     aaaccaacga cgacggtgag aaactggaga actgggtaga ccaagtgaac ctcaaactaa       660
     tacacgatcc aaaattgccc gcatcattta atagcggacg ctggagacga ggatacaacc       720
     cggacaacat ttttgtgtct gacaggatag ctcagcaaac agtgaaacaa gtggaagaac       780
     ccataccaaa atctcaacac cgagcaataa cctgttatat aacggcagca attagaccaa       840
     acacggtccc gttcaaaaga cgcttcaact tcaagaaagc taactgggaa cttttcacac       900
     gagacctgga tcaagaaatc tccaaaataa agcccggaat ccaatcgtat ggagcattca       960
     cagaacttgt aggcaaaatc tcacgacagc acatacccag gggatgtcgc acccaataca      1020
     ttactgsgct aaacaacatc tcgaaggaag ccttagacaa atacgaagaa ctgtttaacg      1080
     aagacccatt ctcggaagat acaatccaag caggcgagga cctattgctc agtatttctg      1140
     agtcgaggaa ggagaagtgg tgcaacctat tacaggaaac cgatatgaag cacaacagca      1200
     ggaaagcatg gaaactagtc aaaagcctca gtggcgaccc aacaagcccc cagcataagt      1260
     atgkagatgt cacaccgaat caaatagcgc accaactgct actcaatgga agaaccaggc      1320
     ggaagaagaa ggactgtaaa atcagaagaa aaatggacga agagaacaac ttcctggcgt      1380
     gtccattctc cattcaagaa cttcagagtg ccatcgagga aatgaaaatc aacaaggcag      1440
     ccggactcga tgacataaga cctgaacaaa tcaaacactt cgggcctaaa acaaaagcgt      1500
     ggatactcgc ggtaataaat agctgtgtca aagagatgca aattcccaaa ctctggagaa      1560
     agtctcgagt tgttgccctt ctgaagcctg gaaaagaccc gacagaagct aaaaacttcc      1620
     ggccaatctc cctcctatgc cagctgttca aagtcatgga gcgaatggtt ctgaaacgaa      1680
     tatcggatca cgtggatgaa gccttaataa aagaacaggc aggtttcagg cctggtcgtt      1740
     catgctgcgg acagatactc aacttgaccc agcatattga agacggtttc cagaggggcg      1800
     aggtgactgg ggttgccttc ctggacctta gtgcagccta cgacacggtc aaccacaagc      1860
     tactgaccaa aaaagtgtat agtgtaacga aagattacac actagccaag ttcattcagt      1920
     gcatgctaca gaacagacac ttctttgtca ccttgcaaac gaagaatagc cgatggagga      1980
     gacagaagaa cggtctcgca caaggtagcg ttttggcccc aatactattc aatatttata      2040
     ccaacgatca gccagttaac gagtccgtgc gaagcttcat ttatgccgac gacacagcag      2100
     tggctgccca aggaaagaca ttcgaggagg tggaggaaaa actcaacgcg gccctggaag      2160
     agcttgccga gtactatgaa gaaaacgacc tcaaggcaaa ccccacaaaa tcccaagtct      2220
     gcgcctttca cctgaggaac cgacaagcta accgaaaact tcgagtaagc tggaaggggc      2280
     aacagctaga gcactcaaat aaccctagat acttaggagt agtcctggat agaacactga      2340
     cgttcaagga gcattgtcat aatacaaaga aaaaagtatt tgctaggaac aacattgtga      2400
     ggaaattgac aggttcgaca tggggagccg aacctcatgt tctacgcact acagggctgg      2460
     cactcagcat ctcggcagcg gaatacgcag caccagtctg gggtagatct acacatgcca      2520
     aacaggtgga tatcgccgta aacgaaaccg cacgcattgc cacaggatgc ctcaaaccaa      2580
     cacctactga ggaactgtac cctattatag ggatagcgcc acctcccatc cgaaggcagg      2640
     tagccgctga aattgaaaga accaaacaga agaatgaccc gagacacccc ttgcatgagc      2700
     atcaaagaca acgggtccgc ctgaaatctc gcaagagttt cattgattgc acggaagaac      2760
     tctccacaac cccgaaagaa cggcgactga acttgtggaa aaattcagta ccacactcga      2820
     agatagaacc actagaggag ggatctcttg gccttaacct gaccttcggg acgtggaagt      2880
     ctcttaatcg gttacgaaca gctgtaacac ggtgtaaatc aaacttgctg aggtggggtt      2940
     tcgctgagaa cgaactatgc gagtgtgggg caaagcaaga ctacaaccac cttctaatct      3000
     gccctaacat gactaaaacc tgcacaaggg acgatatttt tagtgtaaat gacgaagcaa      3060
     tctatgttgc aaattattgg tcagggaaaa tctaatttaa tcttattggt gctatcggac      3120
     acggaagaag aagaa                                                       3135
//
ID   Vingi-1_Hmel repbase;    DNA;    INV; 3145 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a Vingi element from Heliconius melpomene.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3145
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2892
FT                 /product="Vingi-1_Hmel_1p"
FT                 /translation="GCTIGASTWRTLEAARSGNAGPRLTDPVPTMNWNVPK
FT                 ASNCPSQGQTSDHADCDESNLNPYRAALTVISINIEGFSSLKSELLANLCK
FT                 NTACDILCVQETHRDANQSRPYISGMTLIAEIPHEKYGSAMFANPAAIVDA
FT                 ISVATQNDIEIITADFRNCSVTSIYKPPNIPFGPIDIKITDHPAHIIIGDF
FT                 NSHSSSWGYSSTNKDGEAVEAWAEAKNFTLLHDSKLPASFNSRIWHRGYNP
FT                 DLIFTSQNISSLCKKRVHEPIPHTQHRPISCQIQAAITPVVVPFRRRFNFR
FT                 KAKWRAFSEYVESKLIDVEPTPQNYDLFVDIIWESARKHIPRGCRCLYIPG
FT                 LEDQSAKLLSTYESLYSKDPFSEDTILAGEELMRTLVESRKNSWIQLISSV
FT                 DMTHNSKKAWNTIKKLTGDPPNATNSGQVTAXXXXXXXXXXGKPPHRLPRE
FT                 LKPLISPTDNTDAISKPFVLAEIVASIKSLKNGKAAGLDDLTTEQIKHLGP
FT                 VAISWLLAMFNSCLNLCTIPKVWRRAKIIALLKPGKSPDDPKSFRPISLLS
FT                 HTFKLFERMLLNRLTPLLEEHLIPEQAGFRPGKSCTRQTLNLVQAIEDGFE
FT                 NRRITGVVFVDLTAAYDTVNIRRLLVKVHNITNDQGFVRILRDILNNRRFQ
FT                 VHLNRNKSRWRSQKNGLPQGSVLAPALFSIYTNDQPKTPNTRQFLYADDLA
FT                 LAAQAPCFEEVESLLKTALSALDSYYDDNALKPNPSKTQSCAFHLKNREAN
FT                 RPLQISWRGAHIQHCPQPRYLGVILDRSLTFKAHCLYTKQKVCARNNLLRR
FT                 LTRTHWGASPHVLRTTGLALSFSAGEYACPVWHRSAHAKEVDIALNETCRI
FT                 ITGCLKPTPLNKVYPLAGIAPPKVRREVACSVEKMRQEKDPRHPLFGYTAP
FT                 RARLKSRHSFIQATKALDCIPSRARIRLWQTIYSPPSGFVPPQRVPTRRLQ
FT                 LAVANMEVT"
XX
SQ   Sequence 3145 BP; 904 A; 807 C; 650 G; 765 T; 19 other;
     gggtgcacga taggagcctc cacgtggcgc accctggaag cagctaggtc cggtaacgca        60
     gggcctaggc tgactgatcc tgtccccaca atgaattgga atgttccaaa agccagtaac       120
     tgcccttctc agggccaaac aagtgaccac gccgattgtg acgaatctaa ccttaaccct       180
     taccgagcag ctctcacggt aatatctatt aacatcgaag gtttttcttc cctaaaatcc       240
     gaattactcg cgaatctctg taaaaatacc gcttgcgaca ttttgtgcgt ccaggagaca       300
     catagagatg caaaccaatc aagaccctat atctcaggca tgacacttat agccgagatc       360
     ccacatgaaa aatatggaag cgcaatgttt gctaacccag ctgcgattgt cgatgctata       420
     tccgtagcca cccaaaatga tatagaaatt atcaccgctg atttccgaaa ctgtagtgtc       480
     acatcaatct ataaaccccc aaacattccc tttggcccaa tcgacataaa aattactgat       540
     cacccagctc acattattat tggagatttt aatagccata gctcgtcctg gggctattcc       600
     tctactaaca aagatggtga ggcggttgag gcctgggctg aagctaaaaa cttcacccta       660
     ctacatgact ctaaacttcc agcatcattt aatagtcgaa tttggcatcg gggatataat       720
     ccagatctta tatttacaag tcaaaacatc agttccttat gtaaaaagag agttcatgag       780
     cccatcccac acacgcaaca cagacctatt tcctgccaaa ttcaagcagc gataactcct       840
     gttgtggttc cctttagaag acggtttaat ttcaggaaag ccaagtggcg ggccttttct       900
     gagtacgtgg agtctaagct gatagatgta gaaccaaccc cgcagaacta cgatttattt       960
     gtggatatca tctgggaatc agctcgtaag cacatacccc gcggctgtcg gtgcttgtac      1020
     atcccaggcc ttgaggatca gtctgctaag ctgctttcta cctatgaatc gctctactcc      1080
     aaagaccctt tttctgagga caccattctg gctggagagg aacttatgcg gacacttgtt      1140
     gaaagccgaa aaaacagctg gattcagctt atatcttccg ttgacatgac ccataacagc      1200
     aagaaggcat ggaacaccat taaaaagcta actggbgacc ccccaaatgc tacaaactct      1260
     ggtcaagtaa ctgchadbha ddttvcchat hdvbthyttt waawtggaaa gccaccccac      1320
     cgcctgccya gggaactaaa gccacttatc tcaccgactg acaataccga tgccatcagc      1380
     aaaccctttg tactagccga aatagtagca agcattaaat ctttaaaaaa tggaaaagcg      1440
     gctggcttgg acgaccttac tacggaacaa attaaacact tgggtcccgt agctatctca      1500
     tggctattag caatgtttaa ctcatgcctg aatctctgca caatcccaaa ggtctggagg      1560
     cgggccaaaa tcatagctct gttaaaacca ggtaaaagcc cagatgatcc gaaaagtttc      1620
     cgccccatat cgctattaag ccatacattc aaactttttg agaggatgct tttaaaccgc      1680
     ctgacgcctt tacttgagga acacctaatc ccagagcaag ctggttttcg tcctggcaag      1740
     tcctgcacta ggcaaacttt gaatcttgta caggctattg aggacggatt tgaaaacagg      1800
     agaataactg gcgttgtctt tgttgattta acagctgcat acgataccgt caacattcgt      1860
     agactcctag ttaaagttca caacataact aacgatcaag gcttcgtccg catactaaga      1920
     gatatcttaa acaacagaag atttcaggtt caccttaatc gtaacaaaag taggtggcgc      1980
     agtcagaaaa acggcctccc acaggggagt gtcttagccc cggccttatt ttccatttat      2040
     accaacgatc aaccaaaaac tccaaacacc cgtcaattcc tctatgccga tgaccttgct      2100
     ttggctgctc aggcgccatg ttttgaggag gtggaaagtt tgctgaagac agccctaagc      2160
     gcactcgact cttactatga cgataacgcc cttaaaccca acccgtctaa aactcagtcg      2220
     tgtgcgttcc acctgaagaa tcgtgaagca aacaggcctc ttcaaatatc ttggcgaggt      2280
     gctcatattc aacactgtcc acaaccacga tacctgggag ttatactgga caggtcttta      2340
     acatttaaag ctcactgcct gtataccaaa caaaaagtat gtgcaagaaa taatctgctc      2400
     cgtcggctaa cgagaacaca ttggggggca tctccgcacg tacttcgtac aacaggcctc      2460
     gctctatctt tctctgcggg tgaatatgcg tgtccagttt ggcaccgttc cgctcatgca      2520
     aaggaggtgg acatagcatt aaatgagact tgtcgaataa ttactggttg ccttaagccc      2580
     acaccattaa acaaggtcta ccctctggcc ggaatagcgc ctcctaaggt tcgacgtgag      2640
     gtggcatgtt ctgtcgaaaa aatgcgtcag gaaaaagacc ctcggcaccc actctttggc      2700
     tacaccgcac ctcgtgcccg cttgaaaagt cgccacagtt ttattcaagc taccaaagct      2760
     ctagattgca ttccgagtcg cgctaggata cggttatggc agacaatcta ctcgccacct      2820
     tcaggctttg ttccccccca aagagtgcct acccgcaggt tacaacttgc agtggccaac      2880
     atggaagtca cttaatcgtt tacggagcca ggttggccga tgcaaagagc ttctcgtgag      2940
     atgggggtac gaactgaggg atgggtcacc ctgtgactgt ggcgccgatc cacaaacgat      3000
     ggcacactta ctctcctgcc cgaaatgtcc attcacctgc tcacatgacg atctgatgga      3060
     agcaacagat gccgcagtcg acgtggctaa atactggcaa aatrtgatat gaattctcca      3120
     ttcattgaca cgaagaagaa gaaga                                            3145
//
ID   Vingi-1_Pp  repbase;    DNA;    INV; 2912 BP.
XX
AC   .
XX
DT   29-JAN-2010 (Rel. 15.02, Created)
DT   17-AUG-2010 (Rel. 15.09, Last updated, Version 3)
XX
DE   A family of Vingi non-LTR retrotransposons from Phlebotomus
DE   papatasi.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element; Ingi-1_Pp;
KW   Vingi-1_Pp.
XX
NM   Ingi-1_Pp.
XX
OS   Phlebotomus papatasi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Psychodoidea; Psychodidae; Phlebotomus; Phlebotomus.
XX
RN   [1]
RP   1-2912
RA   Kojima K. and Jurka J.;
RT   "Ingi non-LTR retrotransposons from insects.";
RL   Repbase Reports 10(2), 148-148 (2010).
XX
RN   [2]
RP   1-2912
RA   Kojima K.K., Kapitonov V.V. and Jurka J.;
RT   "Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR
RT   Retrotransposons in Hedgehogs.";
RL   Molecular Biology and Evolution 28(1), 17-20 (2011).
XX
DR   [1] (Consensus)
XX
CC   Originally classified as Ingi [1] and re-classified as Vingi [2].
CC   5' terminus is temporarily positioned at the start codon.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2868
FT                 /product="Vingi-1_Pp_1p"
FT                 /note="includes endonuclease and reverse
FT                 transcriptase domains and a CCHC zinc-finger
FT                 motif."
FT                 /translation="MTKEDILCEFCVNFECDVICLQETHRGPTQGRPKING
FT                 MKLVIERPHDKYGSAIFVKSDVDVKSVALTDCDDVEILTVNFEKFSVTSVY
FT                 KPPGTCFQFEEPNNFGNSNAHFVLGDFNCHNILWGYGKNNDDGDALEEWSE
FT                 SKGLTLIHDAKLPASFNSARWQRGYNPDLIFVDEKIAPSCCKNVLPPIPHT
FT                 QHRPIMCQLFAAIKPREVPFRRRFNFSKANWNRFASDVDLSLGDIEPTSEN
FT                 YDRFVEAVKKVSRRHIPRGCRTQYIPGLSSEISSIMSEYSKSFEADPFSDA
FT                 TLELANVLTDAVAESRRERWVSIVESMDLSKNSHRAWRLIRHLNNDPTSVK
FT                 TLPQVTANQIAHTLLMNGKVGSRSAKPKFIRDPTTEVQHLSAPFRVDELVL
FT                 AVKSMKNKKAAGYDGLYSEQVKSFGPRTIDWLLKLFNYCLSHRKIPKAWRK
FT                 AHVVAIPKPGKDINDPKSYRPVSLLCHLFKVFERMLLNRILTVVEEKLISE
FT                 QAGYRPGKSSSNQVLNLTQFIEDGFEEGKITGVAFVDLSAAFDTVNHRVLL
FT                 TKFYKLTSDYGLTQMIGTLLQNRRFFVEFRGQKSRWRLQKNGLPQGSVLAP
FT                 MLFNIYTNDQPLPSPSKAFLYADDLALAVKASTFENVEAHLQTSLIELSKF
FT                 YRENQLRPNPSKTEVCCFHLRNRWAKRRLNVEWEGRTLNHNFTPKYLGVTL
FT                 DRSLTYKTHCNNIKDKVKTRNNLLRKLVNTQWGAQPKVLRTSALALSFSAA
FT                 EYAAEVWERSAHAKKVDIALNDTARIVTGCLKSTPVNKLYPLAGIAPPQVR
FT                 RQVISRKEMSKASTEPRHLLYGQVRVRQRLKSRKSFSQTVTCLEATPEEAK
FT                 LSLWKNTFPPDFVEPKENLPPGGDQDWKTWRALNRLRSGVARSRDNRRRWG
FT                 FLEGDVLCDCGVVQTTPHLYVCPLAPASCETGDLMTANSAAIDVARFWARH
FT                 V"
XX
SQ   Sequence 2912 BP; 847 A; 641 C; 673 G; 751 T; 0 other;
     atgaccaaag aagatattct ttgcgaattt tgtgttaact ttgaatgtga cgttatttgt        60
     ctccaagaaa cccacagagg ccctacgcaa ggacgaccaa agatcaatgg tatgaaattg       120
     gtgattgaga gaccccacga taagtacggc agcgcgattt tcgtaaagtc ggacgttgat       180
     gtcaagtcgg tggcccttac tgactgcgac gatgttgaga tcctgacagt gaactttgaa       240
     aagttctcag ttacatcagt ctacaagccc cctggcacat gttttcaatt tgaagaaccg       300
     aataactttg ggaattctaa tgcccatttt gttctcgggg attttaattg tcataacatc       360
     ctatggggct acggcaaaaa caatgatgat ggggatgcat tggaggagtg gagtgaaagc       420
     aaggggttga cactaataca tgatgccaaa ttaccagcat cattcaacag tgcaagatgg       480
     caaaggggct acaaccctga cctcatcttt gttgatgaaa aaatagctcc ctcttgctgc       540
     aaaaatgttt tgccacccat tccccatacg caacacagac ctatcatgtg ccaattgttt       600
     gctgcgatta agcctagaga ggtgcctttt cgccgaaggt ttaacttctc taaggccaat       660
     tggaacaggt ttgcatcgga cgtggatctc agcttagggg acatcgaacc aacatctgag       720
     aactatgacc ggtttgtgga agcagtaaag aaggtgtcac ggaggcacat tccaagaggg       780
     tgtcgtactc aatacatccc aggtttgtcc tctgagatat ccagcattat gtcggaatac       840
     agcaagtctt ttgaggctga tcctttcagt gacgccacat tagagcttgc taatgtattg       900
     accgacgccg ttgctgagag tagacgggaa cggtgggtgt caatcgttga gagtatggat       960
     ttgtcaaaaa atagccaccg agcttggcga ctgatccgac acctcaacaa cgaccctacc      1020
     tccgtcaaaa ctctccctca agtgactgct aaccagatcg ctcatacgtt gcttatgaat      1080
     ggaaaagtag gctctcgttc tgcgaagcca aagtttatta gagatcccac tacagaggtt      1140
     caacaccttt ctgcaccatt tcgtgtagat gagcttgttt tggctgtcaa gtcgatgaag      1200
     aataagaaag cggcaggcta tgatggcctg tattcagaac aagtgaagag ttttgggccc      1260
     aggactattg actggctcct taaacttttc aactactgtt tatcacatcg caagataccg      1320
     aaagcatggc gaaaagctca cgtagtggcg atccccaaac ctggaaaaga cattaatgac      1380
     ccaaaaagct accgacctgt ctcacttctc tgtcatctct ttaaagtctt tgagagaatg      1440
     ctgttgaata ggattttaac tgtcgtagag gaaaagttga tcagcgagca agctggatat      1500
     cgtccaggaa aatccagctc aaaccaagtc ttaaacctga ctcaattcat tgaagatggt      1560
     tttgaggaag gtaagattac tggtgttgct tttgttgacc tctcggcagc ctttgataca      1620
     gtaaatcaca gagttcttct aaccaaattc tacaagctta catctgacta cgggctcaca      1680
     caaatgatcg gtactctttt acaaaaccgt cgtttcttcg ttgagtttcg tggtcaaaag      1740
     agccgatggc gactgcagaa aaatggctta ccacaaggta gtgttttagc tcccatgcta      1800
     tttaacatct acacaaatga tcagccattg ccgtctccat caaaagcctt cctttacgcg      1860
     gatgatctgg ccttggctgt aaaagcgtct acatttgaaa atgtggaagc ccaccttcaa      1920
     accagcctta ttgaactttc aaagttctat agggaaaatc agttaaggcc caacccctcg      1980
     aaaacagaag tgtgttgttt tcatttgcgc aataggtggg caaaaagacg actgaatgtg      2040
     gagtgggaag gaagaacttt gaatcataat ttcacaccca aatatctcgg agtcaccctt      2100
     gatagatctc taacgtacaa aacccactgc aataacataa aggacaaagt aaaaacgcgt      2160
     aacaatttac tacgtaaact tgtaaatact cagtggggcg ctcagccgaa agtgctacgc      2220
     acttctgctc tagctttgtc attctccgca gcggagtacg cggctgaggt atgggagaga      2280
     tcggcacatg caaagaaagt ggacatcgct cttaacgata ccgcgcgcat cgtcacaggg      2340
     tgtctaaaaa gcaccccggt aaacaaatta tatccgctag cgggaattgc tccaccacag      2400
     gtcaggagac aagtgatttc caggaaggaa atgtcgaagg cttctacaga gccaagacat      2460
     ttactctatg gtcaggtaag agtacgacag cggctgaaat ctcgcaagag tttcagtcaa      2520
     actgttacgt gtctcgaagc aacaccggag gaagcaaaac ttagtctgtg gaagaatacc      2580
     ttccctccag attttgttga gcccaaggaa aatctccctc ctggtggtga ccaagactgg      2640
     aaaacttgga gagcgctaaa tcgtttgaga agcggagttg cgcggtcaag ggataacaga      2700
     cggcgatggg gtttcttgga aggagacgtt ctgtgtgact gtggggtggt tcaaactact      2760
     ccccacttat atgtttgtcc actagctcct gcatcatgtg agacaggaga tttgatgacg      2820
     gctaattcag ccgctattga cgtggcccgt ttctgggcaa gacatgtata agtattttta      2880
     tgcctcgact cgattaataa taataataac aa                                    2912
//
ID   Vingi-1_Tcas repbase;    DNA;    INV; 3181 BP.
XX
AC   .
XX
DT   30-JAN-2010 (Rel. 15.02, Created)
DT   17-AUG-2010 (Rel. 15.09, Last updated, Version 3)
XX
DE   A family of Vingi non-LTR retrotransposons from Tribolium
DE   castaneum.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element; Ingi-1_Tcas;
KW   Vingi-1_Tcas.
XX
NM   Ingi-1_Tcas.
XX
OS   Tribolium castaneum
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis;
OC   Tribolium.
XX
RN   [1]
RP   1-3181
RA   Kojima K. and Jurka J.;
RT   "Ingi non-LTR retrotransposons from insects.";
RL   Repbase Reports 10(2), 150-150 (2010).
XX
RN   [2]
RP   1-3181
RA   Kojima K.K., Kapitonov V.V. and Jurka J.;
RT   "Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR
RT   Retrotransposons in Hedgehogs.";
RL   Molecular Biology and Evolution 28(1), 17-20 (2011).
XX
DR   [1] (Consensus)
XX
CC   Originally classified as Ingi [1] and re-classified as Vingi [2].
CC   ~95% identical to consensus. The 3' termini are composed by (TA)n
CC   microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           50..3109
FT                 /product="Vingi-1_Tcas_1p"
FT                 /note="includes endonuclease and reverse
FT                 transcriptase domains, and a CCHC zinc-finger
FT                 motif."
FT                 /translation="MGGFSPPRNYRHLDDRSRSTRSSRSSSGFLGLRSSSE
FT                 ILELPQNLTVCQLNIEGISKDKCDFLSKMALRERIDVIVLQETHTSSEMDL
FT                 FSRGQIPGYTLVDFINSASYGCATYVKSNFEDYQSIAKTQENNIFLLTVKI
FT                 AGIFIINVYKPPNDQWPENLVLNYHPAIYIGDFNGHHNLWGYAENYRNGLA
FT                 LVSWMELNKLHLVFDGKTRKSFYSARLKKEYDPDLCFVTINNEVPLQASRD
FT                 VLSGFPHSQHRPVIIKIGNEIKQFPSLQKPRWNFQKAKWNEFAKQVDSDLR
FT                 WIPPTSINYHRFVGAIKNAAKKFIPRGFRKNYVPCWSDETKSFYNAYVSNP
FT                 NPENADAVLNSFNKARKEKWNNLMEDLNFTHSSRSSWKLLQKLGSSNIAQP
FT                 KTDSAISPNAVASRLVNVSNSVKLEKRAKKEMKRRVQKQRKKMKVSEELSR
FT                 CFNVDELKAAISSTKSKKSAGFDGIYPEFIKNLGSFALKWLTFLFNDIFIS
FT                 ARLPSEFKKTKVIAILKKGKPPQEASSYRPISLLSVCYKILEKMIYQRISP
FT                 LIEDILPSEQAGFRPQRSCCDQVLALTTHIESGFEKRLKTGVVLLDLTAAY
FT                 DTVWKDGLIHKLYKVVPCKRIVSLIESMLTNRKFRVFVGEKSSKVKTLNNG
FT                 LPQGAVLSPLLFNVYTSDLPETFSRKFVYADDIALTFQHKEFHRLEEQLSQ
FT                 DASVLCDYFKQWRLCVNPSKTEVSCFHLSNSQKERKLNVSLNGIPLKHNFH
FT                 PVYLGVSLDCSLTYKFHLEKLRQKLKTRNNILLKLAGSTWGANAKTLRVTA
FT                 LALVFSTAEYCSAVWMNSSHTSKIDAQLNTAMRVITGTLKSTPTEWLPVLS
FT                 NIAPPALRRKLAVKKLWNKYRRHPQEYPIWSDLIAPENRLKSRKPFWVETF
FT                 NIENFFIINEWRNIWSNIQLFNKDLIEDPSKRVPGMDQPRWVWVKLNRLRT
FT                 GHARCKSMLFKWKATENPYCQCGQVEETIQHLVEECQITSFQGGFNEIHQL
FT                 SPQAKTWLSTIKVL"
XX
SQ   Sequence 3181 BP; 1022 A; 607 C; 596 G; 955 T; 1 other;
     ctttgattga cggatgtcgg taaccaagtc tctctgattt tggtccgtta tgggtggttt        60
     ttcgccaccc agaaattacc gacacttgga cgaccgatcc agatctacaa gatcctctcg       120
     gtcatcgtct ggttttcttg gattgcgaag ttcttccgaa attttggaac ttcctcaaaa       180
     tttgacagtc tgtcaattga atatagaagg aatttcaaag gataagtgtg atttcttgtc       240
     gaaaatggct ctaagggaac gaatagacgt tattgttctt caagaaaccc atacttcgtc       300
     agaaatggac cttttttctc gtggacaaat tcctggttac accttggtgg atttcatcaa       360
     cagtgcttct tacggttgtg caacctatgt taaatcgaat ttcgaagact atcagtccat       420
     cgccaagaca caggaaaaca acatctttct tctcactgtg aaaattgctg ggatttttat       480
     tattaacgtt tataaacccc ctaatgacca atggcctgaa aatctggtgc tgaactatca       540
     tccagctatt tacattggcg atttcaatgg tcatcacaat ttgtggggtt atgcggagaa       600
     ctacaggaat ggccttgctc ttgtttcatg gatggaacta aataaacttc atttggtttt       660
     tgacggcaaa actaggaaaa gtttctattc ggccagattg aagaaggagt acgatcccga       720
     tttatgcttt gttacaataa acaatgaagt accattacaa gcatcacgag atgtactatc       780
     tggttttcct catagccaac atcgtcctgt tattattaag attggcaatg agataaaaca       840
     atttccttct cttcaaaaac ctagatggaa ttttcaaaaa gcaaaatgga atgagtttgc       900
     taaacaagtg gatagtgatc ttcgttggat tccaccaact tcaatcaatt accacagatt       960
     tgttggagcc atcaagaatg ctgctaaaaa attcattcct cgtggattca gaaagaatta      1020
     tgttccttgt tggagtgatg aaacaaagag cttttacaat gcatacgttt ctaatcctaa      1080
     cccagaaaat gccgatgctg tattaaattc atttaataag gcgaggaaag aaaaatggaa      1140
     caacttaatg gaagatttaa atttcacaca cagtagtcgc agtagttgga agctgttgca      1200
     aaaacttgga tcttcgaaca ttgcacaacc taaaacagat tctgctatca gtccgaatgc      1260
     tgtagctagc cgtctagtaa acgtgtcaaa ctccgttaag ctagaaaaaa gggcaaagaa      1320
     ggagatgaaa cgaagagttc aaaaacagag aaaaaaaatg aaagtttcag aagaactgtc      1380
     gagatgtttc aacgtagatg agttgaaagc agccatatca tcgactaaaa gcaagaagtc      1440
     ggctggtttt gatggaatct acccagaatt catcaaaaat cttggaagtt ttgctctgaa      1500
     atggcttaca tttcttttta atgacatttt tatttcagcc cgtttgccct cagagtttaa      1560
     aaagactaag gtgatcgcca ttttaaaaaa gggaaaacct ccacaagaag catccagtta      1620
     tcggcccatt tctttgctga gtgtatgtta caaaattttg gagaagatga tttatcagcg      1680
     catttctcct cttattgaag atattcttcc ctctgaacaa gctggatttc gaccacaaag      1740
     aagttgctgt gaccaagtct tagctttaac gacccacatt gaatctggtt tcgagaaacg      1800
     cttgaaaact ggtgttgttc ttttggatct cactgccgca tatgatacag tttggaagga      1860
     tggtttaata cacaaacttt ataaagttgt gccttgcaag cggattgtca gtcttatcga      1920
     gagcatgtta acaaacagaa agtttagagt ttttgttggt gaaaaatcaa gcaaagtcaa      1980
     aactctcaac aatggtcttc ctcagggwgc cgtattatct ccattactct tcaatgtata      2040
     tacgagtgac ctccctgaaa ccttttcaag aaagtttgtt tatgctgatg atatcgcact      2100
     gacttttcaa cataaagaat ttcatcgatt agaggaacaa ctttcccaag atgcttctgt      2160
     tttgtgtgat tacttcaaac agtggcgtct atgtgtaaat ccatcaaaaa cagaagtttc      2220
     ctgcttccat ttatcaaact ctcaaaaaga aaggaaattg aacgtctcat taaatggaat      2280
     accacttaaa cataactttc atccagtcta ccttggtgtc tctcttgact gttcgctcac      2340
     ctacaagttt caccttgaaa aattaagaca aaaactgaaa acaagaaaca acattttatt      2400
     aaagttggcc ggttcgactt ggggtgctaa tgctaaaact cttcgtgtta cggctcttgc      2460
     attagtattt tcaacggctg aatattgtag tgctgtttgg atgaacagtt cacatacaag      2520
     caaaattgac gcacaattaa acactgctat gcgagtcata actggcactt taaaatcaac      2580
     ccccaccgaa tggcttccag tattgtctaa cattgctcca cctgcactca gaagaaaact      2640
     tgcagtcaag aaactgtgga acaaatatag aagacatccc caagagtatc caatatggtc      2700
     tgacctgatt gcccccgaaa atcgattaaa atctagaaaa cctttttggg tggaaacgtt      2760
     taacatcgaa aactttttca tcattaatga gtggcgcaat atatggtcta atatccaact      2820
     gttcaataaa gatttaatag aagatccatc aaaaagggta cctggaatgg atcaaccacg      2880
     gtgggtctgg gtgaaattaa acagactaag aactggccat gccagatgta agtcaatgtt      2940
     gtttaaatgg aaggctacag aaaatccgta ttgccaatgt ggccaagtgg aagaaacaat      3000
     tcaacatctt gttgaagaat gccaaattac aagttttcaa ggaggcttca atgaaatcca      3060
     tcaactgtcg ccacaagcta aaacttggtt atctactata aaagttttgt gatttcttct      3120
     acatacaatg tactattgtc cttttttttc tgtcatacga atatatatta tatatatata      3180
     t                                                                      3181
//
ID   Vingi-20_LMi repbase;    DNA;    INV; 3205 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 19.12, Created)
DT   07-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-20_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3205
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3514-3514 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(175..348,291..833,1021..1518,1344..2549,
FT                 2557..2949)
FT                 /product="Vingi-20_LMi_1p"
FT                 /translation="MRLSIQIIEKPAVDVIALQETHTADDQQIKSRGKIPG
FT                 YKLIASNNHSKCGLAIYVKHTINSLKQPFKMWSSNLRQAYIKNYQVVSVSS
FT                 ENNIFTISAKIDSATIVNVYKPPRVNXPTPPLPSQQHPTLFLGDFNSHHNL
FT                 WGYCENDSNGEALCEWMETENLKVIFDAKDPPTFHSGCWNRGYTPDLCFTT
FT                 QLHSSHTQIRRSALRISLTVSTDLSFSRDWNMCTPCAVTPETKVEFQESRK
FT                 SNVDKATDLLQSLDENRKKIWHETVESFDHTHSSRKAWSIIRKLDATNQTP
FT                 VRPKTAIKLNDFAKHLISNSKSPKDKQTRREIKTQLNTKKRAAPNSSKFSN
FT                 PFTEEEVRDAIRNMKVGKALDSMGSILNFSHTVDQQLSNGFLTSSQTFSPL
FT                 EIFHHYSRKPSRGSKRCHQKHESWKGAGFDGIYPEFLTHCGPATIKWLSNF
FT                 FSDILSTGNLPPLFKKTKLIAILKPNKDPTKVESYRPIALLSVTYKLLERL
FT                 IYNRIHXTINKXIPIEQAGFRPGRSCNDQVFALTTHIESGYEKKFVSIAAF
FT                 LDLSAAYDTVWREGLLLKFVSIIQCRKLTNLLSNMLSNRLFQIYSDNDRSK
FT                 VFKLNDGLPQGSVLAPLLFNLYIYDLPATSSRKFIYADDICLVTQSPSFTT
FT                 AESTLTADMEILDTYFRKWCLRLNLQKTVTSAFHLRNRHSNYKPEVKLRGQ
FT                 TLQYCSTPKYLGVTLDRSLTFRQHLSNVAAKVKTRNNIIQKLAGTSWGCSA
FT                 QTLRSTALALSYSVAEYCCPTWMNSVHSRKIDVQLNQTMRLITGCIHSTQT
FT                 AGYQFHPTSSSTRSDALLKIWRNIQKNPQLPIHSDTSTAEHQRLKSRKPSW
FT                 KTAHHLDVTNFDINEAWKSHWEESSVSTVIWLKTLQCEFQVSHSPDASGES
FT                 STASEQDKGTADIYSTNGAGQHLPSVTVELPYKQ"
XX
SQ   Sequence 3205 BP; 1084 A; 760 C; 597 G; 756 T; 8 other;
     ggtggtgcta aatgagtaat agcaacaaga tgagacggaa ctgcccgaaa aggcctcccg        60
     gtcaaagagt gcagagcaaa caacaagaag tccttttcag gatgcacaag ttcgtagaat       120
     tggaccatct attcgcatac tccaactkaa catagaagga ataagcaggt cgaaatgcga       180
     ctatctatcc aaattatcga aaaacctgca gtcgatgtca tcgcactcca agaaacacat       240
     acggcagatg atcaacagat aaagagcaga gggaaaatac caggatataa attaatagcc       300
     tcaaacaacc attcaaaatg tggtctagca atttacgtca agcatacata aaaaattatc       360
     aggtagtttc agtgagcagt gaaaacaata ttttcacaat ttcagcaaaa attgatagcg       420
     caacaatagt caacgtctac aagcctccca gagtaaactg kcctactcct cctctaccat       480
     ctcagcagca tccaactctg ttcctgggtg acttcaacag ccatcataat ttatggggat       540
     attgtgaaaa tgacagtaat ggtgaagctc tttgtgaatg gatggagact gaaaacttga       600
     aagtaatctt tgacgccaag gatccaccta cctttcattc aggatgttgg aacagaggat       660
     atactcctga cctgtgcttc acaactcagc tccacagcag ccatacccag atacgccgct       720
     ctgcacttag gatttcactc acagtcagca cagacctatc attttctaga gactggaata       780
     tgtgtacccc ttgtgcagtc acacccgaaa ccaaggtgga atttcaagaa agctaactgg       840
     actcaattca gaaaacaaac agattacact atcagatgga tcaagccaat acacagtaac       900
     tacaatcggt ttataggcat aattaaagga kcagcmagac gatttatccm tagaggctat       960
     cgtaaagaat attactcctg gctggtgtga ggacagcaaa aaattgctcg aagaatatga      1020
     agaaaatcca atgttgacaa agctacggac cttttgcagt cacttgatga aaataggaag      1080
     aagatctggc atgaaaccgt agaatcattc gaccacacac actcaagtcg taaagcttgg      1140
     tctattatca gaaaactgga tgcaacaaac caaacaccag taagacctaa aactgccatc      1200
     aagctgaatg attttgccaa acatctaatc tcaaactcca agagcccaaa ggataagcag      1260
     acaagaaggg aaatcaaaac tcagctcaac accaagaaaa gagcagcccc aaattcttct      1320
     aaattttcca atccattcac tgaagaggaa gtaagagatg ccatcagaaa catgaaagtt      1380
     ggaaaggcgc tggattcgat gggatctatc ctgaatttct cacacactgt ggaccagcaa      1440
     ctatcaaatg gctttctaac ttcttctcag acattctctc cactggaaat cttccaccat      1500
     tattcaagaa aaccaagtta atagcaatcc tcaaaccgaa caaagaccca acaaaagtag      1560
     aaagttaccg cccaatagct ctgttaagtg ttacttacaa attacttgaa cgactcatct      1620
     acaacaggat ccacgamaca attaataaag awatacccat agagcaagct ggattcaggc      1680
     ctggtagaag ctgtaatgac caagtgtttg ccttaacaac mcacattgaa agtggatatg      1740
     agaagaaatt tgtaagcata gctgctttct tggatctatc cgccgcctat gacaccgtat      1800
     ggcgagaagg ccttctcttg aaatttgtga gcatcattca gtgtcggaaa ctcacaaacc      1860
     tacttagcaa catgctaagc aacagacttt tccagatcta ctctgataac gacagaagca      1920
     aagtcttcaa gttaaatgac ggattacccc aaggatctgt attggcccct ctccttttca      1980
     atttatatat ctatgacctg ccagccacat cctcaaggaa attcatatat gctgatgaca      2040
     tctgtttggt aacccagagc cctagtttca ctactgctga aagtacatta actgccgaca      2100
     tggaaattct ggacacatac ttcaggaaat ggtgcctccg cctaaacctt cagaaaactg      2160
     tcacttcagc atttcaccta cgaaatcggc actctaacta taaaccagaa gtaaaactca      2220
     gaggacaaac cttgcagtac tgcagcacac cgaagtacct tggagtaaca ctcgacagat      2280
     ccctaacttt ccgtcaacac ctctccaacg tggctgctaa agtgaagacc cgtaataata      2340
     tcatccagaa gcttgctggt acctcctggg gttgcagtgc tcaaacccta cgatcaactg      2400
     ctttggcact gtcatactct gtcgctgaat actgttgtcc aacttggatg aacagtgttc      2460
     actctaggaa aatagatgtg caactcaacc agacaatgcg acttatcacg ggttgcatac      2520
     atagcactca aactgctggc taccagtttt aagtaacatc caacctccag ctctacgaga      2580
     tcagatgctc tcctgaagat ctggaggaac attcagaaga acccccagct acccatacac      2640
     agcgatacat caacagcaga acaccagcgt ttgaagtcaa gaaaaccatc ttggaaaact      2700
     gcacatcatc ttgatgtcac caactttgac atcaacgaag catggaaaag ccactgggaa      2760
     gaatcgtcag tgtcaacggt catctggttg aaaacccttc aatgcgagtt ccaggtttca      2820
     cactccccag acgccagtgg agaatcatca accgcatccg aacaggacaa gggaactgcg      2880
     gatatctaca gcacaaatgg ggctgggcaa catctcccga gtgtgactgt ggagctgccc      2940
     tacaaacaat aaaccagtgg tgaatgcccg aaacgagcct ttgggggatc aataaatgac      3000
     atccaccatg catcacctga agggctcaac tggatcacct gttggactta gaatctaaga      3060
     acttgtgtaa tgtgtacata atttaatata acactgtaca tatgatcctg tacatatatt      3120
     gtccttgtca tacatatctt acaatgtata caattagaac tatgtacttg aaccaagctc      3180
     tgtatcatca ttcgataaat aataa                                            3205
//
ID   Vingi-21_LMi repbase;    DNA;    INV; 3220 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-21_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3220
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 311-311 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(249..1142,884..3064)
FT                 /product="Vingi-21_LMi_1p"
FT                 /translation="GLHQXNVDILALQETHIEEPLNNARGNIPGYRLVAAI
FT                 GHRAYGVSTYVRQGLDDVTVKHNSSNDDTFILAVKVSEITIVNVYKPPNTQ
FT                 WTDTVLPVFEHPALYVGDFNSHHSQWGYPADDENGRRLTSWAENNNFSLIF
FT                 DAKDNSTFYSARWRRGYSPDLCFCSCERSSKPMTARRRVLGAFPHSQHRPV
FT                 IISVGTQIPIIRSFPRPRWNFSKADWETFTSKVEQSIRFIPPIITTTVSRI
FT                 FSWLLLNSVSPGASGKNTCQDGVENATIFTRSFKTPKALTQPTICCSLLTL
FT                 PGKRSGQSRLGDLYFKGRAEHQVYPSHNNYDRFANLLLAIAKQCIPRGFRK
FT                 EYVPGWSRECDDLYKEFQDTESPDTADHLLQSLDTARKEKWIKTVENLNFT
FT                 HSSQRAWSLLKKLSSGKPADNCTVTHPNPCDIAKRIVSSSKSARLPSDKRV
FT                 AYKLNKILRSQFTPLEVSRPFTEEELEAAITTLQTGKAAGLDKIFPEFLKH
FT                 IGPKTKFWLLTVYNAILATGNLPKAFKRSKIVAILKPGKSPEQAESYRPIA
FT                 LLSVCYKLLERLIYNRISQILDASIPVEQAGFRPGRNCCDQVLSLTSFIEK
FT                 GYEMKKKTSAAFIDLSGAYDTVWRKGLLLKFYNIIPCPLLLRFLNSTLSNR
FT                 LIKVYLGHKESAFRQLNDGLPQGSVLAPLLFNVYIADIPATQSKKFIYADD
FT                 IALATQHTDLPTTEATLTNDLATLQEYFRTWKLKPNPNKTEVSCFHLNNKL
FT                 ANQKLNIYLDGVKLTHNNHPKYLGVILDRSLTFKSHLQKTAAKVKTRTNIL
FT                 QQIAGSSWGANAQVLRTTALSLVYSSAEYCAPVWLNSAHVREVDVQLNRAM
FT                 RIISGTLLATPLPWLPVLCHIPPPEIRRQEALIREYKKILSTPQLPITQYL
FT                 PQNLSRLKSRKPPLRLASQLIAEDFSPNTTWAASWDXFEGRNKHLIPSPST
FT                 KVGGMNLPRREWTLLNRFRTGVGRCNYWKCKWGMTLDQSCDCGADTQTMDH
FT                 IAIDCPCVLSLRGWLVFTI"
XX
SQ   Sequence 3220 BP; 950 A; 828 C; 661 G; 779 T; 2 other;
     gggggatggt gttattcgcg tccgcagcat tcctcaagct gcacgtatcc cccggatggt        60
     gccaaacgaa taacaattct ggtagctgga ctgtcacacc agtgatctcc cagctatgtc       120
     agctacccac caaaatccaa atggaccttc tcaggaccaa cataatttta agaatatagt       180
     ccagttctca gtgtttgtca ttttaacgcc gagggtttga gcaaatcaaa atgtgagtgt       240
     ctaagtaagg tctgcatcaa macaatgtcg atatccttgc acttcaagaa acccacattg       300
     aagaacctct aaacaatgca agaggcaata tccctgggta tagactagtg gcggctatag       360
     gccacagggc ctatggggtg tcaacttacg tcagacaagg cctggatgac gtaacagtaa       420
     aacacaacag ctctaatgac gatactttca ttctggcagt taaggtgtct gaaatcacca       480
     tagtaaatgt ctacaaacct cctaatactc agtggacaga cacagttctt ccagtttttg       540
     aacaccctgc cctctatgta ggggacttca atagccacca cagccaatgg ggttaccctg       600
     cggatgatga gaacggcagg agactaacca gctgggctga aaataacaac ttttccctca       660
     tctttgatgc taaggacaac agcacatttt actcagctcg atggcgccgt ggttattctc       720
     cagacttatg cttctgctca tgtgaacggt cttcaaagcc catgacagct aggagaaggg       780
     tccttggcgc tttccctcac tcccagcata ggcccgttat aatttctgtg ggaacccaaa       840
     tcccaataat tcgatcattt ccaagaccta gatggaattt tagcaaagcc gactgggaga       900
     cctttacttc aaaggtagag cagagcatca ggtttatccc tcccataata actacgaccg       960
     tttcgcgaat cttctcctgg ctattgctaa acagtgtatc cccaggggct tcaggaaaga      1020
     atacgtgcca ggatggagtc gagaatgcga cgatctttac aaggagtttc aagacaccga      1080
     aagccctgac acagccgacc atctgctgca gtctcttgac actgccagga aagagaagtg      1140
     gataaaaact gtggaaaact taaacttcac gcacagcagc cagagagcct ggtctttatt      1200
     aaagaaactt tcctctggca agccagctga taattgcaca gtgacacacc caaacccctg      1260
     tgacatagct aagcggattg ttagctcatc aaagtcagcc cgtctaccct ctgacaaacg      1320
     tgttgcatac aaactgaaca aaatattgag gagccaattc acacccttgg aagtttcaag      1380
     acccttcact gaagaggagc tagaggctgc aatcaccacc ctgcaaactg ggaaagccgc      1440
     aggactagat aaaatctttc ccgagttcct taaacacatt ggccctaaaa caaaattctg      1500
     gctcttaaca gtctataacg ccatactagc cactggaaat ctgccaaagg catttaaaag      1560
     atcaaaaata gtagccattt taaagccagg taaaagccca gagcaagctg agagctatcg      1620
     ccccatagcc ctactaagtg tctgctataa gctgctggag aggttaatct ataaccggat      1680
     atcacagatc cttgatgcca gcatccccgt cgaacaagct ggtttcaggc caggtcgaaa      1740
     ttgctgtgac caggtccttt ctctgacatc gttcattgag aaaggttatg aaatgaaaaa      1800
     gaaaacatca gcagccttta ttgacctctc cggagcttat gacacggtct ggagaaaagg      1860
     actgttactg aaattttaca atatcatccc gtgccccctt ctcctgcgct ttttgaattc      1920
     caccctcagt aacaggctaa ttaaagttta cctgggtcat aaggaaagtg cttttaggca      1980
     gcttaatgat ggcctccccc aggggtccgt tcttgctcct ctcttgttca atgtatacat      2040
     tgctgacatc cctgcaacac agtctaagaa gttcatttac gccgatgaca tcgctttagc      2100
     aacccagcat actgacctac ccaccacaga agcaacactc acgaatgatc ttgccaccct      2160
     ccaagaatat ttcagaacct ggaagttaaa gccaaatcca aacaaaacag aggtatcctg      2220
     cttccatttg aataataaac tagccaacca gaaacttaac atctatctcg acggtgtgaa      2280
     gctcacacat aataaccacc caaaatatct gggagtaata ttggatcgct ctctcacttt      2340
     taaaagccac cttcaaaaaa cagctgccaa agttaagacc agaactaaca tcttgcaaca      2400
     aattgctgga tcatcctggg gagcaaacgc acaagtcctg cgtactactg ctctgtccct      2460
     ggtttattca tcggctgagt attgtgctcc tgtgtggctg aacagtgccc acgtgcgaga      2520
     ggttgacgtc cagcttaaca gagccatgag gataattagt ggtaccctct tggctacacc      2580
     tcttccgtgg ctcccagttc tgtgccacat acctccccca gagattcgtc gccaagaagc      2640
     actcatcaga gagtataaga aaatattatc taccccacaa cttcccatca cgcaatatct      2700
     cccacaaaac ctcagccgac ttaagtccag aaagccacct ctacgcttag cttcccagtt      2760
     gatagcagag gatttctcgc ccaacaccac ctgggcagcc tcatgggaca tstttgaagg      2820
     gcgaaacaaa cacctcattc ccagcccttc cactaaagtc ggtggcatga acctccctcg      2880
     cagggagtgg actctgctga atcgttttcg cacaggagtg ggtagatgca attactggaa      2940
     gtgcaaatgg ggaatgacac tagatcagtc atgtgattgc ggagcagaca cccaaactat      3000
     ggaccacata gcaatagact gcccctgcgt tctttcgctg aggggttggc tggtcttcac      3060
     aatataaatg aagcaggact taaatggctt aaatcactgg acctggctct gtgacgggag      3120
     atcctattca cacataattt ttaatcccct gaacgcaagt actatgtact gtagtaacaa      3180
     tagtttaata tggtggctga caagaaccat acgataataa                            3220
//
ID   Vingi-22_LMi repbase;    DNA;    INV; 2385 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-22_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2385
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 312-312 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(40..735,612..1031,962..2323)
FT                 /product="Vingi-22_LMi_1p"
FT                 /translation="NWNHIPLITTTQRPRWNFRKAKWDIHPEKLDKCLGWI
FT                 HPTANNDRFMGAVKSAAKAAVPRGFRKQYVRGWDKECENKYQRFLESGDPE
FT                 IADDLLHSLDNARREKWIETVESLDFKTSSRKAWSLLRKLGGANKLHHNST
FT                 DISANRISAHIQATSRAPRDKKHTRTIRRELSFLKKNSTPLDQYSSKFTTT
FT                 EVREALKSVKAGKAPGLDGVHPEFLLTVGNMPKNGLLNFIQMSQRSAEECQ
FT                 GRKGTWIGWSTPRIPSYCGEYAKKWLAEFYSDVMATGNIPQKMKNSKIIAL
FT                 LKPGKPSNQPKSYRPIALLSVLYKLLERLLYNRLSPKILESIPDEQSGFRP
FT                 NRSCTDQVLSLTTHIEAGYQKSKKHQLHLSSTFPDNAYRGRLSKKQKTSIA
FT                 FIDLSAAYDTVWIQGLLYKLIKIIPCSSTIRLINNMLTGRAFQVITGERTS
FT                 STKVLNNGLPQGSVLAPLFFNLYISDIPNTQSRKFGYADDWAIAAQHESFE
FT                 ATEDILCSDLKLLCGYFRKWRLQPNPTKTEVSSFHLCNHSARRELNVIFEG
FT                 KRLSHNNYPKYLGVTLDRTLSYKEHLTNTANKMRTRNNIIHKLCGTTWGST
FT                 ANTLRTSAVGLVYSVAEYCAPVWINSPHTNRIDVVLNDTMRTISGTIKSTP
FT                 TVWLPTLSHIPPPEMRRKNALLREYNKITNNPQLPIHSDVADLERRRLKSR
FT                 RPALLSAKEMMNTNFEVEDLWKQHWQEHCPPKCQSFMTGEKPPGFNQPRKV
FT                 WTTLNRIRTGHGRSADAFYKWGKTPSPNCDCGAEKQTVRHIVEECPFRAYK
FT                 GTFNDFLAATEEAINYIKCLDVNL"
XX
SQ   Sequence 2385 BP; 810 A; 570 C; 498 G; 507 T; 0 other;
     ggacttccct catagccaac accgcccagt cttcattgaa attggaacca tatcccactg        60
     ataaccacca cacaacgccc aaggtggaat tttagaaagg ctaagtggga tatccatccg       120
     gaaaaactgg ataaatgctt gggatggatt cacccaacag ccaataatga cagattcatg       180
     ggtgcagtta aaagcgcagc gaaagctgct gtcccaaggg ggttccgtaa acaatatgta       240
     cgaggatggg acaaagagtg cgaaaataag tatcagagat tccttgagag tggagaccct       300
     gagattgcag atgacctact gcacagccta gacaacgcaa gacgagagaa gtggattgaa       360
     accgttgagt cgcttgattt caagacatct agtagaaagg cctggtctct cctacgaaaa       420
     ctaggtggag ccaacaaatt acatcataac tcaacagata tctctgcaaa taggatttca       480
     gctcacatac aggcaacatc cagagcacca agggacaaga aacatacaag aacaatacgc       540
     cgcgaactta gctttcttaa gaaaaacagc acacctttgg accagtattc ctcgaaattt       600
     accaccactg aagtcagaga agcgctgaag agtgtcaagg caggaaaggc acctggattg       660
     gatggagtac acccagaatt ccttcttact gtggggaata tgccaaaaaa tggcttgctg       720
     aattttattc agatgtaatg gcaacaggga acataccaca gaaaatgaag aactcaaaga       780
     tcatcgcact tcttaaacca ggaaaaccaa gcaatcagcc aaagagttat aggccgatcg       840
     cactgctcag tgtcttatac aagctgctcg agagactcct gtataacaga ctgagcccaa       900
     aaatactaga atcaattcca gacgaacaat caggatttcg tcctaacaga agctgcactg       960
     atcaagtact ttccctgaca acgcatatag aggcaggcta tcaaaaaagc aaaaaacatc      1020
     aattgcattt atagacctga gcgcagccta cgacactgtc tggatacaag gcctgttgta      1080
     caaactaata aaaataatcc catgcagcag taccatcaga ctcatcaaca atatgcttac      1140
     tgggagagct ttccaagtga ttactggaga aagaacgagc tccaccaaag ttctcaataa      1200
     cgggcttcca cagggctcag tccttgcccc attgttcttc aatctttata tctctgacat      1260
     tccaaacaca caatctagga agtttggtta tgcagacgac tgggctatag ctgcgcaaca      1320
     tgaatcattc gaggccactg aagacatttt gtgctccgat ttgaagctgc tttgtggcta      1380
     cttccgcaaa tggagactgc agccgaaccc gactaagacc gaagtatcaa gcttccacct      1440
     ttgcaaccac tcagcaagaa gagagcttaa tgtcatcttt gaagggaaac gtctcagcca      1500
     taacaactac cccaaatatc taggagttac gctggacagg acgctatctt acaaggaaca      1560
     cctgacaaat actgcaaata aaatgaggac aagaaataac atcattcata aactgtgcgg      1620
     cactacctgg ggctccacag caaacacact ccgcacatca gcagttggac ttgtctactc      1680
     ggtggcagaa tactgcgctc ccgtatggat taacagcccg catacaaaca ggatcgatgt      1740
     ggtgctaaat gacaccatgc gcactatcag cggcacgata aaatctacgc ccactgtatg      1800
     gctgccaacc ctgagccata taccacctcc agaaatgcgg cgaaaaaatg ctcttctcag      1860
     agagtacaac aagattacta ataaccctca gctgcccata cacagtgacg tagctgacct      1920
     agagcgcaga agacttaaat cgagaagacc agcactactc tcagctaaag agatgatgaa      1980
     taccaacttt gaagtcgaag atctgtggaa gcaacactgg caagaacact gcccaccaaa      2040
     atgccaaagt ttcatgacag gtgagaaacc acctggcttc aatcagccac gcaaagtgtg      2100
     gacaactcta aaccgcatac gtactggcca cgggagaagt gctgatgctt tctacaaatg      2160
     gggaaagacg ccatcaccaa attgcgactg cggcgctgaa aaacaaacag tccggcacat      2220
     agtggaagaa tgcccatttc gagcctacaa gggaaccttc aacgatttcc tcgctgcaac      2280
     agaggaggca attaattata ttaaatgttt agatgtaaat ttgtaattaa acaatgtata      2340
     aagtgtgtaa agatagcgat gtatgccata cgataaataa ataaa                      2385
//
ID   Vingi-23_LMi repbase;    DNA;    INV; 3122 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-23_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3122
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 313-313 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(440..853,823..1059,1063..1176,1228..1515,
FT                 1458..1820,1799..2023,2027..2989)
FT                 /product="Vingi-23_LMi_1p"
FT                 /translation="ITSKSSLYTNLPLCNTVDKKPTVIIGDLKCDSTHWGY
FT                 RESNQNGELLERWMDENQFCLLHDPKRPPSFNSGRWRRRYNPDLNFVSRDL
FT                 SNLSHKLVMEPIPKSQHSPIKLVIRPAAFPAEVPFRRRFNLKKKRAGRILL
FT                 KKKASWSDFINKLDESLKLIEPKPENYDKFVQSVKEITVKTVPTGCRTDYI
FT                 PGFTEENNAYEKYCNLYDMNPLSPATIVGNELMAALSDQKCRSWVETVEGL
FT                 DMTHSSRKESMEISPRTKMASQLLQNGKPDSKGYVNRSRRKANLVPKSNIL
FT                 ATDFSMEELAEAIKNLKTGKTAVLDEIRNEMTKNVSQIREKWLLDFFNCCW
FT                 KSAKIPKRKVAVGLFQLLLEISENPQEMKSWKRHRCTQAHITAVLFVEPLE
FT                 RLIVNRMGGYVDGCLIKEQAGFRLEKSCTSQALEDSFEKGLSTGVVFIDLT
FT                 TTYNIINLRTLISKVQHMTNCRNWWKSLPKLVEVLRALLFNRRFYVEFQNR
FT                 KSKWRNQKNGLPQGSVLSPMLFNIYTNDQPIGEKSKSFIYADDRAIAYQAK
FT                 HNEIEKGLSLELEALTDYYRGNQLRPNPSKTQVCLFHLNNREARKKLNIVW
FT                 DRVQLENCSNPTYLGITLDRTLTYKYHIEKTKAKLQTRNGILNKLTSAKWG
FT                 AKPNVLRTTALATCFSVAEYGCPVWGRSVHTKEIDTVLNDSCRKITGCLKP
FT                 TKVDHLYSLAGIAPPHIRRSILSSKERYKQLNDPRHPLFNHQPVPRRLKSR
FT                 QSFINATQPSAESIESLWKQKYPDALSHEEALPPGSHLDWQHWRTLNRLRT
FT                 GMGRCKQLMYKWGYTDTDRCKCEEIQTMEHLLRCPLVNTCGECSQEDLMRY
FT                 NETAALYTEFWMSEI"
XX
SQ   Sequence 3122 BP; 1046 A; 677 C; 662 G; 737 T; 0 other;
     gaagcgttca cgtcgcgacc tctgtcgagg ctgatgccaa atcgatatca gtctgcgagt        60
     tctgctacca aacgaactac actctatcgg tgaactatac atcgtctcat tatggctacc       120
     aaccgaagca accaagaaaa cagactgctc ttactagaac caattttgag aaacatctcg       180
     ctcaaaagtg aaggaatcta tgcaactaaa caagacctga tcgcagaaat cagcagtacc       240
     aacgaatgtg atgccctctg cttgtaagaa actgacagaa gctcctctca gattaagccc       300
     aatattatgg ggttgggatt agtaggcaag atagcccgcg agaagtatgg aaatgccgtt       360
     tttgtaagga aagacctgca aattactaaa agttgaactc ttcaacacaa taacattgaa       420
     ctgatagcac tggaattaga taacatcgaa atcatctctt tatacaaacc taccactgtg       480
     taacacagtt gataaaaagc ccacagtgat tattggagat ttgaaatgcg acagcacaca       540
     ttggggatat agagaatcta accagaatgg tgaactgctt gaacgatgga tggacgaaaa       600
     tcagttctgc ctgcttcacg atcccaagcg gcccccatcg tttaacagtg ggcggtggag       660
     aaggagatat aacccagatc tgaactttgt cagtagagac ctgagcaact tgagccacaa       720
     actcgttatg gagccaatcc cgaaatcaca acacagccca atcaaattgg taatcagacc       780
     agcagcgttc cctgcagaag tcccattcag aagaagattt aacttaaaaa aaaagcgagc       840
     tggtcggatt ttataaataa actagatgaa tcactaaaat tgatcgaacc caaaccagag       900
     aactatgaca aatttgttca gtcggttaag gaaattactg ttaaaactgt acctacgggc       960
     tgcaggactg actacatacc tggcttcaca gaagaaaata atgcgtacga aaagtactgt      1020
     aatttgtacg atatgaatcc cctatcccct gcaacaattt aagtaggtaa tgagctaatg      1080
     gcagccttaa gcgaccaaaa atgccgatcg tgggtcgaaa ccgtggaggg tctcgacatg      1140
     acacacagca gtaggaaaga aagcatggag attagttaaa aaaactgtca aatgatccaa      1200
     ccacaagaaa tccacaagta aatataaccc cgaactaaaa tggccagcca gctcttacaa      1260
     aatggaaagc cagactctaa gggatatgta aataggtcca ggcgcaaagc taacttggtg      1320
     cctaaaagta acatactggc tacagatttt tccatggaag agctagcaga agctataaag      1380
     aacctgaaaa cagggaaaac ggctgttctc gacgaaatca gaaatgaaat gactaaaaac      1440
     gtgtctcaaa ttcgtgaaaa gtggctgttg gactttttca attgctgctg gaaatcagcg      1500
     aaaatcccca agagatgaag tcatggaaac gtcatcgctg tactcaagcc catatcactg      1560
     ctgtgctctt tgttgaacct cttgaaaggc ttatagtgaa caggatgggt ggatatgtgg      1620
     atggctgctt gattaaggag caggcgggtt ttcgtctgga aaaatcctgt accagccagg      1680
     ctctcgaaga cagtttcgag aaaggactct caacaggagt ggtgttcatc gatcttacaa      1740
     cgacctacaa tattatcaac ctcagaactc tcatctcaaa agtccagcat atgactaatt      1800
     gccgaaactg gtggaagtcc taagagcact actctttaat agaagatttt atgttgaatt      1860
     ccaaaacaga aagagcaaat ggcgaaatca gaagaacggt ttgccacaag gtagtgtgct      1920
     gtcaccgatg ctctttaaca tatatacgaa cgaccaacct ataggtgaga agtcgaagtc      1980
     cttcatatac gcggatgaca gagcaatcgc atatcaagcg aagtagcaca acgaaataga      2040
     aaaaggtcta agcctggaac tcgaagccct cactgactat tataggggaa atcaacttcg      2100
     accaaaccct agcaaaactc aagtgtgtct gtttcatttg aataacaggg aggctagaaa      2160
     gaaattaaac atcgtttggg acagagtcca actggagaac tgctccaacc ctacctatct      2220
     gggcatcacc ctcgacagaa cattaaccta taaatatcat atcgagaaaa caaaggccaa      2280
     actccaaaca cgaaatggaa tactcaacaa gctaacatct gcaaagtggg gtgcaaaacc      2340
     aaacgttcta cgtaccacag cactcgccac ctgtttttct gtggctgagt atggatgtcc      2400
     agtctgggga agatctgttc atacaaagga aatagacacg gtccttaatg attcctgcag      2460
     gaagataacg ggctgcttga aacctaccaa agtggaccat ttgtattcac tggctggtat      2520
     tgctccgcct cacattagaa gatcgatcct cagctctaaa gaacggtata aacaactcaa      2580
     tgatccgagg cacccactat ttaatcacca gcctgtacct agacgactga aatctaggca      2640
     aagtttcata aacgcaactc agccatctgc ggagtccata gaatcactct ggaaacagaa      2700
     gtacccggac gcactcagtc atgaggaagc tcttccccct ggctctcacc tagattggca      2760
     acattggaga actttaaacc gactccgcac gggcatgggc cgatgcaaac aactaatgta      2820
     caaatggggt tatacggaca cagatagatg taaatgcgag gagatacaaa caatggagca      2880
     tctcctgagg tgtccgttgg tgaatacgtg cggagaatgc tcccaggaag atcttatgag      2940
     atataacgag accgctgctc tatataccga attctggatg agcgagatat gaattttatc      3000
     gtgtgtttgt tttagatgtg cttgtctttt aattttgatg acgtacgtcc caactgacgg      3060
     atatgttttt aatatataca ctcctgtatc tactaattta agtatgattg tacttattat      3120
     ta                                                                     3122
//
ID   Vingi-24_LMi repbase;    DNA;    INV; 3531 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-24_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3531
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 314-314 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(158..1618,1606..2475,2259..3047)
FT                 /product="Vingi-24_LMi_1p"
FT                 /translation="MIMKKKQQTPESVLTRELGSTTRICQLNVEGLSSSKS
FT                 QFLSKFLMENDVDVAVLQETHIENXEQQRSRGKIHGYDLLGAVYHRHYGLA
FT                 TYVRSSIENAALVSLSADCFQQIVTKIGELTVVNIYKPPQTEWPQNVIETH
FT                 PHPTIYAGDFNSHHTDWKYRTTDINGEKLSNWAEENHLHLVFDAKDKNTFK
FT                 SAIHNTETNPDLSFTTRNSQSHPIPTRRKIXESFPHSQHRPILLEIGINIP
FT                 LIRSLPRPRWNLQKANWDKFSNDIDQTLRWIPARWYNYDRFVNIIIAAAKR
FT                 YIPRGYRKEYIPGWNEETEELHQRFLQENDAEIADKLLRNLDVARRKKWEE
FT                 TTEALNFTKSSRKAWNLLRKLGDASAPEREVPGVSPNQIASRIVSLSRAPR
FT                 DKKRTTFVKRHLKSFRQSVEAPNKISRPFTVEEVNTAISKIKKGKAPGFDG
FT                 VLPEFLIHSGRRTREWLSQFFSHIMQTGLVPPXFKKAKIISLNNIFVKPGK
FT                 PKDKPESYRPISLLSTTYKLLERLILGRIEPILEEHLPVEQXGFRHNRGCE
FT                 DQVLSLTSHIEAGFQQXLKTTVAFVDLTVAYDTVWKDGLLYKLYRTVPCQK
FT                 LLRLFNNMLRDRTFQIIMGDKASRVRKINNGLPQGSVLAPALFNLYISDMP
FT                 ETKGRKFGYADDLAIAVQAKXMEDADTLLSQDLEVVGKFYADWRLIVSTSK
FT                 TETTSFHLTIGKQQNLXKYFSTIKCSPIISSQSILVSHWIAPSPSGNTWKQ
FT                 RQPKSTLAITSCTNCVAAGGEHMLPLFSLNNREATKSPKVLLNNKVLPHNQ
FT                 FPKYLGVTLDRTLSFRKHLEATAAKVNTRNNILHKLCGSRWGAHASTLRGS
FT                 ALALVYSAAEYCSSSWLNSSHVSKLDARLHDTMRTISGCIKSTPVQWLPVL
FT                 SHIAPPPLRRKGCLVRQLKRIQSDPDLPVHKDIPHLSLRRLKSRKPPLVSA
FT                 QQLQDADFNITEQWRTDWSTVNFTALWPDPTERPTGSNFPADNGKRLTGSE
FT                 HLTESVRILCTSGAYRKSSVRLWCFASDNRPYCV"
XX
SQ   Sequence 3531 BP; 1087 A; 845 C; 733 G; 857 T; 9 other;
     cgactgttcg cgtccgtagc aatcctcaag ctacacgtgt cccctgggtg gtgctaaaga        60
     acagtcactt cgaggcacga agtcagagcc agaagtcacg gcagccagac cacttgtgga       120
     ctgtcctggc tatcaaacac ttgggctgat taatgcaatg ataatgaaga agaagcaaca       180
     gactcctgag tctgtactga caagagagct gggcagcact acacggattt gtcaactgaa       240
     cgtagagggg cttagcagct ccaagagcca atttctttca aaatttctaa tggaaaacga       300
     tgttgatgta gccgttcttc aggaaacaca catcgaaaat cwagagcaac agaggtccag       360
     agggaagatc catggttatg atctgctggg agctgtatat caccggcatt atggactcgc       420
     aacctatgtg aggagcagta ttgaaaacgc ggccctggtc tcactttcag cagactgttt       480
     ccaacaaata gttacgaaga ttggtgaact aacagtggta aacatataca agccacctca       540
     aacagaatgg ccacagaacg ttatagaaac tcacccccac cccacaatat acgctggaga       600
     tttcaacagt caccacacmg actggaaata tcgtacaaca gatataaatg gggaaaagct       660
     atcaaactgg gccgaagaaa accatctgca cctggtcttt gatgcgaaag ataaaaatac       720
     cttcaaatct gccatccaca acacagaaac gaatcctgat ctgagcttta ctaccaggaa       780
     ttcccagtcc catcctatcc ccacccgcag gaaaatcmag gagagtttcc cacacagcca       840
     acaccgcccc atccttctgg aaattggaat caacatccct cttatccgct cactcccaag       900
     accccgktgg aaccttcaaa aagcaaactg ggataaattt tctaatgaca ttgatcaaac       960
     cctgcggtgg atccctgcca gatggtataa ctatgataga tttgtaaata taattatagc      1020
     agcggccaaa cgatatattc cccggggcta tcgtaaagaa tatataccag ggtggaatga      1080
     agagacagaa gaactgcatc agagattcct tcaggagaac gatgctgaaa ttgcggacaa      1140
     actccttcga aacctggatg tagctcgaag gaaaaaatgg gaagaaacta ctgaggcatt      1200
     aaactttacc aaatccagca ggaaggcatg gaacctccta agaaaactgg gagacgccag      1260
     tgcacctgaa cgagaagtac caggtgtatc tcccaaccag attgcctcac gaattgtatc      1320
     cttgtcaaga gcacctagag acaagaaacg tacaactttt gttaagcgcc acctgaaatc      1380
     attccgtcag tcagtagaag ctccaaataa aatctctcgg ccatttacag tcgaagaagt      1440
     caatacagcc atcagtaaaa taaagaaagg gaaggcccca ggatttgatg gagtccttcc      1500
     tgaattctta atacacagcg gcaggcggac gagagaatgg ctgagccagt tcttttcaca      1560
     tatcatgcag actggccttg taccacccst gtttaagaaa gctaaaataa tatctttgta      1620
     aagcccggta aaccgaagga taaaccagag agttaccgac cgatttccct cctgagcaca      1680
     acctacaagc tgctggagag gcttatttta gggcgtatag aaccaatact ggaagaacac      1740
     ctaccagtgg agcaagmtgg ctttcgccac aacagaggct gtgaggacca ggtgctcagc      1800
     ctaaccagcc acatcgaagc aggcttccag caasgactca agacgacggt tgccttcgtg      1860
     gatctcactg tggcttatga cactgtgtgg aaagatggct tactatataa actgtatcgc      1920
     actgtcccat gccagaagct cttacgcctc tttaataata tgctacgtga cagaaccttt      1980
     cagataataa tgggtgacaa agcaagtaga gtccgaaaaa taaataacgg cctccctcaa      2040
     ggatcggtgc tggcacctgc acttttcaac ttgtatatat cagacatgcc agaaacaaaa      2100
     ggacgtaaat ttggatacgc tgacgacctg gcaatagccg ttcaagcaaa gmcgatggaa      2160
     gatgctgaca cactcctttc tcaagatctt gaagttgttg ggaagttcta cgctgattgg      2220
     agactgattg tcagcacaag caaaacggaa acaactagtt ttcacttaac aatagggaag      2280
     caacaaaatc tccwaaagta cttctcaaca ataaagtgct cccccataat cagttcccaa      2340
     agtatcttgg tgtcacactg gatcgcaccc tctccttcag gaaacacctg gaagcaacgg      2400
     cagccaaagt caacactcgc aataacatct tgcacaaact gtgtggcagc aggtggggag      2460
     cacatgcttc cactctgaga ggttctgccc tagcacttgt gtactctgcc gcagaatact      2520
     gctcctcttc atggttgaat agcagccatg taagcaaact agatgccaga ctacacgaca      2580
     ccatgcgtac catcagcgga tgcatcaaaa gcacacctgt gcaatggcta cctgtgctga      2640
     gtcacattgc tccacctccg ctacgaagaa agggctgctt ggtccgacag ctgaagagga      2700
     tccaaagtga cccagaccta ccagtgcata aggacattcc tcatctatca ttgagaaggt      2760
     tgaagtccag gaagcctcca ctagtctcag cgcaacaact acaagacgcg gatttcaaca      2820
     tcactgagca atggcggacg gactggagca ctgtcaactt cacagctctc tggcccgacc      2880
     ccacagaaag acccactggt tcgaacttcc ccgccgacaa tggaaagcgc ttaacaggat      2940
     ccgaacatct cacggagtct gtcaggattc tctgtacaag tggggcatat cgcaagtcct      3000
     cagtgcgact gtggtgcttt gcgtcagaca atagaccata ttgtgtatga ctgcaacatc      3060
     aggtctaccc aggccaaaaa cagacctgta taaagtgaca gatgatgcaa tttcatggct      3120
     ggatggttta gacattaata tataaggacc atgttcgctg cttatctttc ttaattcagt      3180
     taacataaat tgtgtaaatt tactgctcat ttcattgttg tttttctatt acttatttta      3240
     gtttcctaac ttaatgttcc tttattagtg ttcattcaat tgttcatctt actgtacgat      3300
     gtatatatct ttcataaatt tgtattaata ttttataaat atttttttcc aaattccact      3360
     gcatcacaca tgtaatggac tttttactgc atacctgtat acttctctgt aattaatgca      3420
     cttaaatttt gatataagct gtttgttgtc tctgcttccc acctggagaa gtgtcattgt      3480
     gtaatgtatc ttcatgtcca agtgtttatg tcatacgata aataaataaa t               3531
//
ID   Vingi-25_LMi repbase;    DNA;    INV; 3325 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-25_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3325
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 315-315 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(466..1575,1491..1694,1702..1917,1921..3123)
FT                 /product="Vingi-25_LMi_1p"
FT                 /translation="QYIHNGYLQTTQYNLGKSGTPNFNSPLHIYIGDLNSR
FT                 HTNWGYNNIDGNGEKLAQWIGKEDLYVSYDAKDLKTFRSARWNTDTNPDLC
FT                 IVSKDTNSTPLPHTKRVLKSFPNSQHRPMVVTVGIEFPLINSIRKPRWNFQ
FT                 KANWSQYTKEIEDNIRWIKPNVENYKRFIGIIIGAAKRNIPRGYRKDYIPC
FT                 WDEVTEKLYQDHSQNGDSEKGKQMLESLNQKRKQRWETLTSEMNFTHSSRK
FT                 AWSLLRKLGSASSKTINEPTLRASQIAQHIKQRAENVPLDQSTAAEVKKEL
FT                 DEVDKNLQPHPYYSNPFTEDEITEAIRSLKIRKASGMDGIFPEFIKHLGKN
FT                 GVTWLRDSTTTYSALVSYHSSSKQLTQEWSNLAKRFYNDILSTGKLPQQFK
FT                 TAHTIAILKPGKPAKEPSSYRPIALLSISFKLLERLIYNRIYKLSDTTIPG
FT                 RLPQQSQLLRAGTGSDIIHRSWLSKRNENISRICRLNSCLRYCMAGWTHSE
FT                 TQESDPMPSTHDSPKHALNRCFKVTSGIEISKSLKIKNGLPQGSVLAPLLF
FT                 NLYTSDMPYTVSQKFGYADDLAIAVQSKSLEEGEKTLTDDLEVLSKYYRRW
FT                 RLCPNPAKTEVCAFHLNNNIANQQLSVLFNQQRVKHNFHPKYLGVTLDRSL
FT                 TYKEHLKNVGQKLKTRNNIIRKLAGSSWGANASTLRTAATSIVYTTAEYCA
FT                 PVWERSHHTNKVDVQLHETMRIITGTLKSTPTPWLSVIANIAPPKLRRQKA
FT                 SFKEWEKIVKINEGKCLPMQDVIKNLPNYRLKSRKPIWNNCYIRGEVTFNL
FT                 KENWKKEWENSVCNHHLISDPSKELKGFNFARKDWTKLNRIRSGHTRCKAM
FT                 LYKWGLTDSPSCDCGAPEQTLDHIIRVCPKRKYSGSAEDFIEATPQAMKWI
FT                 QDLDIDV"
XX
SQ   Sequence 3325 BP; 1184 A; 733 C; 643 G; 765 T; 0 other;
     tgtgacgtgt agacaacctc caagatggta caccccgggc aacgcccttc agaaaaggac        60
     ggcgaagtct acacaaatgg cgaccgtact ggatcagtga tctctcacgg tctttaccag       120
     cagcagcaaa taacgaacga aaacggcatt tctaaatgcc agccaacagg acattttggc       180
     cctacattaa gtatcttgca aattaatgta aaggactttc caaagacgaa tgcgagtacc       240
     taagcagatt ggcaaccgat aataacattg atgtaatagc actcaagaaa ctcaccagcc       300
     accagagctc ctgtaaaaga attaatatta caggatacaa actgataaag acgtcccatc       360
     taccatccat gggtcagctg tatacatcag gaatgctctc agtcactata gaataattaa       420
     tgaagaatgc caagacgata tcgaagccat aaccattgaa gttaacagta tatccataat       480
     ggctatttac aaaccaccca atacaacctg ggtaaatccg gtactcccaa ctttaactca       540
     cccctgcata tatatatagg tgatttgaac agtcgtcata cgaattgggg ctacaacaac       600
     attgatggaa atggtgaaaa actagctcag tggataggaa aagaggatct atatgtgagc       660
     tacgatgcca aggacttgaa aactttccgg tctgcaagat ggaacacaga caccaaccct       720
     gacttgtgta tcgttagcaa ggacactaat agtacccctc taccacacac aaagagagtg       780
     ctaaagagct tcccgaacag ccaacacagg cctatggtag ttaccgtggg tatagaattc       840
     ccattaataa attccatcag aaagccacga tggaactttc aaaaagcaaa ctggtcgcaa       900
     tataccaaag aaatcgaaga caatatacgc tggatcaaac ccaatgtaga aaactacaaa       960
     cgatttatag ggattataat tggtgctgct aagagaaaca taccccgagg ctatcgtaaa      1020
     gattacatac cctgctggga cgaagtcact gaaaagttat accaagacca cagccagaac      1080
     ggtgacagcg aaaagggaaa acaaatgctg gaatcactaa accagaaacg caaacagaga      1140
     tgggaaactt taacatcaga aatgaatttt acccactcca gcagaaaagc atggtcacta      1200
     ttaaggaaat tgggctctgc ttcctccaaa accatcaatg aaccaacttt aagagcatca      1260
     cagatagcac agcacattaa acagagagca gaaaatgttc ctctggacca atcaactgca      1320
     gctgaagtaa agaaagagct ggatgaagtg gacaaaaatc tgcaacctca cccctattat      1380
     tcaaacccct ttacagagga tgaaataaca gaagccatta ggagtctcaa aattaggaaa      1440
     gcctctggca tggacgggat ctttccagaa ttcatcaaac accttggtaa gaatggagta      1500
     acctggctaa gagattctac aacgacatac tcagcactgg taagctacca cagcagttca      1560
     aaacagctca cacaatagca atactcaaac ctggtaaacc tgccaaagag ccatctagtt      1620
     atcggccaat agcattactc agcataagct tcaaactgct ggaaagactc atatacaacc      1680
     gtatctacaa gctatagatg aagtgatacc accattccag gcaggcttcc gcagcaatcg      1740
     cagctgttgc gagcaggtac tggctctgac atcatacata gaagctggct ttcaaagagg      1800
     aatgaaaaca tcagtcgcat ttgtagactt aacagctgcc tacgatactg tatggctgga      1860
     tggactcatt ctgaaactca agaaagtgat cccatgcctt cgactcacga ctctccttaa      1920
     aaacatgctt taaatcgctg ttttaaagta acaagtggaa ttgaaataag taaatccctt      1980
     aagatcaaga atggattacc tcaaggctca gtactggcac cattactatt caacctctat      2040
     accagtgata tgccttacac agtaagccaa aaattcggat atgcggatga tctggccata      2100
     gcagtgcaaa gcaaatctct cgaagaaggt gaaaagactc taacggatga ccttgaagtc      2160
     cttagcaaat actacagaag gtggcgtttg tgcccaaatc cggctaagac tgaagtttgc      2220
     gcttttcacc tcaacaataa tatagccaat caacaattgt ctgtgctatt taaccaacag      2280
     agagtgaaac acaactttca tcctaagtat ctgggtgtta cacttgatag atccctcacc      2340
     tataaagaac accttaaaaa tgttggccag aaactaaaaa cacgaaataa tattattaga      2400
     aaactggcgg gaagttcttg gggtgcaaat gcatccacac tgcgaacagc agcaacatcg      2460
     atagtctaca ccactgccga atactgtgct ccggtctggg agagaagcca ccacaccaac      2520
     aaggtagacg tacagctcca cgaaaccatg cggataatca ccggcacatt aaagtctact      2580
     ccaacaccgt ggctctccgt catcgctaat atagctccac caaaattaag aagacaaaaa      2640
     gcatctttta aagaatggga aaaaatagta aaaataaatg aaggaaaatg tttacctatg      2700
     caggatgtaa taaaaaattt gccaaattac cgtttgaaat cacgaaagcc gatatggaat      2760
     aactgctata taagaggaga ggtcaccttc aacctaaaag agaactggaa aaaggagtgg      2820
     gagaattcag tctgtaatca tcacctcata agtgatccct caaaagaact aaaagggttc      2880
     aacttcgcaa gaaaagactg gactaagctc aatcgcatca gaagtggcca taccagatgt      2940
     aaggccatgc tttataagtg gggactcacg gacagcccaa gttgtgattg tggagcacct      3000
     gagcagacgc tggaccacat cataagagtg tgtccaaaaa gaaaatatag tggctctgct      3060
     gaggacttta tagaagccac acctcaggct atgaagtgga ttcaagatct ggacattgat      3120
     gtgtagccaa aagcttgtct cacatgacac atgtcgtaat tccaagtgtt ctgtcataat      3180
     atatcattga tcactcacat gtaccgaaaa tgagctcttg tacaatcttt tactgatatt      3240
     tgtatatata ttcttgttct ttgtttaatt atatttgtat atatgctgct gtcatatgcc      3300
     atacgataaa taaaataata aataa                                            3325
//
ID   Vingi-26_LMi repbase;    DNA;    INV; 1515 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-26_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1515
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 316-316 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(204..635,490..1149,1098..1412)
FT                 /product="Vingi-26_LMi_1p"
FT                 /translation="TYENNSLSKSDKLIGNMIGNRGFQVIMGNISSQKFLQ
FT                 NGLPQGSVLAPLLFSLYIADMPETACTKFGYADDWXIATRHTNFDTMXETL
FT                 TSDLSALAAYFRKWRLRPNATKTEATCFHLNNRGADRTLEVYFDDTRLNYN
FT                 KEPSIQHTSVNGGLGLMPRRQKRLASISITEERTELWKYTLTTHASTTTRS
FT                 QVSRVTLDRTLSFKTHVTKTAAKVRTRNNLIHKLCGTTWGSTATTLRTSAL
FT                 SLVYSAAEYCAPVWLNSSHVKKIDVELNNTMRIISGTIRSTPNIWLPVLSH
FT                 ILPPKMRRETALLREYNKIEANPELPIHSDIPDLRIKRLRSRHPPLSLDSL
FT                 TGADINSWRREWLQNAPQLATHQLLEKRMAPKRPTTCHLMPCITEAVPGFD
FT                 QPRKIWSTLNRLRTGHGRCADSLFKWGLLSSPACDCGAPKQTIQHIREECS
FT                 ARAFSGDFEEFLMATQKLLNIYKD"
XX
SQ   Sequence 1515 BP; 484 A; 370 C; 313 G; 345 T; 3 other;
     acgagtacta ctaaaaggat tgcaaagaat actcacggcc atcccagtag aaaagccggc        60
     tttcgtscca gccgaagcgt gcagaccaag tcctgctctt actacacata ttgaagcagc       120
     ttccaaaaga aattaaaaac tctgtggcct ttttgacttg tcagcagcct tcgataccgc       180
     ctgggacaag gcctgctcta taaacttatg aaaataattc cctgtcaaaa agtgacaaac       240
     ttattggtaa catgattggt aacagaggat tccaggtcat catgggaaac atcagtagcc       300
     agaaattcct tcaaaatggc ttacctcaag gctcggtatt agccccactg cttttcagcc       360
     tatacattgc tgacatgcca gaaacagctt gtacgaaatt tggctacgct gacgactggg       420
     mcattgcaac taggcacacc aatttcgata caatgsaaga aaccctgaca tctgatctgt       480
     ctgccctagc agcatacttc cgtaaatgga ggcttaggcc taatgccacg aagacagaag       540
     cgacttgctt ccatctcaat aacagaggag cggacagaac tctggaagta tactttgacg       600
     acacacgcct caactacaac aaggagccaa gtatctaggg tcacgttaga cagaacattg       660
     tcatttaaaa ctcacgttac aaaaacagct gccaaggtga gaacaagaaa taacctaatc       720
     cataaacttt gtggaaccac ctggggatca acagcaacaa ccctgaggac gtctgcgctg       780
     agcctggtat actctgcggc ggagtactgt gcaccagtat ggttaaacag tagccatgtg       840
     aaaaaaatcg atgttgaatt gaacaacaca atgcgtatta tatcaggaac cattagatct       900
     acacctaaca tatggctgcc tgtcctgagt catatactac caccaaaaat gcgacgagaa       960
     acagccttgc tcagggaata caacaagatc gaagcaaacc ctgaactacc gatacactca      1020
     gatatacctg atctgagaat caagaggctc cgttcaagac atcctcctct ttctctcgac      1080
     agcctcactg gggctgacat caactcctgg agaagagaat ggctccaaaa cgccccacaa      1140
     cttgccacct aatgccttgt atcactgagg cagttcctgg gtttgatcag ccccgcaaga      1200
     tctggtcaac tctgaaccga ctaagaacag gccacgggag atgtgctgac tcactcttca      1260
     aatggggact gctgtcttcg ccagcatgtg actgcggcgc gcctaagcag accatccaac      1320
     acatcaggga agaatgcagt gccagagcgt tcagtgggga ctttgaagaa ttcctcatgg      1380
     caacccaaaa gctattgaat atatacaagg actagatgtt tgttgtgaat acatgtaatg      1440
     taatatatgt aatgaatgta ccataatgta atcagacact gaaatgtact taaatgccat      1500
     acgctaaata aataa                                                       1515
//
ID   Vingi-27_LMi repbase;    DNA;    INV; 3220 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-27_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3220
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 317-317 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..3139
FT                 /product="Vingi-27_LMi_1p"
FT                 /translation="MSATTTIPNGSCQGQQNCQQNDLNRAIGPVLNVCHLN
FT                 IEGISRSKCDFLSKNLLSNNTDVLALQXTHAEDLKNCARGNIHGYRLVGEI
FT                 GHRTYGVATYARQDLDDVSIIHESCDDDIFVLAVKVSGTTIVNVYKPPNIQ
FT                 WQDTVLPVFEHPSLYVGDFNSHSSHWGYSSDNENGIALAEWAENNNLSLVF
FT                 DAKDSSTFFSARWKRGYSPDLCFCSCDQTLRSLSVTRKVLGTFPRSQHRPV
FT                 LISVGIKIPLIRSFPRPRWNFNKADWEAFTSKLEDNIRFIPPTTENYDRFA
FT                 GLLKATAKACIPRGYRKTYIPGWSQECEDLYNEFISTEDSNTADLLLNSLD
FT                 NARREKWVKKVQSLDFTHSSRKAWSLLRKLSTSVSEKKLPPTHPDPSDIAK
FT                 RIVALSKSKRQQSDRLISYKLNEVKKCQQAPLEVSKPFCLDELHVAISDVK
FT                 TGKAAGIDDIFPEFIKHAGLKTRLWLLNLFNNILKDSSLPKAFKRSKVIAV
FT                 LKPGKPADRADSYRPIALLSVCYKLLERLIYNRIVPILTASIPVEQAGFKQ
FT                 GRNCCDQVLALTSFIETGFEKKCTTSVAFLDLSAAYDTVWKKGLLVKLYNL
FT                 IPCPILLRLLNSMLSGRLIKIYLGNTESGFRQLHDGLPQGSVLAPILFNVY
FT                 TADIPATQSRKFIYADDIAIASQHRDIHVTETTLTSDLTLLRNYFAMWKLK
FT                 PNPNKTEVACFHLNNRMADYKLNISFDGVQLEHSEHPKYLGVILDRSLTFK
FT                 YHLHKTADKVKTRNNILQHLAGSSWGASAKVLRTTALSLVYSAAEYCSPVW
FT                 LNSAHVRDIDVQLNRAMRLISGTLMATPLQWLPILCNIVPPDLRRKEALMR
FT                 EYYKILSTPELPILQDLPPQVSRLKSRKPPLKTAVQLHESGFSPKSNWART
FT                 WDSFNGXNSIWIDDPSKELQGMDLPRREWSLTNRFRTGVGRCNYWKFKWGQ
FT                 ADDQSCDCGADIQTMTHILTNCPLRSFSGGMTELHXVSQEAVQWLKELDLA
FT                 L"
XX
SQ   Sequence 3220 BP; 958 A; 735 C; 666 G; 858 T; 3 other;
     gggggcgaag ttgttcgcgt ccggaagcaa tcctcaaagc tccacgtgcc ccctgggtgg        60
     ttctaaacgg acaacaatct ctggtagctg gtcctgtcac cacggtgatc tcccagctat       120
     gtcagctacc acgacaatcc cgaatggctc ttgtcagggc caacaaaatt gtcaacaaaa       180
     cgatctgaac agagcaatag gtccagtcct aaacgtgtgc catttgaata ttgaagggat       240
     aagtaggtca aaatgtgact tcctcagtaa aaatcttctg agtaacaata ctgacgtcct       300
     tgctctacaa kaaacccatg cagaagatct taaaaattgt gcaagaggca atatccatgg       360
     ctacagactt gtgggagaga taggccatag aacatatggc gtggctacat atgctagaca       420
     ggacttggat gatgtatcta taatccatga aagctgtgac gatgacatat ttgtattggc       480
     agtgaaagtg tctggaacta ccatagttaa tgtctacaag cctcccaaca tccagtggca       540
     agatacggtt ctcccagttt tcgaacaccc ttccctatat gtcggcgatt tcaacagcca       600
     cagtagccat tgggggtact cgtctgataa cgaaaatgga atagccttag ctgaatgggc       660
     tgaaaataat aacctttcct tggtttttga cgcaaaagac tccagcacat ttttctcagc       720
     ccgttggaag cgtggatatt cacctgatct gtgtttttgt tcctgtgatc agacattaag       780
     atctctatca gttacgagga aggtacttgg cacattccca cggtcgcagc acaggccagt       840
     gctgatatca gttgggatta agattcccct aataagatct tttccgagac ccaggtggaa       900
     ttttaataaa gcagactggg aggcatttac ttccaaatta gaggacaaca ttagattcat       960
     ccctcctaca acagaaaatt atgacagatt cgctggactc cttaaagcta cagctaaagc      1020
     ctgtatacct cgaggctaca gaaagacata tattccggga tggagccaag agtgtgaaga      1080
     cctgtataat gaatttatca gcactgaaga ttcaaacact gccgacctcc tactgaactc      1140
     ccttgataat gccaggagag agaaatgggt gaaaaaagtt cagagtttag atttcactca      1200
     cagcagcaga aaggcttggt cacttctgag gaaattgtct accagtgtat ccgagaaaaa      1260
     actgcctccc acacaccctg atccttccga catagccaaa cgaatcgtag cactatccaa      1320
     gtcaaaacgg caacagtctg acagattaat atcctataaa ctaaatgaag ttaagaaatg      1380
     ccagcaggct cccctggaag tatcaaaacc tttttgctta gacgaactgc atgtggctat      1440
     ctctgatgtg aagactggga aagctgccgg tatagatgat attttcccag aatttattaa      1500
     acatgctgga ctcaagaccc gattgtggct tctaaattta ttcaataaca ttcttaaaga      1560
     cagctctcta ccaaaagctt ttaagagatc taaagtaata gctgttttga agcctggtaa      1620
     accagccgac cgtgcagata gctatcgccc aattgcactt ctcagtgtat gttacaagct      1680
     gctcgagaga ctcatctaca atcgtattgt tcccattctc actgctagta tccctgttga      1740
     acaagctggt ttcaaacaag gccgtaattg ctgtgaccag gtcctagcac tgacatcttt      1800
     cattgagact ggtttcgaaa agaagtgtac cacttccgtt gcttttctgg atctctcggc      1860
     agcttatgat accgtctgga agaagggcct cctagtgaag ctttacaatc tcattccttg      1920
     tcctatttta ttgcgacttc tgaactcaat gctaagtggc cgtctgatca agatctatct      1980
     cggcaacacg gaaagtgggt ttagacagct tcacgatggc ctcccccagg gttcggttct      2040
     tgctcccatt ctttttaatg tttacaccgc tgatattcca gctacgcaat ctagaaaatt      2100
     catttatgcc gatgatattg ccatagcgtc acaacacaga gacatccatg tgacggaaac      2160
     taccttaaca tctgacctaa ctctcctcag aaattacttc gcaatgtgga aactaaagcc      2220
     aaacccaaat aaaacggaag tagcttgttt ccatctcaat aataggatgg ccgactataa      2280
     acttaatatc tcgtttgatg gtgttcaact tgaacatagt gaacatccaa aatacctagg      2340
     agtcatcttg gatagatctc tcacttttaa gtaccacctt cataaaacag cagacaaagt      2400
     taaaactagg aataacatat tgcagcactt agcaggatca tcttggggag ccagtgctaa      2460
     ggttttgcgt acaacagctt tgtccctagt ttactctgca gctgaatact gttctcctgt      2520
     ctggctcaac agtgctcatg tgagagacat tgatgtacaa ttaaatagag caatgagatt      2580
     gatcagtggc actctgatgg ctacaccact tcaatggctc ccaatattat gcaacatcgt      2640
     tcctcctgat ctaagacgga aggaagcctt aatgagagag tattataaga tcttgtccac      2700
     tcctgagctt cctatcctgc aagaccttcc accacaggta agccggctga aatcacgtaa      2760
     accacctctt aaaacagctg tgcaactaca tgagagtggc ttctcgccta aatcaaactg      2820
     ggcaagaact tgggattcgt ttaatggama aaacagcatc tggatagacg atccctcgaa      2880
     ggagctccaa ggaatggacc ttcccaggag agaatggtct ttgaccaacc gcttccgaac      2940
     tggtgttggt cgctgtaact attggaaatt caaatgggga caggcagacg accagtcatg      3000
     tgactgtgga gcagacatac aaacgatgac ccacatactt actaactgcc cattacgatc      3060
     attctcagga gggatgaccg aactccatmt agtcagtcag gaagctgtcc agtggttaaa      3120
     ggagttggac ttggctctgt gacagagata tgttttatct tattaattag acactagtat      3180
     atcttactaa agtattatat gtagctgaca ttataccata                            3220
//
ID   Vingi-28_LMi repbase;    DNA;    INV; 3247 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-28_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3247
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 318-318 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(229..1848,1796..2992)
FT                 /product="Vingi-28_LMi_1p"
FT                 /translation="MDLVLERPHTKYGSAIFVKSGLSIQSTGLTSENDVEI
FT                 LTVGFQSCTVTSVYKPPNAEFKFVEPLNFQSQPIKVVAGDFNCHSTSWGYR
FT                 EXDKNGEDLEAWAEQMGLVLIHDPKLPSSFNSGRWRGQYNPDNIFVSNHIA
FT                 QQAKKGVLGPLPHTQHRPVTCTVAAVVKPETVPFKRRFNFKRAQWEKFSIE
FT                 LDKEVIKLEPSPEMYDSFIQLVRTISRRNIPRGCRTSYIPGLDKDSKSLLQ
FT                 KYEHLFETDPFSEETTQAGEELLNAVSATRXQKWCDMVTQLDMKQNSRKAW
FT                 KLLKRLNSDPTSAPPSLVNVTPDQIAHQLLLNGKTKRRTAAKKFQRYTDEE
FT                 DYLGTPFTIEELEVVFKSMKNNKAAGLDDLRPEQIKMFGPVTKQWILNLLN
FT                 NCISKLQIPKIWRKAKVVALLKPGKEPTDPKHFRPVSLLCQLYKVLERLIL
FT                 NRISEHVDKNLINEQSGFRPGKSCCGQVLNLTQYIEDGYERGQVTGVAFID
FT                 LSAAYDTVNHKKLMRKVYSVTKDYRLTQFIQCLLQNRRFFCNSAHSSSSVC
FT                 CKIGGFFVTLHNKKSRWRTLKNGLPQGSVLAPLLYNIYTNDQPISSEVRTF
FT                 IYADDTATAAQGKTFEEVEMKLTAALEDLGKYYDDNHLKPNPGKTQVCAFH
FT                 LRNKEARKKLKIXWRGQQLLHYDTPKYLGVKLDRSLTFKDHCQETKMKVSA
FT                 RNSIIRKLTGSTWGSQPSVLRTSALALCFSAAEYAAPVWRNSTHAREVDTA
FT                 LNETGRIVTGCLRPTPVRKIYEIMGIAPPDIRRRTAAETEKKKQETDPRHP
FT                 LFGHEPRKPRLKSRRSFMSTTTSTALRPGTRRTELWQNSSNERAGENIKEE
FT                 PAEGFHLPYATWKALNRLRTGVSRCKTNLRKWGFTNEDELCECGDVQDPQH
FT                 LLVCRNLPNPCTIEDLHAANDVAIKTAEFWSLRSI"
XX
SQ   Sequence 3247 BP; 1052 A; 730 C; 715 G; 733 T; 17 other;
     cgtaccctgg gcgttaggag aaatcctwac ggcagatcct tccatcacma ggaccaaaat        60
     caagacgtat ctcawccaca acggcttttc tcaaagcmak mtctcgmagk aatatcactg       120
     aataaagaag tsmtactmtc cgacagctgc agtaacacag cttgtkatat tttactgcta       180
     caggagaccc acagagggcc acaacagcaa aggccaaaag taaatggaat ggatcttgtc       240
     cttgaaaggc cacatacaaa gtatggcagc gctatatttg tcaaatctgg cctaagcatc       300
     cagtcaacag gtttaacctc agaaaacgac gtagagatct tgactgtcgg gttccagtcg       360
     tgcacagtga cgtcagtgta caaaccacca aatgcagagt tcaagtttgt ggaacccctt       420
     aattttcaat cccagccaat waaggtggtt gcgggagact tcaactgcca cagcacgtct       480
     tggggctacc gggagastga taagaatgga gaagacctcg aagcatgggc tgaacagatg       540
     gggctggtac taatacatga cccgaagctg ccatcctcct tcaacagtgg gagatggcgt       600
     ggacagtaca acccggataa catctttgtt agtaaccaca ttgcccagca agcaaagaag       660
     ggagttctgg ggcctctccc ccacactcag caccgcccag taacgtgcac tgttgcagca       720
     gtggtgaaac cagaaaccgt cccatttaaa agacggttta attttaagcg agcccagtgg       780
     gaaaagttca gcatagaact tgataaagaa gtcataaagc ttgagcctag cccagagatg       840
     tatgatagtt ttattcagtt agtcagaacc atctctcgta gaaatatccc taggggatgc       900
     agaacatctt acatccctgg actcgataaa gactcaaagt ctctcctaca gaaatatgaa       960
     cacctattcg aaactgaccc attctctgaa gaaacaactc aggcaggcga ggagctmctg      1020
     aatgctgtat cagcaaccag gagwcagaaa tggtgtgaca tggtgacaca actagacatg      1080
     aagcagaata gccgcaaggc atggaagttg ttgaagagac ttaacagcga tccaacaagt      1140
     gctcctccaa gcctagttaa tgtaacacct gaccaaattg cacatcaact actgttgaat      1200
     ggcaaaacta aaagaagaac tgcggccaag aaatttcaaa gatacactga cgaggaagat      1260
     taccttggaa ctcctttcac catagaggaa ttggaagtag tttttaaatc tatgaagaat      1320
     aataaagctg caggcctaga tgacctaaga ccagagcaaa ttaaaatgtt tgggccagta      1380
     acaaaacaat ggatcttaaa tttattgaac aactgcattt caaaattaca aatccctaag      1440
     atctggcgca aggccaaagt tgttgcactt ctgaagcctg ggaaagaacc tactgatcct      1500
     aaacacttcc gaccagtttc tcttctttgc caactgtata aagtattgga aaggttgatc      1560
     ctcaatcgta tctcagaaca cgttgataaa aatctcataa atgaacagtc aggattccgc      1620
     cctggaaagt catgctgtgg tcaggtcctc aacctgactc aatacataga agatggatac      1680
     gaaagaggac aagttacagg agtggcattc atagatctgt cagcagcgta tgacaccgtc      1740
     aatcacaaga agctgatgag aaaggtgtac tcagtcacca aagactatcg cctaacacag      1800
     ttcatccagt gtttgttgca aaatcggagg tttttttgta actctgcata ataagaagag      1860
     ccgatggaga acgctgaaga atggccttcc tcagggtagc gtactggcac ccctgctgta      1920
     taacatctac actaacgacc aaccaatcag ctctgaagta agaacgttta tttatgcaga      1980
     tgacacagca actgcagctc aaggcaaaac ctttgaggaa gtggagatga agctgacagc      2040
     agccctcgag gacctcggca agtattatga tgataatcac ctaaagccaa atcctggaaa      2100
     gacgcaggtc tgtgccttcc acctgagaaa caaggaagcc agaaagaagt taaaaattam      2160
     ctggagaggg caacaactgc ttcactatga tactccaaaa tacttgggag taaagttaga      2220
     ccgaagcctc acattcaagg atcattgcca ggaaaccaag atgaaagtat ctgcccggaa      2280
     cagcatcata cgtaaactca ctggctccac ctggggatca cagccaagtg tgctccgcac      2340
     atctgccctg gcactgtgct tctctgcagc ggagtatgca gcaccagtct ggagaaactc      2400
     aacacatgcc agagaggtgg atacggcact aaatgagact ggacgcatag tgactggctg      2460
     ccttcgacca actcctgtca gaaaaatcta cgaaattatg ggcatagcgc ctccagacat      2520
     acgcagaaga acagctgcag aaacagagaa aaagaaacag gaaaccgacc ccagacaccc      2580
     cctcttcgga catgagccaa gaaaacctag gcttaagtca aggaggagct ttatgagcac      2640
     aacaacatca actgcattga ggcctggaac tcggagaaca gagttatggc agaattcgtc      2700
     aaacgaaagg gccggagaga acatcaaaga ggaacctgcc gaaggatttc atctgccgta      2760
     tgcaacatgg aaggcactaa acagactgag gacaggagtg tcacgctgca agacgaatct      2820
     cagaaagtgg ggcttcacaa acgaagatga gctctgtgag tgtggcgatg tgcaggaccc      2880
     acaacacctc ctggtctgca gaaacctgcc caacccctgc accatagagg acctacacgc      2940
     agcaaatgat gtggccatca agacagcaga attttggagc ttgcggtcca tctagcagaa      3000
     actagcagcg tcctacagaa ttagtcacct ctttccatat tttatgtttc tagtttgtaa      3060
     tttgtgtatt ttaattgtat atttattgaa ttttgcattc ttggattgta atttgctcaa      3120
     tgtaattgta cattgtaaac atatatttag tgaatttggt gtccctagat tgtaaattgt      3180
     ttattataat tgtatattta ttgatcgaaa gatatgtctt agtcctgcac acgtaaataa      3240
     ataaaaa                                                                3247
//
ID   Vingi-29_LMi repbase;    DNA;    INV; 3301 BP.
XX
AC   .
XX
DT   07-APR-2014 (Rel. 20.01, Created)
DT   07-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-29_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3301
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 319-319 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(124..492,496..3126)
FT                 /product="Vingi-29_LMi_1p"
FT                 /translation="MEASLSDNGSCRSCMTRNIGPSLRICQLNIEGLSRSK
FT                 CETLSRILRERNIDVVAIQETHVTSVADLKARGRIPGYEILGATYHHSHGC
FT                 ATYIRSNIENAQVLHSGIDSWNPYCHYKSGRNYNNCLQTSTRPVASRGTTP
FT                 LPHPALYLGDFNSHHTMWKYNISDQNGVALTDWMEENNLSLIFDAKDKGTF
FT                 RSAAWGRDSNPDLCFSTQNHSGQPISITRTVLADFPRSQHRPVIYEIGIQI
FT                 PVIRSVPRPRWNFQKANWELFSQELDKIVRWIPATPKNYNRFVGAVIAAAK
FT                 KCIPHGYRKEYIPGWNNDCEKLFETYVKHGETDVADELLQRLDEARRNRWI
FT                 KTTAEMDFKKSSRKAWSLLKKLGGSKPPIKVARTVLPDQIXSRIVSLSRAP
FT                 RDKHHTQKVKREYRNIQRTTPHETEYSRSFTIEELEAALSDVKTGKAPGYD
FT                 GIHPEFLTRCGKETKKWLTKFYSCILTSGCLPKAFKITKIIAVLKPNKPSD
FT                 KAESYRPIALLSCCYKLLERLLLNRLSPRILEVIPPEQAGFRPNRSCTDQV
FT                 LSLTTYIEAGFQKQKKTAVAFIDLTAAYDTVWKEGLLHKLIKVIPCRTTLK
FT                 LINNMLSDRYFQVIQGNDISKQRKLNNGLPQGSVLAPMLFNLYISDLPETI
FT                 SRKFSYADDMALAIQSKQFEETENILTTDLNKMHEYFTKWRLIPNPTKTEV
FT                 SCFHLNNRMAGYELKVHMNNSQLRYQPHPKYLGVTLDRTLSFKRHLENVSN
FT                 KISSRNNLIQRLCSTNWGASADTLRTSALALVYSAAEYCAPVWLNSKHVKK
FT                 VDTQLNAAMRTITGCIKTTPLYWLPTLSHIAPPSLRRQEALMKEYAKIMNN
FT                 PLLPIHEDIPTLERTRLCSRNPPLRLAQQLSAANFSMDIKWHESWTDSASP
FT                 DNRELICPSEKPKGFELPRQLWKTLNRIRTGHGLCAHNLHKWGKLPSPSCD
FT                 CGEPNQTIQHIAQDCELRAYQGSRADFFNATPPCLEWIANLDVRI"
XX
SQ   Sequence 3301 BP; 1089 A; 777 C; 686 G; 748 T; 1 other;
     ggtgtaatct agctcgcgtc cgtggaagaa ctccacacgt gcaccctggg taacgctaaa        60
     tgagctagag cgatagctgg cgccagactt atcttctcca gaggatctcc tggcctcgcg       120
     cacatggaag caagcctgtc agataatggc tcctgcagga gctgcatgac aagaaatatc       180
     ggacctagcc tccgaatttg ccaactaaat attgaaggac taagcagatc caaatgtgaa       240
     actctgtctc gaattctccg tgagaggaac attgatgtcg ttgctataca agagactcat       300
     gtaaccagtg tagccgatct taaggcaaga ggcagaatac caggatatga gatactaggt       360
     gcaacgtacc atcattcaca cggttgtgct acttatatcc gcagcaacat agaaaatgcc       420
     caagtactgc actctggcat tgacagctgg aatccatact gtcactataa aagtggaaga       480
     aattacaata actaatgttt acaaacctcc actcgtccag tggcctccag aggtactacc       540
     ccacttcccc atccagctct gtacttggga gatttcaata gtcaccatac aatgtggaaa       600
     tacaacatca gtgaccagaa tggcgttgca ctcacagact ggatggagga aaacaactta       660
     agtctcatat tcgatgcaaa ggataaggga actttcagat cagcagcatg gggtagagac       720
     tccaatccag atctatgttt ctcaacccag aatcacagtg gccaaccaat aagcataacc       780
     agaacggtcc tagcagattt cccacgcagt caacatcgtc cagtcatata tgaaataggg       840
     atacaaatcc ctgtgatccg atctgtacca agacctagat ggaatttcca aaaggcaaac       900
     tgggaactgt tctcccaaga acttgacaag attgtaaggt ggatcccagc aacacctaaa       960
     aattacaaca gattcgtagg tgcagtgatt gcagcagcaa aaaagtgtat cccgcacggg      1020
     taccgcaaag aatacattcc aggctggaac aacgattgtg agaaactttt tgaaacatac      1080
     gtaaaacatg gtgagacgga cgtagccgat gaactgctac agagactgga cgaggctcga      1140
     agaaatagat ggattaagac aactgctgaa atggatttta agaagtcaag cagaaaagct      1200
     tggagtttac tgaagaagtt ggggggaagt aaaccaccaa tcaaagtagc tcgtacagtt      1260
     ctaccagacc agatakcaag tcgaattgta tcactatcca gagcaccacg tgacaaacac      1320
     cacacacaaa aagtaaaaag ggagtacaga aacatacagc gaacaacacc tcatgaaact      1380
     gaatactctc gaagcttcac cattgaagaa ctagaggcgg ctctcagtga tgtcaaaacg      1440
     ggtaaggcgc ctggctatga tggaatacac cctgaatttc tgactcgatg tgggaaggaa      1500
     acgaagaaat ggctgaccaa gttttactca tgcatactaa catcgggctg tctgccaaaa      1560
     gcttttaaaa ttactaaaat aattgctgtg ctgaaaccaa acaaaccatc agataaagcc      1620
     gaaagttacc gccctatcgc tcttctcagc tgctgctaca aacttctgga acggctgctc      1680
     ctcaacaggc tgagtccacg aatcttagaa gtcatcccac cagaacaggc aggtttcaga      1740
     cccaatagga gctgcacaga ccaggttcta agtctaacca cttatattga agcaggtttt      1800
     caaaaacaaa aaaagactgc ggtagctttc atagacctaa cagctgccta tgacactgta      1860
     tggaaggaag gacttctaca caagctgata aaagtaatcc cctgccgtac gacactgaaa      1920
     cttatcaaca acatgctttc ggatagatac ttccaggtga tacagggtaa tgacataagc      1980
     aaacagagga aactgaataa tggactgcct caaggatcag tgttagcacc gatgctcttt      2040
     aatctctaca tctctgacct gcctgaaacc atttcaagga agttcagcta tgcagatgat      2100
     atggctctag ctatccaaag caagcagttt gaagaaactg agaacatcct cacaactgac      2160
     ctaaacaaaa tgcatgagta tttcaccaaa tggaggctaa taccaaatcc taccaagact      2220
     gaggtcagct gttttcattt gaacaacaga atggcgggat atgagctgaa ggtccatatg      2280
     aataacagtc aactgcgata tcagccacat ccaaagtacc tgggggttac tctagatagg      2340
     accttatcct tcaaaagaca cttggaaaat gtatccaata aaataagctc acggaacaac      2400
     ctcattcaga ggctctgcag cactaactgg ggagcatcag cagacacact aagaacttct      2460
     gcacttgcct tagtgtactc tgcagccgag tactgtgcac cagtatggtt aaacagcaag      2520
     catgtaaaga aggtggacac ccagctcaac gctgctatga gaaccataac tggatgcata      2580
     aagactaccc cactatattg gcttccaaca cttagtcata tagctccacc ctccctgcga      2640
     agacaggaag ctctgatgaa ggaatatgca aaaataatga ataaccccct acttcctatc      2700
     catgaagaca tcccaacttt ggaaagaaca cgactctgct ctagaaatcc ccctctaaga      2760
     ctggcccagc aactgtcagc tgccaacttc agcatggata ttaaatggca cgagagctgg      2820
     actgatagtg cctcccctga caaccgtgaa ctgatctgtc catcagagaa acctaagggc      2880
     tttgaacttc cacgacagct atggaaaacc ctaaacagaa tcagaacagg acatggacta      2940
     tgtgcacaca acctacacaa gtggggaaag cttcccagcc ctagctgtga ctgtggggaa      3000
     ccaaatcaaa caatacagca catcgcccag gactgtgagt taagagccta ccagggtagt      3060
     cgggctgact tcttcaacgc cacaccgcct tgcctcgaat ggatcgccaa tctggacgtc      3120
     agaatttgaa gactagtgta acacataata tctgctgtga tgttactttt tactgtgtgt      3180
     atgtattata ttttatctga aaatgtatcc ttcacttatg tattttatag tgtattttaa      3240
     catataattt cataatgtaa cgagtgtaaa ccatgtgtgt agcgccatac gctaaataaa      3300
     a                                                                      3301
//
ID   Vingi-2_LMi repbase;    DNA;    INV; 2207 BP.
XX
AC   .
XX
DT   03-MAR-2014 (Rel. 19.12, Created)
DT   03-MAR-2014 (Rel. 19.12, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-2_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2207
RA   Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3496-3496 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           31..2100
FT                 /product="Vingi-2_LMi_1p"
FT                 /translation="MNKELTSKLHEYLRLFDEDPFSTDTIRSGMTLSQELA
FT                 KAKQKRWSEMVESMDMSKSSRKAWQLLKRLSNDPTTPKERFNVTPNEVAHQ
FT                 VLLNGKTEGRKEKIRITRHNLETNDLSAKFTLEELKAAIKMCKSGKAPGLD
FT                 DILVEQIKHFGPVTMGWLLRFYNNCLTRRHIPKIWRRTRIIAILKPGKPAS
FT                 DAKNFRPISLLCHLYKVLERMLLNRLSPVIEPQLIPQQAGFRPKKNCTAQI
FT                 LNLTQNIEDGFERGLITGAVFVDLSAAYDTVQHKIMLHKLYQLTRDYDFTS
FT                 FIGTLLQNRKFYVELDGKKSRWRIQKSGLPQGSVLAPTLFNIYSNDQPQPP
FT                 NTKSFIYADDLALVSQAKDFETVERHLTYGLKTLSAYYEKNHLKPNPAKTQ
FT                 VCAFHLRNKDANKKLKVIWNGTELEHCHNPKYLGVTLDRALTFRKHCLNIK
FT                 QKVSARNNIIRKLTNSGWGAQPTVLRTTAIALCYSAAEYACPVWYTSVHAR
FT                 HVDVALNETCRITTGCLRATPTHKLYNLAGIAPPDIRREVAANIERXKVEQ
FT                 NAAHPLHGHQTPPSRLKSRKSFMKTTVNCSTSPSTARQNLWTTRNADIATW
FT                 IPPLEALPPGENLPWKTWKSLNRLRSGVGRTKDNMARWNYLGDESTLCECG
FT                 SEQTTKHLYSCPQCPVSCTLEDLLQAKENAVELANFWSDCI"
XX
SQ   Sequence 2207 BP; 724 A; 529 C; 461 G; 492 T; 1 other;
     agaggctgcc gtacctcata cattccgggc atgaacaagg aattaacgtc aaaactgcac        60
     gaatacctta gactgtttga tgaagaccct ttcagcacgg atacaataag atcaggaatg       120
     acactatccc aagaactggc aaaggccaaa caaaaacgat ggtctgaaat ggtggagagc       180
     atggacatgt ctaagagtag taggaaggct tggcaactgc tcaaacgact cagtaatgac       240
     cctactacac ctaaagaaag atttaacgtt actccaaatg aggtcgccca tcaggtgctg       300
     cttaatggaa aaactgaagg aagaaaggaa aaaatacgga taactcggca caatctagaa       360
     acaaacgacc tgtccgctaa gtttactctg gaagaactga aagctgctat taaaatgtgc       420
     aaatccggta aggcaccagg acttgacgat atattggtag agcagataaa gcatttcgga       480
     cctgtgacta tgggatggct actgcgattc tataataact gcctaacacg taggcatatt       540
     cctaaaatct ggaggaggac caggatcatc gccatcctga aacccggcaa gccagcttcc       600
     gatgccaaga acttccgacc tatatctctt ctgtgccatc tctataaagt ccttgaaaga       660
     atgctgctca atcgtctcag ccctgtcatc gagccacaac tgataccaca acaagctgga       720
     tttagaccaa agaaaaactg tacagcacaa atcctcaatc tgacacaaaa tatcgaggat       780
     ggcttcgagc ggggtttgat tacaggagca gtattcgtgg atctctccgc agcctatgac       840
     actgtgcagc acaaaattat gttgcacaaa ctatatcagc taacgagaga ctatgatttt       900
     accagcttca taggcacttt actccagaat cgtaaattct atgttgaact agatggcaag       960
     aaaagcagat ggagaataca gaaaagcggt ctgccccaag gcagtgtcct agcaccaacc      1020
     ttgtttaaca tctatagcaa cgaccagcca caacctccta acacaaaaag cttcatctac      1080
     gctgatgatt tggcactagt atctcaagcc aaagatttcg aaactgtaga gagacatcta      1140
     acatatggtc ttaaaactct ttcagcatac tatgaaaaga accacttgaa gcccaatcca      1200
     gctaaaactc aagtatgcgc ttttcaccta cgaaacaaag acgccaacaa aaaattaaaa      1260
     gtcatatgga atggcacaga actggagcac tgccataacc caaaatacct gggggtcaca      1320
     ctggatcgtg cgttgacatt caggaagcac tgcctaaaca taaaacaaaa agtatccgca      1380
     cgcaataaca tcatcagaaa actcacaaac agcggatggg gtgcccaacc gacagtactc      1440
     agaacaacgg caattgcact atgctactct gctgctgaat acgcctgccc tgtttggtat      1500
     acatctgtcc atgccaggca tgtggatgtt gccctcaacg agacctgtag aataacaaca      1560
     ggatgcctga gggcaacgcc tactcacaaa ctatacaacc tcgcggggat agccccacca      1620
     gatataagac gggaagttgc cgcaaatata gagagamgca aagtagaaca aaacgctgct      1680
     cacccgctac atggacacca aactccccca agcaggctga aatccaggaa gagttttatg      1740
     aaaactactg tcaactgtag tacatcacct tcaacggcac gacaaaacct gtggacaacc      1800
     agaaatgctg atatcgcaac atggattcca cctctggagg ccctcccccc aggcgaaaat      1860
     ctgccgtgga aaacgtggaa gtccctcaac agactaagaa gcggggtggg tagaacaaag      1920
     gacaacatgg ccagatggaa ctacctcggg gatgaatcaa ctctctgcga atgtggatcc      1980
     gaacaaacca ccaagcacct gtacagctgt cctcagtgcc cagtatcctg cacgctggag      2040
     gacctattgc aggccaagga gaatgccgtc gagcttgcta atttttggtc tgattgtatt      2100
     tagtggtttt gtaatttgtt tatatataat ctcttttgtt ttgtattata gttgtactct      2160
     tgtctttgac cttttgtatg caacgctttt gacacgaata aataaat                    2207
//
ID   Vingi-30_LMi repbase;    DNA;    INV; 3268 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 20.01, Created)
DT   10-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-30_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3268
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 320-320 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           83..769
FT                 /product="Vingi-30_LMi_1p"
FT                 /translation="QPANPSTPKASAFEMATQNVSKSSLSGSALTIVSVNI
FT                 EGLSNQKEELLKDLCQRSCCDILCIQETHRDSQDRRPKVLGMTLVAERPHS
FT                 QYGSAIFAKPSLDINSTGITAKNNIEIITVELRGITVTSVYKPPTETFIFQ
FT                 ETPNFHSQPLKCVIGDFNSHSTCWGYSEDDDNGVAVLNWADSRSMTLIHDS
FT                 KLPPSSTVLDGRGIPILYLPDTITQLCMKSYVRHPKVST"
FT   CDS           join(899..1840,1798..3036)
FT                 /product="Vingi-30_LMi_2p"
FT                 /translation="RFVRAVNKCSRMSIPRGCRTTYVQGLSPEVASDLDHY
FT                 YTAFEQDPFSEETTSRGQQLLKSISAAKSEQWIKLMEETDFSKNSQKAWKL
FT                 LRRLNNEPASAALHANITANDIAHQLLINGKLDNRNFKPKSKNMPISVTDL
FT                 SRPFCLEELQSAISKCKTGKAAGLDDIRNEQIKRFGPTTQKWILNLFNNCL
FT                 FSGRIPKIWRKAHVIAILKPGKENNDAKNYRPISLLCHLYKILERMVLNRL
FT                 TEEIDSVLIPQQAGFRPGKSCTSQVLSLTQYIEDGFESRMITGVAFVDLSA
FT                 AYDTVNHKLLLKNFMTSLKTPVITPEKFYDITKDSSLTTLIANFLSNRRFF
FT                 VEFQGRRSRWRLQRNGLPQGSVLAPILFNIYTNDQPLPSFTRSFLYADDLA
FT                 LATHGKDFHDVENNLSGALEELGQYYKNNNLKPNPNKTQVCAFHLKSRQAN
FT                 QRLNISWNGSQLEHSFSPKYLGVTLDRTLTFKTHCHNTKMKVSARNNMIRK
FT                 LRGSNWGAQPATIRTSALALCYSAGEYAAPVWHNSCHARQVDTALNETCRI
FT                 ITGCLRPTKVEQLYHLAGIAPPDIRREAAAQAEGHRALTSHTHPLFGLSPA
FT                 PTRLKSRKSFVRVYVNNKNTNQAIDMWRKRAEIAPLGWRKPKEELPPGHNE
FT                 SWCTWKSLNRLRTGVGRCKVSLEKWGYVSGPSTCECGEEQTMSHLRNCHLC
FT                 PSSCTEEDLRLANPNALDVARFWAKTI"
XX
SQ   Sequence 3268 BP; 999 A; 755 C; 683 G; 831 T; 0 other;
     gggggacatg gaaggagcct ccccgcaggg tgtggatatg tctgtcttaa tcacatccgg        60
     gcgtcccctg gtaacggcat aacagccggc taatccttcc actccaaagg catcagcatt       120
     cgaaatggca acccagaatg tatcaaaatc gtccttatca ggatcagctt tgactatagt       180
     ctctgtgaat atagagggct taagcaatca gaaggaggaa cttcttaaag atttatgcca       240
     gcgcagttgt tgtgacatac tctgcatcca ggagacacat cgagactctc aagatagacg       300
     ccccaaagta ctgggcatga cacttgtcgc agaacgacct catagtcagt atggcagcgc       360
     catttttgca aaacccagcc tcgatattaa ctccactggc atcactgcaa agaacaatat       420
     cgaaatcata acagttgaac tgcgcggtat cacggtaaca tcagtttata aacctcccac       480
     agaaaccttc atctttcaag aaactcctaa tttccatagc cagccactta agtgtgttat       540
     aggcgacttc aatagccata gtacctgctg gggttatagt gaagatgacg acaatggagt       600
     cgcagtactg aattgggcag attccagatc tatgacactt atacacgata gtaagctgcc       660
     accatcttca actgtgctcg atggacgtgg catcccgatc ttatatttgc cagacaccat       720
     cacacagctg tgcatgaagt catatgttcg ccatcccaaa gtctcaacat aggccaatca       780
     tgtgccaatc ttcctgcaga cttgtttcat ttcgctagat acaactttaa aaagaaactg       840
     gagaagttgc actctccttg atcggagata aatatttgcc caggcctgaa caatatgacg       900
     ctttgtaaga gctgtgaaca aatgttccag gatgtccatc cctcgtggat gtcgaactac       960
     gtatgtgcaa ggattgtccc cagaggtagc ctcagacctc gaccactact acacagcatt      1020
     tgaacaagac ccgtttagcg aagaaacaac atctcgtgga cagcagttac tcaaatcaat      1080
     atcagccgcc aagtcggagc agtggatcaa gcttatggaa gaaactgatt ttagcaagaa      1140
     cagtcaaaaa gcctggaaac ttctcagacg cctgaataac gaaccagcta gcgcagcgct      1200
     tcatgcaaac ataacagcca atgatattgc ccatcaacta ttaataaatg ggaaactgga      1260
     taacagaaac ttcaagccaa aatctaagaa catgcctatt tctgttacgg acttgtctag      1320
     acctttctgt ttggaggagc tacagagtgc gataagtaag tgtaaaacag gaaaggctgc      1380
     tgggctggat gatattagga atgagcaaat aaagcgtttt ggaccaacaa cacaaaaatg      1440
     gattttaaat cttttcaata actgcttatt ctccggaagg atccccaaaa tctggaggaa      1500
     agctcatgtc atcgctatcc ttaaacctgg caaagagaac aatgacgcta agaattaccg      1560
     cccaatatct cttctttgcc acctgtacaa aatcctggag agaatggttc tgaaccgctt      1620
     gacggaagaa attgactctg tgctcattcc ccaacaggct ggctttagac cgggtaaaag      1680
     ctgcacgtct caggtcctca gtcttaccca gtacattgaa gatggttttg aatcacgtat      1740
     gatcactggt gtggcctttg ttgacctgtc tgctgcatac gacaccgtga accataaatt      1800
     actcctgaaa aattttatga catcactaaa gactccagtc taaccacctt gatcgccaac      1860
     ttccttagta acaggagatt tttcgtggaa tttcaaggac ggcgcagtag atggagacta      1920
     caaagaaatg ggctacccca gggcagtgtt ctagccccta tactctttaa tatatatacg      1980
     aacgatcaac cacttccatc attcaccaga agttttctat atgcagatga tctcgcattg      2040
     gccacccacg gaaaggattt ccatgatgtc gaaaataatc tgtctggagc attggaagaa      2100
     ctaggacagt actacaaaaa taataatcta aagcctaacc ctaacaaaac gcaagtctgt      2160
     gctttccatc taaaaagcag acaggccaac caacgactaa atatttcatg gaatggctct      2220
     caacttgaac attccttttc cccaaagtat cttggggtga ccttagaccg gaccttaacc      2280
     tttaaaacgc attgtcataa caccaagatg aaagtatctg ccagaaataa tatgatacga      2340
     aaactaaggg gatctaactg gggagcacag ccagccacta ttcggacttc agctttggcg      2400
     ttgtgctatt cagcgggcga atatgcagcg cctgtctggc ataattcctg ccacgctagg      2460
     caagtggaca ctgctttgaa tgagacgtgt cgcataatta ctggctgcct gagaccaacc      2520
     aaagtggagc agctgtatca tctagcaggt atagctccgc ctgacatcag gcgtgaagct      2580
     gctgcgcaag cagaaggaca tagagccctg acttctcata ctcacccact gtttggccta      2640
     tcaccagcac caacacgctt gaagtctaga aaaagttttg taagagtcta tgtgaacaac      2700
     aaaaacacaa accaagcgat agacatgtgg agaaagagag cagaaattgc tcctctaggc      2760
     tggagaaaac ctaaagaaga gctacctccc ggtcataatg agagctggtg tacctggaag      2820
     tcgctcaaca ggttacgaac tggtgttggg cggtgtaaag taagcctcga aaaatgggga      2880
     tacgttagtg gaccctcaac ctgtgagtgt ggcgaggagc agacaatgtc tcacctgcgc      2940
     aactgtcatc tgtgcccgtc atcctgcacc gaagaggatt taaggctggc caaccctaat      3000
     gccttggacg tagcccgttt ctgggctaaa acaatttaag ttaatgactg ttactttgtt      3060
     aaatataaat gtatttgtaa ttgtttatat atgttttgta tgctaacttt aattctttga      3120
     actgtgccca cttctgggtg aaaacaattt taattactaa tttatcttta atgttaatgc      3180
     ctactgtcca ggcacttgtt tattctattg catgtaaact ttcttgaaat taacttgtaa      3240
     ttgatgcctt tgacacgaat aaaaaaaa                                         3268
//
ID   Vingi-31_LMi repbase;    DNA;    INV; 3070 BP.
XX
AC   .
XX
DT   10-APR-2014 (Rel. 20.01, Created)
DT   10-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-31_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3070
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 321-321 (2015).
XX
DR   [1] (Consensus)
XX
CC   >95% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(130..951,955..1167,1171..1446,1395..3041)
FT                 /product="Vingi-31_LMi_1p"
FT                 /translation="MKTNKTPPKRSFPRPLVTISINIEGISRDKEVLLSDL
FT                 CKEYQCDFLLIQETHRGITRPSPKIDGMKMILERPHEQYGSAIFARPGINV
FT                 TSASLTDRDDVEILTVRTQQYSVTSVYKPPDSTFVFTEPANFSYQDINFIL
FT                 GDFNCQSTAWGYKETNSSGAELEKWAEVHDLLLIHDPKLPSSFNSGRWKKG
FT                 YNPDNIFVSKKLAAQSEKLIGEPIPHTQHRPIICTVSAVVKPEQVPFKRRF
FT                 NFKKANWKKFREIIDLEVTKILHNLRCMTLLSVFRMCLGRQYARMQNTVYR
FT                 WTSEDAKPLLERYQSSSTGNELMSVIAENRKAKWRDLVENLDMKVNSRGLG
FT                 NCRTSTVMPQSQTINLLMSLQTSRHHTLLNGKPRQKIPQPLTRVLAEKPHL
FT                 KAPFTMSELTAAISSLKTNRAPGIDELRVSKLKTLAVIPYSGCTESQQIKN
FT                 LGSNTLQWLLDLMNACVERLHIPKMWRKARVVALLKPGKDPNDPKNFRPVS
FT                 LLCHCFKILERLTLSRIENVLEQQIIPQQAGFRQGKSCCGQVLNLTQHIED
FT                 GFERKEITGVAFIDLTAAYDTVNHRRLLRKVYDVTKDYHLTSLIATFLQNR
FT                 RFFVCLQGKKSRWRNQRNGLPQGSVLAPALYNIYTNDQPVPNTTRQFMYAD
FT                 DTAVAAQGTNFLDVEEKLSSTLESLSQYYEANHLRPNPSKTQVCAFHLKNA
FT                 EANRELNVTWRGERLAHCPTPKYLGVTLDRTLTYKHHCNATREKVSARNNI
FT                 IRKLTNGSWGANPKVLRTSALALSVSAAEYAAPVWSSSTHARKVDIAVNEM
FT                 ARIVTGCLKPTPVHKMYLIMGIAPPNIRRDIAAEAEKTKQEKDMRHPLYGH
FT                 QPADRRLRSRKSFLSRTRALEGSAAENRIARWEMDLRSPHKAAKEELAPGG
FT                 DLPYTVWRTLNRMRVEVPKCKTNMQRWGFLKDNENTLCLCGAVQDPQHLLI
FT                 CPYLEKPCTMEDLWEANDKAISAANFWKLEV"
XX
SQ   Sequence 3070 BP; 978 A; 718 C; 707 G; 667 T; 0 other;
     gggtgcaatg aaggagcctc cccaaagatt gcgacagcaa gataaaaaaa aaaccgcaat        60
     cgggcgcacc ccgggcaacg ttgatcatca gcggctaatc cttcaacaac cggaacggac       120
     ttctgagaaa tgaagaccaa taagacccca cccaaacggt cttttccaag gccacttgtg       180
     acgatatcga taaacattga aggaatatcg agagacaaag aagttttatt atctgacttg       240
     tgtaaagaat accaatgtga cttcctcctg attcaagaaa ctcatcgggg cattacaaga       300
     ccttcaccca aaatagacgg aatgaagatg atcctggaga gaccacatga acagtacggt       360
     agtgccattt tcgcgaggcc aggaattaac gtcacatctg catcactgac tgacagggat       420
     gacgttgaaa tattaactgt tcgaactcag cagtatagcg ttacctctgt gtacaagcct       480
     ccagactcta cttttgtctt cactgagcct gctaacttca gttaccaaga cattaatttt       540
     atattgggcg atttcaactg tcagagcact gcatggggtt ataaagaaac caacagcagt       600
     ggagcggaac tagagaaatg ggctgaggta cacgacctac tactcataca cgacccgaaa       660
     ctgccaagct cctttaacag tggcagatgg aagaaaggat acaatcctga taacatcttt       720
     gtcagcaaga aactcgcagc tcagtctgaa aaactgattg gggagccaat tccccatacg       780
     caacatcggc ccataatttg cacggtcagt gcagttgtta agcctgaaca agttcctttc       840
     aaaagaagat ttaactttaa aaaggccaac tggaagaaat tcagagagat tattgattta       900
     gaagtaacaa aaatcctcca caacctgaga tgtatgactc ttttgtcagt ctagttcaga       960
     atgtgtctag gaagacaata cgcgaggatg cagaacacag tatatcgctg gacttctgag      1020
     gatgcaaaac cattactgga aagataccag agctcttcga caggcaatga actcatgtca      1080
     gtcattgcag agaaccgcaa agccaaatgg cgtgaccttg tggagaacct ggacatgaaa      1140
     gtgaacagta gagggcttgg aaactgctaa agaacctcaa cggtgatgcc acaaagtcaa      1200
     acgataaatt tactaatgtc actgcagacc agtcgccacc acactctcct gaatggcaaa      1260
     cccaggcaga aaataccaca accgttaacg cgtgttctgg cagagaaacc tcacctcaag      1320
     gcaccattca caatgtcaga acttacagca gctatttcca gcctgaagac taacagagct      1380
     cctggcatcg atgaactgag agtcagcaaa ttaaaaacct tggcagtaat accctacagt      1440
     ggctgttaga tctgatgaat gcatgcgtag aaaggcttca catcccaaag atgtggagga      1500
     aagcccgcgt ggttgctctt ctgaaaccgg gaaaggaccc taatgatcca aaaaacttcc      1560
     gacctgtgtc tcttttgtgt cactgtttta agatcttgga acgcctgacg ttaagtcgca      1620
     tagaaaacgt cttagaacaa cagatcatcc cacagcaggc aggtttccga caaggcaaat      1680
     cgtgctgcgg tcaagtcctg aacctgaccc aacatatcga ggacggtttt gagagaaaag      1740
     agatcacggg agtggcattc atagacctta cagctgcata cgatactgta aaccatcgga      1800
     ggctcctcag gaaagtatat gatgtaacaa aagactatca tttaacatca ctgattgcta      1860
     ctttcctgca aaataggaga ttttttgtct gtctccaggg taagaagagc aggtggagaa      1920
     atcagaggaa tggcctgcct cagggaagcg tcctcgctcc agctctgtat aatatataca      1980
     caaatgacca accagtgcca aacaccacgc gccaatttat gtatgccgat gacactgcag      2040
     ttgcagcaca aggtacgaat tttctggatg tagaggagaa attatccagt accttggaat      2100
     ccctctccca gtattatgag gcaaaccacc tacggccgaa cccttccaag acgcaggtct      2160
     gtgctttcca tttaaagaac gcggaggcaa atagggaatt gaatgttaca tggagaggtg      2220
     aacgactcgc gcattgtccg acgcccaaat atctcggtgt cacactggac cgcacactga      2280
     cctataaaca tcattgcaat gccacaaggg agaaagtctc agcgagaaac aacatcatca      2340
     ggaaattaac taacggatcc tggggtgcaa acccaaaagt cctgagaacc tcagcccttg      2400
     cgcttagtgt gtcagctgcg gaatacgccg ctccagtatg gagttcgtca acacacgcga      2460
     gaaaagttga catcgcggtg aatgaaatgg cacggattgt gactgggtgc ctgaaaccaa      2520
     caccagtaca caagatgtac ttaattatgg ggatcgcacc gcccaacata cgacgtgaca      2580
     ttgctgccga agctgaaaaa acgaagcaag aaaaggacat gcgtcaccct ctatatggac      2640
     accagcctgc tgaccgacgg cttcgttcga ggaagagctt cctgtcacgt acccgagcac      2700
     tggaagggtc ggccgcagag aaccgtattg caaggtggga aatggatttg agaagccccc      2760
     ataaagcagc aaaagaagaa ctggcacctg gtggagacct gccatacaca gtctggagaa      2820
     ccctgaaccg tatgagggta gaagtgccaa agtgcaagac aaacatgcag cgatggggct      2880
     tcctaaaaga taatgagaac actctgtgtc tttgtggtgc tgtacaggat cctcaacacc      2940
     tgcttatctg tccatattta gaaaagccct gtacaatgga agacttatgg gaggctaacg      3000
     acaaagccat atcggctgct aatttttgga agttagaagt ctagttccgg acacggaaag      3060
     taagtaagta                                                             3070
//
ID   Vingi-32_LMi repbase;    DNA;    INV; 3163 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-32_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3163
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 322-322 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(269..982,986..1156,1129..1950,1934..2497,
FT                 2501..3118)
FT                 /product="Vingi-32_LMi_1p"
FT                 /translation="MEKSMWSPFRKHAADEHQLKMRGLIPGYDIVGATYHH
FT                 AYGTATYVHSTTENASLLAASSKDDIHTVVIKVGDVTIINIYKPPLSPWPS
FT                 QMIQVQDHPAIYVGDFNSHHEEWKYSTTDTNGETLMNWAEEHNIHLVFDAK
FT                 DRGTFRSAAWKQEYNPDLCFVSSDQNNQPLLASRKVLQDFPHSQHRPICLE
FT                 VGMQIPMVTSYPRPRWNFRKADWKAFSCDLDKYVRWIPPTITRDLWVLLPQ
FT                 QKNSFLEAIGRNIFWLDDATEKLYQEFLASGEQEIGDELLHNLYNARRESG
FT                 LKLCSKRKWTETVTSMNFRESSRKAWSLLRKLGGATPICRKSSAVTPNKIA
FT                 AHIVDMSRSPRDRNHTRNIKRQLTSLKSTSPPDSVYIRPFSVQDIEAALKD
FT                 IKTGKAPGFDGIHPEFLINCGANTKLWLSRFLTYILRTGNLPRLFKMSKII
FT                 AILKPGKPNDAPESYRPIALLSVCYKLLERLLLNRIATKVFETIPIEQAGF
FT                 RPQRNCVDQVLSLTTFIEAGLQQRLKTSVAFIDLKAAYDTVWREGVISKLL
FT                 KVIPCRSLAHLINNMLSDRHFVVTDISCSHGDEISKTKKLNDGLPQGSVLA
FT                 PLLFSLYMSDIPSTRSRKFGYADDWALATKDLCFEKTEETLTEDLSVLGKY
FT                 FRKWRLQPSRSKTEVSCFHLNNRMASRDLKVYFDNTLLRHNRHPRYLGVTL
FT                 DRTLSFQEHLRKSAAKIQTHNNIIRKLCGSSWGASATTLRCSALSLVYSTA
FT                 EYCAPVMNSPHVKRTDVKLNDTMRMITGTIRSTPTQWLPVLSHIPPPHLRR
FT                 CIALMNEYNKIQNNQRLPIHEDIPHLHIDRLKSRRPPICTAENLLANNFNL
FT                 TERWFNEWRQFAPAESLDMPCITRKVPGFEQPRKVWSKLNRIRTNHGVCAD
FT                 LLYKWRKKSSSCCDCGAERQTVKHITQECPLRRFNGETSEFFLATPQAITY
FT                 VNNVDINL"
XX
SQ   Sequence 3163 BP; 1041 A; 672 C; 644 G; 805 T; 1 other;
     ggggagtgaa gttgctcacg tccataggtt ttaacctaaa attaccctac acgtgctccc        60
     tgggtggtgc taaacgagca acaacgatca ggctgccaga ctatcctagt gatctcctgg       120
     ctattttaca tgaaaatgaa aaatcattca aatggttctt ttcagaacca acaggcaaag       180
     actttcgggc ctatacttaa agttctccat ctaaatatag aaggcataag caaatccaaa       240
     tgccaatact tgtcaagaat cctgcgagat ggaaaaatcg atgtggtcgc cattcaggaa       300
     acatgccgcg gatgaacacc aattaaaaat gagagggcta ataccgggat atgatatcgt       360
     aggtgcaaca tatcaccatg catatggtac agctacatat gtccatagca ctactgaaaa       420
     tgcctcactg cttgcagcta gctcaaaaga tgacatacat accgttgtca tcaaagttgg       480
     agatgtcacc atcataaaca tctacaagcc tccactttca ccatggccct cccagatgat       540
     tcaggtacag gaccatccag ccatctatgt gggcgatttc aacagtcacc atgaagaatg       600
     gaaatatagc accactgata ctaatggaga aactctcatg aactgggctg aggaacataa       660
     tatccatctt gtatttgatg caaaagatag aggaacattt agatctgctg catggaaaca       720
     ggaatacaac ccagacctat gttttgtttc cagtgatcag aataatcaac ctctgctcgc       780
     atcacggaaa gtacttcaag atttcccaca tagtcaacat cgacctatat gtcttgaggt       840
     tggaatgcaa atacccatgg taacttctta tcctcgtcca cgatggaact tcaggaaagc       900
     agactggaaa gcgttctcgt gtgaccttga taaatatgtt agatggatac caccaacaat       960
     tacgagagat ttgtgggtgc tgtaattgcc acagcaaaaa aattcattcc tagaggctat      1020
     aggaaggaat atattctggc tggacgatgc aactgaaaag ctataccaag aattccttgc      1080
     cagcggtgaa caagaaatcg gggatgaact gcttcataat ctatataatg ctcgaagaga      1140
     aagtggactg aaactgtaac atctatgaat ttcagagaat cgagcagaaa ggcatggtca      1200
     ttgttacgga agcttggtgg ggccactccc atctgtcgta aaagttctgc agtcactcca      1260
     aataaaattg cagctcatat agttgatatg tctagatcac cgagagacag aaatcacaca      1320
     aggaacatca aaagacagtt aaccagtctc aagtccacaa gccctcctga ttcggtatat      1380
     attagaccat ttagtgtgca agatattgag gcagccttaa aagacataaa aactggtaaa      1440
     gcaccaggat ttgatgggat tcatcctgag tttctaatta attgtggagc aaatacgaaa      1500
     ttatggttat ctaggtttct aacctacatt ctgagaacag gtaatctacc tcgcttattt      1560
     aaaatgagta agataattgc aatcctaaag ccaggaaagc ctaatgatgc tccagagagc      1620
     tatagaccaa tagcattgct tagtgtatgc tacaaattac ttgaaaggct actcttgaac      1680
     agaattgcta caaaagtgtt tgaaacgatc cctattgaac aagcaggatt caggccacaa      1740
     agaaactgtg ttgaccaagt cttgtcacta actaccttca ttgaagctgg actccagcaa      1800
     agactaaaga cttcagtagc atttattgac ttaaaggctg cttacgacac agtatggaga      1860
     gaaggtgtaa tcagcaaact ccttaaagtg atcccttgta ggagtctggc ccatcttata      1920
     aataacatgc tgagtgacag acatttcgtg tagtcatggg gatgaaatca gtaaaacaaa      1980
     aaaactaaat gatggactcc cgcaagggtc agtgcttgcc ccactcttgt tcagtttata      2040
     tatgtcagat ataccctcta caagatctag gaaatttggg tatgcagatg attgggctct      2100
     tgccaccaaa gacctatgct tcgagaagac agaagaaacg ttgacagaag atctctctgt      2160
     tttaggaaaa tactttcgaa aatggagact ccagccaagt aggagtaaaa cagaagtttc      2220
     ttgttttcac ctgaacaacc gaatggcttc aagggacctc aaagtatact tcgataacac      2280
     tcttctccgc cataatagac accccagata tctaggtgtt acactcgaca gaacactgtc      2340
     attccaagaa catctgagaa agagtgctgc caagattcag acacataaca acataattcg      2400
     aaaactgtgt ggttcttctt ggggtgcaag tgcaactact ctacgctgct cagctctaag      2460
     tttagtttac tctactgcgg agtattgtgc ccccgtctga atgaacagtc ctcatgtgaa      2520
     gagaacagat gttaagttaa atgacacaat gagaatgatc acgggcacka tcagatcaac      2580
     tccaactcaa tggttgcccg tactaagcca cattcctcca ccccaccttc gtagatgcat      2640
     tgctctgatg aatgaataca ataagatcca gaataatcaa agattgccca ttcatgagga      2700
     tattccccac ctacatatag acagacttaa gtcaagacgt ccacccatct gtacggcgga      2760
     gaacctttta gccaacaatt tcaacctgac tgagagatgg tttaatgaat ggagacaatt      2820
     tgctccagca gaatctttag atatgccatg cattacacgg aaggtacctg gctttgaaca      2880
     acctcggaaa gtatggtcca agttaaaccg gatccggact aaccatggtg tgtgtgcaga      2940
     tctgctgtat aaatggagga aaaagtcatc atcctgctgc gactgtggtg ctgagaggca      3000
     aactgtgaag cacatcacac aagaatgccc actgagacgt ttcaatggag aaacaagtga      3060
     atttttcctg gcgacgccac aggcgattac ctatgtaaat aatgtagata taaatctgta      3120
     aattagtgta ctgatcatgt atatgccata cgataaataa ata                        3163
//
ID   Vingi-33_LMi repbase;    DNA;    INV; 1620 BP.
XX
AC   .
XX
DT   16-APR-2014 (Rel. 20.01, Created)
DT   16-APR-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-33_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1620
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 323-323 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(283..585,581..724,760..1344,1323..1550)
FT                 /product="Vingi-33_LMi_1p"
FT                 /translation="YGMDRWSHPEICQHDSMLEINKPVGKMLKVRYFKVNL
FT                 GSQSSKSKRIKNGLPQGSVLAPLLFNVYISDMTDTKSRTFCYADDMAIATE
FT                 SKWLEEGERTLNCTADLEVLNQYYKKWRLCPNPNKTETCAFHLNNTTSRQR
FT                 TKYYFLRKANXLDRSLTFKKHLELTSQKLKTRNNIIRRLAGTTWGADANTL
FT                 RAAAISHVYSVAEYCAPVWSRSAHVKKIDVQLNEAMRTLKSTPLEWLHVLS
FT                 NITPPEIRRQQATIQEWQKINHPDKARVLPVHQVLDDRCRYRLKSRAPIWE
FT                 DRTLAQGTTYDCHKSWKTKWNNSDINQHNIEDPSQQLPGMQLPRKIWCQLT
FT                 VNLVPANRVRTGHARTKSMLYKWGANDNPTCDCETDEQTLQHVVQDCPLRR
FT                 FCGNWRDFIEASPAAIEWLSRLDITF"
XX
SQ   Sequence 1620 BP; 542 A; 376 C; 328 G; 372 T; 2 other;
     agacatccga agaatttaga atgttcttac tccggccacc cttaaaccag gaaattcaag        60
     gaaccctaaa ctaccgccca atagccttac tgtgcattcg ctatacgtgc atgaaaggct       120
     gatctacaat agtatatacc caacgctgcc tctgaacaac ggattcagaa ctaatcgaag       180
     ttgctgcgaa caagwattag ccctcacatc atacatagaa tcgggattcc agaaaggatt       240
     gaaaacatca gtagtctttg tcgacctcag tgcagcttat gatacggtat ggatagatgg       300
     tctcatcctg aaatttgcca acatgattcc atgcttgaaa ttaacaaacc tgtgggaaaa       360
     atgctgaaag tccgatattt caaagtaaac ctggggtcac aaagtagcaa gtcaaaaaga       420
     ataaaaaacg gactccccca aggatccgta ctagctccac tgctttttaa tgtttacatc       480
     agtgacatga cagacactaa gtcacgtacg ttttgctacg ctgatgacat ggctatagct       540
     actgaaagca aatggctaga agaaggtgaa agaactctaa actgctgacc tagaagtact       600
     aaaccagtac tacaaaaaat ggagactgtg cccaaaccca aataaaacag agacctgcgc       660
     cttccattta aataacacga ctagcagaca gagaactaaa tattactttc tgcggaaagc       720
     gaattaaaca caacaaattt cccaaatatt taggcataaa mtcttgacag gtcacttacc       780
     ttcaagaaac acctggaact aactagccag aaattgaaaa cccgaaataa catcatccgg       840
     agattagcag gtaccacatg gggagcagat gcaaatacac tacgtgctgc agcaatatca       900
     cacgtctact ccgtggcgga gtactgtgcc cctgtgtgga gtaggagtgc ccatgtgaag       960
     aagattgacg tccagctcaa tgaagccatg aggacgttaa agtcgacacc tctagaatgg      1020
     cttcatgtcc tctcaaacat tactccgcct gaaatccgaa gacagcaggc aacgattcag      1080
     gaatggcaaa aaataaatca tccagataag gcaagagtac taccggtaca ccaagtacta      1140
     gatgaccgct gtcgatatcg cctcaaatca agagcgccaa tatgggaaga cagaacactt      1200
     gcccaaggaa ctacctatga ctgccacaaa tcctggaaaa ctaagtggaa caatagtgac      1260
     attaaccaac acaacataga ggaccccagc caacaactcc caggaatgca acttccccgt      1320
     aaaatctggt gccagctaac cgtgtgagaa ctggacatgc aagaaccaaa tccatgctgt      1380
     acaagtgggg tgccaatgac aacccaacgt gtgactgtga aactgacgaa caaacattac      1440
     aacatgtagt gcaagattgc ccgctgcgaa gattctgtgg taactggaga gactttatcg      1500
     aggccagccc tgctgctatt gagtggctgt ctcgtttgga cataactttt tagtgaattg      1560
     tggctgtcat tctatttcag ctttgctctc atttaataat cactggtgtt tgttttgttt      1620
//
ID   Vingi-35_LMi repbase;    DNA;    INV; 1489 BP.
XX
AC   .
XX
DT   22-MAY-2014 (Rel. 20.01, Created)
DT   22-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-35_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1489
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 324-324 (2015).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           582..1322
FT                 /product="Vingi-35_LMi_1p"
FT                 /translation="RRGIIFFISYAAPLGGSSADTLRTTALGLVYSTAEYC
FT                 APVWMNSAHTRKIDVQLNGTMRIVSGTIRSTPTSWLPILSHIPPADLRRSN
FT                 ALLREYRKITNNPRLPIHHDTPDLERNRLRSRHPTMKTAKELHNTDFNLIE
FT                 SWKERWRQACPEQCQALPCITERPPGYELPRKAWSSLNRIRTNHGRCADSL
FT                 YRWGKIPSPNCDCGADRQTIRHIIEDCEMRAYDGNVSDFLTAKDAAIDYIR
FT                 NLDVCI"
XX
SQ   Sequence 1489 BP; 422 A; 384 C; 333 G; 350 T; 0 other;
     aggatgtcgg atgtgccttt aatagccagg agatcgttct gattgtctgg ctgccagtta        60
     gcgctagttc atttagttca cgttttacaa cgctatccgg ggtgcaccac ggggaggcga       120
     actagcatta cacccttaca aacgcccgac ttatagatag cacgcttgcc gcagaacatt       180
     ccaggtgaca gtgggggacc aaatatgccc aaagaaccct aaacaacgga ttaccacagg       240
     gctccgtcct agccccattg ctattcagca tgtacatcgc tgacatgccc caaacaactc       300
     cagaaaattt gaatatgcag acgactgggc ttagcgtcaa cataagagct ttgagacaat       360
     ggagtgacct cgtcgtccaa cttggcgact ggcgcatatt tccggggccg agcctacaaa       420
     acgggacgtg cttccatatc tgtaataaat cagcaggcag acgacgacgt ctactttgag       480
     ggaactcgct ccggcataac ggtatccaaa gtacctcgga gtcacattag acagaaccct       540
     cacctataag cgacatctgg agaacactgc agccaaacta gcgacgagga ataatattct       600
     tcataagtta tgcggcacca cttggggggt cctcggccga cacgcttcgt acgacagcac       660
     ttgggttggt ctactcaaca gccgaatatt gcgctccggt atggatgaat agtgctcaca       720
     caaggaagat tgatgtgcag ttgaatggca caatgcgaat tgtcagcgga accattagat       780
     caaccccaac ttcctggctg cccatcctga gccacattcc acctgcggat ctgcgccgca       840
     gcaatgctct cctccgggaa tacaggaaga taactaacaa tcctcggctc cccatacacc       900
     atgacacgcc tgacctagaa agaaatagac tgcgatccag acacccaaca atgaaaacag       960
     ccaaggaatt acacaatacg gactttaacc taatagagtc ctggaaggaa agatggcggc      1020
     aggcatgtcc tgagcaatgt caagccctcc cctgcatcac cgagagaccg cctggatacg      1080
     agctgccccg taaagcctgg tcatccctga acagaattcg cacgaaccat ggaagatgcg      1140
     cagactctct ctacagatgg ggtaaaattc catctcccaa ctgcgactgc ggcgccgata      1200
     ggcaaaccat acgccacata atagaagact gcgagatgag agcgtacgat gggaacgtct      1260
     ccgatttcct gactgcaaaa gacgccgcaa tagactacat acgcaacctt gatgtttgta      1320
     tctgactgtg ttaatttatt ctttgtgtgc tgtatgcatc ttatatacct tattttatgt      1380
     ctcttttgta ttcttgtatg ttttacacat ttttgtattt tttgtatgta tagttgtata      1440
     agacctgcta aatgatgtgc actgccatac gataaataaa taaataata                  1489
//
ID   Vingi-36_LMi repbase;    DNA;    INV; 1692 BP.
XX
AC   .
XX
DT   27-MAY-2014 (Rel. 20.01, Created)
DT   27-MAY-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-36_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1692
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 325-325 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 1692 BP; 542 A; 396 C; 374 G; 377 T; 3 other;
     catggaagag taagctgacg cagggaattt aggccaatct cattactgca acaacctaca        60
     aactgcttaa aggatactgt agaaagactt aaatcggtgc tggagaaact caccacacac       120
     attgaacgag gctttgagga aagaaagaaa acaggatagt cccattgacc tgacatcagc       180
     gtacgacact gtatggctaa atggtctcat gttaaaactg gcaaagatag tcaaatgcaa       240
     aacaacgttg aagctcatga acaacatgct gagcgaaagg aagttcaggg tcatattaaa       300
     tggcgaaacc agcaggtgcc acaccctaag aaatggtctc ccacaaggat cagtcttagc       360
     tccctggctc ttcaacatct atatagcaga tttgcctgat ctgcactcag taaatttgcc       420
     tacgcagatg atttagctat tgcagcgcaa agtaactcat ttgaaaacct ggaatcaaaa       480
     ctaaatgaag atctasctac actgaaacaa tactatgaca cctggcawct gaaaatcaac       540
     gtgacaaaaa caataagcac agtcatgcat ctgaacaaca aggagggggg ccccgaccgc       600
     agtggccggc agccgtgcgc gccccctcgg tcaccacggc cggcagaagg gaactccgcc       660
     tggttataga tgagaaagct gtcagccacg agaattttcc aaaatatctc ggaattcagt       720
     tagatcgcag catgactttc agacaacacc taactgaaac tgcccaaaag gacgagaaat       780
     aacctgctca acagactggc aggcaccact tggggttgtg atgctgccac tctgcgaact       840
     gctgcactcg cactggtgta tagcgctgca gaatactgtg ccccagtctg gggcagaagc       900
     ccgcacgcca aaaaaattka tgttcaacta aatgccacac taagaaccgt caccggcaca       960
     ctcaggccaa cccccgttga gtggcttcca gtgctggcaa acatcgctcc cgcttccata      1020
     cgcagagaga aagcaacccg ggatatagaa gaaaaaatta aagcaaaccc aaggctaccc      1080
     atacatgccg acatgggagg acccatgaga ctcaagtcca ggaaacctct cgtctggagc      1140
     agaacactgg gcacagaggg tgtcgatgct gaatggagga ctgcatggca gggtctgaga      1200
     agaggcgtcg tgaagaacca tcacctaatc cacgacccaa ccaaaagggt tgaaggcttc      1260
     gacctcaaca ggaaacactg gtcggcacta aacaggtttc gcactggagt tggacgatgc      1320
     aggcagcaaa caaccaaatg gggctataca gacaattcgt gctgtgactg tggcgaggta      1380
     caaacaatgg accatcttct tgtttgtaac attcatggtt tcagagacgg ttcactaatg      1440
     tcgctccaca agttaacgga caatgccagg aaatggctcc ataaccttaa tgttactgtg      1500
     taattaatgt ttttcagttt ataagatttt tgttccattt aatgtaataa tatagtttcc      1560
     ctgacataat tgtaatgtaa taactgatat aatttgtttc catattgtaa gttccaaacg      1620
     tcatcttgat ttatattaat cttatctgtt ctttgtacaa tgtatctggc agatcgaacg      1680
     agaaataaat aa                                                          1692
//
ID   Vingi-37_LMi repbase;    DNA;    INV; 3119 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-37_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3119
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 326-326 (2015).
XX
DR   [1] (Consensus)
XX
CC   >92% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(95..1621,1467..1961,1841..3043)
FT                 /product="Vingi-37_LMi_1p"
FT                 /translation="MRMSVNKRSFSEPALKMTSVNIEGLSANKELLLSDIC
FT                 SKCKCDVLILQETHRGPTSHRPNIKGMILTLERPHEQYGSAIFTKPGLMVR
FT                 SAAMTHVDDIEILTVELKACTVTSLYKPPGADFTFREPSNFQTQPLKFITG
FT                 DFNSHSTAWGYQETDSNGEKVERWAESSGLKLVHDPKLPASFNSGRWRRGY
FT                 NPDNIFVTEQIAQQSFKSVEDALPRTQHRPISLTVKAVVCPVTVPFKRRFN
FT                 FKKARWRLFTEELDSKIDEILPAACSYDKFIQLIRRVSRKYIPRGCRNEYI
FT                 AGLDDNIEILLKKYEELYNTDPFSEDTLETGEDLLRALTTTRREKWCDLVT
FT                 SLDFKQNSRQAWSLLRNLSNDPTSSKTLHTSVTPNQIAHQLLLNGKTTHRS
FT                 PRPSIVRDMENEHHSLEAPFTLEELQAAIDKMKNNKAAGEDDLRVEQIKHF
FT                 GPKTLRWLTHLMKQLRQHHADSQSVEKSKSGSPIKTRKGANRCQKLSPSIL
FT                 AVPSVQGPRENGANNCVNTMQIPRVWRKARVVALLKPGKEPTDVKNFRPVS
FT                 LLCHLFKALERMVLNRISNHVDEVLSPEQAGFRPGRSCTGQILNLTQHIED
FT                 GYERKQVTGVAFVDLSAAYDTINHSRLVHKVYQATKDFGLSRFVQCILQNR
FT                 RFYVTLQGKSSRWRIQKMVLLRAVYGLWTFKICAVHTTEQAFLCHTARKKQ
FT                 QMENPKNGLAQGSVLAPVLFNIYTNDQPMHPDVRQFIYADDTAVAAQGSTF
FT                 EEVEEKLTRALELLGNYYHQNHLKPNPAKTQVCSFHLRNKEAKTKLHVSWK
FT                 GQELEHCYAPKYLGVKLDRTLSFKQHCLDTKKKVSTRNSIIRKLTNTNWGA
FT                 DPQVLRTTAMALSLSAAEYAAPVWKNSAHVKHIDVAVNESARIISGCLRPT
FT                 PTEKIYPLIGIAPPSIRRQVAAEVERKKQLTDNRHPLHGHQQQPRRLRSRR
FT                 SFLWTSEPIDVTVEERRLQLWKEATPNPILALKEQLAAGGNKSFTTWKALN
FT                 RLRTGVSNCKFNLSRWGYLDGEPLCDCGNVQTDDHLLTCPNLSTCCTPLDL
FT                 QLANDKAICVADYWARNI"
XX
SQ   Sequence 3119 BP; 1010 A; 738 C; 714 G; 654 T; 3 other;
     ggggacacag aaggagcctc ctagaagatc gaaagatcgg gcgtccctgg aaacggcaca        60
     cagccggmta atccttctaa caccagaaca ccagatgaga atgagtgtga ataaaaggtc       120
     cttttcagaa ccagccttaa aaatgacttc agttaacatt gaaggtttat ctgcaaataa       180
     agaactttta ctatctgaca tatgcagcaa atgcaaatgt gatgttttaa tcttacaaga       240
     aacccacaga ggacccacca gccacaggcc aaacataaaa ggtatgatat tgacattaga       300
     aagaccccac gaacaatacg ggagcgcaat attcacaaag ccaggcctca tggtccgatc       360
     agcagcaatg acgcatgtgg atgacataga aattttaaca gttgaattaa aggcatgcac       420
     agtgacctcc ctctacaagc cacctggagc agatttcacg ttcagagaac caagtaattt       480
     ccaaacgcag ccattgaagt ttataactgg agatttcaat agtcacagca cggcatgggg       540
     ttaccaagag acagattcca atggggaaaa agtcgaaaga tgggcggaga gttctggact       600
     taagcttgta cacgatccca aattaccagc ctctttcaac agtggacgat ggagacgcgg       660
     atacaaccca gacaacatat ttgtaacaga acagatagcc cagcaatcgt tcaagtcggt       720
     agaagacgcg ctaccaagga ctcagcatag acccatctca ctgactgtta aagctgtagt       780
     atgcccagtt accgtcccat ttaaaaggcg gttcaatttc aagaaggcac gttggagact       840
     cttcacagaa gaactggata gtaagattga cgagatactg ccagccgctt gctcctacga       900
     caaatttata cagcttatca gacgtgtatc acggaaatac attcctaggg gctgccggaa       960
     tgaatatata gctggcctcg atgacaacat agaaatattg ctaaaaaagt atgaggagct      1020
     gtacaatacc gacccattct ctgaagacac cttagagacg ggagaggacc tgctccgagc      1080
     cttaacgact acwagaagag agaagtggtg tgacttagtc acgtcacttg atttcaaaca      1140
     gaacagcaga caagcctgga gccttctcag gaacctcagc aacgacccaa ctagctctaa      1200
     gacacttcat actagtgtta caccaaacca aattgcccat cagctcctac tcaacgggaa      1260
     aaccacccac agatcacccc gaccttctat agtaagagac atggaaaatg aacaccactc      1320
     acttgaggca cccttcacgc ttgaggaact gcaggcggct atagacaaaa tgaaaaacaa      1380
     caaggcagcc ggcgaagatg atttaagggt cgaacaaatt aaacactttg gcccaaaaac      1440
     tctcagatgg ctaacacacc tgatgaaaca actgcgtcaa caccatgcag attcccagag      1500
     tgtggagaaa agcaagagtg gtagccctat taaaaccagg aaaggagcca acagatgtca      1560
     aaaactttcg cccagtatcc ttgctgtgcc atctgttcaa ggccctcgag agaatggtgc      1620
     ttaatagaat atccaaccat gtagacgaag tcctaagtcc tgaacaagct ggatttaggc      1680
     caggacgttc atgtactggg caaatactga atttaaccca gcatattgaa gatgggtacg      1740
     aaagaaagca ggtgactggc gtggctttcg ttgatcttag cgcagcctat gataccatta      1800
     atcacagtag actggtacat aaggtttatc aggcgactaa ggactttgga ctttcaagat      1860
     ttgtgcagtg catactacag aacaggcgtt tttatgtcac actgcaagga aaaagcagca      1920
     gatggagaat ccaaaaaatg gtcttgctca gggcagtgta ttagctccag tgttgttcaa      1980
     catatacacw aatgaccagc caatgcaccc cgatgtcagg cagtttatat atgctgacga      2040
     cacggctgtg gccgcccaag gaagcacctt cgaggaagtg gaggagaagt taacgagagc      2100
     tctggaatta cttggcaatt actatcacca gaaccatttg aaacccaacc cagctaagac      2160
     gcaagtctgc agtttccatc tgaggaataa ggaagctaag acaaaactcc atgtaagctg      2220
     gaaaggccaa gagctggagc actgctacgc tcccaaatac ctaggggtga agttggatag      2280
     aactctgtca ttcaaacaac actgtttaga cactaagaaa aaggtcagca ctaggaacag      2340
     catcattcgt aaactgacga acacaaactg gggtgctgac ccacaagtgc ttcgaacaac      2400
     agccatggca cttagtctgt cggcagctga atatgccgcg cctgtgtgga agaattcggc      2460
     ccacgtgaaa catatcgacg tggccgtaaa tgagtcagcc cgcatcatat cggggtgctt      2520
     gagacccacg ccgacagaga agatctaccc tctcataggg atagctcccc ctagcatacg      2580
     gcggcaagta gctgccgagg tggagaggaa gaaacaattg acagacaatc gccaccccct      2640
     acatgggcac caacaacagc ctaggcggct tcgctcaaga aggagcttcc tttggacatc      2700
     agagccaatt gatgtcactg tcgaagagag gaggcttcag ctatggaagg aggcaacacc      2760
     taaccctatc ttggccctga aagaacaact tgcagctgga ggtaacaaat cctttacaac      2820
     ctggaaggct ctcaacaggc tgaggactgg ggtctcaaat tgcaagttca acctttccag      2880
     atggggctac ctcgacgggg aacctctgtg cgactgtggg aatgtccaga cggacgacca      2940
     cttactgacg tgcccaaacc tcagcacatg ctgtaccccc ctggatttac agctagctaa      3000
     tgacaaggcc atctgtgtgg ctgattactg ggcaagaaat atctaaattt taaaatttat      3060
     tacatggact caaactagat gtaaaggatg gtgttctgga cacgaaaaat aaaataaat       3119
//
ID   Vingi-38_LMi repbase;    DNA;    INV; 3162 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-38_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3162
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 327-327 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           65..3028
FT                 /product="Vingi-38_LMi_1p"
FT                 /translation="MSVRKMRDHKRLFSEPTLTIISFNTEGLSNAKQELIS
FT                 NMCKDYRCDVLCLQETHRGPDSVRPRIPGMQLIKEIPHNQYGSAIFVKNDI
FT                 KVTEGRTSYQNGVEIVSVSLGNINIHSVYKPPSIPYQFSAPLGKSKEIPDI
FT                 IMGDFNSHNVAWGYTQTNRDGELVEQWAENNQLHLIHDPKQPPSFNSGRWK
FT                 RGYNPDLCFTSNSLANISQKLVLNPIPKSQHRPILCKMNPVIQPTEFPLRN
FT                 RFNFQKANWEAFSKGVDNKLSSLLPLSENYSGFVNALKYCARQSIPRGCRK
FT                 SYVPGYNKDTKEKYEMYCDLYDANPFAPETIEAGEEVITTMIENRRQKWQH
FT                 TVENINMTHSSRKAWRLLKKLDGASTRTPDFVAVTANQIASQLLKNGKIEH
FT                 RLKRGHSNKLNTSQEENNKSQDHPFTLSELDEAMKSLKIGKAAGIDDIKNE
FT                 QLIHLGVHAKLWLLEFMNSCWTTGQIPKIWRQAKVIAILKPGKDPEDPKSY
FT                 RPISLLCTTYKLFERLILNRFSDLIEGTLIKEQAGFRPGKSCTSQALNLTQ
FT                 FIEDGFEERLATGVVFIDLTAAYDTINLRNLITKVQRTTKSPRLTAVLKSV
FT                 LFNRRYFVEFQGNKSRWRLQKNGLPQGSVLAPVLFNIYTNDQPISPRSRSF
FT                 IYADDRAIAVQASNYEDIEETLNENLENLTNYYNKNQLKPNPSKTQTCLFH
FT                 LNNREAKRELNVWWNGTRLEHCPSPVYLGVTLDRTLSFKRHIEKSRAKVQT
FT                 RNSLLGKLTTSKWGANAKVLRTTAMALCYSAAEFASPVWERSCHANKLDPV
FT                 LNQTCRLITGCLKPTRVEHLYSLSGIAPPKVRRSVQSSIERSKQLXDQRHP
FT                 LHGYQTVPKRLKSRSSFLHSTEPLADPPRTTRIKLWREQQGHANYAEEALP
FT                 PGAELDWQRWKTLNRLRSGMGRCNKNLHKWGIGESVLCSCGNIQTMDHLLE
FT                 CPEVNHPRACTAQDLMTCSSTAMAYIDFWKNEI"
XX
SQ   Sequence 3162 BP; 1078 A; 690 C; 667 G; 724 T; 3 other;
     cactcgggcc cccgggcaac ggcagcctgc cggctaatct ttctacccag cgactacaaa        60
     cctcatgagt gtgcggaaaa tgagagatca caaaaggctc ttttcagaac caacactgac       120
     aattatctca ttcaatacag aaggtttgtc caatgcaaaa caagagctca tttcaaatat       180
     gtgcaaggat tataggtgcg atgttctgtg ccttcaggaa acgcacagag gcccggactc       240
     cgtaaggcca agaatacctg gtatgcagct aattaaagag attcctcata accaatatgg       300
     aagtgcaatt ttcgtgaaga atgacatcaa agtaacagaa ggtagaacta gttatcagaa       360
     tggtgtggaa attgtttccg taagtctggg taacataaac atccactctg tatataagcc       420
     ccccagcata ccatatcagt tcagtgcacc cctggggaag agcaaggaga taccagacat       480
     aataatggga gacttcaaca gtcacaatgt ggcctgggga tatacgcaaa ctaacagaga       540
     tggagaacta gtggaacagt gggctgaaaa caaccagctt catctgatac acgatccaaa       600
     acagcctcca tcgtttaaca gtggcagatg gaaaagaggc tacaatccag atctatgttt       660
     cactagcaac agccttgcaa acataagcca aaagctcgtc ctgaatccca tcccaaagtc       720
     ccagcaccga ccaatactct gcaaaatgaa ccccgtgatt caaccaacag aatttcctct       780
     ccgaaacaga tttaatttcc aaaaagctaa ctgggaagcg ttctcgaaag gagttgacaa       840
     caaactttca tcactgctac ctctttcaga aaactacagt ggttttgtta atgctttaaa       900
     atactgtgca cggcagagta taccgagagg atgcagaaaa tcatacgtcc caggctacaa       960
     caaagataca aaagagaagt acgaaatgta ttgtgatctc tatgatgcca acccgttcgc      1020
     cccagaaaca attgaggccg gtgaagaagt cataacaaca atgattgaaa atagaagaca      1080
     gaagtggcaa cacactgtag aaaacattaa catgacccac agtagcagga aagcatggag      1140
     actactcaaa aagctagatg gtgcatctac acgtacacca gactttgtag ccgttacagc      1200
     aaaccaaata gcctcccagt tgctgaaaaa tggtaaaata gaacacagat taaagagggg      1260
     gcattcaaac aaactaaata cttcccaaga agaaaataat aaatcacaag atcacccatt      1320
     tacattatca gaactggacg aagcaatgaa aagtctgaag atcgggaagg ctgcaggtat      1380
     agacgatatt aaaaatgaac agctcataca tcttggtgtt cacgctaaat tatggttgct      1440
     ggagtttatg aacagctgtt ggacaactgg tcaaatccct aagatctgga ggcaggcaaa      1500
     agtaattgca attcttaagc ctggtaagga cccagaagat cctaagagct atcggccgat      1560
     ctctctgttg tgtacaacct ataagctgtt tgaaagactt atactaaaca gattcagtga      1620
     cctgattgag ggcaccctaa taaaagagca agcaggattt cgacctggca aatcttgtac      1680
     cagccaagct ctcaacctaa ctcagttcat tgaagatggg tttgaggaac gactagcaac      1740
     aggagttgtg tttatagatt tgacggcagc atatgatacc atcaacctca gaaaccttat      1800
     tacgaaggtg caaagaacaa caaaaagccc tcgacttact gcagtactca aatcagttct      1860
     gtttaacaga agatattttg ttgaattcca gggtaacaag agcagatggc ggctacagaa      1920
     aaatgggctt ccccagggca gtgtccttgc cccagttcta ttcaatatct acacgaatga      1980
     ccagcctatt agtccgcggt caagatcttt catatatgct gacgataggg caatagctgt      2040
     tcaggcatca aactacgagg atattgagga aacactaaat gaaaacctag aaaatctaac      2100
     aaactattac aataaaaatc agctgaagcc caatccaagt aagacccaga cttgcctatt      2160
     ccatcttaac aatagagagg caaagaggga actgaatgtt tggtggaatg gtacaagatt      2220
     agaacactgc ccttccccag tgtacttggg agttaccctt gataggacac tatcatttaa      2280
     gcgmcacatt gagaagagca gggcaaaagt ccaaacacgg aatagcttac ttggcaaact      2340
     aacaacgtca aaatggggag ctaatgcaaa agttttacgt acgacagcaa tggcgctctg      2400
     ttactctgct gctgagtttg caagtcctgt gtgggaacgg tcatgtcatg caaacaaact      2460
     ggaccctgtc ctgaatcaga cctgtaggct tatcactggc tgtctcaaac ctacaagagt      2520
     tgaacaccta tactcattat caggaatcgc tccaccaaag gtccgacgat cggtacagag      2580
     cagcatcgaa cgatcaaaac agcttsaaga ccaacgtcac ccattacatg ggtaccaaac      2640
     tgtaccaaaa cgccttaagt caagaagcag ttttctacat tcaacggaac cactcgcaga      2700
     cccaccaaga actaccagaa taaaattgtg gcgggagcaa caaggacatg ccaactatgc      2760
     tgaggaggcg ctgccaccag gcgcagaact tgactggcag agatggaaga ctctgaacag      2820
     actgcggtct ggaatgggta gatgcaacaa gaatttgcac aagtggggaa tcggtgaaag      2880
     tgttttgtgt tcgtgcggaa acatacagac catggaccac ctgctggaat gtccggaagt      2940
     aaatcaccca agagcgtgca cagcccaaga cctgatgacc tgcagcagta cagcaatggc      3000
     atatatagac ttctggaaga atgagatatg aagttgctca tactattctt gtacataatt      3060
     ttcatgtatt atatgttatt gtaaaaatkt gtagacatta ttattttaca atttgtgaat      3120
     ttattatata ctgtttgtag ctcgcatacg aaatatatat at                         3162
//
ID   Vingi-39_LMi repbase;    DNA;    INV; 2311 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-39_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2311
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 328-328 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(120..506,676..1068,1106..2152)
FT                 /product="Vingi-39_LMi_1p"
FT                 /translation="TIQGLRTNYIQSYSETTILLKEYEDSIKIPSVTKLST
FT                 VGSILFPLSPNQATSGLNNGRNRYGKKQCAWELLDSNDTTKTSVHCNISAN
FT                 KIASQLWRAVNKLEEGQNEKKNAHENSILSNHFAIEDLIECAWQERNDPKN
FT                 YRPISLLSHLYKILERMILDRLSEVVDPLLISEQAGFRPGRSCTSQVLHLT
FT                 QYIEDGYENNKVTGVVFIDLTSAYDTVNYRILLRKVHDITKDYKLTQMIEC
FT                 FLQNRFFVEFQGQRSRWRTHLHDQPRPHETKICRLACKQKTFELAEEKLSH
FT                 ALQILSGYYQENQLKPNPSKTQVCAFHLKNQQASRKLQVIWEGKQLEHCFT
FT                 PKYLGVTLDRTLTYRTHCLNTKRKVSARNNILRKLSGTTWGTHPHTLRTSA
FT                 IALCYSAAEYACPVWCRSSHAKEVDVALNETCRLITGCLRSTPLDKVYCLA
FT                 GIPPPDIRRECASRVEKTKALNLATHTLYGYQPAHQRLRSRKSFLHSTESL
FT                 SEPPSNFRVNSWRSRSSHLAGWMVPSESLPPGHEESWSTWKTLNRLRSGVG
FT                 RTKINMRRWGFPCDSTVCECGEEQTMSHLLECKRCPTRCSPQNVIDATKEA
FT                 CEVAAYWSRHI"
XX
SQ   Sequence 2311 BP; 779 A; 512 C; 464 G; 556 T; 0 other;
     atgcagttag atgaaggtac tatttcaagt aaggcaaact ggcaagaatt cgctcaatgc        60
     tcggtgaaac gattaaaaaa tgacccacgc cagagcaatg agttaacctc catttgtaaa       120
     ctatccaggg gctcagaacc aactacattc agtcttactc tgagacaacc attctgctga       180
     aagaatatga agattcaata aagatccctt cagtgacgaa actgtccaca gtgggcagca       240
     ttttatttcc actatctccg aatcaagcaa ctagtggatt aaataatgga agaaatagat       300
     atgggaagaa acagtgtgca tgggaactac tagactccaa tgacacaact aagacctcag       360
     tacattgtaa catctctgca aataaaattg caagccagct gtggagagcg gtaaacaagc       420
     tggaagaggg tcaaaacgaa aagaagaacg ctcacgaaaa tagcattctt tccaaccatt       480
     ttgctatcga agatctaata gagtgctgaa taaatgcaaa aatggcaagg cggcaggtct       540
     tgatgacata tgcattgaac aactcaaaag atttggacct gttacgtaag aatggctctt       600
     agatttattc aataactgca tcacctactg caaaatccct aaactgtgga gaaaagcagt       660
     tattgcaata cttaagcctg gcaagaacgc aatgacccaa agaattatcg accaatctct       720
     ttgttgagtc atttgtataa aatcttagaa agaatgattt tggatagact atctgaggtg       780
     gtagacccat tgctcatatc agaacaagca ggctttagac cagggagaag ttgtacttcc       840
     caagtactgc acctgacaca atacatagaa gacggctacg aaaacaataa agtcactggg       900
     gtagttttca ttgacttaac atcagcctac gatacagtta actaccgaat actgcttcgt       960
     aaagtgcatg atataactaa ggactataaa ctcacacaaa tgattgagtg ctttcttcaa      1020
     aataggtttt ttgttgaatt ccaaggtcag aggagcagat ggaggaccta agaacggcct      1080
     cccgcaaggg gccccattct tttaacattt acacgaccaa cctcgcccac acgagacaaa      1140
     gatatgtcgc ttagcgtgca agcaaaaaac atttgaactt gcagaagaga agctctccca      1200
     tgccttacaa attttaagtg gatactatca agagaaccaa ctgaaaccaa atccatcaaa      1260
     aacacaagtc tgtgccttcc acctcaaaaa ccaacaggca tcaagaaaac tgcaagtgat      1320
     ctgggaaggt aaacaattag agcactgttt caccccaaaa tacttaggag taactcttga      1380
     ccgaacactt acctatagaa cacactgctt gaacacaaaa aggaaggtat ctgcaagaaa      1440
     caacattctc cggaaattat caggtacaac ctggggaaca catccccata ccttaagaac      1500
     atcagctata gccctttgct attcagccgc agaatatgct tgccctgtct ggtgcagatc      1560
     tagtcacgcc aaagaagtgg atgtcgcctt gaatgagacc tgcagactca taacaggatg      1620
     tctgagatcc acaccacttg ataaagttta ctgtttagca ggtatcccac ctccagatat      1680
     ccgtcgtgag tgcgcatcca gagtggagaa aactaaagca ctaaaccttg cgacccatac      1740
     tctatatgga taccaaccag cacaccagag gctcaggtca aggaaaagct ttcttcattc      1800
     aacagaaagc ctcagtgaac caccatcaaa cttcagagtg aactcatggc gctctagatc      1860
     tagccacctc gcaggatgga tggtgccctc agaaagcctc cccccaggtc acgaggaaag      1920
     ctggtcaacc tggaagacgc ttaacagact gcgctcagga gttggaagaa cgaagatcaa      1980
     catgagaaga tggggatttc cctgcgactc gaccgtatgt gaatgtggcg aagaacagac      2040
     aatgagccat cttctcgaat gcaaacggtg tccaactaga tgctctcccc aaaatgtgat      2100
     tgacgctacc aaggaggcat gtgaagtggc cgcatactgg tcgcggcaca tttaattaca      2160
     tttgtgttag ctataattat gcccagaaat gataatgctt acagtaccaa agtttggatt      2220
     tttactttat tttgtacttt tactgccttg ttttcttgtt gtatataact ccgaaagtat      2280
     gtatgtttct gacacgatta aataaataaa a                                     2311
//
ID   Vingi-3_LMi repbase;    DNA;    INV; 3218 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-3_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3218
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3497-3497 (2014).
XX
DR   [1] (Consensus)
XX
CC   >97% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(135..1844,1831..2700,2704..3066)
FT                 /product="Vingi-3_LMi_1p"
FT                 /translation="MMKGPFSEPCLTAISLNIEGLSTEKEQLISNTCKLHS
FT                 CDVLCLQETHRGPSQRRPRIPGMILVKECPHDQYGSALFIRPGIKVSNIRF
FT                 NTVNNTEIISVIIGSITVSSIYKPPGERFAFSQHVCHPQLVMGDFNCHSKV
FT                 WGYQDTNEDGELLESWAEEQELNLIHDQKQPASFNSARWKRGYNPDLIFVS
FT                 KTLSGSCNKFVLNPIPKTQHRPIMVKFRPVIVPQEVSFKRRFNFKRANWKK
FT                 FADILDKEIVYLPPNAENYEKFVEAVKRSARLSIPRGCRTLYIPGISNKMK
FT                 QLYNEYIEQYNHDPFSVETIKLGEQLTETISKDRQESWKHMLESLDMKHSS
FT                 RRAWNLLKRLSXDPAAPKDQVSVTANQIAHQLLLNGKPTRNSKIVTSYKRP
FT                 QVDEIPPVPYFTSIELETAISSLKSRKAPGPDDVVNEFIQNIGPIAKEWLL
FT                 QLYNFCWANKSVPKLWLKAKVVAVPKPGKSRDDAKNYRPISLLCCPFKLYE
FT                 RLILNKIGPQLESQIIPQQAGFRPGKSCTGQVLCLTQYIEDGFQKGEKTGV
FT                 VFVDLSAAYXTINHKILLENFSKKIFQNEGNYHLTEVVRSLISNRRYYVEF
FT                 QEQRSRWRNQKNGLPQGSVLSPLLFNLYTNDQPAGPDARSFIYADDVAIAC
FT                 QSRSISHIERNLSDALEVLTEYYNRNQLRPNPAKTQTCLFHLNNQEAKREL
FT                 QLEWNSVKLKHCPNPVYLGVTLDRTLSYKSHVEKTRAKIYTRNGIIRKLTN
FT                 SHWGANPEILRSSSLALCFAPAEYACPVWRRSTHAHKLDTALNDSCRLITG
FT                 CLKPTNRDLLYMCSGIAPPQIRRQTWRWLKEADSARIEDIPCSDISQWCKI
FT                 KIEERFHFEHPLNESQSTTRESMWTQKLEKKKKKNSLQCWNIKEKLPAGSQ
FT                 LEWRVWKSLNRLRCRMGRSKDNLFKWGYAEDELCQCGEKQTMTHLLSCPSL
FT                 PAPCTFQDLWLANDAAVKCAEHWREI"
XX
SQ   Sequence 3218 BP; 1094 A; 707 C; 669 G; 746 T; 2 other;
     ggggacaagg aaggagcctc ccagaagatt gtaccgtaca tgtacagtcg ggcgtcccct        60
     gggcaacggt aaacaccggc aaatccttcc acacactgag ctacgtctaa accgacattg       120
     tattcagaat ctgaatgatg aaagggccct tttcagagcc atgtctaaca gccatatctc       180
     tcaacattga gggcttatca actgaaaaag aacaacttat atccaacaca tgtaaacttc       240
     attcgtgcga cgtcctgtgc ctccaggaga cacacagagg gccatcacaa cgccgaccac       300
     gtattcctgg gatgatcctg gtgaaggaat gccctcacga ccaatatggg agtgctctat       360
     ttattcggcc tggaatcaaa gtgtccaaca tacggtttaa taccgttaac aacacggaaa       420
     tcatatctgt gattatcggg agcatcacgg tatcatcaat atataaacca ccaggagaaa       480
     ggtttgcttt cagtcaacat gtctgccacc cacaactagt aatgggagac tttaactgtc       540
     acagtaaagt gtggggctac caagacacaa atgaggacgg agaattattg gaaagctggg       600
     cagaagaaca agagctgaat ctcatccatg atcagaaaca gcctgcatca ttcaacagcg       660
     caagatggaa gagagggtat aacccagatc tcatatttgt ctccaaaacc ttgtctgggt       720
     catgcaataa attcgttctc aatcctattc caaagaccca acacagacca atcatggtaa       780
     agtttagacc agtaatagtt ccccaagaag tgtcctttaa aaggcgtttt aactttaaaa       840
     gggctaactg gaaaaaattt gctgacatct tagataagga aatcgtatat ttaccaccaa       900
     acgctgaaaa ctacgaaaag ttcgtcgaag ctgttaaaag atcagcaaga ctcagcatac       960
     ccagaggctg cagaacactc tacattcctg gaatttccaa caagatgaaa caattatata      1020
     atgaatacat tgagcagtac aaccacgacc ctttcagtgt agaaactata aaacttgggg      1080
     aacagctgac tgaaactata agtaaagacc gacaagagtc ctggaaacat atgttggaga      1140
     gtcttgatat gaaacatagt agcagaagag cttggaatct cttaaaacga ttatctagmg      1200
     acccagcagc ccctaaggat caagtttccg taaccgccaa tcagattgca catcagctcc      1260
     ttttgaatgg caaaccaacc agaaacagca agattgtcac ttcgtataag aggccacaag      1320
     tggatgaaat accaccagtg ccatatttca cttcaataga attggaaaca gctatcagtt      1380
     ccttgaaatc caggaaggcc ccaggtcctg atgatgtcgt taatgaattt atacagaaca      1440
     tagggcccat agctaaggaa tggctcttac aactctataa cttctgctgg gctaacaagt      1500
     cggtcccaaa gctatggcta aaggccaagg tagtagcagt cccaaagcca gggaaatcaa      1560
     gagacgatgc caagaactac cgtccaatat cgctgctgtg ctgccctttc aaactatacg      1620
     aacgtcttat cttgaataaa ataggaccac aattagaaag ccaaatcatt ccacaacagg      1680
     caggatttag acccggaaag tcttgtactg gtcaggtcct ctgcctaaca caatacatag      1740
     aggacgggtt tcagaagggt gaaaaaactg gtgtggtgtt tgtcgatcta tcagcagcat      1800
     atgmtacgat aaaccataaa atcctactag aaaatttttc aaaatgaagg aaattaccat      1860
     cttactgaag ttgtgagatc tctgatctcc aacagaagat actatgtgga atttcaagag      1920
     caaagaagcc gctggaggaa ccagaagaat gggctcccac aaggtagtgt tttgtcccct      1980
     ctacttttca acctgtatac aaatgaccaa ccagctggac cagatgcaag aagttttatc      2040
     tatgctgatg acgtagccat tgcttgccaa tcgagatcaa tcagtcacat cgagagaaac      2100
     ctatcagatg ccttagaagt tcttactgaa tattacaaca ggaaccagct tcgaccaaat      2160
     ccagcaaaga cacagacttg tttattccac ctgaacaacc aggaagcaaa aagggaatta      2220
     caattggaat ggaactcagt taaacttaaa cattgcccaa acccagttta tctcggagtc      2280
     acattagatc gaacactgtc ctacaagagt catgtagaaa aaactagagc gaaaatctac      2340
     acacggaacg gtataatccg caaactcacc aactcacact ggggagcaaa tcctgaaatt      2400
     ctgcgttcat catccctggc tttgtgtttt gctccagctg aatatgcttg ccccgtatgg      2460
     agaagatcga cgcacgccca caagctagat acagcactga acgattcatg tcgattaatt      2520
     acgggatgcc tgaagcctac aaaccgtgat ctcctttata tgtgttctgg aatagctccc      2580
     ccacagatca gacggcaaac ttggcgatgg ctgaaagaag cagacagtgc gaggatagaa      2640
     gacatcccct gttcggacat cagccagtgg tgcaagatta aaatcgagga aagatttcat      2700
     taatttgaac atccactaaa tgaaagtcaa tctacaacca gggaatcaat gtggacacag      2760
     aaattggaaa aaaaaaaaaa aaaaaacagc ttgcaatgtt ggaacattaa agaaaaactt      2820
     ccggctggat ctcaactgga atggagagtc tggaagagcc taaatagact taggtgtcga      2880
     atgggaagat caaaggataa cctgttcaag tggggatacg cagaagacga gctctgccaa      2940
     tgtggagaaa aacaaacaat gacacacctg ctgagctgcc catccttgcc ggcgccatgc      3000
     actttccaag acctgtggct ggccaacgac gctgcagtga agtgtgccga acactggaga      3060
     gagatatgag cctgctatgg acaataatga cgtatatgtg tgaaaatcat gagtatatat      3120
     gaatgtataa ttagtactta gtttttattt gtaatctagt atatgtagcc tattaattaa      3180
     ctacagatgt agctcagaca cgattaaata aaaataaa                              3218
//
ID   Vingi-40_LMi repbase;    DNA;    INV; 2897 BP.
XX
AC   .
XX
DT   26-JUN-2014 (Rel. 20.01, Created)
DT   26-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-40_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2897
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 329-329 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(388..750,665..1162,1233..1592,1609..2859)
FT                 /product="Vingi-40_LMi_1p"
FT                 /translation="RQYTSPGEKFNLICRQTSQPEKQFILGLQKYDDNGHK
FT                 LEQWAEINNFSLIHDPKLPCSFSSKIWKRESNPDICFVSANVEDRCLRTHT
FT                 HLFLKHKPIIRKKMPLNSEKANWTESLWNWMQKNTNRLSEKKCRSILKKPT
FT                 GQSRYGTGCRNKKSPPNPRKLSNFAETLQKISRRHIPRGCRQHFIPGLSDE
FT                 SKNTLRKYEVLYEQDPFSEEVAQCGETLMEMISESRQRKWVETVERMDMTH
FT                 SSKVAWNLIRKLNCDSKTVKQCPPVTPNQIAHQLLLNGNPTRNVRKSWDEF
FT                 NENGKAAGVDDICVEQIKQLGPSAKLWILQLFNHCLKTYNIPNMWRKSKIV
FT                 ALLKPGKDAGQPKNYRPIALLCHLYKLYERMILNRIANIDQKLIPNRIQTG
FT                 KSCTSQSQPSQNTTKKYRLALVDLSSAYDXVNHRILMRKLYSTFKDHHLTK
FT                 IIESLLQNRQFYVMLDGRKSRWRRQKNGLAQGSVLAPLLFNLYTNDQPTPE
FT                 HTTHFLYADDLAITAQGNSFEEVEEKLESSLNIMSEYYKENSLKPNPSKTQ
FT                 VSAFHLRSKQANRKLNVTWNDSKLEHSDRPTYLGVVLDRSLTYKYHCEKTC
FT                 QKVAARNNILRKLTNSKWGASPTVLRTTAQALCFSTAEYACPVWSRSTHAK
FT                 KVTTALNETCRLTTGCMKSAPLVKIYKAAGFSSPECRRTAHEYTEKFKQTF
FT                 DERHPLHGSSCGRGRLKSRKRFLASELNEPPKDYPASREMPSGSTTSWKIW
FT                 RTLNRIRTGVAPVKANLVKWGFKEGDNKCDCGEVQDMEHLLQCSICPTRCT
FT                 LDELWLEKREALDLARHWAERL"
XX
SQ   Sequence 2897 BP; 1045 A; 683 C; 583 G; 585 T; 1 other;
     caatcacctg tcggataatg ccggcgtccc cgggagacgc tgcaacaaaa ggcagcggcc        60
     aatccttcca acaccggaaa agcaaaaaga atgggcactt ctcgagccac tgacgattgc       120
     aagcttgaac gtagagggta tcaccaaaaa caaacaacta aattctatca caactttgcc       180
     gcacgcaaaa atgggacata ctgtgtatat aagaaacaca taagaaagaa agggaataaa       240
     ccagaaatag aaggaatgaa attagccata gaaaccaatc ctaaatatgg cagtaccgtc       300
     ttcacaaaac ctgagatagc catagtgcaa ctaacaaaac aacatacaat aacatagaat       360
     tatttgagtg cagcaccttc accgtaacgt cagtatacaa gccctggaga gaagttcaac       420
     ctgatttgcc gccaaacttc acaaccagaa aaacagttca tcttagggct acaaaaatat       480
     gatgacaacg gacataaact agagcagtgg gcggaaataa ataatttctc cttgatccat       540
     gatcccaagc taccatgctc gttcagtagc aagatttgga agcgcgaatc caaccctgat       600
     atctgttttg taagcgcaaa cgtggaagat cgatgcttga gaacgcatac gcacctcttc       660
     ctaaaacaca aaccgattat cagaaaaaaa atgccgctca attctgaaaa agccaactgg       720
     acagagtcgc tatggaactg gatgcagaaa taaaaaatct ccgcccaatc ccagaaaatt       780
     atcaaacttt gcagagaccc ttcaaaagat ttctcgaaga catatacccc gaggctgtag       840
     acagcatttc attccaggcc tctctgacga atcaaagaac accctgagga agtatgaagt       900
     gctttacgaa caggatccct tcagtgaaga agttgcccaa tgtggagaaa ccctaatgga       960
     aatgattagt gaatcaagac aaaggaaatg ggtcgaaacc gtggaaagaa tggatatgac      1020
     ccacagtagc aaagtcgctt ggaacctaat cagaaaactt aactgtgact ctaagacagt      1080
     caaacagtgc cctccagtaa cacccaatca aattgcccat caacttctac taaatggaaa      1140
     cccaacaaga aatgtcagaa aataaaaata agcagatctc agagtcaaga atcaagcacg      1200
     tttgaaacac catttaccgt aaaagaactt aatcatggga tgaattcaat gaaaatggga      1260
     aagcagcagg agtcgacgat atatgtgtgg aacagatcaa acagcttgga cctagtgcca      1320
     aactatggat tttacagctc tttaaccatt gcttaaaaac gtataacatc ccaaatatgt      1380
     ggaggaaatc aaagatagtg gcactactaa aacctgggaa agacgcaggc caaccgaaga      1440
     actaccgccc aatagcactc ctatgtcatt tgtacaaact gtacgaacga atgatcttaa      1500
     accgcatagc aaatatcgac caaaagctca ttcccaacag gattcagacc gggaaatcat      1560
     gcaccagtca atcccagccc tcacagaaca catagaggaa ggttttgaac aaaaaaatac      1620
     aggttagctt tggtggactt aagttctgca tatgacascg tcaaccatag aattctcatg      1680
     agaaaactat acagtacatt caaggatcat catctcacaa aaataattga atctctgtta      1740
     caaaacagac agttctatgt aatgctggat ggtagaaaaa gccgatggcg ccgacagaag      1800
     aacggtctcg cccagggcag tgttctggcc cccctactat ttaacctata caccaatgat      1860
     caaccaacac cggaacacac tacccatttc ctgtacgccg atgacttggc cattacagca      1920
     caaggaaata gcttcgagga agtggaagag aaactagaaa gttcgctaaa cataatgtcc      1980
     gaatactata aagagaactc cctcaaacca aacccttcga agactcaagt tagcgcattc      2040
     caccttcgct caaaacaggc aaacaggaag ctgaatgtca cctggaatga cagcaagctg      2100
     gaacattcgg acagaccaac atacctgggt gtcgtgctgg atagatcact gacgtacaaa      2160
     tatcactgcg aaaagacctg ccaaaaggtt gctgccagga acaatatctt aaggaaactg      2220
     acgaacagta aatggggagc cagtccgact gtattacgaa caactgctca agcactctgc      2280
     ttttccacgg cagaatatgc atgccctgta tggtcccgat ccacacatgc caaaaaagtc      2340
     accacagccc taaatgaaac atgcaggcta acaacaggat gcatgaaatc cgcaccactt      2400
     gtgaaaatat ataaagcagc tggattctca tctcctgaat gccgaagaac tgctcatgaa      2460
     tacacagaaa aattcaaaca gaccttcgac gagcgccacc cgctgcatgg ttcctcatgc      2520
     ggacgtggca gacttaaatc ccgcaagaga ttcctcgcca gtgagctgaa tgaacccccg      2580
     aaggactacc ctgcttcacg agaaatgccc agcggcagca caacaagctg gaagatctgg      2640
     agaacactga atcgtatcag aacaggcgta gcaccagtca aagcaaatct agtcaaatgg      2700
     ggtttcaaag aaggagacaa caaatgcgac tgcggtgaag ttcaagatat ggaacatctt      2760
     ctacagtgtt caatctgccc cacgaggtgt acccttgatg aactatggct tgagaagaga      2820
     gaagcattgg acttggcccg acactgggct gaaagacttt gaaacaaatt tccggacacg      2880
     aaaaagtaaa gtaagtt                                                     2897
//
ID   Vingi-41_LMi repbase;    DNA;    INV; 3009 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-41_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3009
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 330-330 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(840..1913,1837..2976)
FT                 /product="Vingi-41_LMi_1p"
FT                 /translation="KNYRFCPEHLTRHIPRGCRTQYIAGLNDNSKEALRKY
FT                 EELYNRDPFSEETIQAGEVLMCGISEARKEKWCNLLQETDMKFSSRKAWKL
FT                 IKHLSNDPTEPPPNYNKVTPDQIAHQLLMNGKTKKKIRNCKIKRNFNAENC
FT                 FLARPFLINELQDAINELKNNKAAGLDDLRSEQIKHFGPGAQSWILQLMNN
FT                 CITAMQIPKLWRKARVVALLKPGKDPGEAKNFRPVSLLCHLFKVLERMILK
FT                 RISHYVDKALINEQAGFRPGKSCCGQILNLTQYIEDGYQRGEVTGVAFLDL
FT                 SAAYDTINHKLLTQKVYNVTKDYTLSMFVQCMLQNRLFYVSLQTKNSRWRK
FT                 QKWTCTRQCSGSNTFACKPKTADGGNKNGLAQGSVLAPILFNIYTNDLPIN
FT                 QQTRMFIYADDAAVATQDKTFEQVEENLTGALTELATYYEDNNLKPNPSKS
FT                 QVSAFHLRNKQADQKLHVTWKGEELEHTNSPKYLGVTLDRALTFKQHCHNT
FT                 KKKVCARNNILRKLTGSSWGAQPHVLRTTGLALSISAAEYAAPVWRNSAHA
FT                 KQVDIAVNETVRIATGCLKPTPTAKIYPIIGIAPPAVRRKVSAEIEMSKLK
FT                 NDPRHPMHLHRKQGVRLKSRKSFIDTTEELFTKPSIRXISLWKETAPHSVM
FT                 DLREEGSAGFELPFPTWKTLNRLRTGVTRSKSDLLKWGYSDDNSCECGAVQ
FT                 DFNHLLTCPNMSITCTMDDILKVNDKAIYVADYWKGRI"
XX
SQ   Sequence 3009 BP; 1019 A; 685 C; 660 G; 644 T; 1 other;
     agattgcatt caccactcga acatcaacat gcagtcgggc cccctggaaa cgacgtagtc        60
     ggccaatcct gcaatcaccg gtgcaccaaa accaaagatg cagaagctct cagaagagcc       120
     ccaagaaagg cctttatcaa gaccatccct tgtgacaact tcctgcaata ttgaaggctt       180
     atctgtaaat aaagaaattt tattatctga catgtgcaag cgcaacaact gtgatgtttt       240
     agtgttgcaa gaaacacata gagcaccaac tagccataga ccaaaaatac atggcatgaa       300
     attagttctt gagagaccac atgaaaagta cggaagtgct atttttgtaa aacctaattt       360
     ggacgtacgc tcctgtgcac tgacctgtga agaaaatgtg gaaatcctaa ctattcaact       420
     acatccaaca tctgtataca aacaccttag aacgttacaa agagaacata atgttgtacg       480
     gagattttca ctgccacagt attgcttggg gctatgatca gatgaatgag ggcgaaaagc       540
     tggagatctg ggcagaccag gctaactgaa attgatacac gatccaaagc tgccggcatc       600
     atttaagagc ggaagatggg gcgaggaata atccagacaa catttttgtt tctgaaatgg       660
     ttgctcacag tgtaaagcaa atcgagaacc cgattccaga tcgcaacaca gccaataact       720
     tgtcgcgata aaaccagaaa tacgccctta agagacgttt caatttcaag aaagctcact       780
     gggaacctta cgggactgac aaggagatcc tggaaataaa acctgaggca caagcataaa       840
     aaaattatag attttgccca gaacatctca cgcgacacat acctagaggg tgccgtacac       900
     agtatatcgc cgggctcaat gataatagca aggaagctct gagaaagtat gaggaactgt       960
     acaataggga tcctttctca gaagaaacaa tccaggcagg cgaggtactg atgtgtggta      1020
     tttctgaagc aagaaaagaa aagtggtgca acctcctaca agagactgac atgaagttca      1080
     gcagcagaaa ggcatggaaa ctgatcaaac atctaagcaa cgacccaacg gaaccaccac      1140
     caaattataa taaagttaca cctgatcaaa tagcccacca actgcttatg aatggaaaaa      1200
     ccaaaaagaa gatcaggaat tgcaaaatta aaagaaattt taatgcagag aactgtttcc      1260
     ttgctcgccc gttcttaatt aatgagctgc aagatgccat taatgaactt aaaaacaata      1320
     aggccgctgg tctcgacgat ctgagatccg agcaaattaa gcacttcggg ccgggagcac      1380
     agtcatggat actccagcta atgaacaact gcattacagc gatgcagatt cctaaactgt      1440
     ggaggaaagc tagggttgtt gcgctattaa aacctggaaa agaccccggt gaagcaaaaa      1500
     acttccgtcc ggtctccctg ttgtgccacc tatttaaagt cctggaacga atgatcctca      1560
     agcgcatatc acattatgtg gacaaagccc tcattaacga acaagcagga tttcgaccag      1620
     ggaaatcatg ctgtggccag atacttaatc tcacacaata tatagaagac ggctaccaga      1680
     gaggagaagt aactggggtt gcgttcctgg atctcagcgc cgcatatgac acaatcaacc      1740
     ataagctgct tacccagaaa gtatataatg tcacaaagga ctacacccta tctatgttcg      1800
     tgcaatgcat gttacagaac agacttttct atgtaagctt gcaaaccaaa aacagccgat      1860
     ggaggaaaca aaaatggact tgcacaaggc agtgttctgg ctccaatact ttttaacatc      1920
     tacacaaacg atcttcctat caaccaacag acaagaatgt tcatctatgc tgatgatgca      1980
     gctgtggcca cacaggataa gacctttgaa caagtggagg agaatcttac cggagcctta      2040
     acagaattag cgacctacta tgaagataac aacctaaaac cgaaccccag taagtcgcaa      2100
     gtctccgctt tccatctcag gaacaaacaa gctgaccaga aactccacgt cacgtggaaa      2160
     ggggaagagc tggagcacac aaatagtccg aagtacctgg gagtgacatt ggacagagcc      2220
     cttactttca agcagcactg tcacaacacc aagaaaaagg tctgtgccag gaacaacata      2280
     ctgcggaaac tgacaggttc gtcgtgggga gctcagccac atgttctgcg caccaccgga      2340
     ctagcgctca gtatctcagc agcggaatat gcggcgccag tgtggaggaa ctcggcgcac      2400
     gctaaacaag ttgacatcgc tgtgaatgaa acagtacgta tcgccacagg atgcctcaag      2460
     ccaactccaa cagccaaaat ttatcctatc ataggcatag caccacccgc tgttcgaagg      2520
     aaggtctccg ccgagataga aatgtcaaaa ctaaagaacg atcctcgaca cccgatgcat      2580
     ttgcaccgca aacaaggggt ccggttgaag tcccgcaaga gtttcattga cacaactgaa      2640
     gagctcttca ccaagcccag cataaggmgt atatctttgt ggaaagaaac ggcgccacac      2700
     tccgtgatgg acctccgtga ggagggatct gcagggtttg aacttccatt tccaacttgg      2760
     aagacattaa accggctgcg cacaggagta actagaagca aatcagacct actgaaatgg      2820
     ggatatagtg atgataacag ttgtgaatgc ggggcagtac aggattttaa ccatctactg      2880
     acttgtccaa acatgtcaat aacatgtact atggacgata ttcttaaagt aaacgacaaa      2940
     gcaatctatg ttgctgatta ctggaaaggg agaatataat tggtgtaacc ggacacggaa      3000
     gaagaagaa                                                              3009
//
ID   Vingi-42_LMi repbase;    DNA;    INV; 2864 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-42_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2864
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 331-331 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(422..607,597..1307,1311..1451,1465..1884,
FT                 1877..2833)
FT                 /product="Vingi-42_LMi_1p"
FT                 /translation="RNGQMLIILYLFMTQNCHHHFTVKYGNKALIRISASA
FT                 VLIWRQXASRQFITHSQRHNIDQLATSWPECLRRHKTADDTSRRRFNFRKA
FT                 NWTDFTSTLDNCIDELEPIPGNYERFVEKVRYISRITIPRGCRQQYIPGLS
FT                 GESKGLLDQYNEMYEKDPFSNETEEVGNLLLKELSRTRQEKWVETIERLDM
FT                 TXSSKMAWNMMKKLSADPIAPKQASNTTADQIAHQLLISGKTGTKPRSRKI
FT                 HRNLESEVSLIDTPFGIKDLDNSIQSLKTGKAAGVDDICTEQIKHFGKNKT
FT                 VDPTTNKVLLNKQIPKSWRKSKVIALLKPSKDPNLASSYRPISLLCHHSKF
FT                 MSGNSELCGRKTNSRTRRFPPRKIMYRAGIGADRTHRERLRGENITGVVFV
FT                 DLSAAYDTINQRTLLAKVYNITKDYELTKVIESLLQNRRFYVTLEGKKSRW
FT                 RTQKNGLPKAVFCPQCCSTFTQTTNLLLVIQSTSFMLMTWPLGHSSSGQKL
FT                 PAVEERLQNALSQMSVYYKENSLKPNPAKTQACAFHLKSKEARRKLQIKWD
FT                 GFSIEHTAQPKYLGVILDRSLTYKSHCQKTRQKTATRNQLLKKLIGSKWGA
FT                 SPHVIRTTAEAVCFSTAEYACPVWNRSAHAKEVNIALNETCRLMTGCLKAT
FT                 PLGQLYKAAGCEAPATRRLAVEHTERFRQAFDDRHPLFEAPEPLRRLKSRR
FT                 SFLRSVPMEPPDKYPLTQKPPPGYHLDWRSWKSLNRLRTGVAPVKTNLVKW
FT                 GIIDESDVRCNCGERQNMEHLLTCKNCPRTCSLDDLWNARDNALDVARYWA
FT                 DVL"
XX
SQ   Sequence 2864 BP; 989 A; 647 C; 616 G; 609 T; 3 other;
     gctaataagc ataaacattg agcgcttggc caacgataag caggagctgc tctcggaatg        60
     tgcagaaata caaatgtcac attctgtgca tcagagaccc agacaccaat taacctcgtc       120
     caacatacca ggaatgaagc ttgtaattga ggtatcacac aaaaaaatat ggtagtacaa       180
     tctatgtaga accggaccaa attataacat cagtgggctc aacaaacatg acaatttaga       240
     aattctaaca gtggaaactg acaatgcaca ataacaagtg cgtacaagcc cctagccaaa       300
     aattcatatt aatgaacaca taattttaga acaaaataac aactgcttca tcctgggtga       360
     ttttaacagc catagcacta catggggata tgaagaacta acaccaatgg aagtcttgta       420
     gaggaatggg cagatgctaa taattttata cttgttcatg acccaaaact gccatcatca       480
     ttttacagta aaatatggaa acaaggcact aatccggata tctgcttcag cagtgctaat       540
     atggaggcaa gawgcatcaa gacagtttat aacccactcc caaagacaca acatagacca       600
     gttggcctga atgtctacgc agacataaga ctgcagacga tacctctaga agacgtttca       660
     actttcggaa ggcaaactgg actgatttca ccagtacwtt ggataactgt attgatgaat       720
     tggaacccat tccaggaaac tatgaacgtt tcgttgaaaa agttaggtac atctccagga       780
     taacaatacc aagaggatgc cgacaacaat acatcccagg cttatccggg gaatctaaag       840
     ggcttctgga ccagtataat gaaatgtatg agaaagaccc tttcagcaac gaaacagaag       900
     aagtgggtaa cttactactc aaagagctga gtcgcactcg acaagaaaaa tgggttgaga       960
     caattgaaag gttggacatg actmatagta gtaagatggc ttggaatatg atgaagaaac      1020
     ttagtgcgga tcctatagca cctaaacaag ccagtaatac caccgctgat cagatcgccc      1080
     accagttgct gatcagtgga aaaactggca caaaacccag atcaaggaag atccacagaa      1140
     acctggaaag tgaagtctca cttatcgata cacctttcgg aatcaaggac ctcgacaaca      1200
     gcatccaatc cctgaaaact gggaaggcag ccggagtgga tgatatctgc acagaacaga      1260
     taaagcactt tgggaaaaac aaaacagtgg atcctacaac taataaatag gtgctactca      1320
     acaaacaaat accaaagtcc tggagaaaat caaaagtcat cgcattactg aaacctagca      1380
     aagatcctaa tcttgccagc agctacagac ccatctctct tctatgccat cattcaaaat      1440
     ttatgagcgg ctaatactta ataaaattca gaactatgtg gacgaaaaac taattccaga      1500
     acaaggaggt ttccgcccag gaagatcatg tacagggcag gtattggcgc tgacagaaca      1560
     catagagaga ggcttcgagg agagaacatc actggagtcg tcttcgtaga cttatcggcg      1620
     gcttatgaca ccataaacca aagaactctt cttgcaaagg tatacaatat taccaaagat      1680
     tacgagctca ccaaagtaat cgaatccctc ctacaaaaca ggagatttta tgtaacctta      1740
     gagggaaaga agagcaggtg gcgaacacaa aagaatggcc tccccaaggc agtgttctgt      1800
     ccccagtgct gttcaacatt tacacaaacg accaacctac tcctagtgat acaaagcact      1860
     tcctttatgc tgatgacttg gccatagcag ctcagggcaa aaacttccag cagtcgaaga      1920
     gagattgcaa aatgccttgt cacagatgtc ggtctactac aaggaaaatt cattgaagcc      1980
     caacccagca aagacccagg cgtgtgcctt ccatttgaag tctaaggaag ccaggaggaa      2040
     actacaaatt aaatgggatg gtttctctat agaacacaca gcccagccaa agtaccttgg      2100
     ggtaatactc gaccggtctc taacatacaa gtctcattgt caaaagaccc gacaaaagac      2160
     agcgaccagg aatcaacttc tgaagaagct gataggaagt aaatggggag ctagccccca      2220
     cgtgatcaga acgacggctg aagcagtgtg tttttccaca gctgagtatg catgcccagt      2280
     gtggaacaga tctgcacacg caaaagaggt gaacatcgcc ctcaacgaaa catgtagact      2340
     tatgactggc tgtttgaagg caacgccact gggacaactc tataaagcgg ctggttgtga      2400
     agcacctgca actcgacgac ttgctgtaga acatactgaa agatttaggc aagcattcga      2460
     tgatagacac cctctctttg aagcaccaga gccactgagg cggctgaaat cccgaagaag      2520
     ttttctgagg tctgtcccca tggaaccacc agacaaatat ccactaactc agaaaccccc      2580
     accaggctat cacttggact ggagaagctg gaagtctctg aaccgtctca gaacaggagt      2640
     cgcccctgta aagacgaacc tagtgaaatg gggaatcatc gacgaaagcg acgtcagatg      2700
     taactgtggg gagagacaga atatggaaca tctcctgacg tgcaagaact gcccaaggac      2760
     ctgctccctt gatgatttat ggaacgctag agacaacgcc ctagacgtgg cccgatactg      2820
     ggctgatgtg ctatgacatg gattcggaca cgaaaaagta atgt                       2864
//
ID   Vingi-43_LMi repbase;    DNA;    INV; 2701 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-43_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2701
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 332-332 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(765..1376,1439..2314)
FT                 /product="Vingi-43_LMi_1p"
FT                 /translation="NCTPAHRKWKIYCTAKTSKKTFERKPDQETSILHQPF
FT                 TQAELEYALNKTKNGKAAGLDDIRVEQIKNFGPATKHWLTELMNNCIQSCK
FT                 IPKLWRKARAIAIRKPGKDPNYPKSYRPISLLCHLYKILERLILHRLMEKL
FT                 EAVYIPQQAGFRTGKSCTSQVLKLTQHIEDGFERKQITGAVFIDLTAAYDT
FT                 VNHKTTPYETIQCYISGERSRWKSQRNGLPQGSVLSPSLFNIYTNDQPLPV
FT                 GTQSFIYADDCAITTQDTCFDAIEQKLSNALSVLSDYYKENQLRPNPSKTQ
FT                 TCAFHLINKMANRTLKITWEGTALEHCISPKYLGVTLDRALTYQKHCSNTK
FT                 QKVAARNNIIRKITGTTWGAHPNTVRTSSLALCYSAAEYASPVWYKSCHAR
FT                 MVDAALNDTCRIITGCLRPTPLDKLYRLAGIAPPDIRREVAAKMRRRRRKH
FT                 LKLTLCMDTGQLLQDSNLGKVSSEQQRLLTGHLSNPESTCGAQAALAPKNG
FT                 "
XX
SQ   Sequence 2701 BP; 882 A; 620 C; 565 G; 633 T; 1 other;
     tctctttccc cccacctaaa aatttcaatc cagagaaggc agctgtagta ataagagatt        60
     tcaatagtca cagccacgtg tggggataca cacatgaaga tgaaaacgga gaagctgttc       120
     tttcttgggc tgaaagtaac acctctctct catccatgac agcaaactac ctgcatcctt       180
     caacagtggg agatggcaac gaggatttaa tccagatctc cttttgtaag cgagagtata       240
     gcacaacaat gtcgtaaacc tgtggctcgc caatccccaa aacacaacat agaccaataa       300
     tgtgtcagct acttcctgtt ataagacctc aagaaacacg cttcaggtga cgatacaact       360
     ttagaaaggc taattggtca aagttttccg aaatgttcga tgagaaagtt cagactatcc       420
     cagccatacc tgaagaatat gaacatttcg ttgatgttgt gaatctctgc tctcggacat       480
     gtattccaag aggctgtagg acaaactata ttcaggagaa ctgcagagag aagtgttact       540
     agatgaatat tacaaatcat acaacgaaaa cccatttagt gaggaaacct ccaatgtgca       600
     gcgtgtattc tatcttcaat ctctgaggca aagagagacc aatgggagaa actgatggca       660
     gactgtgata tgagtaggag cagtcaaggg gcttggagat tactacggcg cctaaataat       720
     gaccgttctc aaacaagcat tcatgcaaat gtcaaagctg atgaaattgc acaccagctc       780
     atcgaaaatg gaaaatctac tgcaccgcca agactagcaa gaagacattc gagagaaaac       840
     ctgatcaaga aaccagtatt ctacatcaac ctttcactca ggctgagctt gagtatgcac       900
     tgaacaaaac caagaatggt aaagctgctg gccttgacga cataagagtt gagcaaatta       960
     agaacttcgg tccagccacg aagcactggc taacagagct gatgaacaac tgcatccaat      1020
     catgcaagat cccgaaatta tggaggaaag ccagagccat agctattcgc aagccaggta      1080
     aggatccaaa ttatccaaag agttatcggc cwatctcgct cctttgtcat ctatacaaga      1140
     tcctcgaaag actcatactc catagactaa tggagaagtt agaggcagtc tacataccac      1200
     agcaagctgg attcagaact gggaagagct gtacatctca agtgctgaag ctaacgcagc      1260
     atatcgaaga tggtttcgaa aggaaacaga tcactggagc agtatttatc gaccttacag      1320
     ctgcatatga taccgtcaac cataagacga ctccttatga aactatacaa tgctactaat      1380
     gactaccagc ttacctgctt cataaggaac atccttgaaa acagaagatt tttgttgaat      1440
     ttcaggggaa agaagcaggt ggaaatcaca gaggaatgga ttacctcagg gaagtgtgct      1500
     ctccccgtca ttgttcaaca tctacaccaa tgaccagcca ctacccgtag gaacacagag      1560
     ctttatctat gcagatgact gtgccattac cactcaagac acctgctttg acgctattga      1620
     gcagaaatta tcaaacgcac tttcagtgct gtctgactac tacaaggaga atcagctgag      1680
     accgaacccc agtaaaactc agacttgtgc cttccacctc ataaataaaa tggcaaacag      1740
     aactctcaaa attacttggg aaggaactgc attagaacat tgcatctcac caaaatatct      1800
     tggagtaacc cttgatcgtg ctctcactta ccagaaacac tgctcgaaca ccaagcaaaa      1860
     agtggcagcc agaaataata ttataaggaa gataactggc actacctggg gagcacatcc      1920
     caatactgtg agaacctctt cccttgctct atgttactct gcagccgaat atgcatcccc      1980
     agtatggtac aagtcatgtc acgcgaggat ggtagatgct gctctcaatg atacctgtcg      2040
     catcattacc ggatgtctaa gacctacccc gttggacaaa ctgtaccgtc ttgctggtat      2100
     tgcccctcct gacatccgtc gagaggttgc agcaaaaatg agaagaagaa ggcggaaaca      2160
     tctgaagctc accctctgta tggatacagg ccagctactc caagactcaa atctaggaaa      2220
     agtttcctca gaacaacaga ggctcttaac gggacacctc agcaatcccg aatcgacatg      2280
     tggcgcgcaa gctgcactcg ctccgaagaa tggctgacac ctagcgaaga actaccaccc      2340
     ggtcacatgg agaaatggag tacttggaga tcactgaaca gattacgggc aggcgtgaca      2400
     agatgtaaaa gcaacctaca gaagtggggt ttcaacaccg agcccccatt gtgtgagtgt      2460
     ggtgcaatcc agacgacgtc tcatttgttg cagtgtagtt ggtgccctaa aacatgcaca      2520
     gtacaagatc tgcttcaggc tacagaagat gcactggatg tcgccaactt ctgggcaaaa      2580
     gtagtataga caattttgta aagtgtgact ttgtatataa tgtatataat ccagtaaaag      2640
     tttctttctt tgtaaatgta tacctagtat taatgcttct gatacgaata aataaataaa      2700
     t                                                                      2701
//
ID   Vingi-44_LMi repbase;    DNA;    INV; 1640 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-44_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1640
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 164-164 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
SQ   Sequence 1640 BP; 522 A; 349 C; 365 G; 404 T; 0 other;
     ttccagaggt atgacggaag agccgtgtga ttgccctgat gaaacctggt aaagaaggga        60
     acaacccgaa aaattttaga ccagttgcac ttctgagtca cctctacaaa ctgctggaaa       120
     gattgatctt aaatcgcctt ttacctgtaa ttgaccctgt gcttatacct cagcaagctg       180
     gatttcgtcc tggtaaaagt tgtactggac agttgtgaat ttacacaatt tatagaagat       240
     gggttcgaag ctcgtaaggt aactggagtg gtatttgttg acctatcagc agcgtacgac       300
     accgtcaacc atcagctact gtcaactaag gtctacaacc tgagtaagaa ctatgaccta       360
     accaggttca tcgccactct tttgcagaac cgtaggttct tcgttgactt ccaaggacag       420
     cgtagtcgat ggagactaca gaagaatggt cttcctcaag gaagtgtgct agctccaatc       480
     ctgttcaata tatataaaaa tgaccaaccc atagccccca acagcaggag tttcttgtat       540
     gctgatgatc tcgctcttgc cacacagagc acaaactttg aatcagtgga gaacacccta       600
     acgaatgccc ttgaagatct gtcaagatac tacactacaa accagcttaa accaaatcct       660
     tccaagacac aagtatgtgc ttttcatctg aggaacaggg aagccactcg taggttaaag       720
     gtggtatggt caggggtcga actggaacac tgtgataatc cgaaatacct aggaatgaca       780
     ctcgacagat ctcttacata caagaagcat tgcatgaaca ccaagtcgaa agtttccaca       840
     aggaataatc tccttagaaa actggccggt tcacaatggg gtagccaacc tgaaaccatc       900
     cgaacttctg caatggcatt gtgttattct actgcagagt acgcctgccc cgtttggtat       960
     aactcactca tgccaaacag gtagatatag ctcttaatga cacatgcaga attataacgg      1020
     gatgtttaaa atccactcca atcgagtggc tttaccacct tgcaggaata gcaccacctt      1080
     ctgttcgaag agaaataata gcgagcaagg aaaggaagaa agtggagcag gaaataactc      1140
     atcctttata tggacatgag ctgcatgtgc aaagacttaa gtcccggaag agtttcttga      1200
     gaacatcaac agaacttaca accacagatg aaaaagccag attgcaattg tggaaagcta      1260
     aggccacttt accacctggg tggaaaagag tatctgaaac tttaccacct ggtcatgaca      1320
     agggatggct gacatggaag tccttgaata ggttgagatc cggagtgggc agatccagag      1380
     ttaatctagc aagatggggc tacgctgagg aagataccat caagtgcgag tgtggagaag      1440
     accagaccat gaaacatatg cttcaatgtc gactgtgtcc aaccacctgc acggaagacg      1500
     atctttatca ggcatcggag aacgcattgg aagtggccaa gttttggtca catgtaatat      1560
     aatgtgtata actgtgttaa taaagtgtta ataactgtgt aaatatgtat gtttctgaca      1620
     cgagaataat aatagtaata                                                  1640
//
ID   Vingi-45_LMi repbase;    DNA;    INV; 2881 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-45_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2881
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 333-333 (2015).
XX
DR   [1] (Consensus)
XX
CC   >89% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           992..2734
FT                 /product="Vingi-45_LMi_1p"
FT                 /translation="SPIQSHGFKPRAGGSPGKCAYKQSGCFDGIYPEFLKN
FT                 AGPKTKRWLLQLYNIILTTGKLPTTFRAAKVIAVRKPGKEGSEASHYRPIS
FT                 LLSVVYKLLERMLLNRIQPLIDKATPLHQAGFRKNRSCCDQVLALTSFIEA
FT                 GYQRKLKTAVAFVDLTAAFDTVWRHGLLLKFAEAIPCQKLVNLMDSMLSNR
FT                 RFQVFLGDKGSRWRRLNDGLPQGSVLSPTLFNLYTSDMPNTSAKKIQFADD
FT                 LALAYQARNLEECEGTLTTDLHIMGDYFKSWRLKPNPTKTEVNAYHLNNRE
FT                 ANRKLNVVFENVPLEHNPYPKYLGVILDRALTFKNHLEYVAKKVNTRIDIV
FT                 RKLAGSGWGANADTLRTATLALVYSTAEYCAPVWKNSAHVRKVDVKLHQAM
FT                 RIISGTTKSTPLPWLPVLCNIPPPSIRREAAAIREFHKSSTHKNSLLYNQL
FT                 RNIPTSRLKSRKPPWPMQDSPLVYDVCQEWKDVWKKFPPANSRLITDPTKR
FT                 VNGFGLPRKLWTSLNRFRTGHGRCSACLYEWGYKDAPACDCGAPVQTMQHL
FT                 IEECPPRKFPGGLSELHLVTTRAVEWLRDLDVQL"
XX
SQ   Sequence 2881 BP; 940 A; 618 C; 602 G; 721 T; 0 other;
     gacgaacaac atgttacgga atagcaatgt atgtcaggat gaacatagct gattatagag        60
     tggtttctaa ggactctaca gacaacattt atatcttagc agtgacgata tgtggaacta       120
     ctattgtcaa catctataaa cccccattag tcatctggcc tacgccccca ttcaaacttt       180
     ttactgaccc tgccatctat gttggagact ttaatagcca tcaccatgct tggggataca       240
     agaataatga tataaatggt aacattttac atgactggct gtccttgaat aatttgtatc       300
     tggtctttag tgcaaaggac aaaggaacgt ttcgatcagc aagatggcag aaagacacat       360
     caccagacct atgttttaca ctaccagtca agctaatgga aatcaactgg caaacaggaa       420
     agttatagat tcttttccac atagtcaaca tacgcccatt atcattgact atggcatcca       480
     gataccatta gtaaattcaa ctgccaaagc tcgttggaat tttaaaaaag tgaactggca       540
     acagtatgct gacaaacttg atgtgactgt tgactcatcc ctgtgcaatt taataactat       600
     gacagatttg ctaaagctgt cagagaggta gcaaaaagaa cgatacctag agggaggaaa       660
     caaatattcc aggatggtcc aatgatgtga tgagctatat gaggaataca acttacacat       720
     tcaaataaaa cagcagacga acttcttcaa gctttgaatg agcacagaag aaggaaatgg       780
     caagaagcta cagagagcct cgacttcacc cattcgagtc gtaaagcgtg gcagctattg       840
     aagaaactgg gtgcagacta agcctgagag atgcaccata acgtcacaca aatgaagtcg       900
     cgacacgctt attgcaaact ctaaagcatc tgtgaacaag aaccgcacta ggctggtgaa       960
     gaacagttac gatccaaacg ctctcagcta gtcccccatc cagtctcacg ggttcaaacc      1020
     gagagctgga ggaagccctg gcaagtgtgc gtacaaacaa agcggctgtt ttgatggaat      1080
     ttatccagag ttcctgaaaa acgcgggtcc gaaaactaag cggtggttgc tacagctata      1140
     taatatcata ctgactactg gaaaactacc aacaacattt agggcagcaa aggtaatagc      1200
     tgtcagaaaa cctggtaaag aaggcagcga agcatcacat tacagaccca tatcactact      1260
     gagtgtagtc tataaactgt tagaaagaat gttgttaaac agaatccaac cattaattga      1320
     caaagcaaca ccattgcatc aagcaggttt ccgaaagaat cgcagttgct gtgaccaagt      1380
     attggcgtta acatccttca tcgaagcagg gtaccaacgt aaattaaaga ctgcagtagc      1440
     atttgttgat cttactgccg catttgacac cgtatggcgc catggcctgc tgcttaaatt      1500
     tgcagaggct attccctgcc aaaagctggt taatttaatg gatagcatgc tcagcaacag      1560
     acgatttcaa gtattccttg gagacaaagg gagcagatgg cgaaggctga atgatggact      1620
     accgcagggc tctgtgctat caccaaccct ttttaatctt tataccagcg atatgcccaa      1680
     cactagcgct aaaaagatac aatttgccga cgatctagca ctagcttatc aagcaagaaa      1740
     cctggaagag tgtgagggaa ccttgactac agatctacac ataatgggcg actacttcaa      1800
     gagctggaga ctgaagccaa atccaactaa aacagaggta aacgcttacc accttaataa      1860
     ccgcgaggca aatcgcaaat tgaatgtggt cttcgaaaat gtccccctgg aacataaccc      1920
     atacccaaaa tacttggggg tcattttaga tcgggctctt acctttaaga accatctaga      1980
     atatgtagca aaaaaagtga acaccagaat cgacattgtc agaaaactag ctggttcagg      2040
     atggggtgca aatgcagata ctcttcgtac tgctacattg gcgttagttt actccacggc      2100
     agaatactgt gctccagtat ggaagaatag tgcacatgta cgtaaagtcg acgtcaaact      2160
     acatcaagct atgagaataa tcagtggcac tacaaagtct acaccacttc catggctgcc      2220
     tgtattgtgt aatattccac ctccatcaat aagacgagaa gcagcagcaa taagagagtt      2280
     ccacaagagc tccactcaca agaactcact tctgtacaat caactgcgga atatacctac      2340
     cagcagactc aagtccagaa aaccaccatg gccaatgcaa gattcgcccc ttgtttacga      2400
     tgtctgtcaa gaatggaaag atgtttggaa aaagtttcct ccggctaact ctcgtcttat      2460
     aactgaccct acaaaacgtg tgaatggatt cggtcttccc agaaaactat ggacgtccct      2520
     gaaccgattc cgcacagggc atggaagatg cagtgcctgt ttgtatgaat ggggatacaa      2580
     agatgcccca gcgtgtgact gtggtgctcc tgtgcaaact atgcagcacc tgattgaaga      2640
     gtgtccacca cggaaatttc ctggaggact cagtgagctg cacttggtga caacaagagc      2700
     tgtagagtgg ttaagagacc tagatgttca attatagtat tttctctggt ttgtttgttt      2760
     gcttgctttt attatgcata tttgtacata gtttttgtat ttgtaattct tctatatatg      2820
     aaaattttca aataagactg tagcatgacc atgtaagcca tacgaataaa taaataaata      2880
     a                                                                      2881
//
ID   Vingi-46_LMi repbase;    DNA;    INV; 1638 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-46_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1638
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 334-334 (2015).
XX
DR   [1] (Consensus)
XX
CC   >91% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..1538
FT                 /product="Vingi-46_LMi_1p"
FT                 /translation="TKTWCMMGGFPLTLLFICSQTSNRTVIXXEQAGFRPN
FT                 RNCIDQVLSLTTFIEAGFQNKEKTSVVFIDLTAAYDTVWRPGVILKLLQAI
FT                 PSIKINHLINEMLSNRCFQVIMGNNISSPMKLNNGLPQGSVLAPLLFSLYI
FT                 SDMPETKSRKFGYADDWALATRHKDLETTESILTNDLSTIGEYFRKWRLQP
FT                 SATKTEVSTFHLSNKLANKELTVHFEGKVLRHNRNPKYLGVTLDRTLSYKQ
FT                 HLAKTAAKIKTRNNILQKLCGTSWGSSASTLRTSALGLVYPVAEYCSPAWL
FT                 NSSHTKLVDAQLNHTMRLITGTIRPTPTFWLPILSHIQPPSLRRKNALVSE
FT                 YKKLQKNPHLPVHEDIPSIRKARLRSRHPPLETARTLVTNSFNTDDCWRQT
FT                 WQINATPEQLKMPCISTKPPGFDLPRKDWSALNRIRTNTGRCADLLYKWKK
FT                 IASPSCDCGAEKQTVYHVVQECPLRAFAGDQTEFLMVTEGSLDYIHGLDIS
FT                 L"
XX
SQ   Sequence 1638 BP; 532 A; 386 C; 316 G; 399 T; 5 other;
     gagcgaaaat tatagcctta ctmaaccagt agcaaacsaa gtgataaacc aaaacttggt        60
     gtatgatggg cggttttccg ttaacgttat tgtttatatg ctcacagact tcgaaccgta       120
     ctgtkatacm akttgaacaa gcaggattta gaccaaaccg caactgcata gaccaagtcc       180
     tgtctctaac aacctttata gaagcaggtt ttcagaataa agagaagaca tcagtcgtat       240
     tcattgacct aacagctgca tatgatactg tttggcggcc aggtgtcata ctgaaacttc       300
     ttcaagccat accaagcata aaaattaacc atctcatcaa tgaaatgctc agtaacagat       360
     gcttccaagt aattatgggc aacaacatca gctcgccaat gaagctgaac aatgggctgc       420
     cacaaggatc tgtccttgcc cctctcctgt tcagcctata catatcagat atgcctgaaa       480
     ccaaatcaag gaagtttggg tatgccgatg actgggccct tgcaacgagg cataaagatc       540
     tagaaactac agagtccata ctgaccaacg atctatcaac aattggtgaa tatttccgaa       600
     aatggaggct gcagccaagt gccactaaga cagaagtatc aacgtttcac ctaagcaaca       660
     agctggccaa caaagagctc acggttcatt ttgaaggaaa ggtgctgaga cataacagaa       720
     accctaaata tctaggggta acacttgata gaacgctcag ttacaagcaa cacctagcaa       780
     aaacagctgc caaaattaaa acccggaaca acatcctcca aaaactctgt ggcacttctt       840
     ggggatcatc tgcatccact ctccgtactt cagctctggg tcttgtatac ccagttgcgg       900
     aatattgctc cccagcttgg ttaaacagct cacacactaa acttgtggac gctcagctca       960
     atcataccat gcgtcttata actggcacaa ttaggcccac accgactttc tggctaccca      1020
     tacttagcca catacaacct ccatctttac ggcggaaaaa tgcactagta tccgagtaca      1080
     aaaagctgca aaagaatccc caccttcctg tgcatgaaga cataccaagc ataagaaaag      1140
     caaggcttcg ctctcgtcat ccaccccttg agactgcaag aactttagtt accaacagct      1200
     ttaataccga tgactgctgg agacaaacat ggcagattaa tgcaacacca gaacaactga      1260
     agatgccgtg catatcaacc aagccacctg gctttgattt accgcgcaaa gattggtcag      1320
     cacttaacag aataagaacc aacactggaa ggtgtgcaga ccttctgtac aagtggaaga      1380
     aaatagcttc tccaagctgt gactgtggcg ctgaaaagca gactgtctac catgtggttc      1440
     aagaatgtcc cctgagagct ttcgctggcg accaaacaga gttcctgatg gttacggagg      1500
     gatcactgga ctatattcat ggacttgata ttagtttgta gtttgttaca cgtgtaatat      1560
     tatatgtatc tttgttatta aaacatcaaa taactgtaaa ttttgtgatg tagccatacg      1620
     ctaaataaat aagaaata                                                    1638
//
ID   Vingi-47_LMi repbase;    DNA;    INV; 3299 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-47_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3299
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 335-335 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(610..1719,1740..3068)
FT                 /product="Vingi-47_LMi_1p"
FT                 /translation="NSTLATTPKNSKPFALLGGTRTPTPTCVSCPPMTTHF
FT                 PSHIRNVLKGFPRSQHRPTIVKTGLEIPIIQSINKPRWNFKKANWEQYTQE
FT                 VDSNLRWVAPKVENYKRFVGIIIGATKRNIPRGLRKQYIPCWDDTIETLYA
FT                 EHQQTGNPDTGERILEQLNESRKQKWIDLTTSLNFTHSSRKAWGLLRKLGT
FT                 ATNICNNQPKITPSELALHLKSRAEKVPLDTTIKEKVKNELNEINRYLHNN
FT                 TTLSDPFTERDINEAIKTLKMGKAAGLDGIFPEFIRHIGEHGRTWLKKFYN
FT                 DILETGRVPELFKIAHTLAILKPGKPIDDPSSYRPIALLSVCFKLLERLIH
FT                 HRIKEIINNVTPTYQAGFRKGAAANRFGWIPKELKTSVAFVDLSAAYDTVW
FT                 LDGLLLKLKKHIPSKKLTTLLENMLTNRYFKVSVGQKQSKSFTVKNGLPQG
FT                 SVLAPLLFNLYTSDMPNTASEKFCYADDLAIAIQTSTLEEGETILSRDLET
FT                 LNKYYEAWRLQPNAAKTEVCAFHLNNRTAKQQLNVNFCQQRVRHSFQPKYL
FT                 GITLDRSLTYKRHLENTSQKVKTRNNIIRKLAGTTWGADASTLRTTALTLV
FT                 YPVAEYCAPVWQHSTHTRKLDVQLNDSMRVITGTLKSTPIPWLHTISNIPP
FT                 PQLRRQEATNREWRKLHHPNCPQDLPIHKTLNDPPPDRLKSRTPLWHKGRN
FT                 NFNIKEEWRKRWNADATAHHGVEDPTAGLPGFHLQRSVWTKLNRIRTGHAR
FT                 CNAMMHKWGLRDSPACDCGAQEQTVQHIVRDCPLRKYPGPFSDFINATPSA
FT                 TSWIQSLDIDL"
XX
SQ   Sequence 3299 BP; 1141 A; 788 C; 660 G; 707 T; 3 other;
     ggggtgcgat gtagacaact ccaagatggt gtaacctggg caacggactg ctgagtcagg        60
     acggcaaaaa gtctacacac acggcagcca tactggatca aaggtctcat agctatcaag       120
     acaacagcac aagaaaacag aacaaaggct cttatcggac caagtatcca catattacaa       180
     atcaatggag atttgtcaaa ggacaaatga gactactgag caaactggcc actgagcaca       240
     gtattgatat catagccacc caagggtccc atctaactga aaactacaca acaaagggta       300
     aaattgcagg atagaaaata ataggatacc tccaccatct atacgtggct tatcatgtac       360
     gccagaaaca gcctgtgtgc ataagagggt atgctgccag gtgatcagtg cacaggagtg       420
     attgctctga gtggcttaaa tgttgtctca gtctacaaac caccgaacat ccagtggctc       480
     agcccagtcc taccatctgt accccagcgt gcatatacct gggtgatttc aacagccacc       540
     atgtaaactg gggctataca aacagtgacg aaaatggaga aagactagtg gaatgggcag       600
     aakaagtaaa actctacctt agctacgacg ccaaagaact caaaaccttt cgctctgcta       660
     ggtggcacac ggacaccaac cccgacctgt gtttcctgtc caccgatgac aacacacttc       720
     ccctctcaca taagaaacgt cctaaagggc ttcccaagaa gccaacaccg ccccacaata       780
     gtcaaaacag ggctggagat acccataata cagtccatta acaagccaag atggaatttc       840
     aaaaaagcga actgggaaca gtatacacag gaagttgaca gcaatttacg ttgggtagcc       900
     ccaaaagtag aaaactacaa acgttttgtg ggaatcatca tcggtgcaac caaacgtaat       960
     attccccgag ggctcagaaa acaatacatc ccttgctggg acgacacaat agaaaccttg      1020
     tatgcagaac accagcaaac tggaaaccct gatactggtg aaagaatact agaacaatta      1080
     aacgaatcaa gaaagcagaa atggatcgac ttgactacta gtttaaattt cacacattca      1140
     agcagaaagg catggggatt attaagaaaa cttggcactg caacaaacat ctgcaacaat      1200
     cagccaaaga tcacaccatc agaactggca ctacacttaa aatcaagagc tgagaaggtc      1260
     cctctagaca caaccatcaa agaaaaagta aagaacgagc tgaatgaaat caatagatac      1320
     ctgcacaata acaccacact atcagacccc tttactgaaa gagatataaa tgaggccatc      1380
     aaaacgctga aaatgggaaa agccgcagga ctagatggca tattccctga atttataaga      1440
     catataggag aacatggaag aacttggctg aagaagttct acaatgatat actcgaaacc      1500
     ggaagggtac ctgaactgtt caagatcgca cacacattag caatcctcaa acccggaaag      1560
     ccaatagatg acccctcaag ttataggcca attgcactgc tgagcgtgtg cttcaaacta      1620
     ctggaacgtc ttatccatca cagaataaaa gaaataataa acaatgtaac cccgacatac      1680
     caggctggtt tcagaaaagg agctgctgcg aacaggttct agcctgacat cctacttgag      1740
     gctggattcc aaaagaacta aagacatctg tggccttcgt cgatctgtca gcagcatatg      1800
     atacggtgtg gctagatgga ctcctgctga agttaaaaaa gcatatccca agtaaaaaac      1860
     tgacgacact tctggagaac atgctaacca accgttactt caaggttagt gttggacaaa      1920
     aacaaagcaa gtcatttaca gtcaaaaatg ggctccccca aggatcagtc ctagcaccct      1980
     tgctcttcaa tctgtacaca agtgacatgc caaacactgc cagtgaaaag ttttgctatg      2040
     ccgatgacct tgccatagcc atacaaacca gcacacttga ggaaggagaa actatattat      2100
     ccagagactt agaaactctc aacaaatatt acgaagcatg gagactccag ccaaatgcag      2160
     caaagacaga agtttgtgca ttccatctga acaacagaac tgcaaaacaa caactcaatg      2220
     ttaacttctg ccaacaaagg gttagacaca gtttccagcc taaatacctg ggtatcacac      2280
     tggaccggtc tttaacgtat aaacgtcact tggaaaacac aagccaaaag gtaaagaccc      2340
     gaaataacat cattaggaaa ctggctggta caacctgggg tgctgatgca tcgacactac      2400
     gcactacagc attgacacta gtgtaccctg tagctgaata ctgtgctcca gtgtggcaac      2460
     atagcaccca tacgaggaag ttagacgtac agctgaacga ttcaatgagg gtcattacag      2520
     gtacactaaa atccaccccg atcccctggc tgcacaccat cagcaacatc ccaccacctc      2580
     aactgcgacg ccaggaagca acgaatmgag aatggaggaa acttcaccac cccaactgcc      2640
     cacaagatct tccaattcac aagaccttaa acgatcctcc tccagatcgc ctaaagtccc      2700
     gcactccgct gtggcataaa ggaaggaaca acttcaacat taaagaagag tggcgcaaga      2760
     ggtggaacgc ggatgcaaca gcacatcatg gcgtcgaaga cccaactgcc ggcctaccag      2820
     ggttccatct gcagagaagt gtgtggacaa aattaaacag aatwagaact ggccacgcca      2880
     ggtgcaatgc tatgatgcac aagtggggac tccgagattc tccagcctgt gattgtggtg      2940
     cccaagaaca aacggtccaa catatcgtca gagactgtcc tctgaggaaa tatcctggac      3000
     cattcagtga ctttataaat gctacccctt ctgcaactag ttggattcag tcactcgata      3060
     ttgatttatg attatctgta tatatgtatt tacttaagtt gtcatcgcat ctcttaaact      3120
     tgccactgtg ttaaattagt aagtccagaa ttcccacatg tattaaagta gtgtatttac      3180
     cacattagta aattttagta tttgaacata tgtattaaac ttgtatctaa tgtaaaacta      3240
     aataactgtc tcattgtaat gctcaatgct gctgttgttg ccatacgaca aataaataa       3299
//
ID   Vingi-48_LMi repbase;    DNA;    INV; 2592 BP.
XX
AC   .
XX
DT   27-JUN-2014 (Rel. 20.01, Created)
DT   27-JUN-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-48_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-2592
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 336-336 (2015).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
SQ   Sequence 2592 BP; 786 A; 584 C; 542 G; 678 T; 2 other;
     tgaattttga agtactccga caatgatgaa aatggaatca acttgcagaa tgggctgaag        60
     agaacaatct tcatttagtt ttcgatgtca aagttcaagg tactttcagg tcagccgcga       120
     ttcaaatccc gacttacgtt ttatcatctg caatgaagtg gatttcatga agtcatagat       180
     gccttcctca cagccaacac agacctataa ttatacaaac gcattacagt ccctgttccg       240
     atcaattcca cacgctcgat ggaatttcca gaaagctgat tggacgaagt tttctgagga       300
     acttgataag tgtgttcgct ggatccctcc gacacatgag aactaccaac gcttcattgg       360
     agcagtcaca gcaacagcta aaaagtgtat gccaagagga taccgaaaag aatatattcc       420
     aggatggaac gatgaaagtg aaacactgta tcaacagttc caggatgtgg ggaccccgac       480
     atagcaaatg aacttttatc cagcttggac ttgtctcgga gacaaaaatg gactgaaaca       540
     gtcgaaaaga tgaatttcac ccattcgagc agggaagcat ggatcttctg agaagattgg       600
     gaggaagtgg acctgtatgc agaaagctat ctgaagtgac accaaatcaa attgcttccc       660
     acatcattac tacgtcaaga gtaacacccg ataagaaata ccaggtatat tagacgtcag       720
     cttcgagatc tgaaaatgtc tgcatctcct tcatcagaat tckcaccgcc ccttcacagt       780
     tttagacatt gacacgggat tgaaggacct taagcctttt aaagctcccg gattcgatgg       840
     catctatcct gaattcctga tttacttggg aggatatgct aagaagtggt tggcagaatt       900
     cttcactgac gtcctactga ctggtcacct tccattggaa tttaagaagg caaagataat       960
     ttctattttg aaacctggta aacctagcgg caaggtcgaa agctatcgtc cgatagctct      1020
     tcttagctgc tgctacaagc tctttgaaac gtctataaca gaataaatag tgttatccta      1080
     gagcatgttc caatagacca agcaggcttc agaccagggc gtagctgctg agatcaagta      1140
     ttgtctatta catccttcat agaggcagga tatcaaatga acctgaaaac atctgtcaca      1200
     tttgtcgatc tcactgctgc cttcgacact gtatggaggg aaggcctgat ctacaaattt      1260
     cttcgaatca taccctgcag aacgatggca cgtcttgtca acaacatgtt aagtgaccgg      1320
     aaattccagg taatcattgg aagcaagata agcaaggaga ggaagcttac caacggatta      1380
     ccccaaggtt cagttctttc gccattactc tttaacttat atctatccga ccttcctgac      1440
     actttgtcta gaaaattctg ctacgctgac gatctggcca tagccgtaca acacaaagaa      1500
     ctggagaaga cagaagagat acttaccaaa gacttgtctt tattggagac ttatttcaga      1560
     atctggagac ttcaacccag tgcgaacaaa acagaggtgt cttgcttcca cttgaatcat      1620
     ttagcgaacg tgaagctgaa tgtaactttc agaggcagag ttcttcgcca caattggtac      1680
     ccaaaatatc taggtgtcat tctggaccga acactgacct tcaagcaaca ccttttaaac      1740
     ctagccgaga aactgaaaac tcgtaacaac atactgcata aattatgtgg aactacctgg      1800
     ggatcttcag caaccacctt gcgctcttca gccttgggtt tggtgtactc aagtgctgag      1860
     tattgtgcac ctgtatggat gaacagccac catacaaagc ttgttgacac ccaactgaat      1920
     gctaccatgc gcataatatc tggcgcaatc agatctactc cggtttactg gcttccgctg      1980
     ctaacaggta taatgccacc tgatttgcgc agatctgcgg ctcttatgag ggagttccaa      2040
     agaatctcca agaaacctaa tctacctgta catagggacc taccaattct aaatgttaac      2100
     agactacgct cacgtcatcc aactctgcgt gatgctgctg acatggttac tagagatttt      2160
     aaacctctcg aagaatggaa gtgtcggtgg caagcggcaa cagatgwgca cctgcagaac      2220
     atcttctcag gcgctaaact accaactgga tatcaactac cacgcaagac ctggacagca      2280
     ctgaatagaa ttagaacggg ccatggcagg tgtaacgatg cacttcataa atggaacaag      2340
     ctgtctaatc cagattgtga ctgcggagct ccacgccaga cgatacatca cattgtcaga      2400
     gactgtatgc ttcgagccta tggtggaaga gaagatgatt tcctgctggc aaccccagaa      2460
     gctgtgcgtt ggattcaagg actggacatc gagttataaa acttatgtta ccttgcaaag      2520
     ttcattgttt cctttctgta tatatgtata tatttgtatt gtgtgtatca gccattcgct      2580
     aaataaataa at                                                          2592
//
ID   Vingi-49_LMi repbase;    DNA;    INV; 3083 BP.
XX
AC   .
XX
DT   01-JUL-2014 (Rel. 20.01, Created)
DT   01-JUL-2014 (Rel. 20.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-49_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3083
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 15(1), 337-337 (2015).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1104..1163,1127..1399,1335..1622,1499..2146,
FT                 2086..2280,2264..3055)
FT                 /product="Vingi-49_LMi_1p"
FT                 /translation="MQAIAEDKRSRWCNLVENLEEITVVQSCREPRMKQNS
FT                 MEIIKKLEWDPTDHKQKNNGVTANQIASQLLKNGKTGGKKKGKELYPKNKK
FT                 MMASSIHIHSNRTGRRHSEYETEWPPQYTFTATELEDAIQSMKLNKAAGTD
FT                 DLRTEQIKHFGPKVRNWLLQMINACIKIPKLWRQARVVALLKPGKEIRILK
FT                 VTDQCHFYAISTRCWSGDPKTMAAGEGGGLTKTWQGDTDPKSYRPVSLLCH
FT                 LYKMLERMILNRVAQIIDGKIIKEQAGFRPGRSCCGQILNLTQHIEDGFER
FT                 KLITGAAFIDLTAAYDTVNHRKLLCKLYHLTGDCRLTMVIGSLLQNRRFYV
FT                 SLNGKNSRWRLQKNGLPQGSVLSPILYNVYTNDQPIPQDTRLFVYADDTAV
FT                 AVQGSSFDEVSQKHPVVLKNLLNTTMPITSIPKTSSGLEELAQYYDANHLK
FT                 PNPCKTQVCAFHLRNRDAGVDLDVTWQGKKLDTVQHLNTLGYTIPWGTLDR
FT                 TLSFKQHCRNTKAKVCSRNNIIRRLTNYEWGAQPSVLRTSALALCVSAAEY
FT                 AAPVWDASAHTKQVDVSVNETMRIVTGCLRPTPTGNMYLLAGIAPPRIRRQ
FT                 VAADAERTKKENDYRHPLNGHVTQARRLKSRNSFIARTKILDGSQEDNRVC
FT                 KWKNEQTGLPITPKEEMAPGNKLPYTVWRTLNRMRAGVPRCKTNLRRWGLL
FT                 TNDDDALCECGEVQDEAHLLTCRLLPEPCSFSDLLQANDKAVAVANYWKNK
FT                 T"
XX
SQ   Sequence 3083 BP; 1017 A; 648 C; 718 G; 700 T; 0 other;
     ggggtacgaa gaaggagcct cctagtagac tgtgaaccaa taagctgaag gacacagtcg        60
     ggcgtaccct ggaaacggtg aaaaacttca ccggctaatc cttctaacac cagatcaagt       120
     tagagccaaa aggaacatca aagatgcaac ggcctttatc aagaccaacc ctcgtgataa       180
     tctctataaa tattgaggga ttttctagtc ataagagtat tttattagca gacatatgca       240
     ataagcataa atgtgatgta ttattggtgc aggaaacaca tcgggaaacc accagccaca       300
     gacctaaaat tgcaggaatg gagttagtca tcgaaagacc tcatgacaag tacgggagtg       360
     cgattttcgt tagacctggg ctcaatgtaa tatcagctgc attgacagag ataaataaca       420
     ttgaagtact taccatccgg gcccagaagt tctctgtgac gactgtgtac aaaccaccag       480
     atatggactt tgttttcaat gaacctaaca attttacata tgaccatatt aattttgtaa       540
     tgggcgactt caactgccat agtgaagcgt ggggatacaa tgagactgat gaaaacggga       600
     tacagcttga atcctgggct gacagtaatg acctgcaact tattcatgac ccaaaactcc       660
     cagcatcgtt caatagcgga agatggagga ggggatataa tcctgacaac atctttgtga       720
     gtaggaagtt ggcaatgcag tgtgtgaagc ttgttgatca tcccatccca agtacccaac       780
     acagacccat tatttgtgtt gtgaatgcca tcgtgaagcc agatgaggtg ccctttcgaa       840
     ggcggtttaa tttcaaaaaa gcaaactggc aacaatttca agagcaattg gatgaagaga       900
     ttgagaaaat tcctcctcga ccagatgagt atggtagatt tatcgatctt tgaaagaggt       960
     ttcaaggaaa aatatcccaa gagttgccac acccgtacat ccaaggactg actggcagca      1020
     gtaaagcctt gcttgacagg taccagaagt tgttcaatca ggaccctttc agcgaagata      1080
     cgttggaggc tgcggaagac ctaatgcagg ctattgctga ggataagaga tcacggtggt      1140
     gcaatcttgt cgagaaccta gaatgaagca aaacagcatg gaaattatta aaaaacttga      1200
     gtgggaccca actgaccata aacagaagaa caatggagta acagcaaatc agatcgctag      1260
     ccaacttctg aagaatggga aaacaggagg gaaaaagaaa ggaaaagagc tataccccaa      1320
     gaacaaaaag atgatggcct cctcaataca cattcacagc aaccgaactg gaagacgcca      1380
     ttcagagtat gaaactgaat aaggccgctg gaactgatga ccttagaacg gagcagataa      1440
     aacattttgg gcccaaagtt cgaaactggt tattgcaaat gattaatgcc tgtattaaga      1500
     tcccaaaact atggcggcag gcgagggtgg tggccttact aaaacctggc aaggagatac      1560
     ggatcctaaa agttacagac cagtgtcact tctatgccat ctctacaaga tgctggagcg      1620
     gatgattctt aaccgtgtgg ctcaaataat tgatggaaag atcataaagg aacaagccgg      1680
     ttttagacca ggaagatctt gttgtgggca aatactcaat ttaacgcagc acatagaaga      1740
     tggctttgaa agaaaattaa taactggagc agctttcata gatcttactg ctgcgtatga      1800
     cacagtaaac cacagaaagt tattgtgcaa attgtatcat ctcacagggg actgtaggct      1860
     gacaatggtt attggtagcc ttctgcagaa tcgaagattt tatgtatctc taaatggcaa      1920
     gaacagcaga tggcgactgc agaagaatgg cttaccacaa ggaagtgtac tttctccgat      1980
     cttgtataat gtgtacacta atgaccaacc tatccctcaa gatacacgat tgttcgtata      2040
     tgctgatgac acagctgtgg ctgtccaggg atccagtttt gatgaagtat cccaaaaaca      2100
     tccagtggtc ttgaagaact tgctcaatac tacgatgcca atcacctaaa gccaaaccct      2160
     tgtaaaacac aagtatgtgc tttccatcta cgcaatagag atgctggagt tgatcttgac      2220
     gttacgtggc agggtaagaa gctagacact gtccaacacc taaatacctt ggggtacact      2280
     tgacagaacg ctctccttca aacaacattg ccgaaatacg aaggccaaag tttgctccag      2340
     aaataacatc atccgcaggc tgacaaacta tgaatgggga gctcaaccat cagtactgag      2400
     aacatcagca cttgctctat gtgtctcagc agcagaatat gcagcaccag tatgggatgc      2460
     atccgcccac actaaacagg ttgatgtaag tgtcaacgag actatgcgca ttgttacagg      2520
     ctgtctcaga cccacaccaa caggtaatat gtacctcctt gctggaattg ccccacccag      2580
     gataagaagg caggtggcag cagacgctga gagaacaaag aaagagaatg attaccgaca      2640
     cccattgaat gggcacgtca ctcaggctcg gaggctcaaa tctagaaaca gcttcatcgc      2700
     aagaactaag atccttgacg gttcgcagga agataacaga gtctgtaaat ggaagaatga      2760
     acaaaccgga ctgccaataa cgccaaaaga ggaaatggca cctggaaaca agcttcccta      2820
     tacagtttgg agaacactaa acaggatgag ggctggtgta cccagatgta aaactaatct      2880
     gcgcaggtgg ggcctgctga ctaacgatga cgatgctctt tgtgaatgcg gagaggttca      2940
     ggacgaggca catctgctta cgtgccgact attgccggag ccctgcagtt tcagtgacct      3000
     gctacaagcc aatgacaaag ccgtggcggt ggctaactat tggaaaaaca aaacttgatc      3060
     tggacacgga aatgaatgaa tga                                              3083
//
ID   Vingi-4_LMi repbase;    DNA;    INV; 3234 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-4_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3234
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3498-3498 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           300..3056
FT                 /product="Vingi-4_LMi_1p"
FT                 /translation="MRLVNEIAHEKHGSAIFVRQGLQVSGSRTIQHNNIEL
FT                 IGVELDNTEIISIYKPPAQTFNLNIPLLSHTRDNMHTVVLGDFNCHSTQWG
FT                 YSETNEDGHLLEQWAENNQMCLIHDPKQPPSFNSGRWRKGYNPDLIFVSKD
FT                 LSALSYKQVLNAIPRSQHRPIKLEIRPVVQPVEIPFRRRFNFKRAKWEDFG
FT                 NKLDESLKLIEPKPEHYDKFVQAIKDASFKTIPRGCRTEYIPGFTDKNKDA
FT                 YERYCDLYDKSPLAEETIECGEELLEALSDQRRQTWMKTVVGMDMTHSSRK
FT                 AWRLIKKLSNDPTIRTPHVNITPNQIASQLLLNGKVNGKNNAARSSLKVKK
FT                 SKESNVSDVDFSVEELEEAISSLKVGKAAGLDDIRNEIIKNLSENXKKWLL
FT                 KFFNCIWRTAKIPRIWRHAKVIAVLKPGKDPNDPKSYRPISLLCSLLKLFE
FT                 RLIMNRIGDYIDSCLIDEQAGFRPGKSCTAQALNLTQFIEDGFERGLPTGV
FT                 VFIDLTAAYDTVNLRTLISKVHRMTNSDRLAEVLRALLFNRRFFVDFQQKR
FT                 SRWRNQKNGLPQGSVLSPLLFNIYTNDQPIGKKTKSFIYADDRAIACQAKT
FT                 SNEIEAILTEDLTTLTEYYRRNHLKPNPSKTQVCLFHLNNREAGKVLDIIW
FT                 NDVRLNNCSHPTYLGITLDRTLTYKKHIEKTKAKVQTRNGILNKLTSAKWG
FT                 ANAKVLRSTALATCFSVAEYGCPVWERSHHTKKLDVVLNNTCRKITGCLKP
FT                 TRVDYLYSLSGIAPPNIRRSFLSSIERNKQTNDHRHLLYKNQPVPKRLQSR
FT                 RSFMYSVEPTVASIKSLWQEQYPEALITEEALPQGSHLDWQHWKTLNRLRV
FT                 GVGRSKQLMKRWGYTDSDECECGAIQTMEHLLKCPLVDASRECTQEDLLKY
FT                 TGTAAAYTDFWTSKI"
XX
SQ   Sequence 3234 BP; 1084 A; 687 C; 681 G; 781 T; 1 other;
     gggggtcaca gcagaagcgt tcccgttcgc gacccctgtc gagtctgata ccagtctggt        60
     atcagtccgc gaattctgct acaagacgag ctacatcgga tcaatatgcc gaaacaaaaa       120
     gatagccaaa agagtggact cgttttagag cccacctgac aattatttcg ctaacatcga       180
     aggaatttca gtatccaaac aagatttaat tgcagaaatc tgcagaacca acagctgcga       240
     cgtcctgtgc ctacaggaga cccacagggg cctctcaaaa taagccaaac attgtaggta       300
     tgcgactggt aaatgagata gcacatgaaa agcatggaag tgccattttt gtgagacaag       360
     ggttgcaagt atcaggaagt cgtaccatcc aacataataa tattgaactt ataggtgtag       420
     aattggataa taccgaaata atctctatat acaaaccccc agcccaaacg ttcaacctta       480
     atattcctct gctgtcacac acaagagaca atatgcacac agttgtttta ggggatttta       540
     actgtcacag cacacagtgg ggctacagtg aaactaatga agatggtcac ctacttgagc       600
     aatgggcaga gaacaaccag atgtgtttga tacatgatcc caagcaacca ccatcattta       660
     acagtgggcg atggagaaag ggttacaatc ctgatctgat ttttgtaagc aaagatctct       720
     ccgctttaag ttacaaacaa gttctgaatg ctattccgag atcacaacac agaccaatta       780
     aactggaaat aagacctgtt gtccagcctg tggaaatacc attcagaaga agattcaact       840
     tcaaaagagc aaaatgggag gatttcggga ataaacttga cgaatccctg aaactgattg       900
     aacccaagcc agagcactat gacaaattcg tgcaagctat taaggacgcc tcttttaaga       960
     caataccgag gggatgtagg acagagtata tacctggttt tacagacaaa aataaggatg      1020
     catacgaaag gtattgtgat ctctacgata aaagtcccct agctgaagaa acaatcgagt      1080
     gtggggagga attactagaa gctctaagtg accaaagacg ccagacctgg atgaagacag      1140
     tcgtgggcat ggacatgaca catagtagta ggaaagcatg gcggcttatt aaaaaactgt      1200
     caaacgatcc cactataaga actccgcatg taaatataac acctaaccaa atagccagcc      1260
     agcttttatt aaatggcaaa gtcaatggaa aaaataatgc agctaggtct agcctaaaag      1320
     taaagaagtc aaaggaaagt aatgtatcag atgtagattt ctctgtggaa gaactagaag      1380
     aggccataag cagtctgaaa gtaggaaaag ctgcgggact tgatgacatc aggaatgaaa      1440
     taattaaaaa tctgtccgaa aatkccaaaa agtggttact gaaatttttc aattgcatct      1500
     ggaggactgc aaaaattccc agaatatgga gacacgcaaa ggtcatcgca gttcttaagc      1560
     ctgggaagga cccaaatgac cccaagagct atcgaccaat atcgttgctg tgttcgctcc      1620
     tgaaactttt tgaaagattg attatgaaca gaataggtga ttacattgac agctgcctaa      1680
     ttgatgaaca ggcaggtttt cgcccaggga aatcttgcac agcccaggct ttaaacctga      1740
     ctcaatttat tgaagacgga tttgagagag gtcttccgac aggagtagtg ttcattgacc      1800
     taactgcagc ttacgacact gtaaacctga gaaccctcat ctccaaagta catcgaatga      1860
     ccaacagtga caggttggcg gaagttctta gggcactgct ctttaataga agattcttcg      1920
     ttgatttcca acagaagaga agtagatgga gaaatcagaa gaatggtttg ccacaaggca      1980
     gtgtgctgtc gccactgctg tttaacatat ataccaatga ccaacctatt ggaaaaaaga      2040
     ccaaatcttt tatttacgca gatgacaggg caattgcatg ccaagcaaaa acttctaatg      2100
     aaattgaagc aatcctcact gaagacctca caacgctcac agagtactac agacgtaatc      2160
     acctgaaacc aaacccaagt aagacccaag tctgtctctt ccacctcaac aaccgggaag      2220
     caggaaaggt gctcgatatc atctggaatg atgtacgttt gaataattgt tctcatccta      2280
     cctatttggg catcactctt gacagaaccc tgacatataa gaaacatatt gaaaaaacaa      2340
     aagctaaggt acaaacacgt aatggcatac tgaacaaact gacatctgca aagtggggtg      2400
     ccaacgcaaa agtacttcgt tcaacagccc tagccacatg cttttcggtc gctgaatatg      2460
     gatgcccagt ttgggaaaga tctcaccaca ctaaaaaact agatgtggtc ctaaacaaca      2520
     cctgcaggaa gataactggc tgcctgaaac ctactagagt ggactactta tattccttat      2580
     cgggtatcgc tccaccaaat attagaagat ctttcctgag ctcgatagaa aggaataaac      2640
     aaacgaacga ccatcgtcac ctgctgtaca aaaaccaacc tgtgcccaaa aggctacaat      2700
     ctagacgaag cttcatgtac tcagtggaac caaccgtagc ttccataaaa tcactgtggc      2760
     aagaacaata tcctgaagcc cttatcacag aggaagcctt accccagggc tcccacctag      2820
     actggcaaca ctggaaaacg ctgaacagac ttcgtgtggg cgtggggcgg tcaaaacaac      2880
     ttatgaaaag gtggggctac acagacagtg acgagtgtga gtgtggtgca atacagacga      2940
     tggaacacct tctaaaatgc cctttagtgg acgcatctag agagtgcact caagaggacc      3000
     tcctgaaata cactgggaca gccgcagctt acactgattt ctggacgagc aaaatatgat      3060
     tcaattgtac tatatgttgt atttgtctat ctctgttttt atagttttaa atctgtactt      3120
     tatattttat ctctgtattt gactactgct ttctgtaaaa gcacttactt tgtagtttaa      3180
     attatgtgct ggcttctttc agttacattt gtgatgtagt tcgtacacga ataa            3234
//
ID   Vingi-5_LMi repbase;    DNA;    INV; 3157 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-5_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3157
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3499-3499 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           134..3073
FT                 /product="Vingi-5_LMi_1p"
FT                 /translation="MTSQHRTFSGPIMTIISVNIEGLSLCKEELIKDLCKK
FT                 NKCDVLCIQETHRDSILNRPKIQGMRLVAERPHRQYGSAVFVKSEIQVLST
FT                 SVSDINDVEIVTVELKNCTITSVYKPPLSNFNVNATHKHNSTKVNFVIGDF
FT                 NSHSTRWGYPQDDENGMAVISWAESNKLALIHDHKLPPSFNSGRWQRGYNP
FT                 DLIFATESVSQQCIKTVCPPIPKTQHRPIMCQVMTAVRPVCVPFRRRYNFR
FT                 KANWLKYQEILDREVAFLPPNPDSYDKFTDAVKRSSRLSIPRGCKTEYVQG
FT                 LTPETVADLHTYTELFEKDPFDESTVAAGQQLLASISEAKRNSWVNLMEEL
FT                 NMSINSHKAWRLLKRLSNDPTSLNNHANITADNIATQLLKNGKPENRSRRQ
FT                 TKNMSNTTEDETNSLSQPISIDELNEAIAKCKNGKAAGLDDILVEQIKHFG
FT                 PQTKQWMLNMFNKCMADCKIPSIWRKSKVIAILKPGKDINDPKSYRPISLL
FT                 CHMYKIFERILQTRLTYVIEPKLIPQQGGFRPERNCTSQILGLTQFIEDGF
FT                 QKKRVTGAVFIDLTAAYDTVNTRQLIEKLYEITRDRKFTDIIRNLLQNRRF
FT                 FVEFQGKRSRWRNLTNGLPQGSVLAPSLFNVYTNDQPLPVNTSSYIYADDR
FT                 VIAAQGQSFEDVEKSLNEALVELDSYYCRNQLKPNPMKTQTCAFHLRNKQA
FT                 SRQLQVRWRGVDLEHCKNPKYLGVTLDRALTFKQHCLNTKLKVCGRNNILR
FT                 RLTGSTWGARPKVVRTSALSLAYAAGEYASPVWCRSAHAKQVDVALNESAR
FT                 IVTGCLQPTPVNKIYHLAGIAPPAIRREQAAYKERQKSIVSKWHPLHGMEP
FT                 AAQRLKSRNSFLTSTEKESDYRTTVERWKDAERHPWMEPSEALAAGHNESW
FT                 TTWKSLNRLRSGIARSKVNLSKWGYQNDSTLCDCGAIQTTTHMYNCPLSPS
FT                 HCTFEELMSAQPNAIDVALFWAKNV"
XX
SQ   Sequence 3157 BP; 1032 A; 717 C; 658 G; 750 T; 0 other;
     gggggacttg aaaggagcct cccagcagaa tgtgctgtta agctagcatc acattcgggc        60
     gtcccctggg caacggtttt ttcttgccgg ccaatccttt caaatccaga gacatcaagg       120
     catagctagt gtaatgacta gtcaacatag gaccttttca ggtccaatca tgactattat       180
     ctctgtcaat atcgagggct tgtccttatg caaagaggaa ctgataaaag acctatgtaa       240
     gaaaaataaa tgtgatgtcc tctgtatcca agaaactcac agagatagta tccttaatcg       300
     cccaaaaatc caaggcatgc gtttggtggc tgagaggcct catcgtcaat atggcagtgc       360
     tgtttttgtg aagtctgaaa ttcaggtact gtcgaccagc gtatctgaca taaatgacgt       420
     agagatcgtc acagttgaac ttaaaaactg taccataaca tctgtgtaca aaccaccact       480
     aagtaacttc aacgtcaatg caactcataa gcataatagt acaaaagtaa attttgtaat       540
     tggcgacttc aatagccaca gcactagatg gggataccct caagatgacg agaatgggat       600
     ggcagttatc agctgggcag agtccaacaa gctagcttta attcacgatc ataaactccc       660
     accctctttt aatagtggca gatggcaaag gggatataac cctgatctaa tttttgctac       720
     agaatctgta agtcagcaat gcataaaaac agtatgccca cctataccaa aaacccaaca       780
     ccgacctata atgtgccaag ttatgactgc tgtgagacca gtttgcgtac cattccgccg       840
     aaggtacaat ttcaggaagg ccaactggct aaaataccag gaaatcttgg atcgcgaggt       900
     agcattctta cctcctaatc ctgactcata tgataagttc acagatgccg tgaaaagaag       960
     ctcaagactg tctatacctc ggggctgtaa aactgagtac gttcaaggcc taacacctga      1020
     aacagtggcc gacctacaca cgtatacaga attgtttgaa aaagatccat tcgatgaatc      1080
     aacagtggct gcagggcaac aattgttagc ttctatctca gaagctaaaa gaaatagttg      1140
     ggttaatcta atggaagagc taaatatgag cataaacagc cataaagcat ggcgccttct      1200
     taagcgctta agcaatgacc caacttccct gaacaaccat gccaacatta cagcggataa      1260
     catagccact caattactaa aaaatggaaa accagaaaac agatctcgta gacaaaccaa      1320
     gaatatgagc aataccacgg aggatgaaac aaactcactg tcacagccca tctcaataga      1380
     tgagctaaat gaagccattg caaaatgtaa gaacgggaag gctgccggac tagatgatat      1440
     tctagtagaa cagatcaaac attttggccc acagaccaaa cagtggatgc taaatatgtt      1500
     taataaatgc atggctgact gtaagattcc aagtatatgg aggaaatcta aagtcatagc      1560
     aatccttaaa cctggaaagg acatcaacga tcccaaaagc taccgaccta tatcacttct      1620
     ctgccacatg tacaagattt ttgaaagaat tttacaaact cgactcacat atgtgataga      1680
     gcccaaactc ataccacaac aagggggttt ccgtcctgaa agaaattgca cctcacaaat      1740
     attaggccta acacagttta ttgaagatgg gtttcagaag aaaagggtta ccggagctgt      1800
     ttttattgat ttgactgctg cctacgacac tgtcaacact cgacaactaa ttgaaaaact      1860
     gtacgagatc actagagatc gaaaatttac tgatataatt agaaatctac ttcagaatcg      1920
     tcgattcttt gtagagtttc agggaaaacg tagtcgatgg cggaacctga ccaatggcct      1980
     acctcaggga agtgtactgg ctccatccct tttcaacgtg tacacaaacg accagccact      2040
     tcctgtcaac accagcagtt acatatatgc tgacgaccga gtcatagctg ctcagggaca      2100
     gtcgtttgag gatgtggaga agagtctgaa tgaggcactg gtggagcttg actcatatta      2160
     ctgccgtaat caactgaaac ccaacccaat gaaaacccag acatgtgcat tccatctgcg      2220
     caacaaacag gcatctcgtc agctgcaagt gaggtggagg ggtgttgact tggaacactg      2280
     caaaaaccct aaatacttgg gcgttacttt agaccgagct ctgacattta aacaacattg      2340
     ccttaatacc aaactgaaag tttgtggtcg aaacaacatt ctgagacgac tgacgggttc      2400
     gacctggggc gcaagaccaa aggttgtaag aacgtcagcc ctatctctag cctacgccgc      2460
     tggcgaatac gctagcccag tttggtgcag gtcagcacac gccaaacaag tcgacgtcgc      2520
     cctcaatgaa tctgccagaa tagttacagg atgtttgcag ccaacccctg taaataaaat      2580
     ctatcatctt gccggtattg cacctccagc aattcgaaga gaacaagcag catataaaga      2640
     gagacaaaaa tctatagtct ccaagtggca cccactccat gggatggagc cagcagcaca      2700
     gaggcttaaa tctagaaaca gttttctcac atcaactgag aaggagagtg actacagaac      2760
     aacggtagaa cgctggaagg atgcggaaag acacccgtgg atggaaccct ccgaagcctt      2820
     agctgctgga cacaacgaaa gctggacaac gtggaagtct ttgaaccgat tacgcagtgg      2880
     catagcaagg tctaaagtaa acctaagcaa atggggctat caaaatgatt ccaccctctg      2940
     tgactgtgga gccattcaaa caactaccca tatgtataac tgcccgctca gtccctcaca      3000
     ctgtaccttt gaggagttaa tgtcggcaca accaaacgct attgacgtag ccctcttctg      3060
     ggctaagaat gtgtagaaac ctttctttac atctgcataa tttttctttt taaattaata      3120
     tgtaggtatt ttatgatgtc tctgacacga ataagaa                               3157
//
ID   Vingi-6_LMi repbase;    DNA;    INV; 3197 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-6_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3197
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3500-3500 (2014).
XX
DR   [1] (Consensus)
XX
CC   >93% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(268..339,321..527,506..1150,1117..2196,
FT                 2112..3032)
FT                 /product="Vingi-6_LMi_1p"
FT                 /translation="MKLIAERPHAKYGSAVFRLSQTCKAKPNLQIRTTNQT
FT                 EVNDVEIITVEFDHYTVTSVYKPPSVDFSFNPPQNFTDLKPAFVVGDFNSX
FT                 STVWGQXQHCLGLKQDDGNGEGVLAWAESCHLALIHDSKLPPSYNSGRWRQ
FT                 GYDPDLLFISESIAHQCSKSIGNPIPNTQHRPIICSMLAAVRPQHIKFKRR
FT                 YNFKKANWSKFTELLEERVQAISPVPEEYESFVDLIKLCSRASIPRGCRTN
FT                 YIQGLSSATAALLDEYYTLYNRNPFAEETLAKARCLISSISETKRDQWIKL
FT                 MEEIDMKKAAKRPGDYYEKSSQKAWRLLSRLNSDPTKTTMFSNVTSNQIAH
FT                 QXLQNGKPSSKSTSKEKIVRDVAQETQTLSKPFALAELNNAISKCKNGKAA
FT                 GLDDICVEQIKHFGPRTRRWLVEMMNSCMTGCKIPKIWRKSKVIAILKPGK
FT                 TPNDPKNYRPISLLCHLFKIFERMILHRLSDTVDPLLIPQQAGFRPGKSCT
FT                 AQVLRLTQHIEDGFENKLITGAVFIDLSAAYDTVNHRRLLTKLYDICKDYN
FT                 LTCMIGNLLQNRRFFVEFQGQKSRWRNQKQGLPQGSVLAPMLFNIYTNDQP
FT                 LPRDTQNFIYADDRAITAQADNFESVEEKLSRALEELTAYYRKNQLKPNPS
FT                 KTQTCAFHLKNKEASRPYREKPTQTQSFKNSNLCFPSKEQGGVKALQINWE
FT                 GISLKHNATPKYLGVTLDRTLTYKEHCMNTKCKVAARNNIVRKLAGSNWGA
FT                 QPNTLRTTALSLCCSAAEYACPVWYNSCHAKQVDVALNETCRIVTGCLRPT
FT                 PVEKLYCLAGIAPPGIRREVTARMERAKASKSSTHPLFGYQPAHSRLKSRK
FT                 SFLRATTELDKSPQLTRLEMWRAKXGDLGGWMTPQEALPPGYEEDWMTWKS
FT                 LNRLRTNVARSKVNMRRWGLSDASVMCECGKEQTTEHLLQCELCPACCTMQ
FT                 DLTGATRDACDVARFWASIV"
XX
SQ   Sequence 3197 BP; 1025 A; 776 C; 681 G; 710 T; 5 other;
     gggggacaag agagaagcct ccacgaagaa cgttacctgc acgttcgggc gttcccctct        60
     caccccagaa gcatcctagt aaaatgacac gtaatactac gaaacggttc ttatcggaac       120
     caaccgtgac gattatctct ttgaacatag gtcctcgcaa gcaaagaaca actcctgcac       180
     gaattatgcc gagttaacaa ctgtgacgta ctgtgtattc aagagacaca cagagacgcg       240
     caccatcggc gtcccaaagt tccagggatg aaactaatag cagaaagacc ccacgcaaaa       300
     tatggaagtg cagtttttag gctaagccaa acctgcaaat aagaacaaca aaccaaacag       360
     aggtgaatga tgttgaaatc ataacagtgg agttcgatca ttacacagtg acctcagtct       420
     ataaaccacc aagtgtggac ttttccttca accctccaca aaacttcacc gatttaaaac       480
     ctgctttcgt tgtcggtgat tttaacagtm acagcactgt ctggggttaa agcaggacga       540
     cgggaatgga gaaggtgtac ttgcatgggc cgaatcatgt caccttgcat taatccacga       600
     cagtaaactt cctccctcct acaacagtgg aagatggcgc caaggatatg accctgatct       660
     cctcttcatc agcgaaagca tagcacacca atgctctaaa tccattggca acccaatccc       720
     aaacactcag catcgcccaa taatatgtag catgttagct gcagtaaggc ctcaacacat       780
     taaatttaaa aggcgataca acttcaagaa ggcaaactgg tccaaattta ccgaacttct       840
     ggaagagagg gtccaagcta tcagtccagt cccagaagaa tatgaaagct tcgttgatct       900
     catcaaactc tgttcgcgtg cgtcaatccc tagaggatgc agaacaaatt acatacaggg       960
     kctcagttct gcaacagctg ctcttctgga tgaatactat actttgtata acagaaatcc      1020
     tttcgcggaa gaaaccctcg ctaaagcaag atgtttaata tcctcaataa gcgaaacaaa      1080
     aagggaccaa tggataaagt tgatggaaga aattgatatg aaaaaagcag ccaaaaggcc      1140
     tggagattac taagtcgtct gaacagcgac cccactaaga caactatgtt ctckaatgtc      1200
     acttcaaacc aaatagcgca tcagmtcctt caaaacggca agccctcaag caagagtacc      1260
     tctaaagaaa aaatagtacg tgacgttgca caggaaactc agaccctctc caagcctttt      1320
     gccctggcgg agctaaataa cgctatcagc aaatgtaaaa acggcaaggc tgctggtctt      1380
     gatgacattt gtgttgaaca aataaaacat tttggcccaa ggaccagaag gtggctagtt      1440
     gaaatgatga acagctgtat gacgggatgt aaaatcccaa aaatatggag aaagtccaaa      1500
     gtcatagcca tcttgaaacc gggcaaaaca ccaaatgacc ctaagaatta tagaccgatc      1560
     tctctgctgt gccacctgtt taagattttc gaaagaatga tactccacag gctctccgac      1620
     acagtcgacc cgcttctaat cccgcaacaa gctggcttcc gaccagggaa gagctgcaca      1680
     gcacaagtgc tgagactgac gcaacatatt gaagatggtt ttgagaacaa actgataacg      1740
     ggagcagtct tcatagacct atcagcagcc tacgacacag tcaatcaccg gcgactgcta      1800
     accaaactat atgacatatg caaggactac aacctaacat gtatgatagg caatcttctc      1860
     caaaaccgga gatttttcgt ggagttccag gggcagaaaa gccgatggag aaatcaaaaa      1920
     caaggtcttc cacagggtag cgttctggcc cctatgctct tcaatatata caccaatgac      1980
     cagccccttc ctcgagatac ccagaacttc atatatgcag acgaccgtgc tatcaccgcc      2040
     caagcagaca attttgagag tgtagaagaa aagctatcac gagccctcga agagctcaca      2100
     gcatattata ggaaaaacca actcaaaccc aatccttcaa aaactcaaac ctgtgctttc      2160
     catctaaaga acaaggaggc gtcaaggccc tacagataaa ctgggaaggt atttcactaa      2220
     aacacaacgc cacccctaaa tatctgggtg tgactcttga ccgaacgctt acctacaaag      2280
     agcactgcat gaacaccaaa tgcaaagtag ctgctagaaa taatattgtt cgcaagctcg      2340
     caggctcaaa ctggggtgca caacccaata cattaagaac cacagccctg tccctgtgtt      2400
     gctcagctgc agaatacgcg tgcccagtat ggtacaactc atgccacgct aaacaagtgg      2460
     atgtggctct aaacgaaacc tgccgcattg tcacgggatg tctaaggcca acgccagttg      2520
     aaaaactata ctgcctggct ggtatagcgc cgcctgggat tagaagggaa gtcacagcca      2580
     gaatggaacg agcaaaggca tcgaaatcat caacacatcc cctttttggt tatcagccag      2640
     cccatagcag actcaaatca aggaaaagct ttctgcgtgc aacgacggag ctcgacaaat      2700
     caccacaact gaccaggctg gagatgtgga gagcaaagak cggggacctt ggtggctgga      2760
     tgaccccaca ggaagcgctc ccacctggct acgaggagga ctggatgacg tggaagtccc      2820
     tcaatagact gcggaccaac gtagcaagat ccaaagtcaa catgagaagg tggggcctct      2880
     ctgatgcatc tgtcatgtgc gagtgtggaa aagaacaaac caccgagcat ctgctacagt      2940
     gtgagctttg tccagcctgc tgtaccatgc aggacctgac tggtgctacc cgtgatgcgt      3000
     gtgatgtagc cagattttgg gctagcatag tttaatgttt aatcctgggg aaaagacctt      3060
     tgaactgtta ccactgttac ttgtaaatat gtgtactatt aatggctaat ttgtatttat      3120
     attcattgat cttcattttt gtttttgtgt ttcatgttat gttttgtaca agatgcttct      3180
     gacacgaata aataaaa                                                     3197
//
ID   Vingi-7_LMi repbase;    DNA;    INV; 3105 BP.
XX
AC   .
XX
DT   03-APR-2014 (Rel. 19.12, Created)
DT   03-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-7_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3105
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3501-3501 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(91..534,417..785,679..3078)
FT                 /product="Vingi-7_LMi_1p"
FT                 /translation="MLRSALTADPFTTGLHSNGQHSDRSFSRPFVFISINV
FT                 EGFSREKEVLVANLCQKYSCDIXLVQETHGGSTKNRPRIAGMELILERPHD
FT                 KYGSAIFARPDVNITSASLTEDNNIELLTVQTPFFCVTSVYKPPVPILASK
FT                 HQPTSTIRTRQQHRTPHSANSVFLCYISLQTTCANFSIKTPANFNDQDVNF
FT                 VIGDFNCRSTSWGYPDSDTNGTSLETWAEAHDLHLIHDPSSHLHLTVAGGK
FT                 EGTTQTTFCFFKGSCTMYEDCRRAHPSYATQWQVEKRVQPRQHFVSSKVAA
FT                 QCTKTVGEPIPRTQHRPVICTVNPVVVPEEVPFKRRFNFKKANWQKFSEEL
FT                 DSKVINIPPQPEMYETFIKCVQQVSRKTIPRGCRTQYVPGMSSDDKLLLET
FT                 YQTLYEEDPFAKETIQAGEILLETISATRKAKWSNLVENLDMXLNSRQAWK
FT                 LLKNLSGDPVKSQDNFTSMTPDKVATQLLQNGKIKGRTPKEALQRVPETEH
FT                 HFLRDPFSMAELEAAISSLKMHKAPGVDDLRVEQIKNFXCKTMEWLLSLMN
FT                 KCVAKLHIPKMWRKSRVIAILKPGKEPTDPKNFRPISLLCHTFKILERLVL
FT                 NRISATLEXKFIPQQAGFRAGKSCSSQILNLTQHIEDGFERGEISGVAFVD
FT                 LTAAYDTVNHRKLLRKVYDLTKDYQLTSVISTFLQNRRFQVSLQGKRSRWR
FT                 TXKNGLPQGSVLAPALYNIYTNDQPIPANTRLFIYADDTAVAVQGPTFKEV
FT                 EKKLSLAMDELSKYYDANHLKPNPSKTQVSAFHLRNREAEHKLDITWRGEQ
FT                 LKHCPTPVYLGVTLDRALTYRQQCLNVKQKVSARNGILKKLVGSSWGANPH
FT                 LLRTSAFALCISAAEYAAPVWDASAHAKQVDIAVNDTARIISGCLKPTPVQ
FT                 KLYPIVGIAPPNIRRAIAADYERTKQETDHRHPLYGHQAARHRLKSRKSFL
FT                 ARTAPLEGAPEANRLATWKSSLPADVSPKEEIAPGANLQYPVWRSLNRLRV
FT                 GVPRCKSNLKKWGILPASADTSCDCGADEDASHLLVCPLLDNTCTAQDVHE
FT                 GNDKAIAAAIFWKC"
XX
SQ   Sequence 3105 BP; 978 A; 766 C; 690 G; 664 T; 7 other;
     ggggtacatg aaaggaacct ccamgaagat tgcaataata gaagaacaag aaatgaacag        60
     caatcgggtg tacctgggca acgtcagaag atgctacgaa gcgcgctgac ggcagatcct       120
     ttcacaaccg gcctccattc aaatggacag cattccgaca ggtctttctc aagaccattt       180
     gtttttattt ccattaacgt cgagggattt tctcgagaga aagaagtttt agtagcaaac       240
     ttatgccaga aatattcatg cgacattmtg ttagtccagg aaacacacgg gggaagtacc       300
     aaaaaccgtc caagaattgc tggtatggaa ttaatactgg aaaggcctca cgataaatac       360
     ggcagcgcca tttttgccag acctgatgtg aatatcacat cagcctcact gactgaagac       420
     aacaacatcg aactcctcac agtgcaaact ccgtttttct gtgttacatc agtctacaaa       480
     ccacctgtgc caattttagc atcaaaacac cagccaactt caacgatcag gacgtgaact       540
     ttgtcatagg cgatttcaac tgcaggagca catcatgggg atatccagat tccgacacaa       600
     atggaacgag tctagaaaca tgggctgagg ctcacgacct acatctgatc catgatccaa       660
     gctcccacct tcatttaaca gtggcaggtg gaaaagaggg tacaacccag acaacatttt       720
     gtttcttcaa aggtagctgc acaatgtacg aagactgtag gagagcccat ccctcgtacg       780
     caacatagac ctgtcatatg cactgtgaat cctgtagtag tgcctgaaga ggtaccattc       840
     aagaggagat ttaacttcaa gaaggccaac tggcagaagt tcagtgaaga gcttgactca       900
     aaagtaataa acattccacc acaacctgaa atgtacgaaa ccttcatcaa atgcgtccaa       960
     caagtttcga ggaaaactat cccgagagga tgcagaaccc agtatgtccc aggcatgtcc      1020
     agcgacgaca aactactctt agaaacatac caaactctct atgaagagga tccatttgca      1080
     aaagaaacga tccaagctgg tgaaatattg ctggaaacca tttcagcaac wcgcaaggcc      1140
     aagtggagta atttggtaga gaacctggat atgaakctga acagcagaca agcctggaaa      1200
     ctgcttaaaa acctgagtgg tgaccctgta aaatcccaag acaattttac gagtatgact      1260
     cctgataaag tggcaaccca gctcctgcag aacggtaaaa taaaaggaag gacgcccaaa      1320
     gaagctcttc agcgcgtccc agaaacagaa catcattttc ttagggatcc cttctccatg      1380
     gctgaactcg aagctgccat ctcgagcctg aagatgcata aggctccagg tgtcgatgac      1440
     cttagagtcg aacagattaa gaacttcgkc tgtaaaacga tggagtggct actaagccta      1500
     atgaacaaat gtgtcgccaa gttacacatc cccaaaatgt ggcggaagtc tcgagtcatt      1560
     gcaatactta agcctgggaa ggaaccaact gatccgaaaa actttcgacc tatctccctt      1620
     ttatgccaca ccttcaagat attagaacgg ctggtactta accgaatcag tgccaccctc      1680
     gaagakaagt ttatcccgca acaagcaggc tttcgtgctg gcaaatcatg ctctagtcag      1740
     atcttgaatc taacccagca catagaggac ggttttgagc gtggtgagat ttctggagtc      1800
     gcttttgttg atctaacagc tgcatacgac accgtgaacc acaggaaact gttaaggaaa      1860
     gtgtatgacc ttactaagga ctaccaacta acttccgtta ttagcacctt cctccagaac      1920
     agaagattcc aagtttcatt acagggtaaa agaagcagat ggcgaacgca kaagaatggt      1980
     ctcccccaag gcagtgtgct tgccccagca ctgtacaaca tctacacaaa tgatcagcca      2040
     ataccagcaa atactaggct cttcatctat gccgatgaca cagcagtagc tgttcaggga      2100
     ccaaccttta aagaagtaga gaagaaactg tctctagcaa tggacgaact ctccaagtat      2160
     tatgatgcca accacttgaa gcccaatccc agtaaaactc aagtgagcgc cttccactta      2220
     cgaaacagag aagcggagca caaactggac atcacatggc gaggagaaca actgaaacat      2280
     tgcccaacac cagtctacct aggtgtcact ctggacaggg ctctaacgta caggcagcaa      2340
     tgtctgaacg tgaaacaaaa agtcagtgct cgtaatggga tacttaagaa gctggttggc      2400
     agcagctggg gagccaaccc gcacctccta aggacttctg catttgcgct ttgtatatca      2460
     gccgctgaat atgctgctcc tgtgtgggac gcttcagcgc acgctaagca agttgatatt      2520
     gcggtcaatg atacagcaag gatcatttca ggatgcttga agccaacacc agtgcagaaa      2580
     ttgtatccaa ttgttggaat agccccaccc aatatccgga gggccattgc tgcagactat      2640
     gaaagaacaa agcaggagac tgaccacaga catcctctgt atggtcacca ggcagcaaga      2700
     caccgcctta aatcccgcaa gagtttcctt gctaggactg cgccactaga gggagcacca      2760
     gaggcaaatc gtctcgcaac atggaagagc tcactgcccg cagacgtatc gccgaaagaa      2820
     gaaatagctc ctggcgcaaa cctacaatac cctgtgtgga ggtccctcaa ccgcctaaga      2880
     gtgggcgtcc cccgatgcaa gagcaacctg aagaaatggg gaatccttcc agcgagcgca      2940
     gacacctctt gcgactgtgg ggctgatgaa gatgcaagcc acctacttgt atgccccctc      3000
     ctggacaaca catgtacagc acaagatgtt cacgaaggaa atgacaaagc tatcgcagct      3060
     gctatttttt ggaaatgctg accgaccgga cacggaaatg aatga                      3105
//
ID   Vingi-8_LMi repbase;    DNA;    INV; 3087 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-8_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-3087
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3502-3502 (2014).
XX
DR   [1] (Consensus)
XX
CC   >90% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(203..829,774..2054,2058..2189,2179..2286,
FT                 2235..3047)
FT                 /product="Vingi-8_LMi_1p"
FT                 /translation="MITVNIEGITRNKQDILAQLCKTSNCDILCIQETHRG
FT                 KFAQSPQIPGMRLLAEIPSQKHGSAVFAKSNIVIKSVGTMNHKGIEIVTTE
FT                 VGECTVTSVYKPPGADFEFTPPDNFWSKRTKFVIGDFNSHSTLWGYEKTDK
FT                 NGEAVEQWAERSGITLIHDPKLPFSFNSKIWKRGYNTIFVSQHLTSNITVL
FT                 RWCMVRSQELNTGRRNQCIDGAWSDPKNSTPAVGISVYSALKTPTIPFKRR
FT                 FNFKKARWADFTNQIDKEIVKIEPIPENYERFVELIKTISRKCIPRGCRQQ
FT                 YLPGMTGELRSSMEKYKRLYEDDPFSEATIECGTTLLEAIGEARKVKWLET
FT                 LEKMDMTHSSKLAWNTIKKLCGDPIEHKKHGNVTPDQVAHQLLLNGKPEKK
FT                 CSRSKLVRNVQNESNSLSAFKMSELNMAINSMKNGKSPGVDDICTEQIKHL
FT                 GPITKQWLLSLLNTCVRSYKIPKMWRKAKVVALLKPGKDPDLPCSYRPISL
FT                 LCHLFKIYERMILQRIQNIVDSKLMTEQAGFRPGKSCTSQVLNLTEFIEQG
FT                 FERKNVTGLALVDLTAAYDTINHSKLFCKMYNMLGDYNLVRVVESMLQNRR
FT                 FYVSLHGKGADGEIKRMALRREACWHQFYIIYTLTINQLKVPDTSYTPMTW
FT                 PLLCSPEASRILRKNWRKHLRTCLNIIERTARELPKAKPRKDASMCFPLKY
FT                 KKMHTEPCKSDGKEAPIQKNAHRTLQIRWEGSTLKHTNTPKYLGVTLDRSL
FT                 TYKHHCLNTRQKVGSRNALLRKLAGSGWGANPDILRTTAQALCFSTGEYAC
FT                 PVWNRSAHAKTVDIALNETCRIITGCMKPTPLDLLYKASGFASPKDRRTAA
FT                 EYTERFKQTFDERHVLYNAQVPPGRLKSRKSFLRNVPIEPPKNYPLQQARP
FT                 TGSELDWKTWRTLNRMRTGVAPVKTIKAKWGLADAEDLLCECGEPQDMTHL
FT                 LQCLVAHSPVPSMIYGWSAMRQLTWPDIGPII"
XX
SQ   Sequence 3087 BP; 1057 A; 711 C; 688 G; 631 T; 0 other;
     gggacaagga aggagcctcc acgtaagcga ttataaccaa aaaccaaatg taacaaaaca        60
     gaacatgaaa ataaaagatc gctggcgttt aaagtttcaa agagacggct aatccttcca       120
     tcaccggaca aaccaaatca agcaaacttg ggaaactaag aacagcaatg ataatcggcc       180
     cttctcagag ccatctctga caatgatcac cgtaaacatc gagggtatta ctaggaataa       240
     acaggacata ctagcacaac tctgcaagac atcaaactgc gatatattgt gcattcagga       300
     gacacataga ggtaagttcg cccaaagtcc acaaatccct ggaatgaggt tgctggccga       360
     gatcccaagc cagaaacatg gcagcgctgt gttcgctaaa tcaaacatcg taataaaatc       420
     cgttggcact atgaaccaca aaggcattga gatagtaaca actgaagtgg gagaatgcac       480
     cgtcacatct gtgtataaac ctccaggtgc tgactttgaa tttacacccc ctgacaactt       540
     ttggtccaaa agaacaaagt tcgtcatagg tgactttaac agccatagca ccttatgggg       600
     atatgagaaa acagacaaga atggcgaggc tgtagagcag tgggcagaga ggagtggaat       660
     aactctaata cacgacccta aactaccgtt ttcctttaac agtaagatct ggaaaagagg       720
     atacaacacg atatttgttt ctcaacacct aacatccaac ataactgtgt taagatggtg       780
     catggtccga tcccaagaac tcaacaccgg ccgtaggaat cagtgtatat agtgcactca       840
     aaacaccaac aatcccattt aaaaggcgat ttaacttcaa aaaagccagg tgggcggatt       900
     tcacgaatca aattgacaaa gaaatcgtca agattgagcc aataccggag aactatgaaa       960
     ggttcgttga acttattaaa acgatctcaa ggaaatgtat accaaggggg tgtagacaac      1020
     aatacctacc gggcatgaca ggggaattga ggagctcgat ggagaagtac aagcggcttt      1080
     acgaggacga ccctttcagc gaggcgacta tagaatgcgg aacgaccctt ctggaagcta      1140
     tcggtgaagc cagaaaagtg aaatggttgg aaaccctaga gaaaatggac atgacacaca      1200
     gcagtaagct ggcctggaat actatcaaga aactctgtgg cgacccaata gaacataaaa      1260
     aacatggcaa tgtaacccct gaccaggtcg cacaccaact cctgctcaat gggaaacctg      1320
     aaaaaaagtg cagtcgctcc aaactagtac gaaacgtcca aaatgaatct aactcactca      1380
     gtgcattcaa aatgagtgaa ctaaatatgg ccataaatag catgaaaaat gggaagtccc      1440
     caggagtaga cgacatatgc acagaacaaa taaaacatct gggaccaatc acaaaacaat      1500
     ggcttctaag tctcctcaat acatgtgttc gctcttacaa gatccctaaa atgtggcgca      1560
     aagccaaagt ggtggcatta ctgaagccag ggaaagaccc cgacctgcca tgcagttacc      1620
     gtccaatctc cctactgtgc catctcttca agatatacga aagaatgatt ctgcaacgaa      1680
     tacaaaacat cgtagattcc aaactaatga cagagcaggc aggctttcgg ccaggtaaat      1740
     cttgcaccag ccaggtcctc aatctaactg aatttattga acaaggcttc gaaaggaaaa      1800
     acgtaacggg gctagctcta gttgacctga cagccgcata tgatactatt aatcacagca      1860
     aactattctg caaaatgtat aatatgttgg gcgattacaa cctagtaaga gtggtagaat      1920
     ccatgctcca gaatagaagg ttttatgtgt cactgcatgg gaaaggagca gatggagaga      1980
     tcaaaagaat ggccttgcgc agggaagcgt gctggcacca attctatata atatatacac      2040
     taacgatcaa ccaataactg aaggtgccag acacttccta tacgccgatg acctggccat      2100
     tgctgtgcag tcccgaagct tccaggatat tgaggaaaaa ctggagaaag cacttgagga      2160
     catgtctaaa tattatagag agaactgcct aaagccaaac cccgcaaaga cgcaagtatg      2220
     tgctttccac ttaaatacaa aaaaatgcac acagaaccct gcaaatcaga tgggaaggaa      2280
     gcaccttgaa gcatacaaac acccctaaat accttggtgt aacattggac aggtcactaa      2340
     cgtacaaaca tcactgcctc aacaccaggc agaaagtagg ctcaaggaac gctctgctta      2400
     gaaagctagc ggggagcggc tggggagcga accccgacat actgcgcacc acagcacagg      2460
     ctttatgctt ttcaacagga gagtatgcct gcccagtgtg gaatagatct gcgcatgcca      2520
     aaaccgtcga tatcgccctg aacgaaacgt gtaggataat cactgggtgt atgaaaccga      2580
     ccccccttga cctcctatat aaggcatctg gctttgcctc accaaaagac cgcagaacag      2640
     ctgcagagta cacagagcga ttcaagcaaa ctttcgacga gcgccacgtt ctctacaacg      2700
     cccaagttcc gccaggaaga ctcaaatcaa ggaaaagctt tttgaggaat gtaccaattg      2760
     aaccacctaa aaactaccca ctgcaacaag cacgccctac cggaagcgaa ctggactgga      2820
     agacctggcg aaccctgaat aggatgagaa cgggagttgc acctgtgaaa accattaaag      2880
     ctaagtgggg actagcggac gctgaggatc ttctgtgcga atgtggagaa ccacaggaca      2940
     tgacacattt gcttcaatgt ttagttgccc acagtcctgt accctcgatg atctatggtt      3000
     ggtcagcgat gcggcagttg acgtggcccg atattgggcc aataatttag gttgacggag      3060
     agtccggact cgaaaaagta aaagtaa                                          3087
//
ID   Vingi-9_LMi repbase;    DNA;    INV; 1574 BP.
XX
AC   .
XX
DT   04-APR-2014 (Rel. 19.12, Created)
DT   04-APR-2014 (Rel. 19.12, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon.
XX
KW   Vingi; Non-LTR Retrotransposon; Transposable Element;
KW   Vingi-9_LMi.
XX
OS   Locusta migratoria
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
OC   Acrididea; Acridomorpha; Acridoidea; Acrididae; Oedipodinae;
OC   Locusta.
XX
RN   [1]
RP   1-1574
RA   Bao W. and Jurka J.;
RT   "Non-LTR retrotransposons from the migratory locust.";
RL   Repbase Reports 14(12), 3503-3503 (2014).
XX
DR   [1] (Consensus)
XX
CC   >94% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1463
FT                 /product="Vingi-9_LMi_1p"
FT                 /translation="VLCHIFKLFEKVLHDRLSKAIDNYLIPQQAGFRPGKS
FT                 TTSQVINLTQLLEDGYENRKITGVAFIDLTAAYDTVNLRLLMKKLYAITRD
FT                 FKFTSIIRSLLQNRRFSVEFQGKQSRWRAQKNGLPQGSVLAPLLFNIYTND
FT                 QPLPAGTENYIYADDRAMAVQGDSFEEVEKRLTDALDALCQYYADSQLKPN
FT                 PSKTQVCAFHLRNKQANRKLRVSWKDTPLEHCANPKYLGVTLDRALTYKQH
FT                 CINTKMKVSGRNNILRKITNSSWGAKPEVVRTTALTVCFSAGEYASSVWYN
FT                 SAHAKQVDIALNETCRLVTGCLKPTPIDKLYHLAGIAPPAVRREAAAYSER
FT                 ARAELSESHLLHNIQPATRRLKSRRSFLRATDNLSDQPGSRVDRWKRSRER
FT                 HWMEPKEELAPGHNEDWTVWKSLNRLRTNTARSRDNLMKWGYSTVSNLCDC
FT                 GDVQTTQHMYNCPECPSHCTLEDLMLATPNAVDVARFWAKCI"
XX
SQ   Sequence 1574 BP; 465 A; 403 C; 354 G; 352 T; 0 other;
     cagtactctg ccatattttt aaactctttg aaaaagtgct gcatgatcgc ctctctaaag        60
     ccatagataa ctacctaatc ccccaacaag caggtttccg tccagggaaa agcactacat       120
     ctcaagtaat taacctcact cagctgcttg aggatggtta tgaaaaccgg aaaataactg       180
     gtgtcgcctt tatagacttg acagccgcat acgacaccgt caatttacgc ctgctaatga       240
     agaagctgta tgccattacc agggacttta aatttacatc tataattaga agtctgttac       300
     agaaccgtag gttctctgtg gaattccagg ggaagcaaag caggtggcgg gctcagaaaa       360
     atggccttcc tcaaggcagc gtactggcac ccttactttt caatatatat actaacgacc       420
     aaccgctgcc agctggtacg gaaaactaca tctacgctga tgaccgtgct atggccgtac       480
     agggtgactc cttcgaggag gtcgagaaaa ggcttacgga cgcgctagat gcgctctgtc       540
     agtactacgc cgacagccaa ctcaagccga atcccagcaa aacacaagtt tgcgctttcc       600
     atctccgcaa caagcaagca aaccgcaagc tgcgtgtctc ctggaaggac acaccactcg       660
     aacactgtgc caaccccaaa tacttaggtg taaccttgga cagggctctg acgtataaac       720
     agcactgcat taacaccaaa atgaaggtaa gcggcagaaa caacattctg cggaaaatta       780
     caaactcttc ttggggtgca aagccagagg tagtgaggac cacagcacta acagtttgct       840
     tctcagcagg cgaatacgcg agcagcgtct ggtataattc agcccacgct aaacaggtcg       900
     acatcgctct gaacgagacc tgcaggctcg tcactggatg tctgaaacct acgccaatcg       960
     acaagctata ccaccttgct ggcattgcac ctcctgccgt gcgtagagaa gctgcagcct      1020
     acagtgaaag agcgagggct gagttgtctg agagccacct cctccacaac attcagccag      1080
     ccaccagacg cctgaaatcc agacggagct ttctcagagc aaccgacaac ctcagtgacc      1140
     aacccggatc tagagtggac agatggaaga ggtcgagaga aaggcactgg atggaaccaa      1200
     aggaagaatt ggcaccaggc cacaatgagg actggacggt ttggaagtca ctaaacaggc      1260
     tacgcaccaa cactgcacgg tcaagagata atcttatgaa gtggggatat tctactgtat      1320
     ctaacctctg tgactgtgga gacgtgcaga cgacccagca catgtataac tgccctgaat      1380
     gtccttcaca ctgcacctta gaggacctga tgttggcaac cccaaatgct gtcgacgtag      1440
     cccgcttttg ggccaaatgt atataatatt tctgtctgtt tatagttcgt agtttacatg      1500
     tatgtaagta atctctgtat gttatacctt tataaacttc tgtacacatg atgcttctga      1560
     cacgaataaa aaaa                                                        1574
//
ID   Waldo-1_AAe repbase;    DNA;    INV; 6341 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele5;
KW   Waldo-1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6341
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6341
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as R1_Ele5.
CC   [2] Consensus update and characterization of target sequences.
CC   This consensus is generated from 30 sequences with >98% identity,
CC   and ~100% identical to the original sequence in [1]. 3' flanking
CC   sequences are all (AC)n microsatellites, and some are in tandem
CC   sandwiching (AC)n. Thus renamed as Waldo.
XX
FH   Key           Location/Qualifiers
FT   CDS           757..2163
FT                 /product="Waldo-1_AAe_1p"
FT                 /translation="MEVSVIEVEEEVTNPFVKSGLVRTPPPQTQQVQKQPT
FT                 NEQQAQQQGQQQYSVWTKPPQPPRVETAKKLVDELHEYVDKRSNVHKDIKA
FT                 LVIKLQGALGSAVKEWKNVVQRAEAGEKELLAVKTALEACRAAEMRRAEAD
FT                 TATREVNAARSIPPGVQSTPFFTPKRPRASPGDVRPGGPKRHKDVRVTGAK
FT                 PPPEATDVVNSHTEWQVVGKKNRKKEKASKKKPPEKRKVVRTRNKSEALIV
FT                 KASDDSYAEVLRAMRMNPDLKELGEDVQKVRRTRNGEMLFELKRDPKAGSI
FT                 SYKELTEKALGNKVEVRALCPEATLLCKDLDEITTEEEVKLALKEQCELGE
FT                 VQMTIRIRNGPDGTKVASIKLPVDAANKALRVEKVCVGWSVCPLSVSQQPD
FT                 VCFKCLGFGHFARNCQGPDRSKLCRRCGEEGHKAKDCSKPPKCLICAATGD
FT                 NEHPTGGSRCPASKRARATKSQWR"
FT   CDS           2118..5120
FT                 /product="Waldo-1_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPSLQTSESNEVPVEVVQINLNHCDTAQHLLRQSVAE
FT                 HRCDVAIISEPYQIPPGDGNWISDGTKTAAIWTVGKYPIQEVVHCADEGFV
FT                 IAKINGVFICSCYAPPRWTIEQFNRMLDKLTEELTDRRPVVVAGDFNAWAV
FT                 EWGSRLTNPRGSSLLEALAKLNVDLANDGTTTTYRKDGRESIIDVTFCSPG
FT                 MIRDMNWRVCEDYTHSDHQAIRYRFGRCLQMESSGAQIYERRWKTEIFNKD
FT                 VFVEAMRRENNLVNLSAEELTAALSRACDATMPRMGKPRNCRRPAYWWNST
FT                 IGDLRAHCFQARRRMQRASNNVEREERRLPYRAARAALNKAIKLSKKACLE
FT                 ELYRNANENPWGNAYKVAMAKMKGPAIPPDRCPEKMKVIIETLFPTHEPTV
FT                 WPPTPYDEQDVHDEETRVTNEELVVVSKALPVKKAPGPDGIPNLALKTAIQ
FT                 ENPDMFRTTLQKCMEDGNFPDIWKRQKLVLLPKPGKPPGDPSAYRPICLLD
FT                 TVGKLLERVILNRLTKYTENENGLSNMQYGFRKGRSTIDAIRMVVETMETA
FT                 QKQQRRGNRYCAVVTLDVKNAFNSASWVAIADSLHRLRVPKYLCQILKSYF
FT                 QNRTLIYETDAGIRNLLVTAGVPQGSILGPTLWNVMYDEVLKLNLPRGVKI
FT                 VGFADDVVLVVIGESREEVEVLATEAIDAVENWMREKKLALAHQKTELVMI
FT                 SNRKAVQNVSIMVGECIINSKREVKHLGVMLDDRLNFNSHVDYVCNKATKV
FT                 ISALSRIMPNNSAITSSKRRLLASVSTSIIRYAAPAWSAALKTGRNRAQLN
FT                 RTFRLMAMRVASAYRTISSHAVHVIAGMIPICLLLEEDSECYRDRATGRGR
FT                 NRARANTLSKWQQQWNNAEKGRWTYRLIPNVSIWTTRAHGEINFQLTQFLS
FT                 GHGCFKQYLHRFGHARSPLCPECRDIEETPEHVVFTCPRFAQQRSEMTAIV
FT                 GDDVNVENIVLKMCSNEDKWNAVNRSVVQIMSTLQRTWREEQRQMT"
XX
SQ   Sequence 6341 BP; 1789 A; 1457 C; 1876 G; 1219 T; 0 other;
     gcagcaggga caggagtcca ggggcttgac gaaccccccc tctgcgagtc gggtgggagc        60
     ttaggaagca tttcttaagc gaaaaaactc catgcatccg tatggattac caccttttgg       120
     cacttctctc gagaagtgac cgagctcctc ccagttagct caagcagagg atgcctagga       180
     tgtggtgggg gttcaacagt gggctctgtt ggatctctgc aaaaagccac atatccgcaa       240
     gcaactccgt acaagcggcc tggcaccgct ttcaaagtgc cttagcccaa ccattggagt       300
     gccaaccggc acatcaggat cgatgccagt aacatcctga ttatggtata ctggtgaagg       360
     cgttcaacaa cggacaagct acggatcacg gattggatgg cgttattggg ctgacagtcg       420
     ggccattctg ctccctgatt aaggaagggt gacaccgacc tgaaacggcg agtgggctca       480
     tggttcgatt gcctccgtcc cgttaaaacc ttggcaggcc tccggatacg ttcgaaatct       540
     gtccatcagt tctgatgagt acgtaggttc ggatggaaca ttcccgatct acgccgatct       600
     ggcactgtac ccggccccca taagggtccg tgtcaaccct cgcatggcct caatgcttgc       660
     aggtatagtt gcttgcaggt acagataacc atgggatcgt gaaggcgact acgtacggcg       720
     gatggagata gcggctcgga ggggggaccc tgaagaatgg aagtaagcgt aattgaagtt       780
     gaggaagaag tgacaaatcc gtttgtcaag agtggattgg tgaggacacc gccgccgcaa       840
     acccagcagg tgcaaaagca gcccacgaac gagcagcagg ctcagcagca gggtcagcag       900
     cagtatagcg tgtggacgaa accaccacaa ccaccgaggg tagagacagc gaaaaagttg       960
     gtggacgagc tgcacgagta tgtggataag agaagtaacg tgcacaaaga catcaaggcg      1020
     ttggtgatta agctccaagg cgctcttggt tcagctgtaa aggagtggaa aaacgtagtg      1080
     cagagagcag aagcagggga gaaggagttg ttagcggtta aaactgcctt agaggcatgt      1140
     cgcgcagcgg aaatgcgaag ggcagaagcc gacacagcta cgagggaggt caacgcggcg      1200
     agaagtatcc ccccaggggt gcagtccacg cccttcttta caccgaagag gccaagggca      1260
     tcgcctggag atgtcagacc aggtggtccc aagagacaca aggatgtccg tgtcactgga      1320
     gctaaaccac caccagaagc aaccgacgtg gtaaacagcc acactgaatg gcaggtcgtt      1380
     ggcaaaaaga atagaaagaa ggagaaagcg agcaagaaaa aaccgcccga aaaacgtaag      1440
     gtcgtcagga cgaggaataa gagcgaggct ctcatcgtca aagcgagtga cgactcgtac      1500
     gccgaagttc tacgcgctat gcggatgaac ccggatctta aggagctagg ggaagacgtg      1560
     caaaaggtca ggcgcactcg taatggagag atgctctttg agctgaaaag agatcccaag      1620
     gcaggcagca tctcgtacaa ggagcttacc gagaaagctc tcggaaacaa ggtggaagta      1680
     agagccttgt gcccggaagc gactctcctg tgtaaagatc tggacgagat taccacggag      1740
     gaggaagtaa aattagccct gaaggagcaa tgcgagctag gagaggtcca gatgaccatc      1800
     cgtatcagga atgggcctga tggcacgaag gtagcatcaa ttaagctgcc agtagatgca      1860
     gctaataaag cgttgagagt ggagaaagta tgtgtgggct ggtctgtgtg cccgctgagc      1920
     gtttcccagc aaccggacgt gtgcttcaag tgtctgggct ttggtcactt cgcacggaat      1980
     tgccaagggc cggataggag caaactatgc agaaggtgtg gcgaggaagg tcacaaggca      2040
     aaggattgct cgaagcctcc gaaatgccta atttgcgctg ctacggggga taacgaacac      2100
     cctacaggcg gtagcagatg cccagcctcc aaacgagcga gagcaacgaa gtcccagtgg      2160
     aggtagtgca aatcaacctc aaccactgtg atacggcaca acatcttctg cggcaatctg      2220
     ttgcggaaca tagatgcgat gttgcgataa tttcggagcc ataccaaatt ccacccggag      2280
     atggaaactg gatatcagac ggaaccaaaa ctgcagcgat atggacagtg ggaaaatacc      2340
     ccattcaaga agtggtgcac tgcgcagatg aaggattcgt tatagccaaa atcaacggtg      2400
     tcttcatctg tagttgttat gcacctccac gatggacgat cgaacagttc aaccggatgt      2460
     tggacaaact gacggaagag ctaaccgacc gaagaccagt ggtagtagct ggagacttca      2520
     atgcttgggc ggtcgaatgg ggcagccgcc tcacgaaccc aagggggagc agccttctgg      2580
     aggccctagc taagttgaac gtcgatctcg ccaatgacgg taccaccacc acctaccgta      2640
     aggatggtcg agagtctatc atcgatgtca ctttctgcag cccaggaatg atacgtgata      2700
     tgaactggag agtatgcgag gattacaccc acagcgacca ccaagcgatt cggtaccgct      2760
     ttgggcgctg tttgcagatg gaatcgagtg gagcccagat atacgagcgg aggtggaaaa      2820
     cagagatttt taacaaggac gtgttcgtgg aagcgatgag gcgtgagaat aacttagtaa      2880
     acctaagcgc agaggagttg actgcagccc tatcgcgggc gtgcgatgca actatgccga      2940
     ggatggggaa acctagaaac tgtcgacgac cagcctactg gtggaattcg acgatcggtg      3000
     acctacgcgc acattgcttc caagctagga ggaggatgca gagggctagc aacaacgtcg      3060
     aaagagaaga aagaagattg ccctataggg cggcaagggc cgcactcaac aaggcaatca      3120
     agctcagcaa gaaagcgtgc ctggaagagc tctaccgcaa tgccaacgaa aacccgtggg      3180
     ggaatgccta caaagtggcc atggcaaaga tgaaaggtcc agcaatacca cccgacagat      3240
     gtccggagaa aatgaaggtt attatcgaaa ctctttttcc gacgcacgag cctacggtct      3300
     ggccacctac accgtacgat gaacaggatg tacacgacga agagacccgt gtaacgaacg      3360
     aggaactggt cgtggtatcg aaagccttac cagtgaagaa ggcaccgggt ccggacggga      3420
     ttccaaactt ggcccttaaa acggcaatcc aggagaatcc agacatgttc aggactacac      3480
     tgcaaaaatg tatggaggac ggaaactttc ccgacatttg gaagcgacaa aagctggtgc      3540
     tgctaccaaa gccaggtaag ccgcccggcg atccttctgc atataggccg atatgcttgt      3600
     tggatactgt cggaaaactg ttggagagag tgattcttaa caggcttacg aagtatacgg      3660
     agaacgagaa cggtctatcg aacatgcagt atggattccg gaaaggtaga tctacgatag      3720
     atgccatccg aatggtagtg gaaaccatgg agacggcaca gaagcagcag aggagaggga      3780
     accgatattg tgcggttgtc actcttgacg ttaaaaacgc tttcaacagc gccagctggg      3840
     tagcaattgc cgactcgttg cacaggttga gggtgcctaa gtatctatgt cagattctga      3900
     aaagctattt tcagaaccgg acactgatat atgaaacaga tgccgggatc agaaatctgt      3960
     tggttacggc gggcgttcca cagggatcca tcttgggtcc caccctttgg aatgtcatgt      4020
     acgatgaagt gctgaagctg aacctgccca gaggagtcaa gattgtcggt tttgcggacg      4080
     atgtagtgct tgtagtgatc ggcgaatcac gggaagaggt ggaggtactg gcaacggagg      4140
     cgatagatgc cgtggaaaat tggatgcgag agaagaagct agcgttggcc catcaaaaga      4200
     ctgaattggt tatgatcagt aaccggaagg cagtacaaaa tgtgagcatc atggtcggtg      4260
     agtgcatcat aaactcgaag cgagaagtga aacacctggg cgtgatgttg gacgaccgtt      4320
     tgaatttcaa cagtcacgtc gactacgtct gcaataaggc gacaaaggtg atatcggcct      4380
     tatcccgaat tatgcctaac aattctgcga ttaccagtag caagaggagg ctactggcga      4440
     gcgtgtcaac gtcgatcatc cggtatgcag ctccagcgtg gtcggcggca ctgaagacag      4500
     gacgaaatcg tgcccagttg aaccgtacgt ttaggctgat ggcaatgcgt gtagcgagtg      4560
     cgtatcgaac gatatcatcg cacgccgtgc acgtaatagc cggaatgatt cctatctgcc      4620
     ttctactgga ggaggatagc gagtgctaca gggatcgagc cacagggaga ggccggaaca      4680
     gagcgagagc caacacgctt agtaaatggc agcagcaatg gaacaacgca gagaagggca      4740
     ggtggactta ccgactgatt ccaaacgtgt cgatatggac cactagagcg cacggcgaga      4800
     ttaattttca actgacgcaa ttcctgtctg gtcatggctg ctttaagcag tacttgcaca      4860
     ggttcggcca cgcaaggtca ccgttgtgcc ctgaatgccg agacatagaa gaaacaccag      4920
     agcacgtagt ctttacttgc ccacggtttg cacagcagcg aagcgaaatg actgccatcg      4980
     tcggagacga cgtgaacgtg gaaaatatcg tcctaaagat gtgtagtaat gaagataagt      5040
     ggaacgcggt gaaccgatct gttgttcaga ttatgtcaac actacagcgg acatggcgag      5100
     aggagcagcg tcagatgacg taggcagccc tgccgaacga agaagggcgc cggactgttt      5160
     tcgacactct aaaagagcgg acgaagggaa agtgatactg ctcggttccg ggagatattc      5220
     ctttgccggg gaactctccg ccggagtagg ctagatccac cgccggggac tagctgagta      5280
     gacgcgacgt agcaccggtc ccgggtcgta ggagcaccag tgaaccggaa gttagcctcc      5340
     accggaatcg ctggactgac tccggcaccc taccggtcgg cccgtaaaaa attgaagagc      5400
     agcagtagca gcagcagaag aagaatcggt atcggaagaa cttccatcgc cggggaattc      5460
     ttcgtcggtg taggctaggt tcaccgccgg ggactagttg agtagacgtg tcatagcgac      5520
     ggttgagggt cgtcggggca ccagtgaacc ggaagctagg ctccaccgga atcgctggac      5580
     tgacttcggc acccctccgg tcggctcgta tcgtagaagt agaagaatcg gtgtcgggag      5640
     aaattccacc gccggggaac tctccgtcgg tgtagattag gtccaccgtc ggggactggt      5700
     cgagtagaat acgtcggaac gctggtattg aatagtcggg gcgcctacga accggaagtt      5760
     atgctcaacc ggaatcgttg gaccgacctc ggcatcttac cagctgaact atggaaagga      5820
     gatggtcgcc gtaaccgtac gagtgcgggc tttgtatgag ctcagagtgg tgcacaaact      5880
     ggagccgaag ggctcagaat gttgcatgta ggtactaaca aattgacggg tcgccaaagg      5940
     gcgaaaatag gtattaacaa attactaacg agtggagccg aagggctcag catgaggcac      6000
     gtcgttgaac ggttttaaaa ctgctaacag gagtcgaagg gctcaggagc caaagggctc      6060
     aggagccgaa gggctcagga gccgaagggc tcagcatgta gaataacaaa ttgaagtggt      6120
     gcgctcagca cgttgtcctc cccttcgaag taataccgga aggtagttcc ggagggtgat      6180
     ggtgatggta ctaaacctag gagagtgttt ttagtgggga aggcactaag tggatcccac      6240
     accgcgccaa aaattacact ggcatgagca tgaacatata caggccagtc tatgaagatt      6300
     tttaaactcc tagttgcatg aaaaaaaaaa aaaaaaaaaa a                          6341
//
ID   Waldo-1_CQ  repbase;    DNA;    INV; 5409 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   23-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A (AC)n-specific Waldo non-LTR retrotransposon from Culex
DE   quinquefasciatus - consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Waldo-1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-5409
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
RN   [3]
RP   1-5409
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 648-648 (2011).
XX
DR   [3] (Consensus)
XX
CC   This consensus is generated from 10 sequences with >99% identity.
CC   Both sides of this transposon are (AC)n microsatellites,
CC   similarly to other Waldo elements such as WaldoAg1 in Anopheles
CC   gambiae (malaria mosquito) and WaldoFs1 in Forficula scudderi
CC   (earwig) [2]. Waldo is a group of (AC)n microsatellite-specific
CC   non-LTR retrotransposons belonging to the R1 clade.
XX
FH   Key           Location/Qualifiers
FT   CDS           451..1926
FT                 /product="Waldo-1_CQ_1p"
FT                 /translation="MKTSETNQQKGPDAPQASENTEVEEDANVEMAGGESN
FT                 GGDTAGGVASAFRGSGKVLRSPVLNQAAASSQQIGVIGEETPKSSLLNFAG
FT                 STPQDGVLLGRTALQEVRRRVNELFDFIKDKNNVHTRIKQMVNGVKAAMNA
FT                 AERENNSLVVTRNSLKLRAERAEETLNAKLEEEALREKEPKTPPGPSSKRD
FT                 RETPGEEEDAKKQKQGNGDSPDPAKEPEPTPGKEKEWEKVKKKKRKKKGKQ
FT                 NEDTQKPKFRRERNKGEALVVEVKEGVSYADLLRKVRTDPELKELGENVVK
FT                 TRRTQTGAMLFELKKDPAVKSSAFKSLVEKAVGYESKVRALSPETTIECRN
FT                 LDEITTEEELEDALIVLLDDRTTPMAIRLRKAYGGTQIASIRLSTPSASKL
FT                 LETGKVKVGWSVCPLRPVPRVTQQMTRCFRCMGFGHQARNCDGPDRTNSCR
FT                 RCGREGHMARDCKNQPKCVLCKEGDGNSHATGGFNCPVYKKLASGKK"
FT   CDS           1929..4895
FT                 /product="Waldo-1_CQ_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MEVSQVNLNHCDTAQQLLWQSTAETGCDVAIIAEPYR
FT                 VPHDNGNWAADTARMAAIHVMGRYPIQEVVSRAFEGFVIAKVNGTFFCSCY
FT                 APPRWTLEQFQQMLDSLTDELIGRSPIVIGGDFNAWAVEWGSRCTNARGHS
FT                 LMEALAKLDVRLANRGTSSTFRKDGRESIIDVTFCSPRLAADMNWRVSEDY
FT                 THSDHQAIRYSIGRRAPVPDRSSRSYGRKWKLQYFDEGLFVEALHWCDGPQ
FT                 DLSADVLTAQLVTACDTTMPRRLEPRNCRRPAYWWNEELGTLRASCLSARR
FT                 RVQRARSEATREECREEYRSAKAALKKAIKCSKTNCFKELCQDADANPWGS
FT                 AYRVAMAKIRGPSMVAETCPDKLKVIVEGLFPRHDPTTWPPTPYNDEGGSN
FT                 AEGHLITNEELVAVAKRLKVKKAPGPDGIPNFALKSAVLAFPDRFRTVLQE
FT                 CLDEGHFPDPWKVQKLVLLPKPGKPPGDPSSYRPICLLDTLGKLLERIILN
FT                 RLTKYTESEHGLAARQFGFRKGRSTVDAIRKVVEKADEARRKKRRGNRCCA
FT                 IVTIDVKNAFNSASWAAIAAALHKMKVPDYLCRILKSYFENRVLVYDTADG
FT                 QKTVVVTAGVPQGSILGSALWNGMYDGVLTLGLPNGVEIVGFADDIVLTVT
FT                 GENVEEVEVLAMEAIAMIENWMLEVKLRIAHHKTEMVLVSNHKKVQQAQIH
FT                 VGEHVVHSKRALKYLGVMVDDRLNFNSHVDYACEKAAKAIMALSRMMPNNA
FT                 GPRSSRRRLLASVATSILRYGGPVWWTALGTKRNRALLDRTQRLMAMRVAS
FT                 AYRTISSEAVGVIAGMIPIGITLEEDTVRYTRRGTRGIREAARAESLARWQ
FT                 REWDTTEKGRWTHRLIPSVSTWVSRRHGEVTFHLTQFLSGHGCFRKYLHRF
FT                 GHAESPLCPDCVDCEETPEHVVFACPRFEAARSEMLAIIGADTSPDNVVRR
FT                 MCSDIAKWNAVVGAVTQITSALQRKWRDDQRRND"
XX
SQ   Sequence 5409 BP; 1448 A; 1326 C; 1696 G; 938 T; 1 other;
     cccgtgaacc gtggggacag gtgagggtcc ctgcggagct tagctgccag ctaccgggcg        60
     ggttgcagta ggcggatagc tgtcggcgat tgcatacatt cattgcatcg cccccggacc       120
     agcagcggga ggatgtctag gacgtggcgg aattgaacaa gggcactgtt taatttcttc       180
     gaaaaaacca catgggtccg taaacacctc tgtcaagcga tcgaacgccg ctataagtgt       240
     tttagcccaa aacctcacca aaccccgaat ccaagatgtg atgcgacccg tgtcgaggga       300
     tgcatggctg ggggggttca acaaattccc agtcgataac ggagcctgtg gggcacaggg       360
     gcgaacccca cacgtaattt gcccttactg cgtcacggca gggcactggc gcagcggacc       420
     gtatttccct agcgactcgt gggattcaaa atgaagacaa gtgaaacaaa ccaacaaaag       480
     ggtcccgatg cgccccaagc atcggaaaac acggaggtag aagaggacgc aaacgtcgaa       540
     atggcaggag gcgagtcaaa cggcggcgac acagcaggcg gagtggcgag cgcgttccgt       600
     ggaagcggga aggtgttgag atccccagtg ttgaaccagg cggctgcttc gagtcagcag       660
     ataggagtaa ttggagagga gactcccaag tcatccttgt tgaacttcgc cggcagtacc       720
     cctcaggacg gagtcctgct tggaaggacc gcgttacagg aggtcaggag gagggtcaac       780
     gaactctttg atttcatcaa ggacaaaaac aacgtccaca ccagaatcaa gcagatggtg       840
     aatggagtca aggcagccat gaatgccgca gagcgcgaaa acaactcgct ggtggtgacg       900
     cggaattcac tgaagctcag agctgaaaga gccgaagaaa cgctgaatgc aaaactggag       960
     gaggaagcgc tacgggagaa agaaccgaaa acgccgcccg gcccaagctc taaaagggac      1020
     agggaaacgc ctggagagga ggaggacgca aagaagcaga agcaggggaa tggagacagt      1080
     ccggacccgg cgaaggaacc agaaccaacc ccagggaagg agaaggaatg ggagaaggtc      1140
     aagaagaaga agcggaagaa aaaagggaag cagaacgagg acacccaaaa acccaagttt      1200
     cgcagggagc gtaacaaagg cgaggctttg gtggtcgagg tgaaggaagg tgtttcgtac      1260
     gcagacctcc tccggaaagt acgaaccgat ccggaactca aggagcttgg cgagaacgtg      1320
     gttaaaacca ggcgcaccca aaccggagcg atgctttttg agctgaagaa ggatcccgcg      1380
     gtcaagagct cagcttttaa gtccctcgtc gagaaagccg taggctacga gtcgaaggta      1440
     agagcgctat caccggagac aacgatcgag tgcaggaacc tggacgagat cacgacggag      1500
     gaagagctag aagatgcgct gatcgttctt ctggatgacc gtacgacacc gatggcaatc      1560
     cggttgagga aagcctacgg cggcacgcaa attgcgtcga tccgactatc gacgccttcg      1620
     gcgtctaagc tgctggaaac cggcaaggtc aaagtagggt ggtcggtgtg cccactgagg      1680
     cctgttcctc gagtgaccca gcagatgacg aggtgtttcc gctgtatggg cttcggccac      1740
     caggcgagaa attgcgacgg tcccgatcga accaacagtt gcagaaggtg tggtagagaa      1800
     ggccacatgg caagagactg caaaaatcag ccgaagtgcg tgctctgtaa agaaggcgac      1860
     ggcaatagcc atgcgacggg tggctttaat tgcccggtgt acaagaagct ggcctcgggc      1920
     aaaaagtaat ggaggtgtcc caggtgaacc tcaatcactg cgacactgca cagcaactgc      1980
     tgtggcagtc gaccgcggag acggggtgtg acgtggcaat tattgcagaa ccgtaccgag      2040
     ttccacacga caacggaaac tgggccgcgg atacagcaag aatggcggcg atacacgtga      2100
     tggggcggta ccccatacag gaagtggtct cgagggcgtt tgaaggattc gtgatcgcca      2160
     aagtaaacgg aaccttcttc tgtagctgct atgctccccc aagatggacc ttggagcagt      2220
     ttcagcagat gctggatagt ctgaccgatg aactgatcgg acgaagcccg atcgttatcg      2280
     gaggtgactt caacgcgtgg gcggtcgagt ggggtagcag atgcaccaat gctagggggc      2340
     atagcctaat ggaagctctg gcaaagctag acgttaggct ggcgaatcgc ggaaccagca      2400
     gtaccttccg caaagacggt cgtgagtcca ttatcgacgt tacgttctgt agcccgcgac      2460
     tggcggccga catgaactgg agggtgagtg aggactatac ccatagcgat caccaagcga      2520
     tccggtacag catcgggaga cgagcccctg taccagatag gagcagccgg tcctacggaa      2580
     ggaaatggaa gctgcagtac ttcgacgagg gtctcttcgt ggaagcgctc cattggtgtg      2640
     atggtcccca agacttgagt gccgacgtgc taacagcaca actggtgaca gcatgcgaca      2700
     caaccatgcc gcggagactg gagccaagga actgtcgtcg tccagcctac tggtggaatg      2760
     aagaactcgg tacccttcgg gcaagttgcc tcagcgccag aagacgagtc cagagagcaa      2820
     gatccgaagc aactagagag gagtgcagag aggagtaccg gtctgcaaag gccgcgctca      2880
     agaaagcgat caaatgcagc aagacaaact gcttcaagga gttatgccaa gacgctgatg      2940
     caaacccttg ggggagcgca tatcgtgtag cgatggcgaa gatcagaggc ccatcgatgg      3000
     tggctgaaac gtgtcccgac aagctgaagg tcattgtgga agggctcttc ccaagacatg      3060
     acccaacgac atggcctcct acaccgtaca acgacgaagg gggtagcaac gccgaaggtc      3120
     atctgatcac caacgaggaa cttgtggcag tagcgaagag attgaaggtg aagaaagctc      3180
     ccggcccgga tggaatcccg aatttcgccc tgaaatcggc ggttctagca ttcccggaca      3240
     ggtttcgaac agtcctgcag gaatgcctgg acgaaggaca cttccccgac ccgtggaagg      3300
     ttcaaaagct cgtgttgctg ccgaagccag gcaaaccacc gggggaccca tcatcgtata      3360
     ggcctatatg tttgctggac accctcggaa agcttctgga acggatcatc cttaaccggc      3420
     tgaccaagta cacggagagc gagcatggct tagcagcgag gcagttcggc ttccgtaaag      3480
     ggagatccac ggtggacgcc atccggaaag tggtcgagaa agccgacgaa gcgcggagga      3540
     aaaaacgcag ggggaaccgt tgctgcgcaa tagtcacgat tgacgtcaag aacgcgttca      3600
     acagtgcgag ctgggcggcc atagcagcag cgctgcacaa aatgaaggtg cctgactatt      3660
     tgtgcaggat cttgaagagc tacttcgaga accgcgtgct ggtctacgac actgccgatg      3720
     gacaaaaaac cgttgttgtt accgcgggag ttccgcaggg atccattctg ggttcagcac      3780
     tgtggaatgg aatgtatgac ggagtgttga cactgggact acccaacggc gtagagattg      3840
     ttggctttgc agacgacata gtgctgacgg taaccggcga aaatgtcgag gaggtcgaag      3900
     tgctggctat ggaggcaatc gcaatgatcg agaactggat gctcgaggtg aagctgcgga      3960
     tcgctcacca caagacggag atggtgctgg ttagtaacca caagaaggtg cagcaggccc      4020
     agatwcacgt tggagaacac gtcgtgcact cgaagagagc gctcaagtac ctcggggtga      4080
     tggtggatga ccggctgaac ttcaacagcc acgtcgatta cgcctgcgag aaggcggcta      4140
     aggcgatcat ggcactgtcg aggatgatgc cgaacaacgc tggacccagg agcagtaggc      4200
     gccgcctctt ggcaagtgtc gcgacgtcca tacttaggta cggcggaccg gtatggtgga      4260
     cggcgctggg gacgaagcga aatcgagcgc tgctcgacag aacgcagaga ctgatggcca      4320
     tgcgggttgc aagcgcgtac aggaccattt cgtcggaagc agttggcgtc atagccggaa      4380
     tgatccccat cggcatcaca ctggaggagg acaccgtgcg ctacacccgg agaggcacga      4440
     gaggtatccg ggaagctgcg agagccgaat cgctggcaag gtggcaacgt gagtgggaca      4500
     ccacggagaa aggcagatgg acgcatcggc ttatcccgtc cgtatccacg tgggtgagca      4560
     gaaggcatgg agaggtcacc ttccacctca cacagttcct gtcgggccat ggctgcttca      4620
     ggaagtacct gcacaggttt ggacatgcag agtctcctct ctgtccggac tgcgtcgatt      4680
     gcgaggaaac accggagcac gtggtgttcg cctgccctcg cttcgaggca gcgcgaagcg      4740
     aaatgctggc cattatcgga gcggacacca gcccggataa tgtggtgcga agaatgtgca      4800
     gcgacatcgc caagtggaat gcggtcgtcg gagcggtgac gcagatcact tcggctctcc      4860
     agcggaaatg gagagacgat cagaggagga acgactagga gcctagtcga aaacccacga      4920
     gtgtggctgt gaaggagagc acgttatgat ggtcggctct accaaatcgg tacacgtctc      4980
     gatggtcaca ggagtcgaga acccacgagt gtggctgtga aggagagcac gttatgacgg      5040
     ttggctctac caaatcggta cacgtctcga tggtccaagg agagggctgc atatgactag      5100
     ccgatcaaaa gcaacgcgat tcttgggcgc ggttaaaccc tcgcatggac tcatatgtat      5160
     gtaggacagg aaatggttct agcacccggc atggatcctg taagtagact agtgcagaaa      5220
     atgcaacgcc tccccccgaa gttataccga aaggtggtcc cggggggaca agggcacggc      5280
     gttcaaggac tggtttagtg ggtcgggaaa actctttttt tgttttccca accccacact      5340
     acctgaggaa tgaattctca ggtgtctggt agcagattcc gaccttgtaa aaaaaaaaaa      5400
     aaaaaaaaa                                                              5409
//
ID   Waldo-1_DHyd repbase;    DNA;    INV; 4696 BP.
XX
AC   .
XX
DT   16-OCT-2019 (Rel. 25.08, Created)
DT   16-OCT-2019 (Rel. 25.08, Last updated, Version 2)
XX
DE   Non-LTR retrotransposon from the Drosophila hydei genome -
DE   consensus.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Waldo-1_DHyd.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-4696
RA   Kojima K.K.;
RT   "Non-LTR retrotransposons from the Drosophila hydei genome.";
RL   Repbase Reports 20(8), 2449-2449 (2020).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. It is followed by (CA)n
CC   microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           273..1586
FT                 /product="Waldo-1_DHyd_1p"
FT                 /note="zinc finger."
FT                 /translation="MEDELQAFAXRSTLLRSPPQQQVALQQXATXEDSPTA
FT                 EREVPTTMKKALEQMGAVLEGLSVLFGGQRHINALMREELARLVXLHKTAE
FT                 SFCNRSVKNCEVQTTPRASNNQQLCEPTKEATAKRSMAAQGGNSSTHKRSR
FT                 DAAPEQWKTPSKKPKYSKAGEAGVEKPTAQQGTSTNAKQDGIQSNSWTVVK
FT                 GRKPLQKRTRADAITVSSVDGCSYADMLRVVKSDPTLKHLSADVHGIRKTA
FT                 KGDLLLQLNRKPEHSAEVLQQAVGKALGNRAIVKTLTETATIEIRDLDELA
FT                 CKEEILDAINEAVKDCPLSIDAIKSLRPAFGGQQRATVVLPVGKARALLEL
FT                 SKVRIGWVVCRIRAVEQPKRCFKCMDYGHFAVNCTSDESLKSACFRCGELG
FT                 HISKTCVKPPKCGLCVRKGAKPTDHAAGSFKCPSYREAVQKMRC"
FT   CDS           1583..4558
FT                 /product="Waldo-1_DHyd_2p"
FT                 /note="apurinic-like endonuclease and reverse
FT                 transcriptase."
FT                 /translation="MLRLLQLNLNHCVAAQDLLTQSVRERRIDVAILSEPH
FT                 HRMSSCPRTWASDTRGQAALWICGNSTTKLSKVKSFNGFVRAQFGSLWVYS
FT                 CYLAPSLQLNEFIAVLDELVEDVRGRRAIIAGDFNAWAMEWGSQRTNARGR
FT                 SLLESFATLDVALLNTGNQFTFSRAGCGSIVDITFVSSSLFREARWCICDS
FT                 YTGSDHSAIRFTIGEPPIRSPSLLREAYRLDTFDPIAFSEAIQSLATSGNA
FT                 EQRASQMVEQMRMACNASMQRRKLFRRHQAPVYWWNDEICLIRRTCIQARR
FT                 NYQRARGRPTYDARQSEYQTARTQLKKAIRASKRRHFLELCDSAELDPWGK
FT                 AYKIVVKKIYASKQSQPTDREELKVIVETLFPSRLSRMLGSGSNIDIEESP
FT                 SARPILATEDEILAAAVSLRPNSAPGPDGIPNRALKLALALHPDAFAELFN
FT                 VCLLQRTFPAIWKKQNLVLLPKPGKPTEEPSSYRPICLLDTIGKVFEKLLC
FT                 SRLETAIATGGGLSPNQFGFRKARSTTDALSKVVDLATSAIEGTRWKHGAK
FT                 QYCIIATLDVKNAFNTANWDMILDALAQYNIPKYLREIIKSYFEGRAIIYN
FT                 TSEGDQTHLVSAGVPQGSVLGPLLWNAMYDGVLRLDLPAGSHTIGFADDVA
FT                 VVTIGKELKDTEDMCSASISCIRDWLTAAGLELAAHKTEAVLVSSRKRVET
FT                 AHIKIGSTTIESRRAIKYLGVMLDTRMTFREHLEYVHKKAADSCTALSRIM
FT                 LNSRGPKQQRRLLLTSVIRSIILYAAPIWSRAMKTPSYSRGICATYRLSAI
FT                 RVSCAFRTVSEEAALVIAGMVPLEDLVTEAVERSTRTQTRSSDRSNSIARW
FT                 QIKWNNSTKGRWTHSLIPELEPWINRRHGTTNFYLSQILSGHGCFRSYLKR
FT                 FGHEDTDECSWCGRGIVEDANHVTFECGRFLEERLSLEEKLGRPIRVESMV
FT                 NTMLESETAWNLISSFATIMMTELRRVERSRRSTYHD"
XX
SQ   Sequence 4696 BP; 1329 A; 1175 C; 1236 G; 949 T; 7 other;
     ttagaaaagc ctagctggca cgcttaagca acaaccagca gcaggtgcac tcactctaac        60
     atctgttagc agtgttggaa actgtagtga tcggtcagct gttcaccaca cwctggtgag       120
     taagcgtgcc tcagcaaaga caacaaccaa acgcctggac cgatcttgaa gccgtagaaa       180
     gcagtgcata gttttaggct tgcaacaagc ttccaggcwt ccagggtatt tggtacccgt       240
     ctcttgccgc tagtaggagc aagaagtgca gcatggagga cgagcttcaa gcctttgcca       300
     kkcgctctac gctgctgcga tcaccaccac aacagcaggt ggcgctgcag cagwgtgcaa       360
     caatsgaaga ctctcccacg gccgaaagag aagtgccaac tactatgaaa aaggcgctag       420
     aacagatggg agctgtccta gagggcctgt cggtactatt cgggggccaa cgccacatta       480
     atgccttaat gagggaagag ctagcaaggc tggtcawcct tcacaagacg gcagagtcat       540
     tctgcaatcg cagtgttaag aactgcgagg tgcagactac accgcgggcc agcaataatc       600
     agcagctgtg cgagcctacg aaggaagcta ccgcaaaaag aagtatggct gctcaaggag       660
     gcaatagcag cacccacaaa cgctcgaggg acgctgctcc tgagcaatgg aaaacaccgt       720
     ccaaaaagcc taagtacagc aaagctggag aagcgggagt cgaaaagcca acggcccaac       780
     agggtacctc cactaatgcc aagcaagatg gaattcagtc aaacagctgg actgtggtca       840
     aaggacgcaa accgctgcaa aagcgaacca gggccgacgc aattactgtt tctagcgtcg       900
     atggatgcag ctatgctgac atgttgcgag tcgttaagag cgacccaact ctaaagcatt       960
     tgagcgcaga tgtgcatgga ataaggaaaa cggcaaaggg cgacctttta ctacagttaa      1020
     acaggaaacc ggagcacagc gcggaggtgc tccaacaagc cgttggcaag gctctgggga      1080
     acagagcaat cgtaaaaacg ctgaccgaaa cggcaaccat cgagattcgc gacttggacg      1140
     aactggcgtg caaggaggag atcctggatg caattaacga agctgttaag gactgcccac      1200
     tatcgataga tgctataaaa tcgctccgac cagccttcgg tggccagcag agggccactg      1260
     tcgtgctccc tgtgggtaag gccagagccc ttctcgagct gtcgaaagtg cggattggat      1320
     gggttgtatg ccgaattcgt gcagtggagc aacctaaacg ctgctttaag tgcatggact      1380
     atggccactt tgcggttaac tgcaccagcg atgaaagctt aaaaagtgct tgcttcaggt      1440
     gcggggagtt gggccacatc tccaaaactt gcgtcaagcc ccccaagtgt ggcctctgcg      1500
     tccgaaaagg cgccaagcca actgaccacg cagcaggcag ctttaagtgc ccctcatatc      1560
     gggaagcggt ccaaaaaatg agatgctaag gctcctacaa ctcaacttga atcattgcgt      1620
     agctgcacag gacctactta cacagagtgt aagagaaaga cgaatagacg tagctatcct      1680
     cagtgagccg caccaccgca tgtccagctg cccaagaaca tgggcctcag atacgagagg      1740
     tcaagccgcg ctgtggatat gcgggaactc aacgactaag ctatcaaaag ttaagtcgtt      1800
     taatgggttc gtacgcgccc aatttggcag tctgtgggtg tacagctgct atctggcccc      1860
     cagcttgcag ctcaatgaat tcatagcagt gctcgatgaa ctcgtggagg atgtgagggg      1920
     acggcgtgcc attatagcag gagactttaa cgcatgggcg atggaatggg gtagtcaaag      1980
     gactaacgcc agaggtcgca gccttctgga atccttcgcg actctggacg tggctctgct      2040
     caacactgga aaccagttca ctttcagtcg ggctggttgc ggttccatag ttgacatcac      2100
     atttgtgtcc tcatcgctgt ttagggaggc aaggtggtgc atctgtgaca gctacacagg      2160
     cagcgatcat tcagctatac gcttcacaat cggagagcca ccgatcaggt caccatcttt      2220
     gcttcgggag gcttaccgcc tggacacctt tgacccgata gctttttcgg aggccattca      2280
     gtcattggcc acatctggca acgcagaaca aagagcttcc caaatggtgg aacaaatgcg      2340
     gatggcatgc aatgcaagca tgcagcggcg caaactgttc cgaaggcacc aagcgcctgt      2400
     gtactggtgg aacgacgaaa tatgtttaat tcgacgcact tgtatccagg cgagaagaaa      2460
     ctatcagcgt gcccgcggga ggcctacata cgatgctaga cagtcagagt accagacggc      2520
     aagaacgcaa cttaagaagg caatacgagc aagtaagcgt aggcacttcc tggagctctg      2580
     cgactccgct gaacttgatc cctggggcaa ggcgtataaa atagtagtca agaaaatata      2640
     cgccagtaag cagtcacagc ctacggatcg cgaggaacta aaggttatcg tggaaacact      2700
     ctttccaagt agactgagcc gtatgcttgg ctctggctct aacatagaca tcgaggagtc      2760
     acccagcgca cgcccgatac ttgccacaga agatgaaatc ctggcagctg ctgtaagcct      2820
     taggcccaac tctgcccctg gcccggacgg aatcccaaac agagcgttga agctagctct      2880
     tgccttgcat ccagatgcgt ttgccgagct gttcaatgtg tgcctgttgc agagaacatt      2940
     ccccgcaatc tggaagaaac agaacctagt tctgctaccc aagcctggca aaccgacgga      3000
     agagccatcg tcctacaggc ccatctgcct cctagataca ataggaaagg tgtttgaaaa      3060
     gcttctttgc tctaggctgg agaccgctat agctactggt ggcggccttt ctccaaacca      3120
     atttggcttc agaaaggcca gatcaacaac ggacgccttg agcaaagtag tggacctcgc      3180
     aacttcggct atcgaaggta ccaggtggaa acacggcgca aagcaatact gcatcatagc      3240
     gactctggat gttaaaaatg cgttcaacac ggcaaactgg gacatgatac tcgatgcgct      3300
     ggcacaatac aatatcccta aatatctgag agaaattatt aagagctact tcgaaggcag      3360
     ggcaataata tacaacacga gcgagggcga ccaaactcac ttagtgtctg ccggagtccc      3420
     ccaagggtca gtactggggc ctctcctatg gaatgcgatg tatgatggag tactgcgtct      3480
     agacctaccc gcaggctcgc ataccatcgg ctttgctgat gatgtagccg tcgtcaccat      3540
     aggaaaggag ctcaaggata cagaggatat gtgcagcgca agtatcagtt gcatcagaga      3600
     ttggctaaca gcagcaggac tcgaactagc tgcgcataaa actgaagccg tccttgtcag      3660
     cagtcgcaag agggtggaaa cggcccatat aaagatcggt agcaccacca tcgagtcaag      3720
     gagagcgata aagtaccttg gcgtcatgct ggatacaagg atgaccttcc gcgagcactt      3780
     ggaatatgtg cacaaaaaag ctgctgattc ctgcactgcc ttgtctagaa ttatgctaaa      3840
     ttcacgggga ccgaagcaac aacggcgcct tctcttgaca agcgtcataa ggtccatcat      3900
     cctctacgca gcgccaatct ggtcgagagc aatgaaaact cccagttaca gccgaggtat      3960
     ctgcgccacc taccgtctga gtgcaatccg agtcagctgc gcttttagga cagtctccga      4020
     agaagcggcg ctcgtcatag caggaatggt tcccctcgag gacctggtca cggaggccgt      4080
     agaacggagt accagaacac aaaccagaag ctcggacaga tccaatagca tcgctcgatg      4140
     gcaaataaag tggaataatt caacgaaggg acgctggaca cactctctca tcccggaatt      4200
     ggaaccgtgg atcaaccgta ggcatggtac tactaatttt tatctttcac agattctctc      4260
     tggccatgga tgtttccgca gctatttgaa gagatttggc catgaagaca ctgacgagtg      4320
     ttcctggtgc ggaagaggga tagtggaaga cgccaaccac gtaacattcg agtgcggacg      4380
     gttcctggag gagaggctga gtctcgagga aaaactaggc cgacctatta gagtggagag      4440
     catggttaat accatgctgg agtccgagac agcctggaac ctaattagtt cctttgcaac      4500
     aatcatgatg acggaactgc gtagagtcga gcgcagtaga aggagcacct accacgacta      4560
     aggtagagca gagtgcttgc gaagcaatgc tttacggccg taccgcaagc accatgctct      4620
     actttatcgc catctaaaat atgtaatata tttaagtaat ttaatgtaaa taaaagaata      4680
     caaaaaaaaa aaaaaa                                                      4696
//
ID   Waldo-2_AAe repbase;    DNA;    INV; 6241 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele2;
KW   Waldo-2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6241
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6241
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as R1_Ele2.
CC   [2] Consensus update and chracterization of target sequences.
CC   This consensus is generated from 30 sequences with >99% identity,
CC   and ~100% identical to the original sequence in [1]. Both sides
CC   are (AC)n microsatellites. Renamed as Waldo.
XX
FH   Key           Location/Qualifiers
FT   CDS           815..2338
FT                 /product="Waldo-2_AAe_1p"
FT                 /translation="MGSQGRLLTTGGDSGLEGGPLSMEVNNINVGETANPF
FT                 AKSGLPRSPPKQCQQQELEQQQLEHQQSEDELHEQRTREQERRDKSQSEQE
FT                 QRERQQQHQLQSAWKLPPRQSKVEAAKTVVDELREFVDKRHNVHKDIKDLV
FT                 ARIQGTLGSAVKDWRKVMQRIEAVETELAATKKALAAAVVQPEKTGIAPRK
FT                 DSKGKERSAGIGTTPSFTPKRHRSSPGDERQAVSKKPKNVNPKPADEVLRG
FT                 GPGDIPWQEVRNKKKRGKQESARKQRPIRKKAKCEAVVVKTSEDTYAEVLR
FT                 AMRTDPQLKEFSADVQKIRRTQTGDMLIELKKDSVNKSSTYKELTERVMGE
FT                 KVQVKAMCPEVTLQLRDLDWITTEEEVRTAIKEQCDLETVQMTVRLRRAPL
FT                 GTQAASIKLPVDAANKALEVGKIRVGCSVCPLKISQRPEGCYRCLEYGHLA
FT                 RNCEGPDRSKLCRWCGDEGHKAQDCNNKQRCLICKDKSRNRHATGGPKCPA
FT                 FKQARNSKPQWR"
FT   CDS           2326..5343
FT                 /product="Waldo-2_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="TAVEVTQLNLNHCDTAQQLLWKSVSESKCDVAILAEP
FT                 YRVPAGNGNWIADKAKTAAIWTMGRYPIQEIVFQADEGFVIAKLNDVYVCS
FT                 CYAPPRWTLDQFNEMLDELTDKLADRRPVVIAGDFNAWAVEWGSRLTNPRG
FT                 RSLLEALARLDVDLGNEGTTSTYRRDGRESIIDITFCSPVLTGGLNWRVCD
FT                 GYTHSDHQEVRYRIGGRTQCSQRASTPHEQMWKTKRFNEELFVEALRREEQ
FT                 VLNLRSEELTAAMVRACDIAMPRKVEPKYRRRPVYWWNETLGNLRKRCLQA
FT                 RRRMQRAKTDGEREERRVTLRAAKADLKREISLSKRTCFKELCRDANANPW
FT                 GDAYRVAMAKISGPAVPAETCPEKLQIIVDGLFPQHAPTVWPPTPYGQEGE
FT                 ERAIITNEELIEAAKKMKPKKAPGPDGIPNVALKAAITANPDMFRTSLQIC
FT                 LDEGHFPAQWKRQKLVLLPKPGKPPGEPGSFRPICLLDTLGKLLERIILNR
FT                 LMAFTEGERGLSEWQYGFRKGKSTVDAIKTVIDTADKARTKKRRGNRYCAV
FT                 VTIDVRNAFNSASWEAIAVALHKMKVPDYLCKILGSYFENRVLSYSTSEGQ
FT                 KTRSVNAGVPQGSILGPTLWNAMYDGVLTLRLPTGVKIVGFADDITLVVIG
FT                 DSLERVEVLATEAVDAVENWMYEKKLVIAHQKTELLLISNRKVVQKAEITV
FT                 GEHTIASKRELKHLGVMIDDRLNFNCHVDYACEKAARAVTALSRIMPNNSA
FT                 ICSSKRRLLSSVATSILRYASPAWGTAMKTKRNRVKLSSTYRLMAMRVASA
FT                 YRTISSEAVCVIAGMVPIGYVLEEDKECYEASSTRGARKIARADTMVKWQR
FT                 EWDTAEKGRWTYRLIPNLAKWVSRSHGEVNFHLTQFLSGHGCFKKYLHRFG
FT                 HAESPLCAECPVVEESPEHVIFECPRFAAERSEMTAVCGADVTVDNVVDRM
FT                 CSDEVMWNAVNMAVTKIMSLLQRKWREEQAGEPEVSLQPESPNRPRHPTGR
FT                 "
XX
SQ   Sequence 6241 BP; 1769 A; 1444 C; 1838 G; 1189 T; 1 other;
     gggttgcaaa atggtgagtc gacaaccagg aaggagcgtc caacatagct ctggtcctca        60
     caagccccta cctcacgctt ccacgggtct aacgatgaca aagaccgcca gctaagggtt       120
     gcgtacttag ctggtagtgc aacctgggca ctgttgtcct tctgacatca gctagagtga       180
     ggaggtgcca ggtggaagct tgggattttt accctttcca agcgaaactc atacatacag       240
     ccgtatggaa taccaccttt ggtacttcct tcgggaggtg gccgagcgtc tggtccatct       300
     gaccaggggc tcaagcatgg tctacctagg atgtggcggg ggttcatcag tgggctctgg       360
     tgaatctcta caaaaaacca catatctgta agtaaccctg aacaagcgac ctggtaccgc       420
     tttcaaagtg ccttagccca accattggag tgccaaccgg cacattagga tcgatgccag       480
     taagatccta attacggcat actggctgca aggacaagga caaggtcaag gactgtatca       540
     acacgacgtt atagagctga caatcgctct attccacttc cttagtaaga atgggtgaca       600
     ctattctgaa acggcaggtg ggctaatgga acggttgccc ccgtcccgtt aaaaccgtgg       660
     caggcctcct agtacgttca aagctcgcca ccttagctgg tggaagtagg ctcagatgga       720
     tattcctgac tagcgtcgat ctggctctga acccggtacc ccatgaagga ccgtgtcagc       780
     cctcgcgtgg acctcactgc aagcaaaggt acccatggga tcacaaggac gactacttac       840
     gacgggtgga gatagcggct tggagggggg acccttaagc atggaagtta acaacatcaa       900
     cgtaggtgaa acagcgaatc cgttcgcaaa aagtggcttg ccgaggtcgc caccgaagca       960
     atgccaacag caggagctgg aacagcagca gctggaacac cagcagagcg aagatgagct      1020
     gcacgagcag cgaacacgtg aacaggagcg gcgggataag tcgcaaagtg agcaggagca      1080
     gcgtgagaga cagcagcaac atcagctgca aagtgcgtgg aagttacccc cgaggcaatc      1140
     gaaggtggaa gcggcgaaaa ccgtcgtaga tgagcttcgg gaattcgtcg ataagaggca      1200
     caacgtgcac aaagacatta aggacctcgt ggcaaggatt caaggaaccc tcggatccgc      1260
     cgtcaaggac tggaggaaag tgatgcagag gattgaagct gttgaaaccg agttagcggc      1320
     gaccaaaaag gccctggcag ctgcggtagt gcagccggaa aaaaccggca tagcccctcg      1380
     gaaagacagc aaggggaaag aaaggtcagc gggaatagga actacgccaa gtttcacccc      1440
     caaaagacat aggtcgtcac caggagacga aagacaggct gtatccaaga agccgaaaaa      1500
     cgtaaatcca aaaccggcgg atgaagtgct cagaggggga cctggcgata tcccatggca      1560
     agaggtccgg aacaagaaga agagaggcaa acaggagagt gccagaaagc aaaggccaat      1620
     caggaagaag gcaaaatgcg aagctgttgt cgtcaaaact agcgaggaca cttatgctga      1680
     agtcttgcgg gccatgagga cggaccctca actaaaggag tttagtgccg acgttcagaa      1740
     gatcagacgc acccagacgg gagacatgct catcgagcta aaaaaagact cggtgaacaa      1800
     aagctcgaca tacaaagagc taaccgagag agtcatgggc gaaaaggtgc aggtgaaagc      1860
     catgtgccct gaagtgacac tccaattgcg ggatctggat tggatcacca ccgaagagga      1920
     agtgaggacc gccataaagg agcagtgcga tctggaaacg gtgcagatga cagtacggct      1980
     aagaagagca ccgcttggta cacaggcggc gtccataaag ctcccagtag acgcagccaa      2040
     caaagcgctg gaagtcggga aaattcgagt cggttgttca gtatgtccac tgaagatctc      2100
     ccagagaccg gagggatgct acaggtgcct ggaatacggc cacctggcac ggaactgcga      2160
     aggaccagac agaagtaagc tctgtagatg gtgtggcgac gaaggtcaca aggcgcaaga      2220
     ttgcaacaat aagcaaaggt gcctgatctg caaggacaaa agtcgcaaca gacacgcgac      2280
     gggaggccct aagtgtccgg ccttcaagca agcgagaaat tctaaaccgc agtggaggta      2340
     actcagctaa acctcaacca ctgtgacaca gcgcaacagc tgctgtggaa gtccgtatcg      2400
     gaatcgaagt gcgacgtagc tatccttgcc gagccgtatc gagtaccagc tggaaacggt      2460
     aactggatcg ctgataaggc gaagacagcg gcaatctgga cgatggggag gtatcctatc      2520
     caggaaatag tgttccaggc ggacgaaggc ttcgttattg caaagcttaa cgatgtgtac      2580
     gtgtgtagct gctacgcacc cccccgctgg acattggacc agttcaacga gatgctggac      2640
     gagctaaccg ataagctagc cgaccggaga ccagtcgtca tcgctggcga cttcaatgct      2700
     tgggcagttg agtggggcag ccgtctcacc aacccaagag ggcgtagtct actagaagcg      2760
     ctggcaaggc tggacgtaga cttgggtaac gaaggaacaa ccagcaccta ccgtagagat      2820
     ggccgggaat caataatcga catcactttc tgtagtcctg tgttgacggg aggcctgaac      2880
     tggagagtct gcgatgggta cactcatagc gatcatcagg aggtccggta tagaattggt      2940
     ggaagaacac aatgctcaca gagagcgagt acacctcatg agcagatgtg gaaaacgaaa      3000
     cgttttaacg aagagctttt cgtggaagcc ctcagaagag aagagcaggt tctgaacttg      3060
     agatcggagg agttaacggc tgcgatggta cgagcatgcg acattgccat gccacggaag      3120
     gtcgagccga aatacagacg tcgtccggta tactggtgga atgagacact tggcaacctc      3180
     cgcaaaagat gtctccaagc caggagacgg atgcaaagag ccaaaaccga tggtgagagg      3240
     gaagagcgaa gagtaacatt gagggcggcg aaagccgatc tgaaaagaga aatttcgctg      3300
     agcaagagaa cgtgcttcaa ggagttgtgt cgcgatgcca atgcaaatcc gtggggagat      3360
     gcatacaggg tggcgatggc caagatcagt ggtccagccg tacccgctga aacatgccca      3420
     gagaagttgc agattatcgt cgacgggttg ttcccacaac acgcgccaac ggtctggcca      3480
     ccgacaccgt atggccagga aggtgaagaa agagcaatca ttaccaatga ggagctcata      3540
     gaggcggcca agaaaatgaa gccgaagaaa gcgcctggcc ctgatggtat ccccaacgta      3600
     gcgttgaaag cwgctatcac ggccaaccca gatatgttcc ggacatcact ccagatctgc      3660
     ttagatgagg gacatttccc agcacagtgg aaaaggcaaa aactggttct gctaccgaaa      3720
     ccgggtaagc cccccggtga accaggctcg tttcggccga tatgtttgct tgacacactc      3780
     ggaaagctgt tggagaggat catcctcaat agactgatgg cgttcactga gggagagcgt      3840
     ggactgtcgg agtggcagta tggattccgg aaaggaaagt caacggtaga tgccatcaaa      3900
     acagtgattg acacagccga caaagcaagg acaaaaaaac gtagaggtaa ccgttactgt      3960
     gctgtcgtga cgatagatgt gagaaacgcc tttaacagtg caagctggga agccattgct      4020
     gtggcgttac ataaaatgaa ggttccggat tatctgtgca agatactagg aagctacttt      4080
     gaaaaccggg tcttgagcta cagcactagc gaaggacaga agacgaggtc ggtaaatgcg      4140
     ggagttccac agggctctat cctgggtcca acgttgtgga atgctatgta cgacggagtg      4200
     ctgacgctta ggctgccaac aggcgtcaaa atcgttggat ttgcagacga catcacgctt      4260
     gtggtcattg gtgactcact ggaaagggtg gaggttctcg ctacagaagc agtggacgca      4320
     gtcgaaaact ggatgtacga gaagaaactg gtgatagccc accaaaaaac ggagctgttg      4380
     cttatcagca atcgaaaagt ggtgcagaag gctgagatta cagtgggaga acacaccata      4440
     gcctcaaagc gggagctaaa acacctcggc gtaatgatcg acgatcggct gaacttcaac      4500
     tgccatgtcg attacgcgtg cgagaaagca gcaagggcag tcacggcgct gtccaggatc      4560
     atgccgaata actcggcgat ttgcagcagt aagcggaggc tattgtctag cgtggctacg      4620
     tcgatcctga ggtacgctag cccggcgtgg ggaaccgcaa tgaagacgaa gaggaaccga      4680
     gtcaagctta gcagcacgta taggctgatg gccatgcggg tagcgagtgc ctaccgaacc      4740
     atatcttcgg aggcagtatg cgtgattgcc ggaatggtcc ctatcggcta cgttttggaa      4800
     gaggataagg agtgctacga agctagtagt actagaggag cccggaagat tgcccgagcc      4860
     gacacgatgg tgaaatggca acgcgagtgg gataccgctg agaagggaag gtggacttat      4920
     cgccttattc caaatctggc gaaatgggtg agcagatccc atggagaagt caacttccac      4980
     ttgacgcagt tcttgtcagg tcacggctgc ttcaagaaat atctgcacag gttcggccac      5040
     gcagagtcgc cgctctgcgc tgagtgccca gtcgtagagg agtcgccgga acacgtcatt      5100
     ttcgagtgtc cacgttttgc tgcggaacgt agcgagatga cagcggtctg cggtgctgac      5160
     gtaaccgtag acaacgtagt ggatagaatg tgtagcgatg aggtgatgtg gaacgcggtg      5220
     aacatggcgg tgacgaaaat aatgtcattg cttcagcgga agtggaggga ggaacaagcc      5280
     ggtgaaccgg aagtcagtct ccaaccggaa tcgccgaacc gacctcggca cccaaccggt      5340
     aggtaagctt gatccaccgt cggggacaag accgagtaga tcgtggaaaa gccccggaaa      5400
     ttgtaggctt cgtggccgtg cggttagcgg cgtcagtcgt ttaggcatat tgtgccatga      5460
     agtgtgggtt cgattcccac tccagtcggt ggaaactttt cgtcaaacga aaaattcatc      5520
     attgggctac tgggtgtttc gtgttgtccg ttgcctaatg tttgtgattg ttcagtctgt      5580
     gcagccttga gctgaagacg gtgtaaattg tcttgccaaa ttggtcgtca gggcacctgt      5640
     gaaccggaag tcatccacca accggaatcg caggatcgac cttggcacct atccgggcag      5700
     catcggtacc ggaagaactt ccacctccgg ggaagtcttc gtcggggtag ggtagattca      5760
     ccgccgggga ctatccgaat agtgcgcgag aacctggagt gctaaatggc atgcgtccag      5820
     caccgagaga acttccttcg tcagggagtt tctggcaccc atggtatcgt gagccgaatg      5880
     gctgaatatg gcatgtttag atcacaaact aggaatacta acaaattatt aatgggagcc      5940
     gaagggctca gcatggcatg gattaggaac taacaaatta atgatggagc cgaagggctt      6000
     aatgaagggt gcgcgtagca tgtgtcgcct cttcttcgaa gtaataccgc aaggtggtgc      6060
     cggagaagaa ttctttacgg tgacggtgta cctaggagac tgttttttag tgggtaggcg      6120
     ccccattgcg aatcccacac agtgccaaac catacactgt ggcatgagca tgaacaaata      6180
     caggccagtc ttgagaagat ttttttaact cctagagatg catgaaaaaa aaaaaaaaaa      6240
     a                                                                      6241
//
ID   Waldo-3_AAe repbase;    DNA;    INV; 6674 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele6;
KW   Waldo-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6674
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6674
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as R1_Ele6.
CC   [2] Consensus update and characterization of target sequences.
CC   This consensus is generated from 30 sequences with >98% identity,
CC   and ~100% identical to the original sequence in [1]. Both sides
CC   are (AC)n microsatellites. Renamed as Waldo.
XX
FH   Key           Location/Qualifiers
FT   CDS           891..2339
FT                 /product="Waldo-3_AAe_1p"
FT                 /translation="MEESIIEIEEGAANPFAKGGLVRSPPSQLGQQQRNQE
FT                 EQQVQRQLQQQQQQQPREQQQQLQQQQQAQVSAWSKVPKLPRVVAAKKLVD
FT                 ELHEFVDKRSNVHKDIKTLVLKIQGTLGLAVKEWAAVAQKVESTEKELSAA
FT                 KTALEIRQVPIQQTAMPITFARETNAKRDKSQRTESVPFTPKRPRASPGDA
FT                 RPGGSKKHKDTRVNESGPANAATTKEGNDTPWKIVKAKNRKTKTKSRSEKQ
FT                 SLFKGRKRGEALIVKASDDSYEKVLRAMRTNPELEQLGADVRKVRRTRTGD
FT                 MILELKRDPMASSSSYKELAEKAMGNTVEVRAVCPEAVLECKNLDAISTDD
FT                 DVRVAMKEQCMLGEVQMQIRIRKGPSGMLIASIRLPIEAAVKALKTEKIKV
FT                 GWSVCPLSVSQKPEACYRCHEYGHLARFCKGPDRGNLCRRCGEEGHKAQAC
FT                 RKPPKCMICANGDNNNHVTGGLRCPAFMKATATKPQWR"
FT   CDS           2294..5389
FT                 /product="Waldo-3_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MPGLHEGDCYQTTVEVIQINLNHCDTAQHLLRQSVAE
FT                 YKCDVAIISEPYRVPAGDGNWIADNAKSVAIWTVGRYPFQEVVHRADEGFV
FT                 IAKINGVFFCSCYAPPRWSIDQFNEMLDKLTEELTDRRPVVIAGDFNAWAI
FT                 EWGSRFTNSRGSSLLEALARLNVDVANDGTTSTYRRDGRESIIDVTFCSPG
FT                 LSGSLNWRVSEEYTHSDHQALRYNIGSGRQLEARAIPSKERRWKTSQFDKE
FT                 VFVEALRLERNAQHATANELTAALARACDATMQREGKPRHGRRPAYWWNST
FT                 IADLRTSCFRARRMMQRARNDAERADRRPAYKAAKTALNKEIRLSKKACLE
FT                 ELCRNANSNPWGDAYRVAMAKLKGPAVPPDRCPEKMKTIIEALFPRHEPTS
FT                 WPSTPYGAQDNDEEEAQVTNDELIAVAKALKTRKAPGPDGIPNVALQAAIQ
FT                 ENPDMFRIVLQKCIEEGNFPDIWKRQKLVLLPKPGKPPGDPSAYRPICLLD
FT                 TVGKVLERVILNRLTKYTEGENGLCDMQFGFRKGRSTVDAIRTVVEAMDTA
FT                 RKQKRRGNRYCGVVTLDVKNAFNSASWAAIAESLHRLEVPEYLCKILRSYF
FT                 QNRTLIYETDAGKRCTTVTAGVPQGSILGPTLWNAMYDGVLKLSFPRGVKI
FT                 VGFADDVVLVVIGESLEEVEILATEAVDAVEEWMRGKKLVLAHHKTEVVMI
FT                 SNRKAVQKARISVGQCTIDSKREVRHLGVMIDDRLSFNSHVDYACERAVKV
FT                 ISALSRIMPNNSAISSSKKRLLASVSTSVLRYAGPVWVTALQTKRNRSRLN
FT                 STFRLMAMRVASAYRTISSEAACVIAGLIPISLQLEEDSECYRDRRTRGIR
FT                 KRARDETMRKWQQQWDSAENGRWTHRLIPCLSTWVNRKHGEVNFHLTQFLS
FT                 GHGCFKKYLNRFGHARSPLCTGCGDVDETPEHVVFECPRFEHERAEMTSVV
FT                 GNDVNVHNIVQRMCADEEKWDAVNRTIVQMMSLLQRRWREEQRHSTQRTAH
FT                 GSESLGQPESSDRPWRLTSQPVEESI"
XX
SQ   Sequence 6674 BP; 1837 A; 1652 C; 1957 G; 1228 T; 0 other;
     gggttgcaaa atggtgagtc gacaaccagg aaggagcgtc caacatagct ctggtcctca        60
     caagccccta cctcacgctt ccacgggtct aacgatgaca aagaccgcca gctaagggtt       120
     gcgtacttag ctggtagtgc aacctgggca ctgttgtcct tctgacatca gctagagtga       180
     gggggtgcca ggtgggagct tgggattttt accctttcca agcgaaactc atacatacag       240
     ccgtatggaa taccaccttt ggtacttcct tcgggaggtg gccgagcgtc tggtccatct       300
     gaccaggggc tcaagcatgg tctacctagg atgtggcggg ggttcatcag tgggctctgg       360
     tgaatctcta caaaaaacca cagatctgca agtagccctg aacaagcgac ctggtaccgc       420
     tttcaaagta ccttagccct ctggagtgcc aaccggcaca tcaggatgga tgccagtaaa       480
     atcctgatta tggtatactg gtcacggcgc agaacaacgg acaggacacg gattacggat       540
     tacacaccac attgcgacac agagctgaca gtcgtgttat tctattcccc gagtaaggat       600
     gggtgatacc aacttgaaac ggcgagtagg ctaatggtgc gattgccccc gtcccggtaa       660
     aaccttggca ggcctctgga tacgttcgga tcccgtccat cttaagtgat gagtactagg       720
     ctcggatgac taaaccccga tctacgccga tccggctctg aacacgattc tcataaggga       780
     tcgtgtcaac ccttgcatgg cctccctgct tgcaaagata accatgggat catgaaaggc       840
     gactacgtac ggcgggaaat gatagcggcc cagagggggg accctgaaga atggaagaga       900
     gtataattga gatcgaagaa ggcgcggcga accctttcgc taaaggtggc ttagtacggt       960
     caccaccatc gcagctaggg caacagcagc gcaatcagga ggagcagcag gtacagcgac      1020
     agcttcaaca gcagcagcag cagcagcctc gagagcagca gcaacagctt cagcagcagc      1080
     aacaggctca ggtcagtgca tggtcgaagg tgccaaagct accgagagtt gtagcagcca      1140
     agaaactggt ggacgaattg cacgagttcg tcgataaaag aagtaatgtg cacaaagaca      1200
     tcaagacttt ggtgttgaag atccaaggaa cccttggact agctgtcaag gaatgggcgg      1260
     ccgttgcaca gaaagtggaa tcgactgaga aggagttgtc ggcggccaag actgccttag      1320
     aaataaggca agtgccgatt caacaaacgg cgatgccaat tacttttgcg agggaaacca      1380
     acgcaaagag ggacaaatcc cagaggacgg agagcgtgcc cttcacaccg aagaggccaa      1440
     gagcatcacc aggagatgca agaccgggtg gttccaagaa acacaaggac acccgcgtca      1500
     acgagtcagg cccagcgaac gcagcaacca ccaaggaagg caacgatacc ccatggaaaa      1560
     tcgtcaaggc aaaaaatcgg aagacgaaaa ccaagagcag gtccgaaaaa caaagcctct      1620
     tcaagggccg gaagagaggc gaggcgctta tagtcaaggc aagcgatgac tcgtacgaga      1680
     aggttctccg tgcaatgcgg acaaacccgg agctcgaaca gctgggtgca gacgtgcgga      1740
     aagtcaggcg cacccgcacc ggagatatga tcctggagct aaaacgagac ccgatggcca      1800
     gcagctcttc ctacaaagag ctcgccgaga aagccatggg taatacggta gaagtgagag      1860
     ccgtgtgtcc ggaggcagtc cttgaatgca agaacttgga cgcaatctct acggacgacg      1920
     atgtaagggt tgccatgaaa gagcagtgca tgctaggaga agtgcagatg cagatccgca      1980
     taaggaaggg gccatccgga atgctaatag catcaattag gcttccgatt gaagcggccg      2040
     tcaaggcact taaaacggag aagattaaag taggctggtc ggtatgtcca ctgagcgtct      2100
     ctcagaaacc ggaagcatgc tatagatgcc acgagtacgg ccatctggct agattctgca      2160
     aggggccgga cagaggtaat ttatgcagaa ggtgcggaga agaaggccac aaggcgcaag      2220
     cctgccggaa gcctccaaag tgcatgatct gcgctaacgg agataataac aaccacgtta      2280
     caggaggcct gcgatgcccg gccttcatga aggcgactgc taccaaacca cagtggaggt      2340
     aattcaaatt aacctcaacc actgtgacac agcacaacac ttgctgaggc aatctgtggc      2400
     ggagtacaag tgcgatgtgg ctatcatctc ggagccatac cgtgtcccgg ccggcgatgg      2460
     gaactggata gcagacaacg caaaatcagt ggcgatatgg acggtgggaa gatatccttt      2520
     ccaggaagtg gtacatcgtg cagatgaagg ctttgttata gccaaaatta acggagtctt      2580
     cttctgtagc tgctacgcac ccccgcgatg gtctattgac cagttcaacg agatgctcga      2640
     caagctgact gaagagctca cagaccgcag accagtcgtc atagccggcg atttcaacgc      2700
     gtgggccata gaatggggca gtcgcttcac caactcaaga gggagcagtc tactggaggc      2760
     cttggcaagg ctaaacgtcg atgttgccaa cgatggtacc accagcacat accgtcggga      2820
     tggtcgagag tcaattattg acgtaacttt ctgtagccct gggctgtcag gaagtttgaa      2880
     ctggcgagtg agtgaggagt atacgcacag tgaccaccaa gcgcttcggt acaatattgg      2940
     tagcggacgg cagttggaag cacgtgcgat cccttcgaaa gagcggaggt ggaaaacgtc      3000
     gcagtttgac aaggaggtgt ttgttgaggc gttgagactg gagcgcaatg ctcaacacgc      3060
     tactgcgaat gagttgacag cggcattagc acgagcgtgc gatgcaacca tgcagaggga      3120
     aggtaaaccg cgacatggtc gccgcccagc ttactggtgg aactcgacga ttgccgacct      3180
     gcgtacaagc tgctttcggg ctaggagaat gatgcagaga gcccgcaacg acgctgaaag      3240
     agcagatcga agaccagcgt acaaggcggc gaaaaccgct ctcaacaagg aaattcggct      3300
     cagcaagaaa gcctgtctgg aggagctctg tcgcaacgcc aattcaaacc cgtggggtga      3360
     cgcctacaga gttgcaatgg cgaagttgaa gggcccagct gtaccacccg ataggtgtcc      3420
     ggagaagatg aagaccatca ttgaagcgct attcccccgg cacgaaccga cgagctggcc      3480
     gtccacacct tacggagctc aggataacga cgaagaagaa gcccaggtaa cgaacgatga      3540
     gctgatcgcg gtggcgaaag ccttaaaaac caggaaggct ccgggaccag acggtatccc      3600
     caacgtagct ctgcaagcag caatccaaga aaacccagat atgttcagga tcgtactgca      3660
     aaaatgtatc gaggagggta acttccccga catttggaag cgacaaaagc tggtgctgct      3720
     gcctaaacca ggcaagcctc ctggagatcc ttcagcatat agaccgatat gtctgctgga      3780
     cacagttggc aaagtgctgg agcgagtaat cctaaacagg cttacgaaat acacggaggg      3840
     agaaaacggc ctgtgtgaca tgcagttcgg ctttcggaaa ggtagatcaa ccgttgatgc      3900
     catccgaacg gtcgtggaag ctatggatac ggcgcggaag caaaagagga gaggaaatcg      3960
     gtactgcggt gtggtcactc tagacgtaaa aaatgccttc aacagtgcca gttgggctgc      4020
     gatcgccgaa tcgctgcaca gattggaggt ccccgagtat ctttgtaaga ttttgaggag      4080
     ctactttcaa aatcgtacac tgatctacga aacagacgct gggaaaaggt gcacgacagt      4140
     cacagcgggc gtcccacagg gttctattct tggcccgact ctctggaacg ctatgtatga      4200
     tggagtgttg aagctgagct tcccccgggg tgtgaagatc gtcggcttcg cggatgacgt      4260
     ggtgctcgta gtcatcggcg aatcactaga ggaagtagag atacttgcta ccgaagcagt      4320
     agacgccgtg gaagaatgga tgcgagggaa gaagcttgtg ttagcccatc acaaaaccga      4380
     agttgtgatg ataagcaacc gaaaggcagt gcagaaggcg agaatctcgg ttggacagtg      4440
     taccatcgac tcaaagcggg aagtcagaca cctgggagtg atgatcgatg atcggctgag      4500
     cttcaacagc catgtcgatt atgcatgtga gagggccgtg aaggtgatat cagctctatc      4560
     ccggatcatg cccaacaact cagcgatcag cagcagcaag aagcgactac tggcgagcgt      4620
     gtcgacgtcg gtactcagat acgctggccc cgtgtgggtg acagcactgc agacgaagag      4680
     gaaccgctcc cggctgaaca gtacgttcag actgatggcc atgcgtgtgg cgagcgcgta      4740
     tcgtacgata tcatcggagg cagcctgtgt gattgcagga ttgatcccta taagccttca      4800
     actcgaagag gacagcgagt gctacaggga ccgacgcacg cggggaattc ggaaaagagc      4860
     ccgggatgaa accatgagga aatggcaaca gcaatgggat agcgctgaga acggtagatg      4920
     gacccaccgt ctaattccgt gcctgtcgac gtgggtaaac agaaaacacg gagaagtgaa      4980
     tttccacttg acgcagtttt tgtctggcca tggctgtttc aagaaatacc tcaataggtt      5040
     tggacacgca agatcgccgt tatgcaccgg gtgcggcgat gttgacgaaa cccctgagca      5100
     cgtggtcttc gaatgtccgc gcttcgagca tgagcgagcc gagatgacat ccgtcgtcgg      5160
     caatgacgtt aatgtgcaca atatcgtcca acgaatgtgt gccgacgaag agaaatggga      5220
     cgcggtaaac agaactatcg ttcagatgat gtctctttta caacgaagat ggcgagagga      5280
     gcagcggcac tctacacagc ggacagcaca tggctctgaa tcgttggggc agccggaatc      5340
     gtcggaccga ccttggcgct tgacaagtca gcctgttgaa gagagcatat gaaggagacc      5400
     aacgggcgcg accggagtag gctagatcct ccgccgggga ctagaccgag tagagcgggc      5460
     gtagcgtaat atcggtaata agtcgtcaag gcgcctgcaa accggaagtc atcctccaac      5520
     cggaattgca ggaccgacct cggcacttac cgaccaacat cgcgtcggag taggctatgt      5580
     ccttccgccg gggactagcc gagtagatcg cgaaacagct ccggcaaatg gtagtcgggg      5640
     cgcctgtgaa ccggaagttt cccaccaccg gaatcgcagg accgacctcg gcatcagccc      5700
     ggtcagcttc ggagtaggtt aagttcaccg tcggggacta actgagtaga acgcgtagtt      5760
     gcaccggcaa atggtcgtcg gggcgcctgt gaaccggaag tttccctcca ccggaatcgc      5820
     agaaccgacc tcggcatcag cccggaaagc atcggttcgg gagatcttcc gccgtcgggg      5880
     aaatcttcgt cggagtagga tagatccacc gtcggggact attctgagta gtccgtagcg      5940
     agtcaccggc ttaagtcgtc ggggcaccag tgaaccggaa gccatcctcc aaccggaatc      6000
     gctggatcga cctcggcact tcaccggtca gcagcagtga tgcgggaaca aacgcgtaac      6060
     gttatcggtt tcgggagaca ttcctacgtt aggaactctc cgctggagta ggctagctcc      6120
     accgtcgggg actatgccga gtagcgatcg tgacaaccac cagttttggg tcgtcggggc      6180
     gccagtgaac cggaagctac cctccaaccg gaatcgctgg accgacctcg gcatccaact      6240
     ggtccaacct ggagaactcg agaatcggcg gattaacagc aggcgcaaca gttgcgcagg      6300
     gctctggcga gatgtcagcc ccaaacacgt cgcagcagag caacgaagcg tagcaatgac      6360
     agaagcggta gtagaaacat ggccctggcg cgatgccagc agtacgaaga gagcaaggga      6420
     agtacaggag cgtaagaagc aaggagcagt gcagtgctta gcacaatagc ctcccccatg      6480
     aagtaatgcc aagaggcagt tccgggggga atggctcgtg ggcgaaggtg gactttagtc      6540
     ggtataaagg agtccgacac tctggcgcac gatggacgaa ttcgatatga ctagcctcca      6600
     tatcgaacgt gaaacgctgg gttagttcgt aaatgtaatt taccaccttc taaaactaaa      6660
     aaaaaaaaaa aaaa                                                        6674
//
ID   Waldo-4_AAe repbase;    DNA;    INV; 6514 BP.
XX
AC   .
XX
DT   05-OCT-2010 (Rel. 15.10, Created)
DT   05-OCT-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; R1_Ele3;
KW   Waldo-4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-6514
RG   Nene, V., Wortman, J.R., Lawson, D., Haas, B., Kodira, C., Tu,
RG   Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., et al;
RT   "Genome Sequence of Aedes aegypti, a Major Arbovirus Vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6514
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Direct Submission to Repbase Update (05-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   [1] Originally named as R1_Ele3.
CC   [2] Consensus update and characterization of target sequences.
CC   This consensus is generated from 30 sequences with >98% identity,
CC   and ~98% identical to the original sequence in [1].
CC   Sequence-specificity is not so tight compared to other Waldo
CC   families in Aedes aegypti, but their 5' ends are frequently
CC   flanked by (AC)n microsatellites. Renamed as Waldo.
XX
FH   Key           Location/Qualifiers
FT   CDS           891..2285
FT                 /product="Waldo-4_AAe_1p"
FT                 /translation="MEQIIDLDGESSGGNEDAIVFARSGKMQRSPVIPQTV
FT                 AASTSRCSTPSELPGNQRDAGFLSQVLTPKSGSSTAQDDRQHDKSELSEVK
FT                 RKVNELYEFVKTKNNVHLRIKQLVTSIKSAVTAAERGQKELRSRAEKAEKA
FT                 LTSVNATAVEQETPRSNPTTRTEKRTRDTPGEEEDPKKQRSGNECVSEQNG
FT                 SGWRTVKGQKEKNTARKERKRQKKEPKKKEKQRSPRERFRGDALVIEASDK
FT                 TSYAAILRRVREDPELKELGENVVRTRRTQKGDMLFELKKDPSIKSSACRE
FT                 LVAKSLGNEASVRALSQEAVIECRELDEITTEDDVRGALLSQCNLEEAPQS
FT                 IRLRRAYGGMQIATIRLPVAAAKKLVEAGKIKVGWSVCPLKLIPRETNPVE
FT                 RCFKCMDFGHRAINCKGPDRSEHCRKCGEKGHVGRDCLKSPRCMLCKVEEG
FT                 NAHTTGGFKCPKYQKAKAGQ"
FT   CDS           2288..5314
FT                 /product="Waldo-4_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MMMEITQVNLNHCDAAQQLLWQSTTETKCDIAIIAEP
FT                 YRVPPDNGNWVADRAETTAIQVMGRFPIQEVVERSYEGFVIVKINGIFVCS
FT                 CYAPPRWTLEQYTQMLDVLTDKLIGRTPVIIAGDFNAWAVEWGSRLTNARG
FT                 YSLLEALAKLDVRLCNDGLASTFRKDGRESIIDVTFCSPSLVTNMNWRVSE
FT                 EYTHSDHQAIHYCVGQRSCAVWQRRNGERRWKTKHFDKDLFVEALRAVSDA
FT                 PNMDAGELTEALARACDATMPRKLEPRNQRRPAYWWNDRLSTLRAACLRAR
FT                 RRVQRARSEASMEERKVTYRLARAAFKREISTSKTNCYKELCREADANPWG
FT                 NAYRVVMAKIKGPVTPAEMCPDKLKAIVNGLFPTHAPTAWPPTPYADVDEE
FT                 NAGIQVSNAELITVAKGLKLNKAPGPDGIPNVALRAAILAFPDIFRTALQK
FT                 CLAEGCFPDRWKVQKLVLLPKPGKPPGDPASYRPICLLDTLGKLLEKVILG
FT                 RLTIYTEGENGLSKRQFGFRKKTSTVDAVRAVIACAEKAAKQKRRGNRYCA
FT                 VVTIDVKNAFNSASWEAIAAALHRMRVPGYLCKVLQSYFQNRVLVYDTNQG
FT                 RMSIEVTAGVPQGSILGPTLWNMMYDGVLTLSLPNGVEIVGFADDVVLAIT
FT                 GETAEEVEMLTAESLDTIESWMTGVKLQLAHHKTEVVLVSNCKAVQQLEIN
FT                 VGGHAIPSKRSLKHLGVMVDDRLNFNSHVDYACEKAAKAANTVARIMPNIG
FT                 GPRSSTRRLLATVSSSILRYGVPAWAAALGTKRNRDKLAGTFRLMAIRVAS
FT                 AYRTISSEAVCVIAGMIPICITLAEDIACYQQRDTRNVRNTIRLDTMARWQ
FT                 QEWDNSEKGRWTHRLIPNVSVWTTRKHGEVNFFLTQFLSGHGCFRKYLHRF
FT                 GHAESPHCPACPNIEETPEHVIFDCPRFRDIRSEMMPETASVLNPDNIVQN
FT                 MCQHESTWNAVNRGITAIMSLLQRRWREDQRAPGRDRSRLDPPSGTRPSRA
FT                 GVA"
XX
SQ   Sequence 6514 BP; 1836 A; 1590 C; 1902 G; 1186 T; 0 other;
     gggttgcaaa atggtgagtc gacaaccagg aaggagcgtc caacatagct ctggtcctca        60
     caagccccta cctcacgctt ccacgggtct aacgatgaca aagaccgcca gcaaagggtt       120
     gcgtactttg ctggtagtgc aacctgggca ctgttgtcct tctgacatca gctagagtga       180
     ggaggtgcca ggtgggagct tgggattttt accctttcca agcgaaactc gtacatacag       240
     ccgtatggaa taccaccttt agtacttcct tcgggaggtg accgagcgtc tggtccatct       300
     gaccaggggc tcaagcatgg tctacctagg atgtggcggg gtttcatcag tgggctctgg       360
     tgaatctcta caaaaaacca catatctgca agtaaccctg aacaagcgac ctggtaccgc       420
     tttcaaagta ccttagccct ctggagtgcc aaccggcaca tcaggatgga tgccagtaaa       480
     atcctgatta tggtatactg gtcacaacgc agaacaacgg acaggacacg gattacggat       540
     tggatacgtc gactaacagt cgtgggctgg cagcgtactc tactgttccc tgagtaagga       600
     agggtgacac caacttgaaa cggcgaatag gactatgagg aaactgcctc cgtcctgata       660
     aaaccttggc aggccttcgt gtacgttcga aactcgtcac caacctcggt gagtagtagg       720
     ctcagatgta acattcctga cttacgccga tccggctctg aacacaaccc ccatgaagga       780
     ttgtgtcaac cctagcatgg cctccctgct tgcatagaca accatgggat cacgagaggc       840
     gactatttac aacgagtaga gatagcggct cgaagggggg acccaatcga atggagcaaa       900
     taatcgattt ggatggagaa tctagtggag ggaacgaaga cgcgatagta ttcgcaagga       960
     gcggaaagat gcagagatcg ccagtgatac cacagacggt agcagccagc actagcagat      1020
     gcagcacacc gagtgagcta ccgggaaacc agcgggatgc aggcttcctg agtcaagtgc      1080
     tcacaccaaa gtcggggagt agcaccgctc aagacgaccg gcagcatgat aagtcggagc      1140
     tgtcggaagt aaagaggaag gtcaatgaac tctatgagtt cgtcaagacg aaaaacaacg      1200
     tccacctcag aatcaagcag ctggtcacga gcatcaagtc tgccgttaca gccgcagaac      1260
     gcgggcagaa ggaattgcgg agtagagcgg aaaaagccga aaaagcatta acttcggtga      1320
     atgcaacagc cgttgaacag gagacgccta ggagcaatcc gaccacccgc acggaaaaaa      1380
     gaacgaggga tacaccagga gaggaggaag atcccaaaaa gcagagaagc ggcaatgagt      1440
     gcgtcagtga gcagaacggc agtggatggc gcaccgtgaa aggtcaaaag gagaagaata      1500
     cagctcgtaa ggagaggaag cggcaaaaaa aggaaccgaa gaagaaagaa aagcaacggt      1560
     cacctcgcga gaggttcagg ggcgatgctc ttgtcattga ggcaagcgat aagacaagct      1620
     acgcggcgat tctcaggaga gtgagggagg acccagagct taaggagctg ggtgaaaacg      1680
     tggtgagaac caggcgcacc cagaaaggtg acatgctctt tgagcttaaa aaagatccgt      1740
     cgatcaagag ttcggcctgc cgagagctcg tcgcgaagtc gctgggcaac gaggcaagcg      1800
     tgagagcctt atcccaggag gcagtgatcg aatgtagaga actggacgag atcacaacag      1860
     aagacgacgt gaggggtgca ctgctatctc aatgcaacct ggaagaagca ccacagtcca      1920
     tccggctgag gagagcttac ggaggtatgc aaatagcgac gatccgatta ccagtcgcag      1980
     cagccaaaaa actcgtcgag gctggtaaga tcaaggtggg atggtcggtt tgcccgctga      2040
     aactgatccc tcgggagaca aatccggtgg agagatgctt caaatgcatg gatttcggcc      2100
     accgggcaat aaactgcaaa ggcccggaca ggtccgaaca ctgcaggaaa tgtggtgaaa      2160
     aaggtcacgt tggcagggac tgcctgaagt cacctaggtg catgctgtgt aaggtggagg      2220
     aaggtaacgc ccatacgacg ggtggcttca agtgccccaa atatcagaag gcgaaggcag      2280
     ggcagtaatg atgatggaga taacgcaggt gaacctcaat cattgcgacg ccgcacaaca      2340
     actgttgtgg cagtcgacaa cagaaacaaa gtgcgacatt gcgatcattg cagaaccgta      2400
     tcgggttcct cccgataacg gcaattgggt agcagacaga gcagagacga cggcgattca      2460
     agtaatgggc cgattcccta tccaagaagt tgtcgaacgc tcatacgagg gcttcgtgat      2520
     cgttaaaatt aacggaatct tcgtgtgtag ctgttacgcc cccccgagat ggacactgga      2580
     gcagtacacc cagatgttgg atgtgctaac cgacaagctg atcggtcgaa cgccggtaat      2640
     aatagcagga gacttcaatg cttgggccgt ggagtggggt agcagactga ccaacgcgag      2700
     aggatacagt ttgctggaag ctctagcgaa gctcgacgta aggctgtgca acgacggtct      2760
     cgctagcaca tttcgcaaag acggtaggga gtccatcatc gacgtgacct tctgcagccc      2820
     gtcgctggtc accaatatga actggagagt tagcgaagaa tacacccaca gtgaccatca      2880
     agcgatccac tactgcgttg gccagagaag ttgtgcagta tggcagagga ggaatggaga      2940
     acgaaggtgg aagacgaagc atttcgataa ggatcttttc gtcgaagcac tccgagcagt      3000
     aagcgacgct ccaaacatgg atgcaggaga gctgacagaa gcgttggcga gagcgtgtga      3060
     cgcaactatg ccgagaaaat tggagccaag gaatcaacgg cgtcctgcat actggtggaa      3120
     cgacagactc agcacccttc gcgcagcctg cttaagagcc agaagacgcg tgcagagagc      3180
     tagatccgaa gccagcatgg aagagcgtaa agtgacctac cgactggcca gagccgcgtt      3240
     caaacgggaa atatcgacga gtaaaacgaa ctgctacaag gagttgtgcc gggaagctga      3300
     cgcaaatccc tggggcaacg cctatcgagt agtgatggcg aagatcaagg gcccagttac      3360
     cccagctgaa atgtgtcccg acaaactgaa ggcgatagtg aacggtctct ttcctacgca      3420
     tgctccaaca gcgtggccgc ccacaccgta cgctgacgta gatgaggaaa atgccggtat      3480
     acaagtgtct aacgccgagc tgataacggt tgcgaaagga ttgaagctga acaaagctcc      3540
     cggaccagat ggtatcccta atgttgcgct aagggcagca atcttggcgt tcccagacat      3600
     attcaggaca gcgttgcaga agtgtctagc ggaaggctgc ttcccagaca gatggaaggt      3660
     gcagaagctg gtgttactgc caaaaccggg aaaaccgcca ggagatcctg cttcatatag      3720
     accaatatgc ttgctggata ctcttggcaa acttttggag aaggtcatcc tcggcaggct      3780
     gacgatctac acggaaggcg agaacggatt gtcgaaaagg cagttcggat tccgtaaaaa      3840
     gacttcgacg gtggatgctg ttcgggcagt catcgcgtgc gcggagaaag cggccaagca      3900
     gaagaggaga ggcaatcgat actgcgcagt ggtaacaata gacgtcaaga acgcgttcaa      3960
     cagtgccagt tgggaggcta tcgccgcagc cctacacaga atgcgggttc ccggatatct      4020
     gtgtaaagtt ctgcaaagtt acttccagaa ccgggtactg gtctacgaca cgaaccaggg      4080
     acggatgtca attgaagtca cggcgggagt tccacaagga tccatacttg gtccaacatt      4140
     gtggaacatg atgtacgatg gagtgctaac cttgtcactg ccgaatggag tcgagatcgt      4200
     cgggttcgca gacgacgtcg ttcttgcgat aactggtgag actgcggagg aggtggagat      4260
     gctgacggcg gaatcgctag acaccatcga atcgtggatg actggagtca agctgcagtt      4320
     ggctcatcat aaaacggagg tggtgctggt cagcaactgc aaggcggtac agcagttgga      4380
     aatcaacgtc ggagggcacg caatcccatc gaagcgctct ctaaagcatc tcggagtaat      4440
     ggtcgacgac aggctaaact tcaacagcca cgtagactat gcctgcgaaa aggcagcgaa      4500
     agctgctaac accgtagcca ggatcatgcc caacattgga ggaccaagaa gcagcacgag      4560
     gcgtcttcta gcgaccgtat catcgtctat actgaggtat ggagtcccgg cttgggctgc      4620
     agcgttggga accaaacgta atcgagataa gctggcaggt acgttccggc tcatggctat      4680
     acgggttgcg agtgcctacc gcactatatc atcggaggca gtgtgcgtta tcgccggaat      4740
     gatccccatc tgcatcactc tggctgagga catcgcatgt taccagcaaa gggacacacg      4800
     gaatgtgagg aataccatta ggttggacac aatggccagg tggcagcagg agtgggataa      4860
     ctcggagaaa ggaaggtgga cccacaggct cattcctaac gtgtcggtgt ggacgaccag      4920
     aaaacatgga gaagttaact tcttcctgac ccagtttctg tcaggccatg gatgcttccg      4980
     gaaatatctg cacagattcg gacacgcaga atctccacat tgtccggcct gtccaaatat      5040
     cgaggagaca ccggagcacg ttatattcga ctgccctcga ttcagggata tacgaagcga      5100
     gatgatgcca gaaaccgcaa gcgtcctaaa tccggacaac atcgtgcaga acatgtgcca      5160
     gcatgaaagc acctggaatg cggtgaacag gggaataacg gcgattatgt cgttgctgca      5220
     aaggagatgg cgtgaagacc agagagctcc gggtcgcgat cggagtaggc tagatcctcc      5280
     gtcggggact agaccgagta gagcgggcgt agcgtagtat cggttaatag tcgtcggggc      5340
     gcctgcaaac cggaagccat cctccaaccg gaattgcaga accgaccctg gcacttggcc      5400
     gaccaacgtc gagtcggagt aggctgagtc caccgccggg gtccagctga gtaattcgcg      5460
     aaatagcacc ggcaaatggt cgtcggggcg cctgtgaacc ggaagtttcc ctccaccgga      5520
     atcgcaggac cgacctcggc atctgcccgg ccagcttcgg agtaggctaa gtccaccgcc      5580
     ggggactagt tgagtagatc gcgttgttgc accggcaaat gatcgtcggg gcgcctgtga      5640
     accggaagct tccctccacc ggaatcgcag gaccgacctc ggcatctgcc cggatagcat      5700
     cggttcggga gatcttccgc cgccggggaa atcttcgtcg gagtaggata gatccaccgc      5760
     cggggactac tctgagtagt acgtagcgta tcaccggctt gagtcgtcgg agcgccagcg      5820
     aaccggaagc catcctccaa ccggaatcgc tggaccgact tcggcactcc accggcctgt      5880
     atcgaatcat gaagaagcgc gtagccggag taggctagct ccaccgtcgg ggactaagcc      5940
     gagtagcatc gatcgtcaca aaccagtttt gggtcgtctg ggcgccagtg aaccggaagt      6000
     catcctccaa ccggaatcgc tggaccgacc tcggcatcca actggtcaac aaggagagct      6060
     cgaacagcag cagcggagaa cgagtcgtcg tagagcaacg aagtgcacat gagcgtccag      6120
     tagaagatca acagagctct gacgcgaggc cagcccaagg gaagtatgcg tcgtcgcaca      6180
     gaaagctgtc caaagtcccg gcgagatgtt caaccgccaa ttgggcaaaa cgctccaaca      6240
     gcgaactagc agaacagtta gaggctgaga ttgaagaagt gcatgagcac agaagtgcat      6300
     gagcacagcc ctcccccgat gaagttgcct gatgtagttc cgggggggat cgaggcacag      6360
     gagcagtagg gaaagttttt tagtggttaa gcacgcctaa cgtgagtccc acaccgtgcc      6420
     aacacacaac aggcctggct tttgaagctt ttttgtaccc tactataaaa aaaaaaaaaa      6480
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa                                  6514
//
ID   Waldo-5_AAe repbase;    DNA;    INV; 6404 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Waldo-5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-6404
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1462-1462 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >98%
CC   identity. Both sides are (AC)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           833..2290
FT                 /product="Waldo-5_AAe_1p"
FT                 /translation="MGSQRRLCTTDEDSGSEGGPTKMESIDDTKAVGEDAN
FT                 AFARSGRVARSPVTPLDTVASTSQVHSEPQATQQERTLLNRVFTPNSSSST
FT                 THNESRLEKSSLADIRRKVNELYEFVKERNNVHLKIKHMVTSIRSAVSAAE
FT                 REQNALRMRAETAEKALKEAAERPTTDVQETPRSHQNTRSEKRFRESPGEQ
FT                 EDAKKHKNEKKGVNNQRDAGSEGEWRIVGSQQKKKKNRKVKEGKKPEQKKK
FT                 ETRQPPRLRYKGDALVVEANDKTTYAALLKRVKEDPELKELGENVVKTRRT
FT                 QKGDMIFVLKKDPSVKSTAYKELIAKSLGDEANVRALSQEAVVECRDLDEI
FT                 TTEEDLKWALAEQCNLEGQMSMRLRKSYGGTQTAAIRLPVDAANKLVALGT
FT                 IKVGWSVCPLRLVPRVAKQMERCFKCRGFGHQSRNCKGPDRSDLCWNCGGN
FT                 GHVARDCTKRTRCLLCMPEDGNDHPTGGFKCPAYKKAKAGQ"
FT   CDS           2296..5241
FT                 /product="Waldo-5_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEITQVNLNHCDTAQQLLWQFTTETKCDVAIIAEPYR
FT                 VPLENGNWVADRAGMVAIQVMGRFPIQEVVDSSHDGFVIAKVNGVFVCSCY
FT                 APPRWTDEEYNSMLDLLTDTLVGRTPVVIGGDFNAWAVEWGSRLTNARGYS
FT                 LLEALAKLDVRLCNEGAVSTFRKDGRESIIDVTFCSPLLLDDMNWRVSEEY
FT                 SHSDHQAILYSIGRRISPAPMRMRTYERKWKTKDFDKEVFIEALRTYSRAN
FT                 LDAEELTEVVATACDASMPRKLEPRNRRRPAYWWNETLSTLRAACFRARRR
FT                 VQRARTEVEREERRIAFREARAAFKQEIKRSKSSCYKELCREAEENPWGNA
FT                 YRIVMAKFKGPATPVETCPDKLRIIVEGLFPHHDPTVWPPTPYEDEEEEPG
FT                 GVRISNEELLAVAKGLKVKKAPGPDGIPNVALKTAILAFPDLFRTTLQKLL
FT                 DEGCFPDSWKVQKLVLVPKPGKPPGDPASYRPICLLDTLGKLLERIILNRL
FT                 TQCTESESGLSKRQFGFRKGVSTVDAIRTVVQNAEKASKQRRRGNRFCAVV
FT                 TIDVKNAFNSASWEAIALALHRMRVPGYLCSMLKSYFQNRVLVYETELGQK
FT                 SIRITAGVPQGSILGPTLWNAMYDGVLMLVLPNGVEIVGFADDVVLTVTGE
FT                 TLEEVKMLTTEAIDTIEAWMTGAKLQLAHHKTELVLVSNLKAVQRVEINIG
FT                 RQDISSKRALKHLGVMVDDRLNFNAHVDYACEKASKAVNTIARIMPNVGGP
FT                 RSSKRRLLASVAVSILRYGVPVWAAAVKTKRNRRMLNSTFRLMAIRVASAY
FT                 RTISSEAVCVIAGMMPICITLAEDVECYERRGTRNVRRIVRTDSLAKWQQE
FT                 WNNAEKGRWTYRLIPNVSLWVNRKHGEVNFHLTQFLSGHGCFRKYLHRFGH
FT                 ASSPCCPDCENVEETPEHVVFECPRFEEVRRDMRGVTVDNVVEEMCREESI
FT                 WNAVDSTVSRIMSELQRKWRSDQRSAS"
XX
SQ   Sequence 6404 BP; 1790 A; 1435 C; 1932 G; 1247 T; 0 other;
     gggttgcaaa atggtgagtc gacaactagg aaggagcgac caacatagct ctggtcctca        60
     caagccccta cctcacgctt ccacgggtct aacgatgaca aagaccgcca gctaagggtt       120
     gcgtacttag ctggtagtgc aacctgggca ctgttgtcct tctgacatca gctagagtga       180
     gggggtgcca ggtgggagct tgggattctt accttttcca agcgaaacta gtacatacag       240
     ccgtatggaa taccaccttt agtacttccc ttgggaagtg gccgagcgtc tggtccttct       300
     gactaggggc tcaagcatgg tctacctagg atgtggcggg ggttcatcag tgggctctgg       360
     tgaatctcta caaaaaacca cagatctgca agtagccctg aacaagcgac ctggtaccgc       420
     tttcaaagtg ccttagccca tcatctggag tgccaaccgg cacattagga tcgacgccag       480
     taagatctta attacggcat actggcggca tggactgagg aactggaaca aggaacacga       540
     catatctacg ctacagagct gacagccgca ctattctact cccttagtaa ggatgggtga       600
     cacttccctg aaacggcggg tgggccaata gtgcggttgc ccccgtcccg ttaaaaccgt       660
     ggcaggcctt caagtacgtt cgacgtctgt ccatcaagcg tgatgagtac ataggttcgg       720
     atgtagcatc cccgatctac gccgatctgg cactgtaccc ggcccccata agggtccgtg       780
     tcaacccacg catggcctca ctgcctacaa cgctcatagg tatgagataa ccatgggatc       840
     gcaaaggcga ctatgtacga cggatgaaga tagcggctcg gaggggggac ccactaaaat       900
     ggagagtatt gatgacacca aggcagttgg agaagacgcg aacgcgttcg caagaagtgg       960
     tagggttgcg agatcaccag ttacaccact ggacaccgta gcgagtacta gccaagtaca      1020
     tagtgagcca caagcaacac agcaggagag gacgttgcta aaccgcgtgt tcacacccaa      1080
     ttcgagtagc agcactaccc acaacgagtc gcgactggag aagtcgagtt tggcagacat      1140
     taggaggaag gttaacgagc tctacgagtt cgtgaaggag agaaataatg tgcacttgaa      1200
     aattaagcac atggtgacga gcattaggtc cgccgtatca gcagctgagc gtgagcagaa      1260
     tgcgctcaga atgcgagcgg aaacggctga gaaagctctt aaggaagcag cggaacgacc      1320
     tacgacggat gttcaggaga cgccgagaag tcaccaaaat acccgctcgg agaaaaggtt      1380
     cagggaatca cctggagaac aagaggatgc aaagaagcac aaaaacgaga agaaaggcgt      1440
     caacaaccag agagatgctg gaagtgaagg tgaatggcgt atcgtcggaa gtcagcagaa      1500
     gaagaagaaa aaccggaaag tgaaggaagg aaagaagccg gaacagaaga agaaagaaac      1560
     acgtcaacct cctaggctga ggtacaaggg tgatgctctg gtcgtggaag cgaacgacaa      1620
     aacaacgtac gctgcgctcc tcaaaagagt gaaggaagat ccggagctaa aggaactggg      1680
     cgaaaacgtt gtcaaaacgc ggcgcacgca gaagggcgac atgatcttcg ttctgaagaa      1740
     agacccctct gtcaagagca cggcgtacaa ggagctcatc gccaaatcct tgggcgacga      1800
     ggccaacgta agagctcttt cgcaggaggc agtggtcgag tgcagagatc tggatgagat      1860
     cacgacggaa gaagacctga agtgggcact ggccgagcag tgtaacctag aaggacagat      1920
     gtctatgcgg ttaaggaagt cgtatggagg cacacagacg gcggcaatcc ggttgccagt      1980
     ggatgctgcc aacaaactgg tggcgctagg cacgatcaaa gttggttggt cggtgtgccc      2040
     gctgagattg gtacctagag tcgccaagca aatggagaga tgcttcaaat gcaggggatt      2100
     cggccatcag tcgagaaact gtaagggccc ggacaggtcc gacctatgct ggaattgcgg      2160
     cggaaatggt cacgttgctc gggactgtac aaagcggact aggtgcctgc tatgcatgcc      2220
     ggaggacgga aacgatcatc cgacgggagg cttcaaatgc ccggcgtata aaaaagcgaa      2280
     ggcgggccaa taaggatgga gatcacgcaa gtgaatctca atcattgcga cactgcacag      2340
     caactgttgt ggcagttcac gacagaaacc aagtgcgatg tagcaataat tgcggagcca      2400
     tatcgggttc ccctcgaaaa cggtaattgg gtggctgata gagcaggtat ggtggcaata      2460
     caggtgatgg gcaggttccc cattcaagaa gtagtcgata gctcacacga cggctttgtt      2520
     attgccaaag tcaacggagt cttcgtatgc agctgttatg cgcctccgag atggacagac      2580
     gaagagtaca atagtatgtt ggatttgctc acagatacgc tggtgggaag aacgccggta      2640
     gtcataggag gagatttcaa cgcctgggcc gtagagtggg gcagcagatt gaccaacgcc      2700
     agggggtaca gcttactcga agctctggcg aagctagatg tgaggctgtg caacgaaggg      2760
     gctgtcagta cattccgtaa agacggtcgg gagtccatca tcgatgttac gttctgtagc      2820
     ccattgttgt tggatgacat gaattggagg gtgagtgagg aatattccca cagtgatcat      2880
     caggcgattc tctacagcat cggccggcga atctccccag cgccgatgag aatgaggaca      2940
     tacgagcgga agtggaagac aaaggacttc gacaaggagg tgtttattga ggcgcttcga      3000
     acatacagca gggcgaacct tgacgcagaa gagttgacag aagtggtagc aacggcttgt      3060
     gatgcatcga tgccgagaaa gttggagcct aggaaccgaa ggcgcccagc gtactggtgg      3120
     aatgagacgc ttagtaccct ccgtgctgca tgcttccgag ccagaagacg cgtccagaga      3180
     gcaagaaccg aagtagagag agaggaacgg agaatcgctt tccgtgaagc tagagctgct      3240
     ttcaaacaag agattaagcg gagcaagtcc agctgttaca aggagctatg tcgagaagcc      3300
     gaagaaaacc cttggggcaa cgcctaccgt attgtgatgg cgaagtttaa gggtccggcg      3360
     acaccagtcg aaacatgtcc agacaagttg aggattatcg tggaaggtct gtttccgcat      3420
     catgacccaa cagtgtggcc gcctacgcca tacgaagacg aggaagaaga acccggaggt      3480
     gtgcgaatct ctaatgaaga gctactagca gtggcgaagg gtctgaaggt gaagaaagct      3540
     cccggtccgg atgggatccc caatgtagca ctaaaaaccg cgatattggc gttcccggat      3600
     ttgttcagga cgacgctgca gaaactcttg gatgaaggct gtttcccaga cagttggaag      3660
     gttcagaagc tggtgttggt gccaaaacca gggaagccac caggggaccc agcatcgtat      3720
     agacctatat gtttgctgga cacacttggt aagctcctgg aaaggatcat ccttaacagg      3780
     ctgacacaat gcacagagag cgagagtggc ttatcgaaga gacaattcgg attccggaaa      3840
     ggggtctcga cggtggatgc aatccggaca gttgtacaga atgcggagaa ggcatccaaa      3900
     cagaggagga gaggcaatcg gttctgcgcc gtagtgacga ttgacgtcaa aaatgctttc      3960
     aacagcgcca gctgggaggc tatagcctta gcactgcata gaatgcgagt tcctggctac      4020
     ttgtgcagta tgctaaaaag ctatttccaa aacagagtcc tggtatatga aacggagttg      4080
     ggtcaaaagt cgatcaggat cacggcagga gtgccacaag gctcaatcct tggtccaacg      4140
     ctttggaacg cgatgtacga tggagtatta atgctggtgc tacctaacgg agtggaaatc      4200
     gttggattcg cagatgatgt cgttctaacg gtgactggcg agacgttgga agaggtcaaa      4260
     atgctgacga cggaagcgat tgacacgatt gaagcgtgga tgactggagc aaaactgcag      4320
     ctggctcatc ataagacgga gctagtgctg gttagcaacc tcaaagctgt tcagagggtt      4380
     gaaatcaaca tcggtaggca agatatttca tcaaaacgtg ctttgaagca tctgggggtg      4440
     atggtagatg accgtctaaa cttcaacgct cacgtggact acgcctgcga aaaggcgtcg      4500
     aaggcggtca acacgatagc gaggatcatg ccgaacgtcg gaggaccgag aagtagtaag      4560
     aggcgtctcc tagcgagtgt agcggtctct attctcaggt atggagtccc agtctgggcc      4620
     gcagcggtaa agaccaagcg taatcggagg atgttgaaca gcacattccg actcatggcc      4680
     atacgagtag cgagcgccta taggacgatt tcatcggagg cagtatgcgt tatcgctggc      4740
     atgatgccca tctgcatcac cctggccgag gacgtggagt gttatgagcg aagaggcacc      4800
     agaaatgtga gaaggatcgt cagaacggac tcgttggcta agtggcagca agagtggaac      4860
     aacgcggaga agggaaggtg gacttaccgt ctaattccaa atgtgtcact gtgggttaat      4920
     aggaagcatg gagaagtgaa cttccatctg acgcagtttc tgtccggaca cggctgtttc      4980
     cggaagtatc tgcatcggtt cggacatgct tcttcacctt gttgcccgga ttgcgagaat      5040
     gtggaggaaa caccggagca cgtagtcttc gaatgtccta ggttcgaaga agtgaggagg      5100
     gacatgcgag gagtcactgt cgataacgtt gtcgaagaga tgtgccgaga agaaagcatt      5160
     tggaacgctg tcgatagcac ggtatcgaga ataatgtccg agcttcagag gaagtggcgt      5220
     agcgaccaac gatctgctag ctagagtgaa cgcacgaaag ggaagaatgg ctgctcggtt      5280
     ccgggagata ttcctttgcc ggggaactct ccgccggagt aggctagatc caccgtcggg      5340
     gactagctga gtagacgcga cgtagcaccg gtcccgggtc gtaggagcac cagtgaaccg      5400
     gaagttagcc ttcaccggaa tcgctggact gactccggca ccctaccggt cggcccgtaa      5460
     aaaagtgaag agcagcagta gcagcagcag aaggagaatc ggtctcggga gaacttccat      5520
     cgccggggaa ttcttcgtcg gtgtaggcta ggtccaccgc cggggactag ttgagtagac      5580
     gtgtcatagc gccggtttta gggtcgtcgg ggcaccagtg aaccggaagc taggctccac      5640
     cggaatcgct ggactgactt cggcaccctt ccggtcggct cgaaacgtag aaaaagaaga      5700
     atcggtctcg ggagaatttt caccgccggg gaattcttcg tcggtgtaga ctaggtccac      5760
     cgtcggggac tagtcgagta gagtgcgtcg ggacgctggt aatgggtagt cgaggcgcct      5820
     acgaaccgga agttatgctc aaccggaatc gttggaccga cctcggcatc ctaccagctg      5880
     aacaaagaaa aggagaaggt cgtcgtaact gtgtgagtac gcgccctgaa tgagtgcaga      5940
     gtagtgtaca aactggagcc gaagggctca gaatgttgca tgtaggtact aacaaattga      6000
     cgggtcgcca atgggcgaaa ataggtacta acaaattact aacgtgagga gccgaagggc      6060
     tcagcatgag gcacaacgtt gaacggtttt aaaactgcta acaggagccg aagggctcag      6120
     gagccaaagg gctcaggagc cgaagggctc aggagccgaa gggctcagca tgtagagtaa      6180
     caaattgaag aggtgcgctc agcacgttag cctcccctcc gaagtaatac cggaaggtgg      6240
     ttccggaggg ttatggtact aaacctagga gagtgttttt agtggggaaa gcactttgtg      6300
     gatcccacac cgcgccaaaa attacactgg catgagcatg aacatataca ggccagtcta      6360
     tgaagatttt taaactccta gttgcatgaa aaaaaaaaaa aaaa                       6404
//
ID   Waldo-6_AAe repbase;    DNA;    INV; 5611 BP.
XX
AC   .
XX
DT   22-MAR-2011 (Rel. 16.04, Created)
DT   22-MAR-2011 (Rel. 16.04, Last updated, Version -1)
XX
DE   A Waldo non-LTR retrotransposon family from Aedes aegypti.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; Waldo-6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-5611
RA   Kojima K.K. and Jurka J.;
RT   "Waldo, (AC)n microsatellite-specific families of non-LTR
RT   retrotransposons from the yellow fever mosquito.";
RL   Repbase Reports 11(4), 1463-1463 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >97%
CC   identity. Both sides are (AC)n microsatellites.
XX
FH   Key           Location/Qualifiers
FT   CDS           578..2083
FT                 /product="Waldo-6_AAe_1p"
FT                 /translation="MASLLANITMGSRRRLLTTGEDSGLEGGPTKMENFQN
FT                 NAETMEFNAAGVENASAFQKSGKVPRSPVHTTENIPTASSSSKQCETQGPQ
FT                 GGLGIQSPVFTPKSSNNTQGGQLPENLRLTEVKNKVDELIQFVKDRHNVHT
FT                 VIKSKLTSIKSAVNAAMKEQEALIMRAEFAEKSLKKVTEQAAADKLRTPKV
FT                 RSDKPTKKRDRESPGEEEDPKKQRNDQGKNVPKKDKNGEGWQTVVNAKDKK
FT                 RKQNEKVEKKKDGKKKAKRRPQWSKGDAILVKANDQITYADILRKVKDDPN
FT                 LKDLGENVIRTRRTQKGEMLFELKSDPAIKSSAYQELVAKSLANEADVRAL
FT                 TQEAVVECRYLDEITTVDEVSEELRKQCNLGEEAMAIRLRKSYDGTLSATI
FT                 RLPVDTANKLVEKGKIRIGWSICPLRLVTRADRPPMRCFKCMDFGHPAASC
FT                 KGPDRTELCRKCGDRGHFGKDCKNRPRCLLCSSEEGNTHSTGSFNCRAYQK
FT                 AIAAQQ"
FT   CDS           2041..5088
FT                 /product="Waldo-6_AAe_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="LQLPRVPKGDRSPTVTEVTQINLNHCDTAQQLFWQST
FT                 TETKCDVAIIAEPYRVPLNNANWVADSTGAAAIQVTGRFPIQEVVASSNAG
FT                 FVIAKINGIYFCSCYAPPRWTLEEFGHMLEELTDELVGRKPVLIGGDFNAW
FT                 AVEWGSRVTNARGYNLLEALANQDVVLCNEGTVSTFRKDGRESIIDLTFCS
FT                 PSLAGNMNWRVSEEYTHSDHLAIRYSIGRRNTAAVQRNTIGDRQWKTKAFD
FT                 KDLFVEALRADSDALNLDAVGLTTAMARACDTTMPRKREPRNDRRPAYWWN
FT                 ETLNELRAACLKARRRYQRATNVEIKEERKVVFQAARAAFKREITLSKSEC
FT                 YKQLCREADANPWGDAYRVVMAKVKGPSIPVETCAEKLRVIVEGLFPTHDP
FT                 TPWPPTPYVDEEEAITEDRQVSNNELVAAAKALKVKKAPGPDGIPNVALKA
FT                 AIPAYPDMFRKVMQKCLDEGLFPDIWKIQKLVLLPKPGKPPGDPSSYRPIC
FT                 LLDTLGKLLERVILNRVAKCTESANGLSERQFGFRKGKSTVDAIRTVLERA
FT                 EKASKQKRRGNRYCAVVTIDVKNAFNSASWEAIATALHRMRVPDYLCRILQ
FT                 SYFENRVLVYATDAGRKELRVTAGVPQGSILGPTLWNGMYDGVLSLELPMG
FT                 VEIVGFADDVVLTVIGETLEEVEVLTTEAMGTVENWMNAVKLKIAHHKTEV
FT                 LLVSNRKAVQHAEITVGGHVIASQRSLRHLGVMIDDRLNFNSHVDYACEKA
FT                 ARATNALTRIMPNAHGPRSSRRRLLASVLSSILRYGVPAWGAALQTKRNRD
FT                 KLNSTFRIMAMRVASAYRTISSEAVFVITGMTPICITLGEDIECYQRRGTS
FT                 QVRKLARIGSLGKWQQEWDASEKGRWTHRLIPNVSTWVNRKHGEVNFHLTQ
FT                 FLSGHGCFKQYLHRFGHAPSPFCPVCSEREETPEHVVFDCPRFNMERSAAV
FT                 AAFGQDFNADMIVSKMIGDANLWNLVEKMVVEITSILQRNWREEQRSERQR
FT                 AVPGIGSSGR"
XX
SQ   Sequence 5611 BP; 1622 A; 1320 C; 1654 G; 1013 T; 2 other;
     gcggtgggag ctagggactt gttccctagc gccaatgaaa aaccaccagt tggcttgacc        60
     gggccctggt tccggtttac cggtttccag tcagcccaag gggaggttgt ctagggcgtg       120
     gcgggggttc aatgcagggc tctgttgaac tcctacaaaa acccacaggt ccgcaatcac       180
     acctccgtac aagcgacccg taccgctttc aaagtactct agcccatcac caggagcgcc       240
     acccggcgca ttaggatcca ggccagcaag atcctgatta tggaagactg gcagcataag       300
     aacatggaca cgactatgga ccacgcatag gaactacgct acagagctga cagtcgtact       360
     attctacacc cttagtaagg atggatgaca cctccctgaa acggcgagtg ggttaatggt       420
     acggttgccc ccgtcccgtt aaaaccttgg caggcctcca agtacgttcc aaacccgcca       480
     ccttagctgg tggaagtagg ctcagttgaa cctttcctga cttgcgccga tctggctctg       540
     aacttggcac cccataaggg gccgggtcaa ccctagcatg gcgtcactgc tggcaaacat       600
     caccatggga tcacgaaggc gactacttac gacgggcgag gatagcggct tagagggggg       660
     acccactaaa atggagaatt tccaaaacaa tgccgaaaca atggagttta atgcagcagg       720
     agttgagaac gctagcgcgt tccagaaaag cggtaaggtg ccacgatcgc cggtgcacac       780
     cacggagaat ataccgacgg ctagcagtag ctcgaagcaa tgtgaaacac agggaccaca       840
     aggaggatta gggattcaaa gtccagtgtt cacaccgaaa tcgagcaata acactcaagg       900
     aggccaacta cctgaaaact tgaggttgac tgaggtgaag aataaggtcg atgaactcat       960
     ccagttcgtt aaggaccggc acaatgtgca tactgtgatc aagagcaagc tgacgagcat      1020
     caaatccgct gtcaacgctg ccatgaagga gcaggaagcg ctgatcatga gggcagagtt      1080
     tgccgaaaaa tcactgaaga aggttacgga gcaagcagcg gctgacaagc ttaggacccc      1140
     aaaggtacgt agtgacaagc ctacgaagaa gcgagataga gagtcaccag gagaagagga      1200
     agacccaaaa aagcagcgca acgatcaagg aaaaaatgtg ccgaaaaaag acaagaatgg      1260
     tgaaggatgg caaaccgtcg taaacgccaa agataaaaaa aggaaacaga atgagaaggt      1320
     ggagaagaaa aaggacggga agaagaaagc gaagcgacgt ccgcagtggt cgaaagggga      1380
     tgccatactt gttaaggcaa acgaccaaat aacgtacgca gatatccttc ggaaagttaa      1440
     ggacgatccg aacttgaagg acctcggaga aaacgtgatt aggacgcggc gcacccagaa      1500
     aggggaaatg ctgtttgagc tgaagagtga cccagcgatc aagagctcgg cctatcagga      1560
     gctagtcgcg aaatctttgg cgaacgaggc ggacgttaga gcacttactc aggaagcagt      1620
     tgttgagtgc agatacctgg acgagattac aactgtggac gaagtgagtg aggagctgcg      1680
     taagcaatgc aaccttggtg aggaggccat ggcaatccgt ctgaggaagt cgtacgacgg      1740
     cacactgtca gcgacaattc ggctaccagt cgacacggcg aacaaactgg tggagaaagg      1800
     caagataaga attggctggt cgatatgccc actgagactt gtcacgcgag cagataggcc      1860
     accgatgcgt tgcttcaagt gcatggactt cggacacccg gcggcgagct gtaaaggccc      1920
     agacagaacc gaactgtgca ggaaatgtgg agatagaggt cactttggga aagactgcaa      1980
     gaatagacca aggtgcttgc tctgctcatc ggaggaagga aacacccatt cgacgggtag      2040
     cttcaattgc cgcgcgtacc aaaaggcgat cgcagcccaa cagtaacgga ggtaacgcag      2100
     atcaacctga atcactgcga caccgcacag caactgtttt ggcagtcgac aacagaaact      2160
     aagtgcgacg ttgcgataat agctgaaccg tatcgagtac cactcaataa cgccaattgg      2220
     gtggcggata gtacaggcgc agcggcgata caagtgacgg gtaggtttcc tatccaggaa      2280
     gtggttgcca gctcaaacgc ggggttcgtg atcgccaaaa tcaacggaat ctacttttgc      2340
     agctgctacg cgcctccaag atggacgctc gaagaatttg gtcatatgtt ggaggagttg      2400
     accgacgagc tagttggtcg aaaaccagtg ctgattggag gtgacttcaa tgcatgggcc      2460
     gtggagtggg gtagcagggt aaccaatgcc agaggttaca acctactgga ggctctagca      2520
     aaccaagacg tagtattgtg caacgaaggc accgttagca catttcggaa agacggacgg      2580
     gagtcgatca ttgacctaac attttgtagc ccatcactgg cgggcaacat gaactggagg      2640
     gtaagcgaag agtacaccca tagcgatcac ctggcgatac gctacagtat tggccggcgg      2700
     aacactgcgg cagtgcagag gaacacaatt ggcgaccggc agtggaagac taaggctttc      2760
     gacaaagatc tctttgttga ggcacttcgc gccgacagcg atgccctgaa cttggatgcg      2820
     gtagggctga caacagcgat ggcaagggca tgtgatacaa cgatgccacg gaaacgggag      2880
     ccccgcaacg atcgacgtcc cgcgtactgg tggaacgaga cactcaacga actccgagct      2940
     gcttgcctta aagccaggag gcgttaccag agagcaacga acgtagaaat caaagaggag      3000
     cgaaaggtcg ttttccaagc agccagagct gctttcaaac gcgagataac actgagcaag      3060
     tctgagtgct acaagcagct gtgccgagaa gctgacgcca acccctgggg ggacgcttat      3120
     cgagtggtca tggcaaaagt caagggtcca tcaattccgg ttgaaacgtg tgctgaaaag      3180
     ctgagggtta ttgtcgaggg tctcttccca acgcatgatc cgacaccgtg gccacccacg      3240
     ccgtatgtcg acgaggaaga agcaatcact gaagatcgtc aggtttccaa taacgagctt      3300
     gtagcagcgg cgaaagcatt gaaggtgaaa aaggcccccg gaccggatgg aataccgaat      3360
     gtggcactaa aagcggcgat tccagcgtac ccggatatgt tccggaaagt gatgcagaaa      3420
     tgcctggacg aaggtctttt cccagatata tggaagatcc agaagctggt gctgctaccg      3480
     aagccaggaa aaccacccgg tgatccttca tcatacaggc ctatatgctt gctggataca      3540
     ctgggcaaac tcttggaacg ggtcatccta aacagggtgg ctaaatgtac ggagagcgcg      3600
     aacggactat cagaaaggca gttcggattc cggaagggaa aatcgacggt agacgctatt      3660
     cggacggtcc tggagagggc cgagaaggca tcgaagcaaa agcgaagagg gaatcgttac      3720
     tgcgccgtag ttacgataga cgttaagaac gcgttcaata gtgccagttg ggaggccatc      3780
     gccacagcgc tgcatagaat gcgggttcct gactatctgt gccgaattct acagagttac      3840
     ttcgagaatc gggtgttggt gtatgcaacc gacgccggcc gaaaggagtt aagagtaacg      3900
     gcgggagttc ckcaagggtc catactgggt ccgacgctgt ggaatgggat gtacgacggg      3960
     gtcctatcat tggagttacc catgggcgtc gagatcgtcg gcttcgctga tgacgtcgtc      4020
     ctaactgtaa taggcgaaac gctggaagaa gtggaagtgc taacmacgga ggcaatgggt      4080
     acggttgaga actggatgaa tgcagtcaag ctgaaaatag cccaccacaa aacggaggtg      4140
     ctactagtca gcaatcgcaa agcggttcaa cacgctgaga ttaccgtcgg gggacatgtc      4200
     atagcgtcac agcggtcact cagacacctg ggcgtgatga tagacgatcg gctaaatttc      4260
     aacagccacg tcgactatgc atgtgagaag gcggcaaggg cgaccaacgc actcacaagg      4320
     atcatgccga acgctcatgg tccgagaagc agtaggaggc gtcttctggc tagcgtatta      4380
     tcgtcgatac tgcgatacgg agttccggcc tggggtgcag cactgcaaac caagcgcaat      4440
     cgggacaagc tcaacagcac gttccggatc atggctatga gagtagcaag cgcatacaga      4500
     acaatatcgt cggaggcggt atttgtgatc accgggatga ctccgatttg catcaccctg      4560
     ggagaagaca tcgagtgtta tcagcggaga ggcactagtc aggtgaggaa attggcgagg      4620
     atcggctcgc tgggcaagtg gcagcaagaa tgggacgcct ctgagaaagg tagatggacc      4680
     cacagactca tcccgaatgt gtcgacctgg gtaaacagga agcatggcga agtaaacttc      4740
     cacctgacac agttcctgtc aggtcacggt tgcttcaagc agtatttaca tcggttcggc      4800
     cacgcgccgt caccgttctg tcctgtgtgt agtgaaagag aggaaacgcc ggaacatgtt      4860
     gttttcgact gcccgaggtt caacatggaa cgaagcgcgg cggtggctgc ttttggacag      4920
     gacttcaatg cagacatgat tgtaagcaaa atgataggcg atgctaacct ttggaatctg      4980
     gtggaaaaaa tggtggtgga gataacatct atcttgcaga gaaactggcg ggaagagcag      5040
     cgaagcgaga ggcagagagc agtgcctggc atcgggtcgt cggggcgcta acgaaccgga      5100
     agtcaacccc caaccggaat cgtttgaccg acctcggcac tcgagtcagc ctgacgaaga      5160
     aagaaggcga agatctcccc tgcgatagcc gccggtagtc ggggcaccat cagtgcggac      5220
     gtctccccaa ccggtactgg tgacaacctc cgacgccggg ggaagtcagg aggagaagga      5280
     agcgagaagg gatgaacgat ggaaggagac agaaaagcgg aagaaggtgg aacggcagtc      5340
     tgctcaacat gcaagagcaa accactggca gactgcgcag agtgcaagag cacagagcgg      5400
     gaaaacgtca agaacgtaag agaagtgcag atgcacagcc ccccccgacg aagtcgcatc      5460
     tagtggaatc cggggggatc caggctaccg ccgaaagtga ggactaggtt ttagtggata      5520
     ggcacgcaag tgaatcccac acagtgccaa taattaacag gccaggtttt tgaaactttt      5580
     ttgatacccc actataataa aaaaaaaaaa a                                     5611
//
ID   Waldo1_AG   repbase;    DNA;    INV; 5580 BP.
XX
AC   AB090814;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon Waldo1_AG DNA, complete
DE   sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element; gag;
KW   reverse-transcriptase; Waldo1_AG.
XX
NM   Waldo1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090814; Positions       1    5580.
XX
FH   Key           Location/Qualifiers
FT   CDS           605..2101
FT                 /product="Waldo1_AG_1p"
FT                 /translation="MRIHVPCAVSVLGCAYTQRTKCAACLDSPDGMNGNES
FT                 LHPRPLGSALKDIGAFFGRSSKTPRSPPNDNVQGSVSPAVDVVEVMPEEQT
FT                 SASMECQETSHPIKEQGFEVSASKLQEALMVARELHTYTKDRNNVHAPIKK
FT                 MSVSILSALSCIERELLTMKLRAERAEKALREVQSEPPETPMTGKRSRKAR
FT                 TPEEAEDAKRAKNDAPSCNRPDAEYSEGVKNSENGELWSTVVSKKAQRKKK
FT                 MGTMAEGKQTRAGEHNGPVKPVPRRPKTEAILVETTEVSTHKDILRKLKAD
FT                 PELQSFGKQVVRIRSTKNGGLLFELKKSDQTECESFSGKIQQAIGEAGNVK
FT                 SLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQT
FT                 ALVKLPVKLVSVVTGAGKVQIGWSVCPVRINIPSRRCYRCWQTDHISQDCC
FT                 GPDRRDCCLRGGEKGHFAATCRLPPRCVLCPDGSNAHHSSGAFCPAAKKTA
FT                 PWK"
FT   CDS           2095..5241
FT                 /product="Waldo1_AG_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MEVAQINLNHCEEAQALLSQVMVEEIGDIAIVSEPYS
FT                 APTGSSSWVADKTGNAAIWVTGTIQRVVSNTFEGFCIAEVNGVFFCSCYAP
FT                 PSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNSRGDAVL
FT                 ESFARLGVTLGNAGTTPTFNRNKRTSIVDITFCSTTLSERLNWRVSDALTL
FT                 SDHNVVRYAIIQGHRLTSSSAHGSRVGGRGWKTESFNEDFFKELLAFGDFG
FT                 EAVSASQIVIALTKASDGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECV
FT                 AARRKMQRERCPEVKQQLRIVYIAARSELQRAIKASKRQHFLKLCDEIARK
FT                 PWGLAFNTLMNKVKSSEPVEQCPVKLKSIIETLFPTHPTINTPETDPVPIT
FT                 RQEIINLANRLKCGNAPGIDGIPNMAIKAAMLAYPDVFKKRAPPNLSPTIN
FT                 TPETDPVPITRQEIINLANRLKCGKAPGIDGIPNMAIKAAMLAYPDVFKNV
FT                 LMNTLTTGQFPSMWKIQKLVLIPKPGKPPGHPSAFRPLGLVDNLAKVQEMV
FT                 ILDRLTKYTEGPHGLSDRQFGFRKKRSTVDAILAVLEKGIAAFQRKRCGAR
FT                 YCALITIDVKNAFNSASWEEIAAAVERMKIPPHLCRLSRNYLDGRVLQYDT
FT                 AEGVKTNAIPAGVPQGSVLGLTLWNVIYDGVLTLALPHGVEITGFADDIAI
FT                 TVSAVSIEEVEMLATDAVGRIDRSMRDAKLVIAHAKTEFIVISSHKVHQKA
FT                 SIMAGTVQVESTRSLKYLGVVIDDRLKFKSHLEEACKKVMKAINALAAFTP
FT                 NIGGPCSSIRRLHANCAISVLRYGAPVWAHILKEKQHQNTVNKVHRKLAMR
FT                 VTSAYRTISYEAVCVIASMMPLCITLEEDSKNFRKSRAGESFTETAKKASR
FT                 QASMRQWQNEWSNSLNGRWTYLLIPDVGAWLDRKHGDVDYFVTQVLSGHGC
FT                 FRSYLHRFNRASSSRCPACKDEDETVDHVMFHCPRFAEERLQLNESCRVEV
FT                 GCSNLVQVMLQHTDSWEAAATTMRLILTKLHQKWKQDQQLGDI"
XX
SQ   Sequence 5580 BP; 1512 A; 1273 C; 1549 G; 1246 T; 0 other;
     gttgagtgat gagttggagt tgagtcatga aggacgtgct tttgctgtcg cttctgatcg        60
     aagctgtttt tatagtgttt tagtgcgatt cgctggtgct tttcctggac aaggaatttg       120
     gttctgcctg tggtttccgt gcgtgtagcg ggttctggcc gcgggccttt ttctgctgag       180
     gggctgaagc gcggaacgtg ctaatcttgt gcaacgcggg tgaagccgcc actatagaac       240
     aaggtcgtgt tagaaggaag tgcggttgtt tgtagtggtg ttgccgtgga aagtatctcg       300
     tgcatttagg atacacactg taccacttaa atattgattg tgcgcgtgaa gtatagttcg       360
     gtattacggg tgcccctacg cacacttgag tttagcgagt agtgtaattg tgctggtgaa       420
     gctagcagca cccagtgcgt gagtgactcg aacgtaagtt ctgtgagttt cagtgactta       480
     tcgttgcgtt cgttgcgttg tgtgtggtat ccaaacacca ccggtatact gtgtgcgtag       540
     tgagtgaatt acgatcatcg agtgcgtgag tgcctttgag tttacgtgcg gaagaagcat       600
     taagatgcgc atacacgtac cgtgcgcggt tagcgtctta gggtgcgcat acactcaaag       660
     aactaaatgc gctgcgtgtc tggattcgcc tgacggaatg aacggaaacg aatcgcttca       720
     tcctcgtccg ctagggtctg cccttaagga cataggcgcc ttttttggtc gtagcagcaa       780
     gacgccaaga tcgcccccga atgataatgt gcagggttct gtttcaccgg cggtggatgt       840
     cgttgaagtt atgccggaag agcagacttc agccagcatg gagtgccagg aaacttccca       900
     tcctatcaag gaacagggtt tcgaggttag tgccagcaaa ctgcaagaag ctctgatggt       960
     agcaagggag ctgcatacgt atacgaagga tcggaacaat gtacatgctc cgataaaaaa      1020
     gatgtcagtg agcatcctct cggcgttatc gtgtatcgaa cgggagctgc tgactatgaa      1080
     gttgcgagcg gagagggctg aaaaggcgct tcgcgaggtc caatcggaac ctccagaaac      1140
     acctatgact gggaagagaa gtaggaaagc gagaacgcca gaggaagcag aggacgctaa      1200
     acgagcaaaa aacgatgctc cctcttgtaa ccgtccagat gcagagtaca gcgaaggggt      1260
     taaaaactca gagaacggtg agctatggag cacagttgtc agcaaaaagg cccaacgcaa      1320
     gaagaagatg ggaaccatgg cggagggtaa gcaaacaaga gcgggtgaac acaacggccc      1380
     agttaaaccc gtaccgcgac gaccaaaaac ggaggcaatc ctagttgaga caactgaagt      1440
     atcaacgcac aaagacatcc tccgcaagct taaagctgac cctgagctac agtcgttcgg      1500
     caaacaagtt gttcgaataa gaagcacaaa aaatggagga ttgctatttg agcttaagaa      1560
     aagtgatcaa acggaatgcg aaagcttttc cggaaagatt caacaagcca ttggtgaagc      1620
     tggcaacgta aagtctttgg gacaaatgga gacagtagaa attcgtttca tcgacgaaga      1680
     aacggaagca gctgacgtag agagggatct gagaaaccag ataactggcc tcgaaggcta      1740
     taaggtggag gtaacgatga agacttcctt ctctggtatg cagaccgctc tagtgaaact      1800
     cccggtaaag ctggtgtcgg tggttacagg agcaggaaaa gtgcaaatcg gttggtcagt      1860
     ctgcccggtg cgtataaata taccgagcag aagatgttat cgctgctggc aaaccgacca      1920
     catttctcag gactgttgtg gaccagacag aagggactgc tgcctgcgtg gcggggaaaa      1980
     agggcacttc gctgctacgt gtcgtctgcc accacgatgt gtgctttgtc cagatggatc      2040
     caacgcgcat cactctagcg gagcattctg tccggcggct aagaaaacag caccatggaa      2100
     gtagcccaga taaacctaaa ccattgtgaa gaggcacagg cactactgag ccaggtgatg      2160
     gtggaggaga taggagatat tgccatagtc tctgagccat acagcgctcc aacaggctct      2220
     agtagctggg tggcagataa gactgggaac gctgcaatat gggtgacagg cacaatacaa      2280
     cgggtagtat ctaacacctt cgagggtttc tgcatagccg aagtaaatgg agtgtttttc      2340
     tgcagctgtt atgctccccc aagttgggag ctagagaggt tccatgttat gttagacaac      2400
     ctcgtagcag agctggatgg gcatagacca cttgtaattg ccggtgattt caatgcctgg      2460
     gctgttgaat gggggagcaa gcgaactaat agcagaggtg atgctgttct cgaaagcttc      2520
     gcccggctgg gagtaacgct gggaaatgcc ggcacaaccc ccacgttcaa cagaaacaag      2580
     aggacatcaa tcgttgatat tacgttctgc agtaccaccc tctcggagag attgaactgg      2640
     cgagttagtg atgcactcac tctcagcgac cataatgttg tcagatacgc catcatccaa      2700
     gggcataggc taacatcatc atcagcgcat gggtcccgag ttggtggtag aggctggaaa      2760
     accgaatcct tcaatgagga tttctttaag gagcttttag ctttcggaga tttcggcgaa      2820
     gccgtgagcg cctctcaaat cgtgatagcc cttaccaaag cctctgatgg cgctatgcca      2880
     agaagaaaac ctcctaacgg ggcgacaagc cgtcggcagc ctgtgtactg gtggaacgcg      2940
     tcgattaaaa tacaacgggc tgaatgcgta gcagcacggc gcaaaatgca gcgagaaaga      3000
     tgccctgaag taaaacaaca actcaggatc gtatacattg cggctaggtc agaacttcaa      3060
     agagcgatta aagccagtaa aaggcaacac ttcctcaagc tatgcgacga aatcgctcgg      3120
     aagccctggg gacttgcctt caatacactc atgaataagg taaagtcttc ggaacctgta      3180
     gaacagtgtc ctgtaaagct gaagagcatt attgaaactc tgtttccaac acatcctacg      3240
     atcaacacgc cagagactga ccctgtgcct ataacgagac aggagattat taacctggcc      3300
     aatcgtttaa aatgtggcaa tgctcctggg atagatggca tccccaatat ggcgatcaag      3360
     gctgctatgt tggcataccc tgatgtgttc aaaaaacgtg caccaccgaa cctcagtcct      3420
     acgatcaaca cgccagagac tgaccctgtg cctataacga gacaggagat tattaacctg      3480
     gccaatcgtt taaaatgtgg caaagctcct ggaatagatg gcatccccaa tatggcgatc      3540
     aaggctgcta tgttggcata ccctgatgtg ttcaaaaacg tgctaatgaa caccctgact      3600
     accggccagt ttccgtcaat gtggaaaata cagaaattag tcttgatacc gaagccaggt      3660
     aagccgccag gccacccgtc agctttcagg cccttgggac ttgtggataa cctggccaaa      3720
     gtgcaagaga tggtgatttt ggaccggctt acaaaataca ctgagggacc acacggtctg      3780
     tctgatcgcc aattcggctt ccggaaaaaa cgatctacag tggacgcgat actggcggtg      3840
     ctggaaaaag gtattgcggc gtttcaacgg aagcgatgtg gagctcgata ctgtgcgctc      3900
     atcaccattg acgtgaagaa tgccttcaac agtgctagtt gggaggaaat tgcggcagcg      3960
     gtagagcgca tgaagattcc cccgcacttg tgcaggctgt cgaggaatta tcttgacggt      4020
     cgcgtgctgc agtatgatac ggcggaagga gtgaaaacca atgccatccc cgcaggcgta      4080
     ccccagggat cagtgcttgg tctcaccctg tggaacgtca tatatgatgg agtactgacc      4140
     ctcgccctcc ctcatggtgt cgagatcact ggttttgcag acgacatcgc tatcactgtc      4200
     tcagctgtgt ctattgagga ggtagagatg ctcgccaccg acgcagtcgg tcggattgac      4260
     cggtcgatgc gggacgcaaa gctagtgatt gcgcatgcga agactgagtt catcgtcatc      4320
     agcagtcaca aggtgcacca aaaagcatcg ataatggcag gaactgtaca agtcgagtct      4380
     accagatcgc tgaagtatct tggggtagtc attgatgacc gactgaaatt taagagccac      4440
     ctcgaggaag cctgcaagaa ggtcatgaaa gcaataaatg cactagcggc attcactcca      4500
     aacattggcg gaccgtgtag cagcattagg cgccttcatg ctaactgcgc catctcggtg      4560
     ttgaggtacg gagcgccggt ttgggcgcat atactaaagg agaagcagca ccagaacacc      4620
     gtgaataagg tgcacaggaa gttggccatg cgtgttacta gcgcgtaccg taccatttcg      4680
     tacgaagcgg tatgcgttat tgcgagcatg atgcctcttt gcatcaccct cgaggaggac      4740
     tcgaagaact tccggaaatc gcgtgcgggt gaatctttca ctgagactgc caagaaagcc      4800
     tcaaggcaag catcgatgcg gcaatggcag aacgagtgga gtaactcgtt gaacggaaga      4860
     tggacctact tgctgatccc cgacgttgga gcatggctag acaggaaaca tggtgatgtg      4920
     gactactttg tcacccaggt tctttccggc catggctgtt ttagaagcta tctgcacagg      4980
     ttcaatcgcg cctcttcatc tcggtgccct gcgtgcaagg atgaagacga gacggtggac      5040
     cacgtcatgt tccactgccc tcgattcgcc gaggaacgcc tgcagttgaa cgagagttgc      5100
     agagtagaag tgggctgttc taacctggta caagtcatgc tgcagcacac cgactcatgg      5160
     gaggcagcgg caacaacaat gcgtctgatc ctgaccaagc tgcaccaaaa atggaagcaa      5220
     gaccagcagc tcggcgatat ttaaattcgt cgtgagtgta tgtgttagtg aacgcgtgag      5280
     tgcgcggcgg aaaaagtgtc gtttagtgtc tagtgtttcg cgtcgtcgtc atgaccgtct      5340
     tgtgttcgcg tgataactgt caaatctgtc tcgcgaactt tggctcatcg tgcagtagcg      5400
     aggatgaaat gctaatgcat aagcccttcc ccaagaagca taccgaaagg tgaacccatg      5460
     gggaagggta tatggcccaa ggagggggtt tactgggtaa gaatcccatg tcaacacccg      5520
     tgcgacaacg ggagtctttc gaagattccc cctccttgta gaacaaaaaa aaaaaaaaaa      5580
//
ID   WaldoAg2    repbase;    DNA;    INV; 4895 BP.
XX
AC   AB090815;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   24-SEP-2010 (Rel. 15.10, Last updated, Version 2)
XX
DE   Anopheles gambiae retrotransposon WaldoAg2 DNA, complete
DE   sequence.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like domain; WaldoAg2.
XX
NM   WaldoAg2.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB090815; Positions       1    4895.
XX
FH   Key           Location/Qualifiers
FT   CDS           160..1635
FT                 /product="WaldoAg2_1p"
FT                 /translation="MSGNESLPPRPLGSALKDIGAFFGRSSKTPRSPPSDL
FT                 GECSASPTVEVVASTSVDSAVVEAVTGEENVMAAEDSVTSQPVESFSSSKE
FT                 PALVVGGSKLQEALKVAGELHAYTKDRNNVHHPIKKMAVSILSALACVERE
FT                 LMTTRLRAERTEKSLKEALEGCSQTETPVNGKRGRNLRSTEEADDAKRAKN
FT                 DAPSGSSLVASAGCGPEMNETKGSWSTVVRKNRRKPKESVIPDNTGEKQVH
FT                 PASTREALPPRRPKTEAVLVAPGENITHVEILRKLKADPELQAFGKKVVRI
FT                 RGTKNGGLLFELGKSDDDCGVDYAKVVQNSIGNNGTVKTLGQMETVEIRYF
FT                 DAETQTSDVEKDLRDLFTELDGVTFETKMTKSFNGMQTASVKLPTKLATLV
FT                 AARGKIRIGWSICPVKIQIPKRRCFKCWETGHFSRDCKGPDRTDCDAVKQG
FT                 ILPKHASNLPDVSFVHRVQTCIIPAAFSVQRASRNRHGDSSVEPEPL"
FT   CDS           1508..4522
FT                 /product="WaldoAg2_2p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="MRQTSQMCPLSTGYKHVSYQRRFLSSEQAEIDMEIVQ
FT                 LNLNHCEEVQDMLGQLLIEEKGDVAMLSEPYRCPSGVNNWVSDSTGTAAIW
FT                 ASGRFPIQQIISRHGEGYVIAVINKITFCSCYAPPRWDLEKFEEMLKRISD
FT                 EVYDVNPIIISGDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCP
FT                 TFVRNSRTSIIDLTFCSPALASSMNWRVSNAYTLSDHRVIRYTAGSKCHRV
FT                 AQGSGFPAWKTQCFNEELFIEALRFGDFSNTSSALKLASAIANACDTSLPR
FT                 RKGGPYPRRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRRLYILA
FT                 RSNLKRKIKASKRRCFLALCDEVENNPFGAYRTLMGKMVGQDLPRERNPTA
FT                 LKTIIEQLFPNHEPQTPRDISRNPDVEPVSISADEIQKAADHLKLGKAPGP
FT                 DGIPIEAIKAAIKAYLEAFLSVFQNCFDTGFFPIPWKRQKLVLLPKPGKPP
FT                 DDASALRPLALIDNFAKILEILILNRLVVYTEGEHGLSDRQFGFRKGRSTG
FT                 EAIAAVLKKRRSALLKKRTGNRYCAIVTIDVKNAFNSANWEAIHAALSKMM
FT                 IPPYLCRLLRSYLDHRVFLYDTALGIKKMSLTAGVPQGSILGPTLWNVMYN
FT                 GVLTLGLPPGPEVIGFADDIALTVLGESIEEIELLTSDSVSRIESWMQQMR
FT                 LEIAHKKTEFLIISSHKTVQSGSIRVGDERIESIRHLKYLGVIIDDRLSFR
FT                 KHVEYACNNVFKAAISLIQIMPNIGGPKSSWRRLLADVAFSRLRYNAAIWA
FT                 HVLVLKENRQLANRVHRLLAMRVVRAYKTISHVAVCVIASMVPICLILAED
FT                 SECCSFSGVSNAGLSRSSAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWT
FT                 SRKHGEVNFYMTQFLSDHGCFRSYLHKYRHASSPDCPACVSIVESTEHVLF
FT                 HCPRFAEERHEITVKCGTTINGTNLTELMLKNAGTWEVIANGMRSILLKL"
XX
SQ   Sequence 4895 BP; 1364 A; 1112 C; 1279 G; 1140 T; 0 other;
     ctggtattat cagtgttgcg tgagttacag tgcaaaggcc cttcattcgt ttgtgttgtg        60
     tgagtgtctg caaattaagt gattatacac taggctcgct aggtgagttc ctcgtaaatt       120
     gattttcttc atgtgggatt cggttgagca aaaccaccaa tgagcgggaa cgaatcgcta       180
     cctccccgtc ctctggggtc tgccttgaag gatataggcg cgttttttgg ccgtagtagc       240
     aagacgccta gatctcctcc gtcggatctc ggagagtgtt cagcttctcc tacggttgaa       300
     gtggttgcca gtacgtcggt cgattctgct gttgttgaag cggtaaccgg cgaggaaaat       360
     gtgatggcag cagaggattc cgtgacctca caaccagtgg aatcgttttc ttcatcgaaa       420
     gagccagcgc ttgttgtcgg tggaagcaag ctgcaggaag ctttaaaggt ggctggagaa       480
     cttcatgcct atacgaaaga tcggaataac gttcaccatc cgatcaagaa gatggcagtg       540
     agcatcttat cggcgttagc ctgtgttgaa cgtgagctca tgacgacacg gctgcgagcg       600
     gaaaggactg aaaagtccct aaaagaggcg ctagaaggct gctcccaaac cgagacgcca       660
     gtgaatggta aacggggcag aaatttgagg tcgactgagg aagcggacga tgctaagaga       720
     gcaaaaaatg atgccccctc tggcagctcg ctggtcgcga gtgccggttg tggccccgaa       780
     atgaacgaga caaaggggtc gtggagcacg gtcgtgcgga aaaatcgccg gaagccgaag       840
     gaaagtgtca ttccggataa caccggcgaa aagcaagttc accctgcatc tactcgggag       900
     gcgcttccgc cgaggcgtcc aaaaaccgaa gccgtactag tggcgcccgg cgaaaatatt       960
     acccatgtgg aaatcctccg caagctaaaa gcagatcctg agcttcaagc tttcggtaag      1020
     aaagtagtgc gaattcgagg aacaaaaaat ggaggcttgc tattcgaact gggcaaaagc      1080
     gatgatgatt gcggagtcga ctacgccaag gtggttcaga attccattgg caacaatggg      1140
     acagtaaaga ccttaggcca aatggaaacg gtggaaattc gatacttcga cgcagagacg      1200
     cagaccagcg acgttgaaaa agatcttcgg gatttgttca ccgagctgga cggggtaact      1260
     ttcgagacca agatgaccaa atccttcaac ggaatgcaga ccgcttcagt gaagctcccg      1320
     acgaaactag caacgctagt ggcagcacgt ggcaagatta ggattggatg gtcaatctgc      1380
     ccggtaaaaa tacaaatacc gaaaaggagg tgtttcaaat gctgggagac gggccatttc      1440
     tcccgcgatt gcaaaggccc agataggacc gactgcgatg cggtgaaaca gggcattttg      1500
     ccaaaacatg cgtcaaacct cccagatgtg tcctttgtcc accgggtaca aacatgtatc      1560
     ataccagcgg cgttttctgt ccagcgagca agcagaaatc gacatggaga tagttcagtt      1620
     gaacctgaac cactgtgaag aggtccaaga catgcttggg caattgctta tagaggagaa      1680
     gggagatgtg gcaatgctgt ccgagccgta tcgctgtcct agcggcgtaa acaattgggt      1740
     ttctgactct acagggaccg ctgctatttg ggcttctggt agatttccga tccagcagat      1800
     catttcaagg cacggcgagg ggtatgtgat tgcagtcatc aacaaaataa ccttctgcag      1860
     ctgctacgct ccgccaagat gggatctaga gaaattcgaa gaaatgctta agaggatttc      1920
     agatgaggtg tacgatgtta atcctatcat catttcagga gattttaacg cttgggccac      1980
     ggaatggggc agtaaaagca caaacgccag aggaaacgcc gtgttggagc acttttctag      2040
     actgaactta gtactggtaa atgttggctt ctgtcccaca tttgtaagga atagcagaac      2100
     ttccattata gaccttacgt tctgtagtcc agcattggct tcttccatga actggagggt      2160
     aagcaacgcc tacaccctca gcgaccaccg agtgatacgc tacacggcag gaagcaagtg      2220
     ccacagggtt gcccagggct ccggttttcc agcctggaaa acacaatgct tcaacgaaga      2280
     actgtttatt gaggcattga ggtttggtga tttctcaaat acctcgtcag cattgaagct      2340
     agcgtcagcg atcgccaacg cctgtgacac ctctttgcca cgaaggaaag ggggacctta      2400
     cccacgacgg agagcttact ggtggaccac cgaaatagcc cagtgccgaa gccattgcat      2460
     cgaagcacgc agaaagatga atcgagccaa atcctcggaa caaagggagg atctgagacg      2520
     tttgtacatc ctggcacgat caaatctaaa acggaagatc aaggcaagta aaaggagatg      2580
     ctttttagcc ctatgcgatg aggttgaaaa caacccgttt ggtgcttacc gaacgctaat      2640
     gggtaagatg gtcggccaag acctacctag ggaaaggaac ccaaccgcgc tcaagactat      2700
     cattgaacag ttgtttccta accatgagcc acaaactcca cgtgatatat cccgcaatcc      2760
     tgatgttgaa cctgtgtcaa tatccgctga tgaaatacag aaagcagcag accatctcaa      2820
     actggggaag gcacctggtc cggacggtat tcccattgaa gcgatcaaag cagctatcaa      2880
     agcgtacctg gaagcttttt tatcagtgtt ccagaactgc ttcgatactg gcttttttcc      2940
     gataccctgg aagcgacaaa aactcgttct tctaccaaag cctggaaagc cccccgacga      3000
     cgcatcagca ctaaggcctt tagcattgat agataatttc gcaaagatac tagaaatcct      3060
     aatactcaac cgattagttg tctatacgga aggcgaacac ggactgtcgg acagacagtt      3120
     tggctttaga aagggacggt ctactggtga agcgatcgca gctgttctaa agaaacgacg      3180
     aagcgccttg ctaaaaaaga ggacaggaaa cagatactgc gcgatcgtta cgattgacgt      3240
     aaagaatgct ttcaacagtg ccaactggga ggccatacat gcagctcttt ccaagatgat      3300
     gattccaccg tacctctgta ggctgctgag aagctattta gatcaccgtg tgtttttata      3360
     cgacacagct ctgggaatca aaaaaatgag cctcaccgct ggcgttcctc aaggttcgat      3420
     tttgggtcca actctctgga atgttatgta caacggagtt ttgaccctag ggcttcctcc      3480
     aggacctgaa gtgataggtt ttgctgatga tattgctctt actgtccttg gtgagtcaat      3540
     agaagagatt gaactcctca catccgactc cgtaagcaga atcgagtcgt ggatgcaaca      3600
     aatgaggcta gaaatcgccc ataaaaagac ggaattcctc atcataagta gtcacaagac      3660
     agtgcagtca ggtagcatcc gggtcggtga tgaacgtatt gagtcgatac gtcacctaaa      3720
     atatcttggt gtgatcatcg atgaccgctt aagtttccgg aagcatgtcg agtacgcctg      3780
     taacaacgtc tttaaggcag caatctcgtt gatacaaata atgccgaaca ttggagggcc      3840
     caagagtagc tggaggcgac ttctagctga cgtggccttc tctcggttgc gttataacgc      3900
     tgcgatctgg gcacatgttt tggtgctaaa ggaaaaccga cagttggcga acagagtgca      3960
     ccgattgcta gctatgagag ttgttcgtgc ctacaaaaca atatcgcacg tggcagtttg      4020
     tgttatcgca agcatggttc ccatctgcct catattagca gaggattctg agtgttgcag      4080
     tttctccgga gtttcaaacg cgggattatc cagatcctca gcaaagcagc tctctatgag      4140
     aaagtggcag tctgaatggg attgttcaac aaaggggcgt acgacacatg cactgatccc      4200
     caacatcgct gcatggacga gcagaaaaca cggcgaagtg aacttctaca tgactcagtt      4260
     cctctccgac catgggtgtt tccggagtta tcttcacaag taccgtcacg caagctcgcc      4320
     agactgccca gcgtgtgtga gcatcgtgga gtcaacagaa cacgtgcttt ttcattgtcc      4380
     tcgttttgct gaggaacgtc atgaaatcac cgtgaagtgc ggaacaacaa tcaacggaac      4440
     aaacctgacc gagttgatgt taaagaatgc gggaacatgg gaagtcatag caaacggcat      4500
     gcgatcaata ctgttgaagc tgtaagcctt atggaaagcg gatcaacgac ttgggcgttc      4560
     gtaaatagtg ttgtgcgtat tgtgaaagtg tttagtgtat ctatgcacga attgaagtga      4620
     gcctgtaact caagtgaatg cgtactttct gtgcttttgc gtggtattat gagtgtctcc      4680
     aggtttatca ttctgtctcg cgaatgtggt ccaagttgca atagcgagat gtaatgctaa      4740
     tgcatagccc tgccccaaga agcataccga aaggtgaacc catggggaag ggtagatggc      4800
     ccaaggaggg ggtttactgg gtaaaaatca tatgtcaaca cccgtgcgac aacgggagtc      4860
     tttcgaagat tccccctcct tgtaaaacaa aaaaa                                 4895
//
ID   WaldoFs1    repbase;    DNA;    INV; 3185 BP.
XX
AC   AB078939;
XX
DT   11-SEP-2012 (Rel. 17.12, Created)
DT   11-SEP-2012 (Rel. 17.12, Last updated, Version 2)
XX
DE   WaldoFs1 non-LTR retrotransposon.
XX
KW   R1; Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; gag-like domain; WaldoFs1.
XX
OS   Forficula scudderi
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Polyneoptera; Dermaptera; Forficulina;
OC   Forficuloidea; Forficulidae; Forficula.
XX
RN   [1]
RA   Kojima K.K. and Fujiwara H.;
RT   "Evolution of target specificity in R1 clade non-LTR
RT   retrotransposons.";
RL   Mol. Biol. Evol 20(3), 351-361 (2003).
XX
DR   Genbank; AB078939; Positions       1    3185.
XX
CC   5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           331..3183
FT                 /product="WaldoFs1_1p"
FT                 /note="endonuclease and reverse transcriptase."
FT                 /translation="SVYASPNTSIDEFENLLGRMILNIRTKNPIIVAGDFN
FT                 AWALEWGSTFTNKRGRLVLDAFSSLNLVLMNTGNRSTFRGGGGCSIVDLTF
FT                 MSRGLMSAGVSWEVSEHYTQSDHQAILCVLHEHKK*QMPKAANMNGWRAKV
FT                 FEKDTFMVSLEDARVVATSDVKVNIIMSRVALACDAVMPRRLGNKPRQLVY
FT                 WWNAEIAEQRMTLSSSSTTIPASQRKKYV*GSQRAEARRALKLAIKTSKRR
FT                 CAEELCGGVDRDPWGRPYKLVMDKLKSAYGTPIICQEVLRRIVSDLFPFQP
FT                 NGGLAEVECDLSCIPPVTKEELIRACRRLGDNKAPGPDGIPNIALKTAIRA
FT                 CPEMFIDMYNSCLSEGVFPKCWKEQRLVLIPKGGGPPDKSSSYRPLCMLDS
FT                 AGKILERVICDRLDEAIEHAGGLAEYGFRKARSTIDAATLVVDLAREAIAG
FT                 KRWNRGSKNYCLIVSLDIKNAFNSAGWGFISESLVRMSVPGYLRRIMSSYL
FT                 NDRILKYNTDAGPRMYKVTGGVPQGSVLGPLLWNIMYDEVFRLKIPENAKV
FT                 MGFADDIAVVGAAKFTEEIVQTCNETIDIIQR*LESVNLQLAEHKTEAVLV
FT                 SSREKKEKVTLRVASYEIXSGDSVKYLGILIDSRLSFREHLLYASTKAARI
FT                 NVTLSRIMPNWGESRSSRRFLLAGVIRSVLLYGAPIWAEALLIKSYRRMLA
FT                 SVYRLSALRVVSAYRTVSDDVVCVTAGIVPIDILARDRQNLYRGGAGQTPN
FT                 AKTDSIKEWQLRWDQSEKGRWTYRVIRNIETWVGRSYGEIDFFLTQFLSGH
FT                 GCFRSYLHRFKLLDSPFCSTCSLEEEDVKHVFFHCPRFLGEREELRLQFGE
FT                 PPTPETMVGFMLKSQDNWETVCSVTARIIKELRRIEMESRILE*ELVQLRP
FT                 LPTKLCLTAVPWEEQRLKRGWVGLVVKNPTLPCSTGYRVSLEDSPHP"
XX
SQ   Sequence 3185 BP; 891 A; 595 C; 892 G; 806 T; 1 other;
     cagtagccag cacatagcgg ggagtagtaa atgcccgatt tttcaaagtg ctctccaggt        60
     agcaaaaaaa aaaaggagat gagggtattg cagctcaatc tcaatcattg tgaagctgcg       120
     caagacttat tgacacaatc cgtgcgcgaa atgaatatag ctgttgccat cttgagtgaa       180
     cattacagag atcgtgacga tgaagtatgg gttactgaca ccgggagagt ggctgcagtg       240
     tgggcctgtg gtatgcatcc tatccaggta aggatgaaag ggcggactaa tggttttgtg       300
     tgggtcaaaa taaataacat ttatatataa agtgtttatg cctcaccaaa tacgtcaata       360
     gatgaatttg agaatttgtt gggtcggatg atcttgaata tccgtacaaa aaaccccatc       420
     attgttgctg gagactttaa cgcttgggct ctagagtggg gcagtacatt tactaacaaa       480
     aggggtaggt tggtgctaga tgccttttcg tcactgaatc tggttctgat gaatactggc       540
     aacaggagta cattccgagg gggtggtgga tgctcgatag ttgatctgac tttcatgagt       600
     cggggcttga tgtccgcggg agtgtcgtgg gaggtcagtg agcactatac tcaaagtgat       660
     catcaagcta tcctatgtgt gttacatgag cataagaaat aacaaatgcc gaaggctgca       720
     aatatgaatg ggtggagggc caaggtattt gagaaagata ctttcatggt atcactagaa       780
     gatgctaggg tggtggccac atcagatgtg aaagtcaaca taataatgag tagagtggca       840
     ctggcttgcg atgcagtcat gcctaggaga ctagggaata aacctcgaca actggtctac       900
     tggtggaatg ctgaaattgc ggaacagcgc atgacactgt cttcgagctc gacgactata       960
     ccagcgagcc agaggaagaa gtacgtttga ggttctcaga gagctgaagc ccgcagagcc      1020
     ttaaagctgg ctataaaaac cagcaaaaga agatgtgcgg aagagttgtg tgggggggtg      1080
     gatagagacc cgtgggggag accctataag ttggtcatgg ataagcttaa aagtgcgtat      1140
     ggaacaccta tcatttgcca agaagtgttg cgtaggatag ttagtgatct attccctttt      1200
     caaccaaatg gtggccttgc tgaggtagaa tgtgacttga gctgtatacc acctgtcact      1260
     aaagaagaac taattagagc ctgtcgcaga ttgggtgaca acaaggcgcc gggtcctgac      1320
     ggcatcccga acatagctct aaaaactgct attcgggctt gccctgaaat gttcatagac      1380
     atgtacaact cgtgtcttag tgagggagtg tttcctaaat gttggaagga gcaacgattg      1440
     gtgctcattc ctaaaggggg gggtccaccg gataagtcat cgtcatatcg tccgctatgc      1500
     atgttagact cagcggggaa aatattagaa cgtgtcattt gtgacagatt ggatgaagca      1560
     atagagcatg ctggaggact ggccgagtat ggttttagaa aggctcgctc aacgattgat      1620
     gctgccacgt tggtggtgga cctagctcgt gaagcaatcg ctggcaagag atggaatagg      1680
     gggtctaaga actattgtct aattgtctca ctagacatca aaaatgcctt caattcagca      1740
     gggtggggat ttatcagtga atcattggtg agaatgagtg tcccaggata tctcagaaga      1800
     atcatgtctt catatcttaa cgacagaata ctgaagtaca atactgatgc cggacctagg      1860
     atgtataaag tgactggagg ggttccgcag ggttctgtgt tgggtccgct tttgtggaat      1920
     attatgtatg atgaagtctt cagattaaaa attcccgaaa atgccaaagt gatgggcttt      1980
     gcggacgaca tcgcagtggt tggggccgcg aagtttacgg aggagatcgt acagacttgt      2040
     aatgagacca ttgatatcat ccagcggtag ctcgagagtg tcaacttaca attggcggaa      2100
     cacaagacag aagcagtact tgtgtcgagc agagagaaaa aggagaaagt tactctaagg      2160
     gtagcaagct acgaaatcga ktctggagat tccgtcaaat acctaggcat cttgatagat      2220
     tctagactaa gctttaggga acatctgctg tatgcaagta ccaaagcggc aagaatcaac      2280
     gtgactctct ccaggataat gccgaattgg ggagaatcga gatctagtcg aagatttctg      2340
     ttggctgggg taataagatc ggtgttgctc tatggagcgc caatctgggc tgaggcactc      2400
     cttatcaaaa gttataggcg gatgctggcc tcggtgtatc gcctaagtgc tctgagagta      2460
     gtgtctgcgt accgcacagt atctgatgat gtggtttgtg tgacagcagg aatagttcca      2520
     attgacatcc tagctaggga tcgtcagaac ctataccgtg gtggtgcagg acagacccca      2580
     aacgcgaaaa ccgactctat aaaagaatgg caactgcggt gggatcagtc ggagaaggga      2640
     agatggacat acagggtcat tcgtaatatt gagacatggg tggggaggag ctatggagaa      2700
     atagattttt tcctcacaca gtttttgtct gggcacgggt gcttcagatc atacctgcat      2760
     cgctttaagc tgctggattc acctttttgc tcgacttgta gtttggagga ggaggatgtg      2820
     aagcatgtct tctttcattg ccctcgcttt cttggcgaac gcgaagagct tcgtctccag      2880
     tttggtgaac caccgacgcc ggaaacaatg gttggcttca tgcttaagtc ccaagacaac      2940
     tgggaaacag tttgtagtgt tacagctagg attattaaag aactacgtcg gatagagatg      3000
     gaatctcgaa tattggagta ggagctggta cagctaaggc ctcttcccac gaagttatgc      3060
     ttgacggcgg tcccgtggga agaacaaagg ctgaagagag ggtgggtagg tttagtggtt      3120
     aaaaatccca cactaccctg tagtacgggc tacagggtgt ctttagaaga ttccccccat      3180
     ccgcg                                                                  3185
//
ID   WORF_DMi    repbase;    DNA;    INV; 4174 BP.
XX
AC   AY144572;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   07-SEP-2012 (Rel. 17.09, Last updated, Version 3)
XX
DE   Drosophila miranda non-LTR retrotransposon worf, complete
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   non-LTR retrotransposon worf; WORF_DMi.
XX
NM   WORF_DMi.
XX
OS   Drosophila miranda
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   obscura group; pseudoobscura subgroup.
XX
RN   [1]
RA   Bachtrog D.;
RT   "Accumulation of Spock and Worf, Two Novel Non-LTR
RT   Retrotransposons, on the Neo-Y Chromosome of Drosophila
RT   miranda.";
RL   Mol. Biol. Evol 20(2), 173-181 (2003).
XX
DR   Genbank; AY144572; Positions       1    4174.
XX
FH   Key           Location/Qualifiers
FT   CDS           188..1249
FT                 /product="WORF_DMi_1p"
FT                 /translation="MAIVCSAKKCEFGGVIIGDSFLSCWLCDNFAHIKCAG
FT                 GGNFGRLNDLISKRMGLSWSCLACREIEAEMRTFMRQTRTGFLDVRKQFVA
FT                 LNEKFLALESQFLGLKLLSESPRRKIPHNDTNLLQPNPIGTPASHLHPSEA
FT                 FPCRHATPLSVNPPTVAPEFFTPSNVLPSSTQLPNSINPIPAVSVAVTSDA
FT                 VSAPSAGVLVADDVLPIPAPIPAPIPAAIPTPIPATAIAANSSALVPRSLL
FT                 GVAPPSRSRSGLQLKAVVPRKAIFVSRLIPEATTEDVKQHLATKLNTSPVD
FT                 IVVTKFSFKHKRNISSFKILLPDSLLSCSLEPSIWPEHTIVHEFLLKDSNS
FT                 NPRITEHAPKN"
FT   CDS           1252..4086
FT                 /product="WORF_DMi_2p"
FT                 /translation="MYYFSMHYQNVRSLLGKLRQIHTNSASFDFDAIAFTE
FT                 TWLNSSVNDHEIFIDSYTIYRMDRPSFAGGVLIAVKSVFSSELFPFNNIHG
FT                 IEFVAVKVRVGSAFFYLTCSYIPPRSDAELYLHHLSAINNVVSTLGCNDRI
FT                 IVMGDFNLPFLSWLPCNDANLLFPNCHNDFINGLTDISLVQINAVKNIRDR
FT                 LLDLVFVNDGSLTTVSRASPISLPEDPYHPTLLISLECTQSGGADSSMAPC
FT                 HIKCFRKTNFIDLDLHLSRVDWSFLYSLPNIDATVNSFYSSIYSALNTFVP
FT                 DITVPVSSKPPWFSKYLSYLKNNKSRLYKKYQKSGSTLALALYSSARSLFL
FT                 AVNSQCYNHYLSQCSSNFRSDPKKFYSFVNSKRKSNVFPPSLHYQNKTEAS
FT                 AVGIANLFANFFQTTYSSHIYNASTPYPYQLPQANSIFLPFFEESVVLEGL
FT                 SSMDISFSAGPDKVPSCILKHCAQSLCKPLTFLFNLSLEQSCLPVIWNESY
FT                 IIPLHKKGSRSNIENYRGIAKLSAIPKLLEFLVTRQLQHLCCSLISPSQHG
FT                 FFRHRSTSTNLLEFSNLIHRGFQIGLQTDVVFTDFSKAFDSVNHALLIQKL
FT                 SLLGFPTNLLDWILSYLSNRTQRVLFSNVLSNTVNVTSGVPQGSHLGPLLF
FT                 ILFVNDLPQVITYSTTLMYADDVKICLSYSDWYLHTRLQLDLSELLLWCST
FT                 NLLFLNLSKCKLMTFYRRAPHFVSYVLGNHVLERISSSNDLGVLFDHKMCF
FT                 NTHIAATVNKAKGVLAFIKRWSKEFDDPYVTKQLYISLVRPILEYCSCVWS
FT                 PQYKEQQAVIESVQKQFLIFALRNFNWDSGRILPPYRSRLNLIDLPSLHHR
FT                 RICNGVMFVHKLLLGTVDSQTLLGQIDLAVPSRPTRTFRPIRLPICRSNYA
FT                 DHEPFRVLCHNYNSLCLTLSPELSLKLIACNIYNHLNLANF"
XX
SQ   Sequence 4174 BP; 1010 A; 1004 C; 752 G; 1408 T; 0 other;
     ttttcttttg tgtctctgct ttggtgagtt taccgctcgt tttctgcact tcgttggatc        60
     atctgctttg aattattgcc gctgcagctg attgtctggc tcgctctgct gtctgctctc       120
     ctactttacc tgcgatctca ctccgttctc ttattattcg tgcacagtga ttctactgct       180
     gtcaataatg gcaatcgttt gtagtgcaaa gaaatgtgaa ttcggtggtg ttatcattgg       240
     tgattcattt cttagctgct ggctgtgcga caattttgcc cacataaaat gtgctggtgg       300
     tggaaatttt ggccggctga atgatctgat ctcgaaacgc atgggcctgt cttggtcatg       360
     tctggcttgt cgggagattg aggccgaaat gcgcacattt atgagacaga ctcgaactgg       420
     gtttctggat gtccggaaac aatttgtggc tctcaacgag aaatttcttg cccttgaatc       480
     acagtttctt gggctcaaac tcttgagcga atcgcctaga cggaaaattc cgcataatga       540
     taccaatctc ttgcaaccta atccgattgg tacgcctgcc tcccaccttc atccatcgga       600
     agcatttccg tgtaggcatg ccacgccgtt gtctgtaaat ccgccaacgg tggctccgga       660
     gttctttaca ccgagcaatg tgcttccttc gagcacccaa ctccccaaca gcatcaatcc       720
     catccctgca gtttctgtgg ccgtcacttc tgacgcggtg agtgctccta gtgcgggtgt       780
     gctggttgct gacgacgtct tgccaattcc tgctccaatt cctgctccaa ttcctgctgc       840
     aattcctact ccaattcctg ctacagccat tgctgccaat tcctctgccc ttgtaccgag       900
     atctctttta ggtgtggctc caccatctcg atctcgctcg ggacttcaac ttaaagcagt       960
     ggtccctcgg aaagcaatat ttgtttctcg tcttattcct gaggctacaa cggaggatgt      1020
     taaacaacat cttgccacta aacttaacac ttcgcctgtt gatatagttg tgactaaatt      1080
     ttcatttaaa cataagcgca acatatcatc atttaaaatt cttctccctg attctttact      1140
     atcctgttct ctagaaccgt caatatggcc tgagcataca attgtgcatg agttccttct      1200
     caaagattcg aactcgaatc caagaattac cgaacatgct ccaaaaaact aatgtactat      1260
     ttttccatgc actatcagaa cgttcgcagt ttgctgggaa agttgcgtca aattcatact      1320
     aatagcgcgt cctttgattt cgatgccatc gcgtttaccg aaacctggct taactcctct      1380
     gtcaatgatc acgaaatttt cattgatagt tacactattt atagaatgga ccgcccatct      1440
     tttgcaggtg gggttctgat tgcagttaaa tctgttttct catctgagtt attcccattc      1500
     aataacattc atggaattga atttgttgca gtcaaagttc gtgttggctc cgcatttttc      1560
     tatttaacct gctcttacat tcctcccagg tctgatgctg agctttactt acaccacctt      1620
     tcagcaatta ataatgttgt ttctacatta gggtgcaatg atcgaattat tgtcatgggg      1680
     gactttaacc tcccatttct ttcttggctg ccttgtaatg acgctaacct gttgtttccc      1740
     aattgccata atgactttat caatgggcta acggatattt cccttgtcca aattaatgcc      1800
     gttaaaaaca ttagggacag acttcttgac ctcgtttttg ttaacgatgg ttctcttact      1860
     actgtatcta gagcaagccc aatatctctc cctgaagatc cttaccatcc aactttgttg      1920
     atatcactgg agtgtacaca atctggaggt gctgacagtt ccatggctcc ttgtcacata      1980
     aagtgttttc gcaaaacaaa ctttattgat ttagatctac atctctcgcg tgttgattgg      2040
     tcgtttcttt attcattacc gaacatagat gcaactgtta actcgtttta tagttctatt      2100
     tactccgccc ttaatacgtt tgttccagat atcactgtac ctgtatcgtc caagcctccc      2160
     tggttctcca agtatttgtc atacttaaaa aataataaat cccggctcta taaaaagtac      2220
     cagaagtcgg gctccacgtt ggccttagct ctatactcct ccgctcgctc tctgttcctt      2280
     gccgtcaata gtcagtgtta taatcattac ctttcacaat gtagtagtaa ttttcgtagt      2340
     gatcctaaaa aattctattc gttcgttaat tctaagcgca agtcaaacgt ttttcctccg      2400
     tcccttcatt accagaacaa aacagaagct tctgctgttg gtattgcaaa tttattcgct      2460
     aactttttcc aaacaacgta ctcgtctcat atttacaacg catccactcc gtatccgtac      2520
     cagctacctc aagctaacag tatttttctg ccctttttcg aggaaagcgt tgttcttgaa      2580
     ggtttgtcat ctatggacat atcgttttct gcgggtccag ataaggtacc aagttgcatc      2640
     ttaaaacact gtgcccagtc cctttgcaag cccttgacct ttctcttcaa cctctccttg      2700
     gaacagtctt gtctcccagt aatttggaat gagtcctaca tcattccgct tcacaaaaaa      2760
     ggttcaagat caaacattga aaactatcgt ggtatcgcaa agctttccgc catcccgaag      2820
     cttcttgagt tcctggtcac ccggcaactg caacatcttt gttgcagctt gatatctccg      2880
     tcgcaacacg gttttttcag acatcgttca acatcgacta accttcttga gttttctaac      2940
     ctaatccacc gtggttttca aattggtttg cagacggatg tagtttttac ggacttcagc      3000
     aaggcattcg attctgtgaa ccatgctctg cttattcaaa agctctcctt attagggttc      3060
     ccaacgaatc ttctagattg gattttgtcc tatctctcta accgtactca acgtgttttg      3120
     ttttctaacg tgttgtcaaa tactgttaat gttacttcag gtgtgccaca gggaagtcat      3180
     ctgggcccgc ttctgtttat tttatttgtg aacgaccttc ctcaagttat aacatactct      3240
     actacactaa tgtatgctga tgatgtcaaa atctgtcttt cttactctga ttggtatttg      3300
     cacacacgcc ttcaacttga tctaagtgaa ctactattgt ggtgttcaac taatcttctt      3360
     tttctgaacc tttccaaatg caaacttatg acattttacc gtcgcgctcc tcattttgtc      3420
     tcatatgttc taggaaatca tgtccttgag cgaatttcga gttcaaatga cctcggagtc      3480
     ctttttgatc ataagatgtg tttcaacacc catatagctg caactgtaaa taaagctaag      3540
     ggtgttttag cgttcatcaa gcgttggtcc aaggagtttg acgacccgta cgttacgaaa      3600
     caattgtaca tctcgttagt acgtcctata ttggagtatt gttcttgtgt gtggagcccg      3660
     cagtataaag agcagcaggc tgttattgaa tccgtgcaaa agcaattttt aatttttgcc      3720
     cttcggaact ttaactggga ctcgggtaga atcttgccac cctaccggtc taggctaaat      3780
     cttattgacc tgccgtcgtt gcaccatcgc agaatatgca atggcgtaat gttcgtgcac      3840
     aagctccttc ttgggactgt tgactcccaa actctcttgg gtcagattga cttggccgtt      3900
     ccatccagac ctacccgtac ttttaggcct atccgtctac ccatatgtag gtctaattat      3960
     gctgatcatg aaccttttag ggttttatgc cataattata actccctctg tctaacccta      4020
     tcccctgaac tgtctcttaa actaattgca tgcaatattt ataatcattt aaatttagct      4080
     aacttttaac ttatcttttt ctgcctttag taactaagta ccattattaa cagataattt      4140
     gttaatttaa taaataaata aataaataaa taaa                                  4174
//
ID   WUJIN       repbase;    DNA;    INV; 185 BP.
XX
AC   U88306;
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   20-JAN-2021 (Rel. 26.01, Last updated, Version 2)
XX
DE   Mosquito miniature inverted-repeat transposable element Wujin.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   MITE; Wujin.
XX
NM   WUJIN.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-185
RA   Tu Z.;
RT   "Three novel families of miniature inverted-repeat transposable
RT   elements are associated with genes of the yellow fever mosquito,
RT   Aedes aegypti.";
RL   Proc. Natl. Acad. Sci. U.S.A 94(14), 7475-7480 (1997).
XX
RN   [2]
RP   1-185
RA   Tu Z.;
RT   "WUJIN.";
RL   Direct Submission to Genbank (04-FEB-1997)Entomology, University
RL   of Arizona, Tucson, AZ 85721, USA.
XX
DR   GenBank; U88306; Positions       1     185.
XX
CC   26 bp terminal inverted repeats; TA target site duplication.
XX
SQ   Sequence 185 BP; 55 A; 36 C; 43 G; 51 T; 0 other;
     cagtgaaacc tccatgagtc gatattgaag ggaccatcga ctcatggaaa tatcgagtca        60
     tggaacagca atcctttgga aagctgcttc tagggaccat catagtaacc atgaaatttt       120
     gtttttagta tggttccatg agtcgatatc gagtcatgga acatcgactc atggaggtat       180
     cactg                                                                   185
//
ID   WUKONG      repbase;    DNA;    INV; 431 BP.
XX
AC   .
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   17-JAN-2017 (Rel. 22.01, Last updated, Version 2)
XX
DE   Wukong, Miniature Inverted-repeat Transposable Element in
DE   mosquito.
XX
KW   Sola1; Sola; DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; MITE; Wukong.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-431
RA   Tu Z.;
RT   "Three novel families of miniature inverted-repeat transposable
RT   elements are associated with genes of the yellow fever mosquito,
RT   Aedes aegypti.";
RL   Proc. Natl. Acad. Sci. U.S.A 94(14), 7475-7480 (1997).
XX
RN   [2]
RP   1-431
RA   Kojima K.K. and Jurka J.;
RT   "Classified as a non-autonomous Sola1 transposon.";
RL   Direct Submission to Repbase Update (08-OCT-2010).
XX
DR   [2] (Consensus)
XX
CC   4-bp TSDs. TAYA target site duplications. [1] The consensus is
CC   similar to Sola1 elements; thus classified as a nonautonomous
CC   Sola1 element. [2].
XX
SQ   Sequence 431 BP; 144 A; 68 C; 76 G; 143 T; 0 other;
     ctgcccataa ctgcatattt gtaacattcg acaaaagtag gcactgagta aatggaatac        60
     caagtgtaca tttcattgca gtatgggagg aaactaaaat ttcaaaaaat taccaggaac       120
     tcaaaagtgc ttatttgagg ctgatatttt gtacaactca taccacatac taggtgaata       180
     gtcagaaaat aattctgata gaaatttcat tgctattaca ttacgaggct catttataat       240
     ctcaatgtga ctgttatgcg gttataattg ctaatgtgac aaaacaactt ggtatttttt       300
     tcgaattttc tagaacaatc tcacagattt cattaagttg atcggaagta tttatcattg       360
     gatgactctc catggtatta actccatttt gtcaaaaatg tcgaatgtga ctgttatgca       420
     gttatgggca g                                                            431
//
ID   WUNENG      repbase;    DNA;    INV; 257 BP.
XX
AC   U88303;
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   21-AUG-1997 (Rel. 2.07, Last updated, Version 1)
XX
DE   Mosquito miniature inverted-repeat transposable element Wuneng.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; MITE;
KW   nonautonomous DNA transposon; Wuneng.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-257
RA   Tu Z.;
RT   "Three novel families of miniature inverted-repeat transposable
RT   elements are associated with genes of the yellow fever mosquito,
RT   Aedes aegypti.";
RL   Proc. Natl. Acad. Sci. U.S.A 94(14), 7475-7480 (1997).
XX
DR   GenBank; U88303; Positions       1     257.
XX
CC   19 bp terminal inverted repeats; TTAA (TTAT) target site
CC   duplications.
XX
SQ   Sequence 257 BP; 80 A; 51 C; 43 G; 83 T; 0 other;
     ggctaagtag cccgtcattc attttggcaa caataatgac ttttcagctt gcatttcaaa        60
     gtggtaaaac tcagtcttca tagattaaat tgacttgaaa aagtatcact gtacgcgcta       120
     acatgcataa agtatgctca tactttttca gctttgtccg tgcaaaacta tctgattttc       180
     tttgattcga aatcgtgaga tgaattagca acaataatca acgacgcgta caaatttcaa       240
     tgacggctta ctttgcc                                                      257
//
ID   XDMR        repbase;    DNA;    INV; 361 BP.
XX
AC   .
XX
DT   26-JUL-2000 (Rel. 5.06, Created)
DT   06-AUG-2007 (Rel. 12.09, Last updated, Version 2)
XX
DE   XDMR is a dispersed repetitive element.
XX
KW   SAT; Satellite; Simple Repeat;
KW   Dispersed middle repetitive element; DMDMR; XDMR_DM; XDMR.
XX
NM   XDMR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-361
RA   Waring L.G. and Pollack C.J.;
RT   "Cloning and characterization of a dispersed, multicopy, X
RT   chromosome sequence in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 84(9), 2843-2847 (1987).
XX
RN   [2]
RP   1-361
RA   Kapitonov V.V. and Jurka J.;
RT   "XDMR.";
RL   Direct Submission to Repbase Update (30-JUN-2000).
XX
DR   [2] (Consensus)
XX
CC   This is relatively ancient family of repeats. Originally, it
CC   has been described as an X chromosome specific repeat [1].
CC   However, multiple copies of XDMR are present in other
CC   chromosomes also. XDMR forms dispersed clusters.
XX
SQ   Sequence 361 BP; 135 A; 55 C; 47 G; 119 T; 5 other;
     tttgcaaaaa attgaaaaat cctagaattc ccaaacttga atgcaaatcg attgggattt        60
     aaaaaacaaa ctcaacgagg tatgacattc catatttggg tmattatttc caatgttwtg       120
     atcaaaatac cgaatatttt tttcacaaaa aatcaggaaa acnatttttg gcaaaaaatt       180
     caatatttaa gttgggtttt ttgggtataa cttgactaaa aatggtcaca gagcaaaaag       240
     aattaccatt ttatactcct tatwaccaat actaaccayc cctatcactt ttaaacggat       300
     tttgtaaaat taatttttgg ccaaattttc gcattttttg taaggggtaa catcatcaaa       360
     a                                                                       361
//
ID   YAMATO_BM   repbase;    DNA;    INV; 2314 BP.
XX
AC   AB042121;
XX
DT   17-NOV-2004 (Rel. 9.10, Created)
DT   17-NOV-2004 (Rel. 9.10, Last updated, Version 1)
XX
DE   Bombyx mori Pao-like retrotransposon Yamato, putative polyprotein
DE   region.
XX
KW   BEL; LTR Retrotransposon; Transposable Element; YAMATO_BM;
KW   pao-like retrotransposon; putative pol domain;
KW   reverse transcriptase.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Abe H., Ohbayashi F., Sugasaki T., Kanehara M., Terada T.,
RA   Shimada T., Kawai S., Mita K., Kanamori Y. et al.;
RT   "Two novel Pao-like retrotransposons (Kamikaze and Yamato) from
RT   the silkworm species Bombyx mori and B. mandarina: common
RT   structural features of Pao-like elements.";
RL   Mol. Genet. Genomics 265(2), 375-385 (2001).
XX
DR   Genbank; AB042121; Positions       1    2314.
XX
SQ   Sequence 2314 BP; 612 A; 702 C; 670 G; 330 T; 0 other;
     ggaagtcctc gcgccgtgcc atcacctcac cgacctccgc catcacttca aaacgagcta        60
     cgcctcgccg aagatactga tcggccaaga caactggcac ctgctggtga cggaggagat       120
     gcggacggga cgacgcgatc aaccagtggc gtctcgtact ccgctcgggt gggttgtgca       180
     cggagcacgc ccgggaggca agagacagcg cgtcaacttc gtaggacacg cgacgacggc       240
     cgacgcgaac atggacgaag ccctcaagca ctacgtcgcg atcgagggac tcaacgtcgc       300
     cgctaagacg ccgaagaacg acccggacga gcgtgcgctg aagatcctgc gagagaccac       360
     tcaacagcaa cccgacggcc gctacgagac cgcactgctg tggcgtgagg agagcctgaa       420
     gatgcccaac aatcttgaag ccgcaatgaa tcgcctgacg tccgtagaga agaaactgga       480
     gaaggatcca aacttgaaag agcgctacaa gcaacgaaca aacgcactgg tagcgaaggg       540
     atacgccgaa gtaactccgt cgacgggtac gaaggatcga acccggtact taccgcactt       600
     cgacgtgacg catcccaaga agcaggagaa gattcgcgtc gtgcacgacg ccgatgcgaa       660
     aaatagaggg aagaagccca aacgacatcc tgctcaccga cccggacctg ctgcagtcgc       720
     tacccggagc gatgatgcgc ttcaggcagc acgccgtcgc cgtctccacg gacatcgcgg       780
     agatgtttgt acagataggc gtccgaagcg aggaccgcga cgcgctccgg tacttgtgga       840
     gggaggaccc ttcacgagag cctacagaat accggatgag gtccatcatc ttcggcgcga       900
     caagctcacc tgcaaccgcc atctgcgtga agaaccgact gcagtacccg gacgccgccg       960
     acctcaagct ccacacgtaa gtggacacca acaagtacgc ccacgacgcc gcgttgtact      1020
     ggcgcgtgga gacgcccgac ggggagatga ggacctccct agccaaagcc cgagtcgcac      1080
     ccatgaagcc aacatcgata ctgcgtctcg agctacaagc cgacgtgatg ggaagccgca      1140
     tagccgcggc cgtcacggaa aaacactata ggaagccaga cacgagtgtt ctggaccgac      1200
     agcgccacca tagaggaaaa cagcactgtg gaggaaaggc gctaggtccc cacaagagag      1260
     aatgtcgccg acgacgctac gagagaaata cccgtcggct ttgatggaaa ccaccgctgg      1320
     ttcataggcc cggaatacct gagacggcat ccggatgatc ggcccgtaca acggactgca      1380
     agaagggcag aagagacggg tgaagagaag tgcgcaatgc tcgccgtgag cagagagagc      1440
     ctcggcgaag cgatcccgga cccaagacgc ttctccaagt gggagaagta cctgcgtgca      1500
     acggggcgaa tactacaatt cgtcgaccta tgccgcagaa gtcgcgagcg cactcattac      1560
     aagaggacca ggcggaaccc gcgttcggac ccgacgtggg agaagaatag aaagaagacg      1620
     acttcgaaga ccccgctgaa cacaccgcgg acgccagagc aagcagtcat tcaatggaag      1680
     actttagacg ccgacacgct tcgacgcgcc gagacgctca tttggcgaca gagccagcgg      1740
     gcggccttcg aggaagagat tttgacgctc cagcgaggga aacaaatatc cccagcgagc      1800
     cgactgcgaa acttgtccgt aacttacgcg gacgggatac tgaaaataaa cggacgcatc      1860
     ggcaacatag agggagctga cgtcatcacc tcgcctctcg tgctagacgg atcccgacgc      1920
     gaaacgagac tgatgataga cttcatccat agaaagatgc accacgccgg aaccgaagcc      1980
     acgatcgccg agtgccgaca gtcgtactgg gtcttacgcc tacgcccagt gacgcggagc      2040
     gtaatccaca actgtcttcc gtgtcgtatc cgcaaggaca ctccgccgcg tccagccaca      2100
     ggcgatcacc caccgagcag actggcacac catcggcgac catttacata cgtgggcctc      2160
     gattacttcg ggccttatca agtgaccacc ggcagaagca cccagaagca ctacgtggcc      2220
     atcttcacat gtctcactac gcgtgcggtg catttagaac cggcagcgag cctcagcacg      2280
     gactcagcgg tgatggcacg gcgcgaggac ttcc                                  2314
//
ID   YOYOI       repbase;    DNA;    INV; 7065 BP.
XX
AC   U60529;
XX
DT   11-JAN-1999 (Rel. 4.00, Created)
DT   11-JAN-1999 (Rel. 4.00, Last updated, Version 1)
XX
DE   Ceratitis capitata yoyo retrotransposon gag-like, pol-like and
DE   env-like genes, complete cds.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; YOYO; YOYOI; YOYOLTR; env; gag;
KW   internal portion of LTR retrotransposon; pol; internal portion.
XX
OS   Ceratitis capitata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis.
XX
RN   [1]
RP   1-7065
RA   Zhou Q. and Haymer S.D.;
RT   "Gypsy-like retrotransposon in the Medfly.";
RL   Unpublished.
XX
RN   [2]
RP   1-7065
RA   Zhou Q. and Haymer S.D.;
RT   "YOYOI.";
RL   Direct Submission to Genbank (11-JUN-1996)Genetics & Molecular
RL   Biology, University of Hawaii, 1960 East West Rd, Honolulu, HI
RL   96822, USA.
XX
DR   GenBank; U60529; Positions     317    7381.
XX
SQ   Sequence 7065 BP; 2883 A; 1431 C; 1034 G; 1717 T; 0 other;
     tggcgcccaa cgctccagtc gcggacggta tacgtagtgc ataccttcga aacgtagtgc        60
     atcacgcgcg aacctaagtg aacagtgcgc gtacgtaaag gactctaccg tcaaagcaga       120
     agcgacagga cgaaccaaaa cgggtaaact tcggtggaag ataacccaaa cccaccagaa       180
     ggcgcatcac cccggaacca tagtagcgga agcaaactgg ataattccca atgcgtcgtg       240
     ggattttaac gtaagaaata gattaagaca taaatataga taacgttgtg aaaaaaaaag       300
     aaaagttaaa aaaagtacta attaaaatta agataaggaa aattatattt aaaaaggaaa       360
     agagaaaatt tgtgaaaaaa agaaaagtta aaaaagtact aattaaaatc aagataagga       420
     aaatattatt tgtgaaaaaa aaagaaaaat taaaaatact gattaaaatc agggaataag       480
     gatcataata aaacaatttt aaagcataca agataatatt aaaggcttgt acatccttaa       540
     ataaacaaac cctaaagctt tcggcttata acataaccat atctctgcga ttcactccat       600
     aaagggggac cctccagaga atattaaaat aaaaagacag ttaattaaaa atatttaaaa       660
     aaataaaatt aaattaaata aaatggcaca taacgacatt attagaccct cgatgcttgc       720
     atccgcacct agagcagcag ctccccccct acagcctaat ccactacagc ctaatccacc       780
     tacttcggca aacgccacac cagaacttag aaacataatt cgggatttaa tgagagaaat       840
     attggccacc gaggaagcca atattgtaag aacatcaacg caaacaatga ccgaccaaat       900
     aatcgaagaa cggtttaggg acaatttgac agacatggac aaagttcgag acgtggtaag       960
     atccctacgc gagtttggcg gcaatccagc ggaatacagc agctggaaaa aaagtgtcga      1020
     gcgtatcctc aaaatatacg aacctaacat gggttcacca aaatattttg ggatactcaa      1080
     cgttatccgc aacaaaattg tgggtagcgc tgatgccgct ctagaatcct ataatacacc      1140
     cttaaattgg aaagcgattt ccaaatgcct cacaatgcac tatgccgaca aaagagattt      1200
     gagcactctc gaataccaga tgacttgctt actccaaggc aggagaacag tgcatgagtt      1260
     ttacgcggag gtatactcac acctttcctt aattctaaat aaaattgcct gcatggacat      1320
     caatgaagaa gccatgcgta tccttaccca cacatatcgc gataaggcac ttgatacctt      1380
     cgtcggggga ttgtcaggcg atctatcaag gctacttggt atgaaagagc cagccgatct      1440
     acctgaagca ctacatctgt gcatcaagtt agaaaatcaa aattttagaa caatacacgc      1500
     gaataaccaa tacagtttac caagaaaacc taatttacca ctcttaccat taggaatgca      1560
     tcatcaacat aaacccccaa taccacagag aaacataaat cacaacaacc agccctttta      1620
     tccacaatta gcccatatac cccaagcaat aaatccaatt aatcgttttt cccagcatcc      1680
     ccaataccgt caacaccaat atcaatacca tccccaatat caataccaac ctcaatatca      1740
     acagcaacaa cgctttagac ccaatcaatt cttcaatact ccaccaaggc ctatacaacc      1800
     aaaaccacca atcccaatgg aagttgacga atcattacaa actaggaacg ttaactacat      1860
     gaacagacca aacaaaatct tcgccggaaa aagacccata gtaccttcaa accaaatacg      1920
     acaacccttc aaacaaagta gaatcaataa cataatagca gtctcagcac ctcaagacga      1980
     agaacagaca tctaaggatt actatgacca atactcagct caagataata attcaaacga      2040
     taatattcta gaagaaaacg aatacgaatt ttccgatata cattttttag attaacgaac      2100
     tccacgttac catactttca atgtaaagat agtaacggag atattttaaa atttttgatt      2160
     gatacagggt caaataaaaa ttatattcag ccaaacctag taaaaaactc aattcccaat      2220
     aatgatattt tttatgccac ctcagttgga ggaaaaatca aaataaccca ccacactttc      2280
     attgaccttt tcggactaaa agacgaaaat ctcaaatttt tcgtactacc aacattaaaa      2340
     tccttccacg gaattctcgg taacgacagc ttaaaacagt tagaagccat aatttttaca      2400
     tcaaaaaacc acatgctaat aaaaaataag attaaaatag caattaaaca acaaaatgcc      2460
     acatcagtaa acaacgtcgg aataagaaca acgcacctta cagactcaca agcagaaaaa      2520
     cttcgaaatc tatgtcaatt gtacccaaaa ctttttttgg aaccagacga aaaattaaca      2580
     tacacaacag tagtaaaagc aacaatcaga acaactacag acaacccagt ttattctcga      2640
     tgttaccctt atccaatgtc tttaaaatcc gaagtcgaaa gacaaatcaa caaacttctg      2700
     gaagatggca tcataagacc atctcgctct ccttataatt ctcctgtatg gatagtagac      2760
     aaaaaaccag actctttagg aaataaacaa taccgacttg ttatagacta tcgaaaatta      2820
     aactctgtta caattgcaga ccgttatccc attcccgaaa ttaatgaagt cctttcccac      2880
     ttaggaagta atacattttt ttcagtcatc gatttaaaaa gtggttttca tcaaattccc      2940
     ttaaaaaact cggacataga aaagaccgct ttctccataa ataatgaaaa atatgaattt      3000
     accaggctgc catttggctt aaaaaatgcc ccttcaatat tccaaaggac gttagacgac      3060
     attttaagag actacatagg acaatgctgt tacgtataca ttgacgatat aattatattt      3120
     agtagaaatg aaaaagaaca ttcaacccac ctaaaaaata ttttcactac actagaaaaa      3180
     gctaatatga aggtacagtt agacaaatgc aaatttttcg aaaaagaggt agaattccta      3240
     ggattcatag taacaccgga aggaataaaa acaaaccctt caaaaataga ggctattcaa      3300
     aatttcccaa ttccacgaaa cctcaaagaa ctcagatcct ttttaggtct gtcgggttat      3360
     taccgtcgct ttgtcaaaga ctatgcgaag ctcgctaaac ccctgacagc ccttttaaga      3420
     ggggaggaag gacgtgtgtc caaaagtcaa tcagctagag cgcacataac actaggcgac      3480
     gaagcacttg cagctttaga aaagataaaa aacgtgttaa tttcaagaga tgttatgctg      3540
     acctacccca acttaaataa agattttgag cttacaactg atgcttccaa ttacgcaata      3600
     ggcgctgttc tttcgcaaga agaccgacca atcactttca tctctaggac tcttacgaaa      3660
     acagaggaaa attacgcggc taacgagaaa gaaatgctcg ccatcatatg ggcattgaag      3720
     tccctgcgaa attacctcta cggatcagca aaagttaaaa tctttacgga tcatcaaccc      3780
     ttaacatatg cactaagcaa caaaaacaat aatagcaaaa tgaaacgatg gaaggcaatc      3840
     ctcgaagaat ataactatga actaaaatat aaaccaggca aaactaatgt agtagcagac      3900
     ggactatcta gaccaccaca gcaggaccaa attaattcct tgacaccgac tcaacatagc      3960
     gacgaaagct caccgcaaaa cctcattcct tatacggacg ccccgattaa tgctttcaaa      4020
     aaccagttat tcctaaaaac cgcagacacc tcgtcctacc aattcttaat acccttccca      4080
     acctaccata ggcatatcat tgaagaaccc gaatatacag aagaaaattt aacaaatcat      4140
     ctaaagcgct atttaaatcc ttcagttacc aatgcaatta ttacagacga ccatatttta      4200
     ggtagaatac aaaacataca tccaattcac ttcagcagat acagaataaa atatacgcga      4260
     aaaatagtaa aagacttagt acgagaatct gaacaggaat ccgaaatagt taaagaacac      4320
     aaaagagcac acagaagtgc aacggaaaac aaagcccaaa ttttagaaaa tttttatttt      4380
     cctcaaatga attcaaagat taataaaata attaagcaat gtaaaatatg tctcgaaaac      4440
     aaatatgaaa ggcacccttc aaaactagtt ctaaaagcaa ccccagttcc taattatccc      4500
     ggacatatag ttcatatcga tatttaccac accaataata gagtaatcct tacagccgta      4560
     gacaaatttt cgaagtacgc gcaagctaga atagtcaaat caagagcaac agaagacata      4620
     aaactaccct tacaagatct actcacatcc ttcggaattc cagaaaaaat cgtcattgac      4680
     aacgaaaagt cattaaactc atcctccata gtatttatgt tagaaaacca atacagtatt      4740
     gaaattttta aaacacctcc ttatactagt tcagtaaacg gtcaagtaga gcgttttcac      4800
     tcaaccctta ccgaaataat gcgttgtaca aaagcagaga acacccacaa tagttttgaa      4860
     gaattactaa atagatcaat atgcaaatat aaccactcaa ttcattcaac cacgaaaaag      4920
     aaacccattg aaatcttctt tggtagaagc gtttatagtg acccatcgtt attagaaaag      4980
     gatagactcg acaatattaa aaaaatagtt aacaaacagg aaaaagacct taccttccac      5040
     aacaaaaaga ggacagaagt aaaagcatat tccagcaatg acattatcta tgtcaaaatc      5100
     aataaaagaa taggcaataa actcacaccc agatataaaa aggaaatagt tctcgaagac      5160
     aatggtaata cagtcacaac aaaatcagga aggtcggtgc ataaaagtca tatcaaggct      5220
     tcataacaag aaccaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaactata ataataataa      5280
     taaaactaat aaaataaaat ctaaactaaa taattttata atataattaa ggcaattaaa      5340
     caaagaaaat actaaaggaa aaagccatta agtaagaaat aaataaaatt tagcaaatag      5400
     gagataaagg aaattagttt taaaatcaat cgaccaaaat gccataggcg gtgcgatttt      5460
     agattaatta atagcctaga aatcattaac caatcgaatc gtcattaaag gacatatata      5520
     caaattaaat ttttcagtct cttcatctgc atgtcctatg cagacataca aatccacgac      5580
     tattcctcat cccatttaat aaccattgac aatggctact ccaaaatcaa ggacggtacc      5640
     ttaaatttta tccatatcat tgacattcaa gcctatcgga acgttttaga aaatattact      5700
     gacatgatag aaaagagtta cccaccagaa aatcccatat atcctacctt acaacacgaa      5760
     gctcaacaag cattagaaat gttggaaatt gtggaaccca tccagaatcc tagaattaga      5820
     agatcctttg atatccttgg tactgcttgg aaatacctag caggaagccc tgatcacgac      5880
     gacttgaata tgattaataa caacttagat aaacttataa caaataataa caatcaaatt      5940
     tttataaata atgctgttaa aaaccaaata aataaattaa ctgaaataac taataacata      6000
     ctacaatcga ttaaaaatga taacatgatt gcaaacgaaa tagcgttaaa tttacaaaat      6060
     agattaagat tgattaaaga agaaatcata aatataaaat atgccataca atgggctaga      6120
     ctaggaatcg ttaatactat cattttaaat aaaaaggaaa ttgaaacatt tgtaaaagaa      6180
     tttaataaag aaaatatgcc cttcaatact gtagaggagg ctttagaatt agcagatatt      6240
     aatgtattaa gtaattcaac aacaatttta tatattttga aaataccctt aacgacaagg      6300
     gaagtttata ataattatat aataaaatct gtaataagaa atgatgttat gataaatttg      6360
     aaatttaaca atgtacttaa aaacaaaaat acaatatatg gaattaaaaa ccaatgtaaa      6420
     aaatataata aagttagtat ttgtaagcaa gaagaattgt tagatttaag taatgatttt      6480
     tgtatatcga aattaataaa aagccaaaac tcttcttgtc acatggtaaa ctctcaccac      6540
     ataccaagac acgagctaat cacgcccgga atcattttcc tcaacgacta tcatggtaac      6600
     atcgttatga atgacaacat ccgaatcatg aacggcactt acatcattaa tttcagaaac      6660
     gcatcgatta ccatcaatga gcgaacatat aagaactttg aatcaccagt aatgaaagtg      6720
     atgccagcaa ttgcgcaacc aacaccaata gaagaaagca ttacaaagct tctctccctg      6780
     gaagcgctca gcgagctaaa cgtaaattac cccgtagaaa tacattcact gcaaatagaa      6840
     agaaccgtga atcgaatttc ttcaggaatt actcttctta tggtaatcat cctgatggcc      6900
     agcgccataa actattttca taaaaaaacg aagtcgacaa aaccaacaga atccagctct      6960
     gaggacaacc agcttcaaga aatcatcact gaagctccta ttcctgaaac aaggaccttt      7020
     caaatttttc agacgctcga ggacaagcgt ttttgaagag ggagg                      7065
//
ID   YOYOLTR     repbase;    DNA;    INV; 316 BP.
XX
AC   U60529;
XX
DT   11-JAN-1999 (Rel. 4.00, Created)
DT   11-JAN-1999 (Rel. 4.00, Last updated, Version 1)
XX
DE   LTR from YOYO retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; LTR; YOYO; YOYOI; YOYOLTR; retrotransposon.
XX
OS   Ceratitis capitata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis.
XX
RN   [1]
RP   1-316
RA   Zhou Q. and Haymer S.D.;
RT   "Gypsy-like retrotransposon in the Medfly.";
RL   Unpublished.
XX
RN   [2]
RP   1-316
RA   Zhou Q. and Haymer S.D.;
RT   "YOYOLTR.";
RL   Direct Submission to Genbank (11-JUN-1996)Genetics & Molecular
RL   Biology, University of Hawaii, 1960 East West Rd, Honolulu, HI
RL   96822, USA.
XX
DR   GenBank; U60529; Positions       1     316.
XX
SQ   Sequence 316 BP; 113 A; 72 C; 51 G; 80 T; 0 other;
     agttaacgct gctaacattt aaaaactcca aacatatgtt tcccacggta cggaaacgca        60
     cccacagcaa caatacaggt aaaatgctga tgccatgtct gccgcgccgg atcaacgtat       120
     catatagccc gtacacgcgc aaccatttcg ccaacaccgt aaactgtcac ctgtgcccgc       180
     aacgtgatac agatgcttaa tgttaaggaa gtaaaaattg taattcagtc ctaagttaga       240
     attcaataaa gtaacatgta ctgaaagcac agaaaaaatt attttttttc tataacttaa       300
     cagtaattaa gttaac                                                       316
//
ID   YREP_CC     repbase;    DNA;    INV; 2819 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Ceratitis capitata Y-specific repetitive DNA sequence.
XX
KW   AT-rich DNA repeat; YREP_CC.
XX
OS   Ceratitis capitata
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis.
XX
RN   [1]
RA   Zhou Q., Untalan M.P. and Haymer S.D.;
RT   "Repetitive A-T rich DNA sequences from the Y chromosome of the
RT   Mediterranean fruit fly, Ceratitis capitata.";
RL   Genome 43(3), 434-438 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O. and Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
DR   [1] (Consensus)
XX
SQ   Sequence 2819 BP; 917 A; 506 C; 406 G; 988 T; 2 other;
     gaactcaaat acatatatta tatacttatg tatatatgta cccacttgat acatttaagt        60
     atatcgttaa atatacaaat gtgatgtgtg tgacaaatct tcggtcggct gagtgatgca       120
     aagaatcaat ttttgctgct taacagctcg tcgaatcaat gtagtgtttc atttaaagca       180
     aaatcattga aacattaaaa aaaaattaga aatttaattt tataaatttt ttataaattg       240
     aattttgtaa ctttcattac aaaaaaaaaa tcattatcac aatttcacaa atcgaaagtt       300
     tttctagtca aatttttctt ttaaagtcaa gagattaaat ttcttttaat tgtcaaatat       360
     tcaaaaatgt tatggtaaaa caattagcca tcaaaatgca tgtctaagct gataagtcaa       420
     aattttacgt acctcgacca caaccggcgt cctcacgccc aaccccaact attgctattg       480
     accgaaactc ctgatcaata ttgctaaaaa cttttccttt gcccaattta ccagataaat       540
     tcgttcttta agcatgaaaa aaaataattc agctcgaaga catgcattga aattcaaaga       600
     gttgtcggta cttattcctt aattaattcc atttctttgc cctgcacaat catcaatttc       660
     tcgccactcg atgttagctt cggttccttc aagccctctt tcagatacaa tccaaccaca       720
     agtcccttct gtgaagtgta tttggtaaaa tttttaacat ctcaacacaa caggctgcta       780
     tgcgtgcgga tattcgtaac gaaaatcact taccgtcacc cgcgaaccat cggcgtaata       840
     cttaagagat acttgtttga gattttccac ttttgaaatc tcagtagaga ttattaagcc       900
     aattcgttat tcgtagcgca gacatttttt ggatgtttga ttaatcaaat tttattatcg       960
     tcttttatgg aaatttttat ataggaaaac gttttcagct taaatatttt ctgaatgttt      1020
     tccaaagcta cggttcgttt gagtttctag aaacaaaatt tttgtatagt aggttcgtac      1080
     tgagagccaa ctatcaatct tatgggtttt tttaatttat ttggtttgga aagatcaaaa      1140
     tttagttttt tagtgtttaa aatgtgatgt gcttacttga aacgactttc tcgaggccag      1200
     acatatatga ggatacgagc ataattgaat tataaatgat tcgatacata taatacacaa      1260
     gaatagagta gttcttttta ggtccacaaa tttccaaacg aaaaaatcaa aaaaaagact      1320
     taaattttta gaatttagat aaaaatttta gtttaatgct ttgtaactaa aattgatata      1380
     cttatgtaat atgtacccac ttgcatacat ttaagntatg cgtttaaata tacaaatgtg      1440
     atgtgtgtgc acaaaatcwt gcgcgtcggc tgagtgatgc accacacaca tagaatctat      1500
     gcaccactca gacgacgcgc aagattttcg cttctgcttt gaacagacca ctcgtccagg      1560
     catcaatgtc gggcgaatcg tataactcca gtttgggtat ccctttgcga tccttcttca      1620
     ttttattatc ctgatagcgc caaattgcca aaagcacact tcggtggcct attgtttcat      1680
     ttaaagcaaa atcattgaaa catttaaaaa aaatttagaa atttaatttt ataaattttt      1740
     tataaattta attttataac tttcattaca aaaaaaatca ttatcacaat ttcacaaatc      1800
     gaaagttttt cttgtcaaat ttttctttta aaatcaaaga gattaaattt cttttaattg      1860
     tcaaaaattc aaaaatgtta tggtaaaaca attagccatc aaaatgcatg tctacccgct      1920
     gataagtcaa aattttacgc gcctcgacca caatgtaatg gaacttacca tgccctcgtc      1980
     caacatctcc aattcattga aaccggcgcc ctcattccca atcccaacca ctgctattga      2040
     ccgaaactcc tgatcaatat tgctaaaaac tttttctttg cccaatttcc agataaattc      2100
     gttctttaag catgaagaaa aataattcag ctcgaagaca tgcattgaaa ttcagagagt      2160
     tgtcggtact tactaattaa ttaattccgt tactttgccc tgcacacgat catcgaattt      2220
     ctcgccactc gatgttagct tcggctcctt ctcgccctct ttctgataca atccaatcac      2280
     aagtcctttc tgtgaagtgt atttggtaaa atttttaaca tctcaacaca acaagctgct      2340
     aagtgctgcg gatattcgta acgaatggca cttaccgtca cccacgaatc atcggcgtaa      2400
     tacctaagag agacttgttt gagatttttc acattttgaa atctcagtag agattttgta      2460
     agccaattcg ttattcgtag cgcaaacatt ttttggatgt ttgattaatc taattttatt      2520
     atcgcctttt tttatttaaa atttttatat aagaaaacgt tttcagctta aaaattttca      2580
     ataaaaaata taattgaaat ttcgaactga ctgaatgttt ttcaaagcct gttacggttc      2640
     gtttgagttt ctagaaacaa agtgttcgta ccatgaattt ttgtatcatg ggttcgtact      2700
     tgagagccaa ctatcaaatc ttattggttt ttttttaatt tatttgcttt ggaaaagtaa      2760
     aatttagttt tttggtgttt aaaatgtgat gtgcttactt gaaacgactt tctcttgaa       2819
//
ID   ZAM_I       repbase;    DNA;    INV; 7490 BP.
XX
AC   AJ000387;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   03-AUG-2018 (Rel. 23.08, Last updated, Version 2)
XX
DE   ZAM_I is an internal portion of the ZAM retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   endogenous retrovirus; gag; pol; Gypsy superfamily; env;
KW   internal portion; ZAM_LTR; ZAM_I.
XX
NM   ZAM_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7490
RA   Leblanc P., Desset S., Dastugue B. and Vaury C.;
RT   "Invertebrate retroviruses: ZAM a new candidate in
RT   D.melanogaster.";
RL   EMBO J 16(24), 7521-7531 (1997).
XX
DR   GenBank; AJ000387; Positions     473    7962.
XX
CC   ZAM_I uses PBS related to the tRNA Ser.
CC   ZAM_I encodes
CC   gag:
CC   /translation="MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLPVIRESTP
CC   LPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATALSATDILAFVKELPTFDGTPGQL
CC   DKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGRADEALNLANTKLIWDDIKSNL
CC   LRLYSSKKSEATLLGELQSLPDNLTLGQLFFGLSRIRSQLISITSNSGQSATIIEAKK
CC   TLYDEVCLNAFISRIREPLKTVIRLKDPKTIETAYELCQGERARYQNRNPYPPTQNNT
CC   ERRTNNYNNNNNNNHRDNNNRNNVTRLTPKTTQTITQTPIPNIVNQTTATELVTRLKI
CC   IKQIMGYTT"
CC   pol:
CC   /translation="NKLWATQHRRRKTHPTLPYQLKFSGTRLRNPTGYINPTTHATSL
CC   PYITLNLQQKFPLSFLIDTGSNNSFIDPESANQLECTILPTSTSITTALNSFKIEEKA
CC   IFPMPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAKVDLVNLQLVTSKSTLPIF
CC   LYTNQASKIFNIPAYSKVILPLPVKTNHGEFYCCTTQLNNELSLSEGLYKSNNNIANV
CC   EISNQSDSDKLLYLEYPLETIPYNKNDHIELFNISATPLNNDTPQAPLHILTEHLNPE
CC   EKTALTTLCKQFRDIFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKK
CC   QIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIP
CC   NINDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNA
CC   PATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPS
CC   KSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIR
CC   DFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDAS
CC   NFALGAVLSQGSLQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVK
CC   FTIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNL
CC   NYNETLTVKPCPTSEKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDN
CC   IVKILKGTLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPE
CC   QNKFIQEYHTNSNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQN
CC   IVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPIPNRNGINCIKAIKN
CC   FFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTE
CC   IYRIILDTRKKHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGRTHLFEKTIIP
CC   NNEHDYLNKLNTFQDKLYSEIKEKLSTNTQQRIEKLNTSRVEPTTVQPNSTIFRKENR
CC   RNKLTPRFSLHRTAKDKGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLAMGHT
CC   NLSSSTTSIAPTS"
CC   env:
CC   /translation="MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVI
CC   GNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQTQSKIDALTP
CC   FSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDE
CC   VQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLV
CC   SHLSDIIESTLLAKINVIPKLILDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALN
CC   YQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCP
CC   VIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGN
CC   NLPIISSNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKN
CC   ATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILTWTLRRDTH
CC   IFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL"
CC   It has been reported [1] that env is encoded by mRNA that
CC   starts at LTR and includes two exons. The first exon is 203
CC   bp-long and it starts at position 329; its coding 3'-region
CC   is 38 bp-long.
CC   Presumably, the first 5'-T nucleotide of reported ZAM_I is a
CC   3'-terminus of ZAM_LTR (Kapitonov,V.V.).
XX
FH   Key           Location/Qualifiers
FT   CDS           1317..2345
FT                 /product="ZAM_I_1p"
FT                 /note="gag."
FT                 /translation="MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLP
FT                 VIRESTPLPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATALSATDILAF
FT                 VKELPTFDGTPGQLDKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGR
FT                 ADEALNLANTKLIWDDIKSNLLRLYSSKKSEATLLGELQSLPDNLTLGQLF
FT                 FGLSRIRSQLISITSNSGQSATIIEAKKTLYDEVCLNAFISRIREPLKTVI
FT                 RLKDPKTIETAYELCQGERARYQNRNPYPPTQNNTERRTNNYNNNNNNNHR
FT                 DNNNRNNVTRLTPKTTQTITQTPIPNIVNQTTATELVTRLKIIKQIMGYTT
FT                 "
FT   CDS           2638..5973
FT                 /product="ZAM_I_2p"
FT                 /note="pol."
FT                 /translation="MPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAK
FT                 VDLVNLQLVTSKSTLPIFLYTNQASKIFNIPAYSKVILPLPVKTNHGEFYC
FT                 CTTQLNNELSLSEGLYKSNNNIANVEISNQSDSDKLLYLEYPLETIPYNKN
FT                 DHIELFNISATPLNNDTPQAPLHILTEHLNPEEKTALTTLCKQFRDIFYNP
FT                 ETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIR
FT                 SSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDI
FT                 LDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLK
FT                 NAPATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLR
FT                 AANFKLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRA
FT                 IKSFLGLLGYYRKFIRDFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTL
FT                 LSNDPILIHPDFEKPFILTTDASNFALGAVLSQGSLQNDRPVCFASRTLSD
FT                 TEVNYSTIEKEMLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNS
FT                 KIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNLNYNETLTVKPCPTS
FT                 EKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDNIVKILKG
FT                 TLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPE
FT                 QNKFIQEYHTNSNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLK
FT                 YDRQPQNIVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPI
FT                 PNRNGINCIKAIKNFFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHV
FT                 TSFQQSSSNSPVERLHSSLTEIYRIILDTRKKHKLPTDHEEIMSETVITYN
FT                 NAIHSTTKHTPFELFNGRTHLFEKTIIPNNEHDYLNKLNTFQDKLYSEIKE
FT                 KLSTNTQQRIEKLNTSRVEPTTVQPNSTIFRKENRRNKLTPRFSLHRTAKD
FT                 KGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLAMGHTNLSSSTTSI
FT                 APTS"
FT   CDS           5889..7487
FT                 /product="ZAM_I_3p"
FT                 /note="partial, see the comment."
FT                 /translation="LKPFHLHSRSCHGAYQSIFIHNFNSTNLLAKVPVGKT
FT                 LVIGNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQ
FT                 TQSKIDALTPFSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQ
FT                 STTISDNFEIQNSFNDEVQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKI
FT                 YNNEEEIKKLQYINRLNYNIDLLVSHLSDIIESTLLAKINVIPKLILDKTE
FT                 ITKIKQIFKTQNYTIKSEQHIYNLLKMNALNYQNKIIFSIKIPIFLSCNYE
FT                 MARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCPVIEEQFVCEIDSI
FT                 NNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGNNLPIIS
FT                 SNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIK
FT                 NATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILT
FT                 WTLRRDTHIFHTGPDHILPIVAPPIPPSMAFAPNWGG"
XX
SQ   Sequence 7490 BP; 2978 A; 1780 C; 1003 G; 1729 T; 0 other;
     tggcgcagcc ggaaaactgg aatggaaaat actttattaa accttctatt agttctattg        60
     taagtagttg tggaaaaaga gtgagaatga agtgcagaaa tgtctaaaag tgattacaac       120
     aaaaatccta atacaataca taaaccgcct taacaaacat acaaaacacg catataaaaa       180
     aaaaaaaaaa aaaaaaaaga aaaaaaaaaa cccaaaactt aaaaatgccg taaccgcgaa       240
     acatgatatg cgttgtactt gtgtgaaatc aatcgctgat agtcactgcc gaagtttatt       300
     aaggccaagt accatatcat tactttcatg tttacataca tatatatgcc ccacaattaa       360
     aacaacatac acacacacaa atatttcaaa tgcaaaaaaa aaaaaaagaa tgtagtgtac       420
     ctgcgtggca tcaatcgctg ataaaccact gccgaaatat taaaggcccg gtactacatc       480
     acaaaacacg tatatatgca acaaaaatat acacaacaaa accatatata caaacgtgta       540
     tgagtgacgt gtaatgtact tgtgtgaaat caatcgctga taatcactgc cgaagcttag       600
     taaggccaag taccacatca ttactaacat gtgtacatat atatatatgc aaaacaatta       660
     aaacaacata cacacacaca aatatttcaa atgcaaaaaa aaaaaaaaaa gaggaaatgt       720
     tgtgtacctg cgtggcatca atcgctgata aaccactgcc gaaatattaa aggcccggta       780
     ctacatcaca aaacacgtat atatgcaaca aaaatataca caacaaaacc atatatacaa       840
     acgtgtatga gtgacgtgta atgtacttgt gtgaaatcaa tcgctgataa tcactgccga       900
     agcttagtaa ggccaagtac cacatcatta ctaacatgtg tacatatata tatgcaaacc       960
     accaaaacaa atacatatac acatacaaac actccaaaaa aaaaaacaaa taatactata      1020
     tgaacggcga agcgtatgtt ttctaaggct ggatacaaaa ccacaaaacc aaatataaat      1080
     tgcacacctt aataaagaaa agaacaaaaa tgataataaa caaaagaaat tttttttgga      1140
     acatgcaccc atactctcac tctttcaaca caaataaagt attcaaatta tacatacata      1200
     caataatacc actatattac agaaattaac gcacaagaaa acacacacac tatccaacaa      1260
     caaacaagta attaagagtt attaagtaca ttgtaaacta catattttta tcttaaatgt      1320
     caaagaaatt aacacaaact attaaacaaa caactcgctc cgtgttagaa tcacacacat      1380
     ttcccaaaag agttacacga tcagtttcga aaacaaacac cctccccgta ataagagaaa      1440
     gcaccccctt accgcccctt caacctataa atatggattc gggcaacgcc tccgtaggta      1500
     attccgcccc cgtaacacct actgtcagtg gctttagcag tattgctacg gcacttagtg      1560
     ccaccgatat tttagccttc gttaaagaac ttccgacctt cgatggtact ccaggccaac      1620
     tcgacaaata tataactagc gttgaggaaa taatcatgct cattaggggt accgaccaaa      1680
     ctccgtacgg acttctgaca ctcagggcaa ttaggaataa aatagttgga agagcagacg      1740
     aagctctaaa cctagccaac accaaactta tatgggacga tatcaaaagt aacctactac      1800
     gtttatactc tagcaagaaa agcgaagcta ccctcttagg cgagctccaa tctctcccag      1860
     ataacctaac cctagggcaa ttgttcttcg gcttatcgag gattaggagc caacttatat      1920
     ccattacttc caatagtgga cagtcggcca caatcatcga agccaagaaa acactatatg      1980
     acgaagtctg tttaaacgcc ttcatctcaa gaattagaga accacttaaa acagtcatca      2040
     gattgaaaga ccccaagact atcgaaacag cttacgagct atgtcaagga gaaagggctc      2100
     gttaccagaa cagaaaccca tatcccccaa cacaaaacaa caccgaacga cgaactaaca      2160
     actacaataa caataacaac aacaatcaca gagacaacaa caaccgcaac aacgtaactc      2220
     gtcttacacc caaaaccact caaaccatta ctcaaacccc aattcccaat atcgtcaatc      2280
     aaacaacggc aacagaacta gtaacccgtt taaagataat aaaacaaatt atgggctaca      2340
     caacatagaa gaagaaaaac tcacccaaca ctgccttacc aacttaaatt ttcaggcacc      2400
     cgcctcagga acccaacagg atacataaat cctaccacac atgcaacatc ccttccatac      2460
     ataactctaa acctccaaca aaaattccct ttatcatttc ttatcgatac aggatccaat      2520
     aactccttca ttgacccaga atctgcaaac caactagagt gcacaattct accaacatcc      2580
     acttcaatta caacagcatt aaatagtttc aaaattgaag aaaaggcaat attcccaatg      2640
     ccacccgagt tcaaaaccga aggtcaaatt accctactta aattcaaatt tcactcttat      2700
     ttcaatggcc tcataggaat ggacctatta tcacacctag aagcaaaagt agacctagta      2760
     aacttacaac tagtaacttc aaagtctaca ctcccaatat tcttatacac taaccaggct      2820
     tcaaaaattt ttaacatccc cgcctacagt aaagttatct taccactacc agtaaagact      2880
     aatcatgggg aattctattg ttgtactaca caactaaata atgagttatc gttgtcagaa      2940
     ggactatata aatcaaacaa taatattgcc aatgtcgaaa tctctaacca atccgactca      3000
     gataaactat tatacctaga atacccccta gaaaccattc catacaataa aaacgaccat      3060
     atagagctct ttaatatatc agctacacct cttaataacg atacccctca agccccatta      3120
     catatcctca cagaacacct caatccagag gaaaaaacag ccttaacaac cctatgtaaa      3180
     caatttcgcg acatattcta caacccagaa acaccattaa cttttaccaa caaaatcaca      3240
     cactccatcc caaccataga taacactcct atccacacaa aatcctacag ataccctttt      3300
     gtccataaaa cagaagtcaa aaaacaaatc gaatccatgt tagaccaaca aattattaga      3360
     tctagccact ccccttggag cgccccggtg tgggtggtcc caaaaaaact agacgggaca      3420
     gggaacagga aatggcgact tgtaatagac taccggaaac tcaacgacaa aaccatttcg      3480
     gacagatacc ccatcccaaa cataaatgac atattagata gcataggcaa agcaaaatat      3540
     ttctcaacgc tcgacctaac tagcggtttt catcaaatcg agatgaatcc aaaagatatc      3600
     gccaaaacag cctttacagt cgaagggggt cactacgaat tcacacggat gcccttcggc      3660
     ttaaaaaacg caccggctac ctttcaacgg gttatggaca gcgttcttgg cgatctcaac      3720
     ggcaccattt gcctattcta tcttgacgat attataattt tctcgccttc cctacaaaaa      3780
     cacctgttgg acataaaaat ggtattcgaa aaactcagag cggcaaactt taaactacaa      3840
     ccttcaaaat cagaattcct aaggaaagag atagaatttc taggccacat agtcacacaa      3900
     gacggagtta aaccaaaccc gaacaaaata agtgcgatca aaaaatttcc ttgccccacc      3960
     aacagaagag ctatcaaatc ttttctcggg ttactgggtt attataggaa gtttataaga      4020
     gactttgcac gaataacgaa gcccatgact aaacaattga aagggaaaag acaagttact      4080
     acagacaaag actttgtaga cgcattcgaa cagtgcaaaa ctcttctgtc caatgaccca      4140
     atactcatac acccagactt cgaaaaacca ttcattctta ctacggatgc tagtaacttc      4200
     gcgttaggag ccgtactatc tcaaggctcc ttacaaaacg atagacctgt atgttttgcc      4260
     agcaggaccc tctccgacac cgaagtcaac tattcaacca tagaaaaaga aatgttggca      4320
     ataatatggg cagtaaaata cttcagacca tatatttatg gcgtaaaatt tactattgtt      4380
     acagatcaca agccactaat atggcttatg aatttcaaag aacccaactc aaaaataatt      4440
     cgttggagac tccaactcat ggaatacaat tttgaaataa ttcacaagaa aggttcacaa      4500
     aatgtaattg cagacgcctt aagtagagcg gacccaaatt taaactacaa cgaaacactg      4560
     actgttaagc cttgccccac atccgaaaaa cctattaacg aatttaacac gcaactcata      4620
     ctagaaatag atacaaatac gtcttaccaa actacaacac catttaaaca aaagattagg      4680
     aaaaaatatt cacagccttg cttcgatttc gataatattg ttaaaatctt gaaaggaacc      4740
     ctaaaaccta acaggatttg cgcattcttg gcggacgata ataattccgc attaatcgaa      4800
     aaagcattct caacgtattt tgcacataaa aaacacttta aaattatcag atgcaaatca      4860
     cttctccacg aaatcgtagg aaaccccgaa caaaacaaat tcattcagga atatcacact      4920
     aacagcaacc acagaggcat agacgaaaca ttccttcacc tcaaacgaga aacctacttc      4980
     cccaatatga aaaacaaaat ctctgaatta attaggaatt gcgaaacctg tctaaaactc      5040
     aaatacgaca ggcaaccaca aaatatagta tttgaaaccc cagaaacccc atcgaaaccc      5100
     ctcgacataa tacacataga catctatact attaacaata attttaacct gacaatcata      5160
     gacaaattct caaaattcgc agctgtctac cccatcccaa atagaaacgg catcaattgc      5220
     atcaaagcaa tcaaaaattt tttcagtcaa ttcggactac ccaaaaaact aatacacgac      5280
     caaggagtag aattttgcaa cgacatattt cgaaagtttt gctctcaata taatatactt      5340
     ctccatgtca catccttcca gcaatcttca agtaattctc cagtagaacg tttacactcc      5400
     tctttgacag agatttacag aataatacta gacacacgga aaaaacacaa attacctaca      5460
     gaccacgaag aaataatgtc agaaactgta ataacatata acaacgcaat ccactccacc      5520
     accaaacaca ccccttttga actttttaat ggtaggaccc atttattcga gaaaacaata      5580
     atacccaata atgagcatga ctatttaaat aaactaaata cgttccaaga caaactatac      5640
     tccgaaataa aagaaaaatt gtccacaaac acccaacaaa ggatagaaaa gctaaacaca      5700
     agcagagtag aaccaacaac agtacaacct aacagcacaa ttttcagaaa agaaaacagg      5760
     agaaataaat taacaccacg gttttcctta cacagaacag caaaagacaa aggaaaaact      5820
     ctagtaacca caagaaatca aaaaatccac aaatcaaaaa ttaggaaaat atccaaacct      5880
     ccaaatgact taagcctttc cacctgcatt ccagatcttg ccatggggca taccaatcta      5940
     tcttcatcca caacttcaat agcaccaacc tcctagcaaa agtgccggta gggaaaacac      6000
     tcgtgatagg aaactataaa aaaattagcc acataatcga tctgtccgaa tacaccaact      6060
     gtattgaaaa attataccac accatcgata ccctaagaca agatgaaaca ctcaccgatt      6120
     ctatatcaat actaaatgct aaactggccc aaactcaaag taaaatagac gcactaacac      6180
     ccttttcacg ccacaaaaga ggtcttatta acgggttagg tagtttagtc aaagtcgtca      6240
     ccggcaacat ggacgccaat gatgcaaaga atatagaaac agaaattaac cacttaaaaa      6300
     gccagtccac cactatctca gataacttcg aaatacagaa ctcgttcaat gatgaagttc      6360
     aactacggtt caaaaactta acaagacaca ttaacaatga acagaatttg attaaaaact      6420
     tcttcgaaaa cactcaaaat acaatttaca caaaaatata caacaacgaa gaagaaataa      6480
     agaaactaca atatataaat aggcttaact acaatataga tttattagtt agccacctaa      6540
     gcgacattat agaaagtaca ctgcttgcca aaattaatgt tatcccaaaa ctcatcttag      6600
     acaagacaga aataaccaaa atcaaacaaa tttttaaaac acaaaactac acaataaaat      6660
     ccgagcaaca catttataac ctcttaaaaa tgaacgcact caattaccaa aacaaaataa      6720
     tttttagtat caaaattcct atttttttaa gttgtaacta cgaaatggca agattaattc      6780
     cacttccaat aaattccaca caatttgtaa tagcacctaa gtacttaata tataataaca      6840
     aaagtaacag catgttttca actatgtata aatgtcctgt aatagaagaa caattcgtct      6900
     gcgaaatcga ctccatcaat aatcttaaaa ataatacttg cctgggacac cttatccaaa      6960
     ataagaccag ctactgcgac ataaaggaaa cgggactcac gactgatgtg ttcgaaccgg      7020
     aaaaaggctt catacttgta tttaacggga acaacctccc aatcatctcc tccaaccaga      7080
     ccataactag tatcaatgga tcagctataa taaagtataa caattgcaca ttaaaaatca      7140
     atgaaataaa ctacgacaac agggcggtat caacagaaga gcaccccgac ttcttcctac      7200
     caccaatgcg gaaactaata aaaaatgcca ctatcaacat actcaccttg gaaagacttc      7260
     acctggatac actcacaaca tccaataagc tactggtcgt cgccgcagga aactctcgac      7320
     actcgacaac cttgtatatc ctcttcaccg tatccctagt cgccgtaata ctcacctgga      7380
     cacttcgaag ggacacccac atcttccata ccgggcccga ccacattctt ccaatcgtcg      7440
     ctccaccaat tcctccgtct atggccttcg ctccaaactg gggggggagg                 7490
//
ID   ZAM_LTR     repbase;    DNA;    INV; 472 BP.
XX
AC   AJ000387;
XX
DT   16-JUL-1999 (Rel. 4.06, Created)
DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   ZAM_LTR is a long terminal repeat from the ZAM retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Gypsy superfamily; ZAM_I; ZAM_LTR; endogenous retrovirus.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-472
RA   Leblanc P., Desset S., Dastugue B. and Vaury C.;
RT   "Invertebrate retroviruses: ZAM a new candidate in
RT   D.melanogaster.";
RL   EMBO J 16(24), 7521-7531 (1997).
XX
DR   GenBank; AJ000387; Positions       1     472.
XX
SQ   Sequence 472 BP; 154 A; 138 C; 74 G; 106 T; 0 other;
     agttaccgac ccatcggtac catacaccac ccctccctct aagccaccac gcctacacaa        60
     gtagaagaca tcgaaccggg aagctttgcg atacaaagtt gcagcataaa catcaacaac       120
     gggtcagacg ccgacatccg cccaaaatgc tgacaccaca tccttttcgc tcagacagaa       180
     caacgcatac aattccatat acatacgtat aaacatactc atactttctg ctgtgtcaga       240
     tactttattt ctaagaactt taacattgta atacatacac acatattcac tgttagccca       300
     tttaagacga agaataaaga cgaccacagt cgagtgcaag cagcaaacac ttgtagacgt       360
     acataatctc cgatcaaaat tctcccaaga cgaccgtggc tacgttctgg acccgcataa       420
     ctcctctatc tttctgagtg ataatacctc cgcaagactc cccggaggta ac               472
//
ID   Zator-1_AA  repbase;    DNA;    INV; 3722 BP.
XX
AC   .
XX
DT   29-JAN-2009 (Rel. 14.02, Created)
DT   15-JAN-2019 (Rel. 24.01, Last updated, Version 2)
XX
DE   Zator DNA transposons from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-1_AA.
XX
NM   Zator-1_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3722
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Mol Biol Evol 26(5), 983-993 (2009).
XX
CC   One mariner insertion is removed.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1053..2462,2491..3456)
FT                 /product="Zator-1_AA_1p"
FT                 /translation="MDRAALYKKLYSSYEKANHLKPKRQIQQEVNEIWCKA
FT                 KSDADTFERNINEAIDAAALKLSRNKAGLAKFWTLTQKAAPQELSQCSSQS
FT                 LSKPEVCIENVKPTLPSPEPSTSSGLAPKRPAPAQERMRTQLADINQELLL
FT                 LVGRKERDLLTEDDRQRMHRLRENKKVLETDLKKKIGDQIRSQKRRDDLKQ
FT                 SFKELSEKIPEAKSILNLQATAGRPRVEDKQPEVLKAIVEIALYGSAAHDR
FT                 RQDESYRSVRTLSDLTEAVNRHGFEISRSAMYLRLIPKRANSSEGLRHVKT
FT                 VPVKLIKAQNDKHTQHQDGRFCTAAIHMLEKLAAMLGPREVFFVSQDDKAR
FT                 VPLGLTAATKQSPMVMHVDYKVSLPDHDFVVAKEHKLIPSVYAAVKIQPDA
FT                 MGKAEAVGYSGPTYIAIRSAKHCSSTANSHGSDYTRLLDLHEFEDFAKNDG
FT                 EVKPVHVIVSDGGPDENPRYQKVVACDLHFFQVIKVAIHHFIQHNLDAIFL
FT                 ATNAPGRSAYNRVERRMAPLSKQLAGLILEHEFYGSHLDSQMRTVDLELEK
FT                 RNFSHAGQTLASLWSELQLDDYPVYAEYVESERSELSDLIDKDAGWFANHV
FT                 RSSQYFLQVVKCHDKNCCKPFRSSLLTVLQNRFIPPPIPLYQTDLGLKAPN
FT                 PANIGSKNFASLFVINSLDLSKILPNAIQNENIAFDTYCPSVFKRIKERTC
FT                 KTCKLYFASNVIQKAHCQTHKGTSVSKKIRPKRVVCRRAEEVLVVTVDDEK
FT                 EWIEIDDVEDSPIPNEDLSEEACPILALDTRMEIIWTTETD"
XX
SQ   Sequence 3722 BP; 1178 A; 718 C; 820 G; 1006 T; 0 other;
     gggaccgtcc ataaatgacg tagcttttat ggggggaggg gggggtttgg caatttgtga        60
     cgatgtgtga cgataggggg gtaggggtcc acggtaagct acgtagcttt cagagaaaca       120
     atgaaaaata tgaatgcaac acatgcagat gcgaaagcaa tgcacatgca gataataata       180
     tgcatctcaa cagtcaccta actccgccat gtatcgtgag ccttttcaat ttttaactac       240
     atcatgcgat tactcgaatg ttcatatatt ggtttgccaa gttcttgcta acgagaacat       300
     tttttaaagt ccaagcagaa gatattgaag ctggtcaaaa tagttaatca ttatatttac       360
     cgatcgctcg catgtttggc aatacgatct acaatatact caacttttta atggacgtat       420
     acgacgatat atagattcga aaaaatatga gttactaaga cacacaacaa ataatacctg       480
     attattaata caaaatatcc ttctcattta ttactgttcc atatttacga atatttttca       540
     agccaaaata tgtttctaca atattcacac ttacaaaata ttgaatgaaa ttttattcaa       600
     tagagtgaaa ttatcgtttc ttgacaaaaa aaaaaatacg acaaaaataa ttgagattag       660
     gagtatttca tatgttgtgc taagatcgat gtcatcagca gcacggtgta ctatattgag       720
     aaggtgatat attccgaaaa ctgacagcta cttgacgacg tcattcctat ccacctcgaa       780
     caaatttgcg aaaaatatga tctattggtc cggaaggtat atggtacgat aggagtgacg       840
     tcacatgttt acaatcaatc ttgatattta catcagtaaa gagactgcct tgttaatttt       900
     tatgccgtga tcagcagcat ttgttttggt tgagtaagcg tagcctgtgt ttgtgttttg       960
     tcgtaaaaat catccgcaaa aagtcgagta agttaatcat tggcaatctc taacaacttt      1020
     ttatctcaaa atcatatttt tactacagaa aaatggatcg tgctgcgttg tacaaaaaat      1080
     tgtattcatc gtatgagaaa gcgaaccatt taaaaccgaa gcgtcaaatt cagcaggagg      1140
     tgaatgagat atggtgcaaa gctaagtcag atgcggatac gtttgagagg aatatcaatg      1200
     aagctattga tgctgcagcc ctcaagcttt ccaggaataa agcaggattg gcaaaattct      1260
     ggacactgac gcaaaaggct gcaccacagg agctaagtca atgttcgtcc caaagcctat      1320
     cgaagcctga agtgtgcatt gagaatgtaa aaccaacatt accatcgcct gaaccatcta      1380
     catcatccgg tcttgcccct aaacgaccag cacctgcaca ggaacggatg cgtactcagc      1440
     tggctgatat caaccaagag cttttgcttc ttgttggaag gaaagaacga gatttgctga      1500
     cggaagacga tcgacaacgg atgcaccgac tgagagaaaa caaaaaagtt ctggagactg      1560
     atctcaaaaa gaaaattggc gatcaaatcc gatcacaaaa gcgtcgcgac gatttgaagc      1620
     agtccttcaa agaactgagc gagaaaatcc cggaagcgaa atcgatcctc aacctacagg      1680
     caactgctgg acggccacgc gtggaggaca agcaaccgga ggtgttgaaa gccatcgtag      1740
     aaattgctct ttatggctcg gctgcccatg atcgtcgtca ggacgaaagt tatagaagtg      1800
     tgcgaacgtt gagtgattta accgaagctg tcaatcgtca tggatttgag atcagcagaa      1860
     gcgcaatgta ccttcgtctc attcccaaac gtgccaattc ttctgaggga ttgcgacatg      1920
     tgaaaaccgt accggtgaag ctaataaaag cgcaaaacga caaacatacg caacatcaag      1980
     acggacggtt ttgcactgcc gcaatccata tgctggagaa attagctgca atgttgggcc      2040
     cacgagaagt gtttttcgtc agccaagacg acaaggctcg tgttccacta ggcttgactg      2100
     ctgccactaa gcagtcaccg atggtcatgc atgtggatta taaagtgtct ttaccggatc      2160
     atgattttgt cgtggctaag gagcataagt taattccgtc agtttatgct gccgtaaaaa      2220
     tccaaccaga tgccatggga aaggcggaag cagttggtta tagtggtcca acctacattg      2280
     ctataaggtc agccaagcac tgttcgtcta cagcaaattc tcatggttct gactatacgc      2340
     ggctcctcga tctacatgag ttcgaagatt ttgcgaagaa tgatggagag gttaaaccag      2400
     ttcatgttat cgtatctgat gggggtccag atgaaaatcc tcgctatcag aaggttgttg      2460
     cttagaattg tgatttgaaa ttgttaatga tgcgatttac atttttttca ggtaatcaaa      2520
     gtagctattc atcatttcat acagcacaat ctggatgcaa ttttccttgc tactaatgct      2580
     ccaggaagaa gtgcatacaa tagagttgaa cgacgtatgg ctcctttaag taagcagctc      2640
     gctggtctca ttttggaaca tgaattctat gggtctcatt tggacagcca gatgcgaact      2700
     gtagatcttg agcttgagaa aaggaacttc agtcatgccg gacaaacact cgcctcattg      2760
     tggagcgagt tacaattgga tgactaccct gtgtacgctg agtatgtgga atcagaacga      2820
     tcggaattat cagatctgat tgataaggat gccggatggt ttgctaacca tgtaagaagt      2880
     agccaatact tcctacaagt cgttaaatgt cacgacaaga actgttgcaa accctttcgc      2940
     agtagccttc taaccgttct tcaaaatcgc ttcattccgc caccgatccc attatatcaa      3000
     acggatctcg gactaaaagc tccaaatcca gcgaatattg gcagcaaaaa tttcgcgtca      3060
     ttgtttgtta tcaattcact ggatctttct aagattttgc cgaatgcaat tcagaatgaa      3120
     aatattgcct tcgatactta ctgtccatca gtattcaaac gcatcaagga gcgcacctgc      3180
     aagacatgca aattgtactt tgcgtcaaac gtcatacaaa aagcacattg ccaaacgcac      3240
     aaaggaacct cagtttcaaa gaagatccgc cccaagagag ttgtttgcag aagagctgag      3300
     gaagtactcg ttgtcacggt ggatgatgaa aaagagtgga tcgagattga cgatgttgaa      3360
     gactcgccga taccgaacga agacttgagt gaagaagcct gtccgatact tgcactggat      3420
     acacgaatgg aaataatctg gactaccgaa acagattgaa actgaacgct taaaagaaat      3480
     gttaatattt cgttataata tttaaatttc tctactttgt ttttaaataa atgatgaact      3540
     cgaaataatt ttatatgcaa aaaaaagttg aatttttaaa ggggtttgga gggggggggg      3600
     gtcagaagaa tgctacgtcc ttttcatagg gggggttgat aagtttgtga cgaattgcta      3660
     cgagggggga ggggggtgtt aaaaatagtc aaaataaagc tacgtcattt atggacggtc      3720
     cc                                                                     3722
//
ID   Zator-1_CP  repbase;    DNA;    INV; 5670 BP.
XX
AC   AAWU01037170.1;
XX
DT   29-JAN-2009 (Rel. 14.02, Created)
DT   26-JUL-2009 (Rel. 14.08, Last updated, Version 2)
XX
DE   Zator DNA transposons from Culex pipiens.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-1_CP.
XX
NM   Zator-1_CP.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-5670
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Mol Biol Evol 26(5), 983-993 (2009).
XX
DR   EMBL/GenBank/DDBJ; AAWU01037170.1; Positions    5724      55.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(442..930,906..1205,1108..1719,2269..2583,
FT                 2544..2837,2925..3719,3755..4333)
FT                 /product="Zator-1_CP_1p"
FT                 /translation="MDHNEMFGDLFKAFVKAYPEKKKSACQAEAILFWNQL
FT                 KTSEPKDKLPELVRSKIQQLEALALGRQGALMKFWGKAASAASPTPAVSQS
FT                 RASPSEHGASGSGQSSRKGEAKIAQPSSASCLKRPAPVQQKISEELNEVTA
FT                 QVLRMKERESAGLMTEGLKGNSSNRPEGEFKQLKLLTGQRNKLEKIVESKI
FT                 SQQERQKKRRVVEKSAKERLLEEIPEAGKLKKLGFYTSKIKYVYILSQVPV
FT                 SKIKHRPSTPGRAANRFIEGHLNMFIFSAKFLSVRSNIGRPRLEEQQTDLL
FT                 KAICDIAIYGSAAQDKRQLEAIRSIHTLDELKDALFHQGFKLSRSATYLRL
FT                 LPRRSNTVEGERHVNPVPVKLQKATNTKHHDHSDGRFCTSTIWSLEELSSL
FT                 LGPEEVAFLSQDDKARVVIGLTAANKQSPFLMHIEYRVKLPDHNWVVAQRH
FT                 KLIPSVTAGIIMSMSMSMVDCQYDQKVKHYRCLPSCDALRRTYQFLNRVLC
FT                 LTSYRRRAIRATMLWDGLSKRNEIIIYNSTMRISISMHFRSTSRGFARVDS
FT                 LSDRSNELHTTDGPTSLATPRPLFQWPNFSGHTATPFSMISRIFDHFPAGS
FT                 RASIHSPIDPTNTTRLMAQLLWPHRDPFFNDFENFLPLSRGFARVDSLSDR
FT                 SNEHHTTDGPTSLATPRPLFQWPNFSGHTATPFSMISRIFYHFPVGSRASI
FT                 HSPIDPTNTTRLSVTAGIIIKKNGLGKPEAVGYSGPTYVGIRSGKHSSSTA
FT                 YSHALDFKRLTELEEFAPILRHDGIIKPVVVIVVDGGPDENPRYRKVIQVA
FT                 IHHFLEHNLDAIFIATNAPGRSAFNRVERRMSPLNRELAGLILPHDNYGSH
FT                 LDSQMRTTDEHLERQNFKFAGKTLAEVWGGLIIDGYPTVAEFIEPEASEVD
FT                 PESLECRDQCWFSNHVRTSQYMLQIVKCDNRLKHFFAFYFRSCCSPLRSSL
FT                 STVLPGRFLPPPIPFIHSSDVLKAAGKDDHQHFPSLFVAISLDVSKILPKS
FT                 YLGFKKIPYDLFCPSQTNLVNDRICTTCGLYHASLVMLKEHKKEHKVTAAT
FT                 KKIRSKHVVTRRRNELLVTTADGGDLDWLDSDTVDLTGIPMDWAEGVENLN
FT                 DSHPIIDIEKHLLNPWGED*"
XX
SQ   Sequence 5670 BP; 1577 A; 1253 C; 1301 G; 1539 T; 0 other;
     ggcgtcatcc ataaagtacg tcacgctctt agggggggag ggggtttggc gaagcgtaac        60
     aaagtgtgac aaggggggga ggggggttca gatcagcgtg acgtaccgtt agatttattt       120
     ttcttttaat ttgtcctaaa caaccaaccg caatgccaaa aagcttgaaa tagaaagcaa       180
     ttctaaaacg catccgtagc caactcaaaa ataggtttgt gcaaacttga ttctaagtac       240
     acggtttaag cgtgtgaaat caatatacac gattatagaa tttttgaatt tgcatgagtt       300
     tcgtcagatt attagtatgc ttcattgaga gtgtactcag ttgacagcta caattttaaa       360
     ttttcaactg ttcttttgac gtgtgcggcg caaattgagc ggaagttttt ttttaaacca       420
     agtgcaaaga acgacttaaa aatggaccac aacgaaatgt ttggtgacct tttcaaggct       480
     ttcgttaaag cgtatcctga gaagaagaaa tctgcgtgcc aagcagaggc gatcctcttt       540
     tggaaccagc tcaaaacatc tgaaccgaag gacaaactgc cggaactcgt aaggtcaaaa       600
     attcagcagc tcgaagcgct ggcgcttgga cggcagggag ctttaatgaa gttctggggg       660
     aaggctgcaa gcgctgctag cccaactcct gcggtatcgc agtcgagggc gtctccatcg       720
     gaacatggag catcggggtc cggacagtcg agccgaaaag gcgaagcaaa aatagcgcag       780
     ccaagttccg cgagctgttt gaagcgacct gcgccagtcc agcagaaaat ctcggaagag       840
     ctgaacgagg ttacagccca agtgctgcgg atgaaagagc gcgaatctgc gggattgatg       900
     actgaaggcc tgaaggggaa ttcaagcaat tgaaattatt gactggccaa agaaataagt       960
     tggagaaaat agttgaaagc aaaatcagcc agcaggagag gcagaaaaag cgacgagtcg      1020
     ttgaaaagag cgccaaggaa aggcttcttg aagagattcc tgaagcaggt aagttaaaaa      1080
     agctgggttt ttacacctct aaaataaaat atgtttatat tctcagccaa gttcctgtca      1140
     gtaagatcaa acatcggccg tccacgcctg gaagagcagc aaacagattt attgaaggcc      1200
     atctgtgata tcgcgatcta cggttcggcg gctcaggaca agcgacagtt agaagcgatt      1260
     cgaagtattc atacattgga cgaactcaaa gatgcgctgt tccaccaagg tttcaagctg      1320
     agtagatctg caacctactt acgattgctg ccacgtagat cgaacactgt ggaaggggaa      1380
     cgtcacgtca atccagttcc ggtcaaactg caaaaagcca ctaacaccaa gcaccatgat      1440
     cattcagatg gtcgattttg cacgtctaca atttggtctc tggaagagct ctcttcactg      1500
     ctaggaccgg aagaggttgc atttctaagc caggacgaca aagcgcgagt tgtaatcggt      1560
     ttaacagccg caaacaaaca gtccccattc ttgatgcaca tcgaataccg agttaaactt      1620
     ccagaccaca actgggtcgt cgcacagcga cacaagctta tcccatcagt caccgctgga      1680
     ataattatga gcatgagcat gagcatggtt gactgccaat gagctgctac tccgttattg      1740
     acggatcagc tgaagttaca caatgaacca acagatgaat agtgggagct aatcatcctc      1800
     actgtataac ccctgaagat ctctgcttta agtcaatacc ggcgcccccc caaggagatg      1860
     cagttcaaca aaggtaggaa tgttagtccg atagttgaag ttgcagactc atcagacaca      1920
     gagtttgtca ctctatacct gttgacaccg catgagaccg ttgaatccac agcatctcct      1980
     tcaagcatca cgggaagtgg gggaattgtg ttagtagggg aaggaaaggg aaggtcagga      2040
     ttcatcttgg tagatgatat gaccagaatg tgaaacaatc gttgccttcc gagctacgac      2100
     gctatgagaa ggtcttatca atcgcgtatt ttttacttct taccgccggc gtgccatccg      2160
     agcaacgatg ctttgggaag gactttcaaa acgaaatgaa ttttgaatta acgtattatt      2220
     cggtgatgta caatttagga tagatcagga tccatttttg taagatgata tgaccaaaaa      2280
     gtgaaacatt atcgctgcct tccgagttgc gacgctttga gaaggactta tcaattcctt      2340
     aatcgtgtgt tatgtttaac ttcttaccgc cgacgtgcca tccgagcaac gatgctatgg      2400
     gatgggcttt caaaacgaaa tgaaattata atatataatt caacgatgcg aatctctatt      2460
     tcaatgcatt tccgatctac ttctcgcggg ttcgcgcgcg tcgattcact ctccgatcga      2520
     tccaacgaac ttcacacgac tgatggccca acttctctgg ccacaccgcg accccttttt      2580
     caatgatttc gagaattttc gaccactttc ccgcgggttc gcgcgcgtcg attcactctc      2640
     cgatcgatcc aacgaacacc acacgactga tggcccaact tctctggcca caccgcgacc      2700
     cctttttcaa tgatttcgag aattttctac cactttcccg cgggttcgcg cgcgtcgatt      2760
     cactctccga tcgatccaac gaacaccaca cgactgatgg cccaacttct ctggccacac      2820
     cgcgacccct ttttcaatga tttcgagaac tttctactac tttcccgcgg gttcgcgcgc      2880
     gtcgattcac tctccgatcg atccaacgaa caccacacga ctgatggccc aacttctctg      2940
     gccacaccgc gacccctttt tcaatgattt cgagaatttt ctaccacttt cccgtgggtt      3000
     cgcgcgcgtc gattcactct ccgatcgatc caacgaacac cacacgactc tcagtcaccg      3060
     ctggaataat tatcaagaaa aatggattgg gaaagccgga ggctgttggg tattccggtc      3120
     cgacatacgt tggaatccgc tccggaaagc actcgtcgtc aaccgcgtat tctcatgcac      3180
     tggatttcaa acgattgacc gagctggaag aatttgcgcc gatcttgcgt catgatggga      3240
     tcatcaaacc cgtggttgta attgtggtgg atggtgggcc tgacgaaaac ccgcgctatc      3300
     gcaaggttat tcaggtcgcc atccaccact ttcttgaaca taaccttgat gccattttca      3360
     tcgcgactaa cgcgccggga agaagtgcct tcaaccgggt cgaaagacgg atgtccccgt      3420
     taaaccgaga gctagcaggt ctaatcctcc ctcacgataa ttatggatca catctagact      3480
     cacaaatgcg gaccacagat gaacatttgg agcggcagaa tttcaagttc gctggaaaaa      3540
     cgcttgcgga ggtttggggt gggctgatca ttgatggata tccgacggtt gctgaattta      3600
     ttgagccaga agcgtcagaa gttgaccccg aatcgttgga gtgtcgtgac caatgctggt      3660
     tttcgaacca cgttcgaacc agccaataca tgctccagat tgtgaagtgt gataataggt      3720
     aaatttagca tatattaatt taaaacaata ataattaaaa catttttttg cattttattt      3780
     cagatcctgc tgttcgccac tgcgaagctc tttgtcgacg gtacttcctg gacggtttct      3840
     tcctccacca attccgttta tccactcgtc cgatgtacta aaagctgcag gaaaggatga      3900
     ccaccaacac tttccatctt tgtttgtcgc catttcactc gacgtttcga agatcctacc      3960
     aaaatcttat cttgggttca agaaaatccc gtatgatctg ttttgccctt ctcagaccaa      4020
     tctggtcaac gatcggatct gtacgacctg tggactgtac catgcgtctc tagttatgct      4080
     taaggagcat aaaaaagagc acaaagttac ggcagcgacg aagaagattc gttccaagca      4140
     tgtcgtgacc agacgacgaa atgagctatt agtgacgaca gcggacggcg gtgatcttga      4200
     ctggctggat agtgatacag ttgatctcac tggtatcccc atggattggg cagaaggtgt      4260
     tgagaactta aacgattcac atcccataat tgatatcgaa aaacatctgc taaatccttg      4320
     gggtgaagat tagcattgct agattgattt gcgttgactg ctgaaacgat gatattatat      4380
     tgttatattg tggatttagc tcgtagctgg attttctggc atcttctcac ggtcattgga      4440
     aacgctcgtg gatacaccta ggggttccca gttggagtga aaaaattcaa tttatagaaa      4500
     aattatggat taacattttg cttttttatc acatctccga catcaggaat aattgtttga      4560
     acatgctcgc aattctttta ttcggtcgga aaaatattat ttttcttgaa aaaactttca      4620
     tttttaatca catgatcacc cctaattctg gctcgatgcc gccatcatgc gaccgcgtgc      4680
     tccgtttgtt tgtcaacaaa tttgcagctg gatggtgaga cgaagtgagg ggggaagaga      4740
     ttttgacatt tttatgcccg catctggccc gccgcctatt tcgtcggtac cgtcagtggg      4800
     ggtgacattg ggtctggggg gtgagattgg gtcaaagtga ttttttacgg attttaccat      4860
     ttctcagatt cttttcaatg aaactgaact ctgttaaaag ggttgtgtag gggacatctt      4920
     aagatgactt cgctgaaaaa aattcgttcc tagaacatat cctgttattt tggcagatgt      4980
     ctaaagttgg ggtacgtttt tggccaaaaa tgacctctcg aaaaatcatt tttctaatat      5040
     ttttgttaga attgctcgaa aactacccaa gtgtttgaaa atctccactt caaacattgt      5100
     agcgtgtcaa tacgattccc tcgaacaaga aacgctgttg gatgacttgt ttttaccata      5160
     tctttgtatt tcagcatcat tttagtttca tttgacccaa tgtcaccccc tctaaggggt      5220
     gagattgggt caattttcaa acaattggca tttaaggtag tgttcatcaa aatcgaccat      5280
     attttgggaa aatgttagta aactatcgaa gaacaaatct acgttaaaag attttcgatg      5340
     ttatttaaat tgtttttgtt attaagaaat ttcgagaggt gtttcgtttt ttgacccata      5400
     gtcaccccca ctgacggtac ctgagcagcc ggtcgtttcc agtgaccgag tccagctagg      5460
     tactgatcgt acaataacaa tgaaataaaa acaacttgaa ataagataac ttcgtttttt      5520
     taaataagat ttttctattg gctgggggag gcgggggggt catgttatgt gacgtacttt      5580
     tatagggggg ttaatatgaa gcgtgacaaa gtgtgacatg gggggttaaa aatcgcccga      5640
     tttagcgtga catactttat ggatgacgcc                                       5670
//
ID   Zator-1_DF  repbase;    DNA;    INV; 509 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   04-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Zator-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-1_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-509
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1187-1187 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 509 BP; 168 A; 65 C; 120 G; 156 T; 0 other;
     ggggctgtcc atatattacg taatcactta ggggggggag ggggtcaagg aaatgattat        60
     gtttgattac atggggaggg aggggtcttg gatattgatt acgtaatcat tttataaaaa       120
     ttttgttgtt aaaagtatat attaaaaaat tggtttcgcg ccgcttactc cgtcaataag       180
     taccgaatgc aactctataa ttaagtcgat atacatattc tattatttgt atagactatg       240
     tagacgacga agacaaagat aatacctgcg gagataaaca gattttgaca agccaacttc       300
     cagtaataaa taatattaaa gattggctgg aatctccttt tgaaaatata gaataaaaga       360
     acaaatttgc atatcttttt tttttgtgat aacgtaatca ttgtaggggg ggggagggtg       420
     ttcattaaat gattactttt gattaccagg ggggggggag ggggtcaaaa atcgcagaaa       480
     acgtgattac gtaatatatg gacagcccc                                         509
//
ID   Zator-2_AA  repbase;    DNA;    INV; 4043 BP.
XX
AC   .
XX
DT   29-JAN-2009 (Rel. 14.02, Created)
DT   26-JUL-2009 (Rel. 14.08, Last updated, Version 2)
XX
DE   Zator DNA transposons from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-2_AA.
XX
NM   Zator-2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-4043
RA   Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.;
RT   "New superfamilies of eukaryotic DNA transposons and their
RT   internal divisions.";
RL   Mol Biol Evol 26(5), 983-993 (2009).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(350..1672,1690..2208,2304..3257,3297..3893)
FT                 /product="Zator-2_AA_1p"
FT                 /translation="MKLNLFYREFGVEFPTTRMEQVPIAVRIEKEGKQVLQ
FT                 AIVSVPTTSSFQSIIARVLGRIENGHEKIDKIYTGSLSMEQKDLFEVDQTS
FT                 VLQDASRVIGTCTKVLCRLKSTLEPSKQPKNAFHQMMQSASAAVYPEKKVE
FT                 KDGRDQLYNCVVQYLKTMNAGFGRFQKDDMQAFMSVIVSALWYLDGQSEKI
FT                 ASAPGVRSVPKRFCFTPENGETFRVLTHGNMRKKPLPRMTRDEMIVVFDRL
FT                 DALCATGITKSKSWSEVRSDVEGLRETFAGYINYLNQVENRAENETIDDSK
FT                 LHDNRSLKTVPGSSSQSALAKLMYKPLHQFLIQEEPCTPVNLILYAPVERK
FT                 ARYKYIQGLCFEFDVNVYRSFKPNATFVWRLPQERSESQIANTIHRLESGL
FT                 ADRIRVDKAKRAEEAFGGLASWTDKDLNDFLTICKGNNFLIVIHIIHFLDD
FT                 KDTDDANSEDLSDTVKGVQLLLNDGHEVEDVILLRDQEQEARDGKFNNFWK
FT                 AVEAVISENDLAVAQERRHGTTSWISPLCVSLRDLMEKSEEKMNQLFPESL
FT                 MNNVPSMEFFRLQFSPRNSRTNSAKRYYSRFDIKYGLQIRTLRKSHPDQHY
FT                 GAKQFQYMKIMAGTFWNIFYAVHKKVNSMFTGLFCDTSIVFFLDDKAAIPV
FT                 GFEGAPVSATRRQRSVLKAGLDNRGLNALDHDNIPQHLTPSITIKLIPPSE
FT                 LSNAWYAGQPYIIIKDAIFQHSTAFRHASELVARYSKNDLERPMLFIGSDG
FT                 GPDHNLTSIMVMLSYIAIFLHLNLDFLCAVRTPPNFSFINPAERFMATANL
FT                 ALIGVSLSRNHLGENEKFVKNLLSKKQWREAQEKHPQNDYPRLALEGTKDA
FT                 RELLQSRFESLCYKGEKVKVFPAASEESIQAIKSEITNQWPALNLNKISKA
FT                 QAMSDSSFKQFFDKHVKATAYTFQVRTILFLQVKKCQDESCAYHKSKRLDL
FT                 NVNWLPTPELKGDKYKSFDEVYGSEPNDAYQPSKTKTSRGDSLPQPSFPLA
FT                 STRARLIVNCTECKFPRVLYSRYSLNEKELFDTKRFFDENYYICGSQLETF
FT                 PDIFQHPKISCFDPIHLHYYQCPSLKGYKNMCAKCLSSNANITYNKINLCE
FT                 KCHSPKSKTVVVKQPKGRSVKK*"
XX
SQ   Sequence 4043 BP; 1275 A; 815 C; 794 G; 1159 T; 0 other;
     ggccggaaca aatctgaaaa ttttcttttg tcaccccccc cttcaaaacc atcgaaaatt        60
     tgaaagggga aaataaaaaa aagttaactt tttctcagtg catttttccg tgttttggat       120
     tatttcatat ttttaacgtt gggcccgcag taatgttttg tcctgaggag agttttgtca       180
     ttgttgatac aagctacttg ctagaaaccg cctcaacgtc aaatgtcaaa atatttctaa       240
     gctgtcttgt ttgtatacct cacttaaaat tttataatct cgtggcaaca gtcttatatt       300
     cggtaaatat gcatacatat tttgagttta tgttctgaat catcaacata tgaaattaaa       360
     tttattttac agagaattcg gagtagaatt ccccaccacc aggatggagc aagttcccat       420
     tgcggtacgg atagagaagg aaggtaaaca ggtgttgcaa gccatagtct ctgttccgac       480
     gacatcaagc ttccagtcga ttatcgctcg agtgcttgga aggatagaaa acgggcatga       540
     aaagattgat aaaatctaca ccgggagtct atcaatggag cagaaggatc tgtttgaagt       600
     cgatcaaact tctgttcttc aggacgcttc aagagtgatt ggaacgtgca ctaaagtttt       660
     gtgtagactg aaatcaactc tcgagccttc gaaacaacca aaaaatgcat ttcatcaaat       720
     gatgcaaagt gcttcggctg ctgtatatcc tgagaagaag gtggaaaagg acggtcgaga       780
     tcaactctac aactgcgttg tgcaatattt aaagacgatg aatgcaggat tcggacgatt       840
     tcagaaagat gacatgcagg ctttcatgag tgtgattgtt tcggctctat ggtatctgga       900
     tggccaatca gaaaaaatag cttcagcgcc aggagttcgt tcagtaccaa aacggttctg       960
     tttcacacct gaaaatggcg aaacattccg tgtgcttaca catggcaaca tgagaaagaa      1020
     acctctccca cgaatgacaa gagatgaaat gattgttgta tttgaccgct tagacgctct      1080
     atgcgctaca ggtattacaa aatcaaaatc gtggtcagaa gttcgatcgg atgtggaagg      1140
     attacgtgaa accttcgcag gttatatcaa ttacctgaat caagtggaga atcgagcaga      1200
     aaatgaaacc attgatgatt ctaaactgca tgacaacaga tctctgaaaa ctgtacctgg      1260
     tagcagttcc cagtctgcat tagcaaaact tatgtataaa ccgcttcatc agtttctgat      1320
     ccaagaagaa ccgtgcactc ccgtgaattt gatcctgtat gctccggttg aaagaaaagc      1380
     gagatacaaa tatattcaag gactatgttt tgaattcgat gtaaacgtct atcgttcatt      1440
     caaaccgaat gccacttttg tgtggaggct gccccaagag cgatcagaat ctcagatagc      1500
     aaacacaatc catcgtttag aatcaggttt ggctgaccgt atcagagttg acaaagcaaa      1560
     acgggcggaa gaagcttttg gaggcctagc ttcgtggacc gacaaagatt taaatgattt      1620
     tttgactatt tgtaaaggta ataactttct aatagtgatc catatcatcc actaacaact      1680
     tttgtttgat ttttagatga taaagacacc gatgatgcta attctgaaga cctttcggac      1740
     accgtaaaag gagttcagct gcttttgaat gacggccacg aagttgaaga cgttatcctt      1800
     cttcgagatc aagaacaaga agctcgtgat ggtaaattca acaacttttg gaaagctgtt      1860
     gaagctgtga tatccgagaa cgatttagct gttgctcagg aaaggcgaca tgggaccact      1920
     agttggatat ctcctctttg tgtctcccta cgcgatctga tggaaaaaag tgaagagaaa      1980
     atgaatcaac tttttccaga atcgttgatg aacaatgtcc cctcaatgga attcttccgt      2040
     cttcaattct ctcccagaaa ctcacgtact aactcggcca aacgatacta cagcagattt      2100
     gacataaaat atggactaca aatacgtact ttgcgaaaat cacatccgga tcagcactat      2160
     ggagcaaagc agttccaata catgaaaatt atggcaggta cgttttggta aaccagtact      2220
     aaaataggat aaattcaaac aatttgcata ttccaattgc cctggaaagt tcattgaaat      2280
     tactgtttta agtccagccc taaaatattt tttatgcagt tcacaaaaaa gttaattcca      2340
     tgtttacagg tctattctgt gatacaagta ttgtattctt tttggacgat aaagcagcga      2400
     ttccagtggg atttgagggt gctccagtca gtgctactcg gaggcagcga tctgttttga      2460
     aagcaggttt ggataacaga ggactgaacg ctttggacca tgacaatatt ccgcagcatt      2520
     tgaccccttc cataacaatc aagctcattc ctccttctga actttccaat gcatggtatg      2580
     ctggacagcc ttacatcatt atcaaagatg ctatatttca gcactcaact gctttccgac      2640
     atgcttcaga gcttgttgct cgctactcga aaaatgatct tgaaagacca atgctgttca      2700
     ttggatcaga tgggggacct gatcataatt tgacctcgat catggtaatg cttagttaca      2760
     ttgccatatt tcttcacttg aatctcgatt ttctgtgcgc agtgcgcacg ccaccaaact      2820
     tttcattcat caacccagca gaacgtttca tggccaccgc gaatctagct ttgatcggag      2880
     tttctttgtc gaggaaccat ctcggtgaaa acgagaagtt tgtcaaaaac ctactgtcaa      2940
     aaaagcaatg gcgtgaagct caagagaaac acccccaaaa cgactatcct cgtttagctc      3000
     tagaaggtac aaaagatgca cgagagttgc ttcagtcaag attcgaatca ttatgctaca      3060
     aaggggaaaa ggtgaaagta tttccagctg caagcgaaga gagcatccag gctatcaaat      3120
     ctgaaataac taaccaatgg cctgcgctaa atttgaacaa aatctccaag gctcaagcta      3180
     tgagcgattc atcgtttaag cagtttttcg ataaacatgt caaagcgact gcttatacct      3240
     ttcaggtaag aacaatatag caatcctaag atttgttttt aattttttat tcctaactct      3300
     tcttacaggt aaagaaatgt caagatgaga gttgtgctta ccacaaatca aagcggttgg      3360
     acctcaacgt gaattggcta ccaacacctg aactcaaagg cgacaaatac aagtcatttg      3420
     atgaagtcta cggctccgaa cccaacgatg catatcaacc aagtaaaact aaaacttcaa      3480
     gaggagatag tttgccccaa ccatcattcc cactagcttc taccagagct cggttgattg      3540
     taaactgtac ggagtgcaaa tttccgcgag ttttgtattc gcgatatagc ctgaatgaaa      3600
     aggagttgtt cgatacgaaa cgtttcttcg atgagaacta ctacatttgt ggtagtcagc      3660
     tagaaacatt tcctgacatt tttcaacatc ctaaaattag ctgctttgat cctatccatc      3720
     ttcattatta ccagtgtcca tctctgaaag gctataaaaa tatgtgtgca aaatgccttt      3780
     ccagtaacgc gaatatcaca tataataaaa tcaatctgtg tgaaaaatgt cattcgccaa      3840
     agtccaaaac cgtggttgtt aagcagccaa aaggacgatc cgttaagaaa taatgtgtat      3900
     ttttcgatta aaatactgtt ttgttgcaat aaaaattaaa tttattgaat ttacctaaat      3960
     ttccatttta ttattttttc tcccccccct tcacaaattt ctaagcagag tgacaaaaga      4020
     aaattttaat atttgttccg gcc                                              4043
//
ID   Zator-2_DF  repbase;    DNA;    INV; 168 BP.
XX
AC   .
XX
DT   04-JUN-2012 (Rel. 17.07, Created)
DT   04-JUN-2012 (Rel. 17.07, Last updated, Version 1)
XX
DE   Zator-type DNA transposon from the Drosophila ficusphila genome:
DE   consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-2_DF.
XX
OS   Drosophila ficusphila
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; ficusphila subgroup.
XX
RN   [1]
RP   1-168
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the Drosophila ficusphila genome.";
RL   Repbase Reports 12(7), 1188-1188 (2012).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 27-bp TIRs.
CC   This consensus sequence was derived from the data released in
CC   Genbank by the Baylor College of  Medicine Human Genome
CC   Sequencing Center, prior to publication.
XX
SQ   Sequence 168 BP; 39 A; 30 C; 61 G; 38 T; 0 other;
     ggggccgtcc ataaacctcg tgacgctcct aggggggtgg ggggggttca tcagagagtc        60
     acgctttgtt gtaaggaggt tgtaatttgt atatgtgatg cgtcacatag gggggggagg       120
     gggtcaaaaa agccaaaaat tagcgtcacg aggtttatgg acggcccc                    168
//
ID   Zator-3_AAe repbase;    DNA;    INV; 4089 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   23-DEC-2010 (Rel. 16.02, Last updated, Version -1)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Zator-3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-4089
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 656-656 (2011).
XX
DR   [2] (Consensus)
XX
CC   3-bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(855..1761,1821..2312,2411..3912)
FT                 /product="Zator-3_AAe_1p"
FT                 /translation="MQRASITTFPDKKVENDGRDALYNKLVDYLQFRGAGF
FT                 KVFQKSDMEFFMSSVVSILWRLDGQWAKLLGAANVSKPPENLHFKPVDQES
FT                 FRVLSHGAHKKKTLPLLKKEDLIGDFEKLDELCTKSFLKSDGWRQVSADVM
FT                 QLKASLADYIHHLDKADEQYKAASASIMDDNRSLKTVPPKQNRTSLVQLLY
FT                 KALEDRLNSVPAYTEQNLIFFAPIERRAKYKYITGLVFDFPIQIYKTFKPN
FT                 ASFVWKITQGDESSSAVIISRIERNIHERISTDKSERLSQAYGSVSTWTKE
FT                 KVGEIVNAITEDEDLPPEQLQDSKEGFQFLLQEGFSVSEAVHMEQQAQAAK
FT                 LNKFANFWAAVSKVLANNDYTVAEERRHGETTWISPLCVSMRDLMSKCETK
FT                 MEEMFPGSNDNFIPSYEYFRLQFVPRNSHTQVSKRYYGRFDVKFGLQKRTL
FT                 HKAHVDQHYGAKQFEFLKIMADDKASIPVGFENAPVSATRRQRHVLMAGLD
FT                 GRGLNAMDHDNIPQHLIPSVAIKLYPPKELSESWYRGKPMIILKDAIFEAS
FT                 SAFRHVADLIKNIEQPDTQKPIMFIGTDGGPDHNVTSIQVMLSYVALFLEL
FT                 DLDFLCAVRTPPNFSVINPAERFMSTANIALIGVALARNDLGKNEKKVRSL
FT                 LSKKQWRDAQEKHPETNYRQLAIDGTKDARSLLSARFESLSYKGEQVRMGC
FT                 PATDDEIEACKRRVSTALGGIDFNAKIVKSQLLKENRVKDFFEKHVKATSY
FT                 AFQVKKCADKSCKYHKKVRSSRTTFDQIVWLPTPAPDANMKYTSFDSVYGN
FT                 EPSDEHVPSKIGTAITESVEKMXPKPTFPLAFTRARMIVTCTECXFPRLLY
FT                 TKYALDKKEYTKLGQFFEDKLYVCGSHLESFPEVFQNTKXSCFDPVSLHYY
FT                 QASTHLPGYKDLCAKCLDPTVTRTEGKLLFCAKCCSKSSQPINTPTTEPKA
FT                 ERRPRGRPKKT*"
XX
SQ   Sequence 4089 BP; 1263 A; 833 C; 867 G; 1121 T; 5 other;
     ggccgataca aattttattt ccactttttg tctccccccc ccttcataaa gcggaaaaaa        60
     ctgcaggggg caaaaaaaaa atatttttca ttcgcgttga aaaacaccag tgggcatatg       120
     aaaatttggc tcacgaatgt atctgagcca aagtatacat actcctcgca ctcactagaa       180
     atcttatatg ggtattgtca aaaccgagcc agtatctatc tctcctattt actcgcatga       240
     ttaaagtaaa caaggcaaca ttctatcgca tcaacgtcaa cgtatgaaag agcgagagag       300
     ccacctcttt cgagtgcacg ctatgcaaac gaatttgaca tttccatatt tagctagcag       360
     tgttgagttg tctgttgttt ttcacagaat cgcaaatttg tatttagagc aagtacagtt       420
     tacctcataa tcaccagttc caccaaaatc atctgcagca gcaacctaca acaatggtat       480
     gttttaagat ttgttgttaa aaactcttgt atagtgtctt tcttatcatc caggactcta       540
     aaactcctat cgccgtgaga atcgagcgcg aaggaaaact tctcttccaa tccgtgacat       600
     cagtagctgt tgaatcttct ttgctggaaa caattgagca ggtcttcgga ccgatagtaa       660
     atgggacgga cgcggtcgaa gctatttacg ctggatgtaa atcattcgaa aggcatgatw       720
     tgttcataat atctccctcg tgtactatcc gagatgtcgc cacagcaatt ggcacatgta       780
     cgaaagttct gtgtatacta aaggctgaaa ttacttcggg aaaggagaag acaagaaatg       840
     ctttcgatct gcttatgcag cgagcatcta ttacgacgtt tcctgataaa aaggtagaga       900
     atgatgggcg tgacgcgtta tacaacaagc tggtggatta tttgcagttt cgaggagcag       960
     gattcaaagt tttccagaag tcagacatgg aattcttcat gtcgtctgtg gtatccattc      1020
     tgtggcgttt ggatggacag tgggctaaac tgctaggggc ggcaaatgta tcgaagcctc      1080
     cagaaaatct ccatttcaaa ccagttgacc aagagtcttt tcgtgtgttg tcccatggcg      1140
     cgcacaaaaa aaagaccctt ccactattga agaaagaaga cttgattgga gatttcgaga      1200
     agctggacga actatgtacc aaatcgtttc ttaaatcgga tggatggaga caagtgtcag      1260
     cagatgtaat gcaactgaaa gcttcgttgg cggactacat acatcacctg gacaaggctg      1320
     atgagcaata taaggcagca tcggcatcta ttatggacga taaccgttca ttgaagacag      1380
     ttccgccgaa acaaaatcgt acaagcctag tacaattgct gtataaagct cttgaagacc      1440
     gattgaattc cgtcccggcc tacaccgagc aaaatctgat cttttttgct ccaattgaaa      1500
     gacgggccaa atataaatat ataactgggc tggttttcga cttccctata caaatttata      1560
     agactttcaa accgaatgca tcatttgtgt ggaagatcac ccagggagat gaatcctctt      1620
     cagccgtgat catatcacgt atcgaacgaa atatacacga gcgaatttcc accgacaaat      1680
     cagaaagatt gtcgcaggcc tatggaagtg tttctacttg gacaaaagaa aaagttggtg      1740
     aaattgtaaa tgccatcact ggtaagtttt ttcatttatc gtttttattt tcaaattcca      1800
     gttgtgtatt tatatttcag aagatgaaga tctccctcca gaacaacttc aggacagcaa      1860
     agaaggattt caatttttgt tgcaggaagg attttctgtt tcagaagcag tgcatatgga      1920
     acaacaagcg caggccgcaa aactgaacaa gtttgccaac ttctgggcag cagtttcgaa      1980
     ggtccttgcc aacaacgatt atactgtcgc tgaagaaagg cgacatggtg aaacgacttg      2040
     gatatcacca ctgtgcgttt cgatgcgtga tttgatgtcc aagtgcgaaa ctaaaatgga      2100
     agaaatgttc ccgggatcaa acgacaattt cataccatca tacgaatatt ttcgtctgca      2160
     attcgtccca agaaacagcc acactcaggt atcgaaacgc tattatggac gctttgatgt      2220
     gaaattcggt cttcaaaaac gtacgttaca taaggcacat gtagaccagc actacggagc      2280
     aaaacagttt gaattcttga agatcatggc cggtaagact ttcaaaaagt ttgttcctac      2340
     ttgtgtgaaa ctgatttgct ttttattctt taggaaaatt ttctgacgat tccatcgttt      2400
     tttttcctag acgataaagc gtctatccct gttggattcg aaaatgcacc agtaagtgca      2460
     actcgaaggc agcggcatgt cttaatggca ggacttgacg gaagagggct taatgccatg      2520
     gatcacgata atatccccca gcatttgatt ccatcggttg cgataaaact gtatcctcct      2580
     aaagagctgt ctgagtcgtg gtatagaggt aaaccgatga ttatactgaa ggacgcaata      2640
     ttcgaggcat cttcggcatt caggcatgta gcggatttga tcaaaaacat tgagcaaccc      2700
     gatacacaga agccgataat gtttattgga actgatggag gacccgatca caacgttaca      2760
     tcgattcaag ttatgctaag ttatgtggct ttgtttttgg aactggatct cgatttttta      2820
     tgtgcggttc gcactcctcc aaacttttcg gtgataaatc ccgcagaaag attcatgagt      2880
     actgcaaaca ttgccctgat tggagtagct ctcgcaagaa atgatcttgg taaaaatgaa      2940
     aagaaagttc gctcgttgct ttctaagaag caatggcgcg atgctcaaga aaagcatcca      3000
     gagacaaact atcggcagtt ggcgattgat ggaacgaaag acgcccgcag tcttttgagt      3060
     gctcgattcg aaagcctttc ttacaaagga gagcaagtga gaatgggctg ccctgccaca      3120
     gatgatgaga ttgaagcgtg caaacgtaga gtttccactg cattgggtgg aattgatttc      3180
     aacgccaaga ttgtcaaatc tcaactactg aaagaaaatc gtgttaaaga tttctttgaa      3240
     aagcacgtca aggcaacatc ttatgcgttc caggttaaga aatgtgctga caaatcttgt      3300
     aagtaccaca agaaagtacg atcgtcgagg actacgtttg atcagattgt gtggcttccg      3360
     acaccagcgc ctgatgcgaa tatgaagtac acaagcttcg attctgtata cggcaacgag      3420
     ccttcagatg aacacgttcc aagcaaaata ggaaccgcga ttactgaaag cgtggagaaa      3480
     atgmtgccca aaccaacatt ccctttagcc ttcacgaggg ctcgtatgat mgttacttgc      3540
     actgagtgcw atttcccgag actgttgtat accaaatatg ctttggataa gaaggaatat      3600
     actaagttgg gccaattttt tgaagataaa ttgtatgttt gcggttctca tctggaatca      3660
     tttccggaag tttttcagaa cactaaastg tcctgtttcg atcctgtcag tcttcattat      3720
     taccaagcta gcacacattt gccaggttac aaagacttgt gtgctaaatg cctggatcca      3780
     acagtaacaa gaacagaagg aaagctgctc ttctgcgcaa aatgttgttc aaaatcaagt      3840
     cagccgataa atactccaac tactgagcca aaagctgagc gacgaccgcg aggcaggcca      3900
     aagaaaacat agatacattg aaaaccgtta aaagactcga tggatataca atttttttat      3960
     caaaaggaat ttcaataaat aaaaataaat attttcgaaa aataaatgtt tattattttt      4020
     ttgccccccc ccccctcgat taaaattggt ccgatgggac aaaatgtcaa aaataaattt      4080
     gtatcggcc                                                              4089
//
ID   Zator-N1B_CQ repbase;    DNA;    INV; 469 BP.
XX
AC   .
XX
DT   28-DEC-2010 (Rel. 16.01, Created)
DT   28-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A Zator DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_CQ; Zator-N1B_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-469
RA   Kojima K.K. and Jurka J.;
RT   "Zator DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 649-649 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >91%
CC   identity. 3-bp TSDs are usually TWA. ~150-bp TIRs. ~83% identical
CC   to Zator-N1_CQ.
XX
SQ   Sequence 469 BP; 166 A; 85 C; 64 G; 154 T; 0 other;
     ggccgttgca aatatttttc aaagtttatg tcgccccccc ttcaaaattg gtccgaaaaa        60
     tcagggggca aaaaaatatt tttccaaaaa acttcaaaat ttcaatgaaa atagaagtca       120
     aatcaactga aaacaatcta aaatgcattt ttctgcattg ataatcatat ttagcatgtt       180
     tgggctggat taaaaatatt ttgaattttt atgaaattcc aatgcacagc accgcaaaaa       240
     cttttttttc gcaaaaaata aaattttcgt caatacttag atattttgga aactaatgat       300
     tgcaaaacaa ctggacaggt gtataatgca ttttaaaaca cttttttcat tcaaatgttg       360
     aaaccatggc tcgtaaattc aatttttaaa cttttttatt ttttcccccc ccccctcgac       420
     tttggtcaga gtcgagggac ataaacttca aaaaatattt gcaacggcc                   469
//
ID   Zator-N1C_CQ repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   29-DEC-2010 (Rel. 16.01, Created)
DT   29-DEC-2010 (Rel. 16.01, Last updated, Version 1)
XX
DE   A Zator DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_CQ; Zator-N1B_CQ; Zator-N1C_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-471
RA   Kojima K.K. and Jurka J.;
RT   "Zator DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 650-650 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >84%
CC   identity. 3-bp TSDs are usually TWA. ~150-bp TIRs. ~86% identical
CC   to Zator-N1B_CQ.
XX
SQ   Sequence 471 BP; 155 A; 95 C; 64 G; 157 T; 0 other;
     ggccgttgca aatatttttc aaagtttatg tcgccccccc cccccttcaa agtcggcctg        60
     aataatcagg gggcaaaaaa atattttttc gaaaaacttc aaaattttaa tgaaaattaa       120
     agtttaatca actgaaaacc agttaaaatg cattttcccg cgtttataat catatttagc       180
     atgtttgaac tcctttgaaa acattttaaa ttttcatgaa ataccaatgt acagtcccac       240
     gaaaagtttt ttttttgcga aaaaaaaatc cgtcaatacc tcgatatttt caaaactaat       300
     gattggaaag caactgtacg cctgtaaaat gcattttaaa acactttttt catccaaatg       360
     ttgaaaccta ggcttgtaat ttcaattttt atattttttt tttgtttccc ccccccctcg       420
     actttggtca gagccgaggg acataaactt cgaaaaatat ttgcaacggc c                471
//
ID   Zator-N1_AAe repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 657-657 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~98% identical to consensus. 3-bp TSDs; usually TWA. TIRs are
CC   ~30 bp long.
XX
SQ   Sequence 165 BP; 50 A; 26 C; 46 G; 43 T; 0 other;
     ggggccgttc aaatattacg taacgcaaca ggggggggag ggggtcttac atagcgttac        60
     ggtccataca aaaatttaaa attttccata caaaagctgt tacgtggggg tgggaggggg       120
     tctaaaattg acaaattttg cgttacgtaa tatttgaatg aaccc                       165
//
ID   Zator-N1_CQ repbase;    DNA;    INV; 471 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.01, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A Zator DNA transposon family from Culex quinquefasciatus -
DE   consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_CQ.
XX
OS   Culex quinquefasciatus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RA   Arensburger P., Megy K., Waterhouse R.M. and Abrudan J. et al.;
RT   "Sequencing of Culex quinquefasciatus establishes a platform for
RT   mosquito comparative genomics.";
RL   Science 330(6000), 86-88 (2010).
XX
RN   [2]
RP   1-471
RA   Kojima K.K. and Jurka J.;
RT   "Zator DNA transposons from the southern house mosquito.";
RL   Repbase Reports 11(1), 651-651 (2011).
XX
DR   [2] (Consensus)
XX
CC   This consensus is generated from 30 sequences with >79%
CC   identity. 3-bp TSDs are usually TWA.
XX
SQ   Sequence 471 BP; 151 A; 84 C; 62 G; 174 T; 0 other;
     ggctggtaca aatattttta aaagtttttg tcaccccccc ccccccttca aaattggccc        60
     gaaaaatcag ggggcaaaaa aaatattttt acaataaact tcaaaatttc aatgaaaatt       120
     caagtgcaac cagctgaaat caaattaaaa tacattctcc tgcgtttaaa atcattttta       180
     gcatgtttgg gtttattaaa aaatcttaag attttttgaa aattttcgat gcaaaatctt       240
     tttttttcga tacaattttt gtttttgtca gatcttagat tttttgaaaa ctaatgattg       300
     caaaacaact gaactagtgt aaaatgcatt ttaaaacact tttttcattt aaatgtgaag       360
     actatggctt gttatttaaa tttttatatt tttttatttt tttgcccccc cccccccttg       420
     acctcggcca gggccgaggg acaaaaactt ttttaaatat ttgcatcggc c                471
//
ID   Zator-N1_DTa repbase;    DNA;    INV; 536 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   01-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-536
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4704-4704 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 536 BP; 174 A; 72 C; 130 G; 160 T; 0 other;
     ggggctgtcc atatattacg taatcaccta ggggggggag ggggtcattg aaatgattat        60
     gtttgattac atggggaggg gggggtcttg cacaatgatt acgtaatcat tttatataaa       120
     tttttttatt taaagaattt atttaaaaac ttttttcctt taattatatc tacaaactta       180
     gataggaaag cagagaaaaa atttttttag tggctgggcg gcgaaaaaga aaatgtttag       240
     tggttcaatc acacgaagga cgcgaagacc tggaatggct tgacgaagag tatgttggag       300
     ataatttcag cgtagacgaa ccgaatgtgt cataccaaac tccatttata aacaatatat       360
     aagattgggt tgcatctccg tttgaatcca cagattaaaa caaaaaaaat tttattcttg       420
     ggattacgta atcattgggg ggggggttgt ttattgaatg attacgtttg atcaccaggg       480
     gggggagggg gtcaaaaatc accaaaaacg tgattacgta atatatggac agcccc           536
//
ID   Zator-N1_PPo repbase;    DNA;    INV; 449 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   DNA transposon from Papilio polytes: consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-449
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 2754-2754 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 25bp TIR.
XX
SQ   Sequence 449 BP; 146 A; 63 C; 108 G; 132 T; 0 other;
     aggggccgtc catatattac gtcattctaa attagggggg gttggtctgc ggatgacggt        60
     aaatgataga taggaggggg ggtttcgaaa ttgacgtcat tcttatttat ttatagttta       120
     ttgttcacgt acaaaagatt atttctaaaa agaaatttct tccagcacac ctagtaagtg       180
     agactgcaaa tgtgagaggc ggctaaggcg cgtacaatac taaaataact cataaaacat       240
     acaagtaaat aaaaaggtga ttctataacc aagtgtttta acatataata cctatttttc       300
     tcaaatctgc aatgttttaa tttcgtcaaa ctggtaatga cgtcaatttt gggagaaggg       360
     ggggggtctt agaaatgacg ataggatgat tgtagggggg gaggtctaaa gtctgaaaaa       420
     atcgatgacg taatttatgg acggcccct                                         449
//
ID   Zator-N1_RPr repbase;    DNA;    INV; 416 BP.
XX
AC   .
XX
DT   24-JUL-2012 (Rel. 20.10, Created)
DT   24-JUL-2012 (Rel. 20.10, Last updated, Version 1)
XX
DE   DNA transposons: consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N1_RPr.
XX
OS   Rhodnius prolixus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera;
OC   Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Rhodnius.
XX
RN   [1]
RP   1-416
RA   Bao W. and Jurka J.;
RT   "DNA transposons from insects.";
RL   Repbase Reports 15(10), 3333-3333 (2015).
XX
DR   [1] (Consensus)
XX
CC   TSDs are 3-bp long. 3'-end is similar to those of Zator-1_DPu.
XX
SQ   Sequence 416 BP; 129 A; 56 C; 98 G; 133 T; 0 other;
     ggggccgtac ttaaattacg taacgaacgc aaggggggag gggggtaagg ctcgattgtt        60
     accattcgtt atggttcggg ggaggggttt ttttaatgct tgtacgtaat ttttccaatt       120
     gaatctataa ttttttggtc attaatggaa aaatactaac gatatttttc gcgccaaatt       180
     ctactatagc caaccttcat actaagtgat aatgtaatta aataagtaat aaataaaaaa       240
     tatatgtttg attttaatta aatactatgc aatgacgata ttccataaca aaaaattacg       300
     tacatttggc taggggggga ggggaggttg acattttgtt acgatctgtt acatcggggg       360
     ggggggaggg attaaaaagc tctttaaatt gcgttacgta atttaagtac ggcccc           416
//
ID   Zator-N2_AAe repbase;    DNA;    INV; 1690 BP.
XX
AC   .
XX
DT   23-DEC-2010 (Rel. 16.02, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N2_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1690
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 658-658 (2011).
XX
DR   [2] (Consensus)
XX
CC   ~91% identical to consensus. 3-bp TSDs; usually TWA. TIRs are
CC   ~35 bp long. Both termini are ~80% identical to those of
CC   Zator-2_AA.
XX
SQ   Sequence 1690 BP; 551 A; 270 C; 263 G; 606 T; 0 other;
     ggccggaaca aatttgaaat tttacttttg tcaccccccc cccttcaaat ttttcaaaaa        60
     gtcagagggg ggaaataaat aaaatgtctt attttcagtg ttggttttca ttgttttttg       120
     tgtttttagc tagttttgta attcgtcctt acgatattac atgagataac aggtgttatt       180
     ggattataag tcctaaatct gttcgttaat gctaataggt gtgggatttt ccattgaacg       240
     ttttttcttt tagaataaag tttacgccac ttttactgta acagtgtagc ctttgaaaat       300
     agaatatttt agtgatttcc atgaattatt atttatataa actttcaatg aacaatcaat       360
     ttgtcaaatc aattcagcaa ttggctctta aaatttattt gaatacatgt tttcctagta       420
     gatcctcctt cttctggatg tataaatatt gaaagcgtga tcatcatcca caagctgcgt       480
     atcaaatgtc cttgtccttg tcttcattgt gtttgtgtaa acgttatgat tctatttttt       540
     taattaagaa taaaaccata tttatggggg aaatcgctct ataaatataa aaccgtatat       600
     agaaaaagtg ccatcaagct gcttttcagg acacttacaa ctagggacaa tggaaattcg       660
     cgatttcgcg gaagccgcga aatttggcct tcgaccgaaa ttcaggaaaa cccgcgaaat       720
     tcgtttgatc gttttaattc atatgaaaaa cgcagtaatt ttcagtttat tgcctatgaa       780
     aatggtttat ttattttgag tcaaggttcc tccaacaatt ttcgtatctt ttagtttatc       840
     ttggacttct tctgattgct tgttttgttt taaattttaa attgccactc tggtaataaa       900
     cttattatct tgatctgtaa aatacaaatt acaattatta acacaccgct gagtttacac       960
     atttgaaatg tattttcact gagaatatgt actttagtgc aaaatttgac caaaagtatg      1020
     gggccgcgac aaagccgaga aattttagtt tcatcacctt cgtcacccgt gaaatttaaa      1080
     gaattttact gcgaatttcc attgtcccta cttacaacct attatactgc cgtcctatgc      1140
     atatttatct cacagtcgct aaggtttgca aagaacatgg cacaagaggg catagaagaa      1200
     caatatattt cacagagcca attttcttca attttattca aatctagtga aatattttta      1260
     caaacaaaat gttacatata tgttaaatca aattaaaata atctaaattt aatttaaagt      1320
     tgcatccaag tgcaacattt ctgcagtgtt cctaaaattg taaatagctt aaacacaatt      1380
     tgaaagttta atattttctc tcaccaaaac tcaagaaaaa gacggtaaaa aaccctggag      1440
     attgttgtta tgaaaaatcg aattatgaaa aatgttatag attaatgtta tgaaaaataa      1500
     aaaaatggca tgattattgt tcaaaacgtt ttgatttgac ggttatatgt ggcaaaaaca      1560
     tggttttgca gcatatgagt ataaaaaatg ataaatttac ctgaatttcc attttattat      1620
     ttattgtccc cccccctcga cacattttga tggaaggtga caaaagaaga ttttaagatt      1680
     tgttccggcc                                                             1690
//
ID   Zator-N2_DTa repbase;    DNA;    INV; 155 BP.
XX
AC   .
XX
DT   08-JUL-2021 (Rel. 26.09, Created)
DT   19-AUG-2021 (Rel. 26.09, Last updated, Version 1)
XX
DE   DNA transposon from the Drosophila takahashii genome: consensus.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N2_DTa.
XX
OS   Drosophila takahashii
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; takahashii subgroup.
XX
RN   [1]
RP   1-155
RA   Bao W.;
RT   "DNA transposons from the Drosophila takahashii genome.";
RL   Repbase Reports 21(9), 4643-4643 (2021).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 3-bp TSDs.
XX
SQ   Sequence 155 BP; 43 A; 24 C; 40 G; 48 T; 0 other;
     ggggctgtcc atatattacg taatcatcta gggggggggt ccaccaaatg attactctag        60
     tgcaaaattt tttttttttt gtatgaagaa ttgattacat gggggggggg tcaaaaatcg       120
     ccgaaattgt gattacgtaa tatatggaca gcccc                                  155
//
ID   Zator-N3_AAe repbase;    DNA;    INV; 1503 BP.
XX
AC   .
XX
DT   12-JAN-2011 (Rel. 16.02, Created)
DT   20-MAR-2019 (Rel. 24.03, Last updated, Version 2)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N3_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.
RA   et al.;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-1503
RA   Kojima K.K. and Jurka J.;
RT   "DNA transposons from the yellow fever mosquito.";
RL   Repbase Reports 11(2), 659-659 (2011).
XX
DR   [2] (Consensus)
XX
CC   >93% identical to consensus. 3-bp TSDs; usually TWA. TIRs are 29
CC   bp long. Both termini are >80% identical to those of Zator-1_AA.
XX
SQ   Sequence 1503 BP; 509 A; 209 C; 257 G; 527 T; 1 other;
     ggggtcgtcc ataaatgacg tagcatttta ggggggaggg gggtcttcac gaatttgtga        60
     cgatgtgtga cgagggggag ggaggggtcc caactagtgg acgtagcatt ttgaatmatg       120
     ttggtaaaaa gagtagcgct gaaaaaattg acaaacagtt ttttttatca aacttctttt       180
     ttgtttgact tataaacttg ggttatgaaa tgagcttcaa acattaatat gataagattg       240
     aaaaaatttc taagaaattt taaattttcc tgataaatgc aatcaaacag attttatgaa       300
     gctttaaata gttatgtgaa tattatattg tattcgtgtc taaatttata aataaacaaa       360
     acaaaaagtt taataagtta agtaaaaatc aatgctttat cgacttggaa aacattgttt       420
     tttcattttt aacaagacat agaatcaacc gttttagttt tattcatatt ttctgttgga       480
     gctttatttc ttcaaaacaa tatgctcatt tggcaaatat tacattaaaa caagatattt       540
     attccgtgaa ttatgcgttc aatgttgcag gagatctcca cccagtcaac tcatcgattt       600
     gttttgatat atcaatgctc ttgatggaac agcctgaata ataataggac aacagattcg       660
     agtgttatcg aaattgtcct atcattcagt tttctaaatc actcggtaat tcgaagaaag       720
     agcattttta ttatttcatt gtttcattat gagttgtgta agaatatttc agtatgggga       780
     acgataatga agtttagctg aaatattaat aaagatgaat aattgtataa aaatcgctaa       840
     gattttctaa acattccaaa tattacaatt gttatctttt ctctatctgg ccactgtttg       900
     ctgaatggat ttgaatttgg ataataatga cgaagatcca ttccaaatta atattttgtt       960
     gatcatattc actgaaatct gtttcttaac cacgaataat aaaaaaaaat cctctaatat      1020
     aacaaaattt ctgttcaata tattataaaa tatttgaccc taactcgtta ctgttagctt      1080
     catcaatcca acaagattta cttttttttc tacattttca gctgtaaact tgtttttcat      1140
     ggtaacaaca gcaaaagtaa tacaatttaa cctatattaa actggaaacc aaaattatgt      1200
     aacttaaaca ggaaataagt ttgtttaaaa ctgttttcca aattactttt gagcgctacg      1260
     gtatatcaaa ctattattcg tcagattatc ctgacgtttc agtcagtaat taatatcaaa      1320
     ctttgttttg aatttctgga ttttaatgtt tcgttcaacg ccaggaaaac aaaaatatag      1380
     gggggggggg gtgcttgata tgctacgtat tttccaaggg gggtatcagc atttgtgacg      1440
     aaatgctacg aggggggtgt aaaaaatcag tgaaaaaatg ctacgtcatt tatggacggc      1500
     ccc                                                                    1503
//
ID   Zator-N4_AAe repbase;    DNA;    INV; 165 BP.
XX
AC   .
XX
DT   08-JAN-2019 (Rel. 26.01, Created)
DT   08-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N4_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-165
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-165
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 154-154 (2021).
XX
DR   [2] (Consensus)
XX
CC   >96% identical to consensus. 3-bp TSDs; usually TWA.
XX
SQ   Sequence 165 BP; 50 A; 25 C; 43 G; 47 T; 0 other;
     gggcctgttc ataaatttca taacgctgaa gggggtgggt gggtgtcctt gaaatgttac        60
     agctcataca aaatttgtaa aacattcata caaaaagcgt tacaaggggg tgggtgggta       120
     tcaaaaatgc ccatttttgg cgttatgaaa tttgtgaatg aaccc                       165
//
ID   Zator-N5_AAe repbase;    DNA;    INV; 162 BP.
XX
AC   .
XX
DT   08-JAN-2019 (Rel. 26.01, Created)
DT   08-JAN-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N5_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-162
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-162
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 155-155 (2021).
XX
DR   [2] (Consensus)
XX
CC   >98% identical to consensus. 3-bp TSDs; usually TWA.
XX
SQ   Sequence 162 BP; 49 A; 30 C; 51 G; 32 T; 0 other;
     ggggtcatgc acaaattacg tcacgctcca agggggggag ggggtcgagc caagcgtgac        60
     aagccttaca aaattttcgg aggactcata caaaaagtgt gacaaagggg gggggggtcg       120
     aaaaagttga aatttagcgt gacataattt gtgtaccatc cc                          162
//
ID   Zator-N6_AAe repbase;    DNA;    INV; 90 BP.
XX
AC   .
XX
DT   17-APR-2019 (Rel. 26.01, Created)
DT   17-APR-2019 (Rel. 26.01, Last updated, Version 1)
XX
DE   A Zator DNA transposon family from Aedes aegypti.
XX
KW   Zator; DNA transposon; Transposable Element; Nonautonomous;
KW   Zator-N6_AAe.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-90
RA   Nene V., Wortman J.R., Lawson D., Haas B., Kodira C. and Tu Z.J.;
RG   et al;
RT   "Genome sequence of Aedes aegypti, a major arbovirus vector.";
RL   Science 316(5832), 1718-1723 (2007).
XX
RN   [2]
RP   1-90
RA   Bao W.;
RT   "DNA transposons from the yellow fever mosquito genome.";
RL   Repbase Reports 21(1), 156-156 (2021).
XX
DR   [2] (Consensus)
XX
CC   >92% identical to consensus.
XX
SQ   Sequence 90 BP; 25 A; 15 C; 25 G; 25 T; 0 other;
     gggcccattc acaaatttca taacgctgaa gggggtgggt gggtgtcaaa aatggccatt        60
     tttggcgtta tgaaatttgt gaataaaccc                                         90
//
ID   ZEBEDEE     repbase;    DNA;    INV; 3256 BP.
XX
AC   Z86116;
XX
DT   13-MAR-1998 (Rel. 3.02, Created)
DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
XX
DE   A.aegypti DNA, copia-like transposable element Zebedee.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; LTR; ZEBEDEE;
KW   copia-like retrotransposon; endonuclease; integrase;
KW   reverse transcriptase.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-3256
RA   Warren M.A., Hughes A.M. and Crampton M.J.;
RT   "Zebedee: a novel copia-Ty1 family of transposable elements in
RT   the genome of the medically important mosquito Aedes aegypti.";
RL   Mol. Gen. Genet 254(5), 505-513 (1997).
XX
RN   [2]
RP   1-3256
RA   Crampton M.J.;
RT   "ZEBEDEE.";
RL   Direct Submission to Genbank (11-MAR-1997)Crampton J. M.,
RL   Liverpool School of Tropical Medicine, Molecular Biology and
RL   Immunology, Pembroke Place, Liverpool, UK, L3 5QA.
XX
DR   GenBank; Z86116; Positions     424    3679.
XX
CC   Zebedee appears to be flanked by 22bp direct repeat sequences.
CC   A single open reading frame (ORF) of 972 amino acids has the
CC   coding potential for a polyprotein with homology corresponding
CC   to the conserved amino acid motifs of Long Terminal Repeat
CC   retrotransposon protease, integrase and reverse transcriptase.
CC   The Zebedee family appears to have a low copy number
CC   number in different strains of Ae.aegypti. Transcripts of
CC   the elements have been detected in culture mosquito cells.
CC   Despite the lack of a gag homologue or the LTR hallmarks of
CC   previously characterized Copia-Ty1 RTPs, phylogenetic analyses
CC   place Zebedee within this group, showing considerable homology
CC   to Copia from D.melanogaster [1].
XX
SQ   Sequence 3256 BP; 875 A; 760 C; 876 G; 745 T; 0 other;
     cttcgttgtc tcggtcatat cagtgaaagt ggaatggcct ctctggtgcg tgagaacctg        60
     gcccttggtg tgcgtttcaa gccggagaag attaagttct gcgatgtgtg tgtcccggaa       120
     aaacacagcc gggacccgtt cgatggtgca agagaccggg cgaccagatc gttggagcgt       180
     atccattcgg acgtgtgtgg gccgattgag cctgcatcct gggaaggtca tcgctatctg       240
     gtctcgttca ttgatgacta gggtaacggt cgtattttgg accccctaag gaagtgattt       300
     tagttttttg tcccaattaa ttaattgcac agcgtaacca agtcaaagaa catgccaaaa       360
     tgtagagaaa aacttctcct acgagataaa aatgccccta cgatcatgaa ggatccaaaa       420
     aatgtcgaaa ataattgaat tgtgaagaac tgtttctcat tattttggac acaccaatat       480
     attttggacc cctggaattt ttttatcgtt tggcgaaaag tccacgacac tggttgtata       540
     atatgctcgc ccatagtcta atcaatcgat tgacattgga aaaccgaaga aattctacgc       600
     ttttagtgca gaaatttgaa aaacgttctt gtttacattt aaaaaaattc tgacggcttc       660
     aatttctgtg tgtaacgttt tgtaacggtt gcatggatga accgattaaa ttaaattaat       720
     ttcagataaa ataaacacaa tttctatgta taaacggttg atgcaaatgc ggaatagtcc       780
     tatctttcca aatggcatgc gaattgagtt gaaggaagga aattgaagcg atggcgactg       840
     cggcttgtgg cacgaagatt tcaaaactga ccgtagacca gggacgtgag tacttctcaa       900
     ccagccagaa gaactactac aaagcgaagg ggattcaggt cgagccaact atagcctact       960
     ctccgcaaca aaatgaagtg gcggagagat tcaacaggac cctaatcgag aaggtacgta      1020
     ccatgcaaat tgaatctcat gctccaaaat cgttctggtg tgaagcggtg ctgtcggccg      1080
     tgttcctgat caatcggagc ccaacctcgg ctgttttaag aaacgttacg cctgctgaac      1140
     tatggtacgg tcggaagcca agtctggaga aggcgcgcgt ttttggttgt caagtctatg      1200
     cctggatacc gatcaacgga ggaagaagtc ggacacgaag agtcgacagc tgatcatggt      1260
     tggttacgcg cccaatggct accggctgtg ggacaaggac gagaggagaa tcgtaattgc      1320
     tcgtgacgtc aagttcaatg aaaactactt tccgtgggcc aacaatgcaa gagatcgcgc      1380
     ggaagagaga ctggtggtac ccttggtcta cgagcaagag ggggaagaac atgccaagga      1440
     agccattgat gaggacgcca tccaacctga tgatgcggcg gtcggtccgt tcgacccgtc      1500
     cgaccacgaa ggcgaacttc taaccgagga tgataccgat gacgaagctg cgacggaact      1560
     agccaaccct gcgctccctt cgcaatcaga tctggacatg tcctccggcc ctagaggcga      1620
     gcagtccgag aggcgcagga aacgggagcg ccgttttccg ggtaagttcc ttgattatct      1680
     tactggattt agagctagtg ctgttggtcc tccctcccct tcagacgttc ccgaaacata      1740
     cgatgaaatc cgtacccgtg aggaatcgtg ccctctggaa ccaggcggtg caggaacgag      1800
     ctccgttcaa tgaaggccaa acgatgtctg gaagagtggt gggcgtgccc ccgccggcgt      1860
     gaagctactc aaaacgaaat ggtcttccga ctcaaggaga acgaggctgg acgatcggtt      1920
     cggcataagg cgcgactggt ggtcaagggt ttccttcaac gtcctggaat cgatttcgag      1980
     gacacgttcg caccagtggc taagctgtct accgtgcgag tggtgctagc cgttgcggtt      2040
     catcatggtt tcaaggtgca ccagatagac gtaagcacag cgttcctcca cggtatgctg      2100
     aaggaagatt tgttcatgga agaacctgaa gacgtgaagg cgaagcccgg cagtgtgtgc      2160
     aagctgcaga ggtcgttgta cgggttgaag caagcaccac gttgctggaa cgaaaggttc      2220
     aactcagcgc ttctgaagct gggattcagc agatcccacc gtgcctactg tctctacgtg      2280
     tgcaacactg aaggggatga agttttctta gtgctgtacg tcgacgacct cctgatagcc      2340
     ggacggaaca ttcgaacaat tcagaagctg aagcgccgtc tttccgatga gttctaaatg      2400
     accgattgcg gcgacgaggt ttttctttgg ggatgcggct cgcttacaat ccggagcatg      2460
     gtgacctgaa gttgacccaa gaaacagctg ccacgaagat cttggagaag ttcgctatga      2520
     ctgaatgtta ccccgccaag aatccgatgg agaaaggatt gcagcctgat gtatcaaatg      2580
     ctgtgtgcgc ccggatttgt gctacccggt cagctacttg ggaaggttcc agcaatcatc      2640
     aacgaacaat cactggcagg cgctgaagcg agttgtcaga tacctctaag ggacggctac      2700
     cctgggacta ctctacaaga gaaacgagaa cagcagaccg ctcgtcggat acgtggacgc      2760
     cgactgggca tccgatgcgg aagatcggaa tcggtaacag gtttcctgtt caaagtctac      2820
     ggcatcgacg gtatcctggg ctagtcggaa gcagccaaca gtctccatat cgtcaagcga      2880
     ggccgaatac gtcgcgctga gtgcagccgt atcggaagct atctggttgt ccggaatttt      2940
     agaagacctc aactgcaaga agctgacgga ccctgtatca atatacgaag acaaccgtgg      3000
     ctgcataggg ctgcccaaaa atgctgaatc gaagcgcatc aagcacgtaa atatcaagca      3060
     ccactttatc aaggaccatg tggctgccgg gaccatcaaa atcgaaccga tcagcacccc      3120
     cgagcagcaa gcagacattt tcacgaaggc gttagatgtc acccggttcc aatccctcag      3180
     gagcaagatc ggggtcaccg attgagagag ggtgttagaa atctagcact cgctgactgc      3240
     tggatttaca tcacag                                                      3256
//
ID   ZENON-1B_PPo repbase;    DNA;    INV; 235 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-1B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-235
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3192-3192 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~91% identical to consensus. 5'-truncated. ~95% identical to
CC   ZENON-1_PXu.
XX
SQ   Sequence 235 BP; 47 A; 69 C; 56 G; 63 T; 0 other;
     ctcaacttgc ggttttcgcg gaactttctg cctcgcacag ccgcgttgtg gaatggtctg        60
     tcctcggcgg tatttccaaa ccgctacgac ttagggtcct tcaagaagcg agctatcacc       120
     tcctcaaagg ccggcaacgc atctgcagtt cctctggtat tgcggatgtc catgggcgtc       180
     gatgaacatc tcggtgttcc cgctgctcgt ttgcccctct cttataaaaa aaaaa            235
//
ID   Zenon-1_Hmel repbase;    DNA;    INV; 3397 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a CR1/Zenon element from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Zenon-1_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3397
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           79..3330
FT                 /product="Zenon-1_Hmel_1p"
FT                 /translation="SHVASNGNTHGQTRPDHYHPRHLKPALSSGFMPLRFA
FT                 LGNAGLRSPTPTPPWNMKAAHKENLPQEGTSTSGAGESLPESSNSGCPSNS
FT                 GEGTVPRTRPNCKQGKRDVRPTATPTTLNVDFSNIRGLHSNLNAVHHHLET
FT                 ARPALLFLTETQIVRPSDTAYLQYPGYKIEHNFMPHAGVAVFVREDLSFRR
FT                 LANLEGRDLSTIWLRVDSDDRTRVYACLYRSHSGNAETDRLMEHMQSAIDD
FT                 MLSQIPSAEVVILGDFNAHNASWLGSRTTDHAGRAVFDLATANGLSQLVES
FT                 PTRLPDVDNHNASLLDLLLTSHPEQYQVVVDAPLGSSDHCLVRSVVPIKRG
FT                 SRRTPATRRVWHYKSADWDGMRTFYSSYPWGPVCFSSDDPSTCAAAVADVV
FT                 LQGMELYIPSTVVPIGGKSQPWFDTSCKLAALSKREAYQIWAEALVTKDPK
FT                 VKASKREYNRASRSFKRQIAKARSEHIAKIGEKLESYPSGTHQFWALSKAA
FT                 LGNFSQPSLPPLRKGNDILVHTAKEKADLLGALFASNSTLDDQGSTPPTIP
FT                 RCQSSMPEVKFSQKAVRRALSSLDIHKSSGPDGISPLVLRSCAPELTPVLT
FT                 RLFRHSYSVGVVPDSWKSALIHPIPKKGDGSDPSNYRPIAITSLLSKVMES
FT                 IINSQLLVYLEDHRLINDRQYGFRHGRSTGDLLVYLTHRWAAAIESKGEGL
FT                 AVSLDMAKAFDRVWHGALLAKLPSYGLPENLCRWIASFLTGRSIKVAVDGF
FT                 CSXHMPVNAGVPQGCVLSPTLFLLHINDMLEDSSIHCYADDSTVDAVYSGR
FT                 ASLSRENAEQCRNKLVSSVEASLENVSSWGEKNLVQFNPLKTQVCALTTKK
FT                 TPFIVSPVFQNTPLSAAPSISILGLNVSSDCQYRDHLESKAKLASKKLGVI
FT                 NRARRYFTPKHRLALYRAQVRPHMEYCSHLWAGAPQYQLDPFDRIQRRAVR
FT                 IIKDPVSCERLDTLALRRDVSSLCVLYRIYHGECSEELFDLLPAAEFSNRT
FT                 ARHKLKYHPHHLDXWHSTTVRFRRNFLPRATELWNSLPAAVFPGRYDMGTF
FT                 KKRVYLHLKGRQRTCSSSGAARGRGRR"
XX
SQ   Sequence 3397 BP; 776 A; 963 C; 846 G; 806 T; 6 other;
     gccgtgtgat cccggcctag aataggatca ccctggtact gatggtgtcg taagaggcga        60
     ctaaagtacg tgtggtagag tcacgtcgcc agcaatggca acacgcatgg gcagactcga       120
     ccggatcatt accacccccg gcatttaaaa ccggcgttaa gtagtggctt tatgccactg       180
     cgtttcgcat taggtaatgc cgggctccgg agcccaaccc ccacccctcc ctggaatatg       240
     aaagcggcac ataaagagaa tctaccccag gagggtacca gcacctccgg tgctggagaa       300
     tccctccctg agtcctcaaa ctcaggctgc ccttcgaatt ctggggaggg cacagtaccg       360
     cgcacaagac caaattgcaa acaaggcaaa cgagacgtac gccccacggc aacccctacc       420
     acactaaacg tggacttttc yaatatcagg ggtcttcact ccaacctgaa tgccgtccac       480
     caccatcttg agacggcacg gccggccttg ttatttctga cggagactca aattgtccga       540
     ccgagcgaca cagcctacct ccaatacccc ggctataaaa tagaacacaa ctttatgcct       600
     catgccgggg tcgctgtgtt cgtaagggag gacctgagtt tccgtcgtct tgctaatctt       660
     gaaggtcggg acctgtcgac tatctggctc cgtgttgact cggacgatcg aacccgagtc       720
     tacgcatgcc tttacaggtc ccacagtggc aatgcggaaa cggatcggct catggagcac       780
     atgcaatcgg ccatcgacga tatgctctca cagatcccct ctgctgaggt cgtgatactt       840
     ggcgatttta acgcgcacaa tgccagttgg cttggatcac gcaccaccga ccacgctggg       900
     agggccgttt ttgaccttgc tacggcgaat ggattgtccc aattggttga gtcgcctacg       960
     cgactcccgg acgtggacaa ccacaatgcc tccttattgg accttctgct gacttcgcac      1020
     ccggaacagt accaggttgt cgtcgatgct cctttggggt cttctgacca ctgcctggta      1080
     cggagtgtcg tgcccattaa gcgcggcagt cgcagaacac ccgcaactcg tcgcgtctgg      1140
     cactacaagt cagcagattg ggatgggatg cgtacatttt actcatctta tccctggggv      1200
     ccggtttgct tctcttctga tgatcctagt acctgtgccg ctgctgttgc cgacgtggtt      1260
     ctgcagggca tggaacttta tattcctagc actgtagtgc ccatcggtgg caagtcacag      1320
     ccttggtttg atacgtcttg caaacttgct gcccttagca aacgcgaggc atatcaaatc      1380
     tgggccgagg cactggttac taaggatccg aaggtgaaag cctcaaaaag agagtataac      1440
     cgggcctcta ggtcctttaa gcggcaaatt gccaaagcaa ggtccgagca tatcgccaaa      1500
     atcggcgaga agcttgagag ctacccgtcc ggaactcacc agttttgggc gctctcaaag      1560
     gcggcactcg gcaacttcag ccagccttcg cttccgcctt tacgcaaggg gaatgacatc      1620
     ttggtccata cggcgaaaga gaaagccgat ctcctgggcg ctctctttgc ctcgaactcg      1680
     actttggatg accaaggatc aacgccaccg accatcccgc ggtgccagag ctcaatgcct      1740
     gaggttaagt tcagccaaaa agctgtaagg cgagctctgt cctctttgga catccataag      1800
     tcgagcgggc cagatggcat ctccccctta gtgcttcgtt cttgtgctcc tgagctgaca      1860
     ccggtgctaa cgcgtttgtt tcggcactct tactcagtcg gcgtagtccc agattcatgg      1920
     aagagcgctc ttatccaccc gatcccgaag aagggcgatg gttccgatcc atctaactac      1980
     aggcctattg ccatcacctc cctactctca aaagtcatgg agagcatcat caatagccag      2040
     ctcttggttt atctagagga tcaccgattg attaatgacc gtcaatatgg cttccgccat      2100
     ggtcgctcaa ccggtgatct tctggtttac cttacccacc gttgggctgc ggctattgaa      2160
     agcaagggag agggcctggc agttagtttg gacatggcga aggcctttga tcgagtgtgg      2220
     catggggcgc tccttgctaa acttccatcc tatgggcttc ccgagaactt atgcaggtgg      2280
     atcgccagct ttctcactgg gcgcagcatc aaggtcgctg tcgacggttt ttgctccaah      2340
     catatgcccg tgaacgctgg cgttccccaa ggctgcgtgc tgtcccccac gctgtttctt      2400
     ctgcatatca atgacatgct ggaggattct agcattcatt gctatgcaga tgacagcacg      2460
     gtggacgctg tttactccgg ccgcgcaagt ctttctcggg aaaacgctga acagtgccga      2520
     aataaacttg tgtcttctgt tgaggcatcc ctcgagaatg tctcttcatg gggtgaaaag      2580
     aacctggtcc aatttaaccc cctgaagaca caggtttgcg cgttaaccac aaaaaaaacc      2640
     ccatttatcg tatcgccagt ctttcagaac actccccttt cagccgcgcc cagtatcagc      2700
     atattgggcc ttaatgtttc gagtgactgc cagtatcgcg atcatctgga aagcaaggcc      2760
     aagttggcct cgaagaaact gggggtcatc aatagagcga gacggtactt cacgccaaaa      2820
     caccgattgg ccctatatag ggcccaggtt cggccacaca tggagtactg ttctcatctc      2880
     tgggctggtg caccccagta tcagcttgac ccatttgatc gcatacaacg tagagctgtt      2940
     cgaatcatta aggacccagt aagctgtgaa aggcttgaca ctttggctct gcgtagagac      3000
     gtctcctcgc tgtgcgttct ctatcgcatt tatcatggtg agtgttctga agaactgttt      3060
     gacctgttac ctgccgccga attttchaac cgcacagcac gtcacaaact taaatatcat      3120
     ccacaccatc tggatrcgtg gcactccact actgtgcggt ttcgtagraa tttccttcca      3180
     cgcgccaccg aactgtggaa tagcctaccc gcggcagtgt ttccaggtcg gtacgatatg      3240
     ggtaccttca aaaagcgcgt ctatctccac ctcaaaggcc ggcaacgcac ctgtagctcc      3300
     tctggtgctg cacggggtcg tgggcggcgg tgatcatcat caggtgaccc gaacgctcgt      3360
     ttgccttgtc ctttttccat aaaaaaaaaa aaaaaaa                               3397
//
ID   ZENON-1_PPo repbase;    DNA;    INV; 1493 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-1_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-1493
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3193-3193 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1..294,298..555,559..1428)
FT                 /product="ZENON-1_PPo_1p"
FT                 /note="reverse transcriptase."
FT                 /translation="LFSKVMETTINCQLMRYLEEHQLLSDSQYGFRQRRSA
FT                 GDLLAYLTHRWSDAIEGKGEALAVTLDVAKAFDRVWHKALLSKLPSYGLNE
FT                 KLCAWISSFLGRSIKVVVDGACSDLKPINAGVPQGCVLSPTLFLLHINDML
FT                 RIRSIHCYADDSTGDALYPARANVSRATADENRNKLVSELETFLGVSDWGR
FT                 QNHVDFNPKKTQVCAITTKKDPFVVNLRFENTPLVATASIGILGVDISSDV
FT                 KKDPFVVNLRFENTPLVASASIGILGVDISSDVQFRGHLEDKAKLASKKLG
FT                 VLSRAKQYFQPGHRLLLYKAQVRPHMEYCSHLWAGAPQYQLLPFDRIQRRA
FT                 TRIVNDRALTDRLDPLALRRDVSSLCIFYRIYHGECSEELFGTIPAAEFRH
FT                 RTTRQTARYHPHHLDGWHSTTVRFSRNFLPRTAALWNGLSSAVFPNQYDLG
FT                 SFKKRAYHFLKGRQRICSSSGVADVHGRR"
XX
SQ   Sequence 1493 BP; 335 A; 410 C; 374 G; 374 T; 0 other;
     ttgttctcga aagtcatgga aacgaccatt aattgccagc ttatgaggta cctggaggag        60
     caccagctgt taagcgattc tcagtacggt tttcgtcaac gtcgctcagc tggtgatctt       120
     cttgcgtacc tcacgcatag atggtcggat gcaatcgagg gcaagggtga ggccctagca       180
     gttactttgg acgtggccaa ggcctttgat cgggtgtggc acaaagcact tctttcgaag       240
     ttgccttcct acgggctgaa cgagaaactc tgcgcctgga tttccagctt cttgtagggt       300
     cggagcatca aggtcgttgt cgacggtgca tgctctgacc tgaaaccaat caatgctggt       360
     gtcccacagg gctgtgtact gtctcccacc ctgtttcttc tgcatatcaa tgacatgctg       420
     cgaatacgca gcattcattg ttatgcagac gatagcactg gtgatgcact gtacccggcc       480
     cgcgctaatg tttctcgggc cactgccgat gagaaccgga acaaacttgt gtctgagctg       540
     gagaccttct tgggttaagt ctcggattgg ggtcgacaaa atcatgtcga tttcaatcct       600
     aaaaagacac aagtatgcgc cattaccact aaaaaagatc ctttcgtcgt caatctccgg       660
     tttgagaaca ctcccctggt tgccacagcc agtatcggta ttctcggcgt tgacatatcg       720
     agtgacgtta aaaaagaccc cttcgtcgtc aatctccggt tcgagaacac tcccctggtt       780
     gcctcagcca gtatcggtat tctcggcgtt gacatatcga gtgacgttca gtttcgcggt       840
     catctggaag acaaggccaa gctggcttcc aaaaagctgg gtgtgctcag tagggcgaag       900
     cagtatttcc agccgggcca ccgcctacta ctttacaagg cgcaagttcg gccccacatg       960
     gagtactgct cgcacctctg ggcgggagca ccccaatacc agcttcttcc atttgaccgc      1020
     atacaacgga gagcgactcg aatcgtcaac gaccgagctc ttaccgatcg gctagatcct      1080
     ctggccttgc ggagggacgt cagttccctc tgcatctttt accgcattta ccacggggag      1140
     tgttccgagg agttgtttgg aacgattcct gccgccgagt ttcgtcatcg gacgacacga      1200
     cagaccgcca ggtaccatcc tcaccatctc gatggctggc attccacaac cgtgcggttt      1260
     tcgcggaact ttctgccccg cacagccgcg ttgtggaacg gtctgtcctc ggcggtattt      1320
     ccaaaccaat acgacttagg gtccttcaag aagcgagcct atcatttcct caaaggccgg      1380
     caacgcatct gtagttcctc tggtgttgcg gatgtccatg ggcgtcgttg accaccttgg      1440
     tgtacacgcc gctcgtttgc ccccttttta ctataaaaaa aaaaaaaaaa aaa             1493
//
ID   ZENON-1_PXu repbase;    DNA;    INV; 782 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-1_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-782
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3099-3099 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
SQ   Sequence 782 BP; 191 A; 223 C; 181 G; 187 T; 0 other;
     aagtaataaa aaataaacag agattgtata caattttctt acaagtaatt taaatttcaa        60
     cacaggtact ttacctcctt gcctcagcca gtatcagtat tctcggcgtc gacatatcga       120
     atgacgttca gtttcgcggt catttggaag acaaggccaa gctggcctcc aaaaaactgg       180
     aagtgctcag cagagcgaag cagtatttcc aaccgggcca ccgcctccag ctgtaaaagg       240
     cgcaagttcg gccccacatg gaatactgct cgcatctctg ggcgggagca ccccagtacc       300
     agcttcttcc atttgaccgc atacaacgga gagcgattcg aatcgtcaac gaccgagctc       360
     ttactgatcg gctcgacact ctggcactgc ggagggacgt tagttccctc tgcattttct       420
     accgcatata ccacggggag tgctctgaag aattgtttgg aacgattcct gccgccgagt       480
     tccgtcatcg gacgacacga cagaccgcca ggttccatcc acaccatctc gatggctggc       540
     aatccacaac cgtgcggttt gcgcgaaact tcctgcctcg cacagcagcg ttgtggaatg       600
     gtctgtcctc ggcggtattt ccaaaccgct acgacttagg gtccttcaag aagcgagctt       660
     atcaccacct caaaggccgg caacgcatct gcggttcctc tggtattgct gatgtccatg       720
     ggcgtcgttg aacacctcgg tgttcccgct gctcgtttgc ccccttctgt tataaaaaaa       780
     aa                                                                      782
//
ID   ZENON-2B_PPo repbase;    DNA;    INV; 312 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2B_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-312
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3194-3194 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..227
FT                 /product="ZENON-2B_PPo_1p"
FT                 /translation="LHDIIPPSPFYHRTFRHTAGTHPFAVDIPRVRTKKFE
FT                 SSFLVRTAKVWNKLPASVFPSRYDVGAFKKRVNAYLLG"
XX
SQ   Sequence 312 BP; 85 A; 74 C; 70 G; 83 T; 0 other;
     aactccacga tataattccg ccatccccat tctaccatcg gacattcaga catacggccg        60
     gaacccatcc ttttgcagtt gatattccgc gagttcgaac aaagaagttt gagtcatcgt       120
     tcctcgtgcg tactgcgaag gtttggaata agttgccagc gtcggttttt ccgtccagat       180
     atgacgtggg ggccttcaag aaaagagtga atgcgtattt attagggtag cgcgtaccat       240
     ctttcgacca aatcttcact ctcagtcggt gggatcgtgg tcaagcgcta gcttaaaaac       300
     ttaaaaaaaa aa                                                           312
//
ID   ZENON-2C_PPo repbase;    DNA;    INV; 443 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2C_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-443
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3195-3195 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~94% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..355
FT                 /product="ZENON-2C_PPo_1p"
FT                 /translation="SVERRATKLFGDEDYNLASLEHRRRVASLXVFYRLHF
FT                 GECAQELYELIPPSPFYHRTSRRTAGLHPFIVEVPRVRTKRFETSFLVRTA
FT                 KEWNKLPASVFPSSYNVGAFKSRVNRYLLN"
XX
SQ   Sequence 443 BP; 112 A; 102 C; 114 G; 114 T; 1 other;
     ttcggtggaa aggcgggcca caaagctatt tggtgacgaa gactataact tagcaagtct        60
     tgaacacaga cgcagagtgg ctagcctgwc agtgttttac aggttgcatt ttggtgaatg       120
     tgcgcaggaa ttgtacgaac tcattccccc atcccctttt taccatcgga catctagacg       180
     tacggctggt ctccacccct tcatagttga agtgccgcgg gttcgaacga agcgattcga       240
     gacatcgttt ctcgtgcgca cagcaaagga gtggaataag ttgccggcgt cagtgttccc       300
     gtcaagttat aacgtgggtg ccttcaagag cagggtgaat cggtacttac taaactagcg       360
     cgtaccatcc ttcgaccaca tcttcacctt ggtctaggtg ggatagtggt caagcgctgg       420
     tttttgcaat ttaaaaaaaa aaa                                               443
//
ID   ZENON-2D_PPo repbase;    DNA;    INV; 117 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2D_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-117
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3196-3196 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~96% identical to consensus. 5'-truncated.
XX
SQ   Sequence 117 BP; 27 A; 24 C; 31 G; 35 T; 0 other;
     ttcaagagca gggtgaatcg gcacttattg agctagcgcg ctctatcctt cggccgcgtc        60
     ttcacttagc ttaggtggag tcgtggtcaa gcgctggttt atttatgtta aaaaaaa          117
//
ID   ZENON-2E_PPo repbase;    DNA;    INV; 141 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2E_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-141
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3197-3197 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~85% identical to consensus. 5'-truncated. ~87% identical to
CC   ZENON-2_PXu.
XX
SQ   Sequence 141 BP; 42 A; 28 C; 32 G; 39 T; 0 other;
     gtttttccgt caatatgacg tcggggcttc aagagtagag tgaataggta tttattaagc        60
     tagcgcgtac catctttcga ccacatcatc acttaacatc aggtgggatc gtggtcaagc       120
     gctggcttaa acataaaaaa a                                                 141
//
ID   Zenon-2_Hmel repbase;    DNA;    INV; 3585 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a CR1/Zenon element from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Zenon-2_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3585
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           542..3514
FT                 /product="Zenon-2_Hmel_1p"
FT                 /translation="RLVLLLTSLTNNTLNIMKNSKLKKVSQRLHSLSLKVQ
FT                 LGNIRGLHSNLIPVHYHLETEKPHLLFLTETQIGCPSDIAYLTYPGYTLEH
FT                 NFKPHAGVCVYVRDDICFQRLCKFEDPSFSVLWALVDLGIDKILYACVYRS
FT                 HSGDQETTRLTEYLSEAADSAQQKYPTAQLVLLGDFNGHHGEWLFPYRDTD
FT                 HAGRETRKLALTLNLTQLVQGATRVPDVESHTAYCLDLLLSTEPDRYSVSI
FT                 SPPLGGSDHCLVKSVSIYSPPDPSQLGNRRVWRYKSADWDEMRSFFASYPW
FT                 QSACFSSNDPSVCAEAVTDVLRMGMEYYIPFSDVPLSSKARPWFGPECKHA
FT                 EALHQQAYRTWADARNRKLEDVRIKKKAYNSAAKSCKKVMQKARLKHIRHI
FT                 GTKLASYPAGSKAFWSLSKSVEANFARPSLPPLLKPDGSLAHTSEEKANLF
FT                 ASQFAESSRLDAGGAVPPIPPKCDTLMSNIHIHQKEVRQVLRCLDVNKASG
FT                 PDGISAIVLRNCAAELTPVLTRLFRLSLTIGQVPKLWKLANVQPVPKKGSR
FT                 ADPANYRPISVTSIICKVMERVLNNKLLAYLETNDLLSDRQYGFRRNRSTG
FT                 DFLXYVTHFWSEAIERYGEAMAVSLDISKAFDRVWHDSLIGKLPAYGLPDD
FT                 LCSWLSDFLRDRSIRVVVDGYSSDIMDVNAGVPQGSVLSATLFLLHINDLL
FT                 IPGILGYADDSTVVERYMAKATASGPEIQSHRDTMVERLNLNLKAVSDWGD
FT                 ANLVRFNATKTQACLFTAKKRPFELSPSFRDVSVPLSDHLELLGITLSSTL
FT                 NFGSYIESRAQLAAKKLGVLSKVRQYFTPQHLLTLYKAQVRPCMEYCSHLW
FT                 DGSAKYQLQTLESVERRARRLINDGTLVETQLQSLSHRRRVASLSVFYRIH
FT                 FGECAHDLHSLVPPAPFYLRTSRNTASRHPYTVEIPTVRTKRFEATFFIRT
FT                 ARDWNSLPASVFPVTYNVGVFKDRVNRYLLGKRAPP"
XX
SQ   Sequence 3585 BP; 912 A; 877 C; 852 G; 941 T; 3 other;
     tgggggttga gttacctgcg tccgtaggag tacactcgaa gaatcgaatc cctacacgtg        60
     acccccgggt agtgcgaatc gggtaacatt ctggtgggag gcattagccg aggctggtta       120
     ccacccacct gacaaagtcg tgtcgtgaaa tggcctagtc gtgtttcggc atgatgtcag       180
     gtgaaaccgg atgggaaagt cgggtcagaa tagttgtgtt gtatgtagac cgtataagtt       240
     tcacacacag atcgtcacag gctggagact gatcatggag ggtagcggga tccgaggcac       300
     ggttcaccgc tggccgaccg caggtagtag ggggcccaag tagcgagcta gccactcgta       360
     aaaggctgcc ccgccaacta gcgaaaaatc ccggagatgc gccatcgtgc cggtcggcga       420
     ccggatgaga gggcccgatg gacttttttg ggggggctcg ggcgtccccg cagtctccag       480
     gtcagtctac tattggtgtg tacgtttctt gtgtgtgttt ctcgggttaa acattgtata       540
     acgcctcgtt ctactgctga cttcccttac caataacact cttaacatta tgaaaaacag       600
     taaattgaaa aaagtttcac agcggttgca ctccctctct cttaaagtgc aactcggcaa       660
     tattcgaggg ttgcactcga atctcatacc agtccactac catctcgaga cagagaaacc       720
     tcatttgctg ttccttacgg agacgcagat tggttgtccg tccgacatcg cctacttaac       780
     ttaccctggg tataccctgg agcacaattt caagccccat gcgggagttt gcgtatacgt       840
     tcgtgacgac atctgctttc agcgtctctg taagtttgaa gacccctctt tttcagttct       900
     ttgggcactc gtagacttgg gcattgataa aatactctat gcctgtgtat accgttcaca       960
     tagtggggat caggagacga ctaggcttac cgaatacttg agtgaagctg ctgattcggc      1020
     tcaacaaaag tacccaacag cccaattagt attactgggg gattttaatg gccaccatgg      1080
     tgaatggcta ttcccatacc gggatacaga ccatgctggg agagaaacac gtaagcttgc      1140
     cttaacgtta aatcttactc agctggtcca aggtgcaaca cgtgtacctg atgttgagtc      1200
     gcataccgcc tattgcttgg atctcttgct gtcaaccgaa ccagaccgct actcagtgtc      1260
     tatttcacca ccactgggtg gatctgacca ctgtttggtg aaatctgtgt cgatatactc      1320
     tccgcccgac cccagtcaat taggaaatcg gcgagtatgg cgatacaagt cagcggactg      1380
     ggatgaaatg cggtcctttt ttgcttccta tccttggcaa tctgcatgct tctcctctaa      1440
     tgatccctca gtttgtgcgg aggctgtaac agatgtgctg cgcatgggta tggaatatta      1500
     tattccattc tctgacgtgc ctctgtcaag caaagcccgc ccttggttcg ggcctgaatg      1560
     taaacacgca gaagctctac atcaacaggc ttatcgaacc tgggcagatg ctcgtaaccg      1620
     caaactagag gatgttcgca taaagaagaa agcctacaat tcagcggcca agtcttgcaa      1680
     aaaggtaatg cagaaggctc gccttaagca cataaggcat atagggacca aactcgcgtc      1740
     gtacccagca ggtagtaaag cgttttggtc cttatcgaaa tcagttgaag caaacttcgc      1800
     tcgcccttca cttcctccac tgctgaaacc cgatgggtca ctagctcata cttccgaaga      1860
     gaaagcaaac ttgtttgcat ctcaatttgc agaatcttcg cgtctagacg caggtggcgc      1920
     agtacctcca ataccaccaa aatgtgacac tctaatgagt aatatacaca ttcaccaaaa      1980
     ggaggtgcgc caagttctac gatgtcttga cgtgaacaaa gctagtggtc ctgatggtat      2040
     atcggccatt gtgttgagaa attgtgcggc tgagttgact cctgttttaa cacgcctttt      2100
     tcgactttct cttacgattg gacaagtgcc taaactctgg aagcttgcca acgtgcaacc      2160
     agtgcccaaa aagggcagtc gcgccgaccc tgccaattac aggccaatct cagtcacgtc      2220
     cataatctgt aaggtcatgg aacgtgttct gaataataaa ctcttggcat acctagaaac      2280
     aaacgacctt ctcagtgayc gccaatatgg ctttcggcgt aatcggtcta ctggggattt      2340
     tctarcgtat gtcactcatt tctggagtga ggccattgag aggtatggtg aggcaatggc      2400
     cgtttctctt gacatctcaa aggccttcga cagggtttgg catgatagcc ttataggaaa      2460
     gttaccagca tatggcttgc ccgatgactt gtgttcttgg ctatcggact tcttgaggga      2520
     ccgatcaata cgtgtagtcg tggatggcta ctcgtctgat ataatggatg taaatgccgg      2580
     tgttcctcaa gggtcagtgc tctctgcaac tctattcctg ctccatataa atgatttact      2640
     cattcctgga attcttgggt acgcagatga cagcactgtt gtagagcgct atatggctaa      2700
     agcaactgca agtgggcctg aaatacaatc gcatagggat actatggttg agcgccttaa      2760
     tttgaacctc aaagcagtct ccgattgggg agatgctaat ttggtcagat ttaatgccac      2820
     taagacccag gcgtgtctgt tcaccgcgaa aaaaaggcca ttcgaattat ccccctcgtt      2880
     tcgagatgta tcggtmccgt taagcgacca ccttgaactt cttggcatta ctctttcatc      2940
     gactcttaac tttggatctt acattgagtc cagagctcag ttggctgcta agaaacttgg      3000
     cgtcctctcc aaggtgagac agtactttac acctcaacat cttctcacac tgtataaagc      3060
     acaagttaga ccatgtatgg agtactgctc tcatttatgg gatggttctg ccaagtacca      3120
     attacagacc ttagagtcag ttgagagacg agccagaagg ctaatcaatg acgggaccct      3180
     tgttgaaact caactgcaga gccttagcca ccggcgtagg gttgcatctc tgtctgtgtt      3240
     ttaccggata cacttcggag agtgtgccca tgatttacat agcttggttc ccccagcccc      3300
     tttttacctc agaacttcca gaaatacagc ttcacgccat ccatacacgg tagaaattcc      3360
     taccgtacga acgaaacgct ttgaggctac attctttatc cgcactgcga gagattggaa      3420
     ctcattgccg gcatctgtat ttcctgtgac atacaatgtg ggggtcttca aagatagagt      3480
     gaataggtat cttctaggca agcgtgcacc accgtagatc gcatcaacgc tcaccagact      3540
     tgatgcggtc aaacgcaagc ctattccata taaaaaaaaa aaaaa                      3585
//
ID   ZENON-2_PPo repbase;    DNA;    INV; 311 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-311
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3198-3198 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~97% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..224
FT                 /product="ZENON-2_PPo_1p"
FT                 /translation="HDLIPPSPFYHRTFRHTAEFHPFVVDIPRVRTKKFQS
FT                 SFLVRTAKDWNMLPASVFPSKYDVGAFKRRVNSYLLS"
XX
SQ   Sequence 311 BP; 84 A; 80 C; 65 G; 82 T; 0 other;
     tgcacgattt aattccaccg tcccctttct accaccggac gttcaggcat acggccgaat        60
     tccatccttt cgtagttgat attccgcgag ttcgaacgaa aaagtttcaa tcatcgttcc       120
     ttgtgcgcac tgcaaaggat tggaacatgt tgccggcatc agttttcccg tccaaatatg       180
     acgtgggggc cttcaaaagg agagtgaaca gctacctatt aagctagctc gtaccatctt       240
     tcgactgcat cgtcacctcc ttcaggtggg atcgtggtca agcgctagct taacaaataa       300
     taaaaaaaaa a                                                            311
//
ID   ZENON-2_PXu repbase;    DNA;    INV; 389 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-2_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-389
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3100-3100 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
SQ   Sequence 389 BP; 109 A; 90 C; 85 G; 104 T; 1 other;
     aaatagctcg gcaacttatc tttacaaagt atattgttca ttgttctaca ggcttcattt        60
     tggagagtgt gcgcaggaat tacacgagtt aattccccca tcaccatttt accaccggac       120
     gttcaggcat acggcgggaa tccatccttt tgtggtagag gtaccgcgcg ttcgaacgaa       180
     gcgattcgaa gcatcgttcc ttgtgcgtac cgcaaaggat tggaacaagt tgccagcctc       240
     tgtttttccg tccaaatatg atattgggac cttcaaaagt agagtgaata ggcacttact       300
     aagctagcgc gtaccatctt tcgaccaaat ctccactawc accaggtggg atcgtggtca       360
     agcgctagct tataaaacgt aaaaaaaaa                                         389
//
ID   Zenon-3_Hmel repbase;    DNA;    INV; 3622 BP.
XX
AC   .
XX
DT   10-DEC-2013 (Rel. 19.02, Created)
DT   10-DEC-2013 (Rel. 19.02, Last updated, Version 1)
XX
DE   a CR1/Zenon element from Heliconius melpomene.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; Zenon-3_Hmel.
XX
OS   Heliconius melpomene
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Heliconiini;
OC   Heliconius.
XX
RN   [1]
RP   1-3622
RA   Lavoie C.A., Platt R.N., Novick P.A., Counterman B.A.
RA   and Ray D.A.;
RT   "Transposable element evolution in Heliconius suggests genome
RT   diversity within Lepidoptera.";
RL   Mob DNA 4(1), 1-10 (2013).
XX
DR   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           612..2567
FT                 /product="Zenon-3_Hmel_1p"
FT                 /translation="YYXKHRNRNKVKQRLHVLPLKVHLTNIRGLHSNINAV
FT                 HHHLETERPHLLFLTETQIKCPADASYLNYPGYSLEHRFELRAGVCVYVRD
FT                 DICIKRLKNLEVPGLSVLWVLVDTGATQNVYAGVYRSHSGDXETTRLFGHL
FT                 SEAADETQQRYPAAQLFVLGDFNAHHKEWLFPYQTTDHAGRXARKFSLXXN
FT                 LSQLVNCATRVPDVESHTANCLDLLLTTDPDRCSVAVTAPLGSSDHCLVKS
FT                 VSVYSPPDQGPCGIRRVWRYKSADWDEMRHFFSAYPWRSCFSSGESSSCAE
FT                 AITEVLRQGMEYFIPYSDIPSGSKARPWFDADCDRAEARKQEAYTAWADAR
FT                 TRKAPNTRELKKNFNRASXLGKKXLRRARFXXXRKXGAKLASYPAGSKAFW
FT                 SLAKAVEXNFCRXSLPPLQRPDGSLAHTAXXKANLFASXFAXNSRLDDAGK
FT                 XPPSLPXADCSMAAVRIRQKEVRVALQNLDVNKASGPDGIPAIVLRNCAPE
FT                 LSPVLTRLFRLSLETGVVPKSWKLANVQPVPKKGSRXDPXNYRPISVTSIL
FT                 CKTMERVLNKRLVAYLEXNDLLSDXQYGFRKGRSTGDLLVYATHIWGEAIE
FT                 RYGEALAVSLDISKAFDRVWHASLISKLPAYGXPPDLCKWISDFLSERSIQ
FT                 VVP"
XX
SQ   Sequence 3622 BP; 853 A; 958 C; 888 G; 847 T; 76 other;
     gggggttaat gttgtccgcg tccgtaggcg aagtccadta tgggcttcat gactctagat        60
     accctacacg tgacccctgg gcagtgccaa atggacaaca ctctttccgg tggtaggctt       120
     cggccgcggc tggttaccac cctacaagct aaatcgtgcc gccaagcggt atccccgcgt       180
     tccggtacgc agctagtagt agcctacttg gaggttgggt ctgtgcagtt gcatcttgac       240
     agtaagcggt ttggagcagc tgattgttgc ggcaccggga gtctggctct ggaggctagc       300
     gggatccgaa gcacggtgca ccgctggccg accgtaggca gttgggggcc caagtagcgg       360
     gaaagccacc cgtcaaaggc tgccccgcca cctgacgaaa aatcccgggt tgttccacct       420
     tgccggttgg cgaccggatg ggaggaccag gtgagcatcc ccgggggggt tcgggcgtcc       480
     ccgcggtctc caagccagcc tcttctgtgt gtggtcgcag tcagcthgct cctttggcta       540
     aacgagtcaa gatgcctcgc acaactgcct tcctcctgcc tattcacttc ttccctctth       600
     tchaataata atattatrag aagcacagaa acagaaacaa ggttaaacag cggttgcacg       660
     tcctcccatt gaaagtgcac ctcaccaata ttcgaggctt gcactctaat atcaacgccg       720
     tccaccacca cctagagacc gaaagaccgc atcttctgtt cctaactgag acgcagatca       780
     aatgtccagc tgacgcttcg tacctcaact accctggcta ctccttggaa cacaggttcg       840
     aactacgagc aggggtctgc gtgtacgttc gcgatgacat ctgcatcaag cgtctcaaaa       900
     accttgaggt accaggttta tctgtacttt gggtactggt cgatactgga gctacacaaa       960
     atgtgtatgc tggtgtctac cgctcgcaca gtggggatbc ggagacaacc aggctctttg      1020
     gtcatctcag cgaagctgct gatgagactc agcagaggta tccagccgca cagttattcg      1080
     ttctggggga cttcaatgct caccacaaag agtggctgtt cccataccag acgactgacc      1140
     acgctggacg hgavgcgcgc aaattttcac tatygcwaaa tctytcccag ctggtcaatt      1200
     gtgcgacgag ggtccccgat gtdgagtccc acacagctaa ttgcttagac cttctgctga      1260
     ctacvgaccc agaccgatgc tctgtggcag ttacggcccc gttgggctcc tctgaccact      1320
     gtctggtgaa gtctgtatcc gtgtactcac cacccgatca gggcccttgc ggtataagac      1380
     gggtgtggcg atacaagtca gcagactggg atgagatgcg ccacttcttt tcggcttatc      1440
     cttggagatc ttgtttttct tcaggagaat cgtcgagctg cgcagaagcc ataaccgaag      1500
     tcttacggca gggcatggag tatttcatac catactctga tattccttct ggtagtaaag      1560
     ctcgcccatg gtttgacgct gactgtgacc gtgcagaagc gcggaaacaa gaggcgtata      1620
     ctgcctgggc tgatgctcgc acgcgcaaag ctccgaatac tcgwgaactg aagaaaaact      1680
     tcaacagggc ctccargcta ggyaaaaarr aattacgyag agctcgtttc gascrcrttc      1740
     gtaaartagg cgctaagctt gcctcgtacc cagcgggtag taaggcattt tggtcrctyg      1800
     cgaargcrgt cgaarckaac ttctgtcgry cctctttgcc gcccttgcag aggccagatg      1860
     gttcgcttgc tcacactgcg gwagakaarg csaacttgtt cgcttctmtk tttgcggawa      1920
     aytcgcgtct agatgaygcw ggtaaawcac caccatcwtt rccsyrcgcc gactgctcta      1980
     tggcagctgt ccgcattcgc caaaaagagg tacgcgtagc cctgcaaaat ctagacgtga      2040
     ataargcgag cggcccagac ggcattcctg caattgtgct gcgwaactgt gcrcctgary      2100
     tgtctccggt tctgacacgc ctgtttcgac tytcactaga gactggagta gtgcccaart      2160
     cgtggaagct tgcaaaygtr caacctgtgc ccaaaaaagg cagtcgggba gaccctrcca      2220
     actacaggcc gatatcrgtc acctctatac tctgcaagac tatggagcgt gtactgaata      2280
     aaaggcttgt ggcatatctg gaggawaatg atctcctaag cgatarccag tacggatttc      2340
     gtaaagggcg atcgacggga gatctccttg tgtatgccac tcacatatgg ggcgaggcta      2400
     tcgagagata tggcgaggcc cttgccgtgt ctctcgatat ctctaaagca tttgacaggg      2460
     tctggcatgc aagcctyata agtaagcttc ccgcatacgg avtaccgcct gacctttgca      2520
     aatggatatc agacttcttg agtgagcgat cgatacaagt tgtcccttga tggccgcgta      2580
     tctgatcaac aggctataaa tgccggagtt cctcaaggat ctgttctgtc cgcaacccta      2640
     ttcctgctgc acatcaacga tatgttaaca cccggtatcg ttgggtacgc tgatgacagc      2700
     acggttgttg acaaatatct atccaatgcg aaggccaacc ggaacgaaat ccagtcttgt      2760
     cgagagtcta tgatcggtcg tctgaacctg gcacttcaav gcgtctccga atggggcgat      2820
     gccaatctag tcatgtttaa cgctaccaaa actcaggcgt gtttattttc cgcaaaacgg      2880
     ggccccttcg atcttgctcc gactttccga gatgtacccg tgccgatagc tgaccatctc      2940
     gagcttcttg gcatgaacct tacgtcagat ttgaactttg gacgttacat cgagtctttg      3000
     gccacaactg cagctaaaaa actaggtgtc ctatcaaagg ttaggcagta tttcactccg      3060
     ggacagcttc ttcaactcta taaagctcaa gtccgatcga gtatggagta ctgctgccac      3120
     ctttgggacg gatctgctaa atatcagctg gcgacchtag actcsattga aaatcgcgcc      3180
     aagaadctca ttggcaattc agcgattgtt gaggcaaagc tdcaaagcct tgagcatcgb      3240
     cgaaaagtag cttgcctgac gathttctac aggatacatt tcggagagtg tgcagcagcg      3300
     ctgcatgact taataccctc ttctcctttc yatctgcggg acabtagacg taggcaggga      3360
     tttcacccat ahgtcgtcga tataccacct tttcgtacgc agcgcttcgc ctccactttc      3420
     ctaatgcgaa cggctaagga gtggaactcc ctgcctgctg aactgttccc cgmcaagtat      3480
     aacctggccc tctttaaaga acgagtgaat aggcactacc taggcaagca tgctccacct      3540
     tcgtycgcat cgtcacttac caccaggtga gatagcggac aaatgcttgc ctatctacaa      3600
     taaaaaaaaa aaaaaaanaa aa                                               3622
//
ID   ZENON-3_PPo repbase;    DNA;    INV; 628 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-3_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-628
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3199-3199 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..575
FT                 /product="ZENON-3_PPo_1p"
FT                 /translation="LASKKLGVLGRAKQYFTPAHRLQLYKAQVRPHMEYCS
FT                 HLWAGAPKYQLLPFDRVQRRATRIVNDRGLTDRLDSLALRRDVSSLCIFYR
FT                 LYHGECSEELFGTIPAAEFRHRTSRQSAKYHRYHLDGWHSTTTRFSRTFLP
FT                 RTVALWNTLSSAVFPNSYDLGAFKKRAYSSLKGRQRICSTLGIADVHGRRI
FT                 T"
XX
SQ   Sequence 628 BP; 144 A; 174 C; 149 G; 161 T; 0 other;
     agttggcctc caagaagctt ggtgtgctcg ggagagcgaa gcagtatttc acgccagccc        60
     atcgtctgca gttatacaaa gcacaggttc ggccacatat ggaatactgc tcgcatctct       120
     gggccggagc ccctaaatac cagcttcttc cttttgaccg cgtgcagcga cgtgccactc       180
     gaatcgtcaa cgaccggggt ctcaccgatc ggctcgactc attggctctg cgaagggacg       240
     ttagttccct ttgcattttc tatcgcctct accacgggga gtgttccgaa gaattgtttg       300
     gaactatacc tgccgctgag ttccgtcatc gcacgagtcg acagagtgcc aaatatcatc       360
     gataccacct cgatggttgg cattccacaa cgacgaggtt ttcacgtaca ttcttacctc       420
     gtacagtcgc gttgtggaac actctgtcct cagcggtatt tccaaacagt tacgacttag       480
     gggccttcaa gaaaagagct tactcctccc ttaaaggccg gcagcgcatc tgcagtaccc       540
     ttggcattgc ggatgttcat gggcgtcgga taacttaata tcaagcgatc cgttgctcgt       600
     ttgcccgctt ttcttataaa aaaaaaaa                                          628
//
ID   ZENON-3_PXu repbase;    DNA;    INV; 392 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-3_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-392
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3101-3101 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 392 BP; 97 A; 92 C; 97 G; 106 T; 0 other;
     attttaacag tggtagagcc cgctttaaca tcttcgcacg aattggcccg gctcgcccgg        60
     tgaaatacca cgaccacaca gaagacaggc gtgaagtgga agcaattccg cgtttcgtct       120
     gatgagtgtg cgtcccggag gcctaattta gtcctctttc ccttcccacc ctttttctta       180
     taaggaaagg atgggaagtg gaagtggact ttccggatga gaggatgcat gggaagggaa       240
     aatattttct ttctgtgcat cctctcctcc gtcgattaaa ggtaggcaac gcatatgcaa       300
     ttgcgtatgt ctatgggcaa cggtcacttc gctatttcag cgatttcagg tggccgctcg       360
     ctcgtttgcc accttatgat ataaaaaaaa aa                                     392
//
ID   ZENON-4_PPo repbase;    DNA;    INV; 387 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-4_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-387
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3200-3200 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~99% identical to consensus. 5'-truncated.
XX
SQ   Sequence 387 BP; 93 A; 84 C; 109 G; 101 T; 0 other;
     aataacagtg gtagtgcccg ctttaacatc ttagcacgaa tgggccggca cgcccggtgt        60
     aataccacga ccacacagaa gacaggcgtg aaatggaagc aattccgtgt ttcgtctgat       120
     gagtgtggtg ccggaggcct aatttaagtc cctttctctt taccaccctt ttcttataag       180
     gagaggatgg gaaggggaag tggatttgac ggtggaggag atgcatagga aggggaaata       240
     tcctctttat gtgcgtctcc tcctccgtcg tataagggta ggcaacgcat ctgcaattgc       300
     ggatgtctat gggcagcggt cgcttcgcca ttttggcgga ttcaggtggc cgcttgctcg       360
     tttgccacct tatgttataa aaaaaaa                                           387
//
ID   ZENON-4_PXu repbase;    DNA;    INV; 303 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-4_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-303
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3102-3102 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~95% identical to consensus. 5'-truncated.
XX
SQ   Sequence 303 BP; 76 A; 83 C; 66 G; 78 T; 0 other;
     atcgtacgag tcgacagagc gccaaattcc atcctttcca tctcgatggc tggcattcca        60
     caacgacgag attttcgcgt aactttttac ctcgcacagc cgcgttgtgg aataccctgt       120
     cctcagcggt atttccaaac agttacgact taggggcctt caagaaaaga gcgtacacct       180
     tccttaaagg ccggcaacgc atctgcggtt cctctggcgt tgcggatgtc catgggcgtc       240
     ggatcaaata atattaggcg attcgttgct cgtttgcccc cttctcctat aaaaaaaaaa       300
     aaa                                                                     303
//
ID   ZENON-5_PPo repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   08-SEP-2015 (Rel. 20.09, Created)
DT   08-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio polytes: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-5_PPo.
XX
OS   Papilio polytes
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-177
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the common Mormon genome.";
RL   Repbase Reports 15(9), 3201-3201 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~90% identical to consensus. 5'-truncated.
XX
SQ   Sequence 177 BP; 25 A; 61 C; 46 G; 45 T; 0 other;
     tcgtgcgttg gcgaccgggt gagaggaccc gatggcgatc tctggggggg ttcgggcgtc        60
     cccgcagtct ccgtgtcaac cacccatcgg catggcatat ctaactgcgt tattgggttg       120
     tcgtctcatc gcctcgctca acttccttcc cccatccatt cactccctct acatgcc          177
//
ID   ZENON-5_PXu repbase;    DNA;    INV; 287 BP.
XX
AC   .
XX
DT   07-SEP-2015 (Rel. 20.09, Created)
DT   07-SEP-2015 (Rel. 20.09, Last updated, Version -1)
XX
DE   Non-LTR retrotransposon from Papilio xuthus: consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; ZENON-5_PXu.
XX
OS   Papilio xuthus
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio.
XX
RN   [1]
RP   1-287
RA   Kojima K.K. and Jurka J.;
RT   "Non-LTR retrotransposons from the Asian swallowtail genome.";
RL   Repbase Reports 15(9), 3103-3103 (2015).
XX
DR   [1] (Consensus)
XX
CC   ~98% identical to consensus. 5'-truncated.
XX
SQ   Sequence 287 BP; 61 A; 87 C; 67 G; 72 T; 0 other;
     gacacgacag accgcaggtt ccatccacac cacctggatg gctggcgttc cacaacggtg        60
     cgattctcgc gcaatttctt gcctcgcaca gtcgcgttgt ggaacggtct gtcctcggcg       120
     gtatttccaa accaatacga cttagggacc ttcaagaagc gagcatacca tttccttaaa       180
     ggccggcaac gcatctacag ttcctctggt gttgcagatg tccatgggtg tcgttgatca       240
     cctcggtgtt cccgccgctc gtttgccccc ttctcttata aaaaaaa                     287
//
ID   ZENON_BM    repbase;    DNA;    INV; 3016 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   06-AUG-2007 (Rel. 12.09, Last updated, Version 3)
XX
DE   Bombyx mori non-LTR retrotransposon complete CDS, a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   putative reverse-transcriptase/endonuclease; ZENON_BM.
XX
NM   ZENON_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata;
OC   Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
XX
RN   [1]
RA   Liu X.;
RT   "A complete full-length non-LTR retrotransposon on the Z
RT   chromosome of the silkworm, Bombyx mori.";
RL   Unpublished.
XX
RN   [2]
RP   1-3016
RA   Gentles A. and Jurka J.;
RT   "Consensus of non-LTR retrotransposon ZENON_BM.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
DR   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2958
FT                 /product="ZENON_BM_1p"
FT                 /translation="MKVRKRKRVLSATPHSTFNVDFSNVRGLHSNLDAVHH
FT                 HLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADV
FT                 CCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEG
FT                 TNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGLSQL
FT                 VTQPTRVLDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAATPL
FT                 SRPSRRTTTRYRRVWQYLSADWDGLREFYASYPWGRFCFSSADPDVCADRL
FT                 KDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDDARRR
FT                 RDPNISEERRKYNAASRSYKKVIARAKSEHVARIGERLKSYPSGSRAFWSL
FT                 AKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATP
FT                 PNILRCDSSLPEICFTQCAVRRELRLLDVHKSSGRDGIPAVVLKTCAPELT
FT                 PALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSK
FT                 VMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESK
FT                 GEALAVSLDIAKAFDWVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVV
FT                 VDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDAR
FT                 YIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAF
FT                 TAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKM
FT                 LGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQR
FT                 RAVRIVDNPXLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRF
FT                 YHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYD
FT                 MSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR"
XX
SQ   Sequence 3016 BP; 639 A; 810 C; 829 G; 737 T; 1 other;
     atgaaagttc gaaaaaggaa aagggttttg tcggcgactc cccattccac atttaatgtg        60
     gatttcagca atgtaagggg tctacatagc aacctcgacg ccgtacacca ccatcttgag       120
     acggcgcagc ctgcccttct ttttctgacg gagacgcaga tatctgctcc ggatgatact       180
     tcgtaccttg aataccccgg ctacgtattg gagcacaact tcctgcgtaa agccggggtg       240
     tgtgtattcg tccgggctga tgtctgttgt cgccgtctac gaagcctcga acaacgggac       300
     ctgtccctct tgtggctgcg cgtagatcac gggggctgta cccgagtcta cgcgtgcctg       360
     tacaggtccc acagcagtga tgcaggttca gctctgatag agcatgtgca agaggggact       420
     aaccgcgtgc ttgagcagta cccatctgcg gaggtggtgg ttcttggaga ctttaacgct       480
     catcaccaag agtggttggg gtccagaacc actgacctcc cgggtcggac tgcctacgat       540
     ttcgccttgg cctacggcct ctcccagctg gtgacacagc ccacccgtgt cctagatatt       600
     gaggggcacg agccttctct gttggacctt ctgctgacca ccgatccagc cggatacagt       660
     gtggtggtcg acgctccact tggatcgtct gatcactgcc ttatccgtgc tgccacacca       720
     ctctctcgtc ctagtcgtcg aacgacgacc aggtatcgaa gagtttggca gtatttgtca       780
     gcagattggg atggattgcg tgagttttac gcatcctacc catgggggcg gttctgcttt       840
     tcctctgctg atcctgacgt ctgtgcggac cgtcttaaag acgtggtgct ccaggggatg       900
     gaattgttta ttccctcctc tgaagtgccc gttgggggtc gcagcagacc ctggtataac       960
     aatgccagca gggatgctgc acacctcaag cggtccgcat acgttgcatg ggatgatgct      1020
     aggagacgtc gggatcctaa catctcagag gaaaggcgga aatataacgc cgcttccagg      1080
     tcctacaaga aggttattgc cagggcgaaa tcggagcacg ttgctagaat tggcgagcga      1140
     ctgaagagct atccctctgg gagccgtgct ttttggtcgc tcgccaaagc tgcagaaggt      1200
     aacttttgca ggtctagtct cccaccacta cgcaagtccg atgacagtct ggcccatagt      1260
     gcgaaagaga aggctgacct tctggtcaaa ctcttcgcct cgaactcgac tgtggacgac      1320
     gggggtgcca caccaccgaa catcctccgg tgtgatagtt ccctgccgga gatctgcttt      1380
     acacagtgtg cagtcaggcg ggaactccga ctcctggacg tccataagtc gagcgggaga      1440
     gacggcatcc ctgcagtggt tctgaaaacg tgcgcccctg agctgacgcc tgcgctaacg      1500
     cgtttgtatc gcctctctta ttgcgctaac agggttccgt cttcatggaa gactgcccac      1560
     gtccacccta tccccaagaa gggtgaccgg tcggacccat cgagctacag gcctatcgcg      1620
     ataacttcct tgctttccaa ggtgatggag cgaataatta atatacaact cctgaagtat      1680
     ctggaggatc gccagctgat cagtgaccga cagtacggtt tccgtcacgg tcgctcagct      1740
     ggcgatcttc ttgtatacct tactcacagg tgggctgaag ccttggagag caagggcgag      1800
     gctcttgctg tgagccttga tattgcgaag gccttcgact gggtctggca tagggcactt      1860
     ctgtcgaagc taccatctta cggaatcccc gagggtctct gcaagtggat cgctagcttt      1920
     ttggatgggc ggagcatcac ggtcgttgta gacggtgact gttctgatac catgaccatt      1980
     aacgctggcg ttccacaagg ttcggtgctc tcccccacgc ttttcatcct gtatatcaat      2040
     gacatgctgt ctattgatgg catgcattgc tatgcggatg acagcacggg ggatgcgcga      2100
     tatatcggcc atcagagtct ctctcggagc gtggtgcaag agagacgatc aaaacttgtg      2160
     tctgaagtgg agaactctct ggggcgagtc tccaaatggg gtgaattgaa cttggttcaa      2220
     ttcaacccgt taaagacaca agtttgcgcg ttcactgcga agaaggaccc ctttgtcatg      2280
     gcgccgcaat tccaaggagt atccctgcaa ccttccgaga gtattgggat acttggggtc      2340
     gacatttcga gcgatgtcca gtttcggagt catttggaag gcaaagccaa gttggcgtcc      2400
     aaaatgctgg gagtcctcaa cagagcgaag cggtacttca cgcctggaca aaggcttttg      2460
     ctttataaag cacaagtccg gcctcgcgtg gagtactgct cccatctctg ggccggggct      2520
     cccaaatacc agcttcttcc atttgactcc atacagagga gggccgttcg gattgtcgat      2580
     aatcccaktc tcacggatcg tttggaacct ctgggtctgc ggagggactt cggttccctc      2640
     tgtattttgt accgtatgtt ccatggggag tgctctgagg aattgttcga gatgataccg      2700
     gcatctcgtt tttaccatcg caccgcccgc caccggagta gagttcatcc gtactacctg      2760
     gagccactgc ggtcatccac agtgcgtttc cagaggtctt ttttgccacg taccatccgg      2820
     ctatggaatg agctcccctc cacggtgttt cccgagcgct atgacatgtc cttcttcaaa      2880
     cgaggcttgt ggagagtatt aagcggtagg cagcggcttg gctctgcccc tggcattgct      2940
     gaagtccatg ggcgacggta accactcacc atcaggtggg ccgtatgctc gtctgcctac      3000
     aaaggcaata aaaaaa                                                      3016
//